BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780552|ref|YP_003064965.1| Holliday junction DNA helicase
RuvB [Candidatus Liberibacter asiaticus str. psy62]
         (334 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254780552|ref|YP_003064965.1| Holliday junction DNA helicase RuvB [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040229|gb|ACT57025.1| Holliday junction DNA helicase RuvB [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 334

 Score =  670 bits (1728), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/334 (100%), Positives = 334/334 (100%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV
Sbjct: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII
Sbjct: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL
Sbjct: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT
Sbjct: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI
Sbjct: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR
Sbjct: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334


>gi|315122879|ref|YP_004063368.1| Holliday junction DNA helicase RuvB [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313496281|gb|ADR52880.1| Holliday junction DNA helicase RuvB [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 344

 Score =  616 bits (1589), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 302/334 (90%), Positives = 321/334 (96%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M DREGLLS +VS+ED D+ LLRPRTL+EFTGQ EACSNLKVFIEAAKAR+EALDHVLFV
Sbjct: 1   MTDREGLLSHSVSKEDGDVLLLRPRTLDEFTGQTEACSNLKVFIEAAKARSEALDHVLFV 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII
Sbjct: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL+NPLQDRFGIPIRL
Sbjct: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLSNPLQDRFGIPIRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           NFYE+EDLKTIV RGAKL GL +TDEAA EIAMRSRGTPRIAGRLLRRVRDFAEVAHA+ 
Sbjct: 181 NFYEVEDLKTIVHRGAKLIGLPITDEAAYEIAMRSRGTPRIAGRLLRRVRDFAEVAHAEI 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           ITR+IAD AL+RL++DKMGFDQLD+RYLTMIAR+FGGGPVGIETISAGLSEPRDAIEDLI
Sbjct: 241 ITRDIADEALVRLSVDKMGFDQLDVRYLTMIARHFGGGPVGIETISAGLSEPRDAIEDLI 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           EPYMIQ+GFIQRTPRGRLLMP AW+HLGI IP++
Sbjct: 301 EPYMIQKGFIQRTPRGRLLMPSAWKHLGISIPYK 334


>gi|222149654|ref|YP_002550611.1| Holliday junction DNA helicase RuvB [Agrobacterium vitis S4]
 gi|254767403|sp|B9JRX1|RUVB_AGRVS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|221736636|gb|ACM37599.1| Holliday junction DNA helicase RuvB [Agrobacterium vitis S4]
          Length = 347

 Score =  513 bits (1320), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 253/319 (79%), Positives = 287/319 (89%), Gaps = 1/319 (0%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           ED D S LRP+TL++FTGQ EA +NLK+FIEAAK R EALDHVLFVGPPGLGKTTLAQ++
Sbjct: 15  EDVD-SALRPQTLDDFTGQAEARANLKIFIEAAKNRGEALDHVLFVGPPGLGKTTLAQIM 73

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A+ELGVNFRSTSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRLS  VEEILYPAMEDFQL
Sbjct: 74  AKELGVNFRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSPAVEEILYPAMEDFQL 133

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           DL++GEGP+ARSVKI+LS+FTL+AATTR+GLLT PL+DRFGIP+RL+FY +E+L+ IV+R
Sbjct: 134 DLIIGEGPAARSVKIDLSKFTLVAATTRLGLLTTPLRDRFGIPVRLSFYTVEELELIVRR 193

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
           GA+L GL +TD+ A EIA R+RGTPRIAGRLLRRVRDFAEVA A  +TREIAD AL RL 
Sbjct: 194 GARLMGLGMTDDGAREIARRARGTPRIAGRLLRRVRDFAEVARAPAVTREIADEALTRLL 253

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D MG DQLD RYLTMIA NFGGGPVGIETI+AGLSEPRDAIED+IEPYMIQQGFIQRTP
Sbjct: 254 VDNMGLDQLDTRYLTMIAVNFGGGPVGIETIAAGLSEPRDAIEDIIEPYMIQQGFIQRTP 313

Query: 315 RGRLLMPIAWQHLGIDIPH 333
           RGR+L  IAW+HLG+  P 
Sbjct: 314 RGRVLTAIAWKHLGLMPPK 332


>gi|222086987|ref|YP_002545521.1| Holliday junction DNA helicase RuvB [Agrobacterium radiobacter K84]
 gi|221724435|gb|ACM27591.1| Holliday junction DNA helicase RuvB [Agrobacterium radiobacter K84]
          Length = 341

 Score =  512 bits (1319), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 251/327 (76%), Positives = 292/327 (89%), Gaps = 1/327 (0%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           ++S     ED D++L RP++L+EFTGQ EA +NLKVFIEAAK R EALDHVLFVGPPGLG
Sbjct: 1   MISPEKRGEDLDVTL-RPQSLDEFTGQAEARANLKVFIEAAKGRGEALDHVLFVGPPGLG 59

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTTLAQ++A+ELGVNFRSTSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRL+  VEEILY
Sbjct: 60  KTTLAQIMAKELGVNFRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLNPAVEEILY 119

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           PAMEDFQLDL++GEGP+ARSVKI+L++FTL+AATTR+GLLT PL+DRFGIP+RL+FY +E
Sbjct: 120 PAMEDFQLDLIIGEGPAARSVKIDLAKFTLVAATTRLGLLTTPLRDRFGIPVRLSFYTVE 179

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +L+ IV+RGA+L GL +T+E A EIA R+RGTPRIAGRLLRRVRDFAEVA A+ +TREIA
Sbjct: 180 ELELIVRRGARLMGLGITEEGAREIARRARGTPRIAGRLLRRVRDFAEVAKAEAVTREIA 239

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           D AL RL +D +GFDQLD RYL MIA NFGGGPVGIETI+AGLSEPRDAIED+IEPYMIQ
Sbjct: 240 DEALTRLLVDNVGFDQLDKRYLNMIAVNFGGGPVGIETIAAGLSEPRDAIEDIIEPYMIQ 299

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           QGFIQRTPRGR+L  IAW+HLG+  P 
Sbjct: 300 QGFIQRTPRGRVLTAIAWKHLGLQPPK 326


>gi|150397835|ref|YP_001328302.1| Holliday junction DNA helicase RuvB [Sinorhizobium medicae WSM419]
 gi|166231558|sp|A6UCT7|RUVB_SINMW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|150029350|gb|ABR61467.1| Holliday junction DNA helicase RuvB [Sinorhizobium medicae WSM419]
          Length = 346

 Score =  512 bits (1319), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 250/319 (78%), Positives = 289/319 (90%), Gaps = 1/319 (0%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           ED D +L RP+TL+EFTGQ EA +NLK+FIEAA+ R EALDHVLFVGPPGLGKTTLAQ++
Sbjct: 15  EDVDATL-RPQTLDEFTGQAEARANLKIFIEAARNRGEALDHVLFVGPPGLGKTTLAQIM 73

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A+ELGVNFRSTSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRL+  VEEILYPAMEDFQL
Sbjct: 74  AKELGVNFRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLNPAVEEILYPAMEDFQL 133

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           DL++GEGPSARSVKI+L++FTL+AATTR+GLLT PL+DRFGIP+RLNFY +E+L+ IV+R
Sbjct: 134 DLIIGEGPSARSVKIDLAKFTLVAATTRLGLLTTPLRDRFGIPVRLNFYTVEELELIVRR 193

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
           GA+L GL +TDE A EIA R+RGTPRIAGRLLRRVRDFAEVA A+ +TR+IAD AL RL 
Sbjct: 194 GARLMGLGMTDEGAREIARRARGTPRIAGRLLRRVRDFAEVARAEAVTRQIADEALTRLL 253

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D MG DQLD RYLTMIA+NFGGGPVGIETI+AGLSEPRDAIED+IEPY+IQQGFIQRTP
Sbjct: 254 VDSMGLDQLDRRYLTMIAQNFGGGPVGIETIAAGLSEPRDAIEDIIEPYLIQQGFIQRTP 313

Query: 315 RGRLLMPIAWQHLGIDIPH 333
           RGR+L   AW+HLG++ P 
Sbjct: 314 RGRVLTANAWKHLGLNPPK 332


>gi|332716452|ref|YP_004443918.1| Holliday junction DNA helicase RuvB [Agrobacterium sp. H13-3]
 gi|325063137|gb|ADY66827.1| Holliday junction DNA helicase RuvB [Agrobacterium sp. H13-3]
          Length = 349

 Score =  512 bits (1319), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 252/333 (75%), Positives = 295/333 (88%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D + L+S +   ED D ++ RP++L++FTGQ EA +NLKVFIEAAK R EALDHVLFV
Sbjct: 4   MSDADRLISADKRGEDIDTTM-RPQSLDDFTGQAEARANLKVFIEAAKNRGEALDHVLFV 62

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++A+ELGVNF+STSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRL+  
Sbjct: 63  GPPGLGKTTLAQIMAKELGVNFKSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLNPA 122

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILYPAMEDFQLDL++GEGP+ARSVKI+LS+FTL+AATTR+GLLT PL+DRFGIP+RL
Sbjct: 123 VEEILYPAMEDFQLDLIIGEGPAARSVKIDLSKFTLVAATTRLGLLTTPLRDRFGIPVRL 182

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY +++L+ IV+RGA+L GL +TD+ A EIA R+RGTPRIAGRLLRRVRDFAEVA A+ 
Sbjct: 183 AFYTVDELELIVRRGARLMGLNMTDDGAREIARRARGTPRIAGRLLRRVRDFAEVARAEA 242

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +TREIAD AL RL +DKMG DQLD+RYLTMIA NFGGGPVGIETI+AGLSEPRDAIED+I
Sbjct: 243 VTREIADEALTRLLVDKMGLDQLDMRYLTMIAVNFGGGPVGIETIAAGLSEPRDAIEDII 302

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPYMIQQGFIQRTPRGR+L   AW+HLG+  P 
Sbjct: 303 EPYMIQQGFIQRTPRGRVLTGTAWKHLGMQPPK 335


>gi|209550797|ref|YP_002282714.1| Holliday junction DNA helicase RuvB [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|226698781|sp|B5ZP80|RUVB_RHILW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|209536553|gb|ACI56488.1| Holliday junction DNA helicase RuvB [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 346

 Score =  511 bits (1317), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 253/327 (77%), Positives = 291/327 (88%), Gaps = 1/327 (0%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L+S     ED DI+L RP++L+EFTGQ EA +NLKVFIEAAK R EALDHVLFVGPPGLG
Sbjct: 7   LISPEKRGEDLDITL-RPQSLDEFTGQAEARANLKVFIEAAKNRGEALDHVLFVGPPGLG 65

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTTLAQ++A+ELGVNFRSTSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRL+  VEEILY
Sbjct: 66  KTTLAQIMAKELGVNFRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLNPAVEEILY 125

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           PAMEDFQLDL++GEGP+ARSVKI+LS+FTL+AATTR+GLLT PL+DRFGIP+RL+FY +E
Sbjct: 126 PAMEDFQLDLIIGEGPAARSVKIDLSKFTLVAATTRLGLLTTPLRDRFGIPVRLSFYTVE 185

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +L+ IV+RGA+L  L +T+E A EIA R+RGTPRIAGRLLRRVRDFAEVA A+ +TREIA
Sbjct: 186 ELELIVRRGARLMNLPITEEGAREIARRARGTPRIAGRLLRRVRDFAEVARAEAVTREIA 245

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           D AL RL +D +GFDQLD RYL MIA NFGGGPVGIETI+AGLSEPRDAIED+IEPYMIQ
Sbjct: 246 DEALTRLLVDNVGFDQLDKRYLNMIAVNFGGGPVGIETIAAGLSEPRDAIEDIIEPYMIQ 305

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           QGFIQRTPRGR+L  IAW+HLG+  P 
Sbjct: 306 QGFIQRTPRGRVLTAIAWKHLGMQPPK 332


>gi|116253729|ref|YP_769567.1| Holliday junction DNA helicase RuvB [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|241206205|ref|YP_002977301.1| Holliday junction DNA helicase RuvB [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|123384541|sp|Q1MC52|RUVB_RHIL3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|115258377|emb|CAK09480.1| putative Holliday junction DNA helicase RuvB [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|240860095|gb|ACS57762.1| Holliday junction DNA helicase RuvB [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 346

 Score =  511 bits (1317), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 253/327 (77%), Positives = 291/327 (88%), Gaps = 1/327 (0%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L+S     ED DI+L RP++L+EFTGQ EA +NLKVFIEAAK R EALDHVLFVGPPGLG
Sbjct: 7   LISPEKRGEDLDITL-RPQSLDEFTGQAEARANLKVFIEAAKNRGEALDHVLFVGPPGLG 65

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTTLAQ++A+ELGVNFRSTSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRL+  VEEILY
Sbjct: 66  KTTLAQIMAKELGVNFRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLNPAVEEILY 125

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           PAMEDFQLDL++GEGP+ARSVKI+LS+FTL+AATTR+GLLT PL+DRFGIP+RL+FY +E
Sbjct: 126 PAMEDFQLDLIIGEGPAARSVKIDLSKFTLVAATTRLGLLTTPLRDRFGIPVRLSFYTVE 185

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +L+ IV+RGA+L  L +T+E A EIA R+RGTPRIAGRLLRRVRDFAEVA A+ +TREIA
Sbjct: 186 ELELIVRRGARLMNLPITEEGAREIARRARGTPRIAGRLLRRVRDFAEVARAEAVTREIA 245

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           D AL RL +D +GFDQLD RYL MIA NFGGGPVGIETI+AGLSEPRDAIED+IEPYMIQ
Sbjct: 246 DEALTRLLVDNVGFDQLDKRYLNMIAVNFGGGPVGIETIAAGLSEPRDAIEDIIEPYMIQ 305

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           QGFIQRTPRGR+L  IAW+HLG+  P 
Sbjct: 306 QGFIQRTPRGRVLTAIAWKHLGMQPPK 332


>gi|163758800|ref|ZP_02165887.1| Holliday junction DNA helicase RuvB [Hoeflea phototrophica DFL-43]
 gi|162284090|gb|EDQ34374.1| Holliday junction DNA helicase RuvB [Hoeflea phototrophica DFL-43]
          Length = 345

 Score =  511 bits (1315), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 251/333 (75%), Positives = 295/333 (88%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D + L+S +   ED D S LRP++L+EFTGQ EA +NLKVFIEAAK RAEALDHVLFV
Sbjct: 1   MNDPDRLISPDKRGEDVD-STLRPQSLDEFTGQAEARANLKVFIEAAKGRAEALDHVLFV 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++A+ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL+  
Sbjct: 60  GPPGLGKTTLAQIMAKELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLNPA 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILYPAMEDFQLDL++GEGP+ARSVKI+LSRFTL+AATTR+GLLT PL+DRFGIP+RL
Sbjct: 120 VEEILYPAMEDFQLDLIIGEGPAARSVKIDLSRFTLVAATTRLGLLTTPLRDRFGIPVRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY +E+L+ IV+RGA++ GL +TD+ A EIA R+RGTPRIAGRLLRRVRDFAEVA A+ 
Sbjct: 180 QFYTVEELELIVRRGARIMGLGMTDDGALEIARRARGTPRIAGRLLRRVRDFAEVAKAEA 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +T++IAD AL RL++D +G DQLD RYL MIARNFGGGPVGIETI+AGLSEPRDAIED+I
Sbjct: 240 VTQKIADEALTRLSVDSIGLDQLDRRYLDMIARNFGGGPVGIETIAAGLSEPRDAIEDII 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY+IQQGF+QRTPRGR++   AW H+G++ P 
Sbjct: 300 EPYLIQQGFLQRTPRGRVMTARAWGHIGLNPPK 332


>gi|218462461|ref|ZP_03502552.1| Holliday junction DNA helicase RuvB [Rhizobium etli Kim 5]
          Length = 346

 Score =  510 bits (1314), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 251/327 (76%), Positives = 291/327 (88%), Gaps = 1/327 (0%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L+S     ED D++L RP++L+EFTGQ EA +NLK+FIEAAK R EALDHVLFVGPPGLG
Sbjct: 7   LISPEKRGEDLDVTL-RPQSLDEFTGQAEARANLKIFIEAAKNRGEALDHVLFVGPPGLG 65

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTTLAQ++A+ELGVNFRSTSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRL+  VEEILY
Sbjct: 66  KTTLAQIMAKELGVNFRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLNPAVEEILY 125

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           PAMEDFQLDL++GEGP+ARSVKI+LS+FTL+AATTR+GLLT PL+DRFGIP+RL+FY +E
Sbjct: 126 PAMEDFQLDLIIGEGPAARSVKIDLSKFTLVAATTRLGLLTTPLRDRFGIPVRLSFYTVE 185

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +L+ IV+RGA+L  L +T+E A EIA R+RGTPRIAGRLLRRVRDFAEVA A+ +TREIA
Sbjct: 186 ELELIVRRGARLMNLPITEEGAREIARRARGTPRIAGRLLRRVRDFAEVARAEAVTREIA 245

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           D AL RL +D +GFDQLD RYL MIA NFGGGPVGIETI+AGLSEPRDAIED+IEPYMIQ
Sbjct: 246 DEALTRLLVDNVGFDQLDKRYLNMIAVNFGGGPVGIETIAAGLSEPRDAIEDIIEPYMIQ 305

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           QGFIQRTPRGR+L  IAW+HLG+  P 
Sbjct: 306 QGFIQRTPRGRVLTAIAWKHLGMQPPK 332


>gi|190893295|ref|YP_001979837.1| holliday junction DNA helicase [Rhizobium etli CIAT 652]
 gi|238692541|sp|B3PYZ5|RUVB_RHIE6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|190698574|gb|ACE92659.1| holliday junction DNA helicase protein [Rhizobium etli CIAT 652]
          Length = 346

 Score =  510 bits (1313), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 252/327 (77%), Positives = 291/327 (88%), Gaps = 1/327 (0%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L+S     ED D++L RP++L+EFTGQ EA +NLKVFIEAAK R EALDHVLFVGPPGLG
Sbjct: 7   LISPEKRGEDLDMTL-RPQSLDEFTGQAEARANLKVFIEAAKNRGEALDHVLFVGPPGLG 65

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTTLAQ++A+ELGVNFRSTSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRL+  VEEILY
Sbjct: 66  KTTLAQIMAKELGVNFRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLNPAVEEILY 125

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           PAMEDFQLDL++GEGP+ARSVKI+LS+FTL+AATTR+GLLT PL+DRFGIP+RL+FY +E
Sbjct: 126 PAMEDFQLDLIIGEGPAARSVKIDLSKFTLVAATTRLGLLTTPLRDRFGIPVRLSFYTVE 185

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +L+ IV+RGA+L  L +T+E A EIA R+RGTPRIAGRLLRRVRDFAEVA A+ +TREIA
Sbjct: 186 ELELIVRRGARLMNLPMTEEGAREIARRARGTPRIAGRLLRRVRDFAEVARAEAVTREIA 245

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           D AL RL +D +GFDQLD RYL MIA NFGGGPVGIETI+AGLSEPRDAIED+IEPYMIQ
Sbjct: 246 DEALTRLLVDNVGFDQLDKRYLNMIAVNFGGGPVGIETIAAGLSEPRDAIEDIIEPYMIQ 305

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           QGFIQRTPRGR+L  IAW+HLG+  P 
Sbjct: 306 QGFIQRTPRGRVLTAIAWKHLGMQPPK 332


>gi|86359073|ref|YP_470965.1| Holliday junction DNA helicase B [Rhizobium etli CFN 42]
 gi|20140295|sp|Q9L9C3|RUVB_RHIET RecName: Full=Holliday junction DNA helicase ruvB
 gi|123751943|sp|Q2K4J8|RUVB_RHIEC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|7110155|gb|AAF36814.1|AF175525_2 RuvB [Rhizobium etli]
 gi|86283175|gb|ABC92238.1| holliday junction DNA helicase protein [Rhizobium etli CFN 42]
          Length = 346

 Score =  509 bits (1312), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 252/327 (77%), Positives = 290/327 (88%), Gaps = 1/327 (0%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L+S     ED DI+L RP++L+EFTGQ EA +NLKVFIEAAK R EALDHVLFVGPPGLG
Sbjct: 7   LISPEKRGEDLDITL-RPQSLDEFTGQAEARANLKVFIEAAKNRGEALDHVLFVGPPGLG 65

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTTLAQ++A+ELGVNFRSTSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRL+  VEEILY
Sbjct: 66  KTTLAQIMAKELGVNFRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLNPAVEEILY 125

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           PAMED+QLDL++GEGP+ARSVKI+LS+FTL+AATTR+GLLT PL+DRFGIP+RL FY +E
Sbjct: 126 PAMEDYQLDLIIGEGPAARSVKIDLSKFTLVAATTRLGLLTTPLRDRFGIPVRLTFYTVE 185

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +L+ IV+RGA+L  L +T+E A EIA R+RGTPRIAGRLLRRVRDFAEVA A+ +TREIA
Sbjct: 186 ELELIVRRGARLMNLPMTEEGAREIARRARGTPRIAGRLLRRVRDFAEVARAEAVTREIA 245

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           D AL RL +D +GFDQLD RYL MIA NFGGGPVGIETI+AGLSEPRDAIED+IEPYMIQ
Sbjct: 246 DEALTRLLVDNVGFDQLDKRYLNMIAVNFGGGPVGIETIAAGLSEPRDAIEDIIEPYMIQ 305

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           QGFIQRTPRGR+L  IAW+HLG+  P 
Sbjct: 306 QGFIQRTPRGRVLTAIAWKHLGMQPPK 332


>gi|15891226|ref|NP_356898.1| Holliday junction DNA helicase B [Agrobacterium tumefaciens str.
           C58]
 gi|21759426|sp|Q8U9K6|RUVB_AGRT5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|15159589|gb|AAK89683.1| Holliday junction DNA helicase RuvB [Agrobacterium tumefaciens str.
           C58]
          Length = 346

 Score =  508 bits (1308), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 251/333 (75%), Positives = 292/333 (87%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D + L++     ED D +L RP++L++FTGQ EA +NLKVFIEAAK R EALDHVLFV
Sbjct: 1   MSDADRLITPEKRGEDIDTTL-RPQSLDDFTGQAEARANLKVFIEAAKNRGEALDHVLFV 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++A+ELGVNF+STSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRL+  
Sbjct: 60  GPPGLGKTTLAQIMAKELGVNFKSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLNPA 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILYPAMEDFQLDL++GEGP+ARSVKI+LS+FTL+AATTR+GLLT PL+DRFGIP+RL
Sbjct: 120 VEEILYPAMEDFQLDLIIGEGPAARSVKIDLSKFTLVAATTRLGLLTTPLRDRFGIPVRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY +++L+ IV+RGA+L GL +TD  A EIA R+RGTPRIAGRLLRRVRDFAEVA A+ 
Sbjct: 180 AFYTVDELELIVRRGARLMGLNMTDGGAREIARRARGTPRIAGRLLRRVRDFAEVARAEA 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +TREIAD AL RL +D MG DQLD+RYLTMIA NFGGGPVGIETI+AGLSEPRDAIED+I
Sbjct: 240 VTREIADEALTRLLVDNMGLDQLDMRYLTMIAVNFGGGPVGIETIAAGLSEPRDAIEDII 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPYMIQQGFIQRTPRGR+L   AW+HLG+  P 
Sbjct: 300 EPYMIQQGFIQRTPRGRILTATAWKHLGLQPPK 332


>gi|227823319|ref|YP_002827291.1| Holliday junction DNA helicase RuvB [Sinorhizobium fredii NGR234]
 gi|227342320|gb|ACP26538.1| holliday junction DNA helicase RuvB [Sinorhizobium fredii NGR234]
          Length = 349

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 247/319 (77%), Positives = 288/319 (90%), Gaps = 1/319 (0%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           ED D +L RP++L+EFTGQ EA +NLK+FIEAA+ R EALDHVLFVGPPGLGKTTLAQ++
Sbjct: 18  EDLDATL-RPQSLDEFTGQAEARANLKIFIEAARNRGEALDHVLFVGPPGLGKTTLAQIM 76

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A+ELGVNFRSTSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRL+  VEEILYPAMEDFQL
Sbjct: 77  AKELGVNFRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLNPAVEEILYPAMEDFQL 136

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           DL++GEGP+ARSVKI+L++FTL+AATTR+GLLT PL+DRFGIP+RLNFY +E+L+ IV+R
Sbjct: 137 DLIIGEGPAARSVKIDLAKFTLVAATTRLGLLTTPLRDRFGIPVRLNFYTVEELELIVRR 196

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
           GA+L GL +TDE A EIA R+RGTPRIAGRLLRRVRDFAEVA A+ +TR+IAD AL RL 
Sbjct: 197 GARLMGLGMTDEGAREIARRARGTPRIAGRLLRRVRDFAEVARAEAVTRQIADEALTRLL 256

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D MG DQLD RYL MIA+NFGGGPVGIETI+AGLSEPRDAIED+IEPY+IQQGFIQRTP
Sbjct: 257 VDSMGLDQLDRRYLFMIAQNFGGGPVGIETIAAGLSEPRDAIEDIIEPYLIQQGFIQRTP 316

Query: 315 RGRLLMPIAWQHLGIDIPH 333
           RGR+L   AW+HLG++ P 
Sbjct: 317 RGRVLTANAWKHLGLNPPK 335


>gi|15966502|ref|NP_386855.1| Holliday junction DNA helicase B [Sinorhizobium meliloti 1021]
 gi|307300461|ref|ZP_07580241.1| Holliday junction DNA helicase RuvB [Sinorhizobium meliloti BL225C]
 gi|307318326|ref|ZP_07597761.1| Holliday junction DNA helicase RuvB [Sinorhizobium meliloti AK83]
 gi|20140125|sp|Q92M92|RUVB_RHIME RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|15075773|emb|CAC47328.1| Probable holliday junction DNA helicase [Sinorhizobium meliloti
           1021]
 gi|306896008|gb|EFN26759.1| Holliday junction DNA helicase RuvB [Sinorhizobium meliloti AK83]
 gi|306904627|gb|EFN35211.1| Holliday junction DNA helicase RuvB [Sinorhizobium meliloti BL225C]
          Length = 346

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 247/319 (77%), Positives = 288/319 (90%), Gaps = 1/319 (0%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           ED D ++ RP+TL+EFTGQ EA +NLK+FIEAA+ R EALDHVLFVGPPGLGKTTLAQ++
Sbjct: 15  EDLDATM-RPQTLDEFTGQAEARANLKIFIEAARNRGEALDHVLFVGPPGLGKTTLAQIM 73

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A+ELGVNFRSTSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRL+  VEEILYPAMEDFQL
Sbjct: 74  AKELGVNFRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLNPAVEEILYPAMEDFQL 133

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           DL++GEGP+ARSVKI+L++FTL+AATTR+GLLT PL+DRFGIP+RLNFY +E+L+ IV+R
Sbjct: 134 DLIIGEGPAARSVKIDLAKFTLVAATTRLGLLTTPLRDRFGIPVRLNFYTVEELELIVRR 193

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
           GA+L GL +TDE A EIA R+RGTPRIAGRLLRRVRDFAEVA A+ +T +IAD AL RL 
Sbjct: 194 GARLMGLGMTDEGAREIARRARGTPRIAGRLLRRVRDFAEVARAEAVTLKIADEALTRLL 253

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D MG DQLD RYLTMIA+NFGGGPVGIETI+AGLSEPRDAIED+IEPY+IQQGFIQRTP
Sbjct: 254 VDSMGLDQLDRRYLTMIAQNFGGGPVGIETIAAGLSEPRDAIEDIIEPYLIQQGFIQRTP 313

Query: 315 RGRLLMPIAWQHLGIDIPH 333
           RGR+L   AW+HLG++ P 
Sbjct: 314 RGRVLTANAWKHLGLNPPR 332


>gi|319781020|ref|YP_004140496.1| Holliday junction DNA helicase RuvB [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317166908|gb|ADV10446.1| Holliday junction DNA helicase RuvB [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 345

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 241/319 (75%), Positives = 283/319 (88%), Gaps = 1/319 (0%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           EDA+ +L RP+TL++F GQ  A +NLKVFIEAAK+R+EALDHVLFVGPPGLGKTTLAQ++
Sbjct: 15  EDAEQTL-RPQTLDDFVGQAAARANLKVFIEAAKSRSEALDHVLFVGPPGLGKTTLAQIM 73

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           ARELGVNFRSTSGPVIAKAGDLAALLTNLE+ DVLFIDEIHRLS  VEEILYPAMEDFQL
Sbjct: 74  ARELGVNFRSTSGPVIAKAGDLAALLTNLEEGDVLFIDEIHRLSPAVEEILYPAMEDFQL 133

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           DL++GEGP+ARSVKI+L+RFTL+AATTR+GLLTNPL+DRFGIP+RLNFY +E+L+ IV+R
Sbjct: 134 DLIIGEGPAARSVKIDLARFTLVAATTRLGLLTNPLRDRFGIPVRLNFYTVEELEQIVRR 193

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
           GA++  + + ++ A EIA R+RGTPRIAGRLLRRVRDFA VA    + R+IAD AL RL 
Sbjct: 194 GARILQMPLGNDGALEIARRARGTPRIAGRLLRRVRDFASVAGDGHVDRKIADEALTRLE 253

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D +G D LD RYL+MIARNFGGGPVGIETI+AGLSEPRDAIED+IEPY+IQQGFIQRTP
Sbjct: 254 VDALGLDALDRRYLSMIARNFGGGPVGIETIAAGLSEPRDAIEDIIEPYLIQQGFIQRTP 313

Query: 315 RGRLLMPIAWQHLGIDIPH 333
           RGR+L   AW+HLG+D P 
Sbjct: 314 RGRMLTANAWRHLGLDAPK 332


>gi|239832788|ref|ZP_04681117.1| Holliday junction DNA helicase RuvB [Ochrobactrum intermedium LMG
           3301]
 gi|239825055|gb|EEQ96623.1| Holliday junction DNA helicase RuvB [Ochrobactrum intermedium LMG
           3301]
          Length = 346

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 243/332 (73%), Positives = 287/332 (86%), Gaps = 2/332 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M DR  L++ + S+ D D + LRP+ L++F GQ  A +NLKVFIEAAK R EALDHVLFV
Sbjct: 1   MSDRNPLINPD-SRADED-NTLRPQMLDDFVGQAAARANLKVFIEAAKVRGEALDHVLFV 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++A+ELGVNFRSTSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRLS  
Sbjct: 59  GPPGLGKTTLAQIMAKELGVNFRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSPA 118

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILYPAMEDFQLDL++GEGP+ARSVKI+L++FTL+AATTR+GLLT PL+DRFGIP+RL
Sbjct: 119 VEEILYPAMEDFQLDLIIGEGPAARSVKIDLAKFTLVAATTRLGLLTTPLRDRFGIPVRL 178

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           NFY +E+L+ IV+RGA++  + ++ + A E+A RSRGTPRIAGRLLRRVRDFA VA A  
Sbjct: 179 NFYTVEELEYIVRRGARIMQMGISPDGALEVARRSRGTPRIAGRLLRRVRDFALVAGADV 238

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I R+IAD AL RL +D  G DQLD RYL +IARNFGGGPVGIETI+AGLSEPRDAIED+I
Sbjct: 239 IDRKIADEALSRLEVDNRGLDQLDRRYLNIIARNFGGGPVGIETIAAGLSEPRDAIEDII 298

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EPY+IQQGF+QRTPRGR+L  +AWQHLG+  P
Sbjct: 299 EPYLIQQGFLQRTPRGRVLTAVAWQHLGLPAP 330


>gi|153008544|ref|YP_001369759.1| Holliday junction DNA helicase RuvB [Ochrobactrum anthropi ATCC
           49188]
 gi|166231507|sp|A6WY76|RUVB_OCHA4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|151560432|gb|ABS13930.1| Holliday junction DNA helicase RuvB [Ochrobactrum anthropi ATCC
           49188]
          Length = 346

 Score =  489 bits (1259), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 243/334 (72%), Positives = 285/334 (85%), Gaps = 6/334 (1%)

Query: 1   MMDREGLLS--RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M DR  L+   R V +++     LRP+TL++F GQ  A +NLKVFIEAAK R EALDHVL
Sbjct: 1   MSDRNPLIDADRRVDEDNT----LRPQTLDDFVGQAAARANLKVFIEAAKVRGEALDHVL 56

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
           FVGPPGLGKTTLAQ++A+ELGVNFRSTSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRLS
Sbjct: 57  FVGPPGLGKTTLAQIMAKELGVNFRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLS 116

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
             VEEILYPAMEDFQLDL++GEGP+ARSVKI+L++FTL+AATTR+GLLT PL+DRFGIP 
Sbjct: 117 PAVEEILYPAMEDFQLDLIIGEGPAARSVKIDLAKFTLVAATTRLGLLTTPLRDRFGIPT 176

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           RLNFY +E+L+ IV+RGA++  + ++ + A E+A RSRGTPRIAGRLLRRVRDFA VA A
Sbjct: 177 RLNFYTVEELEYIVRRGARIMQMGISPDGALEVARRSRGTPRIAGRLLRRVRDFALVAGA 236

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             I R+IAD AL RL +D  G DQLD RYL +IARNFGGGPVGIETI+AGLSEPRDAIED
Sbjct: 237 DVIDRKIADEALSRLEVDNRGLDQLDRRYLNIIARNFGGGPVGIETIAAGLSEPRDAIED 296

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           +IEPY+IQQGF+QRTPRGR+L  +AWQHLG+  P
Sbjct: 297 IIEPYLIQQGFLQRTPRGRVLTAVAWQHLGLPAP 330


>gi|23502560|ref|NP_698687.1| Holliday junction DNA helicase RuvB [Brucella suis 1330]
 gi|62290574|ref|YP_222367.1| Holliday junction DNA helicase RuvB [Brucella abortus bv. 1 str.
           9-941]
 gi|82700490|ref|YP_415064.1| Holliday junction DNA helicase RuvB [Brucella melitensis biovar
           Abortus 2308]
 gi|148559079|ref|YP_001259555.1| Holliday junction DNA helicase RuvB [Brucella ovis ATCC 25840]
 gi|161619631|ref|YP_001593518.1| Holliday junction DNA helicase B [Brucella canis ATCC 23365]
 gi|163845282|ref|YP_001622937.1| Holliday junction DNA helicase RuvB [Brucella suis ATCC 23445]
 gi|189024792|ref|YP_001935560.1| Holliday junction DNA helicase RuvB [Brucella abortus S19]
 gi|225628271|ref|ZP_03786305.1| Holliday junction DNA helicase RuvB [Brucella ceti str. Cudo]
 gi|237816079|ref|ZP_04595075.1| Holliday junction DNA helicase RuvB [Brucella abortus str. 2308 A]
 gi|254689870|ref|ZP_05153124.1| Holliday junction DNA helicase RuvB [Brucella abortus bv. 6 str.
           870]
 gi|254694363|ref|ZP_05156191.1| Holliday junction DNA helicase RuvB [Brucella abortus bv. 3 str.
           Tulya]
 gi|254698021|ref|ZP_05159849.1| Holliday junction DNA helicase RuvB [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254700363|ref|ZP_05162191.1| Holliday junction DNA helicase RuvB [Brucella suis bv. 5 str. 513]
 gi|254703481|ref|ZP_05165309.1| Holliday junction DNA helicase RuvB [Brucella suis bv. 3 str. 686]
 gi|254708430|ref|ZP_05170258.1| Holliday junction DNA helicase RuvB [Brucella pinnipedialis
           M163/99/10]
 gi|254708716|ref|ZP_05170527.1| Holliday junction DNA helicase RuvB [Brucella pinnipedialis B2/94]
 gi|254714563|ref|ZP_05176374.1| Holliday junction DNA helicase RuvB [Brucella ceti M644/93/1]
 gi|254717460|ref|ZP_05179271.1| Holliday junction DNA helicase RuvB [Brucella ceti M13/05/1]
 gi|254730905|ref|ZP_05189483.1| Holliday junction DNA helicase RuvB [Brucella abortus bv. 4 str.
           292]
 gi|256030242|ref|ZP_05443856.1| Holliday junction DNA helicase RuvB [Brucella pinnipedialis
           M292/94/1]
 gi|256061739|ref|ZP_05451876.1| Holliday junction DNA helicase RuvB [Brucella neotomae 5K33]
 gi|256160417|ref|ZP_05458106.1| Holliday junction DNA helicase RuvB [Brucella ceti M490/95/1]
 gi|256255623|ref|ZP_05461159.1| Holliday junction DNA helicase RuvB [Brucella ceti B1/94]
 gi|256258124|ref|ZP_05463660.1| Holliday junction DNA helicase RuvB [Brucella abortus bv. 9 str.
           C68]
 gi|256370111|ref|YP_003107622.1| Holliday junction DNA helicase RuvB [Brucella microti CCM 4915]
 gi|260167917|ref|ZP_05754728.1| Holliday junction DNA helicase RuvB [Brucella sp. F5/99]
 gi|260547182|ref|ZP_05822920.1| Holliday junction DNA helicase RuvB [Brucella abortus NCTC 8038]
 gi|260568787|ref|ZP_05839255.1| Holliday junction DNA helicase RuvB [Brucella suis bv. 4 str. 40]
 gi|260755402|ref|ZP_05867750.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella abortus
           bv. 6 str. 870]
 gi|260758624|ref|ZP_05870972.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella abortus
           bv. 4 str. 292]
 gi|260762456|ref|ZP_05874793.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|260884417|ref|ZP_05896031.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella abortus
           bv. 9 str. C68]
 gi|261214673|ref|ZP_05928954.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella abortus
           bv. 3 str. Tulya]
 gi|261219292|ref|ZP_05933573.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella ceti
           M13/05/1]
 gi|261222826|ref|ZP_05937107.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella ceti
           B1/94]
 gi|261315929|ref|ZP_05955126.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella
           pinnipedialis M163/99/10]
 gi|261316208|ref|ZP_05955405.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella
           pinnipedialis B2/94]
 gi|261322353|ref|ZP_05961550.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella ceti
           M644/93/1]
 gi|261325743|ref|ZP_05964940.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella
           neotomae 5K33]
 gi|261750858|ref|ZP_05994567.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella suis
           bv. 5 str. 513]
 gi|261754111|ref|ZP_05997820.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella suis
           bv. 3 str. 686]
 gi|261757356|ref|ZP_06001065.1| holliday junction DNA helicase RuvB [Brucella sp. F5/99]
 gi|265987270|ref|ZP_06099827.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella
           pinnipedialis M292/94/1]
 gi|265998785|ref|ZP_06111342.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella ceti
           M490/95/1]
 gi|297248973|ref|ZP_06932681.1| Holliday junction DNA helicase RuvB [Brucella abortus bv. 5 str.
           B3196]
 gi|306841421|ref|ZP_07474123.1| Holliday junction DNA helicase RuvB [Brucella sp. BO2]
 gi|306844694|ref|ZP_07477279.1| Holliday junction DNA helicase RuvB [Brucella sp. BO1]
 gi|29336738|sp|Q8FZ02|RUVB_BRUSU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|81309382|sp|Q57BH8|RUVB_BRUAB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|97189931|sp|Q2YRD2|RUVB_BRUA2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|166231466|sp|A5VS58|RUVB_BRUO2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|189045782|sp|A9M7K0|RUVB_BRUC2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|189045875|sp|A9WWH9|RUVB_BRUSI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|238689392|sp|B2S7D9|RUVB_BRUA1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|23348561|gb|AAN30602.1| Holliday junction DNA helicase RuvB [Brucella suis 1330]
 gi|62196706|gb|AAX75006.1| RuvB, Holliday junction DNA helicase [Brucella abortus bv. 1 str.
           9-941]
 gi|82616591|emb|CAJ11670.1| CbxX/CfqX superfamily:Disease resistance protein:ATP/GTP-binding
           site motif A (P-loop):AAA ATPase:AAA ATPase, central
           region: [Brucella melitensis biovar Abortus 2308]
 gi|148370336|gb|ABQ60315.1| holliday junction DNA helicase RuvB [Brucella ovis ATCC 25840]
 gi|161336442|gb|ABX62747.1| Holliday junction DNA helicase RuvB [Brucella canis ATCC 23365]
 gi|163676005|gb|ABY40115.1| Holliday junction DNA helicase RuvB [Brucella suis ATCC 23445]
 gi|189020364|gb|ACD73086.1| Holliday junction DNA helicase RuvB [Brucella abortus S19]
 gi|225616117|gb|EEH13165.1| Holliday junction DNA helicase RuvB [Brucella ceti str. Cudo]
 gi|237788742|gb|EEP62954.1| Holliday junction DNA helicase RuvB [Brucella abortus str. 2308 A]
 gi|256000274|gb|ACU48673.1| Holliday junction DNA helicase RuvB [Brucella microti CCM 4915]
 gi|260095547|gb|EEW79425.1| Holliday junction DNA helicase RuvB [Brucella abortus NCTC 8038]
 gi|260154171|gb|EEW89253.1| Holliday junction DNA helicase RuvB [Brucella suis bv. 4 str. 40]
 gi|260668942|gb|EEX55882.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella abortus
           bv. 4 str. 292]
 gi|260672882|gb|EEX59703.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|260675510|gb|EEX62331.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella abortus
           bv. 6 str. 870]
 gi|260873945|gb|EEX81014.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella abortus
           bv. 9 str. C68]
 gi|260916280|gb|EEX83141.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella abortus
           bv. 3 str. Tulya]
 gi|260921410|gb|EEX88063.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella ceti
           B1/94]
 gi|260924381|gb|EEX90949.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella ceti
           M13/05/1]
 gi|261295043|gb|EEX98539.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella ceti
           M644/93/1]
 gi|261295431|gb|EEX98927.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella
           pinnipedialis B2/94]
 gi|261301723|gb|EEY05220.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella
           neotomae 5K33]
 gi|261304955|gb|EEY08452.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella
           pinnipedialis M163/99/10]
 gi|261737340|gb|EEY25336.1| holliday junction DNA helicase RuvB [Brucella sp. F5/99]
 gi|261740611|gb|EEY28537.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella suis
           bv. 5 str. 513]
 gi|261743864|gb|EEY31790.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella suis
           bv. 3 str. 686]
 gi|262553474|gb|EEZ09243.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella ceti
           M490/95/1]
 gi|264659467|gb|EEZ29728.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella
           pinnipedialis M292/94/1]
 gi|297174106|gb|EFH33463.1| Holliday junction DNA helicase RuvB [Brucella abortus bv. 5 str.
           B3196]
 gi|306274866|gb|EFM56636.1| Holliday junction DNA helicase RuvB [Brucella sp. BO1]
 gi|306288527|gb|EFM59879.1| Holliday junction DNA helicase RuvB [Brucella sp. BO2]
          Length = 346

 Score =  489 bits (1258), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 243/332 (73%), Positives = 285/332 (85%), Gaps = 2/332 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M DR  L+  +  + D D + LRP+TL++F GQ  A +NLKVFIEAAK R EALDHVLFV
Sbjct: 1   MSDRNPLIDAD-RRADED-NTLRPQTLDDFVGQAAARANLKVFIEAAKVRGEALDHVLFV 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++A+ELGVNFRSTSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRLS  
Sbjct: 59  GPPGLGKTTLAQIMAKELGVNFRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSPA 118

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILYPAMEDFQLDL++GEGP+ARSVKI+L++FTL+AATTR+GLLT PL+DRFGIP+RL
Sbjct: 119 VEEILYPAMEDFQLDLIIGEGPAARSVKIDLAKFTLVAATTRLGLLTTPLRDRFGIPVRL 178

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           NFY +E+L+ IV+RGA++  + ++ + A E+A RSRGTPRIAGRLLRRVRDFA VA A  
Sbjct: 179 NFYTVEELEYIVRRGARIMQMGISSDGAREVARRSRGTPRIAGRLLRRVRDFALVAGADI 238

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I R IAD AL RL +D  G DQLD RYL +IARNFGGGPVGIETI+AGLSEPRDAIED+I
Sbjct: 239 IDRRIADEALSRLEVDNRGLDQLDRRYLNIIARNFGGGPVGIETIAAGLSEPRDAIEDII 298

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EPY+IQQGF+QRTPRGR+L  +AWQHLG+  P
Sbjct: 299 EPYLIQQGFLQRTPRGRVLTAVAWQHLGLPAP 330


>gi|254719705|ref|ZP_05181516.1| Holliday junction DNA helicase RuvB [Brucella sp. 83/13]
 gi|265984720|ref|ZP_06097455.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella sp.
           83/13]
 gi|306837836|ref|ZP_07470698.1| Holliday junction DNA helicase RuvB [Brucella sp. NF 2653]
 gi|264663312|gb|EEZ33573.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella sp.
           83/13]
 gi|306407075|gb|EFM63292.1| Holliday junction DNA helicase RuvB [Brucella sp. NF 2653]
          Length = 346

 Score =  488 bits (1257), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 243/333 (72%), Positives = 285/333 (85%), Gaps = 4/333 (1%)

Query: 1   MMDREGLLSRN-VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M DR  L+  +  + ED   + LRP+TL++F GQ  A +NLKVFIEAAK R EALDHVLF
Sbjct: 1   MSDRNPLIDADRCADED---NTLRPQTLDDFVGQAAARANLKVFIEAAKVRGEALDHVLF 57

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
           VGPPGLGKTTLAQ++A+ELGVNFRSTSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRLS 
Sbjct: 58  VGPPGLGKTTLAQIMAKELGVNFRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSP 117

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEEILYPAMEDFQLDL++GEGP+ARSVKI+L++FTL+AATTR+GLLT PL+DRFGIP+R
Sbjct: 118 AVEEILYPAMEDFQLDLIIGEGPAARSVKIDLAKFTLVAATTRLGLLTTPLRDRFGIPVR 177

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           LNFY +E+L+ IV+RGA++  + ++ + A E+A RSRGTPRIAGRLLRRVRDFA VA A 
Sbjct: 178 LNFYTVEELEYIVRRGARIMQMGISSDGAREVARRSRGTPRIAGRLLRRVRDFALVAGAD 237

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I R IAD AL RL +D  G DQLD RYL +IARNFGGGPVGIETI+AGLSEPRDAIED+
Sbjct: 238 IIDRRIADEALSRLEVDNRGLDQLDRRYLNIIARNFGGGPVGIETIAAGLSEPRDAIEDI 297

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           IEPY+IQQGF+QRTPRGR+L  +AWQHLG+  P
Sbjct: 298 IEPYLIQQGFLQRTPRGRVLTAVAWQHLGLPAP 330


>gi|294850953|ref|ZP_06791629.1| Holliday junction DNA helicase RuvB [Brucella sp. NVSL 07-0026]
 gi|294821596|gb|EFG38592.1| Holliday junction DNA helicase RuvB [Brucella sp. NVSL 07-0026]
          Length = 346

 Score =  488 bits (1256), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 242/332 (72%), Positives = 285/332 (85%), Gaps = 2/332 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M DR  L+  +  + D D + LRP+TL++F GQ  A +NLKVFIEAAK R EALDHVLF+
Sbjct: 1   MSDRNPLIDAD-RRADED-NTLRPQTLDDFVGQAAARANLKVFIEAAKVRGEALDHVLFI 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++A+ELGVNFRSTSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRLS  
Sbjct: 59  GPPGLGKTTLAQIMAKELGVNFRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSPA 118

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILYPAMEDFQLDL++GEGP+ARSVKI+L++FTL+AATTR+GLLT PL+DRFGIP+RL
Sbjct: 119 VEEILYPAMEDFQLDLIIGEGPAARSVKIDLAKFTLVAATTRLGLLTTPLRDRFGIPVRL 178

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           NFY +E+L+ IV+RGA++  + ++ + A E+A RSRGTPRIAGRLLRRVRDFA VA A  
Sbjct: 179 NFYTVEELEYIVRRGARIMQMGISSDGAREVARRSRGTPRIAGRLLRRVRDFALVAGADI 238

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I R IAD AL RL +D  G DQLD RYL +IARNFGGGPVGIETI+AGLSEPRDAIED+I
Sbjct: 239 IDRRIADEALSRLEVDNRGLDQLDRRYLNIIARNFGGGPVGIETIAAGLSEPRDAIEDII 298

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EPY+IQQGF+QRTPRGR+L  +AWQHLG+  P
Sbjct: 299 EPYLIQQGFLQRTPRGRVLTAVAWQHLGLPAP 330


>gi|17986617|ref|NP_539251.1| Holliday junction DNA helicase RuvB [Brucella melitensis bv. 1 str.
           16M]
 gi|225853158|ref|YP_002733391.1| Holliday junction DNA helicase RuvB [Brucella melitensis ATCC
           23457]
 gi|256045312|ref|ZP_05448206.1| Holliday junction DNA helicase RuvB [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256114270|ref|ZP_05455015.1| Holliday junction DNA helicase RuvB [Brucella melitensis bv. 3 str.
           Ether]
 gi|256263351|ref|ZP_05465883.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella
           melitensis bv. 2 str. 63/9]
 gi|260565797|ref|ZP_05836280.1| Holliday junction ATP-dependent DNA helicase ruvB [Brucella
           melitensis bv. 1 str. 16M]
 gi|265991737|ref|ZP_06104294.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|265995574|ref|ZP_06108131.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella
           melitensis bv. 3 str. Ether]
 gi|20140058|sp|Q8YIV5|RUVB_BRUME RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|254767415|sp|C0REW5|RUVB_BRUMB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|17982230|gb|AAL51515.1| holliday junction DNA helicase ruvb [Brucella melitensis bv. 1 str.
           16M]
 gi|225641523|gb|ACO01437.1| Holliday junction DNA helicase RuvB [Brucella melitensis ATCC
           23457]
 gi|260151170|gb|EEW86265.1| Holliday junction ATP-dependent DNA helicase ruvB [Brucella
           melitensis bv. 1 str. 16M]
 gi|262766858|gb|EEZ12476.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella
           melitensis bv. 3 str. Ether]
 gi|263002693|gb|EEZ15096.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|263093350|gb|EEZ17419.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella
           melitensis bv. 2 str. 63/9]
 gi|326409715|gb|ADZ66780.1| Holliday junction DNA helicase RuvB [Brucella melitensis M28]
 gi|326539422|gb|ADZ87637.1| holliday junction DNA helicase RuvB [Brucella melitensis M5-90]
          Length = 346

 Score =  487 bits (1254), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 242/332 (72%), Positives = 284/332 (85%), Gaps = 2/332 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M DR  L+  +  + D D + LRP+TL++F GQ  A +NLKVFIEAAK R EALDHVLFV
Sbjct: 1   MSDRNPLIDAD-RRADED-NTLRPQTLDDFVGQAAARANLKVFIEAAKVRGEALDHVLFV 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++A+ELGVNFRSTSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRLS  
Sbjct: 59  GPPGLGKTTLAQIMAKELGVNFRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSPA 118

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILYPAMEDFQLDL++GEGP+ARSVKI+L++FTL+AATTR+GLLT PL+DRFGIP+RL
Sbjct: 119 VEEILYPAMEDFQLDLIIGEGPAARSVKIDLAKFTLVAATTRLGLLTTPLRDRFGIPVRL 178

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           NFY +E+L+ IV+RGA++  + ++ + A E+A RSRGTPRI GRLLRRVRDFA VA A  
Sbjct: 179 NFYTVEELEYIVRRGARIMQMGISSDGAREVARRSRGTPRIVGRLLRRVRDFALVAGADI 238

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I R IAD AL RL +D  G DQLD RYL +IARNFGGGPVGIETI+AGLSEPRDAIED+I
Sbjct: 239 IDRRIADEALSRLEVDNRGLDQLDRRYLNIIARNFGGGPVGIETIAAGLSEPRDAIEDII 298

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EPY+IQQGF+QRTPRGR+L  +AWQHLG+  P
Sbjct: 299 EPYLIQQGFLQRTPRGRVLTAVAWQHLGLPAP 330


>gi|114706319|ref|ZP_01439221.1| holliday junction DNA helicase protein [Fulvimarina pelagi
           HTCC2506]
 gi|114538180|gb|EAU41302.1| holliday junction DNA helicase protein [Fulvimarina pelagi
           HTCC2506]
          Length = 348

 Score =  487 bits (1253), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 240/332 (72%), Positives = 286/332 (86%), Gaps = 1/332 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M +   L++     ED D++L RP+ L+EF GQ +A +NLKVFI AAKAR EALDHVLFV
Sbjct: 1   MSETSRLIAPEKRGEDIDMTL-RPQALDEFVGQAQARANLKVFIGAAKARGEALDHVLFV 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++A+ELGVNFR+TSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRL+  
Sbjct: 60  GPPGLGKTTLAQIMAKELGVNFRATSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLNPA 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILYPAMEDFQLDL++GEGP+ARSVKI+LS+FTL+AATTR+GLLT PL+DRFGIP+RL
Sbjct: 120 VEEILYPAMEDFQLDLIIGEGPAARSVKIDLSKFTLVAATTRIGLLTTPLRDRFGIPVRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           NFY + +L+ IV RGA+L GLA+    + EIA RSRGTPRIAGRLLRRVRDFAE A A T
Sbjct: 180 NFYTVAELEHIVTRGARLMGLAMDKAGSQEIARRSRGTPRIAGRLLRRVRDFAEFAGAGT 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +TR+IAD AL RL +D +G DQLD RYL +IA NFGGGPVGIETI+A LSEPRDAIED++
Sbjct: 240 VTRQIADEALSRLEVDSLGLDQLDRRYLDLIALNFGGGPVGIETIAAALSEPRDAIEDIV 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EPY++QQGFIQRTPRGRL+  +A++HLG+ +P
Sbjct: 300 EPYLLQQGFIQRTPRGRLITQVAFRHLGLALP 331


>gi|13473338|ref|NP_104905.1| Holliday junction DNA helicase RuvB [Mesorhizobium loti MAFF303099]
 gi|20140185|sp|Q98F76|RUVB_RHILO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|14024087|dbj|BAB50691.1| Holliday branch migration protein; RuvB [Mesorhizobium loti
           MAFF303099]
          Length = 345

 Score =  486 bits (1251), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 241/319 (75%), Positives = 278/319 (87%), Gaps = 1/319 (0%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           EDAD +L RP+TL +F GQ    +NLKVFIEAAK R EALDHVLFVGPPGLGKTTLAQ++
Sbjct: 15  EDADQTL-RPQTLADFVGQAAVRANLKVFIEAAKGRNEALDHVLFVGPPGLGKTTLAQIM 73

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           ARELGVNFRSTSGPVIAKAGDLAALLTNLE+ DVLFIDEIHRL+  VEEILYPAMEDFQL
Sbjct: 74  ARELGVNFRSTSGPVIAKAGDLAALLTNLEEGDVLFIDEIHRLNPAVEEILYPAMEDFQL 133

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           DL++GEGP+ARSVKI+L+RFTL+AATTR+GLLTNPL+DRFGIP+RLNFY +E+L+ IV+R
Sbjct: 134 DLIIGEGPAARSVKIDLARFTLVAATTRLGLLTNPLRDRFGIPVRLNFYTVEELEQIVRR 193

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
           GA++  + + D+ A EIA R+RGTPRIAGRLLRRVRDFA VA    + R IAD AL RL 
Sbjct: 194 GARILQMPLGDDGALEIARRARGTPRIAGRLLRRVRDFASVAGDGHVDRLIADEALTRLE 253

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D +G D LD RYL+MIARNFGGGPVGIETI+AGLSEPRDAIED+IEPY+IQQGFIQRTP
Sbjct: 254 VDALGLDALDRRYLSMIARNFGGGPVGIETIAAGLSEPRDAIEDIIEPYLIQQGFIQRTP 313

Query: 315 RGRLLMPIAWQHLGIDIPH 333
           RGR+L   AW+HLG+D P 
Sbjct: 314 RGRMLTANAWRHLGLDAPK 332


>gi|110635505|ref|YP_675713.1| Holliday junction DNA helicase B [Mesorhizobium sp. BNC1]
 gi|122965617|sp|Q11DH7|RUVB_MESSB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|110286489|gb|ABG64548.1| Holliday junction DNA helicase subunit RuvB [Chelativorans sp.
           BNC1]
          Length = 345

 Score =  485 bits (1249), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 236/319 (73%), Positives = 281/319 (88%), Gaps = 1/319 (0%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           ED D ++ RP++L+EF GQ  A +NLKVFIEAA++R EALDHVLFVGPPGLGKTTLAQ++
Sbjct: 15  EDIDTTM-RPQSLDEFVGQKTARANLKVFIEAARSRGEALDHVLFVGPPGLGKTTLAQIM 73

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           ARELGVNFRSTSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRL+  VEEILYPAMED+QL
Sbjct: 74  ARELGVNFRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLNPAVEEILYPAMEDYQL 133

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           DL++GEGP+ARSVKI+L++FTL+AATTR+GLLT PL+DRFGIPIRL FY +++L+ IV R
Sbjct: 134 DLIIGEGPAARSVKIDLAKFTLVAATTRLGLLTTPLRDRFGIPIRLEFYTVDELQAIVTR 193

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
           GA++ G+ + ++ A EIA R+RGTPRIAGRLLRRVRDFA VA A+ +TR+IADAAL RL 
Sbjct: 194 GARIMGMPLAEDGAEEIARRARGTPRIAGRLLRRVRDFAYVAGAENVTRQIADAALSRLE 253

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D +G DQLD RYL MI  NFGGGPVGIETI+A LSEPRDAIED+IEPY+IQQGFIQRTP
Sbjct: 254 VDALGLDQLDRRYLHMIVENFGGGPVGIETIAAALSEPRDAIEDIIEPYLIQQGFIQRTP 313

Query: 315 RGRLLMPIAWQHLGIDIPH 333
           RGR+L   AW+HLG++ P 
Sbjct: 314 RGRVLAAKAWRHLGLNPPK 332


>gi|260467058|ref|ZP_05813238.1| Holliday junction DNA helicase RuvB [Mesorhizobium opportunistum
           WSM2075]
 gi|259029167|gb|EEW30463.1| Holliday junction DNA helicase RuvB [Mesorhizobium opportunistum
           WSM2075]
          Length = 345

 Score =  485 bits (1248), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 240/319 (75%), Positives = 279/319 (87%), Gaps = 1/319 (0%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           EDA+ +L RP+TL++F GQ    +NLKVFIEAAK R EALDHVLFVGPPGLGKTTLAQ++
Sbjct: 15  EDAEQTL-RPQTLDDFVGQAAVRANLKVFIEAAKGRNEALDHVLFVGPPGLGKTTLAQIM 73

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           ARELGVNFRSTSGPVIAKAGDLAALLTNLE+ DVLFIDEIHRL+  VEEILYPAMEDFQL
Sbjct: 74  ARELGVNFRSTSGPVIAKAGDLAALLTNLEEGDVLFIDEIHRLNPAVEEILYPAMEDFQL 133

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           DL++GEGP+ARSVKI+L+RFTL+AATTR+GLLTNPL+DRFGIP+RLNFY +E+L+ IV+R
Sbjct: 134 DLIIGEGPAARSVKIDLARFTLVAATTRLGLLTNPLRDRFGIPVRLNFYTVEELEQIVRR 193

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
           GA++  + + D+ A EIA R+RGTPRIAGRLLRRVRDFA VA    + R IAD AL RL 
Sbjct: 194 GARILQMPLGDDGALEIARRARGTPRIAGRLLRRVRDFASVAGDGHVDRLIADEALTRLE 253

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D +G D LD RYL+MIARNFGGGPVGIETI+AGLSEPRDAIED+IEPY+IQQGFIQRTP
Sbjct: 254 VDALGLDALDRRYLSMIARNFGGGPVGIETIAAGLSEPRDAIEDIIEPYLIQQGFIQRTP 313

Query: 315 RGRLLMPIAWQHLGIDIPH 333
           RGR+L   AW+HLG+D P 
Sbjct: 314 RGRMLTGNAWRHLGLDAPK 332


>gi|90418967|ref|ZP_01226878.1| Holliday junction specific DNA helicase, subunit ruvB [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90337047|gb|EAS50752.1| Holliday junction specific DNA helicase, subunit ruvB [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 357

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 236/332 (71%), Positives = 282/332 (84%), Gaps = 1/332 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           +M    L++     ED D +L RP+ L++F GQ  A +NLK+FIEAAK R EALDHVLFV
Sbjct: 9   LMSDARLITPEKHGEDIDATL-RPQRLDDFVGQAAARANLKIFIEAAKNRGEALDHVLFV 67

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++A+ELGVNFRSTSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRLS  
Sbjct: 68  GPPGLGKTTLAQIMAKELGVNFRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSPA 127

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILYPAMEDFQLDL++GEGP+ARSVKI+LS+FTL+AATTR+GLLT PL+DRFGIP+RL
Sbjct: 128 VEEILYPAMEDFQLDLIIGEGPAARSVKIDLSKFTLVAATTRLGLLTTPLRDRFGIPVRL 187

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           NFY + +L+ IV RGA+L  L + ++ A EIA R+RGTPRIAGRLLRRVRDFA+VA A T
Sbjct: 188 NFYTVAELEHIVTRGARLMRLPMAEDGAREIARRARGTPRIAGRLLRRVRDFADVAGAAT 247

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           + R++AD AL RL +D +G DQLD RYL +IA NFGGGPVGIETI+A LSEPRDAIED++
Sbjct: 248 VDRKVADEALSRLEVDSLGLDQLDRRYLELIAMNFGGGPVGIETIAAALSEPRDAIEDIV 307

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EPY++QQGF+QRTPRGRLL   A+ HLG+ +P
Sbjct: 308 EPYLLQQGFLQRTPRGRLLTQRAFAHLGLAVP 339


>gi|328542538|ref|YP_004302647.1| Holliday junction ATP-dependent DNA helicase ruvB [polymorphum
           gilvum SL003B-26A1]
 gi|326412284|gb|ADZ69347.1| Holliday junction ATP-dependent DNA helicase ruvB [Polymorphum
           gilvum SL003B-26A1]
          Length = 347

 Score =  475 bits (1222), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 231/334 (69%), Positives = 284/334 (85%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D + +++  +  ++ D ++ RP+ L+EF GQ +A +NLK+FIEAAKAR EALDHVLFV
Sbjct: 1   MDDNQRIVTPQIRGDEIDTTM-RPQALDEFVGQAQARANLKIFIEAAKARGEALDHVLFV 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++ARELGVNFR+TSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRLS  
Sbjct: 60  GPPGLGKTTLAQIMARELGVNFRATSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSPA 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDFQLDL++GEGP+ARSVKI+L++FTL+AATTR+GLLT PL+DRFGIP+RL
Sbjct: 120 VEEVLYPAMEDFQLDLIIGEGPAARSVKIDLAKFTLVAATTRLGLLTTPLRDRFGIPVRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY +E+L+ IV RGA++ G+ +  + A EIA RSRGTPRIAGRLLRRVRDFA VA  + 
Sbjct: 180 EFYTVEELELIVNRGARILGIGMAPDGAREIAKRSRGTPRIAGRLLRRVRDFAVVAGKQA 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           + RE+AD AL +L +D  G D LD RYLT IA NFGGGPVGIETI+A LSEPRDAIE+++
Sbjct: 240 VDREVADRALSQLEVDGAGLDSLDRRYLTQIALNFGGGPVGIETIAAALSEPRDAIEEIV 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           EPY+IQ GF+QRTPRGRLL  +A++HLG+ +P R
Sbjct: 300 EPYLIQNGFLQRTPRGRLLTALAFRHLGLAVPQR 333


>gi|118588332|ref|ZP_01545741.1| Holliday junction DNA helicase B [Stappia aggregata IAM 12614]
 gi|118439038|gb|EAV45670.1| Holliday junction DNA helicase B [Stappia aggregata IAM 12614]
          Length = 346

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 230/334 (68%), Positives = 283/334 (84%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D   +++  +  ++ D S +RP+ L++F GQ +A +NLKVFI AAKAR EALDHVLFV
Sbjct: 1   MSDDTRIVTPEIRGDEID-STMRPQVLDDFVGQAQARANLKVFIGAAKARGEALDHVLFV 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++ARELGVNFR+TSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRL+  
Sbjct: 60  GPPGLGKTTLAQIMARELGVNFRATSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLNPA 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDFQLDL++GEGP+ARSVKI+L++FTL+AATTR+GLLT PL+DRFGIP+RL
Sbjct: 120 VEEVLYPAMEDFQLDLIIGEGPAARSVKIDLAKFTLVAATTRLGLLTTPLRDRFGIPVRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY + +L+ IV+RGA + G+ + +E A EIA RSRGTPRIAGRLLRRVRDFA VA  + 
Sbjct: 180 QFYTVPELEHIVKRGASILGIGMVEEGAREIAKRSRGTPRIAGRLLRRVRDFAIVAGVER 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           + RE+AD ALL+L +D  G D LD RYL+ IA NFGGGPVGIETI+A LSEPRDAIE+++
Sbjct: 240 VDRELADRALLQLEVDSAGLDSLDRRYLSQIAVNFGGGPVGIETIAAALSEPRDAIEEIV 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           EPY+IQ GF+QRTPRGR+L P+A++HLG+  P R
Sbjct: 300 EPYLIQNGFLQRTPRGRILTPMAFEHLGLAAPSR 333


>gi|182677134|ref|YP_001831280.1| Holliday junction DNA helicase RuvB [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|226725454|sp|B2IBR9|RUVB_BEII9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|182633017|gb|ACB93791.1| Holliday junction DNA helicase RuvB [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 350

 Score =  469 bits (1208), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 239/330 (72%), Positives = 274/330 (83%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           E L++  V  ED   + LRP TL +FTGQ  A  NL VFI AAKAR EALDHVLFVGPPG
Sbjct: 6   ERLVTSEVRDEDMTEASLRPLTLADFTGQAAARQNLSVFIAAAKARREALDHVLFVGPPG 65

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLAQ+VARELGVNFRSTSGPVIAKAGDLAA LT LE+RDVLFIDEIHRL+  VEEI
Sbjct: 66  LGKTTLAQIVARELGVNFRSTSGPVIAKAGDLAAQLTALEERDVLFIDEIHRLNPAVEEI 125

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPAMEDFQLDL++GEGP ARSVKI+L+RFTL+ ATTR GLLT PL+DRFGIPIRL FY 
Sbjct: 126 LYPAMEDFQLDLIIGEGPGARSVKIDLARFTLVGATTRAGLLTTPLRDRFGIPIRLEFYT 185

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           IE+L+ IV RGA++ GLA+  E A EIA R+RGTPRIAGRLLRRVRDFA V   +++TR 
Sbjct: 186 IEELERIVLRGARVQGLALEKEGANEIAKRARGTPRIAGRLLRRVRDFAIVDGVESVTRT 245

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +AD AL  L +D +G DQ+D RYL +IA +FGGGPVGIETI+A LSEPRDAIED+IEPY+
Sbjct: 246 LADKALSLLDVDPIGLDQMDRRYLNVIALSFGGGPVGIETIAAALSEPRDAIEDIIEPYL 305

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           IQQGF+QRTPRGRLL P A++HLG+  P R
Sbjct: 306 IQQGFLQRTPRGRLLTPHAFRHLGLKEPVR 335


>gi|254473086|ref|ZP_05086484.1| Holliday junction DNA helicase RuvB [Pseudovibrio sp. JE062]
 gi|211957807|gb|EEA93009.1| Holliday junction DNA helicase RuvB [Pseudovibrio sp. JE062]
          Length = 348

 Score =  469 bits (1207), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 228/313 (72%), Positives = 273/313 (87%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           S +RP+TL++FTGQ +A  NLKVFI AAKAR EALDHVLFVGPPGLGKTTLAQ++ARELG
Sbjct: 20  SGMRPQTLDDFTGQAQARENLKVFIGAAKARNEALDHVLFVGPPGLGKTTLAQIMARELG 79

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
           VNFR+TSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL+  VEE+LYPAMED+QLDL++G
Sbjct: 80  VNFRATSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLNPAVEEVLYPAMEDYQLDLIIG 139

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199
           EGP+ARSVKI+L++FTL+AATTR+GLLT PL+DRFGIP+RL FY  ++L+ IV+RGA+L 
Sbjct: 140 EGPAARSVKIDLAKFTLVAATTRIGLLTTPLRDRFGIPVRLEFYTPQELELIVKRGARLL 199

Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259
           G+ ++D+ A EIA RSRGTPRIAGRLLRRVRDFA VA    I   +AD AL +L +D  G
Sbjct: 200 GIGMSDDGATEIAKRSRGTPRIAGRLLRRVRDFAIVAGDADIDAGLADRALRQLEVDSAG 259

Query: 260 FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLL 319
           FD LD RYL  IA NFGGGPVGIETI+A LSEPRDAIE+++EPY+IQ G++QRTPRGR+L
Sbjct: 260 FDSLDRRYLKQIAMNFGGGPVGIETIAAALSEPRDAIEEIVEPYLIQNGYLQRTPRGRIL 319

Query: 320 MPIAWQHLGIDIP 332
            PIA++HLG+ +P
Sbjct: 320 TPIAFKHLGLAVP 332


>gi|304393329|ref|ZP_07375257.1| holliday junction DNA helicase RuvB [Ahrensia sp. R2A130]
 gi|303294336|gb|EFL88708.1| holliday junction DNA helicase RuvB [Ahrensia sp. R2A130]
          Length = 350

 Score =  469 bits (1206), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 232/318 (72%), Positives = 272/318 (85%), Gaps = 1/318 (0%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           ED D S+ RP  L +FTGQ +A +NL VFIEAAK R EALDHVLFVGPPGLGKTTLAQ++
Sbjct: 17  EDHDASI-RPDRLSDFTGQEQARANLSVFIEAAKQRGEALDHVLFVGPPGLGKTTLAQIM 75

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A+ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL+  VEEILYPAMED+QL
Sbjct: 76  AKELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLNPAVEEILYPAMEDYQL 135

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           DL++GEGP+ARSVKI+L++FTL+AATTR+GLLT PL+DRFGIPIRL FY + +L+ IV+R
Sbjct: 136 DLIIGEGPAARSVKIDLAKFTLVAATTRLGLLTTPLRDRFGIPIRLQFYTVPELELIVRR 195

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
           GA++ G+ + D  A EIA R+RGTPRIAGRLLRRVRDFA VA    ITR IAD AL +L 
Sbjct: 196 GARIFGIGIEDAGALEIAKRARGTPRIAGRLLRRVRDFAIVAGGDKITRTIADNALNQLG 255

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D  G D+LD RYL +I  NFGGGPVGIETI+A LSEPRDAIED+IEPY+IQQGFIQRTP
Sbjct: 256 VDPSGLDELDRRYLDVIGMNFGGGPVGIETIAASLSEPRDAIEDIIEPYLIQQGFIQRTP 315

Query: 315 RGRLLMPIAWQHLGIDIP 332
           RGR++ P A+ H+G+ +P
Sbjct: 316 RGRMMTPRAFDHMGLAVP 333


>gi|323138238|ref|ZP_08073310.1| Holliday junction DNA helicase RuvB [Methylocystis sp. ATCC 49242]
 gi|322396490|gb|EFX99019.1| Holliday junction DNA helicase RuvB [Methylocystis sp. ATCC 49242]
          Length = 346

 Score =  468 bits (1205), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 236/328 (71%), Positives = 275/328 (83%), Gaps = 1/328 (0%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L+S     +D D S  RP TL +FTGQ  A +NLKVFIEAAK R +ALDHVL VGPPGLG
Sbjct: 8   LVSPEQRDDDTDTSF-RPLTLADFTGQEAARANLKVFIEAAKTRGDALDHVLLVGPPGLG 66

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTTLAQ+VARELGVNFRSTSGPVIAKAGDLAA LTNLE RDVLFIDEIHRL+  VEEILY
Sbjct: 67  KTTLAQIVARELGVNFRSTSGPVIAKAGDLAAQLTNLEPRDVLFIDEIHRLNPAVEEILY 126

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           PAMEDFQLDL++GEGP+ARSVKI+L++FTL+ ATTR GLLT PL+DRFGIP+RLNFY  E
Sbjct: 127 PAMEDFQLDLIIGEGPAARSVKIDLAKFTLVGATTRAGLLTTPLRDRFGIPVRLNFYTAE 186

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +L+ IV+RGA++ G+ + +E A EIA RSRGTPRIAGRLLRRVRDFA V  A TITR++A
Sbjct: 187 ELELIVRRGARVLGVGMNEEGAREIARRSRGTPRIAGRLLRRVRDFAIVEGAATITRQLA 246

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           D +L  L +D +G D +D RYL M+A NFGGGPVGIETI+A LSEPRDAIED+IEPY++Q
Sbjct: 247 DRSLSLLEVDSIGLDIMDRRYLNMVALNFGGGPVGIETIAAALSEPRDAIEDIIEPYLLQ 306

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           QGF+QRTPRGRLL P A++HLG+  P R
Sbjct: 307 QGFLQRTPRGRLLTPHAFKHLGLAEPAR 334


>gi|86751372|ref|YP_487868.1| Holliday junction DNA helicase RuvB [Rhodopseudomonas palustris
           HaA2]
 gi|123098275|sp|Q2IS53|RUVB_RHOP2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|86574400|gb|ABD08957.1| Holliday junction DNA helicase subunit RuvB [Rhodopseudomonas
           palustris HaA2]
          Length = 348

 Score =  467 bits (1201), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 231/334 (69%), Positives = 276/334 (82%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D   L++     +D   + LRP+ L EF GQ +A +NL+VFI+AA+ R EALDHVLFV
Sbjct: 1   MTDPSRLVTPERRGDDLGDAALRPQNLSEFVGQEKARANLQVFIDAARKRKEALDHVLFV 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ+VARELGV FR+TSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRLS  
Sbjct: 61  GPPGLGKTTLAQIVARELGVGFRATSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSPA 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDFQLDL++GEGP+ARSVKI LS+FTL+ ATTR GLLTNPL+DRFGIP+RL
Sbjct: 121 VEEVLYPAMEDFQLDLIIGEGPAARSVKIELSKFTLVGATTRAGLLTNPLRDRFGIPVRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           NFY IE+L++IV RGA++ G  +T + A EIA R+RGTPRIAGRLLRRVRDFA  A A+ 
Sbjct: 181 NFYTIEELESIVSRGARVLGTGITADGANEIARRARGTPRIAGRLLRRVRDFASAADAEA 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I R+IAD AL  L +D  G D +D RYL+ IA N+GGGPVG+ET++A LSEPRDAIED+I
Sbjct: 241 IDRKIADHALGALEVDAAGLDAMDRRYLSTIALNYGGGPVGVETMAAALSEPRDAIEDII 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           EPY+IQ G++QRTPRGRLL P A++HLG+  P R
Sbjct: 301 EPYLIQCGYLQRTPRGRLLTPHAFKHLGLAEPSR 334


>gi|307944540|ref|ZP_07659880.1| holliday junction DNA helicase RuvB [Roseibium sp. TrichSKD4]
 gi|307772289|gb|EFO31510.1| holliday junction DNA helicase RuvB [Roseibium sp. TrichSKD4]
          Length = 346

 Score =  467 bits (1201), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 226/334 (67%), Positives = 280/334 (83%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D + L++  +  ++ D S +RP+ L+ F GQ +A +NLK+FIEAAKAR EALDHVLFV
Sbjct: 1   MSDDQRLVTPEIRGDEID-STMRPQALDNFVGQAQARANLKIFIEAAKARGEALDHVLFV 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++ARELGVNFR+TSGPVIAK+GDLAALLTNLE+RDVLFIDEIHRL+  
Sbjct: 60  GPPGLGKTTLAQIMARELGVNFRATSGPVIAKSGDLAALLTNLEERDVLFIDEIHRLNPA 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMED+QLDL++GEGP+ARSVKI+L++FTL+AATTR+GLLT PL+DRFGIP+RL
Sbjct: 120 VEEVLYPAMEDYQLDLIIGEGPAARSVKIDLAKFTLVAATTRLGLLTTPLRDRFGIPVRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY   +L+ IV+RGA++ G+ + D+ A EIA RSRGTPRIAGRLLRRVRDFA V    +
Sbjct: 180 EFYTQPELEHIVKRGARIVGVGMADDGATEIAKRSRGTPRIAGRLLRRVRDFAIVEGVDS 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           + R +AD AL +L +D  G D LD RYL  IARNFGGGPVGIETI+A LSEPRDAIE+++
Sbjct: 240 VDRALADKALSQLEVDAAGLDSLDRRYLNQIARNFGGGPVGIETIAAALSEPRDAIEEIV 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           EPY+IQ GF+QRTPRGR+L  +A+ HLG+ +P R
Sbjct: 300 EPYLIQNGFLQRTPRGRVLTNVAFSHLGLAVPDR 333


>gi|254502080|ref|ZP_05114231.1| Holliday junction DNA helicase RuvB [Labrenzia alexandrii DFL-11]
 gi|222438151|gb|EEE44830.1| Holliday junction DNA helicase RuvB [Labrenzia alexandrii DFL-11]
          Length = 347

 Score =  466 bits (1198), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 226/334 (67%), Positives = 279/334 (83%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D + ++S  +  ++ D S +RP+ L++F GQ +A +NLKVFI AAKAR EALDHVLFV
Sbjct: 1   MSDDQRIVSPEIRGDEID-STMRPQALDDFVGQAQARANLKVFIGAAKARGEALDHVLFV 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++ARELGVNFR+TSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRL+  
Sbjct: 60  GPPGLGKTTLAQIMARELGVNFRATSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLNPA 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMED+QLDL++GEGP+ARSVKI+L++FTL+AATTR+GLLT PL+DRFGIP+RL
Sbjct: 120 VEEVLYPAMEDYQLDLIIGEGPAARSVKIDLAKFTLVAATTRLGLLTTPLRDRFGIPVRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY + +L+ IV+RGA + G+ + ++ A EIA RSRGTPRIAGRLLRRVRDFA    A+ 
Sbjct: 180 EFYTVPELEHIVKRGASILGIGIAEDGALEIAKRSRGTPRIAGRLLRRVRDFAVFEGAEK 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           + R +AD AL +L +D  G D LD RYL  IA NFGGGPVGIETI+A LSEPRDAIE+++
Sbjct: 240 VDRALADKALRQLEVDGAGLDSLDRRYLNQIAVNFGGGPVGIETIAAALSEPRDAIEEIV 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           EPY+IQ GF+QRTPRGR+L P A+ HLG+ +P R
Sbjct: 300 EPYLIQNGFLQRTPRGRILTPTAFSHLGLAVPSR 333


>gi|192289702|ref|YP_001990307.1| Holliday junction DNA helicase RuvB [Rhodopseudomonas palustris
           TIE-1]
 gi|238692593|sp|B3QHS4|RUVB_RHOPT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|192283451|gb|ACE99831.1| Holliday junction DNA helicase RuvB [Rhodopseudomonas palustris
           TIE-1]
          Length = 349

 Score =  465 bits (1197), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 232/334 (69%), Positives = 275/334 (82%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D   L++     +D   + LRP+ L EF GQ +A +NL+VFI+AA+ R EALDHVLFV
Sbjct: 1   MTDPSRLVTPERRGDDLGDAALRPQNLSEFVGQQQARANLQVFIDAARKRKEALDHVLFV 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ+VARELGV FR+TSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRLS  
Sbjct: 61  GPPGLGKTTLAQIVARELGVGFRATSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSPS 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDFQLDL++GEGP+ARSVKI+LS+FTL+ ATTR GLLTNPL+DRFGIPIRL
Sbjct: 121 VEEVLYPAMEDFQLDLIIGEGPAARSVKIDLSKFTLVGATTRAGLLTNPLRDRFGIPIRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           NFY IE+L++IV RGA++ G  +T + A EIA R+RGTPRIAGRLLRRVRDFA  A A+ 
Sbjct: 181 NFYTIEELESIVTRGARVLGTPITADGANEIARRARGTPRIAGRLLRRVRDFASAADAEA 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I R IAD AL  L +D  G D +D RYLT IA N+GGGPVG+ET++A LSEPRDAIED+I
Sbjct: 241 IDRSIADHALGALEVDSAGLDAMDRRYLTTIALNYGGGPVGVETMAAALSEPRDAIEDII 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           EPY+IQ G++QRTPRGRLL   A++HLG+  P R
Sbjct: 301 EPYLIQCGYLQRTPRGRLLTDHAFRHLGLAAPSR 334


>gi|121602504|ref|YP_988487.1| Holliday junction DNA helicase B [Bartonella bacilliformis KC583]
 gi|166231465|sp|A1UR84|RUVB_BARBK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|120614681|gb|ABM45282.1| Holliday junction DNA helicase RuvB [Bartonella bacilliformis
           KC583]
          Length = 369

 Score =  464 bits (1195), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 230/318 (72%), Positives = 272/318 (85%), Gaps = 1/318 (0%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           +D D SL RP+ L++F GQ  A +NLK+FIEAAK R EALDHVLFVGPPGLGKTTL+Q++
Sbjct: 17  DDPDRSL-RPQVLDDFIGQEAARANLKIFIEAAKTRHEALDHVLFVGPPGLGKTTLSQIM 75

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A+ELGVNFRSTSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRL+  +EEILYPAMED+QL
Sbjct: 76  AKELGVNFRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLNPAIEEILYPAMEDYQL 135

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           DL++GEGP+ARSVKI+L++FTL+AATTR+GLLT PL+DRFGIPIRLNFY IE+L+ IV+R
Sbjct: 136 DLIIGEGPAARSVKIDLAKFTLVAATTRLGLLTTPLRDRFGIPIRLNFYTIEELEYIVKR 195

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A+L  + ++D+ A EIA R+RGTPRIAGRLLRRV DFA V  AKTI REIAD AL RL 
Sbjct: 196 NARLFSVPISDDGAHEIARRARGTPRIAGRLLRRVCDFALVKQAKTIDREIADTALSRLE 255

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D +G D LD  YL +IA  F GGPVGIETI+A LSEPRDAIED+IEPY++QQGFIQRTP
Sbjct: 256 VDHLGLDPLDRNYLMLIADVFLGGPVGIETIAAALSEPRDAIEDIIEPYLLQQGFIQRTP 315

Query: 315 RGRLLMPIAWQHLGIDIP 332
           RGR++   AW HLG+  P
Sbjct: 316 RGRIITEKAWAHLGLRAP 333


>gi|39934177|ref|NP_946453.1| Holliday junction DNA helicase RuvB [Rhodopseudomonas palustris
           CGA009]
 gi|47606089|sp|P61536|RUVB_RHOPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|39648025|emb|CAE26545.1| RuvB; Holliday branch migration protein [Rhodopseudomonas palustris
           CGA009]
          Length = 349

 Score =  464 bits (1195), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 232/334 (69%), Positives = 275/334 (82%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D   L++     +D   + LRP+ L EF GQ +A +NL+VFI+AA+ R EALDHVLFV
Sbjct: 1   MTDPSRLVTPERRGDDLGDAALRPQNLSEFVGQQQARANLQVFIDAARKRKEALDHVLFV 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ+VARELGV FR+TSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRLS  
Sbjct: 61  GPPGLGKTTLAQIVARELGVGFRATSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSPS 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDFQLDL++GEGP+ARSVKI+LS+FTL+ ATTR GLLTNPL+DRFGIPIRL
Sbjct: 121 VEEVLYPAMEDFQLDLIIGEGPAARSVKIDLSKFTLVGATTRAGLLTNPLRDRFGIPIRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           NFY IE+L++IV RGA++ G  +T + A EIA R+RGTPRIAGRLLRRVRDFA  A A+ 
Sbjct: 181 NFYTIEELESIVTRGARVLGTPITADGANEIARRARGTPRIAGRLLRRVRDFASAADAEA 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I R IAD AL  L +D  G D +D RYLT IA N+GGGPVG+ET++A LSEPRDAIED+I
Sbjct: 241 IDRAIADHALGALEVDSAGLDAMDRRYLTTIALNYGGGPVGVETMAAALSEPRDAIEDII 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           EPY+IQ G++QRTPRGRLL   A++HLG+  P R
Sbjct: 301 EPYLIQCGYLQRTPRGRLLTDHAFRHLGLAAPSR 334


>gi|148258114|ref|YP_001242699.1| Holliday junction DNA helicase RuvB [Bradyrhizobium sp. BTAi1]
 gi|172047314|sp|A5ERJ9|RUVB_BRASB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|146410287|gb|ABQ38793.1| Holliday junction DNA helicase subunit RuvB [Bradyrhizobium sp.
           BTAi1]
          Length = 348

 Score =  464 bits (1194), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 228/328 (69%), Positives = 272/328 (82%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           ++S     +D   + LRP+ L EF GQ +A +NL +FIEAA+ R EALDHVLFVGPPGLG
Sbjct: 7   MVSPERRSDDVGDTALRPQQLSEFVGQQQARANLSIFIEAARKRGEALDHVLFVGPPGLG 66

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTTLAQ+VARELGV FR+TSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRLS  VEE+LY
Sbjct: 67  KTTLAQIVARELGVGFRATSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSPAVEEVLY 126

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           PAMEDFQLDL++GEGP+ARSVKI+L++FTL+ ATTR GLLTNPL+DRFGIPIRLNFY +E
Sbjct: 127 PAMEDFQLDLIIGEGPAARSVKIDLAKFTLVGATTRAGLLTNPLRDRFGIPIRLNFYTVE 186

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +L+ IV RGA++ G+ +T + A EIA R+RGTPRIAGRLLRRVRDFA  A+A  I R IA
Sbjct: 187 ELEGIVTRGARVLGVGMTADGANEIARRARGTPRIAGRLLRRVRDFASAANADAIDRAIA 246

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           D AL  L +D  G D +D RYLT IA N+GGGPVG+ET++A LSEPRDAIED+IEPY+IQ
Sbjct: 247 DHALSALEVDAAGLDAMDRRYLTTIALNYGGGPVGVETMAAALSEPRDAIEDIIEPYLIQ 306

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
            G++QRTPRGRLL   A++HLG+  P R
Sbjct: 307 CGYLQRTPRGRLLTSHAFRHLGMAEPSR 334


>gi|27376648|ref|NP_768177.1| Holliday junction DNA helicase RuvB [Bradyrhizobium japonicum USDA
           110]
 gi|44888479|sp|Q89U80|RUVB_BRAJA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|27349789|dbj|BAC46802.1| holliday junction DNA helicase [Bradyrhizobium japonicum USDA 110]
          Length = 351

 Score =  463 bits (1192), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 226/328 (68%), Positives = 273/328 (83%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           ++S     +D   + LRP++L +F GQ +A  NL +FIEAA+ R EALDHVLFVGPPGLG
Sbjct: 9   MVSPERRSDDVGDTALRPQSLSDFVGQQQARKNLSIFIEAARKRGEALDHVLFVGPPGLG 68

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTTLAQ+VA+ELGV FR+TSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRLS  VEE+LY
Sbjct: 69  KTTLAQIVAKELGVGFRATSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSPAVEEVLY 128

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           PAMEDFQLDL++GEGP+ARSVKI LS+FTL+ ATTR GLLTNPL+DRFGIP+RLNFY IE
Sbjct: 129 PAMEDFQLDLIIGEGPAARSVKIELSKFTLVGATTRAGLLTNPLRDRFGIPVRLNFYTIE 188

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +L++IV RGA++  + ++ + A EIA R+RGTPRIAGRLLRRVRDFA  A A TI R+IA
Sbjct: 189 ELESIVSRGARVLNVGMSADGANEIARRARGTPRIAGRLLRRVRDFASAADADTIDRKIA 248

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           D AL  L +D  G D +D RYLT IA N+GGGPVG+ET++A LSEPRDAIED+IEPY+IQ
Sbjct: 249 DHALSALEVDAAGLDAMDRRYLTTIAMNYGGGPVGVETMAAALSEPRDAIEDIIEPYLIQ 308

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
            G++QRTPRGRLL   A++HLG+  P+R
Sbjct: 309 CGYLQRTPRGRLLTSHAFRHLGLAEPNR 336


>gi|240851224|ref|YP_002972627.1| Holliday junction DNA helicase RuvB [Bartonella grahamii as4aup]
 gi|240268347|gb|ACS51935.1| Holliday junction DNA helicase RuvB [Bartonella grahamii as4aup]
          Length = 364

 Score =  462 bits (1190), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 225/311 (72%), Positives = 267/311 (85%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L++F GQ  A +NLK+FIEAAK R EALDHVLFVGPPGLGKTTL+Q++A+ELGVN
Sbjct: 23  LRPQVLDDFIGQEAARANLKIFIEAAKTRQEALDHVLFVGPPGLGKTTLSQIMAKELGVN 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           FRSTSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRL+  +EEILYPAMED+QLDL++GEG
Sbjct: 83  FRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLNPAIEEILYPAMEDYQLDLIIGEG 142

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARSVKI+L++FTL+AATTR+GLLT PL+DRFGIPIRLNFY IE+L+ IVQR A+L  +
Sbjct: 143 PAARSVKIDLAKFTLVAATTRLGLLTTPLRDRFGIPIRLNFYTIEELEYIVQRNARLFAV 202

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            ++D+ A EIA R+RGTPRIAGRLLRRV DFA V  AK I ++IAD AL RL +D +G D
Sbjct: 203 KISDDGAHEIARRARGTPRIAGRLLRRVCDFALVKQAKQIDQKIADEALSRLEVDHLGLD 262

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            LD RYL +IA  F GGPVGIETI+A LSEPRDAIED++EPY++QQGFIQRT RGR+L  
Sbjct: 263 PLDRRYLLLIAETFLGGPVGIETIAAALSEPRDAIEDIVEPYLLQQGFIQRTARGRILTE 322

Query: 322 IAWQHLGIDIP 332
            AW HLG+  P
Sbjct: 323 KAWSHLGLSAP 333


>gi|49476146|ref|YP_034187.1| Holliday junction DNA helicase B [Bartonella henselae str.
           Houston-1]
 gi|68715467|sp|Q6G5R1|RUVB_BARHE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|49238954|emb|CAF28252.1| Holliday junction DNA helicase ruvB [Bartonella henselae str.
           Houston-1]
          Length = 361

 Score =  462 bits (1190), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 228/311 (73%), Positives = 269/311 (86%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L++F GQ  A +NLK+FIEAAKAR EALDHVLFVGPPGLGKTTL+Q++A+ELGVN
Sbjct: 23  LRPQVLDDFIGQEAARANLKIFIEAAKARQEALDHVLFVGPPGLGKTTLSQIMAKELGVN 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           FRSTSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRLS  +EEILYPAMED+QLDL++GEG
Sbjct: 83  FRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSPAIEEILYPAMEDYQLDLIIGEG 142

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARSVKI+L++FTL+AATTR+GLLT PL+DRFGIPIRLNFY IE+L+ IVQR A+L  +
Sbjct: 143 PAARSVKIDLAKFTLVAATTRLGLLTTPLRDRFGIPIRLNFYTIEELEYIVQRNARLFSV 202

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            ++++ A EIA R+RGTPRIAGRLLRRV DFA V  AK I R+IAD AL RL +D +G D
Sbjct: 203 QISEDGAHEIARRARGTPRIAGRLLRRVCDFALVKRAKKIDRKIADEALSRLEVDHLGLD 262

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            LD RYL +IA+ F GGPVGIETI+A LSEPRDAIED+IEPY++QQGFIQRT RGR+L  
Sbjct: 263 PLDRRYLLLIAQTFLGGPVGIETIAAALSEPRDAIEDIIEPYLLQQGFIQRTARGRILHQ 322

Query: 322 IAWQHLGIDIP 332
            AW HLG+  P
Sbjct: 323 KAWSHLGLCAP 333


>gi|163869136|ref|YP_001610375.1| Holliday junction DNA helicase RuvB [Bartonella tribocorum CIP
           105476]
 gi|189045781|sp|A9IYK5|RUVB_BART1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|161018822|emb|CAK02380.1| Holliday junction DNA helicase RuvB [Bartonella tribocorum CIP
           105476]
          Length = 363

 Score =  462 bits (1190), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 226/311 (72%), Positives = 267/311 (85%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L++F GQ  A +NLK+FIEAAK R EALDHVLFVGPPGLGKTTL+Q++A+ELGVN
Sbjct: 23  LRPQVLDDFIGQEAARANLKIFIEAAKTRQEALDHVLFVGPPGLGKTTLSQIMAKELGVN 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           FRSTSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRL+  +EEILYPAMED+QLDL++GEG
Sbjct: 83  FRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLNPAIEEILYPAMEDYQLDLIIGEG 142

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARSVKI+L++FTL+AATTR+GLLT PL+DRFGIPIRLNFY IE+L+ IVQR A+L  +
Sbjct: 143 PAARSVKIDLAKFTLVAATTRLGLLTTPLRDRFGIPIRLNFYTIEELEYIVQRNARLFAV 202

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            ++D+ A EIA R+RGTPRIAGRLLRRV DFA V  AK I R+IAD AL RL +D +G D
Sbjct: 203 KISDDGAHEIARRARGTPRIAGRLLRRVCDFALVKQAKQIDRKIADEALSRLEVDHLGLD 262

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            LD RYL +IA  F GGPVGIETI+A LSEPRDAIED++EPY++QQGFIQRT RGR+L  
Sbjct: 263 PLDRRYLLLIAETFLGGPVGIETIAAALSEPRDAIEDIVEPYLLQQGFIQRTARGRILTE 322

Query: 322 IAWQHLGIDIP 332
            AW HLG+  P
Sbjct: 323 KAWSHLGLAAP 333


>gi|316932644|ref|YP_004107626.1| Holliday junction DNA helicase RuvB [Rhodopseudomonas palustris
           DX-1]
 gi|315600358|gb|ADU42893.1| Holliday junction DNA helicase RuvB [Rhodopseudomonas palustris
           DX-1]
          Length = 348

 Score =  462 bits (1190), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 229/334 (68%), Positives = 277/334 (82%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D   L++     +D   + LRP+ L EF GQ +A +NL+VFI+AA+ R EALDHVLFV
Sbjct: 1   MTDPSRLVTPERRGDDLGDAALRPQNLSEFVGQQQARANLQVFIDAARKRKEALDHVLFV 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ+VARELGV FR+TSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRLS  
Sbjct: 61  GPPGLGKTTLAQIVARELGVGFRATSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSPS 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDFQLDL++GEGP+ARSVKI+LS+FTL+ ATTR GLLTNPL+DRFGIP+RL
Sbjct: 121 VEEVLYPAMEDFQLDLIIGEGPAARSVKIDLSKFTLVGATTRAGLLTNPLRDRFGIPVRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           NFY I++L++IV+RGA++ G  +T++ A EIA R+RGTPRIAGRLLRRVRDFA  A A+ 
Sbjct: 181 NFYTIDELESIVRRGARVLGTPITNDGANEIARRARGTPRIAGRLLRRVRDFASHADAEA 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I R IAD AL  L +D  G D +D RYL+ IA N+GGGPVG+ET++A LSEPRDAIED+I
Sbjct: 241 IDRAIADHALQALEVDSAGLDAMDRRYLSTIALNYGGGPVGVETMAAALSEPRDAIEDII 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           EPY+IQ G++QRTPRGRLL   A++HLG+  P R
Sbjct: 301 EPYLIQCGYLQRTPRGRLLTDHAFRHLGLAAPSR 334


>gi|240141624|ref|YP_002966104.1| Holliday junction ATP-dependent DNA helicase [Methylobacterium
           extorquens AM1]
 gi|240011601|gb|ACS42827.1| Holliday junction ATP-dependent DNA helicase [Methylobacterium
           extorquens AM1]
          Length = 356

 Score =  462 bits (1189), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 231/328 (70%), Positives = 276/328 (84%), Gaps = 1/328 (0%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           LLS     +DAD S+ RP +L EF GQ  A +N+++FIE+AK   +ALDHVLFVGPPGLG
Sbjct: 13  LLSPERRPDDADQSI-RPLSLSEFIGQRAARANMQIFIESAKKTGQALDHVLFVGPPGLG 71

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTTLAQ+VARELGVNFRSTSGPVIAKAGDLAA LTNLE+RDVLFIDEIHRL+  VEEILY
Sbjct: 72  KTTLAQIVARELGVNFRSTSGPVIAKAGDLAAQLTNLEERDVLFIDEIHRLNPAVEEILY 131

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           PAMED+QLDL++GEGP+ARSVKI L +FTL+ ATTR GLLT PL+DRFGIPIRL FYEI+
Sbjct: 132 PAMEDYQLDLIIGEGPAARSVKIELPKFTLVGATTRAGLLTTPLRDRFGIPIRLEFYEID 191

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +L+ IV+RGA++ GL +++E A EIA R+RGTPRIAGRLLRRVRDFA V  A T+TR IA
Sbjct: 192 ELELIVRRGARVLGLGMSEEGANEIAKRARGTPRIAGRLLRRVRDFAIVEDATTVTRAIA 251

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           D AL  L +D +G D +D +YLT+IA +FGGGPVGIETI+A LSEPRDAIED+IEPY+IQ
Sbjct: 252 DRALQMLDVDPVGLDVMDRKYLTLIAASFGGGPVGIETIAAALSEPRDAIEDIIEPYLIQ 311

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           +GF+QRTPRGR+L P A++H+G   P R
Sbjct: 312 KGFVQRTPRGRVLTPHAFRHMGFAEPRR 339


>gi|163854164|ref|YP_001642207.1| Holliday junction DNA helicase B [Methylobacterium extorquens PA1]
 gi|218533109|ref|YP_002423925.1| Holliday junction DNA helicase RuvB [Methylobacterium
           chloromethanicum CM4]
 gi|254564131|ref|YP_003071226.1| Holliday junction ATP-dependent DNA helicase [Methylobacterium
           extorquens DM4]
 gi|163665769|gb|ABY33136.1| Holliday junction DNA helicase RuvB [Methylobacterium extorquens
           PA1]
 gi|218525412|gb|ACK85997.1| Holliday junction DNA helicase RuvB [Methylobacterium
           chloromethanicum CM4]
 gi|254271409|emb|CAX27422.1| Holliday junction ATP-dependent DNA helicase [Methylobacterium
           extorquens DM4]
          Length = 356

 Score =  462 bits (1189), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 231/328 (70%), Positives = 276/328 (84%), Gaps = 1/328 (0%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           LLS     +DAD S+ RP +L EF GQ  A +N+++FIEAAK   +ALDHVLFVGPPGLG
Sbjct: 13  LLSPERRPDDADQSI-RPLSLSEFIGQRAARANMQIFIEAAKKTGQALDHVLFVGPPGLG 71

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTTLAQ+VARELGVNFRSTSGPVIAKAGDLAA LTNLE+RDVLFIDEIHRL+  VEEILY
Sbjct: 72  KTTLAQIVARELGVNFRSTSGPVIAKAGDLAAQLTNLEERDVLFIDEIHRLNPAVEEILY 131

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           PAMED+QLDL++GEGP+ARSVKI L +FTL+ ATTR GLLT PL+DRFGIPIRL FYEI+
Sbjct: 132 PAMEDYQLDLIIGEGPAARSVKIELPKFTLVGATTRAGLLTTPLRDRFGIPIRLEFYEID 191

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +L+ IV+RGA++ GL +++E A EIA R+RGTPRIAGRLLRRVRDFA V  A T++R IA
Sbjct: 192 ELELIVRRGARVLGLGMSEEGANEIAKRARGTPRIAGRLLRRVRDFAIVEDATTVSRAIA 251

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           D AL  L +D +G D +D +YLT+IA +FGGGPVGIETI+A LSEPRDAIED+IEPY+IQ
Sbjct: 252 DRALQMLDVDPVGLDVMDRKYLTLIAASFGGGPVGIETIAAALSEPRDAIEDIIEPYLIQ 311

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           +GF+QRTPRGR+L P A++H+G   P R
Sbjct: 312 KGFVQRTPRGRVLTPHAFRHMGFAEPRR 339


>gi|49474676|ref|YP_032718.1| Holliday junction DNA helicase B [Bartonella quintana str.
           Toulouse]
 gi|68715463|sp|Q6FYP6|RUVB_BARQU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|49240180|emb|CAF26646.1| Holliday junction DNA helicase ruvB [Bartonella quintana str.
           Toulouse]
          Length = 361

 Score =  462 bits (1188), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 226/311 (72%), Positives = 268/311 (86%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L++F GQ  A +NLK+FIEAAKAR EALDHVLFVGPPGLGKTTL+Q++A+ELGVN
Sbjct: 20  LRPQVLDDFIGQEAARANLKIFIEAAKARQEALDHVLFVGPPGLGKTTLSQIMAKELGVN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           FRSTSGPVIAK+GDLAALLTNLE+RDVLFIDEIHRL+  +EEILYPAMED+QLDL++GEG
Sbjct: 80  FRSTSGPVIAKSGDLAALLTNLEERDVLFIDEIHRLNPAIEEILYPAMEDYQLDLILGEG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARSVKI+L++FTL+AATTR+GLLT PL+DRFGIPIRLNFY IE+L+ IVQR A+L  +
Sbjct: 140 PAARSVKIDLAKFTLVAATTRLGLLTTPLRDRFGIPIRLNFYTIEELEYIVQRNARLFSV 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            ++D+ A EIA R+RGTPRIAGRLLRRV DFA V  AK I R++AD AL RL +D +G D
Sbjct: 200 QISDDGAHEIARRARGTPRIAGRLLRRVCDFALVKRAKKIDRKVADEALSRLEVDHLGLD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            LD RYL +IA  F GGPVGIETI+A LSEPRDAIED+IEPY++QQGFIQRT RGR+L  
Sbjct: 260 PLDRRYLLLIAETFLGGPVGIETIAAALSEPRDAIEDIIEPYLLQQGFIQRTARGRILRE 319

Query: 322 IAWQHLGIDIP 332
            AW HLG+  P
Sbjct: 320 KAWNHLGLCAP 330


>gi|188584493|ref|YP_001927938.1| Holliday junction DNA helicase RuvB [Methylobacterium populi BJ001]
 gi|179347991|gb|ACB83403.1| Holliday junction DNA helicase RuvB [Methylobacterium populi BJ001]
          Length = 388

 Score =  459 bits (1182), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 229/328 (69%), Positives = 276/328 (84%), Gaps = 1/328 (0%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           LL+     +D D S+ RP +L EF GQ  A +N+++FIEAAK   +ALDHVLFVGPPGLG
Sbjct: 45  LLNPERRADDVDQSI-RPLSLAEFIGQRAARANMQIFIEAAKKTGQALDHVLFVGPPGLG 103

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTTLAQ+VARELGVNFRSTSGPVIAKAGDLAA LTNLE+RDVLFIDEIHRL+  VEEILY
Sbjct: 104 KTTLAQIVARELGVNFRSTSGPVIAKAGDLAAQLTNLEERDVLFIDEIHRLNPAVEEILY 163

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           PAMED+QLDL++GEGP+ARSVKI L +FTL+ ATTR GLLT PL+DRFGIPIRL FYEI+
Sbjct: 164 PAMEDYQLDLIIGEGPAARSVKIELPKFTLVGATTRAGLLTTPLRDRFGIPIRLEFYEID 223

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +L+ IV+RGA++ GL +++E A EIA R+RGTPRIAGRLLRRVRDFA V  A+T++R IA
Sbjct: 224 ELELIVRRGARVLGLGMSEEGANEIAKRARGTPRIAGRLLRRVRDFAIVEDAQTVSRAIA 283

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           D AL  L +D +G D +D +YLT+IA +FGGGPVGIETI+A LSEPRDAIED+IEPY+IQ
Sbjct: 284 DRALQMLDVDPVGLDVMDRKYLTLIAASFGGGPVGIETIAAALSEPRDAIEDIIEPYLIQ 343

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           +GF+QRTPRGR+L P A++H+G   P R
Sbjct: 344 KGFVQRTPRGRVLTPHAFRHMGFAEPRR 371


>gi|217977801|ref|YP_002361948.1| Holliday junction DNA helicase RuvB [Methylocella silvestris BL2]
 gi|254767432|sp|B8EK46|RUVB_METSB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|217503177|gb|ACK50586.1| Holliday junction DNA helicase RuvB [Methylocella silvestris BL2]
          Length = 348

 Score =  459 bits (1182), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 232/328 (70%), Positives = 274/328 (83%), Gaps = 1/328 (0%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L++ +  ++DA++SL RP  L +FTGQ  A +NLKVFIEAAKAR EALDHVLF GPPGLG
Sbjct: 8   LIAPDAREDDAELSL-RPLALADFTGQASARANLKVFIEAAKARREALDHVLFWGPPGLG 66

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTTLAQ+VARELGVNFRSTSGPVIAKAGDLAA LT LEDRDVLFIDEIHRL+  VEEILY
Sbjct: 67  KTTLAQIVARELGVNFRSTSGPVIAKAGDLAAQLTGLEDRDVLFIDEIHRLNPAVEEILY 126

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           PAMEDFQLDL++GEGP ARSVKI+L++FTLI ATTR GLLT PL+DRFGIPIRL +Y +E
Sbjct: 127 PAMEDFQLDLIIGEGPGARSVKIDLAKFTLIGATTRAGLLTTPLRDRFGIPIRLEYYTVE 186

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +L+ IV+RGA++  + + DE A EIA R+RGTPRIAGRLLRRVRDFA V     ITR +A
Sbjct: 187 ELECIVRRGARVLSIPIADEGANEIARRARGTPRIAGRLLRRVRDFAAVDGDPEITRAVA 246

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           D AL  L +D +G DQ+D R+L  IA +FGGGPVG+ETI+A LSEPRDAIED+IEPY+IQ
Sbjct: 247 DRALRLLDVDHIGLDQMDRRFLQTIALSFGGGPVGVETIAAALSEPRDAIEDIIEPYLIQ 306

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           QGF+QRTPRGR+L   A++HLG+  P R
Sbjct: 307 QGFLQRTPRGRMLTSHAFRHLGLAEPPR 334


>gi|298293001|ref|YP_003694940.1| Holliday junction DNA helicase RuvB [Starkeya novella DSM 506]
 gi|296929512|gb|ADH90321.1| Holliday junction DNA helicase RuvB [Starkeya novella DSM 506]
          Length = 345

 Score =  459 bits (1182), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 225/331 (67%), Positives = 276/331 (83%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M+ + L++ +  +ED   + LRP+TL EF GQ +A +NL VFI+AAK R EALDHVLFVG
Sbjct: 1   MNTKRLVTPDKREEDLAEASLRPQTLAEFVGQEQARANLDVFIKAAKTRGEALDHVLFVG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLAQ+VARELGV FR+TSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRL+  V
Sbjct: 61  PPGLGKTTLAQIVARELGVGFRATSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLNPAV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILYPAMED++LDL++GEGP+ARSVKI LS+FTL+ ATTR GLLT PL+DRFGIPIRLN
Sbjct: 121 EEILYPAMEDYELDLIIGEGPAARSVKIQLSKFTLVGATTRSGLLTTPLRDRFGIPIRLN 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY +++L+ +V RGA++ G+ +  + A EIA R+RGTPRIAGRLLRRVRDFA VA    I
Sbjct: 181 FYTVDELELVVTRGARVLGIPIAKDGAREIARRARGTPRIAGRLLRRVRDFALVAGKDVI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
            R  AD AL  L +D  G DQ+D RYL++IA N+GGGPVG+ETI+A LSEPRDAIE++IE
Sbjct: 241 DRAAADHALGHLEVDGAGLDQMDRRYLSVIAMNYGGGPVGVETIAAALSEPRDAIEEIIE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           PY++QQGF+QRTPRGR+L   A++HLG+ +P
Sbjct: 301 PYLVQQGFLQRTPRGRMLTAHAFKHLGLAVP 331


>gi|319899377|ref|YP_004159474.1| Holliday junction DNA helicase RuvB [Bartonella clarridgeiae 73]
 gi|319403345|emb|CBI76904.1| Holliday junction DNA helicase RuvB [Bartonella clarridgeiae 73]
          Length = 364

 Score =  457 bits (1177), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 224/313 (71%), Positives = 267/313 (85%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+TL++F GQ  A +NLK+FIEAA+ R EALDHVLFVGPPGLGKTTL+Q++A+ELGVN
Sbjct: 23  LRPQTLDDFIGQEAARANLKIFIEAARTRHEALDHVLFVGPPGLGKTTLSQIMAKELGVN 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           FRSTSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRL+  +EEILYPAMED+QLDL++GEG
Sbjct: 83  FRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLNPAIEEILYPAMEDYQLDLIIGEG 142

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARSVKI+L++FTL+AATTR+GLLT PL+DRFGIPIRLNFY I++L+ IVQR A+L  +
Sbjct: 143 PAARSVKIDLAKFTLVAATTRLGLLTTPLRDRFGIPIRLNFYTIDELEHIVQRNARLFSV 202

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + D+ A EIA RSRGTPRI GRLLRRV DFA V  A+ I R +AD AL RL +D +G D
Sbjct: 203 QINDDGAHEIARRSRGTPRIVGRLLRRVCDFALVKKAEKIDRALADEALSRLEVDHLGLD 262

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            LD RYL +IA+ F GGPVGIETI+A LSEPRDAIED+IEPY++QQGFIQRT RGR+L  
Sbjct: 263 SLDRRYLILIAQTFLGGPVGIETIAAALSEPRDAIEDIIEPYLLQQGFIQRTARGRILTE 322

Query: 322 IAWQHLGIDIPHR 334
            AW HLG+  P +
Sbjct: 323 KAWTHLGLCSPTK 335


>gi|220920765|ref|YP_002496066.1| Holliday junction DNA helicase RuvB [Methylobacterium nodulans ORS
           2060]
 gi|219945371|gb|ACL55763.1| Holliday junction DNA helicase RuvB [Methylobacterium nodulans ORS
           2060]
          Length = 348

 Score =  457 bits (1177), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 228/334 (68%), Positives = 278/334 (83%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M     LL+    ++D D S+ RP +L +FTGQ  A +NL+VFIE+A+   +ALDHVLFV
Sbjct: 1   MSKPRALLTPERREDDIDASI-RPLSLADFTGQRAARANLQVFIESARKTGQALDHVLFV 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ+VARELGVNFRSTSGPVIAKAGDLAA LTNLE+RDVLFIDEIHRL+  
Sbjct: 60  GPPGLGKTTLAQIVARELGVNFRSTSGPVIAKAGDLAAQLTNLEERDVLFIDEIHRLNPA 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILYPAMED+QLDL++GEGP+ARSVKI L +FTL+AATTR GLLT PL+DRFGIPIRL
Sbjct: 120 VEEILYPAMEDYQLDLIIGEGPAARSVKIELPKFTLVAATTRAGLLTTPLRDRFGIPIRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FYEI++L+ IV RGA++ G+ +  + A EIA R+RGTPRIAGRLLRRVRDFA V  A T
Sbjct: 180 EFYEIDELEAIVARGARVLGIGMAPDGANEIAKRARGTPRIAGRLLRRVRDFAIVEDAPT 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +TR IAD AL  L +D +G D +D +YL +IAR+FGGGPVG+ET++A LSEPRDAIE++I
Sbjct: 240 VTRAIADKALRLLDVDPVGLDTMDRKYLGLIARSFGGGPVGVETMAAALSEPRDAIEEII 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           EPY+IQ+GF+QRTPRGR+L P A++HLG+  P+R
Sbjct: 300 EPYLIQKGFVQRTPRGRVLTPHAFRHLGLPEPNR 333


>gi|319404770|emb|CBI78371.1| Holliday junction DNA helicase RuvB [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 360

 Score =  457 bits (1176), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 226/311 (72%), Positives = 267/311 (85%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+TL++F GQ  A +NLK+FIEAA+ R EALDHVLFVGPPGLGKTTL+Q++A+ELGVN
Sbjct: 23  LRPQTLDDFIGQEAARANLKIFIEAARTRHEALDHVLFVGPPGLGKTTLSQIMAKELGVN 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           FRSTSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRL+  +EEILYPAMED+QLDL++GEG
Sbjct: 83  FRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLNPAIEEILYPAMEDYQLDLIIGEG 142

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARSVKI+L++FTL+AATTR+GLLT PL+DRFGIPIRLNFY IE+L+ IVQR A+L  +
Sbjct: 143 PAARSVKIDLAKFTLVAATTRLGLLTTPLRDRFGIPIRLNFYTIEELEYIVQRNARLFSV 202

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            ++D+ A EIA RSRGTPRIAGRLLRRV DFA V  A+ I   IADAAL RL +D +G D
Sbjct: 203 QISDDGAHEIARRSRGTPRIAGRLLRRVCDFALVKKAEKIDHTIADAALSRLEVDHLGLD 262

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            LD RYL +IA+ F GGPVGIETI+A LSEPRDAIED+IEPY++QQGFIQRT RGR+L  
Sbjct: 263 PLDRRYLILIAQTFLGGPVGIETIAAALSEPRDAIEDIIEPYLLQQGFIQRTARGRILTE 322

Query: 322 IAWQHLGIDIP 332
            AW HL +  P
Sbjct: 323 KAWTHLRLCPP 333


>gi|209886411|ref|YP_002290268.1| holliday junction DNA helicase RuvB [Oligotropha carboxidovorans
           OM5]
 gi|209874607|gb|ACI94403.1| holliday junction DNA helicase RuvB [Oligotropha carboxidovorans
           OM5]
          Length = 346

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 227/334 (67%), Positives = 274/334 (82%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D   + S   + +  D SL RP+ L EF GQ +A +NL VFIEAA+ R EALDHVLFV
Sbjct: 1   MTDSRLVTSERRADDIGDASL-RPQNLSEFVGQAQARANLSVFIEAARKRNEALDHVLFV 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ+V+RELGV FR+TSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRLS  
Sbjct: 60  GPPGLGKTTLAQIVSRELGVGFRATSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSPA 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDFQLDL++GEGP+ARSVKI+L++FTL+ ATTR GLLTNPL+DRFGIP+RL
Sbjct: 120 VEEVLYPAMEDFQLDLIIGEGPAARSVKIDLAKFTLVGATTRAGLLTNPLRDRFGIPLRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           NFY  ++L+ IV RGA++ G+ +T + A EIA R+RGTPRIAGRLLRRVRDFA    A+ 
Sbjct: 180 NFYTEDELEKIVTRGARVLGVGMTADGANEIARRARGTPRIAGRLLRRVRDFASALDAEA 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I R++AD AL  L +DK G D +D RYL+ IA N+GGGPVG+ET++A LSEPRDAIED+I
Sbjct: 240 IDRKVADHALGALEVDKAGLDAMDRRYLSTIALNYGGGPVGVETLAAALSEPRDAIEDII 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           EPY+IQ G++QRTPRGRLL   A++HLG+  P R
Sbjct: 300 EPYLIQCGYLQRTPRGRLLTSHAFKHLGLAEPSR 333


>gi|319407734|emb|CBI81381.1| Holliday junction DNA helicase RuvB [Bartonella sp. 1-1C]
          Length = 360

 Score =  456 bits (1174), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 231/330 (70%), Positives = 274/330 (83%), Gaps = 1/330 (0%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           D + LL       D D SL RP+TL++F GQ  A +NLK+FIEAA+ R EALDHVLFVGP
Sbjct: 5   DSQRLLGSIPLPNDPDRSL-RPQTLDDFIGQEAARANLKIFIEAARTRHEALDHVLFVGP 63

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTL+Q++A+ELGVNFRSTSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRL+  +E
Sbjct: 64  PGLGKTTLSQIMAKELGVNFRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLNPAIE 123

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILYPAMED+QLDL++GEGP+ARSVKI+L++FTL+AATTR+GLLT PL+DRFGIPIRLNF
Sbjct: 124 EILYPAMEDYQLDLIIGEGPAARSVKIDLAKFTLVAATTRLGLLTTPLRDRFGIPIRLNF 183

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y IE+L+ IVQR A+L  + ++D+ A EIA RSRGTPRIAGRLLRRV DFA V  A+ I 
Sbjct: 184 YTIEELEYIVQRNARLFSVQISDDGAHEIARRSRGTPRIAGRLLRRVCDFALVKKAEKID 243

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            +IAD AL RL +D +G D LD RYL +IA+ F GGPVGIETI+A LSEPRDAIED+IEP
Sbjct: 244 HKIADEALSRLEVDHLGLDPLDRRYLILIAQTFLGGPVGIETIAAALSEPRDAIEDIIEP 303

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           Y++QQGFIQRT RGR+L   AW HL +  P
Sbjct: 304 YLLQQGFIQRTARGRILTEKAWTHLRLCPP 333


>gi|170739411|ref|YP_001768066.1| Holliday junction DNA helicase RuvB [Methylobacterium sp. 4-46]
 gi|168193685|gb|ACA15632.1| Holliday junction DNA helicase RuvB [Methylobacterium sp. 4-46]
          Length = 348

 Score =  456 bits (1174), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 230/334 (68%), Positives = 275/334 (82%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M +   LL+    ++D D S+ RP +L +FTGQ  A +NL VFIEAA+   +ALDHVLFV
Sbjct: 1   MSNPRPLLTPERREDDIDASI-RPLSLSDFTGQRAARANLGVFIEAARRTGQALDHVLFV 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ+VARELGVNFRSTSGPVIAKAGDLAA LTNLE+RDVLFIDEIHRLS  
Sbjct: 60  GPPGLGKTTLAQIVARELGVNFRSTSGPVIAKAGDLAAQLTNLEERDVLFIDEIHRLSPA 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILYPAMED+QLDL++GEGP+ARSVKI L RFTL+AATTR GLLT PL+DRFGIPIRL
Sbjct: 120 VEEILYPAMEDYQLDLIIGEGPAARSVKIELPRFTLVAATTRAGLLTTPLRDRFGIPIRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY +++L+ IV RGA++ G+ +  + A EIA R+RGTPRIAGRLLRRVRDFA V  A T
Sbjct: 180 EFYAVDELEAIVARGARVLGIGMAADGANEIARRARGTPRIAGRLLRRVRDFAIVEEAGT 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +TR IAD AL  L +D  G D +D +YL +IAR++GGGPVG+ETI+A LSEPRDAIE++I
Sbjct: 240 VTRAIADRALRLLDVDAAGLDTMDRKYLGLIARSYGGGPVGVETIAAALSEPRDAIEEII 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           EPY++QQGF+QRTPRGRLL P A++HLG+  P R
Sbjct: 300 EPYLLQQGFVQRTPRGRLLTPHAFRHLGLPEPSR 333


>gi|170750825|ref|YP_001757085.1| Holliday junction DNA helicase RuvB [Methylobacterium radiotolerans
           JCM 2831]
 gi|170657347|gb|ACB26402.1| Holliday junction DNA helicase RuvB [Methylobacterium radiotolerans
           JCM 2831]
          Length = 344

 Score =  456 bits (1173), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 226/312 (72%), Positives = 265/312 (84%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP +L EF GQ  A +N++VFIEAAK   +ALDHVLFVGPPGLGKTTLAQ+VARELGVN
Sbjct: 27  IRPLSLSEFIGQRAARANMQVFIEAAKKTGQALDHVLFVGPPGLGKTTLAQIVARELGVN 86

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           FRSTSGPVIAKAGDLAA LTNLE+RDVLFIDEIHRL+  VEEILYPAMED+QLDL++GEG
Sbjct: 87  FRSTSGPVIAKAGDLAAQLTNLEERDVLFIDEIHRLNPAVEEILYPAMEDYQLDLIIGEG 146

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARSVKI L +FTL+ ATTR GLLT PL+DRFGIPIRL FYEI++L+ IV RGA++ GL
Sbjct: 147 PAARSVKIELPKFTLVGATTRAGLLTTPLRDRFGIPIRLEFYEIDELEQIVARGARVLGL 206

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            ++ E A EIA R+RGTPRIAGRLLRRVRDFA VA A+T+TR IAD AL  L +D  G D
Sbjct: 207 GMSAEGANEIARRARGTPRIAGRLLRRVRDFAVVAEAETVTRAIADRALQLLDVDGAGLD 266

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D +YL++IAR FGGGPVGIETI A LSEPRDAIED+IEPY+IQ+GF+QRTPRGR+L  
Sbjct: 267 VMDRKYLSLIARAFGGGPVGIETIGAALSEPRDAIEDIIEPYLIQRGFVQRTPRGRVLTR 326

Query: 322 IAWQHLGIDIPH 333
            A++HLG+  P 
Sbjct: 327 HAYRHLGLPEPE 338


>gi|158422143|ref|YP_001523435.1| Holliday junction DNA helicase RuvB [Azorhizobium caulinodans ORS
           571]
 gi|172048037|sp|A8IMA7|RUVB_AZOC5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|158329032|dbj|BAF86517.1| holliday junction DNA helicase [Azorhizobium caulinodans ORS 571]
          Length = 350

 Score =  456 bits (1173), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 221/328 (67%), Positives = 277/328 (84%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L++ +   ED   + LRP+ L +F GQ +A +NL+VFI+AA+AR EALDHVLFVGPPGLG
Sbjct: 11  LMTADSRPEDDADATLRPQRLADFVGQAQARANLEVFIQAARARGEALDHVLFVGPPGLG 70

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTTLAQ++ARE+GV FRSTSGPVIAKAGDLAA+LTNLE+RDVLFIDEIHRL+  VEEILY
Sbjct: 71  KTTLAQIMAREMGVGFRSTSGPVIAKAGDLAAILTNLEERDVLFIDEIHRLAPQVEEILY 130

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           PAMED++LDL++GEGP+ARSVKI+L +FTL+ ATTR GLLT PL+DRFGIP+RL FY +E
Sbjct: 131 PAMEDYELDLVIGEGPAARSVKISLPKFTLVGATTRSGLLTTPLRDRFGIPVRLVFYTLE 190

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +L+ IV RGA+L G+ +  E A EIA R+RGTPRIAGRLLRRVRDFA+ A A+ I R IA
Sbjct: 191 ELEYIVTRGARLLGIGIVPEGAREIARRARGTPRIAGRLLRRVRDFAQFAGAEAIDRAIA 250

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           D AL+ L +D MG D +D RYLT+IA+++GGGPVG+ET++A LSEPRDAIE+++EPY++Q
Sbjct: 251 DRALMALDVDAMGLDTMDRRYLTVIAQHYGGGPVGVETLAAALSEPRDAIEEIVEPYLVQ 310

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           QGF+QRTPRGR+L   A++HLG+  P R
Sbjct: 311 QGFVQRTPRGRMLTSGAFRHLGLAEPQR 338


>gi|319406257|emb|CBI79894.1| Holliday junction DNA helicase RuvB [Bartonella sp. AR 15-3]
          Length = 360

 Score =  456 bits (1173), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 225/311 (72%), Positives = 265/311 (85%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+TL++F GQ  A +NLK+FIEAA+ R EALDHVLFVGPPGLGKTTL+Q++A+ELGVN
Sbjct: 23  LRPQTLDDFIGQEAARANLKIFIEAARTRHEALDHVLFVGPPGLGKTTLSQIMAKELGVN 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           FRSTSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRL+  +EEILYPAMED+QLDL++GEG
Sbjct: 83  FRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLNPAIEEILYPAMEDYQLDLIIGEG 142

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARSVKI+L++FTL+AATTR+GLLT PL+DRFGIPIRLNFY IE+L+ IVQR A+L  +
Sbjct: 143 PAARSVKIDLAKFTLVAATTRLGLLTTPLRDRFGIPIRLNFYTIEELEYIVQRNARLFSV 202

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + D+ A EIA RSRGTPRIAGRLLRRV DFA V  A+ I   IAD AL RL +D +G D
Sbjct: 203 QINDDGAHEIARRSRGTPRIAGRLLRRVCDFALVKKAEKIDHTIADEALSRLEVDHLGLD 262

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            LD RYL +IA+ F GGPVGIETI+A LSEPRDAIED+IEPY++QQGFIQRT RGR+L  
Sbjct: 263 PLDRRYLILIAQTFLGGPVGIETIAAALSEPRDAIEDIIEPYLLQQGFIQRTARGRILTE 322

Query: 322 IAWQHLGIDIP 332
            AW HL +  P
Sbjct: 323 KAWTHLKLCPP 333


>gi|154246998|ref|YP_001417956.1| Holliday junction DNA helicase RuvB [Xanthobacter autotrophicus
           Py2]
 gi|154161083|gb|ABS68299.1| Holliday junction DNA helicase RuvB [Xanthobacter autotrophicus
           Py2]
          Length = 343

 Score =  456 bits (1172), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 222/326 (68%), Positives = 275/326 (84%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           LLS     EDA  S LRP+ L+EF GQ +A +NL+VFI+AA+AR EALDHVLFVGPPGLG
Sbjct: 5   LLSGEKRGEDAADSTLRPQLLKEFVGQAQARANLEVFIKAARARGEALDHVLFVGPPGLG 64

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTTLAQ+++RE+GV FRSTSGPVIAKAGDLAA+LTNLE+RDVLFIDEIHRL+  VEEILY
Sbjct: 65  KTTLAQIMSREMGVGFRSTSGPVIAKAGDLAAILTNLEERDVLFIDEIHRLAPAVEEILY 124

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           PAMED++LDL++GEGP+ARSVKI L +FTL+ ATTR GLLT PL+DRFGIP+RL FY +E
Sbjct: 125 PAMEDYELDLVIGEGPAARSVKIALPKFTLVGATTRSGLLTTPLRDRFGIPVRLQFYTVE 184

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +L+ IV RGA++ G+A+  + A EIA R+RGTPRIAGRLLRRVRDFA VA A+ I R++A
Sbjct: 185 ELEKIVVRGARVLGIAIAPDGATEIARRARGTPRIAGRLLRRVRDFALVAEAERIDRKVA 244

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           D ALL L +D  G D +D RYLT+IA  +GGGPVG++T++A LSEPRDAIE+++EP+++Q
Sbjct: 245 DRALLALEVDAAGLDAMDRRYLTVIADYYGGGPVGVDTLAAALSEPRDAIEEIVEPFLVQ 304

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIP 332
           QGFIQRTPRGR+L   A++HLG+  P
Sbjct: 305 QGFIQRTPRGRMLTATAFRHLGLPEP 330


>gi|170747185|ref|YP_001753445.1| Holliday junction DNA helicase RuvB [Methylobacterium radiotolerans
           JCM 2831]
 gi|170653707|gb|ACB22762.1| Holliday junction DNA helicase RuvB [Methylobacterium radiotolerans
           JCM 2831]
          Length = 351

 Score =  455 bits (1171), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 230/328 (70%), Positives = 271/328 (82%), Gaps = 1/328 (0%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           LL+     +D D   +RP +L EF GQ  A +N++VFIEAAK   +ALDHVLFVGPPGLG
Sbjct: 11  LLTPEKRTDDVD-QTIRPLSLSEFIGQRAARANMQVFIEAAKKTGQALDHVLFVGPPGLG 69

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTTLAQ+VARELGVNFRSTSGPVIAKAGDLAA LTNLE+RDVLFIDEIHRL+  VEEILY
Sbjct: 70  KTTLAQIVARELGVNFRSTSGPVIAKAGDLAAQLTNLEERDVLFIDEIHRLNPAVEEILY 129

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           PAMED+QLDL++GEGP+ARSVKI L +FTL+ ATTR GLLT PL+DRFGIPIRL FYEI+
Sbjct: 130 PAMEDYQLDLIIGEGPAARSVKIELPKFTLVGATTRAGLLTTPLRDRFGIPIRLEFYEID 189

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +L+ IV RGA++ GL ++ E A EIA R+RGTPRIAGRLLRRVRDFA VA A+T+TR IA
Sbjct: 190 ELEQIVARGARVLGLGMSAEGANEIARRARGTPRIAGRLLRRVRDFAVVAEAETVTRAIA 249

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           D AL  L +D  G D +D +YL++IAR FGGGPVGIETI A LSEPRDAIED+IEPY+IQ
Sbjct: 250 DRALQLLDVDGAGLDVMDRKYLSLIARAFGGGPVGIETIGAALSEPRDAIEDIIEPYLIQ 309

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           +GF+QRTPRGR+L   A++H+ I  P R
Sbjct: 310 RGFVQRTPRGRVLTRHAYRHMQIPEPTR 337


>gi|319409332|emb|CBI82976.1| Holliday junction DNA helicase RuvB [Bartonella schoenbuchensis R1]
          Length = 363

 Score =  454 bits (1168), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 224/312 (71%), Positives = 267/312 (85%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L++F GQ  A +NLK+FIEAAKAR EALDHVLFVGPPGLGKTTL+Q++A+ELGVN
Sbjct: 23  LRPQVLDDFIGQEAARANLKIFIEAAKARQEALDHVLFVGPPGLGKTTLSQIMAKELGVN 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           FRSTSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRL+  +EEILYPAMED+QLDL++GEG
Sbjct: 83  FRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLNPAIEEILYPAMEDYQLDLIIGEG 142

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARSVKI L++FTL+AATTR+GLLT PL+DRFGIPIRL+FY IE+L+ IV+R A+L  +
Sbjct: 143 PAARSVKIELAKFTLVAATTRLGLLTTPLRDRFGIPIRLSFYTIEELEYIVKRNARLFSV 202

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            ++D+ A EIA R+RGTPRIAGRLLRRV DFA V  A+ I R IAD AL RL +D +G D
Sbjct: 203 QISDDGAHEIACRARGTPRIAGRLLRRVCDFALVKGAEKIDRFIADEALSRLEVDHLGLD 262

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            LD RYL +IA+ F GGPVGIETI+A LSEPRDAIED+IEPY++QQGFIQRT RGR++  
Sbjct: 263 PLDRRYLILIAQTFLGGPVGIETIAAALSEPRDAIEDIIEPYLLQQGFIQRTARGRIITE 322

Query: 322 IAWQHLGIDIPH 333
            AW HLG+  P 
Sbjct: 323 KAWAHLGLCPPE 334


>gi|90426274|ref|YP_534644.1| Holliday junction DNA helicase RuvB [Rhodopseudomonas palustris
           BisB18]
 gi|123274758|sp|Q20X11|RUVB_RHOPB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|90108288|gb|ABD90325.1| Holliday junction DNA helicase subunit RuvB [Rhodopseudomonas
           palustris BisB18]
          Length = 349

 Score =  454 bits (1168), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 222/320 (69%), Positives = 266/320 (83%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           +D   + LRP+ L EF GQ +A +NL++FI+AA+ R EALDHVLFVGPPGLGKTTLAQ+V
Sbjct: 15  DDVGDTALRPQLLSEFVGQQQARANLQIFIDAARKRGEALDHVLFVGPPGLGKTTLAQIV 74

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           ARELGV FR+TSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRLS  VEE+LYPAMEDFQL
Sbjct: 75  ARELGVGFRATSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSPAVEEVLYPAMEDFQL 134

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           DL++GEGP+ARSVKI LS+FTL+ ATTR GLLTNPL+DRFGIP+RLNFY I +L++IV R
Sbjct: 135 DLIIGEGPAARSVKIELSKFTLVGATTRAGLLTNPLRDRFGIPVRLNFYTIAELESIVTR 194

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
           GA++  + +T + A EIA R+RGTPRIAGRLLRRVRDFA  A    I R IAD AL  L 
Sbjct: 195 GARVLSIGITPDGANEIARRARGTPRIAGRLLRRVRDFASAADKSAIDRGIADHALSALE 254

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D  G D +D RYL+ IA N+GGGPVG+ET++A LSEPRDAIED+IEP++IQ G++QRTP
Sbjct: 255 VDAAGLDAMDRRYLSTIAMNYGGGPVGVETMAAALSEPRDAIEDIIEPFLIQCGYLQRTP 314

Query: 315 RGRLLMPIAWQHLGIDIPHR 334
           RGRLL   A++HLG+  P R
Sbjct: 315 RGRLLTSHAFKHLGLAEPAR 334


>gi|170741944|ref|YP_001770599.1| Holliday junction DNA helicase RuvB [Methylobacterium sp. 4-46]
 gi|168196218|gb|ACA18165.1| Holliday junction DNA helicase RuvB [Methylobacterium sp. 4-46]
          Length = 359

 Score =  454 bits (1168), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 223/313 (71%), Positives = 266/313 (84%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP +L +FTGQ  A +NL VFIEAA+   +ALDHVLFVGPPGLGKTTLAQ+VARELGVN
Sbjct: 36  IRPLSLSDFTGQRAARANLGVFIEAARRTGQALDHVLFVGPPGLGKTTLAQIVARELGVN 95

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           FRSTSGPVIAKAGDLAA LTNLE+RDVLFIDEIHRL+  VEEILYPAMED+QLDL++GEG
Sbjct: 96  FRSTSGPVIAKAGDLAAQLTNLEERDVLFIDEIHRLNPAVEEILYPAMEDYQLDLIIGEG 155

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARSVKI L RFTL+AATTR GLLT PL+DRFGIPIRL FY +++L+ IV RGA++ G+
Sbjct: 156 PAARSVKIELPRFTLVAATTRAGLLTTPLRDRFGIPIRLEFYAVDELEAIVARGARVLGI 215

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  + A EIA R+RGTPRIAGRLLRRVRDFA V  A T+TR IAD AL  L +D  G D
Sbjct: 216 GMAADGANEIARRARGTPRIAGRLLRRVRDFAIVEEAGTVTRAIADRALRLLDVDAAGLD 275

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D +YL +IAR++GGGPVG+ETI+A LSEPRDAIE++IEPY++QQGF+QRTPRGRLL P
Sbjct: 276 TMDRKYLGLIARSYGGGPVGVETIAAALSEPRDAIEEIIEPYLLQQGFVQRTPRGRLLTP 335

Query: 322 IAWQHLGIDIPHR 334
            A++HLG+ +P R
Sbjct: 336 HAFRHLGLPVPVR 348


>gi|146338243|ref|YP_001203291.1| Holliday junction DNA helicase RuvB [Bradyrhizobium sp. ORS278]
 gi|172046978|sp|A4YMC8|RUVB_BRASO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|146191049|emb|CAL75054.1| Holliday junction DNA helicase ruvB [Bradyrhizobium sp. ORS278]
          Length = 348

 Score =  452 bits (1162), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 227/326 (69%), Positives = 270/326 (82%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           ++S     +D   + LRP+ L EF GQ +A +NL +FIEAA+ R EALDHVLFVGPPGLG
Sbjct: 7   MVSPERRSDDVGDTALRPQQLSEFVGQQQARANLSIFIEAARKRGEALDHVLFVGPPGLG 66

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTTLAQ+VARELGV FR+TSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRLS  VEE+LY
Sbjct: 67  KTTLAQIVARELGVGFRATSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSPAVEEVLY 126

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           PAMEDFQLDL++GEGP+ARSVKI+LS+FTL+ ATTR GLLTNPL+DRFGIPIRLNFY +E
Sbjct: 127 PAMEDFQLDLIIGEGPAARSVKIDLSKFTLVGATTRAGLLTNPLRDRFGIPIRLNFYTVE 186

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +L+ IV RGA++ G+ +T + A EIA R+RGTPRIAGRLLRRVRDFA  A A  I R IA
Sbjct: 187 ELEGIVTRGARVLGIGMTPDGANEIARRARGTPRIAGRLLRRVRDFASAADASAIDRAIA 246

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           D AL  L +D  G D +D RYL+ IA N+GGGPVG+ET++A LSEPRDAIED+IEPY+IQ
Sbjct: 247 DHALSALEVDAAGLDAMDRRYLSTIALNYGGGPVGVETMAAALSEPRDAIEDIIEPYLIQ 306

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIP 332
            G++QRTPRGRLL   A++HLG+  P
Sbjct: 307 CGYLQRTPRGRLLTSHAFKHLGMAEP 332


>gi|154252564|ref|YP_001413388.1| Holliday junction DNA helicase RuvB [Parvibaculum lavamentivorans
           DS-1]
 gi|171769604|sp|A7HUZ8|RUVB_PARL1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|154156514|gb|ABS63731.1| Holliday junction DNA helicase RuvB [Parvibaculum lavamentivorans
           DS-1]
          Length = 352

 Score =  449 bits (1154), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 222/319 (69%), Positives = 262/319 (82%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           +ED     LRP+ L +F GQ  A  NL VFIEAA+ RAEALDHVLF GPPGLGKTTLAQ+
Sbjct: 12  EEDELERSLRPQVLSDFVGQARARENLAVFIEAARTRAEALDHVLFAGPPGLGKTTLAQI 71

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           VARELGVNFR+TSGPVI+KAGDLAALLTNLE RDVLFIDEIHRLS  VEEILYPAMEDFQ
Sbjct: 72  VARELGVNFRATSGPVISKAGDLAALLTNLEPRDVLFIDEIHRLSPAVEEILYPAMEDFQ 131

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           LDL++GEGP ARSV+I L+ FTLI ATTR GLLT PL+DRFGIP+RL+FYE+ +L+ IV+
Sbjct: 132 LDLIIGEGPGARSVRIELAPFTLIGATTRTGLLTTPLRDRFGIPVRLHFYEVAELEGIVR 191

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           RGA + G+A+T + A EIA R+RGTPR+AGRLLRRVRDFA V   K+I  + AD AL RL
Sbjct: 192 RGASVLGVAMTPDGAHEIARRARGTPRVAGRLLRRVRDFASVEGVKSIDAKAADKALQRL 251

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D++G D LD RYL  IA +F GGPVG+ETI+A LSEPRDAIE++IEPY+IQQG + RT
Sbjct: 252 EVDELGLDALDHRYLRCIAVSFSGGPVGVETIAASLSEPRDAIEEIIEPYLIQQGLVNRT 311

Query: 314 PRGRLLMPIAWQHLGIDIP 332
           PRGR L P A+ H+G+ +P
Sbjct: 312 PRGRTLTPAAFAHIGVALP 330


>gi|296445133|ref|ZP_06887093.1| Holliday junction DNA helicase RuvB [Methylosinus trichosporium
           OB3b]
 gi|296257307|gb|EFH04374.1| Holliday junction DNA helicase RuvB [Methylosinus trichosporium
           OB3b]
          Length = 349

 Score =  449 bits (1154), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 234/328 (71%), Positives = 277/328 (84%), Gaps = 2/328 (0%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L++     +D D SL RP +L +FTGQ  A  NLK+FIEAAK R EALDHVLFVGPPGLG
Sbjct: 8   LVTPEQRDDDPDASL-RPLSLGDFTGQEAARKNLKIFIEAAKTRGEALDHVLFVGPPGLG 66

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTTLAQ+VARELGVNFRSTSGPVIAKAGDLAA LTNLE RDVLFIDEIHRL+  VEEILY
Sbjct: 67  KTTLAQIVARELGVNFRSTSGPVIAKAGDLAAQLTNLEPRDVLFIDEIHRLNPAVEEILY 126

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           PAMEDFQLDL++GEGP+ARSVKI+L++FTL+ ATTR GLLT PL+DRFGIP+RLNFY  E
Sbjct: 127 PAMEDFQLDLIIGEGPAARSVKIDLAKFTLVGATTRAGLLTTPLRDRFGIPVRLNFYTAE 186

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +L+ IV+RGA++ G+A+ ++ A EIA R+RGTPRIAGRLLRRVRDFA V +++ ITR +A
Sbjct: 187 ELELIVRRGARVLGVAMQEDGAREIARRARGTPRIAGRLLRRVRDFAIVENSE-ITRALA 245

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           D AL  L +D +G D +D RYL M+A NFGGGPVGIETI+A LSEPRDAIED+IEPY++Q
Sbjct: 246 DRALALLEVDSIGLDVMDRRYLEMVAVNFGGGPVGIETIAAALSEPRDAIEDIIEPYLLQ 305

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           QGF+QRTPRGRLL P A++HLG+  P R
Sbjct: 306 QGFLQRTPRGRLLTPHAFRHLGLAEPAR 333


>gi|312114823|ref|YP_004012419.1| Holliday junction DNA helicase RuvB [Rhodomicrobium vannielii ATCC
           17100]
 gi|311219952|gb|ADP71320.1| Holliday junction DNA helicase RuvB [Rhodomicrobium vannielii ATCC
           17100]
          Length = 347

 Score =  448 bits (1153), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 222/327 (67%), Positives = 268/327 (81%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           LL R    EDA    LRP+ L EF GQ +A +N+KVFI+AA+AR EALDHVLF GPPGLG
Sbjct: 5   LLDRERQDEDAGELSLRPQRLAEFIGQAQARANMKVFIDAARARGEALDHVLFAGPPGLG 64

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTTLAQ+VARELGVNF+ TSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL+  VEEILY
Sbjct: 65  KTTLAQIVARELGVNFKMTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLNPAVEEILY 124

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           PAMEDFQLDL++GEGP+ARSV+I+L++FTL+ ATTR GLLT PL+DRFGIPIRLNFY  +
Sbjct: 125 PAMEDFQLDLIIGEGPAARSVRIDLAKFTLVGATTRTGLLTTPLRDRFGIPIRLNFYTDD 184

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +L+ IV+RGA++  + +T + A E+A RSRGTPR+AGRLLRRVRDFA V     + R +A
Sbjct: 185 ELEEIVRRGARVLHMTMTADGAREVARRSRGTPRVAGRLLRRVRDFAAVGGVDEVDRAVA 244

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           DAAL +L +D +G D +D RYL  I  N+GGGPVGIETI+A LSE +DAIE++IEPY++Q
Sbjct: 245 DAALGKLEVDSLGLDAMDHRYLRCIGVNYGGGPVGIETIAAALSEGKDAIEEVIEPYLLQ 304

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           QGFI RTPRGR+L   A++HLG+  P 
Sbjct: 305 QGFIGRTPRGRVLTLKAFRHLGLAAPQ 331


>gi|85714393|ref|ZP_01045381.1| Holliday junction DNA helicase RuvB [Nitrobacter sp. Nb-311A]
 gi|85698840|gb|EAQ36709.1| Holliday junction DNA helicase RuvB [Nitrobacter sp. Nb-311A]
          Length = 349

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 224/320 (70%), Positives = 269/320 (84%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           +D   + LRP+ L EF GQ +A +NL++FI+AA+ R EALDHVLFVGPPGLGKTTLAQ+V
Sbjct: 15  DDVGDTALRPQKLSEFVGQRQARANLQIFIDAARKRKEALDHVLFVGPPGLGKTTLAQIV 74

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           ARELGV FR+TSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRLS  VEE+LYPAMEDFQL
Sbjct: 75  ARELGVGFRATSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSPAVEEVLYPAMEDFQL 134

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           DL++GEGP+ARSVKI L++FTL+ ATTR GLLTNPL+DRFGIP+RLNFY  ++L+ IV R
Sbjct: 135 DLIIGEGPAARSVKIELAKFTLVGATTRAGLLTNPLRDRFGIPVRLNFYTEDELEKIVSR 194

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
           GA++ G+ +T + A EIA R+RGTPRIAGRLLRRVRDFA  A A +I R+IAD AL  L 
Sbjct: 195 GARVLGVGMTADGANEIARRARGTPRIAGRLLRRVRDFASAADAASIDRKIADHALGALE 254

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D  G D +D RYLT IA N+GGGPVG+ET++A LSEPRDAIED+IEPY+IQ G++QRTP
Sbjct: 255 VDAAGLDAMDRRYLTTIALNYGGGPVGVETMAAALSEPRDAIEDIIEPYLIQCGYLQRTP 314

Query: 315 RGRLLMPIAWQHLGIDIPHR 334
           RGRLL   A++HLG+  P R
Sbjct: 315 RGRLLTSHAFRHLGLAEPTR 334


>gi|91978628|ref|YP_571287.1| Holliday junction DNA helicase RuvB [Rhodopseudomonas palustris
           BisB5]
 gi|91685084|gb|ABE41386.1| Holliday junction DNA helicase subunit RuvB [Rhodopseudomonas
           palustris BisB5]
          Length = 360

 Score =  446 bits (1148), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 226/320 (70%), Positives = 271/320 (84%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           +D   + LRP+ L EF GQ +A +NL++FI+AA+ R EALDHVLFVGPPGLGKTTLAQ+V
Sbjct: 26  DDLGDAALRPQHLSEFVGQQQARANLQIFIDAARKRKEALDHVLFVGPPGLGKTTLAQIV 85

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           ARELGV FR+TSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRLS  VEE+LYPAMEDFQL
Sbjct: 86  ARELGVGFRATSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSPAVEEVLYPAMEDFQL 145

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           DL++GEGP+ARSVKI+LS+FTL+ ATTR GLLTNPL+DRFGIP+RLNFY IE+L++IV+R
Sbjct: 146 DLIIGEGPAARSVKIDLSKFTLVGATTRAGLLTNPLRDRFGIPVRLNFYTIEELESIVKR 205

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
           GA++ G  +T + A EIA R+RGTPRIAGRLLRRVRDFA  A A  I R+IAD AL  L 
Sbjct: 206 GARVLGTGITADGANEIARRARGTPRIAGRLLRRVRDFASAADADAIDRKIADHALGALE 265

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D  G D +D RYL+ IA N+GGGPVG+ET++A LSEPRDAIED+IEPY+IQ G++QRTP
Sbjct: 266 VDAAGLDAMDRRYLSTIALNYGGGPVGVETMAAALSEPRDAIEDIIEPYLIQCGYLQRTP 325

Query: 315 RGRLLMPIAWQHLGIDIPHR 334
           RGRLL   A++HLG+  P R
Sbjct: 326 RGRLLTASAFRHLGLAEPAR 345


>gi|172046846|sp|Q130V3|RUVB_RHOPS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
          Length = 348

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 226/320 (70%), Positives = 271/320 (84%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           +D   + LRP+ L EF GQ +A +NL++FI+AA+ R EALDHVLFVGPPGLGKTTLAQ+V
Sbjct: 14  DDLGDAALRPQHLSEFVGQQQARANLQIFIDAARKRKEALDHVLFVGPPGLGKTTLAQIV 73

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           ARELGV FR+TSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRLS  VEE+LYPAMEDFQL
Sbjct: 74  ARELGVGFRATSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSPAVEEVLYPAMEDFQL 133

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           DL++GEGP+ARSVKI+LS+FTL+ ATTR GLLTNPL+DRFGIP+RLNFY IE+L++IV+R
Sbjct: 134 DLIIGEGPAARSVKIDLSKFTLVGATTRAGLLTNPLRDRFGIPVRLNFYTIEELESIVKR 193

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
           GA++ G  +T + A EIA R+RGTPRIAGRLLRRVRDFA  A A  I R+IAD AL  L 
Sbjct: 194 GARVLGTGITADGANEIARRARGTPRIAGRLLRRVRDFASAADADAIDRKIADHALGALE 253

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D  G D +D RYL+ IA N+GGGPVG+ET++A LSEPRDAIED+IEPY+IQ G++QRTP
Sbjct: 254 VDAAGLDAMDRRYLSTIALNYGGGPVGVETMAAALSEPRDAIEDIIEPYLIQCGYLQRTP 313

Query: 315 RGRLLMPIAWQHLGIDIPHR 334
           RGRLL   A++HLG+  P R
Sbjct: 314 RGRLLTASAFRHLGLAEPAR 333


>gi|92118981|ref|YP_578710.1| Holliday junction DNA helicase RuvB [Nitrobacter hamburgensis X14]
 gi|123083536|sp|Q1QHP7|RUVB_NITHX RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|91801875|gb|ABE64250.1| Holliday junction DNA helicase RuvB [Nitrobacter hamburgensis X14]
          Length = 347

 Score =  445 bits (1145), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 225/334 (67%), Positives = 275/334 (82%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D   +++     +D   ++LRP+ L EF GQ +A +NL++FI+AA+ R EALDHVLFV
Sbjct: 1   MTDVPRMVTPERRSDDVGDTVLRPQRLAEFVGQAQARANLQIFIDAARKRKEALDHVLFV 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ+VARELGV FR+TSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRLS  
Sbjct: 61  GPPGLGKTTLAQIVARELGVGFRATSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSPA 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDFQLDL++GEGP+ARSVKI LS+FTL+ ATTR GLLTNPL+DRFGIP+RL
Sbjct: 121 VEEVLYPAMEDFQLDLIIGEGPAARSVKIELSKFTLVGATTRAGLLTNPLRDRFGIPVRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           NFY +++L+ IV RGA++  + +T + A EIA R+RGTPRIAGRLLRRVRDFA  A A +
Sbjct: 181 NFYTVDELEKIVSRGARVLDVGMTADGANEIARRARGTPRIAGRLLRRVRDFASAADAAS 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I R+IAD AL  L +D  G D +D RYLT IA N+GGGPVG+ET++A LSEPRDAIED+I
Sbjct: 241 INRKIADHALGALEVDAAGLDAMDRRYLTTIALNYGGGPVGVETMAAALSEPRDAIEDII 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           EP++IQ G++QRTPRGRLL   A++HLG+  P R
Sbjct: 301 EPFLIQCGYLQRTPRGRLLTSHAFRHLGLTEPSR 334


>gi|299134171|ref|ZP_07027364.1| Holliday junction DNA helicase RuvB [Afipia sp. 1NLS2]
 gi|298590918|gb|EFI51120.1| Holliday junction DNA helicase RuvB [Afipia sp. 1NLS2]
          Length = 346

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 224/320 (70%), Positives = 270/320 (84%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           +D   + LRP+ L EF GQ +A +NL+VFI+AA+ R EALDHVLFVGPPGLGKTTLAQ+V
Sbjct: 14  DDIGDTSLRPQNLSEFVGQAQARANLQVFIDAARKRNEALDHVLFVGPPGLGKTTLAQIV 73

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           ARELGV FR+TSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRL+  VEE+LYPAMEDFQL
Sbjct: 74  ARELGVGFRATSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLNPAVEEVLYPAMEDFQL 133

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           DL++GEGP+ARSVKI+L++FTL+ ATTR GLLTNPL+DRFGIP+RLNFY  ++L+ IV R
Sbjct: 134 DLIIGEGPAARSVKIDLAKFTLVGATTRAGLLTNPLRDRFGIPLRLNFYTEDELEKIVTR 193

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
           GA++ G+ +T + A EIA R+RGTPRIAGRLLRRVRDFA  A A  I R+IAD AL  L 
Sbjct: 194 GARVLGIGMTKDGANEIARRARGTPRIAGRLLRRVRDFASAADADAIDRKIADHALGALE 253

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +DK G D +D RYL+ IA N+GGGPVG+ET++A LSEPRDAIED+IEPY+IQ G++QRTP
Sbjct: 254 VDKAGLDAMDRRYLSTIALNYGGGPVGVETMAAALSEPRDAIEDIIEPYLIQCGYLQRTP 313

Query: 315 RGRLLMPIAWQHLGIDIPHR 334
           RGRLL   A++HLG+  P R
Sbjct: 314 RGRLLTDHAFRHLGLAAPSR 333


>gi|103485828|ref|YP_615389.1| Holliday junction DNA helicase RuvB [Sphingopyxis alaskensis
           RB2256]
 gi|122985270|sp|Q1GWB6|RUVB_SPHAL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|98975905|gb|ABF52056.1| Holliday junction DNA helicase RuvB [Sphingopyxis alaskensis
           RB2256]
          Length = 338

 Score =  442 bits (1137), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 223/320 (69%), Positives = 259/320 (80%), Gaps = 1/320 (0%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           + EDAD +L RP+TL EF GQ  A  NL++FIEAAKAR +ALDHVLF GPPGLGKTTLAQ
Sbjct: 10  TPEDADAAL-RPKTLAEFVGQAAARENLRIFIEAAKARGDALDHVLFFGPPGLGKTTLAQ 68

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           +VARELGV FRSTSGPVIAKAGDLAALLTNLED DVLFIDEIHRLS  VEEILYPAMED 
Sbjct: 69  IVARELGVGFRSTSGPVIAKAGDLAALLTNLEDGDVLFIDEIHRLSPAVEEILYPAMEDR 128

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            LD+M+GEGPSARSV+I+L +FTL+ ATTR GLLT PL+DRFGIP+RLNFY   +L+ ++
Sbjct: 129 ALDIMIGEGPSARSVRIDLPQFTLVGATTRQGLLTTPLRDRFGIPVRLNFYTHAELEQVI 188

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R A+L GLA+  + A EIA RSRGTPRIAGRLLRRVRDFA VA    +    ADAAL R
Sbjct: 189 GRAARLLGLAIAPDGALEIAKRSRGTPRIAGRLLRRVRDFAAVAGHAIVDARAADAALNR 248

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D +G D +D RYLTMIA  + GGPVG+ET++AGLSEPRD IED+IEPY++Q G I R
Sbjct: 249 LEVDALGLDAMDRRYLTMIADIYRGGPVGVETLAAGLSEPRDTIEDVIEPYLLQIGLIAR 308

Query: 313 TPRGRLLMPIAWQHLGIDIP 332
           T RGR L   AW+HLG++ P
Sbjct: 309 TARGRTLNASAWKHLGLNPP 328


>gi|87198448|ref|YP_495705.1| Holliday junction DNA helicase B [Novosphingobium aromaticivorans
           DSM 12444]
 gi|97190186|sp|Q2GBA2|RUVB_NOVAD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|87134129|gb|ABD24871.1| Holliday junction DNA helicase RuvB [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 342

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 223/326 (68%), Positives = 260/326 (79%), Gaps = 1/326 (0%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           LLS     ED D +L RP+TL EF GQ  A  NL+VFIE+AK R EA+DHVLF GPPGLG
Sbjct: 6   LLSSASQIEDQDAAL-RPKTLAEFVGQAGAKDNLQVFIESAKQRREAMDHVLFFGPPGLG 64

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTTLAQ++ARELGVNFR+TSGPVIAKAGDLAALLTNLE  DVLFIDEIHRL+ +VEE+LY
Sbjct: 65  KTTLAQIIARELGVNFRATSGPVIAKAGDLAALLTNLEHGDVLFIDEIHRLNPVVEEVLY 124

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           PAMED  LDL++GEGPSARSV+I+L  FTLI ATTR GLL  PL+DRFGIP+RL FY +E
Sbjct: 125 PAMEDRALDLIIGEGPSARSVRIDLPPFTLIGATTRQGLLQTPLRDRFGIPVRLQFYSVE 184

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +L+ +V RGA L G+ +    A EIA RSRGTPR+AGRLLRRVRDFA+VA A+ IT+ IA
Sbjct: 185 ELERVVARGASLMGIGIDKGGATEIARRSRGTPRVAGRLLRRVRDFAQVAGAEKITQSIA 244

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           D AL RL +DK+G D  D RYLTMIA  + GGPVG+ET++AGLSEPRD IE++IEPY+IQ
Sbjct: 245 DNALTRLEVDKIGLDLQDRRYLTMIADIYKGGPVGVETLAAGLSEPRDTIEEVIEPYLIQ 304

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIP 332
            G I RT RGR L    WQHLG+  P
Sbjct: 305 LGMIARTARGRCLNDRGWQHLGLAPP 330


>gi|114771192|ref|ZP_01448612.1| Holliday junction DNA helicase B [alpha proteobacterium HTCC2255]
 gi|114548117|gb|EAU51004.1| Holliday junction DNA helicase B [alpha proteobacterium HTCC2255]
          Length = 347

 Score =  438 bits (1127), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 208/312 (66%), Positives = 259/312 (83%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L +FTGQ EA +NLKVFIE+AK R +A+DH LF GPPGLGKTTLAQ++++ELGVN
Sbjct: 24  LRPQNLNDFTGQAEARANLKVFIESAKKRGQAMDHTLFYGPPGLGKTTLAQIISKELGVN 83

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           FR TSGPV+AKAGDLAA+LTNLE+RDVLFIDEIHRL+ +VEE+LYPA+EDF+LDLM+GEG
Sbjct: 84  FRMTSGPVLAKAGDLAAILTNLEERDVLFIDEIHRLNPVVEEVLYPALEDFELDLMIGEG 143

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARSV+I+L  FTL+ ATTR+GLLT PL+DRFGIP RL FY +++L  IV+RGA+L G+
Sbjct: 144 PAARSVRIDLQPFTLVGATTRLGLLTTPLRDRFGIPTRLEFYTVDELCLIVERGARLMGI 203

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
             + + A EIA R+RGTPRIAGRLLRRV DFA V    TI++E+AD +L RL +D +G D
Sbjct: 204 EASADGAKEIARRARGTPRIAGRLLRRVVDFATVEGNGTISKELADNSLTRLGVDDLGLD 263

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             D RYL M+A N+ GGPVGIETI+A LSE RDAIE+++EP+++QQG IQRTPRGR+L  
Sbjct: 264 GADRRYLRMVAENYAGGPVGIETIAAALSESRDAIEEVVEPFLLQQGLIQRTPRGRMLGQ 323

Query: 322 IAWQHLGIDIPH 333
            AW HLG+  P 
Sbjct: 324 KAWSHLGMRAPK 335


>gi|83312315|ref|YP_422579.1| Holliday junction DNA helicase RuvB [Magnetospirillum magneticum
           AMB-1]
 gi|97190129|sp|Q2W2A5|RUVB_MAGMM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|82947156|dbj|BAE52020.1| Holliday junction resolvasome, helicase subunit [Magnetospirillum
           magneticum AMB-1]
          Length = 347

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 214/331 (64%), Positives = 268/331 (80%), Gaps = 5/331 (1%)

Query: 7   LLSRNVSQE----DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           + SR VS E    DA++SL RP++L++F GQ + C NLKVFI AA+AR EALDHVLF GP
Sbjct: 1   MTSRVVSPEQNPNDAEMSL-RPQSLDDFVGQRQVCENLKVFISAARARGEALDHVLFHGP 59

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLAQ++ARELGV FR+TSGPVI +AGDLAALLTNLE RDVLFIDEIHRL+  +E
Sbjct: 60  PGLGKTTLAQIMARELGVGFRATSGPVIQRAGDLAALLTNLEPRDVLFIDEIHRLNPAIE 119

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMEDFQLDL++GEGP+ARSV+I L  FTL+ ATTR GLLT PL++RFGIP R+NF
Sbjct: 120 EVLYPAMEDFQLDLIIGEGPAARSVRIELPPFTLVGATTRSGLLTTPLRERFGIPCRMNF 179

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           YE  +L+ IV RGA++ G A+T + A E+A RSRGTPR+AGRLLRRVRDFA VA    + 
Sbjct: 180 YEPAELEAIVSRGARVLGFALTPDGAAEVARRSRGTPRVAGRLLRRVRDFAVVAGRSPVD 239

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             +ADAAL RL +D++G D +D RYL  IA N+GGGPVG+ET++A LSE RD +E+++EP
Sbjct: 240 ALVADAALNRLEVDRIGLDAMDRRYLRCIAENYGGGPVGVETLAAALSESRDTLEEVVEP 299

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           Y++QQG IQRTPRGR+L    ++H+G++ P 
Sbjct: 300 YLLQQGMIQRTPRGRMLSASGFKHIGLNPPK 330


>gi|259417288|ref|ZP_05741207.1| holliday junction DNA helicase RuvB [Silicibacter sp. TrichCH4B]
 gi|259346194|gb|EEW58008.1| holliday junction DNA helicase RuvB [Silicibacter sp. TrichCH4B]
          Length = 339

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 221/333 (66%), Positives = 263/333 (78%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M+D +  L  +   ED D +L RP+ L EF GQ EA +NL+VFIE+A+ R EA+DH LF 
Sbjct: 1   MIDADPTLRPDPLPEDNDRAL-RPQGLGEFIGQAEARANLRVFIESARRRGEAMDHTLFH 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ+VARELGVNFR TSGPV+AKAGDLAA+LTNLE RDVLFIDEIHRL+  
Sbjct: 60  GPPGLGKTTLAQIVARELGVNFRMTSGPVLAKAGDLAAILTNLEARDVLFIDEIHRLNPA 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDF+LDL++GEGP+AR+V+I L  FTL+ ATTR+GLLT PL+DRFGIP RL
Sbjct: 120 VEEVLYPAMEDFELDLVIGEGPAARTVRIELQPFTLVGATTRMGLLTTPLRDRFGIPTRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY +++L  IV R A+  G    D  A EIA R+RGTPRIAGRLLRRV DFA V    T
Sbjct: 180 QFYTVDELFEIVSRNARKLGAPADDAGAREIARRARGTPRIAGRLLRRVVDFAVVEGDGT 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           ITRE+AD AL RL +DK+G D  D RYL ++A N+GGGPVGIET+SA LSE RDA+E++I
Sbjct: 240 ITRELADGALTRLGVDKLGLDGADRRYLRLVAENYGGGPVGIETMSAALSESRDALEEVI 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY++QQG IQRTPRGR+L   AWQHLGI  P 
Sbjct: 300 EPYLLQQGLIQRTPRGRMLAQKAWQHLGIAPPK 332


>gi|56551054|ref|YP_161893.1| Holliday junction DNA helicase RuvB [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|241761368|ref|ZP_04759456.1| Holliday junction DNA helicase RuvB [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|260753283|ref|YP_003226176.1| Holliday junction DNA helicase RuvB [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|81820941|sp|Q5NR72|RUVB_ZYMMO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|56542628|gb|AAV88782.1| Holliday junction DNA helicase RuvB [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|241374275|gb|EER63772.1| Holliday junction DNA helicase RuvB [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|258552646|gb|ACV75592.1| Holliday junction DNA helicase RuvB [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 347

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 216/331 (65%), Positives = 263/331 (79%), Gaps = 1/331 (0%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M R  LL+      D D +L RPR+L+EF GQ  A  N++VFIEAAK R E+LDHVLF G
Sbjct: 1   MTRNSLLNPEAENADPDQAL-RPRSLDEFIGQQAARENIRVFIEAAKKRQESLDHVLFFG 59

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLAQ++ARE+GV FR+TSGPVI K+GDLAALLTNLED DVLFIDEIHRL  +V
Sbjct: 60  PPGLGKTTLAQIIAREMGVGFRATSGPVIVKSGDLAALLTNLEDGDVLFIDEIHRLQPVV 119

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMED  LDLM+GEGPSARSV+I+L  FTL+ ATTR GLL+ PL+DRFGIP+RL 
Sbjct: 120 EEVLYPAMEDRALDLMIGEGPSARSVRIDLPHFTLVGATTRQGLLSTPLRDRFGIPVRLQ 179

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY IE+L+ ++ R A+L G+ +  E A EIA RSRGTPRIAGRLLRRVRDFA+VA +K +
Sbjct: 180 FYSIEELRQVITRAARLLGMEIAPEGAEEIAKRSRGTPRIAGRLLRRVRDFADVAGSKIV 239

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
            R IAD AL RL +DK+G D +D RYL MIA  + GGPVG++T++AGLSEPRD +E++IE
Sbjct: 240 DRFIADEALNRLEVDKLGLDLMDRRYLMMIADIYKGGPVGLDTLAAGLSEPRDTVEEVIE 299

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           PY+IQ G + RT RGR L  +AW+HLG+  P
Sbjct: 300 PYLIQLGLVARTARGRQLNGLAWRHLGLTDP 330


>gi|332188830|ref|ZP_08390539.1| holliday junction DNA helicase RuvB [Sphingomonas sp. S17]
 gi|332011140|gb|EGI53236.1| holliday junction DNA helicase RuvB [Sphingomonas sp. S17]
          Length = 341

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 217/332 (65%), Positives = 264/332 (79%), Gaps = 1/332 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D++ LLS +   ED D +L RP++L+EF GQ  A  NL+VFI+AAK R +ALDHVLF 
Sbjct: 1   MTDQDRLLSASRRPEDVDAAL-RPKSLDEFVGQHAARDNLRVFIQAAKGRGDALDHVLFF 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++ARE+GV FR+TSGPVIAK+GDLAALLTNLED DVLFIDEIHRL   
Sbjct: 60  GPPGLGKTTLAQIIAREMGVGFRATSGPVIAKSGDLAALLTNLEDGDVLFIDEIHRLQPA 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMED  LDLM+GEGPSARSV+I+L RFTL+ ATTR GLLT PL+DRFGIP+RL
Sbjct: 120 VEEVLYPAMEDRVLDLMIGEGPSARSVRIDLPRFTLVGATTRQGLLTTPLRDRFGIPVRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY +E+L  +V R A+L  L + ++ A E+A RSRGTPRIAGRLLRRVRDFA VA  + 
Sbjct: 180 QFYTVEELTRVVTRAARLLDLPIAEDGAIEVARRSRGTPRIAGRLLRRVRDFASVAGHEI 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +    AD AL RL +D +G D +D RYLTMIA  + GGPVG+ET++AGLSEPRD IE++I
Sbjct: 240 VHAAAADQALNRLEVDSLGLDAMDRRYLTMIADVYRGGPVGVETLAAGLSEPRDTIEEVI 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EPY+IQ G + RT RGR+L P  W+HLG++ P
Sbjct: 300 EPYLIQLGLLARTARGRILNPGGWKHLGLNPP 331


>gi|89068046|ref|ZP_01155463.1| Holliday junction DNA helicase RuvB [Oceanicola granulosus
           HTCC2516]
 gi|89046285|gb|EAR52342.1| Holliday junction DNA helicase RuvB [Oceanicola granulosus
           HTCC2516]
          Length = 342

 Score =  436 bits (1121), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 217/318 (68%), Positives = 261/318 (82%), Gaps = 1/318 (0%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           ED D +L RP+TL+EF GQ EA +NLKVFIE+A+ R EA+DHVLF GPPGLGKTTLAQ++
Sbjct: 15  EDGDRAL-RPQTLDEFIGQAEARANLKVFIESARRRGEAMDHVLFHGPPGLGKTTLAQIM 73

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           ARELGV+FR TSGPV+AKAGDLAA+LTNLE RDVLFIDEIHRL+  VEE+LYPA+EDF+L
Sbjct: 74  ARELGVSFRMTSGPVLAKAGDLAAILTNLEARDVLFIDEIHRLNPAVEEVLYPALEDFEL 133

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           DL++GEGP+AR+V+I L  FTL+ ATTR+GLLT PL+DRFGIP RL FY +E+L  IV R
Sbjct: 134 DLVIGEGPAARTVRIELQPFTLVGATTRLGLLTTPLRDRFGIPTRLQFYSVEELHEIVTR 193

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
           GA+L G   TD  A EIA R+RGTPRIAGRLLRRV DFA V    T+T+ IAD AL RL 
Sbjct: 194 GARLLGAPATDGGAREIARRARGTPRIAGRLLRRVVDFAVVEGDGTVTQAIADRALTRLG 253

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D +G D  D RYL +IA ++GGGPVGIET+SA LSE RDA+E++IEPY++QQG IQRTP
Sbjct: 254 VDTLGLDGADRRYLQLIAESYGGGPVGIETLSAALSESRDALEEVIEPYLLQQGLIQRTP 313

Query: 315 RGRLLMPIAWQHLGIDIP 332
           RGR+L   AW+HLG+  P
Sbjct: 314 RGRMLAEGAWRHLGLAAP 331


>gi|163742240|ref|ZP_02149628.1| Holliday junction DNA helicase B [Phaeobacter gallaeciensis 2.10]
 gi|161384570|gb|EDQ08951.1| Holliday junction DNA helicase B [Phaeobacter gallaeciensis 2.10]
          Length = 343

 Score =  434 bits (1117), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 214/311 (68%), Positives = 253/311 (81%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L EF GQ EA +NL+VFIE+A+ R EA+DH LF GPPGLGKTTLAQ+VARELGVN
Sbjct: 25  LRPQGLGEFIGQAEARANLRVFIESARRRGEAMDHTLFHGPPGLGKTTLAQIVARELGVN 84

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           FR TSGPV+AKAGDLAA+LTNLE RDVLFIDEIHRL+  VEE+LYPAMEDF+LDL++GEG
Sbjct: 85  FRMTSGPVLAKAGDLAAILTNLESRDVLFIDEIHRLNPAVEEVLYPAMEDFELDLVIGEG 144

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+AR+V+I L  FTL+ ATTR+GLLT PL+DRFGIP RL FY +++L  IV R A+  G 
Sbjct: 145 PAARTVRIELQPFTLVGATTRMGLLTTPLRDRFGIPTRLQFYTVDELFEIVSRNARKLGA 204

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
              DE A EIA R+RGTPRIAGRLLRRV DFA V    TITRE+AD AL RL +D++G D
Sbjct: 205 PADDEGAREIARRARGTPRIAGRLLRRVVDFAVVEGDGTITRELADGALTRLGVDQLGLD 264

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             D RYL M+A N+GGGPVGIET+SA LSE RDA+E++IEPY++QQG IQRTPRGR+L  
Sbjct: 265 GADRRYLRMVAENYGGGPVGIETMSAALSESRDALEEVIEPYLLQQGLIQRTPRGRMLAH 324

Query: 322 IAWQHLGIDIP 332
            AW HLG+  P
Sbjct: 325 KAWTHLGLTPP 335


>gi|296283073|ref|ZP_06861071.1| Holliday junction DNA helicase RuvB [Citromicrobium bathyomarinum
           JL354]
          Length = 342

 Score =  434 bits (1117), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 215/318 (67%), Positives = 255/318 (80%), Gaps = 1/318 (0%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           +D D +L RP+TL EF GQ  A  NL VFI AAK R EA+DH LF GPPGLGKTTLAQ+V
Sbjct: 14  DDPDAAL-RPKTLTEFIGQEAARENLGVFIAAAKRRGEAMDHTLFFGPPGLGKTTLAQIV 72

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           ARELG  FRSTSGPVIAKAGDLAALLTNLE  DVLFIDEIHRL+ +VEE+LYPAMED  L
Sbjct: 73  ARELGAGFRSTSGPVIAKAGDLAALLTNLEPHDVLFIDEIHRLNPVVEEVLYPAMEDRAL 132

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           DLM+GEGPSARSV+I+L  FTLI ATTR GLLT PL+DRFGIP+RLNFY  E+L+ +V R
Sbjct: 133 DLMIGEGPSARSVRIDLPPFTLIGATTRQGLLTTPLRDRFGIPVRLNFYTHEELERVVTR 192

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
           GA   GL +  + A EIA RSRGTPR+AGRLLRRVRDFA V +A +IT ++AD+AL +L 
Sbjct: 193 GANKLGLKIEPDGAREIARRSRGTPRVAGRLLRRVRDFASVDNAPSITAQVADSALTKLE 252

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D +G D +D RYLTMIA  +GGGPVGIET++AGL+EPRD +ED++EP++IQ G + RT 
Sbjct: 253 VDSLGLDAMDRRYLTMIAETYGGGPVGIETLAAGLAEPRDTLEDVVEPFLIQLGLVARTA 312

Query: 315 RGRLLMPIAWQHLGIDIP 332
           RGR L    WQHLG+ +P
Sbjct: 313 RGRCLNAGGWQHLGLAVP 330


>gi|115526755|ref|YP_783666.1| Holliday junction DNA helicase RuvB [Rhodopseudomonas palustris
           BisA53]
 gi|115520702|gb|ABJ08686.1| Holliday junction DNA helicase RuvB [Rhodopseudomonas palustris
           BisA53]
          Length = 371

 Score =  434 bits (1117), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 226/320 (70%), Positives = 268/320 (83%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           +D   + LRP+TL EF GQ +A +NL++FI+AA+ R EALDHVLFVGPPGLGKTTLAQ+V
Sbjct: 39  DDVGDTALRPQTLAEFVGQQQARANLQIFIDAARKRQEALDHVLFVGPPGLGKTTLAQIV 98

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           ARELGV FR+TSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRLS  VEE+LYPAMEDFQL
Sbjct: 99  ARELGVGFRATSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSPAVEEVLYPAMEDFQL 158

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           DL++GEGP+ARSVKI LS+FTL+ ATTR GLLTNPL+DRFGIPIRLNFY +E+L+ IV R
Sbjct: 159 DLIIGEGPAARSVKIELSKFTLVGATTRAGLLTNPLRDRFGIPIRLNFYTVEELEGIVSR 218

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
           GA++ G  +T + A EIA R+RGTPRIAGRLLRRVRDFA  A A  I R IAD AL  L 
Sbjct: 219 GARVLGTGITPDGANEIARRARGTPRIAGRLLRRVRDFASAADAAAIDRRIADHALSALE 278

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D  G D +D RYL+ IA N+GGGPVG+ET++A LSEPRDAIED+IEP++IQ G++QRTP
Sbjct: 279 VDAAGLDAMDRRYLSTIALNYGGGPVGVETMAAALSEPRDAIEDIIEPFLIQCGYLQRTP 338

Query: 315 RGRLLMPIAWQHLGIDIPHR 334
           RGRLL   A++HLG+  P R
Sbjct: 339 RGRLLTSHAFKHLGLAEPSR 358


>gi|172046771|sp|Q07H98|RUVB_RHOP5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
          Length = 347

 Score =  434 bits (1116), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 226/320 (70%), Positives = 268/320 (83%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           +D   + LRP+TL EF GQ +A +NL++FI+AA+ R EALDHVLFVGPPGLGKTTLAQ+V
Sbjct: 15  DDVGDTALRPQTLAEFVGQQQARANLQIFIDAARKRQEALDHVLFVGPPGLGKTTLAQIV 74

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           ARELGV FR+TSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRLS  VEE+LYPAMEDFQL
Sbjct: 75  ARELGVGFRATSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSPAVEEVLYPAMEDFQL 134

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           DL++GEGP+ARSVKI LS+FTL+ ATTR GLLTNPL+DRFGIPIRLNFY +E+L+ IV R
Sbjct: 135 DLIIGEGPAARSVKIELSKFTLVGATTRAGLLTNPLRDRFGIPIRLNFYTVEELEGIVSR 194

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
           GA++ G  +T + A EIA R+RGTPRIAGRLLRRVRDFA  A A  I R IAD AL  L 
Sbjct: 195 GARVLGTGITPDGANEIARRARGTPRIAGRLLRRVRDFASAADAAAIDRRIADHALSALE 254

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D  G D +D RYL+ IA N+GGGPVG+ET++A LSEPRDAIED+IEP++IQ G++QRTP
Sbjct: 255 VDAAGLDAMDRRYLSTIALNYGGGPVGVETMAAALSEPRDAIEDIIEPFLIQCGYLQRTP 314

Query: 315 RGRLLMPIAWQHLGIDIPHR 334
           RGRLL   A++HLG+  P R
Sbjct: 315 RGRLLTSHAFKHLGLAEPSR 334


>gi|84516658|ref|ZP_01004017.1| Holliday junction DNA helicase RuvB [Loktanella vestfoldensis
           SKA53]
 gi|84509694|gb|EAQ06152.1| Holliday junction DNA helicase RuvB [Loktanella vestfoldensis
           SKA53]
          Length = 339

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 217/318 (68%), Positives = 258/318 (81%), Gaps = 1/318 (0%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           EDAD +L RP+TL+EF GQ EA +NLKVFIE+A+ R EA+DH LF GPPGLGKTTLAQ++
Sbjct: 15  EDADRAL-RPQTLDEFIGQREARANLKVFIESARRRGEAMDHTLFHGPPGLGKTTLAQIM 73

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           ARELGV FR TSGPV+AKAGDLAA+LTNLE RDVLFIDEIHRL+  VEE+LYPA+EDF L
Sbjct: 74  ARELGVGFRMTSGPVLAKAGDLAAILTNLEARDVLFIDEIHRLNPAVEEVLYPALEDFAL 133

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           DL++GEGP+AR+V+I L  FTL+ ATTR+GLLT PL+DRFGIP RL FY  ++L  IV R
Sbjct: 134 DLVIGEGPAARTVRIELQPFTLVGATTRMGLLTTPLRDRFGIPTRLEFYTQDELHLIVTR 193

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A+L G    DE A EIA R+RGTPRIAGRLLRRV DFA V    T+T+EIAD AL RL 
Sbjct: 194 AARLLGAPAADEGAREIARRARGTPRIAGRLLRRVVDFAIVEGDGTVTQEIADMALNRLG 253

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D MG DQ D RYL +IA ++ GGPVGIET+SA LSE RD++ED+IEPY++Q+G IQRTP
Sbjct: 254 VDDMGLDQADRRYLRLIAESYAGGPVGIETLSAALSESRDSLEDVIEPYLLQKGLIQRTP 313

Query: 315 RGRLLMPIAWQHLGIDIP 332
           RGR+L   AW HLG+D P
Sbjct: 314 RGRMLAQAAWTHLGLDAP 331


>gi|85374912|ref|YP_458974.1| Holliday junction DNA helicase RuvB [Erythrobacter litoralis
           HTCC2594]
 gi|123099493|sp|Q2N814|RUVB_ERYLH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|84787995|gb|ABC64177.1| Holliday junction resolvasome helicase subunit [Erythrobacter
           litoralis HTCC2594]
          Length = 343

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 218/327 (66%), Positives = 259/327 (79%), Gaps = 1/327 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D   L + +   ED D++L RP++L EF GQ  A  NL VFIEAA++R EA+DH LF 
Sbjct: 1   MTDPIPLHTPDRQPEDPDVAL-RPKSLAEFVGQAAAKDNLAVFIEAARSRGEAMDHTLFF 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++ARELGV FR+TSGPVIAKAGDLAALLTNLE  DVLFIDEIHRL+ +
Sbjct: 60  GPPGLGKTTLAQIIARELGVGFRATSGPVIAKAGDLAALLTNLEPHDVLFIDEIHRLNPV 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMED  LDL++GEGP+ARSV+I+L  FTLI ATTR GLLT PL+DRFGIP+RL
Sbjct: 120 VEEVLYPAMEDRALDLIIGEGPAARSVRIDLPPFTLIGATTRQGLLTTPLRDRFGIPVRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           NFY  E+L+ +V RGA L GLA+    A EIA RSRGTPR+AGRLLRRVRDFAEV  A T
Sbjct: 180 NFYTEEELEKVVTRGAGLMGLAIDAAGAREIARRSRGTPRVAGRLLRRVRDFAEVQKAGT 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +T  IADAAL RL +D +G D +D RYLTMIA  + GGPVG+ET++AGL+EPRD IED++
Sbjct: 240 VTSPIADAALTRLEVDGLGLDAMDRRYLTMIADIYKGGPVGVETLAAGLAEPRDTIEDVV 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHL 327
           EPY+IQ G + RT RGR L    W+HL
Sbjct: 300 EPYLIQLGLVARTARGRCLNDRGWEHL 326


>gi|83592425|ref|YP_426177.1| Holliday junction DNA helicase RuvB [Rhodospirillum rubrum ATCC
           11170]
 gi|97190249|sp|Q2RVF5|RUVB_RHORT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|83575339|gb|ABC21890.1| Holliday junction DNA helicase RuvB [Rhodospirillum rubrum ATCC
           11170]
          Length = 350

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 209/311 (67%), Positives = 258/311 (82%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP++L +F GQ +   NL VF++AA+AR EA+DHVLF GPPGLGKTTLAQ+VARELGV 
Sbjct: 25  LRPQSLADFVGQRQTRENLGVFVQAARARGEAMDHVLFHGPPGLGKTTLAQIVARELGVG 84

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           FR TSGP+I KAGDLAA+LTNLE RDVLFIDEIHRL+  +EE+LYPAMEDFQLDL++GEG
Sbjct: 85  FRGTSGPMIVKAGDLAAILTNLEPRDVLFIDEIHRLNPAIEEVLYPAMEDFQLDLIIGEG 144

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARSV+I+L  FTL+ ATTR GLLT PL+DRFGIP+RL+FYE ++L  IV RG++L G+
Sbjct: 145 PAARSVRIDLPPFTLVGATTRSGLLTTPLRDRFGIPLRLDFYETDELVQIVTRGSRLLGM 204

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
           A+TDE A E+A RSRGTPR+AGRLLRRVRDFA VA    +   IADAAL RL +D  G D
Sbjct: 205 ALTDEGAREVARRSRGTPRVAGRLLRRVRDFAAVAGRSPVDAFIADAALNRLEVDGRGLD 264

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D RYL+ +A ++GGGPVG++T++A L+E RD +ED+IEPY+IQQGFI+RTPRGR+L  
Sbjct: 265 AMDRRYLSRMADHYGGGPVGVDTLAAALAEERDTVEDVIEPYLIQQGFIKRTPRGRMLTA 324

Query: 322 IAWQHLGIDIP 332
           IAW HLG+  P
Sbjct: 325 IAWTHLGLTPP 335


>gi|254475746|ref|ZP_05089132.1| Holliday junction DNA helicase RuvB [Ruegeria sp. R11]
 gi|214029989|gb|EEB70824.1| Holliday junction DNA helicase RuvB [Ruegeria sp. R11]
          Length = 343

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 215/311 (69%), Positives = 254/311 (81%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L EF GQ EA +NL+VFIE+A+ R EA+DH LF GPPGLGKTTLAQ+VARELGVN
Sbjct: 25  LRPQGLGEFIGQAEARANLRVFIESARRRGEAMDHTLFHGPPGLGKTTLAQIVARELGVN 84

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           FR TSGPV+AKAGDLAA+LTNLE RDVLFIDEIHRL+  VEE+LYPAMEDF+LDL++GEG
Sbjct: 85  FRMTSGPVLAKAGDLAAILTNLEARDVLFIDEIHRLNPAVEEVLYPAMEDFELDLVIGEG 144

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+AR+V+I L  FTL+ ATTR+GLLT PL+DRFGIP RL FY I++L  IV R A+  G 
Sbjct: 145 PAARTVRIELQPFTLVGATTRMGLLTTPLRDRFGIPTRLQFYTIDELFEIVSRNARKLGA 204

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
              D+ A EIA R+RGTPRIAGRLLRRV DFA V    TITR++AD AL RL +D++G D
Sbjct: 205 PADDDGAREIARRARGTPRIAGRLLRRVVDFAVVEGDGTITRDLADGALTRLGVDQLGLD 264

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             D RYL MIA N+GGGPVGIET+SA LSE RDA+E++IEPY++QQG IQRTPRGR+L  
Sbjct: 265 GADRRYLRMIAENYGGGPVGIETMSAALSESRDALEEVIEPYLLQQGLIQRTPRGRMLAH 324

Query: 322 IAWQHLGIDIP 332
            AW+HLGI  P
Sbjct: 325 KAWEHLGIRPP 335


>gi|163738343|ref|ZP_02145758.1| Holliday junction DNA helicase RuvB [Phaeobacter gallaeciensis
           BS107]
 gi|161388264|gb|EDQ12618.1| Holliday junction DNA helicase RuvB [Phaeobacter gallaeciensis
           BS107]
          Length = 349

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 213/311 (68%), Positives = 253/311 (81%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L EF GQ EA +NL+VFIE+A+ R EA+DH LF GPPGLGKTTLAQ+VARELGVN
Sbjct: 31  LRPQGLGEFIGQAEARANLRVFIESARRRGEAMDHTLFHGPPGLGKTTLAQIVARELGVN 90

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           FR TSGPV+AKAGDLAA+LTNLE RDVLFIDEIHRL+  VEE+LYPAMEDF+LDL++GEG
Sbjct: 91  FRMTSGPVLAKAGDLAAILTNLESRDVLFIDEIHRLNPAVEEVLYPAMEDFELDLVIGEG 150

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+AR+V+I L  FTL+ ATTR+GLLT PL+DRFGIP RL FY +++L  IV R A+  G 
Sbjct: 151 PAARTVRIELQPFTLVGATTRMGLLTTPLRDRFGIPTRLQFYTVDELFEIVSRNARKLGA 210

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
              D+ A EIA R+RGTPRIAGRLLRRV DFA V    TITRE+AD AL RL +D++G D
Sbjct: 211 PADDDGAREIARRARGTPRIAGRLLRRVVDFAVVEGDGTITRELADGALTRLGVDQLGLD 270

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             D RYL M+A N+GGGPVGIET+SA LSE RDA+E++IEPY++QQG IQRTPRGR+L  
Sbjct: 271 GADRRYLRMVAENYGGGPVGIETMSAALSESRDALEEVIEPYLLQQGLIQRTPRGRMLAH 330

Query: 322 IAWQHLGIDIP 332
            AW HLG+  P
Sbjct: 331 KAWTHLGLTPP 341


>gi|99082211|ref|YP_614365.1| Holliday junction DNA helicase RuvB [Ruegeria sp. TM1040]
 gi|123252171|sp|Q1GE13|RUVB_SILST RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|99038491|gb|ABF65103.1| Holliday junction DNA helicase RuvB [Ruegeria sp. TM1040]
          Length = 339

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 220/333 (66%), Positives = 261/333 (78%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M+D +  L      ED D +L RP+ L EF GQ EA +NL+VFIE+A+ R EA+DH LF 
Sbjct: 1   MIDADPTLRPEPLPEDNDRAL-RPQGLGEFIGQAEARANLRVFIESARRRGEAMDHTLFH 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ+VARELGVNFR TSGPV+AKAGDLAA+LTNLE RDVLFIDEIHRL+  
Sbjct: 60  GPPGLGKTTLAQIVARELGVNFRMTSGPVLAKAGDLAAILTNLEARDVLFIDEIHRLNPA 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDF+LDL++GEGP+AR+V+I L  FTL+ ATTR+GLLT PL+DRFGIP RL
Sbjct: 120 VEEVLYPAMEDFELDLVIGEGPAARTVRIELQPFTLVGATTRMGLLTTPLRDRFGIPTRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY I++L  IV R A+  G    D  A EIA R+RGTPRIAGRLLRRV DFA V    T
Sbjct: 180 QFYTIDELFEIVSRNARKLGAPADDAGAREIARRARGTPRIAGRLLRRVVDFAVVEGDGT 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           ITRE+AD AL RL +D++G D  D RYL ++A N+GGGPVGIET+SA LSE RDA+E++I
Sbjct: 240 ITRELADGALTRLGVDQLGLDGADRRYLRLVAENYGGGPVGIETMSAALSESRDALEEVI 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY++QQG IQRTPRGR+L   AW HLGI  P 
Sbjct: 300 EPYLLQQGLIQRTPRGRMLAQKAWTHLGIAPPK 332


>gi|23015564|ref|ZP_00055336.1| COG2255: Holliday junction resolvasome, helicase subunit
           [Magnetospirillum magnetotacticum MS-1]
          Length = 347

 Score =  432 bits (1111), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 208/327 (63%), Positives = 264/327 (80%), Gaps = 1/327 (0%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           ++S   +  DA+ SL RP +L++F GQ + C NLKVFI AA+AR +ALDHVLF GPPGLG
Sbjct: 5   VVSPEQNSADAETSL-RPLSLDDFVGQRQVCENLKVFISAARARGDALDHVLFHGPPGLG 63

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTTLAQ+VARELGV FR+TSGPVI +AGDLAALLTNLE  DVLFIDEIHRL+  +EE+LY
Sbjct: 64  KTTLAQIVARELGVGFRATSGPVIQRAGDLAALLTNLEANDVLFIDEIHRLNPAIEEVLY 123

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           PAMEDFQLDL++GEGP+ARSV+I+L RFTL+ ATTR GLLT PL++RFGIP R+NFYE  
Sbjct: 124 PAMEDFQLDLIIGEGPAARSVRIDLPRFTLVGATTRSGLLTTPLRERFGIPCRMNFYEPA 183

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +L++IV RGA++    +T + A E+A RSRGTPR+AGRLLRRVRDFA VA    +   +A
Sbjct: 184 ELESIVARGARVLNFDLTPDGAAEVARRSRGTPRVAGRLLRRVRDFAAVAGRSPVDAPVA 243

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           DAAL RL +D++G D +D RYL  IA N+GGGPVG+ET++A LSE RD +E+++EPY++Q
Sbjct: 244 DAALNRLEVDRIGLDAMDRRYLRCIAENYGGGPVGVETLAAALSESRDTLEEVVEPYLLQ 303

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           QG IQRTPRGR++    ++H+GI+ P 
Sbjct: 304 QGMIQRTPRGRMVSASGFKHIGINPPK 330


>gi|159043654|ref|YP_001532448.1| Holliday junction DNA helicase RuvB [Dinoroseobacter shibae DFL 12]
 gi|157911414|gb|ABV92847.1| holliday junction DNA helicase RuvB [Dinoroseobacter shibae DFL 12]
          Length = 357

 Score =  432 bits (1111), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 210/320 (65%), Positives = 259/320 (80%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           + D     LRP++L+ F GQ EA +NL+VF+E+A+ R EA+DHVLF GPPGLGKTTLAQ+
Sbjct: 15  ERDGADRALRPQSLDAFIGQAEARANLRVFVESARRRGEAMDHVLFHGPPGLGKTTLAQI 74

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +ARELGVNFR TSGPV+AKAGDLAALLTNLE RDVLFIDEIHRL+ +VEE+LYPA+EDF+
Sbjct: 75  MARELGVNFRMTSGPVLAKAGDLAALLTNLEARDVLFIDEIHRLNPVVEEVLYPALEDFE 134

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           LDL++GEGP+AR+V+I L  FTL+ ATTR+GLLT PL+DRFGIP+RL FY  E+L+ IV 
Sbjct: 135 LDLVIGEGPAARTVRIELQPFTLVGATTRLGLLTTPLRDRFGIPVRLQFYSAEELEQIVA 194

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           RGA++  +        EIA R+RGTPRIAGRLLRRV DFA V    TITR +AD AL RL
Sbjct: 195 RGARMLDVPAEPSGIAEIARRARGTPRIAGRLLRRVVDFALVEGDGTITRAVADGALTRL 254

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D+ G D  D RYL+++A N+GGGPVGIETISA LSE RDA+E++IEPY++QQGF+QRT
Sbjct: 255 GVDRAGLDGGDRRYLSLLADNYGGGPVGIETISAALSEARDAVEEVIEPYLLQQGFLQRT 314

Query: 314 PRGRLLMPIAWQHLGIDIPH 333
           PRGR+L   AW HLG++ P 
Sbjct: 315 PRGRMLARKAWAHLGLEPPR 334


>gi|254450147|ref|ZP_05063584.1| Holliday junction DNA helicase RuvB [Octadecabacter antarcticus
           238]
 gi|198264553|gb|EDY88823.1| Holliday junction DNA helicase RuvB [Octadecabacter antarcticus
           238]
          Length = 344

 Score =  431 bits (1109), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 214/311 (68%), Positives = 250/311 (80%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L EF GQ EA SNL VFIE+AK R EA+DH LF GPPGLGKTTLAQ++ARELGV 
Sbjct: 25  LRPQMLSEFVGQAEARSNLAVFIESAKMRGEAMDHTLFHGPPGLGKTTLAQIMARELGVG 84

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           FR TSGPV+AKAGDLAA+LTNLE RDVLFIDEIHRL+  VEE+LYPA+EDF+LDL++GEG
Sbjct: 85  FRMTSGPVLAKAGDLAAILTNLEARDVLFIDEIHRLNPAVEEVLYPALEDFELDLVIGEG 144

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+AR+V+I L  FTLI ATTR+GLLT PL+DRFGIP RL FY IE+L  IV RGA+L G 
Sbjct: 145 PAARTVRIELQPFTLIGATTRMGLLTTPLRDRFGIPTRLEFYTIEELHKIVTRGARLMGA 204

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
             T + A EIA R+RGTPRIAGRLLRRV DFA V    T+T  IAD+AL RL +D +G D
Sbjct: 205 PATPDGAQEIAKRARGTPRIAGRLLRRVVDFAIVEGDGTVTHAIADSALTRLGVDHLGLD 264

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             D RYL +IA N+ GGPVGIET+SA LSE RDA+E++IEPY++QQG IQRTPRGR+L  
Sbjct: 265 SADRRYLRLIAENYQGGPVGIETMSAALSESRDALEEVIEPYLLQQGLIQRTPRGRMLAQ 324

Query: 322 IAWQHLGIDIP 332
            AW HLG+  P
Sbjct: 325 KAWTHLGMAAP 335


>gi|119383445|ref|YP_914501.1| Holliday junction DNA helicase B [Paracoccus denitrificans PD1222]
 gi|166231509|sp|A1AZW1|RUVB_PARDP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|119373212|gb|ABL68805.1| Holliday junction DNA helicase RuvB [Paracoccus denitrificans
           PD1222]
          Length = 341

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 207/319 (64%), Positives = 259/319 (81%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           + D +   LRP+ LE+F GQ EA +NL+VFIE+A+ R +A+DH LF GPPGLGKTTLAQ+
Sbjct: 14  ESDGEDRALRPQRLEDFVGQAEARANLRVFIESARMRGKAMDHTLFHGPPGLGKTTLAQI 73

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +ARELGVNF+ TSGPV+A+AGDLAA+LTNLE RDVLFIDEIHR++  VEEILYPAMEDF+
Sbjct: 74  MARELGVNFKMTSGPVLARAGDLAAILTNLEARDVLFIDEIHRMNPAVEEILYPAMEDFE 133

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           LDL++GEGP+AR+V+I L  FTL+ ATTR+GLLT PL+DRFGIP RL FY IE+L  IV 
Sbjct: 134 LDLVIGEGPAARTVRIELQPFTLVGATTRLGLLTTPLRDRFGIPTRLQFYTIEELDLIVT 193

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           RGA+L G+    E   EIA R+RGTPRIAGRLLRRV DFA V     +TR+IAD+AL RL
Sbjct: 194 RGARLMGIPSEPEGTREIARRARGTPRIAGRLLRRVVDFALVEGDGRLTRKIADSALTRL 253

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D +G D  D RYLT++A ++GGGPVG+ET+SA LSE RD+IE++IEPY++QQG + RT
Sbjct: 254 GVDHLGLDTADRRYLTLMAEHYGGGPVGVETLSAALSESRDSIEEVIEPYLMQQGLVSRT 313

Query: 314 PRGRLLMPIAWQHLGIDIP 332
           PRGR+L  + W+HLG+D P
Sbjct: 314 PRGRMLARLGWRHLGLDAP 332


>gi|126737219|ref|ZP_01752954.1| Holliday junction DNA helicase B [Roseobacter sp. SK209-2-6]
 gi|126721804|gb|EBA18507.1| Holliday junction DNA helicase B [Roseobacter sp. SK209-2-6]
          Length = 343

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 213/313 (68%), Positives = 250/313 (79%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L EF GQ EA +NL+VFIE+A+ R EA+DH LF GPPGLGKTTLAQ+VARELGVN
Sbjct: 25  LRPQGLGEFIGQAEARANLRVFIESARRRGEAMDHTLFHGPPGLGKTTLAQIVARELGVN 84

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           FR TSGPV+AKAGDLAA+LTNLE RDVLFIDEIHRL+  VEE+LYPAMEDF+LDL++GEG
Sbjct: 85  FRMTSGPVLAKAGDLAAILTNLEARDVLFIDEIHRLNPAVEEVLYPAMEDFELDLVIGEG 144

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+AR+V+I L  FTL+ ATTR+GLLT PL+DRFGIP RL FY I++L  IV R A+  G 
Sbjct: 145 PAARTVRIELQPFTLVGATTRMGLLTTPLRDRFGIPTRLQFYTIDELHEIVTRNARKLGA 204

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
              D  A EIA R+RGTPRIAGRLLRRV DFA V     ITRE+AD AL RL +D +G D
Sbjct: 205 PADDAGAREIARRARGTPRIAGRLLRRVVDFAVVEGDGKITRELADGALTRLGVDNLGLD 264

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             D RYL +IA N+ GGPVGIET+SA LSE RDA+E++IEPY++QQG IQRTPRGR+L  
Sbjct: 265 GADRRYLNLIAENYSGGPVGIETLSAALSESRDALEEVIEPYLLQQGLIQRTPRGRMLAQ 324

Query: 322 IAWQHLGIDIPHR 334
            AW HLG+  P R
Sbjct: 325 KAWTHLGMPPPQR 337


>gi|260431114|ref|ZP_05785085.1| holliday junction DNA helicase RuvB [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260414942|gb|EEX08201.1| holliday junction DNA helicase RuvB [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 339

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 216/332 (65%), Positives = 261/332 (78%), Gaps = 1/332 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D +  L      ED D +L RP+ L+EF GQ EA +NL++FI++A+ R EA+DH LF 
Sbjct: 1   MADADPTLRPQPLPEDNDRAL-RPQGLDEFIGQAEARANLRIFIQSARQRNEAMDHTLFH 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++ARELGVNFR TSGPV+AKAGDLAA+LTNLE+RDVLFIDEIHRL+  
Sbjct: 60  GPPGLGKTTLAQIMARELGVNFRMTSGPVLAKAGDLAAILTNLEERDVLFIDEIHRLNPA 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDF+LDL++GEGP+AR+V+I L  FTL+ ATTR+GLLT PL+DRFGIP RL
Sbjct: 120 VEEVLYPAMEDFELDLVIGEGPAARTVRIELQPFTLVGATTRMGLLTTPLRDRFGIPTRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  ++L  IV R A+  G    D+ A EIA RSRGTPRIAGRLLRRV DFA V     
Sbjct: 180 QFYTEDELHEIVTRNARKLGAPAEDDGAREIARRSRGTPRIAGRLLRRVVDFAIVEGDGR 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           ITRE+AD AL RL +DK+G D  D RYL +IA N+GGGPVGIET+SA LSE RD++E++I
Sbjct: 240 ITRELADGALTRLGVDKLGLDGADRRYLKLIAENYGGGPVGIETLSAALSESRDSLEEVI 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EPY++QQG IQRTPRGR+L   AW HLG+  P
Sbjct: 300 EPYLLQQGLIQRTPRGRMLAQKAWTHLGMAAP 331


>gi|326386114|ref|ZP_08207738.1| Holliday junction DNA helicase B [Novosphingobium nitrogenifigens
           DSM 19370]
 gi|326209339|gb|EGD60132.1| Holliday junction DNA helicase B [Novosphingobium nitrogenifigens
           DSM 19370]
          Length = 346

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 215/328 (65%), Positives = 261/328 (79%), Gaps = 1/328 (0%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           LL+     ED D +L RP+TL EF GQ  A  NL+VFIE+A+ R E++DHVLF GPPGLG
Sbjct: 6   LLTPQRQPEDVDAAL-RPKTLGEFIGQEGARENLRVFIESARQRRESMDHVLFFGPPGLG 64

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTTLAQ++ARELGVNFR+TSGPVIAK+GDLAALLTNLE+ DVLFIDEIHRL+  VEE+LY
Sbjct: 65  KTTLAQIIARELGVNFRATSGPVIAKSGDLAALLTNLEEGDVLFIDEIHRLNPQVEEVLY 124

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           PAMED  LDL++GEGPSARSV+I+L  FTLI ATTR GLL  PL+DRFGIP+RL FY + 
Sbjct: 125 PAMEDRALDLIIGEGPSARSVRIDLPGFTLIGATTRQGLLQTPLRDRFGIPVRLQFYTVA 184

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +L+ +V RGA L G+ +  E A EIA R+RGTPR+AGRLLRRVRDFA+VA + TIT+ IA
Sbjct: 185 ELERVVTRGANLLGIGIEPEGAHEIARRARGTPRVAGRLLRRVRDFAQVAGSPTITQAIA 244

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           D +L RL +DK+G D  D RYL MIA  + GGPVG+ET++AGLSEPRD IE++IEPY+IQ
Sbjct: 245 DKSLTRLEVDKLGLDLQDRRYLMMIADIYKGGPVGVETLAAGLSEPRDTIEEVIEPYLIQ 304

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
            G + RT RGR L   AW HLG+ +P +
Sbjct: 305 LGLVARTARGRCLNDRAWHHLGLPVPQQ 332


>gi|240142617|ref|YP_002967130.1| ATP-dependent DNA helicase, component of RuvABC resolvasome
           [Methylobacterium extorquens AM1]
 gi|240012564|gb|ACS43789.1| ATP-dependent DNA helicase, component of RuvABC resolvasome
           [Methylobacterium extorquens AM1]
          Length = 344

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 213/313 (68%), Positives = 253/313 (80%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP +L +F GQ  A   L+++I+AA+ R +ALDHVLFVGPPGLGKTTLAQ+VARELGVN
Sbjct: 18  IRPTSLADFNGQRAAREQLQLWIDAARQRKDALDHVLFVGPPGLGKTTLAQIVARELGVN 77

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           F+STSGPVIAKAGDLAA LT L D DVLFIDEIHRL+  VEEILYPAMED+QLDLMVGEG
Sbjct: 78  FKSTSGPVIAKAGDLAATLTQLGDNDVLFIDEIHRLNPAVEEILYPAMEDYQLDLMVGEG 137

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            SARSVK++L +FTLI ATTR GLL+ PL+DRFGIP+RL FY IE+L+ +V R A + G+
Sbjct: 138 ASARSVKLDLPKFTLIGATTRSGLLSTPLRDRFGIPVRLEFYSIEELELVVTRAAGVFGI 197

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T E A E+A R+RGTPRIAGRLLRRVRD A V+ A TI REIAD AL  L +D  G D
Sbjct: 198 GITPEGANEVARRARGTPRIAGRLLRRVRDCAVVSGAATIDREIADRALGMLDVDDRGLD 257

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           +LD RYL ++A  F GGPVGIET++A LSEPRD IED +EPY+IQQGF+QRTPRGR++  
Sbjct: 258 RLDRRYLGIVAEAFAGGPVGIETVAAALSEPRDTIEDTLEPYLIQQGFLQRTPRGRVITA 317

Query: 322 IAWQHLGIDIPHR 334
            AW HLG+  P R
Sbjct: 318 AAWSHLGLAPPAR 330


>gi|255264190|ref|ZP_05343532.1| holliday junction DNA helicase RuvB [Thalassiobium sp. R2A62]
 gi|255106525|gb|EET49199.1| holliday junction DNA helicase RuvB [Thalassiobium sp. R2A62]
          Length = 339

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 207/311 (66%), Positives = 255/311 (81%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L+EF GQ EA +NLK+FI++A+ R EA+DH LF GPPGLGKTTLAQ++ARELGVN
Sbjct: 21  LRPQVLDEFIGQAEARANLKIFIQSARKREEAMDHTLFHGPPGLGKTTLAQIMARELGVN 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           FR TSGPV+AKAGDLAA+LTNLE +DVLFIDEIHRL+  VEE+LYPA+EDF+LDL++GEG
Sbjct: 81  FRMTSGPVLAKAGDLAAILTNLEAQDVLFIDEIHRLNPAVEEVLYPALEDFELDLVIGEG 140

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+AR+V+I L  FTL+ ATTR+GLLT PL+DRFGIP RL+FY  ++L  IV RGA+L G 
Sbjct: 141 PAARTVRIELQPFTLVGATTRMGLLTTPLRDRFGIPTRLHFYTTDELHEIVTRGARLMGC 200

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
              DE A EIA R+RGTPRIAGRLLRRV DFA V     +T+ IAD AL RL +D +G D
Sbjct: 201 PADDEGAREIAKRARGTPRIAGRLLRRVVDFAVVEGDGRVTQAIADRALTRLGVDHLGLD 260

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             D RYL ++A N+GGGPVGIET+SA LSE RD++E++IEP+++QQG IQRTPRGR+L  
Sbjct: 261 GADRRYLRLVAENYGGGPVGIETLSAALSESRDSLEEVIEPFLLQQGLIQRTPRGRMLAQ 320

Query: 322 IAWQHLGIDIP 332
            AW HLG+D+P
Sbjct: 321 KAWTHLGLDVP 331


>gi|163796369|ref|ZP_02190330.1| Holliday junction resolvasome, helicase subunit [alpha
           proteobacterium BAL199]
 gi|159178511|gb|EDP63053.1| Holliday junction resolvasome, helicase subunit [alpha
           proteobacterium BAL199]
          Length = 357

 Score =  429 bits (1103), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 208/323 (64%), Positives = 262/323 (81%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L++ + + ED   + LRP+TL++F GQ     NL++F++AA+ R EALDHVL  GPPGLG
Sbjct: 13  LIAGDRAPEDLGETTLRPQTLDDFVGQKRVRQNLRIFVDAARGRGEALDHVLLFGPPGLG 72

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTTLAQ+VARELGVNFR+TSGPVIAKAGDLAALLTNL  RDVLFIDEIHRL+  VEE+LY
Sbjct: 73  KTTLAQIVARELGVNFRATSGPVIAKAGDLAALLTNLGPRDVLFIDEIHRLNPAVEEVLY 132

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           PAMED+QLDL++GEGPSARS++I+L  FTL+AATTR GL+T PL++RFGIP+RL FY+ E
Sbjct: 133 PAMEDYQLDLIIGEGPSARSIRIDLPPFTLVAATTRSGLITTPLRERFGIPLRLEFYDTE 192

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +L +IV+RGA+L    +TD+ A EIA R+RGTPR+AGRLLRRVRDFA VA +  +  E+A
Sbjct: 193 ELTSIVRRGARLLDFDLTDDGAGEIARRARGTPRVAGRLLRRVRDFASVAGSGRVDAELA 252

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           DA+L RL ID+ G D +D RYL  IA N+GGGPVG ET+ A L E RD IE++IEPY++Q
Sbjct: 253 DASLTRLDIDQRGLDAMDRRYLGCIAENYGGGPVGAETLGAALGEQRDVIEEVIEPYLMQ 312

Query: 307 QGFIQRTPRGRLLMPIAWQHLGI 329
           QG +QRTPRGR+L    W++LG+
Sbjct: 313 QGLLQRTPRGRILSAAGWRYLGL 335


>gi|126733599|ref|ZP_01749346.1| Holliday junction DNA helicase RuvB [Roseobacter sp. CCS2]
 gi|126716465|gb|EBA13329.1| Holliday junction DNA helicase RuvB [Roseobacter sp. CCS2]
          Length = 339

 Score =  429 bits (1102), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 212/318 (66%), Positives = 258/318 (81%), Gaps = 1/318 (0%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           EDAD +L RP+TL+ F GQ  A +NL VFIE+A+ R EA+DH LF GPPGLGKTTLAQ++
Sbjct: 15  EDADRAL-RPQTLDAFIGQQAARANLSVFIESARRRGEAMDHTLFHGPPGLGKTTLAQIM 73

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           ARELGVNFR TSGPV+AKAGDLAA+LTNLE RDVLFIDEIHRL+  VEE+LYPA+EDF+L
Sbjct: 74  ARELGVNFRMTSGPVLAKAGDLAAILTNLEARDVLFIDEIHRLNPAVEEVLYPALEDFEL 133

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           DL++GEGP+AR+V+I L  FTL+ ATTR+GLLT PL+DRFGIP RL FY  ++L  IV R
Sbjct: 134 DLVIGEGPAARTVRIELQPFTLVGATTRMGLLTTPLRDRFGIPTRLEFYTEDELHEIVTR 193

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
           GA+L G   + E A EIA R+RGTPRIAGRLLRRV DFA V    T+T++IAD AL RL 
Sbjct: 194 GARLMGAPASPEGAREIARRARGTPRIAGRLLRRVVDFAIVEGDGTVTQQIADRALTRLG 253

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D +G D  D RYL +IA ++GGGPVG+ET+SA LSE RD++ED+IEPY++Q+G IQRTP
Sbjct: 254 VDHLGLDNADRRYLRLIAESYGGGPVGVETLSAALSESRDSLEDVIEPYLLQKGLIQRTP 313

Query: 315 RGRLLMPIAWQHLGIDIP 332
           RGR+L   AW HLG+D P
Sbjct: 314 RGRMLAQAAWAHLGLDAP 331


>gi|94496109|ref|ZP_01302687.1| Holliday junction DNA helicase RuvB [Sphingomonas sp. SKA58]
 gi|94424288|gb|EAT09311.1| Holliday junction DNA helicase RuvB [Sphingomonas sp. SKA58]
          Length = 339

 Score =  429 bits (1102), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 213/332 (64%), Positives = 265/332 (79%), Gaps = 1/332 (0%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M  + LL+     ED D +L RP++L+EF GQ  A  NL++FI+AAK+R +ALDHVLF G
Sbjct: 1   MTDDRLLTPARRPEDVDAAL-RPKSLDEFVGQQAARENLRIFIQAAKSRGDALDHVLFFG 59

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLAQ+VA+E+GV FR+TSGPVIAK+GDLAALLTNL++ DVLF+DEIHRL+  V
Sbjct: 60  PPGLGKTTLAQIVAKEMGVGFRATSGPVIAKSGDLAALLTNLDEGDVLFVDEIHRLNPAV 119

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMED  LDLM+GEGPSARSV+I+L RFTL+ ATTR GLLT PL+DRFGIP+RL 
Sbjct: 120 EEVLYPAMEDRALDLMIGEGPSARSVRIDLPRFTLVGATTRQGLLTTPLRDRFGIPVRLQ 179

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY +E+L+ +V+R A L  L++T + A EIA RSRGTPRIAGRLLRRVRDFA VA A  +
Sbjct: 180 FYTVEELERVVRRAAHLLDLSITSDGAVEIARRSRGTPRIAGRLLRRVRDFANVAGAPAV 239

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
            R++AD+AL RL +D++G D +D RYL MIA  + GGPVG+ET++AGLSE RD IE++IE
Sbjct: 240 DRQVADSALQRLEVDQLGLDLMDRRYLMMIADIYRGGPVGVETLAAGLSEARDTIEEVIE 299

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           PY+IQ G I RT RGR L    W+HLG+  P 
Sbjct: 300 PYLIQLGLIARTARGRCLNGPGWKHLGLHPPQ 331


>gi|148555053|ref|YP_001262635.1| Holliday junction DNA helicase RuvB [Sphingomonas wittichii RW1]
 gi|172048254|sp|A5V881|RUVB_SPHWW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|148500243|gb|ABQ68497.1| Holliday junction DNA helicase RuvB [Sphingomonas wittichii RW1]
          Length = 342

 Score =  428 bits (1101), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 215/332 (64%), Positives = 259/332 (78%), Gaps = 1/332 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D + LLS     ED D +L RPR+L+EF GQ  A  NL+VFIEAA+ R +ALDHVLF 
Sbjct: 1   MTDTDRLLSAGRRAEDVDAAL-RPRSLDEFVGQQAARDNLRVFIEAARQRGDALDHVLFF 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++A+E+G  FR+TSGPVIAK+GDLAALLTNLED DVLFIDEIHRL   
Sbjct: 60  GPPGLGKTTLAQIIAKEMGAGFRATSGPVIAKSGDLAALLTNLEDGDVLFIDEIHRLQPQ 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMED  LDLM+GEGPSARSV+I+L RFTL+ ATTR GL+T PL+DRFGIPIRL
Sbjct: 120 VEEVLYPAMEDRALDLMIGEGPSARSVRIDLPRFTLVGATTRQGLITTPLRDRFGIPIRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY +E+L+ +V R A+L  L +  + A EIA R+RGTPRIAGRLLRRVRDFA V  A  
Sbjct: 180 QFYTVEELERVVSRAARLLDLPIASDGAMEIARRARGTPRIAGRLLRRVRDFAHVLGADI 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +  ++AD +L RL +D +G D +D RYL MIA  + GGPVG+ET++AGLSEPRD IED+I
Sbjct: 240 VDAKVADQSLNRLEVDNLGLDAMDRRYLHMIADIYRGGPVGVETLAAGLSEPRDTIEDVI 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EPY+IQ G I RT RGR L    W+HLG++ P
Sbjct: 300 EPYLIQLGLIARTARGRCLNGRGWKHLGLNPP 331


>gi|254441549|ref|ZP_05055042.1| Holliday junction DNA helicase RuvB [Octadecabacter antarcticus
           307]
 gi|198251627|gb|EDY75942.1| Holliday junction DNA helicase RuvB [Octadecabacter antarcticus
           307]
          Length = 345

 Score =  428 bits (1101), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 211/311 (67%), Positives = 250/311 (80%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L EF GQ EA +NL VFIE+AK R EA+DH LF GPPGLGKTTLAQ++ARELGV 
Sbjct: 26  LRPQMLSEFVGQAEARANLAVFIESAKRRGEAMDHTLFHGPPGLGKTTLAQIMARELGVG 85

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           FR TSGPV+AKAGDLAA+LTNLE +DVLFIDEIHRL+  VEE+LYPA+EDF+LDL++G G
Sbjct: 86  FRMTSGPVLAKAGDLAAILTNLEAQDVLFIDEIHRLNPAVEEVLYPALEDFELDLVIGVG 145

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+AR+V+I L  FTLI ATTR+GLLT PL+DRFGIP RL FY +E+L  IV RGA+L G 
Sbjct: 146 PAARTVRIELQPFTLIGATTRMGLLTTPLRDRFGIPTRLEFYTVEELHKIVTRGARLMGA 205

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
             T + A EIA R+RGTPRIAGRLLRRV DFA V    T+T  IAD+AL RL +D +G D
Sbjct: 206 PATPDGAQEIAKRARGTPRIAGRLLRRVVDFAIVEGDGTVTHAIADSALTRLGVDHLGLD 265

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             D RYLT+IA N+ GGPVGIET+SA LSE RDA+E++IEPY++QQG IQRTPRGR+L  
Sbjct: 266 SADRRYLTLIAENYQGGPVGIETMSAALSESRDALEEVIEPYLLQQGLIQRTPRGRMLAQ 325

Query: 322 IAWQHLGIDIP 332
            AW HLG+  P
Sbjct: 326 KAWTHLGMAAP 336


>gi|84687717|ref|ZP_01015590.1| Holliday junction DNA helicase RuvB [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84664300|gb|EAQ10791.1| Holliday junction DNA helicase RuvB [Rhodobacterales bacterium
           HTCC2654]
          Length = 342

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 210/318 (66%), Positives = 259/318 (81%), Gaps = 1/318 (0%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           ED D +L RP+TL +F GQ EA +NL VFIE+A+ R EA+DH LF GPPGLGKTTLAQ++
Sbjct: 15  EDVDRAL-RPQTLADFIGQAEARANLSVFIESARRRGEAMDHALFHGPPGLGKTTLAQIM 73

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           ARELGVNFR TSGPV+AKAGDLAA+LTNLE RDVLFIDEIHRL+ +VEE+LYPA+EDF+L
Sbjct: 74  ARELGVNFRMTSGPVLAKAGDLAAILTNLEARDVLFIDEIHRLNPVVEEVLYPALEDFEL 133

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           DL++GEGP+AR+V+I L  FTL+ ATTR+GLLT PL+DRFGIP RL FY +E+L +IV +
Sbjct: 134 DLVIGEGPAARTVRIELQPFTLVGATTRLGLLTTPLRDRFGIPTRLQFYTVEELHSIVTK 193

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A   G    ++ A EIA R+RGTPRIAGRLLRRV DFA V     ITR IAD AL RL 
Sbjct: 194 NAIKLGAPADEDGALEIAKRARGTPRIAGRLLRRVVDFAVVEGDGRITRAIADNALTRLG 253

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D +G D  D RYLT++A ++GGGPVGIET++A LSE RDA+E++IEPY++QQG IQRTP
Sbjct: 254 VDHLGLDGADRRYLTLMAEHYGGGPVGIETLAAALSESRDALEEVIEPYLLQQGLIQRTP 313

Query: 315 RGRLLMPIAWQHLGIDIP 332
           RGR+L  +AW+HLG++ P
Sbjct: 314 RGRMLGHLAWRHLGLEAP 331


>gi|75676908|ref|YP_319329.1| Holliday junction DNA helicase B [Nitrobacter winogradskyi Nb-255]
 gi|97190181|sp|Q3SP14|RUVB_NITWN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|74421778|gb|ABA05977.1| Holliday junction DNA helicase RuvB [Nitrobacter winogradskyi
           Nb-255]
          Length = 348

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 222/320 (69%), Positives = 267/320 (83%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           +D   + LRP+ L EF GQ +A +NL++FI+AA+ R EALDHVLFVGPPGLGKTTLAQ+V
Sbjct: 15  DDVGDTALRPQKLSEFIGQRQARANLQIFIDAARKREEALDHVLFVGPPGLGKTTLAQIV 74

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           ARELGV FR+TSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRLS  VEE+LYPAMEDFQL
Sbjct: 75  ARELGVGFRATSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSPAVEEVLYPAMEDFQL 134

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           DL++GEGP+ARSVKI L++FTL+ ATTR GLLTNPL+DRFGIP+RLNFY  ++L+ IV R
Sbjct: 135 DLIIGEGPAARSVKIELAKFTLVGATTRAGLLTNPLRDRFGIPVRLNFYTEDELEKIVSR 194

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
           GA++  + +T + A EIA R+RGTPRIAGRLLRRVRDFAE A A  I R +AD AL  L 
Sbjct: 195 GARVLNVGMTPDGANEIARRARGTPRIAGRLLRRVRDFAEAADAAAIDRAVADHALGALE 254

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D  G D +D RYLT IA ++GGGPVG+ET++A LSEPRDAIED+IEPY+IQ G++QRTP
Sbjct: 255 VDAAGLDAMDRRYLTTIALSYGGGPVGVETMAAALSEPRDAIEDIIEPYLIQCGYLQRTP 314

Query: 315 RGRLLMPIAWQHLGIDIPHR 334
           RGRLL   A++HLG+  P R
Sbjct: 315 RGRLLTSHAFRHLGLTEPSR 334


>gi|254510650|ref|ZP_05122717.1| Holliday junction DNA helicase RuvB [Rhodobacteraceae bacterium
           KLH11]
 gi|221534361|gb|EEE37349.1| Holliday junction DNA helicase RuvB [Rhodobacteraceae bacterium
           KLH11]
          Length = 327

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 208/311 (66%), Positives = 250/311 (80%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L EF GQ EA +NL++FI++A+ R EA+DH LF GPPGLGKTTLAQ++ARELGVN
Sbjct: 9   LRPQGLGEFIGQAEARANLRIFIQSARQRGEAMDHTLFHGPPGLGKTTLAQIMARELGVN 68

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           FR TSGPV+AKAGDLAA+LTNLE RDVLFIDEIHRL+  VEE+LYPAMEDF+LDL++GEG
Sbjct: 69  FRMTSGPVLAKAGDLAAILTNLESRDVLFIDEIHRLNPAVEEVLYPAMEDFELDLVIGEG 128

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+AR+V+I L  FTL+ ATTR+GLLT PL+DRFGIP RL FY +++L  IV R A+  G 
Sbjct: 129 PAARTVRIELQPFTLVGATTRMGLLTTPLRDRFGIPTRLQFYTVDELHEIVTRNARKLGA 188

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
              D  A EIA RSRGTPRIAGRLLRRV DFA V     ITR++AD AL RL +D +G D
Sbjct: 189 PADDAGAREIARRSRGTPRIAGRLLRRVVDFAIVEGDGRITRDLADGALTRLGVDNLGLD 248

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             D RYL +IA N+GGGPVGIET+SA LSE RD++E++IEPY++QQG IQR+PRGR+L  
Sbjct: 249 GADRRYLKLIAENYGGGPVGIETLSAALSESRDSLEEVIEPYLLQQGLIQRSPRGRMLAQ 308

Query: 322 IAWQHLGIDIP 332
            AW HLGI  P
Sbjct: 309 KAWTHLGIAAP 319


>gi|126725529|ref|ZP_01741371.1| Holliday junction DNA helicase B [Rhodobacterales bacterium
           HTCC2150]
 gi|126704733|gb|EBA03824.1| Holliday junction DNA helicase B [Rhodobacterales bacterium
           HTCC2150]
          Length = 346

 Score =  426 bits (1094), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 210/318 (66%), Positives = 256/318 (80%), Gaps = 1/318 (0%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           ED+D +L RP+ L EF GQ EA +NL VFI++A+ R +A+DH LF GPPGLGKTTLAQ++
Sbjct: 19  EDSDRAL-RPQQLGEFIGQEEARANLSVFIQSARQRGQAMDHTLFHGPPGLGKTTLAQIM 77

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           ARELGVNFR TSGPV+AKAGDLAA+LTNLE RDVLFIDEIHRL+  VEE+LYPA+EDF+L
Sbjct: 78  ARELGVNFRMTSGPVLAKAGDLAAILTNLEKRDVLFIDEIHRLNPAVEEVLYPALEDFEL 137

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           DL++GEGP+AR+V+I L  FTL+ ATTR+GLLT PL+DRFGIP RL FY + +L  IV R
Sbjct: 138 DLVIGEGPAARTVRIELQPFTLVGATTRLGLLTTPLRDRFGIPTRLQFYTVPELHEIVTR 197

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
           GA+L G+    + A EIA R+RGTPRIAGRLLRRV DFA V    T+TR++AD AL RL 
Sbjct: 198 GARLLGVPCDADGALEIAKRARGTPRIAGRLLRRVVDFALVEGDGTLTRKLADHALTRLG 257

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D +G D  D RYL M+A N+GGGPVGIET++A LSE RDA+E++IEPY++QQG IQRTP
Sbjct: 258 VDHLGLDGADRRYLMMMAENYGGGPVGIETLAAALSESRDALEEVIEPYLLQQGLIQRTP 317

Query: 315 RGRLLMPIAWQHLGIDIP 332
           RGR L   AW HLG+  P
Sbjct: 318 RGRALGAKAWTHLGLSSP 335


>gi|86139154|ref|ZP_01057724.1| Holliday junction DNA helicase RuvB [Roseobacter sp. MED193]
 gi|85823998|gb|EAQ44203.1| Holliday junction DNA helicase RuvB [Roseobacter sp. MED193]
          Length = 343

 Score =  426 bits (1094), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 215/336 (63%), Positives = 260/336 (77%), Gaps = 3/336 (0%)

Query: 1   MMDREGLLSRNVSQEDADIS---LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M+D +  L  +   EDA       LRP+ + EF GQ EA +NL++FIE+A+ R EA+DH 
Sbjct: 1   MIDADPTLRPDPIPEDASGEGDRALRPQGISEFIGQAEARANLRIFIESARRRGEAMDHT 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           LF GPPGLGKTTLAQ+VARELGVNFR TSGPV+AKAGDLAA+LTNLE RDVLFIDEIHRL
Sbjct: 61  LFHGPPGLGKTTLAQIVARELGVNFRMTSGPVLAKAGDLAAILTNLEARDVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           + +VEEILYPA+EDF+LDL++GEGP+AR+V+I L  FTL+ ATTR+GLLT PL+DRFGIP
Sbjct: 121 NPVVEEILYPALEDFELDLVIGEGPAARTVRIELQPFTLVGATTRMGLLTTPLRDRFGIP 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            RL FY +++L  IV R A+  G     E A EIA R+RGTPRIAGRLLRRV DFA V  
Sbjct: 181 TRLQFYTVDELFEIVSRNARKLGTPADAEGAREIARRARGTPRIAGRLLRRVVDFAVVEG 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
              ITR++AD AL RL +D++G D  D RYL +IA N+ GGPVGIET+SA LSE RD++E
Sbjct: 241 DGRITRDLADGALTRLGVDRLGLDGADRRYLRLIAENYSGGPVGIETLSAALSESRDSLE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           D+IEPY++QQG IQRTPRGR+L   AW HLGI  P 
Sbjct: 301 DVIEPYLLQQGLIQRTPRGRMLAQKAWTHLGIAPPQ 336


>gi|149185529|ref|ZP_01863845.1| Holliday junction resolvasome helicase subunit [Erythrobacter sp.
           SD-21]
 gi|148830749|gb|EDL49184.1| Holliday junction resolvasome helicase subunit [Erythrobacter sp.
           SD-21]
          Length = 347

 Score =  425 bits (1093), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 211/327 (64%), Positives = 255/327 (77%), Gaps = 1/327 (0%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L S +   ED D +L RP++L EF GQ  A  NL+VFIEAAK R EA+DHVLF GPPGLG
Sbjct: 8   LHSPDRQPEDPDAAL-RPKSLAEFVGQKAARENLRVFIEAAKNRGEAMDHVLFFGPPGLG 66

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTTLAQ+V++ELGV FR+TSGPVIAKAGDLAALLTNLE  DVLFIDEIHRL+ +VEE+LY
Sbjct: 67  KTTLAQIVSKELGVGFRATSGPVIAKAGDLAALLTNLEPNDVLFIDEIHRLNPVVEEVLY 126

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           PAMED  LD+++GEGPSARSV+I+L  FTL+ ATTR GLLT PL+DRFGIP+RLNFY  +
Sbjct: 127 PAMEDRALDIIIGEGPSARSVRIDLPPFTLVGATTRQGLLTTPLRDRFGIPVRLNFYTED 186

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +L  +V RGA L G+ + +  A EIA RSRGTPR+AGRL+RRVRDFA V     +T  +A
Sbjct: 187 ELLKVVTRGAGLLGMGIDEGGAREIARRSRGTPRVAGRLMRRVRDFASVLGEPVVTTRVA 246

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           D AL RL +D +G D +D RYLTMIA  + GGPVG+ET++AGLSEPRD +E++IEPY+IQ
Sbjct: 247 DEALTRLEVDSLGLDAMDRRYLTMIATTYKGGPVGVETLAAGLSEPRDTVEEVIEPYLIQ 306

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            G I RT RGR+L    W HLG+  P 
Sbjct: 307 LGLIARTARGRMLNDGGWNHLGMRPPQ 333


>gi|294678734|ref|YP_003579349.1| holliday junction DNA helicase RuvB [Rhodobacter capsulatus SB
           1003]
 gi|294477554|gb|ADE86942.1| holliday junction DNA helicase RuvB [Rhodobacter capsulatus SB
           1003]
          Length = 345

 Score =  425 bits (1093), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 207/319 (64%), Positives = 260/319 (81%), Gaps = 1/319 (0%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           EDAD +L RP+ LEEF GQ EA +NL+VFIE+AK R +A+DH LF GPPGLGKTTLAQ++
Sbjct: 15  EDADRAL-RPQVLEEFIGQAEARANLRVFIESAKMRGQAMDHTLFHGPPGLGKTTLAQIM 73

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           ARELGVNF+ TSGPV+A+AGDLAA+LTNLE+RDVLFIDEIHR++  VEE+LYPAMEDF+L
Sbjct: 74  ARELGVNFKMTSGPVLARAGDLAAILTNLENRDVLFIDEIHRMNPAVEEVLYPAMEDFEL 133

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           DL++GEGP+AR+V+I L  FTL+ ATTR+GLLT PL+DRFGIP RL FY  ++L  IV R
Sbjct: 134 DLVIGEGPAARTVRIELQPFTLVGATTRLGLLTTPLRDRFGIPTRLQFYTEDELDLIVSR 193

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
           GA+L G+    +   EIA R+RGTPRIAGRLLRRV DFA V     +TR++AD AL RL 
Sbjct: 194 GARLLGIPADPDGTREIAKRARGTPRIAGRLLRRVVDFALVEGDGRLTRKLADNALTRLG 253

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D +G D  D RY+ ++A ++GGGPVG+ET+SA LSE RDA+E++IEPY++QQG IQRTP
Sbjct: 254 VDHLGLDGADRRYMMLMAEHYGGGPVGVETLSAALSESRDALEEVIEPYLLQQGLIQRTP 313

Query: 315 RGRLLMPIAWQHLGIDIPH 333
           RGR+L   AW+HLG++ P 
Sbjct: 314 RGRMLGHRAWRHLGLEAPQ 332


>gi|114765390|ref|ZP_01444505.1| Holliday junction DNA helicase B [Pelagibaca bermudensis HTCC2601]
 gi|114542233|gb|EAU45263.1| Holliday junction DNA helicase B [Roseovarius sp. HTCC2601]
          Length = 341

 Score =  425 bits (1092), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 212/333 (63%), Positives = 260/333 (78%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D +  L      ED D +L RP+ L +F GQ EA +NL+VFI++A+ R+EA+DH LF 
Sbjct: 1   MTDPDPTLRPEPMPEDRDRAL-RPQMLGDFVGQAEARANLRVFIQSARQRSEAMDHTLFH 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++ARELGVNFR TSGPV+AKAGDLAA+LTNLE  DVLFIDEIHRL+  
Sbjct: 60  GPPGLGKTTLAQIMARELGVNFRMTSGPVLAKAGDLAAILTNLERNDVLFIDEIHRLNAA 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMED++LDL++GEGP+AR+V+I L  FTL+ ATTR+GLLT PL+DRFGIP RL
Sbjct: 120 VEEVLYPAMEDYELDLVIGEGPAARTVRIELQPFTLVGATTRLGLLTTPLRDRFGIPTRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY +E+L +IV R A+  G+    + A EIA R+RGTPRIAGRLLRRV DFA V     
Sbjct: 180 QFYTVEELNSIVTRNAEKLGVRAEPDGAREIARRARGTPRIAGRLLRRVVDFAVVEGNGV 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +TRE+AD AL RL +D +G D  D RYL +IA ++GGGPVGIETI+A LSE RDAIE++I
Sbjct: 240 VTRELADGALTRLGVDGLGLDGADRRYLGLIAEHYGGGPVGIETIAAALSESRDAIEEVI 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY++QQG IQRTPRGR+L   AW HLG+  P 
Sbjct: 300 EPYLLQQGLIQRTPRGRMLAQRAWTHLGLAAPQ 332


>gi|300023942|ref|YP_003756553.1| Holliday junction DNA helicase RuvB [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299525763|gb|ADJ24232.1| Holliday junction DNA helicase RuvB [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 348

 Score =  424 bits (1091), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 216/334 (64%), Positives = 269/334 (80%), Gaps = 2/334 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M DR  L+S    + DA  + +RP++L+EF GQ +A +NL++FI AA+ R +ALDHVLF 
Sbjct: 1   MTDR--LVSSARKEVDAYEATIRPQSLDEFIGQEQARANLRIFITAARGRGDALDHVLFA 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++A+ELGV FR+TSGPVI+KAGDLAALLTNLE+RDVLFIDEIHRL+  
Sbjct: 59  GPPGLGKTTLAQIMAKELGVGFRATSGPVISKAGDLAALLTNLEERDVLFIDEIHRLNPA 118

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILYPAMEDFQLDLM+GEGP+ARSV+I+L +FTL+ ATTR GLLTNPL+DRFGIP+RL
Sbjct: 119 VEEILYPAMEDFQLDLMIGEGPAARSVRIDLPKFTLVGATTRAGLLTNPLRDRFGIPVRL 178

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           NFY + +L+ +V RGA++ G  +  + A EIA RSRGTPRIAGRLLRRVRDFA V  A  
Sbjct: 179 NFYSVPELELVVSRGARVLGANMASDGAREIAKRSRGTPRIAGRLLRRVRDFAAVEGAAV 238

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +   +AD AL  L +D  G D LD RYL  I +N+ GGPVGIET++A LSEPRDA+E+++
Sbjct: 239 VNAAVADRALKMLEVDGEGLDALDHRYLGCILKNYEGGPVGIETLAAALSEPRDALEEIV 298

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           EPY++QQGFI RTPRGR+L   A++HLG+  P R
Sbjct: 299 EPYLLQQGFISRTPRGRVLTLKAYRHLGVSGPAR 332


>gi|310816583|ref|YP_003964547.1| Holliday junction DNA helicase RuvB [Ketogulonicigenium vulgare
           Y25]
 gi|308755318|gb|ADO43247.1| Holliday junction DNA helicase RuvB [Ketogulonicigenium vulgare
           Y25]
          Length = 340

 Score =  424 bits (1091), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 212/332 (63%), Positives = 260/332 (78%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M++ +  L  +   ED     LRP+ L+EF GQ EA +NL++FIE+A+ R EA+DH LF 
Sbjct: 1   MIESDPTLRADPLPEDNPDRALRPQGLDEFVGQAEARANLRIFIESARRRGEAMDHTLFH 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++ARELGV FR TSGPV+AK GDLAA+LTNLE RDVLFIDEIHRLS +
Sbjct: 61  GPPGLGKTTLAQIMARELGVGFRMTSGPVLAKPGDLAAILTNLEPRDVLFIDEIHRLSPV 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDF LDL++GEGP+AR+V+I+L  FTL+ ATTR+GLLT PL+DRFGIP RL
Sbjct: 121 VEEVLYPAMEDFALDLVIGEGPAARTVRIDLQPFTLVGATTRLGLLTTPLRDRFGIPTRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY IE+L  IV+RGA+L G+   D+ A EIA R+RGTPRIAGRLLRRV DFA V     
Sbjct: 181 EFYTIEELNLIVRRGARLLGVPTDDDGAREIARRARGTPRIAGRLLRRVVDFALVEGDGR 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I+  +AD AL RL +D +G D  D RYL MI   F GGPVGIETI+A LSE RDAIE++I
Sbjct: 241 ISHALADMALTRLGVDDLGLDGADRRYLNMIGDTFAGGPVGIETIAAALSESRDAIEEVI 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EPY++QQG IQR+PRGR+L   AW+H+G++ P
Sbjct: 301 EPYLLQQGLIQRSPRGRVLTLAAWRHIGLEPP 332


>gi|146277280|ref|YP_001167439.1| Holliday junction DNA helicase RuvB [Rhodobacter sphaeroides ATCC
           17025]
 gi|166231545|sp|A4WRX0|RUVB_RHOS5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|145555521|gb|ABP70134.1| Holliday junction DNA helicase RuvB [Rhodobacter sphaeroides ATCC
           17025]
          Length = 341

 Score =  424 bits (1090), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 211/318 (66%), Positives = 256/318 (80%), Gaps = 1/318 (0%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           ED D +L RP++LEEF GQ EA +NL+VFIE+A+ R EA+DH LF GPPGLGKTTLAQ++
Sbjct: 15  EDMDRAL-RPQSLEEFVGQAEARANLRVFIESARMRGEAMDHTLFHGPPGLGKTTLAQIM 73

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           ARELGV FR TSGPV+AK GDLAA+LTNLE RDVLFIDEIHRLS +VEE+LYPA+EDF L
Sbjct: 74  ARELGVGFRMTSGPVLAKPGDLAAILTNLEPRDVLFIDEIHRLSPVVEEVLYPALEDFAL 133

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           DL++GEGP+AR+V+I L  FTL+ ATTR+GLLT PL+DRFGIP RL FY   +L  IV R
Sbjct: 134 DLVIGEGPAARTVRIELQPFTLVGATTRLGLLTTPLRDRFGIPTRLQFYTEAELTLIVAR 193

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
           GA++ G+    E   EIA R+RGTPRIAGRLLRRV DFA V     +T+ IAD AL RL 
Sbjct: 194 GARMMGVDSDPEGTQEIARRARGTPRIAGRLLRRVVDFALVEGDGRLTQAIADRALTRLG 253

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D +G D  D RYL++IA N+GGGPVGIETI+A LSE RDA+E++IEPY++QQG IQRTP
Sbjct: 254 VDHLGLDLGDRRYLSLIAENYGGGPVGIETIAAALSEARDAVEEVIEPYLLQQGLIQRTP 313

Query: 315 RGRLLMPIAWQHLGIDIP 332
           RGR+L   AW+HLG++ P
Sbjct: 314 RGRMLAHKAWRHLGLEAP 331


>gi|89053457|ref|YP_508908.1| Holliday junction DNA helicase RuvB [Jannaschia sp. CCS1]
 gi|123401320|sp|Q28TS9|RUVB_JANSC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|88863006|gb|ABD53883.1| Holliday junction DNA helicase RuvB [Jannaschia sp. CCS1]
          Length = 344

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 211/337 (62%), Positives = 264/337 (78%), Gaps = 3/337 (0%)

Query: 1   MMDREGLLSRNVSQED---ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M D +  L  +   ED    D   LRP++L++FTGQ EA +NL+VFIE+A+ R EA+DHV
Sbjct: 1   MTDSDPTLRPDRLPEDVQATDDRALRPQSLDDFTGQEEARANLRVFIESARRRGEAMDHV 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           LF GPPGLGKTTLAQ++A+ELGV FR TSGPV+AKAGDLAA+LTNLE +DVLFIDEIHRL
Sbjct: 61  LFHGPPGLGKTTLAQIMAKELGVGFRMTSGPVLAKAGDLAAILTNLEAKDVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           + +VEEILYPA+EDF+LDL++GEGP+AR+V+I L  FTL+ ATTR+GLLT PL+DRFGIP
Sbjct: 121 NPVVEEILYPALEDFELDLVIGEGPAARTVRIELQPFTLVGATTRLGLLTTPLRDRFGIP 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            RLNFY I +L  IV RGA+L G+    +   EIA R+RGTPRIAGRLLRRV DFA V  
Sbjct: 181 TRLNFYTIAELDQIVARGARLAGIEADPKGTAEIAKRARGTPRIAGRLLRRVIDFAVVEG 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
              +T+ IAD+AL RL +D +G D  D RYL++IA N+ GGPVGIET++A L+EPRDA+E
Sbjct: 241 DGRLTQGIADSALTRLGVDDLGLDGADRRYLSLIAENYHGGPVGIETVAAALAEPRDALE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           ++IEP+++QQG I RTPRGR+L    W HLG+  P R
Sbjct: 301 EVIEPFLLQQGLIARTPRGRMLAHKGWTHLGMAPPKR 337


>gi|254459640|ref|ZP_05073056.1| Holliday junction DNA helicase RuvB [Rhodobacterales bacterium
           HTCC2083]
 gi|206676229|gb|EDZ40716.1| Holliday junction DNA helicase RuvB [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 340

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 211/320 (65%), Positives = 258/320 (80%), Gaps = 1/320 (0%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           ED D +L RP+ L+EF GQ EA +NLKVFIE+AK R EA+DH LF GPPGLGKTTLAQ++
Sbjct: 14  EDNDRAL-RPQALDEFIGQAEARANLKVFIESAKRRGEAMDHTLFHGPPGLGKTTLAQIM 72

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           +RELGV+FR TSGPV+AKAGDLAA+LTNLE RDVLFIDEIHRL+ +VEEILYPA+EDF+L
Sbjct: 73  SRELGVSFRMTSGPVLAKAGDLAAILTNLEARDVLFIDEIHRLNPVVEEILYPALEDFEL 132

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           DL++GEGP+AR+V+I L  FTL+ ATTR+GLLT PL+DRFGIP RL FY  ++L TIV+R
Sbjct: 133 DLVIGEGPAARTVRIELQPFTLVGATTRLGLLTTPLRDRFGIPTRLEFYTEDELFTIVER 192

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A+  G    +  A EIA R+RGTPRIAGRLLRRV DFA V     +TR++AD AL RL 
Sbjct: 193 NARKLGTPADEGGAREIAKRARGTPRIAGRLLRRVVDFAVVEGDGRVTRDLADNALTRLG 252

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +DK+G D  D RYL +IA N+ GGPVGIET+SA LSE RDA+E++IEP+++QQG IQRTP
Sbjct: 253 VDKLGLDGADRRYLRLIAENYQGGPVGIETMSAALSESRDALEEVIEPFLLQQGLIQRTP 312

Query: 315 RGRLLMPIAWQHLGIDIPHR 334
           RGR+L   AW HLG+  P +
Sbjct: 313 RGRMLAQKAWTHLGMAAPRK 332


>gi|260428346|ref|ZP_05782325.1| holliday junction DNA helicase RuvB [Citreicella sp. SE45]
 gi|260422838|gb|EEX16089.1| holliday junction DNA helicase RuvB [Citreicella sp. SE45]
          Length = 341

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 205/311 (65%), Positives = 252/311 (81%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L++F GQ EA +NL+VFI++A++R EA+DH LF GPPGLGKTTLAQ++ARELGVN
Sbjct: 21  LRPQMLDDFVGQAEARANLRVFIQSARSRGEAMDHTLFHGPPGLGKTTLAQIMARELGVN 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           FR TSGPV+AKAGDLAA+LTNLE RDVLFIDEIHRL+  VEE+LYPAMED++LDL++GEG
Sbjct: 81  FRMTSGPVLAKAGDLAAILTNLETRDVLFIDEIHRLNPAVEEVLYPAMEDYELDLVIGEG 140

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+AR+V+I L  FTL+ ATTR+GLLT PL+DRFGIP RL FY +++L +IV R A+  G+
Sbjct: 141 PAARTVRIELQPFTLVGATTRLGLLTTPLRDRFGIPTRLQFYTVDELNSIVTRNAEKLGV 200

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
                 A EIA R+RGTPRIAGRLLRRV DFA V     +T+++AD AL RL +D MG D
Sbjct: 201 RAEPAGAREIARRARGTPRIAGRLLRRVVDFAVVEGNGVVTQQLADGALTRLGVDGMGLD 260

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             D RYL +IA ++ GGPVGIETISA LSE RDAIE++IEPY++QQG IQRTPRGR+L  
Sbjct: 261 SADRRYLRLIAEHYAGGPVGIETISAALSESRDAIEEVIEPYLLQQGLIQRTPRGRMLAQ 320

Query: 322 IAWQHLGIDIP 332
            AW HLG+  P
Sbjct: 321 RAWDHLGMPAP 331


>gi|56697947|ref|YP_168318.1| Holliday junction DNA helicase RuvB [Ruegeria pomeroyi DSS-3]
 gi|81819940|sp|Q5LNT8|RUVB_SILPO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|56679684|gb|AAV96350.1| Holliday junction DNA helicase RuvB [Ruegeria pomeroyi DSS-3]
          Length = 341

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 211/332 (63%), Positives = 261/332 (78%), Gaps = 1/332 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D +  L  +   ED D +L RP+ L+EF GQ EA +NL++F+++A+ R EA+DH LF 
Sbjct: 1   MTDADPTLRPDPLPEDNDRAL-RPQALDEFIGQAEARANLRIFVQSARQRGEAMDHTLFH 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++ARELGVNFR TSGPV+AKAGDLAA+LTNLE RDVLFIDEIHRL+  
Sbjct: 60  GPPGLGKTTLAQIMARELGVNFRMTSGPVLAKAGDLAAILTNLEARDVLFIDEIHRLNPA 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDF+LDL++G+GP+AR+V+I L  FTL+ ATTR+GLLT PL+DRFGIP RL
Sbjct: 120 VEEVLYPAMEDFELDLVIGDGPAARTVRIELQPFTLVGATTRMGLLTTPLRDRFGIPTRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY +++L  IV R A+  G    +  A EIA R+RGTPRIAGRLLRRV DFA V     
Sbjct: 180 LFYTVDELFEIVSRNARKLGAPAEEAGAREIARRARGTPRIAGRLLRRVVDFAVVEGDGR 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           ITRE+AD AL RL +D++G D  D RYL +IA N+ GGPVGIET+SA LSE RD++E++I
Sbjct: 240 ITRELADHALTRLGVDQLGLDGADRRYLRLIAENYSGGPVGIETLSAALSESRDSLEEVI 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EPY++QQG IQRTPRGR+L   AW HLG+D P
Sbjct: 300 EPYLLQQGLIQRTPRGRMLAQKAWTHLGLDAP 331


>gi|77464123|ref|YP_353627.1| Holliday junction DNA helicase RuvB [Rhodobacter sphaeroides 2.4.1]
 gi|126462966|ref|YP_001044080.1| Holliday junction DNA helicase RuvB [Rhodobacter sphaeroides ATCC
           17029]
 gi|221639990|ref|YP_002526252.1| Holliday junction DNA helicase RuvB [Rhodobacter sphaeroides KD131]
 gi|97190254|sp|Q3J0F8|RUVB_RHOS4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|166231544|sp|A3PLU2|RUVB_RHOS1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|254767437|sp|B9KKV4|RUVB_RHOSK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|77388541|gb|ABA79726.1| Holliday junction DNA helicase subunit RuvB [Rhodobacter
           sphaeroides 2.4.1]
 gi|126104630|gb|ABN77308.1| Holliday junction DNA helicase RuvB [Rhodobacter sphaeroides ATCC
           17029]
 gi|221160771|gb|ACM01751.1| Holliday junction ATP-dependent DNA helicase ruvB [Rhodobacter
           sphaeroides KD131]
          Length = 341

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 210/318 (66%), Positives = 257/318 (80%), Gaps = 1/318 (0%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           ED D +L RP++LEEF GQ EA +NL+VFIE+A+ R EA+DH LF GPPGLGKTTLAQ++
Sbjct: 15  EDMDRAL-RPQSLEEFVGQAEARANLRVFIESARMRGEAMDHTLFHGPPGLGKTTLAQIM 73

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           ARELGV FR TSGPV+AK GDLAA+LTNLE RDVLFIDEIHRLS +VEE+LYPA+EDF L
Sbjct: 74  ARELGVGFRMTSGPVLAKPGDLAAILTNLEPRDVLFIDEIHRLSPVVEEVLYPALEDFAL 133

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           DL++GEGP+AR+V+I+L  FTL+ ATTR+GLLT PL+DRFGIP RL FY  ++L  IV R
Sbjct: 134 DLVIGEGPAARTVRIDLQPFTLVGATTRLGLLTTPLRDRFGIPTRLQFYTEDELDLIVAR 193

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
           GA++ G+    E   EIA R+RGTPRIAGRLLRRV DFA V     +T+ IAD AL RL 
Sbjct: 194 GARMMGVDSDPEGTREIARRARGTPRIAGRLLRRVVDFALVEGDGRLTQAIADRALTRLG 253

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D +G D  D RY+ +IA N+GGGPVGIETI+A LSE RDA+E++IEPY++QQG IQRTP
Sbjct: 254 VDHLGLDLGDRRYIGLIAENYGGGPVGIETIAAALSESRDAVEEVIEPYLLQQGLIQRTP 313

Query: 315 RGRLLMPIAWQHLGIDIP 332
           RGR+L   AW+H+GI+ P
Sbjct: 314 RGRMLAHKAWRHMGIEPP 331


>gi|288957820|ref|YP_003448161.1| holliday junction DNA helicase [Azospirillum sp. B510]
 gi|288910128|dbj|BAI71617.1| holliday junction DNA helicase [Azospirillum sp. B510]
          Length = 362

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 203/333 (60%), Positives = 268/333 (80%), Gaps = 2/333 (0%)

Query: 3   DREG--LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           +R+G  L+       D+  + +RP +L EF GQ +A  NL +FI+AA++R EALDHVL  
Sbjct: 7   NRQGDRLVQPGQGHGDSAEASIRPLSLAEFIGQRQARENLSIFIQAARSRNEALDHVLLF 66

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ+VARELGV FR+TSGPVIA+AGDLAALLTNL+ +DVLFIDEIHRL+  
Sbjct: 67  GPPGLGKTTLAQIVARELGVGFRATSGPVIARAGDLAALLTNLQPQDVLFIDEIHRLNPA 126

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDFQLDL++GEGPSARS++I+L  FTL+ ATTR GL+T PL++RFGIP+RL
Sbjct: 127 VEEVLYPAMEDFQLDLIIGEGPSARSIRIDLPPFTLVGATTRSGLITRPLRERFGIPVRL 186

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FYE ++L+ IV+R A + G+ +T E A EIA R+RGTPR++GRLLRRVRDFA VA  + 
Sbjct: 187 QFYEPDELELIVRRAAGVLGMGITPEGAREIANRARGTPRVSGRLLRRVRDFAAVAGVEE 246

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           + + +ADAAL RL +D++G D +D RYL ++A N+GGGPVG+ET+ A L E RD +E+++
Sbjct: 247 VDKRVADAALTRLEVDRLGLDSMDRRYLGLVANNYGGGPVGVETLGAALGEQRDVLEEVV 306

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY+IQQGF+QRTPRGR+L    +++LG++ P+
Sbjct: 307 EPYLIQQGFLQRTPRGRMLTDQGFRYLGLNPPN 339


>gi|332558999|ref|ZP_08413321.1| Holliday junction DNA helicase RuvB [Rhodobacter sphaeroides WS8N]
 gi|332276711|gb|EGJ22026.1| Holliday junction DNA helicase RuvB [Rhodobacter sphaeroides WS8N]
          Length = 325

 Score =  422 bits (1084), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 207/311 (66%), Positives = 253/311 (81%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP++LEEF GQ EA +NL+VFIE+A+ R EA+DH LF GPPGLGKTTLAQ++ARELGV 
Sbjct: 5   LRPQSLEEFVGQAEARANLRVFIESARMRGEAMDHTLFHGPPGLGKTTLAQIMARELGVG 64

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           FR TSGPV+AK GDLAA+LTNLE RDVLFIDEIHRLS +VEE+LYPA+EDF LDL++GEG
Sbjct: 65  FRMTSGPVLAKPGDLAAILTNLEPRDVLFIDEIHRLSPVVEEVLYPALEDFALDLVIGEG 124

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+AR+V+I+L  FTL+ ATTR+GLLT PL+DRFGIP RL FY  ++L  IV RGA++ G+
Sbjct: 125 PAARTVRIDLQPFTLVGATTRLGLLTTPLRDRFGIPTRLQFYTEDELDLIVARGARMMGV 184

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
               E   EIA R+RGTPRIAGRLLRRV DFA V     +T+ IAD AL RL +D +G D
Sbjct: 185 DSDPEGTREIARRARGTPRIAGRLLRRVVDFALVEGDGRLTQAIADRALTRLGVDHLGLD 244

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             D RY+ +IA N+GGGPVGIETI+A LSE RDA+E++IEPY++QQG IQRTPRGR+L  
Sbjct: 245 LGDRRYIGLIAENYGGGPVGIETIAAALSESRDAVEEVIEPYLLQQGLIQRTPRGRMLAH 304

Query: 322 IAWQHLGIDIP 332
            AW+H+GI+ P
Sbjct: 305 KAWRHMGIEPP 315


>gi|126732346|ref|ZP_01748146.1| Holliday junction DNA helicase B [Sagittula stellata E-37]
 gi|126707215|gb|EBA06281.1| Holliday junction DNA helicase B [Sagittula stellata E-37]
          Length = 341

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 205/319 (64%), Positives = 257/319 (80%), Gaps = 1/319 (0%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           ED D +L RP+ L +F GQ EA +NL+VFIE+A++R EA+DH LF GPPGLGKTTLAQ++
Sbjct: 14  EDRDRAL-RPQMLADFVGQAEARANLRVFIESARSRGEAMDHTLFHGPPGLGKTTLAQIM 72

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           ARELGV FR TSGPV+AKAGDLAA+LTNLE RDVLFIDEIHR+S  VEE+LYPAMED++L
Sbjct: 73  ARELGVGFRMTSGPVLAKAGDLAAILTNLEARDVLFIDEIHRMSAAVEEVLYPAMEDYEL 132

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           DL++GEGP+AR+V+I L  FTL+ ATTR+GLLT PL+DRFGIP RLNFY +++L+TIV  
Sbjct: 133 DLVIGEGPAARTVRIELQPFTLVGATTRLGLLTTPLRDRFGIPTRLNFYTVDELETIVAG 192

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A+  G+ V    A EIA R+RGTPRIAGRLLRRV DFA V     +T+ +AD++L RL 
Sbjct: 193 NARKLGVRVEGSGAREIARRARGTPRIAGRLLRRVVDFAVVEGGGVVTQALADSSLTRLG 252

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D  G D  D RYL +IA+++GGGPVGIET+SA LSE RDA+E+++EPY++QQG IQRTP
Sbjct: 253 VDARGLDGADRRYLELIAQSYGGGPVGIETLSAALSESRDALEEVVEPYLLQQGLIQRTP 312

Query: 315 RGRLLMPIAWQHLGIDIPH 333
           RGR+L   AW H+G+  P 
Sbjct: 313 RGRMLTQSAWTHIGLAPPR 331


>gi|85709395|ref|ZP_01040460.1| Holliday junction resolvasome helicase subunit [Erythrobacter sp.
           NAP1]
 gi|85688105|gb|EAQ28109.1| Holliday junction resolvasome helicase subunit [Erythrobacter sp.
           NAP1]
          Length = 347

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 208/313 (66%), Positives = 249/313 (79%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           + LRP+ L EF GQ  A  NL+VFI++A+AR EA+DH LF GPPGLGKTTLAQ+VA ELG
Sbjct: 20  TALRPKRLAEFIGQEAAKDNLRVFIDSARARGEAMDHTLFHGPPGLGKTTLAQIVAGELG 79

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
           V FR+TSGPVIAKAGDLAALLTNLE  DVLFIDEIHRL+ +VEE+LYPAMED  LD+++G
Sbjct: 80  VGFRATSGPVIAKAGDLAALLTNLEPHDVLFIDEIHRLNPVVEEVLYPAMEDRALDIIIG 139

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199
           EGPSARSV+I+L  FTL+ ATTR GLLT PL+DRFGIP+RL FY  ++L  +V RGA+L 
Sbjct: 140 EGPSARSVRIDLPPFTLVGATTRQGLLTTPLRDRFGIPVRLQFYTHDELDQVVTRGARLL 199

Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259
           GL +    A EIA RSRGTPR+AGRLLRRVRDFA+VA   T+TR +AD AL RL ID++G
Sbjct: 200 GLDIEASGAREIARRSRGTPRVAGRLLRRVRDFAQVAGQVTVTRAMADDALTRLEIDRLG 259

Query: 260 FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLL 319
            D +D RYLTMIA  + GGPVG+  ISAGLSE RD +E++IEPY+IQ G I RT RGR+L
Sbjct: 260 LDAMDRRYLTMIAETYKGGPVGVAAISAGLSEQRDTVEEVIEPYLIQLGLIARTERGRML 319

Query: 320 MPIAWQHLGIDIP 332
               W+HLG+  P
Sbjct: 320 NDAGWEHLGVAKP 332


>gi|58040114|ref|YP_192078.1| Holliday junction DNA helicase RuvB [Gluconobacter oxydans 621H]
 gi|81819055|sp|Q5FQC4|RUVB_GLUOX RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|58002528|gb|AAW61422.1| Holliday junction DNA helicase RuvB [Gluconobacter oxydans 621H]
          Length = 349

 Score =  418 bits (1074), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 208/318 (65%), Positives = 252/318 (79%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           ED     LRP TL +FTGQ  +  NL +FIEAA+AR EALDHVL  GPPGLGKTTLAQ+V
Sbjct: 15  EDMGEGSLRPETLADFTGQKASRENLAIFIEAARARNEALDHVLLHGPPGLGKTTLAQIV 74

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           ARELGV FR+TSGPVI +AGDLAA+LTNL+ RDVLFIDEIHRL   +EE+LYPAMEDFQL
Sbjct: 75  ARELGVGFRATSGPVIQRAGDLAAILTNLQPRDVLFIDEIHRLQPAIEEVLYPAMEDFQL 134

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           DL++GEGP+ARSV+I+L+ FTL+AATTR GLL  PL+DRFGIP+RL FY  E+L+ IV R
Sbjct: 135 DLIIGEGPAARSVRIDLAPFTLVAATTRAGLLATPLRDRFGIPLRLVFYTPEELRAIVSR 194

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
           GA   G+ +TD+ A EIA RSRGTPRIAGRLLRRVRDFA V+    + R +ADAAL RL 
Sbjct: 195 GALKLGMRLTDDGAEEIARRSRGTPRIAGRLLRRVRDFALVSKHAVVDRALADAALGRLE 254

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D+ G D +D RYL  IA +  GGPVG+ET++AGL+E RD +ED+IEPY+IQ+G + RT 
Sbjct: 255 VDERGLDAMDRRYLKRIAEHHHGGPVGVETLAAGLAEARDTLEDVIEPYLIQEGLVLRTA 314

Query: 315 RGRLLMPIAWQHLGIDIP 332
           RGR+L    W+HLG+  P
Sbjct: 315 RGRMLGEAGWRHLGLTPP 332


>gi|83954485|ref|ZP_00963196.1| Holliday junction DNA helicase RuvB [Sulfitobacter sp. NAS-14.1]
 gi|83840769|gb|EAP79940.1| Holliday junction DNA helicase RuvB [Sulfitobacter sp. NAS-14.1]
          Length = 339

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 212/333 (63%), Positives = 257/333 (77%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M+D +  L  +    D D +L RP+ L+EF GQ EA +NLKVFI++AK R EA+DH LF 
Sbjct: 1   MIDSDPTLRPDPQPGDIDRAL-RPQMLDEFVGQAEARANLKVFIQSAKQRGEAMDHTLFH 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++ARELGV FR TSGPV+AKAGDLAA+LTNLE RDVLFIDEIHRL+  
Sbjct: 60  GPPGLGKTTLAQIMARELGVGFRMTSGPVLAKAGDLAAILTNLEARDVLFIDEIHRLNPA 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPA+EDF+LDL++GEGP+AR+V+I L  FTL+ ATTR+GLLT PL+DRFGIP RL
Sbjct: 120 VEEVLYPALEDFELDLVIGEGPAARTVRIELQPFTLVGATTRMGLLTTPLRDRFGIPTRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  ++L  IV R A+  G    +  A EIA R+RGTPRIAGRLLRRV DFA V     
Sbjct: 180 QFYTEDELFIIVDRNARKLGAPADEGGAREIAKRARGTPRIAGRLLRRVVDFAVVEGDGR 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +TR +AD AL RL +DK+G D  D RYL +IA N+ GGPVGIET+SA LSE RDA+E++I
Sbjct: 240 VTRALADMALTRLGVDKLGLDGADRRYLRLIAENYQGGPVGIETMSAALSESRDALEEVI 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY++QQG IQRTPRGR+L   AW HLG+  P 
Sbjct: 300 EPYLLQQGLIQRTPRGRMLAQKAWTHLGMAPPK 332


>gi|83943912|ref|ZP_00956369.1| Holliday junction DNA helicase RuvB [Sulfitobacter sp. EE-36]
 gi|83845159|gb|EAP83039.1| Holliday junction DNA helicase RuvB [Sulfitobacter sp. EE-36]
          Length = 344

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 212/333 (63%), Positives = 257/333 (77%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M+D +  L  +    D D +L RP+ L+EF GQ EA +NLKVFI++AK R EA+DH LF 
Sbjct: 6   MIDSDPTLRPDPQPGDIDRAL-RPQMLDEFVGQAEARANLKVFIQSAKQRGEAMDHTLFH 64

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++ARELGV FR TSGPV+AKAGDLAA+LTNLE RDVLFIDEIHRL+  
Sbjct: 65  GPPGLGKTTLAQIMARELGVGFRMTSGPVLAKAGDLAAILTNLEARDVLFIDEIHRLNPA 124

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPA+EDF+LDL++GEGP+AR+V+I L  FTL+ ATTR+GLLT PL+DRFGIP RL
Sbjct: 125 VEEVLYPALEDFELDLVIGEGPAARTVRIELQPFTLVGATTRMGLLTTPLRDRFGIPTRL 184

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  ++L  IV R A+  G    +  A EIA R+RGTPRIAGRLLRRV DFA V     
Sbjct: 185 QFYTEDELFIIVDRNARKLGAPADEGGAREIAKRARGTPRIAGRLLRRVVDFALVEGDGR 244

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +TR +AD AL RL +DK+G D  D RYL +IA N+ GGPVGIET+SA LSE RDA+E++I
Sbjct: 245 VTRALADMALTRLGVDKLGLDGADRRYLRLIAENYQGGPVGIETMSAALSESRDALEEVI 304

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY++QQG IQRTPRGR+L   AW HLG+  P 
Sbjct: 305 EPYLLQQGLIQRTPRGRMLAQKAWTHLGMAPPK 337


>gi|254487635|ref|ZP_05100840.1| Holliday junction DNA helicase RuvB [Roseobacter sp. GAI101]
 gi|214044504|gb|EEB85142.1| Holliday junction DNA helicase RuvB [Roseobacter sp. GAI101]
          Length = 339

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 208/312 (66%), Positives = 248/312 (79%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L+EF GQ EA SNLKVFI++AK R EA+DH LF GPPGLGKTTLAQ++ARELGV 
Sbjct: 21  LRPQLLDEFVGQAEARSNLKVFIQSAKQRGEAMDHTLFHGPPGLGKTTLAQIMARELGVG 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           FR TSGPV+AKAGDLAA+LTNLE RDVLFIDEIHRL+  VEE+LYPA+EDF+LDL++GEG
Sbjct: 81  FRMTSGPVLAKAGDLAAILTNLEARDVLFIDEIHRLNPAVEEVLYPALEDFELDLVIGEG 140

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+AR+V+I L  FTL+ ATTR+GLLT PL+DRFGIP RL FY  ++L  IV R A+  G 
Sbjct: 141 PAARTVRIELQPFTLVGATTRMGLLTTPLRDRFGIPTRLQFYTEDELFIIVDRNARKLGA 200

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
              +  A EIA R+RGTPRIAGRLLRRV DFA V     +TRE+AD AL RL +D +G D
Sbjct: 201 PADEGGAREIAKRARGTPRIAGRLLRRVVDFAVVEGDGRVTRELADMALTRLGVDYLGLD 260

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             D RYL MIA N+ GGPVGIET+SA LSE RDA+E++IEP+++QQG IQRTPRGR+L  
Sbjct: 261 GADRRYLRMIAENYQGGPVGIETMSAALSESRDALEEVIEPFLLQQGLIQRTPRGRMLAQ 320

Query: 322 IAWQHLGIDIPH 333
            AW HLG+  P 
Sbjct: 321 KAWTHLGMAPPK 332


>gi|307294739|ref|ZP_07574581.1| Holliday junction DNA helicase RuvB [Sphingobium chlorophenolicum
           L-1]
 gi|306879213|gb|EFN10431.1| Holliday junction DNA helicase RuvB [Sphingobium chlorophenolicum
           L-1]
          Length = 339

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 215/331 (64%), Positives = 262/331 (79%), Gaps = 1/331 (0%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M  + L+S     ED D +L RP++L EF GQ  A  NL++FIEAAK R EALDHVLF G
Sbjct: 1   MSEDRLISSTRRVEDVDAAL-RPKSLAEFIGQQAARENLRIFIEAAKGRGEALDHVLFFG 59

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLAQ+VARE+GV FR+TSGPVIAK+GDLAALLTNL++ DVLF+DEIHRL+  V
Sbjct: 60  PPGLGKTTLAQIVAREMGVGFRATSGPVIAKSGDLAALLTNLDEGDVLFVDEIHRLNPAV 119

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMED  LDLM+GEGPSARSV+I+L  FTL+ ATTR GLLT PL+DRFGIP+RL 
Sbjct: 120 EEVLYPAMEDRALDLMIGEGPSARSVRIDLPPFTLVGATTRQGLLTTPLRDRFGIPVRLQ 179

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY +++L+ +V+R A+L  LA+T + A EIA RSRGTPRIAGRLLRRVRDFA VA A  +
Sbjct: 180 FYTVDELELVVRRAARLLDLAITSDGAVEIARRSRGTPRIAGRLLRRVRDFANVAGAPAV 239

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
             ++ADAAL RL +D +G D +D RYL MIA  + GGPVG+ET++AGLSE RD IE++IE
Sbjct: 240 DAKVADAALTRLEVDHLGLDLMDRRYLMMIADIYRGGPVGVETLAAGLSEARDTIEEVIE 299

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           PY+IQ G I RT RGR L    W+HLG++ P
Sbjct: 300 PYLIQLGLIARTARGRCLNGPGWKHLGLNPP 330


>gi|91205749|ref|YP_538104.1| Holliday junction DNA helicase B [Rickettsia bellii RML369-C]
 gi|157827124|ref|YP_001496188.1| Holliday junction DNA helicase RuvB [Rickettsia bellii OSU 85-389]
 gi|123388109|sp|Q1RHZ9|RUVB_RICBR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|166231547|sp|A8GWC4|RUVB_RICB8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|91069293|gb|ABE05015.1| Holliday junction DNA helicase RuvB [Rickettsia bellii RML369-C]
 gi|157802428|gb|ABV79151.1| Holliday junction DNA helicase B [Rickettsia bellii OSU 85-389]
          Length = 342

 Score =  416 bits (1069), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 204/327 (62%), Positives = 253/327 (77%), Gaps = 1/327 (0%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            +LS   SQ D ++ L RP  L+EF GQ +   NL VFI AAK+R E LDH LF GPPGL
Sbjct: 3   SILSPEKSQNDQELPL-RPSYLQEFVGQQQIKENLSVFIRAAKSRGEHLDHTLFYGPPGL 61

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLA++++ E+G NF+STSGP I KA DLAA+LTNLE  DVLFIDEIHRL+  VEE+L
Sbjct: 62  GKTTLAKIISNEIGGNFKSTSGPAILKAADLAAILTNLEKNDVLFIDEIHRLNTSVEEVL 121

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           YPAMEDF+LD+++GEGP+ARSVKINL +FTLI ATTR+GLL+NPL+DRFGIP+RLNFY  
Sbjct: 122 YPAMEDFELDIIIGEGPAARSVKINLPQFTLIGATTRLGLLSNPLRDRFGIPMRLNFYNT 181

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           E+LK ++ R +KL  + +TD  + EIA RSRGTPRIA RLLRR+RDFA V +   I +EI
Sbjct: 182 EELKKVLNRASKLLDIDLTDSGSEEIARRSRGTPRIALRLLRRIRDFAAVNNQLEIDKEI 241

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           A+  L RL +D +G D  D RYL  IA N+ GGPVGIETI+A LSE RDA+E+ IEPY+I
Sbjct: 242 ANFGLNRLEVDIIGLDSNDYRYLKFIADNYNGGPVGIETIAAALSEQRDALEETIEPYLI 301

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           Q G +QRTPRGR++   A++HL I +P
Sbjct: 302 QIGLLQRTPRGRVITATAFEHLKIPLP 328


>gi|294010087|ref|YP_003543547.1| Holliday junction resolvasome helicase subunit [Sphingobium
           japonicum UT26S]
 gi|292673417|dbj|BAI94935.1| Holliday junction resolvasome helicase subunit [Sphingobium
           japonicum UT26S]
          Length = 339

 Score =  416 bits (1068), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/331 (65%), Positives = 265/331 (80%), Gaps = 1/331 (0%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M  + L+S     EDAD +L RP++L EF GQ  A  NL++FIEAAK R EALDHVLF G
Sbjct: 1   MSEDRLISSTRRVEDADAAL-RPKSLAEFIGQQAARENLRIFIEAAKGRGEALDHVLFFG 59

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLAQ+VARE+GV FR+TSGPVIAK+GDLAALLTNL++ DVLF+DEIHRL+  V
Sbjct: 60  PPGLGKTTLAQIVAREMGVGFRATSGPVIAKSGDLAALLTNLDEGDVLFVDEIHRLNPAV 119

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMED  LDLM+GEGPSARSV+I+L  FTL+ ATTR GLLT PL+DRFGIP+RL 
Sbjct: 120 EEVLYPAMEDRALDLMIGEGPSARSVRIDLPPFTLVGATTRQGLLTTPLRDRFGIPVRLQ 179

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY +++L+ +V+R A+L  LA+T + A EIA RSRGTPRIAGRLLRRVRDFA VA A  +
Sbjct: 180 FYTVDELELVVRRAARLLDLAITSDGAVEIARRSRGTPRIAGRLLRRVRDFANVAGAAAV 239

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
             ++ADAAL RL +D +G D +D RYLTMIA  + GGPVG+ET++AGLSE RD IE++IE
Sbjct: 240 DAKVADAALTRLEVDHLGLDLMDRRYLTMIADIYRGGPVGVETLAAGLSEARDTIEEVIE 299

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           PY+IQ G I RT RGR L  + W+HLG++ P
Sbjct: 300 PYLIQLGLIARTARGRCLNALGWKHLGLNPP 330


>gi|296535991|ref|ZP_06898135.1| crossover junction ATP-dependent DNA helicase RuvB [Roseomonas
           cervicalis ATCC 49957]
 gi|296263677|gb|EFH10158.1| crossover junction ATP-dependent DNA helicase RuvB [Roseomonas
           cervicalis ATCC 49957]
          Length = 342

 Score =  415 bits (1067), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 205/320 (64%), Positives = 256/320 (80%), Gaps = 1/320 (0%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           S+EDA  + LRP+TL++FTGQ     NL +FI+AA+ R EALDHVL  GPPGLGKTTLAQ
Sbjct: 11  SEEDAAEATLRPQTLDDFTGQKALRENLAIFIQAARTRGEALDHVLLHGPPGLGKTTLAQ 70

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           +VARE+GV FR+TSGPV+ +AGDLAA+LTNL+ RDVLF+DEIHRL   +EE LYPAMEDF
Sbjct: 71  IVAREMGVGFRATSGPVLQRAGDLAAILTNLQPRDVLFVDEIHRLQPALEETLYPAMEDF 130

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           QLDL++GEGP+AR+V+I+L  FTL+ ATTR GLL  PL+DRFGIP+RL FY  E+L  IV
Sbjct: 131 QLDLIIGEGPAARTVRIDLPPFTLVGATTRAGLLATPLRDRFGIPLRLQFYTPEELLLIV 190

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           +RGA+  G A+T+E A EIA RSRGTPRIAGRLLRRVRDFA V+  K   R +ADAAL R
Sbjct: 191 RRGAQKLGFALTEEGAAEIANRSRGTPRIAGRLLRRVRDFALVS-GKPADRAMADAALNR 249

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D  G D +D RYL  IA +  GGPVG+ET++A L+E RD +E+++EPY+IQ+GF+ R
Sbjct: 250 LEVDGKGLDAMDRRYLRRIAEHHHGGPVGVETLAAALAEGRDTLEEVVEPYLIQEGFVLR 309

Query: 313 TPRGRLLMPIAWQHLGIDIP 332
           TPRGR+L  +AW+HLG+  P
Sbjct: 310 TPRGRVLGDLAWRHLGMSPP 329


>gi|157803863|ref|YP_001492412.1| Holliday junction DNA helicase RuvB [Rickettsia canadensis str.
           McKiel]
 gi|166231548|sp|A8EZ44|RUVB_RICCK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|157785126|gb|ABV73627.1| Holliday junction DNA helicase RuvB [Rickettsia canadensis str.
           McKiel]
          Length = 342

 Score =  415 bits (1067), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 201/329 (61%), Positives = 255/329 (77%), Gaps = 1/329 (0%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            +LS   S+ D ++ + RP  L+EF GQ +   NL VFI+AAK+R E LDH LF GPPGL
Sbjct: 3   NILSPEKSENDQELPI-RPSYLQEFVGQQQIKENLLVFIKAAKSRNEHLDHTLFYGPPGL 61

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLA++V+ E+GVNF+STSGP I KA DLAA+LTNLE  DVLFIDEIHRL+  VEE+L
Sbjct: 62  GKTTLAKIVSNEIGVNFKSTSGPAILKAADLAAILTNLEKNDVLFIDEIHRLNTSVEEVL 121

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           YPAMEDF+LD+++GEGP+ARSVKINL  FTLI ATTR+GLL+NPL+DRFGIP+RLNFY  
Sbjct: 122 YPAMEDFELDIIIGEGPAARSVKINLPHFTLIGATTRLGLLSNPLRDRFGIPMRLNFYNN 181

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           ++LK ++ R +KL  + +T+  + EIA RSRGTPRIA RLLRR+RDFA V     + +EI
Sbjct: 182 DELKKVLNRASKLLDIDLTESGSEEIAKRSRGTPRIALRLLRRIRDFAVVDSKSVVDKEI 241

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           AD  L RL +D +G D  D RYL  IA N+ GGPVGIETI+A LSE RDA+E+ IEPY+I
Sbjct: 242 ADFGLNRLEVDHIGLDSNDYRYLKFIAANYNGGPVGIETIAAALSEQRDALEETIEPYLI 301

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           Q G +QRTPRGR++   A++HL + +P++
Sbjct: 302 QIGLLQRTPRGRVITIAAFEHLKMPVPNK 330


>gi|85703559|ref|ZP_01034663.1| Holliday junction DNA helicase RuvB [Roseovarius sp. 217]
 gi|85672487|gb|EAQ27344.1| Holliday junction DNA helicase RuvB [Roseovarius sp. 217]
          Length = 344

 Score =  415 bits (1066), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 207/318 (65%), Positives = 250/318 (78%), Gaps = 1/318 (0%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           ED D SL RP+ L EF GQ EA +NL VFI++A+ R +A+DH LF GPPGLGKTTLAQ++
Sbjct: 15  EDQDRSL-RPQALSEFIGQKEARANLAVFIQSARQRGDAMDHTLFHGPPGLGKTTLAQIM 73

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           ARELGV FR TSGPV+AKAGDLAA+LTNLE  DVLFIDEIHRL+  VEE+LYPAMEDF+L
Sbjct: 74  ARELGVGFRMTSGPVLAKAGDLAAILTNLERNDVLFIDEIHRLNPAVEEVLYPAMEDFEL 133

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           DL++GEGP+AR+V+I L  FTL+ ATTR+GLLT PL+DRFGIP RL FYEI++L  IV R
Sbjct: 134 DLVIGEGPAARTVRIELQPFTLVGATTRLGLLTTPLRDRFGIPTRLQFYEIDELHEIVTR 193

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            AKL  +    E A EIA R+RGTPRIAGRLLRRV DFA V     I+R +AD++L RL 
Sbjct: 194 NAKLLNIPTDTEGAREIARRARGTPRIAGRLLRRVVDFAVVEGGGKISRALADSSLTRLG 253

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D +G D  D RYL +IA  + GGPVGIET+SA LSE RDA+E++IEP+++QQG IQRTP
Sbjct: 254 VDHLGLDGADRRYLRLIAEAYQGGPVGIETLSAALSESRDALEEVIEPFLLQQGLIQRTP 313

Query: 315 RGRLLMPIAWQHLGIDIP 332
           RGR+L    W HLG+  P
Sbjct: 314 RGRMLAQGGWAHLGLAAP 331


>gi|110679370|ref|YP_682377.1| Holliday junction DNA helicase RuvB [Roseobacter denitrificans OCh
           114]
 gi|123361966|sp|Q168A2|RUVB_ROSDO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|109455486|gb|ABG31691.1| Holliday junction DNA helicase RuvB [Roseobacter denitrificans OCh
           114]
          Length = 340

 Score =  415 bits (1066), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 208/318 (65%), Positives = 250/318 (78%), Gaps = 1/318 (0%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           ED D +L RP+ L EF GQ EA +NLKVFI +A+ R EA+DH LF GPPGLGKTTLAQ++
Sbjct: 15  EDHDRAL-RPQMLSEFVGQAEARANLKVFIASARQRGEAMDHTLFHGPPGLGKTTLAQIM 73

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           ARELGV FR TSGPV+AKAGDLAA+LTNLE RDVLFIDEIHRL+  VEE+LYPA+EDF+L
Sbjct: 74  ARELGVGFRMTSGPVLAKAGDLAAILTNLEKRDVLFIDEIHRLNPAVEEVLYPALEDFEL 133

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           DL++GEGP+AR+V+I L  FTL+ ATTR+GLLT PL+DRFGIP RL FY  ++L  IV R
Sbjct: 134 DLVIGEGPAARTVRIELQPFTLVGATTRMGLLTTPLRDRFGIPTRLQFYTEDELFIIVDR 193

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A+  G    +  A EIA R+RGTPRIAGRLLRRV DFA V     +TR +AD AL RL 
Sbjct: 194 NARKLGAPADEGGAREIARRARGTPRIAGRLLRRVVDFAVVEGDGRVTRALADMALNRLG 253

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D +G D  D RYL +IA N+GGGPVGIET+SA LSE RDA+E++IEP+++QQG IQRTP
Sbjct: 254 VDHLGLDGADRRYLRLIAENYGGGPVGIETMSAALSESRDALEEVIEPFLLQQGLIQRTP 313

Query: 315 RGRLLMPIAWQHLGIDIP 332
           RGR+L    W HLG+D P
Sbjct: 314 RGRMLAQKGWTHLGLDAP 331


>gi|16127466|ref|NP_422030.1| Holliday junction DNA helicase B [Caulobacter crescentus CB15]
 gi|221236279|ref|YP_002518716.1| Holliday junction DNA helicase RuvB [Caulobacter crescentus NA1000]
 gi|20140205|sp|Q9A3G8|RUVB_CAUCR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|254767417|sp|B8H454|RUVB_CAUCN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|13424920|gb|AAK25198.1| Holliday junction DNA helicase RuvB [Caulobacter crescentus CB15]
 gi|220965452|gb|ACL96808.1| Holliday junction DNA helicase ruvB [Caulobacter crescentus NA1000]
          Length = 346

 Score =  415 bits (1066), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 205/311 (65%), Positives = 246/311 (79%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+TL EF GQ +A  NL+VFIEAAK R EALDHVL  GPPGLGKTTLAQ+VARELGVN
Sbjct: 21  LRPQTLAEFVGQEQAKGNLRVFIEAAKGRGEALDHVLLFGPPGLGKTTLAQIVARELGVN 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           FR+TSGPV+ K GDLAA+LTNLE  DVLFIDEIHRLS  VEEILYPAMED  LDL++GEG
Sbjct: 81  FRATSGPVLNKPGDLAAILTNLEANDVLFIDEIHRLSSNVEEILYPAMEDHVLDLVIGEG 140

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSARS++I+L+ FTL+AATTR G+L  PL+DRFGIPIRL FY   +L+ ++Q  A+  G 
Sbjct: 141 PSARSIRIDLAPFTLVAATTRAGMLATPLRDRFGIPIRLEFYTPAELRHVLQHAARKMGA 200

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +TD+ A EIA R+RGTPR+AGRLLRRVRDFA    A  I R+ A  AL RL +D+ G D
Sbjct: 201 PLTDDGADEIAKRARGTPRVAGRLLRRVRDFATADGADRIDRKAAAMALARLEVDESGLD 260

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            LD RYL  +  N+GGGPVG+ETI+  ++E RDA+ED+IEPY++QQGFIQRTPRGR+   
Sbjct: 261 SLDRRYLRAMIENYGGGPVGVETIAYAIAEARDAVEDVIEPYLMQQGFIQRTPRGRMACG 320

Query: 322 IAWQHLGIDIP 332
            A+ HLG+  P
Sbjct: 321 KAYLHLGLTPP 331


>gi|260576654|ref|ZP_05844641.1| Holliday junction DNA helicase RuvB [Rhodobacter sp. SW2]
 gi|259021139|gb|EEW24448.1| Holliday junction DNA helicase RuvB [Rhodobacter sp. SW2]
          Length = 344

 Score =  414 bits (1065), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 205/333 (61%), Positives = 259/333 (77%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M     L    + ++ AD+   LRP+ L +F GQ EA +NL+VFI++AK R EA+DH LF
Sbjct: 1   MTSNPTLRPEKLPEDAADLDRALRPQMLADFVGQAEARANLRVFIDSAKMRGEAMDHTLF 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLAQ++ARELGV FR TSGPV+A+AGDLAA+LTNLE RDVLFIDEIHRLS 
Sbjct: 61  HGPPGLGKTTLAQIMARELGVGFRMTSGPVLARAGDLAAILTNLEPRDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPA+EDF LDL++GEGP+AR+V+I+L  FTL+ ATTR+GLLT PL+DRFGIP R
Sbjct: 121 VVEEVLYPALEDFALDLVIGEGPAARTVRIDLQPFTLVGATTRLGLLTTPLRDRFGIPTR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY  ++L  IV RGA+L G+    +   EIA R+RGTPRIAGRLLRRV DF  V    
Sbjct: 181 LQFYTEDELDLIVTRGARLLGIPADPDGTREIARRARGTPRIAGRLLRRVVDFVLVEGDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            +T+ IAD AL RL +D +G D  D RY++++A N+GGGPVG+ETI A LSE RD+IE++
Sbjct: 241 RLTQAIADRALTRLGVDHLGLDGADRRYMSLLADNYGGGPVGVETIGAALSESRDSIEEV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           IEP+++QQG IQRTPRGR+L   AW+HLG++ P
Sbjct: 301 IEPFLLQQGLIQRTPRGRMLAAKAWRHLGLEAP 333


>gi|238020684|ref|ZP_04601110.1| hypothetical protein GCWU000324_00574 [Kingella oralis ATCC 51147]
 gi|237867664|gb|EEP68670.1| hypothetical protein GCWU000324_00574 [Kingella oralis ATCC 51147]
          Length = 343

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 205/325 (63%), Positives = 250/325 (76%), Gaps = 1/325 (0%)

Query: 9   SRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           ++N+S QE+     LRP+TL ++ GQ +A   L +FI AAK R+EALDH L  GPPGLGK
Sbjct: 18  AQNLSAQEEQLERALRPKTLADYIGQHKAKEQLAIFIAAAKKRSEALDHSLLFGPPGLGK 77

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127
           TTLA ++ARELGVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VEEILYP
Sbjct: 78  TTLANIIARELGVNLRQTSGPVLERAGDLAALLTNLEPHDVLFIDEIHRLSPVVEEILYP 137

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           AMED+QLD+M+GEGP+ARSVKI+L  FTLI ATTR G+LTNPL+DRFGI  RL FYE  D
Sbjct: 138 AMEDYQLDIMIGEGPAARSVKIDLPPFTLIGATTRAGMLTNPLRDRFGIVARLEFYETRD 197

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           L TIV R A+L G+ + +  A EIA RSRGTPRIA RLLRRVRD+AEV H  +IT  IAD
Sbjct: 198 LATIVARSAQLLGMDLDEHGALEIARRSRGTPRIANRLLRRVRDYAEVKHTGSITAPIAD 257

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           AAL  L +DK+G D +D ++L  +   F GGPVG++ I+A + E  D IED+IEPY+IQQ
Sbjct: 258 AALSMLDVDKIGLDMMDRKFLEAVLHKFSGGPVGLDNIAAAIGESTDTIEDVIEPYLIQQ 317

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIP 332
           GF+QRTPRGR+    A++H G+  P
Sbjct: 318 GFLQRTPRGRMATAGAFEHFGLTAP 342


>gi|114800414|ref|YP_758881.1| Holliday junction DNA helicase RuvB [Hyphomonas neptunium ATCC
           15444]
 gi|123028468|sp|Q0C5W2|RUVB_HYPNA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|114740588|gb|ABI78713.1| Holliday junction DNA helicase RuvB [Hyphomonas neptunium ATCC
           15444]
          Length = 344

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 206/333 (61%), Positives = 258/333 (77%), Gaps = 2/333 (0%)

Query: 2   MDREGLLSR-NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M REG LS  N    DA    LRP+T E++ GQ +A +NLKV++EAA+ R EALDHVL  
Sbjct: 1   MSREGALSDPNAQGGDALDRALRPQTFEDYVGQRKAKANLKVYVEAARGRKEALDHVLLF 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++ARE+GV FR+TSGPVIAKAGDLAA+LTNLE  DVLFIDEIHRL  I
Sbjct: 61  GPPGLGKTTLAQILAREMGVGFRATSGPVIAKAGDLAAILTNLEPNDVLFIDEIHRLPAI 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILYPAMED+ LDL++GEGP+ARSV+++L+ FTL+ ATTR GLL  PL+DRFGIP+RL
Sbjct: 121 VEEILYPAMEDYALDLVIGEGPAARSVRLDLAPFTLVGATTRAGLLATPLRDRFGIPVRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FYE E+L  IV   A+  G+ +T++ A EI+ R+RGTPRIA RLLRRVRDFAE A    
Sbjct: 181 EFYEPEELGRIVMAAARKLGVPITEDGAVEISARARGTPRIALRLLRRVRDFAE-AEGAD 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I R  A  AL RL ID+ G D LD RYL  + + + GGPVG +T++A LSE RDA+ED+I
Sbjct: 240 INRASAARALKRLEIDEDGLDALDRRYLHALVKTYAGGPVGADTLAAALSEARDAVEDVI 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY++Q+G++ RTPRGR+  P+A++ LG+  P+
Sbjct: 300 EPYLMQKGYVARTPRGRVAAPLAYERLGLKAPN 332


>gi|163733515|ref|ZP_02140958.1| Holliday junction DNA helicase B [Roseobacter litoralis Och 149]
 gi|161393303|gb|EDQ17629.1| Holliday junction DNA helicase B [Roseobacter litoralis Och 149]
          Length = 340

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 206/318 (64%), Positives = 250/318 (78%), Gaps = 1/318 (0%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           ED D +L RP+ L+EF GQ +  +NLKVFI +A+ R EA+DH LF GPPGLGKTTLAQ++
Sbjct: 15  EDHDRAL-RPQVLDEFVGQADVRANLKVFIASARQRGEAMDHTLFHGPPGLGKTTLAQIM 73

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           ARELGV FR TSGPV+AKAGDLAA+LTNLE RDVLFIDEIHRL+  VEE+LYPA+EDF+L
Sbjct: 74  ARELGVGFRMTSGPVLAKAGDLAAILTNLEKRDVLFIDEIHRLNPAVEEVLYPALEDFEL 133

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           DL++GEGP+AR+V+I L  FTL+ ATTR+GLLT PL+DRFGIP RL FY  ++L  IV+R
Sbjct: 134 DLVIGEGPAARTVRIELQPFTLVGATTRMGLLTTPLRDRFGIPTRLQFYTEDELFIIVER 193

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A+  G       A EIA R+RGTPRIAGRLLRRV DFA V     +TRE+AD AL RL 
Sbjct: 194 NARKLGAPADQGGAREIARRARGTPRIAGRLLRRVVDFAVVEGDGRVTRELADMALNRLG 253

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D +G D  D RYL +IA N+ GGPVGIET+SA LSE RDA+E++IEP+++QQG IQRTP
Sbjct: 254 VDHLGLDGADRRYLRLIAENYAGGPVGIETMSAALSESRDALEEVIEPFLLQQGLIQRTP 313

Query: 315 RGRLLMPIAWQHLGIDIP 332
           RGR+L    W HLG+D P
Sbjct: 314 RGRMLAQKGWTHLGLDAP 331


>gi|46204582|ref|ZP_00209471.1| COG2255: Holliday junction resolvasome, helicase subunit
           [Magnetospirillum magnetotacticum MS-1]
          Length = 293

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 207/287 (72%), Positives = 246/287 (85%), Gaps = 1/287 (0%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           +D D S+ RP +L EF GQ  A +N+++FIEAAK   +ALDHVLFVGPPGLGKTTLAQ+V
Sbjct: 8   DDVDQSI-RPLSLAEFIGQRAARANMQIFIEAAKKTGQALDHVLFVGPPGLGKTTLAQIV 66

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           ARELGVNFRSTSGPVIAKAGDLAA LTNLE+RDVLFIDEIHRL+  VEEILYPAMED+QL
Sbjct: 67  ARELGVNFRSTSGPVIAKAGDLAAQLTNLEERDVLFIDEIHRLNPAVEEILYPAMEDYQL 126

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           DL++GEGP+ARSVKI L +FTL+ ATTR GLLT PL+DRFGIPIRL FYEI++L+ IV+R
Sbjct: 127 DLIIGEGPAARSVKIELPKFTLVGATTRAGLLTTPLRDRFGIPIRLEFYEIDELELIVRR 186

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
           GA++ GL +++E A EIA R+RGTPRIAGRLLRRVRDFA V  A+T++R IAD AL  L 
Sbjct: 187 GARVLGLGMSEEGANEIAKRARGTPRIAGRLLRRVRDFAIVEEAQTVSRAIADRALQMLD 246

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           +D +G D +D +YLT+IA +FGGGPVGIETI+A LSEPRDAIED+IE
Sbjct: 247 VDPVGLDVMDRKYLTLIASSFGGGPVGIETIAAALSEPRDAIEDIIE 293


>gi|149203739|ref|ZP_01880708.1| Holliday junction DNA helicase B [Roseovarius sp. TM1035]
 gi|149142856|gb|EDM30898.1| Holliday junction DNA helicase B [Roseovarius sp. TM1035]
          Length = 342

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 206/318 (64%), Positives = 250/318 (78%), Gaps = 1/318 (0%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           ED D SL RP+ L EF GQ EA +NL VFI++A+ R +A+DH LF GPPGLGKTTLAQ++
Sbjct: 15  EDQDRSL-RPQALSEFIGQREARANLAVFIQSARQRGDAMDHTLFHGPPGLGKTTLAQIM 73

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           ARELGV FR TSGPV+AKAGDLAA+LTNLE  DVLFIDEIHRL+  VEE+LYPAMEDF+L
Sbjct: 74  ARELGVGFRMTSGPVLAKAGDLAAILTNLERNDVLFIDEIHRLNPAVEEVLYPAMEDFEL 133

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           DL++GEGP+AR+V+I L  FTL+ ATTR+GLLT PL+DRFGIP RL FYEI++L  IV R
Sbjct: 134 DLVIGEGPAARTVRIELQPFTLVGATTRLGLLTTPLRDRFGIPTRLQFYEIDELHEIVTR 193

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            AKL  +    + A EIA R+RGTPRIAGRLLRRV DFA V     I+R +AD++L RL 
Sbjct: 194 NAKLLNIPTDPDGAREIARRARGTPRIAGRLLRRVVDFAVVEGGGKISRALADSSLTRLG 253

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D +G D  D RYL +IA  + GGPVGIET+SA LSE RDA+E++IEP+++QQG IQRTP
Sbjct: 254 VDHLGLDGADRRYLRLIAEAYQGGPVGIETLSAALSESRDALEEVIEPFLLQQGLIQRTP 313

Query: 315 RGRLLMPIAWQHLGIDIP 332
           RGR+L    W HLG+  P
Sbjct: 314 RGRMLAQGGWAHLGLAAP 331


>gi|295688117|ref|YP_003591810.1| Holliday junction DNA helicase Ruvb [Caulobacter segnis ATCC 21756]
 gi|295430020|gb|ADG09192.1| Holliday junction DNA helicase RuvB [Caulobacter segnis ATCC 21756]
          Length = 346

 Score =  412 bits (1059), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 203/311 (65%), Positives = 246/311 (79%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+TL EF GQ +A  NL+VFIEAAK R EALDHVL  GPPGLGKTTLAQ+VARELGVN
Sbjct: 21  LRPQTLAEFVGQEQAKGNLRVFIEAAKGRGEALDHVLLFGPPGLGKTTLAQIVARELGVN 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           FR+TSGPV+ K GDLAA+LTNLE  DVLFIDEIHRLS  VEEILYPAMED  LDL++GEG
Sbjct: 81  FRATSGPVLNKPGDLAAILTNLEANDVLFIDEIHRLSSNVEEILYPAMEDHVLDLVIGEG 140

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSARS++I+L+ FTL+AATTR G+L  PL+DRFGIPIRL FY   +L+ ++Q  A+  G 
Sbjct: 141 PSARSIRIDLAPFTLVAATTRAGMLATPLRDRFGIPIRLEFYTPAELRHVLQHAARKMGA 200

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            ++D+ A EIA R+RGTPR+AGRLLRRVRDFA    A  I R+ A  AL RL +D+ G D
Sbjct: 201 PLSDDGADEIAKRARGTPRVAGRLLRRVRDFATADGATVIDRKAAGLALARLEVDESGLD 260

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            LD RYL  +  ++GGGPVG+ETI+  ++E RDA+ED+IEPY++QQGFIQRTPRGR+   
Sbjct: 261 SLDRRYLRAMIEHYGGGPVGVETIAYAIAEARDAVEDVIEPYLMQQGFIQRTPRGRMACG 320

Query: 322 IAWQHLGIDIP 332
            A+ HLG+  P
Sbjct: 321 KAYLHLGLTPP 331


>gi|239947234|ref|ZP_04698987.1| holliday junction DNA helicase RuvB [Rickettsia endosymbiont of
           Ixodes scapularis]
 gi|239921510|gb|EER21534.1| holliday junction DNA helicase RuvB [Rickettsia endosymbiont of
           Ixodes scapularis]
          Length = 342

 Score =  411 bits (1056), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 199/329 (60%), Positives = 254/329 (77%), Gaps = 1/329 (0%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            +LS   S+ D ++ + RP  L+EF GQ +   NL VFI+AAK+R E LDH LF GPPGL
Sbjct: 3   NILSPEKSENDQELPI-RPSYLQEFVGQQQIKENLSVFIKAAKSRNEHLDHTLFYGPPGL 61

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLA++++ E+G NF+STSGP I KA DLAA+LTNLE  DVLFIDEIHRL+  VEE+L
Sbjct: 62  GKTTLAKIISNEIGGNFKSTSGPAILKAADLAAILTNLEKNDVLFIDEIHRLNTAVEEVL 121

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           Y AMEDF+LD+++GEGP+ARSVKI L +FTLI ATTR+GLL+NPL+DRFGIP+RLNFY  
Sbjct: 122 YSAMEDFELDIIIGEGPAARSVKITLPKFTLIGATTRLGLLSNPLRDRFGIPMRLNFYNT 181

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           E+LK ++ R +KL  + +TD  + EIA RSRGTPRIA RLLRR+RDFA V     + +EI
Sbjct: 182 EELKKVLNRASKLLDIDLTDSGSEEIAKRSRGTPRIALRLLRRIRDFAAVDGKSRVDKEI 241

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           +D  L RL +D++G D  D RYL  IA N+ GGPVGIETI+A LSE RDA+E+ IEPY+I
Sbjct: 242 SDFGLNRLEVDRIGLDSNDYRYLKFIADNYNGGPVGIETIAAALSEQRDALEETIEPYLI 301

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           Q G +QRTPRGR++   A++HL + IP++
Sbjct: 302 QIGLLQRTPRGRVITIAAFEHLKMPIPNQ 330


>gi|67458998|ref|YP_246622.1| Holliday junction DNA helicase B [Rickettsia felis URRWXCal2]
 gi|75536566|sp|Q4ULW6|RUVB_RICFE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|67004531|gb|AAY61457.1| Holliday junction DNA helicase RuvB [Rickettsia felis URRWXCal2]
          Length = 342

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 196/313 (62%), Positives = 246/313 (78%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  L+EF GQ +   NL VFI+AAK+R E LDH LF GPPGLGKTTLA++++ E+G N
Sbjct: 18  IRPSYLQEFVGQQQIKENLSVFIKAAKSRNEHLDHTLFYGPPGLGKTTLAKIISNEIGGN 77

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           F+STSGP I KA DLAA+LTNLE  DVLFIDEIHRL+  VEE+LYPAMEDF+LD+++GEG
Sbjct: 78  FKSTSGPAILKAADLAAILTNLEKNDVLFIDEIHRLNTAVEEVLYPAMEDFELDIIIGEG 137

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARSVKI L +FTLI ATTR+GLL+NPL+DRFGIP+RLNFY  E+LK ++ R +KL  +
Sbjct: 138 PAARSVKITLPKFTLIGATTRLGLLSNPLRDRFGIPMRLNFYNTEELKKVLNRASKLFDI 197

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +TD  + EIA RSRGTPRIA RLLRR+RDFA V     + +EI+D  L RL +D +G D
Sbjct: 198 DLTDSGSEEIAKRSRGTPRIALRLLRRIRDFAAVDGKSRVDKEISDFGLNRLEVDHIGLD 257

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             D RYL  IA N+ GGPVGIETI+A LSE RDA+E+ IEPY+IQ G +QRTPRGR++  
Sbjct: 258 SNDYRYLKFIADNYNGGPVGIETIAAALSEQRDALEETIEPYLIQIGLLQRTPRGRVITI 317

Query: 322 IAWQHLGIDIPHR 334
            A++HL + IP++
Sbjct: 318 AAFEHLKMPIPNQ 330


>gi|149915611|ref|ZP_01904137.1| Holliday junction DNA helicase RuvB [Roseobacter sp. AzwK-3b]
 gi|149810503|gb|EDM70346.1| Holliday junction DNA helicase RuvB [Roseobacter sp. AzwK-3b]
          Length = 342

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 207/318 (65%), Positives = 250/318 (78%), Gaps = 1/318 (0%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           ED+D SL RP+ L EF GQ EA +NL++FI++A+ R EA+DH LF GPPGLGKTTLAQ++
Sbjct: 15  EDSDRSL-RPQALSEFIGQAEARANLRIFIQSARQRGEAMDHTLFHGPPGLGKTTLAQIM 73

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           +RELGV FR TSGPV+AKAGDLAA+LTNLE  DVLFIDEIHRL+  VEE+LYPAMEDF+L
Sbjct: 74  SRELGVGFRMTSGPVLAKAGDLAAILTNLERNDVLFIDEIHRLNPAVEEVLYPAMEDFEL 133

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           DL++GEGP+AR+V+I L  FTL+ ATTR+GLLT PL+DRFGIP RL FY  ++L  IV R
Sbjct: 134 DLVIGEGPAARTVRIELQPFTLVGATTRLGLLTTPLRDRFGIPTRLEFYTEDELHEIVTR 193

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A L       E A EIA R+RGTPRIAGRLLRRV DFA V     ITR++AD AL RL 
Sbjct: 194 NAVLLNAPADTEGAREIARRARGTPRIAGRLLRRVVDFALVEGDGRITRDLADHALTRLG 253

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +DK+G D  D RYL +IA  + GGPVGIET+SA LSE RDA+E++IEP+++QQG IQRTP
Sbjct: 254 VDKLGLDGADRRYLRLIAEAYQGGPVGIETLSAALSESRDALEEVIEPFLLQQGLIQRTP 313

Query: 315 RGRLLMPIAWQHLGIDIP 332
           RGR+L   AW HLG+  P
Sbjct: 314 RGRMLAQRAWAHLGMAPP 331


>gi|332967834|gb|EGK06933.1| crossover junction ATP-dependent DNA helicase RuvB [Kingella kingae
           ATCC 23330]
          Length = 344

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 200/317 (63%), Positives = 243/317 (76%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           SQE+     LRP+ L ++ GQ +A   L +FIEAAK R EALDH L  GPPGLGKTTLA 
Sbjct: 23  SQEEQLERALRPKLLSDYIGQRKAKEQLGIFIEAAKKRGEALDHTLLFGPPGLGKTTLAN 82

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           +VARELGVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPAMED+
Sbjct: 83  IVARELGVNLRQTSGPVLERAGDLAALLTNLEPHDVLFIDEIHRLSPVVEEILYPAMEDY 142

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           QLD+M+GEGP+ARSVKI+L  FTLI ATTR G+LTNPL+DRFGI  RL FYE  DL TIV
Sbjct: 143 QLDIMIGEGPAARSVKIDLPPFTLIGATTRAGMLTNPLRDRFGIVARLEFYETADLATIV 202

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           +R A+L  + +  + A E+A RSRGTPRIA RLLRRVRD+AEV HA  I   +ADAAL  
Sbjct: 203 RRSAQLLNMTLDKQGAWEVARRSRGTPRIANRLLRRVRDYAEVKHAGKIDANVADAALSM 262

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +DK+G D +D ++L  +   F GGPVG++ ++A + E  D IED+IEPY+IQQGF+QR
Sbjct: 263 LDVDKIGLDMMDRKFLEAVLHKFSGGPVGLDNVAAAIGESTDTIEDVIEPYLIQQGFLQR 322

Query: 313 TPRGRLLMPIAWQHLGI 329
           TPRGR+    A++H G+
Sbjct: 323 TPRGRMATASAFEHFGL 339


>gi|167644752|ref|YP_001682415.1| Holliday junction DNA helicase RuvB [Caulobacter sp. K31]
 gi|189046023|sp|B0SUN9|RUVB_CAUSK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|167347182|gb|ABZ69917.1| Holliday junction DNA helicase RuvB [Caulobacter sp. K31]
          Length = 348

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 199/311 (63%), Positives = 246/311 (79%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+TL EF GQ +A +NL++FIEAAK R EALDHVL  GPPGLGKTTLAQ+VARELGVN
Sbjct: 23  LRPQTLAEFVGQEQAKANLRIFIEAAKGRGEALDHVLLFGPPGLGKTTLAQIVARELGVN 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           FR+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRL   VEEILYPAMED  LDL++GEG
Sbjct: 83  FRATSGPVLNKAGDLAAILTNLEANDVLFIDEIHRLPSTVEEILYPAMEDHVLDLVIGEG 142

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSARS++I+L+ FTL+AATTR G+L  PL+DRFGIPIRL FY  ++L+ ++   A+  G 
Sbjct: 143 PSARSIRIDLAPFTLVAATTRAGMLATPLRDRFGIPIRLEFYTPKELQHVLLGAARKMGA 202

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + ++ A EIA R+RGTPR+AGRLLRRVRDFA    A  I R+ A  AL RL +D++G D
Sbjct: 203 PLNEDGAAEIAARARGTPRVAGRLLRRVRDFASADGASVIDRKAAGMALARLEVDELGLD 262

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            LD RYL  +  N+GGGP G+ET++  ++E RDA+ED+IEPY++QQGFIQRTPRGR+   
Sbjct: 263 SLDRRYLRALIENYGGGPAGVETLAYAIAEARDAVEDVIEPYLMQQGFIQRTPRGRMACG 322

Query: 322 IAWQHLGIDIP 332
            A+ HLG+  P
Sbjct: 323 KAYLHLGLTEP 333


>gi|163745819|ref|ZP_02153178.1| Holliday junction DNA helicase B [Oceanibulbus indolifex HEL-45]
 gi|161380564|gb|EDQ04974.1| Holliday junction DNA helicase B [Oceanibulbus indolifex HEL-45]
          Length = 339

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 206/318 (64%), Positives = 250/318 (78%), Gaps = 1/318 (0%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           ED D +L RP+ L EF GQ EA +NL VFI++A+ R EA+DH LF GPPGLGKTTLAQ++
Sbjct: 15  EDFDRAL-RPQMLAEFVGQAEARANLAVFIQSARQRGEAMDHTLFHGPPGLGKTTLAQIM 73

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           ARELGV FR TSGPV+AKAGDLAA+LTNLE RDVLFIDEIHRL+  VEE+LYPA+EDF+L
Sbjct: 74  ARELGVGFRMTSGPVLAKAGDLAAILTNLEARDVLFIDEIHRLNPAVEEVLYPALEDFEL 133

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           DL++GEGP+AR+V+I L  FTL+ ATTR+GLLT PL+DRFGIP RL FY  ++L  IV R
Sbjct: 134 DLVIGEGPAARTVRIELQPFTLVGATTRMGLLTTPLRDRFGIPTRLQFYTEDELFIIVDR 193

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A+  G    +  A EIA R+RGTPRIAGRLLRRV DFA V     +T+E+AD AL RL 
Sbjct: 194 NARKLGAPADEGGAREIAKRARGTPRIAGRLLRRVVDFAVVEGDGRVTQELADMALTRLG 253

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D +G D  D RYL +IA N+ GGPVGIET+SA LSE RDA+E++IEP+++QQG IQRTP
Sbjct: 254 VDHLGLDGADRRYLKLIAENYQGGPVGIETLSAALSESRDALEEVIEPFLLQQGLIQRTP 313

Query: 315 RGRLLMPIAWQHLGIDIP 332
           RGR+L   AW HLG+  P
Sbjct: 314 RGRMLAAKAWTHLGMAAP 331


>gi|165933118|ref|YP_001649907.1| Holliday junction DNA helicase RuvB [Rickettsia rickettsii str.
           Iowa]
 gi|165908205|gb|ABY72501.1| Holliday junction DNA helicase [Rickettsia rickettsii str. Iowa]
          Length = 354

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 196/329 (59%), Positives = 253/329 (76%), Gaps = 1/329 (0%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            +LS   S+ D ++ + RP  L+EF GQ +   NL VFI+AAK+R E LDH LF GPPGL
Sbjct: 15  NILSPEKSENDQELPI-RPSYLQEFVGQQQIKENLSVFIKAAKSRNEHLDHTLFYGPPGL 73

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLA++++ E+G NF+STSGP I K  DLAA+LTNLE  DVLFIDEIHRL+  VEE+L
Sbjct: 74  GKTTLAKIISNEIGGNFKSTSGPAILKVADLAAILTNLEKNDVLFIDEIHRLNTAVEEVL 133

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           YPAMEDF+LD+++GEG +ARSVKI L +FTLI ATTR+GLL+NPL+DRFGIP+RLNFY  
Sbjct: 134 YPAMEDFELDIIIGEGSAARSVKITLPKFTLIGATTRLGLLSNPLRDRFGIPMRLNFYNT 193

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           E+LK ++ R +KL  + +TD  + EIA RSRGTPRIA RLLRR+RDFA V     + +E+
Sbjct: 194 EELKKVLNRASKLLDIDLTDSGSEEIAKRSRGTPRIALRLLRRIRDFAAVEGKSRVDKEV 253

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           +D  L RL +D++G D  D RYL  IA N+ GGPVGIETI+A LSE RDA+E+ IEPY+I
Sbjct: 254 SDFGLNRLEVDRIGLDSNDYRYLKFIADNYNGGPVGIETIAAALSEQRDALEETIEPYLI 313

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           Q G +QRTPRGR++   A++HL + +P++
Sbjct: 314 QIGLLQRTPRGRVITIAAFEHLKMSVPNQ 342


>gi|83950116|ref|ZP_00958849.1| Holliday junction DNA helicase RuvB [Roseovarius nubinhibens ISM]
 gi|83838015|gb|EAP77311.1| Holliday junction DNA helicase RuvB [Roseovarius nubinhibens ISM]
          Length = 342

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 205/318 (64%), Positives = 249/318 (78%), Gaps = 1/318 (0%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           ED D +L RP+ LE+F GQ EA SNL++FI++A+ R EA+DH LF GPPGLGKTTLAQ++
Sbjct: 15  EDFDRAL-RPQALEDFIGQAEARSNLRIFIQSARQRGEAMDHTLFHGPPGLGKTTLAQIM 73

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           ARELGV FR TSGPV+AKAGDLAA+LTNLE RDVLFIDEIHRL+  VEE+LYPA+EDF+L
Sbjct: 74  ARELGVGFRMTSGPVLAKAGDLAAILTNLEARDVLFIDEIHRLNPAVEEVLYPALEDFEL 133

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           DL++GEGP+AR+V+I L  FTL+ ATTR+GLLT PL+DRFGIP RL FY +E+L  IV R
Sbjct: 134 DLVIGEGPAARTVRIELQPFTLVGATTRLGLLTTPLRDRFGIPTRLQFYTVEELNEIVWR 193

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A    +    + A EIA RSRGTPRIAGRLLRRV DFA V     IT+ +AD AL RL 
Sbjct: 194 NADKLKVPAERDGAMEIARRSRGTPRIAGRLLRRVVDFAVVEGDGKITKALADNALTRLG 253

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D +G D  D RYL +IA  + GGPVGIET+SA LSE RDA+E++IEP+++QQG IQRTP
Sbjct: 254 VDHLGLDGADRRYLRLIAEAYQGGPVGIETLSAALSESRDALEEVIEPFLLQQGLIQRTP 313

Query: 315 RGRLLMPIAWQHLGIDIP 332
           RGR+L    W HLG+  P
Sbjct: 314 RGRMLAQGGWTHLGLAPP 331


>gi|84501646|ref|ZP_00999818.1| Holliday junction DNA helicase RuvB [Oceanicola batsensis HTCC2597]
 gi|84390267|gb|EAQ02826.1| Holliday junction DNA helicase RuvB [Oceanicola batsensis HTCC2597]
          Length = 342

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 203/319 (63%), Positives = 250/319 (78%), Gaps = 1/319 (0%)

Query: 15  EDA-DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           EDA D   LRP+TL++F GQ EA +NL+VF+++A+ R EA+DH LF GPPGLGKTTLAQ+
Sbjct: 14  EDAEDTRALRPQTLDDFIGQREARANLRVFVQSARQRGEAMDHTLFHGPPGLGKTTLAQI 73

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +ARELGVNFR TSGPV+AKAGDLAA+LTNLE RDVLFIDEIHRL+  VEE+LYPA+EDF+
Sbjct: 74  MARELGVNFRMTSGPVLAKAGDLAAILTNLEARDVLFIDEIHRLNPAVEEVLYPALEDFE 133

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           LDL++GEGP+AR+V+I L  FTL+ ATTR+GLLT PL+DRFGIP RL FY  ++L  IV 
Sbjct: 134 LDLVIGEGPAARTVRIELQPFTLVGATTRLGLLTTPLRDRFGIPTRLQFYTEDELHEIVT 193

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A+  G     + A EIA R+RGTPRIAGRLLRRV DFA V     ITR++AD AL RL
Sbjct: 194 RNARKLGAPADADGAREIARRARGTPRIAGRLLRRVVDFAVVEGDGRITRDLADNALTRL 253

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D +G D  D RYL MI  ++ GGPVGIET+ A LSE RD++E++IEPY++QQ  IQRT
Sbjct: 254 GVDNLGLDGADRRYLKMIGEDYQGGPVGIETLCAALSESRDSVEEVIEPYLLQQALIQRT 313

Query: 314 PRGRLLMPIAWQHLGIDIP 332
           PRGR+L    W H+G+  P
Sbjct: 314 PRGRMLAARGWAHIGLPPP 332


>gi|157828408|ref|YP_001494650.1| Holliday junction DNA helicase RuvB [Rickettsia rickettsii str.
           'Sheila Smith']
 gi|166231549|sp|A8GRW7|RUVB_RICRS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|157800889|gb|ABV76142.1| Holliday junction DNA helicase B [Rickettsia rickettsii str.
           'Sheila Smith']
          Length = 342

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 196/329 (59%), Positives = 253/329 (76%), Gaps = 1/329 (0%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            +LS   S+ D ++ + RP  L+EF GQ +   NL VFI+AAK+R E LDH LF GPPGL
Sbjct: 3   NILSPEKSENDQELPI-RPSYLQEFVGQQQIKENLSVFIKAAKSRNEHLDHTLFYGPPGL 61

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLA++++ E+G NF+STSGP I K  DLAA+LTNLE  DVLFIDEIHRL+  VEE+L
Sbjct: 62  GKTTLAKIISNEIGGNFKSTSGPAILKVADLAAILTNLEKNDVLFIDEIHRLNTAVEEVL 121

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           YPAMEDF+LD+++GEG +ARSVKI L +FTLI ATTR+GLL+NPL+DRFGIP+RLNFY  
Sbjct: 122 YPAMEDFELDIIIGEGSAARSVKITLPKFTLIGATTRLGLLSNPLRDRFGIPMRLNFYNT 181

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           E+LK ++ R +KL  + +TD  + EIA RSRGTPRIA RLLRR+RDFA V     + +E+
Sbjct: 182 EELKKVLNRASKLLDIDLTDSGSEEIAKRSRGTPRIALRLLRRIRDFAAVEGKSRVDKEV 241

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           +D  L RL +D++G D  D RYL  IA N+ GGPVGIETI+A LSE RDA+E+ IEPY+I
Sbjct: 242 SDFGLNRLEVDRIGLDSNDYRYLKFIADNYNGGPVGIETIAAALSEQRDALEETIEPYLI 301

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           Q G +QRTPRGR++   A++HL + +P++
Sbjct: 302 QIGLLQRTPRGRVITIAAFEHLKMSVPNQ 330


>gi|238650927|ref|YP_002916783.1| Holliday junction DNA helicase B [Rickettsia peacockii str. Rustic]
 gi|259495677|sp|C4K2D4|RUVB_RICPU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|238625025|gb|ACR47731.1| Holliday junction DNA helicase B [Rickettsia peacockii str. Rustic]
          Length = 342

 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 197/329 (59%), Positives = 253/329 (76%), Gaps = 1/329 (0%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            +LS   S+ D ++ + RP  L+EF GQ +   NL VFI+AAK+R E LDH LF GPPGL
Sbjct: 3   NILSPEKSENDQELPI-RPSYLQEFVGQQQIKENLSVFIKAAKSRNEHLDHTLFYGPPGL 61

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLA++++ E+G NF+STSGP I K  DLAA+LTNLE  DVLFIDEIHRL+  VEE+L
Sbjct: 62  GKTTLAKIISNEIGGNFKSTSGPAILKVADLAAILTNLEKNDVLFIDEIHRLNTAVEEVL 121

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           YPAMEDF+LD+++GEG +ARSVKI L +FTLI ATTR+GLL+NPL+DRFGIP+RLNFY  
Sbjct: 122 YPAMEDFELDIIIGEGSAARSVKITLPKFTLIGATTRLGLLSNPLRDRFGIPMRLNFYNT 181

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           E+LK ++ R +KL  + +TD  + EIA RSRGTPRIA RLLRR+RDFA V     + +EI
Sbjct: 182 EELKKVLNRASKLLDIDLTDSGSEEIAKRSRGTPRIALRLLRRIRDFAAVDGKSRVDKEI 241

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           +D  L RL +D++G D  D RYL  IA N+ GGPVGIETI+A LSE RDA+E+ IEPY+I
Sbjct: 242 SDFGLKRLEVDRIGLDSNDYRYLKFIADNYNGGPVGIETIAAALSEQRDALEETIEPYLI 301

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           Q G +QRTPRGR++   A++HL + +P++
Sbjct: 302 QIGLLQRTPRGRVITIAAFEHLKMPVPNQ 330


>gi|34580549|ref|ZP_00142029.1| holliday junction DNA helicase RuvB [Rickettsia sibirica 246]
 gi|28261934|gb|EAA25438.1| holliday junction DNA helicase RuvB [Rickettsia sibirica 246]
          Length = 342

 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 197/329 (59%), Positives = 253/329 (76%), Gaps = 1/329 (0%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            +LS   S+ D ++ + RP  L+EF GQ +   NL VFI+AAK+R E LDH LF GPPGL
Sbjct: 3   NILSPEKSENDQELPI-RPSYLQEFVGQQQIKENLSVFIKAAKSRNEHLDHTLFYGPPGL 61

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLA++++ E+G NF+STSGP I K  DLAA+LTNLE  DVLFIDEIHRL+  VEE+L
Sbjct: 62  GKTTLAKIISNEIGGNFKSTSGPAILKVADLAAILTNLEKNDVLFIDEIHRLNTAVEEVL 121

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           YPAMEDF+LD+++GEG +ARSVKI L +FTLI ATTR+GLL+NPL+DRFGIP+RLNFY  
Sbjct: 122 YPAMEDFELDIIIGEGSAARSVKITLPKFTLIGATTRLGLLSNPLRDRFGIPMRLNFYNT 181

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           E+LK ++ R +KL  + +TD  + EIA RSRGTPRIA RLLRR+RDFA V     + +EI
Sbjct: 182 EELKKVLNRASKLLDIDLTDSGSEEIAKRSRGTPRIALRLLRRIRDFAAVDGKSRVDKEI 241

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           +D  L RL +D++G D  D RYL  IA N+ GGPVGIETI+A LSE RDA+E+ IEPY+I
Sbjct: 242 SDFGLNRLEVDRIGLDSNDYRYLKFIADNYNGGPVGIETIAAALSEQRDALEETIEPYLI 301

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           Q G +QRTPRGR++   A++HL + +P++
Sbjct: 302 QIGLLQRTPRGRVITIAAFEHLKMPVPNQ 330


>gi|157964466|ref|YP_001499290.1| Holliday junction DNA helicase RuvB [Rickettsia massiliae MTU5]
 gi|172045665|sp|A8F1F7|RUVB_RICM5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|157844242|gb|ABV84743.1| Holliday junction DNA helicase RuvB [Rickettsia massiliae MTU5]
          Length = 353

 Score =  408 bits (1048), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 198/328 (60%), Positives = 253/328 (77%), Gaps = 1/328 (0%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           LLS   S+ D ++ + RP  L+EF GQ +   NL VFI+AAK+R E LDH LF GPPGLG
Sbjct: 15  LLSPEKSENDQELPI-RPSYLQEFVGQQQIKENLSVFIKAAKSRNEHLDHTLFYGPPGLG 73

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTTLA++++ E+G NF+STSGP I K  DLAA+LTNLE  DVLFIDEIHRL+  VEE+LY
Sbjct: 74  KTTLAKIISNEIGGNFKSTSGPAILKVADLAAILTNLERNDVLFIDEIHRLNTAVEEVLY 133

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           PAMEDF+LD+++GEG +ARSVKI L +FTLI ATTR+GLL+NPL+DRFGIP+RLNFY  E
Sbjct: 134 PAMEDFELDIIIGEGSAARSVKITLPKFTLIGATTRLGLLSNPLRDRFGIPMRLNFYNTE 193

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +LK ++ R +KL  + +TD  + EIA RSRGTPRIA RLLRR+RDFA V     + +EI+
Sbjct: 194 ELKKVLNRASKLLDIDLTDSGSEEIAKRSRGTPRIALRLLRRIRDFAAVDGKSRVDKEIS 253

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           D  L RL +D++G D  D RYL  IA N+ GGPVGIETI+A LSE RDA+E+ IEPY+IQ
Sbjct: 254 DFGLNRLEVDRIGLDSNDYRYLKFIADNYNGGPVGIETIAAALSEQRDALEETIEPYLIQ 313

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
            G +QRTPRGR++   A++HL + +P++
Sbjct: 314 IGLLQRTPRGRVITIAAFEHLKMPVPNQ 341


>gi|157825660|ref|YP_001493380.1| Holliday junction DNA helicase RuvB [Rickettsia akari str.
           Hartford]
 gi|166231546|sp|A8GN97|RUVB_RICAH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|157799618|gb|ABV74872.1| Holliday junction DNA helicase B [Rickettsia akari str. Hartford]
          Length = 342

 Score =  408 bits (1048), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 199/329 (60%), Positives = 253/329 (76%), Gaps = 1/329 (0%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            +LS   S  D ++ + RP  L+EF GQ +   NL VFI+AAK+R + LDH LF GPPGL
Sbjct: 3   NILSPEKSDNDQELPI-RPSYLQEFVGQQQIKENLSVFIKAAKSRNQHLDHTLFYGPPGL 61

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLA++++ E+G NF+STSGP I KA DLAA+LTNLE  DVLFIDEIHRL+  VEEIL
Sbjct: 62  GKTTLAKIISNEIGGNFKSTSGPAILKAADLAAILTNLEKNDVLFIDEIHRLNTAVEEIL 121

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           YPAMEDF+LD+++GEGP+ARSVKI L +FTLI ATTR+GLL+NPL+DRFGIP+RLNFY  
Sbjct: 122 YPAMEDFELDIIIGEGPAARSVKITLPKFTLIGATTRLGLLSNPLRDRFGIPMRLNFYNT 181

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           E+LK ++ R +KL  + +TD  + EIA RSRGTPRIA RLLRR+RDFA V     + +EI
Sbjct: 182 EELKKVLNRASKLFDIDLTDSGSEEIAKRSRGTPRIALRLLRRIRDFAAVDGKSRVDKEI 241

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           +D  L RL +D +G D  D RYL  IA ++ GGPVGIETI+A LSE RDA+E+ IEPY+I
Sbjct: 242 SDFGLKRLEVDLIGLDSNDYRYLKFIADHYNGGPVGIETIAAALSEERDALEETIEPYLI 301

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           Q G +QRTPRGR++   A++HL + IP++
Sbjct: 302 QIGLLQRTPRGRVITIAAFEHLKMPIPNQ 330


>gi|294788244|ref|ZP_06753487.1| holliday junction DNA helicase RuvB [Simonsiella muelleri ATCC
           29453]
 gi|294483675|gb|EFG31359.1| holliday junction DNA helicase RuvB [Simonsiella muelleri ATCC
           29453]
          Length = 344

 Score =  407 bits (1047), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 195/308 (63%), Positives = 243/308 (78%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+TL ++ GQ +A + L +FI+AAK R EALDH L  GPPGLGKTTLA ++ARELGVN
Sbjct: 32  LRPKTLADYIGQDKAKTQLAIFIQAAKNRGEALDHTLLFGPPGLGKTTLANIMARELGVN 91

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPAMED+QLD+M+GEG
Sbjct: 92  LRQTSGPVLERAGDLAALLTNLEPHDVLFIDEIHRLSPVVEEILYPAMEDYQLDIMIGEG 151

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARSVKI+L  FTL+ ATTR G+LTNPL+DRFGI  RL FY+ +DL TIV R A+L  +
Sbjct: 152 PAARSVKIDLPPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYKNKDLATIVARSAQLLNM 211

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + ++ A EIA RSRGTPRIA RLLRRVRD+AEV H+ +I  +IADAAL  L +DK+G D
Sbjct: 212 DLDEQGAWEIACRSRGTPRIANRLLRRVRDYAEVLHSGSIDAKIADAALSMLDVDKIGLD 271

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D ++L  +   F GGPVG++ ++A + E  D IED+IEPY+IQQGF+QRTPRGR+   
Sbjct: 272 MMDRKFLEAVLHKFAGGPVGLDNVAAAIGESTDTIEDVIEPYLIQQGFLQRTPRGRMATD 331

Query: 322 IAWQHLGI 329
            A+ H G+
Sbjct: 332 AAYSHFGL 339


>gi|167623852|ref|YP_001674146.1| Holliday junction DNA helicase RuvB [Shewanella halifaxensis
           HAW-EB4]
 gi|189046049|sp|B0TSA7|RUVB_SHEHH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|167353874|gb|ABZ76487.1| Holliday junction DNA helicase RuvB [Shewanella halifaxensis
           HAW-EB4]
          Length = 337

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 196/311 (63%), Positives = 245/311 (78%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L+E+TGQ +  + LK+FIEAA+ R EALDH+L  GPPGLGKTTLA +VA E+GVN
Sbjct: 25  MRPKMLDEYTGQDDTRAQLKIFIEAAQKRGEALDHMLIYGPPGLGKTTLAMIVANEMGVN 84

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            +STSGPV+ KAGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPAMED+QLD+M+GEG
Sbjct: 85  IKSTSGPVLEKAGDLAALLTNLEPNDVLFIDEIHRLSPVVEEILYPAMEDYQLDIMIGEG 144

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+K++L  FTL+ ATTR G LT+PL+ RFGIP+RL FY ++DL +IV R AK+  L
Sbjct: 145 PAARSIKLDLPPFTLVGATTRAGALTSPLRARFGIPLRLEFYNVKDLSSIVARSAKVMAL 204

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + DE A EIA RSRGTPRIA RLLRRVRDFAEV H+  +T+ IA+AAL  L +D  GFD
Sbjct: 205 EIDDEGAVEIARRSRGTPRIANRLLRRVRDFAEVKHSGDVTKVIAEAALDMLDVDAEGFD 264

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  I   F GGPVG++ ++A + E R+ IED++EP++IQQGFIQRTPRGR+  P
Sbjct: 265 YMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETIEDVLEPFLIQQGFIQRTPRGRIATP 324

Query: 322 IAWQHLGIDIP 332
            A+ H  I  P
Sbjct: 325 RAYNHFNIIKP 335


>gi|229586658|ref|YP_002845159.1| Holliday junction DNA helicase RuvB [Rickettsia africae ESF-5]
 gi|259495676|sp|C3PNA6|RUVB_RICAE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|228021708|gb|ACP53416.1| Holliday junction DNA helicase RuvB [Rickettsia africae ESF-5]
          Length = 342

 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 196/329 (59%), Positives = 252/329 (76%), Gaps = 1/329 (0%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            +LS   S+ D ++ + RP  L+EF GQ +   NL VFI+AAK+R E LDH LF GPPGL
Sbjct: 3   NILSPEKSENDQELPI-RPSYLQEFVGQQQIKENLSVFIKAAKSRNEHLDHTLFYGPPGL 61

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLA++++ E+G NF+STSGP I K  DLAA+LTNLE  DVLFIDEIHRL+  +EE+L
Sbjct: 62  GKTTLAKIISNEIGGNFKSTSGPAILKVADLAAILTNLEKNDVLFIDEIHRLNTAIEEVL 121

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           YPAMEDF+LD+++GEG +ARSVKI L +FTLI ATTR+GLL+NPL+DRFGIP+RLNFY  
Sbjct: 122 YPAMEDFELDIIIGEGSAARSVKITLPKFTLIGATTRLGLLSNPLRDRFGIPMRLNFYNT 181

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           E+LK ++ R +KL  + +TD  + EIA RSRGTPRIA RLLRR+RDFA V     + +EI
Sbjct: 182 EELKKVLNRASKLLDIDLTDSGSEEIAKRSRGTPRIALRLLRRIRDFAAVDGKSRVDKEI 241

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           +D  L RL +D +G D  D RYL  IA N+ GGPVGIETI+A LSE RDA+E+ IEPY+I
Sbjct: 242 SDFGLNRLEVDCIGLDSNDYRYLKFIADNYNGGPVGIETIAAALSEQRDALEETIEPYLI 301

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           Q G +QRTPRGR++   A++HL + +P++
Sbjct: 302 QIGLLQRTPRGRVITIAAFEHLKMPVPNQ 330


>gi|20140117|sp|Q92I87|RUVB_RICCN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
          Length = 342

 Score =  405 bits (1042), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 196/329 (59%), Positives = 252/329 (76%), Gaps = 1/329 (0%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            +LS   S+ D ++ + RP  L+EF GQ +   NL VFI+AAK+R E LDH LF GPPGL
Sbjct: 3   NILSPEKSENDQELPI-RPSYLQEFVGQQQIKENLSVFIKAAKSRNEHLDHTLFYGPPGL 61

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLA++++ E+G NF+STSGP I K  DLAA+LTNLE  DVLFIDEIHRL+  VEE+L
Sbjct: 62  GKTTLAKIISNEIGGNFKSTSGPAILKVADLAAILTNLEKNDVLFIDEIHRLNTAVEEVL 121

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           YPAMEDF+LD+++GEG +ARSVKI L +FTLI ATTR+GLL+NPL+DRFGIP+RLNFY  
Sbjct: 122 YPAMEDFELDIIIGEGSAARSVKITLPKFTLIGATTRLGLLSNPLRDRFGIPMRLNFYNT 181

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
            +LK ++ R +KL  + +TD  + EIA RSRGTPRIA RLLRR+RDFA V     + +EI
Sbjct: 182 GELKKVLNRASKLLDIDLTDSGSEEIAKRSRGTPRIALRLLRRIRDFAAVDGKSRVDKEI 241

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           +D  L RL +D++G D  D RYL  IA N+ GGPVGIETI+A LSE RDA+E+ IEPY+I
Sbjct: 242 SDFGLNRLEVDRIGLDSNDYRYLKFIADNYNGGPVGIETIAAALSEQRDALEETIEPYLI 301

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           Q G +QRTPRGR++   A++HL + +P++
Sbjct: 302 QIGLLQRTPRGRVITIAAFEHLKMPVPNQ 330


>gi|15892456|ref|NP_360170.1| Holliday junction DNA helicase B [Rickettsia conorii str. Malish 7]
 gi|15619611|gb|AAL03071.1| holliday junction DNA helicase RuvB [Rickettsia conorii str. Malish
           7]
          Length = 354

 Score =  405 bits (1042), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 196/329 (59%), Positives = 252/329 (76%), Gaps = 1/329 (0%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            +LS   S+ D ++ + RP  L+EF GQ +   NL VFI+AAK+R E LDH LF GPPGL
Sbjct: 15  NILSPEKSENDQELPI-RPSYLQEFVGQQQIKENLSVFIKAAKSRNEHLDHTLFYGPPGL 73

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLA++++ E+G NF+STSGP I K  DLAA+LTNLE  DVLFIDEIHRL+  VEE+L
Sbjct: 74  GKTTLAKIISNEIGGNFKSTSGPAILKVADLAAILTNLEKNDVLFIDEIHRLNTAVEEVL 133

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           YPAMEDF+LD+++GEG +ARSVKI L +FTLI ATTR+GLL+NPL+DRFGIP+RLNFY  
Sbjct: 134 YPAMEDFELDIIIGEGSAARSVKITLPKFTLIGATTRLGLLSNPLRDRFGIPMRLNFYNT 193

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
            +LK ++ R +KL  + +TD  + EIA RSRGTPRIA RLLRR+RDFA V     + +EI
Sbjct: 194 GELKKVLNRASKLLDIDLTDSGSEEIAKRSRGTPRIALRLLRRIRDFAAVDGKSRVDKEI 253

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           +D  L RL +D++G D  D RYL  IA N+ GGPVGIETI+A LSE RDA+E+ IEPY+I
Sbjct: 254 SDFGLNRLEVDRIGLDSNDYRYLKFIADNYNGGPVGIETIAAALSEQRDALEETIEPYLI 313

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           Q G +QRTPRGR++   A++HL + +P++
Sbjct: 314 QIGLLQRTPRGRVITIAAFEHLKMPVPNQ 342


>gi|298368822|ref|ZP_06980140.1| holliday junction DNA helicase RuvB [Neisseria sp. oral taxon 014
           str. F0314]
 gi|298282825|gb|EFI24312.1| holliday junction DNA helicase RuvB [Neisseria sp. oral taxon 014
           str. F0314]
          Length = 343

 Score =  405 bits (1041), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 199/319 (62%), Positives = 244/319 (76%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           SQE+     LRP+TL ++ GQ +A   L +FI+AAK R EALDH L  GPPGLGKTTLA 
Sbjct: 23  SQEELLERALRPKTLNDYIGQTKAKDQLAIFIQAAKKRGEALDHTLLFGPPGLGKTTLAH 82

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++A+ELGVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+
Sbjct: 83  IIAKELGVNLRQTSGPVLERAGDLAALLTNLEPHDVLFIDEIHRLSPVVEEILYPALEDY 142

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           QLD+M+GEGP+ARSVKI+L  FTLI ATTR G+LTNPL+DRFGI  RL FYE +DL TIV
Sbjct: 143 QLDIMIGEGPAARSVKIDLPPFTLIGATTRAGMLTNPLRDRFGIVSRLEFYEDKDLATIV 202

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R A+L  L +  + A E+A RSRGTPRIA RLLRRVRD+A+V +   I  EIADAAL+ 
Sbjct: 203 SRSAQLLQLNMGSDGAMEVAKRSRGTPRIANRLLRRVRDYADVKNNGVIDAEIADAALIM 262

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D  G D +D ++L  I   FGGGPVG++ I+A + E  D IED+IEPY+IQQGF+QR
Sbjct: 263 LDVDAQGLDVMDRKFLEAILHKFGGGPVGLDNIAAAIGESTDTIEDVIEPYLIQQGFLQR 322

Query: 313 TPRGRLLMPIAWQHLGIDI 331
           TPRGR+    ++ H G+ I
Sbjct: 323 TPRGRVATERSYLHFGLKI 341


>gi|329113835|ref|ZP_08242606.1| Holliday junction ATP-dependent DNA helicase RuvB [Acetobacter
           pomorum DM001]
 gi|326696845|gb|EGE48515.1| Holliday junction ATP-dependent DNA helicase RuvB [Acetobacter
           pomorum DM001]
          Length = 358

 Score =  405 bits (1040), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 206/321 (64%), Positives = 247/321 (76%), Gaps = 2/321 (0%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           +ED   S LRP+TL +FTGQ  +  NL +FI+AAK R +ALDHVL  GPPGLGKTTLAQ+
Sbjct: 17  EEDVGESTLRPQTLHDFTGQKASRENLSIFIKAAKQRGDALDHVLLHGPPGLGKTTLAQI 76

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           VARELGV FR+TSGPVI +AGDLAA+LTNL+ RDVLFIDEIHRL   +EEILYPAMEDFQ
Sbjct: 77  VARELGVGFRATSGPVIQRAGDLAAILTNLQPRDVLFIDEIHRLQPAIEEILYPAMEDFQ 136

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           LDL++GEGP+ARSV+I+L  FTL+AATTR GLL  PL+DRFGIP+RL FY  E+L  IV 
Sbjct: 137 LDLIIGEGPAARSVRIDLPPFTLVAATTRAGLLATPLRDRFGIPLRLVFYTPEELCKIVA 196

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA--HAKTITREIADAALL 251
           RGA+    A+T   A EIA RSRGTPRIAGRLLRRVRDFA V       +  E+ADAAL 
Sbjct: 197 RGAEKLDFALTQGGAMEIARRSRGTPRIAGRLLRRVRDFASVTVPVGVPVETEVADAALK 256

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
           RL +D +G D +D RYL  IA    GGPVG+ET++A L+E RD +ED+IEPY+IQ+G + 
Sbjct: 257 RLEVDALGLDAMDRRYLRRIAEYHHGGPVGVETLAAALAESRDTLEDVIEPYLIQEGLVL 316

Query: 312 RTPRGRLLMPIAWQHLGIDIP 332
           RT RGR+L    W+HLG+  P
Sbjct: 317 RTTRGRVLGERGWRHLGLTPP 337


>gi|157962183|ref|YP_001502217.1| Holliday junction DNA helicase RuvB [Shewanella pealeana ATCC
           700345]
 gi|189046050|sp|A8H545|RUVB_SHEPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|157847183|gb|ABV87682.1| Holliday junction DNA helicase RuvB [Shewanella pealeana ATCC
           700345]
          Length = 337

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 200/335 (59%), Positives = 255/335 (76%), Gaps = 3/335 (0%)

Query: 1   MMDREGLLSRNVSQED---ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M++ + L+  N+ + D   A    +RP+ L+E+TGQ +  + LK+FI+AA+ R EALDH+
Sbjct: 1   MIEADRLIQPNIIERDEIEAVDRAMRPKMLDEYTGQDDTRAQLKIFIQAAQKRGEALDHM 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTLA +VA E+GVN +STSGPV+ KAGDLAALLTNLE  DVLFIDEIHRL
Sbjct: 61  LIYGPPGLGKTTLAMIVANEMGVNIKSTSGPVLEKAGDLAALLTNLEPNDVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           S +VEEILYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ ATTR G LT+PL+ RFGIP
Sbjct: 121 SPVVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGALTSPLRARFGIP 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
           +RL FY ++DL +IV R AK+  LA+ DE A EIA RSRGTPRIA RLLRRVRDFAEV H
Sbjct: 181 LRLEFYNVKDLSSIVTRSAKVMDLAIDDEGAIEIARRSRGTPRIANRLLRRVRDFAEVKH 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
              +T+ IA+ AL  L +D  GFD +D + L  I   F GGPVG++ ++A + E R+ IE
Sbjct: 241 RGEVTKIIAEEALDMLDVDAEGFDYMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETIE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           D++EP++IQQGFIQRTPRGR+  P A+ H  I  P
Sbjct: 301 DVLEPFLIQQGFIQRTPRGRIATPRAYSHFNIIQP 335


>gi|258543668|ref|YP_003189101.1| Holliday junction DNA helicase RuvB [Acetobacter pasteurianus IFO
           3283-01]
 gi|256634746|dbj|BAI00722.1| Holliday junction DNA helicase RuvB [Acetobacter pasteurianus IFO
           3283-01]
 gi|256637802|dbj|BAI03771.1| Holliday junction DNA helicase RuvB [Acetobacter pasteurianus IFO
           3283-03]
 gi|256640856|dbj|BAI06818.1| Holliday junction DNA helicase RuvB [Acetobacter pasteurianus IFO
           3283-07]
 gi|256643911|dbj|BAI09866.1| Holliday junction DNA helicase RuvB [Acetobacter pasteurianus IFO
           3283-22]
 gi|256646966|dbj|BAI12914.1| Holliday junction DNA helicase RuvB [Acetobacter pasteurianus IFO
           3283-26]
 gi|256650019|dbj|BAI15960.1| Holliday junction DNA helicase RuvB [Acetobacter pasteurianus IFO
           3283-32]
 gi|256653009|dbj|BAI18943.1| Holliday junction DNA helicase RuvB [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256656063|dbj|BAI21990.1| Holliday junction DNA helicase RuvB [Acetobacter pasteurianus IFO
           3283-12]
          Length = 358

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 206/321 (64%), Positives = 247/321 (76%), Gaps = 2/321 (0%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           +ED   S LRP+TL +FTGQ  +  NL +FI+AAK R +ALDHVL  GPPGLGKTTLAQ+
Sbjct: 17  EEDVGESTLRPQTLHDFTGQKASRENLSIFIKAAKQRGDALDHVLLHGPPGLGKTTLAQI 76

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           VARELGV FR+TSGPVI +AGDLAA+LTNL+ RDVLFIDEIHRL   +EEILYPAMEDFQ
Sbjct: 77  VARELGVGFRATSGPVIQRAGDLAAILTNLQPRDVLFIDEIHRLQPAIEEILYPAMEDFQ 136

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           LDL++GEGP+ARSV+I+L  FTL+AATTR GLL  PL+DRFGIP+RL FY  E+L  IV 
Sbjct: 137 LDLIIGEGPAARSVRIDLPPFTLVAATTRAGLLATPLRDRFGIPLRLVFYTPEELCKIVA 196

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA--HAKTITREIADAALL 251
           RGA+    A+T   A EIA RSRGTPRIAGRLLRRVRDFA V       +  E+ADAAL 
Sbjct: 197 RGAEKLDFALTLGGAMEIARRSRGTPRIAGRLLRRVRDFASVTVPAGVPVEAEVADAALK 256

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
           RL +D +G D +D RYL  IA    GGPVG+ET++A L+E RD +ED+IEPY+IQ+G + 
Sbjct: 257 RLEVDALGLDAMDRRYLRRIAEYHHGGPVGVETLAAALAESRDTLEDVIEPYLIQEGLVL 316

Query: 312 RTPRGRLLMPIAWQHLGIDIP 332
           RT RGR+L    W+HLG+  P
Sbjct: 317 RTTRGRVLGERGWRHLGLTPP 337


>gi|95931134|ref|ZP_01313859.1| Holliday junction DNA helicase RuvB [Desulfuromonas acetoxidans DSM
           684]
 gi|95132824|gb|EAT14498.1| Holliday junction DNA helicase RuvB [Desulfuromonas acetoxidans DSM
           684]
          Length = 341

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 195/327 (59%), Positives = 256/327 (78%), Gaps = 2/327 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M DR  L+S  +S ED   + LRPRTL E+ GQ +A  NL+VFI+AA  R+EALDHVLF 
Sbjct: 1   MTDR--LISAELSDEDNIDNPLRPRTLNEYIGQEKAKENLEVFIQAALNRSEALDHVLFY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A E+GV+ +STSGPVI KAGDLAA+LTNLE+ DVLFIDEIHRLS +
Sbjct: 59  GPPGLGKTTLANIIASEMGVSIKSTSGPVIEKAGDLAAILTNLEEGDVLFIDEIHRLSPV 118

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILYPAMED+Q+D+M+G+GPSAR++K+++ RFTL+ ATTR GLL++PL+DRFG+  RL
Sbjct: 119 VEEILYPAMEDYQIDIMIGQGPSARTIKLDIPRFTLVGATTRAGLLSSPLRDRFGVICRL 178

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY    L  IV+R A + G+ + ++ A EIA RSRGTPRIA RLLRRVRDFA+V +  +
Sbjct: 179 QFYTHAQLAVIVKRSASILGVPIDEKGALEIARRSRGTPRIANRLLRRVRDFAQVQNDGS 238

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I  +IAD AL RL +DK+GFD +D   L  I   F GGPVG++T++A + E +D IE++I
Sbjct: 239 INCDIADTALTRLEVDKIGFDHMDCLMLQTIMDKFSGGPVGLDTLAAAIGEEKDTIEEVI 298

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHL 327
           EP+++QQG+I RTPRGR++  +A++H 
Sbjct: 299 EPFLLQQGYINRTPRGRMVTELAYRHF 325


>gi|254374303|ref|ZP_04989785.1| holliday junction DNA helicase RuvB [Francisella novicida
           GA99-3548]
 gi|151572023|gb|EDN37677.1| holliday junction DNA helicase RuvB [Francisella novicida
           GA99-3548]
          Length = 348

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 197/335 (58%), Positives = 252/335 (75%), Gaps = 3/335 (0%)

Query: 1   MMDREGLLSRNVSQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M++ + ++S N +Q + +  +   +RP+TL E+ GQ      +++FI+AAKAR +ALDH 
Sbjct: 1   MIETDRIISANTTQTNDENVIDRAIRPKTLAEYEGQPAVREQMEIFIQAAKARKDALDHT 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTL+ ++A E+GV  + TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRL
Sbjct: 61  LIFGPPGLGKTTLSNIIANEMGVELKQTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           S +VEEILYPAMED+QLD+M+GEGP+ARS+KI+L  FTL+ ATTR GLLT+PL+DRFGI 
Sbjct: 121 SPVVEEILYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLVGATTRAGLLTSPLRDRFGII 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            RL FY I+DL  IV R AKL  L +T + A EIA RSRGTPRIA RLLRRVRD+A+V  
Sbjct: 181 QRLEFYSIDDLSKIVYRSAKLLNLDITTDGAIEIAKRSRGTPRIANRLLRRVRDYAQVKG 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
           +  I  EIAD AL  L +D +GFD +D RYL  +   F GGPVG++T+SA LSE +  IE
Sbjct: 241 SGVICFEIADKALSMLKVDPIGFDHMDHRYLLTLMEKFAGGPVGLDTMSAALSEEKGTIE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           D+IEPY+IQQG+I RT RGR+   +A+ H  + IP
Sbjct: 301 DVIEPYLIQQGYIMRTARGRIATLLAYNHFKLKIP 335


>gi|146312075|ref|YP_001177149.1| Holliday junction DNA helicase RuvB [Enterobacter sp. 638]
 gi|167012671|sp|A4WBL8|RUVB_ENT38 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|145318951|gb|ABP61098.1| Holliday junction DNA helicase subunit RuvB [Enterobacter sp. 638]
          Length = 336

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 200/334 (59%), Positives = 253/334 (75%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S   +Q ED     +RP+ LEE+ GQ +  S +++FI+AAK R EALDH+L 
Sbjct: 1   MIEADRLISAASNQPEDVVDRAIRPKLLEEYIGQPQVRSQMEIFIQAAKLRGEALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IV R A+  GL ++DE A E+A RSRGTPRIA RLLRRVRDFAEV H  
Sbjct: 181 LEFYQVPDLQYIVGRSARFMGLELSDEGAFEVAKRSRGTPRIANRLLRRVRDFAEVKHDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           TI+ ++A  AL  L +D  GFD +D + L  I   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 TISLDVAAQALDMLNVDAEGFDYMDRKLLLAILDKFFGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +EPY+IQQGF+QRTPRGR+    AW H GI  P 
Sbjct: 301 LEPYLIQQGFLQRTPRGRMATVRAWNHFGITPPE 334


>gi|148261886|ref|YP_001236013.1| Holliday junction DNA helicase B [Acidiphilium cryptum JF-5]
 gi|326405390|ref|YP_004285472.1| Holliday junction ATP-dependent DNA helicase RuvB [Acidiphilium
           multivorum AIU301]
 gi|146403567|gb|ABQ32094.1| Holliday junction DNA helicase RuvB [Acidiphilium cryptum JF-5]
 gi|325052252|dbj|BAJ82590.1| Holliday junction ATP-dependent DNA helicase RuvB [Acidiphilium
           multivorum AIU301]
          Length = 347

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 209/326 (64%), Positives = 250/326 (76%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           LLS     ED   + LRP+TL EFTGQ  +  NL +FI AA+ R E+LDHVL  GPPGLG
Sbjct: 9   LLSGARDAEDGPEAALRPQTLAEFTGQKASRENLAIFIAAARGRGESLDHVLLHGPPGLG 68

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTTLAQ++ARE+GV FR+TSGP+I K+GDLAA+LTNL+ RDVLFIDEIHRL   +EE+LY
Sbjct: 69  KTTLAQIIAREMGVGFRATSGPIIQKSGDLAAILTNLQPRDVLFIDEIHRLQPSIEEVLY 128

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           PAMEDF LDL++GEGP ARSV+I+L RFTLI ATTR GLL NPL+DRFGIP+RL FY  E
Sbjct: 129 PAMEDFVLDLIIGEGPGARSVRIDLPRFTLIGATTRSGLLANPLRDRFGIPLRLVFYTPE 188

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +L  IV R A L  + +T + A EIA RSRGTPRIAGRL RRVRDFA VA    + R  A
Sbjct: 189 ELTLIVTRAATLLEMDITADGAAEIARRSRGTPRIAGRLTRRVRDFAAVAGTARVDRAAA 248

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           DAAL RL +D+ G D +D RYL  IA +  GGPVGIET++A LSEPRD +ED+IEP++IQ
Sbjct: 249 DAALTRLDVDQRGLDAMDRRYLRRIAEHHNGGPVGIETLAAALSEPRDTLEDVIEPFLIQ 308

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIP 332
           +GF+ RTPRGR+L   AW HLG+  P
Sbjct: 309 EGFVIRTPRGRMLGREAWAHLGLLPP 334


>gi|56708102|ref|YP_169998.1| Holliday junction DNA helicase RuvB [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|89256412|ref|YP_513774.1| Holliday junction DNA helicase RuvB [Francisella tularensis subsp.
           holarctica LVS]
 gi|110670573|ref|YP_667130.1| Holliday junction DNA helicase RuvB [Francisella tularensis subsp.
           tularensis FSC198]
 gi|115314854|ref|YP_763577.1| Holliday junction DNA helicase RuvB [Francisella tularensis subsp.
           holarctica OSU18]
 gi|118497483|ref|YP_898533.1| Holliday junction DNA helicase B [Francisella tularensis subsp.
           novicida U112]
 gi|134301913|ref|YP_001121882.1| Holliday junction DNA helicase RuvB [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|156502503|ref|YP_001428568.1| Holliday junction DNA helicase RuvB [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|167010434|ref|ZP_02275365.1| holliday junction DNA helicase RuvB [Francisella tularensis subsp.
           holarctica FSC200]
 gi|195536176|ref|ZP_03079183.1| holliday junction DNA helicase RuvB [Francisella tularensis subsp.
           novicida FTE]
 gi|254367748|ref|ZP_04983769.1| holliday junction DNA helicase subunit B [Francisella tularensis
           subsp. holarctica 257]
 gi|254369382|ref|ZP_04985394.1| holliday junction DNA helicase [Francisella tularensis subsp.
           holarctica FSC022]
 gi|254370586|ref|ZP_04986591.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254372835|ref|ZP_04988324.1| crossover junction endodeoxyribonuclease [Francisella tularensis
           subsp. novicida GA99-3549]
 gi|290953835|ref|ZP_06558456.1| Holliday junction DNA helicase RuvB [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295312846|ref|ZP_06803578.1| Holliday junction DNA helicase RuvB [Francisella tularensis subsp.
           holarctica URFT1]
 gi|81820774|sp|Q5NG44|RUVB_FRATT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|122325131|sp|Q0BLU4|RUVB_FRATO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|123094512|sp|Q2A3C8|RUVB_FRATH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|123359475|sp|Q14HJ6|RUVB_FRAT1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|166231493|sp|A7NCA9|RUVB_FRATF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|166231494|sp|A0Q6B4|RUVB_FRATN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|166231495|sp|A4IXW0|RUVB_FRATW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|54114219|gb|AAV29743.1| NT02FT0210 [synthetic construct]
 gi|56604594|emb|CAG45646.1| holliday junction DNA helicase, subunit B [Francisella tularensis
           subsp. tularensis SCHU S4]
 gi|89144243|emb|CAJ79516.1| holliday junction DNA helicase, subunit B [Francisella tularensis
           subsp. holarctica LVS]
 gi|110320906|emb|CAL09029.1| holliday junction DNA helicase, subunit B [Francisella tularensis
           subsp. tularensis FSC198]
 gi|115129753|gb|ABI82940.1| crossover junction endodeoxyribonuclease [Francisella tularensis
           subsp. holarctica OSU18]
 gi|118423389|gb|ABK89779.1| holliday junction DNA helicase, subunit B [Francisella novicida
           U112]
 gi|134049690|gb|ABO46761.1| holliday junction DNA helicase RuvB [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134253559|gb|EBA52653.1| holliday junction DNA helicase subunit B [Francisella tularensis
           subsp. holarctica 257]
 gi|151568829|gb|EDN34483.1| hypothetical protein FTBG_00373 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|151570562|gb|EDN36216.1| crossover junction endodeoxyribonuclease [Francisella novicida
           GA99-3549]
 gi|156253106|gb|ABU61612.1| holliday junction DNA helicase [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|157122332|gb|EDO66472.1| holliday junction DNA helicase [Francisella tularensis subsp.
           holarctica FSC022]
 gi|194372653|gb|EDX27364.1| holliday junction DNA helicase RuvB [Francisella tularensis subsp.
           novicida FTE]
 gi|282159302|gb|ADA78693.1| Holliday junction DNA helicase B [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 348

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 197/335 (58%), Positives = 252/335 (75%), Gaps = 3/335 (0%)

Query: 1   MMDREGLLSRNVSQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M++ + ++S N +Q + +  +   +RP+TL E+ GQ      +++FI+AAKAR +ALDH 
Sbjct: 1   MIETDRIISANTAQTNDENVIDRAIRPKTLAEYEGQPAVREQMEIFIQAAKARKDALDHT 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTL+ ++A E+GV  + TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRL
Sbjct: 61  LIFGPPGLGKTTLSNIIANEMGVELKQTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           S +VEEILYPAMED+QLD+M+GEGP+ARS+KI+L  FTL+ ATTR GLLT+PL+DRFGI 
Sbjct: 121 SPVVEEILYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLVGATTRAGLLTSPLRDRFGII 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            RL FY I+DL  IV R AKL  L +T + A EIA RSRGTPRIA RLLRRVRD+A+V  
Sbjct: 181 QRLEFYSIDDLSKIVYRSAKLLNLDITTDGAMEIAKRSRGTPRIANRLLRRVRDYAQVKG 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
           +  I  EIAD AL  L +D +GFD +D RYL  +   F GGPVG++T+SA LSE +  IE
Sbjct: 241 SGVICFEIADKALSMLKVDPVGFDHMDHRYLLTLMEKFAGGPVGLDTMSAALSEEKGTIE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           D+IEPY+IQQG+I RT RGR+   +A+ H  + IP
Sbjct: 301 DVIEPYLIQQGYIMRTARGRIATLLAYNHFKLKIP 335


>gi|225075205|ref|ZP_03718404.1| hypothetical protein NEIFLAOT_00205 [Neisseria flavescens
           NRL30031/H210]
 gi|224953380|gb|EEG34589.1| hypothetical protein NEIFLAOT_00205 [Neisseria flavescens
           NRL30031/H210]
          Length = 343

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 199/324 (61%), Positives = 248/324 (76%), Gaps = 1/324 (0%)

Query: 9   SRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           ++N+S QE+     LRP+TL+++ GQ +A   L +FI+AAK R EALDH L  GPPGLGK
Sbjct: 18  AQNISAQEELLERALRPKTLDDYIGQDKAKEQLAIFIQAAKKRGEALDHTLLFGPPGLGK 77

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127
           TTLA ++A+ELGVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VEEILYP
Sbjct: 78  TTLAHIIAKELGVNLRQTSGPVLERAGDLAALLTNLEPHDVLFIDEIHRLSPVVEEILYP 137

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           A+ED+QLD+M+GEGP+ARSVKI+L  FTL+ ATTR G+LTNPL+DRFGI  RL FY+ +D
Sbjct: 138 ALEDYQLDIMIGEGPAARSVKIDLPPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYQNKD 197

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           L TIV R A+L  L + DE A E+A RSRGTPRIA RLLRRVRD+A+V +   I  EIAD
Sbjct: 198 LATIVARSAQLLQLDMGDEGAMEVAKRSRGTPRIANRLLRRVRDYADVKNNGVIDAEIAD 257

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           AAL  L +D  G D +D ++L  I   F GGPVG+E ++A + E  D IED+IEPY+IQQ
Sbjct: 258 AALSMLDVDVQGLDVMDRKFLEAILHKFSGGPVGLENVAAAIGESTDTIEDVIEPYLIQQ 317

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDI 331
           GF+QRTPRGR+    A+ H G+ +
Sbjct: 318 GFLQRTPRGRVATERAYLHFGLKV 341


>gi|208779281|ref|ZP_03246627.1| holliday junction DNA helicase RuvB [Francisella novicida FTG]
 gi|208745081|gb|EDZ91379.1| holliday junction DNA helicase RuvB [Francisella novicida FTG]
 gi|332678175|gb|AEE87304.1| Holliday junction DNA helicase RuvB [Francisella cf. novicida Fx1]
          Length = 348

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 197/335 (58%), Positives = 252/335 (75%), Gaps = 3/335 (0%)

Query: 1   MMDREGLLSRNVSQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M++ + ++S N +Q + +  +   +RP+TL E+ GQ      +++FI+AAKAR +ALDH 
Sbjct: 1   MIETDRIISANTTQTNDENVIDRAIRPKTLAEYEGQPAVREQMEIFIQAAKARKDALDHT 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTL+ ++A E+GV  + TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRL
Sbjct: 61  LIFGPPGLGKTTLSNIIANEMGVELKQTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           S +VEEILYPAMED+QLD+M+GEGP+ARS+KI+L  FTL+ ATTR GLLT+PL+DRFGI 
Sbjct: 121 SPVVEEILYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLVGATTRAGLLTSPLRDRFGII 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            RL FY I+DL  IV R AKL  L +T + A EIA RSRGTPRIA RLLRRVRD+A+V  
Sbjct: 181 QRLEFYSIDDLSKIVYRSAKLLNLDITTDGAMEIAKRSRGTPRIANRLLRRVRDYAQVKG 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
           +  I  EIAD AL  L +D +GFD +D RYL  +   F GGPVG++T+SA LSE +  IE
Sbjct: 241 SGVICFEIADKALSMLKVDPVGFDHMDHRYLLTLMEKFAGGPVGLDTMSAALSEEKGTIE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           D+IEPY+IQQG+I RT RGR+   +A+ H  + IP
Sbjct: 301 DVIEPYLIQQGYIMRTARGRIATLLAYNHFKLKIP 335


>gi|328676067|gb|AEB28742.1| Holliday junction DNA helicase RuvB [Francisella cf. novicida 3523]
          Length = 348

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 198/335 (59%), Positives = 251/335 (74%), Gaps = 3/335 (0%)

Query: 1   MMDREGLLSRNVSQ---EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M++ + ++S N +Q   E+     +RP+TL E+ GQ      +++FI+AAKAR +ALDH 
Sbjct: 1   MIETDRIISANTAQTSDENVIDRAIRPKTLAEYEGQPAVREQMEIFIQAAKARKDALDHT 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTL+ ++A E+GV  + TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRL
Sbjct: 61  LIFGPPGLGKTTLSNIIANEMGVELKQTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           S +VEEILYPAMED+QLD+M+GEGP+ARS+KI+L  FTL+ ATTR GLLT+PL+DRFGI 
Sbjct: 121 SPVVEEILYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLVGATTRAGLLTSPLRDRFGII 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            RL FY I+DL  IV R AKL  L +T + A EIA RSRGTPRIA RLLRRVRD+A+V  
Sbjct: 181 QRLEFYSIDDLSKIVYRSAKLLNLDITTDGAMEIAKRSRGTPRIANRLLRRVRDYAQVKG 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
           +  I  EIAD AL  L +D +GFD +D RYL  +   F GGPVG++T+SA LSE +  IE
Sbjct: 241 SGVICFEIADKALSMLKVDPVGFDHMDHRYLLTLMEKFAGGPVGLDTMSAALSEEKGTIE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           D+IEPY+IQQG+I RT RGR+   +A+ H  + IP
Sbjct: 301 DVIEPYLIQQGYIMRTARGRIATLLAYNHFKLKIP 335


>gi|284799750|ref|ZP_05984763.2| holliday junction DNA helicase RuvB [Neisseria subflava NJ9703]
 gi|284797037|gb|EFC52384.1| holliday junction DNA helicase RuvB [Neisseria subflava NJ9703]
          Length = 351

 Score =  402 bits (1034), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 199/324 (61%), Positives = 248/324 (76%), Gaps = 1/324 (0%)

Query: 9   SRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           ++N+S QE+     LRP+TL+++ GQ +A   L +FI+AAK R EALDH L  GPPGLGK
Sbjct: 26  AQNISAQEELLERALRPKTLDDYIGQDKAKEQLAIFIQAAKKRGEALDHTLLFGPPGLGK 85

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127
           TTLA ++A+ELGVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VEEILYP
Sbjct: 86  TTLAHIIAKELGVNLRQTSGPVLERAGDLAALLTNLEPHDVLFIDEIHRLSPVVEEILYP 145

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           A+ED+QLD+M+GEGP+ARSVKI+L  FTL+ ATTR G+LTNPL+DRFGI  RL FY+ +D
Sbjct: 146 ALEDYQLDIMIGEGPAARSVKIDLPPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYQNKD 205

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           L TIV R A+L  L + DE A E+A RSRGTPRIA RLLRRVRD+A+V +   I  EIAD
Sbjct: 206 LATIVARSAQLLQLDMGDEGAMEVAKRSRGTPRIANRLLRRVRDYADVKNNGVIDAEIAD 265

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           AAL  L +D  G D +D ++L  I   F GGPVG+E ++A + E  D IED+IEPY+IQQ
Sbjct: 266 AALSMLDVDGQGLDVMDRKFLEAILHKFSGGPVGLENVAAAIGESTDTIEDVIEPYLIQQ 325

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDI 331
           GF+QRTPRGR+    A+ H G+ +
Sbjct: 326 GFLQRTPRGRVATERAYLHFGLKV 349


>gi|325128351|gb|EGC51235.1| Holliday junction DNA helicase RuvB [Neisseria meningitidis N1568]
          Length = 343

 Score =  402 bits (1033), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 199/319 (62%), Positives = 246/319 (77%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           +QE+     LRP+TL+++ GQ +A   L +FI+AAK R EALDHVL  GPPGLGKTTLA 
Sbjct: 23  AQEELLERALRPKTLDDYIGQDKAKEQLAIFIQAAKKRGEALDHVLLFGPPGLGKTTLAH 82

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++A+ELGVN R TSGPV+ +AGDLAALLTNL+  DVLFIDEIHRLS +VEEILYPA+ED+
Sbjct: 83  IIAKELGVNLRQTSGPVLERAGDLAALLTNLDPHDVLFIDEIHRLSPVVEEILYPALEDY 142

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           +LD+M+GEGP+ARSVKINL  FTLI ATTR G+LTNPL+DRFGI  RL FYE  DL TIV
Sbjct: 143 RLDIMIGEGPAARSVKINLPPFTLIGATTRAGMLTNPLRDRFGIVSRLEFYENRDLTTIV 202

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R A+L  L +++E A EIA RSRGTPRIA RLLRRVRDFA+V +  TI   IADAAL  
Sbjct: 203 SRSAQLLQLDMSEEGAEEIAKRSRGTPRIANRLLRRVRDFADVKNNGTIDGGIADAALSM 262

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D  G D +D ++L  +   FGGGPVG++ ++A + E  D IED+IEPY+IQQGF+QR
Sbjct: 263 LDVDAQGLDVMDRKFLEAVLHKFGGGPVGLDNVAAAIGESTDTIEDVIEPYLIQQGFLQR 322

Query: 313 TPRGRLLMPIAWQHLGIDI 331
           TPRGR+    A+ H G+ +
Sbjct: 323 TPRGRMATERAYLHFGLPV 341


>gi|114570972|ref|YP_757652.1| Holliday junction DNA helicase RuvB [Maricaulis maris MCS10]
 gi|122315335|sp|Q0ALX9|RUVB_MARMM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|114341434|gb|ABI66714.1| Holliday junction DNA helicase RuvB [Maricaulis maris MCS10]
          Length = 352

 Score =  402 bits (1033), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 208/329 (63%), Positives = 253/329 (76%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           E L+ R++   D     LRP +  +F GQ  A +NLKVF++AA+ R EALDHVL  GPPG
Sbjct: 11  ERLVDRDMQPGDGRDRALRPLSFSDFVGQKAAIANLKVFVDAARRREEALDHVLLSGPPG 70

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLAQ+VARE+GV FR+TSGPVIAKAGDLAA+LTNLE RDVLFIDEIHRL+  VEEI
Sbjct: 71  LGKTTLAQIVAREMGVGFRATSGPVIAKAGDLAAILTNLEPRDVLFIDEIHRLAPAVEEI 130

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPAMEDF LDL++GEGPSAR+V+I L  FTL+ ATTR GLL  PL+DRFG+P+RL FY+
Sbjct: 131 LYPAMEDFCLDLVIGEGPSARTVRIELPPFTLVGATTRAGLLATPLRDRFGVPVRLEFYD 190

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
             +L  IV R A   G+  T + A EIA R+RGTPR+AGRLLRRVRDFAE   A  I+  
Sbjct: 191 EAELGFIVTRAADKLGIGATPDGAREIARRARGTPRVAGRLLRRVRDFAEAEDADHISEA 250

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +AD AL RL +D +G D LD RYL  +  +FGGGPVG+ET++A L+E RDA+ED++EP++
Sbjct: 251 VADRALKRLEVDAIGLDSLDRRYLRALTESFGGGPVGVETLAAALAEARDALEDVVEPFL 310

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           IQQGFIQRTPRGRL    AW+HLG+  P 
Sbjct: 311 IQQGFIQRTPRGRLATGRAWEHLGLVPPQ 339


>gi|187931663|ref|YP_001891647.1| Holliday junction DNA helicase RuvB [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|238691563|sp|B2SGL0|RUVB_FRATM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|187712572|gb|ACD30869.1| holliday junction DNA helicase RuvB [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 348

 Score =  402 bits (1033), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 197/335 (58%), Positives = 250/335 (74%), Gaps = 3/335 (0%)

Query: 1   MMDREGLLSRNVSQ---EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M++ + ++S N +Q   E+     +RP+TL E+ GQ      +++FI+AAKAR +ALDH 
Sbjct: 1   MIETDRIISANTAQTNDENVIDKAIRPKTLAEYEGQPAVREQMEIFIQAAKARKDALDHT 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTL+ ++A E+GV  + TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRL
Sbjct: 61  LIFGPPGLGKTTLSNIIANEMGVELKQTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           S +VEEILYPAMED+QLD+M+GEGP+ARS+KI+L  FTL+ ATTR GLLT+PL+DRFGI 
Sbjct: 121 SPVVEEILYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLVGATTRAGLLTSPLRDRFGII 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            RL FY I+DL  IV R AKL  L +T + A EIA RSRGTPRIA RLLRRVRD+A+V  
Sbjct: 181 QRLEFYSIDDLSKIVYRSAKLLNLDITTDGAMEIAKRSRGTPRIANRLLRRVRDYAQVKG 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
           +  I  EI D AL  L +D +GFD +D RYL  +   F GGPVG++T+SA LSE +  IE
Sbjct: 241 SGVICFEIVDKALSMLKVDPVGFDHMDHRYLLTLMEKFAGGPVGLDTMSAALSEEKGTIE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           D+IEPY+IQQG+I RT RGR+   +A+ H  + IP
Sbjct: 301 DVIEPYLIQQGYIMRTARGRIATLLAYNHFKLKIP 335


>gi|329848092|ref|ZP_08263120.1| holliday junction DNA helicase RuvB [Asticcacaulis biprosthecum
           C19]
 gi|328843155|gb|EGF92724.1| holliday junction DNA helicase RuvB [Asticcacaulis biprosthecum
           C19]
          Length = 344

 Score =  402 bits (1032), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 198/324 (61%), Positives = 248/324 (76%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           S N  +E A    LRP+T ++F GQ    +NLKVF++AA  R EALDHVLF GPPGLGKT
Sbjct: 9   SDNDYEEKAQDRALRPQTFDDFVGQAPLKANLKVFVDAAAQRREALDHVLFYGPPGLGKT 68

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           TLAQ+VARELGV FR+TSGPV+AKAGDLAA+L+NLE  DVLFIDEIHRLS  VEEILYPA
Sbjct: 69  TLAQIVARELGVGFRATSGPVLAKAGDLAAILSNLEPNDVLFIDEIHRLSPAVEEILYPA 128

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           MED+ LDL++G+GP+AR+V+I+L+ FTL+ ATTR GLL+ PL+DRFGIP+RL FY  E+L
Sbjct: 129 MEDYVLDLIIGDGPAARTVRIDLAPFTLVGATTRAGLLSTPLRDRFGIPLRLEFYTPEEL 188

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             +V    +  G  ++++ A EIA RSRGTPR+AGRLLRRVRDFA       I ++ A  
Sbjct: 189 VRVVMGTGRKMGAPLSEDGALEIASRSRGTPRVAGRLLRRVRDFATSDGVALIDKKAASK 248

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL RL +D +G D  D RYL  +  N+GGGPVG+ET+SA ++E RDA+ED+IEPY++QQG
Sbjct: 249 ALARLEVDPVGLDHSDRRYLKALIENYGGGPVGLETLSAAIAEARDAVEDMIEPYLLQQG 308

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIP 332
           FIQRT RGR+    A+ HLG+  P
Sbjct: 309 FIQRTQRGRMACARAYLHLGLTPP 332


>gi|241758900|ref|ZP_04757013.1| holliday junction DNA helicase RuvB [Neisseria flavescens SK114]
 gi|241321108|gb|EER57321.1| holliday junction DNA helicase RuvB [Neisseria flavescens SK114]
          Length = 343

 Score =  402 bits (1032), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 198/324 (61%), Positives = 248/324 (76%), Gaps = 1/324 (0%)

Query: 9   SRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           ++N+S QE+     LRP+TL+++ GQ +A   L +FI+AAK R EALDH L  GPPGLGK
Sbjct: 18  AQNISAQEELLERALRPKTLDDYIGQDKAKEQLAIFIQAAKKRGEALDHTLLFGPPGLGK 77

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127
           TTLA ++A+ELGVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VEEILYP
Sbjct: 78  TTLAHIIAKELGVNLRQTSGPVLERAGDLAALLTNLEPHDVLFIDEIHRLSPVVEEILYP 137

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           A+ED+QLD+M+GEGP+ARSVKI+L  FTL+ ATTR G+LTNPL+DRFGI  RL FY+ +D
Sbjct: 138 ALEDYQLDIMIGEGPAARSVKIDLPPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYQNKD 197

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           L TIV R A+L  L + DE A E+A RSRGTPRIA RLLRRVRD+A+V +   I  EIA+
Sbjct: 198 LATIVARSAQLLQLDMGDEGAMEVAKRSRGTPRIANRLLRRVRDYADVKNNGVIDAEIAN 257

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           AAL  L +D  G D +D ++L  I   F GGPVG+E ++A + E  D IED+IEPY+IQQ
Sbjct: 258 AALSMLDVDGQGLDVMDRKFLEAILHKFSGGPVGLENVAAAIGESTDTIEDVIEPYLIQQ 317

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDI 331
           GF+QRTPRGR+    A+ H G+ +
Sbjct: 318 GFLQRTPRGRVATERAYLHFGLKV 341


>gi|113970240|ref|YP_734033.1| Holliday junction DNA helicase RuvB [Shewanella sp. MR-4]
 gi|123029677|sp|Q0HIZ1|RUVB_SHESM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|113884924|gb|ABI38976.1| Holliday junction DNA helicase RuvB [Shewanella sp. MR-4]
          Length = 334

 Score =  402 bits (1032), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 196/320 (61%), Positives = 248/320 (77%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           Q+D     +RP+ L+E+TGQ +  + LKVFI+AAK R EALDH+L  GPPGLGKTTLA +
Sbjct: 15  QDDVIDRAMRPKLLDEYTGQDDTRAQLKVFIQAAKNREEALDHMLIYGPPGLGKTTLAMI 74

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           VA E+GVN +STSGPV+ KAGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPAMED+Q
Sbjct: 75  VANEMGVNIKSTSGPVLEKAGDLAALLTNLEAGDVLFIDEIHRLSPVVEEILYPAMEDYQ 134

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           LD+M+GEGP+ARS+K++L  FTL+ ATTR G LT+PL+ RFGIP+RL FY ++DL TIV 
Sbjct: 135 LDIMIGEGPAARSIKLDLPPFTLVGATTRAGALTSPLRARFGIPLRLEFYNVKDLSTIVT 194

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A++ GLA+  E A EIA RSRGTPRIA RLLRRVRD+AEV H   +T+++A+ AL  L
Sbjct: 195 RSAQVMGLAIDSEGATEIAKRSRGTPRIANRLLRRVRDYAEVKHDGAVTKKVAEHALDLL 254

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D  GFD +D + L  I   F GGPVG++ ++A + E R+ IED++EP++IQQGFIQRT
Sbjct: 255 DVDGEGFDYMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETIEDVLEPFLIQQGFIQRT 314

Query: 314 PRGRLLMPIAWQHLGIDIPH 333
           PRGR+    A+ H G+  P 
Sbjct: 315 PRGRIATTRAYLHFGMIKPE 334


>gi|90022178|ref|YP_528005.1| Holliday junction DNA helicase RuvB [Saccharophagus degradans 2-40]
 gi|123395885|sp|Q21HN6|RUVB_SACD2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|89951778|gb|ABD81793.1| Holliday junction DNA helicase RuvB [Saccharophagus degradans 2-40]
          Length = 344

 Score =  402 bits (1032), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 194/333 (58%), Positives = 254/333 (76%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++++ ++  N    +  I   +RP++L+E+ GQ      +++FI AA+AR ++LDH L 
Sbjct: 1   MIEQDRIIDANAKSREEQIDRAVRPKSLKEYIGQPVVREQMEIFIGAAQARGDSLDHTLV 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A E+G + +STSGPV+ KAGDLAAL+TNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIIAAEMGADLKSTSGPVLEKAGDLAALMTNLEPGDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPAMEDFQLD+M+GEGP+ARS+K+ L  FTL+ ATTR GLLT+PL+DRFGI  R
Sbjct: 121 VVEEILYPAMEDFQLDIMIGEGPAARSIKLELPPFTLVGATTRAGLLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY IEDL  IV+R A L G+A+    A E+A RSRGTPRIA RLLRRVRD+AEV    
Sbjct: 181 LEFYNIEDLTHIVERSASLMGVAMDTPGAREVAKRSRGTPRIANRLLRRVRDYAEVKSDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           T+T +IAD AL  L +D+ GFD +D R L  +   FGGGPVG+++++A +SE RD IED+
Sbjct: 241 TVTAQIADLALNMLNVDEHGFDHMDRRLLLTLIEKFGGGPVGVDSLAAAISEERDTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           +EPY+IQQGFI RTPRGR+   +A+QH G+++P
Sbjct: 301 LEPYLIQQGFIMRTPRGRMATQLAYQHFGLNVP 333


>gi|117920402|ref|YP_869594.1| Holliday junction DNA helicase RuvB [Shewanella sp. ANA-3]
 gi|166231556|sp|A0KWL9|RUVB_SHESA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|117612734|gb|ABK48188.1| Holliday junction DNA helicase RuvB [Shewanella sp. ANA-3]
          Length = 334

 Score =  402 bits (1032), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 196/320 (61%), Positives = 248/320 (77%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           Q+D     +RP+ L+E+TGQ +  + LKVFI+AAK R EALDH+L  GPPGLGKTTLA +
Sbjct: 15  QDDVIDRAMRPKLLDEYTGQDDTRAQLKVFIQAAKNREEALDHMLIYGPPGLGKTTLAMI 74

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           VA E+GVN +STSGPV+ KAGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPAMED+Q
Sbjct: 75  VANEMGVNIKSTSGPVLEKAGDLAALLTNLEAGDVLFIDEIHRLSPVVEEILYPAMEDYQ 134

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           LD+M+GEGP+ARS+K++L  FTL+ ATTR G LT+PL+ RFGIP+RL FY ++DL TIV 
Sbjct: 135 LDIMIGEGPAARSIKLDLPPFTLVGATTRAGALTSPLRARFGIPLRLEFYNVKDLSTIVT 194

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A++ GLA+  E A EIA RSRGTPRIA RLLRRVRD+AEV H   +T+++A+ AL  L
Sbjct: 195 RSAQVMGLAIDSEGATEIAKRSRGTPRIANRLLRRVRDYAEVKHDGAVTQKVAEQALDLL 254

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D  GFD +D + L  I   F GGPVG++ ++A + E R+ IED++EP++IQQGFIQRT
Sbjct: 255 DVDGEGFDYMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETIEDVLEPFLIQQGFIQRT 314

Query: 314 PRGRLLMPIAWQHLGIDIPH 333
           PRGR+    A+ H G+  P 
Sbjct: 315 PRGRIATTRAYLHFGMIKPE 334


>gi|114047571|ref|YP_738121.1| Holliday junction DNA helicase RuvB [Shewanella sp. MR-7]
 gi|123326534|sp|Q0HUZ1|RUVB_SHESR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|113889013|gb|ABI43064.1| Holliday junction DNA helicase RuvB [Shewanella sp. MR-7]
          Length = 334

 Score =  401 bits (1031), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 196/320 (61%), Positives = 248/320 (77%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           Q+D     +RP+ L+E+TGQ +  + LKVFI+AAK R EALDH+L  GPPGLGKTTLA +
Sbjct: 15  QDDVIDRAMRPKLLDEYTGQDDTRAQLKVFIQAAKNREEALDHMLIYGPPGLGKTTLAMI 74

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           VA E+GVN +STSGPV+ KAGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPAMED+Q
Sbjct: 75  VANEMGVNIKSTSGPVLEKAGDLAALLTNLEAGDVLFIDEIHRLSPVVEEILYPAMEDYQ 134

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           LD+M+GEGP+ARS+K++L  FTL+ ATTR G LT+PL+ RFGIP+RL FY ++DL TIV 
Sbjct: 135 LDIMIGEGPAARSIKLDLPPFTLVGATTRAGALTSPLRARFGIPLRLEFYNVKDLSTIVS 194

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A++ GLA+  E A EIA RSRGTPRIA RLLRRVRD+AEV H   +T+++A+ AL  L
Sbjct: 195 RSAQVMGLAIDSEGAIEIAKRSRGTPRIANRLLRRVRDYAEVKHDGAVTKKVAEHALDLL 254

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D  GFD +D + L  I   F GGPVG++ ++A + E R+ IED++EP++IQQGFIQRT
Sbjct: 255 DVDGEGFDYMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETIEDVLEPFLIQQGFIQRT 314

Query: 314 PRGRLLMPIAWQHLGIDIPH 333
           PRGR+    A+ H G+  P 
Sbjct: 315 PRGRIATNRAYLHFGMIKPE 334


>gi|242239573|ref|YP_002987754.1| Holliday junction DNA helicase RuvB [Dickeya dadantii Ech703]
 gi|242131630|gb|ACS85932.1| Holliday junction DNA helicase RuvB [Dickeya dadantii Ech703]
          Length = 334

 Score =  401 bits (1031), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 194/330 (58%), Positives = 255/330 (77%), Gaps = 1/330 (0%)

Query: 1   MMDREGLLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S +V ++E+     +RP+TL E+ GQ + C  +++FI+AA+ R +ALDH+L 
Sbjct: 1   MIEADRLISPSVIAEEEVQDRAIRPKTLAEYVGQPKVCEQMEIFIQAARKRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAALLTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAALLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IVQR A+  GL +TDE A E+A RSRGTPRIA RLLRRVRDF+EV    
Sbjct: 181 LEFYQVADLQHIVQRSAQCLGLEMTDEGALEVARRSRGTPRIANRLLRRVRDFSEVKSDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT E+A  AL  LA+D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 VITMEVAMQALDMLAVDAEGFDYMDRKLLLAVIDKFMGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           +EPY+IQQGF+QRTPRGR+    A++H G+
Sbjct: 301 LEPYLIQQGFLQRTPRGRIATQHAYRHFGL 330


>gi|319638400|ref|ZP_07993162.1| Holliday junction ATP-dependent DNA helicase ruvB [Neisseria mucosa
           C102]
 gi|317400149|gb|EFV80808.1| Holliday junction ATP-dependent DNA helicase ruvB [Neisseria mucosa
           C102]
          Length = 351

 Score =  401 bits (1031), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 198/324 (61%), Positives = 248/324 (76%), Gaps = 1/324 (0%)

Query: 9   SRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           ++N+S QE+     LRP+TL+++ GQ +A   L +FI+AAK R EALDH L  GPPGLGK
Sbjct: 26  AQNISAQEELLERALRPKTLDDYIGQDKAKEQLAIFIQAAKKRGEALDHTLLFGPPGLGK 85

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127
           TTLA ++A+ELGVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VEEILYP
Sbjct: 86  TTLAHIIAKELGVNLRQTSGPVLERAGDLAALLTNLEPHDVLFIDEIHRLSPVVEEILYP 145

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           A+ED+QLD+M+GEGP+ARSVKI+L  FTL+ ATTR G+LTNPL+DRFGI  RL FY+ +D
Sbjct: 146 ALEDYQLDIMIGEGPAARSVKIDLPPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYQNKD 205

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           L TIV R A+L  L + +E A E+A RSRGTPRIA RLLRRVRD+A+V +   I  EIAD
Sbjct: 206 LATIVARSAQLLQLDMGEEGAMEVAKRSRGTPRIANRLLRRVRDYADVKNNGVIDAEIAD 265

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           AAL  L +D  G D +D ++L  I   F GGPVG+E ++A + E  D IED+IEPY+IQQ
Sbjct: 266 AALSMLDVDGQGLDVMDRKFLEAILHKFSGGPVGLENVAAAIGESTDTIEDVIEPYLIQQ 325

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDI 331
           GF+QRTPRGR+    A+ H G+ +
Sbjct: 326 GFLQRTPRGRVATERAYLHFGLKV 349


>gi|253997449|ref|YP_003049513.1| Holliday junction DNA helicase RuvB [Methylotenera mobilis JLW8]
 gi|253984128|gb|ACT48986.1| Holliday junction DNA helicase RuvB [Methylotenera mobilis JLW8]
          Length = 346

 Score =  401 bits (1030), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 197/334 (58%), Positives = 255/334 (76%), Gaps = 2/334 (0%)

Query: 1   MMDREGLLSRNV--SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M++ + L++ +V   QEDA    LRP+ L+E+ GQ +A + L++FI AA+ R+EALDHVL
Sbjct: 1   MIETDRLIAPDVVSPQEDALERALRPKVLDEYIGQEKARAQLEIFINAARGRSEALDHVL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA ++A+E+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS
Sbjct: 61  LFGPPGLGKTTLAHIIAKEMGVNMRQTSGPVLERAGDLAALLTNLEPNDVLFIDEIHRLS 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            +VEEILYPAMED++LD+M+GEGP+ARSV+++L  FTL+ ATTR G+LTNPL+DRFGI  
Sbjct: 121 PVVEEILYPAMEDYRLDIMIGEGPAARSVRLDLPPFTLVGATTRAGMLTNPLRDRFGIVS 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           RL FY  E+L  IVQR A L  + + D  A EIA RSRGTPRIA RLLRRVRD+A+V   
Sbjct: 181 RLEFYTSEELGRIVQRSAGLLDVEMVDSGALEIARRSRGTPRIANRLLRRVRDYAQVKAD 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             +   IADAAL  L +DK+GFD +D + L  +   FGGGPVG++ ++A + E RD IED
Sbjct: 241 GKVNANIADAALRMLDVDKLGFDVMDRKLLLAVLEKFGGGPVGLDNLAAAIGEERDTIED 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++EPY+IQQGF+ RTPRGR+    ++QH G+ +P
Sbjct: 301 VLEPYLIQQGFLMRTPRGRVATSQSYQHFGLPVP 334


>gi|24373976|ref|NP_718019.1| Holliday junction DNA helicase B [Shewanella oneidensis MR-1]
 gi|29336676|sp|Q8EEF3|RUVB_SHEON RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|24348422|gb|AAN55463.1|AE015683_10 Holliday junction DNA helicase RuvB [Shewanella oneidensis MR-1]
          Length = 334

 Score =  401 bits (1030), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 196/320 (61%), Positives = 247/320 (77%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           Q+D     +RP+ L+E+TGQ +  + LKVFI+AAK R EALDH+L  GPPGLGKTTLA +
Sbjct: 15  QDDVIDRAMRPKLLDEYTGQDDTRAQLKVFIQAAKNREEALDHMLIYGPPGLGKTTLAMI 74

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           VA E+GVN +STSGPV+ KAGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPAMED+Q
Sbjct: 75  VANEMGVNIKSTSGPVLEKAGDLAALLTNLEAGDVLFIDEIHRLSPVVEEILYPAMEDYQ 134

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           LD+M+GEGP+ARS+K++L  FTL+ ATTR G LT+PL+ RFGIP+RL FY ++DL TIV 
Sbjct: 135 LDIMIGEGPAARSIKLDLPPFTLVGATTRAGALTSPLRARFGIPLRLEFYNVKDLSTIVT 194

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A++ GLA+  E A EIA RSRGTPRIA RLLRRVRD+AEV H   +T+ +A+ AL  L
Sbjct: 195 RSAQVMGLAIDSEGATEIAKRSRGTPRIANRLLRRVRDYAEVQHDGAVTQNVAELALNLL 254

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D  GFD +D + L  I   F GGPVG++ ++A + E R+ IED++EP++IQQGFIQRT
Sbjct: 255 DVDGEGFDYMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETIEDVLEPFLIQQGFIQRT 314

Query: 314 PRGRLLMPIAWQHLGIDIPH 333
           PRGR+    A+ H G+  P 
Sbjct: 315 PRGRIATARAYVHFGMIKPE 334


>gi|116748436|ref|YP_845123.1| Holliday junction DNA helicase RuvB [Syntrophobacter fumaroxidans
           MPOB]
 gi|166231563|sp|A0LGY6|RUVB_SYNFM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|116697500|gb|ABK16688.1| Holliday junction DNA helicase RuvB [Syntrophobacter fumaroxidans
           MPOB]
          Length = 339

 Score =  401 bits (1030), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 196/310 (63%), Positives = 246/310 (79%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPR L+E+ GQ     NL VFIEAA+ RAE LDHVLF G PGLGKT+LA V++ ELGVN
Sbjct: 21  LRPRRLDEYVGQQTVKENLAVFIEAARQRAEPLDHVLFHGFPGLGKTSLATVISNELGVN 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            RSTSGPVI +AGDLAA+LTNLE  DVLFIDEIHRL+ +VEEILYPAMEDFQLD+++G+G
Sbjct: 81  MRSTSGPVIERAGDLAAILTNLEQGDVLFIDEIHRLNHVVEEILYPAMEDFQLDIIIGQG 140

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSAR++K++L  FTL+ ATTR GLL+ PL+DRFG+ +RL FY++++LK IV R A++ G+
Sbjct: 141 PSARTIKLDLPPFTLVGATTRAGLLSPPLRDRFGVTLRLEFYKVDELKLIVTRSARILGI 200

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            V  E A EIA RSRGTPRIA RLLRRVRD+AEV     ITRE+AD AL  L +D+ GFD
Sbjct: 201 RVDAEGALEIAKRSRGTPRIANRLLRRVRDYAEVRADGRITREVADLALRMLDVDEKGFD 260

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L+ I   + GGPVGIET+SA +SE RD +ED+ EPY+IQ+GF+ +TPRGRL   
Sbjct: 261 GMDRKILSTIIEKYDGGPVGIETLSAAVSEERDTLEDVYEPYLIQEGFLNKTPRGRLATR 320

Query: 322 IAWQHLGIDI 331
           +A++HLGI +
Sbjct: 321 LAYEHLGISV 330


>gi|209965100|ref|YP_002298015.1| holliday junction DNA helicase RuvB [Rhodospirillum centenum SW]
 gi|226698782|sp|B6ITI4|RUVB_RHOCS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|209958566|gb|ACI99202.1| holliday junction DNA helicase RuvB [Rhodospirillum centenum SW]
          Length = 362

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 204/317 (64%), Positives = 248/317 (78%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           DA  + +RP +L EF GQ +   NL VFI+AA+ R EALDHVL  GPPGLGKTTLAQ+VA
Sbjct: 19  DAAEASIRPLSLAEFIGQRQVRENLSVFIQAARGRKEALDHVLLFGPPGLGKTTLAQIVA 78

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           +EL V FR+TSGPVIAKAGDLAALLTNL+  DVLFIDEIHRLS  VEEILYPAMEDFQLD
Sbjct: 79  KELNVGFRATSGPVIAKAGDLAALLTNLQPHDVLFIDEIHRLSPAVEEILYPAMEDFQLD 138

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           L++GEGP+ARSV+I+L  FTL+ ATTR GL+T PL++RFGIP+R+ FYE E+L+ IV RG
Sbjct: 139 LIIGEGPAARSVRIDLPPFTLVGATTRSGLITRPLRERFGIPLRMQFYEPEELQLIVARG 198

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255
           A++ G+ +T E A EIA RSRGTPR+AGRLLRRVRD   VA    +    A  AL RL +
Sbjct: 199 ARILGMELTGEGALEIARRSRGTPRVAGRLLRRVRDICGVAGLAVVDAAAAGGALTRLEV 258

Query: 256 DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR 315
           D++GFD +D RYL  IA N+GGGPVG+ET+ A L E RD +E+ IEPY+IQQG +QRTPR
Sbjct: 259 DRLGFDAMDRRYLRCIADNYGGGPVGVETLGAALGEQRDVLEETIEPYLIQQGLLQRTPR 318

Query: 316 GRLLMPIAWQHLGIDIP 332
           GRLL    +++LG+  P
Sbjct: 319 GRLLTDSGYRYLGLPPP 335


>gi|241668499|ref|ZP_04756077.1| Holliday junction DNA helicase RuvB [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254877033|ref|ZP_05249743.1| holliday junction DNA helicase ruvB [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254843054|gb|EET21468.1| holliday junction DNA helicase ruvB [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
          Length = 348

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 193/335 (57%), Positives = 253/335 (75%), Gaps = 3/335 (0%)

Query: 1   MMDREGLLSRNVSQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M++ + ++S N  Q   + S+   +RP+TL E+ GQ      +++FI+AAK+R +ALDH 
Sbjct: 1   MIETDRIISANTVQTKDENSIDRAIRPKTLAEYEGQPAVREQMEIFIQAAKSRKDALDHT 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTL+ ++A E+ V  + TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRL
Sbjct: 61  LIFGPPGLGKTTLSNIIANEMEVELKQTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           S ++EEILYPAMED+QLD+M+GEGP+ARS+KI+L  FTL+ ATTR GLLT+PL+DRFGI 
Sbjct: 121 SPVIEEILYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLVGATTRAGLLTSPLRDRFGII 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            RL FY ++DL  IV R AKL  L +TD+ A EIA RSRGTPRIA RLLRRVRD+A+V  
Sbjct: 181 QRLEFYSVDDLAKIVYRSAKLLDLDITDDGANEIAKRSRGTPRIANRLLRRVRDYAQVKA 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
           +  I+ +IAD AL  L +D +GFD +D +YL  +   FGGGPVG++T++A LSE +  IE
Sbjct: 241 SGVISYDIADKALTMLKVDPVGFDHMDHKYLLTLMEKFGGGPVGLDTMAAALSEEKGTIE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           D+IEPY+IQQG+I RT RGR+   +A+ H  + IP
Sbjct: 301 DVIEPYLIQQGYIMRTARGRIATLLAYNHFKLKIP 335


>gi|304387495|ref|ZP_07369684.1| crossover junction ATP-dependent DNA helicase RuvB [Neisseria
           meningitidis ATCC 13091]
 gi|304338382|gb|EFM04503.1| crossover junction ATP-dependent DNA helicase RuvB [Neisseria
           meningitidis ATCC 13091]
 gi|308389336|gb|ADO31656.1| putative Holliday junction DNA helicase [Neisseria meningitidis
           alpha710]
 gi|325130310|gb|EGC53077.1| Holliday junction DNA helicase RuvB [Neisseria meningitidis
           OX99.30304]
 gi|325136271|gb|EGC58879.1| Holliday junction DNA helicase RuvB [Neisseria meningitidis M0579]
          Length = 343

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 198/319 (62%), Positives = 246/319 (77%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           +QE+     LRP+TL+++ GQ +A   L +FI+AAK R EALDHVL  GPPGLGKTTLA 
Sbjct: 23  AQEELLERALRPKTLDDYIGQHKAKEQLAIFIQAAKKRGEALDHVLLFGPPGLGKTTLAH 82

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++A+ELGVN R TSGPV+ +AGDLAALLTNL+  DVLFIDEIHRLS +VEEILYPA+ED+
Sbjct: 83  IIAKELGVNLRQTSGPVLERAGDLAALLTNLDPHDVLFIDEIHRLSPVVEEILYPALEDY 142

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           +LD+M+GEGP+ARSVKI+L  FTLI ATTR G+LTNPL+DRFGI  RL FYE  DL TIV
Sbjct: 143 RLDIMIGEGPAARSVKIDLPPFTLIGATTRAGMLTNPLRDRFGIVSRLEFYENRDLTTIV 202

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R A+L  L +++E A EIA RSRGTPRIA RLLRRVRDFA+V +  TI   IADAAL  
Sbjct: 203 SRSAQLLQLDMSEEGAEEIAKRSRGTPRIANRLLRRVRDFADVKNNGTIDGGIADAALSM 262

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D  G D +D ++L  +   FGGGPVG++ ++A + E  D IED+IEPY+IQQGF+QR
Sbjct: 263 LDVDAQGLDVMDRKFLEAVLHKFGGGPVGLDNVAAAIGESTDTIEDVIEPYLIQQGFLQR 322

Query: 313 TPRGRLLMPIAWQHLGIDI 331
           TPRGR+    A+ H G+ +
Sbjct: 323 TPRGRMATERAYLHFGLPV 341


>gi|74318229|ref|YP_315969.1| Holliday junction DNA helicase RuvB [Thiobacillus denitrificans
           ATCC 25259]
 gi|97190415|sp|Q3SGT3|RUVB_THIDA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|74057724|gb|AAZ98164.1| Holliday junction DNA helicase RuvB [Thiobacillus denitrificans
           ATCC 25259]
          Length = 341

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 194/319 (60%), Positives = 244/319 (76%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           QE+     LRPRTL E+ GQ +A   L++FI AA+ R+EALDHVL  GPPGLGKTTLA +
Sbjct: 16  QEEQIERALRPRTLAEYVGQAKAREQLEIFIHAARKRSEALDHVLLFGPPGLGKTTLAHI 75

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +ARE+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VEE+LYPA+EDFQ
Sbjct: 76  IAREMGVNLRQTSGPVLERAGDLAALLTNLEPHDVLFIDEIHRLSPVVEEVLYPALEDFQ 135

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           +D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  E+L  IV 
Sbjct: 136 IDIMIGEGPAARSVKLDLPPFTLVGATTRAGMLTNPLRDRFGIVARLEFYSAEELGYIVH 195

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A L  + + +  A EIA RSRGTPRIA RLLRRVRD+AEV      T  +ADAAL+ L
Sbjct: 196 RSAGLLQMNLDEAGALEIARRSRGTPRIANRLLRRVRDYAEVKAGGEATGAVADAALVML 255

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D+ G D +D + L  +   F GGPVG++ ++A + E RD IED++EPY+IQQG++QRT
Sbjct: 256 DVDRAGLDVMDRKLLGAVVEKFMGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGYLQRT 315

Query: 314 PRGRLLMPIAWQHLGIDIP 332
           PRGR+  P+A++HLGI  P
Sbjct: 316 PRGRVATPLAYRHLGIATP 334


>gi|15677115|ref|NP_274267.1| Holliday junction DNA helicase B [Neisseria meningitidis MC58]
 gi|121634936|ref|YP_975181.1| Holliday junction DNA helicase B [Neisseria meningitidis FAM18]
 gi|161870086|ref|YP_001599256.1| Holliday junction DNA helicase RuvB [Neisseria meningitidis 053442]
 gi|254805023|ref|YP_003083244.1| holliday junction DNA helicase [Neisseria meningitidis alpha14]
 gi|20140280|sp|Q9JZ86|RUVB_NEIMB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|166231505|sp|A1KU52|RUVB_NEIMF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|189046039|sp|A9LZC3|RUVB_NEIM0 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|7226483|gb|AAF41624.1| Holliday junction DNA helicase RuvB [Neisseria meningitidis MC58]
 gi|120866642|emb|CAM10393.1| putative Holliday junction DNA helicase [Neisseria meningitidis
           FAM18]
 gi|161595639|gb|ABX73299.1| Holliday junction DNA helicase [Neisseria meningitidis 053442]
 gi|254668565|emb|CBA06048.1| holliday junction DNA helicase [Neisseria meningitidis alpha14]
 gi|325132573|gb|EGC55266.1| Holliday junction DNA helicase RuvB [Neisseria meningitidis M6190]
 gi|325134509|gb|EGC57154.1| Holliday junction DNA helicase RuvB [Neisseria meningitidis M13399]
 gi|325138346|gb|EGC60915.1| Holliday junction DNA helicase RuvB [Neisseria meningitidis
           ES14902]
 gi|325140527|gb|EGC63048.1| Holliday junction DNA helicase RuvB [Neisseria meningitidis CU385]
 gi|325142486|gb|EGC64890.1| Holliday junction DNA helicase RuvB [Neisseria meningitidis
           961-5945]
 gi|325144612|gb|EGC66911.1| Holliday junction DNA helicase RuvB [Neisseria meningitidis
           M01-240013]
 gi|325198377|gb|ADY93833.1| Holliday junction DNA helicase RuvB [Neisseria meningitidis G2136]
 gi|325202063|gb|ADY97517.1| Holliday junction DNA helicase RuvB [Neisseria meningitidis
           M01-240149]
 gi|325205980|gb|ADZ01433.1| Holliday junction DNA helicase RuvB [Neisseria meningitidis
           M04-240196]
          Length = 343

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 198/319 (62%), Positives = 246/319 (77%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           +QE+     LRP+TL+++ GQ +A   L +FI+AAK R EALDHVL  GPPGLGKTTLA 
Sbjct: 23  AQEELLERALRPKTLDDYIGQDKAKEQLAIFIQAAKKRGEALDHVLLFGPPGLGKTTLAH 82

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++A+ELGVN R TSGPV+ +AGDLAALLTNL+  DVLFIDEIHRLS +VEEILYPA+ED+
Sbjct: 83  IIAKELGVNLRQTSGPVLERAGDLAALLTNLDPHDVLFIDEIHRLSPVVEEILYPALEDY 142

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           +LD+M+GEGP+ARSVKI+L  FTLI ATTR G+LTNPL+DRFGI  RL FYE  DL TIV
Sbjct: 143 RLDIMIGEGPAARSVKIDLPPFTLIGATTRAGMLTNPLRDRFGIVSRLEFYENRDLTTIV 202

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R A+L  L +++E A EIA RSRGTPRIA RLLRRVRDFA+V +  TI   IADAAL  
Sbjct: 203 SRSAQLLQLDMSEEGAEEIAKRSRGTPRIANRLLRRVRDFADVKNNGTIDGGIADAALSM 262

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D  G D +D ++L  +   FGGGPVG++ ++A + E  D IED+IEPY+IQQGF+QR
Sbjct: 263 LDVDAQGLDVMDRKFLEAVLHKFGGGPVGLDNVAAAIGESTDTIEDVIEPYLIQQGFLQR 322

Query: 313 TPRGRLLMPIAWQHLGIDI 331
           TPRGR+    A+ H G+ +
Sbjct: 323 TPRGRMATERAYLHFGLPV 341


>gi|71909669|ref|YP_287256.1| Holliday junction DNA helicase B [Dechloromonas aromatica RCB]
 gi|97190011|sp|Q478E5|RUVB_DECAR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|71849290|gb|AAZ48786.1| Holliday junction DNA helicase subunit RuvB [Dechloromonas
           aromatica RCB]
          Length = 358

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 195/320 (60%), Positives = 247/320 (77%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           +QE+A    LRP+ L ++TGQV+    L++FI+AA+ R+E+LDHVL  GPPGLGKTTLA 
Sbjct: 27  AQEEALERALRPKRLADYTGQVKIREQLEIFIQAARNRSESLDHVLLFGPPGLGKTTLAH 86

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           +VA E+GVN R TSGPV+ +AGDLAA+LTNLE  DVLFIDEIHRLS +VEEILYPA+EDF
Sbjct: 87  IVAAEMGVNLRQTSGPVLERAGDLAAILTNLEPHDVLFIDEIHRLSPVVEEILYPALEDF 146

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           Q+D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  E+LK+IV
Sbjct: 147 QIDIMIGEGPAARSVKLDLPPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTAEELKSIV 206

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R A L    +  E + EIA RSRGTPRIA RLLRRVRD+AEV     ITR++ADAAL  
Sbjct: 207 SRSASLLNAPIDPEGSFEIAKRSRGTPRIANRLLRRVRDYAEVKADGNITRQVADAALHM 266

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D  G D +D + L+ I   FGGGPVG++ I+A + E RD IED++EPY+IQQG++QR
Sbjct: 267 LDVDPAGLDIMDRKLLSAIIDKFGGGPVGVDNIAAAIGEARDTIEDVLEPYLIQQGYLQR 326

Query: 313 TPRGRLLMPIAWQHLGIDIP 332
           T RGR+  P  ++HLG+  P
Sbjct: 327 TLRGRIATPAIYRHLGLAEP 346


>gi|325204227|gb|ADY99680.1| Holliday junction DNA helicase RuvB [Neisseria meningitidis
           M01-240355]
          Length = 343

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 197/319 (61%), Positives = 246/319 (77%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           +QE+     LRP+TL+++ GQ +A   L +FI+AAK R EALDHVL  GPPGLGKTTLA 
Sbjct: 23  AQEELLERALRPKTLDDYIGQHKAKEQLAIFIQAAKKRGEALDHVLLFGPPGLGKTTLAH 82

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++A+ELGVN R TSGPV+ +AGDLAALLTNL+  DVLFIDEIHRLS +VEEILYPA+ED+
Sbjct: 83  IIAKELGVNLRQTSGPVLERAGDLAALLTNLDPHDVLFIDEIHRLSPVVEEILYPALEDY 142

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           +LD+M+GEGP+ARSVKI+L  FTL+ ATTR G+LTNPL+DRFGI  RL FYE  DL TIV
Sbjct: 143 RLDIMIGEGPAARSVKIDLPPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYENRDLTTIV 202

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R A+L  L +++E A EIA RSRGTPRIA RLLRRVRDFA+V +  TI   IADAAL  
Sbjct: 203 SRSAQLLQLDMSEEGAEEIAKRSRGTPRIANRLLRRVRDFADVKNNGTIDGGIADAALSM 262

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D  G D +D ++L  +   FGGGPVG++ ++A + E  D IED+IEPY+IQQGF+QR
Sbjct: 263 LDVDAQGLDVMDRKFLEAVLHKFGGGPVGLDNVAAAIGESTDTIEDVIEPYLIQQGFLQR 322

Query: 313 TPRGRLLMPIAWQHLGIDI 331
           TPRGR+    A+ H G+ +
Sbjct: 323 TPRGRMATERAYLHFGLPV 341


>gi|120598877|ref|YP_963451.1| Holliday junction DNA helicase RuvB [Shewanella sp. W3-18-1]
 gi|166231557|sp|A1RJQ2|RUVB_SHESW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|120558970|gb|ABM24897.1| Holliday junction DNA helicase RuvB [Shewanella sp. W3-18-1]
 gi|319426433|gb|ADV54507.1| Holliday junction DNA helicase RuvB [Shewanella putrefaciens 200]
          Length = 334

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 197/320 (61%), Positives = 246/320 (76%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           Q+D     +RP+ L+E+TGQ +  + LKVFI+AAK R EALDH+L  GPPGLGKTTLA +
Sbjct: 15  QDDVVDRAMRPKLLDEYTGQDDTRAQLKVFIQAAKNRNEALDHMLIYGPPGLGKTTLAMI 74

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           VA E+GVN +STSGPV+ KAGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPAMED+Q
Sbjct: 75  VANEMGVNIKSTSGPVLEKAGDLAALLTNLESGDVLFIDEIHRLSPVVEEILYPAMEDYQ 134

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           LD+M+GEGP+ARS+K++L  FTL+ ATTR G LT+PL+ RFGIP+RL FY I+DL TIV 
Sbjct: 135 LDIMIGEGPAARSIKLDLPPFTLVGATTRAGALTSPLRARFGIPLRLEFYNIKDLSTIVT 194

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A++ GL +  E A EIA RSRGTPRIA RLLRRVRD+AEV H   IT+ +AD AL  L
Sbjct: 195 RSAQVMGLEIDTEGAFEIARRSRGTPRIANRLLRRVRDYAEVKHDGAITQFVADHALDLL 254

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D  GFD +D + +  I   F GGPVG++ ++A + E R+ IED++EP++IQQGFIQRT
Sbjct: 255 DVDNEGFDYMDRKLMLAIIDKFMGGPVGLDNLAAAIGEERETIEDVLEPFLIQQGFIQRT 314

Query: 314 PRGRLLMPIAWQHLGIDIPH 333
           PRGR+    A+QH  +  P 
Sbjct: 315 PRGRIATARAYQHFQLIKPE 334


>gi|313668358|ref|YP_004048642.1| Holliday junction DNA helicase [Neisseria lactamica ST-640]
 gi|309378614|emb|CBX22792.1| unnamed protein product [Neisseria lactamica Y92-1009]
 gi|313005820|emb|CBN87274.1| putative Holliday junction DNA helicase [Neisseria lactamica
           020-06]
          Length = 343

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 197/319 (61%), Positives = 246/319 (77%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           +QE+     LRP+TL+++ GQ +A   L +FI+AAK R EALDHVL  GPPGLGKTTLA 
Sbjct: 23  AQEELLERALRPKTLDDYIGQHKAKEQLAIFIQAAKKRGEALDHVLLFGPPGLGKTTLAH 82

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++A+ELGVN R TSGPV+ +AGDLAALLTNL+  DVLFIDEIHRLS +VEEILYPA+ED+
Sbjct: 83  IIAKELGVNLRQTSGPVLERAGDLAALLTNLDPHDVLFIDEIHRLSPVVEEILYPALEDY 142

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           +LD+M+GEGP+ARSVKI+L  FTL+ ATTR G+LTNPL+DRFGI  RL FYE  DL TIV
Sbjct: 143 RLDIMIGEGPAARSVKIDLPPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYENRDLATIV 202

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R A+L  L +++E A EIA RSRGTPRIA RLLRRVRDFA+V +  TI   IADAAL  
Sbjct: 203 SRSAQLLQLDMSEEGAEEIAKRSRGTPRIANRLLRRVRDFADVKNNGTIDGGIADAALSM 262

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D  G D +D ++L  +   FGGGPVG++ ++A + E  D IED+IEPY+IQQGF+QR
Sbjct: 263 LDVDAQGLDVMDRKFLEAVLHKFGGGPVGLDNVAAAIGESTDTIEDVIEPYLIQQGFLQR 322

Query: 313 TPRGRLLMPIAWQHLGIDI 331
           TPRGR+    A+ H G+ +
Sbjct: 323 TPRGRMATERAYLHFGLPV 341


>gi|304320108|ref|YP_003853751.1| Holliday junction DNA helicase RuvB [Parvularcula bermudensis
           HTCC2503]
 gi|303299011|gb|ADM08610.1| Holliday junction DNA helicase RuvB [Parvularcula bermudensis
           HTCC2503]
          Length = 340

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 202/328 (61%), Positives = 247/328 (75%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           E  L+    QED     LRP  L +F GQ +  +NL +F+ AA+ R EA+DHVL  GPPG
Sbjct: 3   EARLTDPQPQEDDQDRALRPTRLADFQGQAQVKANLSIFVNAARQRGEAMDHVLLHGPPG 62

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLA++VA ELGV FRSTSGPVI+KAGDLAA+LT L+  DVLFIDEIHRL+  VEEI
Sbjct: 63  LGKTTLARIVAEELGVGFRSTSGPVISKAGDLAAILTGLDPHDVLFIDEIHRLTPTVEEI 122

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPAMEDF+LD+++GEGPSARSV I+L  FTLI ATTR GLL  PL DRFGIP+RL FY 
Sbjct: 123 LYPAMEDFRLDILIGEGPSARSVTIDLPPFTLIGATTRSGLLAKPLLDRFGIPLRLQFYT 182

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            E+LK I+ RGA      +T E A EIA RSRGTPR+AGRLLRRVRD A V     IT E
Sbjct: 183 EEELKGIILRGADRLSTPLTTEGAGEIARRSRGTPRVAGRLLRRVRDVATVEGTLPITEE 242

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +A  AL RL +D++G + LD RYL +I  +FGGGPVG++T++A L+E RDA+ED+IEP++
Sbjct: 243 VATKALRRLDVDQLGLEMLDRRYLEIIVTHFGGGPVGVDTLAASLAEARDAVEDVIEPFL 302

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           +QQG IQRTPRGR +   A++HLG+  P
Sbjct: 303 LQQGLIQRTPRGRKVTDRAYRHLGLPPP 330


>gi|74311810|ref|YP_310229.1| Holliday junction DNA helicase RuvB [Shigella sonnei Ss046]
 gi|97190309|sp|Q3Z2L8|RUVB_SHISS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|73855287|gb|AAZ87994.1| Holliday junction helicase subunit A [Shigella sonnei Ss046]
 gi|323165017|gb|EFZ50807.1| holliday junction DNA helicase RuvB [Shigella sonnei 53G]
          Length = 336

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 196/334 (58%), Positives = 252/334 (75%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S   +  ED     +RP+ LEE+ GQ +  S +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRLISAGTTLPEDGADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IV R A+  GL ++D+ A E+A R+RGTPRIA RLLRRVRDFAEV H  
Sbjct: 181 LEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           TI+ +IA  AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +EPY+IQQGF+QRTPRGR+    AW H GI  P 
Sbjct: 301 LEPYLIQQGFLQRTPRGRMATTRAWNHFGITPPE 334


>gi|281178930|dbj|BAI55260.1| holliday junction helicase subunit RuvB [Escherichia coli SE15]
          Length = 336

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 196/334 (58%), Positives = 252/334 (75%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S   +  ED     +RP+ LEE+ GQ +  S +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IV R A+  GL ++D+ A E+A R+RGTPRIA RLLRRVRDFAEV H  
Sbjct: 181 LEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           TI+ +IA  AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +EPY+IQQGF+QRTPRGR+    AW H GI  P 
Sbjct: 301 LEPYLIQQGFLQRTPRGRMATTRAWNHFGITPPE 334


>gi|146293037|ref|YP_001183461.1| Holliday junction DNA helicase RuvB [Shewanella putrefaciens CN-32]
 gi|166231555|sp|A4Y6S9|RUVB_SHEPC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|145564727|gb|ABP75662.1| Holliday junction DNA helicase RuvB [Shewanella putrefaciens CN-32]
          Length = 334

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 197/320 (61%), Positives = 246/320 (76%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           Q+D     +RP+ L+E+TGQ +  + LKVFI+AAK R EALDH+L  GPPGLGKTTLA +
Sbjct: 15  QDDVVDRAMRPKLLDEYTGQDDTRAQLKVFIQAAKNRNEALDHMLIYGPPGLGKTTLAMI 74

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           VA E+GVN +STSGPV+ KAGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPAMED+Q
Sbjct: 75  VANEMGVNIKSTSGPVLEKAGDLAALLTNLESGDVLFIDEIHRLSPVVEEILYPAMEDYQ 134

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           LD+M+GEGP+ARS+K++L  FTL+ ATTR G LT+PL+ RFGIP+RL FY I+DL TIV 
Sbjct: 135 LDIMIGEGPAARSIKLDLPPFTLVGATTRAGALTSPLRARFGIPLRLEFYNIKDLSTIVT 194

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A++ GL +  E A EIA RSRGTPRIA RLLRRVRD+AEV H   IT+ +AD AL  L
Sbjct: 195 RSAQVMGLEIDTEGAFEIARRSRGTPRIANRLLRRVRDYAEVKHDGAITQFVADHALDLL 254

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D  GFD +D + +  I   F GGPVG++ ++A + E R+ IED++EP++IQQGFIQRT
Sbjct: 255 DVDNEGFDYMDRKLMLAIIDKFMGGPVGLDNLAAAIGEERETIEDVLEPFLIQQGFIQRT 314

Query: 314 PRGRLLMPIAWQHLGIDIPH 333
           PRGR+    A+QH  +  P 
Sbjct: 315 PRGRIATARAYQHFQLIKPE 334


>gi|15802273|ref|NP_288297.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H7
           EDL933]
 gi|15831824|ref|NP_310597.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H7 str.
           Sakai]
 gi|16129813|ref|NP_416374.1| ATP-dependent DNA helicase, component of RuvABC resolvasome
           [Escherichia coli str. K-12 substr. MG1655]
 gi|82543693|ref|YP_407640.1| Holliday junction DNA helicase RuvB [Shigella boydii Sb227]
 gi|82776446|ref|YP_402795.1| Holliday junction DNA helicase RuvB [Shigella dysenteriae Sd197]
 gi|89108700|ref|AP_002480.1| ATP-dependent DNA helicase, component of RuvABC resolvasome
           [Escherichia coli str. K-12 substr. W3110]
 gi|91211085|ref|YP_541071.1| Holliday junction DNA helicase RuvB [Escherichia coli UTI89]
 gi|117624012|ref|YP_852925.1| Holliday junction DNA helicase B [Escherichia coli APEC O1]
 gi|157154884|ref|YP_001463163.1| Holliday junction DNA helicase RuvB [Escherichia coli E24377A]
 gi|157161329|ref|YP_001458647.1| Holliday junction DNA helicase RuvB [Escherichia coli HS]
 gi|168747888|ref|ZP_02772910.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H7 str.
           EC4113]
 gi|168757894|ref|ZP_02782901.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H7 str.
           EC4401]
 gi|168762346|ref|ZP_02787353.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H7 str.
           EC4501]
 gi|168770843|ref|ZP_02795850.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H7 str.
           EC4486]
 gi|168783160|ref|ZP_02808167.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H7 str.
           EC4076]
 gi|170019795|ref|YP_001724749.1| Holliday junction DNA helicase RuvB [Escherichia coli ATCC 8739]
 gi|170081516|ref|YP_001730836.1| ATP-dependent DNA helicase, component of RuvABC resolvasome
           [Escherichia coli str. K-12 substr. DH10B]
 gi|188495043|ref|ZP_03002313.1| Holliday junction DNA helicase RuvB [Escherichia coli 53638]
 gi|193066059|ref|ZP_03047116.1| Holliday junction DNA helicase RuvB [Escherichia coli E22]
 gi|193069915|ref|ZP_03050864.1| Holliday junction DNA helicase RuvB [Escherichia coli E110019]
 gi|194429647|ref|ZP_03062165.1| Holliday junction DNA helicase RuvB [Escherichia coli B171]
 gi|194433957|ref|ZP_03066229.1| Holliday junction DNA helicase RuvB [Shigella dysenteriae 1012]
 gi|194439048|ref|ZP_03071131.1| Holliday junction DNA helicase RuvB [Escherichia coli 101-1]
 gi|195940294|ref|ZP_03085676.1| Holliday junction DNA helicase B [Escherichia coli O157:H7 str.
           EC4024]
 gi|208810394|ref|ZP_03252270.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H7 str.
           EC4206]
 gi|208816613|ref|ZP_03257733.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H7 str.
           EC4045]
 gi|209399063|ref|YP_002270943.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H7 str.
           EC4115]
 gi|209919227|ref|YP_002293311.1| Holliday junction DNA helicase RuvB [Escherichia coli SE11]
 gi|217328582|ref|ZP_03444663.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H7 str.
           TW14588]
 gi|218554448|ref|YP_002387361.1| Holliday junction DNA helicase RuvB [Escherichia coli IAI1]
 gi|218558725|ref|YP_002391638.1| Holliday junction DNA helicase RuvB [Escherichia coli S88]
 gi|218689798|ref|YP_002398010.1| Holliday junction DNA helicase RuvB [Escherichia coli ED1a]
 gi|218695426|ref|YP_002403093.1| Holliday junction DNA helicase RuvB [Escherichia coli 55989]
 gi|237705814|ref|ZP_04536295.1| holliday junction helicase subunit A [Escherichia sp. 3_2_53FAA]
 gi|238901075|ref|YP_002926871.1| ATP-dependent DNA helicase, component of RuvABC resolvasome
           [Escherichia coli BW2952]
 gi|253773183|ref|YP_003036014.1| Holliday junction DNA helicase RuvB [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254161920|ref|YP_003045028.1| Holliday junction DNA helicase RuvB [Escherichia coli B str.
           REL606]
 gi|254793484|ref|YP_003078321.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H7 str.
           TW14359]
 gi|256017936|ref|ZP_05431801.1| Holliday junction DNA helicase RuvB [Shigella sp. D9]
 gi|256022474|ref|ZP_05436339.1| Holliday junction DNA helicase RuvB [Escherichia sp. 4_1_40B]
 gi|260844204|ref|YP_003221982.1| ATP-dependent DNA helicase RuvB [Escherichia coli O103:H2 str.
           12009]
 gi|260855800|ref|YP_003229691.1| ATP-dependent DNA helicase RuvB [Escherichia coli O26:H11 str.
           11368]
 gi|260868395|ref|YP_003234797.1| ATP-dependent DNA helicase RuvB [Escherichia coli O111:H- str.
           11128]
 gi|261227639|ref|ZP_05941920.1| ATP-dependent DNA helicase, component of RuvABC resolvasome
           [Escherichia coli O157:H7 str. FRIK2000]
 gi|261258195|ref|ZP_05950728.1| ATP-dependent DNA helicase RuvB [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291283042|ref|YP_003499860.1| Holliday junction ATP-dependent DNA helicase ruvB [Escherichia coli
           O55:H7 str. CB9615]
 gi|293415175|ref|ZP_06657818.1| Holliday junction DNA helicase RuvB [Escherichia coli B185]
 gi|293446247|ref|ZP_06662669.1| Holliday junction DNA helicase RuvB [Escherichia coli B088]
 gi|300816248|ref|ZP_07096470.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 107-1]
 gi|300824198|ref|ZP_07104316.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 119-7]
 gi|300904744|ref|ZP_07122574.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 84-1]
 gi|300917563|ref|ZP_07134218.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 115-1]
 gi|300924949|ref|ZP_07140876.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 182-1]
 gi|300928891|ref|ZP_07144396.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 187-1]
 gi|300951482|ref|ZP_07165317.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 116-1]
 gi|300956627|ref|ZP_07168906.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 175-1]
 gi|301029310|ref|ZP_07192407.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 196-1]
 gi|301304449|ref|ZP_07210561.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 124-1]
 gi|301327649|ref|ZP_07220857.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 78-1]
 gi|301645624|ref|ZP_07245553.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 146-1]
 gi|306814310|ref|ZP_07448476.1| Holliday junction DNA helicase RuvB [Escherichia coli NC101]
 gi|307138523|ref|ZP_07497879.1| Holliday junction DNA helicase RuvB [Escherichia coli H736]
 gi|307314228|ref|ZP_07593838.1| Holliday junction DNA helicase RuvB [Escherichia coli W]
 gi|309789256|ref|ZP_07683849.1| holliday junction DNA helicase RuvB [Shigella dysenteriae 1617]
 gi|309794241|ref|ZP_07688665.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 145-7]
 gi|312969900|ref|ZP_07784083.1| holliday junction DNA helicase RuvB [Escherichia coli 1827-70]
 gi|331642474|ref|ZP_08343609.1| holliday junction DNA helicase RuvB [Escherichia coli H736]
 gi|331647457|ref|ZP_08348549.1| holliday junction DNA helicase RuvB [Escherichia coli M605]
 gi|331653269|ref|ZP_08354274.1| holliday junction DNA helicase RuvB [Escherichia coli M718]
 gi|331668554|ref|ZP_08369402.1| holliday junction DNA helicase RuvB [Escherichia coli TA271]
 gi|331677741|ref|ZP_08378416.1| holliday junction DNA helicase RuvB [Escherichia coli H591]
 gi|331683366|ref|ZP_08383967.1| holliday junction DNA helicase RuvB [Escherichia coli H299]
 gi|332278970|ref|ZP_08391383.1| holliday junction DNA helicase RuvB [Shigella sp. D9]
 gi|67472392|sp|P0A812|RUVB_ECOLI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|67472393|sp|P0A813|RUVB_ECO57 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|97190295|sp|Q322E6|RUVB_SHIBS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|97190303|sp|Q32HA1|RUVB_SHIDS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|123266057|sp|Q1RAS4|RUVB_ECOUT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|166231490|sp|A1AC21|RUVB_ECOK1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|167012669|sp|A7ZMY4|RUVB_ECO24 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|167012670|sp|A8A160|RUVB_ECOHS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|189046031|sp|B1J0M8|RUVB_ECOLC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|226698775|sp|B5YR05|RUVB_ECO5E RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|226698776|sp|B6IBT9|RUVB_ECOSE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|226725457|sp|B7MBR9|RUVB_ECO45 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|226725459|sp|B7M2F1|RUVB_ECO8A RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|229564227|sp|B1XHC8|RUVB_ECODH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|254767426|sp|B7L7R3|RUVB_ECO55 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|254767427|sp|B7MVZ1|RUVB_ECO81 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|259495664|sp|C4ZQE4|RUVB_ECOBW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|12515916|gb|AAG56850.1|AE005408_8 Holliday junction helicase subunit A; branch migration; repair
           [Escherichia coli O157:H7 str. EDL933]
 gi|42903|emb|CAA30120.1| unnamed protein product [Escherichia coli]
 gi|147783|gb|AAA24613.1| ruvB protein [Escherichia coli]
 gi|1736507|dbj|BAA15671.1| ATP-dependent DNA helicase, component of RuvABC resolvasome
           [Escherichia coli str. K12 substr. W3110]
 gi|1788167|gb|AAC74930.1| ATP-dependent DNA helicase, component of RuvABC resolvasome
           [Escherichia coli str. K-12 substr. MG1655]
 gi|13362038|dbj|BAB35993.1| Holliday junction helicase subunit A [Escherichia coli O157:H7 str.
           Sakai]
 gi|81240594|gb|ABB61304.1| Holliday junction helicase subunit A [Shigella dysenteriae Sd197]
 gi|81245104|gb|ABB65812.1| Holliday junction helicase subunit A [Shigella boydii Sb227]
 gi|91072659|gb|ABE07540.1| RuvB protein, Holliday junction helicase subunit A [Escherichia
           coli UTI89]
 gi|115513136|gb|ABJ01211.1| Holliday junction DNA helicase ruvB [Escherichia coli APEC O1]
 gi|157067009|gb|ABV06264.1| Holliday junction DNA helicase RuvB [Escherichia coli HS]
 gi|157076914|gb|ABV16622.1| Holliday junction DNA helicase RuvB [Escherichia coli E24377A]
 gi|169754723|gb|ACA77422.1| Holliday junction DNA helicase RuvB [Escherichia coli ATCC 8739]
 gi|169889351|gb|ACB03058.1| ATP-dependent DNA helicase, component of RuvABC resolvasome
           [Escherichia coli str. K-12 substr. DH10B]
 gi|188017493|gb|EDU55615.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H7 str.
           EC4113]
 gi|188490242|gb|EDU65345.1| Holliday junction DNA helicase RuvB [Escherichia coli 53638]
 gi|188999428|gb|EDU68414.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H7 str.
           EC4076]
 gi|189355195|gb|EDU73614.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H7 str.
           EC4401]
 gi|189360310|gb|EDU78729.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H7 str.
           EC4486]
 gi|189367355|gb|EDU85771.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H7 str.
           EC4501]
 gi|192926296|gb|EDV80933.1| Holliday junction DNA helicase RuvB [Escherichia coli E22]
 gi|192956815|gb|EDV87269.1| Holliday junction DNA helicase RuvB [Escherichia coli E110019]
 gi|194412289|gb|EDX28593.1| Holliday junction DNA helicase RuvB [Escherichia coli B171]
 gi|194417829|gb|EDX33926.1| Holliday junction DNA helicase RuvB [Shigella dysenteriae 1012]
 gi|194422007|gb|EDX38011.1| Holliday junction DNA helicase RuvB [Escherichia coli 101-1]
 gi|195182922|dbj|BAG66490.1| Holliday junction helicase subunit A [Escherichia coli O111:H-]
 gi|208724910|gb|EDZ74617.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H7 str.
           EC4206]
 gi|208730956|gb|EDZ79645.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H7 str.
           EC4045]
 gi|209160463|gb|ACI37896.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H7 str.
           EC4115]
 gi|209767478|gb|ACI82051.1| Holliday junction helicase subunit A [Escherichia coli]
 gi|209767480|gb|ACI82052.1| Holliday junction helicase subunit A [Escherichia coli]
 gi|209767482|gb|ACI82053.1| Holliday junction helicase subunit A [Escherichia coli]
 gi|209767484|gb|ACI82054.1| Holliday junction helicase subunit A [Escherichia coli]
 gi|209767486|gb|ACI82055.1| Holliday junction helicase subunit A [Escherichia coli]
 gi|209912486|dbj|BAG77560.1| holliday junction helicase subunit RuvB [Escherichia coli SE11]
 gi|217317929|gb|EEC26356.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H7 str.
           TW14588]
 gi|218352158|emb|CAU97897.1| ATP-dependent DNA helicase, component of RuvABC resolvasome
           [Escherichia coli 55989]
 gi|218361216|emb|CAQ98800.1| ATP-dependent DNA helicase, component of RuvABC resolvasome
           [Escherichia coli IAI1]
 gi|218365494|emb|CAR03221.1| ATP-dependent DNA helicase, component of RuvABC resolvasome
           [Escherichia coli S88]
 gi|218427362|emb|CAR08257.2| ATP-dependent DNA helicase, component of RuvABC resolvasome
           [Escherichia coli ED1a]
 gi|222033609|emb|CAP76350.1| Holliday junction ATP-dependent DNA helicase ruvB [Escherichia coli
           LF82]
 gi|226900571|gb|EEH86830.1| holliday junction helicase subunit A [Escherichia sp. 3_2_53FAA]
 gi|238860043|gb|ACR62041.1| ATP-dependent DNA helicase, component of RuvABC resolvasome
           [Escherichia coli BW2952]
 gi|242377581|emb|CAQ32336.1| branch migration of Holliday structures; repair helicase, subunit
           of resolvasome [Escherichia coli BL21(DE3)]
 gi|253324227|gb|ACT28829.1| Holliday junction DNA helicase RuvB [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253973821|gb|ACT39492.1| Holliday junction DNA helicase B [Escherichia coli B str. REL606]
 gi|253978015|gb|ACT43685.1| Holliday junction DNA helicase B [Escherichia coli BL21(DE3)]
 gi|254592884|gb|ACT72245.1| ATP-dependent DNA helicase, component of RuvABC resolvasome
           [Escherichia coli O157:H7 str. TW14359]
 gi|257754449|dbj|BAI25951.1| ATP-dependent DNA helicase RuvB [Escherichia coli O26:H11 str.
           11368]
 gi|257759351|dbj|BAI30848.1| ATP-dependent DNA helicase RuvB [Escherichia coli O103:H2 str.
           12009]
 gi|257764751|dbj|BAI36246.1| ATP-dependent DNA helicase RuvB [Escherichia coli O111:H- str.
           11128]
 gi|260449017|gb|ACX39439.1| Holliday junction DNA helicase RuvB [Escherichia coli DH1]
 gi|290762915|gb|ADD56876.1| Holliday junction ATP-dependent DNA helicase ruvB [Escherichia coli
           O55:H7 str. CB9615]
 gi|291323077|gb|EFE62505.1| Holliday junction DNA helicase RuvB [Escherichia coli B088]
 gi|291432823|gb|EFF05802.1| Holliday junction DNA helicase RuvB [Escherichia coli B185]
 gi|294494033|gb|ADE92789.1| Holliday junction DNA helicase RuvB [Escherichia coli IHE3034]
 gi|299877736|gb|EFI85947.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 196-1]
 gi|300316609|gb|EFJ66393.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 175-1]
 gi|300403328|gb|EFJ86866.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 84-1]
 gi|300415217|gb|EFJ98527.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 115-1]
 gi|300418885|gb|EFK02196.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 182-1]
 gi|300449232|gb|EFK12852.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 116-1]
 gi|300463119|gb|EFK26612.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 187-1]
 gi|300523269|gb|EFK44338.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 119-7]
 gi|300530938|gb|EFK52000.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 107-1]
 gi|300840300|gb|EFK68060.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 124-1]
 gi|300845797|gb|EFK73557.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 78-1]
 gi|301076156|gb|EFK90962.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 146-1]
 gi|305852469|gb|EFM52920.1| Holliday junction DNA helicase RuvB [Escherichia coli NC101]
 gi|306906197|gb|EFN36715.1| Holliday junction DNA helicase RuvB [Escherichia coli W]
 gi|307626657|gb|ADN70961.1| Holliday junction DNA helicase RuvB [Escherichia coli UM146]
 gi|308122146|gb|EFO59408.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 145-7]
 gi|308923010|gb|EFP68524.1| holliday junction DNA helicase RuvB [Shigella dysenteriae 1617]
 gi|309702084|emb|CBJ01398.1| holliday junction ATP-dependent DNA helicase [Escherichia coli ETEC
           H10407]
 gi|310338185|gb|EFQ03274.1| holliday junction DNA helicase RuvB [Escherichia coli 1827-70]
 gi|312946460|gb|ADR27287.1| Holliday junction DNA helicase RuvB [Escherichia coli O83:H1 str.
           NRG 857C]
 gi|315061166|gb|ADT75493.1| ATP-dependent DNA helicase, component of RuvABC resolvasome
           [Escherichia coli W]
 gi|315136503|dbj|BAJ43662.1| Holliday junction DNA resolvasome [Escherichia coli DH1]
 gi|315257308|gb|EFU37276.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 85-1]
 gi|315286571|gb|EFU46006.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 110-3]
 gi|320173572|gb|EFW48767.1| Holliday junction DNA helicase RuvB [Shigella dysenteriae CDC
           74-1112]
 gi|320182602|gb|EFW57491.1| Holliday junction DNA helicase RuvB [Shigella boydii ATCC 9905]
 gi|320187794|gb|EFW62468.1| Holliday junction DNA helicase RuvB [Shigella flexneri CDC 796-83]
 gi|320188561|gb|EFW63223.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H7 str.
           EC1212]
 gi|320194424|gb|EFW69055.1| Holliday junction DNA helicase RuvB [Escherichia coli WV_060327]
 gi|320198054|gb|EFW72662.1| Holliday junction DNA helicase RuvB [Escherichia coli EC4100B]
 gi|320641714|gb|EFX11102.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H7 str.
           G5101]
 gi|320647074|gb|EFX15907.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H- str.
           493-89]
 gi|320652357|gb|EFX20655.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H- str.
           H 2687]
 gi|320657958|gb|EFX25720.1| Holliday junction DNA helicase RuvB [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320658531|gb|EFX26225.1| Holliday junction DNA helicase RuvB [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320668429|gb|EFX35256.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323152651|gb|EFZ38927.1| holliday junction DNA helicase RuvB [Escherichia coli EPECa14]
 gi|323158655|gb|EFZ44669.1| holliday junction DNA helicase RuvB [Escherichia coli E128010]
 gi|323174752|gb|EFZ60368.1| holliday junction DNA helicase RuvB [Escherichia coli LT-68]
 gi|323180657|gb|EFZ66202.1| holliday junction DNA helicase RuvB [Escherichia coli 1180]
 gi|323186364|gb|EFZ71714.1| holliday junction DNA helicase RuvB [Escherichia coli 1357]
 gi|323186867|gb|EFZ72186.1| holliday junction DNA helicase RuvB [Escherichia coli RN587/1]
 gi|323378257|gb|ADX50525.1| Holliday junction DNA helicase RuvB [Escherichia coli KO11]
 gi|323937118|gb|EGB33398.1| Holliday junction DNA helicase RuvB [Escherichia coli E1520]
 gi|323940472|gb|EGB36663.1| Holliday junction DNA helicase RuvB [Escherichia coli E482]
 gi|323948254|gb|EGB44242.1| Holliday junction DNA helicase RuvB [Escherichia coli H120]
 gi|323952362|gb|EGB48235.1| Holliday junction DNA helicase RuvB [Escherichia coli H252]
 gi|323956491|gb|EGB52233.1| Holliday junction DNA helicase RuvB [Escherichia coli H263]
 gi|323961915|gb|EGB57514.1| Holliday junction DNA helicase RuvB [Escherichia coli H489]
 gi|323972632|gb|EGB67835.1| Holliday junction DNA helicase RuvB [Escherichia coli TA007]
 gi|324007233|gb|EGB76452.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 57-2]
 gi|324018003|gb|EGB87222.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 117-3]
 gi|324118920|gb|EGC12809.1| Holliday junction DNA helicase RuvB [Escherichia coli E1167]
 gi|326342240|gb|EGD66021.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H7 str.
           1044]
 gi|326343790|gb|EGD67552.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H7 str.
           1125]
 gi|330911670|gb|EGH40180.1| holliday junction DNA helicase RuvB [Escherichia coli AA86]
 gi|331039272|gb|EGI11492.1| holliday junction DNA helicase RuvB [Escherichia coli H736]
 gi|331043181|gb|EGI15319.1| holliday junction DNA helicase RuvB [Escherichia coli M605]
 gi|331049367|gb|EGI21439.1| holliday junction DNA helicase RuvB [Escherichia coli M718]
 gi|331063748|gb|EGI35659.1| holliday junction DNA helicase RuvB [Escherichia coli TA271]
 gi|331074201|gb|EGI45521.1| holliday junction DNA helicase RuvB [Escherichia coli H591]
 gi|331079581|gb|EGI50778.1| holliday junction DNA helicase RuvB [Escherichia coli H299]
 gi|332090037|gb|EGI95137.1| holliday junction DNA helicase RuvB [Shigella boydii 5216-82]
 gi|332095252|gb|EGJ00279.1| holliday junction DNA helicase RuvB [Shigella dysenteriae 155-74]
 gi|332096697|gb|EGJ01688.1| holliday junction DNA helicase RuvB [Shigella boydii 3594-74]
 gi|332101322|gb|EGJ04668.1| holliday junction DNA helicase RuvB [Shigella sp. D9]
 gi|332343586|gb|AEE56920.1| holliday junction DNA helicase RuvB [Escherichia coli UMNK88]
 gi|333004713|gb|EGK24236.1| holliday junction DNA helicase RuvB [Shigella flexneri K-272]
 gi|333018433|gb|EGK37731.1| holliday junction DNA helicase RuvB [Shigella flexneri K-227]
          Length = 336

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 196/334 (58%), Positives = 252/334 (75%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S   +  ED     +RP+ LEE+ GQ +  S +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IV R A+  GL ++D+ A E+A R+RGTPRIA RLLRRVRDFAEV H  
Sbjct: 181 LEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           TI+ +IA  AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +EPY+IQQGF+QRTPRGR+    AW H GI  P 
Sbjct: 301 LEPYLIQQGFLQRTPRGRMATTRAWNHFGITPPE 334


>gi|186477305|ref|YP_001858775.1| Holliday junction DNA helicase RuvB [Burkholderia phymatum STM815]
 gi|184193764|gb|ACC71729.1| Holliday junction DNA helicase RuvB [Burkholderia phymatum STM815]
          Length = 363

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 195/319 (61%), Positives = 243/319 (76%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
            E+A    LRPR L+E+ GQ +    L++FIEAAK R+E+LDHVL  GPPGLGKTTLA +
Sbjct: 30  NEEAFERALRPRQLDEYVGQEKVRGQLEIFIEAAKRRSESLDHVLLFGPPGLGKTTLAHI 89

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +ARE+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+Q
Sbjct: 90  IAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDYQ 149

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           +D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  E+L  IV 
Sbjct: 150 IDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYNAEELARIVS 209

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A L G  +  E A EIA RSRGTPRIA RLLRRVRD+AEV     IT ++ADAAL  L
Sbjct: 210 RSASLLGAQIHPEGALEIAKRSRGTPRIANRLLRRVRDYAEVKADGNITAKVADAALKML 269

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D +GFD +D + L  I   F GGPVG++ ++A + E RD IED++EPY+IQQGF+QRT
Sbjct: 270 DVDPVGFDLMDRKLLEAILHKFDGGPVGVDNLAAAIGEERDTIEDVLEPYLIQQGFLQRT 329

Query: 314 PRGRLLMPIAWQHLGIDIP 332
           PRGR+   + ++H G+  P
Sbjct: 330 PRGRVATLLTYRHFGLAAP 348


>gi|331657909|ref|ZP_08358871.1| holliday junction DNA helicase RuvB [Escherichia coli TA206]
 gi|315296551|gb|EFU55848.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 16-3]
 gi|331056157|gb|EGI28166.1| holliday junction DNA helicase RuvB [Escherichia coli TA206]
          Length = 336

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 196/334 (58%), Positives = 252/334 (75%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S   +  ED     +RP+ LEE+ GQ +  S +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IV R A+  GL ++D+ A E+A R+RGTPRIA RLLRRVRDFAEV H  
Sbjct: 181 LEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           TI+ +IA  AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +EPY+IQQGF+QRTPRGR+    AW H GI  P 
Sbjct: 301 LEPYLIQQGFLQRTPRGRMATTRAWNHFGITPPE 334


>gi|167627947|ref|YP_001678447.1| Holliday junction DNA helicase RuvB [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
 gi|189046033|sp|B0U0B6|RUVB_FRAP2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|167597948|gb|ABZ87946.1| Holliday junction DNA helicase, subunit B [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
          Length = 348

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 192/335 (57%), Positives = 253/335 (75%), Gaps = 3/335 (0%)

Query: 1   MMDREGLLSRNVSQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M++ + ++S N  Q   + S+   +RP+TL E+ GQ      +++FI+AAK+R +ALDH 
Sbjct: 1   MIETDRIISANTVQTKDENSIDRAIRPKTLAEYEGQPAVREQMEIFIQAAKSRKDALDHT 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTL+ ++A E+ V  + TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRL
Sbjct: 61  LIFGPPGLGKTTLSNIIANEMEVELKQTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           S ++EEILYPAMED+QLD+M+GEGP+ARS+KI+L  FTL+ ATTR GLLT+PL+DRFGI 
Sbjct: 121 SPVIEEILYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLVGATTRAGLLTSPLRDRFGII 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            RL FY ++DL  IV R AKL  L +TD+ A EIA RSRGTPRIA RLLRRVRD+A+V  
Sbjct: 181 QRLEFYSVDDLAKIVYRSAKLLDLDITDDGANEIAKRSRGTPRIANRLLRRVRDYAQVKA 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
           +  I+ +IAD AL  L +D +GFD +D +YL  +   FGGGPVG++T++A LSE +  IE
Sbjct: 241 SGVISYDIADKALTMLKVDPVGFDHMDHKYLLTLMEKFGGGPVGLDTMAAALSEEKGTIE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           D+IEPY+IQQG++ RT RGR+   +A+ H  + IP
Sbjct: 301 DVIEPYLIQQGYLMRTARGRIATLLAYNHFKLKIP 335


>gi|237731898|ref|ZP_04562379.1| holliday junction DNA helicase ruvB [Citrobacter sp. 30_2]
 gi|226907437|gb|EEH93355.1| holliday junction DNA helicase ruvB [Citrobacter sp. 30_2]
          Length = 336

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 197/334 (58%), Positives = 253/334 (75%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSR-NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S  + + ED     +RP+ LEE+ GQ +  S +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRLISAVSTTPEDLVDRAIRPKLLEEYIGQPQVRSQMEIFIQAAKLRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IV R A+  GL ++DE A E+A R+RGTPRIA RLLRRVRDFAEV H  
Sbjct: 181 LEFYQVADLQHIVGRSARFMGLEMSDEGALEVARRARGTPRIANRLLRRVRDFAEVKHDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           TI+ +IA  AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +EPY+IQQGF+QRTPRGR+    AW H GI  P 
Sbjct: 301 LEPYLIQQGFLQRTPRGRMATVRAWNHFGITPPQ 334


>gi|218768245|ref|YP_002342757.1| Holliday junction DNA helicase RuvB [Neisseria meningitidis Z2491]
 gi|20140277|sp|Q9JUB0|RUVB_NEIMA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|121052253|emb|CAM08578.1| putative Holliday junction DNA helicase [Neisseria meningitidis
           Z2491]
 gi|254670095|emb|CBA05013.1| holliday junction DNA helicase [Neisseria meningitidis alpha153]
 gi|254673909|emb|CBA09693.1| holliday junction DNA helicase [Neisseria meningitidis alpha275]
 gi|261392495|emb|CAX50046.1| Holliday junction DNA helicase RuvB [Neisseria meningitidis 8013]
 gi|316985102|gb|EFV64055.1| holliday junction DNA helicase RuvB [Neisseria meningitidis H44/76]
 gi|319410492|emb|CBY90853.1| Holliday junction DNA helicase RuvB [Neisseria meningitidis WUE
           2594]
 gi|325200126|gb|ADY95581.1| Holliday junction DNA helicase RuvB [Neisseria meningitidis H44/76]
 gi|325208183|gb|ADZ03635.1| Holliday junction DNA helicase RuvB [Neisseria meningitidis
           NZ-05/33]
          Length = 343

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 197/319 (61%), Positives = 246/319 (77%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           +QE+     LRP+TL+++ GQ +A   L +FI+AAK R EALDHVL  GPPGLGKTTLA 
Sbjct: 23  AQEELLERALRPKTLDDYIGQHKAKEQLAIFIQAAKKRGEALDHVLLFGPPGLGKTTLAH 82

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++A+ELGVN R TSGPV+ +AGDLAALLTNL+  DVLFIDEIHRLS +VEEILYPA+ED+
Sbjct: 83  IIAKELGVNLRQTSGPVLERAGDLAALLTNLDPHDVLFIDEIHRLSPVVEEILYPALEDY 142

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           +LD+M+GEGP+ARSVKI+L  FTL+ ATTR G+LTNPL+DRFGI  RL FYE  DL TIV
Sbjct: 143 RLDIMIGEGPAARSVKIDLPPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYENRDLATIV 202

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R A+L  L +++E A EIA RSRGTPRIA RLLRRVRDFA+V +  TI   IADAAL  
Sbjct: 203 SRSAQLLQLDMSEEGAEEIAKRSRGTPRIANRLLRRVRDFADVKNNGTIDGGIADAALSM 262

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D  G D +D ++L  +   FGGGPVG++ ++A + E  D IED+IEPY+IQQGF+QR
Sbjct: 263 LDVDVQGLDVMDRKFLEAVLHKFGGGPVGLDNVAAAIGESTDTIEDVIEPYLIQQGFLQR 322

Query: 313 TPRGRLLMPIAWQHLGIDI 331
           TPRGR+    A+ H G+ +
Sbjct: 323 TPRGRMATERAYLHFGLPV 341


>gi|331673390|ref|ZP_08374158.1| holliday junction DNA helicase RuvB [Escherichia coli TA280]
 gi|331069588|gb|EGI40975.1| holliday junction DNA helicase RuvB [Escherichia coli TA280]
          Length = 336

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 196/334 (58%), Positives = 252/334 (75%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S   +  ED     +RP+ LEE+ GQ +  S +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IV R A+  GL ++D+ A E+A R+RGTPRIA RLLRRVRDFAEV H  
Sbjct: 181 LEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           TI+ +IA  AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 TISADIAAQALDMLNVDAEGFDYMDRKLLLTVIDKFFGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +EPY+IQQGF+QRTPRGR+    AW H GI  P 
Sbjct: 301 LEPYLIQQGFLQRTPRGRMATVRAWNHFGITPPE 334


>gi|152970922|ref|YP_001336031.1| Holliday junction DNA helicase RuvB [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238895437|ref|YP_002920172.1| Holliday junction DNA helicase RuvB [Klebsiella pneumoniae
           NTUH-K2044]
 gi|330001164|ref|ZP_08303910.1| Holliday junction DNA helicase RuvB [Klebsiella sp. MS 92-3]
 gi|166231498|sp|A6TB30|RUVB_KLEP7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|150955771|gb|ABR77801.1| Holliday junction DNA helicase RuvB [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238547754|dbj|BAH64105.1| Holliday junction DNA helicase [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|328537775|gb|EGF63975.1| Holliday junction DNA helicase RuvB [Klebsiella sp. MS 92-3]
          Length = 336

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 199/333 (59%), Positives = 253/333 (75%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S + S  E+A    +RP+ L E+ GQ +  S +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRLVSADSSGFEEAADRAIRPKLLAEYVGQPQVRSQMEIFIQAAKLRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY+I DL+ IV R A+  GL ++DE A E+A RSRGTPRIA RLLRRVRDFAEV H  
Sbjct: 181 LEFYQIPDLQHIVSRSARHMGLEMSDEGALEVARRSRGTPRIANRLLRRVRDFAEVRHDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           TI+ +IA  AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           +EPY+IQQGF+QRTPRGR+    AW H GI  P
Sbjct: 301 LEPYLIQQGFLQRTPRGRMATVRAWNHFGITPP 333


>gi|26248126|ref|NP_754166.1| Holliday junction DNA helicase RuvB [Escherichia coli CFT073]
 gi|110641978|ref|YP_669708.1| Holliday junction DNA helicase RuvB [Escherichia coli 536]
 gi|170681518|ref|YP_001743384.1| Holliday junction DNA helicase RuvB [Escherichia coli SMS-3-5]
 gi|191173034|ref|ZP_03034568.1| Holliday junction DNA helicase RuvB [Escherichia coli F11]
 gi|215487073|ref|YP_002329504.1| Holliday junction DNA helicase RuvB [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218548579|ref|YP_002382370.1| Holliday junction DNA helicase RuvB [Escherichia fergusonii ATCC
           35469]
 gi|218699568|ref|YP_002407197.1| Holliday junction DNA helicase RuvB [Escherichia coli IAI39]
 gi|218705361|ref|YP_002412880.1| Holliday junction DNA helicase RuvB [Escherichia coli UMN026]
 gi|227885712|ref|ZP_04003517.1| Holliday junction DNA helicase B [Escherichia coli 83972]
 gi|293405355|ref|ZP_06649347.1| ruvB [Escherichia coli FVEC1412]
 gi|293410172|ref|ZP_06653748.1| Holliday junction DNA helicase RuvB [Escherichia coli B354]
 gi|298380997|ref|ZP_06990596.1| Holliday junction DNA helicase RuvB [Escherichia coli FVEC1302]
 gi|300899110|ref|ZP_07117393.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 198-1]
 gi|300935835|ref|ZP_07150793.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 21-1]
 gi|300982164|ref|ZP_07175899.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 200-1]
 gi|300994111|ref|ZP_07180694.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 45-1]
 gi|301018304|ref|ZP_07182813.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 69-1]
 gi|312967062|ref|ZP_07781280.1| holliday junction DNA helicase RuvB [Escherichia coli 2362-75]
 gi|331663356|ref|ZP_08364266.1| holliday junction DNA helicase RuvB [Escherichia coli TA143]
 gi|29336705|sp|Q8FGR3|RUVB_ECOL6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|122958286|sp|Q0TGX2|RUVB_ECOL5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|226725458|sp|B7NS58|RUVB_ECO7I RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|226725460|sp|B7NBL1|RUVB_ECOLU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|226725461|sp|B1LD11|RUVB_ECOSM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|226725462|sp|B7LPI4|RUVB_ESCF3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|254767425|sp|B7USN7|RUVB_ECO27 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|26108529|gb|AAN80731.1|AE016761_306 Holliday junction DNA helicase ruvB [Escherichia coli CFT073]
 gi|110343570|gb|ABG69807.1| holliday junction DNA helicase RuvB [Escherichia coli 536]
 gi|170519236|gb|ACB17414.1| Holliday junction DNA helicase RuvB [Escherichia coli SMS-3-5]
 gi|190906745|gb|EDV66350.1| Holliday junction DNA helicase RuvB [Escherichia coli F11]
 gi|215265145|emb|CAS09533.1| ATP-dependent DNA helicase RuvB, component of RuvABC resolvasome
           [Escherichia coli O127:H6 str. E2348/69]
 gi|218356120|emb|CAQ88737.1| ATP-dependent DNA helicase, component of RuvABC resolvasome
           [Escherichia fergusonii ATCC 35469]
 gi|218369554|emb|CAR17323.1| ATP-dependent DNA helicase, component of RuvABC resolvasome
           [Escherichia coli IAI39]
 gi|218432458|emb|CAR13351.1| ATP-dependent DNA helicase, component of RuvABC resolvasome
           [Escherichia coli UMN026]
 gi|227837285|gb|EEJ47751.1| Holliday junction DNA helicase B [Escherichia coli 83972]
 gi|284921780|emb|CBG34853.1| holliday junction ATP-dependent DNA helicase [Escherichia coli 042]
 gi|291427563|gb|EFF00590.1| ruvB [Escherichia coli FVEC1412]
 gi|291470640|gb|EFF13124.1| Holliday junction DNA helicase RuvB [Escherichia coli B354]
 gi|298278439|gb|EFI19953.1| Holliday junction DNA helicase RuvB [Escherichia coli FVEC1302]
 gi|300307320|gb|EFJ61840.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 200-1]
 gi|300357267|gb|EFJ73137.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 198-1]
 gi|300399740|gb|EFJ83278.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 69-1]
 gi|300406373|gb|EFJ89911.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 45-1]
 gi|300458947|gb|EFK22440.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 21-1]
 gi|307553879|gb|ADN46654.1| holliday junction ATP-dependent DNA helicase RuvB [Escherichia coli
           ABU 83972]
 gi|312288526|gb|EFR16428.1| holliday junction DNA helicase RuvB [Escherichia coli 2362-75]
 gi|315290339|gb|EFU49715.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 153-1]
 gi|323968280|gb|EGB63687.1| Holliday junction DNA helicase RuvB [Escherichia coli M863]
 gi|323977956|gb|EGB73042.1| Holliday junction DNA helicase RuvB [Escherichia coli TW10509]
 gi|324012871|gb|EGB82090.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 60-1]
 gi|324113596|gb|EGC07571.1| Holliday junction DNA helicase RuvB [Escherichia fergusonii B253]
 gi|325496997|gb|EGC94856.1| Holliday junction DNA helicase RuvB [Escherichia fergusonii ECD227]
 gi|327252986|gb|EGE64640.1| holliday junction DNA helicase RuvB [Escherichia coli STEC_7v]
 gi|331059155|gb|EGI31132.1| holliday junction DNA helicase RuvB [Escherichia coli TA143]
          Length = 336

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 196/334 (58%), Positives = 252/334 (75%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S   +  ED     +RP+ LEE+ GQ +  S +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IV R A+  GL ++D+ A E+A R+RGTPRIA RLLRRVRDFAEV H  
Sbjct: 181 LEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           TI+ +IA  AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +EPY+IQQGF+QRTPRGR+    AW H GI  P 
Sbjct: 301 LEPYLIQQGFLQRTPRGRMATVRAWNHFGITPPE 334


>gi|325267529|ref|ZP_08134182.1| crossover junction ATP-dependent DNA helicase RuvB [Kingella
           denitrificans ATCC 33394]
 gi|324981054|gb|EGC16713.1| crossover junction ATP-dependent DNA helicase RuvB [Kingella
           denitrificans ATCC 33394]
          Length = 347

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 194/317 (61%), Positives = 242/317 (76%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           +QE+     LRP+ L ++ GQ +A   L +FI+AAK R EALDH L  GPPGLGKTTLA 
Sbjct: 27  TQEEQLERALRPKFLADYIGQHKAKEQLDIFIQAAKHRGEALDHTLLFGPPGLGKTTLAH 86

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++ARELGVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPAMED+
Sbjct: 87  IIARELGVNLRQTSGPVLERAGDLAALLTNLEPHDVLFIDEIHRLSPVVEEILYPAMEDY 146

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           QLD+M+GEGP+ARSVKI+L  FTL+ ATTR G+LTNPL+DRFGI  RL FY+ +DL+TIV
Sbjct: 147 QLDIMIGEGPAARSVKIDLPPFTLVGATTRAGMLTNPLRDRFGIVARLEFYQPQDLRTIV 206

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R A+L  + + ++ A E+A RSRGTPRIA RLLRRVRDFA+V  A  I   +ADAAL  
Sbjct: 207 ARSAQLLDMNLNEQGAWEVACRSRGTPRIANRLLRRVRDFAQVKKAACIDAAVADAALSL 266

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +DK G D +D ++L  +   F GGPVG+E ++A + E  D IED+IEPY+IQQG +QR
Sbjct: 267 LDVDKAGLDMMDRKFLEAVLHKFSGGPVGLENVAAAIGESTDTIEDVIEPYLIQQGLLQR 326

Query: 313 TPRGRLLMPIAWQHLGI 329
           TPRGR+    A++H G+
Sbjct: 327 TPRGRVATAGAFEHFGL 343


>gi|170769448|ref|ZP_02903901.1| Holliday junction DNA helicase RuvB [Escherichia albertii TW07627]
 gi|170121772|gb|EDS90703.1| Holliday junction DNA helicase RuvB [Escherichia albertii TW07627]
          Length = 336

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 195/334 (58%), Positives = 252/334 (75%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S   +  ED     +RP+ LEE+ GQ +  S +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IV R A+  GL ++D+ A E+A R+RGTPRIA RLLRRVRDFAEV H  
Sbjct: 181 LEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           TI+ ++A  AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 TISADVAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +EPY+IQQGF+QRTPRGR+    AW H GI  P 
Sbjct: 301 LEPYLIQQGFLQRTPRGRMATARAWNHFGITPPE 334


>gi|308049715|ref|YP_003913281.1| Holliday junction DNA helicase RuvB [Ferrimonas balearica DSM 9799]
 gi|307631905|gb|ADN76207.1| Holliday junction DNA helicase RuvB [Ferrimonas balearica DSM 9799]
          Length = 336

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 195/308 (63%), Positives = 242/308 (78%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L ++TGQ EA + L+VFI+AA+ R EALDH+L  GPPGLGKTTLA +VA E+GVN
Sbjct: 24  MRPKMLTDYTGQDEAKAQLEVFIQAARNRGEALDHLLIFGPPGLGKTTLANIVANEMGVN 83

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            +STSGPV+ KAGDLAALLTNLE  DVLFIDEIHRLS +VEE+LYPAMED+QLD+M+GEG
Sbjct: 84  IKSTSGPVLEKAGDLAALLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEG 143

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+K++L  FTLI ATTR G LT+PL+ RFGIP+RL FY + DL  IVQR A++  L
Sbjct: 144 PAARSIKLDLPPFTLIGATTRAGALTSPLRARFGIPLRLEFYNVRDLTQIVQRSAEVLDL 203

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
           ++  + A EIA RSRGTPRIA RLLRRVRDFAEV     IT E+A  AL  L +DK GFD
Sbjct: 204 SMEGDGAVEIARRSRGTPRIANRLLRRVRDFAEVKFDGVITAEVAAKALDLLDVDKEGFD 263

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            LD + LT I   F GGPVG+E ++A + E R+ IED++EP++IQQGF+QRTPRGR+   
Sbjct: 264 YLDRKLLTTIIDKFSGGPVGLENLAAAIGEERETIEDVLEPFLIQQGFLQRTPRGRIATD 323

Query: 322 IAWQHLGI 329
            A+QH G+
Sbjct: 324 RAYQHFGL 331


>gi|24113210|ref|NP_707720.1| Holliday junction DNA helicase RuvB [Shigella flexneri 2a str. 301]
 gi|30063271|ref|NP_837442.1| Holliday junction DNA helicase RuvB [Shigella flexneri 2a str.
           2457T]
 gi|110805804|ref|YP_689324.1| Holliday junction DNA helicase RuvB [Shigella flexneri 5 str. 8401]
 gi|44888468|sp|Q83KR5|RUVB_SHIFL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|122957400|sp|Q0T3U6|RUVB_SHIF8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|24052206|gb|AAN43427.1| Holliday junction helicase subunit A [Shigella flexneri 2a str.
           301]
 gi|30041523|gb|AAP17251.1| Holliday junction helicase subunit A [Shigella flexneri 2a str.
           2457T]
 gi|110615352|gb|ABF04019.1| Holliday junction helicase [Shigella flexneri 5 str. 8401]
 gi|281601275|gb|ADA74259.1| Holliday junction ATP-dependent DNA helicase ruvB [Shigella
           flexneri 2002017]
 gi|313650644|gb|EFS15046.1| holliday junction DNA helicase RuvB [Shigella flexneri 2a str.
           2457T]
 gi|332756760|gb|EGJ87107.1| holliday junction DNA helicase RuvB [Shigella flexneri 4343-70]
 gi|332757637|gb|EGJ87970.1| holliday junction DNA helicase RuvB [Shigella flexneri 2747-71]
 gi|332758048|gb|EGJ88374.1| holliday junction DNA helicase RuvB [Shigella flexneri K-671]
 gi|332766836|gb|EGJ97037.1| holliday junction DNA helicase RuvB [Shigella flexneri 2930-71]
 gi|333003564|gb|EGK23104.1| holliday junction DNA helicase RuvB [Shigella flexneri VA-6]
 gi|333004731|gb|EGK24253.1| holliday junction DNA helicase RuvB [Shigella flexneri K-218]
 gi|333018629|gb|EGK37923.1| holliday junction DNA helicase RuvB [Shigella flexneri K-304]
          Length = 336

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 196/334 (58%), Positives = 252/334 (75%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S   +  ED     +RP+ LEE+ GQ +  S +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IV R A+  GL ++D+ A E+A R+RGTPRIA RLLRRVRDFAEV H  
Sbjct: 181 LEFYQVPDLQYIVSRSARFMGLEMSDDGAQEVARRARGTPRIANRLLRRVRDFAEVKHDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           TI+ +IA  AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +EPY+IQQGF+QRTPRGR+    AW H GI  P 
Sbjct: 301 LEPYLIQQGFLQRTPRGRMATTRAWNHFGITPPE 334


>gi|119896892|ref|YP_932105.1| Holliday junction DNA helicase RuvB [Azoarcus sp. BH72]
 gi|166231461|sp|A1K313|RUVB_AZOSB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|119669305|emb|CAL93218.1| holliday junction DNA helicase [Azoarcus sp. BH72]
          Length = 352

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 195/319 (61%), Positives = 242/319 (75%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           QEDA    LRP+ L E+ GQ +    L++FI AAK R+EALDHVL  GPPGLGKTTLA +
Sbjct: 24  QEDAVERALRPKRLAEYVGQAKIREQLEIFIHAAKKRSEALDHVLLFGPPGLGKTTLAHI 83

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           VA E+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+EDFQ
Sbjct: 84  VAAEMGVNLRQTSGPVLERAGDLAALLTNLEPHDVLFIDEIHRLSPVVEEILYPALEDFQ 143

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           +D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  ++L  IV 
Sbjct: 144 IDIMIGEGPAARSVKLDLPPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYTPDELGFIVS 203

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A+L  + + D+ A EIA R+RGTPRIA RLLRRVRD+AEV     ITR +ADAAL  L
Sbjct: 204 RSARLLNVEIDDDGALEIARRARGTPRIANRLLRRVRDYAEVKAGGHITRAVADAALRML 263

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D +G D +D + L+ +   FGGGPVG++ ++A + E  D IED+IEPY+IQQG++QRT
Sbjct: 264 DVDSLGLDLMDRKMLSAMLEKFGGGPVGLDNLAAAIGESTDTIEDVIEPYLIQQGYLQRT 323

Query: 314 PRGRLLMPIAWQHLGIDIP 332
           PRGR+     WQH G+  P
Sbjct: 324 PRGRMATHSIWQHFGLAPP 342


>gi|83859805|ref|ZP_00953325.1| Holliday junction DNA helicase RuvB [Oceanicaulis alexandrii
           HTCC2633]
 gi|83852164|gb|EAP90018.1| Holliday junction DNA helicase RuvB [Oceanicaulis alexandrii
           HTCC2633]
          Length = 345

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 203/327 (62%), Positives = 249/327 (76%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           ++S   +  D     LRP + +EF GQ  A +NLKVF +AA  R EALDHVL  GPPGLG
Sbjct: 8   IISAEANPGDGRDKALRPLSFDEFVGQPAAIANLKVFTQAAARRGEALDHVLLSGPPGLG 67

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTTLAQ+VA+ELGVNFR+TSGPVIAKAGDLAA+LTNLE+RDVLFIDEIHRL   VEEILY
Sbjct: 68  KTTLAQIVAKELGVNFRATSGPVIAKAGDLAAILTNLEERDVLFIDEIHRLLPAVEEILY 127

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           PAMEDF LDL++GEGPSAR+V+I+L  FTL+ ATTR GLL  PL+DRFG+P+RL FY  E
Sbjct: 128 PAMEDFCLDLVIGEGPSARTVRIDLPPFTLVGATTRAGLLATPLRDRFGVPVRLEFYSTE 187

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +L  IV R A   G  ++++ A EIA R+RGTPR+AGRLLRRVRDFAE      I  + A
Sbjct: 188 ELSGIVARAANKLGAPMSEDGATEIAKRARGTPRVAGRLLRRVRDFAEEDGVPVINAKAA 247

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           DAAL RL +D +G D LD RYL ++   FGGGP G+ET++A  +E RDA+ED++EP++IQ
Sbjct: 248 DAALRRLEVDAVGLDSLDRRYLRVLIEGFGGGPAGVETLAAACAEARDALEDVVEPFLIQ 307

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           QGFI RTPRGR+    A++HLG  +P 
Sbjct: 308 QGFIMRTPRGRVAAKRAYEHLGFTMPR 334


>gi|197106548|ref|YP_002131925.1| Holliday junction DNA helicase RuvB [Phenylobacterium zucineum
           HLK1]
 gi|238690136|sp|B4R9Z2|RUVB_PHEZH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|196479968|gb|ACG79496.1| Holliday junction DNA helicase RuvB [Phenylobacterium zucineum
           HLK1]
          Length = 344

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 199/311 (63%), Positives = 246/311 (79%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+TL EF GQ +A +NL VFI+AA+ R EALDHVL  GPPGLGKTTLAQ++ARELGVN
Sbjct: 19  LRPQTLSEFVGQEQAKANLSVFIDAARGRGEALDHVLLFGPPGLGKTTLAQILARELGVN 78

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           FR+TSGPV+AKAGDLAA+LTNLE RDVLFIDEIHRL+  VEEILYPAMED  LDL++GEG
Sbjct: 79  FRATSGPVLAKAGDLAAILTNLEPRDVLFIDEIHRLAANVEEILYPAMEDHVLDLVIGEG 138

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSARSV+I+L+ FTL+AATTR GLL  PL+DRFGIP+RL FY  ++L  ++   A   G 
Sbjct: 139 PSARSVRIDLAPFTLVAATTRAGLLATPLRDRFGIPVRLEFYTHDELARVLLGAAAKMGA 198

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +    A EIA R+RGTPR+AGRLLRRVRDFA    A+ I R+ A AAL RL +D++G D
Sbjct: 199 PLDPSGAREIAARARGTPRVAGRLLRRVRDFAAADGAEVIDRKAAAAALARLDVDEVGLD 258

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            LD RYL  +  N+ GGP G+ET++  ++E RDA+ED+IEP+++QQGFIQRTPRGR+   
Sbjct: 259 ALDRRYLRALIENYAGGPAGVETLAYAIAEARDAVEDVIEPFLLQQGFIQRTPRGRMACA 318

Query: 322 IAWQHLGIDIP 332
            A++HLG+  P
Sbjct: 319 KAYEHLGLQAP 329


>gi|254419031|ref|ZP_05032755.1| Holliday junction DNA helicase RuvB [Brevundimonas sp. BAL3]
 gi|196185208|gb|EDX80184.1| Holliday junction DNA helicase RuvB [Brevundimonas sp. BAL3]
          Length = 343

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 202/309 (65%), Positives = 250/309 (80%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+TL EF GQ +A  NLKVFI+AA+ RAEALDHVL  GPPGLGKTTLAQ+VARELGV 
Sbjct: 19  LRPQTLSEFVGQSQAKGNLKVFIDAARGRAEALDHVLLFGPPGLGKTTLAQIVARELGVG 78

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           FR+TSGP++AKAGDLAA+LTNLE RDVLFIDEIHRLS  VEEILYPAMED  LDL++GEG
Sbjct: 79  FRATSGPILAKAGDLAAILTNLEPRDVLFIDEIHRLSPNVEEILYPAMEDHVLDLIIGEG 138

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSARSV+I+L+ FTL+ ATTR GLL  PL+DRFGIP+RL FY  ++L  +V+  A+  G 
Sbjct: 139 PSARSVRIDLAPFTLVGATTRAGLLATPLRDRFGIPLRLEFYTPDELTAVVRGTARKMGA 198

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
           A+ +  A EIA R+RGTPRIAGRLLRRVRDFA    A+TI++ +A  AL RL +D+ G D
Sbjct: 199 AIDEAGAREIASRARGTPRIAGRLLRRVRDFASADGAETISKLVAAKALARLEVDEAGLD 258

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            LD R+L  +  N+GGGPVG++T++A ++E RDA+ED+IEPY++QQGFI RTPRGR+   
Sbjct: 259 SLDRRFLKALIENYGGGPVGMDTLAAAIAEARDAVEDVIEPYLLQQGFIMRTPRGRMACA 318

Query: 322 IAWQHLGID 330
            A+ HLG++
Sbjct: 319 KAYAHLGLN 327


>gi|156933561|ref|YP_001437477.1| Holliday junction DNA helicase RuvB [Cronobacter sakazakii ATCC
           BAA-894]
 gi|166231491|sp|A7MEA3|RUVB_ENTS8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|156531815|gb|ABU76641.1| hypothetical protein ESA_01381 [Cronobacter sakazakii ATCC BAA-894]
          Length = 336

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 194/322 (60%), Positives = 247/322 (76%), Gaps = 1/322 (0%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           V++E AD ++ RP+ LEE+ GQ +  S +++FI+AAK R +ALDH+L  GPPGLGKTTLA
Sbjct: 14  VAEEVADRAI-RPKLLEEYIGQPQVRSQMEIFIQAAKLRGDALDHLLIFGPPGLGKTTLA 72

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS +VEE+LYPAMED
Sbjct: 73  NIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMED 132

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           +QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  RL FY++ DL+ I
Sbjct: 133 YQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVADLQHI 192

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           V R A+  GL + DEA+ E+A RSRGTPRIA RLLRRVRDFAEV H   I + +A  AL 
Sbjct: 193 VSRSARHMGLEMNDEASLEVAKRSRGTPRIANRLLRRVRDFAEVRHDGVINQHVASQALD 252

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED++EP++IQQGF+Q
Sbjct: 253 MLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPFLIQQGFLQ 312

Query: 312 RTPRGRLLMPIAWQHLGIDIPH 333
           RTPRGR+    AW H GI  P 
Sbjct: 313 RTPRGRMATTRAWNHFGITPPQ 334


>gi|283832741|ref|ZP_06352482.1| holliday junction DNA helicase RuvB [Citrobacter youngae ATCC
           29220]
 gi|291072424|gb|EFE10533.1| holliday junction DNA helicase RuvB [Citrobacter youngae ATCC
           29220]
          Length = 336

 Score =  399 bits (1024), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 192/312 (61%), Positives = 242/312 (77%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ LEE+ GQ +  S +++FI+AAK R +ALDH+L  GPPGLGKTTLA +VA E+GVN
Sbjct: 23  IRPKLLEEYIGQPQVRSQMEIFIQAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS +VEE+LYPAMED+QLD+M+GEG
Sbjct: 83  LRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEG 142

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  RL FY++ DL+ IV R A+  GL
Sbjct: 143 PAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVADLQHIVGRSARFMGL 202

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            ++DE A E+A R+RGTPRIA RLLRRVRDFAEV H  TI+ +IA  AL  L +D  GFD
Sbjct: 203 EMSDEGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLNVDAEGFD 262

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   F GGPVG++ ++A + E R+ IED++EPY+IQQGF+QRTPRGR+   
Sbjct: 263 YMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMATV 322

Query: 322 IAWQHLGIDIPH 333
            AW H GI  P 
Sbjct: 323 RAWNHFGITPPE 334


>gi|294669179|ref|ZP_06734259.1| holliday junction DNA helicase RuvB [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291308811|gb|EFE50054.1| holliday junction DNA helicase RuvB [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 343

 Score =  398 bits (1023), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 195/319 (61%), Positives = 243/319 (76%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           SQE+     LRP+ L ++ GQ +A   L++FI+AAK R EALDH L  GPPGLGKTTLA 
Sbjct: 23  SQEEQLERALRPKLLADYIGQHKAKEQLEIFIQAAKKRGEALDHTLLFGPPGLGKTTLAN 82

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++A+ELGVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+
Sbjct: 83  IIAKELGVNLRQTSGPVLERAGDLAALLTNLEPHDVLFIDEIHRLSPVVEEILYPALEDY 142

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           QLD+M+GEGP+ARSVKI+L  FTL+ ATTR G+LTNPL+DRFGI  RL FY   DL TIV
Sbjct: 143 QLDIMIGEGPAARSVKIDLPPFTLVGATTRAGMLTNPLRDRFGIVARLEFYNHADLATIV 202

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           +R A L  L + +  A E+A RSRGTPRIA RLLRRVRD+AEV    +I+ + ADAAL  
Sbjct: 203 RRSAHLLQLDMDESGAMEVAKRSRGTPRIANRLLRRVRDYAEVKGDGSISAKTADAALSM 262

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D +G D +D ++L  +   FGGGPVG+E I+A + E  D IED+IEPY+IQQGF+QR
Sbjct: 263 LDVDAVGLDVMDRKFLEAVLHKFGGGPVGLENIAAAIGESPDTIEDVIEPYLIQQGFLQR 322

Query: 313 TPRGRLLMPIAWQHLGIDI 331
           TPRGR+   I++ H G+ +
Sbjct: 323 TPRGRMATEISYLHFGLPV 341


>gi|59711559|ref|YP_204335.1| Holliday junction DNA helicase B [Vibrio fischeri ES114]
 gi|71649491|sp|Q5E699|RUVB_VIBF1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|59479660|gb|AAW85447.1| ATP-dependent DNA helicase, component of RuvABC resolvasome [Vibrio
           fischeri ES114]
          Length = 337

 Score =  398 bits (1023), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 193/321 (60%), Positives = 246/321 (76%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           +ED     +RP+ L+++ GQ    S +++FI+AA+ R EALDH+L  GPPGLGKTTLA +
Sbjct: 17  EEDVIDRAIRPKKLDDYQGQDHVRSQMEIFIKAAQMREEALDHLLIFGPPGLGKTTLANI 76

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           VA E+GVN R+TSGPV+ KAGDLAALLTNLE+ D+LFIDEIHRLS +VEE+LYPAMED+Q
Sbjct: 77  VANEMGVNIRTTSGPVLEKAGDLAALLTNLEENDILFIDEIHRLSPMVEEVLYPAMEDYQ 136

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           LD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  RL +Y++EDL+ IVQ
Sbjct: 137 LDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEYYKVEDLQHIVQ 196

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A    L++  E A E+A R+RGTPRIA RLLRRVRD+AEV     I+ EIAD AL  L
Sbjct: 197 RSADCLNLSMESEGALEVARRARGTPRIANRLLRRVRDYAEVMSDGNISSEIADKALNML 256

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D  GFD +D + L  I   F GGPVG++ I+A + E RD IED+IEPY+IQQG++QRT
Sbjct: 257 DVDVRGFDYMDRKLLLAIMEKFDGGPVGLDNIAAAIGEERDTIEDVIEPYLIQQGYLQRT 316

Query: 314 PRGRLLMPIAWQHLGIDIPHR 334
           PRGR++   A+ H GID P +
Sbjct: 317 PRGRIVSDRAYLHFGIDKPDK 337


>gi|187927479|ref|YP_001897966.1| Holliday junction DNA helicase RuvB [Ralstonia pickettii 12J]
 gi|241662009|ref|YP_002980369.1| Holliday junction DNA helicase RuvB [Ralstonia pickettii 12D]
 gi|309779819|ref|ZP_07674574.1| holliday junction DNA helicase RuvB [Ralstonia sp. 5_7_47FAA]
 gi|238691842|sp|B2UFL1|RUVB_RALPJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|187724369|gb|ACD25534.1| Holliday junction DNA helicase RuvB [Ralstonia pickettii 12J]
 gi|240864036|gb|ACS61697.1| Holliday junction DNA helicase RuvB [Ralstonia pickettii 12D]
 gi|308921396|gb|EFP67038.1| holliday junction DNA helicase RuvB [Ralstonia sp. 5_7_47FAA]
          Length = 357

 Score =  398 bits (1023), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 195/319 (61%), Positives = 240/319 (75%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
            E+A    LRP+ L+E+ GQ +    L +F+ AAK R+EALDHVL  GPPGLGKTTLA +
Sbjct: 26  NEEAFERALRPKLLDEYVGQEKVRGQLDIFMTAAKNRSEALDHVLLFGPPGLGKTTLAHI 85

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +ARE+GVN R TSGPV+ + GDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+Q
Sbjct: 86  IAREMGVNLRQTSGPVLERPGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDYQ 145

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           +D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY   +L  IV 
Sbjct: 146 IDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTPAELAKIVT 205

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R + L    + DE A EIA RSRGTPRIA RLLRRVRDFAEV     ITRE+ADAAL  L
Sbjct: 206 RSSGLLNAHIVDEGALEIAKRSRGTPRIANRLLRRVRDFAEVKADGIITREVADAALAML 265

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D +GFD +D + L  I   F GGPVGI+ ++A + E RD IED++EPY+IQQG++QRT
Sbjct: 266 DVDAVGFDLMDRKLLEAILHKFNGGPVGIDNLAAAIGEERDTIEDVLEPYLIQQGYLQRT 325

Query: 314 PRGRLLMPIAWQHLGIDIP 332
           PRGR+    A+QH G+  P
Sbjct: 326 PRGRVATASAYQHFGLGAP 344


>gi|91776696|ref|YP_546452.1| Holliday junction DNA helicase B [Methylobacillus flagellatus KT]
 gi|122985393|sp|Q1GYS6|RUVB_METFK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|91710683|gb|ABE50611.1| Holliday junction DNA helicase subunit RuvB [Methylobacillus
           flagellatus KT]
          Length = 345

 Score =  398 bits (1023), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 193/326 (59%), Positives = 249/326 (76%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           S   +QE+A    LRP+ L+E+ GQ +A   L++FI AA+ R+EALDHVL  GPPGLGKT
Sbjct: 11  STQGTQEEALECALRPKVLDEYVGQEKARGQLEIFINAARGRSEALDHVLLFGPPGLGKT 70

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           TLA ++A+E+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA
Sbjct: 71  TLAHIIAKEMGVNMRQTSGPVLERAGDLAALLTNLEPNDVLFIDEIHRLSPVVEEILYPA 130

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           MED++LD+M+GEGP+ARSV+++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  ++L
Sbjct: 131 MEDYRLDIMIGEGPAARSVRLDLPPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYTADEL 190

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             IV R A L  +A+  E A EIA RSRGTPRIA RLLRRVRD+A+V     ++ +IADA
Sbjct: 191 ARIVHRSAGLLEVAIQQEGALEIARRSRGTPRIANRLLRRVRDYAQVKSDGVVSADIADA 250

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL  L +DK+GFD +D + L  +   F GGPVG++ ++A + E RD IED++EPY+IQQG
Sbjct: 251 ALKMLDVDKLGFDVMDRKLLLAVLEKFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQG 310

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIPHR 334
           ++ RTPRGR+    A+QH G+ IP +
Sbjct: 311 YLMRTPRGRIATQQAYQHFGLAIPGK 336


>gi|206580921|ref|YP_002237748.1| Holliday junction DNA helicase RuvB [Klebsiella pneumoniae 342]
 gi|288934606|ref|YP_003438665.1| Holliday junction DNA helicase RuvB [Klebsiella variicola At-22]
 gi|226698780|sp|B5XQ05|RUVB_KLEP3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|206569979|gb|ACI11755.1| Holliday junction DNA helicase RuvB [Klebsiella pneumoniae 342]
 gi|288889315|gb|ADC57633.1| Holliday junction DNA helicase RuvB [Klebsiella variicola At-22]
          Length = 336

 Score =  398 bits (1023), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 198/333 (59%), Positives = 253/333 (75%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S + S  E+A    +RP+ L E+ GQ +  S +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRLVSADSSGAEEAVDRAIRPKLLAEYVGQPQVRSQMEIFIQAAKLRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY+I DL+ IV R A+  GL ++DE A E+A RSRGTPRIA RLLRRVRDFAEV H  
Sbjct: 181 LEFYQIPDLQHIVSRSARHMGLEMSDEGALEVARRSRGTPRIANRLLRRVRDFAEVRHDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           +I+ +IA  AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 SISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           +EPY+IQQGF+QRTPRGR+    AW H GI  P
Sbjct: 301 LEPYLIQQGFLQRTPRGRMATVRAWNHFGITPP 333


>gi|170693378|ref|ZP_02884537.1| Holliday junction DNA helicase RuvB [Burkholderia graminis C4D1M]
 gi|170141533|gb|EDT09702.1| Holliday junction DNA helicase RuvB [Burkholderia graminis C4D1M]
          Length = 354

 Score =  398 bits (1023), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 195/320 (60%), Positives = 242/320 (75%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
            E+A    LRPR LEE+ GQ +    L++FIEAAK R+E+LDHVL  GPPGLGKTTLA +
Sbjct: 21  NEEAFERALRPRQLEEYVGQEKVRGQLEIFIEAAKRRSESLDHVLLFGPPGLGKTTLAHI 80

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +ARE+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+Q
Sbjct: 81  IAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDYQ 140

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           +D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  E+L  IV 
Sbjct: 141 IDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYNAEELARIVT 200

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A L    +  + A EIA R+RGTPRIA RLLRRVRDFAEV     IT E+ADAAL  L
Sbjct: 201 RSASLLNAQIHPDGAFEIAKRARGTPRIANRLLRRVRDFAEVKADGNITAEVADAALRML 260

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D +GFD +D + L  I   F GGPVG++ ++A + E RD IED++EPY+IQQGF+QRT
Sbjct: 261 DVDAVGFDLMDRKLLEAILHKFDGGPVGVDNLAAAIGEERDTIEDVLEPYLIQQGFLQRT 320

Query: 314 PRGRLLMPIAWQHLGIDIPH 333
           PRGR+   + ++H G+  P 
Sbjct: 321 PRGRVATLLTYRHFGLAAPE 340


>gi|330815559|ref|YP_004359264.1| Holliday junction DNA helicase RuvB [Burkholderia gladioli BSR3]
 gi|327367952|gb|AEA59308.1| Holliday junction DNA helicase RuvB [Burkholderia gladioli BSR3]
          Length = 355

 Score =  398 bits (1022), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 195/320 (60%), Positives = 243/320 (75%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           S E+A    LRPR L+E+ GQ +    L++FIEAAK R+EALDHVL  GPPGLGKTTLA 
Sbjct: 20  SHEEAFERALRPRQLDEYVGQEKVRGQLEIFIEAAKRRSEALDHVLLFGPPGLGKTTLAH 79

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++ARE+GVN R TSGPV+ + GDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+
Sbjct: 80  IIAREMGVNLRQTSGPVLERPGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDY 139

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           Q+D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY+   L  IV
Sbjct: 140 QIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYDAGQLSRIV 199

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           QR A L    +  + A EIA RSRGTPRIA RLLRRVRD+AEV     IT E+ADAAL  
Sbjct: 200 QRSASLLQARIDPQGALEIARRSRGTPRIANRLLRRVRDYAEVKADGAITAEVADAALAM 259

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D +GFD +D + L  I   F GGPVG++ ++A + E RD IED++EPY+IQQGF+QR
Sbjct: 260 LDVDPVGFDLMDRKLLEAILHKFDGGPVGVDNLAAAIGEERDTIEDVLEPYLIQQGFLQR 319

Query: 313 TPRGRLLMPIAWQHLGIDIP 332
           TPRGR+   + ++H G+ +P
Sbjct: 320 TPRGRVATLLTYRHFGLPVP 339


>gi|237654484|ref|YP_002890798.1| Holliday junction DNA helicase RuvB [Thauera sp. MZ1T]
 gi|237625731|gb|ACR02421.1| Holliday junction DNA helicase RuvB [Thauera sp. MZ1T]
          Length = 351

 Score =  398 bits (1022), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 196/321 (61%), Positives = 244/321 (76%), Gaps = 1/321 (0%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           QEDA    LRP+ L E+ GQV+    L++FI+AA+ R+EALDHVL  GPPGLGKTTLA +
Sbjct: 25  QEDAIERALRPKRLAEYVGQVKIREQLEIFIQAARNRSEALDHVLLFGPPGLGKTTLAHI 84

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           VA E+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+EDFQ
Sbjct: 85  VAAEMGVNMRQTSGPVLERAGDLAALLTNLEPHDVLFIDEIHRLSPVVEEILYPALEDFQ 144

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           +D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  ++L  IV 
Sbjct: 145 IDIMIGEGPAARSVKLDLPPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYTADELAFIVG 204

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A+L  + + D  A EIA R+RGTPRIA RLLRRVRD+AEV     IT  +ADAAL  L
Sbjct: 205 RSARLLNVEIEDNGALEIARRARGTPRIANRLLRRVRDYAEVKAGGRITAAVADAALRML 264

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D +G D +D + L+ +   FGGGPVG++ I+A + E  D IED+IEPY+IQQG++QRT
Sbjct: 265 DVDNLGLDLMDRKLLSAMLEKFGGGPVGLDNIAAAIGESTDTIEDVIEPYLIQQGYLQRT 324

Query: 314 PRGRLLMPIAWQHLGIDIPHR 334
           PRGR+     WQH G+ +P R
Sbjct: 325 PRGRMATQSIWQHFGL-VPPR 344


>gi|224827247|ref|ZP_03700341.1| Holliday junction DNA helicase RuvB [Lutiella nitroferrum 2002]
 gi|224600536|gb|EEG06725.1| Holliday junction DNA helicase RuvB [Lutiella nitroferrum 2002]
          Length = 344

 Score =  398 bits (1022), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 194/317 (61%), Positives = 240/317 (75%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           +QE+A    LRP+ L+++ GQ +A   L++FIEAAK R EALDHVL  GPPGLGKTTLA 
Sbjct: 24  AQEEALERALRPKALDDYVGQKKAREQLEIFIEAAKKRGEALDHVLLFGPPGLGKTTLAH 83

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           +VARE+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+
Sbjct: 84  IVAREMGVNLRQTSGPVLERAGDLAALLTNLEPHDVLFIDEIHRLSPVVEEILYPALEDY 143

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           Q+D+M+GEGP+ARSVKI+L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  E+L  IV
Sbjct: 144 QIDIMIGEGPAARSVKIDLPPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTPEELTRIV 203

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R A L  + + D  A E+A RSRGTPRIA RLLRRVRD+AEV     +T  +ADAAL  
Sbjct: 204 SRSAGLLNVTLADNGAFEVARRSRGTPRIANRLLRRVRDYAEVKADGVVTATVADAALAM 263

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D  G D +D + L  I   F GGPVG++ ++A + E  D IED+IEPY+IQQG++QR
Sbjct: 264 LDVDPAGLDVMDRKLLAAILEKFAGGPVGLDNVAAAIGESSDTIEDVIEPYLIQQGYLQR 323

Query: 313 TPRGRLLMPIAWQHLGI 329
           TPRGR+    A+QH G+
Sbjct: 324 TPRGRMATAQAYQHFGL 340


>gi|254294745|ref|YP_003060768.1| Holliday junction DNA helicase RuvB [Hirschia baltica ATCC 49814]
 gi|254043276|gb|ACT60071.1| Holliday junction DNA helicase RuvB [Hirschia baltica ATCC 49814]
          Length = 345

 Score =  398 bits (1022), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 201/332 (60%), Positives = 248/332 (74%), Gaps = 2/332 (0%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M R+G ++    Q    I   LRP + ++FTGQ  A +NLKVF++AA+ R +ALDHVL  
Sbjct: 3   MGRDGDITDPTRQPGETIDRALRPLSFDDFTGQASAKANLKVFVQAARNRGDALDHVLLF 62

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ+V+RE+GV FRSTSGPVI KAGDLAALLTNLE+ DVLFIDEIHRLS +
Sbjct: 63  GPPGLGKTTLAQIVSREMGVGFRSTSGPVIGKAGDLAALLTNLEENDVLFIDEIHRLSPV 122

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILYPAMED  LD+M+G+GPSARSVKI+L  FTL+ ATTR GLL+ PL+DRFGIP+RL
Sbjct: 123 VEEILYPAMEDHTLDIMIGDGPSARSVKIDLPPFTLVGATTRAGLLSTPLRDRFGIPVRL 182

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  E+L  IV +     G  +T+  A EIA R+RGTPRIA RLLRRVRDFAE  + + 
Sbjct: 183 EFYTPEELGGIVFKAGIKMGAEITESGAIEIARRARGTPRIAIRLLRRVRDFAEADNVQ- 241

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I +  A   L RL +D  G D LD RYL  + + + GGPVG +T++A LSE RDAIE++I
Sbjct: 242 IDKASASKGLARLEVDSDGLDALDRRYLNALVKTYSGGPVGADTLAAALSEARDAIEEVI 301

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EPY++QQG + RTPRGR+  P A+Q LG+  P
Sbjct: 302 EPYLMQQGLVARTPRGRVAAPGAYQRLGMPTP 333


>gi|187732707|ref|YP_001879637.1| Holliday junction DNA helicase RuvB [Shigella boydii CDC 3083-94]
 gi|238691714|sp|B2TWQ1|RUVB_SHIB3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|187429699|gb|ACD08973.1| Holliday junction DNA helicase RuvB [Shigella boydii CDC 3083-94]
          Length = 336

 Score =  398 bits (1022), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 195/334 (58%), Positives = 252/334 (75%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S   +  ED     +RP+ LEE+ GQ +  S +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+++GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIIIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IV R A+  GL ++D+ A E+A R+RGTPRIA RLLRRVRDFAEV H  
Sbjct: 181 LEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           TI+ +IA  AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +EPY+IQQGF+QRTPRGR+    AW H GI  P 
Sbjct: 301 LEPYLIQQGFLQRTPRGRMATTRAWNHFGITPPE 334


>gi|114327765|ref|YP_744922.1| Holliday junction DNA helicase RuvB [Granulibacter bethesdensis
           CGDNIH1]
 gi|122327269|sp|Q0BT53|RUVB_GRABC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|114315939|gb|ABI61999.1| holliday junction DNA helicase ruvB [Granulibacter bethesdensis
           CGDNIH1]
          Length = 359

 Score =  398 bits (1022), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 206/328 (62%), Positives = 254/328 (77%), Gaps = 4/328 (1%)

Query: 9   SRNVS----QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           +R VS    ++DA  + LRP++L EF GQ  +  NL +FI+AAKAR EA+DHVL  GPPG
Sbjct: 10  NRTVSSVRLEDDAAEASLRPQSLAEFIGQRASRENLSIFIQAAKARGEAMDHVLLHGPPG 69

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLAQ+V+RELGV FR+TSGPVI +AGDLAA+LTNL+ RDVLFIDEIHRL   +EE+
Sbjct: 70  LGKTTLAQIVSRELGVGFRATSGPVIQRAGDLAAILTNLQPRDVLFIDEIHRLQPAIEEV 129

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPAMEDFQLDL++GEGP+ARSV+I+L+ FTL+AATTR GLL  PL+DRFGIP+RL FY 
Sbjct: 130 LYPAMEDFQLDLIIGEGPAARSVRIDLAPFTLVAATTRAGLLATPLRDRFGIPLRLIFYT 189

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
             +L+ IV RGA+  G  ++ E A EIA RSRGTPRIAGRLLRRVRDFA V     + R 
Sbjct: 190 ASELELIVSRGAEKLGFDLSREGAAEIARRSRGTPRIAGRLLRRVRDFAMVQGVSPVDRS 249

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
            ADAAL RL +D +G D +D RYL  IA +  GGPVG+ET++A L+E RD +ED+IEPY+
Sbjct: 250 TADAALQRLEVDSLGLDAMDRRYLHRIAVHHAGGPVGVETLAAALAEARDTLEDVIEPYL 309

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           IQ+G I RT RGR+L    W+HLG+  P
Sbjct: 310 IQEGLILRTSRGRMLGEAGWRHLGLVPP 337


>gi|296101801|ref|YP_003611947.1| Holliday junction DNA helicase RuvB [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295056260|gb|ADF60998.1| Holliday junction DNA helicase RuvB [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 336

 Score =  397 bits (1021), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 196/333 (58%), Positives = 252/333 (75%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S    Q D  +   +RP+ L+E+ GQ +  S +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRLVSAGTIQADDVVDRAIRPKLLDEYIGQPQVRSQMEIFIQAAKLRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IV R A+  GL +++E A E+A RSRGTPRIA RLLRRVRDFAEV H  
Sbjct: 181 LEFYQVADLQHIVGRSARYMGLDMSEEGAFEVAKRSRGTPRIANRLLRRVRDFAEVKHDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           +I+ EIA  AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 SISAEIAAQALDMLNVDAEGFDYMDRKLLLAVLDKFFGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           +EPY+IQQGF+QRTPRGR+    AW H GI  P
Sbjct: 301 LEPYLIQQGFLQRTPRGRMATVRAWNHFGITPP 333


>gi|157145361|ref|YP_001452680.1| Holliday junction DNA helicase RuvB [Citrobacter koseri ATCC
           BAA-895]
 gi|166231482|sp|A8AFI1|RUVB_CITK8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|157082566|gb|ABV12244.1| hypothetical protein CKO_01101 [Citrobacter koseri ATCC BAA-895]
          Length = 336

 Score =  397 bits (1021), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 196/334 (58%), Positives = 252/334 (75%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S   +Q E+     +RP+ LEE+ GQ +  S +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRLISAGGTQVEEVADRAIRPKLLEEYIGQPQVRSQMEIFIQAAKLRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IV R A+  GL ++DE A E+A R+RGTPRIA RLLRRVRDFAEV H  
Sbjct: 181 LEFYQVPDLQHIVGRSARFMGLEMSDEGALEVARRARGTPRIANRLLRRVRDFAEVKHNG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I+ +IA  AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 AISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +EPY+IQQGF+QRTPRGR+    AW H GI  P 
Sbjct: 301 LEPYLIQQGFLQRTPRGRMATVRAWNHFGITPPE 334


>gi|209543385|ref|YP_002275614.1| Holliday junction DNA helicase RuvB [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209531062|gb|ACI50999.1| Holliday junction DNA helicase RuvB [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 348

 Score =  397 bits (1021), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 206/326 (63%), Positives = 254/326 (77%), Gaps = 2/326 (0%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           +RN   EDA  + LRP+TL++FTGQ  +  NL +FI AA+ R EA+DHVL  GPPGLGKT
Sbjct: 12  ARNA--EDAAEAGLRPQTLDDFTGQKASRENLAIFIAAARQRGEAMDHVLLHGPPGLGKT 69

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           TLAQ+VARELGV FR+TSGPVI +AGDLAA+LTNL+ RDVLFIDEIHRL   +EE+LYPA
Sbjct: 70  TLAQIVARELGVGFRATSGPVIQRAGDLAAILTNLQPRDVLFIDEIHRLQPAIEEVLYPA 129

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           MEDFQLDL++GEGP+ARSV+I+LS FTL+AATTR GLL  PL+DRFGIP+RL FY  ++L
Sbjct: 130 MEDFQLDLIIGEGPAARSVRIDLSPFTLVAATTRAGLLATPLRDRFGIPLRLVFYTPDEL 189

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           + IV RGA+     +T E A EIA RSRGTPRIAGRLLRRVRDFA V     + R +ADA
Sbjct: 190 RQIVSRGARKLEFDLTPEGAEEIARRSRGTPRIAGRLLRRVRDFASVTRGGPVDRAMADA 249

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL RL +D +G D +D RYL  IA +  GGPVG+ET++A L+E RD +ED++EPY+IQ+G
Sbjct: 250 ALSRLEVDSLGLDGMDRRYLRRIAEHHHGGPVGVETLAAALAEARDTLEDVVEPYLIQEG 309

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIPHR 334
            + RT RGR+L    W+HLG+  P R
Sbjct: 310 LVLRTSRGRMLGERGWRHLGLAPPPR 335


>gi|238026245|ref|YP_002910476.1| Holliday junction DNA helicase RuvB [Burkholderia glumae BGR1]
 gi|237875439|gb|ACR27772.1| Holliday junction DNA helicase RuvB [Burkholderia glumae BGR1]
          Length = 355

 Score =  397 bits (1021), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 195/320 (60%), Positives = 241/320 (75%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           S E+A    LRPR L+E+ GQ +    L++FIEAAK RAEALDHVL  GPPGLGKTTLA 
Sbjct: 20  SHEEAFERALRPRQLDEYVGQEKVRGQLEIFIEAAKRRAEALDHVLLFGPPGLGKTTLAH 79

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           +VARE+GVN R TSGPV+ + GDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+
Sbjct: 80  IVAREMGVNLRQTSGPVLERPGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDY 139

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           Q+D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY+   L  IV
Sbjct: 140 QIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYDASQLSRIV 199

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           QR A L    +    A EIA R+RGTPRIA RLLRRVRD+AEV     IT  +ADAAL  
Sbjct: 200 QRSASLLNARIDPHGALEIARRARGTPRIANRLLRRVRDYAEVKADGEITERVADAALAM 259

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D +GFD +D + L  I   F GGPVG++ ++A + E RD IED++EPY+IQQGF+QR
Sbjct: 260 LDVDPVGFDLMDRKLLEAILHKFDGGPVGVDNLAAAIGEERDTIEDVLEPYLIQQGFLQR 319

Query: 313 TPRGRLLMPIAWQHLGIDIP 332
           TPRGR+   + ++H G+ +P
Sbjct: 320 TPRGRVATLLTYRHFGLPVP 339


>gi|212635162|ref|YP_002311687.1| Holliday junction DNA helicase RuvB [Shewanella piezotolerans WP3]
 gi|226725464|sp|B8CNY1|RUVB_SHEPW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|212556646|gb|ACJ29100.1| Holliday junction DNA helicase RuvB [Shewanella piezotolerans WP3]
          Length = 336

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 191/312 (61%), Positives = 244/312 (78%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L+E+TGQ +  + LK+FIEAA+ R EALDH+L  GPPGLGKTTLA +VA E+GVN
Sbjct: 23  MRPKLLDEYTGQDDTRAQLKIFIEAAQKRGEALDHMLIYGPPGLGKTTLAMIVANEMGVN 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            +STSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS +VEEILYPAMED+QLD+M+GEG
Sbjct: 83  IKSTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPVVEEILYPAMEDYQLDIMIGEG 142

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+K++L  FTL+ ATT+ G LT+PL+ RFGIP+RL FY I+DL TIV R AK+  L
Sbjct: 143 PAARSIKLDLPPFTLVGATTQAGSLTSPLRARFGIPLRLEFYNIKDLSTIVIRSAKVMEL 202

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + +E A EIA RSRGTPRIA RLLRRVRDFAEV H+  +T+ +A+ AL  L +D  GFD
Sbjct: 203 EIDEEGAIEIARRSRGTPRIANRLLRRVRDFAEVKHSGAVTKVVAELALDMLDVDAEGFD 262

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  I   F GGPVG++ ++A + E R+ IED++EP++IQQGF+QRTPRGR+   
Sbjct: 263 YMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETIEDVLEPFLIQQGFVQRTPRGRIATQ 322

Query: 322 IAWQHLGIDIPH 333
            A+ H  +  P 
Sbjct: 323 RAYNHFNLIQPE 334


>gi|163751785|ref|ZP_02159002.1| Holliday junction DNA helicase RuvB [Shewanella benthica KT99]
 gi|161328349|gb|EDP99509.1| Holliday junction DNA helicase RuvB [Shewanella benthica KT99]
          Length = 339

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 193/313 (61%), Positives = 242/313 (77%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L+E+TGQ    + LKVFI+AAK R EALDH+L  GPPGLGKTTLA +VA E+GVN
Sbjct: 26  MRPKLLDEYTGQDATRAQLKVFIQAAKNRGEALDHMLIYGPPGLGKTTLALIVANEMGVN 85

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            +STSGPV+ KAGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPAMED+QLD+M+GEG
Sbjct: 86  IKSTSGPVLEKAGDLAALLTNLESGDVLFIDEIHRLSPVVEEILYPAMEDYQLDIMIGEG 145

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+K++L  FTLI ATTR G LT+PL+ RFGIP+RL FY ++DL TIV R AK+  L
Sbjct: 146 PAARSIKLDLPPFTLIGATTRAGALTSPLRSRFGIPLRLEFYNVKDLSTIVTRSAKVLEL 205

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + +E + EIA RSRGTPRIA RLLRRVRD+AEV H   I + +AD AL  L +D  GFD
Sbjct: 206 PIDEEGSLEIARRSRGTPRIANRLLRRVRDYAEVKHDGEINKHVADLALEMLDVDVEGFD 265

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + +  I   F GGPVG++ ++A + E R+ IED++EP++IQQGFIQRTPRGR+   
Sbjct: 266 YMDRKLMLAIIDKFMGGPVGLDNLAAAIGEERETIEDVLEPFLIQQGFIQRTPRGRIATQ 325

Query: 322 IAWQHLGIDIPHR 334
            A+QH  +  P +
Sbjct: 326 RAYQHFNLIQPEQ 338


>gi|187925319|ref|YP_001896961.1| Holliday junction DNA helicase RuvB [Burkholderia phytofirmans
           PsJN]
 gi|238689584|sp|B2SYK2|RUVB_BURPP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|187716513|gb|ACD17737.1| Holliday junction DNA helicase RuvB [Burkholderia phytofirmans
           PsJN]
          Length = 354

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 194/319 (60%), Positives = 242/319 (75%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
            E+A    LRPR LEE+ GQ +    L++FIEAAK R+E+LDHVL  GPPGLGKTTLA +
Sbjct: 21  NEEAFERALRPRQLEEYVGQEKVRGQLEIFIEAAKRRSESLDHVLLFGPPGLGKTTLAHI 80

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +ARE+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+Q
Sbjct: 81  IAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDYQ 140

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           +D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  E+L  IV 
Sbjct: 141 IDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYNAEELARIVT 200

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A L    +  + A EIA R+RGTPRIA RLLRRVRDFAEV     IT ++ADAAL  L
Sbjct: 201 RSASLLNAQIHPDGAFEIAKRARGTPRIANRLLRRVRDFAEVKADGNITAQVADAALKML 260

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D +GFD +D + L  I   F GGPVG++ ++A + E RD IED++EPY+IQQGF+QRT
Sbjct: 261 DVDAVGFDLMDRKLLEAILHKFDGGPVGVDNLAAAIGEERDTIEDVLEPYLIQQGFLQRT 320

Query: 314 PRGRLLMPIAWQHLGIDIP 332
           PRGR+   + ++H G+  P
Sbjct: 321 PRGRVATLLTYRHFGLAAP 339


>gi|73540189|ref|YP_294709.1| Holliday junction DNA helicase B [Ralstonia eutropha JMP134]
 gi|97190244|sp|Q475R8|RUVB_RALEJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|72117602|gb|AAZ59865.1| Holliday junction DNA helicase subunit RuvB [Ralstonia eutropha
           JMP134]
          Length = 352

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 193/321 (60%), Positives = 245/321 (76%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           S+E+A    LRP+ L+E+ GQ +    L +F+ AA+ R EALDHVL  GPPGLGKTTLA 
Sbjct: 21  SREEAFERALRPKLLDEYVGQEKVRGQLDIFMHAARNRREALDHVLLFGPPGLGKTTLAH 80

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++ARE+GVN R TSGPV+ + GDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+
Sbjct: 81  IIAREMGVNLRQTSGPVLERPGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDY 140

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           Q+D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  E+L  IV
Sbjct: 141 QIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTAEELARIV 200

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R A+L G  +    + EIA R+RGTPRIA RLLRRVRD+AEV    TITREIADAAL  
Sbjct: 201 TRSAQLLGAHIDPLGSLEIARRARGTPRIANRLLRRVRDYAEVKGDGTITREIADAALAM 260

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D++GFD +D + L  +   FGGGPVG++ ++A + E RD IED++EPY+IQQG++QR
Sbjct: 261 LDVDRVGFDLMDRKLLEAVLHKFGGGPVGVDNLAAAIGEERDTIEDVLEPYLIQQGYLQR 320

Query: 313 TPRGRLLMPIAWQHLGIDIPH 333
           TPRGR+    A++H G+  P 
Sbjct: 321 TPRGRVATAAAYRHFGLASPQ 341


>gi|290508807|ref|ZP_06548178.1| Holliday junction DNA helicase RuvB [Klebsiella sp. 1_1_55]
 gi|289778201|gb|EFD86198.1| Holliday junction DNA helicase RuvB [Klebsiella sp. 1_1_55]
          Length = 336

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 194/318 (61%), Positives = 244/318 (76%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E+A    +RP+ L E+ GQ +  S +++FI+AAK R +ALDH+L  GPPGLGKTTLA +V
Sbjct: 16  EEAVDRAIRPKLLAEYVGQPQVRSQMEIFIQAAKLRGDALDHLLIFGPPGLGKTTLANIV 75

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS +VEE+LYPAMED+QL
Sbjct: 76  ANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQL 135

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  RL FY+I DL+ IV R
Sbjct: 136 DIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQIPDLQHIVSR 195

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A+  GL ++DE A E+A RSRGTPRIA RLLRRVRDFAEV H  +I+ +IA  AL  L 
Sbjct: 196 SARHMGLEMSDEGALEVARRSRGTPRIANRLLRRVRDFAEVRHDGSISADIAAQALDMLN 255

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED++EPY+IQQGF+QRTP
Sbjct: 256 VDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTP 315

Query: 315 RGRLLMPIAWQHLGIDIP 332
           RGR+    AW H GI  P
Sbjct: 316 RGRMATVRAWNHFGITPP 333


>gi|261340246|ref|ZP_05968104.1| holliday junction DNA helicase RuvB [Enterobacter cancerogenus ATCC
           35316]
 gi|288317331|gb|EFC56269.1| holliday junction DNA helicase RuvB [Enterobacter cancerogenus ATCC
           35316]
          Length = 336

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 193/318 (60%), Positives = 244/318 (76%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           ED     +RP+ L+E+ GQ +  S +++FI+AAK R +ALDH+L  GPPGLGKTTLA +V
Sbjct: 16  EDVVDRAIRPKLLDEYIGQPQVRSQMEIFIQAAKLRGDALDHLLIFGPPGLGKTTLANIV 75

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS +VEE+LYPAMED+QL
Sbjct: 76  ANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQL 135

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  RL FY++ DL+ IV R
Sbjct: 136 DIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQHIVGR 195

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A+  GL +++E A E+A RSRGTPRIA RLLRRVRDFAEV H  +I+ +IA  AL  L 
Sbjct: 196 SARFMGLEMSEEGAYEVAKRSRGTPRIANRLLRRVRDFAEVKHDGSISADIAAQALDMLN 255

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D  GFD +D + L  I   F GGPVG++ ++A + E R+ IED++EPY+IQQGF+QRTP
Sbjct: 256 VDAEGFDYMDRKLLLAILDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTP 315

Query: 315 RGRLLMPIAWQHLGIDIP 332
           RGR+    AW H GI  P
Sbjct: 316 RGRMATARAWDHFGITPP 333


>gi|167571208|ref|ZP_02364082.1| Holliday junction DNA helicase B [Burkholderia oklahomensis C6786]
          Length = 356

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 194/320 (60%), Positives = 243/320 (75%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           + E+A    LRPR L+E+ GQ +    L++FIEAAK R+EALDHVL  GPPGLGKTTLA 
Sbjct: 20  THEEAFERALRPRQLDEYVGQEKVRDQLEIFIEAAKRRSEALDHVLLFGPPGLGKTTLAH 79

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++ARE+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+
Sbjct: 80  IIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDY 139

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           Q+D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY+ E L  IV
Sbjct: 140 QIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYDAEQLSRIV 199

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           +R A L    +    A EIA RSRGTPRIA RLLRRVRD+AEV    +IT  +ADAAL  
Sbjct: 200 RRSAALLNAQIDPNGALEIAKRSRGTPRIANRLLRRVRDYAEVRADGSITVAVADAALAM 259

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D +GFD +D + L  I   F GGPVG++ ++A + E RD IED++EPY+IQQGF+QR
Sbjct: 260 LDVDPVGFDLMDRKLLEAILHKFDGGPVGVDNLAAAIGEERDTIEDVLEPYLIQQGFLQR 319

Query: 313 TPRGRLLMPIAWQHLGIDIP 332
           TPRGR+   + ++H G+  P
Sbjct: 320 TPRGRVATLLTYRHFGLSAP 339


>gi|260598335|ref|YP_003210906.1| Holliday junction DNA helicase RuvB [Cronobacter turicensis z3032]
 gi|260217512|emb|CBA31689.1| Holliday junction ATP-dependent DNA helicase ruvB [Cronobacter
           turicensis z3032]
          Length = 336

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 193/322 (59%), Positives = 247/322 (76%), Gaps = 1/322 (0%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           V++E AD ++ RP+ L+E+ GQ +  S +++FI+AAK R +ALDH+L  GPPGLGKTTLA
Sbjct: 14  VAEEVADRAM-RPKLLDEYIGQPQVRSQMEIFIQAAKLRGDALDHLLIFGPPGLGKTTLA 72

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS +VEE+LYPAMED
Sbjct: 73  NIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMED 132

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           +QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  RL FY++ DL+ I
Sbjct: 133 YQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVADLQHI 192

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           V R A+  GL + DEA+ E+A RSRGTPRIA RLLRRVRDFAEV H   I + +A  AL 
Sbjct: 193 VSRSARHMGLEMNDEASFEVAKRSRGTPRIANRLLRRVRDFAEVRHDGVINQHVASLALD 252

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED++EP++IQQGF+Q
Sbjct: 253 MLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPFLIQQGFLQ 312

Query: 312 RTPRGRLLMPIAWQHLGIDIPH 333
           RTPRGR+    AW H GI  P 
Sbjct: 313 RTPRGRMATTRAWNHFGITPPQ 334


>gi|290475278|ref|YP_003468166.1| Holliday junction helicase subunit B [Xenorhabdus bovienii SS-2004]
 gi|289174599|emb|CBJ81393.1| Holliday junction helicase, subunit B [Xenorhabdus bovienii
           SS-2004]
          Length = 335

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 193/330 (58%), Positives = 252/330 (76%), Gaps = 1/330 (0%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S  V Q+D  I   +RP+ L E+ GQ   C  +++FI+AA+ R +ALDH+L 
Sbjct: 1   MIEADRLISAEVLQDDEVIDRAIRPKLLSEYVGQPHVCEQMEIFIQAARQRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPAMED+QLDLM+GEGP+ARS+KI+L  FTL+ ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEILYPAMEDYQLDLMIGEGPAARSIKIDLPPFTLVGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY ++DL++IV R A+  GL +++E A +IAMRSRGTPRI  RLLRRVRDF++V    
Sbjct: 181 LEFYNVDDLQSIVSRSARYMGLGISEEGARQIAMRSRGTPRITNRLLRRVRDFSQVKGDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           +I  +IA  AL  L++D  GFD LD + L  I   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 SINGDIAVQALDMLSVDSAGFDYLDRKLLIAIIDKFMGGPVGVDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           +EP++IQQGFIQRTPRGR+    A++H G+
Sbjct: 301 LEPFLIQQGFIQRTPRGRIATNHAYRHFGL 330


>gi|300723092|ref|YP_003712390.1| Holliday junction helicase subunit B [Xenorhabdus nematophila ATCC
           19061]
 gi|297629607|emb|CBJ90210.1| Holliday junction helicase, subunit B [Xenorhabdus nematophila ATCC
           19061]
          Length = 335

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 192/330 (58%), Positives = 249/330 (75%), Gaps = 1/330 (0%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S  + Q+D  I   +RP+ L E+ GQ   C  +++FI+AA+ R +ALDH+L 
Sbjct: 1   MIEADRLVSAEILQDDEAIDRAIRPKFLSEYVGQPHVCEQMEIFIQAARQRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPAMED+QLD+M+GEGP+ARS+KI+L  FTL+ ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLVGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY + DL++IV R A   GL ++D+ A +IAMRSRGTPRI  RLLRRVRDFAEV    
Sbjct: 181 LEFYNVNDLQSIVSRSAHYMGLNISDDGARQIAMRSRGTPRITNRLLRRVRDFAEVKGDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           ++  +IA  AL  L +D  GFD LD + L  I   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 SVNSDIAAQALNMLNVDSAGFDYLDRKLLVAIIDKFMGGPVGVDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           +EP++IQQGFIQRTPRGR+    A++H G+
Sbjct: 301 LEPFLIQQGFIQRTPRGRIATNHAYRHFGL 330


>gi|34499670|ref|NP_903885.1| Holliday junction DNA helicase RuvB [Chromobacterium violaceum ATCC
           12472]
 gi|44888391|sp|Q7NQC5|RUVB_CHRVO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|34105521|gb|AAQ61875.1| holliday junction DNA helicase ruvB [Chromobacterium violaceum ATCC
           12472]
          Length = 345

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 194/323 (60%), Positives = 242/323 (74%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
            R   QE+A    LRP+ L+E+ GQ +A   L++FIEAAK R EALDHVL  GPPGLGKT
Sbjct: 20  QRASEQEEALERALRPKLLDEYVGQKKAREQLEIFIEAAKKRGEALDHVLLFGPPGLGKT 79

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           TLA +VARE+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA
Sbjct: 80  TLAHIVAREMGVNLRQTSGPVLERAGDLAALLTNLEPHDVLFIDEIHRLSPVVEEILYPA 139

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +ED+Q+D+M+GEGP+ARSVKI+L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  E+L
Sbjct: 140 LEDYQIDIMIGEGPAARSVKIDLPPFTLVGATTRAGMLTNPLRDRFGIVARLEFYNAEEL 199

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             IV R A L  + ++D+ A E+A RSRGTPRIA RLLRRVRD+AEV     +T  +ADA
Sbjct: 200 TRIVSRSAGLLNVQLSDDGAFEVAKRSRGTPRIANRLLRRVRDYAEVKSDGVVTMAVADA 259

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL  L +D  G D +D + L  I   F GGPVG++ ++A + E  D IED+IEP++IQQG
Sbjct: 260 ALAMLDVDPAGLDVMDRKLLQAILEKFSGGPVGLDNVAAAIGESTDTIEDVIEPFLIQQG 319

Query: 309 FIQRTPRGRLLMPIAWQHLGIDI 331
           ++QRTPRGR+    A+ H G+ +
Sbjct: 320 YLQRTPRGRMATAQAYLHFGLPV 342


>gi|162146623|ref|YP_001601082.1| Holliday junction DNA helicase RuvB [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161785198|emb|CAP54744.1| Holliday junction ATP-dependent DNA helicase ruvB
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 348

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 204/322 (63%), Positives = 251/322 (77%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           + EDA  + LRP+TL++FTGQ  +  NL +FI AA+ R EA+DHVL  GPPGLGKTTLAQ
Sbjct: 14  NAEDAAEAGLRPQTLDDFTGQKASRENLAIFIAAARQRGEAMDHVLLHGPPGLGKTTLAQ 73

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           +VARELGV FR+TSGPVI +AGDLAA+LTNL+ RDVLFIDEIHRL   +EE+LYPAMEDF
Sbjct: 74  IVARELGVGFRATSGPVIQRAGDLAAILTNLQPRDVLFIDEIHRLQPAIEEVLYPAMEDF 133

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           QLDL++GEGP+ARSV+I+LS FTL+AATTR GLL  PL+DRFGIP+RL FY  ++L+ IV
Sbjct: 134 QLDLIIGEGPAARSVRIDLSPFTLVAATTRAGLLATPLRDRFGIPLRLVFYTPDELRQIV 193

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            RGA+     +T E A EIA RSRGTPRIAGRLLRRVRDFA V     + R +ADAAL R
Sbjct: 194 SRGARKLEFDLTPEGAEEIARRSRGTPRIAGRLLRRVRDFASVTRGGPVDRAMADAALSR 253

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D +G D +D RYL  IA +  GGPVG+ET++A L+E RD +ED++EPY+IQ+G + R
Sbjct: 254 LEVDSLGLDGMDRRYLRRIAEHHHGGPVGVETLAAALAEARDTLEDVVEPYLIQEGLVLR 313

Query: 313 TPRGRLLMPIAWQHLGIDIPHR 334
           T RGR L    W+HLG+  P R
Sbjct: 314 TSRGRTLGERGWRHLGLAPPPR 335


>gi|283785599|ref|YP_003365464.1| holliday junction ATP-dependent DNA helicase [Citrobacter rodentium
           ICC168]
 gi|282949053|emb|CBG88656.1| holliday junction ATP-dependent DNA helicase [Citrobacter rodentium
           ICC168]
          Length = 336

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 193/322 (59%), Positives = 249/322 (77%), Gaps = 1/322 (0%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
            +++E AD ++ RP+ L+E+ GQ +  S +++FI+AAK R +ALDH+L  GPPGLGKTTL
Sbjct: 13  TIAEEVADRAI-RPKLLDEYIGQPQVRSQMEIFIQAAKLRGDALDHLLIFGPPGLGKTTL 71

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           A +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS +VEE+LYPAME
Sbjct: 72  ANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAME 131

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           D+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  RL FY++ DL+ 
Sbjct: 132 DYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQH 191

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           IV R A+  GL ++++ A E+A R+RGTPRIA RLLRRVRDFAEV H  TI+ EIA  AL
Sbjct: 192 IVGRSARFMGLEMSEDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISAEIAAQAL 251

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
             L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED++EPY+IQQGF+
Sbjct: 252 DMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFL 311

Query: 311 QRTPRGRLLMPIAWQHLGIDIP 332
           QRTPRGR+    AW H GI  P
Sbjct: 312 QRTPRGRMATVRAWNHFGITPP 333


>gi|295677648|ref|YP_003606172.1| Holliday junction DNA helicase RuvB [Burkholderia sp. CCGE1002]
 gi|295437491|gb|ADG16661.1| Holliday junction DNA helicase RuvB [Burkholderia sp. CCGE1002]
          Length = 353

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 194/319 (60%), Positives = 243/319 (76%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
            E+A    LRPR L+E+ GQ +    L++FIEAAK R+E+LDHVL  GPPGLGKTTLA +
Sbjct: 21  NEEAFERALRPRQLDEYVGQEKVRGQLEIFIEAAKRRSESLDHVLLFGPPGLGKTTLAHI 80

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +ARE+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+Q
Sbjct: 81  IAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDYQ 140

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           +D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  E+L  IV 
Sbjct: 141 IDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYNAEELARIVT 200

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A L G  +  + A EIA R+RGTPRIA RLLRRVRDFAEV     IT ++ADAAL  L
Sbjct: 201 RSAALLGAQIHPDGAFEIARRARGTPRIANRLLRRVRDFAEVKADGNITAQVADAALSML 260

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D +GFD +D + L  I   F GGPVG++ ++A + E RD IED++EPY+IQQGF+QRT
Sbjct: 261 DVDAVGFDLMDRKLLEAILYKFDGGPVGVDNLAAAIGEERDTIEDVLEPYLIQQGFLQRT 320

Query: 314 PRGRLLMPIAWQHLGIDIP 332
           PRGR+   + ++H G+  P
Sbjct: 321 PRGRVATLLTYRHFGLAAP 339


>gi|257095746|ref|YP_003169387.1| Holliday junction DNA helicase RuvB [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257048270|gb|ACV37458.1| Holliday junction DNA helicase RuvB [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 354

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 194/318 (61%), Positives = 244/318 (76%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           +QE+A    LRPR L ++ GQ +    L +FIEAA+ R + LDHVL  GPPGLGKTTLA 
Sbjct: 23  TQEEAIERALRPRCLADYVGQAKIREQLSIFIEAARRRNDTLDHVLLFGPPGLGKTTLAH 82

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           +VA E+GVN RSTSGPV+ +AGDLAA+LTNLE RDVLFIDEIHRLS +VEEILYPA+EDF
Sbjct: 83  IVAAEMGVNLRSTSGPVLERAGDLAAILTNLEPRDVLFIDEIHRLSPVVEEILYPALEDF 142

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           Q+D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  E+L  IV
Sbjct: 143 QIDIMIGEGPAARSVKLDLPPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYTPEELTLIV 202

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R ++L  + +  E A EIA RSRGTPRIA RLLRRVRDFAEV     I+RE+AD ALL 
Sbjct: 203 TRSSQLLKVPIDQEGALEIARRSRGTPRIANRLLRRVRDFAEVRANGQISREVADLALLM 262

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D  G D +D + L+ +   FGGGPVG++ ++A + E RD IED++EP++IQQGF+QR
Sbjct: 263 LDVDHGGLDVMDRKLLSAVIDKFGGGPVGVDNLAAAIGEARDTIEDVLEPFLIQQGFLQR 322

Query: 313 TPRGRLLMPIAWQHLGID 330
           TPRGR+     ++HLG+D
Sbjct: 323 TPRGRVATAAVYRHLGLD 340


>gi|332978481|gb|EGK15193.1| crossover junction ATP-dependent DNA helicase RuvB [Psychrobacter
           sp. 1501(2011)]
          Length = 325

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 195/314 (62%), Positives = 243/314 (77%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           Q+D   S +RP TL E+ GQ      ++VFIEAA+ R EALDH L  GPPGLGKTTLA +
Sbjct: 12  QDDTVDSNIRPGTLAEYIGQPVVREQMEVFIEAARRRDEALDHTLIFGPPGLGKTTLANI 71

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +A+E+G N RSTSGPV+ +AGDLAA+LTNLE+ DVLFIDEIHRLS ++EEILYPAMEDFQ
Sbjct: 72  IAKEMGGNLRSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPVIEEILYPAMEDFQ 131

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           LD+M+GEGP+ARS+K++L RFTL+AATTR GLLT+PL+DRFGI  RL FY IEDL TIV 
Sbjct: 132 LDIMIGEGPAARSIKLDLPRFTLVAATTRAGLLTSPLRDRFGIVQRLEFYNIEDLTTIVS 191

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A+L  + +T E A E+A RSRGTPRIA RLLRRVRD+AEV     +T +IAD+AL  L
Sbjct: 192 RSARLMNVEMTAEGAVEVARRSRGTPRIANRLLRRVRDYAEVKSNGKVTGDIADSALDML 251

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
           A+D+ G D LD RY+ M+   F GGP G+E I+A ++E R  +ED+IEPY+IQQG++ RT
Sbjct: 252 AVDRRGLDHLDRRYIEMVHARFDGGPAGVEAIAAAMAEDRGTLEDVIEPYLIQQGYVLRT 311

Query: 314 PRGRLLMPIAWQHL 327
            RGR+L  +A   L
Sbjct: 312 ARGRVLTQMAIDQL 325


>gi|188591241|ref|YP_001795841.1| holliday junction DNA helicase ruvb [Cupriavidus taiwanensis LMG
           19424]
 gi|238692933|sp|B2AH72|RUVB_CUPTR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|170938135|emb|CAP63121.1| ATP-dependent DNA helicase, subunit B of RuvABC Holliday junction
           resolvasome [Cupriavidus taiwanensis LMG 19424]
          Length = 354

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 192/321 (59%), Positives = 245/321 (76%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           SQE+A    LRP+ L+E+ GQ +    L +F+ AA+ R EALDHVL  GPPGLGKTTLA 
Sbjct: 21  SQEEAFERALRPKLLDEYVGQEKVRGQLDIFMHAARKRREALDHVLLFGPPGLGKTTLAH 80

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++ARE+GV+ R TSGPV+ + GDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+
Sbjct: 81  IIAREMGVSLRQTSGPVLERPGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDY 140

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           Q+D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  E+L  IV
Sbjct: 141 QIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTAEELARIV 200

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R A+L    +  + A EIA R+RGTPRIA RLLRRVRD+AEV    TITRE+ADAAL  
Sbjct: 201 TRSAQLLQARIDPQGALEIARRARGTPRIANRLLRRVRDYAEVKGDGTITREMADAALAM 260

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D++GFD +D + L  +   FGGGPVG++ ++A + E RD IED++EPY+IQQG++QR
Sbjct: 261 LDVDRVGFDLMDRKLLEAVLHKFGGGPVGVDNLAAAIGEERDTIEDVLEPYLIQQGYLQR 320

Query: 313 TPRGRLLMPIAWQHLGIDIPH 333
           TPRGR+    A++H G+  P 
Sbjct: 321 TPRGRVATAAAYRHFGLASPQ 341


>gi|302384290|ref|YP_003820113.1| Holliday junction DNA helicase RuvB [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302194918|gb|ADL02490.1| Holliday junction DNA helicase RuvB [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 342

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 205/333 (61%), Positives = 253/333 (75%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M  + ++S   +  +A    LRP+TL EF GQ  A  NLK+FI+AA+ R EALDHVL  G
Sbjct: 1   MSDDRIISPEPAPGEAYDRALRPQTLSEFVGQEAAKGNLKIFIDAARGRGEALDHVLLFG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLAQ+VARELGV FR+TSGP++AKAGDLAA+LTNLE RDVLFIDEIHRL+  V
Sbjct: 61  PPGLGKTTLAQIVARELGVGFRATSGPILAKAGDLAAILTNLEPRDVLFIDEIHRLAPTV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILYPAMED  LDL++GEGPSARSV+I+L+ FTL+ ATTR GLL  PL+DRFGIP+RL 
Sbjct: 121 EEILYPAMEDHVLDLIIGEGPSARSVRIDLAPFTLVGATTRAGLLATPLRDRFGIPLRLE 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY   +L  ++   A+  G  + DE A EIA RSRGTPR+AGRLLRRVRDFAE   A  I
Sbjct: 181 FYTPAELVRVITGAARKMGAPINDEGAGEIASRSRGTPRVAGRLLRRVRDFAEAEGAAVI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
            R +A  AL RL ID+ G D  D R+L  +  N+GGGPVG++T++A ++E RDA+ED+IE
Sbjct: 241 NRIVAARALSRLEIDEAGLDANDRRFLKALIENYGGGPVGMDTLAAAIAEARDAVEDVIE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           PY++QQGFIQRTPRGR+    A+ HLG+  P +
Sbjct: 301 PYLLQQGFIQRTPRGRMACAKAYAHLGLSEPPK 333


>gi|301050786|ref|ZP_07197643.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 185-1]
 gi|300297541|gb|EFJ53926.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 185-1]
          Length = 336

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 195/334 (58%), Positives = 251/334 (75%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S   +  ED     +RP+ LEE+ GQ +  S +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IV R A+  GL ++D+ A E+A R+RGTPRIA RLLRRVRDFAEV H  
Sbjct: 181 LEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           TI+ +IA  AL  L +D  GFD +D + L  +   F  GPVG++ ++A + E R+ IED+
Sbjct: 241 TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFCGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +EPY+IQQGF+QRTPRGR+    AW H GI  P 
Sbjct: 301 LEPYLIQQGFLQRTPRGRMATVRAWNHFGITPPE 334


>gi|91793238|ref|YP_562889.1| Holliday junction DNA helicase B [Shewanella denitrificans OS217]
 gi|123060936|sp|Q12N10|RUVB_SHEDO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|91715240|gb|ABE55166.1| Holliday junction DNA helicase RuvB [Shewanella denitrificans
           OS217]
          Length = 337

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 198/333 (59%), Positives = 254/333 (76%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+   V  +D  I   +RP+ L+++TGQ +  + LK+FI+AA  R EALDH+L 
Sbjct: 1   MIEADRLIQPQVLAQDEHIDRAMRPKLLDDYTGQDDTRAQLKIFIQAAINRKEALDHMLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN +STSGPV+ KAGDLAALLTNL++ DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLAMIVANEMGVNIKSTSGPVLEKAGDLAALLTNLDEGDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+ RFGIP+R
Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGALTSPLRARFGIPLR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY ++DL TIV R AK+  LA+    A EIA RSRGTPRIA RLLRRVRD+AEV  A 
Sbjct: 181 LEFYNVKDLCTIVTRSAKVMELAIDAGGAHEIAKRSRGTPRIANRLLRRVRDYAEVKFAG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            +T ++A  AL  L +D+ GFD LD + L  I   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 EVTEDVAQQALDMLDVDQEGFDYLDRKLLLSIIDKFMGGPVGLDNLAAAIGEDRETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           +EP++IQQGFIQRTPRGR++ P A+QH  I  P
Sbjct: 301 LEPFLIQQGFIQRTPRGRIVTPRAYQHFNIITP 333


>gi|254000105|ref|YP_003052168.1| Holliday junction DNA helicase RuvB [Methylovorus sp. SIP3-4]
 gi|313202064|ref|YP_004040722.1| holliday junction DNA helicase ruvb [Methylovorus sp. MP688]
 gi|253986784|gb|ACT51641.1| Holliday junction DNA helicase RuvB [Methylovorus sp. SIP3-4]
 gi|312441380|gb|ADQ85486.1| Holliday junction DNA helicase RuvB [Methylovorus sp. MP688]
          Length = 345

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 192/319 (60%), Positives = 245/319 (76%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           +E+A    LRP+ L+E+ GQ +A   L++FI AA+ R+EALDHVL  GPPGLGKTTLA +
Sbjct: 16  EEEALERALRPKVLDEYVGQEKARGQLEIFINAARGRSEALDHVLLFGPPGLGKTTLAHI 75

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +ARE+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPAMED++
Sbjct: 76  IAREMGVNMRQTSGPVLERAGDLAALLTNLEPNDVLFIDEIHRLSPVVEEILYPAMEDYR 135

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           LD+M+GEGP+ARSV+++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  E+L  IV 
Sbjct: 136 LDIMIGEGPAARSVRLDLPPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYTSEELARIVH 195

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A L  +++ +  A EIA RSRGTPRIA RLLRRVRD+A+V     +T  IADAAL  L
Sbjct: 196 RSATLLDVSMQEAGALEIAKRSRGTPRIANRLLRRVRDYAQVKADGIVTSAIADAALQML 255

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +DK+GFD +D + L  +   FGGGPVG++ ++A + E RD IED++EPY+IQQG++ RT
Sbjct: 256 DVDKLGFDVMDRKLLLAVLEKFGGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGYLMRT 315

Query: 314 PRGRLLMPIAWQHLGIDIP 332
           PRGR+    A+QH G+  P
Sbjct: 316 PRGRIATQQAYQHFGLPAP 334


>gi|89094838|ref|ZP_01167771.1| Holliday junction DNA helicase RuvB [Oceanospirillum sp. MED92]
 gi|89080893|gb|EAR60132.1| Holliday junction DNA helicase RuvB [Oceanospirillum sp. MED92]
          Length = 337

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 190/318 (59%), Positives = 240/318 (75%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E+A    +RP++LE++ GQ      +++FI+AAK R+EALDH L  GPPGLGKTTLA ++
Sbjct: 16  EEAQDRAIRPKSLEDYVGQPVVREQMEIFIQAAKMRSEALDHTLIFGPPGLGKTTLANII 75

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A E+G   ++TSGPV+ KAGDLAALLTNLE  DVLFIDEIHRLS  VEE+LYPAMED+QL
Sbjct: 76  ANEMGSEIKTTSGPVLEKAGDLAALLTNLEPNDVLFIDEIHRLSPNVEEVLYPAMEDYQL 135

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D+M+GEGP+ARS+K+ L  FTL+ ATTR GLLT+PL+DRFGI  RL FY ++DL +IV R
Sbjct: 136 DIMIGEGPAARSIKLELPPFTLVGATTRAGLLTSPLRDRFGIVQRLEFYNVDDLTSIVSR 195

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A L+G  + D+ A E+A RSRGTPRIA RLLRR RD+AEV     I  EIAD AL  L 
Sbjct: 196 SANLSGTGIDDQGAREVAKRSRGTPRIANRLLRRARDYAEVKGDGVINNEIADKALNMLN 255

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D  GFD LD R L  +   F GGPVG+E+++A +SE RD IED++EPY+IQQGF+ RTP
Sbjct: 256 VDHHGFDHLDRRMLLTMIEKFAGGPVGVESLAAAISEERDTIEDVLEPYLIQQGFVMRTP 315

Query: 315 RGRLLMPIAWQHLGIDIP 332
           RGR++   A++H GI  P
Sbjct: 316 RGRVVTDHAYKHFGIAKP 333


>gi|119774974|ref|YP_927714.1| Holliday junction DNA helicase RuvB [Shewanella amazonensis SB2B]
 gi|166231551|sp|A1S6N8|RUVB_SHEAM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|119767474|gb|ABM00045.1| Holliday junction DNA helicase RuvB [Shewanella amazonensis SB2B]
          Length = 334

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 194/323 (60%), Positives = 247/323 (76%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           +++ QED     +RP+ L+E+TGQ +  + LKVFIEAAK R EALDH+L  GPPGLGKTT
Sbjct: 11  QDLGQEDVIDRAMRPKLLDEYTGQDDTRAQLKVFIEAAKKRGEALDHMLIYGPPGLGKTT 70

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           LA +VA E+GVN +STSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS +VEEILYPAM
Sbjct: 71  LANIVANEMGVNIKSTSGPVLEKAGDLAALLTNLEEGDVLFIDEIHRLSPVVEEILYPAM 130

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           ED+QLD+M+GEGP+ARS+K++L  FTL+ ATTR G LT+PL+ RFGIP+RL FY + DL 
Sbjct: 131 EDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRARFGIPLRLEFYNVRDLS 190

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
           +IV R AK+  + + +  A EIA RSRGTPRIA RLLRRVRDFAEV H   I+R +A +A
Sbjct: 191 SIVARSAKVMDVPMDEGGAEEIARRSRGTPRIANRLLRRVRDFAEVKHDGAISRAVAQSA 250

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           L  L +D  GFD +D + L  I   F GGPVG++ ++A + E R+ IED++EP++IQQGF
Sbjct: 251 LDLLDVDSEGFDYMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETIEDVLEPFLIQQGF 310

Query: 310 IQRTPRGRLLMPIAWQHLGIDIP 332
           +QRTPRGR+    A+ H  +  P
Sbjct: 311 VQRTPRGRIATARAYSHFDLIKP 333


>gi|82703832|ref|YP_413398.1| Holliday junction DNA helicase B [Nitrosospira multiformis ATCC
           25196]
 gi|97190171|sp|Q2Y5G5|RUVB_NITMU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|82411897|gb|ABB76006.1| Holliday junction DNA helicase subunit RuvB [Nitrosospira
           multiformis ATCC 25196]
          Length = 347

 Score =  396 bits (1017), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 192/322 (59%), Positives = 247/322 (76%), Gaps = 1/322 (0%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           ++ +ED + +L RP+ L E+ GQ +    L++FIEAA+ R EALDHVL  GPPGLGKTTL
Sbjct: 14  SLKEEDLERAL-RPKHLAEYIGQEKIRGQLQIFIEAARRRREALDHVLLFGPPGLGKTTL 72

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           A +VA+E+GV  R TSGPV+ + GDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+E
Sbjct: 73  AHIVAKEMGVGLRQTSGPVLERPGDLAALLTNLEPNDVLFIDEIHRLSPVVEEILYPALE 132

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           D+QLD+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY +E+L  
Sbjct: 133 DYQLDIMIGEGPAARSVKLDLPPFTLVGATTRAGMLTNPLRDRFGIISRLEFYSVEELTQ 192

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           IV R A L G  ++ + A EIA RSRGTPR+  RLLRRVRDFAEV     I R++ADAAL
Sbjct: 193 IVMRSAALLGADISPDGATEIARRSRGTPRVVNRLLRRVRDFAEVKAEGRINRQVADAAL 252

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
           L L +D +G D +D + L  +   FGGGPVG++ ++A +SE R  IED++EPY+IQQG++
Sbjct: 253 LMLDVDAIGLDVMDRKLLLTVMEKFGGGPVGVDNLAAAISEERGTIEDVLEPYLIQQGYM 312

Query: 311 QRTPRGRLLMPIAWQHLGIDIP 332
           +RTPRGR+   IA+QH G+ +P
Sbjct: 313 KRTPRGRMATSIAYQHFGLALP 334


>gi|311279239|ref|YP_003941470.1| Holliday junction DNA helicase RuvB [Enterobacter cloacae SCF1]
 gi|308748434|gb|ADO48186.1| Holliday junction DNA helicase RuvB [Enterobacter cloacae SCF1]
          Length = 336

 Score =  396 bits (1017), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 197/335 (58%), Positives = 254/335 (75%), Gaps = 3/335 (0%)

Query: 1   MMDREGLLS--RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M++ + L+S   + ++E AD ++ RP+ L E+ GQ +  S +++FI+AAK R +ALDH+L
Sbjct: 1   MIEADRLISAGSSTAEEVADRAI-RPKLLAEYVGQPQVRSQMEIFIQAAKLRGDALDHLL 59

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS
Sbjct: 60  IFGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLS 119

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  
Sbjct: 120 PVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQ 179

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           RL FY++ DL+ IV R A+  GL +++E A E+A RSRGTPRIA RLLRRVRDFAEV H 
Sbjct: 180 RLEFYQVPDLQHIVGRSARYMGLEMSEEGALEVARRSRGTPRIANRLLRRVRDFAEVRHD 239

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
            TI+  IA  AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED
Sbjct: 240 GTISAHIAAEALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIED 299

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           ++EPY+IQQGF+QRTPRGR+    AW H GI  P 
Sbjct: 300 VLEPYLIQQGFLQRTPRGRMATVRAWNHFGITPPQ 334


>gi|83647601|ref|YP_436036.1| Holliday junction DNA helicase RuvB [Hahella chejuensis KCTC 2396]
 gi|97190097|sp|Q2SCL3|RUVB_HAHCH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|83635644|gb|ABC31611.1| Holliday junction DNA helicase RuvB [Hahella chejuensis KCTC 2396]
          Length = 334

 Score =  396 bits (1017), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 191/333 (57%), Positives = 250/333 (75%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + ++S N + QED+    +RP+ LE++ GQ +    +++FI AA+ R EALDH L 
Sbjct: 1   MIEADRIISPNATLQEDSQDRAIRPKRLEDYVGQPQVREQMEIFINAARGRQEALDHTLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A E+ V+ ++TSGPV+ KAGDLAALLTNLE +DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIIANEMDVSIKTTSGPVLEKAGDLAALLTNLEPKDVLFIDEIHRLSA 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ ATTR GLLT+PL+DRFGI  R
Sbjct: 121 AVEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGLLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY +EDL+ IV R A L G+++ D  A EIA RSRGTPRIA RLLRRVRD+AEV    
Sbjct: 181 LEFYSVEDLRHIVARSASLLGVSIDDGGAHEIARRSRGTPRIANRLLRRVRDYAEVKADG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT E+AD AL  L +D  GFD +D R L  +   F GGPVG+E+++A + E +  IED+
Sbjct: 241 AITNEVADKALNMLNVDLHGFDHMDRRLLLAVMEKFDGGPVGVESLAAAIGEEKGTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           +EPY+IQQGF+ RTPRGR+    A+ H G+ +P
Sbjct: 301 VEPYLIQQGFLMRTPRGRVATQAAYNHFGLTMP 333


>gi|15604251|ref|NP_220767.1| Holliday junction DNA helicase RuvB [Rickettsia prowazekii str.
           Madrid E]
 gi|6226116|sp|Q9ZDE5|RUVB_RICPR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|3860943|emb|CAA14843.1| HOLLIDAY JUNCTION DNA HELICASE RUVB (ruvB) [Rickettsia prowazekii]
 gi|292571995|gb|ADE29910.1| Holliday junction DNA helicase RuvB [Rickettsia prowazekii Rp22]
          Length = 342

 Score =  396 bits (1017), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 192/329 (58%), Positives = 249/329 (75%), Gaps = 1/329 (0%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            +LS   S+ D ++ + RP  L+EF GQ +   NL VFI+AAK+R E LDH LF GPPGL
Sbjct: 3   NILSPEKSEHDQELPI-RPSYLKEFVGQQQIKENLLVFIKAAKSRNEHLDHTLFYGPPGL 61

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLA++++ E+G NF+ST+GP I KA DLA++LTNLE  DVLFIDEIHRL+ +VEE+L
Sbjct: 62  GKTTLAKIISNEIGGNFKSTAGPAIIKAADLASILTNLEKNDVLFIDEIHRLNTLVEEVL 121

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           Y AMEDF+LD+++GEG +AR VKI L +FTLI ATTR GL++NPL+DRFGIP+RLNFY  
Sbjct: 122 YSAMEDFELDIIIGEGSAARPVKITLPKFTLIGATTRFGLISNPLRDRFGIPMRLNFYNT 181

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           E+LK ++ R +KL  + +TD  + EIA RSRGTPRIA RLLRR+RDFA V     I +EI
Sbjct: 182 EELKQVLNRASKLLDIDLTDSGSEEIAKRSRGTPRIALRLLRRIRDFAVVDGKSRIDKEI 241

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
            D  L RL +D +G D  D RYL  IA N+ GGPVGIETI+A LSE RD +E+ IEPY+I
Sbjct: 242 CDFGLKRLTVDSIGLDSNDYRYLKFIADNYHGGPVGIETIAAALSEQRDELEETIEPYLI 301

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           + G ++RTPRGR++   A++HL + IP++
Sbjct: 302 KIGLVKRTPRGRVITIAAFEHLKMPIPNK 330


>gi|51473577|ref|YP_067334.1| Holliday junction DNA helicase B [Rickettsia typhi str. Wilmington]
 gi|68715433|sp|Q68WZ0|RUVB_RICTY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|51459889|gb|AAU03852.1| Holliday junction DNA helicase RuvB [Rickettsia typhi str.
           Wilmington]
          Length = 342

 Score =  396 bits (1017), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 194/329 (58%), Positives = 249/329 (75%), Gaps = 1/329 (0%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            +LS   S+ D ++ + RP  L+EF GQ +   NL VFI+AAK+R E LDH LF GPPGL
Sbjct: 3   NILSPEKSENDQELPI-RPSYLQEFVGQQQIKENLLVFIKAAKSRNEHLDHTLFYGPPGL 61

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLA++++ E+G NF+ST+GP I KA DLAA+LTNLE  DVLFIDEIHRL+ +VEEIL
Sbjct: 62  GKTTLAKIISNEIGGNFKSTAGPAIIKAADLAAILTNLEKNDVLFIDEIHRLNTLVEEIL 121

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           Y AMEDF+LD+++GEG +ARSVKI L +FTLI ATTR G+L+N L+DRFGIP+RLNFY  
Sbjct: 122 YSAMEDFELDIIIGEGSAARSVKITLPKFTLIGATTRFGMLSNSLRDRFGIPMRLNFYNT 181

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           E+LK ++ R +KL  + +TD  + EIA RSRGTPRIA RLLRR+RDFA V     I +EI
Sbjct: 182 EELKQVLNRASKLLDIDLTDSGSEEIAKRSRGTPRIALRLLRRIRDFAVVDGKLRIDKEI 241

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
            D  L RL +D +G D  D RYL  IA N+ GGPVGIETI+A LSE RD +E+ IEPY+I
Sbjct: 242 CDFGLKRLTVDSIGLDSNDYRYLKFIADNYHGGPVGIETIAAALSEQRDELEETIEPYLI 301

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           + G ++RTPRGR++   A++HL + IP++
Sbjct: 302 KIGLVKRTPRGRVITIAAFEHLKMPIPNK 330


>gi|91785165|ref|YP_560371.1| Holliday junction DNA helicase B [Burkholderia xenovorans LB400]
 gi|296157352|ref|ZP_06840188.1| Holliday junction DNA helicase RuvB [Burkholderia sp. Ch1-1]
 gi|123062566|sp|Q13UC0|RUVB_BURXL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|91689119|gb|ABE32319.1| Holliday junction DNA helicase RuvB [Burkholderia xenovorans LB400]
 gi|295892688|gb|EFG72470.1| Holliday junction DNA helicase RuvB [Burkholderia sp. Ch1-1]
          Length = 355

 Score =  395 bits (1016), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 194/319 (60%), Positives = 241/319 (75%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
            E+A    LRPR LEE+ GQ +    L++FIEAAK R+E+LDHVL  GPPGLGKTTLA +
Sbjct: 21  NEEAFERALRPRQLEEYVGQEKVRGQLEIFIEAAKRRSESLDHVLLFGPPGLGKTTLAHI 80

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +ARE+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+Q
Sbjct: 81  IAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDYQ 140

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           +D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  E L  IV 
Sbjct: 141 IDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYNAEQLARIVT 200

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A L    +  + A EIA R+RGTPRIA RLLRRVRDFAEV     IT ++ADAAL  L
Sbjct: 201 RSASLLHAQIHPDGAFEIAKRARGTPRIANRLLRRVRDFAEVKADGNITAQVADAALKML 260

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D +GFD +D + L  I   F GGPVG++ ++A + E RD IED++EPY+IQQGF+QRT
Sbjct: 261 DVDAVGFDLMDRKLLEAILHKFDGGPVGVDNLAAAIGEERDTIEDVLEPYLIQQGFLQRT 320

Query: 314 PRGRLLMPIAWQHLGIDIP 332
           PRGR+   + ++H G+  P
Sbjct: 321 PRGRVATLLTYRHFGLAAP 339


>gi|197119681|ref|YP_002140108.1| Holliday junction DNA helicase RuvB [Geobacter bemidjiensis Bem]
 gi|226698777|sp|B5EAH3|RUVB_GEOBB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|197089041|gb|ACH40312.1| Holliday junction DNA helicase RuvB [Geobacter bemidjiensis Bem]
          Length = 337

 Score =  395 bits (1016), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 194/322 (60%), Positives = 248/322 (77%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L+S + S++D   + LRPR L ++ GQ +A  NL +FI+AA+ R+EALDHVL  GPPGLG
Sbjct: 4   LISADKSEDDLLEASLRPRALSDYVGQEKAKGNLGLFIDAARGRSEALDHVLLYGPPGLG 63

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTTLA ++A E+GVN +STSGPVI + GDLAA+LTNLE  DVLFIDEIHRLS +VEEILY
Sbjct: 64  KTTLANIIACEMGVNIKSTSGPVIERPGDLAAILTNLEAHDVLFIDEIHRLSHVVEEILY 123

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           PAMEDFQLD+++G+GPSAR++K++L +FTL+ ATTR GLL++PL+DRFG+  RL FY  E
Sbjct: 124 PAMEDFQLDIIIGQGPSARTIKLDLPKFTLVGATTRAGLLSSPLRDRFGVISRLEFYTHE 183

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +L  I+ R A++ G+A+  E A E+A RSRGTPRIA RLLRRVRDFA+V     ITRE+A
Sbjct: 184 ELAFIITRSARIFGMAIAPEGAMELARRSRGTPRIANRLLRRVRDFAQVRADGVITREVA 243

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           D AL  L ID MGFD +D   L  I   FGGGPVG++TI+A +SE  D IED+ EP++IQ
Sbjct: 244 DQALALLEIDDMGFDMMDRAILLTIIDKFGGGPVGLDTIAAAISEESDTIEDVYEPFLIQ 303

Query: 307 QGFIQRTPRGRLLMPIAWQHLG 328
            GF+ RTPRGR+    A++H G
Sbjct: 304 NGFLNRTPRGRVATAAAYRHFG 325


>gi|294141121|ref|YP_003557099.1| Holliday junction DNA helicase RuvB [Shewanella violacea DSS12]
 gi|293327590|dbj|BAJ02321.1| Holliday junction DNA helicase RuvB [Shewanella violacea DSS12]
          Length = 339

 Score =  395 bits (1016), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 193/312 (61%), Positives = 241/312 (77%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L+E+TGQ    + LKVFI+AA+ R EALDH+L  GPPGLGKTTLA +VA E+GVN
Sbjct: 26  MRPKLLDEYTGQDATRAQLKVFIQAAQNRGEALDHMLIYGPPGLGKTTLALIVANEMGVN 85

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            +STSGPV+ KAGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPAMED+QLD+M+GEG
Sbjct: 86  IKSTSGPVLEKAGDLAALLTNLEPGDVLFIDEIHRLSPVVEEILYPAMEDYQLDIMIGEG 145

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+K++L  FTLI ATTR G LT+PL+ RFGIP+RL FY ++DL TIV R AK+  L
Sbjct: 146 PAARSIKLDLPPFTLIGATTRAGALTSPLRARFGIPLRLEFYNVKDLSTIVTRSAKVLEL 205

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + DE + E+A RSRGTPRIA RLLRRVRD+AEV H   I + +AD AL  L +D  GFD
Sbjct: 206 PIDDEGSLEVARRSRGTPRIANRLLRRVRDYAEVKHDGEINKRVADLALEMLDVDVEGFD 265

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + +  I   F GGPVG++ ++A + E R+ IED++EP++IQQGFIQRTPRGR+   
Sbjct: 266 YMDRKLMLAIIDKFMGGPVGLDNLAAAIGEERETIEDVLEPFLIQQGFIQRTPRGRIATQ 325

Query: 322 IAWQHLGIDIPH 333
            A+QH  I  P 
Sbjct: 326 RAYQHFNIIQPE 337


>gi|217973220|ref|YP_002357971.1| Holliday junction DNA helicase RuvB [Shewanella baltica OS223]
 gi|304408863|ref|ZP_07390484.1| Holliday junction DNA helicase RuvB [Shewanella baltica OS183]
 gi|307302866|ref|ZP_07582621.1| Holliday junction DNA helicase RuvB [Shewanella baltica BA175]
 gi|254767439|sp|B8EA75|RUVB_SHEB2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|217498355|gb|ACK46548.1| Holliday junction DNA helicase RuvB [Shewanella baltica OS223]
 gi|304352684|gb|EFM17081.1| Holliday junction DNA helicase RuvB [Shewanella baltica OS183]
 gi|306913226|gb|EFN43648.1| Holliday junction DNA helicase RuvB [Shewanella baltica BA175]
          Length = 334

 Score =  395 bits (1016), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 196/334 (58%), Positives = 252/334 (75%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+   +  +D  I   +RP+ L+E+TGQ +  + LKVFI+AAK R EALDH+L 
Sbjct: 1   MIEADRLIQPQIQAQDESIDRAMRPKMLDEYTGQDDTRAQLKVFIQAAKNRNEALDHMLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN +STSGPV+ KAGDLAALLTNLE  DVLFIDEIHRLS 
Sbjct: 61  YGPPGLGKTTLAMIVANEMGVNIKSTSGPVLEKAGDLAALLTNLESGDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ ATTR G LT+PL+ RFGIP+R
Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGALTSPLRARFGIPLR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY I+DL TIV R A++  L +  E A EIA RSRGTPRIA RLLRRVRD+A+V H  
Sbjct: 181 LEFYNIKDLSTIVTRSAQVMELDIDAEGAFEIARRSRGTPRIANRLLRRVRDYAQVKHDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            +T+ +A+ AL  L +D  GFD +D + L  I   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 AVTKFVAEHALDLLDVDSEGFDYMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +EP++IQQGFIQRTPRGR+    A+QH  +  P 
Sbjct: 301 LEPFLIQQGFIQRTPRGRIATARAYQHFELIKPE 334


>gi|261343862|ref|ZP_05971507.1| holliday junction DNA helicase RuvB [Providencia rustigianii DSM
           4541]
 gi|282568249|gb|EFB73784.1| holliday junction DNA helicase RuvB [Providencia rustigianii DSM
           4541]
          Length = 336

 Score =  395 bits (1015), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 195/331 (58%), Positives = 252/331 (76%), Gaps = 2/331 (0%)

Query: 1   MMDREGLLSRNV--SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M++ + L++  V  S+E+A    +RP+ L E+ GQ +    +++FI+AAK R +ALDH+L
Sbjct: 1   MIEADRLITAEVLHSEEEAIDRAIRPKLLAEYIGQPQVKDQMEIFIQAAKMRGDALDHLL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA +VA ELGVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS
Sbjct: 61  IFGPPGLGKTTLAGIVANELGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLS 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            +VEEILYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  
Sbjct: 121 PVVEEILYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQ 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           RL FY+++DL+ IV+R A+  GL +T+E A ++AMRSRGTPRI  RLLRRVRDFA+V   
Sbjct: 181 RLEFYQVDDLQHIVKRSAQYMGLEITEEGALQVAMRSRGTPRITNRLLRRVRDFAQVKGD 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
            TI   +A+ AL  L +D  GFD LD + L  I   F GGPVG++ ++A + E R+ IED
Sbjct: 241 GTIDEAMANKALDMLNVDAAGFDYLDRKLLVAIIDKFMGGPVGVDNLAAAIGEERETIED 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           ++EPY+IQQGFIQRTPRGR+    A+ H G+
Sbjct: 301 VLEPYLIQQGFIQRTPRGRMATAHAYSHFGL 331


>gi|307730948|ref|YP_003908172.1| Holliday junction DNA helicase RuvB [Burkholderia sp. CCGE1003]
 gi|307585483|gb|ADN58881.1| Holliday junction DNA helicase RuvB [Burkholderia sp. CCGE1003]
          Length = 354

 Score =  395 bits (1015), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 193/319 (60%), Positives = 242/319 (75%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
            E+A    LRPR LEE+ GQ +    L++FIEAA+ R+E+LDHVL  GPPGLGKTTLA +
Sbjct: 21  NEEAFERALRPRQLEEYVGQEKVRGQLEIFIEAARRRSESLDHVLLFGPPGLGKTTLAHI 80

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +ARE+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+Q
Sbjct: 81  IAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDYQ 140

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           +D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  E+L  IV 
Sbjct: 141 IDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYNAEELARIVT 200

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A L    +  + A EIA R+RGTPRIA RLLRRVRDFAEV     IT ++ADAAL  L
Sbjct: 201 RSASLLNAQIHPDGAFEIARRARGTPRIANRLLRRVRDFAEVKADGNITAQVADAALSML 260

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D +GFD +D + L  I   F GGPVG++ ++A + E RD IED++EPY+IQQGF+QRT
Sbjct: 261 DVDPVGFDLMDRKLLEAILHKFDGGPVGVDNLAAAIGEERDTIEDVLEPYLIQQGFLQRT 320

Query: 314 PRGRLLMPIAWQHLGIDIP 332
           PRGR+   + ++H G+  P
Sbjct: 321 PRGRVATLLTYRHFGLAAP 339


>gi|153000823|ref|YP_001366504.1| Holliday junction DNA helicase RuvB [Shewanella baltica OS185]
 gi|160875531|ref|YP_001554847.1| Holliday junction DNA helicase RuvB [Shewanella baltica OS195]
 gi|166231553|sp|A6WNQ2|RUVB_SHEB8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|189046048|sp|A9L3H7|RUVB_SHEB9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|151365441|gb|ABS08441.1| Holliday junction DNA helicase RuvB [Shewanella baltica OS185]
 gi|160861053|gb|ABX49587.1| Holliday junction DNA helicase RuvB [Shewanella baltica OS195]
 gi|315267719|gb|ADT94572.1| Holliday junction DNA helicase RuvB [Shewanella baltica OS678]
          Length = 334

 Score =  395 bits (1015), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 196/334 (58%), Positives = 252/334 (75%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+   +  +D  I   +RP+ L+E+TGQ +  + LKVFI+AAK R EALDH+L 
Sbjct: 1   MIEADRLIQPQIQAQDESIDRAMRPKMLDEYTGQDDTRAQLKVFIQAAKNRNEALDHMLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN +STSGPV+ KAGDLAALLTNLE  DVLFIDEIHRLS 
Sbjct: 61  YGPPGLGKTTLAMIVANEMGVNIKSTSGPVLEKAGDLAALLTNLESGDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ ATTR G LT+PL+ RFGIP+R
Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGALTSPLRARFGIPLR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY I+DL TIV R A++  L +  E A EIA RSRGTPRIA RLLRRVRD+A+V H  
Sbjct: 181 LEFYNIKDLSTIVTRSAQVMELDIDAEGAFEIARRSRGTPRIANRLLRRVRDYAQVKHDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            +T+ +A+ AL  L +D  GFD +D + L  I   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 AVTKFVAEHALDLLDVDSEGFDYMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +EP++IQQGFIQRTPRGR+    A+QH  +  P 
Sbjct: 301 LEPFLIQQGFIQRTPRGRIATVRAYQHFELIKPE 334


>gi|291280185|ref|YP_003497020.1| Holliday junction DNA helicase RuvB [Deferribacter desulfuricans
           SSM1]
 gi|290754887|dbj|BAI81264.1| Holliday junction DNA helicase RuvB [Deferribacter desulfuricans
           SSM1]
          Length = 343

 Score =  395 bits (1015), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 190/316 (60%), Positives = 244/316 (77%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           +ED     +RP + +E+ GQ +   NLK+F+EAAK R E LDH L  GPPGLGKTTLA +
Sbjct: 11  EEDIQGIHIRPNSFDEYVGQKKIVENLKIFVEAAKKRGEPLDHCLIYGPPGLGKTTLANI 70

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +A ELGV+ +STSGP I K GDLAA+LTNL + DVLFIDEIHRL   VEEILYPAMEDF+
Sbjct: 71  IANELGVSIKSTSGPTIEKPGDLAAILTNLSEGDVLFIDEIHRLHTSVEEILYPAMEDFK 130

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           LD+++G+GP+AR++KI+L +FTLI ATTR GLLT+PL+DRFG+  RL+FY++++LK IV 
Sbjct: 131 LDIIIGQGPAARTIKIDLPKFTLIGATTRAGLLTSPLRDRFGMIFRLDFYDVDELKQIVL 190

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           RGAK+ G+ + D AA  IA R RGTPRIA R+LRRVRDFAEV +   +T+EIAD  L RL
Sbjct: 191 RGAKVLGVEIDDSAAMVIASRCRGTPRIAHRILRRVRDFAEVMNDGVVTKEIADFGLNRL 250

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            ID  G D  D  +L  I   + GGPVGIET+SA LSE +D +ED+IEPY+I +GFI++T
Sbjct: 251 EIDSAGLDINDRNFLLAIIEKYNGGPVGIETLSATLSEEKDTLEDVIEPYLIYKGFIKKT 310

Query: 314 PRGRLLMPIAWQHLGI 329
           PRGR++ P+A++HL I
Sbjct: 311 PRGRVVTPLAYEHLNI 326


>gi|294338684|emb|CAZ87015.1| Holliday junction ATP-dependent DNA helicase ruvB [Thiomonas sp.
           3As]
          Length = 352

 Score =  395 bits (1015), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 192/313 (61%), Positives = 239/313 (76%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L+++ GQV     L +FI AA+ R EALDHVL  GPPGLGKTTLA +VARE+GVN
Sbjct: 32  LRPQQLDDYVGQVRVREQLDIFIGAARKREEALDHVLLFGPPGLGKTTLAHIVAREMGVN 91

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            RSTSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+Q+D+++GEG
Sbjct: 92  LRSTSGPVLERAGDLAALLTNLERNDVLFIDEIHRLSPVVEEILYPALEDYQIDILIGEG 151

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P ARSVKI+L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  E+L  IV R AKL G 
Sbjct: 152 PGARSVKIDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTAEELTRIVLRSAKLLGA 211

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  + A EIA R+RGTPRIA RLLRRVRD+A++  A  I+ E+ADAAL  L +D +GFD
Sbjct: 212 VIDPDGAAEIARRARGTPRIANRLLRRVRDYADMKAAGRISAEVADAALRMLDVDPLGFD 271

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   F GGPVG++ ++A + E RD IED+IEPY+IQQG++QRTPRGR+   
Sbjct: 272 VMDRKLLEAVVHRFDGGPVGLDNLAAAIGEERDTIEDVIEPYLIQQGYLQRTPRGRIATA 331

Query: 322 IAWQHLGIDIPHR 334
             + HLG+  P R
Sbjct: 332 ATYAHLGLAAPQR 344


>gi|323527311|ref|YP_004229464.1| Holliday junction DNA helicase RuvB [Burkholderia sp. CCGE1001]
 gi|323384313|gb|ADX56404.1| Holliday junction DNA helicase RuvB [Burkholderia sp. CCGE1001]
          Length = 392

 Score =  395 bits (1015), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 193/319 (60%), Positives = 242/319 (75%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
            E+A    LRPR LEE+ GQ +    L++FIEAAK R+E+LDHVL  GPPGLGKTTLA +
Sbjct: 59  NEEAFERALRPRQLEEYVGQEKVRGQLEIFIEAAKRRSESLDHVLLFGPPGLGKTTLAHI 118

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +ARE+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+Q
Sbjct: 119 IAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDYQ 178

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           +D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  E+L  IV 
Sbjct: 179 IDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYNAEELARIVT 238

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A L    +  + A EIA R+RGTPRIA RLLRRVRD+AEV     IT ++ADAAL  L
Sbjct: 239 RSASLLNAQIHPDGAFEIARRARGTPRIANRLLRRVRDYAEVKADGNITAQVADAALRML 298

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D +GFD +D + L  I   F GGPVG++ ++A + E RD IED++EPY+IQQGF+QRT
Sbjct: 299 DVDAVGFDLMDRKLLEAILHKFDGGPVGVDNLAAAIGEERDTIEDVLEPYLIQQGFLQRT 358

Query: 314 PRGRLLMPIAWQHLGIDIP 332
           PRGR+   + ++H G+  P
Sbjct: 359 PRGRVATLLTYRHFGLAAP 377


>gi|56477679|ref|YP_159268.1| Holliday junction DNA helicase RuvB [Aromatoleum aromaticum EbN1]
 gi|81821098|sp|Q5P2U7|RUVB_AZOSE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|56313722|emb|CAI08367.1| Holliday junction DNA helicase [Aromatoleum aromaticum EbN1]
          Length = 353

 Score =  395 bits (1015), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 194/321 (60%), Positives = 239/321 (74%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           QED     LRP+ L E+ GQ +    L++FI+AAK R EALDHVL  GPPGLGKTTLA +
Sbjct: 21  QEDVVERALRPKRLAEYVGQAKIREQLEIFIQAAKNRHEALDHVLLFGPPGLGKTTLAHI 80

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           VA E+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+EDFQ
Sbjct: 81  VAAEMGVNLRQTSGPVLERAGDLAALLTNLEPHDVLFIDEIHRLSPVVEEILYPALEDFQ 140

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           +D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY   +L  IV 
Sbjct: 141 IDIMIGEGPAARSVKLDLPPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTPHELAYIVG 200

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A L  +A+ D  A EIA R+RGTPRIA RLLRRVRD+A+V     IT  +ADAALL L
Sbjct: 201 RSAGLLDVAIDDAGAVEIARRARGTPRIANRLLRRVRDYAQVKADGDITAPVADAALLML 260

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D +G D +D + L  +   FGGGPVG++ ++A + E  D IED++EPY+IQQG++QRT
Sbjct: 261 DVDHLGLDLMDRKLLGAMLEKFGGGPVGLDNLAAAIGESSDTIEDVLEPYLIQQGYLQRT 320

Query: 314 PRGRLLMPIAWQHLGIDIPHR 334
           PRGR+     WQH G+  P R
Sbjct: 321 PRGRIASASIWQHFGLAFPRR 341


>gi|16760844|ref|NP_456461.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|16765236|ref|NP_460851.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|29141464|ref|NP_804806.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|56413187|ref|YP_150262.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|161613552|ref|YP_001587517.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167994195|ref|ZP_02575287.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168238524|ref|ZP_02663582.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168259833|ref|ZP_02681806.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|194735485|ref|YP_002114929.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197247607|ref|YP_002146129.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197262734|ref|ZP_03162808.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197362113|ref|YP_002141750.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|198242097|ref|YP_002215192.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|200390795|ref|ZP_03217406.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|213163230|ref|ZP_03348940.1| Holliday junction DNA helicase B [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213426406|ref|ZP_03359156.1| Holliday junction DNA helicase B [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213649640|ref|ZP_03379693.1| Holliday junction DNA helicase B [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|54039578|sp|P66756|RUVB_SALTI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|54042206|sp|P66755|RUVB_SALTY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|81821475|sp|Q5PIA7|RUVB_SALPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|189046046|sp|A9MUX4|RUVB_SALPB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|226698783|sp|B5F3J7|RUVB_SALA4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|226698784|sp|B5FSN8|RUVB_SALDC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|238689768|sp|B4TYR7|RUVB_SALSV RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|238690746|sp|B5BH61|RUVB_SALPK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|25299833|pir||AB0743 Holliday junction DNA helicase [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16420430|gb|AAL20810.1| Holliday junction helicase, subunit B [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|16503141|emb|CAD05645.1| Holliday junction DNA helicase [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29137091|gb|AAO68655.1| Holliday junction DNA helicase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56127444|gb|AAV76950.1| Holliday junction DNA helicase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|161362916|gb|ABX66684.1| hypothetical protein SPAB_01272 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194710987|gb|ACF90208.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197093590|emb|CAR59053.1| Holliday junction DNA helicase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197211310|gb|ACH48707.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197240989|gb|EDY23609.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197288639|gb|EDY28014.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|197936613|gb|ACH73946.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199603240|gb|EDZ01786.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205327888|gb|EDZ14652.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205350900|gb|EDZ37531.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|267993876|gb|ACY88761.1| Holliday junction DNA helicase B [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|312912888|dbj|BAJ36862.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321224537|gb|EFX49600.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|323130178|gb|ADX17608.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|326622941|gb|EGE29286.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
 gi|326627452|gb|EGE33795.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
 gi|332988788|gb|AEF07771.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 336

 Score =  395 bits (1014), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 195/333 (58%), Positives = 250/333 (75%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S   +  ED     +RP+ L E+ GQ +  S +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRLISAGATIAEDVADRAIRPKLLAEYVGQPQVRSQMEIFIQAAKRRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IV R A+  GL ++D+ A E+A R+RGTPRIA RLLRRVRDFAEV H  
Sbjct: 181 LEFYQVPDLQHIVGRSARHMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I+ EIA  AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 AISAEIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           +EPY+IQQGF+QRTPRGR+    AW H GI  P
Sbjct: 301 LEPYLIQQGFLQRTPRGRMATVRAWNHFGITPP 333


>gi|62180472|ref|YP_216889.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|167552472|ref|ZP_02346225.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|168234045|ref|ZP_02659103.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168241522|ref|ZP_02666454.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168462575|ref|ZP_02696506.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168820717|ref|ZP_02832717.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194443149|ref|YP_002041159.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194451535|ref|YP_002045947.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194468616|ref|ZP_03074600.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|224583601|ref|YP_002637399.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|238912046|ref|ZP_04655883.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|81309669|sp|Q57NA3|RUVB_SALCH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|238693526|sp|B4SVE4|RUVB_SALNS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|238693636|sp|B4T7Z2|RUVB_SALHS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|254767438|sp|C0Q2F5|RUVB_SALPC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|62128105|gb|AAX65808.1| Holliday junction helicase, subunit B [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|194401812|gb|ACF62034.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194409839|gb|ACF70058.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194454980|gb|EDX43819.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|195634281|gb|EDX52633.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|205322862|gb|EDZ10701.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205331956|gb|EDZ18720.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205339368|gb|EDZ26132.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205342660|gb|EDZ29424.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|224468128|gb|ACN45958.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|320085489|emb|CBY95270.1| Holliday junction ATP-dependent DNA helicase ruvB [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
 gi|322714947|gb|EFZ06518.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 336

 Score =  395 bits (1014), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 195/333 (58%), Positives = 250/333 (75%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S   +  ED     +RP+ L E+ GQ +  S +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRLISAGATIAEDVADRAIRPKLLAEYVGQPQVRSQMEIFIQAAKLRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IV R A+  GL ++D+ A E+A R+RGTPRIA RLLRRVRDFAEV H  
Sbjct: 181 LEFYQVPDLQHIVGRSARHMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I+ EIA  AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 AISAEIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           +EPY+IQQGF+QRTPRGR+    AW H GI  P
Sbjct: 301 LEPYLIQQGFLQRTPRGRMATVRAWNHFGITPP 333


>gi|157375171|ref|YP_001473771.1| Holliday junction DNA helicase B [Shewanella sediminis HAW-EB3]
 gi|189046051|sp|A8FUX0|RUVB_SHESH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|157317545|gb|ABV36643.1| Holliday junction DNA helicase RuvB [Shewanella sediminis HAW-EB3]
          Length = 338

 Score =  395 bits (1014), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 193/313 (61%), Positives = 241/313 (76%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L+E+TGQ +  + LK+FI+AA+ R EALDH+L  GPPGLGKTTLA +VA E+GVN
Sbjct: 26  MRPKLLDEYTGQDDTRAQLKIFIKAAQNRGEALDHMLIYGPPGLGKTTLAMIVANEMGVN 85

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            +STSGPV+ KAGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPAMED+QLD+M+GEG
Sbjct: 86  IKSTSGPVLEKAGDLAALLTNLEPGDVLFIDEIHRLSSVVEEILYPAMEDYQLDIMIGEG 145

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+K++L  FTLI ATTR G LT+PL+ RFGIP+RL FY  +DL +IV R A +  L
Sbjct: 146 PAARSIKLDLPPFTLIGATTRAGALTSPLRARFGIPLRLEFYNTKDLSSIVSRSANVLEL 205

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + DE A E+A RSRGTPRIA RLLRRVRDFAEV H   I + +AD AL  L ID  GFD
Sbjct: 206 PIDDEGAIELAKRSRGTPRIANRLLRRVRDFAEVKHDGEINKAVADLALDMLDIDSEGFD 265

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  I   F GGPVG++ ++A + E R+ IED++EP++IQQGFIQRTPRGR+   
Sbjct: 266 YMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETIEDVLEPFLIQQGFIQRTPRGRIATD 325

Query: 322 IAWQHLGIDIPHR 334
            A++H  I  P +
Sbjct: 326 RAYRHFDIIQPEK 338


>gi|161502990|ref|YP_001570102.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|189046045|sp|A9MND7|RUVB_SALAR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|160864337|gb|ABX20960.1| hypothetical protein SARI_01052 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 336

 Score =  395 bits (1014), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 193/322 (59%), Positives = 247/322 (76%), Gaps = 1/322 (0%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
            +++E AD ++ RP+ L E+ GQ +  S +++FI+AAK R +ALDH+L  GPPGLGKTTL
Sbjct: 13  TIAEEVADRAI-RPKLLAEYVGQPQVRSQMEIFIQAAKLRGDALDHLLIFGPPGLGKTTL 71

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           A +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS +VEE+LYPAME
Sbjct: 72  ANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAME 131

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           D+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  RL FY++ DL+ 
Sbjct: 132 DYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQH 191

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           IV R A+  GL ++D+ A E+A R+RGTPRIA RLLRRVRDFAEV H   I+ EIA  AL
Sbjct: 192 IVGRSARHMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGAISAEIAAQAL 251

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
             L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED++EPY+IQQGF+
Sbjct: 252 DMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFL 311

Query: 311 QRTPRGRLLMPIAWQHLGIDIP 332
           QRTPRGR+    AW H GI  P
Sbjct: 312 QRTPRGRMATVRAWNHFGITPP 333


>gi|197334291|ref|YP_002155715.1| holliday junction DNA helicase RuvB [Vibrio fischeri MJ11]
 gi|226698788|sp|B5FCQ2|RUVB_VIBFM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|197315781|gb|ACH65228.1| holliday junction DNA helicase RuvB [Vibrio fischeri MJ11]
          Length = 337

 Score =  395 bits (1014), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 191/321 (59%), Positives = 245/321 (76%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           +ED     +RP+ L+++ GQ      +++FI+AA+ R EALDH+L  GPPGLGKTTLA +
Sbjct: 17  EEDVIDRAIRPKKLDDYQGQDHVRGQMEIFIKAAQMREEALDHLLIFGPPGLGKTTLANI 76

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           VA E+GVN R+TSGPV+ KAGDLAALLTNLE+ D+LFIDEIHRLS +VEE+LYPAMED+Q
Sbjct: 77  VANEMGVNIRTTSGPVLEKAGDLAALLTNLEENDILFIDEIHRLSPMVEEVLYPAMEDYQ 136

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           LD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  RL +Y++EDL+ IVQ
Sbjct: 137 LDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEYYKVEDLQHIVQ 196

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A    L++  E A E+A R+RGTPRIA RLLRRVRD+AEV     I+ +IAD AL  L
Sbjct: 197 RSADCLNLSMESEGALEVARRARGTPRIANRLLRRVRDYAEVMSDGNISSDIADKALNML 256

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D  GFD +D + L  I   F GGPVG++ I+A + E RD IED+IEPY+IQQG++QRT
Sbjct: 257 DVDVRGFDYMDRKLLLAIMEKFDGGPVGLDNIAAAIGEERDTIEDVIEPYLIQQGYLQRT 316

Query: 314 PRGRLLMPIAWQHLGIDIPHR 334
           PRGR++   A+ H GID P +
Sbjct: 317 PRGRIVSDRAYLHFGIDKPDK 337


>gi|126174264|ref|YP_001050413.1| Holliday junction DNA helicase RuvB [Shewanella baltica OS155]
 gi|166231552|sp|A3D481|RUVB_SHEB5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|125997469|gb|ABN61544.1| Holliday junction DNA helicase RuvB [Shewanella baltica OS155]
          Length = 334

 Score =  394 bits (1013), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 196/334 (58%), Positives = 251/334 (75%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+   +  +D  I   +RP+ L+E+TGQ    + LKVFI+AAK R EALDH+L 
Sbjct: 1   MIEADRLIQPQIQAQDESIDRAMRPKMLDEYTGQDHTRAQLKVFIQAAKNRNEALDHMLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN +STSGPV+ KAGDLAALLTNLE  DVLFIDEIHRLS 
Sbjct: 61  YGPPGLGKTTLAMIVANEMGVNIKSTSGPVLEKAGDLAALLTNLESGDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ ATTR G LT+PL+ RFGIP+R
Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGALTSPLRARFGIPLR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY I+DL TIV R A++  L +  E A EIA RSRGTPRIA RLLRRVRD+A+V H  
Sbjct: 181 LEFYNIKDLSTIVTRSAQVMELDIDAEGAFEIARRSRGTPRIANRLLRRVRDYAQVKHDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            +T+ +A+ AL  L +D  GFD +D + L  I   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 AVTKFVAEHALDLLDVDSEGFDYMDRKLLLAIIDKFIGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +EP++IQQGFIQRTPRGR+    A+QH  +  P 
Sbjct: 301 LEPFLIQQGFIQRTPRGRIATARAYQHFELIKPE 334


>gi|322616894|gb|EFY13802.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322618132|gb|EFY15024.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322625803|gb|EFY22622.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322626255|gb|EFY23065.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322632669|gb|EFY29414.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322639013|gb|EFY35706.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322640453|gb|EFY37106.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322644218|gb|EFY40763.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322649541|gb|EFY45973.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322655448|gb|EFY51756.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322660227|gb|EFY56465.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322662908|gb|EFY59115.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322668093|gb|EFY64252.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322674147|gb|EFY70241.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322675499|gb|EFY71573.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322683087|gb|EFY79103.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322686781|gb|EFY82759.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323195328|gb|EFZ80508.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323199220|gb|EFZ84315.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323210662|gb|EFZ95540.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323217460|gb|EGA02179.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323224439|gb|EGA08727.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323235924|gb|EGA20003.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323240494|gb|EGA24537.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323245386|gb|EGA29386.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323260267|gb|EGA43888.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323266858|gb|EGA50344.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323269064|gb|EGA52520.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 336

 Score =  394 bits (1013), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 195/333 (58%), Positives = 250/333 (75%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S   +  ED     +RP+ L E+ GQ +  S +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRLISAGATIAEDVADRAIRPKFLAEYVGQPQVRSQMEIFIQAAKLRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IV R A+  GL ++D+ A E+A R+RGTPRIA RLLRRVRDFAEV H  
Sbjct: 181 LEFYQVPDLQHIVGRSARHMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I+ EIA  AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 AISAEIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           +EPY+IQQGF+QRTPRGR+    AW H GI  P
Sbjct: 301 LEPYLIQQGFLQRTPRGRMATVRAWNHFGITPP 333


>gi|30248237|ref|NP_840307.1| Holliday junction DNA helicase B [Nitrosomonas europaea ATCC 19718]
 gi|44888451|sp|Q82XP4|RUVB_NITEU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|30180122|emb|CAD84124.1| ruvB; holliday junction DNA helicase protein [Nitrosomonas europaea
           ATCC 19718]
          Length = 346

 Score =  394 bits (1013), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 198/322 (61%), Positives = 242/322 (75%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           SQE+     LRP  L+++ GQ +    LK+FIEAA+ R EALDHVL  GPPGLGKTTLA 
Sbjct: 15  SQEEVIERALRPVQLDDYVGQEKIREQLKIFIEAARLRQEALDHVLLFGPPGLGKTTLAH 74

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++ARE+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPAMED+
Sbjct: 75  IIAREMGVNLRQTSGPVLERAGDLAALLTNLETNDVLFIDEIHRLSPVVEEILYPAMEDY 134

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           QLD+M+GEG +ARSVKI+L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  ++L  IV
Sbjct: 135 QLDIMIGEGAAARSVKIDLPSFTLVGATTRAGMLTNPLRDRFGIVSRLEFYTADELGKIV 194

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R A L  + VT + A EIA RSRGTPRIA RLLRRVRDFAEV     I R +ADAAL  
Sbjct: 195 TRSAGLLNVDVTADGAREIACRSRGTPRIANRLLRRVRDFAEVRANGRIDRPVADAALQM 254

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D  G D LD + L  +   FGGGPVG++ ++A ++E RD IE+++EPY+IQQGF+QR
Sbjct: 255 LDVDATGLDVLDRKLLLAVLEKFGGGPVGVDNLAAAINEERDTIEEVLEPYLIQQGFLQR 314

Query: 313 TPRGRLLMPIAWQHLGIDIPHR 334
           TPRGR+   +A+QH  I   H+
Sbjct: 315 TPRGRMATTMAYQHFDIIPSHQ 336


>gi|148977428|ref|ZP_01814028.1| Holliday junction DNA helicase B [Vibrionales bacterium SWAT-3]
 gi|145963380|gb|EDK28645.1| Holliday junction DNA helicase B [Vibrionales bacterium SWAT-3]
          Length = 338

 Score =  394 bits (1013), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 191/320 (59%), Positives = 243/320 (75%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
             ED     +RP+ L ++ GQ      +++FI+AA+ R EALDH+L  GPPGLGKTTLA 
Sbjct: 16  KDEDVIDRAIRPKALADYQGQDHVRDQMEIFIKAAQLRNEALDHLLIFGPPGLGKTTLAN 75

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           +VA E+ VN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS +VEE+LYPAMED+
Sbjct: 76  IVANEMDVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPVVEEVLYPAMEDY 135

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  RL +Y++EDL+ IV
Sbjct: 136 QLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGITQRLEYYKVEDLQNIV 195

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           QR A   GL++  E A E+A R+RGTPRIA RLLRRVRD+AEV     I  E+AD+AL  
Sbjct: 196 QRSADCLGLSMEAEGALEVARRARGTPRIANRLLRRVRDYAEVKGDGHICPEVADSALNM 255

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D  GFD +D + L  I   FGGGPVGI+ ++A + E +D IED++EPY+IQQG++QR
Sbjct: 256 LDVDAKGFDYMDRKLLLAIMEKFGGGPVGIDNMAAAIGEEKDTIEDVLEPYLIQQGYLQR 315

Query: 313 TPRGRLLMPIAWQHLGIDIP 332
           TPRGR+    A+ H GID+P
Sbjct: 316 TPRGRIATDRAYLHFGIDLP 335


>gi|94309368|ref|YP_582578.1| Holliday junction DNA helicase RuvB [Cupriavidus metallidurans
           CH34]
 gi|123260400|sp|Q1LRB7|RUVB_RALME RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|93353220|gb|ABF07309.1| ATP-dependent DNA helicase, component of RuvABC resolvasome
           [Cupriavidus metallidurans CH34]
          Length = 355

 Score =  394 bits (1013), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 193/320 (60%), Positives = 242/320 (75%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           +QE+A    LRP+ L+E+ GQ +    L +F+ AA+ R EALDHVL  GPPGLGKTTLA 
Sbjct: 25  TQEEAFERALRPKLLDEYVGQEKVRGQLDIFMHAARKRREALDHVLLFGPPGLGKTTLAH 84

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++ARE+GVN R TSGPV+ + GDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+
Sbjct: 85  IIAREMGVNLRQTSGPVLERPGDLAALLTNLEAHDVLFIDEIHRLSPVVEEILYPALEDY 144

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           Q+D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  ++L  IV
Sbjct: 145 QIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTPDELARIV 204

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R A L   A+    A EIA R+RGTPRIA RLLRRVRDFAEV    TITRE+ADAAL  
Sbjct: 205 ARSALLLNAAIDPAGALEIARRARGTPRIANRLLRRVRDFAEVKSDGTITRELADAALEM 264

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D +GFD +D + L  +   F GGPVG++ ++A + E RD IED++EPYMIQQG++QR
Sbjct: 265 LDVDSVGFDLMDRKLLEAVLHKFDGGPVGVDNLAAAIGEARDTIEDVLEPYMIQQGYLQR 324

Query: 313 TPRGRLLMPIAWQHLGIDIP 332
           TPRGR+    A++H G+  P
Sbjct: 325 TPRGRMATAAAYRHFGLASP 344


>gi|114776333|ref|ZP_01451378.1| holliday junction DNA helicase RuvB [Mariprofundus ferrooxydans
           PV-1]
 gi|114553163|gb|EAU55561.1| holliday junction DNA helicase RuvB [Mariprofundus ferrooxydans
           PV-1]
          Length = 346

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 190/330 (57%), Positives = 252/330 (76%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           ++E LL   ++  D   + LRP+ L+E+ GQ +  +NL V+I+AA+AR E+LDHVL  GP
Sbjct: 4   EQERLLGGEINASDNWDAALRPKKLDEYVGQEKIRANLGVYIKAARARNESLDHVLLYGP 63

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++A E+GV+ R+TSGPVI K GDLAA+LTN+E+ DVLFIDEIHRLS  VE
Sbjct: 64  PGLGKTTLANIIAMEMGVHIRATSGPVIEKPGDLAAMLTNIEEGDVLFIDEIHRLSPQVE 123

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILYPAMEDFQLDL++G+GP+ARS+K+++ RFTL+ ATTR GLLTNPL+DRFG+  RL F
Sbjct: 124 EILYPAMEDFQLDLIIGQGPAARSIKMDIPRFTLVGATTRAGLLTNPLRDRFGVIERLEF 183

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y   +L  I +R A+L  +      A EIA RSRGTPRIA RLLRRVRDFAEV H+  IT
Sbjct: 184 YSHPELTLIAERSARLLNIQTDHGGALEIARRSRGTPRIANRLLRRVRDFAEVEHSGVIT 243

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            ++AD++L RL +D +G D  D R L ++   +GGGPVG++T++A +SE RD IED++EP
Sbjct: 244 GKVADSSLERLEVDHLGLDHQDRRLLAVMIDKYGGGPVGLDTLAASISEERDTIEDVLEP 303

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           Y++Q+G I RTPRGR   P+A+ H+  ++P
Sbjct: 304 YLLQEGLIARTPRGRTATPLAYAHMNRELP 333


>gi|297539681|ref|YP_003675450.1| Holliday junction DNA helicase RuvB [Methylotenera sp. 301]
 gi|297259028|gb|ADI30873.1| Holliday junction DNA helicase RuvB [Methylotenera sp. 301]
          Length = 344

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 192/319 (60%), Positives = 246/319 (77%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           +E+A    LRP+ L+E+ GQ +A S L++FI AA+ R+EALDHVL  GPPGLGKTTLA +
Sbjct: 16  REEALERALRPKLLDEYVGQEKARSQLEIFINAARGRSEALDHVLLFGPPGLGKTTLAHI 75

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +A+E+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPAMED++
Sbjct: 76  IAKEMGVNMRQTSGPVLERAGDLAALLTNLEPNDVLFIDEIHRLSPVVEEILYPAMEDYR 135

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           LD+M+GEGP+ARSV+++L  FTLI ATTR G+LTNPL+DRFGI  RL FY  E+L  IV 
Sbjct: 136 LDIMIGEGPAARSVRLDLPPFTLIGATTRAGMLTNPLRDRFGIVSRLEFYTSEELARIVH 195

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A L  + + D  + EIA RSRGTPRIA RLLRRVRD+A+V     ++ EIADAAL  L
Sbjct: 196 RSAGLLEVEMADTGSLEIARRSRGTPRIANRLLRRVRDYAQVKANGIVSSEIADAALKML 255

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +DK+GFD +D + L  +   FGGGPVG++ ++A + E RD IED++EPY+IQQG++ RT
Sbjct: 256 DVDKLGFDVMDRKLLLAVIEKFGGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGYLMRT 315

Query: 314 PRGRLLMPIAWQHLGIDIP 332
           PRGR+    A+QH  + +P
Sbjct: 316 PRGRIATLQAYQHFELPMP 334


>gi|291612985|ref|YP_003523142.1| Holliday junction DNA helicase RuvB [Sideroxydans lithotrophicus
           ES-1]
 gi|291583097|gb|ADE10755.1| Holliday junction DNA helicase RuvB [Sideroxydans lithotrophicus
           ES-1]
          Length = 351

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 193/319 (60%), Positives = 242/319 (75%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           QE+A    LRP+ L+E+ GQ +    L++FI+AAK R E LDHVL  GPPGLGKTTLAQ+
Sbjct: 22  QEEALDRALRPKQLDEYVGQEKIRGQLEIFIQAAKKRKEPLDHVLLFGPPGLGKTTLAQI 81

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +ARE+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+Q
Sbjct: 82  IAREMGVNIRHTSGPVLERAGDLAALLTNLEPHDVLFIDEIHRLSPVVEEILYPALEDYQ 141

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           +D+M+GEGP ARSVKI+L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  E+L+ IV 
Sbjct: 142 IDIMIGEGPGARSVKIDLPPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTPEELQRIVT 201

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R + L  L ++ + A EIA RSRGTPRIA RLLRRVRD+A+V      TRE+ADAAL  L
Sbjct: 202 RSSGLLELPISPDGALEIARRSRGTPRIANRLLRRVRDYADVRAEGNATREVADAALTML 261

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D  G D +D + L  +   F GGPVG++ ++A + E RD IED++EPY+IQQG++QRT
Sbjct: 262 DVDSRGLDVMDRKLLQTVIEKFMGGPVGVDNLAAAIGEERDTIEDVLEPYLIQQGYLQRT 321

Query: 314 PRGRLLMPIAWQHLGIDIP 332
           PRGR+    A+QH G+  P
Sbjct: 322 PRGRMATANAYQHFGLIQP 340


>gi|127513003|ref|YP_001094200.1| Holliday junction DNA helicase B [Shewanella loihica PV-4]
 gi|166231554|sp|A3QEP3|RUVB_SHELP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|126638298|gb|ABO23941.1| Holliday junction DNA helicase RuvB [Shewanella loihica PV-4]
          Length = 337

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 191/312 (61%), Positives = 241/312 (77%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L+E+TGQ +  + LKVFIEAA+ R EALDH+L  GPPGLGKTTLA +VA E+GVN
Sbjct: 26  MRPKLLDEYTGQDDTRAQLKVFIEAAQKRGEALDHMLIYGPPGLGKTTLAMIVANEMGVN 85

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            +STSGPV+ KAGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPAMED+QLD+M+GEG
Sbjct: 86  IKSTSGPVLEKAGDLAALLTNLEAGDVLFIDEIHRLSPVVEEILYPAMEDYQLDIMIGEG 145

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+K+ L  FTLI ATTR G LT+PL+ RFGIP+RL FY ++DL +IV R AK+  L
Sbjct: 146 PAARSIKLELPPFTLIGATTRAGALTSPLRARFGIPLRLEFYNVKDLSSIVTRSAKVLEL 205

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  E A E+A RSRGTPRIA RLLRRVRD+AEV H   + + +A++AL  L +D  GFD
Sbjct: 206 PIDQEGAVEVARRSRGTPRIANRLLRRVRDYAEVKHDGEVNKVVAESALDMLDVDVEGFD 265

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  I   F GGPVG++ ++A + E R+ IED++EP++IQQGFIQRTPRGR+   
Sbjct: 266 YMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETIEDVLEPFLIQQGFIQRTPRGRIATA 325

Query: 322 IAWQHLGIDIPH 333
            A+QH  +  P 
Sbjct: 326 RAYQHFNLIQPE 337


>gi|326566834|gb|EGE16973.1| Holliday junction DNA helicase RuvB [Moraxella catarrhalis
           103P14B1]
 gi|326569840|gb|EGE19890.1| Holliday junction DNA helicase RuvB [Moraxella catarrhalis BC8]
 gi|326571554|gb|EGE21569.1| Holliday junction DNA helicase RuvB [Moraxella catarrhalis BC7]
 gi|326575166|gb|EGE25094.1| Holliday junction DNA helicase RuvB [Moraxella catarrhalis CO72]
 gi|326576748|gb|EGE26655.1| Holliday junction DNA helicase RuvB [Moraxella catarrhalis
           101P30B1]
 gi|326577576|gb|EGE27453.1| Holliday junction DNA helicase RuvB [Moraxella catarrhalis O35E]
          Length = 329

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 191/319 (59%), Positives = 247/319 (77%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L+  N  ++D     +RP +L+E+ GQ +    +KVFI AA+AR EALDH L  GPPGLG
Sbjct: 6   LIDPNPKKDDTADRAIRPSSLDEYIGQPKVREQMKVFIPAARARGEALDHTLIFGPPGLG 65

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTTLA ++A+E+G N RSTSGPV+ +AGDLAA+LTNLE  DVLFIDEIHRLS ++EEILY
Sbjct: 66  KTTLANIIAKEMGGNLRSTSGPVLERAGDLAAILTNLEAGDVLFIDEIHRLSPVIEEILY 125

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           PAMEDFQLD+M+GEGP+ARS+K++L  FTL+AATTR GLL+ PL DRFGI  RL FY +E
Sbjct: 126 PAMEDFQLDIMIGEGPAARSIKLDLPPFTLVAATTRAGLLSAPLFDRFGIVQRLEFYNVE 185

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           DL TIV+R A+L G+A+ D  A E+A RSRGTPRIA RLLRRVRD+AE+      T +IA
Sbjct: 186 DLTTIVKRSARLLGVAMDDGGALEVAHRSRGTPRIANRLLRRVRDYAEIKGDGVATADIA 245

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
            AAL  LA+DK G DQLD RYL+++++ F GGP G+E ++A ++E R  +ED+IEPY++Q
Sbjct: 246 SAALDMLAVDKQGLDQLDRRYLSVLSQRFHGGPAGVEALAAAMAEDRGTLEDVIEPYLLQ 305

Query: 307 QGFIQRTPRGRLLMPIAWQ 325
           QG+IQRT +GR++    +Q
Sbjct: 306 QGYIQRTSKGRIISDKVFQ 324


>gi|296134720|ref|YP_003641962.1| Holliday junction DNA helicase RuvB [Thiomonas intermedia K12]
 gi|295794842|gb|ADG29632.1| Holliday junction DNA helicase RuvB [Thiomonas intermedia K12]
          Length = 352

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 191/313 (61%), Positives = 238/313 (76%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L+++ GQ      L +FI AA+ R EALDHVL  GPPGLGKTTLA +VARE+GVN
Sbjct: 32  LRPQQLDDYVGQARVREQLDIFIGAARKREEALDHVLLFGPPGLGKTTLAHIVAREMGVN 91

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            RSTSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+Q+D+++GEG
Sbjct: 92  LRSTSGPVLERAGDLAALLTNLERNDVLFIDEIHRLSPVVEEILYPALEDYQIDILIGEG 151

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P ARSVKI+L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  E+L  IV R AKL G 
Sbjct: 152 PGARSVKIDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTAEELTRIVLRSAKLLGA 211

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  + A EIA R+RGTPRIA RLLRRVRD+A++  A  I+ E+ADAAL  L +D +GFD
Sbjct: 212 VIDPDGAVEIARRARGTPRIANRLLRRVRDYADMKAAGRISAEVADAALRMLDVDSLGFD 271

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   F GGPVG++ ++A + E RD IED+IEPY+IQQG++QRTPRGR+   
Sbjct: 272 VMDRKLLEAVVHRFDGGPVGLDNLAAAIGEERDTIEDVIEPYLIQQGYLQRTPRGRIATA 331

Query: 322 IAWQHLGIDIPHR 334
             + HLG+  P R
Sbjct: 332 ATYAHLGLAAPQR 344


>gi|260912904|ref|ZP_05919389.1| crossover junction endoribonuclease subunit B [Pasteurella dagmatis
           ATCC 43325]
 gi|260632894|gb|EEX51060.1| crossover junction endoribonuclease subunit B [Pasteurella dagmatis
           ATCC 43325]
          Length = 336

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 189/330 (57%), Positives = 248/330 (75%), Gaps = 1/330 (0%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + ++S  V  +D  I   +RP+ L ++ GQ + C  + +FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRIISATVKLDDEVIDRAIRPKLLSDYVGQPQVCEQMDIFIQAAKLRQDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            +EE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 AIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY ++DL +IV R A    L + D A+ EIA RSRGTPRIA RLLRRVRDFA+V +  
Sbjct: 181 LEFYSVDDLTSIVTRSANCLNLIIADNASYEIARRSRGTPRIANRLLRRVRDFADVRNGG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I+ +IA AAL+ L +D  GFD LD + L+ +   F GGPVG++ ++A + E RD IED+
Sbjct: 241 VISEDIAKAALMMLDVDDAGFDYLDRKLLSAVIERFDGGPVGLDNLAAAIGEERDTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           +EPY+IQQGF+QRTPRGR+     ++H G+
Sbjct: 301 LEPYLIQQGFLQRTPRGRMATSRTYRHFGV 330


>gi|209517514|ref|ZP_03266354.1| Holliday junction DNA helicase RuvB [Burkholderia sp. H160]
 gi|209502047|gb|EEA02063.1| Holliday junction DNA helicase RuvB [Burkholderia sp. H160]
          Length = 353

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 193/319 (60%), Positives = 242/319 (75%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
            E+A    LRPR L+E+ GQ +    L++FIEAAK R+E+LDHVL  GPPGLGKTTLA +
Sbjct: 21  NEEAFERALRPRQLDEYVGQEKVRGQLEIFIEAAKRRSESLDHVLLFGPPGLGKTTLAHI 80

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +ARE+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+Q
Sbjct: 81  IAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDYQ 140

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           +D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  E+L  IV 
Sbjct: 141 IDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYNAEELARIVT 200

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A L    +  + A EIA R+RGTPRIA RLLRRVRDFAEV     IT ++ADAAL  L
Sbjct: 201 RSASLLRAQIHPDGALEIARRARGTPRIANRLLRRVRDFAEVKADGNITAQVADAALRML 260

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D +GFD +D + L  I   F GGPVG++ ++A + E RD IED++EPY+IQQGF+QRT
Sbjct: 261 DVDAVGFDLMDRKLLEAILYKFDGGPVGVDNLAAAIGEERDTIEDVLEPYLIQQGFLQRT 320

Query: 314 PRGRLLMPIAWQHLGIDIP 332
           PRGR+   + ++H G+  P
Sbjct: 321 PRGRVATLLTYRHFGLAAP 339


>gi|330991873|ref|ZP_08315822.1| Holliday junction ATP-dependent DNA helicase ruvB
           [Gluconacetobacter sp. SXCC-1]
 gi|329760894|gb|EGG77389.1| Holliday junction ATP-dependent DNA helicase ruvB
           [Gluconacetobacter sp. SXCC-1]
          Length = 353

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 207/324 (63%), Positives = 250/324 (77%), Gaps = 2/324 (0%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
            +ED     LRP+TL++FTGQ  +  NL +FI AA+ R +ALDHVL  GPPGLGKTTLAQ
Sbjct: 14  GEEDGGEGTLRPQTLDDFTGQKASRENLAIFIAAARQRGDALDHVLLHGPPGLGKTTLAQ 73

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           +VARELGV FR+TSGPVI +AGDLAA+LTNL+ RDVLFIDEIHRL   +EE+LYPAMEDF
Sbjct: 74  IVARELGVGFRATSGPVIQRAGDLAAILTNLQPRDVLFIDEIHRLHPAIEEVLYPAMEDF 133

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           QLDL++GEGP+ARSV+I+L+ FTL+AATTR GLL  PL+DRFGIP+RL FY  E+L  IV
Sbjct: 134 QLDLIIGEGPAARSVRIDLAPFTLVAATTRAGLLATPLRDRFGIPLRLVFYTPEELCQIV 193

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA--KTITREIADAAL 250
            RGA+     +T E A EIA RSRGTPRIAGRLLRRVRDFA VA A    + R +ADAAL
Sbjct: 194 TRGARKLEFDLTPEGAEEIARRSRGTPRIAGRLLRRVRDFAAVARAGRGPVDRALADAAL 253

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
            RL +D MG D +D RYL  IA    GGPVG+ET++A L+E RD +ED+IEPY+IQ+G +
Sbjct: 254 SRLEVDSMGLDGMDRRYLRRIAEYHHGGPVGVETLAAALAEARDTLEDVIEPYLIQEGLV 313

Query: 311 QRTPRGRLLMPIAWQHLGIDIPHR 334
            RT RGR+L    W+HLG+  P R
Sbjct: 314 LRTSRGRMLGERGWRHLGLQPPAR 337


>gi|218513560|ref|ZP_03510400.1| Holliday junction DNA helicase RuvB [Rhizobium etli 8C-3]
          Length = 263

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 192/249 (77%), Positives = 222/249 (89%)

Query: 85  TSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSA 144
           TSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRL+  VEEILYPAMEDFQLDL++GEGP+A
Sbjct: 1   TSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLNPAVEEILYPAMEDFQLDLIIGEGPAA 60

Query: 145 RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVT 204
           RSVKI+LS+FTL+AATTR+GLLT PL+DRFGIP+RL+FY +E+L+ IV+RGA+L  L +T
Sbjct: 61  RSVKIDLSKFTLVAATTRLGLLTTPLRDRFGIPVRLSFYTVEELELIVRRGARLMNLPMT 120

Query: 205 DEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLD 264
           +E A EIA R+RGTPRIAG  +RRVRDFAEVA A+ +TREIAD AL RL +D +GFDQLD
Sbjct: 121 EEGAREIARRARGTPRIAGGQMRRVRDFAEVARAEAVTREIADEALTRLLVDNVGFDQLD 180

Query: 265 LRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAW 324
            RYL MIA NFGGGPVGIETI+AGLSEPRDAIED+IEPYMIQQGFIQRTPRGR+L  IAW
Sbjct: 181 KRYLNMIAVNFGGGPVGIETIAAGLSEPRDAIEDIIEPYMIQQGFIQRTPRGRVLTAIAW 240

Query: 325 QHLGIDIPH 333
           +HLG+  P 
Sbjct: 241 KHLGMQPPK 249


>gi|192359396|ref|YP_001981527.1| Holliday junction DNA helicase RuvB [Cellvibrio japonicus Ueda107]
 gi|238692419|sp|B3PB59|RUVB_CELJU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|190685561|gb|ACE83239.1| Holliday junction DNA helicase RuvB [Cellvibrio japonicus Ueda107]
          Length = 346

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 195/321 (60%), Positives = 243/321 (75%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           +ED     +RP+ L ++ GQ      +++FI AAK R EALDH L  GPPGLGKTTLA +
Sbjct: 15  REDQLDRAVRPKVLADYVGQPAVREQMEIFICAAKKRREALDHTLVFGPPGLGKTTLANI 74

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +A E+GV+ +STSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS +VEEILYPAMEDFQ
Sbjct: 75  IANEMGVSLKSTSGPVLEKAGDLAAMLTNLEAGDVLFIDEIHRLSPVVEEILYPAMEDFQ 134

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           LD+M+GEGP+ARS+K++L  FTL+ ATTR GLLT+PL+DRFGI  RL FY ++DL  IV 
Sbjct: 135 LDIMIGEGPAARSIKLDLPPFTLVGATTRAGLLTSPLRDRFGIVQRLEFYNVKDLTHIVA 194

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A L G+++ +  A EIA RSRGTPRIA RLLRRVRDFAEV     IT E+AD AL  L
Sbjct: 195 RSAALLGVSMEELGAAEIAKRSRGTPRIANRLLRRVRDFAEVKGDGRITSELADKALNML 254

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D+ GFD +D R L  +  NF GGPVG+E+++A +SE R  IED+IEPY+IQQGF+ RT
Sbjct: 255 NVDERGFDHMDRRLLLAMINNFDGGPVGVESLAAAISEDRGTIEDVIEPYLIQQGFMART 314

Query: 314 PRGRLLMPIAWQHLGIDIPHR 334
           PRGR+L   A+ H G+ +P R
Sbjct: 315 PRGRVLTTNAYLHFGLSMPKR 335


>gi|212711935|ref|ZP_03320063.1| hypothetical protein PROVALCAL_03010 [Providencia alcalifaciens DSM
           30120]
 gi|212685457|gb|EEB44985.1| hypothetical protein PROVALCAL_03010 [Providencia alcalifaciens DSM
           30120]
          Length = 336

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 195/331 (58%), Positives = 252/331 (76%), Gaps = 2/331 (0%)

Query: 1   MMDREGLLSRNV--SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M++ + L++  V  S+E+A    +RP+ L+E+ GQ +    +++FI+AAK R +ALDH+L
Sbjct: 1   MIEADRLITAEVLHSEEEAIDRAIRPKLLDEYIGQPQVKHQMEIFIQAAKMRGDALDHLL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA +VA ELGVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS
Sbjct: 61  IFGPPGLGKTTLAGIVANELGVNLRTTSGPVLEKAGDLAAILTNLEPHDVLFIDEIHRLS 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            +VEEILYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  
Sbjct: 121 PVVEEILYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQ 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           RL FY+++DL+ IV+R A+  GL +T+E A ++AMRSRGTPRI  RLLRRVRDFA+V   
Sbjct: 181 RLEFYQVDDLQHIVKRSAQYMGLDITEEGALQVAMRSRGTPRITNRLLRRVRDFAQVKGN 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
            +I   IA  AL  L +D  GFD LD + L  I   F GGPVG++ ++A + E R+ IED
Sbjct: 241 GSIDELIASQALDMLNVDAAGFDYLDRKLLVAIIDKFMGGPVGVDNLAAAIGEERETIED 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           ++EPY+IQQGFIQRTPRGR+    A+ H G+
Sbjct: 301 VLEPYLIQQGFIQRTPRGRMATAHAYLHFGL 331


>gi|37526028|ref|NP_929372.1| Holliday junction DNA helicase B [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|44888379|sp|Q7N547|RUVB_PHOLL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|36785458|emb|CAE14405.1| Holliday junction DNA helicase [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 335

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 192/330 (58%), Positives = 250/330 (75%), Gaps = 1/330 (0%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S  V Q+D  I   +RP+ L E+ GQ + C  +++FI+AA+ R +ALDH+L 
Sbjct: 1   MIEADRLVSAEVLQDDEAIDRAIRPKLLSEYVGQPQVCEQMEIFIQAARQRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY ++DL++IV R A+  G+ +TD+ A ++AMRSRGTPRI  RLLRRVRDFA+V    
Sbjct: 181 LEFYNVDDLQSIVSRSARFMGVEITDDGARQVAMRSRGTPRITNRLLRRVRDFAQVKGNG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I   IA  AL  L++D  GFD LD + L  I   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 AIDGNIATRALDMLSVDAAGFDYLDRKLLIAIIDKFMGGPVGVDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           +EP++IQQGFIQRT RGR+    A++H G+
Sbjct: 301 LEPFLIQQGFIQRTSRGRIATEHAYRHFGM 330


>gi|300692491|ref|YP_003753486.1| ATP-dependent DNA helicase, subunit B of RuvABC Holliday junction
           resolvasome [Ralstonia solanacearum PSI07]
 gi|299079551|emb|CBJ52229.1| ATP-dependent DNA helicase, subunit B of RuvABC Holliday junction
           resolvasome [Ralstonia solanacearum PSI07]
          Length = 357

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 193/319 (60%), Positives = 239/319 (74%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
            E+A    LRP+ L+E+ GQ +    L +F+ AAK R EALDHVL  GPPGLGKTTLA +
Sbjct: 26  NEEAFERALRPKLLDEYVGQEKVRGQLDIFMTAAKKRREALDHVLLFGPPGLGKTTLAHI 85

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +ARE+GVN R TSGPV+ + GDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+Q
Sbjct: 86  IAREMGVNLRQTSGPVLERPGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDYQ 145

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           +D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY   +L  IV+
Sbjct: 146 IDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTPTELARIVK 205

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A L    + D+ A EIA RSRGTPRIA RLLRRVRD+AEV     ITR +ADAAL  L
Sbjct: 206 RSAGLLDAQIVDDGALEIAKRSRGTPRIANRLLRRVRDYAEVKADGIITRAVADAALAML 265

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D +GFD +D + L  I   F GGPVGI+ ++A + E RD IED++EPY+IQQG++QRT
Sbjct: 266 DVDAVGFDLMDRKLLEAILHKFNGGPVGIDNLAAAIGEERDTIEDVLEPYLIQQGYLQRT 325

Query: 314 PRGRLLMPIAWQHLGIDIP 332
           PRGR+    A+QH G+  P
Sbjct: 326 PRGRVATASAYQHFGLGAP 344


>gi|86146484|ref|ZP_01064807.1| Holliday junction DNA helicase RuvB [Vibrio sp. MED222]
 gi|218709102|ref|YP_002416723.1| Holliday junction DNA helicase RuvB [Vibrio splendidus LGP32]
 gi|254767450|sp|B7VMI4|RUVB_VIBSL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|85835747|gb|EAQ53882.1| Holliday junction DNA helicase RuvB [Vibrio sp. MED222]
 gi|218322121|emb|CAV18234.1| Holliday junction DNA helicase ruvB [Vibrio splendidus LGP32]
          Length = 338

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 191/320 (59%), Positives = 241/320 (75%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
             ED     +RP+ L ++ GQ      +++FI+AA+ R EALDH+L  GPPGLGKTTLA 
Sbjct: 16  KDEDVIDRAIRPKALADYQGQDHVRGQMEIFIKAAQMRNEALDHLLIFGPPGLGKTTLAN 75

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           +VA E+ VN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS +VEE+LYPAMED+
Sbjct: 76  IVANEMDVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPVVEEVLYPAMEDY 135

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  RL +Y++EDL+ IV
Sbjct: 136 QLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGITQRLEYYKVEDLQNIV 195

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           QR A   GL++  + A E+A R+RGTPRIA RLLRRVRD+AEV     I  E+AD AL  
Sbjct: 196 QRSADCLGLSMESQGALEVARRARGTPRIANRLLRRVRDYAEVKGDGHICPEVADKALNM 255

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D  GFD +D + L  I   FGGGPVGI+ ++A + E RD IED++EPY+IQQG++QR
Sbjct: 256 LDVDAKGFDYMDRKLLLAIMEKFGGGPVGIDNMAAAIGEERDTIEDVLEPYLIQQGYLQR 315

Query: 313 TPRGRLLMPIAWQHLGIDIP 332
           TPRGR+    A+ H GID P
Sbjct: 316 TPRGRIATDRAYLHFGIDKP 335


>gi|145590059|ref|YP_001156656.1| Holliday junction DNA helicase B [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|145048465|gb|ABP35092.1| Holliday junction DNA helicase RuvB [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 356

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 191/311 (61%), Positives = 237/311 (76%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L+E+ GQ +A + L++FI A +AR EALDHVL  GPPGLGKTTLA ++ARELGVN
Sbjct: 38  LRPKQLDEYVGQTKARAQLEIFISATRARQEALDHVLLFGPPGLGKTTLAHIIARELGVN 97

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGPV+ + GDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+ LD+M+GEG
Sbjct: 98  LRQTSGPVLDRPGDLAALLTNLETNDVLFIDEIHRLSPVVEEILYPALEDYSLDIMIGEG 157

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARSVKI+L  FTLI ATTR G+LTNPL+DRFGI  RL FY  E+L  I+ R A L   
Sbjct: 158 PAARSVKIDLKPFTLIGATTRAGMLTNPLRDRFGIVARLEFYTTEELTKIITRSASLLKA 217

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
           ++  E + EIA R+RGTPRIA RLLRRVRD+AEV    TIT+ +ADAAL  L +D  GFD
Sbjct: 218 SIDPEGSIEIAKRARGTPRIANRLLRRVRDYAEVKGTGTITKAMADAALKMLDVDPSGFD 277

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  I   F GGPVGI+ ++A + E RD IED++EPY+IQQG++QRT RGR+   
Sbjct: 278 VMDRKLLEAILHKFDGGPVGIDNLAAAIGEERDTIEDVLEPYLIQQGYLQRTSRGRVATR 337

Query: 322 IAWQHLGIDIP 332
            A++H G+  P
Sbjct: 338 QAYEHFGLTPP 348


>gi|238919503|ref|YP_002933018.1| holliday junction DNA helicase RuvB, [Edwardsiella ictaluri 93-146]
 gi|259495665|sp|C5B9T2|RUVB_EDWI9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|238869072|gb|ACR68783.1| holliday junction DNA helicase RuvB, putative [Edwardsiella
           ictaluri 93-146]
          Length = 334

 Score =  392 bits (1008), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 191/309 (61%), Positives = 239/309 (77%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+TL ++ GQ +    +++FI+AAK R +ALDH+L  GPPGLGKTTLA +VA E+GVN
Sbjct: 23  IRPKTLADYVGQPQVRGQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS +VEE+LYPAMED+QLD+M+GEG
Sbjct: 83  LRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEG 142

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+KI+L  FTL+ ATTR G LT+PL+DRFGI  RL FY++ DL+ IV R A   GL
Sbjct: 143 PAARSIKIDLPPFTLVGATTRAGSLTSPLRDRFGIVQRLEFYQVADLQHIVGRSAHCLGL 202

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
           A+TDE A E+A RSRGTPRIA RLLRRVRDFAEV     I  E+A  AL  L +D  GFD
Sbjct: 203 ALTDEGALEVARRSRGTPRIANRLLRRVRDFAEVCADGRIDGEVAAQALNMLDVDAAGFD 262

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   F GGPVG++ ++A + E R+ IED++EPY+IQQGFIQRTPRGR+   
Sbjct: 263 YMDRKLLLAVIDKFMGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFIQRTPRGRIATV 322

Query: 322 IAWQHLGID 330
            A+QH GID
Sbjct: 323 HAYQHFGID 331


>gi|204930997|ref|ZP_03221823.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|204320041|gb|EDZ05246.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
          Length = 336

 Score =  392 bits (1008), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 194/333 (58%), Positives = 250/333 (75%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S   +  ED     +RP+ L E+ GQ +  S +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRLISAGATIAEDVADRAIRPKFLAEYVGQPQVRSQMEIFIQAAKLRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IV R A+  GL ++D+ A E+A R+RGTPRIA RLLRRVRDFAEV H  
Sbjct: 181 LEFYQVPDLQHIVGRSARHMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I+ EIA  AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 AISAEIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           +EPY+IQ+GF+QRTPRGR+    AW H GI  P
Sbjct: 301 LEPYLIQRGFLQRTPRGRMATVRAWNHFGITPP 333


>gi|189183541|ref|YP_001937326.1| Holliday junction DNA helicase RuvB [Orientia tsutsugamushi str.
           Ikeda]
 gi|238692239|sp|B3CRA8|RUVB_ORITI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|189180312|dbj|BAG40092.1| holliday junction DNA helicase RuvB [Orientia tsutsugamushi str.
           Ikeda]
          Length = 325

 Score =  392 bits (1008), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 192/324 (59%), Positives = 247/324 (76%), Gaps = 1/324 (0%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           +  LL   V+ E+ + ++LRP  L +FTGQ +  SNLK+FI ++  R E+LDH L  GPP
Sbjct: 2   KNQLLDAKVASEEQE-TVLRPSLLNDFTGQNQMKSNLKIFITSSIERDESLDHTLLHGPP 60

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTT+AQ++A+E  VN +ST+GP+++KA DLAA+LTNL+  DVLFIDEIHRL+I VEE
Sbjct: 61  GLGKTTIAQIIAKEKNVNLKSTAGPILSKAADLAAILTNLQKNDVLFIDEIHRLNIHVEE 120

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILY AMEDF LD+M+GEGPSARSVKI L +FTLI ATTR+GL++ PL DRFGI ++LNFY
Sbjct: 121 ILYSAMEDFSLDIMIGEGPSARSVKIYLPKFTLIGATTRLGLISKPLCDRFGIHLKLNFY 180

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
             E+L  IV+RGAK+  +A+   AA EIA RSRGTPRIA RLL+RVRDF    +   + +
Sbjct: 181 SCEELTKIVERGAKVLNVALDTNAAIEIANRSRGTPRIALRLLKRVRDFGIYQNINPLNQ 240

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           +I D AL +L IDK+G D  D +YL  IA N+ GGPVGI+TI+A LSE RD IE++IEPY
Sbjct: 241 QITDYALNQLGIDKLGLDSSDHKYLRFIAENYDGGPVGIDTIAAALSEQRDTIEEMIEPY 300

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHL 327
           +IQ GF+QRT RGR++   A +HL
Sbjct: 301 LIQIGFVQRTQRGRVITANALKHL 324


>gi|292488537|ref|YP_003531421.1| Holliday junction ATP-dependent DNA helicase ruvB [Erwinia
           amylovora CFBP1430]
 gi|292899713|ref|YP_003539082.1| Holliday junction DNA helicase [Erwinia amylovora ATCC 49946]
 gi|291199561|emb|CBJ46678.1| Holliday junction DNA helicase [Erwinia amylovora ATCC 49946]
 gi|291553968|emb|CBA21013.1| Holliday junction ATP-dependent DNA helicase ruvB [Erwinia
           amylovora CFBP1430]
 gi|312172680|emb|CBX80936.1| Holliday junction ATP-dependent DNA helicase ruvB [Erwinia
           amylovora ATCC BAA-2158]
          Length = 334

 Score =  392 bits (1008), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 192/318 (60%), Positives = 244/318 (76%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +++E+     +RP+ LEE+ GQ      +++FI+AA+ R +ALDH+L  GPPGLGKTTLA
Sbjct: 13  ITEEEVIDRAIRPKMLEEYVGQQVVREQMEIFIKAAQMRGDALDHLLIFGPPGLGKTTLA 72

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS +VEE+LYPAMED
Sbjct: 73  NIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMED 132

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           +QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  RL FY +EDL+ I
Sbjct: 133 YQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYRVEDLQHI 192

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           V R A   GL ++DE A EIA R+RGTPRIA RLLRRVRDFAEV  A  ++ E+A  AL 
Sbjct: 193 VGRSAACLGLPLSDEGALEIARRARGTPRIANRLLRRVRDFAEVRAAGEMSGEVASRALD 252

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L++D  GFD +D + L  I   F GGPVG++ ++A + E R+ IED++EPY+IQQGFIQ
Sbjct: 253 MLSVDSQGFDYMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFIQ 312

Query: 312 RTPRGRLLMPIAWQHLGI 329
           RTPRGRL    A+QH GI
Sbjct: 313 RTPRGRLATQHAYQHFGI 330


>gi|84388520|ref|ZP_00991067.1| Holliday junction DNA helicase RuvB [Vibrio splendidus 12B01]
 gi|84377069|gb|EAP93940.1| Holliday junction DNA helicase RuvB [Vibrio splendidus 12B01]
          Length = 338

 Score =  392 bits (1008), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 191/318 (60%), Positives = 242/318 (76%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           ED     +RP+ L ++ GQ    + +++FI+AA+ R EALDH+L  GPPGLGKTTLA +V
Sbjct: 18  EDVIDRAIRPKALADYQGQDHVRNQMEIFIQAAQMRNEALDHLLIFGPPGLGKTTLANIV 77

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A E+ V+ R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS +VEE+LYPAMED+QL
Sbjct: 78  ANEMDVSIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPVVEEVLYPAMEDYQL 137

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  RL +Y++EDL+ IVQR
Sbjct: 138 DIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGITQRLEYYKVEDLQNIVQR 197

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A   GL++  E A EIA R+RGTPRIA RLLRRVRD+AEV     I  ++AD AL  L 
Sbjct: 198 SADCLGLSLESEGALEIARRARGTPRIANRLLRRVRDYAEVKGNGHICPDVADKALNMLD 257

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D  GFD +D + L  I   FGGGPVGI+ ++A + E RD IED++EPY+IQQG++QRTP
Sbjct: 258 VDAKGFDYMDRKLLLAIMEKFGGGPVGIDNMAAAIGEERDTIEDVLEPYLIQQGYLQRTP 317

Query: 315 RGRLLMPIAWQHLGIDIP 332
           RGR+    A+ H GID P
Sbjct: 318 RGRIATDRAYLHFGIDKP 335


>gi|170726917|ref|YP_001760943.1| Holliday junction DNA helicase RuvB [Shewanella woodyi ATCC 51908]
 gi|238688664|sp|B1KGX9|RUVB_SHEWM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|169812264|gb|ACA86848.1| Holliday junction DNA helicase RuvB [Shewanella woodyi ATCC 51908]
          Length = 338

 Score =  392 bits (1008), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 191/313 (61%), Positives = 244/313 (77%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L+E+TGQ ++ + LK+FI+AA+ R EALDH+L  GPPGLGKTTLA +VA E+GVN
Sbjct: 26  MRPKMLDEYTGQDDSRAQLKIFIQAAQNRDEALDHMLIYGPPGLGKTTLAMIVANEMGVN 85

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            +STSGPV+ KAGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPAMED+QLD+M+GEG
Sbjct: 86  IKSTSGPVLEKAGDLAALLTNLEPGDVLFIDEIHRLSSVVEEILYPAMEDYQLDIMIGEG 145

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+K++L  FTLI ATTR G LT+PL+ RFGIP+RL FY ++DL +IV R A +  L
Sbjct: 146 PAARSIKLDLPPFTLIGATTRAGALTSPLRARFGIPLRLEFYNVKDLSSIVTRSANVLEL 205

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + +  A E+A RSRGTPRIA RLLRRVRDFAEV H   IT+++A+ AL  L ID  GFD
Sbjct: 206 PIDEAGAIELARRSRGTPRIANRLLRRVRDFAEVKHDGEITKQVAELALDMLDIDSEGFD 265

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  I   F GGPVG++ ++A + E R+ IED++EP++IQQGFIQRTPRGR+   
Sbjct: 266 YMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETIEDVLEPFLIQQGFIQRTPRGRIATD 325

Query: 322 IAWQHLGIDIPHR 334
            A++H  I  P +
Sbjct: 326 RAYRHFDIIQPEK 338


>gi|253699566|ref|YP_003020755.1| Holliday junction DNA helicase RuvB [Geobacter sp. M21]
 gi|259495668|sp|C6E1S8|RUVB_GEOSM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|251774416|gb|ACT16997.1| Holliday junction DNA helicase RuvB [Geobacter sp. M21]
          Length = 337

 Score =  392 bits (1007), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 192/322 (59%), Positives = 246/322 (76%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L+S + S++D   + LRPR L ++ GQ +A  NL +FI+AA+ R EALDHVL  GPPGLG
Sbjct: 4   LISADKSEDDLLEASLRPRALSDYVGQEKAKGNLGLFIDAARGRGEALDHVLLYGPPGLG 63

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTTLA ++A E+GVN +STSGPVI + GDLAA+LTNLE  DVLFIDEIHRLS +VEEILY
Sbjct: 64  KTTLANIIACEMGVNIKSTSGPVIERPGDLAAILTNLEAHDVLFIDEIHRLSHVVEEILY 123

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           PAMEDFQLD+++G+GPSAR++K++L +FTL+ ATTR GLL++PL+DRFG+  RL FY  +
Sbjct: 124 PAMEDFQLDIIIGQGPSARTIKLDLPKFTLVGATTRAGLLSSPLRDRFGVISRLEFYTHD 183

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +L  I+ R A++ G+A+  E A E+A RSRGTPRIA RLLRRVRDFA+V     ITR +A
Sbjct: 184 ELAFIITRSARIFGMAIAPEGAMELARRSRGTPRIANRLLRRVRDFAQVRADGVITRAVA 243

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           D AL  L ID+MGFD +D   L  I   FGGGPVG++TI+A +SE  D IED+ EP++IQ
Sbjct: 244 DQALALLEIDEMGFDMMDRAILLTIIDKFGGGPVGLDTIAAAISEESDTIEDVYEPFLIQ 303

Query: 307 QGFIQRTPRGRLLMPIAWQHLG 328
            GF+ RTPRGR+    A+ H G
Sbjct: 304 NGFLNRTPRGRVATAAAYSHFG 325


>gi|15602841|ref|NP_245913.1| Holliday junction DNA helicase B [Pasteurella multocida subsp.
           multocida str. Pm70]
 gi|13431840|sp|P57892|RUVB_PASMU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|12721302|gb|AAK03060.1| RuvB [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 335

 Score =  392 bits (1007), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 186/309 (60%), Positives = 237/309 (76%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L ++ GQ   C  + +FI+AAK R +ALDH+L  GPPGLGKTTLA +VA E+GVN
Sbjct: 23  IRPKLLNDYVGQPHVCEQMAIFIQAAKLRQDALDHLLIFGPPGLGKTTLANIVAHEMGVN 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS  +EE+LYPAMED+QLD+M+GEG
Sbjct: 83  IRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEG 142

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  RL FY +EDL +IV R A    L
Sbjct: 143 PAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYAVEDLTSIVARSANCLNL 202

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
           +++D A  EIA RSRGTPRIA RLLRRVRDFA+V HA  I+ E A AALL L +D  GFD
Sbjct: 203 SISDTACYEIARRSRGTPRIANRLLRRVRDFADVRHAGIISEESAKAALLMLDVDDAGFD 262

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            LD + L  +   F GGPVG++ ++A + E R+ IED++EPY+IQQGF+QRTPRGR+   
Sbjct: 263 YLDRKLLNAVIERFDGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMATS 322

Query: 322 IAWQHLGID 330
             +++ G++
Sbjct: 323 RTYRYFGLE 331


>gi|269103017|ref|ZP_06155714.1| holliday junction DNA helicase RuvB [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268162915|gb|EEZ41411.1| holliday junction DNA helicase RuvB [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 336

 Score =  392 bits (1007), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 195/335 (58%), Positives = 251/335 (74%), Gaps = 3/335 (0%)

Query: 1   MMDREGLLSRNVS---QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M++ + L+S N +   +ED     +RP+ L+++ GQ      +++FI+AAK R EALDH+
Sbjct: 1   MIEADRLISANHTTSREEDVIDRAIRPKLLQDYRGQDHVRDQMEIFIKAAKLRNEALDHL 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTLA +VA E+ VN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRL
Sbjct: 61  LIFGPPGLGKTTLANIVANEMDVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           S  +EEILYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI 
Sbjct: 121 SPHIEEILYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIT 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            RL +Y++EDLK IV+R A   GL++ +  A E+AMRSRGTPRIA RLLRRVRD+AEV  
Sbjct: 181 QRLEYYKVEDLKNIVKRSADCLGLSMEEAGAMEVAMRSRGTPRIANRLLRRVRDYAEVKG 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
              I  ++A  AL  L +D  GFD +D + L  I   F GGPVG++ ++A + E RD IE
Sbjct: 241 DGHICPDVASKALDMLDVDSSGFDYMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERDTIE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           D++EPY+IQQGF+QRTPRGR+    A+ H G+DIP
Sbjct: 301 DVLEPYLIQQGFLQRTPRGRIATHRAYLHFGLDIP 335


>gi|284007613|emb|CBA73225.1| Holliday junction ATP-dependent DNA helicase [Arsenophonus
           nasoniae]
          Length = 338

 Score =  392 bits (1007), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 196/334 (58%), Positives = 249/334 (74%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLS-RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S  N+  E+     +RP+ L E+ GQ + C  +++FI+AAK RAEALDH+L 
Sbjct: 1   MIEADRLVSAENLPDEEVIDRAIRPKLLTEYVGQPQVCQQMEIFIQAAKLRAEALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA ELG N R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLAGIVANELGSNLRTTSGPVLEKAGDLAAMLTNLEPNDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPAMED+QLD+M+GEGP+ARS+KI+L  FTL+ ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLVGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY ++DL+TIV R A   GL ++D  A +IAMRSRGTPRI  RLLRRVRDFA+V    
Sbjct: 181 LEFYNVDDLQTIVLRSAGFMGLEISDAGARQIAMRSRGTPRITNRLLRRVRDFAQVKGNG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I   IA  AL  L +D  GFD LD + L  I   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 IIDGTIAAQALDMLNVDTAGFDYLDRKLLIAIIDKFMGGPVGLDNVAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +EP++IQQGFIQRTPRGR+    A++H G++  H
Sbjct: 301 LEPFLIQQGFIQRTPRGRIATDHAYRHFGLNKDH 334


>gi|268589736|ref|ZP_06123957.1| holliday junction DNA helicase RuvB [Providencia rettgeri DSM 1131]
 gi|291314888|gb|EFE55341.1| holliday junction DNA helicase RuvB [Providencia rettgeri DSM 1131]
          Length = 336

 Score =  392 bits (1007), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 194/331 (58%), Positives = 250/331 (75%), Gaps = 2/331 (0%)

Query: 1   MMDREGLLSRNVSQEDADI--SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M++ + L++  V Q D +     +RP+ L E+ GQ +    +++FI+AAK R +ALDH+L
Sbjct: 1   MIEADRLITAEVLQSDEEAIDRAIRPKLLNEYIGQPQVKDQMEIFIQAAKMRGDALDHLL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA +VA ELGVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS
Sbjct: 61  IFGPPGLGKTTLAGIVANELGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLS 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            +VEEILYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  
Sbjct: 121 PVVEEILYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQ 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           RL FY+++DL+ IV+R A+  GL +T+E A ++AMRSRGTPRI  RLLRRVRDFA+V   
Sbjct: 181 RLEFYQVDDLQHIVKRSAQYMGLDITEEGALQVAMRSRGTPRITNRLLRRVRDFAQVKGD 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
            +I   IA+ AL  L +D  GFD LD + L  I   F GGPVG++ ++A + E R+ IED
Sbjct: 241 GSIDGLIANQALDMLNVDAAGFDYLDRKLLVAIIDKFMGGPVGVDNLAAAIGEERETIED 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           ++EPY+IQQGFIQRTPRGR+    A+ H G+
Sbjct: 301 VLEPYLIQQGFIQRTPRGRMATVHAYNHFGL 331


>gi|83749322|ref|ZP_00946319.1| RuvB [Ralstonia solanacearum UW551]
 gi|207727945|ref|YP_002256339.1| holliday junction dna helicase ruvb protein [Ralstonia solanacearum
           MolK2]
 gi|207742351|ref|YP_002258743.1| holliday junction dna helicase ruvb protein [Ralstonia solanacearum
           IPO1609]
 gi|83724000|gb|EAP71181.1| RuvB [Ralstonia solanacearum UW551]
 gi|206591188|emb|CAQ56800.1| holliday junction dna helicase ruvb protein [Ralstonia solanacearum
           MolK2]
 gi|206593741|emb|CAQ60668.1| holliday junction dna helicase ruvb protein [Ralstonia solanacearum
           IPO1609]
          Length = 357

 Score =  392 bits (1006), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 193/319 (60%), Positives = 238/319 (74%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
            E+A    LRP+ L+E+ GQ +    L +F+ AAK R EALDHVL  GPPGLGKTTLA +
Sbjct: 26  NEEAFERALRPKLLDEYVGQEKVRGQLDIFMTAAKRRREALDHVLLFGPPGLGKTTLAHI 85

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +ARE+GVN R TSGPV+ + GDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+Q
Sbjct: 86  IAREMGVNLRQTSGPVLERPGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDYQ 145

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           +D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY   +L  IV 
Sbjct: 146 IDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTPSELSRIVT 205

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A L    + ++ A EIA RSRGTPRIA RLLRRVRDFAEV     ITR +ADAAL  L
Sbjct: 206 RSAGLLDARIAEDGALEIAKRSRGTPRIANRLLRRVRDFAEVKADGVITRAVADAALAML 265

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D +GFD +D + L  I   F GGPVGI+ ++A + E RD IED++EPY+IQQG++QRT
Sbjct: 266 DVDAVGFDLMDRKLLEAILHKFNGGPVGIDNLAAAIGEERDTIEDVLEPYLIQQGYLQRT 325

Query: 314 PRGRLLMPIAWQHLGIDIP 332
           PRGR+    A+QH G+  P
Sbjct: 326 PRGRVATASAYQHFGLGAP 344


>gi|300705141|ref|YP_003746744.1| ATP-dependent DNA helicase subunit B [Ralstonia solanacearum
           CFBP2957]
 gi|299072805|emb|CBJ44160.1| ATP-dependent DNA helicase, subunit B of RuvABC Holliday junction
           resolvasome [Ralstonia solanacearum CFBP2957]
          Length = 357

 Score =  392 bits (1006), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 193/319 (60%), Positives = 238/319 (74%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
            E+A    LRP+ L+E+ GQ +    L +F+ AAK R EALDHVL  GPPGLGKTTLA +
Sbjct: 26  NEEAFERALRPKLLDEYVGQEKVRGQLDIFMTAAKRRREALDHVLLFGPPGLGKTTLAHI 85

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +ARE+GVN R TSGPV+ + GDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+Q
Sbjct: 86  IAREMGVNLRQTSGPVLERPGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDYQ 145

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           +D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY   +L  IV 
Sbjct: 146 IDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTPSELSRIVT 205

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A L    + ++ A EIA RSRGTPRIA RLLRRVRDFAEV     ITR +ADAAL  L
Sbjct: 206 RSAGLLDARIAEDGALEIAKRSRGTPRIANRLLRRVRDFAEVKADGVITRAVADAALAML 265

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D +GFD +D + L  I   F GGPVGI+ ++A + E RD IED++EPY+IQQG++QRT
Sbjct: 266 DVDAVGFDLMDRKLLEAILHKFNGGPVGIDNLAAAIGEERDTIEDVLEPYLIQQGYLQRT 325

Query: 314 PRGRLLMPIAWQHLGIDIP 332
           PRGR+    A+QH G+  P
Sbjct: 326 PRGRVATASAYQHFGLGAP 344


>gi|300309763|ref|YP_003773855.1| Holliday junction resolvase DNA helicase subunit [Herbaspirillum
           seropedicae SmR1]
 gi|300072548|gb|ADJ61947.1| Holliday junction resolvase, DNA helicase subunit protein
           [Herbaspirillum seropedicae SmR1]
          Length = 351

 Score =  392 bits (1006), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 188/320 (58%), Positives = 243/320 (75%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           + E+A    LRP+ L+E+ GQ +  + L++FI AA+ R E LDH L  GPPGLGKTT+A 
Sbjct: 21  ANEEAIERALRPKQLDEYVGQEKVRAQLEIFISAARKRGEPLDHTLLFGPPGLGKTTMAH 80

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++ARE+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHR+S +VEEILYPA+ED+
Sbjct: 81  IIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRMSPVVEEILYPALEDY 140

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           Q+D+M+GEGP+ARSV+++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY   +L  IV
Sbjct: 141 QIDIMIGEGPAARSVRLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTPPELARIV 200

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R A L    + ++ A EIA RSRGTPRIA RLLRRVRD+AEV     ITRE+ADAAL+ 
Sbjct: 201 TRSAGLLNAPIVEDGALEIARRSRGTPRIANRLLRRVRDYAEVKGQGRITREMADAALVM 260

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D +GFD +D + L  +   FGGGPVG++ ++A + E RD IED++EPY+IQQG++QR
Sbjct: 261 LDVDPVGFDLMDRKLLEAVLFKFGGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGYLQR 320

Query: 313 TPRGRLLMPIAWQHLGIDIP 332
           TPRGR+    A+QH G+  P
Sbjct: 321 TPRGRIATGAAYQHFGVTAP 340


>gi|330721243|gb|EGG99342.1| Holliday junction DNA helicase RuvB [gamma proteobacterium
           IMCC2047]
          Length = 337

 Score =  392 bits (1006), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 188/308 (61%), Positives = 239/308 (77%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP TL E+ GQ      +++FI AA+ RAEALDHVL  GPPGLGKTTLA ++A+E+GV+
Sbjct: 24  IRPSTLSEYVGQDAVKEQMEIFIHAARGRAEALDHVLIFGPPGLGKTTLANIIAQEMGVS 83

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            +STSGPV+ KAGDLAA+LTNLE+ DVLFIDEIHRLS  VEE+LYPAMED+QLD+M+GEG
Sbjct: 84  IKSTSGPVLEKAGDLAAMLTNLEEGDVLFIDEIHRLSPAVEEVLYPAMEDYQLDIMIGEG 143

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+K++L RFTL+ ATTR GLLT+PL+DRFGI  RL FY + DL  IV R   L  +
Sbjct: 144 PAARSIKLDLPRFTLVGATTRAGLLTSPLRDRFGIVQRLEFYNVADLTHIVSRSCGLLSV 203

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            V +E A EIA RSRGTPRIA RLLRRVRD+A+V     I ++IADAAL  L +D +GFD
Sbjct: 204 PVNEEGAAEIARRSRGTPRIANRLLRRVRDYAQVKGDGAIGKDIADAALGMLDVDDVGFD 263

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D R L  +   F GGPVG+++++A +SE RD IED++EPY+IQQG+I RTPRGR++  
Sbjct: 264 NMDRRLLLAMIEKFDGGPVGVDSLAAAISEERDTIEDVLEPYLIQQGYILRTPRGRIVTK 323

Query: 322 IAWQHLGI 329
            A+ H G+
Sbjct: 324 HAYLHFGL 331


>gi|253574941|ref|ZP_04852281.1| Holliday junction DNA helicase RuvB [Paenibacillus sp. oral taxon
           786 str. D14]
 gi|251845987|gb|EES73995.1| Holliday junction DNA helicase RuvB [Paenibacillus sp. oral taxon
           786 str. D14]
          Length = 335

 Score =  392 bits (1006), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 197/334 (58%), Positives = 250/334 (74%), Gaps = 3/334 (0%)

Query: 1   MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M DR  ++S N+  ED  + L LRPR L E+ GQ +   NLK++IEAAK R EALDHVL 
Sbjct: 2   MEDR--IISANLMLEDQAVELSLRPRYLAEYIGQNQIKENLKIYIEAAKMRKEALDHVLL 59

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A ELGVN R+TSGP I + GDLAALLTNL++ DVLFIDEIHRL  
Sbjct: 60  YGPPGLGKTTLANIIANELGVNLRTTSGPAIERPGDLAALLTNLQEGDVLFIDEIHRLHR 119

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEE+LYPAMEDF LD+M+G+GPSARSV+++L  FTL+ ATTR GLL+ PL+DRFG+  R
Sbjct: 120 TVEEVLYPAMEDFALDIMIGKGPSARSVRLDLPPFTLVGATTRAGLLSAPLRDRFGVVSR 179

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY I++L  IV RGA + G+ +  +AA EIA+RSRGTPRIA RLL+RVRD+A+V    
Sbjct: 180 LEFYNIDELSYIVSRGADIFGIEMIGDAATEIALRSRGTPRIANRLLKRVRDYAQVRGDG 239

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT EIA  AL  L +D MG D +D + L  +  +F GGPVG++TI+A + E    IED+
Sbjct: 240 MITTEIAKEALQMLQVDPMGLDLIDHKMLRAMITSFRGGPVGLDTIAATIGEESQTIEDV 299

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            EPY++Q GF+QRTPRGR++ P A+QHLG+ +P 
Sbjct: 300 YEPYLLQIGFLQRTPRGRVVTPAAYQHLGLPMPE 333


>gi|152979456|ref|YP_001345085.1| Holliday junction DNA helicase B [Actinobacillus succinogenes 130Z]
 gi|171704336|sp|A6VQA3|RUVB_ACTSZ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|150841179|gb|ABR75150.1| Holliday junction DNA helicase RuvB [Actinobacillus succinogenes
           130Z]
          Length = 336

 Score =  392 bits (1006), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 189/317 (59%), Positives = 245/317 (77%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           S ++A    +RP+ L+++ GQ +  S +++FI+AAK R +ALDH+L  GPPGLGKTTLA 
Sbjct: 14  SDDEAVDRAIRPKLLQDYVGQPQVRSQMEIFIQAAKLRQDALDHLLIFGPPGLGKTTLAN 73

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS  +EE+LYPAMED+
Sbjct: 74  IVANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDY 133

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  RL FY IEDL +IV
Sbjct: 134 QLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYSIEDLTSIV 193

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R A    L ++D+A+ E+A RSRGTPRIA RLLRRVRD+A+V +   IT+ IA AAL  
Sbjct: 194 MRSAACLNLEISDDASHEVARRSRGTPRIANRLLRRVRDYADVKNNGMITQGIAKAALAM 253

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L ID+ GFD LD + L+ I   F GGPVG++ ++A + E RD IED++EPY+IQQGF+QR
Sbjct: 254 LDIDQAGFDYLDRKLLSSIIERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQR 313

Query: 313 TPRGRLLMPIAWQHLGI 329
           TPRGR+     ++H G+
Sbjct: 314 TPRGRIATSQTYRHFGL 330


>gi|254506091|ref|ZP_05118235.1| Holliday junction DNA helicase RuvB [Vibrio parahaemolyticus 16]
 gi|219550909|gb|EED27890.1| Holliday junction DNA helicase RuvB [Vibrio parahaemolyticus 16]
          Length = 334

 Score =  392 bits (1006), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 190/317 (59%), Positives = 242/317 (76%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           +ED     +RP+ LE++ GQ      +++FI+AA+ R EALDH+L  GPPGLGKTTLA +
Sbjct: 17  EEDVIDRAIRPKKLEDYKGQDHVRDQMEIFIKAAQLREEALDHLLIFGPPGLGKTTLANI 76

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           VA E+GVN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS +VEE+LYPAMED+Q
Sbjct: 77  VANEMGVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQ 136

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           LD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  RL +Y+I DL+ IVQ
Sbjct: 137 LDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGITQRLEYYKIPDLQNIVQ 196

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A   GL++  E A E+A R+RGTPRIA RLLRRVRD+AEV     I  E+AD AL  L
Sbjct: 197 RSADCLGLSMEAEGALEVARRARGTPRIANRLLRRVRDYAEVKGNGHICAEVADKALNML 256

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D  GFD +D + L  I   FGGGPVG++ ++A + E +D IED++EPY+IQQG++QRT
Sbjct: 257 DVDAQGFDYMDRKLLLAIMEKFGGGPVGLDNMAAAIGEEKDTIEDVLEPYLIQQGYLQRT 316

Query: 314 PRGRLLMPIAWQHLGID 330
           PRGR+    A+ H GI+
Sbjct: 317 PRGRIATDRAYLHFGIE 333


>gi|114330311|ref|YP_746533.1| Holliday junction DNA helicase B [Nitrosomonas eutropha C91]
 gi|122314643|sp|Q0AJA3|RUVB_NITEC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|114307325|gb|ABI58568.1| Holliday junction DNA helicase RuvB [Nitrosomonas eutropha C91]
          Length = 346

 Score =  392 bits (1006), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 195/317 (61%), Positives = 240/317 (75%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           SQE+     LRP  L+++ GQ +    LK+FIEAA+ R EALDHVL  GPPGLGKTTLA 
Sbjct: 15  SQEEVIERALRPVQLDDYVGQEKIREQLKIFIEAARQRQEALDHVLLFGPPGLGKTTLAH 74

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++ARE+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPAMED+
Sbjct: 75  IIAREMGVNLRHTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPAMEDY 134

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           QLD+M+GEG +ARSVKI+L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  ++L  IV
Sbjct: 135 QLDIMIGEGVAARSVKIDLPSFTLVGATTRAGMLTNPLRDRFGIVSRLEFYTSDELSKIV 194

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R A L  + +T + A EIA RSRGTPRIA RLLRRVRDFAEV     I R++ADAAL  
Sbjct: 195 TRSAGLLDVDITADGAREIACRSRGTPRIANRLLRRVRDFAEVRANGRIDRQVADAALQM 254

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D  G D LD + L  +   FGGGPVG++ ++A ++E RD IE+++EPY+IQQGF+QR
Sbjct: 255 LDVDAAGLDVLDRKLLLAVLEKFGGGPVGVDNLAAAINEERDTIEEVLEPYLIQQGFLQR 314

Query: 313 TPRGRLLMPIAWQHLGI 329
           TPRGR+   + +QH  I
Sbjct: 315 TPRGRMATTMTYQHFDI 331


>gi|221134419|ref|ZP_03560724.1| Holliday junction DNA helicase RuvB [Glaciecola sp. HTCC2999]
          Length = 337

 Score =  392 bits (1006), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 187/329 (56%), Positives = 247/329 (75%), Gaps = 1/329 (0%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+  +   +D  +   +RP+TL ++TGQ   C  + +FIEAA+ R +ALDHVL 
Sbjct: 1   MIEEDRLIQASAKNDDEAVDRAIRPKTLADYTGQDHVCEQMSIFIEAARKRTDALDHVLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A E+ VN ++TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIIANEMDVNIKTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+K++L+ FTL+ ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKLDLAPFTLVGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY IEDL  I+ R AK   + +  E A EIA R+RGTPRIA RLLRRVRD+AE+    
Sbjct: 181 LEFYNIEDLTDIIMRSAKYLNVEMVTEGALEIAKRARGTPRIANRLLRRVRDYAEIKSNG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           T+   IA  AL  L +DK+GFD +D + L  I   F GGPVG++ ++A + E ++ IED+
Sbjct: 241 TVDEHIAALALDMLDVDKVGFDYMDRKLLEAIIDKFDGGPVGLDNLAAAIGEEKETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
           IEP++IQQGF+QRTPRGR+    A++HLG
Sbjct: 301 IEPFLIQQGFLQRTPRGRIASNRAYEHLG 329


>gi|319941759|ref|ZP_08016081.1| Holliday junction ATP-dependent DNA helicase ruvB [Sutterella
           wadsworthensis 3_1_45B]
 gi|319804692|gb|EFW01559.1| Holliday junction ATP-dependent DNA helicase ruvB [Sutterella
           wadsworthensis 3_1_45B]
          Length = 350

 Score =  391 bits (1005), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 191/322 (59%), Positives = 244/322 (75%), Gaps = 1/322 (0%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           N ++E+ D +L RP  L ++ GQ      L++FIEAA+ R + LDH+L  GPPGLGKTTL
Sbjct: 16  NPNEENVDRAL-RPTRLADYVGQKAVREQLQIFIEAARRRGDPLDHLLLFGPPGLGKTTL 74

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           A +VA E+GVN R TSGPV+ + GDLAA+LTNLE  DVLFIDEIHRLS +VEEILYPA+E
Sbjct: 75  AHIVAEEMGVNLRQTSGPVLERPGDLAAILTNLEKNDVLFIDEIHRLSPVVEEILYPALE 134

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           D+Q+D+M+GEGP+ARS+K++L  FTLI ATTR G LTNPL+ RFGI  +L FY  E+L T
Sbjct: 135 DYQIDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTNPLRARFGIVNQLQFYTTEELIT 194

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           IV+R A+L G+++  E A EIA RSRGTPR+A RLLRRVRD+AEV H  TITRE+A AAL
Sbjct: 195 IVRRSARLLGVSIDPEGAAEIASRSRGTPRVANRLLRRVRDYAEVRHDGTITREVASAAL 254

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
             L +D +G D +D R+L  I   F GGPVGI+ ++A + E RD +ED++EPY+IQQGF+
Sbjct: 255 TMLDVDPVGLDFIDRRFLLTILEKFSGGPVGIDNLAAAIGEDRDTLEDVVEPYLIQQGFL 314

Query: 311 QRTPRGRLLMPIAWQHLGIDIP 332
           QRTPRGR+    AW+H  +  P
Sbjct: 315 QRTPRGRMAAHRAWEHFKLTPP 336


>gi|88861318|ref|ZP_01135949.1| Holliday junction helicase, subunit B [Pseudoalteromonas tunicata
           D2]
 gi|88816697|gb|EAR26521.1| Holliday junction helicase, subunit B [Pseudoalteromonas tunicata
           D2]
          Length = 335

 Score =  391 bits (1005), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 190/318 (59%), Positives = 241/318 (75%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
            ED+    +RP+ L ++TGQ      +++FI+AA +R EALDH+L  GPPGLGKTTLA +
Sbjct: 15  NEDSIDRAIRPKMLADYTGQPHVKGQMEIFIQAANSRQEALDHLLIFGPPGLGKTTLANI 74

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           VA ELGV+ ++TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS  +EEILYPAMED+Q
Sbjct: 75  VANELGVSIKTTSGPVLEKAGDLAAMLTNLEAHDVLFIDEIHRLSPHIEEILYPAMEDYQ 134

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           LD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  RL FY + DL +IV+
Sbjct: 135 LDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYSVADLSSIVK 194

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A    L + DE A EIAMRSRGTPRIA RLLRRVRD+A+V    T+ + IA  AL  +
Sbjct: 195 RSAHYLNLQMDDEGANEIAMRSRGTPRIANRLLRRVRDYAQVKADGTVNQHIASLALDMV 254

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +DK GFD +D +YL  +   F GGPVG++ I+A + E R+ IED+IEPY+IQQGFIQRT
Sbjct: 255 DVDKQGFDFMDRKYLLAVIEKFSGGPVGLDNIAAAIGEERETIEDVIEPYLIQQGFIQRT 314

Query: 314 PRGRLLMPIAWQHLGIDI 331
           PRGR++   A+ H G+ I
Sbjct: 315 PRGRIVSDRAYLHFGLMI 332


>gi|189425232|ref|YP_001952409.1| Holliday junction DNA helicase RuvB [Geobacter lovleyi SZ]
 gi|238692114|sp|B3E468|RUVB_GEOLS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|189421491|gb|ACD95889.1| Holliday junction DNA helicase RuvB [Geobacter lovleyi SZ]
          Length = 338

 Score =  391 bits (1005), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 196/332 (59%), Positives = 246/332 (74%), Gaps = 5/332 (1%)

Query: 8   LSRNVSQEDADISL-----LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           + R ++ E  D  L     LRPRTL+++ GQ +   NLK+FI+AAK R+EALDHVL  GP
Sbjct: 1   MERAITPEKRDDDLQFDATLRPRTLQDYIGQEKIRENLKLFIDAAKGRSEALDHVLLYGP 60

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++A E+GVN +STSGPVI + GDLAA+LTNLE  DVLFIDEIHRLS +VE
Sbjct: 61  PGLGKTTLANIIACEMGVNIKSTSGPVIERPGDLAAILTNLEPHDVLFIDEIHRLSHVVE 120

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILYPAMEDFQLD+++G+GPSARS+K++L RFTL+ ATTR GLL++PL+DRFG+  RL F
Sbjct: 121 EILYPAMEDFQLDIIIGQGPSARSIKLDLPRFTLVGATTRAGLLSSPLRDRFGVISRLEF 180

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  ++L  IV R A++ G+A+  E A E+A RSRGTPRIA RLLRRVRD+A+V     IT
Sbjct: 181 YTHDELAFIVTRSARILGMAIDREGALELARRSRGTPRIANRLLRRVRDYAQVRADGAIT 240

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             +    L  L ID+MGFDQ+D   L  I   FGGGPVG++TI A + E  D IED+ EP
Sbjct: 241 LSVVQETLRLLEIDEMGFDQMDRMILLTIIDKFGGGPVGLDTIGAAIGEESDTIEDVYEP 300

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           ++IQ GF+ RTPRGR+  P A+QH G   P R
Sbjct: 301 FLIQNGFLNRTPRGRVATPAAYQHFGRLTPER 332


>gi|226329885|ref|ZP_03805403.1| hypothetical protein PROPEN_03798 [Proteus penneri ATCC 35198]
 gi|225200680|gb|EEG83034.1| hypothetical protein PROPEN_03798 [Proteus penneri ATCC 35198]
          Length = 336

 Score =  391 bits (1005), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 193/330 (58%), Positives = 247/330 (74%), Gaps = 2/330 (0%)

Query: 1   MMDREGLLSRNVSQEDADI--SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M++ + L+S  + Q + +I    +RP++L E+ GQ +    +++FI+AAK R +ALDH+L
Sbjct: 1   MIEADRLISAEIQQPEEEIIDRAIRPKSLAEYVGQPQVREQMEIFIQAAKLRHDALDHLL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA ++A E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS
Sbjct: 61  IFGPPGLGKTTLANIIANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLS 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            +VEEILYPAMED+QLD+M+GEGP+ARS+KI+L  FTL+ ATTR G LT+PL+DRFGI  
Sbjct: 121 PVVEEILYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLVGATTRAGSLTSPLRDRFGIVQ 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           RL FY ++DL+ IV R A   GL +TDE A +IAMRSRGTPRI  RLLRRVRDFA+V   
Sbjct: 181 RLEFYHVDDLQHIVSRSASFMGLEMTDEGARQIAMRSRGTPRITNRLLRRVRDFAQVKGN 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             I  EIA  AL  L +D  GFD LD + L  I   F GGPVG++ ++A + E R+ IED
Sbjct: 241 GAIDEEIASKALDMLNVDAAGFDYLDRKLLFAIIDKFMGGPVGLDNLAAAIGEERETIED 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
           ++EPY+IQQGFIQRTPRGR+    A++H  
Sbjct: 301 VLEPYLIQQGFIQRTPRGRVATNHAYRHFN 330


>gi|253989948|ref|YP_003041304.1| Holliday junction DNA helicase RuvB [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|211639071|emb|CAR67684.1| ruvb protein, holliday junction helicase subunit a (ec 3.6.1.-)
           [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253781398|emb|CAQ84561.1| RuvB protein, holliday junction helicase subunit A [Photorhabdus
           asymbiotica]
          Length = 335

 Score =  391 bits (1005), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 191/330 (57%), Positives = 250/330 (75%), Gaps = 1/330 (0%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S  +  +D  I   +RP+ L E+ GQ + C  +++FI+AA+ R +ALDH+L 
Sbjct: 1   MIEADRLVSAEILPDDEAIDRAIRPKLLSEYVGQPQVCEQMEIFIQAARQRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY ++DL++IV R A+  G+ +TD+ A ++AMRSRGTPRI  RLLRRVRDFA+V    
Sbjct: 181 LEFYNVDDLQSIVSRSARFMGVDITDDGARQVAMRSRGTPRITNRLLRRVRDFAQVKGDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  +IA  AL  L++D  GFD LD + L  I   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 AIDGDIATRALDMLSVDSAGFDYLDRKLLIAIIDKFMGGPVGVDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           +EP++IQQGFIQRT RGR+    A++H GI
Sbjct: 301 LEPFLIQQGFIQRTSRGRIATNHAYRHFGI 330


>gi|296112685|ref|YP_003626623.1| holliday junction DNA helicase RuvB [Moraxella catarrhalis RH4]
 gi|295920379|gb|ADG60730.1| holliday junction DNA helicase RuvB [Moraxella catarrhalis RH4]
 gi|326560942|gb|EGE11307.1| Holliday junction DNA helicase RuvB [Moraxella catarrhalis 7169]
 gi|326563933|gb|EGE14183.1| Holliday junction DNA helicase RuvB [Moraxella catarrhalis 12P80B1]
 gi|326567325|gb|EGE17440.1| Holliday junction DNA helicase RuvB [Moraxella catarrhalis BC1]
          Length = 329

 Score =  391 bits (1004), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 190/319 (59%), Positives = 246/319 (77%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L+  N  ++D     +RP +L+E+ GQ +    +KVFI AA+AR EALDH L  GPPGLG
Sbjct: 6   LIDPNPKKDDTADRAIRPSSLDEYIGQPKVREQMKVFIPAARARGEALDHTLIFGPPGLG 65

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTTLA ++A+E+G N RSTSGPV+ +AGDLAA+LTNLE  DVLFIDEIHRLS ++EEILY
Sbjct: 66  KTTLANIIAKEMGGNLRSTSGPVLERAGDLAAILTNLEAGDVLFIDEIHRLSPVIEEILY 125

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           PAMEDFQLD+M+GEGP+ARS+K++L  FTL+AATTR GLL+ PL DRFGI  RL FY +E
Sbjct: 126 PAMEDFQLDIMIGEGPAARSIKLDLPPFTLVAATTRAGLLSAPLFDRFGIVQRLEFYNVE 185

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           DL TIV+R A+L G+ + D  A E+A RSRGTPRIA RLLRRVRD+AE+      T +IA
Sbjct: 186 DLTTIVKRSARLLGVLMDDGGALEVAHRSRGTPRIANRLLRRVRDYAEIKGDGVATADIA 245

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
            AAL  LA+DK G DQLD RYL+++++ F GGP G+E ++A ++E R  +ED+IEPY++Q
Sbjct: 246 SAALDMLAVDKQGLDQLDRRYLSVLSQRFHGGPAGVEALAAAMAEDRGTLEDVIEPYLLQ 305

Query: 307 QGFIQRTPRGRLLMPIAWQ 325
           QG+IQRT +GR++    +Q
Sbjct: 306 QGYIQRTSKGRIISDKVFQ 324


>gi|332305759|ref|YP_004433610.1| Holliday junction DNA helicase RuvB [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332173088|gb|AEE22342.1| Holliday junction DNA helicase RuvB [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 335

 Score =  391 bits (1004), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 191/331 (57%), Positives = 249/331 (75%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+     +ED  I   +RP+ L ++TGQ   C  + +FI AA+ R++ALDH+L 
Sbjct: 1   MIEADRLIQPTAIREDEVIDRAIRPKMLADYTGQDHVCEQMDIFIRAARKRSDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GV+ ++TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVSIKTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPAMED+QLD+M+GEGP+ARS+K+ L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKLELPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY I+DL  IV+R A+   L + ++ A EIA RSRGTPRI+ RLLRRVRD+AE+    
Sbjct: 181 LEFYNIKDLTQIVKRSAEFLALDLAEDGAIEIAKRSRGTPRISNRLLRRVRDYAEIKSDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I+ ++A AAL  L +DK GFD +D + LT I   F GGPVG++ ++A + E RD IED+
Sbjct: 241 KISSQVASAALDMLDVDKEGFDYMDRKLLTTIIEKFMGGPVGLDNLAAAIGEERDTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           IEP++IQQGF+QRTPRGR++   A+ H G D
Sbjct: 301 IEPFLIQQGFLQRTPRGRIVSQRAYLHFGFD 331


>gi|221064963|ref|ZP_03541068.1| Holliday junction DNA helicase RuvB [Comamonas testosteroni KF-1]
 gi|220709986|gb|EED65354.1| Holliday junction DNA helicase RuvB [Comamonas testosteroni KF-1]
          Length = 365

 Score =  391 bits (1004), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 190/311 (61%), Positives = 235/311 (75%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L+E+ GQ +A   L++FI AAK R+EALDHVL  GPPGLGKTTL+ ++A ELGVN
Sbjct: 49  LRPKQLDEYVGQAKAREQLEIFISAAKKRSEALDHVLLFGPPGLGKTTLSHIIAAELGVN 108

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGPV+ K  DLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+Q+D+M+GEG
Sbjct: 109 LRQTSGPVLEKPKDLAALLTNLEPNDVLFIDEIHRLSPVVEEILYPALEDYQIDIMIGEG 168

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  E+L  IV+R A L   
Sbjct: 169 PAARSIKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYSSEELSRIVKRSAGLLNA 228

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + +E   EIA RSRGTPRIA RLLRRVRD+A+V     ITREIAD AL  L +D  GFD
Sbjct: 229 PIDEEGCFEIARRSRGTPRIANRLLRRVRDYADVKGDGRITREIADKALAMLDVDPQGFD 288

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   F GGPVG++ I+A + E    IED+IEPY+IQQGF+QRTPRGR+   
Sbjct: 289 IMDRKLLEAVVHRFDGGPVGLDNIAASIGEESGTIEDVIEPYLIQQGFLQRTPRGRMATQ 348

Query: 322 IAWQHLGIDIP 332
            A++HLG+  P
Sbjct: 349 AAYRHLGLQAP 359


>gi|17545219|ref|NP_518621.1| Holliday junction DNA helicase B [Ralstonia solanacearum GMI1000]
 gi|20140050|sp|Q8Y236|RUVB_RALSO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|17427510|emb|CAD14028.1| probable holliday junction dna helicase ruvb protein [Ralstonia
           solanacearum GMI1000]
          Length = 357

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 192/319 (60%), Positives = 238/319 (74%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
            E+A    LRP+ L+E+ GQ +    L +F+ AAK R EALDHVL  GPPGLGKTTLA +
Sbjct: 26  NEEAFERALRPKLLDEYVGQEKVRGQLDIFMTAAKKRREALDHVLLFGPPGLGKTTLAHI 85

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +ARE+GVN R TSGPV+ + GDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+Q
Sbjct: 86  IAREMGVNLRQTSGPVLERPGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDYQ 145

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           +D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY   +L  IV 
Sbjct: 146 IDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTPTELARIVT 205

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A L    + ++ A EIA RSRGTPRIA RLLRRVRD+AEV     ITR +ADAAL  L
Sbjct: 206 RSAGLLDARIAEDGALEIAKRSRGTPRIANRLLRRVRDYAEVKADGVITRAVADAALAML 265

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D +GFD +D + L  I   F GGPVGI+ ++A + E RD IED++EPY+IQQG++QRT
Sbjct: 266 DVDAVGFDLMDRKLLEAILHKFNGGPVGIDNLAAAIGEERDTIEDVLEPYLIQQGYLQRT 325

Query: 314 PRGRLLMPIAWQHLGIDIP 332
           PRGR+    A+QH G+  P
Sbjct: 326 PRGRVATASAYQHFGLGAP 344


>gi|322832436|ref|YP_004212463.1| Holliday junction DNA helicase RuvB [Rahnella sp. Y9602]
 gi|321167637|gb|ADW73336.1| Holliday junction DNA helicase RuvB [Rahnella sp. Y9602]
          Length = 335

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 195/330 (59%), Positives = 250/330 (75%), Gaps = 1/330 (0%)

Query: 1   MMDREGLLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S  V S+E+     +RP+ L E+ GQ    S +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRLISPEVFSEEEVIDRAIRPKLLSEYVGQPHVRSQMEIFIQAAKQRKDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IV R A   GL +++E A +IA RSRGTPRIA RLLRRVRDFAEV    
Sbjct: 181 LEFYQVADLQHIVGRSASCLGLELSEEGAHQIARRSRGTPRIANRLLRRVRDFAEVKGDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           TI  ++A+ AL  L +D  GFD +D + L  I   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 TINGDVANGALDMLDVDAEGFDYMDRKLLLAIIDKFSGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           IEP++IQQGFIQRTPRGR+    A++H GI
Sbjct: 301 IEPFLIQQGFIQRTPRGRMATNHAYKHFGI 330


>gi|148653254|ref|YP_001280347.1| Holliday junction DNA helicase RuvB [Psychrobacter sp. PRwf-1]
 gi|172048527|sp|A5WFF6|RUVB_PSYWF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|148572338|gb|ABQ94397.1| Holliday junction DNA helicase subunit RuvB [Psychrobacter sp.
           PRwf-1]
          Length = 325

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 191/306 (62%), Positives = 237/306 (77%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP TL E+ GQ      ++VFIEAA+ R EALDH L  GPPGLGKTTLA ++ARE+G N
Sbjct: 20  IRPSTLAEYIGQPVVREQMEVFIEAARRRNEALDHTLIFGPPGLGKTTLANIIAREMGGN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            RSTSGPV+ +AGDLAA+LTNLE+ DVLFIDEIHRLS ++EEILYPAMEDFQLD+M+GEG
Sbjct: 80  LRSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPVIEEILYPAMEDFQLDIMIGEG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+K++L  FTL+AATTR GLLT+PL+DRFGI  RL FY IEDL TIV R A+L  +
Sbjct: 140 PAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRLEFYNIEDLTTIVSRSARLMNV 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T E A E+A RSRGTPRIA RLLRRVRD+A+V     +T EIAD+AL  LA+D+ G D
Sbjct: 200 VMTPEGAVEVARRSRGTPRIANRLLRRVRDYAQVKSNGEVTGEIADSALDMLAVDRRGLD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            LD RY+ M+   F  GP G+E I+A ++E R  +ED+IEPY+IQQG++ RT RGR+L  
Sbjct: 260 HLDRRYIEMVHARFDNGPAGVEAIAAAMAEDRGTLEDVIEPYLIQQGYVLRTARGRVLTQ 319

Query: 322 IAWQHL 327
           +A   L
Sbjct: 320 MAIDQL 325


>gi|239995978|ref|ZP_04716502.1| Holliday junction DNA helicase RuvB [Alteromonas macleodii ATCC
           27126]
          Length = 334

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 190/330 (57%), Positives = 248/330 (75%), Gaps = 1/330 (0%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L++   S ED  I   +RP+ LE++TGQ   C  +++FI+AA+ R +ALDH+L 
Sbjct: 1   MIEADRLITPEASTEDEVIDRAIRPKMLEDYTGQPHVCEQMEIFIQAARNRDDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN ++TSGPV+ KAGDLAALLTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNIKTTSGPVLEKAGDLAALLTNLERNDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY ++DL +IV R A    L + DE A E+A RSRGTPRIA RLLRRVRD+AE+    
Sbjct: 181 LEFYNVKDLTSIVARSASYLNLDMNDEGAQEVARRSRGTPRIANRLLRRVRDYAEIKADG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           T+  + A  AL  L +DK GFD +D + LT I   F GGPVG++ ++A + E ++ IED+
Sbjct: 241 TVGADTASKALDMLDVDKEGFDYMDRKLLTAIIEKFDGGPVGLDNLAAAIGEEKETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           IEP++IQQGF+QRTPRGR++   A+ H G 
Sbjct: 301 IEPFLIQQGFLQRTPRGRIVSQRAYLHFGF 330


>gi|315634722|ref|ZP_07890006.1| crossover junction ATP-dependent DNA helicase RuvB [Aggregatibacter
           segnis ATCC 33393]
 gi|315476670|gb|EFU67418.1| crossover junction ATP-dependent DNA helicase RuvB [Aggregatibacter
           segnis ATCC 33393]
          Length = 337

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 192/331 (58%), Positives = 246/331 (74%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + ++S  V   ED     +RP+ L ++ GQ + C  +++FI+AA+ R +ALDH+L 
Sbjct: 1   MIEADRIISATVKLDEDVIDRAIRPKLLADYVGQPQVCEQMEIFIKAAQLRQDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            +EE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 AIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY + DL +IV R A    L + D AA EIA RSRGTPRIA RLLRRVRD+A+V +  
Sbjct: 181 LEFYSVPDLTSIVSRSAVCLQLKIDDSAAYEIARRSRGTPRIANRLLRRVRDYADVRNNG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT  IA AAL  L ID  GFD LD + LT +   F GGPVG++ ++A + E RD IED+
Sbjct: 241 VITETIAKAALSMLDIDDAGFDYLDRKLLTAVLERFDGGPVGLDNLAAAIGEERDTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           +EPY+IQQGF+QRTPRGR+     ++H GI+
Sbjct: 301 LEPYLIQQGFLQRTPRGRIATSTTYRHFGIE 331


>gi|152979831|ref|YP_001352001.1| Holliday junction DNA helicase RuvB [Janthinobacterium sp.
           Marseille]
 gi|172049085|sp|A6SUQ4|RUVB_JANMA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|151279908|gb|ABR88318.1| holliday junction DNA helicase [Janthinobacterium sp. Marseille]
          Length = 352

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 188/321 (58%), Positives = 242/321 (75%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           + E+A    LRP+ L+E+ GQ +    L++FI AA+ R EALDH L  GPPGLGKTTLA 
Sbjct: 21  ANEEAIERALRPKQLDEYVGQEKIRGQLEIFITAARQRHEALDHTLLFGPPGLGKTTLAH 80

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++ARE+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+
Sbjct: 81  IIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDY 140

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           Q+D+M+GEGP+ARSV+++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY   +L  IV
Sbjct: 141 QIDIMIGEGPAARSVRLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTPLELTKIV 200

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R + L    + ++ A EIA RSRGTPRIA RLLRRVRD+AEV     IT+ +ADAAL+ 
Sbjct: 201 TRSSALLNAPIDEDGAFEIAKRSRGTPRIANRLLRRVRDYAEVKGNGKITKAMADAALVM 260

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D +GFD +D + L  +   F GGPVG++ ++A + E RD IED++EPY+IQQGF+QR
Sbjct: 261 LDVDPVGFDLMDRKLLEAVLFKFNGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQR 320

Query: 313 TPRGRLLMPIAWQHLGIDIPH 333
           TPRGR+  P+A+ H G+  P 
Sbjct: 321 TPRGRIATPVAYAHFGVTAPQ 341


>gi|78048833|ref|YP_365008.1| Holliday junction DNA helicase RuvB [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|97190443|sp|Q3BQF5|RUVB_XANC5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|78037263|emb|CAJ25008.1| Holliday junction DNA helicase RuvB [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 346

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 193/332 (58%), Positives = 249/332 (75%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M ++  + S +  ++DA  + +RP+ L ++ GQ      ++++I+AAKAR EA+DHVL  
Sbjct: 1   MTEQRIIASSSTREDDAADASIRPKRLADYLGQQPVREQMEIYIQAAKARGEAMDHVLIF 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTL+ V+A ELGV+ R TSGPVI KAGDLAALLTNL+  DVLFIDEIHRLS +
Sbjct: 61  GPPGLGKTTLSHVIANELGVSLRVTSGPVIEKAGDLAALLTNLQPHDVLFIDEIHRLSPV 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDFQ+D+M+G+GP+ARS+KI+L  FTLI ATTR GLLT PL+DRFGI  RL
Sbjct: 121 VEEVLYPAMEDFQIDIMIGDGPAARSIKIDLPPFTLIGATTRAGLLTAPLRDRFGIVQRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  ++L  IV R A + G+  T E A EIA R+RGTPRIA RLLRRVRD+A+V  A  
Sbjct: 181 EFYSPQELTRIVSRSAAILGIDCTPEGAAEIARRARGTPRIANRLLRRVRDYAQVKAAGH 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I   +A AA+  L +D  GFD+LD R L  I  +F GGPVG+E+++A LSE R  +ED+I
Sbjct: 241 IDLPVAQAAMQMLKVDPEGFDELDRRMLRTIVEHFDGGPVGVESLAASLSEERGTLEDVI 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EPY+IQQGF+ RT RGR++ P A+ HLG+ +P
Sbjct: 301 EPYLIQQGFLIRTARGRMVTPKAYLHLGLKVP 332


>gi|114563351|ref|YP_750864.1| Holliday junction DNA helicase B [Shewanella frigidimarina NCIMB
           400]
 gi|122299599|sp|Q081N9|RUVB_SHEFN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|114334644|gb|ABI72026.1| Holliday junction DNA helicase RuvB [Shewanella frigidimarina NCIMB
           400]
          Length = 336

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 194/335 (57%), Positives = 251/335 (74%), Gaps = 1/335 (0%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+   V  +D  I   +RP+ L+E+TGQ +  + LKVFI+AA  R EALDH+L 
Sbjct: 1   MIEADRLIQPQVQGQDELIDRAMRPKMLDEYTGQDDTRAQLKVFIQAAINRREALDHMLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN +STSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLAMIVANEMGVNIKSTSGPVLEKAGDLAALLTNLEEGDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPAMED+QLD+M+G+GP+ARS+K++L  FTLI ATTR G LT+PL+ RFGIP+R
Sbjct: 121 VVEEILYPAMEDYQLDIMIGDGPAARSIKLDLPPFTLIGATTRAGALTSPLRARFGIPLR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY + DL TIV R A +  L + ++ A EIA RSRGTPRIA RLLRRVRD+AEV H  
Sbjct: 181 LEFYNVADLTTIVTRSANVMNLEIDEQGAIEIAKRSRGTPRIANRLLRRVRDYAEVKHDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            +++ +A+ AL  L +D  GFD LD + L  I   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 KVSQTVAEYALDLLDVDDQGFDYLDRKLLLAIIDKFMGGPVGLDNLAAAIGEDRETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           +EP++IQQGFIQRTPRGR+    A+ H  +  P +
Sbjct: 301 LEPFLIQQGFIQRTPRGRIASQRAYDHFSLVRPEK 335


>gi|299067940|emb|CBJ39154.1| ATP-dependent DNA helicase, subunit B of RuvABC Holliday junction
           resolvasome [Ralstonia solanacearum CMR15]
          Length = 357

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 192/319 (60%), Positives = 238/319 (74%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
            E+A    LRP+ L+E+ GQ +    L +F+ AAK R EALDHVL  GPPGLGKTTLA +
Sbjct: 26  NEEAFERALRPKLLDEYVGQEKVRGQLDIFMTAAKRRREALDHVLLFGPPGLGKTTLAHI 85

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +ARE+GVN R TSGPV+ + GDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+Q
Sbjct: 86  IAREMGVNLRQTSGPVLERPGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDYQ 145

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           +D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY   +L  IV 
Sbjct: 146 IDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTPTELARIVT 205

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A L    + ++ A EIA RSRGTPRIA RLLRRVRD+AEV     ITR +ADAAL  L
Sbjct: 206 RSAGLLDARIAEDGALEIAKRSRGTPRIANRLLRRVRDYAEVKADGVITRAVADAALAML 265

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D +GFD +D + L  I   F GGPVGI+ ++A + E RD IED++EPY+IQQG++QRT
Sbjct: 266 DVDAVGFDLMDRKLLEAILHKFNGGPVGIDNLAAAIGEERDTIEDVLEPYLIQQGYLQRT 325

Query: 314 PRGRLLMPIAWQHLGIDIP 332
           PRGR+    A+QH G+  P
Sbjct: 326 PRGRVATASAYQHFGLGAP 344


>gi|261364994|ref|ZP_05977877.1| holliday junction DNA helicase RuvB [Neisseria mucosa ATCC 25996]
 gi|288566579|gb|EFC88139.1| holliday junction DNA helicase RuvB [Neisseria mucosa ATCC 25996]
          Length = 343

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 196/319 (61%), Positives = 243/319 (76%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           SQE+     LRP+TL+++ GQ +A   L +FI+AAK R EALDH L  GPPGLGKTTLA 
Sbjct: 23  SQEELLERALRPKTLDDYIGQDKAKEQLAIFIQAAKKRGEALDHTLLFGPPGLGKTTLAH 82

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++A+ELGVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+
Sbjct: 83  IIAKELGVNLRQTSGPVLERAGDLAALLTNLEPHDVLFIDEIHRLSPVVEEILYPALEDY 142

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           QLD+M+GEGP+ARSVKI+L  FTL+ ATTR G+LTNPL+DRFGI  RL FY+ +DL TIV
Sbjct: 143 QLDIMIGEGPAARSVKIDLPPFTLVGATTRAGMLTNPLRDRFGIVARLEFYQNQDLATIV 202

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R A+L  L + DE A E+A RSRGTPRIA RLLRRVRDFA+V +   I   +ADAAL  
Sbjct: 203 SRSAQLLQLDMGDEGAMEVAKRSRGTPRIANRLLRRVRDFADVKNNGVIDAAVADAALSM 262

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D  G D +D ++L  I   F GGPVG++ ++A + E  D IED+IEPY+IQQGF+QR
Sbjct: 263 LDVDAQGLDVMDRKFLEAILHKFSGGPVGLDNVAAAIGESTDTIEDVIEPYLIQQGFLQR 322

Query: 313 TPRGRLLMPIAWQHLGIDI 331
           TPRGR+    A+ H G+ +
Sbjct: 323 TPRGRMATERAYLHFGLKM 341


>gi|109899251|ref|YP_662506.1| Holliday junction DNA helicase B [Pseudoalteromonas atlantica T6c]
 gi|123064361|sp|Q15RN6|RUVB_PSEA6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|109701532|gb|ABG41452.1| Holliday junction DNA helicase RuvB [Pseudoalteromonas atlantica
           T6c]
          Length = 335

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 192/331 (58%), Positives = 249/331 (75%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+     +ED  I   +RP+ L ++TGQ   C  + +FI+AA+ R++ALDH+L 
Sbjct: 1   MIEADRLIQPTALREDEVIDRAIRPKMLADYTGQDHVCEQMDIFIQAARKRSDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GV+ ++TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVSIKTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPAMED+QLD+M+GEGP+ARS+K+ L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKLELPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY I+DL  IV+R A    L + +E A EIA RSRGTPRI+ RLLRRVRD+AE+    
Sbjct: 181 LEFYNIKDLTQIVKRSAHFLELNLDEEGAMEIAKRSRGTPRISNRLLRRVRDYAEIKANG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I+ ++A AAL  L +DK GFD +D + LT I   F GGPVG++ ++A + E RD IED+
Sbjct: 241 EISSDVASAALDMLDVDKEGFDYMDRKLLTTIIDKFMGGPVGLDNLAAAIGEERDTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           IEP++IQQGF+QRTPRGR++   A+ H G D
Sbjct: 301 IEPFLIQQGFLQRTPRGRIVSQRAYLHFGYD 331


>gi|296313653|ref|ZP_06863594.1| holliday junction DNA helicase RuvB [Neisseria polysaccharea ATCC
           43768]
 gi|296839793|gb|EFH23731.1| holliday junction DNA helicase RuvB [Neisseria polysaccharea ATCC
           43768]
          Length = 343

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 196/319 (61%), Positives = 244/319 (76%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           SQE+     LRP+TL+++ GQ +A   L +FI+AAK R EALDH L  GPPGLGKTTLA 
Sbjct: 23  SQEELLERALRPKTLDDYIGQDKAKEQLAIFIQAAKKRGEALDHTLLFGPPGLGKTTLAH 82

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++A+ELGVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+
Sbjct: 83  IIAKELGVNLRQTSGPVLERAGDLAALLTNLEPHDVLFIDEIHRLSPVVEEILYPALEDY 142

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           QLD+M+GEGP+ARSVKI+L  FTL+ ATTR G+LTNPL+DRFGI  RL FY+ +DL TIV
Sbjct: 143 QLDIMIGEGPAARSVKIDLPPFTLVGATTRAGMLTNPLRDRFGIVARLEFYQNQDLATIV 202

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R A+L  L + +E A E+A RSRGTPRIA RLLRRVRDFA+V +   I   +ADAAL  
Sbjct: 203 SRSAQLLQLDMGEEGAMEVAKRSRGTPRIANRLLRRVRDFADVKNNGVIDAAVADAALSM 262

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D  G D +D ++L  I   FGGGPVG++ ++A + E  D IED+IEPY+IQQGF+QR
Sbjct: 263 LDVDAQGLDVMDRKFLEAILHKFGGGPVGLDNVAAAIGESTDTIEDVIEPYLIQQGFLQR 322

Query: 313 TPRGRLLMPIAWQHLGIDI 331
           TPRGR+    A+ H G+ +
Sbjct: 323 TPRGRMATERAYLHFGLPV 341


>gi|261252502|ref|ZP_05945075.1| holliday junction DNA helicase RuvB [Vibrio orientalis CIP 102891]
 gi|260935893|gb|EEX91882.1| holliday junction DNA helicase RuvB [Vibrio orientalis CIP 102891]
          Length = 334

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 189/318 (59%), Positives = 241/318 (75%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
            +ED     +RP+ L+++ GQ      +++FI+AA+ R EALDH+L  GPPGLGKTTLA 
Sbjct: 16  KEEDVIDRAIRPKKLDDYKGQDHVRGQMEIFIKAAQLRNEALDHLLIFGPPGLGKTTLAN 75

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           +VA E+ VN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS +VEE+LYPAMED+
Sbjct: 76  IVANEMDVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDY 135

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  RL +Y+I DL+ IV
Sbjct: 136 QLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGITQRLEYYKIPDLQNIV 195

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           QR A   GL++  E A E+A R+RGTPRIA RLLRRVRD+AEV     I  E+AD AL  
Sbjct: 196 QRSADCLGLSMESEGALEVARRARGTPRIANRLLRRVRDYAEVKGNGHICAEVADKALNM 255

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D  GFD +D + L  I   FGGGPVGI+ ++A + E +D IED++EPY+IQQG++QR
Sbjct: 256 LDVDAQGFDYMDRKLLLAIMEKFGGGPVGIDNMAAAIGEEKDTIEDVLEPYLIQQGYLQR 315

Query: 313 TPRGRLLMPIAWQHLGID 330
           TPRGR+    A+ H GI+
Sbjct: 316 TPRGRIATDRAYLHFGIE 333


>gi|152988470|ref|YP_001349890.1| Holliday junction DNA helicase RuvB [Pseudomonas aeruginosa PA7]
 gi|166231539|sp|A6VA05|RUVB_PSEA7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|150963628|gb|ABR85653.1| holliday junction DNA helicase RuvB [Pseudomonas aeruginosa PA7]
          Length = 352

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 192/313 (61%), Positives = 238/313 (76%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  L ++ GQ      +++FI AA+ R EALDH L  GPPGLGKTTLA ++A+E+GV+
Sbjct: 24  IRPLKLADYIGQPSVREQMELFIHAARGRQEALDHTLIFGPPGLGKTTLANIIAQEMGVS 83

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            +STSGPV+ + GDLAALLTNLE  DVLF+DEIHRLS IVEE+LYPAMEDFQLD+M+GEG
Sbjct: 84  IKSTSGPVLERPGDLAALLTNLEAGDVLFVDEIHRLSPIVEEVLYPAMEDFQLDIMIGEG 143

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY +EDL TIV R A + GL
Sbjct: 144 PAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQRLEFYNVEDLATIVSRSAGILGL 203

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  + A EIA R+RGTPRIA RLLRRVRDFAEV     ITR IAD AL  L +D+ GFD
Sbjct: 204 QIETQGAAEIAKRARGTPRIANRLLRRVRDFAEVRGQGDITRVIADKALNLLDVDERGFD 263

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            LD R L  +   F GGPVGI+ ++A LSE R  IED++EPY+IQQG+I RTPRGR++  
Sbjct: 264 HLDRRLLLTMIDKFDGGPVGIDNLAAALSEERHTIEDVLEPYLIQQGYIMRTPRGRVVTR 323

Query: 322 IAWQHLGIDIPHR 334
            A+ H G++IP R
Sbjct: 324 HAYLHFGLNIPKR 336


>gi|209695356|ref|YP_002263285.1| Holliday junction DNA helicase RuvB [Aliivibrio salmonicida
           LFI1238]
 gi|226698771|sp|B6EGJ4|RUVB_ALISL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|208009308|emb|CAQ79574.1| holliday junction ATP-dependent DNA helicase RuvB [Aliivibrio
           salmonicida LFI1238]
          Length = 337

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 186/313 (59%), Positives = 242/313 (77%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ LE++ GQ    S +++FI+AA+ R E LDH+L  GPPGLGKTTLA +VA E+GV+
Sbjct: 25  IRPKKLEDYRGQDHVRSQMEIFIKAAQMRQEPLDHLLIFGPPGLGKTTLANIVANEMGVS 84

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R+TSGPV+ KAGDLAALLTNLE+ D+LFIDEIHRLS +VEEILYPAMED+QLD+M+GEG
Sbjct: 85  IRTTSGPVLEKAGDLAALLTNLEENDILFIDEIHRLSPVVEEILYPAMEDYQLDIMIGEG 144

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  RL +Y+++DL+ IVQR A    L
Sbjct: 145 PAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEYYKVDDLQYIVQRSADCLNL 204

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
           ++  E A E+A R+RGTPRIA RLLRRVRD+A+V     I+ +IAD AL  L +D  GFD
Sbjct: 205 SMESEGALEVARRARGTPRIANRLLRRVRDYADVMSDSHISPDIADKALNMLDVDVCGFD 264

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  I   F GGPVG++ ++A + E +D IED+IEPY+IQQG++QRTPRGR++  
Sbjct: 265 YMDRKLLLAIMEKFNGGPVGLDNVAAAIGEEKDTIEDVIEPYLIQQGYLQRTPRGRIVSD 324

Query: 322 IAWQHLGIDIPHR 334
            A+ H GID P +
Sbjct: 325 RAYLHFGIDRPDK 337


>gi|300717083|ref|YP_003741886.1| Holliday junction ATP-dependent DNA helicase [Erwinia billingiae
           Eb661]
 gi|299062919|emb|CAX60039.1| Holliday junction ATP-dependent DNA helicase [Erwinia billingiae
           Eb661]
          Length = 334

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 188/319 (58%), Positives = 246/319 (77%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
            +++E+     +RP+ L+E+ GQ      +++FI+AAK R +ALDH+L  GPPGLGKTTL
Sbjct: 12  TITEEEVIDRAIRPKLLQEYVGQPVVREQMEIFIQAAKMRGDALDHLLIFGPPGLGKTTL 71

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           A +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS +VEE+LYPAME
Sbjct: 72  ANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAME 131

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           D+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  RL FY++EDL+ 
Sbjct: 132 DYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYKVEDLRH 191

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           IV R A   GL ++DE A EIA R+RGTPRIA RLLRRVRDF+EV  A +++ ++A  AL
Sbjct: 192 IVSRSAACLGLPLSDEGALEIARRARGTPRIANRLLRRVRDFSEVRAAGSLSGDVASRAL 251

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
             L++D  GFD +D + L  I   F GGPVG++ ++A + E R+ IED++EPY+IQQGFI
Sbjct: 252 DMLSVDTEGFDYMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFI 311

Query: 311 QRTPRGRLLMPIAWQHLGI 329
           QRTPRGR+    A++H GI
Sbjct: 312 QRTPRGRMATNHAYKHFGI 330


>gi|222055416|ref|YP_002537778.1| Holliday junction DNA helicase RuvB [Geobacter sp. FRC-32]
 gi|254767428|sp|B9LZC4|RUVB_GEOSF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|221564705|gb|ACM20677.1| Holliday junction DNA helicase RuvB [Geobacter sp. FRC-32]
          Length = 339

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 189/326 (57%), Positives = 247/326 (75%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           ++ +++ +D   + LRP++L+++ GQ +A  NL+VFIEAA+ R EALDHVL  GPPGLGK
Sbjct: 5   ITPDMTDDDLLEATLRPKSLDDYVGQEKAKGNLRVFIEAARGRGEALDHVLLYGPPGLGK 64

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127
           TTLA ++A E+GVN +STSGPVI + GDLAA+LTNLE  DVLFIDEIHRLS +VEEILYP
Sbjct: 65  TTLANIIACEMGVNIKSTSGPVIERPGDLAAILTNLETHDVLFIDEIHRLSHVVEEILYP 124

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           AMEDFQLD+++G+GPSAR++K++L +FTL+ ATTR GLL++PL+DRFG+  RL FY IE+
Sbjct: 125 AMEDFQLDIIIGQGPSARTIKLDLPKFTLVGATTRAGLLSSPLRDRFGVISRLEFYTIEE 184

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           L  I+ R A++ G+ +  E A E+A RSRGTPRIA RLLRRVRDFA+V     IT  +  
Sbjct: 185 LAFIITRSARILGMEIKPEGATELARRSRGTPRIANRLLRRVRDFAQVKADGVITLNVVQ 244

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
            AL  L ID MGFD +D   L  I   FGGGPVG++TI+A +SE  D IED+ EP++IQ 
Sbjct: 245 DALALLEIDHMGFDYMDRMILLTIIDKFGGGPVGLDTIAAAISEESDTIEDVYEPFLIQN 304

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
           GF+ RTPRGR+    A++H G  +P 
Sbjct: 305 GFLNRTPRGRVATRAAYEHFGRIVPE 330


>gi|254499311|ref|ZP_05111983.1| Holliday junction DNA helicase B [Legionella drancourtii LLAP12]
 gi|254351466|gb|EET10329.1| Holliday junction DNA helicase B [Legionella drancourtii LLAP12]
          Length = 336

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 191/332 (57%), Positives = 250/332 (75%), Gaps = 3/332 (0%)

Query: 1   MMDREGLLS--RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M++ + L+S    VS+E  D ++ RP +L E+ GQ    S +++FI+AAK R +ALDHVL
Sbjct: 1   MLESDRLISTQSTVSEEAIDRAI-RPLSLREYIGQEAVSSQMQIFIDAAKKRNDALDHVL 59

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA ++A E+GVN R TSGPVI +AGD+AA+LTNL++ DVLFIDEIHRLS
Sbjct: 60  IFGPPGLGKTTLANIIAHEMGVNLRQTSGPVIERAGDIAAILTNLQENDVLFIDEIHRLS 119

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++EEILYPAMED++LD+M+GEGP+ARS+K+ L  FTLI ATTR GLLT+PL+DRFGI  
Sbjct: 120 PVIEEILYPAMEDYKLDIMIGEGPAARSIKLELPPFTLIGATTRAGLLTSPLRDRFGIVQ 179

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           RL +Y I+ L  IV R A+L  +    E A EIAMRSRGTPRIA RLLRRVRD+AEV  +
Sbjct: 180 RLEYYSIDSLSQIVSRSAQLLNVVTQSEGAREIAMRSRGTPRIANRLLRRVRDYAEVKGS 239

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             I  +IA  AL  L +DK GFD +D + L  +   FGGGPVG+++I+A + E +  IED
Sbjct: 240 GVINIDIAQRALEMLDVDKNGFDLMDRKLLLSVIEQFGGGPVGVDSIAAAIGEEKGTIED 299

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           ++EP++IQQGF+ RTPRGR+  P A+QH G++
Sbjct: 300 VLEPFLIQQGFLMRTPRGRIATPRAYQHFGLN 331


>gi|238693244|sp|B4RTT8|RUVB_ALTMD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
          Length = 334

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 189/330 (57%), Positives = 248/330 (75%), Gaps = 1/330 (0%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L++   S ED  I   +RP+ LE++TGQ   C  +++FI+AA+ R +ALDH+L 
Sbjct: 1   MIEADRLITPEASTEDEVIDRAIRPKMLEDYTGQPHVCEQMEIFIQAARNRDDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN ++TSGPV+ KAGDLAALLTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNIKTTSGPVLEKAGDLAALLTNLERNDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY ++DL +IV R A    L + +E A E+A RSRGTPRIA RLLRRVRD+AE+    
Sbjct: 181 LEFYNVKDLTSIVARSASYLNLEMNEEGAQEVARRSRGTPRIANRLLRRVRDYAEIKSDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           T+  E A  AL  L +DK GFD +D + L+ I   F GGPVG++ ++A + E ++ IED+
Sbjct: 241 TVGAETAAKALDMLDVDKEGFDYMDRKLLSAIIEKFDGGPVGLDNLAAAIGEEKETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           IEP++IQQGF+QRTPRGR++   A+ H G 
Sbjct: 301 IEPFLIQQGFLQRTPRGRIVSQRAYLHFGF 330


>gi|15596164|ref|NP_249658.1| Holliday junction DNA helicase RuvB [Pseudomonas aeruginosa PAO1]
 gi|107100424|ref|ZP_01364342.1| hypothetical protein PaerPA_01001449 [Pseudomonas aeruginosa PACS2]
 gi|116048892|ref|YP_792307.1| Holliday junction DNA helicase RuvB [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218893062|ref|YP_002441931.1| Holliday junction DNA helicase RuvB [Pseudomonas aeruginosa LESB58]
 gi|254239315|ref|ZP_04932638.1| Holliday junction DNA helicase RuvB [Pseudomonas aeruginosa C3719]
 gi|254245250|ref|ZP_04938572.1| Holliday junction DNA helicase RuvB [Pseudomonas aeruginosa 2192]
 gi|296390674|ref|ZP_06880149.1| Holliday junction DNA helicase RuvB [Pseudomonas aeruginosa PAb1]
 gi|313105854|ref|ZP_07792117.1| Holliday junction DNA helicase RuvB [Pseudomonas aeruginosa 39016]
 gi|12231031|sp|Q51426|RUVB_PSEAE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|122257999|sp|Q02IC9|RUVB_PSEAB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|226725463|sp|B7UXW5|RUVB_PSEA8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|9946874|gb|AAG04356.1|AE004530_9 Holliday junction DNA helicase RuvB [Pseudomonas aeruginosa PAO1]
 gi|115584113|gb|ABJ10128.1| Holliday junction DNA helicase RuvB [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126171246|gb|EAZ56757.1| Holliday junction DNA helicase RuvB [Pseudomonas aeruginosa C3719]
 gi|126198628|gb|EAZ62691.1| Holliday junction DNA helicase RuvB [Pseudomonas aeruginosa 2192]
 gi|218773290|emb|CAW29102.1| Holliday junction DNA helicase RuvB [Pseudomonas aeruginosa LESB58]
 gi|310878619|gb|EFQ37213.1| Holliday junction DNA helicase RuvB [Pseudomonas aeruginosa 39016]
          Length = 352

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 192/313 (61%), Positives = 238/313 (76%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  L ++ GQ      +++FI AA+ R EALDH L  GPPGLGKTTLA ++A+E+GV+
Sbjct: 24  IRPLKLADYIGQPSVREQMELFIHAARGRQEALDHTLIFGPPGLGKTTLANIIAQEMGVS 83

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            +STSGPV+ + GDLAALLTNLE  DVLF+DEIHRLS IVEE+LYPAMEDFQLD+M+GEG
Sbjct: 84  IKSTSGPVLERPGDLAALLTNLEAGDVLFVDEIHRLSPIVEEVLYPAMEDFQLDIMIGEG 143

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY +EDL TIV R A + GL
Sbjct: 144 PAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQRLEFYNVEDLATIVSRSAGILGL 203

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  + A EIA R+RGTPRIA RLLRRVRDFAEV     ITR IAD AL  L +D+ GFD
Sbjct: 204 EIEPQGAAEIAKRARGTPRIANRLLRRVRDFAEVRGQGDITRVIADKALNLLDVDERGFD 263

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            LD R L  +   F GGPVGI+ ++A LSE R  IED++EPY+IQQG+I RTPRGR++  
Sbjct: 264 HLDRRLLLTMIDKFDGGPVGIDNLAAALSEERHTIEDVLEPYLIQQGYIMRTPRGRVVTR 323

Query: 322 IAWQHLGIDIPHR 334
            A+ H G++IP R
Sbjct: 324 HAYLHFGLNIPKR 336


>gi|269138791|ref|YP_003295492.1| holliday junction resolvasome, helicase subunit [Edwardsiella tarda
           EIB202]
 gi|267984452|gb|ACY84281.1| holliday junction resolvasome, helicase subunit [Edwardsiella tarda
           EIB202]
 gi|304558783|gb|ADM41447.1| Holliday junction DNA helicase RuvB [Edwardsiella tarda FL6-60]
          Length = 334

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 188/309 (60%), Positives = 239/309 (77%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+TL ++ GQ +    +++FI+AAK R +ALDH+L  GPPGLGKTTLA +VA E+GVN
Sbjct: 23  IRPKTLADYVGQPQVRGQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS +VEE+LYPAMED+QLD+M+GEG
Sbjct: 83  LRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEG 142

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+KI+L  FTL+ ATTR G LT+PL+DRFGI  RL FY++ DL+ IV R A+  GL
Sbjct: 143 PAARSIKIDLPPFTLVGATTRAGSLTSPLRDRFGIVQRLEFYQVADLQHIVGRSAQCLGL 202

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T+E A E+A RSRGTPRIA RLLRRVRDFAEV     I  ++A  AL  L +D  GFD
Sbjct: 203 TLTEEGALEVARRSRGTPRIANRLLRRVRDFAEVCADGHIDGKVAAQALNMLDVDAAGFD 262

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   F GGPVG++ ++A + E R+ IED++EPY+IQQGFIQRTPRGR+   
Sbjct: 263 YMDRKLLLAVIDKFMGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFIQRTPRGRIATA 322

Query: 322 IAWQHLGID 330
            A+QH GID
Sbjct: 323 HAYQHFGID 331


>gi|134093540|ref|YP_001098615.1| Holliday junction DNA helicase RuvB [Herminiimonas arsenicoxydans]
 gi|172044146|sp|A4G1U9|RUVB_HERAR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|133737443|emb|CAL60486.1| Holliday junction DNA helicase ruvB [Herminiimonas arsenicoxydans]
          Length = 352

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 188/321 (58%), Positives = 242/321 (75%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           + E+A    LRP+ L+E+ GQ +    L++FI AA+ R EALDH L  GPPGLGKTTLA 
Sbjct: 21  ANEEAIERALRPKQLDEYVGQEKIRGQLEIFITAARQRREALDHTLLFGPPGLGKTTLAH 80

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++ARE+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+
Sbjct: 81  IIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDY 140

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           Q+D+M+GEGP+ARSV+++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY   +L  IV
Sbjct: 141 QIDIMIGEGPAARSVRLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTPLELTRIV 200

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R + L    + ++ A EIA RSRGTPRIA RLLRRVRD+AEV     IT+ +ADAAL+ 
Sbjct: 201 TRSSSLLNAPIDEDGAFEIAKRSRGTPRIANRLLRRVRDYAEVKGNGDITKAMADAALVM 260

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D +GFD +D + L  +   F GGPVG++ ++A + E RD IED++EPY+IQQGF+QR
Sbjct: 261 LDVDPVGFDVMDRKLLEAVLFKFNGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQR 320

Query: 313 TPRGRLLMPIAWQHLGIDIPH 333
           TPRGR+  P+A+ H G+  P 
Sbjct: 321 TPRGRIATPVAYAHFGVTAPQ 341


>gi|303230229|ref|ZP_07316997.1| Holliday junction DNA helicase RuvB [Veillonella atypica
           ACS-134-V-Col7a]
 gi|303231817|ref|ZP_07318533.1| Holliday junction DNA helicase RuvB [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302513524|gb|EFL55550.1| Holliday junction DNA helicase RuvB [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302515155|gb|EFL57129.1| Holliday junction DNA helicase RuvB [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 334

 Score =  389 bits (999), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 192/316 (60%), Positives = 237/316 (75%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           +ED     LRP+   E+ GQ EA  NL ++I+A K R EALDHVL  GPPGLGKTTLA +
Sbjct: 14  EEDVWQYSLRPKYFNEYIGQREAKDNLNIYIQATKQRGEALDHVLLYGPPGLGKTTLAGI 73

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +A ELGVNFR TSGP I KAGDLAA+LTNL++ DVLFIDEIHRLS  VEE+LY AMED+ 
Sbjct: 74  IANELGVNFRITSGPAIEKAGDLAAILTNLDEHDVLFIDEIHRLSRSVEEVLYSAMEDYA 133

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           LD+++G+GPSARSV+I+L +FTL+ ATTR G L  PL+DRFGI  RL +Y+ E+L+ IV 
Sbjct: 134 LDIIIGKGPSARSVRIDLPKFTLVGATTRAGALAAPLRDRFGIVSRLEYYKQEELEFIVT 193

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A +  + +    A EIA RSRGTPRIA RLL+RVRDFA+V     IT +IAD AL RL
Sbjct: 194 RAADILNIGIEQAGASEIARRSRGTPRIANRLLKRVRDFAQVVGNGVITADIADEALKRL 253

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +DKMG D++D R L  I  N+ GGPVGIETI+A +SE RD IED+ EPY++Q GF+ RT
Sbjct: 254 HVDKMGLDRIDRRVLKCIIENYDGGPVGIETIAAAVSEERDTIEDVYEPYLMQLGFLGRT 313

Query: 314 PRGRLLMPIAWQHLGI 329
           PRGR+   +A+ HLGI
Sbjct: 314 PRGRVATKLAYDHLGI 329


>gi|294085861|ref|YP_003552621.1| Holliday junction resolvasome, helicase subunit [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292665436|gb|ADE40537.1| Holliday junction resolvasome, helicase subunit [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 350

 Score =  389 bits (999), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 193/311 (62%), Positives = 236/311 (75%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP +L EF GQ     NL+ FI AA+ R +A+DH L  GPPGLGKTTLAQ+V+ ELGV 
Sbjct: 20  LRPTSLGEFIGQGNGRQNLETFIHAARDRGDAMDHTLLHGPPGLGKTTLAQIVSSELGVG 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           FR TSGPVIA+AGDLAALLTNL  RDVLFIDEIHRL+ +VEE+LYPAMEDFQLDL++GEG
Sbjct: 80  FRGTSGPVIARAGDLAALLTNLRPRDVLFIDEIHRLAPVVEEVLYPAMEDFQLDLIIGEG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSARSV+I+L  FTL+ ATTR GLLT PL+DRFGI +R+ FY  ++L  I+ R A   GL
Sbjct: 140 PSARSVRIDLPPFTLVGATTRSGLLTTPLRDRFGIQMRMQFYTRDELALILHRQAVKLGL 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  + A EIA R+RGTPR+AGRLLRRVRD A VA    +T EIAD AL RL +D  G D
Sbjct: 200 DLAADGASEIAGRARGTPRVAGRLLRRVRDIAAVAGHNRVTAEIADTALHRLEVDAAGLD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D RYL+ +A ++ GGPVG+ET++A LSE RD +E++IEPY++Q G + RTPRGR L  
Sbjct: 260 AMDRRYLSCLAESYAGGPVGVETLAAVLSEQRDVLEEVIEPYLMQTGLLMRTPRGRCLSS 319

Query: 322 IAWQHLGIDIP 332
             W +LGI  P
Sbjct: 320 GGWSYLGITPP 330


>gi|160896674|ref|YP_001562256.1| Holliday junction DNA helicase RuvB [Delftia acidovorans SPH-1]
 gi|238687184|sp|A9BUG8|RUVB_DELAS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|160362258|gb|ABX33871.1| Holliday junction DNA helicase RuvB [Delftia acidovorans SPH-1]
          Length = 361

 Score =  389 bits (999), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 192/318 (60%), Positives = 240/318 (75%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E+A    LRP+ L+E+ GQ +A   L++FI AA+ R EALDHVL  GPPGLGKTTL+ ++
Sbjct: 39  EEAMERALRPKLLQEYVGQAKAREQLEIFIGAARKRNEALDHVLLFGPPGLGKTTLSHII 98

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A ELGVN R TSGPV+ K  DLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+Q+
Sbjct: 99  AAELGVNLRQTSGPVLEKPKDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDYQI 158

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D+M+GEGP+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  E+L  IV+R
Sbjct: 159 DIMIGEGPAARSIKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTAEELARIVRR 218

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A L    + DE A EIA RSRGTPRIA RLLRRVRD+A+V    +ITRE+AD AL  L 
Sbjct: 219 SAGLLNAPIDDEGAFEIARRSRGTPRIANRLLRRVRDYADVRGDGSITRELADRALAMLD 278

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D  GFD +D + L  +   F GGPVG++ I+A + E    IED+IEPY+IQQGF+QRTP
Sbjct: 279 VDPQGFDIMDRKLLEAVVHRFDGGPVGLDNIAASIGEEAGTIEDVIEPYLIQQGFLQRTP 338

Query: 315 RGRLLMPIAWQHLGIDIP 332
           RGR+    A++HLG+ +P
Sbjct: 339 RGRMATQAAYRHLGLPVP 356


>gi|323496590|ref|ZP_08101643.1| Holliday junction DNA helicase RuvB [Vibrio sinaloensis DSM 21326]
 gi|323318336|gb|EGA71294.1| Holliday junction DNA helicase RuvB [Vibrio sinaloensis DSM 21326]
          Length = 334

 Score =  389 bits (999), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 188/317 (59%), Positives = 242/317 (76%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           +ED     +RP+ LE++ GQ      +++FI+AA+ R EALDH+L  GPPGLGKTTLA +
Sbjct: 17  EEDVIDRAIRPKKLEDYKGQDHVRDQMEIFIKAAQLREEALDHLLIFGPPGLGKTTLANI 76

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           VA E+GVN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS +VEE+LYPAMED+Q
Sbjct: 77  VANEMGVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQ 136

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           LD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  RL +Y+I DL+ IVQ
Sbjct: 137 LDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGITQRLEYYKIPDLQNIVQ 196

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A   GL++  + A E+A R+RGTPRIA RLLRRVRD+AEV     I  ++AD AL  L
Sbjct: 197 RSADCLGLSMEADGALEVARRARGTPRIANRLLRRVRDYAEVKGNGHICADVADKALNML 256

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D  GFD +D + L  I   FGGGPVG++ ++A + E +D IED++EPY+IQQG++QRT
Sbjct: 257 DVDAQGFDYMDRKLLLAIMEKFGGGPVGLDNMAAAIGEEKDTIEDVLEPYLIQQGYLQRT 316

Query: 314 PRGRLLMPIAWQHLGID 330
           PRGR+    A+ H GI+
Sbjct: 317 PRGRIATDRAYLHFGIE 333


>gi|307244276|ref|ZP_07526391.1| Holliday junction DNA helicase RuvB [Peptostreptococcus stomatis
           DSM 17678]
 gi|306492426|gb|EFM64464.1| Holliday junction DNA helicase RuvB [Peptostreptococcus stomatis
           DSM 17678]
          Length = 337

 Score =  389 bits (999), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 183/329 (55%), Positives = 254/329 (77%), Gaps = 1/329 (0%)

Query: 2   MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD E +++ ++ +ED DI + LRP++L+E+ GQ ++   L++FI+AAK+R+E+LDHVL  
Sbjct: 1   MDEERIITSSMKEEDFDIENSLRPKSLDEYLGQEKSKEQLRIFIDAAKSRSESLDHVLLY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A E+GVN R TSGP I +AGDLAA+LTNL++ DVLFIDEIHR++  
Sbjct: 61  GPPGLGKTTLASIIANEMGVNLRITSGPAIERAGDLAAILTNLQENDVLFIDEIHRINRS 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDF LD+++G+GPSARS++++L +FTLI ATTR G+LTNPL+DRFG+  +L
Sbjct: 121 VEEVLYPAMEDFCLDIIIGKGPSARSIRLDLPKFTLIGATTRAGMLTNPLRDRFGVICKL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           ++Y+ ++L  IV+R + +    + D+ A EIA RSRGTPRIA RLL+RVRDFA+V     
Sbjct: 181 DYYKEDELAEIVRRSSGILNAGIMDDGAVEIARRSRGTPRIANRLLKRVRDFAQVKADGN 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           IT ++  AAL  L +D +G D +D + L  I   F GGPVG++T++A + E R+ IED+ 
Sbjct: 241 ITDQVTQAALELLGVDSLGLDFVDKKLLMTIIEKFNGGPVGLDTLAASIGEDRNTIEDVY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           EPY++Q GFI R PRGR+ MP A+QHLGI
Sbjct: 301 EPYLLQLGFINRAPRGRIAMPRAYQHLGI 329


>gi|149927725|ref|ZP_01915977.1| Holliday junction DNA helicase B [Limnobacter sp. MED105]
 gi|149823551|gb|EDM82781.1| Holliday junction DNA helicase B [Limnobacter sp. MED105]
          Length = 351

 Score =  389 bits (999), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 192/324 (59%), Positives = 238/324 (73%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           ++    E+A    LRP+ L+E+ GQ +    L +FI AA+AR EALDHVL  GPPGLGKT
Sbjct: 11  TKTTPAEEAFERALRPKHLDEYVGQQKIRDQLDIFIAAARARNEALDHVLLFGPPGLGKT 70

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           TLA ++ARE+GVN R TSGPV+ + GDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA
Sbjct: 71  TLAHILAREMGVNLRQTSGPVLERPGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPA 130

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +ED+Q+D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  E+L
Sbjct: 131 LEDYQIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYTPEEL 190

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             IV R A L           EIA RSRGTPRIA RLLRRVRD+A+V     IT E+ADA
Sbjct: 191 SRIVARSANLLDTPAEASGCLEIARRSRGTPRIANRLLRRVRDYAQVKADGIITAEVADA 250

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL  L +DK+G D +D R L  I   FGGGPVG+E+++A + E +D IED++EPY+IQQG
Sbjct: 251 ALTMLDVDKVGLDPMDRRLLETIIHKFGGGPVGLESVAAAIGEEKDTIEDVLEPYLIQQG 310

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIP 332
           +IQRTPRGR+     + H G+  P
Sbjct: 311 YIQRTPRGRIATLNTYAHFGLTAP 334


>gi|52424768|ref|YP_087905.1| Holliday junction DNA helicase B [Mannheimia succiniciproducens
           MBEL55E]
 gi|68715412|sp|Q65UP0|RUVB_MANSM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|52306820|gb|AAU37320.1| RuvB protein [Mannheimia succiniciproducens MBEL55E]
          Length = 335

 Score =  389 bits (999), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 191/331 (57%), Positives = 249/331 (75%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + ++S N    D  I   +RP+ L ++ GQ +    + +FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRIISSNAQLGDEYIDRAIRPKLLTDYVGQPQVREQMGIFIQAAKLRQDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            +EE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 AIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY +EDL +IV R A    L ++D A+ EIA RSRGTPRIA RLLRRVRDFA+V +A 
Sbjct: 181 LEFYSVEDLTSIVARSAGCLNLEMSDGASHEIARRSRGTPRIANRLLRRVRDFADVKNAG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I+ +IA +AL  L ID+ GFD LD + L+ +   F GGPVG++ ++A + E RD IED+
Sbjct: 241 IISEDIAKSALSMLDIDQAGFDYLDRKLLSAVIERFDGGPVGLDNLAAAIGEERDTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           +EPY+IQQGF+QRTPRGR+     ++H G+D
Sbjct: 301 LEPYLIQQGFLQRTPRGRIATSRTYRHFGLD 331


>gi|261868501|ref|YP_003256423.1| Holliday junction DNA helicase RuvB [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413833|gb|ACX83204.1| holliday junction DNA helicase RuvB [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 339

 Score =  389 bits (999), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 189/316 (59%), Positives = 238/316 (75%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           ED     +RP+ L ++ GQ + C  +++FI+AAK R +ALDH+L  GPPGLGKTTLA +V
Sbjct: 18  EDVIDRAIRPKLLADYVGQPQVCEQMEIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIV 77

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS  +EE+LYPAMED+QL
Sbjct: 78  ANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQL 137

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  RL FY + DL +IV R
Sbjct: 138 DIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYSVSDLTSIVSR 197

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A    L + D AA EIA RSRGTPRIA RLLRRVRD+A+V +   I+ EIA AAL  L 
Sbjct: 198 SAVCLQLKINDTAAYEIARRSRGTPRIANRLLRRVRDYADVRNNGMISEEIAKAALSMLD 257

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           ID  GFD LD + LT +   F GGPVG++ ++A + E RD IED++EPY+IQQGF+QRT 
Sbjct: 258 IDDAGFDYLDRKLLTAVLERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTS 317

Query: 315 RGRLLMPIAWQHLGID 330
           RGR+     ++H GI+
Sbjct: 318 RGRIATLTTYRHFGIE 333


>gi|329903092|ref|ZP_08273366.1| Holliday junction DNA helicase RuvB [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327548501|gb|EGF33170.1| Holliday junction DNA helicase RuvB [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 351

 Score =  389 bits (998), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 189/319 (59%), Positives = 238/319 (74%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
            E+A    LRP+ L+E+ GQ +    L +FI AAK R EALDH L  GPPGLGKTTLA +
Sbjct: 22  NEEAIERALRPKQLDEYVGQEKIRDQLSIFITAAKQRREALDHTLLFGPPGLGKTTLAHI 81

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +ARE+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+Q
Sbjct: 82  IAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDYQ 141

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           +D+M+GEGP+ARSV+++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY   +L  IV 
Sbjct: 142 IDIMIGEGPAARSVRLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTATELARIVT 201

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A L    +  E A EIA RSRGTPRIA RLLRRVRD+AEV     IT+  ADAAL+ L
Sbjct: 202 RSASLLNAPIDPEGAFEIAKRSRGTPRIANRLLRRVRDYAEVKSNGDITKATADAALVML 261

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D +GFD +D + L  +   F GGPVG++ ++A + E R+ IED++EPY+IQQG++QRT
Sbjct: 262 DVDPVGFDLMDRKLLEAVLFKFSGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGYLQRT 321

Query: 314 PRGRLLMPIAWQHLGIDIP 332
           PRGR+  P+A+ H G+  P
Sbjct: 322 PRGRIATPLAYTHFGVAAP 340


>gi|90580118|ref|ZP_01235926.1| Holliday junction DNA helicase RuvB [Vibrio angustum S14]
 gi|90439003|gb|EAS64186.1| Holliday junction DNA helicase RuvB [Vibrio angustum S14]
          Length = 339

 Score =  389 bits (998), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 194/335 (57%), Positives = 254/335 (75%), Gaps = 3/335 (0%)

Query: 1   MMDREGLLSRN--VSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M++ + L+S N   ++ED  I   +RP+ L+++ GQ      +++FI+AAK R EALDH+
Sbjct: 1   MIEADRLVSSNFETTREDDIIDRAIRPKLLDDYQGQDHVRDQMEIFIKAAKMRDEALDHL 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTLA +VA E+GV+ R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRL
Sbjct: 61  LIFGPPGLGKTTLANIVANEMGVSIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           S  VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI 
Sbjct: 121 SPQVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIT 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            RL +Y++EDLK IV R AK  GL++ +  A E+AMR+RGTPRIA RLLRRVRD+AEV  
Sbjct: 181 QRLEYYKVEDLKDIVGRSAKCLGLSMEEGGAMEMAMRARGTPRIANRLLRRVRDYAEVKG 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
              I  +IA+ AL  L +D  GFD +D + L  I   F GGPVG++ ++A + E +D IE
Sbjct: 241 NGHICPDIANKALDMLDVDSSGFDYMDRKLLLAIIEKFMGGPVGLDNLAAAIGEEKDTIE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           D++EPY+IQQG++QRTPRGR+    A+ H G+D+P
Sbjct: 301 DVLEPYLIQQGYLQRTPRGRIATHRAYLHFGLDLP 335


>gi|226939020|ref|YP_002794091.1| Holliday junction DNA helicase RuvB [Laribacter hongkongensis
           HLHK9]
 gi|254767429|sp|C1D9W9|RUVB_LARHH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|226713944|gb|ACO73082.1| RuvB [Laribacter hongkongensis HLHK9]
          Length = 345

 Score =  389 bits (998), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 197/322 (61%), Positives = 244/322 (75%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           SQE+A    LRP+ L+++ GQ +A   L++FIEAAK R EALDHVL  GPPGLGKTTLA 
Sbjct: 23  SQEEALERALRPKALDDYVGQKKAREQLEIFIEAAKKRGEALDHVLLFGPPGLGKTTLAH 82

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           +++RELGVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+
Sbjct: 83  IISRELGVNLRQTSGPVLERAGDLAALLTNLEPHDVLFIDEIHRLSPVVEEILYPALEDY 142

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           Q+D+M+GEGP+ARSVKI+L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  E+L  IV
Sbjct: 143 QIDIMIGEGPAARSVKIDLPPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTPEELTRIV 202

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           +R A L  + + +E A E+A RSRGTPRIA RLLRRVRDFAEV     +T  +ADAAL  
Sbjct: 203 RRSAGLLEVQLGEEGAFEVARRSRGTPRIANRLLRRVRDFAEVRADGVVTAAVADAALSM 262

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D  G D +D + L  +   FGGGPVG++ ++A + E  D IED+IEPY+IQQG++QR
Sbjct: 263 LDVDPAGLDVMDRKLLAAVLEKFGGGPVGLDNVAAAIGESTDTIEDVIEPYLIQQGYLQR 322

Query: 313 TPRGRLLMPIAWQHLGIDIPHR 334
           TPRGR+   +AW H G   P R
Sbjct: 323 TPRGRMATALAWTHFGFVPPER 344


>gi|325981223|ref|YP_004293625.1| Holliday junction DNA helicase RuvB [Nitrosomonas sp. AL212]
 gi|325530742|gb|ADZ25463.1| Holliday junction DNA helicase RuvB [Nitrosomonas sp. AL212]
          Length = 348

 Score =  389 bits (998), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 192/317 (60%), Positives = 239/317 (75%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           SQE+     LRP  L+E+ GQ +    L++FIEAA+ R EALDHVL  GPPGLGKTTLA 
Sbjct: 15  SQEEILERALRPTQLDEYVGQEKIRGQLQIFIEAARNRREALDHVLLFGPPGLGKTTLAH 74

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++ARE+GVN R TSGPV+ + GDLAALLTNLE  DVLFIDEIHRLS IVEEILYPA+ED+
Sbjct: 75  IIAREMGVNLRQTSGPVLERPGDLAALLTNLEPNDVLFIDEIHRLSPIVEEILYPALEDY 134

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           QLD+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  E+L  IV
Sbjct: 135 QLDIMIGEGPAARSVKLDLPSFTLVGATTRAGMLTNPLRDRFGIVSRLEFYTSEELGKIV 194

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R A L  + ++ + A EIA RSRGTPRI  RLLRRVRD+A+V     ITR +ADAAL  
Sbjct: 195 TRSAGLLKVEISSDGALEIACRSRGTPRIVNRLLRRVRDYAQVKADGHITRLVADAALSM 254

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D +G D +D + L  +   F GGPVG++ ++A +SE RD IED++EPY+IQQGF++R
Sbjct: 255 LDVDAIGLDVMDRKLLLAVLEKFSGGPVGVDNLAAAISEERDTIEDVLEPYLIQQGFLKR 314

Query: 313 TPRGRLLMPIAWQHLGI 329
           T RGR+    A+QH GI
Sbjct: 315 TARGRVATTAAYQHFGI 331


>gi|260779156|ref|ZP_05888048.1| holliday junction DNA helicase RuvB [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260605320|gb|EEX31615.1| holliday junction DNA helicase RuvB [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 334

 Score =  389 bits (998), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 189/318 (59%), Positives = 240/318 (75%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
            +ED     +RP+ L ++ GQ      +++FI+AA  R EALDH+L  GPPGLGKTTLA 
Sbjct: 16  KEEDVIDRAIRPKKLADYQGQDHVRDQMEIFIKAANLREEALDHLLIFGPPGLGKTTLAN 75

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           +VA E+GVN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS +VEE+LYPAMED+
Sbjct: 76  IVANEMGVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDY 135

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  RL +Y+I DL+ IV
Sbjct: 136 QLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGITQRLEYYKIPDLQHIV 195

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           QR A   GL++  E A E+A R+RGTPRIA RLLRRVRD+AEV     I  +IAD AL  
Sbjct: 196 QRSADCLGLSMESEGALEVARRARGTPRIANRLLRRVRDYAEVKGNGHICADIADKALNM 255

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D  GFD +D + L  I   FGGGPVG++ ++A + E +D IED++EPY+IQQG++QR
Sbjct: 256 LDVDAQGFDYMDRKLLLAIMEKFGGGPVGLDNMAAAIGEEKDTIEDVLEPYLIQQGYLQR 315

Query: 313 TPRGRLLMPIAWQHLGID 330
           TPRGR+    A+ H GI+
Sbjct: 316 TPRGRIATDRAYLHFGIE 333


>gi|302879786|ref|YP_003848350.1| Holliday junction DNA helicase RuvB [Gallionella capsiferriformans
           ES-2]
 gi|302582575|gb|ADL56586.1| Holliday junction DNA helicase RuvB [Gallionella capsiferriformans
           ES-2]
          Length = 351

 Score =  389 bits (998), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 189/318 (59%), Positives = 241/318 (75%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           QE+A    LRP+ L+E+ GQ +    L++FI+AAK R E LDHVL  GPPGLGKTTLAQ+
Sbjct: 22  QEEALERALRPKQLDEYVGQEKIREQLEIFIQAAKQRQEPLDHVLLFGPPGLGKTTLAQI 81

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +ARE+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+Q
Sbjct: 82  IAREMGVNLRHTSGPVLERAGDLAALLTNLEPNDVLFIDEIHRLSPVVEEILYPALEDYQ 141

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           +D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  E+L+ IV 
Sbjct: 142 IDIMIGEGPAARSVKLDLPPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYTPEELQRIVM 201

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R + L  + ++ + A EIA RSRGTPRIA RLLRRVRD+A+V      TR +ADAAL  L
Sbjct: 202 RSSGLLEMNLSHDGAMEIARRSRGTPRIANRLLRRVRDYADVKAGGDATRRVADAALTML 261

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D  G D +D + L  I   F GGPVG++ ++A + E RD IED++EPY+IQQG++QRT
Sbjct: 262 DVDSQGLDVMDRKLLLTIIEKFMGGPVGVDNLAAAIGEERDTIEDVLEPYLIQQGYLQRT 321

Query: 314 PRGRLLMPIAWQHLGIDI 331
           PRGR+    A+ H G+ +
Sbjct: 322 PRGRMATANAYLHFGLTV 339


>gi|293390517|ref|ZP_06634851.1| holliday junction DNA helicase RuvB [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951051|gb|EFE01170.1| holliday junction DNA helicase RuvB [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 337

 Score =  388 bits (997), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 189/316 (59%), Positives = 238/316 (75%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           ED     +RP+ L ++ GQ + C  +++FI+AAK R +ALDH+L  GPPGLGKTTLA +V
Sbjct: 16  EDVIDRAIRPKLLADYVGQPQVCEQMEIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIV 75

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS  +EE+LYPAMED+QL
Sbjct: 76  ANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQL 135

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  RL FY + DL +IV R
Sbjct: 136 DIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYSVSDLTSIVSR 195

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A    L + D AA EIA RSRGTPRIA RLLRRVRD+A+V +   I+ EIA AAL  L 
Sbjct: 196 SAVCLQLKINDTAAYEIARRSRGTPRIANRLLRRVRDYADVRNNGMISEEIAKAALSMLD 255

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           ID  GFD LD + LT +   F GGPVG++ ++A + E RD IED++EPY+IQQGF+QRT 
Sbjct: 256 IDDAGFDYLDRKLLTAVLERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTS 315

Query: 315 RGRLLMPIAWQHLGID 330
           RGR+     ++H GI+
Sbjct: 316 RGRIATLTTYRHFGIE 331


>gi|206890403|ref|YP_002248714.1| holliday junction DNA helicase RuvB [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|259495680|sp|B5YKE9|RUVB_THEYD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|206742341|gb|ACI21398.1| holliday junction DNA helicase RuvB [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 325

 Score =  388 bits (997), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 191/322 (59%), Positives = 244/322 (75%), Gaps = 1/322 (0%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           + E  DI+L RP++L+EF GQ +   N++VFI+AA  R E LDHVLF GPPGLGKTTLA 
Sbjct: 3   NNELLDITL-RPKSLKEFIGQKKIKDNIEVFIKAALIRQEPLDHVLFCGPPGLGKTTLAT 61

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           V+A ELGVN +STSGPV+ +AGD+AA+LTNL DRD+LFIDEIHRL  +VEEILYPAMEDF
Sbjct: 62  VIANELGVNIKSTSGPVLERAGDVAAILTNLSDRDILFIDEIHRLPRMVEEILYPAMEDF 121

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            LD++VG+GPSARS+KINL RFTLI ATTR GL+T+PL+DRFG+  RL FY  E+LK IV
Sbjct: 122 TLDIIVGQGPSARSIKINLPRFTLIGATTRTGLITSPLRDRFGVVFRLEFYNSEELKEIV 181

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           +R A++ G+ + + AA EIA RSRGTPR+A RLL+R+RDFA+V     I  +IA  AL+ 
Sbjct: 182 KRSARILGILIEENAATEIARRSRGTPRVANRLLKRIRDFAQVKDKDIIDLQIAQEALIA 241

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           + +D  G D +D + L  I   F GGP GIE+I+A L E +D IED+ EPY++Q+GFI+R
Sbjct: 242 MDVDDYGLDDMDRKILLTIIEKFNGGPAGIESIAASLREDKDTIEDVYEPYLMQEGFIER 301

Query: 313 TPRGRLLMPIAWQHLGIDIPHR 334
           T RGR+    A++ L   IP R
Sbjct: 302 TARGRVATRFAYEVLKRKIPER 323


>gi|171464162|ref|YP_001798275.1| Holliday junction DNA helicase RuvB [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171193700|gb|ACB44661.1| Holliday junction DNA helicase RuvB [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 356

 Score =  388 bits (997), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 188/311 (60%), Positives = 235/311 (75%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E+ GQ +A + L++FI A +AR EALDHVL  GPPGLGKTTLA ++ARELGVN
Sbjct: 38  LRPKQLNEYVGQTKARAQLEIFISATRARQEALDHVLLFGPPGLGKTTLAHIIARELGVN 97

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGPV+ + GDLAALLTNLE+ DVLFIDEIHRLS +VEEILYPA+ED+ LD+M+GEG
Sbjct: 98  LRQTSGPVLDRPGDLAALLTNLEENDVLFIDEIHRLSPVVEEILYPALEDYSLDIMIGEG 157

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARSVKI+L  FTLI ATTR G+LTNPL+DRFGI  RL FY  ++L  I+ R   L   
Sbjct: 158 PAARSVKIDLKPFTLIGATTRAGMLTNPLRDRFGIVARLEFYTTKELTKIINRSTSLLKA 217

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  + + EIA R+RGTPRIA RLLRRVRD+AEV    TIT+ +ADAAL  L +D  GFD
Sbjct: 218 DIDPDGSIEIAKRARGTPRIANRLLRRVRDYAEVKGTGTITKAMADAALKMLDVDPSGFD 277

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  I   F GGPVGI+ ++A + E RD IED++EPY+IQQG++QRT RGR+   
Sbjct: 278 VMDRKLLEAILHKFDGGPVGIDNLAAAIGEERDTIEDVLEPYLIQQGYLQRTSRGRVATR 337

Query: 322 IAWQHLGIDIP 332
            A++H G+  P
Sbjct: 338 QAYEHFGLTPP 348


>gi|1183842|dbj|BAA11819.1| Holliday junction specific DNA helicase [Pseudomonas aeruginosa]
          Length = 352

 Score =  388 bits (996), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 191/313 (61%), Positives = 237/313 (75%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  L ++ GQ      +++FI AA+ R EALDH L  GPPGLGKTTLA ++A+E+GV+
Sbjct: 24  IRPLKLADYIGQPSVREQMELFIHAARGRQEALDHTLIFGPPGLGKTTLANIIAQEMGVS 83

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            +STSGPV+ + GDLAALLTNLE  DVLF+DEIHRLS IVEE+LYPAMEDFQLD+M+GEG
Sbjct: 84  IKSTSGPVLERPGDLAALLTNLEAGDVLFVDEIHRLSPIVEEVLYPAMEDFQLDIMIGEG 143

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ RS+K++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY +EDL TIV R A + GL
Sbjct: 144 PAGRSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQRLEFYNVEDLATIVSRSAGILGL 203

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  + A EIA R+RGTPRIA RLLRRVRDFAEV     ITR IAD AL  L +D+ GFD
Sbjct: 204 EIEPQGAAEIAKRARGTPRIANRLLRRVRDFAEVRGQGDITRVIADKALNLLDVDERGFD 263

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            LD R L  +   F GGPVGI+ ++A LSE R  IED++EPY+IQQG+I RTPRGR++  
Sbjct: 264 HLDRRLLLTMIDKFDGGPVGIDNLAAALSEERHTIEDVLEPYLIQQGYIMRTPRGRVVTR 323

Query: 322 IAWQHLGIDIPHR 334
            A+ H G++IP R
Sbjct: 324 HAYLHFGLNIPKR 336


>gi|315645786|ref|ZP_07898907.1| Holliday junction DNA helicase RuvB [Paenibacillus vortex V453]
 gi|315278547|gb|EFU41861.1| Holliday junction DNA helicase RuvB [Paenibacillus vortex V453]
          Length = 335

 Score =  388 bits (996), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 197/334 (58%), Positives = 248/334 (74%), Gaps = 3/334 (0%)

Query: 1   MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M DR  ++S N+  ++  + L LRPR L E+ GQ +   NLKV+IEAAK R EALDHVL 
Sbjct: 1   MDDR--IISANLMMDEQAVELSLRPRYLAEYIGQNQVKENLKVYIEAAKMRNEALDHVLL 58

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A ELGVN R+TSGP I + GDLAALLTNL++ DVLFIDEIHRL  
Sbjct: 59  YGPPGLGKTTLANIIANELGVNLRTTSGPAIERPGDLAALLTNLQEGDVLFIDEIHRLHR 118

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEE++YPAMEDF LD+M+G+GPSARSV+++L  FTLI ATTR GLL+ PL+DRFG+  R
Sbjct: 119 TVEEVMYPAMEDFALDIMIGKGPSARSVRLDLPPFTLIGATTRAGLLSAPLRDRFGVVSR 178

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY +++L  IV R A L G+ +  +AA EIA+RSRGTPRIA RLL+RVRD+A+V    
Sbjct: 179 LEFYTVDELSYIVSRNADLLGIEILGDAADEIALRSRGTPRIANRLLKRVRDYAQVRGDG 238

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT  IA  AL  L ID MG D +D + L  + R+F GGPVG++TI+A + E    IED+
Sbjct: 239 MITPAIAQEALKMLQIDPMGLDFIDHKMLNAMIRSFRGGPVGLDTIAATIGEESQTIEDV 298

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            EPY++Q GF+QRTPRGR++ P A+QHLGI  P 
Sbjct: 299 YEPYLLQIGFLQRTPRGRVVTPTAYQHLGIPFPE 332


>gi|261405409|ref|YP_003241650.1| Holliday junction DNA helicase RuvB [Paenibacillus sp. Y412MC10]
 gi|329926743|ref|ZP_08281151.1| Holliday junction DNA helicase RuvB [Paenibacillus sp. HGF5]
 gi|261281872|gb|ACX63843.1| Holliday junction DNA helicase RuvB [Paenibacillus sp. Y412MC10]
 gi|328938943|gb|EGG35311.1| Holliday junction DNA helicase RuvB [Paenibacillus sp. HGF5]
          Length = 335

 Score =  388 bits (996), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 196/334 (58%), Positives = 248/334 (74%), Gaps = 3/334 (0%)

Query: 1   MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M DR  ++S N+  ++  + L LRPR L E+ GQ +   NLKV+IEAAK R EALDHVL 
Sbjct: 1   MDDR--IISANLMMDEQAVELSLRPRYLAEYIGQNQVKENLKVYIEAAKMRNEALDHVLL 58

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A ELGVN R+TSGP I + GDLAALLTNL++ DVLFIDEIHRL  
Sbjct: 59  YGPPGLGKTTLANIIANELGVNLRTTSGPAIERPGDLAALLTNLQEGDVLFIDEIHRLHR 118

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEE++YPAMEDF LD+M+G+GPSARSV+++L  FTLI ATTR GLL+ PL+DRFG+  R
Sbjct: 119 TVEEVMYPAMEDFALDIMIGKGPSARSVRLDLPPFTLIGATTRAGLLSAPLRDRFGVVSR 178

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY +++L  IV R A L G+ +  EAA EIA+RSRGTPRIA RLL+RVRD+A+V    
Sbjct: 179 LEFYTVDELSYIVSRNADLLGIEILGEAAEEIALRSRGTPRIANRLLKRVRDYAQVRGDG 238

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT  IA  AL  L ID MG D +D + L  + ++F GGPVG++TI+A + E    IED+
Sbjct: 239 MITPSIAQEALKMLQIDPMGLDFIDHKMLNAMIKSFRGGPVGLDTIAATIGEESQTIEDV 298

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            EPY++Q G++QRTPRGR++ P A+QHLGI  P 
Sbjct: 299 YEPYLLQIGYLQRTPRGRVVTPTAYQHLGIPFPE 332


>gi|118580736|ref|YP_901986.1| Holliday junction DNA helicase RuvB [Pelobacter propionicus DSM
           2379]
 gi|166231534|sp|A1ARF8|RUVB_PELPD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|118503446|gb|ABK99928.1| Holliday junction DNA helicase RuvB [Pelobacter propionicus DSM
           2379]
          Length = 338

 Score =  388 bits (996), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 186/313 (59%), Positives = 240/313 (76%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           S LRP++L+++ GQ +   NL++FIEAA+ R EALDHVL  GPPGLGKTTLA +VA E+G
Sbjct: 18  STLRPKSLDDYIGQEKIKGNLRLFIEAARGRGEALDHVLLYGPPGLGKTTLANIVACEMG 77

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
           VN +STSGPVI + GDLAA+LTNLE  DVLFIDEIHRLS +VEEILYPAMEDFQLD+++G
Sbjct: 78  VNLKSTSGPVIERPGDLAAILTNLEPHDVLFIDEIHRLSHVVEEILYPAMEDFQLDIIIG 137

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199
           +GPSARS+K++L RFTL+ ATTR GLL++PL+DRFG+  R++FY  ++L TI+ R +++ 
Sbjct: 138 QGPSARSIKLDLPRFTLVGATTRAGLLSSPLRDRFGVISRMDFYTHDELATIITRSSRIL 197

Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259
           G+ +    A E++ RSRGTPRIA RLLRRVRDFA+V     ITR++    L  L ID+MG
Sbjct: 198 GMEIEPRGADELSRRSRGTPRIANRLLRRVRDFAQVRADGVITRQVVKETLALLEIDEMG 257

Query: 260 FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLL 319
           FD +D   L  I   F GGPVG++TI+A +SE  D IED+ EPYMIQ GF+ RTPRGR+ 
Sbjct: 258 FDHMDRMILLTIIDKFSGGPVGLDTIAAAISEESDTIEDVYEPYMIQNGFLNRTPRGRVA 317

Query: 320 MPIAWQHLGIDIP 332
              A++H G  +P
Sbjct: 318 TLAAYEHFGRSVP 330


>gi|325917785|ref|ZP_08179969.1| Holliday junction DNA helicase subunit RuvB [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325536001|gb|EGD07813.1| Holliday junction DNA helicase subunit RuvB [Xanthomonas
           vesicatoria ATCC 35937]
          Length = 359

 Score =  388 bits (996), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 195/332 (58%), Positives = 246/332 (74%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M ++  + S    ++DA  + +RP+ L ++ GQ      + ++I+AAKAR EA+DHVL  
Sbjct: 14  MTEQRIIASSATREDDAADASIRPKRLADYLGQQPVREQMDIYIQAAKARGEAMDHVLIF 73

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTL+ V+A ELGVN RSTSGPVI KAGDLAALLTNL+  DVLFIDEIHRLS +
Sbjct: 74  GPPGLGKTTLSHVIANELGVNLRSTSGPVIEKAGDLAALLTNLQPHDVLFIDEIHRLSPV 133

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDFQ+D+M+G+GP+ARS+KI+L  FTLI ATTR GLLT PL+DRFGI  RL
Sbjct: 134 VEEVLYPAMEDFQIDIMIGDGPAARSIKIDLPPFTLIGATTRAGLLTAPLRDRFGIVQRL 193

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY   +L  IV R A + G+  T E A EIA R+RGTPRIA RLLRRVRD+A+V  A  
Sbjct: 194 EFYSPAELTRIVIRSAAILGIDCTPEGAAEIARRARGTPRIANRLLRRVRDYAQVKAAGH 253

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I   +A AA+  L +D  GFD+LD R L  I  +F GGPVG+E+++A LSE R  +ED+I
Sbjct: 254 IDLPVAQAAMQMLKVDPEGFDELDRRMLRTIVEHFDGGPVGVESLAASLSEERGTLEDVI 313

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EPY+IQQGF+ RT RGR++ P A+ HLG+  P
Sbjct: 314 EPYLIQQGFLIRTARGRMVTPKAYLHLGLKPP 345


>gi|299533021|ref|ZP_07046408.1| Holliday junction DNA helicase RuvB [Comamonas testosteroni S44]
 gi|298719245|gb|EFI60215.1| Holliday junction DNA helicase RuvB [Comamonas testosteroni S44]
          Length = 364

 Score =  388 bits (996), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 190/311 (61%), Positives = 235/311 (75%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L+E+ GQ +A   L++FI AAK R+EALDHVL  GPPGLGKTTL+ ++A ELGVN
Sbjct: 49  LRPKQLDEYVGQAKAREQLEIFIGAAKKRSEALDHVLLFGPPGLGKTTLSHIIAAELGVN 108

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGPV+ K  DLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+Q+D+M+GEG
Sbjct: 109 LRQTSGPVLEKPKDLAALLTNLEPNDVLFIDEIHRLSPVVEEILYPALEDYQIDIMIGEG 168

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  E+L  IV+R A L   
Sbjct: 169 PAARSIKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTSEELSRIVRRSAGLLNA 228

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  E   EIA RSRGTPRIA RLLRRVRD+A+V     ITREIAD AL  L +D  GFD
Sbjct: 229 PIDAEGCFEIARRSRGTPRIANRLLRRVRDYADVKGDGRITREIADRALAMLDVDPQGFD 288

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   F GGPVG++ I+A + E    IED+IEPY+IQQGF+QRTPRGR+   
Sbjct: 289 IMDRKLLEAVVHRFDGGPVGLDNIAASIGEESGTIEDVIEPYLIQQGFLQRTPRGRMATQ 348

Query: 322 IAWQHLGIDIP 332
            A++HLG+ +P
Sbjct: 349 AAYRHLGLPVP 359


>gi|259908220|ref|YP_002648576.1| Holliday junction DNA helicase RuvB [Erwinia pyrifoliae Ep1/96]
 gi|224963842|emb|CAX55344.1| Holliday junction ATP-dependent DNA helicase [Erwinia pyrifoliae
           Ep1/96]
 gi|283478150|emb|CAY74066.1| Holliday junction ATP-dependent DNA helicase ruvB [Erwinia
           pyrifoliae DSM 12163]
 gi|310767865|gb|ADP12815.1| Holliday junction DNA helicase RuvB [Erwinia sp. Ejp617]
          Length = 334

 Score =  388 bits (996), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 190/318 (59%), Positives = 244/318 (76%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +++E+     +RP+ LEE+ GQ      +++FI+AA+ R +ALDH+L  GPPGLGKTTLA
Sbjct: 13  ITEEEVIDRAIRPKMLEEYVGQPVVREQMEIFIKAAQMRGDALDHLLIFGPPGLGKTTLA 72

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS +VEE+LYPAMED
Sbjct: 73  NIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMED 132

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           +QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  RL FY +EDL+ I
Sbjct: 133 YQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYRVEDLQHI 192

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           V R A   GL ++DE A EIA R+RGTPRIA RLLRRVRDFAEV  A  ++ ++A  AL 
Sbjct: 193 VGRSAACLGLPLSDEGALEIARRARGTPRIANRLLRRVRDFAEVRAAGEMSGDVACKALD 252

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L++D  GFD +D + L  I   F GGPVG++ ++A + E R+ IED++EPY+IQQGFIQ
Sbjct: 253 MLSVDSEGFDYMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFIQ 312

Query: 312 RTPRGRLLMPIAWQHLGI 329
           RTPRGRL    A++H GI
Sbjct: 313 RTPRGRLATQHAYKHFGI 330


>gi|322420883|ref|YP_004200106.1| Holliday junction DNA helicase RuvB [Geobacter sp. M18]
 gi|320127270|gb|ADW14830.1| Holliday junction DNA helicase RuvB [Geobacter sp. M18]
          Length = 337

 Score =  387 bits (995), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 190/322 (59%), Positives = 244/322 (75%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
            +S   S+ED   + LRPR L ++ GQ +A  NL +FI+AA+ R EALDHVL  GPPGLG
Sbjct: 4   FISAERSEEDLLEASLRPRALADYVGQEKAKGNLGLFIDAARGRGEALDHVLLYGPPGLG 63

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTTLA ++A E+GV+ +STSGPVI + GDLAA+LTNLE  DVLFIDEIHRLS +VEEILY
Sbjct: 64  KTTLANIIACEMGVSIKSTSGPVIERPGDLAAILTNLEPHDVLFIDEIHRLSHVVEEILY 123

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           PAMEDFQLD+++G+GPSAR++K++L +FTL+ ATTR GLL++PL+DRFG+  RL FY  E
Sbjct: 124 PAMEDFQLDIIIGQGPSARTIKLDLPKFTLVGATTRAGLLSSPLRDRFGVISRLEFYTHE 183

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +L  I+ R +++ G+A+  + A E+A RSRGTPRIA RLLRRVRDFA+V     ITR++A
Sbjct: 184 ELAFIITRSSRIFGMAIAPDGALELARRSRGTPRIANRLLRRVRDFAQVRADGVITRDVA 243

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           D AL  L ID MGFD +D   L  I   FGGGPVG++TI+A +SE  D IED+ EP++IQ
Sbjct: 244 DQALALLEIDDMGFDTMDRAILLTIIDKFGGGPVGLDTIAAAISEESDTIEDVYEPFLIQ 303

Query: 307 QGFIQRTPRGRLLMPIAWQHLG 328
            GF+ RTPRGR+    A+ H G
Sbjct: 304 NGFLNRTPRGRVATAAAYSHFG 325


>gi|77360813|ref|YP_340388.1| Holliday junction DNA helicase B [Pseudoalteromonas haloplanktis
           TAC125]
 gi|97190221|sp|Q3IIJ2|RUVB_PSEHT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|76875724|emb|CAI86945.1| Holliday junction helicase, subunit B [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 335

 Score =  387 bits (995), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 189/316 (59%), Positives = 238/316 (75%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
            ED+    +RP+ L ++ GQ      +++FIEAA++R EALDH+L  GPPGLGKTTLA +
Sbjct: 15  NEDSIDRAIRPKLLADYRGQPHVKQQMEIFIEAARSRGEALDHLLIFGPPGLGKTTLANI 74

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           VA EL VN ++TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS  VEEILYPAMED+Q
Sbjct: 75  VANELQVNIKATSGPVLEKAGDLAALLTNLEEGDVLFIDEIHRLSPQVEEILYPAMEDYQ 134

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           LD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  RL FY +EDL  IV 
Sbjct: 135 LDIMIGEGPAARSIKLDLPSFTLIGATTRAGSLTSPLRDRFGIVQRLEFYSVEDLSYIVG 194

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A    L + DE A EIA RSRGTPRIA RLLRRVRD+ +V    T+  E+A+ AL  +
Sbjct: 195 RSAHFLDLEMCDEGAVEIAKRSRGTPRIANRLLRRVRDYTQVKSDGTVNAEVAELALNMI 254

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +DK GFD +D +YL  I   F GGPVG++ I+A + E ++ IED+IEP++IQQGFIQRT
Sbjct: 255 DVDKSGFDYMDRKYLLAIIEKFMGGPVGLDNIAAAIGEEKETIEDVIEPFLIQQGFIQRT 314

Query: 314 PRGRLLMPIAWQHLGI 329
           PRGR++   A+ H G+
Sbjct: 315 PRGRIVSDNAYHHFGL 330


>gi|227111607|ref|ZP_03825263.1| Holliday junction DNA helicase RuvB [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 336

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 190/330 (57%), Positives = 250/330 (75%), Gaps = 1/330 (0%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S +   E+  I   +RP+ L E+ GQ +    +++FI+AA+ R +ALDH+L 
Sbjct: 1   MIEADRLISADAVPEEEFIDRAIRPKLLNEYVGQPQVREQMEIFIQAARKRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAALLTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNMRTTSGPVLEKAGDLAALLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++EDL+ IV R A+  GL +T E A E+A R+RGTPRIA RLLRRVRDF+EV    
Sbjct: 181 LEFYKVEDLQYIVSRSAQCLGLDLTSEGALEVARRARGTPRIANRLLRRVRDFSEVKSEG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT ++A  AL  LA+D  GFD +D + L  I   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 AITGDVATQALDMLAVDSEGFDYMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           +EP++IQQGFIQRTPRGR+    A++H G+
Sbjct: 301 LEPFLIQQGFIQRTPRGRMATQHAYRHFGL 330


>gi|89075788|ref|ZP_01162176.1| Holliday junction DNA helicase RuvB [Photobacterium sp. SKA34]
 gi|89048520|gb|EAR54095.1| Holliday junction DNA helicase RuvB [Photobacterium sp. SKA34]
          Length = 339

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 194/336 (57%), Positives = 254/336 (75%), Gaps = 3/336 (0%)

Query: 1   MMDREGLLSRN--VSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M++ + L+S N   ++ED  I   +RP+ L+++ GQ      +++FI+AAK R EALDH+
Sbjct: 1   MIEADRLVSGNFETTREDDIIDRAIRPKLLDDYQGQDHVRDQMEIFIKAAKMRDEALDHL 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTLA +VA E+GV+ R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRL
Sbjct: 61  LIFGPPGLGKTTLANIVANEMGVSIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           S  VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI 
Sbjct: 121 SPQVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIT 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            RL +Y++EDLK IV R AK  GL++ +  A E+AMR+RGTPRIA RLLRRVRD+AEV  
Sbjct: 181 QRLEYYKVEDLKDIVGRSAKCLGLSMEEGGAMEMAMRARGTPRIANRLLRRVRDYAEVKG 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
              I  +IA+ AL  L +D  GFD +D + L  I   F GGPVG++ ++A + E +D IE
Sbjct: 241 NGHICPDIANKALDMLDVDSSGFDYMDRKLLLAIIEKFMGGPVGLDNLAAAIGEEKDTIE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           D++EPY+IQQG++QRTPRGR+    A+ H G+D+P 
Sbjct: 301 DVLEPYLIQQGYLQRTPRGRIATHRAYLHFGLDLPE 336


>gi|325929362|ref|ZP_08190492.1| Holliday junction DNA helicase subunit RuvB [Xanthomonas perforans
           91-118]
 gi|325540274|gb|EGD11886.1| Holliday junction DNA helicase subunit RuvB [Xanthomonas perforans
           91-118]
          Length = 346

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 192/332 (57%), Positives = 248/332 (74%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M ++  + S +  ++DA  + +RP+ L ++ GQ      ++++I+AAKAR EA+DHVL  
Sbjct: 1   MTEQRIIASSSTREDDAADASIRPKRLADYLGQQPVREQMEIYIQAAKARGEAMDHVLIF 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTL+ V+A ELGV+ R TSGPVI KAGDLAALLTNL+  DVLFIDEIHRLS +
Sbjct: 61  GPPGLGKTTLSHVIANELGVSLRVTSGPVIEKAGDLAALLTNLQPHDVLFIDEIHRLSPV 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDFQ+D+M+G+GP+ARS+KI+L  FTLI ATTR GLLT PL+DRFGI  RL
Sbjct: 121 VEEVLYPAMEDFQIDIMIGDGPAARSIKIDLPPFTLIGATTRAGLLTAPLRDRFGIVQRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  ++L  IV R A + G+  T E A EIA R+RGTPRI  RLLRRVRD+A+V  A  
Sbjct: 181 EFYSPQELTRIVIRSAAILGIDCTPEGAAEIARRARGTPRIGNRLLRRVRDYAQVKAAGH 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I   +A AA+  L +D  GFD+LD R L  I  +F GGPVG+E+++A LSE R  +ED+I
Sbjct: 241 IDLPVAQAAMQMLKVDPEGFDELDRRMLRTIVEHFDGGPVGVESLAASLSEERGTLEDVI 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EPY+IQQGF+ RT RGR++ P A+ HLG+ +P
Sbjct: 301 EPYLIQQGFLIRTARGRMVTPKAYLHLGLKVP 332


>gi|330950608|gb|EGH50868.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae Cit 7]
          Length = 353

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 189/313 (60%), Positives = 240/313 (76%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP +L ++ GQ      +++FI+AA+ R+EALDH L  GPPGLGKTTLA ++A+E+GV+
Sbjct: 24  IRPLSLADYIGQPTVREQMELFIQAARGRSEALDHTLIFGPPGLGKTTLANIIAQEMGVS 83

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            +STSGPV+ + GDLAA+LTNLE  DVLFIDEIHRLS IVEE+LYPAMEDFQLD+M+GEG
Sbjct: 84  IKSTSGPVLERPGDLAAILTNLEPNDVLFIDEIHRLSPIVEEVLYPAMEDFQLDIMIGEG 143

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY I DL TIV R A + GL
Sbjct: 144 PAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQRLEFYNIADLSTIVSRSAGILGL 203

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  + A EIA R+RGTPRIA RLLRRVRDFAEV     ITR+ AD AL  L +D+ GFD
Sbjct: 204 VIEPQGAFEIARRARGTPRIANRLLRRVRDFAEVRGNGQITRQTADKALNLLDVDEHGFD 263

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             D R L  +   F GGPVGI++++A +SE R  IED++EPY+IQQG+I RTPRGR++  
Sbjct: 264 HQDRRLLLTMIEKFDGGPVGIDSLAAAISEERHTIEDVLEPYLIQQGYIMRTPRGRVVTR 323

Query: 322 IAWQHLGIDIPHR 334
            A+ H G++IP R
Sbjct: 324 HAYLHFGLNIPSR 336


>gi|83718669|ref|YP_441794.1| Holliday junction DNA helicase RuvB [Burkholderia thailandensis
           E264]
 gi|167580614|ref|ZP_02373488.1| Holliday junction DNA helicase B [Burkholderia thailandensis TXDOH]
 gi|167618720|ref|ZP_02387351.1| Holliday junction DNA helicase B [Burkholderia thailandensis Bt4]
 gi|257137960|ref|ZP_05586222.1| Holliday junction DNA helicase RuvB [Burkholderia thailandensis
           E264]
 gi|97189952|sp|Q2SZ55|RUVB_BURTA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|83652494|gb|ABC36557.1| Holliday junction DNA helicase RuvB [Burkholderia thailandensis
           E264]
          Length = 356

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 196/320 (61%), Positives = 242/320 (75%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           S E+A    LRPR L+E+ GQ +    L++FIEAAK RAEALDHVL  GPPGLGKTTLA 
Sbjct: 20  SHEEAFERALRPRQLDEYVGQEKVRDQLEIFIEAAKRRAEALDHVLLFGPPGLGKTTLAH 79

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++ARE+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+
Sbjct: 80  IIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDY 139

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           Q+D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY+ E L  IV
Sbjct: 140 QIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYDAEQLSRIV 199

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           +R A L    +    A EIA RSRGTPRIA RLLRRVRD+AEV     IT  +ADAAL  
Sbjct: 200 RRSAALLNAQIDPAGALEIAKRSRGTPRIANRLLRRVRDYAEVKADGNITAAVADAALAM 259

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D +GFD +D + L  I   F GGPVG++ ++A + E RD IED++EPY+IQQGF+QR
Sbjct: 260 LDVDPVGFDLMDRKLLEAILHKFDGGPVGVDNLAAAIGEERDTIEDVLEPYLIQQGFLQR 319

Query: 313 TPRGRLLMPIAWQHLGIDIP 332
           TPRGR+   + ++H G+  P
Sbjct: 320 TPRGRVATLLTYRHFGLATP 339


>gi|7443650|pir||JC5477 DNA-binding protein ruvB - Pseudomonas aeruginosa
          Length = 352

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 191/313 (61%), Positives = 237/313 (75%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  L ++ GQ      +++FI AA+ R EALDH L  GPPGLGKTTLA ++A+E+GV+
Sbjct: 24  IRPLKLADYIGQPSVREQMELFIHAARGRQEALDHTLIFGPPGLGKTTLANIIAQEMGVS 83

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            +STSGPV+ + GDLAALLTNLE  DVLF+DEIHRLS IVEE+LYPAMEDFQLD+M+GEG
Sbjct: 84  IKSTSGPVLERPGDLAALLTNLEAGDVLFVDEIHRLSPIVEEVLYPAMEDFQLDIMIGEG 143

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ RS+K++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY +EDL TIV R A + GL
Sbjct: 144 PAVRSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQRLEFYNVEDLATIVSRSAGILGL 203

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  + A EIA R+RGTPRIA RLLRRVRDFAEV     ITR IAD AL  L +D+ GFD
Sbjct: 204 EIEPQGAAEIAKRARGTPRIANRLLRRVRDFAEVRGQGDITRVIADKALNLLDVDERGFD 263

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            LD R L  +   F GGPVGI+ ++A LSE R  IED++EPY+IQQG+I RTPRGR++  
Sbjct: 264 HLDRRLLLTMIDKFDGGPVGIDNLAAALSEERHTIEDVLEPYLIQQGYIMRTPRGRVVTR 323

Query: 322 IAWQHLGIDIPHR 334
            A+ H G++IP R
Sbjct: 324 HAYLHFGLNIPKR 336


>gi|323495171|ref|ZP_08100256.1| Holliday junction DNA helicase RuvB [Vibrio brasiliensis LMG 20546]
 gi|323310611|gb|EGA63790.1| Holliday junction DNA helicase RuvB [Vibrio brasiliensis LMG 20546]
          Length = 334

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 188/318 (59%), Positives = 240/318 (75%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
            +ED     +RP+ L ++ GQ      +++FI+AA+ R EALDH+L  GPPGLGKTTLA 
Sbjct: 16  KEEDVIDRAIRPKKLADYQGQDHVRDQMEIFIKAAQLRNEALDHLLIFGPPGLGKTTLAN 75

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           +VA E+ VN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS +VEE+LYPAMED+
Sbjct: 76  IVANEMDVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDY 135

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  RL +Y+I DL+ IV
Sbjct: 136 QLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGITQRLEYYKIPDLQNIV 195

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           QR A   GL++  E A E+A R+RGTPRIA RLLRRVRD+AEV     I  E+AD AL  
Sbjct: 196 QRSADCLGLSMESEGALEVARRARGTPRIANRLLRRVRDYAEVKGNGHICAEVADKALNM 255

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D  GFD +D + L  I   FGGGPVG++ ++A + E +D IED++EPY+IQQG++QR
Sbjct: 256 LDVDAQGFDYMDRKLLLAIMEKFGGGPVGLDNMAAAIGEEKDTIEDVLEPYLIQQGYLQR 315

Query: 313 TPRGRLLMPIAWQHLGID 330
           TPRGR+    A+ H GI+
Sbjct: 316 TPRGRIATDRAYLHFGIE 333


>gi|330445533|ref|ZP_08309185.1| Holliday junction DNA helicase RuvB [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328489724|dbj|GAA03682.1| Holliday junction DNA helicase RuvB [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 339

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 193/336 (57%), Positives = 253/336 (75%), Gaps = 3/336 (0%)

Query: 1   MMDREGLLSRN--VSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M++ + L+S N   ++ED  I   +RP+ L+++ GQ      +++FI+AAK R EALDH+
Sbjct: 1   MIEADRLVSGNFETTREDDIIDRAIRPKLLDDYQGQDHVRDQMEIFIKAAKLRDEALDHL 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTLA +VA E+GV+ R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRL
Sbjct: 61  LIFGPPGLGKTTLANIVANEMGVSIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           S  VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI 
Sbjct: 121 SPQVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIT 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            RL +Y++EDLK IV R A   GL++ +  A E+AMR+RGTPRIA RLLRRVRD+AEV  
Sbjct: 181 QRLEYYKVEDLKDIVSRSANCLGLSMEEAGALEVAMRARGTPRIANRLLRRVRDYAEVKG 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
              I  +IA+ AL  L +D  GFD +D + L  I   F GGPVG++ ++A + E +D IE
Sbjct: 241 NGHICPDIANKALDMLDVDSSGFDYMDRKLLLAIIEKFMGGPVGLDNLAAAIGEEKDTIE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           D++EPY+IQQG++QRTPRGR+    A+ H G+D+P 
Sbjct: 301 DVLEPYLIQQGYLQRTPRGRIATHRAYLHFGLDLPE 336


>gi|302187156|ref|ZP_07263829.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv.
           syringae 642]
          Length = 353

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 189/313 (60%), Positives = 240/313 (76%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP +L ++ GQ      +++FI+AA+ R+EALDH L  GPPGLGKTTLA ++A+E+GV+
Sbjct: 24  IRPLSLADYIGQPTVREQMELFIQAARGRSEALDHTLIFGPPGLGKTTLANIIAQEMGVS 83

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            +STSGPV+ + GDLAA+LTNLE  DVLFIDEIHRLS IVEE+LYPAMEDFQLD+M+GEG
Sbjct: 84  IKSTSGPVLERPGDLAAILTNLEPNDVLFIDEIHRLSPIVEEVLYPAMEDFQLDIMIGEG 143

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY I DL TIV R A + GL
Sbjct: 144 PAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQRLEFYNIADLSTIVSRSAGILGL 203

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  + A EIA R+RGTPRIA RLLRRVRDFAEV     ITR+ AD AL  L +D+ GFD
Sbjct: 204 VIEPQGAFEIARRARGTPRIANRLLRRVRDFAEVRGNGQITRQTADKALNLLDVDEHGFD 263

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             D R L  +   F GGPVGI++++A +SE R  IED++EPY+IQQG+I RTPRGR++  
Sbjct: 264 HQDRRLLLTMIEKFDGGPVGIDSLAAAISEERHTIEDVLEPYLIQQGYIMRTPRGRVVTR 323

Query: 322 IAWQHLGIDIPHR 334
            A+ H G++IP R
Sbjct: 324 HAYLHFGLNIPSR 336


>gi|264680419|ref|YP_003280329.1| Holliday junction DNA helicase RuvB [Comamonas testosteroni CNB-2]
 gi|262210935|gb|ACY35033.1| Holliday junction DNA helicase RuvB [Comamonas testosteroni CNB-2]
          Length = 364

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 190/311 (61%), Positives = 234/311 (75%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L+E+ GQ +A   L++FI AAK R+EALDHVL  GPPGLGKTTL+ ++A ELGVN
Sbjct: 49  LRPKQLDEYVGQAKAREQLEIFIGAAKKRSEALDHVLLFGPPGLGKTTLSHIIAAELGVN 108

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGPV+ K  DLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+Q+D+M+GEG
Sbjct: 109 LRQTSGPVLEKPKDLAALLTNLEPNDVLFIDEIHRLSPVVEEILYPALEDYQIDIMIGEG 168

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  E+L  IV+R A L   
Sbjct: 169 PAARSIKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTSEELSRIVRRSAGLLNA 228

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  E   EIA RSRGTPRIA RLLRRVRD+A+V     ITREIAD AL  L +D  GFD
Sbjct: 229 PIDAEGCFEIARRSRGTPRIANRLLRRVRDYADVKGDGRITREIADKALAMLDVDPQGFD 288

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   F GGPVG++ I+A + E    IED+IEPY+IQQGF+QRTPRGR+   
Sbjct: 289 IMDRKLLEAVVHRFDGGPVGLDNIAASIGEESGTIEDVIEPYLIQQGFLQRTPRGRMATQ 348

Query: 322 IAWQHLGIDIP 332
            A++HLG+  P
Sbjct: 349 AAYRHLGLQPP 359


>gi|237809450|ref|YP_002893890.1| Holliday junction DNA helicase RuvB [Tolumonas auensis DSM 9187]
 gi|259495681|sp|C4LBN0|RUVB_TOLAT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|237501711|gb|ACQ94304.1| Holliday junction DNA helicase RuvB [Tolumonas auensis DSM 9187]
          Length = 337

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 189/323 (58%), Positives = 245/323 (75%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +++E+     +RP+ L ++ GQ +  S +++FIEAA+ R+EALDHVL  GPPGLGKTTLA
Sbjct: 13  ITEEEQLDRAIRPKMLSDYRGQDQVRSQMEIFIEAARRRSEALDHVLIFGPPGLGKTTLA 72

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            +VA E+GVN ++TSGPV+ KAGDLAALLTNLE  DVLFIDEIHRLS +VEE+LYPAMED
Sbjct: 73  NIVANEMGVNIKTTSGPVLEKAGDLAALLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMED 132

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           +QLD+M+GEGP+ARS+K+ L  FTLI ATTR G LT+PL+DRFGI  RL FY++EDL  I
Sbjct: 133 YQLDIMIGEGPAARSIKLELPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYKVEDLAHI 192

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           V R A + GL++  + A EIA R+RGTPRIA RLLRRVRDFAE+     I+ +IA  AL 
Sbjct: 193 VGRSADVLGLSLDQQGAFEIAKRARGTPRIANRLLRRVRDFAEIRSDGHISDQIAAQALD 252

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L +D  GFD +D + L  I   F GGPVG++ ++A + E ++ IED++EPY+IQQGF+Q
Sbjct: 253 MLDVDNAGFDYMDRKLLLAIIDKFLGGPVGVDNLAAAIGEEKETIEDVLEPYLIQQGFLQ 312

Query: 312 RTPRGRLLMPIAWQHLGIDIPHR 334
           RTPRGR+  P A+ H G+  P R
Sbjct: 313 RTPRGRIATPRAYLHFGLTTPER 335


>gi|148263481|ref|YP_001230187.1| Holliday junction DNA helicase RuvB [Geobacter uraniireducens Rf4]
 gi|189046034|sp|A5G9Y2|RUVB_GEOUR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|146396981|gb|ABQ25614.1| Holliday junction DNA helicase subunit RuvB [Geobacter
           uraniireducens Rf4]
          Length = 338

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 189/327 (57%), Positives = 249/327 (76%), Gaps = 1/327 (0%)

Query: 8   LSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           ++ +++ +DA I + LRPR L+++ GQ +A  NL++FI+AA+ R EALDHVL  GPPGLG
Sbjct: 5   ITPSITDDDALIEATLRPRALDDYVGQEKAKGNLRIFIDAARGRDEALDHVLLYGPPGLG 64

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTTLA ++A E+GVN +STSGPVI + GDLAA+LTNLE  DVLFIDEIHRLS +VEEILY
Sbjct: 65  KTTLANIIACEMGVNIKSTSGPVIERPGDLAAILTNLEAHDVLFIDEIHRLSHVVEEILY 124

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           PAMEDFQLD+++G+GPSAR++K++L +FTL+ ATTR GLL++PL+DRFG+  RL FY  E
Sbjct: 125 PAMEDFQLDIIIGQGPSARTIKLDLPKFTLVGATTRAGLLSSPLRDRFGVISRLEFYTDE 184

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +L  I+ R A++ G+ +  + A E+A RSRGTPRIA RLLRRVRDFA+V     IT ++ 
Sbjct: 185 ELAFIITRSARILGMEIKTDGAAEMARRSRGTPRIANRLLRRVRDFAQVKADGVITMKVV 244

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
             AL  L ID+MGFDQ+D   L  I   FGGGPVG++TI+A +SE  D IED+ EP++IQ
Sbjct: 245 QDALALLEIDEMGFDQMDRMILLTIIDKFGGGPVGLDTIAAAISEESDTIEDVYEPFLIQ 304

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            GF+ RTPRGR+    A+ H G  +P 
Sbjct: 305 NGFLNRTPRGRVATKAAYLHFGRIVPE 331


>gi|325579042|ref|ZP_08148998.1| crossover junction ATP-dependent DNA helicase RuvB [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325159277|gb|EGC71411.1| crossover junction ATP-dependent DNA helicase RuvB [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 335

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 190/333 (57%), Positives = 247/333 (74%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + ++S  V   ED     +RP+ L ++ GQ +    + +FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRIISSQVKMDEDVIDRAIRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            +EE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 AIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY +EDL +IV R A    L + D+AA E+A RSRGTPRIA RLLRRVRDFA+V +  
Sbjct: 181 LEFYSVEDLTSIVTRSASCLNLELEDKAAFEVARRSRGTPRIANRLLRRVRDFADVRNDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I+ +IA  AL  L +D  GFD LD + LT +   F GGPVG++ ++A + E RD IED+
Sbjct: 241 IISADIAKQALSMLDVDDAGFDYLDRKLLTAVIERFDGGPVGLDNLAAAIGEERDTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           +EPY+IQQGF+QRTPRGR+   + ++H G+  P
Sbjct: 301 LEPYLIQQGFLQRTPRGRIATSLTYRHFGLQKP 333


>gi|312882587|ref|ZP_07742327.1| Holliday junction DNA helicase RuvB [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309369747|gb|EFP97259.1| Holliday junction DNA helicase RuvB [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 334

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 189/322 (58%), Positives = 243/322 (75%), Gaps = 2/322 (0%)

Query: 11  NVSQEDADI--SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           N   +D D+    +RP+ L ++ GQ      +++FI+AA+ R+EALDH+L  GPPGLGKT
Sbjct: 12  NTVYKDEDVIDRAIRPKKLADYQGQDHVRDQMEIFIKAAQMRSEALDHLLIFGPPGLGKT 71

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           TLA +VA E+ VN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS +VEE+LYPA
Sbjct: 72  TLANIVANEMEVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPA 131

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           MED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  RL +Y+I DL
Sbjct: 132 MEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGITQRLEYYKISDL 191

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +TIVQR A   GL++  E A E+A R+RGTPRIA RLLRRVRD+AEV     I  +IAD 
Sbjct: 192 QTIVQRSADCLGLSMEAEGALEVARRARGTPRIANRLLRRVRDYAEVKGNGHICADIADK 251

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL  L +D  GFD +D + L  I   F GGPVG++ ++A + E +D IED++EPY+IQQG
Sbjct: 252 ALNMLDVDAQGFDYMDRKLLLAIMEKFSGGPVGLDNMAAAIGEEKDTIEDVLEPYLIQQG 311

Query: 309 FIQRTPRGRLLMPIAWQHLGID 330
           ++QRTPRGR+    A+ H GI+
Sbjct: 312 YLQRTPRGRIATDRAYLHFGIE 333


>gi|330936717|gb|EGH40904.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 353

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 188/313 (60%), Positives = 240/313 (76%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP +L ++ GQ      +++FI+AA+ R+EALDH L  GPPGLGKTTLA ++A+E+GV+
Sbjct: 24  IRPLSLADYIGQSTVREQMELFIQAARGRSEALDHTLIFGPPGLGKTTLANIIAQEMGVS 83

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            +STSGPV+ + GDLAA+LTNLE  DVLFIDEIHRLS IVEE+LYPAMEDFQLD+M+GEG
Sbjct: 84  IKSTSGPVLERPGDLAAILTNLEPNDVLFIDEIHRLSPIVEEVLYPAMEDFQLDIMIGEG 143

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY I DL TIV R A + GL
Sbjct: 144 PAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQRLEFYNIADLSTIVSRSAGILGL 203

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  + A EIA R+RGTPRIA RLLRRVRDFAEV     ITR+ AD AL  L +D+ GFD
Sbjct: 204 VIEPQGAFEIARRARGTPRIANRLLRRVRDFAEVRGNGQITRQTADKALNLLDVDEHGFD 263

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             D R L  +   F GGPVG+++++A +SE R  IED++EPY+IQQG+I RTPRGR++  
Sbjct: 264 HQDRRLLLTMIEKFDGGPVGVDSLAAAISEERHTIEDVLEPYLIQQGYIMRTPRGRVVTR 323

Query: 322 IAWQHLGIDIPHR 334
            A+ H G++IP R
Sbjct: 324 HAYLHFGLNIPSR 336


>gi|332285260|ref|YP_004417171.1| holliday junction DNA helicase [Pusillimonas sp. T7-7]
 gi|330429213|gb|AEC20547.1| holliday junction DNA helicase [Pusillimonas sp. T7-7]
          Length = 339

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 192/319 (60%), Positives = 233/319 (73%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
            ED+    LRPR L+E+ GQ      L++FI AAK R EALDHVL  GPPGLGKTTLA +
Sbjct: 9   NEDSIERALRPRELKEYIGQHRVREQLEIFIAAAKNRGEALDHVLLFGPPGLGKTTLAHI 68

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           VA E+GV  R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+EDFQ
Sbjct: 69  VAHEMGVQLRQTSGPVLERAGDLAALLTNLEKNDVLFIDEIHRLSPVVEEILYPALEDFQ 128

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           +D+++GEGP+ARSVKI+L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  EDL  IV 
Sbjct: 129 IDILIGEGPAARSVKIDLQPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYNTEDLTHIVT 188

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A+L     T + A EIA R+RGTPRIA RLLRRVRD+AEV     I   +A AAL  L
Sbjct: 189 RSAQLLNAHTTPDGAAEIARRARGTPRIANRLLRRVRDYAEVRADGNIDTTVAGAALAML 248

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D  G D +D + L  I   F GGPVG+++++A + E RD IED+IEP++IQQG++QRT
Sbjct: 249 EVDPQGLDLMDRKLLEAIIHKFDGGPVGVDSLAAAIGEERDTIEDVIEPFLIQQGYLQRT 308

Query: 314 PRGRLLMPIAWQHLGIDIP 332
           PRGR      W+HLG+  P
Sbjct: 309 PRGRTATQTTWRHLGLTPP 327


>gi|261378742|ref|ZP_05983315.1| holliday junction DNA helicase RuvB [Neisseria cinerea ATCC 14685]
 gi|269144897|gb|EEZ71315.1| holliday junction DNA helicase RuvB [Neisseria cinerea ATCC 14685]
          Length = 343

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 195/319 (61%), Positives = 243/319 (76%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           SQE+     LRP+TL+++ GQ +A   L +FI+AAK R EALDH L  GPPGLGKTTLA 
Sbjct: 23  SQEELLERALRPKTLDDYIGQDKAKEQLAIFIQAAKKRGEALDHTLLFGPPGLGKTTLAH 82

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++A+ELGVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+
Sbjct: 83  IIAKELGVNLRQTSGPVLERAGDLAALLTNLEPHDVLFIDEIHRLSPVVEEILYPALEDY 142

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           QLD+M+GEGP+ARSVKI+L  FTL+ ATTR G+LTNPL+DRFGI  RL FY+ +DL TIV
Sbjct: 143 QLDIMIGEGPAARSVKIDLPPFTLVGATTRAGMLTNPLRDRFGIVARLEFYQNQDLATIV 202

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R A+L  L + +E A E+A RSRGTPRIA RLLRRVRDFA+V +   I   +ADAAL  
Sbjct: 203 SRSAQLLQLDMGEEGAMEVAKRSRGTPRIANRLLRRVRDFADVKNNGVIDAAVADAALSM 262

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D  G D +D ++L  I   F GGPVG++ ++A + E  D IED+IEPY+IQQGF+QR
Sbjct: 263 LDVDAQGLDVMDRKFLEAILHKFSGGPVGLDNVAAAIGESTDTIEDVIEPYLIQQGFLQR 322

Query: 313 TPRGRLLMPIAWQHLGIDI 331
           TPRGR+    A+ H G+ +
Sbjct: 323 TPRGRVATERAYLHFGLPV 341


>gi|251789855|ref|YP_003004576.1| Holliday junction DNA helicase RuvB [Dickeya zeae Ech1591]
 gi|247538476|gb|ACT07097.1| Holliday junction DNA helicase RuvB [Dickeya zeae Ech1591]
          Length = 336

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 190/322 (59%), Positives = 243/322 (75%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           VS E+     +RP+ L E+ GQ      +++FIEAA+ R +ALDH+L  GPPGLGKTTLA
Sbjct: 13  VSDEEVLDRAIRPKLLSEYVGQPVVREQMEIFIEAARKRGDALDHLLIFGPPGLGKTTLA 72

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            +VA E+GVN R+TSGPV+ KAGDLAALLTNLE  DVLFIDEIHRLS +VEE+LYPAMED
Sbjct: 73  NIVANEMGVNLRTTSGPVLEKAGDLAALLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMED 132

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           +QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  RL FY++ DL+ I
Sbjct: 133 YQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVADLQHI 192

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           VQR A+  GL +T + A E+A RSRGTPRIA RLLRRVRDF+EV     I+ E+A  AL 
Sbjct: 193 VQRSAQCLGLEMTVDGALEVARRSRGTPRIANRLLRRVRDFSEVKSDGAISAEVAIQALD 252

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            LA+D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED++EPY+IQQGF+Q
Sbjct: 253 MLAVDSEGFDYMDRKLLLAVIDKFMGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQ 312

Query: 312 RTPRGRLLMPIAWQHLGIDIPH 333
           RTPRGR+    A++H G+   H
Sbjct: 313 RTPRGRIATQHAYRHFGLTREH 334


>gi|149191832|ref|ZP_01870069.1| Holliday junction DNA helicase B [Vibrio shilonii AK1]
 gi|148834350|gb|EDL51350.1| Holliday junction DNA helicase B [Vibrio shilonii AK1]
          Length = 335

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 190/316 (60%), Positives = 238/316 (75%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           ED     +RP+ L ++ GQ      +++FI+AA+ R EALDH+L  GPPGLGKTTLA +V
Sbjct: 18  EDVIDRAIRPKKLADYEGQEHVSDQMEIFIKAAQLRNEALDHLLIFGPPGLGKTTLANIV 77

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A E+ VN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS +VEE+LYPAMED+QL
Sbjct: 78  ANEMEVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQL 137

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  RL +Y+I DL+ IVQR
Sbjct: 138 DIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEYYKIADLQKIVQR 197

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A   GL++  E A EIA R+RGTPRIA RLLRRVRD+AEV     I  +IAD AL  L 
Sbjct: 198 SASCLGLSMEPEGALEIARRARGTPRIANRLLRRVRDYAEVKGNGHICADIADKALNMLD 257

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D  GFD +D + L  I   F GGPVG++ ++A + E +D IED+IEPY+IQQG++QRTP
Sbjct: 258 VDHQGFDYMDRKLLLAIMEKFAGGPVGLDNLAAAIGEEKDTIEDVIEPYLIQQGYLQRTP 317

Query: 315 RGRLLMPIAWQHLGID 330
           RGR+    A+ H GID
Sbjct: 318 RGRIASDRAYLHFGID 333


>gi|254228969|ref|ZP_04922390.1| holliday junction DNA helicase RuvB [Vibrio sp. Ex25]
 gi|151938437|gb|EDN57274.1| holliday junction DNA helicase RuvB [Vibrio sp. Ex25]
          Length = 361

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 189/316 (59%), Positives = 241/316 (76%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           ED     +RP+ L ++ GQ      +++FI+AA+ R+EALDH+L  GPPGLGKTTLA +V
Sbjct: 45  EDVIDRAIRPKKLADYQGQDHVRDQMEIFIKAAQLRSEALDHLLIFGPPGLGKTTLANIV 104

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A E+ VN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS +VEE+LYPAMED+QL
Sbjct: 105 ANEMEVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQL 164

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  RL FY+I+DL+ IVQR
Sbjct: 165 DIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGITQRLEFYKIKDLQDIVQR 224

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A   GL++  E A E+A R+RGTPRIA RLLRRVRD+AEV     I  E+AD AL  L 
Sbjct: 225 SADCLGLSMEPEGALEVARRARGTPRIANRLLRRVRDYAEVKGNGHICAEVADKALNMLD 284

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D  GFD +D + L  I   FGGGPVG++ ++A + E +D IED++EPY+IQQG++QRTP
Sbjct: 285 VDAEGFDYMDRKLLLAIMEKFGGGPVGLDNMAAAIGEEKDTIEDVLEPYLIQQGYLQRTP 344

Query: 315 RGRLLMPIAWQHLGID 330
           RGR+    A+ H GI+
Sbjct: 345 RGRIATDRAYLHFGIE 360


>gi|311694931|gb|ADP97804.1| Holliday junction ATP-dependent DNA helicase RuvB [marine bacterium
           HP15]
          Length = 347

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 192/334 (57%), Positives = 247/334 (73%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLS-RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S R    E+     +RP  L E+ GQ      + +FI AA+ R EALDHVL 
Sbjct: 5   MIESDRLISARAGEYEEVQDRAIRPTLLAEYVGQPTVREQMDIFISAARGRQEALDHVLI 64

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A E+GV+ ++TSGPV+ KAGDLAA+LTNLE+ DVLFIDEIHRLS 
Sbjct: 65  FGPPGLGKTTLANIIANEMGVSIKTTSGPVLEKAGDLAAMLTNLEEGDVLFIDEIHRLSA 124

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ ATTR GLLT+PL+DRFGI  R
Sbjct: 125 AVEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGLLTSPLRDRFGIVQR 184

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY  EDL +I+ R A+L+ +AV +  A EIA RSRGTPRIA RLLRRVRDFAEV    
Sbjct: 185 LEFYNTEDLTSIILRSARLSSVAVDEAGAFEIARRSRGTPRIANRLLRRVRDFAEVRSDG 244

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT +IAD AL  L +D  GFD +D R L  +   F GGPVG+E+++A +SE R  IED+
Sbjct: 245 RITSDIADQALNMLKVDNQGFDHMDRRLLLAMIEKFDGGPVGVESLAAAISEERGTIEDV 304

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +EP++IQQG++ RTPRGR++   A+QH G+  P 
Sbjct: 305 LEPFLIQQGYMVRTPRGRMVTSNAYQHFGVIPPK 338


>gi|167837836|ref|ZP_02464719.1| Holliday junction DNA helicase B [Burkholderia thailandensis
           MSMB43]
          Length = 356

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 196/320 (61%), Positives = 242/320 (75%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           S E+A    LRPR L+E+ GQ +    L++FIEAAK RAEALDHVL  GPPGLGKTTLA 
Sbjct: 20  SHEEAFERALRPRQLDEYVGQEKVRDQLEIFIEAAKRRAEALDHVLLFGPPGLGKTTLAH 79

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++ARE+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+
Sbjct: 80  IIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDY 139

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           Q+D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY+ E L  IV
Sbjct: 140 QIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYDAEQLSRIV 199

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           +R A L    +    A EIA RSRGTPRIA RLLRRVRD+AEV     IT  +ADAAL  
Sbjct: 200 RRSAALLNAQIDPAGALEIAKRSRGTPRIANRLLRRVRDYAEVKADGNITAAVADAALAM 259

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D +GFD +D + L  I   F GGPVG++ ++A + E RD IED++EPY+IQQGF+QR
Sbjct: 260 LDVDPVGFDLMDRKLLEAILHKFDGGPVGVDNLAAAIGEERDTIEDVLEPYLIQQGFLQR 319

Query: 313 TPRGRLLMPIAWQHLGIDIP 332
           TPRGR+   + ++H G+  P
Sbjct: 320 TPRGRVATLLTYRHFGLAAP 339


>gi|315498697|ref|YP_004087501.1| holliday junction DNA helicase ruvb [Asticcacaulis excentricus CB
           48]
 gi|315416709|gb|ADU13350.1| Holliday junction DNA helicase RuvB [Asticcacaulis excentricus CB
           48]
          Length = 347

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 191/311 (61%), Positives = 247/311 (79%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP++ ++F GQ    +NLK+F++AA AR EALDHVLF GPPGLGKTTLAQ+V++EL V 
Sbjct: 23  LRPQSFDDFVGQAPLKANLKIFVQAAAARKEALDHVLFYGPPGLGKTTLAQIVSKELKVG 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           FR+TSGP++AKAGDLAA+L+NLE  DVLFIDEIHRLS  VEEILYPAMED+ LDL++G+G
Sbjct: 83  FRATSGPMLAKAGDLAAILSNLEPNDVLFIDEIHRLSPQVEEILYPAMEDYVLDLIIGDG 142

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+AR+V+I+L  FTL+ ATTR GLL+ PL+DRFGIP+RL FY  E+L  +V    +  G 
Sbjct: 143 PAARTVRIDLVPFTLVGATTRAGLLSQPLRDRFGIPLRLEFYTPEELVRVVMGTGRKMGA 202

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            ++++ A E+A RSRGTPR+AGRLLRRVRDFA    A+ I +++A  AL RL +D  G D
Sbjct: 203 VLSEDGAFEVASRSRGTPRVAGRLLRRVRDFATAEGAEIIDKKVASRALARLEVDPSGLD 262

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           QLD RYL  +  N+ GGPVG+ETI+A ++E RDA+ED+IEPY++QQGFIQRTPRGR+   
Sbjct: 263 QLDRRYLAAMIENYNGGPVGLETIAAAIAEARDAVEDMIEPYLMQQGFIQRTPRGRMACA 322

Query: 322 IAWQHLGIDIP 332
            A+ HLG++ P
Sbjct: 323 RAYTHLGLNPP 333


>gi|205352400|ref|YP_002226201.1| Holliday junction DNA helicase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207856585|ref|YP_002243236.1| Holliday junction DNA helicase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|205272181|emb|CAR37039.1| Holliday junction DNA helicase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|206708388|emb|CAR32692.1| Holliday junction DNA helicase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|261247065|emb|CBG24884.1| Holliday junction DNA helicase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|301158415|emb|CBW17922.1| Holliday junction DNA helicase ruvB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
          Length = 309

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 187/306 (61%), Positives = 236/306 (77%)

Query: 27  LEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTS 86
           + E+ GQ +  S +++FI+AAK R +ALDH+L  GPPGLGKTTLA +VA E+GVN R+TS
Sbjct: 1   MAEYVGQPQVRSQMEIFIQAAKRRGDALDHLLIFGPPGLGKTTLANIVANEMGVNLRTTS 60

Query: 87  GPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARS 146
           GPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS +VEE+LYPAMED+QLD+M+GEGP+ARS
Sbjct: 61  GPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARS 120

Query: 147 VKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDE 206
           +KI+L  FTLI ATTR G LT+PL+DRFGI  RL FY++ DL+ IV R A+  GL ++D+
Sbjct: 121 IKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQHIVGRSARHMGLEMSDD 180

Query: 207 AACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLR 266
            A E+A R+RGTPRIA RLLRRVRDFAEV H   I+ EIA  AL  L +D  GFD +D +
Sbjct: 181 GALEVARRARGTPRIANRLLRRVRDFAEVKHDGAISAEIAAQALDMLNVDAEGFDYMDRK 240

Query: 267 YLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQH 326
            L  +   F GGPVG++ ++A + E R+ IED++EPY+IQQGF+QRTPRGR+    AW H
Sbjct: 241 LLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMATVRAWNH 300

Query: 327 LGIDIP 332
            GI  P
Sbjct: 301 FGITPP 306


>gi|237800219|ref|ZP_04588680.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331023076|gb|EGI03133.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 353

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 188/313 (60%), Positives = 240/313 (76%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP +L ++ GQ      +++FI+AA+ R+EALDH L  GPPGLGKTTLA ++A+E+GV+
Sbjct: 24  IRPLSLADYIGQPTVREQMELFIQAARGRSEALDHTLIFGPPGLGKTTLANIIAQEMGVS 83

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            +STSGPV+ + GDLAA+LTNLE  DVLFIDEIHRLS IVEE+LYPAMEDFQLD+M+GEG
Sbjct: 84  IKSTSGPVLERPGDLAAILTNLEPNDVLFIDEIHRLSPIVEEVLYPAMEDFQLDIMIGEG 143

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY I DL TIV R A + GL
Sbjct: 144 PAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQRLEFYNIADLSTIVSRSAGILGL 203

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  + A EIA R+RGTPRIA RLLRRVRDFAEV     ITR+ AD AL  L +D+ GFD
Sbjct: 204 VIEPQGAFEIARRARGTPRIANRLLRRVRDFAEVRGNGQITRQTADKALNLLDVDEHGFD 263

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             D R L  +   F GGPVG+++++A +SE R  IED++EPY+IQQG+I RTPRGR++  
Sbjct: 264 HQDRRLLLTMIEKFDGGPVGVDSLAAAISEERHTIEDVLEPYLIQQGYIMRTPRGRVVTR 323

Query: 322 IAWQHLGIDIPHR 334
            A+ H G++IP R
Sbjct: 324 HAYLHFGLNIPSR 336


>gi|262394693|ref|YP_003286547.1| holliday junction DNA helicase RuvB [Vibrio sp. Ex25]
 gi|262338287|gb|ACY52082.1| holliday junction DNA helicase RuvB [Vibrio sp. Ex25]
          Length = 355

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 189/316 (59%), Positives = 241/316 (76%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           ED     +RP+ L ++ GQ      +++FI+AA+ R+EALDH+L  GPPGLGKTTLA +V
Sbjct: 39  EDVIDRAIRPKKLADYQGQDHVRDQMEIFIKAAQLRSEALDHLLIFGPPGLGKTTLANIV 98

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A E+ VN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS +VEE+LYPAMED+QL
Sbjct: 99  ANEMEVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQL 158

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  RL FY+I+DL+ IVQR
Sbjct: 159 DIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGITQRLEFYKIKDLQDIVQR 218

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A   GL++  E A E+A R+RGTPRIA RLLRRVRD+AEV     I  E+AD AL  L 
Sbjct: 219 SADCLGLSMEPEGALEVARRARGTPRIANRLLRRVRDYAEVKGNGHICAEVADKALNMLD 278

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D  GFD +D + L  I   FGGGPVG++ ++A + E +D IED++EPY+IQQG++QRTP
Sbjct: 279 VDAEGFDYMDRKLLLAIMEKFGGGPVGLDNMAAAIGEEKDTIEDVLEPYLIQQGYLQRTP 338

Query: 315 RGRLLMPIAWQHLGID 330
           RGR+    A+ H GI+
Sbjct: 339 RGRIATDRAYLHFGIE 354


>gi|294626861|ref|ZP_06705453.1| Holliday junction DNA helicase RuvB [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294665406|ref|ZP_06730694.1| Holliday junction DNA helicase RuvB [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292598875|gb|EFF43020.1| Holliday junction DNA helicase RuvB [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292604817|gb|EFF48180.1| Holliday junction DNA helicase RuvB [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 346

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 193/332 (58%), Positives = 248/332 (74%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M ++  + S +  ++DA  + +RP+ L ++ GQ      ++++I+AAKAR EA+DHVL  
Sbjct: 1   MTEQRIIASSSTREDDAADASIRPKRLADYLGQQPVREQMEIYIQAAKARGEAMDHVLIF 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTL+ V+A ELGV+ R TSGPVI KAGDLAALLTNL+  DVLFIDEIHRLS +
Sbjct: 61  GPPGLGKTTLSHVIANELGVSLRVTSGPVIEKAGDLAALLTNLQPHDVLFIDEIHRLSPV 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDFQ+D+M+G+GP+ARS+KI+L  FTLI ATTR GLLT PL+DRFGI  RL
Sbjct: 121 VEEVLYPAMEDFQIDIMIGDGPAARSIKIDLPPFTLIGATTRAGLLTAPLRDRFGIVQRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  ++L  IV R A + G+  T E A EIA R+RGTPRIA RLLRRVRD+A+V  A  
Sbjct: 181 EFYSPQELTRIVIRSAAILGIDCTPEGAAEIARRARGTPRIANRLLRRVRDYAQVKAAGH 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I   +A AA+  L +D  GFD+LD R L  I  +F GGPVG+E+++A LSE R  +ED+I
Sbjct: 241 IDLPVAQAAMQMLKVDPEGFDELDRRMLRTIVEHFDGGPVGVESLAASLSEERGTLEDVI 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EPY+IQQGF+ RT RGR++ P A+ HLG+  P
Sbjct: 301 EPYLIQQGFLIRTARGRMVTPKAYLHLGLKPP 332


>gi|330975327|gb|EGH75393.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 353

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 188/313 (60%), Positives = 240/313 (76%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP +L ++ GQ      +++FI+AA+ R+EALDH L  GPPGLGKTTLA ++A+E+GV+
Sbjct: 24  IRPLSLADYIGQPTVREQMELFIQAARGRSEALDHTLIFGPPGLGKTTLANIIAQEMGVS 83

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            +STSGPV+ + GDLAA+LTNLE  DVLFIDEIHRLS IVEE+LYPAMEDFQLD+M+GEG
Sbjct: 84  IKSTSGPVLERPGDLAAILTNLEPNDVLFIDEIHRLSPIVEEVLYPAMEDFQLDIMIGEG 143

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY I DL TIV R A + GL
Sbjct: 144 PAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQRLEFYNIADLSTIVSRSAGILGL 203

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  + A EIA R+RGTPRIA RLLRRVRDFAEV     ITR+ AD AL  L +D+ GFD
Sbjct: 204 VIEPQGAFEIARRARGTPRIANRLLRRVRDFAEVRGNGQITRQTADKALNLLDVDEHGFD 263

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             D R L  +   F GGPVG+++++A +SE R  IED++EPY+IQQG+I RTPRGR++  
Sbjct: 264 HQDRRLLLTMIEKFDGGPVGVDSLAAAISEERHTIEDVLEPYLIQQGYIMRTPRGRVVTR 323

Query: 322 IAWQHLGIDIPHR 334
            A+ H G++IP R
Sbjct: 324 HAYLHFGLNIPSR 336


>gi|53720507|ref|YP_109493.1| Holliday junction DNA helicase RuvB [Burkholderia pseudomallei
           K96243]
 gi|53726200|ref|YP_103911.1| Holliday junction DNA helicase RuvB [Burkholderia mallei ATCC
           23344]
 gi|67642315|ref|ZP_00441073.1| Holliday junction DNA helicase RuvB [Burkholderia mallei GB8 horse
           4]
 gi|76808940|ref|YP_334778.1| Holliday junction DNA helicase RuvB [Burkholderia pseudomallei
           1710b]
 gi|121600897|ref|YP_991617.1| Holliday junction DNA helicase RuvB [Burkholderia mallei SAVP1]
 gi|124385061|ref|YP_001027113.1| Holliday junction DNA helicase RuvB [Burkholderia mallei NCTC
           10229]
 gi|126441519|ref|YP_001060377.1| Holliday junction DNA helicase RuvB [Burkholderia pseudomallei 668]
 gi|126448021|ref|YP_001082058.1| Holliday junction DNA helicase RuvB [Burkholderia mallei NCTC
           10247]
 gi|126454669|ref|YP_001067638.1| Holliday junction DNA helicase B [Burkholderia pseudomallei 1106a]
 gi|134280568|ref|ZP_01767279.1| Holliday junction DNA helicase RuvB [Burkholderia pseudomallei 305]
 gi|167000503|ref|ZP_02266315.1| Holliday junction DNA helicase RuvB [Burkholderia mallei PRL-20]
 gi|167740151|ref|ZP_02412925.1| Holliday junction DNA helicase B [Burkholderia pseudomallei 14]
 gi|167817364|ref|ZP_02449044.1| Holliday junction DNA helicase B [Burkholderia pseudomallei 91]
 gi|167825772|ref|ZP_02457243.1| Holliday junction DNA helicase B [Burkholderia pseudomallei 9]
 gi|167847254|ref|ZP_02472762.1| Holliday junction DNA helicase B [Burkholderia pseudomallei B7210]
 gi|167895841|ref|ZP_02483243.1| Holliday junction DNA helicase B [Burkholderia pseudomallei 7894]
 gi|167904232|ref|ZP_02491437.1| Holliday junction DNA helicase B [Burkholderia pseudomallei NCTC
           13177]
 gi|167920443|ref|ZP_02507534.1| Holliday junction DNA helicase B [Burkholderia pseudomallei BCC215]
 gi|217421021|ref|ZP_03452526.1| Holliday junction DNA helicase RuvB [Burkholderia pseudomallei 576]
 gi|226198383|ref|ZP_03793952.1| Holliday junction DNA helicase RuvB [Burkholderia pseudomallei
           Pakistan 9]
 gi|237813765|ref|YP_002898216.1| holliday junction DNA helicase RuvB [Burkholderia pseudomallei
           MSHR346]
 gi|242315146|ref|ZP_04814162.1| Holliday junction DNA helicase RuvB [Burkholderia pseudomallei
           1106b]
 gi|254178911|ref|ZP_04885565.1| Holliday junction DNA helicase RuvB [Burkholderia mallei ATCC
           10399]
 gi|254180687|ref|ZP_04887285.1| Holliday junction DNA helicase RuvB [Burkholderia pseudomallei
           1655]
 gi|254191516|ref|ZP_04898019.1| Holliday junction DNA helicase RuvB [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254194850|ref|ZP_04901280.1| Holliday junction DNA helicase RuvB [Burkholderia pseudomallei S13]
 gi|254202623|ref|ZP_04908986.1| Holliday junction DNA helicase RuvB [Burkholderia mallei FMH]
 gi|254207962|ref|ZP_04914312.1| Holliday junction DNA helicase RuvB [Burkholderia mallei JHU]
 gi|254260762|ref|ZP_04951816.1| Holliday junction DNA helicase RuvB [Burkholderia pseudomallei
           1710a]
 gi|254299227|ref|ZP_04966677.1| Holliday junction DNA helicase RuvB [Burkholderia pseudomallei
           406e]
 gi|254355898|ref|ZP_04972176.1| Holliday junction DNA helicase RuvB [Burkholderia mallei
           2002721280]
 gi|68715374|sp|Q62HA9|RUVB_BURMA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|68715383|sp|Q63QX5|RUVB_BURPS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|97189943|sp|Q3JNS5|RUVB_BURP1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|166231468|sp|A3MP72|RUVB_BURM7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|166231469|sp|A2S594|RUVB_BURM9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|166231470|sp|A1V064|RUVB_BURMS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|166231471|sp|A3NZ67|RUVB_BURP0 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|166231472|sp|A3NDF6|RUVB_BURP6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|52210921|emb|CAH36909.1| holliday junction DNA helicase [Burkholderia pseudomallei K96243]
 gi|52429623|gb|AAU50216.1| Holliday junction DNA helicase RuvB [Burkholderia mallei ATCC
           23344]
 gi|76578393|gb|ABA47868.1| Holliday junction DNA helicase RuvB [Burkholderia pseudomallei
           1710b]
 gi|121229707|gb|ABM52225.1| Holliday junction DNA helicase RuvB [Burkholderia mallei SAVP1]
 gi|124293081|gb|ABN02350.1| Holliday junction DNA helicase RuvB [Burkholderia mallei NCTC
           10229]
 gi|126221012|gb|ABN84518.1| Holliday junction DNA helicase RuvB [Burkholderia pseudomallei 668]
 gi|126228311|gb|ABN91851.1| Holliday junction DNA helicase RuvB [Burkholderia pseudomallei
           1106a]
 gi|126240891|gb|ABO03984.1| Holliday junction DNA helicase RuvB [Burkholderia mallei NCTC
           10247]
 gi|134248575|gb|EBA48658.1| Holliday junction DNA helicase RuvB [Burkholderia pseudomallei 305]
 gi|147746870|gb|EDK53947.1| Holliday junction DNA helicase RuvB [Burkholderia mallei FMH]
 gi|147751856|gb|EDK58923.1| Holliday junction DNA helicase RuvB [Burkholderia mallei JHU]
 gi|148024873|gb|EDK83051.1| Holliday junction DNA helicase RuvB [Burkholderia mallei
           2002721280]
 gi|157808819|gb|EDO85989.1| Holliday junction DNA helicase RuvB [Burkholderia pseudomallei
           406e]
 gi|157939187|gb|EDO94857.1| Holliday junction DNA helicase RuvB [Burkholderia pseudomallei
           Pasteur 52237]
 gi|160694825|gb|EDP84833.1| Holliday junction DNA helicase RuvB [Burkholderia mallei ATCC
           10399]
 gi|169651599|gb|EDS84292.1| Holliday junction DNA helicase RuvB [Burkholderia pseudomallei S13]
 gi|184211226|gb|EDU08269.1| Holliday junction DNA helicase RuvB [Burkholderia pseudomallei
           1655]
 gi|217396433|gb|EEC36450.1| Holliday junction DNA helicase RuvB [Burkholderia pseudomallei 576]
 gi|225929566|gb|EEH25584.1| Holliday junction DNA helicase RuvB [Burkholderia pseudomallei
           Pakistan 9]
 gi|237504665|gb|ACQ96983.1| holliday junction DNA helicase RuvB [Burkholderia pseudomallei
           MSHR346]
 gi|238523443|gb|EEP86881.1| Holliday junction DNA helicase RuvB [Burkholderia mallei GB8 horse
           4]
 gi|242138385|gb|EES24787.1| Holliday junction DNA helicase RuvB [Burkholderia pseudomallei
           1106b]
 gi|243063558|gb|EES45744.1| Holliday junction DNA helicase RuvB [Burkholderia mallei PRL-20]
 gi|254219451|gb|EET08835.1| Holliday junction DNA helicase RuvB [Burkholderia pseudomallei
           1710a]
          Length = 356

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 195/320 (60%), Positives = 242/320 (75%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           S E+A    LRPR L+E+ GQ +    L++FIEAAK R+EALDHVL  GPPGLGKTTLA 
Sbjct: 20  SHEEAFERALRPRQLDEYVGQEKVRDQLEIFIEAAKRRSEALDHVLLFGPPGLGKTTLAH 79

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++ARE+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+
Sbjct: 80  IIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDY 139

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           Q+D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY+ E L  IV
Sbjct: 140 QIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYDAEQLSRIV 199

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           +R A L    +    A EIA RSRGTPRIA RLLRRVRD+AEV     IT  +ADAAL  
Sbjct: 200 RRSAALLNAQIDPAGALEIAKRSRGTPRIANRLLRRVRDYAEVKADGNITAAVADAALAM 259

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D +GFD +D + L  I   F GGPVG++ ++A + E RD IED++EPY+IQQGF+QR
Sbjct: 260 LDVDPVGFDLMDRKLLEAILHKFDGGPVGVDNLAAAIGEERDTIEDVLEPYLIQQGFLQR 319

Query: 313 TPRGRLLMPIAWQHLGIDIP 332
           TPRGR+   + ++H G+  P
Sbjct: 320 TPRGRVATLLTYRHFGLSAP 339


>gi|71275801|ref|ZP_00652085.1| Holliday junction DNA helicase RuvB [Xylella fastidiosa Dixon]
 gi|71900400|ref|ZP_00682533.1| Holliday junction DNA helicase RuvB [Xylella fastidiosa Ann-1]
 gi|170730219|ref|YP_001775652.1| Holliday junction DNA helicase RuvB [Xylella fastidiosa M12]
 gi|238687918|sp|B0U2E3|RUVB_XYLFM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|71163379|gb|EAO13097.1| Holliday junction DNA helicase RuvB [Xylella fastidiosa Dixon]
 gi|71729832|gb|EAO31930.1| Holliday junction DNA helicase RuvB [Xylella fastidiosa Ann-1]
 gi|167965012|gb|ACA12022.1| holliday junction binding protein, DNA helicase [Xylella fastidiosa
           M12]
          Length = 343

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 198/329 (60%), Positives = 244/329 (74%), Gaps = 3/329 (0%)

Query: 2   MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MDR  ++    ++ED  I + +RP+ L ++ GQ      + ++I+A KARAEALDHVL  
Sbjct: 1   MDR--IIDTAATREDEAIEVSIRPKRLADYLGQQPVREQMDIYIQATKARAEALDHVLIF 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTL+ V+A ELGV  R TSGPVI KAGDLAALLTNL+  DVLFIDEIHRLS +
Sbjct: 59  GPPGLGKTTLSHVIAYELGVKLRVTSGPVIEKAGDLAALLTNLQPYDVLFIDEIHRLSPV 118

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDFQ+D+M+GEGP+ARS+KI+L  FTLI ATTR GLLT PL+DRFGI  RL
Sbjct: 119 VEEVLYPAMEDFQIDIMIGEGPAARSIKIDLPPFTLIGATTRTGLLTAPLRDRFGIVQRL 178

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  EDL  IV+R A +  +  T E A EIA R+RGTPRIA RLLRRVRD+AEV     
Sbjct: 179 EFYSPEDLARIVRRSAGILNIDCTTEGAAEIAQRARGTPRIANRLLRRVRDYAEVKAGGQ 238

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           IT E+A AA+  L +D+ GFD+LD R L  I   F GGPVGIE+++A LSE R  +ED++
Sbjct: 239 ITIEVAQAAMQMLKVDQGGFDELDRRLLHTIVEYFDGGPVGIESLAASLSEERGTLEDVV 298

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           EPY+IQQGF+ RT RGR+    A+QHL +
Sbjct: 299 EPYLIQQGFLVRTARGRMATDKAYQHLAL 327


>gi|255065913|ref|ZP_05317768.1| holliday junction DNA helicase RuvB [Neisseria sicca ATCC 29256]
 gi|255049824|gb|EET45288.1| holliday junction DNA helicase RuvB [Neisseria sicca ATCC 29256]
          Length = 343

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 195/319 (61%), Positives = 242/319 (75%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           SQE+     LRP+TL+++ GQ +A   L +FI+AAK R EALDH L  GPPGLGKTTLA 
Sbjct: 23  SQEELLERALRPKTLDDYIGQDKAKEQLAIFIQAAKKRGEALDHTLLFGPPGLGKTTLAH 82

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++A+ELGVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+
Sbjct: 83  IIAKELGVNLRQTSGPVLERAGDLAALLTNLEPHDVLFIDEIHRLSPVVEEILYPALEDY 142

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           QLD+M+GEGP+ARSVKI+L  FTL+ ATTR G+LTNPL+DRFGI  RL FY+ +DL TIV
Sbjct: 143 QLDIMIGEGPAARSVKIDLPPFTLVGATTRAGMLTNPLRDRFGIVARLEFYQNQDLATIV 202

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R A+L  L + +E A E+A RSRGTPRIA RLLRRVRDFA+V +   I   IADAAL  
Sbjct: 203 SRSAQLLQLDMGEEGAMEVAKRSRGTPRIANRLLRRVRDFADVKNNGVIDAAIADAALSM 262

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D  G D +D ++L  I   F GGPVG++ ++A + E  D IED+IEPY+IQQGF+QR
Sbjct: 263 LDVDAQGLDVMDRKFLEAILHKFSGGPVGLDNVAAAIGESTDTIEDVIEPYLIQQGFLQR 322

Query: 313 TPRGRLLMPIAWQHLGIDI 331
           TPRGR+     + H G+ +
Sbjct: 323 TPRGRMATERTYLHFGLKM 341


>gi|21243873|ref|NP_643455.1| Holliday junction DNA helicase RuvB [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|24212376|sp|Q8PHV2|RUVB_XANAC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|21109474|gb|AAM37991.1| holliday junction binding protein DNA helicase [Xanthomonas
           axonopodis pv. citri str. 306]
          Length = 346

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 193/332 (58%), Positives = 248/332 (74%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M ++  + S +  ++DA  + +RP+ L ++ GQ      ++++I+AAKAR EA+DHVL  
Sbjct: 1   MTEQRIIASSSTREDDAADASIRPKRLADYLGQQPVREQMEIYIQAAKARGEAMDHVLIF 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTL+ V+A ELGV+ R TSGPVI KAGDLAALLTNL+  DVLFIDEIHRLS +
Sbjct: 61  GPPGLGKTTLSHVIANELGVSLRVTSGPVIEKAGDLAALLTNLQPHDVLFIDEIHRLSPV 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDFQ+D+M+G+GP+ARS+KI+L  FTLI ATTR GLLT PL+DRFGI  RL
Sbjct: 121 VEEVLYPAMEDFQIDIMIGDGPAARSIKIDLPPFTLIGATTRAGLLTAPLRDRFGIVQRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  ++L  IV R A + G+  T E A EIA R+RGTPRIA RLLRRVRD+A+V  A  
Sbjct: 181 EFYSPQELTRIVIRSAAILGIDCTAEGAAEIARRARGTPRIANRLLRRVRDYAQVKAAGH 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I   +A AA+  L +D  GFD+LD R L  I  +F GGPVG+E+++A LSE R  +ED+I
Sbjct: 241 IDLPVAQAAMQMLKVDPEGFDELDRRMLRTIVEHFDGGPVGVESLAASLSEERGTLEDVI 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EPY+IQQGF+ RT RGR++ P A+ HLG+  P
Sbjct: 301 EPYLIQQGFLIRTARGRMVTPKAYLHLGLKPP 332


>gi|167721175|ref|ZP_02404411.1| Holliday junction DNA helicase B [Burkholderia pseudomallei DM98]
          Length = 356

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 195/320 (60%), Positives = 242/320 (75%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           S E+A    LRPR L+E+ GQ +    L++FIEAAK R+EALDHVL  GPPGLGKTTLA 
Sbjct: 20  SHEEAFERALRPRQLDEYVGQEKVRGQLEIFIEAAKRRSEALDHVLLFGPPGLGKTTLAH 79

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++ARE+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+
Sbjct: 80  IIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDY 139

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           Q+D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY+ E L  IV
Sbjct: 140 QIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYDAEQLSRIV 199

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           +R A L    +    A EIA RSRGTPRIA RLLRRVRD+AEV     IT  +ADAAL  
Sbjct: 200 RRSAALLNAQIDPAGALEIAKRSRGTPRIANRLLRRVRDYAEVKADGNITAAVADAALAM 259

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D +GFD +D + L  I   F GGPVG++ ++A + E RD IED++EPY+IQQGF+QR
Sbjct: 260 LDVDPVGFDLMDRKLLEAILHKFDGGPVGVDNLAAAIGEERDTIEDVLEPYLIQQGFLQR 319

Query: 313 TPRGRLLMPIAWQHLGIDIP 332
           TPRGR+   + ++H G+  P
Sbjct: 320 TPRGRVATLLTYRHFGLSAP 339


>gi|66044658|ref|YP_234499.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv.
           syringae B728a]
 gi|81308433|sp|Q4ZWL1|RUVB_PSEU2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|63255365|gb|AAY36461.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv.
           syringae B728a]
 gi|330968890|gb|EGH68956.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 353

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 188/313 (60%), Positives = 240/313 (76%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP +L ++ GQ      +++FI+AA+ R+EALDH L  GPPGLGKTTLA ++A+E+GV+
Sbjct: 24  IRPLSLADYIGQPTVREQMELFIQAARGRSEALDHTLIFGPPGLGKTTLANIIAQEMGVS 83

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            +STSGPV+ + GDLAA+LTNLE  DVLFIDEIHRLS IVEE+LYPAMEDFQLD+M+GEG
Sbjct: 84  IKSTSGPVLERPGDLAAILTNLEPNDVLFIDEIHRLSPIVEEVLYPAMEDFQLDIMIGEG 143

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY I DL TIV R A + GL
Sbjct: 144 PAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQRLEFYNIADLSTIVSRSAGILGL 203

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  + A EIA R+RGTPRIA RLLRRVRDFAEV     ITR+ AD AL  L +D+ GFD
Sbjct: 204 VIEPQGAFEIARRARGTPRIANRLLRRVRDFAEVRGNGQITRQTADKALNLLDVDEHGFD 263

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             D R L  +   F GGPVG+++++A +SE R  IED++EPY+IQQG+I RTPRGR++  
Sbjct: 264 HQDRRLLLTMIEKFDGGPVGVDSLAAAISEERHTIEDVLEPYLIQQGYIMRTPRGRVVTR 323

Query: 322 IAWQHLGIDIPHR 334
            A+ H G++IP R
Sbjct: 324 HAYLHFGLNIPSR 336


>gi|149910564|ref|ZP_01899203.1| Holliday junction DNA helicase RuvB [Moritella sp. PE36]
 gi|149806407|gb|EDM66380.1| Holliday junction DNA helicase RuvB [Moritella sp. PE36]
          Length = 335

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 193/335 (57%), Positives = 248/335 (74%), Gaps = 1/335 (0%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S    +E+  I   +RP+ L ++ GQ    S +++FIEA+K R +ALDH+L 
Sbjct: 1   MIEADRLISSGTVREEEVIDRAIRPKMLSDYQGQDHVRSQMEIFIEASKRRDDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GV+ ++TSGPV+ KAGDLAALLTNLE  DVLFIDEIHRL+ 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVSIKTTSGPVLEKAGDLAALLTNLEPNDVLFIDEIHRLNP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            +EEILYPAMED+QLD+M+GEGPSARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 SIEEILYPAMEDYQLDIMIGEGPSARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++EDL+ IV R A   GL +    A EIA R+RGTPRIA RLLRRVRD+AEV H  
Sbjct: 181 LEFYKVEDLQDIVLRSATCLGLNMDRAGALEIARRARGTPRIANRLLRRVRDYAEVKHDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  EI+ AAL  L +D  GFD +D + L  I   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 DIDAEISSAALSMLDVDTCGFDYMDRKLLIAIIDTFSGGPVGLDNVAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           +EPY+IQQGF+QRTPRGR+    A+ HLG D P +
Sbjct: 301 LEPYLIQQGFLQRTPRGRIATARAYLHLGFDYPEK 335


>gi|183599001|ref|ZP_02960494.1| hypothetical protein PROSTU_02445 [Providencia stuartii ATCC 25827]
 gi|188021216|gb|EDU59256.1| hypothetical protein PROSTU_02445 [Providencia stuartii ATCC 25827]
          Length = 336

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 191/331 (57%), Positives = 249/331 (75%), Gaps = 2/331 (0%)

Query: 1   MMDREGLLSRNV--SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M++ + L+S  V   +E+A    +RP+ L E+ GQ +    +++FI+AAK R +ALDH+L
Sbjct: 1   MIEADRLISAEVIHDEEEAIDRAIRPKLLNEYIGQPQVKEQMEIFIQAAKLRGDALDHLL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS
Sbjct: 61  IFGPPGLGKTTLAGIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLS 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            +VEEILYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  
Sbjct: 121 PVVEEILYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQ 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           RL FY ++DL+ IV+R A+  G+ +++E A ++AMRSRGTPRI  RLLRRVRDFA+V   
Sbjct: 181 RLEFYNVDDLQYIVKRSAQFMGVEISEEGARQVAMRSRGTPRITNRLLRRVRDFAQVKGD 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
            +I   IA  AL  L +D  GFD LD + L  I   F GGPVG++ ++A + E R+ IED
Sbjct: 241 GSINELIASQALDMLNVDAAGFDYLDRKLLVAIIDKFMGGPVGVDNLAAAIGEERETIED 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           ++EP++IQQGFIQRTPRGR+    A+ H G+
Sbjct: 301 VLEPFLIQQGFIQRTPRGRMATAHAYLHFGL 331


>gi|148284808|ref|YP_001248898.1| Holliday junction DNA helicase B [Orientia tsutsugamushi str.
           Boryong]
 gi|172047216|sp|A5CEJ6|RUVB_ORITB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|146740247|emb|CAM80578.1| Holliday junction DNA helicase [Orientia tsutsugamushi str.
           Boryong]
          Length = 325

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 189/324 (58%), Positives = 245/324 (75%), Gaps = 1/324 (0%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           +  LL   V+ E+ + ++LRP  L +F GQ +  SNL +FI ++  R E+LDH L  GPP
Sbjct: 2   KNQLLDAKVASEEQE-TVLRPSLLNDFIGQNQMKSNLTIFITSSIERDESLDHTLLHGPP 60

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKT++AQ++A+E  VN +ST+GP+++KA DLAA+LTNL+  DVLFIDEIHRL+I VEE
Sbjct: 61  GLGKTSIAQIIAKEKNVNLKSTAGPILSKAADLAAILTNLQKNDVLFIDEIHRLNIHVEE 120

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILY AMEDF LD+M+GEGPSARSVKI L +FTLI ATTR+GL++ PL DRFGI ++LNFY
Sbjct: 121 ILYSAMEDFSLDIMIGEGPSARSVKIYLPKFTLIGATTRLGLISKPLCDRFGIHLKLNFY 180

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
             E+L  IV+RGAK+  +A+   AA EIA RSRGTPRIA RLL+RVRDF    +   + +
Sbjct: 181 SCEELTQIVERGAKVLNVALDTNAAIEIANRSRGTPRIALRLLKRVRDFGIYQNINPLNQ 240

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           +I D AL +L IDK+G D  D +YL  IA N+ GGPVGI+TI+A LSE RD IE++IEPY
Sbjct: 241 QITDYALNQLGIDKLGLDSSDHKYLRFIAENYDGGPVGIDTIAAALSEQRDTIEEMIEPY 300

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHL 327
           +IQ GF+QRT RGR++   A +HL
Sbjct: 301 LIQIGFVQRTQRGRVITANALKHL 324


>gi|146306304|ref|YP_001186769.1| Holliday junction DNA helicase B [Pseudomonas mendocina ymp]
 gi|166231540|sp|A4XRS1|RUVB_PSEMY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|145574505|gb|ABP84037.1| Holliday junction DNA helicase RuvB [Pseudomonas mendocina ymp]
          Length = 350

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 189/313 (60%), Positives = 241/313 (76%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  L ++ GQ      +++FI+AA+ RAE+LDH L  GPPGLGKTTLA ++A+E+GV+
Sbjct: 23  IRPLKLADYIGQPGVREQMELFIQAARGRAESLDHTLIFGPPGLGKTTLANIIAQEMGVS 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            +STSGPV+ + GDLAALLTNLE  DVLF+DEIHRLS IVEE+LYPAMEDFQLD+M+GEG
Sbjct: 83  IKSTSGPVLERPGDLAALLTNLEAGDVLFVDEIHRLSPIVEEVLYPAMEDFQLDIMIGEG 142

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY I+DL TIV R A + GL
Sbjct: 143 PAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQRLEFYGIDDLATIVTRSAGILGL 202

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + D+ A EIA R+RGTPRIA RLLRRVRDFAEV     ITREIAD AL  L +D+ GFD
Sbjct: 203 PIEDQGAYEIARRARGTPRIANRLLRRVRDFAEVRGRGHITREIADQALNLLDVDERGFD 262

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             D R L  +   F GGPVG+++++A +SE R  IED++EPY+IQQG++ RTPRGR++  
Sbjct: 263 HSDRRLLLAMIEKFDGGPVGVDSLAAAISEERHTIEDVLEPYLIQQGYMMRTPRGRVVTR 322

Query: 322 IAWQHLGIDIPHR 334
            A+ H G++ P R
Sbjct: 323 HAYLHFGLNTPKR 335


>gi|317491788|ref|ZP_07950223.1| Holliday junction DNA helicase RuvB [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316920222|gb|EFV41546.1| Holliday junction DNA helicase RuvB [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 335

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 189/330 (57%), Positives = 250/330 (75%), Gaps = 1/330 (0%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L++  V  E+  I   +RP++L E+ GQ +    +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRLITAEVQSEEEIIDRAIRPKSLSEYVGQPQVRGQMEIFIKAAKLRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPAMED+QLD+M+GEGP+ARS+KI+L  FTL+ ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLVGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IV R A+  GL++T+E A E+A RSRGTPRIA RLLRRVRD+AEV    
Sbjct: 181 LEFYQVADLQHIVGRSAQCLGLSLTEEGAHEVARRSRGTPRIANRLLRRVRDYAEVCADG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  ++A  AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 NIDADVATQALNMLDVDAEGFDYMDRKLLLAVIDKFMGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           +EPY+IQQGF+QRTPRGR+    A++H G+
Sbjct: 301 LEPYLIQQGFLQRTPRGRMATNHAYKHFGM 330


>gi|71278079|ref|YP_268843.1| Holliday junction DNA helicase RuvB [Colwellia psychrerythraea 34H]
 gi|97190000|sp|Q483C4|RUVB_COLP3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|71143819|gb|AAZ24292.1| Holliday junction DNA helicase RuvB [Colwellia psychrerythraea 34H]
          Length = 337

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 189/330 (57%), Positives = 245/330 (74%), Gaps = 1/330 (0%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+    S ED  +   +RP+ L+++TGQ    + +++FI AAK R E LDH+L 
Sbjct: 1   MIEADRLIEPIASVEDERVDRAIRPKMLQDYTGQQHVKAQMEIFIPAAKNRGEPLDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAALLTNLE+ D+LFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAALLTNLEENDILFIDEIHRLSA 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGALTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY + DL TIV R A    L + +E A E+A RSRGTPRIA RLLRRVRD+A++    
Sbjct: 181 LEFYNVADLSTIVSRSAHFLNLTIDEEGAFEVARRSRGTPRIANRLLRRVRDYADIKSHG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            + ++ A AAL  L +D  GFD +D + L  I   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 VVNQQTAAAALDMLEVDSEGFDIMDRKLLHAIIDKFMGGPVGLDNVAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           IEP++IQQGF+QRTPRGR+    A+QH GI
Sbjct: 301 IEPFLIQQGFLQRTPRGRIATDRAYQHFGI 330


>gi|331007237|ref|ZP_08330444.1| Holliday junction DNA helicase RuvB [gamma proteobacterium
           IMCC1989]
 gi|330418953|gb|EGG93412.1| Holliday junction DNA helicase RuvB [gamma proteobacterium
           IMCC1989]
          Length = 344

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 184/308 (59%), Positives = 239/308 (77%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+TL ++ GQ +    +++FI+AAK R E LDH L  GPPGLGKTTLA ++A E+GV 
Sbjct: 28  IRPKTLVDYVGQPQVREQMEIFIQAAKKREEPLDHTLVFGPPGLGKTTLANIIANEMGVQ 87

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
             +TSGPVI KAGDLAAL+TNL+  DVLFIDEIHRLS  +EE+LYPAMED+QLD+M+GEG
Sbjct: 88  VTATSGPVIEKAGDLAALMTNLQAGDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEG 147

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+K++L  FTL+ ATTR GLLT+PL+DRFGI  RL FY I DL  IV R A+L G+
Sbjct: 148 PAARSIKLDLPPFTLVGATTRAGLLTSPLRDRFGIVQRLEFYSIPDLTYIVGRSARLLGV 207

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + +  A EIA RSRGTPRI+ RLLRRVRD+AEV    +IT++IADAAL  L++D+ GFD
Sbjct: 208 EMDEAGAGEIAKRSRGTPRISNRLLRRVRDYAEVKSDGSITQDIADAALNMLSVDQHGFD 267

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D R L  +   F GGPVG+E+++A +SE RD IED++EPY+IQQG++ RTPRGR++  
Sbjct: 268 TMDRRLLLAMIEKFDGGPVGVESLAAAISEERDTIEDVLEPYLIQQGYMARTPRGRIVTQ 327

Query: 322 IAWQHLGI 329
           +A+ H  I
Sbjct: 328 LAYDHFSI 335


>gi|320155873|ref|YP_004188252.1| Holliday junction DNA helicase RuvB [Vibrio vulnificus MO6-24/O]
 gi|326423954|ref|NP_761018.2| Holliday junction DNA helicase RuvB [Vibrio vulnificus CMCP6]
 gi|319931185|gb|ADV86049.1| holliday junction DNA helicase RuvB [Vibrio vulnificus MO6-24/O]
 gi|319999332|gb|AAO10545.2| Holliday junction DNA helicase RuvB [Vibrio vulnificus CMCP6]
          Length = 334

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 189/316 (59%), Positives = 239/316 (75%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           ED     +RP+ L ++ GQ      +++FI+AA+ R EALDH+L  GPPGLGKTTLA +V
Sbjct: 18  EDVIDRAIRPKKLADYQGQDHVRDQMEIFIKAAQLRNEALDHLLIFGPPGLGKTTLANIV 77

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A E+GVN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS +VEE+LYPAMED+QL
Sbjct: 78  ANEMGVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQL 137

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  RL +Y+I DL+ IVQR
Sbjct: 138 DIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGITQRLEYYKIPDLQNIVQR 197

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A   GL++  E A E+A R+RGTPRIA RLLRRVRDFAEV     I  + AD AL  L 
Sbjct: 198 SADCLGLSMEAEGALEVARRARGTPRIANRLLRRVRDFAEVKGNGHICADTADKALNMLD 257

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D  GFD +D + L  I   FGGGPVG++ ++A + E +D IED++EPY+IQQG++QRTP
Sbjct: 258 VDSKGFDYMDRKLLLAIMEKFGGGPVGLDNMAAAIGEEKDTIEDVLEPYLIQQGYLQRTP 317

Query: 315 RGRLLMPIAWQHLGID 330
           RGR+    A+ H GI+
Sbjct: 318 RGRIATDRAYLHFGIE 333


>gi|77919932|ref|YP_357747.1| Holliday junction DNA helicase RuvB [Pelobacter carbinolicus DSM
           2380]
 gi|97190190|sp|Q3A230|RUVB_PELCD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|77546015|gb|ABA89577.1| Holliday junction DNA helicase RuvB [Pelobacter carbinolicus DSM
           2380]
          Length = 341

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 190/320 (59%), Positives = 241/320 (75%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           S+ED   + LRPR L E+ GQ +A  NL+VFI+AA+ R E+LDHVLF GPPGLGKTTLA 
Sbjct: 12  SEEDRLEASLRPRVLTEYIGQSKAKGNLQVFIDAARGRQESLDHVLFYGPPGLGKTTLAN 71

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           +VA E+GV+ +STSGPVI K GDLAA+LTNL D DVLFIDEIHRLS +VEEILYPAMED+
Sbjct: 72  IVASEMGVSIKSTSGPVIEKPGDLAAILTNLSDGDVLFIDEIHRLSPVVEEILYPAMEDY 131

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           QLD+++G+GPSAR++K+++ RFTL+ ATTR GLL++PL+DRFG+  RL FY  ++L TI 
Sbjct: 132 QLDIIIGQGPSARTIKLDIPRFTLVGATTRAGLLSSPLRDRFGVICRLEFYTDDELATIA 191

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R A++  + +  +   EIA RSRGTPRIA RLLRRVRDFA+V     ITR+IAD AL R
Sbjct: 192 GRSARILDIPIEKDGQYEIARRSRGTPRIANRLLRRVRDFAQVKGDGIITRDIADMALSR 251

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D  G D +D   L  I   F GGPVG+ET++A + E +D IED+IEPY++Q GF+ R
Sbjct: 252 LEVDNCGLDHMDRLLLLAIIDKFAGGPVGLETLAAAVGEEKDTIEDVIEPYLLQNGFLNR 311

Query: 313 TPRGRLLMPIAWQHLGIDIP 332
           TPRGR     A++H    IP
Sbjct: 312 TPRGRTATERAYRHFQRQIP 331


>gi|37680468|ref|NP_935077.1| Holliday junction DNA helicase B [Vibrio vulnificus YJ016]
 gi|44888370|sp|Q7MJ78|RUVB_VIBVY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|37199216|dbj|BAC95048.1| holliday junction resolvasome, helicase subunit [Vibrio vulnificus
           YJ016]
          Length = 334

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 189/316 (59%), Positives = 239/316 (75%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           ED     +RP+ L ++ GQ      +++FI+AA+ R EALDH+L  GPPGLGKTTLA +V
Sbjct: 18  EDVIDRAIRPKKLADYQGQDHVRDQMEIFIKAAQLRNEALDHLLIFGPPGLGKTTLANIV 77

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A E+GVN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS +VEE+LYPAMED+QL
Sbjct: 78  ANEMGVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQL 137

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  RL +Y+I DL+ IVQR
Sbjct: 138 DIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGITQRLEYYKIPDLQNIVQR 197

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A   GL++  E A E+A R+RGTPRIA RLLRRVRDFAEV     I  + AD AL  L 
Sbjct: 198 SADCLGLSMEAEGALEVARRARGTPRIANRLLRRVRDFAEVKGNGHICADTADKALNMLD 257

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D  GFD +D + L  I   FGGGPVG++ ++A + E +D IED++EPY+IQQG++QRTP
Sbjct: 258 VDSKGFDYMDRKLLLAIMEKFGGGPVGLDNMAAAIGEEKDTIEDVLEPYLIQQGYLQRTP 317

Query: 315 RGRLLMPIAWQHLGID 330
           RGR+    A+ H GI+
Sbjct: 318 RGRIATDRAYLHFGIE 333


>gi|39996179|ref|NP_952130.1| Holliday junction DNA helicase RuvB [Geobacter sulfurreducens PCA]
 gi|47606085|sp|P61532|RUVB_GEOSL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|39982944|gb|AAR34403.1| Holliday junction DNA helicase RuvB [Geobacter sulfurreducens PCA]
 gi|298505193|gb|ADI83916.1| Holliday junction DNA helicase RuvB [Geobacter sulfurreducens
           KN400]
          Length = 338

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 191/326 (58%), Positives = 244/326 (74%), Gaps = 4/326 (1%)

Query: 7   LLSRNVSQEDADI----SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           + +R +S E  D     S LRPR LE++ GQ +A  NL+VFI+AA+ R EALDHVL  GP
Sbjct: 1   MTTRTISPEKTDDDYVESSLRPRALEDYIGQEKAKGNLRVFIDAARKRGEALDHVLLYGP 60

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++A E+GVN +STSGPVI + GDLAA+LTNLE  DVLFIDEIHRLS +VE
Sbjct: 61  PGLGKTTLANIIACEMGVNIKSTSGPVIERPGDLAAILTNLEPHDVLFIDEIHRLSHVVE 120

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILYPAMEDFQLD+++G+GPSAR++K++L RFTL+ ATTR GLL++PL+DRFG+  RL F
Sbjct: 121 EILYPAMEDFQLDIIIGQGPSARTIKLDLPRFTLVGATTRAGLLSSPLRDRFGVISRLEF 180

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y   +L TIV R A +  + +  + A E+A RSRGTPRIA RLLRRVRDFA+V     I+
Sbjct: 181 YTDAELSTIVTRSAHILDIQIEPDGARELARRSRGTPRIANRLLRRVRDFAQVRADGVIS 240

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            ++ D +L  L ID+ GFDQ+D   +  I   FGGGPVG++TI+A + E RD IED+ EP
Sbjct: 241 AQVVDESLKLLEIDEKGFDQMDRTIMLTIIDKFGGGPVGLDTIAAAIGEERDTIEDVYEP 300

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLG 328
           ++IQ GFI RTPRGR+    A++H G
Sbjct: 301 FLIQHGFINRTPRGRVATKSAYEHFG 326


>gi|315126272|ref|YP_004068275.1| Holliday junction DNA helicase B [Pseudoalteromonas sp. SM9913]
 gi|315014786|gb|ADT68124.1| Holliday junction DNA helicase B [Pseudoalteromonas sp. SM9913]
          Length = 335

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 187/317 (58%), Positives = 238/317 (75%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           + ED     +RP+ L ++ GQ      +++FIEAA++R+EALDH+L  GPPGLGKTTLA 
Sbjct: 14  TNEDTIDRAIRPKLLADYRGQPHVKQQMEIFIEAARSRSEALDHLLIFGPPGLGKTTLAN 73

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           +VA EL VN ++TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS  VEEILYPAMED+
Sbjct: 74  IVANELNVNIKTTSGPVLEKAGDLAALLTNLEEGDVLFIDEIHRLSPQVEEILYPAMEDY 133

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  RL FY +EDL  IV
Sbjct: 134 QLDIMIGEGPAARSIKLDLPAFTLIGATTRAGSLTSPLRDRFGIVQRLEFYSVEDLSHIV 193

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R A    L + D+ A EIA RSRGTPRIA RLLRRVRD+ +V    T+  E+A  AL  
Sbjct: 194 GRSAHYLSLEMCDDGAAEIAKRSRGTPRIANRLLRRVRDYTQVKSDGTVNAEVAQQALDM 253

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           + +DK GFD +D +YL  I   F GGPVG++ ++A + E ++ IED+IEP++IQQGFIQR
Sbjct: 254 IDVDKSGFDYMDRKYLLAIIEKFMGGPVGLDNLAAAIGEEKETIEDVIEPFLIQQGFIQR 313

Query: 313 TPRGRLLMPIAWQHLGI 329
           TPRGR++   A+ H G+
Sbjct: 314 TPRGRIVSDNAYHHFGL 330


>gi|240014101|ref|ZP_04721014.1| Holliday junction DNA helicase RuvB [Neisseria gonorrhoeae DGI18]
 gi|240016536|ref|ZP_04723076.1| Holliday junction DNA helicase RuvB [Neisseria gonorrhoeae FA6140]
 gi|240080660|ref|ZP_04725203.1| Holliday junction DNA helicase RuvB [Neisseria gonorrhoeae FA19]
 gi|240115729|ref|ZP_04729791.1| Holliday junction DNA helicase RuvB [Neisseria gonorrhoeae PID18]
 gi|240118025|ref|ZP_04732087.1| Holliday junction DNA helicase RuvB [Neisseria gonorrhoeae PID1]
 gi|240121663|ref|ZP_04734625.1| Holliday junction DNA helicase RuvB [Neisseria gonorrhoeae PID24-1]
 gi|240123579|ref|ZP_04736535.1| Holliday junction DNA helicase RuvB [Neisseria gonorrhoeae PID332]
 gi|254493780|ref|ZP_05106951.1| holliday junction DNA helicase B [Neisseria gonorrhoeae 1291]
 gi|268596783|ref|ZP_06130950.1| holliday junction DNA helicase B [Neisseria gonorrhoeae FA19]
 gi|268601408|ref|ZP_06135575.1| holliday junction DNA helicase B [Neisseria gonorrhoeae PID18]
 gi|268603739|ref|ZP_06137906.1| holliday junction DNA helicase B [Neisseria gonorrhoeae PID1]
 gi|268682208|ref|ZP_06149070.1| holliday junction DNA helicase B [Neisseria gonorrhoeae PID332]
 gi|226512820|gb|EEH62165.1| holliday junction DNA helicase B [Neisseria gonorrhoeae 1291]
 gi|268550571|gb|EEZ45590.1| holliday junction DNA helicase B [Neisseria gonorrhoeae FA19]
 gi|268585539|gb|EEZ50215.1| holliday junction DNA helicase B [Neisseria gonorrhoeae PID18]
 gi|268587870|gb|EEZ52546.1| holliday junction DNA helicase B [Neisseria gonorrhoeae PID1]
 gi|268622492|gb|EEZ54892.1| holliday junction DNA helicase B [Neisseria gonorrhoeae PID332]
          Length = 343

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 194/319 (60%), Positives = 244/319 (76%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           +QE+     LRP+TL+++ GQ +A   L +FI+AAK R EALDHVL  GPPGLGKTTLA 
Sbjct: 23  AQEELLERALRPKTLDDYIGQHKAKEQLAIFIQAAKKRGEALDHVLLFGPPGLGKTTLAH 82

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++A+ELGVN R TSGPV+ +AGDLAALLTNL+  DVLFIDEIHRLS +VEEILYPA+ED+
Sbjct: 83  IIAKELGVNLRQTSGPVLERAGDLAALLTNLDPHDVLFIDEIHRLSPVVEEILYPALEDY 142

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           +LD+M+GEGP+ARSVKI+L  FTL+ ATTR G+LTNPL+DRFGI  RL FYE  DL TIV
Sbjct: 143 RLDIMIGEGPAARSVKIDLPPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYENRDLTTIV 202

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R A+L  L + +E A E+A RSRGTPRIA RLLRRVRDFA+V +   I   +ADAAL  
Sbjct: 203 SRSAQLLQLDMDEEGAMEVAKRSRGTPRIANRLLRRVRDFADVKNNGVIDAAVADAALSM 262

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D  G D +D ++L  +   FGGGPVG++ ++A + E  D IED+IEPY+IQQGF+QR
Sbjct: 263 LDVDAQGLDVMDRKFLEAVLHKFGGGPVGLDNVAAAIGESTDTIEDVIEPYLIQQGFLQR 322

Query: 313 TPRGRLLMPIAWQHLGIDI 331
           TPRGR+    A+ H G+ +
Sbjct: 323 TPRGRMATERAYLHFGLPV 341


>gi|241766522|ref|ZP_04764386.1| Holliday junction DNA helicase RuvB [Acidovorax delafieldii 2AN]
 gi|241363255|gb|EER58814.1| Holliday junction DNA helicase RuvB [Acidovorax delafieldii 2AN]
          Length = 352

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 191/320 (59%), Positives = 239/320 (74%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           QE+A    LRP+ L+E+ GQ +A   L++FI AA+ R EALDHVL  GPPGLGKTTL+ +
Sbjct: 25  QEEAIERALRPKLLQEYVGQAKAREQLEIFIGAARKRGEALDHVLLFGPPGLGKTTLSHI 84

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +A ELGVN R TSGPV+ K  DLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+Q
Sbjct: 85  IAAELGVNLRQTSGPVLEKPKDLAALLTNLEKNDVLFIDEIHRLSPVVEEILYPALEDYQ 144

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           +D+M+GEGP+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  E+L  IV 
Sbjct: 145 IDIMIGEGPAARSIKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTPEELARIVT 204

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A L G  + DE   E+A RSRGTPRIA RLLRRVRD+AEV  +  ITR+IA+ AL  L
Sbjct: 205 RSAGLLGTPMDDEGGFELARRSRGTPRIANRLLRRVRDYAEVKGSGRITRDIANRALAML 264

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D  GFD +D + L  +   F GGPVG++ I+A + E    IED+IEPY+IQQG++QRT
Sbjct: 265 DVDPQGFDVMDRKLLEALIHRFDGGPVGLDNIAASIGEEAGTIEDVIEPYLIQQGYLQRT 324

Query: 314 PRGRLLMPIAWQHLGIDIPH 333
           PRGR+    A++HLG+  P 
Sbjct: 325 PRGRIATLAAYRHLGVTPPQ 344


>gi|28198791|ref|NP_779105.1| Holliday junction DNA helicase B [Xylella fastidiosa Temecula1]
 gi|182681490|ref|YP_001829650.1| Holliday junction DNA helicase RuvB [Xylella fastidiosa M23]
 gi|32130011|sp|Q87D00|RUVB_XYLFT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|238691038|sp|B2I4T1|RUVB_XYLF2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|28056882|gb|AAO28754.1| holliday junction binding protein, DNA helicase [Xylella fastidiosa
           Temecula1]
 gi|182631600|gb|ACB92376.1| Holliday junction DNA helicase RuvB [Xylella fastidiosa M23]
 gi|307579944|gb|ADN63913.1| Holliday junction DNA helicase RuvB [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 343

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 198/329 (60%), Positives = 244/329 (74%), Gaps = 3/329 (0%)

Query: 2   MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MDR  ++    ++ED  I + +RP+ L ++ GQ      + ++I+A KARAEALDHVL  
Sbjct: 1   MDR--IIDSAATREDEAIEVSIRPKRLADYLGQQPVREQMDIYIQATKARAEALDHVLIF 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTL+ V+A ELGV  R TSGPVI KAGDLAALLTNL+  DVLFIDEIHRLS +
Sbjct: 59  GPPGLGKTTLSHVIAYELGVKLRVTSGPVIEKAGDLAALLTNLQPYDVLFIDEIHRLSPV 118

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDFQ+D+M+GEGP+ARS+KI+L  FTLI ATTR GLLT PL+DRFGI  RL
Sbjct: 119 VEEVLYPAMEDFQIDIMIGEGPAARSIKIDLPPFTLIGATTRTGLLTAPLRDRFGIVQRL 178

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  EDL  IV+R A +  +  T E A EIA R+RGTPRIA RLLRRVRD+AEV     
Sbjct: 179 EFYSPEDLARIVRRSAGILNIDCTTEGAAEIAQRARGTPRIANRLLRRVRDYAEVKADGQ 238

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           IT E+A AA+  L +D+ GFD+LD R L  I   F GGPVGIE+++A LSE R  +ED++
Sbjct: 239 ITIEVAQAAMQMLKVDQGGFDELDRRLLHTIVEYFDGGPVGIESLAASLSEERGTLEDVV 298

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           EPY+IQQGF+ RT RGR+    A+QHL +
Sbjct: 299 EPYLIQQGFLVRTARGRMATDKAYQHLAL 327


>gi|15838500|ref|NP_299188.1| Holliday junction DNA helicase RuvB [Xylella fastidiosa 9a5c]
 gi|20140310|sp|Q9PC79|RUVB_XYLFA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|9106997|gb|AAF84708.1|AE004010_5 holliday junction binding protein, DNA helicase [Xylella fastidiosa
           9a5c]
          Length = 343

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 198/329 (60%), Positives = 243/329 (73%), Gaps = 3/329 (0%)

Query: 2   MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MDR  ++    + ED  I + +RP+ L ++ GQ      + ++I+A KARAEALDHVL  
Sbjct: 1   MDR--IIDTAATSEDEAIEVSIRPKRLADYLGQQPVREQMDIYIQATKARAEALDHVLIF 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTL+ V+A ELGV  R TSGPVI KAGDLAALLTNL+  DVLFIDEIHRLS +
Sbjct: 59  GPPGLGKTTLSHVIAYELGVKLRVTSGPVIEKAGDLAALLTNLQPYDVLFIDEIHRLSPV 118

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDFQ+D+M+GEGP+ARS+KI+L  FTLI ATTR GLLT PL+DRFGI  RL
Sbjct: 119 VEEVLYPAMEDFQIDIMIGEGPAARSIKIDLPPFTLIGATTRTGLLTAPLRDRFGIVQRL 178

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  EDL  IV+R A +  +  T E A EIA R+RGTPRIA RLLRRVRD+AEV     
Sbjct: 179 EFYSPEDLARIVRRSAGILNIDCTTEGAAEIAQRARGTPRIANRLLRRVRDYAEVKAGGQ 238

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           IT E+A AA+  L +D+ GFD+LD R L  I   F GGPVGIE+++A LSE R  +ED++
Sbjct: 239 ITIEVAQAAMQMLKVDQGGFDELDRRLLHTIVEYFDGGPVGIESLAASLSEERGTLEDVV 298

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           EPY+IQQGF+ RT RGR+    A+QHL +
Sbjct: 299 EPYLIQQGFLVRTARGRMATDKAYQHLAL 327


>gi|330959266|gb|EGH59526.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 353

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 188/313 (60%), Positives = 240/313 (76%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP +L ++ GQ      +++FI+AA+ R+EALDH L  GPPGLGKTTLA ++A+E+GV+
Sbjct: 24  IRPLSLADYIGQPTVREQMELFIQAARGRSEALDHTLIFGPPGLGKTTLANIIAQEMGVS 83

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            +STSGPV+ + GDLAA+LTNLE  DVLFIDEIHRLS IVEE+LYPAMEDFQLD+M+GEG
Sbjct: 84  IKSTSGPVLERPGDLAAILTNLEPNDVLFIDEIHRLSPIVEEVLYPAMEDFQLDIMIGEG 143

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY I DL TIV R A + GL
Sbjct: 144 PAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQRLEFYNIADLSTIVSRSAGILGL 203

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  + A EIA R+RGTPRIA RLLRRVRDFAEV     ITR+ AD AL  L +D+ GFD
Sbjct: 204 VIEPKGAFEIARRARGTPRIANRLLRRVRDFAEVRGNGQITRQTADKALNLLDVDEHGFD 263

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             D R L  +   F GGPVG+++++A +SE R  IED++EPY+IQQG+I RTPRGR++  
Sbjct: 264 HQDRRLLLTMIEKFDGGPVGVDSLAAAISEERHTIEDVLEPYLIQQGYIMRTPRGRVVTR 323

Query: 322 IAWQHLGIDIPHR 334
            A+ H G++IP R
Sbjct: 324 HAYLHFGLNIPAR 336


>gi|330828298|ref|YP_004391250.1| Holliday junction ATP-dependent DNA helicase ruvB [Aeromonas
           veronii B565]
 gi|328803434|gb|AEB48633.1| Holliday junction ATP-dependent DNA helicase ruvB [Aeromonas
           veronii B565]
          Length = 336

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 190/333 (57%), Positives = 249/333 (74%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S + ++ED  I   +RP+ L ++TGQ   C  +++FIEAA+ R EALDH+L 
Sbjct: 1   MIEADRLISASAAREDDIIDRAIRPKKLADYTGQDTVCEQMEIFIEAARQRGEALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN ++TSGPV+ KAGDLAALLTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNIKTTSGPVLEKAGDLAALLTNLEPNDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY ++DL  IV R A+  GL +T++ A E+A RSRGTPRIA RLLRRVRDFA+V    
Sbjct: 181 LEFYNVKDLTDIVSRSARCLGLDMTEDGAIEVARRSRGTPRIANRLLRRVRDFAQVKSDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I   IA  A+  L +D  GFD +D + L  +   F GGPVG++ ++A + E +D IED+
Sbjct: 241 RIDGPIAARAMDMLDVDNEGFDFMDRKLLLAVIDKFMGGPVGLDNLAAAIGEEKDTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           +EPY+IQQG++QRTPRGR+    A+ H G+  P
Sbjct: 301 LEPYLIQQGYLQRTPRGRIATTRAYAHFGLQRP 333


>gi|311104196|ref|YP_003977049.1| holliday junction DNA helicase RuvB [Achromobacter xylosoxidans A8]
 gi|310758885|gb|ADP14334.1| holliday junction DNA helicase RuvB [Achromobacter xylosoxidans A8]
          Length = 357

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 188/311 (60%), Positives = 230/311 (73%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L+E+ GQ  A   L++FI AAK R EALDHVL  GPPGLGKTTLA ++A E+GV 
Sbjct: 34  LRPKALQEYVGQHRAREQLEIFIAAAKKRGEALDHVLLFGPPGLGKTTLAHIIAHEMGVQ 93

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGPV+ + GDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+EDFQ+D+++GEG
Sbjct: 94  LRQTSGPVLERPGDLAALLTNLEKNDVLFIDEIHRLSPVVEEILYPALEDFQIDILIGEG 153

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY   DL  IV R A L   
Sbjct: 154 PAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYNAADLGHIVTRSAGLLNA 213

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
           A+T E A E+A R+RGTPRIA RLLRRVRD+AEV    TI  E+A  AL  L +D  G D
Sbjct: 214 AITPEGAAEVARRARGTPRIANRLLRRVRDYAEVKAGGTIDAEVAGRALAMLEVDPQGLD 273

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  I   F GGPVG+++++A + E RD IED+IEPY+IQ G++QRTPRGR    
Sbjct: 274 LMDRKLLEAIIHKFDGGPVGVDSLAAAIGEERDTIEDVIEPYLIQHGYLQRTPRGRTATL 333

Query: 322 IAWQHLGIDIP 332
             W+HLG+  P
Sbjct: 334 TTWRHLGLTPP 344


>gi|289626497|ref|ZP_06459451.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289650943|ref|ZP_06482286.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|298488208|ref|ZP_07006244.1| Holliday junction DNA helicase RuvB [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298157266|gb|EFH98350.1| Holliday junction DNA helicase RuvB [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|330868613|gb|EGH03322.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv.
           aesculi str. 0893_23]
 gi|330988970|gb|EGH87073.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 353

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 188/313 (60%), Positives = 239/313 (76%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP +L ++ GQ      +++FI+AA+ R EALDH L  GPPGLGKTTLA ++A+E+GV+
Sbjct: 24  IRPLSLADYIGQPTVREQMELFIQAARGRNEALDHTLIFGPPGLGKTTLANIIAQEMGVS 83

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            +STSGPV+ + GDLAA+LTNLE  DVLFIDEIHRLS IVEE+LYPAMEDFQLD+M+GEG
Sbjct: 84  IKSTSGPVLERPGDLAAILTNLEPNDVLFIDEIHRLSPIVEEVLYPAMEDFQLDIMIGEG 143

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY I DL TIV R A + GL
Sbjct: 144 PAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQRLEFYNIADLSTIVSRSAGILGL 203

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  + A EIA R+RGTPRIA RLLRRVRDFAEV     ITR+ AD AL  L +D+ GFD
Sbjct: 204 VIEPQGAFEIARRARGTPRIANRLLRRVRDFAEVRGNGQITRQTADKALNLLDVDEHGFD 263

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             D R L  +   F GGPVG+++++A +SE R  IED++EPY+IQQG+I RTPRGR++  
Sbjct: 264 HQDRRLLLTMIEKFDGGPVGVDSLAAAISEERHTIEDVLEPYLIQQGYIMRTPRGRVVTR 323

Query: 322 IAWQHLGIDIPHR 334
            A+ H G++IP R
Sbjct: 324 HAYLHFGLNIPSR 336


>gi|319786207|ref|YP_004145682.1| Holliday junction DNA helicase RuvB [Pseudoxanthomonas suwonensis
           11-1]
 gi|317464719|gb|ADV26451.1| Holliday junction DNA helicase RuvB [Pseudoxanthomonas suwonensis
           11-1]
          Length = 341

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 194/335 (57%), Positives = 249/335 (74%), Gaps = 1/335 (0%)

Query: 1   MMDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M +   +L    ++ED  + + +RP+ L+E+ GQ      L ++IEAA+AR EALDHVL 
Sbjct: 1   MSEHRSILGAGATREDEALEASIRPQRLDEYLGQQPVREQLGIYIEAARARGEALDHVLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTL+ V+A ELGVN R TSGPVI KAGDLAALLTNL+  DVLFIDEIHR+S 
Sbjct: 61  FGPPGLGKTTLSHVIANELGVNLRVTSGPVIEKAGDLAALLTNLQPHDVLFIDEIHRMSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMEDFQ+D+M+GEGP+ARS+K++L  FTLI ATTR GLLT PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDFQIDIMIGEGPAARSIKLDLPPFTLIGATTRAGLLTAPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY  E+L  IV+R A++ G+    + A EIA R+RGTPRIA RLLRRVRD+A+V    
Sbjct: 181 LEFYTPEELTKIVRRSARILGIDCEADGAGEIARRARGTPRIANRLLRRVRDYAQVRAGG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  ++A AA+  L +D  GFD+LD R L  I  +F GGPVG+E+++A LSE R  +ED+
Sbjct: 241 RIDMDVAQAAMAMLKVDPEGFDELDRRLLNTIIGHFDGGPVGVESLAASLSEERGTLEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           IEPY+IQQGF+ RT RGR+    A++HLG+ +P R
Sbjct: 301 IEPYLIQQGFLVRTARGRMATSKAYRHLGLAVPTR 335


>gi|331016440|gb|EGH96496.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 353

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 195/337 (57%), Positives = 251/337 (74%), Gaps = 4/337 (1%)

Query: 1   MMDREGLLSRNVSQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M+D + L++  V   D D  L   +RP +L ++ GQ      +++FI+AA+ R+EALDH 
Sbjct: 1   MIDADRLIT-AVGGRDRDEQLDRAIRPLSLADYIGQPTVREQMELFIQAARGRSEALDHT 59

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTLA ++A+E+GV+ +STSGPV+ + GDLAA+LTNLE  DVLFIDEIHRL
Sbjct: 60  LIFGPPGLGKTTLANIIAQEMGVSIKSTSGPVLERPGDLAAILTNLEPNDVLFIDEIHRL 119

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           S IVEE+LYPAMEDFQLD+M+GEGP+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI 
Sbjct: 120 SPIVEEVLYPAMEDFQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIV 179

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            RL FY I DL TIV R A + GL +  E A EIA R+RGTPRIA RLLRRVRDFA+V  
Sbjct: 180 QRLEFYNIADLSTIVARSAGILGLVIEPEGAFEIARRARGTPRIANRLLRRVRDFAQVRG 239

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
              ITR+ AD AL  L +D+ GFD  D R L  +   F GGPVG+++++A +SE R  IE
Sbjct: 240 NGQITRQTADKALNLLDVDEHGFDHQDRRLLLTMIEKFDGGPVGVDSLAAAISEERHTIE 299

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           D++EPY+IQQG+I RTPRGR++   A+ H G++IP R
Sbjct: 300 DVLEPYLIQQGYIMRTPRGRVVTRHAYLHFGLNIPTR 336


>gi|59801175|ref|YP_207887.1| Holliday junction DNA helicase B [Neisseria gonorrhoeae FA 1090]
 gi|194098681|ref|YP_002001743.1| Holliday junction DNA helicase RuvB [Neisseria gonorrhoeae
           NCCP11945]
 gi|239998989|ref|ZP_04718913.1| Holliday junction DNA helicase RuvB [Neisseria gonorrhoeae 35/02]
 gi|240125761|ref|ZP_04738647.1| Holliday junction DNA helicase RuvB [Neisseria gonorrhoeae
           SK-92-679]
 gi|240128283|ref|ZP_04740944.1| Holliday junction DNA helicase RuvB [Neisseria gonorrhoeae
           SK-93-1035]
 gi|260440459|ref|ZP_05794275.1| Holliday junction DNA helicase RuvB [Neisseria gonorrhoeae DGI2]
 gi|268594837|ref|ZP_06129004.1| holliday junction DNA helicase B [Neisseria gonorrhoeae 35/02]
 gi|268684359|ref|ZP_06151221.1| holliday junction DNA helicase B [Neisseria gonorrhoeae SK-92-679]
 gi|268686680|ref|ZP_06153542.1| holliday junction DNA helicase B [Neisseria gonorrhoeae SK-93-1035]
 gi|291043758|ref|ZP_06569474.1| holliday junction DNA helicase RuvB [Neisseria gonorrhoeae DGI2]
 gi|293399043|ref|ZP_06643208.1| Holliday junction DNA helicase RuvB [Neisseria gonorrhoeae F62]
 gi|81311201|sp|Q5F8L2|RUVB_NEIG1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|238690208|sp|B4RLV8|RUVB_NEIG2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|59718070|gb|AAW89475.1| putative Holliday junction DNA helicase [Neisseria gonorrhoeae FA
           1090]
 gi|193933971|gb|ACF29795.1| Holliday junction DNA helicase RuvB [Neisseria gonorrhoeae
           NCCP11945]
 gi|268548226|gb|EEZ43644.1| holliday junction DNA helicase B [Neisseria gonorrhoeae 35/02]
 gi|268624643|gb|EEZ57043.1| holliday junction DNA helicase B [Neisseria gonorrhoeae SK-92-679]
 gi|268626964|gb|EEZ59364.1| holliday junction DNA helicase B [Neisseria gonorrhoeae SK-93-1035]
 gi|291012221|gb|EFE04210.1| holliday junction DNA helicase RuvB [Neisseria gonorrhoeae DGI2]
 gi|291610457|gb|EFF39567.1| Holliday junction DNA helicase RuvB [Neisseria gonorrhoeae F62]
 gi|317164281|gb|ADV07822.1| Holliday junction DNA helicase RuvB [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 343

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 194/319 (60%), Positives = 244/319 (76%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           +QE+     LRP+TL+++ GQ +A   L +FI+AAK R EALDHVL  GPPGLGKTTLA 
Sbjct: 23  AQEELLERALRPKTLDDYIGQHKAKEQLAIFIQAAKKRGEALDHVLLFGPPGLGKTTLAH 82

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++A+ELGVN R TSGPV+ +AGDLAALLTNL+  DVLFIDEIHRLS +VEEILYPA+ED+
Sbjct: 83  IIAKELGVNLRQTSGPVLERAGDLAALLTNLDPHDVLFIDEIHRLSPVVEEILYPALEDY 142

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           +LD+M+GEGP+ARSVKI+L  FTL+ ATTR G+LTNPL+DRFGI  RL FYE  DL TIV
Sbjct: 143 RLDIMIGEGPAARSVKIDLPPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYENRDLTTIV 202

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R A+L  L + +E A E+A RSRGTPRIA RLLRRVRDFA+V +   I   +ADAAL  
Sbjct: 203 SRSAQLLQLDMGEEGAMEVAKRSRGTPRIANRLLRRVRDFADVKNNGVIDAAVADAALSM 262

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D  G D +D ++L  +   FGGGPVG++ ++A + E  D IED+IEPY+IQQGF+QR
Sbjct: 263 LDVDAQGLDVMDRKFLEAVLHKFGGGPVGLDNVAAAIGESTDTIEDVIEPYLIQQGFLQR 322

Query: 313 TPRGRLLMPIAWQHLGIDI 331
           TPRGR+    A+ H G+ +
Sbjct: 323 TPRGRMATERAYLHFGLPV 341


>gi|282850100|ref|ZP_06259482.1| Holliday junction DNA helicase RuvB [Veillonella parvula ATCC
           17745]
 gi|282580289|gb|EFB85690.1| Holliday junction DNA helicase RuvB [Veillonella parvula ATCC
           17745]
          Length = 334

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 191/323 (59%), Positives = 241/323 (74%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L+     +ED     LRP+   E+ GQ EA  NL V+I+AAK R EALDHVL  GPPGLG
Sbjct: 7   LVGNGEHEEDIWQYSLRPKLFNEYVGQEEAKGNLNVYIQAAKQRGEALDHVLLYGPPGLG 66

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTTLA ++A ELGVNFR TSGP I K+GDLAA+LTNL+D DVLFIDEIHRLS  VEE+LY
Sbjct: 67  KTTLAGIIANELGVNFRITSGPAIEKSGDLAAILTNLDDHDVLFIDEIHRLSRSVEEVLY 126

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            AMED+ +D+++G+GPSAR+V+I+L +FTL+ ATTR G L  PL+DRFGI  RL +Y+  
Sbjct: 127 SAMEDYAIDIIIGKGPSARTVRIDLPKFTLVGATTRAGALAAPLRDRFGIINRLEYYKQP 186

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +L+ IV R A++  + +    A EIA RSRGTPRIA RLL+RVRDFA+V     IT+EIA
Sbjct: 187 ELEFIVSRAAEILNIGIVPTGASEIARRSRGTPRIANRLLKRVRDFAQVIGDGVITQEIA 246

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           D AL RL +DKMG D++D R L  I   + GGPVGI+TI+A +SE RD IED+ EPY++Q
Sbjct: 247 DEALQRLYVDKMGLDRIDRRVLECIIEKYDGGPVGIDTIAAAISEERDTIEDVYEPYLMQ 306

Query: 307 QGFIQRTPRGRLLMPIAWQHLGI 329
            GF+ RTPRGR+   +A++HLGI
Sbjct: 307 LGFLGRTPRGRVATKLAYEHLGI 329


>gi|71736556|ref|YP_275912.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|97190209|sp|Q48FC5|RUVB_PSE14 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|71557109|gb|AAZ36320.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320323051|gb|EFW79140.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320329677|gb|EFW85666.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330877978|gb|EGH12127.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 353

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 188/313 (60%), Positives = 239/313 (76%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP +L ++ GQ      +++FI+AA+ R EALDH L  GPPGLGKTTLA ++A+E+GV+
Sbjct: 24  IRPLSLADYIGQPTVREQMELFIQAARGRNEALDHTLIFGPPGLGKTTLANIIAQEMGVS 83

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            +STSGPV+ + GDLAA+LTNLE  DVLFIDEIHRLS IVEE+LYPAMEDFQLD+M+GEG
Sbjct: 84  IKSTSGPVLERPGDLAAILTNLEPNDVLFIDEIHRLSPIVEEVLYPAMEDFQLDIMIGEG 143

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY I DL TIV R A + GL
Sbjct: 144 PAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQRLEFYNIADLSTIVSRSAGILGL 203

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  + A EIA R+RGTPRIA RLLRRVRDFAEV     ITR+ AD AL  L +D+ GFD
Sbjct: 204 VIEPQGAFEIARRARGTPRIANRLLRRVRDFAEVRGNGQITRQTADKALNLLDVDEHGFD 263

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             D R L  +   F GGPVG+++++A +SE R  IED++EPY+IQQG+I RTPRGR++  
Sbjct: 264 HQDRRLLLTMIEKFDGGPVGVDSLAAAISEERHTIEDVLEPYLIQQGYIMRTPRGRVVTR 323

Query: 322 IAWQHLGIDIPHR 334
            A+ H G++IP R
Sbjct: 324 HAYLHFGLNIPSR 336


>gi|319778461|ref|YP_004129374.1| Holliday junction DNA helicase RuvB [Taylorella equigenitalis MCE9]
 gi|317108485|gb|ADU91231.1| Holliday junction DNA helicase RuvB [Taylorella equigenitalis MCE9]
          Length = 363

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 188/332 (56%), Positives = 242/332 (72%), Gaps = 2/332 (0%)

Query: 3   DREGLLSRNV--SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           +  G++  ++  S+ED+    LRP+TL+++ GQ + C  L++FI+AAK R EALDHVL  
Sbjct: 12  NNRGIIQNDIADSREDSFEKALRPKTLDDYKGQDKVCQQLEIFIKAAKNRGEALDHVLLF 71

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A E+G   R TSGPV+ K GDLAA+LTNL   DVLFIDEIHRLS +
Sbjct: 72  GPPGLGKTTLAHIIANEMGTKMRQTSGPVLEKPGDLAAILTNLNKNDVLFIDEIHRLSPV 131

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILYPA+EDFQ+D+M+G+GP+ARS+KI+L  FTL+ ATTR G+LTNPL++RFGI  RL
Sbjct: 132 VEEILYPALEDFQIDIMIGDGPAARSIKIDLQPFTLVGATTRAGMLTNPLRNRFGIISRL 191

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  E L  IV R A+L G  + ++ A EIA RSRGTPRIA RLLRRVRDFA+V +   
Sbjct: 192 EFYSTEHLAHIVTRSARLLGANIEEKGAFEIARRSRGTPRIANRLLRRVRDFADVKNNGL 251

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I+ EIA  AL  L +D +G D +D R L  I   F GGPVG++ ++A + E    IE++I
Sbjct: 252 ISDEIAAEALGMLEVDPIGLDNMDRRLLEAILLKFQGGPVGVDNLAAAIGEESHTIEEII 311

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EPY+IQ GFIQRTPRGR+    AW H  ++ P
Sbjct: 312 EPYLIQHGFIQRTPRGRMATIHAWNHFNLNPP 343


>gi|66767464|ref|YP_242226.1| Holliday junction DNA helicase RuvB [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|81306556|sp|Q4UXL7|RUVB_XANC8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|66572796|gb|AAY48206.1| holliday junction binding protein, DNA helicase [Xanthomonas
           campestris pv. campestris str. 8004]
          Length = 346

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 193/332 (58%), Positives = 247/332 (74%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M ++  + S    +++A  + +RP+ L ++ GQ      ++++I+AAKAR EA+DHVL  
Sbjct: 1   MTEQRTIASSATREDEAADASIRPKRLADYLGQQPVRDQMEIYIQAAKARGEAMDHVLIF 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTL+ V+A ELGVN R TSGPVI KAGDLAALLTNL+  DVLFIDEIHRLS +
Sbjct: 61  GPPGLGKTTLSHVIANELGVNLRVTSGPVIEKAGDLAALLTNLQPHDVLFIDEIHRLSPV 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDFQ+D+M+G+GP+ARS+KI+L  FTLI ATTR GLLT PL+DRFGI  RL
Sbjct: 121 VEEVLYPAMEDFQIDIMIGDGPAARSIKIDLPPFTLIGATTRAGLLTAPLRDRFGIVQRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  ++L  IV R A + G+  T + A EIA R+RGTPRIA RLLRRVRDFA+V  A  
Sbjct: 181 EFYSPQELTRIVIRSAAILGIDCTPDGAAEIARRARGTPRIANRLLRRVRDFAQVKAAGH 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I   +A AA+  L +D  GFD+LD R L  I  +F GGPVG+E+++A LSE R  +ED+I
Sbjct: 241 IDLAVAQAAMQMLKVDPEGFDELDRRMLRTIVDHFDGGPVGVESLAASLSEERGTLEDVI 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EPY+IQQGF+ RT RGR++ P A+ HLG+  P
Sbjct: 301 EPYLIQQGFLIRTARGRMVTPKAYLHLGLKPP 332


>gi|304396234|ref|ZP_07378116.1| Holliday junction DNA helicase RuvB [Pantoea sp. aB]
 gi|304356603|gb|EFM20968.1| Holliday junction DNA helicase RuvB [Pantoea sp. aB]
          Length = 334

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 188/319 (58%), Positives = 246/319 (77%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           ++S+E+     +RP+ L E+ GQ +    +++FI+AA+ R +ALDH+L  GPPGLGKTTL
Sbjct: 12  SISEEEVIDRAIRPKMLTEYVGQPQVREQMEIFIKAAQLRGDALDHLLIFGPPGLGKTTL 71

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           A +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS +VEEILYPAME
Sbjct: 72  ANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEILYPAME 131

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           D+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  RL FY+++DL+ 
Sbjct: 132 DYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVKDLQH 191

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           IV R A   GLA++DE A EIA R+RGTPRIA RLLRRVRDFAEV     ++ E++ +AL
Sbjct: 192 IVGRSAACLGLALSDEGALEIARRARGTPRIANRLLRRVRDFAEVRANGDLSGEVSCSAL 251

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
             L +D  GFD +D + L  I   F GGPVG++ ++A + E R+ IED+IEP++IQQGFI
Sbjct: 252 DMLNVDSEGFDYMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETIEDVIEPFLIQQGFI 311

Query: 311 QRTPRGRLLMPIAWQHLGI 329
           QRTPRGR+    A++H G+
Sbjct: 312 QRTPRGRMATQHAYRHFGM 330


>gi|77460628|ref|YP_350135.1| Holliday junction DNA helicase RuvB [Pseudomonas fluorescens Pf0-1]
 gi|97190226|sp|Q3K7W0|RUVB_PSEPF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|77384631|gb|ABA76144.1| holliday junction DNA helicase [Pseudomonas fluorescens Pf0-1]
          Length = 353

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 188/313 (60%), Positives = 239/313 (76%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP +L E+ GQ      +++FI+AA+ R+E+LDH L  GPPGLGKTTLA ++A+E+GV+
Sbjct: 25  IRPVSLAEYIGQPTVREQMELFIQAARGRSESLDHTLIFGPPGLGKTTLANIIAQEMGVS 84

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            +STSGPV+ + GDLAALLTNLE  DVLFIDEIHRLS IVEE+LYPAMEDFQLD+M+GEG
Sbjct: 85  IKSTSGPVLERPGDLAALLTNLEPHDVLFIDEIHRLSPIVEEVLYPAMEDFQLDIMIGEG 144

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY   DL TIV R A + GL
Sbjct: 145 PAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQRLEFYSTADLATIVSRSANILGL 204

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  E + EIA R+RGTPRIA RLLRRVRDFAEV     IT+ +AD AL  L +D+ GFD
Sbjct: 205 PLDPEGSFEIARRARGTPRIANRLLRRVRDFAEVRAKGHITKSVADLALNLLDVDEHGFD 264

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             D R L  +   F GGPVGI++++A +SE R  IED++EPY+IQQG+I RTPRGR++  
Sbjct: 265 HQDRRLLLTMIEKFDGGPVGIDSLAAAISEERHTIEDVLEPYLIQQGYIMRTPRGRVVTR 324

Query: 322 IAWQHLGIDIPHR 334
            A+ H G++IP R
Sbjct: 325 HAYLHFGLNIPTR 337


>gi|257487009|ref|ZP_05641050.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|331009349|gb|EGH89405.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 353

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 188/313 (60%), Positives = 239/313 (76%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP +L ++ GQ      +++FI+AA+ R EALDH L  GPPGLGKTTLA ++A+E+GV+
Sbjct: 24  IRPLSLVDYIGQPTVREQMELFIQAARGRNEALDHTLIFGPPGLGKTTLANIIAQEMGVS 83

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            +STSGPV+ + GDLAA+LTNLE  DVLFIDEIHRLS IVEE+LYPAMEDFQLD+M+GEG
Sbjct: 84  IKSTSGPVLERPGDLAAILTNLEPNDVLFIDEIHRLSPIVEEVLYPAMEDFQLDIMIGEG 143

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY I DL TIV R A + GL
Sbjct: 144 PAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQRLEFYNIADLSTIVSRSAGILGL 203

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  + A EIA R+RGTPRIA RLLRRVRDFAEV     ITR+ AD AL  L +D+ GFD
Sbjct: 204 VIEPQGAFEIARRARGTPRIANRLLRRVRDFAEVRGNGQITRQTADKALNLLDVDEHGFD 263

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             D R L  +   F GGPVG+++++A +SE R  IED++EPY+IQQG+I RTPRGR++  
Sbjct: 264 HQDRRLLLTMIEKFDGGPVGVDSLAAAISEERHTIEDVLEPYLIQQGYIMRTPRGRVVTR 323

Query: 322 IAWQHLGIDIPHR 334
            A+ H G++IP R
Sbjct: 324 HAYLHFGLNIPSR 336


>gi|332531312|ref|ZP_08407223.1| Holliday junction DNA helicase RuvB [Hylemonella gracilis ATCC
           19624]
 gi|332039226|gb|EGI75641.1| Holliday junction DNA helicase RuvB [Hylemonella gracilis ATCC
           19624]
          Length = 358

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 188/312 (60%), Positives = 236/312 (75%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L+E+ GQ++    L++FI AA+ R EALDHVL  GPPGLGKTTL+ ++A+ELGVN
Sbjct: 31  LRPKLLDEYVGQLKVREQLEIFIGAARKRGEALDHVLLFGPPGLGKTTLSHIIAQELGVN 90

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGPV+ K  DLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+Q+D+M+GEG
Sbjct: 91  LRQTSGPVLEKPKDLAALLTNLEKNDVLFIDEIHRLSPVVEEILYPALEDYQIDIMIGEG 150

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  E+L  IV R AKL   
Sbjct: 151 PAARSIKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTAEELTRIVTRSAKLLNA 210

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + D  A EIA RSRGTPRIA RLLRRVRD+A+V  A  IT+E+A  AL+ L +D  GFD
Sbjct: 211 PMDDAGASEIARRSRGTPRIANRLLRRVRDYADVKGAGHITQEMAQKALVMLDVDPQGFD 270

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   F GGPVG++ I+A + E    IED+IEPY+IQQGF+QRTPRGR+   
Sbjct: 271 VMDRKLLEAVIHRFDGGPVGLDNIAASIGEEAGTIEDVIEPYLIQQGFLQRTPRGRVATL 330

Query: 322 IAWQHLGIDIPH 333
            A++HLG+  P 
Sbjct: 331 AAYRHLGVAPPQ 342


>gi|188533632|ref|YP_001907429.1| Holliday junction DNA helicase RuvB [Erwinia tasmaniensis Et1/99]
 gi|238691997|sp|B2VJ95|RUVB_ERWT9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|188028674|emb|CAO96536.1| Holliday junction ATP-dependent DNA helicase [Erwinia tasmaniensis
           Et1/99]
          Length = 334

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 193/330 (58%), Positives = 248/330 (75%), Gaps = 1/330 (0%)

Query: 1   MMDREGLLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S  V S+E+     +RP+ L E+ GQ      +++FI+AA  R +ALDH+L 
Sbjct: 1   MIEADRLVSAGVISEEEVIDRAIRPKMLAEYVGQPVVREQMEIFIKAAMMRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAALLTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAALLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY +EDL+ IV R A   GL ++DE A EIA R+RGTPRIA RLLRRVRDFAEV    
Sbjct: 181 LEFYRVEDLQHIVGRSAACLGLPLSDEGALEIARRARGTPRIANRLLRRVRDFAEVRAGG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            ++ ++A  AL  L++D  GFD +D + L  I   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 EMSGDVASRALDMLSVDSEGFDYMDRKLLLAIIDKFTGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           +EPY+IQQGFIQRTPRGR+    A++H GI
Sbjct: 301 LEPYLIQQGFIQRTPRGRMATQHAYKHFGI 330


>gi|26987952|ref|NP_743377.1| Holliday junction DNA helicase RuvB [Pseudomonas putida KT2440]
 gi|37999645|sp|Q88NJ0|RUVB_PSEPK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|24982664|gb|AAN66841.1|AE016312_12 Holliday junction DNA helicase RuvB [Pseudomonas putida KT2440]
 gi|313497568|gb|ADR58934.1| RuvB [Pseudomonas putida BIRD-1]
          Length = 348

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 186/321 (57%), Positives = 242/321 (75%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           +E+     +RP +L+E+ GQ      + +FI+AA+ R E+LDH L  GPPGLGKTTLA +
Sbjct: 15  REEVQDRAIRPLSLDEYIGQPVVREQMALFIQAARGRGESLDHTLIFGPPGLGKTTLANI 74

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +A E+GV+ +STSGP++ + GDLAA+LTNLE  DVLFIDEIHRLS +VEE+LYPAMEDFQ
Sbjct: 75  IAHEMGVSVKSTSGPILERPGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDFQ 134

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           LD+M+GEGP+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  +DL TIV 
Sbjct: 135 LDIMIGEGPAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQRLEFYNDKDLSTIVS 194

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A + GLA+ D+ A EIA R+RGTPRIA RLLRRVRD+AEV     IT+ +AD AL  L
Sbjct: 195 RSANILGLAIEDQGAYEIARRARGTPRIANRLLRRVRDYAEVRGKGQITKAVADMALNLL 254

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D+ GFD  D R L  +   F GGPVG++ ++A +SE R  IED++EPY+IQQG+I RT
Sbjct: 255 DVDERGFDHSDRRLLLTMIEKFDGGPVGVDNLAAAISEERHTIEDVLEPYLIQQGYIMRT 314

Query: 314 PRGRLLMPIAWQHLGIDIPHR 334
           PRGR++   A+ H G++IP R
Sbjct: 315 PRGRVVTRHAYLHFGLNIPGR 335


>gi|148546489|ref|YP_001266591.1| Holliday junction DNA helicase RuvB [Pseudomonas putida F1]
 gi|166231541|sp|A5VZU7|RUVB_PSEP1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|148510547|gb|ABQ77407.1| Holliday junction DNA helicase subunit RuvB [Pseudomonas putida F1]
          Length = 348

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 186/321 (57%), Positives = 242/321 (75%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           +E+     +RP +L+E+ GQ      + +FI+AA+ R E+LDH L  GPPGLGKTTLA +
Sbjct: 15  REEVQDRAIRPLSLDEYIGQPVVREQMALFIQAARGRGESLDHTLIFGPPGLGKTTLANI 74

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +A E+GV+ +STSGP++ + GDLAA+LTNLE  DVLFIDEIHRLS +VEE+LYPAMEDFQ
Sbjct: 75  IAHEMGVSVKSTSGPILERPGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDFQ 134

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           LD+M+GEGP+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  +DL TIV 
Sbjct: 135 LDIMIGEGPAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQRLEFYNDKDLSTIVS 194

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A + GLA+ D+ A EIA R+RGTPRIA RLLRRVRD+AEV     IT+ +AD AL  L
Sbjct: 195 RSANILGLAIEDQGAYEIARRARGTPRIANRLLRRVRDYAEVRGKGQITKAVADMALNLL 254

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D+ GFD  D R L  +   F GGPVG++ ++A +SE R  IED++EPY+IQQG+I RT
Sbjct: 255 DVDERGFDHSDRRLLLTMIEKFDGGPVGVDNLAAAISEERHTIEDVLEPYLIQQGYIMRT 314

Query: 314 PRGRLLMPIAWQHLGIDIPHR 334
           PRGR++   A+ H G++IP R
Sbjct: 315 PRGRVVTRHAYLHFGLNIPGR 335


>gi|197284987|ref|YP_002150859.1| Holliday junction DNA helicase RuvB [Proteus mirabilis HI4320]
 gi|227355391|ref|ZP_03839792.1| Holliday junction ATP-dependent DNA helicase [Proteus mirabilis
           ATCC 29906]
 gi|238693146|sp|B4ETP8|RUVB_PROMH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|194682474|emb|CAR42409.1| Holliday junction ATP-dependent DNA helicase [Proteus mirabilis
           HI4320]
 gi|227164615|gb|EEI49486.1| Holliday junction ATP-dependent DNA helicase [Proteus mirabilis
           ATCC 29906]
          Length = 336

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 191/330 (57%), Positives = 246/330 (74%), Gaps = 2/330 (0%)

Query: 1   MMDREGLLSRNVSQEDADI--SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M++ + L+S ++ Q + +I    +RP+ L E+ GQ +    +++FI+AAK R +ALDH+L
Sbjct: 1   MIEADRLISADIQQPEEEIIDRAIRPKLLAEYVGQPQVREQMEIFIQAAKLRHDALDHLL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA ++A E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS
Sbjct: 61  IFGPPGLGKTTLANIIANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLS 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            +VEEILYPAMED+QLD+M+GEGP+ARS+KI+L  FTL+ ATTR G LT+PL+DRFGI  
Sbjct: 121 PVVEEILYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLVGATTRAGSLTSPLRDRFGIVQ 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           RL FY ++DL+ IV R A   GL +T E A +IAMRSRGTPRI  RLLRRVRDFA+V   
Sbjct: 181 RLEFYNVDDLQHIVARSASFMGLEITAEGARQIAMRSRGTPRITNRLLRRVRDFAQVKGN 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             I  +IA  AL  L +D  GFD LD + L  I   F GGPVG++ ++A + E R+ IED
Sbjct: 241 GEIDEDIASKALDMLNVDAAGFDYLDRKLLFAIIDKFMGGPVGLDNLAAAIGEERETIED 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
           ++EPY+IQQGFIQRTPRGR+    A++H  
Sbjct: 301 VLEPYLIQQGFIQRTPRGRVATNHAYRHFN 330


>gi|291617753|ref|YP_003520495.1| RuvB [Pantoea ananatis LMG 20103]
 gi|291152783|gb|ADD77367.1| RuvB [Pantoea ananatis LMG 20103]
          Length = 334

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 190/330 (57%), Positives = 253/330 (76%), Gaps = 1/330 (0%)

Query: 1   MMDREGLLSR-NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S  ++++E+     +RP+ L E+ GQ +    +++FI+AA+ R +ALDH+L 
Sbjct: 1   MIEADRLISAASINEEEGLDRAIRPKMLTEYVGQPQVREQMEIFIKAAQLRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY+++DL+ IV R A   GLA+++EAA EIA RSRGTPRIA RLLRRVRDFAEV    
Sbjct: 181 LEFYQVKDLQHIVGRSAACLGLALSEEAALEIARRSRGTPRIANRLLRRVRDFAEVRANG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            ++ +++  AL  L +D  GFD +D + L  I   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 VLSGDVSVTALDMLNVDSEGFDYMDRKLLLAIIDKFTGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           IEP++IQQGFIQRTPRGR+    A++H GI
Sbjct: 301 IEPFLIQQGFIQRTPRGRMATQHAYRHFGI 330


>gi|222109716|ref|YP_002551980.1| holliday junction DNA helicase ruvb [Acidovorax ebreus TPSY]
 gi|221729160|gb|ACM31980.1| Holliday junction DNA helicase RuvB [Acidovorax ebreus TPSY]
          Length = 356

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 192/320 (60%), Positives = 238/320 (74%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           SQE+A    LRP+ L+E+ GQ +A   L++FI AAK R EALDHVL  GPPGLGKTTL+ 
Sbjct: 27  SQEEALERALRPKLLQEYVGQAKAREQLEIFIGAAKKRGEALDHVLLFGPPGLGKTTLSH 86

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++A ELGVN R TSGPV+ K  DLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+
Sbjct: 87  IIATELGVNLRQTSGPVLEKPKDLAALLTNLERNDVLFIDEIHRLSPVVEEILYPALEDY 146

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           Q+D+M+GEGP+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  E+L  IV
Sbjct: 147 QIDIMIGEGPAARSIKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTPEELARIV 206

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R A L G  +  E   EIA RSRGTPRIA RLLRRVRD+AEV  +  IT +IA+ AL  
Sbjct: 207 MRSAGLLGAPIDAEGGMEIARRSRGTPRIANRLLRRVRDYAEVKGSGHITLDIANRALTM 266

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D  GFD +D + L  +   F GGPVG++ I+A + E    IED+IEPY+IQQG++QR
Sbjct: 267 LDVDPQGFDVMDRKLLEAVVHRFDGGPVGLDNIAASIGEESGTIEDVIEPYLIQQGYLQR 326

Query: 313 TPRGRLLMPIAWQHLGIDIP 332
           TPRGR+    A++HLG+  P
Sbjct: 327 TPRGRVATLAAYRHLGVAPP 346


>gi|269963131|ref|ZP_06177466.1| Holliday junction DNA helicase RuvB [Vibrio harveyi 1DA3]
 gi|269832095|gb|EEZ86219.1| Holliday junction DNA helicase RuvB [Vibrio harveyi 1DA3]
          Length = 334

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 189/322 (58%), Positives = 243/322 (75%), Gaps = 2/322 (0%)

Query: 11  NVSQEDADI--SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           N S  D D+    +RP+ L ++ GQ      +++FI+AA+ R EALDH+L  GPPGLGKT
Sbjct: 12  NPSFRDEDVIDRAIRPKKLADYQGQDHVRDQMEIFIKAAQLRNEALDHLLIFGPPGLGKT 71

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           TLA +VA E+ VN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS +VEE+LYPA
Sbjct: 72  TLANIVANEMEVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPA 131

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           MED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  RL +Y+++DL
Sbjct: 132 MEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGITQRLEYYKVKDL 191

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           + IVQR A   GL++  E A E+A R+RGTPRIA RLLRRVRD+AEV     I  E+AD 
Sbjct: 192 QDIVQRSADCLGLSMEAEGALEVARRARGTPRIANRLLRRVRDYAEVKGNGHICAEVADK 251

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL  L +D  GFD +D + L  I   FGGGPVG++ ++A + E +D IED++EPY+IQQG
Sbjct: 252 ALNMLDVDAKGFDYMDRKLLLAIMEKFGGGPVGLDNMAAAIGEEKDTIEDVLEPYLIQQG 311

Query: 309 FIQRTPRGRLLMPIAWQHLGID 330
           ++QRTPRGR+    A+ H GI+
Sbjct: 312 YLQRTPRGRIATDRAYLHFGIE 333


>gi|237748981|ref|ZP_04579461.1| holliday junction DNA helicase B [Oxalobacter formigenes OXCC13]
 gi|229380343|gb|EEO30434.1| holliday junction DNA helicase B [Oxalobacter formigenes OXCC13]
          Length = 355

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 188/319 (58%), Positives = 238/319 (74%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
            E+A    LRP+ L E+ GQ +    L++FI AAK R EALDH L  GPPGLGKTTLA +
Sbjct: 22  NEEAIERALRPKLLNEYVGQHKTREQLEIFIAAAKKRNEALDHTLLFGPPGLGKTTLAHI 81

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +ARE+GVN R TSGPV+ +AGDLAA+LTNLE  DVLFIDEIHR+S +VEEILYPA+ED+Q
Sbjct: 82  IAREMGVNLRQTSGPVLERAGDLAAILTNLEANDVLFIDEIHRMSPVVEEILYPALEDYQ 141

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           +D+++GEGP+ARSVK++L  FTLI ATTR G+LTNPL+DRFG+  RL FY+I+DL  IV 
Sbjct: 142 IDILIGEGPAARSVKLDLQPFTLIGATTRAGMLTNPLRDRFGVVARLEFYDIDDLTRIVT 201

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A L    + +E A EIA R+RGTPRIA RLLRRVRD+AEV     IT ++ADAAL  L
Sbjct: 202 RSAMLLKAPIVEEGAREIARRARGTPRIANRLLRRVRDYAEVKGTGKITHDMADAALKML 261

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D +GFD +D + L  +   F GGPVGI  ++A + E  D IED++EPY+IQQG++QRT
Sbjct: 262 DVDPVGFDLMDRKLLEAVLFKFSGGPVGIANLAAAIGEEVDTIEDVLEPYLIQQGYLQRT 321

Query: 314 PRGRLLMPIAWQHLGIDIP 332
           PRGR+     ++H GI  P
Sbjct: 322 PRGRIATTATYRHFGIAAP 340


>gi|269797655|ref|YP_003311555.1| Holliday junction DNA helicase RuvB [Veillonella parvula DSM 2008]
 gi|269094284|gb|ACZ24275.1| Holliday junction DNA helicase RuvB [Veillonella parvula DSM 2008]
          Length = 334

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 191/323 (59%), Positives = 241/323 (74%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L+     +ED     LRP+   E+ GQ EA  NL V+I+AAK R EALDHVL  GPPGLG
Sbjct: 7   LVGNGEHEEDIWQYSLRPKFFNEYVGQEEAKGNLNVYIQAAKQRGEALDHVLLYGPPGLG 66

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTTLA ++A ELGVNFR TSGP I K+GDLAA+LTNL+D DVLFIDEIHRLS  VEE+LY
Sbjct: 67  KTTLAGIIANELGVNFRITSGPAIEKSGDLAAILTNLDDHDVLFIDEIHRLSRSVEEVLY 126

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            AMED+ +D+++G+GPSAR+V+I+L +FTL+ ATTR G L  PL+DRFGI  RL +Y+  
Sbjct: 127 SAMEDYAIDIIIGKGPSARTVRIDLPKFTLVGATTRAGALAAPLRDRFGIINRLEYYKQP 186

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +L+ IV R A++  + +    A EIA RSRGTPRIA RLL+RVRDFA+V     IT+EIA
Sbjct: 187 ELEFIVSRAAEILNIGIVPTGASEIARRSRGTPRIANRLLKRVRDFAQVIGDGVITQEIA 246

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           D AL RL +DKMG D++D R L  I   + GGPVGI+TI+A +SE RD IED+ EPY++Q
Sbjct: 247 DEALQRLYVDKMGLDRIDRRVLECIIEKYDGGPVGIDTIAAAISEERDTIEDVYEPYLMQ 306

Query: 307 QGFIQRTPRGRLLMPIAWQHLGI 329
            GF+ RTPRGR+   +A++HLGI
Sbjct: 307 LGFLGRTPRGRVATKLAYEHLGI 329


>gi|332534226|ref|ZP_08410071.1| holliday junction DNA helicase RuvB [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332036306|gb|EGI72777.1| holliday junction DNA helicase RuvB [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 335

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 187/317 (58%), Positives = 238/317 (75%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           + ED+    +RP+ L ++ GQ      +++FIEAA+ R EALDH+L  GPPGLGKTTLA 
Sbjct: 14  TNEDSIDRAIRPKLLADYRGQPHVKQQMEIFIEAARTRGEALDHLLIFGPPGLGKTTLAN 73

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           +VA EL V+ ++TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS  VEEILYPAMED+
Sbjct: 74  IVANELHVSIKTTSGPVLEKAGDLAALLTNLEEGDVLFIDEIHRLSPQVEEILYPAMEDY 133

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  RL FY +EDL  IV
Sbjct: 134 QLDIMIGEGPAARSIKLDLPAFTLIGATTRAGSLTSPLRDRFGIVQRLEFYSVEDLSHIV 193

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R A   GL + D+ A EIA RSRGTPRIA RLLRRVRD+ +V    T+  ++A  AL  
Sbjct: 194 GRSAHYLGLEMCDDGATEIAQRSRGTPRIANRLLRRVRDYTQVKSDGTVNADVAKQALDM 253

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           + +DK GFD +D +YL  I   F GGPVG++ ++A + E R+ IED+IEP++IQQGFIQR
Sbjct: 254 IDVDKSGFDYMDRKYLLAIIEKFMGGPVGLDNVAAAIGEERETIEDVIEPFLIQQGFIQR 313

Query: 313 TPRGRLLMPIAWQHLGI 329
           TPRGR++   A+ H G+
Sbjct: 314 TPRGRIVSDSAYHHFGL 330


>gi|163802050|ref|ZP_02195946.1| Holliday junction DNA helicase B [Vibrio sp. AND4]
 gi|159174191|gb|EDP58999.1| Holliday junction DNA helicase B [Vibrio sp. AND4]
          Length = 334

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 189/322 (58%), Positives = 242/322 (75%), Gaps = 2/322 (0%)

Query: 11  NVSQEDADI--SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           N S  D D+    +RP+ L ++ GQ      +++FI+AA+ R EALDH+L  GPPGLGKT
Sbjct: 12  NPSFRDEDVIDRAIRPKKLADYQGQDHVRDQMEIFIKAAQQRNEALDHLLIFGPPGLGKT 71

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           TLA +VA E+ VN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS +VEE+LYPA
Sbjct: 72  TLANIVANEMEVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPA 131

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           MED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  RL +Y+++DL
Sbjct: 132 MEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGITQRLEYYKVQDL 191

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           K IVQR A   GL++  E A E+A R+RGTPRIA RLLRRVRD+AEV     I  + AD 
Sbjct: 192 KDIVQRSADCLGLSMEPEGALEVARRARGTPRIANRLLRRVRDYAEVKGNGHICADTADK 251

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL  L +D  GFD +D + L  I   FGGGPVG++ ++A + E +D IED++EPY+IQQG
Sbjct: 252 ALNMLDVDAKGFDYMDRKLLLAIMEKFGGGPVGLDNMAAAIGEEKDTIEDVLEPYLIQQG 311

Query: 309 FIQRTPRGRLLMPIAWQHLGID 330
           ++QRTPRGR+    A+ H GI+
Sbjct: 312 YLQRTPRGRIATDRAYLHFGIE 333


>gi|54308310|ref|YP_129330.1| Holliday junction DNA helicase RuvB [Photobacterium profundum SS9]
 gi|62288987|sp|Q6LT48|RUVB_PHOPR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|46912738|emb|CAG19528.1| putative holliday junction DNA helicase RuvB [Photobacterium
           profundum SS9]
          Length = 337

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 190/335 (56%), Positives = 248/335 (74%), Gaps = 2/335 (0%)

Query: 1   MMDREGLLSRNVSQEDADI--SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M++ + L+S +    D ++    +RP+ L ++ GQ      +++FI+AA+ R EALDH+L
Sbjct: 1   MIEADRLISNSFESRDDEVIDRAIRPKLLNDYQGQDHVRGQMEIFIKAAQLREEALDHLL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA +VA E+GV+ R+TSGPV+ KAGDLAALLTNLE  DVLFIDEIHRLS
Sbjct: 61  IFGPPGLGKTTLANIVANEMGVSIRTTSGPVLEKAGDLAALLTNLEPNDVLFIDEIHRLS 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
             VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  
Sbjct: 121 PHVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGITQ 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           RL +Y+++DLK IVQR A   GL++ +E A E+A R+RGTPRIA RLLRRVRD+AEV   
Sbjct: 181 RLEYYKVDDLKDIVQRSANCLGLSMEEEGALEMAQRARGTPRIANRLLRRVRDYAEVVGN 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             I  + A  AL  L +D  GFD +D + L  I   F GGPVG++ ++A + E +D IED
Sbjct: 241 GIICSDTAKKALDMLDVDSSGFDYMDRKLLLAIIDKFMGGPVGLDNLAAAIGEEKDTIED 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           ++EPY+IQQGF+QRTPRGR+    A+ H G+DIP 
Sbjct: 301 VLEPYLIQQGFLQRTPRGRIATHRAYLHFGLDIPE 335


>gi|28897826|ref|NP_797431.1| Holliday junction DNA helicase RuvB [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153839743|ref|ZP_01992410.1| holliday junction DNA helicase RuvB [Vibrio parahaemolyticus
           AQ3810]
 gi|260361756|ref|ZP_05774781.1| holliday junction DNA helicase RuvB [Vibrio parahaemolyticus K5030]
 gi|260876985|ref|ZP_05889340.1| holliday junction DNA helicase RuvB [Vibrio parahaemolyticus
           AN-5034]
 gi|31076901|sp|Q87QU7|RUVB_VIBPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|28806039|dbj|BAC59315.1| holliday junction DNA helicase RuvB [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149746741|gb|EDM57729.1| holliday junction DNA helicase RuvB [Vibrio parahaemolyticus
           AQ3810]
 gi|308093890|gb|EFO43585.1| holliday junction DNA helicase RuvB [Vibrio parahaemolyticus
           AN-5034]
 gi|308113263|gb|EFO50803.1| holliday junction DNA helicase RuvB [Vibrio parahaemolyticus K5030]
          Length = 334

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 186/316 (58%), Positives = 241/316 (76%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           ED     +RP+ L ++ GQ      +++FI+AA+ R+EALDH+L  GPPGLGKTTLA +V
Sbjct: 18  EDVIDRAIRPKKLADYQGQDHVRDQMEIFIKAAQLRSEALDHLLIFGPPGLGKTTLANIV 77

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A E+ VN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS +VEE+LYPAMED+QL
Sbjct: 78  ANEMEVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQL 137

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  RL +Y+++DL+ IVQR
Sbjct: 138 DIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGITQRLEYYKVQDLQNIVQR 197

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A   GL++  E A E+A R+RGTPRIA RLLRRVRD+AEV     I  ++AD AL  L 
Sbjct: 198 SADCLGLSMEPEGALEVARRARGTPRIANRLLRRVRDYAEVKGNGHICADVADKALNMLD 257

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D  GFD +D + L  I   FGGGPVG++ ++A + E +D IED++EPY+IQQG++QRTP
Sbjct: 258 VDAQGFDYMDRKLLLAIMEKFGGGPVGLDNMAAAIGEEKDTIEDVLEPYLIQQGYLQRTP 317

Query: 315 RGRLLMPIAWQHLGID 330
           RGR+    A+ H GI+
Sbjct: 318 RGRIATDRAYLHFGIE 333


>gi|304407533|ref|ZP_07389185.1| Holliday junction DNA helicase RuvB [Paenibacillus curdlanolyticus
           YK9]
 gi|304343484|gb|EFM09326.1| Holliday junction DNA helicase RuvB [Paenibacillus curdlanolyticus
           YK9]
          Length = 336

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 193/332 (58%), Positives = 248/332 (74%), Gaps = 1/332 (0%)

Query: 2   MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M+ E ++S N+  ED  + L LRPR L E+ GQ     NLKVFIEAAK R EALDHVL  
Sbjct: 1   MEDERIISANLMMEDQAVELSLRPRYLAEYIGQSNVKENLKVFIEAAKLRKEALDHVLLY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTL+ ++A ELGV+ R+TSGP I + GDLAALLTNL++ DVLFIDEIHRL+  
Sbjct: 61  GPPGLGKTTLSNIIANELGVSLRTTSGPAIERPGDLAALLTNLQEGDVLFIDEIHRLNRS 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDF LD+M+G+GPSARSV+++L  FTLI ATTR GLL+ PL+DRFG+  RL
Sbjct: 121 VEEVLYPAMEDFALDIMIGKGPSARSVRLDLPPFTLIGATTRAGLLSAPLRDRFGVVSRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y+ ++L  IV R + + G+++  EAA EIA+RSRGTPRIA RLL+RVRDFA+V     
Sbjct: 181 EYYKTDELAFIVSRASDILGVSIVGEAATEIALRSRGTPRIANRLLKRVRDFAQVRGDGI 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           IT E+A  AL  L +D MG D +D + L  +  +F GGPVG++TI+A + E    IED+ 
Sbjct: 241 ITHELARYALELLRVDPMGLDAIDHKMLRAMIESFRGGPVGLDTIAATIGEESQTIEDVY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EPY++Q G +QRTPRGR+  P A++HLGI +P
Sbjct: 301 EPYLMQVGLLQRTPRGRIATPQAYRHLGIPVP 332


>gi|301155729|emb|CBW15197.1| ATP-dependent DNA helicase, component of RuvABC resolvasome
           [Haemophilus parainfluenzae T3T1]
          Length = 322

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 187/318 (58%), Positives = 239/318 (75%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           ED     +RP+ L ++ GQ +    + +FI+AAK R +ALDH+L  GPPGLGKTTLA +V
Sbjct: 3   EDVIDRAIRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIV 62

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS  +EE+LYPAMED+QL
Sbjct: 63  ANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQL 122

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  RL FY +EDL +IV R
Sbjct: 123 DIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVTR 182

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A    L + D+AA E+A RSRGTPRIA RLLRRVRDFA+V +   I+ +IA  AL  L 
Sbjct: 183 SASCLNLELEDKAAFEVARRSRGTPRIANRLLRRVRDFADVRNDGIISADIAKQALSMLD 242

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D  GFD LD + LT +   F GGPVG++ ++A + E RD IED++EPY+IQQGF+QRTP
Sbjct: 243 VDDAGFDYLDRKLLTAVIERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTP 302

Query: 315 RGRLLMPIAWQHLGIDIP 332
           RGR+   + ++H G+  P
Sbjct: 303 RGRIATSLTYRHFGLQKP 320


>gi|330872652|gb|EGH06801.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330964825|gb|EGH65085.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 353

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 195/337 (57%), Positives = 250/337 (74%), Gaps = 4/337 (1%)

Query: 1   MMDREGLLSRNVSQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M+D + L++  V   D D  L   +RP +L ++ GQ      +++FI+AA+ R EALDH 
Sbjct: 1   MIDADRLIT-AVGGRDRDEQLDRAIRPLSLADYIGQPTVREQMELFIQAARGRNEALDHT 59

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTLA ++A+E+GV+ +STSGPV+ + GDLAA+LTNLE  DVLFIDEIHRL
Sbjct: 60  LIFGPPGLGKTTLANIIAQEMGVSIKSTSGPVLERPGDLAAILTNLEPNDVLFIDEIHRL 119

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           S IVEE+LYPAMEDFQLD+M+GEGP+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI 
Sbjct: 120 SPIVEEVLYPAMEDFQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIV 179

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            RL FY I DL TIV R A + GL +  E A EIA R+RGTPRIA RLLRRVRDFA+V  
Sbjct: 180 QRLEFYNIADLSTIVARSAGILGLVIEPEGAFEIARRARGTPRIANRLLRRVRDFAQVRG 239

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
              ITR+ AD AL  L +D+ GFD  D R L  +   F GGPVG+++++A +SE R  IE
Sbjct: 240 NGQITRQTADKALNLLDVDEHGFDHQDRRLLLTMIEKFDGGPVGVDSLAAAISEERHTIE 299

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           D++EPY+IQQG+I RTPRGR++   A+ H G++IP R
Sbjct: 300 DVLEPYLIQQGYIMRTPRGRVVTRHAYLHFGLNIPAR 336


>gi|91227613|ref|ZP_01261917.1| Holliday junction DNA helicase B [Vibrio alginolyticus 12G01]
 gi|91188506|gb|EAS74799.1| Holliday junction DNA helicase B [Vibrio alginolyticus 12G01]
          Length = 334

 Score =  385 bits (989), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 188/316 (59%), Positives = 241/316 (76%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           ED     +RP+ L ++ GQ      +++FI+AA+ R+EALDH+L  GPPGLGKTTLA +V
Sbjct: 18  EDVIDRAIRPKKLADYQGQDHVRDQMEIFIKAAQLRSEALDHLLIFGPPGLGKTTLANIV 77

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A E+ VN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS +VEE+LYPAMED+QL
Sbjct: 78  ANEMEVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQL 137

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  RL FY+I+DL+ IVQR
Sbjct: 138 DIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGITQRLEFYKIKDLQDIVQR 197

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A   GL++  E A E+A R+RGTPRIA RLLRRVRD+AEV     I  ++AD AL  L 
Sbjct: 198 SADCLGLSMEPEGALEVARRARGTPRIANRLLRRVRDYAEVKGNGHICADVADKALNMLD 257

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D  GFD +D + L  I   FGGGPVG++ ++A + E +D IED++EPY+IQQG++QRTP
Sbjct: 258 VDAEGFDYMDRKLLLAIMEKFGGGPVGLDNMAAAIGEEKDTIEDVLEPYLIQQGYLQRTP 317

Query: 315 RGRLLMPIAWQHLGID 330
           RGR+    A+ H GI+
Sbjct: 318 RGRIATDRAYLHFGIE 333


>gi|308187171|ref|YP_003931302.1| Holliday junction ATP-dependent DNA helicase ruvB [Pantoea vagans
           C9-1]
 gi|308057681|gb|ADO09853.1| Holliday junction ATP-dependent DNA helicase ruvB [Pantoea vagans
           C9-1]
          Length = 334

 Score =  385 bits (989), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 188/319 (58%), Positives = 246/319 (77%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           ++++E+     +RP+ L E+ GQ +    +++FI+AA+ R +ALDH+L  GPPGLGKTTL
Sbjct: 12  SINEEEIIDRAIRPKMLTEYVGQPQVREQMEIFIKAAQLRGDALDHLLIFGPPGLGKTTL 71

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           A +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS +VEE+LYPAME
Sbjct: 72  ANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAME 131

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           D+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  RL FY+++DL+ 
Sbjct: 132 DYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVKDLQH 191

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           IV R A   GLA++DE A EIA R+RGTPRIA RLLRRVRDFAEV     ++ E++ +AL
Sbjct: 192 IVGRSAACLGLALSDEGALEIARRARGTPRIANRLLRRVRDFAEVRANGDMSGEVSCSAL 251

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
             L +D  GFD +D + L  I   F GGPVG++ ++A + E R+ IED+IEP++IQQGFI
Sbjct: 252 DMLNVDSEGFDYMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETIEDVIEPFLIQQGFI 311

Query: 311 QRTPRGRLLMPIAWQHLGI 329
           QRTPRGRL    A++H GI
Sbjct: 312 QRTPRGRLATQHAYRHFGI 330


>gi|254787340|ref|YP_003074769.1| Holliday junction DNA helicase RuvB [Teredinibacter turnerae T7901]
 gi|259495679|sp|C5BQT4|RUVB_TERTT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|237683928|gb|ACR11192.1| Holliday junction DNA helicase RuvB [Teredinibacter turnerae T7901]
          Length = 347

 Score =  385 bits (989), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 191/333 (57%), Positives = 250/333 (75%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M+D++ ++  + S +ED     +RP+ L E+ GQ      +++FI AA+ R EALDH L 
Sbjct: 1   MIDQDRIVDGHASGREDQLDRAVRPKRLAEYIGQPAVREQMEIFIGAARLREEALDHTLV 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A E+G + ++TSGPV+ KAGDLAAL+TNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIIATEMGGDLKTTSGPVLDKAGDLAALMTNLEAGDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPAMEDFQLD+M+G+GP+ARS+K++L  FTL+ ATTR GLLT+PL+DRFGI  R
Sbjct: 121 VVEEILYPAMEDFQLDIMIGDGPAARSIKLDLPPFTLVGATTRAGLLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY ++DL  IV+R A+L+G+A+ +    EIA R+RGTPRIA RLLRRVRD+AEV    
Sbjct: 181 LEFYSVQDLTHIVKRSAQLSGVAMEEAGGMEIARRARGTPRIANRLLRRVRDYAEVKGDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT  IAD+AL  L +D  GFD +D R L  +   FGGGPVG+++++A +SE RD IED+
Sbjct: 241 VITAAIADSALNMLNVDHHGFDHMDRRLLLALIEKFGGGPVGVDSLAAAISEERDTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           +EPY+IQQGF+ RTPRGR+    A+ H GI  P
Sbjct: 301 LEPYLIQQGFLVRTPRGRMATQNAYNHFGILAP 333


>gi|145297805|ref|YP_001140646.1| Holliday junction DNA helicase RuvB [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|166231460|sp|A4SJ26|RUVB_AERS4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|142850577|gb|ABO88898.1| holliday junction DNA helicase RuvB [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 336

 Score =  385 bits (989), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 191/333 (57%), Positives = 247/333 (74%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S    +ED  I   +RP+ L ++TGQ   C  +++FIEAA+ R EALDH+L 
Sbjct: 1   MIEADRLISATGVREDEIIDRAIRPKMLADYTGQDPVCEQMEIFIEAARQRGEALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN ++TSGPV+ KAGDLAALLTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNIKTTSGPVLEKAGDLAALLTNLEPNDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY ++DL  IV R A+  GL +T + A E+A RSRGTPRIA RLLRRVRDFA+V    
Sbjct: 181 LEFYNVKDLTDIVSRSARCLGLEMTGDGALELARRSRGTPRIANRLLRRVRDFAQVKSDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I   IA  A+  L +D  GFD +D + L  +   F GGPVG++ ++A + E +D IED+
Sbjct: 241 RIDGPIAARAMDMLDVDNEGFDFMDRKLLLAVIDKFMGGPVGLDNLAAAIGEEKDTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           +EPY+IQQG++QRTPRGR+  P A+ H G+  P
Sbjct: 301 LEPYLIQQGYLQRTPRGRMATPRAYAHFGLQRP 333


>gi|257454448|ref|ZP_05619710.1| holliday junction DNA helicase RuvB [Enhydrobacter aerosaccus SK60]
 gi|257448214|gb|EEV23195.1| holliday junction DNA helicase RuvB [Enhydrobacter aerosaccus SK60]
          Length = 327

 Score =  385 bits (989), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 194/313 (61%), Positives = 237/313 (75%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L+S     ED + + +RP  L E+ GQ      + VFI AA +R EALDH L  GPPGLG
Sbjct: 14  LISPMGRSEDQNDNNIRPALLAEYIGQPVVKEQMGVFINAALSRKEALDHTLIFGPPGLG 73

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTTLA ++ARE+G N RSTSGPV+ +AGDLAA+LTNLE  DVLFIDEIHRLS ++EEILY
Sbjct: 74  KTTLANIIAREMGGNLRSTSGPVLERAGDLAAMLTNLEPGDVLFIDEIHRLSPMIEEILY 133

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           PAMEDFQLD+M+GEGP+ARS+K++L  FTL+AATTR GLLT+PL+DRFGI  RL FY + 
Sbjct: 134 PAMEDFQLDIMIGEGPAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRLEFYNVA 193

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           DL TIV R A L  + +T E A E+A RSRGTPRIA RLLRRVRD+A+V    T+T EIA
Sbjct: 194 DLTTIVTRSAGLLNVPMTKEGAVEVARRSRGTPRIANRLLRRVRDYAQVKGDGTVTAEIA 253

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
            +AL  LA+DK G D LD RYL M+   F GGP G+E+I+A L+E R  +ED+IEPY+IQ
Sbjct: 254 HSALDMLAVDKRGLDNLDRRYLEMLEERFNGGPAGVESIAAALAEDRGTLEDVIEPYLIQ 313

Query: 307 QGFIQRTPRGRLL 319
           QG+I RT RGR+L
Sbjct: 314 QGYIVRTARGRML 326


>gi|254516708|ref|ZP_05128767.1| Holliday junction DNA helicase RuvB [gamma proteobacterium NOR5-3]
 gi|219675131|gb|EED31498.1| Holliday junction DNA helicase RuvB [gamma proteobacterium NOR5-3]
          Length = 356

 Score =  385 bits (989), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 186/322 (57%), Positives = 245/322 (76%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
             + EDA    +RP++L E+ GQ  A   +++F+ AAK R E LDH L  GPPGLGKTTL
Sbjct: 13  TTANEDALDRAVRPKSLAEYIGQPVAREQMEIFLAAAKGREEPLDHTLIFGPPGLGKTTL 72

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           A ++A E+GV+ ++TSGPV+ KAGD+AAL+TNLE  DVLFIDEIHRLS  VEEILYPAME
Sbjct: 73  ASIIANEMGVSLKTTSGPVLEKAGDIAALMTNLEPGDVLFIDEIHRLSPFVEEILYPAME 132

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           D+QLD+M+GEGP+ARS+K++L  FTL+ ATTR GLLT+PL+DRFGI  RL FY ++DL  
Sbjct: 133 DYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGLLTSPLRDRFGIVQRLEFYAVDDLAV 192

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           IV R A++ G+ + +  A EIA R+RGTPRIA RLLRRVRD+AEV    T+ R+IAD AL
Sbjct: 193 IVARSARILGIPMDEAGAREIARRARGTPRIANRLLRRVRDYAEVKGDGTVNRDIADRAL 252

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
             L++D  GFD LD R L  +   F GGPVG+++++A LSE R  IED++EP++IQQG++
Sbjct: 253 DLLSVDAKGFDHLDRRLLLAMIEKFDGGPVGVDSLAAALSEERGTIEDVLEPFLIQQGYM 312

Query: 311 QRTPRGRLLMPIAWQHLGIDIP 332
            RTPRGR++  +A+QH G+ +P
Sbjct: 313 IRTPRGRMVTRLAYQHFGVPMP 334


>gi|271500731|ref|YP_003333756.1| Holliday junction DNA helicase RuvB [Dickeya dadantii Ech586]
 gi|270344286|gb|ACZ77051.1| Holliday junction DNA helicase RuvB [Dickeya dadantii Ech586]
          Length = 336

 Score =  385 bits (989), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 187/312 (59%), Positives = 239/312 (76%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L E+ GQ      +++FIEAA+ R +ALDH+L  GPPGLGKTTLA +VA E+GVN
Sbjct: 23  IRPKLLSEYVGQPVVREQMEIFIEAARKRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R+TSGPV+ KAGDLAALLTNLE  DVLFIDEIHRLS +VEE+LYPAMED+QLD+M+GEG
Sbjct: 83  LRTTSGPVLEKAGDLAALLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEG 142

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  RL FY++ DL+ IVQR A+  GL
Sbjct: 143 PAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVADLQHIVQRSAQCLGL 202

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T + A EIA RSRGTPRIA RLLRRVRDF+EV     I+ ++A  AL  LA+D  GFD
Sbjct: 203 DMTGDGALEIARRSRGTPRIANRLLRRVRDFSEVKSDGAISADVAVQALDMLAVDSEGFD 262

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   F GGPVG++ ++A + E R+ IED++EPY+IQQGF+QRTPRGR+   
Sbjct: 263 YMDRKLLLAVIDKFMGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRIATQ 322

Query: 322 IAWQHLGIDIPH 333
            A++H G+   H
Sbjct: 323 HAYRHFGLTREH 334


>gi|146283143|ref|YP_001173296.1| Holliday junction DNA helicase RuvB [Pseudomonas stutzeri A1501]
 gi|166231542|sp|A4VNA3|RUVB_PSEU5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|145571348|gb|ABP80454.1| Holliday junction DNA helicase RuvB [Pseudomonas stutzeri A1501]
 gi|327481496|gb|AEA84806.1| Holliday junction DNA helicase RuvB [Pseudomonas stutzeri DSM 4166]
          Length = 350

 Score =  385 bits (989), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 195/327 (59%), Positives = 240/327 (73%), Gaps = 3/327 (0%)

Query: 11  NVSQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
             S  D D  L   +RP  L E+ GQ      + +FI AAK R EALDH L  GPPGLGK
Sbjct: 9   TASSRDRDEQLDRAIRPLKLAEYIGQPVVREQMDLFIRAAKGRQEALDHTLIFGPPGLGK 68

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127
           TTLA ++A E+GV+ +STSGPV+ + GDLAALLTNLE  DVLF+DEIHRLS IVEE+LYP
Sbjct: 69  TTLANIIAEEMGVSIKSTSGPVLERPGDLAALLTNLEAGDVLFVDEIHRLSPIVEEVLYP 128

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           AMEDFQLD+M+GEGP+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  ED
Sbjct: 129 AMEDFQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQRLEFYSTED 188

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           L TIV+R A + GL    E A EIA R+RGTPRIA RLLRRVRDFA+V     ITR+IAD
Sbjct: 189 LATIVRRSAGILGLPTEPEGAFEIARRARGTPRIANRLLRRVRDFAQVRGKGEITRQIAD 248

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
            AL  L +D+ GFD  D R L  +   F GGPVGI++++A +SE R  IED++EPY+IQQ
Sbjct: 249 LALNMLDVDERGFDHQDRRLLLTLIEKFDGGPVGIDSLAAAISEERHTIEDVLEPYLIQQ 308

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           G+I RTPRGR++   A+ H G+++P R
Sbjct: 309 GYIMRTPRGRVVTRHAYLHFGLNLPKR 335


>gi|227329528|ref|ZP_03833552.1| Holliday junction DNA helicase RuvB [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 336

 Score =  385 bits (989), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 190/330 (57%), Positives = 250/330 (75%), Gaps = 1/330 (0%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S +   E+  I   +RP+ L E+ GQ +    +++FI+AA+ R +ALDH+L 
Sbjct: 1   MIEADRLISADAVPEEEFIDRAIRPKLLTEYVGQPQVREQMEIFIQAARKRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAALLTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNMRTTSGPVLEKAGDLAALLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++EDL+ IV R A+  GL +T + A E+A R+RGTPRIA RLLRRVRDF+EV    
Sbjct: 181 LEFYKVEDLQYIVSRSAQCLGLDLTSDGALEVARRARGTPRIANRLLRRVRDFSEVKSEG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT ++A  AL  LA+D  GFD +D + L  I   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 AITGDVATQALDMLAVDTEGFDYMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           +EP++IQQGFIQRTPRGR+    A++H G+
Sbjct: 301 LEPFLIQQGFIQRTPRGRMATQHAYRHFGL 330


>gi|269967686|ref|ZP_06181736.1| Holliday junction DNA helicase RuvB [Vibrio alginolyticus 40B]
 gi|269827773|gb|EEZ82057.1| Holliday junction DNA helicase RuvB [Vibrio alginolyticus 40B]
          Length = 359

 Score =  385 bits (989), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 188/315 (59%), Positives = 240/315 (76%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           ED     +RP+ L ++ GQ      +++FI+AA+ R+EALDH+L  GPPGLGKTTLA +V
Sbjct: 45  EDVIDRAIRPKKLADYQGQDHVRDQMEIFIKAAQLRSEALDHLLIFGPPGLGKTTLANIV 104

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A E+ VN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS +VEE+LYPAMED+QL
Sbjct: 105 ANEMEVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQL 164

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  RL FY+I+DL+ IVQR
Sbjct: 165 DIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGITQRLEFYKIKDLQDIVQR 224

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A   GL++  E A E+A R+RGTPRIA RLLRRVRD+AEV     I  ++AD AL  L 
Sbjct: 225 SADCLGLSMEPEGALEVARRARGTPRIANRLLRRVRDYAEVKGNGHICADVADKALNMLD 284

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D  GFD +D + L  I   FGGGPVG++ ++A + E +D IED++EPY+IQQG++QRTP
Sbjct: 285 VDAEGFDYMDRKLLLAIMEKFGGGPVGLDNMAAAIGEEKDTIEDVLEPYLIQQGYLQRTP 344

Query: 315 RGRLLMPIAWQHLGI 329
           RGR+    A+ H GI
Sbjct: 345 RGRIATDRAYLHFGI 359


>gi|58581286|ref|YP_200302.1| Holliday junction DNA helicase RuvB [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84623204|ref|YP_450576.1| Holliday junction DNA helicase B [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|166712988|ref|ZP_02244195.1| Holliday junction DNA helicase B [Xanthomonas oryzae pv. oryzicola
           BLS256]
 gi|188577433|ref|YP_001914362.1| Holliday junction DNA helicase RuvB [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|289661902|ref|ZP_06483483.1| Holliday junction DNA helicase RuvB [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|289666993|ref|ZP_06488068.1| Holliday junction DNA helicase RuvB [Xanthomonas campestris pv.
           musacearum NCPPB4381]
 gi|81311909|sp|Q5H2A4|RUVB_XANOR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|97190463|sp|Q2P575|RUVB_XANOM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|238689461|sp|B2STK0|RUVB_XANOP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|58425880|gb|AAW74917.1| holliday junction binding protein DNA helicase [Xanthomonas oryzae
           pv. oryzae KACC10331]
 gi|84367144|dbj|BAE68302.1| holliday junction binding protein DNA helicase [Xanthomonas oryzae
           pv. oryzae MAFF 311018]
 gi|188521885|gb|ACD59830.1| holliday junction DNA helicase RuvB [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 345

 Score =  385 bits (988), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 193/331 (58%), Positives = 247/331 (74%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD+  + S +  ++DA  + +RP+ L ++ GQ      ++++I+AAKAR EA+DHVL  G
Sbjct: 1   MDQRIIASSSTREDDAADASIRPKRLADYLGQQPVREQMEIYIQAAKARGEAMDHVLIFG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTL+ V+A ELGV+ R TSGPVI KAGDLAALLTNL+  DVLFIDEIHRLS +V
Sbjct: 61  PPGLGKTTLSHVIANELGVSLRVTSGPVIEKAGDLAALLTNLQPHDVLFIDEIHRLSPVV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMEDFQ+D+M+G+GP+ARS+KI+L  FTLI ATTR GLLT PL+DRFGI  RL 
Sbjct: 121 EEVLYPAMEDFQIDIMIGDGPAARSIKIDLPPFTLIGATTRAGLLTAPLRDRFGIVQRLE 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY  ++L  IV R A + G+  T E A EIA R+RGTPRIA RLLRRVRD+A+V  A  I
Sbjct: 181 FYSPQELTRIVIRSAAILGIDCTPEGAAEIARRARGTPRIANRLLRRVRDYAQVKAAGHI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
              +A AA+  L +D  GFD+LD R L  I  +F GGPVG+E+++A LSE R  +ED+IE
Sbjct: 241 DLPVAQAAMQMLKVDPEGFDELDRRMLRTIVEHFDGGPVGVESLAASLSEERGTLEDVIE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           PY+IQQGF+ RT RGR++   A+ HLG+  P
Sbjct: 301 PYLIQQGFLIRTARGRMVTTKAYLHLGLKPP 331


>gi|240112975|ref|ZP_04727465.1| Holliday junction DNA helicase RuvB [Neisseria gonorrhoeae MS11]
 gi|268599055|ref|ZP_06133222.1| holliday junction DNA helicase RuvB [Neisseria gonorrhoeae MS11]
 gi|268583186|gb|EEZ47862.1| holliday junction DNA helicase RuvB [Neisseria gonorrhoeae MS11]
          Length = 343

 Score =  385 bits (988), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 194/319 (60%), Positives = 244/319 (76%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           +QE+     LRP+TL+++ GQ +A   L +FI+AAK R EALDHVL  GPPGLGKTTLA 
Sbjct: 23  AQEELLERALRPKTLDDYIGQHKAKEQLAIFIQAAKKRGEALDHVLLFGPPGLGKTTLAH 82

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++A+ELGVN R TSGPV+ +AGDLAALLTNL+  DVLFIDEIHRLS +VEEILYPA+ED+
Sbjct: 83  IIAKELGVNLRQTSGPVLERAGDLAALLTNLDPHDVLFIDEIHRLSPVVEEILYPALEDY 142

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           +LD+M+GEGP+ARSVKI+L  FTL+ ATTR G+LTNPL+DRFGI  RL FYE  DL TIV
Sbjct: 143 RLDIMIGEGPAARSVKIDLPPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYENCDLTTIV 202

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R A+L  L + +E A E+A RSRGTPRIA RLLRRVRDFA+V +   I   +ADAAL  
Sbjct: 203 SRSAQLLQLDMGEEGAMEVAKRSRGTPRIANRLLRRVRDFADVKNNGVIDAAVADAALSM 262

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D  G D +D ++L  +   FGGGPVG++ ++A + E  D IED+IEPY+IQQGF+QR
Sbjct: 263 LDVDAQGLDVMDRKFLEAVLHKFGGGPVGLDNVAAAIGESTDTIEDVIEPYLIQQGFLQR 322

Query: 313 TPRGRLLMPIAWQHLGIDI 331
           TPRGR+    A+ H G+ +
Sbjct: 323 TPRGRMATERAYLHFGLPV 341


>gi|328473202|gb|EGF44050.1| Holliday junction DNA helicase RuvB [Vibrio parahaemolyticus 10329]
          Length = 334

 Score =  385 bits (988), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 186/316 (58%), Positives = 240/316 (75%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           ED     +RP+ L ++ GQ      +++FI+AA+ R+EALDH+L  GPPGLGKTTLA +V
Sbjct: 18  EDVIDRAIRPKKLADYQGQDHVRDQMEIFIKAAQLRSEALDHLLIFGPPGLGKTTLANIV 77

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A E+ VN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS +VEE+LYPAMED+QL
Sbjct: 78  ANEMEVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQL 137

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  RL +Y++ DL+ IVQR
Sbjct: 138 DIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGITQRLEYYKVHDLQNIVQR 197

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A   GL++  E A E+A R+RGTPRIA RLLRRVRD+AEV     I  ++AD AL  L 
Sbjct: 198 SADCLGLSMEPEGALEVARRARGTPRIANRLLRRVRDYAEVKGNGHICADVADKALNMLD 257

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D  GFD +D + L  I   FGGGPVG++ ++A + E +D IED++EPY+IQQG++QRTP
Sbjct: 258 VDAQGFDYMDRKLLLAIMEKFGGGPVGLDNMAAAIGEEKDTIEDVLEPYLIQQGYLQRTP 317

Query: 315 RGRLLMPIAWQHLGID 330
           RGR+    A+ H GI+
Sbjct: 318 RGRIATDRAYLHFGIE 333


>gi|293395810|ref|ZP_06640092.1| crossover junction endoribonuclease subunit B [Serratia odorifera
           DSM 4582]
 gi|291421747|gb|EFE94994.1| crossover junction endoribonuclease subunit B [Serratia odorifera
           DSM 4582]
          Length = 334

 Score =  385 bits (988), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 190/331 (57%), Positives = 250/331 (75%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSRN-VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S   +++E+     +RP+ L E+ GQ      +++FI+AAK R++ALDH+L 
Sbjct: 1   MIEADRLISAEPITEEEVIDRAIRPKLLTEYVGQPHVREQMEIFIQAAKQRSDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IV R A   GL+++ E + EIA R+RGTPRIA RLLRRVRDFAEV    
Sbjct: 181 LEFYQVADLEHIVSRSAHCLGLSLSTEGSHEIARRARGTPRIANRLLRRVRDFAEVRANG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I+ E+A  AL  L +D  GFD +D + L  I   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 QISGEVAAQALNMLNVDAEGFDYMDRKLLLAIIDKFTGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           IEP++IQQGFIQRTPRGR+    A++H GI+
Sbjct: 301 IEPFLIQQGFIQRTPRGRMATLHAYKHFGIE 331


>gi|312797267|ref|YP_004030189.1| Holliday junction DNA helicase ruvB [Burkholderia rhizoxinica HKI
           454]
 gi|312169042|emb|CBW76045.1| Holliday junction DNA helicase ruvB [Burkholderia rhizoxinica HKI
           454]
          Length = 367

 Score =  385 bits (988), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 195/311 (62%), Positives = 239/311 (76%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPR L+E+ GQ +    L++FIEAAK R+EALDHVL  GPPGLGKTTLA +VARE+GVN
Sbjct: 43  LRPRLLDEYVGQEKVRGQLEIFIEAAKRRSEALDHVLLFGPPGLGKTTLAHIVAREMGVN 102

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+Q+D+M+GEG
Sbjct: 103 LRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDYQIDIMIGEG 162

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY   +L  IV+R A L G 
Sbjct: 163 PAARSVKLDLHPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTAGELARIVERSAHLLGA 222

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  E A EIA RSRGTPRIA RLLRRVRD+AEV     IT   ADAAL  L +D +GFD
Sbjct: 223 QIESEGALEIARRSRGTPRIANRLLRRVRDYAEVKSDGRITATTADAALAMLDVDPVGFD 282

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  I   F GGPVG++ ++A + E RD IED+IEPY+IQQG++QRTPRGR+   
Sbjct: 283 LMDRKLLEAILHKFDGGPVGLDNLAAAIGEERDTIEDVIEPYLIQQGYLQRTPRGRVATL 342

Query: 322 IAWQHLGIDIP 332
           +A++H G+  P
Sbjct: 343 LAYRHFGLAAP 353


>gi|319943008|ref|ZP_08017291.1| crossover junction ATP-dependent DNA helicase RuvB [Lautropia
           mirabilis ATCC 51599]
 gi|319743550|gb|EFV95954.1| crossover junction ATP-dependent DNA helicase RuvB [Lautropia
           mirabilis ATCC 51599]
          Length = 353

 Score =  384 bits (987), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 186/319 (58%), Positives = 241/319 (75%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           QE+     LRPR L ++ GQ +    L +FIEA++ R EALDHVL  GPPGLGKTTLA +
Sbjct: 24  QEEQLEKALRPRRLADYVGQRKIRQQLDIFIEASRRRQEALDHVLLFGPPGLGKTTLAHI 83

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +A E+GVN + TSGPV+ + GDLAALLT L+  DVLFIDEIHRLS +VEEILYPA+EDFQ
Sbjct: 84  IAAEMGVNLKQTSGPVLERPGDLAALLTGLDRNDVLFIDEIHRLSPVVEEILYPALEDFQ 143

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           +D+M+GEGP+ARS+K++++ FTL+ ATTR G+LTNPL+DRFGI  RL FYE ++L++IV 
Sbjct: 144 IDIMIGEGPAARSIKLDIAPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYETDELQSIVL 203

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A+L G  + ++ A EIA RSRGTPRIA RLLRRVRD+AE+     IT  +AD AL  L
Sbjct: 204 RSARLLGADIAEDGANEIARRSRGTPRIANRLLRRVRDYAEIRADGRITGRVADDALGML 263

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D +G D +D + L  I   FGGGPVG++ I+A + E RD IED+IEPY+IQQG +QRT
Sbjct: 264 DVDPIGLDIMDRKLLEAIIERFGGGPVGLDNIAAAIGEVRDTIEDVIEPYLIQQGLLQRT 323

Query: 314 PRGRLLMPIAWQHLGIDIP 332
           PRGR++    W+H G+ +P
Sbjct: 324 PRGRMVTATTWEHFGLPVP 342


>gi|312962758|ref|ZP_07777246.1| Holliday junction ATP-dependent DNA helicase [Pseudomonas
           fluorescens WH6]
 gi|311282975|gb|EFQ61568.1| Holliday junction ATP-dependent DNA helicase [Pseudomonas
           fluorescens WH6]
          Length = 352

 Score =  384 bits (987), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 187/313 (59%), Positives = 239/313 (76%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP +L ++ GQ      +++FI+AA+ R+E+LDH L  GPPGLGKTTLA ++A+E+GV+
Sbjct: 24  IRPLSLADYIGQPTVREQMELFIQAARGRSESLDHTLIFGPPGLGKTTLANIIAQEMGVS 83

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            +STSGPV+ + GDLAALLTNLE  DVLFIDEIHRLS IVEE+LYPAMEDFQLD+M+GEG
Sbjct: 84  IKSTSGPVLERPGDLAALLTNLEPHDVLFIDEIHRLSPIVEEVLYPAMEDFQLDIMIGEG 143

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY   DL TIV R A + GL
Sbjct: 144 PAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQRLEFYSTADLATIVSRSASILGL 203

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  E A EIA R+RGTPRIA RLLRRVRDFAEV     IT+ +AD AL  L +D+ GFD
Sbjct: 204 PLDPEGAFEIARRARGTPRIANRLLRRVRDFAEVRAKGHITKAVADLALNLLDVDEHGFD 263

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             D R L  +   F GGPVG+++++A +SE R  IED++EPY+IQQG+I RTPRGR++  
Sbjct: 264 HQDRRLLLTMIEKFDGGPVGVDSLAAAISEERHTIEDVLEPYLIQQGYIMRTPRGRVVTR 323

Query: 322 IAWQHLGIDIPHR 334
            A+ H G++IP R
Sbjct: 324 HAYLHFGLNIPSR 336


>gi|78221966|ref|YP_383713.1| Holliday junction DNA helicase RuvB [Geobacter metallireducens
           GS-15]
 gi|97190079|sp|Q39XN6|RUVB_GEOMG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|78193221|gb|ABB30988.1| Holliday junction DNA helicase RuvB [Geobacter metallireducens
           GS-15]
          Length = 338

 Score =  384 bits (987), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 186/322 (57%), Positives = 245/322 (76%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L++ +++++D   S LRPR L+++ GQ +A  NL+VFI+AA+ R EALDHVL  GPPGLG
Sbjct: 4   LVTPDITEDDLIESSLRPRALDDYIGQEKAKGNLRVFIDAARKRGEALDHVLLYGPPGLG 63

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTTLA ++A E+GVN +STSGPVI + GDLAA+LTNLE  DVLFIDEIHRLS +VEEILY
Sbjct: 64  KTTLANIIACEMGVNIKSTSGPVIERPGDLAAILTNLEPHDVLFIDEIHRLSHVVEEILY 123

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           PAMED+QLD+++G+GPSAR++K++L +FTL+ ATTR GLL++PL+DRFG+  RL FY  +
Sbjct: 124 PAMEDYQLDIIIGQGPSARTIKLDLPKFTLVGATTRAGLLSSPLRDRFGVISRLEFYTDD 183

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +L TIV R A++  + +  E   E+A RSRGTPRIA RLLRRVRDFA+V     IT  + 
Sbjct: 184 ELTTIVTRSARILNIGIEPEGGRELARRSRGTPRIANRLLRRVRDFAQVRADGVITAPVV 243

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           D +L  L ID+ GFD +D   +  I   FGGGPVG++TI+A + E RD IED+ EP++IQ
Sbjct: 244 DESLKLLEIDEKGFDHMDRTIMLTIIDKFGGGPVGLDTIAAAIGEERDTIEDVYEPFLIQ 303

Query: 307 QGFIQRTPRGRLLMPIAWQHLG 328
            GFI RTPRGR+    A++H G
Sbjct: 304 HGFINRTPRGRVATRAAYEHFG 325


>gi|330892241|gb|EGH24902.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 353

 Score =  384 bits (987), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 188/313 (60%), Positives = 239/313 (76%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP +L ++ GQ      +++FI+AA+ R+EALDH L  GPPGLGKTTLA ++A+E+GV+
Sbjct: 24  IRPLSLADYIGQPTVREQMELFIQAARGRSEALDHTLIFGPPGLGKTTLANIIAQEMGVS 83

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            +STSGPV+ + GDLAA+LTNLE  DVLFIDEIHRLS IVEE+LYPAMEDFQLD+M+GEG
Sbjct: 84  IKSTSGPVLERPGDLAAILTNLEPNDVLFIDEIHRLSPIVEEVLYPAMEDFQLDIMIGEG 143

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY I DL TIV R A + GL
Sbjct: 144 PAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQRLEFYNIADLSTIVSRSAGILGL 203

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  + A EIA R+RGTPRIA RLLRRV DFAEV     ITR+ AD AL  L +D+ GFD
Sbjct: 204 VIEPQGAFEIARRARGTPRIANRLLRRVGDFAEVRGNGQITRQTADKALNLLDVDEHGFD 263

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             D R L  +   F GGPVGI++++A +SE R  IED++EPY+IQQG+I RTPRGR++  
Sbjct: 264 HQDRRLLLTMIEKFDGGPVGIDSLAAAISEERHTIEDVLEPYLIQQGYIMRTPRGRVVTR 323

Query: 322 IAWQHLGIDIPHR 334
            A+ H G++IP R
Sbjct: 324 HAYLHFGLNIPSR 336


>gi|317048519|ref|YP_004116167.1| Holliday junction DNA helicase RuvB [Pantoea sp. At-9b]
 gi|316950136|gb|ADU69611.1| Holliday junction DNA helicase RuvB [Pantoea sp. At-9b]
          Length = 334

 Score =  384 bits (987), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 190/330 (57%), Positives = 251/330 (76%), Gaps = 1/330 (0%)

Query: 1   MMDREGLLS-RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S  +V++E++    +RP+ L E+ GQ +    +++FI+AA+ R +ALDH+L 
Sbjct: 1   MIEADRLVSASSVNEEESLDRAIRPKLLAEYVGQPQVREQMEIFIKAAQLRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY + DL+ IV R A   GL +++E A EIA RSRGTPRIA RLLRRVRDFAEV    
Sbjct: 181 LEFYNVADLQHIVGRSAACLGLTLSEEGALEIARRSRGTPRIANRLLRRVRDFAEVRANG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            ++ E++ +AL  L +D  GFD +D + L  I   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 NMSGEVSASALDMLNVDSQGFDYMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           IEP++IQQGFIQRTPRGR+    A++H GI
Sbjct: 301 IEPFLIQQGFIQRTPRGRMATQHAYRHFGI 330


>gi|307130889|ref|YP_003882905.1| ATP-dependent DNA helicase, component of RuvABC resolvasome
           [Dickeya dadantii 3937]
 gi|306528418|gb|ADM98348.1| ATP-dependent DNA helicase, component of RuvABC resolvasome
           [Dickeya dadantii 3937]
          Length = 334

 Score =  384 bits (987), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 186/318 (58%), Positives = 242/318 (76%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           V+ E+     +RP+ L E+ GQ      +++FIEAA+ R +ALDH+L  GPPGLGKTTLA
Sbjct: 13  VADEELQDRAIRPKLLSEYVGQPVVREQMEIFIEAARKRGDALDHLLIFGPPGLGKTTLA 72

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            +VA E+GVN R+TSGPV+ KAGDLAALLTNLE  DVLFIDEIHRLS +VEE+LYPAMED
Sbjct: 73  NIVANEMGVNLRTTSGPVLEKAGDLAALLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMED 132

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           +QLD+M+GEGP+ARS+K++L  FTL+ ATTR G LT+PL+DRFGI  RL FY++ DL+ I
Sbjct: 133 YQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQRLEFYQVADLQHI 192

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           V+R A+  GL +TD+ A E+A RSRGTPRIA RLLRRVRDF+EV     I+  +A  AL 
Sbjct: 193 VKRSAQCLGLDMTDDGALEVARRSRGTPRIANRLLRRVRDFSEVKSDGAISATVAIQALD 252

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            LA+D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED++EPY+IQQGF+Q
Sbjct: 253 MLAVDSEGFDYMDRKLLLAVIDKFMGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQ 312

Query: 312 RTPRGRLLMPIAWQHLGI 329
           RTPRGR+    A++H G+
Sbjct: 313 RTPRGRIATQHAYRHFGL 330


>gi|187479253|ref|YP_787278.1| Holliday junction DNA helicase RuvB [Bordetella avium 197N]
 gi|97189925|sp|Q2KVY2|RUVB_BORA1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|115423840|emb|CAJ50391.1| holliday junction DNA helicase [Bordetella avium 197N]
          Length = 357

 Score =  384 bits (987), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 185/311 (59%), Positives = 231/311 (74%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L+E+ GQ  A   L++FI AA+ R+EALDHVL  GPPGLGKTTLA ++A E+GV 
Sbjct: 34  LRPKALQEYVGQQRAREQLEIFIAAARKRSEALDHVLLFGPPGLGKTTLAHIIAHEMGVQ 93

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGPV+ + GDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+EDFQ+D+++GEG
Sbjct: 94  MRQTSGPVLERPGDLAALLTNLERNDVLFIDEIHRLSPVVEEILYPALEDFQIDILIGEG 153

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  +DL  IV R A L   
Sbjct: 154 PAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYNTDDLAHIVTRSAGLLNA 213

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T E A E+A R+RGTPRIA RLLRRVRD+AEV     I  E A+ AL  L +D  G D
Sbjct: 214 DITPEGAREVARRARGTPRIANRLLRRVRDYAEVKAGGRIDTEAANQALAMLEVDPQGLD 273

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  I   F GGPVG+++++A + E RD IED+IEPY+IQ G++QRTPRGR+   
Sbjct: 274 LMDRKLLEAIVHKFDGGPVGVDSLAAAIGEERDTIEDVIEPYLIQHGYLQRTPRGRMATQ 333

Query: 322 IAWQHLGIDIP 332
             W+HLG+  P
Sbjct: 334 TTWRHLGLQPP 344


>gi|121595985|ref|YP_987881.1| Holliday junction DNA helicase RuvB [Acidovorax sp. JS42]
 gi|171769522|sp|A1WC30|RUVB_ACISJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|120608065|gb|ABM43805.1| Holliday junction DNA helicase RuvB [Acidovorax sp. JS42]
          Length = 356

 Score =  384 bits (987), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 191/320 (59%), Positives = 238/320 (74%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           SQE+A    LRP+ L+E+ GQ +A   L++FI AAK R EALDHVL  GPPGLGKTTL+ 
Sbjct: 27  SQEEALERALRPKLLQEYVGQAKAREQLEIFIGAAKKRGEALDHVLLFGPPGLGKTTLSH 86

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++A ELGVN R TSGPV+ K  DLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+
Sbjct: 87  IIATELGVNLRQTSGPVLEKPKDLAALLTNLERNDVLFIDEIHRLSPVVEEILYPALEDY 146

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           Q+D+M+GEGP+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  ++L  IV
Sbjct: 147 QIDIMIGEGPAARSIKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTPDELARIV 206

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R A L G  +  E   EIA RSRGTPRIA RLLRRVRD+AEV  +  IT +IA+ AL  
Sbjct: 207 MRSAGLLGAPIDAEGGMEIARRSRGTPRIANRLLRRVRDYAEVKGSGHITLDIANRALTM 266

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D  GFD +D + L  +   F GGPVG++ I+A + E    IED+IEPY+IQQG++QR
Sbjct: 267 LDVDPQGFDVMDRKLLEAVVHRFDGGPVGLDNIAASIGEESGTIEDVIEPYLIQQGYLQR 326

Query: 313 TPRGRLLMPIAWQHLGIDIP 332
           TPRGR+    A++HLG+  P
Sbjct: 327 TPRGRVATLAAYRHLGVAPP 346


>gi|21232453|ref|NP_638370.1| Holliday junction DNA helicase RuvB [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|24212374|sp|Q8P6E7|RUVB_XANCP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|21114235|gb|AAM42294.1| holliday junction binding protein, DNA helicase [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
          Length = 346

 Score =  384 bits (987), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 192/332 (57%), Positives = 247/332 (74%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M ++  + S    +++A  + +RP+ L ++ GQ      ++++I+AAKAR EA+DHVL  
Sbjct: 1   MTEQRTIASSATREDEAADASIRPKRLADYLGQQPVRDQMEIYIQAAKARGEAMDHVLIF 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTL+ V+A ELGV+ R TSGPVI KAGDLAALLTNL+  DVLFIDEIHRLS +
Sbjct: 61  GPPGLGKTTLSHVIANELGVSLRVTSGPVIEKAGDLAALLTNLQPHDVLFIDEIHRLSPV 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDFQ+D+M+G+GP+ARS+KI+L  FTLI ATTR GLLT PL+DRFGI  RL
Sbjct: 121 VEEVLYPAMEDFQIDIMIGDGPAARSIKIDLPPFTLIGATTRAGLLTAPLRDRFGIVQRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  ++L  IV R A + G+  T + A EIA R+RGTPRIA RLLRRVRDFA+V  A  
Sbjct: 181 EFYSPQELTRIVIRSAAILGIDCTPDGAAEIARRARGTPRIANRLLRRVRDFAQVKAAGH 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I   +A AA+  L +D  GFD+LD R L  I  +F GGPVG+E+++A LSE R  +ED+I
Sbjct: 241 IDLTVAQAAMQMLKVDPEGFDELDRRMLRTIVDHFDGGPVGVESLAASLSEERGTLEDVI 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EPY+IQQGF+ RT RGR++ P A+ HLG+  P
Sbjct: 301 EPYLIQQGFLIRTARGRMVTPKAYLHLGLKPP 332


>gi|251793065|ref|YP_003007791.1| Holliday junction DNA helicase RuvB [Aggregatibacter aphrophilus
           NJ8700]
 gi|247534458|gb|ACS97704.1| holliday junction DNA helicase RuvB [Aggregatibacter aphrophilus
           NJ8700]
          Length = 334

 Score =  384 bits (986), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 187/316 (59%), Positives = 236/316 (74%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           ED     +RP+ L ++ GQ + C  +++FI+AAK R +ALDH+L  GPPGLGKTTLA +V
Sbjct: 16  EDVIDRAIRPKLLADYVGQPQVCEQMEIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIV 75

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS  +EE+LYPAMED+QL
Sbjct: 76  ANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQL 135

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  RL FY + DL +IV R
Sbjct: 136 DIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYSVSDLTSIVSR 195

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A    L +   AA EIA RSRGTPRIA RLLRRVRD+A+V +   IT  IA AAL  L 
Sbjct: 196 SAVCLQLKIDVAAAYEIARRSRGTPRIANRLLRRVRDYADVRNNGMITEAIAKAALAMLD 255

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           ID  GFD LD + L  +   F GGPVG++ ++A + E RD IED++EPY+IQQGF+QRTP
Sbjct: 256 IDDAGFDYLDRKLLMAVLERFDGGPVGLDNLAAAIGEERDTIEDVVEPYLIQQGFLQRTP 315

Query: 315 RGRLLMPIAWQHLGID 330
           RGR+     ++H G++
Sbjct: 316 RGRIATLTTYRHFGVE 331


>gi|257465002|ref|ZP_05629373.1| Holliday junction DNA helicase RuvB [Actinobacillus minor 202]
 gi|257450662|gb|EEV24705.1| Holliday junction DNA helicase RuvB [Actinobacillus minor 202]
          Length = 332

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 184/306 (60%), Positives = 235/306 (76%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L ++ GQ   C  +++FI+AAK R EALDH+L  GPPGLGKTTLA +VA E+GVN
Sbjct: 23  IRPKLLADYVGQPSVCQQMEIFIQAAKLRNEALDHLLIFGPPGLGKTTLANIVANEMGVN 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS  +EE+LYPAMED+QLD+M+GEG
Sbjct: 83  IRTTSGPVLEKAGDLAAMLTNLEPYDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEG 142

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  RL FY ++DL +IVQR A    L
Sbjct: 143 PAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYGVDDLTSIVQRSANCLNL 202

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +++  A EIA RSRGTPRIA RLLRRVRD+A+V +   I+ EIA  AL  L +D  GFD
Sbjct: 203 NLSESGAHEIARRSRGTPRIANRLLRRVRDYADVRNNGIISSEIAKQALSMLDVDAEGFD 262

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D++ L  I   F GGPVG++ ++A + E RD IED++EPY+IQQGF+QRTPRGR+   
Sbjct: 263 FMDIKLLEAIVDRFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTPRGRIATQ 322

Query: 322 IAWQHL 327
             ++HL
Sbjct: 323 RTYEHL 328


>gi|240949539|ref|ZP_04753879.1| Holliday junction DNA helicase RuvB [Actinobacillus minor NM305]
 gi|240296112|gb|EER46773.1| Holliday junction DNA helicase RuvB [Actinobacillus minor NM305]
          Length = 332

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 184/306 (60%), Positives = 235/306 (76%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L ++ GQ   C  +++FI+AAK R EALDH+L  GPPGLGKTTLA +VA E+GVN
Sbjct: 23  IRPKLLADYVGQPSVCQQMEIFIQAAKLRNEALDHLLIFGPPGLGKTTLANIVANEMGVN 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS  +EE+LYPAMED+QLD+M+GEG
Sbjct: 83  IRTTSGPVLEKAGDLAAMLTNLEPYDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEG 142

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  RL FY ++DL +IVQR A    L
Sbjct: 143 PAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYGVDDLTSIVQRSANCLNL 202

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +++  A EIA RSRGTPRIA RLLRRVRD+A+V +   I+ EIA  AL  L +D  GFD
Sbjct: 203 NLSESGAHEIARRSRGTPRIANRLLRRVRDYADVRNNGIISSEIAKQALSMLDVDAEGFD 262

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D++ L  I   F GGPVG++ ++A + E RD IED++EPY+IQQGF+QRTPRGR+   
Sbjct: 263 FMDIKLLEAIVERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTPRGRIATQ 322

Query: 322 IAWQHL 327
             ++HL
Sbjct: 323 RTYEHL 328


>gi|78065250|ref|YP_368019.1| Holliday junction DNA helicase B [Burkholderia sp. 383]
 gi|97189947|sp|Q39JJ1|RUVB_BURS3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|77965995|gb|ABB07375.1| Holliday junction DNA helicase RuvB [Burkholderia sp. 383]
          Length = 356

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 194/320 (60%), Positives = 241/320 (75%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           S E+     LRPR L+++ GQ +    L++FIEAAK R+E LDHVL  GPPGLGKTTLA 
Sbjct: 21  SHEEVFERALRPRQLDDYVGQEKVRGQLEIFIEAAKRRSEPLDHVLLFGPPGLGKTTLAH 80

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++ARE+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+
Sbjct: 81  IIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDY 140

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           Q+D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY+ E L  IV
Sbjct: 141 QIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYDAEQLSRIV 200

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           +R A L    +    A EIA RSRGTPRIA RLLRRVRDFAEV     IT  +ADAAL  
Sbjct: 201 RRSASLLNAQIDPNGALEIAKRSRGTPRIANRLLRRVRDFAEVKADGQITAAVADAALAM 260

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D +GFD +D + L  I   F GGPVGI+ ++A + E RD IED++EPY+IQQGF+QR
Sbjct: 261 LDVDPVGFDLMDRKLLEAILYKFDGGPVGIDNLAAAIGEERDTIEDVLEPYLIQQGFLQR 320

Query: 313 TPRGRLLMPIAWQHLGIDIP 332
           TPRGR+   + ++H G+ +P
Sbjct: 321 TPRGRVATLLTYRHFGLSVP 340


>gi|188990570|ref|YP_001902580.1| Holliday junction DNA helicase RuvB [Xanthomonas campestris pv.
           campestris str. B100]
 gi|229484901|sp|B0RPY7|RUVB_XANCB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|167732330|emb|CAP50522.1| Holliday junction binding protein DNA helicase [Xanthomonas
           campestris pv. campestris]
          Length = 346

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 192/332 (57%), Positives = 247/332 (74%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M ++  + S    +++A  + +RP+ L ++ GQ      ++++I+AAKAR EA+DHVL  
Sbjct: 1   MTEQRTIASSATREDEAADASIRPKRLADYLGQQPVRDQMEIYIQAAKARGEAMDHVLIF 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTL+ V+A ELGV+ R TSGPVI KAGDLAALLTNL+  DVLFIDEIHRLS +
Sbjct: 61  GPPGLGKTTLSHVIANELGVSLRVTSGPVIEKAGDLAALLTNLQPHDVLFIDEIHRLSPV 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDFQ+D+M+G+GP+ARS+KI+L  FTLI ATTR GLLT PL+DRFGI  RL
Sbjct: 121 VEEVLYPAMEDFQIDIMIGDGPAARSIKIDLPPFTLIGATTRAGLLTAPLRDRFGIVQRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  ++L  IV R A + G+  T + A EIA R+RGTPRIA RLLRRVRDFA+V  A  
Sbjct: 181 EFYSPQELTRIVIRSAAILGIDCTPDGAAEIARRARGTPRIANRLLRRVRDFAQVKAAGH 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I   +A AA+  L +D  GFD+LD R L  I  +F GGPVG+E+++A LSE R  +ED+I
Sbjct: 241 IDLAVAQAAMQMLKVDPEGFDELDRRMLRTIVDHFDGGPVGVESLAASLSEERGTLEDVI 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EPY+IQQGF+ RT RGR++ P A+ HLG+  P
Sbjct: 301 EPYLIQQGFLIRTARGRMVTPKAYLHLGLKPP 332


>gi|294635835|ref|ZP_06714290.1| holliday junction DNA helicase RuvB [Edwardsiella tarda ATCC 23685]
 gi|291090807|gb|EFE23368.1| holliday junction DNA helicase RuvB [Edwardsiella tarda ATCC 23685]
          Length = 334

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 186/309 (60%), Positives = 239/309 (77%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP++L ++ GQ +    +++FI+AAK R +ALDH+L  GPPGLGKTTLA +VA E+GVN
Sbjct: 23  IRPKSLADYVGQPQVREQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS +VEE+LYPAMED+QLD+M+GEG
Sbjct: 83  LRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEG 142

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+KI+L  FTL+ ATTR G LT+PL+DRFGI  RL FY++ DL+ IV R A+  GL
Sbjct: 143 PAARSIKIDLPPFTLVGATTRAGSLTSPLRDRFGIVQRLEFYQVADLQHIVGRSAQCLGL 202

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
           ++T+E A EIA RSRGTPRIA RLLRRVRDFAEV     I   +A  AL  L +D  GFD
Sbjct: 203 SLTEEGALEIARRSRGTPRIANRLLRRVRDFAEVCADGHIDGTVAAQALNMLDVDAAGFD 262

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   F GGPVG++ ++A + E R+ IED++EPY+IQQGFIQRTPRGR+   
Sbjct: 263 YMDRKLLLAVIDKFMGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFIQRTPRGRIATG 322

Query: 322 IAWQHLGID 330
            A++H GI+
Sbjct: 323 HAYRHFGIE 331


>gi|119472453|ref|ZP_01614552.1| Holliday junction helicase, subunit B [Alteromonadales bacterium
           TW-7]
 gi|119444890|gb|EAW26189.1| Holliday junction helicase, subunit B [Alteromonadales bacterium
           TW-7]
          Length = 335

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 187/317 (58%), Positives = 238/317 (75%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           + ED+    +RP+ L ++ GQ      +++FIEAA++R EALDH+L  GPPGLGKTTLA 
Sbjct: 14  TNEDSIDRAIRPKLLADYRGQPHVKQQMEIFIEAARSRDEALDHLLIFGPPGLGKTTLAN 73

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           +VA EL VN ++TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS  VEEILYPAMED+
Sbjct: 74  IVANELNVNIKTTSGPVLEKAGDLAALLTNLEEGDVLFIDEIHRLSPQVEEILYPAMEDY 133

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  RL FY +EDL  IV
Sbjct: 134 QLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYSVEDLSHIV 193

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R A    L + D+ A EIA RSRGTPRIA RLLRRVRD+ +V    T+  ++A  AL  
Sbjct: 194 GRSAHYLELEMCDDGASEIAKRSRGTPRIANRLLRRVRDYTQVKSDGTVNADVAQQALDM 253

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           + +DK GFD +D +YL  I   F GGPVG++ ++A + E R+ IED+IEP++IQQGFIQR
Sbjct: 254 IDVDKSGFDYMDRKYLLAIIEKFMGGPVGLDNLAAAIGEERETIEDVIEPFLIQQGFIQR 313

Query: 313 TPRGRLLMPIAWQHLGI 329
           TPRGR++   A+ H G+
Sbjct: 314 TPRGRIVSDNAYHHFGL 330


>gi|307826390|ref|ZP_07656592.1| Holliday junction DNA helicase RuvB [Methylobacter tundripaludum
           SV96]
 gi|307732567|gb|EFO03442.1| Holliday junction DNA helicase RuvB [Methylobacter tundripaludum
           SV96]
          Length = 344

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 191/322 (59%), Positives = 240/322 (74%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           S E+     +RP+ L ++ GQ E    +++FI+AA AR EALDHVL  GPPGLGKTTLA 
Sbjct: 14  SDEERQDRAIRPKRLADYIGQKELREQMEIFIQAATARQEALDHVLIFGPPGLGKTTLAN 73

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++A E+ V  R TSGPV+ KAGDLAALLTNLE  DVLFIDEIHRLS  VEEILYPAMED+
Sbjct: 74  IIAAEMCVKIRQTSGPVLDKAGDLAALLTNLEPHDVLFIDEIHRLSPAVEEILYPAMEDY 133

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           QLDLM+GEGP+ARS+K++L  FTL+ ATTR GLLT+PL+DRFGI  RL FY +++L  IV
Sbjct: 134 QLDLMIGEGPAARSIKLDLPPFTLVGATTRAGLLTSPLRDRFGIVQRLEFYTVDELANIV 193

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R AK+ G+A+    A EIA RSRGTPRIA RLLRRVRD+AEV    TIT E++  AL  
Sbjct: 194 ARSAKVLGIAMEPRGAYEIARRSRGTPRIANRLLRRVRDYAEVKGNGTITEELSFQALEM 253

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D  GFD LD + L  +  +F GGPVG++T++A +SE R  IED++EPY++QQGFI R
Sbjct: 254 LKVDNNGFDSLDRKLLLAMIESFAGGPVGLDTLAAAISEERGTIEDVVEPYLLQQGFIMR 313

Query: 313 TPRGRLLMPIAWQHLGIDIPHR 334
           TPRGR++   A+ H G+  P +
Sbjct: 314 TPRGRVVTQNAYLHFGLQPPKQ 335


>gi|117923787|ref|YP_864404.1| Holliday junction DNA helicase RuvB [Magnetococcus sp. MC-1]
 gi|171460774|sp|A0L4V5|RUVB_MAGSM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|117607543|gb|ABK42998.1| Holliday junction DNA helicase subunit RuvB [Magnetococcus sp.
           MC-1]
          Length = 343

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 191/311 (61%), Positives = 236/311 (75%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L+EF GQ    +NL VF+ AAK RAEA+DH+L  GPPGLGKTT+AQ++A E+GV 
Sbjct: 24  LRPKYLKEFVGQKPLKANLTVFLHAAKQRAEAIDHILLHGPPGLGKTTMAQIIAWEMGVG 83

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            RSTSGPVI KAGDLAALLTNL   DVLF+DEIHRLS  VEEILYPAMEDFQLDLM+GEG
Sbjct: 84  LRSTSGPVIDKAGDLAALLTNLNPGDVLFVDEIHRLSPAVEEILYPAMEDFQLDLMIGEG 143

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSARSVKI+L RFTL+ ATTR G+LT+PL+DRFGI  R+ FYE ++L+ IV R A + G+
Sbjct: 144 PSARSVKIDLPRFTLVGATTRAGMLTSPLRDRFGILARMQFYEPDELQQIVTRSASIMGI 203

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            ++ + A EIA RSRGTPRIA RLLRRVRDFA+VA    I +++AD ALL L +D+ G D
Sbjct: 204 DISADGAFEIARRSRGTPRIANRLLRRVRDFAQVAGPGYIDKDLADRALLALEVDRNGLD 263

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D R L  +   F GGPVG++T++A + E R  IED+IEPY+I QG + RTPRGR    
Sbjct: 264 NMDHRLLKALLDKFAGGPVGLDTLAAAIGEERSTIEDVIEPYLILQGMLDRTPRGRKATH 323

Query: 322 IAWQHLGIDIP 332
            ++  +G   P
Sbjct: 324 ASYTAMGRTAP 334


>gi|301384819|ref|ZP_07233237.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv.
           tomato Max13]
 gi|302063527|ref|ZP_07255068.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv.
           tomato K40]
 gi|302130609|ref|ZP_07256599.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|44888474|sp|Q87Y35|RUVB_PSESM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
          Length = 353

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 194/337 (57%), Positives = 250/337 (74%), Gaps = 4/337 (1%)

Query: 1   MMDREGLLSRNVSQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M+D + L++  V   D D  L   +RP +L ++ GQ      +++FI+AA+ R+EALDH 
Sbjct: 1   MIDADRLIT-AVGGRDRDEQLDRAIRPLSLADYIGQPTVREQMELFIQAARGRSEALDHT 59

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTLA ++A+E+GV+ +STSGPV+ + GDLAA+LTNLE  DVLFIDEIHRL
Sbjct: 60  LIFGPPGLGKTTLANIIAQEMGVSIKSTSGPVLERPGDLAAILTNLEPNDVLFIDEIHRL 119

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           S IVEE+LYPAMEDFQLD+M+GEGP+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI 
Sbjct: 120 SPIVEEVLYPAMEDFQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIV 179

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            RL FY I DL TIV R A + GL +    A EIA R+RGTPRIA RLLRRVRDFA+V  
Sbjct: 180 QRLEFYNIADLSTIVARSAGILGLVIEPAGAFEIARRARGTPRIANRLLRRVRDFAQVRG 239

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
              ITR+ AD AL  L +D+ GFD  D R L  +   F GGPVG+++++A +SE R  IE
Sbjct: 240 NGQITRQTADKALNLLDVDEHGFDHQDRRLLLTMIEKFDGGPVGVDSLAAAISEERHTIE 299

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           D++EPY+IQQG+I RTPRGR++   A+ H G++IP R
Sbjct: 300 DVLEPYLIQQGYIMRTPRGRVVTRHAYLHFGLNIPTR 336


>gi|91789932|ref|YP_550884.1| Holliday junction DNA helicase RuvB [Polaromonas sp. JS666]
 gi|122967369|sp|Q124Q6|RUVB_POLSJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|91699157|gb|ABE45986.1| Holliday junction DNA helicase RuvB [Polaromonas sp. JS666]
          Length = 354

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 188/319 (58%), Positives = 237/319 (74%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
            E+A    LRP+  +E+ GQ +    L++FI AAK R+EALDHVL  GPPGLGKTTL+ +
Sbjct: 28  HEEAIERALRPKLFDEYVGQAKVREQLEIFIGAAKKRSEALDHVLLFGPPGLGKTTLSHI 87

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +A ELGVN R TSGPV+ K  DLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+Q
Sbjct: 88  IAHELGVNLRQTSGPVLEKPKDLAALLTNLEKNDVLFIDEIHRLSPVVEEILYPALEDYQ 147

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           +D+M+GEGP+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  E+L  IV+
Sbjct: 148 IDIMIGEGPAARSIKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTAEELGRIVR 207

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A L    + +E   EIA RSRGTPRIA RLLRRVRD+A+V     IT +IA+ AL  L
Sbjct: 208 RSASLLNAPMDEEGGFEIARRSRGTPRIANRLLRRVRDYADVKGTGQITLDIANKALAML 267

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D  GFD +D + L  +   F GGPVG++ I+A + E RD IED+IEPY+IQQG++QRT
Sbjct: 268 DVDPQGFDVMDRKLLEAVIHRFDGGPVGLDNIAASIGEERDTIEDVIEPYLIQQGYLQRT 327

Query: 314 PRGRLLMPIAWQHLGIDIP 332
           PRGR+    A++HLG+  P
Sbjct: 328 PRGRIATLAAYRHLGVAPP 346


>gi|15641847|ref|NP_231479.1| Holliday junction DNA helicase RuvB [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121591339|ref|ZP_01678627.1| Holliday junction DNA helicase RuvB [Vibrio cholerae 2740-80]
 gi|153803758|ref|ZP_01958344.1| Holliday junction DNA helicase RuvB [Vibrio cholerae MZO-3]
 gi|153824053|ref|ZP_01976720.1| Holliday junction DNA helicase RuvB [Vibrio cholerae B33]
 gi|227081974|ref|YP_002810525.1| Holliday junction DNA helicase RuvB [Vibrio cholerae M66-2]
 gi|229508058|ref|ZP_04397563.1| holliday junction DNA helicase RuvB [Vibrio cholerae BX 330286]
 gi|229511703|ref|ZP_04401182.1| holliday junction DNA helicase RuvB [Vibrio cholerae B33]
 gi|229515225|ref|ZP_04404685.1| holliday junction DNA helicase RuvB [Vibrio cholerae TMA 21]
 gi|229518842|ref|ZP_04408285.1| holliday junction DNA helicase RuvB [Vibrio cholerae RC9]
 gi|229520305|ref|ZP_04409731.1| holliday junction DNA helicase RuvB [Vibrio cholerae TM 11079-80]
 gi|229523863|ref|ZP_04413268.1| holliday junction DNA helicase RuvB [Vibrio cholerae bv. albensis
           VL426]
 gi|229529132|ref|ZP_04418522.1| holliday junction DNA helicase RuvB [Vibrio cholerae 12129(1)]
 gi|229607619|ref|YP_002878267.1| Holliday junction DNA helicase RuvB [Vibrio cholerae MJ-1236]
 gi|254292160|ref|ZP_04962931.1| Holliday junction DNA helicase RuvB [Vibrio cholerae AM-19226]
 gi|254848931|ref|ZP_05238281.1| holliday junction ATP-dependent DNA helicase ruvB [Vibrio cholerae
           MO10]
 gi|255745395|ref|ZP_05419344.1| holliday junction DNA helicase RuvB [Vibrio cholera CIRS 101]
 gi|298498116|ref|ZP_07007923.1| Holliday junction DNA helicase RuvB [Vibrio cholerae MAK 757]
 gi|20140290|sp|Q9KR02|RUVB_VIBCH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|254767449|sp|C3LNE8|RUVB_VIBCM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|9656373|gb|AAF94993.1| Holliday junction DNA helicase RuvB [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121546803|gb|EAX56969.1| Holliday junction DNA helicase RuvB [Vibrio cholerae 2740-80]
 gi|124120706|gb|EAY39449.1| Holliday junction DNA helicase RuvB [Vibrio cholerae MZO-3]
 gi|126518425|gb|EAZ75648.1| Holliday junction DNA helicase RuvB [Vibrio cholerae B33]
 gi|150421923|gb|EDN13899.1| Holliday junction DNA helicase RuvB [Vibrio cholerae AM-19226]
 gi|227009862|gb|ACP06074.1| Holliday junction DNA helicase RuvB [Vibrio cholerae M66-2]
 gi|229332906|gb|EEN98392.1| holliday junction DNA helicase RuvB [Vibrio cholerae 12129(1)]
 gi|229337444|gb|EEO02461.1| holliday junction DNA helicase RuvB [Vibrio cholerae bv. albensis
           VL426]
 gi|229342671|gb|EEO07663.1| holliday junction DNA helicase RuvB [Vibrio cholerae TM 11079-80]
 gi|229343531|gb|EEO08506.1| holliday junction DNA helicase RuvB [Vibrio cholerae RC9]
 gi|229347930|gb|EEO12889.1| holliday junction DNA helicase RuvB [Vibrio cholerae TMA 21]
 gi|229351668|gb|EEO16609.1| holliday junction DNA helicase RuvB [Vibrio cholerae B33]
 gi|229355563|gb|EEO20484.1| holliday junction DNA helicase RuvB [Vibrio cholerae BX 330286]
 gi|229370274|gb|ACQ60697.1| holliday junction DNA helicase RuvB [Vibrio cholerae MJ-1236]
 gi|254844636|gb|EET23050.1| holliday junction ATP-dependent DNA helicase ruvB [Vibrio cholerae
           MO10]
 gi|255737225|gb|EET92621.1| holliday junction DNA helicase RuvB [Vibrio cholera CIRS 101]
 gi|297542449|gb|EFH78499.1| Holliday junction DNA helicase RuvB [Vibrio cholerae MAK 757]
          Length = 334

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 186/323 (57%), Positives = 242/323 (74%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           +S +   E+     +RP+ L ++ GQ      +++FI+AA+ R EALDH+L  GPPGLGK
Sbjct: 11  ISNHFKDEEVIDRAIRPKKLADYQGQDHVRDQMEIFIQAAQMRQEALDHLLIFGPPGLGK 70

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127
           TTLA +VA E+GVN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS +VEE+LYP
Sbjct: 71  TTLANIVANEMGVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYP 130

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           AMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  RL +Y++ D
Sbjct: 131 AMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEYYKVAD 190

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           L+ IVQR A+  GL++  E A E+A R+RGTPRIA RLLRRVRD+AEV     I  + AD
Sbjct: 191 LQHIVQRSAQCLGLSMDSEGALEVARRARGTPRIANRLLRRVRDYAEVKGDGHICAQTAD 250

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
            AL  L +D  GFD +D + L  I   F GGPVGI+ ++A + E +D IED++EP++IQQ
Sbjct: 251 RALNMLDVDHQGFDYMDRKLLLAIMEKFSGGPVGIDNLAAAIGEEKDTIEDVLEPFLIQQ 310

Query: 308 GFIQRTPRGRLLMPIAWQHLGID 330
           G++QRTPRGR+    A+ H GI+
Sbjct: 311 GYLQRTPRGRIATDRAYLHFGIE 333


>gi|260222295|emb|CBA31716.1| Holliday junction ATP-dependent DNA helicase ruvB [Curvibacter
           putative symbiont of Hydra magnipapillata]
          Length = 355

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 189/320 (59%), Positives = 239/320 (74%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           + E+A    LRP+ L+E+ GQ +    L++FI AAK R EALDHVL  GPPGLGKTTL+ 
Sbjct: 26  NSEEAIERALRPKLLDEYVGQAKVREQLEIFIGAAKKRDEALDHVLLFGPPGLGKTTLSH 85

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++A ELGVN R TSGPV+ K  DLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+
Sbjct: 86  IIAHELGVNLRQTSGPVLEKPKDLAALLTNLEKNDVLFIDEIHRLSAVVEEILYPALEDY 145

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           ++D+M+GEGP+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  E+L  IV
Sbjct: 146 KIDIMIGEGPAARSIKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTNEELARIV 205

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           +R A L G+ + +    EIA RSRGTPRIA RLLRRVRDFAEV     IT +IA+ AL  
Sbjct: 206 KRSAGLLGVPMDENGGFEIARRSRGTPRIANRLLRRVRDFAEVKGDGKITLDIANRALAM 265

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D  GFD +D + L  +   F GGPVG++ I+A + E R+ IED+IEPY+IQQG++QR
Sbjct: 266 LDVDPQGFDLMDRKLLEAVIHRFDGGPVGLDNIAASIGEERETIEDVIEPYLIQQGYLQR 325

Query: 313 TPRGRLLMPIAWQHLGIDIP 332
           TPRGR+    A++HLG+  P
Sbjct: 326 TPRGRIATLAAYRHLGVTAP 345


>gi|262276111|ref|ZP_06053920.1| holliday junction DNA helicase RuvB [Grimontia hollisae CIP 101886]
 gi|262219919|gb|EEY71235.1| holliday junction DNA helicase RuvB [Grimontia hollisae CIP 101886]
          Length = 335

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 190/322 (59%), Positives = 237/322 (73%), Gaps = 1/322 (0%)

Query: 13  SQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           S+ED  I   +RP+ L ++ GQ      +++FI AA+ R EALDH+L  GPPGLGKTTLA
Sbjct: 14  SREDDIIDRAIRPKMLADYQGQDHVRDQMEIFIHAARKRKEALDHLLIFGPPGLGKTTLA 73

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            +VA E+ VN R+TSGPV+ KAGDLAALLTNLE  DVLFIDEIHRLS +VEE+LYPAMED
Sbjct: 74  NIVANEMDVNIRTTSGPVLEKAGDLAALLTNLEPNDVLFIDEIHRLSPVVEEVLYPAMED 133

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           +QLD+M+GEGP+ARS+KI+L  FTL+ ATTR G LT+PL+DRFGI  RL +Y I DLK I
Sbjct: 134 YQLDIMIGEGPAARSIKIDLPPFTLVGATTRAGSLTSPLRDRFGITQRLEYYNIADLKGI 193

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           VQR A    L + +E A EIA R+RGTPRIA RLLRRVRD+AEV     I  +IA  AL 
Sbjct: 194 VQRSANYLNLEIDEEGAYEIARRARGTPRIANRLLRRVRDYAEVKADGKIDADIASKALD 253

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L +D  GFD +D + LT I   F GGPVG++ ++A + E +D IED++EPY+IQQG++Q
Sbjct: 254 MLDVDNQGFDYMDRKLLTAIIEKFDGGPVGLDNLAAAIGEAKDTIEDVLEPYLIQQGYLQ 313

Query: 312 RTPRGRLLMPIAWQHLGIDIPH 333
           RTPRGR+    A+ H G D P 
Sbjct: 314 RTPRGRIASQRAYLHFGFDRPE 335


>gi|153217382|ref|ZP_01951133.1| Holliday junction DNA helicase RuvB [Vibrio cholerae 1587]
 gi|153830580|ref|ZP_01983247.1| Holliday junction DNA helicase RuvB [Vibrio cholerae 623-39]
 gi|124113600|gb|EAY32420.1| Holliday junction DNA helicase RuvB [Vibrio cholerae 1587]
 gi|148873942|gb|EDL72077.1| Holliday junction DNA helicase RuvB [Vibrio cholerae 623-39]
 gi|327484397|gb|AEA78804.1| Holliday junction DNA helicase RuvB [Vibrio cholerae LMA3894-4]
          Length = 334

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 186/322 (57%), Positives = 241/322 (74%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           S +   E+     +RP+ L ++ GQ      +++FI+AA+ R EALDH+L  GPPGLGKT
Sbjct: 12  SNHFKDEEVIDRAIRPKKLADYQGQDHVRDQMEIFIQAAQMRQEALDHLLIFGPPGLGKT 71

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           TLA +VA E+GVN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS +VEE+LYPA
Sbjct: 72  TLANIVANEMGVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPA 131

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           MED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  RL +Y++ DL
Sbjct: 132 MEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEYYKVADL 191

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           + IVQR A+  GL++  E A E+A R+RGTPRIA RLLRRVRD+AEV     I  + AD 
Sbjct: 192 QHIVQRSAQCLGLSMDSEGALEVARRARGTPRIANRLLRRVRDYAEVKGDGHICAQTADR 251

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL  L +D  GFD +D + L  I   F GGPVGI+ ++A + E +D IED++EP++IQQG
Sbjct: 252 ALNMLDVDHQGFDYMDRKLLLAIMEKFSGGPVGIDNLAAAIGEEKDTIEDVLEPFLIQQG 311

Query: 309 FIQRTPRGRLLMPIAWQHLGID 330
           ++QRTPRGR+    A+ H GI+
Sbjct: 312 YLQRTPRGRIATDRAYLHFGIE 333


>gi|332993888|gb|AEF03943.1| Holliday junction DNA helicase RuvB [Alteromonas sp. SN2]
          Length = 334

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 188/330 (56%), Positives = 247/330 (74%), Gaps = 1/330 (0%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L++ + S ED  I   +RP+ L+++TGQ   C  +++FI+AA+ R +ALDH+L 
Sbjct: 1   MIEADRLITPDASTEDEVIDRAIRPKMLDDYTGQPHVCEQMEIFIQAARKRDDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+ V+ ++TSGPV+ KAGDLAALLTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMDVSIKTTSGPVLEKAGDLAALLTNLERNDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY ++DL TIV R A    L ++ E A EIA RSRGTPRIA RLLRRVRD+AE+    
Sbjct: 181 LEFYSVKDLTTIVARSASYLNLDMSSEGAQEIARRSRGTPRIANRLLRRVRDYAEIKSDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           T+  E A  AL  L +DK GFD +D + L  I   F GGPVG++ ++A + E ++ IED+
Sbjct: 241 TVGVETAAKALDMLDVDKEGFDYMDRKLLCAIIEKFDGGPVGLDNLAAAIGEEKETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           IEP++IQQGF+QRTPRGR++   A+ H G 
Sbjct: 301 IEPFLIQQGFLQRTPRGRIVSQRAYLHFGF 330


>gi|22126138|ref|NP_669561.1| Holliday junction DNA helicase RuvB [Yersinia pestis KIM 10]
 gi|45441703|ref|NP_993242.1| Holliday junction DNA helicase RuvB [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51596367|ref|YP_070558.1| Holliday junction DNA helicase RuvB [Yersinia pseudotuberculosis IP
           32953]
 gi|108807437|ref|YP_651353.1| Holliday junction DNA helicase RuvB [Yersinia pestis Antiqua]
 gi|108811698|ref|YP_647465.1| Holliday junction DNA helicase RuvB [Yersinia pestis Nepal516]
 gi|145598359|ref|YP_001162435.1| Holliday junction DNA helicase RuvB [Yersinia pestis Pestoides F]
 gi|149366013|ref|ZP_01888048.1| Holliday junction DNA helicase [Yersinia pestis CA88-4125]
 gi|153948000|ref|YP_001401003.1| Holliday junction DNA helicase RuvB [Yersinia pseudotuberculosis IP
           31758]
 gi|165928350|ref|ZP_02224182.1| Holliday junction DNA helicase RuvB [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165938878|ref|ZP_02227432.1| Holliday junction DNA helicase RuvB [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166009231|ref|ZP_02230129.1| Holliday junction DNA helicase RuvB [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166210761|ref|ZP_02236796.1| Holliday junction DNA helicase RuvB [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167401423|ref|ZP_02306920.1| Holliday junction DNA helicase RuvB [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167419932|ref|ZP_02311685.1| Holliday junction DNA helicase RuvB [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167424488|ref|ZP_02316241.1| Holliday junction DNA helicase RuvB [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|170024377|ref|YP_001720882.1| Holliday junction DNA helicase RuvB [Yersinia pseudotuberculosis
           YPIII]
 gi|186895408|ref|YP_001872520.1| Holliday junction DNA helicase RuvB [Yersinia pseudotuberculosis
           PB1/+]
 gi|218929165|ref|YP_002347040.1| Holliday junction DNA helicase RuvB [Yersinia pestis CO92]
 gi|229894772|ref|ZP_04509952.1| ATP-dependent DNA helicase, component of RuvABC resolvasome
           [Yersinia pestis Pestoides A]
 gi|229897475|ref|ZP_04512631.1| ATP-dependent DNA helicase, component of RuvABC resolvasome
           [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229898121|ref|ZP_04513270.1| ATP-dependent DNA helicase, component of RuvABC resolvasome
           [Yersinia pestis biovar Orientalis str. India 195]
 gi|229901980|ref|ZP_04517101.1| ATP-dependent DNA helicase, component of RuvABC resolvasome
           [Yersinia pestis Nepal516]
 gi|270490836|ref|ZP_06207910.1| Holliday junction DNA helicase RuvB [Yersinia pestis KIM D27]
 gi|294503876|ref|YP_003567938.1| Holliday junction DNA helicase RuvB [Yersinia pestis Z176003]
 gi|20140070|sp|Q8ZEU5|RUVB_YERPE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|68715422|sp|Q66AT9|RUVB_YERPS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|123072836|sp|Q1C814|RUVB_YERPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|123373278|sp|Q1CJG5|RUVB_YERPN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|166231571|sp|A4TJK0|RUVB_YERPP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|167012673|sp|A7FIC5|RUVB_YERP3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|238688451|sp|B1JLL0|RUVB_YERPY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|238691371|sp|B2K324|RUVB_YERPB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|21959099|gb|AAM85812.1|AE013828_3 Holliday junction helicase subunit A [Yersinia pestis KIM 10]
 gi|45436565|gb|AAS62119.1| Holliday junction DNA helicase [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51589649|emb|CAH21279.1| Holliday junction DNA helicase [Yersinia pseudotuberculosis IP
           32953]
 gi|108775346|gb|ABG17865.1| Holliday junction DNA helicase subunit RuvB [Yersinia pestis
           Nepal516]
 gi|108779350|gb|ABG13408.1| Holliday junction DNA helicase subunit RuvB [Yersinia pestis
           Antiqua]
 gi|115347776|emb|CAL20693.1| Holliday junction DNA helicase [Yersinia pestis CO92]
 gi|145210055|gb|ABP39462.1| Holliday junction DNA helicase subunit RuvB [Yersinia pestis
           Pestoides F]
 gi|149292426|gb|EDM42500.1| Holliday junction DNA helicase [Yersinia pestis CA88-4125]
 gi|152959495|gb|ABS46956.1| Holliday junction DNA helicase RuvB [Yersinia pseudotuberculosis IP
           31758]
 gi|165913241|gb|EDR31864.1| Holliday junction DNA helicase RuvB [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165919633|gb|EDR36966.1| Holliday junction DNA helicase RuvB [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165991786|gb|EDR44087.1| Holliday junction DNA helicase RuvB [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166207941|gb|EDR52421.1| Holliday junction DNA helicase RuvB [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166961627|gb|EDR57648.1| Holliday junction DNA helicase RuvB [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167049119|gb|EDR60527.1| Holliday junction DNA helicase RuvB [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167056370|gb|EDR66139.1| Holliday junction DNA helicase RuvB [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169750911|gb|ACA68429.1| Holliday junction DNA helicase RuvB [Yersinia pseudotuberculosis
           YPIII]
 gi|186698434|gb|ACC89063.1| Holliday junction DNA helicase RuvB [Yersinia pseudotuberculosis
           PB1/+]
 gi|229680876|gb|EEO76971.1| ATP-dependent DNA helicase, component of RuvABC resolvasome
           [Yersinia pestis Nepal516]
 gi|229688837|gb|EEO80904.1| ATP-dependent DNA helicase, component of RuvABC resolvasome
           [Yersinia pestis biovar Orientalis str. India 195]
 gi|229693812|gb|EEO83861.1| ATP-dependent DNA helicase, component of RuvABC resolvasome
           [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229702245|gb|EEO90264.1| ATP-dependent DNA helicase, component of RuvABC resolvasome
           [Yersinia pestis Pestoides A]
 gi|262362005|gb|ACY58726.1| Holliday junction DNA helicase RuvB [Yersinia pestis D106004]
 gi|262365858|gb|ACY62415.1| Holliday junction DNA helicase RuvB [Yersinia pestis D182038]
 gi|270339340|gb|EFA50117.1| Holliday junction DNA helicase RuvB [Yersinia pestis KIM D27]
 gi|294354335|gb|ADE64676.1| Holliday junction DNA helicase RuvB [Yersinia pestis Z176003]
 gi|320015264|gb|ADV98835.1| ATP-dependent DNA helicase, component of RuvABC resolvasome
           [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 334

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 192/330 (58%), Positives = 245/330 (74%), Gaps = 1/330 (0%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S  V  ++  I   +RP+ L E+ GQ      +++FI+AAK R +ALDHVL 
Sbjct: 1   MIEADRLISAAVINDEESIDRAIRPKLLTEYVGQPHVREQMEIFIQAAKQRGDALDHVLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIIANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IV R AK  GL +T E A ++A RSRGTPRI  RLLRRVRDFAEV    
Sbjct: 181 LEFYQVADLEHIVSRSAKCLGLELTPEGAHQLARRSRGTPRITNRLLRRVRDFAEVRADG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  E+A  AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 AINGEVAMKALDMLNVDAEGFDFMDRKLLLAVIDKFMGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           +EPY+IQQGFIQRTPRGR+    A++H GI
Sbjct: 301 LEPYLIQQGFIQRTPRGRIATNHAYKHFGI 330


>gi|229592300|ref|YP_002874419.1| Holliday junction DNA helicase RuvB [Pseudomonas fluorescens SBW25]
 gi|259495674|sp|C3JYS7|RUVB_PSEFS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|229364166|emb|CAY51819.1| holliday junction DNA helicase [Pseudomonas fluorescens SBW25]
          Length = 352

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 187/313 (59%), Positives = 239/313 (76%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP +L ++ GQ      +++FI+AA+ R+E+LDH L  GPPGLGKTTLA ++A+E+GV+
Sbjct: 24  IRPLSLADYIGQPTVREQMELFIQAARGRSESLDHTLIFGPPGLGKTTLANIIAQEMGVS 83

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            +STSGPV+ + GDLAALLTNLE  DVLFIDEIHRLS IVEE+LYPAMEDFQLD+M+GEG
Sbjct: 84  IKSTSGPVLERPGDLAALLTNLEPHDVLFIDEIHRLSPIVEEVLYPAMEDFQLDIMIGEG 143

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY   DL TIV R A + GL
Sbjct: 144 PAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQRLEFYSTADLATIVSRSAGILGL 203

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  E A EIA R+RGTPRIA RLLRRVRDFAEV     IT+ +AD AL  L +D+ GFD
Sbjct: 204 PLDPEGAFEIARRARGTPRIANRLLRRVRDFAEVRAKGHITKAVADLALNLLDVDEHGFD 263

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             D R L  +   F GGPVG+++++A +SE R  IED++EPY+IQQG+I RTPRGR++  
Sbjct: 264 HQDRRLLLTMIEKFDGGPVGVDSLAAAISEERHTIEDVLEPYLIQQGYIMRTPRGRVVTR 323

Query: 322 IAWQHLGIDIPHR 334
            A+ H G++IP R
Sbjct: 324 HAYLHFGLNIPSR 336


>gi|53804470|ref|YP_113687.1| Holliday junction DNA helicase RuvB [Methylococcus capsulatus str.
           Bath]
 gi|68715360|sp|Q609L0|RUVB_METCA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|53758231|gb|AAU92522.1| Holliday junction DNA helicase RuvB [Methylococcus capsulatus str.
           Bath]
          Length = 345

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 191/320 (59%), Positives = 236/320 (73%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E+A    +RP+ LE++ GQ      + +FI+AA  R EALDHVL  GPPGLGKTTLA ++
Sbjct: 15  EEAIDRAIRPKRLEDYVGQRAMREQMAIFIQAALGRGEALDHVLIFGPPGLGKTTLANII 74

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A ELGVN R TSGPV+ KAGDLAALLTNLE RDVLFIDEIHRL  +VEE+LYPAMED+Q+
Sbjct: 75  ANELGVNVRHTSGPVLEKAGDLAALLTNLEPRDVLFIDEIHRLGAVVEEVLYPAMEDYQI 134

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D+M+GEGP+ARS+K++L  FTL+ ATTR GLLT+PL+DRFGI  RL FY +E+L  IV R
Sbjct: 135 DIMIGEGPAARSIKLDLPPFTLVGATTRAGLLTSPLRDRFGIVHRLEFYSVEELSRIVAR 194

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A++ G  +T E A E+A RSRGTPRIA RLLRRVRDFA+V     IT E+A  AL  L 
Sbjct: 195 SARILGSEITPEGAAEVARRSRGTPRIANRLLRRVRDFAQVMADGRITGEVAGKALEMLD 254

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D  GFDQ D R L  +   F GGPVG++ ++A + E R  IED++EPY+IQQGFI RTP
Sbjct: 255 VDPNGFDQSDRRLLLTMMEKFEGGPVGLDNLAAAIGEERGTIEDVLEPYLIQQGFIMRTP 314

Query: 315 RGRLLMPIAWQHLGIDIPHR 334
           RGR+    A+ H G+  P R
Sbjct: 315 RGRVATRNAYLHFGLKPPQR 334


>gi|238751591|ref|ZP_04613081.1| Holliday junction DNA helicase RuvB [Yersinia rohdei ATCC 43380]
 gi|238710153|gb|EEQ02381.1| Holliday junction DNA helicase RuvB [Yersinia rohdei ATCC 43380]
          Length = 334

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 193/330 (58%), Positives = 246/330 (74%), Gaps = 1/330 (0%)

Query: 1   MMDREGLLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S  V S E++    +RP+ L E+ GQ      +++FI+AAK R +ALDHVL 
Sbjct: 1   MIEADRLISAGVISDEESIDRAIRPKMLAEYVGQPHVREQMEIFIQAAKQRGDALDHVLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IV R AK  GL +T E A ++A RSRGTPRI  RLLRRVRDFAEV    
Sbjct: 181 LEFYQVADLEHIVSRSAKCLGLELTPEGAHQLARRSRGTPRITNRLLRRVRDFAEVRADG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  ++A  AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 AINGDVAMKALDMLNVDAEGFDFMDRKLLLAVIDKFMGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           +EPY+IQQGFIQRTPRGR+    A++H GI
Sbjct: 301 LEPYLIQQGFIQRTPRGRIATNHAYKHFGI 330


>gi|282164972|ref|YP_003357357.1| Holliday junction ATP-dependent DNA helicase RuvB [Methanocella
           paludicola SANAE]
 gi|282157286|dbj|BAI62374.1| Holliday junction ATP-dependent DNA helicase RuvB [Methanocella
           paludicola SANAE]
          Length = 344

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 180/306 (58%), Positives = 238/306 (77%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP++L+EF GQ +   NLKVFIEAA+ R E LDHVL  GPPGLGKTTLA ++ARE+G N
Sbjct: 33  LRPKSLDEFIGQRKIKENLKVFIEAARKRNEPLDHVLLYGPPGLGKTTLAHIIAREMGAN 92

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGP I + GDLAA+LTN+++ DV+FIDEIHRLS +VEE++YPAMED+++D+++G+G
Sbjct: 93  IRITSGPAIERPGDLAAILTNIKEGDVIFIDEIHRLSHVVEEVMYPAMEDYEIDIIIGKG 152

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSARS+++ L +FTL+ ATTR GLLT+PL+DRFG+ +R +FYE  DLKTI+ R A + G+
Sbjct: 153 PSARSIRLELPKFTLVGATTRAGLLTSPLRDRFGMSMRFDFYEPRDLKTIIDRSASILGV 212

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            ++++ + EIA RSRGTPRIA RLLRRVRDFA V + K I REI + +L RL +D +G D
Sbjct: 213 ELSEDGSMEIAKRSRGTPRIANRLLRRVRDFASVGNKKVIDREIVNDSLNRLDVDYLGLD 272

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D R L  I ++F GGPVG ET++  +SE  + IED+ EPY+IQ GFI RTPRGR+   
Sbjct: 273 GMDRRILKKIVKDFDGGPVGAETLAVTVSEEVETIEDVYEPYLIQIGFINRTPRGRMSTK 332

Query: 322 IAWQHL 327
            A +HL
Sbjct: 333 AAVEHL 338


>gi|238756970|ref|ZP_04618158.1| Holliday junction DNA helicase RuvB [Yersinia aldovae ATCC 35236]
 gi|238704800|gb|EEP97329.1| Holliday junction DNA helicase RuvB [Yersinia aldovae ATCC 35236]
          Length = 334

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 193/330 (58%), Positives = 247/330 (74%), Gaps = 1/330 (0%)

Query: 1   MMDREGLLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S +V S E++    +RP+ L E+ GQ      +++FI+AAK R +ALDHVL 
Sbjct: 1   MIEADRLISASVISDEESIDRAIRPKLLAEYVGQPHVREQMEIFIQAAKQRGDALDHVLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IV R AK  GL +T E A ++A RSRGTPRI  RLLRRVRDFAEV    
Sbjct: 181 LEFYQVADLEHIVARSAKCLGLELTAEGAHQLARRSRGTPRITNRLLRRVRDFAEVRADG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  ++A  AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 AINGDVAMKALDMLNVDAEGFDFMDRKLLLAVIDKFMGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           +EPY+IQQGFIQRTPRGR+    A++H GI
Sbjct: 301 LEPYLIQQGFIQRTPRGRIATNHAYKHFGI 330


>gi|310643558|ref|YP_003948316.1| holliday junction ATP-dependent DNA helicase ruvb [Paenibacillus
           polymyxa SC2]
 gi|309248508|gb|ADO58075.1| Holliday junction ATP-dependent DNA helicase ruvB [Paenibacillus
           polymyxa SC2]
          Length = 335

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 195/333 (58%), Positives = 245/333 (73%), Gaps = 3/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M DR  ++S N+  ED    L LRPR L E+ GQ +   NLKV+IEAAK R EALDHVL 
Sbjct: 1   MDDR--IISANLMMEDQTAELSLRPRYLNEYIGQNQVKENLKVYIEAAKMRKEALDHVLL 58

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A ELGVN R+TSGP I + GDLAALLTNL++ DVLFIDEIHRL  
Sbjct: 59  YGPPGLGKTTLANIIANELGVNLRTTSGPAIERPGDLAALLTNLQEGDVLFIDEIHRLHR 118

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEE++YPAMEDF LD+M+G+GPSARSV+++L  FTLI ATTR GLL+ PL+DRFG+  R
Sbjct: 119 TVEEVMYPAMEDFALDIMIGKGPSARSVRLDLPPFTLIGATTRAGLLSAPLRDRFGVISR 178

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY  ++L  IV R A +  + +  +AA EIA+RSRGTPRIA RLL+RVRDFA+VA   
Sbjct: 179 LEFYTTDELAYIVSRNADIMEIEIVGDAAEEIALRSRGTPRIANRLLKRVRDFAQVAGDG 238

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  E+A  AL RL ID +G D++D + L  +  +F GGPVG++TI+A + E    IED+
Sbjct: 239 IIHSELAAEALKRLQIDPLGLDEIDHKMLKAMIHSFRGGPVGLDTIAATIGEESQTIEDV 298

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
            EPY++Q G +QRTPRGR + P A+ HLGI +P
Sbjct: 299 YEPYLLQIGLLQRTPRGRTVTPAAYAHLGIPMP 331


>gi|238788519|ref|ZP_04632312.1| Holliday junction DNA helicase RuvB [Yersinia frederiksenii ATCC
           33641]
 gi|238723432|gb|EEQ15079.1| Holliday junction DNA helicase RuvB [Yersinia frederiksenii ATCC
           33641]
          Length = 334

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 193/330 (58%), Positives = 246/330 (74%), Gaps = 1/330 (0%)

Query: 1   MMDREGLLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S  V S E++    +RP+ L E+ GQ      +++FI+AAK R +ALDHVL 
Sbjct: 1   MIEADRLISAGVISDEESIDRAIRPKLLAEYVGQPHVREQMEIFIQAAKQRGDALDHVLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IV R AK  GL +T E A ++A RSRGTPRI  RLLRRVRDFAEV    
Sbjct: 181 LEFYQVADLEHIVSRSAKCLGLELTAEGAHQLARRSRGTPRITNRLLRRVRDFAEVRADG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  ++A  AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 AINGDVAMKALDMLNVDAEGFDFMDRKLLLAVIDKFMGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           +EPY+IQQGFIQRTPRGR+    A++H GI
Sbjct: 301 LEPYLIQQGFIQRTPRGRIATNHAYKHFGI 330


>gi|297579364|ref|ZP_06941292.1| Holliday junction DNA helicase RuvB [Vibrio cholerae RC385]
 gi|297536958|gb|EFH75791.1| Holliday junction DNA helicase RuvB [Vibrio cholerae RC385]
          Length = 334

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 186/323 (57%), Positives = 241/323 (74%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           +S +   E+     +RP+ L ++ GQ      +++FI+AA  R EALDH+L  GPPGLGK
Sbjct: 11  ISNHFKDEEVIDRAIRPKKLADYQGQDHVRDQMEIFIQAAHMRQEALDHLLIFGPPGLGK 70

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127
           TTLA +VA E+GVN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS +VEE+LYP
Sbjct: 71  TTLANIVANEMGVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYP 130

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           AMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  RL +Y++ D
Sbjct: 131 AMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEYYKVAD 190

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           L+ IVQR A+  GL++  E A E+A R+RGTPRIA RLLRRVRD+AEV     I  + AD
Sbjct: 191 LQHIVQRSAQCLGLSMDSEGALEVARRARGTPRIANRLLRRVRDYAEVKGDGHICAQTAD 250

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
            AL  L +D  GFD +D + L  I   F GGPVGI+ ++A + E +D IED++EP++IQQ
Sbjct: 251 RALNMLDVDHQGFDYMDRKLLLAIMEKFSGGPVGIDNLAAAIGEEKDTIEDVLEPFLIQQ 310

Query: 308 GFIQRTPRGRLLMPIAWQHLGID 330
           G++QRTPRGR+    A+ H GI+
Sbjct: 311 GYLQRTPRGRIATDRAYLHFGIE 333


>gi|120554624|ref|YP_958975.1| Holliday junction DNA helicase RuvB [Marinobacter aquaeolei VT8]
 gi|166231500|sp|A1U1B9|RUVB_MARAV RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|120324473|gb|ABM18788.1| Holliday junction DNA helicase RuvB [Marinobacter aquaeolei VT8]
          Length = 343

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 189/335 (56%), Positives = 248/335 (74%), Gaps = 2/335 (0%)

Query: 1   MMDREGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S    + E+     +RP  L E+ GQ      +++FI AA+ R EALDHVL 
Sbjct: 1   MIESDRLISAKAGEYEEVHDRAIRPTLLSEYVGQPTVREQMEIFISAARGRQEALDHVLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A E+GV+ ++TSGPV+ KAGDLAA+LTNLE+ DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIIANEMGVSIKTTSGPVLEKAGDLAAMLTNLEEGDVLFIDEIHRLSA 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ ATTR GLLT+PL+DRFGI  R
Sbjct: 121 AVEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGLLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY  +DL  I+ R A+L+ + + +  A EIA RSRGTPRIA RLLRRVRDFAEV    
Sbjct: 181 LEFYNHQDLTHIITRSARLSSVEIDEAGAFEIARRSRGTPRIANRLLRRVRDFAEVRSNG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT +IAD AL  L +D  GFD +D R L  +   F GGPVG+E+++A +SE R  IED+
Sbjct: 241 HITADIADQALNMLKVDSQGFDHMDRRLLLAMIEKFDGGPVGVESLAAAISEERGTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           +EP++IQQG++ RTPRGR++   A+QH G+ +P R
Sbjct: 301 LEPFLIQQGYMVRTPRGRMVTSNAYQHFGV-VPPR 334


>gi|123442634|ref|YP_001006611.1| Holliday junction DNA helicase RuvB [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|332161519|ref|YP_004298096.1| Holliday junction DNA helicase RuvB [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|166231570|sp|A1JRJ5|RUVB_YERE8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|122089595|emb|CAL12444.1| Holliday junction DNA helicase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|318605501|emb|CBY26999.1| holliday junction DNA helicase RuvB [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325665749|gb|ADZ42393.1| Holliday junction DNA helicase RuvB [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330860794|emb|CBX71081.1| holliday junction ATP-dependent DNA helicase ruvB [Yersinia
           enterocolitica W22703]
          Length = 334

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 193/330 (58%), Positives = 246/330 (74%), Gaps = 1/330 (0%)

Query: 1   MMDREGLLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S  V S E++    +RP+ L E+ GQ      +++FI+AAK R +ALDHVL 
Sbjct: 1   MIEADRLISAGVISDEESIDRAIRPKLLAEYVGQPHVREQMEIFIQAAKQRGDALDHVLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IV R AK  GL +T E A ++A RSRGTPRI  RLLRRVRDFAEV    
Sbjct: 181 LEFYQVADLEHIVSRSAKCLGLELTPEGAHQLARRSRGTPRITNRLLRRVRDFAEVRADG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  ++A  AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 AINGDVAMKALDMLNVDAEGFDFMDRKLLLAVIDKFMGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           +EPY+IQQGFIQRTPRGR+    A++H GI
Sbjct: 301 LEPYLIQQGFIQRTPRGRIATNHAYKHFGI 330


>gi|153832507|ref|ZP_01985174.1| holliday junction DNA helicase RuvB [Vibrio harveyi HY01]
 gi|156973891|ref|YP_001444798.1| Holliday junction DNA helicase B [Vibrio harveyi ATCC BAA-1116]
 gi|166231569|sp|A7N1I0|RUVB_VIBHB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|148871302|gb|EDL70174.1| holliday junction DNA helicase RuvB [Vibrio harveyi HY01]
 gi|156525485|gb|ABU70571.1| hypothetical protein VIBHAR_01601 [Vibrio harveyi ATCC BAA-1116]
          Length = 334

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 186/317 (58%), Positives = 240/317 (75%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           +ED     +RP+ L ++ GQ      +++FI+AA+ R EALDH+L  GPPGLGKTTLA +
Sbjct: 17  EEDVIDRAIRPKKLADYQGQDHVRDQMEIFIKAAQLRNEALDHLLIFGPPGLGKTTLANI 76

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           VA E+ VN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS +VEE+LYPAMED+Q
Sbjct: 77  VANEMEVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQ 136

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           LD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  RL +Y+++DL+ IVQ
Sbjct: 137 LDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGITQRLEYYKVKDLQDIVQ 196

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A   GL++  E A E+A R+RGTPRIA RLLRRVRD+AEV     I  + AD AL  L
Sbjct: 197 RSADCLGLSMESEGALEVARRARGTPRIANRLLRRVRDYAEVKGNGHICADTADKALNML 256

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D  GFD +D + L  I   FGGGPVG++ ++A + E +D IED++EPY+IQQG++QRT
Sbjct: 257 DVDAEGFDYMDRKLLLAIMEKFGGGPVGLDNMAAAIGEEKDTIEDVLEPYLIQQGYLQRT 316

Query: 314 PRGRLLMPIAWQHLGID 330
           PRGR+    A+ H GI+
Sbjct: 317 PRGRIATDRAYLHFGIE 333


>gi|325274575|ref|ZP_08140633.1| Holliday junction DNA helicase RuvB [Pseudomonas sp. TJI-51]
 gi|324100302|gb|EGB98090.1| Holliday junction DNA helicase RuvB [Pseudomonas sp. TJI-51]
          Length = 348

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 186/321 (57%), Positives = 240/321 (74%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           +E+     +RP  L E+ GQ      + +FI+AA+ R+E+LDH L  GPPGLGKTTLA +
Sbjct: 15  REEVQDRAIRPLILSEYIGQPVVREQMSLFIQAARGRSESLDHTLIFGPPGLGKTTLANI 74

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +A E+GV+ +STSGP++ + GDLAA+LTNLE  DVLFIDEIHRLS +VEE+LYPAMEDFQ
Sbjct: 75  IAHEMGVSVKSTSGPILERPGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDFQ 134

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           LD+M+GEGP+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  +DL TIV 
Sbjct: 135 LDIMIGEGPAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQRLEFYSDKDLATIVS 194

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A + GLA+ D  A EIA R+RGTPRIA RLLRRVRD+AEV     IT+ +AD AL  L
Sbjct: 195 RSANILGLAIEDLGAYEIARRARGTPRIANRLLRRVRDYAEVRGKGQITKAVADMALNLL 254

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D+ GFD  D R L  +   F GGPVG++ ++A +SE R  IED++EPY+IQQG+I RT
Sbjct: 255 DVDERGFDHSDRRLLLTMIEKFDGGPVGVDNLAAAISEERHTIEDVLEPYLIQQGYIMRT 314

Query: 314 PRGRLLMPIAWQHLGIDIPHR 334
           PRGR++   A+ H G++IP R
Sbjct: 315 PRGRVVTRHAYLHFGLNIPGR 335


>gi|332653062|ref|ZP_08418807.1| holliday junction DNA helicase RuvB [Ruminococcaceae bacterium D16]
 gi|332518208|gb|EGJ47811.1| holliday junction DNA helicase RuvB [Ruminococcaceae bacterium D16]
          Length = 355

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 185/328 (56%), Positives = 247/328 (75%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           E L++ ++++ED     LRP+TL E+ GQ +A  NL+VFI+AAK R E LDHVL  GPPG
Sbjct: 17  EPLVTTSLTREDEGEYSLRPKTLREYIGQEKAKGNLEVFIQAAKMRNEPLDHVLLHGPPG 76

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTL+ ++A E+GVN R TSGP I KAGDLAALLTNL + D+LF+DEIHRL+  VEE+
Sbjct: 77  LGKTTLSGIIANEMGVNVRITSGPAIEKAGDLAALLTNLNENDILFVDEIHRLNRSVEEV 136

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPAMEDF +D+++G+GPSA S++++L +FTLI ATTR G L+ PL+DRFG+ +RL  Y 
Sbjct: 137 LYPAMEDFAIDIIIGKGPSANSIRLDLPKFTLIGATTRAGQLSAPLRDRFGVTLRLELYT 196

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            E+L  IV+R A + G+ + D+ A EIA RSRGTPRIA R+LRRVRDFA+V     IT++
Sbjct: 197 PEELALIVKRSAGILGVPIEDDGAMEIARRSRGTPRIANRMLRRVRDFAQVRAGGVITKK 256

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +AD AL  L ID +G D +D R L  I  N+ GGPVG+ET++A ++E    +ED+ EPY+
Sbjct: 257 VADEALTALEIDHLGLDSIDHRMLRSIIENYRGGPVGLETLAATINEEAVTLEDVYEPYL 316

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           +Q GF+ RTPRGR + P A+QHLG+ +P
Sbjct: 317 MQLGFLTRTPRGRCVTPKAYQHLGLSVP 344


>gi|313901947|ref|ZP_07835364.1| Holliday junction DNA helicase subunit RuvB [Thermaerobacter
           subterraneus DSM 13965]
 gi|313467793|gb|EFR63290.1| Holliday junction DNA helicase subunit RuvB [Thermaerobacter
           subterraneus DSM 13965]
          Length = 380

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 188/333 (56%), Positives = 252/333 (75%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ E ++S  +   DA +   LRP++L++F GQ      L ++I+AA+ R +ALDHVL 
Sbjct: 1   MIEEERVVSSRLQAGDAPLEAGLRPQSLDDFPGQERVKEKLSIYIQAARERGDALDHVLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKT+LAQV+ARELGV FR TSGP I +AGDLAALLTNL DRDVLFIDEIHRL  
Sbjct: 61  YGPPGLGKTSLAQVIARELGVGFRMTSGPAIERAGDLAALLTNLNDRDVLFIDEIHRLPR 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEEILYPAMEDF LDL++G+GP+ARS++I+L RFTL+ ATTR G LT PL+DRFG+ +R
Sbjct: 121 PVEEILYPAMEDFALDLIIGKGPAARSLRIDLPRFTLVGATTRAGRLTGPLRDRFGVLLR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y  E+L  IV R A + G+A+  E A E+A R+RGTPR+A RLLRR+RD+A+V    
Sbjct: 181 LEYYRPEELTRIVLRAAGILGVAIDPEGAAEVARRARGTPRVANRLLRRLRDYAQVRAEG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT E+A A L  + +D +G D+ D R L ++A+++GGGPVG+ET++A + E  + IED+
Sbjct: 241 VITAEVARAGLDLMEVDPLGLDRADRRLLAVMAQHYGGGPVGLETLAAAIGEEPETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
            EPY++Q GF+QRTPRGR+L   A++HLG+ +P
Sbjct: 301 YEPYLMQMGFLQRTPRGRVLARRAYEHLGLPVP 333


>gi|121610986|ref|YP_998793.1| Holliday junction DNA helicase RuvB [Verminephrobacter eiseniae
           EF01-2]
 gi|166231567|sp|A1WQ68|RUVB_VEREI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|121555626|gb|ABM59775.1| Holliday junction DNA helicase RuvB [Verminephrobacter eiseniae
           EF01-2]
          Length = 354

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 189/316 (59%), Positives = 238/316 (75%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           QE A    LRP+ L+E+ GQV+A   L++FI AA+ R EALDHVL  GPPGLGKTTL+ +
Sbjct: 25  QEQAIERALRPKLLQEYVGQVKAREQLEIFIGAARQRGEALDHVLLFGPPGLGKTTLSHI 84

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +A ELGVN R TSGPV+ K  DLAALLTNLE+RDVLFIDEIHRLS +VEEILYPA+ED+Q
Sbjct: 85  IAAELGVNLRQTSGPVLEKPKDLAALLTNLENRDVLFIDEIHRLSPVVEEILYPALEDYQ 144

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           +D+M+GEGP+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  ++L  IV+
Sbjct: 145 IDIMIGEGPAARSIKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYSAQELARIVK 204

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A L G+ + D    EIA RSRGTPRIA RLLRRVRD+ +V     IT++IA+ AL  L
Sbjct: 205 RSAGLLGVPMDDAGGLEIARRSRGTPRIANRLLRRVRDYTQVKADGHITKDIAERALAML 264

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D  G D +D + L  +   F GGPVG++ I+A + E    IED+IEPY+IQQGF+QRT
Sbjct: 265 DVDPEGLDVMDRKLLEAVIHRFDGGPVGLDNIAASIGEETGTIEDVIEPYLIQQGFLQRT 324

Query: 314 PRGRLLMPIAWQHLGI 329
           PRGR+    A++HLGI
Sbjct: 325 PRGRIATQAAFRHLGI 340


>gi|313672962|ref|YP_004051073.1| holliday junction DNA helicase ruvb [Calditerrivibrio nitroreducens
           DSM 19672]
 gi|312939718|gb|ADR18910.1| Holliday junction DNA helicase RuvB [Calditerrivibrio nitroreducens
           DSM 19672]
          Length = 347

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 183/323 (56%), Positives = 243/323 (75%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           + S+    ED   + +RP+   E+ GQ +   NLK+F+EAAK R E LDH LF GPPGLG
Sbjct: 5   IFSKEKLGEDVINNHIRPKRFSEYVGQKKIIENLKIFVEAAKLRNEPLDHTLFYGPPGLG 64

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTTLA +++ E+ VN +STSGPVI K GDLAA+LTNL + DVLFIDEIHRL   VEEILY
Sbjct: 65  KTTLANIISNEMNVNIKSTSGPVIEKPGDLAAILTNLSEGDVLFIDEIHRLHSSVEEILY 124

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           PAMEDFQLD+++G+GPSAR++KI+L +FTL+ ATTR+GLLT+PL+DRFG+  +L+FY  E
Sbjct: 125 PAMEDFQLDIVIGQGPSARTIKIDLPKFTLVGATTRIGLLTSPLRDRFGMVFKLDFYSEE 184

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +L +I++RG+ +    + + AA EIA RSRGTPRIA R+LRRVRDFA+V +   I+ +IA
Sbjct: 185 ELISIIKRGSTILNCTIDESAAVEIAKRSRGTPRIAHRILRRVRDFAQVMNNGYISIDIA 244

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
              L RL ID+ G D+ D  YL  I   + GGPVG++T+SA LSE RD +ED+ EPY+I 
Sbjct: 245 KLGLERLEIDEQGLDKADRAYLNTIIEKYDGGPVGLDTLSATLSEERDTLEDVTEPYLIF 304

Query: 307 QGFIQRTPRGRLLMPIAWQHLGI 329
           +GFI++TPRGR+   +A++HL I
Sbjct: 305 RGFIKKTPRGRIATKLAYEHLRI 327


>gi|107021765|ref|YP_620092.1| Holliday junction DNA helicase RuvB [Burkholderia cenocepacia AU
           1054]
 gi|116688711|ref|YP_834334.1| Holliday junction DNA helicase B [Burkholderia cenocepacia HI2424]
 gi|170732008|ref|YP_001763955.1| Holliday junction DNA helicase RuvB [Burkholderia cenocepacia
           MC0-3]
 gi|254246309|ref|ZP_04939630.1| Holliday junction DNA helicase RuvB [Burkholderia cenocepacia
           PC184]
 gi|123245284|sp|Q1BZ36|RUVB_BURCA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|166231467|sp|A0K4L4|RUVB_BURCH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|238688561|sp|B1JVV3|RUVB_BURCC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|105891954|gb|ABF75119.1| Holliday junction DNA helicase RuvB [Burkholderia cenocepacia AU
           1054]
 gi|116646800|gb|ABK07441.1| Holliday junction DNA helicase RuvB [Burkholderia cenocepacia
           HI2424]
 gi|124871085|gb|EAY62801.1| Holliday junction DNA helicase RuvB [Burkholderia cenocepacia
           PC184]
 gi|169815250|gb|ACA89833.1| Holliday junction DNA helicase RuvB [Burkholderia cenocepacia
           MC0-3]
          Length = 356

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 193/320 (60%), Positives = 241/320 (75%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           S E+     LRPR L+++ GQ +    L++FIEAAK R+E LDHVL  GPPGLGKTTLA 
Sbjct: 21  SHEEVFERALRPRQLDDYVGQEKVRGQLEIFIEAAKRRSEPLDHVLLFGPPGLGKTTLAH 80

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++ARE+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+
Sbjct: 81  IIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDY 140

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           Q+D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY+ E L  IV
Sbjct: 141 QIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYDAEQLSRIV 200

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           +R A L    +    A EIA R+RGTPRIA RLLRRVRDFAEV     IT  +ADAAL  
Sbjct: 201 RRSASLLNAQIDPNGALEIAKRARGTPRIANRLLRRVRDFAEVKADGQITAAVADAALAM 260

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D +GFD +D + L  I   F GGPVGI+ ++A + E RD IED++EPY+IQQGF+QR
Sbjct: 261 LDVDPVGFDLMDRKLLEAILYKFDGGPVGIDNLAAAIGEERDTIEDVLEPYLIQQGFLQR 320

Query: 313 TPRGRLLMPIAWQHLGIDIP 332
           TPRGR+   + ++H G+ +P
Sbjct: 321 TPRGRVATLLTYRHFGLSVP 340


>gi|237746840|ref|ZP_04577320.1| holliday junction DNA helicase B [Oxalobacter formigenes HOxBLS]
 gi|229378191|gb|EEO28282.1| holliday junction DNA helicase B [Oxalobacter formigenes HOxBLS]
          Length = 354

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 186/319 (58%), Positives = 238/319 (74%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
            E+A    LRP+ L E+ GQ +    L++FI AA+ R EALDH L  GPPGLGKTTLA +
Sbjct: 22  NEEAVERALRPKYLSEYVGQHKTREQLEIFIAAARKRQEALDHTLLFGPPGLGKTTLAHI 81

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +ARE+GVN R TSGPV+ + GDLAA+LTNLE  DVLFIDEIHR+S +VEEILYPA+ED+Q
Sbjct: 82  IAREMGVNLRQTSGPVLERPGDLAAILTNLEANDVLFIDEIHRMSPVVEEILYPALEDYQ 141

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           +D+++GEGP+ARSVK++L  FTLI ATTR G+LTNPL+DRFG+  RL FY+I+DL  IV 
Sbjct: 142 IDILIGEGPAARSVKLDLQPFTLIGATTRAGMLTNPLRDRFGVVARLEFYDIDDLTRIVT 201

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A L    + ++ A EIA R+RGTPRIA RLLRRVRD+AEV     ITRE+ADAAL  L
Sbjct: 202 RSAMLLKAPIVEDGAREIARRARGTPRIANRLLRRVRDYAEVKGTGEITREMADAALKML 261

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D +GFD +D + L  +   F GGPVGI  ++A + E  D IED++EPY+IQQG++QRT
Sbjct: 262 DVDPVGFDLMDRKLLEAVLFKFSGGPVGIANLAAAIGEEVDTIEDVLEPYLIQQGYLQRT 321

Query: 314 PRGRLLMPIAWQHLGIDIP 332
           PRGR+     ++H G+  P
Sbjct: 322 PRGRIATTATYRHFGVVAP 340


>gi|206561677|ref|YP_002232442.1| Holliday junction DNA helicase RuvB [Burkholderia cenocepacia
           J2315]
 gi|238693125|sp|B4EES7|RUVB_BURCJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|198037719|emb|CAR53662.1| holliday junction DNA helicase [Burkholderia cenocepacia J2315]
          Length = 356

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 193/320 (60%), Positives = 241/320 (75%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           S E+     LRPR L+++ GQ +    L++FIEAAK R+E LDHVL  GPPGLGKTTLA 
Sbjct: 21  SHEEVFERALRPRQLDDYVGQEKVRGQLEIFIEAAKRRSEPLDHVLLFGPPGLGKTTLAH 80

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++ARE+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+
Sbjct: 81  IIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDY 140

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           Q+D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY+ + L  IV
Sbjct: 141 QIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYDADQLSRIV 200

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           +R A L    +    A EIA RSRGTPRIA RLLRRVRDFAEV     IT  +ADAAL  
Sbjct: 201 RRSASLLNAQIDPNGALEIAKRSRGTPRIANRLLRRVRDFAEVKADGQITAAVADAALAM 260

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D +GFD +D + L  I   F GGPVGI+ ++A + E RD IED++EPY+IQQGF+QR
Sbjct: 261 LDVDPVGFDLMDRKLLEAILYKFDGGPVGIDNLAAAIGEERDTIEDVLEPYLIQQGFLQR 320

Query: 313 TPRGRLLMPIAWQHLGIDIP 332
           TPRGR+   + ++H G+ +P
Sbjct: 321 TPRGRVATLLTYRHFGLSVP 340


>gi|90411665|ref|ZP_01219675.1| Holliday junction DNA helicase RuvB [Photobacterium profundum 3TCK]
 gi|90327555|gb|EAS43908.1| Holliday junction DNA helicase RuvB [Photobacterium profundum 3TCK]
          Length = 337

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 190/334 (56%), Positives = 247/334 (73%), Gaps = 2/334 (0%)

Query: 1   MMDREGLLSRNVSQEDADI--SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M++ + L+S +    D ++    +RP+ L ++ GQ      +++FI+AA+ R EALDH+L
Sbjct: 1   MIEADRLISNSFESRDDEVIDRAIRPKLLNDYQGQDHVRGQMEIFIKAAQLRDEALDHLL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA +VA E+GV+ R+TSGPV+ KAGDLAALLTNLE  DVLFIDEIHRLS
Sbjct: 61  IFGPPGLGKTTLANIVANEMGVSIRTTSGPVLEKAGDLAALLTNLEPNDVLFIDEIHRLS 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
             VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  
Sbjct: 121 PHVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGITQ 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           RL +Y++ DLK IVQR A   GL++ +E A E+A R+RGTPRIA RLLRRVRD+AEV   
Sbjct: 181 RLEYYKVGDLKDIVQRSADCLGLSMEEEGALEMAHRARGTPRIANRLLRRVRDYAEVVGN 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             I  + A  AL  L +D  GFD +D + L  I   F GGPVG++ ++A + E +D IED
Sbjct: 241 GIICADTAKKALDMLDVDSSGFDYMDRKLLLAIIDKFMGGPVGLDNLAAAIGEEKDTIED 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++EPY+IQQGF+QRTPRGR+    A+ H G+DIP
Sbjct: 301 VLEPYLIQQGFLQRTPRGRIATHRAYLHFGLDIP 334


>gi|167586147|ref|ZP_02378535.1| Holliday junction DNA helicase RuvB [Burkholderia ubonensis Bu]
          Length = 355

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 194/320 (60%), Positives = 240/320 (75%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           S E+     LRPR L+E+ GQ +    L++FIEAAK R+E LDHVL  GPPGLGKTTLA 
Sbjct: 20  SHEEVFERALRPRQLDEYVGQEKVRGQLEIFIEAAKRRSEPLDHVLLFGPPGLGKTTLAH 79

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++ARE+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+
Sbjct: 80  IIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDY 139

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           Q+D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY+ E L  IV
Sbjct: 140 QIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYDAEQLSRIV 199

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           +R A L    +    A EIA RSRGTPRIA RLLRRVRD+AEV     IT  +ADAAL  
Sbjct: 200 RRSASLLNAQIDPSGALEIAKRSRGTPRIANRLLRRVRDYAEVKADGNITAAVADAALAM 259

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D +GFD +D + L  I   F GGPVGI+ ++A + E RD IED++EPY+IQQGF+QR
Sbjct: 260 LDVDPVGFDLMDRKLLEAILYKFDGGPVGIDNLAAAIGEERDTIEDVLEPYLIQQGFLQR 319

Query: 313 TPRGRLLMPIAWQHLGIDIP 332
           TPRGR+   + ++H G+  P
Sbjct: 320 TPRGRVATLLTYRHFGLAAP 339


>gi|317051308|ref|YP_004112424.1| Holliday junction DNA helicase RuvB [Desulfurispirillum indicum S5]
 gi|316946392|gb|ADU65868.1| Holliday junction DNA helicase RuvB [Desulfurispirillum indicum S5]
          Length = 341

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 185/331 (55%), Positives = 243/331 (73%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M  E L+S  + +ED     LRP  L ++ GQ     NL VF++AAK R E +DH+LF G
Sbjct: 1   MSEERLISGQIHEEDQQELRLRPENLSQYIGQQRLKDNLSVFLQAAKGRGEPVDHILFSG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTT+A ++A E+GVN RSTSGPVI K+ DLAA+LTNL+  DVLFIDEIHRL+  V
Sbjct: 61  PPGLGKTTIAHIIANEMGVNIRSTSGPVIEKSADLAAILTNLQSGDVLFIDEIHRLNTSV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILYPAMEDFQLD+++G+GP+ARS+KI+L  FTLI ATTR GLL++PL+DRFG+  RL 
Sbjct: 121 EEILYPAMEDFQLDIIIGQGPAARSIKIDLPPFTLIGATTRAGLLSSPLRDRFGVHSRLE 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FYE++DL  I+ R A + G+A+  + A E+A RSRGTPRIA RLLRRVRDFA++    +I
Sbjct: 181 FYEVDDLLAIITRSASILGIAIEGDGARELARRSRGTPRIANRLLRRVRDFAQIKGHGSI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
              IA  AL +L +D+ G D LD + L  I   F GGPVG++T++A  +E R  +ED+ E
Sbjct: 241 DHAIARYALEQLEVDEAGLDYLDRKVLLAIIEKFSGGPVGLDTLAACTAEERGTLEDVCE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           PY+IQQG +QRTPRGR++    ++H G++ P
Sbjct: 301 PYLIQQGLLQRTPRGRIITENGYRHFGLNSP 331


>gi|238796297|ref|ZP_04639806.1| Holliday junction DNA helicase RuvB [Yersinia mollaretii ATCC
           43969]
 gi|238719742|gb|EEQ11549.1| Holliday junction DNA helicase RuvB [Yersinia mollaretii ATCC
           43969]
          Length = 335

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 193/330 (58%), Positives = 246/330 (74%), Gaps = 1/330 (0%)

Query: 1   MMDREGLLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S  V S E++    +RP+ L E+ GQ      +++FI+AAK R +ALDHVL 
Sbjct: 2   MIEADRLISAGVISDEESIDRAIRPKLLAEYVGQPHVREQMEIFIQAAKQRGDALDHVLI 61

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 62  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 121

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 122 VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 181

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IV R AK  GL +T E A ++A RSRGTPRI  RLLRRVRDFAEV    
Sbjct: 182 LEFYQVADLEHIVARSAKCLGLELTAEGAHQLARRSRGTPRITNRLLRRVRDFAEVRADG 241

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  ++A  AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED+
Sbjct: 242 AINGDVAMKALDMLNVDAEGFDFMDRKLLLAVIDKFMGGPVGLDNLAAAIGEERETIEDV 301

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           +EPY+IQQGFIQRTPRGR+    A++H GI
Sbjct: 302 LEPYLIQQGFIQRTPRGRIATNHAYKHFGI 331


>gi|147673267|ref|YP_001217379.1| Holliday junction DNA helicase RuvB [Vibrio cholerae O395]
 gi|172047658|sp|A5F760|RUVB_VIBC3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|146315150|gb|ABQ19689.1| Holliday junction DNA helicase RuvB [Vibrio cholerae O395]
 gi|227013743|gb|ACP09953.1| Holliday junction DNA helicase RuvB [Vibrio cholerae O395]
          Length = 334

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 185/323 (57%), Positives = 241/323 (74%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           +S +   E+     +RP+ L ++ GQ      +++FI+AA+ R EALDH+L  GPPGLGK
Sbjct: 11  ISNHFKDEEVIDRAIRPKKLADYQGQDHVRDQMEIFIQAAQMRQEALDHLLIFGPPGLGK 70

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127
           TTLA +VA E+GVN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS +VEE+LYP
Sbjct: 71  TTLANIVANEMGVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYP 130

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           AMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  RL +Y++ D
Sbjct: 131 AMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEYYKVAD 190

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           L+ IVQR A+  GL++  E A E+A R+RGTPRI  RLLRRVRD+AEV     I  + AD
Sbjct: 191 LQHIVQRSAQCLGLSMDSEGALEVARRARGTPRIVNRLLRRVRDYAEVKGDGHICAQTAD 250

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
            AL  L +D  GFD +D + L  I   F GGPVGI+ ++A + E +D IED++EP++IQQ
Sbjct: 251 RALNMLDVDHQGFDYMDRKLLLAIMEKFSGGPVGIDNLAAAIGEEKDTIEDVLEPFLIQQ 310

Query: 308 GFIQRTPRGRLLMPIAWQHLGID 330
           G++QRTPRGR+    A+ H GI+
Sbjct: 311 GYLQRTPRGRIATDRAYLHFGIE 333


>gi|254253225|ref|ZP_04946543.1| Holliday junction DNA helicase RuvB [Burkholderia dolosa AUO158]
 gi|124895834|gb|EAY69714.1| Holliday junction DNA helicase RuvB [Burkholderia dolosa AUO158]
          Length = 355

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 194/320 (60%), Positives = 240/320 (75%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           S E+     LRPR L+++ GQ +    L++FIEAAK R+E LDHVL  GPPGLGKTTLA 
Sbjct: 20  SHEEVFERALRPRQLDDYVGQEKVRGQLEIFIEAAKRRSEPLDHVLLFGPPGLGKTTLAH 79

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++ARE+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+
Sbjct: 80  IIAREMGVNLRQTSGPVLERAGDLAALLTNLEPNDVLFIDEIHRLSPVVEEILYPALEDY 139

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           Q+D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY+ E L  IV
Sbjct: 140 QIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYDAEQLSRIV 199

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           +R A L    +    A EIA RSRGTPRIA RLLRRVRDFAEV     IT  +ADAAL  
Sbjct: 200 KRSASLLNAQIDPNGALEIAKRSRGTPRIANRLLRRVRDFAEVKADGQITAAVADAALAM 259

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D +GFD +D + L  I   F GGPVGI+ ++A + E RD IED++EPY+IQQGF+QR
Sbjct: 260 LDVDPVGFDLMDRKLLEAILHKFDGGPVGIDNLAAAIGEERDTIEDVLEPYLIQQGFLQR 319

Query: 313 TPRGRLLMPIAWQHLGIDIP 332
           TPRGR+   + ++H G+  P
Sbjct: 320 TPRGRVATLLTYRHFGLAAP 339


>gi|134294765|ref|YP_001118500.1| Holliday junction DNA helicase RuvB [Burkholderia vietnamiensis G4]
 gi|20140131|sp|Q93LP2|RUVB_BURCE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|166231473|sp|A4JBL2|RUVB_BURVG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|14572550|gb|AAK64609.1| RuvB [Burkholderia cepacia]
 gi|134137922|gb|ABO53665.1| Holliday junction DNA helicase RuvB [Burkholderia vietnamiensis G4]
          Length = 355

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 193/320 (60%), Positives = 240/320 (75%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           S E+     LRPR L+++ GQ +    L++FIEAAK R+E LDHVL  GPPGLGKTTLA 
Sbjct: 20  SHEEVFERALRPRQLDDYVGQEKVRGQLEIFIEAAKRRSEPLDHVLLFGPPGLGKTTLAH 79

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++ARE+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+
Sbjct: 80  IIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDY 139

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           Q+D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY+ E L  IV
Sbjct: 140 QIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYDAEQLSRIV 199

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           +R A L    +    A EIA RSRGTPRIA RLLRRVRD+AEV     IT  +ADAAL  
Sbjct: 200 RRSAALLNAQIDPNGALEIAKRSRGTPRIANRLLRRVRDYAEVKADGQITAAVADAALAM 259

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D +GFD +D + L  I   F GGPVGI+ ++A + E RD IED++EPY+IQQGF+QR
Sbjct: 260 LDVDPVGFDLMDRKLLEAILHKFDGGPVGIDNLAAAIGEERDTIEDVLEPYLIQQGFLQR 319

Query: 313 TPRGRLLMPIAWQHLGIDIP 332
           TPRGR+   + ++H G+  P
Sbjct: 320 TPRGRVATLLTYRHFGLSAP 339


>gi|325923398|ref|ZP_08185063.1| Holliday junction DNA helicase subunit RuvB [Xanthomonas gardneri
           ATCC 19865]
 gi|325546113|gb|EGD17302.1| Holliday junction DNA helicase subunit RuvB [Xanthomonas gardneri
           ATCC 19865]
          Length = 345

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 196/330 (59%), Positives = 250/330 (75%), Gaps = 5/330 (1%)

Query: 2   MDREGLLSRNVSQED--ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           MDR  +++ + ++ED  AD S+ RP+ L ++ GQ      + ++I+AAKAR EA+DHVL 
Sbjct: 1   MDR--IIASSATREDDAADASI-RPKRLADYLGQQPVREQMDIYIQAAKARGEAMDHVLI 57

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTL+ V+A ELGV+ RSTSGPVI KAGDLAALLTNL+  DVLFIDEIHRLS 
Sbjct: 58  FGPPGLGKTTLSHVIANELGVSLRSTSGPVIEKAGDLAALLTNLQPHDVLFIDEIHRLSP 117

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMEDFQ+D+M+G+GP+ARS+KI+L  FTLI ATTR GLLT PL+DRFGI  R
Sbjct: 118 VVEEVLYPAMEDFQIDIMIGDGPAARSIKIDLPPFTLIGATTRAGLLTAPLRDRFGIVQR 177

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY  E+L  IV R A + G+  T + A EIA R+RGTPRIA RLLRRVRDFA+V  + 
Sbjct: 178 LEFYSPEELTRIVIRSAAILGIDCTPDGAAEIARRARGTPRIANRLLRRVRDFAQVKASG 237

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I   +A AA+  L +D  GFD+LD R L +I  +F GGPVG+E+++A LSE R  +ED+
Sbjct: 238 HIDLPVAQAAMQMLKVDPEGFDELDRRMLRVIVDHFDGGPVGVESLAASLSEERGTLEDV 297

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           IEPY+IQQGF+ RT RGR+    A++HLG+
Sbjct: 298 IEPYLIQQGFLIRTARGRMATNKAYRHLGL 327


>gi|238762968|ref|ZP_04623935.1| Holliday junction DNA helicase RuvB [Yersinia kristensenii ATCC
           33638]
 gi|238698726|gb|EEP91476.1| Holliday junction DNA helicase RuvB [Yersinia kristensenii ATCC
           33638]
          Length = 334

 Score =  382 bits (981), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 193/330 (58%), Positives = 246/330 (74%), Gaps = 1/330 (0%)

Query: 1   MMDREGLLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S  V S E++    +RP+ L E+ GQ      +++FI+AAK R +ALDHVL 
Sbjct: 1   MIEADRLISAGVISDEESIDRAIRPKLLAEYVGQPHVREQMEIFIQAAKQRGDALDHVLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IV R AK  GL +T E A ++A RSRGTPRI  RLLRRVRDFAEV    
Sbjct: 181 LEFYQVADLEHIVARSAKCLGLELTAEGAHQLARRSRGTPRITNRLLRRVRDFAEVRADG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  ++A  AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 AINGDVAMKALDMLNVDAEGFDFMDRKLLLAVIDKFMGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           +EPY+IQQGFIQRTPRGR+    A++H GI
Sbjct: 301 LEPYLIQQGFIQRTPRGRIATNHAYKHFGI 330


>gi|330811392|ref|YP_004355854.1| Holliday junction ATP-dependent DNA helicase [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327379500|gb|AEA70850.1| Holliday junction ATP-dependent DNA helicase [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 353

 Score =  382 bits (981), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 188/313 (60%), Positives = 239/313 (76%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP +L ++ GQ      +++FI+AA+ R+E+LDH L  GPPGLGKTTLA ++A+E+GV+
Sbjct: 25  IRPVSLADYIGQPTVREQMELFIQAARGRSESLDHTLIFGPPGLGKTTLANIIAQEMGVS 84

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            +STSGPV+ + GDLAALLTNLE  DVLFIDEIHRLS IVEE+LYPAMEDFQLD+M+GEG
Sbjct: 85  IKSTSGPVLERPGDLAALLTNLEPHDVLFIDEIHRLSPIVEEVLYPAMEDFQLDIMIGEG 144

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY   DL TIV R A + GL
Sbjct: 145 PAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQRLEFYNNADLATIVSRSAGILGL 204

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  + A EIA R+RGTPRIA RLLRRVRDFAEV     IT+ IAD AL  L ID+ GFD
Sbjct: 205 PLDPDGAYEIARRARGTPRIANRLLRRVRDFAEVRAKGHITKPIADLALNLLDIDERGFD 264

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             D R L  +   F GGPVG+++++A +SE R  IED++EPY+IQQG+I RTPRGR++  
Sbjct: 265 HQDRRLLLTMIEKFDGGPVGVDSLAAAISEERHTIEDVLEPYLIQQGYIMRTPRGRVVTR 324

Query: 322 IAWQHLGIDIPHR 334
            A+ H G++IP R
Sbjct: 325 HAYLHFGLNIPTR 337


>gi|167035194|ref|YP_001670425.1| Holliday junction DNA helicase RuvB [Pseudomonas putida GB-1]
 gi|189046042|sp|B0KTJ2|RUVB_PSEPG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|166861682|gb|ABZ00090.1| Holliday junction DNA helicase RuvB [Pseudomonas putida GB-1]
          Length = 348

 Score =  382 bits (981), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 185/321 (57%), Positives = 242/321 (75%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           +E+     +RP +L+++ GQ      + +FI+AA+ R+E+LDH L  GPPGLGKTTLA +
Sbjct: 15  REEVQDRAIRPLSLDDYIGQPVVREQMALFIQAARGRSESLDHTLIFGPPGLGKTTLANI 74

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +A E+GV+ +STSGP++ + GDLAA+LTNLE  DVLFIDEIHRLS +VEE+LYPAMEDFQ
Sbjct: 75  IAHEMGVSVKSTSGPILERPGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDFQ 134

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           LD+M+GEGP+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  +DL TIV 
Sbjct: 135 LDIMIGEGPAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQRLEFYSDKDLATIVS 194

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A + GLA+ D  A EIA R+RGTPRIA RLLRRVRD+AEV     IT+ +AD AL  L
Sbjct: 195 RSANILGLAIEDLGAYEIARRARGTPRIANRLLRRVRDYAEVRGKGQITKAVADMALNLL 254

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D+ GFD  D R L  +   F GGPVG++ ++A +SE R  IED++EPY+IQQG+I RT
Sbjct: 255 DVDERGFDHSDRRLLLTMIEKFDGGPVGVDNLAAAISEERHTIEDVLEPYLIQQGYIMRT 314

Query: 314 PRGRLLMPIAWQHLGIDIPHR 334
           PRGR++   A+ H G++IP R
Sbjct: 315 PRGRVVTRHAYLHFGLNIPGR 335


>gi|313894579|ref|ZP_07828142.1| Holliday junction DNA helicase RuvB [Veillonella sp. oral taxon 158
           str. F0412]
 gi|313440769|gb|EFR59198.1| Holliday junction DNA helicase RuvB [Veillonella sp. oral taxon 158
           str. F0412]
          Length = 334

 Score =  382 bits (981), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 191/323 (59%), Positives = 241/323 (74%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L+     +ED     LRP+   E+ GQ EA  NL V+I+AAK R EALDHVL  GPPGLG
Sbjct: 7   LVGNGEHEEDIWQYSLRPKFFNEYVGQEEAKGNLNVYIQAAKQRGEALDHVLLYGPPGLG 66

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTTLA ++A ELGVNFR TSGP I K+GDLAA+LTNL+D DVLFIDEIHRLS  VEE+LY
Sbjct: 67  KTTLAGIIANELGVNFRITSGPAIEKSGDLAAILTNLDDHDVLFIDEIHRLSRSVEEVLY 126

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            AMED+ +D+++G+GPSAR+V+I+L +FTL+ ATTR G L  PL+DRFGI  RL +Y+  
Sbjct: 127 SAMEDYAIDIIIGKGPSARTVRIDLPKFTLVGATTRAGALAAPLRDRFGIINRLEYYKQP 186

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +L+ IV R A++  + +    A EIA RSRGTPRIA RLL+RVRDFA+V     IT++IA
Sbjct: 187 ELEFIVTRAAEILKIGIEPTGASEIARRSRGTPRIANRLLKRVRDFAQVIGDGVITQDIA 246

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           D AL RL IDK G D++D R L  I  N+ GGPVGI+TI+A +SE RD IED+ EPY++Q
Sbjct: 247 DEALQRLYIDKEGLDRIDRRVLECIIGNYDGGPVGIDTIAAAISEERDTIEDVYEPYLMQ 306

Query: 307 QGFIQRTPRGRLLMPIAWQHLGI 329
            GF+ RTPRGR+   +A++HLGI
Sbjct: 307 LGFLGRTPRGRVATKLAYEHLGI 329


>gi|308070379|ref|YP_003871984.1| Holliday junction DNA helicase ruvB [Paenibacillus polymyxa E681]
 gi|305859658|gb|ADM71446.1| Holliday junction DNA helicase ruvB [Paenibacillus polymyxa E681]
          Length = 335

 Score =  382 bits (981), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 195/333 (58%), Positives = 245/333 (73%), Gaps = 3/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M DR  ++S N+  ED    L LRPR L E+ GQ +   NLKV+IEAAK R EALDHVL 
Sbjct: 1   MDDR--IISANLMMEDQTAELSLRPRYLNEYIGQNQVKENLKVYIEAAKMRKEALDHVLL 58

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A ELGVN R+TSGP I + GDLAALLTNL++ DVLFIDEIHRL  
Sbjct: 59  YGPPGLGKTTLANIIANELGVNLRTTSGPAIERPGDLAALLTNLQEGDVLFIDEIHRLHR 118

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEE++YPAMEDF LD+M+G+GPSARSV+++L  FTLI ATTR GLL+ PL+DRFG+  R
Sbjct: 119 TVEEVMYPAMEDFALDIMIGKGPSARSVRLDLPPFTLIGATTRAGLLSAPLRDRFGVISR 178

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY  ++L  IV R A +  + +  +AA EIA+RSRGTPRIA RLL+RVRDFA+VA   
Sbjct: 179 LEFYTTDELAYIVSRNADIMEIEIVGDAAEEIALRSRGTPRIANRLLKRVRDFAQVAGDG 238

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  E+A  AL RL ID +G D++D + L  +  +F GGPVG++TI+A + E    IED+
Sbjct: 239 IIHSELAAEALKRLQIDPLGLDEIDHKMLKAMIHSFRGGPVGLDTIAATIGEESQTIEDV 298

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
            EPY++Q G +QRTPRGR + P A+ HLGI +P
Sbjct: 299 YEPYLLQIGLLQRTPRGRTVTPAAYAHLGILMP 331


>gi|70732088|ref|YP_261844.1| Holliday junction DNA helicase RuvB [Pseudomonas fluorescens Pf-5]
 gi|97190216|sp|Q4K7D9|RUVB_PSEF5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|68346387|gb|AAY93993.1| Holliday junction DNA helicase RuvB [Pseudomonas fluorescens Pf-5]
          Length = 352

 Score =  382 bits (981), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 187/313 (59%), Positives = 237/313 (75%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP +L ++ GQ      +++FI+AA+ R E+LDH L  GPPGLGKTTLA ++A E+GV+
Sbjct: 24  IRPVSLADYIGQPSVREQMELFIQAARGRNESLDHTLIFGPPGLGKTTLANIIAEEMGVS 83

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            +STSGPV+ + GDLAALLTNLE  DVLFIDEIHRLS IVEE+LYPAMEDFQLD+M+GEG
Sbjct: 84  IKSTSGPVLERPGDLAALLTNLEPHDVLFIDEIHRLSPIVEEVLYPAMEDFQLDIMIGEG 143

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY   DL TIV R A + GL
Sbjct: 144 PAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQRLEFYSTADLATIVSRSAGILGL 203

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  E A E+A R+RGTPRIA RLLRRVRDFAEV     IT+ IAD AL  L +D+ GFD
Sbjct: 204 PLDPEGAFEVARRARGTPRIANRLLRRVRDFAEVRAKGHITKPIADLALNLLDVDERGFD 263

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             D R L  +   F GGPVG+++++A +SE R  IED++EPY+IQQG+I RTPRGR++  
Sbjct: 264 HQDRRLLLTMIEKFDGGPVGVDSLAAAISEERHTIEDVLEPYLIQQGYIMRTPRGRVVTR 323

Query: 322 IAWQHLGIDIPHR 334
            A+ H G++IP R
Sbjct: 324 HAYLHFGLNIPSR 336


>gi|261211908|ref|ZP_05926195.1| holliday junction DNA helicase RuvB [Vibrio sp. RC341]
 gi|260839258|gb|EEX65890.1| holliday junction DNA helicase RuvB [Vibrio sp. RC341]
          Length = 334

 Score =  382 bits (981), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 184/309 (59%), Positives = 234/309 (75%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L ++ GQ      +++FI AA+ R EALDH+L  GPPGLGKTTLA +VA E+GVN
Sbjct: 25  IRPKKLADYQGQDHVRDQMEIFIMAAQQRQEALDHLLIFGPPGLGKTTLANIVANEMGVN 84

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS +VEE+LYPAMED+QLD+M+GEG
Sbjct: 85  IRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQLDIMIGEG 144

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  RL +Y + DL+ IVQR A   GL
Sbjct: 145 PAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEYYNVADLQNIVQRSAHCLGL 204

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
           ++  E A E+A R+RGTPRIA RLLRRVRD+AEV     I  E AD AL  L +D  GFD
Sbjct: 205 SMDGEGALEVARRARGTPRIANRLLRRVRDYAEVKGNGHICAETADKALNMLDVDHQGFD 264

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  I   F GGPVG++ +SA + E +D IED++EP++IQQG++QRTPRGR+   
Sbjct: 265 YMDRKLLLAIMEKFSGGPVGLDNLSAAIGEEKDTIEDVLEPFLIQQGYLQRTPRGRIATD 324

Query: 322 IAWQHLGID 330
            A+ H G++
Sbjct: 325 RAYLHFGLE 333


>gi|304413291|ref|ZP_07394764.1| helicase subunit of Holliday junction resolvasome [Candidatus
           Regiella insecticola LSR1]
 gi|304284134|gb|EFL92527.1| helicase subunit of Holliday junction resolvasome [Candidatus
           Regiella insecticola LSR1]
          Length = 334

 Score =  382 bits (981), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 194/330 (58%), Positives = 243/330 (73%), Gaps = 1/330 (0%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S  +  ++  I   +RP+ L E+ GQ+     +++FI+AAK R EALDH+L 
Sbjct: 1   MIEADRLISAQIINDEVIIDRAIRPKLLAEYIGQLPVREQMEIFIQAAKQRGEALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A E+GVN R+TSGPV+ KAGDLAALLTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIIANEMGVNLRTTSGPVLEKAGDLAALLTNLESHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           ++EEILYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VIEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY+I DL+ IV R A+  GL +T E A  +A  SRGTPRI  RLLRRVRDFAEV    
Sbjct: 181 LEFYQIADLEQIVARSARCLGLTLTLEGAHHLARCSRGTPRITNRLLRRVRDFAEVKAQG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I   IA  AL  L ID  GFD +D + L  I   F GGPVG++ I+A + E R+ IED+
Sbjct: 241 VIDGPIAIKALEMLNIDGEGFDYMDRKLLLAIIDKFNGGPVGLDNIAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           +EPY+IQQGFIQRTPRGR+    A+QH GI
Sbjct: 301 LEPYLIQQGFIQRTPRGRIATQHAYQHCGI 330


>gi|50121416|ref|YP_050583.1| Holliday junction DNA helicase RuvB [Pectobacterium atrosepticum
           SCRI1043]
 gi|68715450|sp|Q6D4A2|RUVB_ERWCT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|49611942|emb|CAG75391.1| holliday junction DNA helicase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 334

 Score =  382 bits (981), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 189/330 (57%), Positives = 249/330 (75%), Gaps = 1/330 (0%)

Query: 1   MMDREGLLSRN-VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S + V +E+     +RP+ L+E+ GQ +    +++FI+AA+ R +ALDH+L 
Sbjct: 1   MIEADRLISADAVPEEEFLDRAMRPKLLKEYVGQPQVREQMEIFIQAARKRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAALLTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNMRTTSGPVLEKAGDLAALLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY + DL+ IV R A+  GL +T E + E+A R+RGTPRIA RLLRRVRDF+EV    
Sbjct: 181 LEFYNVADLQYIVGRSAQCLGLDLTQEGSLEVARRARGTPRIANRLLRRVRDFSEVKSEG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT  +A  AL  LA+D  GFD +D + L  I   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 AITGTVATQALDMLAVDTEGFDYMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           +EP++IQQGFIQRTPRGR+    A++H G+
Sbjct: 301 LEPFLIQQGFIQRTPRGRMATQHAYRHFGL 330


>gi|329893680|ref|ZP_08269814.1| Holliday junction DNA helicase RuvB [gamma proteobacterium
           IMCC3088]
 gi|328923607|gb|EGG30919.1| Holliday junction DNA helicase RuvB [gamma proteobacterium
           IMCC3088]
          Length = 350

 Score =  382 bits (981), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 183/310 (59%), Positives = 235/310 (75%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP++L ++ GQ      + +F+ AAK R E LDH L  GPPGLGKTTLA ++A E+GV+
Sbjct: 24  IRPKSLADYIGQSAVKEQMDIFLSAAKGRGEPLDHTLIFGPPGLGKTTLASIIANEMGVS 83

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            ++TSGPV+ KAGD+AAL+TNLE  DVLFIDEIHRLS  VEE+LYPAMED+QLD+M+GEG
Sbjct: 84  LKTTSGPVLDKAGDIAALMTNLEPGDVLFIDEIHRLSPFVEEVLYPAMEDYQLDIMIGEG 143

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+K++L  FTL+ ATTR GLLT+PL+DRFGI  RL FY + DL TIV R AK+ G+
Sbjct: 144 PAARSIKLDLPPFTLVGATTRAGLLTSPLRDRFGIVQRLEFYNVADLATIVARSAKIMGV 203

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + +  A E+A RSRGTPRIA RLLRRVRDFAEV     +T+ IAD AL  L +D  GFD
Sbjct: 204 DMEEGGAVEVARRSRGTPRIANRLLRRVRDFAEVKGDGIVTQTIADRALDMLNVDVQGFD 263

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            LD R L  +   F GGPVG+E+++A +SE R  IED+IEPY+IQQG++ RTPRGR++  
Sbjct: 264 HLDRRLLLAMIEKFDGGPVGVESLAAAISEERGTIEDVIEPYLIQQGYMMRTPRGRMVTR 323

Query: 322 IAWQHLGIDI 331
            A+ H G+D+
Sbjct: 324 NAYLHFGLDV 333


>gi|117617467|ref|YP_858103.1| Holliday junction DNA helicase RuvB [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|166231459|sp|A0KPA2|RUVB_AERHH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|117558874|gb|ABK35822.1| Holliday junction DNA helicase RuvB [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 336

 Score =  382 bits (980), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 189/333 (56%), Positives = 248/333 (74%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S +  +E+  I   +RP+ L ++TGQ   C  +++FI AA+ R EALDH+L 
Sbjct: 1   MIEADRLISASGGREEEVIDRAIRPKLLADYTGQDPVCEQMEIFIAAARQRGEALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN ++TSGPV+ KAGDLAALLTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNIKTTSGPVLEKAGDLAALLTNLEPNDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY ++DL  IV R A+  GL +T++ A E+A RSRGTPRIA RLLRRVRDFA+V    
Sbjct: 181 LEFYNVKDLTDIVARSARCLGLDMTEDGALEVARRSRGTPRIANRLLRRVRDFAQVKSDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I   IA  A+  L +D  GFD +D + L  +   F GGPVG++ ++A + E +D IED+
Sbjct: 241 RIDGPIAARAMDMLDVDNEGFDFMDRKLLLAVIDKFLGGPVGLDNLAAAIGEEKDTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           +EPY+IQQG++QRTPRGR+  P A+ H G+  P
Sbjct: 301 LEPYLIQQGYLQRTPRGRIATPRAYAHFGLQRP 333


>gi|146329062|ref|YP_001210060.1| Holliday junction DNA helicase RuvB [Dichelobacter nodosus
           VCS1703A]
 gi|166231489|sp|A5EXH6|RUVB_DICNV RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|146232532|gb|ABQ13510.1| holliday junction DNA helicase RuvB [Dichelobacter nodosus
           VCS1703A]
          Length = 338

 Score =  382 bits (980), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 193/333 (57%), Positives = 244/333 (73%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S     E+  I   +RP+ L ++ GQ    + L +FIEAA  R EALDHVL 
Sbjct: 1   MIESDRLVSGKARSEEQVIERAVRPKRLTDYVGQESLKAQLSIFIEAALKRQEALDHVLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A ELGV  R TSGP++ KAGDLAALLTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLAAIIAFELGVGLRQTSGPILDKAGDLAALLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEE+LYPAMED+Q+D+M+GEGP+ARS+K++L  FTLI ATTR GLLT PL+DRFGI   
Sbjct: 121 AVEEVLYPAMEDYQIDIMIGEGPAARSIKLDLPPFTLIGATTRSGLLTAPLRDRFGISHH 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y  ++L  IV R AKL  +A+  E A EI  RSRGTPRIA RLLRRVRD+A+V    
Sbjct: 181 LQYYHHDELTQIVMRSAKLFEVAIDKEGAEEIGRRSRGTPRIANRLLRRVRDYAQVRGDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT+ +AD AL  LA+D +GFD LD R L  +   FGGGP GI+T++  + E R  +ED+
Sbjct: 241 MITKALADEALELLAVDHLGFDALDRRMLLCLVEYFGGGPTGIDTLAVSVGEERGTLEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           +EPY+IQQGFIQRTPRGR+   +A+Q+L I++P
Sbjct: 301 VEPYLIQQGFIQRTPRGRVATELAYQYLNIEVP 333


>gi|261821380|ref|YP_003259486.1| Holliday junction DNA helicase RuvB [Pectobacterium wasabiae
           WPP163]
 gi|261605393|gb|ACX87879.1| Holliday junction DNA helicase RuvB [Pectobacterium wasabiae
           WPP163]
          Length = 334

 Score =  382 bits (980), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 184/308 (59%), Positives = 238/308 (77%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L+E+ GQ +    +++FI+AA+ R +ALDH+L  GPPGLGKTTLA +VA E+GVN
Sbjct: 23  MRPKLLKEYVGQPQVREQMEIFIQAARKRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R+TSGPV+ KAGDLAALLTNLE  DVLFIDEIHRLS +VEE+LYPAMED+QLD+M+GEG
Sbjct: 83  MRTTSGPVLEKAGDLAALLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEG 142

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  RL FY + DL+ IV R A+  GL
Sbjct: 143 PAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYNVADLQYIVGRSAQCLGL 202

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T E + E+A R+RGTPRIA RLLRRVRDF+EV     IT ++A  AL  LA+D  GFD
Sbjct: 203 DLTPEGSLEVARRARGTPRIANRLLRRVRDFSEVKSEGAITGDVATQALDMLAVDTEGFD 262

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  I   F GGPVG++ ++A + E R+ IED++EP++IQQGFIQRTPRGR+   
Sbjct: 263 YMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETIEDVLEPFLIQQGFIQRTPRGRMATQ 322

Query: 322 IAWQHLGI 329
            A++H G+
Sbjct: 323 HAYRHFGL 330


>gi|170723159|ref|YP_001750847.1| Holliday junction DNA helicase RuvB [Pseudomonas putida W619]
 gi|229890173|sp|B1JD70|RUVB_PSEPW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|169761162|gb|ACA74478.1| Holliday junction DNA helicase RuvB [Pseudomonas putida W619]
          Length = 348

 Score =  382 bits (980), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 184/321 (57%), Positives = 241/321 (75%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           +E+     +RP  L+E+ GQ      + +FI+AA+ R E+LDH L  GPPGLGKTTLA +
Sbjct: 15  REEVQDRAIRPLRLDEYIGQPVVREQMALFIQAARGRNESLDHTLIFGPPGLGKTTLANI 74

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +A+E+GV+ +STSGP++ + GDLAA+LTNLE  DVLFIDEIHRLS +VEE+LYPAMEDFQ
Sbjct: 75  IAQEMGVSVKSTSGPILERPGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDFQ 134

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           LD+M+GEGP+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  +DL TIV 
Sbjct: 135 LDIMIGEGPAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQRLEFYSDKDLATIVS 194

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A + GL + D+ A EIA R+RGTPRIA RLLRRVRD+AEV     IT+ +AD AL  L
Sbjct: 195 RSANILGLVIEDQGAYEIARRARGTPRIANRLLRRVRDYAEVRGKGQITKAVADLALNLL 254

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D+ GFD  D R L  +   F GGPVG++ ++A +SE R  IED++EPY+IQQG+I RT
Sbjct: 255 DVDERGFDHSDRRLLLTMIEKFDGGPVGVDNLAAAISEERHTIEDVLEPYLIQQGYIMRT 314

Query: 314 PRGRLLMPIAWQHLGIDIPHR 334
           PRGR++   A+ H G+++P R
Sbjct: 315 PRGRVVTRHAYLHFGLNVPGR 335


>gi|162421002|ref|YP_001606842.1| Holliday junction DNA helicase RuvB [Yersinia pestis Angola]
 gi|238687247|sp|A9QYX2|RUVB_YERPG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|162353817|gb|ABX87765.1| Holliday junction DNA helicase RuvB [Yersinia pestis Angola]
          Length = 334

 Score =  382 bits (980), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 192/330 (58%), Positives = 244/330 (73%), Gaps = 1/330 (0%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S  V  ++  I   +RP+ L E+ GQ      +++FI+AAK R +ALDHVL 
Sbjct: 1   MIEADRLISAAVINDEESIDRAIRPKLLTEYVGQPHVREQMEIFIQAAKQRGDALDHVLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIIANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY + DL+ IV R AK  GL +T E A ++A RSRGTPRI  RLLRRVRDFAEV    
Sbjct: 181 LEFYPVADLEHIVSRSAKCLGLELTPEGAHQLARRSRGTPRITNRLLRRVRDFAEVRADG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  E+A  AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 AINGEVAMKALDMLNVDAEGFDFMDRKLLLAVIDKFMGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           +EPY+IQQGFIQRTPRGR+    A++H GI
Sbjct: 301 LEPYLIQQGFIQRTPRGRIATNHAYKHFGI 330


>gi|307245099|ref|ZP_07527192.1| Holliday junction ATP-dependent DNA helicase ruvB [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307254054|ref|ZP_07535901.1| Holliday junction ATP-dependent DNA helicase ruvB [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307258510|ref|ZP_07540247.1| Holliday junction ATP-dependent DNA helicase ruvB [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306853988|gb|EFM86200.1| Holliday junction ATP-dependent DNA helicase ruvB [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306862979|gb|EFM94926.1| Holliday junction ATP-dependent DNA helicase ruvB [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306867414|gb|EFM99265.1| Holliday junction ATP-dependent DNA helicase ruvB [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
          Length = 334

 Score =  382 bits (980), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 187/330 (56%), Positives = 247/330 (74%), Gaps = 1/330 (0%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + ++S +  +E+  I   +RP+ L ++ GQ      +++FI+AAK R EALDH+L 
Sbjct: 1   MIEADRIISASPKREEEVIDRAIRPKLLADYVGQPSVREQMEIFIKAAKLRDEALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPYDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            +EE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ ATTR G LT+PL+DRFGI  R
Sbjct: 121 AIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY ++DL +IV+R A    L ++  AA E+A RSRGTPRIA RLLRRVRD+A+V +  
Sbjct: 181 LEFYSVDDLTSIVKRSADCLNLNLSPNAAYEVARRSRGTPRIANRLLRRVRDYADVRNNG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT +IA  AL  L +D  GFD +D++ L  I   F GGPVG++ ++A + E RD IED+
Sbjct: 241 VITSDIAKQALAMLDVDSEGFDFMDIKLLQAIVERFDGGPVGLDNLAAAIGEERDTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           +EPY+IQQGF+QRTPRGR+     + HLGI
Sbjct: 301 LEPYLIQQGFLQRTPRGRIATSRTYAHLGI 330


>gi|238754861|ref|ZP_04616211.1| Holliday junction DNA helicase RuvB [Yersinia ruckeri ATCC 29473]
 gi|238706872|gb|EEP99239.1| Holliday junction DNA helicase RuvB [Yersinia ruckeri ATCC 29473]
          Length = 334

 Score =  381 bits (979), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 191/331 (57%), Positives = 245/331 (74%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S  V  E+  I   +RP+ L E+ GQ      +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRLISAGVISEEEIIDRAIRPKRLSEYVGQPHVREQMEIFIQAAKQRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY + DL+ IV R A+  GL +T E A ++A RSRGTPRI  RLLRRVRDFAEV    
Sbjct: 181 LEFYPVADLEHIVARSAQCLGLELTQEGAHQLARRSRGTPRITNRLLRRVRDFAEVKADG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  ++A  AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 AINGDVAMKALDMLNVDAEGFDYMDRKLLLAVIDKFMGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           +EPY+IQQGFIQRTPRGR+    A++H GI+
Sbjct: 301 LEPYLIQQGFIQRTPRGRIATHHAYKHFGIE 331


>gi|317402222|gb|EFV82811.1| Holliday junction ATP-dependent DNA helicase ruvB [Achromobacter
           xylosoxidans C54]
          Length = 357

 Score =  381 bits (979), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 185/311 (59%), Positives = 229/311 (73%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ LEE+ GQ  A   L++FI AA+ R EALDHVL  GPPGLGKTTLA ++A E+GV 
Sbjct: 34  LRPKALEEYVGQQRAREQLEIFIAAARKRGEALDHVLLFGPPGLGKTTLAHIIAHEMGVQ 93

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGPV+ + GDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+EDFQ+D+++GEG
Sbjct: 94  LRQTSGPVLERPGDLAALLTNLEKNDVLFIDEIHRLSPVVEEILYPALEDFQIDILIGEG 153

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY   DL  IV R A L   
Sbjct: 154 PAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYNAGDLGRIVTRSAGLLNA 213

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T + A E+A R+RGTPRIA RLLRRVRD+AEV    TI  ++A  AL  L +D  G D
Sbjct: 214 VITPDGAAEVARRARGTPRIANRLLRRVRDYAEVKAGGTIDADVAGRALAMLEVDPQGLD 273

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  I   F GGPVG+++++A + E RD IED+IEPY+IQ G++QRTPRGR    
Sbjct: 274 LMDRKLLEAIIHKFDGGPVGVDSLAAAIGEERDTIEDVIEPYLIQHGYLQRTPRGRTATL 333

Query: 322 IAWQHLGIDIP 332
             W+HLG+  P
Sbjct: 334 TTWRHLGLTPP 344


>gi|260768874|ref|ZP_05877808.1| holliday junction DNA helicase RuvB [Vibrio furnissii CIP 102972]
 gi|260616904|gb|EEX42089.1| holliday junction DNA helicase RuvB [Vibrio furnissii CIP 102972]
 gi|315180568|gb|ADT87482.1| Holliday junction DNA helicase B [Vibrio furnissii NCTC 11218]
          Length = 334

 Score =  381 bits (979), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 184/309 (59%), Positives = 238/309 (77%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L ++ GQ      +++FI+AA+ R+EALDH+L  GPPGLGKTTLA +VA E+ V+
Sbjct: 25  IRPKKLADYRGQDHVRDQMEIFIQAAQKRSEALDHLLIFGPPGLGKTTLANIVANEMEVS 84

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS +VEE+LYPAMED+QLD+M+GEG
Sbjct: 85  IRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQLDIMIGEG 144

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  RL +Y++ DL+ IVQR A   GL
Sbjct: 145 PAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEYYKVADLQHIVQRSADCLGL 204

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
           ++  E A E+A R+RGTPRIA RLLRRVRDFAEV     I  +IAD AL  L +D  GFD
Sbjct: 205 SMDAEGALEVARRARGTPRIANRLLRRVRDFAEVKGNGHICADIADKALNMLDVDHQGFD 264

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  I   FGGGPVG++ ++A + E +D IED+IEP++IQQG++QRTPRGR+   
Sbjct: 265 YMDRKLLLAIMEKFGGGPVGLDNLAAAIGEEKDTIEDVIEPFLIQQGYLQRTPRGRIATD 324

Query: 322 IAWQHLGID 330
            A+ H G++
Sbjct: 325 RAYLHFGLE 333


>gi|270262222|ref|ZP_06190494.1| holliday junction ATP-dependent DNA helicase RuvB [Serratia
           odorifera 4Rx13]
 gi|270044098|gb|EFA17190.1| holliday junction ATP-dependent DNA helicase RuvB [Serratia
           odorifera 4Rx13]
          Length = 334

 Score =  381 bits (979), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 184/308 (59%), Positives = 235/308 (76%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L E+ GQ      +++FI+AAK R +ALDH+L  GPPGLGKTTLA +VA E+GVN
Sbjct: 23  IRPKLLTEYVGQPHVREQMEIFIQAAKQRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS +VEE+LYPAMED+QLD+M+GEG
Sbjct: 83  LRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEG 142

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+K++L  FTL+ ATTR G LT+PL+DRFGI  RL FY++ DL+ IV R A   GL
Sbjct: 143 PAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQRLEFYQVADLQHIVSRSANCLGL 202

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +++E A ++A R+RGTPRIA RLLRRVRDFAEV     I  E+A  AL  L +D  GFD
Sbjct: 203 DLSEEGAHQVARRARGTPRIANRLLRRVRDFAEVRANGVINGEVAMQALDMLNVDAEGFD 262

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  I   F GGPVG++ ++A + E R+ IED+IEP++IQQGFIQRTPRGR+   
Sbjct: 263 YMDRKLLLAIIDKFAGGPVGLDNLAAAIGEERETIEDVIEPFLIQQGFIQRTPRGRMATN 322

Query: 322 IAWQHLGI 329
            A++H GI
Sbjct: 323 HAYKHFGI 330


>gi|94501015|ref|ZP_01307539.1| Holliday junction DNA helicase RuvB [Oceanobacter sp. RED65]
 gi|94426762|gb|EAT11746.1| Holliday junction DNA helicase RuvB [Oceanobacter sp. RED65]
          Length = 338

 Score =  381 bits (979), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 184/309 (59%), Positives = 236/309 (76%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  L ++ GQ +    +++FI AA+AR EALDH L  GPPGLGKTTLA ++A EL VN
Sbjct: 26  IRPTRLADYEGQPQVREQMEIFIGAARARQEALDHSLIFGPPGLGKTTLANIIAHELDVN 85

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            +STSGPV+ KAGDLAA+LTNLE+ DVLFIDEIHRL+  VEE+LYPAMED+QLD+MVGEG
Sbjct: 86  IKSTSGPVLEKAGDLAAMLTNLEEGDVLFIDEIHRLNPSVEEVLYPAMEDYQLDIMVGEG 145

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+KI+L  FTL+ ATTR GLLT+PL+DRFGI  RL FY + DL  IV R A + G+
Sbjct: 146 PAARSIKIDLPPFTLVGATTRAGLLTSPLRDRFGIVQRLEFYNVADLTGIVTRSAGMLGV 205

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  + A EIA RSRGTPRIA RLL+RVRD+A+V    T+T+ IAD AL  L +D  G D
Sbjct: 206 EIDHKGAGEIAQRSRGTPRIANRLLKRVRDYAQVKGDGTVTQNIADLALNMLHVDTHGLD 265

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D R L  +   FGGGPVG+++++A +SE RD IED++EPY+IQQGF+ RTPRGR++  
Sbjct: 266 HMDRRLLLAMIEKFGGGPVGVDSLAAAISEERDTIEDVLEPYLIQQGFMMRTPRGRMVTE 325

Query: 322 IAWQHLGID 330
            A+ H G++
Sbjct: 326 NAYLHFGLE 334


>gi|167855147|ref|ZP_02477918.1| Holliday junction DNA helicase RuvB [Haemophilus parasuis 29755]
 gi|167853692|gb|EDS24935.1| Holliday junction DNA helicase RuvB [Haemophilus parasuis 29755]
          Length = 334

 Score =  381 bits (979), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 185/330 (56%), Positives = 245/330 (74%), Gaps = 1/330 (0%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + ++S +  +ED  I   +RP+ L ++ GQ      +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRIISASAKKEDETIDRAIRPKMLADYVGQPSVREQMEIFIKAAKLRNDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIIANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPYDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            +EE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ ATTR G LT+PL+DRFGI  R
Sbjct: 121 AIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY +EDL +IV R A    L +   AA EIA RSRGTPRIA RLLRRVRDFA+V +  
Sbjct: 181 LEFYSVEDLTSIVSRSASCLNLNLATNAAYEIARRSRGTPRIANRLLRRVRDFADVRNNG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I+ +IA  AL  L +D  GFD +D + L+ +   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 IISSDIAKQALTMLDVDSEGFDFMDRKLLSAVIERFDGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           +EPY+IQQGF+QRTPRGR+     + HLG+
Sbjct: 301 LEPYLIQQGFLQRTPRGRIATSRTYSHLGL 330


>gi|171319638|ref|ZP_02908732.1| Holliday junction DNA helicase RuvB [Burkholderia ambifaria MEX-5]
 gi|171095129|gb|EDT40135.1| Holliday junction DNA helicase RuvB [Burkholderia ambifaria MEX-5]
          Length = 355

 Score =  381 bits (979), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 193/320 (60%), Positives = 240/320 (75%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           S E+     LRPR L+++ GQ +    L++FIEAAK R+E LDHVL  GPPGLGKTTLA 
Sbjct: 20  SHEEVFERALRPRQLDDYVGQEKVRGQLEIFIEAAKRRSEPLDHVLLFGPPGLGKTTLAH 79

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++ARE+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+
Sbjct: 80  IIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDY 139

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           Q+D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY+ + L  IV
Sbjct: 140 QIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYDADQLARIV 199

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           +R A L    +    A EIA RSRGTPRIA RLLRRVRDFAEV     IT  +ADAAL  
Sbjct: 200 RRSASLLNAHIDPSGALEIAKRSRGTPRIANRLLRRVRDFAEVKADGQITAAVADAALAM 259

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D +GFD +D + L  I   F GGPVGI+ ++A + E RD IED++EPY+IQQGF+QR
Sbjct: 260 LDVDPVGFDLMDRKLLEAILHKFDGGPVGIDNLAAAIGEERDTIEDVLEPYLIQQGFLQR 319

Query: 313 TPRGRLLMPIAWQHLGIDIP 332
           TPRGR+   + ++H G+  P
Sbjct: 320 TPRGRVATLLTYRHFGLSAP 339


>gi|258626837|ref|ZP_05721644.1| Holliday junction DNA helicase RuvB [Vibrio mimicus VM603]
 gi|262165954|ref|ZP_06033691.1| holliday junction DNA helicase RuvB [Vibrio mimicus VM223]
 gi|258580884|gb|EEW05826.1| Holliday junction DNA helicase RuvB [Vibrio mimicus VM603]
 gi|262025670|gb|EEY44338.1| holliday junction DNA helicase RuvB [Vibrio mimicus VM223]
          Length = 334

 Score =  381 bits (979), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 182/309 (58%), Positives = 235/309 (76%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L ++ GQ      +++FI+AA+ R EALDH+L  GPPGLGKTTLA +VA E+GVN
Sbjct: 25  IRPKKLADYQGQDHVRDQMEIFIKAAQQRQEALDHLLIFGPPGLGKTTLANIVANEMGVN 84

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS +VEE+LYPAMED+QLD+M+GEG
Sbjct: 85  IRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQLDIMIGEG 144

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  RL +Y + DL+ IVQR A   GL
Sbjct: 145 PAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEYYNVADLQNIVQRSAHCLGL 204

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
           ++  E A E+A R+RGTPRIA RLLRRVRD+AEV     I  + AD AL  L +D  GFD
Sbjct: 205 SMDSEGALEVARRARGTPRIANRLLRRVRDYAEVKGDGHICAQTADKALNMLDVDHQGFD 264

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  I   F GGPVG++ ++A + E +D IED++EP++IQQG++QRTPRGR+   
Sbjct: 265 YMDRKLLLAIMEKFSGGPVGLDNLAAAIGEEKDTIEDVLEPFLIQQGYLQRTPRGRIATD 324

Query: 322 IAWQHLGID 330
            A+ H G++
Sbjct: 325 RAYLHFGLE 333


>gi|88705606|ref|ZP_01103316.1| Holliday junction DNA helicase ruvB [Congregibacter litoralis KT71]
 gi|88700119|gb|EAQ97228.1| Holliday junction DNA helicase ruvB [Congregibacter litoralis KT71]
          Length = 356

 Score =  381 bits (979), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 185/318 (58%), Positives = 242/318 (76%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           EDA    +RP++L E+ GQ  A   +++F+ AAK R E LDH L  GPPGLGKTTLA ++
Sbjct: 17  EDAQDRAVRPKSLGEYIGQPVAREQMEIFLAAAKGREEPLDHTLIFGPPGLGKTTLASII 76

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A E+GV+ ++TSGPV+ KAGD+AAL+TNLE  DVLFIDEIHRLS  VEEILYPAMED+QL
Sbjct: 77  ANEMGVSLKTTSGPVLEKAGDIAALMTNLEPGDVLFIDEIHRLSPFVEEILYPAMEDYQL 136

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D+M+GEGP+ARS+K++L  FTL+ ATTR GLLT+PL+DRFGI  RL FY +EDL  IV R
Sbjct: 137 DIMIGEGPAARSIKLDLPPFTLVGATTRAGLLTSPLRDRFGIVQRLEFYGVEDLAVIVAR 196

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A++  + + D+ A EIA RSRGTPRIA RLLRRVRD+AEV     +  +IAD AL  L+
Sbjct: 197 SARILEIPMDDDGAREIARRSRGTPRIANRLLRRVRDYAEVKGDGMVNADIADRALDLLS 256

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D  GFD LD R L  +   F GGPVG+++++A +SE R  IED++EP++IQQG++ RTP
Sbjct: 257 VDAKGFDHLDRRLLLAMIEKFDGGPVGVDSLAAAISEERGTIEDVLEPFLIQQGYMIRTP 316

Query: 315 RGRLLMPIAWQHLGIDIP 332
           RGR++  +A+QH G+ +P
Sbjct: 317 RGRMVTRLAYQHFGVPMP 334


>gi|115350635|ref|YP_772474.1| Holliday junction DNA helicase RuvB [Burkholderia ambifaria AMMD]
 gi|122324005|sp|Q0BI83|RUVB_BURCM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|115280623|gb|ABI86140.1| Holliday junction DNA helicase RuvB [Burkholderia ambifaria AMMD]
          Length = 355

 Score =  381 bits (979), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 193/320 (60%), Positives = 240/320 (75%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           S E+     LRPR L+++ GQ +    L++FIEAAK R+E LDHVL  GPPGLGKTTLA 
Sbjct: 20  SHEEVFERALRPRQLDDYVGQEKVRGQLEIFIEAAKRRSEPLDHVLLFGPPGLGKTTLAH 79

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++ARE+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+
Sbjct: 80  IIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDY 139

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           Q+D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY+ + L  IV
Sbjct: 140 QIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYDADQLARIV 199

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           +R A L    +    A EIA RSRGTPRIA RLLRRVRDFAEV     IT  +ADAAL  
Sbjct: 200 RRSASLLNAHIDPSGALEIAKRSRGTPRIANRLLRRVRDFAEVKADGQITAAVADAALAM 259

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D +GFD +D + L  I   F GGPVGI+ ++A + E RD IED++EPY+IQQGF+QR
Sbjct: 260 LDVDPVGFDLMDRKLLEAILHKFDGGPVGIDNLAAAIGEERDTIEDVLEPYLIQQGFLQR 319

Query: 313 TPRGRLLMPIAWQHLGIDIP 332
           TPRGR+   + ++H G+  P
Sbjct: 320 TPRGRVATLLTYRHFGLSAP 339


>gi|319795911|ref|YP_004157551.1| holliday junction DNA helicase ruvb [Variovorax paradoxus EPS]
 gi|315598374|gb|ADU39440.1| Holliday junction DNA helicase RuvB [Variovorax paradoxus EPS]
          Length = 354

 Score =  381 bits (979), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 188/319 (58%), Positives = 235/319 (73%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
            E+A    LRP+ L+E+ GQ +    L++FI AA+ R EALDHVL  GPPGLGKTTL+ +
Sbjct: 24  NEEAIERALRPKLLDEYVGQAKVREQLEIFIGAARKRKEALDHVLLFGPPGLGKTTLSHI 83

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +A ELGVN R TSGPV+ K  DLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+Q
Sbjct: 84  IAAELGVNLRQTSGPVLEKPKDLAALLTNLEPNDVLFIDEIHRLSPVVEEILYPALEDYQ 143

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           +D+M+GEGP+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  E+L  IV 
Sbjct: 144 IDIMIGEGPAARSIKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTPEELALIVT 203

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A+L  +   D    EIA RSRGTPRIA RLLRRVRD+AEV     IT +IA  AL  L
Sbjct: 204 RSARLLKVETDDTGGFEIARRSRGTPRIANRLLRRVRDYAEVKGNGRITEDIAHKALAML 263

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D  GFD +D + L  +   F GGPVG++ ++A + E RD IED+IEPY+IQQG++QRT
Sbjct: 264 DVDPQGFDLMDRKLLEAVIHRFDGGPVGLDNVAASIGEERDTIEDVIEPYLIQQGYLQRT 323

Query: 314 PRGRLLMPIAWQHLGIDIP 332
           PRGR+    A++HLG+  P
Sbjct: 324 PRGRIATLAAYRHLGVTPP 342


>gi|238792584|ref|ZP_04636217.1| Holliday junction DNA helicase RuvB [Yersinia intermedia ATCC
           29909]
 gi|238728219|gb|EEQ19740.1| Holliday junction DNA helicase RuvB [Yersinia intermedia ATCC
           29909]
          Length = 334

 Score =  381 bits (979), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 191/330 (57%), Positives = 246/330 (74%), Gaps = 1/330 (0%)

Query: 1   MMDREGLLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S  + S E++    +RP+ L E+ GQ      +++FI+AAK R +ALDHVL 
Sbjct: 1   MIEADRLISAGIISDEESIDRAIRPKLLAEYVGQPHVREQMEIFIQAAKQRGDALDHVLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IV R A+  GL +T E A ++A RSRGTPRI  RLLRRVRDFAEV    
Sbjct: 181 LEFYQVADLEHIVARSARCMGLELTPEGAHQLARRSRGTPRITNRLLRRVRDFAEVRADG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  ++A  AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 AINGDVAMKALDMLNVDAEGFDFMDRKLLLAVIDKFMGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           +EPY+IQQGFIQRTPRGR+    A++H GI
Sbjct: 301 LEPYLIQQGFIQRTPRGRIATNHAYKHFGI 330


>gi|262404189|ref|ZP_06080744.1| holliday junction DNA helicase RuvB [Vibrio sp. RC586]
 gi|262349221|gb|EEY98359.1| holliday junction DNA helicase RuvB [Vibrio sp. RC586]
          Length = 334

 Score =  381 bits (979), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 182/309 (58%), Positives = 235/309 (76%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L ++ GQ      +++FI+AA+ R EALDH+L  GPPGLGKTTLA +VA E+GVN
Sbjct: 25  IRPKKLADYQGQDHVRDQMEIFIKAAQQREEALDHLLIFGPPGLGKTTLANIVANEMGVN 84

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS +VEE+LYPAMED+QLD+M+GEG
Sbjct: 85  IRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQLDIMIGEG 144

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  RL +Y + DL+ IVQR A   GL
Sbjct: 145 PAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEYYNVADLQNIVQRSAHCLGL 204

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
           ++  E A E+A R+RGTPRIA RLLRRVRD+AEV     I  + AD AL  L +D  GFD
Sbjct: 205 SMDSEGALEVARRARGTPRIANRLLRRVRDYAEVKGDGHICAQTADKALNMLDVDHQGFD 264

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  I   F GGPVG++ ++A + E +D IED++EP++IQQG++QRTPRGR+   
Sbjct: 265 YMDRKLLLAIMEKFSGGPVGLDNLAAAIGEEKDTIEDVLEPFLIQQGYLQRTPRGRIATD 324

Query: 322 IAWQHLGID 330
            A+ H G++
Sbjct: 325 RAYLHFGLE 333


>gi|170699605|ref|ZP_02890644.1| Holliday junction DNA helicase RuvB [Burkholderia ambifaria
           IOP40-10]
 gi|170135487|gb|EDT03776.1| Holliday junction DNA helicase RuvB [Burkholderia ambifaria
           IOP40-10]
          Length = 354

 Score =  381 bits (978), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 193/320 (60%), Positives = 240/320 (75%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           S E+     LRPR L+++ GQ +    L++FIEAAK R+E LDHVL  GPPGLGKTTLA 
Sbjct: 20  SHEEVFERALRPRQLDDYVGQEKVRGQLEIFIEAAKRRSEPLDHVLLFGPPGLGKTTLAH 79

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++ARE+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+
Sbjct: 80  IIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDY 139

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           Q+D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY+ + L  IV
Sbjct: 140 QIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYDADQLARIV 199

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           +R A L    +    A EIA RSRGTPRIA RLLRRVRDFAEV     IT  +ADAAL  
Sbjct: 200 RRSASLLNAHIDPNGALEIAKRSRGTPRIANRLLRRVRDFAEVKADGQITAAVADAALAM 259

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D +GFD +D + L  I   F GGPVGI+ ++A + E RD IED++EPY+IQQGF+QR
Sbjct: 260 LDVDPVGFDLMDRKLLEAILHKFDGGPVGIDNLAAAIGEERDTIEDVLEPYLIQQGFLQR 319

Query: 313 TPRGRLLMPIAWQHLGIDIP 332
           TPRGR+   + ++H G+  P
Sbjct: 320 TPRGRVATLLTYRHFGLSAP 339


>gi|319761304|ref|YP_004125241.1| holliday junction DNA helicase ruvb [Alicycliphilus denitrificans
           BC]
 gi|317115865|gb|ADU98353.1| Holliday junction DNA helicase RuvB [Alicycliphilus denitrificans
           BC]
          Length = 357

 Score =  381 bits (978), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 188/320 (58%), Positives = 237/320 (74%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
            QE+A    LRP+ L+E+ GQ +A   L++FI AA+ R+EALDHVL  GPPGLGKTTL+ 
Sbjct: 29  QQEEALERALRPKLLQEYVGQAKAREQLEIFIGAARKRSEALDHVLLFGPPGLGKTTLSH 88

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++A ELGVN R TSGPV+ K  DLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+
Sbjct: 89  IIAAELGVNLRQTSGPVLEKPKDLAALLTNLERNDVLFIDEIHRLSPVVEEILYPALEDY 148

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           Q+D+M+GEGP+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  E+L  IV
Sbjct: 149 QIDIMIGEGPAARSIKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTPEELALIV 208

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R A L G  + D    EIA RSRGTPRIA RLLRRVRD+A+V     IT ++A+ AL  
Sbjct: 209 MRSASLLGTPIDDAGGAEIARRSRGTPRIANRLLRRVRDYADVKGTGRITLDMANRALTL 268

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D  GFD +D + L  +   F GGPVG++ I+A + E    IED+IEPY+IQQG++QR
Sbjct: 269 LDVDPQGFDVMDRKLLEAVVHRFDGGPVGLDNIAASIGEESGTIEDVIEPYLIQQGYLQR 328

Query: 313 TPRGRLLMPIAWQHLGIDIP 332
           TPRGR+    A++HLG+  P
Sbjct: 329 TPRGRVATLAAYRHLGVAPP 348


>gi|225023913|ref|ZP_03713105.1| hypothetical protein EIKCOROL_00779 [Eikenella corrodens ATCC
           23834]
 gi|224943387|gb|EEG24596.1| hypothetical protein EIKCOROL_00779 [Eikenella corrodens ATCC
           23834]
          Length = 343

 Score =  381 bits (978), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 192/317 (60%), Positives = 236/317 (74%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           SQE+     LRP+TL ++ GQ +    L +FI+AAK R EALDH L  GPPGLGKTTLA 
Sbjct: 23  SQEEQLERALRPKTLADYIGQAKTKEQLGIFIQAAKKRGEALDHTLLFGPPGLGKTTLAH 82

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++A+ELGVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+
Sbjct: 83  IIAKELGVNLRQTSGPVLERAGDLAALLTNLEPHDVLFIDEIHRLSPVVEEILYPALEDY 142

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           QLD+M+GEGP+ARSVKI+L  FTL+ ATTR G+LTNPL+DRFGI  RL FY   DL TIV
Sbjct: 143 QLDIMIGEGPAARSVKIDLPPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYSSADLATIV 202

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R A L  +++ D  A EIA RSRGTPRIA RLLRRVRD+AEV     +   +ADAAL  
Sbjct: 203 SRSAGLLQMSLDDTGAFEIARRSRGTPRIANRLLRRVRDYAEVKSNGRVDAALADAALQM 262

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D  G D +D ++L  +   F GGPVG++ I+A + E  D IED+IEPY+IQQGF+QR
Sbjct: 263 LDVDNEGLDMMDRKFLEAVLHKFAGGPVGLDNIAAAIGESPDTIEDVIEPYLIQQGFLQR 322

Query: 313 TPRGRLLMPIAWQHLGI 329
           TPRGR+    ++ H G+
Sbjct: 323 TPRGRVATERSYSHFGL 339


>gi|161525865|ref|YP_001580877.1| Holliday junction DNA helicase RuvB [Burkholderia multivorans ATCC
           17616]
 gi|189349414|ref|YP_001945042.1| Holliday junction DNA helicase RuvB [Burkholderia multivorans ATCC
           17616]
 gi|221202297|ref|ZP_03575331.1| Holliday junction DNA helicase RuvB [Burkholderia multivorans
           CGD2M]
 gi|221209111|ref|ZP_03582105.1| Holliday junction DNA helicase RuvB [Burkholderia multivorans CGD2]
 gi|221214502|ref|ZP_03587473.1| Holliday junction DNA helicase RuvB [Burkholderia multivorans CGD1]
 gi|238687039|sp|A9AH73|RUVB_BURM1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|160343294|gb|ABX16380.1| Holliday junction DNA helicase RuvB [Burkholderia multivorans ATCC
           17616]
 gi|189333436|dbj|BAG42506.1| holliday junction DNA helicase [Burkholderia multivorans ATCC
           17616]
 gi|221165759|gb|EED98234.1| Holliday junction DNA helicase RuvB [Burkholderia multivorans CGD1]
 gi|221171015|gb|EEE03468.1| Holliday junction DNA helicase RuvB [Burkholderia multivorans CGD2]
 gi|221177871|gb|EEE10284.1| Holliday junction DNA helicase RuvB [Burkholderia multivorans
           CGD2M]
          Length = 355

 Score =  381 bits (978), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 194/320 (60%), Positives = 239/320 (74%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           S E+     LRPR L+++ GQ +    L++FIEAAK R E LDHVL  GPPGLGKTTLA 
Sbjct: 20  SHEEVFERALRPRQLDDYVGQEKVRGQLEIFIEAAKRRREPLDHVLLFGPPGLGKTTLAH 79

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++ARE+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+
Sbjct: 80  IIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDY 139

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           Q+D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY+ + L  IV
Sbjct: 140 QIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYDADQLSRIV 199

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           QR A L    +    A EIA RSRGTPRIA RLLRRVRD+AEV     IT  IADAAL  
Sbjct: 200 QRSASLLNAQIDPNGALEIAKRSRGTPRIANRLLRRVRDYAEVKADGQITAAIADAALAM 259

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D +GFD +D + L  I   F GGPVGI+ ++A + E RD IED++EPY+IQQGF+QR
Sbjct: 260 LDVDPVGFDLMDRKLLEAILHKFDGGPVGIDNLAAAIGEERDTIEDVLEPYLIQQGFLQR 319

Query: 313 TPRGRLLMPIAWQHLGIDIP 332
           TPRGR+   + ++H G+  P
Sbjct: 320 TPRGRVATLLTYRHFGLAAP 339


>gi|172059668|ref|YP_001807320.1| Holliday junction DNA helicase RuvB [Burkholderia ambifaria MC40-6]
 gi|238689178|sp|B1YTD9|RUVB_BURA4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|171992185|gb|ACB63104.1| Holliday junction DNA helicase RuvB [Burkholderia ambifaria MC40-6]
          Length = 354

 Score =  381 bits (978), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 193/320 (60%), Positives = 240/320 (75%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           S E+     LRPR L+++ GQ +    L++FIEAAK R+E LDHVL  GPPGLGKTTLA 
Sbjct: 20  SHEEVFERALRPRQLDDYVGQEKVRGQLEIFIEAAKRRSEPLDHVLLFGPPGLGKTTLAH 79

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++ARE+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+
Sbjct: 80  IIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDY 139

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           Q+D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY+ + L  IV
Sbjct: 140 QIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYDADQLARIV 199

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           +R A L    +    A EIA RSRGTPRIA RLLRRVRDFAEV     IT  +ADAAL  
Sbjct: 200 RRSASLLNAHIDPSGALEIAKRSRGTPRIANRLLRRVRDFAEVKADGQITAAVADAALAM 259

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D +GFD +D + L  I   F GGPVGI+ ++A + E RD IED++EPY+IQQGF+QR
Sbjct: 260 LDVDPVGFDLMDRKLLEAILHKFDGGPVGIDNLAAAIGEERDTIEDVLEPYLIQQGFLQR 319

Query: 313 TPRGRLLMPIAWQHLGIDIP 332
           TPRGR+   + ++H G+  P
Sbjct: 320 TPRGRVATLLTYRHFGLSAP 339


>gi|163855206|ref|YP_001629504.1| Holliday junction DNA helicase RuvB [Bordetella petrii DSM 12804]
 gi|163258934|emb|CAP41233.1| holliday junction DNA helicase [Bordetella petrii]
          Length = 353

 Score =  381 bits (978), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 184/311 (59%), Positives = 230/311 (73%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L+E+ GQ  A   L++FI AA+ R EALDHVL  GPPGLGKTTLA ++A E+GV 
Sbjct: 34  LRPKALQEYVGQQRAREQLEIFIAAARKRGEALDHVLLFGPPGLGKTTLAHIIAHEMGVQ 93

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGPV+ + GDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+EDFQ+D+++GEG
Sbjct: 94  LRQTSGPVLERPGDLAALLTNLEKNDVLFIDEIHRLSPVVEEILYPALEDFQIDILIGEG 153

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  +DL  IV R A L   
Sbjct: 154 PAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYNADDLARIVTRSAGLLQA 213

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T + A E+A RSRGTPRIA RLLRRVRD+A+V    TI  + A  AL  L +D  G D
Sbjct: 214 EITPDGAAEVARRSRGTPRIANRLLRRVRDYAQVKSHGTIDADSAGRALAMLEVDPQGLD 273

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  I   F GGPVG+++++A + E RD IED+IEPY+IQ G++QRTPRGR+   
Sbjct: 274 LMDRKLLEAIIHKFDGGPVGVDSLAAAIGEERDTIEDVIEPYLIQHGYLQRTPRGRMATQ 333

Query: 322 IAWQHLGIDIP 332
             W+HLG+  P
Sbjct: 334 TTWRHLGLAPP 344


>gi|319896644|ref|YP_004134837.1| holliday junction DNA helicase ruvb [Haemophilus influenzae F3031]
 gi|317432146|emb|CBY80497.1| holliday junction DNA helicase RuvB [Haemophilus influenzae F3031]
          Length = 335

 Score =  381 bits (978), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 182/315 (57%), Positives = 236/315 (74%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           ED     +RP+ L ++ GQ + C  + +FI+AAK R +ALDH+L  GPPGLGKTTLA +V
Sbjct: 16  EDVIDRAIRPKLLADYVGQPQVCEQMDIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIV 75

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS  +EE+LYPAMED+QL
Sbjct: 76  ANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQL 135

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D+M+GEGP+ARS+K++L  FTL+ ATTR G LT+PL+DRFGI  RL FY +EDL +IV R
Sbjct: 136 DIMIGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVAR 195

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A    L +  +AA E+A RSRGTPRIA RLLRRVRD+A+V +   I+  +A  AL  L 
Sbjct: 196 SAGCLNLELEQQAAFEVARRSRGTPRIANRLLRRVRDYADVRNGGIISINVAKQALSMLD 255

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D  GFD LD + L+ +   F GGPVG++ ++A + E RD IED++EPY+IQQGF+QRTP
Sbjct: 256 VDDAGFDYLDRKLLSAVIERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTP 315

Query: 315 RGRLLMPIAWQHLGI 329
           RGR+     ++H G+
Sbjct: 316 RGRIATSQTYRHFGL 330


>gi|89899630|ref|YP_522101.1| Holliday junction DNA helicase RuvB [Rhodoferax ferrireducens T118]
 gi|123397365|sp|Q220I3|RUVB_RHOFD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|89344367|gb|ABD68570.1| Holliday junction DNA helicase RuvB [Rhodoferax ferrireducens T118]
          Length = 358

 Score =  381 bits (978), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 187/319 (58%), Positives = 239/319 (74%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
            E+A    LRP+ L+E+ GQ +    L++FI AA+ R EALDHVL  GPPGLGKTTL+ +
Sbjct: 25  NEEAVERALRPKLLDEYVGQAKVREQLEIFISAARMRDEALDHVLLFGPPGLGKTTLSHI 84

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +A ELGVN R TSGPV+ K  DLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED++
Sbjct: 85  IAHELGVNLRQTSGPVLEKPKDLAALLTNLEKNDVLFIDEIHRLSPVVEEILYPALEDYK 144

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           +D+M+GEGP+ARS+K++L  FTLI ATTR G+LTNPL+DRFGI  RL FY  E+L +IV+
Sbjct: 145 IDIMIGEGPAARSIKLDLQPFTLIGATTRAGMLTNPLRDRFGIVARLEFYSPEELASIVR 204

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A L  +   ++   EIA RSRGTPRIA RLLRRVRD+A+V  A  IT +IA  AL+ L
Sbjct: 205 RSAGLLKVPTDEKGGFEIARRSRGTPRIANRLLRRVRDYADVKGAGEITLDIAHRALVML 264

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D  GFD +D + L  +   F GGPVG++ I+A + E R+ IED+IEPY+IQQG++QRT
Sbjct: 265 DVDPQGFDLMDRKLLEAVIHRFDGGPVGLDNIAASIGEERETIEDVIEPYLIQQGYLQRT 324

Query: 314 PRGRLLMPIAWQHLGIDIP 332
           PRGR+    A++HLG+  P
Sbjct: 325 PRGRIATLAAYKHLGVTPP 343


>gi|270156710|ref|ZP_06185367.1| Holliday junction DNA helicase RuvB [Legionella longbeachae D-4968]
 gi|289164842|ref|YP_003454980.1| Holliday junction DNA helicase RuvB [Legionella longbeachae NSW150]
 gi|269988735|gb|EEZ94989.1| Holliday junction DNA helicase RuvB [Legionella longbeachae D-4968]
 gi|288858015|emb|CBJ11875.1| putative Holliday junction DNA helicase RuvB [Legionella
           longbeachae NSW150]
          Length = 338

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 185/321 (57%), Positives = 240/321 (74%), Gaps = 1/321 (0%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           NVS E  D ++ RP +L E+ GQ    S +++FI+AAK R++ALDHVL  GPPGLGKTTL
Sbjct: 13  NVSDEVIDRAI-RPLSLREYIGQENVSSQMQIFIDAAKKRSDALDHVLIFGPPGLGKTTL 71

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           A ++A E+GVN R TSGPVI +AGD+AA+LTNL++ D+LFIDEIHRLS ++EE+LYPAME
Sbjct: 72  ANIIAHEMGVNLRQTSGPVIERAGDIAAILTNLQENDILFIDEIHRLSPVIEEVLYPAME 131

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           D++LD+M+GEGP+ARS+K+ L  FTLI ATTR GLLT+PL+DRFGI  RL +Y ++ L  
Sbjct: 132 DYKLDIMIGEGPAARSIKLELPPFTLIGATTRAGLLTSPLRDRFGIVQRLEYYSVDSLTK 191

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           IV R A+L  +    E A EIA+RSRGTPRIA RLLRRVRD+AEV     I  E+A  AL
Sbjct: 192 IVARSAQLLNVKTQPEGAREIALRSRGTPRIANRLLRRVRDYAEVKGGGIINIEVAQKAL 251

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
             L +DK GFD +D + L  +   F GGPVGI++I+A + E +  IED++EP++IQQGF+
Sbjct: 252 EMLDVDKYGFDLMDRKLLMAVIEQFSGGPVGIDSIAAAIGEEKGTIEDVLEPFLIQQGFL 311

Query: 311 QRTPRGRLLMPIAWQHLGIDI 331
            RTPRGR+    A+ H GI I
Sbjct: 312 MRTPRGRIATRRAYMHFGIAI 332


>gi|330823178|ref|YP_004386481.1| Holliday junction ATP-dependent DNA helicase ruvB [Alicycliphilus
           denitrificans K601]
 gi|329308550|gb|AEB82965.1| Holliday junction ATP-dependent DNA helicase ruvB [Alicycliphilus
           denitrificans K601]
          Length = 375

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 188/319 (58%), Positives = 237/319 (74%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           QE+A    LRP+ L+E+ GQ +A   L++FI AA+ R+EALDHVL  GPPGLGKTTL+ +
Sbjct: 48  QEEALERALRPKLLQEYVGQAKAREQLEIFIGAARKRSEALDHVLLFGPPGLGKTTLSHI 107

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +A ELGVN R TSGPV+ K  DLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+Q
Sbjct: 108 IAAELGVNLRQTSGPVLEKPKDLAALLTNLERNDVLFIDEIHRLSPVVEEILYPALEDYQ 167

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           +D+M+GEGP+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  E+L  IV 
Sbjct: 168 IDIMIGEGPAARSIKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTPEELALIVM 227

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A L G  + D    EIA RSRGTPRIA RLLRRVRD+A+V     IT ++A+ AL  L
Sbjct: 228 RSASLLGTPIDDAGGAEIARRSRGTPRIANRLLRRVRDYADVKGTGRITLDMANRALTLL 287

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D  GFD +D + L  +   F GGPVG++ I+A + E    IED+IEPY+IQQG++QRT
Sbjct: 288 DVDPQGFDVMDRKLLEAVVHRFDGGPVGLDNIAASIGEESGTIEDVIEPYLIQQGYLQRT 347

Query: 314 PRGRLLMPIAWQHLGIDIP 332
           PRGR+    A++HLG+  P
Sbjct: 348 PRGRVATLAAYRHLGVAPP 366


>gi|167470861|ref|ZP_02335565.1| Holliday junction DNA helicase RuvB [Yersinia pestis FV-1]
          Length = 329

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 191/328 (58%), Positives = 244/328 (74%), Gaps = 1/328 (0%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S  V  ++  I   +RP+ L E+ GQ      +++FI+AAK R +ALDHVL 
Sbjct: 1   MIEADRLISAAVINDEESIDRAIRPKLLTEYVGQPHVREQMEIFIQAAKQRGDALDHVLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIIANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IV R AK  GL +T E A ++A RSRGTPRI  RLLRRVRDFAEV    
Sbjct: 181 LEFYQVADLEHIVSRSAKCLGLELTPEGAHQLARRSRGTPRITNRLLRRVRDFAEVRADG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  E+A  AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 AINGEVAMKALDMLNVDAEGFDFMDRKLLLAVIDKFMGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHL 327
           +EPY+IQQGFIQRTPRGR+    A++HL
Sbjct: 301 LEPYLIQQGFIQRTPRGRIATNHAYKHL 328


>gi|149375112|ref|ZP_01892884.1| Holliday junction DNA helicase B [Marinobacter algicola DG893]
 gi|149360476|gb|EDM48928.1| Holliday junction DNA helicase B [Marinobacter algicola DG893]
          Length = 342

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 186/330 (56%), Positives = 244/330 (73%), Gaps = 1/330 (0%)

Query: 1   MMDREGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L++    Q E+     +RP  L ++ GQ      +++FI AA+ R EALDHVL 
Sbjct: 1   MIESDRLITAQAGQYEEVQDRAIRPGVLADYVGQPAVREQMEIFISAARGRQEALDHVLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A E+GV+ ++TSGPV+ KAGDLAA+LTNLE+ DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIIANEMGVSIKTTSGPVLEKAGDLAAMLTNLEEGDVLFIDEIHRLSA 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ ATTR GLLT+PL+DRFGI  R
Sbjct: 121 AVEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGLLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY  +DL  I+ R A+L+ + + +  A EIA RSRGTPRIA RLLRRVRDFAEV    
Sbjct: 181 LEFYNTKDLTDIILRSARLSSVTIDNGGAYEIARRSRGTPRIANRLLRRVRDFAEVKADG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I+  IAD AL  L +D  GFD +D R L  +   F GGPVG+E+++A +SE R  IED+
Sbjct: 241 RISESIADQALNMLKVDAQGFDHMDRRLLLAMIEKFDGGPVGVESLAAAISEERGTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           +EP++IQQGF+ RTPRGR++   A+QH G+
Sbjct: 301 LEPFLIQQGFMVRTPRGRMVTSNAYQHFGV 330


>gi|293603636|ref|ZP_06686057.1| crossover junction ATP-dependent DNA helicase RuvB [Achromobacter
           piechaudii ATCC 43553]
 gi|292818072|gb|EFF77132.1| crossover junction ATP-dependent DNA helicase RuvB [Achromobacter
           piechaudii ATCC 43553]
          Length = 369

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 184/311 (59%), Positives = 230/311 (73%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L+E+ GQ  A   L++FI AA+ R EALDHVL  GPPGLGKTTLA ++A E+GV 
Sbjct: 46  LRPKALQEYVGQQRAREQLEIFIAAARKRGEALDHVLLFGPPGLGKTTLAHIIAHEMGVQ 105

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGPV+ + GDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+EDFQ+D+++GEG
Sbjct: 106 LRQTSGPVLERPGDLAALLTNLEKNDVLFIDEIHRLSPVVEEILYPALEDFQIDILIGEG 165

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY   DL  IV R A L   
Sbjct: 166 PAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYNATDLGHIVTRSAGLLNA 225

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T + A E+A R+RGTPRIA RLLRRVRD+AEV  + TI  ++A  AL  L +D  G D
Sbjct: 226 TITPDGAAEVARRARGTPRIANRLLRRVRDYAEVKASGTIDADVAGRALAMLEVDPQGLD 285

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  I   F GGPVG+++++A + E RD IED+IEPY+IQ G++QRTPRGR    
Sbjct: 286 LMDRKLLEAIIHKFDGGPVGVDSLAAAIGEERDTIEDVIEPYLIQHGYLQRTPRGRTATL 345

Query: 322 IAWQHLGIDIP 332
             W+HLG+  P
Sbjct: 346 STWRHLGLAPP 356


>gi|33152770|ref|NP_874123.1| Holliday junction DNA helicase B [Haemophilus ducreyi 35000HP]
 gi|44888427|sp|Q7VKV5|RUVB_HAEDU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|33148994|gb|AAP96512.1| Holliday junction DNA helicase RuvB [Haemophilus ducreyi 35000HP]
          Length = 334

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 181/310 (58%), Positives = 237/310 (76%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L ++ GQ      +++FI+AAK R EALDH+L  GPPGLGKTTLA +VA E+GVN
Sbjct: 23  IRPKLLTDYVGQPSVREQMEIFIKAAKLRHEALDHLLIFGPPGLGKTTLANIVANEMGVN 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R+TSGPV+ KAGDLAA+LTNLE  D+LFIDEIHRLS  +EE+LYPAMED+QLD+M+GEG
Sbjct: 83  IRTTSGPVLEKAGDLAAMLTNLEPYDILFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEG 142

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+K++L  FTL+ ATTR G LT+PL+DRFGI  RL FY ++DL +IV+R A    L
Sbjct: 143 PAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQRLEFYNVDDLTSIVKRSAACLNL 202

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            ++ + A E+A RSRGTPRIA RLLRRVRD+A+V +   IT EIA  AL+ L +D  GFD
Sbjct: 203 NLSADGAYEVARRSRGTPRIANRLLRRVRDYADVRNNGVITSEIAKQALVMLDVDPQGFD 262

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D++ L  I   F GGPVG++ ++A + E R+ IED++EPY+IQQGF+QRTPRGR+   
Sbjct: 263 FMDIKLLQAIVERFDGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRIATT 322

Query: 322 IAWQHLGIDI 331
             + HLGI +
Sbjct: 323 RTYAHLGISL 332


>gi|46143843|ref|ZP_00133974.2| COG2255: Holliday junction resolvasome, helicase subunit
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|303252522|ref|ZP_07338685.1| hypothetical protein APP2_1499 [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307247271|ref|ZP_07529320.1| Holliday junction ATP-dependent DNA helicase ruvB [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|307249499|ref|ZP_07531487.1| Holliday junction ATP-dependent DNA helicase ruvB [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|307256312|ref|ZP_07538095.1| Holliday junction ATP-dependent DNA helicase ruvB [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|307260745|ref|ZP_07542434.1| Holliday junction ATP-dependent DNA helicase ruvB [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|322514921|ref|ZP_08067936.1| crossover junction ATP-dependent DNA helicase RuvB [Actinobacillus
           ureae ATCC 25976]
 gi|171855132|sp|A3MZ06|RUVB_ACTP2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|302648490|gb|EFL78683.1| hypothetical protein APP2_1499 [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|306856244|gb|EFM88398.1| Holliday junction ATP-dependent DNA helicase ruvB [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306858492|gb|EFM90560.1| Holliday junction ATP-dependent DNA helicase ruvB [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306865138|gb|EFM97038.1| Holliday junction ATP-dependent DNA helicase ruvB [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306869584|gb|EFN01372.1| Holliday junction ATP-dependent DNA helicase ruvB [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|322119109|gb|EFX91263.1| crossover junction ATP-dependent DNA helicase RuvB [Actinobacillus
           ureae ATCC 25976]
          Length = 334

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 186/330 (56%), Positives = 247/330 (74%), Gaps = 1/330 (0%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + ++S +  +E+  I   +RP+ L ++ GQ      +++FI+AAK R EALDH+L 
Sbjct: 1   MIEADRIISASPKREEEVIDRAIRPKLLADYVGQPSVREQMEIFIKAAKLRDEALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPYDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            +EE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ ATTR G LT+PL+DRFGI  R
Sbjct: 121 AIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY ++DL +IV+R A    L ++ + A E+A RSRGTPRIA RLLRRVRD+A+V +  
Sbjct: 181 LEFYSVDDLTSIVKRSADCLNLNLSPDGAYEVARRSRGTPRIANRLLRRVRDYADVRNNG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT +IA  AL  L +D  GFD +D++ L  I   F GGPVG++ ++A + E RD IED+
Sbjct: 241 VITSDIAKQALAMLDVDSEGFDFMDIKLLQAIVERFDGGPVGLDNLAAAIGEERDTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           +EPY+IQQGF+QRTPRGR+     + HLGI
Sbjct: 301 LEPYLIQQGFLQRTPRGRIATSRTYAHLGI 330


>gi|254482449|ref|ZP_05095688.1| Holliday junction DNA helicase RuvB [marine gamma proteobacterium
           HTCC2148]
 gi|214037140|gb|EEB77808.1| Holliday junction DNA helicase RuvB [marine gamma proteobacterium
           HTCC2148]
          Length = 351

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 183/319 (57%), Positives = 239/319 (74%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           +EDA    +RP++L E+ GQ   C  + +F++AAK R E LDH L  GPPGLGKTTLA +
Sbjct: 16  REDALDRAIRPKSLAEYVGQKVVCDQMSIFLQAAKGRDEPLDHTLIFGPPGLGKTTLASI 75

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +A E+GV+ ++TSGPV+ KAGD+AAL+TNLE  DVLFIDEIHRLS  VEE+LYPAMED+Q
Sbjct: 76  IANEMGVSLKTTSGPVLEKAGDIAALMTNLEPGDVLFIDEIHRLSPFVEEVLYPAMEDYQ 135

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           LD+M+GEGP+ARS+K++L  FTL+ ATTR GLLT+PL+DRFGI  RL FYE+ DL  IV+
Sbjct: 136 LDIMIGEGPAARSIKLDLPPFTLVGATTRAGLLTSPLRDRFGIVQRLEFYEVADLAHIVE 195

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A +  + +  + A EIA RSRGTPRIA RLLRRVRD+AEV     IT  +AD AL  L
Sbjct: 196 RSANILEIGIDTKGATEIARRSRGTPRIANRLLRRVRDYAEVKADGYITDAVADRALDML 255

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
           ++D+ GFD  D R +  +   F GGPVG+++++A +SE R  IED++EPY+IQQGF+ RT
Sbjct: 256 SVDQHGFDHQDRRLMLTMIEKFDGGPVGVDSLAAAISEERGTIEDVLEPYLIQQGFMVRT 315

Query: 314 PRGRLLMPIAWQHLGIDIP 332
           PRGR++   A+ H G+  P
Sbjct: 316 PRGRMVTRNAYLHFGLPQP 334


>gi|238786431|ref|ZP_04630351.1| Holliday junction DNA helicase RuvB [Yersinia bercovieri ATCC
           43970]
 gi|238712665|gb|EEQ04757.1| Holliday junction DNA helicase RuvB [Yersinia bercovieri ATCC
           43970]
          Length = 335

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 191/330 (57%), Positives = 246/330 (74%), Gaps = 1/330 (0%)

Query: 1   MMDREGLLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S  V S E++    +RP+ L E+ GQ      +++FI+AA+ R +ALDHVL 
Sbjct: 2   MIEADRLISAGVISDEESIDRAIRPKLLAEYVGQPHVREQMEIFIQAARQRGDALDHVLI 61

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 62  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 121

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 122 VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 181

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IV R A+  GL +T E A ++A RSRGTPRI  RLLRRVRDFAEV    
Sbjct: 182 LEFYQVADLEHIVSRSARCMGLELTAEGAHQLARRSRGTPRITNRLLRRVRDFAEVRADG 241

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  ++A  AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED+
Sbjct: 242 AIDGDVAMKALDMLNVDAEGFDFMDRKLLLAVIDKFMGGPVGLDNLAAAIGEERETIEDV 301

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           +EPY+IQQGFIQRTPRGR+    A++H GI
Sbjct: 302 LEPYLIQQGFIQRTPRGRIATNHAYKHFGI 331


>gi|303249557|ref|ZP_07335764.1| hypothetical protein APP6_0959 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307251816|ref|ZP_07533718.1| Holliday junction ATP-dependent DNA helicase ruvB [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307262876|ref|ZP_07544500.1| Holliday junction ATP-dependent DNA helicase ruvB [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|302651631|gb|EFL81780.1| hypothetical protein APP6_0959 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306860723|gb|EFM92734.1| Holliday junction ATP-dependent DNA helicase ruvB [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306871781|gb|EFN03501.1| Holliday junction ATP-dependent DNA helicase ruvB [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 334

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 186/330 (56%), Positives = 247/330 (74%), Gaps = 1/330 (0%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + ++S +  +E+  I   +RP+ L ++ GQ      +++FI+AAK R EALDH+L 
Sbjct: 1   MIEADRIISASPKREEEIIDRAIRPKLLADYVGQPSVREQMEIFIKAAKLRDEALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPYDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            +EE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ ATTR G LT+PL+DRFGI  R
Sbjct: 121 AIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY ++DL +IV+R A    L ++ + A E+A RSRGTPRIA RLLRRVRD+A+V +  
Sbjct: 181 LEFYSVDDLTSIVKRSADCLNLNLSPDGAYEVARRSRGTPRIANRLLRRVRDYADVRNNG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT +IA  AL  L +D  GFD +D++ L  I   F GGPVG++ ++A + E RD IED+
Sbjct: 241 VITSDIAKQALAMLDVDSEGFDFMDIKLLQAIVERFDGGPVGLDNLAAAIGEERDTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           +EPY+IQQGF+QRTPRGR+     + HLGI
Sbjct: 301 LEPYLIQQGFLQRTPRGRIATSRTYAHLGI 330


>gi|113866526|ref|YP_725015.1| Holliday junction DNA helicase RuvB [Ralstonia eutropha H16]
 gi|123033277|sp|Q0KEC4|RUVB_RALEH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|113525302|emb|CAJ91647.1| holliday junction resolvasome, helicase subunit RuvB [Ralstonia
           eutropha H16]
          Length = 352

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 190/321 (59%), Positives = 242/321 (75%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           SQE+A    LRP+ L+E+ GQ +    L +F+ AA+ R EALDHVL  GPPGLGKTTLA 
Sbjct: 21  SQEEAFERALRPKLLDEYVGQEKVRGQLDIFMHAARNRREALDHVLLFGPPGLGKTTLAH 80

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++ARE+GVN R TSGPV+ + GDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+
Sbjct: 81  IIAREMGVNLRQTSGPVLERPGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDY 140

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           Q+D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  ++L  IV
Sbjct: 141 QIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTADELARIV 200

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R A+L    +  + A EIA R+RGTPRIA RLLRRVRD+AEV     ITR +ADAAL  
Sbjct: 201 TRSAQLLHARIDPQGALEIARRARGTPRIANRLLRRVRDYAEVKGDGNITRAMADAALAM 260

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D +GFD +D + L  +   FGGGPVG++ ++A + E RD IED++EPY+IQQG++QR
Sbjct: 261 LDVDSVGFDLMDRKLLEAVLHKFGGGPVGVDNLAAAIGEERDTIEDVLEPYLIQQGYLQR 320

Query: 313 TPRGRLLMPIAWQHLGIDIPH 333
           TPRGR+    A++H G+  P 
Sbjct: 321 TPRGRVATAAAYRHFGLANPQ 341


>gi|321472926|gb|EFX83895.1| hypothetical protein DAPPUDRAFT_315314 [Daphnia pulex]
          Length = 339

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 195/331 (58%), Positives = 248/331 (74%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M    LL+ N  + D     LRP +LE F GQ     NL+VFI++AK R EALDHVLF G
Sbjct: 1   MTEARLLTPNPQEGDFSDKSLRPLSLETFVGQEPLRRNLRVFIDSAKVRGEALDHVLFFG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
            PGLGKTTLAQ+VA+ELGVNFR TSGP I++AGDLAALLTNL+ RDVLFIDEIHRL+  V
Sbjct: 61  SPGLGKTTLAQIVAQELGVNFRITSGPTISRAGDLAALLTNLQPRDVLFIDEIHRLNTAV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILYPA+EDF+LDLM+GEGP+ARS++I+L  FTLI ATTR GLL+ PL+DRFG+ + L 
Sbjct: 121 EEILYPALEDFKLDLMIGEGPAARSLRIDLQPFTLIGATTRSGLLSAPLRDRFGVLLNLV 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY   +L+ I+ + A    L++  EAA E+A RSRGTPR+A RLLRRVR+FA V  +  +
Sbjct: 181 FYTPLELQRILLQAATKLDLSLPSEAAFELARRSRGTPRVALRLLRRVRNFAVVQQSSCV 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
              +   AL  L +D++G D LD RYL+ IA  F GGPVGIET++A L+E R+ +E+++E
Sbjct: 241 EVALVRQALDHLDVDEVGLDALDRRYLSHIALYFLGGPVGIETLAAALAEERETLEEIVE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           P++IQQGF+QRT RGR+L P A+ HLG+  P
Sbjct: 301 PFLIQQGFLQRTSRGRVLSPKAYTHLGLPSP 331


>gi|110833614|ref|YP_692473.1| Holliday junction DNA helicase RuvB [Alcanivorax borkumensis SK2]
 gi|122959608|sp|Q0VRJ7|RUVB_ALCBS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|110646725|emb|CAL16201.1| Holliday junction DNA helicase RuvB [Alcanivorax borkumensis SK2]
          Length = 342

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 184/322 (57%), Positives = 237/322 (73%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           SQE+     +RP +L ++ GQ +    +++FI+AA+ R EALDH L  GPPGLGKTTLA 
Sbjct: 14  SQEEQQDRAIRPASLADYHGQPKVSERMEIFIDAARGRNEALDHTLIFGPPGLGKTTLAH 73

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++ARE+G + +STSGPV+ KAGDLAA+LTNLE+ DVLF+DEIHRLS +VEEILYPAMED+
Sbjct: 74  IIAREMGCDLKSTSGPVLEKAGDLAAILTNLEEGDVLFVDEIHRLSPVVEEILYPAMEDY 133

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           QLD+M+GEGP+ARS+K++L  FTL+ ATTR GLLT PL+DRFGI  RL FY ++DL  IV
Sbjct: 134 QLDIMIGEGPAARSIKLDLPPFTLVGATTRAGLLTAPLRDRFGIVQRLEFYSVDDLSGIV 193

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R   +  + +    A E+A R+RGTPRIA RLLRRVRD+AEV     IT EIA  AL  
Sbjct: 194 SRACDILAIPIEAAGAMEVARRARGTPRIANRLLRRVRDYAEVKGDGRITEEIAQRALDM 253

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D  G D  D R L MI   F GGPVG+E+++A L+E    +E+++EPY+IQQGFIQR
Sbjct: 254 LEVDSCGLDGTDRRLLDMIMHKFDGGPVGLESLAAALNEDSGTLEEVVEPYLIQQGFIQR 313

Query: 313 TPRGRLLMPIAWQHLGIDIPHR 334
           TPRGR +   AW+H G+  P +
Sbjct: 314 TPRGRAVTNHAWRHFGLQRPRQ 335


>gi|320539864|ref|ZP_08039523.1| ATP-dependent DNA helicase, component of RuvABC resolvasome
           [Serratia symbiotica str. Tucson]
 gi|320030050|gb|EFW12070.1| ATP-dependent DNA helicase, component of RuvABC resolvasome
           [Serratia symbiotica str. Tucson]
          Length = 335

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 183/309 (59%), Positives = 236/309 (76%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L E+ GQ   C  +++FI+AA+ R +ALDH+L  GPPGLGKTTLA +VA E+GVN
Sbjct: 23  IRPKLLAEYVGQPHVCEQMEIFIQAARQRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS +VEE+LYPAMED+QLD+M+GEG
Sbjct: 83  LRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEG 142

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+K++L  FTL+ ATTR G LT+PL+DRFGI  RL FY++ DL+ IV R A+  GL
Sbjct: 143 PAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQRLEFYQVADLQLIVSRSARCLGL 202

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            ++ + A +IA R+RGTPRIA RLLRRVRDFAEV     I  E+A  AL  L +D  GFD
Sbjct: 203 DLSGDGAHQIARRARGTPRIANRLLRRVRDFAEVRANGLINGEVAMQALDMLNVDAEGFD 262

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  I   F GGPVG++ ++A + E R+ IED+IEP++IQ GFIQRTPRGR+   
Sbjct: 263 YMDRKLLLAIIDKFTGGPVGLDNLAAAIGEERETIEDVIEPFLIQHGFIQRTPRGRMATH 322

Query: 322 IAWQHLGID 330
            A++H GI+
Sbjct: 323 HAYRHFGIE 331


>gi|325528761|gb|EGD05823.1| Holliday junction DNA helicase RuvB [Burkholderia sp. TJI49]
          Length = 355

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 192/320 (60%), Positives = 240/320 (75%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           S E+     LRPR L+++ GQ +    L++FIEAAK R+E LDHVL  GPPGLGKTTLA 
Sbjct: 20  SHEEVFERALRPRQLDDYVGQEKVRGQLEIFIEAAKRRSEPLDHVLLFGPPGLGKTTLAH 79

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++ARE+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+
Sbjct: 80  IIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDY 139

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           Q+D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY+ + L  IV
Sbjct: 140 QIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYDADQLSRIV 199

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           +R A L    +    A EIA RSRGTPRIA RLLRRVRD+AEV     IT  +ADAAL  
Sbjct: 200 RRSASLLNAQIDPNGALEIARRSRGTPRIANRLLRRVRDYAEVKADGQITAAVADAALAM 259

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D +GFD +D + L  I   F GGPVGI+ ++A + E RD IED++EPY+IQQGF+QR
Sbjct: 260 LDVDPVGFDLMDRKLLEAILHKFDGGPVGIDNLAAAIGEERDTIEDVLEPYLIQQGFLQR 319

Query: 313 TPRGRLLMPIAWQHLGIDIP 332
           TPRGR+   + ++H G+  P
Sbjct: 320 TPRGRVATLLTYRHFGLAAP 339


>gi|303258189|ref|ZP_07344196.1| holliday junction DNA helicase RuvB [Burkholderiales bacterium
           1_1_47]
 gi|331000259|ref|ZP_08323943.1| Holliday junction DNA helicase RuvB [Parasutterella
           excrementihominis YIT 11859]
 gi|302858942|gb|EFL82026.1| holliday junction DNA helicase RuvB [Burkholderiales bacterium
           1_1_47]
 gi|329572425|gb|EGG54078.1| Holliday junction DNA helicase RuvB [Parasutterella
           excrementihominis YIT 11859]
          Length = 346

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 188/335 (56%), Positives = 239/335 (71%), Gaps = 1/335 (0%)

Query: 1   MMDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M D   +LS    +++  I   LRP  L+++ GQ      L +FI AA+ R EALDHVL 
Sbjct: 1   MADSNSILSSERKEKEEVIDKALRPTRLKDYAGQDGIREQLDLFITAARNRGEALDHVLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A ELGV  R TSGPV+ KAGDLAA+LT+LE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIIANELGVKLRQTSGPVLEKAGDLAAMLTSLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPA+EDF+LD+M+GEGP+ARS+KI+L  FTL+ ATTR G LT PLQDRFGI  +
Sbjct: 121 VVEEILYPALEDFKLDIMIGEGPAARSIKIDLPHFTLVGATTRAGSLTKPLQDRFGIRAQ 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y  EDL TIV R   L  +     AA EIA RSRGTPRIA RLLRR+RDF+EV H  
Sbjct: 181 LQYYSPEDLTTIVLRSMHLLNMPADKGAAGEIARRSRGTPRIANRLLRRIRDFSEVRHQG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            ++ +IA  AL  L +D +G D LD ++L  I   F GGPVGIE +++ + E  D ++D+
Sbjct: 241 QLSEQIAKDALTMLEVDPIGLDSLDCQFLLAIIEKFQGGPVGIENLASAVGEESDTLQDM 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           +EPY+I++GF+QRTPRGR+  P A+ H G+D  H+
Sbjct: 301 VEPYLIKEGFVQRTPRGRVATPRAYSHFGLDRKHK 335


>gi|253688207|ref|YP_003017397.1| Holliday junction DNA helicase RuvB [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|259495673|sp|C6DFF2|RUVB_PECCP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|251754785|gb|ACT12861.1| Holliday junction DNA helicase RuvB [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 336

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 184/308 (59%), Positives = 236/308 (76%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L E+ GQ +    +++FI+AA+ R +ALDH+L  GPPGLGKTTLA +VA E+GVN
Sbjct: 23  MRPKLLNEYVGQPQVREQMEIFIQAARKRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R+TSGPV+ KAGDLAALLTNLE  DVLFIDEIHRLS +VEE+LYPAMED+QLD+M+GEG
Sbjct: 83  MRTTSGPVLEKAGDLAALLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEG 142

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  RL FY + DL+ IV R A+  GL
Sbjct: 143 PAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYNVADLQYIVGRSAQCLGL 202

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T E + E+A R+RGTPRIA RLLRRVRDF+EV     IT  +A  AL  LA+D  GFD
Sbjct: 203 DLTPEGSLEVARRARGTPRIANRLLRRVRDFSEVKSEGAITGVVATQALDMLAVDTEGFD 262

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  I   F GGPVG++ ++A + E R+ IED++EP++IQQGFIQRTPRGR+   
Sbjct: 263 YMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETIEDVLEPFLIQQGFIQRTPRGRMATQ 322

Query: 322 IAWQHLGI 329
            A++H G+
Sbjct: 323 HAYRHFGL 330


>gi|239817618|ref|YP_002946528.1| Holliday junction DNA helicase RuvB [Variovorax paradoxus S110]
 gi|259495682|sp|C5CM03|RUVB_VARPS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|239804195|gb|ACS21262.1| Holliday junction DNA helicase RuvB [Variovorax paradoxus S110]
          Length = 354

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 188/319 (58%), Positives = 236/319 (73%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           QE+A    LRP+ L+E+ GQ +    L++FI AA+ R EALDHVL  GPPGLGKTTL+ +
Sbjct: 24  QEEAIERALRPKLLDEYVGQAKVREQLEIFIGAARKRKEALDHVLLFGPPGLGKTTLSHI 83

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +A ELGVN R TSGPV+ K  DLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+Q
Sbjct: 84  IAAELGVNLRQTSGPVLEKPKDLAALLTNLEPNDVLFIDEIHRLSPVVEEILYPALEDYQ 143

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           +D+M+GEGP+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  E+L  IV+
Sbjct: 144 IDIMIGEGPAARSIKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTPEELALIVR 203

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A L  +        EIA RSRGTPRIA RLLRRVRD+AEV     IT +IA  AL+ L
Sbjct: 204 RSAGLLKVDTDAAGGFEIARRSRGTPRIANRLLRRVRDYAEVKGNGRITEDIAHKALVML 263

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D  GFD +D + L  +   F GGPVG++ ++A + E RD IED+IEPY+IQQG++QRT
Sbjct: 264 DVDPQGFDLMDRKLLEAVIHRFDGGPVGLDNVAASIGEERDTIEDVIEPYLIQQGYLQRT 323

Query: 314 PRGRLLMPIAWQHLGIDIP 332
           PRGR+    A++HLG+  P
Sbjct: 324 PRGRIATLAAYRHLGVTPP 342


>gi|157371016|ref|YP_001479005.1| Holliday junction DNA helicase RuvB [Serratia proteamaculans 568]
 gi|167012672|sp|A8GFI7|RUVB_SERP5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|157322780|gb|ABV41877.1| Holliday junction DNA helicase RuvB [Serratia proteamaculans 568]
          Length = 334

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 183/308 (59%), Positives = 235/308 (76%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L E+ GQ      +++FI+AAK R +ALDH+L  GPPGLGKTTLA +VA E+GVN
Sbjct: 23  IRPKLLTEYVGQPHVREQMEIFIQAAKQRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS +VEE+LYPAMED+QLD+M+GEG
Sbjct: 83  LRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEG 142

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+K++L  FTL+ ATTR G LT+PL+DRFGI  RL FY++ DL+ IV R A   GL
Sbjct: 143 PAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQRLEFYQVADLQHIVSRSANCLGL 202

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +++E A ++A R+RGTPRIA RLLRRVRDFAEV     I  E+A  AL  L +D  GFD
Sbjct: 203 DLSEEGAHQVARRARGTPRIANRLLRRVRDFAEVRANGVINGEVAMQALDMLNVDAEGFD 262

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  I   F GGPVG++ ++A + E R+ IED+IEP++IQQGFIQRTPRGR+   
Sbjct: 263 YMDRKLLLAIIDKFTGGPVGLDNLAAAIGEERETIEDVIEPFLIQQGFIQRTPRGRMATN 322

Query: 322 IAWQHLGI 329
            A++H G+
Sbjct: 323 HAYKHFGM 330


>gi|296132700|ref|YP_003639947.1| Holliday junction DNA helicase RuvB [Thermincola sp. JR]
 gi|296031278|gb|ADG82046.1| Holliday junction DNA helicase RuvB [Thermincola potens JR]
          Length = 342

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 185/326 (56%), Positives = 246/326 (75%), Gaps = 3/326 (0%)

Query: 5   EGLLSRNVSQED--ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           E ++S    +ED   D SL RPR + E+ GQ +   NL+VF+EAAK R+E+LDHVL  GP
Sbjct: 3   ERIVSTKPREEDMEGDYSL-RPRRISEYIGQQKVKENLRVFVEAAKQRSESLDHVLLFGP 61

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++A E+GVN R TSGP I + GDLAA+LTNL   D+LFIDEIHRL+  VE
Sbjct: 62  PGLGKTTLAHIIANEMGVNIRITSGPAIERPGDLAAILTNLGQGDILFIDEIHRLNRSVE 121

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMED+ LD+++G+GPSARS++I+L +FTLI ATTR G+LT+PL+DRFG+ +RL F
Sbjct: 122 EVLYPAMEDYALDIIIGKGPSARSLRIDLPKFTLIGATTRAGMLTSPLRDRFGVILRLEF 181

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  E+L  IV+R A +  + + DE A EIA RSRGTPR+A RLL+RVRDFA+V     ++
Sbjct: 182 YTAEELMEIVRRAAAILQVTIDDEGAYEIARRSRGTPRVANRLLKRVRDFAQVKANGHVS 241

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           +E+AD AL  L +D +G D +D R LT I   FGGGPVG++T++A + E  D IED++EP
Sbjct: 242 KEVADMALNSLDVDFLGLDSIDRRLLTTIIDKFGGGPVGLDTLAASIGEEADTIEDVVEP 301

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLG 328
           +++Q GF+ RTPRGR   P+A++HLG
Sbjct: 302 FLLQLGFLNRTPRGRQATPLAYKHLG 327


>gi|238019732|ref|ZP_04600158.1| hypothetical protein VEIDISOL_01607 [Veillonella dispar ATCC 17748]
 gi|237863773|gb|EEP65063.1| hypothetical protein VEIDISOL_01607 [Veillonella dispar ATCC 17748]
          Length = 334

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 190/323 (58%), Positives = 239/323 (73%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L+     +ED     LRP+   E+ GQ EA  NL V+I+AAK R EALDHVL  GPPGLG
Sbjct: 7   LVGNGEHEEDMWQYSLRPKFFNEYVGQEEAKGNLNVYIQAAKQRGEALDHVLLYGPPGLG 66

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTTLA ++A ELGVNFR TSGP I K+GDLAA+LTNL+D DVLFIDEIHRLS  VEE+LY
Sbjct: 67  KTTLAGIIANELGVNFRITSGPAIEKSGDLAAILTNLDDHDVLFIDEIHRLSRSVEEVLY 126

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            AMED+ +D+++G+GPSAR+V+I+L +FTL+ ATTR G L  PL+DRFGI  RL +Y+  
Sbjct: 127 SAMEDYAIDIIIGKGPSARTVRIDLPKFTLVGATTRAGALAAPLRDRFGIINRLEYYKQP 186

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +L+ IV R A++  + +    A EIA RSRGTPRIA RLL+RVRDFA+V     IT+ IA
Sbjct: 187 ELEFIVTRAAEILHIGIEPTGASEIARRSRGTPRIANRLLKRVRDFAQVIGDGVITQSIA 246

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           D AL RL IDK G D++D R L  I   + GGPVGI+TI+A +SE RD IED+ EPY++Q
Sbjct: 247 DDALQRLYIDKEGLDRIDRRVLECIIEKYDGGPVGIDTIAAAISEERDTIEDVYEPYLMQ 306

Query: 307 QGFIQRTPRGRLLMPIAWQHLGI 329
            GF+ RTPRGR+   +A++HLGI
Sbjct: 307 LGFLGRTPRGRVATKLAYEHLGI 329


>gi|332527519|ref|ZP_08403571.1| Holliday junction DNA helicase RuvB [Rubrivivax benzoatilyticus
           JA2]
 gi|332111926|gb|EGJ11904.1| Holliday junction DNA helicase RuvB [Rubrivivax benzoatilyticus
           JA2]
          Length = 354

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 188/321 (58%), Positives = 236/321 (73%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
            E+A    LRP+ L+E+ GQ  A   L++FI AA+ RAEALDHVL  GPPGLGKTTLA +
Sbjct: 25  NEEAIERALRPKVLDEYVGQARAREQLEIFIHAARGRAEALDHVLLFGPPGLGKTTLAHI 84

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           VA ELGVN R TSGPV+ K  DLAA+LTNLE  DVLFIDEIHRLS +VEEILYPA+ED+Q
Sbjct: 85  VAAELGVNLRQTSGPVLEKPRDLAAILTNLEKNDVLFIDEIHRLSPVVEEILYPALEDYQ 144

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           +D+M+G+GP+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  ++L  IV 
Sbjct: 145 IDIMIGDGPAARSIKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYNADELTRIVT 204

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A L G+ V    A E+A RSRGTPRIA RLLRRVRD+A+V     I   IAD AL  L
Sbjct: 205 RSAGLLGVEVDPAGALEVARRSRGTPRIANRLLRRVRDYAQVKGDGRIDAPIADKALALL 264

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D +GFD +D + L  +   F GGPVG++ ++A + E    IED+IEPY+IQQG++QRT
Sbjct: 265 DVDPLGFDVMDRKLLEAVIHRFDGGPVGLDNVAAAIGEESGTIEDVIEPYLIQQGYLQRT 324

Query: 314 PRGRLLMPIAWQHLGIDIPHR 334
           PRGR+    A++HLG+  P R
Sbjct: 325 PRGRVATLAAYRHLGLSPPQR 345


>gi|254521057|ref|ZP_05133112.1| Holliday junction DNA helicase RuvB [Stenotrophomonas sp. SKA14]
 gi|219718648|gb|EED37173.1| Holliday junction DNA helicase RuvB [Stenotrophomonas sp. SKA14]
          Length = 346

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 187/316 (59%), Positives = 239/316 (75%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           ++DA  + +RP+ L ++ GQV     ++++I+AAK R +ALDHVL  GPPGLGKTTL+ V
Sbjct: 14  EDDAADASIRPKRLADYLGQVPVREQMEIYIQAAKGRGDALDHVLIFGPPGLGKTTLSHV 73

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +A ELGV  R TSGPVI KAGDLAALLTNL+  DVLFIDEIHRLS +VEE+LYPAMEDFQ
Sbjct: 74  IANELGVALRVTSGPVIEKAGDLAALLTNLQPHDVLFIDEIHRLSPVVEEVLYPAMEDFQ 133

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           +D+M+GEGP+ARS+KI+L  FTLI ATTR GLLT PL+DRFGI  RL FY +E+L  IV+
Sbjct: 134 IDIMIGEGPAARSIKIDLPPFTLIGATTRAGLLTAPLRDRFGIVQRLEFYSVEELTRIVR 193

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A + G+  T + A EIA R+RGTPRIA RLLRRVRD+A+V     I   +A AA+  L
Sbjct: 194 RSASILGIDCTADGAGEIARRARGTPRIANRLLRRVRDYAQVKAGGHIDEAVAQAAMQML 253

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D  GFD+LD R L  +   F GGPVGIE+++A LSE R  +ED++EPY+IQQGF+ RT
Sbjct: 254 KVDPEGFDELDRRLLKTMVDYFDGGPVGIESLAAALSEERGTLEDVVEPYLIQQGFLVRT 313

Query: 314 PRGRLLMPIAWQHLGI 329
            RGR+    A++H+G+
Sbjct: 314 ARGRMATHKAYRHMGL 329


>gi|56460193|ref|YP_155474.1| Holliday junction DNA helicase RuvB [Idiomarina loihiensis L2TR]
 gi|81821735|sp|Q5QYU5|RUVB_IDILO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|56179203|gb|AAV81925.1| Holliday junction resolvasome, helicase subunit [Idiomarina
           loihiensis L2TR]
          Length = 339

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 188/324 (58%), Positives = 239/324 (73%), Gaps = 1/324 (0%)

Query: 7   LLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           L+   V  ED  +   +RP+TL ++TGQ      + +FIEAA+ R EALDH+L  GPPGL
Sbjct: 12  LIEPEVQGEDEAVDRAIRPKTLADYTGQKHVVEQMGIFIEAARKRQEALDHLLIFGPPGL 71

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLA +VA EL V+ ++TSGPV+ KAGDLAALLTNLE  DVLFIDEIHRLS +VEEIL
Sbjct: 72  GKTTLANIVANELDVSIKTTSGPVLEKAGDLAALLTNLEAHDVLFIDEIHRLSPVVEEIL 131

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           YPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  RL FY++
Sbjct: 132 YPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGALTSPLRDRFGIVQRLEFYDV 191

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
            +L  IV R A    + + D  A EIA RSRGTPRIA RLLRRVRD+AEV     +    
Sbjct: 192 NELTDIVGRSAHFMNVRMLDGGAREIARRSRGTPRIANRLLRRVRDYAEVRGNGDVDEVT 251

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           A+AAL  + +D+ GFD +D + L  I   F GGPVG++ ++A + E +D IED++EPY+I
Sbjct: 252 ANAALTMVDVDQAGFDYMDRKLLLAIMEKFMGGPVGLDNLAAAIGEEKDTIEDVLEPYLI 311

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGI 329
           QQGF+QRTPRGR+  P A+QH G+
Sbjct: 312 QQGFLQRTPRGRIATPRAYQHFGL 335


>gi|254360615|ref|ZP_04976764.1| crossover junction endonuclease RuvB [Mannheimia haemolytica
           PHL213]
 gi|153091155|gb|EDN73160.1| crossover junction endonuclease RuvB [Mannheimia haemolytica
           PHL213]
          Length = 334

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 186/330 (56%), Positives = 246/330 (74%), Gaps = 1/330 (0%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + ++S +  +E+  I   +RP+ L ++ GQ      +++FI+AAK R EALDH+L 
Sbjct: 1   MIEADRIISASPKREEEVIDRAIRPKLLADYVGQPSVHDQMEIFIKAAKLREEALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPYDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            +EE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ ATTR G LT+PL+DRFGI  R
Sbjct: 121 AIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY ++DL  IV+R A    L ++ + A E+A RSRGTPRIA RLLRRVRD+A+V +  
Sbjct: 181 LEFYSVDDLTLIVKRSADCLNLNLSADGAYEVARRSRGTPRIANRLLRRVRDYADVRNNG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT +IA  AL  L +D  GFD +D++ L  I   F GGPVG++ ++A + E RD IED+
Sbjct: 241 IITSDIAKQALAMLDVDSEGFDFMDIKLLQAIVERFDGGPVGLDNLAAAIGEERDTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           +EPY+IQQGF+QRTPRGR+     + HLGI
Sbjct: 301 LEPYLIQQGFLQRTPRGRIATSRTYAHLGI 330


>gi|262171191|ref|ZP_06038869.1| holliday junction DNA helicase RuvB [Vibrio mimicus MB-451]
 gi|261892267|gb|EEY38253.1| holliday junction DNA helicase RuvB [Vibrio mimicus MB-451]
          Length = 334

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 181/309 (58%), Positives = 235/309 (76%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L ++ GQ      +++FI+AA+ R EALDH+L  GPPGLGKTTLA +VA E+GVN
Sbjct: 25  IRPKKLADYQGQDHVRDQMEIFIKAAQQRQEALDHLLIFGPPGLGKTTLANIVANEMGVN 84

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS +VEE+LYPAMED+QLD+M+GEG
Sbjct: 85  IRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQLDIMIGEG 144

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  RL +Y + DL+ IVQR A   GL
Sbjct: 145 PAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEYYNVADLQNIVQRSAHCLGL 204

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
           ++  + A E+A R+RGTPRIA RLLRRVRD+AEV     I  + AD AL  L +D  GFD
Sbjct: 205 SMDSDGALEVARRARGTPRIANRLLRRVRDYAEVKGDGHICAKTADKALDMLDVDHQGFD 264

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  I   F GGPVG++ ++A + E +D IED++EP++IQQG++QRTPRGR+   
Sbjct: 265 YMDRKLLLAIMEKFSGGPVGLDNLAAAIGEEKDTIEDVLEPFLIQQGYLQRTPRGRIATD 324

Query: 322 IAWQHLGID 330
            A+ H G++
Sbjct: 325 RAYLHFGLE 333


>gi|164687537|ref|ZP_02211565.1| hypothetical protein CLOBAR_01178 [Clostridium bartlettii DSM
           16795]
 gi|164603311|gb|EDQ96776.1| hypothetical protein CLOBAR_01178 [Clostridium bartlettii DSM
           16795]
          Length = 338

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 181/333 (54%), Positives = 244/333 (73%), Gaps = 1/333 (0%)

Query: 3   DREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           D   L+S ++  ED D  + LRP+ L ++ GQ +    L++FIEAAK+R E LDHVL  G
Sbjct: 6   DENRLISSSMKVEDNDTEVSLRPKNLSDYLGQEKVKEQLEIFIEAAKSRNEPLDHVLLYG 65

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+GVN R TSGP I +AGDLAALLTNLE+ DVLFIDEIHR++  V
Sbjct: 66  PPGLGKTTLASIIANEMGVNLRITSGPAIERAGDLAALLTNLEENDVLFIDEIHRINRSV 125

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMED+ +D+++G+GPSARS++++L +FTLI ATT+ G+LTNPL+DRFG+  +L+
Sbjct: 126 EEVLYPAMEDYCIDIIIGKGPSARSIRLDLPKFTLIGATTKAGMLTNPLRDRFGVICKLD 185

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y +++L  I  R A L    +    A EIA RSRGTPRIA RLL+RVRD+A+V     I
Sbjct: 186 YYTVDELAQISMRSANLLDADINLNGATEIARRSRGTPRIANRLLKRVRDYAQVKADGNI 245

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T E+A  AL  L +D +G D +D + L  I   FGGGPVG++T++A + E R+ IED+ E
Sbjct: 246 TDEVASNALELLGVDSLGLDDVDEKLLLTIIHKFGGGPVGLDTLAASIGEDRNTIEDVYE 305

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           PY++Q GFI R PRGR+ MP A++HL I+ P +
Sbjct: 306 PYLLQLGFINRGPRGRIAMPKAYEHLNIEYPKK 338


>gi|145634689|ref|ZP_01790398.1| Holliday junction DNA helicase RuvB [Haemophilus influenzae PittAA]
 gi|145268234|gb|EDK08229.1| Holliday junction DNA helicase RuvB [Haemophilus influenzae PittAA]
          Length = 335

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 182/315 (57%), Positives = 236/315 (74%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           ED     +RP+ L ++ GQ +    + +FI+AAK R +ALDH+L  GPPGLGKTTLA +V
Sbjct: 16  EDVIDRAIRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIV 75

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS  +EE+LYPAMED+QL
Sbjct: 76  ANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQL 135

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D+M+GEGP+ARS+K++L  FTL+ ATTR G LT+PL+DRFGI  RL FY +EDL +IV R
Sbjct: 136 DIMIGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVAR 195

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A    L +  +AA E+A RSRGTPRIA RLLRRVRD+A+V +   I+ E+A  AL  L 
Sbjct: 196 SADCLNLELEQQAAFEVARRSRGTPRIANRLLRRVRDYADVRNGGVISVEVAKQALSMLD 255

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D  GFD LD + L+ +   F GGPVG++ ++A + E RD IED++EPY+IQQGF+QRTP
Sbjct: 256 VDDAGFDYLDRKLLSAVIERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTP 315

Query: 315 RGRLLMPIAWQHLGI 329
           RGR+     ++H G+
Sbjct: 316 RGRIATSQTYRHFGL 330


>gi|329120083|ref|ZP_08248753.1| crossover junction ATP-dependent DNA helicase RuvB [Neisseria
           bacilliformis ATCC BAA-1200]
 gi|327463614|gb|EGF09932.1| crossover junction ATP-dependent DNA helicase RuvB [Neisseria
           bacilliformis ATCC BAA-1200]
          Length = 349

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 196/319 (61%), Positives = 237/319 (74%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           SQE+     LRP+ L ++ GQ +A   L +FI AAK R EALDH L  GPPGLGKTTLA 
Sbjct: 30  SQEEQLERALRPKFLADYIGQHKAKEQLAIFIAAAKKRGEALDHTLLFGPPGLGKTTLAH 89

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++A+ELGVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+
Sbjct: 90  IIAKELGVNLRQTSGPVLERAGDLAALLTNLEPHDVLFIDEIHRLSPVVEEILYPALEDY 149

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           QLD+M+GEGP+ARSVKI+L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  +DL TIV
Sbjct: 150 QLDIMIGEGPAARSVKIDLPPFTLVGATTRAGMLTNPLRDRFGIVARLEFYGHDDLATIV 209

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R A L  L +  E A EIA RSRGTPRIA RLLRRVRD+AEV  +  I  + ADAAL  
Sbjct: 210 SRSAGLLQLDLAAEGALEIARRSRGTPRIANRLLRRVRDYAEVKGSGRIAADTADAALTL 269

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D+ G D +D ++L  +   FGGGPVG++ I+A + E  D IED+IEPY+IQQGF+QR
Sbjct: 270 LDVDQAGLDMMDRKFLEAVLHKFGGGPVGLDNIAAAIGESADTIEDVIEPYLIQQGFLQR 329

Query: 313 TPRGRLLMPIAWQHLGIDI 331
           TPRGR    I   H G+ +
Sbjct: 330 TPRGRTATEICRLHFGLPV 348


>gi|255658188|ref|ZP_05403597.1| holliday junction DNA helicase RuvB [Mitsuokella multacida DSM
           20544]
 gi|260849496|gb|EEX69503.1| holliday junction DNA helicase RuvB [Mitsuokella multacida DSM
           20544]
          Length = 339

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 183/313 (58%), Positives = 236/313 (75%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPR L E+ GQ +  +NL +FI+AA +R EALDHVL  GPPGLGKTTLA ++A ELGVN
Sbjct: 27  LRPRKLNEYIGQEKVKANLSIFIQAALSRGEALDHVLLYGPPGLGKTTLAGIIANELGVN 86

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           FR TSGP I ++GDLAALLTNL++ DVLFIDEIHRLS  VEE+LY AMEDF LD+++G+G
Sbjct: 87  FRQTSGPAIERSGDLAALLTNLQEHDVLFIDEIHRLSHSVEEVLYSAMEDFALDIIIGKG 146

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSARS++++++ FTLI ATT+ G L  PL+DRFG+  RL +Y  + L  I++R A++  +
Sbjct: 147 PSARSIRLDIAPFTLIGATTKAGALAAPLRDRFGVISRLEYYTPDALVHIIKRAAEILDI 206

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
           A+ DE A EIA RSRGTPR+A RLL+RVRD A++  + TIT EIAD AL  L +DK G D
Sbjct: 207 AIEDEGALEIARRSRGTPRVANRLLKRVRDVAQIEGSGTITNEIADKALRMLEVDKAGLD 266

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             D R L  +   F GGPVG++T++A +SE RD IED+ EPY+IQ GFI RTPRGR++  
Sbjct: 267 HTDRRMLRTMIEKFAGGPVGLDTLAAAISEARDTIEDVYEPYLIQLGFINRTPRGRIVTE 326

Query: 322 IAWQHLGIDIPHR 334
             ++HLGI  P +
Sbjct: 327 AGYRHLGIPYPEK 339


>gi|54297489|ref|YP_123858.1| Holliday junction DNA helicase RuvB [Legionella pneumophila str.
           Paris]
 gi|59800220|sp|Q5X4Y6|RUVB_LEGPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|172047900|sp|A5IC73|RUVB_LEGPC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|53751274|emb|CAH12685.1| hypothetical protein lpp1534 [Legionella pneumophila str. Paris]
          Length = 336

 Score =  379 bits (973), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 182/320 (56%), Positives = 238/320 (74%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           S+++  EDA    +RP +L E+ GQ    S +++FI AA+ R + LDHVL  GPPGLGKT
Sbjct: 10  SQSIVSEDAMDRAIRPLSLSEYVGQDSVSSQMQIFINAARKRNDPLDHVLIFGPPGLGKT 69

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           TLA ++A E+GVN R TSGPVI +AGD+AA+LTNL+  DVLFIDEIHRLS ++EEILYPA
Sbjct: 70  TLANIIAHEMGVNIRQTSGPVIERAGDIAAILTNLQQNDVLFIDEIHRLSPVIEEILYPA 129

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           MED++LD+M+GEGP+ARS+K+ L  FTLI ATTR GLLT+PL+DRFGI  RL +Y ++ L
Sbjct: 130 MEDYKLDIMIGEGPAARSIKLELPPFTLIGATTRAGLLTSPLRDRFGIVQRLEYYSVDSL 189

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             IV R A L G+    E A EIA+RSRGTPRIA RLLRRVRD++EV     IT ++A  
Sbjct: 190 TKIVARSAHLLGVPTKPEGAREIALRSRGTPRIANRLLRRVRDYSEVKGNGIITVDMAQQ 249

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL  L +D+ GFD +D + L  +  +F GGPVGI++I+A + E +  IED++EP++IQQG
Sbjct: 250 ALEMLEVDQHGFDLMDRKLLLAVIEHFNGGPVGIDSIAAAIGEEKGTIEDVLEPFLIQQG 309

Query: 309 FIQRTPRGRLLMPIAWQHLG 328
           F+ RTPRGR+    A+QH G
Sbjct: 310 FLMRTPRGRIATSKAYQHFG 329


>gi|190575567|ref|YP_001973412.1| Holliday junction DNA helicase RuvB [Stenotrophomonas maltophilia
           K279a]
 gi|229484900|sp|B2FRN4|RUVB_STRMK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|190013489|emb|CAQ47124.1| putative Holliday junction DNA helicase [Stenotrophomonas
           maltophilia K279a]
          Length = 346

 Score =  379 bits (973), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 187/316 (59%), Positives = 239/316 (75%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           ++DA  + +RP+ L ++ GQV     ++++I+AAK R +ALDHVL  GPPGLGKTTL+ V
Sbjct: 14  EDDAADASIRPKRLADYLGQVPVREQMEIYIQAAKGRGDALDHVLIFGPPGLGKTTLSHV 73

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +A ELGV  R TSGPVI KAGDLAALLTNL+  DVLFIDEIHRLS +VEE+LYPAMEDFQ
Sbjct: 74  IANELGVALRVTSGPVIEKAGDLAALLTNLQPHDVLFIDEIHRLSPVVEEVLYPAMEDFQ 133

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           +D+M+GEGP+ARS+KI+L  FTLI ATTR GLLT PL+DRFGI  RL FY +E+L  IV+
Sbjct: 134 IDIMIGEGPAARSIKIDLPPFTLIGATTRAGLLTAPLRDRFGIVQRLEFYSVEELTRIVR 193

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A + G+  T + A EIA R+RGTPRIA RLLRRVRD+A+V     I   +A AA+  L
Sbjct: 194 RSASILGIDCTADGAGEIARRARGTPRIANRLLRRVRDYAQVKAGGHIDEPVAQAAMKML 253

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D  GFD+LD R L  +   F GGPVGIE+++A LSE R  +ED++EPY+IQQGF+ RT
Sbjct: 254 KVDPEGFDELDRRLLKTMVDYFDGGPVGIESLAAALSEERGTLEDVVEPYLIQQGFLVRT 313

Query: 314 PRGRLLMPIAWQHLGI 329
            RGR+    A++H+G+
Sbjct: 314 ARGRMATHKAYRHMGL 329


>gi|104783072|ref|YP_609570.1| Holliday junction DNA helicase RuvB [Pseudomonas entomophila L48]
 gi|123255381|sp|Q1I6E9|RUVB_PSEE4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|95112059|emb|CAK16786.1| Holliday junction helicase, subunit B [Pseudomonas entomophila L48]
          Length = 348

 Score =  379 bits (973), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 186/321 (57%), Positives = 240/321 (74%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           +E+     +RP  L+E+ GQ      + +FI+AA+ R E+LDH L  GPPGLGKTTLA +
Sbjct: 15  REEVQDRAIRPLRLDEYIGQPVVREQMALFIQAARGRNESLDHTLIFGPPGLGKTTLANI 74

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +A+E+GV+ +STSGP++ + GDLAA+LTNLE  DVLFIDEIHRLS +VEE+LYPAMEDFQ
Sbjct: 75  IAQEMGVSVKSTSGPILERPGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDFQ 134

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           LD+M+GEGP+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  +DL TIV 
Sbjct: 135 LDIMIGEGPAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQRLEFYSNKDLATIVS 194

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A + GL + D+ A EIA R+RGTPRIA RLLRRVRDFAEV     IT+ +AD AL  L
Sbjct: 195 RSAGILGLPMDDKGAFEIARRARGTPRIANRLLRRVRDFAEVRGKGEITKAVADMALNLL 254

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D+ GFD  D R L  +   F GGPVG++ I+A + E R  IED++EPY+IQQG+I RT
Sbjct: 255 DVDERGFDHSDRRLLLTMIEKFDGGPVGLDNIAAAIGEERHTIEDVLEPYLIQQGYIMRT 314

Query: 314 PRGRLLMPIAWQHLGIDIPHR 334
           PRGR++   A+ H G++IP R
Sbjct: 315 PRGRVVTRHAYLHFGLNIPGR 335


>gi|60407080|sp|Q5ZV64|RUVB_LEGPH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
          Length = 336

 Score =  379 bits (973), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 182/320 (56%), Positives = 238/320 (74%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           S+++  EDA    +RP +L E+ GQ    S +++FI AA+ R + LDHVL  GPPGLGKT
Sbjct: 10  SQSIVSEDAMDRAIRPLSLSEYVGQDSVSSQMQIFINAARKRNDPLDHVLIFGPPGLGKT 69

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           TLA ++A E+GVN R TSGPVI +AGD+AA+LTNL+  DVLFIDEIHRLS ++EEILYPA
Sbjct: 70  TLANIIAHEMGVNIRQTSGPVIERAGDIAAILTNLQQNDVLFIDEIHRLSPVIEEILYPA 129

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           MED++LD+M+GEGP+ARS+K+ L  FTLI ATTR GLLT+PL+DRFGI  RL +Y ++ L
Sbjct: 130 MEDYKLDIMIGEGPAARSIKLELPPFTLIGATTRAGLLTSPLRDRFGIVQRLEYYSVDSL 189

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             IV R A L G+    E A EIA+RSRGTPRIA RLLRRVRD++EV     IT ++A  
Sbjct: 190 TQIVARSAHLLGVPTKPEGAREIALRSRGTPRIANRLLRRVRDYSEVKGNGIITVDMAQQ 249

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL  L +D+ GFD +D + L  +  +F GGPVGI++I+A + E +  IED++EP++IQQG
Sbjct: 250 ALEMLEVDQHGFDLMDRKLLLAVIEHFNGGPVGIDSIAAAIGEEKGTIEDVLEPFLIQQG 309

Query: 309 FIQRTPRGRLLMPIAWQHLG 328
           F+ RTPRGR+    A+QH G
Sbjct: 310 FLMRTPRGRIATSKAYQHFG 329


>gi|52841806|ref|YP_095605.1| Holliday junction DNA helicase RuvB [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52628917|gb|AAU27658.1| Holliday junction DNA helicase RuvB [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 343

 Score =  379 bits (973), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 182/320 (56%), Positives = 238/320 (74%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           S+++  EDA    +RP +L E+ GQ    S +++FI AA+ R + LDHVL  GPPGLGKT
Sbjct: 17  SQSIVSEDAMDRAIRPLSLSEYVGQDSVSSQMQIFINAARKRNDPLDHVLIFGPPGLGKT 76

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           TLA ++A E+GVN R TSGPVI +AGD+AA+LTNL+  DVLFIDEIHRLS ++EEILYPA
Sbjct: 77  TLANIIAHEMGVNIRQTSGPVIERAGDIAAILTNLQQNDVLFIDEIHRLSPVIEEILYPA 136

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           MED++LD+M+GEGP+ARS+K+ L  FTLI ATTR GLLT+PL+DRFGI  RL +Y ++ L
Sbjct: 137 MEDYKLDIMIGEGPAARSIKLELPPFTLIGATTRAGLLTSPLRDRFGIVQRLEYYSVDSL 196

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             IV R A L G+    E A EIA+RSRGTPRIA RLLRRVRD++EV     IT ++A  
Sbjct: 197 TQIVARSAHLLGVPTKPEGAREIALRSRGTPRIANRLLRRVRDYSEVKGNGIITVDMAQQ 256

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL  L +D+ GFD +D + L  +  +F GGPVGI++I+A + E +  IED++EP++IQQG
Sbjct: 257 ALEMLEVDQHGFDLMDRKLLLAVIEHFNGGPVGIDSIAAAIGEEKGTIEDVLEPFLIQQG 316

Query: 309 FIQRTPRGRLLMPIAWQHLG 328
           F+ RTPRGR+    A+QH G
Sbjct: 317 FLMRTPRGRIATSKAYQHFG 336


>gi|256823070|ref|YP_003147033.1| Holliday junction DNA helicase RuvB [Kangiella koreensis DSM 16069]
 gi|256796609|gb|ACV27265.1| Holliday junction DNA helicase RuvB [Kangiella koreensis DSM 16069]
          Length = 339

 Score =  379 bits (973), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 182/308 (59%), Positives = 236/308 (76%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP TL E+ GQ +    +++F+ AAK R EALDHVL  GPPGLGKTTL+ ++A E+GV 
Sbjct: 23  IRPTTLGEYVGQEKVREQMEIFLGAAKKRQEALDHVLIFGPPGLGKTTLSNIIANEMGVG 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS  +EE+LYPAMED+QLD+M+GEG
Sbjct: 83  IKHTSGPVLEKAGDLAAMLTNLEPNDVLFIDEIHRLSPHIEEVLYPAMEDYQLDIMIGEG 142

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+KI+L  FTL+ ATTR GLLT+PL+DRFGI  RL FY ++DL  IV R A++  L
Sbjct: 143 PAARSIKIDLPPFTLVGATTRAGLLTSPLRDRFGIVQRLEFYNLKDLTHIVMRSARILDL 202

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + ++ A EIA RSRGTPRIA RLLRRVRD+AE+     IT++I+D AL  L +D  GFD
Sbjct: 203 PIEEKGALEIARRSRGTPRIANRLLRRVRDYAEIKSDGVITQDISDRALDMLDVDHKGFD 262

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  I   F GGPVG++T++A + E RD I++++EP++IQQGFIQRTPRGR+   
Sbjct: 263 MMDRKLLLTIIEKFAGGPVGLDTLAAAIGEERDTIDEVLEPFLIQQGFIQRTPRGRIATK 322

Query: 322 IAWQHLGI 329
           +A+QH  I
Sbjct: 323 LAYQHFEI 330


>gi|33598087|ref|NP_885730.1| Holliday junction DNA helicase B [Bordetella parapertussis 12822]
 gi|44888434|sp|Q7W4T6|RUVB_BORPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|33566645|emb|CAE38855.1| holliday junction DNA helicase [Bordetella parapertussis]
          Length = 357

 Score =  379 bits (973), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 183/311 (58%), Positives = 230/311 (73%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ LEE+ GQ  A   L++FI AA+ R EALDHVL  GPPGLGKTTLA ++A E+GV 
Sbjct: 34  LRPKALEEYVGQQRAREQLEIFIAAARKRGEALDHVLLFGPPGLGKTTLAHIIAHEMGVQ 93

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGPV+ + GDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+EDFQ+D+++GEG
Sbjct: 94  LRQTSGPVLERPGDLAALLTNLERNDVLFIDEIHRLSPVVEEILYPALEDFQIDILIGEG 153

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  ++L  IV R A L   
Sbjct: 154 PAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYNTDELARIVTRSASLLNA 213

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T + A E+A RSRGTPRIA RLLRRVRD+A+V     I ++ A  AL  L +D  G D
Sbjct: 214 DITADGAHEVARRSRGTPRIANRLLRRVRDYAQVKAHGVIDQDAAGRALAMLDVDPQGLD 273

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  I   F GGPVG+++++A + E RD IED+IEPY+IQ G++QRTPRGR    
Sbjct: 274 VMDRKLLEAIVHKFDGGPVGVDSLAAAIGEERDTIEDVIEPYLIQHGYLQRTPRGRTATL 333

Query: 322 IAWQHLGIDIP 332
             W+HLG++ P
Sbjct: 334 TTWRHLGLNPP 344


>gi|226945718|ref|YP_002800791.1| Holliday junction DNA helicase RuvB [Azotobacter vinelandii DJ]
 gi|259495660|sp|C1DRF8|RUVB_AZOVD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|226720645|gb|ACO79816.1| holliday junction DNA helicase RuvB [Azotobacter vinelandii DJ]
          Length = 352

 Score =  379 bits (973), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 185/313 (59%), Positives = 237/313 (75%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  L E+ GQ      +++FI+AA+ R EALDH L  GPPGLGKTTLA ++A+E+GV+
Sbjct: 23  IRPLRLAEYIGQPVVREQMELFIQAARGRREALDHTLIFGPPGLGKTTLANIIAQEMGVS 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            +STSGPV+ + GDLAALLTNLE  DVLF+DEIHRLS +VEE+LYPAMEDFQLD+M+GEG
Sbjct: 83  LKSTSGPVLERPGDLAALLTNLESGDVLFVDEIHRLSPVVEEVLYPAMEDFQLDIMIGEG 142

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY + DL TIV R A + GL
Sbjct: 143 PAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQRLEFYSVADLTTIVGRSAAILGL 202

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
               E A EIA R+RGTPRIA RLLRRVRDFA+V     ITR+IAD AL  L +D+ G D
Sbjct: 203 PTDAEGAFEIARRARGTPRIANRLLRRVRDFAQVRGEGRITRQIADLALNLLDVDEHGLD 262

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             D R L  +   F GGPVG+++++A +SE R  IED++EPY+IQQG++ RTPRGR++  
Sbjct: 263 HQDRRLLLTLIEKFDGGPVGVDSLAAAISEERHTIEDVLEPYLIQQGYMMRTPRGRVVTR 322

Query: 322 IAWQHLGIDIPHR 334
            A+ H G+++P R
Sbjct: 323 HAYLHFGLNLPAR 335


>gi|261493368|ref|ZP_05989894.1| crossover junction endonuclease RuvB [Mannheimia haemolytica
           serotype A2 str. BOVINE]
 gi|261496634|ref|ZP_05993014.1| crossover junction endonuclease RuvB [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261307837|gb|EEY09160.1| crossover junction endonuclease RuvB [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261311012|gb|EEY12189.1| crossover junction endonuclease RuvB [Mannheimia haemolytica
           serotype A2 str. BOVINE]
          Length = 334

 Score =  379 bits (973), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 186/330 (56%), Positives = 246/330 (74%), Gaps = 1/330 (0%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + ++S +  +E+  I   +RP+ L ++ GQ      +++FI+AAK R EALDH+L 
Sbjct: 1   MIEADRIISASPKREEEVIDRAIRPKLLADYVGQPSVRDQMEIFIKAAKLREEALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPYDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            +EE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ ATTR G LT+PL+DRFGI  R
Sbjct: 121 AIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY ++DL  IV+R A    L ++ + A E+A RSRGTPRIA RLLRRVRD+A+V +  
Sbjct: 181 LEFYSVDDLTLIVKRSADCLNLNLSADGAYEVARRSRGTPRIANRLLRRVRDYADVRNNG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT +IA  AL  L +D  GFD +D++ L  I   F GGPVG++ ++A + E RD IED+
Sbjct: 241 IITSDIAKQALAMLDVDSEGFDFMDIKLLQAIVERFDGGPVGLDNLAAAIGEERDTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           +EPY+IQQGF+QRTPRGR+     + HLGI
Sbjct: 301 LEPYLIQQGFLQRTPRGRIATSRTYAHLGI 330


>gi|238898993|ref|YP_002924675.1| Holliday junction helicase, subunit B [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
 gi|259495670|sp|C4K7I4|RUVB_HAMD5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|229466753|gb|ACQ68527.1| Holliday junction helicase, subunit B [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
          Length = 333

 Score =  379 bits (973), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 190/329 (57%), Positives = 242/329 (73%), Gaps = 2/329 (0%)

Query: 1   MMDREGLLSRNVSQEDADI--SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M++ + L+S +V  E+  +    +RP+ L+E+ GQ      +++FI+AAK R +ALDH+L
Sbjct: 1   MIEIDRLVSTDVLNENEALVDRAIRPKRLDEYVGQSHVRDQMQIFIQAAKQRGDALDHLL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAALLT+LE RD LFIDEIHRLS
Sbjct: 61  IFGPPGLGKTTLANIVAHEMGVNLRTTSGPVLEKAGDLAALLTHLEPRDALFIDEIHRLS 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            +VEEILYPAMED+QLD+M+GEGP ARS+K++L  FTLI ATTR G LT+PL+DRFGI  
Sbjct: 121 PVVEEILYPAMEDYQLDIMIGEGPGARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQ 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           RL FY + DL+ IV R A+   L +T   A ++A+RSRGTPRI  RLLRRVRDFAEV   
Sbjct: 181 RLEFYSVPDLEHIVSRSARCLQLPLTKNGAHQLALRSRGTPRIINRLLRRVRDFAEVKGE 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             I  EIA  AL  L +DK G D +D + L  I   F GGPVG++ ++A + E R+ IED
Sbjct: 241 GKINTEIAIKALEMLNVDKEGLDYMDSKLLLAIIEKFQGGPVGLDNLAAAIGEERETIED 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHL 327
           ++EPY+IQQGFIQRTPRGR+    A+QH 
Sbjct: 301 VLEPYLIQQGFIQRTPRGRIATQHAYQHF 329


>gi|308095082|ref|ZP_05903319.2| holliday junction DNA helicase RuvB [Vibrio parahaemolyticus
           Peru-466]
 gi|308087266|gb|EFO36961.1| holliday junction DNA helicase RuvB [Vibrio parahaemolyticus
           Peru-466]
          Length = 305

 Score =  379 bits (972), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 181/304 (59%), Positives = 235/304 (77%)

Query: 27  LEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTS 86
           + ++ GQ      +++FI+AA+ R+EALDH+L  GPPGLGKTTLA +VA E+ VN R+TS
Sbjct: 1   MADYQGQDHVRDQMEIFIKAAQLRSEALDHLLIFGPPGLGKTTLANIVANEMEVNIRTTS 60

Query: 87  GPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARS 146
           GPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS +VEE+LYPAMED+QLD+M+GEGP+ARS
Sbjct: 61  GPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQLDIMIGEGPAARS 120

Query: 147 VKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDE 206
           +KI+L  FTLI ATTR G LT+PL+DRFGI  RL +Y+++DL+ IVQR A   GL++  E
Sbjct: 121 IKIDLPPFTLIGATTRAGSLTSPLRDRFGITQRLEYYKVQDLQNIVQRSADCLGLSMEPE 180

Query: 207 AACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLR 266
            A E+A R+RGTPRIA RLLRRVRD+AEV     I  ++AD AL  L +D  GFD +D +
Sbjct: 181 GALEVARRARGTPRIANRLLRRVRDYAEVKGNGHICADVADKALNMLDVDAQGFDYMDRK 240

Query: 267 YLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQH 326
            L  I   FGGGPVG++ ++A + E +D IED++EPY+IQQG++QRTPRGR+    A+ H
Sbjct: 241 LLLAIMEKFGGGPVGLDNMAAAIGEEKDTIEDVLEPYLIQQGYLQRTPRGRIATDRAYLH 300

Query: 327 LGID 330
            GI+
Sbjct: 301 FGIE 304


>gi|304317015|ref|YP_003852160.1| Holliday junction DNA helicase RuvB [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778517|gb|ADL69076.1| Holliday junction DNA helicase RuvB [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 331

 Score =  379 bits (972), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 183/333 (54%), Positives = 242/333 (72%), Gaps = 2/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M DR  +L++N + EDA    LRP+ L E+ GQ +    LK++IEAAK R E LDHVL  
Sbjct: 1   MEDR--ILTQNFTPEDASEYSLRPKRLSEYIGQTKIKEELKIYIEAAKMRNEPLDHVLLF 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA +++ E+GV  R TSGP I +AGDLAA+LTNL++ D+LFIDEIHRL+  
Sbjct: 59  GPPGLGKTTLANIISNEMGVGIRITSGPAIERAGDLAAILTNLQENDILFIDEIHRLNRS 118

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILYPAMEDF+LD+++G+GPSARS+++NL  FTLI ATTR GL+T+PL+DRFG+ +RL
Sbjct: 119 VEEILYPAMEDFELDIIIGKGPSARSLRLNLPHFTLIGATTRAGLMTSPLRDRFGVIMRL 178

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY + DL  I++R + +  + + DEAA E+  RSRGTPRIA RLL+RVRDFA+V     
Sbjct: 179 EFYSVNDLSEIIKRSSAILNIGINDEAAYELGRRSRGTPRIANRLLKRVRDFAQVKGNGF 238

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I  E A  AL  L +D MG + +D + L  I   F GGPVGI+TI+A + E  + IED+ 
Sbjct: 239 IDFETAKDALDMLGVDDMGLEHIDRKMLKSIIEKFSGGPVGIDTIAASIGEESETIEDVY 298

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY++Q GF+ RTPRGR+   +A+++L   IP 
Sbjct: 299 EPYLMQIGFLNRTPRGRIATKLAYEYLNYSIPE 331


>gi|291288792|ref|YP_003505608.1| Holliday junction DNA helicase RuvB [Denitrovibrio acetiphilus DSM
           12809]
 gi|290885952|gb|ADD69652.1| Holliday junction DNA helicase RuvB [Denitrovibrio acetiphilus DSM
           12809]
          Length = 341

 Score =  379 bits (972), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 186/330 (56%), Positives = 248/330 (75%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           + + + +   ED   S +RP+  +++ GQ +   NLKVF++AAK R EALDH LF GPPG
Sbjct: 2   DNIFTDDKQPEDFQNSSIRPQGFDDYVGQKKVKENLKVFVQAAKQRGEALDHCLFHGPPG 61

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLA +++ ELGVN  STSGPVI KAGDLAA+LTN+++ DVLFIDEIHRL   VEEI
Sbjct: 62  LGKTTLANIISHELGVNINSTSGPVIDKAGDLAAILTNIQEGDVLFIDEIHRLHSNVEEI 121

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPAMEDF+LD+++G+GP+AR+VKI+L  FTLI ATTR GLLT+PL+DRFG+ +RL FY+
Sbjct: 122 LYPAMEDFKLDILIGQGPAARTVKIDLPPFTLIGATTRAGLLTSPLRDRFGMIMRLEFYD 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +++LK I+ RGA +    + D AA EIA RSRGTPRIA R+LRRVRDFA++ +   IT +
Sbjct: 182 VDELKHILLRGAGILEADIEDAAAEEIAGRSRGTPRIAHRILRRVRDFADILNNGQITLD 241

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +A  +L RL ID  G D  D   L  I   + GGPVG++T++A +SE RD IED+IEPY+
Sbjct: 242 MARESLRRLEIDTEGLDASDRNLLLSIIEKYEGGPVGVDTLAATMSEERDTIEDVIEPYL 301

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           I +GF+++TPRGR+    A++HL + +P R
Sbjct: 302 IYRGFVKKTPRGRMATAHAYEHLKMAVPGR 331


>gi|323706514|ref|ZP_08118073.1| Holliday junction DNA helicase RuvB [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323534144|gb|EGB23936.1| Holliday junction DNA helicase RuvB [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 331

 Score =  378 bits (971), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 180/329 (54%), Positives = 243/329 (73%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           E +L++N + EDA    LRP+ L E+ GQ++    LK++IEAAK R+E LDHVL  GPPG
Sbjct: 3   ERILTQNFTPEDASEYSLRPKRLSEYIGQMKIKEELKIYIEAAKMRSEPLDHVLLFGPPG 62

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLA +++ E+GV  R TSGP I +AGDLAA+LTNL++ D+LFIDEIHRL+  VEEI
Sbjct: 63  LGKTTLANIISNEMGVGIRITSGPAIERAGDLAAILTNLQENDILFIDEIHRLNRSVEEI 122

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPAMEDF+LD+++G+GPSARS++++L  FTLI ATTR GL+T+PL+DRFG+ +RL FY 
Sbjct: 123 LYPAMEDFELDIIIGKGPSARSLRLDLPHFTLIGATTRAGLMTSPLRDRFGVIMRLEFYS 182

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +E+L  I++R + +  + + DEAA E+  RSRGTPRIA RLL+RVRDFA+V     I   
Sbjct: 183 VEELSEIIKRSSAILNIGINDEAAYELGRRSRGTPRIANRLLKRVRDFAQVKGNGFIDFH 242

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           IA  AL  L +D MG + +D + L  I   F GGPVGI+TI+A + E  D IED+ EPY+
Sbjct: 243 IAKDALDMLGVDDMGLEHIDRKMLKSIIEKFSGGPVGIDTIAASIGEESDTIEDVYEPYL 302

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +Q GF+ RTPRGR+   +A+++L   +P 
Sbjct: 303 MQIGFLNRTPRGRIATKLAYEYLNYSLPE 331


>gi|54294380|ref|YP_126795.1| Holliday junction DNA helicase B [Legionella pneumophila str. Lens]
 gi|59800219|sp|Q5WWK4|RUVB_LEGPL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|53754212|emb|CAH15689.1| hypothetical protein lpl1449 [Legionella pneumophila str. Lens]
          Length = 336

 Score =  378 bits (971), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 181/320 (56%), Positives = 238/320 (74%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           S+++  EDA    +RP +L E+ GQ    S +++FI AA+ R + LDHVL  GPPGLGKT
Sbjct: 10  SQSIVSEDAMDRAIRPLSLSEYVGQDSVSSQMQIFINAARKRNDPLDHVLIFGPPGLGKT 69

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           TLA ++A E+GVN R TSGPVI +AGD+AA+LTNL+  DVLFIDEIHRLS ++EEILYPA
Sbjct: 70  TLANIIAHEMGVNIRQTSGPVIERAGDIAAILTNLQQNDVLFIDEIHRLSPVIEEILYPA 129

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           MED++LD+M+GEGP+ARS+K+ L  FTLI ATTR GLLT+PL+DRFGI  RL +Y ++ L
Sbjct: 130 MEDYKLDIMIGEGPAARSIKLELPPFTLIGATTRAGLLTSPLRDRFGIVQRLEYYSVDSL 189

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             IV R A L G+    E A E+A+RSRGTPRIA RLLRRVRD++EV     IT ++A  
Sbjct: 190 TQIVARSAHLLGVPTKPEGAREVALRSRGTPRIANRLLRRVRDYSEVKGNGIITVDMAQQ 249

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL  L +D+ GFD +D + L  +  +F GGPVGI++I+A + E +  IED++EP++IQQG
Sbjct: 250 ALEMLEVDQHGFDLMDRKLLLAVIEHFNGGPVGIDSIAAAIGEEKGTIEDVLEPFLIQQG 309

Query: 309 FIQRTPRGRLLMPIAWQHLG 328
           F+ RTPRGR+    A+QH G
Sbjct: 310 FLMRTPRGRIATSKAYQHFG 329


>gi|229846400|ref|ZP_04466508.1| Holliday junction DNA helicase B [Haemophilus influenzae 7P49H1]
 gi|229810493|gb|EEP46211.1| Holliday junction DNA helicase B [Haemophilus influenzae 7P49H1]
 gi|309972528|gb|ADO95729.1| Holliday junction resolvasome, ATPase subunit [Haemophilus
           influenzae R2846]
          Length = 335

 Score =  378 bits (971), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 182/315 (57%), Positives = 236/315 (74%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           ED     +RP+ L ++ GQ +    + +FI+AAK R +ALDH+L  GPPGLGKTTLA +V
Sbjct: 16  EDVIDRAIRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIV 75

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS  +EE+LYPAMED+QL
Sbjct: 76  ANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQL 135

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D+M+GEGP+ARS+K++L  FTL+ ATTR G LT+PL+DRFGI  RL FY +EDL +IV R
Sbjct: 136 DIMIGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVAR 195

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A    L +  +AA E+A RSRGTPRIA RLLRRVRD+A+V +   I+ E+A  AL  L 
Sbjct: 196 SAGCLNLELEQQAAFEVARRSRGTPRIANRLLRRVRDYADVRNGGVISVEVAKQALSMLD 255

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D  GFD LD + L+ +   F GGPVG++ ++A + E RD IED++EPY+IQQGF+QRTP
Sbjct: 256 VDDAGFDYLDRKLLSAVIERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTP 315

Query: 315 RGRLLMPIAWQHLGI 329
           RGR+     ++H G+
Sbjct: 316 RGRIATSQTYRHFGL 330


>gi|121603425|ref|YP_980754.1| Holliday junction DNA helicase RuvB [Polaromonas naphthalenivorans
           CJ2]
 gi|171769286|sp|A1VJK5|RUVB_POLNA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|120592394|gb|ABM35833.1| Holliday junction DNA helicase RuvB [Polaromonas naphthalenivorans
           CJ2]
          Length = 356

 Score =  378 bits (971), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 188/319 (58%), Positives = 237/319 (74%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           +E+A    LRP+  +++ GQ +A   L++FI AA  R EALDHVL  GPPGLGKTTL+ +
Sbjct: 28  KEEAIERALRPKLFDDYVGQTKAREQLEIFIGAANKRQEALDHVLLFGPPGLGKTTLSHI 87

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +A ELGVN RSTSGPV+ K  DLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+Q
Sbjct: 88  IAHELGVNMRSTSGPVLEKPKDLAALLTNLEKNDVLFIDEIHRLSPVVEEILYPALEDYQ 147

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           +D+M+GEGP+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  E+L  IV+
Sbjct: 148 IDIMIGEGPAARSIKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTPEELARIVK 207

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A L    +  E   EIA RSRGTPRIA RLLRRVRD+A+V    TIT +IA+ AL  L
Sbjct: 208 RSAGLLNAPMDAEGGFEIARRSRGTPRIANRLLRRVRDYADVKGNGTITLDIANRALAML 267

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D  GFD +D ++L  +   F GGPVG++ I+A + E    IED+IEPY+IQQGF+QRT
Sbjct: 268 DVDPQGFDLMDRKFLEAVILRFDGGPVGLDNIAASIGEESGTIEDVIEPYLIQQGFLQRT 327

Query: 314 PRGRLLMPIAWQHLGIDIP 332
           PRGR+    A++HLG+  P
Sbjct: 328 PRGRIATLAAYRHLGVAPP 346


>gi|218905615|ref|YP_002453449.1| Holliday junction DNA helicase RuvA [Bacillus cereus AH820]
 gi|218536299|gb|ACK88697.1| Holliday junction DNA helicase RuvA [Bacillus cereus AH820]
          Length = 541

 Score =  378 bits (971), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 189/333 (56%), Positives = 248/333 (74%), Gaps = 2/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           +MD E LLS   + EDAD+   LRP+TL ++ GQ +A  NL+VFIEAAK R E LDHVL 
Sbjct: 208 IMD-ERLLSGESAYEDADLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLL 266

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT+L+  DVLFIDEIHRL  
Sbjct: 267 YGPPGLGKTTLANIIANEMGVNVRTTSGPAIERPGDLAAVLTSLQPGDVLFIDEIHRLHR 326

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            +EE+LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTR G L+ PL+DRFG+  R
Sbjct: 327 SIEEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSR 386

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y ++ L  IV+R A++  + +   AA EIA R+RGTPRIA RLLRRVRDFA+V    
Sbjct: 387 LEYYTVDQLSAIVERTAEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRGNG 446

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           T+T EI   AL  L +DK+G D +D + L  I   F GGPVG+ET+SA + E    IED+
Sbjct: 447 TVTMEITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSATIGEESHTIEDV 506

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
            EPY++Q GF+QRTPRGR++ P+A++H G+++P
Sbjct: 507 YEPYLLQIGFLQRTPRGRIVTPLAYEHFGMEMP 539


>gi|33594304|ref|NP_881948.1| Holliday junction DNA helicase B [Bordetella pertussis Tohama I]
 gi|44888430|sp|Q7VTT6|RUVB_BORPE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|33564379|emb|CAE43684.1| holliday junction DNA helicase [Bordetella pertussis Tohama I]
 gi|332383715|gb|AEE68562.1| Holliday junction DNA helicase RuvB [Bordetella pertussis CS]
          Length = 357

 Score =  378 bits (971), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 183/311 (58%), Positives = 229/311 (73%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ LEE+ GQ  A   L++FI AA+ R EALDHVL  GPPGLGKTTLA ++A E+GV 
Sbjct: 34  LRPKALEEYVGQQRAREQLEIFIAAARKRGEALDHVLLFGPPGLGKTTLAHIIAHEMGVQ 93

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGPV+ + GDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+EDFQ+D+++GEG
Sbjct: 94  LRQTSGPVLERPGDLAALLTNLERNDVLFIDEIHRLSPVVEEILYPALEDFQIDILIGEG 153

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  ++L  IV R A L   
Sbjct: 154 PAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYNTDELARIVTRSASLLNA 213

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T + A E+A RSRGTPRIA RLLRRVRD+A+V     I ++ A  AL  L +D  G D
Sbjct: 214 DITADGAHEVARRSRGTPRIANRLLRRVRDYAQVKSHGVIDQDAAGRALAMLDVDPQGLD 273

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  I   F GGPVG+++++A + E RD IED+IEPY+IQ G++QRTPRGR    
Sbjct: 274 VMDRKLLEAIVHKFDGGPVGVDSLAAAIGEERDTIEDVIEPYLIQHGYLQRTPRGRTATL 333

Query: 322 IAWQHLGIDIP 332
             W+HLG+  P
Sbjct: 334 TTWRHLGLTPP 344


>gi|125972706|ref|YP_001036616.1| Holliday junction DNA helicase RuvB [Clostridium thermocellum ATCC
           27405]
 gi|256004865|ref|ZP_05429839.1| Holliday junction DNA helicase RuvB [Clostridium thermocellum DSM
           2360]
 gi|281416894|ref|ZP_06247914.1| Holliday junction DNA helicase RuvB [Clostridium thermocellum JW20]
 gi|166231487|sp|A3DBU4|RUVB_CLOTH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|125712931|gb|ABN51423.1| Holliday junction DNA helicase subunit RuvB [Clostridium
           thermocellum ATCC 27405]
 gi|255991175|gb|EEU01283.1| Holliday junction DNA helicase RuvB [Clostridium thermocellum DSM
           2360]
 gi|281408296|gb|EFB38554.1| Holliday junction DNA helicase RuvB [Clostridium thermocellum JW20]
 gi|316941058|gb|ADU75092.1| Holliday junction DNA helicase RuvB [Clostridium thermocellum DSM
           1313]
          Length = 330

 Score =  378 bits (971), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 187/329 (56%), Positives = 243/329 (73%), Gaps = 2/329 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M DR  L+   +S+ED D   LRPR   E+ GQ +   NL VFIEAAK R EALDHVL  
Sbjct: 1   MEDR--LVGCRLSEEDVDEVSLRPRKFGEYIGQTKVKENLMVFIEAAKKRNEALDHVLLY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A ELGVN R TSGP I K GDLAA+LTNL + DVLFIDEIHRL+  
Sbjct: 59  GPPGLGKTTLAGIIASELGVNLRITSGPAIEKPGDLAAILTNLGNFDVLFIDEIHRLNRS 118

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILYPAMED+ LD+++G+GPSARS++++L +FTLI ATTR GLLT+PL+DRFG+  +L
Sbjct: 119 VEEILYPAMEDYALDIIIGKGPSARSIRLDLPKFTLIGATTRAGLLTSPLRDRFGVINKL 178

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
             Y +E+L  IV+R A++  + + DEAA EIA R+RGTPR+A R+L+R+RDFA+V     
Sbjct: 179 ELYSVEELGQIVKRSARILNVGIEDEAAEEIARRARGTPRVANRILKRIRDFAQVKSDGF 238

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           IT+EIA   L  L +D++G D +D   L  I   FGGGPVG++T++A + E  D IED+ 
Sbjct: 239 ITKEIARTGLEALEVDEIGLDAVDRNLLMSIIEKFGGGPVGLDTLAATIGEEPDTIEDVY 298

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           EPY++Q GFI +TPRGR+   +A++H G+
Sbjct: 299 EPYLLQLGFINKTPRGRMATKLAYEHFGL 327


>gi|88800181|ref|ZP_01115749.1| Holliday junction DNA helicase RuvB [Reinekea sp. MED297]
 gi|88777027|gb|EAR08234.1| Holliday junction DNA helicase RuvB [Reinekea sp. MED297]
          Length = 338

 Score =  378 bits (970), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 180/308 (58%), Positives = 232/308 (75%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP TL E+ GQ      +++F+ AA+ R E LDH L  GPPGLGKTTLA ++A E+GVN
Sbjct: 24  IRPDTLAEYIGQPVVKEKMEIFLGAARKREEPLDHTLIFGPPGLGKTTLANIIANEMGVN 83

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            ++TSGPV+ KAGDLAA+LTNLE+ DVLFIDEIHRL+  VEE+LYPAMED+QLD+M+GEG
Sbjct: 84  IKTTSGPVLEKAGDLAAMLTNLEEGDVLFIDEIHRLAPNVEEVLYPAMEDYQLDIMIGEG 143

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+K+ L  FTL+ ATTR GLLT+PL+DRFGI  RL FY   DL  IV+R ++   +
Sbjct: 144 PAARSIKLELPPFTLVGATTRAGLLTSPLRDRFGIVERLEFYSTADLAEIVERSSRKLSI 203

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  E A EIA RSRGTPRIA RLLRRVRD+A+V H   +T  +ADAAL  L +D+ GFD
Sbjct: 204 EIDPEGAAEIARRSRGTPRIANRLLRRVRDYADVKHDGQVTAAVADAALNMLHVDRAGFD 263

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            LD R L  +   FGGGP G+E I+A +SE RD +ED++EPY+IQQG++ RTPRGR++  
Sbjct: 264 HLDRRVLLALIEKFGGGPAGVENIAAAISEERDTLEDVVEPYLIQQGYLIRTPRGRIVTD 323

Query: 322 IAWQHLGI 329
           +A+ H  +
Sbjct: 324 LAYLHFDL 331


>gi|300870481|ref|YP_003785352.1| Holliday junction DNA helicase RuvB [Brachyspira pilosicoli
           95/1000]
 gi|300688180|gb|ADK30851.1| holliday junction DNA helicase, RuvB [Brachyspira pilosicoli
           95/1000]
          Length = 344

 Score =  378 bits (970), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 181/333 (54%), Positives = 238/333 (71%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD+E + + N +  D + S +RP+   +F GQ    S LKVFI++AK R  +LDH+LF G
Sbjct: 1   MDKESITNSNENSYDVNNSSIRPKGFNDFIGQENIKSKLKVFIDSAKKRDVSLDHILFYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLAQ++A ELG N ++TS PVI + GDLA++LT L ++D+LFIDEIHRL  +V
Sbjct: 61  PPGLGKTTLAQIIAEELGSNIKATSAPVIERPGDLASILTTLGEKDILFIDEIHRLRTVV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMEDF +D+ VGEG SA+S ++ L +FTLI ATTR GLL+ PL DRFGI  RL 
Sbjct: 121 EEVLYSAMEDFFVDIKVGEGTSAKSFRVKLPKFTLIGATTRSGLLSTPLYDRFGIVERLE 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY  EDL  IV+R +K   + +TD AA  IA RSRGTPRI  RLLRRV DFA V+    I
Sbjct: 181 FYTNEDLADIVKRSSKFLNIDITDSAAISIASRSRGTPRIVNRLLRRVFDFATVSDVLKI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
             + A  +L +L +DK GF+ LD +YL  I +N+ GGPVG++TIS  LSE  + IED+IE
Sbjct: 241 DEKFASESLEKLGVDKNGFEALDKQYLDTIIKNYNGGPVGVDTISVSLSEQIETIEDVIE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           PY+IQ GFI+RTP+GR+    A+ +L I++ + 
Sbjct: 301 PYLIQSGFIKRTPKGRVATIKAYSYLNINVKNN 333


>gi|319775820|ref|YP_004138308.1| holliday junction DNA helicase RuvB [Haemophilus influenzae F3047]
 gi|329123664|ref|ZP_08252224.1| crossover junction ATP-dependent DNA helicase RuvB [Haemophilus
           aegyptius ATCC 11116]
 gi|317450411|emb|CBY86627.1| holliday junction DNA helicase RuvB [Haemophilus influenzae F3047]
 gi|327469863|gb|EGF15328.1| crossover junction ATP-dependent DNA helicase RuvB [Haemophilus
           aegyptius ATCC 11116]
          Length = 335

 Score =  378 bits (970), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 181/315 (57%), Positives = 236/315 (74%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           ED     +RP+ L ++ GQ +    + +FI+AAK R +ALDH+L  GPPGLGKTTLA +V
Sbjct: 16  EDVIDRAIRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIV 75

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS  +EE+LYPAMED+QL
Sbjct: 76  ANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQL 135

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D+M+GEGP+ARS+K++L  FTL+ ATTR G LT+PL+DRFGI  RL FY +EDL +IV R
Sbjct: 136 DIMIGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVAR 195

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A    L +  +AA E+A RSRGTPRIA RLLRRVRD+A+V +   I+ ++A  AL  L 
Sbjct: 196 SADCLNLELEQQAAFEVARRSRGTPRIANRLLRRVRDYADVRNGGVISVDVAKQALSMLD 255

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D  GFD LD + L+ +   F GGPVG++ ++A + E RD IED++EPY+IQQGF+QRTP
Sbjct: 256 VDDAGFDYLDRKLLSAVIERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTP 315

Query: 315 RGRLLMPIAWQHLGI 329
           RGR+     ++H G+
Sbjct: 316 RGRIATSQTYRHFGL 330


>gi|49187310|ref|YP_030562.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str.
           Sterne]
 gi|49181237|gb|AAT56613.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str.
           Sterne]
          Length = 336

 Score =  378 bits (970), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 189/333 (56%), Positives = 248/333 (74%), Gaps = 2/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           +MD E LLS   + EDAD+   LRP+TL ++ GQ +A  NL+VFIEAAK R E LDHVL 
Sbjct: 3   IMD-ERLLSGESAYEDADLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLL 61

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT+L+  DVLFIDEIHRL  
Sbjct: 62  YGPPGLGKTTLANIIANEMGVNVRTTSGPAIERPGDLAAVLTSLQPGDVLFIDEIHRLHR 121

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            +EE+LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTR G L+ PL+DRFG+  R
Sbjct: 122 SIEEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSR 181

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y ++ L  IV+R A++  + +   AA EIA R+RGTPRIA RLLRRVRDFA+V    
Sbjct: 182 LEYYTVDQLSAIVERTAEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRGNG 241

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           T+T EI   AL  L +DK+G D +D + L  I   F GGPVG+ET+SA + E    IED+
Sbjct: 242 TVTMEITQMALELLQVDKLGLDHIDHKLLLGIIEKFHGGPVGLETVSATIGEESHTIEDV 301

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
            EPY++Q GF+QRTPRGR++ P+A++H G+++P
Sbjct: 302 YEPYLLQIGFLQRTPRGRIVTPLAYEHFGMEMP 334


>gi|288940997|ref|YP_003443237.1| Holliday junction DNA helicase RuvB [Allochromatium vinosum DSM
           180]
 gi|288896369|gb|ADC62205.1| Holliday junction DNA helicase RuvB [Allochromatium vinosum DSM
           180]
          Length = 351

 Score =  378 bits (970), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 185/330 (56%), Positives = 241/330 (73%), Gaps = 1/330 (0%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M D + L++     +D  I   +RPR L ++ GQ      +++FI AA+ R EALDHVL 
Sbjct: 1   MNDPDRLITAEAGADDRAIDRAIRPRKLADYVGQPAVREQMEIFIGAARGRKEALDHVLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTL+ ++A E+ VN R TSGPV+ K GDLAALLTNL+  DVLF+DEIHRLS 
Sbjct: 61  FGPPGLGKTTLSHIIAHEMQVNLRQTSGPVLEKPGDLAALLTNLDPGDVLFVDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ ATTR GLLT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGLLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y  EDL  IVQR A + G+    + A EIA R+RGTPRIA RLLRRVRD+A+V    
Sbjct: 181 LEYYSAEDLTHIVQRSAGILGIEAEPDGAAEIARRARGTPRIANRLLRRVRDYAQVRGDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I+ EIAD AL  L +D +GFD +D R L+ +   F GGPVG+E+++A + E R  IED+
Sbjct: 241 RISAEIADRALSMLKVDALGFDHMDRRLLSAVIEKFDGGPVGVESLAAAIGEERGTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           +EP++IQQGF+ RTPRGR+    A+QH G+
Sbjct: 301 LEPFLIQQGFLMRTPRGRMATQSAYQHFGL 330


>gi|33602980|ref|NP_890540.1| Holliday junction DNA helicase B [Bordetella bronchiseptica RB50]
 gi|44888437|sp|Q7WGB3|RUVB_BORBR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|33568611|emb|CAE34369.1| holliday junction DNA helicase [Bordetella bronchiseptica RB50]
          Length = 357

 Score =  377 bits (969), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 183/311 (58%), Positives = 229/311 (73%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ LEE+ GQ  A   L++FI AA+ R EALDHVL  GPPGLGKTTLA ++A E+GV 
Sbjct: 34  LRPKALEEYVGQQRAREQLEIFIAAARKRGEALDHVLLFGPPGLGKTTLAHIIAHEMGVQ 93

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGPV+ + GDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+EDFQ+D+++GEG
Sbjct: 94  LRQTSGPVLERPGDLAALLTNLERNDVLFIDEIHRLSPVVEEILYPALEDFQIDILIGEG 153

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  ++L  IV R A L   
Sbjct: 154 PAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYNTDELARIVTRSASLLNA 213

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T + A E+A RSRGTPRIA RLLRRVRD+A+V     I ++ A  AL  L +D  G D
Sbjct: 214 DITADGAHEVARRSRGTPRIANRLLRRVRDYAQVKAHGVIDQDAAGRALAMLDVDPQGLD 273

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  I   F GGPVG+++++A + E RD IED+IEPY+IQ G++QRTPRGR    
Sbjct: 274 VMDRKLLEAIVHKFDGGPVGVDSLAAAIGEERDTIEDVIEPYLIQHGYLQRTPRGRTATL 333

Query: 322 IAWQHLGIDIP 332
             W+HLG+  P
Sbjct: 334 TTWRHLGLTPP 344


>gi|289422378|ref|ZP_06424224.1| holliday junction DNA helicase RuvB [Peptostreptococcus anaerobius
           653-L]
 gi|289157213|gb|EFD05832.1| holliday junction DNA helicase RuvB [Peptostreptococcus anaerobius
           653-L]
          Length = 338

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 181/333 (54%), Positives = 252/333 (75%), Gaps = 1/333 (0%)

Query: 2   MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD E +++  + +ED +I + LRP++L+++ GQ ++   L++FI+AA  R EALDHVL  
Sbjct: 1   MDEERIITSTMKEEDFEIENSLRPKSLDDYLGQEKSKEQLRIFIDAALNRNEALDHVLLY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A E+GVN R TSGP I +AGDLAA+LTNL++ DVLFIDEIHR++  
Sbjct: 61  GPPGLGKTTLAGIIANEMGVNLRITSGPAIERAGDLAAILTNLQENDVLFIDEIHRINRS 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMED  LD+++G+GPSARS++++L +FTLI ATTR G+LTNPL+DRFG+ ++L
Sbjct: 121 VEEVLYPAMEDNCLDIIIGKGPSARSIRLDLPKFTLIGATTRAGMLTNPLRDRFGVILKL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           ++Y  E+L  IV+R + + G  + DE A +IA RSRGTPRIA RLL+RVRDFA+V     
Sbjct: 181 DYYNEEELAEIVKRSSSILGAGIQDEGAIQIASRSRGTPRIANRLLKRVRDFAQVRADGQ 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           IT ++A  AL  + +D +G D +D + LT I   F GGPVG++T++A + E R+ IED+ 
Sbjct: 241 ITDDVAVDALDLIGVDSLGLDFVDNKLLTTIIDKFRGGPVGLDTLAASIGEDRNTIEDVY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY++Q GFI R PRGR+ MP A++HLG+  P 
Sbjct: 301 EPYLLQLGFINRAPRGRIAMPRAYEHLGMPYPQ 333


>gi|220935402|ref|YP_002514301.1| Holliday junction DNA helicase B [Thioalkalivibrio sp. HL-EbGR7]
 gi|254767448|sp|B8GUJ4|RUVB_THISH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|219996712|gb|ACL73314.1| Holliday junction DNA helicase B [Thioalkalivibrio sp. HL-EbGR7]
          Length = 353

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 187/330 (56%), Positives = 246/330 (74%), Gaps = 3/330 (0%)

Query: 5   EGLLSRNVSQED--ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           E L++   S++D  AD S+ RP+ L ++ GQ      +++FI AA+AR EALDHVL  GP
Sbjct: 3   ERLITPKGSRDDEAADFSI-RPQRLADYVGQPAVREQMEIFIGAARARGEALDHVLIFGP 61

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTL+ ++A ELGVN R +SGPV+ + GDLAALLTNLE RDVLF+DEIHRLS +VE
Sbjct: 62  PGLGKTTLSHIIAHELGVNLRHSSGPVLERPGDLAALLTNLEPRDVLFVDEIHRLSPVVE 121

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMEDFQLD+++GEGP+ARS+K++L  FTL+ ATTR GLLT+PL+DRFGI  RL F
Sbjct: 122 EVLYPAMEDFQLDIVIGEGPAARSIKLDLPPFTLVGATTRAGLLTSPLRDRFGIVQRLEF 181

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y ++DL  IVQR A + G+++    A EIA RSRGTPRIA RLLRRVRD+A++     IT
Sbjct: 182 YNVQDLTRIVQRAAGILGVSIEPAGAAEIARRSRGTPRIANRLLRRVRDYAQIKADGVIT 241

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            ++AD AL  L +D  GFD  D R L  +   F GGPVG+++++A + E R  IED++EP
Sbjct: 242 DQVADRALDLLDVDVQGFDAQDRRLLLAVIEKFDGGPVGVDSLAAAIGEERGTIEDVVEP 301

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           Y+IQQGF+ RTPRGR+    A+++ G+  P
Sbjct: 302 YLIQQGFLMRTPRGRMATSNAYRYFGLPAP 331


>gi|254428183|ref|ZP_05041890.1| Holliday junction DNA helicase RuvB [Alcanivorax sp. DG881]
 gi|196194352|gb|EDX89311.1| Holliday junction DNA helicase RuvB [Alcanivorax sp. DG881]
          Length = 342

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 185/335 (55%), Positives = 241/335 (71%), Gaps = 2/335 (0%)

Query: 2   MDREGLLSRNV--SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           MD E +++     S E+     +RP +L ++ GQ +    +++FI+AA+ R EALDH L 
Sbjct: 1   MDNERVITAAAVGSHEEQQDRAIRPASLADYHGQAKVSERMEIFIDAARGRREALDHTLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++ARE+G   +STSGPV+ KAGDLAA+LTNLE+ DVLF+DEIHRLS 
Sbjct: 61  FGPPGLGKTTLAHIIAREMGCELKSTSGPVLEKAGDLAAILTNLEEGDVLFVDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ ATTR GLLT PL+DRFGI  R
Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGLLTAPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY ++DL  IV R   +  + +    A E+A R+RGTPRIA RLLRRVRD+AEV    
Sbjct: 181 LEFYSVDDLSGIVSRACDILAIPIETAGAMEVARRARGTPRIANRLLRRVRDYAEVKGDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT +IA  AL  L +D  G D  D R L MI   F GGPVG+E+++A L+E    +E++
Sbjct: 241 RITEDIAQRALDMLEVDSCGLDGTDRRLLDMIMHKFDGGPVGLESLAAALNEDSGTLEEV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           +EPY+IQQGFIQRTPRGR +   AW+H G+  P +
Sbjct: 301 VEPYLIQQGFIQRTPRGRAVTNHAWRHFGLQRPRQ 335


>gi|113460416|ref|YP_718478.1| Holliday junction DNA helicase RuvB [Haemophilus somnus 129PT]
 gi|170717674|ref|YP_001783496.1| Holliday junction DNA helicase RuvB [Haemophilus somnus 2336]
 gi|123031154|sp|Q0I1M3|RUVB_HAES1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|189046035|sp|B0UVK4|RUVB_HAES2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|112822459|gb|ABI24548.1| Holliday junction DNA helicase subunit RuvB [Haemophilus somnus
           129PT]
 gi|168825803|gb|ACA31174.1| Holliday junction DNA helicase RuvB [Haemophilus somnus 2336]
          Length = 335

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 188/331 (56%), Positives = 244/331 (73%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + ++S N   +D  I   +RP+ L ++ GQ +    +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEVDRIVSANAKVDDEYIDRAIRPKLLSDYIGQPQVREQMEIFIQAAKLRQDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            +EE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 AIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY +EDL +IV R A    L +  EA  EIA RSRGTPRIA RLLRRVRD+A+V +  
Sbjct: 181 LEFYSVEDLASIVTRSAVCLQLEIDVEAGQEIACRSRGTPRIANRLLRRVRDYADVKNGG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT  IA  AL  L +D  GFD +D + L  I   F GGPVG++ ++A + E RD IED+
Sbjct: 241 KITALIAQEALKMLDVDLAGFDFMDRKLLQAIIERFDGGPVGLDNLAAAIGEERDTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           +EPY+IQQGF+QRTPRGR+     ++H G++
Sbjct: 301 LEPYLIQQGFLQRTPRGRIATSRTYRHFGLE 331


>gi|20807636|ref|NP_622807.1| Holliday junction DNA helicase B [Thermoanaerobacter tengcongensis
           MB4]
 gi|254478016|ref|ZP_05091400.1| Holliday junction DNA helicase RuvB [Carboxydibrachium pacificum
           DSM 12653]
 gi|22001975|sp|Q8RAN2|RUVB_THETN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|20516179|gb|AAM24411.1| Holliday junction resolvasome helicase subunit [Thermoanaerobacter
           tengcongensis MB4]
 gi|214036020|gb|EEB76710.1| Holliday junction DNA helicase RuvB [Carboxydibrachium pacificum
           DSM 12653]
          Length = 338

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 180/323 (55%), Positives = 244/323 (75%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           E +L++N +QEDA    LRPR L E+ GQ +    LK++IEAAK R E LDHVL  GPPG
Sbjct: 3   ERILTQNFTQEDATEYSLRPRWLSEYIGQEKIKQELKIYIEAAKKRGEPLDHVLLYGPPG 62

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLA V++ E+GV  + TSGP I ++GDLAA+LTNL++ D+LFIDEIHRL+  VEEI
Sbjct: 63  LGKTTLATVISNEMGVGIKITSGPAIERSGDLAAILTNLQENDILFIDEIHRLNRSVEEI 122

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPAMEDF+LD+++G+GPSARS++++L +FTLI ATTR  L+T+PL+ RFG+  RL++Y 
Sbjct: 123 LYPAMEDFELDIVIGKGPSARSIRLSLPKFTLIGATTRAALMTSPLRSRFGVINRLDYYS 182

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +E+LK I++R A +  + + ++AA EIA RSRGTPRIA RLL+RVRDFAEV     I   
Sbjct: 183 VEELKEIIKRSANILNIGIDEDAAFEIARRSRGTPRIANRLLKRVRDFAEVKGNGYIDYN 242

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
            A+ AL  L +D+MG +++D + L  I   FGGGPVGI+ I+A + E  D IED+ EPY+
Sbjct: 243 TANIALNMLGVDEMGLEEIDRKILIAIIEKFGGGPVGIDAIAASVGEDGDTIEDMYEPYL 302

Query: 305 IQQGFIQRTPRGRLLMPIAWQHL 327
           +Q GF+ RTPRGR++  +A+Q+L
Sbjct: 303 MQIGFLNRTPRGRVVTKLAYQYL 325


>gi|251798376|ref|YP_003013107.1| Holliday junction DNA helicase RuvB [Paenibacillus sp. JDR-2]
 gi|247546002|gb|ACT03021.1| Holliday junction DNA helicase RuvB [Paenibacillus sp. JDR-2]
          Length = 333

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 190/335 (56%), Positives = 248/335 (74%), Gaps = 3/335 (0%)

Query: 1   MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M DR  ++S N+  ++  + L LRPR L E+ GQ +A  NLK++I+AAK R EALDHVL 
Sbjct: 1   MEDR--IISANLMMDEQAMELSLRPRYLAEYIGQSKAKENLKIYIDAAKMRKEALDHVLL 58

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTL+ ++A ELGVN R+TSGP I + GDLAALLTNL++ DVLFIDEIHRL  
Sbjct: 59  YGPPGLGKTTLSNIIANELGVNLRTTSGPAIERPGDLAALLTNLQEGDVLFIDEIHRLHR 118

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEE+LYPAMEDF LD+M+G+GPSARSV+++L  FTLI ATTR GLL+ PL+DRFG+  R
Sbjct: 119 TVEEVLYPAMEDFALDIMIGKGPSARSVRLDLPPFTLIGATTRAGLLSAPLRDRFGVISR 178

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY +++L  IV R A++  +A+  EA+ EIAMRSRGTPRIA RLL+RVRD+A+V    
Sbjct: 179 LEFYTMDELAYIVSRSAEIFDIAIIGEASEEIAMRSRGTPRIANRLLKRVRDYAQVRGDG 238

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT EIA +AL    +D +G D +D + L  +   F G PVG++TI+A + E    IED+
Sbjct: 239 IITHEIAKSALELQQVDPVGLDSIDHKMLLAMMTTFAGRPVGLDTIAASIGEESQTIEDV 298

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
            EPY++Q GF+QRTPRGR+    A++HLG+ +P R
Sbjct: 299 YEPYLMQIGFLQRTPRGRIATDQAYRHLGMPVPER 333


>gi|148825409|ref|YP_001290162.1| Holliday junction DNA helicase RuvB [Haemophilus influenzae PittEE]
 gi|166231497|sp|A5UAH8|RUVB_HAEIE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|148715569|gb|ABQ97779.1| Holliday junction DNA helicase RuvB [Haemophilus influenzae PittEE]
          Length = 335

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 181/315 (57%), Positives = 236/315 (74%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           ED     +RP+ L ++ GQ +    + +FI+AAK R +ALDH+L  GPPGLGKTTLA +V
Sbjct: 16  EDVIDRAIRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIV 75

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS  +EE+LYPAMED+QL
Sbjct: 76  ANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQL 135

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D+M+GEGP+ARS+K++L  FTL+ ATTR G LT+PL+DRFGI  RL FY +EDL +IV R
Sbjct: 136 DIMIGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVAR 195

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A    L +  +AA E+A RSRGTPRIA RLLRRVRD+A+V +   I+ ++A  AL  L 
Sbjct: 196 SAGCLNLELEQQAAFEVARRSRGTPRIANRLLRRVRDYADVRNGGVISVDVAKQALSMLD 255

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D  GFD LD + L+ +   F GGPVG++ ++A + E RD IED++EPY+IQQGF+QRTP
Sbjct: 256 VDDAGFDYLDRKLLSAVIERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTP 315

Query: 315 RGRLLMPIAWQHLGI 329
           RGR+     ++H G+
Sbjct: 316 RGRIATSKTYRHFGL 330


>gi|30264490|ref|NP_846867.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str. Ames]
 gi|47529948|ref|YP_021297.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|65321786|ref|ZP_00394745.1| COG2255: Holliday junction resolvasome, helicase subunit [Bacillus
           anthracis str. A2012]
 gi|165871997|ref|ZP_02216638.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str. A0488]
 gi|167636202|ref|ZP_02394506.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str. A0442]
 gi|167640705|ref|ZP_02398965.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str. A0193]
 gi|170688711|ref|ZP_02879916.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str. A0465]
 gi|170709114|ref|ZP_02899541.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str. A0389]
 gi|177653980|ref|ZP_02936021.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str. A0174]
 gi|190566862|ref|ZP_03019778.1| Holliday junction DNA helicase RuvB [Bacillus anthracis
           Tsiankovskii-I]
 gi|227817198|ref|YP_002817207.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str. CDC
           684]
 gi|229602286|ref|YP_002868706.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str. A0248]
 gi|254684175|ref|ZP_05148035.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str.
           CNEVA-9066]
 gi|254724654|ref|ZP_05186437.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str. A1055]
 gi|254736522|ref|ZP_05194228.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str.
           Western North America USA6153]
 gi|254741560|ref|ZP_05199247.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str. Kruger
           B]
 gi|254751341|ref|ZP_05203378.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str.
           Vollum]
 gi|254757673|ref|ZP_05209700.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str.
           Australia 94]
 gi|33301602|sp|Q81LG9|RUVB_BACAN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|254767408|sp|C3P9A7|RUVB_BACAA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|254767409|sp|C3L6U9|RUVB_BACAC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|30259148|gb|AAP28353.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str. Ames]
 gi|47505096|gb|AAT33772.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|164712287|gb|EDR17823.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str. A0488]
 gi|167511277|gb|EDR86663.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str. A0193]
 gi|167528423|gb|EDR91191.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str. A0442]
 gi|170125966|gb|EDS94866.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str. A0389]
 gi|170667397|gb|EDT18155.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str. A0465]
 gi|172081035|gb|EDT66113.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str. A0174]
 gi|190561853|gb|EDV15822.1| Holliday junction DNA helicase RuvB [Bacillus anthracis
           Tsiankovskii-I]
 gi|227005878|gb|ACP15621.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str. CDC
           684]
 gi|229266694|gb|ACQ48331.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str. A0248]
          Length = 333

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 187/329 (56%), Positives = 245/329 (74%), Gaps = 1/329 (0%)

Query: 5   EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E LLS   + EDAD+   LRP+TL ++ GQ +A  NL+VFIEAAK R E LDHVL  GPP
Sbjct: 3   ERLLSGESAYEDADLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLLYGPP 62

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT+L+  DVLFIDEIHRL   +EE
Sbjct: 63  GLGKTTLANIIANEMGVNVRTTSGPAIERPGDLAAVLTSLQPGDVLFIDEIHRLHRSIEE 122

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTR G L+ PL+DRFG+  RL +Y
Sbjct: 123 VLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSRLEYY 182

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            ++ L  IV+R A++  + +   AA EIA R+RGTPRIA RLLRRVRDFA+V    T+T 
Sbjct: 183 TVDQLSAIVERTAEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRGNGTVTM 242

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           EI   AL  L +DK+G D +D + L  I   F GGPVG+ET+SA + E    IED+ EPY
Sbjct: 243 EITQMALELLQVDKLGLDHIDHKLLLGIIEKFHGGPVGLETVSATIGEESHTIEDVYEPY 302

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++Q GF+QRTPRGR++ P+A++H G+++P
Sbjct: 303 LLQIGFLQRTPRGRIVTPLAYEHFGMEMP 331


>gi|145632563|ref|ZP_01788297.1| Holliday junction DNA helicase B [Haemophilus influenzae 3655]
 gi|229845013|ref|ZP_04465150.1| Holliday junction DNA helicase B [Haemophilus influenzae 6P18H1]
 gi|144986758|gb|EDJ93310.1| Holliday junction DNA helicase B [Haemophilus influenzae 3655]
 gi|229812147|gb|EEP47839.1| Holliday junction DNA helicase B [Haemophilus influenzae 6P18H1]
          Length = 335

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 179/308 (58%), Positives = 234/308 (75%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L ++ GQ +    + +FI+AAK R +ALDH+L  GPPGLGKTTLA +VA E+GVN
Sbjct: 23  IRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIVANEMGVN 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS  +EE+LYPAMED+QLD+M+GEG
Sbjct: 83  IRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEG 142

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+K++L  FTL+ ATTR G LT+PL+DRFGI  RL FY +EDL +IV R A    L
Sbjct: 143 PAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVARSAGCLNL 202

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  +AA E+A RSRGTPRIA RLLRRVRD+A+V +   I+ ++A  AL  L +D  GFD
Sbjct: 203 ELEQQAAFEVARRSRGTPRIANRLLRRVRDYADVRNGGVISVDVAKQALSMLDVDDAGFD 262

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            LD + L+ +   F GGPVG++ ++A + E RD IED++EPY+IQQGF+QRTPRGR+   
Sbjct: 263 YLDRKLLSAVIERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTPRGRIATS 322

Query: 322 IAWQHLGI 329
             ++H G+
Sbjct: 323 KTYRHFGL 330


>gi|295695627|ref|YP_003588865.1| Holliday junction DNA helicase RuvB [Bacillus tusciae DSM 2912]
 gi|295411229|gb|ADG05721.1| Holliday junction DNA helicase RuvB [Bacillus tusciae DSM 2912]
          Length = 340

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 191/325 (58%), Positives = 240/325 (73%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           +E ++S + + ED  +  LRPR L E+ GQ +   NL+VFI AAK R EALDHVL  GPP
Sbjct: 2   QERMVSAHYTGEDGQLESLRPRNLNEYIGQDQVKENLRVFITAAKMRREALDHVLLYGPP 61

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++A ELGV   +TSGP I + GDLAA+LTNL + DVLFIDEIHRLS +VEE
Sbjct: 62  GLGKTTLAGIIAHELGVQMHTTSGPAIERPGDLAAILTNLSEGDVLFIDEIHRLSRVVEE 121

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILYPAMED+ LD ++G+GPSARS++++L  FTLI ATTR GLL++PL+DRFG+   L +Y
Sbjct: 122 ILYPAMEDYALDFIIGKGPSARSIRLDLPPFTLIGATTRAGLLSSPLRDRFGVVGHLEYY 181

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
             EDL  IV+R A++  + +  E A EIA RSRGTPR+AGRLL+RVRDFA+V     I R
Sbjct: 182 SQEDLCRIVRRAAQILQVPLEPEGAEEIARRSRGTPRVAGRLLKRVRDFAQVDGHGKIDR 241

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           E+A AAL R+ +D  G D LD R L  +  +FGGGPVG+ET+SA L E  D IED+ EPY
Sbjct: 242 EVAAAALERIQVDSAGLDALDHRLLLTMIDHFGGGPVGLETLSATLGEEPDTIEDVYEPY 301

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLG 328
           ++Q GFIQRTPRGR++   A  HLG
Sbjct: 302 LLQIGFIQRTPRGRVVTERACAHLG 326


>gi|114321924|ref|YP_743607.1| Holliday junction DNA helicase RuvB [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|122310676|sp|Q0A4X0|RUVB_ALHEH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|114228318|gb|ABI58117.1| Holliday junction DNA helicase subunit RuvB [Alkalilimnicola
           ehrlichii MLHE-1]
          Length = 351

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 190/334 (56%), Positives = 245/334 (73%), Gaps = 5/334 (1%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M DR  L++ + S ED  I   +RPR L ++ GQ      +++F+ AA+ R EALDH L 
Sbjct: 1   MNDR--LITPDASGEDEAIDRAIRPRRLTDYIGQPVVREQMEIFVHAARGRGEALDHTLI 58

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A E+GV+ R TSGPV+ K GDLAALLTNLE  DVLF+DEIHRLS 
Sbjct: 59  FGPPGLGKTTLAHIIANEMGVSMRQTSGPVLDKPGDLAALLTNLEPHDVLFVDEIHRLSA 118

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMEDFQ+D+M+GEGP+ARS+K++L  FTL+ ATTR GLLT+PL+DRFGI  R
Sbjct: 119 VVEEVLYPAMEDFQIDIMIGEGPAARSIKLDLPPFTLVGATTRAGLLTSPLRDRFGIVQR 178

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAAC-EIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           L +Y + DL  IV+R A L  L++ DE  C EIA R+RGTPRIA RLLRRVRD+AEV   
Sbjct: 179 LEYYNVADLSGIVKRSAHLLNLSI-DETGCQEIAGRARGTPRIANRLLRRVRDYAEVRAD 237

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             I+ E+A AA+  L +D+ GFD+ D R L  I   F GGPVG+++I+A + E R  IED
Sbjct: 238 GHISGEVAHAAMELLNVDRNGFDEQDRRLLLAIMEKFDGGPVGLDSIAAAIGEERGTIED 297

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++EPY+IQQG++ RTPRGR+    AW H G++ P
Sbjct: 298 VVEPYLIQQGYLMRTPRGRMATRNAWLHFGLNPP 331


>gi|119477230|ref|ZP_01617466.1| Holliday junction DNA helicase RuvB [marine gamma proteobacterium
           HTCC2143]
 gi|119449593|gb|EAW30831.1| Holliday junction DNA helicase RuvB [marine gamma proteobacterium
           HTCC2143]
          Length = 354

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 184/309 (59%), Positives = 234/309 (75%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+TL ++ GQ      + +FI AA+ R E LDH L  GPPGLGKTTLA ++A E+GV+
Sbjct: 23  IRPKTLVDYVGQPVVREQMDIFISAARLRDEPLDHTLIFGPPGLGKTTLANILATEMGVS 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            ++TSGPV+ KAGDLAAL+TNLE  DVLFIDEIHRLS  +EEILYPAMED+QLD+M+GEG
Sbjct: 83  LKTTSGPVLEKAGDLAALMTNLEPGDVLFIDEIHRLSPQIEEILYPAMEDYQLDIMIGEG 142

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+K++L  FTL+ ATTR GLLT+PL+DRFGI  RL FY  EDL  IV R A +  +
Sbjct: 143 PAARSIKLDLPPFTLVGATTRAGLLTSPLRDRFGIVQRLEFYNTEDLTHIVSRSAAILDV 202

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + +E ACEIA RSRGTPRIA RLLRRVRD+A+V    +IT+ IAD AL  L ID+ GFD
Sbjct: 203 LMDEEGACEIARRSRGTPRIANRLLRRVRDYADVKGDGSITKSIADKALDMLNIDQHGFD 262

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            LD R L  +   F GGPVG+++++A +SE R  IED++EPY+IQQG+I R+PRGR+   
Sbjct: 263 HLDRRLLLALIEKFDGGPVGVDSLAAAISEERGTIEDVLEPYLIQQGYILRSPRGRMATR 322

Query: 322 IAWQHLGID 330
            A+ H G+D
Sbjct: 323 NAYLHFGLD 331


>gi|229129700|ref|ZP_04258668.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           BDRD-Cer4]
 gi|228653817|gb|EEL09687.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           BDRD-Cer4]
          Length = 333

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 188/329 (57%), Positives = 244/329 (74%), Gaps = 1/329 (0%)

Query: 5   EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E LLS   + EDAD+   LRP+TL ++ GQ +A  NL+VFIEAAK R E LDHVL  GPP
Sbjct: 3   ERLLSGESAYEDADLEYSLRPQTLRQYIGQNKAKHNLEVFIEAAKMREETLDHVLLYGPP 62

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT L+  DVLFIDEIHRL   +EE
Sbjct: 63  GLGKTTLANIIANEMGVNVRTTSGPAIERPGDLAAVLTALQPGDVLFIDEIHRLHRSIEE 122

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTR G L+ PL+DRFG+  RL +Y
Sbjct: 123 VLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSRLEYY 182

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            ++ L  IV+R A++  + +   AA EIA R+RGTPRIA RLLRRVRDFA+V    T+T 
Sbjct: 183 TVDQLSAIVERTAEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRGNGTVTM 242

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           EI   AL  L +DK+G D +D + L  I   F GGPVG+ET+SA + E    IED+ EPY
Sbjct: 243 EITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSATIGEESHTIEDVYEPY 302

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++Q GF+QRTPRGR++ P+A++H G++IP
Sbjct: 303 LLQIGFLQRTPRGRIVTPLAYEHFGMEIP 331


>gi|49481506|ref|YP_038470.1| Holliday junction DNA helicase RuvB [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|52141086|ref|YP_085743.1| Holliday junction DNA helicase B [Bacillus cereus E33L]
 gi|68715378|sp|Q634C4|RUVB_BACCZ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|68715488|sp|Q6HDA6|RUVB_BACHK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|49333062|gb|AAT63708.1| holliday junction DNA helicase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|51974555|gb|AAU16105.1| Holliday junction DNA helicase, subunit B [Bacillus cereus E33L]
          Length = 336

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 189/333 (56%), Positives = 248/333 (74%), Gaps = 2/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           +MD E LLS   + EDAD+   LRP+TL ++ GQ +A  NL+VFIEAAK R E LDHVL 
Sbjct: 3   IMD-ERLLSGESAYEDADLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLL 61

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT+L+  DVLFIDEIHRL  
Sbjct: 62  YGPPGLGKTTLANIIANEMGVNVRTTSGPAIERPGDLAAVLTSLQPGDVLFIDEIHRLHR 121

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            +EE+LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTR G L+ PL+DRFG+  R
Sbjct: 122 SIEEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSR 181

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y ++ L  IV+R A++  + +   AA EIA R+RGTPRIA RLLRRVRDFA+V    
Sbjct: 182 LEYYTVDQLSAIVERTAEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRGNG 241

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           T+T EI   AL  L +DK+G D +D + L  I   F GGPVG+ET+SA + E    IED+
Sbjct: 242 TVTMEITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSATIGEESHTIEDV 301

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
            EPY++Q GF+QRTPRGR++ P+A++H G+++P
Sbjct: 302 YEPYLLQIGFLQRTPRGRIVTPLAYEHFGMEMP 334


>gi|330502220|ref|YP_004379089.1| Holliday junction DNA helicase RuvB [Pseudomonas mendocina NK-01]
 gi|328916506|gb|AEB57337.1| Holliday junction DNA helicase RuvB [Pseudomonas mendocina NK-01]
          Length = 350

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 185/313 (59%), Positives = 236/313 (75%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  L ++ GQ      + +FI+AA+ RAEALDH L  GPPGLGKTTLA ++A E+G +
Sbjct: 23  IRPLRLADYIGQPVVREQMALFIQAARGRAEALDHTLIFGPPGLGKTTLANIIAEEMGSS 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            +STSGPV+ + GDLAALLTNLE  DVLFIDEIHRLS +VEE+LYPAMEDFQLD+M+GEG
Sbjct: 83  IKSTSGPVLERPGDLAALLTNLESGDVLFIDEIHRLSPVVEEVLYPAMEDFQLDIMIGEG 142

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY I+DL TIV R A + GL
Sbjct: 143 PAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQRLEFYGIDDLATIVSRSAGILGL 202

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  + A EIA R+RGTPRIA RLLRRVRDFAEV     I++ IAD AL  L +D+ GFD
Sbjct: 203 PIEAKGAFEIARRARGTPRIANRLLRRVRDFAEVRGTGHISQSIADQALNLLDVDERGFD 262

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             D R L  +   F GGPVG+++++A + E R  IED++EPY+IQQG++ RTPRGR++  
Sbjct: 263 HSDRRLLLAMIEKFDGGPVGLDSLAAAIGEERHTIEDVLEPYLIQQGYMMRTPRGRVVTR 322

Query: 322 IAWQHLGIDIPHR 334
            A+ H G++IP R
Sbjct: 323 HAYLHFGLNIPKR 335


>gi|262375569|ref|ZP_06068802.1| Holliday junction DNA helicase RuvB [Acinetobacter lwoffii SH145]
 gi|262309823|gb|EEY90953.1| Holliday junction DNA helicase RuvB [Acinetobacter lwoffii SH145]
          Length = 335

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 187/333 (56%), Positives = 245/333 (73%), Gaps = 2/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M DR  L+S +   ED     +RP +L+++ GQ      +++FI AA+ R EALDH L  
Sbjct: 1   MQDR--LISGSEKPEDHFDRAIRPTSLDDYIGQPVVREQMEIFIGAARGREEALDHTLIF 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++ARE+G N +STSGPV+ +AGDLAA+LTNLE+ DVLFIDEIHRLS +
Sbjct: 59  GPPGLGKTTLANIIAREMGGNLKSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPV 118

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EEILYPAMED+QLD+M+GEGP+ARS+K++L  FTL+AATTR GLLT+PL+DRFGI  RL
Sbjct: 119 IEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRL 178

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY +EDL  IV+R A L  + +T + A EIA RSRGTPRIA RLLRRVRD+A+V     
Sbjct: 179 EFYSVEDLTHIVKRSANLMDVPMTGDGAKEIARRSRGTPRIANRLLRRVRDYAQVKGTGE 238

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I +++A  AL  L +DK G D LD RYL+M+   F GGP G+E ++A ++E    +ED+I
Sbjct: 239 INQDMAQRALDMLKVDKDGLDTLDRRYLSMLLERFDGGPAGVEALAAAMAEDSGTLEDVI 298

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY+IQQG++ RT RGR+   +A+   G+  P 
Sbjct: 299 EPYLIQQGYVMRTARGRIATNMAYLQFGMTPPE 331


>gi|291530841|emb|CBK96426.1| Holliday junction DNA helicase, RuvB subunit [Eubacterium siraeum
           70/3]
          Length = 350

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 190/330 (57%), Positives = 241/330 (73%), Gaps = 3/330 (0%)

Query: 3   DREG--LLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           D EG  ++    S ED D+   LRPR L E+ GQ +   NL+V+I+AAK R E+LDHVL 
Sbjct: 12  DDEGARIVEPQFSAEDTDVEFSLRPRKLNEYIGQEKVKENLQVYIQAAKKRNESLDHVLL 71

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A E+GVNF+ TSGP I K G+LAALLT L+  DVLF+DEIHRLS 
Sbjct: 72  YGPPGLGKTTLAGIIANEMGVNFKVTSGPAIEKPGELAALLTGLQAGDVLFVDEIHRLSR 131

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEEILYPA+ED  LD+M+G+GPSA+S++++L+RFTLI ATTR G LT PL+DRFG+ +R
Sbjct: 132 QVEEILYPALEDCVLDIMIGKGPSAQSIRVDLNRFTLIGATTRAGQLTGPLRDRFGVIMR 191

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L  Y  E+L  IV R + +  +      A EIA RSRGTPRIA RLL+RVRDFAEV    
Sbjct: 192 LEMYTPEELCDIVMRSSVILSIPCDRSGAMEIAKRSRGTPRIANRLLKRVRDFAEVMGNG 251

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT+E+AD AL RL IDK+G D LD R+LTMI   + GGPVG+ET+++ L E    +ED+
Sbjct: 252 KITKEMADIALNRLEIDKLGLDSLDKRFLTMIINGYNGGPVGLETLASALGEESVTLEDV 311

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
            EPY++Q GFI RTPRGR    +A++HLG+
Sbjct: 312 CEPYLMQLGFISRTPRGRCATELAYKHLGL 341


>gi|301169021|emb|CBW28618.1| ATP-dependent DNA helicase, component of RuvABC resolvasome
           [Haemophilus influenzae 10810]
          Length = 335

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 181/315 (57%), Positives = 235/315 (74%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           ED     +RP+ L ++ GQ +    + +FI+AAK R +ALDH+L  GPPGLGKTTLA +V
Sbjct: 16  EDVIDRAIRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIV 75

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS  +EE+LYPAMED+QL
Sbjct: 76  ANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQL 135

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D+M+GEGP+ARS+K++L  FTL+ ATTR G LT+PL+DRFGI  RL FY +EDL +IV R
Sbjct: 136 DIMIGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVAR 195

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A    L +  +AA E+A RSRGTPRIA RLLRRVRD+A+V +   I+  +A  AL  L 
Sbjct: 196 SADCLNLELEQQAAFEVARRSRGTPRIANRLLRRVRDYADVRNGGIISINVAKQALSMLD 255

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D  GFD LD + L+ +   F GGPVG++ ++A + E RD IED++EPY+IQQGF+QRTP
Sbjct: 256 VDDAGFDYLDRKLLSAVIERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTP 315

Query: 315 RGRLLMPIAWQHLGI 329
           RGR+     ++H G+
Sbjct: 316 RGRIATSQTYRHFGL 330


>gi|194366896|ref|YP_002029506.1| Holliday junction DNA helicase RuvB [Stenotrophomonas maltophilia
           R551-3]
 gi|238693499|sp|B4ST32|RUVB_STRM5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|194349700|gb|ACF52823.1| Holliday junction DNA helicase RuvB [Stenotrophomonas maltophilia
           R551-3]
          Length = 346

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 186/316 (58%), Positives = 238/316 (75%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           ++DA  + +RP+ L ++ GQV     ++++I+AAK R +ALDHVL  GPPGLGKTTL+ V
Sbjct: 14  EDDAADASIRPKRLADYLGQVPVREQMEIYIQAAKGRGDALDHVLIFGPPGLGKTTLSHV 73

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +A ELGV  R TSGPVI KAGDLAALLTNL+  DVLFIDEIHRLS +VEE+LYPAMEDFQ
Sbjct: 74  IANELGVALRVTSGPVIEKAGDLAALLTNLQPHDVLFIDEIHRLSPVVEEVLYPAMEDFQ 133

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           +D+M+GEGP+ARS+KI+L  FTLI ATTR GLLT PL+DRFGI  RL FY +E+L  IV+
Sbjct: 134 IDIMIGEGPAARSIKIDLPPFTLIGATTRAGLLTAPLRDRFGIVQRLEFYSVEELTRIVR 193

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A +  +  T + A EIA R+RGTPRIA RLLRRVRD+A+V     I   +A AA+  L
Sbjct: 194 RSAAILAIDCTADGAGEIARRARGTPRIANRLLRRVRDYAQVKAGGHIDEAVAQAAMKML 253

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D  GFD+LD R L  +   F GGPVGIE+++A LSE R  +ED++EPY+IQQGF+ RT
Sbjct: 254 KVDPEGFDELDRRLLKTMVDYFDGGPVGIESLAAALSEERGTLEDVVEPYLIQQGFLVRT 313

Query: 314 PRGRLLMPIAWQHLGI 329
            RGR+    A++H+G+
Sbjct: 314 ARGRMATHKAYRHMGL 329


>gi|145636554|ref|ZP_01792222.1| Holliday junction DNA helicase RuvB [Haemophilus influenzae PittHH]
 gi|145270379|gb|EDK10314.1| Holliday junction DNA helicase RuvB [Haemophilus influenzae PittHH]
          Length = 335

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 179/308 (58%), Positives = 233/308 (75%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L ++ GQ +    + +FI+AAK R +ALDH+L  GPPGLGKTTLA +VA E+GVN
Sbjct: 23  IRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIVANEMGVN 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS  +EE+LYPAMED+QLD+M+GEG
Sbjct: 83  IRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEG 142

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+K++L  FTL+ ATTR G LT+PL+DRFGI  RL FY +EDL +IV R A    L
Sbjct: 143 PAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVARSAGCLNL 202

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  +AA E+A RSRGTPRIA RLLRRVRD+A+V +   I+  +A  AL  L +D  GFD
Sbjct: 203 ELEQQAAFEVARRSRGTPRIANRLLRRVRDYADVRNGGVISVNVAKQALSMLDVDDAGFD 262

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            LD + L+ +   F GGPVG++ ++A + E RD IED++EPY+IQQGF+QRTPRGR+   
Sbjct: 263 YLDRKLLSAVIERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTPRGRIATS 322

Query: 322 IAWQHLGI 329
             ++H G+
Sbjct: 323 KTYRHFGL 330


>gi|68248919|ref|YP_248031.1| Holliday junction DNA helicase RuvB [Haemophilus influenzae
           86-028NP]
 gi|145628661|ref|ZP_01784461.1| Holliday junction DNA helicase B [Haemophilus influenzae 22.1-21]
 gi|145631440|ref|ZP_01787210.1| Holliday junction DNA helicase RuvB [Haemophilus influenzae R3021]
 gi|145638775|ref|ZP_01794384.1| Holliday junction DNA helicase RuvB [Haemophilus influenzae PittII]
 gi|260582590|ref|ZP_05850380.1| Holliday junction DNA helicase RuvB [Haemophilus influenzae NT127]
 gi|81336670|sp|Q4QNM6|RUVB_HAEI8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|68057118|gb|AAX87371.1| holliday junction DNA helicase RuvB [Haemophilus influenzae
           86-028NP]
 gi|144979131|gb|EDJ88817.1| Holliday junction DNA helicase B [Haemophilus influenzae 22.1-21]
 gi|144982977|gb|EDJ90486.1| Holliday junction DNA helicase RuvB [Haemophilus influenzae R3021]
 gi|145272370|gb|EDK12278.1| Holliday junction DNA helicase RuvB [Haemophilus influenzae PittII]
 gi|260094401|gb|EEW78299.1| Holliday junction DNA helicase RuvB [Haemophilus influenzae NT127]
 gi|309750265|gb|ADO80249.1| Holliday junction resolvasome, ATPase subunit [Haemophilus
           influenzae R2866]
          Length = 335

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 181/315 (57%), Positives = 235/315 (74%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           ED     +RP+ L ++ GQ +    + +FI+AAK R +ALDH+L  GPPGLGKTTLA +V
Sbjct: 16  EDVIDRAIRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIV 75

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS  +EE+LYPAMED+QL
Sbjct: 76  ANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQL 135

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D+M+GEGP+ARS+K++L  FTL+ ATTR G LT+PL+DRFGI  RL FY +EDL +IV R
Sbjct: 136 DIMIGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVAR 195

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A    L +  +AA E+A RSRGTPRIA RLLRRVRD+A+V +   I+  +A  AL  L 
Sbjct: 196 SADCLNLELEQQAAFEVARRSRGTPRIANRLLRRVRDYADVRNGGIISINVAKQALSMLD 255

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D  GFD LD + L+ +   F GGPVG++ ++A + E RD IED++EPY+IQQGF+QRTP
Sbjct: 256 VDDAGFDYLDRKLLSAVIERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTP 315

Query: 315 RGRLLMPIAWQHLGI 329
           RGR+     ++H G+
Sbjct: 316 RGRIATSQTYRHFGL 330


>gi|206969947|ref|ZP_03230901.1| Holliday junction DNA helicase RuvB [Bacillus cereus AH1134]
 gi|218234560|ref|YP_002369229.1| Holliday junction DNA helicase RuvB [Bacillus cereus B4264]
 gi|228923172|ref|ZP_04086463.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228960693|ref|ZP_04122337.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|229071928|ref|ZP_04205139.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           F65185]
 gi|229081684|ref|ZP_04214179.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           Rock4-2]
 gi|229111892|ref|ZP_04241438.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           Rock1-15]
 gi|229146991|ref|ZP_04275353.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           BDRD-ST24]
 gi|229152623|ref|ZP_04280812.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           m1550]
 gi|229180696|ref|ZP_04308036.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           172560W]
 gi|229192631|ref|ZP_04319592.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           ATCC 10876]
 gi|296504910|ref|YP_003666610.1| Holliday junction DNA helicase B [Bacillus thuringiensis BMB171]
 gi|226725452|sp|B7HE54|RUVB_BACC4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|206735635|gb|EDZ52803.1| Holliday junction DNA helicase RuvB [Bacillus cereus AH1134]
 gi|218162517|gb|ACK62509.1| Holliday junction DNA helicase RuvB [Bacillus cereus B4264]
 gi|228590938|gb|EEK48796.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           ATCC 10876]
 gi|228602841|gb|EEK60322.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           172560W]
 gi|228630884|gb|EEK87524.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           m1550]
 gi|228636488|gb|EEK92956.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           BDRD-ST24]
 gi|228671648|gb|EEL26946.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           Rock1-15]
 gi|228701688|gb|EEL54179.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           Rock4-2]
 gi|228711224|gb|EEL63188.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           F65185]
 gi|228798999|gb|EEM45972.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228836551|gb|EEM81901.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|296325962|gb|ADH08890.1| Holliday junction DNA helicase B [Bacillus thuringiensis BMB171]
          Length = 333

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 188/329 (57%), Positives = 244/329 (74%), Gaps = 1/329 (0%)

Query: 5   EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E LLS   + EDAD+   LRP+TL ++ GQ +A  NL+VFIEAAK R E LDHVL  GPP
Sbjct: 3   ERLLSGESAYEDADLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLLYGPP 62

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT L+  DVLFIDEIHRL   +EE
Sbjct: 63  GLGKTTLANIIANEMGVNVRTTSGPAIERPGDLAAVLTALQPGDVLFIDEIHRLHRSIEE 122

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTR G L+ PL+DRFG+  RL +Y
Sbjct: 123 VLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSRLEYY 182

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            ++ L  IV+R A++  + +   AA EIA R+RGTPRIA RLLRRVRDFA+V    T+T 
Sbjct: 183 TVDQLSAIVERTAEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRGNGTVTM 242

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           EI   AL  L +DK+G D +D + L  I   F GGPVG+ET+SA + E    IED+ EPY
Sbjct: 243 EITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSATIGEESHTIEDVYEPY 302

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++Q GF+QRTPRGR++ P+A++H G++IP
Sbjct: 303 LLQIGFLQRTPRGRIVTPLAYEHFGMEIP 331


>gi|196034306|ref|ZP_03101715.1| Holliday junction DNA helicase RuvB [Bacillus cereus W]
 gi|222097865|ref|YP_002531922.1| holliday junction DNA helicase ruvb [Bacillus cereus Q1]
 gi|228929465|ref|ZP_04092486.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228935740|ref|ZP_04098553.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|229093492|ref|ZP_04224595.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           Rock3-42]
 gi|229123961|ref|ZP_04253153.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           95/8201]
 gi|254767411|sp|B9IYZ4|RUVB_BACCQ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|195992848|gb|EDX56807.1| Holliday junction DNA helicase RuvB [Bacillus cereus W]
 gi|221241923|gb|ACM14633.1| holliday junction DNA helicase [Bacillus cereus Q1]
 gi|228659263|gb|EEL14911.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           95/8201]
 gi|228689963|gb|EEL43767.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           Rock3-42]
 gi|228823978|gb|EEM69797.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228830253|gb|EEM75869.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
          Length = 333

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 187/329 (56%), Positives = 245/329 (74%), Gaps = 1/329 (0%)

Query: 5   EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E LLS   + EDAD+   LRP+TL ++ GQ +A  NL+VFIEAAK R E LDHVL  GPP
Sbjct: 3   ERLLSGESAYEDADLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLLYGPP 62

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT+L+  DVLFIDEIHRL   +EE
Sbjct: 63  GLGKTTLANIIANEMGVNVRTTSGPAIERPGDLAAVLTSLQPGDVLFIDEIHRLHRSIEE 122

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTR G L+ PL+DRFG+  RL +Y
Sbjct: 123 VLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSRLEYY 182

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            ++ L  IV+R A++  + +   AA EIA R+RGTPRIA RLLRRVRDFA+V    T+T 
Sbjct: 183 TVDQLSAIVERTAEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRGNGTVTM 242

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           EI   AL  L +DK+G D +D + L  I   F GGPVG+ET+SA + E    IED+ EPY
Sbjct: 243 EITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSATIGEESHTIEDVYEPY 302

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++Q GF+QRTPRGR++ P+A++H G+++P
Sbjct: 303 LLQIGFLQRTPRGRIVTPLAYEHFGMEMP 331


>gi|296117350|ref|ZP_06835940.1| Holliday junction DNA helicase RuvB [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295976116|gb|EFG82904.1| Holliday junction DNA helicase RuvB [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 352

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 205/324 (63%), Positives = 253/324 (78%), Gaps = 2/324 (0%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
            ++D   + LRP+TL++FTGQ  +  NL +FI AA+ R EA+DHVL  GPPGLGKTTLAQ
Sbjct: 14  GEDDIAEASLRPQTLDDFTGQKASRENLAIFIAAARQRGEAMDHVLLHGPPGLGKTTLAQ 73

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           +VARELGV FR+TSGPVI +AGDLAA+LTNL+ RDVLFIDEIHRL   +EE+LYPAMEDF
Sbjct: 74  IVARELGVGFRATSGPVIQRAGDLAAILTNLQPRDVLFIDEIHRLQPSIEEVLYPAMEDF 133

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           QLDL++GEGP+ARSV+I+L+ FTL+AATTR GLL  PL+DRFGIP+RL FY  E+L+ IV
Sbjct: 134 QLDLIIGEGPAARSVRIDLAPFTLVAATTRAGLLATPLRDRFGIPLRLVFYTPEELRQIV 193

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA--KTITREIADAAL 250
            RGA+     +T + A EIA RSRGTPRIAGRLLRRVRDFA VA +    + R +ADAAL
Sbjct: 194 SRGAQKLNFELTHDGAEEIARRSRGTPRIAGRLLRRVRDFAAVARSGHGPVDRALADAAL 253

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
            RL +D MG D +D RYL  IA+   GGPVG+ET++A L+E RD IED+IEPY+IQ+G +
Sbjct: 254 ARLEVDSMGLDGMDRRYLRRIAQYHHGGPVGVETLAAALAEARDTIEDVIEPYLIQEGLV 313

Query: 311 QRTPRGRLLMPIAWQHLGIDIPHR 334
            RT RGR+L    W+HLG+  P R
Sbjct: 314 LRTSRGRMLGERGWRHLGLVPPAR 337


>gi|228948134|ref|ZP_04110418.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228811492|gb|EEM57829.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
          Length = 333

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 187/329 (56%), Positives = 245/329 (74%), Gaps = 1/329 (0%)

Query: 5   EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E LLS   + EDAD+   LRP+TL ++ GQ +A  NL+VFIEAAK R E LDHVL  GPP
Sbjct: 3   ERLLSGEFAYEDADLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLLYGPP 62

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT+L+  DVLFIDEIHRL   +EE
Sbjct: 63  GLGKTTLANIIANEMGVNVRTTSGPAIERPGDLAAVLTSLQPGDVLFIDEIHRLHRSIEE 122

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTR G L+ PL+DRFG+  RL +Y
Sbjct: 123 VLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSRLEYY 182

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            ++ L  IV+R A++  + +   AA EIA R+RGTPRIA RLLRRVRDFA+V    T+T 
Sbjct: 183 TVDQLSAIVERTAEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRGNGTVTM 242

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           EI   AL  L +DK+G D +D + L  I   F GGPVG+ET+SA + E    IED+ EPY
Sbjct: 243 EITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSATIGEESHTIEDVYEPY 302

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++Q GF+QRTPRGR++ P+A++H G+++P
Sbjct: 303 LLQIGFLQRTPRGRIVTPLAYEHFGMEMP 331


>gi|171060624|ref|YP_001792973.1| Holliday junction DNA helicase RuvB [Leptothrix cholodnii SP-6]
 gi|238689127|sp|B1Y8E2|RUVB_LEPCP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|170778069|gb|ACB36208.1| Holliday junction DNA helicase RuvB [Leptothrix cholodnii SP-6]
          Length = 363

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 186/319 (58%), Positives = 236/319 (73%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
            E+A    LRP+ L+E+ GQ +A   L++FI AA+ R+EALDHVL  GPPGLGKTTL+ +
Sbjct: 31  NEEAMERALRPKLLQEYVGQAKAREQLEIFIGAARKRSEALDHVLLFGPPGLGKTTLSHI 90

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +A ELGVN R TSGPV+ K  DLAA+LTNLE  DVLFIDEIHRLS +VEEILYPA+ED+Q
Sbjct: 91  IAAELGVNLRQTSGPVLEKPKDLAAILTNLEANDVLFIDEIHRLSPVVEEILYPALEDYQ 150

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           +D+M+GEGP+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  E+L  IV 
Sbjct: 151 IDIMIGEGPAARSIKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTPEELVRIVT 210

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A L  + +  E A E+A RSRGTPRIA RLLRRVRD+AEV     I + IA+ AL  L
Sbjct: 211 RSAGLLNVPIDAEGALELACRSRGTPRIANRLLRRVRDYAEVKSDGRIVKRIAELALTML 270

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D  GFD +D + L  +   F GGPVG++ ++A + E    IED+IEPY+IQQGF+QRT
Sbjct: 271 DVDPRGFDVMDRKLLEAVIHRFDGGPVGLDNVAAAIGEDAGTIEDVIEPYLIQQGFLQRT 330

Query: 314 PRGRLLMPIAWQHLGIDIP 332
           PRGR+    A++HLG+  P
Sbjct: 331 PRGRIATLAAYRHLGVTPP 349


>gi|42783551|ref|NP_980798.1| Holliday junction DNA helicase RuvB [Bacillus cereus ATCC 10987]
 gi|206976061|ref|ZP_03236971.1| Holliday junction DNA helicase RuvB [Bacillus cereus H3081.97]
 gi|217961911|ref|YP_002340481.1| Holliday junction DNA helicase RuvB [Bacillus cereus AH187]
 gi|229141159|ref|ZP_04269700.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           BDRD-ST26]
 gi|47606081|sp|P61528|RUVB_BACC1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|226725453|sp|B7HQH9|RUVB_BACC7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|42739480|gb|AAS43406.1| Holliday junction DNA helicase RuvB [Bacillus cereus ATCC 10987]
 gi|206745813|gb|EDZ57210.1| Holliday junction DNA helicase RuvB [Bacillus cereus H3081.97]
 gi|217063448|gb|ACJ77698.1| Holliday junction DNA helicase RuvB [Bacillus cereus AH187]
 gi|228642322|gb|EEK98612.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           BDRD-ST26]
          Length = 333

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 187/329 (56%), Positives = 245/329 (74%), Gaps = 1/329 (0%)

Query: 5   EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E LLS   + EDAD+   LRP+TL ++ GQ +A  NL+VFIEAAK R E LDHVL  GPP
Sbjct: 3   ERLLSGESAYEDADLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLLYGPP 62

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT+L+  DVLFIDEIHRL   +EE
Sbjct: 63  GLGKTTLANIIANEMGVNVRTTSGPAIERPGDLAAVLTSLQPGDVLFIDEIHRLHRSIEE 122

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTR G L+ PL+DRFG+  RL +Y
Sbjct: 123 VLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSRLEYY 182

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            ++ L  IV+R A++  + +   AA EIA R+RGTPRIA RLLRRVRDFA+V    T+T 
Sbjct: 183 TVDQLSEIVERTAEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRGNGTVTM 242

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           EI   AL  L +DK+G D +D + L  I   F GGPVG+ET+SA + E    IED+ EPY
Sbjct: 243 EITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSATIGEESHTIEDVYEPY 302

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++Q GF+QRTPRGR++ P+A++H G+++P
Sbjct: 303 LLQIGFLQRTPRGRIVTPLAYEHFGMEMP 331


>gi|301055928|ref|YP_003794139.1| holliday junction DNA helicase RuvB [Bacillus anthracis CI]
 gi|300378097|gb|ADK07001.1| holliday junction DNA helicase RuvB [Bacillus cereus biovar
           anthracis str. CI]
          Length = 333

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 187/329 (56%), Positives = 244/329 (74%), Gaps = 1/329 (0%)

Query: 5   EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E LLS   + EDAD+   LRP+TL ++ GQ +A  NL+VFIEAAK R E LDHVL  GPP
Sbjct: 3   ERLLSGESAYEDADLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLLYGPP 62

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT+L+  DVLFIDEIHRL   +EE
Sbjct: 63  GLGKTTLANIIANEMGVNVRTTSGPAIERPGDLAAVLTSLQPGDVLFIDEIHRLHRSIEE 122

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTR G L+ PL+DRFG+  RL +Y
Sbjct: 123 VLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSRLEYY 182

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            ++ L  IV+R  ++  + +   AA EIA R+RGTPRIA RLLRRVRDFA+V    T+T 
Sbjct: 183 TVDQLSAIVERTGEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRGNGTVTM 242

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           EI   AL  L +DK+G D +D + L  I   F GGPVG+ET+SA + E    IED+ EPY
Sbjct: 243 EITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSATIGEESHTIEDVYEPY 302

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++Q GF+QRTPRGR++ P+A++H G++IP
Sbjct: 303 LLQIGFLQRTPRGRIVTPLAYEHFGMEIP 331


>gi|229048129|ref|ZP_04193700.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           AH676]
 gi|228723232|gb|EEL74606.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           AH676]
          Length = 333

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 188/329 (57%), Positives = 244/329 (74%), Gaps = 1/329 (0%)

Query: 5   EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E LLS   + EDAD+   LRP+TL ++ GQ +A  NL+VFIEAAK R E LDHVL  GPP
Sbjct: 3   ERLLSGEPAYEDADLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLLYGPP 62

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT L+  DVLFIDEIHRL   +EE
Sbjct: 63  GLGKTTLANIIANEMGVNVRTTSGPAIERPGDLAAVLTALQPGDVLFIDEIHRLHRSIEE 122

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTR G L+ PL+DRFG+  RL +Y
Sbjct: 123 VLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSRLEYY 182

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            ++ L  IV+R A++  + +   AA EIA R+RGTPRIA RLLRRVRDFA+V    T+T 
Sbjct: 183 TVDQLSAIVERTAEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRGNGTVTM 242

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           EI   AL  L +DK+G D +D + L  I   F GGPVG+ET+SA + E    IED+ EPY
Sbjct: 243 EITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSATIGEESHTIEDVYEPY 302

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++Q GF+QRTPRGR++ P+A++H G++IP
Sbjct: 303 LLQIGFLQRTPRGRIVTPLAYEHFGMEIP 331


>gi|258621409|ref|ZP_05716443.1| Holliday junction DNA helicase RuvB [Vibrio mimicus VM573]
 gi|258586797|gb|EEW11512.1| Holliday junction DNA helicase RuvB [Vibrio mimicus VM573]
          Length = 314

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 180/307 (58%), Positives = 233/307 (75%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFR 83
           P+ L ++ GQ      +++FI+AA+ R EALDH+L  GPPGLGKTTLA +VA E+GVN R
Sbjct: 7   PKKLADYQGQDHVRDQMEIFIKAAQQRQEALDHLLIFGPPGLGKTTLANIVANEMGVNIR 66

Query: 84  STSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPS 143
           +TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS +VEE+LYPAMED+QLD+M+GEGP+
Sbjct: 67  TTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQLDIMIGEGPA 126

Query: 144 ARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAV 203
           ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  RL +Y + DL+ IVQR A   GL++
Sbjct: 127 ARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEYYNVADLQNIVQRSAHCLGLSM 186

Query: 204 TDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQL 263
             + A E+A R+RGTPRIA RLLRRVRD+AEV     I  + AD AL  L +D  GFD +
Sbjct: 187 DSDGALEVARRARGTPRIANRLLRRVRDYAEVKGDGHICAKTADKALDMLDVDHQGFDYM 246

Query: 264 DLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIA 323
           D + L  I   F GGPVG++ ++A + E +D IED++EP++IQQG++QRTPRGR+    A
Sbjct: 247 DRKLLLAIMEKFSGGPVGLDNLAAAIGEEKDTIEDVLEPFLIQQGYLQRTPRGRIATDRA 306

Query: 324 WQHLGID 330
           + H G++
Sbjct: 307 YLHFGLE 313


>gi|228941588|ref|ZP_04104136.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228974517|ref|ZP_04135084.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228981111|ref|ZP_04141412.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus
           thuringiensis Bt407]
 gi|228778652|gb|EEM26918.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus
           thuringiensis Bt407]
 gi|228785234|gb|EEM33246.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228818095|gb|EEM64172.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|326942201|gb|AEA18097.1| Holliday junction DNA helicase B [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 333

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 187/329 (56%), Positives = 244/329 (74%), Gaps = 1/329 (0%)

Query: 5   EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E LLS   + EDAD+   LRP+TL ++ GQ +A  NL+VFIEAAK R E LDHVL  GPP
Sbjct: 3   ERLLSGESAYEDADLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLLYGPP 62

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT L+  DVLFIDEIHRL   +EE
Sbjct: 63  GLGKTTLANIIANEMGVNVRTTSGPAIERPGDLAAVLTALQPGDVLFIDEIHRLHRSIEE 122

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTR G L+ PL+DRFG+  RL +Y
Sbjct: 123 VLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSRLEYY 182

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            ++ L  IV+R A++  + +   AA EIA R+RGTPRIA RLLRRVRDFA+V    T+T 
Sbjct: 183 TVDQLSAIVERTAEVFEVEINSLAALEIARRARGTPRIANRLLRRVRDFAQVRGNGTVTM 242

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           EI   AL  L +DK+G D +D + L  I   F GGPVG+ET+SA + E    IED+ EPY
Sbjct: 243 EITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSATIGEESHTIEDVYEPY 302

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++Q GF+QRTPRGR++ P+A++H G+++P
Sbjct: 303 LLQIGFLQRTPRGRIVTPLAYEHFGMEMP 331


>gi|118479575|ref|YP_896726.1| Holliday junction DNA helicase RuvB [Bacillus thuringiensis str. Al
           Hakam]
 gi|166231463|sp|A0RJ26|RUVB_BACAH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|118418800|gb|ABK87219.1| Holliday junction DNA helicase subunit RuvB [Bacillus thuringiensis
           str. Al Hakam]
          Length = 336

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 188/333 (56%), Positives = 247/333 (74%), Gaps = 2/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           +MD E LLS   + EDAD+   LRP+TL ++ GQ +A  NL+VFIEAAK R E LDHVL 
Sbjct: 3   IMD-ERLLSGESAYEDADLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLL 61

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT+L+  DVLFIDEIHRL  
Sbjct: 62  YGPPGLGKTTLANIIANEMGVNVRTTSGPAIERPGDLAAVLTSLQPGDVLFIDEIHRLHR 121

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            +EE+LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTR G L+ PL+DRFG+  R
Sbjct: 122 SIEEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSR 181

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y ++ L  IV+R  ++  + +   AA EIA R+RGTPRIA RLLRRVRDFA+V    
Sbjct: 182 LEYYTVDQLSAIVERTGEVFEVEINSLAALEIARRARGTPRIANRLLRRVRDFAQVRGNG 241

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           T+T EI   AL  L +DK+G D +D + L  I   F GGPVG+ET+SA + E    IED+
Sbjct: 242 TVTMEITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSATIGEESHTIEDV 301

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
            EPY++Q GF+QRTPRGR++ P+A++H G+++P
Sbjct: 302 YEPYLLQIGFLQRTPRGRIVTPLAYEHFGMEMP 334


>gi|289674672|ref|ZP_06495562.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv.
           syringae FF5]
          Length = 315

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 183/296 (61%), Positives = 231/296 (78%)

Query: 39  NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAA 98
            +++FI+AA+ R+EALDH L  GPPGLGKTTLA ++A+E+GV+ +STSGPV+ + GDLAA
Sbjct: 3   QMELFIQAARGRSEALDHTLIFGPPGLGKTTLANIIAQEMGVSIKSTSGPVLERPGDLAA 62

Query: 99  LLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIA 158
           +LTNLE  DVLFIDEIHRLS IVEE+LYPAMEDFQLD+M+GEGP+ARS+K++L  FTL+ 
Sbjct: 63  ILTNLEPNDVLFIDEIHRLSPIVEEVLYPAMEDFQLDIMIGEGPAARSIKLDLPPFTLVG 122

Query: 159 ATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGT 218
           ATTR G+LTNPL+DRFGI  RL FY I DL TIV R A + GL +  + A EIA R+RGT
Sbjct: 123 ATTRAGMLTNPLRDRFGIVQRLEFYNIADLSTIVSRSAGILGLVIEPQGAFEIARRARGT 182

Query: 219 PRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
           PRIA RLLRRVRDFAEV     ITR+ AD AL  L +D+ GFD  D R L  +   F GG
Sbjct: 183 PRIANRLLRRVRDFAEVRGNGQITRQTADKALNLLDVDEHGFDHQDRRLLLTMIEKFDGG 242

Query: 279 PVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           PVG+++++A +SE R  IED++EPY+IQQG+I RTPRGR++   A+ H G++IP R
Sbjct: 243 PVGVDSLAAAISEERHTIEDVLEPYLIQQGYIMRTPRGRVVTRHAYLHFGLNIPSR 298


>gi|260551461|ref|ZP_05825645.1| Holliday junction resolvasome [Acinetobacter sp. RUH2624]
 gi|293609858|ref|ZP_06692160.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|260405455|gb|EEW98948.1| Holliday junction resolvasome [Acinetobacter sp. RUH2624]
 gi|292828310|gb|EFF86673.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|325123085|gb|ADY82608.1| Holliday junction DNA helicase B [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 334

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 187/333 (56%), Positives = 241/333 (72%), Gaps = 2/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M DR  L+S     ED     +RP +L ++ GQ      +++FI AA+ R EALDH L  
Sbjct: 1   MQDR--LISGTEKPEDHFDRAIRPTSLADYIGQPVVREQMEIFIGAARGRGEALDHTLIF 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++ARE+G N +STSGPV+ +AGDLAA+LTNLE+ DVLFIDEIHRLS +
Sbjct: 59  GPPGLGKTTLANIIAREMGGNLKSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPV 118

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EEILYPAMED+QLD+M+GEGP+ARS+K++L  FTL+AATTR GLLT+PL+DRFGI  RL
Sbjct: 119 IEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRL 178

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY +EDL  IV R A L  + +T E A E+A RSRGTPRIA RLLRRVRD+A+V     
Sbjct: 179 EFYSVEDLTHIVSRSANLMDVPITVEGAEEVARRSRGTPRIANRLLRRVRDYAQVKGTGE 238

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +T E+A  AL  L +DK G D LD RYL+M+   F GGP G+E ++A ++E    +ED+I
Sbjct: 239 VTHEMAQRALDMLNVDKAGLDTLDRRYLSMLLERFDGGPAGVEALAAAMAEDSGTLEDVI 298

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY+IQQG++ RT RGR+    ++   G+  P 
Sbjct: 299 EPYLIQQGYVMRTARGRIATNQSYLQFGMTPPE 331


>gi|317121687|ref|YP_004101690.1| Holliday junction DNA helicase subunit RuvB [Thermaerobacter
           marianensis DSM 12885]
 gi|315591667|gb|ADU50963.1| Holliday junction DNA helicase subunit RuvB [Thermaerobacter
           marianensis DSM 12885]
          Length = 372

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 185/333 (55%), Positives = 250/333 (75%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ E ++S  +   D  +   LRP++L++F GQ      L ++I+AA+ R +ALDHVL 
Sbjct: 1   MIEEERVVSSRLQPGDVPLEQGLRPQSLDDFPGQEAVKERLSIYIQAARERGDALDHVLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKT+LAQV+ARELGV FR TSGP I +AGDLAALLTNL DRDVLFIDEIHRL  
Sbjct: 61  YGPPGLGKTSLAQVIARELGVGFRMTSGPAIERAGDLAALLTNLNDRDVLFIDEIHRLPR 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEE+LYPAMEDF LDL++G+GP+ARS++I+L RFTL+ ATTR G LT PL+DRFG+ +R
Sbjct: 121 PVEEVLYPAMEDFALDLIIGKGPAARSLRIDLPRFTLVGATTRAGRLTGPLRDRFGVLLR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y  E+L  IV R A++ G+ +  E A E+A R+RGTPR+A RLLRR+RD+A+V    
Sbjct: 181 LEYYRPEELARIVLRSARILGVPIDPEGAEEVARRARGTPRVANRLLRRLRDYAQVRADG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT E+A A L  + +D +G D+ D R L ++A ++GGGPVG+ET++A + E  + IED+
Sbjct: 241 VITAEVARAGLDLMEVDPLGLDRADRRLLRVMAEHYGGGPVGLETLAAAIGEEPETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
            EPY++Q GF+QRTPRGR+L   A++HLG+ +P
Sbjct: 301 YEPYLMQMGFLQRTPRGRVLARRAYEHLGLPVP 333


>gi|210622016|ref|ZP_03292959.1| hypothetical protein CLOHIR_00905 [Clostridium hiranonis DSM 13275]
 gi|210154461|gb|EEA85467.1| hypothetical protein CLOHIR_00905 [Clostridium hiranonis DSM 13275]
          Length = 351

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 182/331 (54%), Positives = 246/331 (74%), Gaps = 1/331 (0%)

Query: 2   MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
            D   +++  +  +D +I + LRP+TL+E+ GQ ++   L +FIEAA++R E LDHVL  
Sbjct: 18  FDENRIITSTMQMDDVEIENNLRPKTLDEYLGQEKSKEQLSIFIEAARSRNEQLDHVLLY 77

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A E+GVN R TSGP I KAGDLAA+LTNLE+ DVLFIDEIHR++  
Sbjct: 78  GPPGLGKTTLAGIIANEMGVNLRITSGPAIEKAGDLAAILTNLEENDVLFIDEIHRINRS 137

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDF LD+++G+GPSARS++++L +FTLI ATTR G+LTNPL+DRFG+  +L
Sbjct: 138 VEEVLYPAMEDFCLDIIIGKGPSARSIRLDLPKFTLIGATTRPGMLTNPLRDRFGVICKL 197

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           ++Y  ++L  IV+R + L G  + D++A EIA RSRGTPRIA RLL+RVRD+A+V     
Sbjct: 198 DYYTNDELAQIVKRSSGLLGAGIDDKSAAEIARRSRGTPRIANRLLKRVRDYAQVRANGD 257

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           IT ++A  AL  L +D +G D +D   L  I   FGGGPVG++T++A + E R+ IED+ 
Sbjct: 258 ITEDVAKDALELLGVDSLGLDYVDETLLKTIIEKFGGGPVGLDTLAASIGEDRNTIEDVY 317

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           EPY+IQ GFI R  RGR+ MP A++HL   I
Sbjct: 318 EPYLIQLGFINRGARGRMAMPKAYKHLNYPI 348


>gi|154498067|ref|ZP_02036445.1| hypothetical protein BACCAP_02048 [Bacteroides capillosus ATCC
           29799]
 gi|150273057|gb|EDN00214.1| hypothetical protein BACCAP_02048 [Bacteroides capillosus ATCC
           29799]
          Length = 351

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 182/328 (55%), Positives = 246/328 (75%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           E L++ +++++D +   LRP+TL E+ GQ +A  NL+VFI+AAK R E LDHVL  GPPG
Sbjct: 14  EPLVTTSLTRDDENEGSLRPKTLSEYIGQKKAKGNLEVFIQAAKMRGEPLDHVLLHGPPG 73

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTL+ ++A E+GVN R TSGP I K GDLAALLTNL++ D+LF+DEIHRL+  VEEI
Sbjct: 74  LGKTTLSGIIANEMGVNIRITSGPAIEKPGDLAALLTNLQENDILFVDEIHRLNRSVEEI 133

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPAMEDF +D+++G+GPSA S++++L RFTLI ATTR G L+ PL+DRFG+ +RL  Y 
Sbjct: 134 LYPAMEDFAIDIIIGKGPSANSIRLDLPRFTLIGATTRAGQLSAPLRDRFGVTLRLELYT 193

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            ++L  IV R A + G+ +  E A EIA RSRGTPRIA R+LRRVRDFA+V     ITR+
Sbjct: 194 PDELALIVSRSAGILGVPIEAEGAMEIARRSRGTPRIANRMLRRVRDFAQVRAGGVITRD 253

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +AD AL  L +D +G D +D R LT I  ++ GGPVG+ET++A ++E    +ED+ EPY+
Sbjct: 254 VADEALSALEVDYLGLDAVDRRMLTSIIEHYSGGPVGLETLAATINEEAVTLEDVYEPYL 313

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           +Q GF+ RTPRGR +   A++HLG+ +P
Sbjct: 314 MQMGFLTRTPRGRCVTRRAYEHLGLPVP 341


>gi|126668398|ref|ZP_01739355.1| Holliday junction DNA helicase RuvB [Marinobacter sp. ELB17]
 gi|126627107|gb|EAZ97747.1| Holliday junction DNA helicase RuvB [Marinobacter sp. ELB17]
          Length = 358

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 188/330 (56%), Positives = 240/330 (72%), Gaps = 1/330 (0%)

Query: 1   MMDREGLLS-RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S +    ED     +RP  L ++ GQ      + +FI AA+ R EALDHVL 
Sbjct: 1   MIESDRLISAKTADYEDVQDRAIRPTLLADYVGQPSVREQMDIFISAARNRQEALDHVLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A E+GV  ++TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIIANEMGVAIKTTSGPVLEKAGDLAAMLTNLEAGDVLFIDEIHRLSA 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEEILYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR GLLT+PL+DRFGI  R
Sbjct: 121 AVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGLLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY   DL  I+ R A+L+ + + +  A E+A RSRGTPRIA RLLRRVRD+AEV    
Sbjct: 181 LEFYNNADLTRIILRSARLSSVHIDEAGAFEMARRSRGTPRIANRLLRRVRDYAEVRADG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT  IAD AL  L +D  GFD +D R L  +   F GGPVG+E+++A +SE R  IED+
Sbjct: 241 RITANIADLALNMLKVDDQGFDHMDRRLLLAMIEKFDGGPVGVESLAAAISEERGTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           +EP++IQQGF+ RTPRGR++   A+QH G+
Sbjct: 301 LEPFLIQQGFMLRTPRGRMVTNHAYQHFGV 330


>gi|297183448|gb|ADI19580.1| holliday junction resolvasome, helicase subunit [uncultured
           Acidobacteria bacterium HF0770_27F21]
          Length = 344

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 187/318 (58%), Positives = 235/318 (73%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           VS+E      LRPRTLEE+ GQ +   NL+VFIEAA  R E LDHVL  GPPGLGKTTLA
Sbjct: 11  VSEESRFEVTLRPRTLEEYVGQRKVVDNLRVFIEAASKRNEPLDHVLLFGPPGLGKTTLA 70

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            ++A E+  + R+TSGPVI K GDLAA+LT++E+  VLFIDEIHRL   +EE+LYPAMED
Sbjct: 71  YIIAHEMDGDLRATSGPVIEKIGDLAAILTSVEENGVLFIDEIHRLPASIEELLYPAMED 130

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           +Q+D+++GEGPSARSVK+ + RFTL+ +TTR  LLT+PL+ RFGI  RLNFY  EDL  I
Sbjct: 131 YQIDIVIGEGPSARSVKLPIPRFTLVGSTTRAALLTSPLRSRFGIVFRLNFYTTEDLTKI 190

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           V   AK  G+    + A EIA RSRGTPRIA RLLRRVRDFAEV     I  ++A +AL 
Sbjct: 191 VFNSAKKLGVPTDADGALEIASRSRGTPRIANRLLRRVRDFAEVDGDGMINADVARSALQ 250

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
           +L +DKMGFD++D + +  I +NF GGPVG+ TI+A + E + AIED+ EPY+IQ GF+ 
Sbjct: 251 KLEVDKMGFDEIDRQLMLTIMQNFSGGPVGLNTIAAAIGEDKAAIEDIYEPYLIQLGFLA 310

Query: 312 RTPRGRLLMPIAWQHLGI 329
           RT RGR+   IA++H GI
Sbjct: 311 RTSRGRVATEIAYEHFGI 328


>gi|152976838|ref|YP_001376355.1| Holliday junction DNA helicase B [Bacillus cereus subsp. cytotoxis
           NVH 391-98]
 gi|189045780|sp|A7GTA2|RUVB_BACCN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|152025590|gb|ABS23360.1| Holliday junction DNA helicase RuvB [Bacillus cytotoxicus NVH
           391-98]
          Length = 333

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 187/329 (56%), Positives = 244/329 (74%), Gaps = 1/329 (0%)

Query: 5   EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E LLS   + EDAD+   LRP+TL ++ GQ +A  NL+VFIEAAK R E LDHVL  GPP
Sbjct: 3   ERLLSGESAYEDADLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLLYGPP 62

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT L+  DVLFIDEIHRL   +EE
Sbjct: 63  GLGKTTLANIIANEMGVNIRTTSGPAIERPGDLAAVLTALQPGDVLFIDEIHRLHRSIEE 122

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LYPAMEDF LD+++G+GP+ARSV+++L  FTL+ ATTR G L+ PL+DRFG+  RL +Y
Sbjct: 123 VLYPAMEDFCLDIVIGKGPTARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSRLEYY 182

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            ++ L  IV+R A++  + +   AA EIA R+RGTPRIA RLLRRVRDFA+V    TI  
Sbjct: 183 TVDQLSAIVERTAEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRGDGTIAM 242

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           EI   AL  L +DK+G D +D ++L  I   F GGPVG+ET+SA + E    IED+ EPY
Sbjct: 243 EITQMALELLQVDKLGLDHIDHKFLLGIIEKFRGGPVGLETVSATIGEESHTIEDVYEPY 302

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++Q GF+QRTPRGR++ P+A+QH G+++P
Sbjct: 303 LLQIGFLQRTPRGRIVTPLAYQHFGMEMP 331


>gi|317131996|ref|YP_004091310.1| Holliday junction DNA helicase RuvB [Ethanoligenens harbinense
           YUAN-3]
 gi|315469975|gb|ADU26579.1| Holliday junction DNA helicase RuvB [Ethanoligenens harbinense
           YUAN-3]
          Length = 348

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 189/328 (57%), Positives = 239/328 (72%), Gaps = 1/328 (0%)

Query: 7   LLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           +++ + + ED D    LRPRTL E+TGQ +   NLK+FIEAAK R EALDHVL  GPPGL
Sbjct: 9   IVTPDYTAEDVDAEQSLRPRTLAEYTGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGL 68

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLA V+A E+GVN R TSGP I K GDLAALLTNL   D+LFIDE+HRLS  VEE+L
Sbjct: 69  GKTTLAGVIANEMGVNLRVTSGPAIEKQGDLAALLTNLAPHDILFIDEVHRLSRSVEEVL 128

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           YPAMED+ LD+++G+GPSARS++++L RFTLI ATTR G LT+PL+DRFG+ +RL  Y  
Sbjct: 129 YPAMEDYALDIILGKGPSARSIRLDLPRFTLIGATTRAGQLTSPLRDRFGVLMRLELYTK 188

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           E+L  I+ R A +  +      A EIA R+RGTPR+A RLLRRVRDFA+V  +  IT+E 
Sbjct: 189 EELCGIITRSAGILQIDCEPGGAMEIAGRARGTPRVANRLLRRVRDFAQVIGSGVITQET 248

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           A  AL RL IDK+G D  D R L M+ R++GGGP GIET++A + E    +ED+ EPY++
Sbjct: 249 AGRALDRLEIDKLGLDATDRRMLGMLIRHYGGGPAGIETLAAAMGEEAVTLEDVCEPYLM 308

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           Q GF+ RTPRGR+    A+ HLG+  P 
Sbjct: 309 QVGFLMRTPRGRMATAAAYAHLGLTPPQ 336


>gi|50085686|ref|YP_047196.1| Holliday junction DNA helicase RuvB [Acinetobacter sp. ADP1]
 gi|68715457|sp|Q6F991|RUVB_ACIAD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|49531662|emb|CAG69374.1| holliday junction helicase, subunit B [Acinetobacter sp. ADP1]
          Length = 334

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 186/332 (56%), Positives = 241/332 (72%), Gaps = 2/332 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M DR  L+S     ED     +RP +L ++ GQ      +++FI AA+ R EALDH L  
Sbjct: 1   MHDR--LISGTEKPEDHFDRAIRPTSLADYIGQPVVREQMEIFIGAARGRGEALDHTLIF 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++ARE+G N +STSGPV+ +AGDLAA+LTNLE+ DVLFIDEIHRLS +
Sbjct: 59  GPPGLGKTTLANIIAREMGGNLKSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPV 118

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EEILYPAMED+QLD+M+GEGP+ARS+K++L  FTL+AATTR GLLT+PL+DRFGI  RL
Sbjct: 119 IEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRL 178

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY +EDL  IV R A L  + +T   A E+A RSRGTPRIA RLLRRVRD+A+V     
Sbjct: 179 EFYSVEDLTHIVTRSANLMNVPMTSTGAAEVARRSRGTPRIANRLLRRVRDYAQVKGTGE 238

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +T ++A  AL  L +DK G D LD RYL+M+   F GGP G+E ++A ++E    +ED+I
Sbjct: 239 VTHDMAQRALDMLNVDKDGLDTLDRRYLSMLLERFDGGPAGVEALAAAMAEDSGTLEDVI 298

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EPY+IQQG++ RT RGR+   +A+   G+  P
Sbjct: 299 EPYLIQQGYVMRTARGRIATNMAYLQFGLTPP 330


>gi|285019188|ref|YP_003376899.1| holliday junction resolvasome, helicase subunit protein
           [Xanthomonas albilineans GPE PC73]
 gi|283474406|emb|CBA16907.1| putative holliday junction resolvasome, helicase subunit protein
           [Xanthomonas albilineans]
          Length = 347

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 192/326 (58%), Positives = 241/326 (73%), Gaps = 1/326 (0%)

Query: 5   EGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E +++ + + ED  + + +RP+ L+++ GQ      L ++IEAAKAR EALDHVL  GPP
Sbjct: 5   ERIIASSATGEDEAVEASIRPKRLDDYLGQQPVREQLSIYIEAAKARGEALDHVLIFGPP 64

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTL+ V+A ELGVN R TSGPVI KAGDLAALLTNL+  DVLF+DEIHRLS +VEE
Sbjct: 65  GLGKTTLSHVIANELGVNLRVTSGPVIEKAGDLAALLTNLQPHDVLFVDEIHRLSPVVEE 124

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LYPAMEDFQ+D+M+GEGP+ARS+KI+L  FTLI ATTR GLLT PL+DRFGI  RL FY
Sbjct: 125 VLYPAMEDFQIDIMIGEGPAARSIKIDLPPFTLIGATTRAGLLTAPLRDRFGIVQRLAFY 184

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
             E+L  IV+R A + G+A   +   EIA R+RGTPRIA RLLRRVRDFA+V     I  
Sbjct: 185 TPEELARIVRRSAGILGIACDADGCAEIARRARGTPRIANRLLRRVRDFAQVRAGGHIDL 244

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
            +A AA   L +D  GFD+LD R L  I   F GGPVG+E+++A LSE R  +ED+IEPY
Sbjct: 245 AVAQAATQMLKVDAEGFDELDRRLLRTIIDYFDGGPVGVESLAASLSEERGTLEDVIEPY 304

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGI 329
           +IQQG++ RT RGR+    A+ HLG+
Sbjct: 305 LIQQGYLIRTARGRMATNKAYLHLGL 330


>gi|218899589|ref|YP_002448000.1| Holliday junction DNA helicase RuvB [Bacillus cereus G9842]
 gi|228902948|ref|ZP_04067089.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus
           thuringiensis IBL 4222]
 gi|228910256|ref|ZP_04074074.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus
           thuringiensis IBL 200]
 gi|228967496|ref|ZP_04128524.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|226725451|sp|B7IIT2|RUVB_BACC2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|218540807|gb|ACK93201.1| Holliday junction DNA helicase RuvB [Bacillus cereus G9842]
 gi|228792211|gb|EEM39785.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|228849420|gb|EEM94256.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus
           thuringiensis IBL 200]
 gi|228856732|gb|EEN01251.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus
           thuringiensis IBL 4222]
          Length = 333

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 187/329 (56%), Positives = 244/329 (74%), Gaps = 1/329 (0%)

Query: 5   EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E LLS   + ED+D+   LRP+TL ++ GQ +A  NL+VFIEAAK R E LDHVL  GPP
Sbjct: 3   ERLLSGESAYEDSDLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLLYGPP 62

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT L+  DVLFIDEIHRL   +EE
Sbjct: 63  GLGKTTLANIIANEMGVNVRTTSGPAIERPGDLAAVLTALQPGDVLFIDEIHRLHRSIEE 122

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTR G L+ PL+DRFG+  RL +Y
Sbjct: 123 VLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSRLEYY 182

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            ++ L  IV+R A++  + +   AA EIA R+RGTPRIA RLLRRVRDFA+V    T+T 
Sbjct: 183 TVDQLSAIVERTAEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRGNGTVTM 242

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           EI   AL  L +DK+G D +D + L  I   F GGPVG+ET+SA + E    IED+ EPY
Sbjct: 243 EITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSATIGEESHTIEDVYEPY 302

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++Q GF+QRTPRGR++ P+A++H G++IP
Sbjct: 303 LLQIGFLQRTPRGRIVTPLAYEHFGMEIP 331


>gi|332982455|ref|YP_004463896.1| Holliday junction DNA helicase subunit RuvB [Mahella australiensis
           50-1 BON]
 gi|332700133|gb|AEE97074.1| Holliday junction DNA helicase subunit RuvB [Mahella australiensis
           50-1 BON]
          Length = 333

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 185/335 (55%), Positives = 249/335 (74%), Gaps = 3/335 (0%)

Query: 1   MMDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M DR  +++  ++Q D ++ + LRPRTL E+ GQ      L++FI+AAK R EALDHVL 
Sbjct: 1   MSDR--IIAAELAQNDIELETALRPRTLSEYIGQNSVKEKLRIFIDAAKQRHEALDHVLL 58

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A E+GVN R TSGPVI +AGDLAA+LTN+ + DVLFIDEIHRL+ 
Sbjct: 59  YGPPGLGKTTLANIIANEMGVNIRITSGPVIERAGDLAAILTNMAEYDVLFIDEIHRLNR 118

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEEILYPAMED+ LD+++G+GP ARS++I+L  FTLI ATTR GLLT PL+DRFG+  R
Sbjct: 119 AVEEILYPAMEDYALDIVIGKGPGARSLRIDLPHFTLIGATTRAGLLTPPLRDRFGVINR 178

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L  Y I +LK IV R A L  + + +  ACEIA R+RGTPR+A RLL+RVRD+A++    
Sbjct: 179 LEMYAINELKEIVIRSAYLLKVGIDERGACEIARRARGTPRVANRLLKRVRDYAQIKADG 238

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT ++A A L  L +D++G D++D + L+++   FGGGPVG++T+SA ++E  D IED+
Sbjct: 239 IITYDVAKAGLDLLEVDELGLDEVDRKMLSIMIDKFGGGPVGLDTLSAAVNEQADTIEDV 298

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
            EPY++Q GFI RTPRGR+   +A++H+GI    R
Sbjct: 299 YEPYLLQLGFIDRTPRGRIATRLAYEHMGIPFEDR 333


>gi|228993159|ref|ZP_04153081.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus
           pseudomycoides DSM 12442]
 gi|228999209|ref|ZP_04158790.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus
           mycoides Rock3-17]
 gi|229006756|ref|ZP_04164390.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus
           mycoides Rock1-4]
 gi|228754617|gb|EEM04028.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus
           mycoides Rock1-4]
 gi|228760554|gb|EEM09519.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus
           mycoides Rock3-17]
 gi|228766618|gb|EEM15259.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus
           pseudomycoides DSM 12442]
          Length = 333

 Score =  375 bits (964), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 188/329 (57%), Positives = 243/329 (73%), Gaps = 1/329 (0%)

Query: 5   EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E LLS   + EDAD+   LRP+TL ++ GQ +A  NL+VFIEAAK R E LDHVL  GPP
Sbjct: 3   ERLLSGESAYEDADLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLLYGPP 62

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT L+  DVLFIDEIHRL   +EE
Sbjct: 63  GLGKTTLANIIANEMGVNIRTTSGPAIERPGDLAAVLTALQPGDVLFIDEIHRLHRSIEE 122

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTR G L+ PL+DRFG+  RL +Y
Sbjct: 123 VLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSRLEYY 182

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            ++ L  IV+R A++  + +   AA EIA R+RGTPRIA RLLRRVRDFA+V    TI  
Sbjct: 183 TVDQLSAIVERTAEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRSDGTIAM 242

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           EI   AL  L +DK+G D +D + L  I   F GGPVG+ET+SA + E    IED+ EPY
Sbjct: 243 EITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSATIGEESTTIEDVYEPY 302

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++Q GF+QRTPRGR++ P+A++H G+D+P
Sbjct: 303 LLQIGFLQRTPRGRIVTPLAYEHFGMDMP 331


>gi|16272266|ref|NP_438478.1| Holliday junction DNA helicase RuvB [Haemophilus influenzae Rd
           KW20]
 gi|260581220|ref|ZP_05849039.1| Holliday junction DNA helicase RuvB [Haemophilus influenzae RdAW]
 gi|1173331|sp|P44631|RUVB_HAEIN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|1573279|gb|AAC21975.1| Holliday junction DNA helicase (ruvB) [Haemophilus influenzae Rd
           KW20]
 gi|260092145|gb|EEW76089.1| Holliday junction DNA helicase RuvB [Haemophilus influenzae RdAW]
          Length = 335

 Score =  375 bits (964), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 181/315 (57%), Positives = 235/315 (74%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           ED     +RP+ L ++ GQ +    + +FI+AAK R +ALDH+L  GPPGLGKTTLA +V
Sbjct: 16  EDVIDRAIRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIV 75

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS  +EE+LYPAMED+QL
Sbjct: 76  ANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQL 135

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D+M+GEGP+ARS+K++L  FTL+ ATTR G LT+PL+DRFGI  RL FY +EDL +IV R
Sbjct: 136 DIMIGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVAR 195

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A    L +  +AA E+A RSRGTPRIA RLLRRVRD+A+V +   I+  +A  AL  L 
Sbjct: 196 SAGCLNLELEQQAAFEVARRSRGTPRIANRLLRRVRDYADVRNGGIISINVAKQALSMLD 255

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D  GFD LD + L+ +   F GGPVG++ ++A + E RD IED++EPY+IQQGF+QRTP
Sbjct: 256 VDDAGFDYLDRKLLSAVIERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTP 315

Query: 315 RGRLLMPIAWQHLGI 329
           RGR+     ++H G+
Sbjct: 316 RGRIATSQTYRHFGL 330


>gi|302391488|ref|YP_003827308.1| Holliday junction DNA helicase subunit RuvB [Acetohalobium
           arabaticum DSM 5501]
 gi|302203565|gb|ADL12243.1| Holliday junction DNA helicase subunit RuvB [Acetohalobium
           arabaticum DSM 5501]
          Length = 333

 Score =  375 bits (964), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 181/330 (54%), Positives = 243/330 (73%), Gaps = 1/330 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M DR      N S ++ D SL RP++L E+ GQ +  +NL++FIEAAK R EALDHVL  
Sbjct: 1   MEDRIVSPDENTSDKELDSSL-RPKSLNEYIGQEKVKNNLEIFIEAAKGRGEALDHVLLY 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A E+GVN + TSGP I + GDLAA+LTNL   DVLFIDEIHRL+ +
Sbjct: 60  GPPGLGKTTLANIIAEEMGVNIKITSGPAIERPGDLAAILTNLNPNDVLFIDEIHRLNRM 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDF LD+++G+GPSARSV+++L++FTL+ ATT+ G LT+PL+DRFG+  RL
Sbjct: 120 VEEVLYPAMEDFALDIIIGDGPSARSVRLDLAQFTLVGATTKAGQLTSPLRDRFGVISRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
             Y  E+L+ IV R A++  + + D  A E+A RSRGTPRIA RLL+RVRD+A+V     
Sbjct: 180 KLYSTEELQQIVYRSARVLNVKIDDAGALELAKRSRGTPRIANRLLKRVRDYAQVRADGV 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           IT E+A A L  L +D++G D +D + L  +   FGGGPVG+ T+SA + E    IED+ 
Sbjct: 240 ITEEVAKAGLEMLEVDELGLDDIDRKMLQTLINKFGGGPVGLNTLSAAVGEEEATIEDVY 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           EPY++Q G++QRTPRGR+   +A++HL +D
Sbjct: 300 EPYLLQIGYLQRTPRGRVATKLAYEHLDLD 329


>gi|120612873|ref|YP_972551.1| Holliday junction DNA helicase RuvB [Acidovorax citrulli AAC00-1]
 gi|166231458|sp|A1TUY9|RUVB_ACIAC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|120591337|gb|ABM34777.1| Holliday junction DNA helicase RuvB [Acidovorax citrulli AAC00-1]
          Length = 354

 Score =  375 bits (964), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 187/316 (59%), Positives = 235/316 (74%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           QE+A    LRP+ L+E+ GQ +A   L++FI AA+ R EALDHVL  GPPGLGKTTL+ +
Sbjct: 26  QEEALERALRPKLLQEYVGQAKAREQLEIFIGAARKREEALDHVLLFGPPGLGKTTLSHI 85

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +A ELGVN R TSGPV+ K  DLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+Q
Sbjct: 86  IAAELGVNLRQTSGPVLEKPKDLAALLTNLEKNDVLFIDEIHRLSPVVEEILYPALEDYQ 145

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           +D+M+GEGP+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  E+L  IV 
Sbjct: 146 IDIMIGEGPAARSIKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTPEELSRIVT 205

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A L    +  + A EIA RSRGTPRIA RLLRRVRD+A+V     IT++IA  AL  L
Sbjct: 206 RSAGLLNAPIDAQGAFEIARRSRGTPRIANRLLRRVRDYADVKGDGRITQDIAQRALAML 265

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D  GFD +D + L  +   F GGPVG++ I+A + E    IED+IEPY+IQQG++QRT
Sbjct: 266 DVDPQGFDVMDRKLLEAVVHRFDGGPVGLDNIAASIGEEPGTIEDVIEPYLIQQGYLQRT 325

Query: 314 PRGRLLMPIAWQHLGI 329
           PRGR+    A++HLG+
Sbjct: 326 PRGRIATLAAFRHLGV 341


>gi|90408540|ref|ZP_01216697.1| Holliday junction DNA helicase [Psychromonas sp. CNPT3]
 gi|90310359|gb|EAS38487.1| Holliday junction DNA helicase [Psychromonas sp. CNPT3]
          Length = 333

 Score =  375 bits (964), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 184/333 (55%), Positives = 242/333 (72%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S     +D+ +   +RP+ L ++ GQ +  + +++FIEAA+ R EALDH+L 
Sbjct: 1   MIEEDRLISAVEKNDDSFVDRAIRPKLLSDYEGQPQVNTQMEIFIEAARQRGEALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA EL VN ++TSGP++ KAGDLAALLTNLE+ DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLAHIVANELKVNIKTTSGPILEKAGDLAALLTNLEENDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPAFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +YE+  L  IV R +K   L +    A EIA RSRGTPRIA RLLRRVRD+A+V    
Sbjct: 181 LEYYELIPLTKIVMRSSKHFNLNLDMSGATEIAKRSRGTPRIANRLLRRVRDYAQVKKES 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I   +A+ AL  L +D  GFD +D + L  I   F GGPVG++ ++A + E ++ IED+
Sbjct: 241 MINANVANKALDMLNVDGQGFDYMDRKLLLAILDTFQGGPVGLDNLAAAIGEEKETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           +EPY+IQQGF+QRTPRGR+     +QH G   P
Sbjct: 301 LEPYLIQQGFLQRTPRGRIATSRTYQHFGFSTP 333


>gi|196044785|ref|ZP_03112019.1| Holliday junction DNA helicase RuvB [Bacillus cereus 03BB108]
 gi|225866401|ref|YP_002751779.1| Holliday junction DNA helicase RuvB [Bacillus cereus 03BB102]
 gi|229186659|ref|ZP_04313820.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           BGSC 6E1]
 gi|254767410|sp|C1ESW4|RUVB_BACC3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|196024273|gb|EDX62946.1| Holliday junction DNA helicase RuvB [Bacillus cereus 03BB108]
 gi|225788653|gb|ACO28870.1| Holliday junction DNA helicase RuvB [Bacillus cereus 03BB102]
 gi|228596918|gb|EEK54577.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           BGSC 6E1]
          Length = 333

 Score =  375 bits (964), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 186/329 (56%), Positives = 244/329 (74%), Gaps = 1/329 (0%)

Query: 5   EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E LLS   + EDAD+   LRP+TL ++ GQ +A  NL+VFIEAAK R E LDHVL  GPP
Sbjct: 3   ERLLSGESAYEDADLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLLYGPP 62

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT+L+  DVLFIDEIHRL   +EE
Sbjct: 63  GLGKTTLANIIANEMGVNVRTTSGPAIERPGDLAAVLTSLQPGDVLFIDEIHRLHRSIEE 122

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTR G L+ PL+DRFG+  RL +Y
Sbjct: 123 VLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSRLEYY 182

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            ++ L  IV+R  ++  + +   AA EIA R+RGTPRIA RLLRRVRDFA+V    T+T 
Sbjct: 183 TVDQLSAIVERTGEVFEVEINSLAALEIARRARGTPRIANRLLRRVRDFAQVRGNGTVTM 242

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           EI   AL  L +DK+G D +D + L  I   F GGPVG+ET+SA + E    IED+ EPY
Sbjct: 243 EITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSATIGEESHTIEDVYEPY 302

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++Q GF+QRTPRGR++ P+A++H G+++P
Sbjct: 303 LLQIGFLQRTPRGRIVTPLAYEHFGMEMP 331


>gi|332290324|ref|YP_004421176.1| Holliday junction DNA helicase RuvB [Gallibacterium anatis UMN179]
 gi|330433220|gb|AEC18279.1| Holliday junction DNA helicase RuvB [Gallibacterium anatis UMN179]
          Length = 332

 Score =  375 bits (964), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 185/330 (56%), Positives = 244/330 (73%), Gaps = 1/330 (0%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + ++S    +E+  I   +RP+ L+++ GQ      + +FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRIISPTAKEEEEYIDRAIRPKLLQDYVGQPHVREQMDIFIKAAKMRNDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPYDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            +EE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ ATTR G LT+PL+DRFGI  R
Sbjct: 121 AIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY IEDL +IV R A    L + ++AA EIA RSRGTPRI  RLLRRVRD+A+V +  
Sbjct: 181 LEFYSIEDLTSIVVRSANCLSLQIDEQAAHEIARRSRGTPRIVNRLLRRVRDYADVKNDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I+ EIA  AL  L ID  GFD +D + L  I   F GGPVG++ ++A + E ++ IED+
Sbjct: 241 FISVEIAKLALTMLDIDSEGFDFMDRKLLMAIIERFDGGPVGLDNLAAAIGEEKETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           +EPY+IQQGF+QRTPRGR+     ++H G+
Sbjct: 301 LEPYLIQQGFLQRTPRGRIATLHTYRHFGV 330


>gi|255291935|dbj|BAH90423.1| Holliday junction DNA helicase RuvB [uncultured bacterium]
          Length = 356

 Score =  375 bits (964), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 187/321 (58%), Positives = 237/321 (73%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           ++E+A    LRP+ L+E+ GQ +A   L++FI AA+ R EALDHVL  GPPGLGKTTL+ 
Sbjct: 27  AREEALERALRPKMLQEYVGQAKAREQLEIFIGAARKRGEALDHVLLFGPPGLGKTTLSH 86

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++A ELGVN R TSGPV+ K  DLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+
Sbjct: 87  IIAHELGVNLRQTSGPVLEKPRDLAALLTNLEKNDVLFIDEIHRLSPVVEEILYPALEDY 146

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           Q+D+M+GEGP+ARS+K+++  FTL+ ATTR G+LTNPL+DRFGI  RL FY  E+L  IV
Sbjct: 147 QIDIMIGEGPAARSIKLDVQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTPEELTRIV 206

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R A L  +    E A EIA RSRGTPRIA RLLRRVRD+A+V     I+R+IA  AL  
Sbjct: 207 TRSAGLLQVETDAEGAFEIARRSRGTPRIANRLLRRVRDYADVKGRGQISRQIAHDALAM 266

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D  GFD +D + L  +   F GGPVG++ I+A + E    IED+IEPY+IQQG++QR
Sbjct: 267 LDVDPEGFDVMDRKLLEAVIHRFDGGPVGLDNIAASIGEEPGTIEDVIEPYLIQQGYLQR 326

Query: 313 TPRGRLLMPIAWQHLGIDIPH 333
           TPRGR+    A++HLG+  P 
Sbjct: 327 TPRGRVATLAAYRHLGVAPPQ 347


>gi|167750455|ref|ZP_02422582.1| hypothetical protein EUBSIR_01431 [Eubacterium siraeum DSM 15702]
 gi|167656606|gb|EDS00736.1| hypothetical protein EUBSIR_01431 [Eubacterium siraeum DSM 15702]
 gi|291557652|emb|CBL34769.1| Holliday junction DNA helicase, RuvB subunit [Eubacterium siraeum
           V10Sc8a]
          Length = 350

 Score =  375 bits (964), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 189/330 (57%), Positives = 241/330 (73%), Gaps = 3/330 (0%)

Query: 3   DREG--LLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           D EG  ++    S ED D+   LRPR L E+ GQ +   NL+V+I+AAK R E+LDHVL 
Sbjct: 12  DDEGARIVEPQFSAEDTDVEFSLRPRKLNEYIGQEKVKENLQVYIQAAKKRNESLDHVLL 71

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A E+GVNF+ TSGP I K G+LAALLT L+  DVLF+DEIHRLS 
Sbjct: 72  YGPPGLGKTTLAGIIANEMGVNFKVTSGPAIEKPGELAALLTGLQAGDVLFVDEIHRLSR 131

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEEILYPA+ED  LD+M+G+GPSA+S++++L+RFTLI ATTR G LT PL+DRFG+ +R
Sbjct: 132 QVEEILYPALEDCVLDIMIGKGPSAQSIRVDLNRFTLIGATTRAGQLTGPLRDRFGVIMR 191

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L  Y  ++L  IV R + +  +      A EIA RSRGTPRIA RLL+RVRDFAEV    
Sbjct: 192 LEMYTPDELCDIVMRSSVILSIPCDRSGAMEIAKRSRGTPRIANRLLKRVRDFAEVMGNG 251

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT+E+AD AL RL IDK+G D LD R+LTMI   + GGPVG+ET+++ L E    +ED+
Sbjct: 252 KITKEMADIALNRLEIDKLGLDSLDKRFLTMIINGYNGGPVGLETLASALGEESVTLEDV 311

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
            EPY++Q GFI RTPRGR    +A++HLG+
Sbjct: 312 CEPYLMQLGFISRTPRGRCATELAYKHLGL 341


>gi|229175094|ref|ZP_04302611.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           MM3]
 gi|228608390|gb|EEK65695.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           MM3]
          Length = 333

 Score =  375 bits (963), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 187/329 (56%), Positives = 244/329 (74%), Gaps = 1/329 (0%)

Query: 5   EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E LLS   + ED+D+   LRP+TL ++ GQ +A  NL+VFIEAAK R E LDHVL  GPP
Sbjct: 3   ERLLSGESAYEDSDLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLLYGPP 62

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT L+  DVLFIDEIHRL   +EE
Sbjct: 63  GLGKTTLANIIANEMGVNVRTTSGPAIERPGDLAAVLTALQPGDVLFIDEIHRLHRSIEE 122

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTR G L+ PL+DRFG+  RL +Y
Sbjct: 123 VLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSRLEYY 182

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            ++ L  IV+R A++  + +   AA EIA R+RGTPRIA RLLRRVRDFA+V    T+T 
Sbjct: 183 TVDQLSEIVERTAEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRGNGTVTM 242

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           EI   AL  L +DK+G D +D + L  I   F GGPVG+ET+SA + E    IED+ EPY
Sbjct: 243 EITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSATIGEESHTIEDVYEPY 302

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++Q GF+QRTPRGR++ P+A++H G++IP
Sbjct: 303 LLQIGFLQRTPRGRIVTPLAYEHFGMEIP 331


>gi|47566610|ref|ZP_00237432.1| Holliday junction DNA helicase RuvB [Bacillus cereus G9241]
 gi|229158035|ref|ZP_04286106.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           ATCC 4342]
 gi|47556640|gb|EAL14972.1| Holliday junction DNA helicase RuvB [Bacillus cereus G9241]
 gi|228625488|gb|EEK82244.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           ATCC 4342]
          Length = 333

 Score =  375 bits (963), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 187/329 (56%), Positives = 244/329 (74%), Gaps = 1/329 (0%)

Query: 5   EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E LLS   + EDAD+   LRP+TL ++ GQ +A  NL+VFIEAAK R E LDHVL  GPP
Sbjct: 3   ERLLSGESAYEDADLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLLYGPP 62

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT L+  DVLFIDEIHRL   +EE
Sbjct: 63  GLGKTTLANIIANEMGVNVRTTSGPAIERPGDLAAVLTALQPGDVLFIDEIHRLHRSIEE 122

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTR G L+ PL+DRFG+  RL +Y
Sbjct: 123 VLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSRLEYY 182

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            ++ L  IV+R A++  + +   AA EIA R+RGTPRIA RLLRRVRDFA+V    T+T 
Sbjct: 183 TVDQLSEIVERTAEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRGNGTVTM 242

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           EI   AL  L +DK+G D +D + L  I   F GGPVG+ET+SA + E    IED+ EPY
Sbjct: 243 EITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSATIGEESHTIEDVYEPY 302

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++Q GF+QRTPRGR++ P+A++H G+++P
Sbjct: 303 LLQIGFLQRTPRGRIVTPLAYEHFGMEMP 331


>gi|291550304|emb|CBL26566.1| Holliday junction DNA helicase, RuvB subunit [Ruminococcus torques
           L2-14]
          Length = 332

 Score =  375 bits (963), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 178/317 (56%), Positives = 239/317 (75%), Gaps = 1/317 (0%)

Query: 14  QEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           +ED+ I   LRP+ L E+ GQ +A   L ++IEAAKAR EALDHVLF GPPGLGKTTLA 
Sbjct: 12  EEDSKIEGQLRPQLLSEYIGQEKAKKTLSIYIEAAKARGEALDHVLFYGPPGLGKTTLAG 71

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++A E+GVN + TSGP I K G++AA+L  L++ DVLF+DEIHRL+  VEE+LYPAMED+
Sbjct: 72  IIANEMGVNMKITSGPAIEKPGEMAAILNGLQEHDVLFVDEIHRLNRQVEEVLYPAMEDY 131

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            +D+M+G+GP ARSV++NL +FTL+ ATTR G+LT PL+DRFG+   L  Y  E+LKTI+
Sbjct: 132 AIDIMIGKGPGARSVRLNLPKFTLVGATTRAGMLTAPLRDRFGVVHHLELYNEEELKTII 191

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R A + G+ + +E A E+A RSRGTPR+A RLL+RVRDFA+V +   IT+E+A+ AL  
Sbjct: 192 LRSAHVLGVEIEEEGAMELARRSRGTPRLANRLLKRVRDFAQVKYDGVITKEVANYALDL 251

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +DK G D +D   L  +   F GGPVG+ET++A +SE    +ED+ EPY+++ GFIQR
Sbjct: 252 LDVDKFGLDHIDRNILITMIEKFQGGPVGLETLAASISEDAGTLEDVYEPYLLKNGFIQR 311

Query: 313 TPRGRLLMPIAWQHLGI 329
           TPRGR++  +A+QHLGI
Sbjct: 312 TPRGRVVTELAYQHLGI 328


>gi|228987673|ref|ZP_04147785.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228772058|gb|EEM20512.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 333

 Score =  375 bits (963), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 187/329 (56%), Positives = 244/329 (74%), Gaps = 1/329 (0%)

Query: 5   EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E LLS   + EDAD+   LRP+TL ++ GQ +A  NL+VFIEAAK R E LDHVL  GPP
Sbjct: 3   ERLLSGESAYEDADLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLLYGPP 62

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT L+  DVLFIDEIHRL   +EE
Sbjct: 63  GLGKTTLANIIANEMGVNVRTTSGPAIERPGDLAAVLTALQPGDVLFIDEIHRLHRSIEE 122

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTR G L+ PL+DRFG+  RL +Y
Sbjct: 123 VLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSRLEYY 182

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            ++ L  IV+R A++  + +   AA EIA R+RGTPRIA RLLRRVRDFA+V    T+T 
Sbjct: 183 TVDQLSEIVERTAEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRGNGTVTM 242

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           EI   AL  L +DK+G D +D + L  I   F GGPVG+ET+SA + E    IED+ EPY
Sbjct: 243 EITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSATIGEESHTIEDVYEPY 302

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++Q GF+QRTPRGR++ P+A++H G+++P
Sbjct: 303 LLQIGFLQRTPRGRIVTPLAYKHFGMEMP 331


>gi|255320812|ref|ZP_05361987.1| holliday junction DNA helicase RuvB [Acinetobacter radioresistens
           SK82]
 gi|262379412|ref|ZP_06072568.1| Holliday junction DNA helicase RuvB [Acinetobacter radioresistens
           SH164]
 gi|255302189|gb|EET81431.1| holliday junction DNA helicase RuvB [Acinetobacter radioresistens
           SK82]
 gi|262298869|gb|EEY86782.1| Holliday junction DNA helicase RuvB [Acinetobacter radioresistens
           SH164]
          Length = 334

 Score =  375 bits (963), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 186/333 (55%), Positives = 243/333 (72%), Gaps = 2/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M DR  L+S +   ED     +RP +L+++ GQ      + +FI AA+ R EALDH L  
Sbjct: 1   MQDR--LISGSEKPEDHFDRAIRPTSLDDYIGQPVVREQMGIFIGAARGRGEALDHTLIF 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++ARE+G N +STSGPV+ +AGDLAA+LTNLE+ DVLFIDEIHRLS +
Sbjct: 59  GPPGLGKTTLANIIAREMGGNLKSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPV 118

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EEILYPAMED+QLD+M+GEGP+ARS+K++L  FTL+AATTR GLLT+PL+DRFGI  RL
Sbjct: 119 IEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRL 178

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY +EDL  IV R A L  + +T E + E+A R+RGTPRIA RLLRRVRD+A+V     
Sbjct: 179 EFYSVEDLTHIVTRSASLMDVPITQEGSREVARRARGTPRIANRLLRRVRDYAQVKGTGE 238

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +T+E+A  AL  L +DK G D LD RYL+M+   F GGP G+E ++A ++E    +ED+I
Sbjct: 239 VTQEMAQRALDMLNVDKDGLDTLDRRYLSMLLERFDGGPAGVEALAAAMAEDSGTLEDVI 298

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY+IQQG+  RT RGR+   +A+   G+  P 
Sbjct: 299 EPYLIQQGYAMRTARGRIATNMAYLQFGMTPPE 331


>gi|255656789|ref|ZP_05402198.1| Holliday junction DNA helicase RuvB [Clostridium difficile
           QCD-23m63]
 gi|296452381|ref|ZP_06894082.1| crossover junction ATP-dependent DNA helicase RuvB [Clostridium
           difficile NAP08]
 gi|296877730|ref|ZP_06901757.1| crossover junction ATP-dependent DNA helicase RuvB [Clostridium
           difficile NAP07]
 gi|296258711|gb|EFH05605.1| crossover junction ATP-dependent DNA helicase RuvB [Clostridium
           difficile NAP08]
 gi|296431263|gb|EFH17083.1| crossover junction ATP-dependent DNA helicase RuvB [Clostridium
           difficile NAP07]
          Length = 339

 Score =  375 bits (963), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 180/332 (54%), Positives = 245/332 (73%), Gaps = 1/332 (0%)

Query: 3   DREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           D   +++  +  ED DI + LRP+TLE++ GQ ++   L +FIEAAK+R E LDHVL  G
Sbjct: 6   DENRIITSTMKVEDIDIENSLRPKTLEDYLGQEKSKEQLSIFIEAAKSRNEQLDHVLLYG 65

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+GVN R TSGP I +AGDLAA+LTNL + DVLFIDEIHR++  V
Sbjct: 66  PPGLGKTTLASIIANEMGVNLRITSGPAIERAGDLAAILTNLNENDVLFIDEIHRINRSV 125

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMEDF LD+++G+GPSARS++++L +FTLI ATTR G+LTNPL+DRFG+  +L+
Sbjct: 126 EEVLYPAMEDFCLDIIIGKGPSARSIRLDLPKFTLIGATTRAGMLTNPLRDRFGVICKLD 185

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y +++L  IV R + +    +    A E+A RSRGTPRIA RLL+RVRDFA+V     I
Sbjct: 186 YYTVDELSKIVLRSSNILDAKIQSNGALELAKRSRGTPRIANRLLKRVRDFAQVRADGKI 245

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T ++A  AL  L +D +G D +D + L  I   F GGPVG++T++A + E R+ IED+ E
Sbjct: 246 TDKVAKDALELLGVDSLGLDFVDEKLLMTIIEKFRGGPVGLDTLAASIGEDRNTIEDVYE 305

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           PY++Q GFI R PRGR+ MP+A++HL I  P+
Sbjct: 306 PYLLQLGFINRGPRGRVAMPLAYEHLKIPYPN 337


>gi|126700421|ref|YP_001089318.1| Holliday junction DNA helicase RuvB [Clostridium difficile 630]
 gi|254976400|ref|ZP_05272872.1| Holliday junction DNA helicase RuvB [Clostridium difficile
           QCD-66c26]
 gi|255093786|ref|ZP_05323264.1| Holliday junction DNA helicase RuvB [Clostridium difficile CIP
           107932]
 gi|255101976|ref|ZP_05330953.1| Holliday junction DNA helicase RuvB [Clostridium difficile
           QCD-63q42]
 gi|255307844|ref|ZP_05352015.1| Holliday junction DNA helicase RuvB [Clostridium difficile ATCC
           43255]
 gi|255315537|ref|ZP_05357120.1| Holliday junction DNA helicase RuvB [Clostridium difficile
           QCD-76w55]
 gi|255518200|ref|ZP_05385876.1| Holliday junction DNA helicase RuvB [Clostridium difficile
           QCD-97b34]
 gi|255651316|ref|ZP_05398218.1| Holliday junction DNA helicase RuvB [Clostridium difficile
           QCD-37x79]
 gi|260684380|ref|YP_003215665.1| Holliday junction DNA helicase RuvB [Clostridium difficile CD196]
 gi|260688039|ref|YP_003219173.1| Holliday junction DNA helicase RuvB [Clostridium difficile R20291]
 gi|306521148|ref|ZP_07407495.1| Holliday junction DNA helicase RuvB [Clostridium difficile
           QCD-32g58]
 gi|123363077|sp|Q183N8|RUVB_CLOD6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|115251858|emb|CAJ69693.1| Holliday junction ATP-dependent DNA helicase RuvB [Clostridium
           difficile]
 gi|260210543|emb|CBA65073.1| holliday junction DNA helicase [Clostridium difficile CD196]
 gi|260214056|emb|CBE06220.1| holliday junction DNA helicase [Clostridium difficile R20291]
          Length = 339

 Score =  375 bits (963), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 180/332 (54%), Positives = 245/332 (73%), Gaps = 1/332 (0%)

Query: 3   DREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           D   +++  +  ED DI + LRP+TLE++ GQ ++   L +FIEAAK+R E LDHVL  G
Sbjct: 6   DENRIITSTMKMEDIDIENSLRPKTLEDYLGQEKSKEQLSIFIEAAKSRNEQLDHVLLYG 65

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+GVN R TSGP I +AGDLAA+LTNL + DVLFIDEIHR++  V
Sbjct: 66  PPGLGKTTLASIIANEMGVNLRITSGPAIERAGDLAAILTNLNENDVLFIDEIHRINRSV 125

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMEDF LD+++G+GPSARS++++L +FTLI ATTR G+LTNPL+DRFG+  +L+
Sbjct: 126 EEVLYPAMEDFCLDIIIGKGPSARSIRLDLPKFTLIGATTRAGMLTNPLRDRFGVICKLD 185

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y +++L  IV R + +    +    A E+A RSRGTPRIA RLL+RVRDFA+V     I
Sbjct: 186 YYTVDELSKIVLRSSSILDAEIQSNGALELAKRSRGTPRIANRLLKRVRDFAQVRADGKI 245

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T ++A  AL  L +D +G D +D + L  I   F GGPVG++T++A + E R+ IED+ E
Sbjct: 246 TDKVAKDALELLGVDSLGLDFVDEKLLMTIIEKFRGGPVGLDTLAASIGEDRNTIEDVYE 305

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           PY++Q GFI R PRGR+ MP+A++HL I  P+
Sbjct: 306 PYLLQLGFINRGPRGRVAMPLAYEHLKIPYPN 337


>gi|303241603|ref|ZP_07328102.1| Holliday junction DNA helicase RuvB [Acetivibrio cellulolyticus
           CD2]
 gi|302590823|gb|EFL60572.1| Holliday junction DNA helicase RuvB [Acetivibrio cellulolyticus
           CD2]
          Length = 330

 Score =  375 bits (963), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 189/329 (57%), Positives = 242/329 (73%), Gaps = 2/329 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M DR  L+  NV++ED D S LRPR L E+ GQ +   NL VFIEAAK R EALDHVL  
Sbjct: 1   MEDR--LIGCNVNEEDVDESSLRPRRLNEYIGQKKVKENLVVFIEAAKKRKEALDHVLLY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A ELGVN R TSGP I K GDLAA+LTNL + DVLFIDEIHRL+  
Sbjct: 59  GPPGLGKTTLASIIASELGVNIRITSGPAIEKPGDLAAILTNLGNYDVLFIDEIHRLNRS 118

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILYPAMED+ LD+++G+GPSARS++++L +FTLI ATTR GLLT+PL+DRFG+  +L
Sbjct: 119 VEEILYPAMEDYALDIIIGKGPSARSIRLDLPKFTLIGATTRAGLLTSPLRDRFGVINKL 178

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
             Y  ++LK IV+R A +  + + ++A+ EIA RSRGTPRIA R+L+RVRDFA+V     
Sbjct: 179 EMYTPKELKAIVERSAGILSIGIEEDASEEIARRSRGTPRIANRILKRVRDFAQVKGEGL 238

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           IT+EIA  +L  L ID +G D +D   L  I   F GGPVG++T++A   E  + IED+ 
Sbjct: 239 ITKEIASMSLDALEIDPIGLDGVDRSLLMSIIDKFAGGPVGLDTLAATTGEETNTIEDVY 298

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           EPY++Q GFI +TPRGR+   +A+ H G+
Sbjct: 299 EPYLLQLGFINKTPRGRVATKLAYDHFGL 327


>gi|196039287|ref|ZP_03106593.1| Holliday junction DNA helicase RuvB [Bacillus cereus NVH0597-99]
 gi|228917057|ref|ZP_04080616.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|196029914|gb|EDX68515.1| Holliday junction DNA helicase RuvB [Bacillus cereus NVH0597-99]
 gi|228842585|gb|EEM87674.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
          Length = 333

 Score =  375 bits (963), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 186/329 (56%), Positives = 244/329 (74%), Gaps = 1/329 (0%)

Query: 5   EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E LLS   + EDAD+   LRP+TL ++ GQ +A  NL+VFIEAAK R E LDHVL  GPP
Sbjct: 3   ERLLSGESAYEDADLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLLYGPP 62

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT+L+  DVLFIDEIHRL   +EE
Sbjct: 63  GLGKTTLANIIANEMGVNVRTTSGPAIERPGDLAAVLTSLQPGDVLFIDEIHRLHRSIEE 122

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTR G L+ PL+DRFG+  RL +Y
Sbjct: 123 VLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSRLEYY 182

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            ++ L  IV+R  ++  + +   AA EIA R+RGTPRIA RLLRRVRDFA+V    T+T 
Sbjct: 183 TVDQLSAIVERTGEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRGNGTVTM 242

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           EI   AL  L +DK+G D +D + L  I   F GGPVG+ET+SA + E    IED+ EPY
Sbjct: 243 EITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSATIGEESHTIEDVYEPY 302

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++Q GF+QRTPRGR++ P+A++H G+++P
Sbjct: 303 LLQIGFLQRTPRGRIVTPLAYEHFGMEMP 331


>gi|326318905|ref|YP_004236577.1| Holliday junction DNA helicase RuvB [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323375741|gb|ADX48010.1| Holliday junction DNA helicase RuvB [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 353

 Score =  375 bits (963), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 186/316 (58%), Positives = 235/316 (74%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           QE+A    LRP+ L+E+ GQ +A   L++FI AA+ R EALDHVL  GPPGLGKTTL+ +
Sbjct: 25  QEEALERALRPKLLQEYVGQAKAREQLEIFIGAARKREEALDHVLLFGPPGLGKTTLSHI 84

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +A ELGVN R TSGPV+ K  DLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+Q
Sbjct: 85  IAAELGVNLRQTSGPVLEKPKDLAALLTNLEKNDVLFIDEIHRLSPVVEEILYPALEDYQ 144

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           +D+M+GEGP+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  E+L  IV 
Sbjct: 145 IDIMIGEGPAARSIKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTPEELSRIVT 204

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A L    +  + + EIA RSRGTPRIA RLLRRVRD+A+V     IT++IA  AL  L
Sbjct: 205 RSAGLLNAPIDAQGSFEIARRSRGTPRIANRLLRRVRDYADVKGDGRITQDIAQRALAML 264

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D  GFD +D + L  +   F GGPVG++ I+A + E    IED+IEPY+IQQG++QRT
Sbjct: 265 DVDPQGFDVMDRKLLEAVVHRFDGGPVGLDNIAASIGEEPGTIEDVIEPYLIQQGYLQRT 324

Query: 314 PRGRLLMPIAWQHLGI 329
           PRGR+    A++HLG+
Sbjct: 325 PRGRIATLAAFRHLGV 340


>gi|229198548|ref|ZP_04325251.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           m1293]
 gi|228584933|gb|EEK43048.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           m1293]
          Length = 333

 Score =  375 bits (962), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 186/329 (56%), Positives = 244/329 (74%), Gaps = 1/329 (0%)

Query: 5   EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E LLS   + EDAD+   LRP+TL ++ GQ +A  NL+VFIEAAK R E LDHVL  GPP
Sbjct: 3   ERLLSGESAYEDADLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLLYGPP 62

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT+L+  DVLFIDEIHRL   +EE
Sbjct: 63  GLGKTTLANIIANEMGVNVRTTSGPAIERPGDLAAVLTSLQPGDVLFIDEIHRLHRSIEE 122

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTR G L+ PL+DRFG+  RL +Y
Sbjct: 123 VLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSRLEYY 182

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            ++ L  IV+R  ++  + +   AA EIA R+RGTPRIA RLLRRVRDFA+V    T+T 
Sbjct: 183 TVDQLSEIVERTGEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRGNGTVTM 242

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           EI   AL  L +DK+G D +D + L  I   F GGPVG+ET+SA + E    IED+ EPY
Sbjct: 243 EITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSATIGEESHTIEDVYEPY 302

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++Q GF+QRTPRGR++ P+A++H G+++P
Sbjct: 303 LLQIGFLQRTPRGRIVTPLAYEHFGMEMP 331


>gi|324328323|gb|ADY23583.1| Holliday junction DNA helicase RuvA [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 333

 Score =  375 bits (962), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 186/329 (56%), Positives = 244/329 (74%), Gaps = 1/329 (0%)

Query: 5   EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E LLS   + EDAD+   LRP+TL ++ GQ +A  NL+VFIEAAK R E LDHVL  GPP
Sbjct: 3   ERLLSGESAYEDADLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLLYGPP 62

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT+L+  DVLFIDEIHRL   +EE
Sbjct: 63  GLGKTTLANIIANEMGVNVRTTSGPAIERPGDLAAVLTSLQPGDVLFIDEIHRLHRSIEE 122

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTR G L+ PL+DRFG+  RL +Y
Sbjct: 123 VLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSRLEYY 182

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            ++ L  IV+R  ++  + +   AA EIA R+RGTPRIA RLLRRVRDFA+V    T+T 
Sbjct: 183 TVDQLSAIVERTGEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRGNGTVTM 242

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           EI   AL  L +DK+G D +D + L  I   F GGPVG+ET+SA + E    IED+ EPY
Sbjct: 243 EITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSATIGEESHTIEDVYEPY 302

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++Q GF+QRTPRGR++ P+A++H G+++P
Sbjct: 303 LLQIGFLQRTPRGRIVTPLAYEHFGMEMP 331


>gi|306821135|ref|ZP_07454751.1| crossover junction ATP-dependent DNA helicase RuvB [Eubacterium
           yurii subsp. margaretiae ATCC 43715]
 gi|304550828|gb|EFM38803.1| crossover junction ATP-dependent DNA helicase RuvB [Eubacterium
           yurii subsp. margaretiae ATCC 43715]
          Length = 334

 Score =  375 bits (962), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 177/324 (54%), Positives = 241/324 (74%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           +++    +ED   + LRP+TL E+ GQ +A   L +FI+A+K+R E+LDHVL  GPPGLG
Sbjct: 9   IINTAFKKEDEGETDLRPKTLSEYIGQKKAVDQLDIFIKASKSRNESLDHVLLYGPPGLG 68

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTTL+ ++A E+  N + TSGP I +AGDLAALLTNL++ DVLFIDEIHR++  VEE+LY
Sbjct: 69  KTTLSHIIANEMNSNIKITSGPAIERAGDLAALLTNLQEGDVLFIDEIHRVNRSVEEVLY 128

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           PAMED+ +D+++G+GPSARS+++++ +FTLI ATTR G+LT+PL+DRFGI + L  Y  +
Sbjct: 129 PAMEDYCIDIIIGKGPSARSIRLDIPKFTLIGATTRTGMLTSPLRDRFGIILNLELYGTD 188

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           DL  I+ R A +  + +  +AA EIA RSRGTPRIA R+L+RVRD+A+V     IT EIA
Sbjct: 189 DLLKIILRSANILNIPIKKDAAIEIAKRSRGTPRIANRMLKRVRDYAQVLGDGVITNEIA 248

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           D ALL L ID +G D LD R L  + RNF GGPVGI+TISA + E ++ IED+ EP++IQ
Sbjct: 249 DKALLMLGIDSLGLDSLDTRILKTMIRNFDGGPVGIDTISAAVGEDKETIEDVCEPFLIQ 308

Query: 307 QGFIQRTPRGRLLMPIAWQHLGID 330
            GF+ RTPRGR++    + H GI+
Sbjct: 309 NGFLIRTPRGRIVSDAVYSHFGIE 332


>gi|229086982|ref|ZP_04219139.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           Rock3-44]
 gi|228696358|gb|EEL49186.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           Rock3-44]
          Length = 333

 Score =  375 bits (962), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 187/329 (56%), Positives = 243/329 (73%), Gaps = 1/329 (0%)

Query: 5   EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E LLS   + EDAD+   LRP+TL ++ GQ +A  NL+VFIEAAK R E LDHVL  GPP
Sbjct: 3   ERLLSGESAYEDADLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLLYGPP 62

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT L+  DVLFIDEIHRL   +EE
Sbjct: 63  GLGKTTLANIIANEMGVNIRTTSGPAIERPGDLAAVLTALQPGDVLFIDEIHRLHRSIEE 122

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTR G L+ PL+DRFG+  RL +Y
Sbjct: 123 VLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSRLEYY 182

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            ++ L  IV+R A++  + +   AA EIA R+RGTPRIA RLLRRVRDFA+V    TI  
Sbjct: 183 TVDQLSAIVERTAEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRSDGTIAM 242

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           EI   AL  L +DK+G D +D + L  I   F GGPVG+ET+SA + E    IED+ EPY
Sbjct: 243 EITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSATIGEESTTIEDVYEPY 302

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++Q GF+QRTPRGR++ P+A++H G+++P
Sbjct: 303 LLQIGFLQRTPRGRIVTPLAYEHFGMEMP 331


>gi|299769121|ref|YP_003731147.1| Holliday junction DNA helicase RuvB [Acinetobacter sp. DR1]
 gi|298699209|gb|ADI89774.1| Holliday junction DNA helicase RuvB [Acinetobacter sp. DR1]
          Length = 334

 Score =  375 bits (962), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 186/333 (55%), Positives = 241/333 (72%), Gaps = 2/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M DR  L+S     ED     +RP +L ++ GQ      +++FI AA+ R EALDH L  
Sbjct: 1   MQDR--LISGAEKPEDHFDRAIRPTSLADYIGQPVVREQMEIFIGAARGRGEALDHTLIF 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++ARE+G N +STSGPV+ +AGDLAA+LTNLE+ DVLFIDEIHRLS +
Sbjct: 59  GPPGLGKTTLANIIAREMGGNLKSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPV 118

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EEILYPAMED+QLD+M+GEGP+ARS+K++L  FTL+AATTR GLLT+PL+DRFGI  RL
Sbjct: 119 IEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRL 178

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY +EDL  IV R A L  + +T E A E+A R+RGTPRIA RLLRRVRD+A+V     
Sbjct: 179 EFYSVEDLTHIVSRSANLMNVPITVEGAEEVARRARGTPRIANRLLRRVRDYAQVKGTGE 238

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +T E+A  AL  L +DK G D LD RYL+M+   F GGP G+E ++A ++E    +ED+I
Sbjct: 239 VTHEMAQRALDMLNVDKAGLDTLDRRYLSMLLERFDGGPAGVEALAAAMAEDSGTLEDVI 298

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY+IQQG++ RT RGR+    ++   G+  P 
Sbjct: 299 EPYLIQQGYVMRTARGRIATNQSYLQFGMTPPE 331


>gi|226311453|ref|YP_002771347.1| Holliday junction ATP-dependent DNA helicase [Brevibacillus brevis
           NBRC 100599]
 gi|254767414|sp|C0ZAN4|RUVB_BREBN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|226094401|dbj|BAH42843.1| Holliday junction ATP-dependent DNA helicase [Brevibacillus brevis
           NBRC 100599]
          Length = 332

 Score =  374 bits (961), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 186/327 (56%), Positives = 237/327 (72%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD   + +    +EDA    LRPR L E+ GQ     NLK+FIEAAK R E+LDHVL  G
Sbjct: 1   MDSRIITTHMNWEEDAAELSLRPRYLNEYIGQQHVKENLKIFIEAAKMRKESLDHVLLYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTL+Q++A ELGVN R+TSGP I + GDLAA+LTNL++ DVLFIDEIHRL+  V
Sbjct: 61  PPGLGKTTLSQIIANELGVNIRTTSGPAIERPGDLAAILTNLQEGDVLFIDEIHRLNRSV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTR G+L+ PL+DRFG+  RL 
Sbjct: 121 EEVLYPAMEDFALDIIIGKGPSARSVRLDLPPFTLVGATTRAGMLSAPLRDRFGVVNRLE 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY + +L  IV R A +  + + +  A EIA RSRGTPR+A RLL+RVRDFA+V     I
Sbjct: 181 FYTVPELTFIVSRAADILQVVIREGGAEEIARRSRGTPRVANRLLKRVRDFAQVKGEGVI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T EIA  AL RL +D  G D +D + L  I   F GGPVG++TI+A + E    +ED+ E
Sbjct: 241 TTEIAKEALERLQVDACGLDHIDHKLLLAIIDRFDGGPVGLDTIAATIGEESQTVEDVCE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLG 328
           PY++Q GF+QRTPRGR+L P A+QH G
Sbjct: 301 PYLMQIGFMQRTPRGRVLTPSAYQHFG 327


>gi|169632719|ref|YP_001706455.1| Holliday junction DNA helicase RuvB [Acinetobacter baumannii SDF]
 gi|169795064|ref|YP_001712857.1| Holliday junction DNA helicase RuvB [Acinetobacter baumannii AYE]
 gi|184159150|ref|YP_001847489.1| Holliday junction DNA helicase RuvB [Acinetobacter baumannii ACICU]
 gi|213158274|ref|YP_002320325.1| Holliday junction DNA helicase RuvB [Acinetobacter baumannii
           AB0057]
 gi|215482613|ref|YP_002324805.1| Holliday junction DNA helicase RuvB [Acinetobacter baumannii
           AB307-0294]
 gi|239501032|ref|ZP_04660342.1| Holliday junction DNA helicase RuvB [Acinetobacter baumannii AB900]
 gi|260556548|ref|ZP_05828766.1| Holliday junction DNA helicase RuvB [Acinetobacter baumannii ATCC
           19606]
 gi|301344816|ref|ZP_07225557.1| Holliday junction DNA helicase RuvB [Acinetobacter baumannii AB056]
 gi|301510229|ref|ZP_07235466.1| Holliday junction DNA helicase RuvB [Acinetobacter baumannii AB058]
 gi|301595122|ref|ZP_07240130.1| Holliday junction DNA helicase RuvB [Acinetobacter baumannii AB059]
 gi|332851088|ref|ZP_08433197.1| Holliday junction DNA helicase RuvB [Acinetobacter baumannii
           6013150]
 gi|332869663|ref|ZP_08438851.1| Holliday junction DNA helicase RuvB [Acinetobacter baumannii
           6013113]
 gi|332875978|ref|ZP_08443764.1| Holliday junction DNA helicase RuvB [Acinetobacter baumannii
           6014059]
 gi|172044075|sp|A3M7W1|RUVB_ACIBT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|226725449|sp|B7GYB5|RUVB_ACIB3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|226725450|sp|B7I5A9|RUVB_ACIB5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|238688102|sp|B0VDI5|RUVB_ACIBY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|238688252|sp|B0VT89|RUVB_ACIBS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|238690990|sp|B2HWT3|RUVB_ACIBC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|169147991|emb|CAM85854.1| holliday junction helicase, subunit B [Acinetobacter baumannii AYE]
 gi|169151511|emb|CAP00276.1| holliday junction helicase, subunit B [Acinetobacter baumannii]
 gi|183210744|gb|ACC58142.1| Holliday junction resolvasome, helicase subunit [Acinetobacter
           baumannii ACICU]
 gi|193078071|gb|ABO13005.2| holliday junction helicase subunit B [Acinetobacter baumannii ATCC
           17978]
 gi|213057434|gb|ACJ42336.1| Holliday junction DNA helicase RuvB [Acinetobacter baumannii
           AB0057]
 gi|213988745|gb|ACJ59044.1| Holliday junction DNA helicase RuvB [Acinetobacter baumannii
           AB307-0294]
 gi|260409807|gb|EEX03107.1| Holliday junction DNA helicase RuvB [Acinetobacter baumannii ATCC
           19606]
 gi|322509063|gb|ADX04517.1| ruvB [Acinetobacter baumannii 1656-2]
 gi|323519044|gb|ADX93425.1| Holliday junction DNA helicase RuvB [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332730252|gb|EGJ61577.1| Holliday junction DNA helicase RuvB [Acinetobacter baumannii
           6013150]
 gi|332732565|gb|EGJ63798.1| Holliday junction DNA helicase RuvB [Acinetobacter baumannii
           6013113]
 gi|332735844|gb|EGJ66885.1| Holliday junction DNA helicase RuvB [Acinetobacter baumannii
           6014059]
          Length = 334

 Score =  374 bits (961), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 186/333 (55%), Positives = 240/333 (72%), Gaps = 2/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M DR  L+S     ED     +RP +L ++ GQ      +++FI AA+ R EALDH L  
Sbjct: 1   MQDR--LISGTEKPEDHFDRAIRPTSLADYIGQPVVREQMEIFIGAARGRGEALDHTLIF 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++ARE+G N +STSGPV+ +AGDLAA+LTNLE+ DVLFIDEIHRLS +
Sbjct: 59  GPPGLGKTTLANIIAREMGGNLKSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPV 118

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EEILYPAMED+QLD+M+GEGP+ARS+K++L  FTL+AATTR GLLT+PL+DRFGI  RL
Sbjct: 119 IEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRL 178

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY +EDL  IV R A L  + +T E A E+A RSRGTPRIA RLLRRVRD+A+V     
Sbjct: 179 EFYSVEDLTHIVSRSANLMDVPITVEGAEEVARRSRGTPRIANRLLRRVRDYAQVKGTGE 238

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +  E+A  AL  L +DK G D LD RYL+M+   F GGP G+E ++A ++E    +ED+I
Sbjct: 239 VNHEMAQRALDMLNVDKAGLDTLDRRYLSMLLERFDGGPAGVEALAAAMAEDSGTLEDVI 298

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY+IQQG++ RT RGR+    ++   G+  P 
Sbjct: 299 EPYLIQQGYVMRTARGRIATNQSYLQFGMTPPE 331


>gi|73667298|ref|YP_303314.1| Holliday junction DNA helicase B [Ehrlichia canis str. Jake]
 gi|97190039|sp|Q3YRD9|RUVB_EHRCJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|72394439|gb|AAZ68716.1| Holliday junction DNA helicase subunit RuvB [Ehrlichia canis str.
           Jake]
          Length = 329

 Score =  374 bits (961), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 185/324 (57%), Positives = 240/324 (74%), Gaps = 3/324 (0%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           + +L      ED     +RP  L+EF GQ    +NLK+FI AA  R E +DHVL  GPPG
Sbjct: 2   KNILQSTECLEDQQNVSIRPNLLDEFIGQSSVVNNLKIFINAAYTRKEPMDHVLLYGPPG 61

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLA ++A+EL VNFRST+GP+++KAGDLAA+LTNL+ +D+LFIDEIHRL+  +EEI
Sbjct: 62  LGKTTLAHIIAKELKVNFRSTAGPLLSKAGDLAAILTNLQAKDILFIDEIHRLNRNIEEI 121

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LY AMEDF LD++VGEG  AR+++++L +FTL+ ATTR+GLL+NPL+DRFGIPI L FY 
Sbjct: 122 LYSAMEDFCLDIIVGEGCGARTLRVDLPKFTLVGATTRIGLLSNPLRDRFGIPIHLEFYS 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA-HAKTITR 243
            E+L  ++QR AK+    ++D  A EI++R+RGTPRIA RLLRR+RDF EV  H KTIT 
Sbjct: 182 TEELIKVIQRAAKVIKTDISDSGAQEISLRARGTPRIALRLLRRIRDFIEVTEHNKTITD 241

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
             AD ALLRL IDK+G D+ D++YL  I  +    P GI+TIS+GLSE    IE+ IEPY
Sbjct: 242 TFADKALLRLGIDKLGLDRQDIQYLKFIHDS--NNPTGIDTISSGLSEDTGNIEETIEPY 299

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHL 327
           +I+  FIQRTPRGR++   A  +L
Sbjct: 300 LIKINFIQRTPRGRVITQKAISYL 323


>gi|312897340|ref|ZP_07756766.1| Holliday junction DNA helicase RuvB [Megasphaera micronuciformis
           F0359]
 gi|310621558|gb|EFQ05092.1| Holliday junction DNA helicase RuvB [Megasphaera micronuciformis
           F0359]
          Length = 340

 Score =  374 bits (961), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 188/312 (60%), Positives = 237/312 (75%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP  L+E+ GQ +A  NL+VFI AAK R EALDHVL  GPPGLGKTTLA ++A E GV 
Sbjct: 21  LRPHYLKEYIGQEKAKRNLEVFIAAAKMRKEALDHVLLYGPPGLGKTTLAGIIANEAGVG 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           FR TSGP I +AGDLAALLTNL++RDVLFIDEIHRLS  VEE+LY AMED+ LD+++G+G
Sbjct: 81  FRITSGPAIERAGDLAALLTNLQERDVLFIDEIHRLSHSVEEVLYAAMEDYALDIVIGKG 140

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSARSV+I+L  FTLI ATT+VG L +PL+DRFG+  RL FY+ E+L  I++R A +  +
Sbjct: 141 PSARSVRIDLPPFTLIGATTQVGRLASPLRDRFGVISRLEFYKPEELVLIIERTADILDM 200

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  + A EIA RSRGTPRIA RLL+RVRDFA+VA A  IT+ IA  AL RL +D  G D
Sbjct: 201 RIERDGALEIAGRSRGTPRIANRLLKRVRDFAQVADAPAITKNIASEALNRLEVDACGLD 260

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           + D R LT I   F GGPVG++TI+A +SE  DA+ED+ EP+++Q GF+ RTPRGR+   
Sbjct: 261 RTDRRVLTAIIEKFDGGPVGLDTIAAAISESVDAVEDVYEPFLMQLGFLNRTPRGRVATA 320

Query: 322 IAWQHLGIDIPH 333
            A++HLG+ +P 
Sbjct: 321 AAYRHLGLAVPQ 332


>gi|90417111|ref|ZP_01225039.1| Holliday junction DNA helicase RuvB [marine gamma proteobacterium
           HTCC2207]
 gi|90331127|gb|EAS46383.1| Holliday junction DNA helicase RuvB [marine gamma proteobacterium
           HTCC2207]
          Length = 330

 Score =  374 bits (961), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 185/322 (57%), Positives = 241/322 (74%), Gaps = 1/322 (0%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           +V++E  D +L RP +L+++ GQ      L +FIEAA+ R+E LDH L  GPPGLGKTTL
Sbjct: 2   SVAEERFDRAL-RPESLKDYVGQPVVVEQLSIFIEAARKRSEPLDHTLVFGPPGLGKTTL 60

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           A ++A E+ V  ++TSGPV+ KAGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPAME
Sbjct: 61  AHIIANEMQVALKTTSGPVLEKAGDLAALLTNLEPGDVLFIDEIHRLSPVVEEILYPAME 120

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           D+QLD+++GEGP+ARS+K++L  FTL+ ATTR GLLT PL+DRFGI  RL FY   DL  
Sbjct: 121 DYQLDIVIGEGPAARSIKLDLPPFTLVGATTRAGLLTAPLRDRFGIVQRLEFYSETDLTH 180

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           IVQR   +  +++  + A EIA RSRGTPRIA RLLRRVRD+AEV    +I+ EIADAAL
Sbjct: 181 IVQRAGAILNVSIDAKGAAEIARRSRGTPRIANRLLRRVRDYAEVKSDGSISAEIADAAL 240

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
             LA+D+ GFD  D R L  +   F GGPVG+++++A +SE R  IED++EPY+IQQG++
Sbjct: 241 NMLAVDQRGFDHQDRRLLLTLMEKFEGGPVGVDSLAAAMSEERGTIEDVLEPYLIQQGYL 300

Query: 311 QRTPRGRLLMPIAWQHLGIDIP 332
            RT RGR+   +A+++ G+  P
Sbjct: 301 MRTSRGRMATRMAYEYFGLQRP 322


>gi|269468528|gb|EEZ80182.1| Holliday junction resolvasome, helicase subunit [uncultured SUP05
           cluster bacterium]
          Length = 341

 Score =  374 bits (961), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 179/330 (54%), Positives = 244/330 (73%), Gaps = 1/330 (0%)

Query: 1   MMDREGLLS-RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++++ L+S ++   ED  ++ +RP +L E+ GQ +  S + +FIEAAK R + LDH L 
Sbjct: 1   MIEQDSLVSAQDQDNEDIVMTSVRPSSLSEYIGQDDVKSQMALFIEAAKKRGDVLDHSLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA V+A ++G   + T+GPV+ ++GDLAA+LT LE  D+LFIDEIHRL+ 
Sbjct: 61  YGPPGLGKTTLAHVIAHQMGAGLKQTAGPVLERSGDLAAILTKLEPYDILFIDEIHRLNP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPA+EDF+LD+MVGEG +A SV++ L  FTLI ATTR G+LT+PL+DRFGI  R
Sbjct: 121 VVEEILYPALEDFKLDIMVGEGVAAHSVQLELPPFTLIGATTRAGMLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY ++DLK IV+R A + G+ +    A EIA RSRGTPRIA RLLRRVRDFA +    
Sbjct: 181 LQFYNVKDLKKIVERSANILGIEIESNGALEIAKRSRGTPRIANRLLRRVRDFATIKTNG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I ++IA+ AL  L +D++G +QLD  YL +I + F GGPVG++T+S  + E R  +ED+
Sbjct: 241 IIHQQIANEALAVLKVDELGLEQLDRDYLHIITQKFSGGPVGLDTLSTAIGEERGTLEDM 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           +EPY+IQQGF+ RTPRGR    +A+ HLG+
Sbjct: 301 VEPYLIQQGFVMRTPRGRSATDLAYSHLGL 330


>gi|229032071|ref|ZP_04188053.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           AH1271]
 gi|228729263|gb|EEL80258.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           AH1271]
          Length = 333

 Score =  374 bits (961), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 186/329 (56%), Positives = 244/329 (74%), Gaps = 1/329 (0%)

Query: 5   EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E LLS   + ED+D+   LRP+TL ++ GQ +A  NL+VFIEAAK R E LDHVL  GPP
Sbjct: 3   ERLLSGESAYEDSDLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLLYGPP 62

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT L+  DVLFIDEIHRL   +EE
Sbjct: 63  GLGKTTLANIIANEMGVNVRTTSGPAIERPGDLAAVLTALQPGDVLFIDEIHRLHRSIEE 122

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTR G L+ PL+DRFG+  RL +Y
Sbjct: 123 VLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSRLEYY 182

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            ++ L  IV+R A++  + +   AA EIA R+RGTPRIA RLLRRVRDFA+V    T+T 
Sbjct: 183 TVDQLSEIVERTAEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRGNGTVTM 242

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           EI   AL  L +DK+G D +D + L  I   F GGPVG+ET+SA + E    IED+ EPY
Sbjct: 243 EITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSATIGEESHTIEDVYEPY 302

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++Q GF+QRTPRGR++ P+A++H G+++P
Sbjct: 303 LLQIGFLQRTPRGRIVTPLAYEHFGMEMP 331


>gi|229019644|ref|ZP_04176454.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           AH1273]
 gi|229025882|ref|ZP_04182278.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           AH1272]
 gi|228735434|gb|EEL86033.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           AH1272]
 gi|228741647|gb|EEL91837.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           AH1273]
          Length = 333

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 187/329 (56%), Positives = 242/329 (73%), Gaps = 1/329 (0%)

Query: 5   EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E LLS     EDAD+   LRP+TL ++ GQ +A  NL+VFIEAAK R E LDHVL  GPP
Sbjct: 3   ERLLSGESGYEDADLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLLYGPP 62

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT L+  DVLFIDEIHRL   +EE
Sbjct: 63  GLGKTTLANIIANEMGVNIRTTSGPAIERPGDLAAVLTALQPGDVLFIDEIHRLHRSIEE 122

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTR G L+ PL+DRFG+  RL +Y
Sbjct: 123 VLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSRLEYY 182

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            ++ L  IV+R A++  + +   AA EIA R+RGTPRIA RLLRRVRDFA+V    TI  
Sbjct: 183 TVDQLSAIVERTAEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRSDGTIAM 242

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           EI   AL  L +DK+G D +D + L  I   F GGPVG+ET+SA + E    IED+ EPY
Sbjct: 243 EITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSATIGEESHTIEDVYEPY 302

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++Q GF+QRTPRGR++ P+A++H G+++P
Sbjct: 303 LLQIGFLQRTPRGRIVTPLAYEHFGMEMP 331


>gi|148359112|ref|YP_001250319.1| Holliday junction DNA helicase RuvB [Legionella pneumophila str.
           Corby]
 gi|296107160|ref|YP_003618860.1| holliday junction DNA helicase RuvB [Legionella pneumophila 2300/99
           Alcoy]
 gi|148280885|gb|ABQ54973.1| Holliday junction DNA helicase RuvB [Legionella pneumophila str.
           Corby]
 gi|295649061|gb|ADG24908.1| holliday junction DNA helicase RuvB [Legionella pneumophila 2300/99
           Alcoy]
          Length = 318

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 178/307 (57%), Positives = 231/307 (75%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP +L E+ GQ    S +++FI AA+ R + LDHVL  GPPGLGKTTLA ++A E+GVN
Sbjct: 5   IRPLSLSEYVGQDSVSSQMQIFINAARKRNDPLDHVLIFGPPGLGKTTLANIIAHEMGVN 64

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGPVI +AGD+AA+LTNL+  DVLFIDEIHRLS ++EEILYPAMED++LD+M+GEG
Sbjct: 65  IRQTSGPVIERAGDIAAILTNLQQNDVLFIDEIHRLSPVIEEILYPAMEDYKLDIMIGEG 124

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+K+ L  FTLI ATTR GLLT+PL+DRFGI  RL +Y ++ L  IV R A L G+
Sbjct: 125 PAARSIKLELPPFTLIGATTRAGLLTSPLRDRFGIVQRLEYYSVDSLTKIVARSAHLLGV 184

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
               E A EIA+RSRGTPRIA RLLRRVRD++EV     IT ++A  AL  L +D+ GFD
Sbjct: 185 PTKPEGAREIALRSRGTPRIANRLLRRVRDYSEVKGNGIITVDMAQQALEMLEVDQHGFD 244

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +  +F GGPVGI++I+A + E +  IED++EP++IQQGF+ RTPRGR+   
Sbjct: 245 LMDRKLLLAVIEHFNGGPVGIDSIAAAIGEEKGTIEDVLEPFLIQQGFLMRTPRGRIATS 304

Query: 322 IAWQHLG 328
            A+QH G
Sbjct: 305 KAYQHFG 311


>gi|307610274|emb|CBW99838.1| hypothetical protein LPW_15991 [Legionella pneumophila 130b]
          Length = 318

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 178/307 (57%), Positives = 231/307 (75%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP +L E+ GQ    S +++FI AA+ R + LDHVL  GPPGLGKTTLA ++A E+GVN
Sbjct: 5   IRPLSLSEYVGQDSVSSQMQIFINAARKRNDPLDHVLIFGPPGLGKTTLANIIAHEMGVN 64

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGPVI +AGD+AA+LTNL+  DVLFIDEIHRLS ++EEILYPAMED++LD+M+GEG
Sbjct: 65  IRQTSGPVIERAGDIAAILTNLQQNDVLFIDEIHRLSPVIEEILYPAMEDYKLDIMIGEG 124

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+K+ L  FTLI ATTR GLLT+PL+DRFGI  RL +Y ++ L  IV R A L G+
Sbjct: 125 PAARSIKLELPPFTLIGATTRAGLLTSPLRDRFGIVQRLEYYSVDSLTQIVARSAHLLGV 184

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
               E A EIA+RSRGTPRIA RLLRRVRD++EV     IT ++A  AL  L +D+ GFD
Sbjct: 185 PTKPEGAREIALRSRGTPRIANRLLRRVRDYSEVKGNGIITVDMAQQALEMLEVDQHGFD 244

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +  +F GGPVGI++I+A + E +  IED++EP++IQQGF+ RTPRGR+   
Sbjct: 245 LMDRKLLLAVIEHFNGGPVGIDSIAAAIGEEKGTIEDVLEPFLIQQGFLMRTPRGRIATS 304

Query: 322 IAWQHLG 328
            A+QH G
Sbjct: 305 KAYQHFG 311


>gi|226952124|ref|ZP_03822588.1| Holliday junction helicase, subunit B [Acinetobacter sp. ATCC
           27244]
 gi|226837133|gb|EEH69516.1| Holliday junction helicase, subunit B [Acinetobacter sp. ATCC
           27244]
          Length = 332

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 185/333 (55%), Positives = 242/333 (72%), Gaps = 2/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M DR  L+S     ED     +RP +L ++ GQ      +++FI AA+ R EALDH L  
Sbjct: 1   MQDR--LISGTEKPEDHFDRAIRPTSLADYIGQPVVREQMEIFIGAARGRGEALDHTLIF 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++ARE+G N +STSGPV+ +AGDLAA+LTNLE+ DVLFIDEIHRLS +
Sbjct: 59  GPPGLGKTTLANIIAREMGGNLKSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPV 118

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EEILYPAMED+QLD+M+GEGP+ARS+K++L  FTL+AATTR GLLT+PL+DRFGI  RL
Sbjct: 119 IEEILYPAMEDYQLDIMIGEGPAARSIKLDLPAFTLVAATTRAGLLTSPLRDRFGIVQRL 178

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY +EDL  IV R A L  + +T E + EIA R+RGTPRIA RLLRRVRD+A+V     
Sbjct: 179 EFYSVEDLTHIVTRSANLMDVPITHEGSTEIARRARGTPRIANRLLRRVRDYAQVKGTGE 238

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +T+++A  AL  L +DK G D LD RYL+M+   F G P G+E ++A ++E    +ED+I
Sbjct: 239 VTQDMAQRALDMLNVDKAGLDTLDRRYLSMLLERFEGRPTGVEALAAAMAEDSGTLEDVI 298

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY+IQQG++ RT RGR+   +A+   G+  P 
Sbjct: 299 EPYLIQQGYVMRTARGRIATNMAYLQFGMTPPE 331


>gi|262368600|ref|ZP_06061929.1| Holliday junction helicase [Acinetobacter johnsonii SH046]
 gi|262316278|gb|EEY97316.1| Holliday junction helicase [Acinetobacter johnsonii SH046]
          Length = 336

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 185/333 (55%), Positives = 243/333 (72%), Gaps = 2/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M DR  L+  +   ED     +RP +L+++ GQ      +++FI AA+ R EALDH L  
Sbjct: 1   MQDR--LIGGSEKPEDHIDRAIRPTSLDDYIGQPVVREQMEIFIGAARGRGEALDHTLIF 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++ARE+G N +STSGPV+ +AGDLAA+LTNLE+ DVLFIDEIHRLS +
Sbjct: 59  GPPGLGKTTLANIIAREMGGNLKSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPV 118

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EEILYPAMED+QLD+M+GEGP+ARS+K++L  FTL+AATTR GLLT+PL+DRFGI  RL
Sbjct: 119 IEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRL 178

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY + DL  IV R A L  + +T E + EIA RSRGTPRIA RLLRRVRD+A+V     
Sbjct: 179 EFYSVTDLTHIVTRSANLMDVPITREGSAEIARRSRGTPRIANRLLRRVRDYAQVKGTGE 238

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +T+++A  AL  L +DK G D LD RYL+M+   F GGP G+E ++A ++E    +ED+I
Sbjct: 239 VTQDMAQRALDMLNVDKDGLDTLDRRYLSMLLERFDGGPGGVEALAAAMAEDSGTLEDVI 298

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY+IQQG++ RT RGR+   +A+   G+  P 
Sbjct: 299 EPYLIQQGYVMRTARGRIATNMAYLQFGMTPPE 331


>gi|57239404|ref|YP_180540.1| Holliday junction DNA helicase RuvB [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58579374|ref|YP_197586.1| Holliday junction DNA helicase B [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58617429|ref|YP_196628.1| Holliday junction DNA helicase B [Ehrlichia ruminantium str.
           Gardel]
 gi|81311314|sp|Q5FG39|RUVB_EHRRG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|81819219|sp|Q5HAK4|RUVB_EHRRW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|57161483|emb|CAH58409.1| Holliday junction DNA helicase RuvB [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58417041|emb|CAI28154.1| Holliday junction DNA helicase RuvB [Ehrlichia ruminantium str.
           Gardel]
 gi|58418000|emb|CAI27204.1| Holliday junction DNA helicase RuvB [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 331

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 184/328 (56%), Positives = 242/328 (73%), Gaps = 3/328 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M  ++ L S    ++  +IS+ RP  L+EF GQ    SNLK+FI+AA  R E +DH+L  
Sbjct: 1   MFMKDILQSSECIEDQQNISM-RPNLLDEFIGQSSVVSNLKIFIDAAYERKEPIDHILLY 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A+EL VNFRST+GP+++KAGDLAA+LTNL+ RDVLFIDEIHRL+  
Sbjct: 60  GPPGLGKTTLAHIIAKELKVNFRSTAGPLLSKAGDLAAILTNLQARDVLFIDEIHRLNRN 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EEILY AMEDF LD++VGEG  AR++++++  FTLI ATTR+GLL+NPL+DRFGIP+ L
Sbjct: 120 IEEILYSAMEDFSLDIIVGEGCGARTLRVDIPPFTLIGATTRIGLLSNPLRDRFGIPMHL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  E+L  +++R AK+    +++  A EI++RSRGTPRIA RLLRR+RDF  V    T
Sbjct: 180 EFYSTEELTKVIKRAAKVIHTNISNNGAEEISLRSRGTPRIALRLLRRIRDFISVTKQDT 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           IT E AD ALLRL IDK+G D+ D++YL  I       P+GI+TIS+ LSE    IE+ I
Sbjct: 240 ITHEFADQALLRLGIDKLGLDRQDIKYLQFIYE--ANNPIGIDTISSALSEDTGNIEETI 297

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
           EPY+I+  FIQRTPRGR++   A  +L 
Sbjct: 298 EPYLIKINFIQRTPRGRVITQKAISYLN 325


>gi|292490336|ref|YP_003525775.1| Holliday junction DNA helicase RuvB [Nitrosococcus halophilus Nc4]
 gi|291578931|gb|ADE13388.1| Holliday junction DNA helicase RuvB [Nitrosococcus halophilus Nc4]
          Length = 348

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 186/326 (57%), Positives = 242/326 (74%), Gaps = 1/326 (0%)

Query: 6   GLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           GL+S   + ++A +   LRP  L ++ GQ +    ++VFI AA+AR EALDHVL  GPPG
Sbjct: 6   GLVSPQGASDEAVVEPSLRPAKLADYVGQPQVQEQMEVFIPAARARGEALDHVLIFGPPG 65

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTL+ +VA ELGVN R TSGPV+ + GDLAALLTNLE RDVLFIDEIHRLS +VEE+
Sbjct: 66  LGKTTLSHIVANELGVNLRQTSGPVLERPGDLAALLTNLEPRDVLFIDEIHRLSPVVEEV 125

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPAMED Q+D+M+GEGP+ARS+K++L  FTL+ ATTR GLLT+PL+DRFGI  RL FY+
Sbjct: 126 LYPAMEDRQIDIMIGEGPAARSIKLDLVPFTLVGATTRAGLLTSPLRDRFGIVQRLEFYD 185

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +E L  IV+R A++ G+ +    A E+A RSRGTPRIA RLLRRVRD+AEV     +T E
Sbjct: 186 VEHLVLIVERTARILGMVMEAGGALEVARRSRGTPRIANRLLRRVRDYAEVKGDGRVTHE 245

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +A  AL  L +D  GFD +D + L  +   F GGPVG+++++A +SE R  IED+IEP++
Sbjct: 246 VAKKALDLLDVDSNGFDTMDRKLLLAMIEKFDGGPVGVDSLAAAISEERGTIEDVIEPFL 305

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGID 330
           IQQGF+ RTPRGR+     + H G++
Sbjct: 306 IQQGFVMRTPRGRMATRHTYLHFGLE 331


>gi|163942170|ref|YP_001647054.1| Holliday junction DNA helicase B [Bacillus weihenstephanensis
           KBAB4]
 gi|229013637|ref|ZP_04170768.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus
           mycoides DSM 2048]
 gi|229062115|ref|ZP_04199440.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           AH603]
 gi|229076051|ref|ZP_04209022.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           Rock4-18]
 gi|229098894|ref|ZP_04229830.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           Rock3-29]
 gi|229105058|ref|ZP_04235710.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           Rock3-28]
 gi|229117920|ref|ZP_04247282.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           Rock1-3]
 gi|229135244|ref|ZP_04264042.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           BDRD-ST196]
 gi|229169163|ref|ZP_04296878.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           AH621]
 gi|229470532|sp|A9VIP6|RUVB_BACWK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|163864367|gb|ABY45426.1| Holliday junction DNA helicase RuvB [Bacillus weihenstephanensis
           KBAB4]
 gi|228614391|gb|EEK71501.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           AH621]
 gi|228648222|gb|EEL04259.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           BDRD-ST196]
 gi|228665577|gb|EEL21057.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           Rock1-3]
 gi|228678368|gb|EEL32593.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           Rock3-28]
 gi|228684567|gb|EEL38509.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           Rock3-29]
 gi|228707085|gb|EEL59287.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           Rock4-18]
 gi|228717267|gb|EEL68942.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           AH603]
 gi|228747696|gb|EEL97568.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus
           mycoides DSM 2048]
          Length = 333

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 187/329 (56%), Positives = 242/329 (73%), Gaps = 1/329 (0%)

Query: 5   EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E LLS     EDAD+   LRP+TL ++ GQ +A  NL+VFIEAAK R E LDHVL  GPP
Sbjct: 3   ERLLSGESGYEDADLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLLYGPP 62

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT L+  DVLFIDEIHRL   +EE
Sbjct: 63  GLGKTTLANIIANEMGVNIRTTSGPAIERPGDLAAVLTALQPGDVLFIDEIHRLHRSIEE 122

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTR G L+ PL+DRFG+  RL +Y
Sbjct: 123 VLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSRLEYY 182

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            ++ L  IV+R A++  + +   AA EIA R+RGTPRIA RLLRRVRDFA+V    TI  
Sbjct: 183 TVDQLSAIVERTAEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRSDGTIAM 242

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           EI   AL  L +DK+G D +D + L  I   F GGPVG+ET+SA + E    IED+ EPY
Sbjct: 243 EITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSATIGEESHTIEDVYEPY 302

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++Q GF+QRTPRGR++ P+A++H G+++P
Sbjct: 303 LLQIGFLQRTPRGRIVTPLAYEHFGMEMP 331


>gi|28871122|ref|NP_793741.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213969186|ref|ZP_03397325.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv.
           tomato T1]
 gi|28854372|gb|AAO57436.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213926184|gb|EEB59740.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv.
           tomato T1]
          Length = 312

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 182/295 (61%), Positives = 230/295 (77%)

Query: 40  LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAAL 99
           +++FI+AA+ R+EALDH L  GPPGLGKTTLA ++A+E+GV+ +STSGPV+ + GDLAA+
Sbjct: 1   MELFIQAARGRSEALDHTLIFGPPGLGKTTLANIIAQEMGVSIKSTSGPVLERPGDLAAI 60

Query: 100 LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA 159
           LTNLE  DVLFIDEIHRLS IVEE+LYPAMEDFQLD+M+GEGP+ARS+K++L  FTL+ A
Sbjct: 61  LTNLEPNDVLFIDEIHRLSPIVEEVLYPAMEDFQLDIMIGEGPAARSIKLDLPPFTLVGA 120

Query: 160 TTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTP 219
           TTR G+LTNPL+DRFGI  RL FY I DL TIV R A + GL +    A EIA R+RGTP
Sbjct: 121 TTRAGMLTNPLRDRFGIVQRLEFYNIADLSTIVARSAGILGLVIEPAGAFEIARRARGTP 180

Query: 220 RIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGP 279
           RIA RLLRRVRDFA+V     ITR+ AD AL  L +D+ GFD  D R L  +   F GGP
Sbjct: 181 RIANRLLRRVRDFAQVRGNGQITRQTADKALNLLDVDEHGFDHQDRRLLLTMIEKFDGGP 240

Query: 280 VGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           VG+++++A +SE R  IED++EPY+IQQG+I RTPRGR++   A+ H G++IP R
Sbjct: 241 VGVDSLAAAISEERHTIEDVLEPYLIQQGYIMRTPRGRVVTRHAYLHFGLNIPTR 295


>gi|323142289|ref|ZP_08077121.1| Holliday junction DNA helicase RuvB [Phascolarctobacterium sp. YIT
           12067]
 gi|322413173|gb|EFY04060.1| Holliday junction DNA helicase RuvB [Phascolarctobacterium sp. YIT
           12067]
          Length = 335

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 183/312 (58%), Positives = 232/312 (74%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPR L E+ GQ +   NL +FI+AA AR EALDHVL  GPPGLGKTTLA ++A EL VN
Sbjct: 22  LRPRLLNEYIGQTQVKDNLSIFIKAAAARHEALDHVLLFGPPGLGKTTLANIIANELNVN 81

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGP I + GDLAA+LTNL D DVLFIDEIHRLS  VEEILY AMEDF LD+++G+G
Sbjct: 82  IRVTSGPAIERQGDLAAILTNLGDNDVLFIDEIHRLSKTVEEILYSAMEDFALDIIIGKG 141

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARSV+++L  FTLI ATTR+G +  PL+DRFG+   L FY+ E+L+ I+ R A++  +
Sbjct: 142 PAARSVRLDLPHFTLIGATTRLGAIAAPLRDRFGVQCCLEFYKPEELQFIITRAAEILNV 201

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  E A EIA RSRGTPRIA RLL+RVRDFA+V   + I R++AD AL +L +D+ GFD
Sbjct: 202 KIDKEGAMEIARRSRGTPRIANRLLKRVRDFAQVLGVEVIDRQLADEALAKLEVDRYGFD 261

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           + D + LT I + FGGGPVGIETI+A +SE    IED+IEPY++QQG + RT RGR+   
Sbjct: 262 RNDRKILTTIVKTFGGGPVGIETIAAAVSEESSTIEDVIEPYLMQQGMLNRTSRGRMATR 321

Query: 322 IAWQHLGIDIPH 333
             +++LGI  P 
Sbjct: 322 ETYRYLGIPFPE 333


>gi|262373116|ref|ZP_06066395.1| Holliday junction DNA helicase RuvB [Acinetobacter junii SH205]
 gi|262313141|gb|EEY94226.1| Holliday junction DNA helicase RuvB [Acinetobacter junii SH205]
          Length = 331

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 186/333 (55%), Positives = 242/333 (72%), Gaps = 2/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M DR  L+S     ED     +RP +L ++ GQ      +++FI AA+ R EALDH L  
Sbjct: 1   MQDR--LISGIEKPEDHFDRAIRPTSLADYIGQPVVREQMEIFIGAARGRGEALDHTLIF 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++ARE+G N +STSGPV+ +AGDLAA+LTNLE+ DVLFIDEIHRLS +
Sbjct: 59  GPPGLGKTTLANIIAREMGGNLKSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPV 118

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EEILYPAMED+QLD+M+GEGP+ARS+K++L  FTL+AATTR GLLT+PL+DRFGI  RL
Sbjct: 119 IEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRL 178

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY +EDL  IV R A L  + +T E + EIA R+RGTPRIA RLLRRVRD+A+V     
Sbjct: 179 EFYSVEDLTHIVTRSANLMDVPITREGSTEIARRARGTPRIANRLLRRVRDYAQVKGTGE 238

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +T+E+A  AL  L +DK G D LD RY++M+   F G P G+E ++A ++E    +ED+I
Sbjct: 239 VTQEMAQRALDMLNVDKAGLDTLDRRYISMLLERFEGRPTGVEALAAAMAEDSGTLEDVI 298

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY+IQQG++ RT RGR+   +A+   GI  P 
Sbjct: 299 EPYLIQQGYVMRTARGRIATNMAYLQFGITPPE 331


>gi|83590536|ref|YP_430545.1| Holliday junction DNA helicase RuvB [Moorella thermoacetica ATCC
           39073]
 gi|97190146|sp|Q2RHT7|RUVB_MOOTA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|83573450|gb|ABC20002.1| Holliday junction DNA helicase subunit RuvB [Moorella thermoacetica
           ATCC 39073]
          Length = 336

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 186/329 (56%), Positives = 242/329 (73%), Gaps = 1/329 (0%)

Query: 2   MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M  E L++ N+  ED ++ L LRPR L E+ GQ      L +FI+AA+ R EALDHVL  
Sbjct: 1   MATERLVAGNLHNEDQELELSLRPRCLAEYIGQEHVKETLGIFIQAARERGEALDHVLLY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A ELGV  R TSGP + +AGDLAA+LTNL+ RDVLFIDEIHRL   
Sbjct: 61  GPPGLGKTTLAGIIANELGVQLRVTSGPALERAGDLAAILTNLQPRDVLFIDEIHRLPRQ 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILYPAMEDF LD+++G+GP ARS++++L  FTL+ ATTR GLL++PL+DRFGI  RL
Sbjct: 121 VEEILYPAMEDFVLDIILGKGPGARSIRLDLPPFTLVGATTRAGLLSSPLRDRFGINSRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY++ +L+ I++R A +  +A+  E A EIA R+RGTPR+A RLL+RVRD+AE+     
Sbjct: 181 EFYQVAELEEIIRRAATILQVAIEPEGAREIARRARGTPRVANRLLKRVRDYAEIRAGGV 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           ITRE+A  AL  L +D  G D  D R L  + R F GGPVG+ET++A +SE  D IED+ 
Sbjct: 241 ITREVAREALELLQVDAAGLDSSDRRLLLTLIRKFNGGPVGLETLAAAISEEPDTIEDVY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           EP+++Q G++QRTPRGR+  P A+ HLGI
Sbjct: 301 EPFLLQMGYLQRTPRGRVATPGAYAHLGI 329


>gi|229163368|ref|ZP_04291320.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           R309803]
 gi|228620149|gb|EEK77023.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           R309803]
          Length = 333

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 186/329 (56%), Positives = 243/329 (73%), Gaps = 1/329 (0%)

Query: 5   EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E LLS   + ED D+   LRP+TL ++ GQ +A  NL+VFIEAAK R E LDHVL  GPP
Sbjct: 3   ERLLSGESAYEDVDLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLLYGPP 62

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT L+  DVLFIDEIHRL   +EE
Sbjct: 63  GLGKTTLANIIANEMGVNVRTTSGPAIERPGDLAAVLTALQPGDVLFIDEIHRLHRSIEE 122

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTR G L+ PL+DRFG+  RL +Y
Sbjct: 123 VLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSRLEYY 182

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            ++ L  IV+R A++  + +   AA EIA R+RGTPRIA RLLRRVRDFA+V    T+T 
Sbjct: 183 TVDQLSEIVERTAEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRGNGTVTM 242

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           EI   AL  L +DK+G D +D + L  I   F GGPVG+ET+SA + E    IED+ EPY
Sbjct: 243 EITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSATIGEESHTIEDVYEPY 302

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++Q GF+QRTPRGR++ P+A++H G+++P
Sbjct: 303 LLQIGFLQRTPRGRIVTPLAYEHFGMEMP 331


>gi|228954704|ref|ZP_04116727.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|228805031|gb|EEM51627.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
          Length = 333

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 187/329 (56%), Positives = 243/329 (73%), Gaps = 1/329 (0%)

Query: 5   EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E LLS   + EDAD+   LRP+TL ++ GQ +A  NL+VFIEAAK R E LDHVL  GPP
Sbjct: 3   ERLLSGESAYEDADLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLLYGPP 62

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT L+  DVLFIDEIHRL   +EE
Sbjct: 63  GLGKTTLANIIANEMGVNVRTTSGPAIERPGDLAAVLTALQPGDVLFIDEIHRLHRSIEE 122

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTR G L+ PL+DRFG+  RL +Y
Sbjct: 123 VLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSRLEYY 182

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            ++ L  IV+R A++  + +   AA EIA R+RGTPRIA RLLRRVRDFA+V    T+T 
Sbjct: 183 TVDQLSAIVERTAEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRGNGTVTM 242

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           EI   AL  L +DK+G D +D + L  I   F GGPVG+ET+SA + E    IED+ EPY
Sbjct: 243 EITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSATIGEESHTIEDVYEPY 302

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++Q GF+QRTPRGR++ P+A++H  ++IP
Sbjct: 303 LLQIGFLQRTPRGRIVTPLAYEHFEMEIP 331


>gi|291538855|emb|CBL11966.1| Holliday junction DNA helicase, RuvB subunit [Roseburia
           intestinalis XB6B4]
          Length = 330

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 175/324 (54%), Positives = 244/324 (75%), Gaps = 1/324 (0%)

Query: 7   LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           ++S  V +ED  I   LRP+TL+++ GQ +A  NLKV+IEAAK R EALDHVLF GPPGL
Sbjct: 5   VISTQVQEEDIKIEKSLRPQTLDDYIGQQKAKENLKVYIEAAKQRGEALDHVLFYGPPGL 64

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLA ++A E+G + + TSGP I K G++AA+L+NL++ DVLF+DEIHRL+  VEE+L
Sbjct: 65  GKTTLAGIIANEMGTHLKVTSGPAIGKPGEMAAILSNLQEGDVLFVDEIHRLNRQVEEVL 124

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           YPAMED+ +D+M+G+G +AR+++++L +FTL+ ATTR GLL+ PL+DRFG+   L FY +
Sbjct: 125 YPAMEDYVIDIMIGKGATARAIRLDLPKFTLVGATTRAGLLSAPLRDRFGVVHHLEFYTV 184

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           E+LKTI+   AK  G+ + +E A E+A RSRGTPR+A RLL+RVRDFAEV +   I++E+
Sbjct: 185 EELKTIILHSAKTLGVEIDEEGAFELARRSRGTPRLANRLLKRVRDFAEVKYDGKISKEV 244

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           A  AL  L +DKMG DQ D   L ++   F GGPVG++T++A + E    IED+ EPY++
Sbjct: 245 AAFALDLLEVDKMGLDQNDRNILKIMIEKFSGGPVGLDTLAAAIGEDSGTIEDVYEPYLV 304

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGI 329
           + GFI RTP+GR++   A+QH G+
Sbjct: 305 KNGFINRTPKGRVVTDFAYQHFGL 328


>gi|118594339|ref|ZP_01551686.1| Holliday junction DNA helicase RuvB [Methylophilales bacterium
           HTCC2181]
 gi|118440117|gb|EAV46744.1| Holliday junction DNA helicase RuvB [Methylophilales bacterium
           HTCC2181]
          Length = 336

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 181/308 (58%), Positives = 231/308 (75%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L+E+ GQ +    L++FI AAK R EALDHVL  GPPGLGKTTLA ++A+E+GVN
Sbjct: 24  LRPKDLQEYVGQEKTRDQLEIFIGAAKNREEALDHVLLFGPPGLGKTTLAHIIAKEMGVN 83

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGPV+ K GDLAA+L+NLE  DVLFIDEIHRLS ++EEILYPAMED++LD+M+GEG
Sbjct: 84  LRQTSGPVLEKTGDLAAILSNLEPNDVLFIDEIHRLSPVIEEILYPAMEDYRLDIMIGEG 143

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSARSVK+ L  FTLI ATTR G+LTNPL+DRFGI  RL FY   +L  IV+R A L  +
Sbjct: 144 PSARSVKLELPPFTLIGATTRAGMLTNPLRDRFGIVARLEFYNERELSKIVERSAGLLEV 203

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
           ++  + A EIA RSRGTPRI  RLLRRVRDFAEV     + + +AD AL  L +D +G D
Sbjct: 204 SIDQDGAKEIAKRSRGTPRIVNRLLRRVRDFAEVKAQGKVNKLVADQALKMLDVDVVGLD 263

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D   L  I   F GGPVG++ +++ + E ++ IED+IEPY+IQQG++ RTPRGR+   
Sbjct: 264 LMDRSLLEAIIIKFAGGPVGLDNLASAIGEEKETIEDVIEPYLIQQGYLMRTPRGRVATA 323

Query: 322 IAWQHLGI 329
           +A +HLG+
Sbjct: 324 MAHRHLGL 331


>gi|304312896|ref|YP_003812494.1| Holliday junction resolvasome helicase subunit [gamma
           proteobacterium HdN1]
 gi|301798629|emb|CBL46861.1| Holliday junction resolvasome helicase subunit [gamma
           proteobacterium HdN1]
          Length = 339

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 186/330 (56%), Positives = 239/330 (72%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           E L+S +  +ED     +RP  L ++TGQV     +++FI AA+ R EALDH L  GPPG
Sbjct: 2   ERLISPHDKKEDGQDRAIRPTRLADYTGQVSVREQMEIFIAAARGRQEALDHTLIFGPPG 61

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLA ++A E+G + +STSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VEEI
Sbjct: 62  LGKTTLANIIANEMGSSLKSTSGPVLERAGDLAALLTNLERGDVLFIDEIHRLSPVVEEI 121

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPAMED+QLD+M+GEGP+ARS+KI+L  FTL+ ATTR GLLT+PL+DRFGI  RL FY 
Sbjct: 122 LYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLVGATTRAGLLTSPLRDRFGIVQRLEFYN 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +E+L +IV R A + G+ +    A EIA RSRGTPRIA RLLRRVRD+ +V    TI+++
Sbjct: 182 VEELTSIVSRAAGILGVPIHSGGAIEIARRSRGTPRIANRLLRRVRDYCQVKGDGTISQQ 241

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
            +  AL  L +D  GFD +D R L  I   F GGPVGI+++ A +SE    +ED++EPY+
Sbjct: 242 QSARALDLLKVDAFGFDTMDRRLLLAIIEKFDGGPVGIDSLGAAISEESGTLEDVVEPYL 301

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           IQQGF+ RT RGR+    A+ H G+  P R
Sbjct: 302 IQQGFLLRTARGRIATRQAYLHFGLPAPRR 331


>gi|167037427|ref|YP_001665005.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|167040094|ref|YP_001663079.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter sp. X514]
 gi|256752589|ref|ZP_05493443.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|300914177|ref|ZP_07131493.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter sp. X561]
 gi|307724587|ref|YP_003904338.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter sp. X513]
 gi|320115840|ref|YP_004185999.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|238687547|sp|B0K0L8|RUVB_THEPX RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|238687653|sp|B0K956|RUVB_THEP3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|166854334|gb|ABY92743.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter sp. X514]
 gi|166856261|gb|ABY94669.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|256748527|gb|EEU61577.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|300889112|gb|EFK84258.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter sp. X561]
 gi|307581648|gb|ADN55047.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter sp. X513]
 gi|319928931|gb|ADV79616.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 338

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 179/323 (55%), Positives = 243/323 (75%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           E +L++N +QEDA    LRPR L E+ GQ +    LK++IEAAK R E LDHVL  GPPG
Sbjct: 3   ERILTQNFTQEDASEYSLRPRWLSEYIGQQKIKEELKIYIEAAKMRKEPLDHVLLYGPPG 62

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLA V++ E+GV  + TSGP I K+GDLAA+LTNL++ D+LFIDEIHRL+  VEEI
Sbjct: 63  LGKTTLATVISNEMGVGIKITSGPAIEKSGDLAAILTNLQENDILFIDEIHRLNRSVEEI 122

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPAMEDF+LD+++G+GPSARS++++L RFTLI ATTR  L+T+PL+DRFG+  RL++Y 
Sbjct: 123 LYPAMEDFELDIVIGKGPSARSIRLSLPRFTLIGATTRAALMTSPLRDRFGVINRLDYYS 182

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +E+LK I++R A +  + + ++AA EIA RSRGTPRIA RLL+RVRDFA+V     I  +
Sbjct: 183 VEELKEIIKRSANILNIGIDEKAALEIAKRSRGTPRIANRLLKRVRDFAQVRGNGYIDFK 242

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
            +  AL  L +D++G + +D + L  I   FGGGPVGI+ I+A + E  D IED+ EPY+
Sbjct: 243 TSKEALDVLGVDEIGLEYIDRKILVSIIEKFGGGPVGIDAIAASIGEDGDTIEDVYEPYL 302

Query: 305 IQQGFIQRTPRGRLLMPIAWQHL 327
           +Q GF+ RTPRGR++  +A+ +L
Sbjct: 303 LQIGFLNRTPRGRVVTKLAYDYL 325


>gi|291536275|emb|CBL09387.1| Holliday junction DNA helicase, RuvB subunit [Roseburia
           intestinalis M50/1]
          Length = 330

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 174/324 (53%), Positives = 244/324 (75%), Gaps = 1/324 (0%)

Query: 7   LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           ++S  V +ED  I   LRP+TL+++ GQ +A  NLKV+IEAAK R E+LDHVLF GPPGL
Sbjct: 5   VISTQVQEEDIKIEKSLRPQTLDDYIGQQKAKENLKVYIEAAKQRGESLDHVLFYGPPGL 64

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLA ++A E+G + + TSGP I K G++AA+L+NL++ DVLF+DEIHRL+  VEE+L
Sbjct: 65  GKTTLAGIIANEMGTHLKVTSGPAIGKPGEMAAILSNLQEGDVLFVDEIHRLNRQVEEVL 124

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           YPAMED+ +D+M+G+G +AR+++++L +FTL+ ATTR GLL+ PL+DRFG+   L FY +
Sbjct: 125 YPAMEDYVIDIMIGKGATARAIRLDLPKFTLVGATTRAGLLSAPLRDRFGVVHHLEFYTV 184

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           E+LKTI+   AK  G+ + +E A E+A RSRGTPR+A RLL+RVRDFAEV +   I++E+
Sbjct: 185 EELKTIILHSAKTLGVEIDEEGAFELARRSRGTPRLANRLLKRVRDFAEVKYDGKISKEV 244

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           A  AL  L +DKMG DQ D   L ++   F GGPVG++T++A + E    IED+ EPY++
Sbjct: 245 AAFALDLLEVDKMGLDQNDRNILKIMIEKFSGGPVGLDTLAAAIGEDSGTIEDVYEPYLV 304

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGI 329
           + GFI RTP+GR++   A+QH G+
Sbjct: 305 KNGFINRTPKGRMVTDFAYQHFGL 328


>gi|87118956|ref|ZP_01074854.1| Holliday junction DNA helicase RuvB [Marinomonas sp. MED121]
 gi|86165347|gb|EAQ66614.1| Holliday junction DNA helicase RuvB [Marinomonas sp. MED121]
          Length = 342

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 179/312 (57%), Positives = 231/312 (74%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L+E+ GQ      + +FI+AA+ R E LDH L  GPPGLGKTTLA ++A E+GV 
Sbjct: 28  IRPKMLDEYVGQPVVREQMDIFIQAARQREEPLDHCLIFGPPGLGKTTLANIIANEMGVE 87

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            ++TSGPV+ +AGDLAALLTNL + DVLFIDEIHRLS  +EE+LYPAMED+QLD+M+GEG
Sbjct: 88  IKTTSGPVLERAGDLAALLTNLSEGDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEG 147

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+KI L  FTL+ ATTR GLLT+PL+DRFGI  RL FY++E L TIV R A+  GL
Sbjct: 148 PAARSIKIELPAFTLVGATTRAGLLTSPLRDRFGIVQRLEFYDVESLTTIVSRSAQKMGL 207

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +    + EIA R+RGTPRIA RLLRRVRD A+V   + + +E+A  AL  L++D  GFD
Sbjct: 208 NMDPSGSFEIARRARGTPRIANRLLRRVRDVAQVGGHEIVVQEVAQRALDMLSVDTQGFD 267

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            LD R L  +   F G PVGI++ISA + E +D IED+IEPY+IQQGF+ RTPRGR +  
Sbjct: 268 HLDRRMLLTMIEKFDGRPVGIDSISAAVGEDKDTIEDVIEPYLIQQGFVMRTPRGRQVTK 327

Query: 322 IAWQHLGIDIPH 333
            A++H    +P+
Sbjct: 328 KAYEHFNYQLPN 339


>gi|88802111|ref|ZP_01117639.1| Holliday junction DNA helicase RuvB [Polaribacter irgensii 23-P]
 gi|88782769|gb|EAR13946.1| Holliday junction DNA helicase RuvB [Polaribacter irgensii 23-P]
          Length = 340

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 185/321 (57%), Positives = 239/321 (74%), Gaps = 1/321 (0%)

Query: 9   SRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           + N+S ED D+   LRP + ++FTGQ +A  NLK+F+EAA  R EALDH LF GPPGLGK
Sbjct: 9   NSNLSNEDLDVEKKLRPLSFDDFTGQDQAIDNLKIFVEAANQRNEALDHTLFHGPPGLGK 68

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127
           TTLA ++A EL V  + TSGPV+ K GDLA LLTNLE+RDVLFIDEIHRLS IVEE LY 
Sbjct: 69  TTLAHILANELQVGIKVTSGPVLDKPGDLAGLLTNLEERDVLFIDEIHRLSPIVEEYLYS 128

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           AMED+++D+M+  GP+AR+V+INL  FTLI ATTR GLLT P++ RFGI  RL++Y+ + 
Sbjct: 129 AMEDYKIDIMIESGPNARTVQINLEPFTLIGATTRSGLLTAPMRARFGISSRLHYYKTDL 188

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           L TI+QR A++  + ++ E+A EIA RSRGTPRIA  LLRRVRDFA++    TI+ EIA 
Sbjct: 189 LTTIIQRSAQILNVPISMESAIEIAGRSRGTPRIANALLRRVRDFAQIKGNGTISIEIAK 248

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
            AL  L +D  G D++D + L  I   F GGPVG+ TI+  +SE  + IE++ EP++IQQ
Sbjct: 249 YALKALNVDAHGLDEMDNKILVTIIDKFKGGPVGLSTIATAVSENTETIEEVYEPFLIQQ 308

Query: 308 GFIQRTPRGRLLMPIAWQHLG 328
           GFI RTPRGR +  +A++HLG
Sbjct: 309 GFIMRTPRGREVTELAYKHLG 329


>gi|294651066|ref|ZP_06728404.1| crossover junction crossover junction ATP-dependent DNA helicase
           RuvB [Acinetobacter haemolyticus ATCC 19194]
 gi|292823045|gb|EFF81910.1| crossover junction crossover junction ATP-dependent DNA helicase
           RuvB [Acinetobacter haemolyticus ATCC 19194]
          Length = 332

 Score =  372 bits (956), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 185/333 (55%), Positives = 242/333 (72%), Gaps = 2/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M DR  L+S     ED     +RP +L ++ GQ      +++FI AA+ R EALDH L  
Sbjct: 1   MQDR--LISGTEKPEDHFDRAIRPTSLADYIGQPVVREQMEIFIGAARGRGEALDHTLIF 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++ARE+G N +STSGPV+ +AGDLAA+LTNLE+ DVLFIDEIHRLS +
Sbjct: 59  GPPGLGKTTLANIIAREMGGNLKSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPV 118

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EEILYPAMED+QLD+M+GEGP+ARS+K++L  FTL+AATTR GLLT+PL+DRFGI  RL
Sbjct: 119 IEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRL 178

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY +EDL  IV R A L  + +T E + EIA R+RGTPRIA RLLRRVRD+A+V     
Sbjct: 179 EFYSVEDLTHIVTRSANLMDVPLTKEGSTEIARRARGTPRIANRLLRRVRDYAQVKGTGE 238

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +T+++A  AL  L +DK G D LD RYL+M+   F G P G+E ++A ++E    +ED+I
Sbjct: 239 VTQDMAQRALDMLNVDKDGLDTLDRRYLSMLLERFEGRPTGVEALAAAMAEDSGTLEDVI 298

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY+IQQG++ RT RGR+   +A+   G+  P 
Sbjct: 299 EPYLIQQGYVMRTARGRIATNMAYLQFGLTPPE 331


>gi|85059240|ref|YP_454942.1| Holliday junction DNA helicase B [Sodalis glossinidius str.
           'morsitans']
 gi|97190324|sp|Q2NTI8|RUVB_SODGM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|84779760|dbj|BAE74537.1| holliday junction DNA helicase RuvB [Sodalis glossinidius str.
           'morsitans']
          Length = 338

 Score =  372 bits (956), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 185/319 (57%), Positives = 238/319 (74%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           V+ E+     +RP+ LE++ GQ      +++FI+AAK R +ALDH+L  GPPGLGKTTLA
Sbjct: 13  VTGEEVIDRAIRPKKLEDYIGQPHVLEQMEIFIQAAKMRGDALDHLLISGPPGLGKTTLA 72

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            +VA E+GVN R+TSGPV+ KAGDLAA+LT+LE  DVLFIDEIHRLS +VEE+LYPAMED
Sbjct: 73  NIVANEMGVNLRTTSGPVLEKAGDLAAMLTSLEPHDVLFIDEIHRLSPVVEEVLYPAMED 132

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           +QLD+M+GEGP+ RS+KI L  FTL+ ATTR G LT PL+DRFGI  RL FY+  DL+ I
Sbjct: 133 YQLDIMIGEGPAGRSIKIELPPFTLVGATTRAGSLTPPLRDRFGIVQRLEFYQTGDLQHI 192

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           V R A    L +T+  A EIA R+RGTPRIA RLLRRVRDFAEV  A  IT ++A +AL 
Sbjct: 193 VSRSAVCLALNITEGGAREIARRARGTPRIANRLLRRVRDFAEVRAAGHITDDVAVSALN 252

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L +D  GFD +D + L  I   F GGPVG++ ++A + E R+ IED++EP++IQQGFIQ
Sbjct: 253 MLNVDTEGFDFMDRKLLLAIIDKFVGGPVGLDNLAAAIGEERETIEDVLEPFLIQQGFIQ 312

Query: 312 RTPRGRLLMPIAWQHLGID 330
           RTPRGR+    A++H G++
Sbjct: 313 RTPRGRIATVHAYRHFGLE 331


>gi|88811436|ref|ZP_01126691.1| Holliday junction DNA helicase RuvB [Nitrococcus mobilis Nb-231]
 gi|88791325|gb|EAR22437.1| Holliday junction DNA helicase RuvB [Nitrococcus mobilis Nb-231]
          Length = 347

 Score =  372 bits (956), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 190/335 (56%), Positives = 239/335 (71%), Gaps = 1/335 (0%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + ++    + ED  I   +RPR L ++ GQ      L++F+ AA+ R E LDHVL 
Sbjct: 1   MIEPDRVVQEQAAGEDEAIDRAIRPRRLADYVGQPTVREQLEIFVHAARQRGEPLDHVLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA ELGV  R TSGPV+ K GDLAALLTNLE +DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLAHIVAHELGVGLRQTSGPVLDKPGDLAALLTNLEPQDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           ++EE+LYPAMEDF++D+++GEGP+ARS+K++L  FTL+ ATTR GLLT+PL+DRFGI  R
Sbjct: 121 VIEEVLYPAMEDFKIDILIGEGPAARSIKLDLPPFTLVGATTRAGLLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y +EDL  IVQR A L  LA+    A EIA RSRGTPRIA RLLRRVRDFAEV    
Sbjct: 181 LEYYCVEDLAAIVQRSATLLALAIDARGALEIAQRSRGTPRIANRLLRRVRDFAEVKADG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT E+A AA+  L +D  GFD  D R L  I   F GGPVG+++++A + + R  IED+
Sbjct: 241 RITMEVAKAAMDLLNVDGNGFDVQDRRLLLTIIEKFDGGPVGVDSLAAAIGDERGTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           +EPY+IQQGFI RT RGR+    A+ H G   P R
Sbjct: 301 LEPYLIQQGFIMRTARGRMATRSAYLHFGYPPPAR 335


>gi|78485239|ref|YP_391164.1| Holliday junction DNA helicase B [Thiomicrospira crunogena XCL-2]
 gi|97190410|sp|Q31H83|RUVB_THICR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|78363525|gb|ABB41490.1| Holliday junction DNA helicase RuvB [Thiomicrospira crunogena
           XCL-2]
          Length = 340

 Score =  372 bits (955), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 183/313 (58%), Positives = 235/313 (75%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ + ++ GQ      L++ I AAK R E LDHVL  GPPGLGKTTL+ ++A+E+GV 
Sbjct: 23  VRPQIITDYIGQQAVREQLQLSINAAKMRQEHLDHVLLYGPPGLGKTTLSNIIAQEMGVT 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGPVI K GDLAA+LT LE  DVLF+DEIHRLS IVEE+LYPAMEDFQ+D+++GEG
Sbjct: 83  LRQTSGPVIEKPGDLAAILTRLEPHDVLFVDEIHRLSPIVEEVLYPAMEDFQIDIIIGEG 142

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+A+SVKI++  FTL+ ATTR GLLT+PL+DRFGI  RL FY IE+L  IV R A + GL
Sbjct: 143 PAAQSVKIDIPPFTLVGATTRAGLLTSPLRDRFGIVQRLEFYSIEELAQIVTRSANILGL 202

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
           +   + A EIA RSRGTPRIA RLLRRVRD+A+V     IT EIAD AL  L +D +G D
Sbjct: 203 SAEPDGALEIARRSRGTPRIANRLLRRVRDYAQVKGNGVITAEIADLALNLLEVDPLGLD 262

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           ++D R L ++ + F   PVGI++ISA L E R  IED+IEP+++QQGF+ RTPRGR++  
Sbjct: 263 KMDRRLLELLIQKFESRPVGIDSISAALGEERGTIEDVIEPFLVQQGFLIRTPRGRVVTQ 322

Query: 322 IAWQHLGIDIPHR 334
            A++HLG+ +P R
Sbjct: 323 TAYRHLGLTMPER 335


>gi|254448678|ref|ZP_05062136.1| Holliday junction DNA helicase RuvB [gamma proteobacterium
           HTCC5015]
 gi|198261686|gb|EDY85973.1| Holliday junction DNA helicase RuvB [gamma proteobacterium
           HTCC5015]
          Length = 353

 Score =  372 bits (955), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 180/319 (56%), Positives = 235/319 (73%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           +EDA    +RP  L ++ GQ +    +++FI AA+ R EALDHVL  GPPGLGKTTL+ +
Sbjct: 17  REDAVDRAIRPVRLADYMGQPKVHEQMEIFISAARQRREALDHVLIFGPPGLGKTTLSNI 76

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +A E+GV+ R TSGPV+ + GDLAA+LTNLE+ DVLFIDEIHRLS +VEE+LYPAMEDFQ
Sbjct: 77  IAHEMGVSIRHTSGPVLERPGDLAAILTNLEENDVLFIDEIHRLSAVVEEVLYPAMEDFQ 136

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           LD+MVGEGP+ARS+K++L  FTL+ ATTR GLLT+PL+DRFGI  RL+FY+I+ L  IVQ
Sbjct: 137 LDIMVGEGPAARSIKLDLPPFTLVGATTRAGLLTSPLRDRFGITQRLSFYDIDTLTKIVQ 196

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A +  + + +  A E+A RSRGTPRIA RLLRRVRDFAEV HA  +T   A  AL  L
Sbjct: 197 RSAHILNVDMQEAGAREVARRSRGTPRIANRLLRRVRDFAEVRHAGKVTETAAREALDML 256

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D +G D +D   +  I   F GGPVG++ ++A + E R  +ED++EPY+IQ+G + RT
Sbjct: 257 DVDSLGLDNMDRLLIQTIIDKFSGGPVGLDNLAAAIGEERGTLEDVVEPYLIQEGLLMRT 316

Query: 314 PRGRLLMPIAWQHLGIDIP 332
           PRGR+    A+QH G+  P
Sbjct: 317 PRGRVATASAYQHFGLKAP 335


>gi|68171607|ref|ZP_00544977.1| Holliday junction DNA helicase RuvB [Ehrlichia chaffeensis str.
           Sapulpa]
 gi|88657636|ref|YP_507140.1| Holliday junction DNA helicase B [Ehrlichia chaffeensis str.
           Arkansas]
 gi|123763771|sp|Q2GHE3|RUVB_EHRCR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|67998974|gb|EAM85655.1| Holliday junction DNA helicase RuvB [Ehrlichia chaffeensis str.
           Sapulpa]
 gi|88599093|gb|ABD44562.1| holliday junction DNA helicase RuvB [Ehrlichia chaffeensis str.
           Arkansas]
          Length = 329

 Score =  372 bits (955), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 184/324 (56%), Positives = 238/324 (73%), Gaps = 3/324 (0%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           + +L      ED     +RP  L++F GQ    +NLK+FI AA  R E +DHVL  GPPG
Sbjct: 2   KNILQSTECLEDQQNVSMRPNLLDDFIGQSSVVNNLKIFINAAYTRKEPMDHVLLYGPPG 61

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLA ++A+EL VNFRST+GP+++KAGDLAA+LTNL+ +D+LFIDEIHRL+  +EEI
Sbjct: 62  LGKTTLAHIIAKELKVNFRSTAGPLLSKAGDLAAILTNLQAKDILFIDEIHRLNRNIEEI 121

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LY AMEDF LD++VGEG  AR+++++L  FTL+ ATTR+GLL+NPL+DRFGIPI L FY 
Sbjct: 122 LYSAMEDFCLDIIVGEGCGARTLRVDLPPFTLVGATTRIGLLSNPLRDRFGIPIHLEFYS 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA-HAKTITR 243
            E+L  ++QR AK+    +++  A EI++RSRGTPRIA RLLRR+RDF EV  H K IT 
Sbjct: 182 TEELTKVIQRAAKVIKTNISNSGAQEISLRSRGTPRIALRLLRRIRDFMEVTEHNKIITD 241

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
             AD ALLRL IDK+G D+ D++YL  I  +    P GI+TIS+GLSE    IE+ IEPY
Sbjct: 242 TFADKALLRLGIDKLGLDRQDIQYLKFIYDS--NNPTGIDTISSGLSEDTGNIEETIEPY 299

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHL 327
           +I+  FIQRTPRGR++   A  HL
Sbjct: 300 LIKINFIQRTPRGRVITEKAISHL 323


>gi|240144038|ref|ZP_04742639.1| holliday junction DNA helicase RuvB [Roseburia intestinalis L1-82]
 gi|257203964|gb|EEV02249.1| holliday junction DNA helicase RuvB [Roseburia intestinalis L1-82]
          Length = 330

 Score =  372 bits (954), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 174/324 (53%), Positives = 244/324 (75%), Gaps = 1/324 (0%)

Query: 7   LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           ++S  V +ED  I   LRP+TL+++ GQ +A  NLKV+IEAAK R EALDHVLF GPPGL
Sbjct: 5   VISTQVQEEDIKIEKSLRPQTLDDYIGQQKAKENLKVYIEAAKQRGEALDHVLFYGPPGL 64

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLA ++A E+G + + TSGP I K G++AA+L+NL++ DVLF+DEIHRL+  VEE+L
Sbjct: 65  GKTTLAGIIANEMGTHLKVTSGPAIGKPGEMAAILSNLQEGDVLFVDEIHRLNRQVEEVL 124

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           YPAMED+ +D+M+G+G +AR+++++L +FTL+ ATTR GLL+ PL+DRFG+   L FY +
Sbjct: 125 YPAMEDYVIDIMIGKGATARAIRLDLPKFTLVGATTRAGLLSAPLRDRFGVVHHLEFYTV 184

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           E+LKTI+   AK  G+ + ++ A E+A RSRGTPR+A RLL+RVRDFAEV +   I++E+
Sbjct: 185 EELKTIILHSAKTLGVEIDEKGAFELARRSRGTPRLANRLLKRVRDFAEVKYDGKISKEV 244

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           A  AL  L +DKMG DQ D   L ++   F GGPVG++T++A + E    IED+ EPY++
Sbjct: 245 AAFALDLLEVDKMGLDQNDRNILKIMIEKFSGGPVGLDTLAAAIGEDSGTIEDVYEPYLV 304

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGI 329
           + GFI RTP+GR++   A+QH G+
Sbjct: 305 KNGFINRTPKGRVVTDFAYQHFGL 328


>gi|307266569|ref|ZP_07548101.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306918423|gb|EFN48665.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 338

 Score =  372 bits (954), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 179/323 (55%), Positives = 243/323 (75%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           E +L+++ +QEDA    LRPR L E+ GQ +    LK++IEAAK R E LDHVL  GPPG
Sbjct: 3   ERILTQSFTQEDASEYSLRPRWLSEYIGQQKIKEELKIYIEAAKMRKEPLDHVLLYGPPG 62

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLA V++ E+GV  + TSGP I K+GDLAA+LTNL++ D+LFIDEIHRL+  VEEI
Sbjct: 63  LGKTTLATVISNEMGVGIKITSGPAIEKSGDLAAILTNLQENDILFIDEIHRLNRSVEEI 122

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPAMEDF+LD+++G+GPSARS++++L RFTLI ATTR  L+T+PL+DRFG+  RL++Y 
Sbjct: 123 LYPAMEDFELDIVIGKGPSARSIRLSLPRFTLIGATTRAALMTSPLRDRFGVINRLDYYS 182

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +E+LK I++R A +  + + ++AA EIA RSRGTPRIA RLL+RVRDFA+V     I  +
Sbjct: 183 VEELKEIIKRSANILNIGIDEDAAFEIAERSRGTPRIANRLLKRVRDFAQVRGNGYIDFK 242

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
            +  AL  L +D+MG + +D + L  I   FGGGPVGI+ I+A + E  D IED+ EPY+
Sbjct: 243 TSKEALDVLGVDEMGLEYIDRKILVSIIEKFGGGPVGIDAIAASIGEDGDTIEDVYEPYL 302

Query: 305 IQQGFIQRTPRGRLLMPIAWQHL 327
           +Q GF+ RTPRGR++  +A+ +L
Sbjct: 303 LQIGFLNRTPRGRVVTKLAYDYL 325


>gi|291533855|emb|CBL06968.1| Holliday junction DNA helicase, RuvB subunit [Megamonas hypermegale
           ART12/1]
          Length = 334

 Score =  372 bits (954), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 178/308 (57%), Positives = 232/308 (75%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L+E+ GQ +   NL +FI+AA  R EALDHVL  GPPGLGKTTLA ++A E+GVN
Sbjct: 23  LRPKKLQEYIGQDKVKDNLSIFIQAALNRNEALDHVLLYGPPGLGKTTLANIIANEMGVN 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           FR TSGP I ++GDLAALLTNL ++DVLFIDEIHRLS  VEE+LY AMEDF LD+++G+G
Sbjct: 83  FRVTSGPAIERSGDLAALLTNLTEKDVLFIDEIHRLSHSVEEVLYSAMEDFALDIIIGKG 142

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSARS++++++ FTLI ATT+ G L +PL+DRFG+  RL +Y  E L  I++R A++  +
Sbjct: 143 PSARSIRLDIAPFTLIGATTKAGALASPLRDRFGVISRLEYYTPESLVFIIKRSAEILNI 202

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + D  A EIA RSRGTPR+A RLL+RVRDFA++     IT EIAD AL  L IDKMG D
Sbjct: 203 PIEDRGALEIARRSRGTPRVANRLLKRVRDFAQIKGDGIITDEIADTALAMLEIDKMGLD 262

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D   L  +   FGGGPVG+ET++A +SE  D I D+ EPY++Q GFI RTPRGR++  
Sbjct: 263 HIDRNILLTMINKFGGGPVGLETLAAAVSEETDTIGDVYEPYLLQLGFINRTPRGRVVTK 322

Query: 322 IAWQHLGI 329
           + ++HLG+
Sbjct: 323 LGYEHLGL 330


>gi|262278157|ref|ZP_06055942.1| Holliday junction resolvasome protein [Acinetobacter calcoaceticus
           RUH2202]
 gi|262258508|gb|EEY77241.1| Holliday junction resolvasome protein [Acinetobacter calcoaceticus
           RUH2202]
          Length = 334

 Score =  371 bits (953), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 183/333 (54%), Positives = 241/333 (72%), Gaps = 2/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M DR  L+S     ED     +RP +L ++ GQ      +++FI AA+ R EALDH L  
Sbjct: 1   MQDR--LISGAEKPEDHFDRAIRPTSLADYIGQPVVREQMEIFIGAARGRGEALDHTLIF 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++ARE+G N +STSGPV+ +AGDLAA+LTNLE+ DVLFIDEIHRLS +
Sbjct: 59  GPPGLGKTTLANIIAREMGGNLKSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPV 118

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EEILYPAMED+QLD+M+GEGP+ARS+K++L  FTL+AATTR GLLT+PL+DRFGI  RL
Sbjct: 119 IEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRL 178

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY +EDL  IV R A L  + +T E + E+A R+RGTPRIA RLLRRVRD+A+V     
Sbjct: 179 EFYSVEDLTHIVSRSANLMNVPITVEGSEEVARRARGTPRIANRLLRRVRDYAQVKGTGE 238

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +T ++A  AL  L +DK G D LD RYL+M+   F GGP G+E ++A ++E    +ED++
Sbjct: 239 VTHDMAQRALDMLNVDKAGLDTLDRRYLSMLLERFDGGPAGVEALAAAMAEDSGTLEDVL 298

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY+IQQG++ RT RGR+    ++   G+  P 
Sbjct: 299 EPYLIQQGYVMRTARGRIATNQSYLQFGLTPPE 331


>gi|124265520|ref|YP_001019524.1| Holliday junction DNA helicase RuvB [Methylibium petroleiphilum
           PM1]
 gi|171769833|sp|A2SCK0|RUVB_METPP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|124258295|gb|ABM93289.1| putative holliday junction DNA helicase protein [Methylibium
           petroleiphilum PM1]
          Length = 355

 Score =  371 bits (953), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 184/319 (57%), Positives = 231/319 (72%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
            E+A    LRP+ L ++ GQ +A   L++FI AA+ R+EALDHVL  GPPGLGKTTL+ +
Sbjct: 27  NEEAIERALRPKGLADYVGQAKAREQLEIFIGAARKRSEALDHVLLFGPPGLGKTTLSHI 86

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +A ELGVN R TSGPV+ K  DLAA+LTNLE  DVLFIDEIHRLS +VEEILYPA+ED+Q
Sbjct: 87  IAAELGVNLRQTSGPVLEKPKDLAAILTNLERNDVLFIDEIHRLSPVVEEILYPALEDYQ 146

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           +D+M+GEGP+ARS+K+ L  FTLI ATTR G+LTNPL+DRFGI  RL FY +E+L  IV 
Sbjct: 147 IDIMIGEGPAARSIKLELQPFTLIGATTRAGMLTNPLRDRFGIVARLEFYSVEELARIVT 206

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A L  +        EIA RSRGTPRIA RLLRRVRD+A+V     I   IAD AL  L
Sbjct: 207 RSAGLLQVPTDTAGGLEIAKRSRGTPRIANRLLRRVRDYAQVKGDGRIDAAIADKALAML 266

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D  GFD +D + L  +   F GGPVG++ ++A + E    IED+IEPY+IQQG++QRT
Sbjct: 267 DVDPQGFDVMDRKLLEAVIHRFDGGPVGLDNVAAAIGEESGTIEDVIEPYLIQQGYLQRT 326

Query: 314 PRGRLLMPIAWQHLGIDIP 332
           PRGR+    A++HLG+  P
Sbjct: 327 PRGRIATAAAYRHLGVLPP 345


>gi|322382935|ref|ZP_08056767.1| Holliday junction DNA helicase RuvB-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321153055|gb|EFX45513.1| Holliday junction DNA helicase RuvB-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 334

 Score =  371 bits (953), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 187/334 (55%), Positives = 246/334 (73%), Gaps = 3/334 (0%)

Query: 1   MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M DR  ++S N+  ED  + L LRPR L E+ GQ +A  N+KV+IEAAK R EALDHVL 
Sbjct: 1   MDDR--IISANLMMEDQQMELSLRPRYLAEYIGQTQAKENMKVYIEAAKMRQEALDHVLL 58

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTL+ ++A ELGVN R+TSGP I + GDLAA+LTNL++ DVLFIDEIHRL  
Sbjct: 59  YGPPGLGKTTLSTIIANELGVNIRTTSGPAIERPGDLAAILTNLQENDVLFIDEIHRLHR 118

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEE+LYPAMEDF LD+++G+GPSARSV+++L  FTLI ATTR+GLL+ PL+DRFG+  R
Sbjct: 119 TVEEVLYPAMEDFALDIIIGKGPSARSVRLDLPPFTLIGATTRIGLLSAPLRDRFGVVSR 178

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y +++L  IV R A +  + +  EAA EI  R+RGTPRIA RLL+RVRDFA+V    
Sbjct: 179 LEYYTVDELAFIVTRAADILNVQIVGEAAQEIGRRARGTPRIANRLLKRVRDFAQVRGDG 238

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I+ +IA AAL  + +D +G D++D + L  I  +F GGPVG++TI+A + E    IE++
Sbjct: 239 IISLDIAKAALKLIQVDDLGLDEIDHKMLRAIILSFRGGPVGLDTIAATIGEESQTIEEV 298

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            EPY++Q GF+QRTPRGR+    A+ HLG+  P 
Sbjct: 299 YEPYLLQIGFLQRTPRGRMATLQAYDHLGLPRPE 332


>gi|254468426|ref|ZP_05081832.1| Holliday junction DNA helicase RuvB [beta proteobacterium KB13]
 gi|207087236|gb|EDZ64519.1| Holliday junction DNA helicase RuvB [beta proteobacterium KB13]
          Length = 342

 Score =  371 bits (953), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 181/310 (58%), Positives = 230/310 (74%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP  L+E+ GQ +    L++FI+AA+ R EALDHVL  GPPGLGKTTL+ ++ARE+ V 
Sbjct: 23  LRPADLDEYVGQEKIRDQLEIFIKAAQQRGEALDHVLLFGPPGLGKTTLSHIIAREMNVG 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGPV+ KAGDLAALLTNLE  DVLFIDEIHRLS I+EEILYPAMED  LD+M+G+G
Sbjct: 83  LKQTSGPVLEKAGDLAALLTNLEPNDVLFIDEIHRLSPIIEEILYPAMEDNHLDIMIGDG 142

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  ++L  IV+R AKL  +
Sbjct: 143 PSARSVKLDLPPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYSQDELIRIVKRSAKLLDI 202

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + D  A EIA RSRGTPRIA RLLRRVRD+A V     +  + ADAAL  L +DK+G D
Sbjct: 203 FIDDSGAAEIAKRSRGTPRIANRLLRRVRDYASVKADGNVNDKTADAALKMLDVDKIGLD 262

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D   L  I   F GGPVG++ ++A + E ++ IED+IEPY+IQQG++ RTP+GR+   
Sbjct: 263 NMDRALLLAIIEKFKGGPVGLDNLAAAIGEEKETIEDVIEPYLIQQGYLMRTPKGRIATD 322

Query: 322 IAWQHLGIDI 331
           ++ +H  I I
Sbjct: 323 LSLKHFNIPI 332


>gi|167745588|ref|ZP_02417715.1| hypothetical protein ANACAC_00279 [Anaerostipes caccae DSM 14662]
 gi|317472816|ref|ZP_07932127.1| Holliday junction DNA helicase RuvB [Anaerostipes sp. 3_2_56FAA]
 gi|167654900|gb|EDR99029.1| hypothetical protein ANACAC_00279 [Anaerostipes caccae DSM 14662]
 gi|316899735|gb|EFV21738.1| Holliday junction DNA helicase RuvB [Anaerostipes sp. 3_2_56FAA]
          Length = 332

 Score =  371 bits (952), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 183/333 (54%), Positives = 247/333 (74%), Gaps = 3/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M+DR  ++S  + +ED  I + LRP+ L+++ GQ +   NL++FIEAAK+R E+LDHVL 
Sbjct: 1   MLDR--MISTELVEEDITIENNLRPQNLDDYIGQEKVKQNLRIFIEAAKSRGESLDHVLL 58

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+ V+ + TSGP I K G++AALL NL++ DVLFIDEIHRL+ 
Sbjct: 59  YGPPGLGKTTLAGIVANEMEVHLKVTSGPAIEKPGEIAALLNNLQEGDVLFIDEIHRLNR 118

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEE+LYPAMEDF +D++VG+G +ARS+++ L +FTL+ ATTR G+LT PL+DRFG+  R
Sbjct: 119 QVEEVLYPAMEDFAIDILVGKGQAARSIRLELPKFTLVGATTRAGMLTAPLRDRFGVVNR 178

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           LNFYE E+L TIV   A + G+ + +E A EIA RSRGTPR+A RLL+RVRDFAEV +  
Sbjct: 179 LNFYETEELMTIVINSAAVLGIPIEEEGAREIARRSRGTPRLANRLLKRVRDFAEVKYDG 238

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT+E+A +AL  L +D +G DQ+D   L  +   F G PVG++T++A + E    IED+
Sbjct: 239 VITKEVAMSALNHLEVDTLGLDQIDRTLLKTMIEVFHGSPVGLDTLAAAVGEDSGTIEDV 298

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
            EPY+IQ G IQRTPRGR++   A+QH G+ IP
Sbjct: 299 YEPYLIQNGLIQRTPRGRIVTGAAYQHFGLPIP 331


>gi|52081252|ref|YP_080043.1| Holliday junction DNA helicase RuvB [Bacillus licheniformis ATCC
           14580]
 gi|52786632|ref|YP_092461.1| Holliday junction DNA helicase RuvB [Bacillus licheniformis ATCC
           14580]
 gi|319644781|ref|ZP_07999014.1| Holliday junction DNA helicase ruvB [Bacillus sp. BT1B_CT2]
 gi|59800222|sp|Q65GP6|RUVB_BACLD RecName: Full=Holliday junction DNA helicase ruvB
 gi|52004463|gb|AAU24405.1| Holliday junction DNA helicase [Bacillus licheniformis ATCC 14580]
 gi|52349134|gb|AAU41768.1| RuvB [Bacillus licheniformis ATCC 14580]
 gi|317392590|gb|EFV73384.1| Holliday junction DNA helicase ruvB [Bacillus sp. BT1B_CT2]
          Length = 334

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 189/333 (56%), Positives = 240/333 (72%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD   + S   + E A    LRP+ L ++ GQ +   NLKVFIEAAK R E LDHVL  G
Sbjct: 1   MDERLVSSELDNHESAIEQSLRPQRLAQYIGQEKVKDNLKVFIEAAKMREETLDHVLLYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT LE  DVLFIDEIHRL   +
Sbjct: 61  PPGLGKTTLAAIIANEMGVNLRTTSGPAIERPGDLAAILTALEPGDVLFIDEIHRLHRSI 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTRVGLLT PL+DRFG+  RL 
Sbjct: 121 EEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRVGLLTAPLRDRFGVLSRLE 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y  ++L  IV R A+L  + +   +A EIA RSRGTPRIA RLLRRVRDFA+V    +I
Sbjct: 181 YYTRDELSEIVIRTAELFEVDIDSLSALEIARRSRGTPRIANRLLRRVRDFAQVLGNSSI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T E+A  AL RL +DK+G D +D + L  +   FGGGPVGI+TISA + E    IED+ E
Sbjct: 241 TEEVAVDALERLQVDKLGLDHIDRKLLMGMIEKFGGGPVGIDTISATIGEESHTIEDVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           PY++Q GFIQRTPRGR++ P  + H  +++P+ 
Sbjct: 301 PYLLQIGFIQRTPRGRIVTPDVYSHFKMEVPNH 333


>gi|167770543|ref|ZP_02442596.1| hypothetical protein ANACOL_01889 [Anaerotruncus colihominis DSM
           17241]
 gi|167667138|gb|EDS11268.1| hypothetical protein ANACOL_01889 [Anaerotruncus colihominis DSM
           17241]
          Length = 346

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 183/318 (57%), Positives = 234/318 (73%), Gaps = 1/318 (0%)

Query: 16  DADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           D+DI + LRP+TL E+ GQ +   N+++FI AAK R E LDHVL  GPPGLGKTTL+ ++
Sbjct: 21  DSDIEVTLRPKTLAEYIGQEKVKENMRIFISAAKGRGEPLDHVLLYGPPGLGKTTLSNII 80

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A E+GVN R TSGP I K GDLAALLTNL   D+LFIDEIHRLS  VEE+LYPAMEDF L
Sbjct: 81  ANEMGVNIRITSGPAIEKPGDLAALLTNLAPNDILFIDEIHRLSRAVEEVLYPAMEDFAL 140

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D+++G+GPSARS++I+L  FTL+ ATTR G LT+PL+DRFG+  RL  Y  ++L+TI+ R
Sbjct: 141 DIIIGKGPSARSIRIDLPHFTLVGATTRAGQLTSPLRDRFGVIQRLELYTADELQTIILR 200

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A + G+    + A E+A RSRGTPR+A RLL+RVRDFAEV     IT EIA  AL R+ 
Sbjct: 201 SAGILGVMCDPKGAYELARRSRGTPRVANRLLKRVRDFAEVMGNGRITEEIAAIALDRME 260

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           IDK+G D +D R L  I   +GGGPVG+ET++A L E    +ED+ EP+++Q GF+ RTP
Sbjct: 261 IDKLGLDAVDRRMLETIIHGYGGGPVGLETLAAALGEEAVTLEDVCEPFLMQLGFLARTP 320

Query: 315 RGRLLMPIAWQHLGIDIP 332
           RGR +  +A+ HLGI  P
Sbjct: 321 RGRCVTALAYSHLGIKTP 338


>gi|77163678|ref|YP_342203.1| Holliday junction DNA helicase B [Nitrosococcus oceani ATCC 19707]
 gi|254435093|ref|ZP_05048600.1| Holliday junction DNA helicase RuvB [Nitrosococcus oceani AFC27]
 gi|97190177|sp|Q3JES3|RUVB_NITOC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|76881992|gb|ABA56673.1| Holliday junction DNA helicase subunit RuvB [Nitrosococcus oceani
           ATCC 19707]
 gi|207088204|gb|EDZ65476.1| Holliday junction DNA helicase RuvB [Nitrosococcus oceani AFC27]
          Length = 348

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 180/308 (58%), Positives = 233/308 (75%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP  L ++ GQ +    ++VFI AA+AR EALDHVL  GPPGLGKTTL+ ++A EL VN
Sbjct: 23  LRPARLADYVGQPQVQEQMEVFIPAARARHEALDHVLIFGPPGLGKTTLSHIIANELEVN 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGPV+ + GDLAALLTNLE RDVLFIDEIHRLS +VEE+LYPAMED Q+D+M+GEG
Sbjct: 83  LRQTSGPVLERPGDLAALLTNLEPRDVLFIDEIHRLSPVVEEVLYPAMEDRQIDIMIGEG 142

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+K++L  FTL+ ATTR GLLT+PL+DRFGI  RL FY ++ L  IV+R A++ G+
Sbjct: 143 PAARSIKLDLVPFTLVGATTRAGLLTSPLRDRFGIVQRLEFYAVDHLVLIVERTARILGM 202

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
           A+  E A EIA RSRGTPRIA RLLRRVRD+AE+     +TR++A  AL  L +D  GFD
Sbjct: 203 AMEKEGALEIARRSRGTPRIANRLLRRVRDYAEIKGDGQVTRQVAQKALDLLDVDSHGFD 262

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   F GGPVG+++++A + E R  IED+IEP+++QQGF+ RTPRGR+   
Sbjct: 263 TMDRKLLLAMLEKFDGGPVGVDSLAAAIGEERGTIEDVIEPFLLQQGFVMRTPRGRMATR 322

Query: 322 IAWQHLGI 329
            A+ H G+
Sbjct: 323 HAYLHFGL 330


>gi|119944490|ref|YP_942170.1| Holliday junction DNA helicase B [Psychromonas ingrahamii 37]
 gi|166231543|sp|A1SSV6|RUVB_PSYIN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|119863094|gb|ABM02571.1| Holliday junction DNA helicase subunit RuvB [Psychromonas
           ingrahamii 37]
          Length = 334

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 179/312 (57%), Positives = 233/312 (74%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L ++ GQ +    +++FIEAA+ R EALDH+L  GPPGLGKTTL+ +VA EL VN
Sbjct: 23  IRPKFLADYEGQPQVNKQMEIFIEAARQRNEALDHLLIFGPPGLGKTTLSHIVANELEVN 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            ++TSGP++ KAGDLAALLTNLE+ DVLFIDEIHRLS +VEEILYPAMED+QLD+M+GEG
Sbjct: 83  IKTTSGPILEKAGDLAALLTNLEENDVLFIDEIHRLSPVVEEILYPAMEDYQLDIMIGEG 142

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  RL +Y+++ L  IV R A    L
Sbjct: 143 PAARSIKLDLPAFTLIGATTRAGSLTSPLRDRFGIVQRLEYYDLKSLTRIVLRSAGHFKL 202

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +++  A EIA RSRGTPRIA RLLRRVRD+A+V  A  I  ++A  AL  L +D  GFD
Sbjct: 203 NMSEAGAVEIARRSRGTPRIANRLLRRVRDYAQVKKANVIDDDVAKLALDMLEVDNEGFD 262

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  I   F GGPVG++ ++A + E ++ IED++EPY+IQQGF+QRTPRGR+   
Sbjct: 263 YMDRKLLMAILDTFMGGPVGLDNLAAAIGEEKETIEDVLEPYLIQQGFLQRTPRGRIATN 322

Query: 322 IAWQHLGIDIPH 333
             + H G D P 
Sbjct: 323 RTYLHFGFDKPQ 334


>gi|220928773|ref|YP_002505682.1| Holliday junction DNA helicase RuvB [Clostridium cellulolyticum
           H10]
 gi|219999101|gb|ACL75702.1| Holliday junction DNA helicase RuvB [Clostridium cellulolyticum
           H10]
          Length = 335

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 185/326 (56%), Positives = 234/326 (71%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           E L+      +D D   LRP+   E+ GQ +   NL VFIEAAK R EALDHVL  GPPG
Sbjct: 7   ERLVEAGTRSDDLDEVSLRPKRFGEYIGQAKVKDNLTVFIEAAKKRKEALDHVLLYGPPG 66

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLA +++ E+GVN R TSGP I KAGDLAA+LTNL   DVLFIDEIHRL+  VEEI
Sbjct: 67  LGKTTLASIISSEMGVNLRITSGPAIEKAGDLAAILTNLGTHDVLFIDEIHRLNRSVEEI 126

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPAMED+ LD+++G+GPSARS++++L +FTLI ATTR GLLT PL+DRFG+  +L  Y 
Sbjct: 127 LYPAMEDYALDIIIGKGPSARSIRLDLPKFTLIGATTRAGLLTAPLRDRFGVINKLEMYS 186

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            E+LK IV+R A +  + + DE A EIA RSRGTPRIA RLL+RVRDFA+V  + TI  E
Sbjct: 187 AEELKEIVRRSAGILNIGLDDEGAYEIARRSRGTPRIANRLLKRVRDFAQVKGSGTIELE 246

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +A  AL  L +D++G D +D   L  I   FGGGPVG++T++A + E    IED+ EPY+
Sbjct: 247 LAKHALDALEVDEIGLDGVDRNMLLSIINKFGGGPVGLDTLAASIGEEAGTIEDVYEPYL 306

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGID 330
           IQ GFI +TPRGR+    A+ H G++
Sbjct: 307 IQLGFINKTPRGRMTTKNAYAHFGLE 332


>gi|289578211|ref|YP_003476838.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter italicus
           Ab9]
 gi|297544492|ref|YP_003676794.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|289527924|gb|ADD02276.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter italicus
           Ab9]
 gi|296842267|gb|ADH60783.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 338

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 177/323 (54%), Positives = 243/323 (75%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           E +L+++ +QEDA    LRPR L E+ GQ +    LK++IEAAK R E LDHVL  GPPG
Sbjct: 3   ERILTQSFTQEDASEYSLRPRWLSEYIGQEKIKEELKIYIEAAKMRKEPLDHVLLYGPPG 62

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLA V++ E+GV  + TSGP I ++GDLAA+LTNL++ D+LFIDEIHRL+  VEEI
Sbjct: 63  LGKTTLATVISNEMGVGIKITSGPAIERSGDLAAILTNLQENDILFIDEIHRLNRSVEEI 122

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPAMEDF+LD+++G+GPSARS++++L RFTLI ATTR  L+T+PL+DRFG+  RL++Y 
Sbjct: 123 LYPAMEDFELDIVIGKGPSARSIRLSLPRFTLIGATTRAALMTSPLRDRFGVINRLDYYS 182

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +++LK I++R A +  + + ++AA EIA RSRGTPRIA RLL+RVRDFA+V     I  +
Sbjct: 183 VDELKEIIKRSANILNIGIDEDAALEIAKRSRGTPRIANRLLKRVRDFAQVRGNGYINFK 242

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
            +  AL  L +D+MG + +D + L  I   FGGGPVGI+ I+A + E  D IED+ EPY+
Sbjct: 243 TSKEALDVLGVDEMGLEYIDRKILVSIIEKFGGGPVGIDAIAASIGEDGDTIEDVYEPYL 302

Query: 305 IQQGFIQRTPRGRLLMPIAWQHL 327
           +Q GF+ RTPRGR++  +A+ +L
Sbjct: 303 LQIGFLNRTPRGRVVTKLAYDYL 325


>gi|88608213|ref|YP_506456.1| Holliday junction DNA helicase B [Neorickettsia sennetsu str.
           Miyayama]
 gi|123736351|sp|Q2GDJ0|RUVB_NEOSM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|88600382|gb|ABD45850.1| holliday junction DNA helicase RuvB [Neorickettsia sennetsu str.
           Miyayama]
          Length = 331

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 170/307 (55%), Positives = 238/307 (77%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+++E+F GQ     NL+VFI++A+ R ++LDHVLF GPPGLGKTTLA +++ EL   
Sbjct: 17  LRPKSIEKFVGQQRVVENLQVFIDSAQKRNDSLDHVLFCGPPGLGKTTLAHIISNELESR 76

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
             +T+GP+++KAGD+AA+LTNL   D+LFIDEIHRL   VEE+LYPAMED+ LDL+VG+G
Sbjct: 77  IHTTAGPLLSKAGDIAAILTNLHKNDILFIDEIHRLPSAVEEVLYPAMEDYHLDLIVGDG 136

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+A+S++INL++FTL+AATTR+G+L+NPL+DRFGI +RL+FY + +L  ++Q+ A+   +
Sbjct: 137 PAAKSIRINLAKFTLVAATTRIGMLSNPLRDRFGITLRLDFYTVSELLQLLQQAAERLSV 196

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + + A  E+A RSRGTPRIA RLL+RVRDF EV+ +  ITRE AD AL ++ +D+ G D
Sbjct: 197 NIENGAMIELAKRSRGTPRIALRLLKRVRDFLEVSDSDVITREFADLALNKMEVDQFGLD 256

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           +LD  Y+  IA+N+   PVGI+TI+A +SE  D+IE+LIEPY+I+ GF+ RT RGR L  
Sbjct: 257 KLDYTYMDFIAKNYSDNPVGIKTIAAAISEKEDSIEELIEPYLIKIGFLSRTQRGRRLTG 316

Query: 322 IAWQHLG 328
            A  +L 
Sbjct: 317 KALDYLS 323


>gi|323702065|ref|ZP_08113733.1| Holliday junction DNA helicase RuvB [Desulfotomaculum nigrificans
           DSM 574]
 gi|323532947|gb|EGB22818.1| Holliday junction DNA helicase RuvB [Desulfotomaculum nigrificans
           DSM 574]
          Length = 344

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 182/330 (55%), Positives = 240/330 (72%), Gaps = 1/330 (0%)

Query: 5   EGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E L+S     ED DI   LRP+ L+E+ GQ +A   + +F+EAA+ R EALDHVL  GPP
Sbjct: 3   ERLVSAVAQTEDNDIERSLRPKRLKEYIGQQKAKETIAIFVEAARQRGEALDHVLLFGPP 62

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTL+ ++A E+GVN R TSGP I + GDLAA+LTNL + D+LFIDEIHRLS  VEE
Sbjct: 63  GLGKTTLSNIIANEMGVNIRVTSGPAIERQGDLAAILTNLSEGDILFIDEIHRLSRAVEE 122

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILYPAMED+ LD+++G+GP ARS++++L +FTLI ATTR G+L +PL+DRFGI  RL FY
Sbjct: 123 ILYPAMEDYALDIVLGKGPGARSIRLDLPKFTLIGATTRAGMLASPLRDRFGIISRLEFY 182

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
             E+L  IV R A++  +++    A EIA RSRGTPR+A RLL+RVRD+A+V     IT 
Sbjct: 183 SAEELTEIVLRAARILNVSIEKSGAAEIARRSRGTPRVANRLLKRVRDYAQVKAQGEITA 242

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           E+A  AL    +D +G DQ D R L  I   F GGPVG++TI+A  SE  D +ED++EP+
Sbjct: 243 EVAAEALEFFEVDPLGMDQTDRRLLYTIIEKFNGGPVGLDTIAAATSEEPDTVEDVLEPF 302

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           ++Q GFI RTPRGR++ P A++HLGI + +
Sbjct: 303 LMQLGFIARTPRGRVVTPQAYRHLGIPLKN 332


>gi|20140283|sp|Q9KDI8|RUVB_BACHD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
          Length = 333

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 177/331 (53%), Positives = 247/331 (74%), Gaps = 1/331 (0%)

Query: 5   EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E ++S     E+A +   +RP + E++ GQ +   NLKVFIEAAK R EALDHVL  GPP
Sbjct: 3   ERMVSAEAQTEEAAVEQGIRPHSFEQYIGQEKVKQNLKVFIEAAKMREEALDHVLLYGPP 62

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTL+ ++A ELGV  R+TSGP I + GDLAA+LT LE  DVLFIDEIHRL+ +VEE
Sbjct: 63  GLGKTTLSTIIANELGVQMRTTSGPAIERPGDLAAILTALEPGDVLFIDEIHRLNRMVEE 122

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LYPAMED+ +D+++G+GP+ARSV+++L  FTL+ ATTR G+L++PL+DRFG+  RL +Y
Sbjct: 123 VLYPAMEDYCIDIVIGKGPTARSVRLDLPPFTLVGATTRAGMLSSPLRDRFGVMARLEYY 182

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            +E+L TI++R A +    +  +A+ EIA RSRGTPRIA RLLRRVRDFA+V+    I+ 
Sbjct: 183 NVEELTTIIERTATIFDTELERDASIEIARRSRGTPRIANRLLRRVRDFAQVSGDMRISS 242

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
             A  +L RL +D++G D +D + +  I   F GGPVG+ETISA + E  D IE++ EPY
Sbjct: 243 SRAIESLERLQVDRLGLDHIDHKLIKGIMTKFNGGPVGLETISATIGEETDTIEEVYEPY 302

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           ++Q GF+QRTPRGR++ P+A++H  +++P++
Sbjct: 303 LLQIGFLQRTPRGRVVTPLAYEHFNMEVPNK 333


>gi|310658620|ref|YP_003936341.1| ATP-dependent DNA helicase, component of ruvABC resolvasome
           [Clostridium sticklandii DSM 519]
 gi|308825398|emb|CBH21436.1| ATP-dependent DNA helicase, component of RuvABC resolvasome
           [Clostridium sticklandii]
          Length = 333

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 171/327 (52%), Positives = 245/327 (74%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           ++++ L+  ++  ED     LRPR + E+ GQ  A + L +FIEAAK R E LDHVL  G
Sbjct: 4   INQDRLIDSSLKIEDESEVSLRPRNISEYIGQTNAVNQLNIFIEAAKKRNETLDHVLLYG 63

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTL+ ++A E+GV+ + TSGP I +AGDLAA+LTNL+D+D+LFIDEIHR++  V
Sbjct: 64  PPGLGKTTLSHIIASEMGVDIKVTSGPAIERAGDLAAILTNLKDKDILFIDEIHRINRNV 123

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMED+ LD+++G+GPSARS+++++ +FTLI ATTR G+LT+PL+DRFG+ + L+
Sbjct: 124 EEVLYPAMEDYCLDIIIGKGPSARSIRLDIPKFTLIGATTRTGMLTSPLRDRFGVILNLD 183

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
            Y +E L  IV R AK+  + + ++AA EIA RSRGTPRIA RLL+RVRD+A+V     I
Sbjct: 184 LYSVEQLLEIVTRSAKILDVPINNDAAIEIARRSRGTPRIANRLLKRVRDYAQVMGDGKI 243

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T +IA  +LL   +D+ G D++D R L  I +NF GGPVG++T++A + E ++ IE++ E
Sbjct: 244 TLKIAKESLLVFEVDEEGLDKVDQRLLQSIIKNFAGGPVGLDTLAASIGEDKETIEEVCE 303

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLG 328
           P++IQ+GF+ RTPRGR+    A++H  
Sbjct: 304 PFLIQKGFLNRTPRGRVATDFAYKHFN 330


>gi|258593141|emb|CBE69452.1| Holliday junction DNA helicase ruvB [NC10 bacterium 'Dutch
           sediment']
          Length = 351

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 182/330 (55%), Positives = 243/330 (73%), Gaps = 1/330 (0%)

Query: 4   REGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           RE + +R +  ED ++   LRP+  +++ GQ +  +NL+VF+  AKAR E LDH+LF GP
Sbjct: 12  RERVANRQLQDEDQELEQSLRPKAWDDYIGQEKVKANLQVFVRGAKARREPLDHLLFYGP 71

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKT+LA ++A E+GVN R TSGPVI +  DLAA+L+NL ++DVLFIDEIHRL+ +VE
Sbjct: 72  PGLGKTSLAFMIASEMGVNIRVTSGPVIERQKDLAAILSNLREQDVLFIDEIHRLNPLVE 131

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E LYPAMED++LDL++G+GPSA+S ++ L RFTLI ATTR GLL +PL +RFG+  RL+F
Sbjct: 132 ETLYPAMEDYRLDLIIGQGPSAQSYRLKLPRFTLIGATTRAGLLASPLLNRFGVVQRLDF 191

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y   DL  IV R A++ G+++ +  A EIA RSRGTPRI  RLLRRVRDFA+V     IT
Sbjct: 192 YNDADLFRIVLRSAQILGVSIMENGAWEIARRSRGTPRIVNRLLRRVRDFAQVLGDGVIT 251

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           RE+A +AL RL +D  GFD++D R L  I   F GGPVGIET++  + E +D IED+ EP
Sbjct: 252 REVAQSALERLEVDTNGFDEMDRRILHTIIEKFAGGPVGIETLAVAVGEEKDTIEDVYEP 311

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++IQQGF+ RTPRGR +  +A+ H  +  P
Sbjct: 312 FLIQQGFLARTPRGRTVTRLAFDHFKLPRP 341


>gi|188586411|ref|YP_001917956.1| Holliday junction DNA helicase subunit RuvB [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179351098|gb|ACB85368.1| Holliday junction DNA helicase subunit RuvB [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 341

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 180/330 (54%), Positives = 244/330 (73%), Gaps = 1/330 (0%)

Query: 1   MMDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M   E +++R    ED  + S LRPR  +++ GQ +  +NL++FI+AA  R+EALDHVL 
Sbjct: 1   MSSDERIITRQQVGEDYQLDSDLRPRKFDDYIGQEKVKTNLEIFIKAAVERSEALDHVLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A ++GVN   TSGP I + GDLAA+LTNLE+RDVLFIDEIHRL  
Sbjct: 61  YGPPGLGKTTLAHIIAEQMGVNIHVTSGPAIERPGDLAAILTNLEERDVLFIDEIHRLPR 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEEILYPA+EDF +D+MVG+GPSARS++++L+ FTL+ ATTR G L++PL+DRFG+  R
Sbjct: 121 SVEEILYPALEDFSIDIMVGKGPSARSLRLDLAPFTLVGATTRAGSLSSPLRDRFGVVNR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L+FY ++DL  IV R A + G+ +T+E A ++A  SRGTPRIA RLL+R RD+A+V    
Sbjct: 181 LDFYSMQDLCQIVTRSADILGIEITEEGAKKLAQSSRGTPRIANRLLKRARDYAQVKADN 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT E+AD AL  L +D  G D++D R +  I   F GGPVG++TI+A +SE  + IED+
Sbjct: 241 KITAEVADKALEMLEVDSYGLDEIDRRLMHTIYNKFSGGPVGLDTIAAAISEEAETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
            EP+++Q GF+QRTPRGR+L   A  +LG+
Sbjct: 301 YEPFLLQLGFLQRTPRGRVLTKAAKNYLGL 330


>gi|148244816|ref|YP_001219510.1| Holliday junction DNA helicase RuvB [Candidatus Vesicomyosocius
           okutanii HA]
 gi|166231568|sp|A5CW96|RUVB_VESOH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|146326643|dbj|BAF61786.1| holliday junction DNA helicase RuvB [Candidatus Vesicomyosocius
           okutanii HA]
          Length = 342

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 176/320 (55%), Positives = 237/320 (74%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           ++ + ED  I+ +RP +LE + GQ +  S + +FI+AAK R + LDH L  GPPGLGKTT
Sbjct: 11  KDHNNEDLVITSIRPNSLENYIGQNDVKSQMMLFIKAAKKRKDTLDHCLIYGPPGLGKTT 70

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           LA V+A ++   F+ TSGPV+ +AGDLAA+LT L+  D+LFIDEIHRL+ +VEE LYPA+
Sbjct: 71  LANVIANQMSTGFKKTSGPVLERAGDLAAILTKLDPYDILFIDEIHRLNYVVEETLYPAL 130

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           EDF+LD++VGEG ++ SV++ L  FTLI ATTRVG+LT+PL+DRFGI  RL FY +EDLK
Sbjct: 131 EDFKLDIIVGEGLASHSVQLELPPFTLIGATTRVGMLTSPLRDRFGIIQRLQFYNVEDLK 190

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            IV+R A +  + +  + A EIA RSRGTPRIA RLLRRVRDFA+V     I ++IA  A
Sbjct: 191 MIVERSADILDIQIESKGALEIAKRSRGTPRIANRLLRRVRDFADVKANSMIHQDIAKEA 250

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           L+ L +D+ G +QLD  YL++I   F GGPVG++T++  + E R  +ED++EPY+IQQGF
Sbjct: 251 LIILKVDEAGLEQLDRDYLSIIMNKFSGGPVGLDTLATSIGEERGTLEDMVEPYLIQQGF 310

Query: 310 IQRTPRGRLLMPIAWQHLGI 329
           I RTPRGR +   A+ HLG+
Sbjct: 311 IMRTPRGRSITDAAYAHLGL 330


>gi|219871187|ref|YP_002475562.1| holliday junction DNA helicase B [Haemophilus parasuis SH0165]
 gi|219691391|gb|ACL32614.1| holliday junction DNA helicase B [Haemophilus parasuis SH0165]
          Length = 308

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 178/303 (58%), Positives = 230/303 (75%)

Query: 27  LEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTS 86
           L ++ GQ      +++FI+AAK R +ALDH+L  GPPGLGKTTLA ++A E+GVN R+TS
Sbjct: 2   LADYVGQPSVREQMEIFIKAAKLRNDALDHLLIFGPPGLGKTTLANIIANEMGVNIRTTS 61

Query: 87  GPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARS 146
           GPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS  +EE+LYPAMED+QLD+M+GEGP+ARS
Sbjct: 62  GPVLEKAGDLAAILTNLEPYDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARS 121

Query: 147 VKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDE 206
           +K++L  FTL+ ATTR G LT+PL+DRFGI  RL FY +EDL +IV R A    L +  +
Sbjct: 122 IKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVSRSAGCLNLNLATD 181

Query: 207 AACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLR 266
           AA EIA RSRGTPRIA RLLRRVRDFA+V +   I+ +IA  AL  L +D  GFD +D +
Sbjct: 182 AAYEIARRSRGTPRIANRLLRRVRDFADVRNNGIISSDIAKQALTMLDVDSEGFDFMDRK 241

Query: 267 YLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQH 326
            L+ +   F GGPVG++ ++A + E R+ IED++EPY+IQQGF+QRTPRGR+     + H
Sbjct: 242 LLSAVIERFDGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRIATSRTYSH 301

Query: 327 LGI 329
           LG+
Sbjct: 302 LGL 304


>gi|258545751|ref|ZP_05705985.1| Holliday junction DNA helicase RuvB [Cardiobacterium hominis ATCC
           15826]
 gi|258518996|gb|EEV87855.1| Holliday junction DNA helicase RuvB [Cardiobacterium hominis ATCC
           15826]
          Length = 336

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 180/311 (57%), Positives = 234/311 (75%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L E+ GQ    + +++FI+AA AR EALDHVL  GPPGLGKTT+A ++A ELGVN
Sbjct: 24  VRPKRLAEYIGQSALKAQMEIFIQAALARQEALDHVLLFGPPGLGKTTMANIIAAELGVN 83

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGP++ K GDLAA+LTNLE  DVLFIDEIHRLS  VEE+LY AMED+++D+M+GEG
Sbjct: 84  LRQTSGPILDKGGDLAAMLTNLEAHDVLFIDEIHRLSPAVEEVLYSAMEDYRIDIMIGEG 143

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+ + +  FTL+ ATTR GLL+ PL+DRFGI   L FY   +L  +V R  +L G+
Sbjct: 144 PAARSIILPIKPFTLVGATTRSGLLSAPLRDRFGISQHLQFYSESELTAVVLRVGELLGV 203

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  + A EI  R+RGTPRIA RLLRRVRD+A+V  +  ITR IAD AL  LAID  GFD
Sbjct: 204 QMERDGAIEIGKRARGTPRIANRLLRRVRDYADVRGSGIITRAIADEALELLAIDHCGFD 263

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            LD R L +I  +FGGGPVG++T++A + E R  +ED++EPY+IQQG++QRTPRGR+   
Sbjct: 264 NLDRRLLHIIIEHFGGGPVGLDTLAASVGEERGTLEDVVEPYLIQQGYLQRTPRGRVATA 323

Query: 322 IAWQHLGIDIP 332
            A+ HLGI++P
Sbjct: 324 RAYAHLGIEMP 334


>gi|307545152|ref|YP_003897631.1| Holliday junction DNA helicase B [Halomonas elongata DSM 2581]
 gi|307217176|emb|CBV42446.1| Holliday junction DNA helicase B [Halomonas elongata DSM 2581]
          Length = 340

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 180/308 (58%), Positives = 227/308 (73%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR L ++ GQ      L +FI AA+ R E+LDH L  GPPGLGKTTLA ++A E+ V 
Sbjct: 23  IRPRHLSDYIGQTRVREQLDIFISAARGRGESLDHTLVFGPPGLGKTTLANIIATEMDVG 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            ++TSGPV+ KAGDLAA+LTNL+  DVLFIDEIHRLS +VEE+LYPAMEDFQLD+++GEG
Sbjct: 83  LKATSGPVLEKAGDLAAMLTNLQPGDVLFIDEIHRLSAVVEEVLYPAMEDFQLDIVIGEG 142

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+K++L  FTL+ ATTR GLLT+PL+DRFGI  RL FY +E+L  IV R A L G+
Sbjct: 143 PAARSIKLDLPPFTLVGATTRAGLLTSPLRDRFGIVQRLEFYSVEELTEIVTRSAGLLGV 202

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
                 A E+A R+RGTPRIA RLLRRVRDFAEV  +  I  EIAD AL  L +D  G D
Sbjct: 203 DSDAGGATEVARRARGTPRIANRLLRRVRDFAEVRGSGHIDAEIADQALNMLHVDHHGLD 262

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D R L  +   F GGPVG+++++A + E RD IED+IEPY+IQQG + RT RGR++  
Sbjct: 263 HMDRRLLLAMIEKFDGGPVGVDSLAAAIGEERDTIEDVIEPYLIQQGLMMRTARGRVVTR 322

Query: 322 IAWQHLGI 329
            AWQH G+
Sbjct: 323 QAWQHFGL 330


>gi|122066015|sp|Q817W4|RUVB_BACCR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
          Length = 336

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 185/329 (56%), Positives = 242/329 (73%), Gaps = 1/329 (0%)

Query: 5   EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E LLSR  +  DA     LRP+TL ++ GQ +A  NL+VFIEAAK R E LDHVL  GPP
Sbjct: 6   ERLLSRESAYGDAVEDFPLRPQTLRQYIGQNKAKHNLEVFIEAAKMREETLDHVLLYGPP 65

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++A E+GVN ++TSGP I + GDLAA+LT L+  DVLFIDEIHRL   +EE
Sbjct: 66  GLGKTTLANIIANEMGVNVKTTSGPAIGRPGDLAAVLTALQPGDVLFIDEIHRLHRSIEE 125

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTR G L+ PL+DRFG+  R+ +Y
Sbjct: 126 VLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSRVEYY 185

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            ++ L  IV+R A++  + +   AA EIA R+RGTPRIA RLLRRVRDFA+V    T+T 
Sbjct: 186 TVDQLSAIVERTAEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRGNGTVTM 245

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           EI   AL  L +DK+G D +D + L  I   F GGPVG+ET+SA + E    IED+ EPY
Sbjct: 246 EITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSAPIGEESHTIEDVYEPY 305

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++Q GF+QRTPRGR++ P+A++H G++IP
Sbjct: 306 LLQIGFLQRTPRGRIVTPLAYEHFGMEIP 334


>gi|326390113|ref|ZP_08211674.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter ethanolicus
           JW 200]
 gi|325993761|gb|EGD52192.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 338

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 178/323 (55%), Positives = 242/323 (74%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           E +L+++ +QEDA    LRPR L E+ GQ +    LK++IEAAK R E LDHVL  GPPG
Sbjct: 3   ERILTQSFTQEDASEYSLRPRWLSEYIGQQKIKEELKIYIEAAKMRKEPLDHVLLYGPPG 62

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLA V++ E+GV  + TSGP I K+ DLAA+LTNL++ D+LFIDEIHRL+  VEEI
Sbjct: 63  LGKTTLATVISNEMGVGIKITSGPAIEKSRDLAAILTNLQENDILFIDEIHRLNRSVEEI 122

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPAMEDF+LD+++G+GPSARS++++L RFTLI ATTR  L+T+PL+DRFG+  RL++Y 
Sbjct: 123 LYPAMEDFELDIVIGKGPSARSIRLSLPRFTLIGATTRAALMTSPLRDRFGVINRLDYYS 182

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +E+LK I++R A +  + + ++AA EIA RSRGTPRIA RLL+RVRDFA+V     I  +
Sbjct: 183 VEELKEIIKRSANILNIGIDEDAALEIAKRSRGTPRIANRLLKRVRDFAQVRGNGYIDFK 242

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
            +  AL  L +D+MG + +D + L  I   FGGGPVGI+ I+A + E  D IED+ EPY+
Sbjct: 243 TSKEALDVLGVDEMGLEYIDRKILVSIIEKFGGGPVGIDAIAASIGEDGDTIEDVYEPYL 302

Query: 305 IQQGFIQRTPRGRLLMPIAWQHL 327
           +Q GF+ RTPRGR++  +A+ +L
Sbjct: 303 LQIGFLNRTPRGRVVTKLAYDYL 325


>gi|320120442|gb|EFE27854.2| holliday junction DNA helicase RuvB [Filifactor alocis ATCC 35896]
          Length = 337

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 179/333 (53%), Positives = 243/333 (72%), Gaps = 1/333 (0%)

Query: 3   DREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           D E L+S +   ED +    LRPRTLEE+ GQ +  S L +FI+AA+ R EALDHVL  G
Sbjct: 4   DNERLISSSFQTEDIETDYSLRPRTLEEYIGQDKVKSQLDIFIQAARLRGEALDHVLLYG 63

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTL+ ++A E+  N + TSGP I K+GDLAA+LTNL D DVLFIDEIHRL+  V
Sbjct: 64  PPGLGKTTLSYIIANEMSANIKITSGPAIEKSGDLAAILTNLSDGDVLFIDEIHRLNRTV 123

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILYPAMED  LD+++G+GPSARS++I+L +FTLI ATTR G+LT+PL+DRFG+ + L 
Sbjct: 124 EEILYPAMEDRCLDIIIGKGPSARSIRIDLPKFTLIGATTRSGMLTSPLRDRFGVILNLE 183

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
            Y   +LK I+ R A++  + + ++AA EIA RSRGTPRIA RLL+RVRD+A+V     I
Sbjct: 184 LYSATNLKKIISRSAQILEIYIEEQAAEEIAKRSRGTPRIANRLLKRVRDYAQVKGDGNI 243

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           +  I   +LL   +D+ G D +D + L  I + F GGPVGIET++A + E R+ +E++ E
Sbjct: 244 SLAITQESLLVFEVDEEGLDIVDKKILCSIIQKFSGGPVGIETLTASIGEDRETVEEVYE 303

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           PY+IQ+GF+ RTPRGR+    +++HLG ++P +
Sbjct: 304 PYLIQKGFLNRTPRGRMATEQSYRHLGFEMPDK 336


>gi|300112853|ref|YP_003759428.1| Holliday junction DNA helicase RuvB [Nitrosococcus watsonii C-113]
 gi|299538790|gb|ADJ27107.1| Holliday junction DNA helicase RuvB [Nitrosococcus watsonii C-113]
          Length = 348

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 184/325 (56%), Positives = 239/325 (73%), Gaps = 1/325 (0%)

Query: 6   GLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           GL+S   S+ +  +   LRP  L ++ GQ +    ++VFI AA+AR EALDHVL  GPPG
Sbjct: 6   GLVSPQESRGEKAVEFSLRPSKLADYIGQPQVQEQMEVFIPAARARHEALDHVLIFGPPG 65

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTL+ ++A EL VN R TSGPV+ + GDLAALLTNLE RDVLFIDEIHRLS +VEE+
Sbjct: 66  LGKTTLSHIIANELEVNLRQTSGPVLERPGDLAALLTNLEPRDVLFIDEIHRLSPVVEEV 125

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPAMED Q+D+M+GEGP+ARS+K++L  FTL+ ATTR GLLT+PL+DRFGI  RL FY 
Sbjct: 126 LYPAMEDRQIDIMIGEGPAARSIKLDLVPFTLVGATTRAGLLTSPLRDRFGIVQRLEFYA 185

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           ++ L  IV+R A++ G+ +  E A EIA RSRGTPRIA RLLRRVRD+AE+     +TR+
Sbjct: 186 VDHLVLIVERTARILGMTMEKEGALEIARRSRGTPRIANRLLRRVRDYAEIKVDGRVTRQ 245

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +A  AL  L +D  GFD +D + L  +   F GGPVG+++++A + E R  IED+IEP++
Sbjct: 246 VAQKALDLLDVDSHGFDTMDRKLLLAMIEKFDGGPVGVDSLAAAIGEERGTIEDVIEPFL 305

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGI 329
           +QQGFI RTPRGR     A+ H G+
Sbjct: 306 LQQGFIMRTPRGRTATRHAYLHFGL 330


>gi|58698306|ref|ZP_00373223.1| Holliday junction DNA helicase RuvB [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|225630964|ref|YP_002727755.1| Holliday junction DNA helicase RuvB [Wolbachia sp. wRi]
 gi|254767451|sp|C0R4X2|RUVB_WOLWR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|58535179|gb|EAL59261.1| Holliday junction DNA helicase RuvB [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|225592945|gb|ACN95964.1| Holliday junction DNA helicase RuvB [Wolbachia sp. wRi]
          Length = 324

 Score =  369 bits (946), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 180/308 (58%), Positives = 237/308 (76%), Gaps = 2/308 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  L++F GQ +   NLKVFI AA+ R EALDHVL  GPPGLGKTTLAQ+V++EL V+
Sbjct: 19  IRPEQLDDFVGQKDLIQNLKVFINAAQTRTEALDHVLLYGPPGLGKTTLAQIVSKELRVS 78

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           FR+TSGP+++KAGDLAA+LT L  +DVLFIDEIHRL+  +EE+LY AMEDF LD++VGEG
Sbjct: 79  FRATSGPLLSKAGDLAAVLTTLNAKDVLFIDEIHRLNRSIEEVLYTAMEDFCLDILVGEG 138

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PS R+++I+L  FTLI ATTR+GLL+ PL+DRFGIP+ L FY  E+L  I++RGA++   
Sbjct: 139 PSTRTLRIDLPPFTLIGATTRLGLLSAPLRDRFGIPLHLEFYSFEELVNIIKRGARVLSA 198

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + ++AA EIA R+RGTPRIA RLLRR+RDF EV   K IT E+AD+ LL+L +DKMG +
Sbjct: 199 EIEEDAAREIACRARGTPRIALRLLRRIRDFVEVKDDKKITYEVADSVLLKLGVDKMGLN 258

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           +LD+ YL  +      GPVGI+TIS  LSE    IE+ +EPY+I+  F++RTPRGR+L  
Sbjct: 259 KLDMNYLRFLFNT--SGPVGIDTISIALSEDVGNIEETVEPYLIKISFVKRTPRGRVLTD 316

Query: 322 IAWQHLGI 329
            A ++L +
Sbjct: 317 QAKEYLSL 324


>gi|261855149|ref|YP_003262432.1| Holliday junction DNA helicase RuvB [Halothiobacillus neapolitanus
           c2]
 gi|261835618|gb|ACX95385.1| Holliday junction DNA helicase RuvB [Halothiobacillus neapolitanus
           c2]
          Length = 348

 Score =  369 bits (946), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 185/332 (55%), Positives = 239/332 (71%), Gaps = 1/332 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M DR  + + +V++++A    LRP+ L ++ GQ      +++FI AA+ R EALDHVL  
Sbjct: 1   MTDRV-ITAESVTEDEAIERALRPKRLVDYVGQPAVVEQMEIFIPAARQRGEALDHVLIF 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A E+GV  + TSGPV+ + GDLAALLTNLE  DVLFIDEIHRLS +
Sbjct: 60  GPPGLGKTTLANIIAHEMGVGLKQTSGPVLERPGDLAALLTNLEPNDVLFIDEIHRLSAV 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILYPAMED Q+D+M+GEGP+ARS+K++L  FTL+ ATTR G+LT PL+DRFGI  RL
Sbjct: 120 VEEILYPAMEDHQIDIMIGEGPAARSIKLDLPPFTLVGATTRAGMLTGPLRDRFGIIQRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY + DL  IV R A+L G+++    A EIA R+RGTPRIA RLLRRVRDFAEV    T
Sbjct: 180 EFYSVADLTRIVSRSAQLMGVSIDAGGAQEIAARARGTPRIANRLLRRVRDFAEVRGNGT 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           + + +A+AAL  L +D  GFDQ D R L  +   F GGPVG++ I+A + E RD IED++
Sbjct: 240 VDQPMANAALDLLQVDARGFDQQDRRLLEALIHKFDGGPVGLDNIAAAIGEARDTIEDVL 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EP++IQQGF+ RT RGR+     + H G   P
Sbjct: 300 EPFLIQQGFLVRTARGRMATRQTYAHFGFRPP 331


>gi|290967871|ref|ZP_06559421.1| Holliday junction DNA helicase RuvB [Megasphaera genomosp. type_1
           str. 28L]
 gi|290782010|gb|EFD94588.1| Holliday junction DNA helicase RuvB [Megasphaera genomosp. type_1
           str. 28L]
          Length = 338

 Score =  368 bits (945), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 182/312 (58%), Positives = 236/312 (75%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP  L+E+ GQ +A  NL+VFI AAK R EALDHVL  GPPGLGKTTLA +VA E+ V+
Sbjct: 21  LRPHYLKEYIGQQQAKQNLEVFIGAAKLRQEALDHVLLYGPPGLGKTTLAGIVANEMNVS 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGP I + GDLAALLTNL++RDVLFIDEIHRLS  VEE+LY AMED+ LD+++G+G
Sbjct: 81  LRITSGPAIERPGDLAALLTNLQERDVLFIDEIHRLSHSVEEVLYAAMEDYALDIVIGKG 140

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSARSV+I+L  FTL+ ATT+VG L  PL+DRFG+  RL FY+ E+L  I+QR A +  +
Sbjct: 141 PSARSVRIDLPPFTLVGATTQVGRLAPPLRDRFGVICRLEFYKPEELVLIIQRTATILNI 200

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
           A+    A EIA RSRGTPRIA RLL+RVRDFA++A    I  ++A +AL RL +D  G D
Sbjct: 201 AIDVSGAMEIARRSRGTPRIANRLLKRVRDFAQMAGETFIHEKMAASALTRLEVDSCGLD 260

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           + D + L +I   F GGPVG++TI+A +SE  DA+ED+ EP+++QQGF+ RTPRGR++  
Sbjct: 261 RTDRKVLEIIIEKFAGGPVGLDTIAAAISESVDAVEDVYEPFLMQQGFLHRTPRGRVVTE 320

Query: 322 IAWQHLGIDIPH 333
            A++HLG+ +P 
Sbjct: 321 AAYRHLGLPLPQ 332


>gi|160872675|ref|ZP_02062807.1| holliday junction DNA helicase RuvB [Rickettsiella grylli]
 gi|159121474|gb|EDP46812.1| holliday junction DNA helicase RuvB [Rickettsiella grylli]
          Length = 351

 Score =  368 bits (945), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 184/327 (56%), Positives = 234/327 (71%), Gaps = 1/327 (0%)

Query: 7   LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           L S    +ED  I   +RP  L ++ GQ   C  + +FI AA+AR EALDHVL VGPPGL
Sbjct: 7   LTSAKKKREDEKIYPRIRPVALADYLGQTSVCEQMTLFIHAARARQEALDHVLIVGPPGL 66

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLA ++A E+ V+ + TSGPV+ +AGDLAALLT+LE  +VLFIDEIHRLS ++EEIL
Sbjct: 67  GKTTLATIIAHEMAVSLKQTSGPVLERAGDLAALLTHLEPNEVLFIDEIHRLSPVIEEIL 126

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           YPA+ED+QLD+M+GEGP+ARS+K++L  FTLI ATTR GLLT+PL+DRFGI  RL FY +
Sbjct: 127 YPALEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGLLTSPLRDRFGIVQRLTFYSV 186

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
            DL  IV R A +  + +    A EIA R+RGTPRIA RLLRRVRDFAEV     I + +
Sbjct: 187 ADLCRIVTRSAGILKVTIDSMGANEIAKRARGTPRIANRLLRRVRDFAEVKSDGKIDQSL 246

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           A  AL  L +DK GFDQ D + L  +   F GGPVG+++++A + E RD IED+IEPY+I
Sbjct: 247 AAQALDLLEVDKEGFDQQDRKLLLTLIEKFDGGPVGLDSLAAAIGEERDTIEDVIEPYLI 306

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           QQ FI RTPRGR+     + H  + +P
Sbjct: 307 QQAFIMRTPRGRVATKKTFSHFSLAMP 333


>gi|172058106|ref|YP_001814566.1| Holliday junction DNA helicase RuvB [Exiguobacterium sibiricum
           255-15]
 gi|229564228|sp|B1YJR1|RUVB_EXIS2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|171990627|gb|ACB61549.1| Holliday junction DNA helicase RuvB [Exiguobacterium sibiricum
           255-15]
          Length = 331

 Score =  368 bits (945), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 182/325 (56%), Positives = 239/325 (73%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           E +LS +   ED +   LRP+TL+++ GQ +A  NL VFI+AAK R E LDHVL  GPPG
Sbjct: 3   ERILSESAHAEDQEEWSLRPQTLDQYIGQEKAKGNLSVFIQAAKIRQETLDHVLLYGPPG 62

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLA ++A E+GV  ++T+GP I + GDLAA+L++LE  DVLFIDEIHRLS  +EEI
Sbjct: 63  LGKTTLATIIANEMGVGIKTTAGPAIERPGDLAAILSSLEPGDVLFIDEIHRLSRSIEEI 122

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPAMED+ LD+++G+G  ARSV+I+L  FTL+ ATTR G+L+ PL+DRFG+ ++L +Y 
Sbjct: 123 LYPAMEDYCLDIVIGQGELARSVRIDLPPFTLVGATTRAGMLSAPLRDRFGVTLKLEYYT 182

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           + +L  IV R ++L G      AA  IA+RSRGTPR+A RLLRRVRDFA+VAH   I   
Sbjct: 183 MPELAAIVTRTSRLFGFEADRMAAEAIALRSRGTPRVANRLLRRVRDFAQVAHQTAIDAT 242

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +A  AL RL +D +G D +D R L  +A  F GGPVG+ETI+A + E    IED+ EPY+
Sbjct: 243 LATGALDRLHVDALGLDDVDHRLLRSLAERFAGGPVGLETIAATIGEDAQTIEDVYEPYL 302

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGI 329
           +QQGF+QRTPRGR+L P A +HLG+
Sbjct: 303 LQQGFLQRTPRGRVLTPFARRHLGL 327


>gi|158320754|ref|YP_001513261.1| Holliday junction DNA helicase B [Alkaliphilus oremlandii OhILAs]
 gi|167012665|sp|A8MHI3|RUVB_ALKOO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|158140953|gb|ABW19265.1| Holliday junction DNA helicase RuvB [Alkaliphilus oremlandii
           OhILAs]
          Length = 335

 Score =  368 bits (945), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 183/330 (55%), Positives = 239/330 (72%), Gaps = 3/330 (0%)

Query: 1   MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M DR  +LS  V  ED +I   LRP+ L ++ GQ +    +K+FIEAA  R EALDHVL 
Sbjct: 4   MEDR--ILSNTVRNEDYEIEGGLRPKFLNDYIGQDKVKERMKIFIEAALHRNEALDHVLL 61

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTL+ ++A E+ VN + TSGPVI +AGDLAA+LTNL + DVLFIDEIHR++ 
Sbjct: 62  YGPPGLGKTTLSNIIANEMNVNIKITSGPVIERAGDLAAILTNLSENDVLFIDEIHRINR 121

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEE+LYPAMED+ LD+++G+GPSARS++++L +FTLI ATTR GLLT PL+DRFG+  +
Sbjct: 122 TVEEVLYPAMEDYALDIIIGKGPSARSIRLDLPKFTLIGATTRAGLLTGPLRDRFGVIAK 181

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L  Y+ E LK I++R A +  + + D  A EIA RSRGTPRIA RLL+RVRDFA+V    
Sbjct: 182 LELYDTEQLKEIIRRSAYILNVYIDDNGAKEIASRSRGTPRIANRLLKRVRDFAQVRGDG 241

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT EIA  AL  L ID +G D  D + +  +  NFGGGPVG++T++A   E R+ IED+
Sbjct: 242 RITLEIAQEALELLEIDLLGLDNTDKKMIETMIHNFGGGPVGLDTLAAATGEERNTIEDV 301

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
            EPY++Q GFI RTPRGR+++  A+ H  I
Sbjct: 302 YEPYLLQIGFINRTPRGRIVLEKAYNHFNI 331


>gi|42520917|ref|NP_966832.1| Holliday junction DNA helicase B [Wolbachia endosymbiont of
           Drosophila melanogaster]
 gi|47606092|sp|P61539|RUVB_WOLPM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|42410658|gb|AAS14766.1| Holliday junction DNA helicase RuvB [Wolbachia endosymbiont of
           Drosophila melanogaster]
          Length = 326

 Score =  368 bits (945), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 180/308 (58%), Positives = 236/308 (76%), Gaps = 2/308 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  L++F GQ +   NLKVFI AA+ R EALDHVL  GPPGLGKTTLAQ+V++EL V+
Sbjct: 19  IRPEQLDDFVGQKDLIQNLKVFINAAQTRTEALDHVLLYGPPGLGKTTLAQIVSKELRVS 78

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           FR+TSGP+++KAGDLAA+LT L  +DVLFIDEIHRL+  +EE+LY AMEDF LD++VGEG
Sbjct: 79  FRATSGPLLSKAGDLAAVLTTLNAKDVLFIDEIHRLNRSIEEVLYTAMEDFCLDILVGEG 138

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PS R+++I+L  FTLI ATTR+GLL+ PL+DRFGIP+ L FY  E+L  I++RGA++   
Sbjct: 139 PSTRTLRIDLPPFTLIGATTRLGLLSAPLRDRFGIPLHLEFYSFEELVNIIKRGARVLSA 198

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + ++AA EIA R+RGTPRIA RLLRR+RDF EV   K IT E+AD+ LL+L +DKMG +
Sbjct: 199 EIEEDAAREIACRARGTPRIALRLLRRIRDFVEVKDDKKITYEVADSVLLKLGVDKMGLN 258

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           +LD+ YL  +      GPVGI+TIS  LSE    IE+ +EPY+I+  F++RTPRGR+L  
Sbjct: 259 KLDMNYLRFLFNT--SGPVGIDTISIALSEDVGNIEETVEPYLIKISFVKRTPRGRVLTD 316

Query: 322 IAWQHLGI 329
            A ++L  
Sbjct: 317 QAKEYLSF 324


>gi|126207772|ref|YP_001052997.1| Holliday junction DNA helicase RuvB [Actinobacillus
           pleuropneumoniae L20]
 gi|165975739|ref|YP_001651332.1| Holliday junction DNA helicase RuvB [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|126096564|gb|ABN73392.1| holliday junction ATP-dependent DNA helicase RuvB [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|165875840|gb|ABY68888.1| Holliday junction DNA helicase [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
          Length = 294

 Score =  368 bits (945), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 177/290 (61%), Positives = 226/290 (77%)

Query: 40  LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAAL 99
           +++FI+AAK R EALDH+L  GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+
Sbjct: 1   MEIFIKAAKLRDEALDHLLIFGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAAM 60

Query: 100 LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA 159
           LTNLE  DVLFIDEIHRLS  +EE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ A
Sbjct: 61  LTNLEPYDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGA 120

Query: 160 TTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTP 219
           TTR G LT+PL+DRFGI  RL FY ++DL +IV+R A    L ++ + A E+A RSRGTP
Sbjct: 121 TTRAGSLTSPLRDRFGIVQRLEFYSVDDLTSIVKRSADCLNLNLSPDGAYEVARRSRGTP 180

Query: 220 RIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGP 279
           RIA RLLRRVRD+A+V +   IT +IA  AL  L +D  GFD +D++ L  I   F GGP
Sbjct: 181 RIANRLLRRVRDYADVRNNGVITSDIAKQALAMLDVDSEGFDFMDIKLLQAIVERFDGGP 240

Query: 280 VGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           VG++ ++A + E RD IED++EPY+IQQGF+QRTPRGR+     + HLGI
Sbjct: 241 VGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTPRGRIATSRTYAHLGI 290


>gi|301060141|ref|ZP_07201008.1| Holliday junction DNA helicase RuvB [delta proteobacterium NaphS2]
 gi|300445653|gb|EFK09551.1| Holliday junction DNA helicase RuvB [delta proteobacterium NaphS2]
          Length = 342

 Score =  368 bits (945), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 180/310 (58%), Positives = 234/310 (75%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+TL E+ GQ +   NL VFI AAK R EALDHVLF G PGLGKT+L+ ++A ELGVN
Sbjct: 21  LRPKTLAEYVGQTDMKRNLSVFIAAAKGREEALDHVLFHGSPGLGKTSLSHIIAGELGVN 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            RSTSGPVI + GDLAA+LTNL+ +DVLFIDEIHRL+ +VEEILYPAMED++LD+++G+G
Sbjct: 81  IRSTSGPVIERPGDLAAILTNLQPKDVLFIDEIHRLNHVVEEILYPAMEDYELDIIIGQG 140

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSAR++KI L  FTL+ ATTR GLLT PL+DRFG+ +RL+FYE EDL  IV R A +  +
Sbjct: 141 PSARTMKIPLPPFTLVGATTRAGLLTPPLRDRFGVILRLDFYEPEDLYKIVVRSAGILEI 200

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + DE A EIA R+RGTPRIA RLLRRVRDFAEV     IT+++A  AL  L +D  G D
Sbjct: 201 PIKDEGALEIAKRARGTPRIANRLLRRVRDFAEVEADGVITQKVASRALDMLEVDDQGLD 260

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           ++D   +  I   F GGP+G+ ++ A + E +D IED+ EP++IQ G+I+RTP+GR+   
Sbjct: 261 KMDRFIMHTIIEKFDGGPIGLSSLCAAVGEEKDTIEDVYEPFLIQSGYIKRTPQGRVATR 320

Query: 322 IAWQHLGIDI 331
            A+ HL +++
Sbjct: 321 RAYLHLHLEV 330


>gi|326795235|ref|YP_004313055.1| Holliday junction ATP-dependent DNA helicase ruvB [Marinomonas
           mediterranea MMB-1]
 gi|326545999|gb|ADZ91219.1| Holliday junction ATP-dependent DNA helicase ruvB [Marinomonas
           mediterranea MMB-1]
          Length = 338

 Score =  368 bits (944), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 181/334 (54%), Positives = 245/334 (73%), Gaps = 3/334 (0%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++++ ++S      ++ +   +RP+ L+E+ GQ      +++FI+AA+ R+E LDH L 
Sbjct: 1   MIEQDRIISSETQGSESQVDRAIRPQMLDEYIGQPIVREQMEIFIQAARQRSEPLDHTLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+G + ++TSGPV+ +AGDLAALLTNLED DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGADIKTTSGPVLERAGDLAALLTNLEDGDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            +EE+LYPAMED+QLD+M+GEGP+ARS+KI +  FTL+ ATTR GLLT+PL+DRFGI  R
Sbjct: 121 AIEEVLYPAMEDYQLDIMIGEGPAARSIKIEIPPFTLVGATTRAGLLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAAC-EIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           L FY+++ L TIV R A   G+ V DE+ C E+A RSRGTPRIA RLLRRVRD A+V   
Sbjct: 181 LEFYDVQSLTTIVGRSASKMGV-VLDESGCFEVARRSRGTPRIANRLLRRVRDVAQVGGE 239

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
           K +  ++A  AL  L++D  GFD LD R L  +   F G PVG+++I+A + E +D IED
Sbjct: 240 KVVGEKVARRALDMLSVDSQGFDHLDRRMLLTMIEKFDGRPVGLDSIAAAVGEDKDTIED 299

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           +IEP++IQQGF+ RTPRGR +   A++H    +P
Sbjct: 300 VIEPFLIQQGFVIRTPRGRQVTKRAYEHFNYQLP 333


>gi|121535580|ref|ZP_01667387.1| Holliday junction DNA helicase RuvB [Thermosinus carboxydivorans
           Nor1]
 gi|121305820|gb|EAX46755.1| Holliday junction DNA helicase RuvB [Thermosinus carboxydivorans
           Nor1]
          Length = 338

 Score =  368 bits (944), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 180/308 (58%), Positives = 230/308 (74%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPR L E+ GQ +   NL VFI+AA  R EALDHVL  GPPGLGKTTLA ++A ELGVN
Sbjct: 20  LRPRRLAEYIGQDQIKHNLTVFIQAAMTRGEALDHVLLYGPPGLGKTTLASIIANELGVN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGP I + GDLAALLTNL ++DVLFIDEIHRL   VEEILY AMED+ LD+++G+G
Sbjct: 80  LRITSGPAIERPGDLAALLTNLGEKDVLFIDEIHRLPRSVEEILYSAMEDYALDIIIGKG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSARS++++L RFTL+ ATTR G L +PL+DRFG+  RL +Y+++ L  IV+R A +  +
Sbjct: 140 PSARSIRLDLPRFTLVGATTRAGALASPLRDRFGVICRLEYYDVKQLVCIVKRAADILNI 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
           A+  + A EIA RSRGTPR+A RLL+RVRDFA+V     IT  +AD AL RL +D+ G D
Sbjct: 200 AIDAQGAEEIARRSRGTPRVANRLLKRVRDFAQVTGDGVITAALADEALARLDVDQCGLD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           + D   L +I   F GGPVG++T++A +SE  D +ED+ EP+++Q GFIQRTPRGR+  P
Sbjct: 260 RTDRTLLRIIIEKFNGGPVGLDTLAAAISEETDTVEDVYEPFLLQLGFIQRTPRGRVATP 319

Query: 322 IAWQHLGI 329
            A+ HLGI
Sbjct: 320 AAYHHLGI 327


>gi|317057203|ref|YP_004105670.1| Holliday junction DNA helicase RuvB [Ruminococcus albus 7]
 gi|315449472|gb|ADU23036.1| Holliday junction DNA helicase RuvB [Ruminococcus albus 7]
          Length = 345

 Score =  368 bits (944), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 179/317 (56%), Positives = 237/317 (74%), Gaps = 1/317 (0%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           + +D +ISL RP TL E+ GQ +   N+K++I+AAK R ++LDHVL  GPPGLGKTTLA 
Sbjct: 22  TTDDFEISL-RPLTLAEYIGQEKVKENMKIYIDAAKRRGDSLDHVLLYGPPGLGKTTLAN 80

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++A E+GVN R+TSGP I K GDLAALLTNLE  DVLFIDEIHRLS  VEEILYPAMED+
Sbjct: 81  IIAHEMGVNIRTTSGPAIEKPGDLAALLTNLEKGDVLFIDEIHRLSRQVEEILYPAMEDY 140

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            LD+++G+GP+ARS++I L++FTLI ATTR G L+ PL+DRFG+ + +  Y +E+L  IV
Sbjct: 141 ALDIIMGKGPAARSIRIELNKFTLIGATTRSGQLSAPLRDRFGMLMHMEMYSVEELADIV 200

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           +R A + G++  D+ A EIA R+R TPRIA R L+RVRDFAEV     IT++IA  AL R
Sbjct: 201 KRSATILGVSCDDDGATEIAARARCTPRIANRYLKRVRDFAEVIGNGRITQDIAKIALNR 260

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           + +DK+G D LD R L MI + + GGPVG+ T++A + E    +ED+ EPY++Q GF+ +
Sbjct: 261 MEVDKLGLDSLDRRLLEMIIKGYNGGPVGLSTLAAAIGEEAVTLEDVCEPYLMQLGFLAK 320

Query: 313 TPRGRLLMPIAWQHLGI 329
           TPRGR    +A+ HLGI
Sbjct: 321 TPRGRCATQLAYDHLGI 337


>gi|268608396|ref|ZP_06142123.1| Holliday junction DNA helicase RuvA [Ruminococcus flavefaciens
           FD-1]
          Length = 352

 Score =  368 bits (944), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 183/329 (55%), Positives = 243/329 (73%), Gaps = 1/329 (0%)

Query: 7   LLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           ++S   +QED+DI + LRP+TL E+ GQ +A  NL ++IEAAK R+E LDHVL  GPPGL
Sbjct: 13  VISPENTQEDSDIEVSLRPQTLHEYIGQDKAKENLAIYIEAAKRRSEPLDHVLLYGPPGL 72

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTL+ ++A ELGVN R T+GP I K GDL +LLT+L D DVLFIDEIHRLS  VEEIL
Sbjct: 73  GKTTLSGIIAHELGVNLRVTTGPAIEKPGDLVSLLTSLSDNDVLFIDEIHRLSRAVEEIL 132

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           YPA+ED  +D+++G+GP+ARS++++L  FTLI ATTR G L+ PL+DRFG+  RL  Y  
Sbjct: 133 YPALEDRVIDIIIGKGPAARSIRMDLKPFTLIGATTRAGQLSAPLRDRFGVVQRLELYTK 192

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           E L  I++R A + G+  T + A EIA R+RGTPRIA RLL+RVRDFA+V     IT+EI
Sbjct: 193 EQLTDIIRRSAMILGIPCTADGAAEIAGRARGTPRIANRLLKRVRDFADVMGNGQITQEI 252

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           A  AL RL ID +G D LD R L MI + +GGGPVG+ET+++ ++E    +ED+ EP+++
Sbjct: 253 ASIALSRLEIDNLGLDGLDRRMLEMIIKGYGGGPVGLETLASAINEESVTLEDVCEPFLM 312

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           Q GF+ RTPRGR+   +A++HLG   P +
Sbjct: 313 QLGFLGRTPRGRVATRLAYEHLGYSQPEQ 341


>gi|218888288|ref|YP_002437609.1| Holliday junction DNA helicase RuvB [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218759242|gb|ACL10141.1| Holliday junction DNA helicase RuvB [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 334

 Score =  368 bits (944), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 180/308 (58%), Positives = 236/308 (76%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR+L++F GQ E  +NLKVF+ AA  R +A+DH+LF G PGLGKTTLAQ++A ELGVN
Sbjct: 25  VRPRSLDDFIGQDELRANLKVFVAAALERGQAMDHLLFYGNPGLGKTTLAQIIAAELGVN 84

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
             STSGPV+ ++GDLAA+LTNL   D+LF+DEIHR+ + VEE+LYPA+EDF+LDL++G+G
Sbjct: 85  LVSTSGPVLERSGDLAAILTNLGRHDILFVDEIHRMPVAVEEVLYPALEDFKLDLVIGQG 144

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P AR+VKI+L  FTL+ ATTR+GLL++PL+DRFGI  RL FY   DL  IV R A++ G 
Sbjct: 145 PGARTVKIDLEPFTLVGATTRIGLLSSPLRDRFGIISRLEFYSPADLARIVTRTARILGA 204

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T E A EI  RSRGTPRIA RLLRRVRDFA V    TIT E A AAL R+ +D+ G D
Sbjct: 205 NLTPEGAVEIGRRSRGTPRIANRLLRRVRDFAAVHGNGTITPEQASAALGRMDVDESGLD 264

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           Q+D + L+++  +FGGGPVG++T++   SE    IED+ EPY+IQ GF++RTPRGR+   
Sbjct: 265 QMDRKLLSVLIEHFGGGPVGVKTLAVACSEEVRTIEDIYEPYLIQCGFLKRTPRGRVATA 324

Query: 322 IAWQHLGI 329
            A++HL +
Sbjct: 325 KAYRHLNL 332


>gi|225018932|ref|ZP_03708124.1| hypothetical protein CLOSTMETH_02883 [Clostridium methylpentosum
           DSM 5476]
 gi|224948312|gb|EEG29521.1| hypothetical protein CLOSTMETH_02883 [Clostridium methylpentosum
           DSM 5476]
          Length = 352

 Score =  368 bits (944), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 183/335 (54%), Positives = 243/335 (72%), Gaps = 6/335 (1%)

Query: 1   MMDREG-----LLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEAL 54
           M DRE      + + + S ED D+   LRP+TL E+ GQ +A  NL ++IEAA+ R EAL
Sbjct: 9   MFDRETDFENRITTPDFSPEDVDVEFTLRPKTLGEYIGQDKAKENLSIYIEAARQRGEAL 68

Query: 55  DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEI 114
           DHVL  GPPGLGKTTL+ ++A E+ VN R TSGP I K GDLAALL+NL + DVLFIDEI
Sbjct: 69  DHVLLYGPPGLGKTTLSMIIANEMNVNIRVTSGPAIEKPGDLAALLSNLNENDVLFIDEI 128

Query: 115 HRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRF 174
           HRLS  VEE+LYPAMED+ LD+++G+GP+ARS++I+L +FTL+ ATTR G LT PL+DRF
Sbjct: 129 HRLSRAVEEVLYPAMEDYALDIIIGKGPAARSIRIDLPKFTLVGATTRAGQLTAPLRDRF 188

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
           G+ +RL  Y  E L  I+ R A L  +    E A E+A RSRGTPRIA RLL+RVRDFA+
Sbjct: 189 GVILRLELYTDEQLCEIILRSAALLQIPCDREGALELARRSRGTPRIANRLLKRVRDFAQ 248

Query: 235 VAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRD 294
           V     +++++   +L +L ID++G + LD R L+ + +N+GGGPVG+ETI+A L E   
Sbjct: 249 VLGDGVVSKDVVGTSLDKLEIDELGLEPLDRRMLSTMIKNYGGGPVGLETIAAVLGEEAV 308

Query: 295 AIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
            IED+ EPY++Q GF+ RTPRGR +  +A+QHLG+
Sbjct: 309 TIEDVYEPYLMQLGFLSRTPRGRCVTALAYQHLGL 343


>gi|253578704|ref|ZP_04855975.1| Holliday junction DNA helicase RuvA [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849647|gb|EES77606.1| Holliday junction DNA helicase RuvA [Ruminococcus sp. 5_1_39BFAA]
          Length = 334

 Score =  368 bits (944), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 172/329 (52%), Positives = 249/329 (75%), Gaps = 1/329 (0%)

Query: 7   LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           +++ +V++ED  +   LRP+TL+++ GQ +  S LKV+IEAAK R +ALDHVLF GPPGL
Sbjct: 5   IITTDVTEEDFSLEGNLRPQTLDDYIGQEKTKSTLKVYIEAAKQRHDALDHVLFYGPPGL 64

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTL+ ++A E+GV+ + TSGP I K G++AA+L NL++ D+LF+DEIHRL+  VEE+L
Sbjct: 65  GKTTLSGIIANEMGVHMKVTSGPAIEKPGEMAAILNNLQEGDILFVDEIHRLNRQVEEVL 124

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           YPAMED+ +D+M+G+G SARS++++L +FTL+ ATTR GLL+ PL+DRFG+   L FY  
Sbjct: 125 YPAMEDYAIDIMIGKGASARSIRLDLPKFTLVGATTRAGLLSAPLRDRFGVMHHLEFYTH 184

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           E+LKTI+ R A++ G+ + ++ A EIA RSRGTPR+A RLL+RVRDFA+V +   IT ++
Sbjct: 185 EELKTIIIRSAQVLGVEIDEKGAAEIAKRSRGTPRLANRLLKRVRDFAQVKYDGRITYDV 244

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           A  AL  L +D+ G D++D R L  +  NF GGPVG+ET++A + E    +ED+ EPY++
Sbjct: 245 ACFALNLLEVDQYGLDKIDRRILQTMIVNFQGGPVGLETLAAAIGEDSGTLEDVYEPYLL 304

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           Q GF+ RTPRGR+   +A++HLG  +P +
Sbjct: 305 QNGFLNRTPRGRMASALAYEHLGYQMPEK 333


>gi|86135095|ref|ZP_01053677.1| Holliday junction ATP-dependent DNA helicase RuvB [Polaribacter sp.
           MED152]
 gi|85821958|gb|EAQ43105.1| Holliday junction ATP-dependent DNA helicase RuvB [Polaribacter sp.
           MED152]
          Length = 340

 Score =  368 bits (944), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 185/321 (57%), Positives = 235/321 (73%), Gaps = 1/321 (0%)

Query: 9   SRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           + + S E+ D+   LRP + ++FTGQ +A  NLK+F+EAA  R EALDH LF GPPGLGK
Sbjct: 9   NSHYSNEELDVEKKLRPLSFDDFTGQDQALENLKIFVEAANQRGEALDHALFHGPPGLGK 68

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127
           TTLA ++A EL V  + TSGPV+ K GDLA LLTNL++RDVLFIDEIHRLS IVEE LY 
Sbjct: 69  TTLAHILANELQVGIKVTSGPVLDKPGDLAGLLTNLDERDVLFIDEIHRLSPIVEEYLYS 128

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           AMED+++D+M+  GP+AR+V+INL  FTLI ATTR GLLT P++ RFGI  RL++Y  E 
Sbjct: 129 AMEDYKIDIMIESGPNARTVQINLEPFTLIGATTRSGLLTAPMRARFGISSRLHYYSTEL 188

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           L TI+QR A +  + ++ EAA EIA RSRGTPRIA  LLRRVRDFA++     IT EIA 
Sbjct: 189 LTTIIQRSASILQVPISMEAAVEIAGRSRGTPRIANALLRRVRDFAQIKGDGKITIEIAK 248

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
            AL  L +D  G D++D + L  I   F GGPVGI TI+  +SE  + IE++ EP++IQQ
Sbjct: 249 YALKALHVDAHGLDEMDNKILATIIDKFKGGPVGISTIATAVSENTETIEEVYEPFLIQQ 308

Query: 308 GFIQRTPRGRLLMPIAWQHLG 328
           GFI RTPRGR +  +A++HLG
Sbjct: 309 GFIMRTPRGREVTELAYKHLG 329


>gi|85712319|ref|ZP_01043370.1| Holliday junction resolvasome, helicase subunit [Idiomarina baltica
           OS145]
 gi|85693946|gb|EAQ31893.1| Holliday junction resolvasome, helicase subunit [Idiomarina baltica
           OS145]
          Length = 322

 Score =  367 bits (943), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 176/295 (59%), Positives = 227/295 (76%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L ++TGQ      +++FIEAA+ R EALDH+L  GPPGLGKTTLA +VA EL VN
Sbjct: 28  IRPKKLADYTGQKHVVEQMEIFIEAARKREEALDHLLIFGPPGLGKTTLANIVANELDVN 87

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            ++TSGPV+ KAGDLAALLTNL+  DVLFIDEIHRLS +VEEILYPAMED+QLD+M+GEG
Sbjct: 88  IKTTSGPVLEKAGDLAALLTNLDAHDVLFIDEIHRLSPVVEEILYPAMEDYQLDIMIGEG 147

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  RL FY++E+L  I++R A    +
Sbjct: 148 PAARSIKLDLPPFTLIGATTRAGALTSPLRDRFGIVQRLEFYQVEELTEIIKRSAHYMNV 207

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +    A EIA RSRGTPRIA RLLRRVRD+AEV     + +++A AAL  + +D+ GFD
Sbjct: 208 NMDVGGAQEIARRSRGTPRIANRLLRRVRDYAEVKADGKVNQDVASAALTMVDVDQAGFD 267

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRG 316
            +D + L  I   F GGPVG++ ++A + E +D IED++EPY+IQQGF+QRTPRG
Sbjct: 268 YMDRKLLLAIMEKFLGGPVGLDNLAAAIGEEKDTIEDVLEPYLIQQGFLQRTPRG 322


>gi|167043583|gb|ABZ08278.1| putative Holliday junction DNA helicase ruvB C-terminal domain
           [uncultured marine microorganism HF4000_APKG2K17]
          Length = 354

 Score =  367 bits (943), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 179/311 (57%), Positives = 233/311 (74%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L+++ GQ E   NL VFI AA  R  ALDHVL  GPPGLGKTTLA + ARE+ V 
Sbjct: 36  LRPQRLQDYIGQNEIKENLHVFIGAAIKRGHALDHVLLSGPPGLGKTTLANIFAREMEVQ 95

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            RSTSGPVI + GDLAA+LTNL+   +LFIDEIHRL+ +VEE+LY AMEDF LD+++GEG
Sbjct: 96  LRSTSGPVIERQGDLAAILTNLDPGSILFIDEIHRLNRVVEEVLYGAMEDFTLDIIIGEG 155

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P AR+VKI+L  FTL+ ATTR GLL++PL++RFGI  RLNFY+ EDLKTI+ R A L G+
Sbjct: 156 PGARTVKIDLPHFTLVGATTRAGLLSSPLRERFGIQFRLNFYDAEDLKTIILRAASLLGI 215

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + +EA+ E+A R+RGTPRIA RLL+R RDFA++  +  IT  + + +L R+ ID  G D
Sbjct: 216 EIVEEASLELARRARGTPRIANRLLKRCRDFADMETSGVITLPLVERSLERMRIDLEGLD 275

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           Q+D   L  I + FGGGPVG+ T+SA +S+ +D IED+ EP+++ +GF+QRTPRGR+   
Sbjct: 276 QMDRHILETIIKKFGGGPVGLSTLSAAVSDEKDTIEDVYEPFLLLKGFLQRTPRGRVATE 335

Query: 322 IAWQHLGIDIP 332
            A+QHL I  P
Sbjct: 336 RAYQHLEISAP 346


>gi|239827858|ref|YP_002950482.1| Holliday junction DNA helicase RuvB [Geobacillus sp. WCH70]
 gi|259495669|sp|C5D5E8|RUVB_GEOSW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|239808151|gb|ACS25216.1| Holliday junction DNA helicase RuvB [Geobacillus sp. WCH70]
          Length = 333

 Score =  367 bits (943), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 187/329 (56%), Positives = 243/329 (73%), Gaps = 1/329 (0%)

Query: 5   EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E L+S +V +ED  +   LRP+ L E+ GQ +   NLKVFIEAAK R E LDHVL  GPP
Sbjct: 3   ERLVSGDVHREDVSLEYSLRPKFLHEYIGQDKVKDNLKVFIEAAKMREETLDHVLLYGPP 62

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++A E+GV+ R+TSGP I + GDLAA+LT+LE  DVLFIDEIHRL   VEE
Sbjct: 63  GLGKTTLAAIIANEMGVHLRTTSGPAIERPGDLAAILTSLEPGDVLFIDEIHRLHRSVEE 122

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LYPAMED+ LD+++G+G +ARS++I+L  FTL+ ATTR G L+ PL+DRFG+  RL +Y
Sbjct: 123 VLYPAMEDYCLDIIIGKGQTARSIRIDLPPFTLVGATTRAGALSAPLRDRFGVISRLEYY 182

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
             E L  IV R A++  + +T EAA EIA RSRGTPRIA RLLRRVRDFA+V    TIT 
Sbjct: 183 TTEHLTQIVMRTAEILHVDITAEAAVEIARRSRGTPRIANRLLRRVRDFAQVRGDGTITF 242

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
            +A  AL  L +D++G D +D + +  I   FGGGPVGI+TI+A + E    IED+ EPY
Sbjct: 243 LLAKEALELLQVDRLGLDHIDHKLIKAIMEKFGGGPVGIDTIAATIGEEAQTIEDVYEPY 302

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++Q GF+QRTPRGR++ PIA++H G+++P
Sbjct: 303 LLQIGFLQRTPRGRIVTPIAYEHFGMEVP 331


>gi|332977851|gb|EGK14604.1| crossover junction ATP-dependent DNA helicase RuvB [Desmospora sp.
           8437]
          Length = 332

 Score =  367 bits (943), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 178/329 (54%), Positives = 242/329 (73%), Gaps = 1/329 (0%)

Query: 5   EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E ++S + S ED  +   LRPR L+++ GQ     NLKV+IEAAK R + LDHVL  GPP
Sbjct: 3   ERMISSHFSAEDEPMEFSLRPRYLDDYIGQTRVKENLKVYIEAAKMRRDPLDHVLLYGPP 62

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTL+ ++A E+GV  R+TSGP I + GDLAA+LTNL+  D+LFIDEIHRL+  VEE
Sbjct: 63  GLGKTTLSHIIANEMGVQVRTTSGPAIERPGDLAAILTNLQQGDLLFIDEIHRLNRSVEE 122

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTR G L++PL+DRFG+  RL  Y
Sbjct: 123 VLYPAMEDFALDIVIGKGPSARSVRLDLPPFTLVGATTRAGSLSSPLRDRFGVVSRLEHY 182

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
             E+L  IV R A L G+++ ++ A EIA R+RGTPR++ RLL+RVRDF +V     IT 
Sbjct: 183 TTEELSLIVMRAADLLGVSIREDGAEEIACRARGTPRVSNRLLKRVRDFVQVQGDGVITG 242

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           E A  AL R+ +D++G D++D + L  I  +F GGPVG+ETI+A + E    +ED+ EPY
Sbjct: 243 EAARDALDRIQVDRLGLDEVDHKLLKTIITHFRGGPVGLETIAATIGEEAHTVEDVYEPY 302

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++Q GF+QRTPRGR+L P  +QH G+++P
Sbjct: 303 LMQIGFLQRTPRGRMLTPRCYQHFGVELP 331


>gi|254490163|ref|ZP_05103354.1| Holliday junction DNA helicase RuvB [Methylophaga thiooxidans
           DMS010]
 gi|224464649|gb|EEF80907.1| Holliday junction DNA helicase RuvB [Methylophaga thiooxydans
           DMS010]
          Length = 337

 Score =  367 bits (942), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 179/308 (58%), Positives = 228/308 (74%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP TL+++ GQ      +++F+ AA+ R+EALDH L  GPPGLGKTTLA ++A E+GVN
Sbjct: 21  IRPITLDDYIGQPVVREQMELFVSAARKRSEALDHTLIFGPPGLGKTTLANIIANEMGVN 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGPV+ + GDLAALLTNLE  DVLF+DEIHRLS +VEE+LYPAMED+Q+D+M+GEG
Sbjct: 81  LKQTSGPVLERPGDLAALLTNLEPNDVLFVDEIHRLSPVVEEVLYPAMEDYQIDIMIGEG 140

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+K++L  FTL+ ATTR G LT+PL+DRFGI  RL FY   DL TIVQR A +  +
Sbjct: 141 PAARSIKLDLEPFTLVGATTRAGSLTSPLRDRFGIVQRLEFYNTADLSTIVQRSAGILNV 200

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +    A EIA RSRGTPRIA RLLRRVRD+AEV     ++ EIA  AL  L +D  GFD
Sbjct: 201 KLEQGGANEIARRSRGTPRIANRLLRRVRDYAEVKFDGEVSAEIARQALDLLDVDNYGFD 260

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            LD + L  I   F GGPVG++ ++A + E R  IED+IEP++IQ+GFI RTPRGR+   
Sbjct: 261 MLDRKLLLSIIEKFEGGPVGLDNLAAAIGEERGTIEDVIEPFLIQEGFIMRTPRGRVATK 320

Query: 322 IAWQHLGI 329
            AW HLG+
Sbjct: 321 RAWIHLGL 328


>gi|167041791|gb|ABZ06533.1| putative Holliday junction DNA helicase ruvB C-terminal domain
           [uncultured marine microorganism HF4000_093M11]
          Length = 354

 Score =  367 bits (942), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 179/313 (57%), Positives = 233/313 (74%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP  L ++ GQ E   NL V+I AAK R  ALDHVL  GPPGLGKTTLA + +RE+ V 
Sbjct: 36  LRPERLRDYIGQKEIKENLVVYIGAAKKRGHALDHVLLSGPPGLGKTTLANIFSREMEVP 95

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R+TSGPVI + GDLAA+LTNLE   + FIDEIHRL+ +VEE+LY AMEDF LD+++GEG
Sbjct: 96  LRATSGPVIERQGDLAAILTNLEPGTIFFIDEIHRLNRVVEEVLYGAMEDFTLDIIIGEG 155

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P AR+VKI+L  FTL+ ATTR GLLT+PL++RFGI  RLNFY+ E+LKTI+ R A L G+
Sbjct: 156 PGARTVKIDLPHFTLVGATTRAGLLTSPLRERFGIQFRLNFYDPEELKTIILRAASLLGI 215

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + +EA+ E+A R+RGTPRIA RLL+R RDFA++  +  IT  +   +L ++ ID  G D
Sbjct: 216 EIVEEASLELARRARGTPRIANRLLKRCRDFADMETSGVITLPLVVRSLEKMRIDLEGLD 275

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           Q+D   L  I   FGGGPVG+ T++A +SE +D IED+ EP+++ +GF+QRTPRGR+   
Sbjct: 276 QMDRLILEAIIEKFGGGPVGLSTLAASVSEEKDTIEDVYEPFLLVKGFLQRTPRGRMATE 335

Query: 322 IAWQHLGIDIPHR 334
            A+QHLGI IPH+
Sbjct: 336 RAYQHLGISIPHK 348


>gi|312110087|ref|YP_003988403.1| Holliday junction DNA helicase RuvB [Geobacillus sp. Y4.1MC1]
 gi|311215188|gb|ADP73792.1| Holliday junction DNA helicase RuvB [Geobacillus sp. Y4.1MC1]
          Length = 334

 Score =  367 bits (942), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 184/329 (55%), Positives = 242/329 (73%), Gaps = 1/329 (0%)

Query: 5   EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E L+S +V +ED  +   LRP+ L E+ GQ +   NLKVFIEAAK R E LDHVL  GPP
Sbjct: 3   ERLVSGDVHREDISLEYSLRPKFLHEYIGQDKVKDNLKVFIEAAKMREETLDHVLLYGPP 62

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++A E+GV+ R+TSGP I + GDLAA+LT+LE  DVLFIDEIHRL   VEE
Sbjct: 63  GLGKTTLAGIIANEMGVHLRTTSGPAIERPGDLAAILTSLEPGDVLFIDEIHRLHRSVEE 122

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LYPAMED+ LD+++G+G +ARS++I+L  FTL+ ATTR G L+ PL+DRFG+  RL +Y
Sbjct: 123 VLYPAMEDYCLDIVIGKGQTARSIRIDLPPFTLVGATTRAGALSAPLRDRFGVISRLEYY 182

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           + E L  IV R A++  + +  EAA EIA RSRGTPRIA RLLRRVRDFA+V    TIT 
Sbjct: 183 QPEHLTQIVMRTAEILHVDIKAEAALEIARRSRGTPRIANRLLRRVRDFAQVRGDGTITF 242

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
            +A  AL  L +D++G D +D + +  I   F GGPVGI+TI+A + E    IED+ EPY
Sbjct: 243 SLAKEALELLQVDRLGLDHIDHKLIEAIIEKFNGGPVGIDTIAATIGEEAQTIEDVYEPY 302

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++Q GF+QRTPRGR++ P A++H+G+++P
Sbjct: 303 LLQIGFLQRTPRGRMVTPAAYKHVGMEVP 331


>gi|78357365|ref|YP_388814.1| Holliday junction DNA helicase RuvB [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|97190034|sp|Q30YX7|RUVB_DESDG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|78219770|gb|ABB39119.1| Holliday junction DNA helicase subunit RuvB [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 321

 Score =  367 bits (942), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 173/318 (54%), Positives = 244/318 (76%), Gaps = 1/318 (0%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           + QE  D S+ RPRTL++F GQ +  +NL+V+++AA+ R +A+DH LF G PGLGKTTLA
Sbjct: 3   MEQECVDDSI-RPRTLDDFIGQEDLRANLRVYLQAARGRGQAMDHTLFYGNPGLGKTTLA 61

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
           Q++A E+GVN   TSGPV+ ++GDLAA+LTNL   D+LF+DEIHR+ + VEE+LYPAMED
Sbjct: 62  QIMASEMGVNMVCTSGPVLERSGDLAAILTNLGKGDLLFVDEIHRMPVAVEEVLYPAMED 121

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F+LDL++G+GP AR+VKI+L  FTL+ ATTR+GLL++PL+DRFGI  RL FY   +L  I
Sbjct: 122 FKLDLVIGQGPGARTVKIDLEPFTLVGATTRIGLLSSPLRDRFGIISRLEFYTPAELACI 181

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           V+R A + G+++T++ A EI  RSRGTPRIA RLLRRVRDFA V ++  +T  +A  AL 
Sbjct: 182 VKRTAGIMGVSLTEDGAVEIGRRSRGTPRIANRLLRRVRDFASVQNSAAVTAALASDALA 241

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
           R+ +D++G DQ+D + L+++  +F GGPVG++T++   SE    IED+ EPY+IQ GF++
Sbjct: 242 RMDVDELGLDQMDRKLLSVLIEHFAGGPVGVKTLAVACSEEVRTIEDIYEPYLIQCGFLK 301

Query: 312 RTPRGRLLMPIAWQHLGI 329
           RTPRGR+    A++H+ +
Sbjct: 302 RTPRGRMATAKAYRHMNL 319


>gi|295399353|ref|ZP_06809335.1| Holliday junction DNA helicase RuvB [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294978819|gb|EFG54415.1| Holliday junction DNA helicase RuvB [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 334

 Score =  367 bits (941), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 184/329 (55%), Positives = 242/329 (73%), Gaps = 1/329 (0%)

Query: 5   EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E L+S +V +ED  +   LRP+ L E+ GQ +   NLKVFIEAAK R E LDHVL  GPP
Sbjct: 3   ERLVSGDVHREDISLEYSLRPKFLHEYIGQDKVKDNLKVFIEAAKMREETLDHVLLYGPP 62

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++A E+GV+ R+TSGP I + GDLAA+LT+LE  DVLFIDEIHRL   VEE
Sbjct: 63  GLGKTTLAGIIANEMGVHLRTTSGPAIERPGDLAAILTSLEPGDVLFIDEIHRLHRSVEE 122

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LYPAMED+ LD+++G+G +ARS++I+L  FTL+ ATTR G L+ PL+DRFG+  RL +Y
Sbjct: 123 VLYPAMEDYCLDIVIGKGQTARSIRIDLPPFTLVGATTRAGALSAPLRDRFGVISRLEYY 182

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           + E L  IV R A++  + +  EAA EIA RSRGTPRIA RLLRRVRDFA+V    TIT 
Sbjct: 183 QPEHLTQIVMRTAEILHVDIKAEAALEIARRSRGTPRIANRLLRRVRDFAQVRGDGTITF 242

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
            +A  AL  L +D++G D +D + +  I   F GGPVGI+TI+A + E    IED+ EPY
Sbjct: 243 SLAKEALELLQVDRLGLDHIDHKLIEAIIEKFNGGPVGIDTIAATIGEEAQTIEDVYEPY 302

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++Q GF+QRTPRGR++ P A++H+G+++P
Sbjct: 303 LLQIGFLQRTPRGRIVTPAAYKHVGMEVP 331


>gi|258512077|ref|YP_003185511.1| Holliday junction DNA helicase RuvB [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478803|gb|ACV59122.1| Holliday junction DNA helicase RuvB [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 332

 Score =  367 bits (941), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 181/328 (55%), Positives = 243/328 (74%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           E L+S    +EDA +  +RPR L+++ GQ  A  NL++FI+AAK R E LDHVL  GPPG
Sbjct: 3   ERLISAEWMREDAQLDTIRPRFLDDYIGQRAAVENLRIFIQAAKERGEPLDHVLLYGPPG 62

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKT+LA ++A ELGV  R TSGP I +AGDLAA+LTNL+  DVLFIDEIHRLS  VEE+
Sbjct: 63  LGKTSLAMIIANELGVQIRVTSGPAIERAGDLAAILTNLQPGDVLFIDEIHRLSPSVEEV 122

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPAMEDF +D+++G+GPSARSV+++L  FTLI ATTR GLL++PL+DRFG+ + L++Y 
Sbjct: 123 LYPAMEDFAIDIVIGKGPSARSVRLDLPPFTLIGATTRAGLLSHPLRDRFGVMLHLDYYP 182

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           + DL  IV+R A++  L++T++   EIA R+RGTPRIA RLL+RVRD A+VA    I   
Sbjct: 183 VRDLAEIVKRNARILQLSITEDGCAEIARRARGTPRIANRLLKRVRDIAQVAGWPEIDAA 242

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
            A  AL +L +D +G D  D R L      FGGGPVG++T++A + E    +ED+ EPY+
Sbjct: 243 RAAEALAQLHVDPLGLDATDKRILEAAMDKFGGGPVGLDTLAAAVGEEPSTLEDVYEPYL 302

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           +Q GF++RTPRGR++MP A++HLG  +P
Sbjct: 303 LQIGFLKRTPRGRVVMPSAYRHLGRAVP 330


>gi|189485461|ref|YP_001956402.1| Holliday junction resolvasome helicase subunit RuvB [uncultured
           Termite group 1 bacterium phylotype Rs-D17]
 gi|170287420|dbj|BAG13941.1| Holliday junction resolvasome helicase subunit RuvB [uncultured
           Termite group 1 bacterium phylotype Rs-D17]
          Length = 340

 Score =  367 bits (941), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 179/321 (55%), Positives = 238/321 (74%), Gaps = 1/321 (0%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +++E+   + LRP+ L++F GQ +  +NLK+FIEAAK R EALDH LF  P GLGKTTL+
Sbjct: 13  LTEENRIENSLRPQILDDFIGQDKLKNNLKIFIEAAKKRHEALDHCLFYAPHGLGKTTLS 72

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            ++A+E+G N R TSGPV+ + GDLAA+LTNL D DV FIDEIHR++  VEE LYP MED
Sbjct: 73  HIIAKEMGCNLRITSGPVLERVGDLAAILTNLSDGDVFFIDEIHRMNHFVEESLYPVMED 132

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F+LD+++G+GPSAR++K+ + RFTLI ATTR GLL++PL+DRFGI   L+FY I++L+ I
Sbjct: 133 FELDIIIGQGPSARTIKLPVPRFTLIGATTRAGLLSSPLRDRFGIIEHLDFYAIKELEHI 192

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           V R A +  + V ++A  EIA RSRGTPRI  RLL+RVRDFAEV   K IT  IA  AL 
Sbjct: 193 VNRSAAIMNIGVDEDAGKEIARRSRGTPRIVNRLLKRVRDFAEVRGGK-ITHAIAKGALN 251

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L +D  G D++D   LT++   FGGGPVGI+TI+  ++E  D I D+ EPY+IQ GF+ 
Sbjct: 252 ALEVDSAGLDKIDRLILTVLIEKFGGGPVGIDTIATAVAEESDTITDVYEPYLIQSGFVA 311

Query: 312 RTPRGRLLMPIAWQHLGIDIP 332
           RTPRGR++    ++H+GID P
Sbjct: 312 RTPRGRVVTSDGYKHIGIDPP 332


>gi|134299519|ref|YP_001113015.1| Holliday junction DNA helicase RuvB [Desulfotomaculum reducens
           MI-1]
 gi|172044285|sp|A4J537|RUVB_DESRM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|134052219|gb|ABO50190.1| Holliday junction DNA helicase subunit RuvB [Desulfotomaculum
           reducens MI-1]
          Length = 344

 Score =  367 bits (941), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 183/330 (55%), Positives = 236/330 (71%), Gaps = 3/330 (0%)

Query: 1   MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M DR  L+S     ED D+ L LRPR L E+ GQ +A   + +F+EAA+ R E LDHVL 
Sbjct: 1   MSDR--LISATAQSEDNDLELSLRPRRLSEYIGQQKAKETISIFVEAARQRGEPLDHVLL 58

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTL+ ++A E+ VN R+TSGP I + GDLAA+LTNL   DVLFIDEIHRLS 
Sbjct: 59  FGPPGLGKTTLSNIIANEMAVNIRTTSGPAIERQGDLAAILTNLAPGDVLFIDEIHRLSK 118

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEEILYPAMEDF LD+++G+GP ARS++++L +FTLI ATTR G+L +PL+DRFGI  R
Sbjct: 119 AVEEILYPAMEDFALDIVLGKGPGARSIRLDLPKFTLIGATTRAGMLASPLRDRFGIISR 178

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY  EDL  IV R A +  + +    A EIA RSRGTPR+A RLL+RVRD+A+V    
Sbjct: 179 LEFYNNEDLTRIVTRAADILKVVIDRSGAEEIARRSRGTPRVANRLLKRVRDYAQVRAQG 238

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT ++A  AL    +D +G D  D R L+ I   F GGPVG++TI+A +SE  D +ED+
Sbjct: 239 DITADVAAEALEFFEVDPLGLDHTDRRLLSSIIEKFNGGPVGLDTIAAAISEETDTVEDV 298

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           +EP+++Q G I RTPRGR++ P A++HLGI
Sbjct: 299 LEPFLMQMGLITRTPRGRVVTPQAYKHLGI 328


>gi|229918407|ref|YP_002887053.1| Holliday junction DNA helicase RuvB [Exiguobacterium sp. AT1b]
 gi|259495666|sp|C4L523|RUVB_EXISA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|229469836|gb|ACQ71608.1| Holliday junction DNA helicase RuvB [Exiguobacterium sp. AT1b]
          Length = 333

 Score =  367 bits (941), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 183/327 (55%), Positives = 241/327 (73%), Gaps = 1/327 (0%)

Query: 5   EGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E LLS++  Q ED++   LRP+  E++ GQ +A  NL VFI+AAK R+E LDHVL  GPP
Sbjct: 3   ERLLSQSHQQYEDSEEWSLRPQRFEQYIGQEKAKGNLSVFIQAAKLRSETLDHVLLYGPP 62

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLAQ++A E+GV  ++T+GP I + GDLAA+L+ LE  DVLFIDEIHRLS  +EE
Sbjct: 63  GLGKTTLAQIIANEMGVGIKTTAGPAIERPGDLAAILSTLEPGDVLFIDEIHRLSRTIEE 122

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILYPAMED+ LD++ G+G  ARSV+I+L  FTL+ ATTR G+L+ PL+DRFG+ ++L +Y
Sbjct: 123 ILYPAMEDYCLDIVYGQGEMARSVRIDLPPFTLVGATTRAGMLSAPLRDRFGVTLKLEYY 182

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           E  +L  IV R A+L  L+++ EA+  IA RSRGTPRIA RLLRRVRDFA+VA  K I  
Sbjct: 183 ETHELAAIVSRTAQLFRLSISPEASGAIAKRSRGTPRIANRLLRRVRDFAQVAGTKEIDP 242

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
            +A  AL RL +D +G D++D R L  +   FGGGPVG+ET++A + E    IED+ EPY
Sbjct: 243 VLASDALDRLHVDALGLDEVDHRLLRAMVERFGGGPVGLETLAATIGEDAQTIEDVYEPY 302

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGID 330
           ++QQGF+QRTPRGR++   A  H G +
Sbjct: 303 LLQQGFLQRTPRGRMITQFAKSHFGYE 329


>gi|212638556|ref|YP_002315076.1| Holliday junction resolvasome, helicase subunit RuvB [Anoxybacillus
           flavithermus WK1]
 gi|212560036|gb|ACJ33091.1| Holliday junction resolvasome, helicase subunit RuvB [Anoxybacillus
           flavithermus WK1]
          Length = 335

 Score =  367 bits (941), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 184/330 (55%), Positives = 239/330 (72%), Gaps = 1/330 (0%)

Query: 2   MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M  E L+S     +DA +   LRP+ L E+ GQ +   NL VFIEAAK R E LDHVL  
Sbjct: 1   MMEERLISSAADYDDASLEYSLRPKQLREYIGQQKVKENLTVFIEAAKMRGETLDHVLLY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A E+GV  R+T+GP I + GDLAA+LT LE  DVLFIDEIHRL   
Sbjct: 61  GPPGLGKTTLAAIIANEMGVQLRTTAGPAIERPGDLAAILTTLEPGDVLFIDEIHRLPRA 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDF LD+++G+GP+ARSV+++L  FTL+ ATTR G L+ PL+DRFG+  RL
Sbjct: 121 VEEVLYPAMEDFCLDIVIGKGPAARSVRLDLPPFTLVGATTRSGALSAPLRDRFGVLSRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y  E+L  IV+R A +  + + +EAA EIA RSRGTPRIA RLLRRVRDFA+V    T
Sbjct: 181 EYYTSEELAHIVKRTAHIFAVQIEEEAAFEIARRSRGTPRIANRLLRRVRDFAQVRGDGT 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           IT  +A+ AL +L +D++G D LD + L  +   F GGPVG+ETI+A + E    IED+ 
Sbjct: 241 ITFLLANEALEQLQVDRLGLDHLDHKLLKSMMEKFRGGPVGLETIAATIGEEAQTIEDVY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           EPY++Q GF+QRTPRGR++ P+A+ H G++
Sbjct: 301 EPYLLQIGFLQRTPRGRIVTPLAYHHFGME 330


>gi|99035954|ref|ZP_01314999.1| hypothetical protein Wendoof_01000160 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 326

 Score =  367 bits (941), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 179/308 (58%), Positives = 236/308 (76%), Gaps = 2/308 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  L++F GQ +   NLKVFI AA+ R EALDHVL  GPPGLGKTTLAQ+V++EL V+
Sbjct: 19  IRPEQLDDFVGQKDLIQNLKVFINAAQTRTEALDHVLLYGPPGLGKTTLAQIVSKELRVS 78

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           FR+TSGP+++KAGDLAA+LT L  +DVLFIDEIHRL+  +EE+LY AMEDF LD++VGEG
Sbjct: 79  FRATSGPLLSKAGDLAAVLTTLNAKDVLFIDEIHRLNRSIEEVLYTAMEDFCLDILVGEG 138

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PS R+++I+L  FTLI ATT++GLL+ PL+DRFGIP+ L FY  E+L  I++RGA++   
Sbjct: 139 PSTRTLRIDLPPFTLIGATTQLGLLSAPLRDRFGIPLHLEFYSFEELVNIIKRGARVLSA 198

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + ++AA EIA R+RGTPRIA RLLRR+RDF EV   K IT E+AD+ LL+L +DKMG +
Sbjct: 199 EIEEDAAREIACRARGTPRIALRLLRRIRDFVEVKDDKKITYEVADSVLLKLGVDKMGLN 258

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           +LD+ YL  +      GPVGI+TIS  LSE    IE+ +EPY+I+  F++RTPRGR+L  
Sbjct: 259 KLDMNYLRFLFNT--SGPVGIDTISIALSEDVGNIEETVEPYLIKISFVKRTPRGRVLTD 316

Query: 322 IAWQHLGI 329
            A ++L  
Sbjct: 317 QAKEYLSF 324


>gi|85858587|ref|YP_460789.1| Holliday junction DNA helicase RuvB [Syntrophus aciditrophicus SB]
 gi|97190384|sp|Q2LRA8|RUVB_SYNAS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|85721678|gb|ABC76621.1| holliday junction DNA helicase [Syntrophus aciditrophicus SB]
          Length = 340

 Score =  367 bits (941), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 177/328 (53%), Positives = 237/328 (72%), Gaps = 1/328 (0%)

Query: 2   MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M R+ L+S      D    + LRP +++E+ GQ +    L +F+EAA+ R EALDHVL  
Sbjct: 1   MKRDDLVSPECMDGDNVYETTLRPHSIKEYVGQKKIKKTLPIFVEAAQKRKEALDHVLLY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++ARE+G N + TSGPVI + GDLAA+LTNL+D D+LFIDEIHRL   
Sbjct: 61  GPPGLGKTTLALIIAREMGFNIKVTSGPVIERPGDLAAILTNLKDYDILFIDEIHRLPHS 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILYPAMEDF +D+++G+GPSARS+K+++ +FTL+ ATTR GLLT+PL+DRFGI  RL
Sbjct: 121 VEEILYPAMEDFYIDIVIGQGPSARSMKLDIPKFTLVGATTRAGLLTSPLRDRFGISFRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           ++Y +E+L  I+ R A +  + +    A EIA RSRGTPRIA RLL+RVRD+A+V     
Sbjct: 181 DYYAVEELTKIINRSASIMSIEIEHSGALEIAKRSRGTPRIANRLLKRVRDYAQVKGEGI 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I R +A  AL  L ID  GFDQ+D   L  I  N+GGGPVGI+T+ A + E +  IED+ 
Sbjct: 241 IKRAVAVHALEMLEIDDRGFDQMDRSILLSIIENYGGGPVGIDTLCATVGEEKTTIEDVY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
           EPY+I++G++Q+T RGR+    A++H G
Sbjct: 301 EPYLIKEGYLQKTARGRIATKKAYEHFG 328


>gi|167629899|ref|YP_001680398.1| holliday junction DNA helicase ruvb [Heliobacterium modesticaldum
           Ice1]
 gi|238687888|sp|B0TF70|RUVB_HELMI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|167592639|gb|ABZ84387.1| holliday junction DNA helicase ruvb [Heliobacterium modesticaldum
           Ice1]
          Length = 370

 Score =  366 bits (940), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 179/311 (57%), Positives = 231/311 (74%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPRTL E+ GQ +   NL VFI+AA  R E LDHVL  GPPGLGKTTLAQ++A+ELGV 
Sbjct: 21  LRPRTLREYIGQDKLKENLTVFIQAALGRREPLDHVLLYGPPGLGKTTLAQIIAQELGVQ 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGP I + GDLAA+LTNL+  DVLFIDEIHRL+  VEE+LYPAMEDF LD+++G+G
Sbjct: 81  LRVTSGPAIERPGDLAAILTNLQPMDVLFIDEIHRLNRAVEEVLYPAMEDFCLDIVIGKG 140

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS++I+L RFTL+ ATTR G+LT+PL+DRFG+  RL +Y  ++L+ I+ R A + G+
Sbjct: 141 PAARSIRIDLPRFTLVGATTRAGMLTSPLRDRFGVIHRLEYYRPDELEFIILRAATILGV 200

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
               E A EIA+RSRGTPRIA RLL+RVRD+A+V     +T E+A  AL RL +D  G D
Sbjct: 201 TAEPEGAREIALRSRGTPRIANRLLKRVRDYAQVLSDGVVTGEVAREALRRLEVDPRGLD 260

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             D R L  + R F GGPVG+ET++A + E  D +ED++EPY++Q GF+ RTPRGR+   
Sbjct: 261 TTDQRLLEALIRKFAGGPVGVETLAASVGESVDTVEDVVEPYLMQLGFLNRTPRGRMATI 320

Query: 322 IAWQHLGIDIP 332
            A  HLG+ +P
Sbjct: 321 AACAHLGVPVP 331


>gi|147677362|ref|YP_001211577.1| Holliday junction DNA helicase RuvB [Pelotomaculum
           thermopropionicum SI]
 gi|189046040|sp|A5D3G1|RUVB_PELTS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|146273459|dbj|BAF59208.1| holliday junction resolvasome, helicase subunit [Pelotomaculum
           thermopropionicum SI]
          Length = 341

 Score =  366 bits (939), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 183/331 (55%), Positives = 242/331 (73%), Gaps = 3/331 (0%)

Query: 1   MMDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M DR  L+S     EDAD+ + LRPR L E+ GQ +    + VFI+AA+ R E LDHVL 
Sbjct: 1   MKDR--LISAVARPEDADVDTSLRPRLLAEYIGQEKVKETISVFIQAARGRGEPLDHVLL 58

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A E+GV+ R+TSGP + + GDLAA+LT+L   D+LFIDEIHRLS 
Sbjct: 59  FGPPGLGKTTLANIIANEMGVSIRTTSGPAVERPGDLAAILTSLSQGDILFIDEIHRLSR 118

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEE+LYPAMED+ LD+++G+GP ARS+++ L RFTL+ ATTR GLLT+PL+DRFG+  R
Sbjct: 119 TVEEVLYPAMEDYALDIVIGKGPGARSLRLELPRFTLVGATTRAGLLTSPLRDRFGVISR 178

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y  EDL  IV R A++ G+ +T E A EIA RSRGTPR+A RLL+RVRD+A+V    
Sbjct: 179 LEYYRPEDLVLIVNRSARILGIEITAEGAFEIARRSRGTPRVANRLLKRVRDYAQVRANG 238

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT E+A  AL  L +D +G D  D R L  I + FGGGPVG+ETI+  ++E  + +ED+
Sbjct: 239 VITCEVAVEALKFLEVDPLGLDFADRRLLLTIIQKFGGGPVGLETIATAVNEEPETVEDV 298

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
            EPY+IQ G + RTPRGR+  P+A++HLG++
Sbjct: 299 YEPYLIQLGMLARTPRGRVTTPLAFRHLGLE 329


>gi|291563158|emb|CBL41974.1| Holliday junction DNA helicase, RuvB subunit [butyrate-producing
           bacterium SS3/4]
          Length = 332

 Score =  365 bits (938), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 177/325 (54%), Positives = 242/325 (74%), Gaps = 1/325 (0%)

Query: 7   LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           +++   ++ED  I   LRP+ L+++ GQ +  S LK+FI+AAK+R EALDHVLF GPPGL
Sbjct: 5   IITTEETEEDKKIEGTLRPQYLKDYIGQEKIKSTLKIFIDAAKSRGEALDHVLFYGPPGL 64

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTL  ++A E+GVN + TSGP I K G++AA+L NL++ DVLF+DEIHRL+  VEE+L
Sbjct: 65  GKTTLCGIIANEMGVNLKVTSGPAIEKPGEMAAILNNLQEGDVLFVDEIHRLNRQVEEVL 124

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           YPAMEDF +D+M+G+  SARS++++L +FTL+ ATTRVGLLT PL+DRFG+  RL FY  
Sbjct: 125 YPAMEDFAIDIMLGKDSSARSIRLDLPKFTLVGATTRVGLLTAPLRDRFGVIQRLEFYTP 184

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           E+L  IV+R AK+ G+ + +E A EIA RSRGTPR+A RLL+RVRDFA+V +   ITR +
Sbjct: 185 EELCVIVKRSAKVLGVEIDEEGAFEIARRSRGTPRLANRLLKRVRDFAQVKYDGVITRHV 244

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           AD AL  L +DK+G D  D   L  + + F GGPVG+ET++A + E    +ED+ EPY++
Sbjct: 245 ADFALDILDVDKLGLDNNDRTLLLTLIQKFSGGPVGLETLAASIGEDSGTLEDVYEPYLL 304

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGID 330
             G I RTPRGR+   +A++HLG+D
Sbjct: 305 MNGLIMRTPRGRMATDLAYKHLGLD 329


>gi|163753882|ref|ZP_02161005.1| Holliday junction DNA helicase RuvB [Kordia algicida OT-1]
 gi|161326096|gb|EDP97422.1| Holliday junction DNA helicase RuvB [Kordia algicida OT-1]
          Length = 340

 Score =  365 bits (938), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 187/329 (56%), Positives = 239/329 (72%), Gaps = 1/329 (0%)

Query: 1   MMDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M D     ++N S E+ DI   LRP + E+FTGQ +   NL+VF++AA  R EALDH LF
Sbjct: 1   MNDNLDPTNQNYSPEENDIEKALRPLSFEDFTGQDQVLENLQVFVQAANLREEALDHTLF 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A EL V+ + TSGPV+ K GDLA LLTNL++RDVLFIDEIHRLS 
Sbjct: 61  HGPPGLGKTTLAHILASELDVSIKVTSGPVLDKPGDLAGLLTNLDERDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           IVEE LY AMED+++D+M+  GP+AR+V+INL+ FTL+ ATTR GLLT P++ RFGI  R
Sbjct: 121 IVEEYLYSAMEDYKIDIMIESGPNARTVQINLNPFTLVGATTRSGLLTAPMRARFGIASR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y  E L TIVQR A++  + ++ EAA EIA RSRGTPRIA  LLRRVRDFA++    
Sbjct: 181 LQYYSTELLSTIVQRSAQILNVPISMEAAIEIAGRSRGTPRIANALLRRVRDFAQIKGNG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           TI  EIA   L  L +D  G D++D R L+ I   F GGPVGI T++  +SE  + IE++
Sbjct: 241 TIDIEIARFGLKALNVDAYGLDEMDNRILSTIIDKFKGGPVGITTLATAVSESGETIEEV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
            EP++IQQGFI RTPRGR +  +A++HLG
Sbjct: 301 YEPFLIQQGFIIRTPRGREVTELAYKHLG 329


>gi|260587810|ref|ZP_05853723.1| holliday junction DNA helicase RuvB [Blautia hansenii DSM 20583]
 gi|260542075|gb|EEX22644.1| holliday junction DNA helicase RuvB [Blautia hansenii DSM 20583]
          Length = 329

 Score =  365 bits (938), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 173/308 (56%), Positives = 233/308 (75%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L ++ GQ +A  NLKV+IEAAK R +ALDHVLF GPPGLGKTTLA ++A ELGV+
Sbjct: 21  LRPQLLNDYIGQEKAKKNLKVYIEAAKQRGDALDHVLFYGPPGLGKTTLAGIIANELGVH 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGP I K G++AA+L NL++ DVLF+DEIHRL+  VEE+LYPAMED+ +D+M+G+G
Sbjct: 81  MKVTSGPAIEKPGEMAAILNNLQENDVLFVDEIHRLNRQVEEVLYPAMEDYAIDIMIGKG 140

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            +ARS++++L +FTL+ ATTR GLLT PL+DRFG+   L FY  E+L+TI+ R AK+ G+
Sbjct: 141 ATARSIRLDLPKFTLVGATTRAGLLTAPLRDRFGVVHHLEFYTEEELQTIIIRSAKVLGV 200

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + +  A E+A RSRGTPR+A RLL+RVRDFA+V +   IT+E+AD A+  L +D+ G D
Sbjct: 201 EIDEAGALEMAKRSRGTPRLANRLLKRVRDFAQVKYDGKITKEVADFAMDLLEVDRYGLD 260

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           Q D   LT I   F GGPVG++T+SA + E    IED+ EPY+I+ GF+ RTPRGR +  
Sbjct: 261 QTDRLLLTTIIERFSGGPVGLDTLSAAIGEDAGTIEDVYEPYLIKNGFLLRTPRGRTVTE 320

Query: 322 IAWQHLGI 329
           + + HLGI
Sbjct: 321 LTYHHLGI 328


>gi|197301662|ref|ZP_03166732.1| hypothetical protein RUMLAC_00388 [Ruminococcus lactaris ATCC
           29176]
 gi|197299102|gb|EDY33632.1| hypothetical protein RUMLAC_00388 [Ruminococcus lactaris ATCC
           29176]
          Length = 332

 Score =  365 bits (938), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 175/321 (54%), Positives = 237/321 (73%), Gaps = 1/321 (0%)

Query: 14  QEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           +ED  I   LRP+ L E+ GQ +A   L ++IEAAKAR EALDHVLF GPPGLGKTTLA 
Sbjct: 12  EEDIKIEGQLRPQHLTEYIGQEKAKKTLGIYIEAAKARGEALDHVLFYGPPGLGKTTLAG 71

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++A E+GVN + TSGP I K G++AA+L  L++ DVLF+DEIHRL+  VEE+LYPAMED+
Sbjct: 72  IIANEMGVNLKVTSGPAIEKPGEMAAILNGLQENDVLFVDEIHRLNRQVEEVLYPAMEDY 131

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            +D+M+G+GP ARSV++NL +FTL+ ATTR G+LT PL+DRFG+  RL FY   +L TI+
Sbjct: 132 AIDIMIGKGPGARSVRLNLPKFTLVGATTRAGMLTAPLRDRFGVVNRLEFYTDRELMTII 191

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R A++ G+ + +  A E+A RSRGTPR+A RLL+RVRDFA+V +   IT ++A+ AL  
Sbjct: 192 LRSARVLGVEIEESGAMELARRSRGTPRLANRLLKRVRDFAQVKYDGVITEKVANYALDL 251

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +DK G D +D   L  +   F GGPVG++T++A +SE    +ED+ EPY+++ GFIQR
Sbjct: 252 LDVDKYGLDHIDRSILLTMIEKFQGGPVGLDTLAASISEDAGTLEDVYEPYLLKNGFIQR 311

Query: 313 TPRGRLLMPIAWQHLGIDIPH 333
           TPRGR++  +A+ HLGI  P 
Sbjct: 312 TPRGRVVTALAYSHLGIPQPQ 332


>gi|119504259|ref|ZP_01626339.1| Isoleucyl-tRNA synthetase, class Ia [marine gamma proteobacterium
           HTCC2080]
 gi|119459767|gb|EAW40862.1| Isoleucyl-tRNA synthetase, class Ia [marine gamma proteobacterium
           HTCC2080]
          Length = 351

 Score =  365 bits (938), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 183/311 (58%), Positives = 236/311 (75%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ LE++ GQ      +++F+ AAK R E LDH L  GPPGLGKTTLA ++A E+GV 
Sbjct: 25  IRPKCLEDYLGQRVVREQMEIFLAAAKQRDEPLDHTLIFGPPGLGKTTLASIIAHEMGVA 84

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            ++TSGPV+ KAGD+AAL+TNLE  DVLFIDEIHRLS  VEEILYPAMED+QLD+M+GEG
Sbjct: 85  LKTTSGPVLEKAGDIAALMTNLEPGDVLFIDEIHRLSPYVEEILYPAMEDYQLDIMIGEG 144

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+K++L  FTL+ ATTR GLLT+PL+DRFGI  RL FYE++DL  IV R AKL  +
Sbjct: 145 PAARSIKLDLPPFTLVGATTRAGLLTSPLRDRFGIVQRLEFYEVDDLTKIVARSAKLLEI 204

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            V D  A E+A R+RGTPRIA RLLRRVRD+AEV     IT  +A  AL  L +D++G D
Sbjct: 205 PVDDAGAREMARRARGTPRIANRLLRRVRDYAEVKSDGRITERVAQQALDMLNVDQLGLD 264

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            LD R L M+   F GGPVG+++++A LSE R  +ED++EPY+IQQG++ RTPRGR++  
Sbjct: 265 HLDRRLLLMLIEKFEGGPVGVDSLAAALSEERGTLEDVLEPYLIQQGYLLRTPRGRIVTQ 324

Query: 322 IAWQHLGIDIP 332
            A++H GI +P
Sbjct: 325 AAYRHFGIQMP 335


>gi|323204055|gb|EFZ89070.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
          Length = 338

 Score =  365 bits (937), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 182/310 (58%), Positives = 235/310 (75%), Gaps = 1/310 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S   +  ED     +RP+ L E+ GQ +  S +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRLISAGATIAEDVADRAIRPKFLAEYVGQPQVRSQMEIFIQAAKLRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IV R A+  GL ++D+ A E+A R+RGTPRIA RLLRRVRDFAEV H  
Sbjct: 181 LEFYQVPDLQHIVGRSARHMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I+ EIA  AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 AISAEIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGF 309
           +EPY+IQQGF
Sbjct: 301 LEPYLIQQGF 310


>gi|297569178|ref|YP_003690522.1| Holliday junction DNA helicase RuvB [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296925093|gb|ADH85903.1| Holliday junction DNA helicase RuvB [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 363

 Score =  365 bits (937), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 180/307 (58%), Positives = 232/307 (75%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L ++ GQ +   NL++ I AAK R EALDH LF G PGLGKTTLA V+A E+G  
Sbjct: 22  LRPKLLNQYIGQEQVKENLEIAIAAAKGRGEALDHTLFHGFPGLGKTTLAYVIANEMGAG 81

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGPVI +AGDLAA+LT+L++ DVLFIDEIHRL+ +VEEILYPAMEDF+LDL++G+G
Sbjct: 82  IRVTSGPVIERAGDLAAILTSLQEGDVLFIDEIHRLNHVVEEILYPAMEDFELDLVIGQG 141

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P ARSVK++L RFTL+ ATTR GLLT PL+DRFG+ +RL+FY  E+L  IV+R A+L G+
Sbjct: 142 PGARSVKMSLPRFTLVGATTRTGLLTPPLRDRFGLSLRLDFYAPEELVAIVKRSAELLGV 201

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +    A EI  RSRGTPRIA RLLRR+RDFAEV     IT EIADAAL  L +D +GFD
Sbjct: 202 PIDQAGALEIGRRSRGTPRIANRLLRRLRDFAEVKGRGKITAEIADAALSMLGVDLLGFD 261

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           ++D R L  +   F GGP+G+ET++  + E ++ +ED+ EP++IQ GF+ RTPRGR+   
Sbjct: 262 EMDRRILLALIDRFQGGPIGLETLATMVCEEKNTLEDVYEPFLIQAGFLVRTPRGRMATR 321

Query: 322 IAWQHLG 328
            A++H G
Sbjct: 322 AAYEHFG 328


>gi|166031913|ref|ZP_02234742.1| hypothetical protein DORFOR_01614 [Dorea formicigenerans ATCC
           27755]
 gi|166028366|gb|EDR47123.1| hypothetical protein DORFOR_01614 [Dorea formicigenerans ATCC
           27755]
          Length = 335

 Score =  365 bits (937), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 180/329 (54%), Positives = 243/329 (73%), Gaps = 2/329 (0%)

Query: 2   MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M R  + + N+ +ED  I S LRP+ L+++ GQ +A   LKV+I AAK R E LDHVLF 
Sbjct: 1   MSRRIITTENL-EEDVKIESHLRPQLLDDYIGQEKAKEILKVYITAAKERGETLDHVLFY 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A E+ VN + TSGP I K G++AA+L NL++ DVLF+DEIHRL+  
Sbjct: 60  GPPGLGKTTLAGIIANEMHVNIKITSGPAIEKPGEMAAILNNLQEGDVLFVDEIHRLNRQ 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMED+ +D+M+G+G SARS++++L +FTL+ ATTRVG+LT PL+DRFG+  RL
Sbjct: 120 VEEVLYPAMEDYAIDIMIGKGASARSIRLDLPKFTLVGATTRVGMLTAPLRDRFGVIHRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY +E+LK I+ R AK+  + + D  A  +A RSRGTPR+A RLL+RVRDFA+V +   
Sbjct: 180 EFYTVEELKRIIARSAKVLDVGIDDAGATALARRSRGTPRLANRLLKRVRDFAQVKYDGY 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           IT ++A+ AL  L +DK G DQ D   L  I   F GGPVG++T++A LSE    IED+ 
Sbjct: 240 ITEDVANYALDLLDVDKCGLDQTDRNLLMTIIERFDGGPVGLDTLAASLSEDSGTIEDVY 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           EPY+++ GFIQRTPRGR++  +A+ HLGI
Sbjct: 300 EPYLLKNGFIQRTPRGRIVTDLAYAHLGI 328


>gi|317128203|ref|YP_004094485.1| Holliday junction DNA helicase RuvB [Bacillus cellulosilyticus DSM
           2522]
 gi|315473151|gb|ADU29754.1| Holliday junction DNA helicase RuvB [Bacillus cellulosilyticus DSM
           2522]
          Length = 334

 Score =  365 bits (937), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 181/334 (54%), Positives = 239/334 (71%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MMD   +   +  QED +   LRP+TL ++ GQ    +NL VFIEAAK R E LDHVL  
Sbjct: 1   MMDDRLVSGESNQQEDWEEHSLRPQTLTQYIGQENVKNNLNVFIEAAKMREETLDHVLLY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTL+ ++A E+ V  R+TSGP I + GDLAA+LT LE  DVLFIDEIHRL+  
Sbjct: 61  GPPGLGKTTLSMIIANEMNVQLRTTSGPAIERPGDLAAILTALEPGDVLFIDEIHRLNRS 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTR G+L+ PL+DRFG+  RL
Sbjct: 121 VEEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLSAPLRDRFGVVSRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y  E+L  IV+R A +  + +  EAA EIA RSRGTPRIA RLLRRVRDFA+V    T
Sbjct: 181 QYYTHEELTEIVERTALVMNVEIDHEAAIEIARRSRGTPRIANRLLRRVRDFAQVKGDNT 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I  ++   AL  L +DK+G D++D + L  I   F GGPVG++TI+A + E    IED+ 
Sbjct: 241 IKLDVTQHALQLLQVDKLGLDEIDHKLLRNIVEKFRGGPVGLDTIAATIGEESHTIEDVY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           EPY++Q GF+QRTPRGR++    ++HL +++P +
Sbjct: 301 EPYLLQIGFLQRTPRGRMVTDDVYKHLQMEVPRK 334


>gi|163814139|ref|ZP_02205531.1| hypothetical protein COPEUT_00293 [Coprococcus eutactus ATCC 27759]
 gi|158450588|gb|EDP27583.1| hypothetical protein COPEUT_00293 [Coprococcus eutactus ATCC 27759]
          Length = 333

 Score =  365 bits (937), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 172/309 (55%), Positives = 229/309 (74%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E+ GQ +   NL++FIEAAK R E LDH+L  GPPGLGKTTL+ +VA E+GVN
Sbjct: 21  LRPQYLNEYIGQEKVKDNLRIFIEAAKKRKEPLDHLLLYGPPGLGKTTLSTIVANEMGVN 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGP I K G+LAA+L NL D D+LFIDEIHRLS  VEE+LYPAMED+ +D+++G+G
Sbjct: 81  IKITSGPAIEKPGELAAILNNLSDNDILFIDEIHRLSTQVEEVLYPAMEDYAIDVVIGKG 140

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
             ARS++++L +FTLI ATTRVG+L+ PL+DRFG+  +L FY  EDLK I+ R A + G+
Sbjct: 141 AGARSIRLDLPKFTLIGATTRVGMLSAPLRDRFGMVDKLEFYSNEDLKEIIVRSADVLGV 200

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
           ++ DE A EIA RSRGTPR+A RLL+R RD+AEV H   I+R++A +AL +L +D MG D
Sbjct: 201 SLDDEGALEIARRSRGTPRLANRLLKRCRDYAEVCHDGCISRDVAKSALDKLQVDSMGLD 260

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             D   L  +   F GGPVG++T++A + E    IED+ EPY I  GFI RTPRGR++  
Sbjct: 261 VNDRNILLTMIEKFDGGPVGLDTLAAAVGEDPGTIEDVYEPYFIMNGFINRTPRGRVVTE 320

Query: 322 IAWQHLGID 330
           + ++HLG+D
Sbjct: 321 LCYRHLGLD 329


>gi|309791416|ref|ZP_07685923.1| Holliday junction DNA helicase B [Oscillochloris trichoides DG6]
 gi|308226549|gb|EFO80270.1| Holliday junction DNA helicase B [Oscillochloris trichoides DG6]
          Length = 343

 Score =  365 bits (937), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 186/333 (55%), Positives = 242/333 (72%), Gaps = 1/333 (0%)

Query: 2   MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M  E LL+ +   +D  +   LRPR L EF GQ +    LK+ I AAKARAE LDH LF 
Sbjct: 1   MAEERLLNPSADSDDQQVEKSLRPRNLAEFIGQEKTVDQLKIAITAAKARAEPLDHTLFY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKT+LA V+A+E+GV  + TSGP I +AGDLAA+LTNL+  DVLFIDE+HRL+  
Sbjct: 61  GPPGLGKTSLAGVIAQEMGVKIKITSGPAIERAGDLAAVLTNLQKDDVLFIDEVHRLNRA 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDF LDLMVG+GPSARS+++NL RFT++ ATTR+ LLT+PL+DRF    RL
Sbjct: 121 VEEVLYPAMEDFALDLMVGKGPSARSLRLNLPRFTVVGATTRLALLTSPLRDRFVSVHRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  E +  IV R A++ G+ +++E A EI  R+RGTPRIA RLLRRVRD+A+V     
Sbjct: 181 IFYSDEAMCEIVTRSARILGMPISNEGALEIGRRARGTPRIANRLLRRVRDYAQVIGDGV 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I   +A AAL +L +D +G D+ D R L  I   F GGPVG+ T++A L+E  DA+ED+ 
Sbjct: 241 IDVPVARAALAQLEVDDLGLDENDRRLLHAIIELFNGGPVGLSTLAAALAEEVDAVEDVY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EP+++Q GF+QRTPRGR+    A++HLGI +P+
Sbjct: 301 EPFLLQLGFLQRTPRGRIATRRAYEHLGIPVPN 333


>gi|190571379|ref|YP_001975737.1| Holliday junction DNA helicase RuvB [Wolbachia endosymbiont of
           Culex quinquefasciatus Pel]
 gi|213018778|ref|ZP_03334586.1| Holliday junction DNA helicase RuvB [Wolbachia endosymbiont of
           Culex quinquefasciatus JHB]
 gi|238058358|sp|B3CMH5|RUVB_WOLPP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|190357651|emb|CAQ55095.1| Holliday junction DNA helicase RuvB [Wolbachia endosymbiont of
           Culex quinquefasciatus Pel]
 gi|212995729|gb|EEB56369.1| Holliday junction DNA helicase RuvB [Wolbachia endosymbiont of
           Culex quinquefasciatus JHB]
          Length = 329

 Score =  365 bits (936), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 182/309 (58%), Positives = 236/309 (76%), Gaps = 2/309 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  L++F GQ +   NLKVFI AA+ RAEALDHVL  GPPGLGKTTLAQ+V++EL V+
Sbjct: 19  IRPEQLDDFVGQKDLIQNLKVFINAAQTRAEALDHVLLYGPPGLGKTTLAQIVSKELRVS 78

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           FR+TSGP+++KAGDLAA+LT L  +DVLFIDEIHRL+  +EE+LY AMEDF LD++VGEG
Sbjct: 79  FRATSGPLLSKAGDLAAVLTTLNAKDVLFIDEIHRLNRSIEEVLYTAMEDFCLDILVGEG 138

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PS R+++I+L  FTLI ATTR+GLL+ PL+DRFGIP+ L FY  E+L  I++RGA++   
Sbjct: 139 PSTRTLRIDLPPFTLIGATTRLGLLSAPLRDRFGIPLHLEFYSFEELVDIIKRGARVLCA 198

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  +A  EIA R+RGTPRIA RLLRR+RDF EV   K IT EIA +AL +L IDKMG +
Sbjct: 199 EIEKDAVQEIACRARGTPRIALRLLRRIRDFVEVKDDKKITCEIAGSALSKLGIDKMGLN 258

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           +LD+ YL  +      GPVGI+TIS  LSE    IE+ +EPY+I+  F++RTPRGR+L  
Sbjct: 259 KLDMDYLRFLFNT--SGPVGIDTISIALSEDVGNIEETVEPYLIKVSFVKRTPRGRVLTD 316

Query: 322 IAWQHLGID 330
            A ++L I+
Sbjct: 317 QAREYLSIN 325


>gi|320352804|ref|YP_004194143.1| Holliday junction DNA helicase RuvB [Desulfobulbus propionicus DSM
           2032]
 gi|320121306|gb|ADW16852.1| Holliday junction DNA helicase RuvB [Desulfobulbus propionicus DSM
           2032]
          Length = 355

 Score =  365 bits (936), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 176/306 (57%), Positives = 231/306 (75%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR LEE+ GQ +   +L+VFI+AA  R E LDHVLF G PGLGKTTLA ++A E+G  
Sbjct: 28  IRPRRLEEYIGQDQVKQSLRVFIQAALQRGEPLDHVLFHGFPGLGKTTLAYIIANEMGAG 87

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGPVI + GDLAA+LT+L+  DVLFIDEIHRL+ +VEEILYPAMEDFQLDL++G+G
Sbjct: 88  IKVTSGPVIERPGDLAAILTSLQAGDVLFIDEIHRLNHVVEEILYPAMEDFQLDLVIGQG 147

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P ARSVK++L RFTL+ ATTR GLLT PL+DRFG+ +RL +Y  E L TI+QR A+L  +
Sbjct: 148 PGARSVKMDLPRFTLVGATTRTGLLTPPLRDRFGVVLRLEYYSPEQLVTIIQRTARLFRI 207

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + ++ A E+  RSRGTPRIA RLLRRVRDF+EV   + +TRE+ADAAL  L +D +G D
Sbjct: 208 EIDEDGAMELGRRSRGTPRIANRLLRRVRDFSEVGGHRVVTREVADAALTMLNVDPLGLD 267

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           ++D R L  +   F GGP+G+ET+S  + E +  +ED+ EP++IQ GF+ RTPRGR+   
Sbjct: 268 EMDRRILLTLIEKFQGGPIGLETLSTAVCEEKTTLEDVYEPFLIQSGFLVRTPRGRMATA 327

Query: 322 IAWQHL 327
            A++H 
Sbjct: 328 AAYEHF 333


>gi|92113971|ref|YP_573899.1| Holliday junction DNA helicase B [Chromohalobacter salexigens DSM
           3043]
 gi|123387446|sp|Q1QWF8|RUVB_CHRSD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|91797061|gb|ABE59200.1| Holliday junction DNA helicase RuvB [Chromohalobacter salexigens
           DSM 3043]
          Length = 350

 Score =  365 bits (936), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 178/308 (57%), Positives = 229/308 (74%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR L E+ GQ      L +FI AA+ R ++LDH L  GPPGLGKTTLA ++A E+ V+
Sbjct: 23  IRPRRLAEYIGQPRVREQLDIFISAARKRGDSLDHTLVFGPPGLGKTTLANIIAAEMDVD 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            +STSGPV+ +AGDLAA+LTNL+  DVLFIDEIHRL   VEE+LYPAMED+QLD+M+GEG
Sbjct: 83  IKSTSGPVLERAGDLAAMLTNLQAGDVLFIDEIHRLPASVEEVLYPAMEDYQLDIMIGEG 142

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+K++L  FTL+ ATTR GLLT+PL+DRFGI  RL FY +E+L  IV R A L G+
Sbjct: 143 PAARSIKLDLPAFTLVGATTRAGLLTSPLRDRFGIVQRLEFYAVEELTEIVVRSAHLLGV 202

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
               + A EIA R+RGTPRIA RLLRRVRDFAEV     +T  IAD AL  L +D+ G D
Sbjct: 203 DAERDGAAEIARRARGTPRIANRLLRRVRDFAEVRGDGRLTAAIADQALNMLHVDRHGLD 262

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D R L  +   F GGPVG+++++A +SE RD IED++EPY+IQQGF+ RT RGR++  
Sbjct: 263 HMDRRLLMAMIEKFDGGPVGVDSLAAAISEERDTIEDVLEPYLIQQGFMMRTARGRVVTR 322

Query: 322 IAWQHLGI 329
            A++H G+
Sbjct: 323 SAYEHFGL 330


>gi|225374902|ref|ZP_03752123.1| hypothetical protein ROSEINA2194_00525 [Roseburia inulinivorans DSM
           16841]
 gi|225213285|gb|EEG95639.1| hypothetical protein ROSEINA2194_00525 [Roseburia inulinivorans DSM
           16841]
          Length = 330

 Score =  365 bits (936), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 171/325 (52%), Positives = 243/325 (74%), Gaps = 1/325 (0%)

Query: 7   LLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           ++S  V  ED  I   LRP+TL+++ GQ +A  NLKV+IEAAK R E+LDHVLF GPPGL
Sbjct: 5   VISTQVQDEDIKIEKNLRPQTLDDYIGQQKAKKNLKVYIEAAKQRGESLDHVLFFGPPGL 64

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLA ++A E+G + + TSGP I K G++AA+L+NL++ D+LF+DEIHRL+  VEE+L
Sbjct: 65  GKTTLAGIIANEMGTHMKITSGPAIGKPGEMAAILSNLQEGDILFVDEIHRLNRQVEEVL 124

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           YPAMED+ +D+M+G+G +ARS++++L +FTL+ ATTR GLL+ PL+DRFG+   L FY +
Sbjct: 125 YPAMEDYVIDIMIGKGATARSIRLDLPKFTLVGATTRAGLLSAPLRDRFGVIHHLEFYTV 184

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           ++LKTI+   ++  G+ + ++ A E+A RSRGTPR+A RLL+RVRDFAEV +   IT+++
Sbjct: 185 DELKTIIIHSSEKLGVEIDEDGAYELARRSRGTPRLANRLLKRVRDFAEVKYDGRITKDV 244

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           A  AL  L +DK G DQ D   L  I   F GGPVG++T++A + E    IED+ EPY++
Sbjct: 245 ASFALDLLEVDKFGLDQNDRNILMTIIEKFQGGPVGLDTLAASIGEDSGTIEDVYEPYLV 304

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGID 330
           Q GF+ RTP+GR++  +A+QH GI+
Sbjct: 305 QNGFVIRTPKGRMVTDLAYQHFGIE 329


>gi|327394172|dbj|BAK11594.1| Holliday junction DNA helicase RuvB [Pantoea ananatis AJ13355]
          Length = 304

 Score =  365 bits (936), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 180/294 (61%), Positives = 226/294 (76%)

Query: 36  ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD 95
             S  K    AA+ R +ALDH+L  GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGD
Sbjct: 7   CVSRWKFSSRAAQLRGDALDHLLIFGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGD 66

Query: 96  LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFT 155
           LAA+LTNLE  DVLFIDEIHRLS +VEE+LYPAMED+QLD+M+GEGP+ARS+K++L  FT
Sbjct: 67  LAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFT 126

Query: 156 LIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRS 215
           LI ATTR G LT+PL+DRFGI  RL FY+++DL+ IV R A   GLA+++EAA EIA RS
Sbjct: 127 LIGATTRAGSLTSPLRDRFGIVQRLEFYQVKDLQHIVGRSAACLGLALSEEAALEIARRS 186

Query: 216 RGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNF 275
           RGTPRIA RLLRRVRDFAEV     ++ +++  AL  L +D  GFD +D + L  I   F
Sbjct: 187 RGTPRIANRLLRRVRDFAEVRANGVLSGDVSVTALDMLNVDSEGFDYMDRKLLLAIIDKF 246

Query: 276 GGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
            GGPVG++ ++A + E R+ IED+IEP++IQQGFIQRTPRGR+    A++H GI
Sbjct: 247 TGGPVGLDNLAAAIGEERETIEDVIEPFLIQQGFIQRTPRGRMATQHAYRHFGI 300


>gi|302671007|ref|YP_003830967.1| holliday junction DNA helicase RuvB [Butyrivibrio proteoclasticus
           B316]
 gi|302395480|gb|ADL34385.1| holliday junction DNA helicase RuvB [Butyrivibrio proteoclasticus
           B316]
          Length = 343

 Score =  364 bits (935), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 171/323 (52%), Positives = 243/323 (75%), Gaps = 1/323 (0%)

Query: 13  SQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +QEDA I   LRP+ L+ + GQ +   +LK++IEAAK R ++LDH+LF GPPGLGKTTLA
Sbjct: 18  NQEDARIEGSLRPKRLDNYIGQKKIKESLKIYIEAAKKRGDSLDHLLFYGPPGLGKTTLA 77

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            ++A E+GVN + TSGP I K GD+AA+L NL++ DVLF+DEIHRL+  VEE+LYPAMED
Sbjct: 78  GIIAAEMGVNIKITSGPAIEKPGDMAAILNNLQEGDVLFVDEIHRLNRQVEEVLYPAMED 137

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + +D+M+G+GP+ARS++++L  FTLI ATTR G+L+ PL+DRFG+  R+ +Y+I++L TI
Sbjct: 138 YAIDIMIGKGPTARSIRLDLPHFTLIGATTRAGMLSAPLRDRFGMIHRMEYYDIDELSTI 197

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           + + A + G+ V ++ A E+A RSRGTPR+A R+L+RVRDFA+V +   IT +IA  AL 
Sbjct: 198 IMQSAGVLGVEVDEKGAVEMARRSRGTPRLANRILKRVRDFAQVKYDGRITEDIAITALD 257

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            + +DKMG D  D   L  +   FGGGPVG++T++A + E    IED+ EPY+I+ GF+ 
Sbjct: 258 LMDVDKMGLDHTDRNLLMTMIGKFGGGPVGLDTLAAAIGEDSGTIEDVYEPYLIKNGFLN 317

Query: 312 RTPRGRLLMPIAWQHLGIDIPHR 334
           RTPRGR++   A+ HLG+++P R
Sbjct: 318 RTPRGRVVTEEAYHHLGLEMPAR 340


>gi|153855298|ref|ZP_01996464.1| hypothetical protein DORLON_02478 [Dorea longicatena DSM 13814]
 gi|149752297|gb|EDM62228.1| hypothetical protein DORLON_02478 [Dorea longicatena DSM 13814]
          Length = 328

 Score =  364 bits (935), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 174/317 (54%), Positives = 238/317 (75%), Gaps = 1/317 (0%)

Query: 14  QEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           +ED  I + LRP+ LE++ GQ +A   LK++IEAAKAR EALDH+LF GPPGLGKTTLA 
Sbjct: 7   EEDVRIENHLRPQLLEDYIGQAKAKEMLKIYIEAAKARGEALDHLLFYGPPGLGKTTLAG 66

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++A E+ VN + TSGP I K G++AA+L NL++ D+LF+DEIHRL+  VEE+LYPAMED+
Sbjct: 67  IIANEMNVNMKITSGPAIEKPGEMAAILNNLQEGDILFVDEIHRLNRQVEEVLYPAMEDY 126

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            +D+M+G+G SARS++++L +FTL+ ATTR G+LT PL+DRFG+  R+ +Y +E+LK I+
Sbjct: 127 AIDIMIGKGASARSIRLDLPKFTLVGATTRAGMLTAPLRDRFGVVTRMEYYTVEELKMII 186

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R AK+  + + +  A  +A RSRGTPR+A RLL+RVRDFA+V +   IT E+AD AL  
Sbjct: 187 LRSAKVLEVGIDENGAYAMARRSRGTPRLANRLLKRVRDFAQVKYNGYITEEVADYALDL 246

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +DK G DQ D   L  +   FGGGPVG+ET++A + E    IED+ EPY+++ GFIQR
Sbjct: 247 LDVDKEGLDQTDRGILLAMIGKFGGGPVGLETLAASIGEDPGTIEDVYEPYLLKNGFIQR 306

Query: 313 TPRGRLLMPIAWQHLGI 329
           TPRGR++   A+ HLGI
Sbjct: 307 TPRGRVVTDAAYAHLGI 323


>gi|167766363|ref|ZP_02438416.1| hypothetical protein CLOSS21_00867 [Clostridium sp. SS2/1]
 gi|317496791|ref|ZP_07955121.1| Holliday junction DNA helicase RuvB [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|167711954|gb|EDS22533.1| hypothetical protein CLOSS21_00867 [Clostridium sp. SS2/1]
 gi|291559234|emb|CBL38034.1| Holliday junction DNA helicase, RuvB subunit [butyrate-producing
           bacterium SSC/2]
 gi|316895803|gb|EFV17955.1| Holliday junction DNA helicase RuvB [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 334

 Score =  364 bits (935), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 178/327 (54%), Positives = 241/327 (73%), Gaps = 1/327 (0%)

Query: 7   LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           ++S  + +ED  I + LRP+ L ++ GQ +   NLK+FIEAAK+R E+LDHVLF GPPGL
Sbjct: 5   MISTELVEEDIKIENHLRPQMLSDYIGQEKVKENLKIFIEAAKSRGESLDHVLFYGPPGL 64

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLA +VA E+GV+ + TSGP I K G++AA+L NL++ DVLFIDEIHRL+  VEE+L
Sbjct: 65  GKTTLAGIVANEMGVHLKVTSGPAIEKPGEIAAILNNLQEGDVLFIDEIHRLNRQVEEVL 124

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           YPAMED+ +D++VG+G +ARS+++ L RFTL+ ATTR G+LT PL+DRFG+  RLNFY  
Sbjct: 125 YPAMEDYAIDILVGKGQAARSIRLELPRFTLVGATTRAGMLTAPLRDRFGVVNRLNFYNS 184

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           E+L+TI++R A++  + +  E A EIA RSRGTPR+A RLL+RVRDFA+V +   IT EI
Sbjct: 185 EELQTIIERSAEVLEIGIDPEGALEIARRSRGTPRLANRLLKRVRDFAQVKYDGQITLEI 244

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           A  AL  L +D +G DQ D   L  +   F G PVG++T++A + E    IED+ EPY+I
Sbjct: 245 ARDALNHLEVDTIGLDQTDRNLLKTMMETFEGRPVGLDTLAAAIGEDSGTIEDVYEPYLI 304

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           Q G IQRTPRGR++   A++H  + IP
Sbjct: 305 QNGLIQRTPRGRVVTRSAYEHFHLPIP 331


>gi|89895212|ref|YP_518699.1| Holliday junction DNA helicase B [Desulfitobacterium hafniense Y51]
 gi|219669643|ref|YP_002460078.1| Holliday junction DNA helicase RuvB [Desulfitobacterium hafniense
           DCB-2]
 gi|122997256|sp|Q24UN7|RUVB_DESHY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|254767424|sp|B8FQV5|RUVB_DESHD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|89334660|dbj|BAE84255.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219539903|gb|ACL21642.1| Holliday junction DNA helicase RuvB [Desulfitobacterium hafniense
           DCB-2]
          Length = 348

 Score =  364 bits (934), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 180/316 (56%), Positives = 234/316 (74%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           D +  +LRP  L ++ GQ +   NL++FI+AA AR EALDHVL  GPPGLGKTTLA ++A
Sbjct: 14  DQEGEVLRPHRLADYIGQTKVKDNLQIFIQAALARGEALDHVLLYGPPGLGKTTLANIIA 73

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
            E+ VN R+TSGP I + GDLAA+LT+LE RDVLFIDEIHRLS   EEILY AMED  LD
Sbjct: 74  TEMEVNIRTTSGPAIERPGDLAAILTSLEPRDVLFIDEIHRLSRTTEEILYSAMEDGCLD 133

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           +++G+GPSARS+++ L  FTL+ ATTR G L +PL+DRFG+  RL FYE+EDL  I+ R 
Sbjct: 134 IVIGKGPSARSIRLTLPPFTLVGATTRAGQLASPLRDRFGVISRLEFYEVEDLIRIITRA 193

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255
           A +  L +T E A EIA RSRGTPR+A RLL+RVRD+A+V     +T+E+A  +L RL +
Sbjct: 194 AGILNLQITLEGASEIARRSRGTPRVANRLLKRVRDYAQVWEDGRVTQELAGKSLDRLEV 253

Query: 256 DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR 315
           D  G D++D + L  I + F GGPVG+ET+SA + E  + IED++EPY++QQGFIQRTPR
Sbjct: 254 DPAGLDRIDQKCLLTIIQMFAGGPVGLETLSATIGEEAETIEDVVEPYLLQQGFIQRTPR 313

Query: 316 GRLLMPIAWQHLGIDI 331
           GR+    A+QHL I +
Sbjct: 314 GRVATVRAYQHLNIPV 329


>gi|331083812|ref|ZP_08332921.1| Holliday junction ATP-dependent DNA helicase ruvB [Lachnospiraceae
           bacterium 6_1_63FAA]
 gi|330403237|gb|EGG82797.1| Holliday junction ATP-dependent DNA helicase ruvB [Lachnospiraceae
           bacterium 6_1_63FAA]
          Length = 329

 Score =  364 bits (934), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 173/308 (56%), Positives = 233/308 (75%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L ++ GQ +A  NLKV+IEAAK R +ALDHVLF GPPGLGKTTLA ++A ELGV+
Sbjct: 21  LRPQLLNDYIGQEKAKKNLKVYIEAAKQRGDALDHVLFYGPPGLGKTTLAGIIANELGVH 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGP I K G++AA+L NL++ DVLF+DEIHRL+  VEE+LYPAMED+ +D+M+G+G
Sbjct: 81  MKVTSGPAIEKPGEMAAILNNLQENDVLFVDEIHRLNRQVEEVLYPAMEDYAIDIMIGKG 140

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            +ARS++++L +FTL+ ATTR GLLT PL+DRFG+   L FY  E+L+TI+ R AK+ G+
Sbjct: 141 ATARSIRLDLPKFTLVGATTRAGLLTAPLRDRFGVVHHLEFYTEEELQTIIIRSAKVLGV 200

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + +  A E+A RSRGTPR+A RLL+RVRDFA+V +   IT+E+AD A+  L +D+ G D
Sbjct: 201 EIDEAGALEMAKRSRGTPRLANRLLKRVRDFAQVKYDGKITKEVADFAMDLLEVDRYGLD 260

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           Q D   LT I   F GGPVG++T+SA + E    IED+ EPY+I+ GF+ RTPRGR +  
Sbjct: 261 QTDRLLLTTIIERFLGGPVGLDTLSAAIGEDAGTIEDVYEPYLIKNGFLLRTPRGRTVTE 320

Query: 322 IAWQHLGI 329
           + + HLGI
Sbjct: 321 LTYHHLGI 328


>gi|227825065|ref|ZP_03989897.1| holliday junction DNA helicase ruvB [Acidaminococcus sp. D21]
 gi|226905564|gb|EEH91482.1| holliday junction DNA helicase ruvB [Acidaminococcus sp. D21]
          Length = 335

 Score =  364 bits (934), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 176/312 (56%), Positives = 233/312 (74%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPR L+E+ GQ +   N+ VFI+AA  R EALDHVL  GPPGLGKTTLA ++A ELGVN
Sbjct: 22  LRPRRLQEYIGQEKVKENMTVFIQAALKRREALDHVLLYGPPGLGKTTLANIIANELGVN 81

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGP + + GDLAA+LTNL++ +VLFIDEIHRL   VEEILY AMED+ LD+++G+G
Sbjct: 82  IRITSGPALERQGDLAAILTNLDESEVLFIDEIHRLPKTVEEILYSAMEDYALDIIIGKG 141

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARSV+++L RFTLI ATTR+G +  PL+DRFG+   L FY  E+L+ IV+R A++  +
Sbjct: 142 PAARSVRLDLPRFTLIGATTRMGSVAAPLRDRFGVICHLEFYTAEELQIIVERAAEILNV 201

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  E A EI  RSRGTPR+A RLL+RVRDFAEVA A TIT+EI    + RL ID +G D
Sbjct: 202 KIDHEGAYEIGRRSRGTPRVANRLLKRVRDFAEVAGADTITKEICRKTMERLEIDDLGLD 261

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           + D R LT + ++FGG PVG++T++A L+E  + +ED+ EPY++Q G +QRTP+GR    
Sbjct: 262 RSDRRLLTKLVKDFGGRPVGVDTLAASLNEESETLEDVYEPYLMQLGMLQRTPKGRQATA 321

Query: 322 IAWQHLGIDIPH 333
            A+++LGI  P 
Sbjct: 322 AAYRYLGIAYPE 333


>gi|326201642|ref|ZP_08191513.1| Holliday junction DNA helicase RuvB [Clostridium papyrosolvens DSM
           2782]
 gi|325988242|gb|EGD49067.1| Holliday junction DNA helicase RuvB [Clostridium papyrosolvens DSM
           2782]
          Length = 335

 Score =  364 bits (934), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 184/326 (56%), Positives = 233/326 (71%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           E L+      +D D   LRP+  +E+ GQ +A  NL VFIEAAK R EALDHVL  GPPG
Sbjct: 7   ERLVEAGNRSDDFDEVSLRPKRFDEYIGQSKAKGNLTVFIEAAKRRKEALDHVLLYGPPG 66

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLA +++ E+GVN R TSGP I KAGDLAA+LTNL   DVLFIDEIHRL+  VEEI
Sbjct: 67  LGKTTLASIISLEMGVNLRITSGPAIEKAGDLAAILTNLGTHDVLFIDEIHRLNRSVEEI 126

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPAMED+ LD+++G+GPSARS++++L +FTLI ATTR GLLT PL+DRFG+  +L  Y 
Sbjct: 127 LYPAMEDYALDIIIGKGPSARSIRLDLPKFTLIGATTRAGLLTAPLRDRFGVINKLEMYT 186

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            E+LK IV R A +  + +  E A EIA RSRGTPRIA RLL+RVRDFA+V  +  I  E
Sbjct: 187 SEELKEIVIRSAGILNIGLDQEGAYEIARRSRGTPRIANRLLKRVRDFAQVKGSGVIELE 246

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +A  AL  L +D++G D +D   L  I   FGGGPVG++T++A + E    IED+ EPY+
Sbjct: 247 LAKHALDALEVDEIGLDGVDRNMLLSIINKFGGGPVGLDTLAASIGEESGTIEDVYEPYL 306

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGID 330
           IQ GFI +TPRGR+    A+ H G++
Sbjct: 307 IQLGFINKTPRGRMATKNAYAHFGLE 332


>gi|220932068|ref|YP_002508976.1| Holliday junction DNA helicase RuvB [Halothermothrix orenii H 168]
 gi|219993378|gb|ACL69981.1| Holliday junction DNA helicase RuvB [Halothermothrix orenii H 168]
          Length = 342

 Score =  364 bits (934), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 178/336 (52%), Positives = 242/336 (72%), Gaps = 4/336 (1%)

Query: 2   MDREGLLSRNVSQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           MD E  +     +ED D++L   LRP  L  F GQ +    L +FIEAA  R E LDHVL
Sbjct: 1   MDLENRIISPEKKED-DMALDRSLRPERLNNFIGQEKVKEKLSIFIEAAITRQEPLDHVL 59

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA ++A EL V+  +TSGP I + GDLAA+LTNL+ +DVLFIDEIHRL+
Sbjct: 60  LYGPPGLGKTTLANIIANELNVSIHTTSGPAIERPGDLAAILTNLQPKDVLFIDEIHRLN 119

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            +VEE+LYPAMED+ LD+++G+GPSARS++++L  FTL+ ATTR GLL++PL+DRFG+  
Sbjct: 120 KVVEEVLYPAMEDYSLDIIIGKGPSARSIRLDLPPFTLVGATTRAGLLSSPLRDRFGVIN 179

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           RL FY  ++L  I++R A++ G+ V ++ A EI+ RSRGTPRIA RLL+RVRD+AEV   
Sbjct: 180 RLEFYGTDELAEIIKRSARVLGIEVNEDGAVEISKRSRGTPRIANRLLKRVRDYAEVKAD 239

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             I  E+ D AL  L ID++G D +D + L  I + F GGPVG+ T++A +SE  + IED
Sbjct: 240 GIIDTEVVDKALKLLEIDELGLDHIDHKLLKTIIKKFNGGPVGLNTLAASISEETETIED 299

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           + EPY++Q GFI+RTPRGR+    A++HL +D  ++
Sbjct: 300 VYEPYLLQLGFIERTPRGRVATLAAYEHLDVDYKNK 335


>gi|291544345|emb|CBL17454.1| Holliday junction DNA helicase, RuvB subunit [Ruminococcus sp.
           18P13]
          Length = 336

 Score =  364 bits (934), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 179/308 (58%), Positives = 230/308 (74%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+TL E+ GQ +   NL V+IEAA+ R E LDHVL  GPPGLGKTTLA ++A+E+GVN
Sbjct: 17  LRPKTLNEYIGQDKVKENLAVYIEAARRRGEPLDHVLLYGPPGLGKTTLAGIIAQEMGVN 76

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGP I KAGDLAALLTNL + DVLFIDEIHRLS  VEE+LYPAMED  LD+++G+G
Sbjct: 77  LRITSGPAIEKAGDLAALLTNLSENDVLFIDEIHRLSRAVEEVLYPAMEDNALDIVIGKG 136

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSA S++++L +FTL+ ATTR G LT+PL+DRFGI  RL  Y  E L  I++R + L G+
Sbjct: 137 PSANSIRVDLPKFTLVGATTRAGQLTSPLRDRFGIIQRLELYPPEQLCDIIRRSSMLLGI 196

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
               + A E+A R+RGTPRIA RLL+RVRDFA+V     I+R+IA  AL +L ID++G D
Sbjct: 197 PCEYDGAMELARRARGTPRIANRLLKRVRDFADVMGDGRISRQIACTALDKLEIDELGLD 256

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            LD R L MI + + GGPVG+ET+++ + E    +ED+ EPY++Q GF+ RTPRGR    
Sbjct: 257 SLDKRMLQMIIKGYNGGPVGLETLASAIGEEAVTLEDVCEPYLMQLGFLSRTPRGRCATQ 316

Query: 322 IAWQHLGI 329
           +A+QHLGI
Sbjct: 317 LAYQHLGI 324


>gi|218288864|ref|ZP_03493115.1| Holliday junction DNA helicase RuvB [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218240953|gb|EED08130.1| Holliday junction DNA helicase RuvB [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 332

 Score =  363 bits (933), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 179/328 (54%), Positives = 242/328 (73%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           E L+S    +EDA +  +RPR L+++ GQ     NL++FI+AAK R E LDHVL  GPPG
Sbjct: 3   ERLISAEWMREDAQLDTIRPRFLDDYIGQRAVVENLRIFIQAAKERGEPLDHVLLYGPPG 62

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKT+LA ++A ELGV  R TSGP I +AGDLAA+LTNL+  DV+FIDEIHRLS  VEE+
Sbjct: 63  LGKTSLAMIIANELGVQIRVTSGPAIERAGDLAAILTNLQPGDVMFIDEIHRLSPSVEEV 122

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPAMEDF +D+++G+GPSARSV+++L  FTLI ATTR GLL++PL+DRFG+ + L++Y 
Sbjct: 123 LYPAMEDFAIDIVIGKGPSARSVRLDLPPFTLIGATTRAGLLSHPLRDRFGVMLHLDYYP 182

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           + DL  IV+R A++  L++T++   EIA R+RGTPRIA RLL+RVRD A+VA    I   
Sbjct: 183 VRDLAEIVKRNARILQLSITEDGCAEIARRARGTPRIANRLLKRVRDIAQVAGWPEIDAA 242

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
            A  AL +L +D +G D  D R L      FGGGPVG++T++A + E    +ED+ EPY+
Sbjct: 243 RAAEALAQLHVDPLGLDATDKRILEAAMDKFGGGPVGLDTLAAAVGEEPSTLEDVYEPYL 302

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           +Q GF++RTPRGR++MP A++HLG  +P
Sbjct: 303 LQIGFLKRTPRGRVVMPSAYRHLGRVVP 330


>gi|297181901|gb|ADI18078.1| holliday junction resolvasome, helicase subunit [uncultured
           Acidobacteriales bacterium HF0200_23L05]
          Length = 339

 Score =  363 bits (933), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 187/334 (55%), Positives = 236/334 (70%), Gaps = 1/334 (0%)

Query: 2   MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M+ E +LS     EDA     LRPR L+++ GQ     NL V I A + R EALDHVL  
Sbjct: 1   MNTENILSTVQVDEDAQYEAGLRPRHLDDYIGQDRVRENLTVAITATRNREEALDHVLLY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA V+  ELGV  R TSGPV+ K GDLAALLTNL+DR+VLFIDEIHR+S  
Sbjct: 61  GPPGLGKTTLAYVIGNELGVQVRGTSGPVLEKPGDLAALLTNLKDREVLFIDEIHRMSSA 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EEILY AMED++LD+++G+GP ARSVK+ L +FTLI ATTR GLLT+PL+ RFG+  RL
Sbjct: 121 IEEILYSAMEDYELDIVIGQGPGARSVKVPLQKFTLIGATTRAGLLTSPLRARFGLVHRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           +FY   DL  I+ R A++  + + DEA  E+A RSRGTPR+A RLLRRVRD+AEV     
Sbjct: 181 DFYTESDLVEIISRSARILDVPIVDEATGELARRSRGTPRVANRLLRRVRDYAEVRADGR 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           IT ++A  AL  L +D  GFD+ D R L  I   F GGPVG+ +I+A +SE ++AIED+ 
Sbjct: 241 ITIDVARQALTLLEVDDQGFDEADRRLLRAIIDKFNGGPVGLNSIAAAISEEKEAIEDIY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           EPY+IQ GF+ RTPRGR+    A+ + G+  P R
Sbjct: 301 EPYLIQLGFLDRTPRGRVATARAYDYFGLPTPDR 334


>gi|294501381|ref|YP_003565081.1| holliday junction DNA helicase RuvB [Bacillus megaterium QM B1551]
 gi|294351318|gb|ADE71647.1| holliday junction DNA helicase RuvB [Bacillus megaterium QM B1551]
          Length = 333

 Score =  363 bits (933), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 174/311 (55%), Positives = 237/311 (76%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+TL+++ GQ +  S+L +FI+AAK R+E LDHVL  GPPGLGKTTLA ++A E+GV 
Sbjct: 21  LRPQTLQQYIGQHKVKSHLDIFIKAAKMRSETLDHVLLYGPPGLGKTTLATIIANEMGVQ 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R+TSGP I + GDLAA+LT+LE  DVLFIDEIHRL+  VEE+LYPAMEDF LD+++G+G
Sbjct: 81  IRTTSGPAIERPGDLAAVLTSLEPGDVLFIDEIHRLNRSVEEVLYPAMEDFCLDIVIGKG 140

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSARSV+++L  FTL+ ATTR GLL++PL+DRFG+  RL +Y+ EDL +IV+R A +  +
Sbjct: 141 PSARSVRLDLPPFTLVGATTRAGLLSSPLRDRFGVLSRLEYYQEEDLASIVERTAAILDV 200

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + ++A  E+A R+RGTPRIA RLLRRVRDFA+V     IT  +A+ AL  L +D++G D
Sbjct: 201 EIDEKATFEMARRARGTPRIANRLLRRVRDFAQVKGDGAITERLANEALEMLQVDRLGLD 260

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  I   F GGPVG++TISA + E    IED+ EPY++Q GF+QRTPRGR++ P
Sbjct: 261 HIDHKLLRGIIEKFRGGPVGLDTISATIGEESHTIEDVYEPYLLQIGFLQRTPRGRIVTP 320

Query: 322 IAWQHLGIDIP 332
           + + H  +++P
Sbjct: 321 LVYDHFQLEVP 331


>gi|212212079|ref|YP_002303015.1| Holliday junction DNA helicase RuvB [Coxiella burnetii CbuG_Q212]
 gi|226698773|sp|B6IYU2|RUVB_COXB2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|212010489|gb|ACJ17870.1| holliday junction DNA helicase [Coxiella burnetii CbuG_Q212]
          Length = 351

 Score =  363 bits (932), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 180/311 (57%), Positives = 225/311 (72%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L ++ GQ      + +FI AA  R EALDHVL  GPPGLGKTTLA ++A E+   
Sbjct: 25  IRPKRLSDYIGQAAVREQMDIFIRAATNRREALDHVLIFGPPGLGKTTLAHIIAHEMQAG 84

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGPV+ KAGDLAALLTNLE  DVLFIDEIHRL+  +EE+LYPA+EDFQLD+++GEG
Sbjct: 85  LKQTSGPVLEKAGDLAALLTNLEPHDVLFIDEIHRLNPAIEEVLYPALEDFQLDIIIGEG 144

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSARS+K++L  FTL+ ATTR GLLT+PL+DRFGI  RL FY I DL  IV+R A +  +
Sbjct: 145 PSARSIKLDLPPFTLVGATTRAGLLTSPLRDRFGIVQRLEFYRIPDLIHIVKRAAHILNV 204

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + +  A EIA RSRGTPRIA RLLRRVRDFAEV     I   IA  AL  L +D  G D
Sbjct: 205 VIDENGAGEIARRSRGTPRIANRLLRRVRDFAEVRANGMINESIAKEALDLLNVDIRGLD 264

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  I + F GGPVGIE+++A +SE R  IED+IEPY+IQ+GFI RTPRGR+   
Sbjct: 265 VMDRKLLETIIKKFQGGPVGIESLAAAISEERGTIEDVIEPYLIQEGFILRTPRGRIATE 324

Query: 322 IAWQHLGIDIP 332
           + +QH  + +P
Sbjct: 325 LTYQHFKLPLP 335


>gi|323698438|ref|ZP_08110350.1| Holliday junction DNA helicase RuvB [Desulfovibrio sp. ND132]
 gi|323458370|gb|EGB14235.1| Holliday junction DNA helicase RuvB [Desulfovibrio desulfuricans
           ND132]
          Length = 328

 Score =  363 bits (932), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 177/306 (57%), Positives = 232/306 (75%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR L +F GQV+  +NL VFI AA+ R  +LDH LF G PGLGKTTLA+++A ELGVN
Sbjct: 11  VRPRKLSDFIGQVDLRTNLDVFIRAARERDRSLDHTLFYGNPGLGKTTLARIMASELGVN 70

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
             STSGPVI ++GDLAA+LTNLE  D+LFIDEIHR+   VEE+LYPAMEDFQ+DL++G G
Sbjct: 71  MVSTSGPVIERSGDLAAILTNLERGDILFIDEIHRMPPTVEEVLYPAMEDFQIDLVIGSG 130

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P AR+VK++L  FTL+ ATTR+GLLT+PL+DRFG   R+ FY  E+L  IV+R A + G+
Sbjct: 131 PGARTVKLDLEPFTLVGATTRLGLLTSPLRDRFGCIFRIEFYSPEELGRIVERSAAILGV 190

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            V  E A  I  R+RGTPRIA RLLRRVRD+A V  +  +TRE+A+++L RL +D+ G D
Sbjct: 191 KVEPEGALAIGRRARGTPRIANRLLRRVRDYALVHGSGVVTRELAESSLERLDVDQYGLD 250

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + LT++  +F GGPVG++TI+A  +E    IED+ EPY+IQ GF++RTPRGR+   
Sbjct: 251 NMDRKILTLMVEHFNGGPVGLKTIAAACAEEVRTIEDIYEPYLIQCGFLKRTPRGRVATA 310

Query: 322 IAWQHL 327
            A+QHL
Sbjct: 311 KAYQHL 316


>gi|29654861|ref|NP_820553.1| Holliday junction DNA helicase RuvB [Coxiella burnetii RSA 493]
 gi|153208757|ref|ZP_01946995.1| Holliday junction DNA helicase RuvB [Coxiella burnetii 'MSU Goat
           Q177']
 gi|154706412|ref|YP_001423838.1| Holliday junction DNA helicase RuvB [Coxiella burnetii Dugway
           5J108-111]
 gi|161829825|ref|YP_001597406.1| Holliday junction DNA helicase RuvB [Coxiella burnetii RSA 331]
 gi|165918690|ref|ZP_02218776.1| Holliday junction DNA helicase RuvB [Coxiella burnetii RSA 334]
 gi|212219282|ref|YP_002306069.1| Holliday junction DNA helicase RuvB [Coxiella burnetii CbuK_Q154]
 gi|44888457|sp|Q83BE0|RUVB_COXBU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|189046028|sp|A9KF39|RUVB_COXBN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|189046029|sp|A9N9A3|RUVB_COXBR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|226698772|sp|B6J507|RUVB_COXB1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|29542130|gb|AAO91067.1| holliday junction DNA helicase [Coxiella burnetii RSA 493]
 gi|120575789|gb|EAX32413.1| Holliday junction DNA helicase RuvB [Coxiella burnetii 'MSU Goat
           Q177']
 gi|154355698|gb|ABS77160.1| holliday junction DNA helicase [Coxiella burnetii Dugway 5J108-111]
 gi|161761692|gb|ABX77334.1| Holliday junction DNA helicase RuvB [Coxiella burnetii RSA 331]
 gi|165917625|gb|EDR36229.1| Holliday junction DNA helicase RuvB [Coxiella burnetii RSA 334]
 gi|212013544|gb|ACJ20924.1| holliday junction DNA helicase [Coxiella burnetii CbuK_Q154]
          Length = 351

 Score =  363 bits (932), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 183/327 (55%), Positives = 231/327 (70%), Gaps = 1/327 (0%)

Query: 7   LLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           L+   V   + D+   +RP+ L ++ GQ      + +FI AA  R EALDHVL  GPPGL
Sbjct: 9   LIGATVQSNEPDLERSIRPKRLSDYIGQAAVREQMDIFIRAATNRREALDHVLIFGPPGL 68

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLA ++A E+    + TSGPV+ KAGDLAALLTNLE  DVLFIDEIHRL+  +EE+L
Sbjct: 69  GKTTLAHIIAHEMQAGLKQTSGPVLEKAGDLAALLTNLEPHDVLFIDEIHRLNPAIEEVL 128

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           YPA+EDFQLD+++GEGPSARS+K++L  FTL+ ATTR GLLT+PL+DRFGI  RL FY I
Sbjct: 129 YPALEDFQLDIIIGEGPSARSIKLDLPPFTLVGATTRAGLLTSPLRDRFGIVQRLEFYRI 188

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
            DL  IV+R A +  + + +  A EIA RSRGTPRIA RLLRRVRDFAEV     I   I
Sbjct: 189 PDLIHIVKRAAHILNVVIDENGAGEIARRSRGTPRIANRLLRRVRDFAEVRANGMINESI 248

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           A  AL  L +D  G D +D + L  I + F GGPVGIE+++A +SE R  IED+IEPY+I
Sbjct: 249 AKEALDLLNVDIRGLDVMDRKLLETIIKKFQGGPVGIESLAAAISEERGTIEDVIEPYLI 308

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           Q+GFI RTPRGR+   + +QH  + +P
Sbjct: 309 QEGFILRTPRGRIATELTYQHFKLPLP 335


>gi|149370926|ref|ZP_01890521.1| Holliday junction DNA helicase B [unidentified eubacterium SCB49]
 gi|149355712|gb|EDM44270.1| Holliday junction DNA helicase B [unidentified eubacterium SCB49]
          Length = 340

 Score =  363 bits (932), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 185/319 (57%), Positives = 233/319 (73%), Gaps = 1/319 (0%)

Query: 11  NVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           N+S +D DI   LRP + E+FTGQ +A  NL++F++AA  R EALDH LF GPPGLGKTT
Sbjct: 11  NLSPQDLDIEKTLRPLSFEDFTGQDQALENLQIFVQAANQRGEALDHALFHGPPGLGKTT 70

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           LA ++A EL V  + TSGPV+ K GDLA LLTNLE+RDVLFIDEIHRLS IVEE LY AM
Sbjct: 71  LAHILANELEVGIKVTSGPVLDKPGDLAGLLTNLEERDVLFIDEIHRLSPIVEEYLYSAM 130

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           ED+++D+M+  GP+ARSV+I+L+ FTL+ ATTR GLLT P++ RFGI  RL +Y  E L 
Sbjct: 131 EDYKIDIMIESGPNARSVQIHLAPFTLVGATTRSGLLTAPMRARFGISSRLQYYSTELLT 190

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
           TI+QR A +  + ++ EAA EIA RSRGTPRIA  LLRRVRDFA++     I   IA  A
Sbjct: 191 TILQRSAGILNMPISMEAAIEIAGRSRGTPRIANALLRRVRDFAQIKGDGNIDITIAKFA 250

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           L  L +D  G D++D + LT I   F GGPVGI TI+  +SE  + IE++ EP++IQQGF
Sbjct: 251 LNALNVDAHGLDEMDNKILTTIIDKFKGGPVGITTIATAVSESPETIEEVYEPFLIQQGF 310

Query: 310 IQRTPRGRLLMPIAWQHLG 328
           I RTPRGR +   A++HLG
Sbjct: 311 IMRTPRGREVTEAAYKHLG 329


>gi|297588494|ref|ZP_06947137.1| crossover junction ATP-dependent DNA helicase RuvB [Finegoldia
           magna ATCC 53516]
 gi|297573867|gb|EFH92588.1| crossover junction ATP-dependent DNA helicase RuvB [Finegoldia
           magna ATCC 53516]
          Length = 335

 Score =  363 bits (931), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 178/317 (56%), Positives = 230/317 (72%), Gaps = 1/317 (0%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           + ED D +L RP+ + ++ GQ +    L +FIEAAK R E LDH L  GPPGLGKTTLA 
Sbjct: 16  TDEDIDFNL-RPKWMSDYIGQDKVKKKLSIFIEAAKNRNEPLDHALLYGPPGLGKTTLAH 74

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++A E+GVN R TSGP I K  DLA++LTNL+  DVLFIDEIHR++  VEEILYPAMED+
Sbjct: 75  IIANEMGVNLRVTSGPAIEKPSDLASILTNLQKDDVLFIDEIHRINRSVEEILYPAMEDY 134

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            LD++VG+GPSARS++I+L +FTLI ATTR G LT PL+DRFG+ + L  Y+IE LK IV
Sbjct: 135 ALDIIVGKGPSARSLRIDLEKFTLIGATTRSGQLTGPLRDRFGVLLNLELYDIESLKKIV 194

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R A + G+ + +E A EIA RSRGTPRIA RLL+RVRD+AEV    TIT+EI++  L  
Sbjct: 195 TRSAGVLGIGIDEEGAMEIARRSRGTPRIANRLLKRVRDYAEVRADGTITKEISNRGLNL 254

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +DK G D +D + +  +  NF GGPVG++TI+A   E R  IED+ EPY++Q GFI R
Sbjct: 255 LEVDKCGLDYVDRKIIMTMINNFDGGPVGVDTIAAATGEERITIEDVYEPYLLQIGFINR 314

Query: 313 TPRGRLLMPIAWQHLGI 329
           T RGR++   A++H  I
Sbjct: 315 TSRGRIVTDKAYKHFNI 331


>gi|288555343|ref|YP_003427278.1| Holliday junction DNA helicase RuvB [Bacillus pseudofirmus OF4]
 gi|288546503|gb|ADC50386.1| Holliday junction DNA helicase RuvB [Bacillus pseudofirmus OF4]
          Length = 333

 Score =  363 bits (931), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 178/320 (55%), Positives = 236/320 (73%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           ED+    +RP  L ++ GQ +   NLK+FIEAAK R E LDHVL  GPPGLGKTTL+ ++
Sbjct: 14  EDSIDQSIRPMDLNQYIGQEKVKQNLKIFIEAAKMREECLDHVLLYGPPGLGKTTLSGII 73

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A E+GV  R+TSGP I + GDLAA+LT LE  DVLFIDEIHRL+ +VEE+LYPAMEDF L
Sbjct: 74  ASEMGVEMRTTSGPAIERPGDLAAILTALEPGDVLFIDEIHRLNRMVEEVLYPAMEDFCL 133

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D+++G+GP+ARSV+++L  FTL+ ATTR G+L+ PL+DRFG+  RL +Y   +L  IV+R
Sbjct: 134 DIVIGKGPTARSVRLDLPPFTLVGATTRAGMLSAPLRDRFGVMARLEYYTEAELAFIVKR 193

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A +    + DEAA EIA RSRGTPRIA RLLRRVRDFA+V    TI  ++A+ AL +L 
Sbjct: 194 TASIFETELDDEAALEIARRSRGTPRIANRLLRRVRDFAQVKGDGTIPVDLAEDALEKLQ 253

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D++G D +D + L  +   F GGPVG+ETISA + E  + IED+ EPY++Q GF+QRTP
Sbjct: 254 VDRLGLDHIDHKLLIGMIEKFRGGPVGLETISATIGEESETIEDVYEPYLLQIGFLQRTP 313

Query: 315 RGRLLMPIAWQHLGIDIPHR 334
           RGR++ P+ +QH  ++ P R
Sbjct: 314 RGRMVTPLCYQHFNLEEPSR 333


>gi|295706728|ref|YP_003599803.1| holliday junction DNA helicase RuvB [Bacillus megaterium DSM 319]
 gi|294804387|gb|ADF41453.1| holliday junction DNA helicase RuvB [Bacillus megaterium DSM 319]
          Length = 333

 Score =  363 bits (931), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 174/311 (55%), Positives = 237/311 (76%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+TL+++ GQ +  S+L +FI+AAK R+E LDHVL  GPPGLGKTTLA ++A E+GV 
Sbjct: 21  LRPQTLQQYIGQHKVKSHLDIFIKAAKMRSETLDHVLLYGPPGLGKTTLATIIANEMGVQ 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R+TSGP I + GDLAA+LT+LE  DVLFIDEIHRL+  VEE+LYPAMEDF LD+++G+G
Sbjct: 81  IRTTSGPAIERPGDLAAVLTSLEPGDVLFIDEIHRLNRSVEEVLYPAMEDFCLDIVIGKG 140

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSARSV+++L  FTL+ ATTR GLL++PL+DRFG+  RL +Y+ EDL +IV+R A +  +
Sbjct: 141 PSARSVRLDLPPFTLVGATTRAGLLSSPLRDRFGVLSRLEYYQEEDLASIVERTAAILDV 200

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + ++A  E+A R+RGTPRIA RLLRRVRDFA+V     IT  +A+ AL  L +D++G D
Sbjct: 201 EIDEKATFEMARRARGTPRIANRLLRRVRDFAQVKGDGAITERLANEALEMLQVDRLGLD 260

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  I   F GGPVG++TISA + E    IED+ EPY++Q GF+QRTPRGR++ P
Sbjct: 261 HIDHKLLRGIIEKFRGGPVGLDTISATIGEESHTIEDVYEPYLLQIGFLQRTPRGRIVTP 320

Query: 322 IAWQHLGIDIP 332
           + + H  +++P
Sbjct: 321 LVYGHFQLEVP 331


>gi|260437053|ref|ZP_05790869.1| holliday junction DNA helicase RuvB [Butyrivibrio crossotus DSM
           2876]
 gi|292810362|gb|EFF69567.1| holliday junction DNA helicase RuvB [Butyrivibrio crossotus DSM
           2876]
          Length = 333

 Score =  363 bits (931), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 179/329 (54%), Positives = 236/329 (71%), Gaps = 2/329 (0%)

Query: 2   MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MDR  +++   + ED  I + LRP +L+E+ GQ     NLKVFIEAAK+R E+LDH LF 
Sbjct: 1   MDRR-IITTEFTSEDVKIENNLRPSSLDEYIGQTAIKENLKVFIEAAKSRNESLDHCLFY 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA V+A E+GVN + TSGP I K GD+AA+L NL D D+LFIDEIHRL+  
Sbjct: 60  GPPGLGKTTLAGVIAAEMGVNIKVTSGPTIEKPGDMAAILNNLSDGDILFIDEIHRLNRQ 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDF +D+M+G+G +ARS++++L  FTL+ ATTR GLLT PL+DRFG+  RL
Sbjct: 120 VEEVLYPAMEDFAIDIMIGKGQTARSIRLDLPHFTLVGATTRAGLLTAPLRDRFGVVNRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y I++LK I+ R A +    +  + A E+A RSRGTPR+A RLL+RVRDFA+V +   
Sbjct: 180 EYYTIDELKNIIIRSAGVLKAPIDKDGATELARRSRGTPRLANRLLKRVRDFAQVKYDGI 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           ITRE+ D +L  L +DK G D+ D   L  I   +GGGPVG++T++A L E    +ED+ 
Sbjct: 240 ITREVVDYSLDLLEVDKEGLDKNDRNILFTIIEKYGGGPVGLDTLAASLGEDAGTLEDVY 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           EPY+I  GFI RTPRGR++    + H GI
Sbjct: 300 EPYLIFNGFINRTPRGRMVTEHCYNHFGI 328


>gi|78045225|ref|YP_360354.1| Holliday junction DNA helicase RuvB [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|97189970|sp|Q3ABY0|RUVB_CARHZ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|77997340|gb|ABB16239.1| Holliday junction DNA helicase RuvB [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 339

 Score =  363 bits (931), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 185/325 (56%), Positives = 235/325 (72%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           E L+S     ED +   LRPR L E+ GQ +    + +FIEAAK R EALDHVL  GPPG
Sbjct: 3   ERLVSGYELTEDENEFSLRPRRLSEYIGQQKVKETISIFIEAAKKRNEALDHVLLFGPPG 62

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLA ++A ELGV+ + TSGP + + GDLAA+LTNL ++DVLFIDEIHRL  IVEE+
Sbjct: 63  LGKTTLATIIANELGVDIKITSGPALERPGDLAAILTNLGEKDVLFIDEIHRLPRIVEEV 122

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LY AMEDF LD+M+G+GP ARS++++L +FTLI ATTR GLLT+PL+DRFG+  RL FY 
Sbjct: 123 LYSAMEDFALDIMLGKGPGARSLRLSLPKFTLIGATTRAGLLTSPLRDRFGMVHRLEFYS 182

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +E+L  I+ R A L    +T E + EIA RSRGTPRIA RLL+RVRD+AEV  +  I  E
Sbjct: 183 VEELMLIINRSAALLKTEITPEGSFEIAKRSRGTPRIANRLLKRVRDYAEVRSSGVINLE 242

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
            A AAL  L ID++G D  D   L  +   + GGPVGIE I+A +SE  D IED+ EP++
Sbjct: 243 NAKAALDLLEIDELGLDPTDRLILKTMIEKYQGGPVGIEAIAAAISEEVDTIEDVYEPFL 302

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGI 329
           +Q GFI+RTPRGR++  +A+ HLGI
Sbjct: 303 LQIGFIKRTPRGRVVTKLAYDHLGI 327


>gi|309388951|gb|ADO76831.1| Holliday junction DNA helicase subunit RuvB [Halanaerobium
           praevalens DSM 2228]
          Length = 335

 Score =  363 bits (931), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 178/320 (55%), Positives = 234/320 (73%), Gaps = 3/320 (0%)

Query: 13  SQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
            Q+  D SL   LRP  L E+ GQ ++   LK+FI+AAK R EALDHV+  GPPGLGKTT
Sbjct: 11  KQKKDDNSLDKGLRPLNLNEYVGQSKSKEKLKIFIQAAKDREEALDHVMLYGPPGLGKTT 70

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           LA ++A EL VN   TSGP I + GDLA++LTNL+  DVLFIDEIHRL+ IVEE+LYPAM
Sbjct: 71  LANIIANELNVNIHQTSGPAIERPGDLASILTNLQPSDVLFIDEIHRLNKIVEEVLYPAM 130

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           ED+ LD+++G+GPSARSV+++L+ FTL+ ATT+ G L++PL+DRFG+  RL FY  ++L+
Sbjct: 131 EDYCLDIIIGKGPSARSVRLDLAPFTLVGATTKAGRLSSPLRDRFGVINRLEFYNQKELQ 190

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            IV R A +  + +    A EIA RSRGTPRIA RLL+RVRDFAEV     I RE+ D+A
Sbjct: 191 KIVTRSAAILKIEIVPHGALEIARRSRGTPRIANRLLKRVRDFAEVKADGIINREVVDSA 250

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           L  L ID++G D++D + L  I   F GGPVG+ T++A +SE  + IED+ EPY++Q GF
Sbjct: 251 LKLLEIDELGLDRIDHKLLETIILKFRGGPVGLNTLAAAISEETETIEDVYEPYLLQLGF 310

Query: 310 IQRTPRGRLLMPIAWQHLGI 329
           ++RTPRGR+    A+QHL I
Sbjct: 311 LERTPRGRVATAKAYQHLNI 330


>gi|297170980|gb|ADI21995.1| holliday junction resolvasome, helicase subunit [uncultured
           myxobacterium HF0200_01L06]
          Length = 346

 Score =  363 bits (931), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 192/330 (58%), Positives = 240/330 (72%), Gaps = 2/330 (0%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           +R  L   ++ +E+     LRPR+LEE  GQ     NL VF+ AA+ R EA+DHVLF GP
Sbjct: 7   ERGSLSGGSLPEEERAEETLRPRSLEEMVGQDRLRENLSVFVRAAREREEAMDHVLFYGP 66

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKT+LA++VARE+   FR+TSGP I +AGDLAALL+NL+  DVLFIDEIHRLS  +E
Sbjct: 67  PGLGKTSLARIVAREMEAQFRATSGPSIERAGDLAALLSNLQPGDVLFIDEIHRLSPAIE 126

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILYPAMEDF LDLM+GEGPSARS+++ L RFTL+ ATTR GLLT+PL+DRFG   RL +
Sbjct: 127 EILYPAMEDFALDLMIGEGPSARSIRLELPRFTLVGATTRAGLLTSPLRDRFGWSARLEY 186

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV--AHAKT 240
           Y   DL+ IV R A L G+AV  EAA EIA RSRGTPRIA RLLRRVRDFAEV     + 
Sbjct: 187 YPASDLERIVSRSAGLLGVAVESEAAREIAGRSRGTPRIANRLLRRVRDFAEVEGESGEA 246

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           ++R+ A  AL RL +D+ GFD LD   +  +   F  GPVG+ET+SA + E +  IED++
Sbjct: 247 VSRDRARDALRRLEVDEAGFDGLDRALMRTLIDKFDSGPVGLETLSAAVGEDKGTIEDVV 306

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           EPY+I QGF+ RTPRGR+    A +H G++
Sbjct: 307 EPYLIFQGFLDRTPRGRVATRRAREHFGVE 336


>gi|325264008|ref|ZP_08130741.1| holliday junction DNA helicase RuvB [Clostridium sp. D5]
 gi|324031046|gb|EGB92328.1| holliday junction DNA helicase RuvB [Clostridium sp. D5]
          Length = 332

 Score =  362 bits (930), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 173/317 (54%), Positives = 236/317 (74%), Gaps = 1/317 (0%)

Query: 14  QEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           +ED  I S LRP+ LE++ GQ +A   L ++I+AAK R EALDHVLF GPPGLGKTTLA 
Sbjct: 12  EEDVKIESSLRPQHLEDYIGQEKAKETLNIYIKAAKERQEALDHVLFYGPPGLGKTTLAG 71

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++A E+GVN + TSGP I K G++AA+L NL++ DVLF+DEIHRL+  VEE+LYPAMED+
Sbjct: 72  IIANEMGVNMKITSGPAIEKPGEMAAILNNLQEHDVLFVDEIHRLNRQVEEVLYPAMEDY 131

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            +D+M+G+G +ARS++++L +FTL+ ATTR G+LT PL+DRFG+   L FY  E+LKTI+
Sbjct: 132 AIDIMIGKGATARSIRLDLPKFTLVGATTRAGMLTAPLRDRFGVVNHLEFYTEEELKTII 191

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R A++ G+ +    A E+A RSRGTPR+A RLL+RVRDFA+V +   IT  +A+ AL  
Sbjct: 192 MRSAQVLGVEIDVNGALELAKRSRGTPRLANRLLKRVRDFAQVKYDGVITEAVANYALDL 251

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +DK G D +D   L  +   F GGPVG++T+SA +SE    +ED+ EPY+++ GFIQR
Sbjct: 252 LDVDKYGLDHIDRTILLTMIEKFQGGPVGLDTLSASISEDAGTLEDVYEPYLLKSGFIQR 311

Query: 313 TPRGRLLMPIAWQHLGI 329
           TPRGR+   +A+ HLGI
Sbjct: 312 TPRGRVATELAYTHLGI 328


>gi|167564064|ref|ZP_02356980.1| Holliday junction DNA helicase B [Burkholderia oklahomensis EO147]
          Length = 339

 Score =  362 bits (930), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 188/310 (60%), Positives = 231/310 (74%), Gaps = 1/310 (0%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           + E+A    LRPR L+E+ GQ +    L++FIEAAK R+EALDHVL  GPPGLGKTTLA 
Sbjct: 20  THEEAFERALRPRQLDEYVGQEKVRDQLEIFIEAAKRRSEALDHVLLFGPPGLGKTTLAH 79

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++ARE+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+
Sbjct: 80  IIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDY 139

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           Q+D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY+ E L  IV
Sbjct: 140 QIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYDAEQLSRIV 199

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           +R A L    +    A EIA RSRGTPRIA RLLRRVRD+AEV    +IT  +ADAAL  
Sbjct: 200 RRSAALLNAQIDPNGALEIAKRSRGTPRIANRLLRRVRDYAEVRADGSITAAVADAALAM 259

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI-Q 311
           L +D +GFD +D + L  I   F GGPVG++ ++A + E RD IED++EPY+IQQGF   
Sbjct: 260 LDVDPVGFDLMDRKLLEAILHKFDGGPVGVDNLAAAIGEERDTIEDVLEPYLIQQGFFAA 319

Query: 312 RTPRGRLLMP 321
             PR R   P
Sbjct: 320 HAPRPRRDAP 329


>gi|256831253|ref|YP_003159981.1| Holliday junction DNA helicase RuvB [Desulfomicrobium baculatum DSM
           4028]
 gi|256580429|gb|ACU91565.1| Holliday junction DNA helicase RuvB [Desulfomicrobium baculatum DSM
           4028]
          Length = 324

 Score =  362 bits (930), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 175/306 (57%), Positives = 230/306 (75%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRTL++F GQ +   NLK++++AAK R + LDH L  G PGLGKTTLAQ++A ELGVN
Sbjct: 10  IRPRTLDDFIGQEDVRGNLKIYLQAAKERGQQLDHCLLYGNPGLGKTTLAQIMASELGVN 69

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
             STSGPV+ ++GDLAA+LT+L   D+LFIDEIHR+  +VEEILYP MEDF+LDL+VG+G
Sbjct: 70  LVSTSGPVLERSGDLAAILTSLNRHDLLFIDEIHRMPPVVEEILYPGMEDFKLDLIVGQG 129

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P AR+VKI L  FTL+ ATTR+GLLT+PL+DRFG+  RL FY  ++L  IV R A++ GL
Sbjct: 130 PGARTVKIELEPFTLVGATTRIGLLTSPLRDRFGVICRLEFYNPQELSLIVTRAARILGL 189

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            ++ + A EI  RSRGTPRIA RLLRRV D+A+VA +  I  E+A   L  + +D  G D
Sbjct: 190 QISADGALEIGKRSRGTPRIANRLLRRVADYAQVAGSAVIDAEVAAKGLDIMDVDSRGLD 249

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  I  +FGGGPVG++TI+A  SE    IED+ EPY+IQ GF++RTPRGR++ P
Sbjct: 250 MMDRKILECIIDHFGGGPVGVKTIAAACSEEVRTIEDIYEPYLIQCGFLKRTPRGRVVTP 309

Query: 322 IAWQHL 327
            A+QH+
Sbjct: 310 KAYQHI 315


>gi|150390103|ref|YP_001320152.1| Holliday junction DNA helicase B [Alkaliphilus metalliredigens
           QYMF]
 gi|172052478|sp|A6TQM5|RUVB_ALKMQ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|149949965|gb|ABR48493.1| Holliday junction DNA helicase RuvB [Alkaliphilus metalliredigens
           QYMF]
          Length = 336

 Score =  362 bits (930), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 172/308 (55%), Positives = 226/308 (73%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L ++ GQ      LK+FIEAAK R E LDHVL  GPPGLGKTTLA ++A E+ VN
Sbjct: 25  LRPKFLVDYIGQNSVKERLKIFIEAAKQRQEPLDHVLLYGPPGLGKTTLANIIANEMNVN 84

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGP I + GDLAA+LTNL   DVLFIDEIHRL+  VEE+LYPAMEDF LD+++G+G
Sbjct: 85  IKITSGPAIERPGDLAAILTNLAANDVLFIDEIHRLNRTVEEVLYPAMEDFALDIIIGKG 144

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSARS++++LS+FTLI ATTR G L++PL+DRFG+  +L  Y  + L  IV+R A++   
Sbjct: 145 PSARSIRLDLSQFTLIGATTRAGQLSSPLRDRFGVICKLELYNNKQLTAIVKRSARILDA 204

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + DE A EIA RSRGTPRIA RLLRRVRD+A+V     IT+ +A+ AL+ L +D +G D
Sbjct: 205 YIDDEGATEIASRSRGTPRIANRLLRRVRDYAQVKSDGRITKRVAEEALILLEVDSLGLD 264

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             D + +  +  NF GGPVG++T++A   E R+ IED+ EPY++Q GFI RTPRGR++M 
Sbjct: 265 NTDKKMIETMIYNFNGGPVGLDTLAATTGEERNTIEDVYEPYLLQMGFINRTPRGRIVMQ 324

Query: 322 IAWQHLGI 329
            A++H  I
Sbjct: 325 KAYEHFNI 332


>gi|94676565|ref|YP_588761.1| Holliday junction DNA helicase B [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
 gi|122988117|sp|Q1LTF3|RUVB_BAUCH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|94219715|gb|ABF13874.1| Holliday junction DNA helicase RuvB [Baumannia cicadellinicola str.
           Hc (Homalodisca coagulata)]
          Length = 335

 Score =  362 bits (930), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 175/307 (57%), Positives = 230/307 (74%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+ L ++ GQ      +K+FI+AAK R +ALDHVL  GPPGLGKTTLA ++A E+  + 
Sbjct: 23  RPKKLVDYIGQTNVREQMKIFIQAAKMRGDALDHVLLFGPPGLGKTTLANIIANEMEGSL 82

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGP 142
           RSTSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS ++EEILYPAMED++LD+++GEGP
Sbjct: 83  RSTSGPVLEKAGDLAAILTNLEPHDVLFIDEIHRLSPVIEEILYPAMEDYKLDIIIGEGP 142

Query: 143 SARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLA 202
           +ARS+KI +  FTL+ ATTR+G +T+PL+DRFGI  RL FY  +DL+ I+ R A    L+
Sbjct: 143 AARSIKIQIPPFTLVGATTRIGSITSPLRDRFGIVQRLEFYPTKDLQNIISRSAANLSLS 202

Query: 203 VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQ 262
           +TD    EIA R+RGTPRIA RLLRRVRDFAEV  A  IT  +A  AL  L +D  GF+ 
Sbjct: 203 ITDGGLSEIAKRARGTPRIALRLLRRVRDFAEVRAAGKITNNVAMNALNMLNVDTAGFNF 262

Query: 263 LDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPI 322
           +D + L +I   F GGPVG++ ++A + E R+ IED++EP++IQQGF+QRTPRGR+    
Sbjct: 263 MDRQLLLVIINKFLGGPVGLDNLAAAIGEERETIEDVLEPFLIQQGFLQRTPRGRIATAE 322

Query: 323 AWQHLGI 329
           A++H  +
Sbjct: 323 AYRHFSL 329


>gi|94264075|ref|ZP_01287874.1| Holliday junction DNA helicase RuvB [delta proteobacterium MLMS-1]
 gi|93455491|gb|EAT05681.1| Holliday junction DNA helicase RuvB [delta proteobacterium MLMS-1]
          Length = 352

 Score =  362 bits (930), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 185/328 (56%), Positives = 239/328 (72%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M   E L+S  +  +D+  + LRPR LE + GQ +   NL++ I AAK R EALDH LF 
Sbjct: 1   MNQEERLVSPVILDDDSPDADLRPRRLEYYIGQEQLKENLEIAIAAAKGRGEALDHTLFH 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           G PGLGKTTLA V+A E+G   R TSGPVI K GDLAA+LT+L++ DVLFIDEIHRL+ +
Sbjct: 61  GFPGLGKTTLAYVIANEMGAAIRVTSGPVIEKPGDLAAILTSLQEGDVLFIDEIHRLNHV 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILYPAMED++LDL++G+GP ARSVK++L RFTL+ ATTR GLLT PL+DRFG+ +RL
Sbjct: 121 VEEILYPAMEDYELDLVIGQGPGARSVKMSLPRFTLVGATTRTGLLTPPLRDRFGLALRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           +FY  E+L  IV R A L G+ + D  A EI  RSRGTPRIA RLLRR+RDFAEV     
Sbjct: 181 DFYSPEELVAIVHRSAGLLGVPLDDAGALEIGRRSRGTPRIANRLLRRLRDFAEVRGQGR 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           IT E+ADAAL    +D++GFD++D R L  +   F GGP+G+ET++  + E ++ +ED+ 
Sbjct: 241 ITAEVADAALNMQGVDQLGFDEMDRRILLALIDRFQGGPIGLETLATMVCEEKNTLEDVY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
           EP++IQ GF+ RTPRGR+    A+ H G
Sbjct: 301 EPFLIQAGFLIRTPRGRMATRAAYLHFG 328


>gi|126642623|ref|YP_001085607.1| Holliday junction DNA helicase RuvB [Acinetobacter baumannii ATCC
           17978]
          Length = 297

 Score =  362 bits (929), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 174/294 (59%), Positives = 223/294 (75%)

Query: 40  LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAAL 99
           +++FI AA+ R EALDH L  GPPGLGKTTLA ++ARE+G N +STSGPV+ +AGDLAA+
Sbjct: 1   MEIFIGAARGRGEALDHTLIFGPPGLGKTTLANIIAREMGGNLKSTSGPVLERAGDLAAM 60

Query: 100 LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA 159
           LTNLE+ DVLFIDEIHRLS ++EEILYPAMED+QLD+M+GEGP+ARS+K++L  FTL+AA
Sbjct: 61  LTNLEEGDVLFIDEIHRLSPVIEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVAA 120

Query: 160 TTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTP 219
           TTR GLLT+PL+DRFGI  RL FY +EDL  IV R A L  + +T E A E+A RSRGTP
Sbjct: 121 TTRAGLLTSPLRDRFGIVQRLEFYSVEDLTHIVSRSANLMDVPITVEGAEEVARRSRGTP 180

Query: 220 RIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGP 279
           RIA RLLRRVRD+A+V     +  E+A  AL  L +DK G D LD RYL+M+   F GGP
Sbjct: 181 RIANRLLRRVRDYAQVKGTGEVNHEMAQRALDMLNVDKAGLDTLDRRYLSMLLERFDGGP 240

Query: 280 VGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            G+E ++A ++E    +ED+IEPY+IQQG++ RT RGR+    ++   G+  P 
Sbjct: 241 AGVEALAAAMAEDSGTLEDVIEPYLIQQGYVMRTARGRIATNQSYLQFGMTPPE 294


>gi|325286769|ref|YP_004262559.1| Holliday junction ATP-dependent DNA helicase ruvB [Cellulophaga
           lytica DSM 7489]
 gi|324322223|gb|ADY29688.1| Holliday junction ATP-dependent DNA helicase ruvB [Cellulophaga
           lytica DSM 7489]
          Length = 340

 Score =  362 bits (929), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 185/321 (57%), Positives = 230/321 (71%), Gaps = 1/321 (0%)

Query: 9   SRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           S N S E+ DI   LRP + ++F GQ +   NLKVF+EAA  R EALDH LF GPPGLGK
Sbjct: 9   SENFSSEEFDIERALRPLSFDDFAGQDQVLENLKVFVEAANQRGEALDHTLFHGPPGLGK 68

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127
           TTLA ++A ELGV  + TSGPV+ K GDLA LLTNLE+RDVLFIDEIHRLS IVEE LY 
Sbjct: 69  TTLAHILANELGVGIKVTSGPVLDKPGDLAGLLTNLEERDVLFIDEIHRLSPIVEEYLYS 128

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           AMED+++D+M+  GP+ARSV+INL+ FTLI ATTR GLLT P++ RFGI  RL +Y  E 
Sbjct: 129 AMEDYKIDIMIESGPNARSVQINLNPFTLIGATTRSGLLTAPMRARFGIQSRLQYYTTEL 188

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           L TI +R A +  + +  EAA EIA RSRGTPRI   LLRRVRDFA++     I  EI+ 
Sbjct: 189 LSTIAERSADILNVPIDLEAAIEIAGRSRGTPRICNALLRRVRDFAQIKGNGKIDIEISR 248

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
             L  L +D  G D++D + LT I   F GGPVGI T++  +SE  + IE++ EP++IQQ
Sbjct: 249 FGLNALNVDAHGLDEMDNKILTTIIDKFKGGPVGITTLATAVSESAETIEEVYEPFLIQQ 308

Query: 308 GFIQRTPRGRLLMPIAWQHLG 328
           GFI RTPRGR +  +A++HLG
Sbjct: 309 GFIMRTPRGREVTELAYKHLG 329


>gi|332519996|ref|ZP_08396460.1| Holliday junction DNA helicase RuvB [Lacinutrix algicola 5H-3-7-4]
 gi|332044555|gb|EGI80749.1| Holliday junction DNA helicase RuvB [Lacinutrix algicola 5H-3-7-4]
          Length = 340

 Score =  362 bits (929), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 181/321 (56%), Positives = 234/321 (72%), Gaps = 1/321 (0%)

Query: 9   SRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           + N S E+ DI   LRP + ++FTGQ     NL+VF++AA  R EALDH LF GPPGLGK
Sbjct: 9   NENFSPEEFDIEKTLRPLSFDDFTGQDNVLENLQVFVQAANQRDEALDHTLFHGPPGLGK 68

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127
           TTLA ++A EL V  + TSGPV+ K GDLA LLTNL+DRDVLFIDEIHRLS IVEE LY 
Sbjct: 69  TTLANILANELNVGIKITSGPVLDKPGDLAGLLTNLDDRDVLFIDEIHRLSPIVEEYLYS 128

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           AMEDF++D+M+  GP+AR+V+INL+ FTL+ ATTR GLLT P++ RFGI  RL +Y  + 
Sbjct: 129 AMEDFKIDIMIESGPNARTVQINLNPFTLVGATTRSGLLTAPMRARFGIQSRLQYYSTDL 188

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           L TI+QR A++  + ++ EAA EIA RSRGTPRIA  LLRRVRDFA++    +I   IA 
Sbjct: 189 LSTIIQRSAQILNVPISMEAAIEIAGRSRGTPRIANALLRRVRDFAQIKGNGSIDIAIAK 248

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
            +L  L +D  G D++D + L+ I   F GGPVGI TI+  +SE  + +E++ EP++IQQ
Sbjct: 249 FSLEALNVDAYGLDEMDNKILSTIIDKFKGGPVGITTIATAVSESTETVEEVYEPFLIQQ 308

Query: 308 GFIQRTPRGRLLMPIAWQHLG 328
           GFI RTPRGR +  +A++HLG
Sbjct: 309 GFIMRTPRGREVTALAYEHLG 329


>gi|150026163|ref|YP_001296989.1| Holliday junction DNA helicase B [Flavobacterium psychrophilum
           JIP02/86]
 gi|166231492|sp|A6H1G3|RUVB_FLAPJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|149772704|emb|CAL44187.1| Holliday junction DNA helicase RuvB [Flavobacterium psychrophilum
           JIP02/86]
          Length = 340

 Score =  362 bits (929), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 179/307 (58%), Positives = 227/307 (73%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP + ++FTGQ +   NLK+F++AA  R EALDH LF GPPGLGKTTLA ++A ELGV 
Sbjct: 23  LRPLSFDDFTGQEQVLENLKIFVQAANLRGEALDHTLFHGPPGLGKTTLANILANELGVG 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGPV+ K GDLA LLTNL++RDVLFIDEIHRLS IVEE LY AMEDF++D+M+  G
Sbjct: 83  IKITSGPVLDKPGDLAGLLTNLDERDVLFIDEIHRLSPIVEEYLYSAMEDFKIDIMIESG 142

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARSV+INLS FTL+ ATTR GLLT P++ RFGI  RL +Y  E L TIVQR + +  +
Sbjct: 143 PNARSVQINLSPFTLVGATTRSGLLTAPMRARFGIQSRLQYYNAELLTTIVQRSSSILKM 202

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T EAA EIA RSRGTPRIA  +LRRVRDFA++    +I  EIA  AL  L +D  G D
Sbjct: 203 PITMEAAIEIAGRSRGTPRIANAMLRRVRDFAQIKGNGSIDIEIAKFALNALHVDAHGLD 262

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           ++D + L  I   F GGPVG+ T++  +SE  + IE++ EP++IQ+GFI RTPRGR +  
Sbjct: 263 EMDNKILNTIIDKFKGGPVGLSTLATAVSESSETIEEVYEPFLIQEGFIMRTPRGREVTE 322

Query: 322 IAWQHLG 328
            A++HLG
Sbjct: 323 KAYKHLG 329


>gi|310779513|ref|YP_003967846.1| Holliday junction DNA helicase subunit RuvB [Ilyobacter polytropus
           DSM 2926]
 gi|309748836|gb|ADO83498.1| Holliday junction DNA helicase subunit RuvB [Ilyobacter polytropus
           DSM 2926]
          Length = 333

 Score =  362 bits (929), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 181/329 (55%), Positives = 241/329 (73%), Gaps = 3/329 (0%)

Query: 2   MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MDR  +LS    + + DI   LRP+  +E+ GQ      + +FIEAAK R EA+DHVL  
Sbjct: 1   MDR--VLSAGEFENEVDIQKSLRPKRFDEYIGQDNLKQKMSIFIEAAKRRGEAVDHVLLY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA V+A E+GVN + TSGPV+ KAGDLAA+LT+LE+ D+LFIDEIHRL+  
Sbjct: 59  GPPGLGKTTLAGVIATEMGVNLKITSGPVLDKAGDLAAILTSLEENDILFIDEIHRLNTS 118

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILYPAMED +LD+++G+GPSARS++I L  FTLI ATTR GLL++PL+DRFG+  R+
Sbjct: 119 VEEILYPAMEDRELDIIIGKGPSARSIRIELPNFTLIGATTRAGLLSSPLRDRFGVVHRM 178

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           ++Y+ E+L  I+ RG  + G+ V  E A EIA RSRGTPRI+ RLL+RVRD+AE+     
Sbjct: 179 DYYKSEELIKIILRGGSILGVDVRLEGAEEIAFRSRGTPRISNRLLKRVRDYAEIRGDGV 238

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +T+ +A  A+  L ID  G D+LD   L  +  N+GGGPVGIET+S  L E R  +E++ 
Sbjct: 239 VTKPLAKEAMSLLGIDSFGLDELDREILGAVIENYGGGPVGIETLSLVLGEDRKTLEEVY 298

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           EPY+++ GFI+RT RGR++ P A++HL I
Sbjct: 299 EPYLVKIGFIKRTHRGRVVTPKAYEHLNI 327


>gi|160934126|ref|ZP_02081513.1| hypothetical protein CLOLEP_02989 [Clostridium leptum DSM 753]
 gi|156866799|gb|EDO60171.1| hypothetical protein CLOLEP_02989 [Clostridium leptum DSM 753]
          Length = 350

 Score =  362 bits (929), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 190/319 (59%), Positives = 226/319 (70%), Gaps = 1/319 (0%)

Query: 15  EDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           EDADI + LRPRTL E+ GQ +A  NL VFIEAAK R E+LDHVL  GPPGLGKTTLA +
Sbjct: 19  EDADIENPLRPRTLSEYIGQEKAKENLSVFIEAAKLRHESLDHVLLYGPPGLGKTTLAGI 78

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +A EL VN R TSGP I K GDLAALLTNL   DVLFIDEIHRLS  VEEILYPAMEDF 
Sbjct: 79  IANELNVNIRITSGPAIEKPGDLAALLTNLNSGDVLFIDEIHRLSRSVEEILYPAMEDFA 138

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           +D++ G+G  A S  + L +FTL+ ATTR G LT PL+DRFG+ +RL  Y  E+L TIV 
Sbjct: 139 IDIITGKGQMAASYHLPLPKFTLVGATTRAGQLTAPLRDRFGVVLRLEMYTPEELATIVS 198

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R AK+ G+    E A EIA RSRGTPRIA RLL+RVRDFA+V     IT E A  AL +L
Sbjct: 199 RSAKILGIETNQEGALEIASRSRGTPRIANRLLKRVRDFAQVMSDGVITYETAKVALDKL 258

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            ID++G D  D R L  + R + GGPVG+ET++A + E    IED+ EPY++Q GF+ RT
Sbjct: 259 EIDELGLDGNDRRMLETLIRFYKGGPVGLETLAAAIGEEAVTIEDVYEPYLMQIGFLSRT 318

Query: 314 PRGRLLMPIAWQHLGIDIP 332
           PRGR     A+ HLG+  P
Sbjct: 319 PRGRCATHAAYLHLGMTPP 337


>gi|296331681|ref|ZP_06874150.1| Holliday junction DNA helicase RuvB [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305675360|ref|YP_003867032.1| Holliday junction DNA helicase, ATP-dependent component [Bacillus
           subtilis subsp. spizizenii str. W23]
 gi|296151276|gb|EFG92156.1| Holliday junction DNA helicase RuvB [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305413604|gb|ADM38723.1| Holliday junction DNA helicase, ATP-dependent component [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 334

 Score =  362 bits (928), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 182/331 (54%), Positives = 234/331 (70%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD   + S   + E      LRP+ L ++ GQ +   NL+VFI+AAK R E LDHVL  G
Sbjct: 1   MDERLVSSEADNHESVIEQSLRPQNLAQYIGQHKVKENLRVFIDAAKMRQETLDHVLLYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA +VA E+GV  R+TSGP I + GDLAA+LT LE  DVLFIDEIHRL   +
Sbjct: 61  PPGLGKTTLASIVANEMGVELRTTSGPAIERPGDLAAILTALEPGDVLFIDEIHRLHRSI 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTRVGLLT+PL+DRFG+  RL 
Sbjct: 121 EEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRVGLLTSPLRDRFGVMSRLE 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y  E+L  IV R A +  + +   +A EIA RSRGTPR+A RLLRRVRDFA+V     I
Sbjct: 181 YYTQEELADIVTRTADVFEVEIDKPSALEIARRSRGTPRVANRLLRRVRDFAQVLGDSRI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T EI+  AL RL +D++G D +D + L  +   F GGPVG++TISA + E    IED+ E
Sbjct: 241 TEEISQDALERLQVDRLGLDHIDHKLLMGMIEKFNGGPVGLDTISATIGEEPHTIEDVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           PY++Q GFIQRTPRGR++ P  + H  ++ P
Sbjct: 301 PYLLQIGFIQRTPRGRIVTPAVYHHFQMEAP 331


>gi|167759025|ref|ZP_02431152.1| hypothetical protein CLOSCI_01372 [Clostridium scindens ATCC 35704]
 gi|167663432|gb|EDS07562.1| hypothetical protein CLOSCI_01372 [Clostridium scindens ATCC 35704]
          Length = 335

 Score =  362 bits (928), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 173/328 (52%), Positives = 243/328 (74%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M R  + + N+ ++    + LRP+ LE++ GQ +A   LK++IEAAKAR EALDHVLF G
Sbjct: 1   MSRRIITTENLEEDIKIENHLRPQMLEDYIGQEKAKETLKIYIEAAKARGEALDHVLFYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+ VN + TSGP I K G++AA+L NL++ DVLF+DEIHRL+  V
Sbjct: 61  PPGLGKTTLAGIIANEMNVNIKITSGPAIEKPGEMAAILNNLQEGDVLFVDEIHRLNRQV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMED+ +D+M+G+G SARS++++L +FTL+ ATTR G+LT PL+DRFG+  R+ 
Sbjct: 121 EEVLYPAMEDYAIDIMIGKGASARSIRLDLPKFTLVGATTRAGMLTAPLRDRFGVVNRME 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY + +LKTI+ R A++  + + +  A  +A RSRGTPR+A RLL+RVRDFA+V +   I
Sbjct: 181 FYTVGELKTIILRSARVLEVGIDERGAYALARRSRGTPRLANRLLKRVRDFAQVKYDGYI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T E+A+ AL  L +DK G DQ D   L ++   F GGPVG++T++A + E    IED+ E
Sbjct: 241 TEEVANYALDLLDVDKEGLDQTDRGLLLIMIEKFQGGPVGLDTLAAAIGEDAGTIEDVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           PY+++ GFIQRTPRGR++   A++HLGI
Sbjct: 301 PYLLKNGFIQRTPRGRVVTDSAYRHLGI 328


>gi|157693177|ref|YP_001487639.1| Holliday junction DNA helicase RuvB [Bacillus pumilus SAFR-032]
 gi|167012667|sp|A8FFR2|RUVB_BACP2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|157681935|gb|ABV63079.1| crossover junction endoribonuclease subunit B [Bacillus pumilus
           SAFR-032]
          Length = 334

 Score =  362 bits (928), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 182/333 (54%), Positives = 239/333 (71%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD   + +   + E A    LRP+TL ++ GQ +   NL VFIEAA+ R E LDHVL  G
Sbjct: 1   MDERLVSTEADNHESAIEQSLRPQTLSQYIGQQKVKDNLSVFIEAARMRQETLDHVLLYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+ V  R+TSGP I + GDLAA+LT+LE  DVLFIDEIHRL   +
Sbjct: 61  PPGLGKTTLASIIANEMNVQLRTTSGPAIERPGDLAAILTSLEPGDVLFIDEIHRLQRSI 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMEDF LD+++G+G +ARSV+++L  FTL+ ATTRVGLLT PL+DRFG+  RL 
Sbjct: 121 EEVLYPAMEDFCLDIVIGKGDTARSVRLDLPPFTLVGATTRVGLLTAPLRDRFGVHARLE 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +YE  DL  IV R A+L  + +   +A EIA RSRGTPR+A RLLRRVRDFA+V    +I
Sbjct: 181 YYEQRDLAHIVSRTAELFEIGIDLRSAEEIARRSRGTPRVANRLLRRVRDFAQVLGNHSI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T +IA+ AL RL +DK+G D +D + L  +   F GGPVG++TISA + E    IED+ E
Sbjct: 241 TEDIAEDALERLQVDKLGLDHIDHKLLLSMIEKFRGGPVGLDTISATIGEESHTIEDVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           PY++Q GF+QRTPRGR++   A++H  +++P R
Sbjct: 301 PYLLQIGFLQRTPRGRVVTREAYEHFQMEVPIR 333


>gi|152996212|ref|YP_001341047.1| Holliday junction DNA helicase RuvB [Marinomonas sp. MWYL1]
 gi|189046036|sp|A6VXD3|RUVB_MARMS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|150837136|gb|ABR71112.1| Holliday junction DNA helicase RuvB [Marinomonas sp. MWYL1]
          Length = 337

 Score =  362 bits (928), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 177/333 (53%), Positives = 237/333 (71%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++++ ++S  +   D  +   +RP+ L E+ GQ      +++FI+AA+ R E LDH L 
Sbjct: 1   MIEQDRIISAELKGNDRQVDRAIRPQALAEYIGQPVVREQMEIFIQAARQRGEPLDHTLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++  E+G   R+TSGPV+ +AGDLAALLTNL + D+LFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIIGNEMGAEVRTTSGPVLERAGDLAALLTNLNEGDILFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            +EE+LYPAMED+QLD+M+GEGP+ARS+KI L  FTL+ ATTR GLLT+PL+DRFGI  R
Sbjct: 121 AIEEVLYPAMEDYQLDIMIGEGPAARSIKIELPPFTLVGATTRAGLLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++E L TIV R A   G+ +      E+A RSRGTPRIA RLLRRVRD A+V+   
Sbjct: 181 LEFYDVESLTTIVARSAGKMGVELDQSGCFEVARRSRGTPRIANRLLRRVRDVAQVSGEV 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            + +++A  AL  L++D  GFD LD R L  +   F G PVG++++SA L E +D IED+
Sbjct: 241 LVGQKVAQRALDMLSVDSQGFDHLDRRMLLTMIEKFDGRPVGLDSVSAALGEDKDTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           IEP++IQQGFI RTPRGR +   A++H    +P
Sbjct: 301 IEPFLIQQGFIIRTPRGRQVTKRAYEHFNYQLP 333


>gi|302380554|ref|ZP_07269019.1| Holliday junction DNA helicase RuvB [Finegoldia magna
           ACS-171-V-Col3]
 gi|303233656|ref|ZP_07320310.1| Holliday junction DNA helicase RuvB [Finegoldia magna BVS033A4]
 gi|302311497|gb|EFK93513.1| Holliday junction DNA helicase RuvB [Finegoldia magna
           ACS-171-V-Col3]
 gi|302495090|gb|EFL54842.1| Holliday junction DNA helicase RuvB [Finegoldia magna BVS033A4]
          Length = 335

 Score =  362 bits (928), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 178/315 (56%), Positives = 229/315 (72%), Gaps = 1/315 (0%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           ED D +L RP+ + ++ GQ +    L +FIEAAK R E LDH L  GPPGLGKTTLA ++
Sbjct: 18  EDIDFNL-RPKWMSDYIGQDKVKKKLSIFIEAAKNRNEPLDHALLYGPPGLGKTTLAHII 76

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A E+GVN R TSGP I K  DLA++LTNL+  DVLFIDEIHR++  VEEILYPAMED+ L
Sbjct: 77  ANEMGVNLRVTSGPAIEKPSDLASILTNLQKDDVLFIDEIHRINRSVEEILYPAMEDYAL 136

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D++VG+GPSARS++I+L +FTLI ATTR G LT PL+DRFG+ + L  Y+IE LK IV R
Sbjct: 137 DIIVGKGPSARSLRIDLEKFTLIGATTRSGQLTGPLRDRFGVLLNLELYDIESLKKIVTR 196

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A + G+ + +E A EIA RSRGTPRIA RLL+RVRD+AEV    TIT+EI++  L  L 
Sbjct: 197 SAGVLGIGIDEEGAMEIARRSRGTPRIANRLLKRVRDYAEVRADGTITQEISNRGLNLLE 256

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +DK G D +D + +  +  NF GGPVG++TI+A   E R  IED+ EPY++Q GFI RT 
Sbjct: 257 VDKCGLDYVDRKIIMTMINNFDGGPVGVDTIAAATGEERITIEDVYEPYLLQIGFINRTS 316

Query: 315 RGRLLMPIAWQHLGI 329
           RGR++   A++H  I
Sbjct: 317 RGRIVTDKAYKHFNI 331


>gi|258405865|ref|YP_003198607.1| Holliday junction DNA helicase RuvB [Desulfohalobium retbaense DSM
           5692]
 gi|257798092|gb|ACV69029.1| Holliday junction DNA helicase RuvB [Desulfohalobium retbaense DSM
           5692]
          Length = 322

 Score =  362 bits (928), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 173/308 (56%), Positives = 234/308 (75%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  ++EF GQ +  +NL+VF+++A+ R +A+DH L  G PGLGKTTLAQ++A E+GVN
Sbjct: 13  VRPSRMDEFIGQDDLRANLQVFLQSARGRGKAMDHTLLFGQPGLGKTTLAQIIATEMGVN 72

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
             STSGPV+ ++GDLAA+LTNL+  DVLF+DEIHR+   VEE+LYPA+EDF+LDL+VG+G
Sbjct: 73  LVSTSGPVMERSGDLAAILTNLQRYDVLFVDEIHRMPASVEEVLYPALEDFKLDLVVGQG 132

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P AR+VKI+L  FTL+ ATTR+GLL++PL+DRFG+  RL +Y  EDL  IVQR A++  +
Sbjct: 133 PGARTVKIDLEPFTLVGATTRMGLLSSPLRDRFGVMCRLEYYTSEDLARIVQRSAQIQAI 192

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
           A++ + A EI  RSRGTPRIA RLLRRVRDFA V  A+ I  E A AAL RL +D++G D
Sbjct: 193 AISPDGALEIGRRSRGTPRIANRLLRRVRDFAMVQGAEHIGTEEAAAALERLDVDQLGLD 252

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   FGGGPVG++T++    E    +ED+ EPY+IQ GF++RTPRGR+L  
Sbjct: 253 MMDRKILQAMVEKFGGGPVGVKTLAVACCEEVRTLEDIYEPYLIQSGFLKRTPRGRVLTA 312

Query: 322 IAWQHLGI 329
            A++HL I
Sbjct: 313 KAYEHLKI 320


>gi|153955758|ref|YP_001396523.1| Holliday junction DNA helicase RuvB [Clostridium kluyveri DSM 555]
 gi|219856125|ref|YP_002473247.1| hypothetical protein CKR_2782 [Clostridium kluyveri NBRC 12016]
 gi|189046026|sp|A5N206|RUVB_CLOK5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|254767421|sp|B9E5Q8|RUVB_CLOK1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|146348616|gb|EDK35152.1| RuvB [Clostridium kluyveri DSM 555]
 gi|219569849|dbj|BAH07833.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 350

 Score =  361 bits (927), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 177/306 (57%), Positives = 229/306 (74%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP++L+E+ GQ +    LK+FIEAAK R EALDHVLF GPPGLGKTTLA ++A E+G N
Sbjct: 21  LRPKSLKEYIGQRKVKEKLKIFIEAAKNRKEALDHVLFYGPPGLGKTTLANIIALEMGGN 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGP I +AGDLAA+LT L+DRDVLFIDEIHRL+  VEEILYPAMED+ LD+++G+G
Sbjct: 81  LKITSGPAIERAGDLAAILTGLDDRDVLFIDEIHRLNRSVEEILYPAMEDYALDIVIGKG 140

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            S +S++++L RFTLI ATTRVGLLT PL+DRFG+   ++FY+ E+L  IV R   +  +
Sbjct: 141 ASTKSIRLDLPRFTLIGATTRVGLLTAPLRDRFGVLCPMDFYDQEELSEIVVRSCNILKI 200

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  EA+ EI  RSRGTPRIA RLL+RVRD++EV    TI  + + AAL  L +DK GFD
Sbjct: 201 RIEPEASVEIGKRSRGTPRIANRLLKRVRDYSEVKGNGTIDLKTSKAALELLEVDKEGFD 260

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  I  NF GGPVGIET++  + E  D IED+ EPY++Q+GFI RTPRGR+   
Sbjct: 261 SIDNKILRAIIDNFNGGPVGIETLAYFIGEELDTIEDVYEPYLLQKGFIIRTPRGRIASD 320

Query: 322 IAWQHL 327
            A++H 
Sbjct: 321 SAYKHF 326


>gi|15895552|ref|NP_348901.1| Holliday junction DNA helicase RuvB [Clostridium acetobutylicum
           ATCC 824]
 gi|20140171|sp|Q97GT1|RUVB_CLOAB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|15025289|gb|AAK80241.1|AE007729_8 Holliday junction specific DNA helicase, subunit ruvB [Clostridium
           acetobutylicum ATCC 824]
 gi|325509701|gb|ADZ21337.1| Holliday junction DNA helicase B [Clostridium acetobutylicum EA
           2018]
          Length = 349

 Score =  361 bits (927), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 177/328 (53%), Positives = 238/328 (72%), Gaps = 1/328 (0%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD   L S N+ ++ A+ +L RP+ L E+ GQ +    + +FI AAK R EALDHVLF G
Sbjct: 1   MDDRILTSVNLEEDSAEYNL-RPQKLNEYIGQSKVKEKMDIFIRAAKKRGEALDHVLFYG 59

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A+E+G N + TSGP I +AGDLAA+LT L + DVLFIDEIHRL+  V
Sbjct: 60  PPGLGKTTLANIIAKEMGGNLKVTSGPAIERAGDLAAILTGLSEYDVLFIDEIHRLNRSV 119

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILYPAMED+ LD+++G+G +A+S++++L +FTLI ATTRVGLLT PL+DRFG+   + 
Sbjct: 120 EEILYPAMEDYALDIIIGKGAAAKSIRLDLPKFTLIGATTRVGLLTAPLRDRFGVLCPME 179

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY  E+LK I+ R + +  + + ++AA EIAMRSRGTPRIA RLL+RVRD+A+V     +
Sbjct: 180 FYNDEELKEIIVRSSSILDIDIDEDAALEIAMRSRGTPRIANRLLKRVRDYADVKGRGIV 239

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
             + A  AL  L +D  GFD +D + +  I  NF GGPVGIET+S  + E  D IED+ E
Sbjct: 240 NLDSAKKALNLLEVDDEGFDSIDNKIIQAIVNNFAGGPVGIETLSYFVGEEIDTIEDVYE 299

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           PY++Q+GFI RTPRGR+    A++HL +
Sbjct: 300 PYLLQKGFIMRTPRGRMATKKAYEHLKV 327


>gi|257784696|ref|YP_003179913.1| Holliday junction DNA helicase RuvB [Atopobium parvulum DSM 20469]
 gi|257473203|gb|ACV51322.1| Holliday junction DNA helicase RuvB [Atopobium parvulum DSM 20469]
          Length = 355

 Score =  361 bits (927), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 176/311 (56%), Positives = 234/311 (75%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+TL+E+ GQ    SNL+V IEAAK+R E LDHV+F GPPGLGKTTLA V+A E+G  
Sbjct: 43  LRPKTLDEYLGQERVKSNLRVLIEAAKSRNEPLDHVIFSGPPGLGKTTLAGVLAGEMGSK 102

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
             +TSGP I +AGDLAA+LTNLE+ D+LF+DEIHRL+  VEEILYPAMEDF LD+++G+G
Sbjct: 103 LHTTSGPAIERAGDLAAILTNLEEGDILFVDEIHRLNHQVEEILYPAMEDFFLDIVIGKG 162

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+++++ RFTL+AATTR GLLT PL+DRFGI  RL++Y + +L+TIV R A +  +
Sbjct: 163 PAARSIRLDIPRFTLVAATTRTGLLTGPLRDRFGISYRLDYYTVSELQTIVMRSANILDV 222

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            V ++ A EIA RSRGTPR+A RLL+RVRD+A+V    TIT ++A  AL    ID++G D
Sbjct: 223 EVDEQGAAEIASRSRGTPRLANRLLKRVRDYAQVKAEGTITWQVASEALSFFEIDELGLD 282

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D+R L  +   F G PVG+ TI++ +SE    +ED+ EPY++QQG I RTP+GR    
Sbjct: 283 VMDVRVLRALCETFRGRPVGLTTIASAVSEDPSTLEDVYEPYLLQQGLIIRTPQGRQATH 342

Query: 322 IAWQHLGIDIP 332
            A+ HL I +P
Sbjct: 343 AAFDHLRIPVP 353


>gi|313888445|ref|ZP_07822112.1| Holliday junction DNA helicase RuvB [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845474|gb|EFR32868.1| Holliday junction DNA helicase RuvB [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 333

 Score =  361 bits (927), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 177/329 (53%), Positives = 235/329 (71%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M++  L+   +   DA    LRP+ LEE+ GQ +   NLK+FIEAAK R+E LDH L  G
Sbjct: 1   MEKNRLVEPELIDGDAREVSLRPKWLEEYIGQEKVVKNLKIFIEAAKNRSEPLDHTLLSG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+GVN + TSGP I K GDLA++LTNL + DVLFIDEIHRL+  V
Sbjct: 61  PPGLGKTTLAGIIANEMGVNLKVTSGPAIEKQGDLASILTNLNNDDVLFIDEIHRLNKSV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILYPAMED  LD+++G+GPSARS++++L+ FTLI ATTR G+LT+PL+DRFG+ ++L+
Sbjct: 121 EEILYPAMEDHALDIIIGKGPSARSIRLDLAPFTLIGATTRAGMLTSPLRDRFGVMLKLD 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
            Y+ + L  I+ R AK+  + + +E A EIA RSRGTPRIA RLL+RVRD+AEV     I
Sbjct: 181 LYDTKSLVEIIMRSAKILNVPIEEEGALEIARRSRGTPRIANRLLKRVRDYAEVKEGGVI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T ++A   L  L IDK G D +D R +  +   F G PVGI+ ISA + E +  +ED+ E
Sbjct: 241 TTKVAIKGLNLLEIDKFGLDNIDRRIILTMIEKFNGRPVGIDAISAAIGEDKGTVEDVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           PY++Q GFI RTPRGR+    A+ H G++
Sbjct: 301 PYLMQIGFIIRTPRGRMTTKRAYDHFGLE 329


>gi|254796930|ref|YP_003081767.1| holliday junction DNA helicase RuvB [Neorickettsia risticii str.
           Illinois]
 gi|254590179|gb|ACT69541.1| holliday junction DNA helicase RuvB [Neorickettsia risticii str.
           Illinois]
          Length = 331

 Score =  361 bits (927), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 167/307 (54%), Positives = 235/307 (76%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+++++F GQ     NL+VFI++A+ R ++LDHVLF GPPGLGKTTLA +++ EL   
Sbjct: 17  LRPKSIKKFVGQKRVIENLQVFIDSAQKRNDSLDHVLFCGPPGLGKTTLAHIISNELESR 76

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
             +T+GP+++KAGD+AA+LTNL   D+LFIDEIHRL   VEE+LYPAMED+ LDL+VG+G
Sbjct: 77  IHTTAGPLLSKAGDIAAILTNLHKNDILFIDEIHRLPSAVEEVLYPAMEDYHLDLIVGDG 136

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+A+S++INL++FTL+AATTRVG+L+NPL+DRFGI +RL+FY + +L  ++Q+ A+   +
Sbjct: 137 PAAKSIRINLAKFTLVAATTRVGMLSNPLRDRFGITLRLDFYTVNELLQLLQQAAERLSV 196

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + + A  E+A RSRGTPRIA RLL+R+RDF EV+    IT E AD AL ++ +D+ G D
Sbjct: 197 NIENGAMIELAKRSRGTPRIALRLLKRMRDFLEVSDFDVITPEFADLALNKMEVDQFGLD 256

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           +LD  Y+  IA N+   PVG++TI+A +SE  D+IE+LIEPY+I+ GF+ RT RGR L  
Sbjct: 257 KLDYTYMHFIAENYSDNPVGVKTIAAAISEKEDSIEELIEPYLIKIGFLNRTQRGRRLTR 316

Query: 322 IAWQHLG 328
            A  +L 
Sbjct: 317 KALDYLS 323


>gi|311069259|ref|YP_003974182.1| Holliday junction DNA helicase RuvB [Bacillus atrophaeus 1942]
 gi|310869776|gb|ADP33251.1| Holliday junction DNA helicase RuvB [Bacillus atrophaeus 1942]
          Length = 334

 Score =  361 bits (927), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 183/331 (55%), Positives = 235/331 (70%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD   + S   + E A    LRP++L ++ GQ +   NL+VFI+AAK R E LDHVL  G
Sbjct: 1   MDERLVSSEADNHESAIEQSLRPQSLVQYIGQKKVKENLRVFIDAAKMREETLDHVLLYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA +VA E+GV  R+TSGP I + GDLAA+LT LE  DVLFIDEIHRL   +
Sbjct: 61  PPGLGKTTLASIVANEMGVEMRTTSGPAIERPGDLAAILTALEPGDVLFIDEIHRLHRSI 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTRVGLLT PL+DRFG+  RL 
Sbjct: 121 EEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRVGLLTAPLRDRFGVLSRLE 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y  E+L  IV R A L  + +   +A EIA RSRGTPR+A RLLRRVRDFA+V     I
Sbjct: 181 YYTQEELSDIVVRTADLFEVEIDKPSALEIARRSRGTPRVANRLLRRVRDFAQVLGDSRI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T +IA  AL RL +D++G D +D + L  +   F GGPVG++TISA + E    IED+ E
Sbjct: 241 TDDIAQDALERLQVDRLGLDHIDHKLLMGMIEKFSGGPVGLDTISATIGEEPHTIEDVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           PY++Q GF+QRTPRGR++ P  + H  ++ P
Sbjct: 301 PYLLQIGFLQRTPRGRIVTPAVYHHFNMEAP 331


>gi|254282411|ref|ZP_04957379.1| Holliday junction DNA helicase RuvB [gamma proteobacterium NOR51-B]
 gi|219678614|gb|EED34963.1| Holliday junction DNA helicase RuvB [gamma proteobacterium NOR51-B]
          Length = 352

 Score =  361 bits (927), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 185/335 (55%), Positives = 248/335 (74%), Gaps = 2/335 (0%)

Query: 1   MMDREGLLSRNV--SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M++ + L++ N   S E+A    +RP+TL ++ GQ      +++F+ AAK R E LDH L
Sbjct: 1   MIETDRLIAANPEGSNEEAVDRAIRPKTLADYLGQRVVREQMEIFLSAAKGRGEPLDHTL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA ++A E+GV+ ++TSGPV+ KAGD+AAL+TNLE  DVLFIDEIHRLS
Sbjct: 61  IFGPPGLGKTTLASIIAHEMGVSLKTTSGPVLEKAGDIAALMTNLEPGDVLFIDEIHRLS 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
             VEE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ ATTR GLLT+PL+DRFGI  
Sbjct: 121 PYVEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGLLTSPLRDRFGIVQ 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           RL FYE++DL  IV R   +  +++ ++ A EIA R+RGTPRIA RLLRRVRD+AEV   
Sbjct: 181 RLEFYEVDDLTRIVLRSGTILSISLDEQGAREIARRARGTPRIANRLLRRVRDYAEVKAD 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             IT ++A  AL  L +D++G D LD R L M+   F GGPVGI++++A LSE R  +ED
Sbjct: 241 GAITADVAARALDMLNVDQLGLDHLDRRLLLMLIEKFDGGPVGIDSLAAALSEERGTLED 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           ++EPY+IQQG+I RTPRGR++   A+ H G+  P 
Sbjct: 301 VLEPYLIQQGYIIRTPRGRMVTRNAYAHFGLRPPE 335


>gi|308174475|ref|YP_003921180.1| Holliday junction DNA helicase, ATP-dependent component [Bacillus
           amyloliquefaciens DSM 7]
 gi|307607339|emb|CBI43710.1| Holliday junction DNA helicase, ATP-dependent component [Bacillus
           amyloliquefaciens DSM 7]
 gi|328554395|gb|AEB24887.1| Holliday junction DNA helicase RuvB [Bacillus amyloliquefaciens
           TA208]
 gi|328912800|gb|AEB64396.1| Holliday junction DNA helicase, ATP-dependent component [Bacillus
           amyloliquefaciens LL3]
          Length = 334

 Score =  361 bits (927), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 183/331 (55%), Positives = 235/331 (70%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD   + S   S E      LRP+ L ++ GQ +   NL+VFI+AAK R E LDHVL  G
Sbjct: 1   MDERLVSSEADSHESIIEQSLRPQNLAQYIGQQKVKENLRVFIDAAKMRQETLDHVLLYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA +VA E+GV  R+TSGP I + GDLAA+LT LE  DVLFIDEIHRL+  +
Sbjct: 61  PPGLGKTTLASIVANEMGVEMRTTSGPAIERPGDLAAILTALEPGDVLFIDEIHRLNRSI 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTRVGLLT PL+DRFG+  RL 
Sbjct: 121 EEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRVGLLTAPLRDRFGVLSRLE 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y  E+L  IV R A++  + + +  A EIA RSRGTPR+A RLLRRVRDFA+V     I
Sbjct: 181 YYTQEELTDIVSRTAEVFEVEIEEAPALEIARRSRGTPRVANRLLRRVRDFAQVLGDSRI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T EIA  AL RL +D +G D +D + L  +   F GGPVG++TISA + E    IED+ E
Sbjct: 241 TEEIAHDALERLQVDALGLDHIDHKLLMGMIEKFSGGPVGLDTISATIGEEPHTIEDVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           PY++Q GF+QRTPRGR++ P  ++H  ++ P
Sbjct: 301 PYLLQIGFLQRTPRGRVVTPAVYEHFRLEAP 331


>gi|160892585|ref|ZP_02073375.1| hypothetical protein CLOL250_00114 [Clostridium sp. L2-50]
 gi|156865626|gb|EDO59057.1| hypothetical protein CLOL250_00114 [Clostridium sp. L2-50]
          Length = 335

 Score =  361 bits (926), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 172/309 (55%), Positives = 223/309 (72%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L+E+ GQ +   NLK+FIEAAK R E LDH+L  GPPGLGKTTLA +VA E+GVN
Sbjct: 23  LRPKYLDEYIGQNKVKENLKIFIEAAKRRNEPLDHLLLYGPPGLGKTTLASIVANEMGVN 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGP I K G+LAA+L NL + D+LFIDEIHRL+  VEE+LYPAMEDF +D+++G+G
Sbjct: 83  IKITSGPAIEKPGELAAILNNLSENDILFIDEIHRLNSQVEEVLYPAMEDFAIDVVIGKG 142

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
             ARS++++L +FTLI ATTR G+LT PL+DRFG+  RL FY  E+LK IV R   + G+
Sbjct: 143 AGARSIRLDLPKFTLIGATTRAGMLTAPLRDRFGMVDRLEFYSPEELKQIVIRSGDVLGV 202

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
              D  A EIA RSRGTPR+A RLL+R RDFA+V H   I  E+A  AL +L +D MG D
Sbjct: 203 ETDDAGALEIAKRSRGTPRLANRLLKRCRDFAQVCHNGCIDYEVAKTALDKLEVDSMGLD 262

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             D   L  +   FGGGPVG++T++A + E    IED+ EPY+I+ GFI RTPRGR++  
Sbjct: 263 NTDRNILMTMIEKFGGGPVGLDTLAAAIGEDSGTIEDVYEPYLIKNGFINRTPRGRVVTE 322

Query: 322 IAWQHLGID 330
             ++H G+D
Sbjct: 323 RCYKHFGLD 331


>gi|86140751|ref|ZP_01059310.1| Holliday junction DNA helicase RuvB [Leeuwenhoekiella blandensis
           MED217]
 gi|85832693|gb|EAQ51142.1| Holliday junction DNA helicase RuvB [Leeuwenhoekiella blandensis
           MED217]
          Length = 340

 Score =  361 bits (926), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 184/316 (58%), Positives = 230/316 (72%), Gaps = 1/316 (0%)

Query: 13  SQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           S E+ DI   LRP + ++FTGQ +   NL++F++AA  R EALDH LF GPPGLGKTTLA
Sbjct: 13  SHEEYDIERALRPLSFDDFTGQEQVIENLEIFVQAANGRGEALDHTLFHGPPGLGKTTLA 72

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            ++A ELGVN + TSGPV+ K GDLA LLTNLE+RDVLFIDEIHRLS IVEE LY AMED
Sbjct: 73  NILANELGVNIKVTSGPVLDKPGDLAGLLTNLEERDVLFIDEIHRLSPIVEEYLYSAMED 132

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F++D+M+  GP+AR+V+I L+ FTLI ATTR GLLT P++ RFGI  RL +Y  E L TI
Sbjct: 133 FKIDIMIESGPNARTVQITLNPFTLIGATTRSGLLTAPMRARFGISSRLQYYNTELLTTI 192

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           VQR A++  + +  EAA EIA RSRGTPRIA  LLRRVRDFA++    TI  EIA  +L 
Sbjct: 193 VQRSAEILNVPIHMEAAIEIAGRSRGTPRIANALLRRVRDFAQIKGNGTIDIEIARFSLK 252

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L +D  G D++D + L  I   F GGPVGI T++  +SE  + IE++ EP++IQQGFI 
Sbjct: 253 ALNVDAHGLDEMDNKILATIIDKFKGGPVGITTLATAVSESAETIEEVYEPFLIQQGFIV 312

Query: 312 RTPRGRLLMPIAWQHL 327
           RTPRGR +   A+ HL
Sbjct: 313 RTPRGREVTEAAYTHL 328


>gi|189501748|ref|YP_001957465.1| Holliday junction DNA helicase RuvB [Candidatus Amoebophilus
           asiaticus 5a2]
 gi|238692303|sp|B3ER84|RUVB_AMOA5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|189497189|gb|ACE05736.1| hypothetical protein Aasi_0299 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 342

 Score =  361 bits (926), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 177/313 (56%), Positives = 229/313 (73%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP    +FTGQ +  +NLK+F++AAK R E LDHVL  GPPGLGKTTLA ++A ELG N
Sbjct: 24  LRPHVFADFTGQEKIVANLKIFVQAAKERKEPLDHVLLHGPPGLGKTTLAHIIANELGAN 83

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGPV+ K GDLA LLTNL   DVLFIDEIHRL+ IVEE LY AMEDF++D+M+  G
Sbjct: 84  IRITSGPVLDKPGDLAGLLTNLGPYDVLFIDEIHRLNPIVEEYLYTAMEDFKIDIMLDSG 143

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSARSV++NL+ FTLI ATTR GLLT+PL+ RFGI  RL +Y++  L  IV+R +++  +
Sbjct: 144 PSARSVQLNLNPFTLIGATTRSGLLTSPLRARFGINTRLAYYDVTLLTQIVKRSSQILNV 203

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + + AA E+A RSRGTPRIA  LLRR RDFA++  + TIT++IA  AL  L +D+ G D
Sbjct: 204 PIEESAAYELARRSRGTPRIANTLLRRTRDFAQITGSGTITQQIAQMALKALDVDEDGLD 263

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           ++D R L+ I   F GGPVGI TI+   SE  + IE++ EP++IQ+G++ RTPRGR   P
Sbjct: 264 EMDNRILSTIIEKFHGGPVGISTIATACSEESETIEEVYEPFLIQEGYLHRTPRGREATP 323

Query: 322 IAWQHLGIDIPHR 334
            A++HL +  P R
Sbjct: 324 KAYKHLKLAPPQR 336


>gi|154686914|ref|YP_001422075.1| Holliday junction DNA helicase RuvB [Bacillus amyloliquefaciens
           FZB42]
 gi|166231462|sp|A7Z768|RUVB_BACA2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|154352765|gb|ABS74844.1| RuvB [Bacillus amyloliquefaciens FZB42]
          Length = 334

 Score =  361 bits (926), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 184/333 (55%), Positives = 234/333 (70%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD   + S   S E      LRP+ L ++ GQ +   NL+VFI+AAK R E LDHVL  G
Sbjct: 1   MDERLVSSEADSHESIIEQSLRPQNLAQYIGQKKVKENLRVFIDAAKMRQETLDHVLLYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA +VA E+GV  R+TSGP I + GDLAA+LT LE  DVLFIDEIHRL+  +
Sbjct: 61  PPGLGKTTLASIVANEMGVEMRTTSGPAIERPGDLAAILTALEPGDVLFIDEIHRLNRSI 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTRVGLLT PL+DRFG+  RL 
Sbjct: 121 EEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRVGLLTAPLRDRFGVLSRLE 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y  E+L  IV R A +  + +    A EIA RSRGTPR+A RLLRRVRDFA+V     I
Sbjct: 181 YYTQEELTDIVSRTADVFEVDIEKAPALEIARRSRGTPRVANRLLRRVRDFAQVLGDSRI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T EIA  AL RL +D +G D +D + L  +   F GGPVG++TISA + E    IED+ E
Sbjct: 241 TEEIAHDALERLQVDALGLDHIDHKLLMGMIEKFSGGPVGLDTISATIGEEPHTIEDVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           PY++Q GF+QRTPRGR++ P  ++H  ++ P R
Sbjct: 301 PYLLQIGFLQRTPRGRVVTPAVYEHFRLEAPAR 333


>gi|225181938|ref|ZP_03735372.1| Holliday junction DNA helicase RuvB [Dethiobacter alkaliphilus AHT
           1]
 gi|225167378|gb|EEG76195.1| Holliday junction DNA helicase RuvB [Dethiobacter alkaliphilus AHT
           1]
          Length = 341

 Score =  361 bits (926), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 179/329 (54%), Positives = 243/329 (73%), Gaps = 1/329 (0%)

Query: 2   MDREGLLS-RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD E ++S R+ + +D   S LRPRTL E+ GQ +  +NL+VFI+AA+ R ++LDHVL  
Sbjct: 1   MDEERIISSRSRTDDDWQDSSLRPRTLGEYIGQEKLKTNLRVFIDAARQRGDSLDHVLLY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A ELGVN RSTSGP I + GDLAA+LTNL   DVLFIDEIHRL   
Sbjct: 61  GPPGLGKTTLASIIAGELGVNLRSTSGPAIERPGDLAAILTNLAPYDVLFIDEIHRLHRT 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDF LD+++G+GPSARS++++L  FT+I ATTR G L++PL+DRFG+  RL
Sbjct: 121 VEEVLYPAMEDFALDIIIGKGPSARSLRLDLPPFTMIGATTRAGALSSPLRDRFGVVSRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY   +L+ IV+R A +  + + +E A  IA  SRGTPR+A RLL+RVRDFA++    T
Sbjct: 181 EFYRDGELQEIVRRAAGILQVEIDEEGALAIAKSSRGTPRVANRLLKRVRDFAQIKADNT 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           IT ++A  A+  L +D +G D++D   L  +   F GGPVG++T++A +SE  + IED+ 
Sbjct: 241 ITGDVARLAMDMLEVDALGLDEVDRHLLRTMVEKFSGGPVGLDTLAAAISEETETIEDVY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           EPY++Q GF+QRTPRGR +  +A +HLG+
Sbjct: 301 EPYLMQIGFLQRTPRGRCVTRLACEHLGL 329


>gi|261368083|ref|ZP_05980966.1| holliday junction DNA helicase RuvB [Subdoligranulum variabile DSM
           15176]
 gi|282570073|gb|EFB75608.1| holliday junction DNA helicase RuvB [Subdoligranulum variabile DSM
           15176]
          Length = 350

 Score =  361 bits (926), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 182/333 (54%), Positives = 240/333 (72%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           +D   L+S +    DA+   LRP+TL+++ GQ +A  NL+V++ AA+ R E +DH+L  G
Sbjct: 7   VDPSRLVSPDALPADAEEISLRPKTLDDYVGQEKAKGNLRVYLRAAQQRGEPMDHILLYG 66

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA +VA+E+GV  R TSGP I K GDLAALLTNL++ DVLFIDEIHRLS  V
Sbjct: 67  PPGLGKTTLAGIVAQEMGVQIRITSGPAIEKPGDLAALLTNLQEGDVLFIDEIHRLSRQV 126

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPA+ED+ LD+M+G+GPSA+S++INL RFTLI ATTR G LT PL+DRFGI ++L 
Sbjct: 127 EEVLYPALEDYALDIMIGKGPSAQSIRINLPRFTLIGATTRAGQLTGPLRDRFGILLKLE 186

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
            Y  ++L  I+ R A + G+ +T+E A E+A  SRGTPRIA RLL+RVRDFA V    TI
Sbjct: 187 PYSPKELAQIITRSAGILGIPITEEGALELARCSRGTPRIANRLLKRVRDFATVQGDGTI 246

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
             E A  A   + ID+MG D+LD   L  I   +GGGPVG+ET++A L E    +EDL E
Sbjct: 247 DEETAVEARKWMDIDEMGLDELDRSLLRAIIEMYGGGPVGLETLAAALGEESVTLEDLCE 306

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           PY++Q G + RTPRGR +  +A++HL + +P R
Sbjct: 307 PYLMQMGMLTRTPRGRCVTRLAYEHLHMAVPRR 339


>gi|270307967|ref|YP_003330025.1| Holliday junction DNA helicase subunit [Dehalococcoides sp. VS]
 gi|270153859|gb|ACZ61697.1| Holliday junction DNA helicase subunit [Dehalococcoides sp. VS]
          Length = 349

 Score =  361 bits (926), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 182/331 (54%), Positives = 239/331 (72%), Gaps = 1/331 (0%)

Query: 3   DREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           ++E L+S  ++ +DA + + LRPR L +F GQ     NL V I+AAK R EALDHVL  G
Sbjct: 4   EKERLISGKLAADDAKLDTSLRPRCLPDFIGQKRLKDNLGVAIQAAKQRGEALDHVLLYG 63

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTL+ ++A E+GVN R TSGP I + GDLAA+LTNL+  D+LFIDEIHRLS  V
Sbjct: 64  PPGLGKTTLSHIIALEMGVNIRITSGPAIERQGDLAAILTNLKPFDILFIDEIHRLSRNV 123

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMED+ LD+MVG+GP ARS+++ L  FTLI ATTR  +L+ PL+DRFG   RL+
Sbjct: 124 EEVLYPAMEDYALDIMVGKGPGARSLRLKLPHFTLIGATTRYAMLSAPLRDRFGSIFRLD 183

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY+ E +  IV+R A++ G+   +    +IA RSRGTPR+A RLLRRVRD+A+V     I
Sbjct: 184 FYDEEAIYDIVRRSARILGVEADENGLHQIACRSRGTPRVANRLLRRVRDYAQVKGNGLI 243

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T +IA  +L  L +DK+G D++D + L  I   FGGGPVG+ETI+A +SE  D I D+ E
Sbjct: 244 TGDIAAESLACLEVDKLGLDEIDHKVLKTIIHKFGGGPVGLETIAAAISEEADTIMDVYE 303

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           PY++Q GF++RTPRGR    +A+QHL I  P
Sbjct: 304 PYLLQLGFLERTPRGRQATRLAYQHLSIPYP 334


>gi|256420297|ref|YP_003120950.1| Holliday junction DNA helicase RuvB [Chitinophaga pinensis DSM
           2588]
 gi|256035205|gb|ACU58749.1| Holliday junction DNA helicase RuvB [Chitinophaga pinensis DSM
           2588]
          Length = 355

 Score =  360 bits (925), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 179/307 (58%), Positives = 226/307 (73%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR + +F+GQ +   NLK+FI+AAK R EALDH+LF GPPGLGKTTL+++VA E+GVN
Sbjct: 36  IRPREIVDFSGQDQIIENLKIFIKAAKMRGEALDHILFHGPPGLGKTTLSRIVANEMGVN 95

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGPVI K GDLA LLTNLED+DVLFIDEIHRLS +VEE LY AMED+++D+M+  G
Sbjct: 96  IKETSGPVIEKPGDLAGLLTNLEDKDVLFIDEIHRLSTVVEEYLYSAMEDYRIDIMIDTG 155

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSARS++I L  FTLI ATTR GLLT PL  RFGI  RL +Y    L+ I+ R + +   
Sbjct: 156 PSARSIQITLHPFTLIGATTRSGLLTAPLLSRFGIKSRLEYYNAATLQKIIWRASDILHT 215

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T +AA EIA RSRGTPRIA  LLRRVRDFA+V    TI  EIA  +L  L +D+ G D
Sbjct: 216 KITSDAAMEIARRSRGTPRIANGLLRRVRDFAQVMGNGTIDLEIAQFSLKALNVDEYGLD 275

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           ++D R L +I  NF GGPVGI TI+  + E    +E++ EP++IQ+GFI+RTPRGR +  
Sbjct: 276 EMDNRILQVIIENFKGGPVGITTIATAVGEESGTLEEVYEPFLIQEGFIKRTPRGREVTE 335

Query: 322 IAWQHLG 328
            A+ HLG
Sbjct: 336 KAYIHLG 342


>gi|153814821|ref|ZP_01967489.1| hypothetical protein RUMTOR_01036 [Ruminococcus torques ATCC 27756]
 gi|317500340|ref|ZP_07958565.1| Holliday junction DNA helicase RuvB [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331089651|ref|ZP_08338550.1| Holliday junction ATP-dependent DNA helicase ruvB [Lachnospiraceae
           bacterium 3_1_46FAA]
 gi|145847852|gb|EDK24770.1| hypothetical protein RUMTOR_01036 [Ruminococcus torques ATCC 27756]
 gi|316898281|gb|EFV20327.1| Holliday junction DNA helicase RuvB [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330405019|gb|EGG84557.1| Holliday junction ATP-dependent DNA helicase ruvB [Lachnospiraceae
           bacterium 3_1_46FAA]
          Length = 334

 Score =  360 bits (925), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 169/309 (54%), Positives = 235/309 (76%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP++L E+ GQ +A   L ++IEAAKAR E LDHVLF GPPGLGKTTLA ++A E+GV+
Sbjct: 21  LRPQSLGEYIGQEKAKETLGIYIEAAKARGETLDHVLFYGPPGLGKTTLAGIIANEMGVH 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGP I K G++AA+L  L++ DVLF+DEIHRL+  VEE+LYPAMEDF +D+M+G+G
Sbjct: 81  MKVTSGPAIEKPGEMAAILNGLQEGDVLFVDEIHRLNRQVEEVLYPAMEDFAIDIMIGKG 140

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            +ARS+++NL +FTL+ ATTR G+LT PL+DRFG+  RL  Y  E+LKTI+ R A +  +
Sbjct: 141 SAARSIRLNLPKFTLVGATTRAGMLTAPLRDRFGVMHRLELYTPEELKTIILRSASVLNV 200

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + ++ A E+A RSRGTPR+A RLL+RVRDFA+V +   IT+++AD AL  L +DK G D
Sbjct: 201 EIEEDGALELARRSRGTPRLANRLLKRVRDFAQVKYDGKITKKVADYALDLLDVDKYGLD 260

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D   L  +   F GGPVG++T++A +SE    +ED+ EPY+++ GFIQRTPRGR++  
Sbjct: 261 HIDRTILLTMIEKFQGGPVGLDTLAAAISEDAGTLEDVYEPYLLKNGFIQRTPRGRIVTD 320

Query: 322 IAWQHLGID 330
           +A++HLGI+
Sbjct: 321 LAYRHLGIE 329


>gi|58584510|ref|YP_198083.1| Holliday junction DNA helicase B [Wolbachia endosymbiont strain TRS
           of Brugia malayi]
 gi|81311657|sp|Q5GT33|RUVB_WOLTR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|58418826|gb|AAW70841.1| Holliday junction resolvasome, helicase subunit, RuvB [Wolbachia
           endosymbiont strain TRS of Brugia malayi]
          Length = 326

 Score =  360 bits (925), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 178/308 (57%), Positives = 233/308 (75%), Gaps = 2/308 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  L++F GQ +   NLKVFI AAK R EALDHVL  GPPGLGKTTLAQ++++EL V+
Sbjct: 19  IRPEQLDDFFGQKDLIQNLKVFINAAKTRTEALDHVLLHGPPGLGKTTLAQIISKELRVS 78

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           FR+TSGP++ KAGDLAA+LT L  +DVLFIDEIHRL+  +EE+LY AMEDF LDL+VGEG
Sbjct: 79  FRATSGPLLNKAGDLAAVLTTLNAKDVLFIDEIHRLNRSIEEVLYTAMEDFCLDLLVGEG 138

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PS R+++I+L  FTL+ ATTR+GLL+ PL+DRFGIP+RL FY  E+L  I++RG K+   
Sbjct: 139 PSTRTLRIDLPPFTLVGATTRLGLLSAPLRDRFGIPLRLEFYSFEELVDIIKRGTKVFSA 198

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + ++A  EIA R+RGTPRIA RLLRR+RDF EV   K IT +IAD+AL +L IDKMG +
Sbjct: 199 EIEEDAIQEIACRARGTPRIALRLLRRIRDFVEVKDNKKITHKIADSALSKLGIDKMGLN 258

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           +LD+ YL  +      G VGI+TIS  LSE    IE+ +EPY+++  F++RTPRGR+L  
Sbjct: 259 KLDVDYLRFLFNT--SGSVGIDTISIALSEDSGNIEETVEPYLVKISFVKRTPRGRVLTD 316

Query: 322 IAWQHLGI 329
              ++L +
Sbjct: 317 QGKEYLSL 324


>gi|284048862|ref|YP_003399201.1| Holliday junction DNA helicase RuvB [Acidaminococcus fermentans DSM
           20731]
 gi|283953083|gb|ADB47886.1| Holliday junction DNA helicase RuvB [Acidaminococcus fermentans DSM
           20731]
          Length = 338

 Score =  360 bits (925), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 176/332 (53%), Positives = 239/332 (71%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D   +++ +  ++D     LRPR L E+ GQ +   N+++FI+AA  R EALDHVL  
Sbjct: 1   MEDTNRVIAGHEQEQDGWQYSLRPRRLAEYIGQSKVKKNMEIFIQAALKRKEALDHVLLY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A EL VN R TSGP + + GDLAA+LTNL D DVLFIDEIHRL   
Sbjct: 61  GPPGLGKTTLANIIANELNVNIRITSGPALERQGDLAAILTNLSDSDVLFIDEIHRLPKT 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILY AMED+ LD+++G+GP+ARSV+++L RFTLI ATTR+G +  PL+DRFG+   L
Sbjct: 121 VEEILYSAMEDYALDIIIGKGPAARSVRLDLPRFTLIGATTRMGSIAAPLRDRFGVICHL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  E+L+ IV+R A++  +++  E A EI  RSRGTPR+A RLL+RVRDFAEV   + 
Sbjct: 181 EFYTPEELQIIVERAAEILKVSIEPEGAYEIGRRSRGTPRVANRLLKRVRDFAEVGGHEV 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           ITR++   A+ RL ID +G DQ D R L  + ++FGG PVG++T++A L+E  + +ED+ 
Sbjct: 241 ITRDVCRDAMKRLEIDDLGLDQNDRRLLHKLVKDFGGRPVGVDTLAASLNEETETLEDVY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EPY++Q G +QRTP+GR     A+Q+LG+  P
Sbjct: 301 EPYLMQLGMLQRTPKGRQATLAAYQYLGVPYP 332


>gi|255994148|ref|ZP_05427283.1| holliday junction DNA helicase RuvB [Eubacterium saphenum ATCC
           49989]
 gi|255993816|gb|EEU03905.1| holliday junction DNA helicase RuvB [Eubacterium saphenum ATCC
           49989]
          Length = 332

 Score =  360 bits (925), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 172/310 (55%), Positives = 231/310 (74%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP++L+++ GQ +   NL+VFI+AAK R+E+LDHVLF GP GLGKTTL+ ++A EL  +
Sbjct: 21  LRPKSLKDYIGQKDVIDNLEVFIKAAKKRSESLDHVLFFGPAGLGKTTLSCIIANELSAD 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGP I KAGDLAA+LTNL + DVLFIDEIHRL+  VEE+LY AMED+ +D+++G+G
Sbjct: 81  IKITSGPTIEKAGDLAAILTNLTENDVLFIDEIHRLNRTVEEVLYSAMEDYAIDIIIGKG 140

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSARS+++++ +FTL+ ATTR G LT PL+DRFGI  + N Y  ++LK IV R A + G+
Sbjct: 141 PSARSIRLDIPKFTLVGATTRAGNLTAPLRDRFGIVSKFNLYSNDELKQIVNRSAGILGI 200

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + D+AA EIA RSRGTPRIA R+L+RVRDF+EV+    +    A  AL  L ID  G +
Sbjct: 201 KINDKAASEIAKRSRGTPRIANRILKRVRDFSEVSGKDEVDINDATKALDALGIDSAGLE 260

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             D R L+ I   F GGPVGI+TI+A + E R  IED+ EPY++Q+GFI RTP+GR+   
Sbjct: 261 DTDRRILSFIIDRFTGGPVGIDTIAASIGEERITIEDVYEPYLLQEGFIHRTPKGRVASE 320

Query: 322 IAWQHLGIDI 331
            A++HLGI+I
Sbjct: 321 KAYEHLGINI 330


>gi|169824512|ref|YP_001692123.1| holliday junction DNA helicase [Finegoldia magna ATCC 29328]
 gi|167831317|dbj|BAG08233.1| holliday junction DNA helicase [Finegoldia magna ATCC 29328]
          Length = 335

 Score =  360 bits (924), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 177/315 (56%), Positives = 229/315 (72%), Gaps = 1/315 (0%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           ED D +L RP+ + ++ GQ +    L +FIEAAK R E LDH L  GPPGLGKTTLA ++
Sbjct: 18  EDIDFNL-RPKWMSDYIGQDKVKKKLSIFIEAAKNRNEPLDHALLYGPPGLGKTTLAHII 76

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A E+GVN R TSGP I K  DLA++LTNL+  DVLFIDEIHR++  VEEILYPAMED+ L
Sbjct: 77  ANEMGVNLRVTSGPAIEKPSDLASILTNLQKDDVLFIDEIHRINRSVEEILYPAMEDYAL 136

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D++VG+GPSARS++I+L +FTLI ATTR G LT PL+DRFG+ + L  Y+IE LK IV R
Sbjct: 137 DIIVGKGPSARSLRIDLEKFTLIGATTRSGQLTGPLRDRFGVLLNLELYDIESLKKIVTR 196

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A + G+ + ++ A EIA RSRGTPRIA RLL+RVRD+AEV    TIT+EI++  L  L 
Sbjct: 197 SAGVLGIGIDEQGAMEIARRSRGTPRIANRLLKRVRDYAEVRADGTITQEISNLGLNLLE 256

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +DK G D +D + +  +  NF GGPVG++TI+A   E R  IED+ EPY++Q GFI RT 
Sbjct: 257 VDKCGLDYVDRKIIMTMINNFDGGPVGVDTIAAATGEERITIEDVYEPYLLQIGFINRTS 316

Query: 315 RGRLLMPIAWQHLGI 329
           RGR++   A++H  I
Sbjct: 317 RGRIVTDKAYKHFNI 331


>gi|312143983|ref|YP_003995429.1| Holliday junction DNA helicase RuvB [Halanaerobium sp.
           'sapolanicus']
 gi|311904634|gb|ADQ15075.1| Holliday junction DNA helicase RuvB [Halanaerobium sp.
           'sapolanicus']
          Length = 344

 Score =  360 bits (924), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 171/309 (55%), Positives = 234/309 (75%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+TL E+ GQ ++   LK+FIEAA  R EALDHV+  GPPGLGKTTLA ++A EL VN
Sbjct: 23  LRPQTLAEYIGQSKSKEKLKIFIEAACNREEALDHVMLYGPPGLGKTTLAAIIANELNVN 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
              TSGP I + GDLA++LTNL+ +DVLFIDEIHRL+ +VEE+LYPAMED+ LD+++G+G
Sbjct: 83  IHQTSGPAIERPGDLASILTNLQSKDVLFIDEIHRLNKMVEEVLYPAMEDYCLDIIIGKG 142

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSARSV+++L+ FTL+ ATT+ G L++PL+DRFG+  RL FY  ++L+ I+ R A++  +
Sbjct: 143 PSARSVRLDLAPFTLVGATTKAGRLSSPLRDRFGVINRLEFYNKDELQEIILRSAEILNV 202

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +    A EIA RSRGTPRIA RLL+RVRDFA+V     I +++ D+AL  L ID++G D
Sbjct: 203 DIESHGALEIARRSRGTPRIANRLLKRVRDFAQVKADGIINQKVVDSALKLLEIDELGLD 262

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           ++D + L  I   FGGGPVG+ T++A +SE  + IED+ EPY++Q GF++RTPRGR+   
Sbjct: 263 RIDHKLLKTIILKFGGGPVGLNTLAASISEETETIEDVYEPYLLQLGFLERTPRGRVASL 322

Query: 322 IAWQHLGID 330
            A+QHL I+
Sbjct: 323 KAYQHLKIN 331


>gi|163786540|ref|ZP_02180988.1| Holliday junction DNA helicase RuvB [Flavobacteriales bacterium
           ALC-1]
 gi|159878400|gb|EDP72456.1| Holliday junction DNA helicase RuvB [Flavobacteriales bacterium
           ALC-1]
          Length = 340

 Score =  360 bits (924), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 184/319 (57%), Positives = 232/319 (72%), Gaps = 1/319 (0%)

Query: 11  NVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           N S E+ D+   LRP T ++FTGQ +   NL VF++AA  R EALDH LF GPPGLGKTT
Sbjct: 11  NFSPEELDVEKKLRPLTFDDFTGQDQVLENLLVFVQAANLRDEALDHTLFHGPPGLGKTT 70

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           LA +++ EL V  + TSGPV+ K GDLA LLTNLEDRDVLFIDEIHRLS IVEE LY AM
Sbjct: 71  LAHILSNELEVGIKVTSGPVLDKPGDLAGLLTNLEDRDVLFIDEIHRLSPIVEEYLYSAM 130

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           ED+++D+M+  GP+AR+V+INL+ FTL+ ATTR GLLT P++ RFGI  RL +Y+ + L 
Sbjct: 131 EDYKIDIMIESGPNARTVQINLNPFTLVGATTRSGLLTAPMRARFGISSRLQYYKTDLLT 190

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
           TIVQR A +  + ++ EAA EIA RSRGTPRIA  LLRRVRDFA++     I  +IA  A
Sbjct: 191 TIVQRSASILDVPISMEAAIEIAGRSRGTPRIANALLRRVRDFAQIKGDGKIDIKIAKFA 250

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           L  L +D  G D++D + LT I   F GGPVGI TI+  +SE  + IE++ EP++IQQGF
Sbjct: 251 LEALNVDAHGLDEMDNKILTTIIDKFKGGPVGISTIATAVSESTETIEEVYEPFLIQQGF 310

Query: 310 IQRTPRGRLLMPIAWQHLG 328
           I RTPRGR +   A++HLG
Sbjct: 311 IMRTPRGREVTEQAYKHLG 329


>gi|50812277|ref|YP_054590.1| Holliday junction DNA helicase RuvB [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221310712|ref|ZP_03592559.1| Holliday junction DNA helicase RuvB [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221315036|ref|ZP_03596841.1| Holliday junction DNA helicase RuvB [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221319957|ref|ZP_03601251.1| Holliday junction DNA helicase RuvB [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221324238|ref|ZP_03605532.1| Holliday junction DNA helicase RuvB [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|321312302|ref|YP_004204589.1| Holliday junction DNA helicase RuvB [Bacillus subtilis BSn5]
 gi|3122842|sp|O32055|RUVB_BACSU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|6977806|emb|CAB75331.1| RuvB protein [Bacillus subtilis subsp. subtilis str. 168]
 gi|32468806|emb|CAB14733.2| Holliday junction DNA helicase, ATP-dependent component [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|291485184|dbj|BAI86259.1| Holliday junction DNA helicase B [Bacillus subtilis subsp. natto
           BEST195]
 gi|320018576|gb|ADV93562.1| Holliday junction DNA helicase RuvB [Bacillus subtilis BSn5]
          Length = 334

 Score =  360 bits (924), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 181/331 (54%), Positives = 233/331 (70%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD   + S   + E      LRP+ L ++ GQ +   NL+VFI+AAK R E LDHVL  G
Sbjct: 1   MDERLVSSEADNHESVIEQSLRPQNLAQYIGQHKVKENLRVFIDAAKMRQETLDHVLLYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA +VA E+GV  R+TSGP I + GDLAA+LT LE  DVLFIDEIHRL   +
Sbjct: 61  PPGLGKTTLASIVANEMGVELRTTSGPAIERPGDLAAILTALEPGDVLFIDEIHRLHRSI 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTRVGLLT PL+DRFG+  RL 
Sbjct: 121 EEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRVGLLTAPLRDRFGVMSRLE 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y  E+L  IV R A +  + +   +A EIA RSRGTPR+A RLLRRVRDFA+V     I
Sbjct: 181 YYTQEELADIVTRTADVFEVEIDKPSALEIARRSRGTPRVANRLLRRVRDFAQVLGDSRI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T +I+  AL RL +D++G D +D + L  +   F GGPVG++TISA + E    IED+ E
Sbjct: 241 TEDISQNALERLQVDRLGLDHIDHKLLMGMIEKFNGGPVGLDTISATIGEESHTIEDVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           PY++Q GFIQRTPRGR++ P  + H  ++ P
Sbjct: 301 PYLLQIGFIQRTPRGRIVTPAVYHHFQMEAP 331


>gi|218133571|ref|ZP_03462375.1| hypothetical protein BACPEC_01438 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990946|gb|EEC56952.1| hypothetical protein BACPEC_01438 [Bacteroides pectinophilus ATCC
           43243]
          Length = 332

 Score =  360 bits (924), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 175/329 (53%), Positives = 239/329 (72%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M+R  + + +  +++   + LRP  LEE+ GQ    SNLKV+IEAA+ R + LDHVL  G
Sbjct: 1   MERRVISTESFVEDEKLENSLRPMKLEEYIGQERVKSNLKVYIEAARNRKDVLDHVLLYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA +++ E+G N + TSGP I K G++AA+L NL + DVLF+DEIHRL+  V
Sbjct: 61  PPGLGKTTLASIISNEMGTNLKVTSGPAIEKPGEMAAILNNLNEGDVLFVDEIHRLNRQV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMEDF +D+++G+G SARS++++L  FTL+ ATTR GLLT PL+DRFG+   L 
Sbjct: 121 EEVLYPAMEDFAIDIVIGKGASARSIRLDLPHFTLVGATTRAGLLTAPLRDRFGVVSHLE 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY  E+L+ I++R A++ G+ + +E A E+A RSRGTPR+A R+L+RVRDFA+V +   I
Sbjct: 181 FYTTEELERIIRRSAQVLGVEIDEEGAHELARRSRGTPRLANRMLKRVRDFAQVRYDGRI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           TRE+AD AL  + +DK G D+ D   L+ I   FGGGPVGIETI+A + E    +ED+ E
Sbjct: 241 TREVADYALNLMDVDKDGLDRNDRLILSTIINKFGGGPVGIETIAAAVGEDAGTLEDVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           PY++Q GFI RTPRGR+    A+  LGID
Sbjct: 301 PYLVQNGFINRTPRGRMASVHAYDCLGID 329


>gi|255526660|ref|ZP_05393565.1| Holliday junction DNA helicase RuvB [Clostridium carboxidivorans
           P7]
 gi|296187165|ref|ZP_06855562.1| Holliday junction DNA helicase RuvB [Clostridium carboxidivorans
           P7]
 gi|255509640|gb|EET85975.1| Holliday junction DNA helicase RuvB [Clostridium carboxidivorans
           P7]
 gi|296048200|gb|EFG87637.1| Holliday junction DNA helicase RuvB [Clostridium carboxidivorans
           P7]
          Length = 348

 Score =  360 bits (923), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 173/307 (56%), Positives = 231/307 (75%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ + E+ GQ +    LK+FIEAAK R EALDHVL  GPPGLGKTTLA ++A E+G N
Sbjct: 23  LRPKRINEYIGQKKVKEKLKIFIEAAKKRKEALDHVLLYGPPGLGKTTLANIIATEMGGN 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGP I +AGDLAA+LT+L D DVLFIDEIHRLS  VEEILYPAMED+ LD+++G+G
Sbjct: 83  LKVTSGPAIERAGDLAAILTSLNDYDVLFIDEIHRLSRNVEEILYPAMEDYALDIVIGKG 142

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            +A+S++++L +FTLI ATTRVGLLT+PL+DRFG+   + FYE ++LK I+ R A++ G+
Sbjct: 143 AAAKSIRLDLPKFTLIGATTRVGLLTSPLRDRFGVMCPMEFYENDELKEIIVRSAQILGV 202

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + + AA EI  RSRGTPRIA RLL+RVRD+++V     +  E+  AAL  L +D+ GFD
Sbjct: 203 KIEENAALEIGSRSRGTPRIANRLLKRVRDYSDVKGNGLVDLEVTKAALELLDVDEEGFD 262

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + LT I  NF GGPVG+ET++  + E  D I+D+ EPY++Q+GFI RTPRGR+   
Sbjct: 263 SIDNKILTAIIDNFKGGPVGLETLAYFIGEELDTIQDVYEPYLLQKGFIIRTPRGRVASD 322

Query: 322 IAWQHLG 328
            A++HL 
Sbjct: 323 SAYKHLN 329


>gi|154482943|ref|ZP_02025391.1| hypothetical protein EUBVEN_00641 [Eubacterium ventriosum ATCC
           27560]
 gi|149736227|gb|EDM52113.1| hypothetical protein EUBVEN_00641 [Eubacterium ventriosum ATCC
           27560]
          Length = 333

 Score =  360 bits (923), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 167/308 (54%), Positives = 234/308 (75%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP +L+++ GQ +A +NLK+FIEAAK+R E LDHVLF GPPGLGKTTLA ++A E+GV+
Sbjct: 21  LRPESLDQYVGQSKAKNNLKIFIEAAKSRNEPLDHVLFYGPPGLGKTTLATIIAHEMGVH 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGP I K G++AA+L NL + D+LFIDEIHRL+  VEE+LYPAMED+ +D+M+G+G
Sbjct: 81  IKVTSGPAIEKPGEMAAILNNLAENDILFIDEIHRLNRQVEEVLYPAMEDYSIDIMIGKG 140

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
             ARS++++L +FTL+ ATTR GLLT PL+DRFG+  +L FY +++LK I+ R A L  +
Sbjct: 141 QGARSIRLDLPKFTLVGATTRAGLLTAPLRDRFGVINKLEFYTVDELKQIIIRSAGLLNV 200

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + ++ A E+A RSRGTPR+A RLL+RVRDFA+V +   IT ++A+ AL  L +DK+G D
Sbjct: 201 EIDEKGATELARRSRGTPRLANRLLKRVRDFAQVKYDGVITEDVANLALDLLEVDKLGLD 260

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           + D   L  +   F GGPVG++T++A L E    +ED+ EPY+IQ G +QRTPRGR+   
Sbjct: 261 KGDRSILETMIDKFDGGPVGLDTLAAALGEDSGTLEDVYEPYLIQNGLLQRTPRGRIATR 320

Query: 322 IAWQHLGI 329
           +A++HLG+
Sbjct: 321 LAYEHLGV 328


>gi|260891161|ref|ZP_05902424.1| holliday junction DNA helicase RuvB [Leptotrichia hofstadii F0254]
 gi|260859188|gb|EEX73688.1| holliday junction DNA helicase RuvB [Leptotrichia hofstadii F0254]
          Length = 336

 Score =  360 bits (923), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 175/329 (53%), Positives = 237/329 (72%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M+ E +L      ED     LRPRT +E+ GQ +    + +FI+AAK R E+LDH+L  G
Sbjct: 1   MNEERILEPKELGEDNIQRSLRPRTFKEYIGQQDLKEKMNIFIKAAKMRNESLDHILLYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA V+A E+GVN + T+GPV+ KAGDLAA+LT+LE+ D+LFIDEIHRL+  V
Sbjct: 61  PPGLGKTTLAGVIATEMGVNLKITTGPVLEKAGDLAAILTSLEENDILFIDEIHRLNTSV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILYPAMED +LD+++G+GPSARS+++ L +FTLI ATTR G L+ PL+DRFG+  R+ 
Sbjct: 121 EEILYPAMEDGELDILIGKGPSARSIRVELPQFTLIGATTRAGQLSTPLRDRFGVTHRME 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y++EDLK I++RGA +  ++  ++   EIA RSRGTPRIA RLL+R RDFA V  +  +
Sbjct: 181 YYQLEDLKEIIRRGANILNISYDEDGITEIAKRSRGTPRIANRLLKRARDFALVEGSGIL 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
            +E  D  L  L +D  G D+LD   L  I   + GGPVGIET+S  L E R  IE++ E
Sbjct: 241 EKESVDGILRLLGVDDNGLDELDRNILLSIINVYNGGPVGIETLSLLLGEDRRTIEEVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           PY+++ GFI+RTPRGR++    ++HLGI+
Sbjct: 301 PYLVKIGFIKRTPRGRVVTEFGYKHLGIE 329


>gi|108758416|ref|YP_633125.1| Holliday junction DNA helicase RuvB [Myxococcus xanthus DK 1622]
 gi|123074142|sp|Q1D2J8|RUVB_MYXXD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|108462296|gb|ABF87481.1| Holliday junction DNA helicase RuvB [Myxococcus xanthus DK 1622]
          Length = 343

 Score =  359 bits (922), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 179/333 (53%), Positives = 237/333 (71%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M  +   LS +V  ED  + + LRPR+ +E+ GQ      LKV+++AA++R EALDH LF
Sbjct: 3   MARKSDTLSEDVLPEDVRLEASLRPRSFDEYVGQGPVVEKLKVYVQAARSRGEALDHCLF 62

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKT+LA ++A ELGV    TSGP + + GDLA LLTNL+ RDVLFIDEIHRL+ 
Sbjct: 63  SGPPGLGKTSLAHIIANELGVGIHVTSGPALERKGDLAGLLTNLDARDVLFIDEIHRLNA 122

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEE LYPAMEDF+LD+ +  GP+AR++KI+L  FTLI ATTR GLLT+PL+DRF I  R
Sbjct: 123 AVEEYLYPAMEDFRLDITIDTGPAARAMKIDLPPFTLIGATTRTGLLTSPLRDRFQIQER 182

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y+ + L++I+ R A++ G+ +  +AA E+A RSRGTPRI  RLLRR+RDFAEV    
Sbjct: 183 LEYYDAKALESILHRSARILGIPLDKDAAREVASRSRGTPRITNRLLRRLRDFAEVEGNG 242

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT E+A  +L RL +D  G D +D + L  I   FGGGPVG+ETI+A + E RD IED+
Sbjct: 243 RITLELAQKSLDRLGVDASGLDSMDRKILLTILDKFGGGPVGVETIAASVGEQRDTIEDV 302

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
            EP+++Q+GF+QRTPRGR+     +Q+     P
Sbjct: 303 YEPFLMQEGFLQRTPRGRMATHRTYQYFKKQPP 335


>gi|229825021|ref|ZP_04451090.1| hypothetical protein GCWU000182_00371 [Abiotrophia defectiva ATCC
           49176]
 gi|229790768|gb|EEP26882.1| hypothetical protein GCWU000182_00371 [Abiotrophia defectiva ATCC
           49176]
          Length = 333

 Score =  359 bits (922), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 172/324 (53%), Positives = 239/324 (73%), Gaps = 1/324 (0%)

Query: 7   LLSRNVSQEDA-DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           ++S   S+ED  +   LRP+ L ++ GQ +A   +KV+IEAAK R E LDHVL  GPPGL
Sbjct: 9   IISTIASEEDIRNDDTLRPKFLTDYIGQKKAKEMMKVYIEAAKGRKEPLDHVLLYGPPGL 68

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLA ++A E+GV+ + TSGP I K GD+AA+L NL++ DVLF+DEIHRL+  VEE+L
Sbjct: 69  GKTTLAGIIANEMGVHIKITSGPAIEKPGDVAAILNNLKEGDVLFVDEIHRLNRQVEEVL 128

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           YPAMEDF +D+++G+G +++S+++ L +FTLI ATTR G+L+ PL+DRFG+  RL +Y +
Sbjct: 129 YPAMEDFAIDVVIGKGATSKSIRLELPKFTLIGATTRAGMLSAPLRDRFGVVNRLEYYNL 188

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
            +L+TI+ R AK+ G+ + +EAA E+A RSRGTPR+A RLL+RVRDFAEV +   +T+E+
Sbjct: 189 TELETIIMRSAKVLGVKIENEAALEMAKRSRGTPRLANRLLKRVRDFAEVKYDGKLTKEV 248

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           A   L  L ID  G D +D + LT +   FGGGPVG+ETI+  + E    IED+ EPY+I
Sbjct: 249 AAEVLTLLNIDNYGLDHIDRQILTTMIEKFGGGPVGLETIAVSIGEDTATIEDVYEPYLI 308

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGI 329
           Q GFI RT RGR++  +A+ HLG+
Sbjct: 309 QSGFIARTQRGRIVTDLAYTHLGL 332


>gi|187778349|ref|ZP_02994822.1| hypothetical protein CLOSPO_01941 [Clostridium sporogenes ATCC
           15579]
 gi|187771974|gb|EDU35776.1| hypothetical protein CLOSPO_01941 [Clostridium sporogenes ATCC
           15579]
          Length = 342

 Score =  359 bits (922), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 176/316 (55%), Positives = 232/316 (73%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           ++D +   LRP TL+E+ GQ +  +NL +FI+AAK R E+LDHVLF GPPGLGKTTLA +
Sbjct: 12  EDDKEQYSLRPTTLKEYIGQEKVKANLDIFIQAAKKRGESLDHVLFYGPPGLGKTTLANI 71

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +A E+  N + TSGP I KAGDLAA+LT+L D DVLFIDEIHRL+  +EEILYPAMED+ 
Sbjct: 72  IANEMTGNLKVTSGPAIEKAGDLAAILTSLTDYDVLFIDEIHRLNRSIEEILYPAMEDYA 131

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           LD+++G+G +A+S++++L +FTLI ATTRVGLLT+PL+DRFG+   + FY  E+L  IV 
Sbjct: 132 LDIVIGKGAAAKSIRLDLPKFTLIGATTRVGLLTSPLRDRFGMLCAMEFYTDEELMEIVV 191

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A +  + +  EAA EI  RSRGTPRIA RLL+RVRD+ +V H   I  + A AAL  L
Sbjct: 192 RSAAILNVNICKEAAFEIGKRSRGTPRIANRLLKRVRDYCDVKHDGDIDLQGAKAALDLL 251

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +DK G D++D + L  I  NF GGPVG+ET++  + E  D IED+ EPY+IQ+GFI RT
Sbjct: 252 EVDKEGLDKIDNKILEAIIFNFKGGPVGLETLAYFIGEELDTIEDVYEPYLIQKGFIMRT 311

Query: 314 PRGRLLMPIAWQHLGI 329
           PRGR+    A+ H G+
Sbjct: 312 PRGRVASEKAYNHFGV 327


>gi|196250112|ref|ZP_03148806.1| Holliday junction DNA helicase RuvB [Geobacillus sp. G11MC16]
 gi|196210296|gb|EDY05061.1| Holliday junction DNA helicase RuvB [Geobacillus sp. G11MC16]
          Length = 333

 Score =  359 bits (922), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 174/313 (55%), Positives = 231/313 (73%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E+ GQ +   NL+VFIEAAK R E LDHVL  GPPGLGKTTLA ++A E+GV 
Sbjct: 21  LRPQYLHEYIGQDKVKENLQVFIEAAKLREETLDHVLLYGPPGLGKTTLAAIIANEMGVK 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R+TSGP + + GDLAALLT+LE  DVLFIDEIHRL   VEE+LYPAMED+ LD+ VG+G
Sbjct: 81  MRATSGPALERPGDLAALLTSLEPGDVLFIDEIHRLPRTVEEVLYPAMEDYCLDITVGKG 140

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P ARS++++L  FTL+ ATTR G L+ PL+DRFG+  RL +Y+++ L  I++R A +  +
Sbjct: 141 PEARSLRLDLPPFTLVGATTRAGALSAPLRDRFGVISRLEYYQVDQLAQIIERAAAILHI 200

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + +EAA E+A R+RGTPRIA RLLRRVRDFA+V+    IT  +A  AL RL +D++G D
Sbjct: 201 IINNEAALELARRARGTPRIANRLLRRVRDFAQVSGDGEITLPLAVEALERLQVDRLGLD 260

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  I   F GGPVG+ET++A + E    IE++ EPY++Q G +QRTPRGR+  P
Sbjct: 261 HIDHKLLLAIIEKFAGGPVGLETMAAVIGEEAQTIEEVYEPYLLQIGLLQRTPRGRVATP 320

Query: 322 IAWQHLGIDIPHR 334
            A+ HLG+++P R
Sbjct: 321 AAYAHLGMEVPKR 333


>gi|150016409|ref|YP_001308663.1| Holliday junction DNA helicase RuvB [Clostridium beijerinckii NCIMB
           8052]
 gi|189046025|sp|A6LTM7|RUVB_CLOB8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|149902874|gb|ABR33707.1| Holliday junction DNA helicase RuvB [Clostridium beijerinckii NCIMB
           8052]
          Length = 347

 Score =  359 bits (922), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 177/325 (54%), Positives = 241/325 (74%), Gaps = 1/325 (0%)

Query: 5   EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E +++++  QED +  L LRP+ + E+ GQ +    L +FI+AAK R EALDH L  GPP
Sbjct: 2   ERIVNQSEMQEDFNSELSLRPQKINEYIGQDKVKERLDIFIKAAKNRKEALDHTLLYGPP 61

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++A+E+G + + TSGP I +AG+LAA+LT L+D DVLFIDEIHRL+  VEE
Sbjct: 62  GLGKTTLANIIAKEMGGDLKITSGPAIERAGELAAILTTLKDYDVLFIDEIHRLNRNVEE 121

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILYPAMED+ LD+++G+G +A+S++I+L +FTLI ATTR+G+LT+PL+DRFG+   + +Y
Sbjct: 122 ILYPAMEDYALDIVIGKGATAKSIRIDLPKFTLIGATTRIGMLTSPLRDRFGVLCAMEYY 181

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
             E+LK IV R A + G A+T+E A EIA RSRGTPRIA RLL+RVRD++EV   K ++ 
Sbjct: 182 TDEELKEIVSRSALVFGCAITEEGALEIAKRSRGTPRIANRLLKRVRDYSEVKSNKLVSL 241

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           + A  AL  L +D  GFD++D + L  I  NF GGPVGIET+S  + E    IED+ EPY
Sbjct: 242 KEAREALELLEVDNQGFDKVDNKILEAIIDNFNGGPVGIETLSYFIGEELGTIEDVYEPY 301

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLG 328
           ++Q+GFI RTPRGR+    A++HLG
Sbjct: 302 LLQKGFIIRTPRGRIASDKAYEHLG 326


>gi|210615645|ref|ZP_03290691.1| hypothetical protein CLONEX_02909 [Clostridium nexile DSM 1787]
 gi|210150188|gb|EEA81197.1| hypothetical protein CLONEX_02909 [Clostridium nexile DSM 1787]
          Length = 335

 Score =  359 bits (922), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 170/317 (53%), Positives = 235/317 (74%), Gaps = 1/317 (0%)

Query: 14  QEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           +ED  I + LRP+ L ++ GQ +A   LK++IEAAK+R E+LDHVLF GPPGLGKTTLA 
Sbjct: 14  EEDVKIENHLRPQLLSDYIGQEKAKQTLKIYIEAAKSRKESLDHVLFYGPPGLGKTTLAG 73

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++A E+ VN + TSGP I K G++AA+L NL++ DVLF+DEIHRL+  VEE+LYPAMED+
Sbjct: 74  IIANEMNVNLKVTSGPAIEKPGEIAAILNNLQEGDVLFVDEIHRLNRQVEEVLYPAMEDY 133

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            +D+M+G+G SARS++++L +FTL+ ATTR G+LT PL+DRFG+  RL FY  ++L+TI+
Sbjct: 134 AIDIMIGKGASARSIRLDLPKFTLVGATTRAGMLTAPLRDRFGVVNRLEFYTEKELQTII 193

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R A + G+ +    A E+A RSRGTPR+A RLL+RVRDFA+V +   IT E+A  AL  
Sbjct: 194 MRSADVLGVEIEPNGALEMAKRSRGTPRLANRLLKRVRDFAQVKYDGVITEEVAMYALDL 253

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D+ G D +D   L  I   F GGPVG++T++A + E    IED+ EPY+++ GFIQR
Sbjct: 254 LEVDRYGLDHIDRNILLTIIEKFQGGPVGLDTLAASIGEDSGTIEDVYEPYLLKNGFIQR 313

Query: 313 TPRGRLLMPIAWQHLGI 329
           TP+GR++   A+ HLGI
Sbjct: 314 TPKGRVVTEFAYHHLGI 330


>gi|153810825|ref|ZP_01963493.1| hypothetical protein RUMOBE_01209 [Ruminococcus obeum ATCC 29174]
 gi|149833221|gb|EDM88303.1| hypothetical protein RUMOBE_01209 [Ruminococcus obeum ATCC 29174]
          Length = 332

 Score =  359 bits (922), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 169/325 (52%), Positives = 243/325 (74%), Gaps = 1/325 (0%)

Query: 7   LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           +++ +V++ED  +   LRP+TL+E+ GQ +    LK++IEAAK R +ALDHVLF GPPGL
Sbjct: 5   MITTDVTEEDLPLEGSLRPQTLDEYIGQEKTKKTLKIYIEAAKQRHDALDHVLFYGPPGL 64

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTL+ ++A E+G + + TSGP I K G++AA+L NL++ D+LF+DEIHRL+  VEE+L
Sbjct: 65  GKTTLSGIIANEMGTHMKVTSGPAIEKPGEMAAILNNLQEGDILFVDEIHRLNRQVEEVL 124

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           YPAMEDF +D+M+G+G SARS++++L +FTL+ ATTR GLL+ PL+DRFG+   L FY  
Sbjct: 125 YPAMEDFAIDIMIGKGASARSIRLDLPKFTLVGATTRAGLLSAPLRDRFGVMHHLEFYNH 184

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           ++L+TIV R A++ G+ +  + A EIA RSRGTPR+A RLL+RVRDFA+V +   IT ++
Sbjct: 185 KELQTIVLRSAQVLGVEIDAKGAAEIAKRSRGTPRLANRLLKRVRDFAQVKYDGRITYDV 244

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           A  AL  L +D+ G D++D R L  +  NF GGPVG+ET++A + E    +ED+ EPY++
Sbjct: 245 ASFALDLLEVDQYGLDKIDRRILQTLIVNFQGGPVGLETLAAAIGEDAGTLEDVYEPYLL 304

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGID 330
           Q GF+ RTPRGR    +A++HLG +
Sbjct: 305 QNGFLNRTPRGRTASSLAYEHLGFE 329


>gi|126663091|ref|ZP_01734089.1| Holliday junction DNA helicase B [Flavobacteria bacterium BAL38]
 gi|126624749|gb|EAZ95439.1| Holliday junction DNA helicase B [Flavobacteria bacterium BAL38]
          Length = 340

 Score =  359 bits (922), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 183/317 (57%), Positives = 229/317 (72%), Gaps = 1/317 (0%)

Query: 13  SQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           S +D DI   LRP + ++F GQ +   NL VF++AA  R EALDH LF GPPGLGKTTLA
Sbjct: 13  SPQDIDIEKALRPLSFDDFAGQDQVLENLIVFVQAANLRNEALDHTLFHGPPGLGKTTLA 72

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            ++A ELGV  + TSGPV+ K GDLA LLTNLEDRDVLFIDEIHRLS IVEE LY AMED
Sbjct: 73  NILANELGVGIKITSGPVLDKPGDLAGLLTNLEDRDVLFIDEIHRLSPIVEEYLYSAMED 132

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F++D+M+  GP+AR+V+INL+ FTL+ ATTR GLLT P++ RFGI  RL +Y  E L TI
Sbjct: 133 FKIDIMIESGPNARTVQINLNPFTLVGATTRSGLLTAPMRARFGIQSRLQYYNTELLTTI 192

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           VQR + +  + +T EAA EIA RSRGTPRIA  LLRRVRDFA++     I  EIA  AL 
Sbjct: 193 VQRSSSILKMPITMEAAIEIAGRSRGTPRIANALLRRVRDFAQIKGNGKIDIEIAKFALK 252

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L +D  G D++D + L  I   F GGPVG+ T++  +SE  + IE++ EP++IQ+GFI 
Sbjct: 253 ALNVDAHGLDEMDNKILLTIIEKFKGGPVGLSTLATAVSESGETIEEVYEPFLIQEGFIM 312

Query: 312 RTPRGRLLMPIAWQHLG 328
           RTPRGR +   A++HLG
Sbjct: 313 RTPRGREVTEKAYKHLG 329


>gi|257125126|ref|YP_003163240.1| Holliday junction DNA helicase RuvB [Leptotrichia buccalis
           C-1013-b]
 gi|257049065|gb|ACV38249.1| Holliday junction DNA helicase RuvB [Leptotrichia buccalis
           C-1013-b]
          Length = 337

 Score =  359 bits (921), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 175/329 (53%), Positives = 237/329 (72%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M+ E +L      ED     LRPRT +E+ GQ +    + +FI+AAK R E+LDH+L  G
Sbjct: 1   MNEERILEPKELGEDNIQRSLRPRTFKEYIGQQDLKEKMNIFIKAAKMRNESLDHILLYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA V+A E+GVN + T+GPV+ KAGDLAA+LT+LE+ D+LFIDEIHRL+  V
Sbjct: 61  PPGLGKTTLAGVIATEMGVNLKITTGPVLEKAGDLAAILTSLEENDILFIDEIHRLNTSV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILYPAMED +LD+++G+GPSARS+++ L RFTLI ATTR G L+ PL+DRFG+  R+ 
Sbjct: 121 EEILYPAMEDGELDILIGKGPSARSIRVELPRFTLIGATTRAGQLSTPLRDRFGVTHRME 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y++E+LK I++RGA +  ++  ++   EIA RSRGTPRIA RLL+R RDFA V  +  +
Sbjct: 181 YYQLEELKEIIRRGANILNISYDEDGITEIAKRSRGTPRIANRLLKRARDFALVEGSGVL 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
            +E  D  L  L +D  G D+LD   L  I   + GGPVGIET+S  L E R  IE++ E
Sbjct: 241 EKESVDGILRLLGVDDNGLDELDRNILLSIINVYNGGPVGIETLSLLLGEDRRTIEEVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           PY+++ GFI+RTPRGR++    ++HLGI+
Sbjct: 301 PYLVKIGFIKRTPRGRVVTEFGYRHLGIE 329


>gi|313892062|ref|ZP_07825660.1| Holliday junction DNA helicase RuvB [Dialister microaerophilus UPII
           345-E]
 gi|329120928|ref|ZP_08249560.1| crossover junction ATP-dependent DNA helicase RuvB [Dialister
           micraerophilus DSM 19965]
 gi|313119514|gb|EFR42708.1| Holliday junction DNA helicase RuvB [Dialister microaerophilus UPII
           345-E]
 gi|327471387|gb|EGF16838.1| crossover junction ATP-dependent DNA helicase RuvB [Dialister
           micraerophilus DSM 19965]
          Length = 365

 Score =  359 bits (921), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 177/310 (57%), Positives = 223/310 (71%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+  E++ GQ E   NL ++++AAK R EALDHVL  GPPGLGKTTLA ++A ELGVN
Sbjct: 34  LRPKIFEDYIGQSELKQNLNIYVKAAKNRKEALDHVLLYGPPGLGKTTLAGIIANELGVN 93

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           FR TSGP I + GDLAALLTNL + DVLFIDEIHRL+  VEEILYPAMEDF LD+++G+G
Sbjct: 94  FRVTSGPAIERPGDLAALLTNLNEHDVLFIDEIHRLNRSVEEILYPAMEDFALDIIIGKG 153

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P ARS  + ++ FTLI ATTR G L  PL+DRFGI  R+ FY  ++LK I+ R A +  +
Sbjct: 154 PGARSYHMPIAPFTLIGATTRAGSLAAPLRDRFGIIFRMKFYNPQELKQIIIRSANILQI 213

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  + A EIA RSRGTPRIA RLL+RVRDFA+V     IT +IA  AL  L ID +G D
Sbjct: 214 KIETKGAEEIAKRSRGTPRIANRLLKRVRDFAQVLGTGVITEDIAQKALSALHIDCLGLD 273

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             DL  +  I   F GGPVGI+TI+A +SE +  IED+ EPY+++ GF+ RTPRGR+   
Sbjct: 274 VTDLEVIRTIITKFDGGPVGIDTIAASVSEEKSTIEDVYEPYLMKIGFLSRTPRGRIATK 333

Query: 322 IAWQHLGIDI 331
            A++HL I +
Sbjct: 334 AAYKHLNISV 343


>gi|148656547|ref|YP_001276752.1| Holliday junction DNA helicase RuvB [Roseiflexus sp. RS-1]
 gi|166231550|sp|A5UVZ9|RUVB_ROSS1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|148568657|gb|ABQ90802.1| Holliday junction DNA helicase RuvB [Roseiflexus sp. RS-1]
          Length = 347

 Score =  359 bits (921), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 184/329 (55%), Positives = 234/329 (71%), Gaps = 1/329 (0%)

Query: 2   MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M RE +++    +ED  I   LRPR L EF GQ +    L++ I AAK R E LDH L  
Sbjct: 1   MSRERVVTPKAGEEDQQIEKSLRPRRLAEFIGQEKVVEQLRIAIMAAKGRGEPLDHTLLY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKT+LA V+A E+GVN + TSGP I +AGDLAALLTNL+  D+LFIDEIHRL+  
Sbjct: 61  GPPGLGKTSLAGVLAAEMGVNIKLTSGPAIERAGDLAALLTNLQKDDILFIDEIHRLNRA 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EE+LYPAMEDF LD+MVG+GP ARS+++ L RFT+I ATTR+ LLT+PL+DRFG   RL
Sbjct: 121 IEEVLYPAMEDFALDIMVGKGPGARSLRLKLPRFTVIGATTRLALLTSPLRDRFGSVHRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY ++ L  IV R A++ G+  T E A EIA R+RGTPRI  RLLRRVRD+A+V     
Sbjct: 181 EFYSVDALYQIVMRSARILGVDCTPEGAHEIAARARGTPRIVNRLLRRVRDYAQVVGNGV 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           IT E A  AL +L +D +G D  D R L  I   F GGPVG+ T++A L+E  DAIED+ 
Sbjct: 241 ITLETARDALAKLEVDHLGLDDNDRRLLRAIIELFNGGPVGLSTLAASLAEEVDAIEDVY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           EP+++Q GF+QRTPRGR+    A++HLG+
Sbjct: 301 EPFLLQLGFLQRTPRGRIATRRAYEHLGV 329


>gi|289207746|ref|YP_003459812.1| Holliday junction DNA helicase RuvB [Thioalkalivibrio sp. K90mix]
 gi|288943377|gb|ADC71076.1| Holliday junction DNA helicase RuvB [Thioalkalivibrio sp. K90mix]
          Length = 348

 Score =  359 bits (921), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 179/312 (57%), Positives = 228/312 (73%), Gaps = 1/312 (0%)

Query: 7   LLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           L+      ED  + + LRP+ L+++TGQ      L +FIEAA+ R EALDH L  GPPGL
Sbjct: 5   LVDMQSQSEDPRVEVSLRPKRLDDYTGQPRVVEQLGLFIEAARGRGEALDHTLVAGPPGL 64

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLA +VA ELGV  R TSGPV+ +AGDLAA+LT LE +DVLF+DEIHRL  +VEEIL
Sbjct: 65  GKTTLAHIVANELGVGLRQTSGPVLERAGDLAAILTALEPQDVLFVDEIHRLPTVVEEIL 124

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           YPA+ED QLD+++GEGP+ARS+K++L  FTL+ ATTR GLL+ PL+DRFGI  RL+ Y +
Sbjct: 125 YPALEDGQLDIVIGEGPAARSIKVDLPPFTLVGATTRAGLLSAPLRDRFGIVQRLDHYTV 184

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
            DL  IV R A L G+ +  E A EIA R RGTPR+A RLLRRVRD+AEV  +  IT E+
Sbjct: 185 TDLAHIVGRAAGLLGVGIEPEGAAEIARRGRGTPRLANRLLRRVRDYAEVRASGVITAEV 244

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           A  AL  LAID  G D  D R L ++   F GGPVG+E+++  L+E R  +ED++EP++I
Sbjct: 245 AAQALDLLAIDASGLDAQDRRLLEVLVEKFDGGPVGVESLATALNEDRGTLEDVVEPFLI 304

Query: 306 QQGFIQRTPRGR 317
           QQG++QRTPRGR
Sbjct: 305 QQGYLQRTPRGR 316


>gi|289432492|ref|YP_003462365.1| Holliday junction DNA helicase RuvB [Dehalococcoides sp. GT]
 gi|288946212|gb|ADC73909.1| Holliday junction DNA helicase RuvB [Dehalococcoides sp. GT]
          Length = 362

 Score =  358 bits (920), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 181/328 (55%), Positives = 237/328 (72%), Gaps = 1/328 (0%)

Query: 3   DREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           ++E L+S  +  +DA + + LRPR L +F GQ     NL V I+AAK R EALDHVL  G
Sbjct: 17  EKERLISGKLVTDDAKLDTSLRPRCLPDFIGQKRLKDNLGVAIQAAKQRGEALDHVLLYG 76

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTL+ ++A E+GVN R TSGP I + GDLAA+LTNL+  D+LFIDEIHRLS  V
Sbjct: 77  PPGLGKTTLSHIIALEMGVNIRITSGPAIERQGDLAAILTNLKPFDILFIDEIHRLSRNV 136

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMED+ LD+MVG+GP ARS+++ L  FTLI ATTR  +L+ PL+DRFG   RL+
Sbjct: 137 EEVLYPAMEDYALDIMVGKGPGARSLRLKLPHFTLIGATTRYAMLSAPLRDRFGSIFRLD 196

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY+ E +  IV+R A++ G+   +    +IA RSRGTPR+A RLLRRVRD+A+V     I
Sbjct: 197 FYDEEAIHDIVRRSARILGVEADENGLHQIACRSRGTPRVANRLLRRVRDYAQVKGNGLI 256

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T +IA  +L  L +DK+G D++D + L  I   FGGGPVG+ETI+A +SE  D I D+ E
Sbjct: 257 TADIAAESLACLEVDKLGLDEIDHKVLKTIIHKFGGGPVGLETIAAAISEEADTIMDVYE 316

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           PY++Q GF++RTPRGR    +A+QHL I
Sbjct: 317 PYLLQLGFLERTPRGRQATRLAYQHLSI 344


>gi|46580660|ref|YP_011468.1| Holliday junction DNA helicase RuvB [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120602037|ref|YP_966437.1| Holliday junction DNA helicase RuvB [Desulfovibrio vulgaris DP4]
 gi|47606084|sp|P61531|RUVB_DESVH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|166231488|sp|A1VC44|RUVB_DESVV RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|46450079|gb|AAS96728.1| Holliday junction DNA helicase RuvB [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120562266|gb|ABM28010.1| Holliday junction DNA helicase subunit RuvB [Desulfovibrio vulgaris
           DP4]
 gi|311234389|gb|ADP87243.1| Holliday junction DNA helicase RuvB [Desulfovibrio vulgaris RCH1]
          Length = 320

 Score =  358 bits (920), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 172/308 (55%), Positives = 236/308 (76%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR L++F GQ E  +N++V+++AA+ R +A+DHVLF G PGLGKTTLAQ++A ELGVN
Sbjct: 11  VRPRLLDDFIGQDELRANMRVYLDAARERGQAMDHVLFYGNPGLGKTTLAQIMAGELGVN 70

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
             STSGPV+ ++GDLAA+LTNL   D+LF+DEIHR+ I VEE+LYPAMEDF+LDL++G+G
Sbjct: 71  LVSTSGPVLERSGDLAAILTNLGRHDLLFVDEIHRMPIAVEEVLYPAMEDFKLDLVIGQG 130

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P AR+VKI++  FTL+ ATTR+GLL++PL+DRFGI  RL +Y   DL  IV R A++ G 
Sbjct: 131 PGARTVKIDVEPFTLVGATTRIGLLSSPLRDRFGIISRLEYYTPADLARIVARTARIIGA 190

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T+E A EI  R+RGTPRIA RLLRRVRDFA V     I+ ++A  AL R+ +D+ G D
Sbjct: 191 NLTEEGAIEIGRRARGTPRIANRLLRRVRDFATVHAGGVISADLASEALGRMEVDESGLD 250

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           Q+D + L ++  ++GGGPVGI+T++   +E    IED+ EPY+IQ GF++RTPRGR+   
Sbjct: 251 QMDRKLLEVLIEHYGGGPVGIKTLAVACAEEVRTIEDIYEPYLIQCGFLKRTPRGRVATA 310

Query: 322 IAWQHLGI 329
            A++HL +
Sbjct: 311 KAYRHLNL 318


>gi|154504991|ref|ZP_02041729.1| hypothetical protein RUMGNA_02501 [Ruminococcus gnavus ATCC 29149]
 gi|153794874|gb|EDN77294.1| hypothetical protein RUMGNA_02501 [Ruminococcus gnavus ATCC 29149]
          Length = 334

 Score =  358 bits (920), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 175/332 (52%), Positives = 247/332 (74%), Gaps = 2/332 (0%)

Query: 2   MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M R  + + N+ +EDA I + LRP+ L ++ GQ +A   L+V+I AAK R EALDHVLF 
Sbjct: 1   MGRRIITTENL-EEDAKIENHLRPQLLSDYIGQAKAKKMLEVYIRAAKERDEALDHVLFY 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A E+GVN + TSGP I K G++AA+L NL++ DVLF+DEIHRL+  
Sbjct: 60  GPPGLGKTTLAGIIANEMGVNLKVTSGPAIEKPGEMAAILNNLQEHDVLFVDEIHRLNRQ 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMED+ +D+M+G+G +ARS++++L +FTL+ ATTR G+LT PL+DRFG+  RL
Sbjct: 120 VEEVLYPAMEDYAIDIMIGKGATARSIRLDLPKFTLVGATTRAGMLTAPLRDRFGVVNRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  E+L TI++R A++  + +  + A E+A RSRGTPR+A RLL+RVRDFA+V +   
Sbjct: 180 EFYTEEELMTIIKRSARVLNVEIDTKGALELAKRSRGTPRLANRLLKRVRDFAQVKYDGV 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           IT E+A+ AL  L +D+ G D  D   L ++   F GGPVG++T++A +SE    +ED+ 
Sbjct: 240 ITEEVANYALDLLDVDRYGLDHGDRMILQVMIEKFQGGPVGLDTLAASISEDSGTLEDVY 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EPY+++ GFIQRTPRGR++  +A++HLGI  P
Sbjct: 300 EPYLLKCGFIQRTPRGRVVTDLAYRHLGILPP 331


>gi|322807371|emb|CBZ04945.1| holliday junction DNA helicase RuvB [Clostridium botulinum H04402
           065]
          Length = 342

 Score =  358 bits (920), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 176/316 (55%), Positives = 233/316 (73%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           ++D +   LRP TL+E+ GQ +  +NL +FI+AAK R+E+LDHVLF GPPGLGKTTLA +
Sbjct: 12  EDDREQYSLRPTTLKEYIGQKKVKANLDIFIKAAKKRSESLDHVLFYGPPGLGKTTLANI 71

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +A E+  N + TSGP I KAGDLAA+LT+L D DVLFIDEIHRL+  +EEILYPAMED+ 
Sbjct: 72  IANEMTGNLKVTSGPAIEKAGDLAAILTSLTDYDVLFIDEIHRLNRSIEEILYPAMEDYA 131

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           LD+++G+G +A+S++++L +FTLI ATTRVGLLT+PL+DRFG+   + FY  E+L  IV 
Sbjct: 132 LDIVIGKGAAAKSIRLDLPKFTLIGATTRVGLLTSPLRDRFGMLCAMEFYTDEELMEIVV 191

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A +  + +  EAA EI  RSRGTPRIA RLL+RVRD+ +V H   I  + A AAL  L
Sbjct: 192 RSAAILNVNICREAAFEIGKRSRGTPRIANRLLKRVRDYCDVKHDGDIDLQGAKAALDLL 251

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +DK G D++D + L  I  NF GGPVG+ET++  + E  D IED+ EPY+IQ+GFI RT
Sbjct: 252 EVDKEGLDKIDNKILEAIIFNFKGGPVGLETLAYFIGEELDTIEDVYEPYLIQKGFIMRT 311

Query: 314 PRGRLLMPIAWQHLGI 329
           PRGR+    A+ H G+
Sbjct: 312 PRGRVASEKAYNHFGV 327


>gi|225011146|ref|ZP_03701608.1| Holliday junction DNA helicase RuvB [Flavobacteria bacterium
           MS024-3C]
 gi|225004708|gb|EEG42668.1| Holliday junction DNA helicase RuvB [Flavobacteria bacterium
           MS024-3C]
          Length = 340

 Score =  358 bits (920), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 183/321 (57%), Positives = 230/321 (71%), Gaps = 1/321 (0%)

Query: 9   SRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           S +++ E  DI   LRP +  +FTGQ +   NL +F++AA  R EALDH LF GPPGLGK
Sbjct: 9   SDHLTPESLDIEKALRPLSFNDFTGQEQVLENLSIFVKAANLREEALDHTLFHGPPGLGK 68

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127
           TTLA ++A ELGV  + TSGPV+ K GDLA LLTNLE+RDVLFIDEIHRLS IVEE LY 
Sbjct: 69  TTLAHILANELGVGIKITSGPVLDKPGDLAGLLTNLEERDVLFIDEIHRLSPIVEEYLYS 128

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           AMED+++D+M+  GP+ARSV+I+L+ FTLI ATTR GLLT P++ RFGI  RL +Y  E 
Sbjct: 129 AMEDYKIDIMIESGPNARSVQIHLNPFTLIGATTRSGLLTAPMRARFGIQSRLQYYSTEL 188

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           L TIV R A++  + +TDEAA EIA RSRGTPRI   LLRRVRDFA++     I  EIA 
Sbjct: 189 LSTIVTRSAEILKVPITDEAAIEIAGRSRGTPRICNALLRRVRDFAQIKGNGKIDLEIAQ 248

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
             L  L +D  G D++D + LT +   F GGPVGI T++  +SE  + IE++ EP++IQQ
Sbjct: 249 FGLGALHVDAHGLDEMDNKILTTLIDKFKGGPVGITTLATAVSESAETIEEVYEPFLIQQ 308

Query: 308 GFIQRTPRGRLLMPIAWQHLG 328
           GFI RTPRGR +   A+ HLG
Sbjct: 309 GFIMRTPRGREVTAAAYTHLG 329


>gi|86131987|ref|ZP_01050583.1| Holliday junction ATP-dependent DNA helicase RuvB [Dokdonia
           donghaensis MED134]
 gi|85817321|gb|EAQ38501.1| Holliday junction ATP-dependent DNA helicase RuvB [Dokdonia
           donghaensis MED134]
          Length = 340

 Score =  358 bits (920), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 180/321 (56%), Positives = 235/321 (73%), Gaps = 1/321 (0%)

Query: 9   SRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           +   S+E+ DI   LRP + ++F GQ +   NLKVF++AA  R EALDH LF GPPGLGK
Sbjct: 9   NEGYSREEVDIEKALRPLSFDDFAGQDQVLENLKVFVQAANLRGEALDHTLFHGPPGLGK 68

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127
           TTLA ++A ELGVN + TSGPV+ K GDLA LLTNL++RDVLFIDEIHRLS IVEE LY 
Sbjct: 69  TTLANILANELGVNIKITSGPVLDKPGDLAGLLTNLDERDVLFIDEIHRLSPIVEEYLYS 128

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           AMED+++D+M+  GP+AR+V+I+L+ FTL+ ATTR GLLT P++ RFGI  RL +Y  E 
Sbjct: 129 AMEDYRIDIMIETGPNARTVQIDLAPFTLVGATTRSGLLTAPMRARFGISSRLQYYTTEL 188

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           L TIVQR + + G+ ++ EAA EIA RSRGTPRIA  LLRRVRDFA++    +I  +IA 
Sbjct: 189 LTTIVQRSSSILGVPISMEAAIEIAGRSRGTPRIANALLRRVRDFAQIKGNGSIDIKIAK 248

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
            +L  L +D  G D++D + L  I   F GGPVG+ T++  +SE  + IE++ EP++IQQ
Sbjct: 249 YSLEALHVDAHGLDEMDNKILATIIDKFKGGPVGLTTLATAVSESAETIEEVYEPFLIQQ 308

Query: 308 GFIQRTPRGRLLMPIAWQHLG 328
           GFI RTPRGR +   A++HLG
Sbjct: 309 GFIMRTPRGREVTEDAYKHLG 329


>gi|73748445|ref|YP_307684.1| Holliday junction DNA helicase RuvB [Dehalococcoides sp. CBDB1]
 gi|147669225|ref|YP_001214043.1| Holliday junction DNA helicase B [Dehalococcoides sp. BAV1]
 gi|97190027|sp|Q3ZWZ9|RUVB_DEHSC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|189046030|sp|A5FRK7|RUVB_DEHSB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|73660161|emb|CAI82768.1| Holliday junction DNA helicase RuvB [Dehalococcoides sp. CBDB1]
 gi|146270173|gb|ABQ17165.1| Holliday junction DNA helicase RuvB [Dehalococcoides sp. BAV1]
          Length = 349

 Score =  358 bits (920), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 181/328 (55%), Positives = 237/328 (72%), Gaps = 1/328 (0%)

Query: 3   DREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           ++E L+S  +  +DA + + LRPR L +F GQ     NL V I+AAK R EALDHVL  G
Sbjct: 4   EKERLISGKLVTDDAKLDTSLRPRCLPDFIGQKRLKDNLGVAIQAAKQRGEALDHVLLYG 63

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTL+ ++A E+GVN R TSGP I + GDLAA+LTNL+  D+LFIDEIHRLS  V
Sbjct: 64  PPGLGKTTLSHIIALEMGVNIRITSGPAIERQGDLAAILTNLKPFDILFIDEIHRLSRNV 123

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMED+ LD+MVG+GP ARS+++ L  FTLI ATTR  +L+ PL+DRFG   RL+
Sbjct: 124 EEVLYPAMEDYALDIMVGKGPGARSLRLKLPHFTLIGATTRYAMLSAPLRDRFGSIFRLD 183

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY+ E +  IV+R A++ G+   +    +IA RSRGTPR+A RLLRRVRD+A+V     I
Sbjct: 184 FYDEEAIHDIVRRSARILGVEADENGLHQIACRSRGTPRVANRLLRRVRDYAQVKGNGLI 243

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T +IA  +L  L +DK+G D++D + L  I   FGGGPVG+ETI+A +SE  D I D+ E
Sbjct: 244 TADIAAESLACLEVDKLGLDEIDHKVLKTIIHKFGGGPVGLETIAAAISEEADTIMDVYE 303

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           PY++Q GF++RTPRGR    +A+QHL I
Sbjct: 304 PYLLQLGFLERTPRGRQATRLAYQHLSI 331


>gi|331085083|ref|ZP_08334170.1| Holliday junction ATP-dependent DNA helicase ruvB [Lachnospiraceae
           bacterium 9_1_43BFAA]
 gi|330408783|gb|EGG88248.1| Holliday junction ATP-dependent DNA helicase ruvB [Lachnospiraceae
           bacterium 9_1_43BFAA]
          Length = 333

 Score =  358 bits (920), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 173/322 (53%), Positives = 237/322 (73%), Gaps = 1/322 (0%)

Query: 14  QEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           +ED  I S LRP  L+++ GQ +A   LK++IEAAKAR E+LDHVLF GPPGLGKTTLA 
Sbjct: 12  EEDVKIESHLRPTLLKDYIGQEKAKETLKIYIEAAKARGESLDHVLFYGPPGLGKTTLAG 71

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++A E+ VN + TSGP I K G++AA+L NL++ DVLF+DEIHRL+  VEE+LYPAMED+
Sbjct: 72  IIANEMEVNVKITSGPAIEKPGEMAAILNNLQEGDVLFVDEIHRLNRQVEEVLYPAMEDY 131

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            +D+M+G+G  ARS++++L  FTL+ ATTR G+LT PL+DRFG+  RL FY  E+L+TI+
Sbjct: 132 VIDIMIGKGAGARSIRLDLPHFTLVGATTRAGMLTAPLRDRFGVVQRLEFYTEEELRTII 191

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R A + G+ +  + A E+A RSRGTPR+A RLL+RVRDFA+V +   IT E+A+ AL  
Sbjct: 192 MRSADVLGVEIDAKGALELAKRSRGTPRLANRLLKRVRDFAQVKYDGRITEEVANYALDL 251

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D+ G D +D   L  +   F GGPVG+ET++A + E    IED+ EPY+++ GFIQR
Sbjct: 252 LDVDRYGLDHVDRNLLLAMIEKFQGGPVGLETLAASIGEDSGTIEDVCEPYLLKNGFIQR 311

Query: 313 TPRGRLLMPIAWQHLGIDIPHR 334
           TPRGR++   A+ HLGI   ++
Sbjct: 312 TPRGRIVTDKAYAHLGISYKNQ 333


>gi|290769836|gb|ADD61609.1| putative protein [uncultured organism]
          Length = 362

 Score =  358 bits (920), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 182/311 (58%), Positives = 224/311 (72%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+TL E+ GQ +A  NLKVFIEAAK R E LDHVL  GPPGLGKTTL+ ++A ELGV+
Sbjct: 33  LRPKTLSEYIGQEKAKENLKVFIEAAKIRGETLDHVLLYGPPGLGKTTLSGIIANELGVS 92

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGP I K GDLAALLTNL + DVLFIDEIHRLS  VEEILYP+MEDF +D++ G+G
Sbjct: 93  MRITSGPAIEKPGDLAALLTNLNEGDVLFIDEIHRLSRSVEEILYPSMEDFAIDIITGKG 152

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
             A S  + L +FTL+ ATTR G LT PL+DRFG+ +RL  Y  E+L  IV+R A + G+
Sbjct: 153 QMAASYHLPLPKFTLVGATTRAGQLTAPLRDRFGVVLRLELYTPEELAQIVERSAGILGI 212

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  + A EIA RSRGTPRIA RLL+RVRDFA+V     IT E A  AL RL ID++G D
Sbjct: 213 KIEHDGALEIASRSRGTPRIANRLLKRVRDFAQVMSNGVITLETARTALDRLEIDELGLD 272

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           + D R L  I R + GGPVG+ET++A + E    IED+ EPY++Q GF+ RTPRGR +  
Sbjct: 273 RNDRRMLEAIVRFYNGGPVGLETLAAAIGEEAVTIEDVYEPYLLQIGFVSRTPRGRCITA 332

Query: 322 IAWQHLGIDIP 332
            A +HLG + P
Sbjct: 333 EACKHLGCEFP 343


>gi|302335492|ref|YP_003800699.1| Holliday junction DNA helicase subunit RuvB [Olsenella uli DSM
           7084]
 gi|301319332|gb|ADK67819.1| Holliday junction DNA helicase subunit RuvB [Olsenella uli DSM
           7084]
          Length = 356

 Score =  358 bits (920), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 175/326 (53%), Positives = 239/326 (73%), Gaps = 1/326 (0%)

Query: 8   LSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           +S  ++ +D D+   LRP TL+E+ GQ     NL+V I AAK R E LDHVLF GPPGLG
Sbjct: 28  VSAELTTDDLDVEHSLRPVTLDEYCGQERVRENLRVLIAAAKDRHETLDHVLFSGPPGLG 87

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTTLA VVA E+G   R+TSGP IA+ GDLAA+LTNLE+ DVLF+DEIHRL+  VEE+LY
Sbjct: 88  KTTLANVVANEMGARLRTTSGPAIARTGDLAAILTNLEEGDVLFVDEIHRLNHQVEEVLY 147

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           PAMEDF LD+++G+GP+ARS+++++  FTL+ ATTR GLLT PL+DRFGI  RL++Y IE
Sbjct: 148 PAMEDFFLDIVIGKGPAARSIRLDVPHFTLVGATTRTGLLTGPLRDRFGISYRLDYYTIE 207

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +L  IV+R A++ G+ + D+ A EIA RSRGTPR+A RLL+RVRD+A+V    ++  ++A
Sbjct: 208 ELAGIVRRSARILGVEIDDQGAAEIASRSRGTPRLANRLLKRVRDYAQVKAQGSVAWDVA 267

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
             AL    ID+MG D +D++ L  + R F G  VG+ TI++ + E    +ED+ EPY++Q
Sbjct: 268 AEALSFFEIDEMGLDWMDVKILEALTRTFRGRAVGLTTIASAVGEDPSTLEDVYEPYLLQ 327

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIP 332
           +G I RTP+GR    +A++HLG+  P
Sbjct: 328 RGLIVRTPQGRQATSLAFEHLGVASP 353


>gi|291542960|emb|CBL16070.1| Holliday junction DNA helicase, RuvB subunit [Ruminococcus bromii
           L2-63]
          Length = 362

 Score =  358 bits (920), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 182/311 (58%), Positives = 224/311 (72%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+TL E+ GQ +A  NLKVFIEAAK R E LDHVL  GPPGLGKTTL+ ++A ELGV+
Sbjct: 33  LRPKTLSEYIGQEKAKENLKVFIEAAKIRGETLDHVLLYGPPGLGKTTLSGIIANELGVS 92

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGP I K GDLAALLTNL + DVLFIDEIHRLS  VEEILYP+MEDF +D++ G+G
Sbjct: 93  MRITSGPAIEKPGDLAALLTNLNEGDVLFIDEIHRLSRSVEEILYPSMEDFAIDIITGKG 152

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
             A S  + L +FTL+ ATTR G LT PL+DRFG+ +RL  Y  E+L  IV+R A + G+
Sbjct: 153 QMAASYHLPLPKFTLVGATTRAGQLTAPLRDRFGVVLRLELYTPEELAQIVERSAGILGI 212

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  + A EIA RSRGTPRIA RLL+RVRDFA+V     IT E A  AL RL ID++G D
Sbjct: 213 KIEHDGALEIASRSRGTPRIANRLLKRVRDFAQVMSNGVITLETARTALDRLEIDELGLD 272

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           + D R L  I R + GGPVG+ET++A + E    IED+ EPY++Q GF+ RTPRGR +  
Sbjct: 273 RNDRRMLDAIVRFYNGGPVGLETLAAAIGEEAVTIEDVYEPYLLQIGFVSRTPRGRCITA 332

Query: 322 IAWQHLGIDIP 332
            A +HLG + P
Sbjct: 333 EACKHLGCEFP 343


>gi|325832021|ref|ZP_08165118.1| Holliday junction DNA helicase RuvB [Eggerthella sp. HGA1]
 gi|325486342|gb|EGC88794.1| Holliday junction DNA helicase RuvB [Eggerthella sp. HGA1]
          Length = 363

 Score =  358 bits (919), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 172/311 (55%), Positives = 234/311 (75%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L ++ GQ +   +L + IEAA+AR + +DH+LF GPPGLGKTTLA VVA ELG N
Sbjct: 50  LRPKRLGDYLGQTKIKESLAILIEAAQARGDVVDHILFSGPPGLGKTTLATVVANELGAN 109

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            ++TSGP I + GDLAA+LTNLE+ DVLFIDEIHRL+ +VEE+LYPA+EDF LD++VG+G
Sbjct: 110 IKTTSGPAIERTGDLAAILTNLEEGDVLFIDEIHRLNRMVEEVLYPALEDFALDIVVGKG 169

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS++++L RFTL+ ATTR GLLT PL+DRFGI  RL +Y  E+L +IV+R A +  +
Sbjct: 170 PAARSIRLDLPRFTLVGATTRTGLLTGPLRDRFGIVFRLQYYSPEELASIVRRSASILDV 229

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
           A+ ++ A EIA RSRGTPR+A RLL+RVRD+A+V     I  ++A  AL    +D +G D
Sbjct: 230 AIEEDGALEIARRSRGTPRLANRLLKRVRDWAQVRGDGIIDEDVAAQALSFFEVDALGLD 289

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D R L ++A  FGG PVG+ T+++ LSE  D +ED+ EPY++QQG + RTP+GR+   
Sbjct: 290 MMDNRILELLAVQFGGRPVGLTTLASALSEDTDTLEDVYEPYLMQQGLLVRTPKGRICTE 349

Query: 322 IAWQHLGIDIP 332
            A+ HLGI +P
Sbjct: 350 RAYDHLGIPVP 360


>gi|153939305|ref|YP_001392348.1| Holliday junction DNA helicase RuvB [Clostridium botulinum F str.
           Langeland]
 gi|168179564|ref|ZP_02614228.1| holliday junction DNA helicase RuvB [Clostridium botulinum NCTC
           2916]
 gi|168181760|ref|ZP_02616424.1| Holliday junction DNA helicase RuvB [Clostridium botulinum Bf]
 gi|170754942|ref|YP_001782705.1| Holliday junction DNA helicase RuvB [Clostridium botulinum B1 str.
           Okra]
 gi|226950499|ref|YP_002805590.1| Holliday junction DNA helicase RuvB [Clostridium botulinum A2 str.
           Kyoto]
 gi|237796526|ref|YP_002864078.1| Holliday junction DNA helicase RuvB [Clostridium botulinum Ba4 str.
           657]
 gi|166231485|sp|A7GHT8|RUVB_CLOBL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|229564226|sp|B1IMF3|RUVB_CLOBK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|254767420|sp|C1FKG1|RUVB_CLOBJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|259495661|sp|C3KTD2|RUVB_CLOB6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|152935201|gb|ABS40699.1| Holliday junction DNA helicase RuvB [Clostridium botulinum F str.
           Langeland]
 gi|169120154|gb|ACA43990.1| Holliday junction DNA helicase RuvB [Clostridium botulinum B1 str.
           Okra]
 gi|182669708|gb|EDT81684.1| holliday junction DNA helicase RuvB [Clostridium botulinum NCTC
           2916]
 gi|182675108|gb|EDT87069.1| Holliday junction DNA helicase RuvB [Clostridium botulinum Bf]
 gi|226841138|gb|ACO83804.1| Holliday junction DNA helicase RuvB [Clostridium botulinum A2 str.
           Kyoto]
 gi|229264087|gb|ACQ55120.1| Holliday junction DNA helicase RuvB [Clostridium botulinum Ba4 str.
           657]
 gi|295320340|gb|ADG00718.1| Holliday junction DNA helicase RuvB [Clostridium botulinum F str.
           230613]
          Length = 342

 Score =  358 bits (919), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 176/316 (55%), Positives = 233/316 (73%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           ++D +   LRP TL+E+ GQ +  +NL +FI+AAK R+E+LDHVLF GPPGLGKTTLA +
Sbjct: 12  EDDREQYSLRPTTLKEYIGQKKVKANLDIFIKAAKKRSESLDHVLFYGPPGLGKTTLANI 71

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +A E+  N + TSGP I KAGDLAA+LT+L D DVLFIDEIHRL+  +EEILYPAMED+ 
Sbjct: 72  IANEMTGNLKVTSGPAIEKAGDLAAILTSLTDYDVLFIDEIHRLNRSIEEILYPAMEDYA 131

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           LD+++G+G +A+S++++L +FTLI ATTRVGLLT+PL+DRFG+   + FY  E+L  IV 
Sbjct: 132 LDIVIGKGAAAKSIRLDLPKFTLIGATTRVGLLTSPLRDRFGMLCAMEFYTDEELMEIVV 191

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A +  + +  EAA EI  RSRGTPRIA RLL+RVRD+ +V H   I  + A AAL  L
Sbjct: 192 RSAAILNVNICREAAFEIGKRSRGTPRIANRLLKRVRDYCDVKHDGDIDLQGAKAALDLL 251

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +DK G D++D + L  I  NF GGPVG+ET++  + E  D IED+ EPY+IQ+GFI RT
Sbjct: 252 EVDKEGLDKIDNKILEAIIFNFKGGPVGLETLAYFIGEELDTIEDVYEPYLIQKGFIMRT 311

Query: 314 PRGRLLMPIAWQHLGI 329
           PRGR+    A+ H G+
Sbjct: 312 PRGRVASEKAYNHFGV 327


>gi|295109924|emb|CBL23877.1| Holliday junction DNA helicase, RuvB subunit [Ruminococcus obeum
           A2-162]
          Length = 334

 Score =  358 bits (919), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 172/332 (51%), Positives = 246/332 (74%), Gaps = 2/332 (0%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD+  +++ +V +ED  +   LRP+TL+E+ GQ +    LK++IEAAK R +ALDHVLF 
Sbjct: 1   MDKR-MITTDVIEEDLPLEGNLRPQTLDEYIGQEKTKKTLKIYIEAAKQRHDALDHVLFY 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTL+ ++A E+G + + TSGP I K G++AA+L NL++ D+LF+DEIHRL+  
Sbjct: 60  GPPGLGKTTLSGIIANEMGTHMKVTSGPAIEKPGEMAAILNNLQEGDILFVDEIHRLNRQ 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDF +D+M+G+G SARS++++L +FTL+ ATTR GLL+ PL+DRFG+   L
Sbjct: 120 VEEVLYPAMEDFAIDIMIGKGASARSIRLDLPKFTLVGATTRAGLLSAPLRDRFGVMHHL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY+ ++L+TI+ R A++ G+ +    A EIA RSRGTPR+A RLL+RVRDFA+V +   
Sbjct: 180 EFYDQKELQTIILRSAEVLGVEIDTRGAAEIAKRSRGTPRLANRLLKRVRDFAQVKYDGR 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           IT E+A  AL  L +D+ G D++D R L  +  NF GGPVG+ET++A + E    +ED+ 
Sbjct: 240 ITYEVAVFALDLLEVDQYGLDKIDRRILQTLIVNFQGGPVGLETLAAAIGEDAGTLEDVY 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EPY++Q GF+ RTPRGR    +A++HLG + P
Sbjct: 300 EPYLLQNGFLNRTPRGRTASALAYEHLGFEKP 331


>gi|258514398|ref|YP_003190620.1| Holliday junction DNA helicase RuvB [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257778103|gb|ACV61997.1| Holliday junction DNA helicase RuvB [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 336

 Score =  358 bits (919), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 177/324 (54%), Positives = 237/324 (73%), Gaps = 1/324 (0%)

Query: 7   LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           L++  +  ED+D+ + LRPR LE++ GQ +    L +FI AA+ARAE+LDHVL  GPPGL
Sbjct: 5   LVASGLHAEDSDLETSLRPRRLEQYIGQDKVKETLAIFIRAAQARAESLDHVLLYGPPGL 64

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLA ++A E+GVN R TSGP I + GDLAA+LTNL   DVLFIDEIHRLS  VEE+L
Sbjct: 65  GKTTLANIIAHEMGVNIRVTSGPAIERQGDLAAILTNLGQGDVLFIDEIHRLSRQVEEVL 124

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           YPAMEDF LD+M+G+GP ARSV++NL  FTL+ ATTR GLLT+PL+DRFG+  RL+FY  
Sbjct: 125 YPAMEDFALDIMIGKGPGARSVRLNLPSFTLVGATTRAGLLTSPLRDRFGVISRLDFYTT 184

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           ++L  I+ R A++  +A  ++ A  IA RSRGTPR+A RLL+RVRD+++V     I   +
Sbjct: 185 DELMQIILRTAQILRVAADEQGALAIASRSRGTPRVANRLLKRVRDYSQVRSDGMINGVL 244

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           AD AL  L ID +G D++D + L  +   FGGGPVG++T++A   E    IED++EP+++
Sbjct: 245 ADEALQFLEIDDLGLDEVDRKLLKAVIEKFGGGPVGLDTLAASTGEEAGTIEDVLEPFLL 304

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGI 329
           Q G + RTPRGR++   A+ HLGI
Sbjct: 305 QLGLLARTPRGRVVTQRAYSHLGI 328


>gi|296126244|ref|YP_003633496.1| Holliday junction DNA helicase RuvB [Brachyspira murdochii DSM
           12563]
 gi|296018060|gb|ADG71297.1| Holliday junction DNA helicase RuvB [Brachyspira murdochii DSM
           12563]
          Length = 345

 Score =  358 bits (919), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 175/329 (53%), Positives = 232/329 (70%), Gaps = 1/329 (0%)

Query: 2   MDREGLLS-RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD+E +++    S +  D + +RP+  ++F GQ    S LKVFI++A  R  +LDH+LF 
Sbjct: 1   MDKESIINAEETSYDKEDNNSIRPKGFDDFLGQNNIKSKLKVFIKSALKRDVSLDHILFY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++A E+G + ++TS P+I + GDLA++LT L ++D+LFIDEIHRL  +
Sbjct: 61  GPPGLGKTTLAQIIANEMGSSIKATSAPIIERPGDLASILTTLGEKDILFIDEIHRLRTV 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LY AMEDF +D+ VGEG SA+S ++ L  FTLI ATTR GLL+ PL DRFGI  RL
Sbjct: 121 VEEVLYSAMEDFFVDIKVGEGTSAKSFRVKLPHFTLIGATTRSGLLSTPLYDRFGIVERL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  EDL  IV+R +K   + +TD AA  IA RSRGTPRI  RLLRRV DFA V     
Sbjct: 181 EFYTNEDLANIVKRSSKFLDIDITDSAALSIASRSRGTPRIVNRLLRRVFDFATVHDVLK 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I  E A  +L +L IDK GF+ LD  YL  I +++ GGPVG++T+S  LSE  + IED+I
Sbjct: 241 IDEEFASNSLEKLGIDKNGFEALDKLYLNTIIKHYNGGPVGVDTLSVSLSEQIETIEDVI 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           EPY+IQ GFI+RTP+GR+    A+ +L +
Sbjct: 301 EPYLIQSGFIKRTPKGRVATNKAYSYLNL 329


>gi|325661159|ref|ZP_08149786.1| Holliday junction ATP-dependent DNA helicase ruvB [Lachnospiraceae
           bacterium 4_1_37FAA]
 gi|325472666|gb|EGC75877.1| Holliday junction ATP-dependent DNA helicase ruvB [Lachnospiraceae
           bacterium 4_1_37FAA]
          Length = 333

 Score =  358 bits (919), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 173/322 (53%), Positives = 237/322 (73%), Gaps = 1/322 (0%)

Query: 14  QEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           +ED  I S LRP  L+++ GQ +A   LK++IEAAKAR E+LDHVLF GPPGLGKTTLA 
Sbjct: 12  EEDVKIESHLRPTLLKDYIGQEKAKETLKIYIEAAKARGESLDHVLFYGPPGLGKTTLAG 71

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++A E+ VN + TSGP I K G++AA+L NL++ DVLF+DEIHRL+  VEE+LYPAMED+
Sbjct: 72  IIANEMEVNVKITSGPAIEKPGEMAAILNNLQEGDVLFVDEIHRLNRQVEEVLYPAMEDY 131

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            +D+M+G+G  ARS++++L  FTL+ ATTR G+LT PL+DRFG+  RL FY  E+L+TI+
Sbjct: 132 VIDIMIGKGAGARSIRLDLPHFTLVGATTRAGMLTAPLRDRFGVVQRLEFYTEEELRTII 191

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R A + G+ +  + A E+A RSRGTPR+A RLL+RVRDFA+V +   IT E+A+ AL  
Sbjct: 192 MRSADVLGVEIDAKGALELAKRSRGTPRLANRLLKRVRDFAQVKYDGRITEEVANYALDL 251

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D+ G D +D   L  +   F GGPVG+ET++A + E    IED+ EPY+++ GFIQR
Sbjct: 252 LDVDRYGLDHVDRNLLLAMIEKFQGGPVGLETLAASIGEDSGTIEDVCEPYLLKNGFIQR 311

Query: 313 TPRGRLLMPIAWQHLGIDIPHR 334
           TPRGR++   A+ HLGI   ++
Sbjct: 312 TPRGRVVTDKAYAHLGISYKNQ 333


>gi|94987629|ref|YP_595562.1| Holliday junction DNA helicase RuvB [Lawsonia intracellularis
           PHE/MN1-00]
 gi|122988756|sp|Q1MP36|RUVB_LAWIP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|94731878|emb|CAJ55241.1| Holliday junction resolvasome, helicase subunit [Lawsonia
           intracellularis PHE/MN1-00]
          Length = 341

 Score =  358 bits (919), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 171/308 (55%), Positives = 231/308 (75%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  L++F GQ E   NLKVF+ AA+ R +A+DH LF G PGLGKTTLAQ++A ELGVN
Sbjct: 32  IRPSRLDDFIGQEELRENLKVFLNAARDRGQAMDHTLFYGNPGLGKTTLAQIIAAELGVN 91

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
              TSGPV+ ++GDLAA+LTNL   D+LF+DEIHR+ I VEEILYPA+ED++LDL++G+G
Sbjct: 92  LICTSGPVLERSGDLAAILTNLSKHDILFVDEIHRMPITVEEILYPALEDYKLDLVIGQG 151

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+AR+VKI L  FTL+ ATTR+GL+++PL+DRFGI  RL FY  E+L  I+ R +++  +
Sbjct: 152 PAARTVKIELEPFTLVGATTRIGLISSPLRDRFGIISRLEFYTPEELSQIILRTSRILNV 211

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T + A EI  RSRGTPRIA RLLRRVRDFA V  + T+  E+ + AL +L +D+ G D
Sbjct: 212 PITKKGAIEIGRRSRGTPRIANRLLRRVRDFAAVFGSATVDEELVNHALQKLDVDEKGLD 271

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           Q+D + LT++   F GGPVGI+T++   SE    IED+ EPY+IQ GF++RTPRGR+   
Sbjct: 272 QMDRKLLTVLIELFAGGPVGIKTLAVACSEEVRTIEDIYEPYLIQCGFMKRTPRGRMATV 331

Query: 322 IAWQHLGI 329
            A++HL +
Sbjct: 332 KAYKHLNL 339


>gi|260887320|ref|ZP_05898583.1| holliday junction DNA helicase RuvB [Selenomonas sputigena ATCC
           35185]
 gi|330838927|ref|YP_004413507.1| Holliday junction DNA helicase RuvB [Selenomonas sputigena ATCC
           35185]
 gi|260862956|gb|EEX77456.1| holliday junction DNA helicase RuvB [Selenomonas sputigena ATCC
           35185]
 gi|329746691|gb|AEC00048.1| Holliday junction DNA helicase RuvB [Selenomonas sputigena ATCC
           35185]
          Length = 337

 Score =  358 bits (919), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 186/330 (56%), Positives = 246/330 (74%), Gaps = 1/330 (0%)

Query: 1   MMDREG-LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M + EG +++++   ED     LRPR L E+ GQ +A  NLKVF++AA  R EALDHVL 
Sbjct: 1   MEEMEGRIIAQDERTEDTWQYSLRPRKLAEYIGQKKAKENLKVFVQAALNRGEALDHVLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A ELGVNFR TSGP I ++GDLAALLTNL +RDVLFIDEIHRLS 
Sbjct: 61  YGPPGLGKTTLAGIIANELGVNFRITSGPAIERSGDLAALLTNLGERDVLFIDEIHRLSR 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEE+LY AMEDF LD+++G+GPSARS++++++ FTL+ ATT+ G L  PL+DRFG+  R
Sbjct: 121 SVEEVLYSAMEDFALDIIIGKGPSARSIRLDIAPFTLVGATTKAGALAAPLRDRFGVISR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +YE  +L  I++R A++  +++    A +IA RSRGTPR+A RLL+RVRDFA+V  A 
Sbjct: 181 LEYYEPSELMHIIERAAEILQISIERSGAEKIARRSRGTPRVANRLLKRVRDFAQVEGAA 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT  IADAAL RL +D++G D  D R L  + + F GGPVG+ET++A +SE  D IE +
Sbjct: 241 AITAAIADAALDRLEVDRIGLDHTDRRMLLTMIQKFAGGPVGLETLAAAISEESDTIEGV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
            EPY++Q GFI RTPRGR++   A++HLG+
Sbjct: 301 YEPYLLQLGFINRTPRGRIVTRAAYEHLGV 330


>gi|256827685|ref|YP_003151644.1| Holliday junction DNA helicase, RuvB subunit [Cryptobacterium
           curtum DSM 15641]
 gi|256583828|gb|ACU94962.1| Holliday junction DNA helicase, RuvB subunit [Cryptobacterium
           curtum DSM 15641]
          Length = 342

 Score =  358 bits (919), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 172/316 (54%), Positives = 236/316 (74%), Gaps = 4/316 (1%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPR LE++ GQ +   +L++ I+AA+ R + +DH+LF GPPGLGKTTLA VVA E+G +
Sbjct: 27  LRPRMLEDYLGQTKIKDSLRILIKAAQQREDVVDHILFSGPPGLGKTTLATVVANEMGAH 86

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            ++TSGP IA+ GDLAA+LTNLED DVLFIDEIHR++ +VEE+LYPA+ED+ LD++VG+G
Sbjct: 87  IKTTSGPAIARTGDLAAILTNLEDGDVLFIDEIHRMNRMVEEVLYPALEDYALDIVVGKG 146

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS++++L +FTLI ATTR GLLT PL+DRFGI  RLN+Y  E+L  IV R A++  +
Sbjct: 147 PAARSIRLDLPKFTLIGATTRTGLLTGPLRDRFGIAFRLNYYTPEELSAIVVRSAEILEV 206

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
           ++  E A EIA RSRGTPR+A RLL+RVRD+A+V    +I  + A  AL    +D +G D
Sbjct: 207 SIDAEGALEIARRSRGTPRLANRLLKRVRDWAQVKGNGSIDEDCAAEALSFFEVDSLGLD 266

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D R L ++ + FGG PVG+ T+++ LSE  D++ED+ EPY++QQG + RTP+GR    
Sbjct: 267 AVDNRILQLLCQQFGGQPVGLSTLASALSEDPDSLEDVYEPYLMQQGLLIRTPKGRQATD 326

Query: 322 IAWQHLGI----DIPH 333
            A+ HLGI    D PH
Sbjct: 327 RAYHHLGILAPSDKPH 342


>gi|138896158|ref|YP_001126611.1| Holliday junction DNA helicase RuvB [Geobacillus
           thermodenitrificans NG80-2]
 gi|166231496|sp|A4IRB2|RUVB_GEOTN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|134267671|gb|ABO67866.1| Holliday junction DNA helicase RuvB [Geobacillus
           thermodenitrificans NG80-2]
          Length = 333

 Score =  358 bits (919), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 174/313 (55%), Positives = 230/313 (73%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E+ GQ +   NL+VFIEAAK R E LDHVL  GPPGLGKTTLA ++A E+GV 
Sbjct: 21  LRPQYLHEYIGQDKVKENLQVFIEAAKLREETLDHVLLYGPPGLGKTTLAAIIANEMGVK 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R+TSGP + + GDLAALLT+LE  DVLFIDEIHRL   VEE+LYPAMED+ LD+ VG+G
Sbjct: 81  MRATSGPALERPGDLAALLTSLEPGDVLFIDEIHRLPRTVEEVLYPAMEDYCLDITVGKG 140

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P ARS++++L  FTL+ ATTR G L+ PL+DRFG+  RL +Y+++ L  I++R A +  +
Sbjct: 141 PEARSLRLDLPPFTLVGATTRAGALSAPLRDRFGVISRLEYYQVDQLAQIIERAAAILHI 200

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + +EAA E+A R+RGTPRIA RLLRRVRDFA+V     IT  +A  AL RL +D++G D
Sbjct: 201 IINNEAALELARRARGTPRIANRLLRRVRDFAQVRGDGEITLPLAVEALERLQVDRLGLD 260

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  I   F GGPVG+ET++A + E    IE++ EPY++Q G +QRTPRGR+  P
Sbjct: 261 HIDHKLLLAIIEKFAGGPVGLETMAAVIGEEAQTIEEVYEPYLLQIGLLQRTPRGRVATP 320

Query: 322 IAWQHLGIDIPHR 334
            A+ HLG+++P R
Sbjct: 321 AAYAHLGMEVPKR 333


>gi|242280345|ref|YP_002992474.1| Holliday junction DNA helicase RuvB [Desulfovibrio salexigens DSM
           2638]
 gi|242123239|gb|ACS80935.1| Holliday junction DNA helicase RuvB [Desulfovibrio salexigens DSM
           2638]
          Length = 327

 Score =  358 bits (918), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 176/306 (57%), Positives = 228/306 (74%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L +F GQ +   NL VFI+AA+ R  A+DH LF G PGLGKTTLA+++A ELGVN
Sbjct: 10  IRPQRLTDFIGQDDLRDNLDVFIQAARGRGNAMDHALFYGNPGLGKTTLARIIASELGVN 69

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
             STSGPV+ ++GDLAA+LTNL   D+LFIDEIHR+   VEE+LYPAMEDF +DL++G+G
Sbjct: 70  LISTSGPVLERSGDLAAILTNLSRNDILFIDEIHRVPATVEEVLYPAMEDFNIDLIIGQG 129

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+AR+VKI+L  FTL+ ATTR+GLLT+PL+DRFG   RL FY  E+L  IV R A++  L
Sbjct: 130 PAARTVKIDLEPFTLVGATTRLGLLTSPLRDRFGCIFRLEFYSPEELARIVTRAARIFDL 189

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            VTDE A  I  RSRGTPRIA RLLRRVRDFA V     ++ E+AD AL +L +D +G D
Sbjct: 190 KVTDEGALIIGKRSRGTPRIANRLLRRVRDFATVHGDGVVSGELADMALNKLDVDPLGLD 249

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L+++   FGGGPVG++TI+   SE    IE++ EPY+IQ GF++RTPRGR+   
Sbjct: 250 YMDRKILSILIDQFGGGPVGVKTIAVACSEEVRTIEEIYEPYLIQCGFMKRTPRGRVATA 309

Query: 322 IAWQHL 327
            A+QHL
Sbjct: 310 RAYQHL 315


>gi|170760872|ref|YP_001788390.1| Holliday junction DNA helicase RuvB [Clostridium botulinum A3 str.
           Loch Maree]
 gi|238688789|sp|B1L0B2|RUVB_CLOBM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|169407861|gb|ACA56272.1| Holliday junction DNA helicase RuvB [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 342

 Score =  358 bits (918), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 176/316 (55%), Positives = 232/316 (73%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           ++D +   LRP TL+E+ GQ +  +NL +FI+AAK R E+LDHVLF GPPGLGKTTLA +
Sbjct: 12  EDDKEQYSLRPTTLKEYIGQKKVKANLDIFIKAAKKRNESLDHVLFYGPPGLGKTTLANI 71

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +A E+  N + TSGP I KAGDLAA+LT+L D DVLFIDEIHRL+  +EEILYPAMED+ 
Sbjct: 72  IANEMTGNLKVTSGPAIEKAGDLAAILTSLTDYDVLFIDEIHRLNRSIEEILYPAMEDYA 131

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           LD+++G+G +A+S++++L +FTLI ATTRVGLLT+PL+DRFG+   + FY  E+L  IV 
Sbjct: 132 LDIVIGKGAAAKSIRLDLPKFTLIGATTRVGLLTSPLRDRFGMLCAMEFYTDEELMEIVV 191

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A +  + +  EAA EI  RSRGTPRIA RLL+RVRD+ +V H   I  + A AAL  L
Sbjct: 192 RSAAILNVNICREAAFEIGKRSRGTPRIANRLLKRVRDYCDVKHDGDIDLQGAKAALDLL 251

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +DK G D++D + L  I  NF GGPVG+ET++  + E  D IED+ EPY+IQ+GFI RT
Sbjct: 252 EVDKEGLDKIDNKILEAIIFNFKGGPVGLETLAYFIGEELDTIEDVYEPYLIQKGFIMRT 311

Query: 314 PRGRLLMPIAWQHLGI 329
           PRGR+    A+ H G+
Sbjct: 312 PRGRVASEKAYNHFGV 327


>gi|281424884|ref|ZP_06255797.1| holliday junction DNA helicase RuvB [Prevotella oris F0302]
 gi|299142290|ref|ZP_07035423.1| holliday junction DNA helicase RuvB [Prevotella oris C735]
 gi|281401002|gb|EFB31833.1| holliday junction DNA helicase RuvB [Prevotella oris F0302]
 gi|298576379|gb|EFI48252.1| holliday junction DNA helicase RuvB [Prevotella oris C735]
          Length = 344

 Score =  358 bits (918), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 176/318 (55%), Positives = 231/318 (72%), Gaps = 1/318 (0%)

Query: 12  VSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           +S E+ D  + LRP    +F GQ +   NL++F+EAAK R E LDH L  GPPGLGKTTL
Sbjct: 12  LSTEEKDFENALRPLRFADFNGQKKVVENLEIFVEAAKYRGEPLDHTLLYGPPGLGKTTL 71

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           + ++A ELGV F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS +VEE LY AME
Sbjct: 72  SNIIANELGVGFKITSGPVLDKPGDLAGILTSLEPNDVLFIDEIHRLSPVVEEYLYSAME 131

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           D+++D+M+ +GPSARS++I+L+ FTL+ ATTR G+LT PL+ RFGI + L +Y+ E LK 
Sbjct: 132 DYRIDIMIDKGPSARSIQIDLNPFTLVGATTRSGMLTAPLRARFGINMHLEYYDPETLKR 191

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           I++R A L  + + DEAA EI+ RSRGTPRIA  LLRRVRDFA+V    TIT EIA   L
Sbjct: 192 IIRRSAMLLKVPIDDEAAIEISRRSRGTPRIANALLRRVRDFAQVKGNGTITNEIAHIGL 251

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
             L ID+ G D++D + L  I   F GGPVG+ TI+  + E    +ED+ EP++I +GFI
Sbjct: 252 QSLNIDQYGLDEIDNKILLTIIDKFRGGPVGVSTIATAIGEDAGTVEDVYEPFLIMEGFI 311

Query: 311 QRTPRGRLLMPIAWQHLG 328
           +RTPRGR+  P+A++HLG
Sbjct: 312 KRTPRGRMATPLAYEHLG 329


>gi|313114598|ref|ZP_07800106.1| Holliday junction DNA helicase RuvB [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310623062|gb|EFQ06509.1| Holliday junction DNA helicase RuvB [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 351

 Score =  358 bits (918), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 171/327 (52%), Positives = 234/327 (71%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           ++   ++  D++ + LRP+ LE++ GQ +   NLK+++EAAK R E +DH+L  GPPGLG
Sbjct: 12  MMQPGMTAADSEENNLRPQHLEDYIGQEKVKQNLKIYLEAAKRRGEPMDHILLYGPPGLG 71

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTTLA ++A E+GV  R TSGP I K GDLAALLTNL++ DVLFIDEIHRLS  VEE+LY
Sbjct: 72  KTTLAGIIANEMGVQIRITSGPAIEKPGDLAALLTNLQEGDVLFIDEIHRLSRQVEEVLY 131

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           PA+ED+ LD+M+G+GPSA+S++INL RFTL+ ATTR G +T PL+DRFG+ ++L  Y  +
Sbjct: 132 PALEDYALDIMIGKGPSAQSIRINLPRFTLVGATTRAGQITGPLRDRFGVLLKLELYSPD 191

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +L  I+QR A +    +T E A E+A RSRGTPR+A R L+R+RDFA V     I R++A
Sbjct: 192 ELSKIIQRSAGILDQPITPEGAYELAKRSRGTPRVANRFLKRIRDFATVLGDGIIDRDVA 251

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
              L R+ +D +G D+LD   L  I   + GGPVG+ET++A L E    +EDL EPY++Q
Sbjct: 252 LMGLKRMDVDALGLDELDRSMLRAIIEMYNGGPVGLETLAAALGEESVTLEDLCEPYLMQ 311

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            GF+ RTPRGR    +A++HLG+  P 
Sbjct: 312 MGFLTRTPRGRCATRLAYEHLGLKAPE 338


>gi|93005515|ref|YP_579952.1| Holliday junction DNA helicase B [Psychrobacter cryohalolentis K5]
 gi|92393193|gb|ABE74468.1| Holliday junction DNA helicase subunit RuvB [Psychrobacter
           cryohalolentis K5]
          Length = 358

 Score =  358 bits (918), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 185/312 (59%), Positives = 238/312 (76%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           DA  + +RP  L E+ GQ      ++VFI+AA+AR EALDH L  GPPGLGKTTLA ++A
Sbjct: 46  DAPDANIRPALLAEYIGQPVVREQMEVFIQAARARDEALDHTLIFGPPGLGKTTLANIIA 105

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           RE+G N RSTSGPV+ +AGDLAA+LTNLE  DVLFIDEIHRLS ++EEILYPAMEDFQLD
Sbjct: 106 REMGGNLRSTSGPVLERAGDLAAMLTNLEAGDVLFIDEIHRLSPVIEEILYPAMEDFQLD 165

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           +M+GEGP+ARS+K++L  FTL+AATTR GLLT+PL+DRFGI  RL FY I DL TIV R 
Sbjct: 166 IMIGEGPAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRLEFYNIADLTTIVSRA 225

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255
           A+L  + ++++ A EIA R+RGTPRIA RLLRRVRD+A+V    +I   IA +AL  LA+
Sbjct: 226 ARLMRVPMSEDGAVEIARRARGTPRIANRLLRRVRDYAQVRGDGSINGAIAGSALDMLAV 285

Query: 256 DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR 315
           D+ G D LD RY+ ++   F GGP G+E ++A ++E R  +ED+IEPY+IQQG++ RT R
Sbjct: 286 DRRGLDHLDRRYIEILHERFDGGPAGVEAVAAAMAEDRGTLEDVIEPYLIQQGYVLRTAR 345

Query: 316 GRLLMPIAWQHL 327
           GR+L  +A   +
Sbjct: 346 GRVLTQMAIDQM 357


>gi|317488562|ref|ZP_07947107.1| Holliday junction DNA helicase RuvB [Eggerthella sp. 1_3_56FAA]
 gi|316912304|gb|EFV33868.1| Holliday junction DNA helicase RuvB [Eggerthella sp. 1_3_56FAA]
          Length = 360

 Score =  358 bits (918), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 171/312 (54%), Positives = 233/312 (74%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L ++ GQ +   +L + I AA+AR + +DH+LF GPPGLGKTTLA VVA ELG N
Sbjct: 47  LRPKRLGDYLGQTKIKESLAILIGAAQARGDVVDHILFSGPPGLGKTTLAAVVANELGAN 106

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            ++TSGP I + GDLAA+LTNLE+ DVLFIDEIHRL+ +VEE+LYPA+EDF LD++VG+G
Sbjct: 107 IKTTSGPAIERTGDLAAILTNLEEGDVLFIDEIHRLNRMVEEVLYPALEDFALDIVVGKG 166

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS++++L RFTL+ ATTR GLLT PL+DRFGI  RL +Y  E+L +IV+R A +  +
Sbjct: 167 PAARSIRLDLPRFTLVGATTRTGLLTGPLRDRFGIAFRLQYYSPEELASIVRRSASILDV 226

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
           A+ ++ A EIA RSRGTPR+A RLL+RVRD+A+V     I  ++A  AL    +D +G D
Sbjct: 227 AIEEDGALEIARRSRGTPRLANRLLKRVRDWAQVRGDGVIDEDVAAQALSFFEVDALGLD 286

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D R L ++A  FGG PVG+ T+++ LSE  D +ED+ EPY++QQG + RTP+GR+   
Sbjct: 287 AVDNRILELLAVQFGGRPVGLTTLASALSEDTDTLEDVYEPYLMQQGLLVRTPKGRICTE 346

Query: 322 IAWQHLGIDIPH 333
            A+ HLGI +P 
Sbjct: 347 RAYDHLGIKVPS 358


>gi|269837350|ref|YP_003319578.1| Holliday junction DNA helicase RuvB [Sphaerobacter thermophilus DSM
           20745]
 gi|269786613|gb|ACZ38756.1| Holliday junction DNA helicase RuvB [Sphaerobacter thermophilus DSM
           20745]
          Length = 348

 Score =  358 bits (918), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 180/328 (54%), Positives = 241/328 (73%), Gaps = 3/328 (0%)

Query: 7   LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           ++S  +  ED  + + LRPR L E+ GQ +    L + I+AA+AR E LDH+L  GPPGL
Sbjct: 5   VVSGKIRDEDEPLEASLRPRRLAEYIGQEKVKEGLLISIQAAQARGECLDHLLLYGPPGL 64

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLA +VA E+GVN R TSGP I +AGDL ++LTNL+  DVLFIDEIHRL+ +VEE+L
Sbjct: 65  GKTTLASIVAAEMGVNLRITSGPAIERAGDLVSILTNLKPGDVLFIDEIHRLNRVVEEVL 124

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           YPAMEDF +D+++G+GP+ARS+++NL  FTL+ ATTR+ LLT+PL+DRFG   RL FY +
Sbjct: 125 YPAMEDFAVDIVLGKGPAARSMRLNLPPFTLVGATTRLALLTSPLRDRFGSTYRLEFYSL 184

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           E ++ IV R A++ G+A+ ++ A EIA R+RGTPRIA RLLRRVRD+A+V     IT ++
Sbjct: 185 EAMQKIVTRAARILGVAIDEDGAREIAARARGTPRIANRLLRRVRDYAQVRADGVITADV 244

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           A AAL  L +D +G D +D   L  I   F GGPVG+ET++A  SE  D IED+ EPY+I
Sbjct: 245 ARAALEMLEVDHLGLDDVDRVILRTIVEKFDGGPVGVETLAAATSEEADTIEDVYEPYLI 304

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           Q GF+QRTPRGR+    A++HL  D+P+
Sbjct: 305 QLGFLQRTPRGRVATRRAYEHL--DLPY 330


>gi|298529946|ref|ZP_07017348.1| Holliday junction DNA helicase RuvB [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509320|gb|EFI33224.1| Holliday junction DNA helicase RuvB [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 319

 Score =  358 bits (918), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 175/321 (54%), Positives = 233/321 (72%), Gaps = 3/321 (0%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           N S  D  +   RP TL++F GQ +  SNLKV++ AA  R   LDH L  G PGLGKTT+
Sbjct: 2   NSSTNDEHV---RPHTLDQFVGQEDVRSNLKVYLGAALERGLHLDHTLLYGNPGLGKTTM 58

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           A+++A ELGVN   T+GPV+ ++ DLAA+LTNL   DVLFIDEIHR+   VEEILYPA+E
Sbjct: 59  ARILAGELGVNIVCTTGPVLERSADLAAILTNLSRNDVLFIDEIHRMPATVEEILYPALE 118

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           DF+LDL++G+GP AR+VKI+L  FTL+ ATTR+GLLT+PL+DRFG+  RL+FY  E+L T
Sbjct: 119 DFKLDLILGQGPGARTVKIDLEPFTLVGATTRIGLLTSPLRDRFGVICRLDFYAPEELAT 178

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           IV+R A++ G+ +T + A EI  RSRGTPRIA RLLRRV DFA V   + I  ++A  AL
Sbjct: 179 IVERSARILGINITSDGALEIGRRSRGTPRIANRLLRRVHDFAVVGRQEVIDSQVASRAL 238

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
            R+ +D +G DQ+D + L  I R F GGPVG++T++   SE    +ED+ EPY+IQ GF+
Sbjct: 239 KRMDVDPLGLDQMDRKILDCIIRQFAGGPVGVKTVAVACSEEVRTLEDIYEPYLIQCGFL 298

Query: 311 QRTPRGRLLMPIAWQHLGIDI 331
           +RTPRGR+  P A++HL + +
Sbjct: 299 KRTPRGRVATPRAYEHLNLPV 319


>gi|327398424|ref|YP_004339293.1| Holliday junction ATP-dependent DNA helicase ruvB [Hippea maritima
           DSM 10411]
 gi|327181053|gb|AEA33234.1| Holliday junction ATP-dependent DNA helicase ruvB [Hippea maritima
           DSM 10411]
          Length = 322

 Score =  358 bits (918), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 167/306 (54%), Positives = 229/306 (74%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E+ GQ     NL + IEAAK R EAL+H LF GPPGLGKTTLA +VA+++  N
Sbjct: 10  LRPQNLNEYIGQKNIVKNLSLAIEAAKKRNEALEHCLFYGPPGLGKTTLANIVAKQMNAN 69

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
             +TSGP + K GD+AA+LTNL ++D+LFIDEIHRL+  VEE LY A+EDF+LD++VG+G
Sbjct: 70  IITTSGPAVEKVGDIAAILTNLNEKDILFIDEIHRLNRAVEETLYSALEDFKLDIIVGQG 129

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P AR+++I+L  FTLI ATTR+GLLT+PL+DRFGI +RL+FY  +DL  IV+R A + GL
Sbjct: 130 PGARTIRIDLPHFTLIGATTRIGLLTSPLRDRFGIILRLDFYSAKDLTEIVKRSASILGL 189

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + ++AA  IA RSRGTPRIA +LLRRVRD +++    +I  E A  AL  L ID+ G D
Sbjct: 190 DIEEDAANLIAERSRGTPRIANKLLRRVRDLSQIESKDSIDVETAKKALSMLEIDENGLD 249

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            LD +Y+  +   F GGPVGIET+SA + E +  +ED++EPY++Q G+++RTP+GR+  P
Sbjct: 250 YLDKKYILTLIEKFNGGPVGIETLSASIGEDKSTLEDVVEPYLLQIGYLKRTPKGRVATP 309

Query: 322 IAWQHL 327
           +A +++
Sbjct: 310 LALKNV 315


>gi|225620634|ref|YP_002721892.1| Holliday junction DNA helicase B [Brachyspira hyodysenteriae WA1]
 gi|254767413|sp|C0R250|RUVB_BRAHW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|225215454|gb|ACN84188.1| Holliday junction DNA helicase B [Brachyspira hyodysenteriae WA1]
          Length = 346

 Score =  358 bits (918), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 175/328 (53%), Positives = 231/328 (70%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD+E + +   +  D   + +RP+  ++F GQ    S LKVFI +AK R  +LDH+LF G
Sbjct: 1   MDKESITNAEENSYDKPNNNIRPQGFDDFLGQNNIKSKLKVFINSAKKREVSLDHILFYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLAQ++A E+G N ++TS P+I + GDLA++LT L ++D+LFIDEIHRL  +V
Sbjct: 61  PPGLGKTTLAQIIANEMGSNIKATSAPIIERPGDLASILTTLGEKDILFIDEIHRLRTVV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMEDF +D+ VGEG SA+S ++ L  FTLI ATTR GLL+ PL DRFGI  RL 
Sbjct: 121 EEVLYSAMEDFFVDIKVGEGTSAKSFRVKLPHFTLIGATTRSGLLSTPLYDRFGIVERLE 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY  EDL  IV+R ++   + +TDEAA  IA RSRGTPRI  RLLRRV DFA V     I
Sbjct: 181 FYTNEDLANIVKRSSEFLNINITDEAAISIASRSRGTPRIVNRLLRRVFDFATVHDVLKI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
             + A  +L +L IDK GF+ LD  YL  I +++ GGPVG++T+S  LSE  + IED+IE
Sbjct: 241 DEKFACDSLEKLGIDKNGFEALDKLYLNTIIKHYNGGPVGVDTLSVSLSEQIETIEDVIE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           PY+IQ GFI+RTP+GR+    A+ +L +
Sbjct: 301 PYLIQCGFIKRTPKGRVATNKAYGYLNL 328


>gi|172046248|sp|Q1QCY5|RUVB_PSYCK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
          Length = 331

 Score =  357 bits (917), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 185/312 (59%), Positives = 238/312 (76%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           DA  + +RP  L E+ GQ      ++VFI+AA+AR EALDH L  GPPGLGKTTLA ++A
Sbjct: 19  DAPDANIRPALLAEYIGQPVVREQMEVFIQAARARDEALDHTLIFGPPGLGKTTLANIIA 78

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           RE+G N RSTSGPV+ +AGDLAA+LTNLE  DVLFIDEIHRLS ++EEILYPAMEDFQLD
Sbjct: 79  REMGGNLRSTSGPVLERAGDLAAMLTNLEAGDVLFIDEIHRLSPVIEEILYPAMEDFQLD 138

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           +M+GEGP+ARS+K++L  FTL+AATTR GLLT+PL+DRFGI  RL FY I DL TIV R 
Sbjct: 139 IMIGEGPAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRLEFYNIADLTTIVSRA 198

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255
           A+L  + ++++ A EIA R+RGTPRIA RLLRRVRD+A+V    +I   IA +AL  LA+
Sbjct: 199 ARLMRVPMSEDGAVEIARRARGTPRIANRLLRRVRDYAQVRGDGSINGAIAGSALDMLAV 258

Query: 256 DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR 315
           D+ G D LD RY+ ++   F GGP G+E ++A ++E R  +ED+IEPY+IQQG++ RT R
Sbjct: 259 DRRGLDHLDRRYIEILHERFDGGPAGVEAVAAAMAEDRGTLEDVIEPYLIQQGYVLRTAR 318

Query: 316 GRLLMPIAWQHL 327
           GR+L  +A   +
Sbjct: 319 GRVLTQMAIDQM 330


>gi|317504287|ref|ZP_07962276.1| crossover junction ATP-dependent DNA helicase RuvB [Prevotella
           salivae DSM 15606]
 gi|315664599|gb|EFV04277.1| crossover junction ATP-dependent DNA helicase RuvB [Prevotella
           salivae DSM 15606]
          Length = 344

 Score =  357 bits (917), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 175/318 (55%), Positives = 231/318 (72%), Gaps = 1/318 (0%)

Query: 12  VSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           +S E+ D  + LRP    +F GQ +   NL++F+EAAK R E LDH L  GPPGLGKTTL
Sbjct: 12  ISTEEKDFENALRPLRFVDFNGQKKVVENLEIFVEAAKYRGEPLDHTLLYGPPGLGKTTL 71

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           + ++A ELGV F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS +VEE LY AME
Sbjct: 72  SNIIANELGVGFKITSGPVLDKPGDLAGILTSLEPNDVLFIDEIHRLSPVVEEYLYSAME 131

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           D+++D+M+ +GPSARS++++L+ FTL+ ATTR G+LT PL+ RFGI + L +Y+ E LK 
Sbjct: 132 DYRIDIMIDKGPSARSIQLDLNPFTLVGATTRSGMLTAPLRARFGINMHLEYYDPETLKR 191

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           I++R A L  + + DEAA EI+ RSRGTPRIA  LLRRVRDFA+V    TIT EIA   L
Sbjct: 192 IIRRSAMLLKVPIDDEAAIEISRRSRGTPRIANALLRRVRDFAQVKGNGTITNEIAHIGL 251

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
             L ID+ G D++D + L  I   F GGPVG+ TI+  + E    +ED+ EP++I +GFI
Sbjct: 252 QSLNIDQYGLDEIDNKILLTIIDKFKGGPVGVSTIATAIGEDAGTVEDVYEPFLIMEGFI 311

Query: 311 QRTPRGRLLMPIAWQHLG 328
           +RTPRGR+  P+A++HLG
Sbjct: 312 KRTPRGRMATPLAYEHLG 329


>gi|108804163|ref|YP_644100.1| Holliday junction DNA helicase RuvB [Rubrobacter xylanophilus DSM
           9941]
 gi|122976014|sp|Q1AWE0|RUVB_RUBXD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|108765406|gb|ABG04288.1| Holliday junction DNA helicase subunit RuvB [Rubrobacter
           xylanophilus DSM 9941]
          Length = 355

 Score =  357 bits (917), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 170/317 (53%), Positives = 232/317 (73%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E+ D   LRPRTL+EF GQ     NL++F+EAAK R E LDH+L  GPPGLGKT+L +++
Sbjct: 35  EEDDEPTLRPRTLDEFVGQERLKENLRIFVEAAKQRGEPLDHMLLAGPPGLGKTSLCRIL 94

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A E+GV    TSGP + +AGD+AA+LT+LE+ D LFIDEIHRL+  +EE+LYPAMEDF +
Sbjct: 95  AAEMGVQLHPTSGPSLERAGDMAAILTSLEEGDFLFIDEIHRLNRQIEEVLYPAMEDFAI 154

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D+++G+GPSAR+++++L RFTL+ ATTR GL+T PL DRFG   RL++YE  +L+ IV R
Sbjct: 155 DIVLGQGPSARTIRMDLPRFTLVGATTRTGLMTKPLLDRFGFSARLDYYEPHELEKIVVR 214

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A++ G+ +T+  A ++A RSRGTPR+A RLL+RVRD+A+V    TI  E A+AAL    
Sbjct: 215 NARILGVPITEGGARQLARRSRGTPRVANRLLKRVRDYAQVVGDGTIDEETANAALEMQG 274

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D +G D+ D  YL++I   F GGPVG+ T+S  L E RD +ED+ EPY++Q G IQRT 
Sbjct: 275 VDHLGLDRTDREYLSLIIEKFDGGPVGVGTLSVALGEARDTVEDVYEPYLLQSGLIQRTS 334

Query: 315 RGRLLMPIAWQHLGIDI 331
           RGR+    A+ HLG  +
Sbjct: 335 RGRVATRHAYAHLGFPV 351


>gi|325679018|ref|ZP_08158616.1| Holliday junction DNA helicase RuvB [Ruminococcus albus 8]
 gi|324109522|gb|EGC03740.1| Holliday junction DNA helicase RuvB [Ruminococcus albus 8]
          Length = 345

 Score =  357 bits (917), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 174/308 (56%), Positives = 229/308 (74%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP +L E+ GQ +   N+K++I+AAK R ++LDHVL  GPPGLGKTTLA ++ARE+GVN
Sbjct: 30  LRPLSLNEYIGQDKVKENMKIYIDAAKRRGDSLDHVLLYGPPGLGKTTLANIIAREMGVN 89

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R+TSGP I K GDLAALL +LE  DVLFIDEIHRLS  VEEILYPAMED  +D+++G+G
Sbjct: 90  IRTTSGPAIEKPGDLAALLASLEKGDVLFIDEIHRLSRQVEEILYPAMEDCVVDIIMGKG 149

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS++++L+RFTLI ATTR G L+ PL+DRFG+ + +  Y  E L  IV+R A + G+
Sbjct: 150 PAARSIRVDLNRFTLIGATTRSGQLSAPLRDRFGMLMHMELYTTEQLTDIVKRSATILGV 209

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
              D+ A EIA R+RGTPRIA R L+RVRDFAEV     ITR+IA  AL R+ +D +G D
Sbjct: 210 GCDDDGAEEIAGRARGTPRIANRYLKRVRDFAEVIGDGRITRDIAGLALNRMEVDSLGLD 269

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            LD R L MI + + GGPVG+ T++A + E    +ED+ EPY++Q GF+ +TPRGR+   
Sbjct: 270 SLDRRLLEMIIKGYNGGPVGLATLAAAIGEEAVTLEDVCEPYLMQLGFLAKTPRGRVATQ 329

Query: 322 IAWQHLGI 329
           +A+ HLGI
Sbjct: 330 LAYDHLGI 337


>gi|293375247|ref|ZP_06621531.1| Holliday junction DNA helicase RuvB [Turicibacter sanguinis PC909]
 gi|325840657|ref|ZP_08167108.1| Holliday junction DNA helicase RuvB [Turicibacter sp. HGF1]
 gi|292646145|gb|EFF64171.1| Holliday junction DNA helicase RuvB [Turicibacter sanguinis PC909]
 gi|325490221|gb|EGC92555.1| Holliday junction DNA helicase RuvB [Turicibacter sp. HGF1]
          Length = 335

 Score =  357 bits (917), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 176/311 (56%), Positives = 229/311 (73%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP  L ++ GQ     NL++FIEAAK R E+LDHVL  GPPGLGKTTLA ++A E+GVN
Sbjct: 23  LRPERLNQYIGQTAVKENLRIFIEAAKNRNESLDHVLLFGPPGLGKTTLATIIANEMGVN 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            ++TSGP+I ++GDLAA+L+ LE  DVLFIDEIHRL   +EE+LYPAMED+ LD++VG+ 
Sbjct: 83  IKTTSGPMIERSGDLAAILSVLEPGDVLFIDEIHRLPKSIEEVLYPAMEDYVLDIVVGKD 142

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            SARS++++L+ FTL+ ATTR G L+ PL+DRFG+  RL +Y  E L +IV+R A +  +
Sbjct: 143 ESARSIRVDLAPFTLVGATTRAGDLSAPLRDRFGVINRLEYYTEEQLTSIVKRTAIVYEI 202

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + D AA E+A RSRGTPRIA RL RRVRD+AEV     IT +IA  AL RL ID++G D
Sbjct: 203 EMDDLAALELARRSRGTPRIANRLFRRVRDYAEVVGNGVITHDIAKLALDRLDIDELGLD 262

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D +YL  I   FGGGP GIE I+A + E    +ED+ EPY++Q GFI+RTPRGR++ P
Sbjct: 263 YVDHKYLRGIIERFGGGPCGIEAIAASIGEESQTLEDVYEPYLLQMGFIKRTPRGRVITP 322

Query: 322 IAWQHLGIDIP 332
            A  HLGI+ P
Sbjct: 323 QACHHLGIEYP 333


>gi|291545899|emb|CBL19007.1| Holliday junction DNA helicase, RuvB subunit [Ruminococcus sp.
           SR1/5]
          Length = 336

 Score =  357 bits (917), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 169/327 (51%), Positives = 242/327 (74%), Gaps = 1/327 (0%)

Query: 7   LLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           +++ +V++ED  +   LRP++L+E+ GQ +    LK++IEAAK R ++LDHVLF GPPGL
Sbjct: 5   IITTDVTEEDFSLEGNLRPQSLDEYIGQQKTKDTLKIYIEAAKQRHDSLDHVLFYGPPGL 64

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTL+ ++A E+G + + TSGP I K G++AA+L NL++ DVLF+DEIHRL+  VEE+L
Sbjct: 65  GKTTLSAIIANEMGTHMKVTSGPAIEKPGEMAAILNNLQEGDVLFVDEIHRLNRQVEEVL 124

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           YPAMEDF +D+M+G+G SARS++++L +FTL+ ATTR GLL+ PL+DRFG+  RL FY+ 
Sbjct: 125 YPAMEDFAIDIMIGKGASARSIRLDLPKFTLVGATTRAGLLSAPLRDRFGVTQRLEFYDK 184

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           ++L TI+ R A++ G+ +    A EIA RSRGTPR+A RLL+RVRDFA+V +   IT ++
Sbjct: 185 KELTTIILRSAQVLGVEIEPNGAAEIAKRSRGTPRLANRLLKRVRDFAQVKYNGVITYDV 244

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           A  AL  L +D+ G D+ D R L  +  NF GGPVG+ET++A + E    +ED+ EPY++
Sbjct: 245 ACFALDLLEVDQYGLDKTDRRILQTLILNFQGGPVGLETLAASIGEDSGTLEDVYEPYLL 304

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           Q GF+ RTPRGR+   +A+ HLG   P
Sbjct: 305 QTGFLNRTPRGRMASVLAYTHLGYPRP 331


>gi|289450847|ref|YP_003475226.1| Holliday junction DNA helicase RuvB [Clostridiales genomosp. BVAB3
           str. UPII9-5]
 gi|289185394|gb|ADC91819.1| Holliday junction DNA helicase RuvB [Clostridiales genomosp. BVAB3
           str. UPII9-5]
          Length = 372

 Score =  357 bits (917), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 179/319 (56%), Positives = 235/319 (73%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
            ED D   LRP    ++ GQ +  +NL+VFI+AA  R EALDHVL  GPPGLGKTTLA +
Sbjct: 48  NEDRDEPSLRPLVWSDYYGQDKVKANLQVFIQAALERNEALDHVLLYGPPGLGKTTLAGI 107

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +A E+  N R TSGP I KAGDLAA+LTNL+ RDVLFIDEIHRL+  VEEILYPAMED  
Sbjct: 108 IAGEMKSNLRITSGPAIEKAGDLAAILTNLQPRDVLFIDEIHRLNHSVEEILYPAMEDRV 167

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           LDLM+G+GPSARSV+++L+ FTL+ ATT+ G L+ PL+DRFG+  RL  Y+++DL  I++
Sbjct: 168 LDLMIGKGPSARSVRLDLAPFTLVGATTKAGNLSAPLRDRFGVINRLELYDVKDLAAILK 227

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A++  + +T+EA   +A RSRGTPRIA RLLRR+RDFA+VA   T+TR IA+  L  L
Sbjct: 228 RDAEIMHIGITEEAVTCLAERSRGTPRIAIRLLRRLRDFAQVASTSTVTRTIAENGLKAL 287

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            ID++G D+ D   L  I   + GGPVG++TI+A   E R+ IED+ EPY++Q GF+ +T
Sbjct: 288 CIDELGLDETDRNILIKIIDFYHGGPVGLDTIAAITGEDRNTIEDMYEPYLMQLGFLSKT 347

Query: 314 PRGRLLMPIAWQHLGIDIP 332
           PRGR+L P A++H+   +P
Sbjct: 348 PRGRVLTPAAFKHVNRPVP 366


>gi|148381021|ref|YP_001255562.1| Holliday junction DNA helicase RuvB [Clostridium botulinum A str.
           ATCC 3502]
 gi|153934214|ref|YP_001385392.1| Holliday junction DNA helicase RuvB [Clostridium botulinum A str.
           ATCC 19397]
 gi|153937310|ref|YP_001388799.1| Holliday junction DNA helicase RuvB [Clostridium botulinum A str.
           Hall]
 gi|166231483|sp|A7FY19|RUVB_CLOB1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|166231484|sp|A5I6F1|RUVB_CLOBH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|148290505|emb|CAL84633.1| holliday junction DNA helicase [Clostridium botulinum A str. ATCC
           3502]
 gi|152930258|gb|ABS35758.1| Holliday junction DNA helicase RuvB [Clostridium botulinum A str.
           ATCC 19397]
 gi|152933224|gb|ABS38723.1| Holliday junction DNA helicase RuvB [Clostridium botulinum A str.
           Hall]
          Length = 342

 Score =  357 bits (917), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 176/316 (55%), Positives = 232/316 (73%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           ++D +   LRP TL+E+ GQ +  +NL +FI+AAK R E+LDHVLF GPPGLGKTTLA +
Sbjct: 12  EDDREQYSLRPTTLKEYIGQKKVKANLDIFIKAAKKRNESLDHVLFYGPPGLGKTTLANI 71

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +A E+  N + TSGP I KAGDLAA+LT+L D DVLFIDEIHRL+  +EEILYPAMED+ 
Sbjct: 72  IANEMTGNLKVTSGPAIEKAGDLAAILTSLTDYDVLFIDEIHRLNRSIEEILYPAMEDYA 131

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           LD+++G+G +A+S++++L +FTLI ATTRVGLLT+PL+DRFG+   + FY  E+L  IV 
Sbjct: 132 LDIVIGKGAAAKSIRLDLPKFTLIGATTRVGLLTSPLRDRFGMLCAMEFYTDEELMEIVV 191

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A +  + +  EAA EI  RSRGTPRIA RLL+RVRD+ +V H   I  + A AAL  L
Sbjct: 192 RSAAILNVNICREAAFEIGKRSRGTPRIANRLLKRVRDYCDVKHDGDIDLQGAKAALDLL 251

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +DK G D++D + L  I  NF GGPVG+ET++  + E  D IED+ EPY+IQ+GFI RT
Sbjct: 252 EVDKEGLDKIDNKILEAIIFNFKGGPVGLETLAYFIGEELDTIEDVYEPYLIQKGFIMRT 311

Query: 314 PRGRLLMPIAWQHLGI 329
           PRGR+    A+ H G+
Sbjct: 312 PRGRVASEKAYNHFGV 327


>gi|160947140|ref|ZP_02094307.1| hypothetical protein PEPMIC_01072 [Parvimonas micra ATCC 33270]
 gi|158446274|gb|EDP23269.1| hypothetical protein PEPMIC_01072 [Parvimonas micra ATCC 33270]
          Length = 335

 Score =  357 bits (917), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 177/323 (54%), Positives = 231/323 (71%), Gaps = 1/323 (0%)

Query: 7   LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           ++    S+ED +I + LRP+ ++E+ GQ +A   LK+FIEAAK R E LDH L  GPPGL
Sbjct: 9   IIGTGFSREDIEIETSLRPKWIDEYIGQEKAKERLKIFIEAAKTRNEPLDHSLLYGPPGL 68

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLA ++A E+GVN R TSGP I K  DLA++LTNL   DVLFIDEIHR++  VEEIL
Sbjct: 69  GKTTLANIIANEMGVNIRVTSGPAIEKPSDLASILTNLSKDDVLFIDEIHRINRSVEEIL 128

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           YPAMED+ LD+++G+GPSARS++I+L +FTLI ATTR G LT PL+DRFGI + L  Y I
Sbjct: 129 YPAMEDYALDIIIGKGPSARSLRIDLEKFTLIGATTRTGQLTGPLRDRFGIMLSLELYSI 188

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           E+L+ I+ R A + G+ +  E A EIA RSRGTPRIA RLL+RVRDFA+V     I  + 
Sbjct: 189 ENLQKIITRSAGILGIEIEPEGALEIARRSRGTPRIANRLLKRVRDFAQVKRNGKIDLQT 248

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           +   L  L +D +G D +D + +T I  NF GGPVGI+TI+A   E R  IED+ EPY++
Sbjct: 249 SKDGLDILEVDSLGLDTIDRKIITTIIDNFSGGPVGIDTIAASTGEERITIEDVYEPYLL 308

Query: 306 QQGFIQRTPRGRLLMPIAWQHLG 328
           Q GF+ RT RGR++   A++H G
Sbjct: 309 QIGFLSRTSRGRIVTEKAYKHFG 331


>gi|56421126|ref|YP_148444.1| Holliday junction DNA helicase RuvB [Geobacillus kaustophilus
           HTA426]
 gi|81819658|sp|Q5KWR0|RUVB_GEOKA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|56380968|dbj|BAD76876.1| holliday junction DNA helicase [Geobacillus kaustophilus HTA426]
          Length = 333

 Score =  357 bits (917), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 175/323 (54%), Positives = 235/323 (72%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           + +E A    LRP+ L E+ GQ +   NLKVFIEAAK R E LDHVL  GPPGLGKTTLA
Sbjct: 11  LGEETALEPSLRPQYLHEYIGQDKIKENLKVFIEAAKLREETLDHVLLYGPPGLGKTTLA 70

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            ++A E+GV  R+TSGP + + GDLAALLT+LE  DVLFIDEIHRL   VEE+LYPAMED
Sbjct: 71  VIIANEMGVKLRATSGPALERPGDLAALLTSLEPGDVLFIDEIHRLPRAVEEVLYPAMED 130

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + LD+ +G+GP AR+++++L  FTL+ ATTR G L+ PL+DRFG+  RL +Y ++ L  I
Sbjct: 131 YCLDITIGKGPDARTLRLDLPPFTLVGATTRAGALSAPLRDRFGVISRLEYYHVDQLAQI 190

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           ++R A +  + +  EAA E+A R+RGTPRIA RLLRRVRDFA+V     IT  +A  AL 
Sbjct: 191 IERAAAILQIGIEREAALELARRARGTPRIANRLLRRVRDFAQVRGEGGITLPLAVEALE 250

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
           RL +D++G DQ+D + L+ +   F GGPVG+ET++A + E    IE++ EPY++Q G +Q
Sbjct: 251 RLQVDRLGLDQIDHKLLSAMIEKFAGGPVGLETLAAVIGEEAQTIEEVYEPYLMQIGLLQ 310

Query: 312 RTPRGRLLMPIAWQHLGIDIPHR 334
           RTPRGR++ P A+ HLG+++P R
Sbjct: 311 RTPRGRVVTPAAYTHLGMEVPKR 333


>gi|326791464|ref|YP_004309285.1| Holliday junction ATP-dependent DNA helicase ruvB [Clostridium
           lentocellum DSM 5427]
 gi|326542228|gb|ADZ84087.1| Holliday junction ATP-dependent DNA helicase ruvB [Clostridium
           lentocellum DSM 5427]
          Length = 331

 Score =  357 bits (916), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 171/320 (53%), Positives = 238/320 (74%), Gaps = 1/320 (0%)

Query: 7   LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           ++S ++  ED +I S +RP TL ++ GQ     N+K+FIEAAK R EALDHVL  GPPGL
Sbjct: 5   IMSSDLQLEDNEIESNIRPLTLSDYIGQTAIKENIKIFIEAAKQRGEALDHVLLYGPPGL 64

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTT+A V+A E+GV F+ TSGP I K GD+AA+L NL+  D+LFIDEIHR+S  VEE+L
Sbjct: 65  GKTTMAGVIASEMGVKFKVTSGPAIEKPGDIAAILNNLQHGDILFIDEIHRMSRHVEEVL 124

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           Y AMED+ +D++VG+GP+A+S+++ L +FTLI ATTR G+L++PL+DRFGI  RL +Y +
Sbjct: 125 YSAMEDYCIDIVVGKGPAAKSIRLTLPKFTLIGATTRAGMLSSPLRDRFGIIQRLEYYTM 184

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           ++L  I++R A +    +T+EAA E+A  SRGTPR+A RLL+RVRD A + +   I  E+
Sbjct: 185 QELGCILKRTAAILQTPITEEAALELAKCSRGTPRVANRLLKRVRDIALIKYDNHIDEEV 244

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
              AL  L+ID+ G D +D R +  IA  F GGPVG++T++A + E RD +ED+ EPY+I
Sbjct: 245 CTKALELLSIDRNGLDDIDRRIIQAIALQFKGGPVGLDTLAAAIGEERDTLEDVYEPYLI 304

Query: 306 QQGFIQRTPRGRLLMPIAWQ 325
           QQG++QRTPRGR+L P A++
Sbjct: 305 QQGYMQRTPRGRMLAPKAYE 324


>gi|261418394|ref|YP_003252076.1| Holliday junction DNA helicase RuvB [Geobacillus sp. Y412MC61]
 gi|319767647|ref|YP_004133148.1| Holliday junction DNA helicase RuvB [Geobacillus sp. Y412MC52]
 gi|261374851|gb|ACX77594.1| Holliday junction DNA helicase RuvB [Geobacillus sp. Y412MC61]
 gi|317112513|gb|ADU95005.1| Holliday junction DNA helicase RuvB [Geobacillus sp. Y412MC52]
          Length = 333

 Score =  357 bits (916), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 173/313 (55%), Positives = 231/313 (73%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E+ GQ +   NLKVFIEAAK R E LDHVL  GPPGLGKTTLA ++A E+GV 
Sbjct: 21  LRPQYLHEYIGQDKIKENLKVFIEAAKLREETLDHVLLYGPPGLGKTTLAVIIANEMGVK 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R+TSGP + + GDLAALLT+LE  DVLFIDEIHRL   VEE+LYPAMED+ LD+ +G+G
Sbjct: 81  LRATSGPALERPGDLAALLTSLEPGDVLFIDEIHRLPRAVEEVLYPAMEDYCLDIAIGKG 140

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P AR+++++L  FTL+ ATTR G L+ PL+DRFG+  RL +Y ++ L  I++R A +  +
Sbjct: 141 PDARTLRLDLPPFTLVGATTRAGALSAPLRDRFGVISRLEYYHVDQLAQIIERAAAILQI 200

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  EAA E+A R+RGTPRIA RLLRRVRDFA+V     IT  +A  AL RL +D++G D
Sbjct: 201 GIEREAALELARRARGTPRIANRLLRRVRDFAQVRGEGGITLPLAVEALERLQVDRLGLD 260

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           Q+D + L+ +   F GGPVG+ET++A + E    IE++ EPY++Q G +QRTPRGR++ P
Sbjct: 261 QIDHKLLSAMIEKFAGGPVGLETLAAVIGEEAQTIEEVYEPYLMQIGLLQRTPRGRVVTP 320

Query: 322 IAWQHLGIDIPHR 334
            A+ HLG+++P R
Sbjct: 321 AAYTHLGMEVPKR 333


>gi|238916874|ref|YP_002930391.1| Holliday junction DNA helicase RuvB [Eubacterium eligens ATCC
           27750]
 gi|238872234|gb|ACR71944.1| Holliday junction DNA helicase RuvB [Eubacterium eligens ATCC
           27750]
          Length = 337

 Score =  357 bits (916), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 171/323 (52%), Positives = 238/323 (73%), Gaps = 1/323 (0%)

Query: 7   LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           ++S  +++ED  I + LRP +L+++ GQ +  SNLKV+IEAAK R EALDHVLF GPPGL
Sbjct: 9   IISTQITEEDYGIENSLRPLSLDDYVGQNKVKSNLKVYIEAAKERGEALDHVLFYGPPGL 68

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLA ++A E+GVN + TSGP I K GD+AA+L NL + D+LF+DEIHRL+  VEE+L
Sbjct: 69  GKTTLAGIIANEMGVNIKVTSGPAIEKPGDMAAILNNLSEGDILFVDEIHRLNRQVEEVL 128

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           YPAMED+++D+M+G+G +ARS+++ L +FTLI ATTR GLL+ PL+DRFG+   + FY +
Sbjct: 129 YPAMEDYKIDIMIGKGATARSIRLELPQFTLIGATTRAGLLSAPLRDRFGVVSHMEFYTV 188

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
            +L+ I+ R A +  + +  + A E+A RSRGTPR+A RLL+RVRDFA+V +   I +++
Sbjct: 189 PELEKIIIRSANVLNVDIDSDGAHELARRSRGTPRLANRLLKRVRDFAQVKYNGHINKDV 248

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           AD AL  L +D+ G D+ D   LT I   F GGPVGIET++A + E    +ED+ EPY+I
Sbjct: 249 ADYALNLLDVDRDGLDRNDRVILTTIVDKFDGGPVGIETLAASIGEDSGTLEDVYEPYLI 308

Query: 306 QQGFIQRTPRGRLLMPIAWQHLG 328
           Q G+I RTPRGR+    A+ +LG
Sbjct: 309 QNGYINRTPRGRVATKAAYDNLG 331


>gi|302344654|ref|YP_003809183.1| Holliday junction DNA helicase RuvB [Desulfarculus baarsii DSM
           2075]
 gi|301641267|gb|ADK86589.1| Holliday junction DNA helicase RuvB [Desulfarculus baarsii DSM
           2075]
          Length = 340

 Score =  357 bits (916), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 180/323 (55%), Positives = 234/323 (72%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L+    ++ED  +  LRP +L EF GQ EA +NL+VFI AA+ R EALDHVL  G PGLG
Sbjct: 10  LVCGAAAEEDRALDSLRPTSLAEFVGQEEAKANLRVFIAAARQRGEALDHVLLHGHPGLG 69

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTTLA ++ARELGV   +TSGPV+ +AGDLAA+LTNL  RDVLF+DEIHRL+ +VEE+LY
Sbjct: 70  KTTLAHIIARELGVEVTATSGPVLERAGDLAAILTNLGPRDVLFVDEIHRLNHVVEEVLY 129

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           PAMEDF LD++VG+GPSAR+VK+NL  FTL+ ATTR GLLT PL+DRFG+ +R++ Y  E
Sbjct: 130 PAMEDFHLDIVVGQGPSARTVKLNLEPFTLVGATTRAGLLTPPLRDRFGVQVRVDMYTPE 189

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +L +IV R A+L GL ++ E A EIA RSR TPR+A RLL+RVRDFA+V  A      + 
Sbjct: 190 ELASIVGRSARLLGLDISPEGAAEIARRSRATPRVANRLLKRVRDFAQVEAAGHADLALC 249

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           D AL RL +D+ G D+LD   L+ I + F GGPVG+  ++A + E    IE++ EPY+IQ
Sbjct: 250 DYALGRLGVDQNGLDRLDRDLLSAIVQKFDGGPVGLSNLAAAVGEEAQTIEEVYEPYLIQ 309

Query: 307 QGFIQRTPRGRLLMPIAWQHLGI 329
           QG ++RT  GR+    A +  G 
Sbjct: 310 QGLLKRTKAGRVATGRALELFGF 332


>gi|220904536|ref|YP_002479848.1| Holliday junction DNA helicase RuvB [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219868835|gb|ACL49170.1| Holliday junction DNA helicase RuvB [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 327

 Score =  357 bits (916), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 171/306 (55%), Positives = 232/306 (75%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR+LE+F GQ +  +NL+V+++AA+ R +ALDH LF G PGLGKTTLAQ++A ELGVN
Sbjct: 17  VRPRSLEDFIGQDDLRANLRVYLDAARERGKALDHTLFYGNPGLGKTTLAQIMATELGVN 76

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
              TSGPV+ ++GDLAA+LTNL   D+LF+DEIHR+ I VEE+LYPAMEDF+LDL++G+G
Sbjct: 77  LVCTSGPVLERSGDLAAILTNLGSHDILFVDEIHRMPIAVEEVLYPAMEDFKLDLVIGQG 136

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+AR+VKI+L  FTL+ ATTR+GL+++PL+DRFGI  RL +Y   DL  +VQR A++ G+
Sbjct: 137 PAARTVKIDLEPFTLVGATTRMGLISSPLRDRFGIVARLEYYSSADLARVVQRTARILGV 196

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T + A EI  RSRGTPRIA RLLRRVRDFA V     +    A  AL R+ +D+ G D
Sbjct: 197 TITPDGAEEIGRRSRGTPRIANRLLRRVRDFALVHGNGQVNGHEASVALKRMDVDEHGLD 256

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           Q+D + L ++ +++ GGPVGI+T++   SE    IED+ EPY+IQ GF++RTPRGR+   
Sbjct: 257 QMDRKLLEVLIKHYDGGPVGIKTLAVACSEEVRTIEDIYEPYLIQCGFLKRTPRGRMATA 316

Query: 322 IAWQHL 327
            A+ HL
Sbjct: 317 RAYTHL 322


>gi|71065276|ref|YP_264003.1| Holliday junction DNA helicase RuvB [Psychrobacter arcticus 273-4]
 gi|97190239|sp|Q4FTT9|RUVB_PSYA2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|71038261|gb|AAZ18569.1| Holliday junction DNA helicase RuvB [Psychrobacter arcticus 273-4]
          Length = 331

 Score =  357 bits (916), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 185/312 (59%), Positives = 237/312 (75%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           DA  + +RP  L E+ GQ      ++VFI+AA+AR EALDH L  GPPGLGKTTLA ++A
Sbjct: 19  DAPDANIRPALLAEYIGQPVVREQMEVFIQAARARDEALDHTLIFGPPGLGKTTLANIIA 78

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           RE+G N RSTSGPV+ +AGDLAA+LTNLE  DVLFIDEIHRLS ++EEILYPAMEDFQLD
Sbjct: 79  REMGGNLRSTSGPVLERAGDLAAMLTNLEAGDVLFIDEIHRLSPVIEEILYPAMEDFQLD 138

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           +M+GEGP+ARS+K+ L  FTL+AATTR GLLT+PL+DRFGI  RL FY I DL TIV R 
Sbjct: 139 IMIGEGPAARSIKLELPPFTLVAATTRAGLLTSPLRDRFGIVQRLEFYNIADLTTIVSRA 198

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255
           A+L  + ++++ A EIA R+RGTPRIA RLLRRVRD+A+V    +I   IA +AL  LA+
Sbjct: 199 ARLMRVPMSEDGAVEIARRARGTPRIANRLLRRVRDYAQVRGDGSINGAIAGSALDMLAV 258

Query: 256 DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR 315
           D+ G D LD RY+ ++   F GGP G+E ++A ++E R  +ED+IEPY+IQQG++ RT R
Sbjct: 259 DRRGLDHLDRRYIEILHERFDGGPAGVEAVAAAMAEDRGTLEDVIEPYLIQQGYVLRTAR 318

Query: 316 GRLLMPIAWQHL 327
           GR+L  +A   +
Sbjct: 319 GRVLTQMAIDQM 330


>gi|257790729|ref|YP_003181335.1| Holliday junction DNA helicase RuvB [Eggerthella lenta DSM 2243]
 gi|257474626|gb|ACV54946.1| Holliday junction DNA helicase RuvB [Eggerthella lenta DSM 2243]
          Length = 351

 Score =  357 bits (916), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 171/312 (54%), Positives = 233/312 (74%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L ++ GQ +   +L + IEAA+AR + +DH+LF GPPGLGKTTLA VVA EL  N
Sbjct: 38  LRPKRLGDYLGQTKIKESLAILIEAAQARGDVVDHILFSGPPGLGKTTLAAVVANELDAN 97

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            ++TSGP I + GDLAA+LTNLE+ DVLFIDEIHRL+ +VEE+LYPA+EDF LD++VG+G
Sbjct: 98  LKTTSGPAIERTGDLAAILTNLEEGDVLFIDEIHRLNRMVEEVLYPALEDFALDIVVGKG 157

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS++++L RFTL+ ATTR GLLT PL+DRFGI  RL +Y  E+L +IV+R A +  +
Sbjct: 158 PAARSIRLDLPRFTLVGATTRTGLLTGPLRDRFGIAFRLQYYSPEELASIVRRSASILDV 217

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
           A+ ++ A EIA RSRGTPR+A RLL+RVRD+A+V     I  ++A  AL    +D +G D
Sbjct: 218 AIEEDGALEIARRSRGTPRLANRLLKRVRDWAQVRGDGVIDEDVAAQALSFFEVDALGLD 277

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D R L ++A  FGG PVG+ T+++ LSE  D +ED+ EPY++QQG + RTP+GR+   
Sbjct: 278 AVDNRILELLAVQFGGRPVGLTTLASALSEDTDTLEDVYEPYLMQQGLLVRTPKGRICTE 337

Query: 322 IAWQHLGIDIPH 333
            A+ HLGI +P 
Sbjct: 338 RAYDHLGIKVPS 349


>gi|299136384|ref|ZP_07029568.1| Holliday junction DNA helicase RuvB [Acidobacterium sp. MP5ACTX8]
 gi|298602508|gb|EFI58662.1| Holliday junction DNA helicase RuvB [Acidobacterium sp. MP5ACTX8]
          Length = 376

 Score =  357 bits (916), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 175/331 (52%), Positives = 244/331 (73%), Gaps = 1/331 (0%)

Query: 5   EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E L+S    ++D+   L LRP+ L EF GQ +A   L + +EAAK+R EALDHVL  GPP
Sbjct: 41  ERLVSAGQVEDDSAFELKLRPKWLAEFIGQEKAKEQLAIALEAAKSRGEALDHVLLFGPP 100

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++A ELGV ++ TSGP +   GDL A+LTNL +R VLF+DEIHRL  ++EE
Sbjct: 101 GLGKTTLATIIANELGVGYQQTSGPALQIQGDLTAILTNLRERQVLFLDEIHRLQPVLEE 160

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
            LY A+ED+Q+D+++G+GP+AR+  + +  FT +AATTR GLL++PL+ RFGI +RL FY
Sbjct: 161 KLYTALEDYQMDIIIGQGPAARTHTLEIKPFTFVAATTRPGLLSSPLRSRFGILLRLEFY 220

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
             ++L+ +V+R A++ G+ +  + A EIAMRSRGTPRIA RLLRRVRD+A+V  +  I R
Sbjct: 221 TDDELRFVVERSAEVLGVPIDRDGAAEIAMRSRGTPRIANRLLRRVRDYAQVRASGKIDR 280

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           E A AAL  L +D  GFD+LD R L  I   + GGPVG+ T++A L+E +DA+E++ EP+
Sbjct: 281 ETAMAALKMLEVDAHGFDELDRRLLRTIIEKYDGGPVGLNTLAAALAEEQDALEEVYEPF 340

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           +IQ GF+ RTPRGR+   +A++HLGI++P +
Sbjct: 341 LIQIGFLDRTPRGRVATRLAYEHLGIEMPRK 371


>gi|23099491|ref|NP_692957.1| Holliday junction DNA helicase B [Oceanobacillus iheyensis HTE831]
 gi|33301657|sp|Q8EPQ6|RUVB_OCEIH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|22777720|dbj|BAC13992.1| holliday junction DNA helicase [Oceanobacillus iheyensis HTE831]
          Length = 334

 Score =  357 bits (916), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 180/330 (54%), Positives = 238/330 (72%), Gaps = 3/330 (0%)

Query: 1   MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M DR  ++   +  +D +I L LRP TL ++ GQ +   NL +FI+AAK R E LDHVL 
Sbjct: 1   MDDR--MIDGELQDQDVEIELSLRPSTLSQYIGQDKVKENLTIFIQAAKMREEPLDHVLL 58

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +++ E+GV FRSTSGP I +AGDLAA+L++LE  DVLFIDE+HRL  
Sbjct: 59  YGPPGLGKTTLASIISYEMGVQFRSTSGPAIERAGDLAAILSSLEPGDVLFIDEVHRLPR 118

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEE+LY AMEDF +D+++G GPSARSV+I+L  FTL+ ATTR GLL+ PL+DRFG+  R
Sbjct: 119 SVEEVLYAAMEDFFIDIVIGTGPSARSVRIDLPPFTLVGATTRAGLLSAPLRDRFGVLSR 178

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +YEI+DL  IV+R A +  + ++ EAA E+A RSRGTPRIA RLL+RVRD ++V   +
Sbjct: 179 LEYYEIKDLCNIVERTADIFNMPISSEAAIEVARRSRGTPRIANRLLKRVRDISQVKGEE 238

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I+ E    AL  L +D  G D +D + LT I   F GGPVG++TI+A + E    IE++
Sbjct: 239 EISLESTKQALEMLQVDDAGLDHVDHKLLTGIIEGFSGGPVGLDTIAATIGEESQTIEEV 298

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
            EP+++Q GFIQRTPRGR++   A+ HLGI
Sbjct: 299 YEPFLLQLGFIQRTPRGRVITSKAYDHLGI 328


>gi|159898816|ref|YP_001545063.1| Holliday junction DNA helicase RuvB [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159891855|gb|ABX04935.1| Holliday junction DNA helicase RuvB [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 354

 Score =  357 bits (916), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 176/312 (56%), Positives = 226/312 (72%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E+ GQ +  +NLK+ I AAK R E LDH LF GPPGLGKTTL+ ++A E+GVN
Sbjct: 27  LRPKKLAEYIGQEKVLANLKIAIAAAKQRKEPLDHTLFYGPPGLGKTTLSTILANEMGVN 86

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGP I +AGDLAA+LTNL+  D+LFIDE+HRL+  VEE++YPAMEDF LD++VG+G
Sbjct: 87  IKITSGPAIERAGDLAAILTNLKKDDLLFIDEVHRLNRAVEEVMYPAMEDFALDIIVGKG 146

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSAR++++ L RFT++ ATTR+ LLT+PL+DRFG   RL FY +E +  IV+R A L   
Sbjct: 147 PSARNLRLKLPRFTVVGATTRLALLTSPLRDRFGSVHRLEFYSLEAMTDIVRRSAALLKS 206

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + D  A EIA R+RGTPR+  RLLRRVRDFA V     IT E+A AAL  L ID +G D
Sbjct: 207 PMDDAGALEIARRARGTPRVVNRLLRRVRDFALVMADNHITLEVAQAALASLEIDDLGLD 266

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           + D R L  +   F GGPVG+ T++A  +E  DAIED+ EPY++Q GFIQRTPRGR+   
Sbjct: 267 ENDRRVLRTLIETFNGGPVGLTTLAAATAEEVDAIEDVYEPYLLQLGFIQRTPRGRIATR 326

Query: 322 IAWQHLGIDIPH 333
            A+ HLG+  P 
Sbjct: 327 RAYDHLGLSFPE 338


>gi|323486644|ref|ZP_08091965.1| hypothetical protein HMPREF9474_03716 [Clostridium symbiosum
           WAL-14163]
 gi|323692210|ref|ZP_08106453.1| Holliday junction DNA helicase RuvB [Clostridium symbiosum
           WAL-14673]
 gi|323400025|gb|EGA92402.1| hypothetical protein HMPREF9474_03716 [Clostridium symbiosum
           WAL-14163]
 gi|323503784|gb|EGB19603.1| Holliday junction DNA helicase RuvB [Clostridium symbiosum
           WAL-14673]
          Length = 329

 Score =  357 bits (916), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 173/324 (53%), Positives = 239/324 (73%), Gaps = 1/324 (0%)

Query: 7   LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           +++  +++ED  I S LRP+ L+E+ GQ +  S LKVFI+AAK+R EALDHVLF GPPGL
Sbjct: 5   IITTEITEEDKRIESSLRPQYLDEYIGQEKIKSTLKVFIDAAKSRGEALDHVLFYGPPGL 64

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTL  ++A E+GV  + TSGP I K G++AA+L  L++ DVLF+DEIHRL+  VEE+L
Sbjct: 65  GKTTLCGIIANEMGVKMKVTSGPAIEKPGEIAAILNGLQEGDVLFVDEIHRLNRQVEEVL 124

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           YPAMED+ +D+M+G+  +ARS+++ L +FTL+ ATTR GLLT PL+DRFGI  +++FY  
Sbjct: 125 YPAMEDYAIDIMLGKDSTARSIRLELPKFTLVGATTRAGLLTAPLRDRFGIIQKMDFYMP 184

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           E+LKTI+ R A +  + + +  A EIA RSRGTPR+A RLL+RVRDFA+V +   IT+E+
Sbjct: 185 EELKTIILRSAGVMKVEIDERGAYEIARRSRGTPRLANRLLKRVRDFAQVKYEGVITKEV 244

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           AD AL  L +DK+G D  D   LT++   F GGPVG++T++A L E    +ED+ EPY++
Sbjct: 245 ADFALDILDVDKLGLDNNDRAILTIMIEKFSGGPVGLDTLAAALGEDSGTLEDVYEPYLL 304

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGI 329
             GFI RTPRGR+    A+ HLG+
Sbjct: 305 MNGFINRTPRGRVATEAAYHHLGL 328


>gi|266625273|ref|ZP_06118208.1| holliday junction DNA helicase RuvB [Clostridium hathewayi DSM
           13479]
 gi|288862828|gb|EFC95126.1| holliday junction DNA helicase RuvB [Clostridium hathewayi DSM
           13479]
          Length = 331

 Score =  357 bits (916), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 173/326 (53%), Positives = 239/326 (73%), Gaps = 1/326 (0%)

Query: 7   LLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           +++  V++ED      LRP++L E+ GQ +  +NLKV+I+AAKAR E+LDHVLF GPPGL
Sbjct: 5   IITTEVTEEDKRTEPNLRPQSLNEYIGQEKLKANLKVYIDAAKARGESLDHVLFYGPPGL 64

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTL+ ++A E+GVN + TSGP I K G++AA+L NL++ DVLF+DEIHRL+  VEE+L
Sbjct: 65  GKTTLSGIIANEMGVNMKVTSGPAIEKPGEMAAILNNLQEGDVLFVDEIHRLNRQVEEVL 124

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           YPAMED+ +D+M+G+  +ARS++++L RFTL+ ATTR GLLT PL+DRFG+  ++ FY  
Sbjct: 125 YPAMEDYAIDIMLGKDSAARSIRLDLPRFTLVGATTRAGLLTAPLRDRFGVVQKMEFYTP 184

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           ++L+ IV   AK+  + +  E A EIA RSRGTPR+A RLL+RVRDFA+V +   IT+E+
Sbjct: 185 KELEIIVCHSAKVLEVEIEPEGAAEIAKRSRGTPRLANRLLKRVRDFAQVKYHGVITKEV 244

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           AD AL  L +DK G D  D   LT +   F GGPVG+ET++A L E    +ED+ EPY++
Sbjct: 245 ADFALDILDVDKFGLDNNDRAILTTMIEKFSGGPVGLETLAASLGEDAGTLEDVYEPYLL 304

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDI 331
             GFI RTPRGR+    A+ HLG+ +
Sbjct: 305 MNGFINRTPRGRVATERAYHHLGLTL 330


>gi|298372128|ref|ZP_06982118.1| holliday junction DNA helicase RuvB [Bacteroidetes oral taxon 274
           str. F0058]
 gi|298275032|gb|EFI16583.1| holliday junction DNA helicase RuvB [Bacteroidetes oral taxon 274
           str. F0058]
          Length = 338

 Score =  357 bits (916), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 180/318 (56%), Positives = 230/318 (72%), Gaps = 1/318 (0%)

Query: 12  VSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           +++ DADI   LRP    +F GQ +   NL VF+EAAK RAE+LDHVL  GPPGLGKTTL
Sbjct: 9   ITKSDADIEKALRPLVFADFNGQGKIVENLSVFVEAAKMRAESLDHVLLHGPPGLGKTTL 68

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           + ++A ELGV  + TSGPV+ K GDLA LLT+LE  DVLFIDEIHRLS IVEE LY AME
Sbjct: 69  SAIIANELGVGLKMTSGPVLDKPGDLAGLLTSLEKNDVLFIDEIHRLSPIVEEYLYSAME 128

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           DF++D+M+ +GPSARS++I+L  FTL+ ATTR GLLT+PL+ RFGI     +Y+   L+ 
Sbjct: 129 DFRIDIMIDKGPSARSIQIDLEPFTLVGATTRSGLLTSPLRARFGINCHFEYYDESILRG 188

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           IV R AKL G+  + EAA EIA+RSRGTPR+A  LLRRVRDFA+V     I   I   +L
Sbjct: 189 IVLRSAKLLGVGCSQEAAGEIALRSRGTPRVANALLRRVRDFAQVRGNGDIDLTITKYSL 248

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
             L IDK G D++D + L  +   F GGPVG+ TI+  L E    IE++ EP++I++GFI
Sbjct: 249 EALNIDKYGLDEIDNKILLTVIDKFHGGPVGLNTIATALGEDAGTIEEVYEPFLIKEGFI 308

Query: 311 QRTPRGRLLMPIAWQHLG 328
           +RTPRGR +MP+A++HLG
Sbjct: 309 KRTPRGREVMPLAYEHLG 326


>gi|163848629|ref|YP_001636673.1| Holliday junction DNA helicase RuvB [Chloroflexus aurantiacus
           J-10-fl]
 gi|222526564|ref|YP_002571035.1| Holliday junction DNA helicase RuvB [Chloroflexus sp. Y-400-fl]
 gi|189046024|sp|A9WHF8|RUVB_CHLAA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|254767419|sp|B9LBR4|RUVB_CHLSY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|163669918|gb|ABY36284.1| Holliday junction DNA helicase RuvB [Chloroflexus aurantiacus
           J-10-fl]
 gi|222450443|gb|ACM54709.1| Holliday junction DNA helicase RuvB [Chloroflexus sp. Y-400-fl]
          Length = 350

 Score =  357 bits (915), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 181/334 (54%), Positives = 239/334 (71%), Gaps = 1/334 (0%)

Query: 2   MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M  E L++ +   +D  +   LRPRTL EF GQ +    L++ I AA+ R E+LDH LF 
Sbjct: 1   MSAERLVNPHSDSDDQQVEKSLRPRTLSEFIGQEKVVEQLRIAIAAARGRNESLDHTLFY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKT+LA VVA E+G   + TSGP I +AGDLAA+LTNL+  DVLFIDE+HRL+  
Sbjct: 61  GPPGLGKTSLANVVANEMGAKIKITSGPAIERAGDLAAILTNLQANDVLFIDEVHRLNRA 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDF LDL+VG+GP ARS+++NL RFT+I ATTR+ LLT+PL+DRF    RL
Sbjct: 121 VEEVLYPAMEDFALDLVVGKGPGARSLRLNLPRFTVIGATTRLALLTSPLRDRFVAVHRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  + +  IV R A++ G+ ++ E A EI  R+RGTPRIA R+LRRVRD+A+V     
Sbjct: 181 VFYSDDAMTEIVSRSARILGVPISPEGAREIGRRARGTPRIANRILRRVRDYAQVVADGA 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           IT ++A  AL +L ID++G D+ D R L  I   F GGPVG+ T++A L+E  DAIED+ 
Sbjct: 241 ITLQVARDALAQLEIDELGLDENDRRLLRAIIELFNGGPVGLSTLAAALAEEVDAIEDVY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           EP+++Q GF+QRTPRGR+    A++HLG+  P R
Sbjct: 301 EPFLLQLGFLQRTPRGRIATRRAYEHLGLPYPER 334


>gi|57234581|ref|YP_181348.1| Holliday junction DNA helicase B [Dehalococcoides ethenogenes 195]
 gi|97190018|sp|Q3Z8V1|RUVB_DEHE1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|57225029|gb|AAW40086.1| Holliday junction DNA helicase RuvB [Dehalococcoides ethenogenes
           195]
          Length = 349

 Score =  357 bits (915), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 179/331 (54%), Positives = 237/331 (71%), Gaps = 1/331 (0%)

Query: 3   DREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           ++E L+S  ++ +DA + + LRPR L +F GQ     NL V I+AAK R EALDHVL  G
Sbjct: 4   EKERLISGKLAADDAKLDTSLRPRCLSDFIGQKRLKDNLGVAIQAAKQRGEALDHVLLYG 63

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTL+ ++A E+GVN R TSGP I + GDLAA+LTNL+  D+LFIDEIHRLS  V
Sbjct: 64  PPGLGKTTLSHIIALEMGVNIRITSGPAIERQGDLAAILTNLKPFDILFIDEIHRLSRNV 123

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMED+ LD+MVG+GP ARS+++ L  FTLI ATTR  +L+ PL+DRFG   RL+
Sbjct: 124 EEVLYPAMEDYALDIMVGKGPGARSLRLKLPHFTLIGATTRYAMLSAPLRDRFGSIFRLD 183

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY+ + +  IV R A + G+   +    +IA RSRGTPR+A RLLRRVRD+A+V     I
Sbjct: 184 FYDEDAIHDIVSRSAHILGVEAEENGIRQIACRSRGTPRVANRLLRRVRDYAQVKGNGLI 243

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T ++A  +L  L +D++G D++D + L  I   FGGGPVG+ETI+A +SE  D I D+ E
Sbjct: 244 TGDMAAESLACLEVDRLGLDEIDHKVLKTIIHKFGGGPVGLETIAAAISEEADTIMDVYE 303

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           PY++Q GF++RTPRGR    +A+QHL I  P
Sbjct: 304 PYLLQLGFLERTPRGRQATRLAYQHLNIPYP 334


>gi|310822968|ref|YP_003955326.1| holliday junction ATP-dependent DNA helicase ruvb [Stigmatella
           aurantiaca DW4/3-1]
 gi|309396040|gb|ADO73499.1| Holliday junction ATP-dependent DNA helicase RuvB [Stigmatella
           aurantiaca DW4/3-1]
          Length = 359

 Score =  357 bits (915), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 174/306 (56%), Positives = 226/306 (73%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPRT EE+ GQ      LKV++ AA  R +ALDH LF GPPGLGKT+LA ++A ELGV 
Sbjct: 40  LRPRTFEEYVGQDAVVEKLKVYVRAAGQRRDALDHCLFSGPPGLGKTSLAHIIASELGVG 99

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
              TSGP + + GDLA LLTNL +RDVLFIDEIHRL+  VEE LYPAMEDF+LD+ +  G
Sbjct: 100 IHVTSGPALERKGDLAGLLTNLNERDVLFIDEIHRLNAAVEEYLYPAMEDFRLDITIDTG 159

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+AR++KI+L  FTLI ATTR GLLT+PL+DRF I  RL++YE + L+ I+ R A++ G+
Sbjct: 160 PAARAMKIDLPPFTLIGATTRTGLLTSPLRDRFQIQERLDYYEPKYLEMILNRSARILGV 219

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  +A+ EI+ RSRGTPRI+ RLLRR+RDFA+V     ITRE+A  +L RL +D  G D
Sbjct: 220 PLERDASKEISTRSRGTPRISNRLLRRLRDFAQVEGEGHITRELARVSLDRLGVDASGLD 279

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  I   FGGGPVG+ETI+A + E RD+IED+ EPY++Q+GF+QRTPRGR+   
Sbjct: 280 SMDRKILLTIIDKFGGGPVGVETIAASVGEQRDSIEDVYEPYLLQEGFLQRTPRGRMATH 339

Query: 322 IAWQHL 327
            A+ + 
Sbjct: 340 RAYGYF 345


>gi|205374299|ref|ZP_03227098.1| Holliday junction DNA helicase B [Bacillus coahuilensis m4-4]
          Length = 332

 Score =  356 bits (914), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 175/311 (56%), Positives = 228/311 (73%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L ++ GQ +   NL++FIEAAK R E LDHVL  GPPGLGKTTLA V+A E+GVN
Sbjct: 21  LRPQFLRQYIGQDKVKHNLQIFIEAAKLREECLDHVLLYGPPGLGKTTLAAVIANEMGVN 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R+TSGP I + GDLAA+LT LE  DVLFIDEIHRL   +EE+LYPAMEDF LD+++G+G
Sbjct: 81  LRTTSGPAIERPGDLAAILTALEPGDVLFIDEIHRLPRSIEEVLYPAMEDFCLDIVIGKG 140

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSARSV+++L  FTL+ ATTR G ++ PL+DRFG+  RL +Y  E LK IV R A++   
Sbjct: 141 PSARSVRLDLPPFTLVGATTRAGAISAPLRDRFGVLCRLEYYTEEQLKDIVVRTAEILDT 200

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
           ++T   A E+A RSRGTPRIA RLLRRVRDFA+V     IT E+A  AL  L +DK G D
Sbjct: 201 SITSTGAIEMARRSRGTPRIANRLLRRVRDFAQVKGDGEITSELASQALELLQVDKKGLD 260

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + +  I   F GGPVG++T++A + E  D IED+ EPY++Q GF+QRTPRGR++  
Sbjct: 261 HIDHKLILSIMDRFKGGPVGLDTMAASIGEESDTIEDVYEPYLLQIGFLQRTPRGRMVTN 320

Query: 322 IAWQHLGIDIP 332
           +A++H   ++P
Sbjct: 321 LAYEHFDREVP 331


>gi|160879482|ref|YP_001558450.1| Holliday junction DNA helicase B [Clostridium phytofermentans ISDg]
 gi|189046027|sp|A9KP49|RUVB_CLOPH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|160428148|gb|ABX41711.1| Holliday junction DNA helicase RuvB [Clostridium phytofermentans
           ISDg]
          Length = 336

 Score =  356 bits (914), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 170/324 (52%), Positives = 239/324 (73%), Gaps = 1/324 (0%)

Query: 7   LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           +++  + +ED  + + LRP+ LE++ GQ +A  NLKV+IEAAK R E+LDHVLF GPPGL
Sbjct: 5   MITTELMEEDVKLETSLRPQMLEDYIGQKKAKENLKVYIEAAKQRKESLDHVLFFGPPGL 64

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLA ++A E+GVN ++T+GP I K GD+AA+L NL++ DVLFIDEIHRL+  VEE+L
Sbjct: 65  GKTTLAGIIANEMGVNLKTTAGPAIEKPGDMAAILNNLQEGDVLFIDEIHRLNRQVEELL 124

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           YPAMED+ +D+++G+G +A+S++++L RFTL+ ATTR G+LT PL+DRFG+  RL FY  
Sbjct: 125 YPAMEDYVIDIVIGKGATAKSIRLDLPRFTLVGATTRAGMLTAPLRDRFGVVHRLEFYTT 184

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           E+LK I+ R AK+  + + D  A E+A RSRGTPR+A RLL+RVRDFA+V +   IT E+
Sbjct: 185 EELKEIITRSAKVLQVEIDDCGATELARRSRGTPRLANRLLKRVRDFAQVKYDGRITEEV 244

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           A  AL  L +DK+G D +D + L  +   F GGPVGI+ I+  + E    +E++ EPY++
Sbjct: 245 ARFALDILEVDKLGLDHIDRQILVTMIEKFAGGPVGIDAIATTIGEDSGTVEEVYEPYLV 304

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGI 329
           Q G I RTPRGR++   A+ H G+
Sbjct: 305 QNGLILRTPRGRVVTQEAYLHCGL 328


>gi|255281766|ref|ZP_05346321.1| holliday junction DNA helicase RuvB [Bryantella formatexigens DSM
           14469]
 gi|255267833|gb|EET61038.1| holliday junction DNA helicase RuvB [Bryantella formatexigens DSM
           14469]
          Length = 337

 Score =  356 bits (914), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 172/329 (52%), Positives = 237/329 (72%), Gaps = 1/329 (0%)

Query: 7   LLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           ++   V +EDA I   LRP+TL+E+ GQ +A  NLK++IEAAK R ++LDHVLF GPPGL
Sbjct: 5   IIETEVMEEDARIEPSLRPKTLDEYIGQEKAKQNLKIYIEAAKQRGDSLDHVLFYGPPGL 64

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLA ++A E+GVN + TSGP I K G++AA+L NL++ DVLF+DEIHRL+  VEE+L
Sbjct: 65  GKTTLAGIIANEMGVNMKVTSGPAIEKPGEMAAILNNLQEGDVLFVDEIHRLNRQVEEVL 124

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           YPAMED+ +D+M+G+G +ARS+++ L RFTL+ ATTR GLLT PL+DRFG+   L +Y +
Sbjct: 125 YPAMEDYAIDIMIGKGATARSIRLELPRFTLVGATTRAGLLTAPLRDRFGVIHHLEYYTV 184

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           E+L TI+   AK  G+ +    A E+A RSRGTPR+A RLL+RVRDFA+V +   IT++I
Sbjct: 185 EELSTIICHSAKALGVEIDAGGAEELAKRSRGTPRLANRLLKRVRDFAQVKYDGNITKDI 244

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           A  AL  L +D+ G D  D   L  +   F GGPVG++T++A + E    IED+ EPY++
Sbjct: 245 ACFALDLLEVDRYGLDVTDRNLLLTLIEKFSGGPVGLDTLAATIGEDAGTIEDVYEPYLL 304

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           + GFI RTPRGR+    A+ HL + +  +
Sbjct: 305 KNGFINRTPRGRVATEKAYHHLNLQLQEK 333


>gi|219847790|ref|YP_002462223.1| Holliday junction DNA helicase RuvB [Chloroflexus aggregans DSM
           9485]
 gi|254767418|sp|B8G5S6|RUVB_CHLAD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|219542049|gb|ACL23787.1| Holliday junction DNA helicase RuvB [Chloroflexus aggregans DSM
           9485]
          Length = 350

 Score =  356 bits (914), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 182/334 (54%), Positives = 237/334 (70%), Gaps = 1/334 (0%)

Query: 2   MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M  E L++ +   +D  +   LRPRTL EF GQ +    L++ I AA+ R EALDH LF 
Sbjct: 1   MSAERLVNPHSDSDDQQVEKSLRPRTLSEFIGQEKVVEQLRIAIAAARGRNEALDHTLFY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKT+LA VVA E+G   + TSGP I +AGDLAA+LTNL+  DVLFIDE+HRL+  
Sbjct: 61  GPPGLGKTSLANVVANEMGAKIKITSGPAIERAGDLAAILTNLQPNDVLFIDEVHRLNRA 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDF LDL+VG+GP ARS+++NL RFT+I ATTR+ LLT+PL+DRF    RL
Sbjct: 121 VEEVLYPAMEDFALDLVVGKGPGARSLRLNLPRFTVIGATTRLALLTSPLRDRFVAVHRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY    +  IV R A++ G+ ++ E A EI  R+RGTPRIA R+LRRVRD+A+V     
Sbjct: 181 VFYSDAAMTEIVSRSARILGVPISPEGAREIGRRARGTPRIANRILRRVRDYAQVVANGE 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           IT  +A  AL +L ID++G D+ D R L  I   F GGPVG+ T++A L+E  DAIED+ 
Sbjct: 241 ITLAVAREALAQLEIDELGLDENDRRLLRAIIELFNGGPVGLNTLAAALAEEVDAIEDVY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           EP+++Q GF+QRTPRGR+    A++HLG+  P R
Sbjct: 301 EPFLLQLGFLQRTPRGRVATRRAYEHLGLPFPER 334


>gi|304440232|ref|ZP_07400122.1| crossover junction ATP-dependent DNA helicase RuvB [Peptoniphilus
           duerdenii ATCC BAA-1640]
 gi|304371281|gb|EFM24897.1| crossover junction ATP-dependent DNA helicase RuvB [Peptoniphilus
           duerdenii ATCC BAA-1640]
          Length = 338

 Score =  356 bits (914), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 182/330 (55%), Positives = 237/330 (71%), Gaps = 3/330 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M DR  L+  N S  ED   S +RP+ + E+ GQ +A   LK+FIEAAK R E+LDHVL 
Sbjct: 1   MEDR--LVEPNFSPSEDILESGIRPKWISEYIGQDKAKEKLKIFIEAAKNRNESLDHVLL 58

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A E+GVN + TSGP I + GDLA++LTNL++ DVLFIDEIHR++ 
Sbjct: 59  NGPPGLGKTTLAGIIANEMGVNIKVTSGPAIERPGDLASILTNLQEDDVLFIDEIHRINK 118

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEEILY AMEDF LD++VG+GPSARS++++LS+FTLI ATTR G LTNPL+DRFG+ + 
Sbjct: 119 SVEEILYSAMEDFALDIIVGKGPSARSIRLDLSKFTLIGATTRAGSLTNPLRDRFGVILN 178

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L  Y+ E L+ I+ R +K+  + +    A  IA RSRGTPRIA RLL+RVRD+AEV    
Sbjct: 179 LELYDNEALENIILRSSKILNIPIEKNGAKMIAKRSRGTPRIANRLLKRVRDYAEVKENG 238

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT ++A+  L  L ID+ G D LD R + ++  N+GG PVGI+ I+A + E R  IED 
Sbjct: 239 IITEDVANRGLDLLEIDEYGLDSLDRRIIEVMIINYGGRPVGIDAIAASVGEERVTIEDA 298

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
            EPY++Q GFI RTPRGR+   +A+ HL I
Sbjct: 299 YEPYLLQIGFINRTPRGRMPTKLAYDHLNI 328


>gi|332799128|ref|YP_004460627.1| Holliday junction ATP-dependent DNA helicase ruvB
           [Tepidanaerobacter sp. Re1]
 gi|332696863|gb|AEE91320.1| Holliday junction ATP-dependent DNA helicase ruvB
           [Tepidanaerobacter sp. Re1]
          Length = 332

 Score =  356 bits (914), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 179/306 (58%), Positives = 227/306 (74%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP +  E+ GQ     NL+VFI+AA  R EALDHVL  GPPGLGKTTLA ++ARELGVN
Sbjct: 22  IRPLSFNEYVGQDRVKENLQVFIKAALMRREALDHVLLFGPPGLGKTTLAYIIARELGVN 81

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGP I +AGDLAA+LTNL +RD+LFIDEIHRL   VEEILYPAMEDF LD+MVG+G
Sbjct: 82  IRITSGPAIERAGDLAAILTNLGNRDLLFIDEIHRLHPSVEEILYPAMEDFALDIMVGKG 141

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSARS+++NLS FTL+ ATT+ G LT+PL+DRFG+ + L+FY+I DL TI++R A L  +
Sbjct: 142 PSARSMRLNLSPFTLVGATTKAGRLTSPLRDRFGMSLHLDFYKISDLVTIIKRSAALLKV 201

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  +AA  IA+ SRGTPR+A RLL+R+RDFA+V     IT +I +  L  L ID  G D
Sbjct: 202 DIEQKAAERIALCSRGTPRLANRLLKRIRDFAQVRGDGVITMDITEEGLRLLEIDSHGLD 261

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           Q D R L  +   F GGPVGIE+I+A L+E    IED+ EPY+IQ+G++ RT RGR++  
Sbjct: 262 QNDRRLLLTVIDKFDGGPVGIESIAAALNEDVSTIEDIYEPYLIQEGYMFRTARGRIVSD 321

Query: 322 IAWQHL 327
            A+ HL
Sbjct: 322 KAYDHL 327


>gi|331091225|ref|ZP_08340066.1| Holliday junction ATP-dependent DNA helicase ruvB [Lachnospiraceae
           bacterium 2_1_46FAA]
 gi|330404672|gb|EGG84211.1| Holliday junction ATP-dependent DNA helicase ruvB [Lachnospiraceae
           bacterium 2_1_46FAA]
          Length = 333

 Score =  356 bits (913), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 170/317 (53%), Positives = 236/317 (74%), Gaps = 1/317 (0%)

Query: 14  QEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           +ED  I + LRP+ L ++ GQ +A   L+++I+AAK R EALDHVLF GPPGLGKTTLA 
Sbjct: 12  EEDLKIENHLRPQLLTDYIGQEKAKEMLRIYIQAAKERNEALDHVLFYGPPGLGKTTLAG 71

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++A E+GVN + TSGP I K G++AA+L NL++ DVLF+DEIHRL+  VEEILYPAMED+
Sbjct: 72  IIANEMGVNLKITSGPAIEKPGEMAAILNNLQEGDVLFVDEIHRLNRQVEEILYPAMEDY 131

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            +D+M+G+G +ARS++++L +FTL+ ATTR G+LT PL+DRFG+  RL FY  ++L+TI+
Sbjct: 132 AIDIMIGKGANARSIRLDLPQFTLVGATTRAGMLTAPLRDRFGVVQRLEFYTEKELQTII 191

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R A + G+ V +  A E+A RSRGTPR+A RLL+RVRDFA++ +   IT E A+ AL  
Sbjct: 192 IRSAGVMGVEVDENGAMEMARRSRGTPRLANRLLKRVRDFAQIKYDGIITEEAANYALDL 251

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +DK G D +D   L  + + F GGPVG++T++A + E    IED+ EPY+I+ GF+ R
Sbjct: 252 LEVDKYGLDHIDRNILLTMIQKFNGGPVGLDTLAASIGEDSGTIEDVYEPYLIKNGFLHR 311

Query: 313 TPRGRLLMPIAWQHLGI 329
           TPRGR++   A+ HLGI
Sbjct: 312 TPRGRVVTSFAYHHLGI 328


>gi|89889466|ref|ZP_01200977.1| holliday junction specific DNA helicase, subunit ruvB
           [Flavobacteria bacterium BBFL7]
 gi|89517739|gb|EAS20395.1| holliday junction specific DNA helicase, subunit ruvB
           [Flavobacteria bacterium BBFL7]
          Length = 342

 Score =  356 bits (913), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 179/319 (56%), Positives = 232/319 (72%), Gaps = 1/319 (0%)

Query: 11  NVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           + S E+ D+   LRP + ++F GQ +   NLK+F+EAA  R +ALDH LF GPPGLGKTT
Sbjct: 11  HFSHEENDMERALRPLSFDDFAGQDQVLENLKIFVEAANQRDDALDHALFHGPPGLGKTT 70

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           LA ++A ELGV  + TSGPV+ K GDLA LLTNL++RDVLFIDEIHRLS IVEE LY AM
Sbjct: 71  LAHILANELGVGIKVTSGPVLDKPGDLAGLLTNLDERDVLFIDEIHRLSPIVEEYLYSAM 130

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           ED+++D+M+  GP+AR+V+INL+ FTLI ATTR GLLT P++ RFGI  RL +Y  E L 
Sbjct: 131 EDYKIDIMIETGPNARTVQINLAPFTLIGATTRSGLLTAPMRARFGIQSRLQYYSTELLS 190

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
           TIV R A +  + + ++AA EIA RSRGTPRIA  LLRRVRDFA++    +I  +IA  +
Sbjct: 191 TIVTRSADILKVPIDEDAAIEIAGRSRGTPRIANALLRRVRDFAQIKGNGSIDLKIAKYS 250

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           L  L +D  G D++D + L  I   F GGPVG+ TI+  +SE  + IE++ EP++IQQGF
Sbjct: 251 LKALNVDVNGLDEMDNKILLTIIDKFKGGPVGLTTIATAVSESAETIEEVYEPFLIQQGF 310

Query: 310 IQRTPRGRLLMPIAWQHLG 328
           I RTPRGR +  +A+QHLG
Sbjct: 311 IMRTPRGREVTELAYQHLG 329


>gi|268318193|ref|YP_003291912.1| Holliday junction DNA helicase RuvB [Rhodothermus marinus DSM 4252]
 gi|262335727|gb|ACY49524.1| Holliday junction DNA helicase RuvB [Rhodothermus marinus DSM 4252]
          Length = 340

 Score =  356 bits (913), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 179/322 (55%), Positives = 231/322 (71%), Gaps = 1/322 (0%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           ++ED + +L RPR LEEF GQ +   NL+VFI AA  R E LDHVL  GPPGLGKTTLA 
Sbjct: 14  AEEDYEKAL-RPRRLEEFIGQPKIKDNLRVFITAALQRGETLDHVLLSGPPGLGKTTLAY 72

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++A E+G   R+TSGPV+ K  D+A LLTNL + DVLFIDEIHRLS +VEE LY AMED+
Sbjct: 73  IIAEEMGARIRTTSGPVLEKPADIAGLLTNLNEGDVLFIDEIHRLSPVVEEYLYSAMEDY 132

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           ++D+++  GP+ARSVK+ L  FTLI ATTR GLLT PL+ RFGI  R ++Y  EDL+ IV
Sbjct: 133 RIDILIDSGPNARSVKLRLPPFTLIGATTRKGLLTAPLRARFGIEFRYDYYRTEDLQQIV 192

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R A++ G+ + +E A EIA RSRGTPRIA RLLRR RDFAEV     ITRE+A  AL  
Sbjct: 193 LRSARILGVEIDEEGAYEIARRSRGTPRIANRLLRRTRDFAEVKGDGRITREVARMALEA 252

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D+ G D++D+R L  +   FGGGP G+ T++  + E    +E++ EPY+IQ+GF++R
Sbjct: 253 LDVDEAGLDEMDVRLLRTLIEKFGGGPTGLNTLAVAVGEDPGTLEEVYEPYLIQEGFLER 312

Query: 313 TPRGRLLMPIAWQHLGIDIPHR 334
           TPRGR+    A+QH G+  P R
Sbjct: 313 TPRGRVATIRAYQHFGLTPPAR 334


>gi|182418590|ref|ZP_02949870.1| holliday junction DNA helicase RuvB [Clostridium butyricum 5521]
 gi|237668079|ref|ZP_04528063.1| Holliday junction DNA helicase RuvB [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|182377593|gb|EDT75144.1| holliday junction DNA helicase RuvB [Clostridium butyricum 5521]
 gi|237656427|gb|EEP53983.1| Holliday junction DNA helicase RuvB [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 347

 Score =  356 bits (913), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 177/321 (55%), Positives = 237/321 (73%), Gaps = 3/321 (0%)

Query: 11  NVSQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           N S+ ++D +    LRP+ + E+ GQ +    L +FI+AAK R EALDHVL  GPPGLGK
Sbjct: 6   NPSELNSDFNSELSLRPQKINEYIGQEKVKERLDIFIKAAKNRNEALDHVLLYGPPGLGK 65

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127
           TTLA ++A+E+  + + TSGP I +AGDLAA+LT L+D DVLFIDEIHRL+  VEEILYP
Sbjct: 66  TTLANIIAKEMTGDLKVTSGPAIERAGDLAAILTTLKDYDVLFIDEIHRLNRSVEEILYP 125

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           AMED+ LD+++G+G SA+S++I+L +FTLI ATTRVG+LT PL+DRFG+   + +Y  ++
Sbjct: 126 AMEDYVLDIVIGKGASAKSIRIDLPKFTLIGATTRVGMLTAPLRDRFGVLCAMEYYTNDE 185

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           LK I+ R A + G ++T+E A EIA RSRGTPRIA RLL+RVRD++EV   K I+ + A 
Sbjct: 186 LKEIIVRSASVFGCSITEEGAIEIARRSRGTPRIANRLLKRVRDYSEVKSNKIISLKEAR 245

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
            AL  L +D +GFD++D + L  I  NF GGPVGIET+S  + E    IED+ EPY++QQ
Sbjct: 246 EALQLLEVDNLGFDRVDNKILEAIIDNFKGGPVGIETLSYFIGEELGTIEDVYEPYLLQQ 305

Query: 308 GFIQRTPRGRLLMPIAWQHLG 328
           GFI RTPRGR+    A++HLG
Sbjct: 306 GFIIRTPRGRIASDKAYEHLG 326


>gi|115379905|ref|ZP_01466964.1| holliday junction DNA helicase RuvB [Stigmatella aurantiaca
           DW4/3-1]
 gi|115363081|gb|EAU62257.1| holliday junction DNA helicase RuvB [Stigmatella aurantiaca
           DW4/3-1]
          Length = 344

 Score =  356 bits (913), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 174/306 (56%), Positives = 226/306 (73%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPRT EE+ GQ      LKV++ AA  R +ALDH LF GPPGLGKT+LA ++A ELGV 
Sbjct: 25  LRPRTFEEYVGQDAVVEKLKVYVRAAGQRRDALDHCLFSGPPGLGKTSLAHIIASELGVG 84

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
              TSGP + + GDLA LLTNL +RDVLFIDEIHRL+  VEE LYPAMEDF+LD+ +  G
Sbjct: 85  IHVTSGPALERKGDLAGLLTNLNERDVLFIDEIHRLNAAVEEYLYPAMEDFRLDITIDTG 144

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+AR++KI+L  FTLI ATTR GLLT+PL+DRF I  RL++YE + L+ I+ R A++ G+
Sbjct: 145 PAARAMKIDLPPFTLIGATTRTGLLTSPLRDRFQIQERLDYYEPKYLEMILNRSARILGV 204

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  +A+ EI+ RSRGTPRI+ RLLRR+RDFA+V     ITRE+A  +L RL +D  G D
Sbjct: 205 PLERDASKEISTRSRGTPRISNRLLRRLRDFAQVEGEGHITRELARVSLDRLGVDASGLD 264

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  I   FGGGPVG+ETI+A + E RD+IED+ EPY++Q+GF+QRTPRGR+   
Sbjct: 265 SMDRKILLTIIDKFGGGPVGVETIAASVGEQRDSIEDVYEPYLLQEGFLQRTPRGRMATH 324

Query: 322 IAWQHL 327
            A+ + 
Sbjct: 325 RAYGYF 330


>gi|149183131|ref|ZP_01861581.1| Holliday junction DNA helicase B [Bacillus sp. SG-1]
 gi|148849163|gb|EDL63363.1| Holliday junction DNA helicase B [Bacillus sp. SG-1]
          Length = 333

 Score =  356 bits (913), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 177/330 (53%), Positives = 236/330 (71%), Gaps = 1/330 (0%)

Query: 5   EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E ++S      D    L LRP+TL ++ GQ +  SNL +FIEAA+ R E LDHVL  GPP
Sbjct: 3   ERVVSSEAETSDHSFELSLRPQTLNQYIGQDKVKSNLGIFIEAARMRQETLDHVLLYGPP 62

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA V+A E+GVN R+TSGP I + GDLAA+LT+LE  DVLFIDEIHRL   +EE
Sbjct: 63  GLGKTTLAAVIANEMGVNLRTTSGPAIERPGDLAAILTSLEPGDVLFIDEIHRLPRSIEE 122

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LYPAMEDF LD+++G GPSARSV+++L  FTL+ ATTR G L+ PL+DRFG+  RL +Y
Sbjct: 123 VLYPAMEDFCLDIVIGNGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLCRLEYY 182

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
             + L+ IV R +++ G  +   A+ E+A RSRGTPRIA RLLRRVRDFA+V     IT 
Sbjct: 183 NEDQLREIVIRTSEILGTEIDGLASVELARRSRGTPRIANRLLRRVRDFAQVRGNGEITS 242

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           ++A  AL  L +DK+G D +D + L  I   F GGPVG++TI+A + E    IED+ EPY
Sbjct: 243 DLASHALELLQVDKLGLDHIDHKLLRGIIERFKGGPVGLDTIAASIGEESHTIEDVYEPY 302

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           ++Q GF+QRTPRGR++  + ++H  +++P+
Sbjct: 303 LLQIGFLQRTPRGRVVTSLVYEHFDLEVPN 332


>gi|319953595|ref|YP_004164862.1| holliday junction ATP-dependent DNA helicase ruvb [Cellulophaga
           algicola DSM 14237]
 gi|319422255|gb|ADV49364.1| Holliday junction ATP-dependent DNA helicase ruvB [Cellulophaga
           algicola DSM 14237]
          Length = 340

 Score =  356 bits (913), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 180/321 (56%), Positives = 232/321 (72%), Gaps = 1/321 (0%)

Query: 9   SRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           + N + E+ D    LRP +  +FTGQ +   NLKVF+EAA  R EALDH LF GPPGLGK
Sbjct: 9   NENFTPEEVDFDKALRPISFSDFTGQEQILENLKVFVEAANLRGEALDHTLFHGPPGLGK 68

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127
           TTLA ++A ELGV  + TSGPV+ K GDLA LLTNL++RDVLFIDEIHRLS IVEE LY 
Sbjct: 69  TTLAHILANELGVGIKITSGPVLDKPGDLAGLLTNLDERDVLFIDEIHRLSPIVEEYLYS 128

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           AMED+++D+M+  GP+ARSV+INL+ FTLI ATTR GLLT+P++ RFGI  RL +Y  E 
Sbjct: 129 AMEDYKIDIMIETGPNARSVQINLNPFTLIGATTRSGLLTSPMRARFGIQSRLQYYSSEL 188

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           L TIV R +++  + +T +AA EIA RSRGTPRI   LLRRVRDFA++     I  EI+ 
Sbjct: 189 LATIVTRSSEILKMPITADAAIEIAGRSRGTPRICNALLRRVRDFAQIKGNGKIDLEISR 248

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
            AL  L +D  G D++D + L  +   F GGPVGI T++  +SE  + IE++ EP++IQ+
Sbjct: 249 FALKALNVDAHGLDEMDNKILLTLIDKFKGGPVGITTLATAVSESAETIEEVYEPFLIQE 308

Query: 308 GFIQRTPRGRLLMPIAWQHLG 328
           GFI RTPRGR +  +A++HLG
Sbjct: 309 GFIMRTPRGREVTELAYKHLG 329


>gi|317154313|ref|YP_004122361.1| Holliday junction DNA helicase RuvB [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316944564|gb|ADU63615.1| Holliday junction DNA helicase RuvB [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 327

 Score =  356 bits (913), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 178/327 (54%), Positives = 238/327 (72%), Gaps = 4/327 (1%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           +++N   E++    +RPR L +F GQ E  +NL VFI AA  R   LDH LF G PGLGK
Sbjct: 1   MTKNTLPEES----VRPRRLGDFIGQDELRANLDVFIRAATERDRPLDHTLFYGNPGLGK 56

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127
           TTLA+++A ELGVN  +TSGPV+ ++GDLAA+LTNL+  D+LFIDEIHR+   VEE+LYP
Sbjct: 57  TTLARIMASELGVNMVTTSGPVMERSGDLAAILTNLDRGDILFIDEIHRMPATVEEVLYP 116

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           AMEDFQ+DL++G GP AR+VK++L  FTL+ ATTR+GLLT+PL+DRFG   R+ FY  E+
Sbjct: 117 AMEDFQIDLIIGSGPGARTVKLDLEPFTLVGATTRLGLLTSPLRDRFGCIFRIEFYSPEE 176

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           L  IV+R A + G+ V    A  I  R+RGTPRIA RLLRRVRD+A V    T+TREIA+
Sbjct: 177 LGRIVERAATIIGVHVDSGGALAIGRRARGTPRIANRLLRRVRDYALVHGDGTVTREIAE 236

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           ++L RL +D+ G D +D + L+++  NF GGPVG++TI+A  +E    IED+ EPY+IQ 
Sbjct: 237 SSLERLEVDQHGLDTMDRKILSLMVENFNGGPVGLKTIAAACAEEVRTIEDIYEPYLIQC 296

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           GF++RTPRGR+    A+QHL + +  R
Sbjct: 297 GFLKRTPRGRVATAKAYQHLKMRMDDR 323


>gi|295107076|emb|CBL04619.1| Holliday junction DNA helicase subunit RuvB [Gordonibacter
           pamelaeae 7-10-1-b]
          Length = 355

 Score =  356 bits (913), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 172/311 (55%), Positives = 235/311 (75%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L ++ GQ +   +L + IEAA+AR + +DH+LF GPPGLGKTTLA VVA ELG +
Sbjct: 43  LRPKRLGDYLGQTKVKESLAILIEAARARGDVVDHILFSGPPGLGKTTLATVVANELGAS 102

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R+TSGP I + GDLAA+LTNLE+ DVLFIDEIHRL+ +VEE+LYPA+EDF LD++VG+G
Sbjct: 103 IRTTSGPAIERTGDLAAILTNLEEGDVLFIDEIHRLNRMVEEVLYPALEDFALDIVVGKG 162

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS++++L  FTLI ATTR GLLT PL+DRFG+  RL +Y  E+L +IV R A + G+
Sbjct: 163 PAARSIRLDLPHFTLIGATTRTGLLTGPLRDRFGMVFRLAYYTPEELGSIVCRSAAILGV 222

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + ++ A EIA RSRGTPR+A RLL+RVRD+A+V    TI  ++A  AL    +D +G D
Sbjct: 223 DIAEDGALEIARRSRGTPRLANRLLKRVRDWAQVRGDGTIDEDVAAQALSFFEVDALGLD 282

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D R L ++A  FGG PVG+ T+++ LSE  D++ED+ EP+++QQG + RTP+GR   P
Sbjct: 283 AVDNRILELLAVQFGGRPVGLSTLASALSEDPDSLEDVYEPFLMQQGLMVRTPKGRQATP 342

Query: 322 IAWQHLGIDIP 332
            A++HLGI +P
Sbjct: 343 RAYEHLGIALP 353


>gi|332292205|ref|YP_004430814.1| Holliday junction DNA helicase RuvB [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332170291|gb|AEE19546.1| Holliday junction DNA helicase RuvB [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 340

 Score =  356 bits (913), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 179/317 (56%), Positives = 232/317 (73%), Gaps = 1/317 (0%)

Query: 13  SQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           S+ED D+   LRP + ++F GQ +   NLK+F++AA  R EALDH LF GPPGLGKTTLA
Sbjct: 13  SREDVDVEKALRPLSFDDFAGQDQVLENLKIFVQAANLRGEALDHTLFHGPPGLGKTTLA 72

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            ++A EL VN + TSGPV+ K GDLA LLTNL++RDVLFIDEIHRLS IVEE LY AMED
Sbjct: 73  NILANELDVNIKITSGPVLDKPGDLAGLLTNLDERDVLFIDEIHRLSPIVEEYLYSAMED 132

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           +++D+M+  GP+ARSV+I+L+ FTL+ ATTR GLLT P++ RFGI  RL +Y  E L TI
Sbjct: 133 YRIDIMIETGPNARSVQIDLAPFTLVGATTRSGLLTAPMRARFGISSRLQYYTTELLTTI 192

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           V+R + + G+ ++ EAA EIA RSRGTPRIA  LLRRVRDFA++    +I   IA  +L 
Sbjct: 193 VERSSSILGVPISMEAAVEIAGRSRGTPRIANALLRRVRDFAQIKGNGSIDIAIAKYSLE 252

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L +D  G D++D + L  I   F GGPVGI T++  +SE  + IE++ EP++IQQGFI 
Sbjct: 253 ALNVDAHGLDEMDNKILATIIDKFKGGPVGITTLATAVSESAETIEEVYEPFLIQQGFIM 312

Query: 312 RTPRGRLLMPIAWQHLG 328
           RTPRGR +   A++HLG
Sbjct: 313 RTPRGREVTEEAYRHLG 329


>gi|225572216|ref|ZP_03781080.1| hypothetical protein RUMHYD_00510 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040278|gb|EEG50524.1| hypothetical protein RUMHYD_00510 [Blautia hydrogenotrophica DSM
           10507]
          Length = 332

 Score =  356 bits (913), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 168/309 (54%), Positives = 233/309 (75%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP++L E+ GQ +    LK++IEAA+ R +ALDHVLF GPPGLGKTTLA ++A E+GV+
Sbjct: 23  LRPQSLSEYIGQEKTKKTLKIYIEAARQRGDALDHVLFYGPPGLGKTTLAGIIANEMGVH 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGP I K G++AA+L NL++ DVLF+DEIHRL+  VEE+LYPAMED+ +D+M+G+G
Sbjct: 83  MKVTSGPAIEKPGEMAAILNNLQEGDVLFVDEIHRLNRQVEEVLYPAMEDYAIDIMIGKG 142

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            SARS++++L +FTL+ ATTR GLLT PL+DRFG+   L FY + +L TI+ R A++  +
Sbjct: 143 ASARSIRLDLPKFTLVGATTRAGLLTAPLRDRFGVMHHLEFYTVLELTTIILRSAQVLEV 202

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  + A EIA RSRGTPR+A RLL+RVRDFA+V +   IT E+A  AL  L +D+ G D
Sbjct: 203 EIEPKGAQEIAKRSRGTPRLANRLLKRVRDFAQVKYDGKITLEVAQFALDLLEVDQYGLD 262

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           Q+D R L  +  NF GGPVG+ET++A + E    +ED+ EPY++Q GF+ RTPRGR+   
Sbjct: 263 QVDRRILKTLIINFQGGPVGLETLAASVGEDPGTVEDVYEPYLLQNGFLSRTPRGRIASD 322

Query: 322 IAWQHLGID 330
           +A++HLGI+
Sbjct: 323 LAYRHLGIE 331


>gi|294675102|ref|YP_003575718.1| Holliday junction DNA helicase RuvB [Prevotella ruminicola 23]
 gi|294472981|gb|ADE82370.1| Holliday junction DNA helicase RuvB [Prevotella ruminicola 23]
          Length = 345

 Score =  356 bits (913), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 178/330 (53%), Positives = 237/330 (71%), Gaps = 2/330 (0%)

Query: 1   MMDRE-GLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           MMD +  +     SQ + D  + LRP +  +F+GQ +   NL+VF+EAAK R E LDH L
Sbjct: 1   MMDEDFDIREERFSQGEKDFENALRPLSFSDFSGQKKVVENLEVFVEAAKYRGEPLDHTL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTL+ ++A ELGV F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS
Sbjct: 61  LHGPPGLGKTTLSNIIANELGVGFKITSGPVLDKPGDLAGILTSLEKNDVLFIDEIHRLS 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            +VEE LY AMED+++D+M+ +GPSARS++I+L+ FTL+ ATTR GLLT PL+ RFGI +
Sbjct: 121 PVVEEYLYSAMEDYRIDIMIDKGPSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGINM 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
            L +YE E L+ I++R A + G+ +T++AA EIA RSRGTPRIA  LLRRVRDFA+V   
Sbjct: 181 HLEYYEPETLQAIIERSANILGVPITEDAALEIAGRSRGTPRIANALLRRVRDFAQVKGN 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
            TI  +I   AL  L IDK G D++D + L  I   F GGPVGI TI+  + E    +E+
Sbjct: 241 GTIDTKITRVALTALNIDKYGLDEIDNKILLTIIDKFRGGPVGITTIATAIGEDAGTVEE 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
           + EP++I +GFI+RTPRGR++  +A++H G
Sbjct: 301 VYEPFLIMEGFIKRTPRGRMVTELAYKHFG 330


>gi|300813210|ref|ZP_07093578.1| Holliday junction DNA helicase RuvB [Peptoniphilus sp. oral taxon
           836 str. F0141]
 gi|300512663|gb|EFK39795.1| Holliday junction DNA helicase RuvB [Peptoniphilus sp. oral taxon
           836 str. F0141]
          Length = 334

 Score =  355 bits (912), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 175/326 (53%), Positives = 233/326 (71%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           E ++  N S ED     LRP+ L ++ GQ +  + LK+FI+AAK R E LDH L  GPPG
Sbjct: 3   ERIIDANFSVEDKQEINLRPKWLLDYIGQDKVINKLKIFIKAAKNRKEPLDHTLLSGPPG 62

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLA ++A E+GVN + TSGP I + GDLA++LTNL++ DVLFIDEIHRL+  VEEI
Sbjct: 63  LGKTTLAGIIANEMGVNIKVTSGPAIERQGDLASILTNLKEDDVLFIDEIHRLNKSVEEI 122

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPAMED+ LD+++G+GPSARS++++L++FTLI ATTR G+LT+PL+DRFG+ + +  Y 
Sbjct: 123 LYPAMEDYALDIIIGKGPSARSIRLDLAKFTLIGATTRSGMLTSPLRDRFGVLLNMELYS 182

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           I+ L  IV R A++  + +  E A EIA RSRGTPRIA RLL+RVRD+AEV     IT +
Sbjct: 183 IDALTKIVIRSAEILNIPIEKEGALEIAKRSRGTPRIANRLLKRVRDYAEVVERGVITEK 242

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +A   L  L IDK G D +D + +  +  NF G PVGI+ ISA + E R  +ED+ EPY+
Sbjct: 243 VAVKGLNLLEIDKYGLDNIDRKIILTMIENFVGRPVGIDAISASIGEDRITVEDVYEPYL 302

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGID 330
           +Q GFI RTPRGRL    A+ H G++
Sbjct: 303 MQIGFIVRTPRGRLATKKAYDHFGLE 328


>gi|295132462|ref|YP_003583138.1| Holliday junction DNA helicase B [Zunongwangia profunda SM-A87]
 gi|294980477|gb|ADF50942.1| Holliday junction DNA helicase B [Zunongwangia profunda SM-A87]
          Length = 340

 Score =  355 bits (912), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 183/319 (57%), Positives = 228/319 (71%), Gaps = 1/319 (0%)

Query: 11  NVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           N S E+ DI   LRP + ++F GQ +   NLKVF+ AA  R+EALDH L  GPPGLGKTT
Sbjct: 11  NFSPEEFDIERALRPLSFDDFAGQEQVLDNLKVFVAAANLRSEALDHTLLHGPPGLGKTT 70

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           LA ++A ELGV  + TSGPV+ K GDLA LLTNL++RD+LFIDEIHRLS IVEE LY AM
Sbjct: 71  LAHILANELGVGLKITSGPVLDKPGDLAGLLTNLDERDILFIDEIHRLSPIVEEYLYSAM 130

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           ED+++D+M+  GP+ARSV++NLS FTLI ATTR GLLT P++ RFGI  RL +Y  E L 
Sbjct: 131 EDYRIDIMIESGPNARSVQLNLSPFTLIGATTRSGLLTAPMRARFGISSRLQYYSTELLS 190

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            IVQR A++  + +T EAA EIA RSRGTPRIA  LLRRVRDFA++     I   IA   
Sbjct: 191 DIVQRSAQILKVPITMEAAIEIAGRSRGTPRIANALLRRVRDFAQIKGDGKIDIGIAKYG 250

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           L  L +D  G D++D R L  I   F GGPVGI T++  +SE  + IE++ EP++IQQGF
Sbjct: 251 LKALNVDAHGLDEMDNRILETIIDKFKGGPVGITTLATAVSESAETIEEVYEPFLIQQGF 310

Query: 310 IQRTPRGRLLMPIAWQHLG 328
           I RTPRGR +   A++HLG
Sbjct: 311 IYRTPRGREVTEAAYKHLG 329


>gi|260060661|ref|YP_003193741.1| Holliday junction DNA helicase RuvB [Robiginitalea biformata
           HTCC2501]
 gi|88784791|gb|EAR15960.1| Holliday junction DNA helicase RuvB [Robiginitalea biformata
           HTCC2501]
          Length = 340

 Score =  355 bits (912), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 179/318 (56%), Positives = 230/318 (72%), Gaps = 1/318 (0%)

Query: 12  VSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           +S E+ DI   LRP + ++FTGQ +   NL VF++AA  R EALDH L  GPPGLGKTTL
Sbjct: 12  LSPEELDIERALRPVSFDDFTGQAQVLENLTVFVQAANLRQEALDHTLLHGPPGLGKTTL 71

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           A ++A ELGV  + TSGPV+ K GDLA LLTNLE RDVLFIDEIHRLS +VEE LY AME
Sbjct: 72  AHILANELGVGLKVTSGPVLDKPGDLAGLLTNLEPRDVLFIDEIHRLSPVVEEYLYSAME 131

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           DF++D+M+  GP+ARSV+++L+ FTL+ ATTR GLLT P++ RFGI  RL +Y  E L T
Sbjct: 132 DFKIDIMIETGPNARSVQLHLNPFTLVGATTRSGLLTAPMRARFGISSRLEYYNTELLAT 191

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           IVQR A++  + +T++AA EIA RSRGTPRI   LLRRVRDFA++     I  EI+   L
Sbjct: 192 IVQRSAEILKVPITEDAAIEIAGRSRGTPRICNALLRRVRDFAQIKGNGNIDMEISRFGL 251

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
             L +D  G D++D + L  I   F GGPVG+ T++  +SE  + IE++ EP++IQQGFI
Sbjct: 252 KALHVDAYGLDEMDNKILATIIDKFKGGPVGLTTLATAVSENAETIEEVYEPFLIQQGFI 311

Query: 311 QRTPRGRLLMPIAWQHLG 328
            RTPRGR +  +A+QHLG
Sbjct: 312 MRTPRGREVTELAYQHLG 329


>gi|162455498|ref|YP_001617865.1| Holliday junction DNA helicase RuvB [Sorangium cellulosum 'So ce
           56']
 gi|161166080|emb|CAN97385.1| holliday junction DNA helicase [Sorangium cellulosum 'So ce 56']
          Length = 340

 Score =  355 bits (911), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 178/312 (57%), Positives = 223/312 (71%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           L RP +L E+ GQ +   NLKVF+EAA+ R E LDH+LF GPPGLGKTTLA ++ARE+GV
Sbjct: 20  LFRPASLAEYVGQAKHTENLKVFVEAARRRREPLDHMLFCGPPGLGKTTLAHIIAREMGV 79

Query: 81  NFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
               TSGP I   G LA LLT LE  DVLFIDEIHRL+  VEE LYPA+E F +D+M G+
Sbjct: 80  ALHVTSGPAIEHKGALAGLLTKLERNDVLFIDEIHRLTPAVEESLYPAIESFNIDIMTGD 139

Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
           GP A ++++ L  FTL+ ATTR GLLT PL  RFG  +RL+FY +E+L+ IVQR A L  
Sbjct: 140 GPYATTIQLALKPFTLVGATTRTGLLTAPLLSRFGHVVRLDFYPVEELQRIVQRSAGLLD 199

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGF 260
           + +    A EIA R+RGTPR+A RLLRRVRDFAEV     IT EIA     RL ID  G 
Sbjct: 200 VPIDAGGAREIAARARGTPRVANRLLRRVRDFAEVLGDGAITMEIARKTAERLEIDAAGL 259

Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320
           D++D R L +I  ++ GGPVGI+T++A LSEPRD IED+ EP+++QQGF+ RTPRGR+  
Sbjct: 260 DEMDRRLLRVIVDHYDGGPVGIDTLAAALSEPRDTIEDVYEPFLLQQGFVGRTPRGRVAT 319

Query: 321 PIAWQHLGIDIP 332
             A++HLG+  P
Sbjct: 320 RRAYEHLGLAAP 331


>gi|228474115|ref|ZP_04058856.1| holliday junction DNA helicase RuvB [Capnocytophaga gingivalis ATCC
           33624]
 gi|228274629|gb|EEK13470.1| holliday junction DNA helicase RuvB [Capnocytophaga gingivalis ATCC
           33624]
          Length = 341

 Score =  355 bits (911), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 180/319 (56%), Positives = 233/319 (73%), Gaps = 1/319 (0%)

Query: 11  NVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           N+S ++ DI   LRP + ++FTGQ     NLK+F++AA  R EALDH LF GPPGLGKTT
Sbjct: 11  NLSPQELDIERALRPLSFDDFTGQEAILENLKIFVKAANLRGEALDHTLFHGPPGLGKTT 70

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           LA ++A ELGV  + TSGPV+ K GDLA LLTNLE RDVLFIDEIHRLS IVEE LY AM
Sbjct: 71  LANILANELGVGIKITSGPVLDKPGDLAGLLTNLEPRDVLFIDEIHRLSPIVEEYLYSAM 130

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           ED+++D+M+  GP+AR+V+I+L+ FTLI ATTR GLLT P++ RFGI  RL +Y  E L 
Sbjct: 131 EDYKIDIMIESGPNARTVQISLNPFTLIGATTRSGLLTAPMRARFGIQSRLQYYTTELLA 190

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            I+QR A++ G+ +++EAA E+A RSRGTPRIA  LLRRVRDFA++     I  EI   A
Sbjct: 191 NILQRSAQILGVPISEEAAIELAGRSRGTPRIANALLRRVRDFAQIKGNGKIDIEITRFA 250

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           L  L +D  G D++D + L  I   F GGPVGI T++  +SE  + +E++ EP++IQQGF
Sbjct: 251 LKALNVDAHGLDEMDNKILLTIIDKFKGGPVGITTLATAVSENAETLEEVYEPFLIQQGF 310

Query: 310 IQRTPRGRLLMPIAWQHLG 328
           I RTPRGR +  +A++HLG
Sbjct: 311 IIRTPRGREVTDLAYKHLG 329


>gi|317485563|ref|ZP_07944440.1| Holliday junction DNA helicase RuvB [Bilophila wadsworthia 3_1_6]
 gi|316923243|gb|EFV44452.1| Holliday junction DNA helicase RuvB [Bilophila wadsworthia 3_1_6]
          Length = 342

 Score =  355 bits (910), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 175/325 (53%), Positives = 240/325 (73%), Gaps = 3/325 (0%)

Query: 8   LSRNVSQEDADIS---LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           L++ +S  D+  S    +RP  LE+F GQ E  +NL+VF+ AA+ R +A+DHVLF G PG
Sbjct: 16  LAKELSAPDSGSSGDESIRPSRLEDFIGQEELRANLRVFLNAARERGQAMDHVLFYGNPG 75

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLAQ++A ELGVN   TSGPV+ ++GDLAA+LTNL   D+LF+DEIHR+ I VEEI
Sbjct: 76  LGKTTLAQIMAAELGVNLICTSGPVLERSGDLAAILTNLSRHDILFVDEIHRMPIAVEEI 135

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPA+ED++LDL++G+GP+AR+VKI+L  FTL+ ATTR+GLL++PL+DRFGI  RL FY 
Sbjct: 136 LYPALEDYKLDLVIGQGPAARTVKIDLEPFTLVGATTRIGLLSSPLRDRFGIISRLEFYT 195

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            E+L  +V R +++ G+ +T+  A EI  RSRGTPRIA RLLRRVRDFA V  +  +  E
Sbjct: 196 PEELSRVVIRSSRILGVPITEGGALEIGRRSRGTPRIANRLLRRVRDFAAVYGSGVVDEE 255

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
            A  AL R+ +D+ G DQ+D + L ++   +GGGPVG++T++   SE    IED+ EPY+
Sbjct: 256 QASHALRRMDVDENGLDQMDRKLLRVLVDIYGGGPVGVKTLAVACSEEVRTIEDIYEPYL 315

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGI 329
           IQ GF++RT RGR+    A++HL +
Sbjct: 316 IQCGFLKRTSRGRMATAKAYKHLNM 340


>gi|221632730|ref|YP_002521951.1| Holliday junction DNA helicase RuvB [Thermomicrobium roseum DSM
           5159]
 gi|254767447|sp|B9KZ09|RUVB_THERP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|221155832|gb|ACM04959.1| Holliday junction DNA helicase RuvB [Thermomicrobium roseum DSM
           5159]
          Length = 353

 Score =  355 bits (910), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 177/312 (56%), Positives = 231/312 (74%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPR L E+ GQ     +L + I AA+ R E LDH+LF GPPGLGKTTLA ++A E+GVN
Sbjct: 22  LRPRRLAEYIGQDRVKESLAIAIRAAQERGEPLDHLLFYGPPGLGKTTLAGIIAAEMGVN 81

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGP I + GDL ++LTNL   DVLFIDEIHRL+ +VEEILYPAMEDF +DL++G+G
Sbjct: 82  LRITSGPAIERPGDLVSILTNLRPGDVLFIDEIHRLNRLVEEILYPAMEDFAVDLVIGKG 141

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARSV+I L RFTL+ ATTR+ LLT+PL+DRFG   RL+FY+   L+ IV+R A++  +
Sbjct: 142 PAARSVRIALPRFTLVGATTRLALLTSPLRDRFGATYRLDFYDTAALRAIVERAARILQV 201

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T + A EIA R RGTPRIA RLL+RVRD+A+V    TITRE+A  AL +LA+D++G D
Sbjct: 202 PITSDGAEEIARRGRGTPRIAIRLLKRVRDYAQVIGDGTITRELARLALDQLAVDELGLD 261

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           ++D   L  +   F GGPVGI+T++A  SE  D IE + EPY++Q GF+QRTPRGR+   
Sbjct: 262 EVDRLILRTLVEKFDGGPVGIQTLAAATSEEPDTIESVYEPYLLQLGFLQRTPRGRIATR 321

Query: 322 IAWQHLGIDIPH 333
            A++HLG+  P 
Sbjct: 322 RAYEHLGLTYPE 333


>gi|303328182|ref|ZP_07358620.1| holliday junction DNA helicase RuvB [Desulfovibrio sp. 3_1_syn3]
 gi|302861512|gb|EFL84448.1| holliday junction DNA helicase RuvB [Desulfovibrio sp. 3_1_syn3]
          Length = 324

 Score =  355 bits (910), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 172/306 (56%), Positives = 234/306 (76%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR+L++F GQ E  +NL+V+++AA+ R +ALDH LF G PGLGKTTLAQ++A ELGVN
Sbjct: 14  VRPRSLDDFIGQDELRANLRVYLDAARERGKALDHTLFYGNPGLGKTTLAQIMASELGVN 73

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
              TSGPV+ ++GDLAA+LTNL   D+LF+DEIHR+ I VEE+LYPAMEDF+LDL++G+G
Sbjct: 74  LVCTSGPVLERSGDLAAILTNLGRHDILFVDEIHRMPIAVEEVLYPAMEDFKLDLVIGQG 133

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+AR+VKI+L  FTL+ ATTR+GL+++PL+DRFGI  RL +Y   DL  +V+R A++ G+
Sbjct: 134 PAARTVKIDLEPFTLVGATTRMGLISSPLRDRFGIVARLEYYSPTDLARVVRRTARILGV 193

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            VT + A EI  RSRGTPRIA RLLRRVRDFA +     +T   A AAL R+ +D+ G D
Sbjct: 194 EVTPDGAEEIGRRSRGTPRIANRLLRRVRDFALIRGNGQVTGGEASAALKRMDVDEHGLD 253

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           Q+D + L ++  ++ GGPVGI+T++   SE    IED+ EPY+IQ GF++RTPRGR+   
Sbjct: 254 QMDRKLLEVLITHYDGGPVGIKTLAVACSEEVRTIEDIYEPYLIQCGFLKRTPRGRMATA 313

Query: 322 IAWQHL 327
            A++HL
Sbjct: 314 RAYKHL 319


>gi|224372722|ref|YP_002607094.1| Holliday junction DNA helicase RuvB [Nautilia profundicola AmH]
 gi|223589928|gb|ACM93664.1| holliday junction DNA helicase RuvB [Nautilia profundicola AmH]
          Length = 330

 Score =  355 bits (910), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 166/306 (54%), Positives = 231/306 (75%), Gaps = 2/306 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L+E+ GQ +   NLKVFIEAAK R E+LDH+LF GPPGLGKTTLA ++A E+G N
Sbjct: 19  LRPQNLDEYIGQEQIKKNLKVFIEAAKKRGESLDHILFFGPPGLGKTTLANIIASEMGSN 78

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            ++ S P++ K+GDLAA+LTNLED D+LFIDEIHRL   +EE+LY AMEDF+LD+++G G
Sbjct: 79  LKTISAPMLEKSGDLAAILTNLEDGDILFIDEIHRLKASIEEVLYSAMEDFRLDIVIGSG 138

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+A+++K++++RFTLI ATTR G+L+NPL+DRFG+  RLNFY  E+L  I++  A+    
Sbjct: 139 PAAQTIKLDVARFTLIGATTRAGMLSNPLRDRFGMSFRLNFYNHEELSEIIRLAAQKLSK 198

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +   AA EIA RSRGTPRIA RLL+RVRDFAE+    TIT +    AL  L I++ GFD
Sbjct: 199 EIESNAAVEIAKRSRGTPRIALRLLKRVRDFAEIKDENTITHKTTKYALDELGINEHGFD 258

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           +LD+++LT++A      P+G+ TI+A LSE    IE++IEP+++  GF+++TP+GR+   
Sbjct: 259 ELDIKFLTLLAD--AKKPIGLSTIAAALSEDEGTIEEVIEPFLLANGFVEKTPKGRIATR 316

Query: 322 IAWQHL 327
            A++ L
Sbjct: 317 KAYEIL 322


>gi|222529108|ref|YP_002572990.1| Holliday junction DNA helicase RuvB [Caldicellulosiruptor bescii
           DSM 6725]
 gi|254767406|sp|B9MRB3|RUVB_ANATD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|222455955|gb|ACM60217.1| Holliday junction DNA helicase RuvB [Caldicellulosiruptor bescii
           DSM 6725]
          Length = 338

 Score =  355 bits (910), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 171/323 (52%), Positives = 229/323 (70%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           E LL    S ED     LRP+TLEE+ GQ +    +K+FIEAAK R E LDHVL  GPPG
Sbjct: 2   ERLLDNKFSIEDVHEESLRPKTLEEYIGQQKVKEKIKIFIEAAKKRKEPLDHVLLYGPPG 61

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLA ++A E+GV+ + TSGP I +AGDL A+LTN+ + ++LFIDEIHRL+  +EE+
Sbjct: 62  LGKTTLANIIANEMGVDIKITSGPAIERAGDLVAILTNIGENNILFIDEIHRLNRTIEEV 121

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPAMED ++D+++G+GPSA+++++ L  FTLI ATTR GLL++PL+DRFGI  RL++Y 
Sbjct: 122 LYPAMEDKKVDIVIGKGPSAKTIRLTLPPFTLIGATTRAGLLSSPLRDRFGIIERLDYYT 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +E+L  IV R A +    +  EA  EIA RSRGTPR+A RLLRR+RD+A V H  +IT E
Sbjct: 182 VEELSQIVMRSASILKCDIEKEACIEIAKRSRGTPRVANRLLRRLRDYAMVKHTGSITYE 241

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +A + L    +D+ G D +D   L  I   FGGGPVG+ TI+A +SE    IED+ EPY+
Sbjct: 242 VAKSGLEMFEVDEYGLDLVDRNILEAIVYKFGGGPVGLSTIAAAISEDEGTIEDIYEPYL 301

Query: 305 IQQGFIQRTPRGRLLMPIAWQHL 327
           IQ+GF+ +T RGR+    A  H+
Sbjct: 302 IQEGFLVKTARGRVATQKAISHI 324


>gi|305665240|ref|YP_003861527.1| Holliday junction DNA helicase RuvB [Maribacter sp. HTCC2170]
 gi|88709993|gb|EAR02225.1| Holliday junction DNA helicase RuvB [Maribacter sp. HTCC2170]
          Length = 340

 Score =  355 bits (910), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 185/321 (57%), Positives = 235/321 (73%), Gaps = 1/321 (0%)

Query: 9   SRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           S N++ E+ DI   LRP T ++FTGQ +   NLKVF+EAA  R EALDH LF GPPGLGK
Sbjct: 9   SENLTPEEIDIERALRPITFDDFTGQEQVLENLKVFVEAANQRDEALDHTLFHGPPGLGK 68

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127
           TTLA ++A ELGV  + TSGPV+ K GDLA LLTNL++RDVLFIDEIHRLS IVEE LY 
Sbjct: 69  TTLAHILANELGVGIKITSGPVLDKPGDLAGLLTNLQERDVLFIDEIHRLSPIVEEYLYS 128

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           AMED+++D+M+  GP+ARSV+INL+ FTLI ATTR GLLT P++ RFGI  RL +Y  E 
Sbjct: 129 AMEDYKIDIMIETGPNARSVQINLNPFTLIGATTRSGLLTAPMRARFGIQSRLQYYSTEL 188

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           L TIV+R A++  + +  +AA EIA RSRGTPRI   LLRRVRDFA++     I  EI+ 
Sbjct: 189 LSTIVERSAEILKVPIAIDAAIEIAGRSRGTPRICNSLLRRVRDFAQIKGNGNIDMEISK 248

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
            +L  L +D  G D++D + LT I   F GGPVGI T++  +SE  + IE++ EP++IQQ
Sbjct: 249 YSLKALNVDAHGLDEMDNKILTTIIDKFKGGPVGITTLATAVSESAETIEEVYEPFLIQQ 308

Query: 308 GFIQRTPRGRLLMPIAWQHLG 328
           GFI RTPRGR +  +A++HLG
Sbjct: 309 GFIMRTPRGREVTELAYKHLG 329


>gi|290893934|ref|ZP_06556910.1| ruvB protein [Listeria monocytogenes FSL J2-071]
 gi|290556472|gb|EFD90010.1| ruvB protein [Listeria monocytogenes FSL J2-071]
          Length = 335

 Score =  355 bits (910), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 182/329 (55%), Positives = 233/329 (70%), Gaps = 1/329 (0%)

Query: 2   MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD   + S  V  E+    + LRP+TL ++ GQ +  +NL VFIEAAK R EALDHVL  
Sbjct: 1   MDERIISSETVDAEEVSFETSLRPQTLSQYIGQDKVKNNLTVFIEAAKLRNEALDHVLLY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA V+A E+G   ++TSGP I + GDLA +LT+LE  DVLFIDEIHRLS  
Sbjct: 61  GPPGLGKTTLAMVIASEMGSQIKTTSGPAIERPGDLATILTSLEPGDVLFIDEIHRLSRA 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EEILYPAMED+ LD+++G GP+ARSV+++L  FTLI ATTR GLL+ PL+DRFG+   L
Sbjct: 121 IEEILYPAMEDYCLDIVIGTGPTARSVRLDLPPFTLIGATTRAGLLSAPLRDRFGVIDHL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  E L  IV R + +    + D  A EIA RSRGTPRIA RLL+RVRDFA+V    T
Sbjct: 181 EFYTEEQLTEIVLRTSNILDTKIDDLGAREIARRSRGTPRIANRLLKRVRDFAQVRGNGT 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +T ++A  AL  L +D  G D +D + L  I ++F GGPVG++TI+A + E R+ IED+ 
Sbjct: 241 VTEKLAKEALTLLQVDPRGLDTIDQKLLHTIIQSFRGGPVGLDTIAASIGEERETIEDMQ 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           EPY++Q GF+QRTPRGR+    A+ HLGI
Sbjct: 301 EPYLLQIGFLQRTPRGRIATETAYNHLGI 329


>gi|298206841|ref|YP_003715020.1| Holliday junction DNA helicase RuvB [Croceibacter atlanticus
           HTCC2559]
 gi|83849475|gb|EAP87343.1| Holliday junction DNA helicase RuvB [Croceibacter atlanticus
           HTCC2559]
          Length = 340

 Score =  354 bits (909), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 179/319 (56%), Positives = 227/319 (71%), Gaps = 1/319 (0%)

Query: 11  NVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           + S+E+ DI   LRP +  +F GQ +   NLK+F+EAA  R EALDH LF GPPGLGKTT
Sbjct: 11  SFSKEEFDIERALRPLSFSDFAGQDQVLENLKIFVEAANQRNEALDHTLFHGPPGLGKTT 70

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           LA ++A EL V  + TSGPV+ K GDLA LLTNLE RDVLFIDEIHRLS ++EE LY AM
Sbjct: 71  LAHILANELNVGIKVTSGPVLDKPGDLAGLLTNLEPRDVLFIDEIHRLSPVIEEYLYSAM 130

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           ED+++D+M+  GP+ARSV+INL+ FTLI ATTR GLLT P++ RFGI  RL +Y  E L 
Sbjct: 131 EDYKIDIMIETGPNARSVQINLNPFTLIGATTRSGLLTAPMRARFGISSRLQYYSTELLS 190

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
           TIV+R + +  + +  EAA EIA RSRGTPRIA  LLRRVRDFA++     I   I+   
Sbjct: 191 TIVERSSSILNVPIDLEAAIEIAGRSRGTPRIANALLRRVRDFAQIKGNGRIDMSISKFG 250

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           L  L +D  G D++D R L+ I   F GGPVGI T++  +SE  + IE++ EP++IQQGF
Sbjct: 251 LKALNVDANGLDEMDNRILSTIIEKFKGGPVGITTLATAVSESAETIEEVYEPFLIQQGF 310

Query: 310 IQRTPRGRLLMPIAWQHLG 328
           I RTPRGR +   A++HLG
Sbjct: 311 IMRTPRGREVTEAAYKHLG 329


>gi|156742996|ref|YP_001433125.1| Holliday junction DNA helicase RuvB [Roseiflexus castenholzii DSM
           13941]
 gi|189046043|sp|A7NNH1|RUVB_ROSCS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|156234324|gb|ABU59107.1| Holliday junction DNA helicase RuvB [Roseiflexus castenholzii DSM
           13941]
          Length = 347

 Score =  354 bits (909), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 182/334 (54%), Positives = 236/334 (70%), Gaps = 1/334 (0%)

Query: 2   MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M  E +++    +ED  I   LRPR L EF GQ +    L++ I AAK R E LDH L  
Sbjct: 1   MSDERVVTPRAGEEDQQIEKSLRPRRLAEFIGQEKVVEQLRIAIAAAKGRGEPLDHTLLY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKT+LA V+A E+ VN + TSGP I +AGDLAALLTNL+  D+LFIDEIHRL+  
Sbjct: 61  GPPGLGKTSLAGVLANEMEVNIKLTSGPAIERAGDLAALLTNLQKDDILFIDEIHRLNRA 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EE+LYPAMEDF LD+MVG+GP ARS+++ L RFT++ ATTR+ LLT+PL+DRFG   RL
Sbjct: 121 IEEVLYPAMEDFALDIMVGKGPGARSLRLKLPRFTVVGATTRLALLTSPLRDRFGSVHRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY ++ L  IV R A++ G+  T E A EIA R+RGTPRI  RLLRRVRD+A+V     
Sbjct: 181 EFYSVDALYEIVMRSARILGVVCTPEGAREIAARARGTPRIVNRLLRRVRDYAQVIGDGI 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           IT ++A  AL +L +D +G D+ D R L  I   FGGGPVG+ T++A L+E  DAIED+ 
Sbjct: 241 ITLDVARDALAKLEVDHLGLDENDRRLLRAIIDLFGGGPVGLSTLAASLAEEVDAIEDVY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           EP+++Q GF+QRTPRGR+    A++HLG+    R
Sbjct: 301 EPFLLQLGFLQRTPRGRIATRRAYEHLGVPYVER 334


>gi|225410072|ref|ZP_03761261.1| hypothetical protein CLOSTASPAR_05293 [Clostridium asparagiforme
           DSM 15981]
 gi|225042420|gb|EEG52666.1| hypothetical protein CLOSTASPAR_05293 [Clostridium asparagiforme
           DSM 15981]
          Length = 331

 Score =  354 bits (909), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 171/326 (52%), Positives = 238/326 (73%), Gaps = 1/326 (0%)

Query: 7   LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           +++  V+ ED  I + LRP+ L+++ GQ    S LK++I+AA++R EALDHVLF GPPGL
Sbjct: 5   IITTEVTAEDERIETTLRPQHLKDYIGQERLKSTLKIYIDAARSRGEALDHVLFYGPPGL 64

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLA ++A E+GV+ + TSGP I K G++AA+L NL++ DVLF+DEIHRL+  VEE+L
Sbjct: 65  GKTTLAGIIANEMGVSMKVTSGPAIEKPGEMAAILNNLQEGDVLFVDEIHRLNRQVEEVL 124

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           YPAMED+ +D+M+G+  SARS++++L  FTL+ ATTR GLLT PL+DRFG+  RL FY  
Sbjct: 125 YPAMEDYAIDIMLGKEASARSIRLDLPHFTLVGATTRAGLLTAPLRDRFGVVQRLEFYTP 184

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           E+L  I+   AK+ G+ +    A E+A RSRGTPR+A RLL+RVRDFA+V +   ITRE+
Sbjct: 185 EELTVIILNSAKVLGVEIDKSGALELARRSRGTPRLANRLLKRVRDFAQVKYDGVITREV 244

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
            D AL  + +DK+G DQ D   L M+   F GGPVG++T++A L E    +ED+ EPY++
Sbjct: 245 TDFALDIMDVDKLGLDQNDRNILLMMIEKFSGGPVGLDTLAAALGEDSGTLEDVYEPYLL 304

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDI 331
             G I RTPRGR+    A++HLG++I
Sbjct: 305 MNGLINRTPRGRMATEAAYRHLGLEI 330


>gi|326336334|ref|ZP_08202505.1| crossover junction ATP-dependent DNA helicase RuvB [Capnocytophaga
           sp. oral taxon 338 str. F0234]
 gi|325691508|gb|EGD33476.1| crossover junction ATP-dependent DNA helicase RuvB [Capnocytophaga
           sp. oral taxon 338 str. F0234]
          Length = 341

 Score =  354 bits (909), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 181/321 (56%), Positives = 230/321 (71%), Gaps = 1/321 (0%)

Query: 9   SRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
             N+S ++ DI   LRP +  +FTGQ     NLK+F++AA  R EALDH LF GPPGLGK
Sbjct: 9   KNNLSPQELDIERALRPLSFNDFTGQEAILENLKIFVKAANLRGEALDHTLFHGPPGLGK 68

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127
           TTLA ++A ELGV  + TSGPV+ K GDLA LLTNLE RDVLFIDEIHRLS IVEE LY 
Sbjct: 69  TTLANILANELGVGIKITSGPVLDKPGDLAGLLTNLEPRDVLFIDEIHRLSPIVEEYLYS 128

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           AMED+++D+M+  GP+AR+V+INL+ FTLI ATTR GLLT P++ RFGI  RL +Y  E 
Sbjct: 129 AMEDYKIDIMIESGPNARTVQINLNPFTLIGATTRSGLLTAPMRARFGIQSRLQYYTTEL 188

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           L  I+QR A + G+ ++ EAA E+A RSRGTPRIA  LLRRVRDFA++     I  EI  
Sbjct: 189 LADIIQRSAHILGVPISMEAAIELAGRSRGTPRIANALLRRVRDFAQIKGNGKIDIEITR 248

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
            AL  L +D  G D++D + L  I   F GGPVGI T++  +SE  + +E++ EP++IQQ
Sbjct: 249 FALKALNVDAHGLDEMDNKILLTIIDKFKGGPVGITTLATAVSENAETLEEVYEPFLIQQ 308

Query: 308 GFIQRTPRGRLLMPIAWQHLG 328
           GFI RTPRGR +  +A++HLG
Sbjct: 309 GFIIRTPRGREVTDLAYKHLG 329


>gi|149195243|ref|ZP_01872332.1| Holliday junction DNA helicase B [Caminibacter mediatlanticus TB-2]
 gi|149134585|gb|EDM23072.1| Holliday junction DNA helicase B [Caminibacter mediatlanticus TB-2]
          Length = 330

 Score =  354 bits (909), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 168/316 (53%), Positives = 236/316 (74%), Gaps = 2/316 (0%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           VS E+     LRP+ L+E+ GQ +   NLKVFIEAAK R E+LDH+LF GPPGLGKTTLA
Sbjct: 9   VSFEEGYEKSLRPQNLDEYIGQEQIKKNLKVFIEAAKKRNESLDHMLFFGPPGLGKTTLA 68

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            ++A E+  N ++ S P++ K+GDLAA+LTNLE+ D+LFIDEIHRL   +EE+LY AMED
Sbjct: 69  NIIANEMNANIKTISAPMLEKSGDLAAILTNLEEGDILFIDEIHRLKAAIEEVLYSAMED 128

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F+LD+++G GP+A+++K+++++FTLI ATTR G+L+NPL+DRFG+  RLNFY  E+L  I
Sbjct: 129 FRLDIVIGSGPAAQTIKLDVAKFTLIGATTRAGMLSNPLRDRFGMSFRLNFYNEEELALI 188

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           ++  +K     + D+AA EIA RSRGTPRIA RLL+R+RDFAEV + K I  +IA   L 
Sbjct: 189 IKLASKKLNYEIKDDAAKEIAKRSRGTPRIALRLLKRIRDFAEVENKKIIDLKIAKYGLD 248

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L I++ GFD+LD+R+L ++       P+G+ TI+A LSE  D IE++IEP++I  GFI+
Sbjct: 249 ELGINEYGFDELDIRFLRLLVE--AKKPLGLSTIAAALSEDEDTIEEVIEPFLIANGFIE 306

Query: 312 RTPRGRLLMPIAWQHL 327
           +TP+GR+    +++ L
Sbjct: 307 KTPKGRIATRKSYEVL 322


>gi|315303292|ref|ZP_07873927.1| holliday junction DNA helicase RuvB [Listeria ivanovii FSL F6-596]
 gi|313628339|gb|EFR96837.1| holliday junction DNA helicase RuvB [Listeria ivanovii FSL F6-596]
          Length = 335

 Score =  354 bits (908), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 181/329 (55%), Positives = 234/329 (71%), Gaps = 1/329 (0%)

Query: 2   MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD   + S  V  E+    + LRP+TL ++ GQ +  +NL VFIEAA  R EALDHVL  
Sbjct: 1   MDERIISSETVDSEEVSFETSLRPQTLSQYIGQDKVKNNLTVFIEAATLRNEALDHVLLY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA V+A E+G   ++TSGP I + GDLA +LT+L+  DVLFIDEIHRLS  
Sbjct: 61  GPPGLGKTTLAMVIASEMGSQIKTTSGPAIERPGDLATILTSLDPGDVLFIDEIHRLSRA 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EE+LYPAMED+ LD+++G GP+ARSV+++L  FTLI ATTR GLL+ PL+DRFG+   L
Sbjct: 121 IEEVLYPAMEDYCLDIVIGTGPTARSVRLDLPPFTLIGATTRAGLLSAPLRDRFGVIDHL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  E L  IV R A +    + D  A EIA RSRGTPRIA RLL+RVRDFA+V    T
Sbjct: 181 EFYTEEQLTEIVLRTANILDTKIDDLGAREIARRSRGTPRIANRLLKRVRDFAQVRGNGT 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +T ++A  AL  L +D  G D +D + L  I ++F GGPVG++TI+A + E R+ IED+ 
Sbjct: 241 VTEKLAKEALTLLQVDPRGLDTIDQKLLHTIIQSFRGGPVGLDTIAASIGEERETIEDMQ 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           EPY++Q GF+QRTPRGR+   IA++HLGI
Sbjct: 301 EPYLLQIGFLQRTPRGRIATEIAYKHLGI 329


>gi|297584757|ref|YP_003700537.1| Holliday junction DNA helicase RuvB [Bacillus selenitireducens
           MLS10]
 gi|297143214|gb|ADH99971.1| Holliday junction DNA helicase RuvB [Bacillus selenitireducens
           MLS10]
          Length = 333

 Score =  354 bits (908), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 173/312 (55%), Positives = 230/312 (73%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+ L+++ GQ +   NL VFIEAA+ R EALDHVL  GPPGLGKTTLA ++A ELGV  
Sbjct: 22  RPQRLQQYIGQHQVKDNLTVFIEAARMREEALDHVLLYGPPGLGKTTLATIIANELGVQI 81

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGP 142
           R+TSGP I + GDLAA+LT LE  DVLFIDEIHRL+  VEE+LYPAMEDF LD+++G+GP
Sbjct: 82  RTTSGPAIERPGDLAAVLTALEPGDVLFIDEIHRLNRAVEEVLYPAMEDFFLDIVIGKGP 141

Query: 143 SARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLA 202
           SARSVK++L  FTL+ ATTR GLL+ PL+DRFG+  RL +Y   DL  IVQR A++  + 
Sbjct: 142 SARSVKLDLPPFTLVGATTRAGLLSAPLRDRFGVLSRLEYYTEADLNEIVQRTAQVLDVE 201

Query: 203 VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQ 262
           +   ++ E+A RSRGTPR+A R+LRRVRDFA+V     IT  +A  AL  L +D +G D 
Sbjct: 202 MAGTSSVEVARRSRGTPRVANRILRRVRDFAQVRGDGIITDALAKEALDLLQVDPLGLDH 261

Query: 263 LDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPI 322
           +D + L  +   F GGPVG++TI+A + E  D IED+ EPY++Q GF+QRTPRGR++ P+
Sbjct: 262 IDHKLLKNLIHTFRGGPVGLDTIAATVGEEPDTIEDVYEPYLMQIGFLQRTPRGRVVTPL 321

Query: 323 AWQHLGIDIPHR 334
            ++H  +++P +
Sbjct: 322 VYEHFKLEVPKQ 333


>gi|124006089|ref|ZP_01690925.1| holliday junction DNA helicase RuvB [Microscilla marina ATCC 23134]
 gi|123988266|gb|EAY27919.1| holliday junction DNA helicase RuvB [Microscilla marina ATCC 23134]
          Length = 345

 Score =  354 bits (908), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 176/313 (56%), Positives = 226/313 (72%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP   ++F+GQ +  +NLK+F++AAK R EALDHVL  GPPGLGKTTL+ ++A ELG  
Sbjct: 27  LRPLNFDDFSGQGKIVTNLKIFVQAAKQREEALDHVLLHGPPGLGKTTLSNIIANELGTE 86

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGPV+ K  DLA LLTNLE  DVLFIDEIHRL+ IVEE LY AMED+++D+M+  G
Sbjct: 87  IKITSGPVLDKPSDLAGLLTNLETNDVLFIDEIHRLNPIVEEYLYSAMEDYKIDIMLDSG 146

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSAR+++I L+ FTLI ATTR GLLT+PL+ RFGI  RL +Y+ + L TIV+R   + G 
Sbjct: 147 PSARTIQIALNPFTLIGATTRAGLLTSPLRARFGIKARLEYYDADLLSTIVRRSCAILGT 206

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  +A+ EIA RSRGTPRIA  LLRR RDFA+V    TIT EIA  AL  L +D+ G D
Sbjct: 207 PIEHDASYEIAFRSRGTPRIANNLLRRTRDFAQVKGDGTITLEIAKMALDALEVDQKGLD 266

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           ++D R LT I   F GGPVG+ TI+    E  + IE++ EP++I QGFI+RTPRGR    
Sbjct: 267 EMDNRILTTIIDKFRGGPVGLSTIATACGEEAETIEEVYEPFLIMQGFIKRTPRGREATE 326

Query: 322 IAWQHLGIDIPHR 334
            A+QHLG  +P++
Sbjct: 327 EAYQHLGKTLPNK 339


>gi|257063441|ref|YP_003143113.1| Holliday junction DNA helicase subunit RuvB [Slackia
           heliotrinireducens DSM 20476]
 gi|256791094|gb|ACV21764.1| Holliday junction DNA helicase subunit RuvB [Slackia
           heliotrinireducens DSM 20476]
          Length = 346

 Score =  354 bits (908), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 172/308 (55%), Positives = 228/308 (74%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L+++ GQ     +L + I+AAK R E +DHVLF GPPGLGKTTLA VVA ELG N
Sbjct: 36  LRPKHLDDYIGQTRVKDSLSILIQAAKQRGECMDHVLFSGPPGLGKTTLATVVANELGAN 95

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R+TSGP IA+ GDLAA+LTNLED DVLFIDEIHRL+  VEE+LYPA+ED+ LD++VG+G
Sbjct: 96  IRTTSGPAIARTGDLAAILTNLEDGDVLFIDEIHRLNRQVEEVLYPALEDYVLDIVVGKG 155

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS++++L +FTL+ ATTR GLLT PL+DRFGI  RL++Y  E+L  IV+R A +  +
Sbjct: 156 PAARSIRLDLPKFTLVGATTRTGLLTGPLRDRFGIVFRLDYYTPEELAGIVKRSAGILDV 215

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
           A+ +E A EIA RSRGTPR+A R+L+RVRD+A+V     I  + A  AL    +D +G D
Sbjct: 216 AIDEEGALEIARRSRGTPRLANRMLKRVRDWAQVRGTGDIDEDTAAQALSFFEVDSLGLD 275

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            LD + L ++   F G PVG+ T+++ LSE  D +ED+ EPY+IQQG I RTP+GR    
Sbjct: 276 ALDNKILELLCVGFDGRPVGLSTLASALSEDPDTVEDVYEPYLIQQGLIMRTPKGRQATD 335

Query: 322 IAWQHLGI 329
            A++H+GI
Sbjct: 336 RAFEHIGI 343


>gi|154149662|ref|YP_001403280.1| Holliday junction DNA helicase RuvB [Candidatus Methanoregula
           boonei 6A8]
 gi|166231501|sp|A7I4H6|RUVB_METB6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|153998214|gb|ABS54637.1| Holliday junction DNA helicase RuvB [Methanoregula boonei 6A8]
          Length = 335

 Score =  354 bits (908), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 184/326 (56%), Positives = 239/326 (73%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           E ++S     +DAD   LRP TLE F GQ  A + L++ I AA+ R E +DH+LF GPPG
Sbjct: 3   ERVISPEPVPDDADEITLRPSTLEAFVGQEPAKNALRIAIAAARKRGEPIDHILFAGPPG 62

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLA ++ARE+G   R+T+GPV+ K GD+AA+ T L++ DVLFIDEIHR++ +VEEI
Sbjct: 63  LGKTTLAHIIAREMGAAIRTTTGPVLEKTGDMAAIATALQNGDVLFIDEIHRMNPVVEEI 122

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPAMEDF +D+M+GEGPSARS+K+ L RFTLI ATTR GLL++P +DRFG+ IRLN Y 
Sbjct: 123 LYPAMEDFFIDVMIGEGPSARSIKLTLERFTLIGATTRQGLLSSPFRDRFGLLIRLNLYS 182

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            EDL+ IV R A++  + +T + A  IA RSRGTPRIA RLLRRVRD+A V    TIT E
Sbjct: 183 PEDLEKIVTRSAEILRIPITPKGAAVIASRSRGTPRIANRLLRRVRDYAVVEGDGTITAE 242

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           IA A L  L ID++G D +D R L++IA +FGGGPVG +TI+  + E    IE++ EPY+
Sbjct: 243 IAGAGLALLQIDELGLDDIDRRILSVIAGDFGGGPVGAKTIAISVGEEVRTIEEVYEPYL 302

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGID 330
           IQ GF++RTP+GR   P A  HL ++
Sbjct: 303 IQIGFVKRTPQGRETTPAALAHLKLN 328


>gi|332876892|ref|ZP_08444646.1| Holliday junction DNA helicase RuvB [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332685175|gb|EGJ58018.1| Holliday junction DNA helicase RuvB [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 340

 Score =  354 bits (908), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 177/319 (55%), Positives = 229/319 (71%), Gaps = 1/319 (0%)

Query: 11  NVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           N S ++ DI   LRP + ++F GQ     NLKVF++AA  R EALDH LF GPPGLGKTT
Sbjct: 11  NYSAQELDIERALRPLSFDDFAGQEAVLENLKVFVKAANMRNEALDHTLFHGPPGLGKTT 70

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           LA ++A ELGV  + TSGPV+ K GDLA LLTNL++RDVLFIDEIHRLS +VEE LY AM
Sbjct: 71  LAHILANELGVGIKITSGPVLDKPGDLAGLLTNLQERDVLFIDEIHRLSPVVEEYLYSAM 130

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           ED+++D+M+  GP+AR+V+INL+ FTLI ATTR GLLT P++ RFGI  RL +Y  E L 
Sbjct: 131 EDYKIDIMIESGPNARTVQINLNPFTLIGATTRSGLLTAPMRARFGIQSRLQYYSTELLA 190

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            I+QR A +  + ++ EAA E+A RSRGTPRIA  LLRR+RDFA++     I  EI    
Sbjct: 191 DIIQRSASILKMPISMEAAIELASRSRGTPRIANALLRRIRDFAQIKGNGKIDIEITRFG 250

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           L  L +D  G D++D R L+ +   F GGPVGI T++  +SE  + IE++ EP++IQQGF
Sbjct: 251 LKALNVDAHGLDEMDNRILSTLIDKFKGGPVGITTLATAVSESAETIEEVYEPFLIQQGF 310

Query: 310 IQRTPRGRLLMPIAWQHLG 328
           I RTPRGR +  +A++HLG
Sbjct: 311 IVRTPRGREVTELAYKHLG 329


>gi|225025939|ref|ZP_03715131.1| hypothetical protein EUBHAL_00175 [Eubacterium hallii DSM 3353]
 gi|224956725|gb|EEG37934.1| hypothetical protein EUBHAL_00175 [Eubacterium hallii DSM 3353]
          Length = 334

 Score =  354 bits (908), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 175/333 (52%), Positives = 234/333 (70%), Gaps = 3/333 (0%)

Query: 2   MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MDR  ++S  + +ED  +   LRP+ L E+ GQ +   NL+VFIEAAK R E+LDHVL  
Sbjct: 1   MDR--MISTELMEEDIAVEGSLRPQNLSEYIGQEKVKKNLRVFIEAAKMRGESLDHVLLY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A E+  N + TSGP I K G++AA+L  L D DVLFIDEIHRL+  
Sbjct: 59  GPPGLGKTTLAGIIANEMDSNLKITSGPAIEKPGEIAAVLNGLSDGDVLFIDEIHRLNRQ 118

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDF +D+M+G+G SA+S+++ L  FTL+ ATTR G+LT PL+DRFG+  RL
Sbjct: 119 VEEVLYPAMEDFSIDIMIGKGASAKSIRLELPHFTLVGATTRAGMLTAPLRDRFGVVNRL 178

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  E+LK IV+R A+L G+ + +  A E+  RSRGTPR+A RLL+RVRDFA+V +   
Sbjct: 179 EFYTDEELKVIVERSAELLGVKIDEAGAMEVGKRSRGTPRLANRLLKRVRDFAQVRYDGM 238

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           IT E+A  AL  L +D MG D  D   L  +   F G PVG++T++A + E    IED+ 
Sbjct: 239 ITYEVAQTALNLLEVDSMGLDATDRNLLEAMITKFMGKPVGLDTLAAAIGEDSGTIEDVY 298

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EP++IQ+G I+RTPRGR L   A++H+G  +P 
Sbjct: 299 EPFLIQRGLIKRTPRGRALTAFAYEHMGYPVPE 331


>gi|281422347|ref|ZP_06253346.1| holliday junction DNA helicase RuvB [Prevotella copri DSM 18205]
 gi|281403578|gb|EFB34258.1| holliday junction DNA helicase RuvB [Prevotella copri DSM 18205]
          Length = 344

 Score =  354 bits (908), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 173/307 (56%), Positives = 225/307 (73%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP    +F+GQ     NL+VF+EAAK R E LDH L  GPPGLGKTTL+ ++A ELGV 
Sbjct: 23  LRPLKFSDFSGQNGVVENLEVFVEAAKYRGEPLDHTLLHGPPGLGKTTLSNIIANELGVG 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS +VEE LY AMED+++D+M+ +G
Sbjct: 83  FKITSGPVLDKPGDLAGILTSLEPNDVLFIDEIHRLSPVVEEYLYSAMEDYRIDIMIDKG 142

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSARS++I+L+ FTL+ ATTR GLLT PL+ RFGI + L +Y+   L+ I++R A L  +
Sbjct: 143 PSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGINLHLEYYDPATLQKIIKRSAMLLKV 202

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + DEAA EI+ RSRGTPRIA  LLRRVRDFA+V    TIT  IA  AL  L ID+ G D
Sbjct: 203 PIEDEAAVEISRRSRGTPRIANSLLRRVRDFAQVKGNGTITYGIAQMALKALNIDQYGLD 262

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           ++D + LT I   F GGPVG+ TI+  + E    +E++ EP++I +GFI+RTPRGR+  P
Sbjct: 263 EIDNKILTTIIDKFRGGPVGVSTIATAIGEDGGTVEEVYEPFLIMEGFIKRTPRGRMATP 322

Query: 322 IAWQHLG 328
           +A++HLG
Sbjct: 323 LAYEHLG 329


>gi|312877190|ref|ZP_07737159.1| Holliday junction DNA helicase RuvB [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311795999|gb|EFR12359.1| Holliday junction DNA helicase RuvB [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 338

 Score =  354 bits (908), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 170/323 (52%), Positives = 228/323 (70%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           E LL    S ED     LRP+TLE++ GQ +    +K+FIEAAK R E LDHVL  GPPG
Sbjct: 2   ERLLDNKFSVEDVHEESLRPKTLEDYIGQQKVKEKIKIFIEAAKKRKEPLDHVLLYGPPG 61

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLA ++A E+GV+ + TSGP I +AGDL A+LTN+ + ++LFIDEIHRL+  +EE+
Sbjct: 62  LGKTTLANIIANEMGVDIKVTSGPAIERAGDLVAILTNIGENNILFIDEIHRLNRTIEEV 121

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPAMED ++D+M+G+GPSA+++++ L  FTLI ATTR GLL++PL+DRFGI  RL++Y 
Sbjct: 122 LYPAMEDKKVDIMIGKGPSAKTIRLTLPPFTLIGATTRAGLLSSPLRDRFGIIERLDYYT 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +E+L  IV R A +    +  EA  EIA RSRGTPR+A RLLRR+RD+A V H  +IT E
Sbjct: 182 VEELSQIVMRSASILKCDIEKEACIEIAKRSRGTPRVANRLLRRLRDYAMVKHTGSITYE 241

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +A + L    +D+ G D +D   L  I   FGGGPVG+ TI+A + E    IED+ EPY+
Sbjct: 242 VAKSGLEMFEVDEYGLDLVDRNILEAIVYKFGGGPVGLSTIAAAIGEDEGTIEDIYEPYL 301

Query: 305 IQQGFIQRTPRGRLLMPIAWQHL 327
           IQ+GF+ +T RGR+    A  H+
Sbjct: 302 IQEGFLVKTARGRVATQKAINHI 324


>gi|222474858|ref|YP_002563273.1| Holliday junction DNA helicase (ruvB) [Anaplasma marginale str.
           Florida]
 gi|254994713|ref|ZP_05276903.1| Holliday junction DNA helicase RuvB [Anaplasma marginale str.
           Mississippi]
 gi|255002827|ref|ZP_05277791.1| Holliday junction DNA helicase RuvB [Anaplasma marginale str.
           Puerto Rico]
 gi|255003959|ref|ZP_05278760.1| Holliday junction DNA helicase RuvB [Anaplasma marginale str.
           Virginia]
 gi|269959098|ref|YP_003328887.1| Holliday junction DNA helicase B [Anaplasma centrale str. Israel]
 gi|254767405|sp|B9KHQ5|RUVB_ANAMF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|222418994|gb|ACM49017.1| Holliday junction DNA helicase (ruvB) [Anaplasma marginale str.
           Florida]
 gi|269848929|gb|ACZ49573.1| Holliday junction DNA helicase B [Anaplasma centrale str. Israel]
          Length = 331

 Score =  354 bits (908), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 180/327 (55%), Positives = 233/327 (71%), Gaps = 3/327 (0%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M  + L       ED     LRP  +EEF GQ E   NLKVFI++A  R E +DHVL  G
Sbjct: 1   MSNDTLHKYEALPEDHRNVALRPCLIEEFVGQTEVIKNLKVFIQSAYERREPMDHVLLYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A+EL VNFRST+GP+++KAGDLAA+LTNL+  DVLFIDEIHRL+  +
Sbjct: 61  PPGLGKTTLAHIIAKELKVNFRSTAGPLLSKAGDLAAILTNLQPMDVLFIDEIHRLNRNI 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMED+ LD++VGEG  AR++KI++  FTLI ATTR GL++NPL+DRFGIP+ L 
Sbjct: 121 EEVLYSAMEDYCLDIVVGEGCGARTLKIDIPAFTLIGATTRFGLISNPLRDRFGIPLHLE 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK-T 240
           FY +++L  +++R A +   ++ D  A EIA RSRGTPRIA RL RRVRDF E      T
Sbjct: 181 FYSVDELVLVIKRAAGVICTSIDDSGAREIASRSRGTPRIALRLFRRVRDFLEFERKHGT 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I    A++AL RL ID  GFD++DL+YL  +      GPVGI+TI++ LSE    IE+ I
Sbjct: 241 IDGNFANSALFRLGIDGAGFDKMDLKYLKFVFE--AKGPVGIDTIASALSEDVGNIEETI 298

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHL 327
           EPY+I+  FIQRTPRGR+L    +++L
Sbjct: 299 EPYLIKTCFIQRTPRGRVLTQKGFEYL 325


>gi|148543763|ref|YP_001271133.1| Holliday junction DNA helicase RuvB [Lactobacillus reuteri DSM
           20016]
 gi|184153169|ref|YP_001841510.1| Holliday junction DNA helicase RuvB [Lactobacillus reuteri JCM
           1112]
 gi|227363257|ref|ZP_03847389.1| Holliday junction DNA helicase B [Lactobacillus reuteri MM2-3]
 gi|325682135|ref|ZP_08161653.1| crossover junction ATP-dependent DNA helicase RuvB [Lactobacillus
           reuteri MM4-1A]
 gi|172048235|sp|A5VIX2|RUVB_LACRD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|229890172|sp|B2G6E8|RUVB_LACRJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|148530797|gb|ABQ82796.1| Holliday junction DNA helicase subunit RuvB [Lactobacillus reuteri
           DSM 20016]
 gi|183224513|dbj|BAG25030.1| holliday junction DNA helicase RuvB [Lactobacillus reuteri JCM
           1112]
 gi|227071713|gb|EEI10004.1| Holliday junction DNA helicase B [Lactobacillus reuteri MM2-3]
 gi|324978779|gb|EGC15728.1| crossover junction ATP-dependent DNA helicase RuvB [Lactobacillus
           reuteri MM4-1A]
          Length = 338

 Score =  353 bits (907), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 174/334 (52%), Positives = 240/334 (71%), Gaps = 2/334 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M +  G+LS + S +E++ + + LRP+ L E+ GQ +    L+V+I+AA++R EALDHVL
Sbjct: 1   MENDHGILSDHPSGEEESQVEITLRPQKLREYIGQPKIKHELEVYIKAAQSREEALDHVL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA V+A E+GVN R+TSGP I K GDL ALL  L+  DVLF+DEIHRL 
Sbjct: 61  LYGPPGLGKTTLAMVIANEMGVNIRTTSGPAIEKPGDLVALLNELKPGDVLFVDEIHRLP 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            +VEE+LY AMED+ +D+++GEGP+A  V   L  FTLI ATTR G+L+ PL+DRFGI  
Sbjct: 121 KVVEEMLYSAMEDYYIDIVIGEGPTAHPVHFPLPPFTLIGATTRAGMLSAPLRDRFGIVE 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
            +N+Y  ++L  I+ R AK+   ++ DE A E+++RSRGTPRIA RLL+RVRDFA+VA  
Sbjct: 181 HMNYYTQDELTKIIFRSAKIFHTSIQDEGAHELSLRSRGTPRIANRLLKRVRDFAQVAGK 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
           ++I   I   AL  L +D  G D++D + L  +   + GGPVG++TI+A + E  + IE+
Sbjct: 241 QSIDSAIVKQALSLLQVDDRGLDEIDRKMLLTMINFYHGGPVGLKTIAANIGEETNTIEE 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           + EPY++Q GFI RTPRGRL+ P A++HLGI+ P
Sbjct: 301 MYEPYLLQIGFISRTPRGRLVTPTAYEHLGIEYP 334


>gi|110802636|ref|YP_699224.1| Holliday junction DNA helicase RuvB [Clostridium perfringens SM101]
 gi|123341652|sp|Q0SRN3|RUVB_CLOPS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|110683137|gb|ABG86507.1| Holliday junction DNA helicase RuvB [Clostridium perfringens SM101]
          Length = 346

 Score =  353 bits (907), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 170/307 (55%), Positives = 227/307 (73%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP  + E+ GQ +    L +FI+AA+ R EALDHV+  GPPGLGKTTLA ++A E+G N
Sbjct: 21  LRPEKINEYIGQDKVKERLNIFIKAAQRRGEALDHVILYGPPGLGKTTLANIIANEMGGN 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGP I +AGDLAA+LT L   DVLFIDEIHRL+  VEEILYPAMED+ LD+++G+G
Sbjct: 81  LKITSGPAIERAGDLAAILTTLNTNDVLFIDEIHRLNRSVEEILYPAMEDYVLDIIIGKG 140

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            +++S++++L +FTLI ATTR+G+L++PL+DRFG+   + +Y  E LK I+ R A++ G 
Sbjct: 141 AASKSIRLDLPKFTLIGATTRIGMLSSPLRDRFGVLCSMEYYTDEQLKEIIIRSAEILGC 200

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T+E A EIA RSRGTPRIA RLL+RVRDFAEV +   IT E A  +L  L +D  GFD
Sbjct: 201 HITEEGAFEIAKRSRGTPRIANRLLKRVRDFAEVLYDNEITEEAAKKSLEILEVDGEGFD 260

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           ++D + L  I  NF GGPVGIET++  + E  D IED+ EPY++Q+GFI RTPRGR+   
Sbjct: 261 RIDNKILEAIIDNFNGGPVGIETLAYFVGEELDTIEDVYEPYLLQKGFIVRTPRGRMATD 320

Query: 322 IAWQHLG 328
            A++HLG
Sbjct: 321 KAYKHLG 327


>gi|198282211|ref|YP_002218532.1| Holliday junction DNA helicase RuvB [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218666868|ref|YP_002424576.1| Holliday junction DNA helicase RuvB [Acidithiobacillus ferrooxidans
           ATCC 23270]
 gi|198246732|gb|ACH82325.1| Holliday junction DNA helicase RuvB [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218519081|gb|ACK79667.1| Holliday junction DNA helicase RuvB [Acidithiobacillus ferrooxidans
           ATCC 23270]
          Length = 340

 Score =  353 bits (907), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 178/331 (53%), Positives = 236/331 (71%), Gaps = 1/331 (0%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MDR G L+   +  DA    LRPR L E+ GQ +   +L ++I+AA+ R+EALDHVL  G
Sbjct: 1   MDR-GPLNPQEAHNDAVDHALRPRRLAEYLGQAKLRESLGLYIDAARGRSEALDHVLLFG 59

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A+E+G   + TSGPV+ K GDLAA+LTNL+  DVLF+DEIHRLS +V
Sbjct: 60  PPGLGKTTLAHIIAQEMGAGLKVTSGPVLDKPGDLAAILTNLQPHDVLFVDEIHRLSPVV 119

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILYPA+ED++LD+++GEGP+ARS+KI+L  FTLI ATTR GLLT+PL+DRFGI   L 
Sbjct: 120 EEILYPALEDYELDILIGEGPAARSIKISLPPFTLIGATTRAGLLTSPLRDRFGISFHLE 179

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY   +L  IV R A++ G     E A EIA R+RGTPRIA RLLRRVRD+A+V     I
Sbjct: 180 FYSDAELTQIVTRSARILGTPQALEGAQEIARRARGTPRIANRLLRRVRDYAQVRGNGEI 239

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
               A AAL  + +D+ GFD  D + L  +   F GGPVG+E+++A + E R  IED++E
Sbjct: 240 DMATAQAALTLMEVDRHGFDGQDRKLLQAVISRFAGGPVGVESLAAAIGEERGTIEDVLE 299

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           P++IQ+G++ RTPRGR    +++  LG+  P
Sbjct: 300 PFLIQRGYLIRTPRGRCATELSYLALGLPAP 330


>gi|327312927|ref|YP_004328364.1| Holliday junction DNA helicase RuvB [Prevotella denticola F0289]
 gi|326945744|gb|AEA21629.1| Holliday junction DNA helicase RuvB [Prevotella denticola F0289]
          Length = 344

 Score =  353 bits (907), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 173/307 (56%), Positives = 224/307 (72%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP    +F+GQ +   NL VF+EAAK R E LDH L  GPPGLGKTTL+ ++A ELGV 
Sbjct: 23  LRPLRFSDFSGQQKVVENLSVFVEAAKYRGEPLDHTLLHGPPGLGKTTLSNIIANELGVG 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS +VEE LY AMED+++D+M+ +G
Sbjct: 83  FKITSGPVLDKPGDLAGILTSLEPNDVLFIDEIHRLSPVVEEYLYSAMEDYRIDIMIDKG 142

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSARS++I+L+ FTL+ ATTR GLLT PL+ RFGI + L +Y+ E LK I++R A+L  +
Sbjct: 143 PSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGINLHLEYYDPETLKRIIKRSAQLLKV 202

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + D+AA EIA RSRGTPRI   LLRRVRDFA+V    TIT EIA  +L  L IDK G D
Sbjct: 203 PIVDDAAIEIARRSRGTPRICNSLLRRVRDFAQVKGNGTITLEIASLSLQSLNIDKYGLD 262

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           ++D + L  I   F GGPVG+ TI+  + E    +E++ EP++I +GFI+RTPRGR+   
Sbjct: 263 EIDNKILLTIIDKFRGGPVGVSTIATAIGEDSGTVEEVYEPFLIMEGFIKRTPRGRVATQ 322

Query: 322 IAWQHLG 328
           +A+ HLG
Sbjct: 323 LAYSHLG 329


>gi|146299402|ref|YP_001193993.1| Holliday junction DNA helicase B [Flavobacterium johnsoniae UW101]
 gi|189046032|sp|A5FJE5|RUVB_FLAJO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|146153820|gb|ABQ04674.1| Holliday junction DNA helicase RuvB [Flavobacterium johnsoniae
           UW101]
          Length = 340

 Score =  353 bits (907), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 179/321 (55%), Positives = 230/321 (71%), Gaps = 1/321 (0%)

Query: 9   SRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           ++  + E+ D+   LRP + ++F GQ +   NLKVF+ AA  R EALDH LF GPPGLGK
Sbjct: 9   TKGYNSEELDLEKRLRPLSFDDFAGQDQVLENLKVFVAAANQRGEALDHALFHGPPGLGK 68

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127
           TTLA ++A EL V  + TSGPV+ K GDLA LLTNL++RDVLFIDEIHRLS IVEE LY 
Sbjct: 69  TTLANILANELEVGIKITSGPVLDKPGDLAGLLTNLDERDVLFIDEIHRLSPIVEEYLYS 128

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           AMEDF++D+M+  GP+AR+V+INL+ FTLI ATTR GLLT P++ RFGI  RL +Y  E 
Sbjct: 129 AMEDFKIDIMIESGPNARTVQINLNPFTLIGATTRSGLLTAPMRARFGISSRLQYYSTEL 188

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           L TIV+R A +  + +  EAA EIA RSRGTPRIA  LLRRVRDFA++    TI  EI+ 
Sbjct: 189 LTTIVERSAGILKMPIDLEAAIEIAGRSRGTPRIANALLRRVRDFAQIKGNGTIDLEISK 248

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
            AL  L +D  G D++D + L  I   F GGPVG+ T++  +SE  + IE++ EP++IQ+
Sbjct: 249 YALKALNVDAHGLDEMDNKILLTIINKFKGGPVGLSTLATAVSESSETIEEVYEPFLIQE 308

Query: 308 GFIQRTPRGRLLMPIAWQHLG 328
           GFI RTPRGR +   A++HLG
Sbjct: 309 GFIMRTPRGREVTEKAYKHLG 329


>gi|282882987|ref|ZP_06291591.1| holliday junction DNA helicase RuvB [Peptoniphilus lacrimalis
           315-B]
 gi|281297194|gb|EFA89686.1| holliday junction DNA helicase RuvB [Peptoniphilus lacrimalis
           315-B]
          Length = 334

 Score =  353 bits (907), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 174/326 (53%), Positives = 232/326 (71%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           E ++  N S ED     LRP+ L ++ GQ +  + LK+FI+AAK R E LDH L  GPPG
Sbjct: 3   ERIIDANFSVEDKQEINLRPKWLLDYIGQDKVINKLKIFIKAAKNRKEPLDHTLLSGPPG 62

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLA ++A E+GVN + TSGP I + GDLA++LTNL++ DVLFIDEIHRL+  VEEI
Sbjct: 63  LGKTTLAGIIANEMGVNIKVTSGPAIERQGDLASILTNLKEDDVLFIDEIHRLNKSVEEI 122

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPAMED+ LD+++G+GPSARS++++L++FTLI ATTR G+LT+PL+DRFG+ + +  Y 
Sbjct: 123 LYPAMEDYALDIIIGKGPSARSIRLDLAKFTLIGATTRSGMLTSPLRDRFGVLLNMELYS 182

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           I+ L  IV   A++  + +  E A EIA RSRGTPRIA RLL+RVRD+AEV     IT +
Sbjct: 183 IDALTKIVISSAEILNIPIEKEGALEIAKRSRGTPRIANRLLKRVRDYAEVVERGVITEK 242

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +A   L  L IDK G D +D + +  +  NF G PVGI+ ISA + E R  +ED+ EPY+
Sbjct: 243 VAVKGLNLLEIDKYGLDNIDRKIILTMIENFVGRPVGIDAISASIGEDRITVEDVYEPYL 302

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGID 330
           +Q GFI RTPRGRL    A+ H G++
Sbjct: 303 MQIGFIVRTPRGRLATKKAYDHFGLE 328


>gi|56416489|ref|YP_153563.1| Holliday junction DNA helicase B [Anaplasma marginale str. St.
           Maries]
 gi|81821306|sp|Q5PBM1|RUVB_ANAMM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|56387721|gb|AAV86308.1| holliday junction DNA helicase [Anaplasma marginale str. St.
           Maries]
          Length = 331

 Score =  353 bits (907), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 180/327 (55%), Positives = 233/327 (71%), Gaps = 3/327 (0%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M  + L       ED     LRP  +EEF GQ E   NLKVFI++A  R E +DHVL  G
Sbjct: 1   MSSDTLHKYEALPEDHRNVALRPCLIEEFVGQTEVIKNLKVFIQSAYERREPMDHVLLYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A+EL VNFRST+GP+++KAGDLAA+LTNL+  DVLFIDEIHRL+  +
Sbjct: 61  PPGLGKTTLAHIIAKELKVNFRSTAGPLLSKAGDLAAILTNLQPMDVLFIDEIHRLNRNI 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMED+ LD++VGEG  AR++KI++  FTLI ATTR GL++NPL+DRFGIP+ L 
Sbjct: 121 EEVLYSAMEDYCLDIVVGEGCGARTLKIDIPAFTLIGATTRFGLISNPLRDRFGIPLHLE 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK-T 240
           FY +++L  +++R A +   ++ D  A EIA RSRGTPRIA RL RRVRDF E      T
Sbjct: 181 FYSVDELVLVIKRAAGVICTSIDDSGAREIASRSRGTPRIALRLFRRVRDFLEFERKHGT 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I    A++AL RL ID  GFD++DL+YL  +      GPVGI+TI++ LSE    IE+ I
Sbjct: 241 IDGNFANSALFRLGIDGAGFDKMDLKYLKFVFE--AKGPVGIDTIASALSEDVGNIEETI 298

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHL 327
           EPY+I+  FIQRTPRGR+L    +++L
Sbjct: 299 EPYLIKTCFIQRTPRGRVLTQKGFEYL 325


>gi|110799933|ref|YP_696627.1| Holliday junction DNA helicase RuvB [Clostridium perfringens ATCC
           13124]
 gi|168204869|ref|ZP_02630874.1| holliday junction DNA helicase RuvB [Clostridium perfringens E str.
           JGS1987]
 gi|168208648|ref|ZP_02634273.1| holliday junction DNA helicase RuvB [Clostridium perfringens B str.
           ATCC 3626]
 gi|168214132|ref|ZP_02639757.1| holliday junction DNA helicase RuvB [Clostridium perfringens CPE
           str. F4969]
 gi|168215573|ref|ZP_02641198.1| holliday junction DNA helicase RuvB [Clostridium perfringens NCTC
           8239]
 gi|169343509|ref|ZP_02864508.1| holliday junction DNA helicase RuvB [Clostridium perfringens C str.
           JGS1495]
 gi|182624456|ref|ZP_02952240.1| holliday junction DNA helicase RuvB [Clostridium perfringens D str.
           JGS1721]
 gi|123344604|sp|Q0TP13|RUVB_CLOP1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|110674580|gb|ABG83567.1| Holliday junction DNA helicase RuvB [Clostridium perfringens ATCC
           13124]
 gi|169298069|gb|EDS80159.1| holliday junction DNA helicase RuvB [Clostridium perfringens C str.
           JGS1495]
 gi|170663662|gb|EDT16345.1| holliday junction DNA helicase RuvB [Clostridium perfringens E str.
           JGS1987]
 gi|170712997|gb|EDT25179.1| holliday junction DNA helicase RuvB [Clostridium perfringens B str.
           ATCC 3626]
 gi|170714356|gb|EDT26538.1| holliday junction DNA helicase RuvB [Clostridium perfringens CPE
           str. F4969]
 gi|177910459|gb|EDT72836.1| holliday junction DNA helicase RuvB [Clostridium perfringens D str.
           JGS1721]
 gi|182382068|gb|EDT79547.1| holliday junction DNA helicase RuvB [Clostridium perfringens NCTC
           8239]
          Length = 346

 Score =  353 bits (907), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 170/307 (55%), Positives = 227/307 (73%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP  + E+ GQ +    L +FI+AA+ R EALDHV+  GPPGLGKTTLA ++A E+G N
Sbjct: 21  LRPEKINEYIGQDKVKERLNIFIKAAQRREEALDHVILYGPPGLGKTTLANIIANEMGGN 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGP I +AGDLAA+LT L   DVLFIDEIHRL+  VEEILYPAMED+ LD+++G+G
Sbjct: 81  LKITSGPAIERAGDLAAILTTLNTNDVLFIDEIHRLNRSVEEILYPAMEDYVLDIIIGKG 140

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            +++S++++L +FTLI ATTR+G+L++PL+DRFG+   + +Y  E LK I+ R A++ G 
Sbjct: 141 AASKSIRLDLPKFTLIGATTRIGMLSSPLRDRFGVLCSMEYYTDEQLKEIIIRSAEILGC 200

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T+E A EIA RSRGTPRIA RLL+RVRDFAEV +   IT E A  +L  L +D  GFD
Sbjct: 201 HITEEGAFEIAKRSRGTPRIANRLLKRVRDFAEVLYDNEITEEAAKKSLEILEVDGEGFD 260

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           ++D + L  I  NF GGPVGIET++  + E  D IED+ EPY++Q+GFI RTPRGR+   
Sbjct: 261 RIDNKILEAIIDNFNGGPVGIETLAYFVGEELDTIEDVYEPYLLQKGFIVRTPRGRMATD 320

Query: 322 IAWQHLG 328
            A++HLG
Sbjct: 321 KAYKHLG 327


>gi|325859879|ref|ZP_08173009.1| Holliday junction DNA helicase RuvB [Prevotella denticola CRIS
           18C-A]
 gi|325482805|gb|EGC85808.1| Holliday junction DNA helicase RuvB [Prevotella denticola CRIS
           18C-A]
          Length = 344

 Score =  353 bits (907), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 173/307 (56%), Positives = 224/307 (72%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP    +F+GQ +   NL VF+EAAK R E LDH L  GPPGLGKTTL+ ++A ELGV 
Sbjct: 23  LRPLRFSDFSGQQKVVENLSVFVEAAKYRGEPLDHTLLHGPPGLGKTTLSNIIANELGVG 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS +VEE LY AMED+++D+M+ +G
Sbjct: 83  FKITSGPVLDKPGDLAGILTSLEPNDVLFIDEIHRLSPVVEEYLYSAMEDYRIDIMIDKG 142

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSARS++I+L+ FTL+ ATTR GLLT PL+ RFGI + L +Y+ E LK I++R A+L  +
Sbjct: 143 PSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGINLHLEYYDPETLKRIIKRSAQLLKV 202

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + D+AA EIA RSRGTPRI   LLRRVRDFA+V    TIT EIA  +L  L IDK G D
Sbjct: 203 PIVDDAAIEIARRSRGTPRICNSLLRRVRDFAQVKGNGTITPEIASLSLQSLNIDKYGLD 262

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           ++D + L  I   F GGPVG+ TI+  + E    +E++ EP++I +GFI+RTPRGR+   
Sbjct: 263 EIDNKILLTIIDKFRGGPVGVSTIATAIGEDSGTVEEVYEPFLIMEGFIKRTPRGRVATQ 322

Query: 322 IAWQHLG 328
           +A+ HLG
Sbjct: 323 LAYSHLG 329


>gi|323342038|ref|ZP_08082271.1| crossover junction ATP-dependent DNA helicase RuvB [Erysipelothrix
           rhusiopathiae ATCC 19414]
 gi|322464463|gb|EFY09656.1| crossover junction ATP-dependent DNA helicase RuvB [Erysipelothrix
           rhusiopathiae ATCC 19414]
          Length = 336

 Score =  353 bits (907), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 179/334 (53%), Positives = 233/334 (69%), Gaps = 5/334 (1%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           +M  E +LS    +E      LRP+TL  + GQ     NLK+FIEAAK+R EALDH+LF 
Sbjct: 5   LMSGEAILSGQDYEES-----LRPQTLSAYVGQEGLKENLKIFIEAAKSRNEALDHLLFY 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTT+A V+A E+    + TSGP I ++GDLAA+L++LE  DVLFIDEIHR+   
Sbjct: 60  GPPGLGKTTIAHVIANEMQTGIKVTSGPSIERSGDLAAILSSLEPGDVLFIDEIHRMPKA 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDF LDL+VG+  S RS++I+L  FTLI ATTR G L++PL+DRFGI  +L
Sbjct: 120 VEEVLYPAMEDFTLDLVVGKDSSTRSIQIDLPPFTLIGATTRAGDLSSPLRDRFGIISKL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y  ++L+TIV R +++    +  E   EIA RSRGTPRIA RL RRVRDFA+V +   
Sbjct: 180 EYYSQDELETIVSRTSRVLNTVIDREGVSEIAKRSRGTPRIANRLFRRVRDFAQVLNDNV 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +   I   AL +L +D +G D +DLRYL  I   F GGPVGIE I+A +SE    +ED+ 
Sbjct: 240 VDISITKLALDKLKVDHLGLDDVDLRYLRGIIERFDGGPVGIEAIAASISEETMTLEDVY 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           EPY++Q GFI RTPRGR++   A++HL ID+  R
Sbjct: 300 EPYLLQLGFINRTPRGRVVTTKAYEHLKIDVNQR 333


>gi|313904086|ref|ZP_07837466.1| Holliday junction DNA helicase RuvB [Eubacterium cellulosolvens 6]
 gi|313471235|gb|EFR66557.1| Holliday junction DNA helicase RuvB [Eubacterium cellulosolvens 6]
          Length = 330

 Score =  353 bits (906), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 170/326 (52%), Positives = 236/326 (72%), Gaps = 1/326 (0%)

Query: 7   LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           ++   V QED  +   LRP+TL+E+ GQ +A +NL+V+I+AAK R + LDHVLF GPPGL
Sbjct: 5   IIQTEVQQEDEPVEKSLRPQTLDEYIGQEKAKNNLRVYIQAAKQRGDVLDHVLFYGPPGL 64

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLA ++A E+G + + TSGP I K G++AA+L NL++ DVLF+DEIHRL+  VEE+L
Sbjct: 65  GKTTLAGIIANEMGTHMKVTSGPAIEKPGEMAAILNNLQEGDVLFVDEIHRLNRQVEEVL 124

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           YPAMED+ +D+M+G+G SARS+++ L +FTL+ ATTR GLLT PL+DRFG+   + FY  
Sbjct: 125 YPAMEDYAIDIMIGKGASARSIRLELPKFTLVGATTRAGLLTAPLRDRFGVIEHMEFYTT 184

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           E+L  IV+  A++  + +  + A E+A RSRGTPR++ RLLRRVRDFA V +   ITRE+
Sbjct: 185 EELTEIVEHSARVLDVEIDRDGAVEMARRSRGTPRLSNRLLRRVRDFAMVQYDGRITREV 244

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           A  AL  L +DK G DQ D R L  I   F GGPVG++T++A + +    IED+ EPY+I
Sbjct: 245 ARTALDLLQVDKFGLDQTDRRILLTIIEKFQGGPVGLDTLAAAIGDDSGTIEDVYEPYLI 304

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDI 331
           + GFI RT  GR+   +A++HLG+ +
Sbjct: 305 KNGFINRTHSGRVATELAYRHLGLQM 330


>gi|311031508|ref|ZP_07709598.1| Holliday junction DNA helicase RuvB [Bacillus sp. m3-13]
          Length = 337

 Score =  353 bits (906), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 174/334 (52%), Positives = 244/334 (73%), Gaps = 3/334 (0%)

Query: 1   MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M DR  ++S++ + E+  +   LRP+TL+++ GQ +   NL+VFI+AAK R E LDHVL 
Sbjct: 1   MDDR--MVSQDATLEEHSLEYSLRPQTLQQYIGQDKVKENLEVFIQAAKMRQETLDHVLL 58

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A E+GV  R+T+GP I + GDLAA+L+ LE  DVLFIDEIHRL  
Sbjct: 59  YGPPGLGKTTLAAIIANEMGVQLRTTAGPAIERPGDLAAILSALEPGDVLFIDEIHRLHR 118

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            +EE+LYPAMED+ LD+++G+GP+++SV+++L  FTL+ ATTRVGLLT PL+DRFG+  R
Sbjct: 119 SIEEVLYPAMEDYCLDIVIGKGPTSKSVRLDLPPFTLVGATTRVGLLTAPLRDRFGVLSR 178

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y  E L  I  R A++  + +  +AA EI+ R+RGTPRIA RLLRRVRDFA+V    
Sbjct: 179 LEYYNEEQLTEICLRTAQILEIGLELDAATEISRRARGTPRIANRLLRRVRDFAQVLGKD 238

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           TI+  +A  AL RL +DK+G D +D + L  I   F GGPVG++TI+A + E    IED+
Sbjct: 239 TISASLAKEALDRLQVDKLGLDHIDHKLLMGIIEKFRGGPVGVDTIAATIGEESHTIEDV 298

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            EPY++Q GF+QRTPRGR++  + ++H  +++P+
Sbjct: 299 YEPYLLQIGFLQRTPRGRVVTDLVYRHFNMEVPN 332


>gi|313677438|ref|YP_004055434.1| holliday junction DNA helicase ruvb [Marivirga tractuosa DSM 4126]
 gi|312944136|gb|ADR23326.1| Holliday junction DNA helicase RuvB [Marivirga tractuosa DSM 4126]
          Length = 342

 Score =  353 bits (906), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 177/329 (53%), Positives = 240/329 (72%), Gaps = 4/329 (1%)

Query: 4   REGLLS---RNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           RE  L+    N++ E+ +    LRP +  +FTGQ +   N++VF++AAK R+E LDHVL 
Sbjct: 2   REDFLTGDDENLNPEEKEFEKALRPLSFGDFTGQQKTVDNIQVFVQAAKKRSEPLDHVLL 61

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTL+ ++A ELG + + TSGPV+ K GDLA LLTNLE+ DVLFIDEIHRL+ 
Sbjct: 62  HGPPGLGKTTLSHIIANELGSSLKVTSGPVLDKPGDLAGLLTNLEEGDVLFIDEIHRLNA 121

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE LY AMEDF++D+M+  GP+ARSV+I+LS FTLI ATTR GLLT+PL+ RFGI  R
Sbjct: 122 VVEEYLYSAMEDFRIDIMLDSGPNARSVQISLSPFTLIGATTRSGLLTSPLRARFGINAR 181

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y+ E LK I++R A +    + ++AA EIA RSRGTPRI+  LLRR RDFAE+    
Sbjct: 182 LEYYDAELLKKIIKRSAAILNTPLQEDAAFEIARRSRGTPRISNTLLRRTRDFAEIKGDG 241

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           TIT+EIA+ AL  L +D+ G D++D R L+ I   F GGPVG+ TI+  + E  D IE++
Sbjct: 242 TITKEIAEFALNALDVDQHGLDEMDNRILSTIIEKFNGGPVGLGTIATAVGEEADTIEEV 301

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
            EP++I++G+++RT RGR    +A++HLG
Sbjct: 302 YEPFLIKEGYLKRTARGRQATELAYKHLG 330


>gi|313608654|gb|EFR84501.1| holliday junction DNA helicase RuvB [Listeria monocytogenes FSL
           F2-208]
          Length = 335

 Score =  353 bits (906), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 181/329 (55%), Positives = 232/329 (70%), Gaps = 1/329 (0%)

Query: 2   MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD   + S  V  E+    + LRP+TL ++ GQ +  +NL VFIEAA  R EALDHVL  
Sbjct: 1   MDERIISSETVDAEEVSFETSLRPQTLSQYIGQDKVKNNLTVFIEAATLRNEALDHVLLY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA V+A E+G   ++TSGP I + GDLA +LT+LE  DVLFIDEIHRLS  
Sbjct: 61  GPPGLGKTTLAMVIASEMGSQIKTTSGPAIERPGDLATILTSLEPGDVLFIDEIHRLSRA 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EEILYPAMED+ LD+++G GP+ARSV+++L  FTLI ATTR GLL+ PL+DRFG+   L
Sbjct: 121 IEEILYPAMEDYCLDIVIGTGPTARSVRLDLPPFTLIGATTRAGLLSAPLRDRFGVIDHL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  E L  IV R + +    + D  A EIA RSRGTPRIA RLL+RVRDFA+V    T
Sbjct: 181 EFYTEEQLTEIVLRTSNILNTKIDDLGAREIARRSRGTPRIANRLLKRVRDFAQVRGNGT 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +T ++A  AL  L +D  G D +D + L  I ++F GGPVG++TI+A + E R+ IED+ 
Sbjct: 241 VTEKLAKEALTLLQVDPRGLDTIDQKLLHTIIQSFRGGPVGLDTIAASIGEERETIEDMQ 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           EPY++Q GF+QRTPRGR+    A+ HLGI
Sbjct: 301 EPYLLQIGFLQRTPRGRIATETAYNHLGI 329


>gi|288801738|ref|ZP_06407180.1| holliday junction DNA helicase RuvB [Prevotella melaninogenica D18]
 gi|288335780|gb|EFC74213.1| holliday junction DNA helicase RuvB [Prevotella melaninogenica D18]
          Length = 344

 Score =  353 bits (905), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 174/307 (56%), Positives = 223/307 (72%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP    +F+GQ +   NL VF+EAAK R E LDH L  GPPGLGKTTL+ ++A ELGV 
Sbjct: 23  LRPLKFNDFSGQSKVVENLSVFVEAAKFRGEPLDHTLLHGPPGLGKTTLSNIIANELGVG 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS +VEE LY AMED+++D+M+ +G
Sbjct: 83  FKITSGPVLDKPGDLAGILTSLEPNDVLFIDEIHRLSPVVEEYLYSAMEDYRIDIMIDKG 142

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSARS++I+L+ FTL+ ATTR GLLT PL+ RFGI + L +Y+ E LK I++R A L  +
Sbjct: 143 PSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGINLHLEYYDPETLKRIIKRSATLLKV 202

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + DEAA EIA RSRGTPRI   LLRRVRDFA+V    TIT EIA  +L  L IDK G D
Sbjct: 203 PIVDEAADEIARRSRGTPRICNALLRRVRDFAQVKGNGTITPEIATMSLQSLNIDKYGLD 262

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           ++D + L  I   F GGPVG+ TI+  + E    +E++ EP++I +GFI+RTPRGR+   
Sbjct: 263 EIDNKILLTIIDKFRGGPVGVSTIATAIGEDSGTVEEVYEPFLIMEGFIKRTPRGRVATQ 322

Query: 322 IAWQHLG 328
           +A+ HLG
Sbjct: 323 LAYDHLG 329


>gi|299144016|ref|ZP_07037096.1| holliday junction DNA helicase RuvB [Peptoniphilus sp. oral taxon
           386 str. F0131]
 gi|298518501|gb|EFI42240.1| holliday junction DNA helicase RuvB [Peptoniphilus sp. oral taxon
           386 str. F0131]
          Length = 338

 Score =  353 bits (905), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 171/316 (54%), Positives = 227/316 (71%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           + ++ + LRPR L E+ GQ +    LK+FIEAAK R E LDH L  GPPGLGKTTL+ ++
Sbjct: 15  DSSNDNTLRPRWLSEYVGQDKVVEKLKIFIEAAKNRHEPLDHCLLNGPPGLGKTTLSYII 74

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A E+GVN + TSGP I + GDLA++L+NL + DVLFIDEIHR++  VEE+LYPAMED+ L
Sbjct: 75  ANEMGVNVKVTSGPAIERPGDLASILSNLNEDDVLFIDEIHRINRSVEEVLYPAMEDYAL 134

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D+++G+GPSARS++++L +FTLI ATTR G LT+PL+DRFG+ + L  Y+I+ L  I+ R
Sbjct: 135 DIIIGKGPSARSIRLDLEKFTLIGATTRSGQLTSPLRDRFGVILNLELYDIDSLTEIIMR 194

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A +  +A+  E A EIA RSRGTPRIA RLL+RVRD+AEV  +  IT+ +A   L  L 
Sbjct: 195 SADILNIAIEKEGAMEIACRSRGTPRIANRLLKRVRDYAEVKESGVITKRVAIKGLNLLD 254

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           IDK G D LD + +  +  NF G PVGI+ I+A + E R  IED  EPY++Q GFI RTP
Sbjct: 255 IDKFGLDGLDRKIIRTMIENFMGRPVGIDAIAASIGEERVTIEDAYEPYLMQIGFINRTP 314

Query: 315 RGRLLMPIAWQHLGID 330
           RGR+    A+ H GI+
Sbjct: 315 RGRVPTKAAYDHFGIE 330


>gi|289434812|ref|YP_003464684.1| holliday junction DNA helicase RuvB [Listeria seeligeri serovar
           1/2b str. SLCC3954]
 gi|289171056|emb|CBH27598.1| holliday junction DNA helicase RuvB [Listeria seeligeri serovar
           1/2b str. SLCC3954]
 gi|313633142|gb|EFS00031.1| holliday junction DNA helicase RuvB [Listeria seeligeri FSL N1-067]
 gi|313637716|gb|EFS03085.1| holliday junction DNA helicase RuvB [Listeria seeligeri FSL S4-171]
          Length = 335

 Score =  353 bits (905), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 180/329 (54%), Positives = 234/329 (71%), Gaps = 1/329 (0%)

Query: 2   MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD   + S  V  E+    + LRP+TL ++ GQ +  +NL VFIEAA  R EALDHVL  
Sbjct: 1   MDERIISSETVDSEEVSFETSLRPQTLSQYIGQDKVKNNLTVFIEAATLRNEALDHVLLY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA V+A E+G   ++TSGP I + GDLA +LT+L+  DVLFIDEIHRLS  
Sbjct: 61  GPPGLGKTTLAMVIASEMGSQIKTTSGPAIERPGDLATILTSLDPGDVLFIDEIHRLSRA 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EE+LYPAMED+ LD+++G GP+ARSV+++L  FTLI ATTR GLL+ PL+DRFG+   L
Sbjct: 121 IEEVLYPAMEDYCLDIVIGTGPTARSVRLDLPPFTLIGATTRAGLLSAPLRDRFGVIDHL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  E L  IV R A +    + D  A EIA RSRGTPRIA RLL+RVRDFA+V    T
Sbjct: 181 EFYTEEQLTEIVLRTANILDTKIDDLGAREIARRSRGTPRIANRLLKRVRDFAQVRGNGT 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +T ++A  AL  L +D  G D +D + L  I ++F GGPVG++TI+A + E R+ IED+ 
Sbjct: 241 VTEKLAKEALTLLQVDPRGLDTIDQKLLHTIIQSFRGGPVGLDTIAASIGEERETIEDMQ 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           EPY++Q GF+QR+PRGR+   IA++HLGI
Sbjct: 301 EPYLLQIGFLQRSPRGRIATEIAYKHLGI 329


>gi|332830260|gb|EGK02888.1| Holliday junction ATP-dependent DNA helicase ruvB [Dysgonomonas
           gadei ATCC BAA-286]
          Length = 340

 Score =  353 bits (905), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 173/307 (56%), Positives = 226/307 (73%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP T   F+GQ +   NL+VF+ AAK R E+LDH L  GPPGLGKTTL+ ++A ELGV 
Sbjct: 23  LRPLTFNSFSGQSKVVENLQVFVTAAKMRGESLDHTLLHGPPGLGKTTLSNIIANELGVG 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           F+ TSGPV+ K GDLA LLT+LE  DVLFIDEIHRLS +VEE LY AMED+++D+M+ +G
Sbjct: 83  FKITSGPVLDKPGDLAGLLTSLEPNDVLFIDEIHRLSPVVEEYLYSAMEDYRIDIMIDKG 142

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSARS++I+L+ FTLI ATTR GLLT+PL+ RFGI + L +Y+IE L  I+ R A +  +
Sbjct: 143 PSARSIQIDLNPFTLIGATTRSGLLTSPLRARFGINMHLEYYDIETLTNIILRSANILDV 202

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
             + EAA EIA RSRGTPRIA  LLRRVRDFA+V  +  I + IA  +L  L IDK G D
Sbjct: 203 PTSKEAAVEIASRSRGTPRIANALLRRVRDFAQVKGSGKIDKAIAAYSLEALNIDKYGLD 262

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           ++D + L ++   F GGPVGI TI+  L E    IE++ EP++I++GF++RTPRGR +  
Sbjct: 263 EIDNKILLILIDKFKGGPVGISTIATALGEDGGTIEEVYEPFLIKEGFMKRTPRGREVTE 322

Query: 322 IAWQHLG 328
           +A++HLG
Sbjct: 323 LAYKHLG 329


>gi|302344853|ref|YP_003813206.1| Holliday junction DNA helicase RuvB [Prevotella melaninogenica ATCC
           25845]
 gi|302149058|gb|ADK95320.1| Holliday junction DNA helicase RuvB [Prevotella melaninogenica ATCC
           25845]
          Length = 344

 Score =  353 bits (905), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 174/307 (56%), Positives = 223/307 (72%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP    +F+GQ +   NL VF+EAAK R E LDH L  GPPGLGKTTL+ ++A ELGV 
Sbjct: 23  LRPLKFNDFSGQSKVVENLSVFVEAAKFRGEPLDHTLLHGPPGLGKTTLSNIIANELGVG 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS +VEE LY AMED+++D+M+ +G
Sbjct: 83  FKITSGPVLDKPGDLAGILTSLEPNDVLFIDEIHRLSPVVEEYLYSAMEDYRIDIMIDKG 142

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSARS++I+L+ FTL+ ATTR GLLT PL+ RFGI + L +Y+ E LK I++R A L  +
Sbjct: 143 PSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGINLHLEYYDPETLKRIIKRSAALLKV 202

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + DEAA EIA RSRGTPRI   LLRRVRDFA+V    TIT EIA  +L  L IDK G D
Sbjct: 203 PIVDEAADEIARRSRGTPRICNALLRRVRDFAQVKGNGTITPEIATMSLQSLNIDKYGLD 262

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           ++D + L  I   F GGPVG+ TI+  + E    +E++ EP++I +GFI+RTPRGR+   
Sbjct: 263 EIDNKILLTIIDKFRGGPVGVSTIATAIGEDSGTVEEVYEPFLIMEGFIKRTPRGRVATQ 322

Query: 322 IAWQHLG 328
           +A+ HLG
Sbjct: 323 LAYDHLG 329


>gi|225568079|ref|ZP_03777104.1| hypothetical protein CLOHYLEM_04152 [Clostridium hylemonae DSM
           15053]
 gi|225163032|gb|EEG75651.1| hypothetical protein CLOHYLEM_04152 [Clostridium hylemonae DSM
           15053]
          Length = 335

 Score =  353 bits (905), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 173/321 (53%), Positives = 236/321 (73%), Gaps = 1/321 (0%)

Query: 14  QEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           +ED  I + LRP+ L ++ GQ +A   LK++IEAAK R EALDHVLF GPPGLGKTTLA 
Sbjct: 12  EEDIKIENNLRPQLLTDYIGQEKAKETLKIYIEAAKERGEALDHVLFYGPPGLGKTTLAG 71

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++A E+ VN + TSGP I K G++AA+L NL++ DVLF+DEIHRL+  VEE+LYPAMEDF
Sbjct: 72  IIANEMNVNMKITSGPAIEKPGEMAAILNNLQEGDVLFVDEIHRLNRQVEEVLYPAMEDF 131

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            +D+M+G+G +ARS++++L RFTL+ ATTR G+LT PL+DRFG+  RL FY   +LKTI+
Sbjct: 132 AIDIMIGKGATARSIRLDLPRFTLVGATTRAGMLTAPLRDRFGVVNRLEFYTAGELKTII 191

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R A++  + + +  A  +A RSRGTPR+A RLL+RVRDFA+V +   IT E+A+ AL  
Sbjct: 192 LRSAQVLEVGIDERGADALARRSRGTPRLANRLLKRVRDFAQVKYDGYITEEVANYALDL 251

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +DK G DQ D   L  +   F GGPVG++T++A + E    IED+ EPY+++ GFIQR
Sbjct: 252 LDVDKEGLDQTDRGLLLTMIDKFQGGPVGLDTLAAAVGEDAGTIEDVYEPYLLKNGFIQR 311

Query: 313 TPRGRLLMPIAWQHLGIDIPH 333
           TPRGR++   A +HLGI + +
Sbjct: 312 TPRGRVVTEAACRHLGISMEN 332


>gi|323489998|ref|ZP_08095219.1| Holliday junction DNA helicase RuvB [Planococcus donghaensis
           MPA1U2]
 gi|323396294|gb|EGA89119.1| Holliday junction DNA helicase RuvB [Planococcus donghaensis
           MPA1U2]
          Length = 332

 Score =  353 bits (905), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 173/311 (55%), Positives = 231/311 (74%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L ++ GQ +   NL++FIEAAK R E+LDHVL  GPPGLGKTTLA V+A E+ VN
Sbjct: 21  LRPQMLSQYIGQHKVKHNLQIFIEAAKMRQESLDHVLLYGPPGLGKTTLAAVIANEMEVN 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGP I + GDLAA++++LE  DVLFIDEIHRL+  +EE+LYPAMEDF LD++VG+G
Sbjct: 81  VKMTSGPAIERPGDLAAIVSSLEPGDVLFIDEIHRLNRAIEEVLYPAMEDFCLDIVVGKG 140

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARSV+++L  FTLI ATTR G L+ PL+DRFG+  RL++Y+ E L  IV R +KL   
Sbjct: 141 PTARSVRLDLPPFTLIGATTRAGALSAPLRDRFGVLSRLDYYDTEALTEIVIRSSKLFEA 200

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +   AA EIA RSRGTPRIA RLL+RVRD+A+V    TIT ++A+ AL  L +D +G D
Sbjct: 201 DINPNAAVEIARRSRGTPRIANRLLKRVRDYAQVRGTGTITMDMAEQALEMLQVDPLGLD 260

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + LT +   F GGPVG++TI+A + E    IED+ EPY++Q GFIQRTPRGR +  
Sbjct: 261 HIDHKLLTGMIERFRGGPVGLDTIAASIGEESTTIEDVYEPYLLQIGFIQRTPRGRTVTQ 320

Query: 322 IAWQHLGIDIP 332
           +A++H  +++P
Sbjct: 321 LAYEHFKLEMP 331


>gi|285808236|gb|ADC35770.1| Holliday junction DNA helicase B [uncultured bacterium 293]
          Length = 341

 Score =  353 bits (905), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 177/306 (57%), Positives = 225/306 (73%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPR L E+ GQ +  +NL+V IEAA +R EALDHVL  GPPG+GKT+LA V+A ELG  
Sbjct: 22  LRPRRLTEYVGQAQVVANLRVAIEAANSRGEALDHVLLFGPPGVGKTSLAHVIAAELGAT 81

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            ++T+GP+I +AGDLAALLT LE R+VLF+DEIHRL   VEEILYPA+ED+ LDLM+G G
Sbjct: 82  IKATAGPIIERAGDLAALLTALEPREVLFVDEIHRLDARVEEILYPALEDYSLDLMIGSG 141

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P ARS+KI L  FTL+ ATTR GLLT PL+ RFGI  RL+FY   +L+ IV R A++ G+
Sbjct: 142 PGARSMKIPLKPFTLVGATTRAGLLTAPLRARFGIVHRLDFYSQPELEFIVTRSAQILGV 201

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +    A EIA R+RGTPRIA RLLRRVRDFA+V     IT  +A  AL  L +D+ GFD
Sbjct: 202 PIDAAGAAEIARRARGTPRIANRLLRRVRDFAQVRAEGAITLAVAQQALALLEVDESGFD 261

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           ++D + L  I   FGGGPVG+  ++A +SE  DAIE++ EP+++Q GFI RTPRGR+   
Sbjct: 262 EVDRKLLLTIIDKFGGGPVGLGALAAAISEDADAIEEMYEPFLLQIGFIDRTPRGRVATR 321

Query: 322 IAWQHL 327
            A++HL
Sbjct: 322 RAYEHL 327


>gi|225012182|ref|ZP_03702619.1| Holliday junction DNA helicase RuvB [Flavobacteria bacterium
           MS024-2A]
 gi|225003737|gb|EEG41710.1| Holliday junction DNA helicase RuvB [Flavobacteria bacterium
           MS024-2A]
          Length = 339

 Score =  353 bits (905), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 178/321 (55%), Positives = 230/321 (71%), Gaps = 1/321 (0%)

Query: 9   SRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           + N + E+ DI   LRP +  +F GQ     NLKVF++AAK R EALDH LF GPPGLGK
Sbjct: 9   NENFTPEEQDIDRALRPLSFGDFAGQDAILENLKVFVQAAKQRDEALDHTLFHGPPGLGK 68

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127
           TTLA ++A EL V  + TSGPV+ K GDLA LLTNL+ RD+LFIDEIHRLS IVEE LY 
Sbjct: 69  TTLAHILANELQVGIKLTSGPVLDKPGDLAGLLTNLQPRDILFIDEIHRLSPIVEEYLYS 128

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           AMED+++D+M+  GP+AR+V+INL  FTL+ ATTR GLLT P++ RFGI  RL +Y  E 
Sbjct: 129 AMEDYKIDIMIESGPNARTVQINLEPFTLVGATTRSGLLTAPMRARFGISNRLEYYSTEL 188

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           L TIV+R +++  + +  EAA EIA RSRGTPRI+  LLRRVRDFA++    TI  +I  
Sbjct: 189 LSTIVERSSEILNVPIAQEAAIEIAGRSRGTPRISNALLRRVRDFAQIKGDGTIDMKITQ 248

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
            AL  L +D  G D++D + LT +   F GGPVGI T++  +SE  + IE++ EP++IQQ
Sbjct: 249 YALKALQVDTHGLDEMDNKILTTLIDKFKGGPVGITTLATAVSENGETIEEVYEPFLIQQ 308

Query: 308 GFIQRTPRGRLLMPIAWQHLG 328
           GFI RTPRGR +  +A++HLG
Sbjct: 309 GFIVRTPRGREVTELAYKHLG 329


>gi|257440215|ref|ZP_05615970.1| holliday junction DNA helicase RuvB [Faecalibacterium prausnitzii
           A2-165]
 gi|257197249|gb|EEU95533.1| holliday junction DNA helicase RuvB [Faecalibacterium prausnitzii
           A2-165]
          Length = 351

 Score =  352 bits (904), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 170/327 (51%), Positives = 233/327 (71%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           ++   ++  D + + LRP+ LE++ GQ +   NLK+++EAAK R E +DH+L  GPPGLG
Sbjct: 12  MMQPGLTAADNEENSLRPQHLEDYIGQDKVKQNLKIYLEAAKRRGEPMDHILLYGPPGLG 71

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTTLA ++A E+GV  R TSGP I K GDLAALLTNL++ DVLFIDEIHRLS  VEE+LY
Sbjct: 72  KTTLAGIIANEMGVQIRITSGPAIEKPGDLAALLTNLQEGDVLFIDEIHRLSRQVEEVLY 131

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           PA+ED+ LD+M+G+GPSA+S++INL RFTL+ ATTR G +T PL+DRFG+ ++L  Y  +
Sbjct: 132 PALEDYALDIMIGKGPSAQSIRINLPRFTLVGATTRAGQITGPLRDRFGVLLKLELYSPD 191

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +L  I+QR A +    +T E A E+A  SRGTPR+A R L+RVRDFA V     I R+++
Sbjct: 192 ELSRIIQRSAGILDQPITPEGAYELAKCSRGTPRVANRFLKRVRDFATVLGDGIIDRDVS 251

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
             +L R+ +D +G D+LD   L  I   + GGPVG+ET++A L E    +EDL EPY++Q
Sbjct: 252 LMSLKRMDVDALGLDELDRSLLRAIIEMYNGGPVGLETLAAALGEEAVTLEDLCEPYLMQ 311

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            GF+ RTPRGR    +A++HLG+  P 
Sbjct: 312 MGFLTRTPRGRCATRLAYEHLGLKAPE 338


>gi|297529246|ref|YP_003670521.1| Holliday junction DNA helicase RuvB [Geobacillus sp. C56-T3]
 gi|297252498|gb|ADI25944.1| Holliday junction DNA helicase RuvB [Geobacillus sp. C56-T3]
          Length = 333

 Score =  352 bits (904), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 171/313 (54%), Positives = 229/313 (73%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E+ GQ +   NLKVFIEAAK R E LDHVL  GPPGLGKTTLA ++A E+GV 
Sbjct: 21  LRPQYLHEYIGQDKIKENLKVFIEAAKLREETLDHVLLYGPPGLGKTTLAVIIANEMGVE 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R+TSGP + + GDLAALLT+LE  DVLFIDEIHRL   VEE+LYPAMED+ LD+ +G+G
Sbjct: 81  LRATSGPALERPGDLAALLTSLEPGDVLFIDEIHRLPRAVEEVLYPAMEDYCLDIAIGKG 140

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P AR+++++L  FTL+ ATTR G L+ PL+DRFG+  RL +Y ++ L  I++R A +  +
Sbjct: 141 PDARTLRLDLPPFTLVGATTRAGALSAPLRDRFGVISRLEYYHVDQLAQIIERAAAILQI 200

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  EAA E+A R+RGTPRIA RLLRRVRDFA+V     IT  +A  AL RL +D++G D
Sbjct: 201 GIEREAALELARRARGTPRIANRLLRRVRDFAQVRGEGRITLPLAVEALERLQVDRLGLD 260

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           Q+D + L+ +   F GGPVG+ET++A + E    IE++ EPY++Q G +QRTPRGR++ P
Sbjct: 261 QIDHKLLSAMIEKFAGGPVGLETLAAVIGEEAQTIEEVYEPYLMQIGLLQRTPRGRVVTP 320

Query: 322 IAWQHLGIDIPHR 334
            A+ H  +++P R
Sbjct: 321 AAYTHFEMEVPKR 333


>gi|331002345|ref|ZP_08325863.1| Holliday junction ATP-dependent DNA helicase ruvB [Lachnospiraceae
           oral taxon 107 str. F0167]
 gi|330410161|gb|EGG89595.1| Holliday junction ATP-dependent DNA helicase ruvB [Lachnospiraceae
           oral taxon 107 str. F0167]
          Length = 332

 Score =  352 bits (904), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 170/326 (52%), Positives = 234/326 (71%), Gaps = 1/326 (0%)

Query: 7   LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           ++S  +++ED  I   LRP+ L E+ GQ +  +NLK++I+AAK R E+LDHVLF GPPGL
Sbjct: 5   IISTEITKEDKQIEKSLRPQFLHEYIGQEKIRNNLKIYIDAAKLRRESLDHVLFYGPPGL 64

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTL  ++A E+G N + TSGP I K GD+AA+L NL + DVLF+DEIHRL+  VEE+L
Sbjct: 65  GKTTLCNIIANEMGTNLKVTSGPAIEKPGDMAAILNNLNEGDVLFVDEIHRLNRQVEEVL 124

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           YPAMEDF +D+++G+   ARS++++L +FTL+ ATTR GLLT PL+DRFG+  +L FY  
Sbjct: 125 YPAMEDFAIDIVIGKDAGARSIRLDLPKFTLVGATTRAGLLTAPLRDRFGVVQKLEFYNT 184

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           ++LK IV+R + + G+ + D  A EIA RSRGTPR+A RLL+RVRDFA+V +   I +++
Sbjct: 185 DELKEIVKRSSIVLGVEIDDSGAVEIARRSRGTPRLANRLLKRVRDFAQVKYNGIIDKKV 244

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           AD AL  L +DK+G D  D   L  I   FGGGPVG+ T+SA + E    +ED+ EPY++
Sbjct: 245 ADYALDTLDVDKLGLDNNDRIILLTIIEKFGGGPVGLNTLSAAIGEDAGTLEDVYEPYLL 304

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDI 331
             G I RTP GR+    A+ HLGI++
Sbjct: 305 MNGLINRTPGGRVATENAYIHLGIEM 330


>gi|302389937|ref|YP_003825758.1| Holliday junction DNA helicase subunit RuvB [Thermosediminibacter
           oceani DSM 16646]
 gi|302200565|gb|ADL08135.1| Holliday junction DNA helicase subunit RuvB [Thermosediminibacter
           oceani DSM 16646]
          Length = 338

 Score =  352 bits (904), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 174/309 (56%), Positives = 227/309 (73%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP + +++ GQ +   +LK+F++AA  R E LDHVL  GPPGLGKTTLA ++ARELGVN
Sbjct: 22  LRPVSFDDYIGQDQVKESLKIFVKAALKRGEPLDHVLLYGPPGLGKTTLAYIIARELGVN 81

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGP I + GDLAA+LTNL +RD+LFIDEIHRL   VEEILYPAMEDF LD+M+G+G
Sbjct: 82  IKITSGPAIERPGDLAAVLTNLGERDLLFIDEIHRLHPAVEEILYPAMEDFALDIMIGKG 141

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P ARS+++NL  FTL+ ATTR G LT+PL+DRFGI   L+FY+ EDL  I+ R A++  +
Sbjct: 142 PGARSIRLNLRPFTLVGATTRAGALTSPLRDRFGIRCHLDFYKKEDLVRILLRSARILNI 201

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + ++AA  IA  SRGTPRIA RLL+R+RD+A+V     IT E+A   L  L +D  G D
Sbjct: 202 VLDEKAAERIAACSRGTPRIANRLLKRIRDYAQVKAEGVITEEVAVEGLKLLKVDSCGLD 261

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           Q D R L  I   FGGGPVGI++++A L+E    IED+ EPY+IQ+G+I RT RGR+   
Sbjct: 262 QDDRRLLETIIEKFGGGPVGIDSLAAALNEEASTIEDIYEPYLIQEGYILRTARGRIASD 321

Query: 322 IAWQHLGID 330
            A++HLGI+
Sbjct: 322 KAYEHLGIE 330


>gi|322437278|ref|YP_004219490.1| Holliday junction DNA helicase RuvB [Acidobacterium sp. MP5ACTX9]
 gi|321165005|gb|ADW70710.1| Holliday junction DNA helicase RuvB [Acidobacterium sp. MP5ACTX9]
          Length = 339

 Score =  352 bits (904), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 167/313 (53%), Positives = 235/313 (75%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP  L EF GQ +A   L + +EAAK+R EALDHVL  GPPGLGKTTLA ++A E+GV 
Sbjct: 22  LRPTRLAEFIGQSKAKEQLAIALEAAKSRGEALDHVLLFGPPGLGKTTLATIIANEMGVG 81

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           F+ TSGP +   GDL A+L+N++D+ VLF+DE+HRL  +++E LY A+ED+ LD+M+G G
Sbjct: 82  FQQTSGPALMIQGDLTAILSNIKDKQVLFLDEVHRLQPVLQEKLYTALEDYSLDIMIGSG 141

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+AR+  +++  FT +AATTR GLL++P++ RFGI +RL FY  ++L+ IV+R A++ G+
Sbjct: 142 PAARTFVLDIKPFTFVAATTRPGLLSSPMRARFGILLRLEFYTDDELRFIVERSAEVLGV 201

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  + A EIAMRSRGTPRIA RLLRRVRD+A+V  A  I RE A+AAL  L +D  GFD
Sbjct: 202 PIDRDGAAEIAMRSRGTPRIANRLLRRVRDYAQVRAAGVIDRETANAALEMLEVDAHGFD 261

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           +LD R L  I   + GGPVG+ T++A L+E +DA+E++ EP++IQ GF+ RTPRGR+   
Sbjct: 262 ELDRRLLRTIIEKYDGGPVGLNTLAAALAEEQDALEEVYEPFLIQIGFLDRTPRGRVATR 321

Query: 322 IAWQHLGIDIPHR 334
           +A++HLG+++P +
Sbjct: 322 LAYEHLGLEMPRK 334


>gi|116872961|ref|YP_849742.1| Holliday junction DNA helicase B [Listeria welshimeri serovar 6b
           str. SLCC5334]
 gi|123463789|sp|A0AIY1|RUVB_LISW6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|116741839|emb|CAK20963.1| holliday junction DNA helicase RuvB [Listeria welshimeri serovar 6b
           str. SLCC5334]
          Length = 335

 Score =  352 bits (904), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 182/329 (55%), Positives = 232/329 (70%), Gaps = 1/329 (0%)

Query: 2   MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD   + S  V  E+    + LRP+TL ++ GQ +  +NL VFIEAA  R EALDHVL  
Sbjct: 1   MDERIISSETVDAEEVSFETSLRPQTLSQYIGQDKVKNNLTVFIEAATLRNEALDHVLLY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA V+A E+G   ++TSGP I + GDLA +LT+LE  DVLFIDEIHRLS  
Sbjct: 61  GPPGLGKTTLAMVIASEMGSQIKTTSGPAIERPGDLATILTSLEPGDVLFIDEIHRLSRA 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EEILYPAMED+ LD+++G GP+ARSV+++L  FTLI ATTR GLL+ PL+DRFG+   L
Sbjct: 121 IEEILYPAMEDYCLDIVIGTGPTARSVRLDLPPFTLIGATTRAGLLSAPLRDRFGVIDHL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  E L  IV R A +    + D  A EIA RSRGTPRIA RLL+RVRDFA+V    T
Sbjct: 181 EFYTEEQLTEIVLRTAGILDTKIDDLGAREIARRSRGTPRIANRLLKRVRDFAQVRGNGT 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +T ++A  AL  L +D  G D +D + L  I ++F GGPVG++TI+A + E R+ IED+ 
Sbjct: 241 VTEKLAKEALTLLQVDPRGLDTIDQKLLHTIIQSFRGGPVGLDTIAASIGEERETIEDMQ 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           EPY++Q GF+QRTPRGR+    A+ HLGI
Sbjct: 301 EPYLLQIGFLQRTPRGRIATETAYNHLGI 329


>gi|221194838|ref|ZP_03567895.1| holliday junction DNA helicase RuvB [Atopobium rimae ATCC 49626]
 gi|221185742|gb|EEE18132.1| holliday junction DNA helicase RuvB [Atopobium rimae ATCC 49626]
          Length = 357

 Score =  352 bits (904), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 171/313 (54%), Positives = 231/313 (73%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+TL+E+ GQ     NL+V I+AAK R E LDHV+F GPPGLGKTTLA V+A E+   
Sbjct: 44  LRPKTLDEYLGQSRVKENLRVLIQAAKKRDEPLDHVIFSGPPGLGKTTLAGVLAGEMNSK 103

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
             +TSGP I + GDLAA+LTNLE+ D+LFIDEIHRL+  VEE+LYPAMEDF LD+++G+G
Sbjct: 104 LHTTSGPAIERTGDLAAILTNLEEGDILFIDEIHRLNHQVEEVLYPAMEDFFLDIVIGKG 163

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+++++ RFTL+AATTR GLLT PL+DRFGI  RL++Y +E+LKTIV R A +  +
Sbjct: 164 PAARSIRLDIPRFTLVAATTRTGLLTGPLRDRFGIAYRLDYYSVEELKTIVLRSATILDV 223

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
           ++ ++ A EIA RSRGTPR+A RLL+RVRD+A+V     IT EIA  AL    ID++G D
Sbjct: 224 SIDEQGALEIASRSRGTPRLANRLLKRVRDYAQVKAGGMITWEIAAQALSFFDIDELGLD 283

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D+  L  + + F G PVG+ T+++ +SE    +ED+ EP+++QQG I RTP+GR    
Sbjct: 284 AMDVSVLRALCQTFHGRPVGLTTLASAVSEDPSTLEDVYEPFLLQQGLIIRTPQGRQATQ 343

Query: 322 IAWQHLGIDIPHR 334
            A+ HL I  P +
Sbjct: 344 SAFNHLSIPFPSQ 356


>gi|303237792|ref|ZP_07324350.1| Holliday junction DNA helicase RuvB [Prevotella disiens FB035-09AN]
 gi|302482017|gb|EFL45054.1| Holliday junction DNA helicase RuvB [Prevotella disiens FB035-09AN]
          Length = 350

 Score =  352 bits (904), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 175/320 (54%), Positives = 229/320 (71%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           VS E    + LRP   ++F+GQ +   NL+VF+EAAK R E LDH L  GPPGLGKTTL+
Sbjct: 22  VSAEKEFENALRPPKFDDFSGQDKVVENLRVFVEAAKYRGEPLDHTLLHGPPGLGKTTLS 81

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            ++A ELGV F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS +VEE LY AMED
Sbjct: 82  NIIANELGVGFKITSGPVLDKPGDLAGILTSLEPNDVLFIDEIHRLSPVVEEYLYSAMED 141

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           +++D+M+ +GPSARS++I+L+ FTL+ ATTR GLLT PL+ RFGI + L +Y  E L  I
Sbjct: 142 YRIDIMIDKGPSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGINLHLEYYAPETLSKI 201

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           ++R A L  + + ++AA EIA RSRGTPRI   LLRRVRDFA+V    TI   IA ++L 
Sbjct: 202 IKRSANLLKVPIYEDAAVEIARRSRGTPRICNSLLRRVRDFAQVKGNGTIDHAIAQSSLQ 261

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L IDK G D++D + L  I   F GGPVGI TI+  + E    +E++ EPY+I +GFI+
Sbjct: 262 ALNIDKYGLDEIDNKILLTIIDKFRGGPVGISTIATAIGEDGGTVEEVYEPYLIMEGFIK 321

Query: 312 RTPRGRLLMPIAWQHLGIDI 331
           RTPRGR+   +A++HLG +I
Sbjct: 322 RTPRGRMATALAYEHLGKNI 341


>gi|302035799|ref|YP_003796121.1| holliday junction ATP-dependent DNA helicase RuvB [Candidatus
           Nitrospira defluvii]
 gi|300603863|emb|CBK40195.1| Holliday junction ATP-dependent DNA helicase RuvB [Candidatus
           Nitrospira defluvii]
          Length = 345

 Score =  352 bits (904), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 168/306 (54%), Positives = 226/306 (73%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP++L+E+ GQ     +L++ IEAAK R EALDH +F GPPGLGKTT+A ++ARE+G  
Sbjct: 21  LRPQSLQEYVGQSRMKDSLEICIEAAKRRGEALDHAIFYGPPGLGKTTIAHIIAREMGSA 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            RSTSG V++ AGDLAA+LTNL++RDVLFIDEIHRL   VEE LYPAMED+QLDL+VG+G
Sbjct: 81  IRSTSGLVLSHAGDLAAILTNLQERDVLFIDEIHRLPASVEEALYPAMEDYQLDLVVGQG 140

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            S R+VK+ L RFTL+ ATTR G LT+PL+DRFG+  RL FY  ++L +IV R A L  +
Sbjct: 141 ASTRTVKLELPRFTLVGATTRAGALTSPLRDRFGLVHRLEFYSPQELTSIVTRSAGLLNI 200

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + +  A EIA R+RGTPRI  RL++R+RD+AE+     ITR++A  AL+ LA+D  G D
Sbjct: 201 PIDEAGAAEIARRARGTPRIVNRLIKRIRDYAEIKAGGRITRQVAQDALVWLAVDAAGLD 260

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           ++D R L  +   F GGPVG+++++A + E R  +ED+ EPY+IQ GF++RT RGR    
Sbjct: 261 EMDRRILLTVMEKFNGGPVGVDSLAAAVQEDRGTLEDVYEPYLIQAGFLERTGRGRQATR 320

Query: 322 IAWQHL 327
           +A+ H 
Sbjct: 321 LAFDHF 326


>gi|217964321|ref|YP_002349999.1| holliday junction DNA helicase RuvB [Listeria monocytogenes HCC23]
 gi|255023715|ref|ZP_05295701.1| Holliday junction DNA helicase RuvB [Listeria monocytogenes FSL
           J1-208]
 gi|254767430|sp|B8DHL6|RUVB_LISMH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|217333591|gb|ACK39385.1| holliday junction DNA helicase RuvB [Listeria monocytogenes HCC23]
 gi|307571113|emb|CAR84292.1| holliday junction DNA helicase [Listeria monocytogenes L99]
          Length = 335

 Score =  352 bits (904), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 181/329 (55%), Positives = 232/329 (70%), Gaps = 1/329 (0%)

Query: 2   MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD   + S  V  E+    + LRP+TL ++ GQ +  +NL VFIEAA  R EALDHVL  
Sbjct: 1   MDERIISSETVDAEEVSFETSLRPQTLSQYIGQDKVKNNLTVFIEAATLRNEALDHVLLY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA V+A E+G   ++TSGP I + GDLA +LT+LE  DVLFIDEIHRLS  
Sbjct: 61  GPPGLGKTTLAMVIASEMGSQIKTTSGPAIERPGDLATILTSLEPGDVLFIDEIHRLSRA 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EEILYPAMED+ LD+++G GP+ARSV+++L  FTLI ATTR GLL+ PL+DRFG+   L
Sbjct: 121 IEEILYPAMEDYCLDIVIGTGPTARSVRLDLPPFTLIGATTRAGLLSAPLRDRFGVIDHL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  E L  IV R + +    + D  A EIA RSRGTPRIA RLL+RVRDFA+V    T
Sbjct: 181 EFYTEEQLTEIVLRTSNILDTKIDDLGAREIARRSRGTPRIANRLLKRVRDFAQVRGNGT 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +T ++A  AL  L +D  G D +D + L  I ++F GGPVG++TI+A + E R+ IED+ 
Sbjct: 241 VTEKLAKEALTLLQVDPRGLDTIDQKLLHTIIQSFRGGPVGLDTIAASIGEERETIEDMQ 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           EPY++Q GF+QRTPRGR+    A+ HLGI
Sbjct: 301 EPYLLQIGFLQRTPRGRIATETAYNHLGI 329


>gi|295102070|emb|CBK99615.1| Holliday junction DNA helicase, RuvB subunit [Faecalibacterium
           prausnitzii L2-6]
          Length = 351

 Score =  352 bits (904), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 170/327 (51%), Positives = 233/327 (71%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           ++   ++  D++ + LRP+ LE++ GQ +   NLK+++EAAK R E +DH+L  GPPGLG
Sbjct: 12  MMQPGMTAADSEENNLRPQHLEDYIGQEKVKQNLKIYLEAAKRRGEPMDHILLYGPPGLG 71

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTTLA ++A E+GV  R TSGP I K GDLAALLTNL++ DVLFIDEIHRLS  VEE+LY
Sbjct: 72  KTTLAGIIANEMGVQIRITSGPAIEKPGDLAALLTNLQEGDVLFIDEIHRLSRQVEEVLY 131

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           PA+ED+ LD+M+G+GPSA+S++INL RFTL+ ATTR G +T PL+DRFG+ ++L  Y  +
Sbjct: 132 PALEDYALDIMIGKGPSAQSIRINLPRFTLVGATTRAGQITGPLRDRFGVLLKLELYSPD 191

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +L  I+ R A +    +T E A E+A  SRGTPR+A R L+RVRDFA V     I R++A
Sbjct: 192 ELSNIIIRSAGILDQPITPEGAYELAKCSRGTPRVANRFLKRVRDFATVLGDGVIDRDVA 251

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
             +L R+ +D +G D+LD   L  I   + GGPVG+ET++A L E    +EDL EPY++Q
Sbjct: 252 LLSLKRMDVDALGLDELDRSLLRAIIEMYNGGPVGLETLAAALGEEAVTLEDLCEPYLMQ 311

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            GF+ RTPRGR    +A++HLG+  P 
Sbjct: 312 MGFLTRTPRGRCATRLAYEHLGLKAPE 338


>gi|251780556|ref|ZP_04823476.1| Holliday junction DNA helicase RuvB [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243084871|gb|EES50761.1| Holliday junction DNA helicase RuvB [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 344

 Score =  352 bits (904), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 173/315 (54%), Positives = 232/315 (73%), Gaps = 1/315 (0%)

Query: 15  EDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           ED +  L LRP+ + E+ GQ +    L +FI+AAK R EALDHVL  GPPGLGKTTLA +
Sbjct: 12  EDGNSELSLRPQKINEYIGQDKVKERLNIFIKAAKNRKEALDHVLLYGPPGLGKTTLANI 71

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +A+E+  + + TSGP I +AGDLAA+LT L+D DVLFIDEIHRL+  VEEILYPAMED+ 
Sbjct: 72  IAKEMTGDLKITSGPAIERAGDLAAILTTLKDYDVLFIDEIHRLNRSVEEILYPAMEDYA 131

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           LD+++G+G +A+S++++L +FTLI ATTR+G+LT+PL+DRFG+   + +Y+   LK IV 
Sbjct: 132 LDIVIGKGAAAKSIRLDLPKFTLIGATTRIGMLTSPLRDRFGVLCAMEYYDENQLKEIVI 191

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A + G  +T+E A EIA RSRGTPRIA RLL+RVRD++EV   K I+ + A  AL  L
Sbjct: 192 RSAAVFGCKITEEGALEIASRSRGTPRIANRLLKRVRDYSEVKSNKVISLKEAREALELL 251

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D  GFD++D + L  I  NF GGPVGIET+S  + E    +ED+ EPY++Q+GFI RT
Sbjct: 252 EVDNQGFDKVDNKILEAIIDNFNGGPVGIETLSYFIGEELGTVEDVYEPYLLQKGFIVRT 311

Query: 314 PRGRLLMPIAWQHLG 328
           PRGR+    A++HLG
Sbjct: 312 PRGRIASDKAYKHLG 326


>gi|196233359|ref|ZP_03132203.1| Holliday junction DNA helicase RuvB [Chthoniobacter flavus
           Ellin428]
 gi|196222499|gb|EDY17025.1| Holliday junction DNA helicase RuvB [Chthoniobacter flavus
           Ellin428]
          Length = 339

 Score =  352 bits (903), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 171/317 (53%), Positives = 228/317 (71%), Gaps = 1/317 (0%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           DISL RP    EF GQ + C  L++ ++AA+ R + L+H+L  GPPGLGKTTLA ++A  
Sbjct: 18  DISL-RPPMFSEFAGQDKVCQRLELMVQAAQQRGDVLEHILLSGPPGLGKTTLAYILAHA 76

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           +GVN ++TSGP I KAGDLA LLT LE  DVLFIDEIHRL   +EE LYPAMED++LD++
Sbjct: 77  MGVNIKNTSGPTIEKAGDLAGLLTTLERGDVLFIDEIHRLQPAIEEYLYPAMEDYKLDII 136

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
           + +GP+ARS+ +NL RFTLI ATTR G+L+ PL+ RFG+  RL++Y  E+L+ IV R A 
Sbjct: 137 IDQGPNARSIPLNLPRFTLIGATTRAGMLSAPLRTRFGMTCRLDYYTAEELQKIVLRSAG 196

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257
           L GL + D  A EIA RSRGTPRIA  LLR VRDFA+V     +TR++AD AL  L ID+
Sbjct: 197 LIGLDIDDPGALEIAARSRGTPRIANNLLRWVRDFAQVRAGNRVTRDVADKALEMLDIDR 256

Query: 258 MGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317
            GFD++D R L  +   F GGPVGI +++  + +    +ED+ EPY+I QG+I+RTP+GR
Sbjct: 257 DGFDEMDKRILEALVHKFNGGPVGINSLAVAIGDDPGTLEDVHEPYLIMQGYIKRTPQGR 316

Query: 318 LLMPIAWQHLGIDIPHR 334
           + +P+ ++ LGI  P R
Sbjct: 317 VALPLCYRKLGISAPRR 333


>gi|194468326|ref|ZP_03074312.1| Holliday junction DNA helicase RuvB [Lactobacillus reuteri 100-23]
 gi|194453179|gb|EDX42077.1| Holliday junction DNA helicase RuvB [Lactobacillus reuteri 100-23]
          Length = 338

 Score =  352 bits (903), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 172/334 (51%), Positives = 241/334 (72%), Gaps = 2/334 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M +  G+LS + S +E++ + + LRP+ L+E+ GQ +    L+V+I+AA++R EALDHVL
Sbjct: 1   MENDHGILSDHPSGEEESQVEITLRPQKLKEYIGQPKIKHELEVYIKAAQSREEALDHVL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA V+A E+GVN ++TSGP I K GDL ALL  L+  DVLF+DEIHRL 
Sbjct: 61  LYGPPGLGKTTLAMVIANEMGVNIKTTSGPAIEKPGDLVALLNELKPGDVLFVDEIHRLP 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            +VEE+LY AMED+ +D+++GEGP+A  V   L  FTLI ATTR G+L+ PL+DRFGI  
Sbjct: 121 KVVEEMLYSAMEDYYIDIVIGEGPTAHPVHFPLPPFTLIGATTRAGMLSAPLRDRFGIVE 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
            +N+Y  ++L  I+ R AK+   ++ +E A E+++RSRGTPRIA RLL+RVRDFA+VA  
Sbjct: 181 HMNYYTQDELTKIIFRSAKIFHTSIQNEGAHELSLRSRGTPRIANRLLKRVRDFAQVAGK 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
           ++I   I   AL  L +D  G D++D + L  +   + GGPVG++TI+A + E  + IE+
Sbjct: 241 RSIDSAIVKQALSLLQVDDRGLDEIDRKMLLTMINFYHGGPVGLKTIAANIGEETNTIEE 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           + EPY++Q GFI RTPRGRL+ P A++HLGI+ P
Sbjct: 301 MYEPYLLQIGFISRTPRGRLVTPTAYEHLGIEYP 334


>gi|262197091|ref|YP_003268300.1| Holliday junction DNA helicase RuvB [Haliangium ochraceum DSM
           14365]
 gi|262080438|gb|ACY16407.1| Holliday junction DNA helicase RuvB [Haliangium ochraceum DSM
           14365]
          Length = 376

 Score =  352 bits (903), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 172/313 (54%), Positives = 226/313 (72%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+  +++ GQ +  +NL+V + AAK    ALDH LF GPPGLGKTTLA V+A ELGV 
Sbjct: 54  LRPQRFDDYVGQPDIIANLRVSVSAAKQNGWALDHFLFAGPPGLGKTTLAHVIANELGVG 113

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
              TSGP I   G LA+LLT L + DVLFIDEIHRL+ +VEE LYPAMEDF+ DL +G+G
Sbjct: 114 VHVTSGPAIDHKGMLASLLTALGEGDVLFIDEIHRLNPVVEENLYPAMEDFKFDLFIGDG 173

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P A++V +NL RFTL+ ATTR+GLL++PL DRFG   +L +Y++ ++  IV R A++ G+
Sbjct: 174 PHAKAVTMNLPRFTLLGATTRMGLLSSPLLDRFGFHWQLGYYDLSEMAAIVARSAQVLGV 233

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + D  A EIA RSRGTPRIA RLLRRVRDFA V  +  I  ++A AAL RL++D  G D
Sbjct: 234 GMEDGGALEIARRSRGTPRIANRLLRRVRDFATVESSGVIGGKLAAAALDRLSVDHAGLD 293

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            LD  YLT++   F GGPVG++ I+A +SE R  +ED++EP+++Q GFI RTPRGR+   
Sbjct: 294 ALDRAYLTVVVERFDGGPVGVDAIAASMSEERGTLEDVVEPFLLQAGFITRTPRGRMATA 353

Query: 322 IAWQHLGIDIPHR 334
            A++HLG+  P R
Sbjct: 354 AAFRHLGVRAPGR 366


>gi|302872057|ref|YP_003840693.1| Holliday junction DNA helicase RuvB [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302574916|gb|ADL42707.1| Holliday junction DNA helicase RuvB [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 338

 Score =  352 bits (902), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 169/323 (52%), Positives = 227/323 (70%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           E LL    S ED     LRP+TLE++ GQ +    +K+FIEAAK R E LDHVL  GPPG
Sbjct: 2   ERLLDNKFSVEDVHEETLRPKTLEDYIGQQKVKEKIKIFIEAAKKRKEPLDHVLLYGPPG 61

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLA ++A E+GV+ + TSGP I +AGDL A+LTN+ + ++LFIDEIHRL+  +EE+
Sbjct: 62  LGKTTLANIIANEMGVDIKVTSGPAIERAGDLVAILTNIGENNILFIDEIHRLNRTIEEV 121

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPAMED ++D+++G+GPSA+++++ L  FTLI ATTR GLL++PL+DRFGI  RL++Y 
Sbjct: 122 LYPAMEDKKVDIVIGKGPSAKTIRLTLPPFTLIGATTRAGLLSSPLRDRFGIIERLDYYT 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +E+L  IV R A +    +  EA  EIA RSRGTPR+A RLLRR+RD+A V H  +IT E
Sbjct: 182 VEELSQIVMRSASILKCDIEKEACIEIAKRSRGTPRVANRLLRRLRDYATVKHTGSITYE 241

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +A   L    +D+ G D +D   L  I   FGGGPVG+ TI+A + E    IED+ EPY+
Sbjct: 242 VAKNGLEMFEVDEYGLDLVDRNILEAIVYKFGGGPVGLSTIAAAIGEDEGTIEDIYEPYL 301

Query: 305 IQQGFIQRTPRGRLLMPIAWQHL 327
           IQ+GF+ +T RGR+    A  H+
Sbjct: 302 IQEGFLVKTARGRVATQKAINHI 324


>gi|312793295|ref|YP_004026218.1| holliday junction DNA helicase ruvb [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312180435|gb|ADQ40605.1| Holliday junction DNA helicase RuvB [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 338

 Score =  352 bits (902), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 169/323 (52%), Positives = 228/323 (70%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           E LL    S ED     LRP+TLE++ GQ +    +K+FIEAAK R E LDHVL  GPPG
Sbjct: 2   ERLLDNKFSVEDVHEESLRPKTLEDYIGQQKVKEKIKIFIEAAKKRKEPLDHVLLYGPPG 61

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLA ++A E+GV+ + TSGP I +AGDL A+LTN+ + ++LFIDEIHRL+  +EE+
Sbjct: 62  LGKTTLANIIANEMGVDIKVTSGPAIERAGDLVAILTNIGENNILFIDEIHRLNRTIEEV 121

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPAMED ++D+++G+GPSA+++++ L  FTLI ATTR GLL++PL+DRFGI  RL++Y 
Sbjct: 122 LYPAMEDKKVDIVIGKGPSAKTIRLTLPPFTLIGATTRAGLLSSPLRDRFGIIERLDYYT 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +E+L  IV R A +    +  EA  EIA RSRGTPR+A RLLRR+RD+A V H  +IT E
Sbjct: 182 VEELSQIVMRSASILKCDIEKEACIEIAKRSRGTPRVANRLLRRLRDYAMVKHTGSITYE 241

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +A + L    +D+ G D +D   L  I   FGGGPVG+ TI+A + E    IED+ EPY+
Sbjct: 242 VAKSGLEMFEVDEYGLDLVDRNILEAIVYKFGGGPVGLSTIAAAIGEDEGTIEDIYEPYL 301

Query: 305 IQQGFIQRTPRGRLLMPIAWQHL 327
           IQ+GF+ +T RGR+    A  H+
Sbjct: 302 IQEGFLVKTARGRVATQKAINHI 324


>gi|146296578|ref|YP_001180349.1| Holliday junction DNA helicase B [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|166231474|sp|A4XJS3|RUVB_CALS8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|145410154|gb|ABP67158.1| Holliday junction DNA helicase subunit RuvB [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 338

 Score =  352 bits (902), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 169/323 (52%), Positives = 228/323 (70%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           E LL    S ED     LRP+TLE++ GQ +    +K+FIEAAK R E LDHVL  GPPG
Sbjct: 2   ERLLDNKFSIEDVHEESLRPKTLEDYIGQQKVKEKIKIFIEAAKKRKEPLDHVLLYGPPG 61

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLA ++A E+GV+ + TSGP I +AGDL A+LTN+ + ++LFIDEIHRL+  +EE+
Sbjct: 62  LGKTTLANIIANEMGVDIKVTSGPAIERAGDLVAILTNIGENNILFIDEIHRLNRTIEEV 121

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPAMED ++D+++G+GPSA+++++ L  FTLI ATTR GLL++PL+DRFGI  RL++Y 
Sbjct: 122 LYPAMEDKKVDIVIGKGPSAKTIRLTLPPFTLIGATTRAGLLSSPLRDRFGIIERLDYYT 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +E+L  IV R A +    +  EA  EIA RSRGTPR+A RLLRR+RD+A V H  +IT E
Sbjct: 182 VEELSQIVMRSASILKCDIEKEACIEIAKRSRGTPRVANRLLRRLRDYAMVKHTGSITYE 241

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +A + L    +D+ G D +D   L  I   FGGGPVG+ TI+A + E    IED+ EPY+
Sbjct: 242 VAKSGLEMFEVDEYGLDLVDRNILEAIVYKFGGGPVGLSTIAAAIGEDEGTIEDIYEPYL 301

Query: 305 IQQGFIQRTPRGRLLMPIAWQHL 327
           IQ+GF+ +T RGR+    A  H+
Sbjct: 302 IQEGFLVKTARGRVATQKAINHI 324


>gi|325290231|ref|YP_004266412.1| Holliday junction DNA helicase subunit RuvB [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324965632|gb|ADY56411.1| Holliday junction DNA helicase subunit RuvB [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 333

 Score =  352 bits (902), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 176/318 (55%), Positives = 230/318 (72%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           + D  +  LRP    E+ GQ +   NLK+FIEAA  R E+LDHVL  GPPGLGKTTLA +
Sbjct: 12  EADRGMEELRPSRFREYIGQSKVKENLKIFIEAALKRGESLDHVLLYGPPGLGKTTLAHI 71

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +A E+GVN R+TSGP I + GDLAALLT+LE RDVLFIDEIHRLS   EE+LY AMED  
Sbjct: 72  IASEMGVNIRTTSGPAIERPGDLAALLTSLEPRDVLFIDEIHRLSRTSEEVLYSAMEDSC 131

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           LD+++G+GP ARS+++ L+ FTLI ATTR G LT+PL+DRFG+  RL FY  E+L  IV 
Sbjct: 132 LDIVIGKGPGARSMRLALTPFTLIGATTRAGQLTSPLRDRFGVINRLEFYTQEELVEIVT 191

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A +  + +TDE A EIA RSRGTPRIA RLL+RVRD+A+V     I   +A  AL  L
Sbjct: 192 RTAVILDVGLTDEGAEEIAKRSRGTPRIANRLLKRVRDYAQVWENGGIDLALASQALNLL 251

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D +G D +D + L  I  +F GGPVG++T++A + E  + IED++EP+++Q+GFIQRT
Sbjct: 252 EVDHLGLDNIDKKVLQTIVTSFNGGPVGLDTLAATVGEEAETIEDVVEPFLLQKGFIQRT 311

Query: 314 PRGRLLMPIAWQHLGIDI 331
           PRGR +  +A +HLG+ +
Sbjct: 312 PRGRTVTDLALRHLGLSL 329


>gi|312127828|ref|YP_003992702.1| holliday junction DNA helicase ruvb [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777847|gb|ADQ07333.1| Holliday junction DNA helicase RuvB [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 338

 Score =  352 bits (902), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 169/323 (52%), Positives = 228/323 (70%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           E LL    S ED     LRP+TLE++ GQ +    +K+FIEAAK R E LDHVL  GPPG
Sbjct: 2   ERLLDNKFSIEDVHEESLRPKTLEDYIGQQKVKEKIKIFIEAAKKRKEPLDHVLLYGPPG 61

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLA ++A E+GV+ + TSGP I +AGDL A+LTN+ + ++LFIDEIHRL+  +EE+
Sbjct: 62  LGKTTLANIIANEMGVDIKVTSGPAIERAGDLVAILTNIGENNILFIDEIHRLNRTIEEV 121

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPAMED ++D+++G+GPSA+++++ L  FTLI ATTR GLL++PL+DRFGI  RL++Y 
Sbjct: 122 LYPAMEDKKVDIVIGKGPSAKTIRLTLPPFTLIGATTRAGLLSSPLRDRFGIIERLDYYT 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +E+L  IV R A +    +  EA  EIA RSRGTPR+A RLLRR+RD+A V H  +IT E
Sbjct: 182 VEELSQIVMRSASILKCDIEKEACIEIAKRSRGTPRVANRLLRRLRDYAMVKHTGSITYE 241

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +A + L    +D+ G D +D   L  I   FGGGPVG+ TI+A + E    IED+ EPY+
Sbjct: 242 VAKSGLEMFEVDEYGLDLVDRNILEAIVYKFGGGPVGLSTIAAAIGEDEGTIEDIYEPYL 301

Query: 305 IQQGFIQRTPRGRLLMPIAWQHL 327
           IQ+GF+ +T RGR+    A  H+
Sbjct: 302 IQEGFLVKTARGRVATQKAINHI 324


>gi|28211816|ref|NP_782760.1| Holliday junction DNA helicase RuvB [Clostridium tetani E88]
 gi|44888476|sp|Q891Z8|RUVB_CLOTE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|28204258|gb|AAO36697.1| holliday junction DNA helicase ruvB [Clostridium tetani E88]
          Length = 345

 Score =  352 bits (902), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 173/319 (54%), Positives = 230/319 (72%), Gaps = 1/319 (0%)

Query: 14  QEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           +ED DI   LRP  LEE+ GQ +    L++FI+AAK R E+LDHVL  GPPGLGKTTLA 
Sbjct: 15  EEDIDIEYNLRPTQLEEYIGQSKVREKLRIFIKAAKNRGESLDHVLLYGPPGLGKTTLAN 74

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++A+E+  N + TSGP I +AGDLAA+LT L + DVLFIDEIHRL+  VEEILYPAMED+
Sbjct: 75  IIAKEMKGNLKITSGPAIERAGDLAAILTTLNEHDVLFIDEIHRLNRAVEEILYPAMEDY 134

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            LD+++G+G +A+S++++L  FTLI ATTRVGLLT PL+DRFG+   + FY  E+LK I+
Sbjct: 135 ALDIVIGKGAAAKSIRLDLPHFTLIGATTRVGLLTAPLRDRFGVLCPMEFYNEEELKDII 194

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R +K+  +   +EAA E+A RSRGTPRIA R+L+RVRD++EV     I   + + AL  
Sbjct: 195 VRSSKILNVKTEEEAAYELARRSRGTPRIANRILKRVRDYSEVMGDGIIDLNMTNKALNL 254

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L IDK GFD +D + L  I  NF GGPVG+ET++  + E  D IED+ EPY++Q+GFI R
Sbjct: 255 LEIDKEGFDSIDTKILKAILDNFNGGPVGLETLAYFIGEELDTIEDVYEPYLLQKGFIMR 314

Query: 313 TPRGRLLMPIAWQHLGIDI 331
           TPRGR+     ++H   +I
Sbjct: 315 TPRGRVATEKTYKHFKREI 333


>gi|16803572|ref|NP_465057.1| Holliday junction DNA helicase RuvB [Listeria monocytogenes EGD-e]
 gi|47097029|ref|ZP_00234602.1| holliday junction DNA helicase RuvB [Listeria monocytogenes str.
           1/2a F6854]
 gi|224499807|ref|ZP_03668156.1| Holliday junction DNA helicase RuvB [Listeria monocytogenes Finland
           1988]
 gi|224501528|ref|ZP_03669835.1| Holliday junction DNA helicase RuvB [Listeria monocytogenes FSL
           R2-561]
 gi|254829709|ref|ZP_05234364.1| Holliday junction DNA helicase RuvB [Listeria monocytogenes 10403S]
 gi|254898302|ref|ZP_05258226.1| Holliday junction DNA helicase RuvB [Listeria monocytogenes J0161]
 gi|254912206|ref|ZP_05262218.1| holliday junction ATP-dependent DNA helicase ruvB [Listeria
           monocytogenes J2818]
 gi|254936534|ref|ZP_05268231.1| ruvB [Listeria monocytogenes F6900]
 gi|255027599|ref|ZP_05299585.1| Holliday junction DNA helicase RuvB [Listeria monocytogenes FSL
           J2-003]
 gi|255030239|ref|ZP_05302190.1| Holliday junction DNA helicase RuvB [Listeria monocytogenes LO28]
 gi|284801922|ref|YP_003413787.1| Holliday junction DNA helicase B [Listeria monocytogenes 08-5578]
 gi|284995064|ref|YP_003416832.1| Holliday junction DNA helicase B [Listeria monocytogenes 08-5923]
 gi|20140052|sp|Q8Y6Z8|RUVB_LISMO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|16410961|emb|CAC99610.1| ruvB [Listeria monocytogenes EGD-e]
 gi|47014611|gb|EAL05571.1| holliday junction DNA helicase RuvB [Listeria monocytogenes str.
           1/2a F6854]
 gi|258609128|gb|EEW21736.1| ruvB [Listeria monocytogenes F6900]
 gi|284057484|gb|ADB68425.1| Holliday junction DNA helicase B [Listeria monocytogenes 08-5578]
 gi|284060531|gb|ADB71470.1| Holliday junction DNA helicase B [Listeria monocytogenes 08-5923]
 gi|293590179|gb|EFF98513.1| holliday junction ATP-dependent DNA helicase ruvB [Listeria
           monocytogenes J2818]
          Length = 335

 Score =  352 bits (902), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 180/329 (54%), Positives = 232/329 (70%), Gaps = 1/329 (0%)

Query: 2   MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD   + S  V  E+    + LRP+ L ++ GQ +  +NL VFIEAA  R EALDHVL  
Sbjct: 1   MDERIISSETVDAEEVSFETSLRPQNLSQYIGQDKVKNNLTVFIEAATLRNEALDHVLLY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA V+A E+G   ++TSGP I + GDLA +LT+LE  DVLFIDEIHRLS  
Sbjct: 61  GPPGLGKTTLAMVIASEMGSQIKTTSGPAIERPGDLATILTSLEPGDVLFIDEIHRLSRA 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EEILYPAMED+ LD+++G GP+ARSV+++L  FTLI ATTR GLL+ PL+DRFG+   L
Sbjct: 121 IEEILYPAMEDYCLDIVIGTGPTARSVRLDLPPFTLIGATTRAGLLSAPLRDRFGVIDHL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  E L  IV R + +    + D  A EIA RSRGTPRIA RLL+RVRDFA+V    T
Sbjct: 181 EFYTEEQLTEIVLRTSNILDTKIDDLGAREIARRSRGTPRIANRLLKRVRDFAQVRGNGT 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +T ++A  AL  L +D  G D +D + L  I ++F GGPVG++TI+A + E R+ IED+ 
Sbjct: 241 VTEKLAKEALTLLQVDPRGLDTIDQKLLHTIIQSFRGGPVGLDTIAASIGEERETIEDMQ 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           EPY++Q GF+QRTPRGR++   A+ HLGI
Sbjct: 301 EPYLLQIGFLQRTPRGRIVTETAYNHLGI 329


>gi|312622644|ref|YP_004024257.1| holliday junction DNA helicase ruvb [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203111|gb|ADQ46438.1| Holliday junction DNA helicase RuvB [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 338

 Score =  351 bits (901), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 169/323 (52%), Positives = 227/323 (70%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           E LL    S ED     LRP+ LEE+ GQ +    +K+FIEAAK R E LDHVL  GPPG
Sbjct: 2   ERLLDNKFSVEDVHEESLRPKMLEEYIGQQKVKEKIKIFIEAAKKRKEPLDHVLLYGPPG 61

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLA ++A E+GV+ + TSGP I +AGDL A+LTN+ + ++LFIDEIHRL+  +EE+
Sbjct: 62  LGKTTLANIIANEMGVDIKVTSGPAIERAGDLVAILTNIGENNILFIDEIHRLNRTIEEV 121

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPAMED ++D+++G+GPSA+++++ L  FTLI ATTR GLL++PL+DRFGI  RL++Y 
Sbjct: 122 LYPAMEDKKVDIVIGKGPSAKTIRLTLPPFTLIGATTRAGLLSSPLRDRFGIIERLDYYT 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +E+L  IV R A +    +  EA  EIA RSRGTPR+A RLLRR+RD+A V H  +IT E
Sbjct: 182 VEELSQIVMRSASILKCDIEKEACIEIAKRSRGTPRVANRLLRRLRDYAMVKHTGSITYE 241

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +A + L    +D+ G D +D   L  I   FGGGPVG+ TI+A + E    IED+ EPY+
Sbjct: 242 VAKSGLEMFEVDEYGLDLVDRNILEAIVYKFGGGPVGLSTIAAAIGEDEGTIEDIYEPYL 301

Query: 305 IQQGFIQRTPRGRLLMPIAWQHL 327
           IQ+GF+ +T RGR+    A  H+
Sbjct: 302 IQEGFLVKTARGRVATQKAISHI 324


>gi|51892299|ref|YP_074990.1| Holliday junction DNA helicase RuvB [Symbiobacterium thermophilum
           IAM 14863]
 gi|68715427|sp|Q67Q97|RUVB_SYMTH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|51855988|dbj|BAD40146.1| Holliday junction DNA helicase RuvB [Symbiobacterium thermophilum
           IAM 14863]
          Length = 347

 Score =  351 bits (901), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 175/329 (53%), Positives = 236/329 (71%), Gaps = 1/329 (0%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M  E  +S +   EDA I   LRP+ L ++ GQ      L ++I AAK R E LDHVL  
Sbjct: 1   MSEERFVSGHRRPEDARIEETLRPQRLADYPGQERVKEQLSIYIAAAKKRGEPLDHVLLY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A E+GVN R TSGP I+  GDLAA+LT L + DVLF+DEIHRL+ +
Sbjct: 61  GPPGLGKTTLAHIIAHEMGVNLRITSGPAISHQGDLAAILTQLSEGDVLFVDEIHRLNRL 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE LYPAMEDF LD+++G+GP+AR+++++L RFTLI ATTR G LT+PL+DRFG+ ++L
Sbjct: 121 VEETLYPAMEDFALDIILGKGPAARTLRLDLPRFTLIGATTRYGALTSPLRDRFGVVLQL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  E+L  I+ R A++  + +    A EIA RSRGTPR+A RLLRR+RD+A+V     
Sbjct: 181 QFYSEEELTRILMRAARILNVPLDPGGAREIARRSRGTPRVANRLLRRLRDYAQVRADGV 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           ITR++ADA L  + +D MG D +D + L  I  ++GGGPVG++TI+A  SE  + IED+ 
Sbjct: 241 ITRDVADAGLRMMGVDAMGLDTVDHKVLLTIIHHYGGGPVGLDTIAAATSEEPETIEDVY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           EPY++Q GF+QRTPRGR+    A+++L I
Sbjct: 301 EPYLMQIGFLQRTPRGRVATRAAYEYLNI 329


>gi|229543703|ref|ZP_04432763.1| Holliday junction DNA helicase RuvB [Bacillus coagulans 36D1]
 gi|229328123|gb|EEN93798.1| Holliday junction DNA helicase RuvB [Bacillus coagulans 36D1]
          Length = 332

 Score =  351 bits (901), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 179/333 (53%), Positives = 234/333 (70%), Gaps = 3/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M DR  ++S   ++++    + LRP+TL ++ GQ E   NL VFIEAAK R E LDHVL 
Sbjct: 1   MEDR--VVSGEANEQEVSFEMSLRPQTLAQYIGQDEVKHNLAVFIEAAKGRRETLDHVLL 58

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA V+A E+G N R+TSGP I + GDLA++LT LE  +VLFIDEIHRL  
Sbjct: 59  YGPPGLGKTTLATVIANEMGANIRTTSGPAIERPGDLASVLTALEPGEVLFIDEIHRLPK 118

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            +EE+LYPAMEDF LD+++G+G  ARS++++L  FTLI ATTR G ++ PL+DRFG+  R
Sbjct: 119 AIEEVLYPAMEDFCLDIVIGKGSGARSIRLDLPPFTLIGATTRAGSVSAPLRDRFGVISR 178

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y    L  IV R A +   A+  E A EIA RSRGTPRIA RLLRRVRDFA+V    
Sbjct: 179 LEYYNEAQLAEIVLRTAGILETAIEPEGAAEIARRSRGTPRIANRLLRRVRDFAQVKGDG 238

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            +T EIA+ AL  L +DK G D +D + L  I   F GGPVG++TI+A + E R+ IED+
Sbjct: 239 KVTLEIANYALELLQVDKRGLDHIDHKLLKAIIERFRGGPVGLDTIAASIGEERETIEDV 298

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
            EPY++Q GF+QRTPRGR+  P+ + H  +++P
Sbjct: 299 YEPYLLQIGFLQRTPRGRVATPLCYAHFHMEVP 331


>gi|16800635|ref|NP_470903.1| Holliday junction DNA helicase RuvB [Listeria innocua Clip11262]
 gi|20140101|sp|Q92BI2|RUVB_LISIN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|16414054|emb|CAC96798.1| ruvB [Listeria innocua Clip11262]
 gi|313618793|gb|EFR90689.1| holliday junction DNA helicase RuvB [Listeria innocua FSL S4-378]
          Length = 335

 Score =  351 bits (901), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 181/329 (55%), Positives = 232/329 (70%), Gaps = 1/329 (0%)

Query: 2   MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD   + S  V  E+    + LRP+TL ++ GQ +  +NL VFIEAA  R EALDHVL  
Sbjct: 1   MDERIISSETVDAEEVSFETSLRPQTLSQYIGQDKVKNNLTVFIEAATLRNEALDHVLLY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA V+A E+G   ++TSGP I + GDLA +LT+LE  DVLFIDEIHRLS  
Sbjct: 61  GPPGLGKTTLAMVIASEMGSEIKTTSGPAIERPGDLATILTSLEPGDVLFIDEIHRLSRA 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EEILYPAMED+ LD+++G GP+ARSV+++L  FTLI ATTR GLL+ PL+DRFG+   L
Sbjct: 121 IEEILYPAMEDYCLDIVIGTGPTARSVRLDLPPFTLIGATTRAGLLSAPLRDRFGVIDHL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  E L  IV R + +    + D  A EIA RSRGTPRIA RLL+RVRDFA+V    T
Sbjct: 181 EFYTEEQLTEIVLRTSGILDTKIDDLGAREIARRSRGTPRIANRLLKRVRDFAQVRGNGT 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +T ++A  AL  L +D  G D +D + L  I ++F GGPVG++TI+A + E R+ IED+ 
Sbjct: 241 VTEKLAKEALTLLQVDPRGLDTIDQKLLHTIIQSFRGGPVGLDTIAASIGEERETIEDMQ 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           EPY++Q GF+QRTPRGR+    A+ HLGI
Sbjct: 301 EPYLLQIGFLQRTPRGRIATETAYNHLGI 329


>gi|283796453|ref|ZP_06345606.1| holliday junction DNA helicase RuvB [Clostridium sp. M62/1]
 gi|291075861|gb|EFE13225.1| holliday junction DNA helicase RuvB [Clostridium sp. M62/1]
          Length = 340

 Score =  351 bits (901), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 172/324 (53%), Positives = 234/324 (72%), Gaps = 1/324 (0%)

Query: 7   LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           +++ +V++ED  I + LRP+ L E+ GQ    S LK+FI+AAK+R E LDHVLF GPPGL
Sbjct: 14  IITTDVTEEDKKIETSLRPQLLSEYIGQERIKSTLKIFIDAAKSRKEPLDHVLFYGPPGL 73

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTL  ++A E+GVN + TSGP I K G++AA+L  L + DVLF+DEIHRL+  VEE+L
Sbjct: 74  GKTTLCGIIANEMGVNMKVTSGPAIEKPGEIAAILNGLSEGDVLFVDEIHRLNRQVEEVL 133

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           YPAMED+ +D+M+G+  SARS+++ L +FTL+ ATTR GLLT PL+DRFGI  +++FY  
Sbjct: 134 YPAMEDYAIDIMLGKDSSARSIRLELPKFTLVGATTRAGLLTAPLRDRFGIIQKMDFYTP 193

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
            +LKTIV R A +  + + +E A EIA RSRGTPR+A RLL+RVRDFA+V +   IT+ +
Sbjct: 194 AELKTIVMRSADVMQVKIEEEGAFEIARRSRGTPRLANRLLKRVRDFAQVKYDGVITKAV 253

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           AD AL  L +DK+G D  D   L  + + F GGPVG+ET++A L E    +ED+ EPY++
Sbjct: 254 ADFALDILDVDKLGLDNNDRAILNAMIQKFSGGPVGLETLAACLGEDAGTLEDVYEPYLL 313

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGI 329
             G I RTPRGR+    A+ HLG+
Sbjct: 314 MNGLINRTPRGRVATEAAYHHLGL 337


>gi|308234390|ref|ZP_07665127.1| Holliday junction DNA helicase RuvB [Atopobium vaginae DSM 15829]
 gi|328944206|ref|ZP_08241670.1| crossover junction ATP-dependent DNA helicase RuvB [Atopobium
           vaginae DSM 15829]
 gi|327491125|gb|EGF22900.1| crossover junction ATP-dependent DNA helicase RuvB [Atopobium
           vaginae DSM 15829]
          Length = 368

 Score =  351 bits (901), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 167/322 (51%), Positives = 236/322 (73%), Gaps = 1/322 (0%)

Query: 12  VSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           ++++D D+   LRP +L ++ GQ     NL+V I AAK R E LDHVLF GPPGLGKTTL
Sbjct: 45  LTEDDLDVERSLRPESLGDYCGQTRVRENLRVLISAAKDRGETLDHVLFSGPPGLGKTTL 104

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           A +VA E+G + ++TSGP IA+ GDLAA+LTNL++ DVLF+DEIHRL+  VEE+LYPAME
Sbjct: 105 ASIVAHEMGAHLKTTSGPAIARTGDLAAILTNLQEGDVLFVDEIHRLNHQVEEVLYPAME 164

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           DF LD+++G+GP+ARS+++++  FTLI ATTR GLLT PL+DRFGI  RL++Y +++L  
Sbjct: 165 DFFLDIVIGKGPAARSIRLDVPHFTLIGATTRTGLLTGPLRDRFGISYRLDYYSVDELAE 224

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           IV+R A +  + + D  A EIA RSRGTPR+A RLL+RVRD+A+V     I+ ++A  AL
Sbjct: 225 IVKRSAGILEVGIDDSGAQEIASRSRGTPRLANRLLKRVRDYAQVKAHGEISWDVASQAL 284

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
               ID+MG D +D + L+++ + FGG  VG+ TI++ + E    +ED+ EPY++Q+G +
Sbjct: 285 SFFEIDEMGLDWMDKKILSVLTQTFGGRAVGLTTIASAVGEDPATLEDVYEPYLLQRGLL 344

Query: 311 QRTPRGRLLMPIAWQHLGIDIP 332
            RTP+GR    +A+ HLG+  P
Sbjct: 345 IRTPQGRQATSLAFTHLGLHAP 366


>gi|282858660|ref|ZP_06267818.1| Holliday junction DNA helicase RuvB [Prevotella bivia JCVIHMP010]
 gi|282588578|gb|EFB93725.1| Holliday junction DNA helicase RuvB [Prevotella bivia JCVIHMP010]
          Length = 345

 Score =  351 bits (901), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 170/307 (55%), Positives = 224/307 (72%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP   ++F+GQ +   NL VF+EAAK R E LDH L  GPPGLGKTTL+ ++A ELGV 
Sbjct: 23  LRPLKFDDFSGQAKVVENLNVFVEAAKYRGEPLDHTLLHGPPGLGKTTLSNIIANELGVG 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS +VEE LY AMED+++D+M+ +G
Sbjct: 83  FKITSGPVLDKPGDLAGILTSLEPNDVLFIDEIHRLSPVVEEYLYSAMEDYRIDIMIDKG 142

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSARS++I+L+ FTL+ ATTR GLLT PL+ RFGI + L +Y+   ++ I++R A L  +
Sbjct: 143 PSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGINMHLEYYDTATIQRIIKRSAALLKV 202

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + DEAA EIA+RSRGTPRI   LLRRVRDFA+V    TIT EIA  +L  L ID+ G D
Sbjct: 203 PIIDEAAAEIALRSRGTPRICNSLLRRVRDFAQVKGNGTITPEIATMSLQALNIDQYGLD 262

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           ++D + L  I   F GGPVG+ TI+  + E    +E++ EP++I +GFI+RTPRGR+   
Sbjct: 263 EIDNKILLTIIDKFRGGPVGVSTIATAIGEDSGTVEEVYEPFLIMEGFIKRTPRGRVATQ 322

Query: 322 IAWQHLG 328
           +A+ HLG
Sbjct: 323 LAYDHLG 329


>gi|53711454|ref|YP_097446.1| Holliday junction DNA helicase RuvB [Bacteroides fragilis YCH46]
 gi|60679724|ref|YP_209868.1| Holliday junction DNA helicase RuvB [Bacteroides fragilis NCTC
           9343]
 gi|253564484|ref|ZP_04841941.1| Holliday junction DNA helicase RuvB [Bacteroides sp. 3_2_5]
 gi|265764853|ref|ZP_06093128.1| Holliday junction DNA helicase RuvB [Bacteroides sp. 2_1_16]
 gi|68715391|sp|Q650B4|RUVB_BACFR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|81317203|sp|Q5LIX0|RUVB_BACFN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|52214319|dbj|BAD46912.1| Holliday junction DNA helicase RuvB [Bacteroides fragilis YCH46]
 gi|60491158|emb|CAH05906.1| putative holliday junction DNA helicase [Bacteroides fragilis NCTC
           9343]
 gi|251948260|gb|EES88542.1| Holliday junction DNA helicase RuvB [Bacteroides sp. 3_2_5]
 gi|263254237|gb|EEZ25671.1| Holliday junction DNA helicase RuvB [Bacteroides sp. 2_1_16]
 gi|301161186|emb|CBW20724.1| putative holliday junction DNA helicase [Bacteroides fragilis 638R]
          Length = 342

 Score =  351 bits (901), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 176/322 (54%), Positives = 235/322 (72%), Gaps = 4/322 (1%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L SR    E+A    LRP + E+F GQ +   NL++F++AA+ RAEALDHVL  GPPGLG
Sbjct: 12  LTSRERDFENA----LRPLSFEDFNGQDKVVDNLRIFVKAARLRAEALDHVLLHGPPGLG 67

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTTL+ ++A ELGV F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS +VEE LY
Sbjct: 68  KTTLSNIIANELGVGFKVTSGPVLDKPGDLAGVLTSLEPNDVLFIDEIHRLSPVVEEYLY 127

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            AMED+++D+M+ +GPSARS++I+L+ FTL+ ATTR GLLT PL+ RFGI + L +Y+ +
Sbjct: 128 SAMEDYRIDIMIDKGPSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGINLHLEYYDDD 187

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
            L  I+ R A +  +  + +AA EIA RSRGTPRIA  LLRRVRDFA+V  + +I  EIA
Sbjct: 188 ILSNIISRSAGILDVPCSSQAAGEIASRSRGTPRIANALLRRVRDFAQVKGSGSIDTEIA 247

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           + AL  L IDK G D++D + L  I   F GGPVG+ TI+  L E    IE++ EP++I+
Sbjct: 248 NYALEALNIDKYGLDEIDNKILCTIIDKFKGGPVGLTTIATALGEDAGTIEEVYEPFLIK 307

Query: 307 QGFIQRTPRGRLLMPIAWQHLG 328
           +GF++RTPRGR +  +A++HLG
Sbjct: 308 EGFLKRTPRGREVTELAYKHLG 329


>gi|325268269|ref|ZP_08134902.1| crossover junction ATP-dependent DNA helicase RuvB [Prevotella
           multiformis DSM 16608]
 gi|324989411|gb|EGC21361.1| crossover junction ATP-dependent DNA helicase RuvB [Prevotella
           multiformis DSM 16608]
          Length = 344

 Score =  351 bits (901), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 172/307 (56%), Positives = 224/307 (72%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP    +F+GQ +   NL VF+EAAK R E LDH L  GPPGLGKTTL+ ++A ELGV 
Sbjct: 23  LRPLRFRDFSGQQKVVENLSVFVEAAKYRGEPLDHTLLHGPPGLGKTTLSNIIANELGVG 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           F+ TSGPV+ K GDLA +LT+LE  DV+FIDEIHRLS +VEE LY AMED+++D+M+ +G
Sbjct: 83  FKITSGPVLDKPGDLAGILTSLEPNDVIFIDEIHRLSPVVEEYLYSAMEDYRIDIMIDKG 142

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSARS++I+L+ FTL+ ATTR GLLT PL+ RFGI + L +Y+ E L+ I++R A+L  +
Sbjct: 143 PSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGINLHLEYYDPETLQRIIKRSAQLLKV 202

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + DEAA EIA RSRGTPRI   LLRRVRDFA+V    TIT EIA  +L  L IDK G D
Sbjct: 203 PIVDEAAAEIARRSRGTPRICNSLLRRVRDFAQVKGNGTITPEIAGLSLQSLNIDKFGLD 262

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           ++D + L  I   F GGPVG+ TI+  + E    +E++ EP++I +GFI+RTPRGR+   
Sbjct: 263 EIDNKILLTIIDKFRGGPVGVSTIATAIGEDSGTVEEVYEPFLIMEGFIKRTPRGRVATR 322

Query: 322 IAWQHLG 328
           +A+ HLG
Sbjct: 323 LAYTHLG 329


>gi|295091402|emb|CBK77509.1| Holliday junction DNA helicase, RuvB subunit [Clostridium cf.
           saccharolyticum K10]
          Length = 331

 Score =  351 bits (901), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 172/324 (53%), Positives = 234/324 (72%), Gaps = 1/324 (0%)

Query: 7   LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           +++ +V++ED  I + LRP+ L E+ GQ    S LK+FI+AAK+R E LDHVLF GPPGL
Sbjct: 5   IITTDVTEEDKKIETSLRPQLLSEYIGQERIKSTLKIFIDAAKSRKEPLDHVLFYGPPGL 64

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTL  ++A E+GVN + TSGP I K G++AA+L  L + DVLF+DEIHRL+  VEE+L
Sbjct: 65  GKTTLCGIIANEMGVNMKVTSGPAIEKPGEIAAILNGLSEGDVLFVDEIHRLNRQVEEVL 124

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           YPAMED+ +D+M+G+  SARS+++ L +FTL+ ATTR GLLT PL+DRFGI  +++FY  
Sbjct: 125 YPAMEDYAIDIMLGKDSSARSIRLELPKFTLVGATTRAGLLTAPLRDRFGIIQKMDFYTP 184

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
            +LKTIV R A +  + + +E A EIA RSRGTPR+A RLL+RVRDFA+V +   IT+ +
Sbjct: 185 AELKTIVMRSADVMQVKIEEEGAFEIARRSRGTPRLANRLLKRVRDFAQVKYDGVITKAV 244

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           AD AL  L +DK+G D  D   L  + + F GGPVG+ET++A L E    +ED+ EPY++
Sbjct: 245 ADFALDILDVDKLGLDNNDRAILNAMIQKFSGGPVGLETLAACLGEDAGTLEDVYEPYLL 304

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGI 329
             G I RTPRGR+    A+ HLG+
Sbjct: 305 MNGLINRTPRGRVATEAAYHHLGL 328


>gi|210635284|ref|ZP_03298480.1| hypothetical protein COLSTE_02411 [Collinsella stercoris DSM 13279]
 gi|210158445|gb|EEA89416.1| hypothetical protein COLSTE_02411 [Collinsella stercoris DSM 13279]
          Length = 356

 Score =  351 bits (901), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 170/329 (51%), Positives = 240/329 (72%), Gaps = 1/329 (0%)

Query: 3   DREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           D E  ++  ++ +D D+   LRP+ L+++ GQ     +LK+ IEAA++R E+LDHV+F G
Sbjct: 24  DNERFVTGELTSDDLDVERSLRPQRLDDYCGQDHIKQSLKILIEAAQSRGESLDHVIFSG 83

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA VVA E+G   ++TSGP IA+ GDLAA+LTNL+  DVLFIDEIHRL+  V
Sbjct: 84  PPGLGKTTLATVVANEMGAQIKTTSGPAIARTGDLAAILTNLQPGDVLFIDEIHRLNRQV 143

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILYPAMEDF LD+++G+GP+ARS+++++  FTL+ ATTR G+LT PL+DRFGI  RL+
Sbjct: 144 EEILYPAMEDFSLDIVIGKGPAARSIRLDIPHFTLVGATTRSGMLTGPLRDRFGISFRLD 203

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y IEDL  IV R A + G+ +  E+A E+A RSRGTPR+A RLL+RVRD+A+V    +I
Sbjct: 204 YYGIEDLADIVCRSAAILGVEIDRESAKEVASRSRGTPRLANRLLKRVRDYAQVKGEGSI 263

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
              IA  A+    ID++G D +D+R L  + + F G  VG+ T+++   E  + +ED+ E
Sbjct: 264 ELGIAQEAMAFFEIDELGLDWMDIRILETLCKTFRGRAVGLSTLASATGEDANTLEDVYE 323

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           PY++Q G I RTP+GR+  P A++HLG++
Sbjct: 324 PYLLQCGLIVRTPQGRMATPAAFEHLGME 352


>gi|254828234|ref|ZP_05232921.1| ruvB [Listeria monocytogenes FSL N3-165]
 gi|258600622|gb|EEW13947.1| ruvB [Listeria monocytogenes FSL N3-165]
          Length = 335

 Score =  351 bits (901), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 180/329 (54%), Positives = 232/329 (70%), Gaps = 1/329 (0%)

Query: 2   MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD   + S  V  E+    + LRP+ L ++ GQ +  +NL VFIEAA  R EALDHVL  
Sbjct: 1   MDERIISSETVDAEEVSFETSLRPQNLSQYIGQDKVKNNLTVFIEAATLRNEALDHVLLY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA V+A E+G   ++TSGP I + GDLA +LT+LE  DVLFIDEIHRLS  
Sbjct: 61  GPPGLGKTTLAMVIAAEMGSQIKTTSGPAIERPGDLATILTSLEPGDVLFIDEIHRLSRA 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EEILYPAMED+ LD+++G GP+ARSV+++L  FTLI ATTR GLL+ PL+DRFG+   L
Sbjct: 121 IEEILYPAMEDYCLDIVIGTGPTARSVRLDLPPFTLIGATTRAGLLSAPLRDRFGVIDHL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  E L  IV R + +    + D  A EIA RSRGTPRIA RLL+RVRDFA+V    T
Sbjct: 181 EFYTEEQLTEIVLRTSNILDTKIDDLGAREIARRSRGTPRIANRLLKRVRDFAQVRGNGT 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +T ++A  AL  L +D  G D +D + L  I ++F GGPVG++TI+A + E R+ IED+ 
Sbjct: 241 VTEKLAKEALTLLQVDPRGLDTIDQKLLHTIIQSFRGGPVGLDTIAASIGEERETIEDMQ 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           EPY++Q GF+QRTPRGR++   A+ HLGI
Sbjct: 301 EPYLLQIGFLQRTPRGRIVTETAYNHLGI 329


>gi|18310929|ref|NP_562863.1| Holliday junction DNA helicase B [Clostridium perfringens str. 13]
 gi|20140041|sp|Q8XJ14|RUVB_CLOPE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|18145611|dbj|BAB81653.1| holliday junction DNA helicase [Clostridium perfringens str. 13]
          Length = 346

 Score =  351 bits (900), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 169/307 (55%), Positives = 226/307 (73%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP  + E+ GQ +    L +FI+AA+ R EALDHV+  GPPGLGKTTLA ++A E+G N
Sbjct: 21  LRPEKINEYIGQDKVKERLNIFIKAAQRREEALDHVILYGPPGLGKTTLANIIANEMGGN 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGP I +AGDLAA+LT L   DVLFIDEIHRL+  VEEILYPAMED+ LD+++G+G
Sbjct: 81  LKITSGPAIERAGDLAAILTTLNTNDVLFIDEIHRLNRSVEEILYPAMEDYVLDIIIGKG 140

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            +++S++++L +FTLI ATTR+G+L++PL+DR G+   + +Y  E LK I+ R A++ G 
Sbjct: 141 AASKSIRLDLPKFTLIGATTRIGMLSSPLRDRLGVLCSMEYYTDEQLKEIIIRSAEILGC 200

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T+E A EIA RSRGTPRIA RLL+RVRDFAEV +   IT E A  +L  L +D  GFD
Sbjct: 201 HITEEGAFEIAKRSRGTPRIANRLLKRVRDFAEVLYDNEITEEAAKKSLEILEVDGEGFD 260

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           ++D + L  I  NF GGPVGIET++  + E  D IED+ EPY++Q+GFI RTPRGR+   
Sbjct: 261 RIDNKILEAIIDNFNGGPVGIETLAYFVGEELDTIEDVYEPYLLQKGFIVRTPRGRMATD 320

Query: 322 IAWQHLG 328
            A++HLG
Sbjct: 321 KAYKHLG 327


>gi|259502858|ref|ZP_05745760.1| crossover junction endoribonuclease subunit B [Lactobacillus antri
           DSM 16041]
 gi|259169225|gb|EEW53720.1| crossover junction endoribonuclease subunit B [Lactobacillus antri
           DSM 16041]
          Length = 342

 Score =  351 bits (900), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 172/333 (51%), Positives = 236/333 (70%), Gaps = 3/333 (0%)

Query: 3   DREGLLSRNVSQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           D++  +  + SQ++A+  +   LRP+TL ++ GQ +    L+V+IEAA+ R EALDHVL 
Sbjct: 5   DKQDNVLSDRSQDEAEEQIELTLRPQTLRDYIGQAQLKDKLRVYIEAAREREEALDHVLL 64

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA V+A E+ VN ++TSGP I K GDL ALL  L+  DVLFIDEIHRL  
Sbjct: 65  YGPPGLGKTTLAMVIAHEMAVNIKTTSGPAIEKPGDLVALLNELQPGDVLFIDEIHRLPK 124

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LY AMED+ +D++VGEGP+A  V   L  FTLI ATTR G+L+ PL+DRFGI   
Sbjct: 125 VVEEMLYSAMEDYYIDIVVGEGPTAHPVHFPLPPFTLIGATTRAGMLSAPLRDRFGIVEH 184

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           +N+Y  ++LK I+ R A++    + ++ A E+A+RSRGTPRIA RLL+RVRDFA+VAH +
Sbjct: 185 MNYYNQDELKQIIFRSARIFATRIEEQGAHELALRSRGTPRIANRLLKRVRDFAQVAHQQ 244

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I   I   AL  L +D  G D++D + L  +   + GGPVG++TI+A + E  + IE++
Sbjct: 245 AIGASIVKQALDLLQVDSRGLDEIDRKMLLTMINFYHGGPVGLKTIAANIGEETNTIEEM 304

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
            EPY+IQ G+I RTPRGR++ P A+ HLGI+ P
Sbjct: 305 YEPYLIQIGYISRTPRGRVVTPAAYDHLGINYP 337


>gi|253682370|ref|ZP_04863167.1| holliday junction DNA helicase RuvB [Clostridium botulinum D str.
           1873]
 gi|253562082|gb|EES91534.1| holliday junction DNA helicase RuvB [Clostridium botulinum D str.
           1873]
          Length = 337

 Score =  351 bits (900), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 179/335 (53%), Positives = 238/335 (71%), Gaps = 3/335 (0%)

Query: 1   MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M DR  ++S +  +ED D+   LRP  L E+ GQ +    L +FIEAAK R E+LDHVL 
Sbjct: 1   MEDR--IVSASYKREDFDVEHSLRPEKLTEYIGQSKVKEKLSIFIEAAKIRQESLDHVLL 58

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++ARE+G   + TSGP I +AGD+AA+LT+L D DVLFIDEIHRL+ 
Sbjct: 59  YGPPGLGKTTLANIIAREMGGTLKVTSGPAIERAGDMAAILTSLNDYDVLFIDEIHRLNR 118

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEEI+YPAMED  LD+++G+G +A+S++++L +FTLI ATTRVGLLT+PL+DRFG+   
Sbjct: 119 TVEEIMYPAMEDNVLDIVIGKGAAAKSIRLDLPKFTLIGATTRVGLLTSPLRDRFGVLSA 178

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           + FY  ++LK IV R +K+  +  T++AA EIA RSRGTPRIA R+L+RVRD+ +V    
Sbjct: 179 MEFYNEDELKEIVLRSSKILDVVTTEDAAFEIARRSRGTPRIANRILKRVRDYCDVKGNG 238

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I   IA +AL  L IDK GFD +D R L  I  NF GGPVG+ET++  + E  D I+D+
Sbjct: 239 IIDINIAQSALELLEIDKEGFDNIDNRILEAIIDNFKGGPVGLETLAYFIGEELDTIQDV 298

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
            EPY++Q+GFI R PRGR     A++HL  D   +
Sbjct: 299 YEPYLLQKGFIIRMPRGRKATEKAYKHLKRDFKEQ 333


>gi|295103888|emb|CBL01432.1| Holliday junction DNA helicase, RuvB subunit [Faecalibacterium
           prausnitzii SL3/3]
          Length = 351

 Score =  351 bits (900), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 170/318 (53%), Positives = 228/318 (71%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           D + + LRP+ LE++ GQ +A  NLK+++EAAK R E +DH+L  GPPGLGKTTLA ++A
Sbjct: 21  DNEENNLRPQHLEDYIGQEKAKQNLKIYLEAAKRRGEPVDHILLYGPPGLGKTTLAGIIA 80

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
            E+GV  R TSGP I K GDLAALLTNL++ DVLFIDEIHRLS  VEE+LYPA+ED+ LD
Sbjct: 81  NEMGVQIRITSGPAIEKPGDLAALLTNLQEGDVLFIDEIHRLSRQVEEVLYPALEDYALD 140

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           +M+G+GPSA+S++INL RFTL+ ATTR G +T PL+DRFG+ ++L  Y  ++L  I+ R 
Sbjct: 141 IMIGKGPSAQSIRINLPRFTLVGATTRAGQITGPLRDRFGVLLKLELYSPDELSRIIMRS 200

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255
           A +    +T E A E+A  SRGTPR+A R L+R+RDFA V     I R++A   L R+ +
Sbjct: 201 AGILDQPITPEGAYELAKCSRGTPRVANRFLKRIRDFATVLGDGIIDRDVALLGLKRMDV 260

Query: 256 DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR 315
           D +G D+LD   L  I   + GGPVG+ET++A L E    +EDL EPY++Q GF+ RTPR
Sbjct: 261 DALGLDELDRSLLRAIIEMYNGGPVGLETLAAALGEEAVTLEDLCEPYLMQMGFLTRTPR 320

Query: 316 GRLLMPIAWQHLGIDIPH 333
           GR    +A++HLG+  P 
Sbjct: 321 GRCATRLAYEHLGMKAPE 338


>gi|300727521|ref|ZP_07060912.1| holliday junction DNA helicase RuvB [Prevotella bryantii B14]
 gi|299775224|gb|EFI71825.1| holliday junction DNA helicase RuvB [Prevotella bryantii B14]
          Length = 344

 Score =  351 bits (900), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 175/324 (54%), Positives = 232/324 (71%), Gaps = 1/324 (0%)

Query: 9   SRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           + N+S  + +  + LRP    +F+GQ     NL+VF+EAAK R E LDH L  GPPGLGK
Sbjct: 9   NENISPAEKEFENALRPLQFNDFSGQQNVVENLRVFVEAAKYRGEPLDHTLLHGPPGLGK 68

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127
           TTL+ ++A ELGV F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS +VEE LY 
Sbjct: 69  TTLSNIIANELGVGFKITSGPVLDKPGDLAGILTSLEPNDVLFIDEIHRLSPVVEEYLYS 128

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           AMED+++D+M+ +GPSARS++I+L+ FTLI ATTR GLLT PL+ RFGI + L +Y  + 
Sbjct: 129 AMEDYRIDIMIDKGPSARSIQIDLNPFTLIGATTRSGLLTAPLRARFGINLHLQYYNPDT 188

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           L+ I++R + L  + + DEAA EI+ RSRGTPRIA  LLRRVRDFA+V    TIT EIA 
Sbjct: 189 LQRIIKRSSSLLNVPIEDEAAVEISRRSRGTPRIANALLRRVRDFAQVKGNGTITPEIAK 248

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
            AL  L ID+ G D+ D + L  I   F GGPVG+ TI+  + E    +E++ EP++I +
Sbjct: 249 FALQALNIDQYGLDETDNKILLAIIDKFRGGPVGLSTIATAIGEDTGTVEEVYEPFLIME 308

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDI 331
           GFI+RTPRGR+   +A++HLG +I
Sbjct: 309 GFIKRTPRGRMATKLAFEHLGRNI 332


>gi|229814936|ref|ZP_04445274.1| hypothetical protein COLINT_01979 [Collinsella intestinalis DSM
           13280]
 gi|229809423|gb|EEP45187.1| hypothetical protein COLINT_01979 [Collinsella intestinalis DSM
           13280]
          Length = 355

 Score =  351 bits (900), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 170/327 (51%), Positives = 241/327 (73%), Gaps = 1/327 (0%)

Query: 5   EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E  ++  ++ +D D+   LRP+ LE++ GQ     +L++ IEAA++R E+LDHV+F GPP
Sbjct: 25  ERFVTGELTSDDLDVERGLRPQRLEDYCGQEHIKQSLRILIEAAQSRGESLDHVIFSGPP 84

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA VVA E+G   ++TSGP IA+ GDLAA+LTNL+  DVLFIDEIHRL+  VEE
Sbjct: 85  GLGKTTLAAVVANEMGAQIKTTSGPAIARTGDLAAILTNLQPGDVLFIDEIHRLNRQVEE 144

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILYPAMEDF LD+++G+GP+ARS+++++ RFTL+ ATTR G+LT PL+DRFGI  RL++Y
Sbjct: 145 ILYPAMEDFSLDIVIGKGPAARSIRLDIPRFTLVGATTRSGMLTGPLRDRFGISYRLDYY 204

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            IEDL  IV R + + G+++  E+A EIA RSRGTPR+A RLL+RVRD+A+V    +I  
Sbjct: 205 GIEDLADIVCRSSSILGVSIDRESAKEIASRSRGTPRLANRLLKRVRDYAQVRGEGSIEL 264

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
            IA  A+    ID++G D +D+R L  + + F G  VG+ T+++   E  + +ED+ EPY
Sbjct: 265 GIAQEAMRFFEIDELGLDWMDIRILETLCKTFRGRAVGLSTLASATGEDANTLEDVYEPY 324

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGID 330
           ++Q G I RTP+GR+  P A++HLG++
Sbjct: 325 LLQCGLIVRTPQGRMATPAAFEHLGME 351


>gi|312870459|ref|ZP_07730579.1| Holliday junction DNA helicase RuvB [Lactobacillus oris PB013-T2-3]
 gi|311094016|gb|EFQ52340.1| Holliday junction DNA helicase RuvB [Lactobacillus oris PB013-T2-3]
          Length = 340

 Score =  350 bits (899), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 171/335 (51%), Positives = 238/335 (71%), Gaps = 3/335 (0%)

Query: 1   MMDREGLLSRNVSQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M +++  +  + SQ++A+  +   LRP+ L+++ GQ +  + L+V+I+AAK R EALDHV
Sbjct: 1   MNEKQNDVLSDQSQDEAEEQIELTLRPQNLQDYIGQAQLKNKLRVYIKAAKEREEALDHV 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTLA V+A E+ VN ++TSGP I K GDL ALL  L+  DVLFIDEIHRL
Sbjct: 61  LLYGPPGLGKTTLAMVIAHEMAVNIKTTSGPAIEKPGDLVALLNELQPGDVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             +VEE+LY AMED+ +D++VGEGP+A  V   L  FTLI ATTR G+L+ PL+DRFGI 
Sbjct: 121 PKVVEEMLYSAMEDYYIDIVVGEGPTAHPVHFPLPPFTLIGATTRAGMLSAPLRDRFGIV 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
             +N+Y  ++LK I+ R A++    + ++ A E+A+RSRGTPRIA RLL+RVRDFA+VAH
Sbjct: 181 EHMNYYNQDELKQIIFRSARIFDTQIEEQGAHELALRSRGTPRIANRLLKRVRDFAQVAH 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
            + I   I   AL  L +D  G D++D + L  +   + GGPVG++TI+A + E  + IE
Sbjct: 241 RQAIDAAIVKQALDLLQVDSRGLDEIDRKMLLTMINFYQGGPVGLKTIAANIGEETNTIE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++ EPY+IQ G+I RTPRGR++ P A+ HLGI+ P
Sbjct: 301 EMYEPYLIQIGYISRTPRGRVVTPAAYDHLGINYP 335


>gi|255020125|ref|ZP_05292195.1| Holliday junction DNA helicase RuvB [Acidithiobacillus caldus ATCC
           51756]
 gi|254970418|gb|EET27910.1| Holliday junction DNA helicase RuvB [Acidithiobacillus caldus ATCC
           51756]
          Length = 345

 Score =  350 bits (899), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 178/332 (53%), Positives = 235/332 (70%), Gaps = 1/332 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M++R G LS      D     LRPR L+E+ GQ     +L +FI+AA+ R EALDHVL  
Sbjct: 1   MVER-GPLSLEEDGSDKLDRALRPRHLQEYLGQARLRDSLALFIDAARGRGEALDHVLLF 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A+E+G   + TSGP++ K GDLAA+LTNL+  DVLF+DEIHRLS +
Sbjct: 60  GPPGLGKTTLAHIIAQEMGAGLKVTSGPILDKPGDLAAILTNLQPFDVLFVDEIHRLSPV 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILYPA+ED++LD+++GEGPSARS+KI L  FTLI ATTR GLLT+PL+DRFGI   L
Sbjct: 120 VEEILYPALEDYELDILIGEGPSARSIKIALPPFTLIGATTRAGLLTSPLRDRFGISFHL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY +++L  IV R A++         A EIA RSRGTPRIA RLLRRVRD+A+V    T
Sbjct: 180 EFYSVDELAQIVSRSARILQTPFDAAGAREIARRSRGTPRIANRLLRRVRDYAQVRGNGT 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I    A AAL  + +D+ GFD  D + L  + + FGGGPVG+E+++A + E R  IE+++
Sbjct: 240 IDEATAQAALRLMEVDEYGFDGQDRKLLQAVIQRFGGGPVGVESLAAAIGEERGTIEEVL 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EP++IQ+G++ RTPRGR     ++  LG+  P
Sbjct: 300 EPFLIQRGYLVRTPRGRCATQQSYLALGLPCP 331


>gi|302386616|ref|YP_003822438.1| Holliday junction DNA helicase RuvB [Clostridium saccharolyticum
           WM1]
 gi|302197244|gb|ADL04815.1| Holliday junction DNA helicase RuvB [Clostridium saccharolyticum
           WM1]
          Length = 332

 Score =  350 bits (899), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 177/324 (54%), Positives = 243/324 (75%), Gaps = 1/324 (0%)

Query: 7   LLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           +++  V++ED  I   LRP+ LEE+ GQ +  +NLKV+I+AAKAR E+LDHVLF GPPGL
Sbjct: 5   IITTEVTEEDKRIEPNLRPKYLEEYIGQEKIRTNLKVYIDAAKARGESLDHVLFYGPPGL 64

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTL+ ++A E+GVN + TSGP I K G++AA+L NL++ DVLF+DEIHRL+  VEE+L
Sbjct: 65  GKTTLSAIIANEMGVNMKVTSGPAIEKPGEMAAILNNLQEGDVLFVDEIHRLNRQVEEVL 124

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           YPAMEDF +D+M+G+  SARS++++L +FTL+ ATTR GLLT PL+DRFG+  +L FY  
Sbjct: 125 YPAMEDFAIDIMLGKDSSARSIRLDLPKFTLVGATTRAGLLTAPLRDRFGVVQKLEFYTP 184

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           ++LK IV R A++  + + +E A EIA RSRGTPR+A RLL+RVRDFA++ +  TIT+E+
Sbjct: 185 QELKIIVCRSARVLQVEIEEEGAAEIAKRSRGTPRLANRLLKRVRDFAQIKYNGTITKEV 244

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           AD AL  L +DK+G D  D   LT +   F GGPVG++T++A L E    +ED+ EPY++
Sbjct: 245 ADFALDILDVDKLGLDCNDRAILTTMIEKFAGGPVGLDTLAASLGEDAGTLEDVYEPYLL 304

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGI 329
             GFI RT RGR+    A++HLGI
Sbjct: 305 MNGFINRTSRGRVATERAYEHLGI 328


>gi|88607797|ref|YP_504790.1| Holliday junction DNA helicase B [Anaplasma phagocytophilum HZ]
 gi|123736453|sp|Q2GLG1|RUVB_ANAPZ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|88598860|gb|ABD44330.1| holliday junction DNA helicase RuvB [Anaplasma phagocytophilum HZ]
          Length = 329

 Score =  350 bits (899), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 178/313 (56%), Positives = 223/313 (71%), Gaps = 2/313 (0%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           ED     LRP  +EEF GQ E   NLKVFI++A  R   LDHVL  GPPGLGKTTLA ++
Sbjct: 13  EDERNFALRPSLIEEFVGQSEIIENLKVFIKSAYERRATLDHVLLYGPPGLGKTTLAHII 72

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A+EL V+ RSTSGP+++KAGDLAA+LTNL+  DVLFIDEIHRL   +EEILY AMED  L
Sbjct: 73  AKELKVSLRSTSGPLLSKAGDLAAILTNLQPMDVLFIDEIHRLHRNIEEILYSAMEDCCL 132

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D++VGEG  AR+++I+L  FTL+ ATTR GL++NPL+DRFGIP+ L FY +E+L  +++R
Sbjct: 133 DIVVGEGCGARTLRIDLPAFTLVGATTRFGLISNPLRDRFGIPLHLEFYSVEELMLVIKR 192

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A +    + D  A EIA RSRGTPRIA RL RRVRDF  V     I    AD+AL  L 
Sbjct: 193 AAHVICTDIDDSGAYEIASRSRGTPRIALRLFRRVRDFMVVERQSIIDNHFADSALFNLG 252

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +DK G D++D++YL+ I        VGIETI+A LSE    IE+ IEPY+++ GFIQRTP
Sbjct: 253 VDKSGLDKMDIKYLSFIYE--AKNAVGIETIAAALSEDVGNIEETIEPYLLKIGFIQRTP 310

Query: 315 RGRLLMPIAWQHL 327
           RGR+L   A +HL
Sbjct: 311 RGRILTTKAIEHL 323


>gi|89099001|ref|ZP_01171881.1| Holliday junction DNA helicase B [Bacillus sp. NRRL B-14911]
 gi|89086405|gb|EAR65526.1| Holliday junction DNA helicase B [Bacillus sp. NRRL B-14911]
          Length = 333

 Score =  350 bits (899), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 172/311 (55%), Positives = 226/311 (72%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+TL ++ GQ +   NL+VFI+AA+ R E LDHVL  GPPGLGKTTLA ++A E+GVN
Sbjct: 21  LRPQTLRQYIGQDKVKENLEVFIQAARIRGETLDHVLLYGPPGLGKTTLASIIANEMGVN 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R+T+GP I + GDLAA+LT LE  DVLFIDEIHRL   +EE+LYPAMEDF LD+++G+G
Sbjct: 81  LRTTAGPAIERPGDLAAILTALEPGDVLFIDEIHRLPRSIEEVLYPAMEDFCLDIVIGKG 140

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSARSV+++L  FTL+ ATTR G ++ PL+DRFG+  RL +Y    LK IV R A +   
Sbjct: 141 PSARSVRLDLPPFTLVGATTRAGSVSAPLRDRFGVLCRLEYYNESQLKNIVSRTADVLET 200

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + D AA EIA RSRGTPRIA RLLRRVRDFA+V    +I   +A  +L  L +D++G D
Sbjct: 201 GIDDLAASEIARRSRGTPRIANRLLRRVRDFAQVKGDGSIDAALAHDSLELLQVDRLGLD 260

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  I   F GGPVG+ETI+A + E    IED+ EPY++Q GF+QRTPRGR++  
Sbjct: 261 HIDHKLLRGIIEKFRGGPVGLETIAATIGEESHTIEDVYEPYLLQIGFLQRTPRGRIVTH 320

Query: 322 IAWQHLGIDIP 332
           + + HL +++P
Sbjct: 321 LVYHHLNLELP 331


>gi|319900509|ref|YP_004160237.1| Holliday junction DNA helicase subunit RuvB [Bacteroides helcogenes
           P 36-108]
 gi|319415540|gb|ADV42651.1| Holliday junction DNA helicase subunit RuvB [Bacteroides helcogenes
           P 36-108]
          Length = 344

 Score =  350 bits (899), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 178/331 (53%), Positives = 240/331 (72%), Gaps = 4/331 (1%)

Query: 2   MDREGLLSRN---VSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M++E    RN   +S ++ D  + LRP   E+F+GQ +   NL++F++AA+ R EALDHV
Sbjct: 1   MEQEDFDIRNQQQLSSKERDFENALRPLNFEDFSGQDKVVDNLRIFVKAARLRGEALDHV 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTL+ ++A ELGV F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRL
Sbjct: 61  LLHGPPGLGKTTLSNIIANELGVGFKITSGPVLDKPGDLAGVLTSLEPNDVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           S IVEE LY AMED+++D+M+ +GPSARS++I+LS FTL+ ATTR GLLT PL+ RFGI 
Sbjct: 121 SPIVEEYLYSAMEDYRIDIMIDKGPSARSIQIDLSPFTLVGATTRSGLLTAPLRARFGIN 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
           + L +Y+ E L  I++R + +  +  +  AA EIA RSRGTPRIA  LLRRVRDFA+V  
Sbjct: 181 MHLEYYDDEVLSGIIRRSSGILDVPCSTRAAAEIASRSRGTPRIANALLRRVRDFAQVKG 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
           + +I  EIA+ AL  L IDK G D++D + L  I   F GGPVG+ TI+  L E    IE
Sbjct: 241 SGSIDTEIANYALEALNIDKYGLDEIDNKILCTIIDKFKGGPVGLTTIATALGEDAGTIE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
           ++ EP++I++GF++RTPRGR +  +A++HLG
Sbjct: 301 EVYEPFLIKEGFMKRTPRGREVTELAYKHLG 331


>gi|187933032|ref|YP_001885222.1| Holliday junction DNA helicase RuvB [Clostridium botulinum B str.
           Eklund 17B]
 gi|238691635|sp|B2TMZ2|RUVB_CLOBB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|187721185|gb|ACD22406.1| Holliday junction DNA helicase RuvB [Clostridium botulinum B str.
           Eklund 17B]
          Length = 344

 Score =  350 bits (899), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 173/315 (54%), Positives = 232/315 (73%), Gaps = 1/315 (0%)

Query: 15  EDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           ED +  L LRP+ + E+ GQ +    L +FI+AA+ R EALDHVL  GPPGLGKTTLA +
Sbjct: 12  EDGNSELSLRPQKINEYIGQDKVKERLNIFIKAARNRKEALDHVLLYGPPGLGKTTLANI 71

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +A+E+  + + TSGP I +AGDLAA+LT L+D DVLFIDEIHRL+  VEEILYPAMED+ 
Sbjct: 72  IAKEMTGDLKITSGPAIERAGDLAAILTTLKDYDVLFIDEIHRLNRSVEEILYPAMEDYA 131

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           LD+++G+G +A+S++++L +FTLI ATTR+G+LT+PL+DRFG+   + +Y+   LK IV 
Sbjct: 132 LDIVIGKGAAAKSIRLDLPKFTLIGATTRIGMLTSPLRDRFGVLCAMEYYDETQLKEIVI 191

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A + G  +T+E A EIA RSRGTPRIA RLL+RVRD++EV   K I+ + A  AL  L
Sbjct: 192 RSAAVFGCKITEEGALEIASRSRGTPRIANRLLKRVRDYSEVKSNKVISLKEARDALELL 251

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D  GFD++D + L  I  NF GGPVGIET+S  + E    IED+ EPY++Q+GFI RT
Sbjct: 252 EVDNQGFDKVDNKILEAIIDNFNGGPVGIETLSYFIGEELGTIEDVYEPYLLQKGFIVRT 311

Query: 314 PRGRLLMPIAWQHLG 328
           PRGR+    A++HLG
Sbjct: 312 PRGRIASDKAYKHLG 326


>gi|328953596|ref|YP_004370930.1| Holliday junction ATP-dependent DNA helicase ruvB [Desulfobacca
           acetoxidans DSM 11109]
 gi|328453920|gb|AEB09749.1| Holliday junction ATP-dependent DNA helicase ruvB [Desulfobacca
           acetoxidans DSM 11109]
          Length = 359

 Score =  350 bits (899), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 179/328 (54%), Positives = 237/328 (72%), Gaps = 1/328 (0%)

Query: 1   MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M ++E  +S     ED  + + LRPR+L EF GQ E   +L++ I AAK R+EALDH+L 
Sbjct: 18  MEEQERFVSSRRHPEDLGLEIGLRPRSLREFVGQDEVKRSLELAITAAKGRSEALDHILL 77

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            G PGLGKTTLA ++A+ELG   R+TSGPVI + GDLAALLTN +  DVLFIDEIHRL  
Sbjct: 78  HGHPGLGKTTLATIIAQELGAGLRTTSGPVIERPGDLAALLTNQKPGDVLFIDEIHRLPH 137

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED++LDL++G+GP AR++++++ RFTL+ ATTR GLLT  L+DRFG+ +R
Sbjct: 138 VVEEVLYPAMEDYKLDLIIGQGPGARAIRLDIPRFTLVGATTRAGLLTPALRDRFGLMLR 197

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           + FY  + L+ IV R A    + +    A EIA RSRGTPRIA RLL+RVRDFA+V    
Sbjct: 198 VEFYHPDHLQAIVTRSAGALQIDIEVAGAAEIARRSRGTPRIANRLLKRVRDFAQVHGDG 257

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            ITR+IADAAL  L +D  GFD++D R L  I   F GGPVG++T++A L E RD +ED+
Sbjct: 258 RITRQIADAALNLLEVDNRGFDRMDRRILLTIIEKFDGGPVGVDTLAAALCEERDTLEDV 317

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHL 327
            EP++IQ GF+ RTPRGR+   +A ++ 
Sbjct: 318 YEPFLIQCGFLNRTPRGRVATRLAQEYF 345


>gi|227544209|ref|ZP_03974258.1| crossover junction endoribonuclease subunit B [Lactobacillus
           reuteri CF48-3A]
 gi|300908205|ref|ZP_07125671.1| crossover junction ATP-dependent DNA helicase RuvB [Lactobacillus
           reuteri SD2112]
 gi|227185802|gb|EEI65873.1| crossover junction endoribonuclease subunit B [Lactobacillus
           reuteri CF48-3A]
 gi|300894632|gb|EFK87988.1| crossover junction ATP-dependent DNA helicase RuvB [Lactobacillus
           reuteri SD2112]
          Length = 338

 Score =  350 bits (898), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 172/334 (51%), Positives = 239/334 (71%), Gaps = 2/334 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M +  G+LS + S +E+  + + LRP+ L E+ GQ +    L+V+I+AA++R EALDHVL
Sbjct: 1   MENDHGILSDHPSGEEENQVEITLRPQKLREYIGQPKIKHELEVYIKAAQSREEALDHVL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA V+A E+GVN ++TSGP I K GDL ALL  L+  DVLF+DEIHRL 
Sbjct: 61  LYGPPGLGKTTLAMVIANEMGVNIKTTSGPAIEKPGDLVALLNELKPGDVLFVDEIHRLP 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            +VEE+LY AMED+ +D+++GEGP+A  V   L  FTLI ATTR G+L+ PL+DRFGI  
Sbjct: 121 KVVEEMLYSAMEDYYIDIVIGEGPTAHPVHFPLPPFTLIGATTRAGMLSAPLRDRFGIVE 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
            +N+Y  ++L  I+ R AK+   ++ +E A E+++RSRGTPRIA RLL+RVRDFA+VA  
Sbjct: 181 HMNYYTQDELTKIIFRSAKIFHTSIQNEGAHELSLRSRGTPRIANRLLKRVRDFAQVAGK 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
           ++I   I   AL  L +D  G D++D + L  +   + GGPVG++TI+A + E  + IE+
Sbjct: 241 QSIDSAIVKQALSLLQVDDRGLDEIDRKMLLTMINFYHGGPVGLKTIAANIGEETNTIEE 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           + EPY++Q GFI RTPRGRL+ P A++HLGI+ P
Sbjct: 301 MYEPYLLQIGFISRTPRGRLVTPTAYEHLGIEYP 334


>gi|299822807|ref|ZP_07054693.1| crossover junction ATP-dependent DNA helicase RuvB [Listeria grayi
           DSM 20601]
 gi|299816336|gb|EFI83574.1| crossover junction ATP-dependent DNA helicase RuvB [Listeria grayi
           DSM 20601]
          Length = 337

 Score =  350 bits (898), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 182/321 (56%), Positives = 227/321 (70%), Gaps = 1/321 (0%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           S N  +E  ++SL RP+ L  + GQ +   NLK+FIEAAK R EALDHVL  GPPGLGKT
Sbjct: 12  SVNPEEESFEMSL-RPQLLAHYIGQDKVKDNLKIFIEAAKKRNEALDHVLLYGPPGLGKT 70

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           TLA V+A E+G   R+TSGP I + GDLA +LT+LE  DVLFIDEIHRLS  VEEILYPA
Sbjct: 71  TLAMVIANEMGAGIRTTSGPAIERPGDLATILTSLEPGDVLFIDEIHRLSRTVEEILYPA 130

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           MED+ +D+++G GP+A+SV+++L  FTLI ATTR G L+ PL+DRFG+   L FY    L
Sbjct: 131 MEDYFIDIVIGNGPTAKSVRLDLPPFTLIGATTRAGQLSAPLRDRFGVIDHLEFYTEAQL 190

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           + I+ R A +    V    A EIA RSRGTPRIA RLL+RVRDFA+V     +T  +A  
Sbjct: 191 EAIITRTASILDTEVDVPGAEEIARRSRGTPRIANRLLKRVRDFADVKADGYVTERLAKE 250

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL  L +D  G D +D R L  I  +FGGGPVGIETI+A + E R+ IED+ EPY++Q G
Sbjct: 251 ALELLRVDPRGLDTIDQRLLQTIIHSFGGGPVGIETIAASIGEERETIEDMQEPYLLQIG 310

Query: 309 FIQRTPRGRLLMPIAWQHLGI 329
           F+QRTPRGRL+   A+ HLGI
Sbjct: 311 FLQRTPRGRLVTERAYNHLGI 331


>gi|46907760|ref|YP_014149.1| Holliday junction DNA helicase RuvB [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|226224133|ref|YP_002758240.1| Holliday junction DNA helicase RuvB [Listeria monocytogenes
           Clip81459]
 gi|254824409|ref|ZP_05229410.1| holliday junction DNA helicase RuvB [Listeria monocytogenes FSL
           J1-194]
 gi|254852156|ref|ZP_05241504.1| holliday junction DNA helicase RuvB [Listeria monocytogenes FSL
           R2-503]
 gi|254931467|ref|ZP_05264826.1| ruvB [Listeria monocytogenes HPB2262]
 gi|254992898|ref|ZP_05275088.1| Holliday junction DNA helicase RuvB [Listeria monocytogenes FSL
           J2-064]
 gi|255520700|ref|ZP_05387937.1| Holliday junction DNA helicase RuvB [Listeria monocytogenes FSL
           J1-175]
 gi|300764801|ref|ZP_07074791.1| holliday junction DNA helicase RuvB [Listeria monocytogenes FSL
           N1-017]
 gi|68715516|sp|Q71ZD8|RUVB_LISMF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|259495672|sp|C1KVH9|RUVB_LISMC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|46881029|gb|AAT04326.1| holliday junction DNA helicase RuvB [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|225876595|emb|CAS05304.1| Putative Holliday junction DNA helicase RuvB [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|258605459|gb|EEW18067.1| holliday junction DNA helicase RuvB [Listeria monocytogenes FSL
           R2-503]
 gi|293583019|gb|EFF95051.1| ruvB [Listeria monocytogenes HPB2262]
 gi|293593644|gb|EFG01405.1| holliday junction DNA helicase RuvB [Listeria monocytogenes FSL
           J1-194]
 gi|300514477|gb|EFK41534.1| holliday junction DNA helicase RuvB [Listeria monocytogenes FSL
           N1-017]
 gi|328465568|gb|EGF36797.1| Holliday junction DNA helicase RuvB [Listeria monocytogenes 1816]
 gi|328474892|gb|EGF45692.1| Holliday junction DNA helicase RuvB [Listeria monocytogenes 220]
 gi|332311974|gb|EGJ25069.1| Holliday junction ATP-dependent DNA helicase ruvB [Listeria
           monocytogenes str. Scott A]
          Length = 335

 Score =  350 bits (897), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 180/329 (54%), Positives = 231/329 (70%), Gaps = 1/329 (0%)

Query: 2   MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD   + S  V  E+    + LRP+ L ++ GQ +  +NL VFIEAA  R EALDHVL  
Sbjct: 1   MDERIISSETVDAEEVSFETSLRPQNLSQYIGQDKVKNNLTVFIEAATLRNEALDHVLLY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA V+A E+G   ++TSGP I + GDLA +LT+LE  DVLFIDEIHRLS  
Sbjct: 61  GPPGLGKTTLAMVIAAEMGSQIKTTSGPAIERPGDLATILTSLEPGDVLFIDEIHRLSRA 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EEILYPAMED+ LD+++G GP+ARSV+++L  FTLI ATTR GLL+ PL+DRFG+   L
Sbjct: 121 IEEILYPAMEDYCLDIVIGTGPTARSVRLDLPPFTLIGATTRAGLLSAPLRDRFGVIDHL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  E L  IV R + +    + D  A EIA RSRGTPRIA RLL+RVRDFA+V    T
Sbjct: 181 EFYTEEQLTEIVLRTSNILDTKIDDLGAREIARRSRGTPRIANRLLKRVRDFAQVRGNGT 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +T ++A  AL  L +D  G D +D + L  I ++F GGPVG++TI+A + E R+ IED+ 
Sbjct: 241 VTEKLAKEALTLLQVDPRGLDTIDQKLLHTIIQSFRGGPVGLDTIAASIGEERETIEDMQ 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           EPY++Q GF+QRTPRGR+    A+ HLGI
Sbjct: 301 EPYLLQIGFLQRTPRGRIATETAYNHLGI 329


>gi|218961946|ref|YP_001741721.1| Holliday junction helicase, subunit B [Candidatus Cloacamonas
           acidaminovorans]
 gi|167730603|emb|CAO81515.1| Holliday junction helicase, subunit B [Candidatus Cloacamonas
           acidaminovorans]
          Length = 338

 Score =  350 bits (897), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 170/322 (52%), Positives = 233/322 (72%), Gaps = 3/322 (0%)

Query: 11  NVSQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           N  + + D+ L   LRPRTL+EF GQ      L + I+AAK R E+LDH+L  GPPGLGK
Sbjct: 7   NPDKLNEDVELDRALRPRTLKEFIGQTHIKELLDISIKAAKLRGESLDHILLYGPPGLGK 66

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127
           TTLA ++ARE+GVN   +SGPVI K  DLA +LTNL+  + LFIDEIHRLS I+EE +YP
Sbjct: 67  TTLAGIIAREMGVNITVSSGPVIEKPSDLAGILTNLQRHETLFIDEIHRLSHIIEEYIYP 126

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           AMEDF++++++  GP++R++KI L  FTL+ ATTR GLLT PL+DRFGI +RL++Y+ E 
Sbjct: 127 AMEDFEMEIILDSGPNSRTLKIPLEHFTLVGATTRAGLLTPPLRDRFGIILRLDYYDQES 186

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           +  I++R A+L  +   D+   EIA RSRGTPRIA RLLRRVRD+A++     IT +IA 
Sbjct: 187 IAQIIRRSARLLNIPTEDDGVQEIARRSRGTPRIANRLLRRVRDYAQIKGEGIITLDIAL 246

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           +AL  L +D  G D++D R LT I  N+ GGPVGI+TI+  + E    IE++ EPY++QQ
Sbjct: 247 SALQMLQVDNAGLDEMDKRILTTIIENYNGGPVGIKTIATAIGEDSGTIEEIFEPYLVQQ 306

Query: 308 GFIQRTPRGRLLMPIAWQHLGI 329
           GF++R+P+GR +   A++HLG+
Sbjct: 307 GFLERSPQGRKVTFKAYKHLGL 328


>gi|261878859|ref|ZP_06005286.1| crossover junction endoribonuclease subunit B [Prevotella bergensis
           DSM 17361]
 gi|270334538|gb|EFA45324.1| crossover junction endoribonuclease subunit B [Prevotella bergensis
           DSM 17361]
          Length = 343

 Score =  350 bits (897), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 174/317 (54%), Positives = 227/317 (71%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
            S E    + LRP    +F GQ +   NL+VF+EAAK R E LDH L  GPPGLGKTTL+
Sbjct: 13  TSNEKEFENALRPLCFGDFNGQQKVVENLQVFVEAAKYRGEPLDHTLLYGPPGLGKTTLS 72

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            ++A ELGV F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRL  +VEE LY AMED
Sbjct: 73  NIIANELGVGFKITSGPVLDKPGDLAGILTSLEPSDVLFIDEIHRLQPVVEEYLYSAMED 132

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           +++D+M+ +GPSARS++I+L+ FTLI ATTR G+LT PL+ RFGI + L +Y+ E L  I
Sbjct: 133 YRIDIMIDKGPSARSIQIDLNPFTLIGATTRSGMLTAPLRARFGINMHLEYYDPETLTRI 192

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           ++R A+L  + V DEAA EIA RSRGTPR+A  LLRRVRDFA+V    TIT +IA  +L 
Sbjct: 193 IRRSAQLLKVPVDDEAAMEIARRSRGTPRVANGLLRRVRDFAQVKGNGTITTDIAQLSLQ 252

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L ID+ G D++D + LT I   F GGPVG+ TI+  + E    +E++ EP++I +GFI+
Sbjct: 253 ALNIDQYGLDEIDNKILTTIIDKFRGGPVGVSTIATAIGEDAGTVEEVYEPFLIMEGFIK 312

Query: 312 RTPRGRLLMPIAWQHLG 328
           RTPRGR+   +A+ HLG
Sbjct: 313 RTPRGRMATRLAYDHLG 329


>gi|188589876|ref|YP_001920352.1| Holliday junction DNA helicase RuvB [Clostridium botulinum E3 str.
           Alaska E43]
 gi|238689662|sp|B2V338|RUVB_CLOBA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|188500157|gb|ACD53293.1| Holliday junction DNA helicase RuvB [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 344

 Score =  350 bits (897), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 172/315 (54%), Positives = 231/315 (73%), Gaps = 1/315 (0%)

Query: 15  EDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           ED +  L LRP+ + E+ GQ +    L +FI+AAK R EALDHVL  GPPGLGKTTLA +
Sbjct: 12  EDGNSELSLRPQKINEYIGQDKVKERLNIFIKAAKNRKEALDHVLLYGPPGLGKTTLANI 71

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +A+E+  + + TSGP I +AGDLAA+LT L+D DVLFIDEIHRL+  VEEILYPAMED+ 
Sbjct: 72  IAKEMTGDLKITSGPAIERAGDLAAILTTLKDYDVLFIDEIHRLNRSVEEILYPAMEDYA 131

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           LD+++G+G +A+S++++L +FTLI ATTR+G+LT+PL+DRFG+   + +Y+   LK IV 
Sbjct: 132 LDIVIGKGAAAKSIRLDLPKFTLIGATTRIGMLTSPLRDRFGVLCAMEYYDENQLKEIVI 191

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A + G  +T+E A EIA RSRGTPRIA RLL+RVRD++EV     I+ + A  AL  L
Sbjct: 192 RSAAVFGCKITEEGALEIASRSRGTPRIANRLLKRVRDYSEVKSNTVISLKEAREALELL 251

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D  GFD++D + L  I  NF GGPVGIET+S  + E    +ED+ EPY++Q+GFI RT
Sbjct: 252 EVDNQGFDKVDNKILEAIIDNFNGGPVGIETLSYFIGEELGTVEDVYEPYLLQKGFIVRT 311

Query: 314 PRGRLLMPIAWQHLG 328
           PRGR+    A++HLG
Sbjct: 312 PRGRIASDKAYKHLG 326


>gi|269216142|ref|ZP_06159996.1| holliday junction DNA helicase RuvB [Slackia exigua ATCC 700122]
 gi|269130401|gb|EEZ61479.1| holliday junction DNA helicase RuvB [Slackia exigua ATCC 700122]
          Length = 366

 Score =  350 bits (897), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 172/308 (55%), Positives = 227/308 (73%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L ++ GQ     +L + I+AA+ R E +DHVLF GPPGLGKTTLA VVA EL  N
Sbjct: 56  LRPKRLIDYLGQTRIKESLSILIQAARQRGECMDHVLFSGPPGLGKTTLATVVANELDAN 115

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R+TSGP IA+ GDLAA+LTNLED DVLFIDEIHRL+  VEE+LYPA+ED+ LD++VG+G
Sbjct: 116 IRTTSGPAIARPGDLAAILTNLEDGDVLFIDEIHRLNRQVEEVLYPALEDYVLDIVVGKG 175

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS++++L RFTL+ ATTR GLLT PL+DRFGI  RLN+Y  E+L  IV R A +  +
Sbjct: 176 PAARSIRLDLPRFTLVGATTRTGLLTGPLRDRFGIAFRLNYYTPEELSDIVARSAGILDV 235

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  + A EIA RSRGTPR+A RLL+RVRD+A+V     I  ++A  AL    +D +G D
Sbjct: 236 PIDADGAIEIARRSRGTPRLANRLLKRVRDWAQVRGTGIIDEDVAAQALSFFEVDSLGLD 295

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            LD R L ++  +FGG  VG+ T+++ LSE +D +ED+ EP++IQQG I RTP+GRL   
Sbjct: 296 ALDNRILELLCVSFGGRAVGLSTLASALSEDQDTVEDVYEPFLIQQGLIIRTPKGRLATD 355

Query: 322 IAWQHLGI 329
            A++H+GI
Sbjct: 356 RAYEHMGI 363


>gi|91216977|ref|ZP_01253940.1| Holliday junction DNA helicase B [Psychroflexus torquis ATCC
           700755]
 gi|91184848|gb|EAS71228.1| Holliday junction DNA helicase B [Psychroflexus torquis ATCC
           700755]
          Length = 340

 Score =  350 bits (897), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 174/319 (54%), Positives = 224/319 (70%), Gaps = 1/319 (0%)

Query: 11  NVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           N   +D ++   LRP + ++F GQ     NL+VF++AA  R EALDH LF GPPGLGKTT
Sbjct: 11  NFDNQDHEVDRALRPLSFDDFAGQSHVLENLQVFVKAANLRGEALDHTLFHGPPGLGKTT 70

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           LA ++A EL    + TSGPVI K GDLA LLTNLE RDVLFIDEIHRLS +VEE LY AM
Sbjct: 71  LAHILANELQTGIKITSGPVIDKPGDLAGLLTNLEPRDVLFIDEIHRLSSVVEEYLYSAM 130

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           EDF++D+M+  GP+ARSV+INL+ FTL+ ATTR GLLT P++ RFGI  RL +Y  E L 
Sbjct: 131 EDFKIDIMIESGPNARSVEINLNPFTLVGATTRSGLLTAPMRARFGISSRLEYYSTELLS 190

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            I+ R   + G+++T ++A EIA RSRGTPRIA  LLRRVRDFA++     I  EI+  +
Sbjct: 191 GIILRSGSILGVSITTDSAIEIAGRSRGTPRIANALLRRVRDFAQIKGNGKIDMEISKYS 250

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           L  L +D  G D +D + L  I   F GGPVG+ T++  +SE  + IE++ EP++IQQGF
Sbjct: 251 LKALNVDAFGLDDMDNKILLTIIDKFKGGPVGLTTLATAVSENAETIEEVYEPFLIQQGF 310

Query: 310 IQRTPRGRLLMPIAWQHLG 328
           I RTPRGR +   A++HLG
Sbjct: 311 INRTPRGREVTDSAYKHLG 329


>gi|237737738|ref|ZP_04568219.1| holliday junction DNA helicase ruvB [Fusobacterium mortiferum ATCC
           9817]
 gi|229419618|gb|EEO34665.1| holliday junction DNA helicase ruvB [Fusobacterium mortiferum ATCC
           9817]
          Length = 333

 Score =  350 bits (897), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 167/306 (54%), Positives = 225/306 (73%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP++  E+ GQ      + ++IEAAK R  ++DH+L  GPPGLGKTTLA VVA E+G N
Sbjct: 20  LRPKSFREYIGQESLKDKMSIYIEAAKRRGSSVDHILLYGPPGLGKTTLAGVVANEMGAN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGPV+ +AGDLAA+LT+LE+ D+LFIDEIHRL+  VEEILYPAMED +LD+++G+G
Sbjct: 80  LKITSGPVLERAGDLAAILTSLEENDILFIDEIHRLNNTVEEILYPAMEDGELDIIIGKG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSARS++I L  FTLI ATTR GLL++PL+DRFG+  R+ +Y  E+L  I+ RG K+ G+
Sbjct: 140 PSARSIRIELPNFTLIGATTRAGLLSSPLRDRFGVTHRMEYYTEEELAQIILRGGKILGV 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            V  E A E+A RSRGTPRIA RLL+RVRD+ E+     IT+EI+  AL  L +D +G D
Sbjct: 200 KVEREGALELASRSRGTPRIANRLLKRVRDYCEIRGNGVITKEISMKALDILGVDSVGLD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            LD   +  I  N+GGGPVGIET+S  L E R  +E++ EPY+++ G+I+RT RGR++  
Sbjct: 260 DLDRDIINAIIDNYGGGPVGIETLSLLLGEDRRTLEEVYEPYLVKIGYIKRTNRGRVVTE 319

Query: 322 IAWQHL 327
            A++H 
Sbjct: 320 KAYEHF 325


>gi|239628225|ref|ZP_04671256.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239518371|gb|EEQ58237.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 335

 Score =  350 bits (897), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 170/323 (52%), Positives = 236/323 (73%), Gaps = 1/323 (0%)

Query: 7   LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           +++ +V+ ED  I + LRP+ L+++ GQ +  S LKV+IEAA+ R EALDHVLF GPPGL
Sbjct: 5   IITTDVTAEDERIETTLRPQCLKDYVGQEKLKSTLKVYIEAARNRNEALDHVLFYGPPGL 64

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLA ++A E+G + + TSGP I K G++AA+L NL++ DVLF+DEIHRL+  VEE+L
Sbjct: 65  GKTTLAGIIANEMGSSMKVTSGPAIEKPGEMAAILNNLQEGDVLFVDEIHRLNRQVEEVL 124

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           YPAMEDF +D+M+G+  +ARS++++L  FTL+ ATTR GLLT PL+DRFG+  RL FY  
Sbjct: 125 YPAMEDFAIDIMLGKDSTARSIRLDLPHFTLVGATTRAGLLTAPLRDRFGVVQRLEFYTP 184

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           ++L TI+   A++ G+ + +  A E+A RSRGTPR+A RLL+RVRDFA+V +   ITRE+
Sbjct: 185 KELTTIILHSARVLGVEIEEAGALELARRSRGTPRLANRLLKRVRDFAQVKYDGVITREV 244

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
            D AL  + +DK+G DQ D   L MI   F GGPVG++T++A L E    +E++ EPY++
Sbjct: 245 TDFALDIMDVDKLGLDQNDRNILLMIIEKFSGGPVGLDTLAAALGEDSGTLEEVYEPYLL 304

Query: 306 QQGFIQRTPRGRLLMPIAWQHLG 328
             G I RTPRGR     A++HLG
Sbjct: 305 MNGLINRTPRGRTATESAYRHLG 327


>gi|260591888|ref|ZP_05857346.1| holliday junction DNA helicase RuvB [Prevotella veroralis F0319]
 gi|260536172|gb|EEX18789.1| holliday junction DNA helicase RuvB [Prevotella veroralis F0319]
          Length = 344

 Score =  350 bits (897), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 170/307 (55%), Positives = 225/307 (73%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP   ++F+GQ +   NL+VF+EAAK R E LDH L  GPPGLGKTTL+ ++A ELGV 
Sbjct: 23  LRPLKFDDFSGQQKVVENLRVFVEAAKYRGEPLDHTLLHGPPGLGKTTLSNIIANELGVG 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS +VEE LY AMED+++D+M+ +G
Sbjct: 83  FKITSGPVLDKPGDLAGILTSLEPNDVLFIDEIHRLSPVVEEYLYSAMEDYRIDIMIDKG 142

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSARS++I+L+ FTL+ ATTR GLLT PL+ RFGI + L +Y+ E ++ I++R A L  +
Sbjct: 143 PSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGINLHLEYYDPETIQRIIKRSAYLLKV 202

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + DEAA EI+ RSRGTPRI   LLRRVRDFA+V    TIT EIA  +L  L ID+ G D
Sbjct: 203 PIVDEAAVEISRRSRGTPRICNSLLRRVRDFAQVKGNGTITPEIAMMSLQSLNIDQYGLD 262

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           ++D + L  I   F GGPVG+ TI+  + E    +E++ EP++I +GFI+RTPRGR+   
Sbjct: 263 EIDNKILLTIIDKFRGGPVGVSTIATAIGEDAGTVEEVYEPFLIMEGFIKRTPRGRVATQ 322

Query: 322 IAWQHLG 328
           +A+ HLG
Sbjct: 323 LAYDHLG 329


>gi|160942100|ref|ZP_02089415.1| hypothetical protein CLOBOL_06988 [Clostridium bolteae ATCC
           BAA-613]
 gi|158434991|gb|EDP12758.1| hypothetical protein CLOBOL_06988 [Clostridium bolteae ATCC
           BAA-613]
          Length = 335

 Score =  349 bits (896), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 170/326 (52%), Positives = 234/326 (71%), Gaps = 1/326 (0%)

Query: 7   LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           +++  V+ ED  I + LRP+ L ++ GQ +  S L ++IEAAK R E LDHVLF GPPGL
Sbjct: 5   IITTEVTAEDERIETTLRPQCLRDYVGQEKIKSTLNIYIEAAKTRGEPLDHVLFYGPPGL 64

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLA ++A E+G N + TSGP I K G++AA+L NL++ DVLF+DEIHRL+  VEE+L
Sbjct: 65  GKTTLAGIIANEMGTNMKVTSGPAIEKPGEMAAILNNLQEGDVLFVDEIHRLNRQVEEVL 124

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           YPAMEDF +D+M+G+  +ARS++++L  FTL+ ATTR GLLT PL+DRFG+  RL FY  
Sbjct: 125 YPAMEDFAIDIMLGKDSTARSIRLDLPHFTLVGATTRAGLLTAPLRDRFGVIQRLEFYTP 184

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           E+LK I+   A++ G+ +    A E+A RSRGTPR+A RLL+RVRDFA+V +   ITRE+
Sbjct: 185 EELKIIILHSARVLGVEIEAGGAMELARRSRGTPRLANRLLKRVRDFAQVKYDGVITREV 244

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
            D AL  + +DK+G DQ D   L MI   F GGPVG++T++A L E    +E++ EPY++
Sbjct: 245 TDFALDIMDVDKLGLDQNDRNILLMIIEKFSGGPVGLDTLAAALGEDSGTLEEVYEPYLL 304

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDI 331
             G I RTPRGR+    A +HLG+++
Sbjct: 305 MNGLINRTPRGRMATETACRHLGLEM 330


>gi|332886001|gb|EGK06245.1| Holliday junction ATP-dependent DNA helicase ruvB [Dysgonomonas
           mossii DSM 22836]
          Length = 340

 Score =  349 bits (896), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 172/319 (53%), Positives = 233/319 (73%), Gaps = 1/319 (0%)

Query: 11  NVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           N+++ + +  + LRP T + F GQ +   NL+VF+ AAK R E+LDH L  GPPGLGKTT
Sbjct: 11  NINENEKEFENALRPLTFQSFRGQSKVVENLQVFVTAAKMRGESLDHTLLHGPPGLGKTT 70

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           L+ ++A ELGV F+ TSGPV+ K GDLA LLT+LE  DVLFIDEIHRLS +VEE LY AM
Sbjct: 71  LSNIIANELGVGFKITSGPVLDKPGDLAGLLTSLEPNDVLFIDEIHRLSPVVEEYLYSAM 130

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           ED+++D+M+ +GPSARSV+I L+ FTL+ ATTR GLLT+PL+ RFGI + L +Y+I+ L 
Sbjct: 131 EDYRIDIMIDKGPSARSVQIELNPFTLVGATTRSGLLTSPLRARFGINMHLEYYDIDTLV 190

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            I+ R A +  +  + ++A EIA RSRGTPRIA  LLRRVRDFA+V  +  I ++IA  A
Sbjct: 191 HIILRSADILNVPASKDSAIEIASRSRGTPRIANALLRRVRDFAQVKGSGKIDKDIASYA 250

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           L  L IDK G D++D + L ++   F GGPVGI TI+  L E    IE++ EP++I++GF
Sbjct: 251 LEALNIDKYGLDEIDNKILLILIDKFKGGPVGISTIATALGEDGGTIEEVYEPFLIKEGF 310

Query: 310 IQRTPRGRLLMPIAWQHLG 328
           ++RTPRGR +  +A++HLG
Sbjct: 311 MKRTPRGREVTDLAYKHLG 329


>gi|255010257|ref|ZP_05282383.1| Holliday junction DNA helicase RuvB [Bacteroides fragilis 3_1_12]
 gi|313148052|ref|ZP_07810245.1| holliday junction DNA helicase ruvB [Bacteroides fragilis 3_1_12]
 gi|313136819|gb|EFR54179.1| holliday junction DNA helicase ruvB [Bacteroides fragilis 3_1_12]
          Length = 342

 Score =  349 bits (896), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 176/322 (54%), Positives = 235/322 (72%), Gaps = 4/322 (1%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L SR    E+A    LRP + E+F GQ +   NL++F++AA+ R EALDHVL  GPPGLG
Sbjct: 12  LTSRERDFENA----LRPLSFEDFNGQDKVVDNLRIFVKAARLRGEALDHVLLHGPPGLG 67

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTTL+ ++A ELGV F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS +VEE LY
Sbjct: 68  KTTLSNIIANELGVGFKITSGPVLDKPGDLAGVLTSLEPNDVLFIDEIHRLSPVVEEYLY 127

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            AMED+++D+M+ +GPSARS++I+LS FTL+ ATTR GLLT PL+ RFGI + L +Y+ +
Sbjct: 128 SAMEDYRIDIMIDKGPSARSIQIDLSPFTLVGATTRSGLLTAPLRARFGINLHLEYYDDD 187

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
            L  I++R A +  +  + +AA EIA RSRGTPRIA  LLRRVRDFA+V  + +I  EIA
Sbjct: 188 ILSGIIRRSAGILDVPCSSQAAGEIASRSRGTPRIANALLRRVRDFAQVKGSGSIDTEIA 247

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           + AL  L IDK G D++D + L  I   F GGPVG+ TI+  L E    IE++ EP++I+
Sbjct: 248 NYALEALNIDKYGLDEIDNKILCTIIDKFKGGPVGLTTIATALGEDAGTIEEVYEPFLIK 307

Query: 307 QGFIQRTPRGRLLMPIAWQHLG 328
           +GF++RTPRGR +  +A++HLG
Sbjct: 308 EGFLKRTPRGREVTELAYKHLG 329


>gi|121998992|ref|YP_001003779.1| Holliday junction DNA helicase RuvB [Halorhodospira halophila SL1]
 gi|171769516|sp|A1WZ65|RUVB_HALHL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|121590397|gb|ABM62977.1| Holliday junction DNA helicase subunit RuvB [Halorhodospira
           halophila SL1]
          Length = 346

 Score =  349 bits (896), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 168/308 (54%), Positives = 226/308 (73%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP +L+E+ GQ      L++FI AA+ R E LDH L  GPPGLGKTTLA ++A E+G +
Sbjct: 27  LRPVSLDEYVGQTGVREQLEIFIRAARGRDEPLDHTLLFGPPGLGKTTLANIIATEMGAS 86

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R +SGPV+ + GDLAA+LTNLE  DVLFIDEIHRLS +VEE+LYPAMEDF++D+++GEG
Sbjct: 87  LRQSSGPVLDRPGDLAAILTNLEPGDVLFIDEIHRLSSVVEEVLYPAMEDFRIDIVIGEG 146

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+K++L  FTL+ ATTR GLLT+PL+DRFGI  RL +Y +++L  IVQR A   G+
Sbjct: 147 PAARSIKLDLPPFTLVGATTRAGLLTSPLRDRFGIVQRLAYYPVDELTRIVQRSAGRLGV 206

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
           +     A EIA R+RGTPR+A RLLRRVRDFAEV     IT ++A  A+  L +D+ G D
Sbjct: 207 STEAHGAAEIARRARGTPRVANRLLRRVRDFAEVRADGRITEQVAADAMELLDVDRNGLD 266

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           + D R L  +   FGGGPVG++ ++  + E R  +ED++EPY+IQ+G++ RTPRGR+   
Sbjct: 267 EQDRRLLEAVVHKFGGGPVGLDNLATAIGEERGTLEDVVEPYLIQEGYLMRTPRGRVATE 326

Query: 322 IAWQHLGI 329
            A+  LG+
Sbjct: 327 HAYTLLGV 334


>gi|160942947|ref|ZP_02090186.1| hypothetical protein FAEPRAM212_00424 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445848|gb|EDP22851.1| hypothetical protein FAEPRAM212_00424 [Faecalibacterium prausnitzii
           M21/2]
          Length = 351

 Score =  349 bits (896), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 169/318 (53%), Positives = 228/318 (71%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           D + + LRP+ LE++ GQ +A  NLK+++EAAK R E +DH+L  GPPGLGKTTLA ++A
Sbjct: 21  DNEENNLRPQHLEDYIGQEKAKQNLKIYLEAAKRRGEPVDHILLYGPPGLGKTTLAGIIA 80

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
            E+GV  R TSGP I K GDLAALLTNL++ DVLFIDEIHRLS  VEE+LYPA+ED+ LD
Sbjct: 81  NEMGVQIRITSGPAIEKPGDLAALLTNLQEGDVLFIDEIHRLSRQVEEVLYPALEDYALD 140

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           +M+G+GPSA+S++INL RFTL+ ATTR G +T PL+DRFG+ ++L  Y  ++L  I+ R 
Sbjct: 141 IMIGKGPSAQSIRINLPRFTLVGATTRAGQITGPLRDRFGVLLKLELYSPDELSRIIMRS 200

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255
           A +    +T E A E+A  SRGTPR+A R L+R+RDFA V     I +++A   L R+ +
Sbjct: 201 AGILDQPITPEGAYELAKCSRGTPRVANRFLKRIRDFATVLGDGIIDQDVALLGLKRMDV 260

Query: 256 DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR 315
           D +G D+LD   L  I   + GGPVG+ET++A L E    +EDL EPY++Q GF+ RTPR
Sbjct: 261 DALGLDELDRSLLRAIIEMYNGGPVGLETLAAALGEEAVTLEDLCEPYLMQMGFLTRTPR 320

Query: 316 GRLLMPIAWQHLGIDIPH 333
           GR    +A++HLG+  P 
Sbjct: 321 GRCATRLAYEHLGMKAPE 338


>gi|315651979|ref|ZP_07904981.1| crossover junction ATP-dependent DNA helicase RuvB [Eubacterium
           saburreum DSM 3986]
 gi|315485808|gb|EFU76188.1| crossover junction ATP-dependent DNA helicase RuvB [Eubacterium
           saburreum DSM 3986]
          Length = 332

 Score =  349 bits (896), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 170/326 (52%), Positives = 232/326 (71%), Gaps = 1/326 (0%)

Query: 7   LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           ++S  +++ED  I   LRP+ L E+ GQ +   NLKV+I+AAK R E+LDHVLF GPPGL
Sbjct: 5   IISTEITKEDKQIEKSLRPQFLNEYIGQEKIRKNLKVYIDAAKFRNESLDHVLFYGPPGL 64

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTL  ++A E+G N + TSGP I K GD+AA+L NL + DVLF+DEIHRL+  VEE+L
Sbjct: 65  GKTTLCNIIANEMGTNLKVTSGPAIEKPGDMAAILNNLNEGDVLFVDEIHRLNRQVEEVL 124

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           YPAMEDF +D+++G+   ARS++++L +FTL+ ATTR GLLT PL+DRFG+  +L FY  
Sbjct: 125 YPAMEDFVIDIVIGKDAGARSIRLDLPKFTLVGATTRAGLLTAPLRDRFGVVQKLEFYNT 184

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           ++LK IV+R A + G+ + +  A EIA RSRGTPR+A RLL+RVRDFA+V +   I + +
Sbjct: 185 DELKEIVRRSATVLGVEIDNNGAIEIARRSRGTPRLANRLLKRVRDFAQVKYNGIIDKGV 244

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           AD AL  L +DK+G D  D   L  I   FGGGPVG+ T+SA + E    +E++ EPY++
Sbjct: 245 ADFALDTLDVDKLGLDNNDRMILLTIIEKFGGGPVGLNTLSAAIGEDAGTLEEVYEPYLL 304

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDI 331
             G I RTP GR+    A+ HLGI++
Sbjct: 305 MNGLINRTPGGRVATENAYIHLGIEM 330


>gi|320450980|ref|YP_004203076.1| holliday junction DNA helicase RuvB [Thermus scotoductus SA-01]
 gi|320151149|gb|ADW22527.1| holliday junction DNA helicase RuvB [Thermus scotoductus SA-01]
          Length = 323

 Score =  349 bits (896), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 176/312 (56%), Positives = 232/312 (74%), Gaps = 1/312 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPRTL+E+ GQ      L+V++EAAKAR E L+H+L  GPPGLGKTTLA V+A ELGVN
Sbjct: 7   LRPRTLDEYIGQERLKKKLRVYLEAAKARGEPLEHLLLFGPPGLGKTTLAHVIAHELGVN 66

Query: 82  FRSTSGPVIAKAGDLAALLTN-LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
            R TSGP I K GDLAA+L N LE+ D+LFIDEIHRLS   EE LYPAMEDF++D+++G+
Sbjct: 67  LRVTSGPAIEKPGDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFKMDIVIGQ 126

Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
           GP+AR++++ L RFTLI ATTR GL+T PL+ RFGI   L +Y +E+L   V+R A+L G
Sbjct: 127 GPAARTIRLELPRFTLIGATTRPGLITAPLRSRFGIVEHLEYYSLEELAEGVRRDARLLG 186

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGF 260
           +A+T+EAA EIA RSRGT R+A RL RRVRDFA+VA  +TIT+E    AL  L +D++G 
Sbjct: 187 VAITEEAALEIAKRSRGTMRVAKRLFRRVRDFAQVAGEETITQERTLEALNALGLDELGL 246

Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320
           ++ D   L  +   FGGGPVG++T++  +SE    +E++ EPY+IQQG ++RTPRGR+  
Sbjct: 247 EKRDREILETLILRFGGGPVGLQTLATAVSEDPGTLEEVHEPYLIQQGLLKRTPRGRVAT 306

Query: 321 PIAWQHLGIDIP 332
             A++HLG   P
Sbjct: 307 ERAYRHLGYPPP 318


>gi|303233191|ref|ZP_07319864.1| Holliday junction DNA helicase RuvB [Atopobium vaginae PB189-T1-4]
 gi|302480776|gb|EFL43863.1| Holliday junction DNA helicase RuvB [Atopobium vaginae PB189-T1-4]
          Length = 369

 Score =  349 bits (896), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 171/330 (51%), Positives = 235/330 (71%), Gaps = 5/330 (1%)

Query: 8   LSRNV----SQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           L RNV    + ED D+   LRP TL ++ GQ     N++V I AAK R E LDHVLF GP
Sbjct: 37  LPRNVDPTCTDEDIDVERSLRPETLSDYCGQTRVRENMRVLISAAKERNETLDHVLFSGP 96

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA +VA E+    ++TSGP I + GDLAALLTNLE+ DVLF+DEIHRL+  +E
Sbjct: 97  PGLGKTTLASIVAHEMNARLKTTSGPAITRTGDLAALLTNLEEGDVLFVDEIHRLNHQIE 156

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMEDF LD+++G+GP+ARS++++L  FTLI ATTR GLL+ PL+DRFGI  +L++
Sbjct: 157 EVLYPAMEDFVLDIVIGKGPAARSIRLDLPHFTLIGATTRTGLLSGPLRDRFGISYQLDY 216

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y +E+L  IV R A +  + +  + A EIA RSRGTPR+A RLL+RVRD+A+V  A TI+
Sbjct: 217 YSVEELAAIVTRSAGILQVDIDRQGALEIASRSRGTPRLANRLLKRVRDYAQVRAAGTIS 276

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            ++A  AL    ID++G D +D + L  + + F G PVG+ T+S+ + E    +ED+ EP
Sbjct: 277 WDVASEALKFFEIDELGLDWMDKKILDALCKTFRGRPVGLTTLSSAVGEDPATLEDVYEP 336

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           Y++QQG + RTP+GR    +A++H+G+  P
Sbjct: 337 YLLQQGLLVRTPQGRQATSMAFEHVGLPAP 366


>gi|255037439|ref|YP_003088060.1| Holliday junction DNA helicase RuvB [Dyadobacter fermentans DSM
           18053]
 gi|254950195|gb|ACT94895.1| Holliday junction DNA helicase RuvB [Dyadobacter fermentans DSM
           18053]
          Length = 341

 Score =  349 bits (895), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 175/325 (53%), Positives = 235/325 (72%), Gaps = 1/325 (0%)

Query: 11  NVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           N+S  D DI   LRP + E+FTGQ +   NL++F++AA+ R +ALDHVL  GPPGLGKTT
Sbjct: 12  NLSNTDKDIERALRPLSFEDFTGQDKILENLRIFVQAARQRGDALDHVLLHGPPGLGKTT 71

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           L+ ++A ELG   + TSGPV+ K  DLA LLTNL++ DVLFIDEIHRL+ IVEE LY AM
Sbjct: 72  LSNIIANELGSGIKITSGPVLDKPSDLAGLLTNLQEHDVLFIDEIHRLNPIVEEYLYSAM 131

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           ED+++D+M+  GP+ARS++I L+ FTLI ATTR G+LT+PL+ RFGI  RL +Y+ + L 
Sbjct: 132 EDYKIDIMLDSGPNARSIQIGLNPFTLIGATTRAGMLTSPLRARFGINARLEYYDAQLLS 191

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
           +I++R A + G  + ++AA EIA RSRGTPRIA  LLRR RDFA+V     IT  IA+ A
Sbjct: 192 SILKRSASILGTPLEEDAAFEIARRSRGTPRIANNLLRRTRDFAQVKGNGRITVAIAEMA 251

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           L  L +D+ G D++D R L+ I + F GGPVG+ TI+    E  D IE++ EP++IQ+G+
Sbjct: 252 LQALDVDQNGLDEMDNRILSTIIQKFKGGPVGLSTIATACGEEADTIEEVYEPFLIQEGY 311

Query: 310 IQRTPRGRLLMPIAWQHLGIDIPHR 334
           I+RT RGR +   A++HLGI   HR
Sbjct: 312 IKRTSRGREVTEKAFRHLGILPRHR 336


>gi|331269239|ref|YP_004395731.1| Holliday junction DNA helicase RuvB [Clostridium botulinum
           BKT015925]
 gi|329125789|gb|AEB75734.1| Holliday junction DNA helicase RuvB [Clostridium botulinum
           BKT015925]
          Length = 337

 Score =  349 bits (895), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 177/331 (53%), Positives = 237/331 (71%), Gaps = 3/331 (0%)

Query: 1   MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M DR  ++S +  +ED D+   LRP  L E+ GQ +    L +FIEAAK R EALDHVL 
Sbjct: 1   MEDR--IVSASYKREDFDVEHSLRPEKLSEYIGQSKVKEKLNIFIEAAKMRQEALDHVLL 58

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A+E+G   + TSGP I +AGD+AA+LT+L D DVLFIDEIHRL+ 
Sbjct: 59  YGPPGLGKTTLANIIAKEMGGTLKVTSGPAIERAGDMAAILTSLNDYDVLFIDEIHRLNR 118

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEEI+YPAMED  LD+++G+G +A+S++++L +FTLI ATTRVGLLT+PL+DRFG+   
Sbjct: 119 TVEEIMYPAMEDNVLDIVIGKGAAAKSIRLDLPKFTLIGATTRVGLLTSPLRDRFGVLSA 178

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           + FY  ++LK IV R +K+ G+  T++AA EIA RSRGTPRIA R+L+RVRD+ +V    
Sbjct: 179 MEFYNEDELKEIVLRSSKILGVVTTEDAAFEIARRSRGTPRIANRILKRVRDYCDVKGNG 238

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I   IA +AL  L ID  GFD +D + L  I  NF GGPVG+ET++  + E  D I+D+
Sbjct: 239 IIDINIAQSALELLEIDGEGFDNIDNKILEAIIDNFKGGPVGLETLAYFVGEELDTIQDV 298

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
            EPY++Q+GF+ R PRGR     A++HL  D
Sbjct: 299 YEPYLLQKGFVIRMPRGRKATEKAYRHLKRD 329


>gi|315223634|ref|ZP_07865488.1| crossover junction ATP-dependent DNA helicase RuvB [Capnocytophaga
           ochracea F0287]
 gi|314946415|gb|EFS98410.1| crossover junction ATP-dependent DNA helicase RuvB [Capnocytophaga
           ochracea F0287]
          Length = 341

 Score =  349 bits (895), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 177/325 (54%), Positives = 230/325 (70%), Gaps = 1/325 (0%)

Query: 11  NVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           N S ++ DI   LRP + ++F GQ     NLKVF++AA  R EALDH LF GPPGLGKTT
Sbjct: 11  NYSAQELDIERALRPLSFDDFAGQEAVLENLKVFVKAANMRHEALDHTLFHGPPGLGKTT 70

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           LA ++A ELGV  + TSGPV+ K GDLA LLTNL++RDVLFIDEIHRLS +VEE LY AM
Sbjct: 71  LAHILANELGVGIKITSGPVLDKPGDLAGLLTNLQERDVLFIDEIHRLSPVVEEYLYSAM 130

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           ED+++D+M+  GP+AR+V+INL+ FTLI ATTR GLLT P++ RFGI  RL +Y  E L 
Sbjct: 131 EDYKIDIMIESGPNARTVQINLNPFTLIGATTRSGLLTAPMRARFGIQSRLQYYSTELLA 190

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            IVQR A +  + ++ EAA E+A RSRGTPRIA  LLRR+RDFA++     I   I    
Sbjct: 191 DIVQRSASILKVPISMEAAIELASRSRGTPRIANALLRRIRDFAQIKGNGEINIAITRFG 250

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           L  L +D  G D++D + L+ +   F GGPVGI T++  +SE  + IE++ EP++IQ+GF
Sbjct: 251 LKALNVDAHGLDEMDNKILSTLIDKFKGGPVGITTLATAVSESAETIEEVYEPFLIQEGF 310

Query: 310 IQRTPRGRLLMPIAWQHLGIDIPHR 334
           I RTPRGR +  +A++HLG   P R
Sbjct: 311 IVRTPRGREVTDLAYKHLGRVNPTR 335


>gi|120434537|ref|YP_860232.1| Holliday junction DNA helicase RuvB [Gramella forsetii KT0803]
 gi|171460822|sp|A0LXR1|RUVB_GRAFK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|117576687|emb|CAL65156.1| Holliday junction ATP-dependent DNA helicase RuvB [Gramella
           forsetii KT0803]
          Length = 343

 Score =  349 bits (895), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 176/319 (55%), Positives = 228/319 (71%), Gaps = 1/319 (0%)

Query: 11  NVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           N S E+ D+   LRP + ++F GQ +   NL++F++AA  R EALDH LF GPPGLGKTT
Sbjct: 12  NFSPEEFDVERALRPLSFDDFAGQEQVLENLQIFVQAANLRGEALDHTLFHGPPGLGKTT 71

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           LA ++A EL V  + TSGPV+ K GDLA LLTNL++RD+LFIDEIHRLS IVEE LY AM
Sbjct: 72  LAHILANELNVGIKITSGPVLDKPGDLAGLLTNLDERDILFIDEIHRLSPIVEEYLYSAM 131

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           ED+++D+M+  GP+AR+V+INL+ FTLI ATTR GLLT P++ RFGI  RL +Y  E L 
Sbjct: 132 EDYRIDIMIETGPNARTVQINLNPFTLIGATTRSGLLTAPMRARFGISSRLQYYSTELLS 191

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            IV+R + +  + +T +AA EIA RSRGTPRIA  LLRRVRDFA++     I  EIA   
Sbjct: 192 GIVERSSDILKVPITQDAAIEIAGRSRGTPRIANALLRRVRDFAQIKGNGKIDIEIAKFG 251

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           L  L +D  G D++D + L  I   F GGPVGI T++  +SE  + IE++ EP++IQQGF
Sbjct: 252 LKALNVDAHGLDEMDNKILATIIDKFKGGPVGITTLATAVSESAETIEEVYEPFLIQQGF 311

Query: 310 IQRTPRGRLLMPIAWQHLG 328
           I RTPRGR +   A++HLG
Sbjct: 312 IYRTPRGREVTEHAYRHLG 330


>gi|256545113|ref|ZP_05472479.1| Holliday junction DNA helicase RuvB [Anaerococcus vaginalis ATCC
           51170]
 gi|256399154|gb|EEU12765.1| Holliday junction DNA helicase RuvB [Anaerococcus vaginalis ATCC
           51170]
          Length = 336

 Score =  349 bits (895), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 168/308 (54%), Positives = 226/308 (73%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L+++ GQ +A   LK+FIE++K R EALDHVL  GPPGLGKTTL+ ++A ELGVN
Sbjct: 24  IRPKWLKDYIGQDKAKEKLKIFIESSKKRQEALDHVLLQGPPGLGKTTLSNIIANELGVN 83

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGP I +  DLA++LTNL+  DVLFIDEIHR++  VEEILYPAMEDF LD++VG+G
Sbjct: 84  IRITSGPAIERPSDLASILTNLDKGDVLFIDEIHRINRSVEEILYPAMEDFALDIIVGKG 143

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+A+S++I+L +FTL+ ATTR G+L+ PL+DRFG+ + LN Y+ +DL  IV+R A +  +
Sbjct: 144 PNAQSIRIDLEKFTLVGATTRAGMLSAPLRDRFGVLLSLNLYDTKDLTKIVKRSADILEI 203

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + D+ A EIA RSRGTPRIA RLLRRVRD+A V   + I  E +   L  L +D MG D
Sbjct: 204 PIEDKGAFEIARRSRGTPRIANRLLRRVRDYAIVKKDEIIDYETSCEGLELLEVDPMGLD 263

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + +  +  NF GGPVGI+TI+A        IED+ EPY++Q GF+ RTPRGR+L  
Sbjct: 264 NMDKKIVLTMYENFSGGPVGIDTIAASTGIENITIEDVYEPYLLQIGFLTRTPRGRILTR 323

Query: 322 IAWQHLGI 329
            A++H G+
Sbjct: 324 KAYEHYGL 331


>gi|154490080|ref|ZP_02030341.1| hypothetical protein PARMER_00309 [Parabacteroides merdae ATCC
           43184]
 gi|154089229|gb|EDN88273.1| hypothetical protein PARMER_00309 [Parabacteroides merdae ATCC
           43184]
          Length = 361

 Score =  349 bits (895), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 173/307 (56%), Positives = 225/307 (73%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP +  +F+GQ +   NLK+F+ AA+ R EALDHVL  GPPGLGKTTL+ ++A ELGV 
Sbjct: 43  LRPLSFHDFSGQAKVVENLKIFVMAARMRKEALDHVLLHGPPGLGKTTLSNIIANELGVG 102

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS IVEE LY AMED+++D+M+ +G
Sbjct: 103 FKVTSGPVLDKPGDLAGVLTSLEKNDVLFIDEIHRLSPIVEEYLYSAMEDYRIDIMIDKG 162

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSARS++I+L+ FTL+ ATTR GLLT+PL+ RFGI + L +YE+E L  IV R A +  +
Sbjct: 163 PSARSIQIDLAPFTLVGATTRSGLLTSPLRARFGINMHLEYYEMETLTKIVLRSADILNV 222

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
                AA EIA RSRGTPRIA  LLRRVRDFA+V  +  I + I+  AL  L ID+ G D
Sbjct: 223 KCELSAAREIASRSRGTPRIANALLRRVRDFAQVKGSGEIDKAISCYALEALNIDRYGLD 282

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           Q+D + LT I   F GGPVG+ TI+  L E    +E++ EP++I++GFI+RTPRGR +  
Sbjct: 283 QIDNKLLTTIIDKFNGGPVGLTTIATALGEDPGTLEEVYEPFLIKEGFIKRTPRGREVTE 342

Query: 322 IAWQHLG 328
           +A+ HLG
Sbjct: 343 LAYTHLG 349


>gi|297616929|ref|YP_003702088.1| Holliday junction DNA helicase RuvB [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297144766|gb|ADI01523.1| Holliday junction DNA helicase RuvB [Syntrophothermus lipocalidus
           DSM 12680]
          Length = 346

 Score =  349 bits (895), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 177/323 (54%), Positives = 238/323 (73%), Gaps = 1/323 (0%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           G +  +  + + +ISL RP  L E+ GQ +A  N+ VFI++A  R E LDHVL  GPPGL
Sbjct: 8   GRVEEDFIETNIEISL-RPSRLAEYIGQEKAKENIAVFIDSALQRKEPLDHVLLSGPPGL 66

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLA V+A E+G   R TSGP + + GDLAA+LTNLE  +VLFIDEIHRL+ +VEEIL
Sbjct: 67  GKTTLASVIANEMGKPIRKTSGPALERPGDLAAILTNLEPGEVLFIDEIHRLNRVVEEIL 126

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           YPAMEDF +D+++G+GPSAR+++++L  FTLI ATTR GLL++PL+DRFGI  RL+FYE 
Sbjct: 127 YPAMEDFAIDIVIGKGPSARTLRLDLPPFTLIGATTRPGLLSSPLRDRFGILCRLDFYEE 186

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           ++L  I+ R A L G+++ +  A EIA R+RGTPRIA RLL+RVRDFA V    TI  EI
Sbjct: 187 DELILIITRSAALLGISIDEGGAREIARRARGTPRIANRLLKRVRDFAVVQSGGTIDAEI 246

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           A  AL +L ID+ G D++D   L +I   F GGPVG++T++A +SE  D + D+ EPY++
Sbjct: 247 AAMALSKLEIDERGLDRIDRTILDIIISKFNGGPVGLDTLAAAVSEEPDTLLDVYEPYLL 306

Query: 306 QQGFIQRTPRGRLLMPIAWQHLG 328
           + GFIQR+PRGR++ P  ++HLG
Sbjct: 307 KIGFIQRSPRGRMVTPSGYRHLG 329


>gi|262341251|ref|YP_003284106.1| Holliday junction DNA helicase RuvB [Blattabacterium sp. (Blattella
           germanica) str. Bge]
 gi|262272588|gb|ACY40496.1| Holliday junction DNA helicase RuvB [Blattabacterium sp. (Blattella
           germanica) str. Bge]
          Length = 322

 Score =  349 bits (895), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 171/313 (54%), Positives = 228/313 (72%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           L P+T+++F GQ +   NLK+FI+AAK R +ALDH+LF GPPGLGKTTLA +VA EL VN
Sbjct: 9   LNPKTIQDFVGQNDILENLKIFIQAAKKRKDALDHILFHGPPGLGKTTLAHIVANELHVN 68

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
              TSG V+ K GDLA LL +L+  DV+FIDEIHRLS IVEE LY AME++++D+++  G
Sbjct: 69  ITVTSGSVLDKPGDLAGLLIHLKLNDVIFIDEIHRLSPIVEEYLYSAMENYKIDIIIDSG 128

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            +A+SV+I+LS FTLI ATTR GLLT P++ RFGI  RL++YE + LK IV R AKL  +
Sbjct: 129 SNAKSVQIDLSPFTLIGATTRSGLLTAPMRSRFGINFRLSYYEKKFLKNIVNRSAKLLNI 188

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T++A+ EIA RSRGTPRIA  LLRR+RDFA++    TI   I +  L  L +DK G D
Sbjct: 189 PITEKASYEIANRSRGTPRIANALLRRIRDFAQIKGNGTIDLNICNLGLQALNVDKNGLD 248

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           ++D R L  I  +F GGPVGI TI+  +SE  D IE++ EP++I++G++ RTPRGR    
Sbjct: 249 EMDNRILLSIIDHFKGGPVGINTIATAVSENSDTIEEVYEPFLIKEGYLIRTPRGRKATK 308

Query: 322 IAWQHLGIDIPHR 334
           +A+QHL  D+  +
Sbjct: 309 LAYQHLKRDLKKK 321


>gi|56963320|ref|YP_175051.1| Holliday junction DNA helicase RuvB [Bacillus clausii KSM-K16]
 gi|68715275|sp|Q5WHR5|RUVB_BACSK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|56909563|dbj|BAD64090.1| holliday junction DNA helicase RuvB [Bacillus clausii KSM-K16]
          Length = 333

 Score =  349 bits (895), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 172/309 (55%), Positives = 226/309 (73%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L ++ GQ     NL VF+EAAK R EALDHVL  GPPGLGKTTLA ++A E+G  
Sbjct: 21  LRPKRLADYIGQETVKHNLAVFMEAAKMREEALDHVLLYGPPGLGKTTLAAIIAAEMGGE 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R+TSGP I ++GDLAA+LT LE  DVLFIDEIHRL+  VEE+LYPAMEDF LD+++G+G
Sbjct: 81  LRTTSGPAIERSGDLAAILTALEPGDVLFIDEIHRLNRTVEEVLYPAMEDFCLDIVIGKG 140

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARSV+++L  FTL+ ATTR G+L++PL+DRFG+  RL +Y+ E+L  IV+R A +   
Sbjct: 141 PTARSVRLDLPPFTLVGATTRAGMLSSPLRDRFGVMARLEYYKPEELAQIVERSATVFQA 200

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +   AA E+A RSRGTPRIA RLLRRVRDFA+V     I+ E A +AL +L +D +G D
Sbjct: 201 TLEPSAALELARRSRGTPRIANRLLRRVRDFAQVGGEAAISLERACSALEQLHVDPLGLD 260

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   F GGPVG+ETI+A + E    IE++ EPY++Q GFIQRTPRGR+  P
Sbjct: 261 HIDDKLLKGMIEKFNGGPVGLETIAATIGEEAATIEEVYEPYLLQIGFIQRTPRGRIATP 320

Query: 322 IAWQHLGID 330
             + H G++
Sbjct: 321 ACYAHYGVE 329


>gi|189464949|ref|ZP_03013734.1| hypothetical protein BACINT_01293 [Bacteroides intestinalis DSM
           17393]
 gi|189437223|gb|EDV06208.1| hypothetical protein BACINT_01293 [Bacteroides intestinalis DSM
           17393]
          Length = 343

 Score =  349 bits (895), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 175/322 (54%), Positives = 235/322 (72%), Gaps = 4/322 (1%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L SR    E+A    LRP + E+F+GQ +   NL++F++AA+ R EALDHVL  GPPGLG
Sbjct: 13  LTSRERDFENA----LRPLSFEDFSGQDKVVDNLRIFVKAARLRGEALDHVLLHGPPGLG 68

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTTL+ ++A ELGV F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS +VEE LY
Sbjct: 69  KTTLSNIIANELGVGFKVTSGPVLDKPGDLAGVLTSLEPNDVLFIDEIHRLSPVVEEYLY 128

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            AMED+++D+M+ +GPSARS++I+LS FTL+ ATTR GLLT PL+ RFGI + L +Y+ +
Sbjct: 129 SAMEDYRIDIMIDKGPSARSIQIDLSPFTLVGATTRSGLLTAPLRARFGINLHLEYYDDD 188

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
            L  I++R A +  +  +  AA EIA RSRGTPRIA  LLRRVRDFA+V  + +I  EIA
Sbjct: 189 VLSGIIRRSAGILNVPCSTRAASEIASRSRGTPRIANALLRRVRDFAQVKGSGSIDTEIA 248

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           + AL  L IDK G D++D + L  I   F GGPVG+ TI+  L E    +E++ EP++I+
Sbjct: 249 NFALEALNIDKYGLDEIDNKILCTIIDKFKGGPVGLTTIATALGEDAGTVEEVYEPFLIK 308

Query: 307 QGFIQRTPRGRLLMPIAWQHLG 328
           +GF++RTPRGR +  +A++HLG
Sbjct: 309 EGFLKRTPRGREVTELAYKHLG 330


>gi|146317710|ref|YP_001197422.1| Holliday junction DNA helicase RuvB [Streptococcus suis 05ZYH33]
 gi|146319898|ref|YP_001199609.1| Holliday junction DNA helicase RuvB [Streptococcus suis 98HAH33]
 gi|253750965|ref|YP_003024106.1| Holliday junction DNA helicase, subunit B [Streptococcus suis SC84]
 gi|253752865|ref|YP_003026005.1| Holliday junction DNA helicase, subunit B [Streptococcus suis P1/7]
 gi|253754690|ref|YP_003027830.1| Holliday junction DNA helicase, subunit B [Streptococcus suis
           BM407]
 gi|172045570|sp|A4VSD3|RUVB_STRSY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|172045585|sp|A4VYM0|RUVB_STRS2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|145688516|gb|ABP89022.1| Holliday junction resolvasome, helicase subunit [Streptococcus suis
           05ZYH33]
 gi|145690704|gb|ABP91209.1| Holliday junction resolvasome, helicase subunit [Streptococcus suis
           98HAH33]
 gi|251815254|emb|CAZ50819.1| Holliday junction DNA helicase, subunit B [Streptococcus suis SC84]
 gi|251817154|emb|CAZ54875.1| Holliday junction DNA helicase, subunit B [Streptococcus suis
           BM407]
 gi|251819110|emb|CAR44174.1| Holliday junction DNA helicase, subunit B [Streptococcus suis P1/7]
 gi|292557509|gb|ADE30510.1| Holliday junction DNA helicase RuvB [Streptococcus suis GZ1]
 gi|319757217|gb|ADV69159.1| Holliday junction DNA helicase RuvB [Streptococcus suis JS14]
          Length = 333

 Score =  349 bits (895), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 172/307 (56%), Positives = 220/307 (71%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E+ GQ +    LK+FIEAAK R EALDH L  GPPGLGKTT+A V+A ELGVN
Sbjct: 21  LRPQKLNEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANELGVN 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGPVI KAGDL ALL +LE  DVLFIDEIHR+ + VEEILY AMEDF +D+M+G G
Sbjct: 81  IKQTSGPVIEKAGDLVALLNDLEPGDVLFIDEIHRMPMAVEEILYSAMEDFYIDIMIGAG 140

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            ++RSV + L  FTLI ATTR G+L+NPL+ RFGI   + +YE+ DL  IV+R A +  +
Sbjct: 141 EASRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYELADLTEIVERTADIFDM 200

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T EAA E+A RSRGTPRIA RLL+RVRDFA++     I   I D AL  L +D+ G D
Sbjct: 201 EITHEAAIELARRSRGTPRIANRLLKRVRDFAQIMGDGLIDDSITDKALTMLDVDREGLD 260

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQQGF+ RT  GR+   
Sbjct: 261 YVDQKILRTMIEMYGGGPVGLNTLSVNIAEERETVEDMYEPYLIQQGFLMRTRTGRVATA 320

Query: 322 IAWQHLG 328
            A++HLG
Sbjct: 321 KAYEHLG 327


>gi|218258529|ref|ZP_03474885.1| hypothetical protein PRABACTJOHN_00540 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225405|gb|EEC98055.1| hypothetical protein PRABACTJOHN_00540 [Parabacteroides johnsonii
           DSM 18315]
          Length = 361

 Score =  348 bits (894), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 173/307 (56%), Positives = 225/307 (73%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP +  +F+GQ +   NLK+F+ AA+ R EALDHVL  GPPGLGKTTL+ ++A ELGV 
Sbjct: 43  LRPLSFHDFSGQAKVVENLKIFVMAARMRKEALDHVLLHGPPGLGKTTLSNIIANELGVG 102

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS IVEE LY AMED+++D+M+ +G
Sbjct: 103 FKVTSGPVLDKPGDLAGVLTSLEKNDVLFIDEIHRLSPIVEEYLYSAMEDYRIDIMIDKG 162

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSARS++I+L+ FTL+ ATTR GLLT+PL+ RFGI + L +YE+E L  IV R A +  +
Sbjct: 163 PSARSIQIDLAPFTLVGATTRSGLLTSPLRARFGINMHLEYYEMETLTKIVLRSADILNV 222

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
                AA EIA RSRGTPRIA  LLRRVRDFA+V  +  I + I+  AL  L ID+ G D
Sbjct: 223 KCELSAAREIASRSRGTPRIANALLRRVRDFAQVKGSGEIDKAISCYALEALNIDRYGLD 282

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           Q+D + LT I   F GGPVG+ TI+  L E    +E++ EP++I++GFI+RTPRGR +  
Sbjct: 283 QIDNKLLTTIIDKFNGGPVGLTTIATALGEDPGTLEEVYEPFLIKEGFIKRTPRGREVTE 342

Query: 322 IAWQHLG 328
           +A+ HLG
Sbjct: 343 LAYTHLG 349


>gi|223044105|ref|ZP_03614144.1| holliday junction DNA helicase RuvB [Staphylococcus capitis SK14]
 gi|222442499|gb|EEE48605.1| holliday junction DNA helicase RuvB [Staphylococcus capitis SK14]
          Length = 334

 Score =  348 bits (894), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 170/328 (51%), Positives = 230/328 (70%), Gaps = 2/328 (0%)

Query: 2   MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD+  ++ +    ED+D  L LRP  L+++ GQ    SNL+VFI+AAK R E LDHVL  
Sbjct: 1   MDKR-MVDQQFHNEDSDFELSLRPTKLKQYIGQTSIKSNLEVFIKAAKLREEPLDHVLLF 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTL+ ++A E+ VN R+ SGP + + GDLAA+L+ L+  DVLFIDEIHRLS +
Sbjct: 60  GPPGLGKTTLSNIIANEMEVNIRTISGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSV 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDF LD+++G+G  ARS++I+L  FTL+ ATTR G LT PL+DRFG+ +RL
Sbjct: 120 VEEVLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATTRAGSLTGPLRDRFGVHLRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y   DLK I+ R A + G  + +E+A E+A RSRGTPR+A RLL+RVRDF +V     
Sbjct: 180 EYYNENDLKEIITRTADVLGTGIDEESALELARRSRGTPRVANRLLKRVRDFQQVNEDDQ 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I  E    AL  L +DK G D +D + +  I   + GGPVG++TI+  + E R  IED+ 
Sbjct: 240 IYIETTKRALQLLQVDKEGLDYIDHKMMNCIINQYNGGPVGLDTIAVSIGEERITIEDVY 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
           EP++IQ+GF++RTPRGR   P A++H  
Sbjct: 300 EPFLIQKGFLERTPRGRKATPFAYEHFN 327


>gi|307564788|ref|ZP_07627316.1| Holliday junction DNA helicase RuvB [Prevotella amnii CRIS 21A-A]
 gi|307346510|gb|EFN91819.1| Holliday junction DNA helicase RuvB [Prevotella amnii CRIS 21A-A]
          Length = 345

 Score =  348 bits (894), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 171/307 (55%), Positives = 222/307 (72%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP    +F+GQ +   NL VF+EAAK R E LDH L  GPPGLGKTTL+ ++A ELGV 
Sbjct: 23  LRPLKFSDFSGQDKVVENLSVFVEAAKYRGEPLDHTLLHGPPGLGKTTLSNIIANELGVG 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS +VEE LY AMED+++D+M+ +G
Sbjct: 83  FKITSGPVLDKPGDLAGILTSLEPNDVLFIDEIHRLSPVVEEYLYSAMEDYRIDIMIDKG 142

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSARS++I L+ FTLI ATTR GLLT PL+ RFGI + L +Y  E ++ I++R A L  +
Sbjct: 143 PSARSIQIELNPFTLIGATTRSGLLTAPLRARFGINMHLEYYNAETIQRIIKRSAALLKV 202

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + DEAA EIA+RSRGTPRI   LLRRVRDFA+V    TIT  IA  +L  L ID+ G D
Sbjct: 203 PIIDEAAEEIALRSRGTPRICNSLLRRVRDFAQVKGNGTITPNIATMSLQALNIDQYGLD 262

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           ++D + L  I   FGGGPVG+ TI+  + E    +E++ EP++I +GFI+RT RGR+   
Sbjct: 263 EIDNKILLTIIDKFGGGPVGVSTIATAIGEDSGTVEEVYEPFLIMEGFIKRTTRGRVATQ 322

Query: 322 IAWQHLG 328
           +A++HLG
Sbjct: 323 LAYEHLG 329


>gi|223932360|ref|ZP_03624363.1| Holliday junction DNA helicase RuvB [Streptococcus suis 89/1591]
 gi|223899041|gb|EEF65399.1| Holliday junction DNA helicase RuvB [Streptococcus suis 89/1591]
          Length = 333

 Score =  348 bits (894), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 172/307 (56%), Positives = 220/307 (71%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E+ GQ +    LK+FIEAAK R EALDH L  GPPGLGKTT+A V+A ELGVN
Sbjct: 21  LRPQKLNEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANELGVN 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGPVI KAGDL ALL +LE  DVLFIDEIHR+ + VEEILY AMEDF +D+M+G G
Sbjct: 81  IKQTSGPVIEKAGDLVALLNDLEPGDVLFIDEIHRMPMAVEEILYSAMEDFYIDIMIGAG 140

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            ++RSV + L  FTLI ATTR G+L+NPL+ RFGI   + +YE+ DL  IV+R A +  +
Sbjct: 141 EASRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYELADLTEIVERTADIFDM 200

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T EAA E+A RSRGTPRIA RLL+RVRDFA++     I   I D AL  L +D+ G D
Sbjct: 201 EITHEAAIELARRSRGTPRIANRLLKRVRDFAQIMGDGLIDDNITDKALTMLDVDREGLD 260

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQQGF+ RT  GR+   
Sbjct: 261 YVDQKILRTMIEMYGGGPVGLNTLSVNIAEERETVEDMYEPYLIQQGFLMRTRTGRVATA 320

Query: 322 IAWQHLG 328
            A++HLG
Sbjct: 321 KAYEHLG 327


>gi|160882933|ref|ZP_02063936.1| hypothetical protein BACOVA_00895 [Bacteroides ovatus ATCC 8483]
 gi|237720595|ref|ZP_04551076.1| holliday junction DNA helicase ruvB [Bacteroides sp. 2_2_4]
 gi|260172636|ref|ZP_05759048.1| Holliday junction DNA helicase RuvB [Bacteroides sp. D2]
 gi|293373382|ref|ZP_06619738.1| Holliday junction DNA helicase RuvB [Bacteroides ovatus SD CMC 3f]
 gi|299145305|ref|ZP_07038373.1| holliday junction DNA helicase RuvB [Bacteroides sp. 3_1_23]
 gi|315920926|ref|ZP_07917166.1| holliday junction DNA helicase ruvB [Bacteroides sp. D2]
 gi|156111616|gb|EDO13361.1| hypothetical protein BACOVA_00895 [Bacteroides ovatus ATCC 8483]
 gi|229450346|gb|EEO56137.1| holliday junction DNA helicase ruvB [Bacteroides sp. 2_2_4]
 gi|292631668|gb|EFF50290.1| Holliday junction DNA helicase RuvB [Bacteroides ovatus SD CMC 3f]
 gi|298515796|gb|EFI39677.1| holliday junction DNA helicase RuvB [Bacteroides sp. 3_1_23]
 gi|313694801|gb|EFS31636.1| holliday junction DNA helicase ruvB [Bacteroides sp. D2]
          Length = 343

 Score =  348 bits (894), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 171/307 (55%), Positives = 228/307 (74%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP + E+F+GQ +   NL++F++AA+ R EALDHVL  GPPGLGKTTL+ ++A ELGV 
Sbjct: 24  LRPLSFEDFSGQDKVVENLRIFVKAARLRGEALDHVLLHGPPGLGKTTLSNIIANELGVG 83

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS +VEE LY AMED+++D+M+ +G
Sbjct: 84  FKVTSGPVLDKPGDLAGVLTSLEPNDVLFIDEIHRLSPVVEEYLYSAMEDYRIDIMIDKG 143

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSARS++I+L+ FTL+ ATTR GLLT PL+ RFGI + L +Y+ + L  I++R A +  +
Sbjct: 144 PSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGINLHLEYYDDDILSNIIRRSASILDV 203

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
             +  AA EIA RSRGTPRIA  LLRRVRDFA+V  + +I  EIA  AL  L IDK G D
Sbjct: 204 PCSVRAASEIASRSRGTPRIANALLRRVRDFAQVKGSGSIDTEIAQFALEALNIDKYGLD 263

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           ++D + L  I   F GGPVGI TI+  L E    IE++ EP++I++GF++RTPRGR +  
Sbjct: 264 EIDNKILCTIIDKFKGGPVGITTIATALGEDAGTIEEVYEPFLIKEGFMKRTPRGREVTE 323

Query: 322 IAWQHLG 328
           +A++HLG
Sbjct: 324 LAYKHLG 330


>gi|291522296|emb|CBK80589.1| Holliday junction DNA helicase, RuvB subunit [Coprococcus catus
           GD/7]
          Length = 333

 Score =  348 bits (894), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 168/324 (51%), Positives = 236/324 (72%), Gaps = 1/324 (0%)

Query: 7   LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           +++   ++ED  I + LRP+ L+++ GQ +    L ++IEAA+ R E LDHVLF GPPGL
Sbjct: 5   IITTEFAEEDVKIENHLRPQLLKDYIGQQKVKETLSIYIEAARQREEPLDHVLFYGPPGL 64

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLA ++A E+GV  + TSGP I K G++AA+L NL + DVLFIDEIHRL+  VEE+L
Sbjct: 65  GKTTLAGIIANEMGVKMKVTSGPAIEKPGEIAAILNNLSEGDVLFIDEIHRLNRQVEEVL 124

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           YPAMEDF +D+++G+G +ARS++++L +FTL+ ATTR GLLT PL+DRFG+  RL FY  
Sbjct: 125 YPAMEDFAIDIVIGKGAAARSIRLDLPKFTLVGATTRAGLLTAPLRDRFGVVSRLEFYST 184

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           +DL TI++R A++  + + +  A E+A RSRGTPR+A RLL+RVRD+A+V H   IT ++
Sbjct: 185 QDLMTIIRRSAEVLHVKIDERGAEELARRSRGTPRLANRLLKRVRDYAQVCHDGVITLQV 244

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           A+ AL  L +DK G DQ D   L  +   F GGPVG++T++A L E    +E++ EPY+I
Sbjct: 245 ANEALDLLDVDKYGLDQSDRNILLTMMNKFRGGPVGLDTLAAALGEDSGTLEEVYEPYLI 304

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGI 329
           + GFIQRTPRGR++  +A  H GI
Sbjct: 305 KNGFIQRTPRGRVVTELARAHCGI 328


>gi|302023148|ref|ZP_07248359.1| Holliday junction DNA helicase RuvB [Streptococcus suis 05HAS68]
          Length = 323

 Score =  348 bits (894), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 172/307 (56%), Positives = 220/307 (71%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E+ GQ +    LK+FIEAAK R EALDH L  GPPGLGKTT+A V+A ELGVN
Sbjct: 11  LRPQKLNEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANELGVN 70

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGPVI KAGDL ALL +LE  DVLFIDEIHR+ + VEEILY AMEDF +D+M+G G
Sbjct: 71  IKQTSGPVIEKAGDLVALLNDLEPGDVLFIDEIHRMPMAVEEILYSAMEDFYIDIMIGAG 130

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            ++RSV + L  FTLI ATTR G+L+NPL+ RFGI   + +YE+ DL  IV+R A +  +
Sbjct: 131 EASRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYELADLTEIVERTADIFDM 190

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T EAA E+A RSRGTPRIA RLL+RVRDFA++     I   I D AL  L +D+ G D
Sbjct: 191 EITHEAAIELARRSRGTPRIANRLLKRVRDFAQIMGDGLIDDNITDKALTMLDVDREGLD 250

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQQGF+ RT  GR+   
Sbjct: 251 YVDQKILRTMIEMYGGGPVGLNTLSVNIAEERETVEDMYEPYLIQQGFLMRTRTGRVATA 310

Query: 322 IAWQHLG 328
            A++HLG
Sbjct: 311 KAYEHLG 317


>gi|323350894|ref|ZP_08086552.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           sanguinis VMC66]
 gi|322122876|gb|EFX94582.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           sanguinis VMC66]
 gi|324992688|gb|EGC24609.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           sanguinis SK405]
          Length = 332

 Score =  348 bits (894), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 169/309 (54%), Positives = 227/309 (73%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L+E+ GQ +  + LK+FIEAAK R EALDH L  GPPGLGKTT+A V+A ELGVN
Sbjct: 20  LRPQYLQEYIGQDKVKNQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANELGVN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGPVI K+GDL A+L +LE  DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G
Sbjct: 80  LKQTSGPVIEKSGDLVAILNDLEPGDVLFIDEIHRLPMAVEEVLYSAMEDFYIDIMIGSG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            ++RSV ++L  FTLI ATTR G+L+NPL+ RFGI   + +YE  DL  IV+R A++  +
Sbjct: 140 ETSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYEAGDLTEIVERTAEIFEM 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
           A+T EAA E+A+RSRGTPRIA RLL+RVRD+A++     I  +I D AL  L +D+ G D
Sbjct: 200 AITHEAAKELALRSRGTPRIANRLLKRVRDYAQIMGNGLIDDKITDQALSMLDVDQEGLD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GF+ RT  GR+   
Sbjct: 260 YVDQKILKTMIEVYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFVMRTRTGRVATR 319

Query: 322 IAWQHLGID 330
            A++HLG +
Sbjct: 320 KAYEHLGYE 328


>gi|94971570|ref|YP_593618.1| Holliday junction DNA helicase RuvB [Candidatus Koribacter
           versatilis Ellin345]
 gi|123381145|sp|Q1IHV6|RUVB_ACIBL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|94553620|gb|ABF43544.1| Holliday junction DNA helicase subunit RuvB [Candidatus Koribacter
           versatilis Ellin345]
          Length = 360

 Score =  348 bits (894), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 172/332 (51%), Positives = 237/332 (71%), Gaps = 1/332 (0%)

Query: 4   REGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           RE L+S    ++D+   L LRP+ L EF GQ +   NL V IEAA++R EALDHVL  GP
Sbjct: 24  RERLVSAIPVEDDSSFELKLRPQWLREFIGQPKVKENLAVAIEAARSRGEALDHVLLYGP 83

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++A E+   F+ TSGP +   GDL A+LTN+ D+ VLFIDE+HRL   +E
Sbjct: 84  PGLGKTTLANIIANEMQAQFQQTSGPTLQIKGDLTAILTNVRDKQVLFIDEVHRLQPALE 143

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LY A+ED++LD+++G+GPSAR+  I+++ FTL+AATTR GLL+ PL+ RFGI +RL F
Sbjct: 144 ELLYSAVEDYKLDIIIGQGPSARTHTIDVAPFTLVAATTRAGLLSAPLRSRFGIVLRLEF 203

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  EDLK I++R A++  + + +  A EIA R RGTPRIA RLLRRVRD+A+V  A  I 
Sbjct: 204 YTTEDLKIILKRSAEILNVEIDEGGAAEIATRCRGTPRIANRLLRRVRDYAQVRGAGKID 263

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           RE A  AL  L +D+ GFD++D R +  I   + GGPVG+ T++A L+E  DAIE++ EP
Sbjct: 264 RETAQKALEMLEVDQHGFDEVDRRLMLTIIEKYQGGPVGLNTLAASLAEETDAIEEIYEP 323

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           ++IQ GF+ RTPRGR+   +A+++  +  P +
Sbjct: 324 FLIQLGFLDRTPRGRVATHLAYEYFKMKPPKK 355


>gi|213963690|ref|ZP_03391941.1| holliday junction DNA helicase RuvB [Capnocytophaga sputigena
           Capno]
 gi|213953685|gb|EEB65016.1| holliday junction DNA helicase RuvB [Capnocytophaga sputigena
           Capno]
          Length = 341

 Score =  348 bits (894), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 175/319 (54%), Positives = 228/319 (71%), Gaps = 1/319 (0%)

Query: 11  NVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           N S ++ DI   LRP + ++F GQ     NLKVF++AA  R EALDH LF GPPGLGKTT
Sbjct: 11  NYSAQELDIERALRPLSFDDFAGQEAVLENLKVFVKAANMRHEALDHTLFHGPPGLGKTT 70

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           LA ++A ELGV  + TSGPV+ K GDLA LLTNL++RDVLFIDEIHRLS +VEE LY AM
Sbjct: 71  LAHILANELGVGIKITSGPVLDKPGDLAGLLTNLQERDVLFIDEIHRLSPVVEEYLYSAM 130

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           ED+++D+M+  GP+AR+V+INL+ FTLI ATTR GLLT P++ RFGI  RL +Y  E L 
Sbjct: 131 EDYKIDIMIESGPNARTVQINLNPFTLIGATTRSGLLTAPMRARFGIQSRLQYYSTELLA 190

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            IVQR A +  + ++ EAA E+A RSRGTPRIA  LLRR+RDFA++     I   I    
Sbjct: 191 DIVQRSASILKVPISMEAAIELASRSRGTPRIANALLRRIRDFAQIKGNGEIDIAITRFG 250

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           L  L +D  G D++D + L+ +   F GGPVGI T++  +SE  + IE++ EP++IQ+GF
Sbjct: 251 LKALNVDAHGLDEMDNKILSTLIDKFKGGPVGITTLATAVSESAETIEEVYEPFLIQEGF 310

Query: 310 IQRTPRGRLLMPIAWQHLG 328
           I RTPRGR +  +A++HLG
Sbjct: 311 IVRTPRGREVTELAYKHLG 329


>gi|329576229|gb|EGG57747.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX1467]
          Length = 338

 Score =  348 bits (893), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 175/331 (52%), Positives = 226/331 (68%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M + E LLS    + +A I   LRP+ L ++ GQ +    L ++IEAAK+R EALDH L 
Sbjct: 1   MTEEERLLSAASQEAEASIEKSLRPQFLAQYIGQDKVKQELTIYIEAAKSRNEALDHTLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTT+A V+A E+ VN R+TSGP I +AGDL A+L  LE  DVLFIDEIHRL  
Sbjct: 61  YGPPGLGKTTMAMVIANEMNVNIRTTSGPAIERAGDLVAILNELEPGDVLFIDEIHRLPR 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LY AMEDF +D+MVG+G +A  V   L  FTL+ ATTR G+L+ PL+DRFGI   
Sbjct: 121 VVEEMLYSAMEDFYIDIMVGQGTTAHPVHFPLPPFTLVGATTRAGMLSAPLRDRFGIISH 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           + +Y+ +DLK IV R A +    + +E A EIA RSRGTPRIA RLL+RVRDFA+V    
Sbjct: 181 MEYYQEQDLKEIVLRSADIFQTEIFEEGAFEIARRSRGTPRIANRLLKRVRDFAQVQSDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I R IAD AL  L +D  G D +D + L  +   +GGGPVG+ T+S  + E  + +ED+
Sbjct: 241 KIDRAIADKALTLLQVDHQGLDYVDQKLLKTMIDLYGGGPVGLSTLSVNIGEETETVEDM 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
            EPY+IQ+GFI+RTPRGR+  P A+ H G D
Sbjct: 301 YEPYLIQKGFIKRTPRGRIATPFAYAHFGYD 331


>gi|325954063|ref|YP_004237723.1| Holliday junction ATP-dependent DNA helicase ruvB [Weeksella virosa
           DSM 16922]
 gi|323436681|gb|ADX67145.1| Holliday junction ATP-dependent DNA helicase ruvB [Weeksella virosa
           DSM 16922]
          Length = 344

 Score =  348 bits (893), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 167/308 (54%), Positives = 225/308 (73%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+  ++F GQ     NL++F++A+K R EALDHVL  GPPGLGKTTLA ++A ELGV 
Sbjct: 23  VRPQQFDDFAGQAHILENLEIFVKASKLRNEALDHVLLHGPPGLGKTTLANIIANELGVG 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGPV+ K GDLA LLTNLE  DVLFIDEIHR+S ++EE LY AMEDF++D+M+  G
Sbjct: 83  IKITSGPVLDKPGDLAGLLTNLEPNDVLFIDEIHRMSPVIEEYLYSAMEDFKIDIMIESG 142

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARSV+I L+ FTLI ATTR GLLT PL+ RFGI  R  +Y +E L +I++R +++   
Sbjct: 143 PNARSVQIGLNPFTLIGATTRSGLLTAPLRARFGINFRFEYYSVELLSSIIERSSRILHT 202

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + +EAA EIA RSRGTPRIA  LLRR RDFA++     IT++IA+ +L  L +D+ G D
Sbjct: 203 PIDEEAAIEIASRSRGTPRIANALLRRTRDFAQIKGDGKITKKIANYSLSALKVDQNGLD 262

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           ++D R LT + + F GGPVGI TI+  + E    +E++ EPY+IQ+G++ RT RGR+   
Sbjct: 263 EMDNRILTTLIKKFNGGPVGITTIATAVGENGGTLEEVYEPYLIQEGYLMRTARGRVATE 322

Query: 322 IAWQHLGI 329
            A++HLGI
Sbjct: 323 KAYRHLGI 330


>gi|330831901|ref|YP_004400726.1| Holliday junction DNA helicase subunit B [Streptococcus suis ST3]
 gi|329306124|gb|AEB80540.1| Holliday junction DNA helicase, subunit B [Streptococcus suis ST3]
          Length = 333

 Score =  348 bits (893), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 172/307 (56%), Positives = 219/307 (71%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E+ GQ +    LK+FIEAAK R EALDH L  GPPGLGKTT+A V+A ELGVN
Sbjct: 21  LRPQKLNEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANELGVN 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGPVI KAGDL ALL +LE  DVLFIDEIHR+ + VEEILY AMEDF +D+M+G G
Sbjct: 81  IKQTSGPVIEKAGDLVALLNDLEPGDVLFIDEIHRMPMAVEEILYSAMEDFYIDIMIGAG 140

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            + RSV + L  FTLI ATTR G+L+NPL+ RFGI   + +YE+ DL  IV+R A +  +
Sbjct: 141 EAGRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYELADLTEIVERTADIFDM 200

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T EAA E+A RSRGTPRIA RLL+RVRDFA++     I   I D AL  L +D+ G D
Sbjct: 201 EITHEAAIELARRSRGTPRIANRLLKRVRDFAQIMGDGLIDDNITDKALTMLDVDREGLD 260

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQQGF+ RT  GR+   
Sbjct: 261 YVDQKILRTMIEMYGGGPVGLNTLSVNIAEERETVEDMYEPYLIQQGFLMRTRTGRVATA 320

Query: 322 IAWQHLG 328
            A++HLG
Sbjct: 321 KAYEHLG 327


>gi|325299225|ref|YP_004259142.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacteroides
           salanitronis DSM 18170]
 gi|324318778|gb|ADY36669.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacteroides
           salanitronis DSM 18170]
          Length = 341

 Score =  348 bits (893), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 174/307 (56%), Positives = 227/307 (73%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP   E+F+GQ +   NL++F++AA+ RAEALDHVL  GPPGLGKTTL+ ++A ELGV 
Sbjct: 23  LRPLQFEDFSGQDKVVDNLRIFVKAARLRAEALDHVLLHGPPGLGKTTLSNIIANELGVG 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           FR TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS +VEE LY AMED+++D+M+ +G
Sbjct: 83  FRVTSGPVLDKPGDLAGVLTSLEPNDVLFIDEIHRLSPVVEEYLYSAMEDYRIDIMIDKG 142

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSARS++++L+ FTL+ ATTR GLLT PL+ RFGI + L +YE   L  I+ R AK+ G+
Sbjct: 143 PSARSIQLDLNPFTLVGATTRSGLLTAPLRARFGINLHLEYYEDSTLTKIILRSAKILGV 202

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
               EAA EIA RSRGTPRIA  LLRRVRDFA+V  +  I  +IA  AL  L ID+ G D
Sbjct: 203 PCDTEAAGEIASRSRGTPRIANALLRRVRDFAQVKGSGRIDLKIAQFALEALNIDRYGLD 262

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           Q+D + L  I   F GGPVG+ TI+  L E    IE++ EP++I++GF++RTPRGR +  
Sbjct: 263 QIDNKLLCTIIDKFRGGPVGLTTIATALGEDPGTIEEVYEPFLIKEGFLKRTPRGREVTE 322

Query: 322 IAWQHLG 328
           +A++HLG
Sbjct: 323 LAYRHLG 329


>gi|317495144|ref|ZP_07953514.1| Holliday junction DNA helicase RuvB [Gemella moribillum M424]
 gi|316914566|gb|EFV36042.1| Holliday junction DNA helicase RuvB [Gemella moribillum M424]
          Length = 333

 Score =  348 bits (893), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 168/320 (52%), Positives = 234/320 (73%), Gaps = 1/320 (0%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           N  +E+ + SL RP+ L ++ GQ +  +NLK+FIEAAK RAE LDH L  GPPGLGKTTL
Sbjct: 11  NDGEENEEQSL-RPKFLNQYIGQEQIKNNLKIFIEAAKLRAEVLDHCLLYGPPGLGKTTL 69

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           A ++A E+GV  + TSGP I K+GDLAA+LT+LE  DVLFIDEIHR+S  +EEILY AME
Sbjct: 70  ATIIANEMGVGIKYTSGPAIEKSGDLAAILTSLEPGDVLFIDEIHRISRSIEEILYSAME 129

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           DF LD+++G+G  +R+++I L  FTL+ ATTR G LT PL+DRFG+  RL FY +++LK 
Sbjct: 130 DFYLDIVIGKGDESRNIRIELPPFTLVGATTRAGALTAPLRDRFGVHCRLEFYNVDELKN 189

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           I+ R + +    + ++++ EIAMRSRGTPRIA RLL+RVRDFA+V +   IT+++A ++L
Sbjct: 190 IIDRTSDIFNCEIDEQSSYEIAMRSRGTPRIANRLLKRVRDFAQVKNDGVITQKLATSSL 249

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
             L +D  G D +D + L  + + + G  VG+ETI+  + E    IED+ EPY++++GFI
Sbjct: 250 DLLQVDGQGLDSIDYKILECLIKRYDGRAVGLETIAITIGEESITIEDVYEPYLVKEGFI 309

Query: 311 QRTPRGRLLMPIAWQHLGID 330
           +RTPRGR   P A++HLGI+
Sbjct: 310 ERTPRGRRATPKAYKHLGIE 329


>gi|237716838|ref|ZP_04547319.1| holliday junction DNA helicase ruvB [Bacteroides sp. D1]
 gi|262405608|ref|ZP_06082158.1| Holliday junction DNA helicase RuvB [Bacteroides sp. 2_1_22]
 gi|294644445|ref|ZP_06722208.1| Holliday junction DNA helicase RuvB [Bacteroides ovatus SD CC 2a]
 gi|294810440|ref|ZP_06769097.1| Holliday junction DNA helicase RuvB [Bacteroides xylanisolvens SD
           CC 1b]
 gi|298483808|ref|ZP_07001980.1| holliday junction DNA helicase RuvB [Bacteroides sp. D22]
 gi|229442821|gb|EEO48612.1| holliday junction DNA helicase ruvB [Bacteroides sp. D1]
 gi|262356483|gb|EEZ05573.1| Holliday junction DNA helicase RuvB [Bacteroides sp. 2_1_22]
 gi|292640280|gb|EFF58535.1| Holliday junction DNA helicase RuvB [Bacteroides ovatus SD CC 2a]
 gi|294442405|gb|EFG11215.1| Holliday junction DNA helicase RuvB [Bacteroides xylanisolvens SD
           CC 1b]
 gi|295086060|emb|CBK67583.1| Holliday junction DNA helicase subunit RuvB [Bacteroides
           xylanisolvens XB1A]
 gi|298269995|gb|EFI11584.1| holliday junction DNA helicase RuvB [Bacteroides sp. D22]
          Length = 343

 Score =  348 bits (893), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 171/307 (55%), Positives = 227/307 (73%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP + E+F+GQ +   NL++F++AA+ R EALDHVL  GPPGLGKTTL+ ++A ELGV 
Sbjct: 24  LRPLSFEDFSGQDKVVENLRIFVKAARLRGEALDHVLLHGPPGLGKTTLSNIIANELGVG 83

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS +VEE LY AMED+++D+M+ +G
Sbjct: 84  FKVTSGPVLDKPGDLAGVLTSLEPNDVLFIDEIHRLSPVVEEYLYSAMEDYRIDIMIDKG 143

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSARS++I+L+ FTL+ ATTR GLLT PL+ RFGI + L +Y+ + L  I++R A +  +
Sbjct: 144 PSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGINLHLEYYDDDILSNIIRRSASILDV 203

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
             +  AA EIA RSRGTPRIA  LLRRVRDFA+V    +I  EIA  AL  L IDK G D
Sbjct: 204 PCSVRAASEIASRSRGTPRIANALLRRVRDFAQVKGTGSIDTEIAQFALEALNIDKYGLD 263

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           ++D + L  I   F GGPVGI TI+  L E    IE++ EP++I++GF++RTPRGR +  
Sbjct: 264 EIDNKILCTIIDKFKGGPVGITTIATALGEDAGTIEEVYEPFLIKEGFMKRTPRGREVTE 323

Query: 322 IAWQHLG 328
           +A++HLG
Sbjct: 324 LAYKHLG 330


>gi|160915301|ref|ZP_02077514.1| hypothetical protein EUBDOL_01310 [Eubacterium dolichum DSM 3991]
 gi|158433100|gb|EDP11389.1| hypothetical protein EUBDOL_01310 [Eubacterium dolichum DSM 3991]
          Length = 336

 Score =  348 bits (892), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 170/315 (53%), Positives = 230/315 (73%), Gaps = 1/315 (0%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           D + LRP+ L+E+ GQ +   NL++FIEAAK R EALDHVL  GPPGLGKTTL+ ++A E
Sbjct: 14  DEATLRPQHLDEYIGQRQLKENLQIFIEAAKQRNEALDHVLLYGPPGLGKTTLSYILANE 73

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           +G N ++TSGP I K+GDLAA+L+ L+  DVLFIDEIHRL   VEE+LYPAMED+ +D++
Sbjct: 74  MGGNIKTTSGPSIEKSGDLAAILSTLQPGDVLFIDEIHRLPKQVEEVLYPAMEDYCIDIL 133

Query: 138 VG-EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA 196
           VG +  + RS++++L  FTL+ ATTR G LT PL+DRFGI  +L FYE+E+L+ I+ R A
Sbjct: 134 VGKDSTTTRSIRLDLPPFTLVGATTRAGDLTAPLRDRFGIVSQLEFYELEELQQIIARTA 193

Query: 197 KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAID 256
           ++    +   A  EIA+RSRGTPRIA RL RRVRDFA+V +   I++EIA  AL RL +D
Sbjct: 194 RVMNTEIESSAVTEIALRSRGTPRIANRLFRRVRDFAQVMNDGVISKEIAAMALDRLKVD 253

Query: 257 KMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRG 316
            +G D +D +YL  I   F GGPVG+E +++ + E    +ED+ EPY++Q GFI RTPRG
Sbjct: 254 HLGLDNVDHKYLKGIIERFKGGPVGLEALASSIGEETMTLEDVYEPYLLQIGFINRTPRG 313

Query: 317 RLLMPIAWQHLGIDI 331
           R++   A+ HLG D+
Sbjct: 314 RIVTEKAYAHLGYDL 328


>gi|218295182|ref|ZP_03496018.1| Holliday junction DNA helicase RuvB [Thermus aquaticus Y51MC23]
 gi|218244385|gb|EED10910.1| Holliday junction DNA helicase RuvB [Thermus aquaticus Y51MC23]
          Length = 323

 Score =  348 bits (892), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 179/312 (57%), Positives = 230/312 (73%), Gaps = 1/312 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+TL+E+ GQ      LKV++EAAKAR E L+H+L  GPPGLGKTTLA V+A ELGVN
Sbjct: 7   LRPKTLDEYIGQERLKKKLKVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAYELGVN 66

Query: 82  FRSTSGPVIAKAGDLAALLTN-LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
            R+TSGP I K GDLAA+L N LE+ D+LFIDEIHRLS   EE LYPAMEDF +D+++G+
Sbjct: 67  IRTTSGPAIEKPGDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQ 126

Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
           GP+AR+V++ L RFTLI ATTR GL+T PL+ RFGI   L +Y +E+L   V+R A+L G
Sbjct: 127 GPAARTVRLELPRFTLIGATTRPGLITAPLRSRFGIVEHLEYYTLEELMEGVKRDARLLG 186

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGF 260
           + +T+EAA EIA RSRGT RIA RL RRVRDFA+VA  + IT E A  AL  L +D++G 
Sbjct: 187 VGITEEAAREIAKRSRGTMRIAKRLFRRVRDFAQVAGEEVITGERAKEALNALGLDELGL 246

Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320
           ++ D   L ++   FGGGPVG+ T++  LSE    +E++ EPY+IQQG I+RTPRGR+  
Sbjct: 247 EKRDREILEVLIGRFGGGPVGLGTLATALSEDPGTLEEVHEPYLIQQGLIKRTPRGRVAT 306

Query: 321 PIAWQHLGIDIP 332
             A++HLG   P
Sbjct: 307 ERAYRHLGYPPP 318


>gi|153807203|ref|ZP_01959871.1| hypothetical protein BACCAC_01481 [Bacteroides caccae ATCC 43185]
 gi|149130323|gb|EDM21533.1| hypothetical protein BACCAC_01481 [Bacteroides caccae ATCC 43185]
          Length = 343

 Score =  348 bits (892), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 176/322 (54%), Positives = 234/322 (72%), Gaps = 4/322 (1%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L SR    E+A    LRP + E+F+GQ +   NL++F++AA+ R EALDHVL  GPPGLG
Sbjct: 13  LTSRERDFENA----LRPLSFEDFSGQDKVVENLRIFVKAARLRGEALDHVLLHGPPGLG 68

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTTL+ ++A ELGV F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS +VEE LY
Sbjct: 69  KTTLSNIIANELGVGFKVTSGPVLDKPGDLAGVLTSLEPNDVLFIDEIHRLSPVVEEYLY 128

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            AMED+++D+M+ +GPSARS++I+L+ FTL+ ATTR GLLT PL+ RFGI + L +Y+ +
Sbjct: 129 SAMEDYRIDIMIDKGPSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGINLHLEYYDDD 188

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
            L  I++R A +  +  +  AA EIA RSRGTPRIA  LLRRVRDFA+V  + +I  EIA
Sbjct: 189 ILSNIIRRSASILDVPCSLRAAGEIASRSRGTPRIANALLRRVRDFAQVKGSGSIDTEIA 248

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
             AL  L IDK G D++D + L  I   F GGPVGI TI+  L E    IE++ EP++I+
Sbjct: 249 QFALEALNIDKYGLDEIDNKILCTIIDKFKGGPVGITTIATALGEDAGTIEEVYEPFLIK 308

Query: 307 QGFIQRTPRGRLLMPIAWQHLG 328
           +GF++RTPRGR +  +A++HLG
Sbjct: 309 EGFMKRTPRGREVTELAYKHLG 330


>gi|29348694|ref|NP_812197.1| Holliday junction DNA helicase RuvB [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253568961|ref|ZP_04846371.1| Holliday junction DNA helicase ruvB [Bacteroides sp. 1_1_6]
 gi|298387062|ref|ZP_06996616.1| holliday junction DNA helicase RuvB [Bacteroides sp. 1_1_14]
 gi|44888482|sp|Q8A2M0|RUVB_BACTN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|29340599|gb|AAO78391.1| Holliday junction DNA helicase ruvB [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|251840980|gb|EES69061.1| Holliday junction DNA helicase ruvB [Bacteroides sp. 1_1_6]
 gi|298260212|gb|EFI03082.1| holliday junction DNA helicase RuvB [Bacteroides sp. 1_1_14]
          Length = 343

 Score =  348 bits (892), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 175/322 (54%), Positives = 234/322 (72%), Gaps = 4/322 (1%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L SR    E+A    LRP + E+F+GQ +   NL++F++AA+ R EALDHVL  GPPGLG
Sbjct: 13  LTSRERDFENA----LRPLSFEDFSGQDKVVENLRIFVKAARLRGEALDHVLLHGPPGLG 68

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTTL+ ++A ELGV F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS +VEE LY
Sbjct: 69  KTTLSNIIANELGVGFKVTSGPVLDKPGDLAGVLTSLEPNDVLFIDEIHRLSPVVEEYLY 128

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            AMED+++D+M+ +GPSARS++I+L+ FTL+ ATTR GLLT PL+ RFGI + L +Y+ +
Sbjct: 129 SAMEDYRIDIMIDKGPSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGINLHLEYYDDD 188

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
            L  I++R A +  +  +  AA EIA RSRGTPRIA  LLRRVRDFA+V  + +I  EIA
Sbjct: 189 ILSNIIRRSASILDVPCSVRAASEIASRSRGTPRIANALLRRVRDFAQVKGSGSIDTEIA 248

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
             AL  L IDK G D++D + L  I   F GGPVG+ TI+  L E    IE++ EP++I+
Sbjct: 249 QFALEALNIDKYGLDEIDNKILCTIIDKFKGGPVGLTTIATALGEDAGTIEEVYEPFLIK 308

Query: 307 QGFIQRTPRGRLLMPIAWQHLG 328
           +GF++RTPRGR +  +A++HLG
Sbjct: 309 EGFMKRTPRGREVTELAYKHLG 330


>gi|255690278|ref|ZP_05413953.1| holliday junction DNA helicase RuvB [Bacteroides finegoldii DSM
           17565]
 gi|260624181|gb|EEX47052.1| holliday junction DNA helicase RuvB [Bacteroides finegoldii DSM
           17565]
          Length = 344

 Score =  348 bits (892), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 171/307 (55%), Positives = 227/307 (73%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP + E+F+GQ +   NL++F++AA+ R EALDHVL  GPPGLGKTTL+ ++A ELGV 
Sbjct: 24  LRPLSFEDFSGQDKVVENLRIFVKAARLRGEALDHVLLHGPPGLGKTTLSNIIANELGVG 83

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS +VEE LY AMED+++D+M+ +G
Sbjct: 84  FKVTSGPVLDKPGDLAGVLTSLEPNDVLFIDEIHRLSPVVEEYLYSAMEDYRIDIMIDKG 143

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSARS++I+L+ FTL+ ATTR GLLT PL+ RFGI + L +Y+ + L  I++R A +  +
Sbjct: 144 PSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGINLHLEYYDDDILSNIIRRSASILDV 203

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
             +  AA EIA RSRGTPRIA  LLRRVRDFA+V    +I  EIA  AL  L IDK G D
Sbjct: 204 PCSVRAASEIASRSRGTPRIANALLRRVRDFAQVKGTGSIDTEIAQFALEALNIDKYGLD 263

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           ++D + L  I   F GGPVGI TI+  L E    IE++ EP++I++GF++RTPRGR +  
Sbjct: 264 EIDNKILCTIIDKFKGGPVGITTIATALGEDAGTIEEVYEPFLIKEGFMKRTPRGREVTE 323

Query: 322 IAWQHLG 328
           +A++HLG
Sbjct: 324 LAYKHLG 330


>gi|125716944|ref|YP_001034077.1| Holliday junction DNA helicase RuvB [Streptococcus sanguinis SK36]
 gi|166231561|sp|A3CK22|RUVB_STRSV RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|125496861|gb|ABN43527.1| Holliday junction DNA helicase ruvB, putative [Streptococcus
           sanguinis SK36]
 gi|325695281|gb|EGD37181.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           sanguinis SK150]
 gi|327460091|gb|EGF06430.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           sanguinis SK1]
 gi|327472240|gb|EGF17677.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           sanguinis SK408]
 gi|327488682|gb|EGF20482.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           sanguinis SK1058]
          Length = 332

 Score =  348 bits (892), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 169/309 (54%), Positives = 226/309 (73%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L+E+ GQ +    LK+FIEAAK R EALDH L  GPPGLGKTT+A V+A ELGVN
Sbjct: 20  LRPQYLQEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANELGVN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGPVI K+GDL A+L +LE  DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G
Sbjct: 80  LKQTSGPVIEKSGDLVAILNDLEPGDVLFIDEIHRLPMAVEEVLYSAMEDFYIDIMIGSG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            ++RSV ++L  FTLI ATTR G+L+NPL+ RFGI   + +YE  DL  IV+R A++  +
Sbjct: 140 ETSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYEAGDLTEIVERTAEIFEM 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
           A+T EAA E+A+RSRGTPRIA RLL+RVRD+A++     I  +I D AL  L +D+ G D
Sbjct: 200 AITHEAAKELALRSRGTPRIANRLLKRVRDYAQIMGNGLIDDKITDQALSMLDVDQEGLD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GF+ RT  GR+   
Sbjct: 260 YVDQKILKTMIEVYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFVMRTRTGRVATR 319

Query: 322 IAWQHLGID 330
            A++HLG +
Sbjct: 320 KAYEHLGYE 328


>gi|167764042|ref|ZP_02436169.1| hypothetical protein BACSTE_02425 [Bacteroides stercoris ATCC
           43183]
 gi|167698158|gb|EDS14737.1| hypothetical protein BACSTE_02425 [Bacteroides stercoris ATCC
           43183]
          Length = 343

 Score =  348 bits (892), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 170/307 (55%), Positives = 228/307 (74%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP   E+F+GQ +   NL++F++AA+ R EALDHVL  GPPGLGKTTL+ ++A ELGV 
Sbjct: 24  LRPLNFEDFSGQDKVVDNLRIFVKAARLRGEALDHVLLHGPPGLGKTTLSNIIANELGVG 83

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS +VEE LY AMED+++D+M+ +G
Sbjct: 84  FKITSGPVLDKPGDLAGVLTSLEPNDVLFIDEIHRLSPVVEEYLYSAMEDYRIDIMIDKG 143

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSARS++I+L+ FTL+ ATTR GLLT PL+ RFGI + L +Y+ + L  I++R A +  +
Sbjct: 144 PSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGINLHLEYYDDDVLSGIIRRSASILDV 203

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
             +  AA EIA RSRGTPRIA  LLRRVRDFA+V  + +I  EIA+ AL  L IDK G D
Sbjct: 204 PCSTRAASEIASRSRGTPRIANALLRRVRDFAQVKGSGSIDTEIANFALEALNIDKYGLD 263

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           ++D + L  I   F GGPVG+ TI+  L E    IE++ EP++I++GF++RTPRGR +  
Sbjct: 264 EIDNKILCTIIDKFKGGPVGLTTIATALGEDAGTIEEVYEPFLIKEGFLKRTPRGREVTE 323

Query: 322 IAWQHLG 328
           +A++HLG
Sbjct: 324 LAYKHLG 330


>gi|288906365|ref|YP_003431587.1| Holliday junction DNA helicase RuvB [Streptococcus gallolyticus
           UCN34]
 gi|306832410|ref|ZP_07465563.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|325979378|ref|YP_004289094.1| Holliday junction DNA helicase RuvB [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
 gi|288733091|emb|CBI14672.1| Holliday junction DNA helicase RuvB [Streptococcus gallolyticus
           UCN34]
 gi|304425450|gb|EFM28569.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|325179306|emb|CBZ49350.1| Holliday junction DNA helicase RuvB [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
          Length = 332

 Score =  348 bits (892), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 168/307 (54%), Positives = 224/307 (72%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L+E+ GQ +  + LK+FIEAAK R E+LDHVL  GPPGLGKTT+A V+A ELGVN
Sbjct: 20  LRPQFLKEYIGQDKVKNQLKIFIEAAKLRDESLDHVLLFGPPGLGKTTMAFVIANELGVN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGP I KAGDL A+L +LE  DVLFIDEIHR+ + VEE+LY AMEDF +D+M+G G
Sbjct: 80  LKQTSGPAIEKAGDLVAILNDLEPGDVLFIDEIHRMPMAVEEVLYSAMEDFYIDIMIGNG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            ++RSV ++L  FTLI ATTR G+L+NPL+ RFGI   + +Y++EDL  IV+R A +  +
Sbjct: 140 ETSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYDVEDLTEIVERTADIFEM 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  EAA E+A RSRGTPRIA RLL+RVRD+A++     IT++I D AL  L +D  G D
Sbjct: 200 EIVHEAAQELARRSRGTPRIANRLLKRVRDYAQIMGDGIITKDITDKALTMLDVDHEGLD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   + GGPVG+ T+S  ++E RD +ED+ EPY+IQ+GFI RT  GR+   
Sbjct: 260 YIDQKILRTMIEVYNGGPVGLGTLSVNIAEERDTVEDMYEPYLIQKGFIMRTRTGRVATE 319

Query: 322 IAWQHLG 328
            A++HLG
Sbjct: 320 KAYEHLG 326


>gi|260910790|ref|ZP_05917440.1| crossover junction endoribonuclease subunit B [Prevotella sp. oral
           taxon 472 str. F0295]
 gi|260635087|gb|EEX53127.1| crossover junction endoribonuclease subunit B [Prevotella sp. oral
           taxon 472 str. F0295]
          Length = 344

 Score =  348 bits (892), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 171/310 (55%), Positives = 227/310 (73%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP   ++F+GQ +   NL+VF+EAAK R E LDH L  GPPGLGKTTL+ ++A ELGV 
Sbjct: 23  LRPPKFQDFSGQSKVVENLEVFVEAAKYRGEPLDHTLLHGPPGLGKTTLSNIIANELGVG 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS +VEE LY AMED+++D+M+ +G
Sbjct: 83  FKITSGPVLDKPGDLAGILTSLEANDVLFIDEIHRLSPVVEEYLYSAMEDYRIDIMIDKG 142

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSARS++I+L+ FTLI ATTR GLLT PL+ RFGI + L +Y+ + L  I++R A++  +
Sbjct: 143 PSARSIQIDLNPFTLIGATTRSGLLTAPLRARFGINLHLEYYDPQTLARIIKRSARILNV 202

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + DEAA EI+ RSRGTPRIA  LLRRVRDFA+V    +I   IA  +L  L ID+ G D
Sbjct: 203 PIDDEAAMEISRRSRGTPRIANALLRRVRDFAQVKGNGSIDTVIARLSLTALNIDQYGLD 262

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           ++D R L  I   F GGPVG+ TI+  + E    +E++ EPY+I +GFI+RT RGR++  
Sbjct: 263 EIDNRILLTIIDKFQGGPVGVSTIATAIGEDAGTLEEVYEPYLIMEGFIKRTQRGRMVTE 322

Query: 322 IAWQHLGIDI 331
           +A+QHLG +I
Sbjct: 323 LAYQHLGRNI 332


>gi|328955748|ref|YP_004373081.1| Holliday junction DNA helicase subunit RuvB [Coriobacterium
           glomerans PW2]
 gi|328456072|gb|AEB07266.1| Holliday junction DNA helicase subunit RuvB [Coriobacterium
           glomerans PW2]
          Length = 367

 Score =  347 bits (891), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 170/327 (51%), Positives = 237/327 (72%), Gaps = 1/327 (0%)

Query: 5   EGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E LL+ ++S +D ++   LRP+ LE++ GQ     +L++ IEAA+ R E LDHV+F GPP
Sbjct: 30  ERLLTADLSPDDLEVERTLRPQRLEDYCGQSHIKRSLRILIEAARHRGECLDHVMFSGPP 89

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA V+A ELG   ++TSGP I + GDLAA+LTNL+  DVLFIDEIHRL+  VEE
Sbjct: 90  GLGKTTLATVLANELGAQIKTTSGPAIERTGDLAAILTNLQPGDVLFIDEIHRLNRSVEE 149

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LYPAMEDF LD+++G+GP+ARS+++ + RFTL+ ATTR G+LT PL+DRFGI  RL++Y
Sbjct: 150 VLYPAMEDFALDIVIGKGPAARSIRLEIPRFTLVGATTRSGMLTGPLRDRFGISFRLDYY 209

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            I+DL  IV+R A++ G+ +  ++A EIA RSRGTPR+A RLL+RVRD+A+V    +I  
Sbjct: 210 AIDDLAAIVERSARILGVDIDADSAHEIASRSRGTPRLANRLLKRVRDYAQVRGGGSIDL 269

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
            I+  +L    ID++G D +DLR L  +AR F G  VG+ T+++ + E    + D+ EPY
Sbjct: 270 SISQESLTFFEIDELGLDWMDLRILETLARTFRGRAVGLSTLASAVGEDPATLADVYEPY 329

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGID 330
           ++Q G + RTP+GR   P A+ HLG D
Sbjct: 330 LLQCGLMVRTPQGRQATPAAFDHLGCD 356


>gi|258424066|ref|ZP_05686948.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A9635]
 gi|257845687|gb|EEV69719.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A9635]
 gi|302333314|gb|ADL23507.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
           subsp. aureus JKD6159]
          Length = 334

 Score =  347 bits (891), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 168/324 (51%), Positives = 232/324 (71%), Gaps = 1/324 (0%)

Query: 5   EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E ++ +++  E+ D  L LRP  L ++ GQ    SNL+VFI+AAK R E LDHVL  GPP
Sbjct: 3   ERMVDQSMHSEETDFELSLRPTRLRQYIGQNSIKSNLEVFIKAAKLRHEPLDHVLLFGPP 62

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTL+ ++A E+ VN R+ SGP + + GDLAA+L+ L+  DVLFIDEIHRLS +VEE
Sbjct: 63  GLGKTTLSNIIANEMEVNIRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSVVEE 122

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LYPAMEDF LD+++G+G  ARS++I+L  FTL+ ATTR G LT PL+DRFG+ +RL +Y
Sbjct: 123 VLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATTRAGSLTGPLRDRFGVHLRLEYY 182

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
              DLK I+ R A++ G  + DE+A E+A RSRGTPR+A RLL+RVRDF +V   + I  
Sbjct: 183 NESDLKEIIIRTAEVLGTGIDDESAIELAKRSRGTPRVANRLLKRVRDFQQVNEDEQIYI 242

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           E    AL  L +D+ G D +D + +  I + + GGPVG++TI+  + E R  IED+ EP+
Sbjct: 243 ETTKHALGLLQVDQHGLDYIDHKMMNCIIKQYNGGPVGLDTIAVTIGEERITIEDVYEPF 302

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHL 327
           +IQ+GF++RTPRGR   P+A++H 
Sbjct: 303 LIQKGFLERTPRGRKATPLAYEHF 326


>gi|325697228|gb|EGD39114.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           sanguinis SK160]
 gi|328944788|gb|EGG38949.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           sanguinis SK1087]
          Length = 332

 Score =  347 bits (891), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 169/309 (54%), Positives = 226/309 (73%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPR L+E+ GQ +  + LK+FIEAAK R EALDH L  GPPGLGKTT+A V+A ELGVN
Sbjct: 20  LRPRYLQEYIGQDKVKNQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANELGVN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGPVI K+GDL A+L +LE  DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G
Sbjct: 80  LKQTSGPVIEKSGDLVAILNDLEPGDVLFIDEIHRLPMAVEEVLYSAMEDFYIDIMIGSG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            ++RSV ++L  FTLI ATTR G+L+NPL+ RFGI   + +YE  DL  IV+R A++  +
Sbjct: 140 ETSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYEAGDLTEIVERTAEIFEM 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T EAA E+A+RSRGTPRIA RLL+RVRD+A++     I  +I D AL  L +D+ G D
Sbjct: 200 DITHEAAKELALRSRGTPRIANRLLKRVRDYAQIMGNGLIDDKITDQALSMLDVDQEGLD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GF+ RT  GR+   
Sbjct: 260 YVDQKILKTMIEVYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFVMRTRTGRVATR 319

Query: 322 IAWQHLGID 330
            A++HLG +
Sbjct: 320 KAYEHLGYE 328


>gi|227518047|ref|ZP_03948096.1| Holliday junction DNA helicase B [Enterococcus faecalis TX0104]
 gi|256855045|ref|ZP_05560406.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis T8]
 gi|307291532|ref|ZP_07571409.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX0411]
 gi|227074483|gb|EEI12446.1| Holliday junction DNA helicase B [Enterococcus faecalis TX0104]
 gi|256709558|gb|EEU24605.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis T8]
 gi|306497397|gb|EFM66937.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX0411]
 gi|315026741|gb|EFT38673.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX2137]
 gi|315028753|gb|EFT40685.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX4000]
          Length = 338

 Score =  347 bits (891), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 175/331 (52%), Positives = 225/331 (67%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M + E LLS    + +A I   LRP+ L ++ GQ +    L ++IEAAK R EALDH L 
Sbjct: 1   MTEEERLLSAASQEAEASIEKSLRPQFLAQYIGQDKVKQELTIYIEAAKNRNEALDHTLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTT+A V+A E+ VN R+TSGP I +AGDL A+L  LE  DVLFIDEIHRL  
Sbjct: 61  YGPPGLGKTTMAMVIANEMNVNIRTTSGPAIERAGDLVAILNELEPGDVLFIDEIHRLPR 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LY AMEDF +D+MVG+G +A  V   L  FTL+ ATTR G+L+ PL+DRFGI   
Sbjct: 121 VVEEMLYSAMEDFYIDIMVGQGTTAHPVHFPLPPFTLVGATTRAGMLSAPLRDRFGIISH 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           + +Y+ +DLK IV R A +    + +E A EIA RSRGTPRIA RLL+RVRDFA+V    
Sbjct: 181 MEYYQEQDLKEIVLRSADIFQTEIFEEGAFEIARRSRGTPRIANRLLKRVRDFAQVQSDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I R IAD AL  L +D  G D +D + L  +   +GGGPVG+ T+S  + E  + +ED+
Sbjct: 241 KIDRAIADKALTLLQVDHQGLDYVDQKLLKTMIDLYGGGPVGLSTLSVNIGEETETVEDM 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
            EPY+IQ+GFI+RTPRGR+  P A+ H G D
Sbjct: 301 YEPYLIQKGFIKRTPRGRIATPFAYAHFGYD 331


>gi|167755867|ref|ZP_02427994.1| hypothetical protein CLORAM_01384 [Clostridium ramosum DSM 1402]
 gi|237734835|ref|ZP_04565316.1| holliday junction DNA helicase B [Mollicutes bacterium D7]
 gi|167704806|gb|EDS19385.1| hypothetical protein CLORAM_01384 [Clostridium ramosum DSM 1402]
 gi|229382163|gb|EEO32254.1| holliday junction DNA helicase B [Coprobacillus sp. D7]
          Length = 329

 Score =  347 bits (891), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 172/330 (52%), Positives = 233/330 (70%), Gaps = 3/330 (0%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M R  +L  NV  +D   S LRP + +E+ GQ     NLKVF+ AAK R E+LDHVL  G
Sbjct: 1   MTRNEILDANVIDDD---SSLRPSSFDEYVGQTNLKENLKVFVGAAKLRDESLDHVLLYG 57

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTT++ ++A E+G N + T+GP I K GDL A+LT LE  DVLFIDEIHRL+ +V
Sbjct: 58  PPGLGKTTMSMIIANEMGTNIKITTGPSIEKTGDLVAILTALEPGDVLFIDEIHRLNKVV 117

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILYPAMEDF +D+++G+  S RSV+I+L  FTL+ ATTR G L+ PL+DRFGI  +L 
Sbjct: 118 EEILYPAMEDFCVDVVIGKEASTRSVRIDLPPFTLVGATTRAGDLSAPLRDRFGIISKLE 177

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y+  DLKTI+ R +++  + + D+A   +AMRSRGTPRIA RL RRVRDFA+    + I
Sbjct: 178 YYDETDLKTIIDRTSRVYSMPMDDDAKSALAMRSRGTPRIANRLFRRVRDFAQFNGEEII 237

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           ++E    AL RL +D++G D +D +YL  I   F GGPVG+E+++A + E    +ED+ E
Sbjct: 238 SKERTIEALDRLKVDQLGLDDVDHKYLLGIIHRFKGGPVGLESLAASIGEEPQTLEDVYE 297

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           PY++Q G I+RTPRGR+    A++HL I+I
Sbjct: 298 PYLLQIGLIKRTPRGRVATSEAYKHLNINI 327


>gi|225873676|ref|YP_002755135.1| Holliday junction DNA helicase RuvB [Acidobacterium capsulatum ATCC
           51196]
 gi|225793816|gb|ACO33906.1| Holliday junction DNA helicase RuvB [Acidobacterium capsulatum ATCC
           51196]
          Length = 356

 Score =  347 bits (891), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 174/334 (52%), Positives = 237/334 (70%), Gaps = 1/334 (0%)

Query: 2   MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           +D E L+S   + E+    L LRP  L EF GQ +A   L + +EAA++R EALDHVL  
Sbjct: 18  LDTERLISAARADEEDSFELKLRPTHLREFIGQNKAKEQLAIALEAARSRGEALDHVLLF 77

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A EL V F+ TSGP +   GDL A+LTNL ++ VLF+DEIHRL  +
Sbjct: 78  GPPGLGKTTLATIIANELSVGFQQTSGPALQIQGDLTAILTNLREKQVLFLDEIHRLQPV 137

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EE LY A+ED++LD+++G+GP+AR+  +++  FT +AATTR GLL++PL+ RFGI +RL
Sbjct: 138 LEEKLYTALEDYKLDIIIGQGPAARTHVMDIKPFTFVAATTRPGLLSSPLRSRFGILLRL 197

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  +DL+ IVQR A++  + +  + A EIAMRSRGTPRIA RLLRRVRDFA+V     
Sbjct: 198 EFYTDDDLRVIVQRSAEVLHVPIDADGAAEIAMRSRGTPRIANRLLRRVRDFAQVRGTGE 257

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I RE A  AL  L +D  GFD LD R L  I   + GGPVG+ T++A L+E +DA+E++ 
Sbjct: 258 INRETAMQALELLEVDAHGFDDLDRRLLLTIIEKYDGGPVGLNTLAATLAEEQDALEEVY 317

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           EP++IQ GF+ RTPRGR+    A++H G+ +P +
Sbjct: 318 EPFLIQHGFLDRTPRGRVATRAAYEHFGLPLPRK 351


>gi|325689150|gb|EGD31157.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           sanguinis SK115]
          Length = 332

 Score =  347 bits (891), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 169/309 (54%), Positives = 225/309 (72%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L+E+ GQ +    LK+FIEAAK R EALDH L  GPPGLGKTT+A V+A ELGVN
Sbjct: 20  LRPQYLQEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANELGVN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGPVI K+GDL A+L +LE  DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G
Sbjct: 80  LKQTSGPVIEKSGDLVAILNDLEPGDVLFIDEIHRLPMAVEEVLYSAMEDFYIDIMIGSG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            ++RSV ++L  FTLI ATTR G+L+NPL+ RFGI   + +YE  DL  IV+R A++  +
Sbjct: 140 ETSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYEAGDLTEIVERTAEIFEM 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T EAA E+AMRSRGTPRIA RLL+RVRD+A++     I  +I D AL  L +D+ G D
Sbjct: 200 DITHEAAKELAMRSRGTPRIANRLLKRVRDYAQIMSNGLIDDKITDQALSMLDVDQEGLD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GF+ RT  GR+   
Sbjct: 260 YVDQKILKTMIEVYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFVMRTRTGRVATR 319

Query: 322 IAWQHLGID 330
            A++HLG +
Sbjct: 320 KAYEHLGYE 328


>gi|296875469|ref|ZP_06899542.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           parasanguinis ATCC 15912]
 gi|296433536|gb|EFH19310.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           parasanguinis ATCC 15912]
          Length = 332

 Score =  347 bits (891), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 174/317 (54%), Positives = 227/317 (71%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +  E+A    LRP+ L E+ GQ +    LK+FIEAAK R EALDHVL  GPPGLGKTT+A
Sbjct: 10  MGDEEAVERTLRPQYLHEYIGQDKVKDQLKIFIEAAKLRDEALDHVLLFGPPGLGKTTMA 69

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            V+A ELGVN + TSGPVI KAGDL A+L +LE  DVLFIDEIHRL + VEE+LY AMED
Sbjct: 70  FVIANELGVNLKQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMED 129

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F +D+M+G G S+RSV ++L  FTLI ATTR G+L+NPL+ RFGI   + +YE +DL  I
Sbjct: 130 FYIDIMIGAGESSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYEQDDLTEI 189

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           V+R A++  + +T EAA E+++RSRGTPRIA RLL+RVRDFA++     I   I D AL 
Sbjct: 190 VERTAEIFEMEITHEAAEELSLRSRGTPRIANRLLKRVRDFAQIMGDGLIDDSITDKALS 249

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L +D  G D +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GFI 
Sbjct: 250 MLDVDHEGLDYVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIM 309

Query: 312 RTPRGRLLMPIAWQHLG 328
           RT  GR+    A++HLG
Sbjct: 310 RTRTGRVATRKAYEHLG 326


>gi|29374723|ref|NP_813875.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis V583]
 gi|227555749|ref|ZP_03985796.1| Holliday junction DNA helicase B [Enterococcus faecalis HH22]
 gi|229547069|ref|ZP_04435794.1| Holliday junction DNA helicase B [Enterococcus faecalis TX1322]
 gi|229550641|ref|ZP_04439366.1| Holliday junction DNA helicase B [Enterococcus faecalis ATCC 29200]
 gi|257421401|ref|ZP_05598391.1| holliday junction DNA helicase ruvB [Enterococcus faecalis X98]
 gi|293384505|ref|ZP_06630376.1| holliday junction DNA helicase RuvB [Enterococcus faecalis R712]
 gi|293389010|ref|ZP_06633492.1| holliday junction DNA helicase RuvB [Enterococcus faecalis S613]
 gi|294780022|ref|ZP_06745401.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis PC1.1]
 gi|300862207|ref|ZP_07108287.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TUSoD
           Ef11]
 gi|307268983|ref|ZP_07550346.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX4248]
 gi|307274077|ref|ZP_07555286.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX0855]
 gi|307276310|ref|ZP_07557436.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX2134]
 gi|307284122|ref|ZP_07564292.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX0860]
 gi|307287113|ref|ZP_07567186.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX0109]
 gi|312901231|ref|ZP_07760514.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX0470]
 gi|312903816|ref|ZP_07762988.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX0635]
 gi|312908742|ref|ZP_07767682.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis DAPTO
           512]
 gi|312952498|ref|ZP_07771366.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX0102]
 gi|312979205|ref|ZP_07790909.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis DAPTO
           516]
 gi|44888455|sp|Q839T5|RUVB_ENTFA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|29342181|gb|AAO79947.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis V583]
 gi|227175104|gb|EEI56076.1| Holliday junction DNA helicase B [Enterococcus faecalis HH22]
 gi|229304207|gb|EEN70203.1| Holliday junction DNA helicase B [Enterococcus faecalis ATCC 29200]
 gi|229307798|gb|EEN73785.1| Holliday junction DNA helicase B [Enterococcus faecalis TX1322]
 gi|257163225|gb|EEU93185.1| holliday junction DNA helicase ruvB [Enterococcus faecalis X98]
 gi|291078161|gb|EFE15525.1| holliday junction DNA helicase RuvB [Enterococcus faecalis R712]
 gi|291081629|gb|EFE18592.1| holliday junction DNA helicase RuvB [Enterococcus faecalis S613]
 gi|294452916|gb|EFG21339.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis PC1.1]
 gi|295112393|emb|CBL31030.1| Holliday junction DNA helicase, RuvB subunit [Enterococcus sp.
           7L76]
 gi|300848732|gb|EFK76489.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TUSoD
           Ef11]
 gi|306501892|gb|EFM71182.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX0109]
 gi|306503493|gb|EFM72742.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX0860]
 gi|306506975|gb|EFM76119.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX2134]
 gi|306509202|gb|EFM78263.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX0855]
 gi|306514652|gb|EFM83204.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX4248]
 gi|310625341|gb|EFQ08624.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis DAPTO
           512]
 gi|310629594|gb|EFQ12877.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX0102]
 gi|310632760|gb|EFQ16043.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX0635]
 gi|311287970|gb|EFQ66526.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis DAPTO
           516]
 gi|311291608|gb|EFQ70164.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX0470]
 gi|315033493|gb|EFT45425.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX0017]
 gi|315036484|gb|EFT48416.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX0027]
 gi|315143242|gb|EFT87258.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX2141]
 gi|315148994|gb|EFT93010.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX4244]
 gi|315151352|gb|EFT95368.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX0012]
 gi|315153489|gb|EFT97505.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX0031]
 gi|315155060|gb|EFT99076.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX0043]
 gi|315158503|gb|EFU02520.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX0312]
 gi|315165798|gb|EFU09815.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX1302]
 gi|315171309|gb|EFU15326.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX1342]
 gi|315174119|gb|EFU18136.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX1346]
 gi|315573927|gb|EFU86118.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX0309B]
 gi|315579776|gb|EFU91967.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX0630]
 gi|315581879|gb|EFU94070.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX0309A]
 gi|323479299|gb|ADX78738.1| holliday junction DNA helicase RuvB [Enterococcus faecalis 62]
 gi|327533914|gb|AEA92748.1| crossover junction ATP-dependent DNA helicase RuvB [Enterococcus
           faecalis OG1RF]
          Length = 338

 Score =  347 bits (891), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 175/331 (52%), Positives = 225/331 (67%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M + E LLS    + +A I   LRP+ L ++ GQ +    L ++IEAAK R EALDH L 
Sbjct: 1   MTEEERLLSAASQEAEASIEKSLRPQFLAQYIGQDKVKQELTIYIEAAKNRNEALDHTLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTT+A V+A E+ VN R+TSGP I +AGDL A+L  LE  DVLFIDEIHRL  
Sbjct: 61  YGPPGLGKTTMAMVIANEMNVNIRTTSGPAIERAGDLVAILNELEPGDVLFIDEIHRLPR 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LY AMEDF +D+MVG+G +A  V   L  FTL+ ATTR G+L+ PL+DRFGI   
Sbjct: 121 VVEEMLYSAMEDFYIDIMVGQGTTAHPVHFPLPPFTLVGATTRAGMLSAPLRDRFGIISH 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           + +Y+ +DLK IV R A +    + +E A EIA RSRGTPRIA RLL+RVRDFA+V    
Sbjct: 181 MEYYQEQDLKEIVLRSADIFQTEIFEEGAFEIARRSRGTPRIANRLLKRVRDFAQVQSDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I R IAD AL  L +D  G D +D + L  +   +GGGPVG+ T+S  + E  + +ED+
Sbjct: 241 KIDRAIADKALTLLQVDHQGLDYVDQKLLKTMIDLYGGGPVGLSTLSVNIGEETETVEDM 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
            EPY+IQ+GFI+RTPRGR+  P A+ H G D
Sbjct: 301 YEPYLIQKGFIKRTPRGRIATPFAYAHFGYD 331


>gi|288928677|ref|ZP_06422523.1| holliday junction DNA helicase RuvB [Prevotella sp. oral taxon 317
           str. F0108]
 gi|288329661|gb|EFC68246.1| holliday junction DNA helicase RuvB [Prevotella sp. oral taxon 317
           str. F0108]
          Length = 344

 Score =  347 bits (890), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 171/310 (55%), Positives = 227/310 (73%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP   ++F+GQ +   NL+VF+EAAK R E LDH L  GPPGLGKTTL+ ++A ELGV 
Sbjct: 23  LRPPKFQDFSGQSKVVENLEVFVEAAKYRGEPLDHTLLHGPPGLGKTTLSNIIANELGVG 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS +VEE LY AMED+++D+M+ +G
Sbjct: 83  FKITSGPVLDKPGDLAGILTSLEINDVLFIDEIHRLSPVVEEYLYSAMEDYRIDIMIDKG 142

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSARS++I+L+ FTLI ATTR GLLT PL+ RFGI + L +Y+ + L  I++R A++  +
Sbjct: 143 PSARSIQIDLNPFTLIGATTRSGLLTAPLRARFGINLHLEYYDPQTLARIIKRSARILNV 202

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + DEAA EI+ RSRGTPRIA  LLRRVRDFA+V    +I   IA  +L  L ID+ G D
Sbjct: 203 PIDDEAAMEISRRSRGTPRIANALLRRVRDFAQVKGNGSIDTVIARLSLTALNIDQYGLD 262

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           ++D R L  I   F GGPVG+ TI+  + E    +E++ EPY+I +GFI+RT RGR++  
Sbjct: 263 EIDNRILLTIIDKFKGGPVGVSTIATAIGEDAGTLEEVYEPYLIMEGFIKRTQRGRMVTE 322

Query: 322 IAWQHLGIDI 331
           +A+QHLG +I
Sbjct: 323 LAYQHLGRNI 332


>gi|309775421|ref|ZP_07670424.1| holliday junction DNA helicase RuvB [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308916810|gb|EFP62547.1| holliday junction DNA helicase RuvB [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 337

 Score =  347 bits (890), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 172/322 (53%), Positives = 233/322 (72%), Gaps = 1/322 (0%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           N SQ   + + LRP++L E+ GQ +   NL VFIEAAK R EALDHVL  GPPGLGKTTL
Sbjct: 7   NESQSMDEEASLRPQSLREYIGQRQLKENLSVFIEAAKQRNEALDHVLLYGPPGLGKTTL 66

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           + ++A E+G N ++TSGP I K GDLAA+L+ LE  DVLFIDEIHRL   VEEILYPAME
Sbjct: 67  SYILANEMGGNIKTTSGPSIEKGGDLAAILSTLEPGDVLFIDEIHRLPKQVEEILYPAME 126

Query: 131 DFQLDLMVG-EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           D+ +D++VG +  + RS+++ L  FTL+ ATTR G LT PL+DRFGI  +L FYE+++L+
Sbjct: 127 DYCIDIVVGKDSATTRSIRLELPPFTLVGATTRAGDLTAPLRDRFGIVSQLEFYELQELQ 186

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            I+ R +++    + +EA  EIA+RSRGTPRIA RL RRVRDFA V +   I+++IA+ A
Sbjct: 187 QIISRTSRVMDTEIEEEAVLEIALRSRGTPRIANRLFRRVRDFATVMNDGIISKQIAEMA 246

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           L +L +D +G D +D +YL  I   F GGPVG+E +++ + E    +ED+ EPY++Q GF
Sbjct: 247 LDKLKVDHLGLDNVDHKYLKGIIERFRGGPVGLEALASSIGEETMTLEDVYEPYLLQIGF 306

Query: 310 IQRTPRGRLLMPIAWQHLGIDI 331
           I RTPRGR++   A++HLG D+
Sbjct: 307 INRTPRGRVVTEKAYRHLGYDL 328


>gi|262039464|ref|ZP_06012768.1| holliday junction DNA helicase RuvB [Leptotrichia goodfellowii
           F0264]
 gi|261746531|gb|EEY34066.1| holliday junction DNA helicase RuvB [Leptotrichia goodfellowii
           F0264]
          Length = 353

 Score =  347 bits (890), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 167/329 (50%), Positives = 234/329 (71%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M+ E +L+     ED     LRP+T  E+ GQ +    + +FI+AAK R EA+DH+L  G
Sbjct: 1   MENERILASEELGEDNIQKTLRPKTFSEYIGQEDLKEKMNIFIKAAKMRNEAMDHILLYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA V+A E+GVN + T+GPV+ KAGDLAA+LT+LE+ D+LFIDEIHRL+  V
Sbjct: 61  PPGLGKTTLAGVIATEMGVNLKITTGPVLEKAGDLAAILTSLEENDILFIDEIHRLNTSV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILYPAMED +LD+++G+GPSARS++I L +FTLI ATT+ G L+ PL+DRFG+  R+ 
Sbjct: 121 EEILYPAMEDGELDILIGKGPSARSIRIELPKFTLIGATTKAGQLSTPLRDRFGVTHRME 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y++E+LK I++RGA +  ++  ++   EIA RSRGTPRIA RL +R RDFA V     +
Sbjct: 181 YYKLEELKEIIRRGANIFQVSYDEDGITEIAKRSRGTPRIANRLFKRARDFALVEGKGIL 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
            +   D  L  L +D+ G D+LD   L  I   + GGPVGIET+S  L E +  IE++ E
Sbjct: 241 DKASVDGILKLLGVDESGLDELDRNILKSIINVYNGGPVGIETLSLLLGEDKRTIEEVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           PY+++ G+I+RT RGR++    ++HLG++
Sbjct: 301 PYLVKIGYIKRTQRGRVVTEHGYRHLGLE 329


>gi|269118811|ref|YP_003306988.1| Holliday junction DNA helicase RuvB [Sebaldella termitidis ATCC
           33386]
 gi|268612689|gb|ACZ07057.1| Holliday junction DNA helicase RuvB [Sebaldella termitidis ATCC
           33386]
          Length = 339

 Score =  347 bits (890), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 170/330 (51%), Positives = 232/330 (70%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D + +L+     ED     LRPRT  E+ GQ      + +FI AA++R EA+DH+L  
Sbjct: 1   MEDIDRILTDKELSEDNVQKSLRPRTFNEYIGQKLLKEKMSIFIRAAQSRNEAMDHILLY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA V+A E+GVN + T+GPV+ KAGDLAA+LT+LE+ D+LFIDEIHRL+  
Sbjct: 61  GPPGLGKTTLAGVIANEMGVNLKITTGPVLEKAGDLAAILTSLEENDILFIDEIHRLNTS 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILYPAMED +LD+++G+GPSARS++I L +FTLI ATT+ G L+ PL+DRFG+  ++
Sbjct: 121 VEEILYPAMEDGELDILIGKGPSARSIRIELPKFTLIGATTKAGQLSTPLRDRFGVTHKM 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y IE+LK I+ RG  + G+   +    EIAMRSRGTPRIA RLL+R RD+AE+     
Sbjct: 181 EYYNIEELKEILVRGIAILGIKAEENGIEEIAMRSRGTPRIANRLLKRARDYAEIKGTGV 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           + ++     L  L ID+ G D+LD   L  I  N+ GGPVGIET+S  L E +  IE++ 
Sbjct: 241 LNQKSVKGVLDLLGIDEKGLDELDRSILKSIIVNYDGGPVGIETLSLLLGEDKRTIEEVY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           EPY+++ GFI+RT RGR++    + HLG++
Sbjct: 301 EPYLVKIGFIKRTQRGRVVTNRGYVHLGLE 330


>gi|256820535|ref|YP_003141814.1| Holliday junction DNA helicase RuvB [Capnocytophaga ochracea DSM
           7271]
 gi|256582118|gb|ACU93253.1| Holliday junction DNA helicase RuvB [Capnocytophaga ochracea DSM
           7271]
          Length = 355

 Score =  347 bits (890), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 176/325 (54%), Positives = 230/325 (70%), Gaps = 1/325 (0%)

Query: 11  NVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           N S ++ DI   LRP + ++F GQ     NLKVF++AA  R EALDH LF GPPGLGKTT
Sbjct: 25  NYSAQELDIERALRPLSFDDFAGQEAVLENLKVFVKAANMRHEALDHTLFHGPPGLGKTT 84

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           LA ++A ELGV  + TSGPV+ K GDLA LLTNL++RDVLFIDEIHRLS +VEE LY AM
Sbjct: 85  LAHILANELGVGIKITSGPVLDKPGDLAGLLTNLQERDVLFIDEIHRLSPVVEEYLYSAM 144

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           ED+++D+M+  GP+AR+V+INL+ FTLI ATTR GLLT P++ RFGI  RL +Y  E L 
Sbjct: 145 EDYKIDIMIESGPNARTVQINLNPFTLIGATTRSGLLTAPMRARFGIQSRLQYYSTELLA 204

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            IV+R A +  + ++ EAA E+A RSRGTPRIA  LLRR+RDFA++     I   I    
Sbjct: 205 DIVRRSASILKVPISMEAAIELASRSRGTPRIANALLRRIRDFAQIKGNGEINIAITRFG 264

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           L  L +D  G D++D + L+ +   F GGPVGI T++  +SE  + IE++ EP++IQ+GF
Sbjct: 265 LKALNVDAHGLDEMDNKILSTLIDKFKGGPVGITTLATAVSESAETIEEVYEPFLIQEGF 324

Query: 310 IQRTPRGRLLMPIAWQHLGIDIPHR 334
           I RTPRGR +  +A++HLG   P R
Sbjct: 325 IVRTPRGREVTDLAYKHLGRVNPAR 349


>gi|227499580|ref|ZP_03929687.1| crossover junction endoribonuclease subunit B [Anaerococcus
           tetradius ATCC 35098]
 gi|227218339|gb|EEI83593.1| crossover junction endoribonuclease subunit B [Anaerococcus
           tetradius ATCC 35098]
          Length = 335

 Score =  347 bits (890), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 169/310 (54%), Positives = 226/310 (72%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L+++ GQ +    L +FI+++ +R E LDHVL  GPPGLGKTTL+ ++A ELGVN
Sbjct: 24  IRPKWLKDYIGQDKVKEKLDIFIKSSLSRNEPLDHVLLQGPPGLGKTTLSTIIANELGVN 83

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGP I +  DLA++LTNL D DVLFIDEIHR++  VEEILY AMEDF LD++VG+G
Sbjct: 84  LRVTSGPAIERPSDLASILTNLSDGDVLFIDEIHRINRSVEEILYSAMEDFVLDIIVGKG 143

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+A+S++I+L RFTLI ATTR G+L+ PL+DRFG+ + LN Y+ +DL TIV+R A++ G+
Sbjct: 144 PNAQSIRIDLDRFTLIGATTRAGMLSAPLRDRFGVLLALNLYDTKDLTTIVKRSAQILGI 203

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
           A+ ++ A EIA RSRGTPRIA RLL+RVRDFA V     I  E +   L  L ID MG D
Sbjct: 204 AIDEKGAVEIARRSRGTPRIANRLLKRVRDFAIVRANDQIDYETSKKGLELLEIDPMGLD 263

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + +  +  NF GGPVG++TI+A        IED+ EPY++Q GFI RTPRGR+L  
Sbjct: 264 TMDKKIIMTMYDNFAGGPVGVDTIAASTGIENVTIEDVYEPYLLQIGFISRTPRGRVLTR 323

Query: 322 IAWQHLGIDI 331
            A++H G+ I
Sbjct: 324 KAYEHYGLKI 333


>gi|262068258|ref|ZP_06027870.1| holliday junction DNA helicase RuvB [Fusobacterium periodonticum
           ATCC 33693]
 gi|291377996|gb|EFE85514.1| holliday junction DNA helicase RuvB [Fusobacterium periodonticum
           ATCC 33693]
          Length = 338

 Score =  347 bits (890), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 163/309 (52%), Positives = 225/309 (72%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP++ +E+ GQ      + + I+AA+ R   +DH+L  GPPGLGKTTLA V+A E+  N
Sbjct: 20  LRPKSFDEYIGQENLKEKMNISIKAAQKRNMTVDHILLYGPPGLGKTTLAGVIANEMQAN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGP++ KAGDLAA+LT+LE+ D+LFIDEIHRL+  VEEILYPAMED +LD+++G+G
Sbjct: 80  LKITSGPILEKAGDLAAILTSLEENDILFIDEIHRLNNTVEEILYPAMEDGELDIIIGKG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSA+S++I L  FTLI ATTR GLL+ PL+DRFG+  ++ +Y I+++K I+ RGAK+ G+
Sbjct: 140 PSAKSIRIELPAFTLIGATTRAGLLSAPLRDRFGVSHKMEYYNIDEIKAIIIRGAKILGV 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            ++DE A EI+ RSRGTPRIA RLL+RVRD+ E+    TI    A  AL  L +D  G D
Sbjct: 200 KISDEGAIEISKRSRGTPRIANRLLKRVRDYCEIKGNGTIDMMSAKNALDMLGVDSSGLD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           +LD   +  I  N+ GGPVGIET+S  L E R  +E++ EPY+++ GF++RT RGR++ P
Sbjct: 260 ELDRNIINSIIENYDGGPVGIETLSLLLGEDRRTLEEVYEPYLVKIGFLKRTNRGRVVTP 319

Query: 322 IAWQHLGID 330
            A+QH   D
Sbjct: 320 KAYQHFKKD 328


>gi|224536855|ref|ZP_03677394.1| hypothetical protein BACCELL_01731 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521521|gb|EEF90626.1| hypothetical protein BACCELL_01731 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 343

 Score =  347 bits (889), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 173/322 (53%), Positives = 235/322 (72%), Gaps = 4/322 (1%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L SR    E+A    LRP + E+F+GQ +   NL++F++AA+ R EALDHVL  GPPGLG
Sbjct: 13  LTSRERDFENA----LRPLSFEDFSGQDKVVDNLRIFVKAARLRGEALDHVLLHGPPGLG 68

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTTL+ ++A ELGV F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS +VEE LY
Sbjct: 69  KTTLSNIIANELGVGFKVTSGPVLDKPGDLAGVLTSLEPNDVLFIDEIHRLSPVVEEYLY 128

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            AMED+++D+M+ +GPSARS++I+L+ FT++ ATTR GLLT PL+ RFGI + L +Y+ +
Sbjct: 129 SAMEDYRIDIMIDKGPSARSIQIDLNPFTMVGATTRSGLLTAPLRARFGINLHLEYYDDD 188

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
            L  I++R A +  +  +  AA EIA RSRGTPRIA  LLRRVRDFA+V  + +I  EIA
Sbjct: 189 VLSGIIRRSAGILNVPCSTRAASEIASRSRGTPRIANALLRRVRDFAQVKGSGSIDTEIA 248

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           + AL  L IDK G D++D + L  I   F GGPVG+ TI+  L E    +E++ EP++I+
Sbjct: 249 NFALEALNIDKYGLDEIDNKILCTIIDKFKGGPVGLTTIATALGEDAGTLEEVYEPFLIK 308

Query: 307 QGFIQRTPRGRLLMPIAWQHLG 328
           +GF++RTPRGR +  +A++HLG
Sbjct: 309 EGFLKRTPRGREVTELAYKHLG 330


>gi|313204404|ref|YP_004043061.1| holliday junction DNA helicase subunit ruvb [Paludibacter
           propionicigenes WB4]
 gi|312443720|gb|ADQ80076.1| Holliday junction DNA helicase subunit RuvB [Paludibacter
           propionicigenes WB4]
          Length = 338

 Score =  347 bits (889), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 171/307 (55%), Positives = 225/307 (73%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP T  +F+GQ +   NLK+F++AA+ R E+LDHVL  GPPGLGKTTL+ ++A EL V 
Sbjct: 21  LRPLTFSDFSGQNKIVENLKIFVQAARMRTESLDHVLLHGPPGLGKTTLSNIIANELNVG 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           F+ TSGPV+ K GDLA LLT+LE  DVLFIDEIHRLS IVEE LY AMED+++D+M+ +G
Sbjct: 81  FKITSGPVLDKPGDLAGLLTSLEVNDVLFIDEIHRLSPIVEEYLYSAMEDYRIDIMIDKG 140

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSARS+++ L+ FTLI ATTR GLLT PL+ RFGI     +Y+IE +  I++R ++L  +
Sbjct: 141 PSARSIQLELNPFTLIGATTRSGLLTAPLRARFGINCHFEYYDIEVITEIIKRSSRLLNV 200

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  +AA EIA RSRGTPRIA  LLRRVRDFA+V    +I  EIA  AL  L IDK G D
Sbjct: 201 EIGHKAAVEIAGRSRGTPRIANALLRRVRDFAQVKGNGSIDVEIACYALEALNIDKYGLD 260

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           ++D + L  I   F GGPVG+ TI+  L E    IE++ EP++I++GF++RTPRGR +  
Sbjct: 261 EIDNKILNTIIDKFSGGPVGLTTIATALGEDAGTIEEVYEPFLIKEGFMKRTPRGREVTE 320

Query: 322 IAWQHLG 328
           +A++HLG
Sbjct: 321 LAYKHLG 327


>gi|94984512|ref|YP_603876.1| Holliday junction DNA helicase B [Deinococcus geothermalis DSM
           11300]
 gi|123079970|sp|Q1J1C7|RUVB_DEIGD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|94554793|gb|ABF44707.1| Holliday junction DNA helicase RuvB [Deinococcus geothermalis DSM
           11300]
          Length = 331

 Score =  347 bits (889), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 174/311 (55%), Positives = 226/311 (72%), Gaps = 1/311 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP++L E+ GQ      L V+++AAK R EALDH L  GPPGLGKTTLA ++A ELGVN
Sbjct: 9   LRPKSLAEYVGQARLKEKLGVYLQAAKGRKEALDHTLLFGPPGLGKTTLAHIIAAELGVN 68

Query: 82  FRSTSGPVIAKAGDLAALLTN-LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
            R TSGP I K GDLAA+LTN LE+ DVLFIDEIHRL  + EE LYPAMEDF+LD+++G+
Sbjct: 69  IRVTSGPAIEKPGDLAAILTNSLEEGDVLFIDEIHRLGRVAEEHLYPAMEDFKLDIVLGQ 128

Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
           GP+AR++++ L RFTL+ ATTR GL+T P++ RFGI   L +Y  E++ T + R A+L G
Sbjct: 129 GPAARTIELPLPRFTLVGATTRPGLITAPMRSRFGIIEHLEYYTPEEIGTNLLRDARLLG 188

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGF 260
             +T+EAA EI  RSRGT RIA RLLRRVRD+A+VA  KTI  E A  AL +L +D  G 
Sbjct: 189 FGLTEEAAIEIGARSRGTMRIAKRLLRRVRDYADVAGEKTIELERAQDALDKLGLDTAGL 248

Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320
           D+ D +YL  +   F GGPVG++T++  +SE    +ED+ EPY+IQ GFI+RTPRGR+  
Sbjct: 249 DERDKKYLETLIHRFAGGPVGVDTLATAISEDALTLEDVYEPYLIQLGFIKRTPRGRVAT 308

Query: 321 PIAWQHLGIDI 331
             A+ HLG+ +
Sbjct: 309 AHAYDHLGLPV 319


>gi|152993673|ref|YP_001359394.1| Holliday junction DNA helicase RuvB [Sulfurovum sp. NBC37-1]
 gi|166231562|sp|A6QC28|RUVB_SULNB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|151425534|dbj|BAF73037.1| holliday junction DNA helicase RuvB [Sulfurovum sp. NBC37-1]
          Length = 337

 Score =  347 bits (889), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 171/310 (55%), Positives = 229/310 (73%), Gaps = 5/310 (1%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP + +E+ GQ +   NLKVFIEA+K R EALDH+LF GPPGLGKTTLA ++A E+  N
Sbjct: 20  LRPSSWDEYIGQEKIKKNLKVFIEASKRREEALDHILFFGPPGLGKTTLANIIASEMHTN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            ++T+ P+I KAGDLAALLTN+E+ D+LFIDEIHR+S  +EEILYPAMEDF+LD+++G G
Sbjct: 80  IKTTAAPMIEKAGDLAALLTNIEEGDILFIDEIHRMSPAIEEILYPAMEDFRLDIIIGSG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+A++VKI+L RFTLI ATTR G+L+NPL++RFG+  R+ FY  E+L  IV + +     
Sbjct: 140 PAAQTVKIDLPRFTLIGATTRAGMLSNPLRERFGMHFRMQFYTPEELAKIVSQASHKLEK 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
               EAA EIA RSRGTPRIA RLL+RVRDF+EVA+   +T E A  AL  L ++ +GFD
Sbjct: 200 PSKAEAAHEIARRSRGTPRIALRLLKRVRDFSEVANENEVTLERARYALDELGVNDLGFD 259

Query: 262 QLDLRYLTMI--ARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLL 319
           + D+R L ++  A+N    P+G+ TI A LSE    IED++EPY+I  G+I+RT RGR+ 
Sbjct: 260 EQDIRLLELLVSAKN---KPMGLSTIGAALSEDEGTIEDVLEPYLIANGYIERTARGRIA 316

Query: 320 MPIAWQHLGI 329
            P  ++H  +
Sbjct: 317 TPKCYEHFKL 326


>gi|330683934|gb|EGG95701.1| Holliday junction DNA helicase RuvB [Staphylococcus epidermidis
           VCU121]
          Length = 334

 Score =  347 bits (889), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 168/325 (51%), Positives = 230/325 (70%), Gaps = 1/325 (0%)

Query: 5   EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E ++ ++   E++D  L LRP  L+++ GQ    SNL+VFI+AAK R E LDHVL  GPP
Sbjct: 3   ERMVDQSAHNEESDFELSLRPTKLKQYIGQSSIKSNLEVFIKAAKLREEPLDHVLLYGPP 62

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTL+ ++A E+ VN R+ SGP + + GDLAA+L+ L+  DVLFIDEIHRLS +VEE
Sbjct: 63  GLGKTTLSNIIANEMDVNIRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSVVEE 122

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LYPAMEDF LD+++G+G  ARS++I+L  FTL+ ATTR G LT PL+DRFG+ +RL +Y
Sbjct: 123 VLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATTRAGSLTGPLRDRFGVHLRLEYY 182

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
              DLK I+ R A++ G  + +E+A E+A RSRGTPR+A RLL+RVRDF +V     I  
Sbjct: 183 NEADLKEIIIRTAEVLGTGIDEESAIELAKRSRGTPRVANRLLKRVRDFQQVNEDDQIYI 242

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           E    AL  L +D  G D +D + +  I   + GGPVG++TI+  + E R  IED+ EP+
Sbjct: 243 ETTKRALKLLQVDDYGLDYIDHKMMNCILNQYKGGPVGLDTIAVSIGEERVTIEDVYEPF 302

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLG 328
           +IQ+GF++RTPRGR   P+A +H G
Sbjct: 303 LIQKGFLERTPRGRKATPLAHEHFG 327


>gi|329769668|ref|ZP_08261072.1| Holliday junction ATP-dependent DNA helicase ruvB [Gemella
           sanguinis M325]
 gi|328838423|gb|EGF88032.1| Holliday junction ATP-dependent DNA helicase ruvB [Gemella
           sanguinis M325]
          Length = 333

 Score =  347 bits (889), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 171/328 (52%), Positives = 230/328 (70%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD   + +     E+ +   LRP+ L ++ GQ +  +NLKVFIEAAK R+E LDH L  G
Sbjct: 1   MDERMVSANQNDGEEREEQSLRPKLLSQYIGQEQIKNNLKVFIEAAKIRSEVLDHCLLYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+ V  + TSGP I K+GDLAA+LT+LE  DVLFIDEIHR+S  +
Sbjct: 61  PPGLGKTTLATIIANEMEVGIKYTSGPAIEKSGDLAAILTSLEPGDVLFIDEIHRISRSI 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILY AMEDF LD+++G+G  +RS++I L  FTL+ ATTR G LT PL+DRFG+  RL 
Sbjct: 121 EEILYSAMEDFYLDIVIGKGDESRSIRIELPPFTLVGATTRAGALTAPLRDRFGVHCRLE 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY I +L+ I+ R A + G  +  E++ EIAMRSRGTPRIA RLL+RVRDFA+V +   I
Sbjct: 181 FYNIGELQNIINRTADIFGCEIDTESSYEIAMRSRGTPRIANRLLKRVRDFAQVKNNGII 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T+ +A  +L  L +D  G D +D + L  + + + G  VG+ETI+  + E    IED+ E
Sbjct: 241 TQSLAKDSLDLLQVDSKGLDNIDYKILECLIKRYDGRAVGLETIAITIGEESITIEDVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           PY++++GFI+RTPRGR   P A+QHLG+
Sbjct: 301 PYLVKEGFIERTPRGRRATPKAYQHLGL 328


>gi|315168285|gb|EFU12302.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX1341]
          Length = 338

 Score =  347 bits (889), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 175/331 (52%), Positives = 225/331 (67%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M + E LLS    + +A I   LRP+ L ++ GQ +    L ++IEAAK R EALDH L 
Sbjct: 1   MTEEERLLSAASQEAEASIEKSLRPQFLAQYIGQDKVKQELTIYIEAAKNRNEALDHTLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTT+A V+A E+ VN R+TSGP I +AGDL A+L  LE  DVLFIDEIHRL  
Sbjct: 61  YGPPGLGKTTMAMVIANEMNVNIRTTSGPAIERAGDLVAILNELEPGDVLFIDEIHRLPR 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LY AMEDF +D+MVG+G +A  V   L  FTL+ ATTR G+L+ PL+DRFGI   
Sbjct: 121 VVEEMLYSAMEDFYIDIMVGQGTTAHPVHFPLPPFTLVGATTRAGMLSAPLRDRFGIISH 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           + +Y+ +DLK IV R A +    + +E A EIA RSRGTPRIA RLL+RVRDFA+V    
Sbjct: 181 MEYYQEQDLKEIVLRSADIFQTEIFEEGAFEIARRSRGTPRIANRLLKRVRDFAQVQSDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I R IAD AL  L +D  G D +D + L  +   +GGGPVG+ T+S  + E  + +ED+
Sbjct: 241 KIDRVIADKALTLLQVDHQGLDYVDQKLLKTMIDLYGGGPVGLSTLSVNIGEETETVEDM 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
            EPY+IQ+GFI+RTPRGR+  P A+ H G D
Sbjct: 301 YEPYLIQKGFIKRTPRGRIATPFAYAHFGYD 331


>gi|298373909|ref|ZP_06983867.1| holliday junction DNA helicase RuvB [Bacteroides sp. 3_1_19]
 gi|298268277|gb|EFI09932.1| holliday junction DNA helicase RuvB [Bacteroides sp. 3_1_19]
          Length = 345

 Score =  347 bits (889), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 174/309 (56%), Positives = 227/309 (73%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           ++LRP +L +F+GQ +   NLKVF+ AA+ R EALDHVL  GPPGLGKTTL+ ++A ELG
Sbjct: 25  NVLRPLSLRDFSGQAKVVENLKVFVMAARMRKEALDHVLLHGPPGLGKTTLSNIIANELG 84

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
           V F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS IVEE LY AMED+++D+++ 
Sbjct: 85  VGFKVTSGPVLDKPGDLAGVLTSLEKNDVLFIDEIHRLSPIVEEYLYSAMEDYRIDIVID 144

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199
           +GPSARS++I+L+ FTLI ATTR GLLT+PL+ RFGI + L +Y++E L  IV R A + 
Sbjct: 145 KGPSARSIQIDLAPFTLIGATTRSGLLTSPLRARFGINMHLEYYDMETLTKIVLRSANIL 204

Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259
            +     AA EIA RSRGTPRIA  LLRRVRDFA+V     I + IA  +L  L ID+ G
Sbjct: 205 NVKCELNAAREIASRSRGTPRIANALLRRVRDFAQVKGNGDIDKAIACFSLEALNIDRYG 264

Query: 260 FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLL 319
            DQ+D + LT I   F GGPVG+ TI+  L E    +E++ EP++I++GFI+RTPRGR +
Sbjct: 265 LDQIDNKLLTTIIDKFKGGPVGLTTIATALGEDPGTLEEVYEPFLIKEGFIKRTPRGREV 324

Query: 320 MPIAWQHLG 328
             +A+ HLG
Sbjct: 325 TDLAYTHLG 333


>gi|322390585|ref|ZP_08064100.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           parasanguinis ATCC 903]
 gi|321142664|gb|EFX38127.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           parasanguinis ATCC 903]
          Length = 345

 Score =  346 bits (888), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 174/317 (54%), Positives = 227/317 (71%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +  E+A    LRP+ L E+ GQ +    LK+FIEAAK R EALDHVL  GPPGLGKTT+A
Sbjct: 23  MGDEEAVERTLRPQYLHEYIGQDKVKDQLKIFIEAAKLRDEALDHVLLFGPPGLGKTTMA 82

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            V+A ELGVN + TSGPVI KAGDL A+L +LE  DVLFIDEIHRL + VEE+LY AMED
Sbjct: 83  FVIANELGVNLKQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMED 142

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F +D+M+G G S+RSV ++L  FTLI ATTR G+L+NPL+ RFGI   + +YE +DL  I
Sbjct: 143 FYIDIMIGAGESSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYEQDDLTEI 202

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           V+R A++  + +T EAA E+++RSRGTPRIA RLL+RVRDFA++     I   I D AL 
Sbjct: 203 VERTAEIFEMEITHEAAEELSLRSRGTPRIANRLLKRVRDFAQIMGDGLIDDTITDKALS 262

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L +D  G D +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GFI 
Sbjct: 263 MLDVDHEGLDYVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIM 322

Query: 312 RTPRGRLLMPIAWQHLG 328
           RT  GR+    A++HLG
Sbjct: 323 RTRTGRVATRKAYEHLG 339


>gi|227539702|ref|ZP_03969751.1| crossover junction endodeoxyribonuclease [Sphingobacterium
           spiritivorum ATCC 33300]
 gi|300773845|ref|ZP_07083714.1| crossover junction ATP-dependent DNA helicase RuvB
           [Sphingobacterium spiritivorum ATCC 33861]
 gi|227240344|gb|EEI90359.1| crossover junction endodeoxyribonuclease [Sphingobacterium
           spiritivorum ATCC 33300]
 gi|300760016|gb|EFK56843.1| crossover junction ATP-dependent DNA helicase RuvB
           [Sphingobacterium spiritivorum ATCC 33861]
          Length = 340

 Score =  346 bits (888), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 173/308 (56%), Positives = 224/308 (72%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           +LRP+T E+FTGQ +   NL +F+ AAK R EALDHVL  GPPGLGKTTL+ ++A E+GV
Sbjct: 22  VLRPQTFEDFTGQEKILENLSIFVRAAKLRGEALDHVLLHGPPGLGKTTLSNIIANEMGV 81

Query: 81  NFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
             + TSGPV+ K GDLA LLTNLE+ D+LFIDEIHRLS +VEE LY AMEDF++D+M+  
Sbjct: 82  GIKITSGPVLDKPGDLAGLLTNLEEGDILFIDEIHRLSPLVEEYLYSAMEDFKIDIMLET 141

Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
           GP+ARSV+I+L+ FTL+ ATTR GLLT PL+ RFGI  RL +Y+ + L TIV R A +  
Sbjct: 142 GPNARSVQISLNPFTLVGATTRSGLLTAPLRARFGINSRLQYYDAKLLTTIVLRSATILN 201

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGF 260
             ++DE A EIA RSRGTPRIA  LLRR RDFA++    +I R IA  AL  L +D+ G 
Sbjct: 202 TPISDEGAYEIARRSRGTPRIANALLRRTRDFAQIKGNGSIDRAIAQYALNALNVDENGL 261

Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320
           D++D R LT I   F GGPVG++TI+  + E    IE++ EP++IQ+G++ RT RGR   
Sbjct: 262 DEMDNRILTTIIDKFKGGPVGLKTIATAVGEDEGTIEEVYEPFLIQEGYLMRTSRGRECT 321

Query: 321 PIAWQHLG 328
             A++HLG
Sbjct: 322 EAAFKHLG 329


>gi|332365355|gb|EGJ43118.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           sanguinis SK1059]
          Length = 332

 Score =  346 bits (888), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 168/309 (54%), Positives = 226/309 (73%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L+E+ GQ +    LK+FIEAAK R EALDH L  GPPGLGKTT+A V+A ELGVN
Sbjct: 20  LRPQYLQEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANELGVN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGPVI K+GDL A+L +LE  DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G
Sbjct: 80  LKQTSGPVIEKSGDLVAILNDLEPGDVLFIDEIHRLPMAVEEVLYSAMEDFYIDIMIGSG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            ++RSV ++L  FTLI ATTR G+L+NPL+ RFGI   + +YE +DL  IV+R A++  +
Sbjct: 140 ETSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYEADDLTEIVERTAEIFEM 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T EAA E+A+RSRGTPRIA RLL+RVRD+A++     I  +I D AL  L +D+ G D
Sbjct: 200 DITHEAAKELALRSRGTPRIANRLLKRVRDYAQIMGNGLIDDKITDQALSMLDVDQEGLD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GF+ RT  GR+   
Sbjct: 260 YVDQKILRTMIEVYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFVMRTRTGRVATR 319

Query: 322 IAWQHLGID 330
            A++HLG +
Sbjct: 320 KAYEHLGYE 328


>gi|301311707|ref|ZP_07217632.1| holliday junction DNA helicase RuvB [Bacteroides sp. 20_3]
 gi|300830267|gb|EFK60912.1| holliday junction DNA helicase RuvB [Bacteroides sp. 20_3]
          Length = 341

 Score =  346 bits (888), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 174/309 (56%), Positives = 227/309 (73%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           ++LRP +L +F+GQ +   NLKVF+ AA+ R EALDHVL  GPPGLGKTTL+ ++A ELG
Sbjct: 21  NVLRPLSLRDFSGQAKVVENLKVFVMAARMRKEALDHVLLHGPPGLGKTTLSNIIANELG 80

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
           V F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS IVEE LY AMED+++D+++ 
Sbjct: 81  VGFKVTSGPVLDKPGDLAGVLTSLEKNDVLFIDEIHRLSPIVEEYLYSAMEDYRIDIVID 140

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199
           +GPSARS++I+L+ FTLI ATTR GLLT+PL+ RFGI + L +Y++E L  IV R A + 
Sbjct: 141 KGPSARSIQIDLAPFTLIGATTRSGLLTSPLRARFGINMHLEYYDMETLTKIVLRSANIL 200

Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259
            +     AA EIA RSRGTPRIA  LLRRVRDFA+V     I + IA  +L  L ID+ G
Sbjct: 201 NVKCELNAAREIASRSRGTPRIANALLRRVRDFAQVKGNGDIDKAIACFSLEALNIDRYG 260

Query: 260 FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLL 319
            DQ+D + LT I   F GGPVG+ TI+  L E    +E++ EP++I++GFI+RTPRGR +
Sbjct: 261 LDQIDNKLLTTIIDKFQGGPVGLTTIATALGEDPGTLEEVYEPFLIKEGFIKRTPRGREV 320

Query: 320 MPIAWQHLG 328
             +A+ HLG
Sbjct: 321 TDLAYTHLG 329


>gi|329956350|ref|ZP_08296947.1| Holliday junction DNA helicase RuvB [Bacteroides clarus YIT 12056]
 gi|328524247|gb|EGF51317.1| Holliday junction DNA helicase RuvB [Bacteroides clarus YIT 12056]
          Length = 344

 Score =  346 bits (888), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 170/307 (55%), Positives = 228/307 (74%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP   E+F+GQ +   NL++F++AA+ R EALDHVL  GPPGLGKTTL+ ++A ELGV 
Sbjct: 24  LRPLNFEDFSGQDKVVDNLRIFVKAARLRGEALDHVLLHGPPGLGKTTLSNIIANELGVG 83

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS +VEE LY AMED+++D+M+ +G
Sbjct: 84  FKITSGPVLDKPGDLAGVLTSLEPNDVLFIDEIHRLSPVVEEYLYSAMEDYRIDIMIDKG 143

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSARS++I+L+ FTL+ ATTR GLLT PL+ RFGI + L +Y+ + L  I++R A +  +
Sbjct: 144 PSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGINLHLEYYDDDVLGGIIRRSANILDV 203

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
             +  AA EIA RSRGTPRIA  LLRRVRDFA+V  + +I  EIA+ AL  L IDK G D
Sbjct: 204 PCSTRAASEIAGRSRGTPRIANALLRRVRDFAQVKGSGSIDTEIANFALEALNIDKYGLD 263

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           ++D + L  I   F GGPVG+ TI+  L E    IE++ EP++I++GF++RTPRGR +  
Sbjct: 264 EIDNKILCTIIDKFKGGPVGLTTIATALGEDAGTIEEVYEPFLIKEGFLKRTPRGREVTE 323

Query: 322 IAWQHLG 328
           +A++HLG
Sbjct: 324 LAYKHLG 330


>gi|218131744|ref|ZP_03460548.1| hypothetical protein BACEGG_03365 [Bacteroides eggerthii DSM 20697]
 gi|317474640|ref|ZP_07933914.1| Holliday junction DNA helicase RuvB [Bacteroides eggerthii
           1_2_48FAA]
 gi|217986047|gb|EEC52386.1| hypothetical protein BACEGG_03365 [Bacteroides eggerthii DSM 20697]
 gi|316909321|gb|EFV31001.1| Holliday junction DNA helicase RuvB [Bacteroides eggerthii
           1_2_48FAA]
          Length = 343

 Score =  346 bits (888), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 169/307 (55%), Positives = 229/307 (74%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP   E+F+GQ +   NL++F++AA+ R EALDHVL  GPPGLGKTTL+ ++A ELGV 
Sbjct: 24  LRPLNFEDFSGQDKVVDNLRIFVKAARLRGEALDHVLLHGPPGLGKTTLSNIIANELGVG 83

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS +VEE LY AMED+++D+M+ +G
Sbjct: 84  FKITSGPVLDKPGDLAGVLTSLEPNDVLFIDEIHRLSPVVEEYLYSAMEDYRIDIMIDKG 143

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSARS++I+L+ FTL+ ATTR GLLT PL+ RFGI + L +Y+ + L  I++R A +  +
Sbjct: 144 PSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGINLHLEYYDDDVLSGIIRRSASILDV 203

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
             + +AA EIA RSRGTPRIA  LLRRVRDFA+V  + +I  +IA+ AL  L IDK G D
Sbjct: 204 PCSTKAASEIAGRSRGTPRIANALLRRVRDFAQVKGSGSIDTQIANFALEALNIDKYGLD 263

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           ++D + L  I   F GGPVG+ TI+  L E    IE++ EP++I++GF++RTPRGR +  
Sbjct: 264 EIDNKILCTIIDKFKGGPVGLTTIATALGEDAGTIEEVYEPFLIKEGFLKRTPRGREVTE 323

Query: 322 IAWQHLG 328
           +A++HLG
Sbjct: 324 LAYKHLG 330


>gi|256618466|ref|ZP_05475312.1| holliday junction DNA helicase RuvB [Enterococcus faecalis ATCC
           4200]
 gi|256597993|gb|EEU17169.1| holliday junction DNA helicase RuvB [Enterococcus faecalis ATCC
           4200]
          Length = 338

 Score =  346 bits (888), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 174/331 (52%), Positives = 224/331 (67%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M + E  LS    + +A I   LRP+ L ++ GQ +    L ++IEAAK R EALDH L 
Sbjct: 1   MTEEERFLSAASQEAEASIEKSLRPQFLAQYIGQDKVKQELTIYIEAAKNRNEALDHTLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTT+A V+A E+ VN R+TSGP I +AGDL A+L  LE  DVLFIDEIHRL  
Sbjct: 61  YGPPGLGKTTMAMVIANEMNVNIRTTSGPAIERAGDLVAILNELEPGDVLFIDEIHRLPR 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LY AMEDF +D+MVG+G +A  V   L  FTL+ ATTR G+L+ PL+DRFGI   
Sbjct: 121 VVEEMLYSAMEDFYIDIMVGQGTTAHPVHFPLPPFTLVGATTRAGMLSAPLRDRFGIISH 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           + +Y+ +DLK IV R A +    + +E A EIA RSRGTPRIA RLL+RVRDFA+V    
Sbjct: 181 MEYYQEQDLKKIVLRSADIFQTEIFEEGAFEIARRSRGTPRIANRLLKRVRDFAQVQSDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I R IAD AL  L +D  G D +D + L  +   +GGGPVG+ T+S  + E  + +ED+
Sbjct: 241 KIDRAIADKALTLLQVDHQGLDYVDQKLLKTMIDLYGGGPVGLSTLSVNIGEETETVEDM 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
            EPY+IQ+GFI+RTPRGR+  P A+ H G D
Sbjct: 301 YEPYLIQKGFIKRTPRGRIATPFAYAHFGYD 331


>gi|262383193|ref|ZP_06076330.1| Holliday junction DNA helicase RuvB [Bacteroides sp. 2_1_33B]
 gi|262296071|gb|EEY84002.1| Holliday junction DNA helicase RuvB [Bacteroides sp. 2_1_33B]
          Length = 345

 Score =  346 bits (888), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 174/309 (56%), Positives = 227/309 (73%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           ++LRP +L +F+GQ +   NLKVF+ AA+ R EALDHVL  GPPGLGKTTL+ ++A ELG
Sbjct: 25  NVLRPLSLRDFSGQAKVVENLKVFVMAARMRKEALDHVLLHGPPGLGKTTLSNIIANELG 84

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
           V F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS IVEE LY AMED+++D+++ 
Sbjct: 85  VGFKVTSGPVLDKPGDLAGVLTSLEKNDVLFIDEIHRLSPIVEEYLYSAMEDYRIDIVID 144

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199
           +GPSARS++I+L+ FTLI ATTR GLLT+PL+ RFGI + L +Y++E L  IV R A + 
Sbjct: 145 KGPSARSIQIDLAPFTLIGATTRSGLLTSPLRARFGINMHLEYYDMETLTKIVLRSANIL 204

Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259
            +     AA EIA RSRGTPRIA  LLRRVRDFA+V     I + IA  +L  L ID+ G
Sbjct: 205 NVKCELNAAREIASRSRGTPRIANALLRRVRDFAQVKGNGDIDKAIACFSLEALNIDRYG 264

Query: 260 FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLL 319
            DQ+D + LT I   F GGPVG+ TI+  L E    +E++ EP++I++GFI+RTPRGR +
Sbjct: 265 LDQIDNKLLTTIIDKFQGGPVGLTTIATALGEDPGTLEEVYEPFLIKEGFIKRTPRGREV 324

Query: 320 MPIAWQHLG 328
             +A+ HLG
Sbjct: 325 TDLAYTHLG 333


>gi|319945933|ref|ZP_08020183.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           australis ATCC 700641]
 gi|319747998|gb|EFW00242.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           australis ATCC 700641]
          Length = 354

 Score =  346 bits (888), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 173/317 (54%), Positives = 227/317 (71%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +  E+A    LRP+ L E+ GQ +    LK+FIEAAK R EALDHVL  GPPGLGKTT+A
Sbjct: 32  MGDEEAVERTLRPQYLHEYIGQDKVKDQLKIFIEAAKLRDEALDHVLLFGPPGLGKTTMA 91

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            V+A ELGVN + TSGPVI KAGDL A+L +LE  DVLFIDEIHRL + VEE+LY AMED
Sbjct: 92  FVIANELGVNLKQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMED 151

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F +D+M+G G ++RSV ++L  FTLI ATTR G+L+NPL+ RFGI   + +YE +DL  I
Sbjct: 152 FYIDIMIGAGETSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYEQDDLTEI 211

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           V+R A++  + +T EAA E+++RSRGTPRIA RLL+RVRDFA++     I   I D AL 
Sbjct: 212 VERTAEIFEMEITHEAAEELSLRSRGTPRIANRLLKRVRDFAQIMGDGLIDDTITDKALS 271

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L +D  G D +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GFI 
Sbjct: 272 MLDVDHEGLDYVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIM 331

Query: 312 RTPRGRLLMPIAWQHLG 328
           RT  GR+    A++HLG
Sbjct: 332 RTRTGRVATRKAYEHLG 348


>gi|118444048|ref|YP_877906.1| Holliday junction DNA helicase RuvB [Clostridium novyi NT]
 gi|166231486|sp|A0PZV4|RUVB_CLONN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|118134504|gb|ABK61548.1| Holliday junction DNA helicase RuvB [Clostridium novyi NT]
          Length = 337

 Score =  346 bits (888), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 176/328 (53%), Positives = 233/328 (71%), Gaps = 3/328 (0%)

Query: 1   MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M DR  ++S +   ED D+   LRP  L E+ GQ +    L +F +AAK R EALDHVL 
Sbjct: 1   MEDR--MVSASYKNEDFDVEHSLRPEKLSEYIGQDKVKEKLSIFTKAAKMRNEALDHVLL 58

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++ARE+G   + TSGP I + GD+AA+LT+L D DVLFIDEIHRL+ 
Sbjct: 59  YGPPGLGKTTLANIIAREMGGTLKVTSGPAIERPGDMAAILTSLNDYDVLFIDEIHRLNR 118

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEEI+YPAMED  LD+++G+G +A+S++++L +FTLI ATTRVGLLT+PL+DRFG+   
Sbjct: 119 TVEEIMYPAMEDNVLDIVIGKGAAAKSIRLDLPKFTLIGATTRVGLLTSPLRDRFGVLSA 178

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           + FY  ++LK I+ R +K+ G+  T+EAA EIA RSRGTPRIA RLL+RVRD+ +V    
Sbjct: 179 MEFYNEDELKEIILRSSKILGVVTTEEAAFEIARRSRGTPRIANRLLKRVRDYCDVKGDG 238

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I   IA  AL  L ID  GFD++D + L  I  NF GGPVG+ET++  + E  D I+D+
Sbjct: 239 VIDINIAKNALSLLEIDGEGFDKIDNKILEAIIDNFKGGPVGLETLAYFIGEELDTIQDV 298

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHL 327
            EPY++Q+GFI R PRGR     A++HL
Sbjct: 299 YEPYLLQKGFIVRMPRGRKATEKAYRHL 326


>gi|150009504|ref|YP_001304247.1| Holliday junction DNA helicase RuvB [Parabacteroides distasonis
           ATCC 8503]
 gi|166231508|sp|A6LG11|RUVB_PARD8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|149937928|gb|ABR44625.1| Holliday junction DNA helicase RuvB [Parabacteroides distasonis
           ATCC 8503]
          Length = 341

 Score =  346 bits (887), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 174/309 (56%), Positives = 227/309 (73%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           ++LRP +L +F+GQ +   NLKVF+ AA+ R EALDHVL  GPPGLGKTTL+ ++A ELG
Sbjct: 21  NVLRPLSLRDFSGQAKVVENLKVFVMAARMRKEALDHVLLHGPPGLGKTTLSNIIANELG 80

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
           V F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS IVEE LY AMED+++D+++ 
Sbjct: 81  VGFKVTSGPVLDKPGDLAGVLTSLEKNDVLFIDEIHRLSPIVEEYLYSAMEDYRIDIVID 140

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199
           +GPSARS++I+L+ FTLI ATTR GLLT+PL+ RFGI + L +Y++E L  IV R A + 
Sbjct: 141 KGPSARSIQIDLAPFTLIGATTRSGLLTSPLRARFGINMHLEYYDMETLTKIVLRSANIL 200

Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259
            +     AA EIA RSRGTPRIA  LLRRVRDFA+V     I + IA  +L  L ID+ G
Sbjct: 201 NVKCELNAAREIASRSRGTPRIANALLRRVRDFAQVKGNGDIDKAIACFSLEALNIDRYG 260

Query: 260 FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLL 319
            DQ+D + LT I   F GGPVG+ TI+  L E    +E++ EP++I++GFI+RTPRGR +
Sbjct: 261 LDQIDNKLLTTIIDKFKGGPVGLTTIATALGEDPGTLEEVYEPFLIKEGFIKRTPRGREV 320

Query: 320 MPIAWQHLG 328
             +A+ HLG
Sbjct: 321 TDLAYTHLG 329


>gi|306834524|ref|ZP_07467637.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           bovis ATCC 700338]
 gi|304423326|gb|EFM26479.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           bovis ATCC 700338]
          Length = 332

 Score =  346 bits (887), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 167/307 (54%), Positives = 223/307 (72%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L+E+ GQ +  + LK+FIEAAK R E+LDHVL  GPPGLGKTT+A V+  ELGVN
Sbjct: 20  LRPQFLKEYIGQDKVKNQLKIFIEAAKLRDESLDHVLLFGPPGLGKTTMAFVITNELGVN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGP I KAGDL A+L +LE  DVLFIDEIHR+ + VEE+LY AMEDF +D+M+G G
Sbjct: 80  LKQTSGPAIEKAGDLVAILNDLEPGDVLFIDEIHRMPMAVEEVLYSAMEDFYIDIMIGNG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            ++RSV ++L  FTLI ATTR G+L+NPL+ RFGI   + +Y++EDL  IV+R A +  +
Sbjct: 140 ETSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYDVEDLTEIVERTADIFEM 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  EAA E+A RSRGTPRIA RLL+RVRD+A++     IT++I D AL  L +D  G D
Sbjct: 200 EIVHEAAQELARRSRGTPRIANRLLKRVRDYAQIMGDGIITKDITDKALTMLDVDHEGLD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   + GGPVG+ T+S  ++E RD +ED+ EPY+IQ+GFI RT  GR+   
Sbjct: 260 YIDQKILRTMIEVYNGGPVGLGTLSVNIAEERDTVEDMYEPYLIQKGFIMRTRTGRVATE 319

Query: 322 IAWQHLG 328
            A++HLG
Sbjct: 320 KAYEHLG 326


>gi|327403171|ref|YP_004344009.1| Holliday junction ATP-dependent DNA helicase ruvB [Fluviicola
           taffensis DSM 16823]
 gi|327318679|gb|AEA43171.1| Holliday junction ATP-dependent DNA helicase ruvB [Fluviicola
           taffensis DSM 16823]
          Length = 340

 Score =  346 bits (887), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 171/312 (54%), Positives = 228/312 (73%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
            +LRP+ L++F GQ +A  NL++F++AA  R+E LDHVL  GPPGLGKTTLA +++ EL 
Sbjct: 21  KVLRPKLLDDFAGQPQAVENLEIFVKAAIQRSEPLDHVLLHGPPGLGKTTLAHIISNELN 80

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
           V F+ TSGPV+ K GDLA LLTNL   DVLFIDEIHRLS +VEE LY AMED+ +D+++ 
Sbjct: 81  VGFKVTSGPVLDKPGDLAGLLTNLGHGDVLFIDEIHRLSPVVEEYLYSAMEDYCIDILID 140

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199
            G +ARSV+I+L+ FTLI ATTR GLLT PL+ RFGI +RLN+Y++E L +I++R A+L 
Sbjct: 141 SGANARSVQISLNPFTLIGATTRSGLLTAPLRARFGINLRLNYYDVETLASIIERSAELL 200

Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259
            + + ++AA EI+ RSRGTPRIA  +LRRVRDFA+V    TIT EI   AL  L +DK G
Sbjct: 201 NIPIQEQAAFEISRRSRGTPRIANAILRRVRDFAQVKGDGTITLEITKHALDALNVDKYG 260

Query: 260 FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLL 319
            D++D R L  +   F GGPVG+ TI+  + E    +E++ EP++IQ+GF+ RTPRGR  
Sbjct: 261 LDEMDNRILKTLIDKFKGGPVGLTTIATAIGENAGTLEEVYEPFLIQEGFLMRTPRGRKA 320

Query: 320 MPIAWQHLGIDI 331
              A+ HLG D+
Sbjct: 321 TEKAFIHLGFDM 332


>gi|82751239|ref|YP_416980.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus RF122]
 gi|97190337|sp|Q2YT89|RUVB_STAAB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|82656770|emb|CAI81199.1| Holliday junction DNA helicase [Staphylococcus aureus RF122]
          Length = 334

 Score =  346 bits (887), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 168/324 (51%), Positives = 231/324 (71%), Gaps = 1/324 (0%)

Query: 5   EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E ++ +++  E+ D  L LRP  L ++ GQ    SNL+VFI+AAK R E LDHVL  GPP
Sbjct: 3   ERMVDQSMHSEETDFELSLRPTRLRQYIGQNSIKSNLEVFIKAAKLRHEPLDHVLLFGPP 62

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTL+ ++A E+ VN R+ SGP + + GDLAA+L+ L+  DVLFIDEIHRLS +VEE
Sbjct: 63  GLGKTTLSNIIANEMEVNIRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSVVEE 122

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LYPAMEDF LD+++G+G  ARS++I+L  FTL+ ATTR G LT PL+DRFG+ +RL +Y
Sbjct: 123 VLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATTRAGSLTGPLRDRFGVHLRLEYY 182

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
              DLK I+ R A++ G  + DE+A E+A RSRGTPR+A RLL+RVRDF +V   + I  
Sbjct: 183 NESDLKEIIIRTAEVLGTGIDDESAIELAKRSRGTPRVANRLLKRVRDFQQVNEDEQIYI 242

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           E    AL  L +D+ G D +D + +  I + + GGPVG++TI+  + E R  IED+ EP+
Sbjct: 243 ETTKHALGLLQVDQHGLDYIDHKMMNCIIKQYNGGPVGLDTIAVTIGEERITIEDVYEPF 302

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHL 327
           +IQ+GF++RTPRGR   P+A+ H 
Sbjct: 303 LIQKGFLERTPRGRKATPLAYGHF 326


>gi|312866997|ref|ZP_07727208.1| Holliday junction DNA helicase RuvB [Streptococcus parasanguinis
           F0405]
 gi|311097479|gb|EFQ55712.1| Holliday junction DNA helicase RuvB [Streptococcus parasanguinis
           F0405]
          Length = 332

 Score =  346 bits (887), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 173/317 (54%), Positives = 227/317 (71%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +  E+A    LRP+ L E+ GQ +    LK+FIEAAK R EALDHVL  GPPGLGKTT+A
Sbjct: 10  MGDEEAVERTLRPQYLHEYIGQDKVKDQLKIFIEAAKLRDEALDHVLLFGPPGLGKTTMA 69

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            V+A ELGVN + TSGPVI KAGDL A+L +LE  DVLFIDEIHRL + VEE+LY AMED
Sbjct: 70  FVIANELGVNLKQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMED 129

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F +D+M+G G ++RSV ++L  FTLI ATTR G+L+NPL+ RFGI   + +YE +DL  I
Sbjct: 130 FYIDIMIGAGETSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYEQDDLTEI 189

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           V+R A++  + +T EAA E+++RSRGTPRIA RLL+RVRDFA++     I   I D AL 
Sbjct: 190 VERTAEIFEMEITHEAAEELSLRSRGTPRIANRLLKRVRDFAQIMGNGLIDDTITDKALS 249

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L +D  G D +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GFI 
Sbjct: 250 MLDVDHEGLDYVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIM 309

Query: 312 RTPRGRLLMPIAWQHLG 328
           RT  GR+    A++HLG
Sbjct: 310 RTRTGRVATRKAYEHLG 326


>gi|310829218|ref|YP_003961575.1| Holliday junction DNA helicase RuvB [Eubacterium limosum KIST612]
 gi|308740952|gb|ADO38612.1| Holliday junction DNA helicase RuvB [Eubacterium limosum KIST612]
          Length = 342

 Score =  346 bits (887), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 170/331 (51%), Positives = 238/331 (71%), Gaps = 3/331 (0%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M DR  +++   ++ D DI   LRP+ LE++ GQ      + +FI+AA+ R E LDHVL 
Sbjct: 1   MKDR--IVTSGFTETDIDIERSLRPQRLEDYIGQDRVKRQMAIFIQAAQKRNEPLDHVLL 58

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A+E+G N ++TSGP I K GDLAA+LT+L++ DVLFIDEIHRL  
Sbjct: 59  YGPPGLGKTTLANIIAQEMGTNIKTTSGPAIEKPGDLAAILTSLKEGDVLFIDEIHRLQR 118

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEE+LYPAMEDF LD+++G+GPSA+S++++L +FTL+ ATTR GLLT PL+DRFG+  R
Sbjct: 119 SVEEVLYPAMEDFVLDIIIGKGPSAKSIRLDLPKFTLVGATTRAGLLTAPLRDRFGVVQR 178

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L  Y   +L TI+ R A++  + + ++ A E+++RSRGTPRIA RLL+RVRDFAE+    
Sbjct: 179 LELYNQVELATIISRSAEILSVNLDEKGAEELSVRSRGTPRIANRLLKRVRDFAEIEGKG 238

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  E A  AL    +D  G D++D   LT I   F GGPVGI+T++A + E R+ IE++
Sbjct: 239 VIDLETARTALELFEVDAKGLDEIDRIMLTTIVEKFDGGPVGIDTLAAAIGEERNTIEEV 298

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
            EPY+IQ G++ RTPRGR++    ++HLG++
Sbjct: 299 YEPYLIQLGYLARTPRGRVITSGGYRHLGLE 329


>gi|300856545|ref|YP_003781529.1| Holliday junction DNA helicase [Clostridium ljungdahlii DSM 13528]
 gi|300436660|gb|ADK16427.1| Holliday junction DNA helicase [Clostridium ljungdahlii DSM 13528]
          Length = 348

 Score =  346 bits (887), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 169/318 (53%), Positives = 228/318 (71%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           N+ ++  +   LRP+ L E+ GQ +    LK+FIEAA+ R EALDHVL  GPPGLGKTTL
Sbjct: 10  NIKEDTENEYSLRPKRLNEYIGQKKVKDKLKIFIEAARNRKEALDHVLLYGPPGLGKTTL 69

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           A ++A E+G N + TSGP I +AGDLAA+LT+L D DVLFIDEIHRL+  VEEILYPAME
Sbjct: 70  ANIIAVEMGGNLKITSGPAIERAGDLAAILTSLNDMDVLFIDEIHRLNRSVEEILYPAME 129

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           D+ LD+++G+G +A+S++++L +FTLI ATTRVGLLT PL+DRFG+   + FY  ++L  
Sbjct: 130 DYALDIVIGKGAAAKSIRLDLPKFTLIGATTRVGLLTAPLRDRFGVLCPMEFYREDELSE 189

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           I+ R A +  + +  +AA EI  RSRGTPRIA RLL+RVRD++EV     I  + + AAL
Sbjct: 190 IIVRSADILKVKIETDAAFEIGKRSRGTPRIANRLLKRVRDYSEVKGNGIIDVKTSQAAL 249

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
             + +D  GFD +D + L  I  NF GGPVGIET++  + E  D I+D+ EPY++Q+GFI
Sbjct: 250 ELMEVDNEGFDSIDNKILKAIIDNFNGGPVGIETLAYFIGEELDTIQDVYEPYLLQKGFI 309

Query: 311 QRTPRGRLLMPIAWQHLG 328
            RTPRGR+    A++H  
Sbjct: 310 IRTPRGRVASDSAYRHFN 327


>gi|256838236|ref|ZP_05543746.1| Holliday junction DNA helicase RuvB [Parabacteroides sp. D13]
 gi|256739155|gb|EEU52479.1| Holliday junction DNA helicase RuvB [Parabacteroides sp. D13]
          Length = 345

 Score =  346 bits (887), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 174/309 (56%), Positives = 227/309 (73%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           ++LRP +L +F+GQ +   NLKVF+ AA+ R EALDHVL  GPPGLGKTTL+ ++A ELG
Sbjct: 25  NVLRPLSLRDFSGQAKVVENLKVFVMAARMRKEALDHVLLHGPPGLGKTTLSNIIANELG 84

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
           V F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS IVEE LY AMED+++D+++ 
Sbjct: 85  VGFKVTSGPVLDKPGDLAGVLTSLEKNDVLFIDEIHRLSPIVEEYLYSAMEDYRIDIVID 144

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199
           +GPSARS++I+L+ FTLI ATTR GLLT+PL+ RFGI + L +Y++E L  IV R A + 
Sbjct: 145 KGPSARSIQIDLAPFTLIGATTRSGLLTSPLRARFGINMHLEYYDMETLTKIVLRSANIL 204

Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259
            +     AA EIA RSRGTPRIA  LLRRVRDFA+V     I + IA  +L  L ID+ G
Sbjct: 205 NVKCELNAAREIASRSRGTPRIANALLRRVRDFAQVKGNGDIDKAIACFSLEALNIDRYG 264

Query: 260 FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLL 319
            DQ+D + LT I   F GGPVG+ TI+  L E    +E++ EP++I++GFI+RTPRGR +
Sbjct: 265 LDQIDNKLLTTIIDKFQGGPVGLTTIATALGEDPGTLEEVYEPFLIKEGFIKRTPRGREV 324

Query: 320 MPIAWQHLG 328
             +A+ HLG
Sbjct: 325 TDLAYTHLG 333


>gi|255013205|ref|ZP_05285331.1| Holliday junction DNA helicase RuvB [Bacteroides sp. 2_1_7]
          Length = 341

 Score =  346 bits (887), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 174/309 (56%), Positives = 227/309 (73%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           ++LRP +L +F+GQ +   NLKVF+ AA+ R EALDHVL  GPPGLGKTTL+ ++A ELG
Sbjct: 21  NVLRPLSLRDFSGQAKVVENLKVFVMAARMRKEALDHVLLHGPPGLGKTTLSNIIANELG 80

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
           V F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS IVEE LY AMED+++D+++ 
Sbjct: 81  VGFKVTSGPVLDKPGDLAGVLTSLEKNDVLFIDEIHRLSPIVEEYLYSAMEDYRIDIVID 140

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199
           +GPSARS++I+L+ FTLI ATTR GLLT+PL+ RFGI + L +Y++E L  IV R A + 
Sbjct: 141 KGPSARSIQIDLAPFTLIGATTRSGLLTSPLRARFGINMHLEYYDMETLTKIVLRSANIL 200

Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259
            +     AA EIA RSRGTPRIA  LLRRVRDFA+V     I + IA  +L  L ID+ G
Sbjct: 201 NVKCELNAAREIASRSRGTPRIANALLRRVRDFAQVKGNGDIDKAIACFSLEALNIDRYG 260

Query: 260 FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLL 319
            DQ+D + LT I   F GGPVG+ TI+  L E    +E++ EP++I++GFI+RTPRGR +
Sbjct: 261 LDQIDNKLLTTIIDKFQGGPVGLTTIATALGEDPGTLEEVYEPFLIKEGFIKRTPRGREV 320

Query: 320 MPIAWQHLG 328
             +A+ HLG
Sbjct: 321 TDLAYTHLG 329


>gi|49483885|ref|YP_041109.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|57650522|ref|YP_186535.1| Holliday junction DNA helicase B [Staphylococcus aureus subsp.
           aureus COL]
 gi|87160402|ref|YP_494292.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|88195452|ref|YP_500256.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|151221755|ref|YP_001332577.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|161509867|ref|YP_001575526.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|221141090|ref|ZP_03565583.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|253732297|ref|ZP_04866462.1| Holliday junction DNA helicase B [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253733108|ref|ZP_04867273.1| Holliday junction DNA helicase B [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|257428425|ref|ZP_05604823.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257431063|ref|ZP_05607442.1| Holliday junction DNA helicase subunit RuvB [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257433749|ref|ZP_05610107.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257436664|ref|ZP_05612708.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus M876]
 gi|258450533|ref|ZP_05698595.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A5948]
 gi|262048630|ref|ZP_06021513.1| holliday junction DNA helicase [Staphylococcus aureus D30]
 gi|262051291|ref|ZP_06023515.1| holliday junction DNA helicase [Staphylococcus aureus 930918-3]
 gi|282904221|ref|ZP_06312109.1| holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus C160]
 gi|282906047|ref|ZP_06313902.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282908960|ref|ZP_06316778.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282911277|ref|ZP_06319079.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282914446|ref|ZP_06322232.1| holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus M899]
 gi|282916909|ref|ZP_06324667.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus D139]
 gi|282919415|ref|ZP_06327150.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus C427]
 gi|282920190|ref|ZP_06327915.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A9765]
 gi|282924792|ref|ZP_06332458.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus C101]
 gi|283770715|ref|ZP_06343607.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus H19]
 gi|283958401|ref|ZP_06375852.1| holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|284024697|ref|ZP_06379095.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus 132]
 gi|293503519|ref|ZP_06667366.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293510538|ref|ZP_06669243.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus M809]
 gi|293537081|ref|ZP_06671761.1| holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus M1015]
 gi|294848670|ref|ZP_06789416.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A9754]
 gi|295428216|ref|ZP_06820848.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297590816|ref|ZP_06949454.1| crossover junction ATP-dependent DNA helicase RuvB [Staphylococcus
           aureus subsp. aureus MN8]
 gi|304380762|ref|ZP_07363430.1| crossover junction ATP-dependent DNA helicase RuvB [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|56749558|sp|Q6GG63|RUVB_STAAR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|71153737|sp|Q5HFC2|RUVB_STAAC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|97190331|sp|Q2FG86|RUVB_STAA3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|123407042|sp|Q2FXT4|RUVB_STAA8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|172048927|sp|A6QHI3|RUVB_STAAE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|189046054|sp|A8Z2G9|RUVB_STAAT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|49242014|emb|CAG40712.1| Holliday junction DNA helicase [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|57284708|gb|AAW36802.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus COL]
 gi|87126376|gb|ABD20890.1| holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|87203010|gb|ABD30820.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|150374555|dbj|BAF67815.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|160368676|gb|ABX29647.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|253724086|gb|EES92815.1| Holliday junction DNA helicase B [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253728864|gb|EES97593.1| Holliday junction DNA helicase B [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|257275266|gb|EEV06753.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257278266|gb|EEV08908.1| Holliday junction DNA helicase subunit RuvB [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257281842|gb|EEV11979.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257284015|gb|EEV14138.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus M876]
 gi|257861691|gb|EEV84490.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A5948]
 gi|259160928|gb|EEW45948.1| holliday junction DNA helicase [Staphylococcus aureus 930918-3]
 gi|259163277|gb|EEW47836.1| holliday junction DNA helicase [Staphylococcus aureus D30]
 gi|269941126|emb|CBI49512.1| Holliday junction DNA helicase [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282313158|gb|EFB43554.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus C101]
 gi|282317225|gb|EFB47599.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus C427]
 gi|282319396|gb|EFB49748.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus D139]
 gi|282321627|gb|EFB51952.1| holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus M899]
 gi|282324972|gb|EFB55282.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282327224|gb|EFB57519.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282331339|gb|EFB60853.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282594538|gb|EFB99523.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A9765]
 gi|282595839|gb|EFC00803.1| holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus C160]
 gi|283460862|gb|EFC07952.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus H19]
 gi|283790550|gb|EFC29367.1| holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|290919926|gb|EFD96994.1| holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291095185|gb|EFE25450.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291466429|gb|EFF08950.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus M809]
 gi|294824696|gb|EFG41119.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A9754]
 gi|295128574|gb|EFG58208.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297575702|gb|EFH94418.1| crossover junction ATP-dependent DNA helicase RuvB [Staphylococcus
           aureus subsp. aureus MN8]
 gi|298694920|gb|ADI98142.1| Holliday junction DNA helicase [Staphylococcus aureus subsp. aureus
           ED133]
 gi|302751469|gb|ADL65646.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
           subsp. aureus str. JKD6008]
 gi|304340699|gb|EFM06631.1| crossover junction ATP-dependent DNA helicase RuvB [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|312437892|gb|ADQ76963.1| crossover junction ATP-dependent DNA helicase RuvB [Staphylococcus
           aureus subsp. aureus TCH60]
 gi|315195544|gb|EFU25931.1| Holliday junction DNA helicase B [Staphylococcus aureus subsp.
           aureus CGS00]
 gi|315198658|gb|EFU28986.1| Holliday junction DNA helicase B [Staphylococcus aureus subsp.
           aureus CGS01]
 gi|320140472|gb|EFW32326.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus MRSA131]
 gi|320144011|gb|EFW35780.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus MRSA177]
 gi|323440806|gb|EGA98515.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus O11]
 gi|323442845|gb|EGB00470.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus O46]
 gi|329314315|gb|AEB88728.1| Holliday junction ATP-dependent DNA helicase ruvB [Staphylococcus
           aureus subsp. aureus T0131]
 gi|329728400|gb|EGG64837.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus 21189]
          Length = 334

 Score =  346 bits (887), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 167/324 (51%), Positives = 232/324 (71%), Gaps = 1/324 (0%)

Query: 5   EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E ++ +++  E+ D  L LRP  L ++ GQ    SNL+VFI+AAK R E LDHVL  GPP
Sbjct: 3   ERMVDQSMHSEETDFELSLRPTRLRQYIGQNSIKSNLEVFIKAAKLRHEPLDHVLLFGPP 62

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTL+ ++A E+ VN R+ SGP + + GDLAA+L+ L+  DVLFIDEIHRLS +VEE
Sbjct: 63  GLGKTTLSNIIANEMEVNIRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSVVEE 122

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LYPAMEDF LD+++G+G  ARS++I+L  FTL+ ATTR G LT PL+DRFG+ +RL +Y
Sbjct: 123 VLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATTRAGSLTGPLRDRFGVHLRLEYY 182

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
              DLK I+ R A++ G  + +E+A E+A RSRGTPR+A RLL+RVRDF +V   + I  
Sbjct: 183 NESDLKEIIIRTAEVLGTGIDEESAIELAKRSRGTPRVANRLLKRVRDFQQVNEDEQIYI 242

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           E    AL  L +D+ G D +D + +  I + + GGPVG++TI+  + E R  IED+ EP+
Sbjct: 243 ETTKHALGLLQVDQHGLDYIDHKMMNCIIKQYNGGPVGLDTIAVTIGEERITIEDVYEPF 302

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHL 327
           +IQ+GF++RTPRGR   P+A++H 
Sbjct: 303 LIQKGFLERTPRGRKATPLAYEHF 326


>gi|15924631|ref|NP_372165.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|15927221|ref|NP_374754.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus N315]
 gi|21283320|ref|NP_646408.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus MW2]
 gi|49486474|ref|YP_043695.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|148268121|ref|YP_001247064.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus JH9]
 gi|150394189|ref|YP_001316864.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156979959|ref|YP_001442218.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus Mu3]
 gi|253317208|ref|ZP_04840421.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|255006426|ref|ZP_05145027.2| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257793714|ref|ZP_05642693.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A9781]
 gi|258410987|ref|ZP_05681267.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A9763]
 gi|258420212|ref|ZP_05683167.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A9719]
 gi|258438214|ref|ZP_05689498.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A9299]
 gi|258443677|ref|ZP_05692016.1| Holliday junction DNA helicase B [Staphylococcus aureus A8115]
 gi|258446884|ref|ZP_05695038.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A6300]
 gi|258448798|ref|ZP_05696910.1| Holliday junction DNA helicase subunit RuvB [Staphylococcus aureus
           A6224]
 gi|258453754|ref|ZP_05701729.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A5937]
 gi|269203266|ref|YP_003282535.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282893145|ref|ZP_06301379.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A8117]
 gi|282928276|ref|ZP_06335881.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A10102]
 gi|295406762|ref|ZP_06816567.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A8819]
 gi|296275926|ref|ZP_06858433.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297207638|ref|ZP_06924073.1| crossover junction ATP-dependent DNA helicase RuvB [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|300911721|ref|ZP_07129164.1| crossover junction ATP-dependent DNA helicase RuvB [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|54039579|sp|P66758|RUVB_STAAN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|54039580|sp|P66759|RUVB_STAAW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|54042207|sp|P66757|RUVB_STAAM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|56749511|sp|Q6G8S8|RUVB_STAAS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|166231559|sp|A7X357|RUVB_STAA1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|189046052|sp|A6U2A9|RUVB_STAA2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|189046053|sp|A5ITG5|RUVB_STAA9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|13701439|dbj|BAB42733.1| holliday junction DNA helicase [Staphylococcus aureus subsp. aureus
           N315]
 gi|14247413|dbj|BAB57803.1| holliday junction DNA helicase [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|21204760|dbj|BAB95456.1| holliday junction DNA helicase [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49244917|emb|CAG43378.1| Holliday junction DNA helicase [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|147741190|gb|ABQ49488.1| Holliday junction DNA helicase subunit RuvB [Staphylococcus aureus
           subsp. aureus JH9]
 gi|149946641|gb|ABR52577.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156722094|dbj|BAF78511.1| holliday junction DNA helicase [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|257787686|gb|EEV26026.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A9781]
 gi|257840137|gb|EEV64601.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A9763]
 gi|257843923|gb|EEV68317.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A9719]
 gi|257848258|gb|EEV72249.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A9299]
 gi|257851083|gb|EEV75026.1| Holliday junction DNA helicase B [Staphylococcus aureus A8115]
 gi|257854459|gb|EEV77408.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A6300]
 gi|257858076|gb|EEV80965.1| Holliday junction DNA helicase subunit RuvB [Staphylococcus aureus
           A6224]
 gi|257864074|gb|EEV86827.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A5937]
 gi|262075556|gb|ACY11529.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282590083|gb|EFB95165.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A10102]
 gi|282764463|gb|EFC04589.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A8117]
 gi|285817323|gb|ADC37810.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus
           04-02981]
 gi|294968509|gb|EFG44533.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A8819]
 gi|296887655|gb|EFH26553.1| crossover junction ATP-dependent DNA helicase RuvB [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|300885967|gb|EFK81169.1| crossover junction ATP-dependent DNA helicase RuvB [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|312830027|emb|CBX34869.1| holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus ECT-R 2]
 gi|315129926|gb|EFT85916.1| Holliday junction DNA helicase B [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|329727375|gb|EGG63831.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus 21172]
 gi|329733177|gb|EGG69514.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 334

 Score =  345 bits (886), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 167/324 (51%), Positives = 232/324 (71%), Gaps = 1/324 (0%)

Query: 5   EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E ++ +++  E+ D  L LRP  L ++ GQ    SNL+VFI+AAK R E LDHVL  GPP
Sbjct: 3   ERMVDQSMHSEETDFELSLRPTRLRQYIGQNSIKSNLEVFIKAAKLRHEPLDHVLLFGPP 62

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTL+ ++A E+ VN R+ SGP + + GDLAA+L+ L+  DVLFIDEIHRLS +VEE
Sbjct: 63  GLGKTTLSNIIANEMEVNIRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSVVEE 122

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LYPAMEDF LD+++G+G  ARS++I+L  FTL+ ATTR G LT PL+DRFG+ +RL +Y
Sbjct: 123 VLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATTRAGSLTGPLRDRFGVHLRLEYY 182

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
              DLK I+ R A++ G  + +E+A E+A RSRGTPR+A RLL+RVRDF +V   + I  
Sbjct: 183 NESDLKEIIIRTAEVLGTGIDEESAIELAKRSRGTPRVANRLLKRVRDFQQVNEDEQIYI 242

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           E    AL  L +D+ G D +D + +  I + + GGPVG++TI+  + E R  IED+ EP+
Sbjct: 243 ETTKHALGLLQVDQHGLDYIDHKMMNCIIKQYNGGPVGLDTIAVTIGEERITIEDVYEPF 302

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHL 327
           +IQ+GF++RTPRGR   P+A++H 
Sbjct: 303 LIQKGFLERTPRGRKATPLAYEHF 326


>gi|332360215|gb|EGJ38029.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           sanguinis SK1056]
          Length = 332

 Score =  345 bits (886), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 168/309 (54%), Positives = 226/309 (73%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L+E+ GQ +  + LK+FIEAAK R EALDH L  GPPGLGKTT+A V+A ELGVN
Sbjct: 20  LRPQYLQEYIGQDKVKNQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANELGVN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGPVI K+GDL A+L +LE  DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G
Sbjct: 80  LKQTSGPVIEKSGDLVAILNDLEPGDVLFIDEIHRLPMAVEEVLYSAMEDFYIDIMIGSG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            ++RSV ++L  FTLI ATTR G+L+NPL+ RFGI   + +YE  DL  IV+R A++  +
Sbjct: 140 ETSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYEAGDLTEIVERTAEIFEM 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T EAA E+A+RSRGTPRIA RLL+RVRD+A++     I  +I D AL  L +D+ G D
Sbjct: 200 DITHEAAKELALRSRGTPRIANRLLKRVRDYAQIMGNGLIDDKITDQALSMLDVDQEGLD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GF+ RT  GR+   
Sbjct: 260 YVDQKILKTMIEVYGGGPVGLGTLSINIAEERETVEDMYEPYLIQKGFVMRTRTGRVATR 319

Query: 322 IAWQHLGID 330
            A++HLG +
Sbjct: 320 KAYEHLGYE 328


>gi|199598073|ref|ZP_03211496.1| Holliday junction DNA helicase B [Lactobacillus rhamnosus HN001]
 gi|229553781|ref|ZP_04442506.1| crossover junction endoribonuclease subunit B [Lactobacillus
           rhamnosus LMS2-1]
 gi|258507748|ref|YP_003170499.1| Holliday junction DNA helicase RuvB [Lactobacillus rhamnosus GG]
 gi|258538938|ref|YP_003173437.1| Holliday junction DNA helicase RuvB [Lactobacillus rhamnosus Lc
           705]
 gi|199590999|gb|EDY99082.1| Holliday junction DNA helicase B [Lactobacillus rhamnosus HN001]
 gi|229312855|gb|EEN78828.1| crossover junction endoribonuclease subunit B [Lactobacillus
           rhamnosus LMS2-1]
 gi|257147675|emb|CAR86648.1| Holliday junction DNA helicase RuvB [Lactobacillus rhamnosus GG]
 gi|257150614|emb|CAR89586.1| Holliday junction DNA helicase RuvB [Lactobacillus rhamnosus Lc
           705]
 gi|259649096|dbj|BAI41258.1| holliday junction DNA helicase RuvB [Lactobacillus rhamnosus GG]
          Length = 348

 Score =  345 bits (886), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 168/312 (53%), Positives = 219/312 (70%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPR L ++ GQ      L V+I AAK R E+LDHVL  GPPGLGKTTLA V+A E+GVN
Sbjct: 26  LRPRRLAQYIGQDRVKHQLTVYITAAKQREESLDHVLLYGPPGLGKTTLALVIANEMGVN 85

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R+TSGP I K GDL ALL  L   DVLF+DEIHRL  IVEE+LY AMEDF +D++VG+G
Sbjct: 86  IRTTSGPAIEKPGDLVALLNELRPGDVLFVDEIHRLPKIVEEMLYSAMEDFYIDIVVGQG 145

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+A  V   L  FTLI ATTR G+L+ PL+DRFGI   + +Y  +DL  IV+R A +  +
Sbjct: 146 PTAHPVHFPLPPFTLIGATTRAGMLSAPLRDRFGISEHMAYYSPDDLSEIVKRSANVFNM 205

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
           A+  E A EIA RSRGTPR+A RLL+R+RDFAEVA    +   + D AL +L +D  G D
Sbjct: 206 AIDAEGAYEIARRSRGTPRVANRLLKRIRDFAEVAGKSPVDLAMVDHALDQLQVDAQGLD 265

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           Q+D + LT + R++ GGPVG+ TI+A + E    IE++ EPY++Q GF++RTPRGR++ P
Sbjct: 266 QIDRKLLTFMIRDYQGGPVGLSTIAANIGEEMATIEEMYEPYLLQIGFLKRTPRGRMVTP 325

Query: 322 IAWQHLGIDIPH 333
             + H+G+ +P 
Sbjct: 326 AGFAHMGMTMPQ 337


>gi|270290976|ref|ZP_06197199.1| Holliday junction DNA helicase RuvB [Pediococcus acidilactici 7_4]
 gi|270280372|gb|EFA26207.1| Holliday junction DNA helicase RuvB [Pediococcus acidilactici 7_4]
          Length = 337

 Score =  345 bits (886), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 174/331 (52%), Positives = 229/331 (69%), Gaps = 2/331 (0%)

Query: 2   MDREGLLSRNV--SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           MD E + S  V  +QE+A+   LRP+ L ++ GQ +    L V+IEAAK R EALDHVL 
Sbjct: 1   MDDERITSSAVQGAQEEANEQSLRPQNLRQYIGQAQIKHELSVYIEAAKKREEALDHVLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA V+A E+ V  R+TSGP I K GDL ALL  L+  D+LFIDEIHRL  
Sbjct: 61  YGPPGLGKTTLAMVIANEMAVQIRTTSGPAIEKPGDLVALLNELQPGDILFIDEIHRLPK 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LY AMEDF +D++VG+GP+A  +   L  FTLI ATTR GLL+ PL+DRFGI   
Sbjct: 121 VVEEMLYSAMEDFFVDIVVGQGPTAHPIHFPLPPFTLIGATTRAGLLSAPLRDRFGIVEH 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           +N+Y  +DL  IV+R A++    + D+ A EIA RSRGTPRI+ RLL+RVRDFAEV +  
Sbjct: 181 MNYYTEDDLANIVKRSAEIFKTNIDDQGAHEIARRSRGTPRISNRLLKRVRDFAEVENDA 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I R +   +L  L +D  G DQ D + LT +   +GGGPVG+ TI+A + E  D I ++
Sbjct: 241 HIDRTLVQTSLKLLQVDDRGLDQTDKKVLTTMIELYGGGPVGLTTIAANIGEEPDTISEM 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
            EPY++Q GF++RTPRGR++   A+ HLG++
Sbjct: 301 YEPYLLQIGFLKRTPRGRMVTERAYAHLGLE 331


>gi|314933805|ref|ZP_07841170.1| holliday junction DNA helicase RuvB [Staphylococcus caprae C87]
 gi|313653955|gb|EFS17712.1| holliday junction DNA helicase RuvB [Staphylococcus caprae C87]
          Length = 334

 Score =  345 bits (886), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 170/328 (51%), Positives = 228/328 (69%), Gaps = 2/328 (0%)

Query: 2   MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD+  ++ +    ED+D  L LRP  L+++ GQ    SNL+VFI+AAK R E LDHVL  
Sbjct: 1   MDKR-MVDQQFHNEDSDFELSLRPTKLKQYIGQTSIKSNLEVFIKAAKLREEPLDHVLLF 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTL+ ++A E+ VN R+ SGP + + GDLAA+L+ L+  DVLFIDEIHRLS  
Sbjct: 60  GPPGLGKTTLSNIIANEMEVNIRTISGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSA 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDF LD+++G+G  ARS++I+L  FTL+ ATTR G LT PL+DRFG+ +RL
Sbjct: 120 VEEVLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATTRAGSLTGPLRDRFGVHLRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y   DLK I+ R A + G  + +E+A E+A RSRGTPR+A RLL+RVRDF +V     
Sbjct: 180 EYYNENDLKEIITRTADVLGTGIDEESALELARRSRGTPRVANRLLKRVRDFQQVNEDDQ 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I  E    AL  L +DK G D +D + +  I   + GGPVG++TI+  + E R  IED+ 
Sbjct: 240 IYIETTKRALQLLQVDKEGLDYIDHKMMNCIINQYNGGPVGLDTIAVSIGEERITIEDVY 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
           EP++IQ+GF++RTPRGR   P A+ H  
Sbjct: 300 EPFLIQKGFLERTPRGRKATPFAYVHFN 327


>gi|324990050|gb|EGC21991.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           sanguinis SK353]
 gi|324995783|gb|EGC27694.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           sanguinis SK678]
 gi|325686360|gb|EGD28390.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           sanguinis SK72]
 gi|332363661|gb|EGJ41441.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           sanguinis SK49]
          Length = 332

 Score =  345 bits (886), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 168/309 (54%), Positives = 225/309 (72%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L+E+ GQ +    LK+FIEAAK R EALDH L  GPPGLGKTT+A V+A ELGVN
Sbjct: 20  LRPQYLQEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANELGVN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGPVI K+GDL A+L +LE  DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G
Sbjct: 80  LKQTSGPVIEKSGDLVAILNDLEPGDVLFIDEIHRLPMAVEEVLYSAMEDFYIDIMIGSG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            ++RSV ++L  FTLI ATTR G+L+NPL+ RFGI   + +YE  DL  IV+R A++  +
Sbjct: 140 ETSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYEAGDLTEIVERTAEIFEM 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T EAA E+A+RSRGTPRIA RLL+RVRD+A++     I  +I D AL  L +D+ G D
Sbjct: 200 DITHEAAKELALRSRGTPRIANRLLKRVRDYAQIMGNGLIDDKITDQALSMLDVDQEGLD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GF+ RT  GR+   
Sbjct: 260 YVDQKILKTMIEVYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFVMRTRTGRVATR 319

Query: 322 IAWQHLGID 330
            A++HLG +
Sbjct: 320 KAYEHLGYE 328


>gi|313897405|ref|ZP_07830948.1| Holliday junction DNA helicase RuvB [Clostridium sp. HGF2]
 gi|312957775|gb|EFR39400.1| Holliday junction DNA helicase RuvB [Clostridium sp. HGF2]
          Length = 337

 Score =  345 bits (886), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 172/322 (53%), Positives = 232/322 (72%), Gaps = 1/322 (0%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           N SQ   + + LRP++L E+ GQ +   NL VFIEAAK R EALDHVL  GPPGLGKTTL
Sbjct: 7   NESQSMDEEASLRPQSLREYIGQRQLKENLSVFIEAAKQRNEALDHVLLYGPPGLGKTTL 66

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           + ++A E+G + ++TSGP I K GDLAA+L+ LE  DVLFIDEIHRL   VEEILYPAME
Sbjct: 67  SYILANEMGGSIKTTSGPSIEKGGDLAAILSTLEPGDVLFIDEIHRLPKQVEEILYPAME 126

Query: 131 DFQLDLMVG-EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           D+ +D++VG +  + RS+++ L  FTL+ ATTR G LT PL+DRFGI  +L FYE+ +L+
Sbjct: 127 DYCIDIVVGKDSATTRSIRLELPPFTLVGATTRAGDLTAPLRDRFGIVSQLEFYELAELQ 186

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            I+ R +++    + +EA  EIA+RSRGTPRIA RL RRVRDFA V +   I+++IA+ A
Sbjct: 187 QIISRTSRVMDTEIEEEAVLEIALRSRGTPRIANRLFRRVRDFATVMNDGIISKQIAEMA 246

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           L +L +D +G D +D +YL  I   F GGPVG+E +S+ + E    +ED+ EPY++Q GF
Sbjct: 247 LDKLKVDHLGLDNVDHKYLKGIIERFKGGPVGLEALSSSIGEETMTLEDVYEPYLLQIGF 306

Query: 310 IQRTPRGRLLMPIAWQHLGIDI 331
           I RTPRGR++   A++HLG D+
Sbjct: 307 INRTPRGRVVTEKAYRHLGYDL 328


>gi|329960656|ref|ZP_08298999.1| Holliday junction DNA helicase RuvB [Bacteroides fluxus YIT 12057]
 gi|328532529|gb|EGF59323.1| Holliday junction DNA helicase RuvB [Bacteroides fluxus YIT 12057]
          Length = 345

 Score =  345 bits (886), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 170/307 (55%), Positives = 227/307 (73%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP   E+F+GQ +   NL++F++AA+ R EALDHVL  GPPGLGKTTL+ ++A ELGV 
Sbjct: 25  LRPLNFEDFSGQDKVVDNLRIFVKAARLREEALDHVLLHGPPGLGKTTLSNIIANELGVG 84

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS +VEE LY AMED+++D+M+ +G
Sbjct: 85  FKITSGPVLDKPGDLAGILTSLEPNDVLFIDEIHRLSPVVEEYLYSAMEDYRIDIMIDKG 144

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSARS++I+L+ FTL+ ATTR GLLT PL+ RFGI + L +Y+ + L  I++R A +  +
Sbjct: 145 PSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGINLHLEYYDDDVLSGIIRRSASILDV 204

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
             +  AA EIA RSRGTPRIA  LLRRVRDFA+V  + +I  EIA  AL  L IDK G D
Sbjct: 205 PCSARAAAEIAGRSRGTPRIANALLRRVRDFAQVKGSGSIDTEIAQFALEALNIDKYGLD 264

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           ++D + L  I   F GGPVG+ TI+  L E    IE++ EP++I++GF++RTPRGR +  
Sbjct: 265 EIDNKILCTIIDKFKGGPVGLTTIATALGEDAGTIEEVYEPFLIKEGFLKRTPRGREVTE 324

Query: 322 IAWQHLG 328
           +A++HLG
Sbjct: 325 LAYKHLG 331


>gi|312892031|ref|ZP_07751532.1| Holliday junction DNA helicase RuvB [Mucilaginibacter paludis DSM
           18603]
 gi|311295528|gb|EFQ72696.1| Holliday junction DNA helicase RuvB [Mucilaginibacter paludis DSM
           18603]
          Length = 340

 Score =  345 bits (885), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 177/319 (55%), Positives = 228/319 (71%), Gaps = 1/319 (0%)

Query: 11  NVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           N+S  + DI  +LRP+  E+FTGQ +  +NLK+F++AAK R EALDHVL  GPPGLGKTT
Sbjct: 11  NLSPAERDIEKVLRPQAFEDFTGQHKILANLKIFVQAAKLRGEALDHVLLHGPPGLGKTT 70

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           L+ ++A E+G   + TSGPV+ K GDLA LLTNLE  D+LFIDEIHRLS +VEE LY AM
Sbjct: 71  LSHIIANEMGSGIKITSGPVLDKPGDLAGLLTNLESGDILFIDEIHRLSPLVEEYLYSAM 130

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           EDF++D+M+  GP+ARSV+I+L+ FTL+ ATTR GLLT PL+ RFGI  RL +Y+ + L 
Sbjct: 131 EDFKIDIMLESGPNARSVQISLNPFTLVGATTRSGLLTAPLRARFGINSRLEYYDAKLLT 190

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
           TIV R A +    + DEAA EIA RSRGTPRIA  LLRR RDFA+V     I  EIA  A
Sbjct: 191 TIVLRSASILKTPIRDEAAYEIARRSRGTPRIANSLLRRTRDFAQVKGNGQIDTEIARYA 250

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           L  L +D+ G D++D + L  I   F GGPVG++TI+  + E    IE++ EP++IQ+GF
Sbjct: 251 LNALNVDEHGLDEMDNKILLTIIDKFKGGPVGLKTIATAVGEDEGTIEEVYEPFLIQEGF 310

Query: 310 IQRTPRGRLLMPIAWQHLG 328
           + RT RGR     A++HLG
Sbjct: 311 LMRTSRGREATDNAYKHLG 329


>gi|168187974|ref|ZP_02622609.1| holliday junction DNA helicase RuvB [Clostridium botulinum C str.
           Eklund]
 gi|169294185|gb|EDS76318.1| holliday junction DNA helicase RuvB [Clostridium botulinum C str.
           Eklund]
          Length = 337

 Score =  345 bits (885), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 172/324 (53%), Positives = 233/324 (71%), Gaps = 1/324 (0%)

Query: 5   EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E ++S +  +ED D+   LRP  L E+ GQ +    L +F +AAK R EALDHVL  GPP
Sbjct: 3   ERMISASYKKEDFDVEHSLRPEKLSEYIGQDKVKEKLSIFTKAAKMRKEALDHVLLYGPP 62

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++ARE+G   + TSGP I + GD+AA+LT+L D DVLFIDEIHRL+  VEE
Sbjct: 63  GLGKTTLANIIAREMGGTLKVTSGPAIERPGDMAAILTSLNDYDVLFIDEIHRLNRTVEE 122

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           I+YPAMED  LD+++G+G +A+S++++L +FTLI ATTRVGLLT+PL+DRFG+   + FY
Sbjct: 123 IMYPAMEDNVLDIVIGKGAAAKSIRLDLPKFTLIGATTRVGLLTSPLRDRFGVLSAMEFY 182

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
             ++LK I+ R +K+ G+  T++AA EIA RSRGTPRIA RLL+RVRD+ +V     I  
Sbjct: 183 NEDELKEIILRSSKILGVVTTEDAAFEIARRSRGTPRIANRLLKRVRDYCDVKGDGVIDI 242

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
            I+  AL  L ID+ GFD++D + L  I  NF GGPVG+ET++  + E  D I+D+ EPY
Sbjct: 243 NISKNALNLLEIDEEGFDRIDNKILEAIIDNFKGGPVGLETLAYFIGEELDTIQDVYEPY 302

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHL 327
           ++Q+GFI R PRGR     A++HL
Sbjct: 303 LLQKGFIVRMPRGRKATEKAYRHL 326


>gi|312134959|ref|YP_004002297.1| holliday junction DNA helicase ruvb [Caldicellulosiruptor
           owensensis OL]
 gi|311775010|gb|ADQ04497.1| Holliday junction DNA helicase RuvB [Caldicellulosiruptor
           owensensis OL]
          Length = 338

 Score =  345 bits (885), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 166/321 (51%), Positives = 225/321 (70%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           LL    S ED     LRP+TLE++ GQ +    +K+FIEAAK R E LDHVL  GPPGLG
Sbjct: 4   LLDNKFSVEDVHEESLRPKTLEDYIGQQKVKEKVKIFIEAAKKRKEPLDHVLLYGPPGLG 63

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTTLA ++A E+GV+ + TSGP I +AGDL A+LTN+ + ++LFIDEIHRL+  +EE+LY
Sbjct: 64  KTTLANIIANEMGVDIKVTSGPAIERAGDLVAILTNIGENNILFIDEIHRLNRTIEEVLY 123

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           PAMED ++D+++G+GPSA+++++ L  FTLI ATTR GLL++PL+DRFGI  RL++Y +E
Sbjct: 124 PAMEDKKVDIVIGKGPSAKTIRLTLPPFTLIGATTRAGLLSSPLRDRFGIIERLDYYTVE 183

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +L  IV R A +    +  EA  EIA RSRGTPR+A RLLRR+RD+A V +  +IT E+A
Sbjct: 184 ELSQIVMRSASILKCDIEKEACIEIAKRSRGTPRVANRLLRRLRDYAMVKYTGSITYEVA 243

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
              L    +D+ G D +D   L  I   F GGPVG+ TI+A + E    IED+ EPY+IQ
Sbjct: 244 KNGLEMFEVDEYGLDLVDRNILEAIVYKFSGGPVGLSTIAAAIGEDEGTIEDIYEPYLIQ 303

Query: 307 QGFIQRTPRGRLLMPIAWQHL 327
           +GF+ +T RGR+    A  H+
Sbjct: 304 EGFLVKTARGRVATQKAINHI 324


>gi|320108574|ref|YP_004184164.1| Holliday junction DNA helicase RuvB [Terriglobus saanensis SP1PR4]
 gi|319927095|gb|ADV84170.1| Holliday junction DNA helicase RuvB [Terriglobus saanensis SP1PR4]
          Length = 355

 Score =  345 bits (885), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 180/329 (54%), Positives = 241/329 (73%), Gaps = 1/329 (0%)

Query: 7   LLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           ++S + + +DA   L LRP  L EF GQ +A   L + +EAAKAR EALDHVL  GPPGL
Sbjct: 23  IVSASTTDDDAAFELKLRPHHLREFIGQEKAKEQLAIALEAAKARGEALDHVLLFGPPGL 82

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLA ++A ELGV ++ TSGP +   GDL A+LTNL +R VLF+DEIHRL  ++EE L
Sbjct: 83  GKTTLATIIANELGVGYQQTSGPALQIQGDLTAILTNLRERQVLFLDEIHRLQPVLEEKL 142

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           Y A+ED+QLD+++G+GPSAR+  + +  FT +AATTR GLL++PL+ RFGI +RL FY  
Sbjct: 143 YTALEDYQLDIIIGQGPSARTHVMEIRPFTFVAATTRPGLLSSPLRSRFGILLRLEFYTD 202

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           ++L+ IV+R A++ G+ +  + A EIAMRSRGTPRIA RLLRRVRDFAEV    TI RE 
Sbjct: 203 DELRYIVERSAEVIGVTIDQDGAAEIAMRSRGTPRIANRLLRRVRDFAEVRANGTIDRET 262

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           A  AL  L +D  GFD+LD R L  I   + GGPVG+ T++A L+E  DA+E++ EP++I
Sbjct: 263 AQKALAMLEVDAHGFDELDRRLLRTIIEKYDGGPVGLNTLAAALAEEEDALEEVYEPFLI 322

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           Q GF+ RTPRGR+   +A++HLGI++P +
Sbjct: 323 QIGFLDRTPRGRVATRLAYEHLGIEMPRK 351


>gi|329767085|ref|ZP_08258613.1| Holliday junction ATP-dependent DNA helicase ruvB [Gemella
           haemolysans M341]
 gi|328837810|gb|EGF87435.1| Holliday junction ATP-dependent DNA helicase ruvB [Gemella
           haemolysans M341]
          Length = 333

 Score =  345 bits (885), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 172/329 (52%), Positives = 232/329 (70%), Gaps = 1/329 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M DR    S+N  +E  + SL RP+ L ++ GQ +   NLK+FIEAAK R E LDH L  
Sbjct: 1   MEDRMVSTSQNFGEEREEQSL-RPKFLSQYIGQEQIKRNLKIFIEAAKLRGEVLDHCLLY 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A E+ V  + TSGP I K+GDLAA+LT+LE  DVLFIDEIHR+S  
Sbjct: 60  GPPGLGKTTLATIIANEMEVGIKYTSGPAIEKSGDLAAILTSLEPGDVLFIDEIHRISRS 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EEILY AMEDF LD+++G+G  +RS++I L  FTL+ ATTR G LT PL+DRFG+  RL
Sbjct: 120 IEEILYSAMEDFYLDIVIGKGEESRSIRIELPPFTLVGATTRAGALTAPLRDRFGVHCRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY I +L+ I++R + +    + +E++ EIAMRSRGTPRIA RLL+RVRDFA+V +   
Sbjct: 180 EFYTISELQNIIERTSDIFECDIDEESSYEIAMRSRGTPRIANRLLKRVRDFAQVKNDGV 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I +++A  +L  L +D  G D +D + L  + + + G  VG+ETI+  + E    IED+ 
Sbjct: 240 IAKDLAVESLDLLQVDAKGLDNIDYKILECLIKRYDGRAVGLETIAVTIGEESITIEDVY 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           EPY++++GFI+RTPRGR   P A+QHLGI
Sbjct: 300 EPYLVKEGFIERTPRGRRATPKAYQHLGI 328


>gi|188995346|ref|YP_001929598.1| Holliday junction DNA helicase RuvB [Porphyromonas gingivalis ATCC
           33277]
 gi|188595026|dbj|BAG34001.1| holliday junction DNA helicase RuvB [Porphyromonas gingivalis ATCC
           33277]
          Length = 364

 Score =  345 bits (885), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 172/314 (54%), Positives = 227/314 (72%), Gaps = 1/314 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP T + F+GQ +   NL +F+ AA+ R EALDH L  GPPGLGKTTL+ ++A ELGV 
Sbjct: 46  LRPLTFDSFSGQDKVVENLSIFVAAARLRGEALDHTLLHGPPGLGKTTLSNIIANELGVG 105

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGPV+ K GDLA LLT+LE  DVLFIDEIHRLS +VEE LY AMED+++D+M+ +G
Sbjct: 106 LKITSGPVLDKPGDLAGLLTSLESNDVLFIDEIHRLSPLVEEYLYSAMEDYRIDIMLDKG 165

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSARS++INLS FTL+ ATTR GLLT PL+ RFGI + L +Y++  +  IV+R A++  +
Sbjct: 166 PSARSIQINLSPFTLVGATTRSGLLTAPLRARFGINLHLEYYDVHTITGIVERSARILEV 225

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
           + + +AA EIA RSRGTPRIA  LLRRVRDFA+V  +  I + IA  AL  L ID+ G D
Sbjct: 226 SCSHDAAIEIAGRSRGTPRIANALLRRVRDFAQVKGSGAIDKPIACYALEALNIDRYGLD 285

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  I   F GGPVG+ TI+  L E    IE++ EP++I++GF++RTPRGR +  
Sbjct: 286 NVDHKLLATIIDKFAGGPVGLSTIATALGEDPGTIEEVYEPFLIKEGFLKRTPRGREVTE 345

Query: 322 IAWQHLGIDI-PHR 334
           +A+ HLG +  PHR
Sbjct: 346 LAYTHLGRNPRPHR 359


>gi|297245655|ref|ZP_06929520.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A8796]
 gi|297177306|gb|EFH36558.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A8796]
          Length = 334

 Score =  345 bits (885), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 167/324 (51%), Positives = 232/324 (71%), Gaps = 1/324 (0%)

Query: 5   EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E ++ +++  E+ D  L LRP  L ++ GQ    SNL+VFI+AAK R E LDHVL  GPP
Sbjct: 3   ERMVDQSMHSEEIDFELSLRPTRLRQYIGQNSIKSNLEVFIKAAKLRHEPLDHVLLFGPP 62

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTL+ ++A E+ VN R+ SGP + + GDLAA+L+ L+  DVLFIDEIHRLS +VEE
Sbjct: 63  GLGKTTLSNIIANEMEVNIRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSVVEE 122

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LYPAMEDF LD+++G+G  ARS++I+L  FTL+ ATTR G LT PL+DRFG+ +RL +Y
Sbjct: 123 VLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATTRAGSLTGPLRDRFGVHLRLEYY 182

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
              DLK I+ R A++ G  + +E+A E+A RSRGTPR+A RLL+RVRDF +V   + I  
Sbjct: 183 NESDLKEIIIRTAEVLGTGIDEESAIELAKRSRGTPRVANRLLKRVRDFQQVNEDEQIYI 242

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           E    AL  L +D+ G D +D + +  I + + GGPVG++TI+  + E R  IED+ EP+
Sbjct: 243 ETTKHALGLLQVDQHGLDYIDHKMMNCIIKQYNGGPVGLDTIAVTIGEERITIEDVYEPF 302

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHL 327
           +IQ+GF++RTPRGR   P+A++H 
Sbjct: 303 LIQKGFLERTPRGRKATPLAYEHF 326


>gi|78777875|ref|YP_394190.1| Holliday junction DNA helicase B [Sulfurimonas denitrificans DSM
           1251]
 gi|97190419|sp|Q30PX6|RUVB_SULDN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|78498415|gb|ABB44955.1| Holliday junction DNA helicase subunit RuvB [Sulfurimonas
           denitrificans DSM 1251]
          Length = 337

 Score =  345 bits (885), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 172/331 (51%), Positives = 234/331 (70%), Gaps = 2/331 (0%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M R   + R  S+E  +++L RP    E+ GQ +   NL VFIEA+K RAEALDHVLF G
Sbjct: 1   MQRLVEIERFDSEESVEVTL-RPSAWNEYIGQEQIKKNLGVFIEASKKRAEALDHVLFYG 59

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+  N + T+ P+I K+GDLAA+LTNLE+ DVLFIDEIHRLS  V
Sbjct: 60  PPGLGKTTLALIIANEMNANIKVTAAPMIEKSGDLAAILTNLEEGDVLFIDEIHRLSPAV 119

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILY +MEDF++D+++G GP+A+++KI+L RFTLI ATTR G+L+NPL+DRFG+  R+ 
Sbjct: 120 EEILYSSMEDFRIDIIIGSGPAAQTLKIDLPRFTLIGATTRAGMLSNPLRDRFGMNFRMQ 179

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY  E+L  I+ + +      + DEA  EIA RSRGTPRIA RLLRRVRDFA+VA+ K I
Sbjct: 180 FYSPEELSKIISQASNKLNKKIADEACSEIAKRSRGTPRIALRLLRRVRDFADVANEKDI 239

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
               A  AL  L I+  GFD++D++ L ++     G  +G+ TI+A LSE    +ED++E
Sbjct: 240 LHSRAQYALDELGINSYGFDEMDIKLLNLLV-GANGRAMGLSTIAAALSEDEGTVEDVLE 298

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           PY+I  G+++RT +GR   P  ++ L + +P
Sbjct: 299 PYLIANGYLERTAKGRKATPSTYKILNVTMP 329


>gi|300087843|ref|YP_003758365.1| Holliday junction DNA helicase RuvB [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527576|gb|ADJ26044.1| Holliday junction DNA helicase RuvB [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 346

 Score =  345 bits (885), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 167/328 (50%), Positives = 235/328 (71%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M+   + S++V++E+   + LRP++L++F GQ     NL + +EAA+ R EALDHVL  G
Sbjct: 6   MNERIISSQSVNEEEGAENSLRPKSLDDFIGQERLRDNLGITMEAARGRGEALDHVLLYG 65

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++AR++GVN R T+GP + + GDLAA+LT+L+  DVLFIDEIHRL   V
Sbjct: 66  PPGLGKTTLAHIIARDMGVNIRITAGPAVERPGDLAAILTSLQSNDVLFIDEIHRLGRTV 125

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILYPAMEDF LD+++G+GP A++++I L  FTLI ATTR  +L++PL+DRFG   RL 
Sbjct: 126 EEILYPAMEDFALDIVIGKGPGAKNLRIKLPHFTLIGATTRYAMLSSPLRDRFGSVYRLE 185

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y   ++++I++R A++  +   D    EIA R+RGTPR+A RLL+RVRD+A+V    +I
Sbjct: 186 YYNDSEIESIIRRSARILDVKADDAGLREIACRARGTPRVANRLLKRVRDYAQVKENGSI 245

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
             +IA AAL RL +D +G D +D   L  I   F GGPVG+ET++A +SE  D I D+ E
Sbjct: 246 DADIAGAALGRLEVDGVGLDSIDHHLLRTIIEKFSGGPVGLETLAAAISEDSDTIMDIYE 305

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           PY++Q GF++RT RGR+    A+ HL I
Sbjct: 306 PYLMQLGFLERTARGRVATRAAYDHLQI 333


>gi|239637554|ref|ZP_04678526.1| holliday junction DNA helicase RuvB [Staphylococcus warneri L37603]
 gi|239596772|gb|EEQ79297.1| holliday junction DNA helicase RuvB [Staphylococcus warneri L37603]
          Length = 334

 Score =  345 bits (885), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 168/325 (51%), Positives = 230/325 (70%), Gaps = 1/325 (0%)

Query: 5   EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E ++ ++   E++D  L LRP  L+++ GQ    SNL+VFI+AAK R E LDHVL  GPP
Sbjct: 3   ERMVDQSAHNEESDFELSLRPTKLKQYIGQSSIKSNLEVFIKAAKLREEPLDHVLLYGPP 62

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTL+ ++A E+ VN R+ SGP + + GDLAA+L+ L+  DVLFIDEIHRLS +VEE
Sbjct: 63  GLGKTTLSNIIANEMDVNIRTVSGPSLERPGDLAAILSGLKPGDVLFIDEIHRLSSVVEE 122

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LYPAMEDF LD+++G+G  ARS++I+L  FTL+ ATTR G LT PL+DRFG+ +RL +Y
Sbjct: 123 VLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATTRAGSLTGPLRDRFGVHLRLEYY 182

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
              DLK I+ R A++ G  + +E+A E+A RSRGTPR+A RLL+RVRDF +V     I  
Sbjct: 183 NEADLKEIIIRTAEVLGTDIDEESAIELAKRSRGTPRVANRLLKRVRDFQQVNEDDQIYI 242

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           E    AL  L +D  G D +D + +  I   + GGPVG++TI+  + E R  IED+ EP+
Sbjct: 243 ETTKRALKLLQVDDYGLDYIDHKMMNCILNQYKGGPVGLDTIAVSIGEERITIEDVYEPF 302

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLG 328
           +IQ+GF++RTPRGR   P+A +H G
Sbjct: 303 LIQKGFLERTPRGRKATPLAHEHFG 327


>gi|332364921|gb|EGJ42689.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           sanguinis SK355]
          Length = 332

 Score =  345 bits (885), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 167/309 (54%), Positives = 226/309 (73%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L+E+ GQ +  + LK+FIEAAK R EALDH L  GPPGLGKTT+A V+A ELGVN
Sbjct: 20  LRPQYLQEYIGQDKVKNQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANELGVN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGPVI K+GDL A+L +LE  DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G
Sbjct: 80  LKQTSGPVIEKSGDLVAILNDLEPGDVLFIDEIHRLPMAVEEVLYSAMEDFYIDIMIGSG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            ++RSV ++L  FTLI ATTR G+L+NPL+ RFGI   + +YE  DL  IV+R A++  +
Sbjct: 140 ETSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYEAGDLTEIVERTAEIFEM 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T EAA ++A+RSRGTPRIA RLL+RVRD+A++     I  +I D AL  L +D+ G D
Sbjct: 200 DITHEAAKDLALRSRGTPRIANRLLKRVRDYAQIVGNGLIDDKITDQALSMLDVDQEGLD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GF+ RT  GR+   
Sbjct: 260 YVDQKILKTMIEVYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFVMRTRTGRVATR 319

Query: 322 IAWQHLGID 330
            A++HLG +
Sbjct: 320 KAYEHLGYE 328


>gi|157150805|ref|YP_001449430.1| Holliday junction DNA helicase RuvB [Streptococcus gordonii str.
           Challis substr. CH1]
 gi|262281747|ref|ZP_06059516.1| Holliday junction DNA helicase RuvB [Streptococcus sp. 2_1_36FAA]
 gi|189046055|sp|A8AUH0|RUVB_STRGC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|157075599|gb|ABV10282.1| Holliday junction DNA helicase RuvB [Streptococcus gordonii str.
           Challis substr. CH1]
 gi|262262201|gb|EEY80898.1| Holliday junction DNA helicase RuvB [Streptococcus sp. 2_1_36FAA]
          Length = 332

 Score =  345 bits (885), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 170/309 (55%), Positives = 223/309 (72%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L+E+ GQ +  + LK+FIEAAK R EALDH L  GPPGLGKTT+A V+A ELGVN
Sbjct: 20  LRPQYLQEYIGQDKVKNQLKIFIEAAKLRDEALDHALLFGPPGLGKTTMAFVIANELGVN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGPVI KAGDL A+L +LE  DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G
Sbjct: 80  IKQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMAVEEVLYSAMEDFYIDIMIGSG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            + RSV ++L  FTLI ATTR G+L+NPL+ RFGI   + +YE  DL  IV+R A++  +
Sbjct: 140 DANRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYEEADLTEIVERTAEIFEM 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T EAA E+A+RSRGTPRIA RLL+RVRD+A++     I   I D AL  L +D  G D
Sbjct: 200 DITHEAAKELALRSRGTPRIANRLLKRVRDYAQIMGNGLIDETITDQALSMLDVDHEGLD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GFI RT  GR+   
Sbjct: 260 YVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRTGRVATR 319

Query: 322 IAWQHLGID 330
            A++HLG +
Sbjct: 320 KAYEHLGYE 328


>gi|282878862|ref|ZP_06287629.1| Holliday junction DNA helicase RuvB [Prevotella buccalis ATCC
           35310]
 gi|281299070|gb|EFA91472.1| Holliday junction DNA helicase RuvB [Prevotella buccalis ATCC
           35310]
          Length = 344

 Score =  345 bits (885), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 168/310 (54%), Positives = 225/310 (72%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP    +F+GQ +   NL++F+EAAK R E LDH L  GPPGLGKTTL+ ++A ELGV 
Sbjct: 23  LRPLKFNDFSGQPKVVENLQIFVEAAKYRGEPLDHTLLHGPPGLGKTTLSNIIANELGVG 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS +VEE LY AMED+++D+M+ +G
Sbjct: 83  FKLTSGPVLDKPGDLAGILTSLEPNDVLFIDEIHRLSPVVEEYLYSAMEDYRIDIMIDKG 142

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSARS++I+L+ FTL+ ATTR GLLT PL+ RFGI + L +Y  E L+ I++R A +  +
Sbjct: 143 PSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGINMHLEYYAPETLQKIIRRSANILNV 202

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + ++AA EIA RSRGTPRIA  LLRRVRDFA+V    +I   IA  AL  L ID+ G D
Sbjct: 203 PIDEDAAYEIARRSRGTPRIANALLRRVRDFAQVKGNGSINTRIAQFALQALNIDQYGLD 262

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           ++D + L  I   F GGPVG+ TI+  + E    +E++ EP++I +GFI+RTPRGR+   
Sbjct: 263 EIDNKILLTIIDKFRGGPVGLSTIATAIGEDTGTVEEVYEPFLIMEGFIKRTPRGRMATH 322

Query: 322 IAWQHLGIDI 331
           +A++HLG D+
Sbjct: 323 LAYEHLGRDL 332


>gi|282852796|ref|ZP_06262138.1| Holliday junction DNA helicase RuvB [Lactobacillus gasseri 224-1]
 gi|282556538|gb|EFB62158.1| Holliday junction DNA helicase RuvB [Lactobacillus gasseri 224-1]
          Length = 336

 Score =  345 bits (885), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 175/329 (53%), Positives = 230/329 (69%), Gaps = 1/329 (0%)

Query: 1   MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M D E ++    ++ED  I L LRP+ L ++ GQ +  S +K++I+AAK R EALDHVL 
Sbjct: 1   MNDEERIIGAESNEEDETIELSLRPQLLAQYIGQDKVKSEMKIYIKAAKQRDEALDHVLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA V+A E+GV+ +STSGP I KAGDL ALL+ L   DVLFIDEIHRL+ 
Sbjct: 61  YGPPGLGKTTLAFVIANEMGVHLKSTSGPAIEKAGDLVALLSELNPGDVLFIDEIHRLAK 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEE+LY AMEDF +D++VGEG +  +V + L  FTLI ATTR G L+ PL+DRFGI   
Sbjct: 121 PVEEVLYSAMEDFYIDIVVGEGQTTHAVHVPLPPFTLIGATTRAGQLSAPLRDRFGIIEH 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           + +Y I+DL+ I+QR + +    +  EAA E+A RSRGTPR+A RLL+RVRDFAEV   +
Sbjct: 181 MQYYSIDDLEKIIQRSSVVFNTKIDPEAAIELARRSRGTPRVANRLLKRVRDFAEVKGEE 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I+      +L  L +D  G DQ D + L M+  N+GGGPVGI+TI+A + E  D IE++
Sbjct: 241 AISLATTKHSLHLLEVDDEGLDQTDRKLLRMMIENYGGGPVGIKTIAANVGEDTDTIEEV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
            EPY++Q+GFI RTPRGR +   A+  LG
Sbjct: 301 YEPYLLQKGFITRTPRGRSVTQKAYLQLG 329


>gi|319651694|ref|ZP_08005821.1| Holliday junction DNA helicase B [Bacillus sp. 2_A_57_CT2]
 gi|317396761|gb|EFV77472.1| Holliday junction DNA helicase B [Bacillus sp. 2_A_57_CT2]
          Length = 333

 Score =  345 bits (884), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 169/311 (54%), Positives = 227/311 (72%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+TL+++ GQ +   NL++FI+AA+ R E LDHVL  GPPGLGKTTLA ++A E+GVN
Sbjct: 21  LRPQTLKQYIGQDKVKQNLEIFIKAARIREETLDHVLLYGPPGLGKTTLAAIIANEMGVN 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R+T+GP I + GDLAA+LT LE  DVLFIDEIHRL   +EE+LYPAMEDF LD+++G+G
Sbjct: 81  IRTTAGPAIERPGDLAAILTALEPGDVLFIDEIHRLPRSIEEVLYPAMEDFCLDIVIGKG 140

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSARSV+++L  FTL+ ATTR G L+ PL+DRFG+  RL +Y  E L  IV R A++   
Sbjct: 141 PSARSVRLDLPPFTLVGATTRAGSLSAPLRDRFGVLSRLEYYSEEQLTDIVVRTAEVLDT 200

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  +AA E+A RSRGTPRIA RLLRRVRDFA+V     +   +A  AL  L +D++G D
Sbjct: 201 GIDLKAANEVARRSRGTPRIANRLLRRVRDFAQVKSDGQVEETLAKEALELLQVDRLGLD 260

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  I   F GGPVG+ETI+A + E    IED+ EPY++Q GF+QRTPRGR++  
Sbjct: 261 HIDHKLLRGIIEKFRGGPVGLETIAATIGEEAHTIEDVYEPYLLQIGFLQRTPRGRIVTD 320

Query: 322 IAWQHLGIDIP 332
           + ++H  +++P
Sbjct: 321 LVYRHFQMEVP 331


>gi|332668034|ref|YP_004450822.1| Holliday junction ATP-dependent DNA helicase ruvB
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332336848|gb|AEE53949.1| Holliday junction ATP-dependent DNA helicase ruvB
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 342

 Score =  345 bits (884), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 171/311 (54%), Positives = 221/311 (71%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ LEEF+GQ     NLKVFI AAK R +ALDHVL  GPPGLGKTTL+ ++A EL   
Sbjct: 24  LRPKALEEFSGQPRIVDNLKVFITAAKQRGDALDHVLLHGPPGLGKTTLSHIIALELETG 83

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + +SGPV+ K GDLA LLTNL   DVLFIDEIHRL+ +VEE LY AMED+++D+M+  G
Sbjct: 84  LKMSSGPVLEKPGDLAGLLTNLNSGDVLFIDEIHRLNTVVEEYLYSAMEDYRIDIMIDSG 143

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS++I L+ FTL+ ATTR+GLLT P++ RFGI   L++Y++  LK I+ R A + GL
Sbjct: 144 PNARSIQITLNPFTLVGATTRMGLLTAPMRARFGINCHLDYYDVLTLKKIIHRSADILGL 203

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + +E A EIA RSRGTPRIA  LLRRVRDFA+V     I   IA  AL  L +D+ G D
Sbjct: 204 EIFEEGASEIARRSRGTPRIANALLRRVRDFAQVKGDGRIDEAIAKYALEALNVDEYGLD 263

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           ++D + L+ I   F GGPVGI TI+  + E    IE++ EP++I +GF+QRTPRGR    
Sbjct: 264 EMDNKILSTIIHKFKGGPVGISTIATAIGEEAGTIEEVHEPFLIMEGFLQRTPRGREATE 323

Query: 322 IAWQHLGIDIP 332
            A++HLG+  P
Sbjct: 324 KAYRHLGVVPP 334


>gi|319892694|ref|YP_004149569.1| Holliday junction DNA helicase RuvB [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317162390|gb|ADV05933.1| Holliday junction DNA helicase RuvB [Staphylococcus
           pseudintermedius HKU10-03]
 gi|323464268|gb|ADX76421.1| Holliday junction DNA helicase RuvB [Staphylococcus
           pseudintermedius ED99]
          Length = 332

 Score =  345 bits (884), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 172/332 (51%), Positives = 230/332 (69%), Gaps = 1/332 (0%)

Query: 2   MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MDR+ ++  +   ++    L LRP  L ++ GQ    SNL VFI+AAK R E LDHVL  
Sbjct: 1   MDRDRMMDGHEQVDEHTFELSLRPERLRQYIGQSTIKSNLDVFIQAAKIREEPLDHVLLF 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTL+ ++A E+ VN R+ SGP I + GDLAA+LT L+  DVLFIDEIHRLS +
Sbjct: 61  GPPGLGKTTLSHIIANEMDVNLRTVSGPSIERPGDLAAILTALQPGDVLFIDEIHRLSSV 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDF LD++VG+G  ARS++I+L  FTL+ ATTR G LT+PL+DRFG+ +RL
Sbjct: 121 VEEVLYPAMEDFFLDIIVGKGDEARSIRIDLPPFTLVGATTRAGSLTSPLRDRFGVHLRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y  E+L  I+ R A++ G A+ +E+A EIA RSRGTPRIA RLL+R+RDF +V     
Sbjct: 181 EYYTEEELTQIIIRTAEVLGTAIDEESAFEIAKRSRGTPRIANRLLKRIRDFQQVKQDDM 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I  E    AL  L +D  G D +D + +  I   + GGPVG++TI+  + E R  IED+ 
Sbjct: 241 IYIETTKHALKLLQVDDEGLDYIDHKMMACIIEQYRGGPVGLDTIAVSIGEERVTIEDVY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EP++IQ+GF++RTPRGR   P A++H     P
Sbjct: 301 EPFLIQKGFLERTPRGRKATPYAYEHFKYTSP 332


>gi|295398600|ref|ZP_06808632.1| crossover junction ATP-dependent DNA helicase RuvB [Aerococcus
           viridans ATCC 11563]
 gi|294973201|gb|EFG48996.1| crossover junction ATP-dependent DNA helicase RuvB [Aerococcus
           viridans ATCC 11563]
          Length = 353

 Score =  345 bits (884), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 173/309 (55%), Positives = 220/309 (71%), Gaps = 1/309 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E+ GQ E    L ++I+AA+ R EALDHVL  GPPGLGKTTLA ++A E+GVN
Sbjct: 39  LRPKFLREYIGQAELKEELAIYIQAAENRDEALDHVLLYGPPGLGKTTLANIIANEMGVN 98

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            ++TSGP I K GDL  LL  L   DVLFIDEIHRL  +VEE+LY AMED+Q+D++VG+ 
Sbjct: 99  IQTTSGPAIEKTGDLLVLLNELSAGDVLFIDEIHRLPRVVEEMLYSAMEDYQVDIIVGQD 158

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
             A  V   L  FTLI ATTR G L++PL+ RFGI   L +Y +++L TIV+R A+L  +
Sbjct: 159 EGAHPVHFPLPPFTLIGATTRPGALSSPLRHRFGIVQHLRYYTVDELATIVERTARLFEV 218

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK-TITREIADAALLRLAIDKMGF 260
            + D+AA EI MRSRGTPRIA RLL+RVRDFA+V H    I   I D AL  L +D+ G 
Sbjct: 219 PIKDQAAKEIGMRSRGTPRIANRLLKRVRDFAQVYHEDGLIDDPITDKALSILKVDQAGL 278

Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320
           D+ D + L +I R +GGGPVG+ TI+A +SE    IED+ EP++IQ GF+QRTPRGRL+ 
Sbjct: 279 DETDRKILDVIIRYYGGGPVGLSTIAANISEEATTIEDMYEPFLIQNGFLQRTPRGRLVT 338

Query: 321 PIAWQHLGI 329
           P A+ HLGI
Sbjct: 339 PKAYDHLGI 347


>gi|268318975|ref|YP_003292631.1| Holliday junction ATP-dependent DNA helicase ruvB [Lactobacillus
           johnsonii FI9785]
 gi|262397350|emb|CAX66364.1| Holliday junction ATP-dependent DNA helicase ruvB [Lactobacillus
           johnsonii FI9785]
          Length = 336

 Score =  345 bits (884), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 175/329 (53%), Positives = 230/329 (69%), Gaps = 1/329 (0%)

Query: 1   MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M + E ++    S+ED  I L LRP+ L ++ GQ +  S +K++I+AAK R EALDHVL 
Sbjct: 1   MNEEERIIGAESSEEDETIELSLRPQLLAQYIGQDKVKSEMKIYIKAAKQRDEALDHVLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA V+A E+GV+ +STSGP I KAGDL ALL+ L   DVLFIDEIHRL+ 
Sbjct: 61  YGPPGLGKTTLAFVIANEMGVHLKSTSGPAIEKAGDLVALLSELNPGDVLFIDEIHRLAK 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEE+LY AMEDF +D++VGEG +  +V + L  FTLI ATTR G L+ PL+DRFGI   
Sbjct: 121 PVEEVLYSAMEDFYIDIVVGEGQTTHAVHVPLPPFTLIGATTRAGQLSAPLRDRFGIIEH 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           + +Y +EDL+ I+QR + +    +  EAA E+A RSRGTPR+A RLL+RVRDFAEV   +
Sbjct: 181 MQYYSVEDLEKIIQRSSVVFNTKIDPEAAIELARRSRGTPRVANRLLKRVRDFAEVKGEE 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I+      +L  L +D  G DQ D + L M+  N+GGGPVGI+TI+A + E  D IE++
Sbjct: 241 AISLVTTKHSLHLLEVDDEGLDQTDRKLLRMMIENYGGGPVGIKTIAANVGEDTDTIEEV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
            EPY++Q+GFI RTPRGR +   A+  LG
Sbjct: 301 YEPYLLQKGFITRTPRGRSVTQKAYLQLG 329


>gi|319400967|gb|EFV89186.1| holliday junction DNA helicase RuvB [Staphylococcus epidermidis
           FRI909]
          Length = 334

 Score =  345 bits (884), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 169/328 (51%), Positives = 230/328 (70%), Gaps = 2/328 (0%)

Query: 2   MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD+  ++ +    ED D+ L LRP  L+++ GQ    SNL+VFI+AAK R E LDHVL  
Sbjct: 1   MDKR-MVDQEFHNEDTDLELSLRPTQLKQYIGQSSIKSNLEVFIKAAKLRQEPLDHVLLF 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTL+ ++A E+ VN R+ SGP + + GDLAA+L+ L+  DVLFIDEIHRLS +
Sbjct: 60  GPPGLGKTTLSNIIANEMNVNIRTISGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSV 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDF LD+++G+G  ARS++I+L  FTL+ ATTR G LT PL+DRFG+ +RL
Sbjct: 120 VEEVLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATTRAGSLTGPLRDRFGVHLRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y   DLK I+ R A++ G  +  E+A E+A RSRGTPRIA RLL+RVRDF +V     
Sbjct: 180 EYYNENDLKEIITRTAEVLGTDIDKESALELARRSRGTPRIANRLLKRVRDFQQVNEDDQ 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I  E    AL  L +D+ G D +D + +  I   + GGPVG++TI+  + E R  IED+ 
Sbjct: 240 IYIETTKRALQLLQVDQQGLDYIDHKMMNCIINQYNGGPVGLDTIAVSIGEERVTIEDVY 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
           EP++IQ+GF++RTPRGR    +A++H  
Sbjct: 300 EPFLIQKGFLERTPRGRKATALAFEHFN 327


>gi|171778365|ref|ZP_02919544.1| hypothetical protein STRINF_00395 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282896|gb|EDT48320.1| hypothetical protein STRINF_00395 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 332

 Score =  345 bits (884), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 167/307 (54%), Positives = 222/307 (72%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L+E+ GQ +  + LK+FIEAAK R E+LDHVL  GPPGLGKTT+A V+A ELGVN
Sbjct: 20  LRPQYLKEYIGQDKVKNQLKIFIEAAKLRDESLDHVLLFGPPGLGKTTMAFVIANELGVN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGP I KAGDL A+L +LE  DVLFIDEIHR+ + VEE+LY AMEDF +D+M+G G
Sbjct: 80  LKQTSGPAIEKAGDLVAILNDLEPGDVLFIDEIHRMPMAVEEVLYSAMEDFYIDIMIGNG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            ++RSV ++L  FTLI ATTR G+L+NPL+ RFGI   + +Y ++DL  IV+R A +  +
Sbjct: 140 ETSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYAVDDLTEIVERTADIFEM 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  EAA E+A RSRGTPRIA RLL+RVRD+A++     IT++I D AL  L +D  G D
Sbjct: 200 EIVHEAAQELARRSRGTPRIANRLLKRVRDYAQIMGDGIITKDITDKALTMLDVDHEGLD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   + GGPVG+ T+S  ++E RD +ED+ EPY+IQ+GFI RT  GR+   
Sbjct: 260 YIDQKILRTMIEVYNGGPVGLGTLSVNIAEERDTVEDMYEPYLIQKGFIMRTRTGRVATA 319

Query: 322 IAWQHLG 328
            A+ HLG
Sbjct: 320 KAYDHLG 326


>gi|34540304|ref|NP_904783.1| Holliday junction DNA helicase RuvB [Porphyromonas gingivalis W83]
 gi|44888376|sp|Q7MWU9|RUVB_PORGI RecName: Full=Holliday junction DNA helicase ruvB
 gi|34396616|gb|AAQ65682.1| Holliday junction DNA helicase RuvB [Porphyromonas gingivalis W83]
          Length = 343

 Score =  345 bits (884), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 171/314 (54%), Positives = 227/314 (72%), Gaps = 1/314 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP T + F+GQ +   NL +F+ AA+ R EALDH L  GPPGLGKTTL+ ++A ELGV 
Sbjct: 25  LRPLTFDSFSGQDKVVENLSIFVAAARLRGEALDHTLLHGPPGLGKTTLSNIIANELGVG 84

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGPV+ K GDLA LL++LE  DVLFIDEIHRLS +VEE LY AMED+++D+M+ +G
Sbjct: 85  LKITSGPVLDKPGDLAGLLSSLESNDVLFIDEIHRLSPVVEEYLYSAMEDYRIDIMLDKG 144

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSARS++INLS FTL+ ATTR GLLT PL+ RFGI + L +Y++  +  IV+R A++  +
Sbjct: 145 PSARSIQINLSPFTLVGATTRSGLLTAPLRARFGINLHLEYYDVHTITGIVERSARILEV 204

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
           + + +AA EIA RSRGTPRIA  LLRRVRDFA+V  +  I + IA  AL  L ID+ G D
Sbjct: 205 SCSHDAAVEIAGRSRGTPRIANALLRRVRDFAQVKGSGAIDKPIACYALEALNIDRYGLD 264

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  I   F GGPVG+ TI+  L E    IE++ EP++I++GF++RTPRGR +  
Sbjct: 265 NVDHKLLATIIDKFAGGPVGLSTIATALGEDPGTIEEVYEPFLIKEGFLKRTPRGREVTE 324

Query: 322 IAWQHLGIDI-PHR 334
           +A+ HLG +  PHR
Sbjct: 325 LAYTHLGRNPRPHR 338


>gi|304385247|ref|ZP_07367592.1| crossover junction ATP-dependent DNA helicase RuvB [Pediococcus
           acidilactici DSM 20284]
 gi|304328454|gb|EFL95675.1| crossover junction ATP-dependent DNA helicase RuvB [Pediococcus
           acidilactici DSM 20284]
          Length = 337

 Score =  345 bits (884), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 174/331 (52%), Positives = 229/331 (69%), Gaps = 2/331 (0%)

Query: 2   MDREGLLSRNV--SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           MD E + S  V  +QE+A+   LRP+ L ++ GQ +    L V+IEAAK R EALDHVL 
Sbjct: 1   MDDERITSSAVQGAQEEANEQSLRPQNLRQYIGQAQIKHELSVYIEAAKKREEALDHVLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA V+A E+ V  R+TSGP I K GDL ALL  L+  D+LFIDEIHRL  
Sbjct: 61  YGPPGLGKTTLAMVIANEMAVQIRTTSGPAIEKPGDLVALLNELQPGDILFIDEIHRLPK 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LY AMEDF +D++VG+GP+A  +   L  FTLI ATTR GLL+ PL+DRFGI   
Sbjct: 121 VVEEMLYSAMEDFFVDIVVGQGPTAHPIHFPLPPFTLIGATTRAGLLSAPLRDRFGIVEH 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           +N+Y  +DL  IV+R A++    + D+ A EIA RSRGTPRI+ RLL+RVRDFAEV +  
Sbjct: 181 MNYYTEDDLANIVKRSAEIFKTNIDDQGAHEIARRSRGTPRISNRLLKRVRDFAEVENDA 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I R +   +L  L +D  G DQ D + LT +   +GGGPVG+ TI+A + E  D I ++
Sbjct: 241 HIDRTLVRTSLKLLQVDDRGLDQTDKKVLTTMIELYGGGPVGLTTIAANIGEEPDTISEM 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
            EPY++Q GF++RTPRGR++   A+ HLG++
Sbjct: 301 YEPYLLQIGFLKRTPRGRMVTERAYAHLGLE 331


>gi|306828820|ref|ZP_07462012.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           mitis ATCC 6249]
 gi|304428998|gb|EFM32086.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           mitis ATCC 6249]
          Length = 332

 Score =  345 bits (884), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 171/313 (54%), Positives = 221/313 (70%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E+ GQ +    L++FIEAAK R EALDHVL  GPPGLGKTT+A V+A ELGVN
Sbjct: 20  LRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANELGVN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGPVI KAGDL A+L +LE  DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G
Sbjct: 80  LKQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
             +RSV ++L  FTLI ATTR G+L+NPL+ RFGI   + +Y   DL  IV+R A +  +
Sbjct: 140 EGSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYAHADLTEIVERTADIFEM 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T EAA E+A+RSRGTPRIA RLL+RVRDFA++     I   I D AL  L +D  G D
Sbjct: 200 EITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGDGLIDDVITDKALTMLDVDHEGLD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GFI RT  GR+   
Sbjct: 260 YVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRSGRVATA 319

Query: 322 IAWQHLGIDIPHR 334
            A++HLG D   +
Sbjct: 320 KAYEHLGYDYSEK 332


>gi|241889923|ref|ZP_04777221.1| holliday junction DNA helicase RuvB [Gemella haemolysans ATCC
           10379]
 gi|241863545|gb|EER67929.1| holliday junction DNA helicase RuvB [Gemella haemolysans ATCC
           10379]
          Length = 333

 Score =  345 bits (884), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 172/329 (52%), Positives = 232/329 (70%), Gaps = 1/329 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M DR    S+N  +E  + SL RP+ L ++ GQ +  SNLK+FIEAAK R E LDH L  
Sbjct: 1   MEDRMVSASQNFGEEREEQSL-RPKFLSQYIGQEQIKSNLKIFIEAAKLRGEVLDHCLLY 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A E+ V  + TSGP I K+GDLAA+LT+LE  DVLFIDEIHR+S  
Sbjct: 60  GPPGLGKTTLATIIANEMEVGIKYTSGPAIEKSGDLAAILTSLEPGDVLFIDEIHRISRS 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EEILY AMEDF LD+++G+G  +RS++I L  FTL+ ATTR G LT PL+DRFG+  RL
Sbjct: 120 IEEILYSAMEDFYLDIVIGKGEESRSIRIELPPFTLVGATTRAGALTAPLRDRFGVHCRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY I +L+ I++R + +    + ++++ EIAMRSRGTPRIA RLL+RVRDFA+V +   
Sbjct: 180 EFYTISELQNIIERTSDIFECDIDEQSSYEIAMRSRGTPRIANRLLKRVRDFAQVKNDGV 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I +E+A  +L  L +D  G D +D + L  + + + G  VG+ETI+  + E    IED+ 
Sbjct: 240 IAKELAVESLDLLQVDAKGLDNIDYKILECLIKRYEGRAVGLETIAVTIGEESITIEDVY 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           EPY++++GFI+RTPRGR     A+QHLGI
Sbjct: 300 EPYLVKEGFIERTPRGRRATSKAYQHLGI 328


>gi|319956008|ref|YP_004167271.1| holliday junction DNA helicase ruvb [Nitratifractor salsuginis DSM
           16511]
 gi|319418412|gb|ADV45522.1| Holliday junction DNA helicase RuvB [Nitratifractor salsuginis DSM
           16511]
          Length = 337

 Score =  345 bits (884), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 167/306 (54%), Positives = 233/306 (76%), Gaps = 5/306 (1%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP + +E+ GQ +   NL+VFI+A+  RAEALDH+LF GPPGLGKTTLA ++A E+G N
Sbjct: 20  LRPSSWDEYVGQEKIKKNLQVFIQASLKRAEALDHILFFGPPGLGKTTLANIIASEMGAN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            ++T+ P+I K+GDLAALLTN+E+ D+LFIDEIHR+S  +EEILYPAMED++LD+++G G
Sbjct: 80  IKTTAAPMIEKSGDLAALLTNIEEGDILFIDEIHRMSPAIEEILYPAMEDYRLDIIIGSG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+A++VKI+L RFTL+ ATTR G+L+NPL++RFG+  R+ FY  E+L  I+++ A   G+
Sbjct: 140 PAAQAVKIDLPRFTLVGATTRAGMLSNPLRERFGMHFRMEFYTPEELAKIIEQAADKLGI 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  +AA EIA RSRGTPRIA RLLRRVRDFAEVA    I+ E A   L +L ++ +GFD
Sbjct: 200 GIDKDAALEIARRSRGTPRIALRLLRRVRDFAEVAEEACISLETARYGLDQLGVNHIGFD 259

Query: 262 QLDLRYLTMI--ARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLL 319
           + DL+ L ++  AR   G P+G+ TI+A LSE    IE+++EPY+I  G+I+RT RGR+ 
Sbjct: 260 EQDLKLLELLISAR---GRPMGLSTIAAALSEDEGTIEEVLEPYLIANGYIERTARGRIA 316

Query: 320 MPIAWQ 325
            P +++
Sbjct: 317 TPKSYE 322


>gi|118474580|ref|YP_891667.1| Holliday junction DNA helicase RuvB [Campylobacter fetus subsp.
           fetus 82-40]
 gi|166231477|sp|A0RN84|RUVB_CAMFF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|28974219|gb|AAO64220.1| putative Holliday junction DNA helicase [Campylobacter fetus]
 gi|118413806|gb|ABK82226.1| holliday junction DNA helicase RuvB [Campylobacter fetus subsp.
           fetus 82-40]
          Length = 343

 Score =  345 bits (884), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 166/311 (53%), Positives = 231/311 (74%), Gaps = 2/311 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP T EE+ GQ +  SNLKVFI+AAK R E+LDHVLF GPPGLGKTTLA ++A E+G N
Sbjct: 20  LRPLTFEEYIGQEKIKSNLKVFIKAAKKRLESLDHVLFYGPPGLGKTTLAHIIANEMGAN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + +S P+I K+GDLAA+LTNLE+ DVLFIDEIHRLS  +EE+LY AMEDF+LD+++G G
Sbjct: 80  IKISSAPMIEKSGDLAAILTNLEEGDVLFIDEIHRLSPAIEEVLYSAMEDFRLDIIIGSG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+A+++KI++ +FTLI ATTR G+++ PL+DRFG+  RL FY   +L  I+   A   G 
Sbjct: 140 PAAQTIKIDIPKFTLIGATTRAGMISAPLRDRFGMQFRLQFYTDNELARIISIAASKLGK 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
             T EA+ EIA RSRGTPRIA RLL+R+RDFAEV+   +I+++ A ++L  L ++ +GFD
Sbjct: 200 NSTKEASLEIAKRSRGTPRIALRLLKRIRDFAEVSDENSISKDRAKSSLDSLGVNDLGFD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           ++DL+YL ++  +     +G+ TI+A LSE    +ED+IEPY++  G+I+RT +GR+L  
Sbjct: 260 EMDLKYLDILVGS--KRALGLSTIAAALSEDEGTVEDVIEPYLLSNGYIERTAKGRILSF 317

Query: 322 IAWQHLGIDIP 332
            ++   GI  P
Sbjct: 318 KSYSVFGITPP 328


>gi|331267094|ref|YP_004326724.1| holliday junction DNA helicase RuvB [Streptococcus oralis Uo5]
 gi|326683766|emb|CBZ01384.1| holliday junction DNA helicase RuvB [Streptococcus oralis Uo5]
          Length = 332

 Score =  345 bits (884), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 170/309 (55%), Positives = 220/309 (71%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E+ GQ +    L++FIEAAK R EALDHVL  GPPGLGKTT+A V+A ELGVN
Sbjct: 20  LRPKYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANELGVN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGPVI KAGDL A+L +LE  DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G
Sbjct: 80  LKQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
             +RSV ++L  FTLI ATTR G+L+NPL+ RFGI   + +Y   DL  IV+R A +  +
Sbjct: 140 EGSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYAHNDLTEIVERTADIFEM 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T EAA E+A+RSRGTPRIA RLL+RVRDFA++     I   I D AL  L +D  G D
Sbjct: 200 EITHEAAAELALRSRGTPRIANRLLKRVRDFAQIMGNGVIDDVITDKALTMLDVDHEGLD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GFI RT  GR+   
Sbjct: 260 YVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRSGRVATA 319

Query: 322 IAWQHLGID 330
            A++HLG +
Sbjct: 320 KAYEHLGYE 328


>gi|315221657|ref|ZP_07863574.1| Holliday junction DNA helicase RuvB [Streptococcus anginosus F0211]
 gi|315189233|gb|EFU22931.1| Holliday junction DNA helicase RuvB [Streptococcus anginosus F0211]
          Length = 332

 Score =  345 bits (884), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 169/309 (54%), Positives = 225/309 (72%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E+ GQ +  + LK+FIEAAK R EALDH L  GPPGLGKTT+A V+A ELGVN
Sbjct: 20  LRPQYLREYIGQDKVKNQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANELGVN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGPVI KAGDL A+L +LE  DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G
Sbjct: 80  LKQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGTG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            ++RSV ++L  FTLI ATTR G+L+NPL+ RFGI   + +YE  DL  IV+R A++  +
Sbjct: 140 EASRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYEETDLTEIVERTAEIFEM 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T EAA E+A+RSRGTPRIA RLL+RVRDFA++     I  +I D AL  L +D+ G D
Sbjct: 200 EITHEAAEELALRSRGTPRIANRLLKRVRDFAQIMGNGLIDDQITDQALTMLDVDQEGLD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   +GGGPVG+ T+S  ++E ++ +ED+ EPY+IQ+GF+ RT  GR+   
Sbjct: 260 YVDQKILKTMIEVYGGGPVGLGTLSVNIAEEQETVEDMYEPYLIQKGFVMRTRTGRVATR 319

Query: 322 IAWQHLGID 330
            A++HLG +
Sbjct: 320 KAYEHLGYE 328


>gi|160888649|ref|ZP_02069652.1| hypothetical protein BACUNI_01066 [Bacteroides uniformis ATCC 8492]
 gi|317477987|ref|ZP_07937170.1| Holliday junction DNA helicase RuvB [Bacteroides sp. 4_1_36]
 gi|156861963|gb|EDO55394.1| hypothetical protein BACUNI_01066 [Bacteroides uniformis ATCC 8492]
 gi|316905901|gb|EFV27672.1| Holliday junction DNA helicase RuvB [Bacteroides sp. 4_1_36]
          Length = 392

 Score =  345 bits (884), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 175/331 (52%), Positives = 238/331 (71%), Gaps = 4/331 (1%)

Query: 2   MDREGLLSRN---VSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M++E    RN   V+  + D  + LRP   E+F+GQ +   NL++F++AA+ R EALDHV
Sbjct: 48  MEQEDFDIRNQQPVTSRERDFENALRPLNFEDFSGQDKVVDNLRIFVKAARLRGEALDHV 107

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTL+ ++A ELGV F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRL
Sbjct: 108 LLHGPPGLGKTTLSNIIANELGVGFKITSGPVLDKPGDLAGVLTSLEPNDVLFIDEIHRL 167

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           S +VEE LY AMED+++D+M+ +GPSARS++I+L+ FTL+ ATTR GLLT PL+ RFGI 
Sbjct: 168 SPVVEEYLYSAMEDYRIDIMIDKGPSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGIN 227

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
           + L +Y+ + L  I++R + +  +  +  AA EIA RSRGTPRIA  LLRRVRDFA+V  
Sbjct: 228 LHLEYYDDDVLSGIIRRSSGILDVPCSVRAAAEIASRSRGTPRIANALLRRVRDFAQVKG 287

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
           + +I  EIA  AL  L IDK G D++D + L  I   F GGPVG+ TI+  L E    IE
Sbjct: 288 SGSIDTEIAQFALEALNIDKYGLDEIDNKILCTIIDKFKGGPVGLTTIATALGEDAGTIE 347

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
           ++ EP++I++GF++RTPRGR +  +A++HLG
Sbjct: 348 EVYEPFLIKEGFLKRTPRGREVTELAYKHLG 378


>gi|333029484|ref|ZP_08457545.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacteroides
           coprosuis DSM 18011]
 gi|332740081|gb|EGJ70563.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacteroides
           coprosuis DSM 18011]
          Length = 363

 Score =  345 bits (884), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 169/307 (55%), Positives = 225/307 (73%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP +  +F GQ +   NL +F++AA+ RAEALDHVL  GPPGLGKTTL+ ++A EL V 
Sbjct: 46  LRPLSFSDFNGQDKVVENLTIFVKAARLRAEALDHVLLHGPPGLGKTTLSNIIANELEVG 105

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS +VEE LY AMED+++D+M+ +G
Sbjct: 106 FKVTSGPVLDKPGDLAGVLTSLEPNDVLFIDEIHRLSPVVEEYLYSAMEDYRIDIMIDKG 165

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSARS+++ L+ FTL+ ATTR GLLT PL+ RFGI + L +Y+ + L TI++R A +  +
Sbjct: 166 PSARSIQLELNPFTLVGATTRSGLLTAPLRARFGINLHLEYYDDDVLTTIIKRSAAILDV 225

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
              D+AA EIA RSRGTPRI   LLRRVRDFA+V    +I  +IA  AL  L IDK G D
Sbjct: 226 PCDDQAAAEIASRSRGTPRICNALLRRVRDFAQVKGDGSIDIKIAQYALEALNIDKYGLD 285

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           ++D + L  +   F GGPVG+ TI+  L E    IE++ EP++I++GFI+RTPRGR + P
Sbjct: 286 EIDNKILCTVIDKFDGGPVGLTTIATALGEDPGTIEEVYEPFLIKEGFIKRTPRGREVTP 345

Query: 322 IAWQHLG 328
           +A++HLG
Sbjct: 346 LAYKHLG 352


>gi|322392598|ref|ZP_08066058.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           peroris ATCC 700780]
 gi|321144590|gb|EFX39991.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           peroris ATCC 700780]
          Length = 332

 Score =  345 bits (884), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 170/309 (55%), Positives = 222/309 (71%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E+ GQ +    L++FIEAAK R EALDHVL  GPPGLGKTT+A V+A ELGVN
Sbjct: 20  LRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANELGVN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGPVI KAGDL A+L +LE  DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G
Sbjct: 80  LKQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            ++RSV ++L  FTLI ATTR G+L+NPL+ RFGI   + +Y  +DL  IV+R A +  +
Sbjct: 140 EASRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYTHDDLTEIVERTADIFEM 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T EAA E+A+RSRGTPRIA RLL+RVRDFA++     I   I D AL  L +D  G D
Sbjct: 200 EITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGDGLIDDVITDKALTMLDVDHEGLD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GFI RT  GR+   
Sbjct: 260 YVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRSGRVATA 319

Query: 322 IAWQHLGID 330
            A++HLG +
Sbjct: 320 KAYEHLGYE 328


>gi|239907718|ref|YP_002954459.1| holliday junction DNA helicase RuvB [Desulfovibrio magneticus RS-1]
 gi|239797584|dbj|BAH76573.1| holliday junction DNA helicase RuvB [Desulfovibrio magneticus RS-1]
          Length = 333

 Score =  344 bits (883), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 175/323 (54%), Positives = 231/323 (71%), Gaps = 4/323 (1%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           EGL+    S +D     +RP  L +F GQ +  +NLKVF+ AA  +   LDH L  GPPG
Sbjct: 10  EGLIPAAPSPDDT----IRPSRLADFIGQDDLRANLKVFLRAALEQGRTLDHSLLYGPPG 65

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLAQ++A ELGVN   T+GPV+ + GDLAA++TNL   D+LFIDEIHR+   VEEI
Sbjct: 66  LGKTTLAQIMASELGVNLVQTTGPVLERCGDLAAIVTNLRRGDILFIDEIHRMPAAVEEI 125

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPAMEDF+LDL++G+GP AR+V+I+L  FTL+ ATTR+GLLT+PL+DRFG+  RL FY 
Sbjct: 126 LYPAMEDFKLDLIIGQGPGARTVRIDLEPFTLVGATTRLGLLTSPLRDRFGVIFRLEFYG 185

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            ++L  IV R A + G+A+T + A  I  RSRGTPRIAGRLLRRVRDFA VA A+T+  E
Sbjct: 186 PDELARIVTRAAGILGIAITPDGALAIGQRSRGTPRIAGRLLRRVRDFAVVAGAQTLDGE 245

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +A  AL RL +D  G D +D + L  +  ++ GGPVG++T++  LSE    +E++ EPY+
Sbjct: 246 LAAKALARLDVDPHGLDMMDRKILETLIHHYEGGPVGVKTLAVALSEEVRTLEEIYEPYL 305

Query: 305 IQQGFIQRTPRGRLLMPIAWQHL 327
           IQ G I+RTPRGR+    A+ H+
Sbjct: 306 IQCGLIKRTPRGRVATAKAYAHI 328


>gi|257066398|ref|YP_003152654.1| Holliday junction DNA helicase RuvB [Anaerococcus prevotii DSM
           20548]
 gi|256798278|gb|ACV28933.1| Holliday junction DNA helicase RuvB [Anaerococcus prevotii DSM
           20548]
          Length = 335

 Score =  344 bits (883), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 173/330 (52%), Positives = 236/330 (71%), Gaps = 1/330 (0%)

Query: 3   DREGLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           + E ++  N   ED  + S +RPR L+++ GQ +    L +FI+++ +R E LDHVL  G
Sbjct: 4   ENERIVGSNEQIEDLQEESCIRPRWLKDYIGQDKVKEKLDIFIQSSLSRNEPLDHVLLQG 63

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTL+ ++A ELGVN R TSGP I +  DLA++LTNL + DVLFIDEIHR++  V
Sbjct: 64  PPGLGKTTLSTIIANELGVNLRVTSGPAIERPSDLASILTNLAEGDVLFIDEIHRINRSV 123

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILY AMEDF LD++VG+GP+A+S++I+L++FTLI ATTR G+L+ PL+DRFG+ + LN
Sbjct: 124 EEILYSAMEDFVLDIIVGKGPNAQSIRIDLAKFTLIGATTRAGMLSAPLRDRFGVLLALN 183

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
            Y+ +DL TIV+R A++  + + D+ A EIA RSRGTPRIA RLL+RVRDFA V   + I
Sbjct: 184 LYDTKDLTTIVKRSAQILDIPIDDKGALEIARRSRGTPRIANRLLKRVRDFAIVKADEKI 243

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
             E +   L  L ID MG D +D + +  +  NFGGGPVG++TI+A        IED+ E
Sbjct: 244 DFETSKRGLELLEIDPMGLDTMDKKIIMTMYDNFGGGPVGVDTIAASTGIENVTIEDVYE 303

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           PY++Q GFI RTPRGR+L   A++H G+ I
Sbjct: 304 PYLLQIGFISRTPRGRVLTRKAYEHYGLKI 333


>gi|327467985|gb|EGF13475.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           sanguinis SK330]
          Length = 332

 Score =  344 bits (883), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 168/309 (54%), Positives = 225/309 (72%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L+E+ GQ +    LK+FIEAAK R EALDH L  GPPGLGKTT+A V+A ELGVN
Sbjct: 20  LRPQYLQEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANELGVN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGPVI K+GDL A+L +LE  DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G
Sbjct: 80  LKQTSGPVIEKSGDLVAILNDLEPGDVLFIDEIHRLPMAVEEVLYSAMEDFYIDIMIGSG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            ++RSV ++L  FTLI ATTR G+L+NPL+ RFGI   + +YE  DL  IV+R A++  +
Sbjct: 140 ETSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYEAGDLTEIVERTAEIFEM 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T EAA E+A+RSRGTPRIA RLL+RVRD+A++     I  +I D AL  L +D+ G D
Sbjct: 200 DITHEAAKELALRSRGTPRIANRLLKRVRDYAQIMGNGLIDDKITDQALSMLDVDQEGLD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GF+ RT  GR+   
Sbjct: 260 YVDQKILKTMIEVYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFVIRTRTGRVATR 319

Query: 322 IAWQHLGID 330
            A++HLG +
Sbjct: 320 KAYEHLGYE 328


>gi|270295000|ref|ZP_06201201.1| Holliday junction DNA helicase RuvB [Bacteroides sp. D20]
 gi|270274247|gb|EFA20108.1| Holliday junction DNA helicase RuvB [Bacteroides sp. D20]
          Length = 349

 Score =  344 bits (883), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 175/331 (52%), Positives = 238/331 (71%), Gaps = 4/331 (1%)

Query: 2   MDREGLLSRN---VSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M++E    RN   V+  + D  + LRP   E+F+GQ +   NL++F++AA+ R EALDHV
Sbjct: 5   MEQEDFDIRNQQPVTSRERDFENALRPLNFEDFSGQDKVVDNLRIFVKAARLRGEALDHV 64

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTL+ ++A ELGV F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRL
Sbjct: 65  LLHGPPGLGKTTLSNIIANELGVGFKITSGPVLDKPGDLAGVLTSLEPNDVLFIDEIHRL 124

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           S +VEE LY AMED+++D+M+ +GPSARS++I+L+ FTL+ ATTR GLLT PL+ RFGI 
Sbjct: 125 SPVVEEYLYSAMEDYRIDIMIDKGPSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGIN 184

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
           + L +Y+ + L  I++R + +  +  +  AA EIA RSRGTPRIA  LLRRVRDFA+V  
Sbjct: 185 LHLEYYDDDVLSGIIRRSSGILDVPCSVRAAAEIASRSRGTPRIANALLRRVRDFAQVKG 244

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
           + +I  EIA  AL  L IDK G D++D + L  I   F GGPVG+ TI+  L E    IE
Sbjct: 245 SGSIDTEIAQFALEALNIDKYGLDEIDNKILCTIIDKFKGGPVGLTTIATALGEDAGTIE 304

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
           ++ EP++I++GF++RTPRGR +  +A++HLG
Sbjct: 305 EVYEPFLIKEGFLKRTPRGREVTELAYKHLG 335


>gi|315606858|ref|ZP_07881867.1| crossover junction ATP-dependent DNA helicase RuvB [Prevotella
           buccae ATCC 33574]
 gi|315251523|gb|EFU31503.1| crossover junction ATP-dependent DNA helicase RuvB [Prevotella
           buccae ATCC 33574]
          Length = 345

 Score =  344 bits (883), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 169/307 (55%), Positives = 222/307 (72%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP   ++F GQ +   NL++F+EAAK R E LDH L  GPPGLGKTTL+ ++A ELGV 
Sbjct: 23  LRPVHFQDFNGQQKVVENLEIFVEAAKFRGEPLDHTLLYGPPGLGKTTLSNIIANELGVG 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS +VEE LY AMED+++D+M+ +G
Sbjct: 83  FKITSGPVLDKPGDLAGILTSLEPNDVLFIDEIHRLSPVVEEYLYSAMEDYRIDIMIDKG 142

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSARS++I+L+ FTL+ ATTR G+LT PL+ RFGI + L +Y  E L  I++R A L  +
Sbjct: 143 PSARSIQIDLNPFTLVGATTRSGMLTAPLRARFGINMHLEYYAPETLMRIIKRSAYLLRV 202

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + DEAA EI+ RSRGTPRIA  LLRRVRDFA+V    TI   IA  AL  L ID+ G D
Sbjct: 203 PIDDEAAIEISRRSRGTPRIANSLLRRVRDFAQVKGNGTIDTVIAKMALQALNIDQYGLD 262

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           ++D + L  I   F GGPVG+ TI+  + E    +E++ EP++I +GFI+RTPRGR+   
Sbjct: 263 EIDNKILLTIIDKFRGGPVGVSTIATAIGEDSGTVEEVYEPFLIMEGFIKRTPRGRMATR 322

Query: 322 IAWQHLG 328
           +A++HLG
Sbjct: 323 LAYEHLG 329


>gi|223986043|ref|ZP_03636072.1| hypothetical protein HOLDEFILI_03378 [Holdemania filiformis DSM
           12042]
 gi|223961993|gb|EEF66476.1| hypothetical protein HOLDEFILI_03378 [Holdemania filiformis DSM
           12042]
          Length = 336

 Score =  344 bits (883), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 177/328 (53%), Positives = 232/328 (70%), Gaps = 1/328 (0%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD E LLS  + +   D S LRP+ L ++ GQ +   NLKVFI+AA  R E LDHVL  G
Sbjct: 1   MDEERLLS-ALPEAGDDESSLRPQRLTDYIGQTQLKENLKVFIQAALQRNETLDHVLLYG 59

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+G   R+ SGP I ++GDLAA+L+ LE  DVLFIDEIHRL  +V
Sbjct: 60  PPGLGKTTLAYILANEMGGKVRTASGPSIERSGDLAAILSTLEPGDVLFIDEIHRLPKMV 119

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMEDF +D++VG+    RS++++L  FTL+ ATTR G LT PL+DRFGI  +L 
Sbjct: 120 EEVLYPAMEDFCIDIVVGKDSGVRSIRLDLPPFTLVGATTRAGDLTAPLRDRFGIVNKLE 179

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y+ + L  IV R +++  +A   EA  EIA RSRGTPRIA RLLRRVRDFA+V +   I
Sbjct: 180 YYDEDQLSQIVSRTSRVLNVAAAPEAVREIAKRSRGTPRIANRLLRRVRDFAQVLNGGVI 239

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           + ++A  AL RL +D +G D +D+RYL  I   F GGPVG+E +++ +SE    +ED+ E
Sbjct: 240 SLDVAQTALDRLRVDSLGLDDVDIRYLRGIIERFRGGPVGLEALASSISEEPMTLEDVYE 299

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           PY+IQ GFI RTPRGR+  P A++HL I
Sbjct: 300 PYLIQIGFINRTPRGRVATPKAYEHLKI 327


>gi|325104948|ref|YP_004274602.1| Holliday junction DNA helicase RuvB [Pedobacter saltans DSM 12145]
 gi|324973796|gb|ADY52780.1| Holliday junction DNA helicase RuvB [Pedobacter saltans DSM 12145]
          Length = 337

 Score =  344 bits (883), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 175/321 (54%), Positives = 228/321 (71%), Gaps = 1/321 (0%)

Query: 9   SRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           S  +S  D +I  +LRP+  ++FTGQ +   NLK+F++AAK R E LDHVL  GPPGLGK
Sbjct: 9   SEKLSFTDKEIEKVLRPQEFDDFTGQEKILENLKIFVKAAKLRGEPLDHVLLHGPPGLGK 68

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127
           TTL+ ++A E+GV  + TSGPV+ K GDLA LLTNL+  D+LFIDEIHRLS +VEE LY 
Sbjct: 69  TTLSHIIANEMGVGIKITSGPVLDKPGDLAGLLTNLDAGDILFIDEIHRLSPLVEEYLYS 128

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           AMEDF++D+M+  GP+ARSV+I+LS FTL+ ATTR GLLT PL+ RFGI  RL +Y+ + 
Sbjct: 129 AMEDFKIDIMLETGPNARSVQISLSPFTLVGATTRSGLLTAPLRARFGINSRLQYYDAKL 188

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           L TIV R A +    +T+  A EIA RSRGTPRIA  LLRR RDFA++     I  EIA 
Sbjct: 189 LTTIVIRSAYILKTPITETGAYEIARRSRGTPRIANALLRRTRDFAQIKGNGEIDTEIAK 248

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
            AL  L +D+ G D++D R L+ I   F GGPVG++TI+  + E    IE++ EP++IQ+
Sbjct: 249 YALNALNVDEHGLDEMDNRILSTIVDKFKGGPVGLKTIATAVGEDEGTIEEVYEPFLIQE 308

Query: 308 GFIQRTPRGRLLMPIAWQHLG 328
           G++ RT RGR   P A+QHLG
Sbjct: 309 GYLMRTSRGREATPAAYQHLG 329


>gi|300362257|ref|ZP_07058433.1| crossover junction ATP-dependent DNA helicase RuvB [Lactobacillus
           gasseri JV-V03]
 gi|300353248|gb|EFJ69120.1| crossover junction ATP-dependent DNA helicase RuvB [Lactobacillus
           gasseri JV-V03]
          Length = 339

 Score =  344 bits (883), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 174/327 (53%), Positives = 229/327 (70%), Gaps = 1/327 (0%)

Query: 3   DREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           D E ++    S+ED  I L LRP+ L ++ GQ +  S +K++I+AAK R EALDHVL  G
Sbjct: 6   DEERIIGAESSEEDETIELSLRPQLLAQYIGQDKVKSEMKIYIKAAKKRDEALDHVLLYG 65

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA V+A E+GV+ +STSGP I KAGDL ALL+ L   DVLFIDEIHRL+  V
Sbjct: 66  PPGLGKTTLAFVIANEMGVHLKSTSGPAIEKAGDLVALLSELNPGDVLFIDEIHRLAKPV 125

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMEDF +D++VGEG +  +V + L  FTLI ATTR G L+ PL+DRFGI   + 
Sbjct: 126 EEVLYSAMEDFYIDIVVGEGQTTHAVHVPLPPFTLIGATTRAGQLSAPLRDRFGIIEHMQ 185

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y ++DL+ I+QR + +    +  EAA E+A RSRGTPR+A RLL+RVRDFAEV   + I
Sbjct: 186 YYSVDDLEKIIQRSSVVFNTKIDPEAAIELARRSRGTPRVANRLLKRVRDFAEVKGEEAI 245

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           +      +L  L +D  G DQ D + L M+  N+GGGPVGI+TI+A + E  D IE++ E
Sbjct: 246 SLATTKHSLHLLEVDDEGLDQTDRKLLRMMIENYGGGPVGIKTIAANVGEDTDTIEEVYE 305

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLG 328
           PY++Q+GFI RTPRGR +   A+  LG
Sbjct: 306 PYLLQKGFITRTPRGRSVTQKAYLQLG 332


>gi|239629699|ref|ZP_04672730.1| holliday junction ATP-dependent DNA helicase ruvB [Lactobacillus
           paracasei subsp. paracasei 8700:2]
 gi|301065825|ref|YP_003787848.1| holliday junction resolvasome, helicase subunit [Lactobacillus
           casei str. Zhang]
 gi|239528385|gb|EEQ67386.1| holliday junction ATP-dependent DNA helicase ruvB [Lactobacillus
           paracasei subsp. paracasei 8700:2]
 gi|300438232|gb|ADK17998.1| Holliday junction resolvasome, helicase subunit [Lactobacillus
           casei str. Zhang]
          Length = 338

 Score =  344 bits (883), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 173/329 (52%), Positives = 229/329 (69%), Gaps = 2/329 (0%)

Query: 3   DREGLLSRNV--SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           D++ L+S +V  S E      LRPR L ++ GQ      L+V+I AAK R E+LDHVL  
Sbjct: 5   DKDRLVSGDVDDSNEAQIEKSLRPRMLAQYIGQDRVKHQLEVYITAAKQREESLDHVLLY 64

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA V+A ELGVN R+TSGP I K GDL ALL  L   DVLFIDEIHRL  I
Sbjct: 65  GPPGLGKTTLALVIANELGVNIRTTSGPAIEKPGDLVALLNELHPGDVLFIDEIHRLPKI 124

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LY AMEDF +D++VG+GP+A  V   L  FTLI ATTR G+L+ PL+DRFGI   +
Sbjct: 125 VEEMLYSAMEDFYIDIVVGQGPTAHPVHFPLPPFTLIGATTRAGMLSAPLRDRFGISEHM 184

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y  +DL  IV+R A +  +A+  E A EIA RSRGTPR+A RLL+R+RDFAEVA    
Sbjct: 185 AYYSADDLSEIVKRSATIFDMAIDAEGAHEIARRSRGTPRVANRLLKRIRDFAEVAGQSP 244

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +  ++ D AL +L +D+ G DQ+D + L  + R++ GGPVG+ TI+A + E    IE++ 
Sbjct: 245 VDIQMVDHALDQLQVDQQGLDQIDRKLLMFMIRDYEGGPVGLSTIAANIGEEMATIEEMY 304

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           EPY++Q G+++RTPRGR++ P  + H+G+
Sbjct: 305 EPYLLQIGYLKRTPRGRMVTPAGFAHMGL 333


>gi|116494313|ref|YP_806047.1| Holliday junction DNA helicase RuvB [Lactobacillus casei ATCC 334]
 gi|191637649|ref|YP_001986815.1| Holliday junction DNA helicase RuvB [Lactobacillus casei BL23]
 gi|227534465|ref|ZP_03964514.1| Holliday junction DNA helicase B [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|122264258|sp|Q03B17|RUVB_LACC3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|238693019|sp|B3WC56|RUVB_LACCB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|116104463|gb|ABJ69605.1| Holliday junction DNA helicase subunit RuvB [Lactobacillus casei
           ATCC 334]
 gi|190711951|emb|CAQ65957.1| Holliday junction ATP-dependent DNA helicase ruvB [Lactobacillus
           casei BL23]
 gi|227187864|gb|EEI67931.1| Holliday junction DNA helicase B [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|327381704|gb|AEA53180.1| Holliday junction DNA helicase RuvA [Lactobacillus casei LC2W]
 gi|327384870|gb|AEA56344.1| Holliday junction DNA helicase RuvA [Lactobacillus casei BD-II]
          Length = 338

 Score =  344 bits (883), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 173/329 (52%), Positives = 229/329 (69%), Gaps = 2/329 (0%)

Query: 3   DREGLLSRNV--SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           D++ L+S +V  S E      LRPR L ++ GQ      L+V+I AAK R E+LDHVL  
Sbjct: 5   DKDRLVSGDVDDSNEAQIEKSLRPRMLAQYIGQDRVKHQLEVYITAAKQREESLDHVLLY 64

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA V+A ELGVN R+TSGP I K GDL ALL  L   DVLFIDEIHRL  I
Sbjct: 65  GPPGLGKTTLALVIANELGVNIRTTSGPAIEKPGDLVALLNELHPGDVLFIDEIHRLPKI 124

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LY AMEDF +D++VG+GP+A  V   L  FTLI ATTR G+L+ PL+DRFGI   +
Sbjct: 125 VEEMLYSAMEDFYIDIVVGQGPTAHPVHFPLPPFTLIGATTRAGMLSAPLRDRFGISEHM 184

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y  +DL  IV+R A +  +A+  E A EIA RSRGTPR+A RLL+R+RDFAEVA    
Sbjct: 185 AYYSADDLSEIVKRSATIFDMAIDAEGAHEIARRSRGTPRVANRLLKRIRDFAEVAGQSP 244

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +  ++ D AL +L +D+ G DQ+D + L  + R++ GGPVG+ TI+A + E    IE++ 
Sbjct: 245 VDIQMVDHALDQLQVDQQGLDQIDRKLLMFMIRDYEGGPVGLSTIAANIGEEMATIEEMY 304

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           EPY++Q G+++RTPRGR++ P  + H+G+
Sbjct: 305 EPYLLQIGYLKRTPRGRMVTPAGFAHMGM 333


>gi|315160795|gb|EFU04812.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX0645]
          Length = 338

 Score =  344 bits (883), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 174/331 (52%), Positives = 224/331 (67%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M + E LLS    + +A I   LRP+ L ++ GQ +    L ++IEAAK R EALDH L 
Sbjct: 1   MTEEERLLSAASQEAEASIEKSLRPQFLAQYIGQDKVKQELTIYIEAAKNRNEALDHTLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTT+A V+A E+ VN R+TSGP I +AGDL A+L  LE  DVLFIDEIHRL  
Sbjct: 61  YGPPGLGKTTMAMVIANEMNVNIRTTSGPAIERAGDLVAILNELEPGDVLFIDEIHRLPR 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LY AMEDF +D+MVG+G +A  V   L  FTL+ ATTR G+L+ PL+DRFGI   
Sbjct: 121 VVEEMLYSAMEDFYIDIMVGQGTTAHPVHFPLPPFTLVGATTRAGMLSAPLRDRFGIISH 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           + +Y+ +DLK IV R A +    + +E A EIA RSRGTPRIA RLL+RVRDFA+V    
Sbjct: 181 MEYYQEQDLKEIVLRSADIFQTEIFEEGAFEIARRSRGTPRIANRLLKRVRDFAQVQSDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I R IAD AL  L +D  G D +D + L  +   +GGGP G+ T+S  + E  + +ED+
Sbjct: 241 KIDRAIADKALTLLQVDHQGLDYVDQKLLKTMIDLYGGGPGGLSTLSVNIGEETETVEDM 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
            EPY+IQ+GFI+RTPRGR+  P A+ H G D
Sbjct: 301 YEPYLIQKGFIKRTPRGRIATPFAYAHFGYD 331


>gi|320548063|ref|ZP_08042343.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           equinus ATCC 9812]
 gi|320447305|gb|EFW88068.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           equinus ATCC 9812]
          Length = 332

 Score =  344 bits (883), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 168/307 (54%), Positives = 221/307 (71%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L+E+ GQ +  + LK+FIEAAK R E+LDHVL  GPPGLGKTT+A V+A ELGVN
Sbjct: 20  LRPQYLKEYIGQDKVKNQLKIFIEAAKLRDESLDHVLLFGPPGLGKTTMAFVIANELGVN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGP I KAGDL A+L +LE  DVLFIDEIHR+ + VEE+LY AMEDF +D+M+G G
Sbjct: 80  LKQTSGPAIEKAGDLVAILNDLEPGDVLFIDEIHRMPMAVEEVLYSAMEDFYIDIMIGNG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            ++RSV + L  FTLI ATTR G+L+NPL+ RFGI   + +Y +EDL  IV+R A +  +
Sbjct: 140 ETSRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYAVEDLTEIVERTADIFEM 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  EAA E+A RSRGTPRIA RLL+RVRD+A++     IT+ I D AL  L +D  G D
Sbjct: 200 EIVHEAAQELARRSRGTPRIANRLLKRVRDYAQIMGDGIITKGITDKALTMLDVDHEGLD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   + GGPVG+ T+S  ++E RD +ED+ EPY+IQ+GFI RT  GR+   
Sbjct: 260 YIDQKILRTMIEVYNGGPVGLGTLSVNIAEERDTVEDMYEPYLIQKGFIMRTRTGRVATA 319

Query: 322 IAWQHLG 328
            A++HLG
Sbjct: 320 KAYEHLG 326


>gi|319940375|ref|ZP_08014725.1| Holliday junction ATP-dependent DNA helicase ruvB [Streptococcus
           anginosus 1_2_62CV]
 gi|319810431|gb|EFW06773.1| Holliday junction ATP-dependent DNA helicase ruvB [Streptococcus
           anginosus 1_2_62CV]
          Length = 332

 Score =  344 bits (883), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 169/309 (54%), Positives = 224/309 (72%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L+E+ GQ +  + LK+FIEAAK R EALDH L  GPPGLGKTT+A V+A ELGVN
Sbjct: 20  LRPQYLQEYIGQDKVKNQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANELGVN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGPVI KAGDL A+L +LE  DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G
Sbjct: 80  LKQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGSG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            ++RSV + L  FTLI ATTR G+L+NPL+ RFGI   + +Y   DL  IV+R A++  +
Sbjct: 140 ETSRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYAEADLTEIVERTAEIFEM 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T EAA E+A+RSRGTPRIA RLL+RVRDFA++     I   I D AL  L +D+ G D
Sbjct: 200 DITHEAAEELALRSRGTPRIANRLLKRVRDFAQIMGDGLIDAHITDQALSMLDVDQEGLD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GF+ RT  GR++  
Sbjct: 260 YVDQKILKTMIEVYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFVMRTRTGRVVTR 319

Query: 322 IAWQHLGID 330
            A++HLG +
Sbjct: 320 KAYEHLGYE 328


>gi|27468242|ref|NP_764879.1| Holliday junction DNA helicase B [Staphylococcus epidermidis ATCC
           12228]
 gi|57867144|ref|YP_188780.1| Holliday junction DNA helicase RuvB [Staphylococcus epidermidis
           RP62A]
 gi|251811046|ref|ZP_04825519.1| Holliday junction DNA helicase B [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|282875934|ref|ZP_06284801.1| Holliday junction DNA helicase RuvB [Staphylococcus epidermidis
           SK135]
 gi|293366402|ref|ZP_06613081.1| crossover junction endoribonuclease subunit B [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|33301649|sp|Q8CS91|RUVB_STAES RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|71153738|sp|Q5HNR0|RUVB_STAEQ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|27315788|gb|AAO04923.1|AE016748_157 holliday junction DNA helicase [Staphylococcus epidermidis ATCC
           12228]
 gi|57637802|gb|AAW54590.1| Holliday junction DNA helicase RuvB [Staphylococcus epidermidis
           RP62A]
 gi|251805422|gb|EES58079.1| Holliday junction DNA helicase B [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|281294959|gb|EFA87486.1| Holliday junction DNA helicase RuvB [Staphylococcus epidermidis
           SK135]
 gi|291319527|gb|EFE59894.1| crossover junction endoribonuclease subunit B [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|329724653|gb|EGG61159.1| Holliday junction DNA helicase RuvB [Staphylococcus epidermidis
           VCU144]
 gi|329733790|gb|EGG70116.1| Holliday junction DNA helicase RuvB [Staphylococcus epidermidis
           VCU045]
 gi|329737203|gb|EGG73457.1| Holliday junction DNA helicase RuvB [Staphylococcus epidermidis
           VCU028]
          Length = 334

 Score =  344 bits (883), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 169/328 (51%), Positives = 230/328 (70%), Gaps = 2/328 (0%)

Query: 2   MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD+  ++ +    ED D+ L LRP  L+++ GQ    SNL+VFI+AAK R E LDHVL  
Sbjct: 1   MDKR-MVDQEFHNEDTDLELSLRPTQLKQYIGQSSIKSNLEVFIKAAKLRQEPLDHVLLF 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTL+ ++A E+ VN R+ SGP + + GDLAA+L+ L+  DVLFIDEIHRLS +
Sbjct: 60  GPPGLGKTTLSNIIANEMEVNIRTISGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSV 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDF LD+++G+G  ARS++I+L  FTL+ ATTR G LT PL+DRFG+ +RL
Sbjct: 120 VEEVLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATTRAGSLTGPLRDRFGVHLRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y   DLK I+ R A++ G  +  E+A E+A RSRGTPRIA RLL+RVRDF +V     
Sbjct: 180 EYYNENDLKEIITRTAEVLGTDIDKESALELARRSRGTPRIANRLLKRVRDFQQVNEDDQ 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I  E    AL  L +D+ G D +D + +  I   + GGPVG++TI+  + E R  IED+ 
Sbjct: 240 IYIETTKRALQLLQVDQHGLDYIDHKMMNCIINQYNGGPVGLDTIAVSIGEERVTIEDVY 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
           EP++IQ+GF++RTPRGR    +A++H  
Sbjct: 300 EPFLIQRGFLERTPRGRKATALAYEHFN 327


>gi|323143602|ref|ZP_08078279.1| Holliday junction DNA helicase RuvB [Succinatimonas hippei YIT
           12066]
 gi|322416665|gb|EFY07322.1| Holliday junction DNA helicase RuvB [Succinatimonas hippei YIT
           12066]
          Length = 379

 Score =  344 bits (883), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 171/308 (55%), Positives = 223/308 (72%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+TL+++ GQ +  S L++ + AAK R EALDHVL  GPPGLGKTTL+ ++A ELGV+
Sbjct: 55  LRPKTLKDYIGQEDVKSQLEIALAAAKKRGEALDHVLIFGPPGLGKTTLSNIIANELGVH 114

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
              TSGP + K GD AALLTNL+ RDV+FIDEIHRLS ++EE +YPAMED+Q+D+M GEG
Sbjct: 115 LSQTSGPALEKKGDAAALLTNLQPRDVIFIDEIHRLSPVIEEFMYPAMEDYQVDIMTGEG 174

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSARS+KI LS FTLI ATT+ G LT+PL+ RFGI ++L++Y   +L  I++  AK   +
Sbjct: 175 PSARSIKIGLSPFTLIGATTKAGTLTSPLRARFGIILQLSYYTPSELFLIIKASAKKLKI 234

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  + A EIA RSRGTPRIA RLL+RVRD+AEV     I  EIA AAL    ID  GFD
Sbjct: 235 KIDKDGAMEIAKRSRGTPRIANRLLKRVRDYAEVRGNGEINVEIAKAALDLQKIDPDGFD 294

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             D +YL  +  +F GGPVG+E+++A L   R+ +E ++EPY+IQQGFIQRT  GR+   
Sbjct: 295 DFDRQYLRSVILDFNGGPVGVESLAASLGHDRETLESVVEPYLIQQGFIQRTRSGRVATK 354

Query: 322 IAWQHLGI 329
            A+   G+
Sbjct: 355 KAYDKFGL 362


>gi|330998026|ref|ZP_08321857.1| Holliday junction DNA helicase RuvB [Paraprevotella xylaniphila YIT
           11841]
 gi|329569327|gb|EGG51107.1| Holliday junction DNA helicase RuvB [Paraprevotella xylaniphila YIT
           11841]
          Length = 344

 Score =  344 bits (882), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 173/320 (54%), Positives = 228/320 (71%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           S N S E    + LRP    +F+GQ++   NLKVF+EAAK R E LDH L  GPPGLGKT
Sbjct: 10  SSNSSAEREFENALRPLQFGDFSGQLKVVENLKVFVEAAKYRGEPLDHTLLHGPPGLGKT 69

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           TL+ ++A ELGV F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS +VEE LY A
Sbjct: 70  TLSNIIANELGVGFKVTSGPVLDKPGDLAGILTSLEPNDVLFIDEIHRLSPVVEEYLYSA 129

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           MED+++D+M+ +GPSARS++++L+ FTL+ ATTR GLLT PL+ RFGI + L +Y+ E L
Sbjct: 130 MEDYRIDIMIDKGPSARSIQLDLNPFTLVGATTRSGLLTAPLRARFGINLHLEYYDAEVL 189

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             IV+R A +  + +  +AA EIA RSRGTPRIA  LLRRVRDFA+V     +   IA  
Sbjct: 190 SRIVERSAHILSVPIEHDAAMEIAGRSRGTPRIANALLRRVRDFAQVRGTGRVDMAIARY 249

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL  L ID+ G D++D + L  I   F GGPVGI TI+  + E    +E++ EP++I++G
Sbjct: 250 ALEALNIDRYGLDEIDNKILLTIIDKFKGGPVGITTIATAIGEDAGTVEEVYEPFLIKEG 309

Query: 309 FIQRTPRGRLLMPIAWQHLG 328
           FI+RTPRGR +  +A++HLG
Sbjct: 310 FIKRTPRGREVTDMAYKHLG 329


>gi|332881690|ref|ZP_08449338.1| Holliday junction DNA helicase RuvB [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332680329|gb|EGJ53278.1| Holliday junction DNA helicase RuvB [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 344

 Score =  344 bits (882), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 173/320 (54%), Positives = 228/320 (71%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           S N S E    + LRP    +F+GQ++   NLKVF+EAAK R E LDH L  GPPGLGKT
Sbjct: 10  SSNSSAEREFENALRPLQFGDFSGQLKVVENLKVFVEAAKYRGEPLDHTLLHGPPGLGKT 69

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           TL+ ++A ELGV F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS +VEE LY A
Sbjct: 70  TLSNIIANELGVGFKVTSGPVLDKPGDLAGILTSLEPNDVLFIDEIHRLSPVVEEYLYSA 129

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           MED+++D+M+ +GPSARS++++L+ FTL+ ATTR GLLT PL+ RFGI + L +Y+ E L
Sbjct: 130 MEDYRIDIMIDKGPSARSIQLDLNPFTLVGATTRSGLLTAPLRARFGINLHLEYYDAEVL 189

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             IV+R A +  + +  +AA EIA RSRGTPRIA  LLRRVRDFA+V     +   IA  
Sbjct: 190 SRIVERSAHILSVPIEHDAAMEIAGRSRGTPRIANALLRRVRDFAQVRGTGRVDMAIARY 249

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL  L ID+ G D++D + L  I   F GGPVGI TI+  + E    +E++ EP++I++G
Sbjct: 250 ALEALNIDRYGLDEIDNKILLTIIDKFKGGPVGITTIATAIGEDAGTVEEVYEPFLIKEG 309

Query: 309 FIQRTPRGRLLMPIAWQHLG 328
           FI+RTPRGR +  +A++HLG
Sbjct: 310 FIKRTPRGREVTDMAYKHLG 329


>gi|169831521|ref|YP_001717503.1| Holliday junction DNA helicase RuvB [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638365|gb|ACA59871.1| Holliday junction DNA helicase RuvB [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 344

 Score =  344 bits (882), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 176/332 (53%), Positives = 229/332 (68%), Gaps = 1/332 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M+D+  +++  +  ED D   LRPR L+EF GQ      L + IEAA+ R EALDHVL  
Sbjct: 5   MLDQR-IVAPGLKVEDVDEVTLRPRYLDEFIGQARVRETLALCIEAARRRGEALDHVLLY 63

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++ARE+G N R TSGP I + GDLAA+LTNL   D+LFIDE+HRLS  
Sbjct: 64  GPPGLGKTTLAHIIAREMGGNIRVTSGPAIERPGDLAAILTNLGPGDILFIDEVHRLSRT 123

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILYP MEDF LD+++G+GP ARS+++NL RFTL+ ATTR G LT+PL+DRFG+  RL
Sbjct: 124 VEEILYPGMEDFALDIVIGKGPGARSLRLNLPRFTLVGATTRAGHLTSPLRDRFGVVSRL 183

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  EDL  IV RGA +  + +    A  IA R+RGTPR+A RLL+RVRD+ +V     
Sbjct: 184 EFYSPEDLLAIVIRGAGIIRVDIEPAGAALIARRARGTPRVANRLLKRVRDYVQVRAQGV 243

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           IT + A  AL  L ID++G D  D   L ++   FGGGPVG++T++A   E    +ED+ 
Sbjct: 244 ITADNAVEALEFLGIDELGLDNTDRHLLAVLIEKFGGGPVGLDTLAAATGEEAANLEDVY 303

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EPY++Q G I RT RGR+  P+A++H+G   P
Sbjct: 304 EPYLLQSGLITRTSRGRVATPLAYRHMGSPQP 335


>gi|315658089|ref|ZP_07910961.1| crossover junction ATP-dependent DNA helicase RuvB [Staphylococcus
           lugdunensis M23590]
 gi|315496418|gb|EFU84741.1| crossover junction ATP-dependent DNA helicase RuvB [Staphylococcus
           lugdunensis M23590]
          Length = 334

 Score =  344 bits (882), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 170/328 (51%), Positives = 230/328 (70%), Gaps = 3/328 (0%)

Query: 1   MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M DR  ++ ++  QED+     LRP  L+++ GQ    SNL+VFI+AAK R E LDHVL 
Sbjct: 1   MDDR--MVDQSFHQEDSAFEYSLRPTYLKQYIGQTSIKSNLEVFIQAAKLREEPLDHVLL 58

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTL+ ++A E+ VN R+ SGP + + GDLAA+L+ L+  DVLFIDEIHRLS 
Sbjct: 59  FGPPGLGKTTLSNIIANEMEVNIRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSS 118

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMEDF LD+++G+G  ARS++I+L  FTLI ATTR G LT PL+DRFG+ +R
Sbjct: 119 VVEEVLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLIGATTRAGSLTGPLRDRFGVHLR 178

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y   +LK I+ R A + G ++ DE+A E+A RSRGTPR+A RLL+RVRDF +V    
Sbjct: 179 LEYYNEHELKEIIIRTADVLGTSIDDESAVELAKRSRGTPRVANRLLKRVRDFQQVNGDD 238

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  E    AL  L +D+ G D +D + +  I   + GGPVG++TI+  + E R  IED+
Sbjct: 239 QIYIETTKKALKLLQVDEQGLDYIDHKMMNCIINQYQGGPVGLDTIAVSIGEERVTIEDV 298

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHL 327
            EP++IQ+GFI+RTPRGR     A++H 
Sbjct: 299 YEPFLIQKGFIERTPRGRKATAFAYEHF 326


>gi|229829131|ref|ZP_04455200.1| hypothetical protein GCWU000342_01216 [Shuttleworthia satelles DSM
           14600]
 gi|229792294|gb|EEP28408.1| hypothetical protein GCWU000342_01216 [Shuttleworthia satelles DSM
           14600]
          Length = 334

 Score =  344 bits (882), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 168/323 (52%), Positives = 229/323 (70%), Gaps = 1/323 (0%)

Query: 7   LLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           ++S  + +ED A    LRPR L E+ GQ +A  +L ++IEAAK R E+LDHVL  GPPGL
Sbjct: 5   IISTEIQEEDQAQEFSLRPRKLSEYIGQEKAKQSLGIYIEAAKNRGESLDHVLLYGPPGL 64

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLA +++ E+GVN + TSGP IAK G++AA+L+ L + D+LF+DEIHRL+  VEE+L
Sbjct: 65  GKTTLAGIISNEMGVNVKITSGPAIAKPGEMAAILSGLGEGDILFVDEIHRLNRQVEEVL 124

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           YPAMED+ +D+M+G+G SARS++++L  FTL+ ATTR GLL+ PL+DRFGI   L FY  
Sbjct: 125 YPAMEDYAIDIMIGKGQSARSIRLDLPHFTLVGATTRAGLLSAPLRDRFGIIHHLEFYTP 184

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           ++L  I++  A   G+ +  E A E+A RSRGTPR+A RLL+RVRD+AEV +   ITRE+
Sbjct: 185 QELSVIIRHSADKLGVTIDREGAYEMARRSRGTPRLANRLLKRVRDYAEVEYEGKITREV 244

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           A  AL  L +DKMG D  D   L  I   F GGPVG++T+SA + E    IE++ EPY++
Sbjct: 245 AGEALDLLEVDKMGLDSNDRLILMTIIEKFDGGPVGLDTLSAAIGEDAGTIEEVYEPYLV 304

Query: 306 QQGFIQRTPRGRLLMPIAWQHLG 328
           + G I RTP+GR+    A+ H G
Sbjct: 305 KNGLINRTPKGRVATDQAYHHFG 327


>gi|291459000|ref|ZP_06598390.1| holliday junction DNA helicase RuvB [Oribacterium sp. oral taxon
           078 str. F0262]
 gi|291418254|gb|EFE91973.1| holliday junction DNA helicase RuvB [Oribacterium sp. oral taxon
           078 str. F0262]
          Length = 336

 Score =  344 bits (882), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 173/333 (51%), Positives = 233/333 (69%), Gaps = 2/333 (0%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M+R  + +   S++ +    +RP+ L ++ GQ +    L V+I AAK RA++LDH LF G
Sbjct: 1   MERRIINTEESSEDRSFEPAIRPQLLSDYIGQRKLKEMLSVYIRAAKNRAQSLDHCLFYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTT+A ++A ELGVN + TSGP I K G++AALL NL + DVLF+DEIHRL+  V
Sbjct: 61  PPGLGKTTIANIIAHELGVNIKVTSGPAIEKPGEMAALLNNLSEGDVLFVDEIHRLNRQV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMEDF +D+M+G+  S+RS+++ L  FTLI ATTR GLL+ PL+DRFGI  +L 
Sbjct: 121 EEVLYPAMEDFAIDIMLGKDASSRSIRLELPHFTLIGATTRAGLLSAPLRDRFGIIAKLE 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FYE  +L+ IV R A++  + +  E A  IA+RSRGTPR+A RLLRR RDFA++ +   I
Sbjct: 181 FYETAELEEIVLRSARVLKVEIEPEGARRIALRSRGTPRLANRLLRRTRDFADIRYEGRI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T E AD AL  L +D++G DQ D  YL  I   F GGPVG+ET++A L E    IED+ E
Sbjct: 241 TAEAADYALDILDVDRLGLDQNDRSYLLTIMEKFSGGPVGLETLAASLGEDSGTIEDVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           PY++  G I RTPRGR+    A++HLG  +PH+
Sbjct: 301 PYLLMNGLIMRTPRGRVATERAYRHLG--LPHQ 331


>gi|283470917|emb|CAQ50128.1| holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus ST398]
          Length = 334

 Score =  344 bits (882), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 166/324 (51%), Positives = 231/324 (71%), Gaps = 1/324 (0%)

Query: 5   EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E ++ +++  E+ D  L LRP  L ++ GQ    SNL+VFI+AAK R E LDHVL  GPP
Sbjct: 3   ERMVDQSMHSEETDFELSLRPTRLRQYIGQNSIKSNLEVFIKAAKLRHEPLDHVLLFGPP 62

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTL+ ++A E+ VN R+ SGP + + GDLAA+L+ L+  DVLFIDEIHRLS +VEE
Sbjct: 63  GLGKTTLSNIIANEMEVNIRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSVVEE 122

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LYPAMEDF LD+++G+G  ARS++I+L  FTL+ ATTR G LT PL+DRFG+ +RL +Y
Sbjct: 123 VLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATTRAGSLTGPLRDRFGVHLRLEYY 182

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
              DLK I+ R A++ G  + +E+A E+A RSRGTPR+A RLL+RVRDF +V   + I  
Sbjct: 183 NESDLKEIIIRTAEVLGTGIDEESAIELAKRSRGTPRVANRLLKRVRDFQQVNEDEQIYI 242

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           E    AL  L +D+ G D +D + +  I + + GGPVG++ I+  + E R  IED+ EP+
Sbjct: 243 ETTKHALGLLQVDQHGLDYIDHKMMNCIIKQYNGGPVGLDAIAVTIGEERITIEDVYEPF 302

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHL 327
           +IQ+GF++RTPRGR   P+A++H 
Sbjct: 303 LIQKGFLERTPRGRKATPLAYEHF 326


>gi|270292038|ref|ZP_06198253.1| holliday junction DNA helicase RuvB [Streptococcus sp. M143]
 gi|270279566|gb|EFA25408.1| holliday junction DNA helicase RuvB [Streptococcus sp. M143]
          Length = 332

 Score =  344 bits (882), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 170/313 (54%), Positives = 221/313 (70%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E+ GQ +    L++FIEAAK R EALDHVL  GPPGLGKTT+A V+A ELGVN
Sbjct: 20  LRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANELGVN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGPVI KAGDL A+L +LE  DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G
Sbjct: 80  LKQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
             +RSV ++L  FTLI ATTR G+L+NPL+ RFGI   + +Y   DL  IV+R A +  +
Sbjct: 140 EGSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYAHADLTEIVERTADIFEM 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T EAA E+A+RSRGTPRIA RLL+RVRDFA++     I   I D AL  L +D  G D
Sbjct: 200 EITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGNGVIDDVITDKALTMLDVDHEGLD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GFI RT  GR+   
Sbjct: 260 YVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRSGRVATA 319

Query: 322 IAWQHLGIDIPHR 334
            A++HLG +   +
Sbjct: 320 KAYEHLGYEYSEK 332


>gi|327463406|gb|EGF09725.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           sanguinis SK1057]
          Length = 332

 Score =  344 bits (882), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 167/309 (54%), Positives = 225/309 (72%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L+E+ GQ +    LK+FIEAAK R EALDH L  GPPGLGKTT+A V+A ELGVN
Sbjct: 20  LRPQYLQEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANELGVN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGPVI K+GDL A+L +LE  DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G
Sbjct: 80  LKQTSGPVIEKSGDLVAILNDLEPGDVLFIDEIHRLPMAVEEVLYSAMEDFYIDIMIGSG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            ++RSV ++L  FTLI ATTR G+L+NPL+ RFGI   + +YE  DL  IV+R A++  +
Sbjct: 140 ETSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYEAGDLTEIVERTAEIFEM 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T +AA E+A+RSRGTPRIA RLL+RVRD+A++     I  +I D AL  L +D+ G D
Sbjct: 200 DITHKAAKELALRSRGTPRIANRLLKRVRDYAQIMGNGLIDDKITDQALSMLDVDQEGLD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GF+ RT  GR+   
Sbjct: 260 YVDQKILKTMIEVYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFVMRTRTGRVATR 319

Query: 322 IAWQHLGID 330
            A++HLG +
Sbjct: 320 KAYEHLGYE 328


>gi|218281324|ref|ZP_03487812.1| hypothetical protein EUBIFOR_00377 [Eubacterium biforme DSM 3989]
 gi|218217509|gb|EEC91047.1| hypothetical protein EUBIFOR_00377 [Eubacterium biforme DSM 3989]
          Length = 336

 Score =  343 bits (881), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 172/320 (53%), Positives = 226/320 (70%), Gaps = 1/320 (0%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           N+ + D     LRP++L E+ GQ E   NL VFI AA++R EALDHVLF GPPGLGKTTL
Sbjct: 8   NLQECDNFEKTLRPQSLNEYIGQSELKENLNVFIHAARSRNEALDHVLFYGPPGLGKTTL 67

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           A ++A E+  N ++ SGP I K+GDLAA+LT LE  DVLFIDEIHRL   VEE+LYPAME
Sbjct: 68  AYILANEMHGNLKTASGPSIEKSGDLAAILTTLEPGDVLFIDEIHRLPKQVEEVLYPAME 127

Query: 131 DFQLDLMVG-EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           D+ LD++VG +  +  +++INL  FTL+ ATTR G L+ PL+DRFGI  +L +Y ++DL+
Sbjct: 128 DYCLDIVVGKDSATVHNIRINLPPFTLVGATTRAGDLSAPLRDRFGIISQLEYYNLQDLE 187

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            IV R + +    +   A  EIA+RSRGTPRIA RL RRVRDFA+V +   I+ EIA  A
Sbjct: 188 KIVYRTSCVMNTEIDKNAVAEIALRSRGTPRIANRLFRRVRDFAQVYNEGVISSEIAKTA 247

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           L RL +D +G D +D +YL  I   F GGPVG+E I++ + E    +ED+ EPY++Q GF
Sbjct: 248 LDRLRVDHLGLDAVDHKYLKGIIERFKGGPVGLEAIASSIGEEPMTLEDVYEPYLLQIGF 307

Query: 310 IQRTPRGRLLMPIAWQHLGI 329
           I RTPRGR++ P A++HL I
Sbjct: 308 INRTPRGRIVTPKAYEHLQI 327


>gi|289550594|ref|YP_003471498.1| Holliday junction DNA helicase RuvB [Staphylococcus lugdunensis
           HKU09-01]
 gi|289180126|gb|ADC87371.1| Holliday junction DNA helicase RuvB [Staphylococcus lugdunensis
           HKU09-01]
          Length = 334

 Score =  343 bits (881), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 170/328 (51%), Positives = 230/328 (70%), Gaps = 3/328 (0%)

Query: 1   MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M DR  ++ ++  QED+     LRP  L+++ GQ    SNL+VFI+AAK R E LDHVL 
Sbjct: 1   MDDR--MVDQSFHQEDSAFEYSLRPTYLKQYIGQTTIKSNLEVFIQAAKLREEPLDHVLL 58

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTL+ ++A E+ VN R+ SGP + + GDLAA+L+ L+  DVLFIDEIHRLS 
Sbjct: 59  FGPPGLGKTTLSNIIANEMEVNIRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSS 118

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMEDF LD+++G+G  ARS++I+L  FTLI ATTR G LT PL+DRFG+ +R
Sbjct: 119 VVEEVLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLIGATTRAGSLTGPLRDRFGVHLR 178

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y   +LK I+ R A + G ++ DE+A E+A RSRGTPR+A RLL+RVRDF +V    
Sbjct: 179 LEYYNEHELKEIIIRTADVLGTSIDDESAVELAKRSRGTPRVANRLLKRVRDFQQVNGDD 238

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  E    AL  L +D+ G D +D + +  I   + GGPVG++TI+  + E R  IED+
Sbjct: 239 QIYIETTKKALKLLQVDEQGLDYIDHKMMNCIINQYQGGPVGLDTIAVSIGEERVTIEDV 298

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHL 327
            EP++IQ+GFI+RTPRGR     A++H 
Sbjct: 299 YEPFLIQKGFIERTPRGRKATAFAYEHF 326


>gi|322388648|ref|ZP_08062248.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           infantis ATCC 700779]
 gi|321140568|gb|EFX36073.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           infantis ATCC 700779]
          Length = 332

 Score =  343 bits (881), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 170/313 (54%), Positives = 222/313 (70%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E+ GQ +    L++FIEAAK R EALDHVL  GPPGLGKTT+A V+A ELGVN
Sbjct: 20  LRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANELGVN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGPVI KAGDL A+L +LE  DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G
Sbjct: 80  LKQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            ++RSV ++L  FTLI ATTR G+L+NPL+ RFGI   + +Y   DL  IV+R A +  +
Sbjct: 140 EASRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYTHADLTEIVERTADIFEM 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T EAA E+A+RSRGTPRIA RLL+RVRDFA++     I   I D AL  L +D  G D
Sbjct: 200 EITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGDGLIDDVITDKALTMLDVDHEGLD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GFI RT  GR+   
Sbjct: 260 YVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRSGRVATA 319

Query: 322 IAWQHLGIDIPHR 334
            A++HLG +   +
Sbjct: 320 KAYEHLGYEYSEK 332


>gi|288925421|ref|ZP_06419355.1| holliday junction DNA helicase RuvB [Prevotella buccae D17]
 gi|288337892|gb|EFC76244.1| holliday junction DNA helicase RuvB [Prevotella buccae D17]
          Length = 345

 Score =  343 bits (881), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 169/307 (55%), Positives = 222/307 (72%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP   ++F GQ +   NL++F+EAAK R E LDH L  GPPGLGKTTL+ ++A ELGV 
Sbjct: 23  LRPVHFQDFNGQQKVVENLEIFVEAAKFRGEPLDHTLLYGPPGLGKTTLSNIIANELGVG 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS +VEE LY AMED+++D+M+ +G
Sbjct: 83  FKITSGPVLDKPGDLAGILTSLEPNDVLFIDEIHRLSPVVEEYLYSAMEDYRIDIMIDKG 142

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSARS++I+L+ FTL+ ATTR G+LT PL+ RFGI + L +Y  E L  I++R A L  +
Sbjct: 143 PSARSIQIDLNPFTLVGATTRSGMLTAPLRARFGINMHLEYYAPEILMRIIKRSAYLLRV 202

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + DEAA EI+ RSRGTPRIA  LLRRVRDFA+V    TI   IA  AL  L ID+ G D
Sbjct: 203 PIDDEAAIEISRRSRGTPRIANSLLRRVRDFAQVKGNGTIDTVIAKMALQALNIDQYGLD 262

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           ++D + L  I   F GGPVG+ TI+  + E    +E++ EP++I +GFI+RTPRGR+   
Sbjct: 263 EIDNKILLTIIDKFRGGPVGVSTIATAIGEDSGTVEEVYEPFLIMEGFIKRTPRGRMATR 322

Query: 322 IAWQHLG 328
           +A++HLG
Sbjct: 323 LAYEHLG 329


>gi|306825930|ref|ZP_07459268.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           sp. oral taxon 071 str. 73H25AP]
 gi|304431862|gb|EFM34840.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           sp. oral taxon 071 str. 73H25AP]
          Length = 332

 Score =  343 bits (881), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 170/313 (54%), Positives = 221/313 (70%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E+ GQ +    L++FIEAAK R EALDHVL  GPPGLGKTT+A V+A ELGVN
Sbjct: 20  LRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANELGVN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGPVI KAGDL A+L +LE  DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G
Sbjct: 80  LKQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
             +RSV ++L  FTLI ATTR G+L+NPL+ RFGI   + +Y   DL  IV+R A +  +
Sbjct: 140 EGSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYAHADLTEIVERTADIFEM 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T EAA E+A+RSRGTPRIA RLL+RVRDFA++     I   I D AL  L +D  G D
Sbjct: 200 KITHEAAAELALRSRGTPRIANRLLKRVRDFAQIMGNGLIDDVITDKALTMLDVDHEGLD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GFI RT  GR+   
Sbjct: 260 YVDQKILHTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRSGRVATA 319

Query: 322 IAWQHLGIDIPHR 334
            A++HLG +   +
Sbjct: 320 KAYEHLGYEYSEK 332


>gi|307709955|ref|ZP_07646402.1| holliday junction DNA helicase RuvB [Streptococcus mitis SK564]
 gi|307619326|gb|EFN98455.1| holliday junction DNA helicase RuvB [Streptococcus mitis SK564]
          Length = 323

 Score =  343 bits (881), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 171/313 (54%), Positives = 220/313 (70%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E+ GQ +    L++FIEAAK R EALDHVL  GPPGLGKTT+A V+A ELGVN
Sbjct: 11  LRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANELGVN 70

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGPVI KAGDL A+L +LE  DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G
Sbjct: 71  LKQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAG 130

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
             +RSV + L  FTLI ATTR G+L+NPL+ RFGI   + +Y   DL  IV+R A +  +
Sbjct: 131 EGSRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYAHADLTEIVERTADIFEM 190

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T EAA E+A+RSRGTPRIA RLL+RVRDFA++    TI   I D AL  L +D  G D
Sbjct: 191 EITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGNGTIDDLITDKALTMLDVDHEGLD 250

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GFI RT  GR+   
Sbjct: 251 YVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRSGRVATA 310

Query: 322 IAWQHLGIDIPHR 334
            A+ HLG +   +
Sbjct: 311 KAYDHLGYEYNEK 323


>gi|224541318|ref|ZP_03681857.1| hypothetical protein CATMIT_00478 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525755|gb|EEF94860.1| hypothetical protein CATMIT_00478 [Catenibacterium mitsuokai DSM
           15897]
          Length = 330

 Score =  343 bits (881), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 170/328 (51%), Positives = 236/328 (71%), Gaps = 2/328 (0%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MDR+ +L  N   ED + SL RP + +E+ GQ +   NL+VF+ AAK R E LDHVLF G
Sbjct: 1   MDRD-VLDTNEHIEDEESSL-RPASFDEYVGQHDLKENLRVFVGAAKMRDETLDHVLFYG 58

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTT++ ++A E+G + + T+GP I K GDL ALLT+LE  DVLFIDEIHRL+ +V
Sbjct: 59  PPGLGKTTMSMIIANEMGTHIKITTGPSIEKTGDLVALLTSLEPGDVLFIDEIHRLNKVV 118

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILYPAMEDF +D+M+G+  + RSV+I+L  FTL+ ATTR G ++ PL+DRFGI  +L+
Sbjct: 119 EEILYPAMEDFCVDVMIGKDATTRSVRIDLPPFTLVGATTRAGDISAPLRDRFGIVAKLD 178

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y+ E+L+ I+ R +K+ G+ + +EA  E+A RSRGTPRIA RL RRVRDFA+    + I
Sbjct: 179 YYKDEELRDIISRTSKVYGMTMEEEAKMELARRSRGTPRIANRLFRRVRDFAQFYGDEII 238

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T++    AL RL +D +G D +D +YL  I   F GGPVG+E ++A + E R  +ED+ E
Sbjct: 239 TKDRTMQALDRLKVDNLGLDDVDHKYLLGIINRFQGGPVGLEALAASIGEERMTLEDVYE 298

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           PY++Q+G I+RT RGR+   +A++H  I
Sbjct: 299 PYLLQKGLIKRTSRGRIATNLAYRHFHI 326


>gi|293364311|ref|ZP_06611037.1| crossover junction endoribonuclease subunit B [Streptococcus oralis
           ATCC 35037]
 gi|307702723|ref|ZP_07639675.1| holliday junction DNA helicase RuvB [Streptococcus oralis ATCC
           35037]
 gi|291317157|gb|EFE57584.1| crossover junction endoribonuclease subunit B [Streptococcus oralis
           ATCC 35037]
 gi|307623839|gb|EFO02824.1| holliday junction DNA helicase RuvB [Streptococcus oralis ATCC
           35037]
          Length = 332

 Score =  343 bits (881), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 170/313 (54%), Positives = 222/313 (70%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E+ GQ +    L++FIEAAK R EALDHVL  GPPGLGKTT+A V+A ELGVN
Sbjct: 20  LRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANELGVN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGPVI KAGDL A+L +LE  DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G
Sbjct: 80  LKQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
             +RSV ++L  FTLI ATTR G+L+NPL+ RFGI   + +Y   DL  IV+R A +  +
Sbjct: 140 EGSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYAHADLTEIVERTADIFEM 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T EAA E+A+RSRGTPRIA RLL+RVRDFA++     I   I D AL  L +D+ G D
Sbjct: 200 EITHEAAAELALRSRGTPRIANRLLKRVRDFAQIMGDGLIDDVITDKALTMLDVDREGLD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GFI RT  GR+   
Sbjct: 260 YVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRSGRVATA 319

Query: 322 IAWQHLGIDIPHR 334
            A++HLG +   +
Sbjct: 320 KAYEHLGYEYSEK 332


>gi|255971608|ref|ZP_05422194.1| holliday junction DNA helicase RuvB [Enterococcus faecalis T1]
 gi|255974580|ref|ZP_05425166.1| holliday junction DNA helicase RuvB [Enterococcus faecalis T2]
 gi|256761915|ref|ZP_05502495.1| holliday junction DNA helicase RuvB [Enterococcus faecalis T3]
 gi|256956954|ref|ZP_05561125.1| holliday junction DNA helicase RuvB [Enterococcus faecalis DS5]
 gi|256960753|ref|ZP_05564924.1| holliday junction DNA helicase RuvB [Enterococcus faecalis Merz96]
 gi|256964043|ref|ZP_05568214.1| holliday junction DNA helicase RuvB [Enterococcus faecalis
           HIP11704]
 gi|257078630|ref|ZP_05572991.1| holliday junction DNA helicase RuvB [Enterococcus faecalis JH1]
 gi|257081406|ref|ZP_05575767.1| holliday junction DNA helicase RuvB [Enterococcus faecalis E1Sol]
 gi|257084065|ref|ZP_05578426.1| holliday junction DNA helicase RuvB [Enterococcus faecalis Fly1]
 gi|257088549|ref|ZP_05582910.1| holliday junction DNA helicase ruvB [Enterococcus faecalis CH188]
 gi|257417485|ref|ZP_05594479.1| holliday junction DNA helicase RuvB [Enterococcus faecalis AR01/DG]
 gi|257418784|ref|ZP_05595778.1| holliday junction DNA helicase ruvB [Enterococcus faecalis T11]
 gi|255962626|gb|EET95102.1| holliday junction DNA helicase RuvB [Enterococcus faecalis T1]
 gi|255967452|gb|EET98074.1| holliday junction DNA helicase RuvB [Enterococcus faecalis T2]
 gi|256683166|gb|EEU22861.1| holliday junction DNA helicase RuvB [Enterococcus faecalis T3]
 gi|256947450|gb|EEU64082.1| holliday junction DNA helicase RuvB [Enterococcus faecalis DS5]
 gi|256951249|gb|EEU67881.1| holliday junction DNA helicase RuvB [Enterococcus faecalis Merz96]
 gi|256954539|gb|EEU71171.1| holliday junction DNA helicase RuvB [Enterococcus faecalis
           HIP11704]
 gi|256986660|gb|EEU73962.1| holliday junction DNA helicase RuvB [Enterococcus faecalis JH1]
 gi|256989436|gb|EEU76738.1| holliday junction DNA helicase RuvB [Enterococcus faecalis E1Sol]
 gi|256992095|gb|EEU79397.1| holliday junction DNA helicase RuvB [Enterococcus faecalis Fly1]
 gi|256997361|gb|EEU83881.1| holliday junction DNA helicase ruvB [Enterococcus faecalis CH188]
 gi|257159313|gb|EEU89273.1| holliday junction DNA helicase RuvB [Enterococcus faecalis ARO1/DG]
 gi|257160612|gb|EEU90572.1| holliday junction DNA helicase ruvB [Enterococcus faecalis T11]
          Length = 332

 Score =  343 bits (880), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 172/325 (52%), Positives = 222/325 (68%), Gaps = 1/325 (0%)

Query: 7   LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           +LS    + +A I   LRP+ L ++ GQ +    L ++IEAAK R EALDH L  GPPGL
Sbjct: 1   MLSAASQEAEASIEKSLRPQFLAQYIGQDKVKQELTIYIEAAKNRNEALDHTLLYGPPGL 60

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTT+A V+A E+ VN R+TSGP I +AGDL A+L  LE  DVLFIDEIHRL  +VEE+L
Sbjct: 61  GKTTMAMVIANEMNVNIRTTSGPAIERAGDLVAILNELEPGDVLFIDEIHRLPRVVEEML 120

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           Y AMEDF +D+MVG+G +A  V   L  FTL+ ATTR G+L+ PL+DRFGI   + +Y+ 
Sbjct: 121 YSAMEDFYIDIMVGQGTTAHPVHFPLPPFTLVGATTRAGMLSAPLRDRFGIISHMEYYQE 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           +DLK IV R A +    + +E A EIA RSRGTPRIA RLL+RVRDFA+V     I R I
Sbjct: 181 QDLKEIVLRSADIFQTEIFEEGAFEIARRSRGTPRIANRLLKRVRDFAQVQSDGKIDRAI 240

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           AD AL  L +D  G D +D + L  +   +GGGPVG+ T+S  + E  + +ED+ EPY+I
Sbjct: 241 ADKALTLLQVDHQGLDYVDQKLLKTMIDLYGGGPVGLSTLSVNIGEETETVEDMYEPYLI 300

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGID 330
           Q+GFI+RTPRGR+  P A+ H G D
Sbjct: 301 QKGFIKRTPRGRIATPFAYAHFGYD 325


>gi|242242913|ref|ZP_04797358.1| Holliday junction DNA helicase B [Staphylococcus epidermidis
           W23144]
 gi|242233628|gb|EES35940.1| Holliday junction DNA helicase B [Staphylococcus epidermidis
           W23144]
          Length = 334

 Score =  343 bits (880), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 168/328 (51%), Positives = 230/328 (70%), Gaps = 2/328 (0%)

Query: 2   MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD+  ++ +    ED D+ L LRP  L+++ GQ    SNL+VFI+AAK R E LDHVL  
Sbjct: 1   MDKR-MVDQEFHNEDTDLELSLRPTQLKQYIGQSSIKSNLEVFIKAAKLRQEPLDHVLLF 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTL+ ++A E+ VN R+ SGP + + GDLAA+L+ L+  DVLFIDEIHRLS +
Sbjct: 60  GPPGLGKTTLSNIIANEMDVNIRTISGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSV 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDF LD+++G+G  ARS++++L  FTL+ ATTR G LT PL+DRFG+ +RL
Sbjct: 120 VEEVLYPAMEDFFLDIIIGKGDEARSIRLDLPPFTLVGATTRAGSLTGPLRDRFGVHLRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y   DLK I+ R A++ G  +  E+A E+A RSRGTPRIA RLL+RVRDF +V     
Sbjct: 180 EYYNENDLKEIITRTAEVLGTDIDKESALELARRSRGTPRIANRLLKRVRDFQQVNEDDQ 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I  E    AL  L +D+ G D +D + +  I   + GGPVG++TI+  + E R  IED+ 
Sbjct: 240 IYIETTKRALQLLQVDQQGLDYIDHKMMNCIINQYNGGPVGLDTIAVSIGEERVTIEDVY 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
           EP++IQ+GF++RTPRGR    +A++H  
Sbjct: 300 EPFLIQKGFLERTPRGRKATALAFEHFN 327


>gi|116629086|ref|YP_814258.1| Holliday junction DNA helicase B [Lactobacillus gasseri ATCC 33323]
 gi|238853829|ref|ZP_04644194.1| holliday junction DNA helicase RuvB [Lactobacillus gasseri 202-4]
 gi|122273916|sp|Q045Q2|RUVB_LACGA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|116094668|gb|ABJ59820.1| Holliday junction DNA helicase subunit RuvB [Lactobacillus gasseri
           ATCC 33323]
 gi|238833524|gb|EEQ25796.1| holliday junction DNA helicase RuvB [Lactobacillus gasseri 202-4]
          Length = 339

 Score =  343 bits (880), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 174/327 (53%), Positives = 229/327 (70%), Gaps = 1/327 (0%)

Query: 3   DREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           D E ++    ++ED  I L LRP+ L ++ GQ +  S +K++I+AAK R EALDHVL  G
Sbjct: 6   DEERIIGAESNEEDETIELSLRPQLLAQYIGQDKVKSEMKIYIKAAKQRDEALDHVLLYG 65

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA V+A E+GV+ +STSGP I KAGDL ALL+ L   DVLFIDEIHRL+  V
Sbjct: 66  PPGLGKTTLAFVIANEMGVHLKSTSGPAIEKAGDLVALLSELNPGDVLFIDEIHRLAKPV 125

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMEDF +D++VGEG +  +V + L  FTLI ATTR G L+ PL+DRFGI   + 
Sbjct: 126 EEVLYSAMEDFYIDIVVGEGQTTHAVHVPLPPFTLIGATTRAGQLSAPLRDRFGIIEHMQ 185

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y I+DL+ I+QR + +    +  EAA E+A RSRGTPR+A RLL+RVRDFAEV   + I
Sbjct: 186 YYSIDDLEKIIQRSSVVFNTKIDPEAAIELARRSRGTPRVANRLLKRVRDFAEVKGEEAI 245

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           +      +L  L +D  G DQ D + L M+  N+GGGPVGI+TI+A + E  D IE++ E
Sbjct: 246 SLATTKHSLHLLEVDDEGLDQTDRKLLRMMIENYGGGPVGIKTIAANVGEDTDTIEEVYE 305

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLG 328
           PY++Q+GFI RTPRGR +   A+  LG
Sbjct: 306 PYLLQKGFITRTPRGRSVTQKAYLQLG 332


>gi|42518564|ref|NP_964494.1| Holliday junction DNA helicase B [Lactobacillus johnsonii NCC 533]
 gi|227888711|ref|ZP_04006516.1| Holliday junction DNA helicase B [Lactobacillus johnsonii ATCC
           33200]
 gi|47606086|sp|P61533|RUVB_LACJO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|41582849|gb|AAS08460.1| Holliday junction DNA helicase RuvB [Lactobacillus johnsonii NCC
           533]
 gi|227850738|gb|EEJ60824.1| Holliday junction DNA helicase B [Lactobacillus johnsonii ATCC
           33200]
 gi|329666840|gb|AEB92788.1| Holliday junction DNA helicase RuvB [Lactobacillus johnsonii DPC
           6026]
          Length = 339

 Score =  343 bits (880), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 174/327 (53%), Positives = 229/327 (70%), Gaps = 1/327 (0%)

Query: 3   DREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           + E ++    S+ED  I L LRP+ L ++ GQ +  S +K++I+AAK R EALDHVL  G
Sbjct: 6   EEERIIGAESSEEDETIELSLRPQLLAQYIGQDKVKSEMKIYIKAAKQRDEALDHVLLYG 65

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA V+A E+GV+ +STSGP I KAGDL ALL+ L   DVLFIDEIHRL+  V
Sbjct: 66  PPGLGKTTLAFVIANEMGVHLKSTSGPAIEKAGDLVALLSELNPGDVLFIDEIHRLAKPV 125

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMEDF +D++VGEG +  +V + L  FTLI ATTR G L+ PL+DRFGI   + 
Sbjct: 126 EEVLYSAMEDFYIDIVVGEGQTTHAVHVPLPPFTLIGATTRAGQLSAPLRDRFGIIEHMQ 185

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y +EDL+ I+QR + +    +  EAA E+A RSRGTPR+A RLL+RVRDFAEV   + I
Sbjct: 186 YYSVEDLEKIIQRSSVVFNTKIDPEAAIELARRSRGTPRVANRLLKRVRDFAEVKGEEAI 245

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           +      +L  L +D  G DQ D + L M+  N+GGGPVGI+TI+A + E  D IE++ E
Sbjct: 246 SLVTTKHSLHLLEVDDEGLDQTDRKLLRMMIENYGGGPVGIKTIAANVGEDTDTIEEVYE 305

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLG 328
           PY++Q+GFI RTPRGR +   A+  LG
Sbjct: 306 PYLLQKGFITRTPRGRSVTQKAYLQLG 332


>gi|315612425|ref|ZP_07887338.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           sanguinis ATCC 49296]
 gi|315315406|gb|EFU63445.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           sanguinis ATCC 49296]
          Length = 332

 Score =  343 bits (880), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 170/313 (54%), Positives = 221/313 (70%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E+ GQ +    L++FIEAAK R EALDHVL  GPPGLGKTT+A V+A ELGVN
Sbjct: 20  LRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANELGVN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGPVI KAGDL A+L +LE  DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G
Sbjct: 80  LKQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
             +RSV ++L  FTLI ATTR G+L+NPL+ RFGI   + +Y   DL  IV+R A +  +
Sbjct: 140 EGSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYARADLTEIVERTADIFEM 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T EAA E+A+RSRGTPRIA RLL+RVRDFA++     I   I D AL  L +D  G D
Sbjct: 200 EITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGNGVIDDVITDKALTMLDVDHEGLD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GFI RT  GR+   
Sbjct: 260 YVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRSGRVATA 319

Query: 322 IAWQHLGIDIPHR 334
            A++HLG +   +
Sbjct: 320 KAYEHLGYEYNEK 332


>gi|292670919|ref|ZP_06604345.1| crossover junction endoribonuclease subunit B [Selenomonas noxia
           ATCC 43541]
 gi|292647540|gb|EFF65512.1| crossover junction endoribonuclease subunit B [Selenomonas noxia
           ATCC 43541]
          Length = 345

 Score =  343 bits (880), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 172/333 (51%), Positives = 232/333 (69%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           + + E L+S      D     LRPR L E+ GQ +  SNL  FI+AA +R EALDHVL  
Sbjct: 4   LYEDEELISFEEQAADGWQYSLRPRRLNEYIGQDKVKSNLSKFIQAALSRGEALDHVLLY 63

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A E+G NFR TS P I + GDLA+LLTNL+  D+LFIDEIHRLS  
Sbjct: 64  GPPGLGKTTLAAIIANEMGANFRQTSAPAIERQGDLASLLTNLQTNDILFIDEIHRLSHH 123

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILY AMED  +D+++G+GPSARS++++L+ FTLI ATT+ G L+ PL+DRFGI  RL
Sbjct: 124 VEEILYSAMEDHAIDIIIGKGPSARSLRLDLAPFTLIGATTKTGALSAPLRDRFGIQSRL 183

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y  E L  I++R A++  + +  E A EIA RSRGTPR+A R+L+RVRD A+VA  + 
Sbjct: 184 EYYTSEALLLIIERTAEILSVHIEREGALEIARRSRGTPRVANRILKRVRDIAQVAGEQM 243

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +++ +   AL  L +D+ G +  D   L ++ R F GGPVG++T++A LSE  + IED+ 
Sbjct: 244 VSKAVTIEALEALEVDEKGLENKDRHMLEVMIRKFSGGPVGLKTLAAALSEMVETIEDVY 303

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY+IQ GFI RT RGR++    ++H+GI  P 
Sbjct: 304 EPYLIQLGFIARTARGRIVTRGGYEHMGIPFPQ 336


>gi|182683239|ref|YP_001834986.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           CGSP14]
 gi|303255046|ref|ZP_07341122.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           BS455]
 gi|303259368|ref|ZP_07345345.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           SP-BS293]
 gi|303261123|ref|ZP_07347072.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           SP14-BS292]
 gi|303263451|ref|ZP_07349374.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           BS397]
 gi|303265743|ref|ZP_07351641.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           BS457]
 gi|303267826|ref|ZP_07353628.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           BS458]
 gi|238691188|sp|B2ISI4|RUVB_STRPS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|182628573|gb|ACB89521.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           CGSP14]
 gi|302597876|gb|EFL64946.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           BS455]
 gi|302637960|gb|EFL68446.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           SP14-BS292]
 gi|302639302|gb|EFL69760.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           SP-BS293]
 gi|302642522|gb|EFL72867.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           BS458]
 gi|302644651|gb|EFL74900.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           BS457]
 gi|302647224|gb|EFL77448.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           BS397]
          Length = 332

 Score =  343 bits (880), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 170/309 (55%), Positives = 218/309 (70%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E+ GQ +    L++FIEAAK R EALDHVL  GPPGLGKTT+A V+A ELGVN
Sbjct: 20  LRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANELGVN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGPVI KAGDL A+L  LE  DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G
Sbjct: 80  LKQTSGPVIEKAGDLVAILNELEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
             +RSV + L  FTLI ATTR G+L+NPL+ RFGI   + +Y   DL  IV+R A +  +
Sbjct: 140 EGSRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYAHADLTEIVERTADIFEM 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T EAA E+A+RSRGTPRIA RLL+RVRDFA++     I   I D AL  L +D  G D
Sbjct: 200 EITHEAASELALRSRGTPRIANRLLKRVRDFAQIVGNGVIDDVITDKALTMLDVDHEGLD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GFI RT  GR+   
Sbjct: 260 YVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRSGRMATA 319

Query: 322 IAWQHLGID 330
            A++HLG +
Sbjct: 320 KAYEHLGYE 328


>gi|257087894|ref|ZP_05582255.1| holliday junction DNA helicase RuvB [Enterococcus faecalis D6]
 gi|256995924|gb|EEU83226.1| holliday junction DNA helicase RuvB [Enterococcus faecalis D6]
          Length = 332

 Score =  343 bits (880), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 172/325 (52%), Positives = 222/325 (68%), Gaps = 1/325 (0%)

Query: 7   LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           +LS    + +A I   LRP+ L ++ GQ +    L ++IEAAK R EALDH L  GPPGL
Sbjct: 1   MLSAASQEAEASIEKSLRPQFLAQYIGQDKVKQELTIYIEAAKNRNEALDHTLLYGPPGL 60

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTT+A V+A E+ VN R+TSGP I +AGDL A+L  LE  DVLFIDEIHRL  +VEE+L
Sbjct: 61  GKTTMAMVIANEMNVNIRTTSGPAIERAGDLVAILNELEPGDVLFIDEIHRLPRVVEEML 120

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           Y AMEDF +D+MVG+G +A  V   L  FTL+ ATTR G+L+ PL+DRFGI   + +Y+ 
Sbjct: 121 YSAMEDFYIDIMVGQGTTAHPVHFPLPPFTLVGATTRAGMLSAPLRDRFGIISHMEYYQE 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           +DLK IV R A +    + +E A EIA RSRGTPRIA RLL+RVRDFA+V     I R I
Sbjct: 181 QDLKEIVLRSADIFQTEIFEEGAFEIARRSRGTPRIANRLLKRVRDFAQVQSDGKIDRAI 240

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           AD AL  L +D  G D +D + L  +   +GGGPVG+ T+S  + E  + +ED+ EPY+I
Sbjct: 241 ADKALTLLQVDHQGLDYVDQKLLKTMIDLYGGGPVGLSTLSVNIGEETETVEDMYEPYLI 300

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGID 330
           Q+GFI+RTPRGR+  P A+ H G D
Sbjct: 301 QKGFIKRTPRGRIATPFAYAHFGYD 325


>gi|169350137|ref|ZP_02867075.1| hypothetical protein CLOSPI_00879 [Clostridium spiroforme DSM 1552]
 gi|169292920|gb|EDS75053.1| hypothetical protein CLOSPI_00879 [Clostridium spiroforme DSM 1552]
          Length = 330

 Score =  343 bits (880), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 170/330 (51%), Positives = 232/330 (70%), Gaps = 2/330 (0%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M R  +L  N+S+ED   S LRP + +E+ GQ     NLKVF+ AAK R E LDHVL  G
Sbjct: 1   MTRNEVLDANISEEDE--SGLRPSSFDEYVGQTSLKENLKVFVGAAKLRDEPLDHVLLYG 58

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTT++ ++A E+G N + T+GP I K GDL A+LT LE  DVLFIDEIHRL+ +V
Sbjct: 59  PPGLGKTTMSMIIANEMGTNIKITTGPSIEKTGDLVAILTALEPGDVLFIDEIHRLNKVV 118

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILYPAMEDF +D+++G+  S RSV+I+L  FTL+ ATTR G L+ PL+DRFGI  +L 
Sbjct: 119 EEILYPAMEDFCVDVVIGKEASTRSVRIDLPPFTLVGATTRAGDLSAPLRDRFGIVSKLE 178

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y  ++LK I+ R +++  + + D+A   +AMRSRGTPRIA RL RRVRDFA+    + I
Sbjct: 179 YYSEDELKVIIDRTSRVYQMPMDDDAKTALAMRSRGTPRIANRLFRRVRDFAQFNGEEII 238

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T+E    AL RL +D++G D++D +YL  I   F GGPVG+E+++  + E    +ED+ E
Sbjct: 239 TKERTVEALDRLKVDRLGLDEVDHKYLLGIIHRFKGGPVGLESLAVSIGEEPRTLEDVYE 298

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           PY++Q G I+RTPRGR+    A++HL I+ 
Sbjct: 299 PYLLQIGLIKRTPRGRIATYEAYKHLNIEF 328


>gi|322377193|ref|ZP_08051685.1| holliday junction DNA helicase RuvB [Streptococcus sp. M334]
 gi|321281906|gb|EFX58914.1| holliday junction DNA helicase RuvB [Streptococcus sp. M334]
          Length = 332

 Score =  343 bits (879), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 170/309 (55%), Positives = 219/309 (70%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E+ GQ +    L++FIEAAK R EALDHVL  GPPGLGKTT+A V+A ELGVN
Sbjct: 20  LRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANELGVN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGPVI KAGDL A+L +LE  DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G
Sbjct: 80  LKQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
             +RSV + L  FTLI ATTR G+L+NPL+ RFGI   + +Y   DL  IV+R A +  +
Sbjct: 140 EGSRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYAHADLTEIVERTADIFEM 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T EAA E+A+RSRGTPRIA RLL+RVRDFA++     I   I D AL  L +D  G D
Sbjct: 200 EITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGNGVIDDVITDKALTMLDVDHEGLD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GFI RT  GR+   
Sbjct: 260 YVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRSGRVATA 319

Query: 322 IAWQHLGID 330
            A++HLG +
Sbjct: 320 KAYEHLGYE 328


>gi|212696228|ref|ZP_03304356.1| hypothetical protein ANHYDRO_00764 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676857|gb|EEB36464.1| hypothetical protein ANHYDRO_00764 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 337

 Score =  343 bits (879), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 164/308 (53%), Positives = 224/308 (72%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L ++ GQ +A   LK+FIE++  R EALDHVL  GPPGLGKTTL+ ++A ELGVN
Sbjct: 24  IRPKWLNDYIGQDKAKEKLKIFIESSLKREEALDHVLLQGPPGLGKTTLSNIIANELGVN 83

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGP I +  DLA++LTNL+  DVLFIDEIHR++  VEEILYPAMEDF LD++VG+G
Sbjct: 84  IRITSGPAIERPSDLASILTNLDKGDVLFIDEIHRINRSVEEILYPAMEDFALDIIVGKG 143

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+A+S++I+L +FTL+ ATTR G+L+ PL+DRFG+ + LN Y+ +DL  IV+R A +  +
Sbjct: 144 PNAQSIRIDLEKFTLVGATTRAGMLSAPLRDRFGVLLSLNLYDTKDLTKIVKRSADILDI 203

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + ++ A EIA RSRGTPRIA RLL+RVRD+A V   + I  E +   L  L +D MG D
Sbjct: 204 PIDEKGAFEIARRSRGTPRIANRLLKRVRDYAIVKKDEIIDYETSCEGLELLEVDPMGLD 263

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + +  +  NF GGPVG++TI+A        IED+ EPY++Q GF+ RTPRGR+L  
Sbjct: 264 NMDKKIVLTMHENFDGGPVGVDTIAASTGIENVTIEDVYEPYLLQIGFLTRTPRGRILTK 323

Query: 322 IAWQHLGI 329
            A++H G+
Sbjct: 324 KAYEHYGL 331


>gi|260424675|ref|ZP_05732906.2| holliday junction DNA helicase RuvB [Dialister invisus DSM 15470]
 gi|260402788|gb|EEW96335.1| holliday junction DNA helicase RuvB [Dialister invisus DSM 15470]
          Length = 361

 Score =  343 bits (879), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 171/316 (54%), Positives = 224/316 (70%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           S+ D     +RP+ L ++ GQ     NL V+I AA++R EALDHVL  GPPGLGKTT+A+
Sbjct: 30  SRRDEWQQTIRPQRLSDYIGQSTFKENLHVYISAARSRKEALDHVLLYGPPGLGKTTMAK 89

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           +++ ELGV F+ TSGP I + GDLAA+L+ L++ DVLFIDEIHRL+  VEEILYPAMEDF
Sbjct: 90  IISNELGVQFKVTSGPAIGRPGDLAAILSTLQEHDVLFIDEIHRLNRSVEEILYPAMEDF 149

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            LD+++G+G  A S++I L  FTLI ATTR G L+ PL+DRFGI   + FY  ++LK I+
Sbjct: 150 ALDIVMGKGAGANSIRIELPPFTLIGATTRAGALSAPLRDRFGIINHMQFYTADELKHIL 209

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R A +  + + +  A EIA RSRGTPRIA RLL+R+RDFA+V     I++EIA  +L  
Sbjct: 210 IRAAGILNIKIEETGAEEIARRSRGTPRIANRLLKRIRDFAQVKGEGVISQEIAADSLSA 269

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D +G D +D   L  I + F GGPVGI+TISA +SE R  IED+ EPY++Q GFI R
Sbjct: 270 LYVDDIGLDLIDREVLKAIIQKFNGGPVGIDTISASISEERATIEDICEPYLMQIGFISR 329

Query: 313 TPRGRLLMPIAWQHLG 328
           TPRGR+    A+ HLG
Sbjct: 330 TPRGRIATKAAYDHLG 345


>gi|332701177|ref|ZP_08421265.1| Holliday junction ATP-dependent DNA helicase ruvB [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332551326|gb|EGJ48370.1| Holliday junction ATP-dependent DNA helicase ruvB [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 322

 Score =  343 bits (879), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 168/306 (54%), Positives = 222/306 (72%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR+L++F GQ +  +NL V++ AA+    A+DH LF G PGLGKTTLAQ++A E+GVN
Sbjct: 13  IRPRSLDDFVGQDDLRANLSVYLSAAREGRRAIDHTLFYGNPGLGKTTLAQIMASEMGVN 72

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
             STSGPV+ ++GDLAA+LTNL   D LFIDEIHR+   VEE+LYPAMEDF++DL++G+G
Sbjct: 73  LVSTSGPVLERSGDLAAILTNLGRHDFLFIDEIHRMPANVEEVLYPAMEDFKIDLIIGQG 132

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P AR+VKI L  FTL+ ATTR+GLLT+PL+DRFG   RL FY  E L TI++R A + G 
Sbjct: 133 PGARTVKIELEPFTLVGATTRLGLLTSPLRDRFGCIFRLEFYSPEQLATIIRRAAGILGT 192

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
           AV+D  A  I  RSRGTPRIA RLLRRVRDFA     + I  E+A  AL R+ +D  G D
Sbjct: 193 AVSDAGAMTIGRRSRGTPRIANRLLRRVRDFAVFQGKQIIDEELASQALDRMDVDDSGLD 252

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L+++  ++ GGPVG++T++   SE    IED+ EPY+IQ GF++RT RGR+   
Sbjct: 253 YMDRKILSVVINHYQGGPVGLKTLAVACSEEVRTIEDIYEPYLIQCGFLKRTSRGRVATA 312

Query: 322 IAWQHL 327
            A+ HL
Sbjct: 313 KAYAHL 318


>gi|326799875|ref|YP_004317694.1| Holliday junction ATP-dependent DNA helicase ruvB [Sphingobacterium
           sp. 21]
 gi|326550639|gb|ADZ79024.1| Holliday junction ATP-dependent DNA helicase ruvB [Sphingobacterium
           sp. 21]
          Length = 340

 Score =  343 bits (879), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 172/321 (53%), Positives = 231/321 (71%), Gaps = 1/321 (0%)

Query: 9   SRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           + ++S+ + ++  +LRP+  E+FTGQ +   NL++F++AAK R EALDHVL  GPPGLGK
Sbjct: 9   AEHLSKTEKEVEKVLRPQAFEDFTGQHKILENLRIFVQAAKLRGEALDHVLLHGPPGLGK 68

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127
           TTL+ ++A E+GV  + TSGPV+ K GDLA LLTNLE  D+LFIDEIHRLS +VEE LY 
Sbjct: 69  TTLSHIIANEMGVGIKITSGPVLDKPGDLAGLLTNLEVGDILFIDEIHRLSPLVEEYLYS 128

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           AMEDF++D+M+  GP+ARSV+++LS FTL+ ATTR GLLT PL+ RFGI  RL +Y+ + 
Sbjct: 129 AMEDFKIDIMLETGPNARSVQLSLSPFTLVGATTRSGLLTAPLRARFGINARLQYYDAKL 188

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           L TIV R A +    +++E A EIA RSRGTPRIA  LLRR RDFA++     I  EIA 
Sbjct: 189 LTTIVLRSAGILRTPISEEGAYEIARRSRGTPRIANALLRRTRDFAQIKGNGNIDTEIAQ 248

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
            AL  L +D+ G D++D R L  I   F GGPVG++TI+  + E    IE++ EP++IQ+
Sbjct: 249 YALNALNVDEHGLDEMDNRILLTIIDKFKGGPVGLKTIATAVGEDEGTIEEVYEPFLIQE 308

Query: 308 GFIQRTPRGRLLMPIAWQHLG 328
           G+I RT RGR    +A++HLG
Sbjct: 309 GYIMRTSRGRECTELAYKHLG 329


>gi|237740314|ref|ZP_04570795.1| holliday junction DNA helicase ruvB [Fusobacterium sp. 2_1_31]
 gi|229422331|gb|EEO37378.1| holliday junction DNA helicase ruvB [Fusobacterium sp. 2_1_31]
          Length = 338

 Score =  343 bits (879), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 162/309 (52%), Positives = 225/309 (72%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP++ +E+ GQ      + + I+AA+ R   +DH+L  GPPGLGKTTLA V+A E+  N
Sbjct: 20  LRPKSFDEYIGQENLKEKMSISIKAAQKRNMTVDHILLYGPPGLGKTTLAGVIANEMQAN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGP++ KAGDLAA+LT+LE+ D+LFIDEIHRL+  VEEILYPAMED +LD+++G+G
Sbjct: 80  LKITSGPILEKAGDLAAILTSLEENDILFIDEIHRLNNTVEEILYPAMEDGELDIIIGKG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSA+S++I L  FTLI ATTR GLL+ PL+DRFG+  ++ +Y I+++K I+ RGAK+ G+
Sbjct: 140 PSAKSIRIELPPFTLIGATTRAGLLSAPLRDRFGVSHKMEYYNIDEIKAIIIRGAKILGV 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +++E A EI+ RSRGTPRIA RLL+RVRD+ E+    TI    A  AL  L +D  G D
Sbjct: 200 KISEEGAIEISKRSRGTPRIANRLLKRVRDYCEIKGNGTIDVLSAKNALDMLGVDSSGLD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           +LD   +  I  N+ GGPVGIET+S  L E R  +E++ EPY+++ GF++RT RGR++ P
Sbjct: 260 ELDRNIINSIIENYDGGPVGIETLSLLLGEDRRTLEEVYEPYLVKIGFLKRTNRGRVVTP 319

Query: 322 IAWQHLGID 330
            A+QH   D
Sbjct: 320 KAYQHFKKD 328


>gi|323343744|ref|ZP_08083971.1| crossover junction ATP-dependent DNA helicase RuvB [Prevotella
           oralis ATCC 33269]
 gi|323095563|gb|EFZ38137.1| crossover junction ATP-dependent DNA helicase RuvB [Prevotella
           oralis ATCC 33269]
          Length = 344

 Score =  343 bits (879), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 169/307 (55%), Positives = 223/307 (72%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP    +F+GQ     NL+VF+EAAK R E LDH L  GPPGLGKTTL+ ++A ELGV 
Sbjct: 23  LRPLKFTDFSGQKNVVENLEVFVEAAKYRGEPLDHTLLHGPPGLGKTTLSNIIANELGVG 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS +VEE LY AMED+++D+M+ +G
Sbjct: 83  FKITSGPVLDKPGDLAGILTSLEPNDVLFIDEIHRLSPVVEEYLYSAMEDYRIDIMIDKG 142

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSARS++I+L+ FTL+ ATTR GLLT PL+ RFGI + L +YE + L  I++R A +  +
Sbjct: 143 PSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGINLHLEYYEPDTLTKILKRSAGILKV 202

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + D+AA EI+ RSRGTPRIA  LLRRVRDFA+V  +  I  +IA  AL  L ID+ G D
Sbjct: 203 PIDDDAAIEISRRSRGTPRIANALLRRVRDFAQVKGSGRINTDIARFALKALNIDRYGLD 262

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           ++D + L  I   F GGPVGI TI+  + E    +E++ EP++I +GFI+RTPRGR+   
Sbjct: 263 EIDNKILLTIIDKFRGGPVGISTIATAIGEDTGTVEEVYEPFLIMEGFIKRTPRGRMATA 322

Query: 322 IAWQHLG 328
           +A++HLG
Sbjct: 323 LAFEHLG 329


>gi|307708099|ref|ZP_07644567.1| holliday junction DNA helicase RuvB [Streptococcus mitis NCTC
           12261]
 gi|307615884|gb|EFN95089.1| holliday junction DNA helicase RuvB [Streptococcus mitis NCTC
           12261]
          Length = 332

 Score =  343 bits (879), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 170/313 (54%), Positives = 220/313 (70%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E+ GQ +    L++FIEAAK R EALDHVL  GPPGLGKTT+A V+A ELGVN
Sbjct: 20  LRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANELGVN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGPVI KAGDL A+L +LE  DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G
Sbjct: 80  LKQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
             +RSV + L  FTLI ATTR G+L+NPL+ RFGI   + +Y   DL  IV+R A +  +
Sbjct: 140 EGSRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYAHADLTEIVERTADIFEM 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T EAA E+A+RSRGTPRIA RLL+RVRDFA++     I   I D AL  L +D  G D
Sbjct: 200 EITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGNGVIDDLITDKALTMLDVDHEGLD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GFI RT  GR+   
Sbjct: 260 YVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRSGRVATA 319

Query: 322 IAWQHLGIDIPHR 334
            A++HLG +   +
Sbjct: 320 KAYEHLGYEYSEK 332


>gi|212704639|ref|ZP_03312767.1| hypothetical protein DESPIG_02702 [Desulfovibrio piger ATCC 29098]
 gi|212672038|gb|EEB32521.1| hypothetical protein DESPIG_02702 [Desulfovibrio piger ATCC 29098]
          Length = 377

 Score =  343 bits (879), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 169/308 (54%), Positives = 231/308 (75%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR+L++F GQ E  +NL+V++ AA+ R  ALDH LF G PGLGKTTLAQ++A ELGVN
Sbjct: 67  VRPRSLDDFIGQEELRANLRVYLGAARERGGALDHTLFYGNPGLGKTTLAQIMAAELGVN 126

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
              TSGPV+ ++GDLAA+LTNL   D+LF+DEIHR+ I VEE+LYPAMEDF+LDL++G+G
Sbjct: 127 LVCTSGPVLERSGDLAAILTNLSRNDILFVDEIHRMPIAVEEVLYPAMEDFKLDLVIGQG 186

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+AR+VKI+L  FTL+ ATTR+GL++ PL+ RFGI  +L FY   +L  +V R A + G+
Sbjct: 187 PAARTVKIDLEPFTLVGATTRMGLISAPLRGRFGILSQLEFYTPAELARVVLRTAHILGI 246

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
           AVT + A EI  RSRGTPRIA RLLRRVRDFA +     IT E A  AL R+ +D++G D
Sbjct: 247 AVTPDGAEEIGRRSRGTPRIANRLLRRVRDFAMMGGHDVITAEQAAEALRRMDVDEIGLD 306

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           ++D R L ++  ++ GGPVG++T++   SE    IE++ EPY+IQ G ++RTPRGR++  
Sbjct: 307 RMDRRLLEVMITHYDGGPVGLKTLAVACSEEVRTIEEIYEPYLIQCGLLKRTPRGRMVTA 366

Query: 322 IAWQHLGI 329
            A++HL +
Sbjct: 367 KAYRHLNL 374


>gi|261749237|ref|YP_003256922.1| Holliday junction DNA helicase RuvB [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
 gi|261497329|gb|ACX83779.1| Holliday junction DNA helicase RuvB [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
          Length = 321

 Score =  343 bits (879), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 172/306 (56%), Positives = 219/306 (71%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           L P+  ++F GQ +   NLK+FI+AAK R E+LDH+LF GPPGLGKTTLA +VA ELGV 
Sbjct: 9   LNPKKFQDFVGQQDILDNLKIFIQAAKKRKESLDHILFHGPPGLGKTTLAHIVANELGVK 68

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
              TSG V+ K GDLA LL +L   DVLFIDEIHRLS IVEE LY AME++++D+++  G
Sbjct: 69  ITVTSGSVLDKPGDLAGLLIHLNSNDVLFIDEIHRLSPIVEEYLYSAMENYKIDIIIDSG 128

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            +ARSV+I+LS FTLI ATTR GLLT P++ RFGI  RL +Y  E LK IV R AK   +
Sbjct: 129 SNARSVQIDLSPFTLIGATTRSGLLTAPMRSRFGINGRLTYYRKELLKNIVTRRAKTLNI 188

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T+EA+ EIA RSRGTPRIA  LLRRVRDFA++    TI   I D  L  L +DK G D
Sbjct: 189 PITEEASYEIANRSRGTPRIANALLRRVRDFAQIKGNGTIDIHICDLGLQALNVDKHGLD 248

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           ++D R L  I  +F GGPVGI TI+  ++E  D IE++ EP++IQ+G++ RTPRGR    
Sbjct: 249 EMDNRILASIIDHFKGGPVGINTIATAVNENPDTIEEVYEPFLIQEGYLVRTPRGRKATL 308

Query: 322 IAWQHL 327
           +A++HL
Sbjct: 309 LAYKHL 314


>gi|332077561|gb|EGI88022.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           GA41301]
          Length = 332

 Score =  343 bits (879), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 170/313 (54%), Positives = 219/313 (69%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E+ GQ +    L++FIEAAK R EALDHVL  GPPGLGKTT+A V+A ELGVN
Sbjct: 20  LRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANELGVN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGPVI KAGDL A+L  LE  DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G
Sbjct: 80  LKQTSGPVIEKAGDLVAILNELEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
             +RSV + L  FTLI ATTR G+L+NPL+ RFGI   + +Y   DL  IV+R A +  +
Sbjct: 140 EGSRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYAHADLTEIVERTADIFEM 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T EAA E+A+RSRGTPRIA RLL+RVRDFA++     I   I D AL  L +D  G D
Sbjct: 200 EITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGNGVIDDVITDKALTMLDVDHEGLD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GFI RT  GR+   
Sbjct: 260 YVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRSGRVATA 319

Query: 322 IAWQHLGIDIPHR 334
            A++HLG +   +
Sbjct: 320 KAYEHLGYEYSEK 332


>gi|332204266|gb|EGJ18331.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           GA47901]
          Length = 323

 Score =  343 bits (879), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 170/309 (55%), Positives = 218/309 (70%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E+ GQ +    L++FIEAAK R EALDHVL  GPPGLGKTT+A V+A ELGVN
Sbjct: 11  LRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANELGVN 70

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGPVI KAGDL A+L  LE  DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G
Sbjct: 71  LKQTSGPVIEKAGDLVAILNELEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAG 130

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
             +RSV + L  FTLI ATTR G+L+NPL+ RFGI   + +Y   DL  IV+R A +  +
Sbjct: 131 EGSRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYAHADLTEIVERTADIFEM 190

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T EAA E+A+RSRGTPRIA RLL+RVRDFA++     I   I D AL  L +D  G D
Sbjct: 191 EITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGNGVIDDVITDKALTMLDVDHEGLD 250

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GFI RT  GR+   
Sbjct: 251 YVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRSGRMATA 310

Query: 322 IAWQHLGID 330
            A++HLG +
Sbjct: 311 KAYEHLGYE 319


>gi|222152256|ref|YP_002561431.1| Holliday junction DNA helicase RuvB [Streptococcus uberis 0140J]
 gi|254767443|sp|B9DSU1|RUVB_STRU0 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|222113067|emb|CAR40423.1| Holliday junction DNA helicase, subunit B [Streptococcus uberis
           0140J]
          Length = 334

 Score =  343 bits (879), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 165/306 (53%), Positives = 222/306 (72%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L+E+ GQ +  + L +FIEAAK R E+LDHVL  GPPGLGKTT+A V+A ELGVN
Sbjct: 20  LRPQYLKEYIGQDKVKNQLSIFIEAAKLRDESLDHVLLFGPPGLGKTTMAFVIANELGVN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGP I KAGDL A+L +LE  DVLFIDEIHR+ + VEE+LY AMEDF +D+M+G G
Sbjct: 80  LKQTSGPAIEKAGDLVAILNDLEPGDVLFIDEIHRMPMAVEEVLYSAMEDFYIDIMIGAG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            ++RSV + L  FTLI ATTR G+L+NPL+ RFGI   + +Y+++DL  IV+R + +  +
Sbjct: 140 DTSRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYQVDDLTEIVERTSDIFEM 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
           A+  EAA E+A RSRGTPRIA RLL+RVRD+A++     IT+E+ D AL  L +D  G D
Sbjct: 200 AIVHEAALELAKRSRGTPRIANRLLKRVRDYAQIMGDGVITKEMTDKALEMLDVDHEGLD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   + GGPVG+ T+S  ++E RD +ED+ EPY+IQ+GFI RT  GR+   
Sbjct: 260 YVDQKILRTMIEMYNGGPVGLGTLSVNIAEERDTVEDMYEPYLIQKGFIMRTRTGRVATE 319

Query: 322 IAWQHL 327
            A++HL
Sbjct: 320 KAYRHL 325


>gi|322386388|ref|ZP_08060018.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           cristatus ATCC 51100]
 gi|321269612|gb|EFX52542.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           cristatus ATCC 51100]
          Length = 332

 Score =  342 bits (878), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 167/309 (54%), Positives = 223/309 (72%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L+E+ GQ +    LK+F EAAK R EALDH L  GPPGLGKTT+A V+A ELGVN
Sbjct: 20  LRPQYLQEYIGQDKVKEQLKIFTEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANELGVN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGPVI K+GDL A+L +LE  DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G
Sbjct: 80  LKQTSGPVIEKSGDLVAILNDLEPGDVLFIDEIHRLPMAVEEVLYSAMEDFYIDIMIGTG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            ++RSV + L  FTLI ATTR G+L+NPL+ RFGI   + +YE  DL  IV+R A++  +
Sbjct: 140 ETSRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYEASDLTEIVERTAEIFEM 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T EAA E+A+RSRGTPRIA RLL+RVRD+A++     I  +I D AL  L +D+ G D
Sbjct: 200 DITHEAARELALRSRGTPRIANRLLKRVRDYAQIMGNGLIDDKITDQALSMLDVDQEGLD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GF+ RT  GR+   
Sbjct: 260 YVDQKILRTMIEVYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFVMRTRTGRVATR 319

Query: 322 IAWQHLGID 330
            A++HLG +
Sbjct: 320 KAYEHLGYE 328


>gi|254518552|ref|ZP_05130608.1| holliday junction DNA helicase RuvB [Clostridium sp. 7_2_43FAA]
 gi|226912301|gb|EEH97502.1| holliday junction DNA helicase RuvB [Clostridium sp. 7_2_43FAA]
          Length = 341

 Score =  342 bits (878), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 170/314 (54%), Positives = 227/314 (72%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           ED     LRP++L E+ GQ +    L +FI+AA+ R EALDHVL  GPPGLGKTTLA ++
Sbjct: 12  EDGSSLSLRPQSLNEYIGQDKVKERLNIFIKAAQNRDEALDHVLLYGPPGLGKTTLANII 71

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A+E+    + TSGP I +AGDLAA+LT L+D DVLFIDEIHRL+  VEEILYPAMED+ L
Sbjct: 72  AKEMDGELKITSGPAIERAGDLAAILTTLKDNDVLFIDEIHRLNRNVEEILYPAMEDYVL 131

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D+++G+G +A+S++++L +FTLI ATTR+G+LT+PL+DRFG+   + +Y  E LK I+ R
Sbjct: 132 DIVIGKGAAAKSIRLDLPKFTLIGATTRIGMLTSPLRDRFGVLCDMQYYTEEQLKEIIVR 191

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A +    +T+E A E+A RSRGTPRIA RLL+RVRD+A+V     I+ + A AAL  L 
Sbjct: 192 SAFVLECNITEEGAYELARRSRGTPRIANRLLKRVRDYAQVYSDSLISYKEAKAALELLE 251

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D  GFD++D + L  I  NF GGPVGIET+S  + E    IED+ EPY++Q GFI RT 
Sbjct: 252 VDSKGFDRVDNKILEAIIDNFNGGPVGIETLSYFIGEELGTIEDVYEPYLLQTGFIVRTS 311

Query: 315 RGRLLMPIAWQHLG 328
           RGR+    A++HLG
Sbjct: 312 RGRVATDKAYEHLG 325


>gi|288800395|ref|ZP_06405853.1| holliday junction DNA helicase RuvB [Prevotella sp. oral taxon 299
           str. F0039]
 gi|288332608|gb|EFC71088.1| holliday junction DNA helicase RuvB [Prevotella sp. oral taxon 299
           str. F0039]
          Length = 345

 Score =  342 bits (878), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 165/307 (53%), Positives = 223/307 (72%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP    +F+GQ +   NL++F+EAAK R E LDH L  GPPGLGKTTL+ ++A ELGV 
Sbjct: 23  LRPPKFADFSGQQKVVDNLQIFVEAAKYRGEPLDHTLLHGPPGLGKTTLSNIIANELGVG 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS +VEE LY AMED+++D+M+ +G
Sbjct: 83  FKITSGPVLDKPGDLAGILTSLEPNDVLFIDEIHRLSAVVEEYLYSAMEDYRIDIMIDKG 142

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSARS++I+L+ FTL+ ATTR GLLT PL+ RFGI + L +Y+ + +  I++R A +  +
Sbjct: 143 PSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGINLHLEYYDNDTIARIIKRSASIIRV 202

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + D+AA EIA RSRGTPRIA  LLRRVRDFA+V  +  I  +IA  AL  L ID+ G D
Sbjct: 203 PIDDDAAAEIAGRSRGTPRIANALLRRVRDFAQVKGSGRINIDIAQYALSALNIDQYGLD 262

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           ++D + L  I   F GGPVG+ TI+  + E    +E++ EP++I +GFI+RTPRGR+   
Sbjct: 263 EIDNKILLTIIDKFKGGPVGVSTIATAIGEDSGTVEEVYEPFLIMEGFIKRTPRGRMATE 322

Query: 322 IAWQHLG 328
           +A++H G
Sbjct: 323 LAYRHFG 329


>gi|149011129|ref|ZP_01832434.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           SP19-BS75]
 gi|147764765|gb|EDK71695.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           SP19-BS75]
          Length = 332

 Score =  342 bits (878), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 170/309 (55%), Positives = 219/309 (70%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E+ GQ +    L++FIEAAK R EALDHVL  GPPGLGKTT+A V+A ELGVN
Sbjct: 20  LRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANELGVN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGPVI KAGDL A+L +LE  DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G
Sbjct: 80  LKQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
             +RSV + L  FTLI ATTR G+L+NPL+ RFGI   + +Y   DL  IV+R A +  +
Sbjct: 140 EGSRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYAHADLTEIVERTADIFEM 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T EAA E+A+RSRGTPRIA RLL+RVRDFA++     I   I D AL  L +D  G D
Sbjct: 200 EITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGNGVIDDLITDKALTMLDVDHEGLD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GFI RT  GR+   
Sbjct: 260 YVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRSGRVATT 319

Query: 322 IAWQHLGID 330
            A++HLG +
Sbjct: 320 KAYEHLGYE 328


>gi|294782592|ref|ZP_06747918.1| holliday junction DNA helicase RuvB [Fusobacterium sp. 1_1_41FAA]
 gi|294481233|gb|EFG29008.1| holliday junction DNA helicase RuvB [Fusobacterium sp. 1_1_41FAA]
          Length = 338

 Score =  342 bits (878), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 161/309 (52%), Positives = 225/309 (72%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP++ +E+ GQ      + + I+AA+ R   +DH+L  GPPGLGKTTLA V+A E+  N
Sbjct: 20  LRPKSFDEYIGQENLKEKMNISIKAAQKRNMTVDHILLYGPPGLGKTTLAGVIANEMQAN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGP++ KAGDLAA+LT+LE+ D+LFIDEIHRL+  VEEILYPAMED +LD+++G+G
Sbjct: 80  LKITSGPILEKAGDLAAILTSLEENDILFIDEIHRLNNTVEEILYPAMEDGELDIIIGKG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSA+S++I L  FTLI ATTR GLL+ PL+DRFG+  ++ +Y I++++ I+ RGAK+ G+
Sbjct: 140 PSAKSIRIELPPFTLIGATTRAGLLSAPLRDRFGVSHKMEYYNIDEIRAIIIRGAKILGV 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +++E A EI+ RSRGTPRIA RLL+RVRD+ E+    TI    A  AL  L +D  G D
Sbjct: 200 KISEEGAIEISKRSRGTPRIANRLLKRVRDYCEIKGNGTIDVVSAKNALDMLGVDSSGLD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           +LD   +  I  N+ GGPVGIET+S  L E R  +E++ EPY+++ GF++RT RGR++ P
Sbjct: 260 ELDRNIINSIIENYDGGPVGIETLSLLLGEDRRTLEEVYEPYLVKIGFLKRTNRGRVVTP 319

Query: 322 IAWQHLGID 330
            A+QH   D
Sbjct: 320 KAYQHFKKD 328


>gi|212550683|ref|YP_002309000.1| Holliday junction DNA helicase RuvB [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212548921|dbj|BAG83589.1| Holliday junction DNA helicase RuvB [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 339

 Score =  342 bits (878), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 171/334 (51%), Positives = 232/334 (69%), Gaps = 1/334 (0%)

Query: 2   MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD   + S  +S+ + +  ++LRP   ++F GQ +   NLK+F++AA+ R +ALDHVL  
Sbjct: 1   MDNYNIRSNQLSENEKEFENVLRPLFFKDFGGQDKIIENLKIFVQAARLRGDALDHVLLH 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTL+ ++A EL V F+ TSGPV+ K GDLA +LT+L   DVLFIDEIHRLS +
Sbjct: 61  GPPGLGKTTLSSIIANELNVGFKVTSGPVLDKPGDLAGILTSLGKNDVLFIDEIHRLSPL 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EE LY AMED+++D+M+  G SARS++I +  FTL+ ATTR GLLT+PL+ RFGI + L
Sbjct: 121 IEEYLYSAMEDYRIDIMIDRGASARSIQIEIEPFTLVGATTRSGLLTSPLRTRFGINLHL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y++E L +IV+R A +  +   D AA EIA RSRGTPRI   LLRRVRDFA+V     
Sbjct: 181 EYYDVEALTSIVKRSATILNVLCDDSAAFEIASRSRGTPRICNALLRRVRDFAQVKGNGK 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I + IA  AL  L IDK G D++D + L  I   F GGPVG+ TIS  L E    IE++ 
Sbjct: 241 IEKSIACFALEALNIDKYGLDEIDNKILLTIMDKFNGGPVGLTTISIALGEDPGTIEEVY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           EP+++++GFI+RTPRGR + P+A+ H G  I  +
Sbjct: 301 EPFLVKEGFIKRTPRGREVTPLAYMHFGRPISEK 334


>gi|332685821|ref|YP_004455595.1| holliday junction DNA helicase RuvB [Melissococcus plutonius ATCC
           35311]
 gi|332369830|dbj|BAK20786.1| holliday junction DNA helicase RuvB [Melissococcus plutonius ATCC
           35311]
          Length = 337

 Score =  342 bits (878), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 169/329 (51%), Positives = 224/329 (68%), Gaps = 1/329 (0%)

Query: 1   MMDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M + E L++   +Q+D  +   LRP+ L ++ GQ +    L ++I+AA  R E LDH L 
Sbjct: 1   MSEEERLMTAKSNQQDEILEKSLRPKFLTQYIGQEKVKQELTIYIKAACNRKEVLDHTLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA V A E+ V  R+TSGP I + GDL A+L  L   DVLFIDEIHRL  
Sbjct: 61  YGPPGLGKTTLAMVTANEMDVGMRTTSGPAIERPGDLVAILNELTPGDVLFIDEIHRLPR 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEE+LY AMEDF +D+MVG+G +A  V  +L  FTLI ATTR G+L+ PL+DRFGI   
Sbjct: 121 TVEEMLYSAMEDFYVDIMVGQGTTAHPVHFSLPPFTLIGATTRAGMLSAPLRDRFGIISH 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           + +Y +EDLK IV R + +    + DE ACEIA RSRGTPRIA RLL+RVRDFA+V    
Sbjct: 181 MEYYTVEDLKEIVIRSSDIFQTEIMDEGACEIARRSRGTPRIANRLLKRVRDFAQVQSNG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            +T++IAD AL  L +D  G D +D + L  +   +GGGPVG+ TIS  + E  + +ED+
Sbjct: 241 VVTKDIADKALTLLQVDHQGLDYIDQKLLKTMIELYGGGPVGLSTISVNIGEETETVEDM 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
            EP++IQ+GFI+RTPRGR+   +A++HLG
Sbjct: 301 YEPFLIQKGFIKRTPRGRIATTLAYEHLG 329


>gi|313623658|gb|EFR93814.1| holliday junction DNA helicase RuvB [Listeria innocua FSL J1-023]
          Length = 335

 Score =  342 bits (878), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 178/329 (54%), Positives = 229/329 (69%), Gaps = 1/329 (0%)

Query: 2   MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD   + S  V  E+    + LRP+TL ++ GQ +  +NL VFIEAA  R EALDHVL  
Sbjct: 1   MDERIISSETVDAEEVSFETSLRPQTLSQYIGQDKVKNNLTVFIEAATLRNEALDHVLLY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA V+A E+G   ++TSGP I + GDLA +LT+LE  DVLFIDEI   S  
Sbjct: 61  GPPGLGKTTLAMVIASEMGSEIKTTSGPAIERPGDLATILTSLEPGDVLFIDEIXXXSRA 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EEILYPAMED+ LD+++G GP+ARSV+++L  FTLI ATTR GLL+ PL+DRFG+   L
Sbjct: 121 IEEILYPAMEDYCLDIVIGTGPTARSVRLDLPPFTLIGATTRAGLLSAPLRDRFGVIDHL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  E L  IV R + +    + D  A EIA RSRGTPRIA RLL+RVRDFA+V    T
Sbjct: 181 EFYTEEQLTEIVLRTSGILDTKIDDLGAREIARRSRGTPRIANRLLKRVRDFAQVRGNGT 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +T ++A  AL  L +D  G D +D + L  I ++F GGPVG++TI+A + E R+ IED+ 
Sbjct: 241 VTEKLAKEALTLLQVDPRGLDTIDQKLLHTIIQSFRGGPVGLDTIAASIGEERETIEDMQ 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           EPY++Q GF+QRTPRGR+    A+ HLGI
Sbjct: 301 EPYLLQIGFLQRTPRGRIATETAYNHLGI 329


>gi|307704114|ref|ZP_07641042.1| holliday junction DNA helicase RuvB [Streptococcus mitis SK597]
 gi|307622336|gb|EFO01345.1| holliday junction DNA helicase RuvB [Streptococcus mitis SK597]
          Length = 323

 Score =  342 bits (878), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 170/309 (55%), Positives = 219/309 (70%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E+ GQ +    L++FIEAAK R EALDHVL  GPPGLGKTT+A V+A ELGVN
Sbjct: 11  LRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANELGVN 70

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGPVI KAGDL A+L +LE  DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G
Sbjct: 71  LKQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAG 130

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
             +RSV + L  FTLI ATTR G+L+NPL+ RFGI   + +Y   DL  IV+R A +  +
Sbjct: 131 EGSRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYAHADLTEIVERTADIFEM 190

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T EAA E+A+RSRGTPRIA RLL+RVRDFA++     I   I D AL  L +D  G D
Sbjct: 191 EITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGNGVIDDLITDKALTMLDVDHEGLD 250

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GFI RT  GR+   
Sbjct: 251 YVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRSGRVATA 310

Query: 322 IAWQHLGID 330
            A++HLG +
Sbjct: 311 KAYEHLGYE 319


>gi|150003857|ref|YP_001298601.1| Holliday junction DNA helicase RuvB [Bacteroides vulgatus ATCC
           8482]
 gi|254880917|ref|ZP_05253627.1| holliday junction DNA helicase RuvB [Bacteroides sp. 4_3_47FAA]
 gi|294775013|ref|ZP_06740542.1| Holliday junction DNA helicase RuvB [Bacteroides vulgatus PC510]
 gi|319639926|ref|ZP_07994654.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacteroides sp.
           3_1_40A]
 gi|166231464|sp|A6KZW5|RUVB_BACV8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|149932281|gb|ABR38979.1| Holliday junction DNA helicase RuvB [Bacteroides vulgatus ATCC
           8482]
 gi|254833710|gb|EET14019.1| holliday junction DNA helicase RuvB [Bacteroides sp. 4_3_47FAA]
 gi|294451057|gb|EFG19528.1| Holliday junction DNA helicase RuvB [Bacteroides vulgatus PC510]
 gi|317388465|gb|EFV69316.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacteroides sp.
           3_1_40A]
          Length = 342

 Score =  342 bits (878), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 170/307 (55%), Positives = 226/307 (73%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP   E+F+GQ +   NL++F++AA+ RAEALDHVL  GPPGLGKTTL+ ++A ELGV 
Sbjct: 23  LRPLNFEDFSGQDKVVDNLRIFVKAARLRAEALDHVLLHGPPGLGKTTLSNIIANELGVG 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS +VEE LY AMED+++D+M+ +G
Sbjct: 83  FKVTSGPVLDKPGDLAGVLTSLEPNDVLFIDEIHRLSPVVEEYLYSAMEDYRIDIMIDKG 142

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSARS+++ LS FTL+ ATTR GLLT PL+ RFGI + L +Y+ + L +I++R A +  +
Sbjct: 143 PSARSIQLELSPFTLVGATTRSGLLTAPLRARFGINLHLEYYDDDVLTSIIRRSATILNV 202

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
               +AA EIA RSRGTPRIA  LLRRVRDFA+V  +  I  EIA  AL  L ID+ G D
Sbjct: 203 PCDVKAAGEIASRSRGTPRIANALLRRVRDFAQVKGSGRIDVEIARFALEALNIDRYGLD 262

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           ++D + L  I   F GGPVG+ TI+  L E    IE++ EP++I++GF++RTPRGR +  
Sbjct: 263 EIDNKILCTIIDKFKGGPVGLTTIATALGEDAGTIEEVYEPFLIKEGFLKRTPRGREVTE 322

Query: 322 IAWQHLG 328
           +A+ HLG
Sbjct: 323 LAYMHLG 329


>gi|227550816|ref|ZP_03980865.1| crossover junction endoribonuclease subunit B [Enterococcus faecium
           TX1330]
 gi|257887928|ref|ZP_05667581.1| holliday junction DNA helicase RuvB [Enterococcus faecium
           1,141,733]
 gi|257893271|ref|ZP_05672924.1| holliday junction DNA helicase RuvB [Enterococcus faecium
           1,231,408]
 gi|257896454|ref|ZP_05676107.1| holliday junction DNA helicase RuvB [Enterococcus faecium Com12]
 gi|293377529|ref|ZP_06623724.1| Holliday junction DNA helicase RuvB [Enterococcus faecium PC4.1]
 gi|227180053|gb|EEI61025.1| crossover junction endoribonuclease subunit B [Enterococcus faecium
           TX1330]
 gi|257823982|gb|EEV50914.1| holliday junction DNA helicase RuvB [Enterococcus faecium
           1,141,733]
 gi|257829650|gb|EEV56257.1| holliday junction DNA helicase RuvB [Enterococcus faecium
           1,231,408]
 gi|257833019|gb|EEV59440.1| holliday junction DNA helicase RuvB [Enterococcus faecium Com12]
 gi|292643844|gb|EFF61959.1| Holliday junction DNA helicase RuvB [Enterococcus faecium PC4.1]
          Length = 333

 Score =  342 bits (878), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 170/330 (51%), Positives = 226/330 (68%), Gaps = 1/330 (0%)

Query: 2   MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M  E LLS    + +  +   LRP+ L ++ GQ +    L+++IEAA+ R E LDHVL  
Sbjct: 1   MTDEYLLSPETGENELSLEKSLRPQLLSQYIGQRKVKQELQIYIEAARNREEPLDHVLLY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTT+A V+A E+ VN R+TSGP I + GDL A+L  LE  DVLFIDEIHRL  +
Sbjct: 61  GPPGLGKTTMAMVIANEMNVNIRTTSGPAIERPGDLVAILNELEAGDVLFIDEIHRLPRV 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LY AMEDF +D+MVG+GP+A  V   L  FTLI ATTR G+L+ PL+DRFGI   +
Sbjct: 121 VEEMLYSAMEDFYVDIMVGQGPTAHPVHFPLPPFTLIGATTRAGMLSAPLRDRFGIISHM 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y+ +DL+ IV R + +    + +E A EIA RSRGTPRIA RLL+RVRDFA+V     
Sbjct: 181 EYYDEQDLQEIVLRSSDIFQTEIIEEGALEIARRSRGTPRIANRLLKRVRDFAQVQGDGK 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I R IAD AL  L +D+ G D +D + L  +   +GGGPVG+ T+S  + E R+ +ED+ 
Sbjct: 241 IDRPIADQALTLLQVDQAGLDYVDQKLLRTMIELYGGGPVGLSTLSVNIGEERETVEDMY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           EPY+IQ+GF++RTPRGR+    A++H G D
Sbjct: 301 EPYLIQKGFLKRTPRGRMATAYAYEHFGYD 330


>gi|193213723|ref|YP_001994922.1| Holliday junction DNA helicase RuvB [Chloroherpeton thalassium ATCC
           35110]
 gi|193087200|gb|ACF12475.1| Holliday junction DNA helicase RuvB [Chloroherpeton thalassium ATCC
           35110]
          Length = 342

 Score =  342 bits (877), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 170/309 (55%), Positives = 223/309 (72%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP    +F GQ +   NLK+FI AA+ R +ALDHVL  GPPGLGKTTLA +VA E+GV 
Sbjct: 22  IRPARFGDFAGQKKIVENLKIFIAAARERDDALDHVLLSGPPGLGKTTLAYIVAHEMGVG 81

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            ++TSGPVI K G+LA LLT+LE  DVLFIDEIHRL+  VEE LY AMEDF+LD+M+  G
Sbjct: 82  IKATSGPVIDKPGNLAGLLTSLEKGDVLFIDEIHRLNPAVEEYLYSAMEDFKLDIMLDSG 141

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSARSV+I +  FTL+ ATTR GLLT PL+ RFGI +RL++Y  E L+ IVQR +++ G+
Sbjct: 142 PSARSVQIAIPPFTLVGATTRAGLLTAPLRARFGINLRLDYYSAELLEKIVQRASRIFGV 201

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  + A EIA RSRGTPRIA RLLRR RDFA+V     I++ IA   L  L ID+ G D
Sbjct: 202 EIEKDGAFEIARRSRGTPRIANRLLRRARDFAQVNGDLHISKNIAKRTLEALEIDEYGLD 261

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           ++D R ++ +   + GGPVG+ T++  + E  D IE++ EPY+IQ+G+I RTPRGR+   
Sbjct: 262 EMDKRLISALIEKYRGGPVGVATLAMAVGEEPDTIEEVYEPYLIQEGYIMRTPRGRVATD 321

Query: 322 IAWQHLGID 330
           +A++  GID
Sbjct: 322 LAYERFGID 330


>gi|299535651|ref|ZP_07048972.1| Holliday junction DNA helicase RuvB [Lysinibacillus fusiformis ZC1]
 gi|298728851|gb|EFI69405.1| Holliday junction DNA helicase RuvB [Lysinibacillus fusiformis ZC1]
          Length = 334

 Score =  342 bits (877), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 173/331 (52%), Positives = 230/331 (69%), Gaps = 1/331 (0%)

Query: 5   EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E +++      D    L LRP+ L ++ GQ +   NL++FIEAAK R E+LDHVL  GPP
Sbjct: 3   ERMMASEAGSYDEQFELSLRPQKLAQYIGQHKVKENLQIFIEAAKLRQESLDHVLLYGPP 62

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA V+A E+ VN R TSGP I + GDLAA+L++LE  DVLFIDEIHRL   +EE
Sbjct: 63  GLGKTTLAAVIANEMNVNVRMTSGPAIERPGDLAAILSSLEPGDVLFIDEIHRLPRAIEE 122

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LYPAMEDF LD++VG+GP ARSV+++L  FTL+ ATTR G L+ PL+DRFG+ +RL +Y
Sbjct: 123 VLYPAMEDFCLDIVVGKGPEARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLLRLEYY 182

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           +   L  IV R A L  + +   AA E+A RSRGTPRIA RLL+RVRD+A+V     IT 
Sbjct: 183 DDRSLAEIVVRSAHLFEVEIEQVAAMEMARRSRGTPRIANRLLKRVRDYAQVLGDGMITE 242

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
            +A  AL  L +D  G D +D + +T +   F GGPVG++T++A + E R  IED+ EPY
Sbjct: 243 GLAQQALELLQVDPRGLDHIDHKLVTNMIERFRGGPVGLDTLAASIGEERVTIEDVYEPY 302

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           ++Q G IQRTPRGR+   +A++H G + P +
Sbjct: 303 LMQIGLIQRTPRGRVATHLAYEHFGYEYPQQ 333


>gi|224476738|ref|YP_002634344.1| Holliday junction DNA helicase RuvB [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|254767440|sp|B9DNE4|RUVB_STACT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|222421345|emb|CAL28159.1| holliday junction DNA helicase [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 338

 Score =  342 bits (877), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 166/328 (50%), Positives = 233/328 (71%), Gaps = 3/328 (0%)

Query: 1   MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M DR  ++ ++  ++++   L LRP  L+++ GQ    SNL+VFI+AAK R E LDHVL 
Sbjct: 1   MDDR--MVDQSQHEDESSFELSLRPHFLKQYIGQASIKSNLEVFIKAAKLREEPLDHVLL 58

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTL+ ++A E+ VN R+ +GP I + GDLAA+L+ L+  DVLFIDEIHRLS 
Sbjct: 59  FGPPGLGKTTLSNIIANEMNVNIRTVTGPAIERPGDLAAILSGLQPGDVLFIDEIHRLSS 118

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMEDF LD+++G+G  ARS++I+L  FTL+ ATTR G LT PL+DRFG+ +R
Sbjct: 119 VVEEVLYPAMEDFYLDIVIGKGEEARSIRIDLPPFTLVGATTRAGSLTGPLRDRFGVHLR 178

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y+  +LK I+ R A++    + +E+A E+A RSRGTPRIA RLL+RVRDF +V    
Sbjct: 179 LEYYKESELKDIIIRTAEVLNTEIDEESAVELAKRSRGTPRIANRLLKRVRDFQQVNEDD 238

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  E    AL  L +D  G D +D + ++ I   + GGPVG++TI+  + E R  IED+
Sbjct: 239 MIYIETTKRALQLLQVDDYGLDYIDHKMMSCIINQYNGGPVGLDTIAVSIGEERITIEDV 298

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHL 327
            EP++IQ+GF++RTPRGR   P+A++H 
Sbjct: 299 YEPFLIQKGFLERTPRGRKATPLAYEHF 326


>gi|322375001|ref|ZP_08049515.1| holliday junction DNA helicase RuvB [Streptococcus sp. C300]
 gi|321280501|gb|EFX57540.1| holliday junction DNA helicase RuvB [Streptococcus sp. C300]
          Length = 332

 Score =  342 bits (877), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 169/313 (53%), Positives = 221/313 (70%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E+ GQ +    L++FIEAAK R EALDHVL  GPPGLGKTT+A V+A ELGVN
Sbjct: 20  LRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANELGVN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGPVI KAGDL A+L +LE  DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G
Sbjct: 80  LKQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
             +RSV ++L  FTLI ATTR G+L+NPL+ RFGI   + +Y   DL  IV+R A +  +
Sbjct: 140 EGSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYAHADLTEIVERTADIFEM 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T EAA E+A+RSRGTPRIA RLL+RVRDFA++     I   I + AL  L +D  G D
Sbjct: 200 EITHEAATELALRSRGTPRIANRLLKRVRDFAQIMGNGVIDDVITNKALTMLDVDHEGLD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GFI RT  GR+   
Sbjct: 260 YVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRSGRVATA 319

Query: 322 IAWQHLGIDIPHR 334
            A++HLG +   +
Sbjct: 320 KAYEHLGYEYSEK 332


>gi|256847965|ref|ZP_05553409.1| Holliday junction DNA helicase RuvB [Lactobacillus coleohominis
           101-4-CHN]
 gi|256715025|gb|EEU30002.1| Holliday junction DNA helicase RuvB [Lactobacillus coleohominis
           101-4-CHN]
          Length = 337

 Score =  342 bits (877), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 169/330 (51%), Positives = 230/330 (69%), Gaps = 2/330 (0%)

Query: 3   DREGLLSRNVSQEDADI--SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           D E ++S   + E+  +    LRP+TL+++ GQ +    LKV+I AAK+R+EALDHVL  
Sbjct: 4   DAENIMSNQATNENESVIEKSLRPQTLDDYIGQRKIKKELKVYITAAKSRSEALDHVLLY 63

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA VVA E+GV  ++TSGP I K GDL ALL  L+  D+LFIDEIHRL  +
Sbjct: 64  GPPGLGKTTLAMVVAHEMGVQIKTTSGPAIEKPGDLVALLNELQAGDILFIDEIHRLPKV 123

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LY AMEDF +D++VGEGP+A  V   L  FTLI ATTR G L+ PL+DRFGI   +
Sbjct: 124 VEEMLYSAMEDFYIDIVVGEGPTAHPVHFPLPPFTLIGATTRAGALSAPLRDRFGIVEHM 183

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y+  +L+ I+ R A +  +++    A E+A+RSRGTPRIA RLL+RVRDFA+VA    
Sbjct: 184 AYYDSAELQQIILRSAGIFKISIEQTGAHELALRSRGTPRIANRLLKRVRDFAQVAKKPA 243

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I  EI   AL  L +D  G D++D + L  +   + GGPVG++TI+A + E  D IE++ 
Sbjct: 244 IDHEIVVKALHLLQVDGKGLDEVDRKVLLTMINLYHGGPVGVKTIAANIGEEVDTIEEMY 303

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           EPY++Q GF+ RT RGR++ P A++HLG++
Sbjct: 304 EPYLLQIGFLSRTSRGRVVTPAAYEHLGLN 333


>gi|228478116|ref|ZP_04062727.1| holliday junction DNA helicase RuvB [Streptococcus salivarius
           SK126]
 gi|228250296|gb|EEK09549.1| holliday junction DNA helicase RuvB [Streptococcus salivarius
           SK126]
          Length = 334

 Score =  342 bits (877), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 163/309 (52%), Positives = 223/309 (72%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+  +E+ GQ +    LK+FIEAAK R EALDH L  GPPGLGKTT+A V+A E+GVN
Sbjct: 20  LRPQYFKEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANEMGVN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGP I KAGDL A+L +LE  D+LFIDEIHR+ + VEE+LY AMED+ +D+M+G G
Sbjct: 80  LKQTSGPAIEKAGDLVAILNDLEPGDILFIDEIHRMPMAVEEVLYSAMEDYYIDIMIGAG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            ++RSV + L  FTL+ ATTR G+L+NPL+ RFGI   + +YE+ DLK I++R +++  +
Sbjct: 140 ETSRSVHLELPPFTLVGATTRAGMLSNPLRARFGINGHMEYYELPDLKEIIERTSEIFEM 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T EAA E+A RSRGTPRIA RLL+RVRD+A++     I  +IAD AL  L +D  G D
Sbjct: 200 TITPEAALELARRSRGTPRIANRLLKRVRDYAQIMGDGIIDDKIADKALTMLDVDHEGLD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GFI RT  GR+   
Sbjct: 260 YVDQKILRTMIEVYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRTGRVATA 319

Query: 322 IAWQHLGID 330
            A++H+G D
Sbjct: 320 KAYEHMGYD 328


>gi|298244052|ref|ZP_06967859.1| Holliday junction DNA helicase RuvB [Ktedonobacter racemifer DSM
           44963]
 gi|297557106|gb|EFH90970.1| Holliday junction DNA helicase RuvB [Ktedonobacter racemifer DSM
           44963]
          Length = 344

 Score =  342 bits (877), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 174/333 (52%), Positives = 237/333 (71%), Gaps = 3/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M DR  L+S N+S E+  +   LRPR L E+ GQ +   NL + +EAA+ R E +DHVL 
Sbjct: 1   MSDR--LVSPNISDEEQILEGSLRPRRLAEYIGQEKIKENLGILLEAARRRNEPVDHVLL 58

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTL  ++A E+GVN ++T+GP I  AGDLA++LT+L+  +VLFIDE+HRL+ 
Sbjct: 59  YGPPGLGKTTLCNIIAAEMGVNLKTTAGPAIEHAGDLASILTSLQPGEVLFIDEVHRLAR 118

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEE LY AMEDF LD+++G+GPSARS++++L  FT++ ATTRVG LT PL+DRFG   R
Sbjct: 119 AVEERLYSAMEDFALDVVIGKGPSARSLRLSLPPFTVVGATTRVGSLTAPLRDRFGAIYR 178

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           + +Y+I  L+ IV R A +  +   +    EIA R+RGTPRI  RLL+RVRD+A+V    
Sbjct: 179 MEYYDITSLEMIVHRSAGILKVPADEGGIKEIAGRARGTPRIVNRLLKRVRDYAQVRADG 238

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            ITRE+A+ AL  L +D++G DQ D   LT I + F GGPVG++T++A  SE  + IED+
Sbjct: 239 VITREVANRALDALEVDEIGLDQTDRNMLTTIIQKFNGGPVGLDTLAASTSEDSETIEDV 298

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
            EPY++Q GFI RTPRGR+ M  A++HLG+  P
Sbjct: 299 YEPYLLQLGFIARTPRGRVAMRAAYEHLGLTPP 331


>gi|302874956|ref|YP_003843589.1| Holliday junction DNA helicase RuvB [Clostridium cellulovorans
           743B]
 gi|307690426|ref|ZP_07632872.1| Holliday junction DNA helicase RuvB [Clostridium cellulovorans
           743B]
 gi|302577813|gb|ADL51825.1| Holliday junction DNA helicase RuvB [Clostridium cellulovorans
           743B]
          Length = 342

 Score =  342 bits (877), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 169/313 (53%), Positives = 222/313 (70%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L+E+ GQ +    L +FIEAA+ R E LDHVL  GPPGLGKTTLA ++A E+G  
Sbjct: 21  LRPQNLKEYIGQYKVKEKLSIFIEAAQRRHEPLDHVLLYGPPGLGKTTLATIIANEMGGT 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGP I +AGDLAA+LT L+D DVLFIDEIHR++  VEEILYPAMED+ LD+++G+G
Sbjct: 81  LKITSGPAIERAGDLAAILTGLKDNDVLFIDEIHRMNRAVEEILYPAMEDYALDIVIGKG 140

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            SA+S++I+L +FTLI ATTR+GLLT PL+DRFG+   + +Y+  DLK I+ R + +  L
Sbjct: 141 ASAKSIRIDLPKFTLIGATTRIGLLTAPLRDRFGVMCPMEYYDESDLKEIISRSSSILDL 200

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + +EAA E+A RSRGTPRIA RLL+RVRD+ +V             AL  L ID  GFD
Sbjct: 201 PIDEEAAMELAKRSRGTPRIANRLLKRVRDYCDVKSNGIANLSSTREALKLLDIDTEGFD 260

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L+ I  NF GGPVGIET+S  + E    +ED+ EPY++Q+GFI RTPRGR    
Sbjct: 261 TIDNKILSAIIINFKGGPVGIETLSYFIGEELGTLEDVYEPYLLQKGFILRTPRGRTATE 320

Query: 322 IAWQHLGIDIPHR 334
            A++HL I I  +
Sbjct: 321 KAYRHLNIPINEK 333


>gi|315637758|ref|ZP_07892960.1| crossover junction ATP-dependent DNA helicase RuvB [Arcobacter
           butzleri JV22]
 gi|315477979|gb|EFU68710.1| crossover junction ATP-dependent DNA helicase RuvB [Arcobacter
           butzleri JV22]
          Length = 345

 Score =  342 bits (877), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 166/319 (52%), Positives = 231/319 (72%), Gaps = 1/319 (0%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           +ED +   LRP   +++ GQ +   NL+VFI+A+K R EALDH+LF GPPGLGKTTL+ +
Sbjct: 13  EEDNNEISLRPSNWDDYIGQEKIKKNLRVFIDASKKRKEALDHILFYGPPGLGKTTLSYL 72

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           ++ E+  N + T+GP+I K+GDLAA+LTNLE+ D+LFIDEIHRLS  VEEILYPAMED++
Sbjct: 73  ISNEMNTNIKVTAGPMIEKSGDLAAILTNLEEGDILFIDEIHRLSPAVEEILYPAMEDYR 132

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           LD+++G GP+A++VKI+L RFTLI ATTR G+L+NPL++RFG+  R+ FY  E+L  I+Q
Sbjct: 133 LDIIIGSGPAAQTVKIDLPRFTLIGATTRAGMLSNPLRERFGMHFRMQFYTHEELAKIIQ 192

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           + A   G    D+AA EI+ RSRGTPR+A RLLRRVRDF+EV + K I  +    AL  L
Sbjct: 193 KAAIKLGKNCEDDAALEISKRSRGTPRVALRLLRRVRDFSEVENEKYIHIKRCKYALDEL 252

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +++ GFD++D+  L ++  N  G P+G+ TI+A LSE    IED IEPY++  G+I+RT
Sbjct: 253 GVNESGFDEMDINLLELLISN-RGKPMGLSTIAAALSEDEGTIEDAIEPYLLANGYIERT 311

Query: 314 PRGRLLMPIAWQHLGIDIP 332
            RGR+     ++   +  P
Sbjct: 312 ARGRVASVKTYEMFRLSYP 330


>gi|224436522|ref|ZP_03657531.1| Holliday junction DNA helicase RuvB [Helicobacter cinaedi CCUG
           18818]
          Length = 350

 Score =  342 bits (877), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 168/309 (54%), Positives = 229/309 (74%), Gaps = 2/309 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP   EE+ GQ +   NLKVFIEA+K R E LDH+LF GPPGLGKTTL+ ++A E+  N
Sbjct: 34  LRPSVWEEYVGQEKIKKNLKVFIEASKRRNECLDHILFFGPPGLGKTTLSHIIAYEMDCN 93

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + ++ P+I K+GDLAA+LTNL + D+LFIDEIHRLS  +EEILYPAMEDF+LD+++G G
Sbjct: 94  IKVSAAPMIEKSGDLAAILTNLNEGDILFIDEIHRLSPAIEEILYPAMEDFRLDIIIGSG 153

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+A+++KI+L+ FTLI ATTR G+L+NPL+DRFG+  RL FYE ++L  IVQ  AK    
Sbjct: 154 PAAQTLKIDLAPFTLIGATTRAGMLSNPLRDRFGMSFRLQFYEPKELALIVQTAAKKLSK 213

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT-ITREIADAALLRLAIDKMGF 260
           +++ E A EIA RSRGTPRIA RLLRRVRDFA+V  +++ I  E    AL  L ++++GF
Sbjct: 214 SLSQEGANEIARRSRGTPRIALRLLRRVRDFADVRDSQSEIDIECVHYALNELGVNELGF 273

Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320
           D+LDL YL ++A + G   +G+ TI+A +SE    IED+IEPY++  G+ +RT +GR+  
Sbjct: 274 DELDLHYLAILAESRGRA-IGLNTIAAAMSEDEATIEDVIEPYLLANGYFERTAKGRIAT 332

Query: 321 PIAWQHLGI 329
           P  ++ L I
Sbjct: 333 PKTYELLKI 341


>gi|260893477|ref|YP_003239574.1| Holliday junction DNA helicase RuvB [Ammonifex degensii KC4]
 gi|260865618|gb|ACX52724.1| Holliday junction DNA helicase RuvB [Ammonifex degensii KC4]
          Length = 347

 Score =  342 bits (877), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 175/327 (53%), Positives = 230/327 (70%), Gaps = 1/327 (0%)

Query: 7   LLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           L++    +E+    L LRPR LEEF GQ +    L++  EAA+ R E LDHVL  GPPGL
Sbjct: 7   LVAAEAGEEERQFELSLRPRRLEEFVGQEKVKEALRIACEAARRRREPLDHVLLSGPPGL 66

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLA+++A E+GVN R TSGP I + GDLAA+LT+L   DVLFIDEIHRL   VEEIL
Sbjct: 67  GKTTLARIIAAEMGVNVRVTSGPAIERPGDLAAILTSLSPGDVLFIDEIHRLHRAVEEIL 126

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           YPAMED  LDL++G+GP AR+V+++L  FTL+ ATTR+GLL++PL+DRFG+   L +Y  
Sbjct: 127 YPAMEDRALDLVIGKGPGARAVRLSLPPFTLVGATTRMGLLSSPLRDRFGLAFHLEYYSP 186

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
            +L+ I++R A + G+ +  E A  IA R+RGTPR+A RLLRRVRD+ EV     IT E 
Sbjct: 187 AELERILERTADILGIKLLPEGAAVIARRARGTPRVAIRLLRRVRDYVEVKAEGIITEEA 246

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           A  AL  LA+D++G D +D RYL  +   FGGGP G+E ++A   E    +E+++EPY++
Sbjct: 247 AVEALDFLAVDELGLDPVDRRYLRCLIERFGGGPAGVEALAASTGEEVSTLEEVVEPYLL 306

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           Q G I RTPRGRL  P A++HLGI  P
Sbjct: 307 QVGLIVRTPRGRLATPEAYRHLGIKPP 333


>gi|303249146|ref|ZP_07335386.1| Holliday junction DNA helicase RuvB [Desulfovibrio fructosovorans
           JJ]
 gi|302489471|gb|EFL49418.1| Holliday junction DNA helicase RuvB [Desulfovibrio fructosovorans
           JJ]
          Length = 341

 Score =  342 bits (877), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 171/306 (55%), Positives = 222/306 (72%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  L EF GQ +  +NL+VF+ AA  +  ALDH L  GPPGLGKTTLAQ++A ELGVN
Sbjct: 30  IRPSKLAEFIGQDDLRANLRVFLHAAMEQGRALDHSLLYGPPGLGKTTLAQIMASELGVN 89

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
             +T+GPV+ + GDLAA++TNL   D+LFIDEIHR+   VEEILYPAMEDF+LDL++G+G
Sbjct: 90  LVTTTGPVLERCGDLAAIVTNLRRGDILFIDEIHRMPPAVEEILYPAMEDFKLDLIIGQG 149

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P AR+V+I+L  FTL+ ATTR+GLLT+PL+DRFG+  RL FY  E+L  IV R A + G+
Sbjct: 150 PGARTVRIDLEPFTLVGATTRLGLLTSPLRDRFGVIFRLEFYSPEELARIVTRSAGILGI 209

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            VT   A  +  RSRGTPRIA RLLRR+RDFA VA A T+   +A  AL RL +D  G D
Sbjct: 210 GVTPGGALVVGQRSRGTPRIANRLLRRLRDFAVVAGASTLDETLAGEALARLDVDPHGLD 269

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           Q+D + L  I R++ GGPVG++T++  LSE    IE++ EPY+IQ G I+RT RGR+   
Sbjct: 270 QMDRKILETIIRHYEGGPVGVKTLAVALSEEVRTIEEIYEPYLIQCGLIKRTARGRVATA 329

Query: 322 IAWQHL 327
            A+ H+
Sbjct: 330 KAYAHV 335


>gi|153003865|ref|YP_001378190.1| Holliday junction DNA helicase RuvB [Anaeromyxobacter sp. Fw109-5]
 gi|171769468|sp|A7H910|RUVB_ANADF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|152027438|gb|ABS25206.1| Holliday junction DNA helicase RuvB [Anaeromyxobacter sp. Fw109-5]
          Length = 342

 Score =  342 bits (877), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 168/312 (53%), Positives = 222/312 (71%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP T EE+ GQ +   N +V+ +AA+AR EALDHVL  GPPGLGKT+LA ++ARELGV 
Sbjct: 24  LRPATFEEYVGQEKLVENFRVYAKAARARGEALDHVLLSGPPGLGKTSLAHILARELGVA 83

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
              TSGP + K GDLA LLT L  RD+LFIDEIHRLS  VEE LYPAMED++ D+++G G
Sbjct: 84  LHVTSGPALVKKGDLAGLLTALAPRDILFIDEIHRLSPAVEEALYPAMEDYRFDVVLGAG 143

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
             A+++++ L RFTL+ ATTR GLL +PL+DRF I  RL +YE  +L+ I  R A+   L
Sbjct: 144 LGAQTMEMKLERFTLVGATTRTGLLASPLRDRFPIQERLGYYEPTELREIAVRAARKLAL 203

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            V    A E+A R+RGTPRIA RLL+R RDFA+V    T+TREI +  L RL +D  G D
Sbjct: 204 PVDPAGAEELARRARGTPRIAIRLLQRARDFAQVEGDGTLTREIVETTLERLEVDGRGLD 263

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D R L ++   FGGGPVGI+ ++A + E RD +ED+ EP+++++GF+ RTPRGR+ +P
Sbjct: 264 AMDRRILAVVLDTFGGGPVGIDAVAAAVGEERDTLEDVYEPFLVREGFLARTPRGRVALP 323

Query: 322 IAWQHLGIDIPH 333
            A+ HLG + P 
Sbjct: 324 PAYAHLGRERPQ 335


>gi|229496853|ref|ZP_04390562.1| holliday junction DNA helicase RuvB [Porphyromonas endodontalis
           ATCC 35406]
 gi|229316264|gb|EEN82188.1| holliday junction DNA helicase RuvB [Porphyromonas endodontalis
           ATCC 35406]
          Length = 344

 Score =  342 bits (877), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 173/307 (56%), Positives = 221/307 (71%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP +   F GQ     NL VF++AA  R ++LDHVL  GPPGLGKTTL+ ++A ELGV 
Sbjct: 24  LRPISFRSFRGQDTVVENLSVFVQAAAMRGDSLDHVLLHGPPGLGKTTLSNIIAAELGVG 83

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGPV+ K GDLA LLT+LE R VLFIDEIHRLS IVEE LY AMED+++D+M+ +G
Sbjct: 84  IKITSGPVLDKPGDLAGLLTSLEPRGVLFIDEIHRLSPIVEEYLYSAMEDYRIDIMIDKG 143

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P ARS++I+L+ FTL+ ATTR GLLT PL+ RFGI + L +Y+ + +  IV R A + G+
Sbjct: 144 PGARSIQIDLNPFTLVGATTRSGLLTAPLRARFGINLHLEYYDTKTIAGIVLRSAGILGV 203

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
           A ++EAA EIA RSRGTPRIA  LLRRVRDFA+V    TI  EIA  +L  L ID  G D
Sbjct: 204 ACSEEAAAEIARRSRGTPRIANALLRRVRDFAQVRGNGTIDSEIAVFSLEALNIDSCGLD 263

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + LT I   FGGGPVG+ TI+  +SE    IE++ EP++I++GFI+RTPRGR    
Sbjct: 264 NIDHKLLTTIIDKFGGGPVGVSTIATAMSEDVGTIEEVYEPFLIKEGFIKRTPRGREATA 323

Query: 322 IAWQHLG 328
            A++HLG
Sbjct: 324 HAYEHLG 330


>gi|212692652|ref|ZP_03300780.1| hypothetical protein BACDOR_02149 [Bacteroides dorei DSM 17855]
 gi|237709370|ref|ZP_04539851.1| holliday junction DNA helicase RuvB [Bacteroides sp. 9_1_42FAA]
 gi|237725064|ref|ZP_04555545.1| holliday junction DNA helicase RuvB [Bacteroides sp. D4]
 gi|265754553|ref|ZP_06089605.1| Holliday junction DNA helicase RuvB [Bacteroides sp. 3_1_33FAA]
 gi|212664730|gb|EEB25302.1| hypothetical protein BACDOR_02149 [Bacteroides dorei DSM 17855]
 gi|229436802|gb|EEO46879.1| holliday junction DNA helicase RuvB [Bacteroides dorei 5_1_36/D4]
 gi|229456426|gb|EEO62147.1| holliday junction DNA helicase RuvB [Bacteroides sp. 9_1_42FAA]
 gi|263234667|gb|EEZ20235.1| Holliday junction DNA helicase RuvB [Bacteroides sp. 3_1_33FAA]
          Length = 342

 Score =  342 bits (877), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 170/307 (55%), Positives = 226/307 (73%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP   E+F+GQ +   NL++F++AA+ RAEALDHVL  GPPGLGKTTL+ ++A ELGV 
Sbjct: 23  LRPLNFEDFSGQDKVVDNLRIFVKAARLRAEALDHVLLHGPPGLGKTTLSNIIANELGVG 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS +VEE LY AMED+++D+M+ +G
Sbjct: 83  FKVTSGPVLDKPGDLAGVLTSLEPNDVLFIDEIHRLSPVVEEYLYSAMEDYRIDIMIDKG 142

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSARS+++ LS FTL+ ATTR GLLT PL+ RFGI + L +Y+ + L +I++R A +  +
Sbjct: 143 PSARSIQLELSPFTLVGATTRSGLLTAPLRARFGINLHLEYYDDDVLTSIIRRSANILNV 202

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
               +AA EIA RSRGTPRIA  LLRRVRDFA+V  +  I  EIA  AL  L ID+ G D
Sbjct: 203 PCDMKAAGEIASRSRGTPRIANALLRRVRDFAQVKGSGRIDVEIARFALEALNIDRYGLD 262

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           ++D + L  I   F GGPVG+ TI+  L E    IE++ EP++I++GF++RTPRGR +  
Sbjct: 263 EIDNKILCTIIDKFKGGPVGLTTIATALGEDAGTIEEVYEPFLIKEGFLKRTPRGREVTE 322

Query: 322 IAWQHLG 328
           +A+ HLG
Sbjct: 323 LAYIHLG 329


>gi|313143025|ref|ZP_07805218.1| holliday junction ATP-dependent DNA helicase ruvB [Helicobacter
           cinaedi CCUG 18818]
 gi|313128056|gb|EFR45673.1| holliday junction ATP-dependent DNA helicase ruvB [Helicobacter
           cinaedi CCUG 18818]
          Length = 332

 Score =  342 bits (876), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 168/309 (54%), Positives = 229/309 (74%), Gaps = 2/309 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP   EE+ GQ +   NLKVFIEA+K R E LDH+LF GPPGLGKTTL+ ++A E+  N
Sbjct: 16  LRPSVWEEYVGQEKIKKNLKVFIEASKRRNECLDHILFFGPPGLGKTTLSHIIAYEMDCN 75

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + ++ P+I K+GDLAA+LTNL + D+LFIDEIHRLS  +EEILYPAMEDF+LD+++G G
Sbjct: 76  IKVSAAPMIEKSGDLAAILTNLNEGDILFIDEIHRLSPAIEEILYPAMEDFRLDIIIGSG 135

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+A+++KI+L+ FTLI ATTR G+L+NPL+DRFG+  RL FYE ++L  IVQ  AK    
Sbjct: 136 PAAQTLKIDLAPFTLIGATTRAGMLSNPLRDRFGMSFRLQFYEPKELALIVQTAAKKLSK 195

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT-ITREIADAALLRLAIDKMGF 260
           +++ E A EIA RSRGTPRIA RLLRRVRDFA+V  +++ I  E    AL  L ++++GF
Sbjct: 196 SLSQEGANEIARRSRGTPRIALRLLRRVRDFADVRDSQSEIDIECVHYALNELGVNELGF 255

Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320
           D+LDL YL ++A + G   +G+ TI+A +SE    IED+IEPY++  G+ +RT +GR+  
Sbjct: 256 DELDLHYLAILAESRGRA-IGLNTIAAAMSEDEATIEDVIEPYLLANGYFERTAKGRIAT 314

Query: 321 PIAWQHLGI 329
           P  ++ L I
Sbjct: 315 PKTYELLKI 323


>gi|307721656|ref|YP_003892796.1| Holliday junction DNA helicase RuvB [Sulfurimonas autotrophica DSM
           16294]
 gi|306979749|gb|ADN09784.1| Holliday junction DNA helicase RuvB [Sulfurimonas autotrophica DSM
           16294]
          Length = 337

 Score =  342 bits (876), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 168/319 (52%), Positives = 233/319 (73%), Gaps = 2/319 (0%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           ++ +E+++++L RP    E+ GQ +   NL VFIEA+K R EALDHVLF GPPGLGKTTL
Sbjct: 11  SLEEENSEVTL-RPDAWSEYIGQEQIKKNLSVFIEASKKREEALDHVLFYGPPGLGKTTL 69

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           A ++A E+  N + T+ P+I K+GDLAA+LTNLE+ D+LFIDEIHRLS  VEEILY +ME
Sbjct: 70  ALIIANEMNANIKVTAAPMIEKSGDLAAILTNLEEGDILFIDEIHRLSPAVEEILYSSME 129

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           D+++D+++G GP+A++VKI+L RFTLI ATTR G+L+NPL+DRFG+  R+NFY  ++L  
Sbjct: 130 DYRIDIIIGSGPAAQTVKIDLPRFTLIGATTRAGMLSNPLRDRFGMSFRMNFYTHDELAK 189

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           I+ + +      +  EAA EIA RSRGTPRIA RLLRRVRDFAEVA+ + I  +    AL
Sbjct: 190 IILQASNKLEREIIHEAAVEIAKRSRGTPRIALRLLRRVRDFAEVANEEHINHKRTQYAL 249

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
             L I+  GFD++DLR LT++A +  G  +G+ TI+A LSE    +ED++EPY+I  G++
Sbjct: 250 DELGINSHGFDEMDLRLLTLLASS-KGRAMGLSTIAAALSEDEGTVEDVLEPYLIANGYL 308

Query: 311 QRTPRGRLLMPIAWQHLGI 329
           +RT +GR   P  +  L +
Sbjct: 309 ERTAKGRRATPATYDVLNM 327


>gi|322374043|ref|ZP_08048577.1| holliday junction DNA helicase RuvB [Streptococcus sp. C150]
 gi|321277009|gb|EFX54080.1| holliday junction DNA helicase RuvB [Streptococcus sp. C150]
          Length = 334

 Score =  342 bits (876), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 163/309 (52%), Positives = 223/309 (72%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+  +E+ GQ +    LK+FIEAAK R EALDH L  GPPGLGKTT+A V+A E+GVN
Sbjct: 20  LRPQYFKEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANEMGVN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGP I KAGDL A+L +LE  D+LFIDEIHR+ + VEE+LY AMED+ +D+M+G G
Sbjct: 80  LKQTSGPAIEKAGDLVAILNDLEPGDILFIDEIHRMPMAVEEVLYSAMEDYYIDIMIGAG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            ++RSV + L  FTL+ ATTR G+L+NPL+ RFGI   + +YE+ DL  IV+R +++  +
Sbjct: 140 ETSRSVHLELPPFTLVGATTRAGMLSNPLRARFGINGHMEYYELPDLTEIVERTSEIFEM 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T EAA E+A RSRGTPRIA RLL+RVRD+A++     I  +IAD AL  L +D+ G D
Sbjct: 200 TITPEAALELARRSRGTPRIANRLLKRVRDYAQIMGNGIIDDKIADKALTMLDVDREGLD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GFI RT  GR+   
Sbjct: 260 YVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRTGRVATA 319

Query: 322 IAWQHLGID 330
            A++H+G D
Sbjct: 320 KAYEHMGYD 328


>gi|126654018|ref|ZP_01725851.1| Holliday junction DNA helicase B [Bacillus sp. B14905]
 gi|126589492|gb|EAZ83636.1| Holliday junction DNA helicase B [Bacillus sp. B14905]
          Length = 334

 Score =  342 bits (876), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 174/331 (52%), Positives = 231/331 (69%), Gaps = 1/331 (0%)

Query: 5   EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E +++   S  D    L LRP+ L ++ GQ +   NL++FIEAAK R E+LDHVL  GPP
Sbjct: 3   ERMMASEASGYDEQFELSLRPQRLAQYIGQHKVKENLQIFIEAAKLRQESLDHVLLYGPP 62

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA V+A E+ VN R TSGP I + GDLAA+L++LE  DVLFIDEIHRL   +EE
Sbjct: 63  GLGKTTLAAVIANEMSVNVRMTSGPAIERPGDLAAILSSLEPGDVLFIDEIHRLPRAIEE 122

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LYPAMEDF LD++VG+GP ARSV+++L  FTL+ ATTR G L+ PL+DRFG+ +RL +Y
Sbjct: 123 VLYPAMEDFCLDIVVGKGPEARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLLRLEYY 182

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           +   L  IV R A L  + +   AA E+A RSRGTPRIA RLL+RVRD+A+V     IT 
Sbjct: 183 DDISLAEIVARSAHLFEVEIEQIAAMEMARRSRGTPRIANRLLKRVRDYAQVLGDGMITE 242

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
            +A  AL  L +D  G D +D + +T +   F GGPVG++T++A + E R  IED+ EPY
Sbjct: 243 GLAKQALELLQVDPRGLDHIDHKLVTNMIERFRGGPVGLDTLAASIGEERVTIEDVYEPY 302

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           ++Q G IQRTPRGR+   +A++H G + P +
Sbjct: 303 LMQIGLIQRTPRGRVATHLAYEHFGYEYPQQ 333


>gi|291515131|emb|CBK64341.1| Holliday junction DNA helicase subunit RuvB [Alistipes shahii WAL
           8301]
          Length = 335

 Score =  342 bits (876), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 171/311 (54%), Positives = 222/311 (71%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ LE F+GQ +   NL +FI+AA  R ++LDHVL  GPPGLGKTTLA ++A E+G  
Sbjct: 17  IRPQELETFSGQDKIVENLHIFIKAALMRGDSLDHVLLHGPPGLGKTTLANIIANEMGAQ 76

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGPV+ K GDLA LLTNL   DVLFIDEIHRLS IVEE LY AMED+++D+++ +G
Sbjct: 77  LRVTSGPVLDKPGDLAGLLTNLNPGDVLFIDEIHRLSPIVEEYLYSAMEDYKIDIVLDKG 136

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSARS++I L+ FTLI ATTR GLLT+PL+ RFGI   L +Y+   L  IV+R A++  +
Sbjct: 137 PSARSIQIELAPFTLIGATTRSGLLTSPLRARFGIQCHLEYYDAPVLAGIVRRSARILDV 196

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
           ++ D+AA E+A+RSRGTPRIA  LLRRVRDFA V     I  EI   AL  L ID  G D
Sbjct: 197 SIDDDAAHEVALRSRGTPRIANALLRRVRDFAMVKGEGHIDLEITRIALAALNIDSRGLD 256

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           Q+D + L  I   F GGPVG+ T++  + E    IE++ EP++I++GF++RTPRGR   P
Sbjct: 257 QMDNKILGTIIEKFNGGPVGLNTVATAVGEEAGTIEEVYEPFLIKEGFLKRTPRGREATP 316

Query: 322 IAWQHLGIDIP 332
           +A+QHLG   P
Sbjct: 317 LAYQHLGFTHP 327


>gi|73662427|ref|YP_301208.1| Holliday junction DNA helicase RuvB [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
 gi|97190353|sp|Q49Y79|RUVB_STAS1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|72494942|dbj|BAE18263.1| Holliday junction DNA helicase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 334

 Score =  341 bits (875), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 170/329 (51%), Positives = 234/329 (71%), Gaps = 3/329 (0%)

Query: 1   MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M DR  ++ +++  E++   L LRP  L ++ GQ    SNL+VFI+AAK R E LDHVL 
Sbjct: 1   MDDR--MVDQSMHDEESSFELSLRPTKLRQYIGQSTIKSNLEVFIKAAKMRQEPLDHVLL 58

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTL+ ++A E+ VN R  SGP I + GDLAA+L++L+  DVLFIDEIHRLS 
Sbjct: 59  FGPPGLGKTTLSNIIANEMEVNIRIISGPSIERPGDLAAILSSLQPGDVLFIDEIHRLSS 118

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMEDF LD+++G+G  ARS++I+L  FTLI ATTR G LT PL+DRFG+ +R
Sbjct: 119 VVEEVLYPAMEDFFLDIVIGKGEEARSIRIDLPPFTLIGATTRAGSLTAPLRDRFGVHLR 178

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y+  +LK I+ R A++ G ++ DE+A E+A RSRGTPR+A RLL+RVRDF +V   +
Sbjct: 179 LEYYQELELKEIIVRTAEVLGTSIDDESAIELAKRSRGTPRVANRLLKRVRDFQQVNEDE 238

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I+     A+L  L +D  G D +D + +  I   + GGPVG++TI+  + E R  IED+
Sbjct: 239 LISIATTRASLQLLQVDDEGLDYIDHKMMNCILEQYKGGPVGLDTIAVSIGEERVTIEDV 298

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
            EP++IQ+GFI+RTPRGR   P A++H  
Sbjct: 299 YEPFLIQKGFIERTPRGRKATPYAFEHFS 327


>gi|289168690|ref|YP_003446959.1| holliday junction DNA helicase RuvB [Streptococcus mitis B6]
 gi|288908257|emb|CBJ23099.1| holliday junction DNA helicase RuvB [Streptococcus mitis B6]
          Length = 323

 Score =  341 bits (875), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 169/309 (54%), Positives = 220/309 (71%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E+ GQ +    L++FIEAAK R EALDHVL  GPPGLGKTT+A V+A ELGVN
Sbjct: 11  LRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANELGVN 70

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGPVI KAGDL A+L +L+  DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G
Sbjct: 71  LKQTSGPVIEKAGDLVAILNDLDPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAG 130

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
             +RSV + L  FTLI ATTR G+L+NPL+ RFGI   + +Y+  DL  IV+R A +  +
Sbjct: 131 EGSRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYDHADLTEIVERTADIFEM 190

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T EAA E+A+RSRGTPRIA RLL+RVRDFA++     I   I D AL  L +D  G D
Sbjct: 191 EITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGNGVIDDLITDKALTMLDVDHEGLD 250

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GFI RT  GR+   
Sbjct: 251 YVDQKILRTMIEIYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRSGRVATA 310

Query: 322 IAWQHLGID 330
            A++HLG +
Sbjct: 311 KAYEHLGYE 319


>gi|55821907|ref|YP_140349.1| Holliday junction DNA helicase RuvB [Streptococcus thermophilus LMG
           18311]
 gi|55823823|ref|YP_142264.1| Holliday junction DNA helicase RuvB [Streptococcus thermophilus
           CNRZ1066]
 gi|81820217|sp|Q5LXQ9|RUVB_STRT1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|81820382|sp|Q5M2B1|RUVB_STRT2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|172045696|sp|Q03IE9|RUVB_STRTD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|55737892|gb|AAV61534.1| Holliday junction DNA helicase, subunit B [Streptococcus
           thermophilus LMG 18311]
 gi|55739808|gb|AAV63449.1| Holliday junction DNA helicase, subunit B [Streptococcus
           thermophilus CNRZ1066]
          Length = 333

 Score =  341 bits (875), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 163/309 (52%), Positives = 223/309 (72%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+  +E+ GQ +    LK+FIEAAK R EALDH L  GPPGLGKTT+A V+A E+GVN
Sbjct: 20  LRPQYFKEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANEMGVN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGP I KAGDL A+L +LE  D+LFIDEIHR+ + VEE+LY AMED+ +D+M+G G
Sbjct: 80  LKQTSGPAIEKAGDLVAILNDLEPGDILFIDEIHRMPMAVEEVLYSAMEDYYIDIMIGAG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            ++RSV ++L  FTL+ ATTR G+L+NPL+ RFGI   + +YE+ DL  IV+R +++  +
Sbjct: 140 ETSRSVHLDLPPFTLVGATTRAGMLSNPLRARFGINGHMEYYELPDLTEIVERTSEIFEM 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T EAA E+A RSRGTPRIA RLL+RVRD+A++     I  +IAD AL  L +D  G D
Sbjct: 200 TITPEAALELARRSRGTPRIANRLLKRVRDYAQIMGDGVIDDKIADQALTMLDVDHEGLD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GFI RT  GR+   
Sbjct: 260 YVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRTGRVATA 319

Query: 322 IAWQHLGID 330
            A++H+G D
Sbjct: 320 KAYEHMGYD 328


>gi|282880544|ref|ZP_06289251.1| Holliday junction DNA helicase RuvB [Prevotella timonensis CRIS
           5C-B1]
 gi|281305647|gb|EFA97700.1| Holliday junction DNA helicase RuvB [Prevotella timonensis CRIS
           5C-B1]
          Length = 344

 Score =  341 bits (875), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 170/313 (54%), Positives = 224/313 (71%), Gaps = 1/313 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP    +F+GQ +   NL++F+EAAK R E LDH L  GPPGLGKTTL+ ++A ELGV 
Sbjct: 23  LRPLKFNDFSGQPKVVENLEIFVEAAKYRGEPLDHTLLHGPPGLGKTTLSNIIANELGVG 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS +VEE LY AMED+++D+M+ +G
Sbjct: 83  FKLTSGPVLDKPGDLAGILTSLEPNDVLFIDEIHRLSPVVEEYLYSAMEDYRIDIMIDKG 142

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSARS++I+L+ FTL+ ATTR GLLT PL+ RFGI + L +YE   L  I+ R A +  +
Sbjct: 143 PSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGINMHLEYYEPPTLVRIITRSATILKV 202

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + +EAA EIA RSRGTPRIA  LLRRVRDFA+V     I   IA  AL  L ID+ G D
Sbjct: 203 PIDEEAAYEIARRSRGTPRIANALLRRVRDFAQVKGNGGINTAIAKYALQALNIDQYGLD 262

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           ++D + L  I   F GGPVG+ TI+  + E    +E++ EP++I +GFI+RTPRGR+   
Sbjct: 263 EIDNKILLTIIDKFRGGPVGLSTIATAIGEDTGTVEEVYEPFLIMEGFIKRTPRGRMATH 322

Query: 322 IAWQHLGIDIPHR 334
           +A++HLG D P++
Sbjct: 323 LAYEHLGRD-PYK 334


>gi|15900193|ref|NP_344797.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           TIGR4]
 gi|111658327|ref|ZP_01409016.1| hypothetical protein SpneT_02000517 [Streptococcus pneumoniae
           TIGR4]
 gi|20140174|sp|Q97SR6|RUVB_STRPN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|14971729|gb|AAK74437.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           TIGR4]
          Length = 332

 Score =  341 bits (875), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 169/313 (53%), Positives = 219/313 (69%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E+ GQ +    L++FIEAAK R EALDHVL  GPPGLGKTT+A V+A ELGVN
Sbjct: 20  LRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANELGVN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGPVI KAGDL A+L +LE  DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G
Sbjct: 80  LKQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
             +RSV + L  FTLI ATTR G+L+NPL+ RFGI   + +Y   DL  IV+R A +  +
Sbjct: 140 EGSRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYAHADLTEIVERTADIFEM 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T EAA E+A+RSRGTPRIA RLL+RVRDFA++     I   I D AL  L +D  G D
Sbjct: 200 EITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGNGVIDDVITDKALTMLDVDHEGLD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   + GGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GFI RT  GR+   
Sbjct: 260 YVDQKILRTMIEMYSGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRSGRVATA 319

Query: 322 IAWQHLGIDIPHR 334
            A++HLG +   +
Sbjct: 320 KAYEHLGYEYSEK 332


>gi|57168275|ref|ZP_00367414.1| Holliday junction DNA helicase RuvB [Campylobacter coli RM2228]
 gi|57020649|gb|EAL57318.1| Holliday junction DNA helicase RuvB [Campylobacter coli RM2228]
          Length = 336

 Score =  341 bits (875), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 163/309 (52%), Positives = 227/309 (73%), Gaps = 1/309 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP   + + GQ     NL VFI AAK R E LDH+LF GP GLGKTTLA +++ E+G N
Sbjct: 20  LRPSNFDGYIGQENIKKNLNVFISAAKKRNECLDHILFSGPAGLGKTTLANIISYEMGAN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            ++T+ P+I K+GDLAA+LTNL + DVLFIDEIHRLS  +EE+LYPAMED++LD+++G G
Sbjct: 80  IKTTAAPMIEKSGDLAAILTNLSEGDVLFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+A+++KI+L +FTLI ATTR G+L+NPL+DRFG+  RL FY+ E+L  I+Q+ A     
Sbjct: 140 PAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDEELAIILQKAALKLNK 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
           +  +EAA EIA RSR TPRIA RLL+RVRDFA+V   +TIT+E A  AL  L ++++GFD
Sbjct: 200 SCENEAALEIAKRSRSTPRIALRLLKRVRDFADVNDEETITKERAKEALNSLGVNELGFD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +DLRYL ++       P+G+ +I+A LSE  + IED+IEPY++  G+I+RT +GR+   
Sbjct: 260 AMDLRYLELLTEA-KRKPIGLSSIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIAST 318

Query: 322 IAWQHLGID 330
            ++  L ++
Sbjct: 319 KSFSVLKLN 327


>gi|284040070|ref|YP_003390000.1| Holliday junction DNA helicase RuvB [Spirosoma linguale DSM 74]
 gi|283819363|gb|ADB41201.1| Holliday junction DNA helicase RuvB [Spirosoma linguale DSM 74]
          Length = 342

 Score =  341 bits (875), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 171/313 (54%), Positives = 221/313 (70%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP + E+FTGQ +A  NL+VF++AA  R EALDHVL  GPPGLGKTTL+ ++A EL   
Sbjct: 24  LRPLSFEDFTGQAKALENLEVFVKAAMQRGEALDHVLLHGPPGLGKTTLSHIIANELSAG 83

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGPV+ K  DLA LLTNL+  DVLFIDEIHRL+ IVEE LY AMED+++D+M+  G
Sbjct: 84  IKMTSGPVLDKPSDLAGLLTNLQPNDVLFIDEIHRLNPIVEEYLYSAMEDYKIDIMLDSG 143

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+AR+V+I L+ FTLI ATTR G+LT PL+ RFGI  RL +Y+ + L TIVQR A + G 
Sbjct: 144 PNARTVQIKLNPFTLIGATTRAGMLTAPLRARFGISSRLEYYDAQLLTTIVQRSAAILGT 203

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + +  A EIA RSRGTPRIA  LLRR RDFA+V     I  +IA+ AL  L +D+ G D
Sbjct: 204 PIDETGAYEIARRSRGTPRIANNLLRRTRDFAQVKGNGYINVDIAEIALSALEVDQNGLD 263

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           ++D R L  I   F GGPVG+ TI+    E  + IE++ EP++IQ+GF++RT RGR    
Sbjct: 264 EMDNRILLTIIEKFKGGPVGLSTIATACGEESETIEEVYEPFLIQEGFLKRTSRGREATE 323

Query: 322 IAWQHLGIDIPHR 334
            A+ HLGI  P++
Sbjct: 324 RAYIHLGIVPPYK 336


>gi|116628600|ref|YP_821219.1| Holliday junction DNA helicase RuvB [Streptococcus thermophilus
           LMD-9]
 gi|116101877|gb|ABJ67023.1| Holliday junction DNA helicase subunit RuvB [Streptococcus
           thermophilus LMD-9]
 gi|312279261|gb|ADQ63918.1| Holliday junction ATP-dependent DNA helicase ruvB [Streptococcus
           thermophilus ND03]
          Length = 318

 Score =  341 bits (875), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 163/309 (52%), Positives = 223/309 (72%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+  +E+ GQ +    LK+FIEAAK R EALDH L  GPPGLGKTT+A V+A E+GVN
Sbjct: 5   LRPQYFKEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANEMGVN 64

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGP I KAGDL A+L +LE  D+LFIDEIHR+ + VEE+LY AMED+ +D+M+G G
Sbjct: 65  LKQTSGPAIEKAGDLVAILNDLEPGDILFIDEIHRMPMAVEEVLYSAMEDYYIDIMIGAG 124

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            ++RSV ++L  FTL+ ATTR G+L+NPL+ RFGI   + +YE+ DL  IV+R +++  +
Sbjct: 125 ETSRSVHLDLPPFTLVGATTRAGMLSNPLRARFGINGHMEYYELPDLTEIVERTSEIFEM 184

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T EAA E+A RSRGTPRIA RLL+RVRD+A++     I  +IAD AL  L +D  G D
Sbjct: 185 TITPEAALELARRSRGTPRIANRLLKRVRDYAQIMGDGVIDDKIADQALTMLDVDHEGLD 244

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GFI RT  GR+   
Sbjct: 245 YVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRTGRVATA 304

Query: 322 IAWQHLGID 330
            A++H+G D
Sbjct: 305 KAYEHMGYD 313


>gi|330719271|ref|ZP_08313871.1| Holliday junction DNA helicase RuvB [Leuconostoc fallax KCTC 3537]
          Length = 351

 Score =  341 bits (875), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 166/308 (53%), Positives = 218/308 (70%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L ++ GQ      L+V+I AAK R EALDHVL  GPPGLGKTTLA ++A E+ V+
Sbjct: 38  LRPQLLNDYIGQSALKEELRVYITAAKQREEALDHVLLFGPPGLGKTTLAMIIANEMAVH 97

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            ++TSGP I K GDL A+L  LE  D+LFIDEIHRL+  VEEILY AMEDF +D+MVG+G
Sbjct: 98  IKTTSGPAIEKPGDLVAVLNELEPGDILFIDEIHRLATNVEEILYSAMEDFYVDIMVGQG 157

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+AR+V   L  FTLI ATTR G+L+ PL+DRFGI   + +Y  ++L+ IV R A +   
Sbjct: 158 PTARAVHFPLPPFTLIGATTRPGMLSKPLRDRFGIINSMQYYNADELQQIVTRSADIFAA 217

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  E A  IA+RSRGTPRIA RLL+RVRDFA+V   K I + I D AL +L +D  G D
Sbjct: 218 PIRSEGALAIALRSRGTPRIANRLLKRVRDFAQVQGKKAIDKMIVDVALKKLRVDDKGLD 277

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           + D ++L  +   + GGPVG+ TISA + E  + +E ++EPY++Q GF+QRTPRGR++  
Sbjct: 278 ETDHKFLQTMIDFYNGGPVGLNTISANIGEESETLETMVEPYLLQIGFLQRTPRGRVVTE 337

Query: 322 IAWQHLGI 329
            A+QHLGI
Sbjct: 338 QAYQHLGI 345


>gi|322410848|gb|EFY01756.1| Holliday junction DNA helicase RuvB [Streptococcus dysgalactiae
           subsp. dysgalactiae ATCC 27957]
          Length = 332

 Score =  341 bits (875), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 166/311 (53%), Positives = 221/311 (71%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E+ GQ +    L +FIEAAK R E+LDHVL  GPPGLGKTT+A V+A ELGVN
Sbjct: 20  LRPKYLREYIGQDKVKEQLNIFIEAAKLRDESLDHVLLFGPPGLGKTTMAFVIANELGVN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGP I KAGDL A+L +LE  DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G
Sbjct: 80  LKQTSGPAIEKAGDLVAILNDLEPGDVLFIDEIHRLPMAVEEVLYSAMEDFYIDIMIGAG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            ++RSV ++L  FTLI ATTR G+L+NPL+ RFGI   + +Y+  DL  I++R A +  +
Sbjct: 140 DTSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYQEADLTEIIERTANIFDM 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  EAA E+A RSRGTPRIA RLL+RVRD+A++     IT +I D AL  L +D+ G D
Sbjct: 200 EIVHEAAQELACRSRGTPRIANRLLKRVRDYAQIVGDGVITAQITDKALTMLDVDREGLD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   + GGPVG+ T+S  ++E RD +ED+ EPY+IQ+GF+ RT  GR++  
Sbjct: 260 YVDQKILRTMIEMYQGGPVGLGTLSVNIAEERDTVEDMYEPYLIQKGFLMRTRTGRVVTE 319

Query: 322 IAWQHLGIDIP 332
            A++HLG   P
Sbjct: 320 KAYRHLGYPYP 330


>gi|307299319|ref|ZP_07579120.1| Holliday junction DNA helicase RuvB [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306915115|gb|EFN45501.1| Holliday junction DNA helicase RuvB [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 349

 Score =  341 bits (875), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 173/333 (51%), Positives = 230/333 (69%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M  E  L+    QED  I  LRP+TL+E+ GQ +    L+V IEAAK R EALDH L  G
Sbjct: 1   MREERFLTPGEVQEDNSIKSLRPKTLQEYIGQNQIRQRLRVAIEAAKVRREALDHTLLAG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A ELG     TSGPVI K GDLAA+LT LE  DVLFIDEIHRL+  V
Sbjct: 61  PPGLGKTTLAHIIANELGSEIYVTSGPVIEKQGDLAAILTGLERDDVLFIDEIHRLNRSV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILY AMEDFQLD+M+G+GPSARS++++L+ FTL+ ATTR G +  PL++RFG+ + + 
Sbjct: 121 EEILYSAMEDFQLDIMIGKGPSARSIRLDLNPFTLVGATTRSGFIGAPLRNRFGMILEME 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY   DLK I+ R A L G ++ D+AA  +A RSRGTPRIA RLLRRVRD   V     I
Sbjct: 181 FYPDRDLKQIILRSATLLGTSIRDDAALLLARRSRGTPRIANRLLRRVRDIVTVEGESEI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T E  ++A+  L+ID  G D +D + L+++  ++ GGP G++ I+A L    + I ++ E
Sbjct: 241 TMETVESAMTLLSIDSEGLDSMDKKLLSILIESYNGGPAGVKAIAASLGIEPETISEVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           P+++Q GF+ RT RGR++   A++HLG+ +  R
Sbjct: 301 PFLLQSGFLVRTSRGRMVTEKAYRHLGLPLEGR 333


>gi|300775969|ref|ZP_07085828.1| crossover junction ATP-dependent DNA helicase RuvB
           [Chryseobacterium gleum ATCC 35910]
 gi|300505102|gb|EFK36241.1| crossover junction ATP-dependent DNA helicase RuvB
           [Chryseobacterium gleum ATCC 35910]
          Length = 340

 Score =  341 bits (874), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 172/330 (52%), Positives = 231/330 (70%), Gaps = 4/330 (1%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           D+E      + QE+     +RP++ ++F GQ +   NL+VF+ AAK R  ALDHVL  GP
Sbjct: 8   DKENYSREELMQEEQ----IRPQSFKDFAGQRKTLENLEVFVTAAKRRGGALDHVLLHGP 63

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++A ELGVN + TSGPV+ K G LA LLTNLE+ DVLFIDEIHRLS +VE
Sbjct: 64  PGLGKTTLANIIANELGVNCKITSGPVLDKPGSLAGLLTNLEENDVLFIDEIHRLSPVVE 123

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E LY AMED+++D+M+  GP+ARSV+I L+ FTL+ ATTR G+LT P+  RFGI  RL +
Sbjct: 124 EYLYSAMEDYKIDIMLETGPNARSVQIGLNPFTLVGATTRSGMLTKPMLARFGIQSRLEY 183

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y IE L  I+QR A++ G+ + ++AA EIA RSRGTPRIA  LLRRVRDFAE+     I 
Sbjct: 184 YSIELLSMIIQRSARVLGVIIYEDAAIEIARRSRGTPRIANALLRRVRDFAEIKGNGEIE 243

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            +I   AL  L +D+ G D++D + + ++  NF G PVGI  ++  + E  + +E++ EP
Sbjct: 244 IKITKYALDSLNVDEFGLDEMDNKIMRVMIENFKGKPVGISALATSIGENPETLEEVYEP 303

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++IQ+GFI RTPRGR +   A++HL I  P
Sbjct: 304 FLIQEGFIIRTPRGREVTDKAYRHLNITRP 333


>gi|224023566|ref|ZP_03641932.1| hypothetical protein BACCOPRO_00269 [Bacteroides coprophilus DSM
           18228]
 gi|224016788|gb|EEF74800.1| hypothetical protein BACCOPRO_00269 [Bacteroides coprophilus DSM
           18228]
          Length = 341

 Score =  341 bits (874), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 170/307 (55%), Positives = 226/307 (73%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP   E+F+GQ +   NL++F++AA+ RAEALDHVL  GPPGLGKTTL+ ++A ELGV 
Sbjct: 23  LRPLQFEDFSGQDKVVDNLRIFVKAARLRAEALDHVLLHGPPGLGKTTLSNIIANELGVG 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS +VEE LY AMED+++D+M+ +G
Sbjct: 83  FKVTSGPVLDKPGDLAGVLTSLEPNDVLFIDEIHRLSPVVEEYLYSAMEDYRIDIMIDKG 142

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSARS++++L+ FTL+ ATTR GLLT PL+ RFGI + L +Y+   L  I+ R A + G+
Sbjct: 143 PSARSIQLDLNPFTLVGATTRSGLLTAPLRARFGINLHLEYYDDTILSRIILRSAGILGV 202

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
               +AA EIA RSRGTPRIA  LLRRVRDFA+V  +  I  EIA  AL  L ID+ G D
Sbjct: 203 PCDVDAAGEIASRSRGTPRIANALLRRVRDFAQVKGSGRIDVEIARYALEALNIDRYGLD 262

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           Q+D + L  I   F GGPVG+ TI+  L E    +E++ EP++I++GF++RTPRGR +  
Sbjct: 263 QIDNKLLCTIIDKFKGGPVGLTTIATALGEDPGTLEEVYEPFLIKEGFLKRTPRGREVTE 322

Query: 322 IAWQHLG 328
           +A++HLG
Sbjct: 323 LAYKHLG 329


>gi|312862354|ref|ZP_07722597.1| Holliday junction DNA helicase RuvB [Streptococcus vestibularis
           F0396]
 gi|311101997|gb|EFQ60197.1| Holliday junction DNA helicase RuvB [Streptococcus vestibularis
           F0396]
          Length = 333

 Score =  341 bits (874), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 163/309 (52%), Positives = 223/309 (72%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+  +E+ GQ +    LK+FIEAAK R EALDH L  GPPGLGKTT+A V+A E+GVN
Sbjct: 20  LRPQYFKEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANEMGVN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGP I KAGDL A+L +LE  D+LFIDEIHR+ + VEE+LY AMED+ +D+M+G G
Sbjct: 80  LKQTSGPAIEKAGDLVAILNDLEPGDILFIDEIHRMPMAVEEVLYSAMEDYYIDIMIGAG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            ++RSV ++L  FTL+ ATTR G+L+NPL+ RFGI   + +YE+ DL  IV+R +++  +
Sbjct: 140 ETSRSVHLDLPPFTLVGATTRAGMLSNPLRARFGINGHMEYYELPDLTEIVERTSEIFEM 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T EAA E+A RSRGTPRIA RLL+RVRD+A++     I  +IAD AL  L +D  G D
Sbjct: 200 TITPEAALELARRSRGTPRIANRLLKRVRDYAQIMGDGIIDDKIADKALTMLDVDHEGLD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GFI RT  GR+   
Sbjct: 260 YVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRTGRVATV 319

Query: 322 IAWQHLGID 330
            A++H+G D
Sbjct: 320 KAYEHMGYD 328


>gi|257453133|ref|ZP_05618432.1| Holliday junction DNA helicase RuvB [Fusobacterium sp. 3_1_5R]
 gi|257467391|ref|ZP_05631702.1| Holliday junction DNA helicase RuvB [Fusobacterium gonidiaformans
           ATCC 25563]
 gi|315918521|ref|ZP_07914761.1| holliday junction DNA helicase ruvB [Fusobacterium gonidiaformans
           ATCC 25563]
 gi|317059668|ref|ZP_07924153.1| holliday junction DNA helicase ruvB [Fusobacterium sp. 3_1_5R]
 gi|313685344|gb|EFS22179.1| holliday junction DNA helicase ruvB [Fusobacterium sp. 3_1_5R]
 gi|313692396|gb|EFS29231.1| holliday junction DNA helicase ruvB [Fusobacterium gonidiaformans
           ATCC 25563]
          Length = 334

 Score =  341 bits (874), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 170/309 (55%), Positives = 222/309 (71%), Gaps = 3/309 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP++  E+ GQ      + + I+AAK R   +DHVL  GPPGLGKTTLA V+A E+G N
Sbjct: 20  LRPKSFREYIGQESLKEKIFISIQAAKRRGSVIDHVLLYGPPGLGKTTLAGVIANEMGAN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGPV+ KAGDLAA+LT+LE+ DVLFIDEIHRL+  VEEILYPAMED +LD+++G+G
Sbjct: 80  LKITSGPVLEKAGDLAAILTSLEENDVLFIDEIHRLNTAVEEILYPAMEDKELDIIIGKG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS++I L  FTLI ATTR GLL+ PL+DRFGI  ++ +Y  E++K I+ RG K+  +
Sbjct: 140 PAARSIRIELPNFTLIGATTRAGLLSAPLRDRFGISHKMEYYTEEEVKEIILRGGKILEI 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            V  E A E+A RSRGTPRIA RLL+RVRD+AE+     IT+EIA  AL  L +D  G D
Sbjct: 200 EVEGEGAEELAKRSRGTPRIANRLLKRVRDYAEIRGKGIITQEIAIQALNLLGVDMEGLD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            LD   L  +  N+GGGPVGIET+S  L E R  +E++ EPY+IQ+GF++RT RGR+   
Sbjct: 260 DLDRNILQAMFENYGGGPVGIETLSLLLGEDRRTLEEVYEPYLIQKGFLKRTNRGRIATS 319

Query: 322 IA---WQHL 327
            A   W+ +
Sbjct: 320 KAIAYWEKM 328


>gi|307711004|ref|ZP_07647426.1| holliday junction DNA helicase RuvB [Streptococcus mitis SK321]
 gi|307616966|gb|EFN96144.1| holliday junction DNA helicase RuvB [Streptococcus mitis SK321]
          Length = 323

 Score =  341 bits (874), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 169/309 (54%), Positives = 218/309 (70%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E+ GQ +    L++FIEAAK R EALDHVL  GPPGLGKTT+A V+A ELGVN
Sbjct: 11  LRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANELGVN 70

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGPVI KAGDL A+L +LE  DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G
Sbjct: 71  LKQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAG 130

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
             +RSV + L  FTLI ATTR G+L+NPL+ RFGI   + +Y   DL  IV+R A +  +
Sbjct: 131 EGSRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYAHADLTEIVERTADIFEM 190

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T EAA E+A+RSRGTPRIA RLL+RVRDFA++     I   I D AL  L +D  G D
Sbjct: 191 EITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGDGVIDDVITDKALTMLDVDHEGLD 250

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GFI RT  GR+   
Sbjct: 251 YVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRSGRVATA 310

Query: 322 IAWQHLGID 330
             ++HLG +
Sbjct: 311 KTYEHLGYE 319


>gi|69250108|ref|ZP_00605100.1| Holliday junction DNA helicase RuvB [Enterococcus faecium DO]
 gi|257878808|ref|ZP_05658461.1| holliday junction DNA helicase RuvB [Enterococcus faecium
           1,230,933]
 gi|257881446|ref|ZP_05661099.1| holliday junction DNA helicase RuvB [Enterococcus faecium
           1,231,502]
 gi|257885717|ref|ZP_05665370.1| holliday junction DNA helicase RuvB [Enterococcus faecium
           1,231,501]
 gi|257890667|ref|ZP_05670320.1| holliday junction DNA helicase RuvB [Enterococcus faecium
           1,231,410]
 gi|258615121|ref|ZP_05712891.1| Holliday junction DNA helicase RuvB [Enterococcus faecium DO]
 gi|260558374|ref|ZP_05830570.1| Holliday junction DNA helicase RuvB [Enterococcus faecium C68]
 gi|261207081|ref|ZP_05921770.1| Holliday junction DNA helicase RuvB [Enterococcus faecium TC 6]
 gi|289565917|ref|ZP_06446357.1| Holliday junction DNA helicase RuvB [Enterococcus faecium D344SRF]
 gi|293556857|ref|ZP_06675418.1| holliday junction DNA helicase RuvB [Enterococcus faecium E1039]
 gi|293563769|ref|ZP_06678208.1| holliday junction DNA helicase RuvB [Enterococcus faecium E1162]
 gi|293567840|ref|ZP_06679181.1| holliday junction DNA helicase RuvB [Enterococcus faecium E1071]
 gi|294614615|ref|ZP_06694519.1| holliday junction DNA helicase RuvB [Enterococcus faecium E1636]
 gi|294618497|ref|ZP_06698061.1| holliday junction DNA helicase RuvB [Enterococcus faecium E1679]
 gi|294621206|ref|ZP_06700391.1| holliday junction DNA helicase RuvB [Enterococcus faecium U0317]
 gi|314938832|ref|ZP_07846103.1| Holliday junction DNA helicase RuvB [Enterococcus faecium
           TX0133a04]
 gi|314943638|ref|ZP_07850392.1| Holliday junction DNA helicase RuvB [Enterococcus faecium TX0133C]
 gi|314948717|ref|ZP_07852090.1| Holliday junction DNA helicase RuvB [Enterococcus faecium TX0082]
 gi|314952167|ref|ZP_07855185.1| Holliday junction DNA helicase RuvB [Enterococcus faecium TX0133A]
 gi|314991859|ref|ZP_07857316.1| Holliday junction DNA helicase RuvB [Enterococcus faecium TX0133B]
 gi|314996572|ref|ZP_07861607.1| Holliday junction DNA helicase RuvB [Enterococcus faecium
           TX0133a01]
 gi|68194010|gb|EAN08567.1| Holliday junction DNA helicase RuvB [Enterococcus faecium DO]
 gi|257813036|gb|EEV41794.1| holliday junction DNA helicase RuvB [Enterococcus faecium
           1,230,933]
 gi|257817104|gb|EEV44432.1| holliday junction DNA helicase RuvB [Enterococcus faecium
           1,231,502]
 gi|257821573|gb|EEV48703.1| holliday junction DNA helicase RuvB [Enterococcus faecium
           1,231,501]
 gi|257827027|gb|EEV53653.1| holliday junction DNA helicase RuvB [Enterococcus faecium
           1,231,410]
 gi|260075548|gb|EEW63854.1| Holliday junction DNA helicase RuvB [Enterococcus faecium C68]
 gi|260078709|gb|EEW66411.1| Holliday junction DNA helicase RuvB [Enterococcus faecium TC 6]
 gi|289162290|gb|EFD10150.1| Holliday junction DNA helicase RuvB [Enterococcus faecium D344SRF]
 gi|291589425|gb|EFF21232.1| holliday junction DNA helicase RuvB [Enterococcus faecium E1071]
 gi|291592517|gb|EFF24122.1| holliday junction DNA helicase RuvB [Enterococcus faecium E1636]
 gi|291595254|gb|EFF26583.1| holliday junction DNA helicase RuvB [Enterococcus faecium E1679]
 gi|291599202|gb|EFF30234.1| holliday junction DNA helicase RuvB [Enterococcus faecium U0317]
 gi|291600941|gb|EFF31232.1| holliday junction DNA helicase RuvB [Enterococcus faecium E1039]
 gi|291604250|gb|EFF33745.1| holliday junction DNA helicase RuvB [Enterococcus faecium E1162]
 gi|313589261|gb|EFR68106.1| Holliday junction DNA helicase RuvB [Enterococcus faecium
           TX0133a01]
 gi|313593564|gb|EFR72409.1| Holliday junction DNA helicase RuvB [Enterococcus faecium TX0133B]
 gi|313595699|gb|EFR74544.1| Holliday junction DNA helicase RuvB [Enterococcus faecium TX0133A]
 gi|313597675|gb|EFR76520.1| Holliday junction DNA helicase RuvB [Enterococcus faecium TX0133C]
 gi|313641843|gb|EFS06423.1| Holliday junction DNA helicase RuvB [Enterococcus faecium
           TX0133a04]
 gi|313644889|gb|EFS09469.1| Holliday junction DNA helicase RuvB [Enterococcus faecium TX0082]
          Length = 333

 Score =  341 bits (874), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 170/330 (51%), Positives = 226/330 (68%), Gaps = 1/330 (0%)

Query: 2   MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M  E LLS    + +  +   LRP+ L ++ GQ +    L+++IEAA+ R E LDHVL  
Sbjct: 1   MTDEYLLSPESGENELSLEKSLRPQLLSQYIGQRKVKQELQIYIEAARNREEPLDHVLLY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTT+A V+A E+ VN R+TSGP I + GDL A+L  LE  DVLFIDEIHRL  +
Sbjct: 61  GPPGLGKTTMAMVIANEMTVNIRTTSGPAIERPGDLVAILNELEAGDVLFIDEIHRLPRV 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LY AMEDF +D+MVG+GP+A  V   L  FTLI ATTR G+L+ PL+DRFGI   +
Sbjct: 121 VEEMLYSAMEDFYVDIMVGQGPTAHPVHFPLPPFTLIGATTRAGMLSAPLRDRFGIISHM 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y+ +DL+ IV R + +    + +E A EIA RSRGTPRIA RLL+RVRDFA+V     
Sbjct: 181 EYYDEQDLQEIVLRSSDIFQTEIIEEGALEIARRSRGTPRIANRLLKRVRDFAQVQGDGK 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I R IAD AL  L +D+ G D +D + L  +   +GGGPVG+ T+S  + E R+ +ED+ 
Sbjct: 241 IDRPIADQALTLLQVDQAGLDYVDQKLLRTMIELYGGGPVGLSTLSVNIGEERETVEDMY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           EPY+IQ+GF++RTPRGR+    A++H G D
Sbjct: 301 EPYLIQKGFLKRTPRGRIATAYAYEHFGYD 330


>gi|328950019|ref|YP_004367354.1| Holliday junction ATP-dependent DNA helicase ruvB [Marinithermus
           hydrothermalis DSM 14884]
 gi|328450343|gb|AEB11244.1| Holliday junction ATP-dependent DNA helicase ruvB [Marinithermus
           hydrothermalis DSM 14884]
          Length = 325

 Score =  341 bits (874), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 176/312 (56%), Positives = 225/312 (72%), Gaps = 1/312 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+TL+E+ GQ      L+V+++AAKAR E LDH+L  GPPGLGKTTLA V+A ELGVN
Sbjct: 6   LRPQTLDEYVGQTRLKEKLRVYLQAAKARGEPLDHMLLFGPPGLGKTTLAHVIANELGVN 65

Query: 82  FRSTSGPVIAKAGDLAALLTN-LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
            R TSGP I K GDLAA+LTN LE+ D+LFIDEIHRLS   EE LYPAMEDF++D+++G+
Sbjct: 66  IRVTSGPAIEKPGDLAAILTNSLEEGDILFIDEIHRLSRTAEEHLYPAMEDFKIDIVLGQ 125

Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
           GP+AR++++ L RFTLI ATTR GL+++PL+ RFGI   L FY  E+L   V R A+L G
Sbjct: 126 GPAARTLRLELPRFTLIGATTRPGLISSPLRSRFGIIEHLEFYTPEELAEGVARDARLLG 185

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGF 260
           L +  EAA EI  R+RGT RIA RL RRVRDFAEVA    +T E A  AL  L +D +G 
Sbjct: 186 LEIEHEAALEIGRRARGTMRIAKRLFRRVRDFAEVAGDPRVTLERAREALDALGLDALGL 245

Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320
           D  D + L  I   F GGPVG+ET++  LSE    +E++ EP++IQ G I+RTPRGR+  
Sbjct: 246 DARDRKILETILTRFAGGPVGLETLATALSEDPQTLEEVHEPFLIQLGLIKRTPRGRVAT 305

Query: 321 PIAWQHLGIDIP 332
             A++HLG+ +P
Sbjct: 306 ERAYRHLGLPVP 317


>gi|312866523|ref|ZP_07726740.1| Holliday junction DNA helicase RuvB [Streptococcus downei F0415]
 gi|311097954|gb|EFQ56181.1| Holliday junction DNA helicase RuvB [Streptococcus downei F0415]
          Length = 332

 Score =  341 bits (874), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 167/309 (54%), Positives = 224/309 (72%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+T +E+ GQ +    L +FIEAAK R EALDHVL  GPPGLGKTT+A V+A ELGVN
Sbjct: 20  LRPQTFKEYIGQDKVKDQLAIFIEAAKLRDEALDHVLLFGPPGLGKTTMAFVIANELGVN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGP I KAGDL A+L +LE  DVLFIDEIHR+ + VEE+LY AMEDF +D+M+G G
Sbjct: 80  LKQTSGPAIEKAGDLVAILNDLEPGDVLFIDEIHRMPMAVEEVLYSAMEDFYIDIMIGAG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            ++RSV ++L  FTLI ATTR G+L+NPL+ RFGI   + +YE  DL  IV+R A++   
Sbjct: 140 EASRSVHLDLPPFTLIGATTRAGMLSNPLRARFGINGHMEYYEEVDLTEIVERTAEIFEA 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T EAA ++A RSRGTPRIA RLL+RVRD+A++     I  +IAD AL  L +D+ G D
Sbjct: 200 EITHEAAIQLAKRSRGTPRIANRLLKRVRDYAQIIGDGLIDNKIADKALTLLDVDQEGLD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GF+ RT  GR+   
Sbjct: 260 YIDQKILRTMIEMYGGGPVGLGTLSINIAEERETVEDMYEPYLIQKGFMMRTRSGRVATA 319

Query: 322 IAWQHLGID 330
            A++HLG++
Sbjct: 320 KAYEHLGLE 328


>gi|22299796|ref|NP_683043.1| Holliday junction DNA helicase B [Thermosynechococcus elongatus
           BP-1]
 gi|32130027|sp|Q8DGR1|RUVB_THEEB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|22295980|dbj|BAC09805.1| Holliday junction DNA helicase [Thermosynechococcus elongatus BP-1]
          Length = 363

 Score =  341 bits (874), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 171/311 (54%), Positives = 220/311 (70%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP +L+++ GQ E    L + I+AAKAR E LDH+L  GPPGLGKTT+A ++A E+GVN
Sbjct: 38  LRPHSLQDYIGQQELKEVLHIAIQAAKARQEPLDHLLLYGPPGLGKTTIALILAAEMGVN 97

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TS P + +  D+  LL NL+  D+LFIDEIHRLS + EE+LYPAMEDF LDL VG+ 
Sbjct: 98  CKVTSAPALERPRDIVGLLVNLQAGDILFIDEIHRLSRMTEELLYPAMEDFYLDLTVGKQ 157

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            +AR  ++ L+RFTL+ ATTR G LT+PL+DRFG+  RL FY  E+L+ IVQRGA L   
Sbjct: 158 QTARPRRLKLNRFTLVGATTRAGALTSPLRDRFGLVQRLRFYHPEELQQIVQRGAALLQT 217

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T EAA EI  RSRGTPRIA RLL+RVRD+A V H   IT ++A AAL  L +D  G D
Sbjct: 218 PITPEAALEIGRRSRGTPRIALRLLKRVRDYAAVKHDGRITLDVARAALELLHVDPAGLD 277

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             D R L ++  ++ GGPVGIET++A   E    IE++ EPY++Q G++QRTPRGR+  P
Sbjct: 278 GSDRRLLRVMIESYQGGPVGIETLAAATGEDVQTIEEVYEPYLLQMGYLQRTPRGRVATP 337

Query: 322 IAWQHLGIDIP 332
            AWQHLG   P
Sbjct: 338 RAWQHLGYTAP 348


>gi|332202173|gb|EGJ16242.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           GA41317]
          Length = 323

 Score =  340 bits (873), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 169/313 (53%), Positives = 219/313 (69%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E+ GQ +    L++FIEAAK R EALDHVL  GPPGLGKTT+A V+A ELGVN
Sbjct: 11  LRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANELGVN 70

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGPVI KAGDL A+L +LE  DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G
Sbjct: 71  LKQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAG 130

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
             +RSV + L  FTLI ATTR G+L+NPL+ RFGI   + +Y   DL  IV+R A +  +
Sbjct: 131 EGSRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYAHADLTEIVERTADIFEM 190

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T EAA E+A+RSRGTPRIA RLL+RVRDFA++     I   I D AL  L +D  G D
Sbjct: 191 EITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGNGVIDDVITDKALTMLDVDHEGLD 250

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   + GGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GFI RT  GR+   
Sbjct: 251 YVDQKILRTMIEMYSGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRSGRVATA 310

Query: 322 IAWQHLGIDIPHR 334
            A++HLG +   +
Sbjct: 311 KAYEHLGYEYSEK 323


>gi|228475179|ref|ZP_04059905.1| holliday junction DNA helicase RuvB [Staphylococcus hominis SK119]
 gi|228270790|gb|EEK12192.1| holliday junction DNA helicase RuvB [Staphylococcus hominis SK119]
          Length = 331

 Score =  340 bits (873), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 166/328 (50%), Positives = 230/328 (70%), Gaps = 3/328 (0%)

Query: 1   MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M DR  ++ +++  E++     LRP  L+++ GQ    +NL++FI+AAK R E LDHVL 
Sbjct: 1   MDDR--MVDQSLHNEESSFEFSLRPTKLKQYIGQSSIKNNLEIFIKAAKLRDEPLDHVLL 58

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTL+ ++A E+ VN R+ SGP + + GDLAA+L+ L+  DVLFIDEIHRLS 
Sbjct: 59  FGPPGLGKTTLSNIIANEMEVNIRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSS 118

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LY AMEDF LD+++G+G  ARS++I+L  FTL+ ATTR G LT PL+DRFG+ +R
Sbjct: 119 VVEEVLYSAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATTRAGSLTGPLRDRFGVHLR 178

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y   DLK I+ R A++ G  + DE+A E+A RSRGTPR+A RLL+RVRDF +V   +
Sbjct: 179 LEYYSESDLKEIIIRTAEVLGTKIDDESAVELAKRSRGTPRVANRLLKRVRDFQQVNEDE 238

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  E    AL  L +D  G D +D + +  I   + GGPVG++TI+  + E R  IED+
Sbjct: 239 QIYIETTKQALNLLQVDDEGLDYIDHKMMNCIINQYNGGPVGLDTIAVSIGEERITIEDV 298

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHL 327
            EP++IQ+GFI+RTPRGR   P A++H 
Sbjct: 299 YEPFLIQKGFIERTPRGRKATPFAYEHF 326


>gi|148996682|ref|ZP_01824400.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           SP11-BS70]
 gi|168576313|ref|ZP_02722196.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           MLV-016]
 gi|194397680|ref|YP_002036959.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae G54]
 gi|307066936|ref|YP_003875902.1| Holliday junction resolvasome helicase subunit [Streptococcus
           pneumoniae AP200]
 gi|226698785|sp|B5E6T3|RUVB_STRP4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|147757257|gb|EDK64296.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           SP11-BS70]
 gi|183577783|gb|EDT98311.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           MLV-016]
 gi|194357347|gb|ACF55795.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae G54]
 gi|306408473|gb|ADM83900.1| Holliday junction resolvasome, helicase subunit [Streptococcus
           pneumoniae AP200]
          Length = 332

 Score =  340 bits (873), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 169/313 (53%), Positives = 218/313 (69%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E+ GQ +    L++FIEAAK R EALDHVL  GPPGLGKTT+A V+A ELGVN
Sbjct: 20  LRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANELGVN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGPVI KAGDL A+L  LE  DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G
Sbjct: 80  LKQTSGPVIEKAGDLVAILNELEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
             +RSV + L  FTLI ATTR G+L+NPL+ RFGI   + +Y   DL  IV+R A +  +
Sbjct: 140 EGSRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYAHADLTEIVERTADIFEM 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T EAA E+A+RSRGTPRIA RLL+RVRDFA++     I   I D AL  L +D  G D
Sbjct: 200 EITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGNGVIDDIITDKALTMLDVDHEGLD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   + GGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GFI RT  GR+   
Sbjct: 260 YVDQKILRTMIEMYSGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRSGRVATA 319

Query: 322 IAWQHLGIDIPHR 334
            A++HLG +   +
Sbjct: 320 KAYEHLGYEYSEK 332


>gi|325479576|gb|EGC82672.1| Holliday junction DNA helicase RuvB [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 335

 Score =  340 bits (873), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 165/310 (53%), Positives = 225/310 (72%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L+++ GQ +    L +FI+++ +R E LDHVL  GPPGLGKTTL+ ++A ELGVN
Sbjct: 24  IRPKWLKDYIGQDKVKEKLDIFIKSSLSRNEPLDHVLLQGPPGLGKTTLSTIIANELGVN 83

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGP I +  DLA++LTNL   DVLFIDEIHR++  VEEILY AMEDF LD++VG+G
Sbjct: 84  LRVTSGPAIERPSDLASILTNLSSGDVLFIDEIHRINRSVEEILYSAMEDFVLDIIVGKG 143

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+A+S++I+L +FTLI ATTR G+L+ PL+DRFG+ + LN Y+ +DL TIV+R A++  +
Sbjct: 144 PNAQSIRIDLEKFTLIGATTRAGMLSAPLRDRFGVLLALNLYDTKDLTTIVKRSAQILDI 203

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + ++ A EIA RSRGTPRIA RLL+RVRDFA V   + I  + +   L  L ID MG D
Sbjct: 204 PIDEKGAIEIARRSRGTPRIANRLLKRVRDFAIVKADEKIDYDTSKKGLELLEIDPMGLD 263

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + +  +  NFGGGPVG++TI+A        IED+ EPY++Q GFI RTPRGR+L  
Sbjct: 264 TMDKKIILTMYDNFGGGPVGVDTIAASTGIENVTIEDVYEPYLLQIGFISRTPRGRVLTR 323

Query: 322 IAWQHLGIDI 331
            A++H G+ I
Sbjct: 324 KAYEHYGLKI 333


>gi|328957016|ref|YP_004374402.1| Holliday junction ATP-dependent DNA helicase RuvB [Carnobacterium
           sp. 17-4]
 gi|328673340|gb|AEB29386.1| Holliday junction ATP-dependent DNA helicase RuvB [Carnobacterium
           sp. 17-4]
          Length = 337

 Score =  340 bits (873), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 169/319 (52%), Positives = 222/319 (69%), Gaps = 3/319 (0%)

Query: 13  SQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           S    +ISL   LRP  L E+ GQ +    L ++IEAAK R EALDHVL  GPPGLGKTT
Sbjct: 12  SSTTEEISLEKSLRPHYLAEYIGQEKVKRELSIYIEAAKNREEALDHVLLYGPPGLGKTT 71

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           +A V++ E+GV  R+TSGP I KAGDL ALL  LE  DVLFIDEIHR+  +VEE+LY AM
Sbjct: 72  MAMVISNEMGVAIRTTSGPAIEKAGDLVALLNELEAGDVLFIDEIHRMPRLVEEMLYSAM 131

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           ED+ +D++VG+GP+A  V   L  FTL+ ATTR GLL+ PL+DRFGI   + +Y +E+L 
Sbjct: 132 EDYFVDIIVGQGPTAHPVHFPLPPFTLVGATTRAGLLSAPLRDRFGIVSHMEYYTVEELS 191

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            IV R A +    + +  A EIA RSRGTPR+A RLL+RVRD+A+V     I ++IAD A
Sbjct: 192 DIVLRSADIFNTEIIESGAIEIARRSRGTPRVANRLLKRVRDYAQVESNGVIKKQIADEA 251

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           L  L ID+ G D +D + L  +  N+ GGPVG+ TI+A + E  + IED++EPY++Q GF
Sbjct: 252 LAMLRIDQEGLDFVDQKLLKTMIENYHGGPVGLSTIAANIGEEIETIEDMVEPYLLQAGF 311

Query: 310 IQRTPRGRLLMPIAWQHLG 328
           +QRTPRGR++  + + HLG
Sbjct: 312 LQRTPRGRIVTHMGYTHLG 330


>gi|238926807|ref|ZP_04658567.1| crossover junction endoribonuclease subunit B [Selenomonas flueggei
           ATCC 43531]
 gi|238885339|gb|EEQ48977.1| crossover junction endoribonuclease subunit B [Selenomonas flueggei
           ATCC 43531]
          Length = 345

 Score =  340 bits (873), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 170/332 (51%), Positives = 231/332 (69%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M + E ++S      D     LRPR L E+ GQ    SNL  FI+AA +R EALDHVL  
Sbjct: 4   MGEDEEIISYEEQSTDGWQYSLRPRRLSEYIGQDRVKSNLSKFIQAALSRGEALDHVLLY 63

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A E+G NFR TS P I + GDLA+LLTNL++ DVLFIDEIHRLS  
Sbjct: 64  GPPGLGKTTLAAIIANEMGANFRQTSAPAIERQGDLASLLTNLQEHDVLFIDEIHRLSHH 123

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILY AMED  +D+++G+GPSARS++++L+ FTL+ ATT+ G L+ PL+DRFGI  RL
Sbjct: 124 VEEILYSAMEDHAIDIIIGKGPSARSIRLDLAPFTLVGATTKTGSLSAPLRDRFGIQARL 183

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y  + L  I++R A++  + +  + A EIA RSRGTPR+A R+L+RVRD A+VA  + 
Sbjct: 184 EYYTTDALLLIIERTAEILSVHIERDGALEIARRSRGTPRVANRILKRVRDIAQVAGEEI 243

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I+R +   AL  L +D+ G +  D   L ++ + F GGPVG++T++A LSE  + IED+ 
Sbjct: 244 ISRSVTIDALDTLEVDECGLESKDRYMLEVMIQKFSGGPVGLKTLAAALSEMTETIEDVY 303

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EPY+IQ GFI RT RGR++    ++H+G   P
Sbjct: 304 EPYLIQLGFIARTARGRVVTQGGYEHIGAPYP 335


>gi|15902282|ref|NP_357832.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae R6]
 gi|116515806|ref|YP_815759.1| Holliday junction DNA helicase B [Streptococcus pneumoniae D39]
 gi|148987999|ref|ZP_01819462.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           SP6-BS73]
 gi|149001627|ref|ZP_01826600.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           SP14-BS69]
 gi|149006013|ref|ZP_01829742.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           SP18-BS74]
 gi|149017952|ref|ZP_01834411.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           SP23-BS72]
 gi|168484641|ref|ZP_02709593.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           CDC1873-00]
 gi|168492214|ref|ZP_02716357.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           CDC0288-04]
 gi|169834021|ref|YP_001693787.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           Hungary19A-6]
 gi|225856017|ref|YP_002737528.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           P1031]
 gi|225858109|ref|YP_002739619.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           70585]
 gi|225860297|ref|YP_002741806.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|237649671|ref|ZP_04523923.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae CCRI
           1974]
 gi|237821371|ref|ZP_04597216.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae CCRI
           1974M2]
 gi|298229421|ref|ZP_06963102.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae str.
           Canada MDR_19F]
 gi|298256040|ref|ZP_06979626.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae str.
           Canada MDR_19A]
 gi|298502076|ref|YP_003724016.1| Holliday junction DNA helicase B [Streptococcus pneumoniae
           TCH8431/19A]
 gi|32171626|sp|Q8CWU7|RUVB_STRR6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|122279355|sp|Q04MI9|RUVB_STRP2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|238688308|sp|B1I8Y6|RUVB_STRPI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|254767442|sp|C1CB34|RUVB_STRP7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|254767445|sp|C1CIE0|RUVB_STRZP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|254767446|sp|C1CPD4|RUVB_STRZT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|15457786|gb|AAK99042.1| Branch migration of Holliday structures [Streptococcus pneumoniae
           R6]
 gi|116076382|gb|ABJ54102.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae D39]
 gi|147760085|gb|EDK67074.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           SP14-BS69]
 gi|147762369|gb|EDK69330.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           SP18-BS74]
 gi|147926463|gb|EDK77536.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           SP6-BS73]
 gi|147931516|gb|EDK82494.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           SP23-BS72]
 gi|168996523|gb|ACA37135.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           Hungary19A-6]
 gi|172042151|gb|EDT50197.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           CDC1873-00]
 gi|183573573|gb|EDT94101.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           CDC0288-04]
 gi|225721600|gb|ACO17454.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           70585]
 gi|225726046|gb|ACO21898.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           P1031]
 gi|225726645|gb|ACO22496.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298237671|gb|ADI68802.1| Holliday junction DNA helicase B [Streptococcus pneumoniae
           TCH8431/19A]
          Length = 332

 Score =  340 bits (873), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 169/313 (53%), Positives = 218/313 (69%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E+ GQ +    L++FIEAAK R EALDHVL  GPPGLGKTT+A V+A ELGVN
Sbjct: 20  LRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANELGVN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGPVI KAGDL A+L  LE  DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G
Sbjct: 80  LKQTSGPVIEKAGDLVAILNELEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
             +RSV + L  FTLI ATTR G+L+NPL+ RFGI   + +Y   DL  IV+R A +  +
Sbjct: 140 EGSRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYAHADLTEIVERTADIFEM 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T EAA E+A+RSRGTPRIA RLL+RVRDFA++     I   I D AL  L +D  G D
Sbjct: 200 EITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGNGVIDDIITDKALTMLDVDHEGLD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   + GGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GFI RT  GR+   
Sbjct: 260 YVDQKILRTMIEMYSGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRSGRVATA 319

Query: 322 IAWQHLGIDIPHR 334
            A++HLG +   +
Sbjct: 320 KAYEHLGYEYSEK 332


>gi|253583196|ref|ZP_04860394.1| holliday junction DNA helicase ruvB [Fusobacterium varium ATCC
           27725]
 gi|251833768|gb|EES62331.1| holliday junction DNA helicase ruvB [Fusobacterium varium ATCC
           27725]
          Length = 340

 Score =  340 bits (872), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 165/319 (51%), Positives = 228/319 (71%), Gaps = 3/319 (0%)

Query: 12  VSQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
            S+ + DI +   LRPR  +++ GQV     + + IEAAK R  ++DH+L  GPPGLGKT
Sbjct: 7   TSEMENDIEIQKTLRPRCFKDYIGQVSLKEKMSISIEAAKKRGGSIDHILLYGPPGLGKT 66

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           TLA V+A E+G N + TSGPV+ +AGDLAA+LT+LE+ D+LFIDEIHRL+  VEEILYPA
Sbjct: 67  TLAGVIATEMGANLKITSGPVLERAGDLAAILTSLEENDILFIDEIHRLNNTVEEILYPA 126

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           MED +LD+++G+GPSARS++I L  FTLI ATTR GLL++PL+DRFG+  R+ +Y  E++
Sbjct: 127 MEDKELDIIIGKGPSARSIRIELPSFTLIGATTRAGLLSSPLRDRFGVTHRMEYYSEEEI 186

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             I+ RG  + G+ +  + A E+A RSRGTPRIA RLL+RVRDF E+     I REI+  
Sbjct: 187 TDIILRGGNILGVKIEIDGAKELASRSRGTPRIANRLLKRVRDFCEIRGNGVIDREISLK 246

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL  L ID  G D LD   +  I  N+GGGPVGI+T+S  L E +  +E++ EPY+++ G
Sbjct: 247 ALEILGIDSAGLDDLDRDIVNAIIDNYGGGPVGIDTLSLMLGEDKRTLEEVYEPYLVKIG 306

Query: 309 FIQRTPRGRLLMPIAWQHL 327
           +++RT RGR++   A++H 
Sbjct: 307 YLKRTNRGRMVTEKAYEHF 325


>gi|313887103|ref|ZP_07820799.1| Holliday junction DNA helicase RuvB [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|332300438|ref|YP_004442359.1| Holliday junction ATP-dependent DNA helicase ruvB [Porphyromonas
           asaccharolytica DSM 20707]
 gi|312923332|gb|EFR34145.1| Holliday junction DNA helicase RuvB [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|332177501|gb|AEE13191.1| Holliday junction ATP-dependent DNA helicase ruvB [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 348

 Score =  340 bits (872), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 173/307 (56%), Positives = 217/307 (70%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP   + F GQ     NLKVF+EAA+ R EALDHVL  GPPGLGKTTL+ +++ ELGV 
Sbjct: 27  LRPSYFDSFRGQGHVVDNLKVFVEAARRRDEALDHVLLYGPPGLGKTTLSHIISHELGVG 86

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGPV+ KAGDLA LLT+LE RDVLFIDEIHRLS  VEE LY AMEDF++DLM+ +G
Sbjct: 87  MKITSGPVLEKAGDLAGLLTSLEPRDVLFIDEIHRLSHTVEEYLYSAMEDFRIDLMIDKG 146

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P ARS++I+L+ FTL+ ATTR GLLT PL+DRFGI + L +Y+++ L  IV R A++  +
Sbjct: 147 PGARSIQIDLNPFTLVGATTRSGLLTAPLRDRFGINLHLEYYDVDTLTDIVLRSARILEV 206

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
              +EAA  IA+RSRGTPRIA  LL+RVRDFA+V     I  +I   AL  L IDK G D
Sbjct: 207 PCEEEAARGIALRSRGTPRIANALLKRVRDFAQVKGNGVIDSDITTVALEALHIDKHGLD 266

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             D + L  I   F GGPVG+ TI+  + E    IE++ EP++IQ+GFIQRT  GR    
Sbjct: 267 HTDHKLLKTIIDKFDGGPVGLTTIATAMGEDPGTIEEVYEPFLIQEGFIQRTRTGRQATR 326

Query: 322 IAWQHLG 328
           +A+ HLG
Sbjct: 327 LAYAHLG 333


>gi|325281458|ref|YP_004254000.1| Holliday junction ATP-dependent DNA helicase ruvB [Odoribacter
           splanchnicus DSM 20712]
 gi|324313267|gb|ADY33820.1| Holliday junction ATP-dependent DNA helicase ruvB [Odoribacter
           splanchnicus DSM 20712]
          Length = 342

 Score =  340 bits (872), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 168/307 (54%), Positives = 221/307 (71%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP    +F GQ +   NL++F+ AAK R E+LDHV+  GPPGLGKTTL+ ++A ELGV 
Sbjct: 22  LRPLNFGDFQGQKKIVENLEIFVRAAKMRGESLDHVILHGPPGLGKTTLSAIIANELGVG 81

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGPV+ K GDLA LLTNLE+ DVLFIDEIHRLS +VEE LY AMED+++D+M+ +G
Sbjct: 82  IKITSGPVLDKPGDLAGLLTNLEENDVLFIDEIHRLSPVVEEYLYSAMEDYRIDIMIDKG 141

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARSV+I ++ FTLI ATTR GLLT PL+ RFGI   L +Y+ + L  I+ R A +  +
Sbjct: 142 PAARSVQIQINPFTLIGATTRSGLLTAPLRARFGINCHLEYYDTDILSGIISRSAAILNV 201

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T +AA EIA RSRGTPRIA  LLRRVRDFA V    +I R+I   AL  L IDK G D
Sbjct: 202 GITGQAAMEIASRSRGTPRIANALLRRVRDFAMVKGNGSIDRDITRYALEALNIDKYGLD 261

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           ++D + L  I   F GGPVG+ TI+  + E    +E++ EP++I++GFI+RTPRGR +  
Sbjct: 262 EMDNKILLTIIEKFKGGPVGLTTIATAVGEDAGTLEEVYEPFLIKEGFIKRTPRGREVTD 321

Query: 322 IAWQHLG 328
           +A++HLG
Sbjct: 322 LAYKHLG 328


>gi|305431583|ref|ZP_07400757.1| crossover junction ATP-dependent DNA helicase RuvB [Campylobacter
           coli JV20]
 gi|304445390|gb|EFM38029.1| crossover junction ATP-dependent DNA helicase RuvB [Campylobacter
           coli JV20]
          Length = 336

 Score =  340 bits (872), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 162/309 (52%), Positives = 227/309 (73%), Gaps = 1/309 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP   + + GQ     NL VFI AAK R E LDH+LF GP GLGKTTLA +++ E+G N
Sbjct: 20  LRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMGAN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            ++T+ P+I K+GDLAA+LTNL + D+LFIDEIHRLS  +EE+LYPAMED++LD+++G G
Sbjct: 80  IKTTAAPMIEKSGDLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+A+++KI+L +FTLI ATTR G+L+NPL+DRFG+  RL FY+ E+L  I+Q+ A     
Sbjct: 140 PAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDEELAIILQKAALKLNK 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
           +  +EAA EIA RSR TPRIA RLL+RVRDFA+V   +TIT+E A  AL  L ++++GFD
Sbjct: 200 SCENEAALEIAKRSRSTPRIALRLLKRVRDFADVNDEETITKERAKEALNSLGVNELGFD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +DLRYL ++       P+G+ +I+A LSE  + IED+IEPY++  G+I+RT +GR+   
Sbjct: 260 AMDLRYLELLTEA-KRKPIGLSSIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIAST 318

Query: 322 IAWQHLGID 330
            ++  L ++
Sbjct: 319 KSFSVLKLN 327


>gi|88602183|ref|YP_502361.1| Holliday junction DNA helicase RuvB [Methanospirillum hungatei
           JF-1]
 gi|97190136|sp|Q2FPZ8|RUVB_METHJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|88187645|gb|ABD40642.1| Holliday junction DNA helicase subunit RuvB [Methanospirillum
           hungatei JF-1]
          Length = 337

 Score =  340 bits (872), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 170/314 (54%), Positives = 226/314 (71%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E+ D   +RP  L +F GQ      L V I +A+ R + LDH+LF GPPGLGKTTLA ++
Sbjct: 13  EEQDEPSVRPGLLADFIGQDSIKDALTVAITSARKRNKPLDHILFSGPPGLGKTTLAHII 72

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A+E+  +  +TSGPV+ + GDLAALLT L+DRD LFIDEIHRLS ++EEILYPAMED+ +
Sbjct: 73  AQEMNSHIETTSGPVLDRPGDLAALLTPLKDRDFLFIDEIHRLSPVIEEILYPAMEDYTI 132

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           DL++GEGPSAR++++ L RFTLI ATTR+GLL +P +DRFGI +RL+ Y+  +L  IV R
Sbjct: 133 DLLIGEGPSARTIQLPLERFTLIGATTRLGLLGSPFRDRFGIILRLDLYDPSELTVIVTR 192

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A + G+ +T E A EIA RSRGTPRIA RLL+R  D+A V    +I + IA+ AL  L 
Sbjct: 193 SAGILGIPITPEGAAEIAGRSRGTPRIANRLLKRAYDYAIVRGTGSIDQNIANTALFALG 252

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D+ G D LD R L +IA +F GGPVG++TIS  + E    IED+ EPY+I+ GF++RTP
Sbjct: 253 VDQKGLDILDRRILEVIANDFDGGPVGLKTISISVGEEPRTIEDVYEPYLIRIGFLKRTP 312

Query: 315 RGRLLMPIAWQHLG 328
           +GR++   A  HLG
Sbjct: 313 QGRMITSAARDHLG 326


>gi|293400499|ref|ZP_06644644.1| holliday junction DNA helicase RuvB [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305525|gb|EFE46769.1| holliday junction DNA helicase RuvB [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 335

 Score =  340 bits (872), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 169/323 (52%), Positives = 232/323 (71%), Gaps = 5/323 (1%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           + V +ED     LRP TL+E+ GQ +   NL VFI+AAK R EALDHVL  GPPGLGKTT
Sbjct: 10  QGVEEEDT----LRPSTLKEYIGQAQLKENLAVFIQAAKQRNEALDHVLLYGPPGLGKTT 65

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           L+ ++A E+G + ++TSGP I K+GDLAA+L+ LE  DVLFIDEIHRL   VEE+LYPAM
Sbjct: 66  LSYILANEMGGHIKTTSGPSIEKSGDLAAILSTLEAGDVLFIDEIHRLPKQVEEVLYPAM 125

Query: 130 EDFQLDLMVGEGPSA-RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           ED+ +D++VG+  S  RS++++L  FTL+ ATTR G LT PL+DRFGI  +L FY +++L
Sbjct: 126 EDYCIDIVVGKDSSTTRSIRLDLPPFTLVGATTRAGDLTAPLRDRFGIVSQLEFYSLDEL 185

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           + I+ R +++    + +EA  EIA+RSRGTPRIA RL RRVRDFA+V +   I + +A  
Sbjct: 186 QQIIWRTSRVMDTEIEEEAVLEIALRSRGTPRIANRLFRRVRDFAQVMNDGIIDKAVAAM 245

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL +L +D +G D +D +YL  I   F GGPVG+E +++ + E    +ED+ EPY++Q G
Sbjct: 246 ALDKLKVDHLGLDNVDHKYLKGIIERFKGGPVGLEALASSIGEEAMTLEDVYEPYLLQIG 305

Query: 309 FIQRTPRGRLLMPIAWQHLGIDI 331
           FI RTPRGR++   A++HLG D+
Sbjct: 306 FINRTPRGRIVTDKAYRHLGYDM 328


>gi|34763187|ref|ZP_00144153.1| Holliday junction DNA helicase ruvB [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|27887156|gb|EAA24261.1| Holliday junction DNA helicase ruvB [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
          Length = 338

 Score =  340 bits (872), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 159/306 (51%), Positives = 222/306 (72%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP++ +E+ GQ      + + I+AA+ R   +DH+L  GPPGLGKTTLA V+A E+  N
Sbjct: 20  LRPKSFDEYIGQENLKEKMSISIKAAQKRNMVVDHILLYGPPGLGKTTLAGVIANEMKAN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGP++ KAGDLAA+LT+LE+ D+LFIDEIHRL+  VEEILYPAMED +LD+++G+G
Sbjct: 80  LKITSGPILEKAGDLAAILTSLEENDILFIDEIHRLNSTVEEILYPAMEDGELDIIIGKG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSA+S++I L  FTLI ATTR GLL+ PL+DRFG+  ++ +Y   ++K+I+ RGAK+ G+
Sbjct: 140 PSAKSIRIELPPFTLIGATTRAGLLSAPLRDRFGVSHKMEYYNENEIKSIIIRGAKILGV 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + ++ A EI+ RSRGTPRIA RLL+RVRD+ E+    TI +  A  AL  L +D  G D
Sbjct: 200 KINEDGAIEISKRSRGTPRIANRLLKRVRDYCEIKGNGTIDKLSAKNALDMLGVDSNGLD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            LD   +  I  N+ GGPVGIET+S  L E R  +E++ EPY+++ GF++RT RGR++ P
Sbjct: 260 DLDRNIINSIIENYDGGPVGIETLSLLLGEDRRTLEEVYEPYLVKIGFLKRTNRGRIVTP 319

Query: 322 IAWQHL 327
            A+QH 
Sbjct: 320 KAYQHF 325


>gi|322515865|ref|ZP_08068807.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           vestibularis ATCC 49124]
 gi|322125652|gb|EFX96979.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           vestibularis ATCC 49124]
          Length = 333

 Score =  340 bits (872), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 163/309 (52%), Positives = 223/309 (72%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+  +E+ GQ +    LK+FIEAAK R EALDH L  GPPGLGKTT+A V+A E+GVN
Sbjct: 20  LRPQYFKEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANEMGVN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGP I KAGDL A+L +LE  D+LFIDEIHR+ + VEE+LY AMED+ +D+M+G G
Sbjct: 80  LKQTSGPAIEKAGDLVAILNDLEPGDILFIDEIHRMPMAVEEVLYSAMEDYYIDIMIGAG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            ++RSV ++L  FTL+ ATTR G+L+NPL+ RFGI   + +YE+ DL  IV+R +++  +
Sbjct: 140 ETSRSVHLDLPPFTLVGATTRAGMLSNPLRARFGINGHMEYYELPDLTEIVERTSEIFEM 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T EAA E+A RSRGTPRIA RLL+RVRD+A++     I  +IAD AL  L +D  G D
Sbjct: 200 TITPEAALELARRSRGTPRIANRLLKRVRDYAQIMGDGIIDDKIADKALTMLDVDHEGLD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GFI RT  GR+   
Sbjct: 260 YVDQKILRTMIEIYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRTGRVATV 319

Query: 322 IAWQHLGID 330
            A++H+G D
Sbjct: 320 KAYEHMGYD 328


>gi|228470154|ref|ZP_04055063.1| holliday junction DNA helicase RuvB [Porphyromonas uenonis 60-3]
 gi|228308292|gb|EEK17147.1| holliday junction DNA helicase RuvB [Porphyromonas uenonis 60-3]
          Length = 348

 Score =  340 bits (872), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 173/307 (56%), Positives = 216/307 (70%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP   + F GQ     NLKVF+EAA+ R EALDHVL  GPPGLGKTTL+ +++ ELGV 
Sbjct: 27  LRPSYFDSFRGQGHVVDNLKVFVEAARRRDEALDHVLLYGPPGLGKTTLSHIISHELGVG 86

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGPV+ KAGDLA LLT+LE RDVLFIDEIHRLS  VEE LY AMEDF++DLM+ +G
Sbjct: 87  MKITSGPVLEKAGDLAGLLTSLEPRDVLFIDEIHRLSHTVEEYLYSAMEDFRIDLMIDKG 146

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P ARS++I+L+ FTL+ ATTR GLLT PL+DRFGI + L +Y+++ L  IV R A++  +
Sbjct: 147 PGARSIQIDLNPFTLVGATTRSGLLTAPLRDRFGINLHLEYYDVDTLTDIVLRSARILEV 206

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
              +EAA  IA+RSRGTPRIA  LL+RVRDFA+V     I   I   AL  L IDK G D
Sbjct: 207 PCEEEAARGIALRSRGTPRIANALLKRVRDFAQVKGNGVIDSNITTVALEALHIDKHGLD 266

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             D + L  I   F GGPVG+ TI+  + E    IE++ EP++IQ+GFIQRT  GR    
Sbjct: 267 HTDHKLLKTIIDKFDGGPVGLSTIATAMGEDPGTIEEVYEPFLIQEGFIQRTRTGRQATR 326

Query: 322 IAWQHLG 328
           +A+ HLG
Sbjct: 327 LAYAHLG 333


>gi|169333982|ref|ZP_02861175.1| hypothetical protein ANASTE_00374 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258699|gb|EDS72665.1| hypothetical protein ANASTE_00374 [Anaerofustis stercorihominis DSM
           17244]
          Length = 347

 Score =  340 bits (872), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 165/308 (53%), Positives = 223/308 (72%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP TL E+ GQ      ++VFI AAK R EALDHVL  GPPGLGKTTL+ ++A ELGV+
Sbjct: 21  LRPSTLGEYIGQETVKERMRVFISAAKQRGEALDHVLLYGPPGLGKTTLSNIIANELGVS 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGP I K GDLAA+L+ L+  DVLFIDEIHRL+  +EE+LYPAMED+  D+++G+G
Sbjct: 81  IKVTSGPAIEKPGDLAAILSGLKKNDVLFIDEIHRLNRTIEEVLYPAMEDYAFDIVMGKG 140

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+A+SV+I ++ FTLI ATTR GLL++PL+DRFG+  +L  Y+IE+L  I++R + +  +
Sbjct: 141 PNAKSVRIPIAPFTLIGATTRTGLLSSPLRDRFGVLNKLEMYKIEELMEIIKRSSGILDI 200

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + DE A EIA+RSR TPRIA R L+RVRD+A+V ++  I  +IA  AL  L +D+ G D
Sbjct: 201 DIDDEGAKEIAIRSRQTPRIANRFLKRVRDYAQVKNSDMINGKIAVEALKLLDVDENGLD 260

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             D+  L  I   F GGPVG+ T+SA + E  D I D+ EPY++Q GFI RTPRGR+   
Sbjct: 261 SSDIGILDAIINKFDGGPVGLNTLSAIIGEEEDTILDVYEPYLLQLGFINRTPRGRVATK 320

Query: 322 IAWQHLGI 329
           +A+ +LG+
Sbjct: 321 LAYDYLGV 328


>gi|257899428|ref|ZP_05679081.1| holliday junction DNA helicase RuvB [Enterococcus faecium Com15]
 gi|293570774|ref|ZP_06681824.1| holliday junction DNA helicase RuvB [Enterococcus faecium E980]
 gi|257837340|gb|EEV62414.1| holliday junction DNA helicase RuvB [Enterococcus faecium Com15]
 gi|291609246|gb|EFF38518.1| holliday junction DNA helicase RuvB [Enterococcus faecium E980]
          Length = 333

 Score =  340 bits (872), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 169/330 (51%), Positives = 226/330 (68%), Gaps = 1/330 (0%)

Query: 2   MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M  E LLS    + +  +   LRP+ L ++ GQ +    L+++IEAA+ R E LDHVL  
Sbjct: 1   MTDEYLLSPETGENELSLEKSLRPQLLSQYIGQRKVKQELQIYIEAARNREEPLDHVLLY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTT+A V+A E+ VN R+TSGP I + GDL A+L  LE  DVLFIDEIHRL  +
Sbjct: 61  GPPGLGKTTMAMVIANEMTVNIRTTSGPAIERPGDLVAILNELEAGDVLFIDEIHRLPRV 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LY AMEDF +D+MVG+GP+A  V   L  FTLI ATTR G+L+ PL+DRFGI   +
Sbjct: 121 VEEMLYSAMEDFYVDIMVGQGPTAHPVHFPLPPFTLIGATTRAGMLSAPLRDRFGIISHM 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y+ ++L+ IV R + +    + +E A EIA RSRGTPRIA RLL+RVRDFA+V     
Sbjct: 181 EYYDEQELQEIVLRSSDIFQTEIIEEGALEIARRSRGTPRIANRLLKRVRDFAQVQGDGK 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I R IAD AL  L +D+ G D +D + L  +   +GGGPVG+ T+S  + E R+ +ED+ 
Sbjct: 241 IDRPIADQALTLLQVDQAGLDYVDQKLLRTMIELYGGGPVGLSTLSVNIGEERETVEDMY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           EPY+IQ+GF++RTPRGR+    A++H G D
Sbjct: 301 EPYLIQKGFLKRTPRGRMATAYAYEHFGYD 330


>gi|315023979|gb|EFT36981.1| Holliday junction DNA helicase RuvB [Riemerella anatipestifer
           RA-YM]
          Length = 340

 Score =  340 bits (872), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 166/308 (53%), Positives = 221/308 (71%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP++ ++F GQ     NL+VF+ AAK R  ALDH L  GPPGLGKTTLA ++A ELGV 
Sbjct: 23  IRPQSFKDFAGQRRTLDNLEVFVAAAKKRGSALDHTLLHGPPGLGKTTLAHIIANELGVG 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           F+ TSGPV+ K G LA LLTNLE+ DVLFIDEIHRLS +VEE LY AMED+++D+M+  G
Sbjct: 83  FKVTSGPVLDKPGSLAGLLTNLEENDVLFIDEIHRLSPVVEEYLYSAMEDYKIDIMLETG 142

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARSV+INL+ FTL+ ATTR G+LT P+  RFGI  RL +Y +E L  I++R A++ G+
Sbjct: 143 PNARSVQINLNPFTLVGATTRSGMLTKPMLARFGIQSRLEYYTVELLGMIIERSARVLGV 202

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + ++AA EIA RSRGTPRIA  LLRRVRDFAE+     I  +I   AL  L +D+ G D
Sbjct: 203 PIYEDAALEIARRSRGTPRIANALLRRVRDFAEIKGNGEIEIKITKFALDSLNVDEFGLD 262

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + + ++  NF G PVGI  ++  + E  + +E++ EP++IQ+GFI RTPRGR +  
Sbjct: 263 DMDNKIMRVMIENFKGKPVGISALATSIGENPETLEEVYEPFLIQEGFIIRTPRGREVTD 322

Query: 322 IAWQHLGI 329
            A+QHL I
Sbjct: 323 KAYQHLNI 330


>gi|160902803|ref|YP_001568384.1| Holliday junction DNA helicase B [Petrotoga mobilis SJ95]
 gi|160360447|gb|ABX32061.1| Holliday junction DNA helicase RuvB [Petrotoga mobilis SJ95]
          Length = 351

 Score =  340 bits (872), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 169/314 (53%), Positives = 222/314 (70%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           ED     LRP  L EF GQ      LKV IEAAK R EA+DHV+  GPPGLGKTTLA V+
Sbjct: 20  EDTGSKKLRPNYLNEFIGQDNIKKKLKVAIEAAKIRKEAMDHVVLAGPPGLGKTTLAYVI 79

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           + ELG N + TSGPVI KAGDLAA+LTNLE+ DVLFIDEIHRL+  VEEILY AMEDFQL
Sbjct: 80  SNELGANLQITSGPVIEKAGDLAAILTNLENGDVLFIDEIHRLNRTVEEILYSAMEDFQL 139

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D+++G+GPSARS++I+L  FTL+ ATTR+GL+  PL+ RFGI + ++FY  +DL  I++R
Sbjct: 140 DIVIGKGPSARSIRIDLQPFTLVGATTRLGLIAPPLRSRFGIILEVDFYSPKDLNLIIKR 199

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A +  + + ++A+  +A RSRGTPRIA RLLRRVRDF +V+    I  E  D  +  L 
Sbjct: 200 SADILNIKIKEDASLILAQRSRGTPRIANRLLRRVRDFVQVSGKNIIEAEDVDNTMKLLE 259

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D+ G D++D + L  I  N+ GGPVGI  +++ +    D+I ++ EP+++Q GFI RTP
Sbjct: 260 MDEDGLDKMDRKILKTIIENYEGGPVGINALASSIGIEPDSISEVYEPFLLQAGFIIRTP 319

Query: 315 RGRLLMPIAWQHLG 328
           RGR+    A+Q L 
Sbjct: 320 RGRVATEKAYQKLN 333


>gi|195977191|ref|YP_002122435.1| Holliday junction DNA helicase RuvB [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|238689839|sp|B4U5F8|RUVB_STREM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|195973896|gb|ACG61422.1| Holliday junction DNA helicase RuvB [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 333

 Score =  340 bits (871), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 167/307 (54%), Positives = 218/307 (71%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E+ GQ      L +FIEAAK R E+LDHVL  GPPGLGKTT+A V+A ELGV+
Sbjct: 20  LRPQYLREYIGQDRVKDQLMIFIEAAKRREESLDHVLLFGPPGLGKTTMAFVIANELGVH 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGP I KAGDL A+L +LE  DVLFIDEIHR+ + VEEILY AMEDF +D+M+G G
Sbjct: 80  LKQTSGPAIEKAGDLVAILNDLEPGDVLFIDEIHRMPMTVEEILYSAMEDFYIDIMIGAG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            ++RSV + L  FTLI ATTR G+L+NPL+ RFGI   + +Y+  DL  IV+R A +  +
Sbjct: 140 DTSRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYQTADLTEIVERTADIFDM 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  EAA E+A RSRGTPRIA RLL+RVRD+A++     IT +I D AL  L +D+ G D
Sbjct: 200 TIKHEAAYELARRSRGTPRIANRLLKRVRDYAQIMGDGMITTQITDKALTMLDVDQEGLD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   + GGPVG+ T+S  ++E RD +ED+ EPY+IQ+GFI RT  GR++  
Sbjct: 260 YVDQKILRTMIEVYQGGPVGLGTLSVNIAEERDTVEDMYEPYLIQKGFIMRTRTGRVVTE 319

Query: 322 IAWQHLG 328
            A+QHLG
Sbjct: 320 KAYQHLG 326


>gi|251781504|ref|YP_002995805.1| Holliday junction DNA helicase RuvB [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
 gi|242390132|dbj|BAH80591.1| Holliday junction DNA helicase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 338

 Score =  340 bits (871), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 167/313 (53%), Positives = 221/313 (70%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E+ GQ +    L +FIEAAK R E+LDHVL  GPPGLGKTT+A V+A ELGVN
Sbjct: 26  LRPQYLREYIGQDKVKEQLTIFIEAAKLRDESLDHVLLFGPPGLGKTTMAFVIANELGVN 85

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGP I KAGDL A+L +LE  DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G
Sbjct: 86  LKQTSGPAIEKAGDLVAILNDLEPGDVLFIDEIHRLPMAVEEVLYSAMEDFYIDIMIGAG 145

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            ++RSV ++L  FTLI ATTR G+L+NPL+ RFGI   + +Y+  DL  IV+R A +  +
Sbjct: 146 DTSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYQEADLTEIVERTADIFDM 205

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  EAA E+A RSRGTPRIA RLL+RVRD+A++     IT +I D AL  L +D+ G D
Sbjct: 206 EIVHEAAQELACRSRGTPRIANRLLKRVRDYAQIVGDGVITAQITDKALTMLDVDREGLD 265

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   + GGPVG+ T+S  ++E RD +ED+ EPY+IQ+GF+ RT  GR+   
Sbjct: 266 YVDQKILRTMIEMYQGGPVGLGTLSVNIAEERDTVEDMYEPYLIQKGFLMRTRTGRVATE 325

Query: 322 IAWQHLGIDIPHR 334
            A++HLG   P +
Sbjct: 326 KAYRHLGYPCPSK 338


>gi|110636796|ref|YP_677003.1| Holliday junction DNA helicase RuvB [Cytophaga hutchinsonii ATCC
           33406]
 gi|123354819|sp|Q11Y53|RUVB_CYTH3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|110279477|gb|ABG57663.1| Holliday junction DNA helicase [Cytophaga hutchinsonii ATCC 33406]
          Length = 342

 Score =  340 bits (871), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 168/306 (54%), Positives = 220/306 (71%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP + ++F GQ +   NLK+F+ AAK R E LDHVL  GPPGLGKTTL+ +++ EL  N
Sbjct: 24  LRPLSFDDFAGQDKILENLKIFVGAAKQRGEPLDHVLLHGPPGLGKTTLSNIISNELNSN 83

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGPV+ K GDLA LLTNL+  DVLFIDEIHRL+ +VEE LY AMED+++D+M+  G
Sbjct: 84  IKITSGPVLEKPGDLAGLLTNLQTNDVLFIDEIHRLNSVVEEYLYSAMEDYKIDIMLDSG 143

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            +ARS++I L+ FTLI ATTR GLLT+PL+ RFGI  RL +Y+ + L  IVQR + L   
Sbjct: 144 ANARSIQIGLNPFTLIGATTRAGLLTSPLRARFGINARLEYYDAKLLTRIVQRSSDLLNT 203

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + + AA EIA RSRGTPRIA  LLRR RDFA++    TIT EIA  AL  L +D  G D
Sbjct: 204 PILETAAFEIARRSRGTPRIANNLLRRTRDFAQIKGDGTITLEIARIALQALNVDHNGLD 263

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D R LT I   F GGPVG+ TI+  +SE  + IE++ EP++IQ+G+++RT RGR + P
Sbjct: 264 DMDNRILTTIIDKFKGGPVGLSTIATAVSEEAETIEEVYEPFLIQEGYLKRTSRGREVTP 323

Query: 322 IAWQHL 327
           +A++HL
Sbjct: 324 LAYKHL 329


>gi|148994600|ref|ZP_01823742.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           SP9-BS68]
 gi|168489735|ref|ZP_02713934.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           SP195]
 gi|147927130|gb|EDK78168.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           SP9-BS68]
 gi|183571836|gb|EDT92364.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           SP195]
          Length = 332

 Score =  340 bits (871), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 169/313 (53%), Positives = 218/313 (69%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E+ GQ +    L++FIEAAK R EALDHVL  GPPGLGKTT+A V+A ELGVN
Sbjct: 20  LRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANELGVN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGPVI KAGDL A+L  LE  DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G
Sbjct: 80  LKQTSGPVIEKAGDLVAILNELEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
             +RSV + L  FTLI ATTR G+L+NPL+ RFGI   + +Y   DL  IV+R A +  +
Sbjct: 140 EGSRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYAHADLTEIVERTADIFEM 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T EAA E+A+RSRGTPRIA RLL+RVRDFA++     I   I D AL  L +D  G D
Sbjct: 200 EITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGNGVIDDIITDKALTMLDVDHEGLD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   + GGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GFI RT  GR+   
Sbjct: 260 YVDQKILRTMIEMYSGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRSGRVATA 319

Query: 322 IAWQHLGIDIPHR 334
            A++HLG +   +
Sbjct: 320 KAYEHLGYEYSEK 332


>gi|304436497|ref|ZP_07396471.1| crossover junction ATP-dependent DNA helicase RuvB [Selenomonas sp.
           oral taxon 149 str. 67H29BP]
 gi|304370543|gb|EFM24194.1| crossover junction ATP-dependent DNA helicase RuvB [Selenomonas sp.
           oral taxon 149 str. 67H29BP]
          Length = 345

 Score =  340 bits (871), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 170/332 (51%), Positives = 231/332 (69%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M + E ++S      D     LRPR L E+ GQ    SNL  FI+AA +R EALDHVL  
Sbjct: 4   MGEDEEIISYEEQSTDGWQYSLRPRRLSEYIGQDRVKSNLSKFIQAALSRGEALDHVLLC 63

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A E+G NFR TS P I + GDLA+LLTNL++ DVLFIDEIHRLS  
Sbjct: 64  GPPGLGKTTLAAIIANEMGANFRQTSAPAIERQGDLASLLTNLQEHDVLFIDEIHRLSHH 123

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILY AMED  +D+++G+GPSARS++++L+ FTL+ ATT+ G L+ PL+DRFGI  RL
Sbjct: 124 VEEILYSAMEDHAIDIIIGKGPSARSIRLDLAPFTLVGATTKTGSLSAPLRDRFGIQARL 183

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y  + L  I++R A++  + +  + A EIA RSRGTPR+A R+L+RVRD A+VA  + 
Sbjct: 184 EYYTTDALLLIIERTAEILSVHIERDGALEIARRSRGTPRVANRILKRVRDIAQVAGEEI 243

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I+R +   AL  L +D+ G +  D   L ++ + F GGPVG++T++A LSE  + IED+ 
Sbjct: 244 ISRSVTIDALDALEVDECGLENKDRYMLEVMIQKFSGGPVGLKTLAAALSEMTETIEDVY 303

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EPY+IQ GFI RT RGR++    ++H+G   P
Sbjct: 304 EPYLIQLGFIARTARGRVVTQGGYEHIGAPYP 335


>gi|241895533|ref|ZP_04782829.1| Holliday junction DNA helicase B [Weissella paramesenteroides ATCC
           33313]
 gi|241871111|gb|EER74862.1| Holliday junction DNA helicase B [Weissella paramesenteroides ATCC
           33313]
          Length = 336

 Score =  340 bits (871), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 169/313 (53%), Positives = 219/313 (69%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP TL+++ GQ +    L V+IEAAK R+E LDH+L  GPPGLGKTTLA VVA E+GV 
Sbjct: 22  LRPSTLQQYIGQEDLKQRLHVYIEAAKQRSEPLDHILLYGPPGLGKTTLAMVVAHEMGVG 81

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R+TSGP I K+GDL ALL  L   DVLFIDEIHRL   VEE+LY AMEDF +D++ GEG
Sbjct: 82  LRTTSGPAIEKSGDLLALLNELAPGDVLFIDEIHRLPKQVEEMLYSAMEDFYVDIIAGEG 141

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+A  +   L  FTL+ ATTR G+L+ PL+DRFGI   + +Y   +L  I+QR A +  +
Sbjct: 142 PTAHPIHFPLPPFTLVGATTRAGMLSQPLRDRFGIVEHMAYYTPGELSKIIQRSADIFNI 201

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            V DE A E+A RSRGTPRIA RLLRRVRDF  V   KTIT E+ + +L  L ID MG D
Sbjct: 202 EVADEGAYELARRSRGTPRIANRLLRRVRDFTTVKGLKTITDEMVNFSLALLQIDGMGLD 261

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           ++D + L  + + + GGPVG+ TI+A + E  D IE + EPY++Q GF+QRTPRGR++  
Sbjct: 262 EVDHKILETMIKFYQGGPVGVGTIAANIGEEVDTIESVYEPYLLQIGFLQRTPRGRVVTL 321

Query: 322 IAWQHLGIDIPHR 334
            A++HL + +P +
Sbjct: 322 AAYEHLHLPLPDK 334


>gi|183603173|ref|ZP_02710483.2| holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           CDC1087-00]
 gi|183603560|ref|ZP_02718099.2| holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           CDC3059-06]
 gi|307126476|ref|YP_003878507.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           670-6B]
 gi|183570868|gb|EDT91396.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           CDC1087-00]
 gi|183576055|gb|EDT96583.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           CDC3059-06]
 gi|301793527|emb|CBW35902.1| Holliday junction DNA helicase, subunit B [Streptococcus pneumoniae
           INV104]
 gi|301799403|emb|CBW31939.1| Holliday junction DNA helicase, subunit B [Streptococcus pneumoniae
           OXC141]
 gi|301801200|emb|CBW33874.1| Holliday junction DNA helicase, subunit B [Streptococcus pneumoniae
           INV200]
 gi|306483538|gb|ADM90407.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           670-6B]
 gi|327390676|gb|EGE89016.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           GA04375]
 gi|332075924|gb|EGI86391.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           GA17570]
 gi|332076706|gb|EGI87168.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           GA17545]
 gi|332203425|gb|EGJ17492.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           GA47368]
          Length = 323

 Score =  340 bits (871), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 169/313 (53%), Positives = 218/313 (69%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E+ GQ +    L++FIEAAK R EALDHVL  GPPGLGKTT+A V+A ELGVN
Sbjct: 11  LRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANELGVN 70

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGPVI KAGDL A+L  LE  DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G
Sbjct: 71  LKQTSGPVIEKAGDLVAILNELEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAG 130

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
             +RSV + L  FTLI ATTR G+L+NPL+ RFGI   + +Y   DL  IV+R A +  +
Sbjct: 131 EGSRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYAHADLTEIVERTADIFEM 190

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T EAA E+A+RSRGTPRIA RLL+RVRDFA++     I   I D AL  L +D  G D
Sbjct: 191 EITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGNGVIDDIITDKALTMLDVDHEGLD 250

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   + GGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GFI RT  GR+   
Sbjct: 251 YVDQKILRTMIEMYSGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRSGRVATA 310

Query: 322 IAWQHLGIDIPHR 334
            A++HLG +   +
Sbjct: 311 KAYEHLGYEYSEK 323


>gi|184154992|ref|YP_001843332.1| Holliday junction DNA helicase RuvB [Lactobacillus fermentum IFO
           3956]
 gi|227514530|ref|ZP_03944579.1| crossover junction endoribonuclease subunit B [Lactobacillus
           fermentum ATCC 14931]
 gi|183226336|dbj|BAG26852.1| holliday junction DNA helicase RuvB [Lactobacillus fermentum IFO
           3956]
 gi|227087087|gb|EEI22399.1| crossover junction endoribonuclease subunit B [Lactobacillus
           fermentum ATCC 14931]
          Length = 339

 Score =  340 bits (871), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 173/329 (52%), Positives = 226/329 (68%), Gaps = 2/329 (0%)

Query: 3   DREGLLSRNVS--QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           D + +LS  V+  QE  D   LRP+TL  + GQ      L V+I+AAK+R EALDHVL  
Sbjct: 4   DFDDVLSNEVTDDQEGRDEVSLRPQTLATYIGQARIKHELAVYIQAAKSRGEALDHVLLY 63

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA V+A E+ V  ++TSGP I K GDL ALL +L+  DVLFIDEIHRL  +
Sbjct: 64  GPPGLGKTTLAMVIANEMQVAIKTTSGPAIEKPGDLVALLNDLKPGDVLFIDEIHRLPKV 123

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LY AMEDF +D++VGEGP+A  V   L  FTLI ATTR GLL  PL+DRFGI  R+
Sbjct: 124 VEEMLYSAMEDFYIDIVVGEGPTAHPVHFPLPPFTLIGATTRAGLLAAPLRDRFGIVARM 183

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           ++Y   +L  I+ R A +    + ++ A E+A+RSRGTPRIA RLL+RVRDFA+V     
Sbjct: 184 DYYTTTELSQIIDRSATIFNTKIQEDGAHELALRSRGTPRIANRLLKRVRDFAQVGGQAA 243

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I     D AL  LA+D  G D++D + LT +  ++ GGPVGI TI+A + E  + IE++ 
Sbjct: 244 IDPATVDRALDLLAVDDQGLDEIDRKLLTTMIEHYHGGPVGIRTIAANIGEEVNTIEEMY 303

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           EPY++Q GF+ RTPRGR++ P A++HL I
Sbjct: 304 EPYLLQIGFLMRTPRGRVVTPAAYEHLKI 332


>gi|15805623|ref|NP_294319.1| Holliday junction DNA helicase RuvB [Deinococcus radiodurans R1]
 gi|7388247|sp|Q9X719|RUVB_DEIRA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|6458295|gb|AAF10176.1|AE001918_1 Holliday junction DNA helicase [Deinococcus radiodurans R1]
          Length = 333

 Score =  340 bits (871), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 171/309 (55%), Positives = 223/309 (72%), Gaps = 1/309 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+TL E+ GQ +    L V+++AA+ R EALDH L  GPPGLGKTTLA ++A ELGVN
Sbjct: 11  LRPKTLTEYVGQEKLKDKLGVYLQAARGRREALDHTLLFGPPGLGKTTLAHIIAYELGVN 70

Query: 82  FRSTSGPVIAKAGDLAALLTN-LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
            R TSGP I K GDLAA+LTN LE+ DVLFIDEIHRL  + EE LYPAMEDF+LD+++G+
Sbjct: 71  IRVTSGPAIEKPGDLAAILTNSLEEGDVLFIDEIHRLGRVAEEHLYPAMEDFKLDIVLGQ 130

Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
           GP+AR++++ L RFTL+ ATTR GL+T P++ RFGI   L +Y  E++ T + R A+L G
Sbjct: 131 GPAARTIELPLPRFTLVGATTRPGLITAPMRSRFGIIEHLEYYTAEEIATNLLRDARLLG 190

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGF 260
             + +EA  EI  RSRGT RIA RLLRRVRD+A+VA   TI  E A +AL +L +D  G 
Sbjct: 191 FGLDEEAGLEIGARSRGTMRIAKRLLRRVRDYADVAGETTIGLERAQSALDKLGLDSAGL 250

Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320
           D  D +YL  +   F GGPVG++T++  +SE    +ED+ EPY+IQ GFI+RTPRGR+  
Sbjct: 251 DDRDKKYLETLIHRFAGGPVGVDTLATAISEDALTLEDVYEPYLIQLGFIKRTPRGRVAT 310

Query: 321 PIAWQHLGI 329
             A+ HLG+
Sbjct: 311 AHAYDHLGL 319


>gi|314936246|ref|ZP_07843593.1| holliday junction DNA helicase RuvB [Staphylococcus hominis subsp.
           hominis C80]
 gi|313654865|gb|EFS18610.1| holliday junction DNA helicase RuvB [Staphylococcus hominis subsp.
           hominis C80]
          Length = 331

 Score =  340 bits (871), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 165/328 (50%), Positives = 230/328 (70%), Gaps = 3/328 (0%)

Query: 1   MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M DR  ++ +++  E++     LRP  L+++ GQ    +NL++FI+AAK R E LDHVL 
Sbjct: 1   MDDR--MVDQSLHNEESSFEFSLRPTKLKQYIGQSSIKNNLEIFIKAAKLRDEPLDHVLL 58

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTL+ ++A E+ VN R+ SGP + + GDLAA+L+ L+  DVLFIDEIHRLS 
Sbjct: 59  FGPPGLGKTTLSNIIANEMEVNIRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSS 118

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LY AMEDF LD+++G+G  ARS++I+L  FTL+ ATTR G LT PL+DRFG+ +R
Sbjct: 119 VVEEVLYSAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATTRAGSLTGPLRDRFGVHLR 178

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y   DLK I+ R A++ G  + DE+A E+A RSRGTPR+A RLL+RVRDF +V   +
Sbjct: 179 LEYYSESDLKEIIIRTAEVLGTKIDDESAVELAKRSRGTPRVANRLLKRVRDFQQVNEDE 238

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  E    AL  L +D  G D +D + +  I   + GGPVG++T++  + E R  IED+
Sbjct: 239 QIYIETTKQALNLLQVDDEGLDYIDHKMMNCIINQYNGGPVGLDTLAVSIGEERITIEDV 298

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHL 327
            EP++IQ+GFI+RTPRGR   P A++H 
Sbjct: 299 YEPFLIQKGFIERTPRGRKATPFAYEHF 326


>gi|237744244|ref|ZP_04574725.1| holliday junction DNA helicase ruvB [Fusobacterium sp. 7_1]
 gi|256027908|ref|ZP_05441742.1| Holliday junction DNA helicase RuvB [Fusobacterium sp. D11]
 gi|260494172|ref|ZP_05814303.1| Holliday junction DNA helicase RuvB [Fusobacterium sp. 3_1_33]
 gi|289765857|ref|ZP_06525235.1| holliday junction DNA helicase ruvB [Fusobacterium sp. D11]
 gi|229431473|gb|EEO41685.1| holliday junction DNA helicase ruvB [Fusobacterium sp. 7_1]
 gi|260198318|gb|EEW95834.1| Holliday junction DNA helicase RuvB [Fusobacterium sp. 3_1_33]
 gi|289717412|gb|EFD81424.1| holliday junction DNA helicase ruvB [Fusobacterium sp. D11]
          Length = 332

 Score =  340 bits (871), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 159/306 (51%), Positives = 223/306 (72%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP++ +E+ GQ      + + I+AA+ R   +DH+L  GPPGLGKTTLA V+A E+  N
Sbjct: 20  LRPKSFDEYIGQENLKEKMSISIKAAQKRNMVVDHILLYGPPGLGKTTLAGVIANEMKAN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGP++ KAGDLAA+LT+LE+ D+LFIDEIHRL+  VEEILYPAMED +LD+++G+G
Sbjct: 80  LKITSGPILEKAGDLAAILTSLEENDILFIDEIHRLNSTVEEILYPAMEDGELDIIIGKG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSA+S++I L  FTLI ATTR GLL+ PL+DRFG+  ++ +Y   ++K+I+ RGAK+ G+
Sbjct: 140 PSAKSIRIELPPFTLIGATTRAGLLSAPLRDRFGVSHKMEYYNENEIKSIIIRGAKILGV 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + ++ A EI+ RSRGTPRIA RLL+RVRD+ E+    TI +  A +AL  L +D  G D
Sbjct: 200 KIDEDGAIEISKRSRGTPRIANRLLKRVRDYCEIKGNGTIDKLSAKSALDMLGVDSNGLD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            LD   +  I  N+ GGPVGIET+S  L E R  +E++ EPY+++ GF++RT RGR++ P
Sbjct: 260 DLDRNIVNSIIENYDGGPVGIETLSLLLGEDRRTLEEVYEPYLVKIGFLKRTNRGRVVTP 319

Query: 322 IAWQHL 327
            A+QH 
Sbjct: 320 KAYQHF 325


>gi|255531791|ref|YP_003092163.1| Holliday junction DNA helicase RuvB [Pedobacter heparinus DSM 2366]
 gi|255344775|gb|ACU04101.1| Holliday junction DNA helicase RuvB [Pedobacter heparinus DSM 2366]
          Length = 340

 Score =  340 bits (871), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 173/325 (53%), Positives = 231/325 (71%), Gaps = 1/325 (0%)

Query: 9   SRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           S ++S  + DI  +LRP+  ++FTGQ +   NLK+F++AAK R E LDHVL  GPPGLGK
Sbjct: 9   SESLSPVERDIEKVLRPQAFDDFTGQEKVMENLKIFVKAAKLRGEPLDHVLLHGPPGLGK 68

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127
           TTL+ ++A E+GV  + TSGPV+ K GDLA LLT L++ D+LFIDEIHRLS +VEE LY 
Sbjct: 69  TTLSLIIANEMGVGIKVTSGPVLDKPGDLAGLLTGLDEGDILFIDEIHRLSPLVEEYLYS 128

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           AMEDF++D+M+  GP+ARSV+I+L+ FTL+ ATTR GLLT PL+ RFGI  RL +Y+ + 
Sbjct: 129 AMEDFKIDIMLESGPNARSVQISLNPFTLVGATTRSGLLTAPLRARFGINSRLAYYDAKL 188

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           L TIV R +++    +TDE A EIA RSRGTPRIA  LLRR RDFA++     I  EIA 
Sbjct: 189 LTTIVLRSSEILKTPITDEGAYEIARRSRGTPRIANALLRRTRDFAQIKGTGEIDTEIAR 248

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
            AL  L +D+ G D++D + LT I   F GGPVG++TI+  + E    IE++ EP++IQ+
Sbjct: 249 YALKALNVDEHGLDEMDNKILTTIIDKFKGGPVGLKTIATAVGEDEGTIEEVYEPFLIQE 308

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIP 332
           GF+ RT RGR     A++HL  + P
Sbjct: 309 GFLMRTSRGREATEAAYKHLQRNFP 333


>gi|257467707|ref|ZP_05631803.1| Holliday junction DNA helicase RuvB [Fusobacterium ulcerans ATCC
           49185]
 gi|317062000|ref|ZP_07926485.1| holliday junction DNA helicase B [Fusobacterium ulcerans ATCC
           49185]
 gi|313687676|gb|EFS24511.1| holliday junction DNA helicase B [Fusobacterium ulcerans ATCC
           49185]
          Length = 340

 Score =  339 bits (870), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 165/319 (51%), Positives = 228/319 (71%), Gaps = 3/319 (0%)

Query: 12  VSQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
            S+ + DI +   LRPR  +E+ GQV     + + IEAAK R  ++DH+L  GPPGLGKT
Sbjct: 7   TSEMENDIEIQRTLRPRCFKEYIGQVSLKEKMSISIEAAKKRGGSIDHILLYGPPGLGKT 66

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           TLA V+A E+G N + TSGPV+ +AGDLAA+LT+LE+ D+LFIDEIHRL+  VEEILYPA
Sbjct: 67  TLAGVIATEMGANLKITSGPVLERAGDLAAILTSLEENDILFIDEIHRLNNTVEEILYPA 126

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           MED +LD+++G+GPSARS++I L  FTLI ATTR GLL++PL+DRFG+  R+ +Y  E++
Sbjct: 127 MEDKELDIIIGKGPSARSIRIELPSFTLIGATTRAGLLSSPLRDRFGVTHRMEYYSEEEI 186

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             I+ RG  + G+ +  + A E+A RSRGTPRIA RLL+RVRDF E+     I R+I+  
Sbjct: 187 TDIILRGGNILGVKIELDGAKELASRSRGTPRIANRLLKRVRDFCEIRGNGIIDRDISLK 246

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL  L ID  G D LD   +  I  N+GGGPVGI+T+S  L E +  +E++ EPY+++ G
Sbjct: 247 ALDILGIDSAGLDDLDRDIVNAIIDNYGGGPVGIDTLSLMLGEDKRTLEEVYEPYLVKIG 306

Query: 309 FIQRTPRGRLLMPIAWQHL 327
           +++RT RGR++   A++H 
Sbjct: 307 YLKRTNRGRMVTEKAYEHF 325


>gi|163790794|ref|ZP_02185220.1| Holliday junction DNA helicase RuvB [Carnobacterium sp. AT7]
 gi|159873974|gb|EDP68052.1| Holliday junction DNA helicase RuvB [Carnobacterium sp. AT7]
          Length = 337

 Score =  339 bits (870), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 171/335 (51%), Positives = 227/335 (67%), Gaps = 3/335 (0%)

Query: 2   MDREGLLSRNVSQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           MD E  +    S    +ISL   LRP  + E+ GQ +    L ++IEAAK R EALDHVL
Sbjct: 1   MDPEERIISGDSSTTEEISLEKSLRPHYMAEYIGQEKVKRELAIYIEAAKNREEALDHVL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTT+A V++ E+ V  R+TSGP I KAGDL ALL  LE  DVLFIDEIHR+ 
Sbjct: 61  LYGPPGLGKTTMAMVISNEMNVAIRTTSGPAIEKAGDLVALLNELEAGDVLFIDEIHRMP 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            +VEE+LY AMED+ +D++VG+GP+A  V   L  FTL+ ATTR GLL+ PL+DRFGI  
Sbjct: 121 RLVEEMLYSAMEDYFVDIIVGQGPTAHPVHFPLPPFTLVGATTRAGLLSAPLRDRFGIVS 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
            + +Y +E+L  IV R A +    + +  A EIA RSRGTPR+A RLL+RVRD+A+V   
Sbjct: 181 HMEYYTVEELSDIVLRSADIFNTEIIESGAIEIARRSRGTPRVANRLLKRVRDYAQVQSN 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             I +EIAD AL  L ID+ G D +D + L  +  N+ GGPVG+ TI+A + E  + IED
Sbjct: 241 GVIKKEIADEALAMLRIDQEGLDFVDQKLLKTMIENYNGGPVGLSTIAANIGEEIETIED 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           ++EP+++Q GF+QRTPRGR++  + + HLG  I +
Sbjct: 301 MVEPFLLQAGFLQRTPRGRIVTHLGYTHLGYPITY 335


>gi|313683108|ref|YP_004060846.1| holliday junction DNA helicase subunit ruvb [Sulfuricurvum kujiense
           DSM 16994]
 gi|313155968|gb|ADR34646.1| Holliday junction DNA helicase subunit RuvB [Sulfuricurvum kujiense
           DSM 16994]
          Length = 335

 Score =  339 bits (870), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 169/321 (52%), Positives = 231/321 (71%), Gaps = 1/321 (0%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           + E+   + LRP    ++ GQ +   NL VFIEA+  R EALDHVLF GPPGLGKTTLA 
Sbjct: 11  NAEEVTETSLRPSAWNDYIGQEQIKKNLGVFIEASSKRGEALDHVLFYGPPGLGKTTLAL 70

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++A E+G N + T+ P+I K+GDLAA+LTNLE+ D+LFIDEIHRLS  VEEILYP+MEDF
Sbjct: 71  IIANEMGSNIKVTAAPMIEKSGDLAAILTNLEEGDILFIDEIHRLSPAVEEILYPSMEDF 130

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           +LD+++G GP+A++VKI+L RFTLI ATTR G+L+NPL+DRFG+  R+ FY  ++L +I+
Sbjct: 131 RLDIIIGSGPAAQTVKIDLPRFTLIGATTRAGMLSNPLRDRFGMNFRMQFYTPDELCSII 190

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            + A   G  +  +AA EIA RSRGTPRIA RLL+RVRDFA+VA+  TI  E +  AL +
Sbjct: 191 TQAAIKLGKNIDKDAANEIAKRSRGTPRIALRLLKRVRDFADVANESTILHERSRYALDQ 250

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L I+  GFD++D+R L ++     G  +G+ TI+A LSE    IED++EPY++  G+++R
Sbjct: 251 LGINANGFDEMDIRLLKLLMEA-KGRAMGLSTIAAALSEDEGTIEDVLEPYLLANGYLER 309

Query: 313 TPRGRLLMPIAWQHLGIDIPH 333
           T RGR+  P  ++ L    P 
Sbjct: 310 TARGRVATPKTYELLKFGTPQ 330


>gi|77411220|ref|ZP_00787571.1| Holliday junction DNA helicase RuvB [Streptococcus agalactiae
           CJB111]
 gi|77413884|ref|ZP_00790061.1| Holliday junction DNA helicase RuvB [Streptococcus agalactiae 515]
 gi|77160067|gb|EAO71201.1| Holliday junction DNA helicase RuvB [Streptococcus agalactiae 515]
 gi|77162743|gb|EAO73703.1| Holliday junction DNA helicase RuvB [Streptococcus agalactiae
           CJB111]
          Length = 318

 Score =  339 bits (870), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 166/307 (54%), Positives = 218/307 (71%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E+ GQ +    LK+FIEAAK R E+LDHVL  GPPGLGKTT+A V+A ELGVN
Sbjct: 6   LRPQYLREYIGQDKVKDQLKIFIEAAKLRDESLDHVLLFGPPGLGKTTMAFVIANELGVN 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGP I K+GDL A+L +LE  DVLFIDEIHR+ + VEE+LY AMEDF +D+M+G G
Sbjct: 66  LKQTSGPAIEKSGDLVAILNDLEPGDVLFIDEIHRMPMAVEEVLYSAMEDFYIDIMIGAG 125

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            ++RSV ++L  FTLI ATTR G+L+NPL+ RFGI   + +YE  DL  I++R A +  +
Sbjct: 126 ETSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYEENDLTEIIERTADIFEM 185

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T EAA E+A RSRGTPRIA RLL+RVRD+A++     I   I D AL  L +D  G D
Sbjct: 186 KITYEAASELARRSRGTPRIANRLLKRVRDYAQIMGDGLIDDNITDKALTMLDVDHEGLD 245

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   + GGPVG+ T+S  ++E RD +ED+ EPY+IQ+GFI RT  GR+   
Sbjct: 246 YVDQKILRTMIEMYNGGPVGLGTLSVNIAEERDTVEDMYEPYLIQKGFIMRTRTGRVATD 305

Query: 322 IAWQHLG 328
            A++HLG
Sbjct: 306 KAYEHLG 312


>gi|77409490|ref|ZP_00786180.1| Holliday junction DNA helicase RuvB [Streptococcus agalactiae COH1]
 gi|77171893|gb|EAO75072.1| Holliday junction DNA helicase RuvB [Streptococcus agalactiae COH1]
          Length = 318

 Score =  339 bits (870), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 166/307 (54%), Positives = 218/307 (71%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E+ GQ +    LK+FIEAAK R E+LDHVL  GPPGLGKTT+A V+A ELGVN
Sbjct: 6   LRPQYLREYIGQDKVKDQLKIFIEAAKLRDESLDHVLLFGPPGLGKTTMAFVIANELGVN 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGP I K+GDL A+L +LE  DVLFIDEIHR+ + VEE+LY AMEDF +D+M+G G
Sbjct: 66  LKQTSGPAIEKSGDLVAILNDLEPGDVLFIDEIHRMPMAVEEVLYSAMEDFYIDIMIGAG 125

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            ++RSV ++L  FTLI ATTR G+L+NPL+ RFGI   + +YE  DL  I++R A +  +
Sbjct: 126 ETSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYEENDLTEIIERTADIFEM 185

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T EAA E+A RSRGTPRIA RLL+RVRD+A++     I   I D AL  L +D  G D
Sbjct: 186 KITYEAASELARRSRGTPRIANRLLKRVRDYAQIMGDGLIDDNITDKALTMLDVDHEGLD 245

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   + GGPVG+ T+S  ++E RD +ED+ EPY+IQ+GFI RT  GR+   
Sbjct: 246 YVDQKILRTMIEMYNGGPVGLGTLSVNITEERDTVEDMYEPYLIQKGFIMRTRTGRVATD 305

Query: 322 IAWQHLG 328
            A++HLG
Sbjct: 306 KAYEHLG 312


>gi|320161389|ref|YP_004174613.1| Holliday junction ATP-dependent DNA helicase RuvB [Anaerolinea
           thermophila UNI-1]
 gi|319995242|dbj|BAJ64013.1| Holliday junction ATP-dependent DNA helicase RuvB [Anaerolinea
           thermophila UNI-1]
          Length = 344

 Score =  339 bits (870), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 165/312 (52%), Positives = 225/312 (72%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP  L++F GQ +   NL + I AA+ R E L+HVLF GPPGLGKTTLA V+A E+GVN
Sbjct: 23  LRPVRLKDFIGQDQIRENLSILITAARQRNEPLEHVLFYGPPGLGKTTLAHVLANEMGVN 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + T+GP I KAGDLAA+LTNL+  D+LFIDEIHRL   +EE+LYPAMEDF LD+M+G+G
Sbjct: 83  IKITAGPAIEKAGDLAAILTNLKGGDILFIDEIHRLGKAIEEVLYPAMEDFALDIMIGKG 142

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+++ L RFT+I ATTR+ L++ PL+ RFG   RL++Y++  ++ I++R A    +
Sbjct: 143 PAARSIRLKLPRFTVIGATTRLALISAPLRARFGAVYRLDYYDVNAIEAILKRAASRLQM 202

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            V  E   EIA R+RGTPR+A RLLRRVRDFA+V H   +T+ +A  AL  L +D +G D
Sbjct: 203 TVEPEGFREIAHRARGTPRVALRLLRRVRDFAQVRHQGLVTQAVAAEALNLLNVDPLGLD 262

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           ++D R L+ I   + GGPVG+ TI+A + E  D I D++EPY++Q GF+ RTP+GR+   
Sbjct: 263 EVDRRVLSTIILKYNGGPVGLNTIAASIGEEPDTIMDVVEPYLLQLGFLDRTPQGRVATQ 322

Query: 322 IAWQHLGIDIPH 333
            A++HL I  P 
Sbjct: 323 RAYEHLSIPYPQ 334


>gi|323126299|gb|ADX23596.1| Holliday junction DNA helicase RuvB [Streptococcus dysgalactiae
           subsp. equisimilis ATCC 12394]
          Length = 332

 Score =  339 bits (870), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 166/313 (53%), Positives = 221/313 (70%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E+ GQ +    L +FIEAAK R E+LDHV+  GPPGLGKTT+A V+A ELGVN
Sbjct: 20  LRPQYLREYIGQDKVKEQLTIFIEAAKLRDESLDHVMLFGPPGLGKTTMAFVIANELGVN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGP I KAGDL A+L +LE  DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G
Sbjct: 80  LKQTSGPAIEKAGDLVAILNDLEPGDVLFIDEIHRLPMAVEEVLYSAMEDFYIDIMIGAG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            ++RSV ++L  FTLI ATTR G+L+NPL+ RFGI   + +Y+  DL  IV+R A +  +
Sbjct: 140 DTSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYQEADLTEIVERTADIFDM 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  EAA E+A RSRGTPRIA RLL+RVRD+A++     IT +I D AL  L +D+ G D
Sbjct: 200 EIVHEAAQELACRSRGTPRIANRLLKRVRDYAQIVGDGVITAQITDKALTMLDVDREGLD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   + GGPVG+ T+S  ++E RD +ED+ EPY+IQ+GF+ RT  GR+   
Sbjct: 260 YVDQKILRTMIEMYQGGPVGLGTLSVNIAEERDTVEDMYEPYLIQKGFLMRTRTGRVATE 319

Query: 322 IAWQHLGIDIPHR 334
            A++HLG   P +
Sbjct: 320 KAYRHLGYPYPSK 332


>gi|297566961|ref|YP_003685933.1| Holliday junction DNA helicase RuvB [Meiothermus silvanus DSM 9946]
 gi|296851410|gb|ADH64425.1| Holliday junction DNA helicase RuvB [Meiothermus silvanus DSM 9946]
          Length = 326

 Score =  339 bits (870), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 174/312 (55%), Positives = 226/312 (72%), Gaps = 1/312 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ LE++ GQ      L V+++AAK R E LDH+L  GPPGLGKTTLA V+A ELGVN
Sbjct: 7   LRPKRLEDYVGQRRLKEKLAVYLQAAKNRGEPLDHMLLFGPPGLGKTTLAHVIANELGVN 66

Query: 82  FRSTSGPVIAKAGDLAALLTN-LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
            R TSGP I K GDLAA++TN +E+ D+LFIDEIHRLS   EE LYPAMEDF++D+++G+
Sbjct: 67  IRVTSGPAIEKPGDLAAIVTNSIEEGDILFIDEIHRLSRAAEEHLYPAMEDFKIDIVIGQ 126

Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
           GP+AR+++++L RFTLI ATTR GL++ PL+ RFGI   L FY  E+L   V R A L G
Sbjct: 127 GPAARTLRLDLPRFTLIGATTRPGLISGPLRSRFGIIEHLEFYTEEELAQGVMRDAALIG 186

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGF 260
           LA+T+EAA EI  RSRGT RIA RL RRVRD+AEVA   T+T E A  AL  L +D MG 
Sbjct: 187 LAITEEAAHEIGRRSRGTMRIAKRLFRRVRDYAEVAGEDTVTLERAREALDALGLDSMGL 246

Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320
           ++ D   L  + + FGGGPVG++T++  LSE    +E++ EP++IQ GF++RTPRGR+  
Sbjct: 247 ERRDRVILETLLQRFGGGPVGLDTLATALSEDPATLEEVHEPFLIQLGFLKRTPRGRVAT 306

Query: 321 PIAWQHLGIDIP 332
             A+ HLG  +P
Sbjct: 307 ERAYHHLGYPLP 318


>gi|226226035|ref|YP_002760141.1| Holliday junction DNA helicase RuvB [Gemmatimonas aurantiaca T-27]
 gi|259495667|sp|C1A611|RUVB_GEMAT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|226089226|dbj|BAH37671.1| Holliday junction DNA helicase RuvB [Gemmatimonas aurantiaca T-27]
          Length = 342

 Score =  339 bits (870), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 173/332 (52%), Positives = 233/332 (70%), Gaps = 1/332 (0%)

Query: 2   MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M R  + +  V  ED  + L LRP+ L EF GQ     +L + ++AA+AR E +DH+LF 
Sbjct: 1   MSRAEITTPEVLTEDTAVELSLRPQRLAEFIGQSRVKESLTIALDAARARKEPVDHLLFF 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++ARELGVN   TSGP + K GDL A LT+L + DVLFIDEIHRL  +
Sbjct: 61  GPPGLGKTTLADLIARELGVNLTVTSGPALEKPGDLVAPLTSLREGDVLFIDEIHRLRPV 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EE LY AMED+++D+ + +GP+AR+V +N+ RFTL+ ATTR+G+LT PL+ RFGI  +L
Sbjct: 121 IEEFLYSAMEDYRIDIRLADGPNARTVPMNIERFTLVGATTRLGMLTAPLRARFGIVHQL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY +EDL+ IV+R  ++  + +  + A EIA RSRGTPR+A RLLRRVRD+AEV     
Sbjct: 181 GFYPVEDLEVIVRRTGEVLRVEMDADGAHEIARRSRGTPRVANRLLRRVRDYAEVRANGR 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           ITRE+A+AAL  L +D  G D +D R L  I   F GGPVG+ T++A + E    IE++ 
Sbjct: 241 ITREVAEAALALLDVDHFGLDDMDGRLLRAIIEKFEGGPVGLSTMAAAIGEDPGTIEEVY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EP+++Q GF+QRTPRGR+    A++HLG   P
Sbjct: 301 EPFLVQHGFLQRTPRGRVATARAYRHLGFVPP 332


>gi|315640090|ref|ZP_07895214.1| crossover junction ATP-dependent DNA helicase RuvB [Enterococcus
           italicus DSM 15952]
 gi|315484153|gb|EFU74625.1| crossover junction ATP-dependent DNA helicase RuvB [Enterococcus
           italicus DSM 15952]
          Length = 332

 Score =  339 bits (870), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 171/328 (52%), Positives = 224/328 (68%), Gaps = 3/328 (0%)

Query: 2   MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MDR  ++S   S ED      LRP+ L ++ GQ +    L ++IEAAK R E+LDHVL  
Sbjct: 1   MDR--MISPEPSNEDLSFEKSLRPQYLSQYIGQEKVKHELAIYIEAAKKREESLDHVLLY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTT+A V+A E+ VN R+TSGP I K GDL ALL  LE  DVLFIDEIHRL  +
Sbjct: 59  GPPGLGKTTMAMVIANEMAVNIRTTSGPAIEKPGDLVALLNELEPGDVLFIDEIHRLPRV 118

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            EE+LY AMEDF +D+MVG+GP+A  V   L  FTLI ATTR G+L+ PL+DRFGI   +
Sbjct: 119 AEEMLYSAMEDFFVDIMVGQGPTAHPVHFPLPPFTLIGATTRAGMLSAPLRDRFGIVSHM 178

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y   +L  IVQR A++    + ++ A EIA RSRGTPRIA RLL+RVRDFA+V H  +
Sbjct: 179 EYYLDSELTEIVQRSAEVFSTVIQEQGAIEIARRSRGTPRIANRLLKRVRDFAQVQHDGS 238

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           IT+ +AD AL  L +D  G D +D + L  +   + GGPVG+ TI+  + E  + +ED+ 
Sbjct: 239 ITKSVADQALDVLQVDHEGLDYIDQKLLRTMIELYHGGPVGLTTIAVNIGEETETVEDMY 298

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
           EP++IQ+GFIQRT RGR+   +A++H G
Sbjct: 299 EPFLIQKGFIQRTARGRVATELAYRHFG 326


>gi|32266005|ref|NP_860037.1| Holliday junction DNA helicase RuvB [Helicobacter hepaticus ATCC
           51449]
 gi|44888425|sp|Q7VIU8|RUVB_HELHP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|32262054|gb|AAP77103.1| holliday junction DNA helicase RuvB [Helicobacter hepaticus ATCC
           51449]
          Length = 336

 Score =  339 bits (870), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 167/315 (53%), Positives = 229/315 (72%), Gaps = 8/315 (2%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP   EE+ GQ +   NLKVFIEA+K R E LDH+LF GPPGLGKTTL+ ++A E+G N
Sbjct: 14  LRPNVWEEYIGQEKIKKNLKVFIEASKKRKECLDHILFFGPPGLGKTTLSHIIAHEMGCN 73

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + ++ P+I K+GDLAA+LTNL + D+LFIDEIHRLS  +EEILYPAMEDF+LD+++G G
Sbjct: 74  IKVSAAPMIEKSGDLAAILTNLNEGDILFIDEIHRLSPAIEEILYPAMEDFRLDIIIGSG 133

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+A+++KI+L+ FTLI ATTR G+L+NPL+DRFG+  RL FYE ++L  IV   +   G 
Sbjct: 134 PAAQTLKIDLAPFTLIGATTRAGMLSNPLRDRFGMSFRLQFYEPKELSAIVICASSKLGR 193

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA-------HAKTITREIADAALLRLA 254
           +++   A EIA RSRGTPRIA RLLRRVRDFA+V        +   I+ E    AL  L 
Sbjct: 194 SLSKSGADEIARRSRGTPRIALRLLRRVRDFADVGEYAQDMRNQSEISLECVRYALNELG 253

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           ++++GFD+LDLRYL ++A + G   +G+ TI+A +SE    IED+IEPY++  G+++RT 
Sbjct: 254 VNELGFDELDLRYLAILAESRGKA-IGLNTIAAAMSEDEATIEDVIEPYLLANGYLERTA 312

Query: 315 RGRLLMPIAWQHLGI 329
           +GR+  P  ++ L I
Sbjct: 313 KGRVASPKTYELLHI 327


>gi|25010124|ref|NP_734519.1| Holliday junction DNA helicase RuvB [Streptococcus agalactiae
           NEM316]
 gi|76787346|ref|YP_328775.1| Holliday junction DNA helicase RuvB [Streptococcus agalactiae A909]
 gi|77405263|ref|ZP_00782360.1| Holliday junction DNA helicase RuvB [Streptococcus agalactiae H36B]
 gi|44888495|sp|Q8E7U6|RUVB_STRA3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|97190359|sp|Q3K3X8|RUVB_STRA1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|23094475|emb|CAD45694.1| unknown [Streptococcus agalactiae NEM316]
 gi|76562403|gb|ABA44987.1| Holliday junction DNA helicase RuvB [Streptococcus agalactiae A909]
 gi|77176159|gb|EAO78931.1| Holliday junction DNA helicase RuvB [Streptococcus agalactiae H36B]
 gi|319744005|gb|EFV96385.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           agalactiae ATCC 13813]
          Length = 332

 Score =  339 bits (870), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 166/307 (54%), Positives = 218/307 (71%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E+ GQ +    LK+FIEAAK R E+LDHVL  GPPGLGKTT+A V+A ELGVN
Sbjct: 20  LRPQYLREYIGQDKVKDQLKIFIEAAKLRDESLDHVLLFGPPGLGKTTMAFVIANELGVN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGP I K+GDL A+L +LE  DVLFIDEIHR+ + VEE+LY AMEDF +D+M+G G
Sbjct: 80  LKQTSGPAIEKSGDLVAILNDLEPGDVLFIDEIHRMPMAVEEVLYSAMEDFYIDIMIGAG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            ++RSV ++L  FTLI ATTR G+L+NPL+ RFGI   + +YE  DL  I++R A +  +
Sbjct: 140 ETSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYEENDLTEIIERTADIFEM 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T EAA E+A RSRGTPRIA RLL+RVRD+A++     I   I D AL  L +D  G D
Sbjct: 200 KITYEAASELARRSRGTPRIANRLLKRVRDYAQIMGDGLIDDNITDKALTMLDVDHEGLD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   + GGPVG+ T+S  ++E RD +ED+ EPY+IQ+GFI RT  GR+   
Sbjct: 260 YVDQKILRTMIEMYNGGPVGLGTLSVNIAEERDTVEDMYEPYLIQKGFIMRTRTGRVATD 319

Query: 322 IAWQHLG 328
            A++HLG
Sbjct: 320 KAYEHLG 326


>gi|313206903|ref|YP_004046080.1| holliday junction DNA helicase ruvb [Riemerella anatipestifer DSM
           15868]
 gi|312446219|gb|ADQ82574.1| Holliday junction DNA helicase RuvB [Riemerella anatipestifer DSM
           15868]
 gi|325335660|gb|ADZ11934.1| Holliday junction resolvasome, helicase subunit [Riemerella
           anatipestifer RA-GD]
          Length = 340

 Score =  339 bits (869), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 165/309 (53%), Positives = 222/309 (71%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP++ ++F GQ     NL+VF+ AAK R  ALDH L  GPPGLGKTTLA ++A ELGV 
Sbjct: 23  IRPQSFKDFAGQRRTLDNLEVFVAAAKKRGSALDHTLLHGPPGLGKTTLAHIIANELGVG 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           F+ TSGPV+ K G LA LLTNLE+ DVLFIDEIHRLS +VEE LY AMED+++D+M+  G
Sbjct: 83  FKVTSGPVLDKPGSLAGLLTNLEENDVLFIDEIHRLSPVVEEYLYSAMEDYKIDIMLETG 142

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARSV+INL+ FTL+ ATTR G+LT P+  RFGI  RL +Y +E L  I++R A++ G+
Sbjct: 143 PNARSVQINLNPFTLVGATTRSGMLTKPMLARFGIQSRLEYYTVELLGMIIERSARVLGI 202

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + ++AA EIA RSRGTPRIA  LLRRVRDFAE+     I  +I   AL  L +D+ G D
Sbjct: 203 PIYEDAALEIARRSRGTPRIANALLRRVRDFAEIKGNGEIEIKITKFALDSLNVDEFGLD 262

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + + ++  NF G PVGI  ++  + E  + +E++ EP++IQ+GFI RTPRGR +  
Sbjct: 263 DMDNKIMRVMIENFKGKPVGISALATSIGENPETLEEVYEPFLIQEGFIIRTPRGREVTD 322

Query: 322 IAWQHLGID 330
            A++HL I+
Sbjct: 323 KAYKHLNIN 331


>gi|139438978|ref|ZP_01772438.1| Hypothetical protein COLAER_01444 [Collinsella aerofaciens ATCC
           25986]
 gi|133775689|gb|EBA39509.1| Hypothetical protein COLAER_01444 [Collinsella aerofaciens ATCC
           25986]
          Length = 355

 Score =  339 bits (869), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 167/331 (50%), Positives = 236/331 (71%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M   E ++   ++ ED D+   LRP+ L+++ GQ     +L+V IEAA++R E LDHV+F
Sbjct: 22  MAHGERMVGSELTPEDLDVDRTLRPQRLDDYCGQEHIKQSLRVLIEAAQSRGETLDHVIF 81

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA V+A ELG   ++TSGP IA+ GDLAA+LTNL+  DVLFIDEIHRL+ 
Sbjct: 82  SGPPGLGKTTLATVIANELGAQIKTTSGPAIARTGDLAAILTNLQPGDVLFIDEIHRLNR 141

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEE+LYPAMEDF LD+++G+GP+ARS+++++ +FTL+AATTR G+LT PL+DRFGI  R
Sbjct: 142 SVEEVLYPAMEDFALDIVIGKGPAARSIRLDIPKFTLVAATTRSGMLTGPLRDRFGISYR 201

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L++Y +E+L  IV R A + G+ +   +A EI  RSRGTPR+A RLL+RVRD+A+V    
Sbjct: 202 LDYYTVEELAQIVTRSATILGVTIDHPSALEIGSRSRGTPRLANRLLKRVRDYAQVRGNG 261

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  +I   AL    ID++G D +D+R L  +A+ F G  VG+ T+++ + E    +ED+
Sbjct: 262 PIELDICRQALEFFEIDELGLDWMDIRILETLAKTFSGRAVGLTTLASAVGEDPGTLEDV 321

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
            EPY++Q G + RTP+GR      ++HLGI+
Sbjct: 322 YEPYLLQCGLMIRTPQGRQATLRTFEHLGIE 352


>gi|225867655|ref|YP_002743603.1| Holliday junction DNA helicase, subunit B [Streptococcus equi
           subsp. zooepidemicus]
 gi|259495678|sp|C0MC84|RUVB_STRS7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|225700931|emb|CAW97625.1| Holliday junction DNA helicase, subunit B [Streptococcus equi
           subsp. zooepidemicus]
          Length = 335

 Score =  339 bits (869), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 167/307 (54%), Positives = 218/307 (71%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E+ GQ      L +FIEAAK R E+LDHVL  GPPGLGKTT+A V+A ELGV+
Sbjct: 20  LRPQYLREYIGQDRVKDQLMIFIEAAKRREESLDHVLLFGPPGLGKTTMAFVIANELGVH 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGP I KAGDL A+L +LE  DVLFIDEIHR+ + VEEILY AMEDF +D+M+G G
Sbjct: 80  LKQTSGPAIEKAGDLVAILNDLEPGDVLFIDEIHRMPMAVEEILYSAMEDFYIDIMIGAG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            ++RSV + L  FTLI ATTR G+L+NPL+ RFGI   + +Y+  DL  IV+R A +  +
Sbjct: 140 DTSRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYQTADLTEIVERTADIFDM 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  EAA E+A RSRGTPRIA RLL+RVRD+A++     IT +I D AL  L +D+ G D
Sbjct: 200 EIKHEAAYELARRSRGTPRIANRLLKRVRDYAQIMGDGMITTQITDKALTMLDVDQEGLD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   + GGPVG+ T+S  ++E RD +ED+ EPY+IQ+GFI RT  GR++  
Sbjct: 260 YVDQKILRTMIEVYQGGPVGLGTLSVNIAEERDTVEDMYEPYLIQKGFIMRTRTGRVVTE 319

Query: 322 IAWQHLG 328
            A+QHLG
Sbjct: 320 KAYQHLG 326


>gi|22536234|ref|NP_687085.1| Holliday junction DNA helicase RuvB [Streptococcus agalactiae
           2603V/R]
 gi|44888492|sp|Q8E2D9|RUVB_STRA5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|22533054|gb|AAM98957.1|AE014194_2 Holliday junction DNA helicase RuvB [Streptococcus agalactiae
           2603V/R]
          Length = 332

 Score =  339 bits (869), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 166/307 (54%), Positives = 218/307 (71%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E+ GQ +    LK+FIEAAK R E+LDHVL  GPPGLGKTT+A V+A ELGVN
Sbjct: 20  LRPQYLREYIGQDKVKDQLKIFIEAAKLRDESLDHVLLFGPPGLGKTTMAFVIANELGVN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGP I K+GDL A+L +LE  DVLFIDEIHR+ + VEE+LY AMEDF +D+M+G G
Sbjct: 80  LKQTSGPAIEKSGDLVAILNDLEPGDVLFIDEIHRMPMAVEEVLYSAMEDFYIDIMIGAG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            ++RSV ++L  FTLI ATTR G+L+NPL+ RFGI   + +YE  DL  I++R A +  +
Sbjct: 140 ETSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYEENDLTEIIERTADIFEM 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T EAA E+A RSRGTPRIA RLL+RVRD+A++     I   I D AL  L +D  G D
Sbjct: 200 KITYEAASELARRSRGTPRIANRLLKRVRDYAQIMGDGLIDDNITDKALTMLDVDHEGLD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   + GGPVG+ T+S  ++E RD +ED+ EPY+IQ+GFI RT  GR+   
Sbjct: 260 YVDQKILRTMIEMYNGGPVGLGTLSVNIAEERDTVEDMYEPYLIQKGFIMRTRTGRVATV 319

Query: 322 IAWQHLG 328
            A++HLG
Sbjct: 320 KAYEHLG 326


>gi|301301361|ref|ZP_07207503.1| Holliday junction DNA helicase RuvB [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300214786|gb|ADJ79202.1| Holliday junction ATP-dependent DNA helicase ruvB [Lactobacillus
           salivarius CECT 5713]
 gi|300851021|gb|EFK78763.1| Holliday junction DNA helicase RuvB [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 336

 Score =  339 bits (869), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 173/330 (52%), Positives = 226/330 (68%), Gaps = 1/330 (0%)

Query: 1   MMDREGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M D E ++S +  + ED +   LRP+T +++ GQ      + V+I+AAK R E+LDHVL 
Sbjct: 1   MYDEERIVSGDSFEGEDLNEQSLRPQTFDQYIGQKLLKDEISVYIQAAKQREESLDHVLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA V+A E+GV  ++T+GP I K GDL ALL  LE  DVLFIDEIHRL  
Sbjct: 61  YGPPGLGKTTLATVIANEMGVKIKTTTGPAIEKPGDLVALLNELEPGDVLFIDEIHRLPK 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEEILY AMED+ +D++VG+GP+A  V   L  FTL+ ATTR GLL+ PL+ RFGI   
Sbjct: 121 NVEEILYSAMEDYFIDIIVGQGPTAHPVHFPLPPFTLVGATTRAGLLSAPLRARFGIVGH 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           + +Y   DL  I++R A++    + DE A EIA RSRGTPR+A RLL+RVRDFAEV H  
Sbjct: 181 MEYYNEVDLSQIIKRSAQILSTGIDDEGAHEIARRSRGTPRVANRLLKRVRDFAEVKHKD 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  EI   AL  L +DK+G D+ D + L  +   + GGPVG+ TI+A + E  D I D+
Sbjct: 241 KIDTEIVQFALDLLRVDKVGLDRTDRKLLKAMIELYDGGPVGLNTIAANIGEESDTIADM 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           IEPY++Q GFI+RTPRGR++   A++HLGI
Sbjct: 301 IEPYLMQIGFIKRTPRGRMVTLAAYEHLGI 330


>gi|227891122|ref|ZP_04008927.1| Holliday junction DNA helicase B [Lactobacillus salivarius ATCC
           11741]
 gi|227866996|gb|EEJ74417.1| Holliday junction DNA helicase B [Lactobacillus salivarius ATCC
           11741]
          Length = 336

 Score =  339 bits (869), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 173/330 (52%), Positives = 226/330 (68%), Gaps = 1/330 (0%)

Query: 1   MMDREGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M D E ++S +  + ED +   LRP+T +++ GQ      + V+I+AAK R E+LDHVL 
Sbjct: 1   MYDEERIVSGDSFEGEDLNEQSLRPQTFDQYIGQKLLKDEISVYIQAAKQREESLDHVLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA V+A E+GV  ++T+GP I K GDL ALL  LE  DVLFIDEIHRL  
Sbjct: 61  YGPPGLGKTTLATVIANEMGVKIKTTTGPAIEKPGDLVALLNELEPGDVLFIDEIHRLPK 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEEILY AMED+ +D++VG+GP+A  V   L  FTL+ ATTR GLL+ PL+ RFGI   
Sbjct: 121 NVEEILYSAMEDYFIDIIVGQGPTAHPVHFPLPPFTLVGATTRAGLLSAPLRARFGIVGH 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           + +Y   DL  I++R A++    + DE A EIA RSRGTPR+A RLL+RVRDFAEV H  
Sbjct: 181 MEYYNEVDLSQIIKRSAQILSTGIDDEGAHEIARRSRGTPRVANRLLKRVRDFAEVKHKD 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  EI   AL  L +DK+G D+ D + L  +   + GGPVG+ TI+A + E  D I D+
Sbjct: 241 KIDTEIVQFALDLLRVDKVGLDRTDRKLLKAMIELYDGGPVGLNTIAANIGEESDTIADM 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           IEPY++Q GFI+RTPRGR++   A++HLGI
Sbjct: 301 IEPYLMQIGFIKRTPRGRIVTLAAYEHLGI 330


>gi|76798796|ref|ZP_00781010.1| Holliday junction DNA helicase RuvB [Streptococcus agalactiae
           18RS21]
 gi|76585858|gb|EAO62402.1| Holliday junction DNA helicase RuvB [Streptococcus agalactiae
           18RS21]
          Length = 318

 Score =  338 bits (868), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 166/307 (54%), Positives = 218/307 (71%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E+ GQ +    LK+FIEAAK R E+LDHVL  GPPGLGKTT+A V+A ELGVN
Sbjct: 6   LRPQYLREYIGQDKVKDQLKIFIEAAKLRDESLDHVLLFGPPGLGKTTMAFVIANELGVN 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGP I K+GDL A+L +LE  DVLFIDEIHR+ + VEE+LY AMEDF +D+M+G G
Sbjct: 66  LKQTSGPAIEKSGDLVAILNDLEPGDVLFIDEIHRMPMAVEEVLYSAMEDFYIDIMIGAG 125

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            ++RSV ++L  FTLI ATTR G+L+NPL+ RFGI   + +YE  DL  I++R A +  +
Sbjct: 126 ETSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYEENDLTEIIERTADIFEM 185

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T EAA E+A RSRGTPRIA RLL+RVRD+A++     I   I D AL  L +D  G D
Sbjct: 186 KITYEAASELARRSRGTPRIANRLLKRVRDYAQIMGDGLIDDNITDKALTMLDVDHEGLD 245

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   + GGPVG+ T+S  ++E RD +ED+ EPY+IQ+GFI RT  GR+   
Sbjct: 246 YVDQKILRTMIEMYNGGPVGLGTLSVNIAEERDTVEDMYEPYLIQKGFIMRTRTGRVATV 305

Query: 322 IAWQHLG 328
            A++HLG
Sbjct: 306 KAYEHLG 312


>gi|283853684|ref|ZP_06370915.1| Holliday junction DNA helicase RuvB [Desulfovibrio sp. FW1012B]
 gi|283570925|gb|EFC18954.1| Holliday junction DNA helicase RuvB [Desulfovibrio sp. FW1012B]
          Length = 335

 Score =  338 bits (868), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 167/306 (54%), Positives = 224/306 (73%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  L+EF GQ E  +NL+VF+ AA  +  ALDH L  GPPGLGKTTLAQ++A ELGVN
Sbjct: 24  IRPSKLDEFIGQDELRANLRVFLRAAMEQGRALDHSLLYGPPGLGKTTLAQIMASELGVN 83

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
             +T+GPV+ + GDLAA++TNL   D+LFIDEIHR+   VEEILYPAMED++LDL++G+G
Sbjct: 84  LVTTTGPVLERCGDLAAIVTNLRRGDILFIDEIHRMPPAVEEILYPAMEDYKLDLIIGQG 143

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P AR+V+I+L  FTL+ ATTR+GLLT+PL+DRFG+  RL FY  ++L  IV R A + G+
Sbjct: 144 PGARTVRIDLEPFTLVGATTRLGLLTSPLRDRFGVIFRLEFYNPDELARIVTRAAAILGI 203

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            VT   A  +  RSRGTPRIA RLLRR+RDFA VA A T+   +A  AL RL +D  G D
Sbjct: 204 GVTPAGARVVGERSRGTPRIANRLLRRLRDFAVVAGAATLDEGLAKEALARLDVDPQGLD 263

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           Q+D + L ++  ++ GGPVG++T++  +SE    +E++ EPY+IQ G I+RTPRGR+   
Sbjct: 264 QMDRKILEVLIGHYEGGPVGVKTLAVAISEEVRTLEEIYEPYLIQCGLIKRTPRGRVATA 323

Query: 322 IAWQHL 327
            A+ H+
Sbjct: 324 KAYAHI 329


>gi|329117410|ref|ZP_08246127.1| Holliday junction DNA helicase RuvB [Streptococcus parauberis NCFD
           2020]
 gi|326907815|gb|EGE54729.1| Holliday junction DNA helicase RuvB [Streptococcus parauberis NCFD
           2020]
          Length = 332

 Score =  338 bits (868), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 165/307 (53%), Positives = 219/307 (71%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E+ GQ +    L +FIEAAK R E+LDHVL  GPPGLGKTT+A V+A ELGVN
Sbjct: 20  LRPQYLREYIGQDKVKDQLTIFIEAAKMRDESLDHVLLFGPPGLGKTTMAFVIANELGVN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGP I KAGDL A+L +LE  DVLFIDEIHR+ ++VEE+LY AMEDF +D+M+G G
Sbjct: 80  LKQTSGPAIEKAGDLVAVLNDLEPGDVLFIDEIHRMPMVVEEVLYSAMEDFYIDIMIGAG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            ++RSV ++L  FTLI ATTR G+L+NPL+ RFGI   + +Y+++DL  IV+R A +  +
Sbjct: 140 DTSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYQVDDLTEIVERTADIFEM 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  EAA E+A RSRGTPRIA RLL+RVRD+A++     IT  I D AL  L +D  G D
Sbjct: 200 EIVHEAAHELARRSRGTPRIANRLLKRVRDYAQIMGDGVITDTITDKALDMLDVDHEGLD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   + GGPVG+ T+S  ++E RD +ED+ EPY+IQ+GFI RT  GR+   
Sbjct: 260 YVDQKILRTMIEMYNGGPVGLGTLSVNIAEERDTVEDMYEPYLIQKGFIMRTRTGRVATE 319

Query: 322 IAWQHLG 328
            A++HL 
Sbjct: 320 KAYRHLN 326


>gi|254302939|ref|ZP_04970297.1| crossover junction DNA helicase RuvB [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
 gi|148323131|gb|EDK88381.1| crossover junction DNA helicase RuvB [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
          Length = 338

 Score =  338 bits (868), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 159/309 (51%), Positives = 222/309 (71%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP++ +E+ GQ      + + I+AA+ R   +DH+L  GPPGLGKTTLA V+A E+  N
Sbjct: 20  LRPKSFDEYIGQENLKEKMNISIKAAQKRNMVVDHILLYGPPGLGKTTLAGVIANEMKAN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGP++ KAGDLAA+LT+LE+ D+LFIDEIHRL+  VEEILYPAMED +LD+++G+G
Sbjct: 80  LKITSGPILEKAGDLAAILTSLEENDILFIDEIHRLNSTVEEILYPAMEDGELDIIIGKG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSA+S++I L  FTLI ATTR GLL+ PL+DRFG+  ++ +Y   ++K+I+ RGAK+ G+
Sbjct: 140 PSAKSIRIELPPFTLIGATTRAGLLSAPLRDRFGVSHKMEYYNENEIKSIIIRGAKILGV 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + ++ A EI+ RSRGTPRIA RLL+RVRD+ E+     I +  A  AL  L +D  G D
Sbjct: 200 KINEDGAIEISKRSRGTPRIANRLLKRVRDYCEIKGNGVIDKLSAKNALDMLGVDSNGLD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            LD   +  I  N+ GGPVGIET+S  L E R  +E++ EPY+++ GF++RT RGR++ P
Sbjct: 260 DLDRNIINSIIENYDGGPVGIETLSLLLGEDRRTLEEVYEPYLVKIGFLKRTNRGRVVTP 319

Query: 322 IAWQHLGID 330
            A+QH   D
Sbjct: 320 KAYQHFKKD 328


>gi|198274019|ref|ZP_03206551.1| hypothetical protein BACPLE_00156 [Bacteroides plebeius DSM 17135]
 gi|198273097|gb|EDY97366.1| hypothetical protein BACPLE_00156 [Bacteroides plebeius DSM 17135]
          Length = 341

 Score =  338 bits (868), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 169/307 (55%), Positives = 225/307 (73%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP   E+F+GQ +   NL++F++AA+ RAEALDHVL  GPPGLGKTTL+ ++A ELGV 
Sbjct: 23  LRPLQFEDFSGQDKVVDNLRIFVKAARLRAEALDHVLLHGPPGLGKTTLSNIIANELGVG 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS +VEE LY AMED+++D+M+ +G
Sbjct: 83  FKVTSGPVLDKPGDLAGVLTSLEPNDVLFIDEIHRLSPVVEEYLYSAMEDYRIDIMIDKG 142

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSARS++I+L+ FTL+ ATTR GLLT PL+ RFGI + L +Y+   L  I+ R A +  +
Sbjct: 143 PSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGINLHLEYYDDSVLSRIILRSAHILDV 202

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
               +AA EIA RSRGTPRIA  LLRRVRDFA+V  +  I  EIA  AL  L ID+ G D
Sbjct: 203 PCDADAAGEIASRSRGTPRIANALLRRVRDFAQVKGSGRIDLEIARFALEALNIDQYGLD 262

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           ++D + L  I   F GGPVG+ TI+  L E    +E++ EP++I++GF++RTPRGR +  
Sbjct: 263 EIDNKILCTIIDKFKGGPVGLTTIATALGEDPGTLEEVYEPFLIKEGFLKRTPRGREVTE 322

Query: 322 IAWQHLG 328
           +A++HLG
Sbjct: 323 LAYKHLG 329


>gi|313889567|ref|ZP_07823212.1| Holliday junction DNA helicase RuvB [Streptococcus pseudoporcinus
           SPIN 20026]
 gi|313122076|gb|EFR45170.1| Holliday junction DNA helicase RuvB [Streptococcus pseudoporcinus
           SPIN 20026]
          Length = 332

 Score =  338 bits (868), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 163/306 (53%), Positives = 220/306 (71%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E+ GQ +    L +FIEAAK R E+LDHVL  GPPGLGKTT+A V+A ELGVN
Sbjct: 20  LRPQFLREYIGQDKVKDQLNIFIEAAKMRDESLDHVLLFGPPGLGKTTMAFVIANELGVN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGP I K+GDL A+L +LE  DVLFIDEIHR+ + VEE+LY AMEDF +D+M+G G
Sbjct: 80  LKQTSGPAIEKSGDLVAILNDLEPGDVLFIDEIHRIPMAVEEVLYSAMEDFYIDIMIGAG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            ++RSV + L  FTLI ATTR G+L+NPL+ RFGI   + +Y+++DL  I++R + +  +
Sbjct: 140 DTSRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYQVDDLTEIIERTSDIFEM 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  EAA E+A RSRGTPRIA RLL+RVRD+A++     IT++I D AL  L +D+ G D
Sbjct: 200 EIVQEAAHELARRSRGTPRIANRLLKRVRDYAQIMGNGVITKDITDKALEMLDVDQEGLD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   + GGPVG+ T+S  ++E RD +ED+ EPY+IQ+GFI RT  GR+   
Sbjct: 260 YVDQKILRTMIEIYNGGPVGLGTLSVNIAEERDTVEDMYEPYLIQKGFIVRTRTGRVATQ 319

Query: 322 IAWQHL 327
            A+QHL
Sbjct: 320 KAYQHL 325


>gi|313124266|ref|YP_004034525.1| holliday junction ATP-dependent DNA helicase ruvb [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
 gi|312280829|gb|ADQ61548.1| Holliday junction ATP-dependent DNA helicase ruvB [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
          Length = 336

 Score =  338 bits (868), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 166/311 (53%), Positives = 223/311 (71%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L ++ GQ     +++V+I+AA+ R EALDHVL  GPPGLGKTTLA V+A ELGVN
Sbjct: 22  LRPQLLSQYIGQGHVKKDMEVYIQAARQRDEALDHVLLYGPPGLGKTTLAFVIANELGVN 81

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            +STSGP I +AGDL ALLT+LE  DVLFIDEIHRL+  VEE+LY AMEDF +D+MVGEG
Sbjct: 82  LKSTSGPAIERAGDLVALLTDLEPGDVLFIDEIHRLAKPVEEVLYSAMEDFYIDIMVGEG 141

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            +  ++ + L  FTLI ATT  G L+ PL+DRFGI   + +Y++EDL+ I+ R +++   
Sbjct: 142 QTTHAIHLPLPPFTLIGATTLAGQLSAPLRDRFGIVEHMQYYQVEDLEKIILRSSEVFHT 201

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            ++ +AA E+A RSRGTPR+A RLL+RVRDFAEV   K I+ E    AL +L +D  G D
Sbjct: 202 KISTQAAHELARRSRGTPRVANRLLKRVRDFAEVKGEKEISLETTAMALKQLQVDSAGLD 261

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           Q D + L  +  ++GGGPVGI T+++ + E R+ IE L EPY++Q GFI  TPRGR++  
Sbjct: 262 QTDRKLLRTMILSYGGGPVGIRTLASNIGEDRETIESLYEPYLLQNGFIVMTPRGRVVTQ 321

Query: 322 IAWQHLGIDIP 332
            A+Q L + +P
Sbjct: 322 KAYQQLNLPLP 332


>gi|223935333|ref|ZP_03627251.1| Holliday junction DNA helicase RuvB [bacterium Ellin514]
 gi|223896217|gb|EEF62660.1| Holliday junction DNA helicase RuvB [bacterium Ellin514]
          Length = 339

 Score =  338 bits (868), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 166/326 (50%), Positives = 232/326 (71%), Gaps = 1/326 (0%)

Query: 5   EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E ++S  +++ DA + + LRP    +FTGQ +    L++ + AAK R EALDH+L  GPP
Sbjct: 3   ERIISDVLTKPDAALEMTLRPSLFSDFTGQPKVKERLEITVAAAKQRNEALDHILLSGPP 62

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++A+ +G +F+STSGP I KA DLA LLTNLE  DVLFIDEIHR+   +EE
Sbjct: 63  GLGKTTLASILAKAMGASFKSTSGPTIEKAADLAGLLTNLEAGDVLFIDEIHRMQPAIEE 122

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
            LYPAMEDF+LD+++ +GP+ARSV++NL RFTL+ ATTR GLL+ PL  RF +  RL++Y
Sbjct: 123 YLYPAMEDFKLDIIIDQGPNARSVRLNLPRFTLVGATTRSGLLSAPLLTRFPVRERLDYY 182

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           + E L+ IV R A+L  + +    A EIA RSRGTPRI   LLRRVRDFA+V     IT+
Sbjct: 183 QAEQLEKIVLRSARLLNVEIEPSGAHEIARRSRGTPRITNNLLRRVRDFAQVRSDGNITK 242

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           +IAD AL  L ID+ G D++D R L  +   F GGPVG+ +++  + E  D +E++ EPY
Sbjct: 243 DIADKALAMLEIDENGLDEMDKRILEAVIVKFSGGPVGVSSLAVTVGEEPDTLEEVYEPY 302

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGI 329
           +I +G+++RTP+GR+   ++++ LG+
Sbjct: 303 LIMEGYLKRTPQGRVATELSYKKLGL 328


>gi|332523602|ref|ZP_08399854.1| Holliday junction DNA helicase RuvB [Streptococcus porcinus str.
           Jelinkova 176]
 gi|332314866|gb|EGJ27851.1| Holliday junction DNA helicase RuvB [Streptococcus porcinus str.
           Jelinkova 176]
          Length = 332

 Score =  338 bits (868), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 163/306 (53%), Positives = 219/306 (71%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E+ GQ +    L +FIEAAK R E+LDHVL  GPPGLGKTT+A V+A ELGVN
Sbjct: 20  LRPQFLREYIGQDKVKDQLNIFIEAAKMRDESLDHVLLFGPPGLGKTTMAFVIANELGVN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGP I K+GDL A+L +LE  DVLFIDEIHR+ + VEE+LY AMEDF +D+M+G G
Sbjct: 80  LKQTSGPAIEKSGDLVAILNDLEPGDVLFIDEIHRIPMAVEEVLYSAMEDFYIDIMIGAG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            ++RSV + L  FTLI ATTR G+L+NPL+ RFGI   + +Y+++DL  I++R + +  +
Sbjct: 140 DTSRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYQVDDLTEIIERTSDIFDM 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  EAA E+A RSRGTPRIA RLL+RVRD+A++     IT++I D AL  L +D  G D
Sbjct: 200 EIVQEAAHELARRSRGTPRIANRLLKRVRDYAQIMGNGIITKDITDKALEMLDVDHEGLD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   + GGPVG+ T+S  ++E RD +ED+ EPY+IQ+GFI RT  GR+   
Sbjct: 260 YVDQKILRTMIEMYNGGPVGLGTLSVNIAEERDTVEDMYEPYLIQKGFIVRTRTGRVATQ 319

Query: 322 IAWQHL 327
            A+QHL
Sbjct: 320 KAYQHL 325


>gi|157738008|ref|YP_001490692.1| Holliday junction DNA helicase RuvB [Arcobacter butzleri RM4018]
 gi|167012666|sp|A8EVP9|RUVB_ARCB4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|157699862|gb|ABV68022.1| holliday junction DNA helicase RuvB [Arcobacter butzleri RM4018]
          Length = 345

 Score =  338 bits (867), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 163/319 (51%), Positives = 231/319 (72%), Gaps = 1/319 (0%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           +ED +   LRP   +++ GQ +   NL+VFI+A+K R EALDH+LF GPPGLGKTTL+ +
Sbjct: 13  EEDNNEISLRPSNWDDYIGQEKIKKNLRVFIDASKKRKEALDHILFYGPPGLGKTTLSYL 72

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           ++ E+  N + T+GP+I K+GDLAA+LTNLE+ D+LFIDEIHRLS  VEEILYPAMED++
Sbjct: 73  ISNEMNTNIKVTAGPMIEKSGDLAAILTNLEEGDILFIDEIHRLSPAVEEILYPAMEDYR 132

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           LD+++G GP+A++VKI+L RFTLI ATTR G+L+NPL++RFG+  R+ FY   +L  I+Q
Sbjct: 133 LDIIIGSGPAAQTVKIDLPRFTLIGATTRAGMLSNPLRERFGMHFRMQFYTEIELAKIIQ 192

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           + +   G    D+A+ EI+ RSRGTPR+A RLLRRVRDF+EV + K+I  +    AL  L
Sbjct: 193 KASLKLGKNCEDDASLEISKRSRGTPRVALRLLRRVRDFSEVENEKSIHLQRCKYALDEL 252

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +++ GFD++D+  L ++  N  G P+G+ TI+A LSE    IED IEPY++  G+I+RT
Sbjct: 253 GVNESGFDEMDINLLELLISN-RGKPMGLSTIAAALSEDEGTIEDAIEPYLLANGYIERT 311

Query: 314 PRGRLLMPIAWQHLGIDIP 332
            RGR+     ++   +  P
Sbjct: 312 ARGRVASVKTYEMFRLSYP 330


>gi|116493019|ref|YP_804754.1| Holliday junction DNA helicase RuvB [Pediococcus pentosaceus ATCC
           25745]
 gi|122265517|sp|Q03ER0|RUVB_PEDPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|116103169|gb|ABJ68312.1| Holliday junction DNA helicase subunit RuvB [Pediococcus
           pentosaceus ATCC 25745]
          Length = 337

 Score =  338 bits (867), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 168/316 (53%), Positives = 223/316 (70%), Gaps = 1/316 (0%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           +E+ ++SL RP+TL ++ GQ +    L+V+I AAK R EALDHVL  GPPGLGKTTLA V
Sbjct: 16  EENEELSL-RPQTLHQYIGQDQIKHELEVYIAAAKNREEALDHVLLYGPPGLGKTTLAMV 74

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +A E+ V  R+TSGP I K GDL ALL  L+  DVLFIDEIHRL  +VEE+LY AMEDF 
Sbjct: 75  IANEMNVQIRTTSGPAIEKPGDLVALLNELQPGDVLFIDEIHRLPKVVEEMLYSAMEDFF 134

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           +D++VG+GP+A  +   L  FTLI ATTR GLL+ PL+DRFGI   +N+Y   DL  IV+
Sbjct: 135 VDIVVGQGPTAHPIHFPLPPFTLIGATTRAGLLSAPLRDRFGIVEHMNYYNEADLANIVR 194

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A +    + D+ A EIA RSRGTPRI+ RLL+R+RDFAEV +   I R++   +L  L
Sbjct: 195 RSAGIFNSHIDDQGAYEIASRSRGTPRISNRLLKRIRDFAEVENDGQIDRQLVSQSLKLL 254

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D  G D+ D + LT +   +GGGPVGI TI+A + E  D I ++ EPY++Q GF++RT
Sbjct: 255 QVDNRGLDRTDKKVLTTMIELYGGGPVGISTIAANIGEEPDTISEMYEPYLLQIGFLKRT 314

Query: 314 PRGRLLMPIAWQHLGI 329
           PRGR++   A++HLG+
Sbjct: 315 PRGRMVTERAYEHLGL 330


>gi|260772520|ref|ZP_05881436.1| holliday junction DNA helicase RuvB [Vibrio metschnikovii CIP
           69.14]
 gi|260611659|gb|EEX36862.1| holliday junction DNA helicase RuvB [Vibrio metschnikovii CIP
           69.14]
          Length = 355

 Score =  338 bits (867), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 162/282 (57%), Positives = 214/282 (75%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L ++ GQ      +++FI+AA+ R+E LDH+L  GPPGLGKTTLA +VA E+ VN
Sbjct: 25  IRPKKLADYQGQDHVRDQMEIFIQAAQKRSEPLDHLLIFGPPGLGKTTLANIVANEMDVN 84

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R+TSGPV+ KAGDLAALLTNL++ DVLFIDEIHRLS ++EE+LYPAMED+QLD+M+GEG
Sbjct: 85  IRTTSGPVLEKAGDLAALLTNLDENDVLFIDEIHRLSPMIEEVLYPAMEDYQLDIMIGEG 144

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  RL +Y + DL+ IVQR A+  GL
Sbjct: 145 PAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEYYNVADLQNIVQRSAQCLGL 204

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
           ++  + A E+A R+RGTPRIA RLLRRVRD+AEV     I  + A  AL  L +D +GFD
Sbjct: 205 SMDADGALEVARRARGTPRIANRLLRRVRDYAEVKGNGHICLDTAGKALDMLDVDHLGFD 264

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
            +D + L  I   F GGPVG++ ++A + E +D IED++EP+
Sbjct: 265 YMDRKLLLAIMEKFSGGPVGLDNLAAAIGEEKDTIEDVLEPF 306


>gi|90962100|ref|YP_536016.1| Holliday junction DNA helicase RuvB [Lactobacillus salivarius
           UCC118]
 gi|123086776|sp|Q1WT18|RUVB_LACS1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|90821294|gb|ABD99933.1| Holliday junction DNA helicase [Lactobacillus salivarius UCC118]
          Length = 336

 Score =  338 bits (867), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 173/330 (52%), Positives = 226/330 (68%), Gaps = 1/330 (0%)

Query: 1   MMDREGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M D E ++S +  + ED +   LRP+T +++ GQ      + V+I+AAK R E+LDHVL 
Sbjct: 1   MYDEERIVSGDSFEGEDLNEQSLRPQTFDQYIGQKLLKDEISVYIQAAKQREESLDHVLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA V+A E+GV  ++T+GP I K GDL ALL  LE  DVLFIDEIHRL  
Sbjct: 61  YGPPGLGKTTLAIVIANEMGVKIKTTTGPAIEKPGDLVALLNELEPGDVLFIDEIHRLPK 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEEILY AMED+ +D++VG+GP+A  V   L  FTL+ ATTR GLL+ PL+ RFGI   
Sbjct: 121 NVEEILYSAMEDYFIDIIVGQGPTAHPVHFPLPPFTLVGATTRAGLLSAPLRARFGIVGH 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           + +Y   DL  I++R A++    + DE A EIA RSRGTPR+A RLL+RVRDFAEV H  
Sbjct: 181 MEYYNEVDLSQIIKRSAQILSTGIDDEGAHEIARRSRGTPRVANRLLKRVRDFAEVKHKD 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  EI   AL  L +DK+G D+ D + L  +   + GGPVG+ TI+A + E  D I D+
Sbjct: 241 KIDTEIVQFALDLLRVDKVGLDRTDRKLLKAMIELYDGGPVGLNTIAANIGEESDTIADM 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           IEPY++Q GFI+RTPRGR++   A++HLGI
Sbjct: 301 IEPYLMQIGFIKRTPRGRMVTLAAYEHLGI 330


>gi|167753239|ref|ZP_02425366.1| hypothetical protein ALIPUT_01510 [Alistipes putredinis DSM 17216]
 gi|167659170|gb|EDS03300.1| hypothetical protein ALIPUT_01510 [Alistipes putredinis DSM 17216]
          Length = 338

 Score =  338 bits (866), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 170/323 (52%), Positives = 227/323 (70%), Gaps = 3/323 (0%)

Query: 10  RNVSQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           +N+   ++D+     +RPR L+ F GQ +   NL++FI+AA  R ++LDHVL  GPPGLG
Sbjct: 5   KNIRNIESDLEFENQIRPRELDNFAGQEKIVDNLRIFIQAALMRGDSLDHVLLHGPPGLG 64

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTTLA ++A E+    + TSGPV+ K GDLA LLTNL   DVLFIDEIHRLS +VEE LY
Sbjct: 65  KTTLANIIANEMHAQLKVTSGPVLDKPGDLAGLLTNLNPGDVLFIDEIHRLSPLVEEYLY 124

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            AMED+++D+++ +GPSARS++I L+ FTLI ATTR GLLT+PL+ RFGI   L +Y+  
Sbjct: 125 SAMEDYKIDIVLDKGPSARSIQIELAPFTLIGATTRSGLLTSPLRARFGIQCHLEYYDSS 184

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
            LK IV R A++  +++  +AA EIA+RSRGTPRIA  LLRRVRDFA V     I  +I 
Sbjct: 185 VLKGIVNRSARILDVSIDSDAALEIALRSRGTPRIANALLRRVRDFAMVKGEGHIDLDIT 244

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
             AL  L ID  G DQ+D + L+ I   FGGGPVG+ TI+  +SE    IE++ EP++I+
Sbjct: 245 RFALTALNIDSRGLDQMDNKILSTIIEKFGGGPVGLNTIATAVSEDAGTIEEVYEPFLIK 304

Query: 307 QGFIQRTPRGRLLMPIAWQHLGI 329
           +GF++RTPRGR    +A+ HLG 
Sbjct: 305 EGFLKRTPRGREATEMAYAHLGF 327


>gi|257462825|ref|ZP_05627231.1| Holliday junction DNA helicase RuvB [Fusobacterium sp. D12]
 gi|317060454|ref|ZP_07924939.1| holliday junction DNA helicase ruvB [Fusobacterium sp. D12]
 gi|313686130|gb|EFS22965.1| holliday junction DNA helicase ruvB [Fusobacterium sp. D12]
          Length = 334

 Score =  338 bits (866), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 170/309 (55%), Positives = 221/309 (71%), Gaps = 3/309 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPRT +E+ GQ      + + I+AAK R   +DHVL  GPPGLGKTTLA V+A E+G N
Sbjct: 20  LRPRTFQEYIGQESLKEKIFISIQAAKRRGTVIDHVLLYGPPGLGKTTLAGVIANEMGSN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGPV+ KAGDLAA+LT+LE+ DVLFIDEIHRL+  VEEILYPAMED +LD+++G+G
Sbjct: 80  LKITSGPVLEKAGDLAAILTSLEENDVLFIDEIHRLNTAVEEILYPAMEDRELDIIIGKG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS++I L  FTLI ATTR GLL+ PL+DRFGI  ++ +Y   ++K I+ RG K+  +
Sbjct: 140 PAARSIRIELPNFTLIGATTRAGLLSAPLRDRFGISHKMEYYTEREVKEIILRGGKILEV 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            V    A E+A RSRGTPRIA RLL+RVRD+AE+     IT+ IA  AL  L +D  G D
Sbjct: 200 EVEQAGAEELAKRSRGTPRIANRLLKRVRDYAEIRGEGIITKNIAIQALNLLGVDVEGLD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           +LD   L  I  N+GGGPVGIET+S  L E R  +E++ EPY+IQ+GF++RT RGR+   
Sbjct: 260 ELDRNILHAIFENYGGGPVGIETLSLLLGEDRRTLEEVYEPYLIQKGFLKRTTRGRVATS 319

Query: 322 IA---WQHL 327
            A   W+ +
Sbjct: 320 KATVYWKKM 328


>gi|260663387|ref|ZP_05864278.1| Holliday junction DNA helicase RuvB [Lactobacillus fermentum
           28-3-CHN]
 gi|260552239|gb|EEX25291.1| Holliday junction DNA helicase RuvB [Lactobacillus fermentum
           28-3-CHN]
          Length = 339

 Score =  338 bits (866), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 172/329 (52%), Positives = 226/329 (68%), Gaps = 2/329 (0%)

Query: 3   DREGLLSRNVS--QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           D + +LS  V+  QE  D   LRP+TL  + GQ      L V+I+AAK+R EALDHVL  
Sbjct: 4   DFDDVLSNEVTDDQEGRDEVSLRPQTLATYIGQARIKHELAVYIQAAKSRGEALDHVLLY 63

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA V+A E+ V  ++TSGP I K GDL ALL +L+  +VLFIDEIHRL  +
Sbjct: 64  GPPGLGKTTLAMVIANEMQVAIKTTSGPAIEKPGDLVALLNDLKPGNVLFIDEIHRLPKV 123

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LY AMEDF +D++VGEGP+A  V   L  FTLI ATTR GLL  PL+DRFGI  R+
Sbjct: 124 VEEMLYSAMEDFYIDIVVGEGPTAHPVHFPLPPFTLIGATTRAGLLAAPLRDRFGIVARM 183

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           ++Y   +L  I+ R A +    + ++ A E+A+RSRGTPRIA RLL+RVRDFA+V     
Sbjct: 184 DYYTTTELSQIIDRSATIFNTKIQEDGAHELALRSRGTPRIANRLLKRVRDFAQVGGQAA 243

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I     D AL  LA+D  G D++D + LT +  ++ GGPVGI TI+A + E  + IE++ 
Sbjct: 244 IDPATVDRALDLLAVDDQGLDEIDRKLLTTMIEHYHGGPVGIRTIAANIGEEVNTIEEMY 303

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           EPY++Q GF+ RTPRGR++ P A++HL I
Sbjct: 304 EPYLLQIGFLMRTPRGRVVTPAAYEHLKI 332


>gi|149276279|ref|ZP_01882423.1| Holliday junction DNA helicase B [Pedobacter sp. BAL39]
 gi|149232799|gb|EDM38174.1| Holliday junction DNA helicase B [Pedobacter sp. BAL39]
          Length = 362

 Score =  338 bits (866), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 172/325 (52%), Positives = 229/325 (70%), Gaps = 1/325 (0%)

Query: 9   SRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           S N+S  + DI  +LRP+  E+FTGQ +   NLK+F++AAK R E LDHVL  GPPGLGK
Sbjct: 31  SENLSPVERDIEKVLRPQAFEDFTGQDKIMENLKIFVKAAKLRGEPLDHVLLHGPPGLGK 90

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127
           TTL+ ++A E+ V  + TSGPV+ K GDLA LLT L+  D+LFIDEIHRLS +VEE LY 
Sbjct: 91  TTLSYIIANEMSVGIKVTSGPVLDKPGDLAGLLTGLDTGDILFIDEIHRLSPLVEEYLYS 150

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           AMEDF++D+M+  GP+ARSV+I+L+ FTL+ ATTR GLLT PL+ RFGI  RL +Y+ + 
Sbjct: 151 AMEDFKIDIMLESGPNARSVQISLNPFTLVGATTRSGLLTAPLRARFGINSRLAYYDAKL 210

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           L TIV R +++    +T+E A EIA RSRGTPRIA  LLRR RDFA++    TI  EI+ 
Sbjct: 211 LTTIVLRSSQILKTPITEEGAYEIARRSRGTPRIANALLRRTRDFAQIKGDGTINTEISR 270

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
            AL  L +D+ G D++D + L  I   F GGPVG++TI+  + E    IE++ EP++IQ+
Sbjct: 271 YALKALNVDEHGLDEMDNKILVTIIDKFKGGPVGLKTIATAVGEDEGTIEEVYEPFLIQE 330

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIP 332
           GF+ RT RGR     A++HL  + P
Sbjct: 331 GFLMRTSRGREATEAAYKHLQKNFP 355


>gi|227484943|ref|ZP_03915259.1| crossover junction endoribonuclease subunit B [Anaerococcus
           lactolyticus ATCC 51172]
 gi|227237098|gb|EEI87113.1| crossover junction endoribonuclease subunit B [Anaerococcus
           lactolyticus ATCC 51172]
          Length = 335

 Score =  338 bits (866), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 165/308 (53%), Positives = 219/308 (71%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L ++ GQ +    L +FI+++ +R E LDHVL  GPPGLGKTTL+ ++A ELGVN
Sbjct: 24  IRPKWLRDYIGQDKVKEKLDIFIKSSLSREEPLDHVLLQGPPGLGKTTLSTIIANELGVN 83

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGP I K  DLA++LTNL + DVLFIDEIHR++  VEEILY AMEDF LD++VG+G
Sbjct: 84  LRVTSGPAIEKPSDLASILTNLAEGDVLFIDEIHRINRSVEEILYSAMEDFVLDIIVGKG 143

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+A+S++I+L +FTLI ATTR G+L+ PL+DRFG+ + LN Y   DL TIV+R A +  +
Sbjct: 144 PNAQSIRIDLEKFTLIGATTRAGMLSAPLRDRFGVLLSLNLYNSNDLTTIVKRSANILDI 203

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + D+ A EIA RSRGTPRIA RLL+RVRD+A V     I  E +   L  L ID MG D
Sbjct: 204 PIDDKGAIEIAKRSRGTPRIANRLLKRVRDYAIVKADDKIDYETSRKGLELLEIDPMGLD 263

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + +  +  NF GGPVG++TI+A        IED+ EPY++Q GFI RTPRGR+L  
Sbjct: 264 TMDKKIILTMYENFAGGPVGVDTIAASTGIENVTIEDVYEPYLLQIGFISRTPRGRVLTR 323

Query: 322 IAWQHLGI 329
            A++H G+
Sbjct: 324 KAYEHYGL 331


>gi|255536338|ref|YP_003096709.1| Holliday junction DNA helicase RuvB [Flavobacteriaceae bacterium
           3519-10]
 gi|255342534|gb|ACU08647.1| Holliday junction DNA helicase RuvB [Flavobacteriaceae bacterium
           3519-10]
          Length = 346

 Score =  337 bits (865), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 170/332 (51%), Positives = 230/332 (69%), Gaps = 4/332 (1%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           D++      + QE+     +RP++ ++F GQ +   NL+VF+ AAK R  ALDHVL  GP
Sbjct: 14  DKDNFTDDELLQEEK----IRPQSFQDFAGQRKTLDNLEVFVAAAKNRGGALDHVLLHGP 69

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++A ELGV  + TSGPV+ K G LA LLTNLE+ DVLFIDEIHRLS IVE
Sbjct: 70  PGLGKTTLAHIIANELGVGCKITSGPVLDKPGSLAGLLTNLEENDVLFIDEIHRLSPIVE 129

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E LY AMED+++D+M+  GP+ARSV+I L+ FTL+ ATTR G+LT P+  RFGI  RL +
Sbjct: 130 EYLYSAMEDYKIDIMLESGPNARSVQIGLNPFTLVGATTRSGMLTKPMLARFGIQSRLEY 189

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y IE L  I++R A++ G+ + ++AA EIA RSRGTPRIA  LLRRVRDFAE+     I 
Sbjct: 190 YTIELLGMIIERSARVLGVKIYEDAALEIARRSRGTPRIANALLRRVRDFAEIKGNGEIE 249

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             I   AL  L +D+ G D +D + + ++  NF G PVGI  ++  + E  + +E++ EP
Sbjct: 250 IGITKFALNSLNVDEFGLDDMDNKIMRVMIENFRGKPVGISALATSIGENPETLEEVYEP 309

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           ++IQ+GF+ RTPRGR +   A++HL I +P R
Sbjct: 310 FLIQEGFMIRTPRGREVTEKAYKHLNISLPRR 341


>gi|226356836|ref|YP_002786576.1| Holliday junction DNA helicase RuvB [Deinococcus deserti VCD115]
 gi|226318826|gb|ACO46822.1| putative Holliday junction ATP-dependent DNA helicase ruvB
           [Deinococcus deserti VCD115]
          Length = 334

 Score =  337 bits (865), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 170/311 (54%), Positives = 223/311 (71%), Gaps = 1/311 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+TL E+ GQ +    L V+++AAK R EALDH L  GPPGLGKTTLA ++A ELGVN
Sbjct: 12  LRPKTLTEYVGQEKLKDKLGVYLQAAKGRREALDHTLLFGPPGLGKTTLAHIIAAELGVN 71

Query: 82  FRSTSGPVIAKAGDLAALLTN-LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
            R TSGP I K GDLAA+LTN LE+ DVLFIDEIHRL  + EE LYPAMEDF+LD+++G+
Sbjct: 72  IRVTSGPAIEKPGDLAAILTNSLEEGDVLFIDEIHRLGRVAEEHLYPAMEDFKLDIVLGQ 131

Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
           GP+AR++++ L RFTL+ ATTR GL+T P++ RFGI   L +Y  E++ T + R A+L G
Sbjct: 132 GPAARTIELPLPRFTLVGATTRPGLITAPMRSRFGIIEHLEYYTAEEIGTNLLRDARLLG 191

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGF 260
             + ++AA EI  RSRGT RIA RLLRRVRD+A+VA    I+ E A  AL +  +D  G 
Sbjct: 192 FGLEEDAALEIGARSRGTMRIAKRLLRRVRDYADVAGETVISLERAHDALDKQGLDAAGL 251

Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320
           D  D +YL  +   F GGPVG++T++  +SE    +ED+ EPY+IQ GFI+RTPRGR+  
Sbjct: 252 DDRDKKYLETLIHRFAGGPVGVDTLATAISEDALTLEDVYEPYLIQLGFIKRTPRGRVAT 311

Query: 321 PIAWQHLGIDI 331
             A+ HLG+ +
Sbjct: 312 AHAYDHLGLPV 322


>gi|189460625|ref|ZP_03009410.1| hypothetical protein BACCOP_01266 [Bacteroides coprocola DSM 17136]
 gi|189432584|gb|EDV01569.1| hypothetical protein BACCOP_01266 [Bacteroides coprocola DSM 17136]
          Length = 342

 Score =  337 bits (865), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 168/307 (54%), Positives = 225/307 (73%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP    +F+GQ +   NL++F++AA+ RAEALDHVL  GPPGLGKTTL+ ++A ELGV 
Sbjct: 23  LRPLQFGDFSGQDKVVDNLRIFVKAARLRAEALDHVLLHGPPGLGKTTLSNIIANELGVG 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS +VEE LY AMED+++D+M+ +G
Sbjct: 83  FKVTSGPVLDKPGDLAGVLTSLEPNDVLFIDEIHRLSPVVEEYLYSAMEDYRIDIMIDKG 142

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSARS++++L+ FTL+ ATTR GLLT PL+ RFGI + L +Y+   L  I+ R A + G+
Sbjct: 143 PSARSIQLDLNPFTLVGATTRSGLLTAPLRARFGINLHLEYYDDAVLSRIILRSASILGI 202

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
               +AA EIA RSRGTPRIA  LLRRVRDFA+V  +  I  EIA  AL  L ID+ G D
Sbjct: 203 PCDVDAAGEIASRSRGTPRIANALLRRVRDFAQVKGSGRIDVEIARYALEALNIDRYGLD 262

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           ++D + L  I   F GGPVG+ TI+  L E    +E++ EP++I++GF++RTPRGR +  
Sbjct: 263 EIDNKILCTIIDKFKGGPVGLTTIATALGEDPGTLEEVYEPFLIKEGFLKRTPRGREVTE 322

Query: 322 IAWQHLG 328
           +A++HLG
Sbjct: 323 LAYKHLG 329


>gi|258648908|ref|ZP_05736377.1| holliday junction DNA helicase RuvB [Prevotella tannerae ATCC
           51259]
 gi|260850940|gb|EEX70809.1| holliday junction DNA helicase RuvB [Prevotella tannerae ATCC
           51259]
          Length = 346

 Score =  337 bits (864), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 171/311 (54%), Positives = 223/311 (71%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP   ++F+GQ +   NL+VF+EAAK R E LDH L  GPPGLGKTTLA ++A ELGV 
Sbjct: 26  LRPLRFDDFSGQQKVVDNLRVFVEAAKYRGEPLDHTLLHGPPGLGKTTLANIIANELGVG 85

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           F+ TSGPV+ K GDLA LLT+LE  DVLFIDEIHRL  +VEE LY AMED+++D+M+  G
Sbjct: 86  FKLTSGPVLDKPGDLAGLLTSLEPHDVLFIDEIHRLQPVVEEYLYSAMEDYRIDIMIDRG 145

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS++++L+ FTLI ATTR GLLT PL+ RFGI + L +Y+   + +I+ R A + G+
Sbjct: 146 PAARSIQLDLNPFTLIGATTRSGLLTAPLRARFGINLHLEYYDALTIGSILTRSAGILGV 205

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + DEA  EIA RSRGTPRIA  LLRRVRDFA+V    TI  EIA+ AL  L ID+ G D
Sbjct: 206 PLKDEARKEIAGRSRGTPRIANALLRRVRDFAQVKGTGTIDPEIANFALEALNIDRYGLD 265

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             D + L  I   F GGPVGI TI+  + E    +E++ EP++I++GFI+RTPRGR +  
Sbjct: 266 DTDNKILLTIIDKFKGGPVGIGTIATAIGEDPGTLEEVYEPFLIKEGFIRRTPRGREVTE 325

Query: 322 IAWQHLGIDIP 332
           +A++HL   +P
Sbjct: 326 LAFKHLNRPLP 336


>gi|225853859|ref|YP_002735371.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae JJA]
 gi|254767444|sp|C1CC50|RUVB_STRZJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|225723832|gb|ACO19685.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae JJA]
          Length = 332

 Score =  337 bits (864), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 168/313 (53%), Positives = 217/313 (69%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E+ GQ +    L++FIEAAK R EALDHVL  GPPGLGKTT+A V+A ELGVN
Sbjct: 20  LRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANELGVN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGPVI KAGDL A+L  LE  DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G
Sbjct: 80  LKQTSGPVIEKAGDLVAILNELEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
             +RSV + L  FTLI ATTR G+L+NPL+ RFGI   + +Y    L  IV+R A +  +
Sbjct: 140 EGSRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYAHAGLTEIVERTADIFEM 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T EAA E+A+RSRGTPRIA RLL+RVRDFA++     I   I D AL  L +D  G D
Sbjct: 200 EITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGNGVIDDIITDKALTMLDVDHEGLD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   + GGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GFI RT  GR+   
Sbjct: 260 YVDQKILRTMIEMYSGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRSGRVATA 319

Query: 322 IAWQHLGIDIPHR 334
            A++HLG +   +
Sbjct: 320 KAYEHLGYEYSEK 332


>gi|222151526|ref|YP_002560682.1| holliday junction DNA helicase RuvB [Macrococcus caseolyticus
           JCSC5402]
 gi|254767431|sp|B9E718|RUVB_MACCJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|222120651|dbj|BAH17986.1| holliday junction DNA helicase RuvB [Macrococcus caseolyticus
           JCSC5402]
          Length = 337

 Score =  337 bits (864), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 164/308 (53%), Positives = 224/308 (72%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP  L ++ GQ +   NL VFI+AAK R EALDHVL  GPPGLGKTTLA ++A EL VN
Sbjct: 22  LRPERLSQYIGQHKIKENLDVFIQAAKLRNEALDHVLLYGPPGLGKTTLANIIAHELDVN 81

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGP I + GDLAA+L++L   DVLFIDEIHR+S +VEE+LYPAMEDF LD++VG+G
Sbjct: 82  IKITSGPSIERPGDLAAILSSLNAGDVLFIDEIHRISRVVEEVLYPAMEDFCLDIVVGKG 141

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
             ARS++I+L  FTL+ ATTR G L+ PL+DRFG+ +RL++Y+++DL  IV R A +  +
Sbjct: 142 EEARSIRIDLPPFTLVGATTRAGSLSAPLRDRFGVHLRLDYYDMKDLSHIVSRTADVFEV 201

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
           ++  ++  EIA+RSRGTPRIA RLL+RVRDFA+V +   I  E+   AL  L +D+ G D
Sbjct: 202 SIDAQSVQEIALRSRGTPRIANRLLKRVRDFAQVRNNGLIDIEMTTQALNLLQVDRYGLD 261

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  I   + GGPVG++TI+  + E R  +ED+ EPY+IQ+G ++RT RGR+   
Sbjct: 262 HIDHKILRAIIERYNGGPVGLDTIAVSIGEERITLEDVYEPYLIQKGLLERTARGRVATI 321

Query: 322 IAWQHLGI 329
            A++HL +
Sbjct: 322 HAYEHLNV 329


>gi|237742214|ref|ZP_04572695.1| holliday junction DNA helicase ruvB [Fusobacterium sp. 4_1_13]
 gi|256845487|ref|ZP_05550945.1| Holliday junction DNA helicase RuvB [Fusobacterium sp. 3_1_36A2]
 gi|294785207|ref|ZP_06750495.1| holliday junction DNA helicase RuvB [Fusobacterium sp. 3_1_27]
 gi|229429862|gb|EEO40074.1| holliday junction DNA helicase ruvB [Fusobacterium sp. 4_1_13]
 gi|256719046|gb|EEU32601.1| Holliday junction DNA helicase RuvB [Fusobacterium sp. 3_1_36A2]
 gi|294486921|gb|EFG34283.1| holliday junction DNA helicase RuvB [Fusobacterium sp. 3_1_27]
          Length = 338

 Score =  337 bits (864), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 158/306 (51%), Positives = 221/306 (72%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP++ +E+ GQ      + + I+AA+ R   +DH+L  GPPGLGKTTLA V+A E+  N
Sbjct: 20  LRPKSFDEYIGQENLKEKMSISIKAAQKRNMVVDHILLYGPPGLGKTTLAGVIANEMKAN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGP++ KAGDLAA+LT+LE+ D+LFIDEIHRL+  VEEILYPAMED +LD+++G+G
Sbjct: 80  LKITSGPILEKAGDLAAILTSLEENDILFIDEIHRLNSTVEEILYPAMEDGELDIIIGKG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSA+S++I L  FTLI ATTR GLL+ PL+DRFG+  ++ +Y   ++K+I+ RGAK+ G+
Sbjct: 140 PSAKSIRIELPPFTLIGATTRAGLLSAPLRDRFGVSHKMEYYNENEIKSIIIRGAKILGV 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + ++ A EI+ RSRGTPRIA RLL+RVRD+ E+    TI +  A  AL  L +D  G D
Sbjct: 200 KINEDGAIEISKRSRGTPRIANRLLKRVRDYCEIKGNGTIDKLSAKNALDMLGVDSNGLD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            LD   +  I  N+ GGPVGIET+S  L E R  +E++ EPY+++ GF++RT RGR++  
Sbjct: 260 DLDRNIINSIIENYDGGPVGIETLSLLLGEDRRTLEEVYEPYLVKIGFLKRTNRGRIVTS 319

Query: 322 IAWQHL 327
            A+QH 
Sbjct: 320 KAYQHF 325


>gi|320528953|ref|ZP_08030045.1| Holliday junction DNA helicase RuvB [Selenomonas artemidis F0399]
 gi|320138583|gb|EFW30473.1| Holliday junction DNA helicase RuvB [Selenomonas artemidis F0399]
          Length = 344

 Score =  337 bits (864), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 171/330 (51%), Positives = 227/330 (68%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           + E L+S      D     LRPR L E+ GQ +   NL  FI+AA +R EALDHVL  GP
Sbjct: 5   NEEELVSFEEQSTDGWQYSLRPRRLSEYIGQDKIKDNLSKFIQAALSRGEALDHVLLYGP 64

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++A E+G NFR TS P I + GDLA+LLTNL+D DVLFIDEIHRLS  VE
Sbjct: 65  PGLGKTTLAGIIANEMGANFRQTSAPAIERQGDLASLLTNLQDHDVLFIDEIHRLSHHVE 124

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILY AMED  +D+++G+GPSARS++++L+ FTL+ ATT+ G L+ PL+DRFGI  RL +
Sbjct: 125 EILYSAMEDHAIDIIIGKGPSARSIRLDLAPFTLVGATTKTGALSAPLRDRFGIQTRLEY 184

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  E L  I++R A++  + +  E A EIA RSRGTPR+A R+L+RVRD A+VA    I+
Sbjct: 185 YTPEALLLIIERTAEILSVTIEHEGALEIARRSRGTPRVANRILKRVRDIAQVAGEDIIS 244

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            +   AAL  L +D+ G +  D   L ++   F G PVG++T++A LSE  + IED+ EP
Sbjct: 245 HKTTLAALTALEVDEQGLENKDRTMLEVMITKFSGRPVGLKTLAAALSEMPETIEDVYEP 304

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           Y+IQ GFI RT RGR++    ++H+ I  P
Sbjct: 305 YLIQLGFIARTARGRIVTRGGYEHMKIAYP 334


>gi|187250916|ref|YP_001875398.1| Holliday junction resolvasome helicase subunit [Elusimicrobium
           minutum Pei191]
 gi|186971076|gb|ACC98061.1| Holliday junction resolvasome, helicase subunit [Elusimicrobium
           minutum Pei191]
          Length = 340

 Score =  337 bits (863), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 172/336 (51%), Positives = 225/336 (66%), Gaps = 3/336 (0%)

Query: 1   MMDREGLLSRNVSQEDAD--ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M     +L  N S E+ +   + LRP +L EF GQ     NL VF+ AAK R EALDH L
Sbjct: 1   MSSYNEVLDLNPSSEEKNGLDAALRPSSLREFVGQASLKENLHVFLTAAKKRGEALDHTL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTN-LEDRDVLFIDEIHRL 117
           F  PPGLGKTTLA ++A+E+GVN ++TSGPV+++ GDLAA+LT  + + D+LF+DEIHRL
Sbjct: 61  FYSPPGLGKTTLANILAKEMGVNIKTTSGPVLSRPGDLAAMLTTEISEGDILFVDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           +  VEE LYPAMEDF   +  G+G  + ++K+++ +FTL+ ATTR GLLT PL+DRFGI 
Sbjct: 121 NPAVEEALYPAMEDFNFFINTGKGAGSTTLKLSVPKFTLVGATTRSGLLTGPLRDRFGIV 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
             LNFYEI ++  I++R AKL  +         +A RSRGTPRIA RLLRR RDFA+V  
Sbjct: 181 FNLNFYEITEIADILERSAKLLNIEADRRGLEALAARSRGTPRIANRLLRRARDFAQVKG 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
              IT +IAD A+  L ID  G D +D R L  +   FGGGPVG+E ++  +SE  D + 
Sbjct: 241 DGVITCDIADIAMQSLDIDAEGLDTMDKRILEALIEKFGGGPVGVENLAIAVSESIDTLT 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           D+IEPY+I+ GFI RTPRGR+    A+ HLG   P 
Sbjct: 301 DVIEPYLIKAGFIARTPRGRVATKKAYDHLGRKSPE 336


>gi|114566955|ref|YP_754109.1| Holliday junction DNA helicase RuvB [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|122318041|sp|Q0AX16|RUVB_SYNWW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|114337890|gb|ABI68738.1| Holliday junction DNA helicase subunit RuvB [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
          Length = 344

 Score =  337 bits (863), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 170/328 (51%), Positives = 233/328 (71%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M+D   + S  + ++D + + +RP  L E+ GQ +   N++VFI AA+ R E+LDHVL  
Sbjct: 1   MLDERLISSHLLDEDDNNENSIRPGRLSEYIGQEKVKENVEVFITAARERKESLDHVLLS 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A E+G   R TSGP I + GDLAA+LTNLE  +VLFIDEIHRL+  
Sbjct: 61  GPPGLGKTTLASIIANEVGKPIRKTSGPAIERPGDLAAILTNLEPGEVLFIDEIHRLNRN 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEI+YPAMED+ +D+++G+GP+AR+++++L  FTLI ATTR GLL++PL+DRFGI  RL
Sbjct: 121 VEEIMYPAMEDYVIDIIIGKGPAARTLRLDLPPFTLIGATTRPGLLSSPLRDRFGISCRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           +FY   +L  I+ R A++  +++  E A EIA RSRGTPR+A RLLRRVRD+A V     
Sbjct: 181 DFYTPLELSEIILRAARILEISLDKEGATEIAGRSRGTPRVANRLLRRVRDYALVKGNGN 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I   +A  AL  L ID+ G D +D   L  I   F GGPVG++T++A +SE  D I D+ 
Sbjct: 241 IDFSLAKWALEMLEIDECGLDVMDRMILEAIIGKFSGGPVGLDTLAASVSEESDTISDVY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
           EPY+++ GFIQ+TPRGR+    A++HLG
Sbjct: 301 EPYLLKLGFIQKTPRGRMATEHAYRHLG 328


>gi|313895524|ref|ZP_07829080.1| Holliday junction DNA helicase RuvB [Selenomonas sp. oral taxon 137
           str. F0430]
 gi|312975650|gb|EFR41109.1| Holliday junction DNA helicase RuvB [Selenomonas sp. oral taxon 137
           str. F0430]
          Length = 344

 Score =  337 bits (863), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 171/330 (51%), Positives = 227/330 (68%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           + E L+S      D     LRPR L E+ GQ +   NL  FI+AA +R EALDHVL  GP
Sbjct: 5   NEEELVSFEEQSTDGWQYSLRPRRLSEYIGQDKIKDNLSKFIQAALSRGEALDHVLLYGP 64

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++A E+G NFR TS P I + GDLA+LLTNL+D DVLFIDEIHRLS  VE
Sbjct: 65  PGLGKTTLAGIIANEMGANFRQTSAPAIERQGDLASLLTNLQDHDVLFIDEIHRLSHHVE 124

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILY AMED  +D+++G+GPSARS++++L+ FTL+ ATT+ G L+ PL+DRFGI  RL +
Sbjct: 125 EILYSAMEDHAIDIIIGKGPSARSIRLDLAPFTLVGATTKTGALSAPLRDRFGIQARLEY 184

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  E L  I++R A++  + +  E A EIA RSRGTPR+A R+L+RVRD A+VA    I+
Sbjct: 185 YTPEALLLIIERTAEILSVTIEHEGALEIARRSRGTPRVANRILKRVRDIAQVAGEDIIS 244

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            +   AAL  L +D+ G +  D   L ++   F G PVG++T++A LSE  + IED+ EP
Sbjct: 245 HKTTLAALTALEVDEQGLENKDRTMLEVMITKFSGRPVGLKTLAAALSEMPETIEDVYEP 304

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           Y+IQ GFI RT RGR++    ++H+ I  P
Sbjct: 305 YLIQLGFIARTARGRIVTRGGYEHMKIAYP 334


>gi|19704552|ref|NP_604114.1| Holliday junction DNA helicase RuvB [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|296328431|ref|ZP_06870957.1| crossover junction ATP-dependent DNA helicase RuvB [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
 gi|22001977|sp|Q8RE97|RUVB_FUSNN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|19714838|gb|AAL95413.1| Holliday junction DNA helicase ruvB [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|296154505|gb|EFG95297.1| crossover junction ATP-dependent DNA helicase RuvB [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
          Length = 332

 Score =  337 bits (863), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 158/306 (51%), Positives = 221/306 (72%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP++ +E+ GQ      + + I+AA+ R   +DH+L  GPPGLGKTTLA V+A E+  N
Sbjct: 20  LRPKSFDEYIGQENLKEKMSISIKAAQKRNMVVDHILLYGPPGLGKTTLAGVIANEMKAN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGP++ KAGDLAA+LT+LE+ D+LFIDEIHRL+  VEEILYPAMED +LD+++G+G
Sbjct: 80  LKITSGPILEKAGDLAAILTSLEENDILFIDEIHRLNSTVEEILYPAMEDGELDIIIGKG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSA+S++I L  FTLI ATTR GLL+ PL+DRFG+  ++ +Y   ++K+I+ RGAK+ G+
Sbjct: 140 PSAKSIRIELPPFTLIGATTRAGLLSAPLRDRFGVSHKMEYYNENEIKSIIIRGAKILGV 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + ++ A EI+ RSRGTPRIA RLL+RVRD+ E+    TI +  A  AL  L +D  G D
Sbjct: 200 KINEDGAIEISKRSRGTPRIANRLLKRVRDYCEIKGNGTIDKLSAKNALDMLGVDSNGLD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            LD   +  I  N+ GGPVGIET+S  L E R  +E++ EPY+++ GF++RT RGR++  
Sbjct: 260 DLDRNIINSIIENYDGGPVGIETLSLLLGEDRRTLEEVYEPYLVKIGFLKRTNRGRVVTS 319

Query: 322 IAWQHL 327
            A+QH 
Sbjct: 320 KAYQHF 325


>gi|148243842|ref|YP_001220081.1| Holliday junction DNA helicase B [Acidiphilium cryptum JF-5]
 gi|146400405|gb|ABQ28939.1| Holliday junction DNA helicase subunit RuvB [Acidiphilium cryptum
           JF-5]
          Length = 312

 Score =  337 bits (863), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 171/304 (56%), Positives = 213/304 (70%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L +F GQ +   NL  FI AA  R  +LDHVL  GPPGLGKTT+AQ++A E+  N
Sbjct: 5   LRPQGLADFVGQADTMRNLATFIRAALIRGVSLDHVLLNGPPGLGKTTIAQIIAHEMNCN 64

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            ++  GP + +A DLAA+LT ++  +VLFIDEIHR+     EILY AMEDF LD+++GEG
Sbjct: 65  LKTIIGPAVQRAADLAAVLTTMQPNEVLFIDEIHRVQPAAAEILYGAMEDFTLDILIGEG 124

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P ARSV+I+L RFTLI ATTR G L  PL+DRFGI + L FY  EDL  IV R A + G+
Sbjct: 125 PQARSVRIDLPRFTLIGATTRSGSLPAPLRDRFGIHLGLEFYSPEDLVRIVTRSAGMLGI 184

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  E A EIA RSRGTPRIA RLLRRV DFA VA    IT  IAD AL  LA+D+ G D
Sbjct: 185 GMMPEGAMEIARRSRGTPRIANRLLRRVHDFAVVAGVVAITDTIADMALSSLAVDRRGLD 244

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           +LD RY+  I    GGGPVGI+T++ GL E R+ IED+IEP+++  G I RT RGR+L P
Sbjct: 245 KLDRRYIDWIDTVHGGGPVGIDTLATGLGEARETIEDVIEPFLVASGIITRTSRGRVLTP 304

Query: 322 IAWQ 325
            A++
Sbjct: 305 KAYE 308


>gi|221231160|ref|YP_002510312.1| Holliday junction DNA helicase, subunit B [Streptococcus pneumoniae
           ATCC 700669]
 gi|220673620|emb|CAR68107.1| Holliday junction DNA helicase, subunit B [Streptococcus pneumoniae
           ATCC 700669]
          Length = 323

 Score =  337 bits (863), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 168/313 (53%), Positives = 217/313 (69%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E+ GQ +    L++FIEAAK R EALDHVL  GPPGLGKTT+A V+A ELGVN
Sbjct: 11  LRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANELGVN 70

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGPVI KAGDL A+L  LE  DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G
Sbjct: 71  LKQTSGPVIEKAGDLVAILNELEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAG 130

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
             +RSV + L  FTLI ATTR G+L+NPL+ RFGI   + +Y    L  IV+R A +  +
Sbjct: 131 EGSRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYAHAGLTEIVERTADIFEM 190

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T EAA E+A+RSRGTPRIA RLL+RVRDFA++     I   I D AL  L +D  G D
Sbjct: 191 EITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGNGVIDDIITDKALTMLDVDHEGLD 250

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   + GGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GFI RT  GR+   
Sbjct: 251 YVDQKILRTMIEMYSGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRSGRVATA 310

Query: 322 IAWQHLGIDIPHR 334
            A++HLG +   +
Sbjct: 311 KAYEHLGYEYSEK 323


>gi|83815259|ref|YP_445272.1| Holliday junction DNA helicase B [Salinibacter ruber DSM 13855]
 gi|97190287|sp|Q2S3F9|RUVB_SALRD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|83756653|gb|ABC44766.1| Holliday junction DNA helicase RuvB [Salinibacter ruber DSM 13855]
          Length = 344

 Score =  337 bits (863), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 165/330 (50%), Positives = 228/330 (69%), Gaps = 1/330 (0%)

Query: 4   REGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           R   L     + D D+  LLRP++L+EF GQ +   NL VF++AA  R E LDHVL  GP
Sbjct: 5   RSDALKAEADRSDNDVEKLLRPQSLDEFVGQEKIKENLNVFMKAALQRGETLDHVLLSGP 64

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++A E+G   R++SGPV+ K  D+A +LTNLE+ D+LFIDEIHRLS +VE
Sbjct: 65  PGLGKTTLAHIIANEMGARIRTSSGPVLEKPADIAGVLTNLEEGDLLFIDEIHRLSSVVE 124

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E LY AMED+++D+++ +GP+AR+V+I+L  FT++ ATTR GLLT PL+ RFGI  R ++
Sbjct: 125 EYLYSAMEDYRIDIVIDQGPNARTVQIDLPPFTMVGATTRKGLLTAPLRARFGIDFRYDY 184

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  + L+ I QR A++  +  T + A EIA RSRGTPR+A RLLRR RDFAEV     IT
Sbjct: 185 YTADLLQEITQRSARILDVETTPDGAYEIARRSRGTPRVANRLLRRTRDFAEVEGDGEIT 244

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           + IAD AL  L +D+ G D +D R L  +  NF GGP G++ ++  + E    +E++ EP
Sbjct: 245 KAIADRALNALDVDEEGLDDMDARILLTLIDNFDGGPTGLKNLAVSVGEESGTLEEVYEP 304

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           Y+IQ+GF++RTP+GR+ +  A+ H     P
Sbjct: 305 YLIQEGFMERTPQGRVALQRAYDHFDRSSP 334


>gi|154148614|ref|YP_001406316.1| Holliday junction DNA helicase B [Campylobacter hominis ATCC
           BAA-381]
 gi|166231478|sp|A7I1C5|RUVB_CAMHC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|153804623|gb|ABS51630.1| holliday junction DNA helicase RuvB [Campylobacter hominis ATCC
           BAA-381]
          Length = 340

 Score =  337 bits (863), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 169/328 (51%), Positives = 235/328 (71%), Gaps = 2/328 (0%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MDR   + +   +E+ + SL RP + +++ GQ +   NLKVFI AAK RAE LDHVLF G
Sbjct: 1   MDRIVEIEKADFEEEIETSL-RPTSFDDYIGQSKIKENLKVFIAAAKKRAECLDHVLFYG 59

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+GV+ + T+ P+I K+GDLAA+LTNLE+ DVLFIDEIHRLS  +
Sbjct: 60  PPGLGKTTLAHIIANEMGVSIKITAAPMIEKSGDLAAILTNLEENDVLFIDEIHRLSSAI 119

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMEDF+LD+++G GP+A+++KI++ +FTLI ATTR G+++ PL+DRFG+  RLN
Sbjct: 120 EEVLYSAMEDFRLDIIIGSGPAAQTIKIDIPKFTLIGATTRAGMISAPLRDRFGMQFRLN 179

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY  ++L  IVQ  A          AA +IA RSRGTPRIA RLL+R+RDFAEV +   I
Sbjct: 180 FYTSDELAKIVQIAAVKLNKECEKNAALQIAKRSRGTPRIALRLLKRIRDFAEVNNENII 239

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
               A ++L  L ++ +GFD++DL+YL ++        +G+ TISA LSE    IED+IE
Sbjct: 240 NENRAKSSLDALGVNDLGFDEMDLKYLEILGST-KNRALGLSTISAALSEDEGTIEDVIE 298

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           PY++  G+I+RT +GR++   + + LGI
Sbjct: 299 PYLLANGYIERTAKGRIITAKSCEILGI 326


>gi|311745415|ref|ZP_07719200.1| holliday junction DNA helicase RuvB [Algoriphagus sp. PR1]
 gi|126577964|gb|EAZ82184.1| holliday junction DNA helicase RuvB [Algoriphagus sp. PR1]
          Length = 344

 Score =  337 bits (863), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 177/327 (54%), Positives = 228/327 (69%), Gaps = 4/327 (1%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           D E L S++   E A    LRP + E+FTGQ +   NL+VF+ AAK R+E LDHVL  GP
Sbjct: 9   DDEHLSSKDKEYEKA----LRPLSFEDFTGQFKIIENLRVFVLAAKKRSEPLDHVLLHGP 64

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTL+ ++A EL    + TSGPV+ K  DLA LLTNLE+ DVLFIDEIHRL+ IVE
Sbjct: 65  PGLGKTTLSHIIANELQSGIKITSGPVLDKPSDLAGLLTNLEEGDVLFIDEIHRLNPIVE 124

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E LY AMEDF++D+M+  GP+ARSV+I+LS FTLI ATTR GLLT+PL+ RFGI  RL +
Sbjct: 125 EYLYSAMEDFRIDIMLDSGPNARSVQISLSPFTLIGATTRSGLLTSPLRARFGINSRLEY 184

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y+ + L  IV R A +    + + AA EIA RSRGTPRI+  LLRR RDFAEV    T+T
Sbjct: 185 YDAKLLTDIVCRSAGILQTPIEEVAAYEIARRSRGTPRISNMLLRRTRDFAEVKGDGTVT 244

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             IA  AL  L +D+ G D++D R L  I   F GGPVG+ TI+    E  + IE++ EP
Sbjct: 245 LAIAKMALDALDVDEHGLDEMDNRILLTIIDKFKGGPVGLSTIATACGEEAETIEEVYEP 304

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           ++IQ+G+++RT RGR+   +A++HL I
Sbjct: 305 FLIQEGYLKRTARGRMATEMAYKHLNI 331


>gi|225869523|ref|YP_002745470.1| Holliday junction DNA helicase, subunit B [Streptococcus equi
           subsp. equi 4047]
 gi|254767441|sp|C0M7R2|RUVB_STRE4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|225698927|emb|CAW91941.1| Holliday junction DNA helicase, subunit B [Streptococcus equi
           subsp. equi 4047]
          Length = 335

 Score =  336 bits (862), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 166/307 (54%), Positives = 217/307 (70%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E+ GQ      L +FIEAAK R E+LDHVL  G PGLGKTT+A V+A ELGV+
Sbjct: 20  LRPQYLREYIGQDRVKDQLMIFIEAAKRREESLDHVLLFGSPGLGKTTMAFVIANELGVH 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGP I KAGDL A+L +LE  DVLFIDEIHR+ + VEEILY AMEDF +D+M+G G
Sbjct: 80  LKQTSGPAIEKAGDLVAILNDLEPGDVLFIDEIHRMPMAVEEILYSAMEDFYIDIMIGAG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            ++RSV + L  FTLI ATTR G+L+NPL+ RFGI   + +Y+  DL  IV+R A +  +
Sbjct: 140 DTSRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYQTADLTEIVERTADIFDM 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  EAA E+A RSRGTPRIA RLL+RVRD+A++     IT +I D AL  L +D+ G D
Sbjct: 200 TIKHEAAYELARRSRGTPRIANRLLKRVRDYAQIMGDGMITTQITDKALTMLDVDQEGLD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   + GGPVG+ T+S  ++E RD +ED+ EPY+IQ+GFI RT  GR++  
Sbjct: 260 YVDQKILRTMIEVYQGGPVGLGTLSVNIAEERDTVEDMYEPYLIQKGFIMRTRTGRVVTE 319

Query: 322 IAWQHLG 328
            A+QHLG
Sbjct: 320 KAYQHLG 326


>gi|242373941|ref|ZP_04819515.1| Holliday junction DNA helicase B [Staphylococcus epidermidis
           M23864:W1]
 gi|242348295|gb|EES39897.1| Holliday junction DNA helicase B [Staphylococcus epidermidis
           M23864:W1]
          Length = 339

 Score =  336 bits (862), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 165/327 (50%), Positives = 228/327 (69%), Gaps = 2/327 (0%)

Query: 2   MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD+  ++ +    ED+   L LRP  L+++ GQ    SNL+VFI+AAK R E LDHVL  
Sbjct: 6   MDKR-MVDQEFHDEDSAFELSLRPTKLKQYIGQSSIKSNLEVFIKAAKLREEPLDHVLLF 64

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTL+ ++A E+ VN R+ SGP + + GDLAA+L+ L+  DVLFIDEIHRLS +
Sbjct: 65  GPPGLGKTTLSNIIANEMEVNIRTISGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSV 124

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDF LD+++G+G  ARS++I+L  FTL+ ATTR G LT PL+DRFG+ +RL
Sbjct: 125 VEEVLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATTRAGSLTGPLRDRFGVHLRL 184

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y   +LK I+ R A++    + +E+A E+A RSRGTPR+A RLL+RVRDF +V     
Sbjct: 185 EYYNENELKEIITRTAEVLDTGIDEESALELARRSRGTPRVANRLLKRVRDFQQVNEDDQ 244

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I  E    AL  L +D+ G D +D + +  I   + GGPVG++TI+  + E R  IED+ 
Sbjct: 245 IYIETTKRALQLLQVDQEGLDYIDHKMMNCIINQYNGGPVGLDTIAVSIGEERITIEDVY 304

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHL 327
           EP++IQ+GF++RTPRGR     A++H 
Sbjct: 305 EPFLIQKGFLERTPRGRKATAFAYEHF 331


>gi|327439541|dbj|BAK15906.1| holliday junction resolvasome, helicase subunit [Solibacillus
           silvestris StLB046]
          Length = 334

 Score =  336 bits (862), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 172/329 (52%), Positives = 229/329 (69%), Gaps = 3/329 (0%)

Query: 1   MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M DR  +LS   +  +    L LRP+ L ++ GQ +   NLK+FIEAAK R E+LDHVL 
Sbjct: 1   MSDR--VLSGEATDAEQQFELSLRPQRLAQYIGQDKVKENLKIFIEAAKLRQESLDHVLL 58

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA V+A E+ VN + TSGP I + GDLAA+L++LE  DVLFIDEIHRL  
Sbjct: 59  YGPPGLGKTTLAIVIANEMDVNVKMTSGPAIERPGDLAAILSSLEAGDVLFIDEIHRLPR 118

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            +EE+LY AMEDF LD++VG+GP ARS+++ L  FTL+ ATTR G L+ PL+DRFG+  R
Sbjct: 119 AIEEVLYSAMEDFCLDIVVGKGPEARSIRLELPPFTLVGATTRAGALSAPLRDRFGVLSR 178

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y+ + L  IV R  +L G+A+   AA EIA RSRGTPRIA RLL+RVRD+A+V    
Sbjct: 179 LEYYDEQSLAEIVIRSGELFGVALDKHAAFEIARRSRGTPRIANRLLKRVRDYAQVLADG 238

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            ++  +A+ AL  L +D  G D +D + +  +   FGGGPVG++ ++A + E R  IED+
Sbjct: 239 IVSTSLAEQALELLQVDPRGLDHIDHKLMQSMIERFGGGPVGLDALAASIGEERITIEDV 298

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
            EPY++Q GFIQRTPRGR+   + + H G
Sbjct: 299 YEPYLLQIGFIQRTPRGRIATNLCYDHFG 327


>gi|269792532|ref|YP_003317436.1| Holliday junction DNA helicase RuvB [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100167|gb|ACZ19154.1| Holliday junction DNA helicase RuvB [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 347

 Score =  336 bits (862), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 169/332 (50%), Positives = 231/332 (69%), Gaps = 3/332 (0%)

Query: 1   MMDREGLLSRNVSQEDADI---SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M   E L+ R   ++D D+     LRP +L+ F GQ      L++FI A+K R E LDH 
Sbjct: 1   MGSDEKLMHRLREEDDGDVVAGRALRPESLDSFVGQEALKEKLRIFIAASKGRGEPLDHC 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           LF GPPGLGKTT+A ++ARE+G + R T+GP I +AGDLAA+L+NL  +DVLFIDEIHRL
Sbjct: 61  LFYGPPGLGKTTMANIIAREMGGDLRVTTGPAIERAGDLAAILSNLRPKDVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             +VEE+LY AMEDF L++++G+GP ARS+K+ L  FTL+ ATTR+GLLT+PL+ RFGI 
Sbjct: 121 PSVVEEVLYSAMEDFCLNIVIGKGPMARSIKLQLPPFTLVGATTRLGLLTSPLRARFGIV 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            ++  Y  E+L  IV+RGA++ G+++ DEA+ EI  RSRGTPR+A RLLRRVRD A V+ 
Sbjct: 181 EQMELYTPEELTAIVRRGAEILGMSIEDEASYEIGRRSRGTPRVALRLLRRVRDVASVSG 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
              I  + A  AL  L +DK G D  D ++L  +   F GGPVG+ T++A L+E    IE
Sbjct: 241 VAVIDIKTAKGALDMLGVDKEGLDDGDRKFLRALVELFDGGPVGLSTLAAALNEDPQTIE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           D+ EP++IQ+G ++RTPRGR      + +LG+
Sbjct: 301 DIYEPFLIQKGLLERTPRGRKATRGTYSYLGV 332


>gi|81427981|ref|YP_394980.1| Holliday junction DNA helicase B [Lactobacillus sakei subsp. sakei
           23K]
 gi|97190125|sp|Q38YQ9|RUVB_LACSS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|78609622|emb|CAI54668.1| Holliday junction DNA helicase RuvB [Lactobacillus sakei subsp.
           sakei 23K]
          Length = 335

 Score =  336 bits (861), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 172/331 (51%), Positives = 226/331 (68%), Gaps = 6/331 (1%)

Query: 10  RNVSQEDADIS------LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           R VS E+ D +       LRP+ L ++ GQ    + L V+IEAAK R E+LDHVL  GPP
Sbjct: 5   RIVSAENDDFAEASIEKTLRPQVLAQYIGQDRVKNELAVYIEAAKKREESLDHVLLYGPP 64

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA V+A EL V  R+TSGP I + GDL ALL  L+  DVLFIDEIHRL  +VEE
Sbjct: 65  GLGKTTLAMVIANELQVQIRTTSGPAIERPGDLVALLNELQPGDVLFIDEIHRLPKMVEE 124

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LY AMEDF +D++VG+GP+A  V   L  FTLI ATTR GLL+ PL+DRFGI   + +Y
Sbjct: 125 LLYSAMEDFYIDIVVGQGPTAHPVHFPLPPFTLIGATTRAGLLSAPLRDRFGIVEHMAYY 184

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
              DL  IVQR A +  +++  + A EIA RSRGTPRIA RLL+R RD+A+VA   TI +
Sbjct: 185 TEADLMDIVQRSAGVFNMSIVPDGALEIARRSRGTPRIANRLLKRTRDYAQVADQNTIDQ 244

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
            IAD AL +L +D  G D +D + L M+   + GGPVG++TI+A + E  + IE++ EPY
Sbjct: 245 AIADHALSQLQVDIRGLDGVDRKILQMMIDYYQGGPVGLKTIAANIGEENETIEEVYEPY 304

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           ++Q GF++RT RGR++ P  + HLG+  P +
Sbjct: 305 LLQIGFLKRTQRGRMVTPAGYAHLGMPYPEK 335


>gi|104774419|ref|YP_619399.1| Holliday junction DNA helicase RuvB [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|116514517|ref|YP_813423.1| Holliday junction DNA helicase RuvB [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
 gi|122274751|sp|Q048Y7|RUVB_LACDB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|123378384|sp|Q1G941|RUVB_LACDA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|103423500|emb|CAI98402.1| Holliday junction DNA helicase RuvB [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|116093832|gb|ABJ58985.1| Holliday junction DNA helicase subunit RuvB [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
 gi|325126229|gb|ADY85559.1| Helicase Holliday junction [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
 gi|325685739|gb|EGD27817.1| crossover junction ATP-dependent DNA helicase RuvB [Lactobacillus
           delbrueckii subsp. lactis DSM 20072]
          Length = 336

 Score =  336 bits (861), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 165/311 (53%), Positives = 223/311 (71%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L ++ GQ     +++V+I+AA+ R EALDHVL  GPPGLGKTTLA V+A ELGVN
Sbjct: 22  LRPQLLSQYIGQGHVKKDMEVYIQAARQRDEALDHVLLYGPPGLGKTTLAFVIANELGVN 81

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            +STSGP I +AGDL ALLT+LE  DVLFIDEIHRL+  VEE+LY AMEDF +D++VGEG
Sbjct: 82  LKSTSGPAIERAGDLVALLTDLEPGDVLFIDEIHRLAKPVEEVLYSAMEDFYIDIVVGEG 141

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            +  ++ + L  FTLI ATT  G L+ PL+DRFGI   + +Y++EDL+ I+ R +++   
Sbjct: 142 QTTHAIHLPLPPFTLIGATTLAGQLSAPLRDRFGIVEHMQYYQVEDLEKIILRSSEVFHT 201

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            ++ +AA E+A RSRGTPR+A RLL+RVRDFAEV   K I+ E    AL +L +D  G D
Sbjct: 202 KISPQAAHELARRSRGTPRVANRLLKRVRDFAEVKGEKEISLETTAMALKQLQVDSAGLD 261

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           Q D + L  +  ++GGGPVGI T+++ + E R+ IE L EPY++Q GFI  TPRGR++  
Sbjct: 262 QTDRKLLRTMILSYGGGPVGIRTLASNIGEDRETIESLYEPYLLQNGFIVMTPRGRVVTQ 321

Query: 322 IAWQHLGIDIP 332
            A+Q L + +P
Sbjct: 322 KAYQQLNLPLP 332


>gi|197121427|ref|YP_002133378.1| Holliday junction DNA helicase RuvB [Anaeromyxobacter sp. K]
 gi|220916124|ref|YP_002491428.1| Holliday junction DNA helicase RuvB [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|238689870|sp|B4UFY1|RUVB_ANASK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|254767404|sp|B8JF05|RUVB_ANAD2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|196171276|gb|ACG72249.1| Holliday junction DNA helicase RuvB [Anaeromyxobacter sp. K]
 gi|219953978|gb|ACL64362.1| Holliday junction DNA helicase RuvB [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 342

 Score =  336 bits (861), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 164/311 (52%), Positives = 220/311 (70%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP T +++ GQV+   N+KV+  AA+ R E+LDHVL  GPPGLGKT+LA ++ARELGV 
Sbjct: 24  LRPATFDDYVGQVKIVDNVKVYAAAARQRGESLDHVLLSGPPGLGKTSLAHILARELGVT 83

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
              TSGP + K GDLA LLT L  RD+LFIDEIHRLS  VEE LYPAMED++ D+++G G
Sbjct: 84  LHVTSGPALVKKGDLAGLLTALAPRDILFIDEIHRLSPAVEEALYPAMEDYRFDVVLGAG 143

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
             A+++++ L RFTL+ ATTR GLL +PL+DRF I  RL +Y   +LK I  R A+  GL
Sbjct: 144 LGAQTMEMKLERFTLVGATTRTGLLASPLRDRFPIQERLEYYGPAELKEIAVRAARKLGL 203

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            V ++ A E+A R+RGTPRIA RLL+R RDFA+V     +TRE+ D  L RL +D  G D
Sbjct: 204 PVDEDGAEELARRARGTPRIAIRLLQRARDFAQVEGDGRLTREVVDRTLRRLEVDARGLD 263

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D R L  +   FGGGPVGI+ ++A + E    +ED+ EP+++++G++ RTPRGR+ +P
Sbjct: 264 AMDRRILAAVIDTFGGGPVGIDAVAAAVGEESGTLEDVYEPFLVREGYLARTPRGRVALP 323

Query: 322 IAWQHLGIDIP 332
            A+ HLG D P
Sbjct: 324 AAYAHLGRDRP 334


>gi|320333569|ref|YP_004170280.1| Holliday junction ATP-dependent DNA helicase ruvB [Deinococcus
           maricopensis DSM 21211]
 gi|319754858|gb|ADV66615.1| Holliday junction ATP-dependent DNA helicase ruvB [Deinococcus
           maricopensis DSM 21211]
          Length = 334

 Score =  336 bits (861), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 168/310 (54%), Positives = 223/310 (71%), Gaps = 1/310 (0%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+ LE++ GQ      L V+++AAKAR EALDH L  GPPGLGKTTL+ ++A ELGVN 
Sbjct: 13  RPKRLEDYVGQARLKEKLSVYLQAAKARREALDHTLLFGPPGLGKTTLSHIIAYELGVNI 72

Query: 83  RSTSGPVIAKAGDLAALLTN-LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           + TSGP I K GDLAA+LTN LE+ DVLFIDEIHRL  + EE LYPAMEDF+LD+++G+G
Sbjct: 73  KVTSGPAIEKPGDLAAILTNSLEEGDVLFIDEIHRLGRVAEEHLYPAMEDFKLDIVLGQG 132

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+AR++++ L RFTL+ ATTR GL+T P++ RFGI   L +Y  E++   + R A    L
Sbjct: 133 PAARTIELPLPRFTLVGATTRPGLITAPMRSRFGIIEHLEYYTPEEIALGLMRDATTLDL 192

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  +AA E+  RSRGT RIA RLLRRVRD+AEVA  + IT+E A+ AL +L +D  G D
Sbjct: 193 GLELDAAMEVGARSRGTMRIAKRLLRRVRDYAEVAGERRITKERAEDALDKLGLDTAGLD 252

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             D +YL  +   F GGPVG++T++  +SE    +ED+ EPY+IQ GFI+RTPRGR+   
Sbjct: 253 DRDKKYLETLIHRFDGGPVGVDTLATAISEDALTLEDVYEPYLIQLGFIKRTPRGRVATA 312

Query: 322 IAWQHLGIDI 331
            A+ HLG+D+
Sbjct: 313 AAYDHLGLDV 322


>gi|153874903|ref|ZP_02002938.1| Holliday junction ATP-dependent DNA helicase ruvB [Beggiatoa sp.
           PS]
 gi|152068634|gb|EDN67063.1| Holliday junction ATP-dependent DNA helicase ruvB [Beggiatoa sp.
           PS]
          Length = 289

 Score =  336 bits (861), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 166/272 (61%), Positives = 205/272 (75%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           +  GPPGLGKTTL+ +VA E+ VN R TSGPV+ +AGDLAALLTNLE RDVLFIDEIHRL
Sbjct: 1   MIFGPPGLGKTTLSHIVANEMEVNIRQTSGPVLERAGDLAALLTNLEARDVLFIDEIHRL 60

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           S +VEE+LYPAMEDFQLD+M+GEGPSARS+K++L  FTLI ATTR GLLT+PL+DRFGI 
Sbjct: 61  SPVVEEMLYPAMEDFQLDIMIGEGPSARSIKLDLPPFTLIGATTRAGLLTSPLRDRFGIT 120

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            RL FY  EDL  I+ R A +  +++  E A E+A RSRGTPRIA RLLRRVRD+A+V  
Sbjct: 121 QRLEFYSHEDLAKIITRSASILNVSIDTEGAMELACRSRGTPRIANRLLRRVRDYAQVRA 180

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
              IT EIA  AL  L +D  G D +D + L  I   F GGPVG+ET++A + E R  IE
Sbjct: 181 DGQITCEIAKKALDLLNVDTYGLDIMDRKLLLAIMEKFDGGPVGVETLAAIVGEERGTIE 240

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           ++IEP+++QQG + RTPRGR+   +AWQH  +
Sbjct: 241 EVIEPFLLQQGLLMRTPRGRVATRLAWQHFNL 272


>gi|262041977|ref|ZP_06015159.1| Holliday junction DNA helicase RuvB [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259040675|gb|EEW41764.1| Holliday junction DNA helicase RuvB [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 304

 Score =  336 bits (861), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 172/285 (60%), Positives = 215/285 (75%), Gaps = 1/285 (0%)

Query: 1   MMDREGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S + S  E+A    +RP+ L E+ GQ +  S +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRLVSADSSGFEEAADRAIRPKLLAEYVGQPQVRSQMEIFIQAAKLRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+G N R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGGNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY+I DL+ IV R A+  GL ++DE A E+A RSRGTPRIA RLLRRVRDFAEV H  
Sbjct: 181 LEFYQIPDLQHIVSRSARHMGLEMSDEGALEVARRSRGTPRIANRLLRRVRDFAEVRHDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIET 284
           TI+ +IA  AL  L +D  GFD +D + L  +   F GGPVG  T
Sbjct: 241 TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGWTT 285


>gi|224418229|ref|ZP_03656235.1| Holliday junction DNA helicase RuvB [Helicobacter canadensis MIT
           98-5491]
 gi|313141762|ref|ZP_07803955.1| holliday junction DNA helicase [Helicobacter canadensis MIT
           98-5491]
 gi|313130793|gb|EFR48410.1| holliday junction DNA helicase [Helicobacter canadensis MIT
           98-5491]
          Length = 333

 Score =  336 bits (861), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 164/297 (55%), Positives = 222/297 (74%), Gaps = 1/297 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP   +++ GQ +   NLKVFIEAAK R + LDH+L  GPPGLGKTTLA +++ E+   
Sbjct: 20  LRPSDWDDYIGQEKLKRNLKVFIEAAKKRGDVLDHLLLFGPPGLGKTTLAHIISGEMNAP 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + T+ P+I KAGDLAA+LTNL + ++LFIDEIHRLS  +EEILYPAMEDF+LD+++G G
Sbjct: 80  IKVTAAPMIEKAGDLAAILTNLSEGEILFIDEIHRLSPAIEEILYPAMEDFRLDIIIGSG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+A++VKI+L RFTLI ATTR G+++NPL+DRFG+  R+ FYE E+L  IVQ  +     
Sbjct: 140 PAAQTVKIDLPRFTLIGATTRAGMISNPLRDRFGMQFRMQFYEKEELARIVQIASIKLQK 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
             ++E A EIA RSRGTPRIA RLL+RVRDFAEVA  + IT+E    AL  L +++ GFD
Sbjct: 200 ECSNEGALEIAKRSRGTPRIALRLLKRVRDFAEVAEEEIITKERTQYALNELGVNEYGFD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRL 318
           +LDLR+L +I  +  G P+G+ T++A +SE    +ED+IEPY++  GF++RT RGR+
Sbjct: 260 ELDLRFLKIICES-RGRPIGLSTLAAAMSEDEGTVEDVIEPYLLVNGFLERTARGRI 315


>gi|253827554|ref|ZP_04870439.1| Holliday junction DNA helicase RuvB [Helicobacter canadensis MIT
           98-5491]
 gi|253510960|gb|EES89619.1| Holliday junction DNA helicase RuvB [Helicobacter canadensis MIT
           98-5491]
          Length = 324

 Score =  335 bits (860), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 164/297 (55%), Positives = 222/297 (74%), Gaps = 1/297 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP   +++ GQ +   NLKVFIEAAK R + LDH+L  GPPGLGKTTLA +++ E+   
Sbjct: 11  LRPSDWDDYIGQEKLKRNLKVFIEAAKKRGDVLDHLLLFGPPGLGKTTLAHIISGEMNAP 70

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + T+ P+I KAGDLAA+LTNL + ++LFIDEIHRLS  +EEILYPAMEDF+LD+++G G
Sbjct: 71  IKVTAAPMIEKAGDLAAILTNLSEGEILFIDEIHRLSPAIEEILYPAMEDFRLDIIIGSG 130

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+A++VKI+L RFTLI ATTR G+++NPL+DRFG+  R+ FYE E+L  IVQ  +     
Sbjct: 131 PAAQTVKIDLPRFTLIGATTRAGMISNPLRDRFGMQFRMQFYEKEELARIVQIASIKLQK 190

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
             ++E A EIA RSRGTPRIA RLL+RVRDFAEVA  + IT+E    AL  L +++ GFD
Sbjct: 191 ECSNEGALEIAKRSRGTPRIALRLLKRVRDFAEVAEEEIITKERTQYALNELGVNEYGFD 250

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRL 318
           +LDLR+L +I  +  G P+G+ T++A +SE    +ED+IEPY++  GF++RT RGR+
Sbjct: 251 ELDLRFLKIICES-RGRPIGLSTLAAAMSEDEGTVEDVIEPYLLVNGFLERTARGRI 306


>gi|290579578|ref|YP_003483970.1| Holliday junction DNA helicase [Streptococcus mutans NN2025]
 gi|254996477|dbj|BAH87078.1| Holliday junction DNA helicase [Streptococcus mutans NN2025]
          Length = 331

 Score =  335 bits (860), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 166/307 (54%), Positives = 219/307 (71%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L+E+ GQ +    LK+FI+AAK R EALDHVL  GPPGLGKTT+A V+A ELGVN
Sbjct: 20  LRPQYLQEYIGQDKVKDQLKIFIKAAKQRDEALDHVLLFGPPGLGKTTMAFVIANELGVN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGP I KAGDL A+L +LE  DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G
Sbjct: 80  LKQTSGPAIEKAGDLVAVLNDLEPGDVLFIDEIHRLPMAVEEVLYSAMEDFYIDIMIGAG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            ++RSV ++L  FTLI ATTR G+L+NPL+ RFGI   + +Y   DL  IV+R A +  +
Sbjct: 140 ETSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYTDIDLTEIVERTADIFEM 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T +AA E+A RSRGTPRIA RLL+RVRD+A++     I  +I D AL  L +D  G D
Sbjct: 200 TITHQAALELARRSRGTPRIANRLLKRVRDYAQIMGDGLIDDKITDKALTMLDVDHEGLD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   + GGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GFI RT  GR+   
Sbjct: 260 YVDQKILKTMIEMYHGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIIRTRSGRVATA 319

Query: 322 IAWQHLG 328
            A++HLG
Sbjct: 320 KAYEHLG 326


>gi|118586982|ref|ZP_01544414.1| Holliday junction DNA helicase [Oenococcus oeni ATCC BAA-1163]
 gi|118432604|gb|EAV39338.1| Holliday junction DNA helicase [Oenococcus oeni ATCC BAA-1163]
          Length = 338

 Score =  335 bits (860), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 160/308 (51%), Positives = 214/308 (69%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E+ GQ E    L V+++AAK R EALDHVL  GPPGLGKTTLA V+A E+G  
Sbjct: 24  LRPKYLREYIGQKEIKDQLSVYLKAAKQRDEALDHVLLFGPPGLGKTTLAIVIANEMGAK 83

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            ++TSGP I K GDL ALL  L   D+LFIDEIHRL   VEE+LY AMEDF +D++VG+G
Sbjct: 84  IKTTSGPAIEKTGDLVALLNELTAGDILFIDEIHRLPKSVEEVLYSAMEDFYVDIVVGQG 143

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            +A ++   L  FTLI ATTR G+L+ PL+DRFGI   + FY + DLK I +R A++   
Sbjct: 144 ETAHAIHFPLPPFTLIGATTRAGMLSAPLRDRFGIVAHMQFYPVSDLKLIAKRTAEIFDT 203

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
           ++    A E+A+RSRGTPRI  RLL+RVRDFA+VA   TI  +I D+AL +L +D  G D
Sbjct: 204 SIAGSGAAELALRSRGTPRIVNRLLKRVRDFAQVAGKDTIDEQIVDSALNKLHVDARGLD 263

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           + DL+YL  +   + GGP G+  +++ + E  + +E+++EPY++Q GFIQRTPRGR    
Sbjct: 264 ETDLKYLNTLIHQYKGGPAGVNALASNIGEDSETVEEMVEPYLLQIGFIQRTPRGRQATQ 323

Query: 322 IAWQHLGI 329
            A++HL I
Sbjct: 324 AAYEHLQI 331


>gi|326803734|ref|YP_004321552.1| Holliday junction DNA helicase RuvB [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326650029|gb|AEA00212.1| Holliday junction DNA helicase RuvB [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 345

 Score =  335 bits (860), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 167/310 (53%), Positives = 222/310 (71%), Gaps = 1/310 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L+++ GQ E    L V+I AA+ R E+LDHVL  GPPGLGKTTLA V++ E+ VN
Sbjct: 23  LRPQLLKDYIGQEETKHELSVYIHAARQRTESLDHVLLYGPPGLGKTTLANVISNEMQVN 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            +++SGP I K GDL  LL  L   DVLFIDEIH L   VEE+LY AMEDF++D++VG+ 
Sbjct: 83  MQTSSGPAIEKTGDLLILLNELAPGDVLFIDEIHCLPRNVEEMLYSAMEDFRVDIIVGQE 142

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            SA +V+ +L  FTL+ ATTR G L+ PL+DRFGI   + +Y++++L+ IV+R +++  +
Sbjct: 143 SSAHAVQFDLPPFTLVGATTRAGSLSAPLRDRFGIIQHMRYYKVDELQEIVKRSSQIFEV 202

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR-EIADAALLRLAIDKMGF 260
            + DEA+ EIA+RSRGTPRIA RLL+RVRDFA++ +   I    I + AL  L IDK G 
Sbjct: 203 TIEDEASYEIALRSRGTPRIANRLLKRVRDFAQIYNTNAIIDLAITERALSILKIDKAGL 262

Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320
           D LD R L  I   + GGPVG+ TI+A LSE ++ IED+ EPY+IQ GF+QRTPRGR+  
Sbjct: 263 DDLDRRILETIIFYYQGGPVGLSTIAANLSEEKETIEDMYEPYLIQMGFLQRTPRGRMAT 322

Query: 321 PIAWQHLGID 330
             A+QHLGID
Sbjct: 323 AKAYQHLGID 332


>gi|312131534|ref|YP_003998874.1| holliday junction DNA helicase ruvb [Leadbetterella byssophila DSM
           17132]
 gi|311908080|gb|ADQ18521.1| Holliday junction DNA helicase RuvB [Leadbetterella byssophila DSM
           17132]
          Length = 339

 Score =  335 bits (860), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 170/313 (54%), Positives = 222/313 (70%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP + ++F GQ +   NLKVF+ AAK R+EALDHVL  GPPGLGKTTL+ ++A ELG N
Sbjct: 22  LRPLSFDDFAGQDKILENLKVFVLAAKMRSEALDHVLLHGPPGLGKTTLSHIIANELGAN 81

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGPV+ K  DLA LLT+LE  DVLFIDEIHRL+ IVEE LY AMED+++D+M+  G
Sbjct: 82  LKITSGPVLDKPSDLAGLLTSLEQNDVLFIDEIHRLNPIVEEYLYSAMEDYKIDIMLDSG 141

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARSV+I L+ FTLI ATTR GLLT+PL+ RFGI  RL +Y+ + L  I+ R A +   
Sbjct: 142 PNARSVQIGLNPFTLIGATTRSGLLTSPLRARFGINSRLEYYDAQLLSKILVRSASILQT 201

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + ++ A EIA RSRGTPRIA  LLRR RDFA+V     IT EIA  AL  L +D+ G D
Sbjct: 202 PIDEDGAYEIARRSRGTPRIANNLLRRTRDFAQVKGEGVITVEIAKMALAALDVDQDGLD 261

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           ++D R L+ I   F GGPVG+ TI+  + E  + IE++ EP++IQ+GF++RT RGR    
Sbjct: 262 EMDNRILSTIIEKFKGGPVGLGTIATAVGEEAETIEEVYEPFLIQEGFLKRTARGREATE 321

Query: 322 IAWQHLGIDIPHR 334
            A++HL +   +R
Sbjct: 322 KAYKHLNLVPKYR 334


>gi|254457038|ref|ZP_05070466.1| Holliday junction DNA helicase RuvB [Campylobacterales bacterium GD
           1]
 gi|207085830|gb|EDZ63114.1| Holliday junction DNA helicase RuvB [Campylobacterales bacterium GD
           1]
          Length = 337

 Score =  335 bits (859), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 173/325 (53%), Positives = 232/325 (71%), Gaps = 6/325 (1%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           +  +E A+++L RP    E+ GQ +   NL VFIEA+K R EALDHVLF GPPGLGKTTL
Sbjct: 11  STEEESAEVTL-RPDAWGEYIGQEQIKKNLGVFIEASKKRDEALDHVLFYGPPGLGKTTL 69

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           A ++A E+  N + T+ P+I K+GDLAA+LTNLE+ D+LFIDEIHRLS  VEEILY +ME
Sbjct: 70  ALIIANEMSANIKVTAAPMIEKSGDLAAILTNLEEGDILFIDEIHRLSPAVEEILYSSME 129

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL-K 189
           DF++D+++G GP+A++VKI+L RFTLI ATTR G+L+NPL+DRFG+  R+ FY  ++L K
Sbjct: 130 DFRIDIIIGSGPAAQTVKIDLPRFTLIGATTRAGMLSNPLRDRFGMSFRMQFYSSDELAK 189

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            IVQ   KL    +  EA+ EIA RSRGTPRIA RLLRRVRDFAEVA   +I       A
Sbjct: 190 IIVQASVKLDK-EIIHEASVEIAKRSRGTPRIALRLLRRVRDFAEVAEEMSINHSRTQYA 248

Query: 250 LLRLAIDKMGFDQLDLRYLT-MIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           L +L I+  GFD++D+R L  ++A N  G  +G+ TI+A LSE    +ED++EPY+I  G
Sbjct: 249 LDQLGINSHGFDEMDIRLLNLLVAAN--GRAMGLSTIAAALSEDEGTVEDVLEPYLIANG 306

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIPH 333
           +++RT +GR      ++ L I + H
Sbjct: 307 YLERTAKGRKATRSTYEVLNISMTH 331


>gi|116490642|ref|YP_810186.1| Holliday junction DNA helicase B [Oenococcus oeni PSU-1]
 gi|290890056|ref|ZP_06553139.1| hypothetical protein AWRIB429_0529 [Oenococcus oeni AWRIB429]
 gi|122277174|sp|Q04GA1|RUVB_OENOB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|116091367|gb|ABJ56521.1| Holliday junction DNA helicase subunit RuvB [Oenococcus oeni PSU-1]
 gi|290480247|gb|EFD88888.1| hypothetical protein AWRIB429_0529 [Oenococcus oeni AWRIB429]
          Length = 338

 Score =  335 bits (859), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 164/328 (50%), Positives = 227/328 (69%), Gaps = 2/328 (0%)

Query: 3   DREGLLSRNVSQE-DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           D++ L ++ ++ E D++++L RP+ L E+ GQ E    L V+++AAK R EALDHVL  G
Sbjct: 5   DQKILDAKPIADEIDSELTL-RPKYLREYIGQKEIKDQLSVYLKAAKQRDEALDHVLLFG 63

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA V+A E+G   ++TSGP I K GDL ALL  L   D+LFIDEIHRL   V
Sbjct: 64  PPGLGKTTLAIVIANEMGAKIKTTSGPAIEKTGDLVALLNELTAGDILFIDEIHRLPKSV 123

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMEDF +D++VG+G +A ++   L  FTLI ATTR G+L+ PL+DRFGI   + 
Sbjct: 124 EEVLYSAMEDFYVDIVVGQGETAHAIHFPLPPFTLIGATTRAGMLSAPLRDRFGIVAHMQ 183

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY + DLK I +R A++   ++    A E+A+RSRGTPRI  RLL+RVRDFA+VA   TI
Sbjct: 184 FYPVSDLKLIAKRTAEIFDTSIAGSGAAELALRSRGTPRIVNRLLKRVRDFAQVAGKDTI 243

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
             +I D AL +L +D  G D+ DL+YL  +   + GGP G+  +++ + E  + +E+++E
Sbjct: 244 DEQIVDNALNKLHVDARGLDETDLKYLNTLIHQYKGGPAGVNALASNIGEDSETVEEMVE 303

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           PY++Q GFIQRTPRGR     A++HL I
Sbjct: 304 PYLLQIGFIQRTPRGRQATQAAYEHLQI 331


>gi|320528323|ref|ZP_08029485.1| Holliday junction DNA helicase RuvB [Solobacterium moorei F0204]
 gi|320131237|gb|EFW23805.1| Holliday junction DNA helicase RuvB [Solobacterium moorei F0204]
          Length = 337

 Score =  335 bits (859), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 174/331 (52%), Positives = 231/331 (69%), Gaps = 3/331 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M + + LLS N    D + SL RP+TL+E+ GQ     N++++I+AA  R E+LDHVL  
Sbjct: 1   MEESDRLLSANAEMGDDEESL-RPQTLDEYIGQDTLKENIRIYIQAALQRNESLDHVLLY 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTL+ ++A E+    R  SGP I KAGDLAA+L+ LE  DVLFIDEIHRL   
Sbjct: 60  GPPGLGKTTLSFILANEMHSKVRVASGPSITKAGDLAAILSVLEPGDVLFIDEIHRLPKQ 119

Query: 121 VEEILYPAMEDFQLDLMVG--EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
           VEE+LYPAMEDF+LD+M+G   G   RSV+++L  FTL+ ATTR G L+ PL+DRFGI  
Sbjct: 120 VEEVLYPAMEDFELDIMIGGENGAGGRSVRLDLPPFTLVGATTRAGDLSAPLRDRFGIVA 179

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           +L +Y  E L +IV R A++    +   A  EIA RSRGTPRIA RLLRR+RDFA+V + 
Sbjct: 180 KLEYYNQEQLCSIVSRTARVLNAPIHTAAVDEIARRSRGTPRIANRLLRRIRDFAQVLND 239

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             I++EIA  AL RL +D +G D++D+RYL  I   F GGPVG+E+++  +SE    +ED
Sbjct: 240 GHISKEIAQTALDRLKVDSLGLDEVDIRYLRGIIERFHGGPVGLESLANAISEETTTLED 299

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           + EPY+IQ GF+ RT RGR++   A++HL I
Sbjct: 300 VYEPYLIQIGFVNRTSRGRVVTEKAYEHLHI 330


>gi|24378590|ref|NP_720545.1| Holliday junction DNA helicase RuvB [Streptococcus mutans UA159]
 gi|44888489|sp|Q8DWI4|RUVB_STRMU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|24376443|gb|AAN57851.1|AE014858_3 Holliday junction DNA helicase RuvB [Streptococcus mutans UA159]
          Length = 344

 Score =  335 bits (859), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 166/307 (54%), Positives = 219/307 (71%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L+E+ GQ +    LK+FI+AAK R EALDHVL  GPPGLGKTT+A V+A ELGVN
Sbjct: 33  LRPQYLQEYIGQDKVKDQLKIFIKAAKQRDEALDHVLLFGPPGLGKTTMAFVIANELGVN 92

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGP I KAGDL A+L +LE  DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G
Sbjct: 93  LKQTSGPAIEKAGDLVAVLNDLEPGDVLFIDEIHRLPMAVEEVLYSAMEDFYIDIMIGAG 152

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            ++RSV ++L  FTLI ATTR G+L+NPL+ RFGI   + +Y   DL  IV+R A +  +
Sbjct: 153 ETSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYTDIDLTEIVERTADIFEM 212

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T +AA E+A RSRGTPRIA RLL+RVRD+A++     I  +I D AL  L +D  G D
Sbjct: 213 TITHQAALELARRSRGTPRIANRLLKRVRDYAQIMGDGLIDDKITDKALTMLDVDHEGLD 272

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   + GGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GFI RT  GR+   
Sbjct: 273 YVDQKILKTMIEMYHGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIIRTRSGRVATA 332

Query: 322 IAWQHLG 328
            A++HLG
Sbjct: 333 KAYEHLG 339


>gi|257870593|ref|ZP_05650246.1| holliday junction DNA helicase RuvB [Enterococcus gallinarum EG2]
 gi|257804757|gb|EEV33579.1| holliday junction DNA helicase RuvB [Enterococcus gallinarum EG2]
          Length = 336

 Score =  335 bits (858), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 163/309 (52%), Positives = 216/309 (69%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L ++ GQ +    L ++I+AAK R EALDHVL  GPPGLGKTT+A V+A E+ VN
Sbjct: 22  LRPQFLAQYIGQNKVKEELSIYIQAAKNREEALDHVLLYGPPGLGKTTMAMVIANEMAVN 81

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            ++TSGP I K GDL A+L  L+  DVLFIDEIHRL  + EE+LY AMEDF +D+MVG+G
Sbjct: 82  IKTTSGPAIEKPGDLIAILNELQPGDVLFIDEIHRLPRVAEEMLYSAMEDFFVDIMVGQG 141

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            +A  V   L  FTL+ ATTR G+L+ PL+DRFGI   + +YE +DLK IV R A +   
Sbjct: 142 TTAHPVHFPLPPFTLVGATTRAGMLSAPLRDRFGIISHMEYYEDQDLKEIVLRSADIFQT 201

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + +E A EIA RSRGTPRIA RLL+RVRDFA+V     I R+IAD ALL L +D  G D
Sbjct: 202 EIVEEGAFEIARRSRGTPRIANRLLKRVRDFAQVQANGIIDRQIADKALLLLQVDHAGLD 261

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + +  +   +GGGPVG+ T+S  + E  + +ED+ EPY+IQ+GF++RTPRGR+   
Sbjct: 262 YVDQKLIRTMIELYGGGPVGLSTLSVNIGEETETVEDMYEPYLIQRGFLKRTPRGRIATT 321

Query: 322 IAWQHLGID 330
           +A+ H G +
Sbjct: 322 LAYTHFGYE 330


>gi|237750468|ref|ZP_04580948.1| holliday junction DNA helicase B [Helicobacter bilis ATCC 43879]
 gi|229373998|gb|EEO24389.1| holliday junction DNA helicase B [Helicobacter bilis ATCC 43879]
          Length = 347

 Score =  335 bits (858), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 158/303 (52%), Positives = 223/303 (73%), Gaps = 1/303 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP + E + GQ +   NL+VFIEA+K R E LDH+LF GPPGLGKTT++ ++A E+G N
Sbjct: 31  LRPISWENYIGQDKIKKNLQVFIEASKKRNECLDHILFFGPPGLGKTTISHIIAHEMGAN 90

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + ++ P+I KAGDLAA++TNL   D+LFIDEIHRLS  +EEILYPAMEDF+LD+++G+G
Sbjct: 91  IKVSAAPMIEKAGDLAAIMTNLSHGDILFIDEIHRLSPAIEEILYPAMEDFRLDIIIGQG 150

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            +A+++KI+L+ FTLI ATTR G+L+NPL+DRFGI  +L FY  ++L  I+ + +     
Sbjct: 151 AAAQTIKIDLAPFTLIGATTRAGMLSNPLRDRFGISAKLEFYNEDELALIITKASLKLNT 210

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + + +A EIA RSRGTPRIA RLL+RVRDFAEV     I   IA  AL  L ++++GFD
Sbjct: 211 KINEMSAKEIAKRSRGTPRIALRLLKRVRDFAEVQDKNMIDEVIAKHALNELGVNELGFD 270

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           ++DL YL ++++   G P+G+ TI+A +SE    IED+IEPY++  G+I+RT +GR+  P
Sbjct: 271 EMDLGYLKILSQ-ANGRPIGLNTIAAAMSEDEGTIEDVIEPYLLANGYIERTAKGRIATP 329

Query: 322 IAW 324
             +
Sbjct: 330 KTY 332


>gi|288574885|ref|ZP_06393242.1| Holliday junction DNA helicase RuvB [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570626|gb|EFC92183.1| Holliday junction DNA helicase RuvB [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 344

 Score =  335 bits (858), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 167/318 (52%), Positives = 231/318 (72%), Gaps = 1/318 (0%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           +VS++D D+SL RP +LE+FTGQ    + L ++++AA+ R E LDH LF GPPGLGKTTL
Sbjct: 10  DVSEKDDDLSL-RPLSLEDFTGQESIKNKLGIYVKAARQRGEPLDHSLFYGPPGLGKTTL 68

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           A ++ARE+G + R T+GP + K GDLAA+L+NL+D DVLFIDEIHR++  +EE+LY AME
Sbjct: 69  AGIIAREMGGDLRITTGPALEKTGDLAAILSNLQDNDVLFIDEIHRMNSSIEEVLYSAME 128

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           DF L ++VG+GP AR++ ++L +FTL+ ATTR+GLLT+PL+ RFGI  +L+ Y  E+L +
Sbjct: 129 DFSLHIIVGKGPLARNICLSLPKFTLVGATTRLGLLTSPLRARFGIVEQLSLYSTEELAS 188

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           I+ RGA +  +++  EAA  IA RSRGTPRIA R+LRRVRD AEVA    IT  IA+ A+
Sbjct: 189 IISRGAGVLNVSIEGEAALLIAGRSRGTPRIALRILRRVRDVAEVAGDGVITPAIAERAM 248

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
             L +D  G D  D R L  +   F GGPVG+ T++A L+E    +ED+ EPY++Q G +
Sbjct: 249 SMLGLDGFGLDDGDRRILEALVDLFSGGPVGLSTVAASLNEESQTVEDIYEPYLLQLGLL 308

Query: 311 QRTPRGRLLMPIAWQHLG 328
           +RTPRGR      +++LG
Sbjct: 309 ERTPRGRKATARTYEYLG 326


>gi|320537238|ref|ZP_08037200.1| Holliday junction DNA helicase RuvB [Treponema phagedenis F0421]
 gi|320145913|gb|EFW37567.1| Holliday junction DNA helicase RuvB [Treponema phagedenis F0421]
          Length = 342

 Score =  335 bits (858), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 162/333 (48%), Positives = 223/333 (66%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M+  G +   +   D     LRPR L +F GQ +   NL VFI+AA+ R+E+LDH+  +G
Sbjct: 3   MEEFGTVHPELQSGDDKDPALRPRLLRDFQGQEKIKQNLHVFIQAARERSESLDHLFLIG 62

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLAQ+ A ELGV F+ T  P + K  DLA +LT L +R V FIDEIHRL   +
Sbjct: 63  PPGLGKTTLAQITANELGVEFKVTGAPALDKPKDLAGILTTLTERSVFFIDEIHRLKPAI 122

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMED++LD ++G+GP AR+V+I +  FTL+ ATTR G++++PL  RFGI  R  
Sbjct: 123 EEMLYIAMEDYELDWIIGQGPGARTVRIPIPPFTLVGATTRAGMVSSPLISRFGIVQRFE 182

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY  E+L +I++R AK+  + +   AA  +A   RGTPR+A RLLRR+RDFA+VA   ++
Sbjct: 183 FYTDEELASIIERSAKILQIRIEPSAALTLAKSCRGTPRVANRLLRRMRDFAQVAGKSSV 242

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T E+    L RL ID +G +  D + L  I  N+GGGPVG ET++  + E +D +ED  E
Sbjct: 243 TEEVIAVGLKRLNIDSLGLENHDRQILRSIIENYGGGPVGAETLAISIGESQDTLEDYYE 302

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           PY+IQ G IQRTPRGR++     +HLG+ +P +
Sbjct: 303 PYLIQSGLIQRTPRGRMITEKGCRHLGMSVPEQ 335


>gi|291295268|ref|YP_003506666.1| Holliday junction DNA helicase RuvB [Meiothermus ruber DSM 1279]
 gi|290470227|gb|ADD27646.1| Holliday junction DNA helicase RuvB [Meiothermus ruber DSM 1279]
          Length = 329

 Score =  334 bits (857), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 174/320 (54%), Positives = 228/320 (71%), Gaps = 2/320 (0%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +AD++L RP+ L+++ GQ +    L+V++EAAK R EALDH+L  GPPGLGKTTLA VVA
Sbjct: 6   EADLTL-RPKRLDDYVGQAKLKKKLRVYLEAAKNRGEALDHLLLFGPPGLGKTTLAHVVA 64

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTN-LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
            ELGVN R TSGP I K GDLAA+LTN LE+ D+LFIDEIHRLS   EE LYPA+EDF++
Sbjct: 65  YELGVNIRVTSGPAIEKPGDLAAILTNSLEEGDILFIDEIHRLSKAAEEHLYPALEDFKI 124

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D+++G GP+AR+++++L RFTLI ATTR GL++ PL+ RFGI   L FY   +L   V R
Sbjct: 125 DIVIGAGPAARTLRLDLPRFTLIGATTRPGLISGPLRSRFGIIEHLEFYTETELAQGVTR 184

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A+L GLA+  EAA EI  RSRGT RIA RL RRVRDFAEVA  + +  E A  AL  L 
Sbjct: 185 DAQLMGLAIEPEAALEIGRRSRGTMRIAKRLFRRVRDFAEVAGEQVVGLERARQALDALG 244

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D +G D  D + +  +   F GGPVG+ET++  LSE  + +E++ EP++IQ G ++RTP
Sbjct: 245 LDALGLDARDRQIIQTVIERFAGGPVGLETLATALSEDPETLEEVHEPFLIQLGLLKRTP 304

Query: 315 RGRLLMPIAWQHLGIDIPHR 334
           RGR     A+ HLG  +P +
Sbjct: 305 RGRQATERAYAHLGYPLPEQ 324


>gi|148927931|ref|ZP_01811337.1| Holliday junction DNA helicase RuvB [candidate division TM7
           genomosp. GTL1]
 gi|147886720|gb|EDK72284.1| Holliday junction DNA helicase RuvB [candidate division TM7
           genomosp. GTL1]
          Length = 343

 Score =  334 bits (857), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 165/307 (53%), Positives = 218/307 (71%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPR  +E+ GQ    + L++ I AAK R E +DHVL  GPPGLGKTT+A V+A E+G N
Sbjct: 25  LRPRRFDEYIGQDRLKATLRLAITAAKKRGEPIDHVLLYGPPGLGKTTMATVIANEMGAN 84

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R T+GP I +AGDLA++LTNL + DVLFIDEIHRLS  VEE+LY AMEDF+LD+++G+G
Sbjct: 85  IRVTAGPAIERAGDLASILTNLAEGDVLFIDEIHRLSRAVEEVLYGAMEDFKLDIVIGKG 144

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARSV+++L +FTLI ATTR G L  PL+DRFG+  RL FY+  ++K I++R A + G 
Sbjct: 145 PAARSVRLDLPKFTLIGATTRTGALAAPLRDRFGLLHRLEFYQPHEVKQIIERAADILGA 204

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  +AA  +A R+R TPR+A RLL+RVRD+A+V     I    +  AL  L ID++G D
Sbjct: 205 TIHSKAAANLATRARLTPRVANRLLKRVRDYADVNGDGIIDEATSHKALNLLEIDELGLD 264

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             D   L  I  N+ GGPVG+ET++A   + R  IED  EPY++Q GF++RTPRGR L P
Sbjct: 265 AADRSLLKAIVENYKGGPVGVETLAALTGDERSTIEDFYEPYLLQIGFLERTPRGRKLTP 324

Query: 322 IAWQHLG 328
            A QHLG
Sbjct: 325 RALQHLG 331


>gi|86157380|ref|YP_464165.1| Holliday junction DNA helicase RuvB [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|97189892|sp|Q2IPJ5|RUVB_ANADE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|85773891|gb|ABC80728.1| Holliday junction DNA helicase RuvB [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 342

 Score =  334 bits (857), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 163/309 (52%), Positives = 219/309 (70%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP T +++ GQV+   N+KV+  AA+ R E+LDHVL  GPPGLGKT+LA ++ARELGV 
Sbjct: 24  LRPATFDDYVGQVKIVDNVKVYAAAARQRGESLDHVLLSGPPGLGKTSLAHILARELGVT 83

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
              TSGP + K GDLA LLT L  RD+LFIDEIHRLS  VEE LYPAMED++ D+++G G
Sbjct: 84  LHVTSGPALVKKGDLAGLLTALAPRDILFIDEIHRLSPAVEEALYPAMEDYRFDVVLGAG 143

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
             A+++++ L RFTL+ ATTR GLL +PL+DRF I  RL +Y   +LK I  R A+  GL
Sbjct: 144 LGAQTMEMKLERFTLVGATTRTGLLASPLRDRFPIQERLEYYGPAELKEIAVRAARKLGL 203

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            V ++ A E+A R+RGTPRIA RLL+R RDFA+V     +TRE+ D  L RL +D  G D
Sbjct: 204 PVDEDGAEELARRARGTPRIAIRLLQRARDFAQVEGDGRLTREVVDRTLRRLEVDARGLD 263

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D R L  +   FGGGPVGI+ ++A + E    +ED+ EP+++++G++ RTPRGR+ +P
Sbjct: 264 AMDRRILAAVIDTFGGGPVGIDAVAAAVGEESGTLEDVYEPFLVREGYLARTPRGRVALP 323

Query: 322 IAWQHLGID 330
            A+ HLG D
Sbjct: 324 AAYAHLGRD 332


>gi|157165204|ref|YP_001467229.1| Holliday junction DNA helicase B [Campylobacter concisus 13826]
 gi|166231475|sp|A7ZEM1|RUVB_CAMC1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|112801915|gb|EAT99259.1| holliday junction DNA helicase RuvB [Campylobacter concisus 13826]
          Length = 336

 Score =  334 bits (857), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 169/332 (50%), Positives = 232/332 (69%), Gaps = 6/332 (1%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MDR   + +   + D ++SL RP   E++ GQ +   NL VFI+AAK R E LDHVLF G
Sbjct: 1   MDRIVEIEKVSFENDFEVSL-RPSKFEDYIGQEKIKQNLDVFIKAAKKRNECLDHVLFYG 59

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+GV+ + T+ P+I K+GDLAA+LTNL++ DVLFIDEIHRLS  +
Sbjct: 60  PPGLGKTTLAHIIANEMGVSIKMTAAPMIEKSGDLAAILTNLQEGDVLFIDEIHRLSPAI 119

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMEDF+LD+++G GP+A+++KI+L +FTLI ATTR G+++ PL+DRFG+  RL 
Sbjct: 120 EEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMISAPLRDRFGMDFRLQ 179

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY   +L  IVQ  +   G      A+ EIA RSR TPRIA RLL+R+RDFAEV   + I
Sbjct: 180 FYTSSELSRIVQIASAKLGKECDKNASLEIAKRSRATPRIALRLLKRIRDFAEVNDEQII 239

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLT--MIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           + E A   L  L ++ +GFD++D+RYL   M AR     P+G+ TI+A LSE    +ED+
Sbjct: 240 SHERAKEGLNALGVNSLGFDEMDIRYLEILMQARR---RPMGLSTIAAALSEDEGTVEDV 296

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           IEPY++  GFI+RT +GR+     ++   + I
Sbjct: 297 IEPYLLANGFIERTAKGRIASAKCFETFNVKI 328


>gi|158337867|ref|YP_001519043.1| Holliday junction DNA helicase RuvB [Acaryochloris marina
           MBIC11017]
 gi|189045778|sp|B0C2D5|RUVB_ACAM1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|158308108|gb|ABW29725.1| holliday junction DNA helicase RuvB [Acaryochloris marina
           MBIC11017]
          Length = 375

 Score =  334 bits (856), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 164/311 (52%), Positives = 216/311 (69%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+  +E+ GQ E    L + I+A K+R EALDH+L  GPPGLGKTT++ ++A ELGVN
Sbjct: 57  LRPQRFDEYIGQRELKEVLDIAIQATKSRQEALDHLLLYGPPGLGKTTISLILAAELGVN 116

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TS P + +  D+  LL NL+ RD+LFIDEIHRLS + EE+LYPAMEDF+LD+ +G+G
Sbjct: 117 CKVTSAPALERPRDIVGLLVNLQPRDILFIDEIHRLSRMTEELLYPAMEDFRLDITIGKG 176

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            SAR   + L  FTL+ ATTRVG LT+PL+DRFG   RL FYE ++L  IV R A +   
Sbjct: 177 QSARIRSLPLKPFTLVGATTRVGALTSPLRDRFGFVQRLRFYEADELGQIVLRTADILKA 236

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T +AA E+A RSRGTPRIA RLL+RVRD+AEV H+  IT+ IA  AL    +D  G D
Sbjct: 237 KITSDAAEEVARRSRGTPRIANRLLKRVRDYAEVKHSGEITQTIAQEALELFNVDPCGLD 296

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             D R LT++   + GGPVG++T++A   E    IE++ EPY++Q G++ RTPRGR+  P
Sbjct: 297 WTDRRLLTVMIEQYNGGPVGVDTLAAATGEDSQTIEEVYEPYLMQIGYLNRTPRGRVATP 356

Query: 322 IAWQHLGIDIP 332
            AW HLG   P
Sbjct: 357 AAWTHLGYQPP 367


>gi|296170844|ref|ZP_06852405.1| crossover junction ATP-dependent DNA helicase RuvB [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295894500|gb|EFG74241.1| crossover junction ATP-dependent DNA helicase RuvB [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 347

 Score =  334 bits (856), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 170/335 (50%), Positives = 232/335 (69%), Gaps = 4/335 (1%)

Query: 1   MMD---REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           MMD   RE   +  V + D D+SL RPR+L EF GQ      L++ IE AK R    DH+
Sbjct: 1   MMDDAERELSPALAVGEGDIDVSL-RPRSLREFIGQPRVREQLQLVIEGAKNRGGTPDHI 59

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKT+LA ++A ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR+
Sbjct: 60  LLSGPPGLGKTSLAMIIAAELGSSLRVTSGPALERAGDLAAMLSNLVEHDVLFIDEIHRI 119

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           +   EE+LY AMEDF++D++VG+GP A S+ + ++ FTL+ ATTR G LT PL+DRFG  
Sbjct: 120 ARPAEEMLYLAMEDFRVDVVVGKGPGATSIPLEVAPFTLVGATTRSGALTGPLRDRFGFT 179

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
             ++FYE  +L+ ++ R A + G+ +  EAA EIA RSRGTPRIA RLLRRVRDFAEV  
Sbjct: 180 AHMDFYEPAELELVLARSAGILGIELGAEAAEEIARRSRGTPRIANRLLRRVRDFAEVRA 239

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
              ITR++A +AL    +D++G D+LD   LT + R+FGGGPVG+ T++  + E    +E
Sbjct: 240 DGVITRDVAKSALAVYDVDELGLDRLDRAVLTALTRSFGGGPVGVSTLAVAVGEEATTVE 299

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++ EP++++ G + RTPRGR+    AW HLG+  P
Sbjct: 300 EVCEPFLVRAGMVARTPRGRVATAQAWTHLGMSPP 334


>gi|300934558|ref|ZP_07149814.1| Holliday junction DNA helicase RuvB [Corynebacterium resistens DSM
           45100]
          Length = 362

 Score =  333 bits (855), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 162/319 (50%), Positives = 226/319 (70%), Gaps = 1/319 (0%)

Query: 16  DADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           D+D+ S LRP++L EF GQ +  + L + +  A+ R    DHVL  GPPGLGKTT+A ++
Sbjct: 39  DSDVESSLRPKSLSEFIGQPKVRTQLDLVLGGARTRGVVPDHVLLAGPPGLGKTTMAMII 98

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A+ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++   EE+LY AMEDF++
Sbjct: 99  AQELGSSLRMTSGPALERAGDLAAMLSNLMEGDVLFIDEIHRIARPAEEMLYMAMEDFRI 158

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D++VG+GP A S+ I ++ FTL+ ATTR G+LT PL+DRFG   ++ FY++EDL  +V R
Sbjct: 159 DVIVGKGPGATSIPIEVAPFTLVGATTRAGMLTGPLRDRFGFTAQMEFYDVEDLTRVVTR 218

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A + G+ V  +AA EIA RSRGTPRIA RLLRRVRDFA+V     +T E+A AALL   
Sbjct: 219 AAGILGVHVDSDAASEIASRSRGTPRIANRLLRRVRDFADVNADGRVTLEVAKAALLVFD 278

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D+ G D+LD   L  + R  GGGPVG+ T++  + E    +E++ EPY+++ G + RTP
Sbjct: 279 VDESGLDRLDRAVLDALVRGHGGGPVGVNTLAIAVGEEPSTVEEVCEPYLVRAGMLARTP 338

Query: 315 RGRLLMPIAWQHLGIDIPH 333
           RGR+    AW+H+G++ P 
Sbjct: 339 RGRVATAAAWRHVGLEPPE 357


>gi|325283973|ref|YP_004256514.1| Holliday junction ATP-dependent DNA helicase ruvB [Deinococcus
           proteolyticus MRP]
 gi|324315782|gb|ADY26897.1| Holliday junction ATP-dependent DNA helicase ruvB [Deinococcus
           proteolyticus MRP]
          Length = 330

 Score =  333 bits (855), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 169/319 (52%), Positives = 226/319 (70%), Gaps = 1/319 (0%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           ++  +++ + LRPR+L E+ GQ +    L V+++AA+ R EALDH L  GPPGLGKTTLA
Sbjct: 1   MTGTESNDAALRPRSLTEYVGQAKLKDKLGVYLQAARGRGEALDHTLLFGPPGLGKTTLA 60

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTN-LEDRDVLFIDEIHRLSIIVEEILYPAME 130
            ++A ELGVN R TSGP I K GDLAA+LTN LE+ DVLFIDEIHRL  + EE LYPAME
Sbjct: 61  HIIAYELGVNIRVTSGPAIEKPGDLAAILTNSLEEGDVLFIDEIHRLGRVAEEHLYPAME 120

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           DF+LD+++G+GP+AR++++ L RFTL+ ATTR GL+T P++ RFGI   L +Y  E++  
Sbjct: 121 DFKLDIVLGQGPAARTIELPLPRFTLVGATTRPGLITAPMRSRFGIIEHLEYYTAEEIAQ 180

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
            + R A+L G  + + AA EI  RSRGT RIA RLLRRVRDF EVA    I+ E A  AL
Sbjct: 181 NLLRDARLLGFDLDEAAALEIGGRSRGTMRIAKRLLRRVRDFTEVAGEPCISLERAHDAL 240

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
            +L +D  G D  D +YL  +   F GGPVG++T++  +SE    +ED+ EP++IQ GFI
Sbjct: 241 DKLGLDSAGLDDRDKKYLETLIHRFAGGPVGLDTLATAISEDALTLEDVYEPFLIQLGFI 300

Query: 311 QRTPRGRLLMPIAWQHLGI 329
           +RTPRGR+    A+ HLG+
Sbjct: 301 KRTPRGRVATAHAYDHLGL 319


>gi|332298113|ref|YP_004440035.1| Holliday junction ATP-dependent DNA helicase ruvB [Treponema
           brennaborense DSM 12168]
 gi|332181216|gb|AEE16904.1| Holliday junction ATP-dependent DNA helicase ruvB [Treponema
           brennaborense DSM 12168]
          Length = 339

 Score =  333 bits (855), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 165/329 (50%), Positives = 230/329 (69%), Gaps = 2/329 (0%)

Query: 7   LLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           +L  NV   +D   + LRP+ L +F GQ     NL VFIEAA+ R E+LDH+  +GPPGL
Sbjct: 4   ILHANVPFDDDTQDTTLRPQLLRDFLGQTSVKENLSVFIEAARTRRESLDHLFLIGPPGL 63

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLAQ+ A ELG +F+ TS P + K  DLA +L+ + +R V FIDEIHRL   +EE+L
Sbjct: 64  GKTTLAQITAHELGADFKVTSAPALDKPKDLAGILSTITERTVFFIDEIHRLKPAIEEML 123

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           Y AMED++LD ++G+G +AR+V+I +  FTL+ ATT+ G++++PL  RFGI  R +FY+ 
Sbjct: 124 YIAMEDYELDWVIGQGAAARTVRIPVPHFTLVGATTKAGMVSSPLISRFGIVQRFSFYDA 183

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           E+L +I++R A +  + V D+AA  +A  +RGTPR+A R+LRR+RDFA+V    TITR++
Sbjct: 184 EELASIIRRSAGILNVTVADDAARLMAECARGTPRVANRVLRRMRDFAQVMGDGTITRQV 243

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           A A L RL ID +G ++ D   L  I  NFGGGPVG ET++  + E  D +ED  EPY+I
Sbjct: 244 AAAGLTRLEIDSLGLEKYDREILLSIIENFGGGPVGAETLAISIGESIDTLEDYYEPYLI 303

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGID-IPH 333
           Q G IQRTPRGR++   A++HLG++  PH
Sbjct: 304 QCGLIQRTPRGRVVTEKAYKHLGLEGRPH 332


>gi|68536131|ref|YP_250836.1| Holliday junction DNA helicase B [Corynebacterium jeikeium K411]
 gi|260578826|ref|ZP_05846733.1| Holliday junction DNA helicase RuvB [Corynebacterium jeikeium ATCC
           43734]
 gi|97190006|sp|Q4JVD9|RUVB_CORJK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|68263730|emb|CAI37218.1| holliday junction DNA helicase [Corynebacterium jeikeium K411]
 gi|258603124|gb|EEW16394.1| Holliday junction DNA helicase RuvB [Corynebacterium jeikeium ATCC
           43734]
          Length = 354

 Score =  333 bits (854), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 161/319 (50%), Positives = 228/319 (71%), Gaps = 1/319 (0%)

Query: 16  DADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           D+DI + LRP++L+EF GQ +  + L + +  A++R  A DHVL  GPPGLGKTT+A ++
Sbjct: 31  DSDIDTSLRPKSLDEFIGQPKVRTQLDLVLGGARSRGVAPDHVLLAGPPGLGKTTMAMII 90

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A+ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++   EE+LY AMEDF++
Sbjct: 91  AQELGSSLRMTSGPALERAGDLAAMLSNLMEGDVLFIDEIHRMARPAEEMLYMAMEDFRI 150

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D++VG+GP A S+ I ++ FTL+ ATTR G+LT PL+DRFG   ++ FY+  DL  +V R
Sbjct: 151 DVIVGKGPGATSIPIEIAPFTLVGATTRAGMLTGPLRDRFGFTAQMEFYDTADLTRVVTR 210

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A + G+ +T +AA EIA RSRGTPRIA RLLRRVRDFA+V     IT E+A AALL   
Sbjct: 211 AAGILGVDITGDAAAEIASRSRGTPRIANRLLRRVRDFADVNADGKITVEVARAALLVFD 270

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D+ G D+LD   +  + +  GGGPVG+ T++  + E    +E++ EPY+++ G + RTP
Sbjct: 271 VDESGLDRLDRAVIEALVKGHGGGPVGVNTLALAVGEEPSTVEEVCEPYLVRAGMVSRTP 330

Query: 315 RGRLLMPIAWQHLGIDIPH 333
           RGR+    AW+H+G++ P 
Sbjct: 331 RGRVATAAAWRHIGLEPPE 349


>gi|171910892|ref|ZP_02926362.1| Holliday junction DNA helicase B [Verrucomicrobium spinosum DSM
           4136]
          Length = 344

 Score =  333 bits (854), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 159/312 (50%), Positives = 223/312 (71%), Gaps = 1/312 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP    EFTGQ      L + +EAA+ R + LDHVL  GPPGLGKTTLA +VA  +G  
Sbjct: 21  LRPPDFSEFTGQERVKERLVLMVEAARQRGDTLDHVLLCGPPGLGKTTLANIVATAVGSK 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
             STSGP I +AGDLA +LTNL++RD+LFIDEIHRL   +EE LYPAMEDF+LD+++ +G
Sbjct: 81  LHSTSGPQIERAGDLAGILTNLQERDILFIDEIHRLHPSIEEYLYPAMEDFRLDIIIDQG 140

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P AR+++I+L  FTL+ ATTR G+LT P++ RFGIP RL++Y +++L+ I+ R A L  +
Sbjct: 141 PKARTIRIDLPPFTLVGATTRAGMLTAPMRGRFGIPNRLDYYTVDELQKILLRSAGLIQV 200

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV-AHAKTITREIADAALLRLAIDKMGF 260
            +  + A E+A RSRGTPR+A  LLR VRD+A+V A  + ++ ++A AAL  L ID+ G 
Sbjct: 201 QMESDGAREVAKRSRGTPRVANHLLRWVRDYAQVRAANQAVSGQVAAAALSMLDIDEDGL 260

Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320
           D++D R L  +   F GGPVG+ +I+  + E    +ED+ EPY++ QG+++RTPRGR+ M
Sbjct: 261 DEMDKRILDALINKFAGGPVGLNSIAVAVHEDASTLEDVHEPYLVMQGYVKRTPRGRVAM 320

Query: 321 PIAWQHLGIDIP 332
           P A++ LG+ +P
Sbjct: 321 PSAYKKLGLPVP 332


>gi|315037645|ref|YP_004031213.1| Holliday junction DNA helicase RuvB [Lactobacillus amylovorus GRL
           1112]
 gi|312275778|gb|ADQ58418.1| Holliday junction DNA helicase RuvB [Lactobacillus amylovorus GRL
           1112]
          Length = 338

 Score =  333 bits (854), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 168/320 (52%), Positives = 225/320 (70%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           S+E+A    LRP+TL+++ GQ      + ++I+AAK R EALDHVL  GPPGLGKTTLA 
Sbjct: 16  SEEEAMELSLRPQTLDQYLGQERVKKEMSIYIKAAKKRDEALDHVLLYGPPGLGKTTLAF 75

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           V+A ELGV+ +STSGP I KAGDL ALL++L+  DVLFIDEIHRL+  VEEILY AMED+
Sbjct: 76  VIANELGVHLKSTSGPAIEKAGDLVALLSDLDPGDVLFIDEIHRLAKPVEEILYSAMEDY 135

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            +D+++GEG +  +V + L  FTLI ATT  G L+ PL+DRFGI   + +Y +++L+ IV
Sbjct: 136 YIDIVIGEGQTTHAVHVPLPPFTLIGATTLAGQLSAPLRDRFGIVEHMQYYTVDELEKIV 195

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           QR + +   ++  EAA E+A RSRGTPR+A RLL+RVRDFAEV   KTI+    + AL +
Sbjct: 196 QRSSDVFHTSIAPEAAHELARRSRGTPRVANRLLKRVRDFAEVKGEKTISLATTENALKQ 255

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D  G DQ D + L  +   + GGPVGI T++A + E  + IE L EPY++Q GFI  
Sbjct: 256 LQVDDEGLDQTDRKLLRTMIEGYNGGPVGIRTLAANIGEDMETIESLYEPYLLQHGFILL 315

Query: 313 TPRGRLLMPIAWQHLGIDIP 332
           TPRGR++   A+  LG+ IP
Sbjct: 316 TPRGRMVTDKAYLQLGLPIP 335


>gi|319937622|ref|ZP_08012026.1| Holliday junction DNA helicase B [Coprobacillus sp. 29_1]
 gi|319807264|gb|EFW03876.1| Holliday junction DNA helicase B [Coprobacillus sp. 29_1]
          Length = 334

 Score =  333 bits (854), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 160/317 (50%), Positives = 225/317 (70%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           S  + + + LRP++ +E+ GQ    SNLKVF+ AAK R E LDHVL  GPPGLGKTT++ 
Sbjct: 12  SHNEDEENQLRPQSFDEYVGQSHLKSNLKVFVGAAKLRDETLDHVLLYGPPGLGKTTMSM 71

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++A E+G + ++T+GP I K GDL A+LT+LE  DVLFIDEIHRL+ +VEEILYPAMEDF
Sbjct: 72  IIANEMGTHLKTTTGPSIEKTGDLVAILTSLEPGDVLFIDEIHRLNKVVEEILYPAMEDF 131

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            +D+++G+  S RS++I+L  FTL+ ATTR G L+ PL+DRFGI  +L +Y  ++L  I+
Sbjct: 132 CVDVVIGKEASTRSIRIDLPPFTLVGATTRAGDLSAPLRDRFGIVSKLEYYNEDELTQII 191

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R +++  + +  EA  E+A RSRGTPRIA RL RRVRDFA+      IT+     AL R
Sbjct: 192 NRTSRVYHMDMDLEAQSELAKRSRGTPRIANRLFRRVRDFAQYNGDDIITKARTVEALQR 251

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D++G D +D +Y+  I   F GGPVG+E+++A + E    +ED+ EPY++Q G I+R
Sbjct: 252 LKVDELGLDDVDHKYILGIIHRFRGGPVGLESVAASIGEEPMTLEDVYEPYLLQTGLIKR 311

Query: 313 TPRGRLLMPIAWQHLGI 329
           TPRGR++  +A+QH  I
Sbjct: 312 TPRGRVVTELAYQHFHI 328


>gi|282889611|ref|ZP_06298152.1| hypothetical protein pah_c002o062 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500534|gb|EFB42812.1| hypothetical protein pah_c002o062 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 337

 Score =  333 bits (853), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 163/328 (49%), Positives = 230/328 (70%), Gaps = 1/328 (0%)

Query: 2   MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M  +  +  +  QED    + LRP+ L++F GQ      L+V I AAK R EAL H LF 
Sbjct: 1   MTTKNYIESSFCQEDTTFEVPLRPQALDDFAGQDSIRERLEVLIGAAKQRGEALGHCLFS 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A+ +G N   TSGP+I KAGDLA +LTNL++ D+LFIDE+HRL   
Sbjct: 61  GPPGLGKTTLANILAKAMGTNIVVTSGPLIEKAGDLAGVLTNLKEGDILFIDELHRLQPA 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EE LYP MEDF LDLM+ +GP+ARS++I L RFTL+ ATTRVGLLT+P++ RF    RL
Sbjct: 121 IEEYLYPPMEDFVLDLMIDKGPNARSIQIKLPRFTLVGATTRVGLLTSPMRSRFAFSCRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           ++YE + L+ I+ R A++  + +  +   EIA R+RGTPRIA  LLR VRD+A++     
Sbjct: 181 DYYEPKVLEQILGRTAQILHMTIDQKGLAEIAQRARGTPRIANHLLRWVRDYAQMRANNI 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           IT+ I   AL  LAID++GFD++D + L ++  ++ GGPVG+ T++  + E ++ IE++ 
Sbjct: 241 ITQPIVIKALEMLAIDQIGFDEMDKKILEVLIDDYNGGPVGLNTLAVAIGEEKNTIEEVH 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
           EPY+I +GFI+RTP+GR+    A++HLG
Sbjct: 301 EPYLIMKGFIKRTPKGRVATESAYKHLG 328


>gi|237752769|ref|ZP_04583249.1| holliday junction DNA helicase B [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229376258|gb|EEO26349.1| holliday junction DNA helicase B [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 333

 Score =  333 bits (853), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 163/297 (54%), Positives = 219/297 (73%), Gaps = 1/297 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP   +++ GQ +   NL+VFIEAAK R + LDH+L  GPPGLGKTTLA +++ E+  +
Sbjct: 20  LRPSCWDDYIGQEKLKKNLQVFIEAAKKRGDVLDHLLLFGPPGLGKTTLAHIISTEMQTS 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + T+ P+I KAGDLAA+LTNL + ++LFIDEIHRLS  +EEILYPAMEDF+LD+++G G
Sbjct: 80  IKVTAAPMIEKAGDLAAILTNLNEGEILFIDEIHRLSPAIEEILYPAMEDFRLDIIIGSG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+A+SVKI+L RFTLI ATTR G+++NPL+DRFG+  R+ FYE ++L  IV   +     
Sbjct: 140 PAAQSVKIDLPRFTLIGATTRAGMISNPLRDRFGMQFRMQFYENDELAKIVTLASIKLQK 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
               E A EIA RSRGTPRIA RLL+RVRDFAEVA    IT+E    AL  L +++ GFD
Sbjct: 200 ECKKEGALEIAKRSRGTPRIALRLLKRVRDFAEVAEEAMITKERTQYALNELGVNEHGFD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRL 318
           +LDLR+L +I  +  G P+G+ T++A +SE    IED+IEPY++  GF++RT RGR+
Sbjct: 260 ELDLRFLKIICES-RGRPIGLSTLAAAMSEDEGTIEDVIEPYLLVNGFLERTARGRI 315


>gi|239616615|ref|YP_002939937.1| Holliday junction DNA helicase RuvB [Kosmotoga olearia TBF 19.5.1]
 gi|259495671|sp|C5CIU4|RUVB_KOSOT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|239505446|gb|ACR78933.1| Holliday junction DNA helicase RuvB [Kosmotoga olearia TBF 19.5.1]
          Length = 342

 Score =  333 bits (853), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 166/308 (53%), Positives = 220/308 (71%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L+E+ GQ      LK+ IEAAK R EALDHVL  GPPGLGKTTLA ++A E+G N
Sbjct: 20  LRPQRLDEYIGQRNVKQRLKISIEAAKVRNEALDHVLLAGPPGLGKTTLAHIIANEMGTN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
              TSGPVI K GDLAA+LT+LE+ DVLFIDEIHRL   +EEILY AMEDF+LD+M+G+G
Sbjct: 80  IYVTSGPVIEKQGDLAAILTSLEEGDVLFIDEIHRLGRAIEEILYSAMEDFKLDIMIGKG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSARS++++L+ FTL+ ATTR GL+  PL++RFG+ + L FY  ++LK I++R A+L  +
Sbjct: 140 PSARSIRLDLAPFTLVGATTRSGLIGAPLRNRFGMVLELEFYTPDELKQIIKRSARLLEV 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + DEAA  +A RSRGTPRIA RLLRRVRD A V     I  +  + A+  + ID  G D
Sbjct: 200 KIDDEAAELLASRSRGTPRIANRLLRRVRDLATVDGTGKILSKTVEDAMKIMGIDAEGLD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L ++  N+ GGP G++ I+A +    D I ++ EPY++Q GFI RT RGR+   
Sbjct: 260 DMDRKILRVLIENYEGGPAGLKAIAASVGIEADTISEVYEPYLLQSGFIVRTNRGRMATK 319

Query: 322 IAWQHLGI 329
            A++HLGI
Sbjct: 320 KAYRHLGI 327


>gi|313158960|gb|EFR58337.1| Holliday junction DNA helicase RuvB [Alistipes sp. HGB5]
          Length = 335

 Score =  333 bits (853), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 166/311 (53%), Positives = 221/311 (71%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ LE F+GQ +   NL++FI+AA  R ++LDHVL  GPPGLGKTTLA +++ E+   
Sbjct: 17  IRPQELETFSGQDKIVDNLRIFIKAALMRGDSLDHVLLHGPPGLGKTTLANIISNEMNAQ 76

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGPV+ K GDLA LLT+L   DVLFIDEIHRLS IVEE LY AMED+++D+++ +G
Sbjct: 77  LRVTSGPVLDKPGDLAGLLTSLNPGDVLFIDEIHRLSPIVEEYLYSAMEDYKIDIVLDKG 136

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSARS++I L+ FTLI ATTR GLLT+PL+ RFGI   L +Y+   L  IV+R A++  +
Sbjct: 137 PSARSIQIELAPFTLIGATTRSGLLTSPLRARFGIQCHLEYYDAPVLAGIVKRSARILDV 196

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
           ++ D+AA E+A+RSRGTPRIA  LLRRVRDFA V     I  EI    L  L ID  G D
Sbjct: 197 SIDDDAAHEVALRSRGTPRIANALLRRVRDFAMVKGEGHIDLEITQIGLAALNIDSRGLD 256

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           Q+D + L  I   FGGGPVG+ TI+  + E    IE++ EP++I++GF++RTPRGR    
Sbjct: 257 QMDNKILGTIIEKFGGGPVGLNTIATAVGEDAGTIEEVYEPFLIKEGFLKRTPRGREATE 316

Query: 322 IAWQHLGIDIP 332
           +A++H+G   P
Sbjct: 317 LAYRHMGFTPP 327


>gi|283769123|ref|ZP_06342028.1| Holliday junction DNA helicase RuvB [Bulleidia extructa W1219]
 gi|283104309|gb|EFC05687.1| Holliday junction DNA helicase RuvB [Bulleidia extructa W1219]
          Length = 337

 Score =  333 bits (853), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 165/309 (53%), Positives = 225/309 (72%), Gaps = 1/309 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP +L+E+ GQ     NL+++I+AA AR E+LDHVL  GPPGLGKTTLA ++A E+   
Sbjct: 20  LRPISLQEYIGQDRLKENLRIYIQAALAREESLDHVLLYGPPGLGKTTLAHILANEMNSK 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG-E 140
            + TSGP IAKAGDLA++L+ LE  DVLFIDEIHRL  +VEE+LYPAMEDF LD+ +G +
Sbjct: 80  IKVTSGPSIAKAGDLASILSVLEPGDVLFIDEIHRLPKVVEEVLYPAMEDFVLDVTIGGD 139

Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
             S RS++++L  FTL+ ATTR G L++PL+DRFGI  +L +Y  E L  IV R A++  
Sbjct: 140 SGSVRSLRLDLPPFTLVGATTRAGDLSSPLRDRFGITSKLEYYTQEQLAKIVARTARVLD 199

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGF 260
             + ++A  EIA RSRGTPRIA RLLRR+RDFA+V +   ++ EIA  AL RL +D++G 
Sbjct: 200 TPIEEKAVIEIAKRSRGTPRIANRLLRRIRDFAQVLNHGYLSYEIARDALQRLHVDELGL 259

Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320
           D++D+RYL  I   F GGPVG+++++  +SE    +ED+ EPY+IQ GF+ RT RGR++ 
Sbjct: 260 DEVDIRYLKGIIERFHGGPVGLDSLANAISEETTTLEDVYEPYLIQIGFVNRTSRGRVVT 319

Query: 321 PIAWQHLGI 329
             A++HL I
Sbjct: 320 EKAYEHLHI 328


>gi|118473727|ref|YP_887264.1| Holliday junction DNA helicase RuvB [Mycobacterium smegmatis str.
           MC2 155]
 gi|171472979|sp|A0QWH6|RUVB_MYCS2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|118175014|gb|ABK75910.1| holliday junction DNA helicase RuvB [Mycobacterium smegmatis str.
           MC2 155]
          Length = 351

 Score =  333 bits (853), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 167/330 (50%), Positives = 229/330 (69%), Gaps = 1/330 (0%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           DRE   +  V + D D SL RPR+L EF GQ      L++ +E AK R    DH+L  GP
Sbjct: 12  DREVSPALTVGEGDIDASL-RPRSLGEFIGQPRVREQLQLVLEGAKKRGGTPDHILLSGP 70

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKT+LA ++A ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++   E
Sbjct: 71  PGLGKTSLAMIIAAELGSSLRVTSGPALERAGDLAAMLSNLVEHDVLFIDEIHRIARPAE 130

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LY AMEDF++D++VG+GP A S+ + ++ FTL+ ATTR G LT PL+DRFG    ++F
Sbjct: 131 EMLYLAMEDFRVDVVVGKGPGATSIPLEVAPFTLVGATTRSGALTGPLRDRFGFTAHMDF 190

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           YE  +L+ ++ R A + G+ +  EA  EIA RSRGTPRIA RLLRRVRDFAEV     IT
Sbjct: 191 YEPVELERVLARSAGILGIELGAEAGAEIARRSRGTPRIANRLLRRVRDFAEVRADGIIT 250

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           R+IA +AL    +D++G D+LD   L+ + R+F GGPVG+ T++  + E    +E++ EP
Sbjct: 251 RDIAKSALEVYDVDELGLDRLDRAVLSALTRSFNGGPVGVSTLAVAVGEEATTVEEVCEP 310

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++++ G I RTPRGR+  P+AW HLG+  P
Sbjct: 311 FLVRAGMIARTPRGRVATPLAWTHLGLQPP 340


>gi|30022495|ref|NP_834126.1| Holliday junction DNA helicase B [Bacillus cereus ATCC 14579]
 gi|29898053|gb|AAP11327.1| Holliday junction DNA helicase ruvB [Bacillus cereus ATCC 14579]
          Length = 286

 Score =  333 bits (853), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 161/283 (56%), Positives = 212/283 (74%)

Query: 50  RAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVL 109
           R E LDHVL  GPPGLGKTTLA ++A E+GVN ++TSGP I + GDLAA+LT L+  DVL
Sbjct: 2   REETLDHVLLYGPPGLGKTTLANIIANEMGVNVKTTSGPAIGRPGDLAAVLTALQPGDVL 61

Query: 110 FIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           FIDEIHRL   +EE+LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTR G L+ P
Sbjct: 62  FIDEIHRLHRSIEEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAP 121

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           L+DRFG+  R+ +Y ++ L  IV+R A++  + +   AA EIA R+RGTPRIA RLLRRV
Sbjct: 122 LRDRFGVLSRVEYYTVDQLSAIVERTAEVFEVEIDSLAALEIARRARGTPRIANRLLRRV 181

Query: 230 RDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGL 289
           RDFA+V    T+T EI   AL  L +DK+G D +D + L  I   F GGPVG+ET+SA +
Sbjct: 182 RDFAQVRGNGTVTMEITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSAPI 241

Query: 290 SEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
            E    IED+ EPY++Q GF+QRTPRGR++ P+A++H G++IP
Sbjct: 242 GEESHTIEDVYEPYLLQIGFLQRTPRGRIVTPLAYEHFGMEIP 284


>gi|284044635|ref|YP_003394975.1| Holliday junction DNA helicase RuvB [Conexibacter woesei DSM 14684]
 gi|283948856|gb|ADB51600.1| Holliday junction DNA helicase RuvB [Conexibacter woesei DSM 14684]
          Length = 338

 Score =  333 bits (853), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 171/311 (54%), Positives = 213/311 (68%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPR L+EF GQ      L V IEAA AR +ALDHVL  GPPGLGKT+LAQ+VA ELGV 
Sbjct: 21  LRPRRLDEFVGQEAVREQLSVSIEAASARGDALDHVLLAGPPGLGKTSLAQIVAEELGVQ 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           F  T+GP + + GD+AA LT LE R V F+DEIHRL   +EE  YPAMED QL + VG+G
Sbjct: 81  FIQTAGPALERKGDVAAFLTALEPRAVFFVDEIHRLPRALEETFYPAMEDGQLPITVGQG 140

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
             A+ V ++L  FTL+ ATTR GLLT PL+DRFGI  RL  Y  +DL  IV+R A L G+
Sbjct: 141 AGAKVVTLDLPPFTLVGATTRAGLLTTPLRDRFGIQHRLEHYGPDDLGRIVRRSAALLGI 200

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            V    A  IA RSRGTPR+A RLL+RVRD+AEV     +T ++A  AL  L +D MG D
Sbjct: 201 EVEQAGARAIAARSRGTPRVANRLLKRVRDYAEVRGDGIVTEQVAAHALDLLQVDAMGLD 260

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           +LD   L  I   F GGPVG+ T++  + E +D IED+ EPY++Q+G I+RTPRGR+   
Sbjct: 261 RLDREVLRAICEMFSGGPVGLSTLAVAVGEEQDTIEDVYEPYLLQRGLIERTPRGRVATV 320

Query: 322 IAWQHLGIDIP 332
            AW+HLG++ P
Sbjct: 321 RAWRHLGLEPP 331


>gi|15609729|ref|NP_217108.1| Holliday junction DNA helicase RuvB [Mycobacterium tuberculosis
           H37Rv]
 gi|15842132|ref|NP_337169.1| Holliday junction DNA helicase RuvB [Mycobacterium tuberculosis
           CDC1551]
 gi|31793776|ref|NP_856269.1| Holliday junction DNA helicase RuvB [Mycobacterium bovis AF2122/97]
 gi|121638477|ref|YP_978701.1| Holliday junction DNA helicase RuvB [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|148662431|ref|YP_001283954.1| Holliday junction DNA helicase RuvB [Mycobacterium tuberculosis
           H37Ra]
 gi|148823787|ref|YP_001288541.1| Holliday junction DNA helicase B [Mycobacterium tuberculosis F11]
 gi|215404542|ref|ZP_03416723.1| Holliday junction DNA helicase RuvB [Mycobacterium tuberculosis
           02_1987]
 gi|215412368|ref|ZP_03421128.1| Holliday junction DNA helicase RuvB [Mycobacterium tuberculosis
           94_M4241A]
 gi|215427995|ref|ZP_03425914.1| Holliday junction DNA helicase RuvB [Mycobacterium tuberculosis
           T92]
 gi|215431547|ref|ZP_03429466.1| Holliday junction DNA helicase RuvB [Mycobacterium tuberculosis
           EAS054]
 gi|215446843|ref|ZP_03433595.1| Holliday junction DNA helicase RuvB [Mycobacterium tuberculosis
           T85]
 gi|218754330|ref|ZP_03533126.1| Holliday junction DNA helicase RuvB [Mycobacterium tuberculosis GM
           1503]
 gi|219558596|ref|ZP_03537672.1| Holliday junction DNA helicase RuvB [Mycobacterium tuberculosis
           T17]
 gi|224990971|ref|YP_002645658.1| Holliday junction DNA helicase B [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253798326|ref|YP_003031327.1| Holliday junction DNA helicase ruvB [Mycobacterium tuberculosis KZN
           1435]
 gi|254232710|ref|ZP_04926037.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis C]
 gi|254365261|ref|ZP_04981306.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis
           str. Haarlem]
 gi|254551643|ref|ZP_05142090.1| Holliday junction DNA helicase RuvB [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|260187605|ref|ZP_05765079.1| Holliday junction DNA helicase RuvB [Mycobacterium tuberculosis
           CPHL_A]
 gi|260201720|ref|ZP_05769211.1| Holliday junction DNA helicase RuvB [Mycobacterium tuberculosis
           T46]
 gi|260205914|ref|ZP_05773405.1| Holliday junction DNA helicase RuvB [Mycobacterium tuberculosis
           K85]
 gi|289444131|ref|ZP_06433875.1| Holliday junction DNA helicase RuvB [Mycobacterium tuberculosis
           T46]
 gi|289448242|ref|ZP_06437986.1| Holliday junction DNA helicase RuvB [Mycobacterium tuberculosis
           CPHL_A]
 gi|289553619|ref|ZP_06442829.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis KZN
           605]
 gi|289570763|ref|ZP_06450990.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis
           T17]
 gi|289575302|ref|ZP_06455529.1| Holliday junction DNA helicase ruvB [Mycobacterium tuberculosis
           K85]
 gi|289746385|ref|ZP_06505763.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis
           02_1987]
 gi|289751216|ref|ZP_06510594.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis
           T92]
 gi|289754711|ref|ZP_06514089.1| holliday junction DNA helicase B [Mycobacterium tuberculosis
           EAS054]
 gi|289758723|ref|ZP_06518101.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis
           T85]
 gi|289762765|ref|ZP_06522143.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis GM
           1503]
 gi|294994299|ref|ZP_06799990.1| Holliday junction DNA helicase RuvB [Mycobacterium tuberculosis
           210]
 gi|297635202|ref|ZP_06952982.1| Holliday junction DNA helicase RuvB [Mycobacterium tuberculosis KZN
           4207]
 gi|297732195|ref|ZP_06961313.1| Holliday junction DNA helicase RuvB [Mycobacterium tuberculosis KZN
           R506]
 gi|298526067|ref|ZP_07013476.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis
           94_M4241A]
 gi|306776866|ref|ZP_07415203.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis
           SUMu001]
 gi|306972981|ref|ZP_07485642.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis
           SUMu010]
 gi|307080691|ref|ZP_07489861.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis
           SUMu011]
 gi|307085280|ref|ZP_07494393.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis
           SUMu012]
 gi|313659530|ref|ZP_07816410.1| Holliday junction DNA helicase RuvB [Mycobacterium tuberculosis KZN
           V2475]
 gi|54039577|sp|P66754|RUVB_MYCBO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|54042205|sp|P66753|RUVB_MYCTU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|166231503|sp|A1KLU0|RUVB_MYCBP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|166231504|sp|A5U5U2|RUVB_MYCTA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|254767433|sp|C1AF61|RUVB_MYCBT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|3261621|emb|CAB01285.1| PROBABLE HOLLIDAY JUNCTION DNA HELICASE RUVB [Mycobacterium
           tuberculosis H37Rv]
 gi|13882416|gb|AAK46983.1| Holliday junction DNA helicase RuvB [Mycobacterium tuberculosis
           CDC1551]
 gi|31619370|emb|CAD94808.1| PROBABLE HOLLIDAY JUNCTION DNA HELICASE RUVB [Mycobacterium bovis
           AF2122/97]
 gi|121494125|emb|CAL72603.1| Probable holliday junction DNA helicase ruvB [Mycobacterium bovis
           BCG str. Pasteur 1173P2]
 gi|124601769|gb|EAY60779.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis C]
 gi|134150774|gb|EBA42819.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis
           str. Haarlem]
 gi|148506583|gb|ABQ74392.1| Holliday junction DNA helicase RuvB [Mycobacterium tuberculosis
           H37Ra]
 gi|148722314|gb|ABR06939.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis
           F11]
 gi|224774084|dbj|BAH26890.1| Holliday junction DNA helicase B [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253319829|gb|ACT24432.1| Holliday junction DNA helicase ruvB [Mycobacterium tuberculosis KZN
           1435]
 gi|289417050|gb|EFD14290.1| Holliday junction DNA helicase RuvB [Mycobacterium tuberculosis
           T46]
 gi|289421200|gb|EFD18401.1| Holliday junction DNA helicase RuvB [Mycobacterium tuberculosis
           CPHL_A]
 gi|289438251|gb|EFD20744.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis KZN
           605]
 gi|289539733|gb|EFD44311.1| Holliday junction DNA helicase ruvB [Mycobacterium tuberculosis
           K85]
 gi|289544517|gb|EFD48165.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis
           T17]
 gi|289686913|gb|EFD54401.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis
           02_1987]
 gi|289691803|gb|EFD59232.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis
           T92]
 gi|289695298|gb|EFD62727.1| holliday junction DNA helicase B [Mycobacterium tuberculosis
           EAS054]
 gi|289710271|gb|EFD74287.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis GM
           1503]
 gi|289714287|gb|EFD78299.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis
           T85]
 gi|298495861|gb|EFI31155.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis
           94_M4241A]
 gi|308214721|gb|EFO74120.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis
           SUMu001]
 gi|308357597|gb|EFP46448.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis
           SUMu010]
 gi|308361539|gb|EFP50390.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis
           SUMu011]
 gi|308365150|gb|EFP54001.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis
           SUMu012]
 gi|323718788|gb|EGB27945.1| Holliday junction DNA helicase ruvB [Mycobacterium tuberculosis
           CDC1551A]
 gi|326904205|gb|EGE51138.1| Holliday junction DNA helicase ruvB [Mycobacterium tuberculosis
           W-148]
 gi|328458096|gb|AEB03519.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis KZN
           4207]
          Length = 344

 Score =  333 bits (853), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 165/330 (50%), Positives = 230/330 (69%), Gaps = 1/330 (0%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           DR+   +  V + D D+SL RPR+L EF GQ      L++ IE AK R    DH+L  GP
Sbjct: 6   DRDVSPALTVGEGDIDVSL-RPRSLREFIGQPRVREQLQLVIEGAKNRGGTPDHILLSGP 64

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKT+LA ++A ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++   E
Sbjct: 65  PGLGKTSLAMIIAAELGSSLRVTSGPALERAGDLAAMLSNLVEHDVLFIDEIHRIARPAE 124

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LY AMEDF++D++VG+GP A S+ + ++ FTL+ ATTR G LT PL+DRFG    ++F
Sbjct: 125 EMLYLAMEDFRVDVVVGKGPGATSIPLEVAPFTLVGATTRSGALTGPLRDRFGFTAHMDF 184

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           YE  +L+ ++ R A + G+ +  +A  EIA RSRGTPRIA RLLRRVRDFAEV     IT
Sbjct: 185 YEPAELERVLARSAGILGIELGADAGAEIARRSRGTPRIANRLLRRVRDFAEVRADGVIT 244

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           R++A AAL    +D++G D+LD   L+ + R+FGGGPVG+ T++  + E    +E++ EP
Sbjct: 245 RDVAKAALEVYDVDELGLDRLDRAVLSALTRSFGGGPVGVSTLAVAVGEEAATVEEVCEP 304

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++++ G + RTPRGR+   +AW HLG+  P
Sbjct: 305 FLVRAGMVARTPRGRVATALAWTHLGMTPP 334


>gi|325956130|ref|YP_004286740.1| Holliday junction DNA helicase RuvB [Lactobacillus acidophilus
           30SC]
 gi|325332695|gb|ADZ06603.1| Holliday junction DNA helicase RuvB [Lactobacillus acidophilus
           30SC]
 gi|327182938|gb|AEA31385.1| Holliday junction DNA helicase RuvB [Lactobacillus amylovorus GRL
           1118]
          Length = 338

 Score =  333 bits (853), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 167/320 (52%), Positives = 225/320 (70%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           S+E+A    LRP+TL+++ GQ      + ++I+AAK R EALDHVL  GPPGLGKTTLA 
Sbjct: 16  SEEEAMELSLRPQTLDQYLGQERVKKEMSIYIKAAKQRDEALDHVLLYGPPGLGKTTLAF 75

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           V+A ELGV+ +STSGP I KAGDL ALL++L+  DVLFIDEIHRL+  VEE+LY AMED+
Sbjct: 76  VIANELGVHLKSTSGPAIEKAGDLVALLSDLDPGDVLFIDEIHRLAKPVEEVLYSAMEDY 135

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            +D+++GEG +  +V + L  FTLI ATT  G L+ PL+DRFGI   + +Y +++L+ IV
Sbjct: 136 YIDIVIGEGQTTHAVHVPLPPFTLIGATTLAGQLSAPLRDRFGIVEHMQYYTVDELEKIV 195

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           QR + +   ++  EAA E+A RSRGTPR+A RLL+RVRDFAEV   KTI+    + AL +
Sbjct: 196 QRSSDVFHTSIAPEAAHELARRSRGTPRVANRLLKRVRDFAEVKGEKTISLATTENALKQ 255

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D  G DQ D + L  +   + GGPVGI T++A + E  + IE L EPY++Q GFI  
Sbjct: 256 LQVDDEGLDQTDRKLLRTMIEGYNGGPVGIRTLAANIGEDMETIESLYEPYLLQHGFILL 315

Query: 313 TPRGRLLMPIAWQHLGIDIP 332
           TPRGR++   A+  LG+ IP
Sbjct: 316 TPRGRMVTDKAYLQLGLPIP 335


>gi|304383686|ref|ZP_07366145.1| crossover junction ATP-dependent DNA helicase RuvB [Prevotella
           marshii DSM 16973]
 gi|304335210|gb|EFM01481.1| crossover junction ATP-dependent DNA helicase RuvB [Prevotella
           marshii DSM 16973]
          Length = 360

 Score =  333 bits (853), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 166/313 (53%), Positives = 223/313 (71%), Gaps = 1/313 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP +  +F+GQ +  +NL+VF+EAAK R E LDH L  GPPGLGKTTL+ ++A ELG  
Sbjct: 38  LRPLSFGDFSGQQKVVNNLEVFVEAAKYRGEPLDHTLLHGPPGLGKTTLSNIIANELGSG 97

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS +VEE LY AMED+++D+M+ +G
Sbjct: 98  LKITSGPVLDKPGDLAGILTSLEKNDVLFIDEIHRLSPVVEEYLYSAMEDYRIDIMIDKG 157

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSARS++I+L+ FTL+ ATTR GLLT PL+ RF I + L +Y+ + L  I+ R A + G+
Sbjct: 158 PSARSIQIDLNPFTLVGATTRSGLLTAPLRARFTINLHLEYYDADTLTQIILRSAGILGV 217

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  +AA EIA RSRGTPRIA  LLRRVRDFA+V     I   I   AL  L ID+ G D
Sbjct: 218 PIAPDAAVEIAGRSRGTPRIANGLLRRVRDFAQVKGDGRIDIGITRLALSALNIDQYGLD 277

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           ++D + L  I   F GGPVG+ TI+  + E    +E++ EP++I +GFI+RTPRGR++  
Sbjct: 278 EIDNKILLTIIDKFKGGPVGVSTIATAIGEDSGTVEEVYEPFLIMEGFIKRTPRGRVVTE 337

Query: 322 IAWQHLGIDIPHR 334
           +A++H G D P+R
Sbjct: 338 LAYRHFGRD-PYR 349


>gi|291276417|ref|YP_003516189.1| Holliday junction DNA helicase [Helicobacter mustelae 12198]
 gi|290963611|emb|CBG39443.1| holliday junction DNA helicase [Helicobacter mustelae 12198]
          Length = 331

 Score =  333 bits (853), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 164/322 (50%), Positives = 229/322 (71%), Gaps = 6/322 (1%)

Query: 2   MDREGLLSRNVSQEDADI-----SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH 56
           M+R  L SR V+ E  D      + LRP   E++ GQ     NL VFI A+  R E LDH
Sbjct: 1   MERHSLDSRLVNVERIDFEKKEENSLRPSAWEDYIGQERIKKNLDVFIRASLKRGECLDH 60

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHR 116
           +LF GPPGLGKTTL+ ++A ++G   + T+ P+I K+GDLAA++TNL + ++LFIDEIHR
Sbjct: 61  ILFFGPPGLGKTTLSHIIANQMGSMIKVTAAPMIEKSGDLAAIMTNLREGEILFIDEIHR 120

Query: 117 LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
           LS  +EEILYPAMEDF+LD+++G GP+A+++KI+L RFTLI ATTR G+L+NPL+DRFG+
Sbjct: 121 LSPAIEEILYPAMEDFRLDIIIGSGPAAQTIKIDLPRFTLIGATTRAGMLSNPLRDRFGM 180

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
             R+ FY I++L  I++R AK     +   +A EIA RSRGTPRIA RLL+RVRDF+E+ 
Sbjct: 181 SFRMEFYSIQELSLIIERAAKRLDKRIEKNSADEIAKRSRGTPRIALRLLKRVRDFSEIK 240

Query: 237 HAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAI 296
           + + I+      AL  L I+ +GFD LDLRYL ++ R+  G P+G+ TI+A +SE    I
Sbjct: 241 NEECISHATTIYALNELGINTLGFDALDLRYLDIL-RSAKGKPIGLSTIAAAMSEDEGTI 299

Query: 297 EDLIEPYMIQQGFIQRTPRGRL 318
           E+ IEPY++  G++++T RGR+
Sbjct: 300 EEAIEPYLLANGYLEKTARGRI 321


>gi|283956748|ref|ZP_06374224.1| holliday junction DNA helicase RuvB [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|283791723|gb|EFC30516.1| holliday junction DNA helicase RuvB [Campylobacter jejuni subsp.
           jejuni 1336]
          Length = 335

 Score =  332 bits (852), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 158/309 (51%), Positives = 224/309 (72%), Gaps = 1/309 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP   + + GQ     NL VFI AAK R E LDH+LF GP GLGKTTLA +++ E+G N
Sbjct: 20  LRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMGAN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            ++T+ P+I K+GDLAA+LTNL + D+LFIDEIHRLS  +EE+LYPAMED++LD+++G G
Sbjct: 80  IKTTAAPMIEKSGDLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+A+++KI+L +FTLI ATTR G+L+NPL+DRFG+  RL FY+  +L  I+Q+ A     
Sbjct: 140 PAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
              ++AA EIA RSR TPRIA RLL+RVRDFA+V   + IT + A+ AL  L ++++GFD
Sbjct: 200 TCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIITEKRANEALNSLGVNELGFD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +DLRYL ++       P+G+ +I+A LSE  + IED+IEPY++  G+I+RT +GR+   
Sbjct: 260 AMDLRYLELLTAA-KQKPIGLASIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIAST 318

Query: 322 IAWQHLGID 330
            ++  L ++
Sbjct: 319 KSYSALKLN 327


>gi|157415600|ref|YP_001482856.1| Holliday junction DNA helicase B [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|172047177|sp|A8FN42|RUVB_CAMJ8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|157386564|gb|ABV52879.1| holliday junction DNA helicase RuvB [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|307748243|gb|ADN91513.1| Holliday junction ATP-dependent DNA helicase ruvB [Campylobacter
           jejuni subsp. jejuni M1]
 gi|315931420|gb|EFV10388.1| holliday junction DNA helicase RuvB [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 335

 Score =  332 bits (852), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 158/309 (51%), Positives = 224/309 (72%), Gaps = 1/309 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP   + + GQ     NL VFI AAK R E LDH+LF GP GLGKTTLA +++ E+G N
Sbjct: 20  LRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMGAN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            ++T+ P+I K+GDLAA+LTNL + D+LFIDEIHRLS  +EE+LYPAMED++LD+++G G
Sbjct: 80  IKTTAAPMIEKSGDLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+A+++KI+L +FTLI ATTR G+L+NPL+DRFG+  RL FY+  +L  I+Q+ A     
Sbjct: 140 PAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
              ++AA EIA RSR TPRIA RLL+RVRDFA+V   + IT + A+ AL  L ++++GFD
Sbjct: 200 TCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIITEKRANEALNSLGVNELGFD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +DLRYL ++       P+G+ +I+A LSE  + IED+IEPY++  G+I+RT +GR+   
Sbjct: 260 AMDLRYLELLTAA-KQKPIGLASIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIASA 318

Query: 322 IAWQHLGID 330
            ++  L ++
Sbjct: 319 KSYSALKLN 327


>gi|315638163|ref|ZP_07893345.1| crossover junction ATP-dependent DNA helicase RuvB [Campylobacter
           upsaliensis JV21]
 gi|315481699|gb|EFU72321.1| crossover junction ATP-dependent DNA helicase RuvB [Campylobacter
           upsaliensis JV21]
          Length = 350

 Score =  332 bits (852), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 165/330 (50%), Positives = 234/330 (70%), Gaps = 2/330 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           +MDR   + +  S E  + SL RP   + + GQ     NL +FI AAK R E LDH+LF 
Sbjct: 15  IMDRIVEIEKFSSDETYESSL-RPSNFDGYIGQDNIKKNLHIFINAAKKRGECLDHILFS 73

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GP GLGKTTLA ++A E+G N ++T+ P+I K+GDLAA+LTNL + DVLFIDEIHRLS  
Sbjct: 74  GPAGLGKTTLANIIATEMGANIKTTAAPMIEKSGDLAAILTNLSEGDVLFIDEIHRLSPA 133

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EE+LYPAMEDF+LD+++G GP+A+++KI+L +FTLI ATTR G+L+NPL+DRFG+  RL
Sbjct: 134 IEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRL 193

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY+ E+L  I+Q+ A        ++AA EIA RSR TPRIA RLL+RVRDFA+V   + 
Sbjct: 194 EFYKNEELALILQKAALKLNKNCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEN 253

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I+   A  AL  L ++++GFD +DLRYL ++  +  G  +G+ +I+A LSE  + +ED+I
Sbjct: 254 ISLVRAYEALNSLGVNELGFDSMDLRYLELLT-SAKGKAMGLASIAAALSEDENTVEDVI 312

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           EPY++  G+I+RT +GR+    ++  L ++
Sbjct: 313 EPYLLANGYIERTAKGRIASIKSYHTLKLN 342


>gi|194333365|ref|YP_002015225.1| Holliday junction DNA helicase RuvB [Prosthecochloris aestuarii DSM
           271]
 gi|238693320|sp|B4S5I1|RUVB_PROA2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|194311183|gb|ACF45578.1| Holliday junction DNA helicase RuvB [Prosthecochloris aestuarii DSM
           271]
          Length = 343

 Score =  332 bits (852), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 167/309 (54%), Positives = 222/309 (71%), Gaps = 1/309 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  LE+F+GQ     NL++FI AA+ R EALDHVLF GPPGLGKTTLA ++A ELG  
Sbjct: 21  IRPSRLEDFSGQQRLTDNLRIFIAAARQRGEALDHVLFSGPPGLGKTTLAHIIASELGGG 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGP++ K G+LA LLT+L+  DVLFIDEIHRL+  VEE LY AMEDF++D+++  G
Sbjct: 81  LKITSGPLLDKPGNLAGLLTSLQKGDVLFIDEIHRLTPAVEEYLYSAMEDFRIDILLDSG 140

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSARSV++ L  FTL+ ATTR GLLT+PL+ RFGI  RL++Y  E L+ I+ R A + G+
Sbjct: 141 PSARSVQLRLEPFTLVGATTRAGLLTSPLRARFGISNRLDYYSAELLQRIIIRTATILGI 200

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
           A+  +AA EIA RSRGTPRIA RLL+R RDF +VA +  I+ E+A   L  L ID+ G D
Sbjct: 201 AIDQQAADEIARRSRGTPRIANRLLKRARDFTQVAQSSVISLELARKTLAALEIDEDGLD 260

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + +  + + F GGPVGI +++  + E  D IE++ EPY+IQ GFI RTPRGR+   
Sbjct: 261 DMDKKIILSLLQKFDGGPVGISSLAVSVGEEHDTIEEVYEPYLIQTGFIARTPRGRVATK 320

Query: 322 IAW-QHLGI 329
            A+ + LG+
Sbjct: 321 NAYRKFLGV 329


>gi|257866611|ref|ZP_05646264.1| holliday junction DNA helicase RuvB [Enterococcus casseliflavus
           EC30]
 gi|257872873|ref|ZP_05652526.1| holliday junction DNA helicase RuvB [Enterococcus casseliflavus
           EC10]
 gi|257876216|ref|ZP_05655869.1| holliday junction DNA helicase RuvB [Enterococcus casseliflavus
           EC20]
 gi|257800569|gb|EEV29597.1| holliday junction DNA helicase RuvB [Enterococcus casseliflavus
           EC30]
 gi|257807037|gb|EEV35859.1| holliday junction DNA helicase RuvB [Enterococcus casseliflavus
           EC10]
 gi|257810382|gb|EEV39202.1| holliday junction DNA helicase RuvB [Enterococcus casseliflavus
           EC20]
          Length = 333

 Score =  332 bits (852), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 164/327 (50%), Positives = 220/327 (67%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD   +   +  QE+     LRP+TL ++ GQ +    L ++I+AAK R EALDHVL  G
Sbjct: 1   MDERIVSPESTEQEEIIEKSLRPQTLAQYIGQDKVKQELSIYIQAAKNREEALDHVLLYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTT+A V+A E+ V  ++TSGP I K GDL A+L  L+  DVLFIDEIHRL  + 
Sbjct: 61  PPGLGKTTMAMVIANEMQVQIKTTSGPAIEKPGDLIAILNELQPGDVLFIDEIHRLPRVA 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMEDF +D+MVG+G +A  V   L  FTL+ ATTR G+L+ PL+DRFGI   + 
Sbjct: 121 EEMLYSAMEDFYVDIMVGQGTTAHPVHFPLPPFTLVGATTRAGMLSAPLRDRFGIISHMQ 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +YE  DLK IVQR A +    + +E A EIA RSRGTPRIA RLL+RVRD+A+V     I
Sbjct: 181 YYEDHDLKEIVQRTASIFETDIVEEGAIEIARRSRGTPRIANRLLKRVRDYAQVQADGLI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
            R +AD AL  LA+D  G D +D + +  +   + GGPVG+ TI+  + E  + +ED+ E
Sbjct: 241 DRTVADQALALLAVDHAGLDYIDQKLIRTMIELYQGGPVGLSTIAVNIGEETETVEDMYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLG 328
           P++IQ+GF++RT RGR+  P+A+ H G
Sbjct: 301 PFLIQKGFLKRTSRGRIATPLAYDHFG 327


>gi|323341473|ref|ZP_08081714.1| crossover junction ATP-dependent DNA helicase RuvB [Lactobacillus
           ruminis ATCC 25644]
 gi|323091084|gb|EFZ33715.1| crossover junction ATP-dependent DNA helicase RuvB [Lactobacillus
           ruminis ATCC 25644]
          Length = 335

 Score =  332 bits (852), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 167/319 (52%), Positives = 224/319 (70%), Gaps = 1/319 (0%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           + E AD++L RP+TL+ + GQ +    L V+I AAK R E+LDHVL  GPPGLGKTTLA 
Sbjct: 15  ASEQADLTL-RPKTLKTYIGQEKIKRELSVYIAAAKQREESLDHVLLYGPPGLGKTTLAC 73

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++A E+ V  ++T+GP I K GDL ALL  LE  DVLFIDEIHRL   VEEILY AMEDF
Sbjct: 74  IIANEMQVGIKTTTGPAIEKPGDLVALLNELEPGDVLFIDEIHRLPKNVEEILYSAMEDF 133

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            +D++VG+  +A  V+  L  FTL+ ATTR G+L+ PL+ RFGI   +N+YE ++L  IV
Sbjct: 134 YIDIIVGQDSAAHPVRFPLPPFTLVGATTRAGMLSAPLRARFGIVGHMNYYEDDELTRIV 193

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           QR A +    ++ + A EIA RSRGTPR+A RLL+RVRDFAEVAH   I  +I   AL  
Sbjct: 194 QRSAAVFAAQISADGAFEIARRSRGTPRVANRLLKRVRDFAEVAHKDEIDTQIVCYALDL 253

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D+ G D  D R L  +   +GGGPVG+ T++A + E  + + D+IEPY++Q+GFI+R
Sbjct: 254 LRVDQCGLDDTDRRLLRTMIELYGGGPVGLATLAANIGEETETVADMIEPYLMQRGFIKR 313

Query: 313 TPRGRLLMPIAWQHLGIDI 331
           TPRGR++ P+A++HL + I
Sbjct: 314 TPRGRMVTPLAYKHLNLKI 332


>gi|319442164|ref|ZP_07991320.1| Holliday junction DNA helicase RuvB [Corynebacterium variabile DSM
           44702]
          Length = 365

 Score =  332 bits (852), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 162/320 (50%), Positives = 225/320 (70%), Gaps = 1/320 (0%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
            +D+++SL RPR+L EF GQ +    L + +  A+AR    DHVL  GPPGLGKTT+A +
Sbjct: 46  DDDSELSL-RPRSLTEFIGQPKVRGQLDLVLGGARARGVVPDHVLLAGPPGLGKTTMAMI 104

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +A+EL  + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++   EE+LY AMEDF+
Sbjct: 105 IAQELSTSLRMTSGPALERAGDLAAMLSNLMEGDVLFIDEIHRMARPAEEMLYMAMEDFR 164

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           +D++VG+GP A S+ I L  FTL+ ATTR G+LT PL+DRFG   ++ FY+  DL  +V 
Sbjct: 165 IDVIVGKGPGATSIPIELPPFTLVGATTRAGMLTGPLRDRFGFTAQMEFYDTADLTAVVT 224

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A + G+ +T +AA EIA RSRGTPRIA RLLRRVRD+A+V     IT ++A AALL  
Sbjct: 225 RAASILGVDITGDAAAEIASRSRGTPRIANRLLRRVRDYADVRADGAITVDVARAALLVF 284

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D++G D+LD   L  + +  GGGPVG+ T++  + E    +E++ EPY+++ G I RT
Sbjct: 285 DVDELGLDRLDRAVLGSLVKTHGGGPVGVNTLAVAVGEESTTVEEVCEPYLVRAGMIART 344

Query: 314 PRGRLLMPIAWQHLGIDIPH 333
            RGR+  P AW+HLG++ P 
Sbjct: 345 SRGRVATPSAWRHLGLEPPE 364


>gi|331701281|ref|YP_004398240.1| Holliday junction ATP-dependent DNA helicase ruvB [Lactobacillus
           buchneri NRRL B-30929]
 gi|329128624|gb|AEB73177.1| Holliday junction ATP-dependent DNA helicase ruvB [Lactobacillus
           buchneri NRRL B-30929]
          Length = 342

 Score =  332 bits (852), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 161/311 (51%), Positives = 217/311 (69%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPR L E+ GQ +  + L+V+I+AAK R E+LDHVL  GPPGLGKTTLA V+A E+GVN
Sbjct: 26  LRPRVLSEYIGQDDVKNELRVYIKAAKQREESLDHVLLYGPPGLGKTTLAMVIANEMGVN 85

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R+TSGP I K GDL +LL  L+  DVLFIDEIHRL  +VEE+LY AMEDF +D++VG+G
Sbjct: 86  IRTTSGPAIDKPGDLLSLLNELQPGDVLFIDEIHRLPKVVEEMLYSAMEDFFVDIIVGQG 145

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
             A  +   L  FTLI ATT+ G+L+ PL+DRFGI   +N+Y   DL+ IV+R A +  +
Sbjct: 146 SGAHPIHFPLPPFTLIGATTQAGMLSAPLRDRFGIVEHMNYYNATDLEDIVRRTADIFQI 205

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + D  A EIA+RSRGTPR+A RLL+RVRDFA+V+    +   I   AL +L +D +G D
Sbjct: 206 DIEDSGAHEIALRSRGTPRVANRLLKRVRDFAQVSDKDQVDLSIVRYALAKLKVDDLGLD 265

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             DL+ LT + + + GGPVG+ T++A + E  D I ++ EPY++Q G I+RT RGR++ P
Sbjct: 266 ATDLKLLTTMIKYYDGGPVGLNTLAANIGEETDTIAEMYEPYLLQIGLIKRTARGRIVTP 325

Query: 322 IAWQHLGIDIP 332
             + HL   +P
Sbjct: 326 KGYAHLSYPMP 336


>gi|70726281|ref|YP_253195.1| Holliday junction DNA helicase RuvB [Staphylococcus haemolyticus
           JCSC1435]
 gi|97190346|sp|Q4L6Y6|RUVB_STAHJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|68447005|dbj|BAE04589.1| holliday junction DNA helicase [Staphylococcus haemolyticus
           JCSC1435]
          Length = 331

 Score =  332 bits (852), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 165/328 (50%), Positives = 226/328 (68%), Gaps = 3/328 (0%)

Query: 1   MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M DR  ++ + +  E+    L LRP  L+++ GQ    +NL+VFI+AAK R E LDHVL 
Sbjct: 1   MDDR--MVDQALHSEETSFELSLRPTMLKQYIGQSSIKNNLEVFIKAAKLREEPLDHVLL 58

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTL+ ++A E+ VN R+ SGP + + GDLAA+L+ L+  DVLFIDEIHRLS 
Sbjct: 59  FGPPGLGKTTLSNIIANEMNVNIRTVSGPSLDRPGDLAAILSGLQPGDVLFIDEIHRLSS 118

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEE+LY AMEDF +D+++G+G  ARS++I+L  FTL+ ATTR G LT PL+DRFG+ +R
Sbjct: 119 TVEEVLYSAMEDFFIDIIIGKGDEARSIRIDLPPFTLVGATTRAGSLTGPLRDRFGVHLR 178

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y   DLK I+ R A++    + DE+A E+A RSRGTPR+A RLL+RVRDF +V   +
Sbjct: 179 LEYYNENDLKEIIIRTAEVLNTKIDDESATELAKRSRGTPRVANRLLKRVRDFQQVNEDE 238

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  E    AL  L +D  G D +D + +  I   + GGPVG++TI+  + E R  IED+
Sbjct: 239 QIYIETTKQALQLLQVDAEGLDYIDHKMMRCIINQYDGGPVGLDTIAVSIGEERITIEDV 298

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHL 327
            EP++IQ+GFI+RTPRGR     A++H 
Sbjct: 299 YEPFLIQKGFIERTPRGRKATAFAYEHF 326


>gi|306785394|ref|ZP_07423716.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis
           SUMu003]
 gi|306789994|ref|ZP_07428316.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis
           SUMu004]
 gi|306794075|ref|ZP_07432377.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis
           SUMu005]
 gi|306798489|ref|ZP_07436791.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis
           SUMu006]
 gi|306804352|ref|ZP_07441020.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis
           SUMu008]
 gi|306807608|ref|ZP_07444276.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis
           SUMu007]
 gi|306969810|ref|ZP_07482471.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis
           SUMu009]
 gi|308329913|gb|EFP18764.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis
           SUMu003]
 gi|308333528|gb|EFP22379.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis
           SUMu004]
 gi|308337555|gb|EFP26406.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis
           SUMu005]
 gi|308341222|gb|EFP30073.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis
           SUMu006]
 gi|308346004|gb|EFP34855.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis
           SUMu007]
 gi|308349029|gb|EFP37880.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis
           SUMu008]
 gi|308352727|gb|EFP41578.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis
           SUMu009]
          Length = 344

 Score =  332 bits (851), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 165/330 (50%), Positives = 229/330 (69%), Gaps = 1/330 (0%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           DR    +  V + D D+SL RPR+L EF GQ      L++ IE AK R    DH+L  GP
Sbjct: 6   DRNVSPALTVGEGDIDVSL-RPRSLREFIGQPRVREQLQLVIEGAKNRGGTPDHILLSGP 64

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKT+LA ++A ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++   E
Sbjct: 65  PGLGKTSLAMIIAAELGSSLRVTSGPALERAGDLAAMLSNLVEHDVLFIDEIHRIARPAE 124

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LY AMEDF++D++VG+GP A S+ + ++ FTL+ ATTR G LT PL+DRFG    ++F
Sbjct: 125 EMLYLAMEDFRVDVVVGKGPGATSIPLEVAPFTLVGATTRSGALTGPLRDRFGFTAHMDF 184

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           YE  +L+ ++ R A + G+ +  +A  EIA RSRGTPRIA RLLRRVRDFAEV     IT
Sbjct: 185 YEPAELERVLARSAGILGIELGADAGAEIARRSRGTPRIANRLLRRVRDFAEVRADGVIT 244

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           R++A AAL    +D++G D+LD   L+ + R+FGGGPVG+ T++  + E    +E++ EP
Sbjct: 245 RDVAKAALEVYDVDELGLDRLDRAVLSALTRSFGGGPVGVSTLAVAVGEEAATVEEVCEP 304

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++++ G + RTPRGR+   +AW HLG+  P
Sbjct: 305 FLVRAGMVARTPRGRVATALAWTHLGMTPP 334


>gi|227877606|ref|ZP_03995660.1| crossover junction endoribonuclease subunit B [Lactobacillus
           crispatus JV-V01]
 gi|256849060|ref|ZP_05554493.1| Holliday junction DNA helicase B [Lactobacillus crispatus MV-1A-US]
 gi|262047542|ref|ZP_06020497.1| Holliday junction DNA helicase RuvB [Lactobacillus crispatus
           MV-3A-US]
 gi|227862800|gb|EEJ70265.1| crossover junction endoribonuclease subunit B [Lactobacillus
           crispatus JV-V01]
 gi|256713836|gb|EEU28824.1| Holliday junction DNA helicase B [Lactobacillus crispatus MV-1A-US]
 gi|260572118|gb|EEX28683.1| Holliday junction DNA helicase RuvB [Lactobacillus crispatus
           MV-3A-US]
          Length = 339

 Score =  332 bits (851), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 167/322 (51%), Positives = 226/322 (70%), Gaps = 1/322 (0%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           N  ++  ++SL RP+TL+++ GQ      + ++I+AA+ R EALDHVL  GPPGLGKTTL
Sbjct: 16  NPEEQQMELSL-RPQTLDQYLGQKRVKKEMSIYIKAARQRDEALDHVLLYGPPGLGKTTL 74

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           A V+A ELGV+ +STSGP I KAGDL ALL++L+  DVLFIDEIHRL+  VEE+LY AME
Sbjct: 75  AFVIANELGVHLKSTSGPAIEKAGDLVALLSDLDPGDVLFIDEIHRLAKPVEEVLYSAME 134

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           D+ +D+++GEG +  +V + L  FTLI ATT  G L+ PL+DRFGI   + +Y I++L+ 
Sbjct: 135 DYYIDIVIGEGQTTHAVHVPLPPFTLIGATTLAGQLSAPLRDRFGIVEHMQYYTIDELEQ 194

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           IV R + +   ++  EAA E+A RSRGTPR+A RLL+RVRDFAEV   KTI+ E  + AL
Sbjct: 195 IVLRSSDVFHTSIAPEAAHELARRSRGTPRVANRLLKRVRDFAEVKGEKTISLETTEGAL 254

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
            +L +D  G DQ D R L  +   + GGPVGI T++A + E  + IE L EPY++Q GFI
Sbjct: 255 KQLQVDDEGLDQTDRRLLRTMIEGYNGGPVGIRTLAANVGEDMETIESLYEPYLLQHGFI 314

Query: 311 QRTPRGRLLMPIAWQHLGIDIP 332
             TPRGR++   A+  LG+ IP
Sbjct: 315 LLTPRGRMVTDKAYLQLGLPIP 336


>gi|57238406|ref|YP_179537.1| Holliday junction DNA helicase B [Campylobacter jejuni RM1221]
 gi|148926717|ref|ZP_01810397.1| holliday junction DNA helicase [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|205356192|ref|ZP_03222959.1| holliday junction DNA helicase [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|73621849|sp|Q5HT48|RUVB_CAMJR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|57167210|gb|AAW35989.1| Holliday junction DNA helicase RuvB [Campylobacter jejuni RM1221]
 gi|145845081|gb|EDK22177.1| holliday junction DNA helicase [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|205346035|gb|EDZ32671.1| holliday junction DNA helicase [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|315058836|gb|ADT73165.1| Holliday junction DNA helicase RuvB [Campylobacter jejuni subsp.
           jejuni S3]
          Length = 335

 Score =  332 bits (851), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 157/309 (50%), Positives = 224/309 (72%), Gaps = 1/309 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP   + + GQ     NL +FI AAK R E LDH+LF GP GLGKTTLA +++ E+G N
Sbjct: 20  LRPSNFDGYIGQESIKKNLNIFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMGAN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            ++T+ P+I K+GDLAA+LTNL + D+LFIDEIHRLS  +EE+LYPAMED++LD+++G G
Sbjct: 80  IKTTAAPMIEKSGDLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+A+++KI+L +FTLI ATTR G+L+NPL+DRFG+  RL FY+  +L  I+Q+ A     
Sbjct: 140 PAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
              ++AA EIA RSR TPRIA RLL+RVRDFA+V   + IT + A+ AL  L ++++GFD
Sbjct: 200 TCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIITEKRANEALNSLGVNELGFD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +DLRYL ++       P+G+ +I+A LSE  + IED+IEPY++  G+I+RT +GR+   
Sbjct: 260 AMDLRYLELLTAA-KQKPIGLASIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIASA 318

Query: 322 IAWQHLGID 330
            ++  L ++
Sbjct: 319 KSYSALKLN 327


>gi|220907910|ref|YP_002483221.1| Holliday junction DNA helicase RuvB [Cyanothece sp. PCC 7425]
 gi|254767423|sp|B8HY57|RUVB_CYAP4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|219864521|gb|ACL44860.1| Holliday junction DNA helicase RuvB [Cyanothece sp. PCC 7425]
          Length = 370

 Score =  332 bits (851), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 171/330 (51%), Positives = 228/330 (69%), Gaps = 2/330 (0%)

Query: 5   EGLLSRNVSQED--ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           +GLL+  VS E+  +    +RP+ L ++ GQ E    L++ I+AA++R E LDH+L  GP
Sbjct: 34  QGLLTAEVSPEERLSRTDDIRPQRLADYVGQKELKEVLQIAIQAAQSRREPLDHLLLYGP 93

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTT++ ++A E+GV+ + TS P + +  D+  LL NL+  DVLFIDEIHRL+ + E
Sbjct: 94  PGLGKTTISLILAAEMGVSCKVTSAPALERPRDIVGLLVNLKPGDVLFIDEIHRLARMTE 153

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMEDF+LD+ +G+G SAR+  + L  FTL+ ATTRVG LT+PL+DRFG+  RL F
Sbjct: 154 ELLYPAMEDFRLDITIGKGQSARTRSLPLPPFTLVGATTRVGSLTSPLRDRFGLIQRLRF 213

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           YE E+L  I+ R A L    +T  AA EIA RSRGTPRIA RLL+RVRDFAEV  A TIT
Sbjct: 214 YEPEELSQIILRTASLLKTELTPSAALEIARRSRGTPRIANRLLKRVRDFAEVKAAGTIT 273

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             IA  AL    +D  G D  D R LT++  ++GGGPVG+ETI+A   E    IE++ EP
Sbjct: 274 ETIASEALQLFNVDPCGLDWTDRRLLTVMIEHYGGGPVGLETIAAATGEEAQTIEEVYEP 333

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           Y++Q G++ RTPRGR+    AW+HLG   P
Sbjct: 334 YLLQIGYLNRTPRGRVATLAAWKHLGYTPP 363


>gi|170017581|ref|YP_001728500.1| Holliday junction DNA helicase RuvB [Leuconostoc citreum KM20]
 gi|169804438|gb|ACA83056.1| Holliday junction DNA helicase RuvB [Leuconostoc citreum KM20]
          Length = 352

 Score =  332 bits (850), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 166/319 (52%), Positives = 222/319 (69%), Gaps = 1/319 (0%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           N +++  ++SL RP+ L E+ GQ      L V+I AAK R EALDHVL  GPPGLGKTTL
Sbjct: 29  NEAEQHDELSL-RPQFLREYIGQAALKEELSVYISAAKQREEALDHVLLFGPPGLGKTTL 87

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           A ++A E+GV+ ++TSGP I K GDL ALL  LE  D+LFIDEIHRL   VEEI+Y AME
Sbjct: 88  AMIIANEMGVHIKTTSGPAIEKPGDLVALLNELEPGDILFIDEIHRLPTNVEEIMYSAME 147

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           D+ +D+MVG+GP+AR+V   L  FTLI ATTR G+L+ PL+DRFGI   +++Y  E+L+ 
Sbjct: 148 DYFVDIMVGQGPTARAVHFPLPPFTLIGATTRPGMLSKPLRDRFGIMSAMSYYTPEELQE 207

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           IV R + +    +  E A EIA+RSRGTPRIA RLL+RVRDFA+V     I R I D AL
Sbjct: 208 IVVRSSDIFKAPIKPEGAYEIALRSRGTPRIANRLLKRVRDFAQVQGKAAIDRVIVDIAL 267

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
            +L +D  G D+ D + L  +   + GGPVG+ T++A + E  + +E ++EPY++Q GF+
Sbjct: 268 DKLRVDNRGLDETDHKLLDTMITYYQGGPVGLNTLAANIGEEAETLESMVEPYLLQIGFL 327

Query: 311 QRTPRGRLLMPIAWQHLGI 329
           QRTPRGR++   A+ HL I
Sbjct: 328 QRTPRGRVVTEAAYAHLNI 346


>gi|325567286|ref|ZP_08143953.1| crossover junction ATP-dependent DNA helicase RuvB [Enterococcus
           casseliflavus ATCC 12755]
 gi|325158719|gb|EGC70865.1| crossover junction ATP-dependent DNA helicase RuvB [Enterococcus
           casseliflavus ATCC 12755]
          Length = 333

 Score =  332 bits (850), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 163/327 (49%), Positives = 220/327 (67%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD   +   +  QE+     LRP+TL ++ GQ +    L ++I+AAK R EALDHVL  G
Sbjct: 1   MDERIVSPESTEQEEIIEKSLRPQTLAQYIGQDKVKQELSIYIQAAKNREEALDHVLLYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTT+A V+A E+ V  ++TSGP + K GDL A+L  L+  DVLFIDEIHRL  + 
Sbjct: 61  PPGLGKTTMAMVIANEMQVQIKTTSGPAVEKPGDLIAILNELQPGDVLFIDEIHRLPRVA 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMEDF +D+MVG+G +A  V   L  FTL+ ATTR G+L+ PL+DRFGI   + 
Sbjct: 121 EEMLYSAMEDFYVDIMVGQGTTAHPVHFPLPPFTLVGATTRAGMLSAPLRDRFGIISHMQ 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +YE  DLK IVQR A +    + +E A EIA RSRGTPRIA RLL+RVRD+A+V     I
Sbjct: 181 YYEDHDLKEIVQRTASIFETDIVEEGAIEIARRSRGTPRIANRLLKRVRDYAQVQADGLI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
            R +AD AL  LA+D  G D +D + +  +   + GGPVG+ TI+  + E  + +ED+ E
Sbjct: 241 DRTVADQALALLAVDHAGLDYIDQKLIRTMIELYQGGPVGLSTIAVNIGEETETVEDMYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLG 328
           P++IQ+GF++RT RGR+  P+A+ H G
Sbjct: 301 PFLIQKGFLKRTSRGRIATPLAYDHFG 327


>gi|296111817|ref|YP_003622199.1| holliday junction DNA helicase RuvB [Leuconostoc kimchii IMSNU
           11154]
 gi|295833349|gb|ADG41230.1| holliday junction DNA helicase RuvB [Leuconostoc kimchii IMSNU
           11154]
          Length = 352

 Score =  332 bits (850), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 161/308 (52%), Positives = 216/308 (70%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E+ GQ      L V+I AAK R EALDHVL  GPPGLGKTTLA ++A E+ V+
Sbjct: 39  LRPQFLREYIGQSALKEELDVYISAAKQREEALDHVLLFGPPGLGKTTLAMIIANEMAVH 98

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            ++TSGP I K GDL ALL  LE  D+LFIDEIHRL   +EEI+Y AMED+ +D+MVG+G
Sbjct: 99  IKTTSGPAIEKPGDLVALLNELEPGDILFIDEIHRLPTNIEEIMYSAMEDYFVDIMVGQG 158

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+AR+V   L  FTLI ATTR G+L+ PL+DRFGI   + +Y  E+L+ IV R A +   
Sbjct: 159 PTARAVHFPLPPFTLIGATTRPGMLSKPLRDRFGIINSMAYYTPEELQEIVVRSADIFHA 218

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  + A E+A+RSRGTPRIA RLL+RVRDFA+V     I + I D AL +L +D  G D
Sbjct: 219 PIKPQGAYEVALRSRGTPRIANRLLKRVRDFAQVQGKDAIDKGIVDIALNKLRVDNRGLD 278

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           + D ++L  +   + GGPVG+ TI+A + E  + +E ++EPY++Q GF+QRTPRGR++  
Sbjct: 279 ETDHKFLGTMIDYYNGGPVGLNTIAANIGEEAETLESMVEPYLLQIGFLQRTPRGRVVTE 338

Query: 322 IAWQHLGI 329
           +A+QHL +
Sbjct: 339 VAYQHLKV 346


>gi|293381580|ref|ZP_06627567.1| Holliday junction DNA helicase RuvB [Lactobacillus crispatus 214-1]
 gi|290921850|gb|EFD98865.1| Holliday junction DNA helicase RuvB [Lactobacillus crispatus 214-1]
          Length = 336

 Score =  332 bits (850), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 167/322 (51%), Positives = 226/322 (70%), Gaps = 1/322 (0%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           N  ++  ++SL RP+TL+++ GQ      + ++I+AA+ R EALDHVL  GPPGLGKTTL
Sbjct: 13  NPKEQQMELSL-RPQTLDQYLGQKRVKKEMSIYIKAARQRDEALDHVLLYGPPGLGKTTL 71

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           A V+A ELGV+ +STSGP I KAGDL ALL++L+  DVLFIDEIHRL+  VEE+LY AME
Sbjct: 72  AFVIANELGVHLKSTSGPAIEKAGDLVALLSDLDPGDVLFIDEIHRLAKPVEEVLYSAME 131

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           D+ +D+++GEG +  +V + L  FTLI ATT  G L+ PL+DRFGI   + +Y I++L+ 
Sbjct: 132 DYYIDIVIGEGQTTHAVHVPLPPFTLIGATTLAGQLSAPLRDRFGIVEHMQYYTIDELEQ 191

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           IV R + +   ++  EAA E+A RSRGTPR+A RLL+RVRDFAEV   KTI+ E  + AL
Sbjct: 192 IVLRSSDVFHTSIAPEAAHELARRSRGTPRVANRLLKRVRDFAEVKGEKTISLETTEGAL 251

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
            +L +D  G DQ D R L  +   + GGPVGI T++A + E  + IE L EPY++Q GFI
Sbjct: 252 KQLQVDDEGLDQTDRRLLRTMIEGYNGGPVGIRTLAANVGEDMETIESLYEPYLLQHGFI 311

Query: 311 QRTPRGRLLMPIAWQHLGIDIP 332
             TPRGR++   A+  LG+ IP
Sbjct: 312 LLTPRGRMVTDKAYLQLGLPIP 333


>gi|41407136|ref|NP_959972.1| Holliday junction DNA helicase B [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|118464703|ref|YP_882655.1| Holliday junction DNA helicase RuvB [Mycobacterium avium 104]
 gi|254775921|ref|ZP_05217437.1| Holliday junction DNA helicase RuvB [Mycobacterium avium subsp.
           avium ATCC 25291]
 gi|47606088|sp|P61535|RUVB_MYCPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|166231502|sp|A0QIB7|RUVB_MYCA1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|41395487|gb|AAS03355.1| RuvB [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118165990|gb|ABK66887.1| holliday junction DNA helicase RuvB [Mycobacterium avium 104]
          Length = 351

 Score =  332 bits (850), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 165/320 (51%), Positives = 225/320 (70%), Gaps = 1/320 (0%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
            + D D+SL RPR+L EF GQ      L++ IE AK R    DH+L  GPPGLGKT+LA 
Sbjct: 20  GEGDIDVSL-RPRSLREFIGQPRVREQLQLVIEGAKNRGGTPDHILLSGPPGLGKTSLAM 78

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++A ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++   EE+LY AMEDF
Sbjct: 79  IIAAELGSSLRVTSGPALERAGDLAAMLSNLVEHDVLFIDEIHRIARPAEEMLYLAMEDF 138

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           ++D++VG+GP A S+ + ++ FTL+ ATTR G LT PL+DRFG    ++FYE  +L+ ++
Sbjct: 139 RVDVVVGKGPGATSIPLEVAPFTLVGATTRSGALTGPLRDRFGFTAHMDFYEPAELQQVL 198

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R A + G+ +  EAA EIA RSRGTPRIA RLLRRVRDFAEV     ITR++A AAL  
Sbjct: 199 ARSAGILGIELGAEAAEEIARRSRGTPRIANRLLRRVRDFAEVRADGVITRDVAKAALAV 258

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
             +D++G D+LD   LT + R+FGGGPVG+ T++  + E    +E++ EP++++ G + R
Sbjct: 259 YDVDELGLDRLDRAVLTALTRSFGGGPVGVSTLAVAVGEEAATVEEVCEPFLVRAGMVAR 318

Query: 313 TPRGRLLMPIAWQHLGIDIP 332
           TPRGR+    AW HLG+  P
Sbjct: 319 TPRGRVATAQAWTHLGMVPP 338


>gi|302190966|ref|ZP_07267220.1| Holliday junction DNA helicase RuvB [Lactobacillus iners AB-1]
 gi|309805312|ref|ZP_07699363.1| Holliday junction DNA helicase RuvB [Lactobacillus iners LactinV
           09V1-c]
 gi|309805989|ref|ZP_07700015.1| Holliday junction DNA helicase RuvB [Lactobacillus iners LactinV
           03V1-b]
 gi|309809682|ref|ZP_07703538.1| Holliday junction DNA helicase RuvB [Lactobacillus iners SPIN
           2503V10-D]
 gi|312870741|ref|ZP_07730848.1| Holliday junction DNA helicase RuvB [Lactobacillus iners LEAF
           3008A-a]
 gi|312875204|ref|ZP_07735217.1| Holliday junction DNA helicase RuvB [Lactobacillus iners LEAF
           2053A-b]
 gi|329919592|ref|ZP_08276581.1| Holliday junction DNA helicase RuvB [Lactobacillus iners SPIN
           1401G]
 gi|308165388|gb|EFO67620.1| Holliday junction DNA helicase RuvB [Lactobacillus iners LactinV
           09V1-c]
 gi|308167592|gb|EFO69745.1| Holliday junction DNA helicase RuvB [Lactobacillus iners LactinV
           03V1-b]
 gi|308170042|gb|EFO72079.1| Holliday junction DNA helicase RuvB [Lactobacillus iners SPIN
           2503V10-D]
 gi|311089311|gb|EFQ47742.1| Holliday junction DNA helicase RuvB [Lactobacillus iners LEAF
           2053A-b]
 gi|311093753|gb|EFQ52090.1| Holliday junction DNA helicase RuvB [Lactobacillus iners LEAF
           3008A-a]
 gi|328937397|gb|EGG33819.1| Holliday junction DNA helicase RuvB [Lactobacillus iners SPIN
           1401G]
          Length = 334

 Score =  332 bits (850), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 168/334 (50%), Positives = 229/334 (68%), Gaps = 1/334 (0%)

Query: 2   MDREGLLS-RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M ++ L S  +   E A    LRP  L ++ GQ +  S + ++I+AAK R E+LDHVL  
Sbjct: 1   MTKDNLFSSESTPMEQATELSLRPSNLSQYIGQEKVKSEMAIYIKAAKQRDESLDHVLLY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTT+A V+A ELGV  +STSGP I KAGDL ALL+ L+  DVLFIDEIHRL+  
Sbjct: 61  GPPGLGKTTMAFVIANELGVTLKSTSGPAIDKAGDLVALLSELKPGDVLFIDEIHRLAKT 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILY AMEDF +D+MVGEG +A +V + LS FTLI ATTR G L+ PL+DRFGI   +
Sbjct: 121 VEEILYSAMEDFYVDIMVGEGSAAHAVHVPLSPFTLIGATTRAGQLSAPLRDRFGIVEHM 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y  ++L+ I++R +++    +  EAA E+A RSRGTPR+A RLL+R+RDFAEV    +
Sbjct: 181 QYYSEDELQQIIERSSRVLETGINIEAAHELARRSRGTPRVANRLLKRIRDFAEVNGETS 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I+      AL +L +D  G DQ+D + L ++   + GGPVGI+T++A + E  + I ++ 
Sbjct: 241 ISLLTTKHALAKLEVDDEGLDQIDRKILKIMINCYHGGPVGIKTLAANIGEDVETISEVY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           EPY++Q+GFI RTPRGR+    A+  LGI +  R
Sbjct: 301 EPYLLQKGFISRTPRGRVANAKAYVQLGISLDTR 334


>gi|58336748|ref|YP_193333.1| Holliday junction DNA helicase RuvB [Lactobacillus acidophilus
           NCFM]
 gi|227903309|ref|ZP_04021114.1| Holliday junction DNA helicase B [Lactobacillus acidophilus ATCC
           4796]
 gi|81311520|sp|Q5FLX2|RUVB_LACAC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|58254065|gb|AAV42302.1| helicase Holliday junction [Lactobacillus acidophilus NCFM]
 gi|227868938|gb|EEJ76359.1| Holliday junction DNA helicase B [Lactobacillus acidophilus ATCC
           4796]
          Length = 349

 Score =  331 bits (849), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 166/323 (51%), Positives = 226/323 (69%), Gaps = 1/323 (0%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           N  +E  ++SL RP+TL+++ GQ      + ++I+AA+ R EALDHVL  GPPGLGKTTL
Sbjct: 26  NPEEEQMELSL-RPQTLDQYLGQKRVKKEMSIYIKAARQRDEALDHVLLYGPPGLGKTTL 84

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           A V+A ELGV+ +STSGP I KAGDL ALL++L+  DVLFIDEIHRL+  VEE+LY AME
Sbjct: 85  AFVIANELGVHLKSTSGPAIEKAGDLVALLSDLDPGDVLFIDEIHRLAKPVEEVLYSAME 144

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           D+ +D+++GEG +  +V + L  FTLI ATT  G L+ PL+DRFGI   + +Y +++L+ 
Sbjct: 145 DYYIDIVIGEGQTTHAVHVPLPPFTLIGATTLAGQLSAPLRDRFGIVEHMQYYTVDELEK 204

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           IVQR + +   ++  EAA E+A RSRGTPR+A RLL+RVRDFAEV   KTI+      AL
Sbjct: 205 IVQRSSDVFHTSIAPEAAHELARRSRGTPRVANRLLKRVRDFAEVKGEKTISLATTSDAL 264

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
            +L +D  G DQ D + L  +   + GGPVGI T++A + E  + IE L EPY++Q GFI
Sbjct: 265 KQLQVDSEGLDQTDRKLLRTMIEGYNGGPVGIRTLAANIGEDMETIESLYEPYLLQNGFI 324

Query: 311 QRTPRGRLLMPIAWQHLGIDIPH 333
             TPRGR++   A+  LG+ IP+
Sbjct: 325 LLTPRGRMVTDKAYLQLGLPIPN 347


>gi|182412102|ref|YP_001817168.1| Holliday junction DNA helicase RuvB [Opitutus terrae PB90-1]
 gi|177839316|gb|ACB73568.1| Holliday junction DNA helicase RuvB [Opitutus terrae PB90-1]
          Length = 345

 Score =  331 bits (849), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 167/312 (53%), Positives = 221/312 (70%), Gaps = 1/312 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP T  +FTGQ +    L+V + AAK R EAL+H+L  GPPGLGKTTLA ++  ELG N
Sbjct: 27  LRPLTFADFTGQPKTVERLQVMVGAAKQRGEALNHILLSGPPGLGKTTLAFILGHELGKN 86

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGPV+ KAGDLA LLTNLE+ D+LFIDEIHR+   VEE LY AMEDF+LD+M+ +G
Sbjct: 87  VRVTSGPVVEKAGDLAGLLTNLEEGDILFIDEIHRIPKTVEEYLYSAMEDFRLDIMIDQG 146

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARSV+++L RFTL+ ATTR GLLT PL+ RF +  RL++Y+   L++IV+R   L  +
Sbjct: 147 PNARSVRLSLPRFTLVGATTRAGLLTAPLRSRFTLQTRLDYYDHATLESIVRRSCGLLKV 206

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            V    A EIA RSRGTPR+A  L+  VRDFA+      IT+ +A AAL  L ID  G D
Sbjct: 207 PVDQGGAHEIATRSRGTPRVANNLINFVRDFAQQRANGKITQPVAAAALELLEIDAAGLD 266

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           ++D R L ++A N+GG PVGI TI+  + E  + +E++ EP++IQ+G+IQRT  GR+L P
Sbjct: 267 EMDKRMLRVMAENYGGRPVGISTIAVAVGEESETLEEVHEPFLIQEGYIQRTREGRMLTP 326

Query: 322 IAWQHLGIDIPH 333
             +Q +G+  PH
Sbjct: 327 KGYQAVGLK-PH 337


>gi|300811582|ref|ZP_07092066.1| Holliday junction DNA helicase RuvB [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
 gi|300497442|gb|EFK32480.1| Holliday junction DNA helicase RuvB [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
          Length = 336

 Score =  331 bits (849), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 163/311 (52%), Positives = 222/311 (71%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L ++ GQ     +++V+I+AA+ R EALDHVL  GPPGLGKTTLA V+A E GV+
Sbjct: 22  LRPQLLSQYIGQGHVKKDMEVYIQAARQRDEALDHVLLYGPPGLGKTTLAFVIANESGVS 81

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            +STSGP I +AGDL ALLT+LE  DVLFIDEIHRL+  VEE+LY AMEDF +D++VGEG
Sbjct: 82  LKSTSGPAIERAGDLVALLTDLEPGDVLFIDEIHRLAKPVEEVLYSAMEDFYIDIVVGEG 141

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            +  ++ + L  FTLI ATT  G L+ PL+DRFGI   + +Y++EDL+ I+ R +++   
Sbjct: 142 QTTHAIHLPLPPFTLIGATTLAGQLSAPLRDRFGIVEHMQYYQVEDLEKIILRSSEVFHT 201

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            ++ +AA E+A RSRGTPR+A RLL+RVRDFAEV   K I+ E    AL +L +D  G D
Sbjct: 202 KISPQAAHELARRSRGTPRVANRLLKRVRDFAEVKGEKEISLETTAMALKQLQVDSAGLD 261

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           Q D + L  +  ++GGGPVGI T+++ + E R+ IE L EPY++Q GFI  TPRGR++  
Sbjct: 262 QTDRKLLRTMILSYGGGPVGIRTLASNIGEDRETIESLYEPYLLQNGFIVMTPRGRVVTQ 321

Query: 322 IAWQHLGIDIP 332
            A+Q L + +P
Sbjct: 322 KAYQQLNLPLP 332


>gi|256844551|ref|ZP_05550037.1| Holliday junction DNA helicase RuvB [Lactobacillus crispatus
           125-2-CHN]
 gi|256613629|gb|EEU18832.1| Holliday junction DNA helicase RuvB [Lactobacillus crispatus
           125-2-CHN]
          Length = 339

 Score =  331 bits (849), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 167/322 (51%), Positives = 226/322 (70%), Gaps = 1/322 (0%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           N  ++  ++SL RP+TL+++ GQ      + ++I+AA+ R EALDHVL  GPPGLGKTTL
Sbjct: 16  NPEEQQMELSL-RPQTLDQYLGQKRVKKEMSIYIKAARQRDEALDHVLLYGPPGLGKTTL 74

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           A V+A ELGV+ +STSGP I KAGDL ALL++L+  DVLFIDEIHRL+  VEE+LY AME
Sbjct: 75  AFVIANELGVHLKSTSGPAIEKAGDLVALLSDLDPGDVLFIDEIHRLAKPVEEVLYSAME 134

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           D+ +D+++GEG +  +V + L  FTLI ATT  G L+ PL+DRFGI   + +Y I++L+ 
Sbjct: 135 DYYIDIVIGEGQTTHAVHVPLPPFTLIGATTLAGELSAPLRDRFGIVEHMQYYTIDELEQ 194

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           IV R + +   ++  EAA E+A RSRGTPR+A RLL+RVRDFAEV   KTI+ E  + AL
Sbjct: 195 IVLRSSDVFHTSIAPEAAHELARRSRGTPRVANRLLKRVRDFAEVKGEKTISLETTEGAL 254

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
            +L +D  G DQ D R L  +   + GGPVGI T++A + E  + IE L EPY++Q GFI
Sbjct: 255 KQLQVDDEGLDQTDRRLLRTMIEGYNGGPVGIRTLAANVGEDMETIESLYEPYLLQHGFI 314

Query: 311 QRTPRGRLLMPIAWQHLGIDIP 332
             TPRGR++   A+  LG+ IP
Sbjct: 315 LLTPRGRMVTDKAYLQLGLPIP 336


>gi|297170678|gb|ADI21702.1| holliday junction resolvasome, helicase subunit [uncultured
           Verrucomicrobiales bacterium HF0130_14P10]
          Length = 347

 Score =  331 bits (849), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 168/323 (52%), Positives = 223/323 (69%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
            LS ++ ++D   + LRP T E+FTGQ +    LKV + AA  R + L HVL  GPPGLG
Sbjct: 11  FLSESLERKDDADAALRPPTFEDFTGQAKTIERLKVIVGAASDREDPLKHVLLCGPPGLG 70

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTTLA ++A+EL    R TSGPVI K GDLA LLTNL++ DVLFIDEIHRL   VEE LY
Sbjct: 71  KTTLAYIIAKELNREIRITSGPVIDKPGDLAGLLTNLQEGDVLFIDEIHRLPKTVEEYLY 130

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            AMEDF++D+M+ +GP+ARSV++ + RFTLI ATTRVGLLT P++ RF +  RL++Y  +
Sbjct: 131 SAMEDFRIDIMIDQGPNARSVRLEIPRFTLIGATTRVGLLTAPMRSRFTLQTRLDYYGRD 190

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           DL TIV+R  KL      ++ A EIA R+RGTPRIA  L+   RDFAE      IT E+A
Sbjct: 191 DLATIVKRSCKLLETPFDEDGAKEIAGRARGTPRIANNLIHFARDFAEQRSEGKITSEVA 250

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
             AL  L ID  G D++D R L ++A N+ GGPVG+ T++  ++E    +E++ EP++IQ
Sbjct: 251 AQALELLEIDNNGLDEMDKRILRLMADNYRGGPVGLGTVAVAVNEEEHTLEEVHEPFLIQ 310

Query: 307 QGFIQRTPRGRLLMPIAWQHLGI 329
           +G+IQRTP+GR L    WQ +G+
Sbjct: 311 EGYIQRTPQGRALTAKGWQVIGL 333


>gi|309803616|ref|ZP_07697708.1| Holliday junction DNA helicase RuvB [Lactobacillus iners LactinV
           11V1-d]
 gi|315653061|ref|ZP_07905989.1| crossover junction ATP-dependent DNA helicase RuvB [Lactobacillus
           iners ATCC 55195]
 gi|308164364|gb|EFO66619.1| Holliday junction DNA helicase RuvB [Lactobacillus iners LactinV
           11V1-d]
 gi|315489596|gb|EFU79230.1| crossover junction ATP-dependent DNA helicase RuvB [Lactobacillus
           iners ATCC 55195]
          Length = 334

 Score =  331 bits (849), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 168/334 (50%), Positives = 229/334 (68%), Gaps = 1/334 (0%)

Query: 2   MDREGLLS-RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M ++ L S  +   E A    LRP  L ++ GQ +  S + ++I+AAK R E+LDHVL  
Sbjct: 1   MTKDNLFSGESTPMEQATELSLRPSNLSQYIGQEKVKSEMAIYIKAAKQRDESLDHVLLY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTT+A V+A ELGV  +STSGP I KAGDL ALL+ L+  DVLFIDEIHRL+  
Sbjct: 61  GPPGLGKTTMAFVIANELGVTLKSTSGPAIDKAGDLVALLSELKPGDVLFIDEIHRLAKT 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILY AMEDF +D+MVGEG +A +V + LS FTLI ATTR G L+ PL+DRFGI   +
Sbjct: 121 VEEILYSAMEDFYVDIMVGEGSAAHAVHVPLSPFTLIGATTRAGQLSAPLRDRFGIVEHM 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y  ++L+ I++R +++    +  EAA E+A RSRGTPR+A RLL+R+RDFAEV    +
Sbjct: 181 QYYSEDELQQIIERSSRVLETGINIEAAHELARRSRGTPRVANRLLKRIRDFAEVNGETS 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I+      AL +L +D  G DQ+D + L ++   + GGPVGI+T++A + E  + I ++ 
Sbjct: 241 ISLLTTKHALAKLEVDDEGLDQIDRKILKIMINCYHGGPVGIKTLAANIGEDVETISEVY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           EPY++Q+GFI RTPRGR+    A+  LGI +  R
Sbjct: 301 EPYLLQKGFISRTPRGRVANAKAYVQLGISLDTR 334


>gi|309807402|ref|ZP_07701365.1| Holliday junction DNA helicase RuvB [Lactobacillus iners LactinV
           01V1-a]
 gi|325913779|ref|ZP_08176140.1| Holliday junction DNA helicase RuvB [Lactobacillus iners UPII 60-B]
 gi|308169324|gb|EFO71379.1| Holliday junction DNA helicase RuvB [Lactobacillus iners LactinV
           01V1-a]
 gi|325476979|gb|EGC80130.1| Holliday junction DNA helicase RuvB [Lactobacillus iners UPII 60-B]
          Length = 334

 Score =  331 bits (849), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 168/334 (50%), Positives = 229/334 (68%), Gaps = 1/334 (0%)

Query: 2   MDREGLLS-RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M ++ L S  +   E A    LRP  L ++ GQ +  S + ++I+AAK R E+LDHVL  
Sbjct: 1   MTKDNLFSSESTPMEQATELSLRPSNLSQYIGQEKVKSEMAIYIKAAKQRDESLDHVLLY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTT+A V+A ELGV  +STSGP I KAGDL ALL+ L+  DVLFIDEIHRL+  
Sbjct: 61  GPPGLGKTTMAFVIANELGVTLKSTSGPAIDKAGDLVALLSELKPGDVLFIDEIHRLAKT 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILY AMEDF +D+MVGEG +A +V + LS FTLI ATTR G L+ PL+DRFGI   +
Sbjct: 121 VEEILYSAMEDFYVDIMVGEGSAAHAVHVPLSPFTLIGATTRAGQLSAPLRDRFGIIEHM 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y  ++L+ I++R +++    +  EAA E+A RSRGTPR+A RLL+R+RDFAEV    +
Sbjct: 181 QYYSEDELQQIIERSSRVLETGINIEAAHELARRSRGTPRVANRLLKRIRDFAEVNGETS 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I+      AL +L +D  G DQ+D + L ++   + GGPVGI+T++A + E  + I ++ 
Sbjct: 241 ISLLTTKHALAKLEVDDEGLDQIDRKILKIMINCYHGGPVGIKTLAANIGEDVETISEVY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           EPY++Q+GFI RTPRGR+    A+  LGI +  R
Sbjct: 301 EPYLLQKGFISRTPRGRVANAKAYVQLGISLDTR 334


>gi|242310432|ref|ZP_04809587.1| holliday junction DNA helicase B [Helicobacter pullorum MIT
           98-5489]
 gi|239522830|gb|EEQ62696.1| holliday junction DNA helicase B [Helicobacter pullorum MIT
           98-5489]
          Length = 333

 Score =  331 bits (849), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 163/297 (54%), Positives = 218/297 (73%), Gaps = 1/297 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP    ++ GQ +   NL+VFI AAK R + LDH+L  GPPGLGKTTLA +++ E+   
Sbjct: 20  LRPNNWSDYIGQEKLKKNLQVFINAAKKRNDTLDHILLFGPPGLGKTTLAHIISGEMNAP 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + T+ P+I KAGDLAA+LTNL + ++LFIDEIHRLS  +EEILYPAMEDF+LD+++G G
Sbjct: 80  IKVTAAPMIEKAGDLAAILTNLSEGEILFIDEIHRLSPAIEEILYPAMEDFRLDIIIGSG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+A++VKI+L RFTLI ATTR G+++NPL+DRFG+  R+ FYE E+L  IVQ  A     
Sbjct: 140 PAAQTVKIDLPRFTLIGATTRAGMISNPLRDRFGMQFRMQFYEKEELARIVQIAAIKLQK 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
             + + A EIA RSRGTPRIA RLL+RVRDFAEVA    IT+E    AL  L +++ GFD
Sbjct: 200 ECSSDGALEIAKRSRGTPRIALRLLKRVRDFAEVAEEGIITKERTQYALNELGVNEYGFD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRL 318
           +LDLR+L +I  +  G P+G+ T++A +SE    IED+IEPY++  GF++RT RGR+
Sbjct: 260 ELDLRFLKIICES-RGRPIGLSTLAAAMSEDEGTIEDVIEPYLLINGFLERTARGRI 315


>gi|119356405|ref|YP_911049.1| Holliday junction DNA helicase RuvB [Chlorobium phaeobacteroides
           DSM 266]
 gi|166231481|sp|A1BDZ8|RUVB_CHLPD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|119353754|gb|ABL64625.1| Holliday junction DNA helicase RuvB [Chlorobium phaeobacteroides
           DSM 266]
          Length = 346

 Score =  331 bits (849), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 164/306 (53%), Positives = 217/306 (70%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  +++FTGQ     NL+VFI AAK R +ALDHVL  GPPGLGKTTLA ++A E+G N
Sbjct: 21  IRPLKMDDFTGQQRLTDNLRVFISAAKIRGDALDHVLLSGPPGLGKTTLANIIASEMGGN 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGP++ KAG+LA LLT+L   DVLFIDEIHRL   VEE LY AMEDF++D+M+  G
Sbjct: 81  IKVTSGPMLDKAGNLAGLLTSLRKGDVLFIDEIHRLPAAVEEYLYSAMEDFRIDIMLDSG 140

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSAR+V++ +  FTL+ ATTR GLLT+PL+ RFGI  R ++Y  E L+ I+ R + + G+
Sbjct: 141 PSARAVQLRIEPFTLVGATTRSGLLTSPLRARFGISSRFDYYPPELLERIILRASGILGI 200

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            VT EAA EIA RSRGTPRIA RLLRR RDFA+VA +  I  +IA   L  L ID+ G D
Sbjct: 201 GVTTEAAGEIAGRSRGTPRIANRLLRRARDFAQVADSFVINHDIAMTTLASLEIDEEGLD 260

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + +  I   F GGPVG+ +++  + E +D IE++ EPY+IQ G++ RTPRGR+   
Sbjct: 261 DMDKKIMDTIVNKFNGGPVGVASLAVSVGEEQDTIEEVYEPYLIQAGYLARTPRGRVATR 320

Query: 322 IAWQHL 327
           +A +  
Sbjct: 321 LALKRF 326


>gi|312880161|ref|ZP_07739961.1| Holliday junction DNA helicase subunit RuvB [Aminomonas paucivorans
           DSM 12260]
 gi|310783452|gb|EFQ23850.1| Holliday junction DNA helicase subunit RuvB [Aminomonas paucivorans
           DSM 12260]
          Length = 353

 Score =  331 bits (849), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 166/321 (51%), Positives = 226/321 (70%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           +++ D   LRP TL+ F GQ      L++F+ A++ R E LDH LF GPPGLGKTTLA +
Sbjct: 21  KDEEDHLSLRPETLDSFIGQDSLKEKLRIFVAASRQRGEPLDHTLFYGPPGLGKTTLASI 80

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +ARE+G   R T+GP + +AGDLAA+L+NL+  DVLFIDEIHRL + VEEILYPAMED+ 
Sbjct: 81  IAREMGGQLRITTGPALERAGDLAAILSNLQPHDVLFIDEIHRLPVTVEEILYPAMEDYN 140

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           L ++VG+GP ARSV++ L RFTL+ ATTR+GL+T+PL+ RFGI  +L+ Y+  DL  IV 
Sbjct: 141 LCIVVGKGPLARSVRLQLPRFTLVGATTRLGLMTSPLRARFGIVEQLDLYDPRDLTKIVT 200

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           RGA++ G+ + ++A+ EI  RSRGTPR+A RLLRRVRD A V+    I R +A +AL  L
Sbjct: 201 RGAEVLGVQIEEDASLEIGRRSRGTPRVALRLLRRVRDVAAVSGEAGIRRTVACSALDML 260

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D  G D  D + L  +   F GGPVG+ T++A L+E    IED+ EP++IQ+GF++RT
Sbjct: 261 GVDPEGLDDGDRKLLRAVVELFDGGPVGLSTLAAALNEDAQTIEDIYEPFLIQKGFLERT 320

Query: 314 PRGRLLMPIAWQHLGIDIPHR 334
           PRGR      + +LG +   R
Sbjct: 321 PRGRKATRGTFAYLGFEPSSR 341


>gi|217077920|ref|YP_002335638.1| Holliday junction DNA helicase RuvB [Thermosipho africanus TCF52B]
 gi|217037775|gb|ACJ76297.1| holliday junction DNA helicase RuvB [Thermosipho africanus TCF52B]
          Length = 336

 Score =  331 bits (848), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 157/311 (50%), Positives = 226/311 (72%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           D+  +RP+ LEE+ GQ      LK+ I A+K R EALDHVL VGPPGLGKTTLA +++ E
Sbjct: 16  DVLTIRPQKLEEYIGQENIKKRLKLAINASKIRKEALDHVLLVGPPGLGKTTLAHIISNE 75

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           +G N   TSGP++ K GD+AA+L+NLE  D+LFIDEIHR++  VEEILY AMEDFQ+D++
Sbjct: 76  MGTNIHITSGPILEKQGDVAAILSNLEYGDILFIDEIHRMNKSVEEILYTAMEDFQIDIL 135

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
           +G+GPSARS++I+L  FTL+ ATTR GLL++PL++RFG+ + L+FY +E+L  I++R + 
Sbjct: 136 IGKGPSARSIRIDLQPFTLVGATTRSGLLSSPLRNRFGLIMELDFYTVEELSLIIKRAST 195

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257
           +  + + ++AA  +A RSRGTPRIA RLLRRVRD + V   K I   + +  +  L ID 
Sbjct: 196 VLNVEIDEDAAQLLAKRSRGTPRIALRLLRRVRDMSTVTEKKKIDVMMVEEIMELLGIDN 255

Query: 258 MGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317
            G D++D + LT I   + GGPVG+++++A +    D+I ++ EPY++Q GF+ RT RGR
Sbjct: 256 EGLDEVDRKILTTIIEVYQGGPVGLKSLAASVGLSEDSISEVYEPYLLQSGFLARTHRGR 315

Query: 318 LLMPIAWQHLG 328
           ++   A++HLG
Sbjct: 316 VVTSKAYKHLG 326


>gi|323465933|gb|ADX69620.1| Holliday junction ATP-dependent DNA helicase ruvB [Lactobacillus
           helveticus H10]
          Length = 341

 Score =  331 bits (848), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 166/320 (51%), Positives = 223/320 (69%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           S+E+A    LRP+TL+++ GQ      + ++I+AAK R EALDHVL  GPPGLGKTTLA 
Sbjct: 19  SEEEAMELSLRPQTLDQYLGQKRVKKEMSIYIKAAKQRDEALDHVLLYGPPGLGKTTLAF 78

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           V+A ELGV+ +STSGP I KAGDL ALL++L+  DVLFIDEIHRL+  VEE+LY AMED+
Sbjct: 79  VIANELGVHLKSTSGPAIEKAGDLVALLSDLDPGDVLFIDEIHRLAKPVEEVLYSAMEDY 138

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            +D+++GEG +  +V + L  FTLI ATT    L+ PL+DRFGI   + +Y I++L+ IV
Sbjct: 139 YIDIVIGEGQTTHAVHVPLPPFTLIGATTLAAQLSAPLRDRFGIVEHMQYYTIDELEKIV 198

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           QR + +   ++  EAA E+A RSRGTPR+A R L+RVRDFAEV   KTI+    + AL +
Sbjct: 199 QRSSDVFHTSIAPEAAHELARRSRGTPRVANRFLKRVRDFAEVKGEKTISLATTEGALKQ 258

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D  G DQ D R L  +   + GGPVGI T++A + E  + IE L EPY++Q GFI  
Sbjct: 259 LQVDDEGLDQTDRRLLRTMIEGYNGGPVGIRTLAANVGEDMETIESLYEPYLLQHGFILL 318

Query: 313 TPRGRLLMPIAWQHLGIDIP 332
           TPRGR++   A+  LG+ +P
Sbjct: 319 TPRGRMVTDKAYLQLGLPVP 338


>gi|161506975|ref|YP_001576929.1| Holliday junction DNA helicase RuvB [Lactobacillus helveticus DPC
           4571]
 gi|172048185|sp|A8YTI2|RUVB_LACH4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|160347964|gb|ABX26638.1| Holliday junction DNA helicase [Lactobacillus helveticus DPC 4571]
          Length = 347

 Score =  331 bits (848), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 166/320 (51%), Positives = 223/320 (69%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           S+E+A    LRP+TL+++ GQ      + ++I+AAK R EALDHVL  GPPGLGKTTLA 
Sbjct: 25  SEEEAMELSLRPQTLDQYLGQKRVKKEMSIYIKAAKQRDEALDHVLLYGPPGLGKTTLAF 84

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           V+A ELGV+ +STSGP I KAGDL ALL++L+  DVLFIDEIHRL+  VEE+LY AMED+
Sbjct: 85  VIANELGVHLKSTSGPAIEKAGDLVALLSDLDPGDVLFIDEIHRLAKPVEEVLYSAMEDY 144

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            +D+++GEG +  +V + L  FTLI ATT  G L+ PL+DRFGI   + +Y I++L+ IV
Sbjct: 145 YIDIVIGEGQTTHAVHVPLPPFTLIGATTLAGQLSAPLRDRFGIVEHMQYYTIDELEKIV 204

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           QR + +   ++  EAA E+A RSRGTPR+A R L+RVRDFAEV   KTI+    + AL +
Sbjct: 205 QRSSDVFHTSIAPEAAHELARRSRGTPRVANRFLKRVRDFAEVKGEKTISLATTEGALKQ 264

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D  G DQ D R L  +   + GGPVGI T++A + E  + IE L EPY++Q GFI  
Sbjct: 265 LQVDDEGLDQTDRRLLRTMIEGYNGGPVGIRTLAANVGEDMETIESLYEPYLLQHGFILL 324

Query: 313 TPRGRLLMPIAWQHLGIDIP 332
            PRGR++   A+  LG+ +P
Sbjct: 325 GPRGRMVTDKAYLQLGLPVP 344


>gi|75907231|ref|YP_321527.1| Holliday junction DNA helicase RuvB [Anabaena variabilis ATCC
           29413]
 gi|97189907|sp|Q3MEF4|RUVB_ANAVT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|75700956|gb|ABA20632.1| Holliday junction DNA helicase subunit RuvB [Anabaena variabilis
           ATCC 29413]
          Length = 366

 Score =  331 bits (848), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 161/312 (51%), Positives = 218/312 (69%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+   ++ GQ +    L + I+AAK+R E LDH+L  GPPGLGKTT+A ++A E+GVN
Sbjct: 49  IRPQKFADYIGQKDLKDVLDIAIKAAKSRGEVLDHLLLYGPPGLGKTTMAMILASEMGVN 108

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           ++ TS P + +  D+  LL NL+  D+LFIDEIHRLS + EEILYPAMED++LD+ VG+G
Sbjct: 109 YKITSAPALERPRDIVGLLVNLKPGDILFIDEIHRLSRMTEEILYPAMEDYRLDITVGKG 168

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            SAR   I LS+FTL+ ATTRVG LT+PL+DRFG+  +L FYE+++L  IV R A+L   
Sbjct: 169 SSARIRSIPLSKFTLVGATTRVGALTSPLRDRFGLIQKLRFYEVDELSQIVLRSAQLLQT 228

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            VTD+ A EIA RSRGTPRIA RLL+RVRD+A+V     +++ IA  AL    +D  G D
Sbjct: 229 QVTDDGATEIARRSRGTPRIANRLLKRVRDYAQVKSCTEVSQNIAAEALQLFQVDPCGLD 288

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             D R L++I   F GGPVG+ETI+A   E    IE++ EPY++Q G++ RTPRGR    
Sbjct: 289 WTDRRMLSVIIEQFNGGPVGLETIAAATGEDTQTIEEVYEPYLMQIGYLSRTPRGRTATK 348

Query: 322 IAWQHLGIDIPH 333
            A++H+G   P+
Sbjct: 349 AAYKHMGFTPPN 360


>gi|325911944|ref|ZP_08174347.1| Holliday junction DNA helicase RuvB [Lactobacillus iners UPII
           143-D]
 gi|325476246|gb|EGC79409.1| Holliday junction DNA helicase RuvB [Lactobacillus iners UPII
           143-D]
          Length = 334

 Score =  331 bits (848), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 168/334 (50%), Positives = 229/334 (68%), Gaps = 1/334 (0%)

Query: 2   MDREGLLS-RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M ++ L S  +   E A    LRP  L ++ GQ +  S + ++I+AAK R E+LDHVL  
Sbjct: 1   MTKDNLFSGESTPMEQATELSLRPSNLSQYIGQEKVKSEMAIYIKAAKQRDESLDHVLLY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTT+A V+A ELGV  +STSGP I KAGDL ALL+ L+  DVLFIDEIHRL+  
Sbjct: 61  GPPGLGKTTMAFVIANELGVTVKSTSGPAIDKAGDLVALLSELKPGDVLFIDEIHRLAKT 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILY AMEDF +D+MVGEG +A +V + LS FTLI ATTR G L+ PL+DRFGI   +
Sbjct: 121 VEEILYSAMEDFYVDIMVGEGSAAHAVHVPLSPFTLIGATTRAGQLSAPLRDRFGIVEHM 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y  ++L+ I++R +++    +  EAA E+A RSRGTPR+A RLL+R+RDFAEV    +
Sbjct: 181 QYYSEDELQQIIERSSRVLETGINIEAAHELARRSRGTPRVANRLLKRIRDFAEVNGETS 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I+      AL +L +D  G DQ+D + L ++   + GGPVGI+T++A + E  + I ++ 
Sbjct: 241 ISLLTTKHALAKLEVDDEGLDQIDRKILKIMINCYHGGPVGIKTLAANIGEDVETISEVY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           EPY++Q+GFI RTPRGR+    A+  LGI +  R
Sbjct: 301 EPYLLQKGFISRTPRGRVANAKAYVQLGISLDTR 334


>gi|259046889|ref|ZP_05737290.1| Holliday junction DNA helicase RuvB [Granulicatella adiacens ATCC
           49175]
 gi|259036512|gb|EEW37767.1| Holliday junction DNA helicase RuvB [Granulicatella adiacens ATCC
           49175]
          Length = 335

 Score =  331 bits (848), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 164/307 (53%), Positives = 218/307 (71%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+TL+++ GQ +    L ++I+AA++R+EALDHVL  GPPGLGKTTLA V+A EL V 
Sbjct: 23  LRPQTLQQYIGQQKVKEELAIYIQAARSRSEALDHVLLYGPPGLGKTTLAMVIANELEVG 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            ++TSGP I + GDL ALL +LE  DVLFIDEIHRL  +VEE+LY AMEDF +D++VG+G
Sbjct: 83  IKTTSGPAIERPGDLVALLNDLEAGDVLFIDEIHRLPRVVEEMLYSAMEDFFVDIVVGQG 142

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+A  V   L  FTLI ATTR G L+ PL+DRFGI   + +Y+   L  IV+R A +   
Sbjct: 143 PTAHPVHFPLPPFTLIGATTRAGALSAPLRDRFGIVEHMEYYDEASLSEIVKRSANVFDS 202

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + DEAA EIA+RSRGTPRIA RLL+RVRDF++V     I++EI   AL  L +D  G D
Sbjct: 203 EIKDEAALEIALRSRGTPRIANRLLKRVRDFSQVYEEGMISKEITQQALKVLRVDAKGLD 262

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + LT +   + GGPVG+  I+A +SE  + IED+ EPY++Q GF++RT RGR++ P
Sbjct: 263 HIDRKLLTAMIDLYDGGPVGLGAIAANISEDAETIEDMYEPYLLQIGFLKRTSRGRVVTP 322

Query: 322 IAWQHLG 328
             + HLG
Sbjct: 323 EGYAHLG 329


>gi|119716614|ref|YP_923579.1| Holliday junction DNA helicase RuvB [Nocardioides sp. JS614]
 gi|171704606|sp|A1SJA7|RUVB_NOCSJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|119537275|gb|ABL81892.1| Holliday junction DNA helicase subunit RuvB [Nocardioides sp.
           JS614]
          Length = 360

 Score =  331 bits (848), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 162/311 (52%), Positives = 217/311 (69%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPRTL+E  GQV     L + +EAA+ R  A DHVL  GPPGLGKTTLA ++A E+G  
Sbjct: 35  LRPRTLDEVVGQVRVRDQLGLVLEAARRRGRAPDHVLLSGPPGLGKTTLAMIIASEMGAP 94

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGP I  AGDLAA+L+ + + DVLF+DEIHR+S   EE+LY AMEDF++D+++G+G
Sbjct: 95  LRLTSGPAITHAGDLAAILSGMNEGDVLFVDEIHRMSRPAEEMLYMAMEDFRVDVVIGKG 154

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P A ++ + +  FTL+ ATTR GLL  PL+DRFG    L FYE ++L  IVQR A+L  +
Sbjct: 155 PGATAIPLEIPPFTLVGATTRAGLLPGPLRDRFGFTAHLEFYEPDELDLIVQRSARLLDV 214

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            V  +   EIA RSRGTPRIA RLLRRVRDFA+V     +T  +A  AL    +D++G D
Sbjct: 215 HVLPDGTAEIASRSRGTPRIANRLLRRVRDFAQVRADGVVTLPVAQDALDLYEVDQLGLD 274

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           +LD   L ++ R FGGGPVGI T++  + E R+ +E++ EP++++ GF+ RTPRGR+  P
Sbjct: 275 RLDRGVLDVLCRRFGGGPVGISTLAVAVGEERETVEEVAEPFLVRNGFLARTPRGRVATP 334

Query: 322 IAWQHLGIDIP 332
            AW+HLG+  P
Sbjct: 335 AAWEHLGLTAP 345


>gi|34558125|ref|NP_907940.1| Holliday junction DNA helicase RuvB [Wolinella succinogenes DSM
           1740]
 gi|44888364|sp|Q7M879|RUVB_WOLSU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|34483843|emb|CAE10840.1| HOLLIDAY JUNCTION DNA HELICASE [Wolinella succinogenes]
          Length = 335

 Score =  331 bits (848), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 164/297 (55%), Positives = 219/297 (73%), Gaps = 1/297 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP   +++ GQ +   NL VFIEAAK R E LDH+LF GPPGLGKTTLA +++ E+G N
Sbjct: 20  LRPSGWDDYIGQEKIKRNLGVFIEAAKRRGEGLDHILFFGPPGLGKTTLAHIISHEMGAN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + T+ P+I KAGDLAA+LTNL + D+LFIDEIHRLS  +EEILYPAMEDF+LD+++G G
Sbjct: 80  IKVTTAPMIEKAGDLAAILTNLSEGDILFIDEIHRLSASIEEILYPAMEDFRLDIIIGSG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+A++VKI+L RFTLI ATTR G+++ PL++RFG+   + FY IE+L  I+   +     
Sbjct: 140 PAAQTVKIDLPRFTLIGATTRAGMISKPLRERFGMNFWMQFYNIEELSQIITLASIKLKK 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
               E+A EIA RSRGTPR+A RLLRRVRDFAEVA+ + I  E A  AL  L ++  GFD
Sbjct: 200 RCLLESAKEIARRSRGTPRVALRLLRRVRDFAEVANEEEIKIEQARYALHELGVNDHGFD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRL 318
            LDLRYL ++ ++  G PVG+ TI+A +SE    IED++EPY++  G+++RT RGR+
Sbjct: 260 DLDLRYLRILVQS-KGRPVGLGTIAAAMSEDEGTIEDVVEPYLLAHGYLERTARGRV 315


>gi|295692270|ref|YP_003600880.1| holliday junction ATP-dependent DNA helicase ruvb [Lactobacillus
           crispatus ST1]
 gi|295030376|emb|CBL49855.1| Holliday junction ATP-dependent DNA helicase ruvB [Lactobacillus
           crispatus ST1]
          Length = 339

 Score =  331 bits (848), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 166/322 (51%), Positives = 226/322 (70%), Gaps = 1/322 (0%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           N  ++  ++SL RP+TL+++ GQ      + ++I+AA+ R EALDHVL  GPPGLGKTTL
Sbjct: 16  NPEEQQMELSL-RPQTLDQYLGQKRVKKEMSIYIKAARQRDEALDHVLLYGPPGLGKTTL 74

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           A V+A ELGV+ +STSGP I K+GDL ALL++L+  DVLFIDEIHRL+  VEE+LY AME
Sbjct: 75  AFVIANELGVHLKSTSGPAIEKSGDLVALLSDLDPGDVLFIDEIHRLAKPVEEVLYSAME 134

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           D+ +D+++GEG +  +V + L  FTLI ATT  G L+ PL+DRFGI   + +Y I++L+ 
Sbjct: 135 DYYIDIVIGEGQTTHAVHVPLPPFTLIGATTLAGQLSAPLRDRFGIVEHMQYYTIDELEQ 194

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           IV R + +   ++  EAA E+A RSRGTPR+A RLL+RVRDFAEV   KTI+ E  + AL
Sbjct: 195 IVLRSSDVFHTSIAPEAAHELARRSRGTPRVANRLLKRVRDFAEVKGEKTISLETTEGAL 254

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
            +L +D  G DQ D R L  +   + GGPVGI T++A + E  + IE L EPY++Q GFI
Sbjct: 255 KQLQVDDEGLDQTDRRLLRTMIEGYNGGPVGIRTLAANVGEDMETIESLYEPYLLQHGFI 314

Query: 311 QRTPRGRLLMPIAWQHLGIDIP 332
             TPRGR++   A+  LG+ IP
Sbjct: 315 LLTPRGRMVTDKAYLQLGLPIP 336


>gi|227510190|ref|ZP_03940239.1| Holliday junction DNA helicase B [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227190395|gb|EEI70462.1| Holliday junction DNA helicase B [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 339

 Score =  331 bits (848), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 164/318 (51%), Positives = 223/318 (70%), Gaps = 1/318 (0%)

Query: 11  NVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           NV+ ++ +I   LRP+TL ++ GQ +  + LKV+I+AAK R E+LDHVL  GPPGLGKTT
Sbjct: 12  NVNGDENNIEKTLRPQTLGDYIGQTDVKNELKVYIKAAKQREESLDHVLLYGPPGLGKTT 71

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           LA V+A E+GVN R+T+GP I K GDL +LL  L   DVLFIDEIHRL  +VEE+LY AM
Sbjct: 72  LAMVIANEMGVNIRTTTGPAIDKPGDLLSLLNELNPGDVLFIDEIHRLPKVVEEMLYSAM 131

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           EDF +D++VG+G  A  V   L  FTLI ATTR G+L+ PL+DRFGI   +N+YE+ DL+
Sbjct: 132 EDFFVDIIVGQGSGAHPVHFPLPPFTLIGATTRAGMLSAPLRDRFGIVEHMNYYEVSDLE 191

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            IVQR A +  + +    A EIA+RSRGTPR+A RLL+R+RDFA+V    +I  EI   A
Sbjct: 192 EIVQRTAGIFQIPILKSGAHEIALRSRGTPRVANRLLKRIRDFAQVFDKDSIDLEIVRYA 251

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           L +L +D +G D  D++ L  +   + GGPVG++T++A + E  D I ++ EPY++Q G 
Sbjct: 252 LEKLKVDDLGLDATDIKLLRTMIDYYDGGPVGLKTLAANIGEETDTIAEMYEPYLLQIGL 311

Query: 310 IQRTPRGRLLMPIAWQHL 327
           I+RT RGR + P  ++HL
Sbjct: 312 IKRTARGRRVTPKGYEHL 329


>gi|237785620|ref|YP_002906325.1| Holliday junction DNA helicase RuvB [Corynebacterium kroppenstedtii
           DSM 44385]
 gi|237758532|gb|ACR17782.1| holliday junction DNA helicase [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 374

 Score =  331 bits (848), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 164/324 (50%), Positives = 222/324 (68%), Gaps = 1/324 (0%)

Query: 11  NVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
               +DAD  L LRPR+L+EF GQ +    L++ +  AKAR    DH+L  GPPGLGKTT
Sbjct: 44  TAQSDDADAELSLRPRSLDEFIGQSKVREQLELVLSGAKARRVVPDHILLAGPPGLGKTT 103

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           +A ++A+E+G + R TSGP + K GDLAA+L+NL + DVLFIDEIHR++   EE+LY AM
Sbjct: 104 MAMIIAQEMGTSLRMTSGPALEKTGDLAAMLSNLMEGDVLFIDEIHRMARPAEEMLYMAM 163

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           EDF++D++VG+GP A S+ ++L  FTL+ ATTR G+LT PL+DRFG   ++ FY   DL 
Sbjct: 164 EDFRIDVIVGKGPGATSIPLDLPPFTLVGATTRAGMLTGPLRDRFGFTAQMEFYSAADLT 223

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            +V R A+L  + +  +AA EIA RSRGTPRIA RLLRRVRD+A+V     IT E A AA
Sbjct: 224 KVVTRAARLLDIDIKADAAKEIASRSRGTPRIANRLLRRVRDYADVHSGGVITVEAAKAA 283

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           LL   +D+ G D+LD   L  + R  GGGPVG+ T++  + E    +E++ EPY+I+ G 
Sbjct: 284 LLVFDVDEKGLDRLDRAVLDALVRGHGGGPVGVSTLALAVGEEPTTVEEVCEPYLIRAGM 343

Query: 310 IQRTPRGRLLMPIAWQHLGIDIPH 333
           I RTPRGR+    AW+H G++ P 
Sbjct: 344 IARTPRGRVATAEAWKHQGLEPPE 367


>gi|262202232|ref|YP_003273440.1| Holliday junction DNA helicase RuvB [Gordonia bronchialis DSM
           43247]
 gi|262085579|gb|ACY21547.1| Holliday junction DNA helicase RuvB [Gordonia bronchialis DSM
           43247]
          Length = 363

 Score =  331 bits (848), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 166/335 (49%), Positives = 228/335 (68%), Gaps = 5/335 (1%)

Query: 3   DREGLLSRNVS----QEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           DRE    R VS    + D D+   LRPR+L EF GQ   C  L++ +  AK R    DH+
Sbjct: 5   DREFTEDREVSALPVRSDGDLDAGLRPRSLAEFIGQPRVCEQLELVLHGAKGRGGTPDHI 64

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKT+LA ++A E+G   R TSGP + +AGDLAA+L+NL + DVLFIDEIHR+
Sbjct: 65  LLSGPPGLGKTSLAMIIAAEMGAAIRVTSGPALERAGDLAAMLSNLVEGDVLFIDEIHRI 124

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           +   EE+LY AMEDF++D++VG+GP A S+ ++++ FTL+ ATTR G LT PL+DRFG  
Sbjct: 125 ARPAEEMLYLAMEDFRVDVVVGKGPGATSIPLDVAPFTLVGATTRSGSLTGPLRDRFGFT 184

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
             + FY+  +L  +++R A + G+ + D+AA EIA RSRGTPRIA RLLRRVRD+AEV  
Sbjct: 185 AHMEFYDTTELVHVLRRSAGILGIVLGDDAASEIASRSRGTPRIANRLLRRVRDYAEVRG 244

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
             TIT + A AAL    +D++GFD+LD   L  + R FGGGPVG+ T++  + E    +E
Sbjct: 245 DGTITVDTARAALAVYDVDELGFDRLDRAVLNALIRAFGGGPVGVSTLAVAVGEEPATVE 304

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++ EP++++ G + RTPRGR+    AW HLG+  P
Sbjct: 305 EVCEPFLVRAGMVARTPRGRVATAAAWHHLGLTPP 339


>gi|260102900|ref|ZP_05753137.1| crossover junction endoribonuclease subunit B [Lactobacillus
           helveticus DSM 20075]
 gi|260083289|gb|EEW67409.1| crossover junction endoribonuclease subunit B [Lactobacillus
           helveticus DSM 20075]
 gi|328462818|gb|EGF34685.1| Holliday junction DNA helicase RuvB [Lactobacillus helveticus MTCC
           5463]
          Length = 338

 Score =  331 bits (848), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 166/320 (51%), Positives = 223/320 (69%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           S+E+A    LRP+TL+++ GQ      + ++I+AAK R EALDHVL  GPPGLGKTTLA 
Sbjct: 16  SEEEAMELSLRPQTLDQYLGQKRVKKEMSIYIKAAKQRDEALDHVLLYGPPGLGKTTLAF 75

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           V+A ELGV+ +STSGP I KAGDL ALL++L+  DVLFIDEIHRL+  VEE+LY AMED+
Sbjct: 76  VIANELGVHLKSTSGPAIEKAGDLVALLSDLDPGDVLFIDEIHRLAKPVEEVLYSAMEDY 135

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            +D+++GEG +  +V + L  FTLI ATT  G L+ PL+DRFGI   + +Y I++L+ IV
Sbjct: 136 YIDIVIGEGQTTHAVHVPLPPFTLIGATTLAGQLSAPLRDRFGIVEHMQYYTIDELEKIV 195

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           QR + +   ++  EAA E+A RSRGTPR+A R L+RVRDFAEV   KTI+    + AL +
Sbjct: 196 QRSSDVFHTSIAPEAAHELARRSRGTPRVANRFLKRVRDFAEVKGEKTISLATTEGALKQ 255

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D  G DQ D R L  +   + GGPVGI T++A + E  + IE L EPY++Q GFI  
Sbjct: 256 LQVDDEGLDQTDRRLLRTMIEGYNGGPVGIRTLAANVGEDMETIESLYEPYLLQHGFILL 315

Query: 313 TPRGRLLMPIAWQHLGIDIP 332
            PRGR++   A+  LG+ +P
Sbjct: 316 GPRGRMVTDKAYLQLGLPVP 335


>gi|225851290|ref|YP_002731524.1| holliday junction DNA helicase RuvB [Persephonella marina EX-H1]
 gi|225646422|gb|ACO04608.1| holliday junction DNA helicase RuvB [Persephonella marina EX-H1]
          Length = 321

 Score =  330 bits (847), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 162/304 (53%), Positives = 222/304 (73%), Gaps = 1/304 (0%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           +E  DI L RP++++++ GQ E    +K+F++A+K   + LDH+L  GPPGLGKT+LAQV
Sbjct: 6   EESFDIDL-RPKSIDDYIGQDEVKKQIKIFVDASKKTGKTLDHILIGGPPGLGKTSLAQV 64

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +ARELG N   TSGPV+ K GD+A +L++LE+ D+LFIDEIHRL+  VEE LYPAMEDF 
Sbjct: 65  IARELGKNIVFTSGPVLEKKGDIAGILSSLEEGDILFIDEIHRLNPSVEEALYPAMEDFC 124

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           LD+++G+G S+RSV+I++  FTLI ATTR G+LT+PL  RFGI + +++Y+ + L  IV 
Sbjct: 125 LDIIIGKGSSSRSVRIDIPPFTLIGATTRSGMLTSPLISRFGIILHIDYYDTDSLTRIVL 184

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R AK+ G+ +T+  A EIA RSRGTPRIA R L+RV DFA V    T+T + A  AL  L
Sbjct: 185 RSAKILGIKITENGAREIARRSRGTPRIANRFLKRVYDFAVVKKDGTVTEDTAREALDFL 244

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            ID  G D  D +YL +I   F G PVG+ T+S+ LSE R  IE++IEP++++ GFI+RT
Sbjct: 245 GIDSYGLDSRDRKYLQIIIEKFNGKPVGLNTLSSALSEDRYTIEEIIEPFLLRSGFIERT 304

Query: 314 PRGR 317
           P+GR
Sbjct: 305 PKGR 308


>gi|312872871|ref|ZP_07732933.1| Holliday junction DNA helicase RuvB [Lactobacillus iners LEAF
           2062A-h1]
 gi|312873748|ref|ZP_07733793.1| Holliday junction DNA helicase RuvB [Lactobacillus iners LEAF
           2052A-d]
 gi|311090746|gb|EFQ49145.1| Holliday junction DNA helicase RuvB [Lactobacillus iners LEAF
           2052A-d]
 gi|311091605|gb|EFQ49987.1| Holliday junction DNA helicase RuvB [Lactobacillus iners LEAF
           2062A-h1]
          Length = 334

 Score =  330 bits (847), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 168/334 (50%), Positives = 229/334 (68%), Gaps = 1/334 (0%)

Query: 2   MDREGLLS-RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M ++ L S  +   E A    LRP  L ++ GQ +  S + ++I+AAK R E+LDHVL  
Sbjct: 1   MTKDNLFSGESTPVEQATELSLRPSNLSQYIGQEKVKSEMAIYIKAAKQRDESLDHVLLY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTT+A V+A ELGV  +STSGP I KAGDL ALL+ L+  DVLFIDEIHRL+  
Sbjct: 61  GPPGLGKTTMAFVIANELGVTLKSTSGPAIDKAGDLVALLSELKPGDVLFIDEIHRLAKT 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILY AMEDF +D+MVGEG +A +V + LS FTLI ATTR G L+ PL+DRFGI   +
Sbjct: 121 VEEILYSAMEDFYVDIMVGEGSAAHAVHVPLSPFTLIGATTRAGQLSAPLRDRFGIVEHM 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y  ++L+ I++R +++    +  EAA E+A RSRGTPR+A RLL+R+RDFAEV    +
Sbjct: 181 QYYSEDELQQIIERSSRVLETGINIEAAHELARRSRGTPRVANRLLKRIRDFAEVNGETS 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I+      AL +L +D  G DQ+D + L ++   + GGPVGI+T++A + E  + I ++ 
Sbjct: 241 ISLLTTKHALAKLEVDDEGLDQIDRKILKIMINCYHGGPVGIKTLAANIGEDVETISEVY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           EPY++Q+GFI RTPRGR+    A+  LGI +  R
Sbjct: 301 EPYLLQKGFISRTPRGRVANAKAYVQLGISLDTR 334


>gi|81299645|ref|YP_399853.1| Holliday junction DNA helicase RuvB [Synechococcus elongatus PCC
           7942]
 gi|97190395|sp|Q31Q03|RUVB_SYNE7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|81168526|gb|ABB56866.1| Holliday junction DNA helicase subunit RuvB [Synechococcus
           elongatus PCC 7942]
          Length = 375

 Score =  330 bits (847), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 166/312 (53%), Positives = 214/312 (68%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L ++ GQ E    L + I AAK+R E+LDH+L  GPPGLGKTT+A V+A E+GV 
Sbjct: 48  IRPQRLADYIGQPELKDVLGIAIAAAKSRQESLDHLLLYGPPGLGKTTMALVLATEMGVQ 107

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R T+ P + +  D+  LL NL+  DVLFIDEIHRL  + EEILYPAMEDF+LD+ +G+G
Sbjct: 108 CRITTAPALERPRDIVGLLVNLQPGDVLFIDEIHRLPKVTEEILYPAMEDFRLDITIGKG 167

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            SAR+  I L  FTL+ ATT++G LT+PL+DRFG+  RL FYE+E L  IVQR A+L   
Sbjct: 168 QSARTRSITLQPFTLVGATTQIGALTSPLRDRFGLVQRLRFYEVEALTDIVQRTARLLNT 227

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +    A EIA RSRGTPRIA RLLRRVRD+A V     IT  IA  AL    +D  G D
Sbjct: 228 PLDQAGAEEIAKRSRGTPRIANRLLRRVRDYAAVKAPGPITGAIAATALELYNVDPCGLD 287

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             D R L+ +  NFGGGPVG+ET++A   E    +E++ EPY++Q G++QRTPRGR+  P
Sbjct: 288 WTDRRLLSHLIENFGGGPVGLETLAAATGEDAQTVEEVYEPYLLQIGYLQRTPRGRVATP 347

Query: 322 IAWQHLGIDIPH 333
            AW+HLG + P 
Sbjct: 348 AAWRHLGYEPPQ 359


>gi|17230386|ref|NP_486934.1| Holliday junction DNA helicase RuvB [Nostoc sp. PCC 7120]
 gi|20140065|sp|Q8YT32|RUVB_ANASP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|17131988|dbj|BAB74593.1| Holliday junction DNA helicase [Nostoc sp. PCC 7120]
          Length = 366

 Score =  330 bits (847), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 161/312 (51%), Positives = 218/312 (69%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+   ++ GQ +    L + I+AAK+R E LDH+L  GPPGLGKTT+A ++A E+GVN
Sbjct: 49  IRPQRFADYIGQKDLKDVLDIAIKAAKSRGEVLDHLLLYGPPGLGKTTMAMILASEMGVN 108

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           ++ TS P + +  D+  LL NL+  D+LFIDEIHRLS + EEILYPAMED++LD+ VG+G
Sbjct: 109 YKITSAPALERPRDIVGLLVNLKPGDILFIDEIHRLSRMTEEILYPAMEDYRLDITVGKG 168

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            SAR   I LS+FTL+ ATTRVG LT+PL+DRFG+  +L FYE+++L  IV R A+L   
Sbjct: 169 SSARIRSIPLSKFTLVGATTRVGALTSPLRDRFGLIQKLRFYEVDELSQIVLRSAQLLQT 228

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            VTD+ A EIA RSRGTPRIA RLL+RVRD+A+V     +++ IA  AL    +D  G D
Sbjct: 229 QVTDDGATEIARRSRGTPRIANRLLKRVRDYAQVKSCAEVSQNIAAEALQLFQVDPCGLD 288

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             D R L++I   F GGPVG+ETI+A   E    IE++ EPY++Q G++ RTPRGR    
Sbjct: 289 WTDRRMLSVIIEQFNGGPVGLETIAAATGEDTQTIEEVYEPYLMQIGYLSRTPRGRTATK 348

Query: 322 IAWQHLGIDIPH 333
            A++H+G   P+
Sbjct: 349 AAYKHMGFTPPN 360


>gi|86150115|ref|ZP_01068343.1| Holliday junction DNA helicase RuvB [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|86152906|ref|ZP_01071111.1| Holliday junction DNA helicase RuvB [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|88596151|ref|ZP_01099388.1| Holliday junction DNA helicase RuvB [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|121612638|ref|YP_001001020.1| Holliday junction DNA helicase RuvB [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|167005923|ref|ZP_02271681.1| Holliday junction DNA helicase B [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|218562971|ref|YP_002344750.1| Holliday junction DNA helicase RuvB [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|20140318|sp|Q9PMT7|RUVB_CAMJE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|166231480|sp|A1W0X9|RUVB_CAMJJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|85839561|gb|EAQ56822.1| Holliday junction DNA helicase RuvB [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|85843791|gb|EAQ61001.1| Holliday junction DNA helicase RuvB [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|87249952|gb|EAQ72911.1| Holliday junction DNA helicase RuvB [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|88190992|gb|EAQ94964.1| Holliday junction DNA helicase RuvB [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|112360677|emb|CAL35474.1| holliday junction DNA helicase [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|284926582|gb|ADC28934.1| Holliday junction DNA helicase RuvB [Campylobacter jejuni subsp.
           jejuni IA3902]
 gi|315928097|gb|EFV07416.1| holliday junction DNA helicase RuvB [Campylobacter jejuni subsp.
           jejuni DFVF1099]
          Length = 335

 Score =  330 bits (847), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 157/309 (50%), Positives = 223/309 (72%), Gaps = 1/309 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP   + + GQ     NL VFI AAK R E LDH+LF GP GLGKTTLA +++ E+  N
Sbjct: 20  LRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSAN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            ++T+ P+I K+GDLAA+LTNL + D+LFIDEIHRLS  +EE+LYPAMED++LD+++G G
Sbjct: 80  IKTTAAPMIEKSGDLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+A+++KI+L +FTLI ATTR G+L+NPL+DRFG+  RL FY+  +L  I+Q+ A     
Sbjct: 140 PAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
              ++AA EIA RSR TPRIA RLL+RVRDFA+V   + IT + A+ AL  L ++++GFD
Sbjct: 200 TCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIITEKRANEALNSLGVNELGFD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +DLRYL ++       P+G+ +I+A LSE  + IED+IEPY++  G+I+RT +GR+   
Sbjct: 260 AMDLRYLELLTAA-KQKPIGLASIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIASA 318

Query: 322 IAWQHLGID 330
            ++  L ++
Sbjct: 319 KSYSALKLN 327


>gi|15644476|ref|NP_229528.1| Holliday junction DNA helicase RuvB [Thermotoga maritima MSB8]
 gi|2498878|sp|Q56313|RUVB_THEMA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|15825804|pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
           Migration Motor
 gi|4982307|gb|AAD36795.1|AE001812_5 Holliday junction DNA helicase [Thermotoga maritima MSB8]
 gi|1063668|gb|AAB03727.1| RuvB protein [Thermotoga maritima]
          Length = 334

 Score =  330 bits (847), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 161/318 (50%), Positives = 220/318 (69%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           D+ +  LRP++L+EF GQ      L + +EAAK R E LDHVL  GPPGLGKTTLA ++A
Sbjct: 13  DSGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIA 72

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
            EL  N   TSGPV+ K GD+AA+LT+LE  DVLFIDEIHRL+  VEE+LY A+EDFQ+D
Sbjct: 73  SELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQID 132

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           +M+G+GPSA+S++I++  FTL+ ATTR GLL++PL+ RFGI + L+FY +++LK I++R 
Sbjct: 133 IMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRA 192

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255
           A L  + + D AA  IA RSRGTPRIA RL +RVRD   V  A  I  +I    +  L I
Sbjct: 193 ASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLNI 252

Query: 256 DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR 315
           D  G D+ D + L  I   + GGPVG+  ++A L    D + ++ EPY++Q GF+ RTPR
Sbjct: 253 DDEGLDEFDRKILKTIIEIYRGGPVGLNALAASLGVEADTLSEVYEPYLLQAGFLARTPR 312

Query: 316 GRLLMPIAWQHLGIDIPH 333
           GR++   A++HL  ++P 
Sbjct: 313 GRIVTEKAYKHLKYEVPE 330


>gi|46198346|ref|YP_004013.1| Holliday junction DNA helicase B [Thermus thermophilus HB27]
 gi|47606090|sp|P61537|RUVB_THET2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|46195968|gb|AAS80386.1| holliday junction DNA helicase ruvB [Thermus thermophilus HB27]
          Length = 336

 Score =  330 bits (846), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 179/332 (53%), Positives = 234/332 (70%), Gaps = 4/332 (1%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M R G+    +S    D   LRP+TL+E+ GQ      L+V++EAAKAR E L+H+L  G
Sbjct: 1   MRRTGI---RLSWRSVDDLALRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFG 57

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTN-LEDRDVLFIDEIHRLSII 120
           PPGLGKTTLA V+A ELGVN R TSGP I K GDLAA+L N LE+ D+LFIDEIHRLS  
Sbjct: 58  PPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILANSLEEGDILFIDEIHRLSRQ 117

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            EE LYPAMEDF +D+++G+GP+AR++++ L RFTLI ATTR GL+T PL  RFGI   L
Sbjct: 118 AEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHL 177

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y  E+L   V R A+L G+ +T+EAA EI  RSRGT R+A RL RRVRDFA+VA  + 
Sbjct: 178 EYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEV 237

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           ITRE A  AL  L +D++G ++ D   L ++   FGGGPVG+ T++  LSE    +E++ 
Sbjct: 238 ITRERALEALAALGLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVH 297

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EPY+I+QG ++RTPRGR+   +A++HLG   P
Sbjct: 298 EPYLIRQGLLKRTPRGRVATELAYRHLGYPPP 329


>gi|116513151|ref|YP_812058.1| Holliday junction DNA helicase B [Lactococcus lactis subsp.
           cremoris SK11]
 gi|123025084|sp|Q02VS7|RUVB_LACLS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|116108805|gb|ABJ73945.1| Holliday junction DNA helicase subunit RuvB [Lactococcus lactis
           subsp. cremoris SK11]
          Length = 333

 Score =  330 bits (846), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 163/323 (50%), Positives = 224/323 (69%), Gaps = 1/323 (0%)

Query: 7   LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           +L++   +ED  I   LRP+   ++ GQ +    L++FI+AAK R E LDHVL  GPPGL
Sbjct: 4   ILNKEPMEEDYGIEKSLRPQFFNQYIGQDKVKEQLEIFIKAAKMREEVLDHVLLFGPPGL 63

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTT+A V+A ELGVN + T+GP I K GDL A+L  LE  DVLFIDEIHR+ + VEE+L
Sbjct: 64  GKTTMAFVIANELGVNIKQTAGPAIEKPGDLVAILNELEPGDVLFIDEIHRMPMQVEEVL 123

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           Y AMEDF +D+M+G G  +RSV ++L  FTL+ ATTR G+L+NPL+ RFGI   + +Y+ 
Sbjct: 124 YSAMEDFYIDIMLGSGDGSRSVHLDLPPFTLVGATTRAGMLSNPLRARFGISSHMEYYQE 183

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
            DL+ IV+R A +  + V D AA EIA+RSRGTPRIA RLL+RVRDFA++     + + I
Sbjct: 184 RDLEEIVKRTADIFEVEVIDNAAIEIALRSRGTPRIANRLLKRVRDFAQIMGDGRVDKAI 243

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
            D AL  L +D  G D +D + L  +   + GGPVGI T++  ++E R+ +ED+ EPY+I
Sbjct: 244 TDKALTILDVDAAGLDYIDQKILRTMIEMYHGGPVGIGTLAVNIAEDRETVEDMYEPYLI 303

Query: 306 QQGFIQRTPRGRLLMPIAWQHLG 328
           Q+GF+ RT +GR +   A++HLG
Sbjct: 304 QKGFLMRTKQGRKVTQRAYEHLG 326


>gi|42523917|ref|NP_969297.1| Holliday junction DNA helicase B [Bdellovibrio bacteriovorus HD100]
 gi|47606082|sp|P61529|RUVB_BDEBA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|39576124|emb|CAE80290.1| Holliday junction DNA helicase RuvB [Bdellovibrio bacteriovorus
           HD100]
          Length = 329

 Score =  330 bits (846), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 160/302 (52%), Positives = 219/302 (72%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+  E+F GQ +    LKVF+ AAK R E+LDHVL  GPPGLGKTTL++++A ++G  
Sbjct: 20  LRPQKFEDFPGQDDVKEKLKVFVAAAKHRGESLDHVLLCGPPGLGKTTLSKIIANDMGAE 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TS P I K GDLAA+LT+L+   VLFIDEIHRLS  VEE LY AMED+ +D++ GEG
Sbjct: 80  IKMTSAPAIDKKGDLAAILTSLKPHSVLFIDEIHRLSRHVEEYLYTAMEDYYIDIVTGEG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
             ARS+K  L+ FTL+ ATTR GLL  P +DRFGI  RL FY+ + L+ I+ R A++  +
Sbjct: 140 LGARSMKFTLAPFTLVGATTRAGLLNPPFRDRFGIVERLQFYDKDALRQILMRSAEILKV 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + +E A E+A RSRGTPR+A RLL+RVRD+A+V     ++++IA  AL +L +D+ G D
Sbjct: 200 EIDEEGAEEVARRSRGTPRVANRLLKRVRDYAQVKGNGVVSKDIAVYALNQLGVDQYGLD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D R L++I   + GGPVGI+TI+A LSE RD +E++ EP++IQ+GFIQ+T RGR++  
Sbjct: 260 LMDRRILSLIQDKYAGGPVGIDTIAAALSEERDTLEEVYEPFLIQEGFIQKTQRGRVITE 319

Query: 322 IA 323
            A
Sbjct: 320 FA 321


>gi|326329830|ref|ZP_08196150.1| holliday junction DNA helicase RuvB [Nocardioidaceae bacterium
           Broad-1]
 gi|325952416|gb|EGD44436.1| holliday junction DNA helicase RuvB [Nocardioidaceae bacterium
           Broad-1]
          Length = 360

 Score =  330 bits (846), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 163/328 (49%), Positives = 226/328 (68%), Gaps = 4/328 (1%)

Query: 9   SRNVSQEDADI----SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           S  +++ D D     + LRP++L+E  GQ      L + +EAA+ R  A DHVL  GPPG
Sbjct: 16  SLTIAEADGDDRAVEAALRPKSLDELIGQQRVREQLSLVLEAARQRERAPDHVLLSGPPG 75

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLA ++A E+    R TSGP I  AGDLAA+L+ L + +VLF+DEIHR+S   EE+
Sbjct: 76  LGKTTLAMIIAAEMSAPLRITSGPAITHAGDLAAILSGLNEGEVLFVDEIHRMSRPAEEM 135

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LY AMEDF++D+++G+GP A ++ I+L  FTL+ ATTR GLL  PL+DRFG    L  Y+
Sbjct: 136 LYLAMEDFRVDVVIGKGPGATAIPIDLPPFTLVGATTRAGLLPGPLRDRFGFTGHLELYD 195

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
             DL+ IV+R A L  + + D+ A EIA RSRGTPRIA RLLRRVRD+A+V    T+T++
Sbjct: 196 PADLELIVRRSAGLLEVTLRDDGAAEIAGRSRGTPRIANRLLRRVRDYAQVKADGTVTQQ 255

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +A  AL    +D +G D+LDL  L  + R FGGGPVGI T++  + E R+ +E++ EP++
Sbjct: 256 VAQKALDLYEVDPLGLDRLDLAVLDALCRRFGGGPVGISTLAVAVGEERETVEEVAEPFL 315

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++ GF+ RTPRGR+  P AW+HLG+ +P
Sbjct: 316 VRSGFLARTPRGRVATPAAWEHLGLPVP 343


>gi|259501310|ref|ZP_05744212.1| crossover junction endoribonuclease subunit B [Lactobacillus iners
           DSM 13335]
 gi|259167280|gb|EEW51775.1| crossover junction endoribonuclease subunit B [Lactobacillus iners
           DSM 13335]
          Length = 321

 Score =  330 bits (846), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 163/313 (52%), Positives = 221/313 (70%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP  L ++ GQ +  S + ++I+AAK R E+LDHVL  GPPGLGKTT+A V+A ELGV 
Sbjct: 9   LRPSNLSQYIGQEKVKSEMAIYIKAAKQRDESLDHVLLYGPPGLGKTTMAFVIANELGVT 68

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            +STSGP I KAGDL ALL+ L+  DVLFIDEIHRL+  VEEILY AMEDF +D+MVGEG
Sbjct: 69  LKSTSGPAIDKAGDLVALLSELKPGDVLFIDEIHRLAKTVEEILYSAMEDFYVDIMVGEG 128

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            +A +V + LS FTLI ATTR G L+ PL+DRFGI   + +Y  ++L+ I++R +++   
Sbjct: 129 SAAHAVHVPLSPFTLIGATTRAGQLSAPLRDRFGIVEHMQYYSEDELQQIIERSSRVLET 188

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  EAA E+A RSRGTPR+A RLL+R+RDFAEV    +I+      AL +L +D  G D
Sbjct: 189 GINIEAAHELARRSRGTPRVANRLLKRIRDFAEVNGETSISLLTTKHALAKLEVDDEGLD 248

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           Q+D + L ++   + GGPVGI+T++A + E  + I ++ EPY++Q+GFI RTPRGR+   
Sbjct: 249 QIDRKILKIMINCYHGGPVGIKTLAANIGEDVETISEVYEPYLLQKGFISRTPRGRVANA 308

Query: 322 IAWQHLGIDIPHR 334
            A+  LGI +  R
Sbjct: 309 KAYVQLGISLDTR 321


>gi|254557083|ref|YP_003063500.1| Holliday junction DNA helicase B [Lactobacillus plantarum JDM1]
 gi|300768016|ref|ZP_07077922.1| crossover junction ATP-dependent DNA helicase RuvB [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|308181077|ref|YP_003925205.1| Holliday junction DNA helicase B [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|254046010|gb|ACT62803.1| Holliday junction DNA helicase B [Lactobacillus plantarum JDM1]
 gi|300494365|gb|EFK29527.1| crossover junction ATP-dependent DNA helicase RuvB [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|308046568|gb|ADN99111.1| Holliday junction DNA helicase B [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 336

 Score =  330 bits (845), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 172/334 (51%), Positives = 225/334 (67%), Gaps = 4/334 (1%)

Query: 2   MDREGLLSRNVSQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           MD + LLS + + +D + SL   LRP+TL ++ GQ      L V+IEAA+ R E+LDHVL
Sbjct: 1   MDDDKLLSGDKA-DDEEASLEKSLRPQTLAQYIGQARVKHELGVYIEAARKREESLDHVL 59

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA V+A E+ VN R+TSGP I K GDL ALL  LE  D+LFIDEIHRL 
Sbjct: 60  LYGPPGLGKTTLAMVIANEMQVNIRTTSGPAIEKPGDLVALLNELEPGDILFIDEIHRLP 119

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            IVEE+LY AMEDF +D++VG+GP+A  V   L  FTLI ATTR G+L+ PL+DRFGI  
Sbjct: 120 KIVEEMLYSAMEDFFVDIVVGQGPTAHPVHFPLPPFTLIGATTRAGMLSAPLRDRFGIVE 179

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
            + +YE+ DL+ IV+R A +   ++    A EIA RSRGTPRIA RL +R+RDFAEVA  
Sbjct: 180 HMAYYEVADLEDIVKRTADIFQTSIKPSGAHEIARRSRGTPRIANRLFKRIRDFAEVADQ 239

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             I   I   +L  L +D  G D+ D + L  +   + GGPVG+ TI+A + E  D I +
Sbjct: 240 DAIDEAIVARSLTYLRVDDAGLDETDNKLLRTMLEYYDGGPVGLATIAANIGEETDTIAE 299

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++EPY++Q GF++RT RGR++    +QHLG   P
Sbjct: 300 VVEPYLLQIGFLKRTQRGRVVTIKGYQHLGFPYP 333


>gi|183982125|ref|YP_001850416.1| Holliday junction DNA helicase RuvB [Mycobacterium marinum M]
 gi|238690933|sp|B2HN63|RUVB_MYCMM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|183175451|gb|ACC40561.1| Holliday junction DNA helicase RuvB [Mycobacterium marinum M]
          Length = 345

 Score =  330 bits (845), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 163/330 (49%), Positives = 229/330 (69%), Gaps = 1/330 (0%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           +RE   +  V   D D+SL RPR+L EF GQ      L++ I+ AK R    DH+L  GP
Sbjct: 7   EREVSPALTVGDGDVDVSL-RPRSLREFIGQPRVREQLQLVIQGAKNRGGTPDHILLSGP 65

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKT+LA ++A ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++   E
Sbjct: 66  PGLGKTSLAMIIAAELGSSLRMTSGPALERAGDLAAMLSNLVEHDVLFIDEIHRIARPAE 125

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LY AMEDF++D++VG+GP A S+ ++++ FTL+ ATTR G LT PL+DRFG    ++F
Sbjct: 126 EMLYLAMEDFRVDVVVGKGPGATSIPLDVAPFTLVGATTRSGALTGPLRDRFGFTAHMDF 185

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           YE  +L+ ++ R A + G+ +  +A  EIA RSRGTPRIA RLLRRVRDFAEV     IT
Sbjct: 186 YEPAELERVLVRSAGILGIQLGADAGAEIARRSRGTPRIANRLLRRVRDFAEVRADGVIT 245

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           R++A AAL    +D++G D+LD   L+ + R+F GGPVG+ T++  + E    +E++ EP
Sbjct: 246 RDVAKAALAVYDVDELGLDRLDRAVLSALTRSFSGGPVGVSTLAVAVGEEASTVEEVCEP 305

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++++ G + RTPRGR+   +AW HLG+  P
Sbjct: 306 FLVRAGMVARTPRGRVATALAWTHLGMTPP 335


>gi|24987363|pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
          Length = 318

 Score =  330 bits (845), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 174/312 (55%), Positives = 227/312 (72%), Gaps = 1/312 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+TL+E+ GQ      L+V++EAAKAR E L+H+L  GPPGLGKTTLA V+A ELGVN
Sbjct: 6   LRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVN 65

Query: 82  FRSTSGPVIAKAGDLAALLTN-LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
            R TSGP I K GDLAA+L N LE+ D+LFIDEIHRLS   EE LYPAMEDF +D+++G+
Sbjct: 66  LRVTSGPAIEKPGDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQ 125

Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
           GP+AR++++ L RFTLI ATTR GL+T PL  RFGI   L +Y  E+L   V R A+L G
Sbjct: 126 GPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLG 185

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGF 260
           + +T+EAA EI  RSRGT R+A RL RRVRDFA+VA  + ITRE A  AL  L +D++G 
Sbjct: 186 VRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAALGLDELGL 245

Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320
           ++ D   L ++   FGGGPVG+ T++  LSE    +E++ EPY+I+QG ++RTPRGR+  
Sbjct: 246 EKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRTPRGRVAT 305

Query: 321 PIAWQHLGIDIP 332
            +A++HLG   P
Sbjct: 306 ELAYRHLGYPPP 317


>gi|28378878|ref|NP_785770.1| Holliday junction DNA helicase B [Lactobacillus plantarum WCFS1]
 gi|38258512|sp|Q88V03|RUVB_LACPL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|28271715|emb|CAD64621.1| holliday junction DNA helicase RuvB [Lactobacillus plantarum WCFS1]
          Length = 336

 Score =  330 bits (845), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 172/334 (51%), Positives = 225/334 (67%), Gaps = 4/334 (1%)

Query: 2   MDREGLLSRNVSQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           MD + LLS + + +D + SL   LRP+TL ++ GQ      L V+IEAA+ R E+LDHVL
Sbjct: 1   MDDDKLLSGDKA-DDEEASLEKSLRPQTLAQYIGQARVKHELGVYIEAARKREESLDHVL 59

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA V+A E+ VN R+TSGP I K GDL ALL  LE  D+LFIDEIHRL 
Sbjct: 60  LYGPPGLGKTTLAMVIANEMQVNIRTTSGPAIEKPGDLVALLNELEPGDILFIDEIHRLP 119

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            IVEE+LY AMEDF +D++VG+GP+A  V   L  FTLI ATTR G+L+ PL+DRFGI  
Sbjct: 120 KIVEEMLYSAMEDFFVDIVVGQGPTAHPVHFPLPPFTLIGATTRAGMLSAPLRDRFGIVE 179

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
            + +YE+ DL+ IV+R A +   ++    A EIA RSRGTPRIA RL +R+RDFAEVA  
Sbjct: 180 HMAYYEVADLEDIVKRTADIFQTSIKPSGAHEIARRSRGTPRIANRLFKRIRDFAEVADQ 239

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             I   I   +L  L +D  G D+ D + L  +   + GGPVG+ TI+A + E  D I +
Sbjct: 240 DAIDEPIVARSLTYLRVDDAGLDETDNKLLRTMLEYYDGGPVGLATIAANIGEETDTIAE 299

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++EPY++Q GF++RT RGR++    +QHLG   P
Sbjct: 300 VVEPYLLQIGFLKRTQRGRVVTIKGYQHLGFPYP 333


>gi|148270159|ref|YP_001244619.1| Holliday junction DNA helicase RuvB [Thermotoga petrophila RKU-1]
 gi|170288886|ref|YP_001739124.1| Holliday junction DNA helicase RuvB [Thermotoga sp. RQ2]
 gi|281412499|ref|YP_003346578.1| Holliday junction DNA helicase RuvB [Thermotoga naphthophila
           RKU-10]
 gi|166231566|sp|A5ILH0|RUVB_THEP1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|238688750|sp|B1LAU3|RUVB_THESQ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|147735703|gb|ABQ47043.1| Holliday junction DNA helicase subunit RuvB [Thermotoga petrophila
           RKU-1]
 gi|170176389|gb|ACB09441.1| Holliday junction DNA helicase RuvB [Thermotoga sp. RQ2]
 gi|281373602|gb|ADA67164.1| Holliday junction DNA helicase RuvB [Thermotoga naphthophila
           RKU-10]
          Length = 334

 Score =  330 bits (845), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 161/318 (50%), Positives = 219/318 (68%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           D+ +  LRP++L+EF GQ      L + +EAAK R E LDHVL  GPPGLGKTTLA ++A
Sbjct: 13  DSGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIA 72

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
            EL  N   TSGPV+ K GD+AA+LT+LE  DVLFIDEIHRL+  VEE+LY A+EDFQ+D
Sbjct: 73  SELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQID 132

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           +M+G+GPSA+S++I++  FTL+ ATTR GLL++PL+ RFGI + L+FY +++LK I++R 
Sbjct: 133 IMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRA 192

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255
           A L  + + D AA  IA RSRGTPRIA RL +RVRD   V  A  I  +I    +  L I
Sbjct: 193 ASLMDVEIEDSAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLNI 252

Query: 256 DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR 315
           D  G D+ D + L  I   + GGPVG+  ++A L    D + ++ EPY++Q GF+ RTPR
Sbjct: 253 DAEGLDEFDRKILKTIIEIYRGGPVGLNALAASLGVEADTLSEVYEPYLLQAGFLARTPR 312

Query: 316 GRLLMPIAWQHLGIDIPH 333
           GR+    A++HL  ++P 
Sbjct: 313 GRVATEKAYKHLKYEVPE 330


>gi|227894653|ref|ZP_04012458.1| Holliday junction DNA helicase B [Lactobacillus ultunensis DSM
           16047]
 gi|227863548|gb|EEJ70969.1| Holliday junction DNA helicase B [Lactobacillus ultunensis DSM
           16047]
          Length = 341

 Score =  330 bits (845), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 162/311 (52%), Positives = 219/311 (70%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+TL ++ GQ      + ++I+AAK R EALDHVL  GPPGLGKTTLA V+A ELGV+
Sbjct: 28  LRPQTLSQYLGQERVKKEMSIYIKAAKQRDEALDHVLLYGPPGLGKTTLAFVIANELGVH 87

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            +STSGP I KAGDL ALL++L+  DVLFIDEIHRL+  VEE+LY AMED+ +D+++GEG
Sbjct: 88  LKSTSGPAIEKAGDLVALLSDLDPGDVLFIDEIHRLAKPVEEVLYSAMEDYYIDIVIGEG 147

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            +  +V + L  FTLI ATT  G L+ PL+DRFGI   + +Y +++L+ IVQR + +   
Sbjct: 148 QTTHAVHVPLPPFTLIGATTLAGQLSAPLRDRFGIVEHMQYYNVDELEKIVQRSSDVFHT 207

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
           ++  EAA E+A RSRGTPR+A RLL+RVRDFAEV   +TI+    + AL +L +D  G D
Sbjct: 208 SIAPEAAHELARRSRGTPRVANRLLKRVRDFAEVKGERTISLATTENALKQLQVDDEGLD 267

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           Q D + L  +   + GGPVGI T++A + E  + IE L EPY++Q GFI  TPRGR++  
Sbjct: 268 QTDRKLLRTMIEGYNGGPVGIRTLAANIGEDMETIESLYEPYLLQHGFILLTPRGRMVTD 327

Query: 322 IAWQHLGIDIP 332
            A+  LG+ +P
Sbjct: 328 KAYLQLGLPVP 338


>gi|154248851|ref|YP_001409676.1| Holliday junction DNA helicase RuvB [Fervidobacterium nodosum
           Rt17-B1]
 gi|171769318|sp|A7HJD6|RUVB_FERNB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|154152787|gb|ABS60019.1| Holliday junction DNA helicase RuvB [Fervidobacterium nodosum
           Rt17-B1]
          Length = 347

 Score =  330 bits (845), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 160/309 (51%), Positives = 219/309 (70%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E+ GQ      LK+ I+A+K R E LDH+L  GPPGLGKTTLA ++A EL  N
Sbjct: 25  LRPKFLSEYIGQENIKERLKLAIQASKMRGEQLDHILLAGPPGLGKTTLATIIANELNAN 84

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
              TSGP++ K GDLAA+LTNLE  DVLFIDEIHR++  VEEILY AMEDFQ+D+M+G+G
Sbjct: 85  IHVTSGPILEKQGDLAAILTNLEAGDVLFIDEIHRMNRNVEEILYSAMEDFQVDIMIGKG 144

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+++ L  FTLI ATTR GLLT+PL++RFG+   +NFY  E+LK I+ R A++ G 
Sbjct: 145 PAARSIRVELQPFTLIGATTRSGLLTSPLRNRFGMIFEMNFYTQEELKMIITRAAEVMGT 204

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + D+AA  IA RSRGTPRIA RLL+RVRD + V  ++ IT  I +  +  L +D+ G D
Sbjct: 205 LIDDDAALSIAKRSRGTPRIAIRLLKRVRDLSTVRGSENITLNIVEEVMRLLGVDEFGLD 264

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           ++D + L  I   + GGPVG+++++A L    D I ++ EP+++Q GFI R  RGR+   
Sbjct: 265 EMDRKILKTIIEIYKGGPVGLKSLAASLGITEDTISEVYEPFLVQSGFIARGARGRIATE 324

Query: 322 IAWQHLGID 330
            A+++LG +
Sbjct: 325 KAYKYLGYN 333


>gi|284032304|ref|YP_003382235.1| Holliday junction DNA helicase RuvB [Kribbella flavida DSM 17836]
 gi|283811597|gb|ADB33436.1| Holliday junction DNA helicase RuvB [Kribbella flavida DSM 17836]
          Length = 350

 Score =  330 bits (845), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 163/313 (52%), Positives = 217/313 (69%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           S LRPRTL EF GQ      L++ + AA+ R  A DHVL  GPPGLGKTTLA ++A EL 
Sbjct: 23  SALRPRTLAEFGGQRRVSEQLELVLHAARGRRRAPDHVLLSGPPGLGKTTLAMIIAAELS 82

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
              R TSGP I  AGDLAA+L+ L + +VLF+DEIHR+S   EE+LY AMEDF++D++VG
Sbjct: 83  APLRVTSGPAIQHAGDLAAILSGLSEGEVLFLDEIHRMSRPAEELLYMAMEDFRVDVIVG 142

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199
           +GP A ++ + +  FTL+ ATTR GLL  PL+DRFG    L FY   +L+ IV R A L 
Sbjct: 143 KGPGATAIPLEIPPFTLVGATTRAGLLPGPLRDRFGFTGHLEFYAAAELEKIVNRSAALL 202

Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259
            + +T EAA EIA RSRGTPRIA RLLRRVRD+AEV     +T  ++ AAL    +D+MG
Sbjct: 203 DVDITPEAATEIASRSRGTPRIANRLLRRVRDYAEVRADGIVTIALSKAALDLYEVDRMG 262

Query: 260 FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLL 319
            D+LD   L  + R FGGGPVG+ T++  + E R+ +E++ EP++++ G++ RTPRGR+ 
Sbjct: 263 LDRLDRAVLDALCRRFGGGPVGLSTLAVAVGEERETVEEVAEPFLVRSGYLARTPRGRVA 322

Query: 320 MPIAWQHLGIDIP 332
            P AW+HLG+ +P
Sbjct: 323 TPAAWRHLGLTVP 335


>gi|15825805|pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
          Length = 334

 Score =  330 bits (845), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 160/318 (50%), Positives = 220/318 (69%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           D+ +  LRP++L+EF GQ      L + +EAAK R E LDHVL  GPPGLGKTTLA ++A
Sbjct: 13  DSGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIA 72

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
            EL  N   TSGPV+ K GD+AA+LT+LE  DVLFIDEIHRL+  VEE+LY A+EDFQ+D
Sbjct: 73  SELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQID 132

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           +M+G+GPSA+S++I++  FTL+ +TTR GLL++PL+ RFGI + L+FY +++LK I++R 
Sbjct: 133 IMIGKGPSAKSIRIDIQPFTLVGSTTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRA 192

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255
           A L  + + D AA  IA RSRGTPRIA RL +RVRD   V  A  I  +I    +  L I
Sbjct: 193 ASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLNI 252

Query: 256 DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR 315
           D  G D+ D + L  I   + GGPVG+  ++A L    D + ++ EPY++Q GF+ RTPR
Sbjct: 253 DDEGLDEFDRKILKTIIEIYRGGPVGLNALAASLGVEADTLSEVYEPYLLQAGFLARTPR 312

Query: 316 GRLLMPIAWQHLGIDIPH 333
           GR++   A++HL  ++P 
Sbjct: 313 GRIVTEKAYKHLKYEVPE 330


>gi|281492889|ref|YP_003354869.1| Holliday junction DNA helicase RuvB [Lactococcus lactis subsp.
           lactis KF147]
 gi|38258953|sp|Q9CDL3|RUVB_LACLA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|281376541|gb|ADA66027.1| Holliday junction DNA helicase RuvB [Lactococcus lactis subsp.
           lactis KF147]
 gi|326407800|gb|ADZ64871.1| holliday junction DNA helicase RuvB [Lactococcus lactis subsp.
           lactis CV56]
          Length = 333

 Score =  330 bits (845), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 163/323 (50%), Positives = 224/323 (69%), Gaps = 1/323 (0%)

Query: 7   LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           +L++   +ED  I   LRP+   ++ GQ +    L++FI+AAK R E LDHVL  GPPGL
Sbjct: 4   ILNKEPMEEDYGIEKSLRPQFFNQYIGQDKVKEQLEIFIKAAKMREEVLDHVLLFGPPGL 63

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTT+A V+A ELGVN + T+GP I K GDL A+L  LE  DVLFIDEIHR+ + VEE+L
Sbjct: 64  GKTTMAFVIANELGVNIKQTAGPAIEKPGDLVAILNELEPGDVLFIDEIHRMPMQVEEVL 123

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           Y AMEDF +D+M+G G  +RSV ++L  FTL+ ATTR G+L+NPL+ RFGI   + +Y+ 
Sbjct: 124 YSAMEDFYIDIMLGSGDGSRSVHLDLPPFTLVGATTRAGMLSNPLRARFGISSHMEYYQE 183

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
            DL+ IV+R A +  + V D AA EIA+RSRGTPRIA RLL+RVRDFA++     + + I
Sbjct: 184 RDLEEIVKRTADIFEVEVIDNAALEIALRSRGTPRIANRLLKRVRDFAQIMGDGRVDKAI 243

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
            D AL  L +D  G D +D + L  +   + GGPVGI T++  ++E R+ +ED+ EPY+I
Sbjct: 244 TDKALSILDVDAAGLDYIDQKILRTMIEMYHGGPVGIGTLAVNIAEDRETVEDMYEPYLI 303

Query: 306 QQGFIQRTPRGRLLMPIAWQHLG 328
           Q+GF+ RT +GR +   A++HLG
Sbjct: 304 QKGFLMRTKQGRKVTQRAYEHLG 326


>gi|125625243|ref|YP_001033726.1| Holliday junction DNA helicase B [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|166231499|sp|A2RP06|RUVB_LACLM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|124494051|emb|CAL99051.1| holliday junction DNA helicase ruvB [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|300072053|gb|ADJ61453.1| Holliday junction DNA helicase RuvB [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 333

 Score =  330 bits (845), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 163/323 (50%), Positives = 224/323 (69%), Gaps = 1/323 (0%)

Query: 7   LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           +L++   +ED  I   LRP+   ++ GQ +    L++FI+AAK R E LDHVL  GPPGL
Sbjct: 4   ILNKEPMEEDYGIEKSLRPQFFNQYIGQDKVKEQLEIFIKAAKMREEVLDHVLLFGPPGL 63

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTT+A V+A ELGVN + T+GP I K GDL A+L  LE  DVLFIDEIHR+ + VEE+L
Sbjct: 64  GKTTMAFVIANELGVNIKQTAGPAIEKPGDLVAILNELEPGDVLFIDEIHRMPMQVEEVL 123

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           Y AMEDF +D+M+G G  +RSV ++L  FTL+ ATTR G+L+NPL+ RFGI   + +Y+ 
Sbjct: 124 YSAMEDFYIDIMLGSGDGSRSVHLDLPPFTLVGATTRAGMLSNPLRARFGISSHMEYYQE 183

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
            DL+ IV+R A +  + V D AA EIA+RSRGTPRIA RLL+RVRDFA++     + + I
Sbjct: 184 RDLEEIVKRTADIFEVEVIDNAAMEIALRSRGTPRIANRLLKRVRDFAQIMGDGRVDKAI 243

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
            D AL  L +D  G D +D + L  +   + GGPVGI T++  ++E R+ +ED+ EPY+I
Sbjct: 244 TDKALTILDVDAAGLDYIDQKILRTMIEIYHGGPVGIGTLAVNIAEDRETVEDMYEPYLI 303

Query: 306 QQGFIQRTPRGRLLMPIAWQHLG 328
           Q+GF+ RT +GR +   A++HLG
Sbjct: 304 QKGFLMRTKQGRKVTQRAYEHLG 326


>gi|325473682|gb|EGC76871.1| Holliday junction ATP-dependent DNA helicase ruvB [Treponema
           denticola F0402]
          Length = 343

 Score =  329 bits (844), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 158/311 (50%), Positives = 217/311 (69%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPR+L +F GQ +A  NL VFI+AA+ R E+LDH+  +GPPGLGKTTLAQ+ A ELGV+
Sbjct: 22  LRPRSLVDFQGQTKAKENLSVFIKAARERGESLDHLFLIGPPGLGKTTLAQITANELGVD 81

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           F+ T  P + K  DLA +LT L +R V FIDEIHRL   +EE+LY AMED++LD ++G+G
Sbjct: 82  FKVTGAPALDKPKDLAGILTTLTERSVFFIDEIHRLKPAIEEMLYIAMEDYELDWIIGQG 141

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P AR+V+I +  FTL+ ATTR G++++PL  RFGI  R  FY  E+L +I+ R A +  +
Sbjct: 142 PGARTVRIPIPPFTLVGATTRAGMVSSPLISRFGIVQRFEFYSHEELASIISRSASILEI 201

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  +AA  +A  SRGTPR+A RLLRR+RDFA+VA   +I      A L +L ID +G +
Sbjct: 202 EIEKKAAIALARCSRGTPRVANRLLRRMRDFAQVAGKSSIDEMTVAAGLKQLNIDGLGLE 261

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             D + L  I  N+ GGPVG ET++  + E +D +ED  EPY+IQ G +QRTPRGR++  
Sbjct: 262 TYDRQILRSIIENYSGGPVGAETLAISIGESQDTLEDYYEPYLIQSGLLQRTPRGRMVTL 321

Query: 322 IAWQHLGIDIP 332
            A++HLG++ P
Sbjct: 322 KAYEHLGLNPP 332


>gi|55980375|ref|YP_143672.1| Holliday junction DNA helicase RuvB [Thermus thermophilus HB8]
 gi|62287409|sp|Q5SL87|RUVB_THET8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|20330535|dbj|BAA76480.2| RuvB [Thermus thermophilus]
 gi|55771788|dbj|BAD70229.1| RuvB, Holliday junciton DNA helicase [Thermus thermophilus HB8]
          Length = 324

 Score =  329 bits (844), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 174/312 (55%), Positives = 227/312 (72%), Gaps = 1/312 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+TL+E+ GQ      L+V++EAAKAR E L+H+L  GPPGLGKTTLA V+A ELGVN
Sbjct: 6   LRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVN 65

Query: 82  FRSTSGPVIAKAGDLAALLTN-LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
            R TSGP I K GDLAA+L N LE+ D+LFIDEIHRLS   EE LYPAMEDF +D+++G+
Sbjct: 66  LRVTSGPAIEKPGDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQ 125

Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
           GP+AR++++ L RFTLI ATTR GL+T PL  RFGI   L +Y  E+L   V R A+L G
Sbjct: 126 GPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLG 185

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGF 260
           + +T+EAA EI  RSRGT R+A RL RRVRDFA+VA  + ITRE A  AL  L +D++G 
Sbjct: 186 VRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAALGLDELGL 245

Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320
           ++ D   L ++   FGGGPVG+ T++  LSE    +E++ EPY+I+QG ++RTPRGR+  
Sbjct: 246 EKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRTPRGRVAT 305

Query: 321 PIAWQHLGIDIP 332
            +A++HLG   P
Sbjct: 306 ELAYRHLGYPPP 317


>gi|57242121|ref|ZP_00370061.1| Holliday junction DNA helicase RuvB [Campylobacter upsaliensis
           RM3195]
 gi|57017313|gb|EAL54094.1| Holliday junction DNA helicase RuvB [Campylobacter upsaliensis
           RM3195]
          Length = 335

 Score =  329 bits (844), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 159/311 (51%), Positives = 226/311 (72%), Gaps = 1/311 (0%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           S LRP   + + GQ     NL +FI AAK R E LDH+LF GP GLGKTTLA ++A E+ 
Sbjct: 18  SSLRPSNFDGYIGQDNIKKNLHIFINAAKKRGECLDHILFSGPAGLGKTTLANIIATEMR 77

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
            N ++T+ P+I K+GDLAA+LTNL + DVLFIDEIHRLS  +EE+LYPAMEDF+LD+++G
Sbjct: 78  ANIKTTAAPMIEKSGDLAAILTNLSEGDVLFIDEIHRLSPAIEEVLYPAMEDFRLDIIIG 137

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199
            GP+A+++KI+L +FTLI ATTR G+L+NPL+DRFG+  RL FY+ E+L  I+Q+ A   
Sbjct: 138 SGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKNEELALILQKAALKL 197

Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259
                ++AA EIA RSR TPRIA RLL+RVRDFA+V   + I+ + A  AL  L ++++G
Sbjct: 198 NKNCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEENISLQRAYEALNSLGVNELG 257

Query: 260 FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLL 319
           FD +DLRYL ++  +  G  +G+ +I+A LSE  + +ED+IEPY++  G+I+RT +GR+ 
Sbjct: 258 FDSMDLRYLELLT-SAKGKAMGLASIAAALSEDENTVEDVIEPYLLANGYIERTAKGRIA 316

Query: 320 MPIAWQHLGID 330
              +++ L ++
Sbjct: 317 SIKSYRTLKLN 327


>gi|227872462|ref|ZP_03990803.1| crossover junction endoribonuclease subunit B [Oribacterium sinus
           F0268]
 gi|227841693|gb|EEJ51982.1| crossover junction endoribonuclease subunit B [Oribacterium sinus
           F0268]
          Length = 331

 Score =  329 bits (844), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 166/329 (50%), Positives = 234/329 (71%), Gaps = 2/329 (0%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M+R+ L+    S+ED      +RP+ L+++ GQ +    L +FIEAAK R ++LDH LF 
Sbjct: 1   MERK-LIQTEESKEDLSFDPKIRPQFLKDYIGQEKLKETLSIFIEAAKKRKQSLDHCLFY 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTT++ ++A ELGV+ + TSGP I K G++AA+L NL + DVLF+DEIHRL+  
Sbjct: 60  GPPGLGKTTISNIIANELGVHCKITSGPAIEKPGEIAAILNNLSEGDVLFVDEIHRLNRQ 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDF +D+++G+  S RS++++L RFTL+ ATTR GLL+ PL+DRFGI  +L
Sbjct: 120 VEEVLYPAMEDFAIDVLLGKESSTRSIRLDLPRFTLVGATTRAGLLSAPLRDRFGIIGKL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY+ E+L+ IV R AK+  +++ +  A  IA+RSR    +A RLL+RVRDFAE+ +   
Sbjct: 180 EFYKEEELEEIVLRSAKVLSISIDEGGAKSIALRSRVHQVLANRLLKRVRDFAEIKYNGV 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I +E+A+ AL  L +D +G D  D +YL  +   F GGPVG+ET++  L E R  +ED+I
Sbjct: 240 IRKEVAEDALDLLDVDTLGLDTYDRQYLWNLIEKFSGGPVGVETLATSLGEDRGTLEDMI 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           EPY+I QG I RTPRGR+    A+QHLG+
Sbjct: 300 EPYLILQGLIDRTPRGRIATKHAYQHLGL 328


>gi|118617341|ref|YP_905673.1| Holliday junction DNA helicase RuvB [Mycobacterium ulcerans Agy99]
 gi|171460876|sp|A0PPD3|RUVB_MYCUA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|118569451|gb|ABL04202.1| Holliday junction DNA helicase RuvB [Mycobacterium ulcerans Agy99]
          Length = 345

 Score =  329 bits (844), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 163/330 (49%), Positives = 229/330 (69%), Gaps = 1/330 (0%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           +RE   +  V   D D+SL RPR+L EF GQ      L++ I+ AK R    DH+L  GP
Sbjct: 7   EREVSPALTVGDGDVDVSL-RPRSLREFIGQPRVREQLQLVIQGAKNRGGTPDHILLSGP 65

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKT+LA ++A ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++   E
Sbjct: 66  PGLGKTSLAVIIAAELGSSLRMTSGPALERAGDLAAMLSNLVEHDVLFIDEIHRIARPAE 125

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LY AMEDF++D++VG+GP A S+ ++++ FTL+ ATTR G LT PL+DRFG    ++F
Sbjct: 126 EMLYLAMEDFRVDVVVGKGPGATSIPLDVAPFTLVGATTRSGALTGPLRDRFGFTAHMDF 185

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           YE  +L+ ++ R A + G+ +  +A  EIA RSRGTPRIA RLLRRVRDFAEV     IT
Sbjct: 186 YEPAELERVLVRSAGILGIQLGADAGAEIARRSRGTPRIANRLLRRVRDFAEVRADGVIT 245

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           R++A AAL    +D++G D+LD   L+ + R+F GGPVG+ T++  + E    +E++ EP
Sbjct: 246 RDVAKAALAVYDVDELGLDRLDRAVLSALTRSFSGGPVGVSTLAVAVGEEASTVEEVCEP 305

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++++ G + RTPRGR+   +AW HLG+  P
Sbjct: 306 FLVRAGMVARTPRGRVATALAWTHLGMTPP 335


>gi|223039370|ref|ZP_03609659.1| holliday junction DNA helicase RuvB [Campylobacter rectus RM3267]
 gi|222879431|gb|EEF14523.1| holliday junction DNA helicase RuvB [Campylobacter rectus RM3267]
          Length = 382

 Score =  329 bits (844), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 166/324 (51%), Positives = 232/324 (71%), Gaps = 2/324 (0%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MDR   + +   + D ++SL RP   E++ GQ +   NL VFI+AAK R E LDHVLF G
Sbjct: 44  MDRIVEIEKISFENDFEVSL-RPTRFEDYIGQEKIKQNLGVFIKAAKKRGECLDHVLFYG 102

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+GV+ + T+ P+I K+GDLAA+LTNL++ DVLFIDEIHRLS  +
Sbjct: 103 PPGLGKTTLAHIIANEMGVSIKMTAAPMIEKSGDLAAVLTNLQEGDVLFIDEIHRLSPAI 162

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMEDF+LD+++G GP+A+++KI+L +FTLI ATTR G+++ PL+DRFG+  RL 
Sbjct: 163 EEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMISAPLRDRFGMDFRLQ 222

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY  E+L  IVQ  +   G      AA E+A RSR TPRIA RLL+R+RDFAEV   + I
Sbjct: 223 FYTREELARIVQIASVKLGKECEKAAALEVAARSRATPRIALRLLKRIRDFAEVNDEEII 282

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           ++  A  AL  L ++ +GFD++D++YL ++       P+G+ TI+A LSE    +ED+IE
Sbjct: 283 SQPRAKEALDALGVNDIGFDEMDIKYLEILLAA-KRRPMGLSTIAAALSEDEGTVEDVIE 341

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQ 325
           PY++  G+I+RT +GRL    A++
Sbjct: 342 PYLLANGYIERTAKGRLASAKAYE 365


>gi|301168493|emb|CBW28083.1| holliday junction DNA helicase ruvB [Bacteriovorax marinus SJ]
          Length = 330

 Score =  329 bits (844), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 165/327 (50%), Positives = 227/327 (69%), Gaps = 1/327 (0%)

Query: 2   MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M  E +   N S+E++   + LRP+   E+ GQ +   N++V +E+AK R +A+DHVL  
Sbjct: 1   MSEERVFDSNSSREESRQEIFLRPKDFSEYIGQRKVVQNIEVMVESAKIRKQAMDHVLLS 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKT+LA ++A  LG +    SGP I K GDLAA+LTNLE+ DVLFIDEIHR++I 
Sbjct: 61  GPPGLGKTSLAMIIASALGSHLHVISGPAIEKKGDLAAILTNLEEGDVLFIDEIHRMNIS 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILY AMED++LD+++GEG SAR+++I++S FTLI ATTR GLL++PL+DRF   +  
Sbjct: 121 VEEILYSAMEDYRLDILIGEGASARTMEISISPFTLIGATTRSGLLSSPLRDRFMAHLHF 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           +FYE  +L  IV+  +K   + +  EA   IA  SRGTPRIA R+LRRVRDFA V   ++
Sbjct: 181 DFYEHSELAKIVENNSKKLSIGLEGEAKNHIARCSRGTPRIANRILRRVRDFAVVESKES 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I  E    AL  + ID+ G D++D + L +I   + GGPVGIE + A LSE R  IED+ 
Sbjct: 241 ICEEAVAKALDLMEIDEYGLDRMDRKVLEVIHDYYAGGPVGIEALCATLSEDRTTIEDVY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHL 327
           EP+++++GF+ RTPRGR +   A +HL
Sbjct: 301 EPFLLKEGFLIRTPRGREISEKAKKHL 327


>gi|315923965|ref|ZP_07920193.1| crossover junction ATP-dependent DNA helicase RuvB
           [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315622805|gb|EFV02758.1| crossover junction ATP-dependent DNA helicase RuvB
           [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 353

 Score =  329 bits (844), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 168/330 (50%), Positives = 224/330 (67%), Gaps = 3/330 (0%)

Query: 1   MMDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M DR  +++   ++ D +I S LRP +LEE+ GQ      + +FI AAK R E+LDHVL 
Sbjct: 1   MKDR--IITTEFTEPDIEIESSLRPTSLEEYIGQSRVKKQMGIFIAAAKNRGESLDHVLL 58

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A E+G + R TSGP I K GDLA++LT L+  DVLFIDEIHR+  
Sbjct: 59  YGPPGLGKTTLANIIAGEMGTHIRITSGPAIEKPGDLASILTGLKAGDVLFIDEIHRMQR 118

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEE+LYPAMEDF LD+++G+GP A+SV+++L RFTL+ ATTR GLL+ PL+DRFG+  R
Sbjct: 119 QVEEVLYPAMEDFALDIIIGKGPGAKSVRLDLPRFTLVGATTRAGLLSAPLRDRFGVVQR 178

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L  Y+  DL  IV+R A +  + + +  A E+A RSRGTPRIA RLL+RVRD+AE   + 
Sbjct: 179 LELYDAADLSAIVRRSAGILNIDLDEAGAMELARRSRGTPRIANRLLKRVRDYAETEGSG 238

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I    A  AL    +D  G D +D   L  IA  F GGPVG+ T++A + E    IE++
Sbjct: 239 HIDLATARRALALFEVDDKGLDDIDRLMLRTIAEKFDGGPVGLNTLAAAIGEEPGTIEEV 298

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
            EPY++Q GF+ RTP GR++     +HLGI
Sbjct: 299 YEPYLMQLGFLSRTPSGRIITSAGCRHLGI 328


>gi|153952346|ref|YP_001397506.1| Holliday junction DNA helicase B [Campylobacter jejuni subsp.
           doylei 269.97]
 gi|166231479|sp|A7H1X6|RUVB_CAMJD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|152939792|gb|ABS44533.1| Holliday junction DNA helicase RuvB [Campylobacter jejuni subsp.
           doylei 269.97]
          Length = 335

 Score =  329 bits (844), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 156/309 (50%), Positives = 223/309 (72%), Gaps = 1/309 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP   + + GQ     NL +FI AAK R E LDH+LF GP GLGKTTLA +++ E+  N
Sbjct: 20  LRPSNFDGYIGQESIKKNLNIFITAAKKRNECLDHILFSGPAGLGKTTLANIISYEMDAN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            ++T+ P+I K+GDLAA+LTNL + D+LFIDEIHRLS  +EE+LYPAMED++LD+++G G
Sbjct: 80  IKTTAAPMIEKSGDLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+A+++KI+L +FTLI ATTR G+L+NPL+DRFG+  RL FY+  +L  I+Q+ A     
Sbjct: 140 PAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
              ++AA EIA RSR TPRIA RLL+RVRDFA+V   + IT + A+ AL  L ++++GFD
Sbjct: 200 TCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIITEKRANEALNSLGVNELGFD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +DLRYL ++       P+G+ +I+A LSE  + IED+IEPY++  G+I+RT +GR+   
Sbjct: 260 AMDLRYLELLTAA-KQKPIGLASIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIAST 318

Query: 322 IAWQHLGID 330
            ++  L ++
Sbjct: 319 KSYSALKLN 327


>gi|13399857|pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
 gi|13399858|pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
          Length = 324

 Score =  329 bits (844), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 174/312 (55%), Positives = 227/312 (72%), Gaps = 1/312 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+TL+E+ GQ      L+V++EAAKAR E L+H+L  GPPGLGKTTLA V+A ELGVN
Sbjct: 6   LRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVN 65

Query: 82  FRSTSGPVIAKAGDLAALLTN-LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
            R TSGP I K GDLAA+L N LE+ D+LFIDEIHRLS   EE LYPAMEDF +D+++G+
Sbjct: 66  LRVTSGPAIEKPGDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQ 125

Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
           GP+AR++++ L RFTLI ATTR GL+T PL  RFGI   L +Y  E+L   V R A+L G
Sbjct: 126 GPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLG 185

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGF 260
           + +T+EAA EI  RSRGT R+A RL RRVRDFA+VA  + ITRE A  AL  L +D++G 
Sbjct: 186 VRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAALGLDELGL 245

Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320
           ++ D   L ++   FGGGPVG+ T++  LSE    +E++ EPY+I+QG ++RTPRGR+  
Sbjct: 246 EKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRTPRGRVPT 305

Query: 321 PIAWQHLGIDIP 332
            +A++HLG   P
Sbjct: 306 ELAYRHLGYPPP 317


>gi|86150918|ref|ZP_01069134.1| Holliday junction DNA helicase RuvB [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|315124802|ref|YP_004066806.1| Holliday junction DNA helicase RuvB [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|85842088|gb|EAQ59334.1| Holliday junction DNA helicase RuvB [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|315018524|gb|ADT66617.1| Holliday junction DNA helicase RuvB [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
          Length = 335

 Score =  329 bits (844), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 156/309 (50%), Positives = 223/309 (72%), Gaps = 1/309 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP   + + GQ     NL +FI AAK R E LDH+LF GP GLGKTTLA +++ E+  N
Sbjct: 20  LRPSNFDGYIGQESIKKNLNIFITAAKKRNECLDHILFSGPAGLGKTTLANIISYEMDAN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            ++T+ P+I K+GDLAA+LTNL + D+LFIDEIHRLS  +EE+LYPAMED++LD+++G G
Sbjct: 80  IKTTAAPMIEKSGDLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+A+++KI+L +FTLI ATTR G+L+NPL+DRFG+  RL FY+  +L  I+Q+ A     
Sbjct: 140 PAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
              ++AA EIA RSR TPRIA RLL+RVRDFA+V   + IT + A+ AL  L ++++GFD
Sbjct: 200 TCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIITEKRANEALNSLGVNELGFD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +DLRYL ++       P+G+ +I+A LSE  + IED+IEPY++  G+I+RT +GR+   
Sbjct: 260 AMDLRYLELLTAA-KQKPIGLASIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIASA 318

Query: 322 IAWQHLGID 330
            ++  L ++
Sbjct: 319 KSYSALKLN 327


>gi|227542216|ref|ZP_03972265.1| Holliday junction DNA helicase B [Corynebacterium glucuronolyticum
           ATCC 51866]
 gi|227182045|gb|EEI63017.1| Holliday junction DNA helicase B [Corynebacterium glucuronolyticum
           ATCC 51866]
          Length = 365

 Score =  329 bits (843), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 162/326 (49%), Positives = 225/326 (69%), Gaps = 1/326 (0%)

Query: 8   LSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           +S    + D D+ + LRP++++EF GQ +    L++ +E AK R  A DHVL  GPPGLG
Sbjct: 33  VSPEKQETDHDLEVSLRPKSIDEFIGQDKVRKQLRLVLEGAKKRGSAPDHVLLSGPPGLG 92

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTT+A ++A+ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++   EE+LY
Sbjct: 93  KTTMAMIIAQELGTSLRMTSGPALERAGDLAAMLSNLMEGDVLFIDEIHRIARPAEEMLY 152

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            AMEDF++D++VG+GP A S+ + L+ FTL+ ATTR G+LT PL+DRFG    + FY  +
Sbjct: 153 MAMEDFRIDVIVGKGPGATSIPLELAPFTLVGATTRSGMLTGPLRDRFGFTAHMEFYSPK 212

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           DL ++V R AK+ G+ +  EAA EIA RSRGTPRIA RLLRRVRD+AEV     I  + A
Sbjct: 213 DLTSVVLRAAKILGVNIDKEAAAEIAGRSRGTPRIANRLLRRVRDYAEVHSDGHIDVDAA 272

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
             AL+   +D+ G D+LD   L  + +  GGGPVG+ T++  + E    +E++ EPY+++
Sbjct: 273 KTALVVFDVDEKGLDRLDRAVLNALIKGHGGGPVGVSTLAIAVGEEPSTVEEVCEPYLVR 332

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIP 332
            G I RT RGR+    AWQHLG+  P
Sbjct: 333 AGLISRTGRGRVATAAAWQHLGLTPP 358


>gi|42527419|ref|NP_972517.1| Holliday junction DNA helicase RuvB [Treponema denticola ATCC
           35405]
 gi|47606091|sp|P61538|RUVB_TREDE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|41818004|gb|AAS12428.1| Holliday junction DNA helicase RuvB [Treponema denticola ATCC
           35405]
          Length = 343

 Score =  329 bits (843), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 158/311 (50%), Positives = 217/311 (69%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPR+L +F GQ +A  NL VFI+AA+ R E+LDH+  +GPPGLGKTTLAQ+ A ELGV+
Sbjct: 22  LRPRSLVDFQGQTKAKENLSVFIKAARERGESLDHLFLIGPPGLGKTTLAQITANELGVD 81

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           F+ T  P + K  DLA +LT L +R V FIDEIHRL   +EE+LY AMED++LD ++G+G
Sbjct: 82  FKVTGAPALDKPKDLAGILTTLTERSVFFIDEIHRLKPAIEEMLYIAMEDYELDWIIGQG 141

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P AR+V+I +  FTL+ ATTR G++++PL  RFGI  R  FY  E+L +I+ R A +  +
Sbjct: 142 PGARTVRIPIPPFTLVGATTRAGMVSSPLISRFGIVQRFEFYSHEELASIISRSASILEI 201

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  +AA  +A  SRGTPR+A RLLRR+RDFA+VA   +I      A L +L ID +G +
Sbjct: 202 EIEKKAAIALARCSRGTPRVANRLLRRMRDFAQVAGKSSIDEMTVAAGLKQLNIDGLGLE 261

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             D + L  I  N+ GGPVG ET++  + E +D +ED  EPY+IQ G +QRTPRGR++  
Sbjct: 262 TYDRQILRSIIENYSGGPVGAETLAISIGESQDTLEDYYEPYLIQSGLLQRTPRGRMVTL 321

Query: 322 IAWQHLGIDIP 332
            A++HLG++ P
Sbjct: 322 KAYEHLGLNPP 332


>gi|15825806|pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
          Length = 334

 Score =  329 bits (843), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 160/318 (50%), Positives = 220/318 (69%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           D+ +  LRP++L+EF GQ      L + +EAAK R E LDHVL  GPPGLG+TTLA ++A
Sbjct: 13  DSGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGRTTLAHIIA 72

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
            EL  N   TSGPV+ K GD+AA+LT+LE  DVLFIDEIHRL+  VEE+LY A+EDFQ+D
Sbjct: 73  SELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQID 132

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           +M+G+GPSA+S++I++  FTL+ ATTR GLL++PL+ RFGI + L+FY +++LK I++R 
Sbjct: 133 IMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRA 192

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255
           A L  + + D AA  IA RSRGTPRIA RL +RVRD   V  A  I  +I    +  L I
Sbjct: 193 ASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLNI 252

Query: 256 DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR 315
           D  G D+ D + L  I   + GGPVG+  ++A L    D + ++ EPY++Q GF+ RTPR
Sbjct: 253 DDEGLDEFDRKILKTIIEIYRGGPVGLNALAASLGVEADTLSEVYEPYLLQAGFLARTPR 312

Query: 316 GRLLMPIAWQHLGIDIPH 333
           GR++   A++HL  ++P 
Sbjct: 313 GRIVTEKAYKHLKYEVPE 330


>gi|227513118|ref|ZP_03943167.1| Holliday junction DNA helicase B [Lactobacillus buchneri ATCC
           11577]
 gi|227524333|ref|ZP_03954382.1| Holliday junction DNA helicase B [Lactobacillus hilgardii ATCC
           8290]
 gi|227083693|gb|EEI19005.1| Holliday junction DNA helicase B [Lactobacillus buchneri ATCC
           11577]
 gi|227088564|gb|EEI23876.1| Holliday junction DNA helicase B [Lactobacillus hilgardii ATCC
           8290]
          Length = 339

 Score =  329 bits (843), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 163/318 (51%), Positives = 222/318 (69%), Gaps = 1/318 (0%)

Query: 11  NVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           NV+ ++ +I   LRP+TL ++ GQ +  + LKV+I+AAK R E+LDHVL  GPPGLGKTT
Sbjct: 12  NVNGDENNIEKTLRPQTLGDYIGQTDVKNELKVYIKAAKQREESLDHVLLYGPPGLGKTT 71

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           LA V+A E+GVN R+T+GP I K GDL +LL  L   DVLFIDEIHRL  +VEE+LY AM
Sbjct: 72  LAMVIANEMGVNIRTTTGPAIDKPGDLLSLLNELNPGDVLFIDEIHRLPKVVEEMLYSAM 131

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           EDF +D++VG+G  A  V   L  FTLI ATT+ G+L+ PL+DRFGI   +N+YE+ DL+
Sbjct: 132 EDFFVDIIVGQGSGAHPVHFPLPPFTLIGATTQAGMLSAPLRDRFGIVEHMNYYEVSDLE 191

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            IVQR A +  + +    A EIA+RSRGTPR+A RLL+R+RDFA+V     I  EI   A
Sbjct: 192 EIVQRTAGIFQIPILKSGAHEIALRSRGTPRVANRLLKRIRDFAQVFDKDNIDLEIVRYA 251

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           L +L +D +G D  D++ L  +   + GGPVG++T++A + E  D I ++ EPY++Q G 
Sbjct: 252 LEKLKVDDLGLDATDIKLLRTMIDYYDGGPVGLKTLAANIGEETDTIAEMYEPYLLQIGL 311

Query: 310 IQRTPRGRLLMPIAWQHL 327
           I+RT RGR + P  ++HL
Sbjct: 312 IKRTARGRRVTPKGYEHL 329


>gi|296273983|ref|YP_003656614.1| Holliday junction DNA helicase RuvB [Arcobacter nitrofigilis DSM
           7299]
 gi|296098157|gb|ADG94107.1| Holliday junction DNA helicase RuvB [Arcobacter nitrofigilis DSM
           7299]
          Length = 338

 Score =  329 bits (843), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 169/314 (53%), Positives = 231/314 (73%), Gaps = 9/314 (2%)

Query: 11  NVSQ-----EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           NV Q     E ++ISL RP + +++ GQ +   NL+VFI+A++ R EALDH+LF GPPGL
Sbjct: 7   NVEQISFEDEKSEISL-RPSSWDDYIGQEKIKKNLRVFIDASRKRGEALDHILFYGPPGL 65

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTL+ +++ E+  N + T+GP+I K+GDLAA+LTNLE+ D+LFIDEIHRLS  VEEIL
Sbjct: 66  GKTTLSYLISNEMNSNIKITAGPMIEKSGDLAAILTNLEEGDILFIDEIHRLSPAVEEIL 125

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           YPAMED++LD+++G GP+A++VKI+L RFTLI ATTR G+L+NPL++RFG+  R+ FY  
Sbjct: 126 YPAMEDYRLDIIIGSGPAAQTVKIDLPRFTLIGATTRAGMLSNPLRERFGMHFRMQFYTH 185

Query: 186 EDLKTIVQ-RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            +L  I+Q  G KL      D A+ EIA RSRGTPRIA RLLRRVRDFAEV + + I  +
Sbjct: 186 PELSKIIQIAGTKLDKECEKD-ASLEIARRSRGTPRIALRLLRRVRDFAEVENEQIIKLK 244

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
             + AL  L +++ GFD++D+  L ++  N  G P+G+ TI+A LSE    IED IEPY+
Sbjct: 245 RCEYALNELGVNETGFDEMDINLLELLVSN-RGRPMGLSTIAAALSEDEGTIEDAIEPYL 303

Query: 305 IQQGFIQRTPRGRL 318
           +  G+I+RT RGR+
Sbjct: 304 LANGYIERTARGRV 317


>gi|326693301|ref|ZP_08230306.1| Holliday junction DNA helicase RuvB [Leuconostoc argentinum KCTC
           3773]
          Length = 355

 Score =  329 bits (843), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 163/322 (50%), Positives = 222/322 (68%), Gaps = 1/322 (0%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           N +++  ++SL RP+ L E+ GQ      L V+I AAK R EALDHVL  GPPGLGKTTL
Sbjct: 32  NQAEQHDELSL-RPQFLREYIGQTALKEELSVYIAAAKQRQEALDHVLLFGPPGLGKTTL 90

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           A ++A E+GV+ ++TSGP I K GDL ALL  LE  D+LFIDEIHRL   +EEI+Y AME
Sbjct: 91  AMIIANEMGVHIKTTSGPAIEKPGDLVALLNELEPGDILFIDEIHRLPTNIEEIMYSAME 150

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           D+ +D+MVG+GP+AR+V   L  FTLI ATTR G+L+ PL+DRFGI   + +Y   +L+ 
Sbjct: 151 DYFVDIMVGQGPTARAVHFPLPPFTLIGATTRPGMLSKPLRDRFGIINAMVYYTPAELQE 210

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           IV R A +    +    A E+A+RSRGTPRIA RLL+RVRDFA+V     I + I D AL
Sbjct: 211 IVVRSADIFQAPIKPAGAYEVALRSRGTPRIANRLLKRVRDFAQVQGLDAIDQGIVDVAL 270

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
            +L +D  G D+ D ++L  +   + GGPVG+ TI+A + E  + +E ++EPY++Q GF+
Sbjct: 271 DKLRVDNRGLDETDHKFLGTMVAYYNGGPVGLNTIAANIGEEAETLESMVEPYLLQIGFL 330

Query: 311 QRTPRGRLLMPIAWQHLGIDIP 332
           QRTPRGR++   A++HL +  P
Sbjct: 331 QRTPRGRVVTEAAYKHLNLPYP 352


>gi|300858593|ref|YP_003783576.1| holliday junction resolvasome helicase subunit B [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686047|gb|ADK28969.1| Holliday junction resolvasome helicase subunit B [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302206305|gb|ADL10647.1| Holliday junction ATP-dependent DNA helicase ruvB [Corynebacterium
           pseudotuberculosis C231]
 gi|302330862|gb|ADL21056.1| Holliday junction ATP-dependent DNA helicase ruvB [Corynebacterium
           pseudotuberculosis 1002]
 gi|308276547|gb|ADO26446.1| Holliday junction ATP-dependent DNA helicase ruvB [Corynebacterium
           pseudotuberculosis I19]
          Length = 365

 Score =  329 bits (843), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 164/325 (50%), Positives = 222/325 (68%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           +R  + E+   + LRPR++EEF GQ +    L + +  AK R    DHVL  GPPGLGKT
Sbjct: 31  ARQQAGENDAETTLRPRSIEEFIGQPKVRGQLNLVLTGAKKRGVTPDHVLLSGPPGLGKT 90

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           T+A ++A ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++   EE+LY A
Sbjct: 91  TMAMIIAYELGTSLRMTSGPALERAGDLAAMLSNLMEGDVLFIDEIHRMARPAEEMLYMA 150

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           MEDF++D++VG+GP A S+ + L+ FTL+ ATTR G+LT PL+DRFG   ++ FYE  DL
Sbjct: 151 MEDFRIDVIVGKGPGATSIPLELAPFTLVGATTRSGMLTGPLRDRFGFTAQMEFYENSDL 210

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             +V R AK+ G+ + D AA EIA RSRGTPRIA RLLRRVRDFAEV     I  E A +
Sbjct: 211 TKVVLRAAKILGVTIDDAAAIEIASRSRGTPRIANRLLRRVRDFAEVHSDGHIDVEAARS 270

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL+   +D+ G D+LDL  L  + +  GGGPVG+ T++  + E    +E++ EPY+++ G
Sbjct: 271 ALVVFDVDEKGLDRLDLAVLEALIKGHGGGPVGVNTLAIAVGEEPSTVEEVCEPYLVRAG 330

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIPH 333
            I RT RGR+    AW+HLG+  P 
Sbjct: 331 MITRTGRGRVATAAAWRHLGLVPPE 355


>gi|120403561|ref|YP_953390.1| Holliday junction DNA helicase RuvB [Mycobacterium vanbaalenii
           PYR-1]
 gi|171769147|sp|A1T884|RUVB_MYCVP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|119956379|gb|ABM13384.1| Holliday junction DNA helicase subunit RuvB [Mycobacterium
           vanbaalenii PYR-1]
          Length = 355

 Score =  328 bits (842), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 165/330 (50%), Positives = 227/330 (68%), Gaps = 1/330 (0%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           +RE   +  V + D D SL RPR+L EF GQ      L++ +E AK R    DH+L  GP
Sbjct: 14  EREMSAALTVGEGDIDASL-RPRSLGEFIGQPRVREQLQLVLEGAKNRGGTPDHILLSGP 72

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKT+LA ++A ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++   E
Sbjct: 73  PGLGKTSLAMIIAAELGSSLRVTSGPALERAGDLAAMLSNLVEHDVLFIDEIHRIARPAE 132

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LY AMEDF++D++VG+GP A S+ + ++ FTL+ ATTR G LT PL+DRFG    ++F
Sbjct: 133 EMLYLAMEDFRVDVVVGKGPGATSIPLEVAPFTLVGATTRSGALTGPLRDRFGFTAHMDF 192

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           YE  +L+ ++ R A + G+ +  EA  EIA RSRGTPRIA RLLRRVRD+AEV     IT
Sbjct: 193 YEPSELERVLARSAGILGIELGAEAGAEIARRSRGTPRIANRLLRRVRDYAEVRADGVIT 252

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           R+IA  AL    +D++G D+LD   L+ + R+FGGGPVG+ T++  + E    +E++ EP
Sbjct: 253 RDIAKYALEVYDVDELGLDRLDRAVLSALTRSFGGGPVGVSTLAVAVGEEATTVEEVCEP 312

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++++ G I RTPRGR+    AW HLG+  P
Sbjct: 313 FLVRAGMIARTPRGRVATAQAWTHLGMKPP 342


>gi|227488787|ref|ZP_03919103.1| Holliday junction DNA helicase B [Corynebacterium glucuronolyticum
           ATCC 51867]
 gi|227091209|gb|EEI26521.1| Holliday junction DNA helicase B [Corynebacterium glucuronolyticum
           ATCC 51867]
          Length = 365

 Score =  328 bits (842), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 162/326 (49%), Positives = 224/326 (68%), Gaps = 1/326 (0%)

Query: 8   LSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           +S    + D D+ + LRP++++EF GQ +    L++ +E AK R  A DHVL  GPPGLG
Sbjct: 33  VSPEKQETDHDLEVSLRPKSIDEFIGQDKVRKQLRLVLEGAKKRGSAPDHVLLSGPPGLG 92

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTT+A ++A+ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++   EE+LY
Sbjct: 93  KTTMAMIIAQELGTSLRMTSGPALERAGDLAAMLSNLMEGDVLFIDEIHRIARPAEEMLY 152

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            AMEDF++D++VG+GP A S+ + L+ FTL+ ATTR G+LT PL+DRFG    + FY  +
Sbjct: 153 MAMEDFRIDVIVGKGPGATSIPLELAPFTLVGATTRSGMLTGPLRDRFGFTAHMEFYSPK 212

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           DL  +V R AK+ G+ +  EAA EIA RSRGTPRIA RLLRRVRD+AEV     I  + A
Sbjct: 213 DLTAVVLRAAKILGVNIDKEAAAEIAGRSRGTPRIANRLLRRVRDYAEVHSDGHIDVDAA 272

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
             AL+   +D+ G D+LD   L  + +  GGGPVG+ T++  + E    +E++ EPY+++
Sbjct: 273 KTALVVFDVDEKGLDRLDRAVLNALIKGHGGGPVGVSTLAIAVGEEPSTVEEVCEPYLVR 332

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIP 332
            G I RT RGR+    AWQHLG+  P
Sbjct: 333 AGLISRTGRGRVATAAAWQHLGLTPP 358


>gi|218248327|ref|YP_002373698.1| Holliday junction DNA helicase RuvB [Cyanothece sp. PCC 8801]
 gi|257060346|ref|YP_003138234.1| Holliday junction DNA helicase RuvB [Cyanothece sp. PCC 8802]
 gi|226725456|sp|B7K1K0|RUVB_CYAP8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|218168805|gb|ACK67542.1| Holliday junction DNA helicase RuvB [Cyanothece sp. PCC 8801]
 gi|256590512|gb|ACV01399.1| Holliday junction DNA helicase RuvB [Cyanothece sp. PCC 8802]
          Length = 360

 Score =  328 bits (842), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 163/325 (50%), Positives = 230/325 (70%), Gaps = 2/325 (0%)

Query: 7   LLSRNVSQEDADIS--LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           LLS   + ++ + S   +RP  LE++ GQ +  S L + +EAAK R ++LDH+L  GPPG
Sbjct: 27  LLSPTPTHQEKETSEEKIRPHRLEDYIGQKDLKSILAIAMEAAKTRQDSLDHLLLYGPPG 86

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTT++ ++A E+GVN + T+ P + +  D+  LL NL+  D+LFIDEIHRL+ + EE+
Sbjct: 87  LGKTTISLILASEMGVNCKITAAPALERPRDITGLLINLKPGDILFIDEIHRLNRLTEEL 146

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPAMED++LD+ +G+G +AR+  I+L +FTLI ATT+VG LT+PL+DRFG+  RL FYE
Sbjct: 147 LYPAMEDYRLDITIGKGKAARTQSIHLPKFTLIGATTKVGALTSPLRDRFGLIQRLRFYE 206

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +++L  IV R A++   AVT+E A EIA RSRGTPRIA RLLRRVRD+ +V +  TI +E
Sbjct: 207 VDELTLIVLRTAQILDTAVTEEGATEIARRSRGTPRIANRLLRRVRDYMQVKNGTTIDQE 266

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +A  AL    +DK G D +D   L  +   F GGPVG+E I+A   E    IE++ EPY+
Sbjct: 267 LASEALDIYQVDKQGLDWIDRLILETMINQFKGGPVGLEAIAASTGEDAKTIEEVYEPYL 326

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGI 329
           +Q GF+ RTPRGR++  +A+QHLG+
Sbjct: 327 LQIGFLNRTPRGRVVSAVAYQHLGL 351


>gi|255323346|ref|ZP_05364480.1| holliday junction DNA helicase RuvB [Campylobacter showae RM3277]
 gi|255299638|gb|EET78921.1| holliday junction DNA helicase RuvB [Campylobacter showae RM3277]
          Length = 339

 Score =  328 bits (841), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 167/326 (51%), Positives = 233/326 (71%), Gaps = 6/326 (1%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MDR   + +   + D ++SL RP   E++ GQ +   NL VFI+AAK R E LDHVLF G
Sbjct: 1   MDRIVEIEKISFENDFEVSL-RPTRFEDYIGQGKIKQNLGVFIKAAKKRGECLDHVLFYG 59

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+GV+ + T+ P+I K+GDLAA+LTNL++ DVLFIDEIHRLS  +
Sbjct: 60  PPGLGKTTLAHIIANEMGVSIKMTAAPMIEKSGDLAAVLTNLQEGDVLFIDEIHRLSPAI 119

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMEDF+LD+++G GP+A+++KI+L +FTLI ATTR G+++ PL+DRFG+  RL 
Sbjct: 120 EEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMISAPLRDRFGMDFRLQ 179

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY  E+L  IVQ  +   G      AA E+A RSR TPRIA RLL+R+RDFAEV     I
Sbjct: 180 FYTREELARIVQIASVKLGKECEKAAALEVAARSRATPRIALRLLKRIRDFAEVNDEAII 239

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMI--ARNFGGGPVGIETISAGLSEPRDAIEDL 299
           ++  A  AL  L ++ +GFD++D++YL ++  A+     P+G+ TI+A LSE    +ED+
Sbjct: 240 SQPRAKEALDALGVNDIGFDEMDIKYLEILLAAKR---RPMGLSTIAAALSEDEGTVEDV 296

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQ 325
           IEPY++  G+I+RT +GRL    A++
Sbjct: 297 IEPYLLANGYIERTAKGRLASAKAYE 322


>gi|15825808|pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
          Length = 334

 Score =  328 bits (841), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 160/318 (50%), Positives = 219/318 (68%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           D+ +  LRP++L+EF GQ      L + +EAAK R E LDHVL  GPPGLGKTTLA ++A
Sbjct: 13  DSGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIA 72

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
            EL  N   TSGPV+ K GD+AA+LT+LE  DVLFIDEIHRL+  VEE+LY A+EDFQ+D
Sbjct: 73  SELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQID 132

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           +M+G+GPSA+S++I++  FTL+ AT R GLL++PL+ RFGI + L+FY +++LK I++R 
Sbjct: 133 IMIGKGPSAKSIRIDIQPFTLVGATVRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRA 192

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255
           A L  + + D AA  IA RSRGTPRIA RL +RVRD   V  A  I  +I    +  L I
Sbjct: 193 ASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLNI 252

Query: 256 DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR 315
           D  G D+ D + L  I   + GGPVG+  ++A L    D + ++ EPY++Q GF+ RTPR
Sbjct: 253 DDEGLDEFDRKILKTIIEIYRGGPVGLNALAASLGVEADTLSEVYEPYLLQAGFLARTPR 312

Query: 316 GRLLMPIAWQHLGIDIPH 333
           GR++   A++HL  ++P 
Sbjct: 313 GRIVTEKAYKHLKYEVPE 330


>gi|227529694|ref|ZP_03959743.1| Holliday junction DNA helicase B [Lactobacillus vaginalis ATCC
           49540]
 gi|227350360|gb|EEJ40651.1| Holliday junction DNA helicase B [Lactobacillus vaginalis ATCC
           49540]
          Length = 338

 Score =  328 bits (841), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 160/313 (51%), Positives = 218/313 (69%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L ++ GQ +    L ++I+AAK R EALDHVL  GPPGLGKTTLA V+  ELGVN
Sbjct: 26  LRPQNLADYIGQTKIKHGLNIYIKAAKEREEALDHVLLYGPPGLGKTTLAMVITNELGVN 85

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            ++TSGP I K GDL ALL  L+  DVLFIDEIHRL  +VEE+LY AMED+ +D+++GEG
Sbjct: 86  IKTTSGPAIEKPGDLVALLNELKPGDVLFIDEIHRLPKVVEEMLYSAMEDYYIDIVIGEG 145

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+A  V   L  FTLI ATTR G+L+ PL+DRFGI   +++Y  ++L  I+ R A +   
Sbjct: 146 PTAHPVHFPLPPFTLIGATTRAGMLSAPLRDRFGIVEHMSYYNQDELTRIIFRSAGIFQT 205

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + DE A E+A+RSRGTPRIA RLL+RVRDFA+VA   +I       AL  L ID  G D
Sbjct: 206 KIEDEGAHELALRSRGTPRIANRLLKRVRDFAQVAGKGSIDLASVRQALKLLQIDDQGLD 265

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           ++D + L  +   + GGPVG++TI+A + E +  IE++ EPY++Q G++ RT RGR++  
Sbjct: 266 EIDRKLLLTMINYYHGGPVGLKTIAANIGEEKSTIEEMYEPYLLQIGYLTRTARGRMVTE 325

Query: 322 IAWQHLGIDIPHR 334
            A++HLG++ P +
Sbjct: 326 AAYKHLGLEYPTK 338


>gi|116333840|ref|YP_795367.1| Holliday junction DNA helicase B [Lactobacillus brevis ATCC 367]
 gi|122269473|sp|Q03R36|RUVB_LACBA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|116099187|gb|ABJ64336.1| Holliday junction DNA helicase subunit RuvB [Lactobacillus brevis
           ATCC 367]
          Length = 338

 Score =  328 bits (841), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 170/335 (50%), Positives = 224/335 (66%), Gaps = 3/335 (0%)

Query: 1   MMDREGLLSRNVS--QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M+D E ++S   +   ED+    LRP+ L ++ GQ      L V+I+AAK R E+LDHVL
Sbjct: 1   MVDDERVVSPETADDHEDSVEKSLRPQVLAQYIGQEPIKHELSVYIQAAKQREESLDHVL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA V+A E+GV  R+TSGP I K GDL ALL  L+  D+LFIDEIHRL 
Sbjct: 61  LYGPPGLGKTTLAMVIANEMGVQIRTTSGPAIEKPGDLVALLNELQPGDILFIDEIHRLP 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            IVEE+LY AMEDF +D++VG+GP+A  V   L  FTLI ATTR GLL+ PL+DRFGI  
Sbjct: 121 KIVEEMLYSAMEDFYIDIVVGQGPTAHPVHFPLPPFTLIGATTRAGLLSAPLRDRFGIVE 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA-H 237
            + +YE  DL+ IV R A +   A+  E A EIA+RSRGTPRIA RLL+R+RDFAEVA  
Sbjct: 181 HMAYYETTDLQEIVLRSADIFHTAIATEGAHEIALRSRGTPRIANRLLKRIRDFAEVAPD 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
              I   I D AL  L +D  G D  D++ L  +   + GGPVG+ T++A + E  + + 
Sbjct: 241 HDQIDLAIVDHALDLLRVDSAGLDATDIKLLETMIDYYNGGPVGLNTLAANIGEETETVA 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
            + EPY++Q+G+++RT RGR++    +QHLG  +P
Sbjct: 301 AMYEPYLLQRGYLKRTARGRVVTATGYQHLGRTMP 335


>gi|261417027|ref|YP_003250710.1| Holliday junction DNA helicase RuvB [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261373483|gb|ACX76228.1| Holliday junction DNA helicase RuvB [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302325461|gb|ADL24662.1| Holliday junction DNA helicase RuvB [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 345

 Score =  328 bits (841), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 164/311 (52%), Positives = 216/311 (69%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP +L EFTGQ +   +L + IEAAK R +ALDH LF GPPGLGKTTL+ ++A+E+GVN
Sbjct: 23  LRPPSLSEFTGQDDIKESLSIAIEAAKQRGDALDHCLFAGPPGLGKTTLSSIIAKEMGVN 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
              TSGPV+ KA DLA LLT+L++ D+LFIDEIHRL+ +VEE LYPAMEDF+LD+M+  G
Sbjct: 83  IHITSGPVLEKASDLAGLLTSLQENDILFIDEIHRLNRVVEEYLYPAMEDFRLDIMLDSG 142

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARSV + L  FTL+ ATTR GLLT PL+DRFG+  RL  Y  +D+  I+ R A++ G+
Sbjct: 143 PAARSVNLPLKHFTLVGATTRSGLLTGPLRDRFGLQYRLELYNEKDIVKILMRSARILGV 202

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +++EAA  +  R RGTPR+A R+LRR RD A+V     I    A   L  L ID  G D
Sbjct: 203 ELSEEAAKILGGRCRGTPRVANRVLRRCRDVAQVRGTGVIDERAALKTLEMLGIDSEGLD 262

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             D + L M+   F GGPVG+ TISA + E  D +E++ EPY++Q+G I RTPRGR+   
Sbjct: 263 PTDRKILAMMIDKFNGGPVGLGTISAAMGEEPDTLEEVYEPYLLQKGLISRTPRGRIATL 322

Query: 322 IAWQHLGIDIP 332
            A++ L   +P
Sbjct: 323 NAYRMLHKPLP 333


>gi|254822006|ref|ZP_05227007.1| Holliday junction DNA helicase RuvB [Mycobacterium intracellulare
           ATCC 13950]
          Length = 351

 Score =  328 bits (841), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 162/320 (50%), Positives = 225/320 (70%), Gaps = 1/320 (0%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
            + D D+SL RPR+L EF GQ      L++ IE AK R    DH+L  GPPGLGKT+LA 
Sbjct: 20  GEGDIDVSL-RPRSLREFIGQPRVREQLQLVIEGAKNRGGTPDHILLSGPPGLGKTSLAM 78

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++A ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++   EE+LY AMEDF
Sbjct: 79  IIAAELGSSLRLTSGPALERAGDLAAMLSNLVEHDVLFIDEIHRIARPAEEMLYLAMEDF 138

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           ++D++VG+GP A S+ + ++ FTL+ ATTR G LT PL+DRFG    ++FYE  +L+ ++
Sbjct: 139 RVDVVVGKGPGATSIPLEVAPFTLVGATTRSGALTGPLRDRFGFTAHMDFYEPAELERVL 198

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R A + G+ +  +AA EIA RSRGTPRIA RLLRRVRDFAEV     ITR++A +AL  
Sbjct: 199 ARSAGILGIELGGDAAEEIARRSRGTPRIANRLLRRVRDFAEVRADGVITRDVAKSALAV 258

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
             +D++G D+LD   L+ + R+FGGGPVG+ T++  + E    +E++ EP++++ G + R
Sbjct: 259 YDVDELGLDRLDRAVLSALTRSFGGGPVGVSTLAVAVGEEATTVEEVCEPFLVRAGMVAR 318

Query: 313 TPRGRLLMPIAWQHLGIDIP 332
           TPRGR+    AW HLG+  P
Sbjct: 319 TPRGRVATAQAWTHLGMAPP 338


>gi|317013831|gb|ADU81267.1| Holliday junction DNA helicase RuvB [Helicobacter pylori
           Gambia94/24]
          Length = 336

 Score =  328 bits (841), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 158/311 (50%), Positives = 227/311 (72%), Gaps = 3/311 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP   E+F GQ +  SNL++ I AAK R E+LDH+LF GPPGLGKT+++ ++A+E+  N
Sbjct: 21  LRPNLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + T+ P+I K+GDLAA+LTNL+ +D+LFIDEIHRLS  +EE+LYPAMEDF+LD+++G G
Sbjct: 81  IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSG 140

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+A+++KI+L  FTLI ATTR G+L+NPL+DRFG+  R+ FY   +L  I+++ A     
Sbjct: 141 PAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQFYSPSELSLIIKKAAAKLNQ 200

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + +E+A EIA RSRGTPRIA RLL+RVRDFA V ++  +   I   AL  L ++++GFD
Sbjct: 201 DIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMDLNITLHALNELGVNELGFD 260

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           + DL YL+++A N  G PVG+ TI+A + E    IED+IEP+++  G+++RT +GR+  P
Sbjct: 261 EADLAYLSLLA-NAQGKPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATP 319

Query: 322 IAWQHLGIDIP 332
               H  + IP
Sbjct: 320 --KTHALLKIP 328


>gi|291519344|emb|CBK74565.1| Holliday junction DNA helicase, RuvB subunit [Butyrivibrio
           fibrisolvens 16/4]
          Length = 337

 Score =  328 bits (841), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 163/333 (48%), Positives = 224/333 (67%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M+  + + S   S ED  + + LRP++ + + GQ +   N+K++IEAAK R +ALDHVL 
Sbjct: 1   MLSNKQITSTIASHEDLVNDNALRPKSFDGYIGQTKVKENMKIYIEAAKNRGDALDHVLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+G N + TSGP I   G++ A+L  L+D D+LFIDEIHRLS 
Sbjct: 61  YGPPGLGKTTLAGIVAGEMGSNIKVTSGPAITIPGEIVAVLMTLKDGDILFIDEIHRLSK 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEE LY AMEDF +D+++G+  +ARS+   L RFTLI ATTR GLL+ PL+DRFGI   
Sbjct: 121 PVEETLYSAMEDFAVDIVMGKDTTARSIHTKLPRFTLIGATTRPGLLSAPLRDRFGIIGH 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           +++Y  E+L TIV   A      +  E A +IA+RSRGTPR+A R L+RVRD+AEV +  
Sbjct: 181 MDYYTPEELSTIVTASAAKLNAPIDYEGAYQIALRSRGTPRLANRYLKRVRDYAEVRYDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT+E+A A L  L +D +G D  D   L  I   FGGGPVG++ ++A + E    IED+
Sbjct: 241 AITKEVASATLDSLEVDTLGLDYNDRSILLAIIERFGGGPVGLDNLAATVGEDSGTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
            EPY++Q G I RTP+GR+   +A++H  + +P
Sbjct: 301 YEPYLLQHGLIIRTPKGRVATKLAYEHFNMPVP 333


>gi|193212227|ref|YP_001998180.1| Holliday junction DNA helicase RuvB [Chlorobaculum parvum NCIB
           8327]
 gi|238692619|sp|B3QM27|RUVB_CHLP8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|193085704|gb|ACF10980.1| Holliday junction DNA helicase RuvB [Chlorobaculum parvum NCIB
           8327]
          Length = 342

 Score =  328 bits (840), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 160/306 (52%), Positives = 222/306 (72%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+++ +F GQ +   NLKVFI AA+ R +ALDHVL  GPPGLGKTTLA ++A E+G  
Sbjct: 21  IRPQSMSDFAGQKKLTDNLKVFITAARKRGDALDHVLLSGPPGLGKTTLAHIIAAEMGGG 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGP+I KAG+LA LLT+L+  D+LFIDEIHRL+  VEE LY AMED+++D+++  G
Sbjct: 81  IKITSGPLIDKAGNLAGLLTSLKKGDILFIDEIHRLAPAVEEYLYSAMEDYRIDILLDSG 140

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P++R+V++ L  FTL+ ATTR GLLT+PL+ RFGI  RL++Y  E L++I+ R A +  +
Sbjct: 141 PASRAVQLKLEPFTLVGATTRSGLLTSPLRARFGINSRLDYYSPELLQSIIVRAAGILNI 200

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            V ++AA EIA RSRGTPRIA RLLRR RDFA+VA+  +I+  +A   L  L ID+ G D
Sbjct: 201 GVDEDAAMEIARRSRGTPRIANRLLRRARDFAQVANEASISLAVARRTLESLEIDEGGLD 260

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  I R F GGPVG+ +++  + E +D IE++ EPY+IQ G++ RTPRGR+   
Sbjct: 261 DMDKKILEAIVRKFNGGPVGVASLAVSVGEEQDTIEEVYEPYLIQVGYLARTPRGRVATR 320

Query: 322 IAWQHL 327
           +A Q  
Sbjct: 321 LAMQRF 326


>gi|56750714|ref|YP_171415.1| Holliday junction DNA helicase RuvB [Synechococcus elongatus PCC
           6301]
 gi|81820695|sp|Q5N474|RUVB_SYNP6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|56685673|dbj|BAD78895.1| holliday junction DNA helicase RuvB [Synechococcus elongatus PCC
           6301]
          Length = 375

 Score =  328 bits (840), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 165/312 (52%), Positives = 213/312 (68%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L ++ GQ E    L + I AAK+R E+LDH+L  GPPGLGKTT+A V+A E+GV 
Sbjct: 48  IRPQRLADYIGQPELKDVLGIAIAAAKSRQESLDHLLLYGPPGLGKTTMALVLATEMGVQ 107

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R T+ P + +  D+  LL NL+  DVLFIDEIHRL  + EEILYPAMEDF+LD+ +G+G
Sbjct: 108 CRITTAPALERPRDIVGLLVNLQPGDVLFIDEIHRLPKVTEEILYPAMEDFRLDITIGKG 167

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            SAR+  I L  FTL+ ATT++G LT+PL+DRFG+  RL FYE+E L  IVQR A+L   
Sbjct: 168 QSARTPSITLHPFTLVGATTQIGALTSPLRDRFGLVQRLRFYEVEALTDIVQRTARLLNT 227

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +    A EIA RSRGTPRIA RLLRRVRD+A V     IT  IA  AL    +D  G D
Sbjct: 228 PLDQAGAEEIAKRSRGTPRIANRLLRRVRDYAAVKAPGPITGAIAATALELYNVDPCGLD 287

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             D R L+ +  NFGGGPVG+ET++A   E    +E++ EPY++Q G++QRTP GR+  P
Sbjct: 288 WTDRRLLSHLIENFGGGPVGLETLAAATGEDAQTVEEVYEPYLLQIGYLQRTPPGRVATP 347

Query: 322 IAWQHLGIDIPH 333
            AW+HLG + P 
Sbjct: 348 AAWRHLGYEPPQ 359


>gi|15827160|ref|NP_301423.1| Holliday junction DNA helicase RuvB [Mycobacterium leprae TN]
 gi|221229638|ref|YP_002503054.1| Holliday junction DNA helicase RuvB [Mycobacterium leprae Br4923]
 gi|13432236|sp|P40833|RUVB_MYCLE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|254767434|sp|B8ZUI2|RUVB_MYCLB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|13092708|emb|CAC29991.1| Holliday junction helicase component [Mycobacterium leprae]
 gi|219932745|emb|CAR70576.1| Holliday junction helicase component [Mycobacterium leprae Br4923]
          Length = 349

 Score =  328 bits (840), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 163/331 (49%), Positives = 228/331 (68%), Gaps = 1/331 (0%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           +DR+   +  V + D D+SL RPR+L EF GQ      L++ IE AK R    DH+L  G
Sbjct: 6   LDRDVSPALTVGEADIDVSL-RPRSLREFIGQPRVREQLQLVIEGAKNRGATPDHILLSG 64

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKT+LA ++A ELG + R TSGP + +AGDLA +L+NL + DVLFIDEIHR++   
Sbjct: 65  PPGLGKTSLAMIIAAELGSSLRMTSGPALERAGDLAVMLSNLVEHDVLFIDEIHRIARPA 124

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMEDF++D++VG+GP A S+ + ++ FTL+ ATTR G LT PL+DRFG    ++
Sbjct: 125 EEMLYLAMEDFRVDVIVGKGPGATSIPLEVAPFTLVGATTRSGALTGPLRDRFGFTAHMD 184

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FYE  +L+ ++ R A + G+ +  EA  EIA RSRGTPRIA RLLRRVRDFAEV     I
Sbjct: 185 FYEPTELEGVLARAAGILGIELGVEAGAEIARRSRGTPRIANRLLRRVRDFAEVRADGVI 244

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           TR++A AAL    +D++G D+LD   L+ + R+FGGGPVG+ T++  + E    +E++ E
Sbjct: 245 TRDVAKAALAVYDVDELGLDRLDRAVLSALTRSFGGGPVGVSTLAVAVGEEATTVEEVCE 304

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           P++++ G + RTPRGR+    AW +L +  P
Sbjct: 305 PFLVRAGMVARTPRGRVATAQAWTYLCMTPP 335


>gi|15825807|pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
          Length = 334

 Score =  328 bits (840), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 160/318 (50%), Positives = 219/318 (68%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           D+ +  LRP++L+EF GQ      L + +EAAK R E LDHVL  GPPGLGKTTLA ++A
Sbjct: 13  DSGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIA 72

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
            EL  N   TSGPV+ K GD+AA+LT+LE  DVLFIDEIHRL+  VEE+LY A+EDFQ+D
Sbjct: 73  SELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQID 132

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           +M+G+GPSA+S++I++  FTL+ ATTR GLL++PL+  FGI + L+FY +++LK I++R 
Sbjct: 133 IMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSAFGIILELDFYTVKELKEIIKRA 192

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255
           A L  + + D AA  IA RSRGTPRIA RL +RVRD   V  A  I  +I    +  L I
Sbjct: 193 ASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLNI 252

Query: 256 DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR 315
           D  G D+ D + L  I   + GGPVG+  ++A L    D + ++ EPY++Q GF+ RTPR
Sbjct: 253 DDEGLDEFDRKILKTIIEIYRGGPVGLNALAASLGVEADTLSEVYEPYLLQAGFLARTPR 312

Query: 316 GRLLMPIAWQHLGIDIPH 333
           GR++   A++HL  ++P 
Sbjct: 313 GRIVTEKAYKHLKYEVPE 330


>gi|222824270|ref|YP_002575844.1| Holliday junction DNA helicase, ATPase motor protein [Campylobacter
           lari RM2100]
 gi|254767416|sp|B9KDF4|RUVB_CAMLR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|222539491|gb|ACM64592.1| Holliday junction DNA helicase, ATPase motor protein [Campylobacter
           lari RM2100]
          Length = 336

 Score =  328 bits (840), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 155/297 (52%), Positives = 218/297 (73%), Gaps = 1/297 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP   + + GQ     NL++FI+AAK R E LDH+LF GP GLGKTTLA +++ E+  N
Sbjct: 20  LRPSNFDGYIGQENIKKNLEIFIKAAKKRNECLDHILFSGPAGLGKTTLANIISYEMNAN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            ++T+ P+I K+GDLAA+LTNL + D+LFIDEIHRLS  +EE+LYPAMEDF+LD+++G G
Sbjct: 80  IKTTAAPMIEKSGDLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+A+++KI+L +FTLI ATTR G+L+NPL+DRFG+  RL FY+ E+L  I+++ A     
Sbjct: 140 PAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKNEELAIILEKAALKLNK 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
                AA EIA RSR TPRIA RLL+RVRDFA+V   + I+ + A  AL  L ++++GFD
Sbjct: 200 TCEKNAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIISEKRAKEALDSLGVNELGFD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRL 318
            +DLRYL ++       P+G+ +I+A LSE  + IED+IEPY++  G+I+RT +GR+
Sbjct: 260 AMDLRYLELLTEA-KRKPIGLSSIAAALSEDENTIEDVIEPYLLANGYIERTAKGRI 315


>gi|15674280|ref|NP_268453.1| Holliday junction DNA helicase RuvB [Streptococcus pyogenes M1 GAS]
 gi|56808877|ref|ZP_00366587.1| COG2255: Holliday junction resolvasome, helicase subunit
           [Streptococcus pyogenes M49 591]
 gi|71909849|ref|YP_281399.1| Holliday junction DNA helicase RuvB [Streptococcus pyogenes
           MGAS5005]
 gi|94989546|ref|YP_597646.1| Holliday junction DNA helicase RuvB [Streptococcus pyogenes
           MGAS10270]
 gi|139472919|ref|YP_001127634.1| Holliday junction DNA helicase RuvB [Streptococcus pyogenes str.
           Manfredo]
 gi|209558619|ref|YP_002285091.1| Holliday junction DNA helicase RuvB [Streptococcus pyogenes NZ131]
 gi|306828269|ref|ZP_07461528.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           pyogenes ATCC 10782]
 gi|20140203|sp|Q9A1Y1|RUVB_STRP1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|68715288|sp|Q5XEE4|RUVB_STRP6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|123382465|sp|Q1JJ71|RUVB_STRPD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|166231560|sp|A2RC05|RUVB_STRPG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|172046748|sp|Q1J924|RUVB_STRPF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|226698786|sp|B5XJ28|RUVB_STRPZ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|13621359|gb|AAK33175.1| putative Holliday junction DNA helicase, subunit B [Streptococcus
           pyogenes M1 GAS]
 gi|71852631|gb|AAZ50654.1| holliday junction DNA helicase [Streptococcus pyogenes MGAS5005]
 gi|94543054|gb|ABF33102.1| Holliday junction DNA helicase ruvB [Streptococcus pyogenes
           MGAS10270]
 gi|134271165|emb|CAM29377.1| Holliday junction DNA helicase, subunit B [Streptococcus pyogenes
           str. Manfredo]
 gi|209539820|gb|ACI60396.1| Holliday junction DNA helicase ruvB [Streptococcus pyogenes NZ131]
 gi|304429542|gb|EFM32592.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           pyogenes ATCC 10782]
          Length = 332

 Score =  328 bits (840), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 162/323 (50%), Positives = 224/323 (69%), Gaps = 1/323 (0%)

Query: 7   LLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           +L  NV   E+     LRP+ L E+ GQ +      +FIEAAK R E+LDHVL  GPPGL
Sbjct: 4   ILDNNVMGNEEFSDRTLRPQYLHEYIGQDKVKEQFAIFIEAAKRRDESLDHVLLFGPPGL 63

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTT+A V+A ELGVN + TSGP + KAGDL A+L  LE  D+LFIDEIHR+ + VEE+L
Sbjct: 64  GKTTMAFVIANELGVNLKQTSGPAVEKAGDLVAILNELEPGDILFIDEIHRMPMSVEEVL 123

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           Y AMEDF +D+M+G G ++RS+ ++L  FTLI ATTR G+L+NPL+ RFGI   + +Y+ 
Sbjct: 124 YSAMEDFYIDIMIGAGDTSRSIHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYQE 183

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           +DL  IV+R A +  + +  EAA ++A RSRGTPRIA RLL+RVRD+A++     IT +I
Sbjct: 184 KDLTEIVERTATIFEIKIDHEAARKLACRSRGTPRIANRLLKRVRDYAQIIGDGIITAQI 243

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
            D AL  L +D+ G D +D + L  +   + GGPVG+ T+S  ++E R+ +E++ EPY+I
Sbjct: 244 TDRALTMLDVDREGLDYIDQKILRTMIEMYQGGPVGLGTLSVNIAEERNTVEEMYEPYLI 303

Query: 306 QQGFIQRTPRGRLLMPIAWQHLG 328
           Q+GF+ RT  GR+    A++HLG
Sbjct: 304 QKGFLMRTRTGRVATQKAYRHLG 326


>gi|313679564|ref|YP_004057303.1| holliday junction DNA helicase subunit ruvb [Oceanithermus
           profundus DSM 14977]
 gi|313152279|gb|ADR36130.1| Holliday junction DNA helicase subunit RuvB [Oceanithermus
           profundus DSM 14977]
          Length = 328

 Score =  328 bits (840), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 169/312 (54%), Positives = 221/312 (70%), Gaps = 1/312 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP  L+++ GQ    + L V+++AA+ R E LDH+L  GPPGLGKTTLA V+A ELGVN
Sbjct: 7   LRPERLDDYVGQERLKAKLAVYLQAARQRGEPLDHLLLFGPPGLGKTTLAHVIAAELGVN 66

Query: 82  FRSTSGPVIAKAGDLAALLTN-LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
            R TSGP I K GDLAA+LTN LE+ DVLFIDEIHRLS   EE LYPAMEDF++D+++G+
Sbjct: 67  IRVTSGPAIEKPGDLAAILTNSLEEGDVLFIDEIHRLSRTAEEHLYPAMEDFKIDIVIGQ 126

Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
           GP+AR+++++L RFTLI ATTR GL++ PL+ RFGI   L FY  E+L   V+R A+L G
Sbjct: 127 GPAARTIRLDLPRFTLIGATTRPGLISGPLRSRFGIVEHLEFYSEEELARGVERDARLMG 186

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGF 260
           +AV  EAA EI  RSRGT R+A RL RRVRD+AEVA  + ++      AL  L +D++G 
Sbjct: 187 IAVEREAALEIGRRSRGTMRVAKRLFRRVRDYAEVAGEEVVSLARTRQALDALGLDELGL 246

Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320
           +  D R L  +   F GGPVG+ET++  + E    +E++ EPY+IQ G IQRTPRGR+  
Sbjct: 247 EARDRRILETMIVKFAGGPVGLETLATAMHEDPATLEEVHEPYLIQLGLIQRTPRGRVAT 306

Query: 321 PIAWQHLGIDIP 332
             A++HLG   P
Sbjct: 307 ARAYEHLGHPPP 318


>gi|50913430|ref|YP_059402.1| Holliday junction DNA helicase RuvB [Streptococcus pyogenes
           MGAS10394]
 gi|50902504|gb|AAT86219.1| Holliday junction DNA helicase [Streptococcus pyogenes MGAS10394]
          Length = 356

 Score =  328 bits (840), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 162/323 (50%), Positives = 224/323 (69%), Gaps = 1/323 (0%)

Query: 7   LLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           +L  NV   E+     LRP+ L E+ GQ +      +FIEAAK R E+LDHVL  GPPGL
Sbjct: 28  ILDNNVMGNEEFSDRTLRPQYLHEYIGQDKVKEQFAIFIEAAKRRDESLDHVLLFGPPGL 87

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTT+A V+A ELGVN + TSGP + KAGDL A+L  LE  D+LFIDEIHR+ + VEE+L
Sbjct: 88  GKTTMAFVIANELGVNLKQTSGPAVEKAGDLVAILNELEPGDILFIDEIHRMPMSVEEVL 147

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           Y AMEDF +D+M+G G ++RS+ ++L  FTLI ATTR G+L+NPL+ RFGI   + +Y+ 
Sbjct: 148 YSAMEDFYIDIMIGAGDTSRSIHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYQE 207

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           +DL  IV+R A +  + +  EAA ++A RSRGTPRIA RLL+RVRD+A++     IT +I
Sbjct: 208 KDLTEIVERTATIFEIKIDHEAARKLACRSRGTPRIANRLLKRVRDYAQIIGDGIITAQI 267

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
            D AL  L +D+ G D +D + L  +   + GGPVG+ T+S  ++E R+ +E++ EPY+I
Sbjct: 268 TDRALTMLDVDREGLDYIDQKILRTMIEMYQGGPVGLGTLSVNIAEERNTVEEMYEPYLI 327

Query: 306 QQGFIQRTPRGRLLMPIAWQHLG 328
           Q+GF+ RT  GR+    A++HLG
Sbjct: 328 QKGFLMRTRTGRVATQKAYRHLG 350


>gi|94993433|ref|YP_601531.1| Holliday junction DNA helicase RuvB [Streptococcus pyogenes
           MGAS10750]
 gi|94546941|gb|ABF36987.1| Holliday junction DNA helicase ruvB [Streptococcus pyogenes
           MGAS10750]
          Length = 356

 Score =  328 bits (840), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 162/323 (50%), Positives = 224/323 (69%), Gaps = 1/323 (0%)

Query: 7   LLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           +L  NV   E+     LRP+ L E+ GQ +      +FIEAAK R E+LDHVL  GPPGL
Sbjct: 28  ILDNNVMGNEEFSDRTLRPQYLHEYIGQDKVKEQFAIFIEAAKRRDESLDHVLLFGPPGL 87

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTT+A V+A ELGVN + TSGP + KAGDL A+L  LE  D+LFIDEIHR+ + VEE+L
Sbjct: 88  GKTTMAFVIANELGVNLKQTSGPAVEKAGDLVAILNELEPGDILFIDEIHRMPMSVEEVL 147

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           Y AMEDF +D+M+G G ++RS+ ++L  FTLI ATTR G+L+NPL+ RFGI   + +Y+ 
Sbjct: 148 YSAMEDFYIDIMIGAGDTSRSIHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYQE 207

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           +DL  IV+R A +  + +  EAA ++A RSRGTPRIA RLL+RVRD+A++     IT +I
Sbjct: 208 KDLTEIVERTATIFEIKIDHEAARKLACRSRGTPRIANRLLKRVRDYAQIIGDGIITAQI 267

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
            D AL  L +D+ G D +D + L  +   + GGPVG+ T+S  ++E R+ +E++ EPY+I
Sbjct: 268 TDRALTMLDVDREGLDYIDQKILRTMIEMYQGGPVGLGTLSVNIAEERNTVEEMYEPYLI 327

Query: 306 QQGFIQRTPRGRLLMPIAWQHLG 328
           Q+GF+ RT  GR+    A++HLG
Sbjct: 328 QKGFLMRTRTGRVATQKAYRHLG 350


>gi|325995675|gb|ADZ51080.1| Holliday junction DNA helicase [Helicobacter pylori 2018]
 gi|325997271|gb|ADZ49479.1| Holliday junction DNA helicase [Helicobacter pylori 2017]
          Length = 336

 Score =  328 bits (840), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 158/311 (50%), Positives = 227/311 (72%), Gaps = 3/311 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP   E+F GQ +  SNL++ I AAK R E+LDH+LF GPPGLGKT+++ ++A+E+  N
Sbjct: 21  LRPNLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + T+ P+I K+GDLAA+LTNL+ +D+LFIDEIHRLS  +EE+LYPAMEDF+LD+++G G
Sbjct: 81  IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSG 140

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+A+++KI+L  FTLI ATTR G+L+NPL+DRFG+  R+ FY   +L  I+++ A     
Sbjct: 141 PAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAAKLNQ 200

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + +E+A EIA RSRGTPRIA RLL+RVRDFA V ++  +   I   AL  L ++++GFD
Sbjct: 201 DIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMDLNITLHALNELGVNELGFD 260

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           + DL YL+++A N  G PVG+ TI+A + E    IED+IEP+++  G+++RT +GR+  P
Sbjct: 261 EADLAYLSLLA-NAQGKPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATP 319

Query: 322 IAWQHLGIDIP 332
               H  + IP
Sbjct: 320 --KTHALLKIP 328


>gi|256832600|ref|YP_003161327.1| Holliday junction DNA helicase RuvB [Jonesia denitrificans DSM
           20603]
 gi|256686131|gb|ACV09024.1| Holliday junction DNA helicase RuvB [Jonesia denitrificans DSM
           20603]
          Length = 352

 Score =  328 bits (840), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 167/333 (50%), Positives = 227/333 (68%), Gaps = 1/333 (0%)

Query: 2   MDREGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           +D + L+S      E A  + LRPRTL EF GQ      LK+ ++AAK R  + DHVL  
Sbjct: 13  LDSQRLVSNGADDLERAAEAALRPRTLTEFVGQPIVREQLKLVLDAAKGRGASPDHVLLS 72

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A ELGV+ R TSGP I  AGDLAA+L++L++ +VLFIDEIHRL+  
Sbjct: 73  GPPGLGKTTLAMIIAAELGVSLRVTSGPAIQHAGDLAAVLSSLDEGEVLFIDEIHRLARP 132

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            EE+LY AMEDF++D++VG+G  A ++ ++L RFT + ATTR GLL  PL+DRFG    L
Sbjct: 133 AEELLYVAMEDFRVDVVVGKGAGASAIPLSLPRFTAVGATTRAGLLPAPLRDRFGFTGHL 192

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           +FY+  DL+ +V R A L G+ ++ +AA EIA RSRGTPRIA RLLRRVRD+A+V     
Sbjct: 193 DFYDATDLERVVHRSAHLLGVELSPQAAQEIATRSRGTPRIANRLLRRVRDWAQVKGTGV 252

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +    A AAL    +D +G D+LD   LT +   FGGGPVG+ T++  + E  + +E + 
Sbjct: 253 LDLSAAQAALTVYEVDALGLDRLDRAVLTALCTRFGGGPVGLSTLAVTVGEEPETVETVA 312

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EP+++++G + RTPRGR+  P  WQHLG+  P 
Sbjct: 313 EPFLVREGLMGRTPRGRIATPATWQHLGLTPPQ 345


>gi|308182557|ref|YP_003926684.1| Holliday junction DNA helicase RuvB [Helicobacter pylori PeCan4]
 gi|308064742|gb|ADO06634.1| Holliday junction DNA helicase RuvB [Helicobacter pylori PeCan4]
          Length = 336

 Score =  327 bits (839), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 158/311 (50%), Positives = 227/311 (72%), Gaps = 3/311 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP   E+F GQ +  SNL++ I AAK R E+LDH+LF GPPGLGKT+++ ++A+E+  N
Sbjct: 21  LRPNLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + T+ P+I K+GDLAA+LTNL+ +D+LFIDEIHRLS  +EE+LYPAMEDF+LD+++G G
Sbjct: 81  IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSG 140

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+A+++KI+L  FTLI ATTR G+L+NPL+DRFG+  R+ FY   +L  I+++ A     
Sbjct: 141 PAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAATKLNQ 200

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + +E+A EIA RSRGTPRIA RLL+RVRDFA V ++  +   I   AL  L ++++GFD
Sbjct: 201 DIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMDLNITLHALNELGVNELGFD 260

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           + DL YL+++A N  G PVG+ TI+A + E    IED+IEP+++  G+++RT +GR+  P
Sbjct: 261 EADLAYLSLLA-NAQGKPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATP 319

Query: 322 IAWQHLGIDIP 332
               H  + IP
Sbjct: 320 --KTHALLKIP 328


>gi|328947935|ref|YP_004365272.1| Holliday junction ATP-dependent DNA helicase ruvB [Treponema
           succinifaciens DSM 2489]
 gi|328448259|gb|AEB13975.1| Holliday junction ATP-dependent DNA helicase ruvB [Treponema
           succinifaciens DSM 2489]
          Length = 380

 Score =  327 bits (839), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 158/319 (49%), Positives = 216/319 (67%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           S +D   + LRP  L EF GQ     NL VFI+AA+ R EALDH+  +GPPGLGKTTLAQ
Sbjct: 50  SSDDVQENSLRPALLGEFLGQQTVKENLSVFIDAARKRHEALDHLFLIGPPGLGKTTLAQ 109

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           + A ELG +F+ TS P + K  DLA +L+ +  R V FIDEIHRL   +EE+LY AMED+
Sbjct: 110 ITANELGADFKVTSAPALEKPKDLAGILSTISPRTVFFIDEIHRLKPAIEEMLYIAMEDY 169

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           +LD ++G+G +AR+V+I + +FTL+ ATT+ G++++PL  RFGI  R +FY  E+L +I+
Sbjct: 170 ELDWVIGQGAAARTVRIPIPKFTLVGATTKAGMVSSPLISRFGIIQRFSFYTKEELASII 229

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           +R AK+  + V D+AA  +A  SRGTPR+  R+LRR+RDFA+V  +  IT+ I    L R
Sbjct: 230 RRSAKILNVQVEDDAALLMAGCSRGTPRVTNRILRRMRDFAQVEGSGVITKSIVKKGLER 289

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D +G +  D   L  I + FGGGPVG ET++  + E  D +ED  EPY+IQ G +QR
Sbjct: 290 LGVDSLGLENYDREILLAIIKKFGGGPVGAETLAISIGESMDTLEDYYEPYLIQCGLLQR 349

Query: 313 TPRGRLLMPIAWQHLGIDI 331
           TPRGR+    A+ HLGI  
Sbjct: 350 TPRGRVATEKAYNHLGISF 368


>gi|208434335|ref|YP_002266001.1| Holliday junction DNA helicase [Helicobacter pylori G27]
 gi|226698779|sp|B5ZAF5|RUVB_HELPG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|208432264|gb|ACI27135.1| Holliday junction DNA helicase [Helicobacter pylori G27]
          Length = 336

 Score =  327 bits (839), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 158/311 (50%), Positives = 227/311 (72%), Gaps = 3/311 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP   E+F GQ +  SNL++ I AAK R E+LDH+LF GPPGLGKT+++ ++A+E+  N
Sbjct: 21  LRPNLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + T+ P+I K+GDLAA+LTNL+ +D+LFIDEIHRLS  +EE+LYPAMEDF+LD+++G G
Sbjct: 81  IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSG 140

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+A+++KI+L  FTLI ATTR G+L+NPL+DRFG+  R+ FY   +L  I+++ A     
Sbjct: 141 PAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAVKLNQ 200

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + +E+A EIA RSRGTPRIA RLL+RVRDFA V ++  +   I   AL  L ++++GFD
Sbjct: 201 DIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMDLNITLHALNELGVNELGFD 260

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           + DL YL+++A N  G PVG+ TI+A + E    IED+IEP+++  G+++RT +GR+  P
Sbjct: 261 EADLAYLSLLA-NAQGKPVGLNTIAASMREDEGTIEDMIEPFLLANGYLERTAKGRIATP 319

Query: 322 IAWQHLGIDIP 332
               H  + IP
Sbjct: 320 --KTHALLKIP 328


>gi|307637084|gb|ADN79534.1| Holliday junction DNA helicase [Helicobacter pylori 908]
          Length = 336

 Score =  327 bits (839), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 158/311 (50%), Positives = 227/311 (72%), Gaps = 3/311 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP   E+F GQ +  SNL++ I AAK R E+LDH+LF GPPGLGKT+++ ++A+E+  N
Sbjct: 21  LRPNLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + T+ P+I K+GDLAA+LTNL+ +D+LFIDEIHRLS  +EE+LYPAMEDF+LD+++G G
Sbjct: 81  IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSG 140

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+A+++KI+L  FTLI ATTR G+L+NPL+DRFG+  R+ FY   +L  I+++ A     
Sbjct: 141 PAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAAKLNQ 200

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + +E+A EIA RSRGTPRIA RLL+RVRDFA V ++  +   I   AL  L ++++GFD
Sbjct: 201 DIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMDLNITLHALNELGVNELGFD 260

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           + DL YL+++A N  G PVG+ TI+A + E    IED+IEP+++  G+++RT +GR+  P
Sbjct: 261 EADLAYLSLLA-NAQGKPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATP 319

Query: 322 IAWQHLGIDIP 332
               H  + IP
Sbjct: 320 --KTHALLKIP 328


>gi|15674188|ref|NP_268363.1| Holliday junction DNA helicase B [Lactococcus lactis subsp. lactis
           Il1403]
 gi|12725271|gb|AAK06304.1|AE006449_10 DNA helicase RuvB [Lactococcus lactis subsp. lactis Il1403]
          Length = 324

 Score =  327 bits (839), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 159/307 (51%), Positives = 216/307 (70%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+   ++ GQ +    L++FI+AAK R E LDHVL  GPPGLGKTT+A V+A ELGVN
Sbjct: 11  LRPQFFNQYIGQDKVKEQLEIFIKAAKMREEVLDHVLLFGPPGLGKTTMAFVIANELGVN 70

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + T+GP I K GDL A+L  LE  DVLFIDEIHR+ + VEE+LY AMEDF +D+M+G G
Sbjct: 71  IKQTAGPAIEKPGDLVAILNELEPGDVLFIDEIHRMPMQVEEVLYSAMEDFYIDIMLGSG 130

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
             +RSV ++L  FTL+ ATTR G+L+NPL+ RFGI   + +Y+  DL+ IV+R A +  +
Sbjct: 131 DGSRSVHLDLPPFTLVGATTRAGMLSNPLRARFGISSHMEYYQERDLEEIVKRTADIFEV 190

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            V D AA EIA+RSRGTPRIA RLL+RVRDFA++     + + I D AL  L +D  G D
Sbjct: 191 EVIDNAALEIALRSRGTPRIANRLLKRVRDFAQIMGDGRVDKAITDKALSILDVDAAGLD 250

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   + GGPVGI T++  ++E R+ +ED+ EPY+IQ+GF+ RT +GR +  
Sbjct: 251 YIDQKILRTMIEMYHGGPVGIGTLAVNIAEDRETVEDMYEPYLIQKGFLMRTKQGRKVTQ 310

Query: 322 IAWQHLG 328
            A++HLG
Sbjct: 311 RAYEHLG 317


>gi|38233960|ref|NP_939727.1| Holliday junction DNA helicase B [Corynebacterium diphtheriae NCTC
           13129]
 gi|47606083|sp|P61530|RUVB_CORDI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|38200222|emb|CAE49906.1| holliday junction DNA-helicase [Corynebacterium diphtheriae]
          Length = 362

 Score =  327 bits (839), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 162/311 (52%), Positives = 220/311 (70%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPR+L+EF GQ +    L + +  AK+R  A DHVL  GPPGLGKTT+A ++A ELG +
Sbjct: 45  LRPRSLDEFIGQPKVRDQLNLVLSGAKSRGVAPDHVLLSGPPGLGKTTMAMIIAYELGTS 104

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++   EE+LY AMEDF++D++VG+G
Sbjct: 105 LRMTSGPALERAGDLAAMLSNLMEGDVLFIDEIHRMARPAEEMLYMAMEDFRIDVIVGKG 164

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P A S+ + L+ FTL+ ATTR G+LT PL+DRFG   ++ FYE+EDL  +V R A + G+
Sbjct: 165 PGATSIPLELAPFTLVGATTRSGMLTGPLRDRFGFTAQMEFYEVEDLTKVVVRAAAVLGV 224

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
           ++  +AA EIA RSRGTPRIA RLLRRVRDFAEV     I    A AAL+   +D+MG D
Sbjct: 225 SIDHDAAVEIASRSRGTPRIANRLLRRVRDFAEVNADGHINLAAAQAALVVFDVDEMGLD 284

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           +LD   L  + +  GGGPVGI T++  + E    +E++ EPY+++ G + RT RGR+   
Sbjct: 285 RLDRAVLEALIKGHGGGPVGINTLALAVGEEPSTVEEVCEPYLVRAGMVTRTGRGRVATA 344

Query: 322 IAWQHLGIDIP 332
            AW+HLG++ P
Sbjct: 345 TAWRHLGLEPP 355


>gi|226366282|ref|YP_002784065.1| Holliday junction DNA helicase RuvB [Rhodococcus opacus B4]
 gi|254767436|sp|C1B4D1|RUVB_RHOOB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|226244772|dbj|BAH55120.1| Holliday junction DNA helicase RuvB [Rhodococcus opacus B4]
          Length = 365

 Score =  327 bits (838), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 163/331 (49%), Positives = 227/331 (68%), Gaps = 1/331 (0%)

Query: 3   DREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           D E  +S ++   D DI + LRP+ L +F GQ      L++ +  AK R    DH+L  G
Sbjct: 10  DGESPVSADLVAGDGDIEASLRPKNLHDFIGQPRVREQLQLVLTGAKMRGGTPDHILLSG 69

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKT++A ++A ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++   
Sbjct: 70  PPGLGKTSMAMIIAAELGSSLRLTSGPALERAGDLAAMLSNLVEGDVLFIDEIHRIARPA 129

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMEDF++D++VG+GP A S+ + ++ FTL+ ATTR G LT PL+DRFG    ++
Sbjct: 130 EEMLYLAMEDFRVDVVVGKGPGATSIPLEVAPFTLVGATTRSGALTGPLRDRFGFTAHMD 189

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FYE  +LK I+ R A + G+ + +EA  EIA RSRGTPRIA RLLRRVRD+AEV     +
Sbjct: 190 FYEPAELKQILMRSAGILGVQLGEEAGAEIASRSRGTPRIANRLLRRVRDYAEVRADGVV 249

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           TREIA AAL    +D++G D+LD   L+ + R+FGGGPVG+ T++  + E    +E++ E
Sbjct: 250 TREIAHAALAVYDVDQLGLDRLDRSVLSALVRSFGGGPVGVSTLAVAVGEEPATVEEVCE 309

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           P++++ G I RTPRGR+    AW  LG+  P
Sbjct: 310 PFLVRAGMIARTPRGRVATAAAWTQLGLTPP 340


>gi|15645673|ref|NP_207850.1| Holliday junction DNA helicase RuvB [Helicobacter pylori 26695]
 gi|3122841|sp|O25699|RUVB_HELPY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|2314203|gb|AAD08100.1| Holliday junction DNA helicase (ruvB) [Helicobacter pylori 26695]
          Length = 336

 Score =  327 bits (838), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 161/322 (50%), Positives = 231/322 (71%), Gaps = 5/322 (1%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           L   +SQE +    LRP   E+F GQ +  SNL++ I AAK R E+LDH+LF GPPGLGK
Sbjct: 11  LDFEISQEVS----LRPSLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGK 66

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127
           T+++ ++A+E+  N + T+ P+I K+GDLAA+LTNL+ +D+LFIDEIHRLS  +EE+LYP
Sbjct: 67  TSISHIIAKEMETNIKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYP 126

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           AMEDF+LD+++G GP+A+++KI+L  FTLI ATTR G+L+NPL+DRFG+  R+ FY   +
Sbjct: 127 AMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQFYNPSE 186

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           L  I+++ A      +  E+A EIA RSRGTPRIA RLL+RVRDFA V ++  +   I  
Sbjct: 187 LALIIKKAAVKLNQDIKQESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMDLNITL 246

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
            AL  L ++++GFD+ DL YL+++A N  G PVG+ TI+A + E    IED+IEP+++  
Sbjct: 247 HALNELGVNELGFDEADLAYLSLLA-NAQGKPVGLNTIAASMREDEGTIEDVIEPFLLAN 305

Query: 308 GFIQRTPRGRLLMPIAWQHLGI 329
           G+++RT +GR+  P   + L I
Sbjct: 306 GYLERTAKGRIATPKTHELLKI 327


>gi|15611434|ref|NP_223085.1| Holliday junction DNA helicase RuvB [Helicobacter pylori J99]
 gi|6685960|sp|Q9ZM57|RUVB_HELPJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|4154888|gb|AAD05938.1| HOLLIDAY JUNCTION DNA HELICASE RUVB [Helicobacter pylori J99]
          Length = 336

 Score =  327 bits (838), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 158/311 (50%), Positives = 227/311 (72%), Gaps = 3/311 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP   E+F GQ +  SNL++ I AAK R E+LDH+LF GPPGLGKT+++ ++A+E+  N
Sbjct: 21  LRPNLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + T+ P+I K+GDLAA+LTNL+ +D+LFIDEIHRLS  +EE+LYPAMEDF+LD+++G G
Sbjct: 81  IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSG 140

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+A+++KI+L  FTLI ATTR G+L+NPL+DRFG+  R+ FY   +L  I+++ A     
Sbjct: 141 PAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQFYSPSELSLIIKKAAAKLNQ 200

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + +E+A EIA RSRGTPRIA RLL+RVRDFA V ++  +   I   AL  L ++++GFD
Sbjct: 201 DIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMDLSITLHALNELGVNELGFD 260

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           + DL YL+++A N  G PVG+ TI+A + E    IED+IEP+++  G+++RT +GR+  P
Sbjct: 261 EADLAYLSLLA-NAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATP 319

Query: 322 IAWQHLGIDIP 332
               H  + IP
Sbjct: 320 --KTHALLKIP 328


>gi|145220213|ref|YP_001130922.1| Holliday junction DNA helicase B [Prosthecochloris vibrioformis DSM
           265]
 gi|189046041|sp|A4SG11|RUVB_PROVI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|145206377|gb|ABP37420.1| Holliday junction DNA helicase RuvB [Chlorobium phaeovibrioides DSM
           265]
          Length = 346

 Score =  327 bits (838), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 161/297 (54%), Positives = 213/297 (71%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  +E+FTGQ     NLKVFI AA+ R EALDHVL  GPPGLGKTTLA ++A E+G +
Sbjct: 21  IRPARMEDFTGQQRLTDNLKVFISAARMREEALDHVLLSGPPGLGKTTLAHIIAAEMGSS 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R+TSGP++ KAG+LA LLT L+  DVLFIDEIHR+   VEE LY AMEDF++D+M+  G
Sbjct: 81  IRATSGPLLDKAGNLAGLLTGLKRGDVLFIDEIHRMPPAVEEYLYSAMEDFRIDIMIDSG 140

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSAR+V++ +  FTL+ ATTR GLLT+PL+ RFGI  R ++Y  + L+ IV R + +  +
Sbjct: 141 PSARAVQLKIEPFTLVGATTRSGLLTSPLRARFGINSRFDYYSPDLLEGIVMRASGILSI 200

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  +AA EIA RSRGTPRIA RLLRR RDFA+V  A  I+R IA   L  L ID+ G D
Sbjct: 201 GIDQDAASEIAGRSRGTPRIANRLLRRARDFAQVEKAAVISRRIAMKTLECLDIDEEGLD 260

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRL 318
            +D + +  I   F GGPVG+ +++  + E +D IE++ EPY+IQ G++ RTPRGR+
Sbjct: 261 DMDKKIMDTIVNRFSGGPVGVASLAVSVGEEQDTIEEVYEPYLIQAGYLSRTPRGRV 317


>gi|315586379|gb|ADU40760.1| crossover junction ATP-dependent DNA helicase RuvB [Helicobacter
           pylori 35A]
          Length = 336

 Score =  327 bits (838), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 158/311 (50%), Positives = 227/311 (72%), Gaps = 3/311 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP   E+F GQ +  SNL++ I AAK R E+LDH+LF GPPGLGKT+++ ++A+E+  N
Sbjct: 21  LRPNLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + T+ P+I K+GDLAA+LTNL+ +D+LFIDEIHRLS  +EE+LYPAMEDF+LD+++G G
Sbjct: 81  IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSG 140

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+A+++KI+L  FTLI ATTR G+L+NPL+DRFG+  R+ FY   +L  I+++ A     
Sbjct: 141 PAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAAKLNQ 200

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + +E+A EIA RSRGTPRIA RLL+RVRDFA V ++  +   I   AL  L ++++GFD
Sbjct: 201 DIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMDLNITLHALNELGVNELGFD 260

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           + DL YL+++A N  G PVG+ TI+A + E    IED+IEP+++  G+++RT +GR+  P
Sbjct: 261 EADLAYLSLLA-NAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATP 319

Query: 322 IAWQHLGIDIP 332
               H  + IP
Sbjct: 320 --KTHALLKIP 328


>gi|117928550|ref|YP_873101.1| Holliday junction DNA helicase RuvB [Acidothermus cellulolyticus
           11B]
 gi|171460815|sp|A0LUK5|RUVB_ACIC1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|117649013|gb|ABK53115.1| Holliday junction DNA helicase subunit RuvB [Acidothermus
           cellulolyticus 11B]
          Length = 367

 Score =  327 bits (838), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 168/320 (52%), Positives = 217/320 (67%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           S E A  + LRPR L+EF GQ      L + ++ AK R    DH+L  GPPGLGKTTLA 
Sbjct: 26  SDEHAVEAALRPRRLDEFVGQQRVRDQLSLILDGAKQRGRPPDHILLSGPPGLGKTTLAM 85

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           +VA EL    R TSGP I  AGDLAA+LT L + +VLF+DEIHR++   EE+LY AMEDF
Sbjct: 86  IVAAELNTPIRVTSGPAIQHAGDLAAVLTQLSEGEVLFLDEIHRMARPAEEMLYLAMEDF 145

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           ++D++VG+GP A  + + L+ FTLI ATTR GLL  PL+DRFG   RL+FYE  DL+ IV
Sbjct: 146 RVDVVVGKGPGASVIPLELAPFTLIGATTRTGLLPGPLRDRFGFTARLDFYEPADLERIV 205

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R A+L  + +T + A EIA RSRGTPRIA RLLRRVRD+AEV     IT E+A AAL  
Sbjct: 206 HRSARLLDVRITPDGAAEIARRSRGTPRIANRLLRRVRDYAEVRADGVITCEVAQAALAV 265

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
             +D+ G D+LD   L  + R FGGGPVG+ T++  + E  + +E++ EP++ + GF+ R
Sbjct: 266 YEVDEHGLDRLDRAVLDALVRRFGGGPVGLGTVAVAVGEEPETVEEVAEPFLFRAGFLIR 325

Query: 313 TPRGRLLMPIAWQHLGIDIP 332
           TPRGR+    AW+HLGI  P
Sbjct: 326 TPRGRMATAAAWRHLGITPP 345


>gi|145224406|ref|YP_001135084.1| Holliday junction DNA helicase B [Mycobacterium gilvum PYR-GCK]
 gi|315444738|ref|YP_004077617.1| Holliday junction DNA helicase subunit RuvB [Mycobacterium sp.
           Spyr1]
 gi|189046038|sp|A4TBQ5|RUVB_MYCGI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|145216892|gb|ABP46296.1| Holliday junction DNA helicase subunit RuvB [Mycobacterium gilvum
           PYR-GCK]
 gi|315263041|gb|ADT99782.1| Holliday junction DNA helicase subunit RuvB [Mycobacterium sp.
           Spyr1]
          Length = 357

 Score =  327 bits (838), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 165/330 (50%), Positives = 228/330 (69%), Gaps = 1/330 (0%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           +RE   +  V + D D SL RPR+L EF GQ      L++ +E AK R    DH+L  GP
Sbjct: 16  EREVTPALTVGEGDIDASL-RPRSLGEFIGQPRVREQLQLVLEGAKNRGGTPDHILLSGP 74

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKT+LA ++A ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++   E
Sbjct: 75  PGLGKTSLAMIIAAELGSSLRVTSGPALERAGDLAAMLSNLIEGDVLFIDEIHRIARPAE 134

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LY AMEDF++D++VG+GP A S+ + ++ FTL+ ATTR G LT PL+DRFG    ++F
Sbjct: 135 EMLYLAMEDFRVDVVVGKGPGATSIPLEVAPFTLVGATTRSGALTGPLRDRFGFTAHMDF 194

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           YE  +L+ ++ R A + G+ +  EA  EIA RSRGTPRIA RLLRRVRD+AEV     IT
Sbjct: 195 YEPAELERVLARSAGILGIELGAEAGAEIARRSRGTPRIANRLLRRVRDYAEVRADGVIT 254

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           R+IA  AL    +D++G D+LD   L+ + R+FGGGPVG+ T++  + E    +E++ EP
Sbjct: 255 RDIAKYALEVYDVDELGLDRLDRAVLSALTRSFGGGPVGVSTLAVAVGEEATTVEEVCEP 314

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++++ G I RTPRGR+    AW+HLG+  P
Sbjct: 315 FLVRAGMIARTPRGRVATAQAWKHLGMTPP 344


>gi|302338527|ref|YP_003803733.1| Holliday junction DNA helicase RuvB [Spirochaeta smaragdinae DSM
           11293]
 gi|301635712|gb|ADK81139.1| Holliday junction DNA helicase RuvB [Spirochaeta smaragdinae DSM
           11293]
          Length = 348

 Score =  327 bits (838), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 162/328 (49%), Positives = 219/328 (66%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           + +  L     +EDA    LRP+ L+EF GQ     NL VFI AAK R E+LDHV   GP
Sbjct: 5   NSDSFLEAEYREEDALEGRLRPQRLKEFQGQRALKENLSVFISAAKERQESLDHVFLSGP 64

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++A E+G  F+ TS P + K  DLA +LT L + +V FIDE+HRL   +E
Sbjct: 65  PGLGKTTLAGILANEMGAEFKVTSAPALEKPKDLAGILTTLGEGNVFFIDEVHRLKPALE 124

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LY AMED+++D +VG+GP+AR+++I L  FTLI ATT+ G +T PL  RFGI +R++F
Sbjct: 125 EMLYIAMEDYEIDWIVGQGPAARTIRIPLPPFTLIGATTKAGQVTGPLFSRFGITVRMDF 184

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y   DLK I+ R A +  +++ D+A   IA  SRGTPR+A RLLRR+RDFA++    +I 
Sbjct: 185 YTEADLKAIIARSASILSVSIGDDAVAAIAQCSRGTPRVANRLLRRMRDFAQILGNGSID 244

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             I    L RL ID  G ++ D   L  I   + GGPVG ET++  + E  +++ED  EP
Sbjct: 245 AGIVSEGLKRLEIDHFGLEKHDREILRTIIEQYDGGPVGAETLAISVGEAVESLEDFYEP 304

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           ++IQ+GF+QRTPRGR   P+A+QHLGID
Sbjct: 305 FLIQRGFLQRTPRGRTATPLAYQHLGID 332


>gi|15825813|pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
          Length = 334

 Score =  327 bits (837), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 160/318 (50%), Positives = 219/318 (68%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           D+ +  LRP++L+EF GQ      L + +EAAK R E LDHVL  GPPGLGKTTLA ++A
Sbjct: 13  DSGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIA 72

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
            EL  N   TSGPV+ K GD+AA+LT+LE  DVLFIDEIHRL+  VEE+LY A+EDFQ+D
Sbjct: 73  SELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQID 132

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           +M+G+GPSA+S++I++  FTL+ ATTR GLL++PL+ RFGI + L+FY +++LK I++R 
Sbjct: 133 IMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRA 192

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255
           A L  + + D AA  IA RSRGT RIA RL +RVRD   V  A  I  +I    +  L I
Sbjct: 193 ASLMDVEIEDAAAEMIAKRSRGTGRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLNI 252

Query: 256 DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR 315
           D  G D+ D + L  I   + GGPVG+  ++A L    D + ++ EPY++Q GF+ RTPR
Sbjct: 253 DDEGLDEFDRKILKTIIEIYRGGPVGLNALAASLGVEADTLSEVYEPYLLQAGFLARTPR 312

Query: 316 GRLLMPIAWQHLGIDIPH 333
           GR++   A++HL  ++P 
Sbjct: 313 GRIVTEKAYKHLKYEVPE 330


>gi|229824010|ref|ZP_04450079.1| hypothetical protein GCWU000282_01314 [Catonella morbi ATCC 51271]
 gi|229786364|gb|EEP22478.1| hypothetical protein GCWU000282_01314 [Catonella morbi ATCC 51271]
          Length = 342

 Score =  327 bits (837), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 163/329 (49%), Positives = 221/329 (67%), Gaps = 1/329 (0%)

Query: 1   MMDREGLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M   E +LS N   ED  ++  LRP  L E+ GQ +    + ++I+AAK R EALDHVL 
Sbjct: 1   MSHDERMLSGNWQPEDEGNLLSLRPSRLSEYIGQSKIKDEIAIYIQAAKQREEALDHVLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTT+A V+A E+GV   +TSGP I ++GDL ALL  L   D+LFIDEIHRL  
Sbjct: 61  YGPPGLGKTTMAMVIANEMGVGLHTTSGPAIERSGDLLALLNELSPGDILFIDEIHRLPR 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           ++EE+LY AMED+ +D+++G+GPSA  V   L  FTLI ATTR G L+ PL+DRFGI   
Sbjct: 121 VIEEVLYSAMEDYFVDIIIGQGPSAHPVHFELPPFTLIGATTRAGSLSKPLRDRFGIVSH 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           + FY  ++L  IV+R A +    +  E A EI++RSRGTPRIA R+L+RVRDFA+V    
Sbjct: 181 MQFYTPDELALIVERSADVFETRIDSEGAREISLRSRGTPRIANRILKRVRDFAQVKGQG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            +   +A  AL  L ID+ G D +D + L+ +   +GGGPVG+ T++  + E  + +ED+
Sbjct: 241 VVDLRMAQTALEVLEIDQYGLDAIDRKILSCLIEFYGGGPVGLNTLAVNIGEDTETLEDM 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
            EPY++Q GFIQRTPRGR    +A++HLG
Sbjct: 301 YEPYLMQNGFIQRTPRGRQATALAYEHLG 329


>gi|308061740|gb|ADO03628.1| Holliday junction DNA helicase RuvB [Helicobacter pylori Cuz20]
          Length = 338

 Score =  327 bits (837), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 159/311 (51%), Positives = 227/311 (72%), Gaps = 3/311 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP   E+F GQ +  SNL+V I AAK R E+LDH+LF GPPGLGKT+++ ++A+E+  N
Sbjct: 21  LRPNLWEDFIGQEKIKSNLQVSICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + T+ P+I K+GDLAA+LTNL+ +D+LFIDEIHRLS  +EE+LYPAMEDF+LD+++G G
Sbjct: 81  IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSG 140

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+A+++KI+L  FTLI ATTR G+L+NPL+DRFG+  R+ FY   +L  I+++ A     
Sbjct: 141 PAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAVKLNQ 200

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + +E+A EIA RSRGTPRIA RLL+RVRDFA V ++  +   I   AL  L ++++GFD
Sbjct: 201 DIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMDLNITLHALNELGVNELGFD 260

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           + DL YL+++A N  G PVG+ TI+A + E    IED+IEP+++  G+++RT +GR+  P
Sbjct: 261 EADLAYLSLLA-NAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATP 319

Query: 322 IAWQHLGIDIP 332
               H  + IP
Sbjct: 320 --KTHALLKIP 328


>gi|21909568|ref|NP_663836.1| Holliday junction DNA helicase RuvB [Streptococcus pyogenes
           MGAS315]
 gi|28894945|ref|NP_801295.1| Holliday junction DNA helicase RuvB [Streptococcus pyogenes SSI-1]
 gi|25009239|sp|Q8K8X8|RUVB_STRP3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|97190363|sp|Q48VY1|RUVB_STRPM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|21903749|gb|AAM78639.1| putative Holliday junction DNA helicase subunit B [Streptococcus
           pyogenes MGAS315]
 gi|28810190|dbj|BAC63128.1| putative Holliday junction DNA helicase, subunit B [Streptococcus
           pyogenes SSI-1]
          Length = 332

 Score =  327 bits (837), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 158/307 (51%), Positives = 218/307 (71%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E+ GQ +      +FIEAAK R E+LDHVL  GPPGLGKTT+A V+A ELGVN
Sbjct: 20  LRPQYLHEYIGQDKVKEQFAIFIEAAKRRDESLDHVLLFGPPGLGKTTMAFVIANELGVN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGP + KAGDL A+L  LE  D+LFIDEIHR+ + VEE+LY AMEDF +D+M+G G
Sbjct: 80  LKQTSGPAVEKAGDLVAILNELEPGDILFIDEIHRMPMSVEEVLYSAMEDFYIDIMIGAG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            ++RS+ ++L  FTLI ATTR G+L+NPL+ RFGI   + +Y+ +DL  IV+R A +  +
Sbjct: 140 DTSRSIHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYQEKDLTEIVERTATIFEI 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  EAA ++A RSRGTPRIA RLL+RVRD+A++     IT +I D AL  L +D+ G D
Sbjct: 200 KIDHEAARKLACRSRGTPRIANRLLKRVRDYAQIIGDGIITAQITDRALTMLDVDREGLD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   + GGPVG+ T+S  ++E R+ +E++ EPY+IQ+GF+ RT  GR+   
Sbjct: 260 YIDQKILRTMIEMYQGGPVGLGTLSVNIAEERNTVEEMYEPYLIQKGFLMRTRTGRVATQ 319

Query: 322 IAWQHLG 328
            A++HLG
Sbjct: 320 KAYRHLG 326


>gi|283954985|ref|ZP_06372492.1| LOW QUALITY PROTEIN: Holliday junction DNA helicase RuvB
           [Campylobacter jejuni subsp. jejuni 414]
 gi|283793483|gb|EFC32245.1| LOW QUALITY PROTEIN: Holliday junction DNA helicase RuvB
           [Campylobacter jejuni subsp. jejuni 414]
          Length = 335

 Score =  327 bits (837), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 154/309 (49%), Positives = 222/309 (71%), Gaps = 1/309 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP     + GQ     NL VFI AAK R E LDH+LF GP GLGKTTLA +++ E+G N
Sbjct: 20  LRPSNFNGYIGQENIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMGAN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            ++T+ P+I K+GDLAA+LTNL + D+LFIDEIHRLS  +EE+LY AMED++LD+++G G
Sbjct: 80  IKTTAAPMIEKSGDLAAILTNLSEGDILFIDEIHRLSPAIEEVLYSAMEDYRLDIIIGSG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+A+++KI+L +FTLI ATTR G+L+NPL+DRFG+  RL FY+  +L  I+Q+ A     
Sbjct: 140 PAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
              ++AA EIA RSR TPRIA RLL+RVRDFA+V+  + IT +  + AL  L ++++GFD
Sbjct: 200 TCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVSDEEIITEKRTNEALNSLGVNELGFD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +DL+YL ++       P+G+ +I+A LSE  + +ED+IEPY++  G+I+RT +GR+   
Sbjct: 260 AMDLKYLELLTAA-KQRPIGLASIAAALSEDENTVEDVIEPYLLANGYIERTAKGRIAST 318

Query: 322 IAWQHLGID 330
            ++  L ++
Sbjct: 319 KSYNALKLN 327


>gi|109947700|ref|YP_664928.1| Holliday junction DNA helicase RuvB [Helicobacter acinonychis str.
           Sheeba]
 gi|122973263|sp|Q17WP7|RUVB_HELAH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|109714921|emb|CAJ99929.1| holliday junction DNA helicase [Helicobacter acinonychis str.
           Sheeba]
          Length = 336

 Score =  327 bits (837), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 157/311 (50%), Positives = 227/311 (72%), Gaps = 3/311 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP   E + GQ +  +NL++ I AAK R E+LDH+LF GPPGLGKT+++ ++A+E+  N
Sbjct: 21  LRPDLWENYIGQEKIKNNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + T+ P+I K+GDLAA+LTNL+ +D+LFIDEIHRLS  +EE+LYPAMEDF+LD+++G G
Sbjct: 81  IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSG 140

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+A+++KI+L  FTLI ATTRVG+L+NPL+DRFG+  R+ FY   +L  I+++ A     
Sbjct: 141 PAAQTIKIDLPPFTLIGATTRVGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAATKLNQ 200

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + +E+A EIA RSRGTPRIA RLL+RVRDFA V ++  +   I   AL  L ++++GFD
Sbjct: 201 DIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMDLNITLHALNELGVNELGFD 260

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           + DL YL+++A N  G PVG+ TI+A + E    IED+IEP+++  G+++RT +GR+  P
Sbjct: 261 EADLAYLSLLA-NAQGKPVGLNTIAASMREDESTIEDVIEPFLLANGYLERTAKGRIATP 319

Query: 322 IAWQHLGIDIP 332
               H  + IP
Sbjct: 320 --KTHALLKIP 328


>gi|71902701|ref|YP_279504.1| Holliday junction DNA helicase RuvB [Streptococcus pyogenes
           MGAS6180]
 gi|71801796|gb|AAX71149.1| holliday junction DNA helicase [Streptococcus pyogenes MGAS6180]
          Length = 356

 Score =  327 bits (837), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 158/307 (51%), Positives = 218/307 (71%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E+ GQ +      +FIEAAK R E+LDHVL  GPPGLGKTT+A V+A ELGVN
Sbjct: 44  LRPQYLHEYIGQDKVKEQFAIFIEAAKRRDESLDHVLLFGPPGLGKTTMAFVIANELGVN 103

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGP + KAGDL A+L  LE  D+LFIDEIHR+ + VEE+LY AMEDF +D+M+G G
Sbjct: 104 LKQTSGPAVEKAGDLVAILNELEPGDILFIDEIHRMPMSVEEVLYSAMEDFYIDIMIGAG 163

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            ++RS+ ++L  FTLI ATTR G+L+NPL+ RFGI   + +Y+ +DL  IV+R A +  +
Sbjct: 164 DTSRSIHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYQEKDLTEIVERTATIFEI 223

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  EAA ++A RSRGTPRIA RLL+RVRD+A++     IT +I D AL  L +D+ G D
Sbjct: 224 KIDHEAARKLACRSRGTPRIANRLLKRVRDYAQIIGDGIITAQITDRALTMLDVDREGLD 283

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   + GGPVG+ T+S  ++E R+ +E++ EPY+IQ+GF+ RT  GR+   
Sbjct: 284 YIDQKILRTMIEMYQGGPVGLGTLSVNIAEERNTVEEMYEPYLIQKGFLMRTRTGRVATQ 343

Query: 322 IAWQHLG 328
            A++HLG
Sbjct: 344 KAYRHLG 350


>gi|300172984|ref|YP_003772150.1| Holliday junction DNA Helicase RuvB [Leuconostoc gasicomitatum LMG
           18811]
 gi|299887363|emb|CBL91331.1| holliday junction DNA helicase RuvB [Leuconostoc gasicomitatum LMG
           18811]
          Length = 352

 Score =  327 bits (837), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 162/319 (50%), Positives = 219/319 (68%), Gaps = 1/319 (0%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           N +++  + SL RP+ L E+ GQ      L V+I AAK R EALDHVL  GPPGLGKTTL
Sbjct: 29  NEAEQSNEFSL-RPQFLREYIGQAALKEELNVYISAAKQREEALDHVLLFGPPGLGKTTL 87

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           A ++A E+ V+ ++TSGP I K GDL ALL  LE  D+LFIDEIHRL   +EEI+Y AME
Sbjct: 88  AMIIANEMAVHIKTTSGPAIEKPGDLVALLNELEPGDILFIDEIHRLPTNIEEIMYSAME 147

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           D+ +D+MVG+GP+AR+V   L  FTLI ATTR G+L+ PL+DRFGI   + +Y  E+L+ 
Sbjct: 148 DYFVDIMVGQGPTARAVHFPLPPFTLIGATTRPGMLSKPLRDRFGIINAMAYYTPEELQE 207

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           IV R + +    +    A E+A+RSRGTPRIA RLL+RVRDFA+V     I + I D AL
Sbjct: 208 IVVRSSDIFNAPIKLAGAYEVALRSRGTPRIANRLLKRVRDFAQVEGKSAIDKAIVDIAL 267

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
            +L +D  G D+ D ++L  +   + GGPVG+ TI+A + E  + +E ++EPY++Q GF+
Sbjct: 268 DKLRVDNRGLDETDHKFLGTMIEYYKGGPVGLNTIAANIGEEAETLESMVEPYLLQIGFL 327

Query: 311 QRTPRGRLLMPIAWQHLGI 329
           QRTPRGR++   A+ HL I
Sbjct: 328 QRTPRGRVVTESAYAHLKI 346


>gi|210134583|ref|YP_002301022.1| Holliday junction DNA helicase RuvB [Helicobacter pylori P12]
 gi|226698778|sp|B6JKW4|RUVB_HELP2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|210132551|gb|ACJ07542.1| holliday junction DNA helicase [Helicobacter pylori P12]
          Length = 336

 Score =  327 bits (837), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 158/311 (50%), Positives = 227/311 (72%), Gaps = 3/311 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP   E+F GQ +  SNL++ I AAK R E+LDH+LF GPPGLGKT+++ ++A+E+  N
Sbjct: 21  LRPNLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + T+ P+I K+GDLAA+LTNL+ +D+LFIDEIHRLS  +EE+LYPAMEDF+LD+++G G
Sbjct: 81  IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSG 140

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+A+++KI+L  FTLI ATTR G+L+NPL+DRFG+  R+ FY   +L  I+++ A     
Sbjct: 141 PAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQFYSPSELSLIIKKAAVKLNQ 200

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + +E+A EIA RSRGTPRIA RLL+RVRDFA V ++  +   I   AL  L ++++GFD
Sbjct: 201 DIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMDLNITLHALNELGVNELGFD 260

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           + DL YL+++A N  G PVG+ TI+A + E    IED+IEP+++  G+++RT +GR+  P
Sbjct: 261 EADLAYLSLLA-NAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATP 319

Query: 322 IAWQHLGIDIP 332
               H  + IP
Sbjct: 320 --KTHALLKIP 328


>gi|188527198|ref|YP_001909885.1| Holliday junction DNA helicase RuvB [Helicobacter pylori Shi470]
 gi|238691905|sp|B2USM3|RUVB_HELPS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|188143438|gb|ACD47855.1| Holliday junction DNA helicase B [Helicobacter pylori Shi470]
 gi|308063250|gb|ADO05137.1| Holliday junction DNA helicase RuvB [Helicobacter pylori Sat464]
          Length = 336

 Score =  327 bits (837), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 158/311 (50%), Positives = 227/311 (72%), Gaps = 3/311 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP   E++ GQ +  SNL+V I AAK R E+LDH+LF GPPGLGKT+++ ++A+E+  N
Sbjct: 21  LRPNLWEDYIGQEKIKSNLQVSICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + T+ P+I K+GDLAA+LTNL+ +D+LFIDEIHRLS  +EE+LYPAMEDF+LD+++G G
Sbjct: 81  LKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSG 140

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+A+++KI+L  FTLI ATTR G+L+NPL+DRFG+  R+ FY   +L  I+++ A     
Sbjct: 141 PAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAAKLNQ 200

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + +E+A EIA RSRGTPRIA RLL+RVRDFA V ++  +   I   AL  L ++++GFD
Sbjct: 201 DIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMDLNITLHALNELGVNELGFD 260

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           + DL YL+++A N  G PVG+ TI+A + E    IED+IEP+++  G+++RT +GR+  P
Sbjct: 261 EADLAYLSLLA-NAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATP 319

Query: 322 IAWQHLGIDIP 332
               H  + IP
Sbjct: 320 --KTHALLKIP 328


>gi|291301297|ref|YP_003512575.1| Holliday junction DNA helicase RuvB [Stackebrandtia nassauensis DSM
           44728]
 gi|290570517|gb|ADD43482.1| Holliday junction DNA helicase RuvB [Stackebrandtia nassauensis DSM
           44728]
          Length = 359

 Score =  327 bits (837), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 162/311 (52%), Positives = 220/311 (70%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  LEE  GQ      L++ +  A+ R+ A DH+L  GPPGLGKTTLA +VA ELGV+
Sbjct: 30  VRPAKLEELIGQARVREQLELLLSGAQQRSAAPDHILLSGPPGLGKTTLAMIVAAELGVS 89

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGP I ++GDLAA+LT+L   DVLFIDEIHR++   EE+LY AMEDF++D+MVG+G
Sbjct: 90  LRQTSGPAIERSGDLAAVLTSLGPGDVLFIDEIHRIARPAEELLYTAMEDFRVDVMVGKG 149

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P A ++ ++L  FTL+ ATTR GLLT PL+DRFG   +L+FY+  +L++IV R A++  +
Sbjct: 150 PGATAIPLDLEPFTLVGATTRSGLLTGPLRDRFGFVGQLDFYDPPELESIVHRTARILSV 209

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +TD  A EIA RSRGTPRIA RLLRRVRDFA+V     +T+E+A AAL    +D +G D
Sbjct: 210 DITDSGAREIAGRSRGTPRIANRLLRRVRDFAQVRADGHVTQEVASAALALYDVDDIGLD 269

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           +LD   LT +  +FGGGPVG+ T++  + E  D +E++ EPY+++ G + RTPRGR+   
Sbjct: 270 RLDRAVLTALIESFGGGPVGLTTLAVAVGEEPDTVEEVCEPYLVRSGLLARTPRGRVATV 329

Query: 322 IAWQHLGIDIP 332
             W+HLG   P
Sbjct: 330 HGWRHLGRTPP 340


>gi|317177200|dbj|BAJ54989.1| Holliday junction DNA helicase B [Helicobacter pylori F16]
          Length = 336

 Score =  326 bits (836), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 158/311 (50%), Positives = 227/311 (72%), Gaps = 3/311 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP   E++ GQ +  SNL+V I AAK R E+LDH+LF GPPGLGKT+++ ++A+E+  N
Sbjct: 21  LRPNLWEDYIGQEKIKSNLQVSICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + T+ P+I K+GDLAA+LTNL+ +D+LFIDEIHRLS  +EE+LYPAMEDF+LD+++G G
Sbjct: 81  IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSG 140

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+A+++KI+L  FTLI ATTR G+L+NPL+DRFG+  R+ FY   +L  I+++ A     
Sbjct: 141 PAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAAKLNQ 200

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + +E+A EIA RSRGTPRIA RLL+RVRDFA V ++  +   I   AL  L ++++GFD
Sbjct: 201 DIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMDLNITLHALNELGVNELGFD 260

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           + DL YL+++A N  G PVG+ TI+A + E    IED+IEP+++  G+++RT +GR+  P
Sbjct: 261 EADLAYLSLLA-NAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATP 319

Query: 322 IAWQHLGIDIP 332
               H  + IP
Sbjct: 320 --KTHALLKIP 328


>gi|260654962|ref|ZP_05860450.1| holliday junction DNA helicase RuvB [Jonquetella anthropi E3_33 E1]
 gi|260630277|gb|EEX48471.1| holliday junction DNA helicase RuvB [Jonquetella anthropi E3_33 E1]
          Length = 347

 Score =  326 bits (836), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 163/312 (52%), Positives = 218/312 (69%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP TL EF GQ E    L ++++AA+ R E LDH LF GPPGLGKTTL+ ++A E+G +
Sbjct: 23  LRPLTLAEFNGQSEIKEKLSIYMQAARLRGEPLDHTLFYGPPGLGKTTLSGIIAHEMGGS 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R T+GP + K GDLAA+LT+L+D DVLFIDEIHR+SI  EE+LY AMEDF + L+VG+G
Sbjct: 83  LRVTTGPALEKPGDLAAILTSLQDGDVLFIDEIHRMSISTEEVLYSAMEDFSIHLIVGKG 142

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P AR+V + + +FTL+ ATTR+GLL++PL+ RFGI  +L  Y+  +L  I+QRGA L  +
Sbjct: 143 PLARNVTVPMPKFTLVGATTRLGLLSSPLRARFGIVEQLRLYDELELCQILQRGAGLLNV 202

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
           + + E    IA RSRGTPR+A RLLRRVRD A+V     I   +   A+  L +D  GF+
Sbjct: 203 SASSEGLRAIARRSRGTPRVALRLLRRVRDVADVTGQAQIDEALVSQAMDMLGLDDRGFN 262

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             D R +T +   F GGPVG+ TI+A L+E    IED+ EPY+IQQG I+RTPRGR    
Sbjct: 263 AGDRRIITTVVELFSGGPVGLSTIAAALNEEPQTIEDIYEPYLIQQGMIERTPRGRKATE 322

Query: 322 IAWQHLGIDIPH 333
            A+++LG+ +P 
Sbjct: 323 KAYEYLGLPVPQ 334


>gi|78189723|ref|YP_380061.1| Holliday junction DNA helicase RuvB [Chlorobium chlorochromatii
           CaD3]
 gi|97189984|sp|Q3APQ7|RUVB_CHLCH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|78171922|gb|ABB29018.1| Holliday junction DNA helicase RuvB [Chlorobium chlorochromatii
           CaD3]
          Length = 352

 Score =  326 bits (836), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 163/306 (53%), Positives = 216/306 (70%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  +E+F GQ     NLKVFI AAK R +ALDHVL  GPPGLGKTTLA ++A E+G +
Sbjct: 21  IRPIRMEDFAGQQRLTDNLKVFISAAKMRGDALDHVLLSGPPGLGKTTLAYIIASEMGSS 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            ++TSGP++ KAG+LA LLT L+  D+LFIDEIHR+  +VEE LY AMEDF++D+M+  G
Sbjct: 81  IKATSGPLLDKAGNLAGLLTGLQKGDILFIDEIHRMPPMVEEYLYSAMEDFRIDIMLDSG 140

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSAR+V++ +  FTL+ ATTR GLLT+PL+ RFGI  R ++YE E L  I+ R + + G+
Sbjct: 141 PSARAVQLRIEPFTLVGATTRSGLLTSPLRARFGINSRFDYYEPELLTRIIIRASSILGI 200

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  +AA EIA RSRGTPRIA RLLRR RDFA+V    TITR IA   L  L ID+ G D
Sbjct: 201 GIEPDAAAEIAGRSRGTPRIANRLLRRARDFAQVDGISTITRTIAMKTLECLEIDEEGLD 260

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           ++D + +  I   F GGPVGI +++  + E RD IE++ EPY+IQ G++ RT RGR+   
Sbjct: 261 EMDKKIMDTIVNKFSGGPVGIASLAVSVGEERDTIEEVYEPYLIQAGYLARTTRGRVATR 320

Query: 322 IAWQHL 327
            A+   
Sbjct: 321 KAFSRF 326


>gi|217031615|ref|ZP_03437120.1| hypothetical protein HPB128_21g173 [Helicobacter pylori B128]
 gi|298736671|ref|YP_003729199.1| Holliday junction DNA helicase RuvB [Helicobacter pylori B8]
 gi|216946815|gb|EEC25411.1| hypothetical protein HPB128_21g173 [Helicobacter pylori B128]
 gi|298355863|emb|CBI66735.1| holliday junction DNA helicase RuvB [Helicobacter pylori B8]
          Length = 336

 Score =  326 bits (836), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 161/325 (49%), Positives = 232/325 (71%), Gaps = 7/325 (2%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           L   +SQE +    LRP   E+F GQ +  SNL++ I AAK R E+LDH+LF GPPGLGK
Sbjct: 11  LDFEISQEVS----LRPSLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGK 66

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127
           T+++ ++A+E+  N + T+ P+I K+GDLAA+LTNL+ +D+LFIDEIHRLS  +EE+LYP
Sbjct: 67  TSISHIIAKEMETNIKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYP 126

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           AMEDF+LD+++G GP+A+++KI+L  FTLI ATTR G+L+NPL+DRFG+  R+ FY   +
Sbjct: 127 AMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQFYSPSE 186

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           L  I+++ A      + +E+  EIA RSRGTPRIA RLL+RVRDFA V ++  +   I  
Sbjct: 187 LALIIKKAAAKLNQDIKEESTDEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMDLNITL 246

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
            AL  L ++++GFD+ DL YL+++A N  G PVG+ TI+A + E    IED+IEP+++  
Sbjct: 247 HALNELGVNELGFDEADLAYLSLLA-NAQGKPVGLNTIAASMREDEGTIEDVIEPFLLAN 305

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIP 332
           G+++RT +GR+  P    H  + IP
Sbjct: 306 GYLERTAKGRIATP--KTHALLKIP 328


>gi|317010664|gb|ADU84411.1| Holliday junction DNA helicase RuvB [Helicobacter pylori
           SouthAfrica7]
          Length = 336

 Score =  326 bits (836), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 155/308 (50%), Positives = 226/308 (73%), Gaps = 1/308 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP   E++ GQ +  +NL++ I AAK R E+LDH+LF GPPGLGKT+++ ++A+E+  N
Sbjct: 21  LRPDLWEDYIGQEKIKNNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + T+ P+I K+GDLAA+LTNL+ +D+LFIDEIHRLS  +EE+LYPAMEDF+LD+++G G
Sbjct: 81  IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSG 140

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+A+++KI+L  FTLI ATTR G+L+NPL+DRFG+  R+ FY   +L  I+++ A     
Sbjct: 141 PAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAAKLNQ 200

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + +E+A EIA RSRGTPRIA RLL+RVRDFA V ++  +   I   AL  L ++++GFD
Sbjct: 201 DIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMDLNITLHALNALGVNELGFD 260

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           + DL YL+++A N  G PVG+ TI+A + E    IED+IEP+++  G+++RT +GR+  P
Sbjct: 261 EADLAYLSLLA-NAQGKPVGLNTIAASMREDESTIEDVIEPFLLANGYLERTAKGRIATP 319

Query: 322 IAWQHLGI 329
             +  L I
Sbjct: 320 KTYALLKI 327


>gi|172046219|sp|Q1JP25|RUVB_STRPC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|172046744|sp|Q1JE69|RUVB_STRPB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
          Length = 332

 Score =  326 bits (836), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 158/307 (51%), Positives = 218/307 (71%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E+ GQ +      +FIEAAK R E+LDHVL  GPPGLGKTT+A V+A ELGVN
Sbjct: 20  LRPQYLREYIGQDKVKEQFAIFIEAAKRRDESLDHVLLFGPPGLGKTTMAFVIANELGVN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGP + KAGDL A+L  LE  D+LFIDEIHR+ + VEE+LY AMEDF +D+M+G G
Sbjct: 80  LKQTSGPAVEKAGDLVAILNELEPGDILFIDEIHRMPMSVEEVLYSAMEDFYIDIMIGAG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            ++RS+ ++L  FTLI ATTR G+L+NPL+ RFGI   + +Y+ +DL  IV+R A +  +
Sbjct: 140 DTSRSIHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYQEKDLTEIVERTATIFEI 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  EAA ++A RSRGTPRIA RLL+RVRD+A++     IT +I D AL  L +D+ G D
Sbjct: 200 KIDHEAARKLACRSRGTPRIANRLLKRVRDYAQIIGDGIITAQITDRALTMLDVDREGLD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   + GGPVG+ T+S  ++E R+ +E++ EPY+IQ+GF+ RT  GR+   
Sbjct: 260 YIDQKILRTMIEMYQGGPVGLGTLSVNIAEERNTVEEMYEPYLIQKGFLMRTRTGRVATQ 319

Query: 322 IAWQHLG 328
            A++HLG
Sbjct: 320 KAYRHLG 326


>gi|295425861|ref|ZP_06818541.1| crossover junction ATP-dependent DNA helicase RuvB [Lactobacillus
           amylolyticus DSM 11664]
 gi|295064464|gb|EFG55392.1| crossover junction ATP-dependent DNA helicase RuvB [Lactobacillus
           amylolyticus DSM 11664]
          Length = 341

 Score =  326 bits (836), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 164/325 (50%), Positives = 223/325 (68%), Gaps = 1/325 (0%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           +++  +E  ++SL RP++L+++ GQ      + V+I+AA+ R EALDHVL  GPPGLGKT
Sbjct: 16  AQDAEEEQVEMSL-RPQSLDQYLGQARVKKEMAVYIKAARQRDEALDHVLLYGPPGLGKT 74

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           TLA V+A ELGV+ +STSGP I KAGDL ALL+ L+  DVLFIDEIHRL   +EE+LY A
Sbjct: 75  TLAFVIAHELGVHLKSTSGPAIEKAGDLVALLSELDPGDVLFIDEIHRLPKPIEEVLYSA 134

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           MEDF +D+M+GEG +  +V + L  FTLI ATT  G L+ PL+DRFGI   + +Y + +L
Sbjct: 135 MEDFYVDIMIGEGETTHAVHVPLPPFTLIGATTLAGQLSAPLRDRFGIVEHMQYYTVNEL 194

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           + I+QR   +   ++  EAA E+A RSRGTPR+A RLL+RVRDFAEV    TI+ +  + 
Sbjct: 195 EQIIQRSGDVFHTSIAPEAAHELARRSRGTPRVANRLLKRVRDFAEVKGEDTISLKTTEH 254

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL +L +D  G D  D + L  +   +GGGPVGI T++A + E  D IE L EPY++Q G
Sbjct: 255 ALKQLQVDDEGLDLTDRKLLRTMIEGYGGGPVGIRTLAASVGEDIDTIESLYEPYLLQHG 314

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIPH 333
           FI  TPRGR+    A+  LG+  P+
Sbjct: 315 FILLTPRGRMATDKAYAQLGLPNPN 339


>gi|94987667|ref|YP_595768.1| Holliday junction DNA helicase RuvB [Streptococcus pyogenes
           MGAS9429]
 gi|94991534|ref|YP_599633.1| Holliday junction DNA helicase RuvB [Streptococcus pyogenes
           MGAS2096]
 gi|94541175|gb|ABF31224.1| holliday junction DNA helicase [Streptococcus pyogenes MGAS9429]
 gi|94545042|gb|ABF35089.1| Holliday junction DNA helicase ruvB [Streptococcus pyogenes
           MGAS2096]
          Length = 356

 Score =  326 bits (836), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 158/307 (51%), Positives = 218/307 (71%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E+ GQ +      +FIEAAK R E+LDHVL  GPPGLGKTT+A V+A ELGVN
Sbjct: 44  LRPQYLREYIGQDKVKEQFAIFIEAAKRRDESLDHVLLFGPPGLGKTTMAFVIANELGVN 103

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGP + KAGDL A+L  LE  D+LFIDEIHR+ + VEE+LY AMEDF +D+M+G G
Sbjct: 104 LKQTSGPAVEKAGDLVAILNELEPGDILFIDEIHRMPMSVEEVLYSAMEDFYIDIMIGAG 163

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            ++RS+ ++L  FTLI ATTR G+L+NPL+ RFGI   + +Y+ +DL  IV+R A +  +
Sbjct: 164 DTSRSIHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYQEKDLTEIVERTATIFEI 223

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  EAA ++A RSRGTPRIA RLL+RVRD+A++     IT +I D AL  L +D+ G D
Sbjct: 224 KIDHEAARKLACRSRGTPRIANRLLKRVRDYAQIIGDGIITAQITDRALTMLDVDREGLD 283

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   + GGPVG+ T+S  ++E R+ +E++ EPY+IQ+GF+ RT  GR+   
Sbjct: 284 YIDQKILRTMIEMYQGGPVGLGTLSVNIAEERNTVEEMYEPYLIQKGFLMRTRTGRVATQ 343

Query: 322 IAWQHLG 328
            A++HLG
Sbjct: 344 KAYRHLG 350


>gi|297379609|gb|ADI34496.1| Holliday junction DNA helicase RuvB [Helicobacter pylori v225d]
          Length = 336

 Score =  326 bits (836), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 157/311 (50%), Positives = 227/311 (72%), Gaps = 3/311 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP   E++ GQ +  SNL++ I AAK R E+LDH+LF GPPGLGKT+++ ++A+E+  N
Sbjct: 21  LRPNLWEDYIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + T+ P+I K+GDLAA+LTNL+ +D+LFIDEIHRLS  +EE+LYPAMEDF+LD+++G G
Sbjct: 81  IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSG 140

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+A+++KI+L  FTLI ATTR G+L+NPL+DRFG+  R+ FY   +L  I+++ A     
Sbjct: 141 PAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAASKLNQ 200

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + +E+A EIA RSRGTPRIA RLL+RVRDFA V ++  +   I   AL  L ++++GFD
Sbjct: 201 DIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMDLNITLHALNELGVNELGFD 260

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           + DL YL+++A N  G PVG+ TI+A + E    IED+IEP+++  G+++RT +GR+  P
Sbjct: 261 EADLAYLSLLA-NAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATP 319

Query: 322 IAWQHLGIDIP 332
               H  + IP
Sbjct: 320 --KTHALLKIP 328


>gi|78187473|ref|YP_375516.1| Holliday junction DNA helicase RuvB [Chlorobium luteolum DSM 273]
 gi|97190196|sp|Q3B2F8|RUVB_PELLD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|78167375|gb|ABB24473.1| Holliday junction DNA helicase RuvB [Chlorobium luteolum DSM 273]
          Length = 344

 Score =  326 bits (836), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 158/297 (53%), Positives = 216/297 (72%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR +E+FTGQ     NLKVFI AA+ R +ALDHVL  GPPGLGKTTLA ++A E+G +
Sbjct: 21  IRPRRMEDFTGQQRLTDNLKVFISAARMRGDALDHVLLSGPPGLGKTTLAHIIAEEMGGS 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            ++TSGP++ KAG+LA +LT+L+  DVLFIDEIHR+   VEE LY AMEDF++D+M+  G
Sbjct: 81  LKATSGPMLDKAGNLAGILTSLQKGDVLFIDEIHRMPPAVEEYLYSAMEDFRIDIMLDSG 140

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSAR+V++ +  FTL+ ATTR GLLT PL+ RFGI  R ++Y  E L+TI+ R + + G+
Sbjct: 141 PSARAVQLKVEPFTLVGATTRSGLLTAPLRARFGISNRFDYYPPELLETILMRSSTILGI 200

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  +AA EIA RSRGTPRIA RLLRR RDFA+V   + I+R  A   L  L ID+ G D
Sbjct: 201 GIERDAASEIAGRSRGTPRIANRLLRRARDFAQVDGMEIISRPTAMKTLDSLEIDEEGLD 260

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRL 318
           ++D + +  +   F GGPVG+ +++  + E +D IE++ EPY+IQ G++ RTPRGR+
Sbjct: 261 EMDKKIMDAVVNRFSGGPVGVGSLAVSVGEEQDTIEEVYEPYLIQAGYLSRTPRGRV 317


>gi|19745233|ref|NP_606369.1| Holliday junction DNA helicase RuvB [Streptococcus pyogenes
           MGAS8232]
 gi|19747326|gb|AAL96868.1| putative Holliday junction DNA helicase, subunit B [Streptococcus
           pyogenes MGAS8232]
          Length = 354

 Score =  326 bits (836), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 161/323 (49%), Positives = 224/323 (69%), Gaps = 1/323 (0%)

Query: 7   LLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           +L  NV   E+     LRP+ L E+ GQ +      +FIEAAK R E+LDHVL  GPPGL
Sbjct: 26  ILDNNVMGNEEFSDRTLRPQYLHEYIGQDKVKEQFAIFIEAAKRRDESLDHVLLFGPPGL 85

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTT+A V+A ELGVN + TSGP + KAGDL A+L  LE  D+LFIDEIHR+ + VEE+L
Sbjct: 86  GKTTMAFVIANELGVNLKQTSGPAVEKAGDLVAILNELEPGDILFIDEIHRMPMSVEEVL 145

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           Y AMEDF +D+M+G G ++RS+ ++L  FTLI ATTR G+L+NPL+ RFGI   + +Y+ 
Sbjct: 146 YSAMEDFYIDIMIGAGDTSRSIHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYQE 205

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           +DL  IV+R A +  + +  EAA ++A RSRGTPRIA RLL+RVRD+A++     IT +I
Sbjct: 206 KDLTEIVERTATIFEIKIDHEAARKLACRSRGTPRIANRLLKRVRDYAQIIGDGIITAQI 265

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
            D AL  L +D+ G + +D + L  +   + GGPVG+ T+S  ++E R+ +E++ EPY+I
Sbjct: 266 TDRALTMLDVDREGLNYIDQKILRTMIEMYQGGPVGLGTLSVNIAEERNTVEEMYEPYLI 325

Query: 306 QQGFIQRTPRGRLLMPIAWQHLG 328
           Q+GF+ RT  GR+    A++HLG
Sbjct: 326 QKGFLMRTRTGRVATQKAYRHLG 348


>gi|24212372|sp|Q8P302|RUVB_STRP8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
          Length = 332

 Score =  326 bits (835), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 161/323 (49%), Positives = 224/323 (69%), Gaps = 1/323 (0%)

Query: 7   LLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           +L  NV   E+     LRP+ L E+ GQ +      +FIEAAK R E+LDHVL  GPPGL
Sbjct: 4   ILDNNVMGNEEFSDRTLRPQYLHEYIGQDKVKEQFAIFIEAAKRRDESLDHVLLFGPPGL 63

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTT+A V+A ELGVN + TSGP + KAGDL A+L  LE  D+LFIDEIHR+ + VEE+L
Sbjct: 64  GKTTMAFVIANELGVNLKQTSGPAVEKAGDLVAILNELEPGDILFIDEIHRMPMSVEEVL 123

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           Y AMEDF +D+M+G G ++RS+ ++L  FTLI ATTR G+L+NPL+ RFGI   + +Y+ 
Sbjct: 124 YSAMEDFYIDIMIGAGDTSRSIHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYQE 183

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           +DL  IV+R A +  + +  EAA ++A RSRGTPRIA RLL+RVRD+A++     IT +I
Sbjct: 184 KDLTEIVERTATIFEIKIDHEAARKLACRSRGTPRIANRLLKRVRDYAQIIGDGIITAQI 243

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
            D AL  L +D+ G + +D + L  +   + GGPVG+ T+S  ++E R+ +E++ EPY+I
Sbjct: 244 TDRALTMLDVDREGLNYIDQKILRTMIEMYQGGPVGLGTLSVNIAEERNTVEEMYEPYLI 303

Query: 306 QQGFIQRTPRGRLLMPIAWQHLG 328
           Q+GF+ RT  GR+    A++HLG
Sbjct: 304 QKGFLMRTRTGRVATQKAYRHLG 326


>gi|111023846|ref|YP_706818.1| Holliday junction DNA helicase B [Rhodococcus jostii RHA1]
 gi|122955048|sp|Q0S1C6|RUVB_RHOSR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|110823376|gb|ABG98660.1| holliday junction DNA helicase [Rhodococcus jostii RHA1]
          Length = 365

 Score =  326 bits (835), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 162/331 (48%), Positives = 227/331 (68%), Gaps = 1/331 (0%)

Query: 3   DREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           D E  +S ++   D DI + LRP+ L +F GQ      L++ +  AK R    DH+L  G
Sbjct: 10  DEESPVSADLVAGDGDIEASLRPKNLHDFIGQPRVREQLQLVLTGAKMRGGTPDHILLSG 69

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKT++A ++A ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++   
Sbjct: 70  PPGLGKTSMAMIIAAELGSSLRLTSGPALERAGDLAAMLSNLVEGDVLFIDEIHRIARPA 129

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMEDF++D++VG+GP A S+ + ++ FTL+ ATTR G LT PL+DRFG    ++
Sbjct: 130 EEMLYLAMEDFRVDVVVGKGPGATSIPLEVAPFTLVGATTRSGALTGPLRDRFGFTAHMD 189

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FYE  +L+ I+ R A + G+ + +EA  EIA RSRGTPRIA RLLRRVRD+AEV     +
Sbjct: 190 FYEPAELQQILMRSAGILGVQLGEEAGAEIANRSRGTPRIANRLLRRVRDYAEVRADGVV 249

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           TREIA AAL    +D++G D+LD   L+ + R+FGGGPVG+ T++  + E    +E++ E
Sbjct: 250 TREIAHAALAVYDVDQLGLDRLDRSVLSALVRSFGGGPVGVSTLAVAVGEEPATVEEVCE 309

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           P++++ G I RTPRGR+    AW  LG+  P
Sbjct: 310 PFLVRAGMIARTPRGRVATAAAWTQLGLTPP 340


>gi|317181730|dbj|BAJ59514.1| Holliday junction DNA helicase B [Helicobacter pylori F57]
          Length = 336

 Score =  326 bits (835), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 157/311 (50%), Positives = 227/311 (72%), Gaps = 3/311 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP   E++ GQ +  SNL++ I AAK R E+LDH+LF GPPGLGKT+++ ++A+E+  N
Sbjct: 21  LRPNLWEDYIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + T+ P+I K+GDLAA+LTNL+ +D+LFIDEIHRLS  +EE+LYPAMEDF+LD+++G G
Sbjct: 81  IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSG 140

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+A+++KI+L  FTLI ATTR G+L+NPL+DRFG+  R+ FY   +L  I+++ A     
Sbjct: 141 PAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAAKLNQ 200

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + +E+A EIA RSRGTPRIA RLL+RVRDFA V ++  +   I   AL  L ++++GFD
Sbjct: 201 DIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMDLNITLHALNELGVNELGFD 260

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           + DL YL+++A N  G PVG+ TI+A + E    IED+IEP+++  G+++RT +GR+  P
Sbjct: 261 EADLAYLSLLA-NAKGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATP 319

Query: 322 IAWQHLGIDIP 332
               H  + IP
Sbjct: 320 --KTHALLKIP 328


>gi|227432399|ref|ZP_03914389.1| Holliday junction DNA helicase B [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
 gi|227351838|gb|EEJ42074.1| Holliday junction DNA helicase B [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
          Length = 369

 Score =  326 bits (835), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 162/318 (50%), Positives = 216/318 (67%), Gaps = 1/318 (0%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           N  ++ +++SL RP+ L E+ GQ      L V+I AAK R EALDHVL  GPPGLGKTTL
Sbjct: 46  NDEEQRSELSL-RPQFLREYIGQEALKEELNVYISAAKQREEALDHVLLFGPPGLGKTTL 104

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           A ++A E+ VN ++TSGP I K GDL ALL  LE  D+LFIDEIHR+   +EEI+Y AME
Sbjct: 105 AMIIANEMNVNIKTTSGPAIEKPGDLVALLNELEPGDILFIDEIHRIPTNIEEIMYSAME 164

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           D+ +D+MVG+GP+AR V   L  FTLI ATTR G+L+ PL+DRFGI   L +Y  E+L+ 
Sbjct: 165 DYFVDIMVGQGPTARPVHFPLPPFTLIGATTRPGMLSKPLRDRFGIINSLQYYTPEELQQ 224

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           IV R A +    +  E A EI++RSRGTPRIA RLL+RVRDFA+V     I + I    L
Sbjct: 225 IVVRTADIFNAPIKSEGAYEISLRSRGTPRIANRLLKRVRDFAQVEGKDAIDKNIVTIGL 284

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
            +L +D  G D+ D + L  +   + GGPVG+ TI+A + E  + +E ++EPY++Q GF+
Sbjct: 285 DKLRVDNRGLDETDHKLLETMIEYYKGGPVGLNTIAANIGEESETLEAMVEPYLLQIGFL 344

Query: 311 QRTPRGRLLMPIAWQHLG 328
           QRTPRGR++    + HLG
Sbjct: 345 QRTPRGRVVTEAGYTHLG 362


>gi|108562813|ref|YP_627129.1| Holliday junction DNA helicase RuvB [Helicobacter pylori HPAG1]
 gi|122980533|sp|Q1CUB7|RUVB_HELPH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|107836586|gb|ABF84455.1| Holliday junction DNA helicase [Helicobacter pylori HPAG1]
          Length = 336

 Score =  326 bits (835), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 158/311 (50%), Positives = 227/311 (72%), Gaps = 3/311 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP   E+F GQ +  SNL++ I AAK R E+LDH+LF GPPGLGKT+++ ++A+E+  N
Sbjct: 21  LRPSLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + T+ P+I K+GDLAA+LTNL+ +D+LFIDEIHRLS  +EE+LYPAMEDF+LD+++G G
Sbjct: 81  IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSG 140

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+A+++KI+L  FTLI ATTR G+L+NPL+DRFG+  R+ FY   +L  I+++ A     
Sbjct: 141 PAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAIKLNQ 200

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + +E+A EIA RSRGTPRIA RLL+RVRDFA V ++  +   I   AL  L ++++GFD
Sbjct: 201 DIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMDLNITLHALNELGVNELGFD 260

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           + DL YL+++A N  G PVG+ TI+A + E    IED+IEP+++  G+++RT +GR+  P
Sbjct: 261 EADLAYLSLLA-NAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATP 319

Query: 322 IAWQHLGIDIP 332
               H  + IP
Sbjct: 320 --KTHALLKIP 328


>gi|308184190|ref|YP_003928323.1| Holliday junction DNA helicase RuvB [Helicobacter pylori SJM180]
 gi|308060110|gb|ADO02006.1| Holliday junction DNA helicase RuvB [Helicobacter pylori SJM180]
          Length = 336

 Score =  326 bits (835), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 158/311 (50%), Positives = 227/311 (72%), Gaps = 3/311 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP   E+F GQ +  SNL++ I AAK R E+LDH+LF GPPGLGKT+++ ++A+E+  N
Sbjct: 21  LRPNLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + T+ P+I K+GDLAA+LTNL+ +D+LFIDEIHRLS  +EE+LYPAMEDF+LD+++G G
Sbjct: 81  IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSG 140

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+A+++KI+L  FTLI ATTR G+L+NPL+DRFG+  R+ FY   +L  I+++ A     
Sbjct: 141 PAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKVAVKLNQ 200

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + +E+A EIA RSRGTPRIA RLL+RVRDFA V ++  +   I   AL  L ++++GFD
Sbjct: 201 DIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMDLNITLHALNELGVNELGFD 260

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           + DL YL+++A N  G PVG+ TI+A + E    IED+IEP+++  G+++RT +GR+  P
Sbjct: 261 EADLAYLSLLA-NAQGKPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATP 319

Query: 322 IAWQHLGIDIP 332
               H  + IP
Sbjct: 320 --KTHALLKIP 328


>gi|116617728|ref|YP_818099.1| Holliday junction DNA helicase B [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|122272071|sp|Q03YJ6|RUVB_LEUMM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|116096575|gb|ABJ61726.1| Holliday junction DNA helicase subunit RuvB [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
          Length = 351

 Score =  326 bits (835), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 162/318 (50%), Positives = 216/318 (67%), Gaps = 1/318 (0%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           N  ++ +++SL RP+ L E+ GQ      L V+I AAK R EALDHVL  GPPGLGKTTL
Sbjct: 28  NDEEQRSELSL-RPQFLREYIGQEALKEELNVYISAAKQREEALDHVLLFGPPGLGKTTL 86

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           A ++A E+ VN ++TSGP I K GDL ALL  LE  D+LFIDEIHR+   +EEI+Y AME
Sbjct: 87  AMIIANEMNVNIKTTSGPAIEKPGDLVALLNELEPGDILFIDEIHRIPTNIEEIMYSAME 146

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           D+ +D+MVG+GP+AR V   L  FTLI ATTR G+L+ PL+DRFGI   L +Y  E+L+ 
Sbjct: 147 DYFVDIMVGQGPTARPVHFPLPPFTLIGATTRPGMLSKPLRDRFGIINSLQYYTPEELQQ 206

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           IV R A +    +  E A EI++RSRGTPRIA RLL+RVRDFA+V     I + I    L
Sbjct: 207 IVVRTADIFNAPIKSEGAYEISLRSRGTPRIANRLLKRVRDFAQVEGKDAIDKNIVTIGL 266

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
            +L +D  G D+ D + L  +   + GGPVG+ TI+A + E  + +E ++EPY++Q GF+
Sbjct: 267 DKLRVDNRGLDETDHKLLETMIEYYKGGPVGLNTIAANIGEESETLEAMVEPYLLQIGFL 326

Query: 311 QRTPRGRLLMPIAWQHLG 328
           QRTPRGR++    + HLG
Sbjct: 327 QRTPRGRVVTEAGYTHLG 344


>gi|254779078|ref|YP_003057183.1| Holliday junction DNA helicase RuvB [Helicobacter pylori B38]
 gi|254000989|emb|CAX28933.1| Holliday junction ATP-dependent DNA helicase [Helicobacter pylori
           B38]
          Length = 336

 Score =  326 bits (835), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 158/311 (50%), Positives = 227/311 (72%), Gaps = 3/311 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP   E+F GQ +  SNL++ I AAK R E+LDH+LF GPPGLGKT+++ ++A+E+  N
Sbjct: 21  LRPSLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + T+ P+I K+GDLAA+LTNL+ +D+LFIDEIHRLS  +EE+LYPAMEDF+LD+++G G
Sbjct: 81  IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSG 140

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+A+++KI+L  FTLI ATTR G+L+NPL+DRFG+  R+ FY   +L  I+++ A     
Sbjct: 141 PAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAIKLNQ 200

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + +E+A EIA RSRGTPRIA RLL+RVRDFA V ++  +   I   AL  L ++++GFD
Sbjct: 201 DIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMDLNITLHALNELGVNELGFD 260

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           + DL YL+++A N  G PVG+ TI+A + E    IED+IEP+++  G+++RT +GR+  P
Sbjct: 261 EADLAYLSLLA-NAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATP 319

Query: 322 IAWQHLGIDIP 332
               H  + IP
Sbjct: 320 --KTHALLKIP 328


>gi|19552870|ref|NP_600872.1| Holliday junction DNA helicase RuvB [Corynebacterium glutamicum
           ATCC 13032]
 gi|145295780|ref|YP_001138601.1| Holliday junction DNA helicase RuvB [Corynebacterium glutamicum R]
 gi|172044439|sp|A4QEN3|RUVB_CORGB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|140845700|dbj|BAF54699.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 363

 Score =  326 bits (835), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 160/320 (50%), Positives = 225/320 (70%), Gaps = 1/320 (0%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           + DA+++L RP++L EF GQ +    L + +  AK R    DHVL  GPPGLGKTT+A +
Sbjct: 39  EYDAEVTL-RPKSLTEFIGQPKVRDQLSLVLTGAKNRGVVPDHVLLSGPPGLGKTTMAMI 97

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +A+ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++   EE+LY AMEDF+
Sbjct: 98  IAQELGTSLRMTSGPALERAGDLAAMLSNLMEGDVLFIDEIHRIARPAEEMLYMAMEDFR 157

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           +D++VG+GP A S+ + +  FTL+ ATTR G+LT PL+DRFG   ++ FY++ DL  +V+
Sbjct: 158 IDVIVGKGPGATSIPLEIPPFTLVGATTRSGMLTGPLRDRFGFTAQMEFYDVPDLTKVVK 217

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R AK+  + + ++AA EIA RSRGTPRIA RLLRRVRDFAEV     IT   A+AAL+  
Sbjct: 218 RTAKILDVGIDNDAAVEIASRSRGTPRIANRLLRRVRDFAEVHADGHITMGAANAALIVF 277

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D++G D+LD   L  + R  GGGPVG+ T++  + E    +E++ EPY+++ G I RT
Sbjct: 278 DVDEVGLDRLDRAVLDALIRGHGGGPVGVNTLAVAVGEEPGTVEEVCEPYLVRAGMIART 337

Query: 314 PRGRLLMPIAWQHLGIDIPH 333
            RGR+    AW+HLG++ P 
Sbjct: 338 GRGRVATAAAWRHLGLEPPE 357


>gi|261839236|gb|ACX99001.1| Holliday junction DNA helicase B [Helicobacter pylori 52]
          Length = 336

 Score =  326 bits (835), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 158/311 (50%), Positives = 226/311 (72%), Gaps = 3/311 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP   E+F GQ +  SNL++ I AAK R E+LDH+LF GPPGLGKT+++ ++A+E+  N
Sbjct: 21  LRPNLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + T+ P+I K+GDLAA+LTNL+ +D+LFIDEIHRLS  +EE+LYPAMEDF+LD+++G G
Sbjct: 81  IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSG 140

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+A+++KI+L  FTLI ATTR G+L+NPL+DRFG+  R+ FY   +L  I+ + A     
Sbjct: 141 PAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQFYSPSELALIITKAAAKLNQ 200

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + +E+A EIA RSRGTPRIA RLL+RVRDFA V ++  +   I   AL  L ++++GFD
Sbjct: 201 DIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMDLNITLHALNELGVNELGFD 260

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           + DL YL+++A N  G PVG+ TI+A + E    IED+IEP+++  G+++RT +GR+  P
Sbjct: 261 EADLAYLSLLA-NAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATP 319

Query: 322 IAWQHLGIDIP 332
               H  + IP
Sbjct: 320 --KTHALLKIP 328


>gi|62390541|ref|YP_225943.1| Holliday junction DNA helicase RuvB [Corynebacterium glutamicum
           ATCC 13032]
 gi|41325879|emb|CAF20042.1| Holliday junction resolvasome helicase subunit [Corynebacterium
           glutamicum ATCC 13032]
          Length = 363

 Score =  326 bits (835), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 160/320 (50%), Positives = 225/320 (70%), Gaps = 1/320 (0%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           + DA+++L RP++L EF GQ +    L + +  AK R    DHVL  GPPGLGKTT+A +
Sbjct: 39  EYDAEVTL-RPKSLTEFIGQPKVRDQLSLVLTGAKNRGVVPDHVLLSGPPGLGKTTMAMI 97

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +A+ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++   EE+LY AMEDF+
Sbjct: 98  IAQELGTSLRMTSGPALERAGDLAAMLSNLMEGDVLFIDEIHRIARPAEEMLYMAMEDFR 157

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           +D++VG+GP A S+ + +  FTL+ ATTR G+LT PL+DRFG   ++ FY++ DL  +V+
Sbjct: 158 IDVIVGKGPGATSIPLEIPPFTLVGATTRSGMLTGPLRDRFGFTAQMEFYDVPDLTKVVK 217

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R AK+  + + ++AA EIA RSRGTPRIA RLLRRVRDFAEV     IT   A+AAL+  
Sbjct: 218 RTAKILDVGIDNDAAVEIASRSRGTPRIANRLLRRVRDFAEVHADGHITMGAANAALVVF 277

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D++G D+LD   L  + R  GGGPVG+ T++  + E    +E++ EPY+++ G I RT
Sbjct: 278 DVDEVGLDRLDRAVLDALIRGHGGGPVGVNTLAVAVGEEPGTVEEVCEPYLVRAGMIART 337

Query: 314 PRGRLLMPIAWQHLGIDIPH 333
            RGR+    AW+HLG++ P 
Sbjct: 338 GRGRVATAAAWRHLGLEPPE 357


>gi|317009034|gb|ADU79614.1| Holliday junction DNA helicase RuvB [Helicobacter pylori India7]
          Length = 336

 Score =  326 bits (835), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 157/311 (50%), Positives = 228/311 (73%), Gaps = 3/311 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP   E++ GQ +  SNL++ I AAK R E+LDH+LF GPPGLGKT+++ ++A+E+  N
Sbjct: 21  LRPNLWEDYIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + T+ P+I K+GDLAA+LTNL+ +D+LFIDEIHRLS  +EE+LYPAMEDF+LD+++G G
Sbjct: 81  IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSG 140

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+A+++KI+L  FTLI ATTR G+L+NPL+DRFG+  R+ FY   +L  I+++ A     
Sbjct: 141 PAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAAKLHQ 200

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + +E+A EIA RSRGTPRIA RLL+RVRDFA V ++  +  +I   AL  L ++++GFD
Sbjct: 201 DIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMDLDITLHALKELGVNELGFD 260

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           + DL YL+++A N  G PVG+ TI+A + E    IED+IEP+++  G+++RT +GR+  P
Sbjct: 261 EADLAYLSLLA-NAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATP 319

Query: 322 IAWQHLGIDIP 332
               H  + IP
Sbjct: 320 --KTHALLKIP 328


>gi|284050868|ref|ZP_06381078.1| Holliday junction DNA helicase RuvB [Arthrospira platensis str.
           Paraca]
 gi|291567135|dbj|BAI89407.1| Holliday junction DNA helicase RuvB [Arthrospira platensis NIES-39]
          Length = 369

 Score =  326 bits (835), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 164/313 (52%), Positives = 218/313 (69%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L ++ GQ +    L++ I AAK+R E LDH+L  GPPGLGKTT+A ++A E+GV 
Sbjct: 51  IRPQQLADYIGQRDLKQVLEIAIAAAKSRQEPLDHLLLYGPPGLGKTTMALILATEMGVK 110

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + T+ P + K  D+A LL N +  ++LFIDEIHRLS + EEILYPAMED +LD+ +G+G
Sbjct: 111 CQITTAPSLEKPRDIAGLLVNQKPGEILFIDEIHRLSKMAEEILYPAMEDSRLDITIGQG 170

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            SAR+  I L++FT++ ATTR+G LT+PL+DRFG+  RL FYE+++L  IV R AKL   
Sbjct: 171 RSARTRSIPLNKFTIVGATTRIGALTSPLRDRFGLIQRLRFYEVDELAQIVNRTAKLLTT 230

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T E A EIA RSRGTPRIA RLLRRVRD+ EV  +  IT EIA  AL    +D +G D
Sbjct: 231 PITPEGALEIARRSRGTPRIANRLLRRVRDYLEVKASGAITGEIAAIALELFNVDPLGLD 290

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             D   L +I  NF GGPVG+ET++A   E    +E++ EPY++Q GF+QRT RGR+  P
Sbjct: 291 WTDQHLLRIIIENFQGGPVGLETLAAASGEDAQTLEEVQEPYLMQIGFLQRTHRGRIATP 350

Query: 322 IAWQHLGIDIPHR 334
            AWQHLG   P +
Sbjct: 351 KAWQHLGYQPPEK 363


>gi|217033319|ref|ZP_03438750.1| hypothetical protein HP9810_9g72 [Helicobacter pylori 98-10]
 gi|216944260|gb|EEC23685.1| hypothetical protein HP9810_9g72 [Helicobacter pylori 98-10]
 gi|261837821|gb|ACX97587.1| Holliday junction DNA helicase [Helicobacter pylori 51]
 gi|317179218|dbj|BAJ57006.1| Holliday junction DNA helicase B [Helicobacter pylori F30]
 gi|332673235|gb|AEE70052.1| crossover junction ATP-dependent DNA helicase RuvB [Helicobacter
           pylori 83]
          Length = 336

 Score =  326 bits (835), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 157/311 (50%), Positives = 227/311 (72%), Gaps = 3/311 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP   E++ GQ +  SNL++ I AAK R E+LDH+LF GPPGLGKT+++ ++A+E+  N
Sbjct: 21  LRPNLWEDYIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + T+ P+I K+GDLAA+LTNL+ +D+LFIDEIHRLS  +EE+LYPAMEDF+LD+++G G
Sbjct: 81  IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSG 140

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+A+++KI+L  FTLI ATTR G+L+NPL+DRFG+  R+ FY   +L  I+++ A     
Sbjct: 141 PAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAAKLNQ 200

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + +E+A EIA RSRGTPRIA RLL+RVRDFA V ++  +   I   AL  L ++++GFD
Sbjct: 201 DIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMDLNITLHALNELGVNELGFD 260

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           + DL YL+++A N  G PVG+ TI+A + E    IED+IEP+++  G+++RT +GR+  P
Sbjct: 261 EADLAYLSLLA-NAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATP 319

Query: 322 IAWQHLGIDIP 332
               H  + IP
Sbjct: 320 --KTHALLKIP 328


>gi|317180716|dbj|BAJ58502.1| Holliday junction DNA helicase B [Helicobacter pylori F32]
          Length = 336

 Score =  325 bits (834), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 157/311 (50%), Positives = 227/311 (72%), Gaps = 3/311 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP   E++ GQ +  SNL++ I AAK R E+LDH+LF GPPGLGKT+++ ++A+E+  N
Sbjct: 21  LRPSLWEDYIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + T+ P+I K+GDLAA+LTNL+ +D+LFIDEIHRLS  +EE+LYPAMEDF+LD+++G G
Sbjct: 81  IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSG 140

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+A+++KI+L  FTLI ATTR G+L+NPL+DRFG+  R+ FY   +L  I+++ A     
Sbjct: 141 PAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAAKLNQ 200

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + +E+A EIA RSRGTPRIA RLL+RVRDFA V ++  +   I   AL  L ++++GFD
Sbjct: 201 DIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMDLNITLHALNELGVNELGFD 260

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           + DL YL+++A N  G PVG+ TI+A + E    IED+IEP+++  G+++RT +GR+  P
Sbjct: 261 EADLAYLSLLA-NAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATP 319

Query: 322 IAWQHLGIDIP 332
               H  + IP
Sbjct: 320 --KTHALLKIP 328


>gi|207108173|ref|ZP_03242335.1| Holliday junction DNA helicase B [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 320

 Score =  325 bits (834), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 158/311 (50%), Positives = 227/311 (72%), Gaps = 3/311 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP   E+F GQ +  SNL++ I AAK R E+LDH+LF GPPGLGKT+++ ++A+E+  N
Sbjct: 11  LRPNLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN 70

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + T+ P+I K+GDLAA+LTNL+ +D+LFIDEIHRLS  +EE+LYPAMEDF+LD+++G G
Sbjct: 71  IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSG 130

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+A+++KI+L  FTLI ATTR G+L+NPL+DRFG+  R+ FY   +L  I+++ A     
Sbjct: 131 PAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAIKLNQ 190

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + +E+A EIA RSRGTPRIA RLL+RVRDFA V ++  +   I   AL  L ++++GFD
Sbjct: 191 DIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMDLNITLHALNELGVNELGFD 250

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           + DL YL+++A N  G PVG+ TI+A + E    IED+IEP+++  G+++RT +GR+  P
Sbjct: 251 EADLAYLSLLA-NAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATP 309

Query: 322 IAWQHLGIDIP 332
               H  + IP
Sbjct: 310 --KTHALLKIP 318


>gi|108799234|ref|YP_639431.1| Holliday junction DNA helicase RuvB [Mycobacterium sp. MCS]
 gi|119868350|ref|YP_938302.1| Holliday junction DNA helicase B [Mycobacterium sp. KMS]
 gi|126434892|ref|YP_001070583.1| Holliday junction DNA helicase RuvB [Mycobacterium sp. JLS]
 gi|123369346|sp|Q1B9Q9|RUVB_MYCSS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|171769149|sp|A1UFA4|RUVB_MYCSK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|171855233|sp|A3PYW5|RUVB_MYCSJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|108769653|gb|ABG08375.1| Holliday junction DNA helicase subunit RuvB [Mycobacterium sp. MCS]
 gi|119694439|gb|ABL91512.1| Holliday junction DNA helicase subunit RuvB [Mycobacterium sp. KMS]
 gi|126234692|gb|ABN98092.1| Holliday junction DNA helicase RuvB [Mycobacterium sp. JLS]
          Length = 357

 Score =  325 bits (834), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 165/330 (50%), Positives = 227/330 (68%), Gaps = 1/330 (0%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           DR+   +  V + D D SL RPR+L EF GQ      L++ +E AK R    DH+L  GP
Sbjct: 16  DRDVSPALTVGEGDIDASL-RPRSLGEFIGQPRVREQLQLVLEGAKNRGGTPDHILLSGP 74

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKT+LA ++A EL  + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++   E
Sbjct: 75  PGLGKTSLAMIIAAELSSSLRVTSGPALERAGDLAAMLSNLVEGDVLFIDEIHRIARPAE 134

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LY AMEDF++D++VG+GP A S+ + ++ FTL+ ATTR G LT PL+DRFG    ++F
Sbjct: 135 EMLYLAMEDFRVDVVVGKGPGATSIPLEVAPFTLVGATTRSGALTGPLRDRFGFTAHMDF 194

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           YE  +L+ ++ R A + G+ +  EA  EIA RSRGTPRIA RLLRRVRD+AEV     IT
Sbjct: 195 YEPAELERVLARSAGILGIHLGTEAGAEIARRSRGTPRIANRLLRRVRDYAEVRADGVIT 254

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           R+IA AAL    +D++G D+LD   L+ + R+FGGGPVG+ T++  + E    +E++ EP
Sbjct: 255 RDIAKAALEVYDVDELGLDRLDRAVLSALIRSFGGGPVGVSTLAVAVGEEPTTVEEVCEP 314

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++++ G I RTPRGR+    AW HLG+  P
Sbjct: 315 FLVRAGMIARTPRGRVATASAWTHLGLTPP 344


>gi|22257045|sp|Q9AE09|RUVB_CORGL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|21324429|dbj|BAB99053.1| Holliday junction resolvasome helicase subunit [Corynebacterium
           glutamicum ATCC 13032]
          Length = 360

 Score =  325 bits (834), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 160/320 (50%), Positives = 225/320 (70%), Gaps = 1/320 (0%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           + DA+++L RP++L EF GQ +    L + +  AK R    DHVL  GPPGLGKTT+A +
Sbjct: 36  EYDAEVTL-RPKSLTEFIGQPKVRDQLSLVLTGAKNRGVVPDHVLLSGPPGLGKTTMAMI 94

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +A+ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++   EE+LY AMEDF+
Sbjct: 95  IAQELGTSLRMTSGPALERAGDLAAMLSNLMEGDVLFIDEIHRIARPAEEMLYMAMEDFR 154

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           +D++VG+GP A S+ + +  FTL+ ATTR G+LT PL+DRFG   ++ FY++ DL  +V+
Sbjct: 155 IDVIVGKGPGATSIPLEIPPFTLVGATTRSGMLTGPLRDRFGFTAQMEFYDVPDLTKVVK 214

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R AK+  + + ++AA EIA RSRGTPRIA RLLRRVRDFAEV     IT   A+AAL+  
Sbjct: 215 RTAKILDVGIDNDAAVEIASRSRGTPRIANRLLRRVRDFAEVHADGHITMGAANAALIVF 274

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D++G D+LD   L  + R  GGGPVG+ T++  + E    +E++ EPY+++ G I RT
Sbjct: 275 DVDEVGLDRLDRAVLDALIRGHGGGPVGVNTLAVAVGEEPGTVEEVCEPYLVRAGMIART 334

Query: 314 PRGRLLMPIAWQHLGIDIPH 333
            RGR+    AW+HLG++ P 
Sbjct: 335 GRGRVATAAAWRHLGLEPPE 354


>gi|21674448|ref|NP_662513.1| Holliday junction DNA helicase B [Chlorobium tepidum TLS]
 gi|25453272|sp|Q8KC00|RUVB_CHLTE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|21647634|gb|AAM72855.1| Holliday junction DNA helicase RuvB [Chlorobium tepidum TLS]
          Length = 344

 Score =  325 bits (834), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 161/311 (51%), Positives = 224/311 (72%), Gaps = 3/311 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ + +F GQ +   NLKVFI AA+ R EALDHVL  GPPGLGKTTLA ++A E+G +
Sbjct: 21  IRPQKMGDFAGQKKLIDNLKVFITAARKRGEALDHVLLSGPPGLGKTTLAHIIAAEMGGS 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGP+I KAG+LA LLT+++  D+LFIDEIHRL+  VEE LY AMED+++D+++  G
Sbjct: 81  IKITSGPLIDKAGNLAGLLTSMKKGDILFIDEIHRLAPAVEEYLYSAMEDYRIDILLDSG 140

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P++R+V++ L  FTL+ ATTR GLLT+PL+ RFGI  RL++Y  E L++I+ R A +  +
Sbjct: 141 PASRAVQLKLEPFTLVGATTRAGLLTSPLRARFGINSRLDYYNPELLQSIIIRAAGILNI 200

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + ++AA EIA RSRGTPRIA RLLRR RDFA+VA   +I+  +A   L  L ID+ G D
Sbjct: 201 GIDEDAAMEIARRSRGTPRIANRLLRRARDFAQVAGDASISLAVARRTLESLEIDEGGLD 260

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  I R F GGPVG+ +++  + E +D IE++ EPY+IQ G++ RTPRGR+   
Sbjct: 261 DMDKKILEAIVRKFNGGPVGLASLAVSVGEEQDTIEEVYEPYLIQMGYLSRTPRGRVATR 320

Query: 322 IA---WQHLGI 329
           +A   + H GI
Sbjct: 321 LAMSRFAHPGI 331


>gi|154174013|ref|YP_001408691.1| Holliday junction DNA helicase RuvB [Campylobacter curvus 525.92]
 gi|166231476|sp|A7GZP9|RUVB_CAMC5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|112802406|gb|EAT99750.1| holliday junction DNA helicase RuvB [Campylobacter curvus 525.92]
          Length = 338

 Score =  325 bits (834), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 161/330 (48%), Positives = 231/330 (70%), Gaps = 2/330 (0%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MDR   + +   + + ++SL RP + +++ GQ +   NL VFI+AAK R E LDHVLF G
Sbjct: 1   MDRIVEIEKVSFESEFEVSL-RPSSFDDYIGQEKIKQNLDVFIKAAKKRGECLDHVLFYG 59

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+ V+ + T+ P+I K+GDLAA+LTNL++ DVLFIDEIHRLS  +
Sbjct: 60  PPGLGKTTLAHIIANEMAVSIKMTAAPMIEKSGDLAAILTNLQEGDVLFIDEIHRLSPAI 119

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMEDF+LD+++G GP+A+++KI+L +FTLI ATTR G+++ PL+DRFG+  RL 
Sbjct: 120 EEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMISAPLRDRFGMDFRLQ 179

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY   +L  I+Q  +   G      AA EIA R+R TPRIA RLL+R+RDFAEV     I
Sbjct: 180 FYSTAELSRIIQIASVKLGKECDKAAALEIAKRARATPRIALRLLKRIRDFAEVNDEAMI 239

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           + E A   L  L ++ +GFD++D++YL ++  +    P+G+ TI+A LSE    +ED+IE
Sbjct: 240 SHERAKEGLNALGVNSLGFDEMDIKYLEILL-DAKRRPLGLSTIAAALSEDEGTVEDVIE 298

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           PY++  GFI+RT +GR+     ++   I +
Sbjct: 299 PYLLANGFIERTAKGRIASEKCFETFKIKL 328


>gi|281355534|ref|ZP_06242028.1| Holliday junction DNA helicase RuvB [Victivallis vadensis ATCC
           BAA-548]
 gi|281318414|gb|EFB02434.1| Holliday junction DNA helicase RuvB [Victivallis vadensis ATCC
           BAA-548]
          Length = 341

 Score =  325 bits (833), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 164/326 (50%), Positives = 227/326 (69%), Gaps = 1/326 (0%)

Query: 5   EGLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E  ++  ++++D A  + LRP    +F GQ      L++F+ AAKAR EALDH+L  GPP
Sbjct: 3   ERFITSTLNKKDPARETSLRPPKFADFPGQDRVKEQLELFVHAAKAREEALDHILLCGPP 62

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++A E G N +S+SGP I K GDLA LLT LE  DVLFIDEIHRL+  VEE
Sbjct: 63  GLGKTTLAYIIANERGTNLKSSSGPAIEKPGDLAGLLTALEPGDVLFIDEIHRLNSTVEE 122

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
            LY AMEDF +D+M+ +G  ARSV++ +  FTLI ATTR G+++ PL+ RFG+ IRL++Y
Sbjct: 123 YLYSAMEDFFIDIMIEQGAGARSVRLTVPHFTLIGATTRQGMISAPLRSRFGLNIRLDYY 182

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           + E L  I++R A +  + + D+ A +IA R RGTPRIA  LLRR RD+A+V     IT 
Sbjct: 183 DAESLSRILKRSAGILDIDIDDDGARQIAGRCRGTPRIANNLLRRARDYAQVRADSVITG 242

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           ++A+ AL  L ID  G D++D+R L  I  +FGGGPVG++ I+  + E  D+IED+ EP+
Sbjct: 243 KVAEEALEMLQIDHDGLDEMDIRILETIIASFGGGPVGLKNIAVSIGEEEDSIEDVYEPF 302

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGI 329
           +IQ+G++ RTP+GR+  P AW  +G+
Sbjct: 303 LIQKGYLVRTPKGRVATPKAWDKVGM 328


>gi|86606501|ref|YP_475264.1| Holliday junction DNA helicase RuvB [Synechococcus sp. JA-3-3Ab]
 gi|97189888|sp|Q2JTJ1|RUVB2_SYNJA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB 2
 gi|86555043|gb|ABD00001.1| Holliday junction DNA helicase RuvB [Synechococcus sp. JA-3-3Ab]
          Length = 370

 Score =  325 bits (833), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 175/324 (54%), Positives = 219/324 (67%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           EGLL       +A    LRPRTL E+ GQ E    L + I AA+AR E LDH+LF GPPG
Sbjct: 36  EGLLQPQAHPSEAQEESLRPRTLAEYIGQTELKEVLSIAIAAARARGEPLDHLLFYGPPG 95

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTT+A V+A E+G  F  T+ P +    D+A  L  L+  DVLFIDEIHRL  + EE+
Sbjct: 96  LGKTTVAAVLAAEMGSRFYMTTAPALESPRDIAGYLVRLKQGDVLFIDEIHRLPKVTEEL 155

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPAMEDF+LD+ VG+G SAR   I L RFTLI ATTR+G LT+PL+DRFG   RL FYE
Sbjct: 156 LYPAMEDFRLDITVGKGRSARITSIPLERFTLIGATTRIGALTSPLRDRFGQVQRLRFYE 215

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
             +L  IV R A+L   ++    A EIA RSRGTPRIA RLL+RVRD+A+V     I+RE
Sbjct: 216 PHELAEIVLRSARLLNTSIDRAGAEEIARRSRGTPRIANRLLKRVRDYAQVRGDGHISRE 275

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +A AAL    +D MG D  D + LT++   FGGGPVG+ET++A   E    IE++ EPY+
Sbjct: 276 VAAAALELFQVDPMGLDWTDRKLLTVLVEQFGGGPVGLETMAAVTGEDPQTIEEVYEPYL 335

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLG 328
           +Q G++QRTPRGR++ P A QHLG
Sbjct: 336 LQIGYLQRTPRGRVVTPAALQHLG 359


>gi|305681162|ref|ZP_07403969.1| Holliday junction DNA helicase RuvB [Corynebacterium matruchotii
           ATCC 14266]
 gi|305659367|gb|EFM48867.1| Holliday junction DNA helicase RuvB [Corynebacterium matruchotii
           ATCC 14266]
          Length = 365

 Score =  325 bits (833), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 160/330 (48%), Positives = 223/330 (67%), Gaps = 1/330 (0%)

Query: 4   REGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           R G ++ +    + DI + LRPR+L EF GQ +    L + +  AK R    DHVL  GP
Sbjct: 30  RRGTINPHALNTETDIETTLRPRSLAEFIGQPKVRDQLNLVLTGAKNRNVTPDHVLLSGP 89

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTT+A ++A E+G + R TSGP + + GDLAA+L+NL + DVLFIDEIHR++   E
Sbjct: 90  PGLGKTTMAMIIAYEMGTSLRMTSGPALERTGDLAAMLSNLMEGDVLFIDEIHRMARPAE 149

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LY AMEDF++D++VG+GP A S+ + L+ FTL+ ATTR G+LT PL+DRFG   ++ F
Sbjct: 150 EMLYMAMEDFRIDVIVGKGPGATSIPLELAPFTLVGATTRSGMLTGPLRDRFGFTAQMEF 209

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y+  DL  +V R AK+ G+ +  +AA EIA RSRGTPRIA RLLRRVRD+A+V     I 
Sbjct: 210 YDTPDLTQVVSRAAKIIGVGIDPDAAVEIASRSRGTPRIANRLLRRVRDYADVHGTGHID 269

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            +   AAL+   +D MG D+LD   LT + +  GGGPVG+ T++  + E    +E++ EP
Sbjct: 270 LQAVRAALIVFDVDAMGLDRLDRAVLTALIKGHGGGPVGVSTLAIAVGEEASTVEEVCEP 329

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           Y+++ G I RT RGR+    AW+HLG++ P
Sbjct: 330 YLVRAGMITRTGRGRVATAAAWRHLGLEPP 359


>gi|225021303|ref|ZP_03710495.1| hypothetical protein CORMATOL_01322 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946036|gb|EEG27245.1| hypothetical protein CORMATOL_01322 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 365

 Score =  325 bits (833), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 160/330 (48%), Positives = 223/330 (67%), Gaps = 1/330 (0%)

Query: 4   REGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           R G ++ +    + DI + LRPR+L EF GQ +    L + +  AK R    DHVL  GP
Sbjct: 30  RRGTINPHALNTETDIETTLRPRSLAEFIGQPKVRDQLNLVLTGAKNRNVTPDHVLLSGP 89

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTT+A ++A E+G + R TSGP + + GDLAA+L+NL + DVLFIDEIHR++   E
Sbjct: 90  PGLGKTTMAMIIAYEMGTSLRMTSGPALERTGDLAAMLSNLMEGDVLFIDEIHRMARPAE 149

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LY AMEDF++D++VG+GP A S+ + L+ FTL+ ATTR G+LT PL+DRFG   ++ F
Sbjct: 150 EMLYMAMEDFRIDVIVGKGPGATSIPLELAPFTLVGATTRSGMLTGPLRDRFGFTAQMEF 209

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y+  DL  +V R AK+ G+ +  +AA EIA RSRGTPRIA RLLRRVRD+A+V     I 
Sbjct: 210 YDTPDLTQVVSRAAKIIGVGIDPDAAVEIASRSRGTPRIANRLLRRVRDYADVHGTGHID 269

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            +   AAL+   +D MG D+LD   LT + +  GGGPVG+ T++  + E    +E++ EP
Sbjct: 270 LQAVRAALIVFDVDAMGLDRLDRAVLTALIKGHGGGPVGVSTLAIAVGEEASTVEEVCEP 329

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           Y+++ G I RT RGR+    AW+HLG++ P
Sbjct: 330 YLVRAGMITRTGRGRVATAAAWRHLGLEPP 359


>gi|86740077|ref|YP_480477.1| Holliday junction DNA helicase RuvB [Frankia sp. CcI3]
 gi|123751318|sp|Q2JD94|RUVB_FRASC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|86566939|gb|ABD10748.1| Holliday junction DNA helicase subunit RuvB [Frankia sp. CcI3]
          Length = 348

 Score =  325 bits (833), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 166/330 (50%), Positives = 229/330 (69%), Gaps = 1/330 (0%)

Query: 2   MDREGLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M  +GL+S   S E+ A  + LRPRTL EF GQ +    L + +E A+AR    DHVL  
Sbjct: 1   MSDDGLVSAAASPEERAFEAGLRPRTLAEFVGQRKVREQLTIMLEGARARGRPPDHVLLS 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKT+LA ++A+EL V  R TSGP I +AGDL A+LT L   +VLF+DEIHR++  
Sbjct: 61  GPPGLGKTSLAMIMAQELEVPLRMTSGPAIERAGDLVAILTALSPGEVLFLDEIHRIARP 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            EE+LY AMEDF++D+++G+GP A ++ +++S FTL+ ATTR GLLT PL+DRFG    L
Sbjct: 121 AEELLYAAMEDFRVDVILGKGPGATAIPLDVSPFTLVGATTRSGLLTGPLRDRFGFTAHL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           +FY+ ++L  ++ R A L G+ +T E A E+A RSRGTPRIA RLLRRVRD+AEV     
Sbjct: 181 DFYDADELARVLTRSAGLLGVTLTAEGAAEVAGRSRGTPRIANRLLRRVRDYAEVRADGV 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +TREIA AAL    +D +G D+LD   L  +   FGGGPVG+ T++  + E  + +ED+ 
Sbjct: 241 VTREIAQAALRIYDVDGLGLDRLDRAVLEALVTRFGGGPVGLTTLAVSVGEEPETVEDVA 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           EP++++ G + RT RGR+  P A++HLG+D
Sbjct: 301 EPFLLRAGLLIRTARGRMATPAAFEHLGLD 330


>gi|269926044|ref|YP_003322667.1| Holliday junction DNA helicase RuvB [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269789704|gb|ACZ41845.1| Holliday junction DNA helicase RuvB [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 354

 Score =  325 bits (832), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 165/320 (51%), Positives = 223/320 (69%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           ++D   + +RP+ L+E+ GQ +    +KV IEAAKAR EA+DH+L  GPPGLGKTTLA +
Sbjct: 13  EDDIQEATVRPKRLDEYIGQDQIKDRVKVIIEAAKARGEAIDHILLYGPPGLGKTTLATI 72

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +A E+GV   STSGP I + GD+A++L+ L+  +VLFIDEIHRL   VEE+LY AMEDF+
Sbjct: 73  IANEMGVKIHSTSGPAIERPGDVASILSKLQPFEVLFIDEIHRLPRPVEEMLYSAMEDFK 132

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           +D + G+GP+A +V + L  FTLI ATTR+ LL++PL+ RFG   RL + +I+ +  IV+
Sbjct: 133 VDFVYGKGPNAGTVTLPLPPFTLIGATTRLALLSSPLRGRFGDIFRLEYQDIDSMAAIVK 192

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A +  + +TDE A EIA RSRGTPR+A RLLRRVRD+A+V     I  E A  AL   
Sbjct: 193 RAANILKVGITDEGALEIARRSRGTPRVAIRLLRRVRDYAQVRADHLIDHETACKALDIQ 252

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D++G D++D R L  I   F GGPVG+ET++A +SE  D I D+ EPY++  GFIQRT
Sbjct: 253 GVDELGLDEVDRRILLAIIEKFDGGPVGLETLAASISEEPDTIMDVYEPYLLILGFIQRT 312

Query: 314 PRGRLLMPIAWQHLGIDIPH 333
           PRGR+    A+ HL I  P 
Sbjct: 313 PRGRVATRRAYDHLSIPYPE 332


>gi|213966114|ref|ZP_03394301.1| holliday junction DNA helicase RuvB [Corynebacterium amycolatum
           SK46]
 gi|213951212|gb|EEB62607.1| holliday junction DNA helicase RuvB [Corynebacterium amycolatum
           SK46]
          Length = 370

 Score =  325 bits (832), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 160/323 (49%), Positives = 224/323 (69%), Gaps = 1/323 (0%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
            V + DA+ S LRP++L EF GQ +    L + +  A+ R    DH+L  GPPGLGKTT+
Sbjct: 44  QVEEVDAE-SNLRPKSLGEFIGQPKVREQLDLVLSGARGRNVTPDHILLSGPPGLGKTTM 102

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           A ++A+E+G + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++  VEE+LY AME
Sbjct: 103 AMIIAQEMGSSLRMTSGPALIRAGDLAAMLSNLLEGDVLFIDEIHRIARPVEEMLYMAME 162

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           DF++D++VG+GP A S+ + +  FTL+ ATTR G+LT PL+DRFG   ++ FYE+EDL  
Sbjct: 163 DFRIDVIVGKGPGATSIPLEIPPFTLVGATTRSGMLTGPLRDRFGFTAQMEFYEVEDLTK 222

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           +V R A + G+ ++ EAA EIA RSRGTPRIA RLLRRVRDFA+V     I    A AAL
Sbjct: 223 VVTRAAGILGVDISPEAAVEIASRSRGTPRIANRLLRRVRDFADVHSGGVIDLGAAKAAL 282

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
           +   +D++G D+LD   LT + +  GGGPVG+ +++  + E    +E++ EPY+++ G I
Sbjct: 283 IVFDVDELGLDRLDRAVLTALVKGHGGGPVGVNSLALAVGEEPSTVEEVCEPYLVRAGMI 342

Query: 311 QRTPRGRLLMPIAWQHLGIDIPH 333
            RT RGR+    AW+HLG+  P 
Sbjct: 343 ARTSRGRVATARAWRHLGLQPPE 365


>gi|25028329|ref|NP_738383.1| Holliday junction DNA helicase B [Corynebacterium efficiens YS-314]
 gi|44888502|sp|Q8FPK5|RUVB_COREF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|23493614|dbj|BAC18583.1| holliday junction DNA-helicase RuvB [Corynebacterium efficiens
           YS-314]
          Length = 360

 Score =  325 bits (832), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 160/324 (49%), Positives = 225/324 (69%), Gaps = 1/324 (0%)

Query: 11  NVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           N+  +D +  + LRPR+L+EF GQ +    L + +  AK R    DHVL  GPPGLGKTT
Sbjct: 31  NIQPDDVEAEVTLRPRSLDEFIGQPKVRDQLSLVLTGAKKRGVVPDHVLLSGPPGLGKTT 90

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           +A ++A+ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++   EE+LY AM
Sbjct: 91  MAMIIAQELGTSLRMTSGPALERAGDLAAMLSNLMEGDVLFIDEIHRIARPAEEMLYMAM 150

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           EDF++D++VG+GP A S+ + +  FTL+ ATTR G+LT PL+DRFG   ++ FY++ DL 
Sbjct: 151 EDFRIDVIVGKGPGATSIPLEIPPFTLVGATTRSGMLTGPLRDRFGFTAQMEFYDVADLT 210

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            +V+R A++  + +  +AA EIA RSRGTPRIA RLLRRVRDFAEV     IT   A+AA
Sbjct: 211 RVVKRTARILEVGIDADAAVEIASRSRGTPRIANRLLRRVRDFAEVHADGHITLGAANAA 270

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           L+   +D++G D+LD   L  + R  GGGPVG+ T++  + E    +E++ EPY+++ G 
Sbjct: 271 LIVFDVDELGLDRLDRAVLDALVRGHGGGPVGVNTLAVAVGEEPATVEEVCEPYLVRAGM 330

Query: 310 IQRTPRGRLLMPIAWQHLGIDIPH 333
           I RT RGR+    AW+HLG++ P 
Sbjct: 331 IARTGRGRVATAAAWRHLGLEPPE 354


>gi|259507384|ref|ZP_05750284.1| Holliday junction DNA helicase RuvB [Corynebacterium efficiens
           YS-314]
 gi|259165009|gb|EEW49563.1| Holliday junction DNA helicase RuvB [Corynebacterium efficiens
           YS-314]
          Length = 363

 Score =  325 bits (832), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 160/324 (49%), Positives = 225/324 (69%), Gaps = 1/324 (0%)

Query: 11  NVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           N+  +D +  + LRPR+L+EF GQ +    L + +  AK R    DHVL  GPPGLGKTT
Sbjct: 34  NIQPDDVEAEVTLRPRSLDEFIGQPKVRDQLSLVLTGAKKRGVVPDHVLLSGPPGLGKTT 93

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           +A ++A+ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++   EE+LY AM
Sbjct: 94  MAMIIAQELGTSLRMTSGPALERAGDLAAMLSNLMEGDVLFIDEIHRIARPAEEMLYMAM 153

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           EDF++D++VG+GP A S+ + +  FTL+ ATTR G+LT PL+DRFG   ++ FY++ DL 
Sbjct: 154 EDFRIDVIVGKGPGATSIPLEIPPFTLVGATTRSGMLTGPLRDRFGFTAQMEFYDVADLT 213

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            +V+R A++  + +  +AA EIA RSRGTPRIA RLLRRVRDFAEV     IT   A+AA
Sbjct: 214 RVVKRTARILEVGIDADAAVEIASRSRGTPRIANRLLRRVRDFAEVHADGHITLGAANAA 273

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           L+   +D++G D+LD   L  + R  GGGPVG+ T++  + E    +E++ EPY+++ G 
Sbjct: 274 LIVFDVDELGLDRLDRAVLDALVRGHGGGPVGVNTLAVAVGEEPATVEEVCEPYLVRAGM 333

Query: 310 IQRTPRGRLLMPIAWQHLGIDIPH 333
           I RT RGR+    AW+HLG++ P 
Sbjct: 334 IARTGRGRVATAAAWRHLGLEPPE 357


>gi|317012227|gb|ADU82835.1| Holliday junction DNA helicase RuvB [Helicobacter pylori
           Lithuania75]
          Length = 336

 Score =  324 bits (831), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 157/311 (50%), Positives = 227/311 (72%), Gaps = 3/311 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP   E+F GQ +  SNL++ I AAK R E+LDH+LF GPPGLGKT+++ ++A+E+  N
Sbjct: 21  LRPSLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + T+ P+I K+GDLAA+LTNL+ +D+LFIDEIHRLS  +EE+LYPAMEDF+LD+++G G
Sbjct: 81  IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSG 140

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+A+++KI+L  FTLI ATTR G+L+NPL+DRFG+  R+ FY   +L  I+++ A     
Sbjct: 141 PAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAIKLNQ 200

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + +E+A EIA RSRGTPRIA RLL+RV DFA V ++  +   I   AL  L ++++GFD
Sbjct: 201 DIKEESADEIAKRSRGTPRIALRLLKRVCDFALVKNSSLMDLNITLHALNELGVNELGFD 260

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           ++DL YL+++A N  G PVG+ TI+A + E    IED+IEP+++  G+++RT +GR+  P
Sbjct: 261 EVDLAYLSLLA-NAQGKPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATP 319

Query: 322 IAWQHLGIDIP 332
               H  + IP
Sbjct: 320 --KTHALLKIP 328


>gi|162447236|ref|YP_001620368.1| Holliday junction DNA helicase RuvB [Acholeplasma laidlawii PG-8A]
 gi|189045779|sp|A9NF62|RUVB_ACHLI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|161985343|gb|ABX80992.1| holliday junction DNA helicase RuvB [Acholeplasma laidlawii PG-8A]
          Length = 337

 Score =  324 bits (831), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 161/328 (49%), Positives = 229/328 (69%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M  E  + R+++ ++ D  +LRP+TL ++ GQ +    L ++I+AA  R E+LDHVL  G
Sbjct: 1   MSEEKSVLRDLNLKNDDELMLRPQTLNQYIGQDDIKEMLSIYIQAALKREESLDHVLLYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
            PGLGKTTLAQ++A ELGV+ + TSGP I K GDL ALL++L   DVLFIDEIHR+   V
Sbjct: 61  APGLGKTTLAQIIANELGVDIKITSGPAIEKTGDLVALLSSLSPGDVLFIDEIHRIPRFV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMED+ LD+++ +   +RS++I L  FTLI ATTR G L++PL++RFG   RL+
Sbjct: 121 EEVLYSAMEDYTLDIVLDKERDSRSIRIELPPFTLIGATTRFGDLSHPLRERFGAVFRLS 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y++E++K IV+R +K+    + ++A  E++ RSRGTPRIA RL RRVRDFAE+     I
Sbjct: 181 YYKLEEIKQIVRRTSKVYQNEIDEKAVDELSKRSRGTPRIANRLFRRVRDFAEIMTDAVI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T +I   AL +L ID  G D  D  YL  I   F GGPVG+E++++ + E    IED+ E
Sbjct: 241 TLDITQLALTKLGIDHKGLDASDYLYLRGIVERFNGGPVGLESLASTIGEEPGTIEDVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           PY++Q+G+I+RTPRGR+   +A+  LG+
Sbjct: 301 PYLLQEGYIKRTPRGRVATELAYNLLGV 328


>gi|24987361|pdb|1IXR|C Chain C, Ruva-Ruvb Complex
          Length = 312

 Score =  324 bits (831), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 172/307 (56%), Positives = 224/307 (72%), Gaps = 1/307 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+TL+E+ GQ      L+V++EAAKAR E L+H+L  GPPGLGKTTLA V+A ELGVN
Sbjct: 6   LRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVN 65

Query: 82  FRSTSGPVIAKAGDLAALLTN-LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
            R TSGP I K GDLAA+L N LE+ D+LFIDEIHRLS   EE LYPAMEDF +D+++G+
Sbjct: 66  LRVTSGPAIEKPGDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQ 125

Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
           GP+AR++++ L RFTLI ATTR GL+T PL  RFGI   L +Y  E+L   V R A+L G
Sbjct: 126 GPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLG 185

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGF 260
           + +T+EAA EI  RSRGT R+A RL RRVRDFA+VA  + ITRE A  AL  L +D++G 
Sbjct: 186 VRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAALGLDELGL 245

Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320
           ++ D   L ++   FGGGPVG+ T++  LSE    +E++ EPY+I+QG ++RTPRGR+  
Sbjct: 246 EKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRTPRGRVAT 305

Query: 321 PIAWQHL 327
            +A +HL
Sbjct: 306 ELARRHL 312


>gi|297622864|ref|YP_003704298.1| Holliday junction DNA helicase RuvB [Truepera radiovictrix DSM
           17093]
 gi|297164044|gb|ADI13755.1| Holliday junction DNA helicase RuvB [Truepera radiovictrix DSM
           17093]
          Length = 343

 Score =  324 bits (830), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 164/308 (53%), Positives = 217/308 (70%), Gaps = 1/308 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPR L ++ GQ +    L V++EAAK+R EALDHVL  GPPGLGKTTLA +VA ELGVN
Sbjct: 7   LRPRALADYVGQTKLKEKLAVYLEAAKSRGEALDHVLLYGPPGLGKTTLAHIVAYELGVN 66

Query: 82  FRSTSGPVIAKAGDLAALLTN-LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
            R TSGP I K GDLAA+LTN L++ DVLFIDEIHRL  + EE LYPAMEDF++D+++G+
Sbjct: 67  IRVTSGPAIEKPGDLAAILTNSLDEGDVLFIDEIHRLGRVAEEHLYPAMEDFKVDIILGQ 126

Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
           GP+AR+++++L RFTLI ATTR GL+T P++ RFGI   L +Y   +L   V R A+L G
Sbjct: 127 GPAARTIRLDLPRFTLIGATTRSGLITGPMRSRFGIIEHLEYYTAAELAAGVTRDAQLLG 186

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGF 260
             +  +AA EI  R+RGT RIA RLLRRVRDFAEVA  + ++   A +AL  L ID++G 
Sbjct: 187 FRIDHDAALEIGRRARGTMRIAKRLLRRVRDFAEVAGEQQVSLARAQSALNDLGIDELGL 246

Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320
           +  D   L  +   F GGP G+ T++  + E  + +E++ EP++IQ G + RTPRGR+  
Sbjct: 247 EARDRVILETLITKFAGGPTGLNTLATAVGEDGNTLEEVYEPFLIQNGLLSRTPRGRVAT 306

Query: 321 PIAWQHLG 328
             A+ HLG
Sbjct: 307 ERAYAHLG 314


>gi|13346824|gb|AAK19840.1|AF331924_5 Holliday junction DNA-helicase RuvB [Corynebacterium glutamicum]
          Length = 363

 Score =  324 bits (830), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 160/320 (50%), Positives = 224/320 (70%), Gaps = 1/320 (0%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           + DA+++L RP++L EF GQ +    L + +  AK R    DHVL  GPPGLGKTT+A +
Sbjct: 39  EYDAEVTL-RPKSLTEFIGQPKVRDQLSLVLTGAKNRGVVPDHVLLSGPPGLGKTTMAMI 97

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +A+ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++   EE+LY AMEDF+
Sbjct: 98  IAQELGTSLRMTSGPALERAGDLAAMLSNLMEGDVLFIDEIHRIARPAEEMLYMAMEDFR 157

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           +D++VG+GP A S+ + +  FTL+ ATTR G+LT PL+DRFG   ++ FY++ DL  +V+
Sbjct: 158 IDVIVGKGPGATSIPLEIPPFTLVGATTRSGMLTGPLRDRFGFTAQMEFYDVPDLTKVVK 217

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R AK+  + + ++AA EIA RSRGTPRIA RLLRRVRDFAEV     IT   A+AAL   
Sbjct: 218 RTAKILDVGIDNDAAVEIASRSRGTPRIANRLLRRVRDFAEVHADGHITMGAANAALDVF 277

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D++G D+LD   L  + R  GGGPVG+ T++  + E    +E++ EPY+++ G I RT
Sbjct: 278 DVDEVGLDRLDRAVLDALIRGHGGGPVGVNTLAVAVGEEPGTVEEVCEPYLVRAGMIART 337

Query: 314 PRGRLLMPIAWQHLGIDIPH 333
            RGR+    AW+HLG++ P 
Sbjct: 338 GRGRVATAAAWRHLGLEPPE 357


>gi|298490930|ref|YP_003721107.1| Holliday junction DNA helicase RuvB ['Nostoc azollae' 0708]
 gi|298232848|gb|ADI63984.1| Holliday junction DNA helicase RuvB ['Nostoc azollae' 0708]
          Length = 371

 Score =  324 bits (830), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 164/330 (49%), Positives = 221/330 (66%), Gaps = 7/330 (2%)

Query: 11  NVSQEDADIS-------LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           N+ Q DA I+        +RP+   ++ GQ +    L + IEAAK+R E +DH+L  GPP
Sbjct: 36  NILQPDAAINEEGRQEESIRPQRFADYIGQKDLKDVLDIAIEAAKSRGEIIDHLLLYGPP 95

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTT+A ++A E+GVN + TS P + +  D+  LL NL+  DVLF+DEIHRLS + EE
Sbjct: 96  GLGKTTMAMILASEMGVNCKITSAPALERPRDIVGLLVNLKPGDVLFVDEIHRLSRMTEE 155

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILYPAMED++LD+ VG+G SAR   I LS+FTL+ ATTRVG LT+PL++RFG+  +L FY
Sbjct: 156 ILYPAMEDYRLDITVGKGSSARIRSIPLSKFTLVGATTRVGALTSPLRERFGLIQKLRFY 215

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           E+++L  IV R A+L    V    A EIA RSRGTPRIA RLL+RVRD+AEV     I  
Sbjct: 216 EVDELSRIVIRTAELLKTTVNCSGATEIAKRSRGTPRIANRLLKRVRDYAEVKSRTEINE 275

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
            +A  AL    +D  G D  D + L++I  NF GGPVG+ET++A   E    IE++ EPY
Sbjct: 276 TVAAEALQLFQVDPCGLDWTDRKMLSVIIENFNGGPVGLETLAAATGEDTQTIEEVYEPY 335

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           ++Q G++ RTPRGR+    A+QH+G   P+
Sbjct: 336 LMQIGYLSRTPRGRVATKAAYQHMGFKPPN 365


>gi|209527513|ref|ZP_03276016.1| Holliday junction DNA helicase RuvB [Arthrospira maxima CS-328]
 gi|209492062|gb|EDZ92414.1| Holliday junction DNA helicase RuvB [Arthrospira maxima CS-328]
          Length = 369

 Score =  324 bits (830), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 164/313 (52%), Positives = 218/313 (69%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L ++ GQ +    L++ I AAK+R E LDH+L  GPPGLGKTT+A ++A E+GV 
Sbjct: 51  IRPQQLADYIGQRDLKQVLEIAIAAAKSRREPLDHLLLYGPPGLGKTTMALILATEMGVK 110

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + T+ P + K  D+A LL N +  ++LFIDEIHRLS + EEILYPAMED +LD+ +G+G
Sbjct: 111 CQITTAPSLEKPRDIAGLLVNQKPGEILFIDEIHRLSKMAEEILYPAMEDSRLDITIGQG 170

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            SAR+  I L++FT++ ATTR+G LT+PL+DRFG+  RL FYE+++L  IV R AKL   
Sbjct: 171 RSARTRSIPLNKFTIVGATTRIGALTSPLRDRFGLIQRLRFYEVDELAQIVNRTAKLLKT 230

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T E A EIA RSRGTPRIA RLLRRVRD+ EV  +  IT EIA  AL    +D +G D
Sbjct: 231 PITPEGALEIARRSRGTPRIANRLLRRVRDYLEVKASGDITGEIAAIALELFNVDPLGLD 290

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             D   L +I  NF GGPVG+ET++A   E    +E++ EPY++Q GFIQRT RGR+   
Sbjct: 291 WTDQHLLRIIIENFNGGPVGLETLAAASGEDAQTLEEVQEPYLMQIGFIQRTHRGRIATA 350

Query: 322 IAWQHLGIDIPHR 334
            AWQHLG + P +
Sbjct: 351 KAWQHLGYEPPQK 363


>gi|315187236|gb|EFU20993.1| Holliday junction DNA helicase subunit RuvB [Spirochaeta
           thermophila DSM 6578]
          Length = 342

 Score =  323 bits (829), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 165/316 (52%), Positives = 209/316 (66%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           +EDA    LRP +L EF G+ E   NLKVFI AA+ R EALDHV   GPPGLGKTTL  +
Sbjct: 11  EEDAQEERLRPLSLSEFQGKEEIKENLKVFIRAARQRGEALDHVFLSGPPGLGKTTLGSI 70

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +A ELGV  R TS P + K  DLA +LT L  R VLFIDEIHRL   +EE+LY AMED+ 
Sbjct: 71  IAHELGVELRITSAPALEKPKDLAGILTTLSPRSVLFIDEIHRLKPAIEEMLYVAMEDYV 130

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           +D ++G+GPSAR+V+I +  FTL+ ATT+ G L  PL  RFGI    N YE ED+  +++
Sbjct: 131 IDWIIGQGPSARTVRIPVPPFTLVGATTKAGKLATPLVSRFGITFHFNLYEKEDIIKVLR 190

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A++ GL+V + A   ++  SRGTPRIA R+LRR RDFAEV     IT +I    + RL
Sbjct: 191 RSARILGLSVEEPAFDLLSSCSRGTPRIANRMLRRARDFAEVYGKGVITPQIVRLTMDRL 250

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            ID+ G +  D R L  I   F GGPVG E+++  L E  D +ED  EPY+IQ GF+QRT
Sbjct: 251 GIDEAGLEAHDRRILDTIITKFDGGPVGAESLAIALGESVDTLEDFYEPYLIQCGFLQRT 310

Query: 314 PRGRLLMPIAWQHLGI 329
           PRGR++ P  + HL I
Sbjct: 311 PRGRIVTPRGYDHLNI 326


>gi|311742331|ref|ZP_07716140.1| crossover junction ATP-dependent DNA helicase RuvB [Aeromicrobium
           marinum DSM 15272]
 gi|311313959|gb|EFQ83867.1| crossover junction ATP-dependent DNA helicase RuvB [Aeromicrobium
           marinum DSM 15272]
          Length = 351

 Score =  323 bits (829), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 165/332 (49%), Positives = 223/332 (67%), Gaps = 1/332 (0%)

Query: 2   MDREGLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
            D  G+++     ED A  + LRPRTL E  GQ      L + ++AA AR    DHVL  
Sbjct: 6   FDESGVVTAVAGAEDRAFEAALRPRTLTELIGQDRVREQLSLVLDAAIARGSTPDHVLLS 65

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A ++    R TSGP I  AGDLAA+L+ + + DVLFIDEIHR+S  
Sbjct: 66  GPPGLGKTTLAMIIAHQVAAPLRITSGPAIQHAGDLAAILSGIGEGDVLFIDEIHRMSRP 125

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            EE+LY AMEDF++D++VG+GP A ++ + +  FT++ ATTR GLL  PL+DRFG   +L
Sbjct: 126 AEELLYMAMEDFRVDVVVGKGPGATAIPLEIPPFTVVGATTRAGLLPGPLRDRFGFTAQL 185

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           +FY+  DL  IV+R A L  L ++D A  EIA RSRGTPRIA RLLRRVRDFAEV     
Sbjct: 186 DFYDAADLHRIVRRSADLLALDLSDAAGHEIASRSRGTPRIANRLLRRVRDFAEVRTGGV 245

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +    A AAL    +D +G D+LD   LT +  +FGGGPVG+ T++  + E R+ +E++ 
Sbjct: 246 LDEAAARAALDLYEVDAIGLDRLDRAVLTALCSSFGGGPVGLSTLAVAVGEERETVEEVA 305

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EP++++ GF+ RTPRGR+  P AW+HLG+ +P
Sbjct: 306 EPFLVRLGFLARTPRGRVATPAAWRHLGMAVP 337


>gi|289641360|ref|ZP_06473525.1| Holliday junction DNA helicase RuvB [Frankia symbiont of Datisca
           glomerata]
 gi|289508822|gb|EFD29756.1| Holliday junction DNA helicase RuvB [Frankia symbiont of Datisca
           glomerata]
          Length = 350

 Score =  323 bits (829), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 163/330 (49%), Positives = 226/330 (68%), Gaps = 1/330 (0%)

Query: 2   MDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD EGL+S     QE A  + LRP TL EF GQ +    L + +E A+ARA   DHVL  
Sbjct: 1   MDVEGLVSPVAEPQERAFEAGLRPGTLAEFIGQQKVREQLMIMLEGARARARPPDHVLLS 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKT+LA ++ARE+ V  R TSGP + +AGDL A+LT L   +VLF+DEIHR++  
Sbjct: 61  GPPGLGKTSLAMIIAREMAVPLRMTSGPAVERAGDLVAILTALAPGEVLFLDEIHRIARP 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            EE+LY AMEDF++D+++G+GP A ++ + ++ FTL+ ATTR GLLT PL+DRFG    +
Sbjct: 121 AEELLYAAMEDFRVDVVLGKGPGATAIPLEIAPFTLVGATTRSGLLTGPLRDRFGFTAHM 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           +FY+  +L  ++ R A L G+ +T + A E+A RSRGTPRIA RLLRRVRD+AEV     
Sbjct: 181 DFYDTNELIDVLVRSAALLGVHITGDGAAEVAGRSRGTPRIANRLLRRVRDYAEVRADGV 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +T E+A AAL    +D +G D+LD   L  + R F GGPVG+ T++  + E  D +E++ 
Sbjct: 241 VTHEVAQAALRVYDVDALGLDRLDRAVLEALVRRFNGGPVGLATLAVAVGEEPDTVEEVA 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           EP++++ G + RTPRGR+  P A+ HLG+D
Sbjct: 301 EPFLVRAGLLARTPRGRIATPAAFTHLGLD 330


>gi|256375825|ref|YP_003099485.1| Holliday junction DNA helicase RuvB [Actinosynnema mirum DSM 43827]
 gi|255920128|gb|ACU35639.1| Holliday junction DNA helicase RuvB [Actinosynnema mirum DSM 43827]
          Length = 368

 Score =  323 bits (829), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 160/313 (51%), Positives = 220/313 (70%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           + LRP+ L EF GQ +    L++ +  A  R    DHVL  GPPGLGKT+LA ++A ELG
Sbjct: 47  TTLRPKDLREFVGQPKVREQLELVLHGAMRRGAPPDHVLLSGPPGLGKTSLAMIIAAELG 106

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
            + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++   EE+LY AMEDF++D++VG
Sbjct: 107 ASLRITSGPALERAGDLAAMLSNLVEGDVLFIDEIHRMARPAEEMLYLAMEDFRVDVVVG 166

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199
           +GP A S+ ++++ FTL+ ATTR G LT PL+DRFG    + FY  E+L  IV+R A + 
Sbjct: 167 KGPGATSIPLDIAPFTLVGATTRSGALTGPLRDRFGFTGHMEFYTPEELDLIVRRSAVIL 226

Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259
           G+ + +E A EIA RSRGTPRIA RLLRRVRDFAEV     +T E+A AAL    +D++G
Sbjct: 227 GVDLREEGAVEIAGRSRGTPRIANRLLRRVRDFAEVRADGAVTLEVARAALAVYDVDELG 286

Query: 260 FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLL 319
            D+LD   L  + R+FGGGPVG+ T++  + E    +E++ EPY+++ G + RTPRGR+ 
Sbjct: 287 LDRLDRAVLGALVRSFGGGPVGVSTLAVAVGEEPTTVEEVCEPYLVRAGMLARTPRGRVA 346

Query: 320 MPIAWQHLGIDIP 332
             +AWQHLG++ P
Sbjct: 347 TALAWQHLGLEPP 359


>gi|261885273|ref|ZP_06009312.1| Holliday junction DNA helicase RuvB [Campylobacter fetus subsp.
           venerealis str. Azul-94]
          Length = 318

 Score =  323 bits (829), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 157/298 (52%), Positives = 223/298 (74%), Gaps = 3/298 (1%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP T EE+ GQ +  SNLKVFI+AAK R E+LDHVLF GPPGLGKTTLA ++A E+G N
Sbjct: 20  LRPLTFEEYIGQEKIKSNLKVFIKAAKKRLESLDHVLFYGPPGLGKTTLAHIIANEMGAN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + +S P+I K+GDLAA+LTNLE+ DVLFIDEIHRLS  +EE+LY AMEDF+LD+++G G
Sbjct: 80  IKISSAPMIEKSGDLAAILTNLEEGDVLFIDEIHRLSPAIEEVLYSAMEDFRLDIIIGSG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+A+++KI++ +FTLI ATTR G+++ PL+DRFG+  RL FY   +L  I+   A   G 
Sbjct: 140 PAAQTIKIDIPKFTLIGATTRAGMISAPLRDRFGMQFRLQFYTDNELARIISIAASKLGK 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
             T EA+ EIA RSRGTPRIA RLL+R+RDFAEV+   +I+++ A ++L  L ++ +GFD
Sbjct: 200 NSTKEASLEIAKRSRGTPRIALRLLKRIRDFAEVSDENSISKDRAKSSLDSLGVNDLGFD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP-RGRL 318
           ++DL+YL ++  +     +G+ TI+A LSE    ++++I+PY++   F ++ P +GR+
Sbjct: 260 EMDLKYLDILVGS--KRALGLSTIAAALSEDEGTVKEVIDPYLLLNRFYRKEPEKGRI 315


>gi|2498879|sp|Q56214|RUVB_THETH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|7144503|gb|AAB03726.2| RuvB Protein [Thermus thermophilus]
          Length = 324

 Score =  323 bits (829), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 171/312 (54%), Positives = 224/312 (71%), Gaps = 1/312 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+TL+E+ GQ      L+V++EAAKAR E L+H+L  GPPGLGKTTLA V+A ELGVN
Sbjct: 6   LRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVN 65

Query: 82  FRSTSGPVIAKAGDLAALLTN-LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
            R TSGP I K GDLAA+L N LE+ D+LFIDEIHRLS   EE LYPAMEDF +D+++G+
Sbjct: 66  LRVTSGPAIEKPGDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQ 125

Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
           GP+AR++++ L RF LI ATTR GL+T PL  RFGI   L +Y  E+L   V R A+L G
Sbjct: 126 GPAARTIRLELPRFALIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLG 185

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGF 260
           + +T+EAA EI  RSRGT R+A RL RRVRDFA+V   + ITRE A  AL  L +D++G 
Sbjct: 186 VRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVEGEEVITRERALEALAALGLDELGL 245

Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320
           ++ D   L ++   FG GPVG+ T++  LSE    +E++ EPY+I+QG ++RTPRGR+  
Sbjct: 246 EKRDREILEVLILRFGAGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRTPRGRVAT 305

Query: 321 PIAWQHLGIDIP 332
            +A++HLG   P
Sbjct: 306 ELAYRHLGYPPP 317


>gi|166368034|ref|YP_001660307.1| Holliday junction DNA helicase RuvB [Microcystis aeruginosa
           NIES-843]
 gi|189046037|sp|B0JY77|RUVB_MICAN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|166090407|dbj|BAG05115.1| holliday junction DNA helicase [Microcystis aeruginosa NIES-843]
          Length = 358

 Score =  323 bits (828), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 159/327 (48%), Positives = 230/327 (70%), Gaps = 2/327 (0%)

Query: 5   EGLLSRNVSQEDADISL--LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           E LL+ N + E+ + +   +RP++LE++ GQ +  +NLKV I AAKAR EA+DH+LF GP
Sbjct: 15  ENLLTPNPTIEETEKAAAEIRPQSLEDYIGQQDLKANLKVTIAAAKARQEAIDHLLFYGP 74

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTT+A ++A E+GVN R T+ P + +  D+  +L NL+ RD+LFIDEIHRL+ + E
Sbjct: 75  PGLGKTTMALILAAEMGVNCRITAAPALERPRDITGILINLQPRDILFIDEIHRLNRVTE 134

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMED++LD+ +G+G +A+   I+L  FTLI ATT+VG LT+PL+DRFG+  RL F
Sbjct: 135 ELLYPAMEDYRLDVTIGKGQAAKIRSISLPPFTLIGATTKVGSLTSPLRDRFGLIQRLRF 194

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y +E+L  I+ R A +  + +T+  A EIA RSRGTPRIA RLL+RVRD+ +V     I+
Sbjct: 195 YAVEELTAIILRSATIFNIPITEAGAIEIARRSRGTPRIANRLLKRVRDYVQVKGETIIS 254

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            ++A   L +L +D MG D  D   L  + + F G PVG+E ++A   E    IE++ EP
Sbjct: 255 PQLAAEGLNQLNVDSMGLDWTDRLVLKTMIQQFQGKPVGLEAVAAATGEDAKTIEEVYEP 314

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           Y++Q G++ RTPRGR++   A++HLG+
Sbjct: 315 YLLQIGYLNRTPRGRVVTSAAYEHLGL 341


>gi|113475089|ref|YP_721150.1| Holliday junction DNA helicase RuvB [Trichodesmium erythraeum
           IMS101]
 gi|123161082|sp|Q115Z7|RUVB_TRIEI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|110166137|gb|ABG50677.1| Holliday junction DNA helicase subunit RuvB [Trichodesmium
           erythraeum IMS101]
          Length = 386

 Score =  323 bits (828), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 158/311 (50%), Positives = 214/311 (68%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L+E+ GQ +    L + I AAK+R E+LDH+L  GPPGLGKTT++ ++A E+ VN
Sbjct: 68  IRPQRLDEYIGQKDLKEVLNIAISAAKSRKESLDHLLLYGPPGLGKTTMSLILAAEMEVN 127

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + T+ P I K  D+  LL  L+  D+LFIDEIHRLS + EEILYPAMEDF+LD+ VG+G
Sbjct: 128 CKITTAPAIEKPRDIVGLLVGLQKGDILFIDEIHRLSKMTEEILYPAMEDFRLDITVGQG 187

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            S+++  I L  FTL+ ATT+VG LT+PL+DRFGI  RL FYE+++L  I+ R AK+   
Sbjct: 188 KSSKTRSIPLKPFTLVGATTKVGSLTSPLRDRFGIIQRLRFYEVDELSLIIIRAAKVLNT 247

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T++ A E+A RSRGTPRIA RLLRRVRD++EV     I  EIA  AL    +D +G D
Sbjct: 248 DITEDGAEEVARRSRGTPRIANRLLRRVRDYSEVKKLTPINAEIAGEALELFNVDPLGLD 307

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             D   L  +  N+ GGP G+ET++A   E    IE++ EPY++Q GF+QRTPRGR++  
Sbjct: 308 WTDRNLLRTMIENYNGGPAGLETMAAATGEDAQTIEEVYEPYLMQIGFMQRTPRGRVVTA 367

Query: 322 IAWQHLGIDIP 332
             W+HLG   P
Sbjct: 368 AGWRHLGFSPP 378


>gi|311772314|pdb|3PFI|A Chain A, 2.7 Angstrom Resolution Crystal Structure Of A Probable
           Holliday Junction Dna Helicase (Ruvb) From Campylobacter
           Jejuni Subsp. Jejuni Nctc 11168 In Complex With
           Adenosine-5'-Diphosphate
 gi|311772315|pdb|3PFI|B Chain B, 2.7 Angstrom Resolution Crystal Structure Of A Probable
           Holliday Junction Dna Helicase (Ruvb) From Campylobacter
           Jejuni Subsp. Jejuni Nctc 11168 In Complex With
           Adenosine-5'-Diphosphate
          Length = 338

 Score =  323 bits (828), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 156/309 (50%), Positives = 217/309 (70%), Gaps = 1/309 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP   + + GQ     NL VFI AAK R E LDH+LF GP GLGKTTLA +++ E   N
Sbjct: 23  LRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEXSAN 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            ++T+ P I K+GDLAA+LTNL + D+LFIDEIHRLS  +EE+LYPA ED++LD+++G G
Sbjct: 83  IKTTAAPXIEKSGDLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAXEDYRLDIIIGSG 142

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+A+++KI+L +FTLI ATTR G L+NPL+DRFG   RL FY+  +L  I+Q+ A     
Sbjct: 143 PAAQTIKIDLPKFTLIGATTRAGXLSNPLRDRFGXQFRLEFYKDSELALILQKAALKLNK 202

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
              ++AA EIA RSR TPRIA RLL+RVRDFA+V   + IT + A+ AL  L ++++GFD
Sbjct: 203 TCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIITEKRANEALNSLGVNELGFD 262

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             DLRYL ++       P+G+ +I+A LSE  + IED+IEPY++  G+I+RT +GR+   
Sbjct: 263 AXDLRYLELLTAA-KQKPIGLASIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIASA 321

Query: 322 IAWQHLGID 330
            ++  L ++
Sbjct: 322 KSYSALKLN 330


>gi|325001438|ref|ZP_08122550.1| Holliday junction DNA helicase RuvB [Pseudonocardia sp. P1]
          Length = 360

 Score =  323 bits (828), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 159/318 (50%), Positives = 225/318 (70%), Gaps = 1/318 (0%)

Query: 16  DADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           +AD+ + LRPR+L+EF GQ      L++ +E A+ R +  DH+L  GPPGLGKT+LA +V
Sbjct: 30  EADVEASLRPRSLDEFVGQPRVREQLELVLEGARRRGDPPDHILLSGPPGLGKTSLAMIV 89

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A+ELG + R TSGP + +AGDLAA+L+NL   DVLFIDEIHR +   EE+LY AMEDF++
Sbjct: 90  AQELGASIRLTSGPALERAGDLAAMLSNLVPGDVLFIDEIHRTARPAEEMLYLAMEDFRV 149

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D++VG+GP A S+ ++++ FTL+ ATTR G LT PL+DRFG    + FYE+ +L+ ++ R
Sbjct: 150 DVVVGKGPGATSIPLDVAPFTLVGATTRAGSLTGPLRDRFGFTGHMEFYEVLELEHVLHR 209

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A + G+ +  + A EIA R RGTPR+A RLLRRVRDFAEV     I RE+A AAL    
Sbjct: 210 AAGILGIDLRADGAEEIAGRCRGTPRVANRLLRRVRDFAEVRADGVIHREVARAALAVYD 269

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D++G D+LD   L+ + R+F GGPVG+ T++  + E    +E++ EPY+++ G + RTP
Sbjct: 270 VDELGLDRLDRAVLSALVRSFHGGPVGVSTLAVAVGEDAGTVEEVCEPYLVRAGMLARTP 329

Query: 315 RGRLLMPIAWQHLGIDIP 332
           RGR+  P+AW HLG+  P
Sbjct: 330 RGRVATPLAWTHLGLTPP 347


>gi|257457429|ref|ZP_05622599.1| holliday junction DNA helicase RuvB [Treponema vincentii ATCC
           35580]
 gi|257445158|gb|EEV20231.1| holliday junction DNA helicase RuvB [Treponema vincentii ATCC
           35580]
          Length = 350

 Score =  323 bits (828), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 157/311 (50%), Positives = 213/311 (68%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L +F GQ     NL VFI+AA++R E+LDH+  +GPPGLGKTTLAQ+ A+ELGV 
Sbjct: 27  LRPQLLRDFQGQQNIKENLSVFIQAARSRGESLDHLFLIGPPGLGKTTLAQITAQELGVE 86

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + T  P + K  DLA +LT L +R V FIDEIHRL   +EE+LY AMED++LD ++G+G
Sbjct: 87  CKITGAPALDKPKDLAGILTTLSERSVFFIDEIHRLKPAIEEMLYIAMEDYELDWIIGQG 146

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P AR+V+I L  FTLI ATTR G++++PL  RFGI  R  FY  E+L +I+ R A +  +
Sbjct: 147 PGARTVRIPLPPFTLIGATTRAGMVSSPLISRFGIVQRFEFYSDEELASIIMRSADILKI 206

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  +AA  +A  SRGTPR+A RLLRR+RDFA +  + T+        L RL ID++G +
Sbjct: 207 NIEKKAAIALARCSRGTPRVANRLLRRMRDFAFIEGSDTVREVTVAQGLERLHIDRLGLE 266

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             D + L  I  N+GGGPVG ET++  + E +D +ED  EPY+IQ G +QRTPRGR++  
Sbjct: 267 NYDRQILRSIIENYGGGPVGAETLAISIGESQDTLEDYYEPYLIQTGLLQRTPRGRMVTE 326

Query: 322 IAWQHLGIDIP 332
            A+ HLG+ IP
Sbjct: 327 KAYAHLGLKIP 337


>gi|152990121|ref|YP_001355843.1| Holliday junction DNA helicase RuvB [Nitratiruptor sp. SB155-2]
 gi|166231506|sp|A6Q1X7|RUVB_NITSB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|151421982|dbj|BAF69486.1| holliday junction DNA helicase RuvB [Nitratiruptor sp. SB155-2]
          Length = 335

 Score =  323 bits (828), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 166/306 (54%), Positives = 227/306 (74%), Gaps = 1/306 (0%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           S+E +  + LRP   +E+ GQ +  +NLKVFI+A K R E LDHVLF GPPGLGKTTL+ 
Sbjct: 11  SEESSFETTLRPSDWDEYIGQEKIKNNLKVFIQACKKRGETLDHVLFFGPPGLGKTTLSL 70

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++A ++  N + T+ P+I K+GDLAA+LTNLE+ D+LFIDEIHRLS  +EEILYPAMEDF
Sbjct: 71  IIASQMEANIKITAAPMIEKSGDLAAILTNLEEGDILFIDEIHRLSPAIEEILYPAMEDF 130

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           +LD+++G GP+A+++KI+L +FTLI ATTR G+L++PL+DRFG+  RL FY  ++L  I+
Sbjct: 131 RLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSSPLRDRFGMHFRLQFYTPQELAQII 190

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
              A      +  EAA EIA RSRGTPRIA RLL+RVRDF++VA  KTIT +    AL  
Sbjct: 191 TNAANKLSKDIDAEAALEIAKRSRGTPRIALRLLKRVRDFSDVADEKTITLKRTQKALEA 250

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D+ GFD+LDL+ L ++A    G P+G+ TI+A LSE    IED+IEP+++  G+++R
Sbjct: 251 LGVDERGFDELDLKLLKLLADA-KGKPLGLSTIAAALSEDEGTIEDVIEPFLLANGYLER 309

Query: 313 TPRGRL 318
           T RGR+
Sbjct: 310 TARGRM 315


>gi|288923989|ref|ZP_06418059.1| Holliday junction DNA helicase RuvB [Frankia sp. EUN1f]
 gi|288344667|gb|EFC79126.1| Holliday junction DNA helicase RuvB [Frankia sp. EUN1f]
          Length = 355

 Score =  323 bits (828), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 162/329 (49%), Positives = 228/329 (69%), Gaps = 1/329 (0%)

Query: 3   DREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           D  GL+S   + +E A  + LRPRTL EF GQ +    L + +E A+ R    DHVL  G
Sbjct: 4   DDGGLVSAAATPEEKAFEAGLRPRTLSEFVGQRKVREQLSIMLEGAQGRGRPPDHVLLSG 63

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKT+LA ++A ELGV  R TSGP I +AGDL A+LT L   +VLF+DEIHR++   
Sbjct: 64  PPGLGKTSLAMIIAEELGVPLRMTSGPAIERAGDLVAILTALTPGEVLFLDEIHRIARPA 123

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMEDF++D+++G+GP A ++ ++L+ FTL+ ATTR GLLT PL+DRFG    ++
Sbjct: 124 EELLYAAMEDFRVDVVLGKGPGATAIPLDLAPFTLVGATTRSGLLTGPLRDRFGFTAHMD 183

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY  ++L  ++ R A+L G+ +TD+ A E+A RSRGTPRIA RLLRRVRD+AEV     +
Sbjct: 184 FYGADELALVLARSARLLGVRLTDDGAAEVAGRSRGTPRIANRLLRRVRDYAEVRADGVV 243

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           +RE+A AAL    +D +G D+LD   L  + R FGGGPVG+ T++  + E  + +ED+ E
Sbjct: 244 SREVAQAALRIYDVDGLGLDRLDRAVLDALVRRFGGGPVGLGTLAVSVGEEAETVEDVSE 303

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           P++++ G + RT RGR+  P A+ HLG++
Sbjct: 304 PFLLRAGLLVRTARGRVATPAAFTHLGLE 332


>gi|169629966|ref|YP_001703615.1| Holliday junction DNA helicase RuvB [Mycobacterium abscessus ATCC
           19977]
 gi|169241933|emb|CAM62961.1| Holliday junction DNA helicase RuvB [Mycobacterium abscessus]
          Length = 358

 Score =  323 bits (828), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 157/322 (48%), Positives = 223/322 (69%), Gaps = 1/322 (0%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
            V + D D  L RP++L EF GQ      L++ +  AK R    DH+L  GPPGLGKT+L
Sbjct: 27  TVGENDVDAGL-RPKSLREFIGQPRVREQLELVLSGAKNRGGTPDHILLSGPPGLGKTSL 85

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           A ++A ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++   EE+LY AME
Sbjct: 86  AMIIAAELGSSLRVTSGPALERAGDLAAMLSNLVEHDVLFIDEIHRIARPAEEMLYLAME 145

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           DF++D++VG+GP A S+ + ++ FTL+ ATTR G LT PL+DRFG    ++FYE ++L+ 
Sbjct: 146 DFRVDIVVGKGPGATSIPLEVAPFTLVGATTRSGSLTGPLRDRFGFTAHMDFYEPDELEL 205

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           ++ R A + G+ +  +A  EIA RSRGTPRIA RLLRRVRD+AEV     IT ++A +AL
Sbjct: 206 VLARSAGILGIELGADAGTEIARRSRGTPRIANRLLRRVRDYAEVRADGVITVDVAKSAL 265

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
               +D++G D+LD   L  + R+FGGGPVG+ T++  + E    +E++ EP++++ G +
Sbjct: 266 AVYDVDELGLDRLDRAVLLALTRSFGGGPVGLSTLAVAVGEESTTVEEVCEPFLVRAGML 325

Query: 311 QRTPRGRLLMPIAWQHLGIDIP 332
            RTPRGR+  P+AW HLG+  P
Sbjct: 326 ARTPRGRVATPLAWTHLGLTPP 347


>gi|157363791|ref|YP_001470558.1| Holliday junction DNA helicase RuvB [Thermotoga lettingae TMO]
 gi|172045991|sp|A8F5R0|RUVB_THELT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|157314395|gb|ABV33494.1| Holliday junction DNA helicase RuvB [Thermotoga lettingae TMO]
          Length = 343

 Score =  323 bits (828), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 154/313 (49%), Positives = 226/313 (72%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           DA +  LRP TLE++ GQ E    L + ++AAK R E LDH+LF GPPGLGKTTLA V+A
Sbjct: 11  DAILVSLRPDTLEDYIGQEEVKKKLYIAMKAAKLRNEPLDHILFSGPPGLGKTTLAFVIA 70

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           +E+G N   TSGPV+ + GD+AA+L+++E+ D+LFIDEIHR++  VEE+ Y A+ED+++D
Sbjct: 71  KEMGKNIHITSGPVLERQGDIAAILSSIEEGDILFIDEIHRINKAVEEVFYSALEDYKVD 130

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           +M+G+GP+ARS++I L  FTL+ ATTR GLL++PL++RFG+ + L FY +++L  I++R 
Sbjct: 131 IMIGKGPTARSIRIGLKPFTLVGATTRSGLLSSPLRNRFGMILELQFYTVKELMEIIKRA 190

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255
            K+  + + + AA  IA R+RGTPRIA RLL+RVRD A +     I   + +  +  L I
Sbjct: 191 CKIMNIEIEESAAQLIASRARGTPRIALRLLKRVRDVATIRKENKIISHLVEKTMDILEI 250

Query: 256 DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR 315
           DK+G D++D + L  +   + GGPVGIE ++A L+   D ++++ EPY++QQG I RTPR
Sbjct: 251 DKLGLDEMDRKILRTLIEIYDGGPVGIEALAATLNLEIDTLKEIHEPYLLQQGLIIRTPR 310

Query: 316 GRLLMPIAWQHLG 328
           GR+   IA++HLG
Sbjct: 311 GRVATGIAYEHLG 323


>gi|187735135|ref|YP_001877247.1| Holliday junction DNA helicase RuvB [Akkermansia muciniphila ATCC
           BAA-835]
 gi|238691873|sp|B2UPI9|RUVB_AKKM8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|187425187|gb|ACD04466.1| Holliday junction DNA helicase RuvB [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 339

 Score =  323 bits (828), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 157/311 (50%), Positives = 215/311 (69%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP    EF GQ +    L + +EAA+ R + LDH+L  GPPGLGKTTLA ++A  +G  
Sbjct: 21  LRPPAFSEFCGQEKIKDRLMLMVEAARQRDDVLDHILLSGPPGLGKTTLANIIANAVGCR 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
             +TSGP I KAGDLA +LTNLE  D+LFIDEIHRL   +EE LYPAMEDF+LD+++ +G
Sbjct: 81  IHTTSGPQIEKAGDLAGVLTNLEKGDILFIDEIHRLHPAIEEYLYPAMEDFRLDIIIDQG 140

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+++NL +FTL+ ATTR G+LT+PL+ RFG+  RL++Y  E+L  I++R A L  +
Sbjct: 141 PNARSIQLNLPKFTLVGATTRAGMLTSPLRSRFGLVNRLDYYTREELCAIIERSAGLLNV 200

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            V  E A +IA+RSRGTPR+A  LLR VRD+A+V     IT ++A  AL  + ID  G D
Sbjct: 201 PVDPEGALQIALRSRGTPRVANSLLRWVRDYAQVRGDGVITEQLAHDALTMIEIDDDGLD 260

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           ++D R L  +   F GGPVG+ +++  + E    +ED+ EP++I QG+I RTPRGR+ MP
Sbjct: 261 EMDKRLLEAMIYKFNGGPVGLSSLAVAVGEDASTLEDVHEPFLIMQGYISRTPRGRVAMP 320

Query: 322 IAWQHLGIDIP 332
            A+  +G   P
Sbjct: 321 SAYLKMGAAPP 331


>gi|158316900|ref|YP_001509408.1| Holliday junction DNA helicase RuvB [Frankia sp. EAN1pec]
 gi|238686842|sp|A8KZE6|RUVB_FRASN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|158112305|gb|ABW14502.1| Holliday junction DNA helicase RuvB [Frankia sp. EAN1pec]
          Length = 353

 Score =  323 bits (828), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 161/330 (48%), Positives = 228/330 (69%), Gaps = 1/330 (0%)

Query: 2   MDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M  EGL+S   + +E A  + LRP+ L+EF GQ +    L + +E A+ R    DHVL  
Sbjct: 1   MSGEGLVSAAAAPEEQAFEAGLRPKNLDEFVGQRKVREQLSIMLEGARGRGRPPDHVLLS 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKT+LA ++A ELGV  R TSGP I +AGDL A+LT L   +VLF+DEIHR++  
Sbjct: 61  GPPGLGKTSLAMIIAEELGVPLRMTSGPAIERAGDLVAILTALTPGEVLFLDEIHRIARP 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            EE+LY AMEDF++D+++G+GP A ++ ++L+ FTL+ ATTR GLLT PL+DRFG    +
Sbjct: 121 AEELLYAAMEDFRVDVVLGKGPGATAIPLDLAPFTLVGATTRSGLLTGPLRDRFGFTAHM 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           +FY+  +L  ++ R A+L G+ +T+  A E+A RSRGTPRIA RLLRRVRD+AEV     
Sbjct: 181 DFYDAAELALVLTRSARLLGVQLTEGGAAEVAGRSRGTPRIANRLLRRVRDYAEVRADGV 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           ++RE+A AAL    +D +G D+LD   L  + R FGGGPVG+ T++  + E  D +ED+ 
Sbjct: 241 VSREVARAALRIYDVDALGLDRLDRAVLDALVRRFGGGPVGLSTLAVAVGEEADTVEDVS 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           EP++++ G + RT RGR+  P A+ HLG++
Sbjct: 301 EPFLLRAGLLIRTARGRVATPAAFTHLGLE 330


>gi|159037424|ref|YP_001536677.1| Holliday junction DNA helicase RuvB [Salinispora arenicola CNS-205]
 gi|189046044|sp|A8LXW9|RUVB_SALAI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|157916259|gb|ABV97686.1| Holliday junction DNA helicase RuvB [Salinispora arenicola CNS-205]
          Length = 354

 Score =  323 bits (828), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 163/333 (48%), Positives = 228/333 (68%), Gaps = 1/333 (0%)

Query: 2   MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M  + L+S  VS  + D+ + +RPR L EF  Q      L + ++ A  R    DH+L  
Sbjct: 1   MTGDNLVSAYVSDAERDVEASVRPRRLAEFIAQERVRDQLDLLLQGALRRGSPPDHILLS 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKT+LA +VA ELG + R TSGP I ++GDLAA+LT+L + DVLFIDEIHR++  
Sbjct: 61  GPPGLGKTSLANIVAAELGTSIRVTSGPAIERSGDLAAILTSLGEGDVLFIDEIHRIARP 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            EE+LY AMEDF++D++VG+GP A ++ +++  FTL+ ATTR GLLT P++DRFG    L
Sbjct: 121 AEELLYSAMEDFRVDVVVGKGPGATAIPLDVEPFTLVGATTRAGLLTGPMRDRFGFVAHL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           +FY   DL+T++ R A++ G+ +T + A EI+ RSRGTPRIA RLLRRVRDFAEV     
Sbjct: 181 DFYSPADLETLLHRSARILGVPITGDGAVEISGRSRGTPRIANRLLRRVRDFAEVRADGV 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +TRE A AALL   +D +G D+LD + LT +   F GGPVG+ T++  + E  D +E++ 
Sbjct: 241 VTREAARAALLVYDVDALGLDRLDRQVLTALVDLFRGGPVGLSTLAVAVGEQPDTVEEVC 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EP++++ G + RTPRGR+    AW+HLG   P+
Sbjct: 301 EPFLVRAGLLARTPRGRVATEAAWRHLGRTPPN 333


>gi|325672615|ref|ZP_08152311.1| crossover junction ATP-dependent DNA helicase RuvB [Rhodococcus
           equi ATCC 33707]
 gi|325556492|gb|EGD26158.1| crossover junction ATP-dependent DNA helicase RuvB [Rhodococcus
           equi ATCC 33707]
          Length = 377

 Score =  323 bits (827), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 161/329 (48%), Positives = 224/329 (68%), Gaps = 1/329 (0%)

Query: 5   EGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E  ++ N    D ++ + LRP+ L +F GQ      L++ +  AK R    DHVL  GPP
Sbjct: 19  ESAVTANFVSSDGEVEASLRPKNLSDFIGQPRVREQLQLVLTGAKLRGGTPDHVLLSGPP 78

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKT++A ++A ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++   EE
Sbjct: 79  GLGKTSMAMIIATELGTSLRLTSGPALERAGDLAAMLSNLVEGDVLFIDEIHRMARPAEE 138

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LY AMEDF++D++VG+GP A S+ + ++ FTL+ ATTR G LT PL+DRFG    ++FY
Sbjct: 139 MLYLAMEDFRVDVVVGKGPGATSIPLEVAPFTLVGATTRSGALTGPLRDRFGFTAHMDFY 198

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           E  +L+ I+ R A + G+ + +EA  EIA RSRGTPRIA RLLRRVRD+AEV     ITR
Sbjct: 199 EPHELQLILLRSAGILGIELGEEAGAEIAGRSRGTPRIANRLLRRVRDYAEVRADGIITR 258

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           EIA AAL    +D++G D+LD   L  + R+FGGGPVG+ T++  + E    +E++ EP+
Sbjct: 259 EIAQAALAVYDVDQLGLDRLDRAVLGALVRSFGGGPVGVSTLAVAVGEEPSTVEEVCEPF 318

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           +++ G I RTPRGR+    AW  LG+  P
Sbjct: 319 LVRAGMIARTPRGRVATAAAWAQLGLTPP 347


>gi|256371995|ref|YP_003109819.1| Holliday junction DNA helicase RuvB [Acidimicrobium ferrooxidans
           DSM 10331]
 gi|256008579|gb|ACU54146.1| Holliday junction DNA helicase RuvB [Acidimicrobium ferrooxidans
           DSM 10331]
          Length = 351

 Score =  323 bits (827), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 162/311 (52%), Positives = 222/311 (71%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP  L +F GQ E  + L+V +EAA+ R E  DH+LF GPPGLGKT+LA ++ARELG  
Sbjct: 32  LRPERLADFIGQRELKAQLEVLLEAARGRGETPDHLLFAGPPGLGKTSLAFIIARELGTG 91

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGP + + GDLA+LL +L   +VLFIDEIHRL   VEE+LY AMEDF++DL++G+G
Sbjct: 92  VRVTSGPALQRIGDLASLLADLHGGEVLFIDEIHRLPRAVEELLYGAMEDFRVDLVLGKG 151

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P ARSV++++ RFTL+ ATTRVGL++ PL+DRFG   RL++Y  ++L  +V+R A+   +
Sbjct: 152 PGARSVRLDVPRFTLVGATTRVGLISAPLRDRFGYHYRLDYYGDDELVAVVERAARTLSV 211

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  +AA EIA RSRGTPR+A RLLRRVRD+AEV     I RE+A  AL    +D +G D
Sbjct: 212 PIEPDAALEIARRSRGTPRLANRLLRRVRDYAEVRGDGAIDRELALEALDLFGVDVLGLD 271

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           ++DL  L ++   F G PVG+ T++  + E    +E++ EP++IQ+G I RTPRGR+  P
Sbjct: 272 RVDLEILRVLCVQFPGRPVGLSTLAVAVRENAGTLEEVYEPFLIQRGLIVRTPRGRMPTP 331

Query: 322 IAWQHLGIDIP 332
            A+ HLG+D P
Sbjct: 332 RAYVHLGLDAP 342


>gi|296139645|ref|YP_003646888.1| Holliday junction DNA helicase RuvB [Tsukamurella paurometabola DSM
           20162]
 gi|296027779|gb|ADG78549.1| Holliday junction DNA helicase RuvB [Tsukamurella paurometabola DSM
           20162]
          Length = 364

 Score =  323 bits (827), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 156/321 (48%), Positives = 225/321 (70%), Gaps = 2/321 (0%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +S +D+D   LRP++L+EF GQ +    L++ +  A+ R    DH+L  GPPGLGKT+LA
Sbjct: 25  LSGDDSDS--LRPKSLDEFIGQPKVREQLQLVLHGARKRGGTPDHILLSGPPGLGKTSLA 82

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            ++A ELG   R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++   EE+LY AMED
Sbjct: 83  MIIAAELGTALRVTSGPALERAGDLAAMLSNLVEGDVLFIDEIHRMARPAEEMLYLAMED 142

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F++D++VG+GP A S+ ++++ FTL+ ATTR G LT PL+DRFG    ++FY+  DL  +
Sbjct: 143 FRVDVVVGKGPGATSIPLDVAPFTLVGATTRSGSLTGPLRDRFGFTAHMDFYDTADLIQV 202

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           ++R AK+ G+ +  EAA EI  RSRGTPRIA RLLRRVRDFA+V     +T ++A  AL 
Sbjct: 203 IERSAKILGIEIVREAAAEIGSRSRGTPRIANRLLRRVRDFADVRADGIVTVDVARGALK 262

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
              +D++G D+LD   L  + R+FGGGPVG+ T++  + E    +E++ EP++++ G + 
Sbjct: 263 VYDVDELGLDRLDRAVLGALIRSFGGGPVGVSTLAVAVGEEPGTVEEVCEPFLVRAGMLA 322

Query: 312 RTPRGRLLMPIAWQHLGIDIP 332
           RTPRGR+    AW HLG++ P
Sbjct: 323 RTPRGRVATMAAWHHLGLEPP 343


>gi|256852229|ref|ZP_05557615.1| Holliday junction DNA helicase RuvB [Lactobacillus jensenii
           27-2-CHN]
 gi|260661739|ref|ZP_05862650.1| Holliday junction DNA helicase RuvB [Lactobacillus jensenii
           115-3-CHN]
 gi|282932643|ref|ZP_06338057.1| holliday junction DNA helicase RuvB [Lactobacillus jensenii 208-1]
 gi|256615275|gb|EEU20466.1| Holliday junction DNA helicase RuvB [Lactobacillus jensenii
           27-2-CHN]
 gi|260547486|gb|EEX23465.1| Holliday junction DNA helicase RuvB [Lactobacillus jensenii
           115-3-CHN]
 gi|281303217|gb|EFA95405.1| holliday junction DNA helicase RuvB [Lactobacillus jensenii 208-1]
          Length = 337

 Score =  322 bits (826), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 167/337 (49%), Positives = 226/337 (67%), Gaps = 8/337 (2%)

Query: 1   MMDREGLLSRNVSQEDADISL-----LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALD 55
           MMD +   SR V+ E+    L     LRP++  ++ GQ    S ++++I+AAK R EALD
Sbjct: 1   MMDED---SRVVAGEEEQGDLQDELSLRPQSFSQYIGQKRVKSEMEIYIQAAKKRDEALD 57

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIH 115
           HVL  GPPGLGKTT+A V+A ELGVN ++TSGP I +AGDL ALL++L+  DVLFIDEIH
Sbjct: 58  HVLLYGPPGLGKTTMAFVIANELGVNLKNTSGPAIERAGDLVALLSDLDPGDVLFIDEIH 117

Query: 116 RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
           RL+  +EEILY AMED+ +D++VGEG ++ +V + L  FTLI ATTR G L+ PL+DRFG
Sbjct: 118 RLAKPIEEILYSAMEDYYVDIVVGEGSTSHAVHVPLPPFTLIGATTRAGDLSAPLRDRFG 177

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
           I   + +Y I DL+ I+QR +++    +  EAA E+A RSRGTPR+A RLL+RVRD+A+V
Sbjct: 178 IVEHMQYYTIGDLEKIIQRSSEVFATKIGKEAAHELARRSRGTPRVANRLLKRVRDYAQV 237

Query: 236 AHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDA 295
                I+      AL +L +D  G D  D + L  I   + GGPVGI T++A + E  D 
Sbjct: 238 KEENKISLATTKYALDQLQVDNEGLDLTDRKILRTIIEAYHGGPVGIRTLAANIGEDTDT 297

Query: 296 IEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           IE + EPY++Q  FI  TPRGR+    A+  LGI +P
Sbjct: 298 IEAVYEPYLLQHKFITMTPRGRVATQKAYLQLGIPLP 334


>gi|189346153|ref|YP_001942682.1| Holliday junction DNA helicase RuvB [Chlorobium limicola DSM 245]
 gi|238692201|sp|B3EH23|RUVB_CHLL2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|189340300|gb|ACD89703.1| Holliday junction DNA helicase RuvB [Chlorobium limicola DSM 245]
          Length = 348

 Score =  322 bits (826), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 161/297 (54%), Positives = 212/297 (71%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  + +F GQ     NL+VFI AAK R +ALDHVL  GPPGLGKTTLA ++A E+G +
Sbjct: 21  IRPIRMLDFAGQQRLTDNLRVFISAAKMRGDALDHVLLSGPPGLGKTTLAHIIAAEMGSS 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            ++TSGP++ KAG+LA LLT L+  DVLFIDEIHR+   VEE LY AMEDF++D+M+  G
Sbjct: 81  IKATSGPLLDKAGNLAGLLTGLQKGDVLFIDEIHRMPPAVEEYLYSAMEDFRIDIMLDSG 140

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSAR+V++ +  FTL+ ATTR GLLT+PL+ RFGI  R ++Y  + L+ I+ R + + G+
Sbjct: 141 PSARAVQLRIEPFTLVGATTRSGLLTSPLRARFGINSRFDYYSADLLEKIIIRASGILGI 200

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            V  +AA EIA RSRGTPRIA RLLRR RDFA+VA A  ITR IA   L  L ID+ G D
Sbjct: 201 GVDQDAAAEIAGRSRGTPRIANRLLRRARDFAQVADAPLITRSIAMTTLDCLEIDEEGLD 260

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRL 318
            +D + +  I   F GGPVG  +++  + E +D IE++ EPY+IQ G+I RTPRGR+
Sbjct: 261 DMDKKIMDTIVNKFSGGPVGAASLAVSVGEEQDTIEEVYEPYLIQAGYIARTPRGRV 317


>gi|312139495|ref|YP_004006831.1| holliday junction DNA helicase ruvb [Rhodococcus equi 103S]
 gi|311888834|emb|CBH48146.1| Holliday junction DNA helicase RuvB [Rhodococcus equi 103S]
          Length = 371

 Score =  322 bits (826), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 161/329 (48%), Positives = 223/329 (67%), Gaps = 1/329 (0%)

Query: 5   EGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E  ++ N    D ++ + LRP+ L +F GQ      L++ +  AK R    DHVL  GPP
Sbjct: 13  ESAVTANFVSSDGEVEASLRPKNLSDFIGQPRVREQLQLVLTGAKLRGGTPDHVLLSGPP 72

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKT++A ++A ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++   EE
Sbjct: 73  GLGKTSMAMIIATELGTSLRLTSGPALERAGDLAAMLSNLVEGDVLFIDEIHRMARPAEE 132

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LY AMEDF++D++VG+GP A S+ + ++ FTL+ ATTR G LT PL+DRFG    ++FY
Sbjct: 133 MLYLAMEDFRVDVVVGKGPGATSIPLEVAPFTLVGATTRSGALTGPLRDRFGFTAHMDFY 192

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           E  +L+ I+ R A + G+ + +EA  EIA RSRGTPRIA RLLRRVRD+AEV     ITR
Sbjct: 193 EPHELQLILLRSAGILGIELGEEAGAEIAGRSRGTPRIANRLLRRVRDYAEVRADGIITR 252

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           EIA AAL    +D +G D+LD   L  + R+FGGGPVG+ T++  + E    +E++ EP+
Sbjct: 253 EIAQAALAVYDVDPLGLDRLDRAVLGALVRSFGGGPVGVSTLAVAVGEEPSTVEEVCEPF 312

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           +++ G I RTPRGR+    AW  LG+  P
Sbjct: 313 LVRAGMIARTPRGRVATAAAWAQLGLTPP 341


>gi|294101861|ref|YP_003553719.1| Holliday junction DNA helicase RuvB [Aminobacterium colombiense DSM
           12261]
 gi|293616841|gb|ADE56995.1| Holliday junction DNA helicase RuvB [Aminobacterium colombiense DSM
           12261]
          Length = 352

 Score =  322 bits (825), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 168/312 (53%), Positives = 223/312 (71%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP +L++F GQ +    L ++++AA+ R EALDH+LF GPPGLGKTTLA ++A E+G  
Sbjct: 22  LRPSSLQDFVGQQKLKDKLSIYVQAARQRKEALDHILFYGPPGLGKTTLAGIIAHEMGGQ 81

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R T+GP + KAGD+AA+L+NLE  DVLFIDEIHRL   VEEILYP+MEDF L ++VG+G
Sbjct: 82  LRVTTGPALEKAGDIAAILSNLEPFDVLFIDEIHRLPANVEEILYPSMEDFSLHIIVGKG 141

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P A ++ + L  FTL+ ATTR+GLLT+PL+ RFGI  +L  Y +++   IVQRGAK+ G+
Sbjct: 142 PLANNICLTLPPFTLVGATTRLGLLTSPLRARFGIVEQLALYNVDETSEIVQRGAKVLGI 201

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + +EAA EIA RSRGTPR+A RLL+RVRD AEV  + +I   +A  AL  L +D +G D
Sbjct: 202 EIEEEAAYEIARRSRGTPRVAIRLLKRVRDVAEVRQSPSINTAVASVALNMLGLDTLGLD 261

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             D R L +I   F GGPVG+ TI+A L+E    IED+ EPY+IQ+G I+RTPRGR    
Sbjct: 262 DGDRRILQVIVELFDGGPVGLSTIAAALNEEGQTIEDIYEPYLIQKGLIERTPRGRKATR 321

Query: 322 IAWQHLGIDIPH 333
             + +LG + P 
Sbjct: 322 NGYLYLGKNPPE 333


>gi|307718816|ref|YP_003874348.1| holliday junction ATP-dependent DNA helicase RuvB [Spirochaeta
           thermophila DSM 6192]
 gi|306532541|gb|ADN02075.1| holliday junction ATP-dependent DNA helicase RuvB [Spirochaeta
           thermophila DSM 6192]
          Length = 342

 Score =  322 bits (825), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 164/316 (51%), Positives = 208/316 (65%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           +EDA    LRP +L EF G+ E   NL+VFI AA+ R EALDHV   GPPGLGKTTL  +
Sbjct: 11  EEDAQEERLRPLSLSEFQGKEEIKENLRVFIHAARQRGEALDHVFLSGPPGLGKTTLGSI 70

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +A ELGV  R TS P + K  DLA +LT L  R VLFIDEIHRL   +EE+LY AMED+ 
Sbjct: 71  IAHELGVELRITSAPALEKPKDLAGILTTLSPRSVLFIDEIHRLKPAIEEMLYVAMEDYV 130

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           +D ++G+GPSAR+V+I +  FTL+ ATT+ G L  PL  RFGI    N YE ED+  +++
Sbjct: 131 IDWIIGQGPSARTVRIPVPPFTLVGATTKAGKLATPLVSRFGITFHFNLYEKEDIIKVLR 190

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A++ GL V + A   ++  SRGTPRIA R+LRR RDFAEV     IT +I    + RL
Sbjct: 191 RSARILGLQVEEPAFDLLSSCSRGTPRIANRMLRRARDFAEVYGKGVITPQIVRLTMDRL 250

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            ID+ G +  D R L  I   F GGPVG E+++  L E  D +ED  EPY+IQ GF+QRT
Sbjct: 251 GIDEAGLEAHDRRILDTIITKFDGGPVGAESLAIALGESVDTLEDFYEPYLIQCGFLQRT 310

Query: 314 PRGRLLMPIAWQHLGI 329
           PRGR++ P  + HL I
Sbjct: 311 PRGRIVTPRGYDHLNI 326


>gi|172040616|ref|YP_001800330.1| Holliday junction DNA helicase RuvB [Corynebacterium urealyticum
           DSM 7109]
 gi|171851920|emb|CAQ04896.1| ruvB [Corynebacterium urealyticum DSM 7109]
          Length = 367

 Score =  322 bits (825), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 155/314 (49%), Positives = 222/314 (70%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           S LRP++L EF GQ +    L++ +  A++R  A DHVL  GPPGLGKTT+A ++A+ELG
Sbjct: 49  SSLRPKSLTEFIGQPKVRQQLELVLGGARSRGVAPDHVLLAGPPGLGKTTMAMIIAQELG 108

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
            + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++   EE+LY AMEDF++D++VG
Sbjct: 109 SSLRMTSGPALERAGDLAAMLSNLMEGDVLFIDEIHRMARPAEEMLYMAMEDFRIDVIVG 168

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199
           +GP A S+ I ++ FTL+ ATTR G+LT PL+DRFG   ++ FY+  +L  +V R A + 
Sbjct: 169 KGPGATSIPIEIAPFTLVGATTRAGMLTGPLRDRFGFTAQMEFYDTPELTRVVTRAAGIL 228

Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259
           G+ +  +AA EIA RSRGTPRIA RLLRRVRD+A+V     IT +IA  AL+   +D++G
Sbjct: 229 GVDIDSDAATEIASRSRGTPRIANRLLRRVRDYADVQADGRITVDIARQALVVFDVDEVG 288

Query: 260 FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLL 319
            D+LD   L  + R  GGGPVG+ T++  + E    +E++ EP++++ G + RTPRGR+ 
Sbjct: 289 LDRLDNGVLEALVRGHGGGPVGVNTLALAVGEEPSTVEEVCEPFLVRAGMVARTPRGRVA 348

Query: 320 MPIAWQHLGIDIPH 333
              AW+H+G++ P 
Sbjct: 349 TAAAWRHVGLEPPE 362


>gi|260583654|ref|ZP_05851402.1| holliday junction DNA helicase RuvB [Granulicatella elegans ATCC
           700633]
 gi|260158280|gb|EEW93348.1| holliday junction DNA helicase RuvB [Granulicatella elegans ATCC
           700633]
          Length = 332

 Score =  322 bits (825), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 159/307 (51%), Positives = 216/307 (70%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L+++ GQ +    L ++I+AA++R EALDHVL  GPPGLGKTTLA V+A EL V 
Sbjct: 23  LRPQNLQQYIGQQKVKEELSIYIQAARSRQEALDHVLLYGPPGLGKTTLAMVIANELEVG 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            ++TSGP I + GDL ALL +L   DVLFIDEIHRL  +VEE+LY AMEDF +D++VG+G
Sbjct: 83  IKTTSGPAIERPGDLVALLNDLNAGDVLFIDEIHRLPRVVEEMLYSAMEDFFVDIVVGQG 142

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+A  V   L  FTL+ ATTR G L+ PL+DRFGI   + +Y+ + L  IV+R A +   
Sbjct: 143 PTAHPVHFPLPPFTLVGATTRAGALSAPLRDRFGIVSHMEYYDEQSLTEIVKRTASVFES 202

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + +EAA E+A+RSRGTPRIA RLL+RVRDF++V     I++EI   AL  L +D+ G D
Sbjct: 203 EIHEEAAREVALRSRGTPRIANRLLKRVRDFSQVYEEGGISKEITQKALKVLQVDEKGLD 262

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   + GGPVG+  I+A +SE  + IED+ EPY++Q GFI+RT RGR++ P
Sbjct: 263 AIDRKLLNAMIDLYDGGPVGLGAIAANISEDAETIEDMYEPYLLQIGFIKRTSRGRMVTP 322

Query: 322 IAWQHLG 328
            A+ HL 
Sbjct: 323 EAYVHLN 329


>gi|225848850|ref|YP_002729014.1| holliday junction DNA helicase RuvB [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225643095|gb|ACN98145.1| holliday junction DNA helicase RuvB [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 324

 Score =  322 bits (824), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 159/314 (50%), Positives = 225/314 (71%), Gaps = 5/314 (1%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L++F GQ E    LKVFIEAAK + + LDHV+  GPPGLGKTTLA V+A E+G N
Sbjct: 8   VRPKFLDDFIGQDEVKRQLKVFIEAAKLKNKPLDHVILSGPPGLGKTTLASVIANEMGSN 67

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TS PV+ K GDL  LLT+L+D D+LFIDEIHRLS  +EEILY AMEDF++D+++G G
Sbjct: 68  IKITSAPVLEKKGDLIGLLTSLKDNDILFIDEIHRLSPSLEEILYSAMEDFKVDVILGGG 127

Query: 142 PS-----ARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA 196
                  A++++++L++FTLI ATTRVG+L++PL  RFGI + L+FY+ + L  I+ R A
Sbjct: 128 SGRKGRSAKAIRLDLAKFTLIGATTRVGMLSSPLMSRFGIVLNLDFYDEDSLSKIILRTA 187

Query: 197 KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAID 256
            +  + +T E A EIA  S+GTPRIA +LL RV D+A +   K I +E+A+ AL  L+I 
Sbjct: 188 TINNIPITQEGALEIAKHSKGTPRIANKLLSRVYDYAVIHGNKVIDKEVANQALRFLSIQ 247

Query: 257 KMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRG 316
           ++G D L L+YL  +   F GGPVG+ TIS  +SE +  IE++IEPY+++ GFI+RT +G
Sbjct: 248 ELGIDSLSLKYLKTLVIQFNGGPVGLNTISFAISEDKRTIEEVIEPYLLKIGFIKRTAKG 307

Query: 317 RLLMPIAWQHLGID 330
           R+ +  A++ L +D
Sbjct: 308 RVALKPAFEFLNLD 321


>gi|188996117|ref|YP_001930368.1| Holliday junction DNA helicase RuvB [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188931184|gb|ACD65814.1| Holliday junction DNA helicase RuvB [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 324

 Score =  322 bits (824), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 157/311 (50%), Positives = 220/311 (70%), Gaps = 5/311 (1%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  L++F GQ E    LKVFIEA K + + LDH +  GPPGLGKTTLA ++A EL  N
Sbjct: 8   IRPLKLDDFIGQEEVKKQLKVFIEACKIQGKTLDHTILSGPPGLGKTTLATIIANELATN 67

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TS PV+ K GDL  LLT+L++ D+LFIDEIHRL+  +EEILY AMEDF++D++VG G
Sbjct: 68  IKITSAPVLEKKGDLIGLLTSLKEGDILFIDEIHRLTPTLEEILYSAMEDFKVDVIVGGG 127

Query: 142 P-----SARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA 196
                 SA+++++++++FTLI ATTR+G+L+ PL  RFGI + L+FY+ + LK I+ R A
Sbjct: 128 SNRKARSAKAIRLDINKFTLIGATTRIGMLSTPLISRFGIILNLDFYDQQSLKEIILRSA 187

Query: 197 KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAID 256
           K+  + +T+E A EIA  S+GTPRIA +LL+RV D+A +     I RE A  AL  L+I 
Sbjct: 188 KILNINITEEGALEIAKHSKGTPRIANKLLKRVYDYAVIHKKDVIDRETAFDALRFLSIG 247

Query: 257 KMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRG 316
           K G D L L+YL  +   F GGPVG+ TIS  +SE +  IE++IEPY+++ GFI+RT +G
Sbjct: 248 KDGIDGLSLKYLKSLVYQFNGGPVGLNTISFAISEDKRTIEEVIEPYLLKLGFIKRTAKG 307

Query: 317 RLLMPIAWQHL 327
           R+ +P A ++L
Sbjct: 308 RVALPTAVEYL 318


>gi|258653555|ref|YP_003202711.1| Holliday junction DNA helicase RuvB [Nakamurella multipartita DSM
           44233]
 gi|258556780|gb|ACV79722.1| Holliday junction DNA helicase RuvB [Nakamurella multipartita DSM
           44233]
          Length = 370

 Score =  322 bits (824), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 157/326 (48%), Positives = 227/326 (69%), Gaps = 1/326 (0%)

Query: 5   EGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           EG+++      D+D+ + LRPR+++EF GQ +    L++ +  AK R    DHVL  GPP
Sbjct: 23  EGVVTPGQVPGDSDVEASLRPRSMDEFVGQEKVREQLQLVLAGAKLRGTPPDHVLLAGPP 82

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKT+L+ ++A ELG   R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++   EE
Sbjct: 83  GLGKTSLSMIIAAELGAALRLTSGPALERAGDLAAILSNLVEGDVLFIDEIHRIARPAEE 142

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LY AMEDF++D+MVG+GP A S+ ++++ FTL+ ATTR G LT PL+DRFG    + FY
Sbjct: 143 MLYLAMEDFRVDVMVGKGPGATSIPLDIAPFTLVGATTRSGQLTGPLRDRFGFTAHMEFY 202

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
             ++L  ++ R A + G+ +  + A EIA RSRGTPRIA RLLRRVRD+A+V     IT 
Sbjct: 203 SADELTIVISRSAAILGIELRPDGAAEIARRSRGTPRIANRLLRRVRDYAQVRADGAITL 262

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           ++A AAL    +D+MG D+LD   L+++ R+FGGGPVG+ T++  + E    +E++ EP+
Sbjct: 263 DVARAALAVYDVDEMGLDRLDRAVLSVLCRSFGGGPVGLTTLAVAVGEEPSTVEEVCEPF 322

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGI 329
           +++ G + RT RGR+  P AW HLG+
Sbjct: 323 LVRIGMLARTARGRVATPAAWDHLGL 348


>gi|297205605|ref|ZP_06923001.1| crossover junction ATP-dependent DNA helicase RuvB [Lactobacillus
           jensenii JV-V16]
 gi|297150183|gb|EFH30480.1| crossover junction ATP-dependent DNA helicase RuvB [Lactobacillus
           jensenii JV-V16]
          Length = 336

 Score =  322 bits (824), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 159/311 (51%), Positives = 215/311 (69%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP++  ++ GQ    S ++++I+AAK R EALDHVL  GPPGLGKTT+A V+A ELGVN
Sbjct: 23  LRPQSFSQYIGQKRVKSEMEIYIQAAKKRDEALDHVLLYGPPGLGKTTMAFVIANELGVN 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            ++TSGP I +AGDL ALL++L+  DVLFIDEIHRL+  +EEILY AMED+ +D++VGEG
Sbjct: 83  LKNTSGPAIERAGDLVALLSDLDPGDVLFIDEIHRLAKPIEEILYSAMEDYYVDIVVGEG 142

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            ++ +V + L  FTLI ATTR G L+ PL+DRFGI   + +Y I DL+ I+QR +++   
Sbjct: 143 STSHAVHVPLPPFTLIGATTRAGDLSAPLRDRFGIVEHMQYYTIGDLEKIIQRSSEVFAT 202

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  EAA E+A RSRGTPR+A RLL+RVRD+A+V     I+      AL +L +D  G D
Sbjct: 203 KIGKEAAHELARRSRGTPRVANRLLKRVRDYAQVKEENKISLATTKYALDQLQVDNEGLD 262

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             D + L  I   + GGPVGI T++A + E  D IE + EPY++Q  FI  TPRGR+   
Sbjct: 263 LTDRKILRTIIEAYHGGPVGIRTLAANIGEDTDTIEAVYEPYLLQHKFITMTPRGRVATQ 322

Query: 322 IAWQHLGIDIP 332
            A+  LGI +P
Sbjct: 323 KAYLQLGIPLP 333


>gi|226306412|ref|YP_002766372.1| Holliday junction DNA helicase RuvB [Rhodococcus erythropolis PR4]
 gi|259495675|sp|C0ZZ48|RUVB_RHOE4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|226185529|dbj|BAH33633.1| Holliday junction DNA helicase RuvB [Rhodococcus erythropolis PR4]
          Length = 365

 Score =  322 bits (824), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 159/332 (47%), Positives = 227/332 (68%), Gaps = 1/332 (0%)

Query: 2   MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
            D E  +S  +   D D+ + LRP++L++F GQ      L++ +  AK R    DH+L  
Sbjct: 9   FDDESQVSAELVAGDGDVEASLRPKSLDDFIGQPRVREQLQLVLTGAKLRGSTPDHILMS 68

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKT++A ++A ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++  
Sbjct: 69  GPPGLGKTSMAMIIAGELGSSLRLTSGPALERAGDLAAMLSNLVEGDVLFIDEIHRIARP 128

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            EE+LY AMEDF++D++VG+GP A S+ + ++ FTL+ ATTR G LT PL+DRFG    +
Sbjct: 129 AEEMLYLAMEDFRVDVVVGKGPGATSIPLEVAPFTLVGATTRSGALTGPLRDRFGFTAHM 188

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           +FYE E+L+ I+ R A + G+ +  +A  EIA RSRGTPRIA RLLRRVRDFAEV     
Sbjct: 189 DFYEPEELQQILMRSAGILGVNLEVDAGAEIARRSRGTPRIANRLLRRVRDFAEVRADGI 248

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +T ++A AAL    +D++G D+LD   L+ + R+FGGGPVG+ T++  + E    +E++ 
Sbjct: 249 VTMDVAQAALAVYDVDQLGLDRLDRSVLSALVRSFGGGPVGVSTLAVAVGEEPSTVEEVC 308

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EP++++ G I RTPRGR+    AW  LG+  P
Sbjct: 309 EPFLVRAGMIARTPRGRVATAAAWTQLGMTPP 340


>gi|291008206|ref|ZP_06566179.1| Holliday junction DNA helicase RuvB [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 363

 Score =  321 bits (823), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 159/324 (49%), Positives = 222/324 (68%), Gaps = 1/324 (0%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           +  +++D + +L RPR L EF GQ      L++ +  A  R +  DHVLF GPPGLGKT+
Sbjct: 26  QETAEQDVETTL-RPRRLSEFVGQARVREQLELVLHGALNRGDQPDHVLFSGPPGLGKTS 84

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           LA ++A ELG + R TSGP + + GDLAA+L+NL + DVLFIDEIHR++   EE+LY AM
Sbjct: 85  LAMIIAAELGASIRVTSGPALERPGDLAAMLSNLAEGDVLFIDEIHRIARPAEEMLYLAM 144

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           ED+++D++VG+GP A S+ + ++ FTL+ ATTR G LT PL+DRFG    + FYE  +L+
Sbjct: 145 EDYRVDIVVGKGPGATSIPLEIAPFTLVGATTRSGALTGPLRDRFGFTAHMEFYEPAELE 204

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            +V+R A + G+ + DE A EIA RSRGTPRIA RLLRRVRDFAEV     +T ++A AA
Sbjct: 205 LVVRRSAGILGVDLRDEGAVEIARRSRGTPRIANRLLRRVRDFAEVRADGAVTLDVARAA 264

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           L    +D+ G D+LD   L  + R+F GGPVG+ T++  + E    +E++ EPY+++ G 
Sbjct: 265 LEVYDVDEHGLDRLDRAVLGALVRSFNGGPVGVSTLAVAVGEEPTTVEEVCEPYLVRAGM 324

Query: 310 IQRTPRGRLLMPIAWQHLGIDIPH 333
           + RTPRGR+    AWQHLG+  P 
Sbjct: 325 LARTPRGRVATVAAWQHLGLVPPQ 348


>gi|330466912|ref|YP_004404655.1| Holliday junction DNA helicase RuvB [Verrucosispora maris
           AB-18-032]
 gi|328809883|gb|AEB44055.1| Holliday junction DNA helicase RuvB [Verrucosispora maris
           AB-18-032]
          Length = 356

 Score =  321 bits (823), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 161/331 (48%), Positives = 228/331 (68%), Gaps = 3/331 (0%)

Query: 5   EGLLSR--NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
            GL+S   N ++ DA++S+ RP+ L+EF  Q      L + ++ A  R    DH+L  GP
Sbjct: 6   NGLVSAYVNDAERDAEVSV-RPKRLDEFIAQHRVRDQLDLLLQGAMRRGSPPDHILLSGP 64

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA +VA ELG   R TSGP I ++GDLAA+LT+L + DVLFIDEIHR++   E
Sbjct: 65  PGLGKTTLANIVAAELGAGIRVTSGPAIERSGDLAAILTSLAEGDVLFIDEIHRIAKPAE 124

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LY AMEDF++D++VG+GP A ++ +++  FTL+ ATTR GLLT P++DRFG    L+F
Sbjct: 125 ELLYSAMEDFRVDVVVGKGPGATAIPLDVEPFTLVGATTRSGLLTGPMRDRFGFVAHLDF 184

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y   DL+T++ R A++ G+ +TD+ A EIA RSRGTPRIA RLLRRVRD+AEV     +T
Sbjct: 185 YAPADLETLLHRSARILGVPITDDGAAEIAGRSRGTPRIANRLLRRVRDYAEVRADGVVT 244

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            + A +AL    +D +G D+LD   LT +  +F GGPVG+ T++  + E  D +E++ EP
Sbjct: 245 LDTARSALTVYDVDALGLDRLDRAVLTALVDSFRGGPVGLSTLAVAVGEQPDTVEEVCEP 304

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           ++++ G + RTPRGR+    AW+HLG   P+
Sbjct: 305 FLVRAGLLARTPRGRVATEAAWRHLGRTPPN 335


>gi|300787172|ref|YP_003767463.1| holliday junction DNA helicase RuvB [Amycolatopsis mediterranei
           U32]
 gi|299796686|gb|ADJ47061.1| holliday junction DNA helicase RuvB [Amycolatopsis mediterranei
           U32]
          Length = 350

 Score =  321 bits (823), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 164/338 (48%), Positives = 229/338 (67%), Gaps = 5/338 (1%)

Query: 2   MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M+ E  LS  V   + ++   LRPR L+EF GQ      L++ +E+A+ R    DHVL  
Sbjct: 1   MEEEEALSAWVQTGEENVEGTLRPRKLDEFVGQPRVREQLELVLESARRRGVPPDHVLLS 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKT++A +VA ELG   R TSGP + +AGDLAA+L+NL   DVLFIDEIHR++  
Sbjct: 61  GPPGLGKTSMAMIVAAELGAAIRITSGPALERAGDLAAMLSNLAPGDVLFIDEIHRIARP 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            EE+LY AMEDF++D++VG+GP A S+ + ++ FTL+ ATTR G LT PL+DRFG   ++
Sbjct: 121 AEEMLYLAMEDFRVDVVVGKGPGATSIPLEIAPFTLVGATTRSGSLTGPLRDRFGFTGQM 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY   +L+ +V+R A +  + +  +   EIA RSRGTPRIA RLLRRVRD+AEV     
Sbjct: 181 EFYTDAELELVVRRAATILDIPIDRDGCAEIAGRSRGTPRIANRLLRRVRDYAEVRADGK 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +TR++A AAL    +D++G D+LD   LT + R+FGGGPVGI T++  + E    +E++ 
Sbjct: 241 VTRDVARAALAVYDVDELGLDRLDRAVLTALTRSFGGGPVGISTLAVAVGEEATTVEEVC 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGI----DIPHR 334
           EPY+++ G + RTPRGR+    AW+HLG+    D+P R
Sbjct: 301 EPYLVRAGMLARTPRGRVATATAWEHLGLVPPADLPGR 338


>gi|295112190|emb|CBL28940.1| Holliday junction DNA helicase subunit RuvB [Synergistetes
           bacterium SGP1]
          Length = 358

 Score =  321 bits (823), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 164/322 (50%), Positives = 224/322 (69%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           S   A+ + +RPR L +F GQ      L+++I+AA+ R E LDHVLF GPPGLGKTTLA+
Sbjct: 20  SPRAAEDATVRPRALADFIGQERVREKLRIYIDAARGRGEPLDHVLFYGPPGLGKTTLAE 79

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++A+E+G   R T+GP + +AGDLAA+++NLE  DVLFIDEIH +   VEEILYPAMEDF
Sbjct: 80  IIAQEMGGQLRKTTGPALERAGDLAAIVSNLEANDVLFIDEIHSMPRQVEEILYPAMEDF 139

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           +L ++VG+GP A+++ + L RFTL  ATTR+GLLT+PL+ RFGI  +L+ Y  ++L  IV
Sbjct: 140 ELHIVVGKGPLAKTIGLALPRFTLCGATTRLGLLTSPLRARFGIVEQLSLYTEQELARIV 199

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R A + G+ +  +AA EIA R+RGTPR+  +LLRRVRD A V     I  +IAD A+  
Sbjct: 200 LRAAGVLGIRIAGDAAIEIARRARGTPRVVLKLLRRVRDVASVKGTGEIDADIADRAMNM 259

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L ID  G D+ D + L  +   F GGPVG+ TI+A ++E    IED+ EPY+IQ+GF++R
Sbjct: 260 LDIDAEGMDEGDRQILRAVVERFDGGPVGLGTIAAAINEEPQTIEDIYEPYLIQKGFLER 319

Query: 313 TPRGRLLMPIAWQHLGIDIPHR 334
           TPRGR     A+ +LG  +  R
Sbjct: 320 TPRGRRATSNAYAYLGCPMRRR 341


>gi|134098597|ref|YP_001104258.1| Holliday junction DNA helicase RuvB [Saccharopolyspora erythraea
           NRRL 2338]
 gi|172044126|sp|A4FBA8|RUVB_SACEN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|133911220|emb|CAM01333.1| Holliday junction DNA helicase RuvB [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 353

 Score =  321 bits (823), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 159/324 (49%), Positives = 222/324 (68%), Gaps = 1/324 (0%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           +  +++D + +L RPR L EF GQ      L++ +  A  R +  DHVLF GPPGLGKT+
Sbjct: 16  QETAEQDVETTL-RPRRLSEFVGQARVREQLELVLHGALNRGDQPDHVLFSGPPGLGKTS 74

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           LA ++A ELG + R TSGP + + GDLAA+L+NL + DVLFIDEIHR++   EE+LY AM
Sbjct: 75  LAMIIAAELGASIRVTSGPALERPGDLAAMLSNLAEGDVLFIDEIHRIARPAEEMLYLAM 134

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           ED+++D++VG+GP A S+ + ++ FTL+ ATTR G LT PL+DRFG    + FYE  +L+
Sbjct: 135 EDYRVDIVVGKGPGATSIPLEIAPFTLVGATTRSGALTGPLRDRFGFTAHMEFYEPAELE 194

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            +V+R A + G+ + DE A EIA RSRGTPRIA RLLRRVRDFAEV     +T ++A AA
Sbjct: 195 LVVRRSAGILGVDLRDEGAVEIARRSRGTPRIANRLLRRVRDFAEVRADGAVTLDVARAA 254

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           L    +D+ G D+LD   L  + R+F GGPVG+ T++  + E    +E++ EPY+++ G 
Sbjct: 255 LEVYDVDEHGLDRLDRAVLGALVRSFNGGPVGVSTLAVAVGEEPTTVEEVCEPYLVRAGM 314

Query: 310 IQRTPRGRLLMPIAWQHLGIDIPH 333
           + RTPRGR+    AWQHLG+  P 
Sbjct: 315 LARTPRGRVATVAAWQHLGLVPPQ 338


>gi|159029417|emb|CAO90793.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 362

 Score =  321 bits (823), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 159/327 (48%), Positives = 228/327 (69%), Gaps = 2/327 (0%)

Query: 5   EGLLSRNVSQEDADIS--LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           E LL+ N + E+ + +   +RP++LE++ GQ +  +NLKV I AAKAR EA+DH+LF GP
Sbjct: 19  ENLLTPNPTIEETEKAEAQIRPQSLEDYIGQQDLKANLKVTIAAAKARQEAIDHLLFYGP 78

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTT+A ++A ++GVN R T+ P + +  D+  +L NL+ RD+LFIDEIHRL+ + E
Sbjct: 79  PGLGKTTMALILAAQMGVNCRITAAPALERPRDITGILINLQPRDILFIDEIHRLNRVTE 138

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMED++LD+ +G+G +A+   I+L  FTLI ATT+VG LT PL+DRFG+  RL F
Sbjct: 139 ELLYPAMEDYRLDVTIGKGQAAKIRSISLPPFTLIGATTKVGSLTAPLRDRFGMIQRLRF 198

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y +E+L  I+ R A +  + +T+  A EIA RSRGTPRIA RLL+RVRD+ +V     IT
Sbjct: 199 YTVEELTAIMLRSATIFNIPITEAGAIEIARRSRGTPRIANRLLKRVRDYVQVKGETIIT 258

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            ++A   L +L +D MG D  D   L  +   F G PVG+E ++A   E    IE++ EP
Sbjct: 259 PQLAAEGLNQLNVDSMGLDWTDRLVLKTMIEQFQGKPVGLEAVAAATGEDAKTIEEVYEP 318

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           Y++Q G++ RTPRGR++   A++HLG+
Sbjct: 319 YLLQIGYLHRTPRGRVVTAAAYEHLGL 345


>gi|313884066|ref|ZP_07817832.1| Holliday junction DNA helicase RuvB [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312620513|gb|EFR31936.1| Holliday junction DNA helicase RuvB [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 343

 Score =  321 bits (823), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 157/309 (50%), Positives = 213/309 (68%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E+ GQ +    L ++I+AA+ R EALDHVL  GPPGLGKTTLA V+A EL V 
Sbjct: 28  LRPKFLREYIGQNKVKEALAIYIQAARQRQEALDHVLLYGPPGLGKTTLAMVIANELEVG 87

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            ++TSGP I + GDL ALL  L   D+LFIDEIHRL  +VEE+LY AMED+ +D++VG+G
Sbjct: 88  IQTTSGPAIERPGDLIALLNELNPGDILFIDEIHRLPRVVEEVLYSAMEDYFVDIVVGQG 147

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            +++ +   L  FTLI ATTR G+LT PL++RFGI + + +Y   DL+ IV+R A +  +
Sbjct: 148 STSQPIHFQLPPFTLIGATTRAGMLTQPLRERFGIVMHMEYYSQADLQLIVERSANIFDV 207

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  + A EI+ RSRGTPR+A R+LRRVRDFA+V H   IT+ +   AL  L ID  G D
Sbjct: 208 GIESQGALEISRRSRGTPRVANRILRRVRDFAQVKHDGVITQAVTQEALKLLEIDDKGLD 267

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           Q D + L  +   + GGPVG+ TI+  +SE    +ED+ EPY++Q GF+QRTPRGR++  
Sbjct: 268 QTDRKLLKAMIDLYQGGPVGLNTIAVNISEDIGTVEDMYEPYLLQIGFLQRTPRGRVVTR 327

Query: 322 IAWQHLGID 330
            A+ HL I+
Sbjct: 328 QAYDHLKIE 336


>gi|238855609|ref|ZP_04645910.1| holliday junction DNA helicase RuvB [Lactobacillus jensenii 269-3]
 gi|260665331|ref|ZP_05866179.1| Holliday junction DNA helicase RuvB [Lactobacillus jensenii
           SJ-7A-US]
 gi|282933017|ref|ZP_06338411.1| holliday junction DNA helicase RuvB [Lactobacillus jensenii 208-1]
 gi|313473094|ref|ZP_07813578.1| holliday junction DNA helicase RuvB [Lactobacillus jensenii 1153]
 gi|238831753|gb|EEQ24089.1| holliday junction DNA helicase RuvB [Lactobacillus jensenii 269-3]
 gi|239528669|gb|EEQ67670.1| holliday junction DNA helicase RuvB [Lactobacillus jensenii 1153]
 gi|260560835|gb|EEX26811.1| Holliday junction DNA helicase RuvB [Lactobacillus jensenii
           SJ-7A-US]
 gi|281302871|gb|EFA95079.1| holliday junction DNA helicase RuvB [Lactobacillus jensenii 208-1]
          Length = 337

 Score =  321 bits (823), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 159/311 (51%), Positives = 215/311 (69%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP++  ++ GQ    S ++++I+AAK R EALDHVL  GPPGLGKTT+A V+A ELGVN
Sbjct: 24  LRPQSFSQYIGQKRVKSEMEIYIQAAKKRDEALDHVLLYGPPGLGKTTMAFVIANELGVN 83

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            ++TSGP I +AGDL ALL++L+  DVLFIDEIHRL+  +EEILY AMED+ +D++VGEG
Sbjct: 84  LKNTSGPAIERAGDLVALLSDLDPGDVLFIDEIHRLAKPIEEILYSAMEDYYVDIVVGEG 143

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            ++ +V + L  FTLI ATTR G L+ PL+DRFGI   + +Y I DL+ I+QR +++   
Sbjct: 144 STSHAVHVPLPPFTLIGATTRAGDLSAPLRDRFGIVEHMQYYTIGDLEKIIQRSSEVFST 203

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  EAA E+A RSRGTPR+A RLL+RVRD+A+V     I+      AL +L +D  G D
Sbjct: 204 KIGKEAAHELARRSRGTPRVANRLLKRVRDYAQVKEENKISLATTKYALDQLQVDNEGLD 263

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             D + L  I   + GGPVGI T++A + E  D IE + EPY++Q  FI  TPRGR+   
Sbjct: 264 LTDRKILRTIIEAYHGGPVGIRTLAANIGEDTDTIEAVYEPYLLQHKFITMTPRGRVATQ 323

Query: 322 IAWQHLGIDIP 332
            A+  LGI +P
Sbjct: 324 KAYLQLGIPLP 334


>gi|229491963|ref|ZP_04385780.1| holliday junction DNA helicase RuvB [Rhodococcus erythropolis
           SK121]
 gi|229321095|gb|EEN86899.1| holliday junction DNA helicase RuvB [Rhodococcus erythropolis
           SK121]
          Length = 365

 Score =  321 bits (823), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 159/332 (47%), Positives = 227/332 (68%), Gaps = 1/332 (0%)

Query: 2   MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
            D E  +S  +   D D+ + LRP++L++F GQ      L++ +  AK R    DH+L  
Sbjct: 9   FDDESQVSAELVAGDGDVEASLRPKSLDDFIGQPRVREQLQLVLTGAKLRGSTPDHILMS 68

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKT++A ++A ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++  
Sbjct: 69  GPPGLGKTSMAMIIAGELGSSLRLTSGPALERAGDLAAMLSNLVEGDVLFIDEIHRIARP 128

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            EE+LY AMEDF++D++VG+GP A S+ + ++ FTL+ ATTR G LT PL+DRFG    +
Sbjct: 129 AEEMLYLAMEDFRVDVVVGKGPGATSIPLEVAPFTLVGATTRSGALTGPLRDRFGFTAHM 188

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           +FYE E+L+ I+ R A + G+ +  +A  EIA RSRGTPRIA RLLRRVRDFAEV     
Sbjct: 189 DFYEPEELQQILMRSAGILGVDLEVDAGAEIARRSRGTPRIANRLLRRVRDFAEVRADGI 248

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +T ++A AAL    +D++G D+LD   L+ + R+FGGGPVG+ T++  + E    +E++ 
Sbjct: 249 VTMDVAQAALAVYDVDQLGLDRLDRSVLSALVRSFGGGPVGVSTLAVAVGEEPSTVEEVC 308

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EP++++ G I RTPRGR+    AW  LG+  P
Sbjct: 309 EPFLVRAGMIARTPRGRVATAAAWTQLGMTPP 340


>gi|194335811|ref|YP_002017605.1| Holliday junction DNA helicase RuvB [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|238693394|sp|B4SDZ7|RUVB_PELPB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|194308288|gb|ACF42988.1| Holliday junction DNA helicase RuvB [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 344

 Score =  321 bits (823), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 160/297 (53%), Positives = 211/297 (71%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  ++ F GQ     NL+VFI AAK R EALDHVL  GPPGLGKTTLA ++A E+G +
Sbjct: 21  IRPLRMDAFAGQQRLTDNLRVFISAAKMRGEALDHVLLSGPPGLGKTTLAYIIASEMGSS 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            +STSGP++ KAG+LA LLT L+  DVLFIDEIHR+   VEE LY AMEDF++D+M+  G
Sbjct: 81  IKSTSGPLLDKAGNLAGLLTGLQKGDVLFIDEIHRMPPTVEEYLYSAMEDFRIDIMLDSG 140

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSAR+V++ +  FTL+ ATTR GLLT+PL+ RFGI  R ++Y  E L+ I++R + + G+
Sbjct: 141 PSARAVQLRIEPFTLVGATTRSGLLTSPLRARFGINSRFDYYAPELLEGIIRRASTILGI 200

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  EAA EIA RSRGTPRIA RLLRR RDFA+V     I+R IA   L  L ID+ G D
Sbjct: 201 GIDAEAASEIAGRSRGTPRIANRLLRRARDFAQVDGESFISRSIAMKTLDCLEIDEEGLD 260

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRL 318
            +D + +  I   F GGPVGI +++  + E +D IE++ EPY+IQ G++ RT RGR+
Sbjct: 261 DMDKKIMETIVNKFNGGPVGIASLAVSVGEEQDTIEEVYEPYLIQAGYLTRTTRGRV 317


>gi|229817635|ref|ZP_04447917.1| hypothetical protein BIFANG_02905 [Bifidobacterium angulatum DSM
           20098]
 gi|229785424|gb|EEP21538.1| hypothetical protein BIFANG_02905 [Bifidobacterium angulatum DSM
           20098]
          Length = 353

 Score =  321 bits (822), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 161/321 (50%), Positives = 219/321 (68%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           S+ +  E      LRP  L+ F GQ +  + L++F++AA+ R    DH+L  GPPGLGKT
Sbjct: 22  SQPIGNEPVSDEELRPHVLDGFIGQPQLKAQLRLFLDAARKRETPPDHILLAGPPGLGKT 81

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           TLA +VA EL V  R TSGP I  AGDLA++L++LE  +VLF+DE+HRL    EE+LY A
Sbjct: 82  TLAMIVANELEVPIRITSGPAIQHAGDLASILSSLEPGEVLFVDEVHRLPRAAEELLYIA 141

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           MEDF++D+MVG+GP A S+ + L RFT+I ATTR G+L +PL+ RFG    L+FY  E+L
Sbjct: 142 MEDFRVDVMVGKGPGASSIPLTLPRFTMIGATTREGMLPSPLRARFGFTAHLDFYPHEEL 201

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           + +V+R A + GL +  EAA E+A+RSRGTPRIA RLLRRVRD+  V      + E    
Sbjct: 202 EKLVERSAGVLGLRIDREAAHELALRSRGTPRIANRLLRRVRDWVIVHDLPQASAEDVRQ 261

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL    ID  G D+LD+  L  I RNF GGPVG+ T++A + E  + +E + EPY++++G
Sbjct: 262 ALALYQIDAEGLDRLDIAVLNAIVRNFQGGPVGLNTLAAMVGEESETVETVCEPYLVREG 321

Query: 309 FIQRTPRGRLLMPIAWQHLGI 329
           F+ RTP+GR+  P AWQHLG+
Sbjct: 322 FLIRTPKGRVATPKAWQHLGM 342


>gi|269123851|ref|YP_003306428.1| Holliday junction DNA helicase RuvB [Streptobacillus moniliformis
           DSM 12112]
 gi|268315177|gb|ACZ01551.1| Holliday junction DNA helicase RuvB [Streptobacillus moniliformis
           DSM 12112]
          Length = 334

 Score =  321 bits (822), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 155/313 (49%), Positives = 215/313 (68%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +I+ LRP+  +++ GQ +    L + I+AAK R EALDH+L  GPPGLGKTT+A V+A E
Sbjct: 20  EINSLRPQLFKDYIGQEDLKETLSISIKAAKIRQEALDHILLFGPPGLGKTTMATVIANE 79

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           +G N + TSGPV+ KAGDL ++LT LED DVLFIDEIHRLS  +EEILY AMEDF++D+M
Sbjct: 80  MGTNIKITSGPVLEKAGDLVSILTTLEDGDVLFIDEIHRLSTNIEEILYSAMEDFKVDIM 139

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
           +G+G  A S ++ L RFTLI ATT  G L+ P +DRFGI  R+NFY  E+L  I+ R A 
Sbjct: 140 LGKGHGATSYRVELKRFTLIGATTMAGKLSKPFKDRFGIQHRMNFYTTEELMKIISRSAN 199

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257
           + G+   + +  +IA+RSRGTPR+A R+L+R RD+A V     I  EI    +  L +D 
Sbjct: 200 ILGVECRENSLRDIALRSRGTPRLANRVLKRSRDYATVNGNGIINDEIMKEVIRILKVDD 259

Query: 258 MGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317
            G D++D   L  I  N+ GGPVG+ET++  L E R  IE++ EPY+IQ G ++ + RGR
Sbjct: 260 RGLDEMDRSLLRSIIINYSGGPVGVETLATHLGEDRKTIEEVYEPYLIQLGLLKISLRGR 319

Query: 318 LLMPIAWQHLGID 330
            +  +A+ H+G++
Sbjct: 320 EVTDLAYTHMGLE 332


>gi|119486176|ref|ZP_01620236.1| Holliday junction DNA helicase [Lyngbya sp. PCC 8106]
 gi|119456667|gb|EAW37796.1| Holliday junction DNA helicase [Lyngbya sp. PCC 8106]
          Length = 374

 Score =  321 bits (822), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 161/312 (51%), Positives = 215/312 (68%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ + ++ GQ +    L++ I AAK+R E LDH+L  GPPGLGKTT+A ++A E+GV 
Sbjct: 56  IRPQRICDYIGQKDLKEVLEIAIAAAKSRNETLDHLLLYGPPGLGKTTMALILASEMGVT 115

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + T+ P I K  D+A LL NL+  ++LFIDEIHRLS + EEILYPAMED +LD+ +G+G
Sbjct: 116 CKITTAPAIEKPRDIAGLLVNLKPGEILFIDEIHRLSKMAEEILYPAMEDCRLDITIGQG 175

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            SA++  I L+ FT++ ATTR+G LT+PL+DRFG+  RL FYE+++L  IV+R AKL   
Sbjct: 176 RSAKTRSIPLTPFTIVGATTRIGALTSPLRDRFGLIQRLRFYEVDELSLIVERTAKLLNT 235

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  + A EIA RSRGTPRIA RLL+RVRD+ EV  +  IT EIA  AL    +D MG D
Sbjct: 236 PINPDGAEEIARRSRGTPRIANRLLKRVRDYVEVKASGPITGEIAATALQLFNVDPMGLD 295

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             D   L  +  NF GGPVG+ET++A   E    IE++ EPY++Q GF+QRT RGRL   
Sbjct: 296 WTDRHLLQKMIENFNGGPVGLETMAATTGEDAQTIEEVYEPYLMQIGFLQRTHRGRLATA 355

Query: 322 IAWQHLGIDIPH 333
            AW+HLG   P 
Sbjct: 356 SAWKHLGYSPPE 367


>gi|227503512|ref|ZP_03933561.1| crossover junction endodeoxyribonuclease [Corynebacterium accolens
           ATCC 49725]
 gi|227076015|gb|EEI13978.1| crossover junction endodeoxyribonuclease [Corynebacterium accolens
           ATCC 49725]
          Length = 359

 Score =  321 bits (822), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 159/340 (46%), Positives = 221/340 (65%), Gaps = 12/340 (3%)

Query: 5   EGLLSRNVSQEDADISL------------LRPRTLEEFTGQVEACSNLKVFIEAAKARAE 52
           EG+   + SQ ++D+              LRP++L EF GQ +    L + +  AK R  
Sbjct: 13  EGMSKAHESQHNSDVEATAHAEEHDIERSLRPKSLTEFIGQPKVREQLSLVLTGAKNRGV 72

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID 112
             DHVL  GPPGLGKTT+A ++++ELG + R TSGP + +AGDLAA+L+NL + DVLFID
Sbjct: 73  TPDHVLLSGPPGLGKTTMAMIISQELGTSLRMTSGPALERAGDLAAMLSNLMEGDVLFID 132

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           EIHR++   EE+LY AMEDF++D++VG+GP A S+ + +  FTL+ ATTR G+LT PL+D
Sbjct: 133 EIHRIARPAEEMLYMAMEDFRIDVIVGKGPGATSIPLEIPPFTLVGATTRAGMLTGPLRD 192

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           RFG   ++ +Y  EDL  +++R A +  +A+ D+AA EI  RSRGTPRIA RLLRRVRD+
Sbjct: 193 RFGFTAQMEYYSTEDLTRVIKRAAHILDVAIDDDAAVEIGSRSRGTPRIANRLLRRVRDY 252

Query: 233 AEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEP 292
           AEV     I    A  AL    +D+MG D+LD   L  +    GGGPVG+ T++  + E 
Sbjct: 253 AEVNGTGRIDLSAAQGALEVFDVDEMGLDRLDRAVLNALINGHGGGPVGVNTLAIAVGEE 312

Query: 293 RDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
              +E++ EPY+++ G I RT RGR+    AWQHLG+  P
Sbjct: 313 PSTVEEVCEPYLVRAGMISRTGRGRVATAAAWQHLGLTPP 352


>gi|238063871|ref|ZP_04608580.1| Holliday junction DNA helicase subunit ruvB [Micromonospora sp.
           ATCC 39149]
 gi|237885682|gb|EEP74510.1| Holliday junction DNA helicase subunit ruvB [Micromonospora sp.
           ATCC 39149]
          Length = 356

 Score =  320 bits (821), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 160/323 (49%), Positives = 223/323 (69%), Gaps = 1/323 (0%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           N ++ DA+ S+ RP+ LEEF  Q      L + + +A  R    DH+L  GPPGLGKTTL
Sbjct: 14  NDAERDAEASV-RPKRLEEFIAQHRVREQLDLLLRSAMRRGSPPDHILLSGPPGLGKTTL 72

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           A +VA ELG   R TSGP I ++GDLAA+LT+L + DVLFIDEIHR++   EE+LY AME
Sbjct: 73  ANIVAAELGAGIRVTSGPAIERSGDLAAILTSLGEGDVLFIDEIHRIAKPAEELLYSAME 132

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           DF++D++VG+GP A ++ +++  FTL+ ATTR GLLT P++DRFG    L+FY   DL+ 
Sbjct: 133 DFRVDVVVGKGPGATAIPLDVEPFTLVGATTRSGLLTGPMRDRFGFVAHLDFYSPADLEV 192

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           +++R A++ G+ +TD+ A EI+ RSRGTPRIA RLLRRVRDFAEV     +T E A AAL
Sbjct: 193 LLRRSARILGVPITDDGAVEISGRSRGTPRIANRLLRRVRDFAEVRADGVVTVETARAAL 252

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
               +D +G D+LD   LT +  +F GGPVG+ T++  + E  D +E++ EP++++ G +
Sbjct: 253 TVYDVDALGLDRLDRAVLTALVDSFRGGPVGLSTLAVAVGEQPDTVEEVCEPFLVRAGLL 312

Query: 311 QRTPRGRLLMPIAWQHLGIDIPH 333
            RTPRGR+    AW+HLG   P+
Sbjct: 313 ARTPRGRVATEAAWRHLGRTPPN 335


>gi|150021414|ref|YP_001306768.1| Holliday junction DNA helicase RuvB [Thermosipho melanesiensis
           BI429]
 gi|172048671|sp|A6LN82|RUVB_THEM4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|149793935|gb|ABR31383.1| Holliday junction DNA helicase RuvB [Thermosipho melanesiensis
           BI429]
          Length = 313

 Score =  320 bits (821), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 156/305 (51%), Positives = 216/305 (70%)

Query: 27  LEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTS 86
           + E+ GQ      L + I+A+K R EALDHVL VGPPGLGKTTLA +++ ELG N   TS
Sbjct: 1   MNEYIGQGNIKKRLGLAIKASKIRKEALDHVLLVGPPGLGKTTLAHIISNELGTNIHVTS 60

Query: 87  GPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARS 146
           GP++ K GD+AA+LTNLE  DVLFIDEIHR++  VEEILY AMEDFQ+D+++G+GPSARS
Sbjct: 61  GPILEKQGDVAAILTNLEHGDVLFIDEIHRMNRSVEEILYTAMEDFQIDILIGKGPSARS 120

Query: 147 VKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDE 206
           ++I+L  FTL+ ATTR GLL+ PL++RFG+ + L+FY I++L  I++R A +  + +  +
Sbjct: 121 IRIDLQPFTLVGATTRSGLLSAPLRNRFGLIMELDFYSIDELSKIIERAAIVLNVEIEKD 180

Query: 207 AACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLR 266
           AA  +A RSRGTPRIA RLLRRVRD + +     I   + +  +  L IDK G D+LD +
Sbjct: 181 AAILLAKRSRGTPRIALRLLRRVRDMSTIRGKVKIDIYMVEEIMFLLGIDKEGLDELDRK 240

Query: 267 YLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQH 326
            L  I   + GGPVG+++++A +    D+I ++ EPY++Q GFI RT RGR+    A+ H
Sbjct: 241 ILRTIIEVYNGGPVGVKSLAASVGISEDSISEVYEPYLLQSGFIARTHRGRIATKKAYNH 300

Query: 327 LGIDI 331
           LGI +
Sbjct: 301 LGIKV 305


>gi|256391549|ref|YP_003113113.1| Holliday junction DNA helicase RuvB [Catenulispora acidiphila DSM
           44928]
 gi|256357775|gb|ACU71272.1| Holliday junction DNA helicase RuvB [Catenulispora acidiphila DSM
           44928]
          Length = 337

 Score =  320 bits (820), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 160/320 (50%), Positives = 219/320 (68%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           ++E A  + LRP+ L EF GQ +    L + + AA+ R  A DH+L  GPPGLGKTTL+ 
Sbjct: 18  TEEQAADAALRPKRLAEFVGQPKVRDQLSLVLAAARMREAAPDHILLSGPPGLGKTTLSM 77

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++A EL V  R TSGP I  AGDLAA+L++L D +VLF+DEIHR+S   EE+LY AMEDF
Sbjct: 78  IIANELRVPIRITSGPAIQHAGDLAAILSSLADGEVLFVDEIHRMSRPAEEMLYMAMEDF 137

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           ++D++VG+GP A ++ + L  FTL+ ATTR GLL  PL+DRFG    L FY+  DL+ +V
Sbjct: 138 RVDVIVGKGPGATAIPLELPPFTLVGATTRSGLLPAPLRDRFGFTAHLEFYDAADLEHVV 197

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R A+L G+ +  EAA E+A RSRGTPRI  RLLRRVRD+AEV    T+T EIA AAL  
Sbjct: 198 NRSARLLGVRIVAEAAKELAGRSRGTPRIVNRLLRRVRDYAEVKADGTVTLEIARAALDV 257

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
             +D+ G D+LD   L  + + FGGGPVG+ T++  + E  + +E++ EP+++++G + R
Sbjct: 258 YEVDERGLDRLDRAVLHALLKLFGGGPVGLSTLAVAVGEESETVEEVAEPFLVREGLLAR 317

Query: 313 TPRGRLLMPIAWQHLGIDIP 332
           TPRGR+    AW H G+  P
Sbjct: 318 TPRGRIATAAAWAHFGLSAP 337


>gi|29833377|ref|NP_828011.1| Holliday junction DNA helicase RuvB [Streptomyces avermitilis
           MA-4680]
 gi|44888445|sp|Q820F3|RUVB_STRAW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|29610500|dbj|BAC74546.1| putative Holliday junction DNA helicase subunit A [Streptomyces
           avermitilis MA-4680]
          Length = 356

 Score =  320 bits (820), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 161/331 (48%), Positives = 224/331 (67%), Gaps = 1/331 (0%)

Query: 5   EGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E L+  +  +ED  + + LRP+ L+EF GQ +    L + + AA+AR    DHVL  G P
Sbjct: 13  ERLVGASADREDQAVEAALRPKDLDEFIGQEKVREQLDLVLRAARARGATSDHVLLSGAP 72

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTL+ ++A E+G   R TSGP I  AGDLAA+L++L++ +VLF+DEIHR+S   EE
Sbjct: 73  GLGKTTLSMIIAAEMGAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEE 132

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LY AMEDF++D++VG+GP A ++ + L  FTL+ ATTR GLL  PL+DRFG    + FY
Sbjct: 133 MLYMAMEDFRVDVIVGKGPGATAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTAHMEFY 192

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           E  +L+ ++ R A L  + +    A EIA RSRGTPRIA RLLRRVRD+A+V     ITR
Sbjct: 193 EPHELERVIHRSAGLLDVEIDSRGAAEIAGRSRGTPRIANRLLRRVRDYAQVKADGVITR 252

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           EIA AAL    +D  G D+LD   L  + + FGGGPVG+ T++  + E R+ +E++ EP+
Sbjct: 253 EIAAAALKVYEVDARGLDRLDRGVLEALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPF 312

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           ++++G + RTPRGR+  P AW HLG+  P R
Sbjct: 313 LVREGLLARTPRGRVATPAAWAHLGLTPPPR 343


>gi|269126345|ref|YP_003299715.1| Holliday junction DNA helicase RuvB [Thermomonospora curvata DSM
           43183]
 gi|268311303|gb|ACY97677.1| Holliday junction DNA helicase RuvB [Thermomonospora curvata DSM
           43183]
          Length = 353

 Score =  320 bits (820), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 162/335 (48%), Positives = 228/335 (68%), Gaps = 3/335 (0%)

Query: 1   MMDREGLLSRNVS---QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M D + L+S       +E A  + LRP+ L++F GQ      L + + +A  R    DHV
Sbjct: 1   MSDHDRLVSPRAGADGEERAIEAALRPKRLDDFVGQQRVREQLSLVLHSALRRGRTPDHV 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  G PGLGKTTLA ++A ELG   R TSGP I +AGDLAA+L+ L + +VLF+DEIHR+
Sbjct: 61  LLSGGPGLGKTTLAMIIAEELGKPLRITSGPAIERAGDLAAVLSTLSEGEVLFLDEIHRM 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           +   EE+LY AMEDF++D++VG+GP A ++ ++++ FTL+ ATTR G+L  PL+DRFG  
Sbjct: 121 ARPAEEMLYMAMEDFRVDVVVGKGPGATAIPLDIAPFTLVGATTRAGMLPGPLRDRFGFV 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
             ++FYE  +L+ I++R A+L G+ + D+ A EIA RSRGTPRIA RLLRRVRD+AEV  
Sbjct: 181 AHMDFYEPAELEIIIRRSARLLGVRIEDDGAAEIAARSRGTPRIANRLLRRVRDYAEVRA 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
              ITRE+A AAL    +D+ G D+LD   L  + R FGGGPVG+ T++  + E  + +E
Sbjct: 241 DGVITRELARAALTLYEVDERGLDRLDRAVLGALLRKFGGGPVGLSTLAVSVGEEPETVE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
            + EP++++QG + RTPRGR+  P AW+HLG+  P
Sbjct: 301 VVAEPFLVRQGLLARTPRGRIATPAAWRHLGLTPP 335


>gi|186684524|ref|YP_001867720.1| Holliday junction DNA helicase RuvB [Nostoc punctiforme PCC 73102]
 gi|238691198|sp|B2ITR9|RUVB_NOSP7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|186466976|gb|ACC82777.1| Holliday junction DNA helicase RuvB [Nostoc punctiforme PCC 73102]
          Length = 366

 Score =  320 bits (819), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 156/312 (50%), Positives = 215/312 (68%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP    ++ GQ +    L + I+AAK+R E LDH+L  GPPGLGKTT+A ++A E+GVN
Sbjct: 49  IRPHRFADYIGQKDLKDVLDIAIKAAKSRGEVLDHLLLYGPPGLGKTTMAMILASEMGVN 108

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           ++ TS P + +  D+  LL N++  D+LF+DEIHRLS + EEILYPAMED++LD+ +G+G
Sbjct: 109 YKITSAPALERPRDIVGLLVNMKPGDILFVDEIHRLSRMTEEILYPAMEDYRLDITIGKG 168

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            SAR   + LS+FTL+ ATTRVG LT+PL+DRFG+  +L FYE+++L  IV R A+L   
Sbjct: 169 SSARIRSLPLSKFTLVGATTRVGALTSPLRDRFGLIQKLRFYEVDELTQIVLRTAQLLKT 228

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            VT + A EIA RSRGTPRIA RLL+RVRD+AEV  +  I   IA  AL    +D  G D
Sbjct: 229 PVTQDGATEIARRSRGTPRIANRLLKRVRDYAEVKVSGVINESIASEALQLFQVDPCGLD 288

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             D + L++I   F GGPVG+ET++A   E    IE++ EPY++Q G++ RT RGR+   
Sbjct: 289 WTDRQMLSVIIEQFNGGPVGLETMAAATGEDTQTIEEVYEPYLMQIGYLTRTHRGRMATK 348

Query: 322 IAWQHLGIDIPH 333
            A++HLG   P+
Sbjct: 349 AAYKHLGFTPPN 360


>gi|332638255|ref|ZP_08417118.1| Holliday junction DNA helicase RuvB [Weissella cibaria KACC 11862]
          Length = 336

 Score =  320 bits (819), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 163/327 (49%), Positives = 221/327 (67%), Gaps = 5/327 (1%)

Query: 10  RNVSQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           R+ S E  + S+   LRP TL ++ GQ      L+V+I+AA+ R E LDHVL  GPPGLG
Sbjct: 7   RDTSAELGEESIEKSLRPSTLRQYIGQEPLKQRLQVYIQAARQREEPLDHVLLYGPPGLG 66

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTTLA V+A E+GV  R+TSGP I K+GDL ALL  L+  DVLFIDEIHR+   VEE+LY
Sbjct: 67  KTTLAMVIANEMGVGLRTTSGPAIEKSGDLLALLNELQPGDVLFIDEIHRMPKTVEEMLY 126

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            AMEDF +D++ GEGP+AR +   L  FTLI ATTR G+L+ PL+DRFGI   + +Y  +
Sbjct: 127 SAMEDFYVDIIAGEGPTARPIHFPLPPFTLIGATTRAGMLSQPLRDRFGIVEHMAYYNTD 186

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +L  I++R A +    +  + A E+A RSRGTPR+A RLLRRVRDFA V     I  ++ 
Sbjct: 187 ELAEIIKRSADIFDTEIQPDGAFELARRSRGTPRVANRLLRRVRDFAMVKDRDYIDDDMV 246

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           + +L  L +D+ G D++D + L  +   + GGPVG+ TI+A + E  D IE + EPY++Q
Sbjct: 247 NFSLDLLKVDEAGLDEVDHKILRTMIEFYQGGPVGVNTIAANIGEEVDTIESMYEPYLLQ 306

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            GF+QRTPRGR++   A+ HL  D+P+
Sbjct: 307 IGFLQRTPRGRVVTQAAYAHL--DLPY 331


>gi|257055538|ref|YP_003133370.1| Holliday junction DNA helicase subunit RuvB [Saccharomonospora
           viridis DSM 43017]
 gi|256585410|gb|ACU96543.1| Holliday junction DNA helicase subunit RuvB [Saccharomonospora
           viridis DSM 43017]
          Length = 374

 Score =  320 bits (819), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 156/313 (49%), Positives = 217/313 (69%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           + LRPRTL+ F GQ      L++ +E+A+ R    DHVL  GPPGLGKT+LA ++A EL 
Sbjct: 47  TTLRPRTLDSFVGQPRVREQLQLVLESARKRGVPPDHVLLSGPPGLGKTSLAMIIAAELD 106

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
            + R TSGP + KAGDLAA+L+NL + DVLFIDEIHR++   EE+LY AMEDF++D++VG
Sbjct: 107 TSIRITSGPALEKAGDLAAMLSNLAEGDVLFIDEIHRIARPAEEMLYLAMEDFRVDVVVG 166

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199
           +GP A S+ + +  FTL+ ATTR G LT PL+DRFG   ++ FY  E+L+ +++R A + 
Sbjct: 167 KGPGATSIPLEIPPFTLVGATTRSGALTGPLRDRFGFTGQMEFYTPEELEQVLKRSASIL 226

Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259
           G+A+ DE   EIA RSRGTPRIA RLLRRVRD+AEV      T  +  AAL    +D++G
Sbjct: 227 GIAIDDEGRAEIARRSRGTPRIANRLLRRVRDYAEVRADGVATLPVVRAALQVYDVDELG 286

Query: 260 FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLL 319
            D+LD   L  + R+F GGPVG+ T++  + E    +E++ EPY+++ G + RTPRGR+ 
Sbjct: 287 LDRLDRAVLDALVRSFNGGPVGVSTLAVAVGEEPTTVEEVCEPYLVRAGMLARTPRGRVA 346

Query: 320 MPIAWQHLGIDIP 332
             +AW+HLG+  P
Sbjct: 347 TALAWEHLGLQPP 359


>gi|225629667|ref|ZP_03787653.1| Holliday junction DNA helicase RuvB [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
 gi|225591479|gb|EEH12533.1| Holliday junction DNA helicase RuvB [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
          Length = 266

 Score =  319 bits (818), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 156/254 (61%), Positives = 201/254 (79%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           EDA    +RP  L++F GQ +   NLKVFI AA+ R EALDHVL  GPPGLGKTTLAQ+V
Sbjct: 12  EDARNINIRPEQLDDFVGQKDLIQNLKVFINAAQTRTEALDHVLLYGPPGLGKTTLAQIV 71

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           ++EL V+FR+TSGP+++KAGDLAA+LT L  +DVLFIDEIHRL+  +EE+LY AMEDF L
Sbjct: 72  SKELRVSFRATSGPLLSKAGDLAAVLTTLNAKDVLFIDEIHRLNRSIEEVLYTAMEDFCL 131

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D++VGEGPS R+++I+L  FTLI ATTR+GLL+ PL+DRFGIP+ L FY  E+L  I++R
Sbjct: 132 DILVGEGPSTRTLRIDLPPFTLIGATTRLGLLSAPLRDRFGIPLHLEFYSFEELVNIIKR 191

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
           GA++    + ++AA EIA R+RGTPRIA RLLRR+RDF EV   K IT E+AD+ LL+L 
Sbjct: 192 GARVLSAEIEEDAAREIACRARGTPRIALRLLRRIRDFVEVKDDKKITYEVADSVLLKLG 251

Query: 255 IDKMGFDQLDLRYL 268
           +DKMG ++LD+ YL
Sbjct: 252 VDKMGLNKLDMNYL 265


>gi|312196178|ref|YP_004016239.1| Holliday junction DNA helicase RuvB [Frankia sp. EuI1c]
 gi|311227514|gb|ADP80369.1| Holliday junction DNA helicase RuvB [Frankia sp. EuI1c]
          Length = 362

 Score =  319 bits (818), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 156/311 (50%), Positives = 218/311 (70%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPRTL EF GQ +A   L + +  A+ R    DHVL  GPPGLGKT+LA ++A+EL V 
Sbjct: 22  LRPRTLAEFVGQRKAREQLSIMLAGARGRGRPPDHVLLSGPPGLGKTSLAMIIAQELAVP 81

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGP I +AGDL A+LT L   +VLFIDEIHR++   EE+LY AMEDF++D+++G+G
Sbjct: 82  LRLTSGPAIERAGDLVAILTALAPGEVLFIDEIHRIARPAEELLYSAMEDFRVDVVLGKG 141

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P A ++ ++++ FTL+ ATTR GLLT P++DRFG    L+FY+ ++L  ++ R A+L G+
Sbjct: 142 PGATAIPLDVAPFTLVGATTRAGLLTGPMRDRFGFTAHLDFYDPDELVAVLARSARLLGV 201

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T E A E+A RSRGTPRIA RLLRRVRD+AEV     +T ++A AAL    +D +G D
Sbjct: 202 ELTPEGATEVAGRSRGTPRIANRLLRRVRDYAEVRADGVVTLDVAHAALRVYDVDPLGLD 261

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           +LD   LT + + FGGGPVG+ T++  + E  + +ED+ EP++++ G + RT RGR+  P
Sbjct: 262 RLDRAVLTALVKRFGGGPVGLTTLAVSVGEEPETVEDVAEPFLLRAGLLVRTSRGRVATP 321

Query: 322 IAWQHLGIDIP 332
            A+ HLG D P
Sbjct: 322 AAFTHLGFDPP 332


>gi|240173174|ref|ZP_04751832.1| Holliday junction DNA helicase RuvB [Mycobacterium kansasii ATCC
           12478]
          Length = 347

 Score =  319 bits (817), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 167/330 (50%), Positives = 230/330 (69%), Gaps = 1/330 (0%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           DR+   +  V + D D SL RPR+L EF GQ      L++ IE A+ R    DH+L  GP
Sbjct: 6   DRDVSPALAVGEGDIDGSL-RPRSLREFIGQPRVREQLQLVIEGARNRGGTPDHILLSGP 64

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKT+LA ++A ELG + R TSGP + +AGDLAA+L+NL D DVLFIDEIHR++   E
Sbjct: 65  PGLGKTSLAMIIAGELGSSLRVTSGPALERAGDLAAMLSNLVDHDVLFIDEIHRIARPAE 124

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LY AMEDF++D++VG+GP A S+ + ++ FTL+ ATTR G LT PL+DRFG    ++F
Sbjct: 125 EMLYLAMEDFRVDVVVGKGPGATSIPLEIAPFTLVGATTRSGALTGPLRDRFGFTAHMDF 184

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           YE  +L+ ++ R A + G+ +  EAA EIA RSRGTPRIA RLLRRVRDFAEV     IT
Sbjct: 185 YEPAELERVLARSAGILGIQLGAEAAAEIARRSRGTPRIANRLLRRVRDFAEVRADGVIT 244

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           R++A AAL    +D++G D+LD   L+ + R+FGGGPVG+ T++  + E    +E++ EP
Sbjct: 245 RDVAKAALEVYDVDELGLDRLDRAVLSALTRSFGGGPVGVSTLAVAVGEEAATVEEVCEP 304

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++++ G + RTPRGR+   +AW HLG+  P
Sbjct: 305 FLVRAGMVARTPRGRVATALAWTHLGMSPP 334


>gi|306836239|ref|ZP_07469222.1| crossover junction ATP-dependent DNA helicase RuvB [Corynebacterium
           accolens ATCC 49726]
 gi|304567893|gb|EFM43475.1| crossover junction ATP-dependent DNA helicase RuvB [Corynebacterium
           accolens ATCC 49726]
          Length = 336

 Score =  318 bits (816), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 157/319 (49%), Positives = 215/319 (67%), Gaps = 1/319 (0%)

Query: 15  EDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           E+ DI   LRP++L EF GQ +    L + +  AK R    DHVL  GPPGLGKTT+A +
Sbjct: 11  EEHDIERSLRPKSLTEFIGQPKVREQLSLVLTGAKNRGVTPDHVLLSGPPGLGKTTMAMI 70

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +++ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++   EE+LY AMEDF+
Sbjct: 71  ISQELGTSLRMTSGPALERAGDLAAMLSNLMEGDVLFIDEIHRIARPAEEMLYMAMEDFR 130

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           +D++VG+GP A S+ + +  FTL+ ATTR G+LT PL+DRFG   ++ +Y  EDL  +++
Sbjct: 131 IDVIVGKGPGATSIPLEIPPFTLVGATTRAGMLTGPLRDRFGFTAQMEYYSTEDLTRVIK 190

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A +  +A+ D+AA EI  RSRGTPRIA RLLRRVRD+AEV     I    A  AL   
Sbjct: 191 RAAHILDVAIDDDAAVEIGSRSRGTPRIANRLLRRVRDYAEVNGTGRIDLSAAQGALEVF 250

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D+MG D+LD   L  +    GGGPVG+ T++  + E    +E++ EPY+++ G I RT
Sbjct: 251 DVDEMGLDRLDRAVLNALINGHGGGPVGVNTLAIAVGEEPSTVEEVCEPYLVRAGMISRT 310

Query: 314 PRGRLLMPIAWQHLGIDIP 332
            RGR+    AWQHLG+  P
Sbjct: 311 GRGRVATAAAWQHLGLTPP 329


>gi|315604283|ref|ZP_07879349.1| crossover junction ATP-dependent DNA helicase RuvB [Actinomyces sp.
           oral taxon 180 str. F0310]
 gi|315313989|gb|EFU62040.1| crossover junction ATP-dependent DNA helicase RuvB [Actinomyces sp.
           oral taxon 180 str. F0310]
          Length = 348

 Score =  318 bits (816), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 160/318 (50%), Positives = 215/318 (67%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E A  + LRPR L EF GQ      L++ ++AA+ R+   DHVL  GPPGLGKTTLA ++
Sbjct: 23  ERAAEAALRPRKLSEFVGQRVVRGQLQLVLDAARMRSATPDHVLLAGPPGLGKTTLAMII 82

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A E+G + R TSGP I  AGDLAA+L+ L++ D+LFIDEIHRL+   EE+LY AMEDF++
Sbjct: 83  AAEMGTSLRLTSGPAIQHAGDLAAILSGLQEGDILFIDEIHRLARTAEEMLYLAMEDFRV 142

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D++VG+GP A S+ + L  FT++ ATTR GLL  PL+DRFG    L FYE ++L+++V R
Sbjct: 143 DVVVGKGPGATSIPLTLPPFTVVGATTRSGLLPAPLRDRFGFTAHLEFYETDELQSVVTR 202

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A L G  +   AA EIA RSRGTPRIA RLLRRV D+A+V     +T + A  AL    
Sbjct: 203 SASLLGSPIDARAAHEIASRSRGTPRIANRLLRRVVDYAQVHGDGQLTLDAARGALELFE 262

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D  G D+LD   L  + R F GGPVG+ T+S  + E  + +E + EPY++++GF+ RT 
Sbjct: 263 VDPSGLDRLDRAVLEAVCRRFAGGPVGLTTLSVTIGEEAETVETVAEPYLVREGFLVRTN 322

Query: 315 RGRLLMPIAWQHLGIDIP 332
           RGR+  P+AW HLG+  P
Sbjct: 323 RGRMATPLAWSHLGLTPP 340


>gi|302866773|ref|YP_003835410.1| Holliday junction DNA helicase RuvB [Micromonospora aurantiaca ATCC
           27029]
 gi|315503188|ref|YP_004082075.1| holliday junction DNA helicase ruvb [Micromonospora sp. L5]
 gi|302569632|gb|ADL45834.1| Holliday junction DNA helicase RuvB [Micromonospora aurantiaca ATCC
           27029]
 gi|315409807|gb|ADU07924.1| Holliday junction DNA helicase RuvB [Micromonospora sp. L5]
          Length = 354

 Score =  318 bits (815), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 160/333 (48%), Positives = 224/333 (67%), Gaps = 1/333 (0%)

Query: 2   MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M  E L+S  V+  + D  + +RP+ L+EF  Q      L + ++ A  R    DH+L  
Sbjct: 1   MSGENLVSAYVNDAELDAEASVRPKRLDEFIAQHRVRDQLDLLLQGAMRRGSPPDHILLS 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA +VA ELG   R TSGP I ++GDLAA+LT L + DVLFIDEIHR++  
Sbjct: 61  GPPGLGKTTLANIVAAELGTGIRVTSGPAIERSGDLAAILTGLAEGDVLFIDEIHRIAKP 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            EE+LY AMEDF++D++VG+GP A ++ +++  FTL+ ATTR GLLT P++DRFG    L
Sbjct: 121 AEELLYSAMEDFRVDVVVGKGPGATAIPLDVEPFTLVGATTRSGLLTGPMRDRFGFVAHL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           +FY   DL+T++ R A++ G+ +T + A E+A RSRGTPRIA RLLRRVRD+AEV     
Sbjct: 181 DFYAPADLETLLHRSARILGVPITADGAAEVAGRSRGTPRIANRLLRRVRDYAEVRADGV 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +T E A AAL    +D +G D+LD   LT +  +F GGPVG+ T++  + E  D +E++ 
Sbjct: 241 VTLETARAALTVYDVDALGLDRLDRAVLTALVDSFRGGPVGLSTLAVAVGEQPDTVEEVC 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EP++++ G + RTPRGR+    AW+HLG   P+
Sbjct: 301 EPFLVRAGLLARTPRGRVATEAAWRHLGRTPPN 333


>gi|145594354|ref|YP_001158651.1| Holliday junction DNA helicase RuvB [Salinispora tropica CNB-440]
 gi|189046047|sp|A4X5X3|RUVB_SALTO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|145303691|gb|ABP54273.1| Holliday junction DNA helicase RuvB [Salinispora tropica CNB-440]
          Length = 354

 Score =  318 bits (815), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 159/328 (48%), Positives = 223/328 (67%), Gaps = 1/328 (0%)

Query: 2   MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M  + L+S  VS  + D+ + +RPR L EF  Q      L + ++ A  R    DH+L  
Sbjct: 1   MTGDNLVSAYVSDAERDVEASVRPRRLAEFIAQERVRDQLDLLLQGALRRGSPPDHILLS 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKT+LA +VA ELG + R TSGP I ++GDLAA+LT+L + DVLFIDE+HR++  
Sbjct: 61  GPPGLGKTSLANIVAAELGTSIRVTSGPAIERSGDLAAILTSLGEGDVLFIDEVHRIARP 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            EE+LY AMEDF++D++VG+GP A ++ +++  FTL+ ATTR GLLT P++DRFG    L
Sbjct: 121 AEELLYSAMEDFRVDVVVGKGPGATAIPLDVEPFTLVGATTRAGLLTGPMRDRFGFVAHL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           +FY   DL+T++ R A++ G+ +T + A EI+ R+RGTPRIA RLLRRVRDFAEV     
Sbjct: 181 DFYSPADLETLLNRSARILGVPITADGAAEISGRARGTPRIANRLLRRVRDFAEVRADGV 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +TRE A AAL    +D +G D+LD   LT +   F GGPVG+ T++  + E  D +E++ 
Sbjct: 241 VTRETAQAALTVYDVDALGLDRLDRAVLTALVDLFRGGPVGLSTLAVAVGEQPDTVEEVC 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
           EP++++ G + RTPRGR+    AW HLG
Sbjct: 301 EPFLVRAGLLARTPRGRVATEAAWHHLG 328


>gi|152966997|ref|YP_001362781.1| Holliday junction DNA helicase RuvB [Kineococcus radiotolerans
           SRS30216]
 gi|151361514|gb|ABS04517.1| Holliday junction DNA helicase RuvB [Kineococcus radiotolerans
           SRS30216]
          Length = 355

 Score =  318 bits (815), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 159/319 (49%), Positives = 220/319 (68%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           +E A  S LRP  L+EF GQ      L + ++AAKAR    DHVLF GPPGLGKTTLA +
Sbjct: 13  RERAAESALRPHGLDEFVGQKVVREQLALVLDAAKARGMPSDHVLFSGPPGLGKTTLAMI 72

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           VA E+G   R +SGP I  AGDLAA+L++L++ +VLF+DEIHR++   EE+LY AMED++
Sbjct: 73  VASEMGAPLRQSSGPAIQHAGDLAAVLSSLDEGEVLFLDEIHRMARPAEEMLYIAMEDYR 132

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           +D++VG+GP A ++ + L +FTL+ ATTR GLL  PL+DRFG    L+FY  E+L  +++
Sbjct: 133 VDVVVGKGPGATAIPLELPKFTLVGATTRAGLLPAPLRDRFGFTGYLDFYTPEELVKVLR 192

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A L G+ +T E A EI  RSRGTPRIA RLLRRVRD+A+V  +  + R  A AAL   
Sbjct: 193 RSASLLGVQLTAEGAAEIGGRSRGTPRIANRLLRRVRDWAQVRGSGIVDRHAARAALEVY 252

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D+ G D+LD   L  + R FGGGPVG+ T++  + E  + +E + EP+++++G + RT
Sbjct: 253 EVDERGLDRLDRAVLDALCRRFGGGPVGLSTLAVVVGEEAETVETVAEPFLVREGLLGRT 312

Query: 314 PRGRLLMPIAWQHLGIDIP 332
           PRGR+ +P  W HLG+  P
Sbjct: 313 PRGRIALPDTWAHLGLTPP 331


>gi|86607928|ref|YP_476690.1| Holliday junction DNA helicase RuvB [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|97190388|sp|Q2JP68|RUVB_SYNJB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|86556470|gb|ABD01427.1| Holliday junction DNA helicase RuvB [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 378

 Score =  318 bits (815), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 170/328 (51%), Positives = 220/328 (67%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           D   LL       +A    LRPRTL E+ GQ E    L + I AA+AR E LDH+LF GP
Sbjct: 42  DPSALLQPQAHPGEAQEESLRPRTLAEYIGQTELKEVLSIAIAAARARQEPLDHLLFYGP 101

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTT+A V+A E+G  F  T+ P +    D+A  L  L+  DVLFIDEIHRL  + E
Sbjct: 102 PGLGKTTVAAVLAAEMGSQFYMTTAPALESPRDIAGYLVRLKRGDVLFIDEIHRLPKVTE 161

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMEDF+LD+ +G+G SAR   + L RFTLI ATTR+G LT+PL+DRFG   RL F
Sbjct: 162 ELLYPAMEDFRLDITIGKGRSARITSLPLERFTLIGATTRIGALTSPLRDRFGHVQRLRF 221

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           YE  +L  IV R A+L  ++   E A EIA RSRGTPRIA RL +RVRD+A+V     I+
Sbjct: 222 YEPHELVQIVLRTARLLNVSTDPEGAAEIARRSRGTPRIANRLFKRVRDYAQVRGDGHIS 281

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           +E+A AAL    +D MG D +D + LT++   FGGGPVG+ET++A   E    IE++ EP
Sbjct: 282 QEVAAAALELFQVDPMGLDWIDRKLLTVLVEQFGGGPVGLETMAAVTGEDPQTIEEVYEP 341

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           Y++Q G++QRTPRGR++ P A +HLG +
Sbjct: 342 YLLQIGYLQRTPRGRVVTPAALRHLGYE 369


>gi|110597058|ref|ZP_01385347.1| Holliday junction DNA helicase RuvB [Chlorobium ferrooxidans DSM
           13031]
 gi|110341249|gb|EAT59714.1| Holliday junction DNA helicase RuvB [Chlorobium ferrooxidans DSM
           13031]
          Length = 351

 Score =  318 bits (815), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 160/297 (53%), Positives = 210/297 (70%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  + +F GQ     NLKVFI AAK R +ALDHVL  GPPGLGKTTLA ++A E+G +
Sbjct: 32  IRPLRMGDFAGQQRLTDNLKVFISAAKIRGDALDHVLLSGPPGLGKTTLAYIIASEMGGS 91

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            ++TSGP++ KAG+LA LLT L+  DVLFIDEIHR+   VEE LY AMEDF++D+M+  G
Sbjct: 92  IKATSGPLLDKAGNLAGLLTGLQKGDVLFIDEIHRMPPAVEEYLYSAMEDFRIDIMLDSG 151

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSAR+V++ +  FTLI ATTR GLLT+PL+ RFGI  R ++Y  E L+ I+ R + + G+
Sbjct: 152 PSARAVQLRIEPFTLIGATTRSGLLTSPLRARFGINSRFDYYSPELLEKIIVRASGILGI 211

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  EAA EIA RSRGTPRIA RLLRR RDFA+V     I R IA   L  L ID+ G D
Sbjct: 212 GIDGEAAKEIAGRSRGTPRIANRLLRRARDFAQVDSEALINRAIAMKTLECLEIDEEGLD 271

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRL 318
            +D + +  I   F GGPVGI +++  + E ++ IE++ EPY+IQ G++ RTPRGR+
Sbjct: 272 DMDKKIMETIVNKFNGGPVGIASLAVSVGEEQNTIEEVYEPYLIQAGYLTRTPRGRV 328


>gi|86606465|ref|YP_475228.1| Holliday junction DNA helicase RuvB [Synechococcus sp. JA-3-3Ab]
 gi|97189884|sp|Q2JTM7|RUVB1_SYNJA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB 1
 gi|86555007|gb|ABC99965.1| Holliday junction DNA helicase RuvB [Synechococcus sp. JA-3-3Ab]
          Length = 378

 Score =  318 bits (815), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 170/328 (51%), Positives = 220/328 (67%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           D   LL       +A    LRPRTL E+ GQ E    L + I AA+AR E LDH+LF GP
Sbjct: 42  DPSALLQPQAHPGEAQEESLRPRTLAEYIGQTELKEVLSIAIAAARARQEPLDHLLFYGP 101

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTT+A V+A E+G  F  T+ P +    D+A  L  L+  DVLFIDEIHRL  + E
Sbjct: 102 PGLGKTTVAAVLAAEMGSQFYMTTAPALESPRDIAGYLVRLKRGDVLFIDEIHRLPKVTE 161

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMEDF+LD+ +G+G SAR   + L RFTLI ATTR+G LT+PL+DRFG   RL F
Sbjct: 162 ELLYPAMEDFRLDITIGKGRSARITSLPLERFTLIGATTRIGALTSPLRDRFGHVQRLRF 221

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           YE  +L  IV R A+L  ++   E A EIA RSRGTPRIA RL +RVRD+A+V     I+
Sbjct: 222 YEPHELVQIVLRTARLLNVSTDPEGAAEIARRSRGTPRIANRLFKRVRDYAQVRGDGHIS 281

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           +E+A AAL    +D MG D +D + LT++   FGGGPVG+ET++A   E    IE++ EP
Sbjct: 282 QEVAAAALELFQVDPMGLDWIDRKLLTVLVEQFGGGPVGLETMAAVTGEDPQTIEEVYEP 341

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           Y++Q G++QRTPRGR++ P A +HLG +
Sbjct: 342 YLLQIGYLQRTPRGRVVTPAALRHLGYE 369


>gi|119511346|ref|ZP_01630459.1| Holliday junction DNA helicase RuvB [Nodularia spumigena CCY9414]
 gi|119463968|gb|EAW44892.1| Holliday junction DNA helicase RuvB [Nodularia spumigena CCY9414]
          Length = 367

 Score =  318 bits (814), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 154/312 (49%), Positives = 215/312 (68%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+   ++ GQ +    L + I+AAK+R E LDH+L  GPPGLGKTT+A ++A E+GV+
Sbjct: 50  IRPQQFADYIGQKDLKDVLDIAIKAAKSRGEVLDHLLLYGPPGLGKTTMAMILASEMGVD 109

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           ++ TS P + +  D+  LL NL+  DVLF+DEIHRLS + EEILYPAMED++LD+ VG+G
Sbjct: 110 YKITSAPALERPRDIVGLLVNLKPGDVLFVDEIHRLSRMTEEILYPAMEDYRLDITVGKG 169

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
             AR   I L++FTL+ ATTRVG L++PL+DRFG+  +L FYE+++L  IV R A     
Sbjct: 170 AGARIRSIPLNKFTLVGATTRVGALSSPLRDRFGLVQKLRFYEVDELTKIVLRSADFLKT 229

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + ++ A EIA R+RGTPRIA RLL+RVRD+AEV  +  IT  +A  AL    +D  G D
Sbjct: 230 PIAEDGATEIARRARGTPRIANRLLKRVRDYAEVKLSGEITEIVASEALQLFQVDPCGLD 289

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             D R L++I   F GGPVG+ET++A   E    IE++ EPY++Q G++ RTPRGR+   
Sbjct: 290 WTDRRMLSVIIEQFNGGPVGLETVAAATGEDTQTIEEVYEPYLMQIGYLSRTPRGRIATT 349

Query: 322 IAWQHLGIDIPH 333
            A++HLG   P+
Sbjct: 350 SAYKHLGFKPPN 361


>gi|260903851|ref|ZP_05912173.1| Holliday junction DNA helicase RuvB [Brevibacterium linens BL2]
          Length = 360

 Score =  317 bits (813), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 156/322 (48%), Positives = 223/322 (69%), Gaps = 1/322 (0%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
             ++ DA+ +L RP+ L++F GQ +    L + ++AAKAR  A DHVL  GPPGLGKTTL
Sbjct: 35  ETAERDAEAAL-RPKGLQDFIGQPQVREQLSLVLDAAKARNRAPDHVLLSGPPGLGKTTL 93

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           A ++A E+  + R TSGP +  AGDLAA+L++LE+ +VLFIDEIHR++   EE+LY AME
Sbjct: 94  AMIIAHEMQSSLRVTSGPAVQHAGDLAAILSSLEEGEVLFIDEIHRMARAAEEMLYVAME 153

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           DF++D++VG+GP A ++ ++L +FT++ ATTR GLL  PL+DRFG    L+FY   DL T
Sbjct: 154 DFRVDVIVGKGPGATAIPLDLPQFTMVGATTRSGLLPAPLRDRFGFTGLLDFYSSNDLLT 213

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           +++R A + G+        EI+ RSRGTPR+A RLLRRVRD+A+V     I    A +AL
Sbjct: 214 VLKRSAHMLGIEAELAGLKEISTRSRGTPRVANRLLRRVRDWAQVRGTGIIDEAAALSAL 273

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
               +D++G D+LD   L ++ + FGGGPVG+ TI+  + E  D +E + EPY++++G I
Sbjct: 274 KVYEVDELGLDRLDRSVLQVLCKRFGGGPVGLGTIAVSVGEEADTVETVSEPYLVREGLI 333

Query: 311 QRTPRGRLLMPIAWQHLGIDIP 332
            RTPRGR+    AW+HLG+ IP
Sbjct: 334 SRTPRGRVATSAAWKHLGMQIP 355


>gi|58697554|ref|ZP_00372791.1| Holliday junction DNA helicase RuvB [Wolbachia endosymbiont of
           Drosophila simulans]
 gi|58535961|gb|EAL59691.1| Holliday junction DNA helicase RuvB [Wolbachia endosymbiont of
           Drosophila simulans]
          Length = 264

 Score =  317 bits (813), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 152/246 (61%), Positives = 197/246 (80%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  L++F GQ +   NLKVFI AA+ R EALDHVL  GPPGLGKTTLAQ+V++EL V+
Sbjct: 19  IRPEQLDDFVGQKDLIQNLKVFINAAQTRTEALDHVLLYGPPGLGKTTLAQIVSKELRVS 78

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           FR+TSGP+++KAGDLAA+LT L  +DVLFIDEIHRL+  +EE+LY AMEDF LD++VGEG
Sbjct: 79  FRATSGPLLSKAGDLAAVLTTLNAKDVLFIDEIHRLNRSIEEVLYTAMEDFCLDILVGEG 138

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PS R+++I+L  FTLI ATTR+GLL+ PL+DRFGIP+ L FY  E+L  I++RGA++   
Sbjct: 139 PSTRTLRIDLPPFTLIGATTRLGLLSAPLRDRFGIPLHLEFYSFEELVNIIKRGARVLSA 198

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + ++AA EIA R+RGTPRIA RLLRR+RDF EV   K IT E+AD+ LL+L +DKMG +
Sbjct: 199 EIEEDAAREIACRARGTPRIALRLLRRIRDFVEVKDDKKITYEVADSVLLKLGVDKMGLN 258

Query: 262 QLDLRY 267
           +LD+ Y
Sbjct: 259 KLDMNY 264


>gi|222099902|ref|YP_002534470.1| Holliday junction ATP-dependent DNA helicase ruvB [Thermotoga
           neapolitana DSM 4359]
 gi|221572292|gb|ACM23104.1| Holliday junction ATP-dependent DNA helicase ruvB [Thermotoga
           neapolitana DSM 4359]
          Length = 358

 Score =  317 bits (813), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 163/327 (49%), Positives = 224/327 (68%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
            LS   +  D+ +  LRP++L+EF GQ +    L + ++AAK R E LDH+L  GPPGLG
Sbjct: 28  FLSPERTVYDSGVQFLRPKSLDEFIGQEKVKRKLSLALKAAKMRGEILDHILLAGPPGLG 87

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTTLA ++A E+  N   TSGPV+AK GD+AA+LT+LE  DVLFIDEIHRL+  VEE+LY
Sbjct: 88  KTTLAHIIASEMQTNIHITSGPVLAKQGDMAAILTSLERGDVLFIDEIHRLNKAVEEVLY 147

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            A+EDFQ+D+M+G+GPSA+S++I++  FTL+ ATTR GLL++PL+ RFG+ + L+FY  E
Sbjct: 148 SAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGMILELDFYTTE 207

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +LK IV+R A+L  + + +EAA  IA RSRGTPRIA RL +RVRD   V  A  I   I 
Sbjct: 208 ELKEIVKRAARLMDVEIEEEAAEMIAKRSRGTPRIAIRLTKRVRDMLTVEGADRIDIRIV 267

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
              +  L ID+ G D+ D + L  I   + GGPVG+  ++A L    D + ++ EPY++Q
Sbjct: 268 QKTMEILNIDEEGLDEFDRKILKTIIEVYRGGPVGLNALAASLGVEADTLSEVYEPYLLQ 327

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            GFI RTPRGR+    A++HL  + P 
Sbjct: 328 SGFIARTPRGRIATKKAYEHLKYEFPE 354


>gi|15639155|ref|NP_218601.1| Holliday junction DNA helicase RuvB [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|189025395|ref|YP_001933167.1| Holliday junction DNA helicase RuvB [Treponema pallidum subsp.
           pallidum SS14]
 gi|6174969|sp|P96115|RUVB_TREPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|3322427|gb|AAC65150.1| Holliday junction DNA helicase (ruvB) [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|189017970|gb|ACD70588.1| Holliday junction DNA helicase, subunit B [Treponema pallidum
           subsp. pallidum SS14]
          Length = 350

 Score =  317 bits (813), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 160/311 (51%), Positives = 217/311 (69%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPR L++F GQ +   NL++FI+AA+ R E+LDH+  +GPPGLGKTTLA + A ELGV 
Sbjct: 24  LRPRLLKDFLGQEKTKRNLRLFIQAARDRNESLDHLFLIGPPGLGKTTLAHITACELGVE 83

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + T  P + K  DLA +LT L +R V F+DEIHRL   +EE+LY AMED++LD ++G+G
Sbjct: 84  CKVTGAPALDKPKDLAGILTALSERSVFFVDEIHRLKPAIEEMLYIAMEDYELDWVIGQG 143

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSAR+V+I L  FTLI ATTR G++++PL  RFGI  R  FY  E+L  IVQR A+L  +
Sbjct: 144 PSARTVRIPLPPFTLIGATTRAGMVSSPLISRFGIVERFEFYTPEELAAIVQRSARLLDI 203

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +   AA  +A  SRGTPR+A RLLRR+RDFA+VA +  I+  I  A L  L ID++G +
Sbjct: 204 TLDARAALALARCSRGTPRVANRLLRRIRDFAQVAGSAHISETIVRAGLAHLKIDELGLE 263

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             D++ L ++  +FGGGPVG ET++  L E  + +ED  EPY+IQ G +QRTPRGR+   
Sbjct: 264 LHDIQLLRVMIEHFGGGPVGAETLAISLGESPETLEDYYEPYLIQIGLMQRTPRGRMATA 323

Query: 322 IAWQHLGIDIP 332
            A+ HLG+ +P
Sbjct: 324 RAYAHLGLPVP 334


>gi|302527850|ref|ZP_07280192.1| Holliday junction DNA helicase RuvB [Streptomyces sp. AA4]
 gi|302436745|gb|EFL08561.1| Holliday junction DNA helicase RuvB [Streptomyces sp. AA4]
          Length = 358

 Score =  317 bits (812), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 157/311 (50%), Positives = 215/311 (69%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPR L+EF GQ      L++ +E+A+ R    DHVL  GPPGLGKT++A +VA ELG  
Sbjct: 31  LRPRKLDEFVGQERVREQLELVLESARRRDVPPDHVLLSGPPGLGKTSMAMIVAAELGAA 90

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGP + +AGDLAA+L+NL   DVLFIDEIHR++   EE+LY AMEDF++D++VG+G
Sbjct: 91  IRITSGPALERAGDLAAMLSNLAPGDVLFIDEIHRIARPAEEMLYLAMEDFRVDVVVGKG 150

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P A S+ + ++ FTL+ ATTR G LT PL+DRFG   ++ FY   +L+ +V+R A + G+
Sbjct: 151 PGATSIPLEIAPFTLVGATTRSGSLTGPLRDRFGFTGQMEFYSAAELELVVRRAATILGI 210

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  +   EIA RSRGTPRIA RLLRRVRD+AEV     +T E+A AAL    +D++G D
Sbjct: 211 EIDRDGCAEIAGRSRGTPRIANRLLRRVRDYAEVRADGKVTLEVAQAALKVYDVDELGLD 270

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           +LD   L  + R+FGGGPVGI T++  + E    +E++ EPY+++ G + RTPRGR+   
Sbjct: 271 RLDRAVLGALTRSFGGGPVGISTLAVAVGEEATTVEEVCEPYLVRAGMLARTPRGRVATA 330

Query: 322 IAWQHLGIDIP 332
            AW HLG+  P
Sbjct: 331 AAWHHLGLVPP 341


>gi|282855629|ref|ZP_06264943.1| holliday junction DNA helicase RuvB [Pyramidobacter piscolens
           W5455]
 gi|282586559|gb|EFB91813.1| holliday junction DNA helicase RuvB [Pyramidobacter piscolens
           W5455]
          Length = 347

 Score =  317 bits (812), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 172/320 (53%), Positives = 222/320 (69%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           +E  D   LRP  L +F GQ E  S L+V+I+AAK R EALDH+LF GPPGLGKTTLA +
Sbjct: 19  KEREDERGLRPLRLSDFNGQTEIKSKLEVYIQAAKKREEALDHLLFYGPPGLGKTTLAGI 78

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +A E+    R T+GP + K GDLAA+L+NL+D DVLFIDEIHR+S  +EE+LY AMEDF 
Sbjct: 79  IAHEMNSELRVTTGPALEKPGDLAAILSNLQDHDVLFIDEIHRMSTTIEEVLYSAMEDFT 138

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           L ++VG+GP ARS+ +NL  FTL+ ATTR+GLL+ PL+ RFGI  +L  Y  E+L  I+ 
Sbjct: 139 LHIIVGKGPLARSICLNLPHFTLVGATTRLGLLSAPLRARFGIVEQLRLYTPEELCVILD 198

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           RGA +  + V  +A   IA RSRGTPRIA RLLRRVRDFAEVA   T+   +A+ A+  L
Sbjct: 199 RGAGVMNMKVEPDARRAIANRSRGTPRIALRLLRRVRDFAEVAGVPTVEAALAERAMDTL 258

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D +G D  D + L  I   F GGPVG+ T++A L+E    IED+ EPY+IQ+G I+RT
Sbjct: 259 GLDGLGLDDGDRKILDAIVSLFDGGPVGLSTLAAALNEEPQTIEDIYEPYLIQKGMIERT 318

Query: 314 PRGRLLMPIAWQHLGIDIPH 333
           PRGR     A+++LG   P 
Sbjct: 319 PRGRKATENAYRYLGKTPPQ 338


>gi|291059577|gb|ADD72312.1| Holliday junction DNA helicase RuvB [Treponema pallidum subsp.
           pallidum str. Chicago]
          Length = 354

 Score =  317 bits (812), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 160/311 (51%), Positives = 217/311 (69%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPR L++F GQ +   NL++FI+AA+ R E+LDH+  +GPPGLGKTTLA + A ELGV 
Sbjct: 28  LRPRLLKDFLGQEKTKRNLRLFIQAARDRNESLDHLFLIGPPGLGKTTLAHITACELGVE 87

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + T  P + K  DLA +LT L +R V F+DEIHRL   +EE+LY AMED++LD ++G+G
Sbjct: 88  CKVTGAPALDKPKDLAGILTALSERSVFFVDEIHRLKPAIEEMLYIAMEDYELDWVIGQG 147

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSAR+V+I L  FTLI ATTR G++++PL  RFGI  R  FY  E+L  IVQR A+L  +
Sbjct: 148 PSARTVRIPLPPFTLIGATTRAGMVSSPLISRFGIVERFEFYTPEELAAIVQRSARLLDI 207

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +   AA  +A  SRGTPR+A RLLRR+RDFA+VA +  I+  I  A L  L ID++G +
Sbjct: 208 TLDARAALALARCSRGTPRVANRLLRRIRDFAQVAGSAHISETIVRAGLAHLKIDELGLE 267

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             D++ L ++  +FGGGPVG ET++  L E  + +ED  EPY+IQ G +QRTPRGR+   
Sbjct: 268 LHDIQLLRVMIEHFGGGPVGAETLAISLGESPETLEDYYEPYLIQIGLMQRTPRGRMATA 327

Query: 322 IAWQHLGIDIP 332
            A+ HLG+ +P
Sbjct: 328 RAYAHLGLPVP 338


>gi|300781060|ref|ZP_07090914.1| crossover junction ATP-dependent DNA helicase RuvB [Corynebacterium
           genitalium ATCC 33030]
 gi|300532767|gb|EFK53828.1| crossover junction ATP-dependent DNA helicase RuvB [Corynebacterium
           genitalium ATCC 33030]
          Length = 358

 Score =  317 bits (812), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 152/311 (48%), Positives = 217/311 (69%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP++++EF GQ +    L + +E AK R    DH+L  GPPGLGKTT+A +VA+ELG +
Sbjct: 38  LRPKSIDEFIGQPKVRQQLGLVLEGAKKRNVVPDHILLSGPPGLGKTTMAMIVAQELGTS 97

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++   EE+LY AMEDF++D++VG+G
Sbjct: 98  LRMTSGPALERAGDLAAMLSNLMEGDVLFIDEIHRIARPAEEMLYMAMEDFRIDVIVGKG 157

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P A S+ +++  FTL+ ATTR G+LT PL+DRFG   ++ FY+++DL  ++ R A + G+
Sbjct: 158 PGATSIPLDIPPFTLVGATTRAGMLTGPLRDRFGFTAQMEFYDVDDLTRVITRAASILGV 217

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  +AA EI  RSRGTPRIA RLLRRVRD+AEV     +T E A  AL    +D++G D
Sbjct: 218 DIDRDAAVEIGSRSRGTPRIANRLLRRVRDWAEVNGDGRVTVEAAQQALEVFDVDELGLD 277

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           +LD   L  + ++ GGGPVG+ T++  + E    +E++ EPY+++ G + RT RGR+   
Sbjct: 278 RLDRAVLETLIKSHGGGPVGVSTLAIAVGEEPSTVEEVCEPYLVRAGLMARTGRGRVATA 337

Query: 322 IAWQHLGIDIP 332
            AW HLG+  P
Sbjct: 338 SAWHHLGMTPP 348


>gi|183601647|ref|ZP_02963017.1| Holliday junction DNA helicase B [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219683819|ref|YP_002470202.1| Holliday junction DNA helicase RuvB [Bifidobacterium animalis
           subsp. lactis AD011]
 gi|241190855|ref|YP_002968249.1| Holliday junction DNA helicase RuvB [Bifidobacterium animalis
           subsp. lactis Bl-04]
 gi|241196261|ref|YP_002969816.1| Holliday junction DNA helicase RuvB [Bifidobacterium animalis
           subsp. lactis DSM 10140]
 gi|183219253|gb|EDT89894.1| Holliday junction DNA helicase B [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219621469|gb|ACL29626.1| Holliday junction DNA helicase RuvB [Bifidobacterium animalis
           subsp. lactis AD011]
 gi|240249247|gb|ACS46187.1| Holliday junction DNA helicase B [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|240250815|gb|ACS47754.1| Holliday junction DNA helicase B [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|295793844|gb|ADG33379.1| Holliday junction DNA helicase B [Bifidobacterium animalis subsp.
           lactis V9]
          Length = 355

 Score =  317 bits (812), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 160/318 (50%), Positives = 218/318 (68%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           V  E      LRP  LE F GQ    + L++F++AA+ R  A DH+L  GPPGLGKTTLA
Sbjct: 24  VGNEPVSDEELRPHVLEGFIGQPRLKAQLQLFLDAARKRDVAPDHILMAGPPGLGKTTLA 83

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            +VA ELGV  R TSGP I  AGDLA++L++L+  +VLFIDEIHRL    EE+LY AMED
Sbjct: 84  MIVANELGVPIRVTSGPAIQHAGDLASILSSLDVGEVLFIDEIHRLPRAAEELLYIAMED 143

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F++D+MVG+GP A S+ + L RFT+I ATTR G+L +PL+ RFG    L+FY  E+L+ +
Sbjct: 144 FRVDVMVGKGPGASSIPLTLPRFTVIGATTREGMLPSPLRARFGFTAHLDFYPHEELEKL 203

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           ++R A + GL + D+AA ++++RSRGTPRIA RLLRRVRD+A V    ++  +    AL 
Sbjct: 204 IERSASVLGLPLEDQAARQLSLRSRGTPRIANRLLRRVRDWAIVHDLDSVGADDVKDALA 263

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
              ID  G D+LD+  L  I R F GGPVG+  +SA + E  + +E + EPY++++GF+ 
Sbjct: 264 LYQIDSEGLDRLDIAVLNAIVRQFNGGPVGLNNLSAMVGEEAETVETVCEPYLVREGFLI 323

Query: 312 RTPRGRLLMPIAWQHLGI 329
           RTP+GRL    AW+HLG+
Sbjct: 324 RTPKGRLATAKAWEHLGL 341


>gi|289178594|gb|ADC85840.1| RuvB [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 363

 Score =  317 bits (812), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 160/318 (50%), Positives = 218/318 (68%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           V  E      LRP  LE F GQ    + L++F++AA+ R  A DH+L  GPPGLGKTTLA
Sbjct: 32  VGNEPVSDEELRPHVLEGFIGQPRLKAQLQLFLDAARKRDVAPDHILMAGPPGLGKTTLA 91

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            +VA ELGV  R TSGP I  AGDLA++L++L+  +VLFIDEIHRL    EE+LY AMED
Sbjct: 92  MIVANELGVPIRVTSGPAIQHAGDLASILSSLDVGEVLFIDEIHRLPRAAEELLYIAMED 151

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F++D+MVG+GP A S+ + L RFT+I ATTR G+L +PL+ RFG    L+FY  E+L+ +
Sbjct: 152 FRVDVMVGKGPGASSIPLTLPRFTVIGATTREGMLPSPLRARFGFTAHLDFYPHEELEKL 211

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           ++R A + GL + D+AA ++++RSRGTPRIA RLLRRVRD+A V    ++  +    AL 
Sbjct: 212 IERSASVLGLPLEDQAARQLSLRSRGTPRIANRLLRRVRDWAIVHDLDSVGADDVKDALA 271

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
              ID  G D+LD+  L  I R F GGPVG+  +SA + E  + +E + EPY++++GF+ 
Sbjct: 272 LYQIDSEGLDRLDIAVLNAIVRQFNGGPVGLNNLSAMVGEEAETVETVCEPYLVREGFLI 331

Query: 312 RTPRGRLLMPIAWQHLGI 329
           RTP+GRL    AW+HLG+
Sbjct: 332 RTPKGRLATAKAWEHLGL 349


>gi|91203073|emb|CAJ72712.1| strongly similar to RuvB ATPase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 354

 Score =  317 bits (812), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 161/332 (48%), Positives = 226/332 (68%), Gaps = 5/332 (1%)

Query: 2   MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M  EG+LS + + ED+++ L LRP+   +F GQ     NL ++I+AAK R E +DHVLF 
Sbjct: 12  MLNEGVLSSSAAIEDSNLDLTLRPKRFNDFIGQDRIKENLHIYIKAAKKRGEPIDHVLFS 71

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTL+Q++A E     R+TSGP++ K  DLA +LTNL+  ++LFIDEIHRL+  
Sbjct: 72  GPPGLGKTTLSQIIASETNTAIRTTSGPILDKPADLAGILTNLQQGEILFIDEIHRLNTN 131

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE LY AMEDF +D+++ +G  ARSVKINL RFTLI ATTR GLLT PL+ RFG+  +L
Sbjct: 132 VEEYLYSAMEDFSIDIIIDQGQKARSVKINLQRFTLIGATTREGLLTAPLRSRFGVLEKL 191

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA---H 237
            FY  EDL  IV   A+   + +  + A  IA RSRGTPRIA R LRR+RD A+V     
Sbjct: 192 EFYPWEDLYKIVCNSARKLAIPIEVKGAEAIAKRSRGTPRIANRFLRRIRDVAQVLGEDG 251

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
              I  +IA   L  L +D+ G  ++D + L  + ++ GGGP+G++TI+  ++E  D IE
Sbjct: 252 KDVIDEKIALRGLEMLGVDENGLCEMDRKILQTVVKS-GGGPIGLKTIAVSVNEQEDTIE 310

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           ++ E ++IQ+G++++TPRGR+     ++HLG+
Sbjct: 311 EVYESFLIQRGYLEKTPRGRIATKQTYEHLGV 342


>gi|282901137|ref|ZP_06309068.1| Holliday junction DNA helicase RuvB [Cylindrospermopsis raciborskii
           CS-505]
 gi|281193969|gb|EFA68935.1| Holliday junction DNA helicase RuvB [Cylindrospermopsis raciborskii
           CS-505]
          Length = 370

 Score =  317 bits (812), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 157/321 (48%), Positives = 217/321 (67%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
            V ++D     +RP+   ++ GQ +    L + I+AAK+R + +DH+L  GP GLGKTT+
Sbjct: 43  TVGEDDKQEERIRPQRFADYIGQQDLKDVLDIAIKAAKSRGDVMDHLLLYGPAGLGKTTM 102

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           A ++A E+GVN++ TS P + +  D+  LL NL+  DVLFIDEIHRLS + EEILYPAME
Sbjct: 103 AMILASEMGVNYKITSAPALERPRDIVGLLVNLKAGDVLFIDEIHRLSRMTEEILYPAME 162

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           D++LD+ +G+G  A+   I LS+FTL+ ATTRVG LT+PL+DRFG+  +L FY++E+L  
Sbjct: 163 DYRLDVTIGKGSGAKVRTIPLSKFTLVGATTRVGALTSPLRDRFGLVQKLRFYQVEELSQ 222

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           IV R A++    V  E A EIA RSRGTPRIA RLL+RVRD+A V     I +  A  AL
Sbjct: 223 IVLRSAEVLQTIVNLEGATEIAKRSRGTPRIANRLLKRVRDYAIVKSRPQIDQPTAAEAL 282

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
               +D  G D  D + LT+I  NF GGPVG+ET++A   E    IE++ EPY++Q G++
Sbjct: 283 TLFQVDPCGLDWTDRKMLTVIIENFHGGPVGLETLAAATGEDTQTIEEVYEPYLMQIGYL 342

Query: 311 QRTPRGRLLMPIAWQHLGIDI 331
            RTPRGR++   A+QHLG  +
Sbjct: 343 SRTPRGRVVTSAAYQHLGFQL 363


>gi|308235710|ref|ZP_07666447.1| Holliday junction DNA helicase RuvB [Gardnerella vaginalis ATCC
           14018]
 gi|311114740|ref|YP_003985961.1| crossover junction ATP-dependent DNA helicase RuvB [Gardnerella
           vaginalis ATCC 14019]
 gi|310946234|gb|ADP38938.1| crossover junction ATP-dependent DNA helicase RuvB [Gardnerella
           vaginalis ATCC 14019]
          Length = 353

 Score =  317 bits (812), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 158/324 (48%), Positives = 221/324 (68%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           S  +  E      LRP  L+ F GQ    + L++F++AA+ R    DH+L  GPPGLGKT
Sbjct: 26  SSPIGNEQISDEELRPHALDGFIGQPLLKAQLQLFLDAARLRDVPPDHMLLAGPPGLGKT 85

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           TLA +VA ELGV+ R TSGP I  AGDLA++L++L+  +VLFIDEIHRL    EE+LY A
Sbjct: 86  TLAMIVANELGVSIRVTSGPAIQHAGDLASILSSLDTGEVLFIDEIHRLPRAAEELLYIA 145

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           MEDF++D+MVG+GP A S+ + L  FT++ ATTR G+L +PL+ RFG    L+FY  ++L
Sbjct: 146 MEDFRVDVMVGKGPGASSIPLTLPHFTVVGATTREGMLPSPLRARFGFTAHLDFYPHDEL 205

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           + +++R + L G+ + D+AA E+A+RSRGTPRIA RLLRRVRD+A V + K + RE    
Sbjct: 206 EKLIERSSVLLGVHLVDQAAKELAIRSRGTPRIANRLLRRVRDWAVVHNLKDVNRESVIE 265

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL    ID  G D+LD+  L  I  +F GGPVG+  ++A + E  + +E + EPY++++G
Sbjct: 266 ALSLYQIDTQGLDRLDIAVLKAIVNHFNGGPVGLNNLAAMVGEEAETVETVCEPYLVREG 325

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIP 332
           F+ RTP+GR+    AWQHLG+  P
Sbjct: 326 FLIRTPKGRVATEKAWQHLGLKAP 349


>gi|67924049|ref|ZP_00517499.1| Holliday junction DNA helicase RuvB [Crocosphaera watsonii WH 8501]
 gi|67854116|gb|EAM49425.1| Holliday junction DNA helicase RuvB [Crocosphaera watsonii WH 8501]
          Length = 354

 Score =  317 bits (811), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 155/320 (48%), Positives = 222/320 (69%), Gaps = 1/320 (0%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
            +N  Q++ + S+ RP + +E+ GQ +    L + IEAAK R E +DH+L  GPPGLGKT
Sbjct: 23  KKNQVQDNLEESI-RPHSFDEYIGQKDLKDVLSIVIEAAKTRNEPIDHLLLYGPPGLGKT 81

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           T++ ++A ++ VN + T+ P + +  D+  LL NL+  D+LFIDEIHRL+ + EE+LYPA
Sbjct: 82  TISLILASQMEVNCKITAAPALERPRDITGLLVNLKPGDILFIDEIHRLNRLTEELLYPA 141

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           MED++LD+ +G+G +AR+  I L +FTL+ ATT+VG LT+PL+DRFG+  RL FYE E+L
Sbjct: 142 MEDYRLDITIGKGQAARTRSIPLPKFTLVGATTKVGALTSPLRDRFGLIQRLKFYEPEEL 201

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             I+QR AKL   ++T+  + EI  RSRGTPRIA RLLRRVRD+ +V   ++IT+E+A  
Sbjct: 202 ALIIQRTAKLLNTSITEPGSLEIGRRSRGTPRIANRLLRRVRDYIQVKKFESITQELAAE 261

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL    +D  G D  D   L  + + F GGPVG+E I+A   E    IE++ EPY++Q G
Sbjct: 262 ALDIYQVDPQGLDWTDRLILETMIKQFNGGPVGLEAIAAATGEDAKTIEEVYEPYLLQIG 321

Query: 309 FIQRTPRGRLLMPIAWQHLG 328
           ++ RTPRGR++  IA+QHLG
Sbjct: 322 YLNRTPRGRVVTAIAYQHLG 341


>gi|154508893|ref|ZP_02044535.1| hypothetical protein ACTODO_01404 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798527|gb|EDN80947.1| hypothetical protein ACTODO_01404 [Actinomyces odontolyticus ATCC
           17982]
          Length = 352

 Score =  316 bits (810), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 161/318 (50%), Positives = 215/318 (67%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E A  + LRP+ L EF GQ      L++ ++AA+ R+ + DHVL  GPPGLGKTTLA ++
Sbjct: 27  ERAAEAALRPKKLSEFVGQRVVRGQLQLVLDAARMRSASPDHVLLAGPPGLGKTTLAMII 86

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A E+G + R TSGP I  AGDLAA+L+ L++ DVLFIDEIHRL+   EE+LY AMEDF++
Sbjct: 87  AAEMGTSLRLTSGPAIQHAGDLAAILSGLQEGDVLFIDEIHRLARTAEEMLYLAMEDFRV 146

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D++VG+GP A S+ + L  FT++ ATTR GLL  PL+DRFG    L FYE ++L+++V R
Sbjct: 147 DVVVGKGPGATSIPLTLPPFTVVGATTRSGLLPAPLRDRFGFTAHLEFYETDELQSVVTR 206

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A L G  +  +AA EIA RSRGTPRIA RLLRRV D+A+V     +T E A  AL    
Sbjct: 207 SASLLGSPIDAQAAHEIASRSRGTPRIANRLLRRVVDYAQVHGDGQLTLEAARGALELFE 266

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D  G D+LD   L  I R F GGPVG+ T+S  + E  + +E + EPY++++GF+ RT 
Sbjct: 267 VDPSGLDRLDRAVLEAICRRFAGGPVGLTTLSVTIGEEAETVETVAEPYLVREGFLVRTN 326

Query: 315 RGRLLMPIAWQHLGIDIP 332
           RGR+    AW HLG+  P
Sbjct: 327 RGRMATAKAWAHLGLTPP 344


>gi|126657563|ref|ZP_01728719.1| Holliday junction DNA helicase RuvB [Cyanothece sp. CCY0110]
 gi|126621267|gb|EAZ91980.1| Holliday junction DNA helicase RuvB [Cyanothece sp. CCY0110]
          Length = 358

 Score =  316 bits (810), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 156/327 (47%), Positives = 224/327 (68%), Gaps = 1/327 (0%)

Query: 3   DREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           DRE L +   +Q+  ++   +RP + +E+ GQ +    L + IEAAK R E +DH+L  G
Sbjct: 20  DRELLKTTQTTQDKDNLEESIRPHSFDEYIGQKDLKDVLSIVIEAAKTRNEPMDHLLLYG 79

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTT++ ++A E+GVN + T+ P + +  D+  LL NL+  D+LFIDEIHRL+ + 
Sbjct: 80  PPGLGKTTISLILASEMGVNCKITAAPALERPRDITGLLVNLKPGDILFIDEIHRLNRLT 139

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMED++L++ +G+G +AR+  I L +FTL+ ATT+VG LT+PL+DRFG+  RL 
Sbjct: 140 EELLYPAMEDYRLEITIGKGQAARTRSIPLPKFTLVGATTKVGSLTSPLRDRFGLIQRLK 199

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY+ E+L  I++R AKL   ++T++ + EI  RSRGTPRIA RLLRRVRD+ +V    TI
Sbjct: 200 FYDPEELALIIKRTAKLLNTSITEQGSQEIGRRSRGTPRIANRLLRRVRDYIQVKKFDTI 259

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T+E+A  AL    +D  G D  D   L  +   F GGPVG+E ++A   E    IE++ E
Sbjct: 260 TQELAAEALNIYQVDPQGLDWTDRLILETMITQFDGGPVGLEAVAAATGEDAKTIEEVYE 319

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLG 328
           PY++Q G+I RTPRGR++   A+QHLG
Sbjct: 320 PYLLQIGYINRTPRGRVVTTAAYQHLG 346


>gi|293192653|ref|ZP_06609607.1| holliday junction DNA helicase RuvB [Actinomyces odontolyticus
           F0309]
 gi|292820160|gb|EFF79157.1| holliday junction DNA helicase RuvB [Actinomyces odontolyticus
           F0309]
          Length = 346

 Score =  316 bits (810), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 161/318 (50%), Positives = 215/318 (67%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E A  + LRP+ L EF GQ      L++ ++AA+ R+ + DHVL  GPPGLGKTTLA ++
Sbjct: 21  ERAAEAALRPKKLSEFVGQRVVRGQLQLVLDAARMRSASPDHVLLAGPPGLGKTTLAMII 80

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A E+G + R TSGP I  AGDLAA+L+ L++ DVLFIDEIHRL+   EE+LY AMEDF++
Sbjct: 81  AAEMGTSLRLTSGPAIQHAGDLAAILSGLQEGDVLFIDEIHRLARTAEEMLYLAMEDFRV 140

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D++VG+GP A S+ + L  FT++ ATTR GLL  PL+DRFG    L FYE ++L+++V R
Sbjct: 141 DVVVGKGPGATSIPLTLPPFTVVGATTRSGLLPAPLRDRFGFTAHLEFYETDELQSVVTR 200

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A L G  +  +AA EIA RSRGTPRIA RLLRRV D+A+V     +T E A  AL    
Sbjct: 201 SASLLGSPIDAQAAHEIASRSRGTPRIANRLLRRVVDYAQVHGDGQLTLEAARGALELFE 260

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D  G D+LD   L  I R F GGPVG+ T+S  + E  + +E + EPY++++GF+ RT 
Sbjct: 261 VDPSGLDRLDRAVLEAICRRFAGGPVGLTTLSVTIGEEAETVETVAEPYLVREGFLVRTN 320

Query: 315 RGRLLMPIAWQHLGIDIP 332
           RGR+    AW HLG+  P
Sbjct: 321 RGRMATAKAWAHLGLTPP 338


>gi|297626359|ref|YP_003688122.1| Holliday junction ATP-dependent DNA helicase [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296922124|emb|CBL56692.1| Holliday junction ATP-dependent DNA helicase [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 341

 Score =  316 bits (809), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 155/311 (49%), Positives = 215/311 (69%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP TLEEF GQ      L + + AAK R    DHVL  GPPGLGKTTLA ++A E+GV 
Sbjct: 21  LRPSTLEEFEGQPRVSDQLGLVLSAAKHRGTTPDHVLLSGPPGLGKTTLAMIIASEMGVP 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
              TSGP I   GDLAA+L+ L + +VLF+DEIHR+S   EE+LY AMEDF++D++VG+G
Sbjct: 81  LHITSGPAIQHPGDLAAILSGLVEGEVLFLDEIHRMSRPAEEMLYLAMEDFRVDVVVGKG 140

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P A ++ I +  FTL+ ATTRVGLL +PL+DRFG    L+FYE++DL++IV R + + G+
Sbjct: 141 PGATAIPIEIPAFTLVGATTRVGLLPSPLRDRFGFTGNLDFYEVDDLQSIVTRSSAMLGV 200

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + + +A EIA RSRGTPRIA RLLRRVRD+A+V +   +   +  AAL    +D +G D
Sbjct: 201 GLDEASAHEIASRSRGTPRIANRLLRRVRDYAQVNNQGRVDLALTRAALELYEVDPLGLD 260

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           +LD   L  I   FGGGPVG+ T++  ++E  + ++++ EP++++ GF+ RTPRGR+   
Sbjct: 261 RLDRAVLEAICTKFGGGPVGLSTLAISVAEEAETVQEVAEPFLVRLGFLMRTPRGRVATE 320

Query: 322 IAWQHLGIDIP 332
             W+HLG+  P
Sbjct: 321 AGWRHLGLTPP 331


>gi|268679041|ref|YP_003303472.1| Holliday junction DNA helicase RuvB [Sulfurospirillum deleyianum
           DSM 6946]
 gi|268617072|gb|ACZ11437.1| Holliday junction DNA helicase RuvB [Sulfurospirillum deleyianum
           DSM 6946]
          Length = 340

 Score =  316 bits (809), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 162/322 (50%), Positives = 229/322 (71%), Gaps = 1/322 (0%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
            VS E      LRP + EE+ GQ +   NL+VFI+AA  R+E LDH+LF GPPGLGKTTL
Sbjct: 9   KVSFESEYEKSLRPTSFEEYIGQEKIKKNLQVFIQAALKRSECLDHILFFGPPGLGKTTL 68

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           A +V+ E+  N + T+ P+I K+GDLAA+LTNL++ D+LFIDEIHRLS  +EEILYPAME
Sbjct: 69  AYIVSNEMRANIKITAAPMIEKSGDLAAILTNLQEGDILFIDEIHRLSPAIEEILYPAME 128

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           DF+LD+++G GP+A+++KI+L  FTLI ATTR G++++PL+DRFG+  RL FY  E+L  
Sbjct: 129 DFRLDIIIGSGPAAQTIKIDLPHFTLIGATTRAGMISSPLRDRFGMHFRLQFYTKEELAL 188

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           I+ + +        ++AA E+A RSRGTPRIA RLL+R+RD+A+V     I +E A   L
Sbjct: 189 IITKASYKLEKRCLNDAAFEMARRSRGTPRIALRLLKRIRDYADVVDETEIYKERAQYGL 248

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
             L ++ +GFD+LDL+YL ++ ++  G P+G+ TI+A LSE    IED+IEPY++   +I
Sbjct: 249 NELGVNDLGFDELDLKYLELLLQS-KGRPLGLSTIAAALSEDEGTIEDVIEPYLLANSYI 307

Query: 311 QRTPRGRLLMPIAWQHLGIDIP 332
           +RT RGR+  P  ++   +  P
Sbjct: 308 ERTARGRIASPKTYELFRLTPP 329


>gi|302541120|ref|ZP_07293462.1| Holliday junction DNA helicase RuvB [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302458738|gb|EFL21831.1| Holliday junction DNA helicase RuvB [Streptomyces himastatinicus
           ATCC 53653]
          Length = 353

 Score =  316 bits (809), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 155/313 (49%), Positives = 215/313 (68%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L EF GQ      L + ++AA+ R    DHVL  G PGLGKTTL+ ++A E+G  
Sbjct: 29  LRPKDLGEFVGQERVREQLDLVLKAARQRGGTADHVLLSGAPGLGKTTLSMIIAAEMGAP 88

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGP I  AGDLAA+L++L + +VLF+DEIHR+S   EE+LY AMEDF++D++VG+G
Sbjct: 89  IRITSGPAIQHAGDLAAILSSLAEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDVIVGKG 148

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P A ++ + L  FTL+ ATTR GLL  PL+DRFG    + FY   +L+ ++ R A+L  +
Sbjct: 149 PGATAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTGHMEFYAPAELERVIHRSARLLEV 208

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  E A EIA RSRGTPRIA RLLRRVRD+A+V     ITREIA +AL    +D  G D
Sbjct: 209 TIEPEGAAEIAGRSRGTPRIANRLLRRVRDYAQVKADGVITREIAGSALAVYDVDGRGLD 268

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           +LD   L+ + + FGGGPVG+ T++  + E R+ +E++ EP+++++G + RTPRGR+  P
Sbjct: 269 RLDRAVLSALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPFLVREGLLARTPRGRIGTP 328

Query: 322 IAWQHLGIDIPHR 334
            AW+HLG+  P R
Sbjct: 329 AAWEHLGLTPPQR 341


>gi|124026772|ref|YP_001015887.1| Holliday junction DNA helicase B [Prochlorococcus marinus str.
           NATL1A]
 gi|166231536|sp|A2C563|RUVB_PROM1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|123961840|gb|ABM76623.1| Holliday junction DNA helicase RuvB [Prochlorococcus marinus str.
           NATL1A]
          Length = 356

 Score =  315 bits (808), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 153/324 (47%), Positives = 227/324 (70%), Gaps = 5/324 (1%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
            +SQ+D+    LRP++ ++F GQ E    L++ ++A+  R EALDH++  GPPGLGKTT+
Sbjct: 33  KLSQQDS----LRPKSFDDFVGQSELKKVLEISVKASLKRGEALDHLMLYGPPGLGKTTM 88

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           A V+A ELGV  R TS P + +  D+  LL N++ R+++F+DEIHRL+ I +E+LYPAME
Sbjct: 89  ALVIAEELGVKARVTSAPALERPRDIVGLLINMQPRELIFVDEIHRLNRISQELLYPAME 148

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           D +LDL VG+G S+R   I +  FTL+ ATT+   L++P++DRFGI  RL+FY   DL+ 
Sbjct: 149 DRRLDLTVGKGTSSRMRSIEIPPFTLVGATTKPAALSSPMRDRFGITQRLDFYNYLDLEN 208

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV-AHAKTITREIADAA 249
           I++R AKL  L +++EA+ ++A R RGTPRIA RL+RRVRD+AEV +H+K I  E+ + A
Sbjct: 209 IIKRSAKLINLVISEEASQQLAKRCRGTPRIANRLIRRVRDYAEVYSHSKKIDVEVVNDA 268

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           L    +D+ G D  D  Y+ ++   + GGPVG+ET++AGL E    +E ++EPY++Q GF
Sbjct: 269 LDLHRVDQRGLDATDRSYIGLLVNQYQGGPVGLETLAAGLGEDSTTLETVVEPYLMQIGF 328

Query: 310 IQRTPRGRLLMPIAWQHLGIDIPH 333
           +QRT RGR++ P A +H  +  P+
Sbjct: 329 LQRTSRGRVVTPAAKKHYLLTSPN 352


>gi|227833241|ref|YP_002834948.1| holliday junction DNA helicase [Corynebacterium aurimucosum ATCC
           700975]
 gi|262184227|ref|ZP_06043648.1| Holliday junction DNA helicase RuvB [Corynebacterium aurimucosum
           ATCC 700975]
 gi|254767422|sp|C3PGQ6|RUVB_CORA7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|227454257|gb|ACP33010.1| holliday junction DNA helicase [Corynebacterium aurimucosum ATCC
           700975]
          Length = 361

 Score =  315 bits (808), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 153/312 (49%), Positives = 213/312 (68%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP++L+EF GQ +    L + +  AK R    DHVL  GPPGLGKTT+A ++A+ELG +
Sbjct: 42  LRPKSLDEFIGQPKVREQLSLVLNGAKNRGVTPDHVLLSGPPGLGKTTMAMIIAQELGSS 101

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++   EE+LY AMEDF++D++VG+G
Sbjct: 102 LRMTSGPALERAGDLAAMLSNLMEGDVLFIDEIHRIARPAEEMLYMAMEDFRIDVIVGKG 161

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P A S+ + +  FTL+ ATTR G+LT PL+DRFG   ++ +Y+ EDL  ++ R A++  +
Sbjct: 162 PGATSIPLEIPPFTLVGATTRAGMLTGPLRDRFGFTAQMEYYDTEDLTRVISRAARILEV 221

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  +AA EI  RSRGTPRIA RLLRRVRD+AEV     I    A AAL    +D+ G D
Sbjct: 222 DIDQDAAVEIGSRSRGTPRIANRLLRRVRDYAEVNGDGHIDVAAAQAALRVFDVDERGLD 281

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           +LD   L  + +  GGGPVG+ T++  + E    +E++ EPY+++ G I RT RGR+   
Sbjct: 282 RLDRAVLGALIKGHGGGPVGVNTLAIAVGEEPSTVEEVCEPYLVRAGMISRTGRGRVATA 341

Query: 322 IAWQHLGIDIPH 333
            AWQHLG++ P 
Sbjct: 342 AAWQHLGLEAPE 353


>gi|297195497|ref|ZP_06912895.1| Holliday junction DNA helicase B [Streptomyces pristinaespiralis
           ATCC 25486]
 gi|197722112|gb|EDY66020.1| Holliday junction DNA helicase B [Streptomyces pristinaespiralis
           ATCC 25486]
          Length = 356

 Score =  315 bits (808), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 156/327 (47%), Positives = 222/327 (67%), Gaps = 1/327 (0%)

Query: 7   LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           L++ +   ED+ + + LRPRTL+EF GQ      L + + AA+ R    DHVL  G PGL
Sbjct: 15  LVTPSADTEDSAVEAALRPRTLDEFVGQERVRQQLDLVLRAARQRGATADHVLLSGAPGL 74

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTL+ ++A E+    R TSGP I  AGDLAA+L++L++ +VLF+DEIHR+S   EE+L
Sbjct: 75  GKTTLSMIIASEMNAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEML 134

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           Y AMEDF++D++VG+GP A ++ + L  FTL+ ATTR GLL  PL+DRFG    + FYE 
Sbjct: 135 YMAMEDFRVDVIVGKGPGATAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTAHMEFYEP 194

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
            +L+ ++ R A+L  + +  + A EIA RSRGTPRIA RLLRRVRD+A+V     + RE+
Sbjct: 195 VELERVIHRSAQLLDVEIDPDGAAEIAGRSRGTPRIANRLLRRVRDYAQVEADGRVDREV 254

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           A AAL    +D  G D+LD   L  + + FGGGPVG+ T++  + E R+ +E++ EP+++
Sbjct: 255 AAAALQVYEVDTRGLDRLDRAVLQALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPFLV 314

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++G + RTPRGR+  P AW HLG+  P
Sbjct: 315 REGLLARTPRGRVATPAAWAHLGLTPP 341


>gi|218780991|ref|YP_002432309.1| Holliday junction DNA helicase RuvB [Desulfatibacillum alkenivorans
           AK-01]
 gi|218762375|gb|ACL04841.1| Holliday junction DNA helicase RuvB [Desulfatibacillum alkenivorans
           AK-01]
          Length = 349

 Score =  315 bits (808), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 160/308 (51%), Positives = 208/308 (67%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP  L+E+ GQ +A   L++ IEAA AR EALDH LF GPPGLGKTTLA ++A ELG  
Sbjct: 33  LRPERLDEYIGQKDAVETLQIAIEAALARNEALDHTLFHGPPGLGKTTLAHIIANELGSR 92

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
              TSGP + K GDL  LLT+LE++DVLF+DEIHRL   VEE+LYPAMEDF +D +  +G
Sbjct: 93  LTVTSGPALEKGGDLLGLLTHLEEKDVLFVDEIHRLPKTVEELLYPAMEDFAVDFIFDKG 152

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
             ARS +  L  F L+ ATTRVGLL+ PL+DRFGI   L+FYE  DL  I +R A L  +
Sbjct: 153 MHARSHRYRLKNFVLVGATTRVGLLSAPLRDRFGIFRNLDFYEEPDLIKIARRSALLLNV 212

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + +E A E+A RSRGTPRI  RLL+RVRD+A+V     I ++    +L    +D++G  
Sbjct: 213 EMDNEGALELARRSRGTPRIVNRLLKRVRDYAQVRSHGRIDKKTVSESLALEGVDEIGLT 272

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             D RYL  I   +GGGPVGIE I+A + E  D + D++EP++++ GF+ RT  GR    
Sbjct: 273 NQDRRYLETIINFYGGGPVGIEAIAATIQEESDTLVDVVEPFLLKIGFLMRTSSGRKASE 332

Query: 322 IAWQHLGI 329
            A++HLGI
Sbjct: 333 AAYKHLGI 340


>gi|282896461|ref|ZP_06304481.1| Holliday junction DNA helicase RuvB [Raphidiopsis brookii D9]
 gi|281198567|gb|EFA73448.1| Holliday junction DNA helicase RuvB [Raphidiopsis brookii D9]
          Length = 328

 Score =  315 bits (808), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 159/319 (49%), Positives = 217/319 (68%), Gaps = 4/319 (1%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
            QED+    +RPR   ++ GQ +    L + I+AAK+R + +DH+L  GP GLGKTT+A 
Sbjct: 6   KQEDS----IRPRRFADYIGQQDLKDVLDIAIKAAKSRGDVMDHLLLYGPAGLGKTTMAM 61

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++A E+GVN++ TS P + +  D+  LL NL+  DVLFIDEIHRLS + EEILYPAMED+
Sbjct: 62  ILASEMGVNYKITSAPALERPRDIVGLLVNLKPGDVLFIDEIHRLSRMTEEILYPAMEDY 121

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           +LD+ +G+G  A+   I LS+FTL+ ATTRVG LT+PL+DRFG+  +L FY++E+L  IV
Sbjct: 122 RLDVTIGKGSGAKVRTIPLSKFTLVGATTRVGALTSPLRDRFGLVQKLRFYQVEELSQIV 181

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R A++    V  E A EIA RSRGTPRIA RLL+RVRD+A V     I +  A  AL  
Sbjct: 182 LRSAEVLQTIVNLEGAREIAKRSRGTPRIANRLLKRVRDYAIVKSRPQIDQPTAAEALTL 241

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
             +D  G D  D + LT+I  NF GGPVG+ET++A   E    IE++ EPY++Q G++ R
Sbjct: 242 FQVDPCGLDWTDRKMLTVIIENFHGGPVGLETLAAATGEDTQTIEEVYEPYLMQIGYLSR 301

Query: 313 TPRGRLLMPIAWQHLGIDI 331
           TPRGR++   A+QHLG  +
Sbjct: 302 TPRGRVVTSAAYQHLGFQL 320


>gi|72162492|ref|YP_290149.1| Holliday junction DNA helicase RuvB [Thermobifida fusca YX]
 gi|97190406|sp|Q47N43|RUVB_THEFY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|71916224|gb|AAZ56126.1| Holliday junction DNA helicase subunit RuvB [Thermobifida fusca YX]
          Length = 351

 Score =  315 bits (807), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 163/331 (49%), Positives = 226/331 (68%), Gaps = 2/331 (0%)

Query: 3   DREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           DRE L+S   + +D  + S LRPRTL+EF GQ      L + + +A+ R  A DH+L  G
Sbjct: 5   DRE-LVSPEAALDDHAVESALRPRTLDEFVGQDRVREQLSLVLRSAQQRGTAPDHILMSG 63

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
            PGLGKTTLA ++A ELG   R TSGP I ++GDLAA+L+ L + +VLF+DEIHR++   
Sbjct: 64  GPGLGKTTLAMIIAAELGAPLRITSGPAIERSGDLAAVLSTLREGEVLFLDEIHRMARPA 123

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMEDF++D+MVG+GP A ++ + ++ FTL+ ATTR G+L  PL+DRFG    ++
Sbjct: 124 EEMLYVAMEDFRVDVMVGKGPGATAIPLEIAPFTLVGATTRAGMLPAPLRDRFGFVAHMD 183

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY  E+L+ I+ R A+L G+ + D+AA EIA RSRGTPRIA RLLRRVRD+A+V     +
Sbjct: 184 FYSPEELELILHRSARLLGIELLDDAAAEIARRSRGTPRIANRLLRRVRDYAQVRGDGRL 243

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T E A AAL    +D  G D+LD   L  + R F GGPVG+ T++  + E  + +E + E
Sbjct: 244 TLECARAALSLYEVDDEGLDRLDRAVLDALLRRFRGGPVGLSTLAVSVGEEPETVEIVAE 303

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           P++++ GFI RTPRGR+  P AW H+G+  P
Sbjct: 304 PFLVRAGFIARTPRGRVATPQAWAHMGLTPP 334


>gi|239939963|ref|ZP_04691900.1| Holliday junction DNA helicase RuvB [Streptomyces roseosporus NRRL
           15998]
 gi|239986447|ref|ZP_04707111.1| Holliday junction DNA helicase RuvB [Streptomyces roseosporus NRRL
           11379]
 gi|291443394|ref|ZP_06582784.1| holliday junction DNA helicase B [Streptomyces roseosporus NRRL
           15998]
 gi|291346341|gb|EFE73245.1| holliday junction DNA helicase B [Streptomyces roseosporus NRRL
           15998]
          Length = 361

 Score =  315 bits (807), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 159/329 (48%), Positives = 222/329 (67%), Gaps = 1/329 (0%)

Query: 7   LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           L+  +   ED  + + LRP+ L+EF GQ +    L + ++AA+AR    DHVL  G PGL
Sbjct: 22  LVDADADGEDTAVEAALRPKDLDEFVGQEKVREQLDLVLKAARARGATADHVLLSGAPGL 81

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTL+ ++A E+    R TSGP I  AGDLAA+L++L++ +VLF+DEIHR+S   EE+L
Sbjct: 82  GKTTLSMIIAAEMNAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEML 141

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           Y AMEDF++D++VG+GP A ++ + L  FTL+ ATTR GLL  PL+DRFG    + FY  
Sbjct: 142 YMAMEDFRVDVIVGKGPGATAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTGHMEFYAP 201

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
            +L+ +V R A+L  + +  E A EIA RSRGTPRIA RLLRRVRD+A+V    TI REI
Sbjct: 202 AELERVVHRSARLLDVGIDVEGAAEIAGRSRGTPRIANRLLRRVRDYAQVKAEGTIDREI 261

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           A AAL    +D  G D+LD   L  + + FGGGPVG+ T++  + E R+ +E++ EP+++
Sbjct: 262 AAAALKVYEVDARGLDRLDRAVLGALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPFLV 321

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           ++G + RTPRGR+  P AW HLG+  P  
Sbjct: 322 REGLLARTPRGRVATPAAWAHLGLVPPQH 350


>gi|111221575|ref|YP_712369.1| Holliday junction DNA helicase RuvB [Frankia alni ACN14a]
 gi|123143325|sp|Q0RNU6|RUVB_FRAAA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|111149107|emb|CAJ60790.1| Holliday junction helicase, subunit B [Frankia alni ACN14a]
          Length = 366

 Score =  315 bits (807), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 154/309 (49%), Positives = 218/309 (70%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPRTL EF GQ +    L + +E A+AR    DHVL  GPPGLGKT+LA ++A EL V 
Sbjct: 22  LRPRTLTEFVGQRKVREQLSIMLEGAQARGRPPDHVLLSGPPGLGKTSLAMIIAEELAVP 81

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGP I +AGDL A+LT L   +VLF+DEIHR++   EE+LY AMEDF++D+++G+G
Sbjct: 82  LRMTSGPAIERAGDLVAILTALSPGEVLFLDEIHRIARPAEELLYAAMEDFRVDVILGKG 141

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P A ++ ++++ FTL+ ATTR GLLT PL+DRFG    L+FY  ++L  ++ R A L G+
Sbjct: 142 PGATAIPLDVAPFTLVGATTRSGLLTGPLRDRFGFTAHLDFYAPDELARVLTRSAGLLGV 201

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
           ++T++ A E+A RSRGTPRIA RLLRRVRD+AEV     +TR++A AAL    +D +G D
Sbjct: 202 SLTEDGAAEVAGRSRGTPRIANRLLRRVRDYAEVRADGVVTRDVARAALRIYDVDGLGLD 261

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           +LD   L  +   FGGGPVG+ T++  + E  + +ED+ EP++++ G + RT RGR+  P
Sbjct: 262 RLDRAVLEALVGRFGGGPVGLTTLAVSVGEEPETVEDVAEPFLLRAGLLIRTSRGRIATP 321

Query: 322 IAWQHLGID 330
            A++HLG++
Sbjct: 322 AAFEHLGLE 330


>gi|296270036|ref|YP_003652668.1| Holliday junction DNA helicase RuvB [Thermobispora bispora DSM
           43833]
 gi|296092823|gb|ADG88775.1| Holliday junction DNA helicase RuvB [Thermobispora bispora DSM
           43833]
          Length = 349

 Score =  315 bits (807), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 159/331 (48%), Positives = 223/331 (67%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           ++R+ +    V  E    + LRP+ L EF GQ      L + +E+A+ R    DHVL  G
Sbjct: 3   VERDLVSPEPVGDEPVIEATLRPKRLSEFIGQQRVREQLSLVLESARRRRRPPDHVLMSG 62

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
            PGLGKTTLA ++A ELG   R TSGP + +AGDLAA+L+ L + +VLFIDEIHR++   
Sbjct: 63  GPGLGKTTLALIIAAELGAPIRMTSGPALERAGDLAAILSTLTEGEVLFIDEIHRMARPA 122

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMEDF++D++VG+GP A S+ + ++ FTL+ ATTR GLL  PL+DRFG    ++
Sbjct: 123 EEMLYLAMEDFRIDVVVGKGPGATSIPLEIAPFTLVGATTRAGLLPAPLRDRFGFTAHMD 182

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FYE+ +L+ ++ R A+L G  + ++ A EIA RSRGTPRIA RLLRRVRD+AEV     I
Sbjct: 183 FYEVAELEQVLHRSARLLGADLREDGAHEIAKRSRGTPRIANRLLRRVRDYAEVRAQGVI 242

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           TRE+A AAL    +D  G D+LD   L  + R FGGGPVG+ T++  + E  + +E + E
Sbjct: 243 TREVAAAALDLYEVDAEGLDRLDRAVLEALLRKFGGGPVGLSTLAVAVGEEPETVEIVAE 302

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           P++++QG + RTPRGR+   +AW+H G+  P
Sbjct: 303 PFLVRQGLLARTPRGRVATALAWKHFGLTPP 333


>gi|332707639|ref|ZP_08427667.1| holliday junction DNA helicase subunit RuvB [Lyngbya majuscula 3L]
 gi|332353548|gb|EGJ33060.1| holliday junction DNA helicase subunit RuvB [Lyngbya majuscula 3L]
          Length = 363

 Score =  315 bits (807), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 157/309 (50%), Positives = 218/309 (70%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L ++ GQ E    L++ I+AAKAR EA+DH+L  GPPGLGKTT++ ++A E+ VN
Sbjct: 55  IRPQRLADYIGQKELKGVLEIGIQAAKARNEAMDHLLLYGPPGLGKTTMSLILATEMEVN 114

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + T+ P + +  D+  LL NL+  D+LFIDEIHRLS + EE+LYPAMED++LD+ +G+G
Sbjct: 115 CKITAAPALERPRDIVGLLVNLKPGDILFIDEIHRLSRMTEELLYPAMEDYRLDITIGKG 174

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            SA++  I L +FTL+ ATTRVG LT+PL+DRFG+  RL FYEI++L  IV R A+L   
Sbjct: 175 QSAKTRSIPLPQFTLVGATTRVGSLTSPLRDRFGMIQRLRFYEIDELSLIVTRTAQLLKA 234

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
           AVT++ A EIA RSRGTPRIA RLLRRVRD+A+V   + I +++A  A+    +D MG D
Sbjct: 235 AVTEDGAEEIARRSRGTPRIANRLLRRVRDYAQVKGIEQINQDVAAQAMEIFNVDPMGLD 294

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             D   L ++   F GGPVG+E ++A   E    IE++ EPY++Q GF+ RTPRGR+   
Sbjct: 295 WTDRLVLKVMIEQFNGGPVGLEAVAASTGEDAQTIEEVYEPYLLQIGFLHRTPRGRVATS 354

Query: 322 IAWQHLGID 330
            A +HLG +
Sbjct: 355 AARKHLGYE 363


>gi|318057101|ref|ZP_07975824.1| Holliday junction DNA helicase RuvB [Streptomyces sp. SA3_actG]
          Length = 356

 Score =  315 bits (806), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 158/328 (48%), Positives = 221/328 (67%), Gaps = 1/328 (0%)

Query: 7   LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           L+      ED  + + LRP+ L+EF GQ +    L + ++AA+AR    DHVL  G PGL
Sbjct: 18  LVDAGADTEDTAVEAALRPKDLDEFIGQEKVREQLDLVLKAARARGATADHVLLSGAPGL 77

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTL+ ++A E+    R TSGP I  AGDLAA+L++L++ +VLF+DEIHR+S   EE+L
Sbjct: 78  GKTTLSMIIAAEMAAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEML 137

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           Y AMEDF++D++VG+GP A ++ ++L  FTL+ ATTR GLL  PL+DRFG    + FY  
Sbjct: 138 YMAMEDFRVDVIVGKGPGATAIPLDLPPFTLVGATTRAGLLPPPLRDRFGFTAHMEFYAP 197

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
            +L+ ++ R A+L  +A+    A EIA RSRGTPRIA RLLRRVRD+A+V     IT EI
Sbjct: 198 AELERVIHRSARLLDVAIDAAGAAEIAGRSRGTPRIANRLLRRVRDYAQVKADGHITVEI 257

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           A AAL    +D  G D+LD   L  + + F GGPVG+ T+S  + E R+ +E++ EP+++
Sbjct: 258 ASAALGVYEVDARGLDRLDRAVLEALLKLFSGGPVGLSTLSVAVGEERETVEEVAEPFLV 317

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           ++GF+ RTPRGR+  P AW HLG+  P 
Sbjct: 318 REGFLARTPRGRVATPAAWAHLGLAPPQ 345


>gi|466823|gb|AAA17098.1| ruvB [Mycobacterium leprae]
          Length = 369

 Score =  315 bits (806), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 154/308 (50%), Positives = 214/308 (69%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRS 84
           R+L EF GQ      L++ IE AK R    DH+L  GPPGLGKT+LA ++A ELG + R 
Sbjct: 48  RSLREFIGQPRVREQLQLVIEGAKNRGATPDHILLSGPPGLGKTSLAMIIAAELGSSLRM 107

Query: 85  TSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSA 144
           TSGP + +AGDLA +L+NL + DVLFIDEIHR++   EE+LY AMEDF++D++VG+GP A
Sbjct: 108 TSGPALERAGDLAVMLSNLVEHDVLFIDEIHRIARPAEEMLYLAMEDFRVDVIVGKGPGA 167

Query: 145 RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVT 204
            S+ + ++ FTL+ ATTR G LT PL+DRFG    ++FYE  +L+ ++ R A + G+ + 
Sbjct: 168 TSIPLEVAPFTLVGATTRSGALTGPLRDRFGFTAHMDFYEPTELEGVLARAAGILGIELG 227

Query: 205 DEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLD 264
            EA  EIA RSRGTPRIA RLLRRVRDFAEV     ITR++A AAL    +D++G D+LD
Sbjct: 228 VEAGAEIARRSRGTPRIANRLLRRVRDFAEVRADGVITRDVAKAALAVYDVDELGLDRLD 287

Query: 265 LRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAW 324
              L+ + R+FGGGPVG+ T++  + E    +E++ EP++++ G + RTPRGR+    AW
Sbjct: 288 RAVLSALTRSFGGGPVGVSTLAVAVGEEATTVEEVCEPFLVRAGMVARTPRGRVATAQAW 347

Query: 325 QHLGIDIP 332
            +L +  P
Sbjct: 348 TYLCMTPP 355


>gi|300866394|ref|ZP_07111092.1| Holliday junction ATP-dependent DNA helicase ruvB [Oscillatoria sp.
           PCC 6506]
 gi|300335604|emb|CBN56252.1| Holliday junction ATP-dependent DNA helicase ruvB [Oscillatoria sp.
           PCC 6506]
          Length = 367

 Score =  315 bits (806), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 155/307 (50%), Positives = 213/307 (69%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  L ++ GQ +    L + ++AAK+R E LDH+L  GPPGLGKTT++ ++A E+GVN
Sbjct: 55  IRPHRLADYIGQKDLKEFLAIALQAAKSRNEPLDHLLLYGPPGLGKTTMSLIIAEEMGVN 114

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + T+ P + K  D+  LL +L+  DVLF+DEIHRLS + EEILYPAMED +LD+ +G+G
Sbjct: 115 CKITTAPALEKPRDIVGLLVSLKAGDVLFLDEIHRLSKVAEEILYPAMEDCRLDITIGQG 174

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            +A++  I L  FTL+ ATT+VG LT PL+DRFG   RL FYEI++L +IV R A++   
Sbjct: 175 KTAKTRSIPLKPFTLVGATTKVGSLTAPLRDRFGFIQRLRFYEIDELTSIVLRSAQVLDT 234

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T E A EIA R+RGTPRIA RLLRRVRD++EV +   I  E+A  +L    +D +G D
Sbjct: 235 PITTEGAQEIARRARGTPRIANRLLRRVRDYSEVKNLTPIDAEVASISLELFNVDPLGLD 294

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             D   L+ +  +F GGPVG+ETI+A   E    IE++ EPY++Q GF+QRT RGR+  P
Sbjct: 295 WTDRLILSRMIESFNGGPVGLETIAAATGEDSQTIEEVCEPYLMQIGFMQRTNRGRIATP 354

Query: 322 IAWQHLG 328
            AW+HLG
Sbjct: 355 AAWKHLG 361


>gi|331697369|ref|YP_004333608.1| Holliday junction ATP-dependent DNA helicase ruvB [Pseudonocardia
           dioxanivorans CB1190]
 gi|326952058|gb|AEA25755.1| Holliday junction ATP-dependent DNA helicase ruvB [Pseudonocardia
           dioxanivorans CB1190]
          Length = 346

 Score =  314 bits (805), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 157/323 (48%), Positives = 220/323 (68%), Gaps = 1/323 (0%)

Query: 11  NVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
            V +ED D+   LRPR L EF GQ      L++ +E A+ R    DH+L  GPPGLGKT+
Sbjct: 12  EVLEEDLDVEGTLRPRRLSEFIGQPRVREQLELVLEGARRRGTPPDHILLSGPPGLGKTS 71

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           L+ +VA ELG   R TSGP + +AGDLAA+L+NL   DVLFIDEIHR++   EE+LY AM
Sbjct: 72  LSMIVAAELGAAIRLTSGPALERAGDLAAMLSNLMPGDVLFIDEIHRIARPAEEMLYLAM 131

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           EDF++D++VG+GP A S+ ++++ FTL+ ATTR G LT PL+DRFG    + FYE  +L+
Sbjct: 132 EDFRVDVVVGKGPGATSIPLDIAPFTLVGATTRAGALTGPLRDRFGFTGHMEFYEPAELE 191

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            +++R A +  + +  + A EIA RSRGTPRIA RLLRRVRDFAEV     +T ++A  A
Sbjct: 192 LVLRRAAAILEVDLRPDGAAEIARRSRGTPRIANRLLRRVRDFAEVRADGAVTLDVAREA 251

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           L    +D++G D+LD   L+ + ++FGGGPVG+ T++  + E    +E++ EPY+++ G 
Sbjct: 252 LAVYDVDELGLDRLDRAVLSALVKSFGGGPVGVSTLAVAVGEEPGTVEEVCEPYLVRAGM 311

Query: 310 IQRTPRGRLLMPIAWQHLGIDIP 332
           + RTPRGR+    AW HLG+  P
Sbjct: 312 LARTPRGRVATAAAWGHLGVTPP 334


>gi|296117791|ref|ZP_06836374.1| holliday junction DNA helicase RuvB [Corynebacterium ammoniagenes
           DSM 20306]
 gi|295969022|gb|EFG82264.1| holliday junction DNA helicase RuvB [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 359

 Score =  314 bits (805), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 151/311 (48%), Positives = 213/311 (68%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L+EF GQ +    L + +  AK R    DHVL  GPPGLGKTT+A ++A+E+G +
Sbjct: 42  LRPKGLDEFIGQPKVKEQLSLVLTGAKNRGVTPDHVLLSGPPGLGKTTMAMIIAQEMGTS 101

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGP + +AGDLAA+L+NL + D+LFIDEIHR++   EE+LY AMEDF++D++VG+G
Sbjct: 102 LRMTSGPALERAGDLAAMLSNLMEGDILFIDEIHRIARPAEEMLYMAMEDFRIDVIVGKG 161

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P A S+ + +  FTL+ ATTR G+LT PL+DRFG   ++ +Y  +DL+ +V R A++ G+
Sbjct: 162 PGATSIPLEIPPFTLVGATTRAGMLTGPLRDRFGFTAQMEYYNNDDLEHVVTRAARILGV 221

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + ++AA EI  RSRGTPRIA RLLRRVRDFAEV     +    A  AL    +D MG D
Sbjct: 222 EIDNDAAVEIGSRSRGTPRIANRLLRRVRDFAEVNGDGHVDMAAARGALEVFDVDHMGLD 281

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           +LD   LT + +  GGGPVG+ T++  + E    +E++ EPY+++ G I R+ RGR+   
Sbjct: 282 RLDRAVLTALIKGHGGGPVGVNTLAIAVGEEPSTVEEVCEPYLVRAGMIARSARGRVATR 341

Query: 322 IAWQHLGIDIP 332
            AW+HLG+  P
Sbjct: 342 SAWEHLGMTPP 352


>gi|284991599|ref|YP_003410153.1| Holliday junction DNA helicase RuvB [Geodermatophilus obscurus DSM
           43160]
 gi|284064844|gb|ADB75782.1| Holliday junction DNA helicase RuvB [Geodermatophilus obscurus DSM
           43160]
          Length = 366

 Score =  314 bits (805), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 153/313 (48%), Positives = 214/313 (68%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           S LRP +L +F GQ +    L++ +E AK R    DHVL  GPPGLGKT+LA ++  ELG
Sbjct: 28  SALRPHSLTDFIGQPKVARQLELVLEGAKRRGRPPDHVLLSGPPGLGKTSLALIIGSELG 87

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
              + TSGP I ++GDLAA+L+NL   DVLFIDEIHR++   EE+LY AMEDF++D++VG
Sbjct: 88  TAVKITSGPAIERSGDLAAMLSNLAPGDVLFIDEIHRIARPAEELLYMAMEDFRVDVVVG 147

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199
           +GP A ++ + ++ FTL+ ATTR GLLT PL+DRFG   ++ FYE  +L+ ++ R A L 
Sbjct: 148 KGPGATAIPLEINPFTLVGATTRAGLLTGPLRDRFGFVGQMEFYEPAELQLVLARSAALL 207

Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259
           G+ +T + + EIA RSRGTPRIA RLLRRVRD+AEV     +TR +A+AAL    +D +G
Sbjct: 208 GVELTADGSAEIAGRSRGTPRIANRLLRRVRDYAEVRADGRVTRAVAEAALALYDVDHLG 267

Query: 260 FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLL 319
            D+LD   L  +   F GGPVG+ T++  + E    +E++ EP++++ G + RTPRGR+ 
Sbjct: 268 LDRLDRAVLEALVMRFSGGPVGVATLAVAVGEEPHTVEEVCEPFLVRAGLLARTPRGRVA 327

Query: 320 MPIAWQHLGIDIP 332
              AW HLG  +P
Sbjct: 328 TEAAWHHLGQPVP 340


>gi|311739556|ref|ZP_07713391.1| crossover junction ATP-dependent DNA helicase RuvB [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311305372|gb|EFQ81440.1| crossover junction ATP-dependent DNA helicase RuvB [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 359

 Score =  314 bits (805), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 154/340 (45%), Positives = 222/340 (65%), Gaps = 12/340 (3%)

Query: 5   EGLLSRNVSQEDADISL------------LRPRTLEEFTGQVEACSNLKVFIEAAKARAE 52
           EG+ + + +Q ++D+              LRP++LEEF GQ +    L + ++ AK R  
Sbjct: 13  EGVDAAHTTQRNSDVDATAHSEEHDIERSLRPKSLEEFIGQPKVREQLSLVLKGAKNRGV 72

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID 112
             DHVL  GPPGLGKTT+A ++++ELG + R TSGP + +AGDLAA+L+NL + DVLFID
Sbjct: 73  TPDHVLLSGPPGLGKTTMAMIISQELGTSLRMTSGPALERAGDLAAMLSNLMEGDVLFID 132

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           EIHR++   EE+LY AMEDF++D++VG+GP A S+ + +  FTL+ ATTR G+LT PL+D
Sbjct: 133 EIHRIARPAEEMLYMAMEDFRIDVIVGKGPGATSIPLEIPPFTLVGATTRAGMLTGPLRD 192

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           RFG   ++ +Y+  DL  +++R A +  + +  +AA EI  RSRGTPRIA RLLRRVRD+
Sbjct: 193 RFGFTAQMEYYDTADLTQVIKRAAHILDVEIDHDAAVEIGSRSRGTPRIANRLLRRVRDY 252

Query: 233 AEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEP 292
           AEV     I    A  AL    +D MG D+LD   L  + +  GGGPVG+ T++  + E 
Sbjct: 253 AEVNGTGLIDLSAAQGALEVFDVDDMGLDRLDRAVLNALIKGHGGGPVGVSTLAIAVGEE 312

Query: 293 RDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
              +E++ EPY+++ G + RT RGR+    AW+HLG+  P
Sbjct: 313 PSTVEEVCEPYLVRAGMVARTGRGRVATAAAWRHLGLTPP 352


>gi|182439810|ref|YP_001827529.1| Holliday junction DNA helicase RuvB [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326780474|ref|ZP_08239739.1| Holliday junction ATP-dependent DNA helicase ruvB [Streptomyces cf.
           griseus XylebKG-1]
 gi|238689025|sp|B1W3G4|RUVB_STRGG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|178468326|dbj|BAG22846.1| putative Holliday junction DNA helicase subunit A [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326660807|gb|EGE45653.1| Holliday junction ATP-dependent DNA helicase ruvB [Streptomyces cf.
           griseus XylebKG-1]
          Length = 361

 Score =  314 bits (804), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 158/328 (48%), Positives = 221/328 (67%), Gaps = 1/328 (0%)

Query: 7   LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           L+  +   ED  + + LRP+ LEEF GQ +    L + ++AA+AR    DHVL  G PGL
Sbjct: 22  LVDADADGEDTAVEAALRPKDLEEFVGQEKVREQLDLVLKAARARGATADHVLLSGAPGL 81

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTL+ ++A E+    R TSGP I  AGDLAA+L++L++ +VLF+DEIHR+S   EE+L
Sbjct: 82  GKTTLSMIIAAEMNAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEML 141

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           Y AMEDF++D++VG+GP A ++ + L  FTL+ ATTR GLL  PL+DRFG    + FY  
Sbjct: 142 YMAMEDFRVDVIVGKGPGATAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTGHMEFYAP 201

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
            +L+ ++ R A+L  + +  E A EIA RSRGTPRIA RLLRRVRD+A+V    TI R I
Sbjct: 202 AELERVLHRSARLLDVGIDGEGAAEIAGRSRGTPRIANRLLRRVRDYAQVKAEGTIDRSI 261

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           A AAL    +D  G D+LD   L  + + FGGGPVG+ T++  + E R+ +E++ EP+++
Sbjct: 262 AMAALKVYEVDARGLDRLDRAVLGALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPFLV 321

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           ++G + RTPRGR+  P AW HLG+  P 
Sbjct: 322 REGLLARTPRGRVATPAAWAHLGLVPPQ 349


>gi|239978431|ref|ZP_04700955.1| Holliday junction DNA helicase RuvB [Streptomyces albus J1074]
 gi|291450327|ref|ZP_06589717.1| holliday junction DNA helicase B [Streptomyces albus J1074]
 gi|291353276|gb|EFE80178.1| holliday junction DNA helicase B [Streptomyces albus J1074]
          Length = 361

 Score =  314 bits (804), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 155/313 (49%), Positives = 215/313 (68%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L EF GQ +  + L + ++AA+AR    DHVL  G PGLGKTTL+ ++A E+   
Sbjct: 36  LRPKELGEFIGQEKVRAQLDLVLKAARARGATADHVLLSGAPGLGKTTLSMIIAAEMEAP 95

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGP I  AGDLAA+L++L++ +VLF+DEIHR+S   EE+LY AMEDF++D++VG+G
Sbjct: 96  IRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDVIVGKG 155

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P A ++ + L  FTL+ ATTR GLL  PL+DRFG    + FY   +L+ +V R A+L  +
Sbjct: 156 PGATAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTGHMEFYGPAELERVVHRSARLLDV 215

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  E A EIA RSRGTPRIA RLLRRVRD+A+V     + REIA AAL    +D  G D
Sbjct: 216 EIDTEGAAEIAGRSRGTPRIANRLLRRVRDYAQVKADGAVDREIASAALAVYEVDARGLD 275

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           +LD   L  + + FGGGPVG+ T+S  + E R+ +E++ EP+++++G + RTPRGR+  P
Sbjct: 276 RLDRSVLEALLKLFGGGPVGLSTLSVAVGEERETVEEVAEPFLVREGLLARTPRGRVATP 335

Query: 322 IAWQHLGIDIPHR 334
            AW HLG+  P +
Sbjct: 336 AAWAHLGLTPPRQ 348


>gi|297571394|ref|YP_003697168.1| Holliday junction DNA helicase RuvB [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296931741|gb|ADH92549.1| Holliday junction DNA helicase RuvB [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 338

 Score =  314 bits (804), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 162/319 (50%), Positives = 218/319 (68%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E A  + LRP+ LE+F GQ      L + ++AA AR +A DHVL  GPPGLGKTTLA ++
Sbjct: 15  ERAQEAALRPKRLEDFVGQQIVREQLSLVLDAAIARQKAPDHVLLSGPPGLGKTTLAMII 74

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A E+G   R TSGP I   GDLAA+L++L++ DVLFIDEIHRL+   EE+LY AMEDF++
Sbjct: 75  AAEVGGALRLTSGPAIQHPGDLAAVLSSLQEGDVLFIDEIHRLARTAEEMLYLAMEDFRV 134

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D+MVG+GP A S+ + L  FT++ ATTR G+L  PL+DRFG    L++Y  E+L +IV+R
Sbjct: 135 DVMVGKGPGATSIPLALPPFTVVGATTRAGMLPAPLRDRFGFTAYLDYYTHEELASIVER 194

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A      ++ +AA EIA RSRGTPRIA RLLRRV+D+A+V     +  E A +AL    
Sbjct: 195 NAIKLDAELSADAAVEIASRSRGTPRIANRLLRRVQDWAQVRGTGKLDVEAARSALNVFE 254

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D  G D+LD   L  + R F GGPVG+ T++  + E  + IE + EPY+++QGFI +TP
Sbjct: 255 VDLRGLDRLDRAVLEALCRRFNGGPVGLTTLAVSVGEEPETIETVAEPYLMRQGFISKTP 314

Query: 315 RGRLLMPIAWQHLGIDIPH 333
           RGR+  P+AW+HLGI  P 
Sbjct: 315 RGRIATPMAWEHLGIIPPE 333


>gi|283783299|ref|YP_003374053.1| Holliday junction DNA helicase RuvB [Gardnerella vaginalis 409-05]
 gi|283441733|gb|ADB14199.1| Holliday junction DNA helicase RuvB [Gardnerella vaginalis 409-05]
          Length = 353

 Score =  313 bits (803), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 157/311 (50%), Positives = 214/311 (68%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPR LE F GQ    + L++F++AAK R  A DH+L  GPPGLGKTTLA +VA EL V 
Sbjct: 36  LRPRALEGFIGQPVLKAQLQLFLDAAKKRDVAPDHMLLAGPPGLGKTTLAMIVANELQVP 95

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGP I  AGDLA++L+ L+  +VLFIDEIHRL    EE+LY AMEDF++D+MVG+G
Sbjct: 96  IRITSGPAIQHAGDLASILSALDAGEVLFIDEIHRLPRAAEELLYIAMEDFRVDVMVGKG 155

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P A S+ + L RFT++ ATTR G+L +PL+ RFG    L+FY  E+L+ +++R AK+ G+
Sbjct: 156 PGASSIPLTLPRFTVVGATTREGMLPSPLRARFGFTAHLDFYPHEELEKLIERSAKVLGI 215

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + D+AA E+++RSRGTPRIA RLLRRVRD+A V     +  E    AL    ID  G D
Sbjct: 216 RLIDQAAKELSLRSRGTPRIANRLLRRVRDWAIVHDLSEVNHEAVVEALALYQIDTQGLD 275

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           +LD+  L  +   F GGPVG+  ++A + E  + +E + EPY++++GF+ RTP+GR+   
Sbjct: 276 RLDIAVLKAMVCQFNGGPVGLNNLAAMVGEEAETVETVCEPYLVREGFLIRTPKGRVATS 335

Query: 322 IAWQHLGIDIP 332
            AW+HLG   P
Sbjct: 336 KAWKHLGFKEP 346


>gi|295839917|ref|ZP_06826850.1| Holliday junction DNA helicase RuvB [Streptomyces sp. SPB74]
 gi|197696746|gb|EDY43679.1| Holliday junction DNA helicase RuvB [Streptomyces sp. SPB74]
          Length = 356

 Score =  313 bits (803), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 157/328 (47%), Positives = 220/328 (67%), Gaps = 1/328 (0%)

Query: 7   LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           L+      ED  + + LRP+ L+EF GQ +    L + ++AA+AR    DHVL  G PGL
Sbjct: 18  LVDAGADTEDTAVEAALRPKDLDEFIGQEKVREQLDLVLKAARARGATADHVLLSGAPGL 77

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTL+ ++A E+    R TSGP I  AGDLAA+L++L++ +VLF+DEIHR+S   EE+L
Sbjct: 78  GKTTLSMIIAAEMAAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEML 137

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           Y AMEDF++D++VG+GP A ++ + L  FTL+ ATTR GLL  PL+DRFG    + FY  
Sbjct: 138 YMAMEDFRVDVIVGKGPGATAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTAHMEFYAP 197

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
            +L+ ++ R A+L  +A+    A EIA RSRGTPRIA RLLRRVRD+A+V     IT +I
Sbjct: 198 AELERVIHRSAQLLDVAIDPAGAAEIAGRSRGTPRIANRLLRRVRDYAQVKADGHITEDI 257

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           A AAL    +D  G D+LD   L  + + FGGGPVG+ T+S  + E R+ +E++ EP+++
Sbjct: 258 ASAALGVYEVDARGLDRLDRAVLEALLKLFGGGPVGLSTLSVAVGEERETVEEVAEPFLV 317

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           ++G + RTPRGR+  P AW HLG+  P 
Sbjct: 318 REGLLARTPRGRVATPAAWAHLGLAPPQ 345


>gi|227495488|ref|ZP_03925804.1| crossover junction endoribonuclease subunit B [Actinomyces
           coleocanis DSM 15436]
 gi|226831035|gb|EEH63418.1| crossover junction endoribonuclease subunit B [Actinomyces
           coleocanis DSM 15436]
          Length = 337

 Score =  313 bits (803), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 159/332 (47%), Positives = 222/332 (66%), Gaps = 1/332 (0%)

Query: 2   MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD   +++ + S+ +  + + LRPR L +F GQ + C  L++ + AA+ R  + DHVL  
Sbjct: 1   MDNNSIVNASASESERAVEAALRPRKLTDFIGQPKVCEQLELVLTAAQNRGVSPDHVLLA 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTL+ ++A ELG + R TSGP I  AGDLAA+L++L++ DVLFIDEIHRL+  
Sbjct: 61  GPPGLGKTTLSMIIAAELGASLRLTSGPAIQHAGDLAAILSSLQEGDVLFIDEIHRLART 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            EE+LY AMEDF++D++VG+GP A S+ + L  FT++ ATTR GLL  PL+DRFG    L
Sbjct: 121 AEEMLYLAMEDFRVDVIVGKGPGATSIPLTLPPFTVVGATTRSGLLPAPLRDRFGFTAHL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y+  +L+ +V+R A+L    +  EAA EIA RSRGTPRIA RLLRRV DFA+V     
Sbjct: 181 EYYDAAELQKVVERSARLLETEIDVEAAAEIAGRSRGTPRIANRLLRRVVDFAQVHGNGV 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           + R  A AAL    +D  G D+LD   L  +   F GGPVG+ T++  + E  + +E + 
Sbjct: 241 VDRAAAQAALTLFEVDPEGLDRLDRAVLETLCTRFNGGPVGLTTLAITVGEEPETVETVA 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EPY++++GF+ RT RGR     AW+HLG+  P
Sbjct: 301 EPYLVREGFVIRTTRGRAATRKAWEHLGLIPP 332


>gi|298252763|ref|ZP_06976557.1| Holliday junction resolvasome, helicase subunit [Gardnerella
           vaginalis 5-1]
 gi|297533127|gb|EFH72011.1| Holliday junction resolvasome, helicase subunit [Gardnerella
           vaginalis 5-1]
          Length = 371

 Score =  313 bits (803), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 157/311 (50%), Positives = 214/311 (68%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPR LE F GQ    + L++F++AAK R  A DH+L  GPPGLGKTTLA +VA EL V 
Sbjct: 54  LRPRALEGFIGQPVLKAQLQLFLDAAKKRDVAPDHMLLAGPPGLGKTTLAMIVANELQVP 113

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGP I  AGDLA++L+ L+  +VLFIDEIHRL    EE+LY AMEDF++D+MVG+G
Sbjct: 114 IRITSGPAIQHAGDLASILSALDAGEVLFIDEIHRLPRAAEELLYIAMEDFRVDVMVGKG 173

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P A S+ + L RFT++ ATTR G+L +PL+ RFG    L+FY  E+L+ +++R AK+ G+
Sbjct: 174 PGASSIPLTLPRFTVVGATTREGMLPSPLRARFGFTAHLDFYPHEELEKLIERSAKVLGI 233

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + D+AA E+++RSRGTPRIA RLLRRVRD+A V     +  E    AL    ID  G D
Sbjct: 234 RLIDQAAKELSLRSRGTPRIANRLLRRVRDWAIVHDLSEVNHEAVVEALALYQIDTQGLD 293

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           +LD+  L  +   F GGPVG+  ++A + E  + +E + EPY++++GF+ RTP+GR+   
Sbjct: 294 RLDIAVLKAMVCQFNGGPVGLNNLAAMVGEEAETVETVCEPYLVREGFLIRTPKGRVATS 353

Query: 322 IAWQHLGIDIP 332
            AW+HLG   P
Sbjct: 354 KAWKHLGFKEP 364


>gi|218438533|ref|YP_002376862.1| Holliday junction DNA helicase RuvB [Cyanothece sp. PCC 7424]
 gi|226725455|sp|B7K9M6|RUVB_CYAP7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|218171261|gb|ACK69994.1| Holliday junction DNA helicase RuvB [Cyanothece sp. PCC 7424]
          Length = 366

 Score =  313 bits (803), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 163/325 (50%), Positives = 219/325 (67%), Gaps = 4/325 (1%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           G L    + ED+    +RPR L ++ GQ E    LK+ I AAK R EALDH+L  GPPGL
Sbjct: 38  GRLEETEAAEDS----IRPRNLNDYIGQKELKEVLKIAIGAAKVRKEALDHLLLYGPPGL 93

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTT+A ++A E+GVN + T+ P + +  D+  LL NL+  D+LFIDEIHRL+ + EE+L
Sbjct: 94  GKTTMALILAAEMGVNCKITAAPALERPRDITGLLINLKPGDILFIDEIHRLNRMSEELL 153

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           YPAMED +LD+  G+G SA+   I LS FTLI ATT++G LT+PL+DRFG+  RL FYE+
Sbjct: 154 YPAMEDQRLDITTGKGKSAKIRSIPLSPFTLIGATTKIGALTSPLRDRFGLIQRLRFYEV 213

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           ++L  +V R AK+    + +E A EIA RSRGTPRIA RLL+RVRD+A V   ++IT  +
Sbjct: 214 DELCLVVLRTAKILNAKIKEEGALEIARRSRGTPRIANRLLKRVRDYALVKKIESITEAL 273

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           A  AL +L +D  G D  D   L  I + F GGPVG+ET++A   E    IE++ EPY++
Sbjct: 274 AAEALDKLNVDSRGLDWTDRLVLDTIIQQFRGGPVGLETVAAATGEDAKTIEEVYEPYLL 333

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGID 330
           Q G++ RT RGR+    A+QHLG D
Sbjct: 334 QIGYLNRTSRGRIATEAAYQHLGYD 358


>gi|294786922|ref|ZP_06752176.1| holliday junction DNA helicase RuvB [Parascardovia denticolens
           F0305]
 gi|315226558|ref|ZP_07868346.1| crossover junction ATP-dependent DNA helicase RuvB [Parascardovia
           denticolens DSM 10105]
 gi|294485755|gb|EFG33389.1| holliday junction DNA helicase RuvB [Parascardovia denticolens
           F0305]
 gi|315120690|gb|EFT83822.1| crossover junction ATP-dependent DNA helicase RuvB [Parascardovia
           denticolens DSM 10105]
          Length = 366

 Score =  313 bits (803), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 155/313 (49%), Positives = 217/313 (69%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP TL+ F GQ +  + L +F++AA+ R    DH+L  GPPGLGKTTL+ +VA+ELGV 
Sbjct: 45  LRPATLDTFIGQPQLKAQLGLFLQAAQKRGVPPDHILLAGPPGLGKTTLSMIVAKELGVP 104

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGP I  AGDLA++L++L++ +VLFIDEIHRL    EE+LY AMEDF++D+MVG+G
Sbjct: 105 IRVTSGPAIQHAGDLASILSSLDEGEVLFIDEIHRLPRAAEELLYIAMEDFRVDVMVGKG 164

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P A S+ + L RFT I ATTR G+L +PL+ RFG    L++Y   +L+ +++R A +  +
Sbjct: 165 PGASSIPLTLPRFTAIGATTREGMLPSPLRARFGFTAHLDYYPKSELERLIKRSALVLNM 224

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + D+A  E+A+RSRGTPR+A RLLRRVRD+  V   +TI  E    AL    IDK G D
Sbjct: 225 TIDDQATRELALRSRGTPRVANRLLRRVRDWGIVHGLETIDAEAVIDALELYQIDKEGLD 284

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           +LD+  LT + + F GGPVG+  +SA + E  + +E + EPY++++GF+ RTPRGR    
Sbjct: 285 RLDIAVLTALCKQFKGGPVGLNNLSAMVGEEAETVETVCEPYLVREGFLVRTPRGRAATD 344

Query: 322 IAWQHLGIDIPHR 334
            AW+HLG+  P +
Sbjct: 345 RAWKHLGLQPPEQ 357


>gi|72383030|ref|YP_292385.1| Holliday junction DNA helicase RuvB [Prochlorococcus marinus str.
           NATL2A]
 gi|97190202|sp|Q46IJ6|RUVB_PROMT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|72002880|gb|AAZ58682.1| Holliday junction DNA helicase subunit RuvB [Prochlorococcus
           marinus str. NATL2A]
          Length = 356

 Score =  313 bits (802), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 152/324 (46%), Positives = 226/324 (69%), Gaps = 5/324 (1%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
            +SQ+D+    LRP++ ++F GQ E    L++ ++A+  R EALDH++  GPPGLGKTT+
Sbjct: 33  KLSQQDS----LRPKSFDDFVGQSELKKVLEISVKASLKRGEALDHLMLYGPPGLGKTTM 88

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           A V+A ELGV  R TS P + +  D+  LL N++ R+++F+DEIHRL+ I +E+LYPAME
Sbjct: 89  ALVIAEELGVKARVTSAPALERPRDIVGLLINIQPRELIFVDEIHRLNRISQELLYPAME 148

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           D +LDL VG+G S+R   I +  FTL+ ATT+   L++P++DRFGI  RL+FY   DL+ 
Sbjct: 149 DRRLDLTVGKGTSSRMRSIEIPPFTLVGATTKPAALSSPMRDRFGITQRLDFYNYLDLEN 208

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV-AHAKTITREIADAA 249
           I++R AKL  L +++EA+ ++A R RGTPRIA RL+RRVRD+AEV +H+K I  E+ + A
Sbjct: 209 IIKRSAKLINLVISEEASQQLAKRCRGTPRIANRLIRRVRDYAEVYSHSKKIDVEVVNDA 268

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           L    +D+ G D  D  Y+ ++   + GGPVG+ET++AGL E    +E ++EPY++Q GF
Sbjct: 269 LDLHRVDQRGLDATDRSYIGLLVNQYQGGPVGLETLAAGLGEDSTTLETVVEPYLMQIGF 328

Query: 310 IQRTPRGRLLMPIAWQHLGIDIPH 333
           + RT RGR++ P A +H  +  P+
Sbjct: 329 LHRTSRGRVVTPAAKKHYLLTSPN 352


>gi|255325095|ref|ZP_05366201.1| holliday junction DNA helicase RuvB [Corynebacterium
           tuberculostearicum SK141]
 gi|255297660|gb|EET76971.1| holliday junction DNA helicase RuvB [Corynebacterium
           tuberculostearicum SK141]
          Length = 359

 Score =  313 bits (802), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 153/320 (47%), Positives = 215/320 (67%), Gaps = 1/320 (0%)

Query: 14  QEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
            E+ DI   LRP++L+EF GQ +    L + I+ AK R    DHVL  GPPGLGKTT+A 
Sbjct: 33  SEEHDIERSLRPKSLDEFIGQPKVREQLSLVIKGAKNRGVTPDHVLLSGPPGLGKTTMAM 92

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++++ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++   EE+LY AMEDF
Sbjct: 93  IISQELGTSLRMTSGPALERAGDLAAMLSNLMEGDVLFIDEIHRIARPAEEMLYMAMEDF 152

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           ++D++VG+GP A S+ + +  FTL+ ATTR G+LT PL+DRFG   ++ +Y+  DL  ++
Sbjct: 153 RIDVIVGKGPGATSIPLEIPPFTLVGATTRAGMLTGPLRDRFGFTAQMEYYDTADLTQVI 212

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           +R A +  + +  +AA EI  RSRGTPRIA RLLRRVRD+AEV     I    A  AL  
Sbjct: 213 KRAAHILDVEIDHDAAVEIGSRSRGTPRIANRLLRRVRDYAEVNGTGLIDLSAAQGALEV 272

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
             +D MG D+LD   L  + +  GGGPVG+ T++  + E    +E++ EPY+++ G + R
Sbjct: 273 FDVDDMGLDRLDRAVLNALIKGHGGGPVGVSTLAIAVGEEPSTVEEVCEPYLVRAGMVAR 332

Query: 313 TPRGRLLMPIAWQHLGIDIP 332
           T RGR+    AW+HLG+  P
Sbjct: 333 TGRGRVATAAAWRHLGLTPP 352


>gi|212715819|ref|ZP_03323947.1| hypothetical protein BIFCAT_00720 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661186|gb|EEB21761.1| hypothetical protein BIFCAT_00720 [Bifidobacterium catenulatum DSM
           16992]
          Length = 357

 Score =  313 bits (802), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 158/318 (49%), Positives = 216/318 (67%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           V  E      LRP  L+ F GQ    + L++F++AA+ R    DH+L  GPPGLGKTTLA
Sbjct: 27  VGNEPVSDEELRPHVLDGFIGQPRLKAQLQLFLDAARKRDVPPDHILLAGPPGLGKTTLA 86

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            +VA ELGV  R TSGP I  AGDLA++L++L+  +VLFIDEIHRL    EE+LY AMED
Sbjct: 87  MIVANELGVPIRVTSGPAIQHAGDLASILSSLDAGEVLFIDEIHRLPRAAEELLYIAMED 146

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F++D+MVG+GP A S+ + L RFT+I ATTR G+L +PL+ RFG    L+FY  E+L+ +
Sbjct: 147 FRVDVMVGKGPGASSIPLTLPRFTVIGATTREGMLPSPLRARFGFTAHLDFYPHEELEKL 206

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           ++R + + G+ + D AA ++AMRSRGTPRIA RLLRRVRD+A V   +T+       AL 
Sbjct: 207 IERSSAVLGIRLEDGAAHQLAMRSRGTPRIANRLLRRVRDWAIVHDLETVHPNDVKEALA 266

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
              ID  G D+LD+  L  I  NF GGPVG+  +SA + E  + +E + EPY++++GF+ 
Sbjct: 267 LYQIDTEGLDRLDIAVLKAIVTNFNGGPVGLNNLSAMVGEESETVETVCEPYLVREGFLV 326

Query: 312 RTPRGRLLMPIAWQHLGI 329
           RTP+GR+    AW+HLG+
Sbjct: 327 RTPKGRVATRKAWEHLGL 344


>gi|317968453|ref|ZP_07969843.1| Holliday junction DNA helicase RuvB [Synechococcus sp. CB0205]
          Length = 329

 Score =  313 bits (802), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 162/306 (52%), Positives = 213/306 (69%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L ++ GQ E    L + IEA +AR EALDHVL  GPPGLGKTT+A V+A ELGV 
Sbjct: 19  LRPKQLADYIGQSELKQVLGIAIEATRARDEALDHVLLYGPPGLGKTTMAMVLAEELGVR 78

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TS P + +  D+  LL NL+ R++LFIDEIHRL+ + EE+LYPAMEDF+LDL VG+G
Sbjct: 79  CRITSAPALERPRDIVGLLVNLQPRELLFIDEIHRLTRVAEELLYPAMEDFRLDLTVGKG 138

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            +AR+  I L+ FTL+ ATTR G L++PL+DRFG+  RL FY +EDL+ IVQR A L  L
Sbjct: 139 TTARTRTIPLAPFTLVGATTRAGSLSSPLRDRFGLIQRLEFYGLEDLQAIVQRAAGLLAL 198

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + +EAA E+A R RGTPRIA RLLRRVRD A V     ++ E+   AL    +D  G D
Sbjct: 199 DLAEEAALEVARRCRGTPRIANRLLRRVRDVASVGGHARVSAELVQQALSLHRVDGRGLD 258

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             D R L ++   +GGGPVG++T++AGL E    +E ++EP+++QQG +QRTPRGR++  
Sbjct: 259 ASDRRLLDLLHNGYGGGPVGLDTLAAGLGEDPVTLESVVEPFLLQQGLLQRTPRGRVITQ 318

Query: 322 IAWQHL 327
               HL
Sbjct: 319 AGIDHL 324


>gi|189218507|ref|YP_001939148.1| Holliday junction resolvasome, helicase subunit RuvB
           [Methylacidiphilum infernorum V4]
 gi|189185365|gb|ACD82550.1| Holliday junction resolvasome, helicase subunit RuvB
           [Methylacidiphilum infernorum V4]
          Length = 350

 Score =  313 bits (802), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 147/311 (47%), Positives = 222/311 (71%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L+EF GQ +    L + ++AAK + E L H+LF GPPGLGKTTLA ++++E+  +
Sbjct: 33  LRPQKLDEFLGQEKIRERLYILVQAAKIKNEPLPHLLFSGPPGLGKTTLAHILSKEMNAS 92

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGP + KA +LA +LT+LE  DVLFIDEIHRLS  VEE LYPAMEDF++D+++ +G
Sbjct: 93  LKITSGPALDKAANLAGILTSLESFDVLFIDEIHRLSRPVEEYLYPAMEDFRMDILIDQG 152

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+++NL +FTL+ ATTRVGLLT PL+ RFG+  RL +Y++EDL  IVQR A++  +
Sbjct: 153 PNARSIRLNLPKFTLVGATTRVGLLTEPLRSRFGLINRLEYYKVEDLVRIVQRSARILEI 212

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            V ++AA E+A R RGTPR    LLR +RD+A     + ++ ++ + AL  + ID+ G D
Sbjct: 213 EVNEQAAKEVAKRCRGTPRTVNHLLRWIRDYAYAKGYQKVSLDVVNKALEMIEIDEDGLD 272

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           ++D + L  I   F GGPVG+++++  + E    +E++ EPY+I +G+++RTP+GR++  
Sbjct: 273 EMDKKILETIIYKFEGGPVGLQSLAVAVGEDPGTLEEVHEPYLILEGYLKRTPQGRVVTA 332

Query: 322 IAWQHLGIDIP 332
            A++ L   +P
Sbjct: 333 RAYEKLKAVLP 343


>gi|225352126|ref|ZP_03743149.1| hypothetical protein BIFPSEUDO_03741 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157373|gb|EEG70712.1| hypothetical protein BIFPSEUDO_03741 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 362

 Score =  313 bits (801), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 157/318 (49%), Positives = 217/318 (68%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           V  E      LRP  L+ F GQ    + L++F++AA+ R    DH+L  GPPGLGKTTLA
Sbjct: 32  VGNEPVSDEELRPHVLDGFIGQPRLKAQLQLFLDAARKRDVPPDHILLAGPPGLGKTTLA 91

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            +VA ELGV  R TSGP I  AGDLA++L++L+  +VLFIDEIHRL    EE+LY AMED
Sbjct: 92  MIVANELGVPIRVTSGPAIQHAGDLASILSSLDAGEVLFIDEIHRLPRAAEELLYIAMED 151

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F++D+MVG+GP A S+ + L RFT+I ATTR G+L +PL+ RFG    L+FY  E+L+ +
Sbjct: 152 FRVDVMVGKGPGASSIPLTLPRFTVIGATTREGMLPSPLRARFGFTAHLDFYPHEELEKL 211

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           ++R + + G+++ + AA ++AMRSRGTPRIA RLLRRVRD+A V   +T+  +    AL 
Sbjct: 212 IERSSSVLGISLEEGAAHQLAMRSRGTPRIANRLLRRVRDWAIVHDLETVHPDDVKEALA 271

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
              ID  G D+LD+  L  I  NF GGPVG+  +SA + E  + +E + EPY++++GF+ 
Sbjct: 272 LYQIDTEGLDRLDIAVLKAIVTNFNGGPVGLNNLSAMVGEESETVETVCEPYLVREGFLV 331

Query: 312 RTPRGRLLMPIAWQHLGI 329
           RTP+GR+    AW HLG+
Sbjct: 332 RTPKGRVATRKAWDHLGL 349


>gi|227504982|ref|ZP_03935031.1| crossover junction endodeoxyribonuclease [Corynebacterium striatum
           ATCC 6940]
 gi|227198432|gb|EEI78480.1| crossover junction endodeoxyribonuclease [Corynebacterium striatum
           ATCC 6940]
          Length = 367

 Score =  313 bits (801), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 150/312 (48%), Positives = 211/312 (67%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP++++EF GQ +    L + +  AK R    DHVL  GPPGLGKTT+A ++A+ELG +
Sbjct: 48  LRPKSIDEFIGQPKVREQLSLVLNGAKNRGVTPDHVLLSGPPGLGKTTMAMIIAQELGTS 107

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++   EE+LY AMEDF++D++VG+G
Sbjct: 108 LRMTSGPALERAGDLAAMLSNLMEGDVLFIDEIHRIARPAEEMLYMAMEDFRIDVIVGKG 167

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P A S+ + +  FTL+ ATTR G+LT PL+DRFG   ++ +Y+  DL  ++ R A +  +
Sbjct: 168 PGATSIPLEIPPFTLVGATTRAGMLTGPLRDRFGFTAQMEYYDTADLTKVITRAATILDV 227

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  +AA EI  RSRGTPRIA RLLRRVRDFAEV     I    A  AL    +D+MG D
Sbjct: 228 EIDQDAAVEIGSRSRGTPRIANRLLRRVRDFAEVNGDGHIDLAAAQGALAVFDVDEMGLD 287

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           +LD   L  + +  GGGPVG+ T++  + E    +E++ EPY+++ G I RT RGR+   
Sbjct: 288 RLDRAVLEALIKGHGGGPVGVNTLAVAVGEEPSTVEEVCEPYLVRAGMIARTGRGRVATA 347

Query: 322 IAWQHLGIDIPH 333
            AW+H+G++ P 
Sbjct: 348 AAWRHIGLEPPE 359


>gi|225166217|ref|ZP_03727926.1| Holliday junction DNA helicase RuvB [Opitutaceae bacterium TAV2]
 gi|224799539|gb|EEG18059.1| Holliday junction DNA helicase RuvB [Opitutaceae bacterium TAV2]
          Length = 353

 Score =  312 bits (800), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 158/308 (51%), Positives = 217/308 (70%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP +  +FTGQ +    L+V + AA+ R EAL+H+L  GPPGLGKTTL  ++  E+G N
Sbjct: 28  LRPLSFADFTGQPKTVERLQVMVGAARRRGEALNHILISGPPGLGKTTLCFILGHEMGKN 87

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGPV+ KAGDLA LLTNLE+ D+LFIDEIHR+   VEE LY AMEDF+LD+M+ +G
Sbjct: 88  VRVTSGPVVEKAGDLAGLLTNLEEGDILFIDEIHRIPKTVEEYLYSAMEDFRLDIMIDQG 147

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARSV++++ RFTL+ ATTR GLLT PL+ RF +  RL++Y++  L  IVQR   L  +
Sbjct: 148 PNARSVRLSIPRFTLVGATTRAGLLTAPLRSRFTLQTRLDYYDVPTLMGIVQRSCGLLKV 207

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + +  A EIA R+RGTPRIA  L+  VRDFA+      ITR  A AAL  L ID  G D
Sbjct: 208 TIDEAGAREIASRARGTPRIANNLINFVRDFAQERGDGRITRPAAAAALELLEIDAAGLD 267

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           ++D R L ++A N+ GGPVG+ TI+  + E  + +E++ EP++IQ+G++QRTP+GR+L  
Sbjct: 268 EMDKRMLRIMAENYRGGPVGLGTIAVAVGEESETLEEVHEPFLIQEGYLQRTPQGRVLTA 327

Query: 322 IAWQHLGI 329
             +  +G+
Sbjct: 328 KGYHAIGL 335


>gi|302517990|ref|ZP_07270332.1| Holliday junction DNA helicase RuvB [Streptomyces sp. SPB78]
 gi|302426885|gb|EFK98700.1| Holliday junction DNA helicase RuvB [Streptomyces sp. SPB78]
          Length = 356

 Score =  312 bits (800), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 157/328 (47%), Positives = 220/328 (67%), Gaps = 1/328 (0%)

Query: 7   LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           L+      ED  + + LRP+ L+EF GQ +    L + ++AA+AR    DHVL  G PGL
Sbjct: 18  LVDAGADTEDTAVEAALRPKDLDEFIGQEKVREQLDLVLKAARARGATADHVLLSGAPGL 77

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTL+ ++A E+    R TSGP I  AGDLAA+L++L++ +VLF+DEIHR+S   EE+L
Sbjct: 78  GKTTLSMIIAAEMAAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEML 137

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           Y AMEDF++D++VG+GP A ++ ++L  FTL+ ATTR GLL  PL+DRFG    + FY  
Sbjct: 138 YMAMEDFRVDVIVGKGPGATAIPLDLPPFTLVGATTRAGLLPPPLRDRFGFTAHMEFYAP 197

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
            +L+ ++ R A+L  +A+    A EIA RSRGTPRIA RLLRRVRD+A+V     IT EI
Sbjct: 198 AELERVIHRSARLLDVAIDAAGAAEIAGRSRGTPRIANRLLRRVRDYAQVKADGHITVEI 257

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           A AAL    +D  G D+LD   L  + + F GGPVG+ T+S  + E R+ +E++ EP+++
Sbjct: 258 ASAALGVYEVDARGLDRLDRAVLEALLKLFSGGPVGLSTLSVAVGEERETVEEVAEPFLV 317

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           ++G + RTPRGR+  P AW HLG+  P 
Sbjct: 318 REGLLARTPRGRVATPAAWAHLGLAPPQ 345


>gi|333028332|ref|ZP_08456396.1| putative holliday junction DNA helicase RuvB [Streptomyces sp.
           Tu6071]
 gi|332748184|gb|EGJ78625.1| putative holliday junction DNA helicase RuvB [Streptomyces sp.
           Tu6071]
          Length = 356

 Score =  312 bits (800), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 157/328 (47%), Positives = 220/328 (67%), Gaps = 1/328 (0%)

Query: 7   LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           L+      ED  + + LRP+ L+EF GQ +    L + ++AA+AR    DHVL  G PGL
Sbjct: 18  LVDAGADTEDTAVEAALRPKDLDEFIGQEKVREQLDLVLKAARARGATADHVLLSGAPGL 77

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTL+ ++A E+    R TSGP I  AGDLAA+L++L++ +VLF+DEIHR+S   EE+L
Sbjct: 78  GKTTLSMIIAAEMAAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEML 137

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           Y AMEDF++D++VG+GP A ++ ++L  FTL+ ATTR GLL  PL+DRFG    + FY  
Sbjct: 138 YMAMEDFRVDVIVGKGPGATAIPLDLPPFTLVGATTRAGLLPPPLRDRFGFTAHMEFYAP 197

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
            +L+ ++ R A+L  +A+    A EIA RSRGTPRIA RLLRRVRD+A+V     IT EI
Sbjct: 198 AELERVIHRSARLLDVAIDAAGAAEIAGRSRGTPRIANRLLRRVRDYAQVKADGHITVEI 257

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           A AAL    +D  G D+LD   L  + + F GGPVG+ T+S  + E R+ +E++ EP+++
Sbjct: 258 ASAALGVYEVDARGLDRLDRAVLEALLKLFSGGPVGLSTLSVAVGEERETVEEVAEPFLV 317

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           ++G + RTPRGR+  P AW HLG+  P 
Sbjct: 318 REGLLARTPRGRVATPAAWAHLGLAPPQ 345


>gi|317124982|ref|YP_004099094.1| Holliday junction DNA helicase subunit RuvB [Intrasporangium calvum
           DSM 43043]
 gi|315589070|gb|ADU48367.1| Holliday junction DNA helicase subunit RuvB [Intrasporangium calvum
           DSM 43043]
          Length = 367

 Score =  312 bits (799), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 156/311 (50%), Positives = 212/311 (68%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPR L++F GQ      L + + AAK R    DHVL  GPPGLGKTTLA +VA EL   
Sbjct: 34  LRPRRLDDFPGQTRVRDQLGLVLRAAKGRGTPPDHVLLSGPPGLGKTTLAMIVASELEQP 93

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGP I  AGDLA++L++L + +VLF+DEIHR+S   EE+LY AMEDF++D+++G+G
Sbjct: 94  IRITSGPAIQHAGDLASVLSSLAEGEVLFLDEIHRMSRAAEEMLYLAMEDFRVDVIIGKG 153

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P A ++ + L  FT++ ATTR GLL  PL+DRFG    L+FY+  DL TI+ R A+L GL
Sbjct: 154 PGATAIPLELPPFTVVGATTRAGLLPAPLRDRFGFTGHLDFYDPSDLVTILHRSARLLGL 213

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
              ++   EI++RSRGTPRIA RLLRRVRD+A+V     +T+  A  AL    +D+ G D
Sbjct: 214 DADEDGIVEISVRSRGTPRIANRLLRRVRDWAQVHGEDRVTQAAARQALELFDVDERGLD 273

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           +LD   L  + R FGGGPVG+ T++  + E  D +E + EP+++++GF+ RTPRGR    
Sbjct: 274 RLDRAVLDALCRRFGGGPVGLSTLAVAVGEEPDTVETVAEPFLVREGFMVRTPRGRAASA 333

Query: 322 IAWQHLGIDIP 332
           +AWQHLG+  P
Sbjct: 334 LAWQHLGLTAP 344


>gi|172035419|ref|YP_001801920.1| Holliday junction DNA helicase RuvB [Cyanothece sp. ATCC 51142]
 gi|226698774|sp|B1WP72|RUVB_CYAA5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|171696873|gb|ACB49854.1| Holliday junction DNA helicase [Cyanothece sp. ATCC 51142]
          Length = 354

 Score =  312 bits (799), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 153/326 (46%), Positives = 221/326 (67%), Gaps = 1/326 (0%)

Query: 4   REGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           +E L      QE  ++   +RP + +E+ GQ +    L + IEAAK R E +DH+L  GP
Sbjct: 16  KERLTKAETHQEQDNLEESIRPHSFDEYIGQKDLKDVLSIVIEAAKTRNEPMDHLLLYGP 75

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTT++ ++A  +GVN + T+ P + +  D+  LL +L+  D+LFIDEIHRL+ + E
Sbjct: 76  PGLGKTTISLILASAMGVNCKITAAPALERPRDITGLLVSLKPGDILFIDEIHRLNRLTE 135

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMED++L++ +G+G +AR+  I L +FTL+ ATT+VG LT+PL+DRFG+  RL F
Sbjct: 136 ELLYPAMEDYRLEITIGKGQAARTRSIPLPKFTLVGATTKVGSLTSPLRDRFGLIQRLKF 195

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           YE E+L  I++R AKL   ++T++ A EI  RSRGTPRIA RLLRRVRD+ +V    +IT
Sbjct: 196 YEPEELALIIKRTAKLLNTSITEQGAAEIGRRSRGTPRIANRLLRRVRDYIQVKKFDSIT 255

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           +E+A  AL    +D  G D  D   L  +   F GGPVG+E ++A   E    IE++ EP
Sbjct: 256 QELAAEALDIYQVDPQGLDWTDRLILDTMITQFNGGPVGLEAVAAATGEDAKTIEEVYEP 315

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLG 328
           Y++Q G++ RTPRGR++  +A+QHLG
Sbjct: 316 YLLQIGYLNRTPRGRVVTTVAYQHLG 341


>gi|239932398|ref|ZP_04689351.1| Holliday junction DNA helicase RuvB [Streptomyces ghanaensis ATCC
           14672]
 gi|291440765|ref|ZP_06580155.1| holliday junction DNA helicase B [Streptomyces ghanaensis ATCC
           14672]
 gi|291343660|gb|EFE70616.1| holliday junction DNA helicase B [Streptomyces ghanaensis ATCC
           14672]
          Length = 356

 Score =  311 bits (798), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 161/329 (48%), Positives = 224/329 (68%), Gaps = 1/329 (0%)

Query: 5   EGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E L+  +   ED  + + LRP+ L+EF GQ +    L + + AA+AR    DHVL  G P
Sbjct: 13  ERLVGASADGEDQAVEAALRPKDLDEFIGQEKVREQLDLVLRAARARGATADHVLLSGAP 72

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTL+ ++A E+G   R TSGP I  AGDLAA+L++L++ +VLF+DEIHR+S   EE
Sbjct: 73  GLGKTTLSMIIAAEMGAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEE 132

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LY AMEDF++D++VG+GP A ++ + L  FTL+ ATTR GLL  PL+DRFG    + FY
Sbjct: 133 MLYMAMEDFRVDVIVGKGPGATAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTAHMEFY 192

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           E  +L+ +V R A L  + +  E A EIA RSRGTPRIA RLLRRVRD+A+V     IT+
Sbjct: 193 EPAELERVVHRSASLLDVEIDTEGAAEIAGRSRGTPRIANRLLRRVRDYAQVKADGLITK 252

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           EIA AAL    +D  G D+LD   L  + + FGGGPVG+ T++  + E R+ +E++ EP+
Sbjct: 253 EIAAAALAVYEVDARGLDRLDRAVLQALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPF 312

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++++G + RTPRGR+  P AW+HLG+  P
Sbjct: 313 LVREGLLARTPRGRVATPAAWEHLGLTPP 341


>gi|297155805|gb|ADI05517.1| Holliday junction DNA helicase RuvB [Streptomyces bingchenggensis
           BCW-1]
          Length = 358

 Score =  311 bits (798), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 157/329 (47%), Positives = 219/329 (66%), Gaps = 1/329 (0%)

Query: 7   LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           L+  +   ED  + + LRP+ L EF GQ      L + ++AA+ R    DHVL  G PGL
Sbjct: 19  LVGADADGEDQAVEAALRPKDLGEFVGQERVREQLDLVLKAARQRGATADHVLLSGAPGL 78

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTL+ ++A E+G   R TSGP I  AGDLAA+L++L + +VLF+DEIHR+S   EE+L
Sbjct: 79  GKTTLSMIIAAEMGAPIRITSGPAIQHAGDLAAILSSLAEGEVLFLDEIHRMSRPAEEML 138

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           Y AMEDF++D++VG+GP A ++ + L  FTL+ ATTR GLL  PL+DRFG    + FY  
Sbjct: 139 YMAMEDFRVDVIVGKGPGATAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTGHMEFYAP 198

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
            +L+ ++ R A L  + +  E A EIA RSRGTPRIA RLLRRVRD+A+V     +TREI
Sbjct: 199 AELERVIHRSAGLLDVVIEAEGAGEIAGRSRGTPRIANRLLRRVRDYAQVKADGVVTREI 258

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           A  AL    +D  G D+LD   LT + + FGGGPVG+ T++  + E R+ +E++ EP+++
Sbjct: 259 AARALAVYDVDGRGLDRLDRAVLTALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPFLV 318

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           ++G + RTPRGR+  P AW HLG+  P +
Sbjct: 319 REGLLARTPRGRIATPAAWTHLGLTPPQQ 347


>gi|194246568|ref|YP_002004207.1| Holliday junction DNA helicase RuvB [Candidatus Phytoplasma mali]
 gi|254767435|sp|B3R0J0|RUVB_PHYMT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|193806925|emb|CAP18354.1| Holliday junction DNA helicase B [Candidatus Phytoplasma mali]
          Length = 332

 Score =  311 bits (798), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 148/304 (48%), Positives = 214/304 (70%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP TL+E+ GQ      L V+I+AAK R E+L+H+L  GPPGLGKTTLA++VA+EL VN
Sbjct: 21  LRPETLKEYMGQKNLKEILSVYIKAAKKRKESLEHLLIYGPPGLGKTTLAKIVAKELNVN 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           F+ TSG  + ++GDL A L++L+  DVLFIDEIHRL   +EEILY AMED+ LD+++G  
Sbjct: 81  FKITSGAAMERSGDLVATLSSLQMGDVLFIDEIHRLPKSIEEILYSAMEDYVLDIVLGTE 140

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
              +S++I+L  FTLI ATTR G +++PL+DRFG+ ++LN+Y  ++L+ I++R + +   
Sbjct: 141 NEKKSIRIDLPPFTLIGATTRFGDISSPLRDRFGLILKLNYYSEDELELIIKRTSLVYNT 200

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + +    ++  RSRGTPRIA RL RR+RDFA+V +   I   I++ AL +L IDK G D
Sbjct: 201 KIDNNTLKKLVKRSRGTPRIANRLFRRIRDFADVYNKGLIDEHISEIALEKLTIDKNGLD 260

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             D  YL  +   F GGPVGI+ I+A + E    IED+ EPY++++G+I+RT RGR+  P
Sbjct: 261 DADYTYLKSLIEKFEGGPVGIKNIAANIGEEVSTIEDIYEPYLLKEGYIKRTKRGRIATP 320

Query: 322 IAWQ 325
           + ++
Sbjct: 321 LTFK 324


>gi|289428307|ref|ZP_06429994.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes J165]
 gi|289158456|gb|EFD06672.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes J165]
          Length = 340

 Score =  311 bits (798), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 156/331 (47%), Positives = 219/331 (66%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M+R  +       E A+ + LRP  L EF GQ      L + + A+K+R    DHVL  G
Sbjct: 1   MERSPVDPSAEPPEKAEEAALRPGALAEFGGQQRVADQLGLVLAASKSRGTTPDHVLLSG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+    R +SGP I  AGDLAA+L++L   +V F+DEIHR+S   
Sbjct: 61  PPGLGKTTLAMIIASEMSAPIRISSGPAIQHAGDLAAILSSLVPGEVFFLDEIHRMSKPA 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMEDF++D++VG+GP A ++ I +  FTL+ ATTR GLL  PL+DRFG   +L+
Sbjct: 121 EEMLYLAMEDFRVDVVVGKGPGATAIPIEIPPFTLVGATTRAGLLPGPLRDRFGFTAQLD 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +YE+ DL+ IV R A + G+ + + AA  IA RSRGTPRIA RLLRRVRD+A+V H   +
Sbjct: 181 YYEVADLERIVTRSAGVIGVELAEGAAHTIASRSRGTPRIANRLLRRVRDWADVHHESPV 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T + A+ AL    +D +G D+LD   L  +   FGGGPVG+ T++  + E    +E++ E
Sbjct: 241 TPQGAETALDLYEVDPLGLDRLDRAVLHAVCLKFGGGPVGLSTLAISVGEEPQTVEEVAE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           P++++ GF+ RTPRGR+    AW+HLG++ P
Sbjct: 301 PFLVRLGFLMRTPRGRVATDRAWRHLGLEPP 331


>gi|254424230|ref|ZP_05037948.1| Holliday junction DNA helicase RuvB [Synechococcus sp. PCC 7335]
 gi|196191719|gb|EDX86683.1| Holliday junction DNA helicase RuvB [Synechococcus sp. PCC 7335]
          Length = 399

 Score =  311 bits (798), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 155/312 (49%), Positives = 213/312 (68%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  + ++ GQ      L + I+AAK+R E LDH+L  GPPGLGKTT+A ++A+E+ V+
Sbjct: 68  IRPGAISDYIGQKALKEVLSIAIQAAKSRQEPLDHLLLYGPPGLGKTTMALILAQEMEVD 127

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + T+ P + +  D+A LL NL+  DVLFIDEIHRLS + EEILYPAMED +LD+ +G+G
Sbjct: 128 CKITTAPALERPRDIAGLLVNLKAGDVLFIDEIHRLSRVTEEILYPAMEDARLDITIGKG 187

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            SAR+  I L  FTL+ ATTRVG L +PL+DRFG+  RL FYE+++L  IV R A +   
Sbjct: 188 QSARTRSIPLQPFTLVGATTRVGALASPLRDRFGLVQRLRFYEVDELTQIVLRTADVLKT 247

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            V  + A EIA R+RGTPRIA RLL+RVRD+ +V     I ++ A  AL    +D  G D
Sbjct: 248 QVLADGAQEIARRARGTPRIANRLLKRVRDYVQVKQLGPINQQTAAEALELFNVDPCGLD 307

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             D R LT++  NF GGPVG++T++A   E    IE++ EPY++Q G++QRTPRGR++  
Sbjct: 308 WTDRRLLTLMIENFNGGPVGLDTMAASTGEDPQTIEEVYEPYLLQIGYLQRTPRGRVVTS 367

Query: 322 IAWQHLGIDIPH 333
            A +HLG  +PH
Sbjct: 368 AACKHLGYQVPH 379


>gi|54025665|ref|YP_119907.1| Holliday junction DNA helicase RuvB [Nocardia farcinica IFM 10152]
 gi|68715295|sp|Q5YTE8|RUVB_NOCFA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|54017173|dbj|BAD58543.1| putative Holliday junction DNA helicase A subunit [Nocardia
           farcinica IFM 10152]
          Length = 357

 Score =  311 bits (798), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 156/326 (47%), Positives = 223/326 (68%), Gaps = 1/326 (0%)

Query: 8   LSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           +S +  + D +I + LRP++L++F GQ      L + +  AK R    DHVL  GPPGLG
Sbjct: 9   VSPSFLKSDGEIEASLRPKSLDDFIGQPRVREQLALVLRGAKQRGSTPDHVLLSGPPGLG 68

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KT++A ++A ELG   R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++   EE+LY
Sbjct: 69  KTSMAMIIAAELGTALRITSGPALERAGDLAAMLSNLVEGDVLFIDEIHRIARPAEEMLY 128

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            AMEDF++D++VG+GP A S+ ++++ FTL+ ATTR G LT PL+DRFG    ++FYE  
Sbjct: 129 LAMEDFRVDVVVGKGPGATSIPLDIAPFTLVGATTRSGALTGPLRDRFGFTGHMDFYEPG 188

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +L  I++R A++ G+ +  +AA EIA RSRGTPRIA RLLRRVRD+AEV     +T  +A
Sbjct: 189 ELLRILERSAQILGVRIETDAAAEIAGRSRGTPRIANRLLRRVRDYAEVRADGIVTLPVA 248

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
            AAL    +D +G D+LD   L  + R F GGPVG+ T++  + E    +E++ EP++++
Sbjct: 249 RAALEVYDVDTLGLDRLDRAVLDALVRGFHGGPVGVSTLAVAVGEEATTVEEVCEPFLVR 308

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIP 332
            G + RTPRGR+    AW+HLG+  P
Sbjct: 309 AGLVARTPRGRVATAAAWEHLGLVPP 334


>gi|295130718|ref|YP_003581381.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes SK137]
 gi|291376754|gb|ADE00609.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes SK137]
          Length = 340

 Score =  311 bits (797), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 154/318 (48%), Positives = 215/318 (67%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E A+ + LRP  L EF GQ      L + + A+K+R    DHVL  GPPGLGKTTLA ++
Sbjct: 14  EKAEEAALRPGALAEFGGQQRVADQLGLVLAASKSRGTTPDHVLLSGPPGLGKTTLAMII 73

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A E+    R +SGP I  AGDLAA+L++L   +V F+DEIHR+S   EE+LY AMEDF++
Sbjct: 74  ASEMSAPIRISSGPAIQHAGDLAAILSSLVPGEVFFLDEIHRMSKPAEEMLYLAMEDFRV 133

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D++VG+GP A ++ I +  FTL+ ATTR GLL  PL+DRFG   +L++YE+ DL+ IV R
Sbjct: 134 DVVVGKGPGATAIPIEIPPFTLVGATTRAGLLPGPLRDRFGFTAQLDYYEVADLERIVTR 193

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A + G+ + + AA  IA RSRGTPRIA RLLRRVRD+A+V H   +T + A+ AL    
Sbjct: 194 SAGVIGVELAEGAANTIASRSRGTPRIANRLLRRVRDWADVHHESPVTPQGAETALDLYE 253

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D +G D+LD   L  +   FGGGPVG+ T++  + E    +E++ EP++++ GF+ RTP
Sbjct: 254 VDPLGLDRLDRAVLHAVCLKFGGGPVGLSTLAISVGEEPQTVEEVAEPFLVRLGFLMRTP 313

Query: 315 RGRLLMPIAWQHLGIDIP 332
           RGR+    AW+HLG++ P
Sbjct: 314 RGRVATDRAWRHLGLEPP 331


>gi|282853887|ref|ZP_06263224.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes J139]
 gi|289425355|ref|ZP_06427132.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes SK187]
 gi|282583340|gb|EFB88720.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes J139]
 gi|289154333|gb|EFD03021.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes SK187]
          Length = 340

 Score =  311 bits (797), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 154/318 (48%), Positives = 215/318 (67%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E A+ + LRP  L EF GQ      L + + A+K+R    DHVL  GPPGLGKTTLA ++
Sbjct: 14  EKAEEAALRPGALAEFGGQQRVADQLGLVLAASKSRGTTPDHVLLSGPPGLGKTTLAMII 73

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A E+    R +SGP I  AGDLAA+L++L   +V F+DEIHR+S   EE+LY AMEDF++
Sbjct: 74  ASEMSAPIRISSGPAIQHAGDLAAILSSLVPGEVFFLDEIHRMSKPAEEMLYLAMEDFRV 133

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D++VG+GP A ++ I +  FTL+ ATTR GLL  PL+DRFG   +L++YE+ DL+ IV R
Sbjct: 134 DVVVGKGPGATAIPIEIPPFTLVGATTRAGLLPGPLRDRFGFTAQLDYYEVADLERIVTR 193

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A + G+ + + AA  IA RSRGTPRIA RLLRRVRD+A+V H   +T + A+ AL    
Sbjct: 194 SAGVIGVELAEGAAHTIASRSRGTPRIANRLLRRVRDWADVHHESPVTPQGAETALDLYE 253

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D +G D+LD   L  +   FGGGPVG+ T++  + E    +E++ EP++++ GF+ RTP
Sbjct: 254 VDPLGLDRLDRAVLHAVCLKFGGGPVGLSTLAISVGEEPQTVEEVAEPFLVRLGFLMRTP 313

Query: 315 RGRLLMPIAWQHLGIDIP 332
           RGR+    AW+HLG++ P
Sbjct: 314 RGRVATDRAWRHLGLEPP 331


>gi|291456790|ref|ZP_06596180.1| holliday junction DNA helicase RuvB [Bifidobacterium breve DSM
           20213]
 gi|291382067|gb|EFE89585.1| holliday junction DNA helicase RuvB [Bifidobacterium breve DSM
           20213]
          Length = 354

 Score =  311 bits (797), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 157/321 (48%), Positives = 216/321 (67%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           S+ +  E      LRP  LE F GQ    + L++F++AA+ R    DH+L  GPPGLGKT
Sbjct: 24  SQPIGNEPVSDEELRPHVLEGFIGQPRLKAQLQLFLDAARKRDVPPDHILLAGPPGLGKT 83

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           TLA +VA EL V  R TSGP +  AGDLA++L++L+  +VLFIDEIHRL    EE+LY A
Sbjct: 84  TLAMIVANELEVPIRVTSGPAVQHAGDLASILSSLDTGEVLFIDEIHRLPRAAEELLYIA 143

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           MEDF++D+MVG+GP A S+ + L RFT+I ATTR G+L +PL+ RFG    L+FY  E+L
Sbjct: 144 MEDFRVDVMVGKGPGASSIPLTLPRFTVIGATTREGMLPSPLRARFGFTAHLDFYPHEEL 203

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           + +++R A + G+ + + +A E+A+RSRGTPRIA RLLRRVRD+A V     +       
Sbjct: 204 EKLIERSASVLGVNLDEGSAHELALRSRGTPRIANRLLRRVRDWAIVHDLIVVHPADVKE 263

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL    ID  G D+LD+  L  I RNF GGPVG+  ++A + E  + +E + EPY++++G
Sbjct: 264 ALALYQIDSEGLDRLDIAVLNAIVRNFNGGPVGLNNLAAMVGEESETVETVCEPYLVREG 323

Query: 309 FIQRTPRGRLLMPIAWQHLGI 329
           F+ RTP+GR+    AWQHLGI
Sbjct: 324 FMVRTPKGRVATEKAWQHLGI 344


>gi|326382128|ref|ZP_08203820.1| Holliday junction DNA helicase RuvB [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326198858|gb|EGD56040.1| Holliday junction DNA helicase RuvB [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 364

 Score =  311 bits (797), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 159/318 (50%), Positives = 216/318 (67%), Gaps = 1/318 (0%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           D D SL RP  L  F GQ      L++ + AA+AR    DH+L  GPPGLGKT+LA ++A
Sbjct: 27  DLDASL-RPSDLGSFIGQPRVREQLELVLHAARARGRTPDHILLSGPPGLGKTSLAMIIA 85

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
            E+G   R TSGP + +AGDLAA+L+NL D DVLFIDEIHR++   EE+LY AMEDF++D
Sbjct: 86  AEMGAAIRITSGPALERAGDLAAMLSNLVDGDVLFIDEIHRIARPAEEMLYLAMEDFRVD 145

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           ++VG+GP A S+ ++++ FTL+ ATTR G LT PL+DRFG    + FYE  +L  +++R 
Sbjct: 146 VVVGKGPGATSIPLDVAPFTLVGATTRSGALTGPLRDRFGFTAHMEFYETGELVRVIKRS 205

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255
           A + G+A+ D+AA E+A RSRGTPRIA RLLRRVRD+AEV     +    A AAL    +
Sbjct: 206 ATILGIAIDDDAASEVAGRSRGTPRIANRLLRRVRDYAEVRGDGRVDLAAARAALAVYDV 265

Query: 256 DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR 315
           D++G D+LD   L  + R FGGGPVG+ T++  + E    +E++ EP++++ G I RTPR
Sbjct: 266 DELGLDRLDRAVLGALVRGFGGGPVGVSTLAVAVGEEPATVEEVCEPFLVRAGMIARTPR 325

Query: 316 GRLLMPIAWQHLGIDIPH 333
           GRL    AW HLG+  P 
Sbjct: 326 GRLATASAWHHLGLTPPE 343


>gi|313807655|gb|EFS46142.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL087PA2]
 gi|313818692|gb|EFS56406.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL046PA2]
 gi|313820462|gb|EFS58176.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL036PA1]
 gi|313822732|gb|EFS60446.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL036PA2]
 gi|313825334|gb|EFS63048.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL063PA1]
 gi|314925071|gb|EFS88902.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL036PA3]
 gi|314960392|gb|EFT04494.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL002PA2]
 gi|314978568|gb|EFT22662.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL072PA2]
 gi|314987986|gb|EFT32077.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL005PA2]
 gi|314989796|gb|EFT33887.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL005PA3]
 gi|315084174|gb|EFT56150.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL027PA2]
 gi|315085517|gb|EFT57493.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL002PA3]
 gi|315088426|gb|EFT60402.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL072PA1]
 gi|327331805|gb|EGE73542.1| holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL096PA3]
 gi|327443582|gb|EGE90236.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL013PA2]
 gi|328753337|gb|EGF66953.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL020PA1]
          Length = 342

 Score =  311 bits (796), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 154/318 (48%), Positives = 215/318 (67%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E A+ + LRP  L EF GQ      L + + A+K+R    DHVL  GPPGLGKTTLA ++
Sbjct: 16  EKAEEAALRPGALAEFGGQQRVADQLGLVLAASKSRGTTPDHVLLSGPPGLGKTTLAMII 75

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A E+    R +SGP I  AGDLAA+L++L   +V F+DEIHR+S   EE+LY AMEDF++
Sbjct: 76  ASEMSAPIRISSGPAIQHAGDLAAILSSLVPGEVFFLDEIHRMSKPAEEMLYLAMEDFRV 135

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D++VG+GP A ++ I +  FTL+ ATTR GLL  PL+DRFG   +L++YE+ DL+ IV R
Sbjct: 136 DVVVGKGPGATAIPIEIPPFTLVGATTRAGLLPGPLRDRFGFTAQLDYYEVADLERIVTR 195

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A + G+ + + AA  IA RSRGTPRIA RLLRRVRD+A+V H   +T + A+ AL    
Sbjct: 196 SAGVIGVELAEGAAHTIASRSRGTPRIANRLLRRVRDWADVHHESPVTPQGAETALDLYE 255

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D +G D+LD   L  +   FGGGPVG+ T++  + E    +E++ EP++++ GF+ RTP
Sbjct: 256 VDPLGLDRLDRAVLHAVCLKFGGGPVGLSTLAISVGEEPQTVEEVAEPFLVRLGFLMRTP 315

Query: 315 RGRLLMPIAWQHLGIDIP 332
           RGR+    AW+HLG++ P
Sbjct: 316 RGRVATDRAWRHLGLEPP 333


>gi|313792006|gb|EFS40107.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL110PA1]
 gi|327453275|gb|EGE99929.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL092PA1]
          Length = 342

 Score =  311 bits (796), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 154/318 (48%), Positives = 215/318 (67%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E A+ + LRP  L EF GQ      L + + A+K+R    DHVL  GPPGLGKTTLA ++
Sbjct: 16  EKAEEAALRPGALAEFGGQQRVADQLGLVLAASKSRGTTPDHVLLSGPPGLGKTTLAMII 75

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A E+    R +SGP I  AGDLAA+L++L   +V F+DEIHR+S   EE+LY AMEDF++
Sbjct: 76  ASEMSAPIRISSGPAIQHAGDLAAILSSLVPGEVFFLDEIHRMSKPAEEMLYLAMEDFRV 135

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D++VG+GP A ++ I +  FTL+ ATTR GLL  PL+DRFG   +L++YE+ DL+ IV R
Sbjct: 136 DVVVGKGPGATAIPIEIPPFTLVGATTRAGLLPGPLRDRFGFTAQLDYYEVADLERIVTR 195

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A + G+ + + AA  IA RSRGTPRIA RLLRRVRD+A+V H   +T + A+ AL    
Sbjct: 196 SAGVIGVELAEGAAHTIASRSRGTPRIANRLLRRVRDWADVHHESPVTPQGAETALDLYE 255

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D +G D+LD   L  +   FGGGPVG+ T++  + E    +E++ EP++++ GF+ RTP
Sbjct: 256 VDPLGLDRLDRAVLHAVCLKFGGGPVGLSTLAISVGEEPQTVEEVAEPFLVRLGFLMRTP 315

Query: 315 RGRLLMPIAWQHLGIDIP 332
           RGR+    AW+HLG++ P
Sbjct: 316 RGRVATDRAWRHLGLEPP 333


>gi|307155176|ref|YP_003890560.1| Holliday junction DNA helicase RuvB [Cyanothece sp. PCC 7822]
 gi|306985404|gb|ADN17285.1| Holliday junction DNA helicase RuvB [Cyanothece sp. PCC 7822]
          Length = 363

 Score =  311 bits (796), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 160/320 (50%), Positives = 220/320 (68%), Gaps = 1/320 (0%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           N   E A+ S+ RPR L ++ GQ +    LK+ IEAAK R EALDH+L  GPPGLGKTT+
Sbjct: 45  NEETERAEDSI-RPRNLNDYIGQKDLKEVLKIAIEAAKVRKEALDHLLLYGPPGLGKTTM 103

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           + ++A E+GVN + T+ P + +  D+  LL NL+  D+LFIDEIHRL+ + EE+LYPAME
Sbjct: 104 SLILASEMGVNCKITAAPALERPRDITGLLINLKPGDILFIDEIHRLNRMSEELLYPAME 163

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           D +LD+ +G+G +A+   I L+ FTLI ATT++G LT+PL+DRFG+  RL FYE ++L  
Sbjct: 164 DHRLDITIGKGQAAKIRSIPLAPFTLIGATTKIGALTSPLRDRFGLIGRLRFYEADELLL 223

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           IV R A +  + +TDEAA  IA RSRGTPRIA RLL+RVRD+ +V   + IT+E+A  AL
Sbjct: 224 IVLRTATILKVQITDEAALVIARRSRGTPRIANRLLKRVRDYVQVKGLEVITQELAAEAL 283

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
            +L +D  G D  D   L+ I   F GGPVG+E ++A   E    IE++ EPY++Q G++
Sbjct: 284 DQLNVDSRGLDWTDRLVLSTIIEQFKGGPVGLEAVAAATGEDAKTIEEVYEPYLLQIGYL 343

Query: 311 QRTPRGRLLMPIAWQHLGID 330
            RT RGR+    A+QHLG +
Sbjct: 344 NRTSRGRIATEAAYQHLGYN 363


>gi|313764320|gb|EFS35684.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL013PA1]
 gi|313802044|gb|EFS43278.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL110PA2]
 gi|313812810|gb|EFS50524.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL025PA1]
 gi|313815858|gb|EFS53572.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL059PA1]
 gi|313827629|gb|EFS65343.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL063PA2]
 gi|313838865|gb|EFS76579.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL086PA1]
 gi|314915310|gb|EFS79141.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL005PA4]
 gi|314918139|gb|EFS81970.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL050PA1]
 gi|314920216|gb|EFS84047.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL050PA3]
 gi|314923583|gb|EFS87414.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL001PA1]
 gi|314931739|gb|EFS95570.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL067PA1]
 gi|314955640|gb|EFT00042.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL027PA1]
 gi|314958036|gb|EFT02139.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL002PA1]
 gi|314962662|gb|EFT06762.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL082PA1]
 gi|314966628|gb|EFT10727.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL082PA2]
 gi|314967472|gb|EFT11571.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL037PA1]
 gi|315077878|gb|EFT49929.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL053PA2]
 gi|315092023|gb|EFT63999.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL110PA4]
 gi|315092850|gb|EFT64826.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL060PA1]
 gi|315098668|gb|EFT70644.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL059PA2]
 gi|315101329|gb|EFT73305.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL046PA1]
 gi|315103630|gb|EFT75606.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL050PA2]
 gi|315108547|gb|EFT80523.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL030PA2]
 gi|327327452|gb|EGE69228.1| holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL103PA1]
 gi|327450648|gb|EGE97302.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL087PA3]
 gi|327454014|gb|EGF00669.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL083PA2]
 gi|328753272|gb|EGF66888.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL025PA2]
 gi|328754066|gb|EGF67682.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL087PA1]
          Length = 342

 Score =  311 bits (796), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 154/318 (48%), Positives = 215/318 (67%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E A+ + LRP  L EF GQ      L + + A+K+R    DHVL  GPPGLGKTTLA ++
Sbjct: 16  EKAEEAALRPGALAEFGGQQRVADQLGLVLAASKSRGTTPDHVLLSGPPGLGKTTLAMII 75

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A E+    R +SGP I  AGDLAA+L++L   +V F+DEIHR+S   EE+LY AMEDF++
Sbjct: 76  ASEMSAPIRISSGPAIQHAGDLAAILSSLVPGEVFFLDEIHRMSKPAEEMLYLAMEDFRV 135

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D++VG+GP A ++ I +  FTL+ ATTR GLL  PL+DRFG   +L++YE+ DL+ IV R
Sbjct: 136 DVVVGKGPGATAIPIEIPPFTLVGATTRAGLLPGPLRDRFGFTAQLDYYEVADLERIVTR 195

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A + G+ + + AA  IA RSRGTPRIA RLLRRVRD+A+V H   +T + A+ AL    
Sbjct: 196 SAGVIGVELAEGAAHTIASRSRGTPRIANRLLRRVRDWADVHHESPVTPQGAETALDLYE 255

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D +G D+LD   L  +   FGGGPVG+ T++  + E    +E++ EP++++ GF+ RTP
Sbjct: 256 VDPLGLDRLDRAVLHAVCLKFGGGPVGLSTLAISVGEEPQTVEEVAEPFLVRLGFLMRTP 315

Query: 315 RGRLLMPIAWQHLGIDIP 332
           RGR+    AW+HLG++ P
Sbjct: 316 RGRVATDRAWRHLGLEPP 333


>gi|37522688|ref|NP_926065.1| Holliday junction DNA helicase RuvB [Gloeobacter violaceus PCC
           7421]
 gi|44888387|sp|Q7NGP9|RUVB_GLOVI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|35213690|dbj|BAC91060.1| holliday junction DNA helicase [Gloeobacter violaceus PCC 7421]
          Length = 376

 Score =  311 bits (796), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 153/322 (47%), Positives = 217/322 (67%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           + ED     LRP+ L ++ GQ +  + L + + AAK+R E+LDH+LF GPPGLGKT+++ 
Sbjct: 38  AHEDQHEESLRPKNLVDYAGQKDLKAVLGIAVAAAKSRGESLDHLLFYGPPGLGKTSISL 97

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++ARE+ V    T+ P + +  D+A LL  L   D+LFIDEIHRL  + EEILYPAMED+
Sbjct: 98  ILAREMNVQIHLTTAPALERPRDIAGLLVKLRRGDILFIDEIHRLPRLTEEILYPAMEDY 157

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           +LD+ +G+G +AR   + L RFTLI ATTRVG L++PL+DRFG+  RL FY++E+L  I+
Sbjct: 158 RLDITIGKGQNARITSVPLPRFTLIGATTRVGALSSPLRDRFGLIQRLRFYDVEELAGII 217

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R A L  +++ +  A EIA R+RGTPRIA RLL+RVRD+A+V     IT  +A AAL  
Sbjct: 218 VRNAALLNISIDEPGAAEIARRARGTPRIANRLLKRVRDYAQVEGDGRITEPVACAALEL 277

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
             +D  G D  D R L  +  ++ GGPVG+E+++A   E    IE++ EPY++Q G++ R
Sbjct: 278 FEVDPRGLDWTDRRLLATLIEHYNGGPVGVESLAAATGEDTQTIEEVYEPYLMQIGYLLR 337

Query: 313 TPRGRLLMPIAWQHLGIDIPHR 334
           T RGR+  P A++HLG   P R
Sbjct: 338 TARGRMASPAAYRHLGYAPPQR 359


>gi|297243470|ref|ZP_06927402.1| Holliday junction resolvasome, helicase subunit [Gardnerella
           vaginalis AMD]
 gi|296888515|gb|EFH27255.1| Holliday junction resolvasome, helicase subunit [Gardnerella
           vaginalis AMD]
          Length = 353

 Score =  311 bits (796), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 156/311 (50%), Positives = 213/311 (68%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP  LE F GQ    + L++F++AAK R  A DH+L  GPPGLGKTTLA +VA EL V 
Sbjct: 36  LRPHALEGFIGQPVLKAQLQLFLDAAKKRDVAPDHMLLAGPPGLGKTTLAMIVANELQVP 95

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGP I  AGDLA++L+ L+  +VLFIDEIHRL    EE+LY AMEDF++D+MVG+G
Sbjct: 96  IRITSGPAIQHAGDLASILSALDAGEVLFIDEIHRLPRAAEELLYIAMEDFRVDVMVGKG 155

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P A S+ + L RFT++ ATTR G+L +PL+ RFG    L+FY  E+L+ +++R AK+ G+
Sbjct: 156 PGASSIPLTLPRFTVVGATTREGMLPSPLRARFGFTAHLDFYPHEELEKLIERSAKVLGI 215

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + D+AA E+++RSRGTPRIA RLLRRVRD+A V     +  E    AL    ID  G D
Sbjct: 216 RLVDQAARELSLRSRGTPRIANRLLRRVRDWAIVHDLSEVNHEDVVEALALYQIDTQGLD 275

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           +LD+  L  +   F GGPVG+  ++A + E  + +E + EPY++++GF+ RTP+GR+   
Sbjct: 276 RLDIAVLKAMVCQFNGGPVGLNNLAAMVGEEAETVETVCEPYLVREGFLIRTPKGRVATS 335

Query: 322 IAWQHLGIDIP 332
            AW+HLG   P
Sbjct: 336 KAWKHLGFKEP 346


>gi|313772297|gb|EFS38263.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL074PA1]
 gi|313810162|gb|EFS47883.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL083PA1]
 gi|313830493|gb|EFS68207.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL007PA1]
 gi|313833529|gb|EFS71243.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL056PA1]
 gi|314973493|gb|EFT17589.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL053PA1]
 gi|314976173|gb|EFT20268.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL045PA1]
 gi|314983805|gb|EFT27897.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL005PA1]
 gi|315080503|gb|EFT52479.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL078PA1]
 gi|315096040|gb|EFT68016.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL038PA1]
 gi|327326320|gb|EGE68110.1| holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL096PA2]
 gi|327445786|gb|EGE92440.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL043PA2]
 gi|327448231|gb|EGE94885.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL043PA1]
 gi|328760718|gb|EGF74284.1| holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL099PA1]
          Length = 342

 Score =  311 bits (796), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 154/318 (48%), Positives = 215/318 (67%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E A+ + LRP  L EF GQ      L + + A+K+R    DHVL  GPPGLGKTTLA ++
Sbjct: 16  EKAEEAALRPGALAEFGGQQRVADQLGLVLAASKSRGTTPDHVLLSGPPGLGKTTLAMII 75

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A E+    R +SGP I  AGDLAA+L++L   +V F+DEIHR+S   EE+LY AMEDF++
Sbjct: 76  ASEMSAPIRISSGPAIQHAGDLAAILSSLVPGEVFFLDEIHRMSKPAEEMLYLAMEDFRV 135

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D++VG+GP A ++ I +  FTL+ ATTR GLL  PL+DRFG   +L++YE+ DL+ IV R
Sbjct: 136 DVVVGKGPGATAIPIEIPPFTLVGATTRAGLLPGPLRDRFGFTAQLDYYEVADLERIVTR 195

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A + G+ + + AA  IA RSRGTPRIA RLLRRVRD+A+V H   +T + A+ AL    
Sbjct: 196 SAGVIGVELAEGAANTIASRSRGTPRIANRLLRRVRDWADVHHESPVTPQGAETALDLYE 255

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D +G D+LD   L  +   FGGGPVG+ T++  + E    +E++ EP++++ GF+ RTP
Sbjct: 256 VDPLGLDRLDRAVLHAVCLKFGGGPVGLSTLAISVGEEPQTVEEVAEPFLVRLGFLMRTP 315

Query: 315 RGRLLMPIAWQHLGIDIP 332
           RGR+    AW+HLG++ P
Sbjct: 316 RGRVATDRAWRHLGLEPP 333


>gi|320011893|gb|ADW06743.1| Holliday junction DNA helicase RuvB [Streptomyces flavogriseus ATCC
           33331]
          Length = 361

 Score =  311 bits (796), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 157/328 (47%), Positives = 219/328 (66%), Gaps = 1/328 (0%)

Query: 7   LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           L+      ED  + + LRP+ L EF GQ +    L + ++AA+AR    DHVL  G PGL
Sbjct: 22  LVDAGADGEDTAVEAALRPKDLHEFVGQEKVREQLDLVLKAARARGATADHVLLSGAPGL 81

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTL+ ++A E+G   R TSGP I  AGDLAA+L++L++ +VLF+DEIHR+S   EE+L
Sbjct: 82  GKTTLSMIIAAEMGAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEML 141

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           Y AMEDF++D++VG+GP A ++ + L  FTL+ ATTR GLL  PL+DRFG    + FY  
Sbjct: 142 YMAMEDFRVDVIVGKGPGATAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTGHMEFYAP 201

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
            +L+ ++ R A L  +A+    A EIA RSRGTPRIA RLLRRVRD+A+V     I R+I
Sbjct: 202 TELERVIHRSAGLLDVAIDTAGAAEIAGRSRGTPRIANRLLRRVRDYAQVKAEGRIDRDI 261

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           A AAL    +D  G D+LD   L  + + FGGGPVG+ T++  + E R+ +E++ EP+++
Sbjct: 262 AAAALRVYEVDARGLDRLDRAVLGALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPFLV 321

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           ++G + RTPRGR+  P AW HLG+  P 
Sbjct: 322 REGLLARTPRGRVATPAAWAHLGLVPPQ 349


>gi|270284161|ref|ZP_05965649.2| holliday junction DNA helicase RuvB [Bifidobacterium gallicum DSM
           20093]
 gi|270277218|gb|EFA23072.1| holliday junction DNA helicase RuvB [Bifidobacterium gallicum DSM
           20093]
          Length = 356

 Score =  311 bits (796), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 160/332 (48%), Positives = 222/332 (66%), Gaps = 5/332 (1%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MM    L +  VS E+     LRP  L  F GQ    + L++F++AA+ R    DH+L  
Sbjct: 19  MMSAAPLGNEPVSDEE-----LRPHVLAGFIGQPTLKAQLQLFLDAARKRDVPPDHILLA 73

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA +VA ELGV  R TSGP I  AGDLA++L++L+  +VLFIDEIHRL   
Sbjct: 74  GPPGLGKTTLAMIVANELGVPIRVTSGPAIQHAGDLASILSSLDAGEVLFIDEIHRLPRA 133

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            EE+LY AMEDF++D+MVG+GP A S+ + L RFT+I ATTR G+L +PL+ RFG    L
Sbjct: 134 AEELLYIAMEDFRVDVMVGKGPGASSIPLTLPRFTVIGATTREGMLPSPLRARFGFTAHL 193

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           +FY  ++L+ +++R A + GL +   A+ ++++RSRGTPRIA RLLRRVRD+A V     
Sbjct: 194 DFYPADELRKLIERSAAVLGLELEQGASQQLSLRSRGTPRIANRLLRRVRDWAIVHDLPQ 253

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +  +    AL    ID  G D+LD+  LT I + F GGPVG+  +SA + E  + +E + 
Sbjct: 254 VRADDVCEALALYQIDTEGLDRLDIAVLTAIVKQFNGGPVGLNNLSAMVGEEAETVETVC 313

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EPY++++GF+ RTP+GR+    AWQHLG+ +P
Sbjct: 314 EPYLVREGFLIRTPKGRVATQKAWQHLGLTMP 345


>gi|224283111|ref|ZP_03646433.1| Holliday junction DNA helicase RuvB [Bifidobacterium bifidum NCIMB
           41171]
 gi|311064394|ref|YP_003971119.1| holliday junction DNA helicase RuvB [Bifidobacterium bifidum
           PRL2010]
 gi|310866713|gb|ADP36082.1| RuvB Holliday junction DNA helicase [Bifidobacterium bifidum
           PRL2010]
          Length = 361

 Score =  311 bits (796), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 153/309 (49%), Positives = 217/309 (70%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP  L+ F GQ    + L++F++AA+ R  A DH+L  GPPGLGKTTLA +VA EL V 
Sbjct: 39  LRPHALDGFVGQPRLKAQLQLFLDAARKRDTAPDHILLAGPPGLGKTTLAMIVANELEVP 98

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGP I  AGDLA++L++L+  +VLFIDEIHRL    EE+LY AMEDF++D+MVG+G
Sbjct: 99  IRITSGPAIQHAGDLASILSSLDAGEVLFIDEIHRLPRAAEELLYIAMEDFRVDVMVGKG 158

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P A S+ + L RFT++ ATTR G+L +PL+ RFG    L+FY  ++L+ +++R + + G+
Sbjct: 159 PGASSIPLTLPRFTVVGATTREGMLPSPLRARFGFTAHLDFYPHDELEKLIERSSGVLGV 218

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
           ++ + AA E+A+RSRGTPRIA RLLRRVRD+A V   + +  +   AAL    ID  G D
Sbjct: 219 SLGEGAAAELALRSRGTPRIANRLLRRVRDWAIVHDLQVVDVDDVRAALALYQIDSEGLD 278

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           +LD+  L  I RNF GGPVG+  ++A + E  + +E + EPY++++GF+ RTP+GR+   
Sbjct: 279 RLDIAVLNAIVRNFNGGPVGLNNLAAMVGEESETVETVCEPYLVREGFLIRTPKGRVATA 338

Query: 322 IAWQHLGID 330
            AW HLG++
Sbjct: 339 KAWSHLGLE 347


>gi|254383612|ref|ZP_04998962.1| holliday junction DNA helicase RuvB [Streptomyces sp. Mg1]
 gi|194342507|gb|EDX23473.1| holliday junction DNA helicase RuvB [Streptomyces sp. Mg1]
          Length = 353

 Score =  311 bits (796), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 152/308 (49%), Positives = 212/308 (68%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L EF GQ +    L + ++AA+ R    DHVL  G PGLGKTTL+ ++A E+G  
Sbjct: 27  LRPKDLGEFVGQEKVRQQLDLVLKAARQRGATADHVLLSGAPGLGKTTLSMIIAAEMGAP 86

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGP I  AGDLAA+L++L++ +VLF+DEIHR+S   EE+LY AMEDF++D++VG+G
Sbjct: 87  IRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDVIVGKG 146

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P A ++ + L  FTL+ ATTR GLL  PL+DRFG    + FY  E+L+ ++ R A+L  +
Sbjct: 147 PGATAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTGHMEFYAPEELERVIHRSARLLDV 206

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +    A EIA RSRGTPRIA RLLRRVRD+A+V     ITRE+A  AL    +D  G D
Sbjct: 207 EIDTAGAAEIAGRSRGTPRIANRLLRRVRDYAQVKADGVITREVAGTALQVYEVDARGLD 266

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           +LD   L  + + FGGGPVG+ T++  + E R+ +E++ EP+++++G + RTPRGR+  P
Sbjct: 267 RLDRAVLEALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPFLVREGLLARTPRGRVATP 326

Query: 322 IAWQHLGI 329
            AW HLG+
Sbjct: 327 AAWVHLGL 334


>gi|294790878|ref|ZP_06756036.1| holliday junction DNA helicase RuvB [Scardovia inopinata F0304]
 gi|294458775|gb|EFG27128.1| holliday junction DNA helicase RuvB [Scardovia inopinata F0304]
          Length = 367

 Score =  310 bits (795), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 158/318 (49%), Positives = 218/318 (68%), Gaps = 4/318 (1%)

Query: 16  DADISL----LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           DAD S+    LRP TLE F GQ +  + L +F+ AA+ R    DH+L  GPPGLGKTTLA
Sbjct: 38  DADDSISDEELRPSTLETFIGQPQLKAQLGLFLNAARKRQVPPDHILLAGPPGLGKTTLA 97

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            +VA EL V  R TSGP I  AGDLA++L++L++ +VLFIDEIHRL    EE+LY AMED
Sbjct: 98  MIVAHELDVPIRVTSGPAIQHAGDLASILSSLDEGEVLFIDEIHRLPRAAEELLYIAMED 157

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F++D+MVG+GP A S+ + L RFT++ ATTR G+L +PL+ RFG    L++Y   +L+ +
Sbjct: 158 FRVDVMVGKGPGASSIPLTLPRFTVVGATTREGMLPSPLRARFGFTAHLDYYPTSELERL 217

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           ++R + +  L V D+AA E+A+RSRGTPR+A RLLRRVRD+  V    TI  +    AL 
Sbjct: 218 IKRSSSVLDLTVDDQAAHELAVRSRGTPRVANRLLRRVRDWGIVHDLPTIDADSVIDALE 277

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
              IDK G D+LD+  LT + + F GGPVG+  ++A + E  + +E + EPY++++GF+ 
Sbjct: 278 LYQIDKEGLDRLDIAVLTALCKQFHGGPVGLNNLAAMVGEEAETVETVCEPYLVREGFLI 337

Query: 312 RTPRGRLLMPIAWQHLGI 329
           RTPRGR     AW+HLG+
Sbjct: 338 RTPRGRAATERAWRHLGL 355


>gi|313140260|ref|ZP_07802453.1| holliday junction ATP-dependent DNA helicase ruvB [Bifidobacterium
           bifidum NCIMB 41171]
 gi|313132770|gb|EFR50387.1| holliday junction ATP-dependent DNA helicase ruvB [Bifidobacterium
           bifidum NCIMB 41171]
          Length = 355

 Score =  310 bits (795), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 153/309 (49%), Positives = 217/309 (70%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP  L+ F GQ    + L++F++AA+ R  A DH+L  GPPGLGKTTLA +VA EL V 
Sbjct: 33  LRPHALDGFVGQPRLKAQLQLFLDAARKRDTAPDHILLAGPPGLGKTTLAMIVANELEVP 92

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGP I  AGDLA++L++L+  +VLFIDEIHRL    EE+LY AMEDF++D+MVG+G
Sbjct: 93  IRITSGPAIQHAGDLASILSSLDAGEVLFIDEIHRLPRAAEELLYIAMEDFRVDVMVGKG 152

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P A S+ + L RFT++ ATTR G+L +PL+ RFG    L+FY  ++L+ +++R + + G+
Sbjct: 153 PGASSIPLTLPRFTVVGATTREGMLPSPLRARFGFTAHLDFYPHDELEKLIERSSGVLGV 212

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
           ++ + AA E+A+RSRGTPRIA RLLRRVRD+A V   + +  +   AAL    ID  G D
Sbjct: 213 SLGEGAAAELALRSRGTPRIANRLLRRVRDWAIVHDLQVVDVDDVRAALALYQIDSEGLD 272

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           +LD+  L  I RNF GGPVG+  ++A + E  + +E + EPY++++GF+ RTP+GR+   
Sbjct: 273 RLDIAVLNAIVRNFNGGPVGLNNLAAMVGEESETVETVCEPYLVREGFLIRTPKGRVATA 332

Query: 322 IAWQHLGID 330
            AW HLG++
Sbjct: 333 KAWSHLGLE 341


>gi|332675563|gb|AEE72379.1| holliday junction ATP-dependent DNA helicase RuvB
           [Propionibacterium acnes 266]
          Length = 342

 Score =  310 bits (795), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 154/318 (48%), Positives = 215/318 (67%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E A+ + LRP  L EF GQ      L + + A+K+R    DHVL  GPPGLGKTTLA ++
Sbjct: 16  EKAEEAALRPGALAEFGGQQRVADQLGLVLAASKSRGTTPDHVLLSGPPGLGKTTLAMII 75

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A E+    R +SGP I  AGDLAA+L++L   +V F+DEIHR+S   EE+LY AMEDF++
Sbjct: 76  ASEMSAPIRISSGPAIQHAGDLAAILSSLVPGEVFFLDEIHRVSKPAEEMLYLAMEDFRV 135

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D++VG+GP A ++ I +  FTL+ ATTR GLL  PL+DRFG   +L++YE+ DL+ IV R
Sbjct: 136 DVVVGKGPGATAIPIEIPPFTLVGATTRAGLLPGPLRDRFGFTAQLDYYEVADLERIVTR 195

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A + G+ + + AA  IA RSRGTPRIA RLLRRVRD+A+V H   +T + A+ AL    
Sbjct: 196 SAGVIGVELAEGAAHTIASRSRGTPRIANRLLRRVRDWADVHHESPVTPQGAETALDLYE 255

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D +G D+LD   L  +   FGGGPVG+ T++  + E    +E++ EP++++ GF+ RTP
Sbjct: 256 VDPLGLDRLDRAVLHAVCLKFGGGPVGLSTLAISVGEEPQTVEEVAEPFLVRLGFLMRTP 315

Query: 315 RGRLLMPIAWQHLGIDIP 332
           RGR+    AW+HLG++ P
Sbjct: 316 RGRVATDRAWRHLGLEPP 333


>gi|328881166|emb|CCA54405.1| Holliday junction DNA helicase RuvB [Streptomyces venezuelae ATCC
           10712]
          Length = 366

 Score =  310 bits (795), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 152/312 (48%), Positives = 213/312 (68%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L EF GQ +    L + ++AA+ R    DHVL  G PGLGKTTL+ ++A E+   
Sbjct: 34  LRPKDLSEFVGQEKVRQQLDLVLKAARQRGATADHVLLSGAPGLGKTTLSMIIAAEMNAP 93

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGP I  AGDLAA+L++L++ ++LF+DEIHR+S   EE+LY AMEDF++D++VG+G
Sbjct: 94  IRITSGPAIQHAGDLAAILSSLQEGEILFLDEIHRMSRPAEEMLYMAMEDFRVDVIVGKG 153

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P A ++ + L  FTL+ ATTR GLL  PL+DRFG    + FY+  +L+ ++ R A L  +
Sbjct: 154 PGATAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTGHMEFYDPAELQRVIHRSAGLLDV 213

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +    A EIA RSRGTPRIA RLLRRVRD+A+V     ITREIA+AAL    +D  G D
Sbjct: 214 EIDPAGAAEIAGRSRGTPRIANRLLRRVRDYAQVRADGVITREIAEAALSVYEVDGRGLD 273

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           +LD   L  + + FGGGPVG+ T++  + E R+ +E++ EP+++++G + RTPRGR+  P
Sbjct: 274 RLDRAVLEALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPFLVREGLLARTPRGRVATP 333

Query: 322 IAWQHLGIDIPH 333
            AW HLG+  P 
Sbjct: 334 AAWAHLGLVPPQ 345


>gi|254430332|ref|ZP_05044035.1| Holliday junction DNA helicase RuvB [Cyanobium sp. PCC 7001]
 gi|197624785|gb|EDY37344.1| Holliday junction DNA helicase RuvB [Cyanobium sp. PCC 7001]
          Length = 361

 Score =  310 bits (795), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 160/306 (52%), Positives = 210/306 (68%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPR L ++ GQ E    L + IEA +AR EALDHVL  GPPGLGKTT+A V+A ELGV 
Sbjct: 49  LRPRRLADYIGQGELKQVLGIAIEATRARGEALDHVLLYGPPGLGKTTMALVLAEELGVR 108

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TS P + +  D+  LL NL+ RD+LFIDEIHRL+ + EE+LYPAMED +LDL VG+G
Sbjct: 109 CRITSAPALERPRDIVGLLVNLQPRDLLFIDEIHRLNRVAEELLYPAMEDGRLDLTVGQG 168

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            +AR+  + L  FTL+ ATTR G L++PL+DRFG+  RL FY ++DL+ IV R A L  L
Sbjct: 169 TTARTRSLPLPPFTLVGATTRAGSLSSPLRDRFGLIQRLEFYGLDDLQAIVLRAAGLLAL 228

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  +AA E+A R RGTPRIA RLLRRVRD A V+    ++  +   AL    +D  G D
Sbjct: 229 ELEADAALEVARRCRGTPRIANRLLRRVRDVAAVSGHSRVSAAVVRQALSLHRVDARGLD 288

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             D R L+++   +GGGPVG++T++AGL E    +E ++EPY++QQG +QRTPRGR+L  
Sbjct: 289 AHDRRLLSLMLEAYGGGPVGLDTLAAGLGEDPATLETVVEPYLLQQGLLQRTPRGRVLTE 348

Query: 322 IAWQHL 327
               HL
Sbjct: 349 AGRAHL 354


>gi|50842640|ref|YP_055867.1| Holliday junction DNA helicase B [Propionibacterium acnes
           KPA171202]
 gi|68715438|sp|Q6A8K7|RUVB_PROAC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|50840242|gb|AAT82909.1| holliday junction DNA helicase RuvB [Propionibacterium acnes
           KPA171202]
 gi|315105679|gb|EFT77655.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL030PA1]
          Length = 342

 Score =  310 bits (795), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 154/318 (48%), Positives = 215/318 (67%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E A+ + LRP  L EF GQ      L + + A+K+R    DHVL  GPPGLGKTTLA ++
Sbjct: 16  EKAEEAALRPGALAEFGGQQRVADQLGLVLAASKSRGTTPDHVLLSGPPGLGKTTLAMII 75

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A E+    R +SGP I  AGDLAA+L++L   +V F+DEIHR+S   EE+LY AMEDF++
Sbjct: 76  ASEMSAPIRISSGPAIQHAGDLAAILSSLVPGEVFFLDEIHRMSKPAEEMLYLAMEDFRV 135

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D++VG+GP A ++ I +  FTL+ ATTR GLL  PL+DRFG   +L++YE+ DL+ IV R
Sbjct: 136 DVVVGKGPGATAIPIEIPPFTLVGATTRAGLLPGPLRDRFGFTAQLDYYEVADLERIVTR 195

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A + G+ + + AA  IA RSRGTPRIA RLLRRVRD+A+V H   +T + A+ AL    
Sbjct: 196 SAGVIGVELAEGAAHTIASRSRGTPRIANRLLRRVRDWADVHHESPVTPQGAETALDLYE 255

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D +G D+LD   L  +   FGGGPVG+ T++  + E    +E++ EP++++ GF+ RTP
Sbjct: 256 VDPLGLDRLDRAVLHAVCLKFGGGPVGLSTLAISVGEEPQTVEEVAEPFLVRLGFLMRTP 315

Query: 315 RGRLLMPIAWQHLGIDIP 332
           RGR+    AW+HLG++ P
Sbjct: 316 RGRVPTDRAWRHLGLEPP 333


>gi|271967389|ref|YP_003341585.1| Holliday junction DNA helicase B [Streptosporangium roseum DSM
           43021]
 gi|270510564|gb|ACZ88842.1| Holliday junction DNA helicase B [Streptosporangium roseum DSM
           43021]
          Length = 352

 Score =  310 bits (795), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 154/311 (49%), Positives = 214/311 (68%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ LEEF GQ      L + +++A  R    DHVL  G PGLGKTTL+ ++A EL V 
Sbjct: 23  LRPKRLEEFIGQARVREQLSLVLQSALRRNRPPDHVLMSGGPGLGKTTLSMIIATELSVP 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGP + +AGDLAA+L+ L + +VLFIDEIHR++   EE+LY AMEDF++D++VG+G
Sbjct: 83  LRITSGPALERAGDLAAILSTLSEGEVLFIDEIHRMARPAEEMLYLAMEDFRVDIVVGKG 142

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P A ++ + ++ FTL+ ATTR GLL  PL+DRFG    + FY++ +L+ ++ R ++L GL
Sbjct: 143 PGATAIPLEVAPFTLVGATTRAGLLPAPLRDRFGFVAHMEFYDVAELEQVLHRSSRLLGL 202

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  +AA EIA RSRGTPRIA RLLRRVRDFAEV     +TR++A AAL    +D  G D
Sbjct: 203 QLPGDAAHEIAGRSRGTPRIANRLLRRVRDFAEVRADGVVTRDVASAALNLYEVDAEGLD 262

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           +LD   L  + R FGGGPVG+ T++  + E  + +E + EP++++QG + RTPRGR+   
Sbjct: 263 RLDRAVLGALLRKFGGGPVGLSTLAVAVGEEPETVEVVAEPFLVRQGLLARTPRGRVATA 322

Query: 322 IAWQHLGIDIP 332
            AW HLG+  P
Sbjct: 323 AAWVHLGLTPP 333


>gi|159904281|ref|YP_001551625.1| Holliday junction DNA helicase RuvB [Prochlorococcus marinus str.
           MIT 9211]
 gi|159889457|gb|ABX09671.1| Holliday junction DNA helicase RuvB [Prochlorococcus marinus str.
           MIT 9211]
          Length = 348

 Score =  310 bits (795), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 155/307 (50%), Positives = 218/307 (71%), Gaps = 2/307 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+TL EF GQ E    L + ++AA  R EALDHVL  GPPGLGKTT+A V+A+ELGV 
Sbjct: 40  LRPKTLNEFVGQSELKEVLAISVKAALYRKEALDHVLLYGPPGLGKTTMALVLAQELGVK 99

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TS P + +  D+  LL +L  +++LF+DEIHRL+   EE+LYPA+EDF+LDL +G+G
Sbjct: 100 CRITSAPALERPRDIVGLLMDLRSKELLFVDEIHRLTNSAEELLYPALEDFRLDLTIGKG 159

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            ++++  I L RFTL+ ATTR   +++PL+DRFGI  R  FY ++DL+ IV+R A+   L
Sbjct: 160 TTSKTRAIELPRFTLVGATTRPAAISSPLRDRFGITQRFGFYNLKDLQEIVKRSARFLEL 219

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV-AHAKTITREIADAALLRLAIDKMGF 260
           ++ D+A+ EIA R RGTPRIA RLLRRVRDFA V  + K I  ++ D +L    +D+ G 
Sbjct: 220 SMIDDASLEIARRCRGTPRIANRLLRRVRDFATVKCNKKLIDIDLVDESLKLHCVDERGL 279

Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320
           DQ D R L+++A + GGGPVG++T++A L E    +E ++EP+++Q GF+QRTPRGR+L 
Sbjct: 280 DQFDRRLLSLLA-SHGGGPVGLDTLAAALGEEPATLESVVEPFLLQIGFLQRTPRGRILT 338

Query: 321 PIAWQHL 327
               +H+
Sbjct: 339 LQGQEHI 345


>gi|84496344|ref|ZP_00995198.1| Holliday junction DNA helicase RuvB [Janibacter sp. HTCC2649]
 gi|84383112|gb|EAP98993.1| Holliday junction DNA helicase RuvB [Janibacter sp. HTCC2649]
          Length = 392

 Score =  310 bits (795), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 157/311 (50%), Positives = 211/311 (67%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L EF GQ      L + +EAA+ R    DH+L  GPPGLGKTTLA +VA EL   
Sbjct: 62  LRPKRLSEFPGQTRVRDQLGLVLEAARRRGSVPDHILLSGPPGLGKTTLALIVAAELERP 121

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGP I  AGDLAA+L++L++ +VLF+DEIHR+S   EE+LY AMEDF++D++VG+G
Sbjct: 122 IRITSGPAIQHAGDLAAVLSSLDEGEVLFLDEIHRMSRAAEEMLYLAMEDFRVDVIVGKG 181

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P A ++ + LS FT++ ATTR GLL  PL+DRFG    L++Y+  DL TI++R A L G+
Sbjct: 182 PGATAIPLELSPFTVVGATTRSGLLPAPLRDRFGFTGHLDYYDASDLTTILRRSAGLLGV 241

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
              +    EIA RSRGTPRIA RLLRRVRD+A+V  +  +  + A AAL    +D  G D
Sbjct: 242 DANEAGITEIAGRSRGTPRIANRLLRRVRDWAQVHGSGHVDLDAAHAALRLFDVDDAGLD 301

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           +LD   L  + R FGGGPVG+ T++  + E  D +E + EPY++++GF+ RTPRGR    
Sbjct: 302 RLDRAVLDALCRRFGGGPVGLSTLAIAVGEESDTVETVAEPYLVREGFMVRTPRGRAASG 361

Query: 322 IAWQHLGIDIP 332
            AW+HLG+  P
Sbjct: 362 KAWRHLGLTPP 372


>gi|310287479|ref|YP_003938737.1| Holliday junction DNA helicase RuvB [Bifidobacterium bifidum S17]
 gi|309251415|gb|ADO53163.1| Holliday junction DNA helicase RuvB [Bifidobacterium bifidum S17]
          Length = 361

 Score =  310 bits (795), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 153/309 (49%), Positives = 217/309 (70%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP  L+ F GQ    + L++F++AA+ R  A DH+L  GPPGLGKTTLA +VA EL V 
Sbjct: 39  LRPHALDGFVGQPRLKAQLQLFLDAARKRDTAPDHILLAGPPGLGKTTLAMIVANELEVP 98

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGP I  AGDLA++L++L+  +VLFIDEIHRL    EE+LY AMEDF++D+MVG+G
Sbjct: 99  IRITSGPAIQHAGDLASILSSLDAGEVLFIDEIHRLPRAAEELLYIAMEDFRVDVMVGKG 158

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P A S+ + L RFT++ ATTR G+L +PL+ RFG    L+FY  ++L+ +++R + + G+
Sbjct: 159 PGASSIPLTLPRFTVVGATTREGMLPSPLRARFGFTAHLDFYPHDELEKLIERSSGVLGV 218

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
           ++ + AA E+A+RSRGTPRIA RLLRRVRD+A V   + +  +   AAL    ID  G D
Sbjct: 219 SLGEGAAAELALRSRGTPRIANRLLRRVRDWAIVHDLQVVDVDDVRAALALYQIDSEGLD 278

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           +LD+  L  I RNF GGPVG+  ++A + E  + +E + EPY++++GF+ RTP+GR+   
Sbjct: 279 RLDIAVLNAIVRNFNGGPVGLNNLAAMVGEESETVETVCEPYLVREGFLIRTPKGRVATA 338

Query: 322 IAWQHLGID 330
            AW HLG++
Sbjct: 339 KAWSHLGLE 347


>gi|297198357|ref|ZP_06915754.1| Holliday junction DNA helicase RuvB [Streptomyces sviceus ATCC
           29083]
 gi|197714414|gb|EDY58448.1| Holliday junction DNA helicase RuvB [Streptomyces sviceus ATCC
           29083]
          Length = 356

 Score =  310 bits (795), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 160/329 (48%), Positives = 224/329 (68%), Gaps = 1/329 (0%)

Query: 5   EGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E L+  +  +ED  + + LRP+ L+EF GQ +    L + + AA+AR    DHVL  G P
Sbjct: 13  ERLVGASADREDQAVEAALRPKDLDEFIGQEKVREQLDLVLRAARARGATADHVLLSGAP 72

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTL+ ++A E+G   R TSGP I  AGDLAA+L++L++ +VLF+DEIHR+S   EE
Sbjct: 73  GLGKTTLSMIIAAEMGAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEE 132

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LY AMEDF++D++VG+GP A ++ + L  FTL+ ATTR GLL  PL+DRFG    + FY
Sbjct: 133 MLYMAMEDFRVDVIVGKGPGATAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTAHMEFY 192

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           E  +L+ ++ R A L  + +  E A EIA RSRGTPRIA RLLRRVRD+A+V     ITR
Sbjct: 193 EPAELERVIHRSAHLLDVEIGSEGAAEIAGRSRGTPRIANRLLRRVRDYAQVKADGIITR 252

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           +IA AAL    +D  G D+LD   L  + + FGGGPVG+ T++  + E R+ +E++ EP+
Sbjct: 253 DIAAAALKVYEVDARGLDRLDRGVLEALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPF 312

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++++G + RTPRGR+  P AW HLG+  P
Sbjct: 313 LVREGLLARTPRGRVATPAAWAHLGLTPP 341


>gi|116620085|ref|YP_822241.1| Holliday junction DNA helicase RuvB [Candidatus Solibacter usitatus
           Ellin6076]
 gi|122255536|sp|Q02AG6|RUVB_SOLUE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|116223247|gb|ABJ81956.1| Holliday junction DNA helicase subunit RuvB [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 344

 Score =  310 bits (794), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 167/330 (50%), Positives = 227/330 (68%), Gaps = 2/330 (0%)

Query: 1   MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M DRE L+S +   EDA   + LRPR L +FTGQ +   NL + IEAA+ R EA+DHVL 
Sbjct: 1   MPDRE-LISGDRQAEDAQFEVGLRPRRLADFTGQSKLKENLSIAIEAARMRGEAMDHVLL 59

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A EL V F  TSGPV+ K  DL  +L+N+    V FIDEIHRL  
Sbjct: 60  YGPPGLGKTTLASIIAEELQVQFTPTSGPVLQKKLDLTGILSNIRLHQVFFIDEIHRLLP 119

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEE+LY A+EDF++D++VG GP AR+  + + +FT I ATTR GL++ PL+ RFG+ +R
Sbjct: 120 DVEEMLYSALEDFRVDILVGVGPGARTHSLPMPKFTAIGATTRQGLVSAPLRGRFGLVLR 179

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L+ Y  E+LK IV+R A+L  + + D AA EIA R RGTPRIA RLLRRVRD+A+V    
Sbjct: 180 LDPYNTEELKAIVKRSARLLTVEIEDGAAEEIARRCRGTPRIANRLLRRVRDYAQVRADG 239

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I +++A  AL  L +D+ G D++D + +  I   + GGPVG+ TI+A +SE  + IE++
Sbjct: 240 RINQKVAQTALNLLDVDRYGLDEIDQKIMMTILEKYRGGPVGVNTIAASISEESETIEEV 299

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
            EPY+IQ GF+ RTPRGR+   +A+ +  +
Sbjct: 300 YEPYLIQLGFLNRTPRGRVATELAYDYFKV 329


>gi|46446742|ref|YP_008107.1| Holliday junction DNA helicase B [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|67472424|sp|Q6MC67|RUVB_PARUW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|46400383|emb|CAF23832.1| probable holliday junction DNA helicase, ruvB [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 332

 Score =  310 bits (794), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 154/324 (47%), Positives = 219/324 (67%), Gaps = 1/324 (0%)

Query: 5   EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           +  +  N+++++    + LRP+ L +F GQ      L+V I AA+ R E L H LF GPP
Sbjct: 3   KNFIESNLNKQELSFEVPLRPQCLTDFVGQDSIRDRLEVHIGAARQRGEVLGHCLFSGPP 62

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++++ +  N   TSGPVI KAGDLA +LT+L+  DVLFIDEIHRL+  VEE
Sbjct: 63  GLGKTTLASILSKAMESNLVLTSGPVIEKAGDLAGILTSLKTGDVLFIDEIHRLNRSVEE 122

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
            LY AMEDF LDLM+  GP+ARS+++ L++FTL  ATTR+GLL+ PL+ RF    RL +Y
Sbjct: 123 YLYQAMEDFALDLMIDSGPNARSIQVKLNQFTLAGATTRLGLLSEPLRSRFAFTCRLEYY 182

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           +   L+ I+ R +++  + +  EAA EIA RSRGTPR+A  LLR VRDFA++     I  
Sbjct: 183 DPMILQKILLRTSRILNVKIDSEAALEIAKRSRGTPRVANHLLRWVRDFAQIKANNYIDL 242

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
            +A+ AL  L+ID+ G D++D + L  +  ++ GGPVGI  I+A + E    +E++ EPY
Sbjct: 243 SVANRALTMLSIDEKGLDEMDKKMLQTMIDHYSGGPVGINAIAASIGEEPSTVEEVYEPY 302

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHL 327
           +I QG ++RTPRGR +  + +QH+
Sbjct: 303 LILQGLLKRTPRGREVTSLGYQHI 326


>gi|308271855|emb|CBX28463.1| Holliday junction ATP-dependent DNA helicase ruvB [uncultured
           Desulfobacterium sp.]
          Length = 352

 Score =  310 bits (794), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 153/312 (49%), Positives = 207/312 (66%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           + +I  LRP ++ ++ GQ E    LK+ I+AAK R E +DHVL  GPPGLGKTTLA ++A
Sbjct: 33  EPEILSLRPESMSDYIGQKEVVETLKIAIQAAKQRGEPIDHVLLHGPPGLGKTTLAHIIA 92

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
            E G N   TSGP + K GDL  +LT+LE+ D+LFIDEIHR+  +VEE +YPAMEDF +D
Sbjct: 93  NETGANLTVTSGPALEKGGDLVGILTHLEEGDILFIDEIHRIPKVVEEFMYPAMEDFAID 152

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
            +  +G +ARS K  L  F L+ ATTRVGLL++PL+DRFGI   L+FY   DL  IV R 
Sbjct: 153 FVFDKGVNARSHKYRLKHFVLVGATTRVGLLSSPLRDRFGIFRTLDFYTESDLMIIVSRS 212

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255
           A L  + + ++AA E++ RSRGTPRI  RLL+RVRD+A+V     IT++    AL    +
Sbjct: 213 ADLLKIKIEEDAAYELSRRSRGTPRIVNRLLKRVRDYAQVRGDGIITKKTVQEALALEGV 272

Query: 256 DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR 315
           D+ G   LD RYL  +   + GGPVG+E I+A L E  D + D++EP++++ G I RT  
Sbjct: 273 DEKGLTNLDCRYLKTVIEFYNGGPVGVEAIAATLQEESDTLVDVVEPFLLKIGLIMRTSS 332

Query: 316 GRLLMPIAWQHL 327
           GR     A++HL
Sbjct: 333 GRKASEEAYKHL 344


>gi|312132690|ref|YP_004000029.1| ruvb [Bifidobacterium longum subsp. longum BBMN68]
 gi|317483239|ref|ZP_07942234.1| Holliday junction DNA helicase RuvB [Bifidobacterium sp.
           12_1_47BFAA]
 gi|322689207|ref|YP_004208941.1| holliday junction DNA helicase RuvB [Bifidobacterium longum subsp.
           infantis 157F]
 gi|322691273|ref|YP_004220843.1| holliday junction DNA helicase RuvB [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|291516875|emb|CBK70491.1| Holliday junction DNA helicase subunit RuvB [Bifidobacterium longum
           subsp. longum F8]
 gi|311773648|gb|ADQ03136.1| RuvB [Bifidobacterium longum subsp. longum BBMN68]
 gi|316915308|gb|EFV36735.1| Holliday junction DNA helicase RuvB [Bifidobacterium sp.
           12_1_47BFAA]
 gi|320456129|dbj|BAJ66751.1| holliday junction DNA helicase RuvB [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320460543|dbj|BAJ71163.1| holliday junction DNA helicase RuvB [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 354

 Score =  310 bits (793), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 157/321 (48%), Positives = 216/321 (67%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           S+ +  E      LRP  LE F GQ    + L++F++AA+ R    DH+L  GPPGLGKT
Sbjct: 24  SQPIGNEPVSDEELRPHVLEGFIGQPRLKAQLQLFLDAARKRDVPPDHILLAGPPGLGKT 83

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           TLA +VA EL V  R TSGP +  AGDLA++L++L+  +VLFIDEIHRL    EE+LY A
Sbjct: 84  TLAMIVANELEVPIRVTSGPAVQHAGDLASILSSLDVGEVLFIDEIHRLPRAAEELLYIA 143

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           MEDF++D+MVG+GP A S+ + L RFT+I ATTR G+L +PL+ RFG    L+FY  E+L
Sbjct: 144 MEDFRVDVMVGKGPGASSIPLTLPRFTVIGATTREGMLPSPLRARFGFTAHLDFYPHEEL 203

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           + +++R A + G+ +   +A E+A+RSRGTPRIA RLLRRVRD+A V     +  +    
Sbjct: 204 EKLIERSANVLGVNLDAGSAHELALRSRGTPRIANRLLRRVRDWAIVHDLIVVRPDDVKE 263

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL    ID  G D+LD+  L  I RNF GGPVG+  ++A + E  + +E + EPY++++G
Sbjct: 264 ALALYQIDSEGLDRLDIAVLNAIVRNFNGGPVGLNNLAAMVGEESETVETVCEPYLVREG 323

Query: 309 FIQRTPRGRLLMPIAWQHLGI 329
           F+ RTP+GR+    AWQHLGI
Sbjct: 324 FMIRTPKGRVATEKAWQHLGI 344


>gi|313837772|gb|EFS75486.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL037PA2]
 gi|314927346|gb|EFS91177.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL044PA1]
 gi|314972424|gb|EFT16521.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL037PA3]
          Length = 342

 Score =  310 bits (793), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 154/318 (48%), Positives = 214/318 (67%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E A+ + LRP  L EF GQ      L + + A+K+R  A DHVL  GPPGLGKTTLA ++
Sbjct: 16  EKAEEAALRPGALAEFGGQQRVADQLGLVLAASKSRGTAPDHVLLSGPPGLGKTTLAMII 75

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A E+    R +SGP I  AGDLAA+L++L   +V F+DEIHR+S   EE+LY AMEDF++
Sbjct: 76  ASEMSAPIRISSGPAIQHAGDLAAILSSLVPGEVFFLDEIHRMSKPAEEMLYLAMEDFRV 135

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D++VG+GP A ++ I++  FTL+ ATTR GLL  PL+DRFG   +L++YE+ DL+ IV R
Sbjct: 136 DVVVGKGPGATAIPIDIPPFTLVGATTRAGLLPGPLRDRFGFTAQLDYYEVADLERIVTR 195

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A + G+ + D  A  IA RSRGTPRIA RLLRRVRD+A+V     +T   A  AL    
Sbjct: 196 SAGVIGVELADGTAHTIASRSRGTPRIANRLLRRVRDWADVNRESPVTPHGAQTALDLYE 255

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D +G D+LD   L+ +   FGGGPVG+ T++  + E    +E++ EP++++ GF+ RTP
Sbjct: 256 VDPLGLDRLDRAVLSAVCLKFGGGPVGLSTLAISVGEEPQTVEEVAEPFLVRLGFLMRTP 315

Query: 315 RGRLLMPIAWQHLGIDIP 332
           RGR+    AW+HLG++ P
Sbjct: 316 RGRVATDRAWRHLGLEPP 333


>gi|296454194|ref|YP_003661337.1| Holliday junction DNA helicase RuvB [Bifidobacterium longum subsp.
           longum JDM301]
 gi|296183625|gb|ADH00507.1| Holliday junction DNA helicase RuvB [Bifidobacterium longum subsp.
           longum JDM301]
          Length = 354

 Score =  310 bits (793), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 157/321 (48%), Positives = 216/321 (67%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           S+ +  E      LRP  LE F GQ    + L++F++AA+ R    DH+L  GPPGLGKT
Sbjct: 24  SQPIGNEPVSDEELRPHVLEGFIGQPRLKAQLQLFLDAARKRDVPPDHILLAGPPGLGKT 83

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           TLA +VA EL V  R TSGP +  AGDLA++L++L+  +VLFIDEIHRL    EE+LY A
Sbjct: 84  TLAMIVANELEVPIRVTSGPAVQHAGDLASILSSLDVGEVLFIDEIHRLPRAAEELLYIA 143

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           MEDF++D+MVG+GP A S+ + L RFT+I ATTR G+L +PL+ RFG    L+FY  E+L
Sbjct: 144 MEDFRVDVMVGKGPGASSIPLTLPRFTVIGATTREGMLPSPLRARFGFTAHLDFYPHEEL 203

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           + +++R A + G+ +   +A E+A+RSRGTPRIA RLLRRVRD+A V     +  +    
Sbjct: 204 EKLIERSANVLGVNLDAGSAHELALRSRGTPRIANRLLRRVRDWAIVHDLIVVRPDDVKE 263

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL    ID  G D+LD+  L  I RNF GGPVG+  ++A + E  + +E + EPY++++G
Sbjct: 264 ALALYQIDSEGLDRLDIAVLNAIVRNFNGGPVGLNNLAAMVGEESETVETVCEPYLVREG 323

Query: 309 FIQRTPRGRLLMPIAWQHLGI 329
           F+ RTP+GR+    AWQHLGI
Sbjct: 324 FMIRTPKGRVATEKAWQHLGI 344


>gi|320093777|ref|ZP_08025624.1| crossover junction ATP-dependent DNA helicase RuvB [Actinomyces sp.
           oral taxon 178 str. F0338]
 gi|319979278|gb|EFW10774.1| crossover junction ATP-dependent DNA helicase RuvB [Actinomyces sp.
           oral taxon 178 str. F0338]
          Length = 349

 Score =  309 bits (792), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 160/318 (50%), Positives = 215/318 (67%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E A  + LRP+ L EF GQ      L++ ++AA+ R  + DHVL  GPPGLGKTTLA ++
Sbjct: 24  ERAAEAALRPKRLAEFVGQRVVRGQLQLVLDAARGRGASPDHVLLAGPPGLGKTTLAMII 83

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A E+G + R TSGP I  AGDLAA+L+ L++ D+LFIDEIHRL+   EE+LY AMEDF++
Sbjct: 84  AAEMGTSLRLTSGPAIQHAGDLAAILSGLQEGDILFIDEIHRLARTAEEMLYLAMEDFRV 143

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D++VG+GP A S+ + L RFT + ATTR GLL  PL+DRFG    L FYE ++L+ +V R
Sbjct: 144 DVVVGKGPGATSIPLTLPRFTAVGATTRSGLLPAPLRDRFGFTAHLEFYETDELEQVVAR 203

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A L G  + + AA EIA RSRGTPRIA RLLRRV D+A+V      T   A AAL    
Sbjct: 204 SASLLGAPLGEGAAHEIASRSRGTPRIANRLLRRVVDYAQVHGDGAATLGAARAALALFE 263

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D +G D+LD   L  + + F GGPVG+ T+S  + E  + +E + EPY++++GF+ RT 
Sbjct: 264 VDPLGLDRLDRAVLEAVCKRFAGGPVGLTTLSVTIGEEAETVETVAEPYLVREGFLVRTN 323

Query: 315 RGRLLMPIAWQHLGIDIP 332
           RGR+  P AW+HLG+  P
Sbjct: 324 RGRMATPRAWEHLGLAPP 341


>gi|255327193|ref|ZP_05368268.1| holliday junction DNA helicase RuvB [Rothia mucilaginosa ATCC
           25296]
 gi|255295811|gb|EET75153.1| holliday junction DNA helicase RuvB [Rothia mucilaginosa ATCC
           25296]
          Length = 367

 Score =  309 bits (792), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 153/312 (49%), Positives = 210/312 (67%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP++L++F GQ      L + +EA+K R  + DHVL  GPPGLGKTTLA ++A E+   
Sbjct: 53  LRPKSLDDFVGQRRVRQQLSLVLEASKMRGRSADHVLLSGPPGLGKTTLAMIIAAEMEAP 112

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGP I  +GDLAA+L++L   +VLF+DEIHR+S   EE+LY AMEDF++D++VG+G
Sbjct: 113 LRITSGPAIQHSGDLAAILSSLTPGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDIVVGKG 172

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
             A S+ + L +FTL+ ATTR GLL  PL+DRFG    L FY +E+L+ +++R A L  +
Sbjct: 173 AGATSIPLELPQFTLVGATTRAGLLPGPLRDRFGFTGHLEFYSVEELELVLRRSAGLMDM 232

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T E   EIA RSRGTPRIA RLLRRVRD+A V     I    A  AL    +D  G D
Sbjct: 233 QITSEGFTEIAGRSRGTPRIANRLLRRVRDWALVNGVDRINATDAATALDMYEVDSRGLD 292

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           +LD   L  +   FGGGPVG+ T++  + E  + +E + EPY++++G I RTPRGR+ +P
Sbjct: 293 RLDRAVLEALIHKFGGGPVGLSTLAIAVGEETETVETVAEPYLVREGLIGRTPRGRVALP 352

Query: 322 IAWQHLGIDIPH 333
            AW+HLG++ P 
Sbjct: 353 AAWEHLGLEAPE 364


>gi|149918263|ref|ZP_01906755.1| hypothetical protein PPSIR1_11660 [Plesiocystis pacifica SIR-1]
 gi|149821023|gb|EDM80430.1| hypothetical protein PPSIR1_11660 [Plesiocystis pacifica SIR-1]
          Length = 361

 Score =  309 bits (792), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 163/312 (52%), Positives = 210/312 (67%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPR+ +E+ GQ    + L+V+++AAK R E LDHVL  GPPGLGKTTLAQ+VA E+GV 
Sbjct: 30  LRPRSFDEYVGQRALITKLRVYVQAAKQRDEPLDHVLLHGPPGLGKTTLAQIVAHEMGVV 89

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
             +TSGP I   G LA LLT L + +VLFIDE+HR+S  VEE LY AMED ++D+ VGEG
Sbjct: 90  LHTTSGPAIEHKGVLAGLLTGLGEGEVLFIDEVHRMSPTVEESLYSAMEDRRIDIPVGEG 149

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            +A +  I+L+ FTL+ ATTR  LL+ PL+DRF I   L FY  E+L  IV+R A L GL
Sbjct: 150 SAAITHSISLAPFTLVGATTRTALLSAPLRDRFHIVEGLRFYTDEELAAIVERSASLLGL 209

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
             + E A EI  RSRGTPRIA RL RRVRDF++VA  + IT   A   L  L +D +G +
Sbjct: 210 PASPEGALEIGRRSRGTPRIANRLTRRVRDFSQVAGHERITAADAARFLDTLEVDDLGLN 269

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             D   LT +   F GGPVG++ ++A +  PRD IED+ EP+++Q+G + RTPRGR+   
Sbjct: 270 VSDRSILTTMLELFSGGPVGVDALAASVGMPRDTIEDVHEPFLLQRGLVVRTPRGRMTTA 329

Query: 322 IAWQHLGIDIPH 333
            A  HLG   PH
Sbjct: 330 KAADHLGRPDPH 341


>gi|328907431|gb|EGG27197.1| Holliday junction DNA helicase RuvB [Propionibacterium sp. P08]
          Length = 340

 Score =  309 bits (792), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 154/318 (48%), Positives = 214/318 (67%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E A+ + LRP  L EF GQ      L + + A+K+R  A DHVL  GPPGLGKTTLA ++
Sbjct: 14  EKAEEAALRPGALAEFGGQQRVADQLGLVLAASKSRGTAPDHVLLSGPPGLGKTTLAMII 73

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A E+    R +SGP I  AGDLAA+L++L   +V F+DEIHR+S   EE+LY AMEDF++
Sbjct: 74  ASEMSAPIRISSGPAIQHAGDLAAILSSLVPGEVFFLDEIHRMSKPAEEMLYLAMEDFRV 133

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D++VG+GP A ++ I++  FTL+ ATTR GLL  PL+DRFG   +L++YE+ DL+ IV R
Sbjct: 134 DVVVGKGPGATAIPIDIPPFTLVGATTRAGLLPGPLRDRFGFTAQLDYYEVADLERIVTR 193

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A + G+ + D  A  IA RSRGTPRIA RLLRRVRD+A+V     +T   A  AL    
Sbjct: 194 SAGVIGVELADGTAHTIASRSRGTPRIANRLLRRVRDWADVNRESPVTPHGAQTALDLYE 253

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D +G D+LD   L+ +   FGGGPVG+ T++  + E    +E++ EP++++ GF+ RTP
Sbjct: 254 VDPLGLDRLDRAVLSAVCLKFGGGPVGLSTLAISVGEEPQTVEEVAEPFLVRLGFLMRTP 313

Query: 315 RGRLLMPIAWQHLGIDIP 332
           RGR+    AW+HLG++ P
Sbjct: 314 RGRVATDRAWRHLGLEPP 331


>gi|282864187|ref|ZP_06273243.1| Holliday junction DNA helicase RuvB [Streptomyces sp. ACTE]
 gi|282560674|gb|EFB66220.1| Holliday junction DNA helicase RuvB [Streptomyces sp. ACTE]
          Length = 361

 Score =  309 bits (792), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 158/329 (48%), Positives = 219/329 (66%), Gaps = 1/329 (0%)

Query: 7   LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           L+      ED  + + LRP+ L EF GQ +    L + ++AA AR    DHVL  G PGL
Sbjct: 22  LVDGGADGEDTAVEAALRPKDLGEFIGQEKVREQLDLVLKAALARGATADHVLLSGAPGL 81

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTL+ ++A E+    R TSGP I  AGDLAA+L++L++ +VLF+DEIHR+S   EE+L
Sbjct: 82  GKTTLSMIIAAEMNAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEML 141

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           Y AMEDF++D++VG+GP A ++ + L  FTL+ ATTR GLL  PL+DRFG    + FY  
Sbjct: 142 YMAMEDFRVDVIVGKGPGATAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTAHMEFYAP 201

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
            +L+ +V R A L  +A+  + A EIA RSRGTPRIA RLLRRVRD+A+V     I REI
Sbjct: 202 TELERVVHRSAGLLDVAIDTDGAAEIAGRSRGTPRIANRLLRRVRDYAQVKAEGRIDREI 261

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           A AAL    +D+ G D+LD   L  + + FGGGPVG+ T++  + E R+ +E++ EP+++
Sbjct: 262 AAAALRVYEVDERGLDRLDRGVLEALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPFLV 321

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           ++G + RTPRGR+  P AW HLG+  P  
Sbjct: 322 REGLLARTPRGRVATPAAWAHLGLVPPQH 350


>gi|306822726|ref|ZP_07456104.1| crossover junction ATP-dependent DNA helicase RuvB [Bifidobacterium
           dentium ATCC 27679]
 gi|309801011|ref|ZP_07695143.1| Holliday junction DNA helicase RuvB [Bifidobacterium dentium
           JCVIHMP022]
 gi|304554271|gb|EFM42180.1| crossover junction ATP-dependent DNA helicase RuvB [Bifidobacterium
           dentium ATCC 27679]
 gi|308222547|gb|EFO78827.1| Holliday junction DNA helicase RuvB [Bifidobacterium dentium
           JCVIHMP022]
          Length = 362

 Score =  309 bits (792), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 155/318 (48%), Positives = 217/318 (68%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           V  E      LRP  L+ F GQ    + L++F++AA+ R    DH+L  GPPGLGKTTLA
Sbjct: 32  VGNEPVSDEELRPHILDGFIGQPRLKAQLQLFLDAARKREVPPDHILLAGPPGLGKTTLA 91

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            +VA ELGV  R TSGP I  AGDLA++L++L+  +VLFIDEIHRL    EE+LY AMED
Sbjct: 92  MIVANELGVPIRVTSGPAIQHAGDLASILSSLDAGEVLFIDEIHRLPRAAEELLYIAMED 151

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F++D+MVG+GP A S+ + L RFT+I ATTR G+L +PL+ RFG    L+FY  ++L+ +
Sbjct: 152 FRVDVMVGKGPGASSIPLTLPRFTVIGATTREGMLPSPLRARFGFTAHLDFYPHDELEKL 211

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           ++R + + G+ + + +A ++AMRSRGTPRIA RLLRRVRD+A V   +++  E    AL 
Sbjct: 212 IERSSAVLGVLLEEGSAHQLAMRSRGTPRIANRLLRRVRDWAIVHDLESVHPEDVKQALA 271

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
              ID  G D+LD+  L  I  NF GGPVG+  +SA + E  + +E + EPY++++GF+ 
Sbjct: 272 LYQIDTEGLDRLDIAVLKAIVTNFSGGPVGLNNLSAMVGEESETVETVCEPYLVREGFLI 331

Query: 312 RTPRGRLLMPIAWQHLGI 329
           RTP+GR+    AW+HLG+
Sbjct: 332 RTPKGRVATRKAWEHLGL 349


>gi|158522216|ref|YP_001530086.1| Holliday junction DNA helicase B [Desulfococcus oleovorans Hxd3]
 gi|259495663|sp|A8ZUH7|RUVB_DESOH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|158511042|gb|ABW68009.1| Holliday junction DNA helicase RuvB [Desulfococcus oleovorans Hxd3]
          Length = 343

 Score =  309 bits (792), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 156/324 (48%), Positives = 211/324 (65%), Gaps = 2/324 (0%)

Query: 8   LSRNVSQEDA--DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           ++R+ ++ED   D+  LRP   E++ GQ      L++ I AAK R+E L+HVLF GPPGL
Sbjct: 16  VTRHETEEDTGDDLFSLRPCDFEDYVGQDRTVETLRIAIAAAKQRSEPLEHVLFHGPPGL 75

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLA ++A E+G +   TSGP + K GDL  +LT+L+  D+LF+DEIHRL    EE L
Sbjct: 76  GKTTLAHIIAAEMGTSLTITSGPALEKGGDLIGMLTHLKRGDILFVDEIHRLPRTTEEFL 135

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           YPAMEDF +D +  +G  AR  +  L++F L+ ATTRVGLL+ PL+DRFGI  + +FY  
Sbjct: 136 YPAMEDFAVDFVFDKGIHARCHRYRLNQFVLVGATTRVGLLSAPLRDRFGIFRKFDFYSR 195

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           +DL  IV R A L GL + +    E+A RSRGTPRI  RLL+RVRD+ +V H   IT   
Sbjct: 196 QDLARIVSRSAALMGLTIDETCTMELARRSRGTPRIVNRLLKRVRDYVQVRHGGVITVSA 255

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
            D AL    +D+ G   LD  YL  I + +GGGPVGIE I A L E  D + D++EP+++
Sbjct: 256 IDDALALEGVDEKGLTGLDRSYLETIIQYYGGGPVGIEAIGATLQEETDTLVDVVEPFLL 315

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGI 329
            +G +QRT  GR     A++HLG+
Sbjct: 316 AEGLLQRTSSGRKATEAAYRHLGV 339


>gi|283457994|ref|YP_003362601.1| holliday junction resolvasome, helicase subunit [Rothia
           mucilaginosa DY-18]
 gi|283134016|dbj|BAI64781.1| holliday junction resolvasome, helicase subunit [Rothia
           mucilaginosa DY-18]
          Length = 382

 Score =  309 bits (792), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 153/312 (49%), Positives = 210/312 (67%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP++L++F GQ      L + +EA+K R  + DHVL  GPPGLGKTTLA ++A E+   
Sbjct: 68  LRPKSLDDFVGQRRVRQQLSLVLEASKMRGRSADHVLLSGPPGLGKTTLAMIIAAEMDAP 127

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGP I  +GDLAA+L++L   +VLF+DEIHR+S   EE+LY AMEDF++D++VG+G
Sbjct: 128 LRITSGPAIQHSGDLAAILSSLTPGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDIVVGKG 187

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
             A S+ + L +FTL+ ATTR GLL  PL+DRFG    L FY +E+L+ +++R A L  +
Sbjct: 188 AGATSIPLELPQFTLVGATTRAGLLPGPLRDRFGFTGHLEFYSVEELELVLRRSAGLMDM 247

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T E   EIA RSRGTPRIA RLLRRVRD+A V     I    A  AL    +D  G D
Sbjct: 248 QITSEGFTEIAGRSRGTPRIANRLLRRVRDWALVNGVDRINARDAATALDMYEVDSRGLD 307

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           +LD   L  +   FGGGPVG+ T++  + E  + +E + EPY++++G I RTPRGR+ +P
Sbjct: 308 RLDRAVLESLIHKFGGGPVGLSTLAIAVGEETETVETVAEPYLVREGLIGRTPRGRVALP 367

Query: 322 IAWQHLGIDIPH 333
            AW+HLG++ P 
Sbjct: 368 AAWEHLGMEAPE 379


>gi|119025823|ref|YP_909668.1| Holliday junction DNA helicase RuvB [Bifidobacterium adolescentis
           ATCC 15703]
 gi|171473027|sp|A1A1K3|RUVB_BIFAA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|118765407|dbj|BAF39586.1| holliday junction ATP-dependent DNA helicase ruvB [Bifidobacterium
           adolescentis ATCC 15703]
          Length = 362

 Score =  309 bits (792), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 157/318 (49%), Positives = 216/318 (67%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           V  E      LRP  LE F GQ    + L++F++AA+ R    DH+L  GPPGLGKTTLA
Sbjct: 32  VGNEPVSDEELRPHILEGFIGQPRLKAQLQLFLDAARKRDVPPDHILLAGPPGLGKTTLA 91

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            +VA EL V  R TSGP I  AGDLA++L++L+  +VLFIDEIHRL    EE+LY AMED
Sbjct: 92  MIVANELEVPIRVTSGPAIQHAGDLASILSSLDAGEVLFIDEIHRLPRAAEELLYIAMED 151

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F++D+MVG+GP A S+ + L RFT+I ATTR G+L +PL+ RFG    L+FY  E+L+ +
Sbjct: 152 FRVDVMVGKGPGASSIPLTLPRFTVIGATTREGMLPSPLRARFGFTAHLDFYPHEELEKL 211

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           ++R + + G+ + D AA ++AMRSRGTPRIA RLLRRVRD+A V   +++  +    AL 
Sbjct: 212 IERSSAVLGIQLEDGAARQLAMRSRGTPRIANRLLRRVRDWAIVHDLESVRPDDVKEALA 271

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
              ID  G D+LD+  L  I  NF GGPVG+  ++A + E  + +E + EPY++++GF+ 
Sbjct: 272 LYQIDTEGLDRLDIAVLKAIVTNFNGGPVGLNNLAAMVGEESETVETVCEPYLVREGFLI 331

Query: 312 RTPRGRLLMPIAWQHLGI 329
           RTP+GR+    AW+HLGI
Sbjct: 332 RTPKGRVATRKAWEHLGI 349


>gi|307326762|ref|ZP_07605954.1| Holliday junction DNA helicase RuvB [Streptomyces violaceusniger Tu
           4113]
 gi|306887525|gb|EFN18519.1| Holliday junction DNA helicase RuvB [Streptomyces violaceusniger Tu
           4113]
          Length = 362

 Score =  309 bits (791), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 153/311 (49%), Positives = 212/311 (68%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L EF GQ      L + ++AA+ R    DHVL  G PGLGKTTL+ ++A E+   
Sbjct: 38  LRPKDLGEFVGQERVREQLDLVLKAARQRGGTADHVLLSGAPGLGKTTLSMIIAAEMAAP 97

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGP I  AGDLAA+L++L + +VLF+DEIHR+S   EE+LY AMEDF++D++VG+G
Sbjct: 98  IRITSGPAIQHAGDLAAILSSLAEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDVIVGKG 157

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P A ++ + L  FTL+ ATTR GLL  PL+DRFG    + FY   +L+ ++ R A L  +
Sbjct: 158 PGATAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTGHMEFYAPAELERVIHRSAGLLDV 217

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  E A EIA RSRGTPRIA RLLRRVRD+A+V     ITREIA +AL    +D+ G D
Sbjct: 218 TIEAEGASEIAGRSRGTPRIANRLLRRVRDYAQVKADGVITREIAASALAVYDVDERGLD 277

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           +LD   L+ + + FGGGPVG+ T++  + E R+ +E++ EP+++++G + RTPRGR+  P
Sbjct: 278 RLDRAVLSALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPFLVREGLLARTPRGRIGTP 337

Query: 322 IAWQHLGIDIP 332
            AW HLG+  P
Sbjct: 338 AAWAHLGLTPP 348


>gi|283456063|ref|YP_003360627.1| Holliday junction DNA helicase ruvB [Bifidobacterium dentium Bd1]
 gi|283102697|gb|ADB09803.1| Holliday junction DNA helicase ruvB [Bifidobacterium dentium Bd1]
          Length = 357

 Score =  309 bits (791), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 155/318 (48%), Positives = 217/318 (68%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           V  E      LRP  L+ F GQ    + L++F++AA+ R    DH+L  GPPGLGKTTLA
Sbjct: 27  VGNEPVSDEELRPHILDGFIGQPRLKAQLQLFLDAARKREVPPDHILLAGPPGLGKTTLA 86

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            +VA ELGV  R TSGP I  AGDLA++L++L+  +VLFIDEIHRL    EE+LY AMED
Sbjct: 87  MIVANELGVPIRVTSGPAIQHAGDLASILSSLDAGEVLFIDEIHRLPRAAEELLYIAMED 146

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F++D+MVG+GP A S+ + L RFT+I ATTR G+L +PL+ RFG    L+FY  ++L+ +
Sbjct: 147 FRVDVMVGKGPGASSIPLTLPRFTVIGATTREGMLPSPLRARFGFTAHLDFYPHDELEKL 206

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           ++R + + G+ + + +A ++AMRSRGTPRIA RLLRRVRD+A V   +++  E    AL 
Sbjct: 207 IERSSVVLGVLLEEGSAHQLAMRSRGTPRIANRLLRRVRDWAIVHDLESVHPEDVKQALA 266

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
              ID  G D+LD+  L  I  NF GGPVG+  +SA + E  + +E + EPY++++GF+ 
Sbjct: 267 LYQIDTEGLDRLDIAVLKAIVTNFSGGPVGLNNLSAMVGEESETVETVCEPYLVREGFLI 326

Query: 312 RTPRGRLLMPIAWQHLGI 329
           RTP+GR+    AW+HLG+
Sbjct: 327 RTPKGRVATRKAWEHLGL 344


>gi|189499557|ref|YP_001959027.1| Holliday junction DNA helicase RuvB [Chlorobium phaeobacteroides
           BS1]
 gi|189494998|gb|ACE03546.1| Holliday junction DNA helicase RuvB [Chlorobium phaeobacteroides
           BS1]
          Length = 338

 Score =  309 bits (791), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 161/311 (51%), Positives = 216/311 (69%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  L++F+GQ     N++VFI AA+ R EALDHVLF GPPGLGKTTLA ++A ELG  
Sbjct: 16  IRPLLLDDFSGQKRLTDNMRVFITAARQRGEALDHVLFSGPPGLGKTTLAHIIASELGGG 75

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + +SGP++ K G+LA +LT+L   DVLFIDEIHRL+  VEE LY AMEDF++D+++  G
Sbjct: 76  IKISSGPLLDKPGNLAGILTSLNKGDVLFIDEIHRLTPAVEEYLYSAMEDFRIDILLESG 135

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSAR+V++ L  FTL+ ATTR G+LT+PL+ RFGI  RL++Y  E L+ I+ R A + G+
Sbjct: 136 PSARAVQLKLEPFTLVGATTRAGMLTSPLRARFGISNRLDYYSPEVLERIIVRTATILGV 195

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +   AA EIA RSRGTPRIA RLL+R RDF +VA+A TIT E+A   L  L ID  G D
Sbjct: 196 DIDGNAAVEIARRSRGTPRIANRLLKRARDFTQVANAATITAELARKTLDALEIDDDGLD 255

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + +  +   F GGPVGI +++  + E ++ IE++ EPY+IQ GFI RT RGR+   
Sbjct: 256 DMDKKIMLTLIEKFNGGPVGISSLAVSVGEEQETIEEVYEPYLIQTGFIARTSRGRVATK 315

Query: 322 IAWQHLGIDIP 332
            A+       P
Sbjct: 316 NAYMKFTGSYP 326


>gi|171742915|ref|ZP_02918722.1| hypothetical protein BIFDEN_02032 [Bifidobacterium dentium ATCC
           27678]
 gi|171278529|gb|EDT46190.1| hypothetical protein BIFDEN_02032 [Bifidobacterium dentium ATCC
           27678]
          Length = 362

 Score =  309 bits (791), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 155/318 (48%), Positives = 217/318 (68%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           V  E      LRP  L+ F GQ    + L++F++AA+ R    DH+L  GPPGLGKTTLA
Sbjct: 32  VGNEPVSDEELRPHILDGFIGQPRLKAQLQLFLDAARKREVPPDHILLAGPPGLGKTTLA 91

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            +VA ELGV  R TSGP I  AGDLA++L++L+  +VLFIDEIHRL    EE+LY AMED
Sbjct: 92  MIVANELGVPIRVTSGPAIQHAGDLASILSSLDAGEVLFIDEIHRLPRAAEELLYIAMED 151

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F++D+MVG+GP A S+ + L RFT+I ATTR G+L +PL+ RFG    L+FY  ++L+ +
Sbjct: 152 FRVDVMVGKGPGASSIPLTLPRFTVIGATTREGMLPSPLRARFGFTAHLDFYPHDELEKL 211

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           ++R + + G+ + + +A ++AMRSRGTPRIA RLLRRVRD+A V   +++  E    AL 
Sbjct: 212 IERSSVVLGVLLEEGSAHQLAMRSRGTPRIANRLLRRVRDWAIVHDLESVHPEDVKQALA 271

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
              ID  G D+LD+  L  I  NF GGPVG+  +SA + E  + +E + EPY++++GF+ 
Sbjct: 272 LYQIDTEGLDRLDIAVLKAIVTNFSGGPVGLNNLSAMVGEESETVETVCEPYLVREGFLI 331

Query: 312 RTPRGRLLMPIAWQHLGI 329
           RTP+GR+    AW+HLG+
Sbjct: 332 RTPKGRVATRKAWEHLGL 349


>gi|329296287|ref|ZP_08253623.1| Holliday junction DNA helicase RuvB [Plautia stali symbiont]
          Length = 266

 Score =  309 bits (791), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 154/265 (58%), Positives = 203/265 (76%), Gaps = 1/265 (0%)

Query: 1   MMDREGLLS-RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S  + ++E++    +RP+ L E+ GQ +    + +FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRLVSGSSFTEEESLDRAIRPKLLTEYVGQPQVREQMGIFIQAAKLRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPLDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+G+GP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGDGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY + DL+ IV R A   GL +++E A E+A R+RGTPRIA RLLRRVRDFAEV  + 
Sbjct: 181 LEFYNVPDLQHIVGRSAACLGLTLSEEGALEVARRARGTPRIANRLLRRVRDFAEVRASG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLD 264
            ++ E+A +AL  L +D  GFD +D
Sbjct: 241 NMSGEVAASALDMLNVDNQGFDYMD 265


>gi|254409986|ref|ZP_05023766.1| Holliday junction DNA helicase RuvB [Microcoleus chthonoplastes PCC
           7420]
 gi|196183022|gb|EDX78006.1| Holliday junction DNA helicase RuvB [Microcoleus chthonoplastes PCC
           7420]
          Length = 364

 Score =  309 bits (791), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 155/307 (50%), Positives = 212/307 (69%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  L ++ GQ E    L++ I AAKAR EALDH+L  GPPGLGKTT++ ++A E+G N
Sbjct: 54  IRPHRLADYIGQKELKDVLEIAIAAAKARNEALDHLLLYGPPGLGKTTMSLILATEMGTN 113

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + T+ P + +  D+  +L NL+  D+LFIDEIHRL+ + EE+LYPAMED++LD+ +G+G
Sbjct: 114 CKITAAPALERPRDIVGILVNLKPGDILFIDEIHRLTRMSEELLYPAMEDYRLDITIGKG 173

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            SAR+  I L +FTL+ ATTRVG LT+PL+DRFG+  RL FYE E+L  IVQR A+L   
Sbjct: 174 QSARTRSIPLPQFTLVGATTRVGSLTSPLRDRFGLIQRLRFYEPEELSLIVQRTAQLLQT 233

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +++E A EIA RSRGTPRIA RLLRRVRD+A+V     I  ++A  AL    +D  G D
Sbjct: 234 PMSEEGAIEIARRSRGTPRIANRLLRRVRDYAQVKKMGVINPDVAAEALEVFNVDPAGLD 293

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             D   L+++   F GGPVG+E ++A   E    IE++ EPY++Q G++ RTPRGR+   
Sbjct: 294 WTDRLVLSVMIEQFQGGPVGLEAVAAATGEDAQTIEEVYEPYLLQIGYLHRTPRGRVATD 353

Query: 322 IAWQHLG 328
            A +HLG
Sbjct: 354 AARKHLG 360


>gi|184201010|ref|YP_001855217.1| Holliday junction DNA helicase RuvB [Kocuria rhizophila DC2201]
 gi|183581240|dbj|BAG29711.1| Holliday junction DNA helicase RuvB [Kocuria rhizophila DC2201]
          Length = 366

 Score =  308 bits (790), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 155/311 (49%), Positives = 212/311 (68%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP TL++F GQ    + L + +EA+K R    DHVL  GPPGLGKTTLA ++A EL V 
Sbjct: 30  LRPGTLDDFVGQKRVRAQLSLVLEASKLRGRTADHVLLSGPPGLGKTTLAMIIAEELEVP 89

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R +SGP I  AGDLAA+L++L   +VLF+DEIHR+S   EE+LY AMEDF++D++VG+G
Sbjct: 90  LRISSGPAIQHAGDLAAILSSLTHGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDIVVGKG 149

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
             A S+ ++L  FTL+ ATTR GLL  PL+DRFG    L FY + +L+ +++R A L  L
Sbjct: 150 AGATSIPLDLPPFTLVGATTRAGLLPGPLRDRFGFTGHLEFYSVPELELVLRRSAGLLDL 209

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
           A+T EA  E+A RSRGTPRIA RLLRRVRD+A V   + I    A AAL    +D  G D
Sbjct: 210 AMTSEAFSEVASRSRGTPRIANRLLRRVRDWALVHGVERIDARAAGAALDMYEVDARGLD 269

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           +LD   L+ +   F GGPVG+ T++  + E  + +E + EP+++++G + RTPRGR+ M 
Sbjct: 270 RLDRNVLSALVGKFNGGPVGLSTLAIAVGEETETVETVAEPFLVREGLLGRTPRGRIAMA 329

Query: 322 IAWQHLGIDIP 332
            AW+HLG+ +P
Sbjct: 330 AAWEHLGLAVP 340


>gi|319947802|ref|ZP_08021996.1| Holliday junction DNA helicase RuvB [Dietzia cinnamea P4]
 gi|319438526|gb|EFV93452.1| Holliday junction DNA helicase RuvB [Dietzia cinnamea P4]
          Length = 368

 Score =  308 bits (790), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 163/331 (49%), Positives = 219/331 (66%), Gaps = 1/331 (0%)

Query: 5   EGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E  LS +++  D D+   LRPR+L EF GQ      L + + AA  R    DH+LF GPP
Sbjct: 19  EAELSASLTPFDTDVEGALRPRSLGEFIGQETVREQLDLVLTAATRRGVVPDHLLFSGPP 78

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKT+LA +VA ELG + R TSGP + + GDLAA+L+NL + DVLFIDEIHR++   EE
Sbjct: 79  GLGKTSLAMIVAAELGGSLRITSGPALERPGDLAAMLSNLIEGDVLFIDEIHRIARPAEE 138

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LY AMEDF++D+MVG+GP A S+ + ++ FTL+ ATTR G LT PL+DRFG    ++FY
Sbjct: 139 MLYLAMEDFRIDIMVGKGPGATSIPLEIAPFTLVGATTRSGALTGPLRDRFGFTAHMDFY 198

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
              DL  IV R A++  + V  +AA EIA RSRGTPRIA RLLRRVRDFAEV     IT 
Sbjct: 199 TDADLARIVTRAAEILAIPVDPDAALEIAGRSRGTPRIANRLLRRVRDFAEVRADGRITV 258

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
            +A AAL    +D++G D+LD   L  +     GGPVG+ T++  + E    +E++ EP+
Sbjct: 259 PVARAALEVYEVDELGLDRLDRAVLRALLVQHEGGPVGLSTLAVAVGEESTTLEEVCEPF 318

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           +++ G + RTPRGR+    AW HLG+  P +
Sbjct: 319 LVRAGLLARTPRGRIATAAAWDHLGLTRPDK 349


>gi|318042849|ref|ZP_07974805.1| Holliday junction DNA helicase RuvB [Synechococcus sp. CB0101]
          Length = 362

 Score =  308 bits (790), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 159/316 (50%), Positives = 215/316 (68%), Gaps = 4/316 (1%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           + +ED+    LRPR L ++ GQ E    L + +EA +AR EALDHVL  GPPGLGKTT+A
Sbjct: 42  IQREDS----LRPRRLADYIGQRELKQVLGIAVEATRAREEALDHVLLYGPPGLGKTTMA 97

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            V+A ELGV  R TS P + +  D+  LL NLE R++LFIDEIHRL+ + EEILYPAMED
Sbjct: 98  LVLAEELGVRCRITSAPALERPRDIVGLLVNLEPRELLFIDEIHRLNRVAEEILYPAMED 157

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F+LDL VG+G +AR+  + ++ FTL+ ATTR G L++PL+DRFG+  RL FY ++DL+ I
Sbjct: 158 FRLDLTVGKGTTARTRSLPIAPFTLVGATTRAGSLSSPLRDRFGLIQRLEFYGLDDLQAI 217

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           V R A L  + +   AA E+A R RGTPRIA RLLRRVRD A V     ++ ++   AL 
Sbjct: 218 VLRAAGLLQIELDSSAALEVARRCRGTPRIANRLLRRVRDVAAVGGHGRVSPDLVHEALS 277

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
              +D  G D  D R L ++   +GGGPVG++T++AGL E    +E ++EP+++QQG +Q
Sbjct: 278 LHRVDGRGLDASDRRLLHLLQHGYGGGPVGLDTLAAGLGEDPATLEAVVEPFLLQQGLLQ 337

Query: 312 RTPRGRLLMPIAWQHL 327
           RTPRGR++      HL
Sbjct: 338 RTPRGRVITEAGLAHL 353


>gi|269956460|ref|YP_003326249.1| Holliday junction DNA helicase RuvB [Xylanimonas cellulosilytica
           DSM 15894]
 gi|269305141|gb|ACZ30691.1| Holliday junction DNA helicase RuvB [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 367

 Score =  308 bits (790), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 162/318 (50%), Positives = 218/318 (68%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E A  + LRP+ L+EF GQ      L + ++AA AR  A DHVL  GPPGLGKTTLA ++
Sbjct: 25  ERAAEAALRPKRLDEFVGQRVVRDQLSLVLQAALARGAAPDHVLLSGPPGLGKTTLAMII 84

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A EL  + R TSGP I  AGDLAA+L++LE+ +VLFIDEIHRL+   EE+LY AMEDF++
Sbjct: 85  ASELNTSLRVTSGPAIQHAGDLAAVLSSLEEGEVLFIDEIHRLARPAEELLYVAMEDFRV 144

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D++VG+G  A ++ + L  FT++ ATTR GLL  PL+DRFG    L+FY+  DL+ ++ R
Sbjct: 145 DVIVGKGAGASAIPLALPPFTVVGATTRSGLLPAPLRDRFGFTGHLDFYDAADLERVIVR 204

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A L G+ +   AA EIA RSRGTPRIA RLLRRVRD+A+V     +    A AAL    
Sbjct: 205 SAGLLGVELHHAAAHEIAGRSRGTPRIANRLLRRVRDWAQVRGDGRLDLAAAHAALDVYE 264

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D +G D+LD   L  + R FGGGPVG+ T++  + E  D +E + EPY++++GF+ RTP
Sbjct: 265 VDPIGLDRLDRSVLDALCRRFGGGPVGLSTLAMTVGEEPDTVETVAEPYLVREGFVARTP 324

Query: 315 RGRLLMPIAWQHLGIDIP 332
           RGR+  P+AW+HLG+  P
Sbjct: 325 RGRVATPLAWEHLGLVAP 342


>gi|302533403|ref|ZP_07285745.1| Holliday junction DNA helicase RuvB [Streptomyces sp. C]
 gi|302442298|gb|EFL14114.1| Holliday junction DNA helicase RuvB [Streptomyces sp. C]
          Length = 356

 Score =  308 bits (790), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 153/311 (49%), Positives = 211/311 (67%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L EF GQ +    L + ++AA+ R    DHVL  G PGLGKTTL+ ++A E+G  
Sbjct: 30  LRPKDLGEFVGQEKVRQQLDLVLKAARQRGATADHVLLSGAPGLGKTTLSMIIAAEMGAP 89

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGP I  AGDLAA+L++L++ +VLF+DEIHR+S   EE+LY AMEDF++D++VG+G
Sbjct: 90  IRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDVIVGKG 149

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P A ++ + L  FTL+ ATTR GLL  PL+DRFG    + FY   +L+ +V R A L  +
Sbjct: 150 PGATAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTGHMEFYAPAELERVVHRSAGLLDV 209

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +    A EIA RSRGTPRIA RLLRRVRD+A+V     ITRE+A  AL    +D  G D
Sbjct: 210 EIDTAGAAEIAGRSRGTPRIANRLLRRVRDYAQVKADGVITREVAATALQVYEVDARGLD 269

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           +LD   L  + + FGGGPVG+ T++  + E R+ +E++ EP+++++G + RTPRGR+  P
Sbjct: 270 RLDRAVLEALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPFLVREGLLARTPRGRIATP 329

Query: 322 IAWQHLGIDIP 332
            AW HLG+  P
Sbjct: 330 AAWAHLGLVPP 340


>gi|296393860|ref|YP_003658744.1| Holliday junction DNA helicase RuvB [Segniliparus rotundus DSM
           44985]
 gi|296181007|gb|ADG97913.1| Holliday junction DNA helicase RuvB [Segniliparus rotundus DSM
           44985]
          Length = 348

 Score =  308 bits (790), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 151/311 (48%), Positives = 210/311 (67%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPR L++F GQ +    L++ +  AK+R    DHVLF GPPGLGKT+LA +VA ELG  
Sbjct: 26  LRPRALDDFIGQAKVREQLRLLLHGAKSRGTVPDHVLFSGPPGLGKTSLAMIVASELGCA 85

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGP + +AGDLAALL+NL + DVLFIDEIHR++   EE+LY AMEDF++D++VG+G
Sbjct: 86  LRLTSGPALERAGDLAALLSNLVEGDVLFIDEIHRMARPAEEMLYLAMEDFRVDVVVGKG 145

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P A ++ + L+ FTL+ ATTR G LTNPL+DRFG    + FY   +L  ++ R AK+  +
Sbjct: 146 PGAMAIPLTLAPFTLVGATTRTGALTNPLRDRFGFVGHMEFYTPPELAQVLARSAKILAV 205

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  +AA EIA RSRGTPRIA RLLRRVRD+A+V     +    A AAL    +D++G D
Sbjct: 206 ELAPDAAIEIASRSRGTPRIANRLLRRVRDYAQVRGDGVVDLAAARAALQIFDVDELGLD 265

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           +LD   L+ +    GGGPVG+ T++  + E    + ++ EP++++ G + RTPRGR+   
Sbjct: 266 RLDRAVLSALVSGHGGGPVGVSTLAVAVGEEPATVAEVCEPFLVRAGLVARTPRGRVATQ 325

Query: 322 IAWQHLGIDIP 332
             W H+G+  P
Sbjct: 326 AGWAHMGLKPP 336


>gi|300741594|ref|ZP_07071615.1| holliday junction DNA helicase RuvB [Rothia dentocariosa M567]
 gi|311113688|ref|YP_003984910.1| crossover junction ATP-dependent DNA helicase RuvB [Rothia
           dentocariosa ATCC 17931]
 gi|300380779|gb|EFJ77341.1| holliday junction DNA helicase RuvB [Rothia dentocariosa M567]
 gi|310945182|gb|ADP41476.1| crossover junction ATP-dependent DNA helicase RuvB [Rothia
           dentocariosa ATCC 17931]
          Length = 363

 Score =  308 bits (790), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 152/311 (48%), Positives = 209/311 (67%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP++L++F GQ      L + +EA+K R  + DHVL  GPPGLGKTTLA ++A E+   
Sbjct: 49  LRPKSLDDFVGQKRVRQQLSLVLEASKMRGRSADHVLLSGPPGLGKTTLAMIIAAEMEAP 108

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGP I  +GDLAA+L++L   +VLF+DEIHR+S   EE+LY AMEDF++D++VG+G
Sbjct: 109 LRITSGPAIQHSGDLAAILSSLTPGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDIVVGKG 168

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
             A S+ + L +FTL+ ATTR GLL  PL+DRFG    L FY + +L+ +++R A L  +
Sbjct: 169 AGATSIPLELPQFTLVGATTRAGLLPGPLRDRFGFTGHLEFYSVPELELVLRRSAGLMDM 228

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T E   EIA RSRGTPRIA RLLRRVRD+A V     I    A  AL    +D  G D
Sbjct: 229 RITSEGYAEIAGRSRGTPRIANRLLRRVRDWALVNDVHDINSHDAATALDMYEVDARGLD 288

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           +LD   L  +   FGGGPVG+ T++  + E  + +E + EPY++++G I RTPRGR+ +P
Sbjct: 289 RLDRAVLESLIHKFGGGPVGLSTLAIAVGEETETVETVAEPYLVREGLIGRTPRGRVALP 348

Query: 322 IAWQHLGIDIP 332
            AW+HLG++ P
Sbjct: 349 AAWEHLGLEAP 359


>gi|306780630|ref|ZP_07418967.1| holliday junction DNA helicase RuvB [Mycobacterium tuberculosis
           SUMu002]
 gi|308326461|gb|EFP15312.1| holliday junction DNA helicase RuvB [Mycobacterium tuberculosis
           SUMu002]
          Length = 355

 Score =  308 bits (790), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 157/324 (48%), Positives = 218/324 (67%), Gaps = 1/324 (0%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
            V + D D+SL RPR+L EF GQ      L++ IE AK R    DH+L  GPPGLGKT+L
Sbjct: 14  TVGEGDIDVSL-RPRSLREFIGQPRVREQLQLVIEGAKNRGGTPDHILLSGPPGLGKTSL 72

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           A ++A ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++   EE+LY AME
Sbjct: 73  AMIIAAELGSSLRVTSGPALERAGDLAAMLSNLVEHDVLFIDEIHRIARPAEEMLYLAME 132

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           DF++D++VG+GP A S+ + ++ FTL+ ATTR G LT PL+DRFG    ++FYE  +L+ 
Sbjct: 133 DFRVDVVVGKGPGATSIPLEVAPFTLVGATTRSGALTGPLRDRFGFTAHMDFYEPAELER 192

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           ++ R A + G+ +  +A  EIA RSRGTPRIA RLLRRVRDFAEV     ITR++A AAL
Sbjct: 193 VLARSAGILGIELGADAGAEIARRSRGTPRIANRLLRRVRDFAEVRADGVITRDVAKAAL 252

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
               +D++G D+LD   L+ + R+FGGGPVG+ T++  + E    +E++ EP++++ G +
Sbjct: 253 EVYDVDELGLDRLDRAVLSALTRSFGGGPVGVSTLAVAVGEEAATVEEVCEPFLVRAGMV 312

Query: 311 QRTPRGRLLMPIAWQHLGIDIPHR 334
            RT   R+         G D   R
Sbjct: 313 ARTRAARVATAPGLDAPGHDATGR 336


>gi|314981357|gb|EFT25451.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL110PA3]
          Length = 342

 Score =  308 bits (789), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 153/318 (48%), Positives = 214/318 (67%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E A+ + LRP  L EF GQ      L + + A+K+R    DHVL  GPPGLGKTTLA ++
Sbjct: 16  EKAEEAALRPGALAEFGGQQRVADQLGLVLAASKSRGTTPDHVLLSGPPGLGKTTLAMII 75

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A E+    R +SGP I  AGDLAA+L++L   +V F+ EIHR+S   EE+LY AMEDF++
Sbjct: 76  ASEMSAPIRISSGPAIQHAGDLAAILSSLVPGEVFFLGEIHRMSKPAEEMLYLAMEDFRV 135

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D++VG+GP A ++ I +  FTL+ ATTR GLL  PL+DRFG   +L++YE+ DL+ IV R
Sbjct: 136 DVVVGKGPGATAIPIEIPPFTLVGATTRAGLLPGPLRDRFGFTAQLDYYEVADLERIVTR 195

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A + G+ + + AA  IA RSRGTPRIA RLLRRVRD+A+V H   +T + A+ AL    
Sbjct: 196 SAGVIGVELAEGAAHTIASRSRGTPRIANRLLRRVRDWADVHHESPVTPQGAETALDLYE 255

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D +G D+LD   L  +   FGGGPVG+ T++  + E    +E++ EP++++ GF+ RTP
Sbjct: 256 VDPLGLDRLDRAVLHAVCLKFGGGPVGLSTLAISVGEEPQTVEEVAEPFLVRLGFLMRTP 315

Query: 315 RGRLLMPIAWQHLGIDIP 332
           RGR+    AW+HLG++ P
Sbjct: 316 RGRVATDRAWRHLGLEPP 333


>gi|116074410|ref|ZP_01471672.1| Holliday junction DNA helicase RuvB [Synechococcus sp. RS9916]
 gi|116069715|gb|EAU75467.1| Holliday junction DNA helicase RuvB [Synechococcus sp. RS9916]
          Length = 347

 Score =  308 bits (789), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 161/318 (50%), Positives = 213/318 (66%), Gaps = 8/318 (2%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPR L ++ GQ E    L + ++AA AR +ALDHVL  GPPGLGKTT+A V+A ELGV 
Sbjct: 19  LRPRRLNDYIGQRELKQVLGIAVQAASARGDALDHVLLYGPPGLGKTTMALVLAEELGVT 78

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TS P + +  D+  LL NL+ R++LFIDEIHRL+ + EE+LYPAMED +LDL VG+G
Sbjct: 79  CRITSAPALERPRDIVGLLVNLQPRELLFIDEIHRLTRVAEELLYPAMEDRRLDLTVGKG 138

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            +AR+  ++L  FTL+ ATTR G L++PL+DRFG+  RL FY  EDL+ IV+R A L GL
Sbjct: 139 STARTRTLDLPPFTLVGATTRAGSLSSPLRDRFGLIQRLEFYGQEDLEAIVERAAGLLGL 198

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV--------AHAKTITREIADAALLRL 253
            ++ +   EIA R RGTPRIA RLLRRVRD A V          A  I  E+ D AL   
Sbjct: 199 KLSPQGCTEIARRCRGTPRIANRLLRRVRDVASVRGAASGDPVEATVIDAELVDEALSLH 258

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D  G D  D R L ++ +  GGGPVG++T++A L E    +E ++EPY++Q GF+QRT
Sbjct: 259 RVDGRGLDASDRRLLELLLQGHGGGPVGLDTLAAALGEDSTTLETVVEPYLLQLGFLQRT 318

Query: 314 PRGRLLMPIAWQHLGIDI 331
           PRGR++     +HLG  +
Sbjct: 319 PRGRVVTAAGRRHLGWPV 336


>gi|332670538|ref|YP_004453546.1| Holliday junction DNA helicase RuvB [Cellulomonas fimi ATCC 484]
 gi|332339576|gb|AEE46159.1| Holliday junction DNA helicase RuvB [Cellulomonas fimi ATCC 484]
          Length = 355

 Score =  308 bits (789), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 161/316 (50%), Positives = 220/316 (69%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E A  + LRPRTL+EF GQ      L + ++AA+ R  A DHVL  GPPGLGKTTLA ++
Sbjct: 30  ERAAEAALRPRTLDEFVGQRVVRDQLSLVLQAARRRGRAPDHVLLSGPPGLGKTTLAMII 89

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A ELG + R TSGP I  AGDLAA+L++LE+ +VLF+DEIHRL+   EE+LY AMEDF++
Sbjct: 90  AAELGTSLRVTSGPAIQHAGDLAAVLSSLEEGEVLFLDEIHRLARPAEELLYVAMEDFRV 149

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D++VG+G  A ++ + L  FT++ ATTR GLL  PL+DRFG    L+FYE  +L+ ++ R
Sbjct: 150 DVVVGKGAGASAIPLALPPFTVVGATTRAGLLPAPLRDRFGFTGHLDFYETHELERVLLR 209

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A L G+ +  +AA EIA RSRGTPRIA RLLRRVRD+AEV     ++   A AAL    
Sbjct: 210 SAGLLGVPLDGDAAAEIASRSRGTPRIANRLLRRVRDWAEVRGDGMLSLAAARAALEVYE 269

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D  G D+LD   L+ +   FGGGPVG+ T++  + E  + +E + EP+++++G I RTP
Sbjct: 270 VDARGLDRLDRAVLSALCTRFGGGPVGLTTLAVAVGEEPETVETVAEPFLVREGLIGRTP 329

Query: 315 RGRLLMPIAWQHLGID 330
           RGR+ +P AW+HLG+D
Sbjct: 330 RGRVALPGAWEHLGLD 345


>gi|315655416|ref|ZP_07908316.1| crossover junction ATP-dependent DNA helicase RuvB [Mobiluncus
           curtisii ATCC 51333]
 gi|315490356|gb|EFU79981.1| crossover junction ATP-dependent DNA helicase RuvB [Mobiluncus
           curtisii ATCC 51333]
          Length = 345

 Score =  308 bits (789), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 156/311 (50%), Positives = 212/311 (68%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+TL +F GQ    + L++ + AAK R EA DHVL  GPPGLGKTTLA ++A E+  +
Sbjct: 29  LRPKTLGDFIGQETVKTQLQLVLSAAKERGEAADHVLLAGPPGLGKTTLAMIIAAEMSSS 88

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGP I  AGDLAA+L++L++ DVLFIDEIHRL+   EE+LY AMEDF++D++VG+G
Sbjct: 89  LRLTSGPAIGHAGDLAAILSSLQEGDVLFIDEIHRLARPAEEMLYLAMEDFRVDVVVGKG 148

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P A S+ + L  FTL+ ATTR GLL  PL+DRFG    L  Y+  DL  IV+R A L G 
Sbjct: 149 PGATSIPLTLPPFTLVGATTRAGLLPAPLRDRFGFTAHLEPYQPPDLALIVKRSASLLGS 208

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T++AA E+A RSRGTPR+A RLLRRV DFA V        E A  AL    +D++G D
Sbjct: 209 EITEDAASEVARRSRGTPRVANRLLRRVIDFALVHGHPRCDLESARRALELFEVDELGLD 268

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           +LD   L  +   F GGPVG+ T++  + E  + IE+++EP+++++G + RT RGR + P
Sbjct: 269 RLDRSVLRAVIERFAGGPVGLHTLAVSVGEEPETIEEVVEPFLVREGLLIRTNRGRAITP 328

Query: 322 IAWQHLGIDIP 332
              +HLG+ +P
Sbjct: 329 KGCEHLGVTLP 339


>gi|213692040|ref|YP_002322626.1| Holliday junction DNA helicase RuvB [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|254767412|sp|B7GR18|RUVB_BIFLI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|213523501|gb|ACJ52248.1| Holliday junction DNA helicase RuvB [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320458152|dbj|BAJ68773.1| holliday junction DNA helicase RuvB [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 354

 Score =  308 bits (789), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 156/321 (48%), Positives = 217/321 (67%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           S+ +  E A    LRP  L  F GQ    + L++F++AA+ R    DH+L  GPPGLGKT
Sbjct: 24  SQPIGNEPASDEELRPHVLGGFIGQPRLKAQLQLFLDAARKRDVPPDHILLAGPPGLGKT 83

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           TLA +VA EL V  R TSGP +  AGDLA++L++L+  +VLFIDEIHRL    EE+LY A
Sbjct: 84  TLAMIVANELEVPIRVTSGPAVQHAGDLASILSSLDTGEVLFIDEIHRLPRAAEELLYIA 143

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           MEDF++D+MVG+GP A S+ + L RFT+I ATTR G+L +PL+ RFG    L+FY  ++L
Sbjct: 144 MEDFRVDVMVGKGPGASSIPLTLPRFTVIGATTREGMLPSPLRARFGFTAHLDFYPHDEL 203

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           + +++R A + G+ + D +A E+A+RSRGTPRIA RLLRRVRD+A V     +  +    
Sbjct: 204 QKLIERSANVLGVNLGDGSARELALRSRGTPRIANRLLRRVRDWAIVHDLIEVRSDDVKE 263

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL    ID  G D+LD+  L  I RNF GGPVG+  ++A + E  + +E + EPY++++G
Sbjct: 264 ALALYQIDSEGLDRLDIAVLDAIVRNFNGGPVGLNNLAAMVGEESETVETVCEPYLVREG 323

Query: 309 FIQRTPRGRLLMPIAWQHLGI 329
           F+ RTP+GR+    AW+HLGI
Sbjct: 324 FLIRTPKGRVATEKAWRHLGI 344


>gi|327330391|gb|EGE72140.1| holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL097PA1]
          Length = 342

 Score =  308 bits (789), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 153/318 (48%), Positives = 214/318 (67%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E A+ + LRP  L EF GQ      L + + A+K+R    DHVL  GPPGLGKTTLA ++
Sbjct: 16  EKAEEAALRPGALAEFGGQQRVADQLGLVLAASKSRGTTPDHVLLSGPPGLGKTTLAMII 75

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A E+    R +SGP I  AGDLAA+L++L   +V F+DEIHR+S   EE+LY AMEDF++
Sbjct: 76  ASEMSAPIRISSGPAIQHAGDLAAILSSLVPGEVFFLDEIHRMSKPAEEMLYLAMEDFRV 135

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D++VG+GP A ++ I +  FTL+ ATTR GLL  PL+DRFG   +L++YE+ DL+ IV R
Sbjct: 136 DVVVGKGPGATAIPIEIPPFTLVGATTRAGLLPGPLRDRFGFTAQLDYYEVADLERIVTR 195

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A + G+ + + AA  IA RSRGTPRIA RLLRRVRD+A+V H   +T + A+ AL    
Sbjct: 196 SAGVIGVELAEGAAHTIASRSRGTPRIANRLLRRVRDWADVHHESPVTPQGAETALDLYE 255

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D +G D+LD   L  +   FGGGPVG+ T++  + E    +E++ EP++++ GF+ RTP
Sbjct: 256 VDPLGLDRLDRAVLHAVCLKFGGGPVGLSTLAISVGEEPQTVEEVAEPFLVRLGFLMRTP 315

Query: 315 RGRLLMPIAWQHLGIDIP 332
           RGR+    AW+HL ++ P
Sbjct: 316 RGRVATDRAWRHLDLEPP 333


>gi|297170852|gb|ADI21871.1| holliday junction resolvasome, helicase subunit [uncultured
           verrucomicrobium HF0130_25O04]
          Length = 301

 Score =  308 bits (789), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 148/283 (52%), Positives = 204/283 (72%)

Query: 43  FIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTN 102
            + AA+ R EAL HVL  GPPGLGKTTLA ++ REL  + R TSGPVI K GDLA LLTN
Sbjct: 1   MVGAARKREEALKHVLLCGPPGLGKTTLAHIIGRELKRDVRITSGPVIDKPGDLAGLLTN 60

Query: 103 LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTR 162
           L++ D+LFIDEIHR+   VEE LY AMED+++D+M+ +GP+ARSV++ + RFTL+ ATTR
Sbjct: 61  LQEGDLLFIDEIHRIPKTVEEYLYSAMEDYRIDIMIDQGPNARSVRLEIPRFTLVGATTR 120

Query: 163 VGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
           VGLLT+P++ RF +  RL++Y+ +DL  IV R   L    +  E A E+A R+RGTPRIA
Sbjct: 121 VGLLTSPMRSRFTLQTRLDYYDRKDLTKIVLRSCNLLDCPIDQEGAEELAGRARGTPRIA 180

Query: 223 GRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGI 282
             L+   RD+A+      ITRE+A +AL  LAID  G D++D R L  +A+N+ GGPVG+
Sbjct: 181 NNLIHFTRDYADEKRDGKITREVACSALELLAIDAHGLDEMDKRILLTMAKNYKGGPVGL 240

Query: 283 ETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQ 325
            TI+ G+ E    +E++ EP++IQ+G+++RTP+GR+L P  W+
Sbjct: 241 GTIAVGVGEEEHTLEEVHEPFLIQEGYLKRTPQGRILTPRGWE 283


>gi|325971232|ref|YP_004247423.1| Holliday junction ATP-dependent DNA helicase ruvB [Spirochaeta sp.
           Buddy]
 gi|324026470|gb|ADY13229.1| Holliday junction ATP-dependent DNA helicase ruvB [Spirochaeta sp.
           Buddy]
          Length = 353

 Score =  308 bits (788), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 151/327 (46%), Positives = 217/327 (66%), Gaps = 1/327 (0%)

Query: 4   REGLLSRNVSQE-DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           +  ++S +  QE D   ++LRP+ L++F GQ     NL VF++AA+ R E LDH   +GP
Sbjct: 13  QSSVVSTSFQQEADKQENILRPKMLKDFQGQQRLKDNLAVFVQAARERKEPLDHTFLIGP 72

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++A E+G   R TS P + K  DLA +LTN+ +  V FIDEIHRL   +E
Sbjct: 73  PGLGKTTLASIIANEMGAEIRMTSAPALDKPKDLAGILTNVTEGSVFFIDEIHRLKPALE 132

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LY AMEDF++D ++G+GP+AR+++I L +FTL+ ATT+ G +++PL  RFGI   + F
Sbjct: 133 EMLYIAMEDFEIDWVIGQGPAARTMRIPLPKFTLVGATTKAGSVSSPLSSRFGITCHIEF 192

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  ++L +I+ R A++  + +  +A  ++A  SRGTPRIA RLLRR+RDFA V    T+T
Sbjct: 193 YNEQELASIIARSAQIMDVQIDKKAIVQLARCSRGTPRIANRLLRRLRDFAMVMGDGTVT 252

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             + D  + RL ID  G +  D   L  I   + GGPVG ET+S  + E  +++ED  EP
Sbjct: 253 VAVVDHGMERLGIDNNGLETQDRNILRTIIEFYDGGPVGAETLSISVGEAIESLEDFYEP 312

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           Y+IQ+GF++RTPRGR+    A+  LGI
Sbjct: 313 YLIQKGFLKRTPRGRMTTKKAYDLLGI 339


>gi|145640254|ref|ZP_01795838.1| Holliday junction DNA helicase B [Haemophilus influenzae R3021]
 gi|145274840|gb|EDK14702.1| Holliday junction DNA helicase B [Haemophilus influenzae 22.4-21]
          Length = 263

 Score =  308 bits (788), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 148/250 (59%), Positives = 190/250 (76%)

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           +GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS  +EE+LYPAMED+QLD+M
Sbjct: 1   MGVNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIM 60

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
           +GEGP+ARS+K++L  FTL+ ATTR G LT+PL+DRFGI  RL FY +EDL +IV R A 
Sbjct: 61  IGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVARSAD 120

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257
              L +  +AA E+A RSRGTPRIA RLLRRVRD+A+V +   I+  +A  AL  L +D 
Sbjct: 121 CLNLELEQQAAFEVARRSRGTPRIANRLLRRVRDYADVRNGGIISINVAKQALSMLDVDD 180

Query: 258 MGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317
            GFD LD + L+ +   F GGPVG++ ++A + E RD IED++EPY+IQQGF+QRTPRGR
Sbjct: 181 AGFDYLDRKLLSAVIERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTPRGR 240

Query: 318 LLMPIAWQHL 327
           +     ++H 
Sbjct: 241 IATSQTYRHF 250


>gi|154487344|ref|ZP_02028751.1| hypothetical protein BIFADO_01194 [Bifidobacterium adolescentis
           L2-32]
 gi|154083862|gb|EDN82907.1| hypothetical protein BIFADO_01194 [Bifidobacterium adolescentis
           L2-32]
          Length = 362

 Score =  308 bits (788), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 156/318 (49%), Positives = 216/318 (67%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           V  E      LRP  L+ F GQ    + L++F++AA+ R    DH+L  GPPGLGKTTLA
Sbjct: 32  VGNEPVSDEELRPHILKGFIGQPRLKAQLQLFLDAARKRDVPPDHILLAGPPGLGKTTLA 91

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            +VA EL V  R TSGP I  AGDLA++L++L+  +VLFIDEIHRL    EE+LY AMED
Sbjct: 92  MIVANELEVPIRVTSGPAIQHAGDLASILSSLDAGEVLFIDEIHRLPRAAEELLYIAMED 151

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F++D+MVG+GP A S+ + L RFT+I ATTR G+L +PL+ RFG    L+FY  E+L+ +
Sbjct: 152 FRVDVMVGKGPGASSIPLTLPRFTVIGATTREGMLPSPLRARFGFTAHLDFYPHEELEKL 211

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           ++R + + G+ + D AA ++AMRSRGTPRIA RLLRRVRD+A V   +++  +    AL 
Sbjct: 212 IERSSAVLGIQLEDGAARQLAMRSRGTPRIANRLLRRVRDWAIVHDLESVRPDDVKEALA 271

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
              ID  G D+LD+  L  I  NF GGPVG+  ++A + E  + +E + EPY++++GF+ 
Sbjct: 272 LYQIDTEGLDRLDIAVLKAIVTNFNGGPVGLNNLAAMVGEESETVETVCEPYLVREGFLI 331

Query: 312 RTPRGRLLMPIAWQHLGI 329
           RTP+GR+    AW+HLGI
Sbjct: 332 RTPKGRVATRKAWEHLGI 349


>gi|269795059|ref|YP_003314514.1| Holliday junction DNA helicase subunit RuvB [Sanguibacter keddieii
           DSM 10542]
 gi|269097244|gb|ACZ21680.1| Holliday junction DNA helicase subunit RuvB [Sanguibacter keddieii
           DSM 10542]
          Length = 355

 Score =  308 bits (788), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 157/318 (49%), Positives = 216/318 (67%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E A  + LRPR L+EF GQ      L + ++AA  R  + DHVL  GPPGLGKTTLA ++
Sbjct: 30  ERAAEAALRPRRLDEFVGQRVVRDQLSLVLDAAIGRGSSPDHVLLSGPPGLGKTTLAMII 89

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A ELG + R TSGP I  AGDLAA+L++L++ +VLFIDEIHRL+   EE+LY AMEDF++
Sbjct: 90  AAELGASLRVTSGPAIQHAGDLAAVLSSLDEGEVLFIDEIHRLARPAEELLYVAMEDFRV 149

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D++VG+G  A ++ + L RFT++ ATTR GLL  PL+DRFG    L+FY  ++L+ ++ R
Sbjct: 150 DVVVGKGAGASAIPLTLPRFTVVGATTRAGLLPAPLRDRFGFTGHLDFYSSDELERVLTR 209

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A L G A+  +AA E+A RSRGTPRIA RLLRRVRD+AEV    ++    A AAL    
Sbjct: 210 SAGLLGSALQPQAASELASRSRGTPRIANRLLRRVRDWAEVRGDGSMDLRAARAALEVYE 269

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D +G D+LD   L  +   F GGPVG+ T++  + E  + +E + EP+++++G + RTP
Sbjct: 270 VDDLGLDRLDRAVLRALCTRFAGGPVGLTTLAVTVGEEPETVETVAEPFLVREGLMGRTP 329

Query: 315 RGRLLMPIAWQHLGIDIP 332
           RGR+  P AW HLG+  P
Sbjct: 330 RGRVATPAAWAHLGLTPP 347


>gi|330836554|ref|YP_004411195.1| Holliday junction DNA helicase subunit RuvB [Spirochaeta coccoides
           DSM 17374]
 gi|329748457|gb|AEC01813.1| Holliday junction DNA helicase subunit RuvB [Spirochaeta coccoides
           DSM 17374]
          Length = 356

 Score =  307 bits (787), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 151/316 (47%), Positives = 212/316 (67%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           Q D   +LLRP+ L++F GQ +   NL VFI AA+ R EALDHV  +GPPGLGKTTLA +
Sbjct: 27  QGDETENLLRPQRLKDFQGQQKLKDNLSVFITAARERNEALDHVFLIGPPGLGKTTLATI 86

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +A E+    R TS P + K  DLA +LTN+ +  V FIDEIHRL   +EE+LY AMED++
Sbjct: 87  IANEMNAEIRMTSAPALDKPKDLAGILTNISENSVFFIDEIHRLKPALEEMLYIAMEDYE 146

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           +D ++G+GP+AR+++I L RFTLI ATT+ G +++PL  RFGI   ++FY   +L  I+ 
Sbjct: 147 IDWVIGQGPAARTMRIPLPRFTLIGATTKAGQVSSPLHSRFGITCHIDFYNENELSGIIL 206

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R + + G  +T +A   +A  SRGTPRIA RLLRR+RDFA+V     +  +I    + RL
Sbjct: 207 RSSGIVGTEITPDAVSLLARCSRGTPRIANRLLRRLRDFADVIGTGIVDVDIVHEGMKRL 266

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            ID  G D+ D   L  I   + GGPVG +T+S  + E  +++ED  EPY+IQ+G+++RT
Sbjct: 267 GIDLNGLDEQDRNILRTIIEFYDGGPVGADTLSISVGEASESLEDFYEPYLIQKGYLKRT 326

Query: 314 PRGRLLMPIAWQHLGI 329
           PRGR++   A++ LGI
Sbjct: 327 PRGRMVTRKAYELLGI 342


>gi|126660419|ref|ZP_01731529.1| Holliday junction DNA helicase B [Cyanothece sp. CCY0110]
 gi|126618285|gb|EAZ89044.1| Holliday junction DNA helicase B [Cyanothece sp. CCY0110]
          Length = 367

 Score =  307 bits (787), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 153/317 (48%), Positives = 217/317 (68%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           N   ++++   +RP  LE++ GQ    S L + I+AA  R + LDH+L  GPPGLGKTT+
Sbjct: 48  NKDSDESNGQNIRPHRLEDYIGQESLKSVLNIGIKAALGRQDPLDHLLLYGPPGLGKTTM 107

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           + ++A E+GVN + T+ P + +  D+  +L NL+  DVLFIDEIHRL+ + EE+LYPAME
Sbjct: 108 SLILAEEMGVNCKITAAPALERPRDITGILVNLKPGDVLFIDEIHRLNRLTEELLYPAME 167

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           D++LD+ +G+G +AR+  I L RFTL+ ATT+VG LT+PL+DRFG+  RL FYE E+L  
Sbjct: 168 DYRLDITIGKGQAARTRSIPLPRFTLVGATTKVGSLTSPLRDRFGLIERLRFYEPEELAL 227

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           I++R AK+  +++T   A EIA RSRGTPRIA RLLRRVRD+  V   ++IT  +A  +L
Sbjct: 228 IIERTAKILEVSITQPGAMEIARRSRGTPRIANRLLRRVRDYQVVHKHQSITEGLAAESL 287

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
               +D MG D  D   L  +  NF GGPVG+E+++A   E    IED+ EPY++Q GF+
Sbjct: 288 DFYQVDPMGLDWTDRMILETMINNFNGGPVGLESVAASTGEDAKTIEDVYEPYLLQIGFL 347

Query: 311 QRTPRGRLLMPIAWQHL 327
            RT RGR++  +A +HL
Sbjct: 348 NRTHRGRMVTELAREHL 364


>gi|88808206|ref|ZP_01123717.1| Holliday junction DNA helicase RuvB [Synechococcus sp. WH 7805]
 gi|88788245|gb|EAR19401.1| Holliday junction DNA helicase RuvB [Synechococcus sp. WH 7805]
          Length = 361

 Score =  307 bits (787), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 162/322 (50%), Positives = 218/322 (67%), Gaps = 5/322 (1%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           L+R   +ED+    LRP+ L ++ GQ E    L + ++AA  R EALDHVL  GPPGLGK
Sbjct: 35  LARAGVKEDS----LRPKRLADYIGQRELKQVLGIAVQAAIGRGEALDHVLLYGPPGLGK 90

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127
           TT+A V+A ELGV  R TS P + +  D+  LL NL+ +D+LFIDEIHRLS + EE+LYP
Sbjct: 91  TTMAMVLAEELGVTCRITSAPALERPRDIVGLLVNLQPKDLLFIDEIHRLSRVAEELLYP 150

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           AMED +LDL VG+G +AR+  ++L  FTL+ ATTR G L++PL+DRFG+  RL FY +ED
Sbjct: 151 AMEDRRLDLTVGKGSTARTRALDLPPFTLVGATTRAGALSSPLRDRFGLIQRLEFYGLED 210

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV-AHAKTITREIA 246
           L+ IV+R A L  L +++ A  EIA R RGTPRIA RLLRRVRD A V A    I + + 
Sbjct: 211 LQAIVERAAGLLNLELSEAACTEIARRCRGTPRIANRLLRRVRDVACVRACEGCIDQHLV 270

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           D AL    +D  G D  D R + ++ ++ GGGP G++T++A L E    +E ++EPY++Q
Sbjct: 271 DEALTLHRVDGRGLDASDRRLMELLLQSHGGGPAGLDTLAAALGEDPSTLESVVEPYLLQ 330

Query: 307 QGFIQRTPRGRLLMPIAWQHLG 328
            GF+QRTPRGR++      HLG
Sbjct: 331 LGFLQRTPRGRVVTAAGRGHLG 352


>gi|294628362|ref|ZP_06706922.1| Holliday junction DNA helicase RuvB [Streptomyces sp. e14]
 gi|292831695|gb|EFF90044.1| Holliday junction DNA helicase RuvB [Streptomyces sp. e14]
          Length = 356

 Score =  307 bits (787), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 157/311 (50%), Positives = 213/311 (68%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L EF GQ +    L + + AA+AR    DHVL  G PGLGKTTL+ ++A E+G  
Sbjct: 31  LRPKDLGEFIGQEKVREQLDLVLRAARARGATADHVLLSGAPGLGKTTLSMIIAAEMGAP 90

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGP I  AGDLAA+L++L++ +VLF+DEIHR+S   EE+LY AMEDF++D++VG+G
Sbjct: 91  IRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDVIVGKG 150

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P A ++ + L  FTL+ ATTR GLL  PL+DRFG    + FYE  +L+ +V R A L  +
Sbjct: 151 PGATAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTAHMEFYEPAELERVVHRSASLLDV 210

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +    A EIA RSRGTPRIA RLLRRVRD+A+V     ITREIA AAL    +D  G D
Sbjct: 211 EIDTAGAAEIAGRSRGTPRIANRLLRRVRDYAQVKADGVITREIAAAALAVYEVDPRGLD 270

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           +LD   L  + + FGGGPVG+ T++  + E R+ +E++ EP+++++G + RTPRGR+  P
Sbjct: 271 RLDRAVLQALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPFLVREGLLARTPRGRVATP 330

Query: 322 IAWQHLGIDIP 332
            AW HLG+  P
Sbjct: 331 AAWAHLGLTPP 341


>gi|298346871|ref|YP_003719558.1| crossover junction endoribonuclease subunit B [Mobiluncus curtisii
           ATCC 43063]
 gi|304389424|ref|ZP_07371387.1| crossover junction ATP-dependent DNA helicase RuvB [Mobiluncus
           curtisii subsp. curtisii ATCC 35241]
 gi|315656671|ref|ZP_07909558.1| crossover junction ATP-dependent DNA helicase RuvB [Mobiluncus
           curtisii subsp. holmesii ATCC 35242]
 gi|298236932|gb|ADI68064.1| crossover junction endoribonuclease subunit B [Mobiluncus curtisii
           ATCC 43063]
 gi|304327234|gb|EFL94469.1| crossover junction ATP-dependent DNA helicase RuvB [Mobiluncus
           curtisii subsp. curtisii ATCC 35241]
 gi|315492626|gb|EFU82230.1| crossover junction ATP-dependent DNA helicase RuvB [Mobiluncus
           curtisii subsp. holmesii ATCC 35242]
          Length = 345

 Score =  307 bits (787), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 157/311 (50%), Positives = 211/311 (67%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+TL +F GQ    + L++ + AAK R EA DHVL  GPPGLGKTTLA ++A E+  +
Sbjct: 29  LRPKTLGDFIGQETVKTQLQLVLSAAKERGEAADHVLLAGPPGLGKTTLAMIIAAEMSSS 88

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGP I  AGDLAA+L++L++ DVLFIDEIHRL+   EE+LY AMEDF++D++VG+G
Sbjct: 89  LRLTSGPAIGHAGDLAAILSSLQEDDVLFIDEIHRLARPAEEMLYLAMEDFRVDVVVGKG 148

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P A S+ + L  FTL+ ATTR GLL  PL+DRFG    L  Y+  DL  IV+R A L G 
Sbjct: 149 PGATSIPLTLPPFTLVGATTRAGLLPAPLRDRFGFTAHLEPYQPPDLALIVKRSASLLGS 208

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T++AA EIA RSRGTPR+A RLLRRV DFA V        E A  AL    +D++G D
Sbjct: 209 EITEDAASEIARRSRGTPRVANRLLRRVIDFALVHGHPRCDLESARRALELFEVDELGLD 268

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           +LD   L  +   F GGPVG+ T++  + E  + IE+++EP+++++G + RT RGR + P
Sbjct: 269 RLDRSVLRAVIERFAGGPVGLHTLAVSVGEEPETIEEVVEPFLVREGLLIRTNRGRAITP 328

Query: 322 IAWQHLGIDIP 332
              +HLG+  P
Sbjct: 329 KGCEHLGVTPP 339


>gi|23465307|ref|NP_695910.1| Holliday junction DNA helicase RuvB [Bifidobacterium longum
           NCC2705]
 gi|227547257|ref|ZP_03977306.1| Holliday junction DNA helicase B [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|44888505|sp|Q8G6B7|RUVB_BIFLO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|23325945|gb|AAN24546.1| holliday junction DNA helicase RuvB [Bifidobacterium longum
           NCC2705]
 gi|227212216|gb|EEI80112.1| Holliday junction DNA helicase B [Bifidobacterium longum subsp.
           infantis ATCC 55813]
          Length = 354

 Score =  307 bits (786), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 156/321 (48%), Positives = 215/321 (66%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           S+ +  E      LRP  L  F GQ    + L++F++AA+ R    DH+L  GPPGLGKT
Sbjct: 24  SQPIGNEPVSDEELRPHVLGGFIGQPRLKAQLQLFLDAARKRDVPPDHILLAGPPGLGKT 83

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           TLA +VA EL V  R TSGP +  AGDLA++L++L+  +VLFIDEIHRL    EE+LY A
Sbjct: 84  TLAMIVANELEVPIRVTSGPAVQHAGDLASILSSLDVGEVLFIDEIHRLPRAAEELLYIA 143

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           MEDF++D+MVG+GP A S+ + L RFT+I ATTR G+L +PL+ RFG    L+FY  E+L
Sbjct: 144 MEDFRVDVMVGKGPGASSIPLTLPRFTVIGATTREGMLPSPLRARFGFTAHLDFYPHEEL 203

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           + +++R A + G+ +   +A E+A+RSRGTPRIA RLLRRVRD+A V     +  +    
Sbjct: 204 EKLIERSANVLGVNLDTGSAHELALRSRGTPRIANRLLRRVRDWAIVHDLIVVRPDDVKE 263

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL    ID  G D+LD+  L  I RNF GGPVG+  ++A + E  + +E + EPY++++G
Sbjct: 264 ALALYQIDSEGLDRLDIAVLNAIVRNFNGGPVGLNNLAAMVGEESETVETVCEPYLVREG 323

Query: 309 FIQRTPRGRLLMPIAWQHLGI 329
           F+ RTP+GR+    AWQHLGI
Sbjct: 324 FMIRTPKGRVATEKAWQHLGI 344


>gi|308177526|ref|YP_003916932.1| Holliday junction ATP-dependent DNA helicase RuvB [Arthrobacter
           arilaitensis Re117]
 gi|307744989|emb|CBT75961.1| Holliday junction ATP-dependent DNA helicase RuvB [Arthrobacter
           arilaitensis Re117]
          Length = 349

 Score =  307 bits (786), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 161/333 (48%), Positives = 221/333 (66%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M D  GL S     E+  I + LRPR L++F GQ      L + +EAAK R    DHVL 
Sbjct: 1   MNDSTGLTSAGSEPEERVIEAALRPRNLDDFVGQSRVRQQLSLVLEAAKIRERTADHVLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTL+ ++A E+    R +SGP I  AGDLAA+L++L + +VLF+DEIHR+S 
Sbjct: 61  SGPPGLGKTTLSMIIAAEMNAPLRISSGPAIQHAGDLAAILSSLSEGEVLFLDEIHRMSR 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
             EE+LY AMEDF++D++VG+G  A ++ + L  FTL+ ATTR GLL  PL+DRFG    
Sbjct: 121 PAEEMLYMAMEDFRVDIIVGKGAGATAIPLELPPFTLVGATTRAGLLPGPLRDRFGFTGH 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY +++L+ +++R A +  L+VT  A  EIA RSRGTPRIA RLLRRVRD+A V   +
Sbjct: 181 LEFYAVKELELVLRRSAMMLDLSVTSAAFTEIAGRSRGTPRIANRLLRRVRDWALVHKLE 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  + A AAL    +D  G D+LD   L  +   FGGGPVG+ T++  + E  + +E +
Sbjct: 241 EIDAKAAAAALDMYEVDARGLDRLDRGVLEALCTKFGGGPVGLSTLAIAVGEETETVETV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
            EPY++++G + RTPRGR+ MP AW+HLG+ +P
Sbjct: 301 AEPYLVREGLMGRTPRGRIAMPGAWEHLGLAMP 333


>gi|167912492|ref|ZP_02499583.1| Holliday junction DNA helicase B [Burkholderia pseudomallei 112]
          Length = 272

 Score =  307 bits (786), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 155/255 (60%), Positives = 193/255 (75%)

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           +GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+Q+D+M
Sbjct: 1   MGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDYQIDIM 60

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
           +GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY+ E L  IV+R A 
Sbjct: 61  IGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYDAEQLSRIVRRSAA 120

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257
           L    +    A EIA RSRGTPRIA RLLRRVRD+AEV     IT  +ADAAL  L +D 
Sbjct: 121 LLNAQIDPAGALEIAKRSRGTPRIANRLLRRVRDYAEVKADGNITAAVADAALAMLDVDP 180

Query: 258 MGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317
           +GFD +D + L  I   F GGPVG++ ++A + E RD IED++EPY+IQQGF+QRTPRGR
Sbjct: 181 VGFDLMDRKLLEAILHKFDGGPVGVDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTPRGR 240

Query: 318 LLMPIAWQHLGIDIP 332
           +   + ++H G+  P
Sbjct: 241 VATLLTYRHFGLSAP 255


>gi|297559815|ref|YP_003678789.1| Holliday junction DNA helicase RuvB [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296844263|gb|ADH66283.1| Holliday junction DNA helicase RuvB [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 382

 Score =  306 bits (785), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 150/308 (48%), Positives = 216/308 (70%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPR L+EF GQ      L + + +AK R  A DH+L  G PGLGKTTLA ++A E+G  
Sbjct: 40  LRPRALDEFVGQERVREQLSLVLHSAKRRNRAPDHILMSGGPGLGKTTLAMIIAAEMGAP 99

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGP I ++GDLAA+L+ L++ +VLF+DEIHR++   EE+LY AMEDF++D++VG+G
Sbjct: 100 LRITSGPAIERSGDLAAVLSTLQEGEVLFLDEIHRMARPAEEMLYVAMEDFRVDVVVGKG 159

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P A ++ ++++ FTL+ ATTR G+L  PL+DRFG    ++FY  ++L+ I+QR A L G 
Sbjct: 160 PGATAIPLDIAPFTLVGATTRAGMLPAPLRDRFGFTAHMDFYTPQELELILQRSAGLLGA 219

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  +AA EIA RSRGTPRIA RLLRRVRD+AEV     ++ + A AAL    +D++G D
Sbjct: 220 PLDADAAVEIAGRSRGTPRIANRLLRRVRDYAEVRGNGRLSLDTARAALDLYEVDELGMD 279

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           +LD   L ++ R F GGPVG+ T++  + E  + +E + EP++++ GF+ RTPRGR+  P
Sbjct: 280 RLDRAILDVLMRRFRGGPVGLSTLAVSVGEEAETVETVAEPFLVRSGFLARTPRGRVATP 339

Query: 322 IAWQHLGI 329
            AW H+G+
Sbjct: 340 QAWAHMGL 347


>gi|149196354|ref|ZP_01873409.1| Holliday junction DNA helicase B [Lentisphaera araneosa HTCC2155]
 gi|149140615|gb|EDM29013.1| Holliday junction DNA helicase B [Lentisphaera araneosa HTCC2155]
          Length = 341

 Score =  306 bits (784), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 156/326 (47%), Positives = 216/326 (66%), Gaps = 3/326 (0%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           E  L +   + D   ++LRP+T EEF GQ +    L +F+EAAK R EAL H +  GPPG
Sbjct: 7   ESTLKKETGEND---NILRPKTFEEFPGQDQVKERLSIFVEAAKMRDEALGHFILSGPPG 63

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLA +VA E G   +++SGPV+ K GDLA LLT+L D D+LFIDEIHRL I +EE 
Sbjct: 64  LGKTTLAYIVANERGKGIKTSSGPVLEKPGDLAGLLTSLSDGDILFIDEIHRLPIAIEEY 123

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LY AMEDF +D+M+ +G  ARSV++N+ +FTL+ ATTR+GL + PL+ R     RL +Y 
Sbjct: 124 LYSAMEDFFIDIMIDQGVGARSVRLNIPKFTLVGATTRLGLCSAPLRSRCQHVHRLEYYS 183

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            E+L  IV+R + L    + ++A+ E+A RSRGTPRIA  LL  VRD+A+V     +T +
Sbjct: 184 DEELGRIVKRSSDLINCEMDEKASHEVAGRSRGTPRIANNLLHWVRDYAQVKADGFVTWD 243

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +A+ AL  L ID  G D++D + L  IA NF  GPVGI+ I+  + E    +ED+ EP++
Sbjct: 244 LANKALNMLNIDSNGLDEMDKKILNTIAYNFDCGPVGIKNIAVSVGEEVGTLEDVYEPFL 303

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGID 330
           IQ+G++ RT  GR++       LGI+
Sbjct: 304 IQEGYLVRTQTGRVISQKTKNMLGIN 329


>gi|239621475|ref|ZP_04664506.1| holliday junction ATP-dependent DNA helicase ruvB [Bifidobacterium
           longum subsp. infantis CCUG 52486]
 gi|239515936|gb|EEQ55803.1| holliday junction ATP-dependent DNA helicase ruvB [Bifidobacterium
           longum subsp. infantis CCUG 52486]
          Length = 354

 Score =  306 bits (784), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 156/321 (48%), Positives = 214/321 (66%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           S  +  E      LRP  L  F GQ    + L++F++AA+ R    DH+L  GPPGLGKT
Sbjct: 24  SSPIGNEPVSDEELRPHVLGGFIGQPRLKAQLQLFLDAARKRDVPPDHILLAGPPGLGKT 83

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           TLA +VA EL V  R TSGP +  AGDLA++L++L+  +VLFIDEIHRL    EE+LY A
Sbjct: 84  TLAMIVANELEVPIRVTSGPAVQHAGDLASILSSLDVGEVLFIDEIHRLPRAAEELLYIA 143

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           MEDF++D+MVG+GP A S+ + L RFT+I ATTR G+L +PL+ RFG    L+FY  E+L
Sbjct: 144 MEDFRVDVMVGKGPGASSIPLTLPRFTVIGATTREGMLPSPLRARFGFTAHLDFYPHEEL 203

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           + +++R A + G+ +   +A E+A+RSRGTPRIA RLLRRVRD+A V     +  +    
Sbjct: 204 EKLIERSANVLGVNLDTGSAHELALRSRGTPRIANRLLRRVRDWAIVHDLIVVRPDDVKE 263

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL    ID  G D+LD+  L  I RNF GGPVG+  ++A + E  + +E + EPY++++G
Sbjct: 264 ALALYQIDSEGLDRLDIAVLNAIVRNFNGGPVGLNNLAAMVGEESETVETVCEPYLVREG 323

Query: 309 FIQRTPRGRLLMPIAWQHLGI 329
           F+ RTP+GR+    AWQHLGI
Sbjct: 324 FMIRTPKGRVATEKAWQHLGI 344


>gi|325109079|ref|YP_004270147.1| Holliday junction DNA helicase subunit RuvB [Planctomyces
           brasiliensis DSM 5305]
 gi|324969347|gb|ADY60125.1| Holliday junction DNA helicase subunit RuvB [Planctomyces
           brasiliensis DSM 5305]
          Length = 351

 Score =  306 bits (784), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 149/307 (48%), Positives = 208/307 (67%), Gaps = 1/307 (0%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFR 83
           P+ L E  GQ +    +++ + AA++R ++L H+L  GPPGLGKTTLA  + +ELG +F+
Sbjct: 39  PQALSEIVGQQKVVERVQIMLTAAQSRGDSLGHLLLEGPPGLGKTTLAMALPKELGSDFQ 98

Query: 84  STSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPS 143
            TSGP +    DL   LT   +R VLFIDEIHRL   VEE +YPAMEDF++D+ +G+G +
Sbjct: 99  ITSGPTLKAPKDLLPYLTRATERSVLFIDEIHRLPPAVEEFIYPAMEDFRVDIALGDGLN 158

Query: 144 ARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAV 203
           AR+V + L  FT++ ATTR G+LT PL+DRF      +FYE  +L T++QR A     ++
Sbjct: 159 ARTVNMTLKPFTIVGATTRSGMLTAPLRDRFVNRAHFDFYETHELATLLQRNATKLRTSL 218

Query: 204 TDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH-AKTITREIADAALLRLAIDKMGFDQ 262
             +AA EI MRSRGTPR A  LLR +RDFA+V H +  I+ EIA+AA+  + ID +G ++
Sbjct: 219 APDAAEEIGMRSRGTPRKANNLLRWIRDFAQVQHKSNDISLEIANAAMAMIEIDAIGLEE 278

Query: 263 LDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPI 322
           +D RYL  +   F GGP G+  I   ++ P D +ED IEP++++QGFIQRTPRGR++ P 
Sbjct: 279 MDRRYLMTLISVFSGGPAGLNAIGHSMNVPPDTLEDEIEPFLLRQGFIQRTPRGRMVTPA 338

Query: 323 AWQHLGI 329
           AW HL I
Sbjct: 339 AWDHLNI 345


>gi|183219942|ref|YP_001837938.1| Holliday junction DNA helicase RuvB [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|189910066|ref|YP_001961621.1| Holliday junction DNA helicase RuvB [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167774742|gb|ABZ93043.1| Holliday junction DNA helicase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167778364|gb|ABZ96662.1| Holliday junction DNA helicase RuvB [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
          Length = 341

 Score =  306 bits (784), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 152/308 (49%), Positives = 208/308 (67%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP  L EF GQ E  +NL V++EAA+ R   LDHVL  GPPGLGKTTLA ++A EL V 
Sbjct: 17  LRPTKLSEFIGQKEVLANLSVYVEAARKRKSPLDHVLISGPPGLGKTTLANIIANELAVA 76

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           F  TS P I+K  DL   LT L+  +VLFIDEIH      EE+LYPAME+F +DL+VGEG
Sbjct: 77  FTPTSAPAISKGADLVRFLTLLKTNEVLFIDEIHGFIKKQEELLYPAMENFFVDLVVGEG 136

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            +A +++I L  FTL+ ATTR GL+++PL+ RFGI ++L+FY  E+++ IV R AKL G+
Sbjct: 137 VTANALQIQLQPFTLVGATTRSGLVSDPLKSRFGIHLKLDFYTDEEMQIIVDRSAKLLGV 196

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +    A E+  RSR TPRIA  LL+RVRDFAEV +  +++ +    A  R+ +D +G D
Sbjct: 197 ELGQGVAMEVGKRSRKTPRIANHLLKRVRDFAEVNNETSVSLKTCRYAFDRMGVDHLGLD 256

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L ++   +GGGPVGI+ I+  L E    IED  EP++++ G I RTP+GR+   
Sbjct: 257 AVDRQILDILISRYGGGPVGIKPIAVVLGEEERTIEDTYEPFLVRVGLIDRTPQGRVATK 316

Query: 322 IAWQHLGI 329
            A++HLG+
Sbjct: 317 KAYEHLGL 324


>gi|290961822|ref|YP_003493004.1| Holliday junction DNA helicase [Streptomyces scabiei 87.22]
 gi|260651348|emb|CBG74470.1| holliday junction DNA helicase [Streptomyces scabiei 87.22]
          Length = 356

 Score =  306 bits (783), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 159/329 (48%), Positives = 222/329 (67%), Gaps = 1/329 (0%)

Query: 5   EGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E L+     +ED  + + LRP+ L EF GQ +    L + + AA+AR    DHVL  G P
Sbjct: 13  ERLVGSVADREDQAVEAALRPKDLGEFIGQEKVREQLDLVLRAARARGATADHVLLSGAP 72

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTL+ ++A E+G   R TSGP I  AGDLAA+L++L++ +VLF+DEIHR+S   EE
Sbjct: 73  GLGKTTLSMIIAAEMGAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEE 132

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LY AMEDF++D++VG+GP A ++ + L  FTL+ ATTR GLL  PL+DRFG    + FY
Sbjct: 133 MLYMAMEDFRVDVIVGKGPGATAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTAHMEFY 192

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           E  +L+ ++ R A L  + +  + A EIA RSRGTPRIA RLLRRVRD+A+V     ITR
Sbjct: 193 EPAELERVIHRSANLLDVEIDTDGAAEIAGRSRGTPRIANRLLRRVRDYAQVKADGFITR 252

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           +IA AAL    +D  G D+LD   L  + + FGGGPVG+ T++  + E R+ +E++ EP+
Sbjct: 253 DIAGAALAVYEVDARGLDRLDRGVLEALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPF 312

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++++G + RTPRGR+  P AW HLG+  P
Sbjct: 313 LVREGLLARTPRGRVATPAAWAHLGLTPP 341


>gi|113954123|ref|YP_729361.1| Holliday junction DNA helicase RuvB [Synechococcus sp. CC9311]
 gi|122945871|sp|Q0IDW1|RUVB_SYNS3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|113881474|gb|ABI46432.1| Holliday junction DNA helicase RuvB [Synechococcus sp. CC9311]
          Length = 359

 Score =  306 bits (783), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 163/319 (51%), Positives = 215/319 (67%), Gaps = 5/319 (1%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           + ++ED     LRPR L+++ GQ E    L + I+AA  R EALDHVL  GPPGLGKTT+
Sbjct: 36  SATKEDG----LRPRRLDDYIGQRELKQVLGIAIQAAMGRGEALDHVLLYGPPGLGKTTM 91

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           A V+A ELGV  R TS P + +  D+  LL NL+ ++VLFIDEIHRL+ + EE+LYPAME
Sbjct: 92  AMVLAEELGVTCRITSAPALERPRDIVGLLVNLQPKEVLFIDEIHRLTRVAEELLYPAME 151

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           D +LDL VG+G +AR+  + L  FTL+ ATTR G L++PL+DRFG+  RL FY  EDL+ 
Sbjct: 152 DRRLDLTVGKGSTARTRALELPPFTLVGATTRAGALSSPLRDRFGLIQRLEFYGQEDLQA 211

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH-AKTITREIADAA 249
           IV R A L  L ++ EA  EIA R RGTPRIA RLLRRVRD A V   +  I  ++ D A
Sbjct: 212 IVMRAAGLLTLQLSPEACAEIARRCRGTPRIANRLLRRVRDVACVREVSGCIDVKLVDEA 271

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           L    +D  G D  D R L ++ ++ GGGPVG++T++A L E    +E ++EPY++Q GF
Sbjct: 272 LTLHRVDGKGLDASDRRLLELLLQSHGGGPVGLDTLAAALGEDPTTLEAVVEPYLLQLGF 331

Query: 310 IQRTPRGRLLMPIAWQHLG 328
           +QRTPRGR++      HLG
Sbjct: 332 LQRTPRGRVVTAAGRGHLG 350


>gi|170781149|ref|YP_001709481.1| Holliday junction DNA helicase RuvB [Clavibacter michiganensis
           subsp. sepedonicus]
 gi|169155717|emb|CAQ00838.1| holliday junction dna helicase RuvB [Clavibacter michiganensis
           subsp. sepedonicus]
          Length = 359

 Score =  306 bits (783), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 156/331 (47%), Positives = 217/331 (65%), Gaps = 4/331 (1%)

Query: 5   EGLLSRNVSQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
            G  S  V + DA+++    LRPR+L EF GQV+    L++ + AA  +  + DH+L  G
Sbjct: 6   HGDASSPVPESDAELAFEGALRPRSLSEFVGQVKVRGQLELLLTAAAMQNRSPDHILLAG 65

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA +VA E     R TSGP I  AGDLAA+L+ L   ++LF+DEIHR++   
Sbjct: 66  PPGLGKTTLAMIVAEESRRPLRLTSGPAIQHAGDLAAVLSALVPGEILFVDEIHRMARSA 125

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMED+++D+MVG+G  A S+ + LS FTL+ ATTR G+L +PL+DRFG    L 
Sbjct: 126 EEMLYLAMEDYRIDIMVGKGAGATSIPLELSPFTLVGATTRSGMLPSPLRDRFGFTAHLE 185

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FYE  +L+ +++R A++  L +  EA  EIA R RGTPRIA RLLRRVRD+A V H    
Sbjct: 186 FYETHELEQVIERAARMLHLEIEHEAVAEIAGRCRGTPRIANRLLRRVRDYALV-HGTEA 244

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
             E   AAL    +D +G D+LD   +  I   FGGGPVG+ T++  + E  + IE ++E
Sbjct: 245 GLESVRAALDLYDVDPLGLDRLDRAVMRGILTRFGGGPVGLNTLAVSVGEEAETIESVVE 304

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           P++++ G + RTPRGR+  P AW+H G++ P
Sbjct: 305 PFLVRIGLVTRTPRGRVATPAAWEHFGLEAP 335


>gi|254443663|ref|ZP_05057139.1| Holliday junction DNA helicase RuvB [Verrucomicrobiae bacterium
           DG1235]
 gi|198257971|gb|EDY82279.1| Holliday junction DNA helicase RuvB [Verrucomicrobiae bacterium
           DG1235]
          Length = 339

 Score =  305 bits (782), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 152/311 (48%), Positives = 212/311 (68%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           SLLRP + +EF GQ +    LK+   AA+ R E L+H+L  GPPGLGKT+L+ ++  E+G
Sbjct: 26  SLLRPPSFDEFVGQSKTVERLKIMSGAARKRGEPLNHILLSGPPGLGKTSLSFILGAEMG 85

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
            N R TSGPV+ KAGDLA +LTNLE+ D+LFIDEIHR+   VEE LY AMED+ +D+M+ 
Sbjct: 86  RNVRITSGPVVEKAGDLAGMLTNLEEGDILFIDEIHRIPKTVEEYLYSAMEDYCIDIMID 145

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199
           +GP+ARSV++N+ RFTL+ ATTR GLLT PL+ RF +  RL++Y  EDL  IV R  KL 
Sbjct: 146 QGPNARSVRLNIPRFTLVGATTRNGLLTAPLRSRFTLQTRLDYYGPEDLLKIVTRTCKLL 205

Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259
            + +  +   EIA R+RGTPRIA  L+  VRD+AE     TIT+  A AAL  L ID +G
Sbjct: 206 NVPLDTDGGLEIARRARGTPRIANNLVNFVRDYAEEKGNGTITKATAQAALELLEIDALG 265

Query: 260 FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLL 319
            D++D R L ++A  +   PVG+ T++  + E    +E++ EP++IQ G IQRT +GR++
Sbjct: 266 LDEMDKRLLRVMATTYNSRPVGLNTLAVAVGEESHTLEEVHEPFLIQSGLIQRTAQGRII 325

Query: 320 MPIAWQHLGID 330
                + +G++
Sbjct: 326 TGDGLRAIGLE 336


>gi|329938964|ref|ZP_08288338.1| Holliday junction DNA helicase [Streptomyces griseoaurantiacus
           M045]
 gi|329301849|gb|EGG45742.1| Holliday junction DNA helicase [Streptomyces griseoaurantiacus
           M045]
          Length = 357

 Score =  305 bits (780), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 159/329 (48%), Positives = 221/329 (67%), Gaps = 1/329 (0%)

Query: 5   EGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E L+     +ED  + + LRP+ L EF GQ +    L + + AA+AR    DHVL  G P
Sbjct: 14  ERLVGSVADREDQAVEAALRPKDLGEFIGQEKVREQLDLVLRAARARGATADHVLLSGAP 73

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTL+ ++A E+G   R TSGP I  AGDLAA+L++L++ +VLF+DEIHR+S   EE
Sbjct: 74  GLGKTTLSMIIAAEMGAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEE 133

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LY AMEDF++D++VG+GP A ++ + L  FTL+ ATTR GLL  PL+DRFG    + FY
Sbjct: 134 MLYMAMEDFRVDVVVGKGPGATAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTAHMEFY 193

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           E  +L+ +V R A L  + +  + A EIA RSRGTPRIA RLLRRVRD+A+V     I R
Sbjct: 194 EPTELERVVHRSASLLDVEIDTDGAAEIAGRSRGTPRIANRLLRRVRDYAQVKADGIIDR 253

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           +IA AAL    +D  G D+LD   L  + + FGGGPVG+ T++  + E R+ +E++ EP+
Sbjct: 254 DIAAAALKVYEVDARGLDRLDRAVLQALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPF 313

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++++G + RTPRGR+  P AW HLG+  P
Sbjct: 314 LVREGLLARTPRGRVATPAAWAHLGLTPP 342


>gi|167948215|ref|ZP_02535289.1| holliday junction DNA helicase RuvB [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 285

 Score =  305 bits (780), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 159/271 (58%), Positives = 193/271 (71%), Gaps = 5/271 (1%)

Query: 13  SQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           S +DA I   +RP  L ++ GQ   C  +++FIEAA+ R EALDHVL  GPPGLGKTTLA
Sbjct: 14  SGDDAVIDRAIRPTRLGDYVGQPSVCEQMEIFIEAARRREEALDHVLIFGPPGLGKTTLA 73

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            ++A E+GVN R TSGPV+ K GDLAALLTNLE  DVLF+DEIHRLS +VEE+LYPA+ED
Sbjct: 74  HIIANEMGVNLRQTSGPVLEKPGDLAALLTNLEPHDVLFVDEIHRLSPVVEEVLYPALED 133

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           FQLD+M+GEGP+ARS+K++L  FTL+ ATTR GLLT+PL+DRFGI  RL FY   DL  I
Sbjct: 134 FQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGLLTSPLRDRFGIVQRLEFYSAADLAQI 193

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           V R A +  +      A EIA RSRGTPRIA RLLRRVRD+A+V     +  E+AD AL 
Sbjct: 194 VARSAGILNIGSDAAGAMEIARRSRGTPRIANRLLRRVRDYAQVKGDGRVGAELADRALR 253

Query: 252 RLAIDKMGFDQLDLRYL----TMIARNFGGG 278
            L +D  GFD +D R L      + R  GGG
Sbjct: 254 MLKVDGNGFDAMDRRLLLGGDRKVRRRPGGG 284


>gi|302561708|ref|ZP_07314050.1| Holliday junction DNA helicase RuvB [Streptomyces griseoflavus
           Tu4000]
 gi|302479326|gb|EFL42419.1| Holliday junction DNA helicase RuvB [Streptomyces griseoflavus
           Tu4000]
          Length = 357

 Score =  304 bits (779), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 156/311 (50%), Positives = 212/311 (68%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L EF GQ +    L + + AA+AR    DHVL  G PGLGKTTL+ ++A E+   
Sbjct: 32  LRPKDLGEFIGQEKVREQLDLVLRAARARGATADHVLLSGAPGLGKTTLSMIIAAEMEAP 91

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGP I  AGDLAA+L++L++ +VLF+DEIHR+S   EE+LY AMEDF++D++VG+G
Sbjct: 92  IRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDVIVGKG 151

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P A ++ + L  FTL+ ATTR GLL  PL+DRFG    + FYE  +L+ +V R A L  +
Sbjct: 152 PGATAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTAHMEFYEPAELQRVVHRSAHLLDV 211

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +    A EIA RSRGTPRIA RLLRRVRD+A+V     ITR IA+AAL    +D  G D
Sbjct: 212 EIDAHGAAEIAGRSRGTPRIANRLLRRVRDYAQVKADGVITRGIAEAALAVYEVDARGLD 271

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           +LD   L  + + FGGGPVG+ T+S  + E R+ +E++ EP+++++G + RTPRGR+  P
Sbjct: 272 RLDRAVLEALLKLFGGGPVGLSTLSVAVGEERETVEEVAEPFLVREGLLARTPRGRVATP 331

Query: 322 IAWQHLGIDIP 332
            AW HLG+  P
Sbjct: 332 AAWAHLGLAPP 342


>gi|257458849|ref|ZP_05623972.1| holliday junction DNA helicase RuvB [Campylobacter gracilis RM3268]
 gi|257443837|gb|EEV18957.1| holliday junction DNA helicase RuvB [Campylobacter gracilis RM3268]
          Length = 338

 Score =  304 bits (778), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 159/309 (51%), Positives = 219/309 (70%), Gaps = 1/309 (0%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           S LRP + E++ GQ +  SNL + I AAK RA+ LDHVLF GPPGLGKTTLA ++A ++G
Sbjct: 18  SSLRPSSFEDYVGQEKIKSNLAIAIAAAKKRADVLDHVLFYGPPGLGKTTLAHIIAAQMG 77

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
              + T+ P+I KAGDLAA+LTNL+  DVLFIDEIHRLS  +EE+LY AMEDF+LD+++G
Sbjct: 78  AAIKVTAAPMIEKAGDLAAILTNLQSGDVLFIDEIHRLSPAIEEVLYSAMEDFRLDIIIG 137

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199
            GP+A+++KI++  FTLI ATTR G+++ PL+DRFG+  RL FY   +L  IVQ  +   
Sbjct: 138 SGPAAQTIKIDIPHFTLIGATTRAGMISAPLRDRFGMQFRLQFYTHAELARIVQIASVKL 197

Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259
           G     +A+ EIA RSRGTPRIA RLLRR+RDFAEV     I+ + A   L  L +D+ G
Sbjct: 198 GKESAADASAEIARRSRGTPRIALRLLRRIRDFAEVRDEGAISHDRAREGLEALGVDEQG 257

Query: 260 FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLL 319
           FD++D++YL ++  +     +G+ TI+A LSE    IED+IEPY++  G+I++T +GR+ 
Sbjct: 258 FDEMDIKYLEILF-DAKHRALGLSTIAAALSEDEGTIEDVIEPYLLANGYIEKTAKGRIA 316

Query: 320 MPIAWQHLG 328
              A + LG
Sbjct: 317 TDKAREALG 325


>gi|148238521|ref|YP_001223908.1| Holliday junction DNA helicase B [Synechococcus sp. WH 7803]
 gi|166231564|sp|A5GI46|RUVB_SYNPW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|147847060|emb|CAK22611.1| Holliday junction DNA helicase [Synechococcus sp. WH 7803]
          Length = 365

 Score =  304 bits (778), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 159/313 (50%), Positives = 211/313 (67%), Gaps = 1/313 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L ++ GQ E    L + ++AA  R EALDHVL  GPPGLGKTT+A V+A ELGV 
Sbjct: 49  LRPKRLADYIGQRELKQVLGIAVQAAVGRGEALDHVLLYGPPGLGKTTMAMVLAEELGVT 108

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TS P + +  D+  LL  L+ +D+LFIDEIHRLS + EE+LYPAMED +LDL VG+G
Sbjct: 109 CRITSAPALERPRDIVGLLVTLQPKDLLFIDEIHRLSRVAEELLYPAMEDRRLDLTVGKG 168

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            +AR+  ++L  FTL+ ATTR G L++PL+DRFG+  RL FY +EDL+ IV+R A L  L
Sbjct: 169 STARTRALDLPPFTLVGATTRAGALSSPLRDRFGLIQRLEFYGLEDLQAIVERAAGLLDL 228

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV-AHAKTITREIADAALLRLAIDKMGF 260
            ++  A  EIA R RGTPRIA RLLRRVRD A V A A  I + + D AL    +D  G 
Sbjct: 229 DLSAAACTEIARRCRGTPRIANRLLRRVRDVACVRACAGRIDQALVDEALTLHRVDGRGL 288

Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320
           D  D R + ++ ++ GGGP G++T++A L E    +E ++EPY++Q GF+QRTPRGR++ 
Sbjct: 289 DASDRRLMELLLQSHGGGPAGLDTLAAALGEDPATLESVVEPYLLQLGFLQRTPRGRVVT 348

Query: 321 PIAWQHLGIDIPH 333
                HLG   P 
Sbjct: 349 AAGRGHLGWPYPQ 361


>gi|224370134|ref|YP_002604298.1| Holliday junction DNA helicase RuvB [Desulfobacterium autotrophicum
           HRM2]
 gi|259495662|sp|C0QKP4|RUVB_DESAH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|223692851|gb|ACN16134.1| RuvB [Desulfobacterium autotrophicum HRM2]
          Length = 354

 Score =  303 bits (777), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 155/315 (49%), Positives = 207/315 (65%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           + +++  LRP   E + GQ +    LK+ I+AAK R + LDHVL  GPPGLGKTT++ ++
Sbjct: 33  DSSEVVSLRPDRFESYVGQTDTVETLKIAIQAAKMRGDCLDHVLLHGPPGLGKTTISHII 92

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A E+G     TSGP + K GDL  +LTNL   D+LFIDEIHRL   VEE LYPAMEDF +
Sbjct: 93  ANEMGGTLTVTSGPALEKGGDLIGMLTNLARGDILFIDEIHRLPKTVEEFLYPAMEDFAV 152

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D +  +G  ARS +  L +F L+ ATTRVGL+++PL+DRFGI   L+FY  E+L TI++R
Sbjct: 153 DFVFDKGLHARSHRYRLKQFVLVGATTRVGLISSPLRDRFGIFRSLDFYTDEELVTIIRR 212

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A L  + + D AA E+A RSRGTPRIA RLL+RVRDF+ V  +  +T++   AAL    
Sbjct: 213 SAGLLNVVLDDGAALELARRSRGTPRIANRLLKRVRDFSMVRSSGEVTQKSVAAALSLEG 272

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           ID  G   LD  YL  I   + GGPVGIE ++A L E  D + D++EPY+++ G + RT 
Sbjct: 273 IDSKGLTVLDRNYLRTIIEFYRGGPVGIEAVAATLQEETDTLVDVVEPYLLKIGMVMRTS 332

Query: 315 RGRLLMPIAWQHLGI 329
            GR     A++HLGI
Sbjct: 333 AGRRASVGAYEHLGI 347


>gi|295396082|ref|ZP_06806265.1| crossover junction ATP-dependent DNA helicase RuvB [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294971023|gb|EFG46915.1| crossover junction ATP-dependent DNA helicase RuvB [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 356

 Score =  303 bits (776), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 149/318 (46%), Positives = 216/318 (67%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E A  + LRP+ L EF GQ +    L + ++AAKA     DHVL  GPPGLGKTTLA ++
Sbjct: 32  ERAQEAALRPKGLAEFVGQKQVREQLSLVLDAAKAGKRTPDHVLLSGPPGLGKTTLAMII 91

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A+E+G + R TSGP +  AGDLAA+L++L++ +VLFIDEIHR++   EE+LY AMEDF++
Sbjct: 92  AQEMGSHIRITSGPAVQHAGDLAAILSSLDEGEVLFIDEIHRVARAAEEMLYVAMEDFRV 151

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D++VG+GP A ++ ++L  FTL+ ATTR GLL  PL+DRFG    L+FY  +DL+ +++R
Sbjct: 152 DVIVGKGPGATAIPLDLPPFTLVGATTRSGLLPAPLRDRFGFTGHLDFYTSQDLQRVLER 211

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A + G+   +    EIA RSRGTPRIA RLLRRVRD+A+V     I    + +AL    
Sbjct: 212 SAGMLGIEADEAGLAEIARRSRGTPRIANRLLRRVRDWAQVRGDGHIDLYASRSALNVYE 271

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D  G D+LD   L+++   F GGPVG+ T++  + E  + +E++ EP+++++G + RTP
Sbjct: 272 VDDRGLDRLDRAVLSVLCERFNGGPVGLSTLAVSVGEEPETVEEVAEPFLVREGLMTRTP 331

Query: 315 RGRLLMPIAWQHLGIDIP 332
           RGR+     WQH+G+  P
Sbjct: 332 RGRIATQTGWQHIGLTPP 349


>gi|325846491|ref|ZP_08169406.1| Holliday junction DNA helicase RuvB [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325481249|gb|EGC84290.1| Holliday junction DNA helicase RuvB [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 279

 Score =  303 bits (776), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 146/273 (53%), Positives = 199/273 (72%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHR 116
           +L  GPPGLGKTTL+ ++A ELGVN R TSGP I +  DLA++LTNL+  DVLFIDEIHR
Sbjct: 1   MLLQGPPGLGKTTLSNIIANELGVNIRITSGPAIERPSDLASILTNLDKGDVLFIDEIHR 60

Query: 117 LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
           ++  VEEILYPAMEDF LD++VG+GP+A+S++I+L +FTL+ ATTR G+L+ PL+DRFG+
Sbjct: 61  INRSVEEILYPAMEDFALDIIVGKGPNAQSIRIDLEKFTLVGATTRAGMLSAPLRDRFGV 120

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
            + LN Y+ +DL  IV+R A +  + + ++ A EIA RSRGTPRIA RLL+RVRD+A V 
Sbjct: 121 LLSLNLYDTKDLTKIVKRSADILDIPIDEKGAFEIARRSRGTPRIANRLLKRVRDYAIVK 180

Query: 237 HAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAI 296
             + I  E +   L  L +D MG D +D + +  +  NF GGPVG++TI+A        I
Sbjct: 181 KDEIIDYETSCEGLELLEVDPMGLDNMDKKIVLTMHENFDGGPVGVDTIAASTGIENVTI 240

Query: 297 EDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           ED+ EPY++Q GF+ RTPRGR+L   A++H G+
Sbjct: 241 EDVYEPYLLQIGFLTRTPRGRILTKKAYEHYGL 273


>gi|325963418|ref|YP_004241324.1| Holliday junction DNA helicase subunit RuvB [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323469505|gb|ADX73190.1| Holliday junction DNA helicase subunit RuvB [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 362

 Score =  303 bits (776), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 154/319 (48%), Positives = 211/319 (66%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           +E A  + LRP+ L++F GQ      L + ++A++ R  + DHVLF GPPGLGKTTLA +
Sbjct: 14  EERAIEAALRPKNLDDFVGQHRVRKQLSLVLKASRMRGRSADHVLFSGPPGLGKTTLAMI 73

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           VA E+    R +SGP I  AGDLAA+L++L + +VLF+DEIHR+S   EE+LY AMEDF+
Sbjct: 74  VAAEMNAPLRISSGPAIQHAGDLAAILSSLSEGEVLFLDEIHRMSRPAEEMLYMAMEDFR 133

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           +D++VG+G  A ++ + L  FTL+ ATTR GLL  PL+DRFG    L FY + +L+ +++
Sbjct: 134 VDIVVGKGAGATAIPLELPPFTLVGATTRAGLLPGPLRDRFGFTGHLEFYSVPELELVLR 193

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A L  L V      EIA RSRGTPRIA RLLRRVRD+A V   + I    A AAL   
Sbjct: 194 RSAGLLDLKVNSAGFTEIAGRSRGTPRIANRLLRRVRDWALVHDIEQIDARAASAALDMY 253

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +DK G D+LD   L  +   FGGGPVG+ T++  + E  + +E + EP+++++G + RT
Sbjct: 254 EVDKKGLDRLDRAVLEALITKFGGGPVGLATLAIAVGEETETVETVAEPFLVREGLLGRT 313

Query: 314 PRGRLLMPIAWQHLGIDIP 332
           PRGR+ M  AW HLG  IP
Sbjct: 314 PRGRIAMAPAWTHLGYSIP 332


>gi|87123213|ref|ZP_01079064.1| Holliday junction DNA helicase RuvB [Synechococcus sp. RS9917]
 gi|86168933|gb|EAQ70189.1| Holliday junction DNA helicase RuvB [Synechococcus sp. RS9917]
          Length = 352

 Score =  303 bits (776), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 160/308 (51%), Positives = 211/308 (68%), Gaps = 1/308 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPR LE++ GQ E    L + ++AA  R +ALDHVL  GPPGLGKTT+A V+A ELGV+
Sbjct: 36  LRPRRLEDYIGQPELKQVLAIAVQAALGRGDALDHVLLYGPPGLGKTTMALVLAEELGVS 95

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TS P + +  D+  LL NL+  ++LFIDEIHRL+ + EE+LYPAMED +LDL VG+G
Sbjct: 96  CRITSAPALERPRDIVGLLVNLQPNELLFIDEIHRLTRVAEELLYPAMEDRRLDLTVGKG 155

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            +AR+  + L  FTL+ ATTR G L++PL+DRFG+  RL FY  EDL+ IV+R A L GL
Sbjct: 156 STARTRTLELPPFTLVGATTRAGALSSPLRDRFGLIQRLEFYGQEDLEAIVERAAGLLGL 215

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK-TITREIADAALLRLAIDKMGF 260
            +T +A  EIA R RGTPRIA RLLRRVRD A V   +  I   + D AL    +D  G 
Sbjct: 216 RLTPQACAEIAGRCRGTPRIANRLLRRVRDVACVRDVEGAIDAALVDDALRLHRVDGRGL 275

Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320
           D  D R L ++ +  GGGPVG++T++A L E    +E ++EPY++Q GF+QRTPRGR++ 
Sbjct: 276 DASDRRLLELLLQAHGGGPVGLDTLAAALGEDPTTLEAVVEPYLLQLGFLQRTPRGRVVT 335

Query: 321 PIAWQHLG 328
               +HLG
Sbjct: 336 AAGREHLG 343


>gi|302550159|ref|ZP_07302501.1| Holliday junction DNA helicase RuvB [Streptomyces viridochromogenes
           DSM 40736]
 gi|302467777|gb|EFL30870.1| Holliday junction DNA helicase RuvB [Streptomyces viridochromogenes
           DSM 40736]
          Length = 356

 Score =  303 bits (776), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 153/311 (49%), Positives = 214/311 (68%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L+EF GQ +    L + + AA+AR    DHVL  G PGLGKTTL+ ++A E+G  
Sbjct: 31  LRPKDLDEFIGQEKVREQLDLVLRAARARGATADHVLLSGAPGLGKTTLSMIIAAEMGAP 90

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGP I  AGDLAA+L++L++ +VLF+DEIHR+S   EE+LY AMEDF++D++VG+G
Sbjct: 91  IRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDVIVGKG 150

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P A ++ + L  FTL+ ATTR GLL  PL+DRFG    + FYE  +L+ ++ R A L  +
Sbjct: 151 PGATAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTAHMEFYEPAELERVIHRSANLLEV 210

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +    A EIA RSRGTPRIA RLLRRVRD+A+V     IT++IA AAL    +D+ G D
Sbjct: 211 EIEPHGAAEIAGRSRGTPRIANRLLRRVRDYAQVKADGLITQDIAAAALAVYEVDERGLD 270

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           +LD   L  + + F GGPVG+ T++  + E R+ +E++ EP+++++G + RTPRGR+  P
Sbjct: 271 RLDRAVLEALLKLFSGGPVGLSTLAVAVGEERETVEEVAEPFLVREGLLARTPRGRVATP 330

Query: 322 IAWQHLGIDIP 332
            AW HLG+  P
Sbjct: 331 AAWAHLGLTPP 341


>gi|116071674|ref|ZP_01468942.1| Holliday junction DNA helicase RuvB [Synechococcus sp. BL107]
 gi|116065297|gb|EAU71055.1| Holliday junction DNA helicase RuvB [Synechococcus sp. BL107]
          Length = 347

 Score =  303 bits (776), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 162/307 (52%), Positives = 206/307 (67%), Gaps = 1/307 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E+ GQ E    L + +EAA  R EALDHVL  GPPGLGKTT+A V+A ELGVN
Sbjct: 37  LRPKRLAEYIGQSELKQVLGIAVEAALGRGEALDHVLLYGPPGLGKTTMALVLAEELGVN 96

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TS P + +  D+  LL NL+ RD+LFIDEIHRLS + EE+LYPAMED +LDL VG+G
Sbjct: 97  CRITSAPALERPRDIVGLLVNLQPRDLLFIDEIHRLSRVAEELLYPAMEDRRLDLTVGKG 156

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            +AR+  ++L  FTL+ ATTR G L++PL+DRFG+  RL FY   DL+ IV R A+L  +
Sbjct: 157 STARTRTLDLPPFTLVGATTRAGSLSSPLRDRFGLIQRLEFYGQADLEAIVARTAELVSV 216

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK-TITREIADAALLRLAIDKMGF 260
            +T  A   IA   RGTPRIA RLLRRVRD A V   K TI   +   AL    +D+ G 
Sbjct: 217 DLTCAACARIAASCRGTPRIANRLLRRVRDVASVRQGKGTIDDCMVAEALSLHRVDQRGL 276

Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320
           D  D R LTM+    GGGPVG+ET++A L E    +E ++EP+++QQG + RTPRGR++ 
Sbjct: 277 DASDRRLLTMLVDQHGGGPVGLETLAAALGEDPVTLETVVEPFLLQQGLLVRTPRGRMVT 336

Query: 321 PIAWQHL 327
             A  HL
Sbjct: 337 DAARSHL 343


>gi|148272995|ref|YP_001222556.1| Holliday junction DNA helicase RuvB [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
 gi|167012668|sp|A5CS06|RUVB_CLAM3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|147830925|emb|CAN01869.1| Holliday junction DNA helicase subunit [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 359

 Score =  303 bits (776), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 155/329 (47%), Positives = 216/329 (65%), Gaps = 4/329 (1%)

Query: 5   EGLLSRNVSQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
            G  S  V + DA+++    LRPR+L EF GQV+    L++ + AA  +  + DH+L  G
Sbjct: 6   HGDASSPVPESDAELAFEGALRPRSLSEFVGQVKVRGQLELLLTAAAMQNRSPDHILLAG 65

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA +VA E     R TSGP I  AGDLAA+L+ L   ++LF+DEIHR++   
Sbjct: 66  PPGLGKTTLAMIVAEESRRPLRLTSGPAIQHAGDLAAVLSALVPGEILFVDEIHRMARSA 125

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMED+++D+MVG+G  A S+ + LS FTL+ ATTR G+L +PL+DRFG    L 
Sbjct: 126 EEMLYLAMEDYRIDIMVGKGAGATSIPLELSPFTLVGATTRSGMLPSPLRDRFGFTAHLE 185

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FYE  +L+ +++R A++  L +  EA  EIA R RGTPRIA RLLRRVRD+A V H    
Sbjct: 186 FYETHELEQVIERAARMLHLEIEHEAVAEIAGRCRGTPRIANRLLRRVRDYALV-HGTEA 244

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
             E   AAL    +D +G D+LD   +  I   FGGGPVG+ T++  + E  + IE ++E
Sbjct: 245 GLESVRAALDLYDVDPLGLDRLDRAVMRGILTRFGGGPVGLNTLAVSVGEEAETIESVVE 304

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           P++++ G + RTPRGR+  P AW+H G++
Sbjct: 305 PFLVRIGLVTRTPRGRVATPAAWEHFGLE 333


>gi|326773261|ref|ZP_08232544.1| holliday junction DNA helicase RuvB [Actinomyces viscosus C505]
 gi|326636491|gb|EGE37394.1| holliday junction DNA helicase RuvB [Actinomyces viscosus C505]
          Length = 346

 Score =  303 bits (775), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 159/322 (49%), Positives = 219/322 (68%), Gaps = 3/322 (0%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           + E A  + LRP+ LE+FTGQ      L V + +A AR    DHVL  GPPGLGKTTLA 
Sbjct: 19  ATERAAEAALRPKRLEDFTGQEVVRGQLSVVLRSALARGVTADHVLLSGPPGLGKTTLAM 78

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++A E+  + R TSGP I  AGDLAA+L++LE+ DVLFIDEIHRL+   EE+LY AMEDF
Sbjct: 79  IIAAEVDGSLRLTSGPAIQHAGDLAAILSSLEEGDVLFIDEIHRLARTAEEMLYLAMEDF 138

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           ++D++VG+GP A S+ ++L  FT++ ATTR GLL  PL+DRFG    L++Y   +L  I+
Sbjct: 139 RVDIVVGKGPGATSIPLSLPPFTVVGATTRAGLLPAPLRDRFGFTGHLDYYGPGELTRIL 198

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT--ITREIADAAL 250
            R A L G+++  +AA E+A RSRGTPRIA RLLRRV+D+AEV H +   +  E A  AL
Sbjct: 199 TRSAGLLGVSLEADAAKELASRSRGTPRIANRLLRRVQDWAEV-HGRPGRLDLEAARGAL 257

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
               +D +G D+LD + L  +   FGGGPVG+ T++  + E  + +E + EPY++++G +
Sbjct: 258 DVFEVDALGLDRLDRQVLEALCTRFGGGPVGLTTLAVSVGEEPETVETVAEPYLVREGLV 317

Query: 311 QRTPRGRLLMPIAWQHLGIDIP 332
            RTPRGR   P A+ HLG++ P
Sbjct: 318 VRTPRGRAATPAAYTHLGLEPP 339


>gi|220912785|ref|YP_002488094.1| Holliday junction DNA helicase RuvB [Arthrobacter chlorophenolicus
           A6]
 gi|254767407|sp|B8H9D6|RUVB_ARTCA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|219859663|gb|ACL40005.1| Holliday junction DNA helicase RuvB [Arthrobacter chlorophenolicus
           A6]
          Length = 361

 Score =  303 bits (775), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 154/319 (48%), Positives = 210/319 (65%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           +E A  + LRP+ L++F GQ      L + ++A++ R  + DHVLF GPPGLGKTTLA +
Sbjct: 14  EERAIEAALRPKNLDDFVGQHRVRKQLSLVLKASRMRGRSADHVLFSGPPGLGKTTLAMI 73

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           VA E+    R +SGP I  AGDLAA+L++L + +VLF+DEIHR+S   EE+LY AMEDF+
Sbjct: 74  VAAEMNAPLRISSGPAIQHAGDLAAILSSLSEGEVLFLDEIHRMSRPAEEMLYMAMEDFR 133

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           +D++VG+G  A ++ + L  FTL+ ATTR GLL  PL+DRFG    L FY + +L+ +++
Sbjct: 134 VDIVVGKGAGATAIPLELPPFTLVGATTRAGLLPGPLRDRFGFTGHLEFYSVPELELVLR 193

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A L  L V      EIA RSRGTPRIA RLLRRVRD+A V     I    A AAL   
Sbjct: 194 RSAGLLDLKVNSAGFSEIAGRSRGTPRIANRLLRRVRDWALVHGVDQIDARSASAALDMY 253

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +DK G D+LD   L  +   FGGGPVG+ T++  + E  + +E + EP+++++G + RT
Sbjct: 254 EVDKKGLDRLDRSVLEALITKFGGGPVGLSTLAIAVGEETETVETVAEPFLVREGLLGRT 313

Query: 314 PRGRLLMPIAWQHLGIDIP 332
           PRGR+ M  AW HLG  IP
Sbjct: 314 PRGRIAMAPAWTHLGYAIP 332


>gi|116670848|ref|YP_831781.1| Holliday junction DNA helicase RuvB [Arthrobacter sp. FB24]
 gi|171855197|sp|A0JXB1|RUVB_ARTS2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|116610957|gb|ABK03681.1| Holliday junction DNA helicase subunit RuvB [Arthrobacter sp. FB24]
          Length = 362

 Score =  303 bits (775), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 151/311 (48%), Positives = 206/311 (66%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L +F GQ      L + +EA++ R  + DHVL  GPPGLGKTTL+ ++A E+   
Sbjct: 22  LRPKNLHDFVGQHRVRKQLSLVLEASRMRGRSADHVLLSGPPGLGKTTLSMIIAAEMNAP 81

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R +SGP I  AGDLAA+L++L + +VLF+DEIHR+S   EE+LY AMEDF++D++VG+G
Sbjct: 82  LRISSGPAIQHAGDLAAILSSLSEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDIVVGKG 141

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
             A ++ + L  FTL+ ATTR GLL  PL+DRFG    L FY +E+L+ +++R A L  L
Sbjct: 142 AGATAIPLELPPFTLVGATTRAGLLPGPLRDRFGFTGHLEFYSVEELELVLRRSAGLLDL 201

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            V      EIA RSRGTPRIA RLLRRVRD+A V   + I    A AAL    +DK G D
Sbjct: 202 KVNSAGFSEIAGRSRGTPRIANRLLRRVRDWALVHGIEQIDARTASAALDMYEVDKRGLD 261

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           +LD   L  +   FGGGPVG+ T++  + E  + +E + EPY++++G + RTPRGR+ M 
Sbjct: 262 RLDRSVLEALITKFGGGPVGLSTLAIAVGEEPETVETVAEPYLVREGLLGRTPRGRIAMA 321

Query: 322 IAWQHLGIDIP 332
            AW HLG  +P
Sbjct: 322 PAWTHLGYAVP 332


>gi|297621195|ref|YP_003709332.1| Holliday junction ATP-dependent DNA helicase ruvB [Waddlia
           chondrophila WSU 86-1044]
 gi|297376496|gb|ADI38326.1| Holliday junction ATP-dependent DNA helicase ruvB [Waddlia
           chondrophila WSU 86-1044]
          Length = 332

 Score =  302 bits (774), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 154/320 (48%), Positives = 212/320 (66%), Gaps = 1/320 (0%)

Query: 7   LLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            +   +++ED    + LRP++L +F GQ      L+V I AAK R + L H LF GPPGL
Sbjct: 4   FIESTLTEEDKTFEVPLRPQSLSDFQGQDLVRERLEVLITAAKQRGDPLTHCLFTGPPGL 63

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLA ++A+ +G N   TSGP+I K GDLA +LTNL   D LFIDE+HRL+  VEE L
Sbjct: 64  GKTTLANILAKSMGTNLVVTSGPMIEKPGDLAGILTNLHCGDFLFIDELHRLNRSVEEYL 123

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           Y AMEDF LDLM+  GP+ARSV++ L+ F+L+ ATTR GLLT PL+ RFG   RL++Y  
Sbjct: 124 YSAMEDFTLDLMIDTGPNARSVQVKLNPFSLVGATTRTGLLTAPLRSRFGFTCRLDYYTP 183

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           + L+ IV R A +   +++ E A EIA RSRGTPRIA  LL+ VRDF++V +      ++
Sbjct: 184 QVLEKIVLRAASIINFSLSAEEAYEIARRSRGTPRIANNLLKWVRDFSQVRNGGKTNLDL 243

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
              AL  L ID+ G D++D++ L ++   + GGPVGI TI+  + E +  +E++ EPY+I
Sbjct: 244 VVQALDMLHIDEQGLDEMDIKILEVMLEQYNGGPVGISTIAVAVGEEKHTLEEVYEPYLI 303

Query: 306 QQGFIQRTPRGRLLMPIAWQ 325
             GFI+RT RGR L  +  +
Sbjct: 304 LLGFIKRTLRGRELTQLGMK 323


>gi|213859992|ref|ZP_03385696.1| Holliday junction DNA helicase B [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
          Length = 240

 Score =  302 bits (774), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 149/238 (62%), Positives = 188/238 (78%), Gaps = 1/238 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S   +  ED     +RP+ L E+ GQ +  S +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRLISAGATIAEDVADRAIRPKLLAEYVGQPQVRSQMEIFIQAAKRRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
           L FY++ DL+ IV R A+  GL ++D+ A E+A R+RGTPRIA RLLRRVRDFAEV H
Sbjct: 181 LEFYQVPDLQHIVGRSARHMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKH 238


>gi|320534403|ref|ZP_08034886.1| Holliday junction DNA helicase RuvB [Actinomyces sp. oral taxon 171
           str. F0337]
 gi|320133378|gb|EFW25843.1| Holliday junction DNA helicase RuvB [Actinomyces sp. oral taxon 171
           str. F0337]
          Length = 346

 Score =  302 bits (773), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 161/334 (48%), Positives = 224/334 (67%), Gaps = 4/334 (1%)

Query: 2   MDREGLLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           +DR+ L+     + E A  + LRP+ LE+FTGQ      L V + +A AR    DHVL  
Sbjct: 7   LDRQRLVGGGADATERAAEAALRPKRLEDFTGQEVVRGQLSVVLRSALARGVTADHVLLS 66

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A E+  + R TSGP I  AGDLAA+L++LE+ DVLFIDEIHRL+  
Sbjct: 67  GPPGLGKTTLAMIIAAEVDGSLRLTSGPAIQHAGDLAAILSSLEEGDVLFIDEIHRLART 126

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            EE+LY AMEDF++D++VG+GP A S+ ++L  FT++ ATTR GLL  PL+DRFG    L
Sbjct: 127 AEEMLYLAMEDFRVDIVVGKGPGATSIPLSLPPFTVVGATTRAGLLPAPLRDRFGFTGHL 186

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           ++Y   +L  I+ R A L G+++  +AA E+A RSRGTPRIA RLLRRV+D+AEV H + 
Sbjct: 187 DYYGPGELTRILTRSAGLLGVSLEADAAKELASRSRGTPRIANRLLRRVQDWAEV-HGRP 245

Query: 241 --ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             +    A  AL    +D +G D+LD + L  +   FGGGPVG+ T++  + E  + +E 
Sbjct: 246 GRLDLTAARGALDVFEVDALGLDRLDRQVLEALCTRFGGGPVGLTTLAVSVGEEPETVET 305

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           + EPY++++G + RTPRGR   P A+ HLG++ P
Sbjct: 306 VAEPYLVREGLVVRTPRGRAATPAAYSHLGLEPP 339


>gi|206603018|gb|EDZ39498.1| Holliday junction DNA helicase (RuvB) [Leptospirillum sp. Group II
           '5-way CG']
          Length = 332

 Score =  302 bits (773), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 153/319 (47%), Positives = 213/319 (66%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L+     +E  D +LLRPRT + + GQ +   +LKV I+AA  R + LDH+L  GPPGLG
Sbjct: 9   LIPEEFPEEIPDTNLLRPRTFDHYVGQKDVIDSLKVAIQAALLREDTLDHILLHGPPGLG 68

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTTLA +VAR +GV+F ++SGP + K GDL  +LT L    +LFIDEIHRL   VEEILY
Sbjct: 69  KTTLAALVARAMGVSFLASSGPALEKGGDLVGILTRLAPGTLLFIDEIHRLPRPVEEILY 128

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            AMEDF +D++   G +AR+ +  L  FTL+ ATTR GLL+ PL+DRFGI   L+FY+  
Sbjct: 129 SAMEDFSIDVVFDRGAAARTFRHRLPPFTLVGATTRAGLLSAPLRDRFGIQRDLDFYQPS 188

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +L  I++R A + G+ +  E + EI  RSRGTPRIA RLL+RVRDF++V     I+R++A
Sbjct: 189 ELARILERSAGILGIGIDPEGSLEIGRRSRGTPRIANRLLKRVRDFSQVNGHPVISRDVA 248

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
             AL    ID  G +++D R++  I   + GGPVGIE ++A L    D + D++EPY+++
Sbjct: 249 HQALRMEGIDDRGLNRIDRRFIETIRVVYNGGPVGIEAMAATLQMDPDTLIDVVEPYLLK 308

Query: 307 QGFIQRTPRGRLLMPIAWQ 325
           +G++ RTP GR L    W+
Sbjct: 309 EGYLARTPAGRRLTASGWE 327


>gi|24213510|ref|NP_710991.1| Holliday junction DNA helicase B [Leptospira interrogans serovar
           Lai str. 56601]
 gi|45658642|ref|YP_002728.1| Holliday junction DNA helicase RuvB [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|44888500|sp|Q8F7Y2|RUVB_LEPIN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|47606087|sp|P61534|RUVB_LEPIC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|24194290|gb|AAN48009.1| holliday junction DNA helicase B [Leptospira interrogans serovar
           Lai str. 56601]
 gi|45601886|gb|AAS71365.1| holliday junction DNA helicase protein [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
          Length = 341

 Score =  301 bits (772), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 149/308 (48%), Positives = 208/308 (67%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           S LRP  L EF GQ E  +NL V+++AAK R  ALDHVL  GPPGLGKTTLA +++ ELG
Sbjct: 17  SGLRPSLLSEFIGQKEVLNNLTVYVQAAKNRKRALDHVLISGPPGLGKTTLAGIISNELG 76

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
                TS PVI K  DLA LLT++ + ++LFIDEIH L   +EEILYPAME++ +DL++G
Sbjct: 77  TRLTITSAPVITKGADLARLLTSMGENEILFIDEIHTLPKKLEEILYPAMENYMIDLVIG 136

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199
           EG +A+ V+I L  FTL+ ATTR GL++ PL+ RFGI +RL++Y  E++K IV R +K+ 
Sbjct: 137 EGVTAQMVQIPLKPFTLVGATTRSGLISEPLKSRFGIQLRLDYYNDEEMKQIVLRSSKIL 196

Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259
           G+ + D+AA EI  RSR TPRIA  LL+R+RDF+EV    ++ + +   A  ++ ID +G
Sbjct: 197 GVLIEDDAALEIGKRSRKTPRIANHLLKRIRDFSEVEGNLSVKKNLCLKAFEKMGIDDLG 256

Query: 260 FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLL 319
            D +D + L  +   + GGPVG++ I+  + E    IED  E +M++ G I RTP GR+ 
Sbjct: 257 LDGMDRQILDCMIDRYKGGPVGLKAIAVVVGEEEKTIEDTYESFMVRIGLINRTPAGRVA 316

Query: 320 MPIAWQHL 327
              A++ L
Sbjct: 317 TEKAYRQL 324


>gi|289523149|ref|ZP_06440003.1| holliday junction DNA helicase RuvB [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
 gi|289503692|gb|EFD24856.1| holliday junction DNA helicase RuvB [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
          Length = 345

 Score =  301 bits (772), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 160/309 (51%), Positives = 217/309 (70%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            +RP+ L EF GQ +    L +FI+AAK+R E LDH LF GPPGLGKTTLA VVA E+G 
Sbjct: 21  FIRPKRLCEFIGQAKVIDKLSMFIKAAKSRDEPLDHTLFCGPPGLGKTTLAGVVAHEMGG 80

Query: 81  NFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
             ++T+GP I++ GDLAA+L++L+ +DVLFIDEIHRLS  VEE+LY AMEDF L++++G+
Sbjct: 81  ELKTTTGPAISRTGDLAAILSSLKAKDVLFIDEIHRLSPQVEEVLYSAMEDFFLNIIIGK 140

Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
           GP ARS+K+ L +FTLI ATT+  LL+ PL+ RFGI  +L +Y  ++L  I+ RGA +  
Sbjct: 141 GPMARSIKLTLPKFTLIGATTKPTLLSAPLRGRFGIIEQLEYYSTDELAEILVRGASVLE 200

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGF 260
           + + +EAA EIA RSRGTPRIA RLL+RVRD AE      +T  IA  AL  L ID  G 
Sbjct: 201 VNLDEEAAMEIAKRSRGTPRIALRLLKRVRDIAEAKKESKVTVAIAKKALDLLGIDDDGI 260

Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320
           D  + + L +I   F GGPVG+ T++A +SE    +E++ EPY+++ G I+RT  GR+  
Sbjct: 261 DDQERKLLDVIVNLFDGGPVGLSTLAAAMSEEERTVEEIYEPYLLRNGLIERTRGGRMAT 320

Query: 321 PIAWQHLGI 329
             A++ LGI
Sbjct: 321 RKAYERLGI 329


>gi|289706227|ref|ZP_06502590.1| Holliday junction DNA helicase RuvB [Micrococcus luteus SK58]
 gi|289557066|gb|EFD50394.1| Holliday junction DNA helicase RuvB [Micrococcus luteus SK58]
          Length = 340

 Score =  301 bits (772), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 154/311 (49%), Positives = 209/311 (67%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPR L+EF GQ+     L + + +A+ R  A DHVL  GPPGLGKTTLA +VA E+   
Sbjct: 24  LRPRHLDEFVGQMRVREQLDLMLASARLRDRAADHVLLSGPPGLGKTTLAMIVAAEMNAP 83

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R +SGP I  AGDLAA+L++L + +VLF+DEIHR+S   EE+LY AMEDF++D++VG+G
Sbjct: 84  LRLSSGPAIQHAGDLAAILSSLTEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDIVVGKG 143

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
             A S+ + L  FTL+ ATTR GLL  PL+DRFG    L+FY  E+L+ +++R A L  +
Sbjct: 144 AGATSIPLELPPFTLVGATTRAGLLPGPLRDRFGFTGHLDFYTEEELERVLRRSALLLDM 203

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  E   +IA RSRGTPRIA RLLRRVRD+A V     +    A AAL    +D  G D
Sbjct: 204 RLATEGYRQIARRSRGTPRIANRLLRRVRDWALVKGLAEVGAHDAAAALDMYDVDGRGLD 263

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           +LD   LT +   FGGGPVG+ T++  + E  + +E + EP++I++G + RTPRGR+ +P
Sbjct: 264 RLDRSVLTALCTTFGGGPVGLSTLATAVGEEAETVETVAEPFLIREGMVARTPRGRVALP 323

Query: 322 IAWQHLGIDIP 332
            AW+HLGI  P
Sbjct: 324 GAWEHLGIAAP 334


>gi|239917789|ref|YP_002957347.1| Holliday junction DNA helicase subunit RuvB [Micrococcus luteus
           NCTC 2665]
 gi|281413718|ref|ZP_06245460.1| Holliday junction DNA helicase RuvB [Micrococcus luteus NCTC 2665]
 gi|239838996|gb|ACS30793.1| Holliday junction DNA helicase subunit RuvB [Micrococcus luteus
           NCTC 2665]
          Length = 340

 Score =  301 bits (771), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 152/311 (48%), Positives = 210/311 (67%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L+EF GQ+     L + + +A+ R  A DHVL  GPPGLGKTTLA +VA E+   
Sbjct: 24  LRPKHLDEFVGQMRVREQLDLMLASARLRDRAADHVLLSGPPGLGKTTLAMIVAAEMNAP 83

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R +SGP I  AGDLAA+L++L + +VLF+DEIHR+S   EE+LY AMEDF++D++VG+G
Sbjct: 84  LRLSSGPAIQHAGDLAAILSSLTEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDIVVGKG 143

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
             A S+ + L  FTL+ ATTR GLL  PL+DRFG    L+FY  E+L+ +++R A L  +
Sbjct: 144 AGATSIPLELPPFTLVGATTRAGLLPGPLRDRFGFTGHLDFYTEEELERVLRRSALLLDM 203

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  E   +IA RSRGTPRIA RLLRRVRD+A V     +    A AAL    +D  G D
Sbjct: 204 RLATEGYRQIARRSRGTPRIANRLLRRVRDWALVKGLAEVGAHDAAAALDMYDVDGRGLD 263

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           +LD   LT +   FGGGPVG+ T++  + E  + +E + EP++I++G + RTPRGR+ +P
Sbjct: 264 RLDRSVLTALCTTFGGGPVGLSTLATAVGEESETVETVAEPFLIREGMVARTPRGRVALP 323

Query: 322 IAWQHLGIDIP 332
            AW+HLG+ +P
Sbjct: 324 GAWEHLGLAVP 334


>gi|239933509|ref|ZP_04690462.1| Holliday junction DNA helicase RuvB [Streptomyces ghanaensis ATCC
           14672]
 gi|291441881|ref|ZP_06581271.1| holliday junction DNA helicase B [Streptomyces ghanaensis ATCC
           14672]
 gi|291344776|gb|EFE71732.1| holliday junction DNA helicase B [Streptomyces ghanaensis ATCC
           14672]
          Length = 383

 Score =  301 bits (771), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 155/308 (50%), Positives = 209/308 (67%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP  L+ F GQ      L + + AA+AR    DHVLF G PGLGKTTL+ ++A E+G  
Sbjct: 40  LRPTDLDGFIGQERVREQLDLVLRAARARGATADHVLFSGAPGLGKTTLSMIIAAEMGAP 99

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           FR TSGP I  AGDLAA+L++L + +VLF+DEIHR+S   EE+LY AMEDF++D++VG G
Sbjct: 100 FRITSGPAIQHAGDLAAVLSSLTEGEVLFLDEIHRMSRSAEEMLYMAMEDFRVDVVVGTG 159

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
             A  + + L  FTL+ ATTR GLL  PL+DRFG    + FY   +L+ ++ R A+L  +
Sbjct: 160 LGATPIPLELPPFTLVGATTRAGLLVPPLRDRFGFTAHMEFYAPAELERVIHRSARLLDV 219

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
           A+  E A EIA RSRGTPRIA RLLRRVRD+A+V     +TRE+A AAL    ID  G D
Sbjct: 220 AIEPEGAAEIAGRSRGTPRIANRLLRRVRDYAQVKADGVVTREVASAALAVYEIDGRGLD 279

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           +LD   L  +   FGGGPVG+ T++  + E R+ +E++ EP+++++G + RTPRGR+  P
Sbjct: 280 RLDRAVLGALLSLFGGGPVGLSTLAVAVGEERETVEEVAEPFLVREGLLARTPRGRVATP 339

Query: 322 IAWQHLGI 329
            AW HLG+
Sbjct: 340 AAWAHLGL 347


>gi|168333337|ref|ZP_02691621.1| Holliday junction DNA helicase RuvB [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 328

 Score =  301 bits (771), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 154/321 (47%), Positives = 220/321 (68%), Gaps = 8/321 (2%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           +LS  +  ED++ ++ RP +L E+ GQ  A  +L++FI+AAK R E+LDHVL  GPPGLG
Sbjct: 5   ILSAELQLEDSETTI-RPVSLAEYIGQEAAKESLEIFIKAAKRRKESLDHVLLYGPPGLG 63

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTTLA V++ E+   F+ TSGP I K GD+AA+L NL+  D+LFIDEIHR+   VEE+LY
Sbjct: 64  KTTLAGVISNEMATGFKVTSGPAIEKPGDIAAILNNLKSGDILFIDEIHRMPRFVEEVLY 123

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            AMEDF +D++VG+G  A+S++++L +FTLI ATT+ GLL++PL+  FGI  RL +Y ++
Sbjct: 124 SAMEDFYIDILVGKGEMAKSIRLDLPKFTLIGATTKAGLLSSPLRXXFGIIQRLEYYTLD 183

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +L  I+ R A +    +   AA EIA  +RGTPR+A R L+RVRD  E+ + K    +I 
Sbjct: 184 ELTAIIMRTAAILNTPIEIVAAMEIAKCARGTPRLANRFLKRVRDIVEIKYDKL---KIG 240

Query: 247 DA----ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           DA    AL  L +D+ G D+LD + L  I   F GGPVG+  ++A L+E  + +ED+ EP
Sbjct: 241 DAECVMALELLGLDEYGLDELDRKILATIKNTFDGGPVGLSALAATLAEEVETLEDVYEP 300

Query: 303 YMIQQGFIQRTPRGRLLMPIA 323
           Y++Q+G I+RT  GR+L   A
Sbjct: 301 YLLQKGLIKRTRSGRMLTEAA 321


>gi|78183746|ref|YP_376180.1| Holliday junction DNA helicase RuvB [Synechococcus sp. CC9902]
 gi|97190400|sp|Q3B0J1|RUVB_SYNS9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|78168040|gb|ABB25137.1| Holliday junction DNA helicase subunit RuvB [Synechococcus sp.
           CC9902]
          Length = 347

 Score =  301 bits (771), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 160/307 (52%), Positives = 205/307 (66%), Gaps = 1/307 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E+ GQ E    L + +EAA  R EALDHVL  GPPGLGKTT+A V+A ELGVN
Sbjct: 37  LRPKRLSEYIGQSELKQVLGIAVEAALGRGEALDHVLLYGPPGLGKTTMALVLAEELGVN 96

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TS P + +  D+  LL NL+ RD+LFIDEIHRLS + EE+LYPAMED +LDL VG+G
Sbjct: 97  CRITSAPALERPRDIVGLLVNLQPRDLLFIDEIHRLSRVAEELLYPAMEDRRLDLTVGKG 156

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            +AR+  ++L  FTL+ ATTR G L++PL+DRFG+  RL FY   DL+ IV R A+L  +
Sbjct: 157 STARTRTLDLPPFTLVGATTRAGSLSSPLRDRFGLIQRLEFYGQTDLEAIVARTAELVSV 216

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK-TITREIADAALLRLAIDKMGF 260
            +T +A   IA   RGTPRIA RLLRRVRD A V   K TI   +   AL    +D  G 
Sbjct: 217 DLTFDACARIAASCRGTPRIANRLLRRVRDVASVRQGKGTIDDAMVAEALSLHRVDHRGL 276

Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320
           D  D R L M+    GGGPVG+ET++A L E    +E ++EP+++QQG + RTPRGR++ 
Sbjct: 277 DASDRRLLAMLMDQHGGGPVGLETLAAALGEDPVTLETVVEPFLLQQGLLVRTPRGRMVT 336

Query: 321 PIAWQHL 327
             A  H+
Sbjct: 337 DAARSHI 343


>gi|325068880|ref|ZP_08127553.1| Holliday junction DNA helicase RuvB [Actinomyces oris K20]
          Length = 346

 Score =  301 bits (770), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 158/322 (49%), Positives = 218/322 (67%), Gaps = 3/322 (0%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           + E A  + LRP+ LE+FTGQ      L V + +A AR    DHVL  GPPGLGKTTLA 
Sbjct: 19  ATERAAEAALRPKRLEDFTGQEVVRGQLSVVLRSALARGVTADHVLLSGPPGLGKTTLAM 78

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++A E+  + R TSGP I  AGDLAA+L++LE+ DVLFIDEIHRL+   EE+LY AMEDF
Sbjct: 79  IIAAEVDGSLRLTSGPAIQHAGDLAAILSSLEEGDVLFIDEIHRLARTAEEMLYLAMEDF 138

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           ++D++VG+GP A S+ ++L  FT++ ATTR GLL  PL+DRFG    L++Y   +L  I+
Sbjct: 139 RVDIVVGKGPGATSIPLSLPPFTVVGATTRAGLLPAPLRDRFGFTGHLDYYGPSELTRIL 198

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT--ITREIADAAL 250
            R A L G+++  +AA E+A RSRGTPRIA RLLRRV+D+AEV H +   +    A  AL
Sbjct: 199 TRSAGLLGVSLEADAAKELASRSRGTPRIANRLLRRVQDWAEV-HGRPGRLDLTAARGAL 257

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
               +D +G D+LD + L  +   FGGGPVG+ T++  + E  + +E + EPY++++G +
Sbjct: 258 DVFEVDALGLDRLDRQVLEALCTRFGGGPVGLTTLAVSVGEEPETVETVAEPYLVREGLV 317

Query: 311 QRTPRGRLLMPIAWQHLGIDIP 332
            RTPRGR   P A+ HLG++ P
Sbjct: 318 VRTPRGRAATPAAYGHLGLEPP 339


>gi|251771978|gb|EES52550.1| Holliday junction DNA helicase (RuvB) [Leptospirillum
           ferrodiazotrophum]
          Length = 346

 Score =  301 bits (770), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 157/306 (51%), Positives = 207/306 (67%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRT +E+ GQ      L++ IEAA AR E LDH+L  GPPGLGKTTLA ++A  + V 
Sbjct: 30  IRPRTFDEYVGQEAVIEGLQISIEAATARGECLDHILLHGPPGLGKTTLASLIAGAMDVP 89

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           F +TSGPV+ K GDL  +L+ L  R VLFIDEIHRL   VEEILY AMEDF +D++   G
Sbjct: 90  FLTTSGPVLEKGGDLVGILSRLAPRTVLFIDEIHRLPRAVEEILYGAMEDFAIDVIFDRG 149

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSAR+ +  L  FTL+ ATTR GLL+ PL+DRFGI   L+FY  ++L  I+ R + + G 
Sbjct: 150 PSARTFRHQLPPFTLVGATTRAGLLSAPLRDRFGIFQDLDFYRPDELVRILLRSSAVLGF 209

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
           ++ +EAA EI  RSRGTPRIA RLLRRVRDFA+V     +TRE+   AL    ID +G +
Sbjct: 210 SLPEEAALEIGCRSRGTPRIANRLLRRVRDFAQVRARGIVTRELVVEALRIEGIDDLGLN 269

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           ++D + L+ I   +GGGPVG+E ++A L    D I D++EPY++++G I RTP GR L  
Sbjct: 270 RVDRKVLSTIGTVYGGGPVGVEALAATLQIEVDTIIDVVEPYLLKEGLIARTPSGRRLTE 329

Query: 322 IAWQHL 327
              + L
Sbjct: 330 YGQKRL 335


>gi|257425765|ref|ZP_05602189.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257271459|gb|EEV03605.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus 55/2053]
          Length = 281

 Score =  301 bits (770), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 141/269 (52%), Positives = 197/269 (73%)

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
           F+ PPGLGKTTL+ ++A E+ VN R+ SGP + + GDLAA+L+ L+  DVLFIDEIHRLS
Sbjct: 5   FLAPPGLGKTTLSNIIANEMEVNIRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLS 64

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            +VEE+LYPAMEDF LD+++G+G  ARS++I+L  FTL+ ATTR G LT PL+DRFG+ +
Sbjct: 65  SVVEEVLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATTRAGSLTGPLRDRFGVHL 124

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           RL +Y   DLK I+ R A++ G  + +E+A E+A RSRGTPR+A RLL+RVRDF +V   
Sbjct: 125 RLEYYNESDLKEIIIRTAEVLGTGIDEESAIELAKRSRGTPRVANRLLKRVRDFQQVNED 184

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
           + I  E    AL  L +D+ G D +D + +  I + + GGPVG++TI+  + E R  IED
Sbjct: 185 EQIYIETTKHALGLLQVDQHGLDYIDHKMMNCIIKQYNGGPVGLDTIAVTIGEERITIED 244

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHL 327
           + EP++IQ+GF++RTPRGR   P+A++H 
Sbjct: 245 VYEPFLIQKGFLERTPRGRKATPLAYEHF 273


>gi|322378944|ref|ZP_08053358.1| RuvB protein [Helicobacter suis HS1]
 gi|322379798|ref|ZP_08054095.1| Holliday junction DNA helicase B [Helicobacter suis HS5]
 gi|321147766|gb|EFX42369.1| Holliday junction DNA helicase B [Helicobacter suis HS5]
 gi|321148620|gb|EFX43106.1| RuvB protein [Helicobacter suis HS1]
          Length = 335

 Score =  301 bits (770), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 148/312 (47%), Positives = 213/312 (68%), Gaps = 1/312 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP   +E+ GQ      L+V I A K R + LDH+LF GPPGLGKTTL+ ++A+EL   
Sbjct: 20  LRPSLWKEYIGQEPLKKLLQVSIMATKKRGDTLDHILFFGPPGLGKTTLSYIIAKELNTP 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + T+ P+I K GDLAA+LTNL+ +++LFIDEIHRLS  +EE+LYPAMEDF+LD+++G  
Sbjct: 80  IKVTTAPMIEKTGDLAAILTNLKPKEILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSK 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            +A+++KI+L+ FTLI ATTR G+L+NPL+DRFG+  RL FY I +L TI  + +     
Sbjct: 140 AAAQTIKIDLAPFTLIGATTRAGMLSNPLRDRFGMHFRLEFYSIAELSTITTQASLKLRK 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  +A+ EIA R RGTPRIA RLLRRVRDFA+ A   +I       AL  L ++  G D
Sbjct: 200 PIEPKASLEIASRCRGTPRIALRLLRRVRDFADSAGKDSIDLATTQLALEALGVNAYGLD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            LDLRYL ++A N    P+G+ T++A + E    +E+++EP+++  G+++RT +GR+  P
Sbjct: 260 TLDLRYLELLA-NAKNRPLGLSTLAASMHEDESTLEEVVEPFLLANGYLERTAKGRIATP 318

Query: 322 IAWQHLGIDIPH 333
             ++ L +  P 
Sbjct: 319 KTYEILKLRPPQ 330


>gi|116328923|ref|YP_798643.1| Holliday junction DNA helicase B [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|122283294|sp|Q04YY5|RUVB_LEPBL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|116121667|gb|ABJ79710.1| Holliday junction DNA helicase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
          Length = 341

 Score =  301 bits (770), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 149/308 (48%), Positives = 208/308 (67%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           S LRP  L EF GQ E  +NL V+++AAK R  ALDHVL  GPPGLGKTTLA +V+ ELG
Sbjct: 17  SGLRPSLLSEFIGQKEVLNNLTVYVQAAKNRKRALDHVLISGPPGLGKTTLAGIVSNELG 76

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
                TS PVI K  DLA LLT++ + ++LFIDEIH L   +EEILYPAME++ +DL++G
Sbjct: 77  TRLTITSAPVITKGADLARLLTSMGENEILFIDEIHTLHKKLEEILYPAMENYMIDLVIG 136

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199
           EG +A+ V+I L  FTL+ ATTR GL++ PL+ RFGI +RL++Y  E++K IV R +++ 
Sbjct: 137 EGVTAQMVQIPLKPFTLVGATTRSGLISEPLKSRFGIQLRLDYYNDEEMKEIVLRSSRIL 196

Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259
           G+ + D+AA EI  RSR TPRIA  LL+R+RDF+EV    ++ + +   A  ++ ID +G
Sbjct: 197 GVKIEDDAALEIGKRSRKTPRIANHLLKRIRDFSEVEGNLSVKKGLCLKAFEKMGIDDLG 256

Query: 260 FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLL 319
            D +D + L  +   + GGPVG++ I+  + E    IED  E +M++ G I RTP GR+ 
Sbjct: 257 LDGMDRQILGCMIDRYKGGPVGLKAIAVVVGEEEKTIEDTYESFMVRIGLINRTPAGRVA 316

Query: 320 MPIAWQHL 327
              A++ L
Sbjct: 317 TEKAYRQL 324


>gi|33862429|ref|NP_893989.1| Holliday junction DNA helicase RuvB [Prochlorococcus marinus str.
           MIT 9313]
 gi|44888416|sp|Q7V910|RUVB_PROMM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|33640542|emb|CAE20331.1| Holliday junction DNA helicase RuvB [Prochlorococcus marinus str.
           MIT 9313]
          Length = 352

 Score =  300 bits (769), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 161/308 (52%), Positives = 212/308 (68%), Gaps = 1/308 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPR LE++ GQ E    L + ++AA  R +ALDHVL  GPPGLGKTT+A V+A ELGV 
Sbjct: 40  LRPRRLEDYIGQRELKQVLAIAVKAAMGRGDALDHVLLYGPPGLGKTTMAMVLAEELGVK 99

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TS P + +  D+  LL NL+ R+VLFIDEIHRL+ + EE+LYPAMED +LDL VG+G
Sbjct: 100 CRVTSAPALERPRDIVGLLVNLQPREVLFIDEIHRLTRVAEELLYPAMEDRRLDLTVGKG 159

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            +AR+  + L  FTL+ ATTR G L++PL+DRFG+  RL FY +EDL+ IV+R A L  L
Sbjct: 160 STARTRALELPPFTLVGATTRAGALSSPLRDRFGLIQRLEFYGLEDLQAIVERAAGLLRL 219

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT-ITREIADAALLRLAIDKMGF 260
            +T +A  EIA R RGTPRIA RLLRRVRD A V   ++ I   + D AL    +D  G 
Sbjct: 220 QLTAQACQEIARRCRGTPRIANRLLRRVRDVASVCGGESLIDAALVDEALTLHRVDARGL 279

Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320
           D  D R L ++  + GGGPVG+ET++A L E    +E ++EP+++Q GF+QRTPRGR++ 
Sbjct: 280 DASDRRLLDLLLESHGGGPVGLETLAAALGEDPATLEAVVEPFLLQLGFLQRTPRGRVVT 339

Query: 321 PIAWQHLG 328
               +HLG
Sbjct: 340 GAGRRHLG 347


>gi|15835923|ref|NP_300447.1| Holliday junction DNA helicase B [Chlamydophila pneumoniae J138]
 gi|16752648|ref|NP_444913.1| Holliday junction DNA helicase B [Chlamydophila pneumoniae AR39]
 gi|12644499|sp|Q9Z8F3|RUVB_CHLPN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|7189290|gb|AAF38214.1| Holliday junction DNA helicase RuvB [Chlamydophila pneumoniae AR39]
 gi|8978762|dbj|BAA98598.1| holliday junction helicase [Chlamydophila pneumoniae J138]
          Length = 337

 Score =  300 bits (769), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 149/310 (48%), Positives = 206/310 (66%), Gaps = 1/310 (0%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           D+SL RP+ LEEF GQ      L +F+ AA  R E   H LF GPPGLGKT+LA +VA  
Sbjct: 15  DVSL-RPKGLEEFYGQHHLKERLDLFLCAALQRGEVPGHCLFFGPPGLGKTSLAHIVAYT 73

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           +G      SGP + K  DL  LLT+L++ DV FIDEIHR+  + EE LY AMEDF++D+ 
Sbjct: 74  VGKGLVLASGPQLIKPSDLLGLLTSLQEGDVFFIDEIHRMGKVAEEYLYSAMEDFKVDIT 133

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
           +  GP ARSV+++L+ FTL+ ATTR G+L+ PL+ RF    RL++Y  +DLK I+ R + 
Sbjct: 134 IDSGPGARSVRVDLAPFTLVGATTRSGMLSEPLRTRFAFSARLSYYSDQDLKEILVRSSH 193

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257
           L G+     A  EIA RSRGTPR+A  LLR VRDFA++     I  ++A+ AL  L ID 
Sbjct: 194 LLGIEADSSALLEIAKRSRGTPRLANHLLRWVRDFAQIREGNCINGDVAEKALAMLLIDD 253

Query: 258 MGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317
            G +++D++ LT I   + GGPVGI+T+S  + E    +ED+ EP++I +GFI++TPRGR
Sbjct: 254 WGLNEIDIKLLTTIIDYYQGGPVGIKTLSVAVGEDIKTLEDVYEPFLILKGFIKKTPRGR 313

Query: 318 LLMPIAWQHL 327
           ++  +A+ HL
Sbjct: 314 MVTQLAYDHL 323


>gi|15618305|ref|NP_224590.1| Holliday junction DNA helicase RuvB [Chlamydophila pneumoniae
           CWL029]
 gi|33241735|ref|NP_876676.1| Holliday junction DNA helicase B [Chlamydophila pneumoniae TW-183]
 gi|4376668|gb|AAD18533.1| Holliday Junction Helicase [Chlamydophila pneumoniae CWL029]
 gi|33236244|gb|AAP98333.1| Holliday junction DNA helicase [Chlamydophila pneumoniae TW-183]
          Length = 337

 Score =  300 bits (768), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 149/310 (48%), Positives = 206/310 (66%), Gaps = 1/310 (0%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           D+SL RP+ LEEF GQ      L +F+ AA  R E   H LF GPPGLGKT+LA +VA  
Sbjct: 15  DVSL-RPKGLEEFYGQHHLKERLDLFLCAALQRGEVPGHCLFFGPPGLGKTSLAHIVAYT 73

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           +G      SGP + K  DL  LLT+L++ DV FIDEIHR+  + EE LY AMEDF++D+ 
Sbjct: 74  VGKGLVLASGPQLIKPSDLLGLLTSLQEGDVFFIDEIHRMGKVAEEYLYSAMEDFKVDIT 133

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
           +  GP ARSV+++L+ FTL+ ATTR G+L+ PL+ RF    RL++Y  +DLK I+ R + 
Sbjct: 134 IDSGPGARSVRVDLAPFTLVGATTRSGMLSEPLRARFAFSARLSYYSDQDLKEILVRSSH 193

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257
           L G+     A  EIA RSRGTPR+A  LLR VRDFA++     I  ++A+ AL  L ID 
Sbjct: 194 LLGIEADSSALLEIAKRSRGTPRLANHLLRWVRDFAQIREGNCINGDVAEKALAMLLIDD 253

Query: 258 MGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317
            G +++D++ LT I   + GGPVGI+T+S  + E    +ED+ EP++I +GFI++TPRGR
Sbjct: 254 WGLNEIDIKLLTTIIDYYQGGPVGIKTLSVAVGEDIKTLEDVYEPFLILKGFIKKTPRGR 313

Query: 318 LLMPIAWQHL 327
           ++  +A+ HL
Sbjct: 314 MVTQLAYDHL 323


>gi|329945620|ref|ZP_08293353.1| Holliday junction DNA helicase RuvB [Actinomyces sp. oral taxon 170
           str. F0386]
 gi|328528623|gb|EGF55588.1| Holliday junction DNA helicase RuvB [Actinomyces sp. oral taxon 170
           str. F0386]
          Length = 346

 Score =  300 bits (768), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 158/322 (49%), Positives = 219/322 (68%), Gaps = 3/322 (0%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           + E A  + LRP+ LE+FTGQ      L V + +A AR    DHVL  GPPGLGKTTLA 
Sbjct: 19  ATERAAEAALRPKRLEDFTGQEVVRGQLSVVLRSALARGVTADHVLLSGPPGLGKTTLAM 78

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++A E+  + R TSGP I  AGDLAA+L++LE+ DVLFIDEIHRL+   EE+LY AMEDF
Sbjct: 79  IIAAEVEGSLRLTSGPAIQHAGDLAAILSSLEEGDVLFIDEIHRLARTAEEMLYLAMEDF 138

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           ++D++VG+GP A S+ ++L  FT++ ATTR GLL  PL+DRFG    L++Y   +L  I+
Sbjct: 139 RVDIVVGKGPGATSIPLSLPPFTVVGATTRAGLLPAPLRDRFGFTGHLDYYGPGELTRIL 198

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT--ITREIADAAL 250
            R A L G+++  +AA E+A RSRGTPRIA RLLRRV+D+AEV H +   +    A +AL
Sbjct: 199 TRSAGLLGVSLDADAARELASRSRGTPRIANRLLRRVQDWAEV-HGRPGRLDLTAARSAL 257

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
               +D +G D+LD + L  +   FGGGPVG+ T++  + E  + +E + EPY++++G +
Sbjct: 258 DIFEVDALGLDRLDRQVLEALCTRFGGGPVGLTTLAVSVGEEPETVETVAEPYLVREGLV 317

Query: 311 QRTPRGRLLMPIAWQHLGIDIP 332
            RTPRGR   P A+ HLG++ P
Sbjct: 318 VRTPRGRAATPAAYSHLGLEPP 339


>gi|116330471|ref|YP_800189.1| Holliday junction DNA helicase B [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|122281771|sp|Q04UI9|RUVB_LEPBJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|116124160|gb|ABJ75431.1| Holliday junction DNA helicase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 341

 Score =  300 bits (768), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 149/308 (48%), Positives = 208/308 (67%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           S LRP  L EF GQ E  +NL V+++AAK R  ALDHVL  GPPGLGKTTLA +V+ ELG
Sbjct: 17  SGLRPSLLSEFIGQKEVLNNLTVYVQAAKNRKRALDHVLISGPPGLGKTTLAGIVSNELG 76

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
                TS PVI K  DLA LLT++ + ++LFIDEIH L   +EEILYPAME++ +DL++G
Sbjct: 77  TRLTITSAPVITKGADLARLLTSVGENEILFIDEIHTLHKKLEEILYPAMENYMIDLVIG 136

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199
           EG +A+ V+I L  FTL+ ATTR GL++ PL+ RFGI +RL++Y  E++K IV R +++ 
Sbjct: 137 EGVTAQMVQIPLKPFTLVGATTRSGLISEPLKSRFGIQLRLDYYNDEEMKEIVLRSSRIL 196

Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259
           G+ + D+AA EI  RSR TPRIA  LL+R+RDF+EV    ++ + +   A  ++ ID +G
Sbjct: 197 GVKIEDDAALEIGKRSRKTPRIANHLLKRIRDFSEVEGNLSVKKGLCLKAFEKMGIDDLG 256

Query: 260 FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLL 319
            D +D + L  +   + GGPVG++ I+  + E    IED  E +M++ G I RTP GR+ 
Sbjct: 257 LDGMDRQILGCMIDRYKGGPVGLKAIAVVVGEEEKTIEDTYESFMVRIGLINRTPAGRVA 316

Query: 320 MPIAWQHL 327
              A++ L
Sbjct: 317 TEKAYRQL 324


>gi|311894863|dbj|BAJ27271.1| putative Holliday junction ATP-dependent DNA helicase RuvB
           [Kitasatospora setae KM-6054]
          Length = 367

 Score =  300 bits (767), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 158/324 (48%), Positives = 218/324 (67%), Gaps = 1/324 (0%)

Query: 7   LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           LL+ +   ED  + + LRP+ L+EF GQ      L + ++AA+ R  A DHVL  GPPGL
Sbjct: 18  LLTASADGEDQAVEAALRPKLLDEFIGQERVREQLSLVLQAARKRGAAPDHVLLSGPPGL 77

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTL+ ++A EL    R TSGP I  AGDLAA+L++L + +VLF+DEIHR+S   EE+L
Sbjct: 78  GKTTLSMIIAAELNAPIRITSGPAIQHAGDLAAILSSLTEGEVLFLDEIHRMSRPAEEML 137

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           Y AMEDF++D++VG+GP A ++ + L  FTL+ ATTR GLL  PL+DRFG    + FY  
Sbjct: 138 YMAMEDFRVDVIVGKGPGATAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTGHMEFYAP 197

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
            +L+ +V R A L  + +    A EIA RSRGTPRIA RLLRRVRDFA+V H   ++REI
Sbjct: 198 AELERVVHRSAGLLDVEIDPAGAAEIAGRSRGTPRIANRLLRRVRDFAQVRHDGLVSREI 257

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           A  AL    +D  G D+LD   L  + + FGGGPVG+ T++  + E  + +E++ EP+++
Sbjct: 258 AARALEVYEVDARGLDRLDRAVLEALLKLFGGGPVGLSTLAVAVGEEAETVEEVAEPFLV 317

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGI 329
           ++G + RTPRGR+    AWQHLG+
Sbjct: 318 REGLLARTPRGRIATAAAWQHLGL 341


>gi|254391316|ref|ZP_05006520.1| holliday junction ATP-dependent DNA helicase ruvB [Streptomyces
           clavuligerus ATCC 27064]
 gi|294811583|ref|ZP_06770226.1| Holliday junction ATP-dependent DNA helicase ruvB [Streptomyces
           clavuligerus ATCC 27064]
 gi|326440228|ref|ZP_08214962.1| Holliday junction DNA helicase RuvB [Streptomyces clavuligerus ATCC
           27064]
 gi|197705007|gb|EDY50819.1| holliday junction ATP-dependent DNA helicase ruvB [Streptomyces
           clavuligerus ATCC 27064]
 gi|294324182|gb|EFG05825.1| Holliday junction ATP-dependent DNA helicase ruvB [Streptomyces
           clavuligerus ATCC 27064]
          Length = 365

 Score =  300 bits (767), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 153/312 (49%), Positives = 213/312 (68%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP++L+EF GQ      L + + AA+AR    DHVL  G PGLGKTTL+ ++A E+   
Sbjct: 37  LRPKSLDEFVGQERVREQLDLVLRAARARGATADHVLLSGAPGLGKTTLSMIIAAEMQAP 96

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGP I  AGDLAA+L++L++ +VLF+DEIHR+S   EE+LY AMEDF++D++VG+G
Sbjct: 97  IRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDVIVGKG 156

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P A ++ + L  FTL+ ATTR GLL  PL+DRFG    + FY+  +L+ +V R A L  +
Sbjct: 157 PGATAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTAHMEFYDPAELQRVVHRSALLLDV 216

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  + A EIA RSRGTPRIA RLLRRVRD+A+V     ITRE+A AAL    +D  G D
Sbjct: 217 EIDTDGAAEIAGRSRGTPRIANRLLRRVRDYAQVKVDGRITREVACAALRVYEVDSRGLD 276

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           +LD   L  + + F GGPVG+ T++  + E R+ +E++ EP+++++G + RTPRGR+  P
Sbjct: 277 RLDRAVLEALLKLFAGGPVGLSTLAVAVGEERETVEEVAEPFLVREGLLARTPRGRIATP 336

Query: 322 IAWQHLGIDIPH 333
            AW HLG+  P 
Sbjct: 337 AAWAHLGLVPPQ 348


>gi|124021906|ref|YP_001016213.1| Holliday junction DNA helicase RuvB [Prochlorococcus marinus str.
           MIT 9303]
 gi|123962192|gb|ABM76948.1| Holliday junction DNA helicase RuvB [Prochlorococcus marinus str.
           MIT 9303]
          Length = 398

 Score =  299 bits (766), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 160/308 (51%), Positives = 212/308 (68%), Gaps = 1/308 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ LE++ GQ E    L + ++AA  R +ALDHVL  GPPGLGKTT+A V+A ELGV 
Sbjct: 86  LRPKRLEDYIGQRELKQVLGIAVKAAMGRGDALDHVLLYGPPGLGKTTMAMVLAEELGVK 145

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TS P + +  D+  LL NL+ R+VLFIDEIHRL+ + EE+LYPAMED +LDL VG+G
Sbjct: 146 CRVTSAPALERPRDIVGLLVNLQPREVLFIDEIHRLTRVAEELLYPAMEDRRLDLTVGKG 205

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            +AR+  + L  FTL+ ATTR G L++PL+DRFG+  RL FY +EDL+ IV+R A L  L
Sbjct: 206 STARTRALELPPFTLVGATTRAGALSSPLRDRFGLIQRLEFYGLEDLQAIVERAAGLLRL 265

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT-ITREIADAALLRLAIDKMGF 260
            +T +A  EIA R RGTPRIA RLLRRVRD A V   ++ I   + D AL    +D  G 
Sbjct: 266 QLTAQACQEIARRCRGTPRIANRLLRRVRDVASVCGGESLIDAALVDEALTLHRVDARGL 325

Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320
           D  D R L ++  + GGGPVG+ET++A L E    +E ++EP+++Q GF+QRTPRGR++ 
Sbjct: 326 DASDRRLLDLLLESHGGGPVGLETLAAALGEDPATLEAVVEPFLLQLGFLQRTPRGRVVT 385

Query: 321 PIAWQHLG 328
               +HLG
Sbjct: 386 GAGRRHLG 393


>gi|119952828|ref|YP_945037.1| Holliday junction DNA helicase RuvB [Borrelia turicatae 91E135]
 gi|119861599|gb|AAX17367.1| Holliday junction DNA helicase RuvB [Borrelia turicatae 91E135]
          Length = 347

 Score =  299 bits (766), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 147/328 (44%), Positives = 213/328 (64%), Gaps = 7/328 (2%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           D+  L  RN S+       LRP++L++F  Q     NL +FI+A++ R EALDHV   GP
Sbjct: 13  DKNFLYDRNESE-------LRPKSLKDFVRQSHIKENLNIFIKASRDRNEALDHVFLSGP 65

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++A E+    + TS P + K  D+  +LT L+D+ +LFIDEIHRL  ++E
Sbjct: 66  PGLGKTTLASIIAFEMNTTIKMTSAPALDKPKDIVGILTTLDDKSILFIDEIHRLKPVIE 125

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LY AMED+++D ++G+GP+AR+V++ + +FTLI ATT+ G + +PL  RFGI  R + 
Sbjct: 126 EMLYIAMEDYKIDWIIGQGPAARTVRMPIPKFTLIGATTKPGKVASPLYARFGIVFRFDL 185

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  ++L  I+QR + +  + + D+AA  +A  SRGTPR+A RLLRR+RDFA+V     IT
Sbjct: 186 YNEDELVKIIQRNSIILNVKLEDKAAWLLARSSRGTPRVANRLLRRMRDFAQVGGYGLIT 245

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             I  + L  L ID  G D+ D   L  +   F GGPVG+ET++  + E  D++ED  EP
Sbjct: 246 ESIVSSGLEMLKIDHKGLDEQDRNILRSLILKFKGGPVGVETLAISVGETADSLEDFYEP 305

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           Y+I +G I+RT RGR     A+ HL ++
Sbjct: 306 YLILKGLIERTSRGRKATDFAYFHLNLN 333


>gi|171769890|sp|A2C638|RUVB_PROM3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
          Length = 352

 Score =  299 bits (765), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 160/308 (51%), Positives = 212/308 (68%), Gaps = 1/308 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ LE++ GQ E    L + ++AA  R +ALDHVL  GPPGLGKTT+A V+A ELGV 
Sbjct: 40  LRPKRLEDYIGQRELKQVLGIAVKAAMGRGDALDHVLLYGPPGLGKTTMAMVLAEELGVK 99

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TS P + +  D+  LL NL+ R+VLFIDEIHRL+ + EE+LYPAMED +LDL VG+G
Sbjct: 100 CRVTSAPALERPRDIVGLLVNLQPREVLFIDEIHRLTRVAEELLYPAMEDRRLDLTVGKG 159

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            +AR+  + L  FTL+ ATTR G L++PL+DRFG+  RL FY +EDL+ IV+R A L  L
Sbjct: 160 STARTRALELPPFTLVGATTRAGALSSPLRDRFGLIQRLEFYGLEDLQAIVERAAGLLRL 219

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT-ITREIADAALLRLAIDKMGF 260
            +T +A  EIA R RGTPRIA RLLRRVRD A V   ++ I   + D AL    +D  G 
Sbjct: 220 QLTAQACQEIARRCRGTPRIANRLLRRVRDVASVCGGESLIDAALVDEALTLHRVDARGL 279

Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320
           D  D R L ++  + GGGPVG+ET++A L E    +E ++EP+++Q GF+QRTPRGR++ 
Sbjct: 280 DASDRRLLDLLLESHGGGPVGLETLAAALGEDPATLEAVVEPFLLQLGFLQRTPRGRVVT 339

Query: 321 PIAWQHLG 328
               +HLG
Sbjct: 340 GAGRRHLG 347


>gi|227875447|ref|ZP_03993588.1| crossover junction endoribonuclease subunit B [Mobiluncus mulieris
           ATCC 35243]
 gi|269977301|ref|ZP_06184274.1| holliday junction DNA helicase RuvB [Mobiluncus mulieris 28-1]
 gi|227844001|gb|EEJ54169.1| crossover junction endoribonuclease subunit B [Mobiluncus mulieris
           ATCC 35243]
 gi|269934604|gb|EEZ91165.1| holliday junction DNA helicase RuvB [Mobiluncus mulieris 28-1]
          Length = 353

 Score =  299 bits (765), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 158/311 (50%), Positives = 215/311 (69%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+TL +F GQ    + L + + AAK R +A+DHVL  GPPGLGKTTLA ++A E+  +
Sbjct: 30  LRPKTLMDFVGQNTVKTQLNLVLRAAKERGDAVDHVLLAGPPGLGKTTLAMIIAAEMNSS 89

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGP I+ AGDLAA+L++L++ DVLFIDEIHRL+   EE+LY AMEDF++D++VG+G
Sbjct: 90  LRLTSGPAISHAGDLAAILSSLQEGDVLFIDEIHRLARPAEEMLYLAMEDFRVDVVVGKG 149

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P A S+ ++L +FTL+ ATTR GLL  PL+DRFG    +  YE EDL  IV+R A L G 
Sbjct: 150 PGATSIPLSLPQFTLVGATTRAGLLPAPLRDRFGFTAHMEPYEAEDLSLIVKRSAALLGA 209

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T EAA EIA RSRGTPR+A RLLRRV DFA V   +    E A A L    +D+MG D
Sbjct: 210 CITGEAAHEIAKRSRGTPRVANRLLRRVIDFALVHGNEECDLEAAQATLKLFEVDEMGLD 269

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           +LD   L  I   F GGPVG  T++  + E ++ +E+++EP++++ G + RT RGR++  
Sbjct: 270 RLDRDVLHAIVERFQGGPVGAGTLAVSVGEEKETVEEVVEPFLVRVGLLARTQRGRVITA 329

Query: 322 IAWQHLGIDIP 332
             + HLG+ +P
Sbjct: 330 KGYTHLGLPVP 340


>gi|330444415|ref|YP_004377401.1| Holliday junction DNA helicase RuvB [Chlamydophila pecorum E58]
 gi|328807525|gb|AEB41698.1| Holliday junction DNA helicase RuvB [Chlamydophila pecorum E58]
          Length = 330

 Score =  298 bits (764), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 146/306 (47%), Positives = 204/306 (66%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L+EF GQ      L +F++AA  R E   H LF GPPGLGKT+LA +VA  +G  
Sbjct: 18  LRPKGLQEFYGQAHVKERLDLFLQAALQRQEVPGHCLFFGPPGLGKTSLAHIVAATVGKG 77

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
             + SGP + K  DL  LLT+L++ DV FIDEIHRL    EE LYPA+EDF++D+ +  G
Sbjct: 78  LVTASGPQLVKPSDLIGLLTSLQEGDVFFIDEIHRLGKAAEEYLYPAIEDFKIDITIDSG 137

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P ARSV+I+L+ FTL+ ATTR G+L+ PL+ RF    RL++Y  +DL  I+ R AKL G+
Sbjct: 138 PGARSVRIDLAPFTLVGATTRSGMLSEPLRTRFAFSARLSYYSDQDLIDILTRSAKLLGI 197

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
                A  EIA RSRGTPR+A  LL+ VRDFA++     I  ++A+ AL  L ID  G +
Sbjct: 198 QAEPAALLEIARRSRGTPRLANHLLKWVRDFAQMREGNCINGDVAEKALAMLLIDDWGLN 257

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           ++D++ LT +   + GGPVGI+T+S  + E    +ED+ EP++I +G I++TPRGR++  
Sbjct: 258 EVDVKLLTTMIEYYQGGPVGIKTLSVAVGEDIKTLEDVYEPFLILKGLIKKTPRGRMVTQ 317

Query: 322 IAWQHL 327
           +A+ HL
Sbjct: 318 LAYDHL 323


>gi|124516218|gb|EAY57726.1| Holliday junction DNA helicase (RuvB) [Leptospirillum rubarum]
          Length = 332

 Score =  298 bits (764), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 153/323 (47%), Positives = 213/323 (65%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           D + L      +E  D +LLRPRT + + GQ +   +LKV I+AA  R + LDH+L  GP
Sbjct: 5   DADLLTPEEFPEEIPDANLLRPRTFDHYVGQKDVIDSLKVAIQAALLREDTLDHILLHGP 64

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA +VAR +GV+F ++SGP + K GDL  +LT L    +LFIDEIHRL   VE
Sbjct: 65  PGLGKTTLAALVARAMGVSFLASSGPALEKGGDLVGILTRLAPGTLLFIDEIHRLPRAVE 124

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILY AMEDF +D++   G +AR+ +  +  FTL+ ATTR GLL+ PL+DRFGI   L+F
Sbjct: 125 EILYSAMEDFAIDVVFDRGAAARTFRHRIPPFTLVGATTRAGLLSAPLRDRFGIQRDLDF 184

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y+  +L  I++R A + G+ +  E + EI  RSRGTPRIA RLL+RVRDF++V     I+
Sbjct: 185 YQPPELARILERSAGILGIGIDPEGSLEIGRRSRGTPRIANRLLKRVRDFSQVHGHPVIS 244

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           R +A  AL    ID  G +++D R++  I   + GGPVGIE ++A L    D + D++EP
Sbjct: 245 RAVAHQALRMEGIDDRGLNRIDRRFIETIRVVYNGGPVGIEAMAATLQMDPDTLIDVVEP 304

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQ 325
           Y++++G++ RTP GR L    W+
Sbjct: 305 YLLKEGYLARTPAGRRLTASGWE 327


>gi|306818759|ref|ZP_07452481.1| crossover junction ATP-dependent DNA helicase RuvB [Mobiluncus
           mulieris ATCC 35239]
 gi|307700682|ref|ZP_07637707.1| Holliday junction DNA helicase RuvB [Mobiluncus mulieris FB024-16]
 gi|304648445|gb|EFM45748.1| crossover junction ATP-dependent DNA helicase RuvB [Mobiluncus
           mulieris ATCC 35239]
 gi|307613677|gb|EFN92921.1| Holliday junction DNA helicase RuvB [Mobiluncus mulieris FB024-16]
          Length = 353

 Score =  298 bits (763), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 158/311 (50%), Positives = 215/311 (69%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+TL +F GQ    + L + + AAK R +A+DHVL  GPPGLGKTTLA ++A E+  +
Sbjct: 30  LRPKTLMDFVGQNTVKTQLNLVLRAAKERGDAVDHVLLAGPPGLGKTTLAMIIAAEMNSS 89

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGP I+ AGDLAA+L++L++ DVLFIDEIHRL+   EE+LY AMEDF++D++VG+G
Sbjct: 90  LRLTSGPAISHAGDLAAILSSLQEGDVLFIDEIHRLARPAEEMLYLAMEDFRVDVVVGKG 149

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P A S+ ++L +FTL+ ATTR GLL  PL+DRFG    +  YE EDL  IV+R A L G 
Sbjct: 150 PGATSIPLSLPQFTLVGATTRAGLLPAPLRDRFGFTAHMEPYEAEDLSLIVKRSAALLGA 209

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T EAA EIA RSRGTPR+A RLLRRV DFA V   +    E A A L    +D+MG D
Sbjct: 210 RITGEAAHEIAKRSRGTPRVANRLLRRVIDFALVHGNEECDLEAAQATLKLFEVDEMGLD 269

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           +LD   L  I   F GGPVG  T++  + E ++ +E+++EP++++ G + RT RGR++  
Sbjct: 270 RLDRDVLHAIVERFQGGPVGAGTLAVSVGEEKETVEEVVEPFLVRVGLLARTQRGRVITA 329

Query: 322 IAWQHLGIDIP 332
             + HLG+ +P
Sbjct: 330 KGYTHLGLPVP 340


>gi|168700086|ref|ZP_02732363.1| Holliday junction DNA helicase B [Gemmata obscuriglobus UQM 2246]
          Length = 347

 Score =  298 bits (763), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 150/328 (45%), Positives = 212/328 (64%), Gaps = 1/328 (0%)

Query: 2   MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M RE +++     E     + LRP+ L+E  GQ +    L++ + A+K   E L H+LF 
Sbjct: 1   MAREKVITSGPGDEQKKHDAALRPKLLKEVIGQRKVAERLEIAVRASKKLNEPLGHILFD 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTT A V+  ELG + + TSGP +AK  DL   LTNLE+  VLFIDEIHR+  +
Sbjct: 61  GPPGLGKTTFATVLPNELGTSLQMTSGPALAKPADLLPFLTNLEEGSVLFIDEIHRMPRV 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE +YPAMEDF++D+++GEG SAR++ + L RFTLI ATTR G+L+ P++DRF +   L
Sbjct: 121 VEEFIYPAMEDFRIDIVLGEGMSARTISMTLKRFTLIGATTRSGMLSGPMRDRFKMHEHL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY +++L TI    A      +T +A+ E+A RSRGTPR+A   L   R FA   H  T
Sbjct: 181 EFYSVDELATIATVNAAKLNTPITSQASLELARRSRGTPRVANSRLHWTRSFAAAQHDGT 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           IT E+A AAL    +D+ G D+ D +YL  +   +GGGP G+E ++A ++   D + D I
Sbjct: 241 ITEEVARAALDMAEVDRDGLDKNDRKYLETLIDLYGGGPTGVEALAATINLASDTLSDEI 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
           EPY++++ +I R+PRGR+ MP A+  LG
Sbjct: 301 EPYLLREQYITRSPRGRVAMPRAYSALG 328


>gi|163840741|ref|YP_001625146.1| Holliday junction DNA helicase RuvB [Renibacterium salmoninarum
           ATCC 33209]
 gi|162954217|gb|ABY23732.1| holliday junction DNA helicase [Renibacterium salmoninarum ATCC
           33209]
          Length = 341

 Score =  298 bits (762), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 152/331 (45%), Positives = 215/331 (64%), Gaps = 1/331 (0%)

Query: 3   DREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           D   L+S +   E+  I + LRP+ L++F GQ      L + +EA++ R  + DHVL  G
Sbjct: 7   DSRALVSSDGEPEERMIEAALRPKNLDDFVGQKRVRGQLSLVLEASRIRGRSADHVLLSG 66

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+    R +SGP I  AGDLAA+L++L + +VLF+DEIHR+S   
Sbjct: 67  PPGLGKTTLAMIIAAEMNAPLRISSGPAIQHAGDLAAILSSLTEGEVLFLDEIHRMSRPA 126

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMEDF++D++VG+G  A ++ + +  FTL+ ATTR GLL  PL+DRFG    L 
Sbjct: 127 EEMLYMAMEDFRVDIVVGKGAGATAIPLEIPPFTLVGATTRAGLLPGPLRDRFGFTGHLE 186

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY + +L+ +++R A L  L ++     EIA RSRGTPRIA RLLRRVRD+A V   + I
Sbjct: 187 FYSVPELELVLRRSAGLLDLKLSSAGFSEIAGRSRGTPRIANRLLRRVRDWALVNGVQQI 246

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
               A AAL    +D  G D+LD   L  +   F GGPVG+ T++  + E  + +E + E
Sbjct: 247 DARTASAALEMYEVDARGLDRLDRAVLQALIGKFNGGPVGLSTLAIAVGEEMETVETVAE 306

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           P+++++G + RTPRGR+ MP AW HLG+  P
Sbjct: 307 PFLVREGLLGRTPRGRIAMPAAWDHLGVPRP 337


>gi|21220018|ref|NP_625797.1| Holliday junction DNA helicase RuvB [Streptomyces coelicolor A3(2)]
 gi|256788882|ref|ZP_05527313.1| Holliday junction DNA helicase RuvB [Streptomyces lividans TK24]
 gi|289772770|ref|ZP_06532148.1| Holliday junction DNA helicase RuvB [Streptomyces lividans TK24]
 gi|20140294|sp|Q9L291|RUVB_STRCO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|6822214|emb|CAB70920.1| holliday junction DNA helicase [Streptomyces coelicolor A3(2)]
 gi|289702969|gb|EFD70398.1| Holliday junction DNA helicase RuvB [Streptomyces lividans TK24]
          Length = 357

 Score =  298 bits (762), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 157/329 (47%), Positives = 218/329 (66%), Gaps = 1/329 (0%)

Query: 5   EGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E L+      ED  + + LRP+ L EF GQ +    L + + AA+AR    DHVL  G P
Sbjct: 14  ERLVGAAADGEDQAVEAALRPKDLGEFIGQEKVREQLDLVLRAARARGATADHVLLSGAP 73

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTL+ ++A E+    R TSGP I  AGDLAA+L++L++ +VLF+DEIHR+S   EE
Sbjct: 74  GLGKTTLSMIIAAEMEAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEE 133

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LY AMEDF++D++VG+GP A ++ + L  FTL+ ATTR GLL  PL+DRFG    + FY
Sbjct: 134 MLYMAMEDFRVDVIVGKGPGATAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTAHMEFY 193

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
              +L+ ++ R A L  + +    A EIA RSRGTPRIA RLLRRVRD+A+V     IT+
Sbjct: 194 GPAELERVIHRSAGLLDVEIDPTGAAEIAGRSRGTPRIANRLLRRVRDYAQVKADGLITQ 253

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           EIA AAL    +D  G D+LD   L  + + FGGGPVG+ T++  + E R+ +E++ EP+
Sbjct: 254 EIAAAALAVYEVDARGLDRLDRGVLEALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPF 313

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++++G + RTPRGR+  P AW HLG+  P
Sbjct: 314 LVREGLLARTPRGRVATPAAWAHLGLTPP 342


>gi|269303267|gb|ACZ33367.1| holliday junction DNA helicase RuvB [Chlamydophila pneumoniae
           LPCoLN]
          Length = 337

 Score =  298 bits (762), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 148/310 (47%), Positives = 205/310 (66%), Gaps = 1/310 (0%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           D+SL RP+ LEEF GQ      L +F+ AA  R E   H LF GPPGLGKT+LA +VA  
Sbjct: 15  DVSL-RPKGLEEFYGQHHLKERLDLFLCAALQRGEVPGHCLFFGPPGLGKTSLAHIVAYT 73

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           +G      SGP + K  DL  LLT+L++ DV FIDEIHR+  + EE LY AMEDF++D+ 
Sbjct: 74  VGKGLVLASGPQLIKPSDLLGLLTSLQEGDVFFIDEIHRMGKVAEEYLYSAMEDFKVDIT 133

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
           +  GP ARSV+++L+ FTL+ ATTR G+L+ PL+ RF    RL++Y  +DLK I+ R + 
Sbjct: 134 IDSGPGARSVRVDLAPFTLVGATTRSGMLSEPLRARFAFSARLSYYSDQDLKEILVRSSH 193

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257
           L G+     A  EIA RSRGTPR+A  LLR VRDFA++     I  ++A+ AL  L ID 
Sbjct: 194 LLGIEADSSALLEIAKRSRGTPRLANHLLRWVRDFAQIREGNCINGDVAEKALAMLLIDD 253

Query: 258 MGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317
            G +++D++ LT I   + GGPVGI+T+S  + E    +ED+ EP++I +G I++TPRGR
Sbjct: 254 WGLNEIDIKLLTTIIDYYQGGPVGIKTLSVAVGEDIKTLEDVYEPFLILKGLIKKTPRGR 313

Query: 318 LLMPIAWQHL 327
           ++  +A+ HL
Sbjct: 314 MVTQLAYDHL 323


>gi|28493236|ref|NP_787397.1| Holliday junction DNA helicase RuvB [Tropheryma whipplei str.
           Twist]
 gi|44888464|sp|Q83HN0|RUVB_TROW8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|44888470|sp|Q83MZ8|RUVB_TROWT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|28476277|gb|AAO44366.1| holliday junction binding protein RuvB [Tropheryma whipplei str.
           Twist]
          Length = 345

 Score =  298 bits (762), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 165/330 (50%), Positives = 222/330 (67%), Gaps = 2/330 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           + +R  LL    S E      LRP+ L EF GQ +  + L + I+AAK +    DH L  
Sbjct: 6   LQNRNNLLDVT-SDEKQTEGALRPKLLAEFVGQNKVKNQLALLIQAAKIQGRVTDHALLA 64

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA +VA E GV+ R +SGP I  AGDLAALL++L   ++LFIDEIHR+S +
Sbjct: 65  GPPGLGKTTLAMIVAAECGVSIRMSSGPAIQHAGDLAALLSSLLPGELLFIDEIHRMSRV 124

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            EE+LY AMEDF++D+MVG+GP A SV + LS FTL+ ATTR GLL  PL+DRFG   RL
Sbjct: 125 AEEMLYLAMEDFRIDIMVGKGPGATSVPLELSPFTLVGATTRAGLLPGPLRDRFGFTARL 184

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           +FY  E+L  ++ R A+L  +   D+A   IA+RSRGTPR+A RLLRR RD+  V+++  
Sbjct: 185 DFYSPEELLQVLIRSARLMEIQYYDDALESIAVRSRGTPRVANRLLRRTRDYLLVSNSSE 244

Query: 241 I-TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           I ++EIA  A+    +D +G D+LD   L  I   F GGPVGI+T+SA L E  + IE+ 
Sbjct: 245 ILSKEIALKAMDVYEVDSLGLDRLDRAVLHAIFDRFSGGPVGIKTLSAYLGEEAETIENS 304

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           IEP++++QG + RTPRGR +  +A +H+G 
Sbjct: 305 IEPFLVRQGLLVRTPRGRQITDLARKHMGF 334


>gi|87308972|ref|ZP_01091110.1| holliday junction DNA helicase RuvB [Blastopirellula marina DSM
           3645]
 gi|87288315|gb|EAQ80211.1| holliday junction DNA helicase RuvB [Blastopirellula marina DSM
           3645]
          Length = 336

 Score =  298 bits (762), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 150/326 (46%), Positives = 211/326 (64%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M RE LL +       D   LRP+++ +  GQ E    L++ ++AA  R E L H+LF G
Sbjct: 1   MAREALLQQGDGHGPEDERSLRPQSMADMVGQREVAKRLQIVVDAAMKRDEPLGHILFDG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTT A  + ++LGVNF+ TSGP I    DL   LTN ++R +LFIDEIHR+   V
Sbjct: 61  PPGLGKTTFATCIPKDLGVNFQLTSGPAIQAPKDLVPYLTNADERSILFIDEIHRIPKAV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE LY AMEDF++D+++GEG +AR++ + +  FTLI ATTR G+L+ PL+DRF +   L+
Sbjct: 121 EEYLYTAMEDFRIDIVLGEGTNARTINLQIKPFTLIGATTRSGMLSAPLRDRFVLREHLD 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY  ++L  IV+R +K  G+ + D+AA EI+ RSR TPR+A   LR VRDFA       +
Sbjct: 181 FYSDDELAEIVRRNSKKLGVTIDDDAALEISKRSRSTPRVANNRLRWVRDFATSRSDGHV 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T E+A AA+   AID +G D+ D  YL+ + R F GGP GIE I+  ++   D + D +E
Sbjct: 241 TLELARAAMEMQAIDDLGLDKQDRNYLSTLVRVFAGGPAGIEAIAHTMNAATDTLADEVE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHL 327
           P++++   + RTPRGR++ P A  HL
Sbjct: 301 PFLLRTELVVRTPRGRVVTPKAMGHL 326


>gi|28572650|ref|NP_789430.1| Holliday junction DNA helicase B [Tropheryma whipplei TW08/27]
 gi|28410782|emb|CAD67168.1| holliday junction DNA helicase RuvB [Tropheryma whipplei TW08/27]
          Length = 331

 Score =  298 bits (762), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 162/319 (50%), Positives = 217/319 (68%), Gaps = 1/319 (0%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
            S E      LRP+ L EF GQ +  + L + I+AAK +    DH L  GPPGLGKTTLA
Sbjct: 2   TSDEKQTEGALRPKLLAEFVGQNKVKNQLALLIQAAKIQGRVTDHALLAGPPGLGKTTLA 61

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            +VA E GV+ R +SGP I  AGDLAALL++L   ++LFIDEIHR+S + EE+LY AMED
Sbjct: 62  MIVAAECGVSIRMSSGPAIQHAGDLAALLSSLLPGELLFIDEIHRMSRVAEEMLYLAMED 121

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F++D+MVG+GP A SV + LS FTL+ ATTR GLL  PL+DRFG   RL+FY  E+L  +
Sbjct: 122 FRIDIMVGKGPGATSVPLELSPFTLVGATTRAGLLPGPLRDRFGFTARLDFYSPEELLQV 181

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI-TREIADAAL 250
           + R A+L  +   D+A   IA+RSRGTPR+A RLLRR RD+  V+++  I ++EIA  A+
Sbjct: 182 LIRSARLMEIQYYDDALESIAVRSRGTPRVANRLLRRTRDYLLVSNSSEILSKEIALKAM 241

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
               +D +G D+LD   L  I   F GGPVGI+T+SA L E  + IE+ IEP++++QG +
Sbjct: 242 DVYEVDSLGLDRLDRAVLHAIFDRFSGGPVGIKTLSAYLGEEAETIENSIEPFLVRQGLL 301

Query: 311 QRTPRGRLLMPIAWQHLGI 329
            RTPRGR +  +A +H+G 
Sbjct: 302 VRTPRGRQITDLARKHMGF 320


>gi|296129642|ref|YP_003636892.1| Holliday junction DNA helicase RuvB [Cellulomonas flavigena DSM
           20109]
 gi|296021457|gb|ADG74693.1| Holliday junction DNA helicase RuvB [Cellulomonas flavigena DSM
           20109]
          Length = 359

 Score =  297 bits (761), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 158/318 (49%), Positives = 218/318 (68%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E A  + LRPR LEEF GQ      L + ++AA  R  A DHVL  GPPGLGKTTLA ++
Sbjct: 34  ERAAEAALRPRRLEEFVGQRVVRDQLSLVLQAALGRGRAPDHVLLSGPPGLGKTTLAMII 93

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A ELG + R TSGP I  AGDLAA+L++LE+ +VLFIDEIHRL+   EE+LY AMEDF++
Sbjct: 94  AAELGASLRVTSGPAIQHAGDLAAVLSSLEEGEVLFIDEIHRLARPAEELLYVAMEDFRV 153

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D++VG+G  A ++ ++L  FT++ ATTR GLL  PL+DRFG    L+FY  ++L+ ++ R
Sbjct: 154 DVVVGKGAGASAIPLSLPPFTVVGATTRAGLLPAPLRDRFGFTGHLDFYADDELERVLVR 213

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A L  + +   AA EIA RSRGTPRIA RLLRRVRD+A+V    T++   A +AL    
Sbjct: 214 SAGLLDVPLEAAAAAEIASRSRGTPRIANRLLRRVRDWAQVRGDGTLSLAAARSALDVYE 273

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D  G D+LD   L  + R FGGGPVG+ T++  + E  + +E + EP+++++G + RT 
Sbjct: 274 VDVRGLDRLDRAVLDALCRRFGGGPVGLTTLAVAVGEEPETVETVAEPFLVREGLVGRTA 333

Query: 315 RGRLLMPIAWQHLGIDIP 332
           RGR+ +P AW+HLG+ +P
Sbjct: 334 RGRVALPPAWEHLGLPVP 351


>gi|309811444|ref|ZP_07705230.1| Holliday junction DNA helicase RuvB [Dermacoccus sp. Ellin185]
 gi|308434591|gb|EFP58437.1| Holliday junction DNA helicase RuvB [Dermacoccus sp. Ellin185]
          Length = 364

 Score =  297 bits (760), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 160/327 (48%), Positives = 218/327 (66%), Gaps = 1/327 (0%)

Query: 7   LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           L+  N ++++  + + LRP+ L +F GQ      L + IEAA+ RA   DH+LF GPPGL
Sbjct: 17  LVDPNGTEDEQQLEAALRPKKLADFPGQPRVREQLSLVIEAARRRATPPDHILFSGPPGL 76

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKT+LA +VA EL    R TSGP I  AGDLAA+L++L + +VLF+DEIHR++   EE+L
Sbjct: 77  GKTSLAMIVASELEAPIRITSGPAIQHAGDLAAILSSLNEGEVLFLDEIHRMARPAEEML 136

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           Y AMEDF++D++VG+GP A ++ + L RFT++ ATTR GLL  PL+DRFG    L++Y+ 
Sbjct: 137 YLAMEDFRVDVIVGKGPGATAIPLELPRFTVVGATTRAGLLPAPLRDRFGFTGHLDYYDA 196

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
            DL  I+ R A L G+  T E   EIA RSRGTPRIA RLLRRVRD+A+V     +    
Sbjct: 197 ADLADILARNADLLGVPATREGITEIAGRSRGTPRIANRLLRRVRDYAQVHGRHVVDLTS 256

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           A AAL    +D  G D+LD   L  + R FGGGPVG+ T++  + E  D +E + EPY++
Sbjct: 257 ARAALELFDVDDDGLDRLDRAVLEALCRRFGGGPVGLSTLAVAVGEEPDTVETVAEPYLV 316

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++G++ RTPRGR   P AW HLG+  P
Sbjct: 317 REGYMIRTPRGRAASPRAWTHLGLRPP 343


>gi|294055485|ref|YP_003549143.1| Holliday junction DNA helicase RuvB [Coraliomargarita akajimensis
           DSM 45221]
 gi|293614818|gb|ADE54973.1| Holliday junction DNA helicase RuvB [Coraliomargarita akajimensis
           DSM 45221]
          Length = 344

 Score =  296 bits (759), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 147/311 (47%), Positives = 213/311 (68%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           S+LRP +  +F GQ +    LKV + AA+ R E L+H+L  GPPGLGKTTL+ ++  E+G
Sbjct: 25  SILRPLSFSDFAGQAKTLERLKVMVGAARDRGEPLNHILLSGPPGLGKTTLSLILGNEMG 84

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
            N   TSGPVI K  DLA LLTNL + D+LFIDEIHR+   VEE LY AMEDF++D+M+ 
Sbjct: 85  KNVSITSGPVIDKPADLAGLLTNLSEGDILFIDEIHRIPKTVEEYLYSAMEDFRIDIMID 144

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199
           +GP+ARSV++NL RFTL+ ATTR+GLLT PL+ RF +  RL++Y+   L+ I++R   + 
Sbjct: 145 QGPNARSVRLNLPRFTLLGATTRLGLLTAPLRSRFTLQTRLSYYDHATLQGIIERTCDIL 204

Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259
            +    + A EIA R+RGTPRIA  L+   RD+A+   +  IT+  A AAL  L ID  G
Sbjct: 205 NVEFEHDGAAEIARRARGTPRIANNLVNFCRDYAQQRGSGIITQASAAAALELLEIDTRG 264

Query: 260 FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLL 319
            D++D + + ++A ++ GGPVG+ T++  + E    +E++ EPY+IQ+G++QRT +GR+L
Sbjct: 265 LDEMDKQVMRVMAESYKGGPVGLGTVAIAVGEEAHTLEEVHEPYLIQEGYLQRTAQGRVL 324

Query: 320 MPIAWQHLGID 330
               W  +G++
Sbjct: 325 TEKGWHVIGLE 335


>gi|119961075|ref|YP_948036.1| Holliday junction DNA helicase RuvB [Arthrobacter aurescens TC1]
 gi|171704630|sp|A1R724|RUVB_ARTAT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|119947934|gb|ABM06845.1| Holliday junction DNA helicase RuvB [Arthrobacter aurescens TC1]
          Length = 358

 Score =  296 bits (758), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 149/311 (47%), Positives = 204/311 (65%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L +F GQ      L + +EA+K R  + DHVL  GPPGLGKTTLA ++A E+   
Sbjct: 22  LRPKNLHDFVGQHRVRKQLALVLEASKMRGRSADHVLMSGPPGLGKTTLAMIIAAEMNAP 81

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R +SGP I  AGDLAA+L++L + +VLF+DEIHR+S   EE+LY AMEDF++D++VG+G
Sbjct: 82  LRISSGPAIQHAGDLAAILSSLSEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDIVVGKG 141

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
             A ++ + L  FTL+ ATTR GLL  PL+DRFG    L FY + +L+ +++R A L  L
Sbjct: 142 AGATAIPLELPPFTLVGATTRAGLLPGPLRDRFGFTGHLEFYSVAELELVLRRSAGLLDL 201

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            V      EIA RSRGTPRIA RLLRRVRD+A V   + I    A AAL    +D+ G D
Sbjct: 202 KVNSAGFTEIAGRSRGTPRIANRLLRRVRDWALVHGIEQIDARSASAALDMYEVDERGLD 261

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           +LD   L  +   F GGPVG+ T++  + E  + +E + EP+++++G + RTPRGR+ M 
Sbjct: 262 RLDRSVLEALITKFNGGPVGLSTLAIAVGEEPETVETVAEPFLVREGLLGRTPRGRIAMA 321

Query: 322 IAWQHLGIDIP 332
            AW HLG  +P
Sbjct: 322 SAWTHLGYAVP 332


>gi|29840168|ref|NP_829274.1| Holliday junction DNA helicase B [Chlamydophila caviae GPIC]
 gi|33301623|sp|Q823K4|RUVB_CHLCV RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|29834516|gb|AAP05152.1| Holliday junction DNA helicase RuvB [Chlamydophila caviae GPIC]
          Length = 337

 Score =  296 bits (757), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 145/310 (46%), Positives = 205/310 (66%), Gaps = 1/310 (0%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           DISL RP+ L EF GQ +    L++F+ AA  R E   H LF GPPGLGKT+LA +VA  
Sbjct: 15  DISL-RPKGLREFCGQKQLTERLELFLHAAVQRGEVPGHCLFFGPPGLGKTSLAHIVAHT 73

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           +G      SGP + K  DL  LLT+L++ DV FIDEIHR+  + EE LY AMED+++D+ 
Sbjct: 74  VGKGLVVASGPQLVKPSDLLGLLTSLQEGDVFFIDEIHRMGKVAEEYLYSAMEDYKIDIT 133

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
           +  GP ARSV ++L+ F+L+ ATTR G+L+ PL+ RF    R+++Y  EDL TI++R + 
Sbjct: 134 IDSGPGARSVSVDLAPFSLVGATTRSGMLSEPLRARFSFTGRMSYYSDEDLTTILKRSSN 193

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257
           L G+     A  EIA RSRGTPR+A  LLR VRDFA++     I  ++A+ AL  L ID 
Sbjct: 194 LLGIDADTAALYEIARRSRGTPRLANNLLRWVRDFAQMREGNCINSDVAEKALAMLLIDD 253

Query: 258 MGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317
            G +++D++ LT I   + GGPVGI+T+S  + E    +ED+ EP++I +G +++T RGR
Sbjct: 254 WGLNEIDIKLLTTIIDYYQGGPVGIKTLSVAVGEDIKTLEDVYEPFLILKGLLKKTSRGR 313

Query: 318 LLMPIAWQHL 327
           ++  IA+ HL
Sbjct: 314 MVTQIAYNHL 323


>gi|147919261|ref|YP_687003.1| Holliday junction DNA helicase RuvB [uncultured methanogenic
           archaeon RC-I]
 gi|110622399|emb|CAJ37677.1| holliday junction resolvasome, helicase subunit [uncultured
           methanogenic archaeon RC-I]
          Length = 337

 Score =  296 bits (757), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 143/247 (57%), Positives = 184/247 (74%)

Query: 81  NFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
            F S  GP I +AGDLAA+LTNL++ DVLFIDEIHRLS +VEEILY AMEDF++D+++G+
Sbjct: 85  TFASPQGPAIERAGDLAAILTNLKEGDVLFIDEIHRLSHVVEEILYSAMEDFEIDIIIGK 144

Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
           GPSARS+++ L RFTL+ ATTR G+L+ PL+DRFG+ +R  FY  EDLKTI+ R AK+  
Sbjct: 145 GPSARSIRLELPRFTLVGATTRAGMLSPPLRDRFGMSLRFEFYTPEDLKTIIDRSAKILN 204

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGF 260
           + +T + + EIA RSRGTPRIA RLLRRVRDFA V     I   IA  +L +L +D +G 
Sbjct: 205 MEITPDGSMEIAARSRGTPRIANRLLRRVRDFAHVEKKTVIDTGIARKSLDKLDVDFLGL 264

Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320
           D +D R L  I +++GGGPVG ET++  +SE  D IED+ EPY+IQ GFI RTPRGR+  
Sbjct: 265 DAMDRRILKTIIKDYGGGPVGAETLAVSVSEETDTIEDVYEPYLIQIGFINRTPRGRMAT 324

Query: 321 PIAWQHL 327
           P A +HL
Sbjct: 325 PAAVEHL 331


>gi|227496220|ref|ZP_03926519.1| crossover junction endoribonuclease subunit B [Actinomyces
           urogenitalis DSM 15434]
 gi|226834251|gb|EEH66634.1| crossover junction endoribonuclease subunit B [Actinomyces
           urogenitalis DSM 15434]
          Length = 347

 Score =  295 bits (756), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 155/320 (48%), Positives = 211/320 (65%), Gaps = 1/320 (0%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E A  + LRP+ LE+F GQ      L V + AA +R    DHVL  GPPGLGKTTLA ++
Sbjct: 22  ERAAEAALRPKRLEDFVGQEVVRGQLSVVLRAALSRGTTPDHVLLSGPPGLGKTTLAMII 81

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A E+  + R TSGP I  AGDLAA+L++LE+ DVLFIDEIHRL+   EE+LY AMED+++
Sbjct: 82  AAEVEGSLRLTSGPAIQHAGDLAAILSSLEEGDVLFIDEIHRLARTAEEMLYLAMEDYRV 141

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D++VG+GP A S+ ++L  FT++ ATTR GLL  PL+DRFG    L +Y   +L  I+ R
Sbjct: 142 DVVVGKGPGATSIPLSLPPFTVVGATTRAGLLPAPLRDRFGFTGHLEYYGPAELSRILAR 201

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV-AHAKTITREIADAALLRL 253
            A L G+ +  +A  E+A RSRGTPRIA RLLRRV+D+AEV      +  E A AAL   
Sbjct: 202 SAGLLGVQLEAQAGAELARRSRGTPRIANRLLRRVQDWAEVHGTPGYLDLEAARAALEVF 261

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D +G D+LD   L  +   FGGGPVG+ T++  + E  + +E + EPY++++G + RT
Sbjct: 262 EVDALGLDRLDRAVLEALCTRFGGGPVGLTTLAVSVGEEPETVETVAEPYLVREGLVVRT 321

Query: 314 PRGRLLMPIAWQHLGIDIPH 333
           PRGR     A++HLG+  P 
Sbjct: 322 PRGRSATAAAYEHLGLQPPE 341


>gi|260434540|ref|ZP_05788510.1| holliday junction DNA helicase RuvB [Synechococcus sp. WH 8109]
 gi|260412414|gb|EEX05710.1| holliday junction DNA helicase RuvB [Synechococcus sp. WH 8109]
          Length = 348

 Score =  295 bits (756), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 156/308 (50%), Positives = 206/308 (66%), Gaps = 2/308 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L+++ GQ E    L + +EAA  R +ALDHVL  GPPGLGKTT+A V+A E+GV 
Sbjct: 37  LRPQFLDDYIGQSELKQVLGIAVEAALGRGDALDHVLLYGPPGLGKTTMAMVLAEEMGVQ 96

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TS P + +  D+  LL NL+ RD+LFIDEIHRLS + EE+LYPAMED +LDL VG+G
Sbjct: 97  CKVTSAPALERPRDIVGLLVNLQPRDLLFIDEIHRLSRVAEELLYPAMEDRRLDLTVGKG 156

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            +ARS  ++L  FTL+ ATTR G L++PL+DRFG+  RL FY   DL+ IV R A L G+
Sbjct: 157 STARSRSLDLPPFTLVGATTRAGSLSSPLRDRFGLIQRLEFYGQGDLEAIVDRTAGLIGV 216

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV--AHAKTITREIADAALLRLAIDKMG 259
           A+T EA   IA   RGTPRIA RLLRRVRD A V       I + +   AL    +D  G
Sbjct: 217 ALTPEARSSIAASCRGTPRIANRLLRRVRDVASVRGGGGGVIDQALVGDALSLHRVDHRG 276

Query: 260 FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLL 319
            D  D R L ++  + GGGPVG+ET++A L +    +E ++EP+++QQG + RTPRGR++
Sbjct: 277 LDASDRRLLQLLIDHHGGGPVGLETLAAALGDDPVTLETVVEPFLLQQGLLMRTPRGRMV 336

Query: 320 MPIAWQHL 327
              A  HL
Sbjct: 337 TDAARSHL 344


>gi|149178845|ref|ZP_01857425.1| Holliday junction DNA helicase B [Planctomyces maris DSM 8797]
 gi|148842320|gb|EDL56703.1| Holliday junction DNA helicase B [Planctomyces maris DSM 8797]
          Length = 393

 Score =  295 bits (755), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 150/311 (48%), Positives = 203/311 (65%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E  GQ      L+VF++A + R E L H+L  GPPGLGKTTLA V+ RELG  
Sbjct: 76  LRPQRLSEVVGQRAVVERLEVFLDATRKRNEPLGHLLLDGPPGLGKTTLASVLPRELGTE 135

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGP ++   DL   LTN      LFIDEIHR+   VEE +YPAMEDF++D+ +GEG
Sbjct: 136 LQITSGPSLSAPKDLLPFLTNASHGSFLFIDEIHRMPATVEEFIYPAMEDFRVDITLGEG 195

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            +AR+V + L +FT+I ATTR G+LT PL+DRF     L+FYE ++L  IV+R A+    
Sbjct: 196 LNARTVNMKLQKFTVIGATTRSGMLTAPLRDRFVRREHLDFYEDQELIEIVRRNARKLKT 255

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +TD+AA EIA RSRGTPR A  LLR  RDFA       IT E+   A   L ID++G +
Sbjct: 256 PITDDAAFEIARRSRGTPRKANNLLRWARDFATSKADGKITNEVVKRAFEMLEIDQLGLE 315

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           + D RYL  + + F GGP G++ +   L+ P D +ED +EP++++ GFIQR+PRGR++  
Sbjct: 316 RQDRRYLEALVKTFSGGPAGVQALGHTLNIPADTLEDEVEPFLLRCGFIQRSPRGRIVTM 375

Query: 322 IAWQHLGIDIP 332
            A +HL ++ P
Sbjct: 376 AAMEHLNLNPP 386


>gi|329942753|ref|ZP_08291532.1| holliday junction DNA helicase RuvB [Chlamydophila psittaci Cal10]
 gi|332287350|ref|YP_004422251.1| holliday junction DNA helicase [Chlamydophila psittaci 6BC]
 gi|313847933|emb|CBY16928.1| holliday junction DNA helicase [Chlamydophila psittaci RD1]
 gi|325507310|gb|ADZ18948.1| holliday junction DNA helicase [Chlamydophila psittaci 6BC]
 gi|328815013|gb|EGF85002.1| holliday junction DNA helicase RuvB [Chlamydophila psittaci Cal10]
 gi|328914594|gb|AEB55427.1| Holliday junction DNA helicase RuvB [Chlamydophila psittaci 6BC]
          Length = 337

 Score =  294 bits (753), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 144/310 (46%), Positives = 207/310 (66%), Gaps = 1/310 (0%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           D+SL RP+ L+EF GQ +    L++F+ AA  R E   H LF GPPGLGKT+LA +VA  
Sbjct: 15  DVSL-RPKGLKEFCGQAQLTERLELFLNAAIQRGEVPGHCLFFGPPGLGKTSLAHIVANT 73

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           +G      SGP + K  DL  LLT+L++ DV FIDEIHR+  + EE LY AMED+++D+ 
Sbjct: 74  VGKGLIVASGPQLVKPSDLLGLLTSLQEGDVFFIDEIHRMGKVAEEYLYSAMEDYKIDIT 133

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
           +  GP ARSV I+L+ F+L+ ATTR G+L+ PL+ RF    R+++Y  EDL TI++R + 
Sbjct: 134 IDSGPGARSVSIDLAPFSLVGATTRSGMLSEPLRARFSFTGRVSYYSDEDLATILRRSSN 193

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257
           L G+     A  EIA RSRGTPR+A  LLR VRDFA++     I  ++A+ AL  L ID+
Sbjct: 194 LLGIDADPSALYEIARRSRGTPRLANNLLRWVRDFAQMREGNCINSDVAEKALAMLLIDE 253

Query: 258 MGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317
            G +++D++ LT I   + GGPVGI+T+S  + E    +ED+ EP++I +G +++T RGR
Sbjct: 254 WGLNEIDIKLLTTIMDYYQGGPVGIKTLSVAVGEDIRTLEDVYEPFLILKGLLKKTSRGR 313

Query: 318 LLMPIAWQHL 327
           ++  +A+ HL
Sbjct: 314 MVTQLAYNHL 323


>gi|62185021|ref|YP_219806.1| Holliday junction DNA helicase B [Chlamydophila abortus S26/3]
 gi|81312811|sp|Q5L686|RUVB_CHLAB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|62148088|emb|CAH63845.1| holliday junction DNA helicase [Chlamydophila abortus S26/3]
          Length = 337

 Score =  294 bits (753), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 143/310 (46%), Positives = 206/310 (66%), Gaps = 1/310 (0%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           D+SL RP+ L+EF GQ +    L++F+ AA  R E   H LF GPPGLGKT+LA +VA  
Sbjct: 15  DVSL-RPKGLKEFCGQAQLTERLELFLNAAIQRGEVPGHCLFFGPPGLGKTSLAHIVANT 73

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           +G      SGP + K  DL  LLT+L++ DV FIDEIHR+  + EE LY AMED+++D+ 
Sbjct: 74  VGKGLLVASGPQLVKPSDLLGLLTSLQEGDVFFIDEIHRMGKVAEEYLYSAMEDYKIDIT 133

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
           +  GP ARSV ++L+ F+L+ ATTR G+L+ PL+ RF    R+ +Y  EDL TI++R + 
Sbjct: 134 IDSGPGARSVSVDLAPFSLVGATTRSGMLSEPLRARFSFTGRVAYYSDEDLATILRRSSN 193

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257
           L G+     A  EIA RSRGTPR+A  LLR VRDFA++     I  ++A+ AL  L ID+
Sbjct: 194 LLGIDADASALYEIARRSRGTPRLANNLLRWVRDFAQMREGNCINSDVAEKALAMLLIDE 253

Query: 258 MGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317
            G +++D++ LT I   + GGPVGI+T+S  + E    +ED+ EP++I +G +++T RGR
Sbjct: 254 WGLNEIDIKLLTTIMNYYQGGPVGIKTLSVAVGEDVRTLEDVYEPFLILKGLLKKTSRGR 313

Query: 318 LLMPIAWQHL 327
           ++  +A+ HL
Sbjct: 314 MVTQLAYNHL 323


>gi|315452845|ref|YP_004073115.1| Holliday junction ATP-dependent DNA helicase [Helicobacter felis
           ATCC 49179]
 gi|315131897|emb|CBY82525.1| Holliday junction ATP-dependent DNA helicase [Helicobacter felis
           ATCC 49179]
          Length = 332

 Score =  294 bits (752), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 156/311 (50%), Positives = 216/311 (69%), Gaps = 1/311 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP   E++ GQ +    L+V I A   R + LDHVLF GPPGLGKTTL+ ++A+EL  N
Sbjct: 20  LRPSLWEDYIGQEQIKKLLQVSISATLKRQDTLDHVLFFGPPGLGKTTLSHLIAKELNAN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + T+ P+I K GDLAALLTNL  +D+LFIDEIHRLS  +EE+LYPAMEDF+LD+++G  
Sbjct: 80  IKVTTAPMIEKTGDLAALLTNLNPKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSK 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            +A+++KI+L+ FTLI ATTR GLL+NPL++RFG+  R+ FY IE+L TI+ R +     
Sbjct: 140 AAAQTIKIDLAPFTLIGATTRAGLLSNPLRERFGMHFRMQFYSIEELATIITRASVKLQK 199

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + DEA+ EIA RSRGTPRIA RLLRRVRDFA+ A+   I+ +    AL  L ++  GFD
Sbjct: 200 EIEDEASIEIAKRSRGTPRIALRLLRRVRDFADHANELCISLQTTLFALEELGVNAHGFD 259

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            LDL YL ++A       +G+ TI+A L E    IE++IEP+++  G+++RT +GR+   
Sbjct: 260 ALDLLYLNLLANA-KNKALGLNTIAASLHEDESTIEEVIEPFLLANGYLERTAKGRIATL 318

Query: 322 IAWQHLGIDIP 332
             ++ L +  P
Sbjct: 319 KTYETLKLTCP 329


>gi|148241223|ref|YP_001226380.1| Holliday junction DNA helicase RuvB [Synechococcus sp. RCC307]
 gi|166231565|sp|A5GQ68|RUVB_SYNR3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|147849533|emb|CAK27027.1| Holliday junction DNA helicase [Synechococcus sp. RCC307]
          Length = 344

 Score =  294 bits (752), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 157/306 (51%), Positives = 208/306 (67%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPR L ++ GQ E    L + +EA + R +ALDHVL  GPPGLGKTT+A V+A ELGV+
Sbjct: 36  LRPRRLADYIGQSELKQVLGIAVEATRLRNDALDHVLLYGPPGLGKTTMALVLAEELGVS 95

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R  S P + +  D+  LL NL+ R++LFIDEIHRL+ + EE+LYPAMEDF+LDL VG G
Sbjct: 96  CRIASAPALERPRDIVGLLMNLQPRELLFIDEIHRLNRVAEELLYPAMEDFRLDLTVGAG 155

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+AR+  + L  FTL+ ATT+ G L++PL+DRFG+  RL FY   DL+ IV R A+L  L
Sbjct: 156 PAARTRSLELPPFTLVGATTKAGSLSSPLRDRFGLIQRLEFYSCSDLEAIVSRSAQLLQL 215

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  EAA EIA R RGTPRIA RLLRRVRDFA V     +   +   AL    +D  G D
Sbjct: 216 ELAAEAAAEIARRCRGTPRIANRLLRRVRDFASVRGIAAVGAPVVVEALAMHRVDGRGLD 275

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             D R L+++  ++GGGP G++T++A L E  D +E ++EP+++Q GF+QRTPRGR+L  
Sbjct: 276 PSDRRLLSLLETSYGGGPAGLDTLAAALGEDPDTLEAVVEPFLLQLGFLQRTPRGRVLTD 335

Query: 322 IAWQHL 327
               HL
Sbjct: 336 AGRAHL 341


>gi|89898409|ref|YP_515519.1| Holliday junction DNA helicase RuvB [Chlamydophila felis Fe/C-56]
 gi|123735909|sp|Q254B4|RUVB_CHLFF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|89331781|dbj|BAE81374.1| holliday junction DNA helicase [Chlamydophila felis Fe/C-56]
          Length = 337

 Score =  293 bits (751), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 141/306 (46%), Positives = 203/306 (66%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L EF GQ +    L++F+ AA  R E   H LF GPPGLGKT+LA +VAR +G  
Sbjct: 18  LRPKGLREFCGQAQLTERLELFLSAALQRGEVPGHCLFFGPPGLGKTSLAHIVARTVGKG 77

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
               SGP + K  DL  LLT+L++ DV FIDEIHR+  + EE LY AMED+++D+ +  G
Sbjct: 78  LVVASGPQLVKPSDLLGLLTSLQEGDVFFIDEIHRMGKVAEEYLYSAMEDYKIDITIDSG 137

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P ARS+ ++L+ F+L+ ATTR G+L+ PL+ RF    R+++Y  EDL TI++R + L G+
Sbjct: 138 PGARSISVDLAPFSLVGATTRSGMLSEPLRARFSFSGRVSYYSDEDLATILKRSSNLLGI 197

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
                A  EIA RSRGTPR+A  LLR VRDFA++     I  ++A+ AL  L ID  G +
Sbjct: 198 DADAAALYEIARRSRGTPRLANNLLRWVRDFAQMREGNRINSDVAEKALSMLLIDDWGLN 257

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           ++D++ LT I   + GGPVGI+T+S  + E    +ED+ EP++I +G +++T RGR++  
Sbjct: 258 EIDIKLLTTIIDYYQGGPVGIKTLSVAVGEDIKTLEDVYEPFLILKGLLKKTSRGRMVTQ 317

Query: 322 IAWQHL 327
           +A+ HL
Sbjct: 318 LAYNHL 323


>gi|203287495|ref|YP_002222510.1| Holliday junction DNA helicase [Borrelia recurrentis A1]
 gi|201084715|gb|ACH94289.1| Holliday junction DNA helicase [Borrelia recurrentis A1]
          Length = 340

 Score =  293 bits (751), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 144/309 (46%), Positives = 203/309 (65%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP  L++F+GQ     NL +FI+A++ R EALDHV   GPPGLGKTTLA ++A E+   
Sbjct: 21  LRPEFLKDFSGQSHIKDNLDIFIKASRDRNEALDHVFLSGPPGLGKTTLASIIALEMNTT 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TS P   K  D+  +L  L D+ VLFIDEIHRL   +EE+LY AMED+++D +VG+G
Sbjct: 81  IKITSAPAFEKPKDIVGILMTLNDKSVLFIDEIHRLKPAIEEMLYIAMEDYKIDCIVGQG 140

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
             AR+V++++ +FTLI ATT+ G + +PL  RFGI  R + Y  ++L  I++R A +  +
Sbjct: 141 AVARTVRMSIPKFTLIGATTKPGKVASPLYARFGIVFRFDLYNEDELSKIIKRSAFILNV 200

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + D+AA  +A  SRGTPR+A +LLRR+RDFA+V     IT ++  A L  L ID  G D
Sbjct: 201 KLNDKAALLLAKSSRGTPRMANKLLRRMRDFAQVGGYDLITEDVVTAGLEMLKIDHEGLD 260

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           + D   L  +   F GGPVGIET++  + E  D++ED  EPY+I +GFI+RT RGR    
Sbjct: 261 EQDRNILKNLILKFRGGPVGIETLAIAVGETADSLEDFYEPYLILRGFIERTNRGRRATD 320

Query: 322 IAWQHLGID 330
            A+ HL ++
Sbjct: 321 FAYLHLNLN 329


>gi|78211670|ref|YP_380449.1| Holliday junction DNA helicase B [Synechococcus sp. CC9605]
 gi|97190404|sp|Q3AND8|RUVB_SYNSC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|78196129|gb|ABB33894.1| Holliday junction DNA helicase RuvB [Synechococcus sp. CC9605]
          Length = 348

 Score =  293 bits (751), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 152/308 (49%), Positives = 207/308 (67%), Gaps = 2/308 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L+++ GQ E    L + ++AA  R +ALDHVL  GPPGLGKTT+A V+A E+GV+
Sbjct: 37  LRPQRLDDYIGQSELKQVLGIAVQAALGRGDALDHVLLYGPPGLGKTTMAMVLAEEMGVH 96

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TS P + +  D+  LL NL+ RD+LFIDEIHRLS + EE+LYPAMED +LDL VG+G
Sbjct: 97  CKVTSAPALERPRDIVGLLVNLQPRDLLFIDEIHRLSRVAEELLYPAMEDRRLDLTVGKG 156

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            +AR+  ++L  FTL+ ATTR G L++PL+DRFG+  RL FY   DL+ IV+R A L G+
Sbjct: 157 STARTRSLDLPPFTLVGATTRAGSLSSPLRDRFGLIQRLEFYGQGDLEAIVERTAGLIGV 216

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV--AHAKTITREIADAALLRLAIDKMG 259
            +T +A   IA   RGTPRIA RLLRRVRD A V       I + +   AL    +D  G
Sbjct: 217 TLTPQARSSIAASCRGTPRIANRLLRRVRDVASVRGGGGGAINQALVGEALSLHRVDHRG 276

Query: 260 FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLL 319
            D  D R L ++  + GGGPVG+ET++A L +    +E ++EP+++QQG + RTPRGR++
Sbjct: 277 LDASDRRLLQLLIDHHGGGPVGLETLAAALGDDPVTLETVVEPFLMQQGLLMRTPRGRMV 336

Query: 320 MPIAWQHL 327
              A  HL
Sbjct: 337 TDAARSHL 344


>gi|206900986|ref|YP_002251319.1| holliday junction DNA helicase RuvB [Dictyoglomus thermophilum
           H-6-12]
 gi|206740089|gb|ACI19147.1| holliday junction DNA helicase RuvB [Dictyoglomus thermophilum
           H-6-12]
          Length = 332

 Score =  293 bits (750), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 146/316 (46%), Positives = 210/316 (66%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           V +E A  + LRP++L EF GQ +    L + I AAK R EA+DH+LFVGPPG+GKTTLA
Sbjct: 10  VQREPALDNALRPKSLSEFIGQEKIKERLALIINAAKKREEAIDHILFVGPPGVGKTTLA 69

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            ++A E     +  S P I K+GDL ALLT +E++ V+FIDEIHRLS  +EEILY A+ED
Sbjct: 70  LIIAEEQNTQIKMISAPSIQKSGDLIALLTGIEEKGVIFIDEIHRLSPSLEEILYSALED 129

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
             + ++ G+GP  + + + L  FTLI ATTR  LL+ PL+DRFG    L+FY  E++  I
Sbjct: 130 GSISIVAGKGPGGKVLSLKLPPFTLIGATTRPALLSTPLRDRFGFIATLDFYTHEEMVKI 189

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           ++R  K+ GL ++ E+  E+A RSRG PRIA R+L+R++D+ ++   K I        L 
Sbjct: 190 IERSQKILGLNLSYESIYEVAKRSRGVPRIANRILKRIKDYVDLRDNKNIDLTETKKVLE 249

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            + ID+ G D+LD + L  +   F GGPVG++T++A L+E  + IE + EPY+++ GFIQ
Sbjct: 250 LIGIDENGLDELDRKILFTLKDKFSGGPVGLKTLAAVLNESPETIESIYEPYLLRIGFIQ 309

Query: 312 RTPRGRLLMPIAWQHL 327
           RT RGR++ P+   H+
Sbjct: 310 RTSRGRVITPLGLAHI 325


>gi|203283952|ref|YP_002221692.1| Holliday junction DNA helicase [Borrelia duttonii Ly]
 gi|201083395|gb|ACH92986.1| Holliday junction DNA helicase [Borrelia duttonii Ly]
          Length = 340

 Score =  293 bits (750), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 143/309 (46%), Positives = 203/309 (65%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP  L++F+GQ     NL +FI+A++ R EALDHV   GPPGLGKTTLA ++A E+   
Sbjct: 21  LRPEFLKDFSGQSHIKDNLDIFIKASRDRNEALDHVFLSGPPGLGKTTLASIIALEMNTT 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TS P   K  D+  +L  L D+ VLFIDEIHRL   +EE+LY AMED+++D +VG+G
Sbjct: 81  IKITSAPAFEKPKDIVGILMTLNDKSVLFIDEIHRLKPAIEEMLYIAMEDYKIDCIVGQG 140

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
             AR+V++++ +FTLI ATT+ G + +PL  RFGI  R + Y  ++L  I++R A +  +
Sbjct: 141 AVARTVRMSIPKFTLIGATTKPGKVASPLYARFGIVFRFDLYNEDELSKIIKRSAFILNV 200

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + D+AA  +A  SRGTPR+A +LLRR+RDFA+V     IT ++  A L  L ID  G D
Sbjct: 201 KLNDKAALLLAKSSRGTPRMANKLLRRMRDFAQVGGYDLITEDVVTAGLEMLKIDHEGLD 260

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           + D   L  +   F GGPVGIET++  + E  D++ED  EPY++ +GFI+RT RGR    
Sbjct: 261 EQDRNILKNLILKFRGGPVGIETLAIAVGETADSLEDFYEPYLVLRGFIERTNRGRRATD 320

Query: 322 IAWQHLGID 330
            A+ HL ++
Sbjct: 321 FAYLHLNLN 329


>gi|33241224|ref|NP_876166.1| Holliday junction DNA helicase B [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|44888417|sp|Q7V9Q4|RUVB_PROMA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|33238754|gb|AAQ00819.1| Holliday junction resolvasome helicase subunit [Prochlorococcus
           marinus subsp. marinus str. CCMP1375]
          Length = 356

 Score =  293 bits (749), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 160/319 (50%), Positives = 219/319 (68%), Gaps = 5/319 (1%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
            V +ED+    LRP+  +EF GQ      L + ++AA +R EALDHVL  GPPGLGKTT+
Sbjct: 33  KVRKEDS----LRPKCWDEFIGQSALKEVLGISVKAALSRKEALDHVLLYGPPGLGKTTM 88

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           A V+  ELGV  R TS P + +  D+  LL NLE  ++LF+DEIHRLS + EE+LYPA+E
Sbjct: 89  ALVLGNELGVKCRITSAPALERPRDIIGLLLNLEPNELLFVDEIHRLSKVAEELLYPALE 148

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           DF++DL VG+G +AR+ +INL RFTL+ ATT+   +++PL+DRFGI  RLNFY I DL  
Sbjct: 149 DFRIDLTVGKGTTARTREINLPRFTLVGATTKPASISSPLRDRFGITQRLNFYSISDLNR 208

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA-KTITREIADAA 249
           I+QR A L GL++T +A  EIA R RGTPRIA RLLRRVRD+A V +  K + + + D +
Sbjct: 209 IIQRAADLFGLSLTGDAGLEIARRCRGTPRIANRLLRRVRDYATVQNQLKLVDKSLVDKS 268

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           L    +D+ G DQ D R+L  I     GGPVG++T++A L E    +E ++EP+++Q GF
Sbjct: 269 LTLHQVDECGLDQSDRRFLLFIIDVHNGGPVGLDTLAAALGEEAATLESVVEPFLLQIGF 328

Query: 310 IQRTPRGRLLMPIAWQHLG 328
           ++RT RGR++   A +HL 
Sbjct: 329 LKRTSRGRVITQAALEHLN 347


>gi|187917905|ref|YP_001883468.1| Holliday junction DNA helicase RuvB [Borrelia hermsii DAH]
 gi|238689304|sp|B2S1L1|RUVB_BORHD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|119860753|gb|AAX16548.1| Holliday junction DNA helicase RuvB [Borrelia hermsii DAH]
          Length = 352

 Score =  293 bits (749), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 146/322 (45%), Positives = 206/322 (63%), Gaps = 7/322 (2%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           D+  L  RN S+       LRP+ L +F GQ     NL VFI+A++ R EALDHV   GP
Sbjct: 13  DKNFLYDRNESE-------LRPKFLRDFAGQSHIKENLSVFIKASRDRNEALDHVFLSGP 65

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++A E+    + TS P + K  D+  +LT L+D+ +LFIDE+HRL  ++E
Sbjct: 66  PGLGKTTLASIIAVEMNTTIKVTSAPALDKPKDIVGILTTLDDKSILFIDEMHRLKPVIE 125

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LY AMED+++D ++G+GP+AR+V++++ +FTLI ATT+ G + +PL  RFGI  R   
Sbjct: 126 EMLYIAMEDYKIDWIIGQGPAARTVRMSIPKFTLIGATTKPGKVASPLYARFGIVSRFEL 185

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  ++L  I+QR + +  +   D+AA  +A  SRGTPR+A RLLRR+RDFA+V     IT
Sbjct: 186 YSEDELVKIIQRNSIILNVKFEDKAAWLLAKSSRGTPRVANRLLRRMRDFAQVGGYDLIT 245

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             I    L  L ID  G D+ D   L  +   F GGPVG+ET++  + E  D++ED  EP
Sbjct: 246 ENIVSDGLEMLKIDHEGLDEQDRNILRSLILKFKGGPVGVETLAISVGETADSLEDFYEP 305

Query: 303 YMIQQGFIQRTPRGRLLMPIAW 324
           Y+I +G I+RT RGR     A+
Sbjct: 306 YLILKGLIERTSRGRKATDFAY 327


>gi|283782242|ref|YP_003372997.1| Holliday junction DNA helicase RuvB [Pirellula staleyi DSM 6068]
 gi|283440695|gb|ADB19137.1| Holliday junction DNA helicase RuvB [Pirellula staleyi DSM 6068]
          Length = 352

 Score =  293 bits (749), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 150/326 (46%), Positives = 211/326 (64%), Gaps = 1/326 (0%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M RE +LS  + + + D  L RP+ + +  GQ E    L++ ++AA+ R++ L H+LF G
Sbjct: 22  MPREAILSAEIPEPEEDRDL-RPQRMADMVGQQEVIERLRIVVDAARKRSDTLGHILFDG 80

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTT A  + REL V   ++SGP +    DL   LTNLE   VLFIDEIHR+   V
Sbjct: 81  PPGLGKTTFANCIPRELNVPLVTSSGPALKAPKDLIPYLTNLEPNSVLFIDEIHRMPKPV 140

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE LY AMEDF+LD+++GEG +AR++ + L  FTLI ATTR G+L++PL+DRF +   L 
Sbjct: 141 EEYLYTAMEDFRLDIVLGEGVNARTINLKLKPFTLIGATTRAGMLSSPLRDRFAVREHLG 200

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY +++L  IV+R A      +  +AA EIA RSRGTPRIA   LR VRD+AE   +  I
Sbjct: 201 FYTVDELTEIVRRSAAKLSCNIAGDAAIEIARRSRGTPRIANHRLRWVRDYAEAKSSGQI 260

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T  +A AAL    ID +G D+ D  YL  I R F GGPVG+++++  ++   D + D +E
Sbjct: 261 TVAVAQAALAMSGIDILGLDKQDRAYLETILRVFSGGPVGVDSVAHTMNLATDTLSDEVE 320

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHL 327
           P++++   I R+PRGR+L   A++HL
Sbjct: 321 PFLLRCELIVRSPRGRMLTSKAFEHL 346


>gi|217967993|ref|YP_002353499.1| Holliday junction DNA helicase RuvB [Dictyoglomus turgidum DSM
           6724]
 gi|217337092|gb|ACK42885.1| Holliday junction DNA helicase RuvB [Dictyoglomus turgidum DSM
           6724]
          Length = 334

 Score =  293 bits (749), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 145/316 (45%), Positives = 210/316 (66%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           V +E A  ++LRP+ L +F GQ      L + I AAK R EA+DH+LFVGPPG+GKTTLA
Sbjct: 12  VQREPALDNVLRPKNLSDFIGQERIKDRLALIINAAKKREEAVDHILFVGPPGVGKTTLA 71

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            ++A E     +  S P + K+GDL ALLT++E+R ++FIDEIHRL+  +EEILY A+ED
Sbjct: 72  LIIAEEQNAPIKMVSAPSLQKSGDLIALLTSVEERGIIFIDEIHRLNPSLEEILYSALED 131

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
             + ++ G+GP  + + I L  FTL+ ATTR  LL++PL+DRFG    L+FY  E++  I
Sbjct: 132 RSVSIVTGKGPGGKVLSIKLPPFTLVGATTRPALLSSPLRDRFGFIANLDFYTHEEMVKI 191

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           ++R  K+ GL +  E+  EIA RSRG PRIA R+L+R++D+ ++   K I  E     L 
Sbjct: 192 IERSQKILGLNLPYESIIEIAKRSRGVPRIANRILKRIKDYIDLKEEKNINLEETKRVLE 251

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            + ID+ G D+LD + L  +   F GGPVG++ ++A L+E  D IE + EPY+++ GFIQ
Sbjct: 252 LIGIDEKGLDELDRKILFALRDKFSGGPVGLKALAAVLNESPDTIESIYEPYLLRIGFIQ 311

Query: 312 RTPRGRLLMPIAWQHL 327
           RT RGR++ P+   H+
Sbjct: 312 RTSRGRIITPLGLAHI 327


>gi|16331552|ref|NP_442280.1| Holliday junction DNA helicase RuvB [Synechocystis sp. PCC 6803]
 gi|2498877|sp|Q57396|RUVB_SYNY3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|1001619|dbj|BAA10350.1| Holliday junction DNA helicase; RuvB [Synechocystis sp. PCC 6803]
 gi|1256590|gb|AAA96396.1| RuvB [Synechocystis sp. PCC 6803]
          Length = 361

 Score =  292 bits (748), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 148/324 (45%), Positives = 215/324 (66%), Gaps = 3/324 (0%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           S  + Q++A    LRP+ L ++ GQ +    L++ I+AA+ R EA+DH+L  GPPGLGKT
Sbjct: 32  SPELEQQEAS---LRPQRLADYIGQRDLKEVLRIAIQAAQGRQEAIDHLLLYGPPGLGKT 88

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           TLA ++A E+ V  + T+ P + +  D+  LL  L+  D+LFIDEIHRL+ + EE+LYPA
Sbjct: 89  TLALILAEEMQVRCKITAAPALERPRDITGLLLALQPGDILFIDEIHRLNRLTEELLYPA 148

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           MEDF+LD+ +G+G SA+   + L+ FTL+ ATT+VG LT+PL+DRFG+  RL FYE+++L
Sbjct: 149 MEDFRLDITMGKGQSAKVRSLKLAHFTLVGATTKVGSLTSPLRDRFGLIQRLRFYEVDEL 208

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           + I+ R A +  ++++   A  IAMR+RGTPRIA RLL+RVRD+A+V     I   +A  
Sbjct: 209 QQIILRTAGILSVSISPTGAEAIAMRARGTPRIANRLLKRVRDYAQVKQQPEIDPALASE 268

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL    +DK G D  D   L  +   F GGP G+E I+A   E    IE++ EPY++Q G
Sbjct: 269 ALDLYQVDKRGLDWTDRLVLQTLIEQFQGGPTGLEAIAAATGEDAKTIEEVYEPYLLQIG 328

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIP 332
           ++ RT RGR+    A++HLG+  P
Sbjct: 329 YLARTSRGRIATTAAYEHLGLTPP 352


>gi|23335123|ref|ZP_00120361.1| COG2255: Holliday junction resolvasome, helicase subunit
           [Bifidobacterium longum DJO10A]
 gi|189439316|ref|YP_001954397.1| Holliday junction DNA helicase RuvB [Bifidobacterium longum DJO10A]
 gi|238692057|sp|B3DRY0|RUVB_BIFLD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|189427751|gb|ACD97899.1| Holliday junction resolvasome helicase subunit [Bifidobacterium
           longum DJO10A]
          Length = 348

 Score =  292 bits (747), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 150/315 (47%), Positives = 210/315 (66%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           S+ +  E      LRP  L  F GQ    + L++F++AA+ R    DH+L  GPPGLGKT
Sbjct: 24  SQPIGNEPVSDEELRPHVLGGFIGQPRLKAQLQLFLDAARKRDVPPDHILLAGPPGLGKT 83

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           TLA +VA EL V  R TSGP +  AGDLA++L++L+  +VLFIDEIHRL    EE+LY A
Sbjct: 84  TLAMIVANELEVPIRVTSGPAVQHAGDLASILSSLDVGEVLFIDEIHRLPRAAEELLYIA 143

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           MEDF++D+MVG+GP A S+ + L RFT+I ATTR G+L +PL+ RFG    L+FY  E+L
Sbjct: 144 MEDFRVDVMVGKGPGASSIPLTLPRFTVIGATTREGMLPSPLRARFGFTAHLDFYPHEEL 203

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           + +++R A + G+ +   +A E+A+RSRGTPRIA RLLRRVRD+A V     +  +    
Sbjct: 204 EKLIERSANVLGVNLDTGSAHELALRSRGTPRIANRLLRRVRDWAIVHDLIVVRPDDVKE 263

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL    ID  G D+LD+  L  I RNF GGPVG+  ++A + E  + +E + EPY++++G
Sbjct: 264 ALALYQIDSEGLDRLDIAVLNAIVRNFNGGPVGLNNLAAMVGEESETVETVCEPYLVREG 323

Query: 309 FIQRTPRGRLLMPIA 323
           F+ RTP+GR+   +A
Sbjct: 324 FMIRTPKGRVATELA 338


>gi|284929534|ref|YP_003422056.1| Holliday junction DNA helicase subunit RuvB [cyanobacterium UCYN-A]
 gi|284809978|gb|ADB95675.1| Holliday junction DNA helicase subunit RuvB [cyanobacterium UCYN-A]
          Length = 352

 Score =  292 bits (747), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 141/306 (46%), Positives = 207/306 (67%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP + +E+ GQ +  + L + I+AAK R E +DH+L  GPPGLGKTT++ ++A E+GV+
Sbjct: 41  IRPNSFKEYIGQKDLKNVLDIIIKAAKLREEPIDHLLLYGPPGLGKTTISLILASEMGVD 100

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TS P + K  D+  LL  L+  DVLFIDEIHRL+ + EEILYP MED++LD+ +G+G
Sbjct: 101 CKITSAPSLEKPKDIIGLLVKLKPGDVLFIDEIHRLNHLTEEILYPVMEDYRLDITIGKG 160

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
              +   I+L +FTLI ATT++G ++ PL+DRFG+  RL +YE  +L  I++R A +   
Sbjct: 161 QLTKISSISLPKFTLIGATTKIGSISFPLRDRFGLVQRLKYYEYHELALIIKRSALVLKT 220

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +TDE A EIA+RSRGTPRIA RLL+R+RD+ +V     IT+++A  AL    ID  G +
Sbjct: 221 PITDEGANEIAIRSRGTPRIANRLLKRIRDYMQVKQMNLITKDLAIDALNLYKIDSRGLN 280

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             D   L  +   F GGPVG+E I+A   E    I+++ EPY++Q G+I RTPRGR++  
Sbjct: 281 WTDHLILETMIFQFNGGPVGLEAIAASTGEDIKTIKEVYEPYLLQIGYINRTPRGRVVTE 340

Query: 322 IAWQHL 327
            A++++
Sbjct: 341 AAYKYI 346


>gi|256825357|ref|YP_003149317.1| Holliday junction DNA helicase subunit RuvB [Kytococcus sedentarius
           DSM 20547]
 gi|256688750|gb|ACV06552.1| Holliday junction DNA helicase subunit RuvB [Kytococcus sedentarius
           DSM 20547]
          Length = 357

 Score =  292 bits (747), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 155/322 (48%), Positives = 207/322 (64%), Gaps = 1/322 (0%)

Query: 12  VSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
             Q+DA   + LRP+ L +  GQ      L + +EAA+ R    DH+L  GPPGLGKTTL
Sbjct: 22  AGQDDAGFDAALRPKRLADLAGQDRVRDQLHLVLEAARRRGAPADHILLSGPPGLGKTTL 81

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           A +VA E+    R TSGP I  AGDLAA+L++L + +VLF+DEIHR+S   EE+LY AME
Sbjct: 82  AMIVAGEMAAPIRITSGPAIQHAGDLAAILSSLAEGEVLFLDEIHRMSRAAEEMLYLAME 141

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           DF++D++VG+GP A ++ + L  FT++ ATTR GLL  PL+DRFG    L++Y  EDL T
Sbjct: 142 DFRVDVIVGKGPGATAIPLELPPFTVVGATTRSGLLPAPLRDRFGFTGHLDYYTAEDLAT 201

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           I+   A   G+    E   EIA RSRGTPRIA RLLRRVRD+A+V     ++ E A  AL
Sbjct: 202 ILAGNAVKLGIESEPEGISEIAGRSRGTPRIANRLLRRVRDWAQVHGQHVVSAEAAREAL 261

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
               +D +G D+LD   L  +   F GGPVG+ T++  + E  D +E + EPY++++GFI
Sbjct: 262 ALFDVDLLGLDRLDRAVLEALCHRFDGGPVGLTTLAVAVGEEADTVETVAEPYLVREGFI 321

Query: 311 QRTPRGRLLMPIAWQHLGIDIP 332
            RTPRGR     AW+HLG   P
Sbjct: 322 VRTPRGRAATTAAWEHLGTRPP 343


>gi|170078004|ref|YP_001734642.1| Holliday junction DNA helicase RuvB [Synechococcus sp. PCC 7002]
 gi|238692802|sp|B1XMA0|RUVB_SYNP2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|169885673|gb|ACA99386.1| Holliday junction DNA helicase RuvB [Synechococcus sp. PCC 7002]
          Length = 363

 Score =  290 bits (743), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 156/317 (49%), Positives = 216/317 (68%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
            ++ A+   +RP+ L ++ GQ +    L + I AAKAR E LDH+L  GPPGLGKTT++ 
Sbjct: 34  QEQSANEDRIRPQRLGDYLGQKDLKEVLGIAIAAAKARREPLDHMLLYGPPGLGKTTMSL 93

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++A E+GVN + T+ P + +  D++ LL  LE  D+LFIDEIHRL+ + EE+LYPAMED 
Sbjct: 94  ILAAEMGVNCKITAAPALERPRDISGLLVGLEAGDILFIDEIHRLNRMAEELLYPAMEDG 153

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           +LD+ +G+G SAR+  I L  FTLI ATT+VG LT+PL+DRFG+  RL FYE+++L  IV
Sbjct: 154 RLDVTIGKGVSARTRSIPLKPFTLIGATTKVGALTSPLRDRFGLIQRLRFYEVDELIAIV 213

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R A +    +T E A EIA R+RGTPRIA RLLRR+RD+A+V     I++ +A  AL  
Sbjct: 214 HRSALILEQPITPEGALEIARRARGTPRIANRLLRRIRDYAQVKGYGEISQTVAATALDL 273

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
             +D +G D  D   L  +  +FGGGPVG+E I+A   E    IE++ EPY++Q GF+ R
Sbjct: 274 YNVDALGLDWTDRLILETMLNHFGGGPVGLEAIAAATGEDSKTIEEVYEPYLLQIGFLNR 333

Query: 313 TPRGRLLMPIAWQHLGI 329
           TPRGR++   A QHLG+
Sbjct: 334 TPRGRIVSAKARQHLGL 350


>gi|229820485|ref|YP_002882011.1| Holliday junction DNA helicase RuvB [Beutenbergia cavernae DSM
           12333]
 gi|229566398|gb|ACQ80249.1| Holliday junction DNA helicase RuvB [Beutenbergia cavernae DSM
           12333]
          Length = 345

 Score =  290 bits (742), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 155/318 (48%), Positives = 212/318 (66%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E A  + LRPR L EF GQ      L + +EAA AR    DHVL  G PGLGKTTLA +V
Sbjct: 20  ERAAEAALRPRRLAEFVGQRVVRDQLSLVLEAALARRRPPDHVLLAGGPGLGKTTLAMIV 79

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A E+G   R TSGP I  AGDLAA+L+++++ DVLFIDEIHRL+   EE+LY AMEDF++
Sbjct: 80  ASEVGAALRLTSGPAIQHAGDLAAILSSVQENDVLFIDEIHRLARPAEEMLYLAMEDFRV 139

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D++VG+G  A ++ + L  FT++ ATTR GLL  PL+DRFG    L+FYE+ +L+ +++R
Sbjct: 140 DVVVGKGAGATAIPLALPPFTVVGATTRAGLLPAPLRDRFGFTGYLDFYEVAELEQVLER 199

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A+L    +T  A  EIA RSRGTPRIA RLLRRV+D+A+V  +     + A AAL    
Sbjct: 200 SARLLRAELTPAAGAEIASRSRGTPRIANRLLRRVQDWAQVRGSGVADVDAARAALEVFE 259

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D+ G D+LD   L  +   F GGPVG+ T++  + E  + +E + EP+++++G I RTP
Sbjct: 260 VDERGLDRLDRGVLRALCVRFRGGPVGLGTLAVAVGEEPETVETVAEPFLVREGLIARTP 319

Query: 315 RGRLLMPIAWQHLGIDIP 332
           RGR+    AW HLG++ P
Sbjct: 320 RGRVATAEAWAHLGLEPP 337


>gi|144900759|emb|CAM77623.1| Holliday junction DNA helicase RuvB [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 255

 Score =  290 bits (741), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 135/224 (60%), Positives = 178/224 (79%)

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +FIDEIHRL+  +EE+LYPAMEDFQLDL++GEGP+ARSV+I+L  FTL+ ATTR GLLT 
Sbjct: 1   MFIDEIHRLNPAIEEVLYPAMEDFQLDLIIGEGPAARSVRIDLPPFTLVGATTRSGLLTT 60

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
           PL++RFGIP R+N+Y  ++L+ IV RGA++ G  VT + A E+A R+RGTPR+AGRLLRR
Sbjct: 61  PLRERFGIPCRMNYYTPQELELIVARGARVLGFDVTPDGAAEVARRARGTPRVAGRLLRR 120

Query: 229 VRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAG 288
           VRDFA VA    +  ++AD AL RL +D+MG D +D RYL  IA N+GGGPVG++T++A 
Sbjct: 121 VRDFAAVAGQSPVDAQVADRALTRLEVDQMGLDAMDRRYLKCIADNYGGGPVGVDTLAAA 180

Query: 289 LSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           LSE RD +E++ EPY++QQG IQRTPRGR+L     QH+G++ P
Sbjct: 181 LSESRDTLEEVGEPYLLQQGLIQRTPRGRMLSSARIQHMGLNPP 224


>gi|225552200|ref|ZP_03773140.1| holliday junction DNA helicase RuvB [Borrelia sp. SV1]
 gi|225371198|gb|EEH00628.1| holliday junction DNA helicase RuvB [Borrelia sp. SV1]
          Length = 347

 Score =  289 bits (739), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 144/310 (46%), Positives = 202/310 (65%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+  E+F GQV     L +FI A+K R EALDHV   GPPGLGKTTLA ++A E+  +
Sbjct: 25  LRPKVFEDFKGQVNVKETLSIFIRASKERDEALDHVFLSGPPGLGKTTLASIIAFEMNAS 84

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TS P   K  D+  +LT L+++ VLFIDEIHRL  I+EE+L  AMED++LD ++G+G
Sbjct: 85  IKITSAPAFDKPKDIIGILTGLDEKSVLFIDEIHRLRPIIEEMLCIAMEDYELDWVIGQG 144

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            +AR+V++ L +FTLI ATT+ G +T+PL  RFGI  R   Y   +L  I++R + +  +
Sbjct: 145 ANARTVRMPLPKFTLIGATTKPGKVTSPLYSRFGITARFELYSEIELVEIIKRNSLILNI 204

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + ++AA  +A  SRGTPRIA RLLRR+RD A+V  +  IT +I    L  L ID  G D
Sbjct: 205 EIEEDAAFLLARSSRGTPRIANRLLRRIRDIAQVTGSLVITSDIVSIGLEMLRIDGEGLD 264

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           + D   L  +   F GGPVG++T++  + E  D++ED  EPY+I +GFI RT RGR    
Sbjct: 265 EQDRNILRSLILKFNGGPVGVDTLAISVGETADSLEDFYEPYLIMKGFISRTHRGRKATE 324

Query: 322 IAWQHLGIDI 331
            A+ HL +++
Sbjct: 325 FAYLHLNLEM 334


>gi|296436481|gb|ADH18651.1| Holliday junction DNA helicase RuvB [Chlamydia trachomatis G/11222]
          Length = 334

 Score =  289 bits (739), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 139/306 (45%), Positives = 202/306 (66%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L EF GQ +    L +F+ AA  R E   H LF GPPGLGKT+LA ++A  +G  
Sbjct: 18  LRPKKLTEFCGQKQLKERLDLFLRAAVQRNEVPGHCLFYGPPGLGKTSLAHIMANTIGKG 77

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
               SGP + K  DL  LLT L++ D+ FIDEIHR+    EE LYPAMEDF++D+ +  G
Sbjct: 78  LVIASGPQLLKPSDLIGLLTGLQEGDIFFIDEIHRMGKAAEEYLYPAMEDFKVDITLDSG 137

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P ARSV+++L+ FTL+ ATTR G+L+ PL+ RF    R+++Y  EDL +I+ R ++L  +
Sbjct: 138 PGARSVRLDLAPFTLVGATTRAGMLSEPLRTRFAFTGRVDYYTDEDLVSILSRSSQLLAI 197

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
               E   EIA R+RGTPR+A  LLR VRDFA++     I   +A+ AL  L ID +G +
Sbjct: 198 EANQETLLEIARRARGTPRLANNLLRWVRDFAQMREGNCINSAVAEKALAMLLIDNLGLN 257

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           ++D++ L+++   + GGPVGI+T++  + E    +ED+ EP++I +G +QRT RGR+  P
Sbjct: 258 EIDIKLLSVMIDFYQGGPVGIKTLAMAVGEDVRTLEDMYEPFLILKGLVQRTARGRVATP 317

Query: 322 IAWQHL 327
           +A++HL
Sbjct: 318 LAYEHL 323


>gi|219684815|ref|ZP_03539757.1| holliday junction DNA helicase RuvB [Borrelia garinii PBr]
 gi|219671760|gb|EED28815.1| holliday junction DNA helicase RuvB [Borrelia garinii PBr]
          Length = 347

 Score =  289 bits (739), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 143/310 (46%), Positives = 202/310 (65%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+  E+F GQV     L +FI A+K R EALDHV   GPPGLGKTTLA ++A E+  +
Sbjct: 25  LRPKVFEDFKGQVNVKETLSIFIRASKERGEALDHVFLSGPPGLGKTTLASIIAFEMNAS 84

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TS P   K  D+  +LT L+++ VLFIDEIHRL  I+EE+L  AMED++LD ++G+G
Sbjct: 85  IKITSAPAFDKPKDIIGILTGLDEKSVLFIDEIHRLRPIIEEMLCIAMEDYELDWVIGQG 144

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            +AR+V++ L +FTLI ATT+ G +T+PL  RFGI  R   Y   +L  I++R + +  +
Sbjct: 145 SNARTVRMPLPKFTLIGATTKPGKVTSPLYARFGITARFELYSEIELVEIIKRNSIILNI 204

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + ++AA  +A  SRGTPRIA RLLRR+RD A+V  +  +T +I    L  L ID  G D
Sbjct: 205 EIEEDAAFLLARSSRGTPRIANRLLRRIRDIAQVTGSLVVTSDIVSIGLEMLRIDGEGLD 264

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           + D   L  +   F GGPVG++T++  + E  D++ED  EPY+I +GFI RT RGR    
Sbjct: 265 EQDRNILRSLILKFNGGPVGVDTLAISVGETADSLEDFYEPYLIMKGFINRTHRGRKATE 324

Query: 322 IAWQHLGIDI 331
            A+ HL +++
Sbjct: 325 FAYLHLNLEM 334


>gi|219685282|ref|ZP_03540101.1| holliday junction DNA helicase RuvB [Borrelia garinii Far04]
 gi|219673055|gb|EED30075.1| holliday junction DNA helicase RuvB [Borrelia garinii Far04]
          Length = 347

 Score =  289 bits (739), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 143/310 (46%), Positives = 202/310 (65%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+  E+F GQV     L +FI A+K R EALDHV   GPPGLGKTTLA ++A E+  +
Sbjct: 25  LRPKVFEDFKGQVNVKETLSIFIRASKERGEALDHVFLSGPPGLGKTTLASIIAFEMNAS 84

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TS P   K  D+  +LT L+++ VLFIDEIHRL  I+EE+L  AMED++LD ++G+G
Sbjct: 85  IKITSAPAFDKPKDIIGILTGLDEKSVLFIDEIHRLRPIIEEMLCIAMEDYELDWVIGQG 144

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            +AR+V++ L +FTLI ATT+ G +T+PL  RFGI  R   Y   +L  I++R + +  +
Sbjct: 145 ANARTVRMPLPKFTLIGATTKPGKVTSPLYARFGITARFELYSEIELVEIIKRNSVILNI 204

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + ++AA  +A  SRGTPRIA RLLRR+RD A+V  +  +T +I    L  L ID  G D
Sbjct: 205 EIEEDAAFLLARSSRGTPRIANRLLRRIRDIAQVTGSLVVTSDIVSIGLEMLRIDGEGLD 264

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           + D   L  +   F GGPVG++T++  + E  D++ED  EPY+I +GFI RT RGR    
Sbjct: 265 EQDRNILRSLILKFNGGPVGVDTLAISVGETADSLEDFYEPYLIMKGFINRTHRGRKATE 324

Query: 322 IAWQHLGIDI 331
            A+ HL +++
Sbjct: 325 FAYLHLNLEM 334


>gi|50954748|ref|YP_062036.1| Holliday junction DNA helicase B [Leifsonia xyli subsp. xyli str.
           CTCB07]
 gi|68715445|sp|Q6AFB4|RUVB_LEIXX RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|50951230|gb|AAT88931.1| holliday junction DNA helicase [Leifsonia xyli subsp. xyli str.
           CTCB07]
          Length = 347

 Score =  289 bits (739), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 150/311 (48%), Positives = 202/311 (64%), Gaps = 1/311 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPRTL EF GQ +    L++ + AA+ +    DH+L  GPPGLGKTTLA +VA E    
Sbjct: 24  LRPRTLAEFVGQAKVRGQLQLLLTAARMQERTADHILLAGPPGLGKTTLAMIVAHESDRP 83

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R +SGP I  AGDLAALL++L   +VLFIDEIHR++   EE+LY AMEDF++D+MVG+G
Sbjct: 84  LRLSSGPAIQHAGDLAALLSSLTPGEVLFIDEIHRMARTAEEMLYLAMEDFRIDIMVGKG 143

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
             A S+ ++L+ FTL+ ATTR GLL NPL+DRFG    L FY+  +L  ++ R A +   
Sbjct: 144 AGATSIPLDLAPFTLVGATTRSGLLPNPLRDRFGFTAHLEFYDEGELAQVLARAAVMLEF 203

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  EA  EIA R RGTPRIA RLLRRVRD+A V H          AAL    ++++G D
Sbjct: 204 EIDGEALAEIAGRCRGTPRIANRLLRRVRDYALV-HGGRADIAAVHAALELYDVNELGLD 262

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           +LD   L  I   F GGPVG+ T++  + E  + IE ++EP++++ G + RTPRGR+   
Sbjct: 263 RLDRAVLHAILERFEGGPVGLNTLAVSVGEEPETIESVVEPFLVRIGLLSRTPRGRVATV 322

Query: 322 IAWQHLGIDIP 332
            AW+H G+  P
Sbjct: 323 AAWRHFGLAAP 333


>gi|51598285|ref|YP_072473.1| Holliday junction DNA helicase RuvB [Borrelia garinii PBi]
 gi|68715417|sp|Q662Z0|RUVB_BORGA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|51572856|gb|AAU06881.1| Holliday junction DNA helicase [Borrelia garinii PBi]
          Length = 347

 Score =  288 bits (738), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 147/327 (44%), Positives = 208/327 (63%), Gaps = 1/327 (0%)

Query: 6   GLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
             LS N S   D   + LRP+  E+F GQV     L +FI A+K R EALDHV   GPPG
Sbjct: 8   NFLSSNESYLYDKSENELRPKVFEDFKGQVNVKETLSIFIRASKERGEALDHVFLSGPPG 67

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLA ++A E+  + + TS P   K  D+  +LT L+++ +LFIDEIHRL  I+EE+
Sbjct: 68  LGKTTLASIIAFEMNASIKITSAPAFDKPKDIIGILTGLDEKSILFIDEIHRLRPIIEEM 127

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           L  AMED++LD ++G+G +AR+V++ L +FTLI ATT+ G +T+PL  RFGI  R   Y 
Sbjct: 128 LCIAMEDYELDWVIGQGANARTVRMPLPKFTLIGATTKPGKVTSPLYARFGITARFELYS 187

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
             +L  I++R + +  + + ++AA  +A  SRGTPRIA RLLRR+RD A+V  +  +T +
Sbjct: 188 EIELVEIIKRNSIILNIEIEEDAAFLLARSSRGTPRIANRLLRRIRDIAQVTGSLVVTSD 247

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           I    L  L ID  G D+ D   L  +   F GGPVG++T++  + E  D++ED  EPY+
Sbjct: 248 IVSIGLEMLRIDGEGLDEQDRNILRSLILKFNGGPVGVDTLAISVGETADSLEDFYEPYL 307

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           I +GFI RT RGR     A+ HL +++
Sbjct: 308 IMKGFINRTHRGRKATEFAYLHLNLEM 334


>gi|15834930|ref|NP_296689.1| Holliday junction DNA helicase B [Chlamydia muridarum Nigg]
 gi|270285100|ref|ZP_06194494.1| Holliday junction DNA helicase RuvB [Chlamydia muridarum Nigg]
 gi|270289122|ref|ZP_06195424.1| Holliday junction DNA helicase RuvB [Chlamydia muridarum Weiss]
 gi|301336496|ref|ZP_07224698.1| Holliday junction DNA helicase RuvB [Chlamydia muridarum MopnTet14]
 gi|13431874|sp|Q9PKZ8|RUVB_CHLMU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|7190351|gb|AAF39175.1| Holliday junction DNA helicase RuvB [Chlamydia muridarum Nigg]
          Length = 330

 Score =  288 bits (738), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 140/306 (45%), Positives = 201/306 (65%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L EF GQ +    L +F+ AA  R E   H LF GPPGLGKT+LA ++A  +G  
Sbjct: 18  LRPKKLTEFYGQKQLKERLDLFLRAAVQRKEVPGHCLFYGPPGLGKTSLAHIMANTVGKG 77

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
               SGP + K  DL  LLT L++ DV FIDEIHR+    EE LYPAMEDF++D+ +  G
Sbjct: 78  LVIASGPQLLKPSDLIGLLTGLQEGDVFFIDEIHRMGKTAEEYLYPAMEDFKVDITLDSG 137

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P ARSV+++L+ FTL+ ATTR G+L+ PL+ RF    R+++Y  EDL  I+ R A+L  +
Sbjct: 138 PGARSVRLDLAPFTLVGATTRAGMLSEPLRTRFAFTGRVDYYNEEDLVAILSRSAQLLSI 197

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
               E   EIA R+RGTPR+A  LLR VRDFA++     I   +A+ AL  L ID +G +
Sbjct: 198 EANKETLLEIARRARGTPRLANNLLRWVRDFAQMREGNCINSVVAEKALAMLLIDNLGLN 257

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           ++D++ L+++   + GGPVG++T++  + E    +ED+ EP++I +G +QRT RGR+  P
Sbjct: 258 EIDIKLLSVMIDFYQGGPVGMKTLAMAVGEDVRTLEDMYEPFLILKGLVQRTARGRVATP 317

Query: 322 IAWQHL 327
           +A++HL
Sbjct: 318 LAYEHL 323


>gi|15594368|ref|NP_212156.1| Holliday junction DNA helicase RuvB [Borrelia burgdorferi B31]
 gi|218249701|ref|YP_002374556.1| holliday junction DNA helicase RuvB [Borrelia burgdorferi ZS7]
 gi|221217414|ref|ZP_03588885.1| holliday junction DNA helicase RuvB [Borrelia burgdorferi 72a]
 gi|223889127|ref|ZP_03623716.1| holliday junction DNA helicase RuvB [Borrelia burgdorferi 64b]
 gi|224532569|ref|ZP_03673192.1| holliday junction DNA helicase RuvB [Borrelia burgdorferi WI91-23]
 gi|224533948|ref|ZP_03674533.1| holliday junction DNA helicase RuvB [Borrelia burgdorferi CA-11.2a]
 gi|225549285|ref|ZP_03770258.1| holliday junction DNA helicase RuvB [Borrelia burgdorferi 94a]
 gi|225549757|ref|ZP_03770722.1| holliday junction DNA helicase RuvB [Borrelia burgdorferi 118a]
 gi|226321148|ref|ZP_03796689.1| holliday junction DNA helicase RuvB [Borrelia burgdorferi 29805]
 gi|226322063|ref|ZP_03797588.1| holliday junction DNA helicase RuvB [Borrelia burgdorferi Bol26]
 gi|3122844|sp|P70828|RUVB_BORBU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|1620917|emb|CAA70097.1| B subunit of RuvAB helicase [Borrelia burgdorferi]
 gi|2687900|gb|AAC66410.1| Holliday junction DNA helicase (ruvB) [Borrelia burgdorferi B31]
 gi|218164889|gb|ACK74950.1| holliday junction DNA helicase RuvB [Borrelia burgdorferi ZS7]
 gi|221192692|gb|EEE18908.1| holliday junction DNA helicase RuvB [Borrelia burgdorferi 72a]
 gi|223885376|gb|EEF56477.1| holliday junction DNA helicase RuvB [Borrelia burgdorferi 64b]
 gi|224512512|gb|EEF82890.1| holliday junction DNA helicase RuvB [Borrelia burgdorferi WI91-23]
 gi|224512951|gb|EEF83317.1| holliday junction DNA helicase RuvB [Borrelia burgdorferi CA-11.2a]
 gi|225369717|gb|EEG99165.1| holliday junction DNA helicase RuvB [Borrelia burgdorferi 118a]
 gi|225370143|gb|EEG99583.1| holliday junction DNA helicase RuvB [Borrelia burgdorferi 94a]
 gi|226232653|gb|EEH31407.1| holliday junction DNA helicase RuvB [Borrelia burgdorferi Bol26]
 gi|226233440|gb|EEH32180.1| holliday junction DNA helicase RuvB [Borrelia burgdorferi 29805]
 gi|312147772|gb|ADQ30431.1| holliday junction DNA helicase RuvB [Borrelia burgdorferi JD1]
 gi|312149274|gb|ADQ29345.1| holliday junction DNA helicase RuvB [Borrelia burgdorferi N40]
          Length = 347

 Score =  288 bits (737), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 144/310 (46%), Positives = 202/310 (65%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+  E+F GQV     L +FI A+K R EALDHV   GPPGLGKTTLA ++A E+  +
Sbjct: 25  LRPKVFEDFKGQVNVKETLSIFIRASKERDEALDHVFLSGPPGLGKTTLASIIAFEMNAS 84

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TS P   K  D+  +LT L+++ VLFIDEIHRL  I+EE+L  AMED++LD ++G+G
Sbjct: 85  IKITSAPAFDKPKDIIGILTGLDEKSVLFIDEIHRLRPIIEEMLCIAMEDYELDWVIGQG 144

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            +AR+V++ L +FTLI ATT+ G +T+PL  RFGI  R   Y   +L  I++R + +  +
Sbjct: 145 ANARTVRMPLPKFTLIGATTKPGKVTSPLYARFGITARFELYSEIELVEIIKRNSLILNI 204

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + ++AA  +A  SRGTPRIA RLLRR+RD A+V  +  IT +I    L  L ID  G D
Sbjct: 205 EIEEDAAFLLARSSRGTPRIANRLLRRIRDIAQVTGSLVITSDIVSIGLEMLRIDGEGLD 264

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           + D   L  +   F GGPVG++T++  + E  D++ED  EPY+I +GFI RT RGR    
Sbjct: 265 EQDRNILRSLILKFNGGPVGVDTLAISVGETADSLEDFYEPYLIMKGFISRTHRGRKATE 324

Query: 322 IAWQHLGIDI 331
            A+ HL +++
Sbjct: 325 FAYLHLNLEM 334


>gi|255310842|ref|ZP_05353412.1| Holliday junction DNA helicase RuvB [Chlamydia trachomatis 6276]
 gi|255317142|ref|ZP_05358388.1| Holliday junction DNA helicase RuvB [Chlamydia trachomatis 6276s]
          Length = 334

 Score =  288 bits (737), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 138/306 (45%), Positives = 202/306 (66%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L EF GQ +    L +F+ AA  R E   H LF GPPGLGKT+LA ++A  +G  
Sbjct: 18  LRPKKLTEFCGQKQLKERLDLFLRAAVQRKEVPGHCLFYGPPGLGKTSLAHIMANTIGKG 77

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
               SGP + K  DL  LLT L++ D+ FIDEIHR+    EE LYPAMEDF++D+ +  G
Sbjct: 78  LVIASGPQLLKPSDLIGLLTGLQEGDIFFIDEIHRMGKAAEEYLYPAMEDFKVDITLDSG 137

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P ARSV+++L+ FTL+ ATTR G+L+ PL+ RF    R+++Y  EDL +I+ R ++L  +
Sbjct: 138 PGARSVRLDLAPFTLVGATTRAGMLSEPLRTRFAFTGRVDYYTDEDLVSILSRSSQLLSI 197

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
               E   EIA R+RGTPR+A  LLR VRDFA++     I   +A+ AL  L ID +G +
Sbjct: 198 EANQETLLEIARRARGTPRLANNLLRWVRDFAQMREGNCINSAVAEKALAMLLIDNLGLN 257

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           ++D++ L+++   + GGPVG++T++  + E    +ED+ EP++I +G +QRT RGR+  P
Sbjct: 258 EIDIKLLSVMIDFYQGGPVGMKTLAMAVGEDVRTLEDMYEPFLILKGLVQRTARGRVATP 317

Query: 322 IAWQHL 327
           +A++HL
Sbjct: 318 LAYEHL 323


>gi|15613788|ref|NP_242091.1| Holliday junction DNA helicase RuvB [Bacillus halodurans C-125]
 gi|10173841|dbj|BAB04944.1| holliday junction DNA helicase (DNA-binding protein) [Bacillus
           halodurans C-125]
          Length = 253

 Score =  288 bits (737), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 135/253 (53%), Positives = 193/253 (76%)

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R+TSGP I + GDLAA+LT LE  DVLFIDEIHRL+ +VEE+LYPAMED+ +D+++G+G
Sbjct: 1   MRTTSGPAIERPGDLAAILTALEPGDVLFIDEIHRLNRMVEEVLYPAMEDYCIDIVIGKG 60

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARSV+++L  FTL+ ATTR G+L++PL+DRFG+  RL +Y +E+L TI++R A +   
Sbjct: 61  PTARSVRLDLPPFTLVGATTRAGMLSSPLRDRFGVMARLEYYNVEELTTIIERTATIFDT 120

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  +A+ EIA RSRGTPRIA RLLRRVRDFA+V+    I+   A  +L RL +D++G D
Sbjct: 121 ELERDASIEIARRSRGTPRIANRLLRRVRDFAQVSGDMRISSSRAIESLERLQVDRLGLD 180

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + +  I   F GGPVG+ETISA + E  D IE++ EPY++Q GF+QRTPRGR++ P
Sbjct: 181 HIDHKLIKGIMTKFNGGPVGLETISATIGEETDTIEEVYEPYLLQIGFLQRTPRGRVVTP 240

Query: 322 IAWQHLGIDIPHR 334
           +A++H  +++P++
Sbjct: 241 LAYEHFNMEVPNK 253


>gi|88856265|ref|ZP_01130925.1| holliday junction DNA helicase [marine actinobacterium PHSC20C1]
 gi|88814584|gb|EAR24446.1| holliday junction DNA helicase [marine actinobacterium PHSC20C1]
          Length = 343

 Score =  288 bits (736), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 148/332 (44%), Positives = 216/332 (65%), Gaps = 4/332 (1%)

Query: 1   MMDREGLLSRNVSQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M D E + +    + +A+++    LRP++L+EF GQ +    L++ ++AA  +    DH+
Sbjct: 1   MTDNEDVGANPTIESEAELAFEGALRPKSLDEFVGQQKVRGQLQLLLKAAAMQNRTADHI 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTLA +VA E     R +SGP I  AGDLAA+L++L   +VLFIDEIHR+
Sbjct: 61  LLAGPPGLGKTTLAMIVAHESNRPLRMSSGPAIQHAGDLAAVLSSLLPGEVLFIDEIHRM 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           +   EE+LY AMEDF++D+MVG+G  A S+ ++++ FTL+ ATTR GLL NPL+DRFG  
Sbjct: 121 ARSAEEMLYLAMEDFRIDIMVGKGAGATSIPLDIAPFTLVGATTRSGLLPNPLRDRFGFT 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
             L FY+  +L+ ++ R A +  L +   A  EIA R RGTPRIA RLLRRVRD+A V H
Sbjct: 181 AHLEFYDEPELEQVLVRAAVMLDLDIDRTAIAEIAGRCRGTPRIANRLLRRVRDYALVNH 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
               +R+   AAL    +D+ G D+LD   +  +   F GGPVG+ T++  + E  + +E
Sbjct: 241 IPA-SRDAVRAALELYDVDERGLDRLDRAVMQTVLTRFDGGPVGLSTLAVSVGEEAETVE 299

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
            ++EP++++ G + RTPRGR+    AW+H G+
Sbjct: 300 SVVEPFLVRIGLLSRTPRGRVATRAAWEHFGM 331


>gi|15604759|ref|NP_219543.1| Holliday junction DNA helicase RuvB [Chlamydia trachomatis
           D/UW-3/CX]
 gi|166154261|ref|YP_001654379.1| Holliday junction DNA helicase B [Chlamydia trachomatis 434/Bu]
 gi|166155136|ref|YP_001653391.1| Holliday junction DNA helicase B [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|237804390|ref|YP_002888544.1| Holliday junction DNA helicase RuvB [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|301335510|ref|ZP_07223754.1| Holliday junction DNA helicase RuvB [Chlamydia trachomatis L2tet1]
 gi|6685939|sp|O84044|RUVB_CHLTR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|238687402|sp|B0B9E8|RUVB_CHLT2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|238687455|sp|B0BB27|RUVB_CHLTB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|3328431|gb|AAC67630.1| Holliday Junction Helicase [Chlamydia trachomatis D/UW-3/CX]
 gi|165930249|emb|CAP03735.1| Holliday junction ATP-dependent DNA helicase [Chlamydia trachomatis
           434/Bu]
 gi|165931124|emb|CAP06689.1| Holliday junction ATP-dependent DNA helicase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|231272690|emb|CAX09593.1| Holliday junction ATP-dependent DNA helicase [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|296435557|gb|ADH17731.1| Holliday junction DNA helicase RuvB [Chlamydia trachomatis G/9768]
 gi|296437417|gb|ADH19578.1| Holliday junction DNA helicase RuvB [Chlamydia trachomatis G/11074]
 gi|297139916|gb|ADH96674.1| Holliday junction DNA helicase RuvB [Chlamydia trachomatis G/9301]
 gi|297748170|gb|ADI50716.1| RuvB [Chlamydia trachomatis D-EC]
 gi|297749050|gb|ADI51728.1| RuvB [Chlamydia trachomatis D-LC]
          Length = 334

 Score =  288 bits (736), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 138/306 (45%), Positives = 202/306 (66%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L EF GQ +    L +F+ AA  R E   H LF GPPGLGKT+LA ++A  +G  
Sbjct: 18  LRPKKLTEFCGQKQLKERLDLFLRAAVQRNEVPGHCLFYGPPGLGKTSLAHIMANTIGKG 77

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
               SGP + K  DL  LLT L++ D+ FIDEIHR+    EE LYPAMEDF++D+ +  G
Sbjct: 78  LVIASGPQLLKPSDLIGLLTGLQEGDIFFIDEIHRMGKAAEEYLYPAMEDFKVDITLDSG 137

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P ARSV+++L+ FTL+ ATTR G+L+ PL+ RF    R+++Y  EDL +I+ R ++L  +
Sbjct: 138 PGARSVRLDLAPFTLVGATTRAGMLSEPLRTRFAFTGRVDYYTDEDLVSILSRSSQLLAI 197

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
               E   EIA R+RGTPR+A  LLR VRDFA++     I   +A+ AL  L ID +G +
Sbjct: 198 EANQETLLEIARRARGTPRLANNLLRWVRDFAQMREGNCINSAVAEKALAMLLIDNLGLN 257

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           ++D++ L+++   + GGPVG++T++  + E    +ED+ EP++I +G +QRT RGR+  P
Sbjct: 258 EIDIKLLSVMIDFYQGGPVGMKTLAMAVGEDVRTLEDMYEPFLILKGLVQRTARGRVATP 317

Query: 322 IAWQHL 327
           +A++HL
Sbjct: 318 LAYEHL 323


>gi|76788753|ref|YP_327839.1| Holliday junction DNA helicase B [Chlamydia trachomatis A/HAR-13]
 gi|237802475|ref|YP_002887669.1| Holliday junction DNA helicase RuvB [Chlamydia trachomatis
           B/Jali20/OT]
 gi|255348403|ref|ZP_05380410.1| Holliday junction DNA helicase RuvB [Chlamydia trachomatis 70]
 gi|255502944|ref|ZP_05381334.1| Holliday junction DNA helicase RuvB [Chlamydia trachomatis 70s]
 gi|255506613|ref|ZP_05382252.1| Holliday junction DNA helicase RuvB [Chlamydia trachomatis
           D(s)2923]
 gi|97189991|sp|Q3KMY1|RUVB_CHLTA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|76167283|gb|AAX50291.1| RuvB [Chlamydia trachomatis A/HAR-13]
 gi|231273709|emb|CAX10487.1| Holliday junction ATP-dependent DNA helicase [Chlamydia trachomatis
           B/Jali20/OT]
 gi|289525085|emb|CBJ14556.1| Holliday junction ATP-dependent DNA helicase [Chlamydia trachomatis
           Sweden2]
 gi|296434626|gb|ADH16804.1| Holliday junction DNA helicase RuvB [Chlamydia trachomatis E/150]
 gi|296438344|gb|ADH20497.1| Holliday junction DNA helicase RuvB [Chlamydia trachomatis E/11023]
          Length = 334

 Score =  288 bits (736), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 138/306 (45%), Positives = 202/306 (66%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L EF GQ +    L +F+ AA  R E   H LF GPPGLGKT+LA ++A  +G  
Sbjct: 18  LRPKKLTEFCGQKQLKERLDLFLRAAVQRNEVPGHCLFYGPPGLGKTSLAHIMANTIGKG 77

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
               SGP + K  DL  LLT L++ D+ FIDEIHR+    EE LYPAMEDF++D+ +  G
Sbjct: 78  LVIASGPQLLKPSDLIGLLTGLQEGDIFFIDEIHRMGKAAEEYLYPAMEDFKVDITLDSG 137

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P ARSV+++L+ FTL+ ATTR G+L+ PL+ RF    R+++Y  EDL +I+ R ++L  +
Sbjct: 138 PGARSVRLDLAPFTLVGATTRAGMLSEPLRTRFAFTGRVDYYTDEDLVSILSRSSQLLSI 197

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
               E   EIA R+RGTPR+A  LLR VRDFA++     I   +A+ AL  L ID +G +
Sbjct: 198 EANQETLLEIARRARGTPRLANNLLRWVRDFAQMREGNCINSAVAEKALAMLLIDNLGLN 257

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           ++D++ L+++   + GGPVG++T++  + E    +ED+ EP++I +G +QRT RGR+  P
Sbjct: 258 EIDIKLLSVMIDFYQGGPVGMKTLAMAVGEDVRTLEDMYEPFLILKGLVQRTARGRVATP 317

Query: 322 IAWQHL 327
           +A++HL
Sbjct: 318 LAYEHL 323


>gi|332295727|ref|YP_004437650.1| Holliday junction ATP-dependent DNA helicase ruvB
           [Thermodesulfobium narugense DSM 14796]
 gi|332178830|gb|AEE14519.1| Holliday junction ATP-dependent DNA helicase ruvB
           [Thermodesulfobium narugense DSM 14796]
          Length = 319

 Score =  287 bits (734), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 149/310 (48%), Positives = 208/310 (67%), Gaps = 1/310 (0%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +++LRP++ +E+ GQ      LK+ ++AAK R E LDH+L  GPPGLGKTTLA ++A E+
Sbjct: 1   MNILRPKSFDEYIGQETIKRLLKISVDAAKKRNEMLDHILLSGPPGLGKTTLASILAYEM 60

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR-DVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           G NF+      + K  DL  LLT+++    VLFIDEIHRL   +EEILY +MED+ +D+ 
Sbjct: 61  GKNFKFAIASALQKPIDLVGLLTSIDKEGSVLFIDEIHRLPKNLEEILYISMEDYIVDIS 120

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
           V +G  A+S+++NL  FTLI ATT+ GLL++PL DRFGI     FY++E+L  I++R A+
Sbjct: 121 VSKGVGAQSIRLNLPPFTLICATTKPGLLSSPLIDRFGIHGYFEFYQVEELTAIIKRSAQ 180

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257
              L + +EA+  +A RSR TPR+A +LLRRVRD+ +V   K I  E A  +L  + ID 
Sbjct: 181 FLELDIEEEASEFLAKRSRFTPRVANKLLRRVRDYVQVNKIKLIDVEAARKSLEIINIDD 240

Query: 258 MGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317
           +G + LD +YL  +   F GGPVGI+ IS  L E  + IEDL EPY+++  FIQRTPRGR
Sbjct: 241 LGLNDLDRKYLRALKDIFKGGPVGIDNISQFLGESPETIEDLCEPYLLKIDFIQRTPRGR 300

Query: 318 LLMPIAWQHL 327
           +L   A  +L
Sbjct: 301 ILTENALNYL 310


>gi|216264915|ref|ZP_03436907.1| holliday junction DNA helicase RuvB [Borrelia burgdorferi 156a]
 gi|215981388|gb|EEC22195.1| holliday junction DNA helicase RuvB [Borrelia burgdorferi 156a]
          Length = 347

 Score =  286 bits (733), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 143/310 (46%), Positives = 202/310 (65%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+  ++F GQV     L +FI A+K R EALDHV   GPPGLGKTTLA ++A E+  +
Sbjct: 25  LRPKVFKDFKGQVNVKETLSIFIRASKERDEALDHVFLSGPPGLGKTTLASIIAFEMNAS 84

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TS P   K  D+  +LT L+++ VLFIDEIHRL  I+EE+L  AMED++LD ++G+G
Sbjct: 85  IKITSAPAFDKPKDIIGILTGLDEKSVLFIDEIHRLRPIIEEMLCIAMEDYELDWVIGQG 144

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            +AR+V++ L +FTLI ATT+ G +T+PL  RFGI  R   Y   +L  I++R + +  +
Sbjct: 145 ANARTVRMPLPKFTLIGATTKPGKVTSPLYARFGITARFELYSEIELVEIIKRNSLILNI 204

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + ++AA  +A  SRGTPRIA RLLRR+RD A+V  +  IT +I    L  L ID  G D
Sbjct: 205 EIEEDAAFLLARSSRGTPRIANRLLRRIRDIAQVTGSLVITSDIVSIGLEMLRIDGEGLD 264

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           + D   L  +   F GGPVG++T++  + E  D++ED  EPY+I +GFI RT RGR    
Sbjct: 265 EQDRNILRSLILKFNGGPVGVDTLAISVGETADSLEDFYEPYLIMKGFISRTHRGRKATE 324

Query: 322 IAWQHLGIDI 331
            A+ HL +++
Sbjct: 325 FAYLHLNLEM 334


>gi|195941762|ref|ZP_03087144.1| Holliday junction DNA helicase B [Borrelia burgdorferi 80a]
          Length = 347

 Score =  286 bits (733), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 144/310 (46%), Positives = 201/310 (64%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+  E+F GQV     L +FI A+K R EALDHV   GPPGLGKTTLA ++A E+  +
Sbjct: 25  LRPKVFEDFKGQVNVKETLSIFIRASKERDEALDHVFLSGPPGLGKTTLASIIAFEMNAS 84

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TS P   K  D+  +LT L+++ VLFIDEIHRL  I+EE+L  AMED++LD ++G+G
Sbjct: 85  IKITSAPAFDKPKDIIGILTGLDEKSVLFIDEIHRLRPIIEEMLCIAMEDYELDWVIGQG 144

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            +AR+V++ L +FTLI ATT+ G +T+PL  RFGI  R   Y   +L  I++R + +  +
Sbjct: 145 ANARTVRMPLPKFTLIGATTKPGKVTSPLYARFGITARFELYSEIELVEIIKRNSLILNI 204

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  +AA  +A  SRGTPRIA RLLRR+RD A+V  +  IT +I    L  L ID  G D
Sbjct: 205 EIEADAAFLLARSSRGTPRIANRLLRRIRDIAQVTGSLVITSDIVSIGLEMLRIDGEGLD 264

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           + D   L  +   F GGPVG++T++  + E  D++ED  EPY+I +GFI RT RGR    
Sbjct: 265 EQDRNILRSLILKFNGGPVGVDTLAISVGETADSLEDFYEPYLIMKGFISRTHRGRKATE 324

Query: 322 IAWQHLGIDI 331
            A+ HL +++
Sbjct: 325 FAYLHLNLEM 334


>gi|87301991|ref|ZP_01084825.1| Holliday junction DNA helicase RuvB [Synechococcus sp. WH 5701]
 gi|87283559|gb|EAQ75514.1| Holliday junction DNA helicase RuvB [Synechococcus sp. WH 5701]
          Length = 359

 Score =  286 bits (732), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 161/306 (52%), Positives = 210/306 (68%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPR L ++ GQ E    L + +EA + RAEALDHVL  GPPGLGKTT+A V+A ELGV 
Sbjct: 48  LRPRRLSDYIGQSELKQVLGIAVEATRQRAEALDHVLLYGPPGLGKTTMALVLAEELGVR 107

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TS P + +  D+  LL NL   +VLFIDEIHRL+ + EE+LYPAMEDF+LDL VG+G
Sbjct: 108 CRITSAPALERPRDIIGLLVNLRPNEVLFIDEIHRLNRVAEELLYPAMEDFRLDLTVGKG 167

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            +AR+  + L+ FTL+ ATTR G L++PL+DRFG+  RL FY ++DL+ IV+R A L GL
Sbjct: 168 TTARTRAVPLAPFTLVGATTRAGALSSPLRDRFGLIQRLEFYTVDDLQAIVERAAGLIGL 227

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  EAA E+A R RGTPRIA RLLRRVRD A V     I   +   AL    +D  G D
Sbjct: 228 VLEAEAAVEVARRCRGTPRIANRLLRRVRDVASVQGEARIGPGLVAEALSLHRVDDRGLD 287

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             D R L ++   +GGGPVG++T++AGL E    +E ++EP+++Q GF+QRTPRGR+   
Sbjct: 288 ASDRRLLELLLGGYGGGPVGLDTLAAGLGEDPITLETVVEPFLLQLGFLQRTPRGRVATE 347

Query: 322 IAWQHL 327
            A +HL
Sbjct: 348 AARRHL 353


>gi|224531808|ref|ZP_03672440.1| holliday junction DNA helicase RuvB [Borrelia valaisiana VS116]
 gi|224511273|gb|EEF81679.1| holliday junction DNA helicase RuvB [Borrelia valaisiana VS116]
          Length = 347

 Score =  286 bits (731), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 142/310 (45%), Positives = 201/310 (64%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+  E+F GQ      L +FI A+K R EALDHV   GPPGLGKTTLA ++A E+  +
Sbjct: 25  LRPKVFEDFKGQANVKETLSIFIRASKERDEALDHVFLSGPPGLGKTTLASIIAFEMNAS 84

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TS P   K  D+  +LT L+++ VLFIDEIHRL  I+EE+L  AMED++LD ++G+G
Sbjct: 85  IKITSAPAFDKPKDIIGILTGLDEKSVLFIDEIHRLRPIIEEMLCIAMEDYELDWVIGQG 144

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            +AR+V++ L +FTLI ATT+ G +T+PL  RFGI  R   Y   +L  I++R + +  +
Sbjct: 145 ANARTVRMPLPKFTLIGATTKPGKVTSPLYARFGITARFELYSEIELVEIIRRNSVILNI 204

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + ++AA  +A  SRGTPRIA RLLRR+RD A+V  +  +T +I    L  L ID  G D
Sbjct: 205 EIEEDAAFLLARSSRGTPRIANRLLRRIRDIAQVTGSLVVTSDIVSIGLEMLRIDGEGLD 264

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           + D   L  +   F GGPVG++T++  + E  D++ED  EPY+I +GFI RT RGR    
Sbjct: 265 EQDRNILRSLILKFNGGPVGVDTLAISVGETADSLEDFYEPYLIMKGFINRTHRGRKATE 324

Query: 322 IAWQHLGIDI 331
            A+ HL +++
Sbjct: 325 FAYLHLNLEM 334


>gi|224534929|ref|ZP_03675498.1| holliday junction DNA helicase RuvB [Borrelia spielmanii A14S]
 gi|224513869|gb|EEF84194.1| holliday junction DNA helicase RuvB [Borrelia spielmanii A14S]
          Length = 347

 Score =  285 bits (730), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 142/310 (45%), Positives = 201/310 (64%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+  E+F GQ      L +FI A+K R EALDHV   GPPGLGKTTLA ++A E+  +
Sbjct: 25  LRPKVFEDFKGQANVKETLSIFIRASKERDEALDHVFLSGPPGLGKTTLASIIAFEMNAS 84

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TS P   K  D+  +LT L+++ VLFIDEIHRL  I+EE+L  AMED++LD ++G+G
Sbjct: 85  IKITSAPAFDKPKDIIGILTGLDEKSVLFIDEIHRLRPIIEEMLCIAMEDYELDWVIGQG 144

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            +AR+V++ L +FTLI ATT+ G +T+PL  RFGI  R   Y   +L  I++R + +  +
Sbjct: 145 ANARTVRMPLPKFTLIGATTKPGKVTSPLYARFGITARFELYSEIELVEIIKRNSIILNI 204

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + ++AA  +A  SRGTPRIA RLLRR+RD A+V  +  +T +I    L  L ID  G D
Sbjct: 205 EIEEDAAFLLARSSRGTPRIANRLLRRIRDIAQVTGSLVVTSDIVAIGLEMLRIDGEGLD 264

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           + D   L  +   F GGPVG++T++  + E  D++ED  EPY+I +GFI RT RGR    
Sbjct: 265 EQDRNILRSLILKFNGGPVGVDTLAISVGETADSLEDFYEPYLIMKGFISRTHRGRKATE 324

Query: 322 IAWQHLGIDI 331
            A+ HL +++
Sbjct: 325 FAYLHLNLEM 334


>gi|111114844|ref|YP_709462.1| Holliday junction DNA helicase RuvB [Borrelia afzelii PKo]
 gi|216264013|ref|ZP_03436007.1| holliday junction DNA helicase RuvB [Borrelia afzelii ACA-1]
 gi|123341448|sp|Q0SPE2|RUVB_BORAP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|110890118|gb|ABH01286.1| Holliday junction DNA helicase [Borrelia afzelii PKo]
 gi|215980057|gb|EEC20879.1| holliday junction DNA helicase RuvB [Borrelia afzelii ACA-1]
          Length = 347

 Score =  285 bits (729), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 142/310 (45%), Positives = 201/310 (64%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+  E+F GQ      L +FI A+K R EALDHV   GPPGLGKTTLA ++A E+  +
Sbjct: 25  LRPKVFEDFKGQANVKETLSIFIRASKERDEALDHVFLSGPPGLGKTTLASIIAFEMNAS 84

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TS P   K  D+  +LT L+++ VLFIDEIHRL  I+EE+L  AMED++LD ++G+G
Sbjct: 85  IKITSAPAFDKPKDIIGILTGLDEKSVLFIDEIHRLRPIIEEMLCIAMEDYELDWVIGQG 144

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            +AR+V++ L +FTLI ATT+ G +T+PL  RFGI  R   Y   +L  I++R + +  +
Sbjct: 145 ANARTVRMPLPKFTLIGATTKPGKVTSPLYARFGITARFELYSEIELVEIIKRNSIILNI 204

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + ++AA  +A  SRGTPRIA RLLRR+RD A+V  +  +T +I    L  L ID  G D
Sbjct: 205 EIEEDAAFLLARSSRGTPRIANRLLRRIRDIAQVTGSLVVTSDIVAIGLEMLRIDGEGLD 264

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           + D   L  +   F GGPVG++T++  + E  D++ED  EPY+I +GFI RT RGR    
Sbjct: 265 EQDRNILRSLILKFNGGPVGVDTLAISVGETADSLEDFYEPYLIMKGFISRTHRGRKATE 324

Query: 322 IAWQHLGIDI 331
            A+ HL +++
Sbjct: 325 FAYLHLNLEM 334


>gi|33864671|ref|NP_896230.1| Holliday junction DNA helicase RuvB [Synechococcus sp. WH 8102]
 gi|44888401|sp|Q7U9W7|RUVB_SYNPX RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|33632194|emb|CAE06650.1| Holliday junction DNA helicase RuvB [Synechococcus sp. WH 8102]
          Length = 348

 Score =  285 bits (729), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 152/307 (49%), Positives = 203/307 (66%), Gaps = 1/307 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L+++ GQ E    L + ++AA  R +ALDHVL  GPPGLGKTT+A V+A ELGV 
Sbjct: 36  LRPKRLDDYIGQDELKQVLGIAVQAALGRGDALDHVLLYGPPGLGKTTMALVLAEELGVT 95

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TS P + +  D+  LL N++ RD+LFIDEIHRL+ + EE+LYPAMED +LDL VG+G
Sbjct: 96  CRITSAPALERPRDIVGLLVNVQPRDLLFIDEIHRLNRVSEELLYPAMEDRRLDLTVGKG 155

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            +AR+  + L  FTL+ ATT+ G L++PL+DRFG+  RL FY  EDL+ IV R A L G+
Sbjct: 156 STARTRSLELPPFTLVGATTKAGSLSSPLRDRFGLIQRLEFYGQEDLEAIVSRTADLLGV 215

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV-AHAKTITREIADAALLRLAIDKMGF 260
           +++  A   IA   RGTPRIA RLLRRVRD A V      I   +   AL    +D  G 
Sbjct: 216 SLSAGACRRIAGCCRGTPRIANRLLRRVRDVACVQGRQNQIDEGLVSQALSLHRVDHRGL 275

Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320
           D  D R L  + ++  GGPVG+ET++A L E    +E ++EP+++QQG + RTPRGR+L 
Sbjct: 276 DAGDRRLLAQLDQHHDGGPVGLETLAAALGEDPTTLESVVEPFLLQQGLLVRTPRGRMLT 335

Query: 321 PIAWQHL 327
             A  HL
Sbjct: 336 EAARAHL 342


>gi|257068562|ref|YP_003154817.1| Holliday junction DNA helicase subunit RuvB [Brachybacterium
           faecium DSM 4810]
 gi|256559380|gb|ACU85227.1| Holliday junction DNA helicase subunit RuvB [Brachybacterium
           faecium DSM 4810]
          Length = 353

 Score =  285 bits (728), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 155/322 (48%), Positives = 215/322 (66%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           V  E    + LRPR L+EF GQ      L + ++AA AR  A +H+L  GPPGLGKTTLA
Sbjct: 20  VPPERTAEAALRPRRLDEFVGQQVVRDQLSLVLDAASARGRAPEHMLLSGPPGLGKTTLA 79

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            ++A EL V  R TSGP I  AGDLAA+L++L++ +VLFIDEIHRL+   EE+LY AMED
Sbjct: 80  MIIAAELSVPLRITSGPAIQHAGDLAAILSSLDEGEVLFIDEIHRLARPAEEMLYIAMED 139

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F++D++VG+G  A S+ ++L  FT + ATTR GLL  PL+DRFG    L+FY  ++L+ +
Sbjct: 140 FRVDVVVGKGVGATSIPLDLPPFTAVGATTRAGLLPAPLRDRFGFIGHLDFYGAQELREV 199

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           V R A    + + + AA EI+ RSRGTPRIA RLLRRVRD+A+V  +  +    A  AL 
Sbjct: 200 VHRSAARLEVELDEPAAVEISTRSRGTPRIANRLLRRVRDWAQVRGSGRLDLAAAKEALR 259

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
              +D+ G D+LD   L+ +   F GGPVG+ T++  + E  + +E ++EPY++++GF+ 
Sbjct: 260 VYEVDERGLDRLDRAVLSALCGRFSGGPVGLSTLAVAVGEETETVETMVEPYLVREGFLL 319

Query: 312 RTPRGRLLMPIAWQHLGIDIPH 333
           RTPRGR   P AW HLG++ P 
Sbjct: 320 RTPRGRAAAPAAWTHLGLEPPE 341


>gi|312977889|ref|ZP_07789635.1| holliday junction DNA helicase RuvB [Lactobacillus crispatus
           CTV-05]
 gi|310895196|gb|EFQ44264.1| holliday junction DNA helicase RuvB [Lactobacillus crispatus
           CTV-05]
          Length = 325

 Score =  283 bits (723), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 152/307 (49%), Positives = 203/307 (66%), Gaps = 16/307 (5%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           N  ++  ++SL RP+TL+++ GQ      + ++I+AA+ R EALDHVL  GPPGLGKTTL
Sbjct: 16  NPEEQQMELSL-RPQTLDQYLGQKRVKKEMSIYIKAARQRDEALDHVLLYGPPGLGKTTL 74

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           A V+A ELGV+ +STSGP I KAGDL ALL++L+  DVLFIDEIHRL+  VEE+LY AME
Sbjct: 75  AFVIANELGVHLKSTSGPAIEKAGDLVALLSDLDPGDVLFIDEIHRLAKPVEEVLYSAME 134

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           D+ +D+++GEG +  +V + L  FTLI ATT  G L+ PL+DRFGI   + +Y I++L+ 
Sbjct: 135 DYYIDIVIGEGQTTHAVHVPLPPFTLIGATTLAGQLSAPLRDRFGIVEHMQYYTIDELEQ 194

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           IV R + +   ++  EAA E+A RSRGTPR+A RLL+RVRDFAEV   KTI+ E  + AL
Sbjct: 195 IVLRSSDVFHTSIAPEAAHELARRSRGTPRVANRLLKRVRDFAEVKGEKTISLETTEGAL 254

Query: 251 LRLAIDKMGFDQLDLRYLTMIARN--------FGGGPVGIETISAGLSEPRDAIEDLIEP 302
            +L +D  G DQ D R L  I R         FG   + +  I          IE L EP
Sbjct: 255 KQLQVDDEGLDQTDRRLLRTIDRKDIMVVLLVFGLWQLMLVKIWK-------TIESLYEP 307

Query: 303 YMIQQGF 309
           Y++Q GF
Sbjct: 308 YLLQHGF 314


>gi|325295514|ref|YP_004282028.1| Holliday junction ATP-dependent DNA helicase ruvB
           [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065962|gb|ADY73969.1| Holliday junction ATP-dependent DNA helicase ruvB
           [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 321

 Score =  281 bits (720), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 149/307 (48%), Positives = 199/307 (64%), Gaps = 1/307 (0%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP++L EF GQ      LK+ IE+AK R E LDH+LF GPPG GKTTL+ ++AREL    
Sbjct: 4   RPKSLNEFLGQERVKKILKIAIESAKQRKEPLDHILFYGPPGTGKTTLSMIIARELEKEI 63

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGP 142
           +  S P I K GDL AL+T+L + DVLFIDEIHRL+  VEE +Y AMEDF++D++ GE  
Sbjct: 64  KIVSAPTIEKKGDLLALVTSLNEGDVLFIDEIHRLNRAVEETIYSAMEDFRIDIVTGE-T 122

Query: 143 SARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLA 202
            A+S  I+L +FTLI ATTR+ LLT P + RFGI  RL  Y   +LK I +  +   G+ 
Sbjct: 123 RAKSFSIDLPKFTLIGATTRLNLLTPPFRSRFGIVCRLELYSAIELKEIAKTTSAKLGIR 182

Query: 203 VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQ 262
           +++ A   +A  SRG PRI  +LL+R RD+A V + K I  E A+  L+ L ID  G D 
Sbjct: 183 LSERALEILARCSRGAPRILNQLLKRFRDYATVNNWKEIDSEKANKILMELGIDSYGLDP 242

Query: 263 LDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPI 322
           +D + L  IA  F GGPVG+ T++  L E  D IE++ EPY+I+ G I +TPRGR +   
Sbjct: 243 MDRKILKTIAETFKGGPVGLTTLATVLKEDVDTIENVHEPYLIELGLIVKTPRGRKITSK 302

Query: 323 AWQHLGI 329
           A + LG+
Sbjct: 303 ALKLLGL 309


>gi|194476933|ref|YP_002049112.1| Holliday junction DNA helicase RuvB [Paulinella chromatophora]
 gi|171191940|gb|ACB42902.1| Holliday junction DNA helicase RuvB [Paulinella chromatophora]
          Length = 356

 Score =  281 bits (718), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 148/319 (46%), Positives = 205/319 (64%), Gaps = 1/319 (0%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           N S     ++ LRP++L ++ GQ E    L++ I+AA  +   +DHVL  GP GLGKTT+
Sbjct: 35  NGSTRTLQVNSLRPKSLNDYIGQKELKQILRIAIKAAYTQEGTMDHVLLYGPAGLGKTTI 94

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           A V+A ELGV  R  S P I +  D+  LL NLE  +VLFIDEIHRL+ I EE+LY AME
Sbjct: 95  ALVLAAELGVPCRIISAPAIERPRDIIGLLMNLEPNEVLFIDEIHRLNRISEELLYAAME 154

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           DF+LD+ VG+   AR   I+++ FTL+ ATT  G L+  L+DRFG+  RL+ Y +EDL  
Sbjct: 155 DFRLDISVGKSRVARIRNISINPFTLVGATTHAGALSPALRDRFGLVQRLSLYSLEDLCN 214

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA-HAKTITREIADAA 249
           I++R A +  L + + A  EIA R RGTPRIA RLLRR+RD   +  +   I  E+A+  
Sbjct: 215 IIKRTANILLLTLDEAAVLEIAQRCRGTPRIANRLLRRIRDVTSLRDNDNYINEELANEV 274

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           L    +D  G D  D R L  +  N+GGGPVG++TI+A L E    +E  +EP+++Q GF
Sbjct: 275 LSLHQVDNRGLDANDRRILQFLIENYGGGPVGLQTIAASLGEDATILESFVEPFLMQMGF 334

Query: 310 IQRTPRGRLLMPIAWQHLG 328
           ++RTPRGR++    ++HLG
Sbjct: 335 LKRTPRGRIVTLEGYKHLG 353


>gi|323359953|ref|YP_004226349.1| holliday junction resolvasome, helicase subunit [Microbacterium
           testaceum StLB037]
 gi|323276324|dbj|BAJ76469.1| holliday junction resolvasome, helicase subunit [Microbacterium
           testaceum StLB037]
          Length = 347

 Score =  280 bits (717), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 156/318 (49%), Positives = 210/318 (66%), Gaps = 8/318 (2%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP +L EF GQ +    L++ ++AA+ +  + DH+L  GPPGLGKTTLA +VA E G  
Sbjct: 22  LRPTSLAEFVGQQKVRGQLQLLLDAARIQQRSPDHILLSGPPGLGKTTLAMIVAHESGRP 81

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R +SGP I  AGDLAALL++L   +VLFIDEIHR++   EE+LY AMEDF++D+MVG+G
Sbjct: 82  LRLSSGPAIQHAGDLAALLSSLTPGEVLFIDEIHRMARSAEEMLYLAMEDFRIDIMVGKG 141

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
             A S+ ++LS FTL+ ATTR GLL NPL+DRFG    L +YE E+L+ +V R A +  +
Sbjct: 142 AGATSIPLDLSPFTLVGATTRAGLLPNPLRDRFGFTAHLEYYEPEELERVVSRSASMLDV 201

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD-------AALLRLA 254
            +   A  EIA RSRGTPRIA RLLRRVRD+  V H  +   +  D       AAL    
Sbjct: 202 GLPGTARSEIARRSRGTPRIANRLLRRVRDYL-VVHGPSEGTDDGDADVRTVGAALDLYD 260

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D +G D+LD   L  + R F GGPVG+ T++  + E  + IE ++EPY+++ GF+ RTP
Sbjct: 261 VDAIGLDRLDRAVLDALVRRFRGGPVGLSTLAVAVGEEPETIESVVEPYLVRIGFMGRTP 320

Query: 315 RGRLLMPIAWQHLGIDIP 332
           RGR+  P A+ HLG   P
Sbjct: 321 RGRVATPEAYDHLGAPHP 338


>gi|296122677|ref|YP_003630455.1| Holliday junction DNA helicase RuvB [Planctomyces limnophilus DSM
           3776]
 gi|296015017|gb|ADG68256.1| Holliday junction DNA helicase RuvB [Planctomyces limnophilus DSM
           3776]
          Length = 349

 Score =  280 bits (715), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 147/307 (47%), Positives = 194/307 (63%), Gaps = 1/307 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP  L +  GQ +    L++ + A + R E L H+L  GPPGLGKTTLA  +A+EL V 
Sbjct: 41  LRPSRLADVVGQRKVVERLEIMLAATRMRTEPLSHILLDGPPGLGKTTLALALAKELDVE 100

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGP +A   DL   LTN     +LFIDEIHRL   VEE +YP MEDF++D+++GEG
Sbjct: 101 CQITSGPALAAPKDLLPYLTNASGNSILFIDEIHRLPAAVEEFIYPVMEDFRVDIVLGEG 160

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            +AR++ + L  FT++ ATTR G+LT PL+DRF     L FYE  DL  IV+R A     
Sbjct: 161 LNARTINMKLKPFTIVGATTRSGMLTAPLRDRFTFREHLEFYEEADLAEIVRRNAIKLRT 220

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK-TITREIADAALLRLAIDKMGF 260
            + D +A EIA RSRGTPR +  LLR  RDFA V   +  IT EIA  AL  L ID +G 
Sbjct: 221 KIDDSSALEIARRSRGTPRKSNNLLRWARDFATVKQKEGLITNEIARQALAMLEIDVLGL 280

Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320
           ++ D +YL  I   FGGGP G+  I+  ++ P D +ED +EP++++ GFIQRTPRGR++ 
Sbjct: 281 EEQDRKYLRTIVNVFGGGPAGLAAIAHTMNCPPDTLEDEVEPFLLRCGFIQRTPRGRIVT 340

Query: 321 PIAWQHL 327
                HL
Sbjct: 341 ASGLNHL 347


>gi|269219374|ref|ZP_06163228.1| holliday junction DNA helicase RuvB [Actinomyces sp. oral taxon 848
           str. F0332]
 gi|269211167|gb|EEZ77507.1| holliday junction DNA helicase RuvB [Actinomyces sp. oral taxon 848
           str. F0332]
          Length = 348

 Score =  278 bits (712), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 161/331 (48%), Positives = 218/331 (65%), Gaps = 1/331 (0%)

Query: 3   DREGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           + +G++S   S+ E A  + LRPR L EF GQ    S L + +EAA AR +  DHVL  G
Sbjct: 10  NSKGIVSPAASESERAAEAALRPRQLSEFVGQETVRSQLSLVLEAAVARGKTPDHVLLSG 69

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTL+ ++A E+  + R TSGP I   GDLAA+L++L++ DVLFIDEIHRL+   
Sbjct: 70  PPGLGKTTLSMIIAAEVNGSLRLTSGPAIQNPGDLAAVLSSLQENDVLFIDEIHRLARTA 129

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMEDF++D+MVG+GP A S+ + L  FT++ ATTR GLL  PL+DRFG    L 
Sbjct: 130 EEMLYLAMEDFRVDVMVGKGPGATSIPLPLPPFTVVGATTRAGLLPAPLRDRFGFTGHLE 189

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +YE E+L  IV R A      +  +AA EIA RSRGTPRIA RLLRRV+D+A+V     +
Sbjct: 190 YYEEEELALIVTRNAVKLQANLEADAAHEIASRSRGTPRIANRLLRRVQDWAQVRGNGVL 249

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
               A AAL    +D+ G D+LD   L  +   F GGPVG+ T++  + E  + +E + E
Sbjct: 250 DLAAARAALDVFEVDRRGLDRLDRAVLEAVCVRFRGGPVGLTTLAVSVGEEPETVETVAE 309

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           PY++++GF+ RTPRGR    +A+ HLG+  P
Sbjct: 310 PYLVREGFLLRTPRGRAATRLAFDHLGLPGP 340


>gi|123969357|ref|YP_001010215.1| Holliday junction DNA helicase RuvB [Prochlorococcus marinus str.
           AS9601]
 gi|166231538|sp|A2BTJ7|RUVB_PROMS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|123199467|gb|ABM71108.1| Holliday junction DNA helicase RuvB [Prochlorococcus marinus str.
           AS9601]
          Length = 352

 Score =  278 bits (710), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 146/322 (45%), Positives = 214/322 (66%), Gaps = 4/322 (1%)

Query: 9   SRNVSQE--DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           S+N+ +E  + +++L RP  L+EF GQ +  S+L+V I+A+  R E L+H L  G PGLG
Sbjct: 25  SKNIPEEKRNNNLNLARPLNLKEFIGQEQLKSSLRVAIDASIIRKEPLEHTLLYGQPGLG 84

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTTLA ++A EL    R  + P I +  D+  LL  L++ +VLFIDEIHRL+ + EE+LY
Sbjct: 85  KTTLAFLIAHELNTKCRIATAPAIERPRDIVGLLLGLKEGEVLFIDEIHRLNRLTEELLY 144

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            AMEDF+LDL +G    AR   INL RFTLI ATT++  ++ PL+DRFGI  ++ FY  +
Sbjct: 145 SAMEDFRLDLTMGANRGARCRTINLPRFTLIGATTKLASISAPLRDRFGISQKIEFYTCD 204

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA-HAKTITREI 245
           +LK I+   ++L  L + DEA+ ++A  SRGTPRIA RLLRRVRD+A+V     TI+  +
Sbjct: 205 ELKQIIVNFSRLINLNLEDEASYDLAKISRGTPRIALRLLRRVRDYAQVVMKTNTISVNL 264

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
              AL    ID+ G D LD  YL+ + +N    P+G+++I++GL +    +E ++EPY+I
Sbjct: 265 IKKALNSYQIDEKGLDSLDRHYLSFLNQN-NNIPIGLDSIASGLGDDSSMLEFVVEPYLI 323

Query: 306 QQGFIQRTPRGRLLMPIAWQHL 327
           + GF+ RTPRGRLL  +  +++
Sbjct: 324 KIGFLTRTPRGRLLTALGKKYI 345


>gi|320102186|ref|YP_004177777.1| Holliday junction DNA helicase subunit RuvB [Isosphaera pallida
           ATCC 43644]
 gi|319749468|gb|ADV61228.1| Holliday junction DNA helicase subunit RuvB [Isosphaera pallida
           ATCC 43644]
          Length = 377

 Score =  278 bits (710), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 149/311 (47%), Positives = 198/311 (63%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPR L E  GQ +    L + +EAA+ RAE L H+LF GPPGLGKTT A V+  ELGV 
Sbjct: 45  LRPRRLAEVIGQRKVAERLAIALEAARKRAEPLPHILFDGPPGLGKTTFATVLHNELGVE 104

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
              TSGP + K  D+   LTN  +  +LFIDEIHRL   VEE +YP MEDF++D+++GEG
Sbjct: 105 LAMTSGPALDKKMDVMPYLTNAVEGSILFIDEIHRLPKTVEEFIYPVMEDFRVDVVLGEG 164

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            +AR++ + L RFT+I ATTR G+L+ PL+DRF +   L FY+  DL  IV   A+   +
Sbjct: 165 MAARTINLPLKRFTIIGATTRSGMLSGPLRDRFHLHEHLEFYDAADLARIVTVNARKLKV 224

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  +AA EIA RSRGTPR+A   LR VRDFA       I+  +A  AL    ID+ G D
Sbjct: 225 TLDADAAEEIARRSRGTPRLANARLRWVRDFALARANGHISLSVARDALAMQEIDQEGLD 284

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           + D RYL  + + F GGP G+E I+A ++   D + D +EPYM+++ FI RTPRGR   P
Sbjct: 285 RQDRRYLETLIQVFRGGPTGVEAIAATMNVSVDTLTDEVEPYMLRRRFIVRTPRGRRATP 344

Query: 322 IAWQHLGIDIP 332
             ++ LG+  P
Sbjct: 345 EGYRVLGLTPP 355


>gi|123967037|ref|YP_001012118.1| Holliday junction DNA helicase RuvB [Prochlorococcus marinus str.
           MIT 9515]
 gi|166231537|sp|A2BZ00|RUVB_PROM5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|123201403|gb|ABM73011.1| Holliday junction DNA helicase RuvB [Prochlorococcus marinus str.
           MIT 9515]
          Length = 352

 Score =  276 bits (707), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 138/314 (43%), Positives = 207/314 (65%), Gaps = 2/314 (0%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           + +++++RP + +EF GQ +  S+LK+ I+A+K R EAL+H L  G PGLGKTTLA +++
Sbjct: 34  NKNLNIVRPTSFKEFIGQEQIKSSLKIAIDASKYRKEALEHTLLYGQPGLGKTTLALLIS 93

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
            E+    R  S P I +  D+  LL  L++ ++LFIDEIHRL+ + EE+LY AMEDF+LD
Sbjct: 94  YEMNSKCRVASAPSIERPRDIVGLLLGLKEGEILFIDEIHRLNKLTEELLYSAMEDFRLD 153

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           L +G    AR   INL +FTLI ATT++  ++ PL+DRFG+  ++ FY  ++LK I+   
Sbjct: 154 LTMGANRGARCRTINLPKFTLIGATTKLASISAPLRDRFGLCHKIEFYSNDELKQIIFNF 213

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV-AHAKTITREIADAALLRLA 254
           + L  L +  +A C +A  SRGTPRIA RLL+RVRD+A+V      I+ EI + AL    
Sbjct: 214 SNLINLQLDSDACCSLAKISRGTPRIALRLLKRVRDYAQVMKKTNKISIEIIEKALDSQK 273

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           ID  G D +D ++L+ +  N    P+G+++I+AG+ E    +E ++EPY+IQ GFI RTP
Sbjct: 274 IDNRGLDNVDRKFLSFLKLN-NNNPIGLDSIAAGMGEESSMLEFVVEPYLIQIGFIMRTP 332

Query: 315 RGRLLMPIAWQHLG 328
           RGR L  +  +++ 
Sbjct: 333 RGRKLTSLGKKYIS 346


>gi|126697145|ref|YP_001092031.1| Holliday junction DNA helicase RuvB [Prochlorococcus marinus str.
           MIT 9301]
 gi|166231535|sp|A3PFA5|RUVB_PROM0 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|126544188|gb|ABO18430.1| Holliday junction DNA helicase RuvB [Prochlorococcus marinus str.
           MIT 9301]
          Length = 352

 Score =  276 bits (706), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 143/315 (45%), Positives = 209/315 (66%), Gaps = 2/315 (0%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           + + +++L RP TL+EF GQ +  S+L++ I+A+  R E L+H+L  G PGLGKTTLA +
Sbjct: 32  KRNNNLNLARPLTLKEFIGQEQLKSSLRIAIDASIFRKEPLEHILLYGQPGLGKTTLAFL 91

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +A EL    +  + P I +  D+  LL  L++ +VLFIDEIHRL+ + EE+LY AMEDF+
Sbjct: 92  IAHELNTKCKIATAPAIERPRDIVGLLLGLKEGEVLFIDEIHRLNRLTEELLYSAMEDFR 151

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           LDL +G     R   INL RFTLI ATT++  ++ PL+DRFGI  ++ FY  ++LK I+ 
Sbjct: 152 LDLTMGANKGTRCRTINLPRFTLIGATTKLASISAPLRDRFGISQKIEFYNYDELKQILL 211

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA-HAKTITREIADAALLR 252
             ++L  L + DEA+ ++A  SRGTPRIA RLLRRVRD+A+V     TI+  +   AL  
Sbjct: 212 NFSRLINLNLDDEASYDLAKISRGTPRIALRLLRRVRDYAQVVMKTNTISVNLIKKALNS 271

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
             ID  G D LD  YL+ I +N    P+G+++I+AGL +    +E ++EPY+I+ GF+ R
Sbjct: 272 YQIDDKGLDSLDRHYLSFINQN-NNIPIGLDSIAAGLGDDSSMLEFVVEPYLIKIGFLTR 330

Query: 313 TPRGRLLMPIAWQHL 327
           TPRGRLL  +  +++
Sbjct: 331 TPRGRLLTALGKKYI 345


>gi|294507141|ref|YP_003571199.1| Holliday junction DNA helicase RuvB [Salinibacter ruber M8]
 gi|294343469|emb|CBH24247.1| Holliday junction DNA helicase RuvB [Salinibacter ruber M8]
          Length = 854

 Score =  275 bits (703), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 132/266 (49%), Positives = 187/266 (70%)

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
            TTLA ++A E+G   R++SGPV+ K  D+A +LTNLE+ D+LFIDEIHRLS +VEE LY
Sbjct: 579 NTTLAHIIANEMGARIRTSSGPVLEKPADIAGVLTNLEEGDLLFIDEIHRLSSVVEEYLY 638

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            AMED+++D+++ +GP+AR+V+I+L  FT++ ATTR GLLT PL+ RFGI  R ++Y  +
Sbjct: 639 SAMEDYRIDIVIDQGPNARTVQIDLPPFTMVGATTRKGLLTAPLRARFGIDFRYDYYTAD 698

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
            L+ I QR A++  +  T + A EIA RSRGTPR+A RLLRR RDFAEV     IT+ IA
Sbjct: 699 LLQEITQRSARILDVETTPDGAYEIARRSRGTPRVANRLLRRTRDFAEVEGDGEITKAIA 758

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           D AL  L +D+ G D +D R L  +  NF GGP G++ ++  + E    +E++ EPY+IQ
Sbjct: 759 DRALNALDVDEEGLDDMDARILLTLIDNFDGGPTGLKNLAVSVGEESGTLEEVYEPYLIQ 818

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIP 332
           +GF++RTP+GR+ +  A+ H     P
Sbjct: 819 EGFMERTPQGRVALQRAYDHFDRSSP 844



 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/65 (50%), Positives = 41/65 (63%), Gaps = 1/65 (1%)

Query: 4  REGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
          R   L     + D D+  LLRP++L+EF GQ +   NL VF++AA  R E LDHVL  GP
Sbjct: 5  RSDALKAEADRSDNDVEKLLRPQSLDEFVGQEKIKENLNVFMKAALQRGETLDHVLLSGP 64

Query: 63 PGLGK 67
          PGLGK
Sbjct: 65 PGLGK 69


>gi|289812351|ref|ZP_06542980.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 200

 Score =  274 bits (701), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 130/200 (65%), Positives = 164/200 (82%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L E+ GQ +  S +++FI+AAK R +ALDH+L  GPPGLGKTTLA +VA E+GVN
Sbjct: 1   MRPKLLAEYVGQPQVRSQMEIFIQAAKRRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 60

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS +VEE+LYPAMED+QLD+M+GEG
Sbjct: 61  LRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEG 120

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  RL FY++ DL+ IV R A+  GL
Sbjct: 121 PAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQHIVGRSARHMGL 180

Query: 202 AVTDEAACEIAMRSRGTPRI 221
            ++D+ A E+A R+RGTPRI
Sbjct: 181 EMSDDGALEVARRARGTPRI 200


>gi|78780093|ref|YP_398205.1| Holliday junction DNA helicase B [Prochlorococcus marinus str. MIT
           9312]
 gi|97190199|sp|Q318C6|RUVB_PROM9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|78713592|gb|ABB50769.1| Holliday junction DNA helicase subunit RuvB [Prochlorococcus
           marinus str. MIT 9312]
          Length = 352

 Score =  272 bits (696), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 140/311 (45%), Positives = 205/311 (65%), Gaps = 2/311 (0%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +++L RP T +EF GQ +  S+L++ I+A+  R E L+H L  G PGLGKTTLA ++A+E
Sbjct: 36  NLNLARPITFQEFIGQEKLKSSLRIAIDASIYRKEPLEHTLLYGQPGLGKTTLAFLIAKE 95

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           +    R  + P I +  D+  LL  L++ +VLFIDEIHRL+ + EE+LY AMEDF+LDL 
Sbjct: 96  MNTKCRIATAPAIERPRDIVGLLLGLKEGEVLFIDEIHRLNRLTEELLYSAMEDFRLDLT 155

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
           +G    AR   INL RFTL+ ATT++  ++ PL+DRFGI  ++ FY  ++LK I+   ++
Sbjct: 156 MGANRGARCRTINLPRFTLVGATTKLASISAPLRDRFGISQKIEFYTCDELKQIIDNFSR 215

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA-HAKTITREIADAALLRLAID 256
           L    V DEA+  +A  SRGTPRIA RLLRRVRD+A+V      I+  +   AL    ID
Sbjct: 216 LISFNVDDEASSHLAKISRGTPRIALRLLRRVRDYAQVVKKTNVISVNLIKKALNSYQID 275

Query: 257 KMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRG 316
           + G D +D +YL+ + +N    P G+++I+AGL +    +E ++EPY+IQ GF+ RTPRG
Sbjct: 276 EKGLDYVDRQYLSFLNQN-KNIPTGLDSIAAGLGDDSSMLEFVVEPYLIQIGFLTRTPRG 334

Query: 317 RLLMPIAWQHL 327
           RLL  +  +++
Sbjct: 335 RLLTALGKKYI 345


>gi|319790480|ref|YP_004152113.1| Holliday junction DNA helicase RuvB [Thermovibrio ammonificans
           HB-1]
 gi|317114982|gb|ADU97472.1| Holliday junction DNA helicase RuvB [Thermovibrio ammonificans
           HB-1]
          Length = 320

 Score =  271 bits (694), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 144/307 (46%), Positives = 195/307 (63%), Gaps = 3/307 (0%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP +  EF GQ      LKV +E+AK R E LDH+L  GPPG GKTTLA ++A EL V  
Sbjct: 4   RPSSFAEFIGQEPVKRVLKVAVESAKRRGEPLDHILLYGPPGTGKTTLATILASELRVGL 63

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGP 142
           +  S P + + GDL  +LT L + D+LFIDEIHRL   +EE+LY AMEDF++D++VG   
Sbjct: 64  KLLSAPTVERKGDLLGVLTTLNEGDILFIDEIHRLPRSIEEMLYTAMEDFRVDVIVG--- 120

Query: 143 SARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLA 202
             R+V   L  FTL+ ATTR+ L+T PL+ RFGI  RL  Y   +LK + +RGA+   L 
Sbjct: 121 GKRAVSFELPPFTLVGATTRLNLITPPLRSRFGIVCRLELYSPRELKEVARRGAEKLKLN 180

Query: 203 VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQ 262
           +T+ A   +A  SRGTPRI  ++L+RVRD+A V   + I     +A L  L ID+ G D+
Sbjct: 181 LTEGALELLAGCSRGTPRILNQILKRVRDYATVHGWEVIDAREVEAVLEDLGIDRYGLDR 240

Query: 263 LDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPI 322
           LD + L  IA  F GGPVG+ T+S  L E  D +E + EP++I+ G++ +TPRGR L   
Sbjct: 241 LDRKILETIATTFKGGPVGLSTLSTVLKEDPDTVESVHEPFLIEMGYLVKTPRGRKLTEK 300

Query: 323 AWQHLGI 329
            W+ LG+
Sbjct: 301 GWKALGL 307


>gi|157414222|ref|YP_001485088.1| Holliday junction DNA helicase RuvB [Prochlorococcus marinus str.
           MIT 9215]
 gi|172047297|sp|A8G7C1|RUVB_PROM2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|157388797|gb|ABV51502.1| Holliday junction DNA helicase RuvB [Prochlorococcus marinus str.
           MIT 9215]
          Length = 352

 Score =  270 bits (691), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 141/315 (44%), Positives = 207/315 (65%), Gaps = 2/315 (0%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           +++ +++L RP   +EF GQ +  S+L++ I+A+  R E L+H L  G PGLGKTTLA +
Sbjct: 32  KKNNNLNLARPLNFKEFIGQEQLKSSLRIAIDASIFRKEPLEHTLLYGQPGLGKTTLAFL 91

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +A EL    R  + P I +  D+  LL  L++ +VLFIDEIHRL+ + EE+LY AMEDF+
Sbjct: 92  IAHELKTKCRIATAPAIERPRDIVGLLLGLKEGEVLFIDEIHRLNRLTEELLYSAMEDFR 151

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           LDL +G    AR   INL RFTLI ATT++  ++ PL+DRFGI  ++ FY  ++LK I+ 
Sbjct: 152 LDLTMGANRGARCRTINLPRFTLIGATTKLASISAPLRDRFGISQKIEFYTYDELKQIIV 211

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA-HAKTITREIADAALLR 252
             ++L  L + DEA+ ++A  SRGTPRIA RLLRRVRD+A+V      I+  +   AL  
Sbjct: 212 NFSRLINLNLDDEASYDLAKISRGTPRIALRLLRRVRDYAQVVMKTNNISVNLIKKALNS 271

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
             ID+ G D LD  YL  + +N    P+G+++I+AGL +    +E ++EPY+I+ GF+ R
Sbjct: 272 YQIDEKGLDSLDRNYLFFLNQN-KNIPIGLDSIAAGLGDDSSMLEFVVEPYLIKIGFLTR 330

Query: 313 TPRGRLLMPIAWQHL 327
           TPRGRLL  +  +++
Sbjct: 331 TPRGRLLTALGKKYI 345


>gi|254525738|ref|ZP_05137790.1| Holliday junction DNA helicase RuvB [Prochlorococcus marinus str.
           MIT 9202]
 gi|221537162|gb|EEE39615.1| Holliday junction DNA helicase RuvB [Prochlorococcus marinus str.
           MIT 9202]
          Length = 352

 Score =  270 bits (690), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 141/315 (44%), Positives = 206/315 (65%), Gaps = 2/315 (0%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           + + +++L RP   +EF GQ +  S+L++ I+A+  R E L+H L  G PGLGKTTLA +
Sbjct: 32  KRNNNLNLARPLNFKEFIGQEQLKSSLRIAIDASIFRKEPLEHTLLYGQPGLGKTTLAFL 91

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +A EL    R  + P I +  D+  LL  L++ +VLFIDEIHRL+ + EE+LY AMEDF+
Sbjct: 92  IAHELKTKCRIATAPAIERPRDIVGLLLGLKEGEVLFIDEIHRLNRLTEELLYSAMEDFR 151

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           LDL +G    AR   INL RFTLI ATT++  ++ PL+DRFGI  ++ FY  ++LK I+ 
Sbjct: 152 LDLTMGANRGARCRTINLPRFTLIGATTKLASISAPLRDRFGISQKIEFYTYDELKQIIV 211

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA-HAKTITREIADAALLR 252
             ++L  L + DEA+ ++A  SRGTPRIA RLLRRVRD+A+V      I+  +   AL  
Sbjct: 212 NFSRLINLNLDDEASYDLAKISRGTPRIALRLLRRVRDYAQVVMKTNNISVNLIKKALNS 271

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
             ID+ G D LD  YL  + +N    P+G+++I+AGL +    +E ++EPY+I+ GF+ R
Sbjct: 272 YQIDEKGLDSLDRNYLFFLNQN-KNIPIGLDSIAAGLGDDSSMLEFVVEPYLIKIGFLTR 330

Query: 313 TPRGRLLMPIAWQHL 327
           TPRGRLL  +  +++
Sbjct: 331 TPRGRLLTALGKKYI 345


>gi|33862171|ref|NP_893732.1| Holliday junction DNA helicase B [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|44888407|sp|Q7UZP3|RUVB_PROMP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|33634389|emb|CAE20074.1| Holliday junction DNA helicase RuvB [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 352

 Score =  269 bits (687), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 136/314 (43%), Positives = 204/314 (64%), Gaps = 2/314 (0%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           + +++L RP + +EF GQ +  S+LK+ IEA+K R EAL+H L  G PGLGKTTLA +++
Sbjct: 34  NKNLNLARPNSFKEFIGQEQIKSSLKIAIEASKYRKEALEHTLLYGQPGLGKTTLALLIS 93

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
            E+    +  S P + +  D+  LL  L++ ++LFIDEIHRL+ + EE+LY AMEDF+LD
Sbjct: 94  YEMNTKCKVASAPSLERPRDIVGLLLGLKEGEILFIDEIHRLNKLTEELLYSAMEDFRLD 153

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           L +G     R   INL +FTLI ATT++  ++ PL+DRFG+  ++  Y  ++L  I+   
Sbjct: 154 LTMGANRGTRCRTINLPKFTLIGATTKLASISAPLRDRFGLCHKIELYSNDELHQIIFNF 213

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV-AHAKTITREIADAALLRLA 254
           A L  L + ++A   +A  SRGTPRIA RLL+RVRD+A+V  +   I+ EI + AL    
Sbjct: 214 ATLINLQLENDACSALAKISRGTPRIALRLLKRVRDYAQVIKNTNKISLEIIEKALNSQK 273

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           ID  G D +D ++L+ +  N    P+G+++I+AGL E    +E ++EPY+IQ GFI RTP
Sbjct: 274 IDNKGLDNIDRKFLSFLNLN-NNHPIGLDSIAAGLGEESSMLEFVVEPYLIQIGFIMRTP 332

Query: 315 RGRLLMPIAWQHLG 328
           RGR L  +  +++ 
Sbjct: 333 RGRKLTSLGKKYIS 346


>gi|4586354|dbj|BAA76366.1| ruvB protein [Deinococcus radiodurans]
          Length = 311

 Score =  268 bits (685), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 147/302 (48%), Positives = 195/302 (64%), Gaps = 13/302 (4%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+TL E+ GQ +    L V+++AA+ R EALDH L  GPPGLGKTTLA ++A ELGVN
Sbjct: 11  LRPKTLTEYVGQEKLKDKLGVYLQAARGRREALDHTLLFGPPGLGKTTLAHIIAYELGVN 70

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGP I K GDLA L  +LE+ DVLFIDEIHRL  + EE LYPAMEDF+LD+++G+G
Sbjct: 71  IRVTSGPAIEKPGDLAILTNSLEEGDVLFIDEIHRLGRVAEEHLYPAMEDFKLDIVLGQG 130

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+AR++++ L RFTL+ ATTR GL+T P++  FGI   L +Y  E++ T + R A+L G 
Sbjct: 131 PAARTIELPLPRFTLVGATTRPGLITAPMRRAFGIIEHLEYYTAEEIATNLLRDARLLGF 190

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + +EA  EI  RSRGT RIA             A   T   +   A   + A+DK+G D
Sbjct: 191 GLDEEAGLEIGARSRGTMRIAKACC------GACATTPTWRAKPPSAWNAQSALDKLGLD 244

Query: 262 QLDLRYLTM-IARN----FGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT--P 314
              L      + RN      GGPVG++T++  +SE    +ED+ EPY+IQ GFI+R+  P
Sbjct: 245 SAGLGTTRQEVPRNPDSPLCGGPVGVDTLATAISEDALTLEDVYEPYLIQLGFIKRSTWP 304

Query: 315 RG 316
           RG
Sbjct: 305 RG 306


>gi|238924019|ref|YP_002937535.1| Holliday junction DNA helicase B [Eubacterium rectale ATCC 33656]
 gi|238875694|gb|ACR75401.1| Holliday junction DNA helicase B [Eubacterium rectale ATCC 33656]
          Length = 255

 Score =  268 bits (684), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 123/250 (49%), Positives = 178/250 (71%)

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           +G   + TSGP I K G++AA+L  L + D+LF+DEIHRL+  VEE+LYPAMED+ +D+M
Sbjct: 1   MGTKIKVTSGPAIGKPGEMAAILNGLSEGDILFVDEIHRLNRQVEEVLYPAMEDYAIDIM 60

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
           +G+G SA+S++ NL +FTL+ ATTR G+L+ PL+DRFG+   + FY +++LK I+   AK
Sbjct: 61  IGKGESAKSIRFNLPKFTLVGATTRAGMLSAPLRDRFGVVNHMEFYTVDELKHIIVNSAK 120

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257
           + G+ + D+ A E+A RSRGTPR+A RLL+RVRDFA+V +   IT ++A  AL  L +DK
Sbjct: 121 VLGVEIDDKGAYEMARRSRGTPRLANRLLKRVRDFAQVKYDGKITYDVASFALDLLEVDK 180

Query: 258 MGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317
            G D  D   L  I   F GGPVG++T++A + E    IED+ EPY+++ GFI RTP+GR
Sbjct: 181 YGLDLNDRNILLTIIDKFAGGPVGLDTLAAAIGEDAGTIEDVYEPYLVKNGFINRTPKGR 240

Query: 318 LLMPIAWQHL 327
           +   +A++H 
Sbjct: 241 VATELAFEHF 250


>gi|297516897|ref|ZP_06935283.1| Holliday junction DNA helicase RuvB [Escherichia coli OP50]
          Length = 217

 Score =  262 bits (669), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 125/214 (58%), Positives = 161/214 (75%)

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 2   VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 61

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IV R A+  GL ++D+ A E+A R+RGTPRIA RLLRRVRDFAEV H  
Sbjct: 62  LEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG 121

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           TI+ +IA  AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED+
Sbjct: 122 TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDV 181

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +EPY+IQQGF+QRTPRGR+    AW H GI  P 
Sbjct: 182 LEPYLIQQGFLQRTPRGRMATTRAWNHFGITPPE 215


>gi|323221951|gb|EGA06341.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
          Length = 213

 Score =  261 bits (667), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 128/213 (60%), Positives = 166/213 (77%), Gaps = 1/213 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S   +  ED     +RP+ L E+ GQ +  S +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRLISAGATIAEDVADRAIRPKFLAEYVGQPQVRSQMEIFIQAAKLRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIA 212
           L FY++ DL+ IV R A+  GL ++D+ A E+A
Sbjct: 181 LEFYQVPDLQHIVGRSARHMGLEMSDDGALEVA 213


>gi|317508679|ref|ZP_07966334.1| Holliday junction DNA helicase RuvB [Segniliparus rugosus ATCC
           BAA-974]
 gi|316253000|gb|EFV12415.1| Holliday junction DNA helicase RuvB [Segniliparus rugosus ATCC
           BAA-974]
          Length = 313

 Score =  260 bits (664), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 139/267 (52%), Positives = 185/267 (69%), Gaps = 1/267 (0%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           V + + D SL RPR L++F GQ +    L++ ++ AK+R    DHVLF GPPGLGKT+LA
Sbjct: 23  VGEAELDASL-RPRALDDFIGQPKVREQLRLLLQGAKSRGAVPDHVLFSGPPGLGKTSLA 81

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            +VA ELG   R TSGP + +AGDLAALL+NL + DVLFIDEIHR++   EE+LY AMED
Sbjct: 82  MIVAGELGAALRMTSGPALERAGDLAALLSNLVEGDVLFIDEIHRMARPAEEMLYLAMED 141

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F++D++VG+GP A ++ + L+ FTL+ ATTR G LTNPL+DRFG    + FY  E+L  +
Sbjct: 142 FRVDVVVGKGPGAMAIPLTLAPFTLVGATTRTGALTNPLRDRFGFVGHMEFYTPEELSQV 201

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           + R AK+ G+ +  EAA EIA RSRGTPRIA RLLRRVRD+A+V     +    A AAL 
Sbjct: 202 LARSAKILGVELDAEAAIEIASRSRGTPRIANRLLRRVRDYAQVRGDGFVDLAAAQAALQ 261

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGG 278
              +D++G D+LD   L+ +    GGG
Sbjct: 262 IFDVDELGLDRLDRAVLSALVSGHGGG 288


>gi|330984326|gb|EGH82429.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 330

 Score =  256 bits (655), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 135/305 (44%), Positives = 192/305 (62%), Gaps = 4/305 (1%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPR L +F GQ      L +F+ AA+ R E +DH L  GPPGLGKTTLA ++A E+   
Sbjct: 19  LRPRRLAQFQGQPHLIDQLDIFLSAARLRGEMIDHCLLYGPPGLGKTTLAGIIAEEMDHE 78

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           F ++SGP++ K  D+ +LL       V+FIDEIHR+   VEE+LY AMED  +D++  + 
Sbjct: 79  FLTSSGPLLQKPADVVSLLIQPTAPTVIFIDEIHRMPTQVEELLYSAMEDQHVDILTDD- 137

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
              RS++++L  FTLI ATTR G L+ PL+DRFGI +RLN Y +  L  +V   A+  GL
Sbjct: 138 --RRSIRLHLEPFTLIGATTRQGSLSAPLRDRFGIHLRLNLYGLPQLGQVVLSAAQQLGL 195

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA-ALLRLAIDKMGF 260
            + +  A  IA RSRGTPRIA + LRR+RD+ +     T   +   A AL  + +D+ G 
Sbjct: 196 PLKESQALIIASRSRGTPRIALKNLRRIRDYFQARGEGTGVDDTTIAEALNFMGLDENGL 255

Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320
           +Q D  Y+  +   F G PVG+ +++A L E    +ED IEPY+IQ+G++ RT +GR+ M
Sbjct: 256 NQADRDYINALINTFSGRPVGLSSLAAALGEDVGTLEDSIEPYLIQEGYVSRTSKGRVAM 315

Query: 321 PIAWQ 325
           P A++
Sbjct: 316 PKAYK 320


>gi|213609155|ref|ZP_03368981.1| Holliday junction DNA helicase B [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 203

 Score =  252 bits (643), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 124/202 (61%), Positives = 158/202 (78%), Gaps = 1/202 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S   +  ED     +RP+ L E+ GQ +  S +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRLISAGATIAEDVADRAIRPKLLAEYVGQPQVRSQMEIFIQAAKRRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGL 201
           L FY++ DL+ IV R A+  GL
Sbjct: 181 LEFYQVPDLQHIVGRSARHMGL 202


>gi|32474557|ref|NP_867551.1| Holliday junction DNA helicase RuvB [Rhodopirellula baltica SH 1]
 gi|44888405|sp|Q7UPG4|RUVB_RHOBA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|32445096|emb|CAD75098.1| holliday junction DNA helicase RuvB [Rhodopirellula baltica SH 1]
          Length = 366

 Score =  251 bits (642), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 134/319 (42%), Positives = 196/319 (61%), Gaps = 1/319 (0%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           D D++L RP+ + E  GQ +    L++ I+AA+ R E L H+LF GPPGLGKTT A V+ 
Sbjct: 46  DPDVTL-RPQRMAEMVGQQDVIERLRIAIDAAQVRGEPLGHILFDGPPGLGKTTFATVIP 104

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
            E+    +  +G  +    DL   LTN+    VLFIDEIHR+   +EE LY AMEDF++D
Sbjct: 105 SEMKTTVQMANGAGLKAPRDLLPYLTNVSRGSVLFIDEIHRVPRAIEEYLYTAMEDFRID 164

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           +++GEG +AR++ ++L  FTLI ATTR G+LT PL+DRF I   L +Y  ++L  IV R 
Sbjct: 165 IVLGEGVNARTLNLSLEPFTLIGATTRAGMLTAPLRDRFQIREHLGWYTRKELAEIVLRN 224

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255
           +K   + V   +A  IA RSR TPR+A   L  VRD+A+      +   + +AAL  + I
Sbjct: 225 SKKLNIEVDPTSAGVIADRSRSTPRLANNRLLWVRDYAQSKTKGNVEASVCEAALDMIGI 284

Query: 256 DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR 315
           D +G D+ D  YL  + R F GGP G++ I+  ++   D +ED +EP++++   + RT R
Sbjct: 285 DHLGLDKQDRNYLDTLMRVFLGGPAGLDAIAHTMNVSSDTLEDEVEPFLLRSELLVRTRR 344

Query: 316 GRLLMPIAWQHLGIDIPHR 334
           GRL  P A++H+   +P R
Sbjct: 345 GRLATPKAFEHMKRQMPDR 363


>gi|327543392|gb|EGF29817.1| Holliday junction DNA helicase RuvB [Rhodopirellula baltica WH47]
          Length = 379

 Score =  251 bits (642), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 134/319 (42%), Positives = 196/319 (61%), Gaps = 1/319 (0%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           D D++L RP+ + E  GQ +    L++ I+AA+ R E L H+LF GPPGLGKTT A V+ 
Sbjct: 59  DPDVTL-RPQRMAEMVGQQDVIERLRIAIDAAQVRGEPLGHILFDGPPGLGKTTFATVIP 117

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
            E+    +  +G  +    DL   LTN+    VLFIDEIHR+   +EE LY AMEDF++D
Sbjct: 118 SEMKTTVQMANGAGLKAPRDLLPYLTNVSRGSVLFIDEIHRVPRAIEEYLYTAMEDFRID 177

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           +++GEG +AR++ ++L  FTLI ATTR G+LT PL+DRF I   L +Y  ++L  IV R 
Sbjct: 178 IVLGEGVNARTLNLSLEPFTLIGATTRAGMLTAPLRDRFQIREHLGWYTRKELAEIVLRN 237

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255
           +K   + V   +A  IA RSR TPR+A   L  VRD+A+      +   + +AAL  + I
Sbjct: 238 SKKLNIEVDPTSAGVIADRSRSTPRLANNRLLWVRDYAQSKTKGNVEASVCEAALDMIGI 297

Query: 256 DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR 315
           D +G D+ D  YL  + R F GGP G++ I+  ++   D +ED +EP++++   + RT R
Sbjct: 298 DHLGLDKQDRNYLDTLMRVFLGGPAGLDAIAHTMNVSSDTLEDEVEPFLLRSELLVRTRR 357

Query: 316 GRLLMPIAWQHLGIDIPHR 334
           GRL  P A++H+   +P R
Sbjct: 358 GRLATPKAFEHMKRQMPDR 376


>gi|213580454|ref|ZP_03362280.1| Holliday junction DNA helicase B [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
 gi|289824022|ref|ZP_06543620.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
          Length = 201

 Score =  250 bits (639), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 123/201 (61%), Positives = 157/201 (78%), Gaps = 1/201 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S   +  ED     +RP+ L E+ GQ +  S +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRLISAGATIAEDVADRAIRPKLLAEYVGQPQVRSQMEIFIQAAKRRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTG 200
           L FY++ DL+ IV R A+  G
Sbjct: 181 LEFYQVPDLQHIVGRSARHMG 201


>gi|126659996|ref|ZP_01731119.1| Holliday junction DNA helicase B [Cyanothece sp. CCY0110]
 gi|126618761|gb|EAZ89507.1| Holliday junction DNA helicase B [Cyanothece sp. CCY0110]
          Length = 307

 Score =  250 bits (638), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 123/251 (49%), Positives = 174/251 (69%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           N   ++++   +RP  LE++ GQ    S L + I+AA+ R + LDH+L  GPPGLGKTT+
Sbjct: 47  NKDSDESNAQNIRPHRLEDYIGQESLKSVLNIGIKAARGRKDPLDHLLLYGPPGLGKTTM 106

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           + ++A E+GVN + T+ P + +  D+  LL NL+  DVLFIDEIHRL+ + EE+LYPAME
Sbjct: 107 SLILAEEMGVNCKITAAPALERPRDITGLLVNLKPGDVLFIDEIHRLNRLTEELLYPAME 166

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           D++LD+ +G+G +AR+  I L +FTL+ ATT+VG LT+PL+DRFG+  RL FYE E+L  
Sbjct: 167 DYRLDITIGKGQAARTRSIPLPKFTLVGATTKVGSLTSPLRDRFGLIERLRFYEPEELAL 226

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           I++R AK+  + +T   A EIA RSRGTPRIA RLLRRVRD+  V   ++I  E+A  +L
Sbjct: 227 IIERTAKILDVTITQPGAMEIARRSRGTPRIANRLLRRVRDYQIVHKHQSINEEVASESL 286

Query: 251 LRLAIDKMGFD 261
               +D  G D
Sbjct: 287 DFYQVDPRGLD 297


>gi|121730272|ref|ZP_01682648.1| Holliday junction DNA helicase RuvB [Vibrio cholerae V52]
 gi|121627974|gb|EAX60535.1| Holliday junction DNA helicase RuvB [Vibrio cholerae V52]
          Length = 203

 Score =  249 bits (635), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 119/193 (61%), Positives = 152/193 (78%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           +S +   E+     +RP+ L ++ GQ      +++FI+AA+ R EALDH+L  GPPGLGK
Sbjct: 11  ISNHFKDEEVIDRAIRPKKLADYQGQDHVRDQMEIFIQAAQMRQEALDHLLIFGPPGLGK 70

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127
           TTLA +VA E+GVN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS +VEE+LYP
Sbjct: 71  TTLANIVANEMGVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYP 130

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           AMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  RL +Y++ D
Sbjct: 131 AMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEYYKVAD 190

Query: 188 LKTIVQRGAKLTG 200
           L+ IVQR A+  G
Sbjct: 191 LQHIVQRSAQCLG 203


>gi|323247806|gb|EGA31744.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323255034|gb|EGA38822.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
          Length = 193

 Score =  245 bits (626), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 120/193 (62%), Positives = 153/193 (79%), Gaps = 1/193 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S   +  ED     +RP+ L E+ GQ +  S +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRLISAGATIAEDVADRAIRPKFLAEYVGQPQVRSQMEIFIQAAKLRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIV 192
           L FY++ DL+ IV
Sbjct: 181 LEFYQVPDLQHIV 193


>gi|190149556|ref|YP_001968081.1| holliday junction ATP-dependent DNA helicase RuvB [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|189914687|gb|ACE60939.1| holliday junction ATP-dependent DNA helicase RuvB [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
          Length = 210

 Score =  245 bits (625), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 116/206 (56%), Positives = 154/206 (74%)

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ ATTR G LT+PL+DRFGI  RL FY
Sbjct: 1   MLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQRLEFY 60

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            ++DL +IV+R A    L ++ + A E+A RSRGTPRIA RLLRRVRD+A+V +   IT 
Sbjct: 61  SVDDLTSIVKRSADCLNLNLSPDGAYEVARRSRGTPRIANRLLRRVRDYADVRNNGVITS 120

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           +IA  AL  L +D  GFD +D++ L  I   F GGPVG++ ++A + E RD IED++EPY
Sbjct: 121 DIAKQALAMLDVDSEGFDFMDIKLLQAIVERFDGGPVGLDNLAAAIGEERDTIEDVLEPY 180

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGI 329
           +IQQGF+QRTPRGR+     + HLGI
Sbjct: 181 LIQQGFLQRTPRGRIATSRTYAHLGI 206


>gi|169836082|ref|ZP_02869270.1| Holliday junction DNA helicase B [candidate division TM7
           single-cell isolate TM7a]
          Length = 272

 Score =  243 bits (619), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 124/243 (51%), Positives = 169/243 (69%)

Query: 85  TSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSA 144
           TSG  I +AGDLA++LTNL+D D+LFIDEIHRLS  VEEILY AMED++LD+++G+GP+A
Sbjct: 27  TSGLAIERAGDLASILTNLQDNDILFIDEIHRLSRAVEEILYSAMEDYKLDIIIGKGPAA 86

Query: 145 RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVT 204
           RSV+++L +FT+I ATTR G L  PL+DRFGI  RL FY  + +  I++R A +    + 
Sbjct: 87  RSVRLDLPKFTVIGATTRTGSLAAPLRDRFGIIHRLEFYTPDQVSNIIKRAASILKSNIH 146

Query: 205 DEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLD 264
           D++A  ++ R+R TPRIA RLL+RVRD+A+V     I       AL  L ID++G D  D
Sbjct: 147 DDSARILSTRARLTPRIANRLLKRVRDYADVNGDGIIDVTTTMNALEMLEIDELGLDPAD 206

Query: 265 LRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAW 324
              L+ I  ++G  PVG+ TI+A   +    IED  EPY++Q GFI+RTPRGR + P A 
Sbjct: 207 RHLLSSIVESYGDNPVGLTTIAALTGDEATTIEDFYEPYLLQIGFIERTPRGRRVTPRAR 266

Query: 325 QHL 327
           +HL
Sbjct: 267 KHL 269


>gi|227549155|ref|ZP_03979204.1| Holliday junction DNA helicase B [Corynebacterium lipophiloflavum
           DSM 44291]
 gi|227078775|gb|EEI16738.1| Holliday junction DNA helicase B [Corynebacterium lipophiloflavum
           DSM 44291]
          Length = 247

 Score =  239 bits (609), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 113/210 (53%), Positives = 157/210 (74%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP++L EF GQ +    L + +  A+ R+   DH+L  GPPGLGKTT+A ++A+ELG +
Sbjct: 38  LRPKSLGEFIGQPKVREQLNLVLTGARRRSLTPDHILLSGPPGLGKTTMAMIIAQELGTS 97

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++   EE+LY AMEDF++D++VG+G
Sbjct: 98  LRMTSGPALERAGDLAAMLSNLMEGDVLFIDEIHRIARPAEEMLYMAMEDFRIDVIVGKG 157

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P A S+ + +  FTL+ ATTR G+LT PL+DRFG   ++ FY+++DL +++ R A +  +
Sbjct: 158 PGATSIPLEIPPFTLVGATTRAGMLTGPLRDRFGFTAQMEFYDVDDLTSVITRAATILDV 217

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            +T +AA EIA RSRGTPRIA RLLRRVRD
Sbjct: 218 DITADAAVEIASRSRGTPRIANRLLRRVRD 247


>gi|148983662|ref|ZP_01816981.1| Holliday junction DNA helicase B [Streptococcus pneumoniae
           SP3-BS71]
 gi|147923809|gb|EDK74921.1| Holliday junction DNA helicase B [Streptococcus pneumoniae
           SP3-BS71]
          Length = 191

 Score =  236 bits (603), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 117/186 (62%), Positives = 142/186 (76%)

Query: 50  RAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVL 109
           R EALDHVL  GPPGLGKTT+A V+A ELGVN + TSGPVI KAGDL A+L  LE  DVL
Sbjct: 2   RDEALDHVLLFGPPGLGKTTMAFVIANELGVNLKQTSGPVIEKAGDLVAILNELEPGDVL 61

Query: 110 FIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           FIDEIHRL + VEE+LY AMEDF +D+M+G G  +RSV + L  FTLI ATTR G+L+NP
Sbjct: 62  FIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAGEGSRSVHLELPPFTLIGATTRAGMLSNP 121

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           L+ RFGI   + +Y   DL  IV+R A +  + +T EAA E+A+RSRGTPRIA RLL+RV
Sbjct: 122 LRARFGITGHMEYYAHADLTEIVERTADIFEMEITHEAASELALRSRGTPRIANRLLKRV 181

Query: 230 RDFAEV 235
           RDFA++
Sbjct: 182 RDFAQI 187


>gi|71893770|ref|YP_279216.1| Holliday junction DNA helicase RuvB [Mycoplasma hyopneumoniae J]
 gi|72080740|ref|YP_287798.1| Holliday junction DNA helicase RuvB [Mycoplasma hyopneumoniae 7448]
          Length = 312

 Score =  233 bits (595), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 112/296 (37%), Positives = 182/296 (61%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP + E F GQ +    L++ I +++ R ++LDH+LF GPPG GKTTLA +VA  L   
Sbjct: 1   MRPSSFENFIGQKKLVETLQILISSSQKRKQSLDHILFYGPPGTGKTTLANIVANVLEAK 60

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            +   GP++ K  D+ A+L N+    ++FIDEIH ++  +EE+LY AME+F +DL +G  
Sbjct: 61  IKYVQGPLLEKKSDVLAVLANISPDTIIFIDEIHGINKNIEELLYSAMEEFVIDLQIGVD 120

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
              + +++ L +FTLI A+T++  ++ PLQ+RFG   ++  Y +ED+  I++  + +  L
Sbjct: 121 GERKIMRMKLPQFTLIGASTKLAQISTPLQNRFGYVAKIVDYTLEDMIQIIRNSSAVLKL 180

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  E    IA  S  TPRIA  LL+R+RDFA V +AK I ++I +     + I   G  
Sbjct: 181 KMNTEIIKYIASFSNNTPRIANNLLKRIRDFALVLNAKRIDKDIVNKTFDSIGIYNQGLS 240

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317
           Q+++ YL ++ + F G  V ++ I+  L E R  I ++IEP +I++  I++T RGR
Sbjct: 241 QINIEYLNLLVKIFKGKSVALDVIANVLKEHRQTIINIIEPPLIEKELIEKTSRGR 296


>gi|54020198|ref|YP_115932.1| Holliday junction DNA helicase RuvB [Mycoplasma hyopneumoniae 232]
 gi|68715317|sp|Q600N3|RUVB_MYCH2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|148887010|sp|Q4A7W4|RUVB_MYCH7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|148887011|sp|Q4A9R6|RUVB_MYCHJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|53987371|gb|AAV27572.1| holliday junction DNA helicase [Mycoplasma hyopneumoniae 232]
 gi|144227620|gb|AAZ44505.2| holliday junction DNA helicase RuvB [Mycoplasma hyopneumoniae J]
 gi|144575419|gb|AAZ53775.2| holliday junction DNA helicase RuvB [Mycoplasma hyopneumoniae 7448]
 gi|312601378|gb|ADQ90633.1| Holliday junction ATP-dependent DNA helicase ruvB [Mycoplasma
           hyopneumoniae 168]
          Length = 318

 Score =  233 bits (595), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 112/296 (37%), Positives = 182/296 (61%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP + E F GQ +    L++ I +++ R ++LDH+LF GPPG GKTTLA +VA  L   
Sbjct: 7   IRPSSFENFIGQKKLVETLQILISSSQKRKQSLDHILFYGPPGTGKTTLANIVANVLEAK 66

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            +   GP++ K  D+ A+L N+    ++FIDEIH ++  +EE+LY AME+F +DL +G  
Sbjct: 67  IKYVQGPLLEKKSDVLAVLANISPDTIIFIDEIHGINKNIEELLYSAMEEFVIDLQIGVD 126

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
              + +++ L +FTLI A+T++  ++ PLQ+RFG   ++  Y +ED+  I++  + +  L
Sbjct: 127 GERKIMRMKLPQFTLIGASTKLAQISTPLQNRFGYVAKIVDYTLEDMIQIIRNSSAVLKL 186

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  E    IA  S  TPRIA  LL+R+RDFA V +AK I ++I +     + I   G  
Sbjct: 187 KMNTEIIKYIASFSNNTPRIANNLLKRIRDFALVLNAKRIDKDIVNKTFDSIGIYNQGLS 246

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317
           Q+++ YL ++ + F G  V ++ I+  L E R  I ++IEP +I++  I++T RGR
Sbjct: 247 QINIEYLNLLVKIFKGKSVALDVIANVLKEHRQTIINIIEPPLIEKELIEKTSRGR 302


>gi|125536093|gb|EAY82581.1| hypothetical protein OsI_37802 [Oryza sativa Indica Group]
          Length = 443

 Score =  231 bits (589), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 113/202 (55%), Positives = 148/202 (73%)

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           M D+QLD+M+GEGP+ARS+K++L  FTL+ ATTR G LT+PL+DRFGI  RL FY++ DL
Sbjct: 1   MVDYQLDIMIGEGPTARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQRLEFYQVADL 60

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           + IV R A   GL ++DE A E+A R+RGTPRIA RLLRRVRDFAEV     I+  +A  
Sbjct: 61  QHIVSRSAGCLGLELSDEGAHEVARRARGTPRIANRLLRRVRDFAEVRANGVISGAVAAQ 120

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL  L +D  GFD +D + L  I   F GGPVG++ ++A + E R+ IED+IEP++IQQG
Sbjct: 121 ALDMLNVDAEGFDYMDRKLLLAIIDKFTGGPVGLDNLAAAIGEERETIEDVIEPFLIQQG 180

Query: 309 FIQRTPRGRLLMPIAWQHLGID 330
           FIQRTPRGRL    A++H G++
Sbjct: 181 FIQRTPRGRLATQHAYRHFGLE 202


>gi|206895949|ref|YP_002247233.1| holliday junction DNA helicase RuvB [Coprothermobacter
           proteolyticus DSM 5265]
 gi|206738566|gb|ACI17644.1| holliday junction DNA helicase RuvB [Coprothermobacter
           proteolyticus DSM 5265]
          Length = 320

 Score =  229 bits (583), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 121/299 (40%), Positives = 177/299 (59%)

Query: 27  LEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTS 86
           L+EF GQ  A S++   +EAAK   +  DH+LF GPPGLGKTTLA++VA+E+  NF  T+
Sbjct: 14  LKEFVGQTTAVSSVSFSVEAAKKLGKMPDHMLFFGPPGLGKTTLARLVAQEVAANFVETT 73

Query: 87  GPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARS 146
           G  +    D+  +L +     V FIDEIHR+   VEE+LY  M++  + +MVG+  +AR 
Sbjct: 74  GNSLTNVKDVLNILLSFSRPTVFFIDEIHRIPKSVEELLYAPMDEQVIRVMVGKNKTARI 133

Query: 147 VKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDE 206
           +K +L  FTLI ATT++  L+ P   RF I I  N+Y  E++  I++      GL ++ E
Sbjct: 134 IKFDLQPFTLIGATTKISFLSKPFLSRFSIKISFNYYGEEEIGKIIKEELAQQGLDISAE 193

Query: 207 AACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLR 266
           A  EIA RSRGTPR A ++ RRV ++A + H +T+           L ID+ G   LD  
Sbjct: 194 ALREIAKRSRGTPREALQICRRVVEYAALNHLETLDVGAIIDLFNLLNIDEYGLSPLDKD 253

Query: 267 YLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQ 325
           Y+  +A  F GGP GI  +++ L    + +E ++EPY++  GF+  T RGR L    W+
Sbjct: 254 YIRTLAETFKGGPSGIRVLASALGMDVETLEGVVEPYLMMLGFVTVTSRGRKLTDKGWK 312


>gi|304373059|ref|YP_003856268.1| Holliday junction ATP-dependent DNA helicase ruvB [Mycoplasma
           hyorhinis HUB-1]
 gi|304309250|gb|ADM21730.1| Holliday junction ATP-dependent DNA helicase ruvB [Mycoplasma
           hyorhinis HUB-1]
          Length = 317

 Score =  228 bits (581), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 109/304 (35%), Positives = 185/304 (60%), Gaps = 3/304 (0%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           QE+ +I   RP+  E+F GQ +    LKV I ++K R + LDH+LF G PG GKTTLA +
Sbjct: 2   QENLEI---RPKNFEQFIGQQKLVETLKVLISSSKKRKKPLDHILFYGSPGTGKTTLANI 58

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +A E     +   GP++ K  D+ ++L N+E   ++FIDEIH ++  +EE+LY AME+F 
Sbjct: 59  LATETQSKIKYIQGPLLEKKSDILSMLANVEKGHIIFIDEIHSINKNIEELLYSAMEEFV 118

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           +D+ +G    ++ +++ L  FTL+ A+T++  ++ PL++RFG+  ++  Y  E++K I+Q
Sbjct: 119 IDIQIGVEGESKIMRMKLPEFTLVGASTKISSISLPLKNRFGLTAKIYEYTSEEMKKIIQ 178

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
             + +  + +++E    +   +  TPRIA  LL+R+RDFA V   KTI+++I D     +
Sbjct: 179 NSSNILNIEISEELVHYVVDFTNKTPRIANNLLKRIRDFAIVEDTKTISKDIIDKTFNGI 238

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            I   G +  ++ YL ++A  F    V ++ I   + E ++ I + IEP ++Q   I++T
Sbjct: 239 GIFLNGLNLQNIEYLNLLANVFKRKTVSLDVICGIMKETKENIINNIEPILLQLELIEKT 298

Query: 314 PRGR 317
           PRGR
Sbjct: 299 PRGR 302


>gi|330723323|gb|AEC45693.1| Holliday junction DNA helicase RuvB [Mycoplasma hyorhinis MCLD]
          Length = 317

 Score =  226 bits (577), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 108/304 (35%), Positives = 185/304 (60%), Gaps = 3/304 (0%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           QE+ +I   RP+  E+F GQ +    LKV I +++ R + LDH+LF G PG GKTTLA +
Sbjct: 2   QENLEI---RPKNFEQFIGQQKLVETLKVLISSSRKRKKPLDHILFYGSPGTGKTTLANI 58

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +A E     +   GP++ K  D+ ++L N+E   ++FIDEIH ++  +EE+LY AME+F 
Sbjct: 59  LATETQSKIKYIQGPLLEKKSDILSMLANVEKGHIIFIDEIHSINKNIEELLYSAMEEFV 118

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           +D+ +G    ++ +++ L  FTL+ A+T++  ++ PL++RFG+  ++  Y  E++K I+Q
Sbjct: 119 IDIQIGVEGESKIMRMKLPEFTLVGASTKISSISLPLKNRFGLTAKIYEYTSEEMKKIIQ 178

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
             + +  + +++E    +   +  TPRIA  LL+R+RDFA V   KTI+++I D     +
Sbjct: 179 NSSNILNIEISEELVHYVVDFTNKTPRIANNLLKRIRDFAIVEDTKTISKDIIDKTFNGI 238

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            I   G +  ++ YL ++A  F    V ++ I   + E ++ I + IEP ++Q   I++T
Sbjct: 239 GIFLNGLNLQNIEYLNLLANVFKRKTVSLDVICGIMKETKENIINNIEPILLQLELIEKT 298

Query: 314 PRGR 317
           PRGR
Sbjct: 299 PRGR 302


>gi|313678673|ref|YP_004056413.1| Holliday junction DNA helicase RuvB [Mycoplasma bovis PG45]
 gi|312950367|gb|ADR24962.1| Holliday junction DNA helicase RuvB [Mycoplasma bovis PG45]
          Length = 320

 Score =  225 bits (574), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 110/297 (37%), Positives = 178/297 (59%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           LLRP + +EF GQ +    +K  I+ +  R E LDH+LF GPPG GKTTLA ++  EL  
Sbjct: 5   LLRPTSFKEFIGQKKLIVTVKAMIDGSLHRNEVLDHILFYGPPGTGKTTLASLIGNELNK 64

Query: 81  NFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
                 G ++ K  D+ ++  N+ + D++FIDEIH ++  VEEI+Y AMEDF++D+++G 
Sbjct: 65  KVHYLQGALLEKKSDVLSVFANVNENDIVFIDEIHSINKSVEEIIYNAMEDFKIDIIIGP 124

Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
             +++ +++NL  FTLI ATT++ LL+ P +DRFG+  RL+ Y  E++  I+Q   K   
Sbjct: 125 EGNSKVMRMNLKPFTLIGATTKLNLLSQPFKDRFGLLARLSQYSNEEIVKILQNSKKKLK 184

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGF 260
           +   +E    +A  SR TPRIA  LL+R  DF+   +   I  +        L +  +G 
Sbjct: 185 VETDNEVLMLLAKYSRNTPRIANHLLKRAYDFSLKNNQNIIDAKTTYLTFKHLELFDLGL 244

Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317
           ++  + YL++++ +F    V I+ IS  L+  +D + + IEPY++    I+++PRGR
Sbjct: 245 NKEHIEYLSLLSNSFYDKFVSIDAISGILNMNKDNLINDIEPYLLYLQLIEKSPRGR 301


>gi|315282448|ref|ZP_07870860.1| holliday junction DNA helicase RuvB [Listeria marthii FSL S4-120]
 gi|313613911|gb|EFR87643.1| holliday junction DNA helicase RuvB [Listeria marthii FSL S4-120]
          Length = 218

 Score =  224 bits (571), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 112/209 (53%), Positives = 149/209 (71%)

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EEILYPAMED+ LD+++G GP+ARSV+++L  FTLI ATTR GLL+ PL+DRFG+   L
Sbjct: 4   IEEILYPAMEDYCLDIVIGTGPTARSVRLDLPPFTLIGATTRAGLLSAPLRDRFGVIDHL 63

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  E L  IV R + +    + +  A EIA RSRGTPRIA RLL+RVRDFA+V    T
Sbjct: 64  EFYTEEQLTEIVLRTSSILDTKIDELGAREIARRSRGTPRIANRLLKRVRDFAQVRGNGT 123

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +T ++A  AL  L +D  G D +D + L  I ++F GGPVG++TI+A + E R+ IED+ 
Sbjct: 124 VTEKLAKEALTLLQVDPRGLDTIDQKLLHTIIQSFRGGPVGLDTIAASIGEERETIEDMQ 183

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           EPY++Q GF+QRTPRGR+    A+ HLGI
Sbjct: 184 EPYLLQIGFLQRTPRGRIATETAYNHLGI 212


>gi|207093068|ref|ZP_03240855.1| Holliday junction DNA helicase B [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 209

 Score =  223 bits (567), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 101/189 (53%), Positives = 145/189 (76%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP   E+F GQ +  SNL++ I AAK R E+LDH+LF GPPGLGKT+++ ++A+E+  N
Sbjct: 21  LRPNLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + T+ P+I K+GDLAA+LTNL+ +D+LFIDEIHRLS  +EE+LYPAMEDF+LD+++G G
Sbjct: 81  IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSG 140

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+A+++KI+L  FTLI ATTR G+L+NPL+DRFG+  R+ FY   +L  I+++ A     
Sbjct: 141 PAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAIKLNQ 200

Query: 202 AVTDEAACE 210
            + +E+A E
Sbjct: 201 DIKEESADE 209


>gi|291320152|ref|YP_003515413.1| Holliday junction DNA helicase RuvB [Mycoplasma agalactiae]
 gi|290752484|emb|CBH40456.1| Holliday junction DNA helicase ruvB [Mycoplasma agalactiae]
          Length = 320

 Score =  222 bits (565), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 110/297 (37%), Positives = 175/297 (58%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           LLRP   +EF GQ +    LK  I+ +  R E LDH+LF GPPG GKTTLA ++  EL  
Sbjct: 5   LLRPTCFKEFIGQKKLIITLKAMIDGSLHRNETLDHILFYGPPGTGKTTLASLIGNELNK 64

Query: 81  NFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
                 G ++ K  D+ ++  N+ + D++FIDEIH ++  VEEI+Y AMEDF++DL++G 
Sbjct: 65  KVHYLQGALLEKKSDVLSVFANVNENDIVFIDEIHSINKAVEEIIYNAMEDFKIDLIIGP 124

Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
             +++ +++NL  FTLI ATT++ LL+ P +DRFG+  RL+ Y  E++  I+Q   K   
Sbjct: 125 EGNSKVMRMNLKPFTLIGATTKLNLLSQPFKDRFGLLARLSQYSNEEIVKILQNSKKKLK 184

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGF 260
           +    +    +A  SR TPRIA  LL+R  DF+   +   I  +        L +  +G 
Sbjct: 185 VETDSDVLMLLAKYSRNTPRIANHLLKRAYDFSLKNNQSIIDAKTTYLTFKHLELFDLGL 244

Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317
           ++  + YL++++ +F    V I+ IS  L+  ++ +   IEPY++    I+++PRGR
Sbjct: 245 NKEHIEYLSLLSNSFYDKFVSIDAISGILNMSKENLISDIEPYLLYLQLIEKSPRGR 301


>gi|148377490|ref|YP_001256366.1| Holliday junction DNA helicase B [Mycoplasma agalactiae PG2]
 gi|148291536|emb|CAL58922.1| Holliday junction DNA helicase ruvB [Mycoplasma agalactiae PG2]
          Length = 320

 Score =  221 bits (564), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 109/297 (36%), Positives = 177/297 (59%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           LLRP + +EF GQ +    LK  I+ +  R E LDH+LF GPPG GKTTLA ++  EL  
Sbjct: 5   LLRPTSFKEFIGQKKLIITLKAMIDGSLHRNEVLDHILFYGPPGTGKTTLASLIGNELNK 64

Query: 81  NFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
                 G ++ K  D+ ++  N+ + D++FIDEIH ++  VEEI+Y AMEDF++DL++G 
Sbjct: 65  RVHYLQGALLEKKSDVLSVFANVNENDIVFIDEIHSINRAVEEIIYNAMEDFKIDLIIGP 124

Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
             +++ +++NL  FTL+ ATT++ LL+ P +DRFG+  RL+ Y  E++  I+Q   K   
Sbjct: 125 EGNSKVMRMNLKPFTLVGATTKLNLLSQPFKDRFGLLARLSQYSNEEIVKILQNSKKKLK 184

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGF 260
           +    +    +A  SR TPRIA  LL+R  DF+   +   I  +        L +  +G 
Sbjct: 185 VETDSDVLMLLAKYSRNTPRIANHLLKRAYDFSLKNNQSIIDAKTTYLTFKHLELFDLGL 244

Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317
           ++  + YL++++ +F    V I+ IS  L+  ++ + + IEPY++    I+++PRGR
Sbjct: 245 NKEHIEYLSLLSNSFYDKFVSIDAISGILNMSKENLINDIEPYLLYLQLIEKSPRGR 301


>gi|144900758|emb|CAM77622.1| Holliday junction DNA helicase RuvB [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 195

 Score =  219 bits (558), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 99/178 (55%), Positives = 137/178 (76%)

Query: 156 LIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRS 215
           ++ ATTR GLLT PL++RFGIP R+N+Y  ++L+ IV RGA++ G  VT + A E+A R+
Sbjct: 1   MVGATTRSGLLTTPLRERFGIPCRMNYYXPQELELIVARGARVLGFDVTPDGAAEVARRA 60

Query: 216 RGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNF 275
           RGTPR+AGRLLRRVRDFA VA    +  ++AD AL RL +D+MG D +D RYL  IA N+
Sbjct: 61  RGTPRVAGRLLRRVRDFAAVAGQSPVDAQVADRALTRLEVDQMGLDAMDRRYLKCIADNY 120

Query: 276 GGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           GGGPVG++T++A LSE RD +E+++EPY++QQG IQRTPRGR+L    ++H+G++ P 
Sbjct: 121 GGGPVGVDTLAAALSESRDTLEEVVEPYLLQQGLIQRTPRGRMLSAAGFKHIGLNPPS 178


>gi|325973631|ref|YP_004250695.1| holliday junction ATP-dependent DNA helicase, RuvB [Mycoplasma suis
           str. Illinois]
 gi|325990083|ref|YP_004249782.1| Holliday junction ATP-dependent DNA helicase RuvB [Mycoplasma suis
           KI3806]
 gi|323575168|emb|CBZ40830.1| Holliday junction ATP-dependent DNA helicase RuvB [Mycoplasma suis]
 gi|323652233|gb|ADX98315.1| holliday junction ATP-dependent DNA helicase, RuvB [Mycoplasma suis
           str. Illinois]
          Length = 319

 Score =  217 bits (552), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 116/315 (36%), Positives = 182/315 (57%), Gaps = 10/315 (3%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           + D+   RP  L EF G+ E   +L++ IE AK   + L+H L  GPPG+GKT+LAQ++A
Sbjct: 2   NLDLLHTRPTNLSEFIGKPEIVKSLRIGIEVAKKLNKPLEHTLLYGPPGVGKTSLAQIIA 61

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
            E+ VN +      I    DL  +L +L D DVLFIDEIH L +   E+LY A+ED  LD
Sbjct: 62  NEMEVNIKIVPSTNIQTLPDLIGILNSLNDFDVLFIDEIHSLKLEYSEMLYSALEDNVLD 121

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           L++G+  +++++++NL +FTLIAATT +G L   L++RFG    ++ Y  E+L  +++R 
Sbjct: 122 LLIGKNYNSKTIRVNLPKFTLIAATTNLGALPKALEERFGYVFFIDCYTEEELIVLIKRV 181

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255
            K+  L ++++    I   SRG PR A R+LRRV D+  + +   I   I +   +    
Sbjct: 182 TKMWNLELSEKEILTIVYNSRGIPRNANRILRRVLDYKTINNECEIQEIIKECGFIY--- 238

Query: 256 DKMGFDQLDLRYLTMIAR--NFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
             MG  + D++YL  +    NF     GI++I  G +     +   IEPY++ +G+I +T
Sbjct: 239 --MGLTETDIKYLNFLKESLNFTS---GIKSIVQGTNIDESTLIKKIEPYLVSKGYISKT 293

Query: 314 PRGRLLMPIAWQHLG 328
            +GR+L     + LG
Sbjct: 294 NKGRILTDSGEKILG 308


>gi|308126387|ref|ZP_07663742.1| holliday junction ATP-dependent DNA helicase RuvB [Vibrio
           parahaemolyticus AQ4037]
 gi|308109586|gb|EFO47126.1| holliday junction ATP-dependent DNA helicase RuvB [Vibrio
           parahaemolyticus AQ4037]
          Length = 201

 Score =  216 bits (551), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 102/153 (66%), Positives = 128/153 (83%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L ++ GQ      +++FI+AA+ R+EALDH+L  GPPGLGKTTLA +VA E+ VN
Sbjct: 25  IRPKKLADYQGQDHVRDQMEIFIKAAQLRSEALDHLLIFGPPGLGKTTLANIVANEMEVN 84

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS +VEE+LYPAMED+QLD+M+GEG
Sbjct: 85  IRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQLDIMIGEG 144

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRF 174
           P+ARS+KI+L  FTLI ATTR G LT+PL+DR 
Sbjct: 145 PAARSIKIDLPPFTLIGATTRAGSLTSPLRDRL 177


>gi|294155533|ref|YP_003559917.1| Holliday junction DNA helicase [Mycoplasma crocodyli MP145]
 gi|291600218|gb|ADE19714.1| Holliday junction DNA helicase [Mycoplasma crocodyli MP145]
          Length = 314

 Score =  216 bits (550), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 108/296 (36%), Positives = 173/296 (58%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP   +EF GQ +    LK  I +A  +   LDH+LF GPPG GKT+LA ++A E    
Sbjct: 5   LRPSNFKEFIGQNKIKETLKAMIISANTQKRVLDHILFYGPPGTGKTSLATIIANEQNAI 64

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
                   I K  DL ++L+ +   D+LFIDE+H L+ ++EE+LY AMEDF  D+++G  
Sbjct: 65  IHYVQASNIDKKSDLVSILSTINHGDILFIDEVHGLNKVIEELLYNAMEDFVFDILIGTE 124

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            +A+++++ +  FTLIAATT++ L++ PL+DRFG   +LN YE+ +L  I++  AK   +
Sbjct: 125 ENAKTIRMKIKPFTLIAATTKLNLISQPLKDRFGFIAKLNNYELIELVRILKNSAKALKI 184

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + +  A  I   SR TPRIA  LLRRV DF    + + I  +I +     L + + G  
Sbjct: 185 EIGESEANLICSYSRQTPRIANNLLRRVNDFKIANNKELIDFKIIEKTFDNLELYEFGLT 244

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317
           +  + YL ++  +F      ++T+   L+  +D + + +EP ++  G I+++ RGR
Sbjct: 245 KDHIEYLDLLRNSFDEKWASLDTMCGLLNLEKDNLLNEVEPILLYYGLIKKSSRGR 300


>gi|240047399|ref|YP_002960787.1| Holliday junction DNA helicase RuvB [Mycoplasma conjunctivae
           HRC/581]
 gi|239984971|emb|CAT04964.1| Holliday junction ATP-dependent DNA helicase r [Mycoplasma
           conjunctivae]
          Length = 321

 Score =  215 bits (548), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 110/304 (36%), Positives = 175/304 (57%), Gaps = 3/304 (0%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           QE+ +I   RP + E F GQ +    LKV IE+++ R + LDHVLF GPPG GKTTLA +
Sbjct: 2   QENLEI---RPTSFEGFIGQKKIVQTLKVLIESSQKRKKTLDHVLFHGPPGTGKTTLANI 58

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +A  +    +   GP++ K  D+ A+L N+    V+FIDEIH ++  +EE+LY AME+F 
Sbjct: 59  IASMVNTKIKYVQGPLLEKKADVLAMLANITKDSVIFIDEIHGINKNIEELLYSAMEEFV 118

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           +DL +G     + +++ L  FTLI A+T++  ++ PLQ+RFG   ++  Y  ED++ I+ 
Sbjct: 119 IDLQIGVDGENKIMRMKLPNFTLIGASTKLSQISTPLQNRFGFIAKITEYSNEDMRQIIY 178

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
             AK   + +       I   +  TPRIA  LL+R+RDFA V + + I   I +     +
Sbjct: 179 NSAKKLHINLGASEIDYIVNFTNKTPRIANNLLKRIRDFALVQNIEKIDINIINKTFDSI 238

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            + K G  +  + YL ++   F    V ++ +   L E R  I  +IEP ++++ +I++T
Sbjct: 239 GVYKNGLSETSVEYLKILHYIFKDKSVALDVLVGILKESRQTIIHIIEPLLVEKFYIEKT 298

Query: 314 PRGR 317
            RGR
Sbjct: 299 IRGR 302


>gi|328471548|gb|EGF42429.1| Holliday junction DNA helicase RuvB [Lactobacillus rhamnosus MTCC
           5462]
          Length = 216

 Score =  215 bits (547), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 101/205 (49%), Positives = 142/205 (69%)

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           MEDF +D++VG+GP+A  V   L  FTLI ATTR G+L+ PL+DRFGI   + +Y  +DL
Sbjct: 1   MEDFYIDIVVGQGPTAHPVHFPLPPFTLIGATTRAGMLSAPLRDRFGISEHMAYYSPDDL 60

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             IV+R A +  +A+  E A EIA RSRGTPR+A RLL+R+RDFAEVA    +   + D 
Sbjct: 61  SEIVKRSANVFNMAIDAEGAYEIARRSRGTPRVANRLLKRIRDFAEVAGKSPVDLAMVDH 120

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL +L +D  G DQ+D + LT + R++ GGPVG+ TI+A + E    IE++ EPY++Q G
Sbjct: 121 ALDQLQVDAQGLDQIDRKLLTFMIRDYQGGPVGLSTIAANIGEEMATIEEMYEPYLLQIG 180

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIPH 333
           F++RTPRGR++ P  + H+GI +P 
Sbjct: 181 FLKRTPRGRMVTPAGFAHMGITMPQ 205


>gi|299782996|gb|ADJ40994.1| Holliday junction DNA helicase RuvB [Lactobacillus fermentum CECT
           5716]
          Length = 213

 Score =  211 bits (538), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 103/206 (50%), Positives = 141/206 (68%)

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LY AMEDF +D++VGEGP+A  V   L  FTLI ATTR GLL  PL+DRFGI  R+++Y
Sbjct: 1   MLYSAMEDFYIDIVVGEGPTAHPVHFPLPPFTLIGATTRAGLLAAPLRDRFGIVARMDYY 60

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
              +L  I+ R A +    + ++ A E+A+RSRGTPRIA RLL+RVRDFA+V     I  
Sbjct: 61  TTTELSQIIDRSATIFNTKIQEDGAHELALRSRGTPRIANRLLKRVRDFAQVGGQAAIDP 120

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
              D AL  LA+D  G D++D + LT +  ++ GGPVGI TI+A + E  + IE++ EPY
Sbjct: 121 ATVDRALDLLAVDDQGLDEIDRKLLTTMIEHYHGGPVGIRTIAANIGEEVNTIEEMYEPY 180

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGI 329
           ++Q GF+ RTPRGR++ P A++HL I
Sbjct: 181 LLQIGFLMRTPRGRVVTPAAYEHLKI 206


>gi|15829129|ref|NP_326489.1| Holliday junction DNA helicase B [Mycoplasma pulmonis UAB CTIP]
 gi|20140190|sp|Q98PR1|RUVB_MYCPU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|14090073|emb|CAC13831.1| HOLLIDAY JUNCTION DNA HELICASE RUVB [Mycoplasma pulmonis]
          Length = 315

 Score =  210 bits (535), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 98/296 (33%), Positives = 178/296 (60%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+   +F GQ +    LKV I +A+ +   LDH+LF G PG GKT+LA +++  L   
Sbjct: 7   IRPKNFSDFVGQNKLKKLLKVMISSAQVQNRPLDHILFYGNPGTGKTSLASIISNSLNSR 66

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            +   G ++ K  D+  L  ++E+ D++F+DEIH ++  +EE+LY  +EDF +D+++G  
Sbjct: 67  IKYAQGNLLDKKTDILTLFASVEENDIIFVDEIHAINKNIEELLYSILEDFVVDIVIGVE 126

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            +++ +++NL  FT I ATT++  ++ PL+DRFG+  +++ Y++ED++ I++  +K   +
Sbjct: 127 SNSKIMRLNLKPFTFIGATTQINRISKPLRDRFGLIGQISNYQVEDIEKIIKNNSKKLNI 186

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + ++A   IA+ S+  PR+A  LL+R +DF      + I  ++ +  L +L I + G +
Sbjct: 187 QIDEKATNLIALYSQNIPRLAINLLKRTKDFCIYEECQIIDYKLVNKTLKQLGIYENGLN 246

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317
           +  ++YL  ++  F    V ++ I   LS  ++ I   IEP +I    I +TPRGR
Sbjct: 247 ESQVKYLRSLSETFYKKAVSLDLIVGFLSLQKETIISEIEPLLISNNLIVKTPRGR 302


>gi|172046793|sp|Q4A6N6|RUVB_MYCS5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|144574985|gb|AAZ43585.2| holliday junction DNA helicase RuvB [Mycoplasma synoviae 53]
          Length = 316

 Score =  208 bits (530), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 106/301 (35%), Positives = 171/301 (56%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           + + RP   E F GQ    S LK  IE++K + + L+H+LF G PG+GKT+LA ++A E 
Sbjct: 1   MQITRPHNFETFIGQKNLISTLKAMIESSKKQNKVLNHILFYGMPGMGKTSLAGIIANET 60

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138
                   G  + K  DL  +L+ + + D++FIDEIH ++  + E LY AMEDF  DL++
Sbjct: 61  KNKIHFIQGSNLEKKSDLINILSVINENDIVFIDEIHSINKNIIEFLYSAMEDFVFDLII 120

Query: 139 GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKL 198
           G   +A+++++ +  FTLI ATT++  +  P +DRFG   R   Y  ED+K I++   KL
Sbjct: 121 GTESNAKALRMKIKPFTLIGATTKINEMAQPFKDRFGYIARFVSYNAEDMKQIIRNSIKL 180

Query: 199 TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKM 258
             + + +E    +A  SR TPRI   LL R+ DFA V +A  I ++I       L + + 
Sbjct: 181 LNINLGEEHFDFVASYSRNTPRIVNHLLERINDFAIVKNAGIIDKKIIKKTFKSLDLYEY 240

Query: 259 GFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRL 318
           G  +  + YL ++   F   PV ++T+S  L  P++ + + IEP ++    I +T +GR+
Sbjct: 241 GLTKDHVEYLQLLRDGFDSKPVSLDTLSGVLIHPKEVLVNEIEPILLYLKLITKTSKGRM 300

Query: 319 L 319
           +
Sbjct: 301 I 301


>gi|331703542|ref|YP_004400229.1| Holliday junction DNA helicase RuvB [Mycoplasma mycoides subsp.
           capri LC str. 95010]
 gi|328802097|emb|CBW54251.1| Holliday junction DNA helicase RuvB [Mycoplasma mycoides subsp.
           capri LC str. 95010]
          Length = 307

 Score =  208 bits (530), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 106/297 (35%), Positives = 179/297 (60%), Gaps = 3/297 (1%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           + RP   EE+ GQ    +NLKVFI++AK + + +DH+   GP G GKT+LA ++A++L  
Sbjct: 1   MFRPEKWEEYIGQTNILNNLKVFIKSAKKQNKVVDHIFIYGPSGYGKTSLAYLLAKQLKT 60

Query: 81  NFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           N R  +GP + KA D+ ++LT+++++DVLFIDEIH ++  V EI+YP +E+ +L++++G+
Sbjct: 61  NIRILNGPNLQKASDIISILTSIKEKDVLFIDEIHAVNKEVLEIIYPVLEENKLNIIIGK 120

Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
             +++ V I+L +FT+I ATT +  +  PL +RF I   +  Y +ED+  IV+       
Sbjct: 121 DYNSKVVNIDLPKFTIICATTEINKIPLPLLNRFPINFTMQEYNLEDMSKIVELYCNKFQ 180

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGF 260
           + +       +A   R TPRIA  L++R++D     + K I        L +L I ++G 
Sbjct: 181 IKLDQNIYLYLASFCRKTPRIAINLIKRIKDHIICDNPKIIDINYIKKVLEKLEIYELGL 240

Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317
              ++ YL MIA+N     +G++ I+  L+     I + IEP++I++  I RT +GR
Sbjct: 241 TITEINYLKMIAKN---KRIGLDNIAHLLNTTPLIIANNIEPFLIRESLIIRTIKGR 294


>gi|256384432|gb|ACU79002.1| holliday junction ATP-dependent DNA helicase RuvB [Mycoplasma
           mycoides subsp. capri str. GM12]
 gi|256385264|gb|ACU79833.1| holliday junction ATP-dependent DNA helicase RuvB [Mycoplasma
           mycoides subsp. capri str. GM12]
 gi|296455986|gb|ADH22221.1| holliday junction ATP-dependent DNA helicase RuvB [synthetic
           Mycoplasma mycoides JCVI-syn1.0]
          Length = 307

 Score =  207 bits (528), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 106/297 (35%), Positives = 179/297 (60%), Gaps = 3/297 (1%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           + RP   EE+ GQ     NLKVFI++AK + + +DH+   GP G GKT+LA ++A++L  
Sbjct: 1   MFRPEKWEEYIGQTNILDNLKVFIKSAKKQNKVVDHIFIYGPSGYGKTSLAYLLAKQLKT 60

Query: 81  NFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           N R  +GP + KA D+ ++LT+++++DVLFIDEIH ++  V EI+YP +E+ +L++++G+
Sbjct: 61  NIRILNGPNLQKASDIISILTSIKEKDVLFIDEIHAVNKEVLEIIYPVLEENKLNIIIGK 120

Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
             +++ V I+L +FT+I ATT +  +  PL +RF I   +  Y +ED+  IV+       
Sbjct: 121 DYNSKVVNIDLPKFTIICATTEINKIPLPLLNRFPINFTMQEYNLEDMSKIVELYCNKFQ 180

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGF 260
           + +  +    +A   R TPRIA  L++R++D     + K I        L +L I ++G 
Sbjct: 181 IKLDQDIYLYLASFCRKTPRIAINLIKRIKDHIICDNPKLIDINYIKKVLEKLEIYELGL 240

Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317
              ++ YL MIA+N     +G++ I+  L+     I + IEP++I++  I RT +GR
Sbjct: 241 TITEINYLKMIAKN---KRIGLDNIAHLLNTTPLIIANNIEPFLIRESLIIRTIKGR 294


>gi|269114959|ref|YP_003302722.1| holliday junction DNA helicase ruvB [Mycoplasma hominis]
 gi|268322584|emb|CAX37319.1| Holliday junction DNA helicase ruvB [Mycoplasma hominis ATCC 23114]
          Length = 317

 Score =  206 bits (524), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 104/303 (34%), Positives = 175/303 (57%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRS 84
            + +EF GQ +  S +K+ IE+AK + + +DH+LF GPPGLGKTTLA+++++E   N   
Sbjct: 8   NSFDEFVGQEKLISTIKIIIESAKVQKKQIDHLLFYGPPGLGKTTLAKIISKETKSNIVY 67

Query: 85  TSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSA 144
             GP+I K  D+  + +++ D D++FIDEIH ++  +EE+ Y A+E+  +D+ +G     
Sbjct: 68  VQGPLIEKKSDVLTIFSSINDNDIIFIDEIHGINKNIEELFYSALEEGTIDVALGVDGDK 127

Query: 145 RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVT 204
           + +++ L +F LIAATT++ LL+ PL+DRFG   +L+ Y   ++  I+   A    + + 
Sbjct: 128 KIMRMKLKKFCLIAATTKINLLSKPLKDRFGYIGKLSDYSDLEIAKIIFNSATKNKIKIK 187

Query: 205 DEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLD 264
           ++A   IA+ SR TPR+A  LL+RV DFA       I  E    A   L I   G     
Sbjct: 188 NDAINFIAIHSRQTPRVANTLLKRVNDFAIYYKIDLIDLETVKKAFSYLGIYLYGLYSPQ 247

Query: 265 LRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAW 324
           + YL  + + F      ++ IS+ + + +  I + IEP ++    I+++PRGR +     
Sbjct: 248 IEYLKTLHKVFNDKFSSLDAISSIIKDDKYTILNDIEPILLIYKLIEKSPRGRKITNNGI 307

Query: 325 QHL 327
           ++L
Sbjct: 308 EYL 310


>gi|31544807|ref|NP_853385.1| Holliday junction ATP-dependent DNA helicase RuvB [Mycoplasma
           gallisepticum str. R(low)]
 gi|31541653|gb|AAP56953.1| Holliday junction ATP-dependent DNA helicase ruvB [Mycoplasma
           gallisepticum str. R(low)]
 gi|284930881|gb|ADC30820.1| Holliday junction ATP-dependent DNA helicase ruvB [Mycoplasma
           gallisepticum str. R(high)]
          Length = 306

 Score =  205 bits (522), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 115/313 (36%), Positives = 183/313 (58%), Gaps = 14/313 (4%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           + L RP   +EF G+ E    L  FI A+ ++ +ALDHVLF GPPG+GKT+LAQ++A EL
Sbjct: 1   MKLARPNNFDEFIGKNELKQKLLTFINASISQNKALDHVLFYGPPGVGKTSLAQIIANEL 60

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138
               +      I K  DL    + L   DVLFIDEIH LS  + E+L+P MED+ +D+++
Sbjct: 61  KSKIKILQASQIQKPADLLNAFSLLSKNDVLFIDEIHSLSPTIMELLFPIMEDYVVDILI 120

Query: 139 GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKL 198
           G+  +++  ++ L  FTLI ATT  G + +PL++RFGI ++L++Y+ +++  I++     
Sbjct: 121 GKEFNSKFTRMKLPPFTLIGATTMYGRIIDPLEERFGILLQLDYYQDDEIFEIIRSINAK 180

Query: 199 TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL-RLAIDK 257
             + +T +   +IA  S+GTPR A R+ +RV DF      K   +EI   ++L +L I +
Sbjct: 181 EKIKLTKDEMVQIAEHSKGTPRNALRIYKRVMDF------KLFDQEITIKSILEKLNIYQ 234

Query: 258 MGFDQLDLRYLTMIARNFGGGP---VGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
            G   LDL YL    ++F   P   +G++++S         IE  IEPY+++   I++T 
Sbjct: 235 YGLSNLDLEYL----KSFDDNPKLYLGLKSLSLISGIDCFTIESKIEPYLLKMNLIKKTS 290

Query: 315 RGRLLMPIAWQHL 327
           +GR +   A Q+ 
Sbjct: 291 KGRQITQKAIQYF 303


>gi|313665318|ref|YP_004047189.1| holliday junction DNA helicase RuvB C-terminal domain protein
           [Mycoplasma leachii PG50]
 gi|312949948|gb|ADR24544.1| holliday junction DNA helicase RuvB C-terminal domain protein
           [Mycoplasma leachii PG50]
          Length = 307

 Score =  204 bits (518), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 103/297 (34%), Positives = 178/297 (59%), Gaps = 3/297 (1%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           + RP   EE+ GQ     NLKVFI++AK + + +DH+   GP G GKT+LA ++A++L  
Sbjct: 1   MFRPEKWEEYIGQNNILDNLKVFIKSAKKQNKVVDHIFIYGPSGYGKTSLAYLLAKQLKT 60

Query: 81  NFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           N R  +G  + KA D+ ++LT+++++DVLFIDEIH ++  + EI+YP +E+ +L++++G+
Sbjct: 61  NIRILNGSNLQKASDIISILTSIKEKDVLFIDEIHAVNKEILEIIYPVLEENKLNIIIGK 120

Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
             +++ V I+L +FT++ ATT +  +  PL +RF I   +  Y +ED+  IV+       
Sbjct: 121 DYNSKVVNIDLPKFTIVCATTEINKMPIPLLNRFPINFTMQEYNLEDMSKIVELYCNKFQ 180

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGF 260
           + +  +    +A   R TPRIA  L++R++D     + K I        L +L I ++G 
Sbjct: 181 IKLDQDIYLYLASFCRKTPRIAINLIKRIKDHIICDNPKKIDIHYIKKVLEKLEIYELGL 240

Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317
              ++ YL MIA+N     +G++ I+  L+     I + IEP++I++  I RT +GR
Sbjct: 241 TVTEINYLKMIAKN---KRIGLDNIAHLLNTTPLIIANNIEPFLIRENLIIRTIKGR 294


>gi|284931637|gb|ADC31575.1| Holliday junction ATP-dependent DNA helicase ruvB [Mycoplasma
           gallisepticum str. F]
          Length = 306

 Score =  203 bits (517), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 114/313 (36%), Positives = 183/313 (58%), Gaps = 14/313 (4%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           + L RP   +EF G+ E    L  FI A+ ++ +ALDHVLF GPPG+GKT+LAQ++A EL
Sbjct: 1   MKLARPNNFDEFIGKNELKQKLLTFINASISQNKALDHVLFYGPPGVGKTSLAQIIANEL 60

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138
               +      I K  DL    + L   DVLFIDEIH LS  + E+L+P MED+ +D+++
Sbjct: 61  KSKIKILQASQIQKPADLLNAFSLLSKNDVLFIDEIHSLSPTIMELLFPIMEDYVVDILI 120

Query: 139 GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKL 198
           G+  +++  ++ L  FTLI ATT  G + +PL++RFGI ++L++Y+ +++  I++     
Sbjct: 121 GKEFNSKFTRMKLPPFTLIGATTMYGRIIDPLEERFGILLQLDYYQDDEIFEIIRSINVK 180

Query: 199 TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL-RLAIDK 257
             + +T +   +IA  S+GTPR A R+ +RV DF      K   +EI   ++L +L I +
Sbjct: 181 EKIELTKDEMVQIAEHSKGTPRNALRIYKRVMDF------KLFDQEITIKSILEKLNIYQ 234

Query: 258 MGFDQLDLRYLTMIARNFGGGP---VGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
            G   LDL YL    ++F   P   +G++++S         IE  IEPY+++   I++T 
Sbjct: 235 FGLSNLDLEYL----KSFDDNPKLYLGLKSLSLISGIDCFTIESKIEPYLLKMNLIKKTS 290

Query: 315 RGRLLMPIAWQHL 327
           +GR +   A ++ 
Sbjct: 291 KGRQITQKAIKYF 303


>gi|319777049|ref|YP_004136700.1| holliday junction ATP-dependent DNA helicase ruvb [Mycoplasma
           fermentans M64]
 gi|238809833|dbj|BAH69623.1| hypothetical protein [Mycoplasma fermentans PG18]
 gi|318038124|gb|ADV34323.1| Holliday junction ATP-dependent DNA helicase RuvB [Mycoplasma
           fermentans M64]
          Length = 320

 Score =  203 bits (517), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 106/297 (35%), Positives = 172/297 (57%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           +LRP    EF GQ +    LK  IE ++ R E LDH+LF GPPG GKT+LA ++A EL  
Sbjct: 5   MLRPANFFEFVGQEKLIYTLKTMIEGSRYRKEPLDHILFYGPPGTGKTSLASILANELDT 64

Query: 81  NFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
                 G ++ K  D+  +  N+++ D++FIDEIH ++  VEEI+Y AMED+++D+++G 
Sbjct: 65  KIHYLQGALLEKKSDILTVFANVKENDIIFIDEIHSMNKNVEEIIYNAMEDYKIDIIIGP 124

Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
             +++ +++NL  FTLI ATT++ LLT PL+DRFG   RL+ Y  +++  I++    +  
Sbjct: 125 EGNSKVMRMNLKPFTLIGATTKINLLTQPLKDRFGFIARLSQYNEKEIAKILENSEMVLN 184

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGF 260
           +         IA  S+GTPR+A  LL+R+ DF+       IT++   +    L +  +G 
Sbjct: 185 IKSERGVIPLIAKYSKGTPRVANHLLKRILDFSIQNKEDEITKKTTYSTFKHLELYDLGL 244

Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317
            +  + YL ++   F      I++I+  L+  RD +   +EP ++    I + PRGR
Sbjct: 245 GREHIEYLKVLNETFENKFAAIDSIAGVLNIDRDILIYELEPLLLYLKLIAKGPRGR 301


>gi|42561076|ref|NP_975527.1| Holliday junction DNA helicase RuvB [Mycoplasma mycoides subsp.
           mycoides SC str. PG1]
 gi|42492573|emb|CAE77169.1| Holliday junction DNA helicase RuvB [Mycoplasma mycoides subsp.
           mycoides SC str. PG1]
 gi|301321164|gb|ADK69807.1| Holliday junction DNA helicase RuvB [Mycoplasma mycoides subsp.
           mycoides SC str. Gladysdale]
          Length = 307

 Score =  203 bits (516), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 103/297 (34%), Positives = 177/297 (59%), Gaps = 3/297 (1%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           + RP   EE+ GQ     NLKVFI++AK + + +DH+   GP G GKT+LA ++A++L  
Sbjct: 1   MFRPEKWEEYIGQTNILDNLKVFIKSAKKQNKVVDHIFIYGPSGYGKTSLAYLLAKQLKT 60

Query: 81  NFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           N R  +GP + KA D+ ++LT+++++DVLFIDEIH ++  V EI+YP +E+ +L++++G+
Sbjct: 61  NIRILNGPNLQKASDIISILTSIKEKDVLFIDEIHAVNKEVLEIIYPVLEENKLNIIIGK 120

Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
             +++ V I+L +FT+I ATT +  +  PL +RF I   +  Y +ED+  I++       
Sbjct: 121 DYNSKVVNIDLPKFTIICATTEINKIPLPLLNRFPINFTMQEYNLEDMSKIIELYCNKFQ 180

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGF 260
           + +  +    +A   R TPRIA  L++R++D     + K I        L +L I ++G 
Sbjct: 181 IKLDQDIYLYLASFCRKTPRIAINLIKRIKDHIICDNPKIIDVNYIKKVLDKLEIYELGL 240

Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317
              ++ YL MI +N     +G++ I+  L+     I + IEP++I++  I RT + R
Sbjct: 241 TITEINYLKMITKN---KRIGLDNIAHLLNTTPLIIANNIEPFLIRESLIIRTIKER 294


>gi|26553732|ref|NP_757666.1| Holliday junction DNA helicase B [Mycoplasma penetrans HF-2]
 gi|26453739|dbj|BAC44070.1| holliday junction DNA helicase [Mycoplasma penetrans HF-2]
          Length = 322

 Score =  202 bits (515), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 105/298 (35%), Positives = 179/298 (60%), Gaps = 9/298 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L++F G+    +NL  +I+++K R E LDH LF GP G+GKTTLA++++ EL  N
Sbjct: 6   IRPQYLKDFCGKNNIKNNLLAYIDSSKNRNECLDHCLFYGPAGVGKTTLAKIISNELSQN 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            +   GP I +  D+  L+ +L +  ++FIDE+H ++    E+LY AMEDF++++ +G+ 
Sbjct: 66  IKIVQGPEIQEKTDILNLIYSLNENSIIFIDEVHSINPKCFELLYSAMEDFEINIEIGKD 125

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            + +   +++ +FTLI ATT++G L  P ++RFGI I ++ Y  +++  I+    K   +
Sbjct: 126 FNKKLTTVSIPKFTLIGATTKLGNLPAPFEERFGIVINISEYTEKEIYKILDFSLKQCDI 185

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            V  +    I+ RS+G PRIA R+L R  D     H+ T +   A+  L  + + + G +
Sbjct: 186 KVDKKVLEIISHRSKGIPRIAKRILARYLD-----HSLT-SNNTAETILKNIGVYEKGLN 239

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLL 319
           ++DL YL  I  N     +G++T+S  L+     I + IEP++I+  FI +T  GR+L
Sbjct: 240 EIDLSYLLCIYEN---TKLGLKTLSQILNVDEKTIIEKIEPFLIKNNFISKTINGRIL 294


>gi|309799475|ref|ZP_07693706.1| holliday junction ATP-dependent DNA helicase RuvB [Streptococcus
           infantis SK1302]
 gi|308116889|gb|EFO54334.1| holliday junction ATP-dependent DNA helicase RuvB [Streptococcus
           infantis SK1302]
          Length = 183

 Score =  201 bits (511), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 98/153 (64%), Positives = 120/153 (78%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E+ GQ +    L++FIEAAK R EALDHVL  GPPGLGKTT+A V+A ELGVN
Sbjct: 20  LRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANELGVN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            + TSGPVI KAGDL A+L +LE  DVLFIDEIHRL + VEE+LY AMEDF +D+M+G G
Sbjct: 80  LKQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAG 139

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRF 174
            ++RSV ++L  FTLI ATTR G+L+NPL+ RF
Sbjct: 140 EASRSVHLDLPPFTLIGATTRAGMLSNPLRARF 172


>gi|71894188|ref|YP_278296.1| Holliday junction DNA helicase B [Mycoplasma synoviae 53]
          Length = 304

 Score =  199 bits (505), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 102/288 (35%), Positives = 165/288 (57%)

Query: 32  GQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA 91
           GQ    S LK  IE++K + + L+H+LF G PG+GKT+LA ++A E         G  + 
Sbjct: 2   GQKNLISTLKAMIESSKKQNKVLNHILFYGMPGMGKTSLAGIIANETKNKIHFIQGSNLE 61

Query: 92  KAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINL 151
           K  DL  +L+ + + D++FIDEIH ++  + E LY AMEDF  DL++G   +A+++++ +
Sbjct: 62  KKSDLINILSVINENDIVFIDEIHSINKNIIEFLYSAMEDFVFDLIIGTESNAKALRMKI 121

Query: 152 SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEI 211
             FTLI ATT++  +  P +DRFG   R   Y  ED+K I++   KL  + + +E    +
Sbjct: 122 KPFTLIGATTKINEMAQPFKDRFGYIARFVSYNAEDMKQIIRNSIKLLNINLGEEHFDFV 181

Query: 212 AMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMI 271
           A  SR TPRI   LL R+ DFA V +A  I ++I       L + + G  +  + YL ++
Sbjct: 182 ASYSRNTPRIVNHLLERINDFAIVKNAGIIDKKIIKKTFKSLDLYEYGLTKDHVEYLQLL 241

Query: 272 ARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLL 319
              F   PV ++T+S  L  P++ + + IEP ++    I +T +GR++
Sbjct: 242 RDGFDSKPVSLDTLSGVLIHPKEVLVNEIEPILLYLKLITKTSKGRMI 289


>gi|293363752|ref|ZP_06610494.1| Holliday junction DNA helicase RuvB [Mycoplasma alligatoris A21JP2]
 gi|292552673|gb|EFF41441.1| Holliday junction DNA helicase RuvB [Mycoplasma alligatoris A21JP2]
          Length = 314

 Score =  198 bits (504), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 102/296 (34%), Positives = 171/296 (57%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP T  EF GQ +    +K  I +A+ + ++LDH+L  GPPG GKT+LA ++A      
Sbjct: 5   LRPSTFNEFIGQAKLKETIKAMIVSARVQNKSLDHILLYGPPGTGKTSLAGIIASAQKSF 64

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
                   I K  DL ++ + L   D+LFIDE+H L+ ++EE+LY AMEDF  D+++G  
Sbjct: 65  IHYVQASNIEKKSDLISIFSTLNQGDILFIDEVHSLNKMIEELLYNAMEDFVFDVIIGTE 124

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            +A+++++ +  FTLIAATT++  ++ PL+DRFG+  +++ YE  +L  I++  A +  L
Sbjct: 125 DNAKTMRMKIKPFTLIAATTKINNISQPLKDRFGLVGKMHNYEDSELVKILKNSASILKL 184

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +    A  I   SR TPRIA  LL+RV DF    + + I  +I       L + + G  
Sbjct: 185 DLGQSEAEYIVSFSRQTPRIANNLLKRVNDFKIAKNKEIIDLKIIQKTFDNLELYEFGLG 244

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317
           +  + Y+ ++  +F      ++TIS+ L+  ++ + + IEP ++    I+++ RGR
Sbjct: 245 KDHVEYIQLLKDSFDEKWASLDTISSLLNTNKENLLNDIEPILLFYRLIKKSSRGR 300


>gi|193216718|ref|YP_001999960.1| Holliday junction DNA helicase RuvB [Mycoplasma arthritidis
           158L3-1]
 gi|193002041|gb|ACF07256.1| Holliday junction DNA helicase RuvB [Mycoplasma arthritidis
           158L3-1]
          Length = 317

 Score =  196 bits (499), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 104/296 (35%), Positives = 170/296 (57%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
            R ++  +F GQ +    LKV I +A      +DH+LF GPPGLGKT+LA+++A E   N
Sbjct: 6   FRVKSFSDFIGQEKITKTLKVMIASASKLKRPIDHLLFYGPPGLGKTSLAKIIATETKRN 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
                GP++ K  D+  LL ++++ D++FIDE+H ++  +EE+LY A+ED  +D+ +G  
Sbjct: 66  IVYAQGPLLEKKSDILTLLNSIKENDIIFIDEVHGINHNLEELLYSALEDGVVDIPLGVE 125

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
              R +++ L  F+LIAATT+  LL+ PL+DRFG   +L  Y  E++  I+   A    +
Sbjct: 126 GDRRIMRMKLKSFSLIAATTKFNLLSQPLKDRFGFIGKLTPYTDEEIIKIITNSAARNNI 185

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + ++A  +IA  SR TPR+A  LL+RV DFA       IT ++   A   + I + G  
Sbjct: 186 PIDEKAIKKIAEHSRQTPRVANNLLKRVYDFAVYEKKDLITEKLVKKAFKFIGIFQYGLV 245

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317
              + YL ++ + F      ++ IS  +S+ +  I + IEP ++    I+++ RGR
Sbjct: 246 YSQIEYLRVLHQVFNDSFGSLDAISGIISDEKSTIINEIEPLLLVYKLIEKSSRGR 301


>gi|47459106|ref|YP_015968.1| Holliday junction DNA helicase B [Mycoplasma mobile 163K]
 gi|47458435|gb|AAT27757.1| holliday junction DNA helicase RuvB [Mycoplasma mobile 163K]
          Length = 323

 Score =  193 bits (490), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 100/295 (33%), Positives = 164/295 (55%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP +  EF GQ      LKV I+++  R E LDH++F   PG GKT+LA ++++E+  N 
Sbjct: 13  RPNSFNEFIGQKNLKHTLKVLIKSSILRKENLDHLIFQANPGYGKTSLAYIISKEMNSNL 72

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGP 142
           +   G    K  DL +L  ++ + D++F+DEIH ++  +EEILY  M+DF +D+ +G   
Sbjct: 73  KIVQGNQFEKKSDLLSLFVSVNENDIIFVDEIHAINKSIEEILYSVMDDFVIDIQIGPEG 132

Query: 143 SARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLA 202
             + V++NL  FTLI ATT++  L+ PL DRFG   + + Y   ++  I++  A+   + 
Sbjct: 133 EKKIVRMNLPHFTLIGATTQIEKLSKPLIDRFGFVGKFSSYNENEINLILKNLARKLKIK 192

Query: 203 VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQ 262
           + ++A   I+M S   PRIA  LL+R  DFA     K+I       A   L I + G + 
Sbjct: 193 IDEQALKLISMNSSYIPRIAINLLKRAWDFAIFDEKKSIDITTIKKAFNYLGIFENGLNI 252

Query: 263 LDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317
           L ++YL ++ + F      ++ IS+ L   ++ +   IE  ++    I++T RGR
Sbjct: 253 LHIKYLKLLYQAFKNKSASLDAISSILGLSKNNVVFHIESNLLNLELIEKTSRGR 307


>gi|301633613|gb|ADK87167.1| Holliday junction DNA helicase RuvB [Mycoplasma pneumoniae FH]
          Length = 307

 Score =  191 bits (485), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 98/297 (32%), Positives = 182/297 (61%), Gaps = 9/297 (3%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFR 83
           P    EF G+ E  + +++ I+A++     LDH+L  GPPG+GKTTLA+++A E+    +
Sbjct: 8   PNNFAEFVGKQEIINQIQLSIKASRINKAQLDHILLYGPPGVGKTTLARLIASEMNTKLQ 67

Query: 84  STSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPS 143
              G  + +  D    ++ ++  DVLF+DEIH ++  V E+++P M+DF++ +++G+  +
Sbjct: 68  IIQGGHLQRPSDFLNAVSLIKKGDVLFVDEIHAVAPSVMELMFPVMDDFRVQVLIGKDFN 127

Query: 144 ARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAV 203
           ++ V++ ++ FTLI ATT+ G + NPL+DRFG+ + +++Y  ++++ IV    +   L +
Sbjct: 128 SKMVEMKVNPFTLIGATTQFGKIINPLEDRFGMILNIDYYSNQEIERIVSIYGEQMELEL 187

Query: 204 TDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR-LAIDKMGFDQ 262
             E   +I   S+ TPRIA R+++R+ +       K + ++I  AAL + L I K G   
Sbjct: 188 KPEEITQITQHSKQTPRIAIRIVKRLFE------QKIVNKKIDLAALFKSLMIYKNGLQS 241

Query: 263 LDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLL 319
           +D++YL   A N    P GI++I + L   +  +E+ IEP+++++  IQ+T +GR++
Sbjct: 242 IDVQYLK--ALNGQYEPQGIKSICSMLGIDKSTVENKIEPFLLRENMIQKTKKGRII 296


>gi|67810107|gb|AAY81985.1| Holliday junction DNA helicase [Wolbachia pipientis]
          Length = 147

 Score =  190 bits (483), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 91/147 (61%), Positives = 122/147 (82%)

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLAQ+V++EL V+FR+TSGP+++KAGDLAA+LT L  +DVLFIDEIHRL+  +EE
Sbjct: 1   GLGKTTLAQIVSKELRVSFRATSGPLLSKAGDLAAVLTTLNAKDVLFIDEIHRLNRSIEE 60

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LY AMEDF LD++VGEGPS R+++I+L  FTLI ATTR+GLL+ PL+DRFGIP+ L FY
Sbjct: 61  VLYTAMEDFCLDILVGEGPSTRTLRIDLPPFTLIGATTRLGLLSAPLRDRFGIPLHLEFY 120

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACE 210
             E+L  I++RGA++    + ++AA E
Sbjct: 121 SFEELVNIIKRGARVLSAEIEEDAARE 147


>gi|13508275|ref|NP_110225.1| Holliday junction DNA helicase B [Mycoplasma pneumoniae M129]
 gi|2498874|sp|P75242|RUVB_MYCPN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|1673978|gb|AAB95954.1| Holliday junction DNA helicase RuvB [Mycoplasma pneumoniae M129]
          Length = 307

 Score =  190 bits (482), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 97/297 (32%), Positives = 181/297 (60%), Gaps = 9/297 (3%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFR 83
           P    EF G+ E  + +++ I+A++     LDH+L  GPPG+GKTTLA+++A E+    +
Sbjct: 8   PNNFAEFVGKQEIINQIQLSIKASRINKAQLDHILLYGPPGVGKTTLARLIASEMNTKLQ 67

Query: 84  STSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPS 143
              G  + +  D    ++ ++  DVLF+DEIH ++  V E+++P M+DF++ +++G+  +
Sbjct: 68  IIQGGHLQRPSDFLNAVSLIKKGDVLFVDEIHAVAPSVMELMFPVMDDFRVQVLIGKDFN 127

Query: 144 ARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAV 203
           ++ V++ ++ FT I ATT+ G + NPL+DRFG+ + +++Y  ++++ IV    +   L +
Sbjct: 128 SKMVEMKVNPFTWIGATTQFGKIINPLEDRFGMILNIDYYSNQEIERIVSIYGEQMELEL 187

Query: 204 TDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR-LAIDKMGFDQ 262
             E   +I   S+ TPRIA R+++R+ +       K + ++I  AAL + L I K G   
Sbjct: 188 KPEEITQITQHSKQTPRIAIRIVKRLFE------QKIVNKKIDLAALFKSLMIYKNGLQS 241

Query: 263 LDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLL 319
           +D++YL   A N    P GI++I + L   +  +E+ IEP+++++  IQ+T +GR++
Sbjct: 242 IDVQYLK--ALNGQYEPQGIKSICSMLGIDKSTVENKIEPFLLRENMIQKTKKGRII 296


>gi|12045219|ref|NP_073030.1| Holliday junction DNA helicase RuvB [Mycoplasma genitalium G37]
 gi|255660280|ref|ZP_05405689.1| Holliday junction DNA helicase RuvB [Mycoplasma genitalium G37]
 gi|2498873|sp|Q49425|RUVB_MYCGE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|3844943|gb|AAC71584.1| Holliday junction DNA helicase RuvB [Mycoplasma genitalium G37]
 gi|166078959|gb|ABY79577.1| Holliday junction DNA helicase RuvB [synthetic Mycoplasma
           genitalium JCVI-1.0]
          Length = 307

 Score =  186 bits (473), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 106/305 (34%), Positives = 184/305 (60%), Gaps = 9/305 (2%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFR 83
           P T +EF G+ E  S +++ I+A+K     LDH+L  GPPG+GKTTLA+++A EL    +
Sbjct: 8   PNTFDEFVGKQEIISQIQLSIKASKLNKTQLDHILLYGPPGVGKTTLARLIANELKTKLQ 67

Query: 84  STSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPS 143
              G  + K  D    ++ ++  DVLFIDEIH ++  V E++YP M+ F++ +++G+  +
Sbjct: 68  IIQGGHLQKPSDFLNAISLIKKGDVLFIDEIHAVAPNVMELMYPVMDVFKIQVLIGKDFN 127

Query: 144 ARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAV 203
           ++ V++ ++ FTLI ATT++G + NPL+DRFG+ + +N+Y   +++ +V    K   L +
Sbjct: 128 SKIVEMKVNPFTLIGATTQLGKIINPLEDRFGVILNINYYSNAEIEKMVSIYGKQMKLEL 187

Query: 204 TDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR-LAIDKMGFDQ 262
                  I   S+ TPRIA R++RR+ +       K + ++I    L + L I K G   
Sbjct: 188 NSNEISAITEHSKQTPRIAIRIVRRIFE------QKIVNKKIDLEGLFKNLMIYKNGLQS 241

Query: 263 LDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPI 322
           +D++YL ++ R     P GI++IS+ L   R  IE+ IEP+++++  IQ+T +GR++   
Sbjct: 242 IDVQYLEVLNRQ--NEPQGIKSISSMLGIDRHTIENKIEPFLLRENMIQKTKKGRIITNS 299

Query: 323 AWQHL 327
             ++L
Sbjct: 300 GREYL 304


>gi|167973719|ref|ZP_02555996.1| holliday junction DNA helicase RuvB [Ureaplasma urealyticum serovar
           11 str. ATCC 33695]
 gi|167975816|ref|ZP_02558093.1| holliday junction DNA helicase RuvB [Ureaplasma urealyticum serovar
           12 str. ATCC 33696]
 gi|167987906|ref|ZP_02569577.1| holliday junction DNA helicase RuvB [Ureaplasma urealyticum serovar
           7 str. ATCC 27819]
 gi|168362931|ref|ZP_02696105.1| holliday junction DNA helicase RuvB [Ureaplasma urealyticum serovar
           13 str. ATCC 33698]
 gi|195867808|ref|ZP_03079808.1| holliday junction DNA helicase RuvB [Ureaplasma urealyticum serovar
           9 str. ATCC 33175]
 gi|198273848|ref|ZP_03206382.1| holliday junction DNA helicase RuvB [Ureaplasma urealyticum serovar
           4 str. ATCC 27816]
 gi|225550951|ref|ZP_03771900.1| holliday junction DNA helicase RuvB [Ureaplasma urealyticum serovar
           2 str. ATCC 27814]
 gi|225551197|ref|ZP_03772143.1| holliday junction DNA helicase RuvB [Ureaplasma urealyticum serovar
           8 str. ATCC 27618]
 gi|171903160|gb|EDT49449.1| holliday junction DNA helicase RuvB [Ureaplasma urealyticum serovar
           13 str. ATCC 33698]
 gi|188019069|gb|EDU57109.1| holliday junction DNA helicase RuvB [Ureaplasma urealyticum serovar
           7 str. ATCC 27819]
 gi|188998029|gb|EDU67126.1| holliday junction DNA helicase RuvB [Ureaplasma urealyticum serovar
           11 str. ATCC 33695]
 gi|195660168|gb|EDX53548.1| holliday junction DNA helicase RuvB [Ureaplasma urealyticum serovar
           12 str. ATCC 33696]
 gi|195660505|gb|EDX53762.1| holliday junction DNA helicase RuvB [Ureaplasma urealyticum serovar
           9 str. ATCC 33175]
 gi|198249603|gb|EDY74385.1| holliday junction DNA helicase RuvB [Ureaplasma urealyticum serovar
           4 str. ATCC 27816]
 gi|225379012|gb|EEH01377.1| holliday junction DNA helicase RuvB [Ureaplasma urealyticum serovar
           8 str. ATCC 27618]
 gi|225380105|gb|EEH02467.1| holliday junction DNA helicase RuvB [Ureaplasma urealyticum serovar
           2 str. ATCC 27814]
          Length = 312

 Score =  184 bits (468), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 103/299 (34%), Positives = 170/299 (56%), Gaps = 13/299 (4%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
            RP+ L++F G+ +  SNLK+++ A K    + DH L  G  G GKTTLA ++A E+GV+
Sbjct: 7   FRPQYLKDFIGKDQLKSNLKIYLNATKRLKSSFDHTLLHGLAGTGKTTLATIIANEMGVD 66

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
              T G ++ K  D+  LL+ +++ DV+F+DEIH   +   E LY  +EDF +D+ +G+ 
Sbjct: 67  CHMTQGNLLNKPVDIINLLSLIKENDVIFVDEIHACGLAAFETLYSVLEDFCIDISIGKD 126

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT-G 200
            +A+  ++ +  FTLI ATT +G +  PL++RFG    L+ YE  ++  I+ +  ++   
Sbjct: 127 FNAKMTRLKVPHFTLIGATTMLGKIPKPLEERFGHVFYLSEYETSEIAAIILKNNQIHFQ 186

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA--EVAHAKTITREIADAALLRLAIDKM 258
           + + D+    IA  ++G PR+A RLL+RV DF      + K I  +I         I   
Sbjct: 187 INLNDQEIDLIANSAKGIPRLANRLLKRVVDFKINGFDNIKNIFEKI--------QIYDF 238

Query: 259 GFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317
           G ++ D+ YL ++ +      +G+++I+  L   +  IE  IEPY+IQ  FI +  RGR
Sbjct: 239 GLEEQDINYLNVLYQQ--ENEIGLKSIAQILRLDQYTIETKIEPYLIQHHFINKNLRGR 295


>gi|209554525|ref|YP_002284875.1| Holliday junction DNA helicase RuvB [Ureaplasma urealyticum serovar
           10 str. ATCC 33699]
 gi|226698787|sp|B5ZBT5|RUVB_UREU1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|209542026|gb|ACI60255.1| holliday junction DNA helicase RuvB [Ureaplasma urealyticum serovar
           10 str. ATCC 33699]
          Length = 312

 Score =  184 bits (468), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 103/299 (34%), Positives = 170/299 (56%), Gaps = 13/299 (4%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
            RP+ L++F G+ +  SNLK+++ A K    + DH L  G  G GKTTLA ++A E+GV+
Sbjct: 7   FRPQYLKDFIGKDQLKSNLKIYLNATKRLKSSFDHTLLHGLAGTGKTTLATIIANEMGVD 66

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
              T G ++ K  D+  LL+ +++ DV+F+DEIH   +   E LY  +EDF +D+ +G+ 
Sbjct: 67  CHMTQGNLLNKPVDIINLLSLIKENDVIFVDEIHACGLAAFETLYSVLEDFCIDISIGKD 126

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT-G 200
            +A+  ++ +  FTLI ATT +G +  PL++RFG    L+ YE  ++  I+ +  ++   
Sbjct: 127 FNAKMTRLKVPHFTLIGATTMLGKIPEPLEERFGHVFYLSEYETSEIAAIILKNNQIHFQ 186

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA--EVAHAKTITREIADAALLRLAIDKM 258
           + + D+    IA  ++G PR+A RLL+RV DF      + K I  +I         I   
Sbjct: 187 INLNDQEIDLIANSAKGIPRLANRLLKRVVDFKINGFDNIKNIFEKI--------QIYDF 238

Query: 259 GFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317
           G ++ D+ YL ++ +      +G+++I+  L   +  IE  IEPY+IQ  FI +  RGR
Sbjct: 239 GLEEQDINYLNVLYQQ--ENEIGLKSIAQILRLDQYTIETKIEPYLIQHHFINKNLRGR 295


>gi|167972862|ref|ZP_02555139.1| holliday junction DNA helicase RuvB [Ureaplasma urealyticum serovar
           5 str. ATCC 27817]
 gi|184209206|gb|EDU06249.1| holliday junction DNA helicase RuvB [Ureaplasma urealyticum serovar
           5 str. ATCC 27817]
          Length = 312

 Score =  184 bits (468), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 103/299 (34%), Positives = 170/299 (56%), Gaps = 13/299 (4%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
            RP+ L++F G+ +  SNLK+++ A K    + DH L  G  G GKTTLA ++A E+GV+
Sbjct: 7   FRPQYLKDFIGKDQLKSNLKIYLNATKRLKSSFDHTLLHGLAGTGKTTLATIIANEMGVD 66

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
              T G ++ K  D+  LL+ +++ DV+F+DEIH   +   E LY  +EDF +D+ +G+ 
Sbjct: 67  CNMTQGNLLNKPVDIINLLSLIKENDVIFVDEIHACGLAAFETLYSVLEDFCIDISIGKD 126

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT-G 200
            +A+  ++ +  FTLI ATT +G +  PL++RFG    L+ YE  ++  I+ +  ++   
Sbjct: 127 FNAKMTRLKVPHFTLIGATTMLGKIPKPLEERFGHVFYLSEYETSEIAAIILKNNQIHFQ 186

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA--EVAHAKTITREIADAALLRLAIDKM 258
           + + D+    IA  ++G PR+A RLL+RV DF      + K I  +I         I   
Sbjct: 187 INLNDQEIDLIANSAKGIPRLANRLLKRVVDFKINGFDNIKNIFEKI--------QIYDF 238

Query: 259 GFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317
           G ++ D+ YL ++ +      +G+++I+  L   +  IE  IEPY+IQ  FI +  RGR
Sbjct: 239 GLEEQDINYLNVLYQQ--ENEIGLKSIAQILRLDQYTIETKIEPYLIQHHFINKNLRGR 295


>gi|237755644|ref|ZP_04584257.1| holliday junction ATP-dependent DNA helicase RuvB
           [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237692208|gb|EEP61203.1| holliday junction ATP-dependent DNA helicase RuvB
           [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 196

 Score =  184 bits (468), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 88/185 (47%), Positives = 131/185 (70%)

Query: 143 SARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLA 202
           SA+++++++++FTLI ATTR+G+L+ PL  RFGI + L+FY+ + LK I+ R AK+  + 
Sbjct: 6   SAKAIRLDINKFTLIGATTRIGMLSTPLISRFGIILNLDFYDEKSLKEIILRSAKILNIN 65

Query: 203 VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQ 262
           +T+E A EIA  S+GTPRIA +LL+RV D+A +     I RE A  AL  L+I K G D 
Sbjct: 66  ITEEGALEIAKHSKGTPRIANKLLKRVYDYAVIHKKDVIDRETAFDALRFLSIGKDGIDG 125

Query: 263 LDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPI 322
           L L+YL  +   F GGPVG+ TIS  +SE +  IE++IEPY+++ GFI+RT +GR+ +P 
Sbjct: 126 LSLKYLKSLVYQFNGGPVGLNTISFAISEDKRTIEEVIEPYLLKLGFIKRTAKGRVALPT 185

Query: 323 AWQHL 327
           A ++L
Sbjct: 186 AVEYL 190


>gi|13358011|ref|NP_078285.1| Holliday junction DNA helicase B [Ureaplasma parvum serovar 3 str.
           ATCC 700970]
 gi|168281626|ref|ZP_02689293.1| holliday junction DNA helicase RuvB [Ureaplasma parvum serovar 14
           str. ATCC 33697]
 gi|170762291|ref|YP_001752533.1| Holliday junction DNA helicase RuvB [Ureaplasma parvum serovar 3
           str. ATCC 27815]
 gi|20140319|sp|Q9PQ42|RUVB_UREPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|189046056|sp|B1AJ89|RUVB_UREP2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|11277827|pir||F82889 holliday junction DNA helicase UU448 [imported] - Ureaplasma
           urealyticum
 gi|6899440|gb|AAF30860.1|AE002141_6 holliday junction DNA helicase [Ureaplasma parvum serovar 3 str.
           ATCC 700970]
 gi|168827868|gb|ACA33130.1| holliday junction DNA helicase RuvB [Ureaplasma parvum serovar 3
           str. ATCC 27815]
 gi|182675948|gb|EDT87853.1| holliday junction DNA helicase RuvB [Ureaplasma parvum serovar 14
           str. ATCC 33697]
          Length = 312

 Score =  184 bits (467), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 105/299 (35%), Positives = 169/299 (56%), Gaps = 13/299 (4%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
            RP+ L++F G+ +  +NLKV++ A+K    + DH L  G  G GKTTLA ++A E+ VN
Sbjct: 7   FRPQYLKDFIGKEQLKNNLKVYLTASKRLENSFDHTLLHGLSGTGKTTLALIIANEMNVN 66

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
              T G ++ K  D+  LL+ +++ DV+FIDEIH   +   E LY  +EDF +D+ +G+ 
Sbjct: 67  CHITQGNLLNKPIDIINLLSLIKENDVVFIDEIHACGLGAFETLYSVLEDFCIDINIGKD 126

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT-G 200
            +++  ++ +  FTLI ATT  G +   L++RFG    LN YE  ++  I+ +  ++   
Sbjct: 127 FNSKMTRLKIPHFTLIGATTIFGKIPKSLEERFGHIFHLNEYEPSEISAIILKNNQMHFQ 186

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA--EVAHAKTITREIADAALLRLAIDKM 258
           + + +E    IA  ++G PR+A RLL+RV DF        K I ++I         I + 
Sbjct: 187 IDLNEEEIDLIANNAKGIPRLANRLLKRVVDFKINGFNDIKNIFKKI--------QIYEF 238

Query: 259 GFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317
           G D+ D+ YL ++ R      +G+++I+  L   +  IE  IEPY+IQ  FI +  RGR
Sbjct: 239 GLDEQDINYLNVLYRQ--DNEIGLKSIAQILRLDQYTIETKIEPYLIQHHFINKNLRGR 295


>gi|226324736|ref|ZP_03800254.1| hypothetical protein COPCOM_02522 [Coprococcus comes ATCC 27758]
 gi|225207184|gb|EEG89538.1| hypothetical protein COPCOM_02522 [Coprococcus comes ATCC 27758]
          Length = 155

 Score =  174 bits (440), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 88/150 (58%), Positives = 115/150 (76%), Gaps = 3/150 (2%)

Query: 2   MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M R  + + N+ +ED  I S LRP+ LE++ GQ +A   LK++IEAAK+R EALDHVLF 
Sbjct: 1   MGRRIITTENL-EEDVKIESHLRPQLLEDYIGQAKAKETLKIYIEAAKSRGEALDHVLFY 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A E+GVN + TSGP I K G++AA+L NL++ DVLF+DEIHRL+  
Sbjct: 60  GPPGLGKTTLAGIIANEMGVNIKITSGPAIEKPGEMAAILNNLQEGDVLFVDEIHRLNRQ 119

Query: 121 VEEILYPAMEDFQLDLMVGEG-PSARSVKI 149
           VEE+LYPAMEDF +D+M+G+G    RSV I
Sbjct: 120 VEEVLYPAMEDFAIDIMIGKGLRQGRSVWI 149


>gi|5514774|emb|CAB50776.1| RuvB protein [Pseudomonas putida]
          Length = 171

 Score =  173 bits (439), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 85/156 (54%), Positives = 110/156 (70%)

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           RL FY  +DL TIV R A + GLA+ D+ A EIA R+RGTPRIA RLLRRVRD+AEV   
Sbjct: 3   RLEFYNDKDLSTIVSRSANILGLAIEDQGAYEIARRARGTPRIANRLLRRVRDYAEVRGK 62

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             IT+ +AD AL  L +D+ GFD  D R L  +   F GGPVG++ ++A +SE R  IED
Sbjct: 63  GQITKAVADMALNLLDVDERGFDHSDRRLLLTMIEKFDGGPVGVDNLAAAISEERHTIED 122

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           ++EPY+IQQG+I RTPRGR++   A+ H G++IP R
Sbjct: 123 VLEPYLIQQGYIMRTPRGRVVTRHAYLHFGLNIPGR 158


>gi|270684400|ref|ZP_06222796.1| Holliday junction DNA helicase ruvB [Haemophilus influenzae HK1212]
 gi|270316265|gb|EFA28211.1| Holliday junction DNA helicase ruvB [Haemophilus influenzae HK1212]
          Length = 111

 Score =  172 bits (435), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 79/109 (72%), Positives = 96/109 (88%)

Query: 40  LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAAL 99
           + +FI+AAK R +ALDH+L  GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+
Sbjct: 1   MDIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAAM 60

Query: 100 LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVK 148
           LTNLE  DVLFIDEIHRLS  +EE+LYPAMED+QLD+M+GEGP+ARS+K
Sbjct: 61  LTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIK 109


>gi|226324737|ref|ZP_03800255.1| hypothetical protein COPCOM_02523 [Coprococcus comes ATCC 27758]
 gi|225207185|gb|EEG89539.1| hypothetical protein COPCOM_02523 [Coprococcus comes ATCC 27758]
          Length = 170

 Score =  169 bits (429), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 79/166 (47%), Positives = 117/166 (70%)

Query: 165 LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGR 224
           +LT PL+DRFG+  RL FY  ++L+TI+ R A +  + + ++ A E+A RSRGTPR+A R
Sbjct: 1   MLTAPLRDRFGVVNRLEFYTEKELQTIIIRSAGVLDVEIDEKGALEMARRSRGTPRLANR 60

Query: 225 LLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIET 284
           LL+RVRDFA+V +   IT E+A  AL  L +D++G D +D   LT +   F GGPVG++T
Sbjct: 61  LLKRVRDFAQVKYEGVITEEVARQALDLLDVDRLGLDHVDRNLLTTMIEKFQGGPVGLDT 120

Query: 285 ISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           ++A + E    +ED+ EPY+++ GF+QRTPRGR++  +A+ HLG D
Sbjct: 121 LAAAIGEDAGTVEDVYEPYLLKNGFLQRTPRGRVVTDLAYTHLGFD 166


>gi|50365238|ref|YP_053663.1| Holliday junction DNA helicase B [Mesoplasma florum L1]
 gi|50363794|gb|AAT75779.1| holliday junction DNA helicase [Mesoplasma florum L1]
          Length = 315

 Score =  169 bits (428), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 91/298 (30%), Positives = 164/298 (55%), Gaps = 3/298 (1%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
            RP    E+ GQ +   NLK+ IE++  + + LD ++F GP G+GKT+LA ++++ L   
Sbjct: 5   FRPSKWSEYIGQEKVIKNLKICIESSIKQNKVLDPIIFSGPSGMGKTSLAYLLSKILKTK 64

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
               +GP + +  DL ++LT++++  +LFIDE+H +S  + E+LYP +E+ +L +++G+ 
Sbjct: 65  IHIVNGPSLQRPSDLISVLTSIKENQILFIDEVHSVSKDIMEVLYPVLEENKLSIIIGKE 124

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            +++ V I L  FT+I ATT +  L  P  +RF I   L  Y  +DL  I+         
Sbjct: 125 YNSKIVNIKLPNFTIITATTEINKLPFPFLNRFPIQFELEGYNHDDLTKIIINTFNKLQY 184

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  E A  IA  SR  PR+A  L++R+ DF      K ++ +       ++ + + G +
Sbjct: 185 KIEIEQAKIIAKFSRLVPRVAINLVKRIYDFLITEKIKDLSEKNLIWVFKQMGLYEYGLN 244

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLL 319
           + DL YL  +  N     + +++++  ++ P   I + +EP  +++  I +T RGR L
Sbjct: 245 EKDLDYLFTLLEN---NTLSLDSLAQIINVPNQTILNNMEPIFLKERLIIKTGRGRQL 299


>gi|167041777|gb|ABZ06519.1| putative ATPase family associated with various cellular activities
           (AAA) [uncultured marine microorganism HF4000_093M11]
          Length = 125

 Score =  164 bits (414), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 79/122 (64%), Positives = 99/122 (81%)

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
           V  R+TSGPVI + GDLAA+LTNLE   + FIDEIHRL+ +VEE+LY AMEDF LD+++G
Sbjct: 3   VPLRATSGPVIERQGDLAAILTNLEPGTIFFIDEIHRLNRVVEEVLYGAMEDFTLDIIIG 62

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199
           EGP AR+VKI+L  FTL+ ATTR GLLT+PL++RFGI  RLNFY+ E+LKTI+ R A L 
Sbjct: 63  EGPGARTVKIDLPHFTLVGATTRAGLLTSPLRERFGIQFRLNFYDPEELKTIILRAASLL 122

Query: 200 GL 201
           G+
Sbjct: 123 GM 124


>gi|62184297|gb|AAX76510.1| RuvB [Allochromatium vinosum DSM 180]
          Length = 164

 Score =  155 bits (393), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 75/143 (52%), Positives = 100/143 (69%)

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           DL  IVQR A + G+    + A EIA R+RGTPRIA RLLRRVRD+A+V     I+ EIA
Sbjct: 1   DLTHIVQRSAGILGIEAEPDGAAEIARRARGTPRIANRLLRRVRDYAQVRGDGRISAEIA 60

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           D AL  L +D +GFD +D R L+ +   F GGPVG+E+++A + E R  IED++EP++IQ
Sbjct: 61  DRALSMLKVDALGFDHMDRRLLSAVIEKFDGGPVGVESLAAAIGEERGTIEDVLEPFLIQ 120

Query: 307 QGFIQRTPRGRLLMPIAWQHLGI 329
           QGF+ RTPRGR+    A+QH G+
Sbjct: 121 QGFLMRTPRGRMATQSAYQHFGL 143


>gi|145652290|gb|ABP88206.1| hypothetical protein [Borrelia lonestari]
          Length = 157

 Score =  155 bits (393), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 74/150 (49%), Positives = 103/150 (68%), Gaps = 1/150 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           + +R   LS N     D + + LRP++L EF GQ     NL +FI A+K R E+LDHV  
Sbjct: 8   LQERTNFLSSNKDFLYDTNENELRPKSLVEFVGQSHIKENLNIFIRASKDRNESLDHVFL 67

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+    + TS P + K  D+  +LT L+D+ +LFIDE+HRL  
Sbjct: 68  SGPPGLGKTTLASIVAFEMNATIKVTSAPALDKPKDIVGILTTLDDKSILFIDELHRLKP 127

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKI 149
           +VEE+LY AMED+++D ++G+GPSAR+V+I
Sbjct: 128 VVEEMLYIAMEDYKIDWIIGQGPSARTVRI 157


>gi|218680790|ref|ZP_03528687.1| Holliday junction DNA helicase RuvB [Rhizobium etli CIAT 894]
          Length = 101

 Score =  154 bits (390), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 74/101 (73%), Positives = 92/101 (91%)

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           MEDFQLDL++GEGP+ARSVKI+LS+FTL+AATTR+GLLT PL+DRFGIP+RL+FY +E+L
Sbjct: 1   MEDFQLDLIIGEGPAARSVKIDLSKFTLVAATTRLGLLTTPLRDRFGIPVRLSFYTVEEL 60

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           + IV+RGA+L  L +T+E A EIA R+RGTPRIAGRLLRRV
Sbjct: 61  ELIVRRGARLMNLPMTEEGAREIARRARGTPRIAGRLLRRV 101


>gi|323246750|gb|EGA30722.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
          Length = 137

 Score =  151 bits (382), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 73/134 (54%), Positives = 94/134 (70%)

Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259
           GL ++D+ A E+A R+RGTPRIA RLLRRVRDFAEV H   I+ EIA  AL  L +D  G
Sbjct: 2   GLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGAISAEIAAQALDMLNVDAEG 61

Query: 260 FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLL 319
           FD +D + L  +   F GGPVG++ ++A + E R+ IED++EPY+IQQGF+QRTPRGR+ 
Sbjct: 62  FDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMA 121

Query: 320 MPIAWQHLGIDIPH 333
              AW H GI  P 
Sbjct: 122 TVRAWNHFGITPPE 135


>gi|213027805|ref|ZP_03342252.1| Holliday junction DNA helicase B [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 150

 Score =  150 bits (379), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 72/134 (53%), Positives = 94/134 (70%)

Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259
           G+ ++D+ A E+A R+RGTPRIA RLLRRVRDFAEV H   I+ EIA  AL  L +D  G
Sbjct: 15  GVEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGAISAEIAAQALDMLNVDAEG 74

Query: 260 FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLL 319
           FD +D + L  +   F GGPVG++ ++A + E R+ IED++EPY+IQQGF+QRTPRGR+ 
Sbjct: 75  FDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMA 134

Query: 320 MPIAWQHLGIDIPH 333
              AW H GI  P 
Sbjct: 135 TVRAWNHFGITPPE 148


>gi|213581978|ref|ZP_03363804.1| Holliday junction DNA helicase B [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 133

 Score =  148 bits (374), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 71/131 (54%), Positives = 92/131 (70%)

Query: 203 VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQ 262
           ++D+ A E+A R+RGTPRIA RLLRRVRDFAEV H   I+ EIA  AL  L +D  GFD 
Sbjct: 1   MSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGAISAEIAAQALDMLNVDAEGFDY 60

Query: 263 LDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPI 322
           +D + L  +   F GGPVG++ ++A + E R+ IED++EPY+IQQGF+QRTPRGR+    
Sbjct: 61  MDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMATVR 120

Query: 323 AWQHLGIDIPH 333
           AW H GI  P 
Sbjct: 121 AWNHFGITPPE 131


>gi|168698683|ref|ZP_02730960.1| Holliday junction DNA helicase RuvB [Gemmata obscuriglobus UQM
           2246]
          Length = 318

 Score =  148 bits (374), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 99/301 (32%), Positives = 152/301 (50%), Gaps = 9/301 (2%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +I  + P +L    GQ      ++V ++AA   A+  DH L  GPPG GKT  A+V+A+E
Sbjct: 6   EIGDVAPTSLAHLIGQRSVVEQVRVALDAAHQDAKKFDHALLCGPPGCGKTQTAKVIAQE 65

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           +   F+   G  I    DL ALL   +DRDV+ +DE H L    +  LY A++  ++ L 
Sbjct: 66  MAGEFQEVLGQAIQSPADLNALLLGAKDRDVILLDEAHELDREYQTALYLAIDQRRVLLQ 125

Query: 138 V-GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA 196
             G  P A    I L+ FTL+ ATT    L  PL+DR  + +R  FY  E+L  ++++ A
Sbjct: 126 TKGRTPQA----IPLADFTLLLATTDEFKLLQPLRDRMRLCLRFGFYSAEELAELIRQRA 181

Query: 197 KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAID 256
                 V       IA RSRGTPR+A RLL+  R        + +T    + A L   ID
Sbjct: 182 AALAWDVDVNVYRPIAARSRGTPRLALRLLQAARRVCRSQGDERVTGVHLERACLLEGID 241

Query: 257 KMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRG 316
            +G    + +YL ++    G G   +  I++ L  P   + ++ EP++I+ G + +  +G
Sbjct: 242 GLGLGPTEQQYLAVL----GEGANRLNVIASRLGLPTRTVAEVTEPFLIRAGLVAKDDQG 297

Query: 317 R 317
           R
Sbjct: 298 R 298


>gi|269214884|ref|ZP_06158888.1| holliday junction DNA helicase RuvB [Neisseria lactamica ATCC
           23970]
 gi|269208795|gb|EEZ75250.1| holliday junction DNA helicase RuvB [Neisseria lactamica ATCC
           23970]
          Length = 131

 Score =  148 bits (374), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 71/129 (55%), Positives = 93/129 (72%)

Query: 203 VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQ 262
           +++E A EIA RSRGTPRIA RLLRRVRDFA+V +  TI   IADAAL  L +D  G D 
Sbjct: 1   MSEEGAEEIAKRSRGTPRIANRLLRRVRDFADVKNNGTIDGGIADAALSMLDVDAQGLDV 60

Query: 263 LDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPI 322
           +D ++L  +   FGGGPVG++ ++A + E  D IED+IEPY+IQQGF+QRTPRGR+    
Sbjct: 61  MDRKFLEAVLHKFGGGPVGLDNVAAAIGESTDTIEDVIEPYLIQQGFLQRTPRGRMATER 120

Query: 323 AWQHLGIDI 331
           A+ H G+ +
Sbjct: 121 AYLHFGLPV 129


>gi|289829035|ref|ZP_06546731.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
          Length = 131

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 71/129 (55%), Positives = 90/129 (69%)

Query: 205 DEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLD 264
           D+ A E+A R+RGTPRIA RLLRRVRDFAEV H   I+ EIA  AL  L +D  GFD +D
Sbjct: 1   DDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGAISAEIAAQALDMLNVDAEGFDYMD 60

Query: 265 LRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAW 324
            + L  +   F GGPVG++ ++A + E R+ IED++EPY+IQQGF+QRTPRGR+    AW
Sbjct: 61  RKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMATVRAW 120

Query: 325 QHLGIDIPH 333
            H GI  P 
Sbjct: 121 NHFGITPPE 129


>gi|309799476|ref|ZP_07693707.1| holliday junction ATP-dependent DNA helicase RuvB [Streptococcus
           infantis SK1302]
 gi|308116890|gb|EFO54335.1| holliday junction ATP-dependent DNA helicase RuvB [Streptococcus
           infantis SK1302]
          Length = 155

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 70/151 (46%), Positives = 100/151 (66%)

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           + +Y  +DL  IV+R A +  + +T EAA E+A+RSRGTPRIA RLL+RVRDFA++    
Sbjct: 1   MEYYAHDDLTEIVERTADIFEMEITHEAAAELALRSRGTPRIANRLLKRVRDFAQIMGDG 60

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I   I D AL  L +D  G D +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+
Sbjct: 61  LIDDVITDKALTMLDVDHEGLDYVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDM 120

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
            EPY+IQ+GFI RT  GR+    A++HLG +
Sbjct: 121 YEPYLIQKGFIMRTRSGRVATAKAYEHLGYE 151


>gi|325107531|ref|YP_004268599.1| ATPase AAA [Planctomyces brasiliensis DSM 5305]
 gi|324967799|gb|ADY58577.1| AAA ATPase central domain protein [Planctomyces brasiliensis DSM
           5305]
          Length = 313

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 100/308 (32%), Positives = 149/308 (48%), Gaps = 15/308 (4%)

Query: 26  TLEEFTGQVEACSNLKVFIEA------AKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +L    GQ  A + L+  ++A           EA  H+L  GP G GKT L +++A+EL 
Sbjct: 10  SLNHVVGQQRAVTVLRTALDAYWHDRSKNGGKEAFPHLLMCGPGGTGKTLLTELIAKELC 69

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
                     I   G +  LL  LE   +L +DEIH LS  V+  LY A+ED +L L   
Sbjct: 70  TECTVELAQNIGNIGQMQGLLMMLESEHILLVDEIHELSETVQVSLYRAIEDRKLFLGGN 129

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199
             P      + L  FTLI ATT   LLT  ++DRF I +RL  Y  +++  ++ +  +  
Sbjct: 130 RKP------VTLPPFTLIGATTDEYLLTPSMRDRFKILLRLQHYSHDEMAVLIDQRTRRL 183

Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259
           G  +   +   +A RSRG PR+A RLL   +  A       I  +  +  L    ID +G
Sbjct: 184 GWEIDAVSVTHLAARSRGVPRLAVRLLESAKRVASSKGMDRIEPKHVEEMLAIEGIDSLG 243

Query: 260 FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLL 319
           FD ++ RYL ++  +   GPV +  ++  L  P+  IE + E   I+ G I +  +GR L
Sbjct: 244 FDPVEQRYLKLLKES--QGPVRLNVLATHLGLPKQTIE-MFERDFIRLGLITKGDKGRAL 300

Query: 320 MPIAWQHL 327
            P   +HL
Sbjct: 301 TPKGVEHL 308


>gi|308126386|ref|ZP_07663741.1| holliday junction ATP-dependent DNA helicase RuvB [Vibrio
           parahaemolyticus AQ4037]
 gi|308109584|gb|EFO47124.1| holliday junction ATP-dependent DNA helicase RuvB [Vibrio
           parahaemolyticus AQ4037]
          Length = 129

 Score =  142 bits (358), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 67/125 (53%), Positives = 89/125 (71%)

Query: 206 EAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDL 265
           E A E+A R+RGTPRIA RLLRRVRD+AEV     I  ++AD AL  L +D  GFD +D 
Sbjct: 4   EGALEVARRARGTPRIANRLLRRVRDYAEVKGNGHICADVADKALNMLDVDAQGFDYMDR 63

Query: 266 RYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQ 325
           + L  I   FGGGPVG++ ++A + E +D IED++EPY+IQQG++QRTPRGR+    A+ 
Sbjct: 64  KLLLAIMEKFGGGPVGLDNMAAAIGEEKDTIEDVLEPYLIQQGYLQRTPRGRIATDRAYL 123

Query: 326 HLGID 330
           H GI+
Sbjct: 124 HFGIE 128


>gi|323219947|gb|EGA04420.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
          Length = 121

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 66/119 (55%), Positives = 83/119 (69%)

Query: 215 SRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARN 274
           +RGTPRIA RLLRRVRDFAEV H   I+ EIA  AL  L +D  GFD +D + L  +   
Sbjct: 1   ARGTPRIANRLLRRVRDFAEVKHDGAISAEIAAQALDMLNVDAEGFDYMDRKLLLAVIDK 60

Query: 275 FGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           F GGPVG++ ++A + E R+ IED++EPY+IQQGF+QRTPRGR+    AW H GI  P 
Sbjct: 61  FFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMATVRAWNHFGITPPE 119


>gi|326392805|ref|ZP_08214061.1| Holliday junction DNA helicase RuvB domain [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325991153|gb|EGD49889.1| Holliday junction DNA helicase RuvB domain [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 111

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 64/110 (58%), Positives = 82/110 (74%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
            E +L+++ +QEDA    LRPR L E+ GQ +    LK++IEAAK R E LDHVL  GPP
Sbjct: 2   EERILTQSFTQEDASEYSLRPRWLSEYIGQQKIKEELKIYIEAAKMRKEPLDHVLLYGPP 61

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDE 113
           GLGKTTLA V++ E+GV  + TSGP I K+GDLAA+LTNL++ D+LFIDE
Sbjct: 62  GLGKTTLATVISNEMGVGIKITSGPAIEKSGDLAAILTNLQENDILFIDE 111


>gi|297520076|ref|ZP_06938462.1| Holliday junction DNA helicase RuvB [Escherichia coli OP50]
          Length = 115

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 66/115 (57%), Positives = 86/115 (74%), Gaps = 1/115 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S   +  ED     +RP+ LEE+ GQ +  S +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEI 114
            GP GLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEI
Sbjct: 61  FGPSGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEI 115


>gi|213022655|ref|ZP_03337102.1| Holliday junction DNA helicase B [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 114

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 65/114 (57%), Positives = 85/114 (74%), Gaps = 1/114 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S   +  ED     +RP+ L E+ GQ +  S +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRLISAGATIAEDVADRAIRPKLLAEYVGQPQVRSQMEIFIQAAKRRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDE 113
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDE
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE 114


>gi|325107722|ref|YP_004268790.1| Holliday junction DNA helicase RuvB domain protein [Planctomyces
           brasiliensis DSM 5305]
 gi|324967990|gb|ADY58768.1| Holliday junction DNA helicase RuvB domain protein [Planctomyces
           brasiliensis DSM 5305]
          Length = 318

 Score =  129 bits (325), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 84/300 (28%), Positives = 148/300 (49%), Gaps = 8/300 (2%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           D+  ++P +L    G       ++V ++A           L  GPPG GK++LA V+A+E
Sbjct: 8   DVQDIKPTSLRHLIGNDHVRQQVQVALDACFEDQVRFPDTLLTGPPGQGKSSLANVIAQE 67

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           L      T G  ++   +L ALL   +D +++ IDE+H L    +  L+  ++  +L + 
Sbjct: 68  LATTLHETLGQSVSGPAELNALLLGAKDGELIHIDEVHELPTEQQTALFICLDQRKLLVT 127

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
             +G    ++ I L++F+L+ +TT    +  PL+DR  + + L +    +L  +V++ ++
Sbjct: 128 NQKG----ALSIPLAKFSLLLSTTDPHKVLQPLRDRMRMVLELAYLTEAELADVVRQRSR 183

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257
                + D    EIA+R RGTPRIA R+L+  R  +       +T      A     ID 
Sbjct: 184 ALNWNIADGVPDEIAVRGRGTPRIALRILQSARRVSRSEGEHEVTFAHLRRACELDRIDG 243

Query: 258 MGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317
            G    + RYL ++    G GP  +  +++ L  P   + D+IEP+MI+ G + +   GR
Sbjct: 244 KGLSSQEQRYLELL----GEGPTRLNVLASCLGVPSKTVSDVIEPFMIRTGLVVKDNGGR 299


>gi|190149555|ref|YP_001968080.1| holliday junction ATP-dependent DNA helicase RuvB [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|189914686|gb|ACE60938.1| holliday junction ATP-dependent DNA helicase RuvB [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
          Length = 137

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 66/120 (55%), Positives = 88/120 (73%), Gaps = 4/120 (3%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + ++S +  +E+  I   +RP+ L ++ GQ      +++FI+AAK R EALDH+L 
Sbjct: 1   MIEADRIISASPKREEEIIDRAIRPKLLADYVGQPSVREQMEIFIKAAKLRDEALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEI---HR 116
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEI   HR
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPYDVLFIDEIPAYHR 120


>gi|213029124|ref|ZP_03343571.1| Holliday junction DNA helicase B [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 85

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 58/85 (68%), Positives = 72/85 (84%)

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           EIHRLS +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+D
Sbjct: 1   EIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRD 60

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAK 197
           RFGI  RL FY++ DL+ IV R A+
Sbjct: 61  RFGIVQRLEFYQVPDLQHIVGRSAR 85


>gi|218660348|ref|ZP_03516278.1| Holliday junction DNA helicase RuvB [Rhizobium etli IE4771]
          Length = 110

 Score =  119 bits (297), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 67/106 (63%), Positives = 79/106 (74%), Gaps = 2/106 (1%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L+S     ED D++L RP++L+EFTGQ EA +NLK+FIEAAK R EALDHVLFVGPPGLG
Sbjct: 7   LISPEKRGEDLDVTL-RPQSLDEFTGQAEARANLKIFIEAAKNRGEALDHVLFVGPPGLG 65

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID 112
           KTTLAQ++A+ELGVNFRSTS           A   + E RDVLFID
Sbjct: 66  KTTLAQIMAKELGVNFRSTSALSSPSRRSRRAADQSRE-RDVLFID 110


>gi|207093215|ref|ZP_03241002.1| Holliday junction DNA helicase B [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 138

 Score =  115 bits (289), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 60/130 (46%), Positives = 88/130 (67%), Gaps = 3/130 (2%)

Query: 203 VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQ 262
           + +E+A EIA RSRGTPRIA RLL+RVRDFA V ++  +   I   AL  L ++++GFD+
Sbjct: 1   IKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMDLNITLHALNELGVNELGFDE 60

Query: 263 LDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPI 322
            DL YL+++A N  G PVG+ TI+A + E    IED+IEP+++  G+++RT +GR+  P 
Sbjct: 61  ADLAYLSLLA-NAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATP- 118

Query: 323 AWQHLGIDIP 332
              H  + IP
Sbjct: 119 -KTHALLKIP 127


>gi|308189856|ref|YP_003922787.1| hypothetical protein MFE_02970 [Mycoplasma fermentans JER]
 gi|307624598|gb|ADN68903.1| hypothetical protein MFE_02970 [Mycoplasma fermentans JER]
          Length = 220

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 65/197 (32%), Positives = 112/197 (56%)

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEI+Y AMED+++D+++G   +++ +++NL  FTLI ATT++ LLT PL+DRFG   RL
Sbjct: 5   VEEIIYNAMEDYKIDIIIGPEGNSKVMRMNLKPFTLIGATTKINLLTQPLKDRFGFIARL 64

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           + Y  +++  I++    +  +         IA  S+GTPR+A  LL+R+ DF+       
Sbjct: 65  SQYNEKEIAKILENSEMVLNIKSERGVIPLIAKYSKGTPRVANHLLKRILDFSIQNKEDE 124

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           IT++   +    L +  +G  +  + YL ++   F      I++I+  L+  RD +   +
Sbjct: 125 ITKKTTYSTFKHLELYDLGLGREHIEYLKVLNETFENKFAAIDSIAGVLNIDRDILIYEL 184

Query: 301 EPYMIQQGFIQRTPRGR 317
           EP ++    I + PRGR
Sbjct: 185 EPLLLYLKLIAKGPRGR 201


>gi|153864253|ref|ZP_01997214.1| Holliday junction DNA helicase RuvB [Beggiatoa sp. SS]
 gi|152146253|gb|EDN72787.1| Holliday junction DNA helicase RuvB [Beggiatoa sp. SS]
          Length = 121

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 54/106 (50%), Positives = 73/106 (68%)

Query: 224 RLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIE 283
           RLLRRVRD+A+V     I + IA  AL  L +D  G D +D + L  I   F GGPVGIE
Sbjct: 4   RLLRRVRDYAQVRADGQINQTIAQQALNLLNVDTYGLDLMDRKLLLSIMEKFEGGPVGIE 63

Query: 284 TISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
            ++A +SE R  IED+IEP+++QQGF++RT RGR++  +AWQH G+
Sbjct: 64  NLAAVISEERGTIEDVIEPFLLQQGFLKRTARGRVVTRLAWQHFGL 109


>gi|3248955|gb|AAD09937.1| Holliday junction DNA helicase RuvB [Coxiella burnetii]
          Length = 114

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 45/92 (48%), Positives = 61/92 (66%)

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I   IA  AL  L +D  G D +D + L  I + F GGPVGIE+++A +SE R  IED+I
Sbjct: 7   INESIAKEALDLLNVDIRGLDVMDRKLLETIIKKFQGGPVGIESLAAAISEERGTIEDVI 66

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EPY+IQ+GFI RTPRGR+   + +QH  + +P
Sbjct: 67  EPYLIQEGFILRTPRGRIATELTYQHFKLPLP 98


>gi|261883772|ref|ZP_06007811.1| Holliday junction DNA helicase RuvB [Campylobacter fetus subsp.
           venerealis str. Azul-94]
          Length = 99

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 44/99 (44%), Positives = 64/99 (64%)

Query: 217 GTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFG 276
           GT R+A RLL+RVRD+A+V     I  E+   AL  L +D  G D +D + +  +   F 
Sbjct: 1   GTQRLANRLLKRVRDYAQVHRDGRIKLELTQEALEMLIVDSHGLDNIDHKLMLNMIDRFK 60

Query: 277 GGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR 315
           GGPVG++T++A + E    +ED+ EPY++Q GFIQRTP+
Sbjct: 61  GGPVGLDTLAASIGEESATLEDVYEPYLLQIGFIQRTPK 99


>gi|323255374|gb|EGA39144.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
          Length = 90

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 43/88 (48%), Positives = 58/88 (65%)

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           A  AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED++EPY+I
Sbjct: 1   AAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLI 60

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           QQGF+QRTPRGR+    AW H GI  P 
Sbjct: 61  QQGFLQRTPRGRMATVRAWNHFGITPPE 88


>gi|169839550|ref|ZP_02872738.1| Holliday junction DNA helicase B [candidate division TM7
           single-cell isolate TM7a]
          Length = 65

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 42/64 (65%), Positives = 54/64 (84%)

Query: 40  LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAAL 99
           + +FI+AAK R E+LDH+L  GPPGLGKTTLA V+A E+GVN + T+GPV+ KAGDLAA+
Sbjct: 2   MNIFIKAAKIRNESLDHILLYGPPGLGKTTLAGVIATEMGVNLKVTTGPVLEKAGDLAAI 61

Query: 100 LTNL 103
           LT+L
Sbjct: 62  LTSL 65


>gi|47094638|ref|ZP_00232270.1| holliday junction DNA helicase RuvB [Listeria monocytogenes str. 4b
           H7858]
 gi|47016988|gb|EAL07889.1| holliday junction DNA helicase RuvB [Listeria monocytogenes str. 4b
           H7858]
          Length = 84

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 39/77 (50%), Positives = 55/77 (71%)

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D  G D +D + L  I ++F GGPVG++TI+A + E R+ IED+ EPY++Q GF+QR
Sbjct: 2   LQVDPRGLDTIDQKLLHTIIQSFRGGPVGLDTIAASIGEERETIEDMQEPYLLQIGFLQR 61

Query: 313 TPRGRLLMPIAWQHLGI 329
           TPRGR+    A+ HLGI
Sbjct: 62  TPRGRIATETAYNHLGI 78


>gi|555267|gb|AAA59231.1| helicase [Norwalk virus]
          Length = 64

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 40/64 (62%), Positives = 50/64 (78%)

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127
           TT++ ++A E+G N + T+GP I K GDL A+LT LE  DVLFIDEIHRL+ +VEEILYP
Sbjct: 1   TTMSMIIANEMGTNIKITTGPSIEKTGDLVAILTALEPGDVLFIDEIHRLNKVVEEILYP 60

Query: 128 AMED 131
           AM D
Sbjct: 61  AMGD 64


>gi|291277124|ref|YP_003516896.1| helicase-like protein [Helicobacter mustelae 12198]
 gi|290964318|emb|CBG40168.1| helicase-like protein [Helicobacter mustelae 12198]
          Length = 394

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 68/211 (32%), Positives = 100/211 (47%), Gaps = 27/211 (12%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           SLLRP++ ++F GQ    S   VF    ++      H  F GPPG+GKTTLA++VA+EL 
Sbjct: 6   SLLRPKSFKDFVGQEHLFSKDSVFSRVLESGH--FPHSFFYGPPGVGKTTLARIVAKELE 63

Query: 80  VNFRSTSGPVIAKAGDLAAL--LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           + F   +G   A      AL    N   + V+FIDE+HRLS   +E L P ME+ Q    
Sbjct: 64  MPFLEFNGVDFALESLRCALKEYKNTLIKPVVFIDEVHRLSKNQQEFLLPVMENHQA--- 120

Query: 138 VGEGPSARSVKINLSRFTLIAATTR--VGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
                             ++ A+T+    +LTN L+ R  I + L+  +   L+ I+Q+ 
Sbjct: 121 -----------------IILGASTQNPFSILTNALRSR-SILLELHPLKSHHLREILQKA 162

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
             L    +T +A   +   S G  R    LL
Sbjct: 163 LDLYPCKITSDARVYLMDSSNGDARAMLHLL 193


>gi|239906458|ref|YP_002953199.1| putative ATPase [Desulfovibrio magneticus RS-1]
 gi|239796324|dbj|BAH75313.1| putative ATPase [Desulfovibrio magneticus RS-1]
          Length = 408

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 109/233 (46%), Gaps = 32/233 (13%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  LE+F GQ    S L   + A +     L  +L  GPPG GK+TLA ++AR  G  
Sbjct: 15  IRPAKLEDFVGQAHVISRLTNMLAAPR-----LPSLLLFGPPGCGKSTLALILARAKGRP 69

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VG 139
           +   S P   +AG LAAL   ++ +++L +DE+HR S   ++   P +E  ++ L+    
Sbjct: 70  YVRVSAP---EAG-LAALRELIKGKEILILDELHRFSKAQQDFFLPILETGEIVLLATTT 125

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199
           E PS    +  LSR  ++    R+G LT+P                  L  + +RGA+  
Sbjct: 126 ENPSFSVTRQLLSRLHVL----RLGPLTHP-----------------QLMVLAERGAREA 164

Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           G+A+  E+   IAM S G  R    L+      +E   A    R+    AL R
Sbjct: 165 GMALAKESLETIAMLSSGDGRTLLNLVEYTAALSEDKRAPDELRKHLPEALAR 217


>gi|305432754|ref|ZP_07401913.1| ATPase [Campylobacter coli JV20]
 gi|304444151|gb|EFM36805.1| ATPase [Campylobacter coli JV20]
          Length = 393

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 77/256 (30%), Positives = 115/256 (44%), Gaps = 48/256 (18%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
            RP+TL+E  GQ E     K FI   K     L H LF GP G GKTT A+VVA++ G++
Sbjct: 7   FRPKTLDEILGQQELVEVFKKFISMQK-----LPHSLFFGPAGCGKTTFARVVAKDFGLD 61

Query: 82  FRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138
           F    G    K  DL  ++ N ++   + ++FIDEIHRLS   +E+L   ME++      
Sbjct: 62  FYEFDGGNF-KLEDLRKIIENYKNSLYKPLIFIDEIHRLSKTQQEMLLIPMENY------ 114

Query: 139 GEGPSARSVKINLSRFTLIAATTRVGLLTNP-LQDRFGIPIRLNFYEI-----EDLKTIV 192
                         R  +I A+T      NP      GI  R   +E      +DL+ ++
Sbjct: 115 --------------RCIVIGASTE-----NPYFVLSSGIRSRSMLFEFKNLGQKDLELLL 155

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           +R  +     + D A  E  ++S        R +  + +FA V + K IT E  +   LR
Sbjct: 156 ERVQQKIAFKIEDNAK-EFLLKS-----FDARAMLNLLEFALVLNEKEITLE--NLKKLR 207

Query: 253 LAIDKMGFDQLDLRYL 268
             ++  G    D  Y+
Sbjct: 208 NGVNSEGVSSKDTHYI 223


>gi|291547110|emb|CBL20218.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [Ruminococcus sp. SR1/5]
          Length = 440

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/130 (38%), Positives = 70/130 (53%), Gaps = 10/130 (7%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           S+ + QE    S LRPRTL+E  GQ       K+   A KA  + L  V+F GPPG GKT
Sbjct: 9   SKTLDQESPLASRLRPRTLDEVVGQQHIVGKDKLLYRAIKA--DKLTSVIFYGPPGTGKT 66

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIV 121
           TLA+V+A     +F   +  V  K  D+ A++   +D       + +LFIDEIHR +   
Sbjct: 67  TLAKVIANTTSASFTQINATVAGKK-DMEAVVKQAQDDLGMYGKKTILFIDEIHRFNKGQ 125

Query: 122 EEILYPAMED 131
           ++ L P +ED
Sbjct: 126 QDYLLPFVED 135


>gi|260437226|ref|ZP_05791042.1| ATPase, AAA family [Butyrivibrio crossotus DSM 2876]
 gi|292810539|gb|EFF69744.1| ATPase, AAA family [Butyrivibrio crossotus DSM 2876]
          Length = 446

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 46/129 (35%), Positives = 71/129 (55%), Gaps = 10/129 (7%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
            N+++E+   S +RP+TL+E  GQ       K+   A KA  + L  ++F GPPG GKTT
Sbjct: 10  NNMTKEEPLASRMRPKTLDEVMGQKHIIGKDKLLYRAIKA--DKLSSIIFYGPPGTGKTT 67

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVE 122
           LA+V+A     +FR  +  V  K  D+  ++   +D       R +LF+DEIHR +   +
Sbjct: 68  LAKVIANTTSASFRQINATVAGKK-DMEDVVNGAKDIMASMGQRTILFVDEIHRFNKGQQ 126

Query: 123 EILYPAMED 131
           + L P +ED
Sbjct: 127 DYLLPYVED 135


>gi|169836550|ref|ZP_02869738.1| Holliday junction DNA helicase B [candidate division TM7
           single-cell isolate TM7a]
          Length = 85

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 37/76 (48%), Positives = 52/76 (68%)

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D  G D+LD   L  I   + GGPVGIET+S  L E R  IE++ EPY+++ GFI+RTP
Sbjct: 1   MDDNGLDELDRNILLSIINVYNGGPVGIETLSLLLGEDRRTIEEVYEPYLVKIGFIKRTP 60

Query: 315 RGRLLMPIAWQHLGID 330
           RGR++  + + HLGI+
Sbjct: 61  RGRVVTELGYNHLGIE 76


>gi|320528095|ref|ZP_08029260.1| recombination factor protein RarA [Solobacterium moorei F0204]
 gi|320131443|gb|EFW24008.1| recombination factor protein RarA [Solobacterium moorei F0204]
          Length = 446

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 91/179 (50%), Gaps = 17/179 (9%)

Query: 2   MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD  G  S    +++  ++  +RP TLEE  GQ       K+   A KA  + L  ++F 
Sbjct: 1   MDLFGYASEETKKKEEPLAARMRPSTLEEVVGQEHIIGKDKLLYRAIKA--DKLGSLIFY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTN-------LEDRDVLFIDE 113
           GPPG GKTTLAQV+A     +FR  +  +  K  DL  ++T+        + + +LFIDE
Sbjct: 59  GPPGTGKTTLAQVIANSTSADFRQVNATIAGKK-DLEQVITHAIDLMSMYQKKTILFIDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLMVG---EGP--SARSVKINLSRFTLIAATTRVGLLT 167
           IHR +   ++ L P +ED  + +++G   E P        I+ SR   + + T+  ++T
Sbjct: 118 IHRFNKGQQDYLLPYVEDGTI-ILIGATTENPYFEVNQALISRSRIFQLKSLTKENIMT 175


>gi|255284508|ref|ZP_05349063.1| replication-associated recombination protein A [Bryantella
           formatexigens DSM 14469]
 gi|255264944|gb|EET58149.1| replication-associated recombination protein A [Bryantella
           formatexigens DSM 14469]
          Length = 438

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 52/144 (36%), Positives = 79/144 (54%), Gaps = 11/144 (7%)

Query: 2   MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD    + +N  +++A + S LRPRTLEE  GQ E     K+   A KA  + L  ++F 
Sbjct: 1   MDLFDYMRQNTMEKEAPLASRLRPRTLEEVVGQQEIIGEGKLLYRAIKA--DKLGSLIFY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDE 113
           GPPG GKTTLA+V+A     +F+  +  V  K  D+  ++   +D       + +LF+DE
Sbjct: 59  GPPGTGKTTLAKVIANTTSADFKQINATVAGKK-DMEDVVKAAKDSLGMYGKKTILFVDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM 137
           IHR +   ++ L P +ED  L L+
Sbjct: 118 IHRFNKGQQDYLLPFVEDGTLILI 141


>gi|225574529|ref|ZP_03783139.1| hypothetical protein RUMHYD_02606 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038260|gb|EEG48506.1| hypothetical protein RUMHYD_02606 [Blautia hydrogenotrophica DSM
           10507]
          Length = 439

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 86/191 (45%), Gaps = 41/191 (21%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           S LRP TLEE  GQ       K+   A KA  + L  ++F GPPG GKTTLA+V+A    
Sbjct: 20  SRLRPSTLEEVVGQTHIVGKDKLLYRAIKA--DKLSSIIFYGPPGTGKTTLAKVIANTTS 77

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDF 132
            NF   +  V  K  D+ A++   ++       + +LFIDEIHR +   ++ L P +ED 
Sbjct: 78  ANFTQINATVAGKK-DMEAVIKQAQNDRGMFGKKTILFIDEIHRFNKGQQDYLLPFVED- 135

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG------IPIRLNFYEIE 186
                                  LI ATT      NP  +  G      +   L   E E
Sbjct: 136 -------------------GTIILIGATTE-----NPYFEVNGALLSRSVIFELKQLEKE 171

Query: 187 DLKTIVQRGAK 197
           ++KT+++R  K
Sbjct: 172 EIKTLIRRAVK 182


>gi|308189834|ref|YP_003922765.1| hypothetical protein MFE_02740 [Mycoplasma fermentans JER]
 gi|307624576|gb|ADN68881.1| hypothetical protein MFE_02740 [Mycoplasma fermentans JER]
          Length = 89

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/89 (40%), Positives = 52/89 (58%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           +LRP    EF GQ +    LK  IE ++ R E LDH+LF GPPG GKT+LA ++A EL  
Sbjct: 1   MLRPANFFEFVGQEKLIYTLKTMIEGSRYRKEPLDHILFYGPPGTGKTSLASILANELDT 60

Query: 81  NFRSTSGPVIAKAGDLAALLTNLEDRDVL 109
                 G ++ K  D+  +  N+++ +VL
Sbjct: 61  KIHYLQGALLEKKSDILTVFANVKENEVL 89


>gi|213621617|ref|ZP_03374400.1| Holliday junction DNA helicase B [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 64

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/63 (52%), Positives = 47/63 (74%)

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED++EPY+IQQGF+QRTP
Sbjct: 2   VDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTP 61

Query: 315 RGR 317
           RGR
Sbjct: 62  RGR 64


>gi|291562233|emb|CBL41049.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [butyrate-producing bacterium SS3/4]
          Length = 458

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 96/219 (43%), Gaps = 40/219 (18%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           S +RP TL+E  GQ       K+   A KA  + L  V+F GPPG GKTTLA+V+A    
Sbjct: 34  SRMRPTTLDEVVGQKHIIGKDKLLYRAIKA--DKLGSVIFYGPPGTGKTTLAKVIANTTS 91

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDF 132
             F   +  V  K  D+  ++ N +D       + +LF+DEIHR +   ++ L P +ED 
Sbjct: 92  ARFEQINATVAGKK-DMEEIVKNAKDSIGMYGQKTILFVDEIHRFNKSQQDYLLPFVED- 149

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGL--LTNPLQDRFGIPIRLNFYEIEDLKT 190
                                 TLI ATT      + N L  R  I   L   E +D++ 
Sbjct: 150 -------------------GTITLIGATTENPYFEVNNALLSRSRI-FELKPLEKQDIRE 189

Query: 191 IVQR-------GAKLTGLAVTDEAACEIAMRSRGTPRIA 222
           +V R       G       +TDEAA  +A  + G  R A
Sbjct: 190 LVMRAVYDTEKGMGTYSADITDEAADFLADVANGDARAA 228


>gi|255323655|ref|ZP_05364785.1| ATPase, AAA family [Campylobacter showae RM3277]
 gi|255299369|gb|EET78656.1| ATPase, AAA family [Campylobacter showae RM3277]
          Length = 394

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/207 (30%), Positives = 92/207 (44%), Gaps = 38/207 (18%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
            RPR+L+E  GQ E     K FIE  K     + H +F GP G GKT+ A+VVAR +  +
Sbjct: 8   FRPRSLDEICGQRELVGVFKKFIENKK-----IPHSIFYGPAGCGKTSFARVVARSMEYD 62

Query: 82  FRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138
           F    G  + K  +   +L N E+   + + FIDEIHRLS   +E L   ME+++  ++ 
Sbjct: 63  FYEFDGGNL-KIEEFRKILKNHENALSKPLFFIDEIHRLSKTQQEALLIPMENYRAAII- 120

Query: 139 GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI-----EDLKTIVQ 193
             G S  +  I LS                      GI  R   +E      ED + +++
Sbjct: 121 --GASTENPYITLSS---------------------GIRSRSMLFEFKPLASEDFEKLLE 157

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPR 220
           R        ++DEA   +   S G  R
Sbjct: 158 RVRDEVKFDISDEAKAYLVKSSGGDAR 184


>gi|292491563|ref|YP_003527002.1| ATPase AAA [Nitrosococcus halophilus Nc4]
 gi|291580158|gb|ADE14615.1| AAA ATPase central domain protein [Nitrosococcus halophilus Nc4]
          Length = 603

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 125/290 (43%), Gaps = 41/290 (14%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRD-------- 107
           +++F GP GLGKT LA+ VA+ LG+         +     L   +     ++        
Sbjct: 319 NLMFSGPGGLGKTELARRVAKALGLPLVDVPATTVRDVDSLLERINQTLQKNGQEPIEVG 378

Query: 108 -------------VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRF 154
                        V+F+DE+H L    +  L   M + +    VG     + V  +    
Sbjct: 379 TDSGLKKMEYPPLVIFLDEVHELRRNADTFL--NMFEPKEKRAVG-----KKVVGDFKNA 431

Query: 155 TLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMR 214
           TL+AATT  GLL +P   RF I I L  Y  E++  I++   + +G AV +     +A R
Sbjct: 432 TLLAATTTPGLLPSPFLSRFRI-IDLVPYTAEEVAAIIKPVFQKSGKAVEESFLVGLAKR 490

Query: 215 SRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA-----IDKMGFDQLDLRYLT 269
            R  PR+A   ++R  +             + +  L R++     +D  G  QLD  YL 
Sbjct: 491 GRLNPRVA---IQRAEEMLSHHLFDEKQYPLNEIGLERISTESWRVDTHGLRQLDHTYLK 547

Query: 270 MIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLL 319
            +      GP G+  + + L   R+ I  ++EPY++Q   I  T +GR L
Sbjct: 548 ALQ----SGPRGLSALVSLLPVEREEITQMVEPYLLQLEAISLTTKGREL 593


>gi|325660738|ref|ZP_08149366.1| hypothetical protein HMPREF0490_00098 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472812|gb|EGC76022.1| hypothetical protein HMPREF0490_00098 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 438

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/125 (37%), Positives = 67/125 (53%), Gaps = 10/125 (8%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           S LRP+TLEE  GQ       K+   A KA  + L  ++F GPPG GKTTLA+V+A    
Sbjct: 20  SRLRPKTLEEVVGQQHIIGKDKLLYRAIKA--DKLSSIIFYGPPGTGKTTLAKVIANTTS 77

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDF 132
            NF   +  V  K  D+  ++   +D       + +LF+DEIHR +   ++ L P +ED 
Sbjct: 78  ANFTQINATVAGKK-DMEEVVRQAKDNQGMYGKKTILFVDEIHRFNKGQQDYLLPFVEDG 136

Query: 133 QLDLM 137
            L L+
Sbjct: 137 TLILI 141


>gi|160937850|ref|ZP_02085209.1| hypothetical protein CLOBOL_02742 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439289|gb|EDP17042.1| hypothetical protein CLOBOL_02742 [Clostridium bolteae ATCC
           BAA-613]
          Length = 445

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 73/135 (54%), Gaps = 10/135 (7%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           +++ +E    S LRPRTL+E  GQ       K+   A +A  + L  ++F GPPG GKTT
Sbjct: 17  KDMEKESPLASRLRPRTLDEVVGQQHIVGKDKLLYRAIQA--DKLGSIIFYGPPGTGKTT 74

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVE 122
           LA+V+A     +FR  +  V  K  D+  ++   +D       + +LF+DEIHR +   +
Sbjct: 75  LAKVIANTTSADFRQINATVAGKK-DMEEVVKEAKDNIGMYGRKTILFVDEIHRFNKGQQ 133

Query: 123 EILYPAMEDFQLDLM 137
           + L P +ED  L L+
Sbjct: 134 DYLLPFVEDGTLILI 148


>gi|291521790|emb|CBK80083.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [Coprococcus catus GD/7]
          Length = 444

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 100/210 (47%), Gaps = 22/210 (10%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           S LRPRTL+E  GQ       K+   A KA  + L  ++  GPPG GKTT+A+V+A    
Sbjct: 20  SRLRPRTLDEIVGQQHILGRDKMLYRAIKA--DKLSSIILYGPPGTGKTTIAKVIANTTS 77

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDF 132
             F   +  V  K  D+  ++   +D       R +LF+DEIHR +   ++ L P +ED 
Sbjct: 78  AAFTQINATVAGKK-DMEQVVQEAKDRMGMYGKRTILFVDEIHRFNKGQQDYLLPFVEDG 136

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            L +++G        ++N +   LI+ +    L     +D  G+ IR   Y+ E      
Sbjct: 137 TL-ILIGATTENPYFEVNGA---LISRSVIFELKPLSAED-IGVLIRRAVYDTE------ 185

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
            RG    G  ++D+A   +A  S G  R+A
Sbjct: 186 -RGMGSYGAEISDDAVDFLADMSGGDARMA 214


>gi|315635453|ref|ZP_07890719.1| ATPase [Arcobacter butzleri JV22]
 gi|315480211|gb|EFU70878.1| ATPase [Arcobacter butzleri JV22]
          Length = 431

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 42/114 (36%), Positives = 65/114 (57%), Gaps = 6/114 (5%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP +LE F GQ    S  K   +  K +   + H+ F G PG GKTTLA+++A+E+G +
Sbjct: 8   LRPTSLETFVGQSHIISKDKALYKLIKQKD--IPHLFFYGKPGTGKTTLAKIIAKEIGTD 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDF 132
           +   +   I K  DL  +    +    + ++FIDE+HRLS   +E+L P ME++
Sbjct: 66  YYYFNATSI-KVEDLRKVFDKYKGALIKPLIFIDEVHRLSKNQQEVLLPIMENY 118


>gi|331085539|ref|ZP_08334623.1| hypothetical protein HMPREF0987_00926 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330407426|gb|EGG86928.1| hypothetical protein HMPREF0987_00926 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 438

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/125 (37%), Positives = 67/125 (53%), Gaps = 10/125 (8%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           S LRP+TLEE  GQ       K+   A KA  + L  ++F GPPG GKTTLA+V+A    
Sbjct: 20  SRLRPKTLEEVVGQHHIIGKDKLLYRAIKA--DKLSSIIFYGPPGTGKTTLAKVIANTTS 77

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDF 132
            NF   +  V  K  D+  ++   +D       + +LF+DEIHR +   ++ L P +ED 
Sbjct: 78  ANFTQINATVAGKK-DMEEVVRQAKDNQGMYGKKTILFVDEIHRFNKGQQDYLLPFVEDG 136

Query: 133 QLDLM 137
            L L+
Sbjct: 137 TLILI 141


>gi|154502582|ref|ZP_02039642.1| hypothetical protein RUMGNA_00395 [Ruminococcus gnavus ATCC 29149]
 gi|153796774|gb|EDN79194.1| hypothetical protein RUMGNA_00395 [Ruminococcus gnavus ATCC 29149]
          Length = 438

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 66/209 (31%), Positives = 90/209 (43%), Gaps = 46/209 (22%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           +   QE    S +RP+TLEE  GQ       K+   A KA  + L  ++F GPPG GKTT
Sbjct: 10  KTQEQESPLASRMRPQTLEEVVGQQHIIGKDKLLYRAIKA--DKLGSIIFYGPPGTGKTT 67

Query: 70  LAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           LA+V+A      F+  +  V  K        +   LL     + +LFIDEIHR +   ++
Sbjct: 68  LAKVIAHTTSAEFKQINATVAGKKDMEQVVNEAKELLGMYRKKTILFIDEIHRFNKGQQD 127

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI----- 178
            L P +ED                       TLI ATT      NP  +  G  I     
Sbjct: 128 YLLPFVED--------------------GTITLIGATTE-----NPYFEVNGALISRSSV 162

Query: 179 -RLNFYEIEDLKTIVQRGAKLTGLAVTDE 206
             L   E ED++T+++R       AV DE
Sbjct: 163 FELKSLEKEDIRTLLKR-------AVYDE 184


>gi|295109221|emb|CBL23174.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [Ruminococcus obeum A2-162]
          Length = 439

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 48/130 (36%), Positives = 68/130 (52%), Gaps = 10/130 (7%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           S+ + +E    S LRP TLEE  GQ       K+   A KA  + L  V+F GPPG GKT
Sbjct: 9   SKTLDRESPLASRLRPTTLEEVVGQEHIVGKDKLLYRAIKA--DKLTSVIFYGPPGTGKT 66

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIV 121
           TLA+V+A     NF   +  V  K  D+  ++   ++       + +LFIDEIHR +   
Sbjct: 67  TLAKVIAHTTSANFTQINATVAGKK-DMEQVVQEAQNNLGMYGRKTILFIDEIHRFNKGQ 125

Query: 122 EEILYPAMED 131
           ++ L P +ED
Sbjct: 126 QDYLLPFVED 135


>gi|157736320|ref|YP_001489003.1| recombination factor protein RarA [Arcobacter butzleri RM4018]
 gi|157698174|gb|ABV66334.1| ATPase, AAA family protein [Arcobacter butzleri RM4018]
          Length = 394

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 42/114 (36%), Positives = 64/114 (56%), Gaps = 6/114 (5%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP  LE F GQ    S  K   +  K +   + H+ F G PG GKTTLA+++A+E+G +
Sbjct: 8   LRPTNLETFVGQSHIISKDKALYKLIKQKD--IPHLFFYGKPGTGKTTLAKIIAKEIGTD 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDF 132
           +   +   I K  DL  +    +    + ++FIDE+HRLS   +E+L P ME++
Sbjct: 66  YYYFNATSI-KVEDLRKVFDKYKGALIKPLIFIDEVHRLSKNQQEVLLPIMENY 118


>gi|210608530|ref|ZP_03287903.1| hypothetical protein CLONEX_00082 [Clostridium nexile DSM 1787]
 gi|210152981|gb|EEA83987.1| hypothetical protein CLONEX_00082 [Clostridium nexile DSM 1787]
          Length = 443

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 49/144 (34%), Positives = 76/144 (52%), Gaps = 11/144 (7%)

Query: 2   MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD    +  N +Q+++ + S +RP+TLEE  GQ       K+   A KA  + L  ++F 
Sbjct: 1   MDLFDYMRENAAQKESPLASRMRPKTLEEVVGQQHIIGQDKLLYRAIKA--DKLSSIIFY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDE 113
           GPPG GKTTLA+V+A      F   +  V  K  D+  ++   +D       + +LF+DE
Sbjct: 59  GPPGTGKTTLAKVIANTTSAQFTQINATVAGKK-DMEEVVRKAKDNLGMYGQKTILFVDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM 137
           IHR +   ++ L P +ED  L L+
Sbjct: 118 IHRFNKGQQDYLLPFVEDGTLILI 141


>gi|312143966|ref|YP_003995412.1| AAA ATPase central domain protein [Halanaerobium sp. 'sapolanicus']
 gi|311904617|gb|ADQ15058.1| AAA ATPase central domain protein [Halanaerobium sp. 'sapolanicus']
          Length = 443

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 56/144 (38%), Positives = 76/144 (52%), Gaps = 18/144 (12%)

Query: 8   LSRNVSQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           L  N  QE  D  L   +RPR LEEF GQ +     K+   A KA  + L  ++F GPPG
Sbjct: 3   LFENSDQEKKDQPLAYRMRPRNLEEFFGQKDIVGENKLLSRAIKA--DRLRSLIFYGPPG 60

Query: 65  LGKTTLAQVVARELGVNFRS----TSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIH 115
            GKT+LAQV+A +    F      TSG      VI KA    +L      + +LFIDEIH
Sbjct: 61  TGKTSLAQVIANQTKAEFIKLNAVTSGVKDIREVIKKAKSNRSLYNT---KTILFIDEIH 117

Query: 116 RLSIIVEEILYPAMEDFQLDLMVG 139
           R +   ++ L P++E+  L +M+G
Sbjct: 118 RFNKSQQDALLPSVENGTL-IMIG 140


>gi|152989818|ref|YP_001355540.1| recombination factor protein RarA [Nitratiruptor sp. SB155-2]
 gi|151421679|dbj|BAF69183.1| ATPase, AAA family [Nitratiruptor sp. SB155-2]
          Length = 391

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 66/206 (32%), Positives = 99/206 (48%), Gaps = 35/206 (16%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP++LEEF GQ +  +    F +  K RA  L H  F GPPG GKTTLA++VA+E   +F
Sbjct: 5   RPKSLEEFIGQRQLLAPEAPFYKLLKQRA--LPHSFFFGPPGTGKTTLARIVAKEYESDF 62

Query: 83  RSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
              +   + K  ++  ++   +    + +LFIDE+HRLS   +E+L P ME  +  L++G
Sbjct: 63  FELNATSL-KIEEIRKIVHRYKGSFIKPLLFIDEVHRLSKNQQEVLLPIMEK-EEALILG 120

Query: 140 ---EGPSARSVKINLSRFTLIAATTRVGLLTN--PLQDRFGIPIRLNFYEIEDLKTIVQR 194
              E P           F+L AA     +L    PL +             EDL  +V R
Sbjct: 121 ASTENPF----------FSLTAAIRSRSMLFEFRPLNE-------------EDLNQLVHR 157

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPR 220
             +    ++ +EA   I   S+G  R
Sbjct: 158 VCQNEECSIDEEAKEYIIRISQGDAR 183


>gi|1777932|gb|AAC45724.1| RuvB' [Treponema pallidum]
          Length = 82

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 34/59 (57%), Positives = 46/59 (77%)

Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
          LRPR L++F GQ +   NL++FI+AA+ R E+LDH+  +GPPG+GKTTLA + A ELGV
Sbjct: 24 LRPRLLKDFLGQEKTKRNLRLFIQAARDRNESLDHLFLIGPPGVGKTTLAHITACELGV 82


>gi|332704198|ref|ZP_08424286.1| AAA ATPase central domain protein [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332554347|gb|EGJ51391.1| AAA ATPase central domain protein [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 426

 Score = 75.9 bits (185), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 66/213 (30%), Positives = 96/213 (45%), Gaps = 32/213 (15%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  L+EF GQ    S L+  +     RA+ L  +L  GPPG GK+TLA ++AR  G  
Sbjct: 19  IRPADLDEFVGQRHLKSKLEALL-----RAKRLPSLLLFGPPGSGKSTLALLLARSTGRP 73

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VG 139
           +R  S P       LA L   L   D+L +DE+HR S   ++   P +E+ ++ L+    
Sbjct: 74  YRRVSAPETG----LAELRKQLSGVDLLILDEVHRYSKAQQDFFLPQLENGEVTLIATTT 129

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199
           E PS    +  LSR  ++    R+  L +P                 DL  I  RG K  
Sbjct: 130 ENPSFSVTRQLLSRLHVL----RLMPLADP-----------------DLLEITNRGLKAL 168

Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
            L + +E+   +A  S G  R    LL  V + 
Sbjct: 169 NLEIPEESRRLVAGVSGGDARTLLNLLEYVAEL 201


>gi|296271689|ref|YP_003654320.1| AAA ATPase central domain-containing protein [Arcobacter
           nitrofigilis DSM 7299]
 gi|296095864|gb|ADG91814.1| AAA ATPase central domain protein [Arcobacter nitrofigilis DSM
           7299]
          Length = 393

 Score = 75.9 bits (185), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 70/117 (59%), Gaps = 6/117 (5%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           S+LRP +L++F GQ    S  KV  +    + E + H+ F G PG GKTTLA+++A+ + 
Sbjct: 6   SILRPNSLQDFVGQNHIISKNKVLYKLI-IKGE-IPHLFFYGKPGTGKTTLAKIIAKTIN 63

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
            ++   +   + K  DL  + +  ++   + ++FIDE+HRLS   +E+L P ME++Q
Sbjct: 64  TDYFYFNATSL-KIEDLRKVFSKYDNSLIKPIVFIDEVHRLSKNQQEVLLPIMENYQ 119


>gi|167758834|ref|ZP_02430961.1| hypothetical protein CLOSCI_01177 [Clostridium scindens ATCC 35704]
 gi|167663574|gb|EDS07704.1| hypothetical protein CLOSCI_01177 [Clostridium scindens ATCC 35704]
          Length = 438

 Score = 75.9 bits (185), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 62/198 (31%), Positives = 88/198 (44%), Gaps = 39/198 (19%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           +N+ +E    S LRP TLEE  GQ       K+   A KA  + L  ++F GPPG GKTT
Sbjct: 10  KNLDKEAPLASRLRPSTLEEVVGQQHIIGKDKLLYRAIKA--DKLSSIIFYGPPGTGKTT 67

Query: 70  LAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           LA+V+A      F   +  V  K       G     L   + + +LF+DEIHR +   ++
Sbjct: 68  LAKVIANTTSAVFTQINATVAGKKDMEEVVGRAKETLGMYQKKTILFVDEIHRFNKSQQD 127

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI-RLNF 182
            L P +ED                        LI ATT      NP  +  G  I R + 
Sbjct: 128 YLLPFVED--------------------GTIILIGATTE-----NPYFEVNGALISRSSI 162

Query: 183 YEI-----EDLKTIVQRG 195
           +E+     ED+KT+++R 
Sbjct: 163 FELHPLDKEDIKTVIRRA 180


>gi|153814369|ref|ZP_01967037.1| hypothetical protein RUMTOR_00579 [Ruminococcus torques ATCC 27756]
 gi|317500083|ref|ZP_07958318.1| replication-associated recombination protein A [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|331087693|ref|ZP_08336619.1| hypothetical protein HMPREF1025_00202 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145848765|gb|EDK25683.1| hypothetical protein RUMTOR_00579 [Ruminococcus torques ATCC 27756]
 gi|316898568|gb|EFV20604.1| replication-associated recombination protein A [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|330409674|gb|EGG89110.1| hypothetical protein HMPREF1025_00202 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 438

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/119 (37%), Positives = 64/119 (53%), Gaps = 10/119 (8%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           S +RP+TL+E  GQ       K+   A KA  + L  V+F GPPG GKTTLA+V+A    
Sbjct: 20  SRMRPKTLDEVVGQQHIIGKDKLLYRAIKA--DKLSSVIFYGPPGTGKTTLAKVIANTTS 77

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131
             F+  +  V  K  D+  ++   +D       R +LFIDEIHR +   ++ L P +ED
Sbjct: 78  AEFKQINATVAGKK-DMEEVVKEAKDMQGMYGKRTILFIDEIHRFNKGQQDYLLPFVED 135


>gi|148983663|ref|ZP_01816982.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           SP3-BS71]
 gi|147923810|gb|EDK74922.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           SP3-BS71]
          Length = 83

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/78 (42%), Positives = 51/78 (65%)

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D  G D +D + L  +   + GGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GFI R
Sbjct: 2   LDVDHEGLDYVDQKILRTMIEMYSGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMR 61

Query: 313 TPRGRLLMPIAWQHLGID 330
           T  GR+    A++HLG +
Sbjct: 62  TRSGRVATAKAYEHLGYE 79


>gi|169836410|ref|ZP_02869598.1| Holliday junction DNA helicase B [candidate division TM7
           single-cell isolate TM7a]
          Length = 62

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/49 (67%), Positives = 41/49 (83%)

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
           +A V+A E+G N R TSGP I +AGDLA++LTNL+D D+LFIDEIHRLS
Sbjct: 1   MASVIANEMGTNLRVTSGPAIERAGDLASILTNLQDNDILFIDEIHRLS 49


>gi|153809776|ref|ZP_01962444.1| hypothetical protein RUMOBE_00157 [Ruminococcus obeum ATCC 29174]
 gi|149833954|gb|EDM89034.1| hypothetical protein RUMOBE_00157 [Ruminococcus obeum ATCC 29174]
          Length = 427

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/130 (36%), Positives = 68/130 (52%), Gaps = 10/130 (7%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           S+ + +E    S LRP TL+E  GQ       K+   A KA  + L  V+F GPPG GKT
Sbjct: 9   SKTLDRESPLASRLRPTTLDEVVGQEHIVGKDKLLYRAIKA--DKLTSVIFYGPPGTGKT 66

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIV 121
           TLA+V+A     +F   +  V  K  D+  ++   +DR        +LFIDEIHR +   
Sbjct: 67  TLAKVIANTTSASFTQINATVAGKK-DMEEVVKEAQDRLGMYGKKTILFIDEIHRFNKGQ 125

Query: 122 EEILYPAMED 131
           ++ L P +ED
Sbjct: 126 QDYLLPFVED 135


>gi|290769987|gb|ADD61754.1| putative protein [uncultured organism]
          Length = 440

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 94/221 (42%), Gaps = 48/221 (21%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP TL+E  GQ       K+   A KA  + L  V+F GPPG GKTTLA+++A      
Sbjct: 22  LRPETLDEMVGQSHIIGKDKLLYRAIKA--DKLSSVIFYGPPGTGKTTLARIIANTTSAE 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F   +  V  K  D+  ++   +D       + +LF+DEIHR +   ++ L P +ED   
Sbjct: 80  FNQVNATVAGKK-DMEEVVAKAKDNLGMYGRKTILFVDEIHRFNKGQQDYLLPFVED--- 135

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG------IPIRLNFYEIEDL 188
                                LI ATT      NP  +  G      I   L   E ED+
Sbjct: 136 -----------------GTIILIGATTE-----NPYFEVNGALISRSIIFELKPLEKEDI 173

Query: 189 KTIVQR-------GAKLTGLAVTDEAACEIAMRSRGTPRIA 222
           KTI++R       G      A+ D+A   +A  S G  R A
Sbjct: 174 KTIIKRAVYDEKKGMGSYNAAIDDDALEFLADISNGDARNA 214


>gi|225386739|ref|ZP_03756503.1| hypothetical protein CLOSTASPAR_00487 [Clostridium asparagiforme
           DSM 15981]
 gi|225047150|gb|EEG57396.1| hypothetical protein CLOSTASPAR_00487 [Clostridium asparagiforme
           DSM 15981]
          Length = 443

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/125 (36%), Positives = 68/125 (54%), Gaps = 10/125 (8%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           S LRP+TL+E  GQ       K+   A KA  + L  ++F GPPG GKTTLA+V+A    
Sbjct: 22  SRLRPKTLDEVVGQQHIVGRDKLLYRAIKA--DKLGSIIFYGPPGTGKTTLAKVIANTTS 79

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDF 132
            +FR  +  V  K  D+  ++   +D       + +LF+DEIHR +   ++ L P +ED 
Sbjct: 80  ADFRQINATVAGKK-DMEEVVHAAKDNMGMYGKKTILFVDEIHRFNKGQQDYLLPFVEDG 138

Query: 133 QLDLM 137
            L L+
Sbjct: 139 TLILI 143


>gi|223038447|ref|ZP_03608741.1| ATPase, AAA family protein [Campylobacter rectus RM3267]
 gi|222880304|gb|EEF15391.1| ATPase, AAA family protein [Campylobacter rectus RM3267]
          Length = 394

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/115 (39%), Positives = 63/115 (54%), Gaps = 9/115 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
            RPR+L+E  GQ E     K FIE  K     + H +F GP G GKT+ A+VVAR +  +
Sbjct: 8   FRPRSLDEICGQRELVGVFKKFIENKK-----IPHSIFYGPAGCGKTSFARVVARSMEYD 62

Query: 82  FRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           F    G  + K  +   +L N E+   + + FIDEIHRLS   +E L   ME+++
Sbjct: 63  FYEFDGGNL-KIEEFRKILKNHENALSKPLFFIDEIHRLSKTQQEALLIPMENYR 116


>gi|166031126|ref|ZP_02233955.1| hypothetical protein DORFOR_00811 [Dorea formicigenerans ATCC
           27755]
 gi|166028973|gb|EDR47730.1| hypothetical protein DORFOR_00811 [Dorea formicigenerans ATCC
           27755]
          Length = 439

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/199 (31%), Positives = 90/199 (45%), Gaps = 41/199 (20%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           +N+ QE    S LRP TLEE  GQ       K+   A KA  + L  ++F GPPG GKTT
Sbjct: 10  KNMDQEAPLASRLRPTTLEEVVGQQHIIGKDKLLYRAIKA--DKLSSIIFYGPPGTGKTT 67

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTN-------LEDRDVLFIDEIHRLSIIVE 122
           LA+V+A      F   +  V  K  D+  ++          + + +LF+DEIHR +   +
Sbjct: 68  LAKVIAHTTSAEFTQINATVAGKK-DMEEVVQKAKETLGMYQKKTILFVDEIHRFNKGQQ 126

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI-RLN 181
           + L P +ED                        LI ATT      NP  +  G  I R +
Sbjct: 127 DYLLPFVED--------------------GTIILIGATTE-----NPYFEVNGALISRSS 161

Query: 182 FYEI-----EDLKTIVQRG 195
            +E+     ED+KT+++R 
Sbjct: 162 IFELHPLEKEDIKTLLKRA 180


>gi|239628694|ref|ZP_04671725.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239518840|gb|EEQ58706.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 438

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/125 (36%), Positives = 68/125 (54%), Gaps = 10/125 (8%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           S LRPRTL+E  GQ       K+   A KA  + L  ++F GPPG GKTTLA+V+A    
Sbjct: 20  SRLRPRTLDEVVGQQHIVGVDKLLYRAIKA--DKLGSIIFYGPPGTGKTTLAKVIANTTS 77

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDF 132
            +F+  +  V  K  D+  ++   +D       + +LF+DEIHR +   ++ L P +ED 
Sbjct: 78  ADFKQINATVAGKK-DMEEVVKGAKDNMGMYGRKTILFVDEIHRFNKGQQDYLLPFVEDG 136

Query: 133 QLDLM 137
            L L+
Sbjct: 137 TLILI 141


>gi|227549156|ref|ZP_03979205.1| conserved hypothetical protein [Corynebacterium lipophiloflavum DSM
           44291]
 gi|227078716|gb|EEI16679.1| conserved hypothetical protein [Corynebacterium lipophiloflavum DSM
           44291]
          Length = 107

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 49/78 (62%)

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D++G D+LD   L  + R  GGGPVG+ T++  + E    +E++ EPY+++ G + RT 
Sbjct: 20  VDELGLDRLDRAVLNSLIRGHGGGPVGVSTLAIAVGEEPGTVEEVCEPYLVRAGLMSRTG 79

Query: 315 RGRLLMPIAWQHLGIDIP 332
           RGR+    AW H+G+  P
Sbjct: 80  RGRVATAAAWHHVGVTPP 97


>gi|125973135|ref|YP_001037045.1| recombination factor protein RarA [Clostridium thermocellum ATCC
           27405]
 gi|256003930|ref|ZP_05428916.1| AAA ATPase central domain protein [Clostridium thermocellum DSM
           2360]
 gi|281417327|ref|ZP_06248347.1| AAA ATPase central domain protein [Clostridium thermocellum JW20]
 gi|125713360|gb|ABN51852.1| Recombination protein MgsA [Clostridium thermocellum ATCC 27405]
 gi|255992058|gb|EEU02154.1| AAA ATPase central domain protein [Clostridium thermocellum DSM
           2360]
 gi|281408729|gb|EFB38987.1| AAA ATPase central domain protein [Clostridium thermocellum JW20]
 gi|316940639|gb|ADU74673.1| AAA ATPase central domain protein [Clostridium thermocellum DSM
           1313]
          Length = 432

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 78/146 (53%), Gaps = 14/146 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRTLEEF GQ E     K+     KA  + +  ++  GPPG GKT+LA+++A     N
Sbjct: 12  MRPRTLEEFYGQEEIVGEGKLLNRMIKA--DRISSIILYGPPGTGKTSLARIIANSTKAN 69

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F   +  V A   D+  ++++ ++       R VLFIDEIHR +   ++ L P +ED  +
Sbjct: 70  FEKLNA-VTAGVADIKRIVSDTQNPILNPKGRTVLFIDEIHRFNKSQQDALLPYVEDGTI 128

Query: 135 DLMVG---EGPSARSVKINLSRFTLI 157
            ++VG   E P     K  +SR ++ 
Sbjct: 129 -ILVGATTENPFFEVNKALISRSSVF 153


>gi|304570584|ref|YP_388490.2| recombination factor protein RarA [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 428

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 106/242 (43%), Gaps = 38/242 (15%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  LE F GQ      L+  + A++     L  +LF GPPG GK+T+A ++AR  G  
Sbjct: 32  IRPADLEGFVGQTHLRDRLRALMNASR-----LPSLLFFGPPGCGKSTIALLLARNTGQK 86

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG-- 139
           +   S P   +AG L  L  +L    +L +DE+HR S   ++   P +E  ++ L+    
Sbjct: 87  YIRISAP---EAG-LQQLRKSLAGVRILVLDELHRFSKAQQDFFLPVLESGEVTLLASTT 142

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199
           E PS    +  LSR  +                     +RL      DL T+ +RGA+  
Sbjct: 143 ENPSFSVTRQLLSRMHV---------------------LRLKPLAHSDLLTLARRGAEAQ 181

Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI--DK 257
           G A+ D+    +A  + G  R    L+  V    E    +  T E   AAL  L +  DK
Sbjct: 182 GAALKDDVCEMLATVAHGDARTLLNLVEYVAGLPE----EKQTPEAVKAALPELVMRHDK 237

Query: 258 MG 259
            G
Sbjct: 238 DG 239


>gi|242310186|ref|ZP_04809341.1| recombination factor protein RarA [Helicobacter pullorum MIT
           98-5489]
 gi|239523483|gb|EEQ63349.1| recombination factor protein RarA [Helicobacter pullorum MIT
           98-5489]
          Length = 388

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 64/114 (56%), Gaps = 6/114 (5%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  ++F GQ         F++  K+    + H  F GPPG GKTT A ++A ELG  F
Sbjct: 9   RPKNFQQFIGQKHIFGENAPFMQLLKSGK--IPHSFFFGPPGSGKTTAATLIANELGYPF 66

Query: 83  RSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
            + +     K+ DL  +L N ++   + ++FIDE+HRL+   +E+L P ME+ Q
Sbjct: 67  YNLNATSF-KSEDLRNILKNHQNTLQKPLIFIDEVHRLNKAQQELLLPIMENHQ 119


>gi|294506999|ref|YP_003571057.1| ATPase, AAA family protein [Salinibacter ruber M8]
 gi|294343327|emb|CBH24105.1| ATPase, AAA family protein [Salinibacter ruber M8]
          Length = 456

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/117 (38%), Positives = 66/117 (56%), Gaps = 10/117 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRTL+EF GQ       K+   A +A  + +  VLF GPPG GKTTLA+++AR    +
Sbjct: 23  MRPRTLDEFVGQEHFIGEGKLLRRAIEA--DRVTSVLFCGPPGTGKTTLARIIARTTEAH 80

Query: 82  FRSTSGPVIAKAGDL-------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
           F S +  V++   DL          L + + R +LFIDE+HR +   ++ L P +ED
Sbjct: 81  FTSLNA-VLSGVADLREAVQKAKNRLKHHQTRTILFIDEVHRFNTAQQDALLPHVED 136


>gi|309791858|ref|ZP_07686343.1| AAA ATPase central domain protein [Oscillochloris trichoides DG6]
 gi|308226098|gb|EFO79841.1| AAA ATPase central domain protein [Oscillochloris trichoides DG6]
          Length = 486

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/150 (36%), Positives = 78/150 (52%), Gaps = 17/150 (11%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRTLEE+ GQ       K+   A     + L  ++  GPPG GKTTLA++VA     +
Sbjct: 28  MRPRTLEEYAGQQHVVGEGKLLRRAITG--DQLFSIILWGPPGSGKTTLARIVASSTNAH 85

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F   S  V A   DL A++   +D       R VLFIDEIHR +   ++ + P +ED  +
Sbjct: 86  FTQVSA-VNAGVADLRAVIQEAQDRLGMYQQRTVLFIDEIHRFNKGQQDAVLPYVEDGTI 144

Query: 135 DLMVGEGPSARSVKIN---LSR---FTLIA 158
            +++G      S ++N   LSR   FTL A
Sbjct: 145 -ILIGATTENPSFEVNSALLSRARVFTLQA 173


>gi|153854634|ref|ZP_01995884.1| hypothetical protein DORLON_01879 [Dorea longicatena DSM 13814]
 gi|149752738|gb|EDM62669.1| hypothetical protein DORLON_01879 [Dorea longicatena DSM 13814]
          Length = 439

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 101/223 (45%), Gaps = 51/223 (22%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           +N+ +E    S LRP TLEE  GQ       K+   A KA  + L  V+F GPPG GKTT
Sbjct: 10  QNMEKEAPLASRLRPTTLEEVVGQQHIIGKDKLLYRAIKA--DKLSSVIFYGPPGTGKTT 67

Query: 70  LAQVVARELGVNFR----STSGP-----VIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           LA+V+A      F     +T+G      VI KA ++  +      + +LF+DEIHR +  
Sbjct: 68  LAKVIANTTSAEFTQINATTAGKKDMEEVINKAKEMQGM---YRKKTILFVDEIHRFNKG 124

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI-R 179
            ++ L P +ED                        LI ATT      NP  +  G  + R
Sbjct: 125 QQDYLLPFVED--------------------GTIILIGATTE-----NPYFEVNGALLSR 159

Query: 180 LNFYEI-----EDLKTIVQRGAKLT--GL----AVTDEAACEI 211
            + +E+     ED+KT++ R    T  G+    AV DE A E 
Sbjct: 160 SSIFELQPLAKEDIKTLITRAVYDTVKGMGSYQAVIDEDALEF 202


>gi|229828714|ref|ZP_04454783.1| hypothetical protein GCWU000342_00780 [Shuttleworthia satelles DSM
           14600]
 gi|229793308|gb|EEP29422.1| hypothetical protein GCWU000342_00780 [Shuttleworthia satelles DSM
           14600]
          Length = 447

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/133 (36%), Positives = 67/133 (50%), Gaps = 12/133 (9%)

Query: 8   LSRNVSQEDAD--ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            +RN +QE      S LRP  LEE  GQ       K+   A KA  + L  V+F GPPG 
Sbjct: 6   YARNKNQEHESPLASRLRPTCLEEVVGQEHIIGEDKLLYRAIKA--DKLSSVIFYGPPGT 63

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLS 118
           GKTTLA+V+A     +FR  +     K  D+   +   +D       + +LFIDEIHR +
Sbjct: 64  GKTTLARVIANTTSADFRQINATTAGKK-DMQEAVEAAKDTLGMYGKKTILFIDEIHRFN 122

Query: 119 IIVEEILYPAMED 131
              ++ L P +ED
Sbjct: 123 KGQQDYLLPYVED 135


>gi|283851952|ref|ZP_06369228.1| AAA ATPase central domain protein [Desulfovibrio sp. FW1012B]
 gi|283572676|gb|EFC20660.1| AAA ATPase central domain protein [Desulfovibrio sp. FW1012B]
          Length = 408

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 63/213 (29%), Positives = 100/213 (46%), Gaps = 36/213 (16%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP++L +F GQ    S L+  + A +     L  +L  GPPG GK+TLA ++AR  G  
Sbjct: 15  IRPQSLTDFVGQTHVISRLETMLAAPR-----LPSLLLFGPPGCGKSTLALILARAKGRP 69

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VG 139
           +   S P   +AG LA L   ++ +++L +DE+HR S   ++   P +E  ++ L+    
Sbjct: 70  YVRVSAP---EAG-LATLRELIKGKEILILDELHRFSKAQQDFFLPLLETGEMVLLATTT 125

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199
           E PS    +  LSR  +                     +RL      +L  + +RGAK  
Sbjct: 126 ENPSFSVTRQLLSRLHV---------------------LRLRPLSHGELMLLAERGAKAA 164

Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           GL +  E+   IA+ S G     GR L  + +F
Sbjct: 165 GLDLARESLDAIALLSSGD----GRTLLNLVEF 193


>gi|266621439|ref|ZP_06114374.1| replication-associated recombination protein A [Clostridium
           hathewayi DSM 13479]
 gi|288866879|gb|EFC99177.1| replication-associated recombination protein A [Clostridium
           hathewayi DSM 13479]
          Length = 444

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/143 (34%), Positives = 72/143 (50%), Gaps = 20/143 (13%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD+E  L+          S LRP TL+E  GQ       K+   A KA  + L  V+F G
Sbjct: 12  MDKESPLA----------SRLRPATLDEVVGQQHIIGKDKLLYRAIKA--DKLGSVIFYG 59

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEI 114
           PPG GKTTLA+V+A     +F+  +  V  K  D+  ++    D       + +LF+DEI
Sbjct: 60  PPGTGKTTLAKVIANTTSADFKQINATVAGKK-DMEEIVKEARDSLGMFGRKTILFVDEI 118

Query: 115 HRLSIIVEEILYPAMEDFQLDLM 137
           HR +   ++ L P +ED  L L+
Sbjct: 119 HRFNKGQQDYLLPFVEDGTLTLI 141


>gi|313888444|ref|ZP_07822111.1| ATPase, AAA family [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845473|gb|EFR32867.1| ATPase, AAA family [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 433

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 63/199 (31%), Positives = 94/199 (47%), Gaps = 34/199 (17%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRTLEEF GQ       K      K+  + L  VLF GPPG+GKTTLA+++AR    N
Sbjct: 22  MRPRTLEEFFGQDHIIGEGKYLSRLIKS--DRLTSVLFYGPPGVGKTTLAEIIARTTNKN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F   S  V +   +L  +L   ED         ++FIDEIHR +   ++ L P +E   +
Sbjct: 80  FVKLSA-VTSNLKELREVLAKAEDSMKFDNVSTIVFIDEIHRFNKSQQDALLPFVERGVI 138

Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK--- 189
            L+    E P     +  LSR  +I          +PL+D+          ++ED+    
Sbjct: 139 SLIGATTENPYFEVNRALLSRMQIIN--------LHPLEDK----------DLEDMMYKA 180

Query: 190 -TIVQRGAKLTGLAVTDEA 207
            +  +RG     + +T+EA
Sbjct: 181 LSDKERGLGKKNIVITEEA 199


>gi|167912491|ref|ZP_02499582.1| Holliday junction DNA helicase B [Burkholderia pseudomallei 112]
          Length = 77

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 36/58 (62%), Positives = 43/58 (74%)

Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
          S E+A    LRPR L+E+ GQ +    L++FIEAAK R+EALDHVL  GPPGLGKTTL
Sbjct: 20 SHEEAFERALRPRQLDEYVGQEKVRDQLEIFIEAAKRRSEALDHVLLFGPPGLGKTTL 77


>gi|83814895|ref|YP_445120.1| recombination factor protein RarA [Salinibacter ruber DSM 13855]
 gi|83756289|gb|ABC44402.1| ATPase, AAA family protein [Salinibacter ruber DSM 13855]
          Length = 456

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/117 (38%), Positives = 66/117 (56%), Gaps = 10/117 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRTL+EF GQ       K+   A +A  + +  VLF GPPG GKTTLA+++AR    +
Sbjct: 23  MRPRTLDEFVGQEHFIGEGKLLRRAIEA--DRVTSVLFCGPPGTGKTTLARIIARTTEAH 80

Query: 82  FRSTSGPVIAKAGDL-------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
           F S +  V++   DL          L + + R +LFIDE+HR +   ++ L P +ED
Sbjct: 81  FTSLNA-VLSGVTDLREAIQKAKNRLKHHQTRTILFIDEVHRFNTAQQDALLPHVED 136


>gi|313904153|ref|ZP_07837532.1| AAA ATPase central domain protein [Eubacterium cellulosolvens 6]
 gi|313470955|gb|EFR66278.1| AAA ATPase central domain protein [Eubacterium cellulosolvens 6]
          Length = 488

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 67/134 (50%), Gaps = 10/134 (7%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           E + ++N   E    S +RP TLEE  GQ       ++   A KA  + L  ++F GPPG
Sbjct: 5   EYMATQNKENESPLASRMRPETLEEVVGQEHIIGKGRMLYRAIKA--DKLSSIIFYGPPG 62

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRL 117
            GKTTLA+V+A      F   +     K  D+ A +   ++R        +LFIDEIHR 
Sbjct: 63  TGKTTLARVIANTTSAEFAQMNATTSGKK-DMEAAVKEAQNRRGMYGKKTILFIDEIHRF 121

Query: 118 SIIVEEILYPAMED 131
           +   ++ L P +ED
Sbjct: 122 NKGQQDFLLPYVED 135


>gi|238917273|ref|YP_002930790.1| putative ATPase [Eubacterium eligens ATCC 27750]
 gi|238872633|gb|ACR72343.1| putative ATPase [Eubacterium eligens ATCC 27750]
          Length = 455

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 107/243 (44%), Gaps = 49/243 (20%)

Query: 1   MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           +MD    +  N    ++ +++ LRP TLEE  GQ       K+   A KA  + L  V+F
Sbjct: 15  IMDLFEYMRENNKNNESPLAMRLRPETLEEMVGQSHIVGKDKLLYRAIKA--DKLSSVIF 72

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFID 112
            GPPG GKTTLA+++A      F   +  V  K  D+  ++   +D       + +LF+D
Sbjct: 73  YGPPGTGKTTLARIIANTTSAEFCQVNATVAGKK-DMEEVVAKAKDNLGMYGRKTILFVD 131

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           EIHR +   ++ L P +ED                        LI ATT      NP  +
Sbjct: 132 EIHRFNKGQQDYLLPFVED--------------------GTIILIGATTE-----NPYFE 166

Query: 173 RFG------IPIRLNFYEIEDLKTIVQRGA--KLTGL----AVTDEAACE-IAMRSRGTP 219
             G      I   L   E +D+KTI++R    +  G+    AV D+ A E +A  S G  
Sbjct: 167 VNGALISRSIIFELKPLEKDDIKTIIKRAVYDEKKGMGSYKAVIDDDALEFLADISNGDA 226

Query: 220 RIA 222
           R A
Sbjct: 227 RNA 229


>gi|323486280|ref|ZP_08091606.1| hypothetical protein HMPREF9474_03357 [Clostridium symbiosum
           WAL-14163]
 gi|323693929|ref|ZP_08108116.1| replication-associated recombination protein A [Clostridium
           symbiosum WAL-14673]
 gi|323400390|gb|EGA92762.1| hypothetical protein HMPREF9474_03357 [Clostridium symbiosum
           WAL-14163]
 gi|323502026|gb|EGB17901.1| replication-associated recombination protein A [Clostridium
           symbiosum WAL-14673]
          Length = 440

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 77/146 (52%), Gaps = 12/146 (8%)

Query: 2   MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD    +  N  +++A + S LRP TL+E  GQ       K+   A KA  + L  ++F 
Sbjct: 1   MDLFDYMRSNTMEKEAPLASRLRPATLDEVVGQKHIIGKDKLLYRAIKA--DKLGSIIFY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDE 113
           GPPG GKTTLA+V+A      F+  +  V  K  D+  ++   +D       + +LF+DE
Sbjct: 59  GPPGTGKTTLAKVIAGTTSARFKQLNATVAGKK-DMEEVVQEAKDALGMYGQKTILFVDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLMVG 139
           IHR +   ++ L P +ED  L L++G
Sbjct: 118 IHRFNKSQQDYLLPFVEDGTL-LLIG 142


>gi|329298645|ref|ZP_08255981.1| Holliday junction DNA helicase RuvB [Plautia stali symbiont]
          Length = 62

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 31/56 (55%), Positives = 43/56 (76%)

Query: 274 NFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
            F GGPVG++ ++A + E R+ IED+IEP++IQQG IQRTPRGR+    A++H GI
Sbjct: 3   KFMGGPVGLDNLAAAIGEERETIEDVIEPFLIQQGLIQRTPRGRMATQHAYKHFGI 58


>gi|152993934|ref|YP_001359655.1| recombination factor protein RarA [Sulfurovum sp. NBC37-1]
 gi|151425795|dbj|BAF73298.1| ATPase, AAA family [Sulfurovum sp. NBC37-1]
          Length = 393

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/115 (39%), Positives = 64/115 (55%), Gaps = 12/115 (10%)

Query: 23  RPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           RP+TL+E  GQ         L+  IEA     +AL H+   GPPG GKTTLA+++A +LG
Sbjct: 9   RPKTLDEMVGQRHLLGEEAPLRKLIEA-----DALPHIFLYGPPGCGKTTLARIIATQLG 63

Query: 80  VNFRSTSGPVIAKAGDLAALL---TNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
             F   +   + K  DL  +     N   + ++FIDE+HRLS   +E+L P ME+
Sbjct: 64  RPFYEMNATTL-KIDDLRKIFKEYANALQKPLIFIDEVHRLSKNQQEVLLPFMEN 117


>gi|253580175|ref|ZP_04857442.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848694|gb|EES76657.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 439

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 47/130 (36%), Positives = 66/130 (50%), Gaps = 10/130 (7%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           S+ + QE    S LRP TL+E  GQ        +   A KA  + L  V+F GPPG GKT
Sbjct: 9   SKTLDQESPLASRLRPTTLDEVVGQQHIIGKNTLLYRAIKA--DKLTSVIFYGPPGTGKT 66

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIV 121
           TLA+V+A      F   +  V  K  D+ A++   +        + +LFIDEIHR +   
Sbjct: 67  TLAKVIANTTSAEFTQINATVAGKK-DMEAVVKEAQQNLGMYGKKTILFIDEIHRFNKGQ 125

Query: 122 EEILYPAMED 131
           ++ L P +ED
Sbjct: 126 QDYLLPFVED 135


>gi|225568599|ref|ZP_03777624.1| hypothetical protein CLOHYLEM_04676 [Clostridium hylemonae DSM
           15053]
 gi|225162527|gb|EEG75146.1| hypothetical protein CLOHYLEM_04676 [Clostridium hylemonae DSM
           15053]
          Length = 438

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 69/135 (51%), Gaps = 10/135 (7%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           +N+  E    S LRP TL+E  GQ       K+   A KA  + L  ++F GPPG GKTT
Sbjct: 10  KNMDNEAPLASRLRPATLDEVVGQQHIIGKDKLLYRAIKA--DKLSSIIFYGPPGTGKTT 67

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTN-------LEDRDVLFIDEIHRLSIIVE 122
           LA+V+A      F   +  V  K  D+  ++ +        + R +LF+DEIHR +   +
Sbjct: 68  LAKVIANTTSAEFTQINATVAGKK-DMEEVVKHAKELQGMYQKRTILFVDEIHRFNKGQQ 126

Query: 123 EILYPAMEDFQLDLM 137
           + L P +ED  L L+
Sbjct: 127 DYLLPFVEDGTLILI 141


>gi|291457478|ref|ZP_06596868.1| replication-associated recombination protein A [Bifidobacterium
           breve DSM 20213]
 gi|291381313|gb|EFE88831.1| replication-associated recombination protein A [Bifidobacterium
           breve DSM 20213]
          Length = 459

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 68/217 (31%), Positives = 96/217 (44%), Gaps = 40/217 (18%)

Query: 22  LRPRTLEEFTGQVEACSN----LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +RPRTL+E  GQ +         ++   A+K    A   V+  GPPG+GKTTLA +VA +
Sbjct: 24  MRPRTLDEVIGQTQVLGQGSPLHRLANPASKGSLTAPSSVILFGPPGVGKTTLATIVAGQ 83

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAME 130
            G  F   S  V +   D+  +LT   +R        VLFIDE+HR S   ++ L PA+E
Sbjct: 84  SGRVFEELSA-VTSGVKDVRDVLTRAHERLVSRGQETVLFIDEVHRFSKSQQDALLPAVE 142

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +  +  +    E PS   +K  LSR  +                     ++L   E   L
Sbjct: 143 NRDVTFIGATTENPSFSVIKPLLSRSVV---------------------VKLESLEPNQL 181

Query: 189 KTIVQRG-AKLTGL----AVTDEAACEIAMRSRGTPR 220
             +VQR  A   GL      TDEA  +I   + G  R
Sbjct: 182 TELVQRALADERGLKGEVKATDEAVADIVRMAGGDAR 218


>gi|332981519|ref|YP_004462960.1| AAA ATPase central domain-containing protein [Mahella australiensis
           50-1 BON]
 gi|332699197|gb|AEE96138.1| AAA ATPase central domain protein [Mahella australiensis 50-1 BON]
          Length = 444

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 46/116 (39%), Positives = 63/116 (54%), Gaps = 10/116 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRTLEEF GQ    +  ++   A KA  + L  V+F GPPG GKTTLA+V+A     +
Sbjct: 22  MRPRTLEEFVGQEHIIAPGRMLYRAIKA--DRLSSVIFYGPPGTGKTTLARVIANTTKSH 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAME 130
           F   S  V A   D+  L+   +        R +LFIDEIHR +   ++ L P +E
Sbjct: 80  FEQLSA-VTAGVADVRRLIDEAKQRLGMYGQRTILFIDEIHRFNKAQQDALLPHVE 134


>gi|15611466|ref|NP_223117.1| recombination factor protein RarA [Helicobacter pylori J99]
 gi|4154931|gb|AAD05978.1| putative [Helicobacter pylori J99]
          Length = 391

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 45/116 (38%), Positives = 64/116 (55%), Gaps = 12/116 (10%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG- 79
           LL P++LEEF GQ           +A +++     H  F GPPG+GKT+LAQ++AR L  
Sbjct: 6   LLNPKSLEEFLGQEHLIGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIARSLKR 63

Query: 80  --VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAME 130
             ++F +T      K  DL   L N ++   + V+FIDE HRL+   +E L P ME
Sbjct: 64  PILSFNATD----FKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115


>gi|308184225|ref|YP_003928358.1| recombination factor protein RarA [Helicobacter pylori SJM180]
 gi|308060145|gb|ADO02041.1| recombination factor protein RarA [Helicobacter pylori SJM180]
          Length = 391

 Score = 72.8 bits (177), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 45/117 (38%), Positives = 65/117 (55%), Gaps = 12/117 (10%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           SLL P++LE+F GQ           +A +++     H  F GPPG+GKT+LAQ++AR L 
Sbjct: 5   SLLNPKSLEDFLGQEHLIGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIARSLE 62

Query: 80  ---VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAME 130
              ++F +T      K  DL   L N ++   + V+FIDE HRL+   +E L P ME
Sbjct: 63  RPILSFNATD----FKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115


>gi|329667375|gb|AEB93323.1| recombination factor protein [Lactobacillus johnsonii DPC 6026]
          Length = 420

 Score = 72.8 bits (177), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 114/276 (41%), Gaps = 46/276 (16%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           L+RP+ L +F GQ +  S  K   +  K        +L  GPPG GKT+LAQ++ARE   
Sbjct: 10  LIRPKNLSQFVGQTKLISEGKPLYQIIKNHVPI--SLLLWGPPGTGKTSLAQIIAREYDY 67

Query: 81  NFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG- 139
              + +  V  KA  +  + T      VL IDEIHR++  +++ L P +E+ Q+ L++G 
Sbjct: 68  PLATFNASVDNKAKLMQIINTYPYQSFVLLIDEIHRMTTTLQDYLLPYLENGQI-LLIGA 126

Query: 140 --EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
             E P    V    SR  +            PL D+             D+  ++ R  K
Sbjct: 127 TTENPIMSIVPAVRSRCQIFE--------FEPLDDK-------------DISEVLVRALK 165

Query: 198 ----LTGLAVTDEAACEIAMRSRGTPRIAGRLL-------------RRVRDFAEVAHAKT 240
               L    +  EA   IA  + G  R+A  LL             + V++F +  H   
Sbjct: 166 EVFHLDEKQIDKEAINIIARSADGDLRVALNLLETIHAVNGEEISVKNVKEFVKGQHFAY 225

Query: 241 ITREIADAALLRLAIDKMGFDQLD--LRYLTMIARN 274
             +       L    D M     D  L YLT++ +N
Sbjct: 226 DRKATKHYDYLAAYSDSMAGSDTDAALYYLTVLLKN 261


>gi|197304052|ref|ZP_03169081.1| hypothetical protein RUMLAC_02786 [Ruminococcus lactaris ATCC
           29176]
 gi|197296877|gb|EDY31448.1| hypothetical protein RUMLAC_02786 [Ruminococcus lactaris ATCC
           29176]
          Length = 443

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 46/125 (36%), Positives = 66/125 (52%), Gaps = 10/125 (8%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           S +RP TLEE  GQ       K+   A KA  + L  ++F GPPG GKTTLA+V+A    
Sbjct: 25  SRMRPTTLEEVVGQQHIIGKGKLLYRAIKA--DKLSSLIFYGPPGTGKTTLAKVIANTTS 82

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDF 132
             F+  +  V  K  D+  ++   +D       + +LFIDEIHR +   ++ L P +ED 
Sbjct: 83  AEFKQINATVAGKK-DMEEVVKAAKDLQGMYGKKTILFIDEIHRFNKGQQDYLLPFVEDG 141

Query: 133 QLDLM 137
            L L+
Sbjct: 142 TLILI 146


>gi|315638054|ref|ZP_07893239.1| ATPase [Campylobacter upsaliensis JV21]
 gi|315481902|gb|EFU72521.1| ATPase [Campylobacter upsaliensis JV21]
          Length = 391

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 46/119 (38%), Positives = 65/119 (54%), Gaps = 9/119 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
            RP  L+E  GQ E     K FI   K     L H LF G  G GKT+ A+ VA+E G++
Sbjct: 7   FRPNNLDEILGQYELVEVFKKFIAMQK-----LPHSLFFGVAGSGKTSFARAVAKEFGLD 61

Query: 82  FRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           F    G    K  +L  +L N ++   + ++FIDEIHRLS   +E+L   ME+++L L+
Sbjct: 62  FYEFDGGNF-KLEELRKILENYKNSLYKPLIFIDEIHRLSKTQQEMLLIPMENYRLILI 119


>gi|222824546|ref|YP_002576120.1| ATPase, AAA family protein [Campylobacter lari RM2100]
 gi|222539767|gb|ACM64868.1| ATPase, AAA family protein [Campylobacter lari RM2100]
          Length = 396

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 45/121 (37%), Positives = 68/121 (56%), Gaps = 10/121 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
            RP+TL+E  GQ       K FI+A+K     L H +F GP G GKT+ A+ +A E  ++
Sbjct: 8   FRPKTLDEVLGQENLVEIFKKFIQASK-----LPHSIFFGPAGCGKTSFARAIAYEYKLD 62

Query: 82  FRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138
           F    G    K  +L  +L+N E+   + ++FIDE+HRLS   +E+L   +E+ Q  L +
Sbjct: 63  FYEFDGGNF-KLEELRKILSNYENSLYKPLIFIDEVHRLSKTQQEMLLIPLEN-QKCLFI 120

Query: 139 G 139
           G
Sbjct: 121 G 121


>gi|77918707|ref|YP_356522.1| recombination factor protein RarA/unknown domain fusion protein
           [Pelobacter carbinolicus DSM 2380]
 gi|77544790|gb|ABA88352.1| Recombination protein MgsA [Pelobacter carbinolicus DSM 2380]
          Length = 726

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 84/168 (50%), Gaps = 17/168 (10%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           S +RPRTLEE+ GQ       ++   A   RA+ L  ++F GPPG GKTTLAQV+A    
Sbjct: 17  SRMRPRTLEEYVGQDHILGEGRLLRRAI--RADQLSSLIFYGPPGTGKTTLAQVIANSTA 74

Query: 80  VNFRSTSGPVIAKAGDLAALLTN-------LEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
             F S +  V++   DL   + +        + R +LF+DE+HR +   ++ L P +E  
Sbjct: 75  SRFVSMNA-VLSGVKDLREAIEDARQSQEYYDKRTILFVDEVHRWNKSQQDALLPWVEKG 133

Query: 133 QLDLM--VGEGPSARSVKINLSR---FTLIAATTRV--GLLTNPLQDR 173
            + L+    E P     K  +SR   F L+  T      ++T  LQD+
Sbjct: 134 TIILIGATTENPYFEVNKALVSRSRVFQLLGLTEENLRQIVTQTLQDK 181


>gi|304316707|ref|YP_003851852.1| ATPase AAA [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302778209|gb|ADL68768.1| AAA ATPase central domain protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 444

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 106/239 (44%), Gaps = 43/239 (17%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD       N    +A ++  +RP TL+EF GQ     + K+   A KA  + +  ++F 
Sbjct: 1   MDMFQFAHNNFKHSNAPLADRMRPTTLDEFVGQKHILGHDKLLYRAIKA--DRVRSLIFY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDE 113
           GPPG GKTTLA ++A     +F   +  V +   D+  ++   +D       R +LFIDE
Sbjct: 59  GPPGTGKTTLANIIANTTKSSFEKLNA-VTSGVTDIKKIVNESKDRLSMYGKRTILFIDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLMVG---EGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           IHR +   ++ L P +ED  + +++G   E P    ++  +SR  +            PL
Sbjct: 118 IHRFNKSQQDALLPYVEDGTI-ILIGATTENPYFEVIRPLVSRSMIFELY--------PL 168

Query: 171 QDRFGIPIRLNFYEIEDLKTIV-------QRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
            +             ED+K IV       +RG     + +TD+A   I   S G  R A
Sbjct: 169 SN-------------EDIKEIVLRALNDEKRGLGNEKIKITDDALNHIITYSDGDARAA 214


>gi|291516212|emb|CBK69828.1| Recombination protein MgsA [Bifidobacterium longum subsp. longum
           F8]
          Length = 444

 Score = 72.8 bits (177), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 52/149 (34%), Positives = 76/149 (51%), Gaps = 14/149 (9%)

Query: 22  LRPRTLEEFTGQVEACSN----LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +RPRTL+E  GQ +         ++   A+K    A   V+  GPPG+GKTTLA +VA +
Sbjct: 9   MRPRTLDEVIGQTQVLGQGSPLRRLANPASKGSLTAPSSVILFGPPGVGKTTLATIVAGQ 68

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAME 130
            G  F   S  V +   D+  +LT   +R        VLFIDE+HR S   ++ L PA+E
Sbjct: 69  SGRVFEELSA-VTSGVKDVRDVLTRAHERLVSRGQETVLFIDEVHRFSKSQQDALLPAVE 127

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLI 157
           +  +  +    E PS   +K  LSR  ++
Sbjct: 128 NRDVTFIGATTENPSFSIIKPLLSRSVVV 156


>gi|227546758|ref|ZP_03976807.1| recombination ATPase [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|227212720|gb|EEI80601.1| recombination ATPase [Bifidobacterium longum subsp. infantis ATCC
           55813]
          Length = 459

 Score = 72.8 bits (177), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 52/149 (34%), Positives = 76/149 (51%), Gaps = 14/149 (9%)

Query: 22  LRPRTLEEFTGQVEACSN----LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +RPRTL+E  GQ +         ++   A+K    A   V+  GPPG+GKTTLA +VA +
Sbjct: 24  MRPRTLDEVIGQTQVLGQGSPLRRLANPASKGSLTAPSSVILFGPPGVGKTTLATIVAGQ 83

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAME 130
            G  F   S  V +   D+  +LT   +R        VLFIDE+HR S   ++ L PA+E
Sbjct: 84  SGRVFEELSA-VTSGVKDVRDVLTRAHERLVSRGRETVLFIDEVHRFSKSQQDALLPAVE 142

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLI 157
           +  +  +    E PS   +K  LSR  ++
Sbjct: 143 NRDVTFIGATTENPSFSIIKPLLSRSVVV 171


>gi|317481683|ref|ZP_07940716.1| ATPase [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916862|gb|EFV38251.1| ATPase [Bifidobacterium sp. 12_1_47BFAA]
          Length = 459

 Score = 72.8 bits (177), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 52/149 (34%), Positives = 76/149 (51%), Gaps = 14/149 (9%)

Query: 22  LRPRTLEEFTGQVEACSN----LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +RPRTL+E  GQ +         ++   A+K    A   V+  GPPG+GKTTLA +VA +
Sbjct: 24  MRPRTLDEVIGQTQVLGQGSPLRRLANPASKGSLTAPSSVILFGPPGVGKTTLATIVAGQ 83

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAME 130
            G  F   S  V +   D+  +LT   +R        VLFIDE+HR S   ++ L PA+E
Sbjct: 84  SGRVFEELSA-VTSGVKDVRDVLTRAHERLVSRGQETVLFIDEVHRFSKSQQDALLPAVE 142

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLI 157
           +  +  +    E PS   +K  LSR  ++
Sbjct: 143 NRDVTFIGATTENPSFSIIKPLLSRSVVV 171


>gi|224437384|ref|ZP_03658355.1| recombination factor protein RarA [Helicobacter cinaedi CCUG 18818]
          Length = 415

 Score = 72.4 bits (176), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 64/116 (55%), Gaps = 6/116 (5%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +LLRP +L++F  Q    +      +  K  A  L H  F GPPG GKTTLA ++A+EL 
Sbjct: 6   ALLRPESLQDFIAQEHIIAPDTPLFKMLKHNA--LSHCFFYGPPGSGKTTLAALIAKELN 63

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDF 132
             F S +     K  +L   + + E+   + ++FIDE+HRL+   +E+L P ME +
Sbjct: 64  KPFMSYNATSF-KIEELRQFVKSYENTLFQPIIFIDEVHRLTRTQQEVLLPIMESY 118


>gi|213691612|ref|YP_002322198.1| AAA ATPase, central domain protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213523073|gb|ACJ51820.1| AAA ATPase, central domain protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320457699|dbj|BAJ68320.1| recombination factor protein RarA [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 465

 Score = 72.4 bits (176), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 52/149 (34%), Positives = 76/149 (51%), Gaps = 14/149 (9%)

Query: 22  LRPRTLEEFTGQVEACSN----LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +RPRTL+E  GQ +         ++   A+K    A   V+  GPPG+GKTTLA +VA +
Sbjct: 24  MRPRTLDEVIGQTQVLGQGSPLRRLANPASKGSLTAPSSVILFGPPGVGKTTLATIVAGQ 83

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAME 130
            G  F   S  V +   D+  +LT   +R        VLFIDE+HR S   ++ L PA+E
Sbjct: 84  SGRVFEELSA-VTSGVKDVRDVLTRAHERLVSRGQETVLFIDEVHRFSKSQQDALLPAVE 142

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLI 157
           +  +  +    E PS   +K  LSR  ++
Sbjct: 143 NRDVTFIGATTENPSFSIIKPLLSRSVVV 171


>gi|239620734|ref|ZP_04663765.1| recombination factor protein RarA [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|312132345|ref|YP_003999684.1| atpase for holliday junction resolvase [Bifidobacterium longum
           subsp. longum BBMN68]
 gi|322689648|ref|YP_004209382.1| recombination factor protein RarA [Bifidobacterium longum subsp.
           infantis 157F]
 gi|322691609|ref|YP_004221179.1| recombination factor protein RarA [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|239516310|gb|EEQ56177.1| recombination factor protein RarA [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|311773948|gb|ADQ03436.1| ATPase for Holliday junction resolvase [Bifidobacterium longum
           subsp. longum BBMN68]
 gi|320456465|dbj|BAJ67087.1| recombination factor protein RarA [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320460984|dbj|BAJ71604.1| recombination factor protein RarA [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 459

 Score = 72.4 bits (176), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 52/149 (34%), Positives = 76/149 (51%), Gaps = 14/149 (9%)

Query: 22  LRPRTLEEFTGQVEACSN----LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +RPRTL+E  GQ +         ++   A+K    A   V+  GPPG+GKTTLA +VA +
Sbjct: 24  MRPRTLDEVIGQTQVLGQGSPLRRLANPASKGSLTAPSSVILFGPPGVGKTTLATIVAGQ 83

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAME 130
            G  F   S  V +   D+  +LT   +R        VLFIDE+HR S   ++ L PA+E
Sbjct: 84  SGRVFEELSA-VTSGVKDVRDVLTRAHERLVSRGQETVLFIDEVHRFSKSQQDALLPAVE 142

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLI 157
           +  +  +    E PS   +K  LSR  ++
Sbjct: 143 NRDVTFIGATTENPSFSIIKPLLSRSVVV 171


>gi|189438904|ref|YP_001953985.1| recombination factor protein RarA [Bifidobacterium longum DJO10A]
 gi|32700050|gb|AAP86675.1| putative GTP-binding protein [Bifidobacterium longum subsp.
           infantis]
 gi|189427339|gb|ACD97487.1| ATPase for Holliday junction resolvase [Bifidobacterium longum
           DJO10A]
          Length = 459

 Score = 72.4 bits (176), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 52/149 (34%), Positives = 76/149 (51%), Gaps = 14/149 (9%)

Query: 22  LRPRTLEEFTGQVEACSN----LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +RPRTL+E  GQ +         ++   A+K    A   V+  GPPG+GKTTLA +VA +
Sbjct: 24  MRPRTLDEVIGQTQVLGQGSPLRRLANPASKGSLTAPSSVILFGPPGVGKTTLATIVAGQ 83

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAME 130
            G  F   S  V +   D+  +LT   +R        VLFIDE+HR S   ++ L PA+E
Sbjct: 84  SGRVFEELSA-VTSGVKDVRDVLTRAHERLVSRGQETVLFIDEVHRFSKSQQDALLPAVE 142

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLI 157
           +  +  +    E PS   +K  LSR  ++
Sbjct: 143 NRDVTFIGATTENPSFSIIKPLLSRSVVV 171


>gi|296133419|ref|YP_003640666.1| AAA ATPase central domain protein [Thermincola sp. JR]
 gi|296031997|gb|ADG82765.1| AAA ATPase central domain protein [Thermincola potens JR]
          Length = 445

 Score = 72.4 bits (176), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 49/138 (35%), Positives = 77/138 (55%), Gaps = 11/138 (7%)

Query: 2   MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD   L  +N  +++A +++ +RPRTL+EF GQ +     K+   A +A  + L  V+F 
Sbjct: 1   MDLFELNRQNQLKKEAPLAVRMRPRTLDEFVGQEQIVGPGKLLRRAIEA--DQLSSVIFY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDE 113
           GPPG GKTTLA+V+A      F   +  V +   +L  ++ N ++       R +LFIDE
Sbjct: 59  GPPGTGKTTLAKVIANTTKAFFVQVNA-VTSGVAELREVIQNAKERLGMYGQRTILFIDE 117

Query: 114 IHRLSIIVEEILYPAMED 131
           IHR +   ++ L P +ED
Sbjct: 118 IHRFNKSQQDALLPYVED 135


>gi|225027995|ref|ZP_03717187.1| hypothetical protein EUBHAL_02264 [Eubacterium hallii DSM 3353]
 gi|224954709|gb|EEG35918.1| hypothetical protein EUBHAL_02264 [Eubacterium hallii DSM 3353]
          Length = 445

 Score = 72.4 bits (176), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 68/235 (28%), Positives = 110/235 (46%), Gaps = 35/235 (14%)

Query: 2   MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD    +S    +E++ +++ +RP+ L+E  GQ       K+   A KA  + +  ++F 
Sbjct: 5   MDLFEYMSMQRKKEESPLAVRMRPKNLDEVAGQQHIIGKDKLLYRAIKA--DKISSLIFY 62

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDE 113
           GPPG GKTTLA+V+A     NF   +     K  D+   ++  +D       R +LFIDE
Sbjct: 63  GPPGTGKTTLAKVIANTTSANFVQMNATTSGKK-DMEQAVSQAKDAFGMYGKRTILFIDE 121

Query: 114 IHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN---LSRFTLIAATTRVGLLTNPL 170
           IHR +   ++ L P +ED  + +++G        ++N   LSR  +            PL
Sbjct: 122 IHRFNKAQQDYLLPFVEDGTV-ILIGATTENPYFEVNSALLSRSQI--------FHLEPL 172

Query: 171 QDRFGIPIRLNFYEIEDLKTIV---QRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
            +        + Y +  +KT V   +RG    G  +T+EAA  IA  + G  R A
Sbjct: 173 AES-------DIYRL--VKTAVEDNERGMGAYGAVITEEAARFIAEMAGGDARRA 218


>gi|210134616|ref|YP_002301055.1| recombination factor protein RarA [Helicobacter pylori P12]
 gi|210132584|gb|ACJ07575.1| recombination factor protein [Helicobacter pylori P12]
          Length = 391

 Score = 72.4 bits (176), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 65/117 (55%), Gaps = 12/117 (10%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           SLL P++LE+F GQ           +A +++     H  F GPPG+GKT+LAQ++AR L 
Sbjct: 5   SLLNPKSLEDFLGQEHLIGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIARSLE 62

Query: 80  ---VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAME 130
              ++F +T      K  DL   L N ++   + ++FIDE HRL+   +E L P ME
Sbjct: 63  RPILSFNATD----FKLEDLRLKLKNYQNTLLKPIVFIDETHRLNKTQQEFLLPIME 115


>gi|23464657|ref|NP_695260.1| recombination factor protein RarA [Bifidobacterium longum NCC2705]
 gi|23325217|gb|AAN23896.1| widely conserved hypothetical protein with possible helicase and
           ATP binding domains [Bifidobacterium longum NCC2705]
          Length = 459

 Score = 72.4 bits (176), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 52/149 (34%), Positives = 76/149 (51%), Gaps = 14/149 (9%)

Query: 22  LRPRTLEEFTGQVEACSN----LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +RPRTL+E  GQ +         ++   A+K    A   V+  GPPG+GKTTLA +VA +
Sbjct: 24  MRPRTLDEVIGQTQVLGQGSPLRRLANPASKGSLTAPSSVILFGPPGVGKTTLATIVAGQ 83

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAME 130
            G  F   S  V +   D+  +LT   +R        VLFIDE+HR S   ++ L PA+E
Sbjct: 84  SGRVFEELSA-VTSGVKDVRDVLTRAHERLVSRGRETVLFIDEVHRFSKSQQDALLPAVE 142

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLI 157
           +  +  +    E PS   +K  LSR  ++
Sbjct: 143 NRDVTFIGATTENPSFSIIKPLLSRSVVV 171


>gi|296454576|ref|YP_003661719.1| AAA ATPase [Bifidobacterium longum subsp. longum JDM301]
 gi|296184007|gb|ADH00889.1| AAA ATPase, central domain protein [Bifidobacterium longum subsp.
           longum JDM301]
          Length = 459

 Score = 72.4 bits (176), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 52/149 (34%), Positives = 76/149 (51%), Gaps = 14/149 (9%)

Query: 22  LRPRTLEEFTGQVEACSN----LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +RPRTL+E  GQ +         ++   A+K    A   V+  GPPG+GKTTLA +VA +
Sbjct: 24  MRPRTLDEVIGQTQVLGQGSPLRRLANPASKGSLTAPSSVILFGPPGVGKTTLATIVAGQ 83

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAME 130
            G  F   S  V +   D+  +LT   +R        VLFIDE+HR S   ++ L PA+E
Sbjct: 84  SGRVFEELSA-VTSGVKDVRDVLTRAHERLVSRGQETVLFIDEVHRFSKSQQDALLPAVE 142

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLI 157
           +  +  +    E PS   +K  LSR  ++
Sbjct: 143 NRDVTFIGATTENPSFSIIKPLLSRSVVV 171


>gi|46190307|ref|ZP_00206422.1| COG2256: ATPase related to the helicase subunit of the Holliday
           junction resolvase [Bifidobacterium longum DJO10A]
          Length = 436

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 52/149 (34%), Positives = 76/149 (51%), Gaps = 14/149 (9%)

Query: 22  LRPRTLEEFTGQVEACSN----LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +RPRTL+E  GQ +         ++   A+K    A   V+  GPPG+GKTTLA +VA +
Sbjct: 1   MRPRTLDEVIGQTQVLGQGSPLRRLANPASKGSLTAPSSVILFGPPGVGKTTLATIVAGQ 60

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAME 130
            G  F   S  V +   D+  +LT   +R        VLFIDE+HR S   ++ L PA+E
Sbjct: 61  SGRVFEELSA-VTSGVKDVRDVLTRAHERLVSRGQETVLFIDEVHRFSKSQQDALLPAVE 119

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLI 157
           +  +  +    E PS   +K  LSR  ++
Sbjct: 120 NRDVTFIGATTENPSFSIIKPLLSRSVVV 148


>gi|291550085|emb|CBL26347.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [Ruminococcus torques L2-14]
          Length = 438

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 47/134 (35%), Positives = 69/134 (51%), Gaps = 10/134 (7%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           N  +E    S +RP TL+E  GQ       K+   A KA  + L  ++F GPPG GKTTL
Sbjct: 11  NKEKESPLASRMRPVTLDEVVGQKHIIGKDKLLYRAIKA--DKLSSLIFYGPPGTGKTTL 68

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEE 123
           A+V+A      F+  +  V  K  D+  ++   +D       + +LFIDEIHR +   ++
Sbjct: 69  AKVIAHTTSAEFKQINATVAGKK-DMEEVVKEAKDLQGMYGKKTILFIDEIHRFNKGQQD 127

Query: 124 ILYPAMEDFQLDLM 137
            L P +ED  L L+
Sbjct: 128 YLLPFVEDGTLILI 141


>gi|57505824|ref|ZP_00371749.1| ATPase, AAA family [Campylobacter upsaliensis RM3195]
 gi|57015854|gb|EAL52643.1| ATPase, AAA family [Campylobacter upsaliensis RM3195]
          Length = 391

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 46/119 (38%), Positives = 65/119 (54%), Gaps = 9/119 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
            RP  L+E  GQ E     K FI   K     L H LF G  G GKT+ A+ VA+E G++
Sbjct: 7   FRPNNLDEILGQYELVEVFKKFIAMQK-----LPHSLFFGVAGSGKTSFARSVAKEFGLD 61

Query: 82  FRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           F    G    K  +L  +L N ++   + ++FIDEIHRLS   +E+L   ME+++L L+
Sbjct: 62  FYEFDGGNF-KLEELRKILENYKNSLYKPLIFIDEIHRLSKTQQEMLLIPMENYRLILI 119


>gi|226323883|ref|ZP_03799401.1| hypothetical protein COPCOM_01658 [Coprococcus comes ATCC 27758]
 gi|225207432|gb|EEG89786.1| hypothetical protein COPCOM_01658 [Coprococcus comes ATCC 27758]
          Length = 450

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/121 (38%), Positives = 62/121 (51%), Gaps = 14/121 (11%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           S LRP TL+E  GQ       K+   A KA  + L  V+F GPPG GKTTLA+V+A    
Sbjct: 31  SRLRPTTLDEVVGQQHIIGKDKLLYRAIKA--DKLSSVIFYGPPGTGKTTLAKVIANTTS 88

Query: 80  VNFRSTSGP---------VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
             F   +           V+ KA +L  +    + R +LFIDEIHR +   ++ L P +E
Sbjct: 89  AEFTQINATVAGKKDMEEVVNKAKELKGM---YQKRTILFIDEIHRFNKGQQDYLLPFVE 145

Query: 131 D 131
           D
Sbjct: 146 D 146


>gi|323704141|ref|ZP_08115720.1| AAA ATPase central domain protein [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323536207|gb|EGB25979.1| AAA ATPase central domain protein [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 442

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 99/218 (45%), Gaps = 42/218 (19%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP TL+EF GQ     + K+   A KA  + +  ++F GPPG GKTTLA ++A     +
Sbjct: 22  MRPTTLDEFVGQKHILGHDKLLYRAIKA--DKVRSLIFYGPPGTGKTTLANIIANTTKSS 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F   +  V +   D+  ++   +D       R +LF+DEIHR +   ++ L P +ED  +
Sbjct: 80  FEKLNA-VTSGVTDIKKIVNESKDRLSMYGKRTILFVDEIHRFNKSQQDALLPYVEDGTI 138

Query: 135 DLMVG---EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
            +++G   E P    ++  +SR  +            PL D             +D++ I
Sbjct: 139 -ILIGATTENPYFEVIRPLVSRSMIFELY--------PLSD-------------DDIREI 176

Query: 192 V-------QRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
           V       +RG     + VTD+A   I   S G  R A
Sbjct: 177 VLRALNDEKRGLGNEKIKVTDDALNHIIAYSDGDARTA 214


>gi|219849982|ref|YP_002464415.1| recombination factor protein RarA [Chloroflexus aggregans DSM 9485]
 gi|219544241|gb|ACL25979.1| AAA ATPase central domain protein [Chloroflexus aggregans DSM 9485]
          Length = 485

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/167 (35%), Positives = 86/167 (51%), Gaps = 19/167 (11%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRTL+EF GQ       K+   A     + L  ++  GPPG GKTTLAQ++A     +
Sbjct: 29  MRPRTLDEFVGQTHIIGEGKLLRRAIAN--DQLFSLILWGPPGSGKTTLAQIIANSTNAH 86

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F   S  V A   DL  ++   +D       R V+FIDEIHR +   ++ + P +ED  +
Sbjct: 87  FEPLSA-VSAGVNDLRRVVQEAKDRLGMFQQRTVVFIDEIHRFNKSQQDAILPYVEDGTI 145

Query: 135 DLMVGEGPSARSVKIN---LSR---FTLIAAT-TRVGLLTN-PLQDR 173
            +++G      S ++N   LSR   FTL A T   +G+L +  L DR
Sbjct: 146 -ILIGATTENPSFEVNAALLSRARVFTLEALTDEEIGILIDRALSDR 191


>gi|32267139|ref|NP_861171.1| recombination factor protein RarA [Helicobacter hepaticus ATCC
           51449]
 gi|32263192|gb|AAP78237.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
          Length = 411

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/117 (36%), Positives = 65/117 (55%), Gaps = 12/117 (10%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG- 79
           LLRP +L++F GQ    +      +  +    A  H  F GPPG GKTTLA+++A+EL  
Sbjct: 7   LLRPTSLQDFIGQEHIIAPHTPLFKMLQHHTIA--HCFFYGPPGSGKTTLAKLIAKELNK 64

Query: 80  --VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMED 131
              NF +T+     K  +L   + N E    + ++FIDE+HRL+ + +E+L P ME 
Sbjct: 65  PFANFNATT----FKIEELRKFIKNYEGGLYQPLIFIDEVHRLNTLQQEVLLPIMES 117


>gi|227495470|ref|ZP_03925786.1| crossover junction endodeoxyribonuclease ATPase [Actinomyces
           coleocanis DSM 15436]
 gi|226831017|gb|EEH63400.1| crossover junction endodeoxyribonuclease ATPase [Actinomyces
           coleocanis DSM 15436]
          Length = 444

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/183 (32%), Positives = 93/183 (50%), Gaps = 25/183 (13%)

Query: 5   EGLLSRNVSQEDADISL---LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVL 58
           E  ++  V++ +A   L   +RP T+EE  GQ   +   S L+  +E A   A+A+  V+
Sbjct: 5   ESSVTPAVAESNAHAPLAARMRPTTVEELVGQQHLLTPGSPLRRLLEPADP-AKAVSSVI 63

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFI 111
             GPPG+GKTTLA +VAR  G +F   S  V +   ++  +++  +          +LFI
Sbjct: 64  LWGPPGVGKTTLAYLVARSSGRHFAEVSA-VSSGVKEVRDVISEAKRHLATDGKETILFI 122

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVG--EGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+HR S   ++ L PA+E+  + L+    E PS   +   LSR  L        L  NP
Sbjct: 123 DEVHRFSKSQQDSLLPAVENRWVTLIAATTENPSFSVISPLLSRSIL--------LTLNP 174

Query: 170 LQD 172
           L+D
Sbjct: 175 LED 177


>gi|167768575|ref|ZP_02440628.1| hypothetical protein CLOSS21_03134 [Clostridium sp. SS2/1]
 gi|317497939|ref|ZP_07956247.1| ATPase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167710099|gb|EDS20678.1| hypothetical protein CLOSS21_03134 [Clostridium sp. SS2/1]
 gi|291560535|emb|CBL39335.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [butyrate-producing bacterium SSC/2]
 gi|316894772|gb|EFV16946.1| ATPase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 438

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 97/220 (44%), Gaps = 46/220 (20%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP TL+E  GQ       K+   A KA  + +  ++F GPPG GKTTLA+V+A     N
Sbjct: 22  MRPATLDEVVGQEHIIGKDKLLYRAIKA--DKISSIIFYGPPGTGKTTLAKVIANTTKAN 79

Query: 82  F----RSTSGP--VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F     +TSG   +     D    L   + + +LFIDEIHR +   ++ L P +ED    
Sbjct: 80  FVQMNATTSGKKDMQEAVADAKESLGMYQKKTILFIDEIHRFNKAQQDYLLPFVED---- 135

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP-LQDRFGIPIRLNFYEI-----EDLK 189
                               LI ATT      NP  +    +  R N +E+     ED+K
Sbjct: 136 ----------------GTIILIGATTE-----NPYFEVNQALISRSNVFELHSLDKEDIK 174

Query: 190 TIV-------QRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
            ++       ++G  + G  +TD+A   ++  + G  R A
Sbjct: 175 KLIVRAITDDEKGMGIYGATITDDALDFLSDMAEGDARSA 214


>gi|10198155|gb|AAG15220.1|AF288461_6 unknown [Chloroflexus aurantiacus]
          Length = 377

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 108/237 (45%), Gaps = 26/237 (10%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRTLEEF GQ       K+   A     + L  ++  GPPG GKTTLAQ++A     +
Sbjct: 29  MRPRTLEEFVGQHHLVGEGKLLRRAIAN--DQLFSLILWGPPGSGKTTLAQIIAHSTKAH 86

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F   S  V A   DL  ++   +D       R V+FIDEIHR +   ++ + P +ED  +
Sbjct: 87  FEPISA-VSAGVNDLRRVVQEAQDRLGMFQQRTVVFIDEIHRFNKSQQDAILPYVEDGTI 145

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE----DLKT 190
            +++G      S ++N    + + +  RV  L     +  G+ I     + E    DLK 
Sbjct: 146 -ILIGATTENPSFEVN----SALLSRARVFKLEALTDEEIGVLIDRALTDRERGLGDLKI 200

Query: 191 IVQRGAK------LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           ++ R A+        G A T   A E A RS+  P I    L  V D  +   ++ +
Sbjct: 201 MLARDARDYLVNMANGDARTALNALEAAARSK-PPAIGETRLITVDDIRDALQSRAV 256


>gi|302384865|ref|YP_003820687.1| ATPase AAA [Clostridium saccharolyticum WM1]
 gi|302195493|gb|ADL03064.1| AAA ATPase central domain protein [Clostridium saccharolyticum WM1]
          Length = 439

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 67/125 (53%), Gaps = 10/125 (8%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           S LRP +L+E  GQ       K+   A KA  + L  V+F GPPG GKTTLA+V+A    
Sbjct: 20  SRLRPASLDEVVGQQHIIGRDKLLYRAIKA--DKLGSVIFYGPPGTGKTTLARVIANTTS 77

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDF 132
            +F+  +  V  K  D+  ++   +D       + +LF+DEIHR +   ++ L P +ED 
Sbjct: 78  ADFKQINATVAGKK-DMEEIVKEAKDSLGMYGKKTILFVDEIHRFNKGQQDYLLPFVEDG 136

Query: 133 QLDLM 137
            L L+
Sbjct: 137 TLILI 141


>gi|118580657|ref|YP_901907.1| recombination factor protein RarA [Pelobacter propionicus DSM 2379]
 gi|118503367|gb|ABK99849.1| Recombination protein MgsA [Pelobacter propionicus DSM 2379]
          Length = 448

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 75/263 (28%), Positives = 119/263 (45%), Gaps = 48/263 (18%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL EFTGQ         L+  IE      + L  ++F GPPG GKTTLA V+ARE 
Sbjct: 31  MRPRTLTEFTGQEHLVGEDRILRRMIET-----DTLSSLIFWGPPGCGKTTLAHVIARET 85

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDF 132
             +F   S  +++   ++  +    E       R +LF+DEIHR +   ++   P +E  
Sbjct: 86  RAHFIFFSA-ILSGIKEIREIFREAEGVASRGRRTILFVDEIHRFNKSQQDAFLPYVEK- 143

Query: 133 QLDLMVG---EGPSARSVKINLSRFTLIA-----ATTRVGLLTNPLQDRFGIPIRLNFYE 184
            +  M+G   E PS   +   LSR  ++       +T  GL+   L DR           
Sbjct: 144 GVVTMIGATTENPSFEVIAPLLSRCRVLTLKQLEPSTIAGLIGQALADR----------- 192

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
                   +RG    GL +++E    ++ ++ G  R+A   L  +   A +A  + I+ E
Sbjct: 193 --------ERGLGELGLDISEEGLDFLSRQAGGDARVA---LNTLEVAAGLARERLISLE 241

Query: 245 IADAALLRLAI--DKMGFDQLDL 265
               AL + A+  DK G +  ++
Sbjct: 242 TVQEALQKKALLYDKRGEEHYNV 264


>gi|158337198|ref|YP_001518373.1| recombination factor protein RarA/unknown domain fusion protein
           [Acaryochloris marina MBIC11017]
 gi|158307439|gb|ABW29056.1| ATPase, AAA family protein [Acaryochloris marina MBIC11017]
          Length = 742

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/117 (35%), Positives = 67/117 (57%), Gaps = 10/117 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPRTL+EF GQ E     ++   A +A  + L  ++F GPPG GKTTLAQ++A     +
Sbjct: 22  LRPRTLDEFVGQDEIVGPGRLLRRAIQA--DQLSSLIFYGPPGTGKTTLAQIIANTTQAH 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131
           F + +  V+A   D+ + +   +D       R +LF+DE+HR +   ++ L P +E+
Sbjct: 80  FLALNA-VLAGIKDIRSSVDEAQDRRGQYGQRTILFVDEVHRFNKAQQDALLPWVEN 135


>gi|325263700|ref|ZP_08130433.1| ATPase, AAA family [Clostridium sp. D5]
 gi|324030738|gb|EGB92020.1| ATPase, AAA family [Clostridium sp. D5]
          Length = 438

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 85/187 (45%), Gaps = 39/187 (20%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           S +RP +LEE  GQ       K+   A KA  + L  ++F GPPG GKTTLA+V+A    
Sbjct: 20  SRMRPSSLEEVVGQQHIIGRDKLLYRAIKA--DKLGSLIFYGPPGTGKTTLAKVIANTTS 77

Query: 80  VNFRSTSGPVIAK------AGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             F+  +  +  K            LL   + + +LFIDEIHR +   ++ L P +ED  
Sbjct: 78  AEFKQINATIAGKKDMEEVVKGAKELLGMYQKKTILFIDEIHRFNKGQQDYLLPYVED-- 135

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI-RLNFYEI-----ED 187
                                TLI ATT      NP  +  G  + R + +E+     ED
Sbjct: 136 ------------------GTITLIGATTE-----NPYFEVNGALLSRSSVFELKSLSRED 172

Query: 188 LKTIVQR 194
           +KT+++R
Sbjct: 173 VKTLLKR 179


>gi|163846016|ref|YP_001634060.1| recombination factor protein RarA [Chloroflexus aurantiacus
           J-10-fl]
 gi|222523744|ref|YP_002568214.1| recombination factor protein RarA [Chloroflexus sp. Y-400-fl]
 gi|163667305|gb|ABY33671.1| AAA ATPase central domain protein [Chloroflexus aurantiacus
           J-10-fl]
 gi|222447623|gb|ACM51889.1| AAA ATPase central domain protein [Chloroflexus sp. Y-400-fl]
          Length = 497

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/212 (31%), Positives = 99/212 (46%), Gaps = 25/212 (11%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRTLEEF GQ       K+   A     + L  ++  GPPG GKTTLAQ++A     +
Sbjct: 29  MRPRTLEEFVGQHHLVGEGKLLRRAIAN--DQLFSLILWGPPGSGKTTLAQIIAHSTKAH 86

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F   S  V A   DL  ++   +D       R V+FIDEIHR +   ++ + P +ED  +
Sbjct: 87  FEPISA-VSAGVNDLRRVVQEAQDRLGMFQQRTVVFIDEIHRFNKSQQDAILPYVEDGTI 145

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE----DLKT 190
            +++G      S ++N    + + +  RV  L     +  G+ I     + E    DLK 
Sbjct: 146 -ILIGATTENPSFEVN----SALLSRARVFKLEALTDEEIGVLIDRALTDRERGLGDLKI 200

Query: 191 IVQRGAK------LTGLAVTDEAACEIAMRSR 216
           ++ R A+        G A T   A E A RS+
Sbjct: 201 MLARDARDYLVNMANGDARTALNALEAAARSK 232


>gi|319955815|ref|YP_004167078.1| recombination protein mgsa [Nitratifractor salsuginis DSM 16511]
 gi|319418219|gb|ADV45329.1| Recombination protein MgsA [Nitratifractor salsuginis DSM 16511]
          Length = 396

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/120 (38%), Positives = 68/120 (56%), Gaps = 7/120 (5%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+TL+E  GQ    +    F +  +   +AL H LF GPPG GKTTL +++A++L   F
Sbjct: 9   RPQTLDEMVGQEHLLAPEAPFRKLVEK--DALPHSLFFGPPGCGKTTLTRILAKKLDRPF 66

Query: 83  RSTSGPVIAKAGDLAALL---TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
              +   + K  +L  L     N   + ++FIDE+HRLS   +E+L P ME+ Q  L+VG
Sbjct: 67  HEFNATTL-KIDELRQLFKKYANALQKPLVFIDEVHRLSKTQQEVLLPYMEE-QRALIVG 124


>gi|225352769|ref|ZP_03743792.1| hypothetical protein BIFPSEUDO_04399 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225156376|gb|EEG69945.1| hypothetical protein BIFPSEUDO_04399 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 458

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 98/217 (45%), Gaps = 40/217 (18%)

Query: 22  LRPRTLEEFTGQVEACSN----LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +RP +++E  GQ           ++   A+K    A   ++  GPPG+GKTTLA +VA++
Sbjct: 23  MRPSSVDEVVGQSRVLGQGSPLRRLANPASKGSLTAPSSIILFGPPGVGKTTLAYIVAKQ 82

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAME 130
            G  F   S  V +   D+  +L    DR        VLFIDE+HR S   ++ L P++E
Sbjct: 83  SGRVFEELSA-VTSGVKDVRDVLRRAHDRLVAEGKETVLFIDEVHRFSKSQQDALLPSVE 141

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT--NPLQDRFGIPIRLNFYEIEDL 188
           +  +                    T IAATT     +   PL  R  + ++L   E +DL
Sbjct: 142 NRDV--------------------TFIAATTENPSFSIIKPLLSR-SVVVKLESLEPDDL 180

Query: 189 KTIVQRGAK-----LTGLAVTDEAACEIAMRSRGTPR 220
           KT+++R  +        + + DEA  EI   + G  R
Sbjct: 181 KTLIKRAIESERGLKNEVKINDEAVDEIVRMAGGDAR 217


>gi|237751577|ref|ZP_04582057.1| recombination factor protein RarA [Helicobacter bilis ATCC 43879]
 gi|229372943|gb|EEO23334.1| recombination factor protein RarA [Helicobacter bilis ATCC 43879]
          Length = 402

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/119 (35%), Positives = 70/119 (58%), Gaps = 7/119 (5%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75
            RP TLE F GQ    +    L++ IE     +  L ++LF GPPG GKT+LA ++A   
Sbjct: 8   FRPTTLENFIGQKHLLAQDAPLRIIIEKNIQDSNMLPNLLFFGPPGSGKTSLAHIIATLS 67

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           ++  ++F +T+  + +   +L +L  +  ++ +LFIDE+HRL+I  +E L P +E  Q+
Sbjct: 68  KKTFLSFNATNFKLDSLKKEL-SLYEHTMNKPLLFIDEVHRLNIAQQEFLLPILEKGQV 125


>gi|298529786|ref|ZP_07017189.1| AAA ATPase central domain protein [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298511222|gb|EFI35125.1| AAA ATPase central domain protein [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 400

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 98/213 (46%), Gaps = 32/213 (15%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+++E+F GQ    + L+     A  +++ L   LF GPPG GK+TLA ++A   G +
Sbjct: 9   IRPQSIEDFVGQSHLRTRLR-----AMGQSQRLQSTLFFGPPGCGKSTLALIIAGNQGKS 63

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VG 139
               S P I     LA L   LE  ++L +DE+HR S   ++   P +E  ++ L+    
Sbjct: 64  HLRLSAPEIG----LAELRKKLEGLEILILDELHRFSKAQQDFFLPLLETGEIILLATTT 119

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199
           E PS    +  LSR  +                     +RL    + +L+ I +R  K  
Sbjct: 120 ENPSFSVTRQLLSRMNV---------------------LRLRSLSMPELRQIGERAVKEL 158

Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
            +++ +++   +A  S G  R    L+  VR+ 
Sbjct: 159 DVSIPEKSLDLLASLSGGDARTFLNLMEYVREL 191


>gi|167957055|ref|ZP_02544129.1| recombination factor protein RarA [candidate division TM7
           single-cell isolate TM7c]
          Length = 400

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 101/211 (47%), Gaps = 32/211 (15%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           L+RP+ +++  GQ    S  K+  +  K + E +  +L+ GPPG GKTTLA+++A+E   
Sbjct: 9   LMRPQKIKDIIGQRHLLSEGKILYKIIKQK-EPVSLILW-GPPGSGKTTLARIIAKETEA 66

Query: 81  NFRSTSGPVIAKAG-----DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           NF   S     K       ++A    NL+ R VLF+DEIHR S + ++   P +E   + 
Sbjct: 67  NFMELSAVTSGKKEINNIIEIARQNWNLQLRTVLFVDEIHRFSKVQQDAFLPHIESGLIT 126

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           L+    E PS   +   LSR  ++           PL+D+             D++ I+ 
Sbjct: 127 LIGATTENPSFEIITPLLSRVKVMT--------LKPLEDK-------------DIQQILT 165

Query: 194 RGAKLTGLA--VTDEAACEIAMRSRGTPRIA 222
           +  +    +  VT+E+   +A  S G  R+A
Sbjct: 166 KAIEKLAKSKLVTNESIEYLAHISSGDARVA 196


>gi|326201922|ref|ZP_08191792.1| AAA ATPase central domain protein [Clostridium papyrosolvens DSM
           2782]
 gi|325987717|gb|EGD48543.1| AAA ATPase central domain protein [Clostridium papyrosolvens DSM
           2782]
          Length = 427

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/214 (30%), Positives = 92/214 (42%), Gaps = 34/214 (15%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           + PRT++EF GQ       K+     KA  + +  ++  GPPG GKT+LA+++A     +
Sbjct: 12  MSPRTIDEFAGQKHIIGKDKMLYRMIKA--DRITSIILYGPPGTGKTSLARIIANTTQSS 69

Query: 82  FRS----TSGPVIAK--AGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F      TSG    K  A D    L N   R VLF+DEIHR +   ++ L P +ED  + 
Sbjct: 70  FEKLNAVTSGVADIKRIAADTQNTLLNPNGRTVLFVDEIHRFNKAQQDALLPFVEDGSIV 129

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVG-----LLTNPLQDRFGIPIRLNFYEIEDL 188
           L+    E P     K  +SR T+       G     LL N L+D+               
Sbjct: 130 LIGATTENPFFEVNKALISRSTVFMLKPLEGEDIKELLKNALEDK--------------- 174

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
                RG     + +TDEA   +   S G  R A
Sbjct: 175 ----DRGLGNYEINITDEAMDYLCEVSSGDARTA 204


>gi|189425566|ref|YP_001952743.1| recombination factor protein RarA [Geobacter lovleyi SZ]
 gi|189421825|gb|ACD96223.1| AAA ATPase central domain protein [Geobacter lovleyi SZ]
          Length = 435

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 124/264 (46%), Gaps = 50/264 (18%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPR+L EF GQ   +     L+  IEA     + L  ++F GPPG GKTTLA ++A E 
Sbjct: 20  MRPRSLGEFCGQEHLLGPGKALRKMIEA-----DQLPSMIFWGPPGCGKTTLAHIIAHET 74

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
              F   S  ++A   ++  +  + E       R +LF+DEIHR +   ++   PA+E  
Sbjct: 75  SSRFVFFSA-IMAGVKEIREIFKDAEAYAAGGTRTILFVDEIHRFNKAQQDAFLPAVEKG 133

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
            + ++    E PS          F +IA          PL  R  + +RL   E ++L T
Sbjct: 134 LVTIIGATTENPS----------FEVIA----------PLLSRCRV-LRLKQLEADELAT 172

Query: 191 IVQRGAKLT-------GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           ++Q+  + T        LA+ DEA   ++  ++G  R A   L  +   A +A    I+ 
Sbjct: 173 LLQKTLQDTEKGLGGLQLAIEDEALTFLSEAAQGDGRKA---LNTLEVAAGLAQDGLISL 229

Query: 244 EIADAALLRLAI--DKMGFDQLDL 265
           EIA  A+ + A+  DK G +  ++
Sbjct: 230 EIAQEAMQQKALLYDKGGEEHYNV 253


>gi|303246593|ref|ZP_07332871.1| AAA ATPase central domain protein [Desulfovibrio fructosovorans JJ]
 gi|302491933|gb|EFL51811.1| AAA ATPase central domain protein [Desulfovibrio fructosovorans JJ]
          Length = 408

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/201 (29%), Positives = 92/201 (45%), Gaps = 32/201 (15%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  L+ F GQ    S L   + A +     L  +LF GPPG GK+TLA ++AR     
Sbjct: 15  VRPGALDGFVGQTHVISRLTTMLAAPR-----LPSLLFFGPPGCGKSTLALILARAKERP 69

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VG 139
           +   S P   +AG LAAL   ++ +++L +DE+HR S   ++   P +E  ++ L+    
Sbjct: 70  YVRVSAP---EAG-LAALRELIKGKEILILDELHRFSKAQQDFFLPLLETGEIVLLATTT 125

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199
           E PS    +  LSR  +                      RL      +L  + +RGAK  
Sbjct: 126 ENPSFSVTRQLLSRLHV---------------------FRLRPLSQAELLVLAERGAKEA 164

Query: 200 GLAVTDEAACEIAMRSRGTPR 220
           G+ +  E+   +AM S G  R
Sbjct: 165 GMELAPESLEAVAMLSSGDGR 185


>gi|163815250|ref|ZP_02206627.1| hypothetical protein COPEUT_01410 [Coprococcus eutactus ATCC 27759]
 gi|158449445|gb|EDP26440.1| hypothetical protein COPEUT_01410 [Coprococcus eutactus ATCC 27759]
          Length = 443

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/140 (34%), Positives = 75/140 (53%), Gaps = 15/140 (10%)

Query: 2   MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD    +  N S++D+ ++  +RP +L++  GQ       K+   A KA  + +  ++F 
Sbjct: 1   MDLFEYMRENASEDDSPLAKRMRPVSLDDVVGQEHIIGKDKLLYRAIKA--DKISSLIFY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFR----STSGP-----VIAKAGDLAALLTNLEDRDVLFI 111
           GPPG GKTTLA V+A      FR    +T+G      V+ +A D+ A+      R +LFI
Sbjct: 59  GPPGTGKTTLAMVIANTTKAEFRQLNATTAGKKDMEQVVNEARDIKAMYGK---RTILFI 115

Query: 112 DEIHRLSIIVEEILYPAMED 131
           DEIHR +   ++ L P +ED
Sbjct: 116 DEIHRFNKSQQDYLLPFVED 135


>gi|183601785|ref|ZP_02963155.1| recombination factor protein RarA [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219683685|ref|YP_002470068.1| recombination factor protein RarA [Bifidobacterium animalis subsp.
           lactis AD011]
 gi|241190717|ref|YP_002968111.1| recombination factor protein RarA [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|241196123|ref|YP_002969678.1| recombination factor protein RarA [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|183219391|gb|EDT90032.1| recombination factor protein RarA [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219621335|gb|ACL29492.1| AAA ATPase, central domain protein [Bifidobacterium animalis subsp.
           lactis AD011]
 gi|240249109|gb|ACS46049.1| recombination factor protein RarA [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|240250677|gb|ACS47616.1| recombination factor protein RarA [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|295793706|gb|ADG33241.1| recombination factor protein RarA [Bifidobacterium animalis subsp.
           lactis V9]
          Length = 504

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 89/186 (47%), Gaps = 35/186 (18%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARA-EALDHVLFVGPPGLGKTTLAQVVARE 77
           +RP TL+E  GQ   +   S L+   ++A   +  A   V+  GPPG+GKTTLA +VA++
Sbjct: 23  MRPTTLDEVVGQRHVLAPGSPLRRLADSASTGSLTAPSSVILFGPPGVGKTTLAHIVAKQ 82

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAME 130
            G  +   S  V +   DL  +L    +R        VLFIDE+HR S   ++ L P++E
Sbjct: 83  SGRQYEELSA-VTSGVKDLREVLRRAHERLVSQGKETVLFIDEVHRFSKSQQDALLPSVE 141

Query: 131 DFQLDLMVG--EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +  +  +    E PS   +K  LSR  +                     ++L   E E+L
Sbjct: 142 NRDVTFIAATTENPSFSVIKPLLSRSVV---------------------VKLESLEPEEL 180

Query: 189 KTIVQR 194
           +T+++R
Sbjct: 181 RTVIER 186


>gi|303241541|ref|ZP_07328042.1| AAA ATPase central domain protein [Acetivibrio cellulolyticus CD2]
 gi|302590959|gb|EFL60706.1| AAA ATPase central domain protein [Acetivibrio cellulolyticus CD2]
          Length = 430

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 84/167 (50%), Gaps = 19/167 (11%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+TLEEF GQ +   + K+     KA  + +  V+  GPPG GKT+LA+++A     N
Sbjct: 12  MRPKTLEEFFGQEDIVGSGKLLYRMIKA--DRITSVILYGPPGTGKTSLARIIANTTKAN 69

Query: 82  FRSTSGPVIAKAGDLAALLT-------NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F   +  V A   D+  ++        N   + VLF+DEIHR +   ++ L P +ED  +
Sbjct: 70  FEKLNA-VTAGVSDIKRIVADTRNQILNPSQKTVLFVDEIHRFNKAQQDALLPYVEDGTI 128

Query: 135 DLMVG---EGPSARSVKINLSRFTL-----IAATTRVGLLTNPLQDR 173
            ++VG   E P     K  +SR ++     +     + ++ N L D+
Sbjct: 129 -ILVGATTENPYFEVNKALISRSSVFMLKPLGMGAIISIVKNALHDK 174


>gi|212716947|ref|ZP_03325075.1| hypothetical protein BIFCAT_01891 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660232|gb|EEB20807.1| hypothetical protein BIFCAT_01891 [Bifidobacterium catenulatum DSM
           16992]
          Length = 464

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 76/273 (27%), Positives = 116/273 (42%), Gaps = 53/273 (19%)

Query: 22  LRPRTLEEFTGQVEACSN----LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +RP +++E  GQ           ++   A+K    A   ++  GPPG+GKTTLA +VA++
Sbjct: 23  MRPSSVDEVVGQSRVLGQGSPLRRLANPASKGSLTAPSSIILFGPPGVGKTTLAYIVAKQ 82

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAME 130
            G  F   S  V +   D+  +L    DR        VLFIDE+HR S   ++ L P++E
Sbjct: 83  SGRVFEELSA-VTSGVKDVRDVLRRAHDRLVAEGKETVLFIDEVHRFSKSQQDALLPSVE 141

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT--NPLQDRFGIPIRLNFYEIEDL 188
           +  +                    T IAATT     +   PL  R  + ++L   E +DL
Sbjct: 142 NRDV--------------------TFIAATTENPSFSVIKPLLSR-SVVVKLESLEPDDL 180

Query: 189 KTIVQRGAK-----LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR-----DFAEVAHA 238
           KT++ R  +        + + DEA  EI   + G  R    +L         D A    A
Sbjct: 181 KTLINRAIESEYGLKNEVKINDEAVDEIVRMAGGDARKTLTILEAAAGALTGDKARKKGA 240

Query: 239 K------TITREIADAALLRLAIDKMGFDQLDL 265
           K       +  ++ D A +R   DK G D  D+
Sbjct: 241 KRPIITPDVVSQVMDVATVRY--DKDGDDHYDV 271


>gi|291519780|emb|CBK75001.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [Butyrivibrio fibrisolvens 16/4]
          Length = 439

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/117 (38%), Positives = 60/117 (51%), Gaps = 10/117 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP TL+E  GQ       K+   A KA  + L  ++F GPPG GKTTLAQV+A      
Sbjct: 22  LRPTTLDEVVGQQHIIGKDKLLYRAIKA--DKLSSIIFYGPPGTGKTTLAQVIAHTTAAE 79

Query: 82  FRSTSGPVIAKAGDLAAL-------LTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
           F S +     K  D+ A+       L     + +LFIDEIHR +   ++ L P +ED
Sbjct: 80  FTSINATTSGKK-DMEAVVEAAKQTLGAYGKKTILFIDEIHRFNKGQQDYLLPFVED 135


>gi|119025603|ref|YP_909448.1| recombination factor protein RarA [Bifidobacterium adolescentis
           ATCC 15703]
 gi|154487065|ref|ZP_02028472.1| hypothetical protein BIFADO_00903 [Bifidobacterium adolescentis
           L2-32]
 gi|118765187|dbj|BAF39366.1| hypothetical protein [Bifidobacterium adolescentis ATCC 15703]
 gi|154084928|gb|EDN83973.1| hypothetical protein BIFADO_00903 [Bifidobacterium adolescentis
           L2-32]
          Length = 466

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 100/217 (46%), Gaps = 40/217 (18%)

Query: 22  LRPRTLEEFTGQV----EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +RP ++++  GQ     E     ++   A+K    A   ++  GPPG+GKTTLA +VA++
Sbjct: 23  MRPASIDDVVGQSRVLGEGSPLRRLANPASKGSLTAPSSIILFGPPGVGKTTLAYIVAKQ 82

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAME 130
            G  F   S  V +   D+  +L    +R        VLFIDE+HR S   ++ L P++E
Sbjct: 83  SGRVFEELSA-VTSGVKDVRDVLKRAHERLVSEGKETVLFIDEVHRFSKSQQDALLPSVE 141

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT--NPLQDRFGIPIRLNFYEIEDL 188
           +  +                    T IAATT     +   PL  R  + ++L   E +DL
Sbjct: 142 NRDV--------------------TFIAATTENPSFSVIKPLLSR-SVVVKLESLEPDDL 180

Query: 189 KTIVQRG-AKLTGLA----VTDEAACEIAMRSRGTPR 220
           KT++ R  A   GL     +TDEA  EI   + G  R
Sbjct: 181 KTLINRAIASEHGLDNEIRITDEAVDEIIRMAGGDAR 217


>gi|218961662|ref|YP_001741437.1| ATPase, AAA family [Candidatus Cloacamonas acidaminovorans]
 gi|167730319|emb|CAO81231.1| ATPase, AAA family [Candidatus Cloacamonas acidaminovorans]
          Length = 437

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 84/169 (49%), Gaps = 22/169 (13%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHV 57
           + DRE L ++ V   +     LRP+TLEE  GQ   +   S L+  IE+ +  +      
Sbjct: 9   LFDREELSTKTVPLAEK----LRPQTLEELLGQTKLIAENSPLRQMIESGEYHS-----F 59

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLF 110
           +  GPPG GKTT+A+++ +  G NF   S  V+A   D+ A++   +        R +LF
Sbjct: 60  ILWGPPGSGKTTIARIIEKNSGYNFIRFSA-VLASISDVKAVMKEADYLHRTQNKRSILF 118

Query: 111 IDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLI 157
           IDEIHR +   ++   P +E   + L+    E PS   +   LSR T+ 
Sbjct: 119 IDEIHRFNKSQQDAFLPYVESGAIILIGATTENPSFEVIPALLSRCTVF 167


>gi|94986459|ref|YP_594392.1| recombination factor protein RarA [Lawsonia intracellularis
           PHE/MN1-00]
 gi|94730708|emb|CAJ54070.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [Lawsonia intracellularis PHE/MN1-00]
          Length = 410

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 92/215 (42%), Gaps = 32/215 (14%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP  L+ F GQ      L+  I A +     L  +LF GPPG GK+TLA ++A +   N
Sbjct: 10  LRPNNLDTFIGQNHLLERLQYIISAPR-----LPSLLFFGPPGCGKSTLALLLAYKKSTN 64

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VG 139
               S P       +  L   L D D+L +DEIHR S   ++   P +E  +L ++    
Sbjct: 65  ILRISAPETG----IQQLRQKLTDIDILILDEIHRFSKAQQDFFLPLLESGKLTMLATTT 120

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199
           E PS    K  LSR              N LQ R     +L + E   LK +V++G    
Sbjct: 121 ENPSFSVTKQLLSRL-------------NVLQLR-----QLGYNE---LKELVKKGTLFL 159

Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
            + + D+    +A  + G  R    L+  +    E
Sbjct: 160 NILLPDDVINFLATTAHGDARTLFNLIEYISILPE 194


>gi|42519086|ref|NP_965016.1| recombination factor protein RarA [Lactobacillus johnsonii NCC 533]
 gi|41583373|gb|AAS08982.1| hypothetical protein LJ_1160 [Lactobacillus johnsonii NCC 533]
          Length = 420

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/119 (35%), Positives = 65/119 (54%), Gaps = 3/119 (2%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           L+RP+ L +F GQ +  S  K   +  K        +L  GPPG GKT+LAQ++ARE   
Sbjct: 10  LIRPKNLSQFVGQTKLISEGKPLYQIIKNHVPI--SLLLWGPPGTGKTSLAQIIAREYDY 67

Query: 81  NFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
              + +  V  KA  +  + T      VL IDEIHR++  +++ L P +E+ Q+ L++G
Sbjct: 68  PLATFNASVDNKAKLMQIINTYPYQSFVLLIDEIHRMTTTLQDYLLPYLENGQI-LLIG 125


>gi|160893315|ref|ZP_02074102.1| hypothetical protein CLOL250_00864 [Clostridium sp. L2-50]
 gi|156865007|gb|EDO58438.1| hypothetical protein CLOL250_00864 [Clostridium sp. L2-50]
          Length = 438

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 104/234 (44%), Gaps = 54/234 (23%)

Query: 13  SQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           +Q+D D  L   +RP  L+E  GQ       K+   A KA  + L  ++F GPPG GKTT
Sbjct: 10  NQKDDDSPLAKRMRPENLDEVIGQEHIIGKNKLLYRAIKA--DKLGSLIFYGPPGTGKTT 67

Query: 70  LAQVVARELGVNFR----STSGP-----VIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           LA V+A     +F+    +TSG      +I +A +  A+      R +LFIDEIHR +  
Sbjct: 68  LAMVIAHTTKADFKQINATTSGKKDMEQIIEEAKNTKAMYGR---RTILFIDEIHRFNKS 124

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI-R 179
            ++ L P +ED                        LI ATT      NP  +  G  I R
Sbjct: 125 QQDYLLPFVED--------------------GTIILIGATTE-----NPYFEVNGALISR 159

Query: 180 LNFYEI-----EDLKTIV------QRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
            N +E+     E++K I+      Q+G     + + D+A   ++  S G  R A
Sbjct: 160 SNIFELKPLSKENIKDIILKAVYDQKGMGAFNVCIDDDAVEFLSDMSEGDARSA 213


>gi|208434367|ref|YP_002266033.1| conserved hypothetical helicase-like protein [Helicobacter pylori
           G27]
 gi|208432296|gb|ACI27167.1| conserved hypothetical helicase-like protein [Helicobacter pylori
           G27]
          Length = 391

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/117 (38%), Positives = 64/117 (54%), Gaps = 12/117 (10%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           SLL P++LE+F GQ           +A +++     H  F GPPG+GKT+LAQ++AR L 
Sbjct: 5   SLLNPKSLEDFLGQEHLVGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIARSLE 62

Query: 80  ---VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAME 130
              + F +T      K  DL   L N ++   + V+FIDE HRL+   +E L P ME
Sbjct: 63  RPILLFNATD----FKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115


>gi|289178455|gb|ADC85701.1| ATPase, AAA family [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 520

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 89/187 (47%), Gaps = 35/187 (18%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARA-EALDHVLFVGPPGLGKTTLAQVVARE 77
           +RP TL+E  GQ   +   S L+   ++A   +  A   V+  GPPG+GKTTLA +VA++
Sbjct: 39  MRPTTLDEVVGQRHVLAPGSPLRRLADSASTGSLTAPSSVILFGPPGVGKTTLAHIVAKQ 98

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAME 130
            G  +   S  V +   DL  +L    +R        VLFIDE+HR S   ++ L P++E
Sbjct: 99  SGRQYEELSA-VTSGVKDLREVLRRAHERLVSQGKETVLFIDEVHRFSKSQQDALLPSVE 157

Query: 131 DFQLDLMVG--EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +  +  +    E PS   +K  LSR  +                     ++L   E E+L
Sbjct: 158 NRDVTFIAATTENPSFSVIKPLLSRSVV---------------------VKLESLEPEEL 196

Query: 189 KTIVQRG 195
           +T+++R 
Sbjct: 197 RTVIERA 203


>gi|217031651|ref|ZP_03437156.1| hypothetical protein HPB128_21g209 [Helicobacter pylori B128]
 gi|298736639|ref|YP_003729165.1| recombination factor protein RarA [Helicobacter pylori B8]
 gi|216946851|gb|EEC25447.1| hypothetical protein HPB128_21g209 [Helicobacter pylori B128]
 gi|298355829|emb|CBI66701.1| recombination factor protein RarA [Helicobacter pylori B8]
          Length = 391

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/117 (38%), Positives = 64/117 (54%), Gaps = 12/117 (10%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           SLL P++LE+F GQ           +A +++     H  F GPPG+GKT+LAQ++AR L 
Sbjct: 5   SLLNPKSLEDFLGQEHLVGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIARSLE 62

Query: 80  ---VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAME 130
              + F +T      K  DL   L N ++   + V+FIDE HRL+   +E L P ME
Sbjct: 63  RPILLFNATD----FKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115


>gi|258405684|ref|YP_003198426.1| recombination factor protein RarA [Desulfohalobium retbaense DSM
           5692]
 gi|257797911|gb|ACV68848.1| AAA ATPase central domain protein [Desulfohalobium retbaense DSM
           5692]
          Length = 404

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 94/215 (43%), Gaps = 32/215 (14%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP +L++F GQ      L+    A++     L  +LF GPPG GK+TLA + A+  G  
Sbjct: 12  IRPHSLDDFIGQTHLRQRLQALQNASR-----LSSLLFFGPPGCGKSTLALMFAKAHGGA 66

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME--DFQLDLMVG 139
           +   S P +     LA L   +++ D+L +DE+HR S   ++   P +E  D  L     
Sbjct: 67  YLRVSAPEVG----LANLRKQIQNTDILILDELHRFSKAQQDFFLPLLETGDIILLATTT 122

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199
           E PS    +  LSR  +                     +RL     ++L  + QRG +  
Sbjct: 123 ENPSFSITRQLLSRLHV---------------------LRLRPLGPQELLDLAQRGQQEL 161

Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
           GL + D++   +   + G  R    LL    + +E
Sbjct: 162 GLHLPDKSLELLCTYAGGDGRTLLNLLEYAEELSE 196


>gi|50547977|ref|XP_501458.1| YALI0C05038p [Yarrowia lipolytica]
 gi|49647325|emb|CAG81759.1| YALI0C05038p [Yarrowia lipolytica]
          Length = 626

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/215 (29%), Positives = 102/215 (47%), Gaps = 46/215 (21%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           L RP+TL++ +GQ E  + L+ F+   +     +  ++F GPPG+GKTTLA+++A+  G 
Sbjct: 128 LCRPQTLDDISGQKELMAVLRRFVAYGR-----IPSIIFWGPPGVGKTTLARILAKTSGN 182

Query: 81  NFRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            F   S           VI +A +   LL       +LFIDE+HR S   +++L PA+E 
Sbjct: 183 RFVELSATQNNVADVKKVIDQANNEWKLLKR---GTILFIDELHRFSKAQQDVLLPAVEK 239

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAA-TTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
             + L+    E PS          F L+ A T+R  +LT            L    ++D+
Sbjct: 240 GDITLIGATTENPS----------FRLVGALTSRCRVLT------------LKKLSMKDI 277

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAG 223
           K +V+R      +   D A  E+ + +     IAG
Sbjct: 278 KEVVERSL----VKYNDTAEHEVILPTEVIDYIAG 308


>gi|52425453|ref|YP_088590.1| recombination factor protein RarA [Mannheimia succiniciproducens
           MBEL55E]
 gi|52307505|gb|AAU38005.1| unknown [Mannheimia succiniciproducens MBEL55E]
          Length = 449

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 79/155 (50%), Gaps = 10/155 (6%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M +  L S+N +Q     S LRP +L+EF GQ       KV  +      + L  ++F G
Sbjct: 10  MKQTSLFSQNNTQNQPLASRLRPTSLDEFVGQKHLLEPGKVLQQMI--VQDELSSMIFWG 67

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIH 115
           P G+GKTTLAQ++A +    F + S  V++   D+  ++   E      ++ ++FIDEIH
Sbjct: 68  PSGVGKTTLAQIIAHQTNAKFITFSA-VVSGIKDIKKIMEEAETDREMGEKTIVFIDEIH 126

Query: 116 RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN 150
           R +   ++   P +E   + +++G      S +IN
Sbjct: 127 RFNKAQQDAFLPYVEKGSI-ILIGATTENPSFEIN 160


>gi|218133225|ref|ZP_03462029.1| hypothetical protein BACPEC_01089 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992098|gb|EEC58102.1| hypothetical protein BACPEC_01089 [Bacteroides pectinophilus ATCC
           43243]
          Length = 447

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 73/139 (52%), Gaps = 11/139 (7%)

Query: 1   MMDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           +MD    +  N  ++++ + S +RP TLEE  GQ       ++   A KA  + +  ++F
Sbjct: 4   LMDLFQYMRENTMEKESPLASRMRPETLEEVVGQQHIIGKDRLLYRAIKA--DKISSIIF 61

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFID 112
            GPPG GKTTLA+V+A     +F   +  V  K  D+  ++   +D       + +LF+D
Sbjct: 62  YGPPGTGKTTLAKVIANTTSADFCQINATVAGKK-DMEDVVAKAKDNIGMYGRKTILFVD 120

Query: 113 EIHRLSIIVEEILYPAMED 131
           EIHR +   ++ L P +ED
Sbjct: 121 EIHRFNKGQQDYLLPFVED 139


>gi|317009066|gb|ADU79646.1| recombination factor protein RarA [Helicobacter pylori India7]
          Length = 391

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/114 (38%), Positives = 62/114 (54%), Gaps = 6/114 (5%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           SLL P++LE+F GQ           +A +++     H  F GPPG+GKT+LAQ++AR L 
Sbjct: 5   SLLNPKSLEDFLGQEHLVGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIARMLE 62

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAME 130
             F   +     K  DL   L N ++   + V+FIDE HRL+   +E L P ME
Sbjct: 63  RPFLLFNATDF-KLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115


>gi|289643078|ref|ZP_06475209.1| AAA ATPase central domain protein [Frankia symbiont of Datisca
           glomerata]
 gi|289507122|gb|EFD28090.1| AAA ATPase central domain protein [Frankia symbiont of Datisca
           glomerata]
          Length = 526

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/120 (39%), Positives = 64/120 (53%), Gaps = 16/120 (13%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPRTL+E  GQ   + A S L+  +E     +     VL  GPPG GKTTLA +++   
Sbjct: 22  LRPRTLDELVGQRHLLGAGSPLRRLVEGGGTTS-----VLLWGPPGSGKTTLAHIISGSG 76

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131
           G  FR  S  V A   D+ A++    D       R VLFIDE+HR +   ++ L PA+E+
Sbjct: 77  GRRFRELSA-VTAGVKDVRAVIDQARDTLAVSGVRTVLFIDEVHRFTRTQQDALLPAVEN 135


>gi|225174582|ref|ZP_03728580.1| AAA ATPase central domain protein [Dethiobacter alkaliphilus AHT 1]
 gi|225169709|gb|EEG78505.1| AAA ATPase central domain protein [Dethiobacter alkaliphilus AHT 1]
          Length = 445

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 68/217 (31%), Positives = 93/217 (42%), Gaps = 42/217 (19%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TLE F GQ         L+  IE+     + L  +LF GPPG GKTTLA+++A + 
Sbjct: 22  LRPKTLEGFAGQTHLVGEGKPLRRLIES-----DVLSSLLFYGPPGTGKTTLAEIIAEKT 76

Query: 79  GVNF---RSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDF 132
              F    + S  V     ++ A    L     R VLF+DEIHR +   ++ L PA+E  
Sbjct: 77  NAAFVRVNAVSSSVSELRKEMEAARNRLAQEGKRTVLFVDEIHRFNKAQQDALLPAVEK- 135

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT--NPLQDRFGIPIRLNFYEIEDLKT 190
                                  LI ATT     T   PL  R  I         ED++ 
Sbjct: 136 -------------------GIVVLIGATTENPYFTVNAPLLSRMRI-FPFEPLSAEDVRA 175

Query: 191 IVQRG-----AKLTGLAVTDEAACEIAMRSRGTPRIA 222
           ++ R      A+L  +  TDEA   +AM + G  R A
Sbjct: 176 LLVRAQSEPEARLETVEFTDEALDHLAMMANGDARTA 212


>gi|229827568|ref|ZP_04453637.1| hypothetical protein GCWU000182_02957 [Abiotrophia defectiva ATCC
           49176]
 gi|229788206|gb|EEP24320.1| hypothetical protein GCWU000182_02957 [Abiotrophia defectiva ATCC
           49176]
          Length = 437

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 81/267 (30%), Positives = 118/267 (44%), Gaps = 53/267 (19%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP     F GQ         L+  IE      + +  ++F GPPG+GKTTLA ++A + 
Sbjct: 20  LRPEEFSAFAGQEHLIGEGKLLRRLIEN-----DNITSMIFWGPPGVGKTTLAGIIAAKT 74

Query: 79  G---VNFRS-TSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
               +NF + TSG      V+AKAG+   L      R VLF+DEIHR +   ++   P +
Sbjct: 75  HSEFINFSAVTSGIKEIKEVMAKAGETRKLGM----RTVLFVDEIHRFNKAQQDAFLPFV 130

Query: 130 EDFQLDLMVGEGPSARSVKIN---LSR---FTLIAATTR--VGLLTNPLQDRFGIPIRLN 181
           E   + +++G      S +IN   LSR   F L   TT     LLT  L+D+        
Sbjct: 131 ERGSI-ILIGATTENPSFEINAALLSRCKVFVLKQLTTEDIAKLLTRALKDK-------- 181

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
                       +G  +  + + DE    IA+ S G  R A   L    +  E    KTI
Sbjct: 182 ------------KGFGMLNVEIADELVHAIALFSNGDARTALNTLEMAINNGEFTKEKTI 229

Query: 242 -TREIADAALLRLAI--DKMGFDQLDL 265
            T+EI +    + A+  DK G +  +L
Sbjct: 230 VTKEIVEQCTGKKALLYDKNGEEHYNL 256


>gi|297243480|ref|ZP_06927412.1| helicase subunit of the Holliday junction resolvase-like ATPase
           [Gardnerella vaginalis AMD]
 gi|296888525|gb|EFH27265.1| helicase subunit of the Holliday junction resolvase-like ATPase
           [Gardnerella vaginalis AMD]
          Length = 455

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 89/192 (46%), Gaps = 37/192 (19%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAE----ALDHVLFVGPPGLGKTTLAQVVARE 77
           +RP ++E+  GQ+ A          A  ++     A   V+  GPPG+GKTTLA +VAR+
Sbjct: 23  MRPSSIEDVLGQLHALKEGSPLRRLANPQSRGSLTAPSSVVLFGPPGVGKTTLAYIVARQ 82

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAME 130
            G  F   S  V +   D+ A+L    +R        VLFIDE+HR S   ++ L P++E
Sbjct: 83  SGRVFEELSA-VTSGVKDVRAVLDRAHERLVSNGQETVLFIDEVHRFSKSQQDALLPSVE 141

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +  +  +    E PS   +K  LSR                      + ++L    +EDL
Sbjct: 142 NRDVTFIGATTENPSFSIIKPLLSR---------------------SVVVKLESLSVEDL 180

Query: 189 KTIVQRGAKLTG 200
            T+++R   LTG
Sbjct: 181 HTLIERA--LTG 190


>gi|196228384|ref|ZP_03127251.1| AAA ATPase central domain protein [Chthoniobacter flavus Ellin428]
 gi|196227787|gb|EDY22290.1| AAA ATPase central domain protein [Chthoniobacter flavus Ellin428]
          Length = 426

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/116 (37%), Positives = 65/116 (56%), Gaps = 10/116 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR+LEE+ GQ    +  K+   A +A  + +  ++  GPPG GKTTLA+++A      
Sbjct: 1   MRPRSLEEYAGQEHILAPGKLLRRAIEA--DRISSIILFGPPGTGKTTLAEIIASATQSR 58

Query: 82  FRSTSGPVIAKAGDL-------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           F   SG V +   DL       A  LTN  ++ +LFIDEIHR +   +++L P +E
Sbjct: 59  FERLSG-VESNVADLRRVIATAANRLTNKGEKTILFIDEIHRWNKAQQDVLLPDVE 113


>gi|148657906|ref|YP_001278111.1| recombination factor protein RarA [Roseiflexus sp. RS-1]
 gi|148570016|gb|ABQ92161.1| AAA ATPase, central domain protein [Roseiflexus sp. RS-1]
          Length = 505

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 82/162 (50%), Gaps = 15/162 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRTL+EF GQ       KV   A     +AL  ++  GPPG GKTTLA+++A     +
Sbjct: 27  MRPRTLDEFVGQDHIIGEGKVLRRAISN--DALFSIILWGPPGSGKTTLARIIADTTNAH 84

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F   S  V A   DL  ++   +D       R ++FIDEIHR +   ++ + P +ED  +
Sbjct: 85  FEQLSA-VSAGVADLRRVVKEAQDRLGMFQQRTIVFIDEIHRFNKAQQDAILPYVEDGTI 143

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
            +++G      S ++N +    + +  RV +L     D+ G+
Sbjct: 144 -ILIGATTENPSFEVNPA----LRSRARVFVLEALTDDQIGV 180


>gi|311064077|ref|YP_003970802.1| AAA family ATPase [Bifidobacterium bifidum PRL2010]
 gi|310866396|gb|ADP35765.1| AAA family ATPase [Bifidobacterium bifidum PRL2010]
          Length = 468

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 81/273 (29%), Positives = 118/273 (43%), Gaps = 53/273 (19%)

Query: 22  LRPRTLEEFTGQV----EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +RPRT++E  GQ     E     ++   ++K    A   ++  GPPG+GKTTLA +VAR+
Sbjct: 24  MRPRTVDEVLGQSHVLGEGSPLRRLANPSSKGSLTAPSSIIMFGPPGVGKTTLATIVARQ 83

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAME 130
            G  F   S  V +   D+  +L     R        VLFIDE+HR S   ++ L PA+E
Sbjct: 84  SGRAFEELSA-VTSGVKDVRDVLARARRRLVGDGTETVLFIDEVHRFSKSQQDALLPAVE 142

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +  +  +    E PS   +K  LSR  +                     ++L   E  DL
Sbjct: 143 NRDVTFIGATTENPSFSVIKPLLSRSVV---------------------VKLESLEPSDL 181

Query: 189 KTIVQRGAK----LTGLAVTDEAAC-EIAMRSRGTPRIAGRLLRRVR-----DFAEVAHA 238
            T++ R  +    L G    D+AA  EI   + G  R    +L         D A    A
Sbjct: 182 ATLIARAVEDKRGLNGEVKIDDAAVNEIVRMAGGDARKTLTILEAAAGAVTGDKARKKGA 241

Query: 239 K--TIT----REIADAALLRLAIDKMGFDQLDL 265
           +  TIT     ++ DAA +R   DK G D  D+
Sbjct: 242 RRPTITPDVVSQVMDAATVRY--DKDGDDHYDV 272


>gi|261337911|ref|ZP_05965795.1| ATPase, AAA family [Bifidobacterium gallicum DSM 20093]
 gi|270277391|gb|EFA23245.1| ATPase, AAA family [Bifidobacterium gallicum DSM 20093]
          Length = 460

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 50/149 (33%), Positives = 78/149 (52%), Gaps = 14/149 (9%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAK-ARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +RP TL+E  GQ   +++ S L+   + A      A   ++  GPPG+GKTTLA +VA++
Sbjct: 23  MRPHTLDEVIGQQRVLQSGSPLRRLADPASLGSLTAPSSIILFGPPGVGKTTLATIVAQQ 82

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAME 130
            G  F   S  V +   D+ A+L    +R        VLFIDE+HR S   ++ L P++E
Sbjct: 83  SGRAFEELSA-VTSGVKDVRAVLARAHERLVSSGQETVLFIDEVHRFSKSQQDALLPSVE 141

Query: 131 DFQLDLMVG--EGPSARSVKINLSRFTLI 157
           +  +  +    E PS   +K  LSR  ++
Sbjct: 142 NRDITFIAATTENPSFSVIKPLLSRSVVV 170


>gi|260589707|ref|ZP_05855620.1| replication-associated recombination protein A [Blautia hansenii
           DSM 20583]
 gi|331083138|ref|ZP_08332255.1| hypothetical protein HMPREF0992_01179 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260539947|gb|EEX20516.1| replication-associated recombination protein A [Blautia hansenii
           DSM 20583]
 gi|330405140|gb|EGG84677.1| hypothetical protein HMPREF0992_01179 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 439

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 65/125 (52%), Gaps = 10/125 (8%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           S +RP TLEE  GQ       K+   A KA  + L  V+F GPPG GKTTLA+V+A    
Sbjct: 20  SRMRPVTLEEVAGQEHIIGKDKLLYRAIKA--DKLGSVIFYGPPGTGKTTLAKVIANTTS 77

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDF 132
             F+  +  V  K  D+  ++   +        + +LF+DEIHR +   ++ L P +ED 
Sbjct: 78  ARFKQINATVAGKK-DMEEVVKEAQQHLGMYGKKTILFVDEIHRFNKGQQDYLLPFVEDG 136

Query: 133 QLDLM 137
            L L+
Sbjct: 137 TLILI 141


>gi|315586413|gb|ADU40794.1| crossover junction endodeoxyribonuclease ATPase [Helicobacter
           pylori 35A]
          Length = 391

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/117 (38%), Positives = 64/117 (54%), Gaps = 12/117 (10%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           SLL P++LE+F GQ           +A +++     H  F GPPG+GKT+LAQ++AR L 
Sbjct: 5   SLLNPKSLEDFLGQEHLIGKDTPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIARMLE 62

Query: 80  ---VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAME 130
              + F +T      K  DL   L N ++   + V+FIDE HRL+   +E L P ME
Sbjct: 63  RPILLFNATD----FKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115


>gi|261837854|gb|ACX97620.1| hypothetical protein KHP_0409 [Helicobacter pylori 51]
          Length = 391

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/117 (38%), Positives = 64/117 (54%), Gaps = 12/117 (10%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           SLL P++LE+F GQ           +A +++     H  F GPPG+GKT+LAQ++AR L 
Sbjct: 5   SLLNPKSLEDFLGQEHLIGKDTPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIARMLE 62

Query: 80  ---VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAME 130
              + F +T      K  DL   L N ++   + V+FIDE HRL+   +E L P ME
Sbjct: 63  RPILLFNATD----FKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115


>gi|167745397|ref|ZP_02417524.1| hypothetical protein ANACAC_00088 [Anaerostipes caccae DSM 14662]
 gi|167655118|gb|EDR99247.1| hypothetical protein ANACAC_00088 [Anaerostipes caccae DSM 14662]
          Length = 439

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 61/116 (52%), Gaps = 8/116 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+TL+E  GQ       K+   A +A  + L  ++F GPPG GKTTLA+V+A+    N
Sbjct: 22  MRPKTLDEVVGQEHIIGKDKLLYRAIQA--DKLSSIIFYGPPGTGKTTLARVIAQTTQAN 79

Query: 82  FRSTSGPVIAKAGDLAAL------LTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
           F   +     K     A+      L   + + +LFIDEIHR +   ++ L P +ED
Sbjct: 80  FVQMNATTSGKKEMQEAVKEAKEALGMFQKKTILFIDEIHRFNKAQQDFLLPFVED 135


>gi|310287217|ref|YP_003938475.1| AAA family ATPase [Bifidobacterium bifidum S17]
 gi|309251153|gb|ADO52901.1| AAA family ATPase [Bifidobacterium bifidum S17]
          Length = 468

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 81/273 (29%), Positives = 118/273 (43%), Gaps = 53/273 (19%)

Query: 22  LRPRTLEEFTGQV----EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +RPRT++E  GQ     E     ++   ++K    A   ++  GPPG+GKTTLA +VAR+
Sbjct: 24  MRPRTVDEVLGQSHVLGEGSPLRRLANPSSKGSLTAPSSIIMFGPPGVGKTTLATIVARQ 83

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAME 130
            G  F   S  V +   D+  +L     R        VLFIDE+HR S   ++ L PA+E
Sbjct: 84  SGRAFEELSA-VTSGVKDVRDVLARARRRLVGDGTETVLFIDEVHRFSKSQQDALLPAVE 142

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +  +  +    E PS   +K  LSR  +                     ++L   E  DL
Sbjct: 143 NRDVTFIGATTENPSFSVIKPLLSRSVV---------------------VKLESLEPSDL 181

Query: 189 KTIVQRGAK----LTGLAVTDEAAC-EIAMRSRGTPRIAGRLLRRVR-----DFAEVAHA 238
            T++ R  +    L G    D+AA  EI   + G  R    +L         D A    A
Sbjct: 182 ATLIARAVEDKRGLNGEVKIDDAAVNEIVRMAGGDARKTLTILEAAAGAVTGDKARKKGA 241

Query: 239 K--TIT----REIADAALLRLAIDKMGFDQLDL 265
           +  TIT     ++ DAA +R   DK G D  D+
Sbjct: 242 RRPTITPDVVSQVMDAATVRY--DKDGDDHYDV 272


>gi|188527230|ref|YP_001909917.1| recombination factor protein RarA [Helicobacter pylori Shi470]
 gi|188143470|gb|ACD47887.1| recombination factor protein RarA [Helicobacter pylori Shi470]
          Length = 391

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/117 (38%), Positives = 64/117 (54%), Gaps = 12/117 (10%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           SLL P++LE+F GQ           +A +++     H  F GPPG+GKT+LAQ++AR L 
Sbjct: 5   SLLNPKSLEDFLGQEHLIGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIARMLE 62

Query: 80  ---VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAME 130
              + F +T      K  DL   L N ++   + V+FIDE HRL+   +E L P ME
Sbjct: 63  RPILLFNATD----FKLEDLRLKLKNYQNTLLKPVIFIDETHRLNKTQQEFLLPIME 115


>gi|313898685|ref|ZP_07832220.1| replication-associated recombination protein A [Clostridium sp.
           HGF2]
 gi|312956569|gb|EFR38202.1| replication-associated recombination protein A [Clostridium sp.
           HGF2]
          Length = 441

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 131/281 (46%), Gaps = 42/281 (14%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M++  L   +V Q+D   + LRP +L+++ GQ       K+     +   + +  ++F G
Sbjct: 1   MEQNSLFQNDV-QKDPLAARLRPASLQDYVGQKHLLGKGKILYNLIEK--DMVSSMIFWG 57

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIH 115
           PPG+GKTTLA+++AR+   +F + S  V +   ++ A++   ED      + ++F+DEIH
Sbjct: 58  PPGVGKTTLARIIARQTQAHFINFSA-VTSGIREIKAVMKEAEDARLYGRKTIVFVDEIH 116

Query: 116 RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN---LSR---FTLIA--ATTRVGLLT 167
           R +   ++   P +E   + +++G      S ++N   LSR   F L A   +  V LL 
Sbjct: 117 RFNKAQQDAFLPYVEKGSI-ILIGATTENPSFEVNAALLSRCKVFVLKALEVSDLVELLK 175

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
           + LQD                    +RG     + +T+E    +A+ + G  R A   L 
Sbjct: 176 HALQD--------------------ERGFGSQHVLITEEQLHMLAVFANGDARTALNTLE 215

Query: 228 RVRDFAEVAHAK-TITREIADAALLR--LAIDKMGFDQLDL 265
            V    E + A   IT+E+ +    +  L  D+ G +  +L
Sbjct: 216 MVVLNGESSEAGIVITKEVLEQCTSQKSLLYDRQGEEHYNL 256


>gi|317473057|ref|ZP_07932357.1| ATPase [Anaerostipes sp. 3_2_56FAA]
 gi|316899486|gb|EFV21500.1| ATPase [Anaerostipes sp. 3_2_56FAA]
          Length = 439

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 61/116 (52%), Gaps = 8/116 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+TL+E  GQ       K+   A +A  + L  ++F GPPG GKTTLA+V+A+    N
Sbjct: 22  MRPKTLDEVVGQEHIIGKDKLLYRAIQA--DKLSSIIFYGPPGTGKTTLARVIAQTTQAN 79

Query: 82  FRSTSGPVIAKAGDLAAL------LTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
           F   +     K     A+      L   + + +LFIDEIHR +   ++ L P +ED
Sbjct: 80  FVQMNATTSGKKEMQEAVKEAKEALGMFQKKTILFIDEIHRFNKAQQDFLLPFVED 135


>gi|309388968|gb|ADO76848.1| Recombination protein MgsA [Halanaerobium praevalens DSM 2228]
          Length = 447

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 70/127 (55%), Gaps = 15/127 (11%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP++L EF GQ E     K+   A KA  + L  ++F GPPG GKT+LAQV+A +   +
Sbjct: 21  MRPQSLAEFYGQAEIVGENKLLSRAIKA--DRLQSLIFYGPPGTGKTSLAQVIANQTEAD 78

Query: 82  FRS----TSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           F      T+G      VI KA     L  +   + +LFIDEIHR +   ++ L P++E  
Sbjct: 79  FVKLNAVTAGVKDIREVIKKAKSNRNLYNS---KTILFIDEIHRFNKSQQDALLPSVEKG 135

Query: 133 QLDLMVG 139
            + +M+G
Sbjct: 136 TI-IMIG 141


>gi|220929355|ref|YP_002506264.1| recombination factor protein RarA [Clostridium cellulolyticum H10]
 gi|219999683|gb|ACL76284.1| AAA ATPase central domain protein [Clostridium cellulolyticum H10]
          Length = 432

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 65/207 (31%), Positives = 91/207 (43%), Gaps = 37/207 (17%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           + PRT++EF GQ       K+     KA  + +  ++  GPPG GKT+LA+++A      
Sbjct: 12  MSPRTIDEFVGQKHIIEKDKMLYRMIKA--DRITSIILYGPPGTGKTSLARIIANTTQST 69

Query: 82  FRS----TSGPVIAK--AGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F      TSG    K  A D    L N   R VLFIDEIHR +   ++ L P +ED  + 
Sbjct: 70  FEKLNAVTSGVADIKRIAADTQNTLLNPNGRTVLFIDEIHRFNKSQQDALLPFVEDGSIV 129

Query: 136 LM--VGEGPSARSVKINLSRFTL-----IAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           L+    E P     K  +SR T+     + +T    LL N L D+               
Sbjct: 130 LIGATTENPFFEVNKALISRSTVFMLKPLESTDIRELLENALVDK--------------- 174

Query: 189 KTIVQRGAKLTGLAVTDEA---ACEIA 212
               +RG     + +TDEA    CEI 
Sbjct: 175 ----ERGLGNYKINITDEALGYLCEIC 197


>gi|317179185|dbj|BAJ56973.1| recombination factor protein RarA [Helicobacter pylori F30]
          Length = 391

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/117 (38%), Positives = 64/117 (54%), Gaps = 12/117 (10%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           SLL P++LE+F GQ           +A +++     H  F GPPG+GKT+LAQ++AR L 
Sbjct: 5   SLLNPKSLEDFLGQEHLIGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIARMLE 62

Query: 80  ---VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAME 130
              + F +T      K  DL   L N ++   + V+FIDE HRL+   +E L P ME
Sbjct: 63  RPILLFNATD----FKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115


>gi|317177233|dbj|BAJ55022.1| recombination factor protein RarA [Helicobacter pylori F16]
          Length = 391

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/117 (38%), Positives = 64/117 (54%), Gaps = 12/117 (10%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           SLL P++LE+F GQ           +A +++     H  F GPPG+GKT+LAQ++AR L 
Sbjct: 5   SLLNPKSLEDFLGQEHLIGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIARMLE 62

Query: 80  ---VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAME 130
              + F +T      K  DL   L N ++   + V+FIDE HRL+   +E L P ME
Sbjct: 63  RPILLFNATD----FKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115


>gi|284047303|ref|YP_003397643.1| ATPase AAA [Conexibacter woesei DSM 14684]
 gi|283951524|gb|ADB54268.1| AAA ATPase central domain protein [Conexibacter woesei DSM 14684]
          Length = 427

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 78/263 (29%), Positives = 115/263 (43%), Gaps = 54/263 (20%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTLEE+ GQ   +   S L+  IE  +  +     ++  GPPG GKTTLA++VA   
Sbjct: 25  MRPRTLEEYVGQEHLLHDGSALRTAIEQGRPHS-----MILYGPPGAGKTTLARIVASSA 79

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDF 132
              F   S   + +  ++ A++   E R       + F+DEIHR +   ++ L PA+ED 
Sbjct: 80  DAVFEELSAVQVGRP-EVRAVIERAEQRRRMGRQTIFFLDEIHRFNKAQQDALLPAVED- 137

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI-RLNFYEIEDLK-- 189
                               R TLI ATT      NP  +  G  + R   Y + +L   
Sbjct: 138 -------------------GRLTLIGATT-----ENPSYEVNGALLSRARLYALRELTED 173

Query: 190 ---TIVQRGA--KLTGLAVTDEAACE-IAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
              T+++R    +  GL   D+ A E +A RS G  R A   L  +    + A    +T 
Sbjct: 174 HVLTLLRRAVERRECGLVSVDDDALELLAARSGGDARTA---LAALELACDTAPESKVTL 230

Query: 244 EIADAALLR--LAIDKMGFDQLD 264
           E A+ AL R  L  D+      D
Sbjct: 231 EHAEDALQRRILHYDRASDHHYD 253


>gi|307637117|gb|ADN79567.1| ATPase [Helicobacter pylori 908]
 gi|325995708|gb|ADZ51113.1| ATPase [Helicobacter pylori 2018]
 gi|325997304|gb|ADZ49512.1| putative recombination factor protein [Helicobacter pylori 2017]
          Length = 391

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 64/117 (54%), Gaps = 12/117 (10%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +LL P +LE+F GQ           +A +++     H  F GPPG+GKT+LAQ++AR L 
Sbjct: 5   ALLNPTSLEDFLGQEHLIGKDTPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIARSLE 62

Query: 80  ---VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAME 130
              ++F +T      K  DL   L N ++   + V+FIDE HRL+   +E L P ME
Sbjct: 63  RPILSFNATD----FKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115


>gi|229817989|ref|ZP_04448271.1| hypothetical protein BIFANG_03276 [Bifidobacterium angulatum DSM
           20098]
 gi|229784593|gb|EEP20707.1| hypothetical protein BIFANG_03276 [Bifidobacterium angulatum DSM
           20098]
          Length = 458

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 74/149 (49%), Gaps = 14/149 (9%)

Query: 22  LRPRTLEEFTGQVEACSN----LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +RP TL+E  GQ           ++   A+K    A   ++  GPPG+GKTTLA +VA++
Sbjct: 24  MRPHTLDEVVGQSHVLGQGSPLRRLANPASKGSLTAPSSIILFGPPGVGKTTLATIVAKQ 83

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAME 130
            G  F   S  V +   D+  +L    +R        VLFIDE+HR S   ++ L PA+E
Sbjct: 84  SGREFEELSA-VTSGVKDVRDVLDRAHERLVSQGKETVLFIDEVHRFSKSQQDALLPAVE 142

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLI 157
           +  +  +    E PS   +K  LSR  ++
Sbjct: 143 NRDVTFIGATTENPSFSVIKPLLSRSVVV 171


>gi|308061773|gb|ADO03661.1| recombination factor protein RarA [Helicobacter pylori Cuz20]
          Length = 391

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/117 (38%), Positives = 64/117 (54%), Gaps = 12/117 (10%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           SLL P++LE+F GQ           +A +++     H  F GPPG+GKT+LAQ++AR L 
Sbjct: 5   SLLNPKSLEDFLGQEHLIGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIARMLE 62

Query: 80  ---VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAME 130
              + F +T      K  DL   L N ++   + V+FIDE HRL+   +E L P ME
Sbjct: 63  RPILLFNATD----FKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115


>gi|20808203|ref|NP_623374.1| recombination factor protein RarA [Thermoanaerobacter tengcongensis
           MB4]
 gi|254479310|ref|ZP_05092650.1| ATPase, AAA family protein [Carboxydibrachium pacificum DSM 12653]
 gi|20516797|gb|AAM24978.1| uncharacterized ATPase related to the helicase subunit of the
           Holliday junction resolvase [Thermoanaerobacter
           tengcongensis MB4]
 gi|214034758|gb|EEB75492.1| ATPase, AAA family protein [Carboxydibrachium pacificum DSM 12653]
          Length = 440

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 121/260 (46%), Gaps = 38/260 (14%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRTL+EF GQ       K   E  +   +++  ++  GPPG+GKTTLA ++A      
Sbjct: 22  MRPRTLDEFVGQEHILGKGKALRELIEK--DSITSMILWGPPGVGKTTLAMIIANMTNSK 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F + S  V++   ++  ++   E       R V+FIDEIHR +   ++   P +E   + 
Sbjct: 80  FVNFSA-VLSGIKEIKEIMAQAERDAMYGQRTVVFIDEIHRFNKAQQDAFLPHVEKGNI- 137

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           +++G      S ++N    + + + ++V  +  PL             +++D+  I++R 
Sbjct: 138 ILIGATTENPSFEVN----SALLSRSKV-FMMKPL-------------DVKDIMIILKRA 179

Query: 196 AK-------LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK-TITREIAD 247
            K       L  + + +E   +IA+ S G  R+A   L      A V + K  +T EI  
Sbjct: 180 LKDEERGLGLYNVEIDEEKLEKIALFSNGDARVALNTLEMAVMAANVVNGKRVVTDEILS 239

Query: 248 AALLRLAI--DKMGFDQLDL 265
             + + A+  DK G +  +L
Sbjct: 240 DVMQKKALLYDKAGEEHYNL 259


>gi|308063282|gb|ADO05169.1| recombination factor protein RarA [Helicobacter pylori Sat464]
          Length = 391

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/117 (38%), Positives = 64/117 (54%), Gaps = 12/117 (10%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           SLL P++LE+F GQ           +A +++     H  F GPPG+GKT+LAQ++AR L 
Sbjct: 5   SLLNPKSLEDFLGQEHLIGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIARMLE 62

Query: 80  ---VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAME 130
              + F +T      K  DL   L N ++   + V+FIDE HRL+   +E L P ME
Sbjct: 63  RPILLFNATD----FKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115


>gi|317153252|ref|YP_004121300.1| MgsA AAA+ ATPase-like protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316943503|gb|ADU62554.1| MgsA AAA+ ATPase-like protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 407

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 73/138 (52%), Gaps = 11/138 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP++L+EF GQ    + ++ F ++ +     L  +L  GPPG GK+TLA ++AR  G  
Sbjct: 15  IRPKSLDEFVGQGHIRNRIEAFTKSKR-----LPSLLLFGPPGCGKSTLAMLLARLTGKK 69

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VG 139
               S P   +AG L AL   L   D+L +DE+HR S   ++   P +E  ++ L+    
Sbjct: 70  SLRLSAP---EAG-LTALRKQLPGHDILILDELHRFSKAQQDFFLPILESGEITLLATTT 125

Query: 140 EGPSARSVKINLSRFTLI 157
           E PS    +  LSR  ++
Sbjct: 126 ENPSFSVTRQLLSRLHVL 143


>gi|301112162|ref|XP_002905160.1| ATPase WRNIP1 [Phytophthora infestans T30-4]
 gi|262095490|gb|EEY53542.1| ATPase WRNIP1 [Phytophthora infestans T30-4]
          Length = 499

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 49/144 (34%), Positives = 72/144 (50%), Gaps = 18/144 (12%)

Query: 22  LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP  L +  GQ E     S L   IEA +     + +++  GPPG GKTTLA V++++ 
Sbjct: 90  MRPTDLNDLVGQEELLGPGSLLSTLIEADR-----VPNMILWGPPGCGKTTLAHVISKKT 144

Query: 79  GVNFRSTSGPVIAKAGDLAALLTN-------LEDRDVLFIDEIHRLSIIVEEILYPAMED 131
           G  F S SG   +KAGD+   +            R ++F+DEIHR + I ++   P +ED
Sbjct: 145 GCKFISLSG-ATSKAGDMKDAVDRARGERKMFRRRTIVFVDEIHRFNKIQQDFFLPPVED 203

Query: 132 FQLDLM--VGEGPSARSVKINLSR 153
             + L+    E PS       LSR
Sbjct: 204 GTITLIGATTENPSFEVNNALLSR 227


>gi|282882872|ref|ZP_06291477.1| replication-associated recombination protein A [Peptoniphilus
           lacrimalis 315-B]
 gi|281297283|gb|EFA89774.1| replication-associated recombination protein A [Peptoniphilus
           lacrimalis 315-B]
          Length = 429

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 85/176 (48%), Gaps = 14/176 (7%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           + +N++ +      LRP+ LEEF GQ       K      K+  + ++ +LF GPPG+GK
Sbjct: 1   MEKNLNNKSPLADRLRPKNLEEFVGQDHIIGQGKFLSRLIKS--DRVNSLLFYGPPGVGK 58

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSII 120
           TTLA+++A     NF   S  V +   +L  +L   +D         ++FIDEIHR +  
Sbjct: 59  TTLAKIIANLTNKNFVELSA-VTSNIKELREVLNKAQDDFKFSNIETIVFIDEIHRFNKT 117

Query: 121 VEEILYPAMEDFQLDLMVG---EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
            ++ L P +E   + +++G   E P     K  LSR  ++  T       N L DR
Sbjct: 118 QQDALLPYVER-GIIILIGATTENPYFEVNKALLSRLQILNLTALENKDMNKLIDR 172


>gi|240143952|ref|ZP_04742553.1| ATPase, AAA family [Roseburia intestinalis L1-82]
 gi|257203986|gb|EEV02271.1| ATPase, AAA family [Roseburia intestinalis L1-82]
 gi|291534968|emb|CBL08080.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [Roseburia intestinalis M50/1]
 gi|291539530|emb|CBL12641.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [Roseburia intestinalis XB6B4]
          Length = 443

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 74/225 (32%), Positives = 97/225 (43%), Gaps = 52/225 (23%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           S LRP TL+E  GQ       K+   A KA  + L  ++  GPPG GKTTLA+V+A    
Sbjct: 20  SRLRPTTLDEMVGQQHIIGKDKLLYRAIKA--DKLSSIILYGPPGTGKTTLAKVIANSTS 77

Query: 80  VNF---RSTSG------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
             F    +TS        VIAKA +   +      + +LFIDEIHR +   ++ L P +E
Sbjct: 78  AEFLQMNATSAGKKDMEDVIAKAKNNMGMFGK---KTILFIDEIHRFNKGQQDYLLPFVE 134

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG------IPIRLNFYE 184
           D                        LI ATT      NP  +  G      I   L   E
Sbjct: 135 D--------------------GTIILIGATTE-----NPYFEVNGALLSRSIIFELKSLE 169

Query: 185 IEDLKTIVQRGAKLT--GL----AVTDEAACE-IAMRSRGTPRIA 222
            ED+KT++ R    T  G+    AV DE A + +A  S G  R A
Sbjct: 170 KEDIKTLILRAVNDTQKGMGAYHAVIDEDALDFLADISNGDARAA 214


>gi|108562846|ref|YP_627162.1| recombination factor protein RarA [Helicobacter pylori HPAG1]
 gi|107836619|gb|ABF84488.1| conserved hypothetical helicase-like protein [Helicobacter pylori
           HPAG1]
          Length = 391

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 65/117 (55%), Gaps = 12/117 (10%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           SLL P++LE+F GQ           +A +++     +  F GPPG+GKT+LAQ++AR L 
Sbjct: 5   SLLNPKSLEDFLGQEHLIGKDAPLFKALQSKH--FPNAFFYGPPGVGKTSLAQIIARSLE 62

Query: 80  ---VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAME 130
              ++F +T      K  DL   L N ++   + V+FIDE HRL+   +E L P ME
Sbjct: 63  RPILSFNATD----FKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115


>gi|331090669|ref|ZP_08339518.1| hypothetical protein HMPREF9477_00161 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330400083|gb|EGG79734.1| hypothetical protein HMPREF9477_00161 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 440

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 70/138 (50%), Gaps = 11/138 (7%)

Query: 2   MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD    +  N  ++++ + S LRP  LEE  GQ       K+   A   RA+ L  ++F 
Sbjct: 1   MDLFEYMRENTKEKESPLASRLRPTKLEEVVGQQHIIGKDKLLYRAI--RADKLSSIIFY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDE 113
           GP G GKTTLA+V+A      F   +  +  K  D+ A++   ++       R +LFIDE
Sbjct: 59  GPSGTGKTTLAKVIANTTSAEFMQMNATIAGKK-DMEAVIEQAKNNLGMYGKRTILFIDE 117

Query: 114 IHRLSIIVEEILYPAMED 131
           IHR +   ++ L P +ED
Sbjct: 118 IHRFNKGQQDYLLPFVED 135


>gi|87301395|ref|ZP_01084236.1| ATPase [Synechococcus sp. WH 5701]
 gi|87284363|gb|EAQ76316.1| ATPase [Synechococcus sp. WH 5701]
          Length = 742

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 52/145 (35%), Positives = 78/145 (53%), Gaps = 12/145 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPR+LEEF GQ E     ++   A   RA+ + +++  GPPG+GKTTLA+++A     +
Sbjct: 23  LRPRSLEEFVGQAEILGPGRLLRRAI--RADRVGNLILHGPPGVGKTTLARIIASSTRAH 80

Query: 82  FRSTSGPVIAKAGDL----AALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F S +  V+A   DL     A    LE    R +LFIDE+HR ++  ++ L P +E+  +
Sbjct: 81  FTSLNA-VLAGVKDLRVEVEAARQRLERHGLRTLLFIDEVHRFNVAQQDALLPWVENGTV 139

Query: 135 DLM--VGEGPSARSVKINLSRFTLI 157
            L+    E P     K  +SR  L 
Sbjct: 140 TLIGATTENPYFEVNKALVSRSRLF 164


>gi|224418782|ref|ZP_03656788.1| recombination factor protein RarA [Helicobacter canadensis MIT
           98-5491]
 gi|253826695|ref|ZP_04869580.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|313142299|ref|ZP_07804492.1| recombination factor protein RarA [Helicobacter canadensis MIT
           98-5491]
 gi|253510101|gb|EES88760.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|313131330|gb|EFR48947.1| recombination factor protein RarA [Helicobacter canadensis MIT
           98-5491]
          Length = 391

 Score = 69.7 bits (169), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 62/114 (54%), Gaps = 6/114 (5%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  ++F GQ         F+   K+    + H  F GPPG GKTT A+++A EL   F
Sbjct: 9   RPKNFQQFIGQKHIFGENSPFMRLLKSGE--IPHSFFFGPPGSGKTTAARLIANELDYPF 66

Query: 83  RSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
            S +     K+ DL  +L   ++   + ++FIDE+HRL+   +E+L P ME+ Q
Sbjct: 67  YSLNATSF-KSEDLRNILKQHQNTLQKPLIFIDEVHRLNKAQQELLLPIMENHQ 119


>gi|295092672|emb|CBK78779.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [Clostridium cf. saccharolyticum K10]
          Length = 452

 Score = 69.7 bits (169), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/136 (34%), Positives = 67/136 (49%), Gaps = 10/136 (7%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           S  + +E    S LRP TL+E  GQ       K+   A KA  + L  V+F GPPG GKT
Sbjct: 9   SSTMEKEAPLASRLRPSTLDEVVGQKHIIGKDKLLYRAIKA--DKLGSVIFYGPPGTGKT 66

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIV 121
           TLA+V+A      F   +     K  D+   +   +D       + +LF+DEIHR +   
Sbjct: 67  TLARVIANTTSARFTQINATTAGKK-DMEEAVKEAKDALGMYGQKTILFVDEIHRFNKSQ 125

Query: 122 EEILYPAMEDFQLDLM 137
           ++ L P +ED  L L+
Sbjct: 126 QDYLLPFVEDGTLILI 141


>gi|283798842|ref|ZP_06347995.1| ATPase, AAA family [Clostridium sp. M62/1]
 gi|291073529|gb|EFE10893.1| ATPase, AAA family [Clostridium sp. M62/1]
          Length = 452

 Score = 69.7 bits (169), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/136 (34%), Positives = 67/136 (49%), Gaps = 10/136 (7%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           S  + +E    S LRP TL+E  GQ       K+   A KA  + L  V+F GPPG GKT
Sbjct: 9   SSTMEKEAPLASRLRPSTLDEVVGQKHIIGKDKLLYRAIKA--DKLGSVIFYGPPGTGKT 66

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIV 121
           TLA+V+A      F   +     K  D+   +   +D       + +LF+DEIHR +   
Sbjct: 67  TLARVIANTTSARFTQINATTAGKK-DMEEAVKEAKDALGMYGQKTILFVDEIHRFNKSQ 125

Query: 122 EEILYPAMEDFQLDLM 137
           ++ L P +ED  L L+
Sbjct: 126 QDYLLPFVEDGTLILI 141


>gi|157414507|ref|YP_001481763.1| recombination factor protein RarA [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|157385471|gb|ABV51786.1| ATPase, AAA family protein [Campylobacter jejuni subsp. jejuni
           81116]
 gi|307747149|gb|ADN90419.1| ATPase, AAA family protein [Campylobacter jejuni subsp. jejuni M1]
 gi|315932005|gb|EFV10958.1| ATPase family associated with various cellular activities (AAA)
           family protein [Campylobacter jejuni subsp. jejuni 327]
          Length = 393

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 44/119 (36%), Positives = 64/119 (53%), Gaps = 9/119 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
            RP   ++  GQ E     K F    K     L H +F G  G GKTT A+VVA+E G++
Sbjct: 7   FRPENFDDILGQYELIEIFKKFTALQK-----LPHSIFFGTAGSGKTTFARVVAKEFGLD 61

Query: 82  FRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           F    G    K  +L  +L N ++   + ++FIDEIHRLS   +E+L   ME+++L L+
Sbjct: 62  FYEFDGGNF-KLEELRKILDNYKNSLYKPLIFIDEIHRLSKTQQEMLLIPMENYRLILI 119


>gi|283955639|ref|ZP_06373132.1| ATPase, AAA family protein [Campylobacter jejuni subsp. jejuni
           1336]
 gi|283792864|gb|EFC31640.1| ATPase, AAA family protein [Campylobacter jejuni subsp. jejuni
           1336]
          Length = 393

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 44/119 (36%), Positives = 64/119 (53%), Gaps = 9/119 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
            RP   ++  GQ E     K F    K     L H +F G  G GKTT A+VVA+E G++
Sbjct: 7   FRPENFDDILGQYELIEIFKKFTALQK-----LPHSIFFGTAGSGKTTFARVVAKEFGLD 61

Query: 82  FRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           F    G    K  +L  +L N ++   + ++FIDEIHRLS   +E+L   ME+++L L+
Sbjct: 62  FYEFDGGNF-KLEELRKILDNYKNSLYKPLIFIDEIHRLSKTQQEMLLIPMENYRLILI 119


>gi|205356556|ref|ZP_03223319.1| helicase like protein [Campylobacter jejuni subsp. jejuni CG8421]
 gi|205345561|gb|EDZ32201.1| helicase like protein [Campylobacter jejuni subsp. jejuni CG8421]
          Length = 393

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 44/119 (36%), Positives = 64/119 (53%), Gaps = 9/119 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
            RP   ++  GQ E     K F    K     L H +F G  G GKTT A+VVA+E G++
Sbjct: 7   FRPENFDDILGQYELIEIFKKFTALQK-----LPHSIFFGTAGSGKTTFARVVAKEFGLD 61

Query: 82  FRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           F    G    K  +L  +L N ++   + ++FIDEIHRLS   +E+L   ME+++L L+
Sbjct: 62  FYEFDGGNF-KLEELRKILDNYKNSLYKPLIFIDEIHRLSKTQQEMLLIPMENYRLILI 119


>gi|153951019|ref|YP_001397445.1| recombination factor protein RarA [Campylobacter jejuni subsp.
           doylei 269.97]
 gi|152938465|gb|ABS43206.1| ATPase, AAA family protein [Campylobacter jejuni subsp. doylei
           269.97]
          Length = 393

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 44/119 (36%), Positives = 64/119 (53%), Gaps = 9/119 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
            RP   ++  GQ E     K F    K     L H +F G  G GKTT A+VVA+E G++
Sbjct: 7   FRPENFDDILGQYELIEIFKKFTALQK-----LPHSIFFGTAGSGKTTFARVVAKEFGLD 61

Query: 82  FRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           F    G    K  +L  +L N ++   + ++FIDEIHRLS   +E+L   ME+++L L+
Sbjct: 62  FYEFDGGNF-KLEELRKILDNYKNSLYKPLIFIDEIHRLSKTQQEMLLIPMENYRLILI 119


>gi|121613547|ref|YP_999917.1| recombination factor protein RarA [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|167004876|ref|ZP_02270634.1| recombination factor protein RarA [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|87250076|gb|EAQ73034.1| ATPase, AAA family protein [Campylobacter jejuni subsp. jejuni
           81-176]
          Length = 393

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 44/119 (36%), Positives = 64/119 (53%), Gaps = 9/119 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
            RP   ++  GQ E     K F    K     L H +F G  G GKTT A+VVA+E G++
Sbjct: 7   FRPENFDDILGQYELIEIFKKFTALQK-----LPHSIFFGTAGSGKTTFARVVAKEFGLD 61

Query: 82  FRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           F    G    K  +L  +L N ++   + ++FIDEIHRLS   +E+L   ME+++L L+
Sbjct: 62  FYEFDGGNF-KLEELRKILDNYKNSLYKPLIFIDEIHRLSKTQQEMLLIPMENYRLILI 119


>gi|86149644|ref|ZP_01067874.1| ATPase, AAA family protein [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|88597357|ref|ZP_01100592.1| ATPase, AAA family protein [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|218561877|ref|YP_002343656.1| recombination factor protein RarA [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|85839912|gb|EAQ57171.1| ATPase, AAA family protein [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|88190418|gb|EAQ94392.1| ATPase, AAA family protein [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|112359583|emb|CAL34367.1| helicase-like protein [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|315928130|gb|EFV07448.1| ATPase family associated with various cellular activities (AAA)
           family protein [Campylobacter jejuni subsp. jejuni
           DFVF1099]
 gi|315930207|gb|EFV09322.1| ATPase family associated with various cellular activities (AAA)
           family protein [Campylobacter jejuni subsp. jejuni 305]
          Length = 393

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 44/119 (36%), Positives = 64/119 (53%), Gaps = 9/119 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
            RP   ++  GQ E     K F    K     L H +F G  G GKTT A+VVA+E G++
Sbjct: 7   FRPENFDDILGQYELIEIFKKFTALQK-----LPHSIFFGTAGSGKTTFARVVAKEFGLD 61

Query: 82  FRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           F    G    K  +L  +L N ++   + ++FIDEIHRLS   +E+L   ME+++L L+
Sbjct: 62  FYEFDGGNF-KLEELRKILDNYKNSLYKPLIFIDEIHRLSKTQQEMLLIPMENYRLILI 119


>gi|328771508|gb|EGF81548.1| hypothetical protein BATDEDRAFT_29838 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 480

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 50/144 (34%), Positives = 73/144 (50%), Gaps = 16/144 (11%)

Query: 21  LLRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           L RP +L EF G    V   S L+  IE+ K        ++  GPPG GKTTLA+++A+E
Sbjct: 97  LARPTSLNEFFGHEAVVGQTSLLRQLIESKKVPC-----MILWGPPGSGKTTLARIIAKE 151

Query: 78  LGVNFRSTSGPV-----IAKAGDLAALLTNLE-DRDVLFIDEIHRLSIIVEEILYPAME- 130
           LGV+F+  S  +     + K+ + A     L   + +LF+DEIHR +   ++   P +E 
Sbjct: 152 LGVHFKEMSATIHNVSDVRKSCEEARTQRKLTGKKSILFLDEIHRFTKAQQDFFLPPVEQ 211

Query: 131 -DFQLDLMVGEGPSARSVKINLSR 153
            +F       E PS R     LSR
Sbjct: 212 GEFTFIAATTENPSFRVNAALLSR 235


>gi|57237203|ref|YP_178215.1| recombination factor protein RarA [Campylobacter jejuni RM1221]
 gi|57166007|gb|AAW34786.1| ATPase, AAA family protein [Campylobacter jejuni RM1221]
 gi|315057635|gb|ADT71964.1| Helicase-like protein [Campylobacter jejuni subsp. jejuni S3]
          Length = 393

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 44/119 (36%), Positives = 64/119 (53%), Gaps = 9/119 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
            RP   ++  GQ E     K F    K     L H +F G  G GKTT A+VVA+E G++
Sbjct: 7   FRPENFDDILGQYELIEIFKKFTALQK-----LPHSIFFGTAGSGKTTFARVVAKEFGLD 61

Query: 82  FRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           F    G    K  +L  +L N ++   + ++FIDEIHRLS   +E+L   ME+++L L+
Sbjct: 62  FYEFDGGNF-KLEELRKILDNYKNSLYKPLIFIDEIHRLSKTQQEMLLIPMENYRLILI 119


>gi|308235719|ref|ZP_07666456.1| recombination factor protein RarA [Gardnerella vaginalis ATCC
           14018]
 gi|311114730|ref|YP_003985951.1| replication-associated recombination protein A [Gardnerella
           vaginalis ATCC 14019]
 gi|310946224|gb|ADP38928.1| replication-associated recombination protein A [Gardnerella
           vaginalis ATCC 14019]
          Length = 457

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 87/187 (46%), Gaps = 35/187 (18%)

Query: 22  LRPRTLEEFTGQVEAC---SNLKVFIE-AAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +RP ++E+  GQ  A    S L+      +K    A   V+  GPPG+GKTTLA +VAR+
Sbjct: 23  MRPSSIEDVLGQSHALKEGSPLRRLANPQSKGSLTAPSSVVLFGPPGVGKTTLAYIVARQ 82

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAME 130
            G  F   S  V +   D+ A+L    +R        VLFIDE+HR S   ++ L P++E
Sbjct: 83  SGRVFEELSA-VTSGVKDVRAVLDRAHERLVSKGQETVLFIDEVHRFSKSQQDALLPSVE 141

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +  +  +    E PS   +K  LSR                      + ++L    +EDL
Sbjct: 142 NRDVTFIGATTENPSFSIIKPLLSR---------------------SVVVKLESLSVEDL 180

Query: 189 KTIVQRG 195
            T+++R 
Sbjct: 181 HTLIERA 187


>gi|86151263|ref|ZP_01069478.1| ATPase, AAA family protein [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|315123797|ref|YP_004065801.1| ATPase, AAA family protein [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|85841610|gb|EAQ58857.1| ATPase, AAA family protein [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|315017519|gb|ADT65612.1| ATPase, AAA family protein [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 393

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 44/119 (36%), Positives = 64/119 (53%), Gaps = 9/119 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
            RP   ++  GQ E     K F    K     L H +F G  G GKTT A+VVA+E G++
Sbjct: 7   FRPENFDDILGQYELIEIFKKFTALQK-----LPHSIFFGTAGSGKTTFARVVAKEFGLD 61

Query: 82  FRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           F    G    K  +L  +L N ++   + ++FIDEIHRLS   +E+L   ME+++L L+
Sbjct: 62  FYEFDGGNF-KLEELRKILDNYKNSLYKPLIFIDEIHRLSKTQQEMLLIPMENYRLILI 119


>gi|326791959|ref|YP_004309780.1| MgsA AAA+ ATPase domain-containing protein [Clostridium lentocellum
           DSM 5427]
 gi|326542723|gb|ADZ84582.1| MgsA AAA+ ATPase domain-containing protein [Clostridium lentocellum
           DSM 5427]
          Length = 440

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 110/235 (46%), Gaps = 35/235 (14%)

Query: 2   MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD    ++     ED+ + S +RP  L E  GQ       K+   A KA  + L  ++F 
Sbjct: 1   MDLFEYINEKKGNEDSPLASRMRPTKLSEIVGQHHLLEEDKLLYRAIKA--DKLQSLIFY 58

Query: 61  GPPGLGKTTLAQVVARELGVNF----RSTSGPV-IAKAGDLAALLTNLE-DRDVLFIDEI 114
           GPPG GKTT+A+V+A     +F     +TSG   I KA + A L  ++   + ++FIDEI
Sbjct: 59  GPPGTGKTTIAKVIANTTKAHFIVLNATTSGKAEIIKAVEDAKLQRSMTGKKTIIFIDEI 118

Query: 115 HRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRF 174
           HR +   ++ L P  ED  L L+   G +  +    ++R  LI+ +    L   PL    
Sbjct: 119 HRFNKAQQDALLPYTEDGTLVLI---GATTENPYFEVNR-ALISRSLVFEL--KPL---- 168

Query: 175 GIPIRLNFYEIEDLKTIV-------QRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
                    E +D+K I+       +RG       VT++A   +AMR+ G  R A
Sbjct: 169 ---------ETDDVKKIIKEAVYNKERGLGAYKADVTEDALDYLAMRTAGDARNA 214


>gi|284925490|gb|ADC27842.1| recombination factor protein RarA [Campylobacter jejuni subsp.
           jejuni IA3902]
          Length = 393

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 44/119 (36%), Positives = 64/119 (53%), Gaps = 9/119 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
            RP   ++  GQ E     K F    K     L H +F G  G GKTT A+VVA+E G++
Sbjct: 7   FRPENFDDILGQYELIEIFKKFTALQK-----LPHSIFFGTAGSGKTTFARVVAKEFGLD 61

Query: 82  FRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           F    G    K  +L  +L N ++   + ++FIDEIHRLS   +E+L   ME+++L L+
Sbjct: 62  FYEFDGGNF-KLEELRKILDNYKNSLYKPLIFIDEIHRLSKTQQEMLLIPMENYRLILI 119


>gi|86153728|ref|ZP_01071931.1| ATPase, AAA family protein [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|85842689|gb|EAQ59901.1| ATPase, AAA family protein [Campylobacter jejuni subsp. jejuni
           HB93-13]
          Length = 393

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 44/119 (36%), Positives = 64/119 (53%), Gaps = 9/119 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
            RP   ++  GQ E     K F    K     L H +F G  G GKTT A+VVA+E G++
Sbjct: 7   FRPENFDDILGQYELIEIFKKFTALQK-----LPHSIFFGTAGSGKTTFARVVAKEFGLD 61

Query: 82  FRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           F    G    K  +L  +L N ++   + ++FIDEIHRLS   +E+L   ME+++L L+
Sbjct: 62  FYEFDGGNF-KLEELRKILDNYKNSLYKPLIFIDEIHRLSKTQQEMLLIPMENYRLILI 119


>gi|317012260|gb|ADU82868.1| recombination factor protein RarA [Helicobacter pylori Lithuania75]
          Length = 391

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 45/117 (38%), Positives = 63/117 (53%), Gaps = 12/117 (10%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           SLL P +LE+F GQ           +A +++     H  F GPPG+GKT+LAQ++AR L 
Sbjct: 5   SLLNPTSLEDFLGQEHLIGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIARSLE 62

Query: 80  ---VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAME 130
              + F +T      K  DL   L N ++   + V+FIDE HRL+   +E L P ME
Sbjct: 63  RPILLFNATD----FKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115


>gi|87308504|ref|ZP_01090644.1| hypothetical protein DSM3645_14130 [Blastopirellula marina DSM
           3645]
 gi|87288596|gb|EAQ80490.1| hypothetical protein DSM3645_14130 [Blastopirellula marina DSM
           3645]
          Length = 461

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 45/117 (38%), Positives = 63/117 (53%), Gaps = 10/117 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP TL EF GQ       K+     +A  + L+ VLF GPPG GKTTLAQ++ARE    
Sbjct: 34  MRPHTLAEFAGQTHFLGEGKLLRRLIQA--DRLNSVLFYGPPGTGKTTLAQLLARECRSR 91

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131
           F   +  V +   +L  +L   +D       R +LFIDEIHR +   ++ L P +E+
Sbjct: 92  FEQLNA-VTSGVKELREVLQKAKDEIAVGGRRTLLFIDEIHRFNKSQQDALLPDVEN 147


>gi|312870086|ref|ZP_07730222.1| replication-associated recombination protein A [Lactobacillus oris
           PB013-T2-3]
 gi|311094389|gb|EFQ52697.1| replication-associated recombination protein A [Lactobacillus oris
           PB013-T2-3]
          Length = 441

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 88/172 (51%), Gaps = 16/172 (9%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M +E L +++ S      + +RP TL EF GQ       +V  E  +   + L  ++F G
Sbjct: 1   MHQESLFAQSNSGATPLANRVRPSTLAEFVGQQHLIGPHRVLRELIEN--DQLSSLIFWG 58

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIH 115
           PPG+GKTTLA+++A++   +F + S  V +   D+  L+   E      +R + FIDEIH
Sbjct: 59  PPGVGKTTLAEIIAQQTKAHFVTFSA-VTSSIKDIRKLMQEAEQNREYGERTICFIDEIH 117

Query: 116 RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN---LSR---FTLIAATT 161
           R +   ++   P +E   + +++G      S +IN   LSR   F L + TT
Sbjct: 118 RFNKAQQDAFLPFVERGSI-ILIGATTENPSFEINSALLSRCKVFVLKSLTT 168


>gi|167756420|ref|ZP_02428547.1| hypothetical protein CLORAM_01953 [Clostridium ramosum DSM 1402]
 gi|167703828|gb|EDS18407.1| hypothetical protein CLORAM_01953 [Clostridium ramosum DSM 1402]
          Length = 444

 Score = 69.7 bits (169), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 76/283 (26%), Positives = 130/283 (45%), Gaps = 44/283 (15%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MM ++  + +N+S E    + LRP TL E+ GQ       K+  +     ++ +  ++F 
Sbjct: 4   MMMKQQAMFKNMSNEPL-ANRLRPTTLTEYVGQRHLIGPGKILYQLI--NSDVVPSMVFW 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLT------NLEDRDVLFIDEI 114
           GPPG+GKTTLA+++A +    F + S  V +   D+ A++       +L ++ ++F+DEI
Sbjct: 61  GPPGVGKTTLARIIANQTKAKFINFSA-VTSGIKDIRAVMKQAQEVQDLGEKTIVFVDEI 119

Query: 115 HRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN---LSR---FTLIAATTRVGLLTN 168
           HR +   ++   P +E   + +++G      S +IN   LSR   F L A TT       
Sbjct: 120 HRFNKAQQDAFLPYVEQGSI-ILIGATTENPSFEINSALLSRCKVFVLKALTT------- 171

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
              D FG+   L++        I  +G K   + + D+    IA  S G  R+A   L  
Sbjct: 172 --DDLFGL---LHY------ALISPKGFKDQNVMIDDDLLYMIAGFSNGDARVALNTLEM 220

Query: 229 VRDFAEVAH------AKTITREIADAALLRLAIDKMGFDQLDL 265
                 + H       +TI + I   +LL    DK G +  ++
Sbjct: 221 AVLNGAITHDRIVVDKETIEQCINQKSLL---YDKKGEEHYNI 260


>gi|317050664|ref|YP_004111780.1| AAA ATPase central domain-containing protein [Desulfurispirillum
           indicum S5]
 gi|316945748|gb|ADU65224.1| AAA ATPase central domain protein [Desulfurispirillum indicum S5]
          Length = 420

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 103/236 (43%), Gaps = 44/236 (18%)

Query: 22  LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP    +F GQ       S L+  +E  K     L   +F GPPG GKTTLA ++++  
Sbjct: 17  LRPTDFADFVGQRHLLGERSLLRRMVEEDK-----LVSAIFTGPPGTGKTTLAHIISQRT 71

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131
             +F +T   V A   D+ A+  + ++       R VLFIDEIHR + I ++ L P +E 
Sbjct: 72  QSHF-ATLNAVNAGTADIRAICKDAKELRLHQGQRTVLFIDEIHRFNKIQQDALLPEVES 130

Query: 132 FQLDLMVG---EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
             + +++G   + PS   V   LSR  L                       L+  + ED+
Sbjct: 131 GNI-ILIGASTQNPSFALVPALLSRTVL---------------------FELHALDDEDM 168

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
             +V+RG    G+ + DEA   I     G  R   R L  +   A +     ITR+
Sbjct: 169 GRLVERGCAELGVTMDDEAREAIMTLCSGDGR---RCLNTIEAAALLCQGNHITRQ 221


>gi|154484609|ref|ZP_02027057.1| hypothetical protein EUBVEN_02325 [Eubacterium ventriosum ATCC
           27560]
 gi|149734457|gb|EDM50374.1| hypothetical protein EUBVEN_02325 [Eubacterium ventriosum ATCC
           27560]
          Length = 439

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 67/130 (51%), Gaps = 10/130 (7%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           S N  +E    S LRP+TL++  GQ       K+   A KA  + +  ++F GPPG GKT
Sbjct: 9   SVNSEKESPLASRLRPKTLDQVVGQEHIIGKDKLLYRAIKA--DKISSIIFYGPPGTGKT 66

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIV 121
           TLA+V+A     +F   +  V  K  D+  ++   +        + +LF+DEIHR +   
Sbjct: 67  TLAKVIANTTSADFMQLNATVAGKK-DMEDVVAKAKQNMAMSGRKTILFVDEIHRFNKGQ 125

Query: 122 EEILYPAMED 131
           ++ L P +ED
Sbjct: 126 QDYLLPFVED 135


>gi|313681270|ref|YP_004059008.1| recombination protein mgsa [Sulfuricurvum kujiense DSM 16994]
 gi|313154130|gb|ADR32808.1| Recombination protein MgsA [Sulfuricurvum kujiense DSM 16994]
          Length = 392

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 65/121 (53%), Gaps = 13/121 (10%)

Query: 17  ADIS-LLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           AD++ LLRP+  ++  GQ   CS    L+   E        L H  F GPPG GKTTLA+
Sbjct: 2   ADLTYLLRPKKFDDVVGQPHLCSPDSPLRSLCENGN-----LTHSFFYGPPGCGKTTLAR 56

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAM 129
           ++A  +G+ F   +   + K   L  +    E+   + ++FIDE+HRL+   +E+L P M
Sbjct: 57  IIAEVMGLPFYEFNATSL-KIEQLRKIFDQYENSLTKPLIFIDEVHRLAKNQQEVLLPVM 115

Query: 130 E 130
           E
Sbjct: 116 E 116


>gi|86741903|ref|YP_482303.1| recombination factor protein RarA [Frankia sp. CcI3]
 gi|86568765|gb|ABD12574.1| Recombination protein MgsA [Frankia sp. CcI3]
          Length = 519

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 46/119 (38%), Positives = 63/119 (52%), Gaps = 16/119 (13%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPRTL+E  GQ   +   S L+  +E       A   V+  GPPG GKTTLA +V+R  
Sbjct: 57  LRPRTLDEVVGQRHLLGPGSPLRRLVEGG-----ATTSVVLWGPPGTGKTTLAHIVSRAT 111

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAME 130
           G  FR  S  V A   D+ A++    +       R VLFIDE+HR +   ++ L P++E
Sbjct: 112 GRRFRELSA-VTAGVKDVRAVIDEARETLSTSGARTVLFIDEVHRFTRTQQDALLPSVE 169


>gi|283783289|ref|YP_003374043.1| recombination factor protein RarA [Gardnerella vaginalis 409-05]
 gi|283441280|gb|ADB13746.1| recombination factor protein RarA [Gardnerella vaginalis 409-05]
          Length = 462

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 87/187 (46%), Gaps = 35/187 (18%)

Query: 22  LRPRTLEEFTGQVEAC---SNLKVFIE-AAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +RP ++E+  GQ  A    S L+      +K    A   V+  GPPG+GKTTLA +VAR+
Sbjct: 23  MRPSSIEDVLGQSHALKEGSPLRRLANPQSKGSLTAPSSVVLFGPPGVGKTTLAYIVARQ 82

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAME 130
            G  F   S  V +   D+ A+L    +R        VLFIDE+HR S   ++ L P++E
Sbjct: 83  SGRVFEELSA-VTSGVKDVRAVLDRAHERLVSNGQETVLFIDEVHRFSKSQQDALLPSVE 141

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +  +  +    E PS   +K  LSR                      + ++L    +EDL
Sbjct: 142 NRDVTFIGATTENPSFSIIKPLLSR---------------------SVVVKLASLSVEDL 180

Query: 189 KTIVQRG 195
            T+++R 
Sbjct: 181 HTLIERA 187


>gi|261839269|gb|ACX99034.1| recombination factor protein RarA [Helicobacter pylori 52]
          Length = 391

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 45/117 (38%), Positives = 64/117 (54%), Gaps = 12/117 (10%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           SLL P++LE+F GQ           +A +++     H  F GPPG+GKT+LAQ++AR L 
Sbjct: 5   SLLNPKSLEDFLGQEHLIGKDAPLFKALQSKH--FLHAFFYGPPGVGKTSLAQIIARMLE 62

Query: 80  ---VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAME 130
              + F +T      K  DL   L N ++   + V+FIDE HRL+   +E L P ME
Sbjct: 63  RPILLFNATD----FKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115


>gi|317180683|dbj|BAJ58469.1| recombination factor protein RarA [Helicobacter pylori F32]
          Length = 391

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 45/117 (38%), Positives = 63/117 (53%), Gaps = 12/117 (10%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           SLL P++LE+F GQ           +A +++     H  F GPPG+GKT+LAQ++AR L 
Sbjct: 5   SLLNPKSLEDFLGQEHLIGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIARMLE 62

Query: 80  ---VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAME 130
              + F +T      K  DL   L N +    + V+FIDE HRL+   +E L P ME
Sbjct: 63  RPILLFNATD----FKLEDLRLKLKNYQHTLLKPVVFIDETHRLNKTQQEFLLPIME 115


>gi|298252773|ref|ZP_06976567.1| helicase subunit of the Holliday junction resolvase-like ATPase
           [Gardnerella vaginalis 5-1]
 gi|297533137|gb|EFH72021.1| helicase subunit of the Holliday junction resolvase-like ATPase
           [Gardnerella vaginalis 5-1]
          Length = 462

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 87/187 (46%), Gaps = 35/187 (18%)

Query: 22  LRPRTLEEFTGQVEAC---SNLKVFIE-AAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +RP ++E+  GQ  A    S L+      +K    A   V+  GPPG+GKTTLA +VAR+
Sbjct: 23  MRPSSIEDVLGQSHALKEGSPLRRLANPQSKGSLTAPSSVVLFGPPGVGKTTLAYIVARQ 82

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAME 130
            G  F   S  V +   D+ A+L    +R        VLFIDE+HR S   ++ L P++E
Sbjct: 83  SGRVFEELSA-VTSGVKDVRAVLDRAHERLVSNGQETVLFIDEVHRFSKSQQDALLPSVE 141

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +  +  +    E PS   +K  LSR                      + ++L    +EDL
Sbjct: 142 NRDVTFIGATTENPSFSIIKPLLSR---------------------SVVVKLASLSVEDL 180

Query: 189 KTIVQRG 195
            T+++R 
Sbjct: 181 HTLIERA 187


>gi|227889971|ref|ZP_04007776.1| crossover junction endodeoxyribonuclease [Lactobacillus johnsonii
           ATCC 33200]
 gi|227849415|gb|EEJ59501.1| crossover junction endodeoxyribonuclease [Lactobacillus johnsonii
           ATCC 33200]
          Length = 426

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 111/279 (39%), Gaps = 52/279 (18%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           L+RP+ L +F GQ +  S  K   +  K        +L  GPPG GKT+LAQ++ARE   
Sbjct: 10  LIRPKNLSQFVGQTKLISEGKPLYQIIKNHVPI--SLLLWGPPGTGKTSLAQIIAREYDY 67

Query: 81  NFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
              + +  +  KA  +  + T      VL IDEIHR++  +++ L P +E          
Sbjct: 68  PLATFNASIDNKAKLMQIINTYPYQSFVLLIDEIHRMTTTLQDYLLPYLES--------- 118

Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRF-GIPIRLNFYEIE-----DLKTIVQR 194
                       +  LI ATT      NP+      +  R   +E E     D+  ++ R
Sbjct: 119 -----------GKILLIGATTE-----NPIMSIVPAVRSRCQIFEFETLDDKDISEVLVR 162

Query: 195 GAK----LTGLAVTDEAACEIAMRSRGTPRIAGRLL-------------RRVRDFAEVAH 237
             K    L    +  EA   IA  + G  R+A  LL             + V++F +  H
Sbjct: 163 ALKEVFHLDEKQIDKEAINIIARSADGDLRVALNLLETIQAVNGEEISVKNVKEFLKGQH 222

Query: 238 AKTITREIADAALLRLAIDKMGFDQLD--LRYLTMIARN 274
                +       L    D M     D  L YLT++ +N
Sbjct: 223 FAYDRKATKHYDYLAAYSDSMAGSDTDAALYYLTVLLKN 261


>gi|283455715|ref|YP_003360279.1| AAA family ATPase [Bifidobacterium dentium Bd1]
 gi|283102349|gb|ADB09455.1| AAA family ATPase [Bifidobacterium dentium Bd1]
          Length = 467

 Score = 69.3 bits (168), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 94/208 (45%), Gaps = 42/208 (20%)

Query: 22  LRPRTLEEFTGQV----EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +RP T++E  GQ     E     ++   A++    A   ++  GPPG+GKTTLA +VA++
Sbjct: 32  MRPSTVDEVVGQGRVLGEGSPLRRLANPASRKSLTAPSSIILFGPPGVGKTTLAYIVAKQ 91

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAME 130
            G  F   S  V +   D+  +L    DR        VLFIDE+HR S   ++ L P++E
Sbjct: 92  SGRVFEELSA-VTSGVKDVRDVLKRAHDRLVAEGKETVLFIDEVHRFSKSQQDALLPSVE 150

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT--NPLQDRFGIPIRLNFYEIEDL 188
           +  +                    T IAATT     +   PL  R  + ++L   E +DL
Sbjct: 151 NRDV--------------------TFIAATTENPSFSVIKPLLSR-SVVVKLESLEPDDL 189

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSR 216
           +T++ R       AV DE      +R R
Sbjct: 190 RTLINR-------AVEDERGLNNEVRIR 210


>gi|242279432|ref|YP_002991561.1| recombination factor protein RarA [Desulfovibrio salexigens DSM
           2638]
 gi|242122326|gb|ACS80022.1| AAA ATPase central domain protein [Desulfovibrio salexigens DSM
           2638]
          Length = 420

 Score = 68.9 bits (167), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 75/138 (54%), Gaps = 11/138 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ ++EF GQ    ++++  +EA + R++ L  +L  GPPG GK+TLA ++A+  G +
Sbjct: 15  IRPKKIDEFFGQ----NHIRERVEAFE-RSKRLPSLLLFGPPGCGKSTLAMLLAKSTGRH 69

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VG 139
           F   S P       + AL   L   D+L +DE+HR S   ++   P +E  ++ L+    
Sbjct: 70  FMRISAP----ESGITALRKQLAGMDILILDELHRFSKAQQDFFLPILESGEITLLATTT 125

Query: 140 EGPSARSVKINLSRFTLI 157
           E PS    +  LSR  ++
Sbjct: 126 ENPSFSVTRQLLSRLHVL 143


>gi|283955370|ref|ZP_06372869.1| ATPase, AAA family protein [Campylobacter jejuni subsp. jejuni 414]
 gi|283793130|gb|EFC31900.1| ATPase, AAA family protein [Campylobacter jejuni subsp. jejuni 414]
          Length = 391

 Score = 68.9 bits (167), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 44/119 (36%), Positives = 64/119 (53%), Gaps = 9/119 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
            RP   ++  GQ E     K F    K     L H +F G  G GKTT A+VVA+E G++
Sbjct: 7   FRPENFDDILGQYELIEIFKKFTALQK-----LPHSIFFGIAGSGKTTFARVVAKEFGLD 61

Query: 82  FRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           F    G    K  +L  +L N ++   + ++FIDEIHRLS   +E+L   ME+++L L+
Sbjct: 62  FYEFDGGNF-KLEELRKILDNYKNSLYKPLIFIDEIHRLSKTQQEMLLIPMENYRLILI 119


>gi|94969641|ref|YP_591689.1| recombination factor protein RarA [Candidatus Koribacter versatilis
           Ellin345]
 gi|94551691|gb|ABF41615.1| Recombination protein MgsA [Candidatus Koribacter versatilis
           Ellin345]
          Length = 447

 Score = 68.9 bits (167), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 79/273 (28%), Positives = 117/273 (42%), Gaps = 46/273 (16%)

Query: 14  QEDADISL---LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           Q D D  L   +RPRTL+EF GQ   +     L+V I+      + +  ++F GPPG+GK
Sbjct: 11  QSDRDRPLADRMRPRTLDEFAGQEHILAPGKPLRVQIDR-----DDIGSLIFWGPPGVGK 65

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIV 121
           TTLA+++A     +F   S  V++   ++  ++ + E       R +LF+DEIHR +   
Sbjct: 66  TTLAKIIAAMTHADFIEFSA-VLSGIKEIKQVMADAERVRQYGTRTILFVDEIHRFNRAQ 124

Query: 122 EEILYPAMEDFQLDLM--VGEGPSARSVKINLSR---FTLIAATTR--VGLLTNPLQDRF 174
           ++   P +E   + L+    E PS       LSR   +TL   T    VGLL   L D  
Sbjct: 125 QDAFLPHVERGNIKLIGATTENPSFEVNSALLSRSRVYTLTPLTEEQIVGLLRRALTD-- 182

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
                             +RG     +   D A   IA  + G  R    +L      A 
Sbjct: 183 -----------------TERGLAELHVTAEDIALARIAAYASGDARSGYNVLEVAAQAAG 225

Query: 235 VAHAKTITREIADAALLR--LAIDKMGFDQLDL 265
               + IT +I   AL R  L  DK G +  +L
Sbjct: 226 ATSERIITEQIVADALQRRVLRYDKSGEEHYNL 258


>gi|331001822|ref|ZP_08325344.1| hypothetical protein HMPREF0491_00206 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412796|gb|EGG92179.1| hypothetical protein HMPREF0491_00206 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 441

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 64/125 (51%), Gaps = 9/125 (7%)

Query: 14  QEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           +EDA + S LRP +L+   GQ       K    A KA  + L  ++F GPPG GKTT+A+
Sbjct: 13  KEDAPLASRLRPDSLDSIVGQEHILGKDKFLYRAIKA--DKLSSIIFFGPPGCGKTTIAK 70

Query: 73  VVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           V+A     NF+  +  +  K        +     +  + + +LFIDEIHR +   ++ L 
Sbjct: 71  VIANTTKSNFKQINATMAGKKEMEEAVSEAKISFSMYKKKTILFIDEIHRFNKSQQDYLL 130

Query: 127 PAMED 131
           P +ED
Sbjct: 131 PFVED 135


>gi|168701195|ref|ZP_02733472.1| recombination factor protein RarA [Gemmata obscuriglobus UQM 2246]
          Length = 449

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/117 (35%), Positives = 64/117 (54%), Gaps = 10/117 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRTL+E+ GQ    +  K+        A+ L+ ++F GPPG GKT LA V+A+     
Sbjct: 22  MRPRTLDEYVGQTHFLAPGKLLRRML--LADRLNSLIFYGPPGCGKTALAHVIAKHTKSR 79

Query: 82  FRSTSGPVIAKAGDLAALLT-------NLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
           F+  +  V A   D+  LL         L +R +LF+DEIHR +   +++L P +ED
Sbjct: 80  FKPLNA-VAAGTKDVRELLAEARGHLEELGERTILFLDEIHRFNRAQQDVLLPDVED 135


>gi|306823257|ref|ZP_07456633.1| replication-associated recombination protein A [Bifidobacterium
           dentium ATCC 27679]
 gi|309801882|ref|ZP_07695997.1| recombination factor protein RarA [Bifidobacterium dentium
           JCVIHMP022]
 gi|304553889|gb|EFM41800.1| replication-associated recombination protein A [Bifidobacterium
           dentium ATCC 27679]
 gi|308221438|gb|EFO77735.1| recombination factor protein RarA [Bifidobacterium dentium
           JCVIHMP022]
          Length = 458

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 94/208 (45%), Gaps = 42/208 (20%)

Query: 22  LRPRTLEEFTGQV----EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +RP T++E  GQ     E     ++   A++    A   ++  GPPG+GKTTLA +VA++
Sbjct: 23  MRPSTVDEVVGQGRVLGEGSPLRRLANPASRKSLTAPSSIILFGPPGVGKTTLAYIVAKQ 82

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAME 130
            G  F   S  V +   D+  +L    DR        VLFIDE+HR S   ++ L P++E
Sbjct: 83  SGRVFEELSA-VTSGVKDVRDVLKRAHDRLVAEGRETVLFIDEVHRFSKSQQDALLPSVE 141

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT--NPLQDRFGIPIRLNFYEIEDL 188
           +  +                    T IAATT     +   PL  R  + ++L   E +DL
Sbjct: 142 NRDV--------------------TFIAATTENPSFSVIKPLLSR-SVVVKLESLEPDDL 180

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSR 216
           +T++ R       AV DE      +R R
Sbjct: 181 RTLINR-------AVEDERGLNNEVRIR 201


>gi|258515784|ref|YP_003192006.1| recombination factor protein RarA [Desulfotomaculum acetoxidans DSM
           771]
 gi|257779489|gb|ACV63383.1| AAA ATPase central domain protein [Desulfotomaculum acetoxidans DSM
           771]
          Length = 422

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 92/187 (49%), Gaps = 25/187 (13%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVG 61
           E  + R++++     + +RP++LEEF  Q   V   + L+  IE      ++L  ++F G
Sbjct: 5   EHAMERDMAKAAPLAARMRPKSLEEFEEQSTIVGPGTTLRRSIEN-----DSLMSMIFFG 59

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEI 114
           PPG GKT LA ++A     +F + +  V+A  GD+  ++   + R        VLFIDEI
Sbjct: 60  PPGTGKTALANIIASMTKSHFETINA-VMAGVGDIRRVVDEAQKRRSYYGEKTVLFIDEI 118

Query: 115 HRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN--------LSRFTLIAATTRVGLL 166
           HR +   ++ L P +E+  L  ++G         +N        L RF L++    V LL
Sbjct: 119 HRFNKAQQDALLPFVEN-GLITLIGSTTENPMFSVNRPILSRSQLYRFELLSTEAIVRLL 177

Query: 167 TNPLQDR 173
              LQDR
Sbjct: 178 QRALQDR 184


>gi|167948214|ref|ZP_02535288.1| Holliday junction DNA helicase B [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 76

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 28/56 (50%), Positives = 41/56 (73%)

Query: 274 NFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
            F GGPVG++ ++A + E R  IED++EP++IQQGF+ RTPRGR+    A+ H G+
Sbjct: 4   KFDGGPVGVDNLAAAIGEERGTIEDVLEPFLIQQGFMMRTPRGRVATQAAYLHFGL 59


>gi|317013863|gb|ADU81299.1| recombination factor protein RarA [Helicobacter pylori Gambia94/24]
          Length = 391

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 62/117 (52%), Gaps = 12/117 (10%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +LL P +LE+F GQ           +A +++     H  F GPPG+GKT+LAQ++AR L 
Sbjct: 5   ALLNPTSLEDFLGQEHLIGKDTPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIARSLE 62

Query: 80  VN---FRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAME 130
                F +T      K  DL   L N ++   + V+FIDE HRL+   +E L P ME
Sbjct: 63  CPILLFNATD----FKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115


>gi|269218537|ref|ZP_06162391.1| replication-associated recombination protein A [Actinomyces sp.
           oral taxon 848 str. F0332]
 gi|269211648|gb|EEZ77988.1| replication-associated recombination protein A [Actinomyces sp.
           oral taxon 848 str. F0332]
          Length = 456

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 72/218 (33%), Positives = 101/218 (46%), Gaps = 24/218 (11%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRTL+E  GQ    +        A+A   A   V   GPPG GKTT A ++AR    +
Sbjct: 36  MRPRTLDEVVGQGHLLAEGSPLRRLAEASGGAPSSVFLWGPPGTGKTTFAYLIARAGNRH 95

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F   S  V A   +L A+++    R        VLF+DE+HR +   ++ L PA+E+  +
Sbjct: 96  FEEVSA-VSAGVKELRAVVSAARQRLATSGRETVLFVDEVHRFNRAQQDALLPAVENGWV 154

Query: 135 DLMVG--EGPSARSVKINLSRFTLI-----AATTRVGLLTNPLQDRFGIPIRLNFY--EI 185
            L+    E PS   V   LSR  L+     A      L+   L+D  G   RL+     +
Sbjct: 155 TLVAATTENPSFTVVSPLLSRSLLVTLKGLAEEDIRTLVARALEDERGFAGRLSIAADAL 214

Query: 186 EDLKTIVQRGAK--LTGLAVTDEAACEIAMRSRGTPRI 221
           ++L  I  R  +  LT L    EAA E A R+RG   I
Sbjct: 215 DNLVRIAGRDGRRSLTLL----EAAAEGA-RTRGETTI 247


>gi|171743312|ref|ZP_02919119.1| hypothetical protein BIFDEN_02443 [Bifidobacterium dentium ATCC
           27678]
 gi|171278926|gb|EDT46587.1| hypothetical protein BIFDEN_02443 [Bifidobacterium dentium ATCC
           27678]
          Length = 458

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 94/208 (45%), Gaps = 42/208 (20%)

Query: 22  LRPRTLEEFTGQV----EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +RP T++E  GQ     E     ++   A++    A   ++  GPPG+GKTTLA +VA++
Sbjct: 23  MRPSTVDEVVGQGRVLGEGSPLRRLANPASRKSLTAPSSIILFGPPGVGKTTLAYIVAKQ 82

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAME 130
            G  F   S  V +   D+  +L    DR        VLFIDE+HR S   ++ L P++E
Sbjct: 83  SGRVFEELSA-VTSGVKDVRDVLKRAHDRLVAEGKETVLFIDEVHRFSKSQQDALLPSVE 141

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT--NPLQDRFGIPIRLNFYEIEDL 188
           +  +                    T IAATT     +   PL  R  + ++L   E +DL
Sbjct: 142 NRDV--------------------TFIAATTENPSFSVIKPLLSR-SVVVKLESLEPDDL 180

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSR 216
           +T++ R       AV DE      +R R
Sbjct: 181 RTLINR-------AVEDERGLNNEVRIR 201


>gi|302680609|ref|XP_003029986.1| hypothetical protein SCHCODRAFT_57429 [Schizophyllum commune H4-8]
 gi|300103677|gb|EFI95083.1| hypothetical protein SCHCODRAFT_57429 [Schizophyllum commune H4-8]
          Length = 552

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/141 (34%), Positives = 71/141 (50%), Gaps = 12/141 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP TL EF GQ    ++  + +      A     ++F GPPG GKTTLA+++A+  G  
Sbjct: 88  LRPSTLAEFVGQAHLTASDSLLMSTISNGAAG--SMIFWGPPGCGKTTLARLIAKHTGSI 145

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           FR  S    A   D+ A+    ++       + VLF+DEIHR +   ++I  P +E   +
Sbjct: 146 FRELSA-TEAGIKDVRAVFEEAKNTLMLTGRKSVLFLDEIHRFNKAQQDIFLPYVEQGYI 204

Query: 135 DLM--VGEGPSARSVKINLSR 153
            L+    E PS + V   LSR
Sbjct: 205 QLIGATTENPSFKLVSPLLSR 225


>gi|255725414|ref|XP_002547636.1| predicted protein [Candida tropicalis MYA-3404]
 gi|240135527|gb|EER35081.1| predicted protein [Candida tropicalis MYA-3404]
          Length = 498

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 75/132 (56%), Gaps = 11/132 (8%)

Query: 22  LRPRTLEEFTGQ----VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +RP T EE+ GQ     +   ++  FI+        L  ++F+GPPG+GKTTLA V++ E
Sbjct: 31  IRPTTFEEYVGQDHLLNQQNGSIFTFIKLG-----YLPSMIFLGPPGVGKTTLASVISYE 85

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
             + F   S   +   G+L  +    E++ V+FIDEIHRL+ + ++ L P +E+ ++ ++
Sbjct: 86  CKLPFIELSATTLT-TGELKQIAMMHEEQIVVFIDEIHRLTKVQQDWLLPYVENGKM-VL 143

Query: 138 VGEGPSARSVKI 149
           +G   S  S +I
Sbjct: 144 IGATTSHPSKRI 155


>gi|78183967|ref|YP_376402.1| recombination factor protein RarA/unknown domain fusion protein
           [Synechococcus sp. CC9902]
 gi|78168261|gb|ABB25358.1| Recombination protein MgsA [Synechococcus sp. CC9902]
          Length = 733

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 69/123 (56%), Gaps = 10/123 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRTLEEF GQ    +  ++   A KA  + + +++  GPPG+GKTTLA++VA     +
Sbjct: 25  MRPRTLEEFEGQQGILAEGRLLQRAIKA--DRVGNLILHGPPGVGKTTLARIVANHTRAH 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F S    V+A   DL A +   +        R +LFIDE+HR +   ++ L P +E+  +
Sbjct: 83  F-SNLNAVLAGVKDLRAEVDAAQQRLERHGLRTILFIDEVHRFNSAQQDALLPWVENGTV 141

Query: 135 DLM 137
            L+
Sbjct: 142 TLI 144


>gi|313902377|ref|ZP_07835780.1| Recombination protein MgsA [Thermaerobacter subterraneus DSM 13965]
 gi|313467308|gb|EFR62819.1| Recombination protein MgsA [Thermaerobacter subterraneus DSM 13965]
          Length = 513

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 63/116 (54%), Gaps = 10/116 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRTLEEF GQ       ++   A +A  + L  ++  GPPG GKTTLA+++AR    +
Sbjct: 37  MRPRTLEEFVGQQHLVGPGRLLRRAIEA--DRLGSIILWGPPGSGKTTLARIIARTTRAH 94

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAME 130
           F   +  V A  GDL  ++    +R        VLF+DE+HR +   ++ L P +E
Sbjct: 95  FEPLNA-VTAGVGDLRRVVEEARERWALEGRSTVLFVDEVHRWNRAQQDALLPHLE 149


>gi|310828857|ref|YP_003961214.1| hypothetical protein ELI_3289 [Eubacterium limosum KIST612]
 gi|308740591|gb|ADO38251.1| hypothetical protein ELI_3289 [Eubacterium limosum KIST612]
          Length = 446

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 83/162 (51%), Gaps = 15/162 (9%)

Query: 11  NVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           N  +++A +S+ +RP TL+EF GQ       K+     +A  + L  V+F GPPG GKTT
Sbjct: 12  NQIEDNAPLSVRMRPTTLDEFVGQTHIIGKGKLLYRLIEA--DKLSSVVFYGPPGTGKTT 69

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVE 122
           LA+++A      F   +  V +   ++  +L   +D       + +LFIDEIHR +   +
Sbjct: 70  LAKIIAHRTQAAFYELNA-VTSGKKEITEILDKAKDNLGIYNRKSILFIDEIHRFNKAQQ 128

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKIN---LSRFTLIAATT 161
           + L P++E   L +++G        +IN   LSR T+    T
Sbjct: 129 DALLPSVEG-GLVILIGATTENPYFEINSPLLSRSTIFEFKT 169


>gi|224282759|ref|ZP_03646081.1| recombination factor protein RarA [Bifidobacterium bifidum NCIMB
           41171]
 gi|313139919|ref|ZP_07802112.1| recombination factor protein RarA [Bifidobacterium bifidum NCIMB
           41171]
 gi|313132429|gb|EFR50046.1| recombination factor protein RarA [Bifidobacterium bifidum NCIMB
           41171]
          Length = 468

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 82/279 (29%), Positives = 119/279 (42%), Gaps = 65/279 (23%)

Query: 22  LRPRTLEEFTGQV----EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +RPRT++E  GQ     E     ++   ++K    A   ++  GPPG+GKTTLA +VAR+
Sbjct: 24  MRPRTVDEVLGQSHVLGEGSPLRRLANPSSKGSLTAPSSIIMFGPPGVGKTTLATIVARQ 83

Query: 78  LGVNFRS----TSGPVIAKAGDLAAL----LTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
            G  F      TSG  +    D+ AL    L       VLF+DE+HR S   ++ L PA+
Sbjct: 84  SGRAFEELSAVTSG--VKDVRDVLALARRRLVGDGTETVLFVDEVHRFSKSQQDALLPAV 141

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E+  +  +    E PS   +K  LSR  +                     ++L   E  D
Sbjct: 142 ENRDVTFIGATTENPSFSVIKPLLSRSVV---------------------VKLESLEPSD 180

Query: 188 LKTIVQRGAK----LTGLAVTDEAAC-EIAMRSRGTPR------------IAGRLLRRVR 230
           L T++ R  +    L G    D+AA  EI   + G  R            + G   RR  
Sbjct: 181 LVTLIARAVEDKRGLNGEVKIDDAAVNEIVRMAGGDARKTLTILEAAAGAVTGDKARR-- 238

Query: 231 DFAEVAHAKTIT----REIADAALLRLAIDKMGFDQLDL 265
              + A   TIT     ++ DAA +R   DK G D  D+
Sbjct: 239 ---KGARRPTITPDVVSQVMDAATVRY--DKDGDDHYDV 272


>gi|308182591|ref|YP_003926718.1| recombination factor protein RarA [Helicobacter pylori PeCan4]
 gi|308064776|gb|ADO06668.1| recombination factor protein RarA [Helicobacter pylori PeCan4]
          Length = 391

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 63/117 (53%), Gaps = 12/117 (10%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           SLL P++LE+F GQ           +A +++     H  F GPPG+GKT+LAQ++A  L 
Sbjct: 5   SLLNPKSLEDFLGQEHLIGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIAHALE 62

Query: 80  ---VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAME 130
              + F +T      K  DL   L N ++   + V+FIDE HRL+   +E L P ME
Sbjct: 63  RPILLFNATD----FKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115


>gi|297379642|gb|ADI34529.1| recombination factor protein RarA [Helicobacter pylori v225d]
          Length = 391

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 63/117 (53%), Gaps = 12/117 (10%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           SLL P++LE+F GQ           +A +++     H  F GPPG+GKT+LAQ++A  L 
Sbjct: 5   SLLNPKSLEDFLGQEHLIGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIAHALE 62

Query: 80  ---VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAME 130
              + F +T      K  DL   L N ++   + V+FIDE HRL+   +E L P ME
Sbjct: 63  RPILLFNATD----FKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115


>gi|109947662|ref|YP_664890.1| recombination factor protein RarA [Helicobacter acinonychis str.
           Sheeba]
 gi|109714883|emb|CAJ99891.1| conserved hypothetical helicase-like protein [Helicobacter
           acinonychis str. Sheeba]
          Length = 393

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/117 (36%), Positives = 62/117 (52%), Gaps = 12/117 (10%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           SLL P+ LE+F GQ           +A +++     H  F GPPG+GKT+LAQ++A  L 
Sbjct: 5   SLLNPKRLEDFLGQEHLIGKDTPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIAHSLE 62

Query: 80  ---VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAME 130
              ++F +T      K  DL   L N +    + ++FIDE HRL+   +E L P ME
Sbjct: 63  RPILSFNATD----FKLDDLRLKLKNYQHALLKPIVFIDETHRLNKTQQEFLLPIME 115


>gi|325107955|ref|YP_004269023.1| recombination protein MgsA [Planctomyces brasiliensis DSM 5305]
 gi|324968223|gb|ADY59001.1| Recombination protein MgsA [Planctomyces brasiliensis DSM 5305]
          Length = 453

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 82/168 (48%), Gaps = 23/168 (13%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTLEEF GQ +  +    L+  +EA +     L  ++F GPPG GKTTLA+++AR+ 
Sbjct: 23  MRPRTLEEFAGQQQFLAEGRLLRRLLEADR-----LGSLIFYGPPGTGKTTLARLIARKT 77

Query: 79  GVNFRSTSGPVIAKAGDLAAL------LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           G  +   +          AAL      L     R +LF+DE+H  +   +++L P +E  
Sbjct: 78  GAGWIGLNAASCGVKEVRAALQKASDSLATTGKRTILFVDELHHFTKTQQDVLLPELEQG 137

Query: 133 QLDLMVG---EGPSARSVKINLSR-----FTLIAATTRVGLLTNPLQD 172
            + + +G   + P    V   LSR     F  ++     GLL N L D
Sbjct: 138 TV-IFIGATTDNPFFALVSALLSRSHIFEFEPLSVEALKGLLKNALAD 184


>gi|33866690|ref|NP_898249.1| recombination factor protein RarA/unknown domain fusion protein
           [Synechococcus sp. WH 8102]
 gi|33633468|emb|CAE08673.1| putative ATPase, AAA family [Synechococcus sp. WH 8102]
          Length = 751

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/145 (35%), Positives = 78/145 (53%), Gaps = 12/145 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRTLEEF GQ    +  ++   A KA  + + +++  GPPG+GKTTLA++VA     +
Sbjct: 41  MRPRTLEEFEGQQGILAQGRLLRRAIKA--DRVGNLILHGPPGVGKTTLARIVANHTRAH 98

Query: 82  FRSTSGPVIAKAGDLAALLT----NLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F S +  V+A   DL A +      LE    R +LFIDE+HR +   ++ L P +E+  +
Sbjct: 99  FSSLNA-VLAGVKDLRAEVDAAKLRLERHGLRSILFIDEVHRFNSAQQDALLPWVENGTV 157

Query: 135 DLM--VGEGPSARSVKINLSRFTLI 157
            L+    E P     K  +SR  L 
Sbjct: 158 TLIGATTENPYFEVNKALVSRSRLF 182


>gi|116071416|ref|ZP_01468685.1| ATPase [Synechococcus sp. BL107]
 gi|116066821|gb|EAU72578.1| ATPase [Synechococcus sp. BL107]
          Length = 726

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 69/123 (56%), Gaps = 10/123 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRTLEEF GQ    +  ++   A KA  + + +++  GPPG+GKTTLA++VA     +
Sbjct: 25  MRPRTLEEFEGQQGILAEGRLLQRAIKA--DRVGNLILHGPPGVGKTTLARIVANHTRAH 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F S    V+A   DL A +   +        R +LFIDE+HR +   ++ L P +E+  +
Sbjct: 83  F-SNLNAVLAGVKDLRAEVDAAQQRLERHGLRTILFIDEVHRFNSAQQDALLPWVENGTV 141

Query: 135 DLM 137
            L+
Sbjct: 142 TLI 144


>gi|317010695|gb|ADU84442.1| recombination factor protein RarA [Helicobacter pylori
           SouthAfrica7]
          Length = 391

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 63/117 (53%), Gaps = 12/117 (10%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +LL P +LE+F GQ           +A +++     H  F GPPG+GKT+LAQ++AR L 
Sbjct: 5   ALLNPTSLEDFLGQEHLIGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIARSLE 62

Query: 80  ---VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAME 130
              + F +T      K  DL   L N ++   + V+FIDE HRL+   +E L P ME
Sbjct: 63  RPILLFNATD----FKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115


>gi|168334208|ref|ZP_02692411.1| AAA ATPase central domain protein [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 420

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 79/264 (29%), Positives = 116/264 (43%), Gaps = 44/264 (16%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP  L +  GQ    +  K+   A  A  + L  ++F GPPG GKTT+A+V+A+    +
Sbjct: 20  LRPVALAQIVGQEHILAKGKLLHRAITA--DKLQSMIFYGPPGSGKTTIAKVIAKTTTSH 77

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F + +     KA D+  L+ N +D         ++FIDEIHR +   ++ L P  ED  +
Sbjct: 78  FETLNATTSGKA-DILRLVQNAKDSLATSSKHTIIFIDEIHRFNKAQQDALLPYAEDGTI 136

Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            L+    E P     +  LSR  +      +  LTN                 E++ TI+
Sbjct: 137 ILIGATTENPYFEVNRALLSRSLIF----ELHSLTN-----------------ENIITIL 175

Query: 193 QRGAKLT--GLAV-----TDEAACEIAMRSRGTPRIAGRLLRRVRDFAE-VAHAK-TITR 243
           QR    T  GL V     TD+AA  IA  + G  R A   L       E  A  K  IT 
Sbjct: 176 QRAITDTDKGLGVYNAILTDQAAEFIATHAAGDARAALNALELATLTTERSADGKINITA 235

Query: 244 EIADAALLR--LAIDKMGFDQLDL 265
           ++A   + +  L  DK G +  D+
Sbjct: 236 QVASECMQKKFLNYDKKGDNHYDV 259


>gi|320534364|ref|ZP_08034850.1| recombination factor protein RarA [Actinomyces sp. oral taxon 171
           str. F0337]
 gi|320133406|gb|EFW25868.1| recombination factor protein RarA [Actinomyces sp. oral taxon 171
           str. F0337]
          Length = 468

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/149 (35%), Positives = 73/149 (48%), Gaps = 28/149 (18%)

Query: 22  LRPRTLEEFTGQVE---ACSNLKVFIEAAKA----------------RAEALDHVLFVGP 62
           +RPRTL+E  GQ       S L+  +E A+A                   +L  V+  GP
Sbjct: 26  MRPRTLDELEGQAHLLTPGSPLRRLVEPAEADKSSHAGEQGSGAVRSAGSSLSSVILWGP 85

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHR 116
           PG GKTTLA +VAR  G  F   S  V A   D+ A++T+   R       VLFIDE+HR
Sbjct: 86  PGTGKTTLAYLVARGSGRRFVELSA-VTAGVKDVRAVVTDARRRLAAGEETVLFIDEVHR 144

Query: 117 LSIIVEEILYPAMEDFQLDLMVG--EGPS 143
            S   ++ L P++E+  + L+    E PS
Sbjct: 145 FSRSQQDALLPSVENRWVTLIAATTENPS 173


>gi|237733075|ref|ZP_04563556.1| ATPase [Mollicutes bacterium D7]
 gi|229383877|gb|EEO33968.1| ATPase [Coprobacillus sp. D7]
          Length = 440

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 113/234 (48%), Gaps = 36/234 (15%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MM ++ +  +N+S E    + LRP TL E+ GQ       K+  +     ++ +  ++F 
Sbjct: 1   MMKQQAMF-KNMSNEPL-ANRLRPTTLTEYVGQRHLIGPGKILYQLI--NSDVVPSMVFW 56

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLT------NLEDRDVLFIDEI 114
           GPPG+GKTTLA+++A +    F + S  V +   D+ A++       +L ++ ++F+DEI
Sbjct: 57  GPPGVGKTTLARIIANQTKAKFINFSA-VTSGIKDIRAVMKQAQEVQDLGEKTIVFVDEI 115

Query: 115 HRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN---LSR---FTLIAATTRVGLLTN 168
           HR +   ++   P +E   + +++G      S +IN   LSR   F L A TT       
Sbjct: 116 HRFNKAQQDAFLPYVEQGSI-ILIGATTENPSFEINSALLSRCKVFVLKALTT------- 167

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
              D FG+   L++        I  +G K   + + D+    IA  S G  R+A
Sbjct: 168 --DDLFGL---LHY------ALISPKGFKDQNVMIDDDLLYMIAGFSNGDARVA 210


>gi|229550919|ref|ZP_04439644.1| recombination ATPase [Lactobacillus rhamnosus LMS2-1]
 gi|258538369|ref|YP_003172868.1| recombination factor protein RarA [Lactobacillus rhamnosus Lc 705]
 gi|229315744|gb|EEN81717.1| recombination ATPase [Lactobacillus rhamnosus LMS2-1]
 gi|257150045|emb|CAR89017.1| AAA ATPase [Lactobacillus rhamnosus Lc 705]
          Length = 448

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 72/264 (27%), Positives = 116/264 (43%), Gaps = 43/264 (16%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           S +RP+TL+EF GQ       KV   +     + +  ++F GPPG+GKTTLA+++AR   
Sbjct: 16  SRMRPQTLDEFVGQTHLLGKNKVL--SNLIEHDEISSMIFWGPPGVGKTTLARIIARRTQ 73

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             F + S  V +   ++  ++   E       + ++F+DEIHR +   ++   P +E   
Sbjct: 74  AQFVTFSA-VTSGIKEIKQVMKEAEQNRELGQKTIVFVDEIHRFNKAQQDAFLPYVERGS 132

Query: 134 LDLMVGEGPSARSVKIN---LSR---FTLIAATTR--VGLLTNPLQDRFGIPIRLNFYEI 185
           + +++G      S ++N   LSR   F L   T+   V LL   L+D             
Sbjct: 133 I-ILIGATTENPSFEVNAALLSRTRVFVLHGLTSAELVDLLQRALKD------------- 178

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
                   RG  L  + ++ +   +IA  + G  RIA   L      AE  H   ++   
Sbjct: 179 -------PRGYGLQQVKISKKLLAQIADFANGDARIALNTLEMAVTNAETKH-DVVSVTQ 230

Query: 246 ADAALL----RLAIDKMGFDQLDL 265
           AD A L     L  DK G +  +L
Sbjct: 231 ADVAQLLTKKALLYDKNGEEHYNL 254


>gi|199599229|ref|ZP_03212631.1| recombination factor protein RarA [Lactobacillus rhamnosus HN001]
 gi|258507184|ref|YP_003169935.1| recombination factor protein RarA [Lactobacillus rhamnosus GG]
 gi|199589910|gb|EDY98014.1| recombination factor protein RarA [Lactobacillus rhamnosus HN001]
 gi|257147111|emb|CAR86084.1| AAA ATPase [Lactobacillus rhamnosus GG]
 gi|259648554|dbj|BAI40716.1| recombination factor protein RarA [Lactobacillus rhamnosus GG]
          Length = 448

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 72/264 (27%), Positives = 116/264 (43%), Gaps = 43/264 (16%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           S +RP+TL+EF GQ       KV     +   + +  ++F GPPG+GKTTLA+++AR   
Sbjct: 16  SRMRPQTLDEFVGQTHLLGKNKVLSNLIEH--DEISSMIFWGPPGVGKTTLARIIARRTQ 73

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             F + S  V +   ++  ++   E       + ++F+DEIHR +   ++   P +E   
Sbjct: 74  AQFVTFSA-VTSGIKEIKQVMKEAEQNRELGQKTIVFVDEIHRFNKAQQDAFLPYVERGS 132

Query: 134 LDLMVGEGPSARSVKIN---LSR---FTLIAATTR--VGLLTNPLQDRFGIPIRLNFYEI 185
           + +++G      S ++N   LSR   F L   T+   V LL   L+D             
Sbjct: 133 I-ILIGATTENPSFEVNAALLSRTRVFVLHGLTSAELVDLLQRALKD------------- 178

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
                   RG  L  + ++ +   +IA  + G  RIA   L      AE  H   ++   
Sbjct: 179 -------PRGYGLQQVKISKKLLAQIADFANGDARIALNTLEMAVTNAETKH-DVVSVTQ 230

Query: 246 ADAALL----RLAIDKMGFDQLDL 265
           AD A L     L  DK G +  +L
Sbjct: 231 ADVAQLLTKKALLYDKNGEEHYNL 254


>gi|315604260|ref|ZP_07879326.1| AAA family ATPase [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315313966|gb|EFU62017.1| AAA family ATPase [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 447

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 81/158 (51%), Gaps = 16/158 (10%)

Query: 1   MMDREGLLSRNVSQEDADISL---LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEAL 54
           + D E    R V   DAD  L   +RP +L+E  GQ   +   + L+  +  +     A+
Sbjct: 3   LFDSESFDDRGVPACDADAPLAVRMRPTSLDEVVGQGHLLGEGAPLRRLLTPSSRDGVAV 62

Query: 55  DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAAL-------LTNLEDRD 107
             V+  GPPG GKTTLA ++AR  G +F   S  V +  GD+ ++       + + ++  
Sbjct: 63  SSVVLWGPPGTGKTTLAYLIARASGRHFVELSA-VSSGVGDVRSVVQAARRRIASGDEET 121

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG--EGPS 143
           VLF+DE+HR S   ++ L PA+E+  + L+    E PS
Sbjct: 122 VLFVDEVHRFSKAQQDSLLPAVENRWVVLVAATTENPS 159


>gi|15645640|ref|NP_207816.1| recombination factor protein RarA [Helicobacter pylori 26695]
 gi|2314168|gb|AAD08068.1| conserved hypothetical helicase-like protein [Helicobacter pylori
           26695]
          Length = 391

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 63/117 (53%), Gaps = 12/117 (10%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           SLL P++LE+F GQ           +A +++     H  F GPPG+GKT+LAQ++A  L 
Sbjct: 5   SLLNPKSLEDFLGQEHLVGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIAYMLE 62

Query: 80  ---VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAME 130
              + F +T      K  DL   L N ++   + V+FIDE HRL+   +E L P ME
Sbjct: 63  RPILLFNATD----FKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115


>gi|331702365|ref|YP_004399324.1| AAA ATPase central domain-containing protein [Lactobacillus
           buchneri NRRL B-30929]
 gi|329129708|gb|AEB74261.1| AAA ATPase central domain protein [Lactobacillus buchneri NRRL
           B-30929]
          Length = 441

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 79/150 (52%), Gaps = 11/150 (7%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M +E L + N        S +RP+TL++F GQ +     KV  E  ++  + L  ++F G
Sbjct: 1   MKQESLFAGNQDGNQPLASRVRPKTLDQFVGQHQLVGKGKVLREIIES--DQLPSIIFWG 58

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIH 115
           PPG+GKTTLA+++A++    F + S  V +   ++  ++ + E       + ++F+DEIH
Sbjct: 59  PPGVGKTTLAEIIAKKTQAKFVTFSA-VTSGIKEIREIMKDAEANREMGGKTIVFVDEIH 117

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPS 143
           R +   ++   P +E   + L+    E PS
Sbjct: 118 RFNKAQQDAFLPFVERGSITLIGATTENPS 147


>gi|299137091|ref|ZP_07030274.1| AAA ATPase central domain protein [Acidobacterium sp. MP5ACTX8]
 gi|298601606|gb|EFI57761.1| AAA ATPase central domain protein [Acidobacterium sp. MP5ACTX8]
          Length = 447

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 116/263 (44%), Gaps = 45/263 (17%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPR+L+EF GQ         L++ IE   + +     +LF GPPG+GKTTLA+++ARE 
Sbjct: 26  MRPRSLDEFFGQQHLLGPGMPLRLQIERDDSAS-----LLFWGPPGVGKTTLAKIIARET 80

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
             +F   S  V++   ++  ++   E       R +LF+DEIHR +   ++   P +E  
Sbjct: 81  QASFIEFSA-VLSGIKEIKQVMVEAEKAAEFGSRTILFVDEIHRFNKAQQDAFLPYVERG 139

Query: 133 QLDLMVGEGPSARSVKIN---LSR---FTL--IAATTRVGLLTNPLQDRFGIPIRLNFYE 184
            + L +G      S +IN   LSR   +TL  +     V LL   LQD            
Sbjct: 140 TIRL-IGATTENPSFEINAALLSRCRVYTLRALGQDEVVALLQRALQD------------ 186

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
                   +RG     L V + A   IA  S G  R A   L       E    K +T+ 
Sbjct: 187 -------AERGLGALQLEVEEGALEAIASYSSGDARNALNALEVGAKLTEGRGEKLLTKA 239

Query: 245 IADAALLR--LAIDKMGFDQLDL 265
           +A  AL +  L  DK G    D+
Sbjct: 240 LAAEALQQRVLLYDKKGEQHYDI 262


>gi|311113678|ref|YP_003984900.1| AAA family ATPase [Rothia dentocariosa ATCC 17931]
 gi|310945172|gb|ADP41466.1| AAA family ATPase [Rothia dentocariosa ATCC 17931]
          Length = 481

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/147 (36%), Positives = 74/147 (50%), Gaps = 14/147 (9%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           SR  SQ    + + RPR ++E  GQ       S L+V   A K+       V+  GPPG 
Sbjct: 25  SRTASQAPLAVRM-RPRHVDEVFGQAHLLTPGSPLRVLAGADKSGPAGPSSVILYGPPGT 83

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTN-LEDRD------VLFIDEIHRLS 118
           GKTTLA V+AR  G  F   S  + A   D+ A++   L DRD      VLF+DEIHR +
Sbjct: 84  GKTTLAHVIARAPGRKFVELSA-ITAGVKDVRAVMDQALLDRDMYGTTTVLFLDEIHRFT 142

Query: 119 IIVEEILYPAMEDFQLDLMVG--EGPS 143
              ++ L P +E+  + L+    E PS
Sbjct: 143 KAQQDALLPGVENRWVILVAATTENPS 169


>gi|184200999|ref|YP_001855206.1| hypothetical protein KRH_13530 [Kocuria rhizophila DC2201]
 gi|183581229|dbj|BAG29700.1| hypothetical protein [Kocuria rhizophila DC2201]
          Length = 556

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/148 (35%), Positives = 76/148 (51%), Gaps = 14/148 (9%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL+E  GQ   +   S L+  +  +   A A   V+  GPPG GKTT+AQV+AR  
Sbjct: 41  MRPRTLDEVVGQKHLLRPGSPLRALVNGSSGPA-APSSVILWGPPGTGKTTIAQVIARGH 99

Query: 79  GVNFRSTSGPVIAKAGDLAALLTN-LEDRD------VLFIDEIHRLSIIVEEILYPAMED 131
           G  F   S  + A   D+  ++   L  RD      VLF+DEIHR +   ++ L P +E+
Sbjct: 100 GTTFVELSA-LTAGVKDVRRVMDEALTARDLHGRTTVLFLDEIHRFTKAQQDALLPGVEN 158

Query: 132 FQLDLMVG--EGPSARSVKINLSRFTLI 157
             + L+    E PS   +   LSR  ++
Sbjct: 159 GWVILVAATTENPSFSVISPLLSRSLML 186


>gi|300741584|ref|ZP_07071605.1| ATPase, AAA family [Rothia dentocariosa M567]
 gi|300380769|gb|EFJ77331.1| ATPase, AAA family [Rothia dentocariosa M567]
          Length = 481

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/147 (36%), Positives = 74/147 (50%), Gaps = 14/147 (9%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           SR  SQ    + + RPR ++E  GQ       S L+V   A K+       V+  GPPG 
Sbjct: 25  SRTASQAPLAVRM-RPRHVDEVFGQAHLLTPGSPLRVLAGADKSGPAGPSSVILYGPPGT 83

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTN-LEDRD------VLFIDEIHRLS 118
           GKTTLA V+AR  G  F   S  + A   D+ A++   L DRD      VLF+DEIHR +
Sbjct: 84  GKTTLAHVIARAPGRKFVELSA-ITAGVKDVRAVMDQALLDRDMYGTTTVLFLDEIHRFT 142

Query: 119 IIVEEILYPAMEDFQLDLMVG--EGPS 143
              ++ L P +E+  + L+    E PS
Sbjct: 143 KAQQDALLPGVENRWVILVAATTENPS 169


>gi|238924907|ref|YP_002938423.1| recombination factor protein RarA [Eubacterium rectale ATCC 33656]
 gi|238876582|gb|ACR76289.1| recombination factor protein RarA [Eubacterium rectale ATCC 33656]
          Length = 442

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 61/119 (51%), Gaps = 10/119 (8%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           S +RP TL+E  GQ       K+   A KA  + L  ++F GPPG GKTTLA+V+A    
Sbjct: 20  SRMRPTTLDEVVGQQHIVGKDKLLYRAIKA--DKLSSIIFYGPPGTGKTTLAKVIAHTTS 77

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131
             F   +     K  D+  ++   ++       + +LFIDEIHR +   ++ L P +ED
Sbjct: 78  AEFMQINATSAGKK-DMEEVVEQAKNNQGMYQKKTILFIDEIHRFNKGQQDYLLPFVED 135


>gi|291525969|emb|CBK91556.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [Eubacterium rectale DSM 17629]
 gi|291527297|emb|CBK92883.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [Eubacterium rectale M104/1]
          Length = 442

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 61/119 (51%), Gaps = 10/119 (8%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           S +RP TL+E  GQ       K+   A KA  + L  ++F GPPG GKTTLA+V+A    
Sbjct: 20  SRMRPTTLDEVVGQQHIVGKDKLLYRAIKA--DKLSSIIFYGPPGTGKTTLAKVIAHTTS 77

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131
             F   +     K  D+  ++   ++       + +LFIDEIHR +   ++ L P +ED
Sbjct: 78  AEFMQINATSAGKK-DMEEVVEQAKNNQGMYQKKTILFIDEIHRFNKGQQDYLLPFVED 135


>gi|149240319|ref|XP_001526035.1| hypothetical protein LELG_02593 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146450158|gb|EDK44414.1| hypothetical protein LELG_02593 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 516

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/166 (34%), Positives = 88/166 (53%), Gaps = 19/166 (11%)

Query: 1   MMDREGLLSRNVSQEDADISL---LRPRTLEEFTGQVEACSNLK-VFIEAAKARAEALDH 56
           M   E  +S  V+    ++SL   +RP TL  + GQ    +  K +F  A   R   L  
Sbjct: 1   MTIEEETVSTQVADNGLELSLSEAVRPNTLANYVGQRHLLNEEKGIF--ANYIRMGYLPS 58

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAA-----LLTNLEDRDVLFI 111
           +L +GPPG GKTTLA++VA+  G    +TS  +   A  L       L+ + +++ V+FI
Sbjct: 59  MLLIGPPGSGKTTLARLVAKSCGY---ATSNIIELSATTLTTENIKNLVNDCQEQLVVFI 115

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVG----EGPSARSVKINLSR 153
           DEIHRLS + ++ L P +ED ++ +++G    E P  R  K  LSR
Sbjct: 116 DEIHRLSKVQQDWLLPFVEDGKI-VLIGATTLETPLRRIRKAILSR 160


>gi|268315897|ref|YP_003289616.1| AAA ATPase central domain-containing protein [Rhodothermus marinus
           DSM 4252]
 gi|262333431|gb|ACY47228.1| AAA ATPase central domain protein [Rhodothermus marinus DSM 4252]
          Length = 458

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 77/142 (54%), Gaps = 14/142 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRTL+EF GQ       K+   A +A  + L  ++F GPPG GKTTLA+++AR    +
Sbjct: 23  MRPRTLDEFVGQEHILGPGKLLRRAIEA--DRLSSLIFYGPPGTGKTTLARIIARTSRAH 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F + +  V+A   D+   +   ++       R +LFIDE+HR +   ++ L P +E+  +
Sbjct: 81  FTALNA-VLAGVKDIRDAIEAAQERLRLHQQRTILFIDEVHRFNKAQQDALLPHVENGTV 139

Query: 135 DLMVG---EGPSARSVKINLSR 153
            + +G   E P    +K  +SR
Sbjct: 140 -IFIGATTENPYFEVIKPLVSR 160


>gi|88807186|ref|ZP_01122698.1| putative ATPase, AAA family protein [Synechococcus sp. WH 7805]
 gi|88788400|gb|EAR19555.1| putative ATPase, AAA family protein [Synechococcus sp. WH 7805]
          Length = 759

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 84/167 (50%), Gaps = 16/167 (9%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           RE LL R     D     LRPR L+EF GQ    +  ++   A  A  + + +++  GPP
Sbjct: 36  REALLRRQAPLADR----LRPRNLDEFVGQGAILAEGRLLRRAIAA--DRVGNLILHGPP 89

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTN----LED---RDVLFIDEIHR 116
           G+GKTTLA+++A     +F S +  V+A   DL A ++     LE    R +LFIDE+HR
Sbjct: 90  GVGKTTLARIIANHTRAHFSSLNA-VLAGVKDLRAEVSEAGQRLERHGLRTILFIDEVHR 148

Query: 117 LSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATT 161
            +   ++ L P +E+  L L+    E P     K  +SR  L    T
Sbjct: 149 FNSAQQDALLPWVENGTLTLIGATTENPYFEVNKALVSRSRLFRLQT 195


>gi|256825082|ref|YP_003149042.1| Recombination protein MgsA [Kytococcus sedentarius DSM 20547]
 gi|256688475|gb|ACV06277.1| Recombination protein MgsA [Kytococcus sedentarius DSM 20547]
          Length = 499

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/148 (37%), Positives = 76/148 (51%), Gaps = 14/148 (9%)

Query: 22  LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPR+LEE  GQ E     S L+  IE  +  A A   +L+ GPPG GKTTLA++VA   
Sbjct: 35  MRPRSLEEVVGQREVLAPGSPLRRLIEGRRGVAGASSAILW-GPPGTGKTTLARLVADGA 93

Query: 79  GVNFRSTSGPVIAKAGDLAALL-------TNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
              F   S  V A   D+ A++       +    + VLF+DEIHR +   ++ L P +ED
Sbjct: 94  DRTFVQLSA-VTAGVKDVRAVMEAARRDKSMYGRQTVLFLDEIHRFTKAQQDALLPGVED 152

Query: 132 FQLDLMVG--EGPSARSVKINLSRFTLI 157
             + L+    E PS   V   LSR  L+
Sbjct: 153 RTVILVAATTENPSFTVVTPLLSRSVLV 180


>gi|257068799|ref|YP_003155054.1| Recombination protein MgsA [Brachybacterium faecium DSM 4810]
 gi|256559617|gb|ACU85464.1| Recombination protein MgsA [Brachybacterium faecium DSM 4810]
          Length = 461

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 61/185 (32%), Positives = 86/185 (46%), Gaps = 35/185 (18%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL+E  GQ   +E  S L+  + +   R  A   V+  GPPG GKTTLA VVA+  
Sbjct: 33  MRPRTLDEVVGQHAALEPGSPLRRLVSSDDTRT-APASVILWGPPGTGKTTLAYVVAQSG 91

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131
              F   S  V+A   D+  ++     R        VLF+DE+HR S   ++ L P++E+
Sbjct: 92  DREFVEISA-VLAGVKDIREVVDQARSRLRTVGRETVLFVDEVHRFSKSQQDALLPSVEN 150

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT--NPLQDRFGIPIRLNFYEIEDLK 189
             +                    TL+AATT     +  +PL  R  I + L   E EDL 
Sbjct: 151 RWV--------------------TLVAATTENPYFSVISPLLSR-SIVLTLESLEQEDLD 189

Query: 190 TIVQR 194
            +V R
Sbjct: 190 ALVDR 194


>gi|259502469|ref|ZP_05745371.1| replication-associated recombination protein A [Lactobacillus antri
           DSM 16041]
 gi|259169612|gb|EEW54107.1| replication-associated recombination protein A [Lactobacillus antri
           DSM 16041]
          Length = 442

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 87/172 (50%), Gaps = 16/172 (9%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M +E L ++  S      + +RP +L EF GQ       +V  E  +   + L  ++F G
Sbjct: 1   MHQESLFAQTNSAATPLANRVRPASLGEFVGQQHLIGPHRVLRELIEN--DQLSSLIFWG 58

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIH 115
           PPG+GKTTLA+++A++   +F + S  V +   D+  ++   E      +R + FIDEIH
Sbjct: 59  PPGVGKTTLAEIIAQQTKAHFVTFSA-VTSSIKDIRKIMQEAEQNREYGERTICFIDEIH 117

Query: 116 RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN---LSR---FTLIAATT 161
           R +   ++   P +E   + +++G      S +IN   LSR   F L A TT
Sbjct: 118 RFNKAQQDAFLPFVERGSI-ILIGATTENPSFEINSALLSRCKVFVLKALTT 168


>gi|256829632|ref|YP_003158360.1| AAA ATPase central domain-containing protein [Desulfomicrobium
           baculatum DSM 4028]
 gi|256578808|gb|ACU89944.1| AAA ATPase central domain protein [Desulfomicrobium baculatum DSM
           4028]
          Length = 430

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 76/148 (51%), Gaps = 11/148 (7%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           V+Q+      LRP +L++F GQ      L+  +++     + L  +L  GPPG GK+T+A
Sbjct: 15  VAQKRPLAESLRPESLDDFIGQSHFRQRLRTLMQS-----KDLPSLLLFGPPGCGKSTVA 69

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            ++A+     F   S P +     + AL   ++D+++L +DE+HR S   ++   P +E 
Sbjct: 70  LLLAKHADKPFVRVSAPEVG----ITALRKQIQDKEILILDELHRYSKAQQDFFLPLLET 125

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLI 157
            +L L+    E PS    +  LSR  ++
Sbjct: 126 GELTLIATTTENPSFSVTRQLLSRLHVL 153


>gi|222056545|ref|YP_002538907.1| ATPase AAA [Geobacter sp. FRC-32]
 gi|221565834|gb|ACM21806.1| AAA ATPase central domain protein [Geobacter sp. FRC-32]
          Length = 438

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 120/265 (45%), Gaps = 51/265 (19%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRT+ E+ GQ +       L+  IE+     + L  ++F GPPG GKTTLA+V+A   
Sbjct: 22  MRPRTIAEYVGQEQLLGEGKLLRRLIES-----DQLTSLIFWGPPGSGKTTLARVIAGAT 76

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131
             +F   S  +++   ++  ++   E+       R +LF+DEIHR +   ++   P +E 
Sbjct: 77  SSHFIFFSA-ILSGIKEIREIVKEAEEVRKFQGRRTILFVDEIHRFNKSQQDAFLPYVEK 135

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT--NPLQDRFGIPIRLNFYEIEDLK 189
                                 FT+I ATT         PL  R  + + LN    E+L+
Sbjct: 136 --------------------GVFTIIGATTENPSFEVIAPLLSRCKVLV-LNTLSEEELQ 174

Query: 190 TIV-------QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            I+       +RG     LA+TD+A   +A ++ G  R+A   L  +   A +A   TIT
Sbjct: 175 KIIRNALTDRERGLGNLDLAITDDALSYMAEQAGGDGRVA---LNTLETAARLAENGTIT 231

Query: 243 REIADAALLR--LAIDKMGFDQLDL 265
            E    A+ +  L  DK G +  ++
Sbjct: 232 IENVREAVQKKPLLYDKGGEEHYNV 256


>gi|300813628|ref|ZP_07093956.1| recombination factor protein RarA [Peptoniphilus sp. oral taxon 836
           str. F0141]
 gi|300512264|gb|EFK39436.1| recombination factor protein RarA [Peptoniphilus sp. oral taxon 836
           str. F0141]
          Length = 436

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 84/176 (47%), Gaps = 14/176 (7%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           + +N++ +      LRP+ LEEF GQ       K      K+  + ++ +LF GPPG+GK
Sbjct: 8   MEKNLNNKSPLADRLRPKNLEEFVGQDHIIGQGKFLSRLIKS--DRVNSLLFYGPPGVGK 65

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSII 120
           TTLA+++A     NF   S  V +   +L  +L   +D         ++FIDEIHR +  
Sbjct: 66  TTLAKIIANLTNKNFVELSA-VTSNIKELREVLQKAQDDFKFSNIETIVFIDEIHRFNKT 124

Query: 121 VEEILYPAMEDFQLDLMVG---EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
            ++ L P +E   + +++G   E P     K  LSR  ++          N L DR
Sbjct: 125 QQDALLPYVER-GIIILIGATTENPYFEVNKALLSRLQILNLKALENKDMNKLIDR 179


>gi|206895474|ref|YP_002247556.1| AAA ATPase, central region [Coprothermobacter proteolyticus DSM
           5265]
 gi|206738091|gb|ACI17169.1| AAA ATPase, central region [Coprothermobacter proteolyticus DSM
           5265]
          Length = 459

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 99/218 (45%), Gaps = 43/218 (19%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL+E  GQ +A      L+  IE  K     L  ++  GPPG+GKT++A V+A   
Sbjct: 24  MRPRTLDEIVGQDKAFGKGTLLRKLIEEDK-----LTSLVLWGPPGVGKTSIAMVIANTT 78

Query: 79  GVNF----RSTSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
              F      TSG   I +  + A +  N+  R V+F+DEIH  +   ++   P +E   
Sbjct: 79  KARFLRFSAVTSGIKEIKEVLEDAEVQFNMGRRTVIFVDEIHHFNKTQQDAFLPYVEKGA 138

Query: 134 LDLMVG--EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + L+    E PS   +   LSR  ++        +  PL             E ED+KTI
Sbjct: 139 VVLICATTENPSFEIISPLLSRSKVV--------VLEPL-------------EAEDIKTI 177

Query: 192 V-------QRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
           +       +RG     + +TDE    IA+ S G  RIA
Sbjct: 178 LYRALADKERGLGNERVVITDEQLMRIAVYSDGDARIA 215


>gi|54025615|ref|YP_119857.1| recombination factor protein RarA [Nocardia farcinica IFM 10152]
 gi|54017123|dbj|BAD58493.1| putative AAA ATPase [Nocardia farcinica IFM 10152]
          Length = 451

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/146 (38%), Positives = 76/146 (52%), Gaps = 23/146 (15%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPR+LEE  GQ   +   S L+  IE + A +     VL  GPPG GKTTLA ++++  
Sbjct: 38  MRPRSLEEVVGQQHLLGPGSPLRRLIEGSGAAS-----VLLFGPPGTGKTTLASLISQAT 92

Query: 79  GVNFRSTSGPVIAKAG--------DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           G  F + S      AG        DLA       +R VLFIDE+HR S   ++ L  A+E
Sbjct: 93  GRRFEALSA---LSAGVKEVRAVIDLARRRLTAGERTVLFIDEVHRFSKTQQDALLAAVE 149

Query: 131 DFQLDLMVG---EGPSARSVKINLSR 153
           + ++ L+VG   E PS   V   LSR
Sbjct: 150 N-RIVLLVGATTENPSFSVVSPLLSR 174


>gi|57168339|ref|ZP_00367473.1| ATPase, AAA family [Campylobacter coli RM2228]
 gi|57020147|gb|EAL56821.1| ATPase, AAA family [Campylobacter coli RM2228]
          Length = 363

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 102/226 (45%), Gaps = 43/226 (19%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED---RDV 108
           + L H LF GP G GKTT A+VVA++ G++F    G    K  DL  ++ N ++   + +
Sbjct: 2   QKLPHSLFFGPAGCGKTTFARVVAKDFGLDFYEFDGGNF-KLEDLRKIIENYKNSLYKPL 60

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +FIDEIHRLS   +E+L   ME++                    R  +I A+T      N
Sbjct: 61  IFIDEIHRLSKTQQEMLLIPMENY--------------------RCIVIGASTE-----N 95

Query: 169 P-LQDRFGIPIRLNFYEI-----EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
           P      GI  R   +E      +DL+ +++R  +     + D A  E  ++S       
Sbjct: 96  PYFVLSSGIRSRSMLFEFKNLGQKDLELLLERVQQKIAFKIEDNAK-EFLLKS-----FD 149

Query: 223 GRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYL 268
            R +  + +FA V + K IT E  +   LR  ++  G    D  Y+
Sbjct: 150 ARAMLNLLEFALVLNEKEITLE--NLKKLRNGVNSEGVSSKDTHYI 193


>gi|329946639|ref|ZP_08294051.1| ATPase, AAA family [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328526450|gb|EGF53463.1| ATPase, AAA family [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 468

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/149 (36%), Positives = 71/149 (47%), Gaps = 28/149 (18%)

Query: 22  LRPRTLEEFTGQ-------------VEACSNLKVFIEAAKARAEA------LDHVLFVGP 62
           +RPRTL+E  GQ             VE     +     A AR  A      L  V+  GP
Sbjct: 26  MRPRTLDELEGQTHLLTPGSPLRRLVEPSRTTEQVDSGAPARPNAHRLGASLSSVVLWGP 85

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHR 116
           PG GKTTLA +VAR  G  F   S  V A   D+ A++T+   R       VLFIDE+HR
Sbjct: 86  PGTGKTTLAYLVARGSGRRFVELSA-VTAGVKDVRAVVTDARRRLSAGEETVLFIDEVHR 144

Query: 117 LSIIVEEILYPAMEDFQLDLMVG--EGPS 143
            S   ++ L P++E+  + L+    E PS
Sbjct: 145 FSRSQQDALLPSVENRWVTLIAATTENPS 173


>gi|111224626|ref|YP_715420.1| recombination factor protein RarA [Frankia alni ACN14a]
 gi|111152158|emb|CAJ63888.1| putative polynucleotide enzyme with nucleotide triphosphate
           hydrolase domain [Frankia alni ACN14a]
          Length = 534

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/119 (37%), Positives = 63/119 (52%), Gaps = 16/119 (13%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL+E  GQ   + A S L+  +E     +     V+  GPPG GKTTLA +V+R  
Sbjct: 64  LRPQTLDEVVGQRHLLGAGSPLRRLVEGGGTTS-----VILWGPPGTGKTTLAHIVSRAT 118

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAME 130
           G  FR  S  V A   D+ A++            R VLFIDE+HR +   ++ L P++E
Sbjct: 119 GRRFRELSA-VTAGVKDVRAVIDEARAASSASGTRTVLFIDEVHRFTRTQQDALLPSVE 176


>gi|207092026|ref|ZP_03239813.1| recombination factor protein RarA [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 367

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 63/117 (53%), Gaps = 12/117 (10%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           SLL P++LE+F GQ           +A +++     H  F GPPG+GKT+LAQ++A  L 
Sbjct: 5   SLLNPKSLEDFLGQEHLVGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIACMLE 62

Query: 80  ---VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAME 130
              + F +T      K  DL   L N ++   + V+FIDE HRL+   +E L P ME
Sbjct: 63  RPILLFNATD----FKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115


>gi|308233738|ref|ZP_07664475.1| Recombination protein MgsA [Atopobium vaginae DSM 15829]
 gi|328943727|ref|ZP_08241192.1| AAA family ATPase [Atopobium vaginae DSM 15829]
 gi|327491696|gb|EGF23470.1| AAA family ATPase [Atopobium vaginae DSM 15829]
          Length = 475

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 67/119 (56%), Gaps = 14/119 (11%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRTL+EF GQ +AC     ++  A  R + L  ++  GPPG GKTTLAQ++A     +
Sbjct: 48  MRPRTLDEFVGQ-KACIGKDSWLRLAIER-DILSSIILYGPPGTGKTTLAQIIAHTSSAH 105

Query: 82  FRSTSGPVIAKAGDLAA---------LLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
           F   S  ++A+  D+           L+TN+  + ++FIDEIHR S   ++ L   +E+
Sbjct: 106 FVDLSA-LLARVKDVREELAQARSRLLITNV--KTIMFIDEIHRFSRSQQDSLLKGVEN 161


>gi|225419780|ref|ZP_03762083.1| hypothetical protein CLOSTASPAR_06118 [Clostridium asparagiforme
           DSM 15981]
 gi|225041584|gb|EEG51830.1| hypothetical protein CLOSTASPAR_06118 [Clostridium asparagiforme
           DSM 15981]
          Length = 449

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 69/259 (26%), Positives = 113/259 (43%), Gaps = 33/259 (12%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           S LRP TL+EF GQ +     K+  +      + +  ++F GPPG+GKTTLA ++A+   
Sbjct: 27  SRLRPETLDEFVGQNQLLGEGKILRQIIDQ--DNIPSMIFWGPPGVGKTTLASIIAKRTH 84

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             F + S  V +   ++  ++   E       R V+F+DEIHR +   ++   P +E   
Sbjct: 85  AEFINFSA-VTSGIKEIKEVMARAEQGRRMGKRTVVFVDEIHRFNKAQQDAFLPYVEKGS 143

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGL----LTNPLQDRFGIPIRLNFYEIEDLK 189
           + +++G      S +IN +  +        GL    LT  L++    P            
Sbjct: 144 I-ILIGATTENPSFEINAALLSRCRVFVLQGLGEEDLTRLLKNALQSP------------ 190

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK-TITREIADA 248
               RG     + ++D     IA  S G  R A  +L       E++  K T+T EI + 
Sbjct: 191 ----RGFGYLNVDISDAMLGAIARFSGGDARTALNILEMAVSNGEISAEKTTVTPEILEQ 246

Query: 249 ALLR--LAIDKMGFDQLDL 265
            + R  L  DK G +  +L
Sbjct: 247 CMSRKSLLYDKNGEEHYNL 265


>gi|313143847|ref|ZP_07806040.1| recombination factor protein RarA [Helicobacter cinaedi CCUG 18818]
 gi|313128878|gb|EFR46495.1| recombination factor protein RarA [Helicobacter cinaedi CCUG 18818]
          Length = 384

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 51/86 (59%), Gaps = 4/86 (4%)

Query: 50  RAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED---R 106
           +  AL H  F GPPG GKTTLA ++A+EL   F S +     K  +L   + + E+   +
Sbjct: 3   KHNALSHCFFYGPPGSGKTTLAALIAKELNKPFMSYNATSF-KIEELRQFVKSYENTLFQ 61

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDF 132
            ++FIDE+HRL+   +E+L P ME +
Sbjct: 62  PIIFIDEVHRLTRTQQEVLLPIMESY 87


>gi|239917777|ref|YP_002957335.1| Recombination protein MgsA [Micrococcus luteus NCTC 2665]
 gi|281413730|ref|ZP_06245472.1| recombination factor protein RarA [Micrococcus luteus NCTC 2665]
 gi|239838984|gb|ACS30781.1| Recombination protein MgsA [Micrococcus luteus NCTC 2665]
          Length = 465

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/134 (35%), Positives = 69/134 (51%), Gaps = 13/134 (9%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL++  GQ   +   S L+   E     A     V+  GPPG+GKTTLA V+AR  
Sbjct: 34  MRPRTLDDVLGQRHLMRPGSPLRKLAEPDPDSAAGPSSVILYGPPGIGKTTLAHVIARAP 93

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE-DRD------VLFIDEIHRLSIIVEEILYPAMED 131
           G  F   S  + A   D+  ++   + +RD      VLF+DEIHR S   ++ L P +E+
Sbjct: 94  GRTFTELSA-ITAGVKDVRQVMEQAQRERDLYGRTTVLFLDEIHRFSKAQQDALLPGVEN 152

Query: 132 FQLDLMVG--EGPS 143
             + L+    E PS
Sbjct: 153 RWVVLVAATTENPS 166


>gi|332673268|gb|AEE70085.1| ATPase [Helicobacter pylori 83]
          Length = 391

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 63/117 (53%), Gaps = 12/117 (10%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           SLL P++LE+F GQ           +A +++     H  F GPPG+GKT+LAQ++A  L 
Sbjct: 5   SLLNPKSLEDFLGQEHLIGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIACMLE 62

Query: 80  ---VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAME 130
              + F +T      K  DL   L N ++   + V+FIDE HRL+   +E L P ME
Sbjct: 63  RPILLFNATD----FKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115


>gi|94265038|ref|ZP_01288806.1| AAA ATPase, central region [delta proteobacterium MLMS-1]
 gi|93454471|gb|EAT04759.1| AAA ATPase, central region [delta proteobacterium MLMS-1]
          Length = 441

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 77/263 (29%), Positives = 122/263 (46%), Gaps = 49/263 (18%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP +L +F GQ     + K+   +   R+  L  +L  GPPG GKTTLA+++AR+ G +
Sbjct: 14  MRPASLAQFVGQRHLLGDDKLL--SGLLRSGHLPSLLLWGPPGSGKTTLARLLARQSGAD 71

Query: 82  FRSTSGPVIAKAGDLAALLT----NLEDR---DVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F   S  V++   ++ A++     NLE      VLF+DEIHR +   ++   P +E   L
Sbjct: 72  FIFFSA-VLSGVKEIRAIVERSRLNLEKSGRGSVLFVDEIHRFNKGQQDAFLPHVESGLL 130

Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            L+    E PS          F +IA          PL  R  + + LN  E ++L  I+
Sbjct: 131 TLIGATTENPS----------FQVIA----------PLLSRCRVLV-LNALEEDELGEIL 169

Query: 193 -------QRGAKLTGLAVTDEAACEIAMRSRGTPR-IAGRLLRRVRDFAEVAHAKTITRE 244
                  Q+G   + L+++DEAA  +   + G  R + G L        E+A A    ++
Sbjct: 170 AAALSDRQQGLGESELSISDEAAAHLIAVADGDARNLLGSL--------EIAAALVADKK 221

Query: 245 IADAALLRLAIDKMGFDQLDLRY 267
            AD   + LA  +    +  LRY
Sbjct: 222 AADTGRIELADIEEAIQRKSLRY 244


>gi|328948385|ref|YP_004365722.1| ATPase AAA central domain protein [Treponema succinifaciens DSM
           2489]
 gi|328448709|gb|AEB14425.1| AAA ATPase central domain protein [Treponema succinifaciens DSM
           2489]
          Length = 805

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/116 (37%), Positives = 63/116 (54%), Gaps = 8/116 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRTL+E+ GQ       ++   A  A  + L  V+F GPPG GKTTLA+V+A     N
Sbjct: 19  MRPRTLDEYIGQEHIVGKGRLLRRAIAA--DQLTSVIFYGPPGTGKTTLARVIANHTSSN 76

Query: 82  FRSTSGPV-----IAKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMED 131
           F + +  +     I KA   A    NL  R  +LF+DE+HR +   ++ L P +E+
Sbjct: 77  FITLNAVLTGVADIRKAISDAETQKNLYKRKTILFVDEVHRWNKSQQDALLPWVEN 132


>gi|300854386|ref|YP_003779370.1| putative helicase subunit of Holliday junction resolvase
           [Clostridium ljungdahlii DSM 13528]
 gi|300434501|gb|ADK14268.1| predicted helicase subunit of Holliday junction resolvase
           [Clostridium ljungdahlii DSM 13528]
          Length = 438

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 61/116 (52%), Gaps = 10/116 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP TLEEF GQ    S  K+   A     + +   +F GPPG+GKTTLA+++A     N
Sbjct: 22  MRPETLEEFIGQEHILSKGKMLYRAI--VTDNISSAIFYGPPGVGKTTLARIIANTTKAN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAME 130
           F   S  V +   D+  ++   +D       + +LFIDEIHR +   ++ +  A+E
Sbjct: 80  FYELSA-VNSGTSDVKKIIKEADDNQKFYSKKTILFIDEIHRFNKAQQDSVLNAVE 134


>gi|260435731|ref|ZP_05789701.1| recombination factor protein RarA/unknown domain fusion protein
           [Synechococcus sp. WH 8109]
 gi|260413605|gb|EEX06901.1| recombination factor protein RarA/unknown domain fusion protein
           [Synechococcus sp. WH 8109]
          Length = 722

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 68/117 (58%), Gaps = 10/117 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRTLEEF GQ    ++ ++   A KA  + + +++  GPPG+GKTTLA+++A     +
Sbjct: 25  MRPRTLEEFEGQSGILADGRLLRRAIKA--DRVGNLILHGPPGVGKTTLARIIANHTRAH 82

Query: 82  FRSTSGPVIAKAGDLA----ALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMED 131
           F S +  V+A   DL     A    LE    R +LFIDE+HR +   ++ L P +E+
Sbjct: 83  FSSLNA-VLAGIKDLRIEVDAARQRLERHGLRTILFIDEVHRFNSAQQDALLPWVEN 138


>gi|217033284|ref|ZP_03438715.1| hypothetical protein HP9810_9g37 [Helicobacter pylori 98-10]
 gi|216944225|gb|EEC23650.1| hypothetical protein HP9810_9g37 [Helicobacter pylori 98-10]
          Length = 391

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 63/117 (53%), Gaps = 12/117 (10%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           SLL P++LE+F GQ           +A +++     H  F GPPG+GKT+LAQ++A  L 
Sbjct: 5   SLLNPKSLEDFLGQEHLIGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIACMLE 62

Query: 80  ---VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAME 130
              + F +T      K  DL   L N ++   + V+FIDE HRL+   +E L P ME
Sbjct: 63  RPILLFNATD----FKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115


>gi|289706214|ref|ZP_06502577.1| recombination factor protein RarA [Micrococcus luteus SK58]
 gi|289557053|gb|EFD50381.1| recombination factor protein RarA [Micrococcus luteus SK58]
          Length = 465

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/134 (35%), Positives = 69/134 (51%), Gaps = 13/134 (9%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL++  GQ   +   S L+   E     A     V+  GPPG+GKTTLA V+AR  
Sbjct: 34  MRPRTLDDVLGQRHLMRPGSPLRKLAEPDPDSAAGPSSVILYGPPGIGKTTLAHVIARAP 93

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE-DRD------VLFIDEIHRLSIIVEEILYPAMED 131
           G  F   S  + A   D+  ++   + +RD      VLF+DEIHR S   ++ L P +E+
Sbjct: 94  GRTFTELSA-ITAGVKDVRQVMEQAQRERDLYGRTTVLFLDEIHRFSKAQQDALLPGVEN 152

Query: 132 FQLDLMVG--EGPS 143
             + L+    E PS
Sbjct: 153 RWVVLVAATTENPS 166


>gi|160878660|ref|YP_001557628.1| recombination factor protein RarA [Clostridium phytofermentans
           ISDg]
 gi|160427326|gb|ABX40889.1| AAA ATPase central domain protein [Clostridium phytofermentans
           ISDg]
          Length = 444

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/138 (32%), Positives = 69/138 (50%), Gaps = 11/138 (7%)

Query: 2   MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD    +  N  ++++ + S LRP  L E  GQ       K+   A    A+ L  V+F 
Sbjct: 1   MDLFEYMRENTKEKESPLASRLRPTKLTEVVGQSHIIGEDKLLYRAI--MADKLGSVIFY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDE 113
           GPPG GKTTLA+V+A     NF+  +     K  D+ A++   +        + +LF+DE
Sbjct: 59  GPPGTGKTTLAKVIANTTSSNFQQINATSAGKK-DMEAVIEQAKQTLGMYGKKTILFVDE 117

Query: 114 IHRLSIIVEEILYPAMED 131
           IHR +   ++ L P +ED
Sbjct: 118 IHRFNKGQQDYLLPFVED 135


>gi|118586319|ref|ZP_01543772.1| ATPase, AAA family [Oenococcus oeni ATCC BAA-1163]
 gi|118433245|gb|EAV39958.1| ATPase, AAA family [Oenococcus oeni ATCC BAA-1163]
          Length = 467

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 57/192 (29%), Positives = 96/192 (50%), Gaps = 22/192 (11%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M+++  L   N        S +RP+TLE+F GQ       KV  E  +   + +  ++F 
Sbjct: 23  MIEQASLFENNSENGRPLASRVRPQTLEQFVGQENLLGPGKVLRELIEK--DQISSMIFW 80

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG--DLAALLTNLED------RDVLFID 112
           GPPG+GKTTLA+++A      F + S    A +G  ++  ++ + E+      R ++FID
Sbjct: 81  GPPGVGKTTLAEIIAHRSKAKFITFSA---ATSGIKEIRKIMKDAENNRQFGVRTIVFID 137

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN---LSR---FTL--IAATTRVG 164
           EIHR +   ++   P +E   + +++G      S +IN   LSR   F L  + ++  V 
Sbjct: 138 EIHRFNKAQQDSFLPYVEKGSI-ILIGATTENPSFEINSALLSRSKVFVLRQLKSSDIVK 196

Query: 165 LLTNPLQDRFGI 176
           LL N L++  G 
Sbjct: 197 LLENALKNPHGF 208


>gi|157165173|ref|YP_001465949.1| recombination factor protein RarA [Campylobacter concisus 13826]
 gi|112801797|gb|EAT99141.1| ATPase, AAA family protein [Campylobacter concisus 13826]
          Length = 394

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 63/122 (51%), Gaps = 10/122 (8%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           + RP+ L+E  GQ    +    FI  +K     + H +F GP G GKT+ A+ VA     
Sbjct: 7   MFRPKNLDEICGQKAVKTAFLKFIATSK-----IPHSIFYGPAGCGKTSFARAVASGANY 61

Query: 81  NFRSTSGPVIAKAGDLAALLTNLE---DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           +F    G  + K  D   +L N E   ++ + FIDEIHRLS   +E L   ME+++  L+
Sbjct: 62  DFYEFDGGNL-KIDDFRKILKNYENALNKPLFFIDEIHRLSKTQQEALLIPMENYKA-LV 119

Query: 138 VG 139
           +G
Sbjct: 120 IG 121


>gi|116491207|ref|YP_810751.1| recombination factor protein RarA [Oenococcus oeni PSU-1]
 gi|116091932|gb|ABJ57086.1| Recombination protein MgsA [Oenococcus oeni PSU-1]
          Length = 445

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 57/192 (29%), Positives = 96/192 (50%), Gaps = 22/192 (11%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M+++  L   N        S +RP+TLE+F GQ       KV  E  +   + +  ++F 
Sbjct: 1   MIEQASLFENNSENGRPLASRVRPQTLEQFVGQENLLGPGKVLRELIEK--DQISSMIFW 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG--DLAALLTNLED------RDVLFID 112
           GPPG+GKTTLA+++A      F + S    A +G  ++  ++ + E+      R ++FID
Sbjct: 59  GPPGVGKTTLAEIIAHRSKAKFITFSA---ATSGIKEIRKIMKDAENNRQFGVRTIVFID 115

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN---LSR---FTL--IAATTRVG 164
           EIHR +   ++   P +E   + +++G      S +IN   LSR   F L  + ++  V 
Sbjct: 116 EIHRFNKAQQDSFLPYVEKGSI-ILIGATTENPSFEINSALLSRSKVFVLRQLKSSDIVK 174

Query: 165 LLTNPLQDRFGI 176
           LL N L++  G 
Sbjct: 175 LLENALKNPHGF 186


>gi|302671634|ref|YP_003831594.1| recombination factor protein RarA [Butyrivibrio proteoclasticus
           B316]
 gi|302396107|gb|ADL35012.1| recombination factor protein RarA [Butyrivibrio proteoclasticus
           B316]
          Length = 440

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 11/138 (7%)

Query: 2   MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD    + +N  ++++ ++  +RPRTL+E  GQ    +  K+   A  A  + L  ++  
Sbjct: 1   MDLFDYMRQNNKEKESPLAARMRPRTLDEVVGQQHIIARDKLLYRAISA--DKLSSIILY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDE 113
           GPPG GKTTLA+V+A      F   +   IA   D+  ++   +D       + +LFIDE
Sbjct: 59  GPPGTGKTTLAKVIAGTTKAEFMQINA-TIAGKKDMEDVVNKAKDNLGMYGKKTILFIDE 117

Query: 114 IHRLSIIVEEILYPAMED 131
           IHR +   ++ L P +ED
Sbjct: 118 IHRFNKGQQDYLLPFVED 135


>gi|290890726|ref|ZP_06553796.1| hypothetical protein AWRIB429_1186 [Oenococcus oeni AWRIB429]
 gi|290479701|gb|EFD88355.1| hypothetical protein AWRIB429_1186 [Oenococcus oeni AWRIB429]
          Length = 445

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 57/192 (29%), Positives = 96/192 (50%), Gaps = 22/192 (11%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M+++  L   N        S +RP+TLE+F GQ       KV  E  +   + +  ++F 
Sbjct: 1   MIEQASLFENNSENGRPLASRVRPQTLEQFVGQENLLGPGKVLRELIEK--DQISSMIFW 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG--DLAALLTNLED------RDVLFID 112
           GPPG+GKTTLA+++A      F + S    A +G  ++  ++ + E+      R ++FID
Sbjct: 59  GPPGVGKTTLAEIIAHRSKAKFITFSA---ATSGIKEIRKIMKDAENNRQFGVRTIVFID 115

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN---LSR---FTL--IAATTRVG 164
           EIHR +   ++   P +E   + +++G      S +IN   LSR   F L  + ++  V 
Sbjct: 116 EIHRFNKAQQDSFLPYVEKGSI-ILIGATTENPSFEINSALLSRSKVFVLRQLKSSDIVK 174

Query: 165 LLTNPLQDRFGI 176
           LL N L++  G 
Sbjct: 175 LLENALKNPHGF 186


>gi|84496693|ref|ZP_00995547.1| conserved ATP/GTP binding protein [Janibacter sp. HTCC2649]
 gi|84383461|gb|EAP99342.1| conserved ATP/GTP binding protein [Janibacter sp. HTCC2649]
          Length = 457

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 55/152 (36%), Positives = 79/152 (51%), Gaps = 14/152 (9%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP +++E  GQ   +   S L+  IE +   A +L  +L+ GPPG GKTTLA +VA   
Sbjct: 27  MRPASIDEVRGQDAVLRPGSPLRRLIEGSGGTAGSLSAILW-GPPGTGKTTLAHLVATAA 85

Query: 79  GVNFRSTSGPVIAKAGDLAALLT------NLEDRD-VLFIDEIHRLSIIVEEILYPAMED 131
              F   S  V A   D+ A++       +L DR  VLF+DEIHR +   ++ L P +E 
Sbjct: 86  NREFVELSA-VTAGVKDVRAVMEAAARNRDLYDRQTVLFLDEIHRFTKAQQDALLPGVET 144

Query: 132 FQLDLMVG--EGPSARSVKINLSRFTLIAATT 161
            Q+ L+    E PS   +   LSR  LI  T+
Sbjct: 145 RQVILVAATTENPSFSVIAPLLSRSMLITLTS 176


>gi|227893680|ref|ZP_04011485.1| crossover junction endodeoxyribonuclease ATPase [Lactobacillus
           ultunensis DSM 16047]
 gi|227864540|gb|EEJ71961.1| crossover junction endodeoxyribonuclease ATPase [Lactobacillus
           ultunensis DSM 16047]
          Length = 431

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/119 (35%), Positives = 64/119 (53%), Gaps = 3/119 (2%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           L+RP TL+E  GQ    +  K   +  K        +L  GPPG GKTTLA V+A  L +
Sbjct: 10  LMRPNTLDEMIGQEHLLTPGKPLYQIIKNHVSI--SLLLWGPPGCGKTTLAHVMANTLKI 67

Query: 81  NFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
            F   +  +  K+   A +  + E+  VL +DEIHRL+  +++ L P +E+  + L+VG
Sbjct: 68  PFEKFNASIQNKSQLQALVRKHPEESFVLLLDEIHRLTKPIQDYLLPYLENGHI-LLVG 125


>gi|332670524|ref|YP_004453532.1| AAA ATPase central domain-containing protein [Cellulomonas fimi
           ATCC 484]
 gi|332339562|gb|AEE46145.1| AAA ATPase central domain protein [Cellulomonas fimi ATCC 484]
          Length = 458

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 50/136 (36%), Positives = 71/136 (52%), Gaps = 15/136 (11%)

Query: 22  LRPRTLEEFTGQVE---ACSNLKVFIEAAK--ARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           +RPR+L+E  GQ     A S L+  +E A   AR  A   V+  GPPG GKTTLA +VA 
Sbjct: 27  MRPRSLDEVAGQEHLLVAGSPLRRLVEPATEAARRAAPSSVVLWGPPGTGKTTLAYLVAT 86

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAM 129
             G  F   S  V A   D+ A++ +   R        VLF+DE+HR +   ++ L P++
Sbjct: 87  TSGRRFVELSA-VTAGVKDVRAVIDDARRRLATDGGETVLFVDEVHRFTKAQQDALLPSV 145

Query: 130 EDFQLDLMVG--EGPS 143
           E+  + L+    E PS
Sbjct: 146 ENRWVTLVAATTENPS 161


>gi|225872629|ref|YP_002754086.1| ATPase, AAA family [Acidobacterium capsulatum ATCC 51196]
 gi|225792545|gb|ACO32635.1| ATPase, AAA family [Acidobacterium capsulatum ATCC 51196]
          Length = 448

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 115/263 (43%), Gaps = 44/263 (16%)

Query: 22  LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL+EF GQ         L+V IE   A +     ++F GPPG+GKTTLA++VA   
Sbjct: 25  MRPRTLDEFRGQQHLLGLGKPLRVQIERDDAAS-----MIFWGPPGVGKTTLAKIVAETT 79

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
             +F   S  V++   ++  ++ + E       R +LF+DEIHR +   ++   P +E  
Sbjct: 80  HASFIEFSA-VLSGIKEIKQVMADAEKASTYGSRTILFVDEIHRFNRAQQDAFLPYVERG 138

Query: 133 QLDLM--VGEGPSARSVKINLSR---FTLIAATTR--VGLLTNPLQDRFGIPIRLNFYEI 185
            + L+    E PS       LSR   +TL A T    V LL     DR            
Sbjct: 139 TIRLIGATTENPSFEVNAALLSRCRVYTLQALTEDDLVSLLERAAADR------------ 186

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT-ITRE 244
                  +RG    G+    +A   IA  S G  R A   L      A+       ++RE
Sbjct: 187 -------ERGLGNMGVTFDADALALIADYSSGDARNALNALEVAAKLAQSREENPRVSRE 239

Query: 245 IADAALLR--LAIDKMGFDQLDL 265
           +A  AL +  L  DK G +  +L
Sbjct: 240 LAQEALQQRVLLYDKQGEEHYNL 262


>gi|87125265|ref|ZP_01081111.1| putative ATPase, AAA family protein [Synechococcus sp. RS9917]
 gi|86167034|gb|EAQ68295.1| putative ATPase, AAA family protein [Synechococcus sp. RS9917]
          Length = 738

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 96/215 (44%), Gaps = 40/215 (18%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPR L++F GQ    +  ++   A  A  + + ++L  GPPG+GKTTLA+++A     +
Sbjct: 24  LRPRDLDDFVGQGAILAEGRLLRRAIAA--DRVGNLLLHGPPGVGKTTLARIIANHTRAH 81

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F S +  V+A   +L A +            R +LFIDE+HR +   ++ L P +E+  L
Sbjct: 82  FSSLNA-VLAGVKELRAEVDAARQRLERHGLRTILFIDEVHRFNSAQQDALLPWVENGTL 140

Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            L+    E P     K  +SR  L                      RL   E EDL  ++
Sbjct: 141 TLIGATTENPYFEVNKALVSRSRL---------------------FRLQALEAEDLHRLL 179

Query: 193 Q-------RGAKLTGLAVTDEAACEIAMRSRGTPR 220
           Q       RG     ++VT EAA  +   + G  R
Sbjct: 180 QRALSDSERGYGNRAVSVTAEAAAHLVDVANGDAR 214


>gi|225377756|ref|ZP_03754977.1| hypothetical protein ROSEINA2194_03407 [Roseburia inulinivorans DSM
           16841]
 gi|225210433|gb|EEG92787.1| hypothetical protein ROSEINA2194_03407 [Roseburia inulinivorans DSM
           16841]
          Length = 443

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/131 (35%), Positives = 66/131 (50%), Gaps = 14/131 (10%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           +N  +E    S LRP TL+E  GQ       K+   A KA  + L  ++  GPPG GKTT
Sbjct: 10  QNREKESPLASRLRPATLDEMVGQQHIIGKDKLLYRAIKA--DKLSSIILYGPPGTGKTT 67

Query: 70  LAQVVARELGVNF---RSTSG------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           LA+V+A      F    +TS        VIA+A +   +      + +LFIDEIHR +  
Sbjct: 68  LAKVIANTTSAEFLQINATSAGKKDMEDVIAQAKNNQGMYGK---KTILFIDEIHRFNKG 124

Query: 121 VEEILYPAMED 131
            ++ L P +ED
Sbjct: 125 QQDYLLPFVED 135


>gi|78188604|ref|YP_378942.1| recombination factor protein RarA [Chlorobium chlorochromatii CaD3]
 gi|78170803|gb|ABB27899.1| Recombination protein MgsA [Chlorobium chlorochromatii CaD3]
          Length = 453

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/137 (35%), Positives = 72/137 (52%), Gaps = 14/137 (10%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPR L+E  GQ   V A + L+ F+E+ +     +  V+F G PG GKTTLA++ A  L
Sbjct: 37  VRPRMLDEVAGQQHLVGANAPLRRFLESGQ-----MPSVIFWGAPGCGKTTLAEICASTL 91

Query: 79  GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             +F   S        + KA D+A  +     R +LFIDEIHR +   ++ L  A+E   
Sbjct: 92  QCHFEQLSAVDAGVKEVRKALDIATRVRQAGQRCLLFIDEIHRFNKSQQDTLLHALEQ-G 150

Query: 134 LDLMVGEGPSARSVKIN 150
           L L++G      S ++N
Sbjct: 151 LILLIGATTENPSFEVN 167


>gi|292670832|ref|ZP_06604258.1| replication-associated recombination protein A [Selenomonas noxia
           ATCC 43541]
 gi|292647453|gb|EFF65425.1| replication-associated recombination protein A [Selenomonas noxia
           ATCC 43541]
          Length = 472

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 111/237 (46%), Gaps = 42/237 (17%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV--- 57
           M ++ GL  R   Q  A+   +RP++LEEF GQ     + KV     ++     DH+   
Sbjct: 32  MDEQGGLFERTAYQPLAE--RVRPQSLEEFVGQEHLLGSGKVLRRLIES-----DHITSM 84

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFI 111
           +F GPPG+GKTTLAQ++A +    F + S  V +   D+  ++   +      DR ++F+
Sbjct: 85  IFWGPPGVGKTTLAQIIAAQTKAKFITFSA-VTSGIKDIRTVMQEADRRRIYGDRIIVFV 143

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DEIHR +   ++   P +E   + +++G      S +IN    + + +  RV +L     
Sbjct: 144 DEIHRFNKAQQDAFLPFVEKGSI-VLIGATTENPSFEIN----SALLSRCRVFVLQG--- 195

Query: 172 DRFGIPIRLNFYEIEDLKTIVQ------RGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
                        I+D+K ++Q      R  ++  + ++DE    IA  + G  R A
Sbjct: 196 -----------LTIDDIKRLLQHALSSDRELRVLRIHLSDEGIAAIAAFANGDARSA 241


>gi|197118824|ref|YP_002139251.1| recombination factor protein RarA [Geobacter bemidjiensis Bem]
 gi|197088184|gb|ACH39455.1| stalled replication fork rescue ATPase [Geobacter bemidjiensis Bem]
          Length = 434

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 119/258 (46%), Gaps = 37/258 (14%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPR++ E+ GQ   V     L+  IE+ +     L  ++F GPPG GKTTLA+++A   
Sbjct: 19  MRPRSMAEYLGQGHLVGEGKMLRRLIESDR-----LTSLIFWGPPGSGKTTLARIIANAT 73

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAME- 130
             +F   S  +++   ++  ++   ED       R +LF+DEIHR +   ++   P +E 
Sbjct: 74  RSHFIFFSA-IMSGIKEIREVVKEAEDTLKYQGKRTILFVDEIHRFNKSQQDAFLPHVER 132

Query: 131 -DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             F +     E PS   +   LSR  +        L+  PL D   + I      +E+  
Sbjct: 133 GTFTIIGATTENPSFEVIAPLLSRCKV--------LVLQPLSDEDLLKI------LENAL 178

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
              +RG     L+ T EA   +A ++ G  R+A   L  +   + +AH   IT E A  A
Sbjct: 179 ADRERGLGELELSATAEALAFMAEQAAGDARVA---LNTLETASRLAHQGEITLESAREA 235

Query: 250 LLR--LAIDKMGFDQLDL 265
           + +  L  DK G +  ++
Sbjct: 236 VQKKPLLYDKGGEEHYNV 253


>gi|227496185|ref|ZP_03926491.1| crossover junction endodeoxyribonuclease ATPase [Actinomyces
           urogenitalis DSM 15434]
 gi|226834268|gb|EEH66651.1| crossover junction endodeoxyribonuclease ATPase [Actinomyces
           urogenitalis DSM 15434]
          Length = 459

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 51/137 (37%), Positives = 70/137 (51%), Gaps = 16/137 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAK---ARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +RPRTL+E  GQ   + A S L+  +  A         +  V+  GPPG GKTTLA +VA
Sbjct: 26  MRPRTLDELVGQGHLLTAGSPLRRLVCPADDGGVAGAGVSSVILWGPPGTGKTTLAYLVA 85

Query: 76  RELGVNFRSTSGPVIAKAGDLAA-------LLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           R  G  F   S  V A   D+ A       LL +  +  VLF+DE+HR S   ++ L P+
Sbjct: 86  RGSGRRFVELSA-VTAGVKDVRAVVEAARRLLASSGEETVLFVDEVHRFSRSQQDALLPS 144

Query: 129 MEDFQLDLMVG--EGPS 143
           +E+  + LM    E PS
Sbjct: 145 VENRWVTLMAATTENPS 161


>gi|116334669|ref|YP_796196.1| recombination factor protein RarA [Lactobacillus brevis ATCC 367]
 gi|116100016|gb|ABJ65165.1| Recombination protein MgsA [Lactobacillus brevis ATCC 367]
          Length = 439

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 59/197 (29%), Positives = 99/197 (50%), Gaps = 18/197 (9%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           ++G L  N  +     S +RP+TL++F GQ       K+  E  +   + +  ++F GPP
Sbjct: 2   KQGSLFENSQRNTPLASRVRPQTLDQFVGQAHLLGPGKILRELIEN--DQVSSMIFWGPP 59

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-DRD-----VLFIDEIHRL 117
           G+GKTTLA+++AR+    F S S  V +    +  ++   E DR+     ++F+DEIHR 
Sbjct: 60  GVGKTTLAEIIARQTQATFLSFSA-VDSSISKIKKIMHQAEADREIGEQTIVFVDEIHRF 118

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN---LSR---FTLIA-ATTRVG-LLTNP 169
           +   ++   P +E   + +++G      S ++N   LSR   F L A AT  +  LL N 
Sbjct: 119 NKAQQDAFLPYVERGSI-ILIGATTENPSFEVNSALLSRCKVFVLKALATADIDQLLRNA 177

Query: 170 LQDRFGIPIRLNFYEIE 186
           L +  G   R+   + E
Sbjct: 178 LTNPAGFSGRVTIGDAE 194


>gi|320538018|ref|ZP_08037922.1| recombination factor protein Rar [Treponema phagedenis F0421]
 gi|320145134|gb|EFW36846.1| recombination factor protein Rar [Treponema phagedenis F0421]
          Length = 732

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 64/117 (54%), Gaps = 10/117 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR L+E+ GQ       ++   A +A  + L  V+F GPPG GKTTLA+V+A     N
Sbjct: 20  MRPRNLDEYIGQEHIVGKGRLLRRAIQA--DRLSSVIFFGPPGTGKTTLARVIANHTKSN 77

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131
           F S +  V+A    +   ++  E+       R +LF+DE+HR +   ++ L P +E+
Sbjct: 78  FLSLNA-VLAGVQQIREAISKAEENKQLYDRRTILFVDEVHRWNRAQQDALLPWVEN 133


>gi|153953934|ref|YP_001394699.1| recombination factor protein RarA [Clostridium kluyveri DSM 555]
 gi|219854548|ref|YP_002471670.1| hypothetical protein CKR_1205 [Clostridium kluyveri NBRC 12016]
 gi|146346815|gb|EDK33351.1| Predicted helicase subunit of Holliday junction resolvase
           [Clostridium kluyveri DSM 555]
 gi|219568272|dbj|BAH06256.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 437

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 61/116 (52%), Gaps = 10/116 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP TLEEF GQ       K+   A     + +  V+F GPPG+GKTTLA+++A     N
Sbjct: 22  MRPETLEEFIGQEHILGKDKMLYRAI--VTDNISSVIFYGPPGVGKTTLARIIANTTKAN 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAME 130
           F   S  V +   D+  ++   E+       + +LFIDEIHR +   ++ +  A+E
Sbjct: 80  FYELSA-VNSGTADVKKIIKEAENNLKFYSKKTILFIDEIHRFNKAQQDSVLNAVE 134


>gi|317128226|ref|YP_004094508.1| ATPase AAA [Bacillus cellulosilyticus DSM 2522]
 gi|315473174|gb|ADU29777.1| AAA ATPase central domain protein [Bacillus cellulosilyticus DSM
           2522]
          Length = 442

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/119 (36%), Positives = 65/119 (54%), Gaps = 10/119 (8%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           S +RPRT+ E  GQ E      +   A +A  + L  ++F GPPG GKTTLA+V+A    
Sbjct: 18  SRMRPRTIHEVIGQKEIVGEGTLLRRAIEA--DQLTPMIFHGPPGTGKTTLAKVIANSTS 75

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131
            +F   +  VIA   D+  +++  ++R        VLFIDEIHR +   ++ L P +ED
Sbjct: 76  AHFEQLNA-VIAGIKDVREVVSRAKERLKYDQEKTVLFIDEIHRFNKGQQDALLPFVED 133


>gi|32034563|ref|ZP_00134719.1| COG2256: ATPase related to the helicase subunit of the Holliday
           junction resolvase [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
          Length = 428

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 83/168 (49%), Gaps = 22/168 (13%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL E+ GQ   +E    L+  IEA  + +     ++F GPPG GKTTLA+++A   
Sbjct: 1   MRPRTLAEYIGQAHLIEEGKPLRRAIEAGHSHS-----MIFWGPPGTGKTTLAEIIAHHF 55

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
                     TSG   I +A + A L      R +LF+DE+HR +   ++   P +ED  
Sbjct: 56  DAEVERLSAVTSGVKEIREAIERAKLNRQTGRRTLLFVDEVHRFNKSQQDAFLPHIEDGT 115

Query: 134 LDLMVGEGPSARSVKIN---LSRFTL-----IAATTRVGLLTNPLQDR 173
           + + +G      S ++N   LSR  +     + A     +LTN L D+
Sbjct: 116 I-IFIGATTENPSFELNNALLSRAKIYILKPLQAVEIAQVLTNALYDK 162


>gi|319778382|ref|YP_004129295.1| ATPase, AAA family [Taylorella equigenitalis MCE9]
 gi|317108406|gb|ADU91152.1| ATPase, AAA family [Taylorella equigenitalis MCE9]
          Length = 458

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 86/328 (26%), Positives = 132/328 (40%), Gaps = 64/328 (19%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKA-RAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           LRP+TLEE  GQ       K    A K+ R  ++   +F GPPG+GKTTLA+++A     
Sbjct: 33  LRPKTLEEVVGQKHLLDKGKPLYTAFKSGRPHSM---IFWGPPGVGKTTLARLMASGFDA 89

Query: 81  NFRSTSGPVIAKAGDL------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
            F + S  V+    D+      A    +L  + +LF+DE+HR +   ++   P +E    
Sbjct: 90  KFIAISA-VLGGVKDIRDAVASAKRAQDLGQKTILFVDEVHRFNKAQQDAFLPYVES--- 145

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP-LQDRFGIPIRLNFYEIE-----DL 188
                              FT I ATT      NP  +    +  R   Y +E     DL
Sbjct: 146 -----------------GLFTFIGATTE-----NPSFEVNSALLSRARVYVLEPLNEIDL 183

Query: 189 KTIVQRGAKLTGLAVTDEAACE-IAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           K + +R +K       D  A + I   S G  R   R L  +    E+     +  E+  
Sbjct: 184 KQLYERASKFYPNTKIDLQALDLIVHWSDGDAR---RFLNNL----EIVLESAVVEEVGI 236

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFG-GGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           A    +            +YLT  AR F  GG V  + ISA     R +  D    +  +
Sbjct: 237 ATKEHIE-----------KYLTQNARRFDKGGEVFYDQISALHKSVRGSDPDAALYWFCR 285

Query: 307 --QGFIQRTPRGRLLMPIAWQHLGIDIP 332
              G +  +   R ++ +AW+ +G+  P
Sbjct: 286 MLDGGVDVSYLSRRIVRMAWEDIGLADP 313


>gi|124021978|ref|YP_001016285.1| recombination factor protein RarA/unknown domain fusion protein
           [Prochlorococcus marinus str. MIT 9303]
 gi|123962264|gb|ABM77020.1| putative ATPase, AAA family protein [Prochlorococcus marinus str.
           MIT 9303]
          Length = 735

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 52/145 (35%), Positives = 76/145 (52%), Gaps = 12/145 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPRTLEEF GQ    +  ++   A  A  + + ++L  GPPG+GKTTLA+++A     N
Sbjct: 24  LRPRTLEEFVGQGSILAEGRLLRRAIAA--DRVGNLLLHGPPGVGKTTLARIIAGHTRAN 81

Query: 82  FRSTSGPVIAKAGDLA----ALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F S +  V+A   +L     A    LE    R +LFIDE+HR +   ++ L P +E+  +
Sbjct: 82  FSSLNA-VLAGVKELRQEVDAAKQRLERHGLRTILFIDEVHRFNSAQQDALLPWVENGTV 140

Query: 135 DLM--VGEGPSARSVKINLSRFTLI 157
            L+    E P     K  +SR  L 
Sbjct: 141 TLIGATTENPYFEVNKALVSRSRLF 165


>gi|33863885|ref|NP_895445.1| recombination factor protein RarA/unknown domain fusion protein
           [Prochlorococcus marinus str. MIT 9313]
 gi|33635468|emb|CAE21793.1| putative ATPase, AAA family [Prochlorococcus marinus str. MIT 9313]
          Length = 735

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 52/145 (35%), Positives = 76/145 (52%), Gaps = 12/145 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPRTLEEF GQ    +  ++   A  A  + + ++L  GPPG+GKTTLA+++A     N
Sbjct: 24  LRPRTLEEFVGQGSILAEGRLLRRAIAA--DRVGNLLLHGPPGVGKTTLARIIAGHTRAN 81

Query: 82  FRSTSGPVIAKAGDLA----ALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F S +  V+A   +L     A    LE    R +LFIDE+HR +   ++ L P +E+  +
Sbjct: 82  FSSLNA-VLAGVKELRQEVDAAKQRLERHGLRTILFIDEVHRFNSAQQDALLPWVENGTV 140

Query: 135 DLM--VGEGPSARSVKINLSRFTLI 157
            L+    E P     K  +SR  L 
Sbjct: 141 TLIGATTENPYFEVNKALVSRSRLF 165


>gi|323142310|ref|ZP_08077142.1| replication-associated recombination protein A
           [Phascolarctobacterium sp. YIT 12067]
 gi|322413194|gb|EFY04081.1| replication-associated recombination protein A
           [Phascolarctobacterium sp. YIT 12067]
          Length = 428

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 50/149 (33%), Positives = 78/149 (52%), Gaps = 20/149 (13%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP  L +F GQ   V A S L+  IE      + L  VLF GPPG GKTTLA+V+A   
Sbjct: 23  MRPERLSDFVGQESAVGAGSPLRRMIER-----DVLQSVLFYGPPGTGKTTLAKVIAHVT 77

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131
           G  F + +  V +   +L  L+   ++       R ++FIDEIHR +   +++L P +E+
Sbjct: 78  GEKFEAINA-VSSGVPELRKLIAKAQEDRRSGRGRTIVFIDEIHRFNKAQQDVLLPYVEN 136

Query: 132 FQLDLMVGEGPSARSVKIN---LSRFTLI 157
             + +++G        +IN   LSR  ++
Sbjct: 137 GTI-VLIGATTENPFFEINSPLLSRMKVV 164


>gi|315651448|ref|ZP_07904471.1| replication-associated recombination protein A [Eubacterium
           saburreum DSM 3986]
 gi|315486268|gb|EFU76627.1| replication-associated recombination protein A [Eubacterium
           saburreum DSM 3986]
          Length = 440

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 60/118 (50%), Gaps = 8/118 (6%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           S LRP +L+   GQ       K    A KA  + L  ++F GPPG GKTT+A+V+A    
Sbjct: 20  SRLRPDSLDMVVGQEHILGKDKFLYRAIKA--DKLSSIIFFGPPGCGKTTIAKVIANTTK 77

Query: 80  VNFRSTSGPVIAKAGDLAAL------LTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            NF+  +     K     A+      ++  + + +LFIDEIHR +   ++ L P +ED
Sbjct: 78  SNFKQINATTAGKKEMEEAISEAKISISMYKKKTILFIDEIHRFNKSQQDYLLPFVED 135


>gi|255659708|ref|ZP_05405117.1| replication-associated recombination protein A [Mitsuokella
           multacida DSM 20544]
 gi|260848282|gb|EEX68289.1| replication-associated recombination protein A [Mitsuokella
           multacida DSM 20544]
          Length = 462

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 77/149 (51%), Gaps = 20/149 (13%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPR  +EF GQ EA      L+  IE      + +  ++F GPPG GKTTLAQ++A   
Sbjct: 46  MRPRNFDEFVGQQEAVGRGHFLRRMIEM-----DQIPSIIFYGPPGTGKTTLAQMIAAMT 100

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131
              F   +  V A   DL  ++   ++       R ++FIDEIHR +   +++L P +ED
Sbjct: 101 DSAFEKLNA-VSAGISDLRRIVKEADEARRYYQRRTIVFIDEIHRFNKSQQDVLLPYVED 159

Query: 132 FQLDLMVGEGPSARSVKIN---LSRFTLI 157
            +L +++G        ++N   LSR  ++
Sbjct: 160 GRL-ILIGATTENPFFEVNHALLSRVRIV 187


>gi|156741065|ref|YP_001431194.1| recombination factor protein RarA [Roseiflexus castenholzii DSM
           13941]
 gi|156232393|gb|ABU57176.1| AAA ATPase central domain protein [Roseiflexus castenholzii DSM
           13941]
          Length = 544

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 70/136 (51%), Gaps = 11/136 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR L+EF GQ       K+   A     +AL  ++  GPPG GKTTLA+++A     +
Sbjct: 27  MRPRALDEFVGQDHIVGEGKLLRRAITN--DALFSIILWGPPGSGKTTLARIIADTTHAH 84

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F   S  V A   DL  ++   +D       R ++FIDEIHR +   ++ + P +ED  +
Sbjct: 85  FEQLSA-VSAGVADLRRVVKEAQDRLGMFQQRTIVFIDEIHRFNKAQQDAILPYVEDGTI 143

Query: 135 DLMVGEGPSARSVKIN 150
            +++G      S ++N
Sbjct: 144 -ILIGATTENPSFEVN 158


>gi|317122073|ref|YP_004102076.1| recombination protein MgsA [Thermaerobacter marianensis DSM 12885]
 gi|315592053|gb|ADU51349.1| Recombination protein MgsA [Thermaerobacter marianensis DSM 12885]
          Length = 500

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 63/116 (54%), Gaps = 10/116 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRTLEEF GQ       ++   A +A  + L  ++  GPPG GKTTLA+++AR    +
Sbjct: 37  MRPRTLEEFVGQQHLVGPGRLLRRAIEA--DRLGSIILWGPPGSGKTTLARIIARTTRAH 94

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAME 130
           F   +  V A   DL  ++   ++R        VLF+DE+HR +   ++ L P +E
Sbjct: 95  FEPLNA-VTAGVADLRRVVEEAKERRALEGRSTVLFVDEVHRWNRAQQDALLPHLE 149


>gi|167039928|ref|YP_001662913.1| recombination factor protein RarA [Thermoanaerobacter sp. X514]
 gi|300915273|ref|ZP_07132587.1| AAA ATPase central domain protein [Thermoanaerobacter sp. X561]
 gi|307724748|ref|YP_003904499.1| AAA ATPase central domain-containing protein [Thermoanaerobacter
           sp. X513]
 gi|166854168|gb|ABY92577.1| AAA ATPase, central domain protein [Thermoanaerobacter sp. X514]
 gi|300888549|gb|EFK83697.1| AAA ATPase central domain protein [Thermoanaerobacter sp. X561]
 gi|307581809|gb|ADN55208.1| AAA ATPase central domain protein [Thermoanaerobacter sp. X513]
          Length = 443

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 121/260 (46%), Gaps = 38/260 (14%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+TL+EF GQ       K+  E  +   + +  ++  GPPG+GKTTLA ++A      
Sbjct: 23  MRPKTLDEFVGQEHLLGKGKLLRELIEK--DNITSMILWGPPGVGKTTLAMIIANMTNSK 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F + S  V++   ++  ++   E       R V+FIDEIHR +   ++   P +E   + 
Sbjct: 81  FVTFSA-VLSGIKEIKEIMAKAELDAMYGTRTVVFIDEIHRFNKAQQDAFLPHVEKGNI- 138

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           +++G      S ++N    + + + ++V  +  PL +             EDL  +++R 
Sbjct: 139 ILIGATTENPSFEVN----SALLSRSKV-FVMKPLTE-------------EDLLILLKRA 180

Query: 196 AK-------LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE--IA 246
            K       +  + +TDE   +IA+ + G  R+A   L      A+V   + I  +  +A
Sbjct: 181 LKDEQNGFGMYKIGITDEQLKKIALFANGDARVALNTLEIAVMGAKVIEGERIVTDDILA 240

Query: 247 DAALLR-LAIDKMGFDQLDL 265
           DA   + L  DK G +  +L
Sbjct: 241 DAMQKKTLLYDKQGEEHYNL 260


>gi|307720121|ref|YP_003891261.1| Recombination protein MgsA [Sulfurimonas autotrophica DSM 16294]
 gi|306978214|gb|ADN08249.1| Recombination protein MgsA [Sulfurimonas autotrophica DSM 16294]
          Length = 391

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 63/116 (54%), Gaps = 10/116 (8%)

Query: 21  LLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           LLRP + +E  GQ    +    L++  E      EAL H  F GP G+GKT+LA+V+A+ 
Sbjct: 6   LLRPSSFDEIIGQEHLSAEDAPLRILCEK-----EALGHSFFYGPAGVGKTSLARVIAKT 60

Query: 78  LGVNFR--STSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
           + + F   + +   I +   +     N   + ++FIDE+HRLS   +E+L P ME+
Sbjct: 61  MQLPFYEFNATSLKIEQLRKIFEQYKNALQKPLIFIDEVHRLSKNQQEVLLPVMEN 116


>gi|315924180|ref|ZP_07920406.1| replication-associated recombination protein A [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315622582|gb|EFV02537.1| replication-associated recombination protein A [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 449

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 79/160 (49%), Gaps = 20/160 (12%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP TL  F GQ +     K+      A  + L   +F GPPG GKTTLA+++A +    
Sbjct: 24  MRPETLAHFYGQDQIVGKGKLLTRLITA--DKLTSAIFYGPPGTGKTTLAKIIASQTKAA 81

Query: 82  FRS----TSGP-----VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           F S    TSG      VIA+A    A       + +LFIDE+HR +   ++ L P++ED 
Sbjct: 82  FHSLNAVTSGKKEISEVIAEARQNMAFYGR---KTILFIDEVHRFNKAQQDALLPSVED- 137

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
            L +++G        +IN +   LI+ +T      NPL D
Sbjct: 138 GLIILIGATTENPYFEINAA---LISRSTIFEF--NPLSD 172


>gi|300087469|ref|YP_003757991.1| ATPase central domain-containing protein [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527202|gb|ADJ25670.1| AAA ATPase central domain protein [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 442

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 50/144 (34%), Positives = 73/144 (50%), Gaps = 18/144 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL+E+ GQ   V   + L+  +E+ K     L  ++  GPPG GKTTLA ++AR  
Sbjct: 24  MRPRTLDEYVGQEHLVGQGTALRRALESGK-----LPSLILWGPPGSGKTTLANLLARAT 78

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131
             +F   S  V A   DL  ++     R        +LFIDEIHR +   ++ + P +ED
Sbjct: 79  SAHFSPVSA-VSAGVADLRKVIEEARQRRLGEGRGTILFIDEIHRFNKSQQDTILPFVED 137

Query: 132 FQLDLM--VGEGPSARSVKINLSR 153
             + L+    E PS   +   LSR
Sbjct: 138 GTVVLIGATTENPSFEVISPLLSR 161


>gi|78213812|ref|YP_382591.1| fused recombination factor protein RarA/unknown domain-containing
           protein [Synechococcus sp. CC9605]
 gi|78198271|gb|ABB36036.1| ATPase [Synechococcus sp. CC9605]
          Length = 721

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 50/145 (34%), Positives = 78/145 (53%), Gaps = 12/145 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRTLEEF GQ    ++ ++   A KA  + + +++  GPPG+GKTTLA+++A     +
Sbjct: 24  MRPRTLEEFEGQSGILADGRLLRRAIKA--DRVGNLILHGPPGVGKTTLARIIANHTRAH 81

Query: 82  FRSTSGPVIAKAGDLA----ALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F S +  V+A   +L     A    LE    R +LFIDE+HR +   ++ L P +E+  +
Sbjct: 82  FSSLNA-VLAGVKNLRTEVDAARQRLERHGLRTILFIDEVHRFNSAQQDALLPWVENGTV 140

Query: 135 DLM--VGEGPSARSVKINLSRFTLI 157
            L+    E P     K  +SR  L 
Sbjct: 141 TLIGATTENPYFEVNKALVSRSRLF 165


>gi|126207922|ref|YP_001053147.1| recombination factor protein RarA [Actinobacillus pleuropneumoniae
           L20]
 gi|126096714|gb|ABN73542.1| hypothetical protein APL_0438 [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
          Length = 446

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 83/168 (49%), Gaps = 22/168 (13%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL E+ GQ   +E    L+  IEA  + +     ++F GPPG GKTTLA+++A   
Sbjct: 19  MRPRTLAEYIGQAHLIEEGKPLRRAIEAGHSHS-----MIFWGPPGTGKTTLAEIIAHHF 73

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
                     TSG   I +A + A L      R +LF+DE+HR +   ++   P +ED  
Sbjct: 74  DAEVERLSAVTSGVKEIREAIERAKLNRQTGRRTLLFVDEVHRFNKSQQDAFLPHIEDGT 133

Query: 134 LDLMVGEGPSARSVKIN---LSRFTL-----IAATTRVGLLTNPLQDR 173
           + + +G      S ++N   LSR  +     + A     +LTN L D+
Sbjct: 134 I-IFIGATTENPSFELNNALLSRAKIYILKPLQAVEIAQVLTNALYDK 180


>gi|295110953|emb|CBL27703.1| Recombination protein MgsA [Synergistetes bacterium SGP1]
          Length = 446

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 64/196 (32%), Positives = 95/196 (48%), Gaps = 34/196 (17%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVE----ACSNLKVFIEAAKARAEALDHV 57
           M+   L     SQ  A  + +RPRTL+EF GQ       C  L+  IE         DHV
Sbjct: 1   MEERSLFEDEASQPLA--ARMRPRTLDEFVGQTHLLGPGCV-LRRLIEE--------DHV 49

Query: 58  ---LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED------RDV 108
              +F GPPG+GKTTLA V+A+     F + S  V +   ++ A++   E+      R +
Sbjct: 50  SSMIFWGPPGVGKTTLAGVIAQRTRAAFINFSA-VTSGIKEIRAVMQRAEEGRRLGGRTI 108

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN---LSR---FTLIAATTR 162
           +F+DEIHR +   ++   P +E   + +++G      S ++N   LSR   F L A T  
Sbjct: 109 VFVDEIHRFNKAQQDAFLPFVERGSI-VLIGATTENPSFEVNGALLSRCRVFVLKALTAE 167

Query: 163 --VGLLTNPLQDRFGI 176
              GLL+  L D  G+
Sbjct: 168 ELAGLLSRALSDPRGL 183


>gi|110004993|emb|CAK99324.1| hypothetical dna helicase probably c-terminal truncated protein
           [Spiroplasma citri]
          Length = 106

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 39/119 (32%), Positives = 58/119 (48%), Gaps = 30/119 (25%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
            RP   E++ GQ     NLK+ I A++ +   L H+LF+G  G+GKT L Q+        
Sbjct: 6   FRPDNFEKYIGQESIKINLKIMIAASQKQQLPLKHMLFIGCSGMGKTCLMQI-------- 57

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
                                 +  D++FIDEIH +S  V E LYP +ED  L+L++G+
Sbjct: 58  ----------------------KTFDLVFIDEIHAISQEVSEALYPVLEDNCLNLILGK 94


>gi|327189703|gb|EGE56850.1| putative ATPase protein [Rhizobium etli CNPAF512]
          Length = 438

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 48/138 (34%), Positives = 74/138 (53%), Gaps = 16/138 (11%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL E TGQ     +   LK  IE+      +L  ++F GPPG GKTT+A++++ E 
Sbjct: 24  LRPKTLAEVTGQDHLTGDDGVLKRMIESG-----SLGSMIFWGPPGTGKTTVARLLSGEA 78

Query: 79  GVNFRSTSGPVIAKAGDL-----AALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMEDF 132
           G+ F   S  + +   DL      A L  ++ R  +LF+DEIHR +   ++   P MED 
Sbjct: 79  GLAFEQISA-IFSGVADLKKVFETARLRRMDGRQTLLFVDEIHRFNRAQQDSFLPVMEDG 137

Query: 133 QLDLMVGEGPSARSVKIN 150
            + ++VG      S ++N
Sbjct: 138 TV-ILVGATTENPSFELN 154


>gi|315185392|gb|EFU19164.1| Recombination protein MgsA [Spirochaeta thermophila DSM 6578]
          Length = 741

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 76/264 (28%), Positives = 119/264 (45%), Gaps = 40/264 (15%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRTL+EF GQ       ++   A +A  + L  V+F GPPG GKTTLA+V+A      
Sbjct: 23  MRPRTLDEFVGQEHILGPGRLLRRAIQA--DRLSSVIFYGPPGCGKTTLARVIANHTKSA 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F S +  V++   ++ A +            R +LF+DE+HR +   ++ L P +E+  +
Sbjct: 81  FLSLNA-VLSGVQEVRAAIEKARQEMAYHGRRTILFVDEVHRWNKAQQDALLPWVENGTV 139

Query: 135 DLM--VGEGP--SARSVKINLSRFTLIAATTRVGL-------LTNPLQDRFGIPIRLNFY 183
            L+    + P     S  I+ SR   +   TR  L       L++P +      I L+  
Sbjct: 140 ILIGATTQNPYFEVNSALISRSRIFQLKPLTRQHLRTIAERALSDPERGYGKYRIILDED 199

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            +E L T+    A+    A+  E A E    +   P              EV H   ITR
Sbjct: 200 ALEHLITVADGDARTLLSAI--ELAVETTPDTFPPPE------------GEVIH---ITR 242

Query: 244 EIADAALLRLAI--DKMGFDQLDL 265
           E+A+ ++ R A+  DK G    D+
Sbjct: 243 EVAEDSIQRKAVLYDKEGDFHYDI 266


>gi|229543042|ref|ZP_04432102.1| AAA ATPase central domain protein [Bacillus coagulans 36D1]
 gi|229327462|gb|EEN93137.1| AAA ATPase central domain protein [Bacillus coagulans 36D1]
          Length = 442

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 101/210 (48%), Gaps = 28/210 (13%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L+EF GQ       KV  E  +   + L  ++F GPPG+GKTTLA+++A +    
Sbjct: 21  VRPKNLDEFVGQKHLIGKGKVLREMIEH--DRLSSMIFWGPPGVGKTTLAKIIANQTQSE 78

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F + S  V +   D+  ++   E+R       +LF+DEIHR +   ++   P +E+  + 
Sbjct: 79  FINFSA-VTSGIKDIRNVMKEAEERRQLGEKTILFLDEIHRFNKAQQDAFLPYVENGSI- 136

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL--KTIVQ 193
           +++G      S ++N    + + + T+V +L            +L   EI +L  + IV 
Sbjct: 137 ILIGATTENPSFEVN----SALLSRTKVFVLH-----------KLTSSEIVELLKQAIVN 181

Query: 194 -RGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
             G  L  + + D+    IA  S G  R A
Sbjct: 182 PHGYGLQKIEIEDQTLLAIAEFSDGDARTA 211


>gi|167037129|ref|YP_001664707.1| recombination factor protein RarA [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320115548|ref|YP_004185707.1| AAA ATPase central domain-containing protein [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
 gi|166855963|gb|ABY94371.1| AAA ATPase, central domain protein [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319928639|gb|ADV79324.1| AAA ATPase central domain protein [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 443

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 121/260 (46%), Gaps = 38/260 (14%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+TL+EF GQ       K+  E  +   + +  ++  GPPG+GKTTLA ++A      
Sbjct: 23  MRPKTLDEFVGQEHLLGKGKLLRELIEK--DNITSMILWGPPGVGKTTLAMIIANMTNSK 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F + S  V++   ++  ++   E       R V+FIDEIHR +   ++   P +E   + 
Sbjct: 81  FITFSA-VLSGIKEIKEIMAKAELDAMYGTRTVVFIDEIHRFNKAQQDAFLPHVEKGNI- 138

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           +++G      S ++N    + + + ++V  +  PL +             EDL  +++R 
Sbjct: 139 ILIGATTENPSFEVN----SALLSRSKV-FVMKPLTE-------------EDLLILLKRA 180

Query: 196 AK-------LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE--IA 246
            K       +  + +TDE   +IA+ + G  R+A   L      A+V   + I  +  +A
Sbjct: 181 LKDEQNGFGMYKIGITDEQLKKIALFANGDARVALNTLEIAVMGAKVIEGERIVTDDILA 240

Query: 247 DAALLR-LAIDKMGFDQLDL 265
           DA   + L  DK G +  +L
Sbjct: 241 DAMQKKTLLYDKQGEEHYNL 260


>gi|57233987|ref|YP_182021.1| recombination factor protein RarA [Dehalococcoides ethenogenes 195]
 gi|57224435|gb|AAW39492.1| ATPase, AAA family [Dehalococcoides ethenogenes 195]
          Length = 457

 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 65/215 (30%), Positives = 107/215 (49%), Gaps = 29/215 (13%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP  L EF GQ   +     L++ IE  K     +  ++F GPPG GKTTLA ++AR L
Sbjct: 27  MRPEGLSEFVGQDHLIGEGRALRLAIEGDK-----IPSLIFWGPPGSGKTTLANIIARRL 81

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131
             +F + S  V A   DL  ++    +       R +LFIDEIHR +   ++ + P +ED
Sbjct: 82  DAHFSALSA-VSAGVADLRRVVEEARERLKFERRRTILFIDEIHRFNKSQQDAILPYVED 140

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
             + +++G      S ++N    + + +  +V +L NPL ++  I + L    +ED   +
Sbjct: 141 GTV-VLIGATTENPSFEVN----SALLSRAQVYVL-NPLSEK-EISLILK-RSLEDPSGL 192

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
               A+L      +EA   I+  ++G  RIA  +L
Sbjct: 193 GNYHARL-----LEEAEKHISSFAQGDARIALNIL 222


>gi|293402112|ref|ZP_06646251.1| ATPase, AAA family [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304504|gb|EFE45754.1| ATPase, AAA family [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 447

 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 60/192 (31%), Positives = 94/192 (48%), Gaps = 26/192 (13%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M++E L  +++  +D   S LRP++LE++ GQ       KV     +   + +  ++F G
Sbjct: 10  MEQESLFYQDL--QDPLASRLRPQSLEDYVGQKHLIGKGKVLWNLIEK--DQVTSMIFWG 65

Query: 62  PPGLGKTTLAQVVARELGVNF----RSTSG-----PVIAKAGDLAALLTNLEDRDVLFID 112
           PPG+GKTTLA+++A +    F      TSG      V+ +A D  A       R +LF+D
Sbjct: 66  PPGVGKTTLARIIAHKTQSRFIDFSAVTSGIREIKQVMKEASDARA----FGKRTILFVD 121

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN---LSR---FTLIAATTR--VG 164
           EIHR +   ++   P +E   + +++G      S +IN   LSR   F L    T   V 
Sbjct: 122 EIHRFNKAQQDAFLPYVEKGSI-ILIGATTENPSFEINSALLSRCKVFVLKGLETSDLVE 180

Query: 165 LLTNPLQDRFGI 176
           LL + L D  G 
Sbjct: 181 LLQHALADEKGF 192


>gi|253582254|ref|ZP_04859477.1| recombination factor protein RarA [Fusobacterium varium ATCC 27725]
 gi|251835793|gb|EES64331.1| recombination factor protein RarA [Fusobacterium varium ATCC 27725]
          Length = 409

 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 64/215 (29%), Positives = 98/215 (45%), Gaps = 41/215 (19%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP +L +F GQ +       L+  IE      +++ + +F GPPG GK++L +++++ L
Sbjct: 18  LRPTSLNDFIGQEKILGKGGVLRKLIEK-----QSISNSIFFGPPGCGKSSLGEIISKTL 72

Query: 79  GVNFRSTSGPVIAKAGDLAALL----TNLE---DRDVLFIDEIHRLSIIVEEILYPAMED 131
             NF  T    +A   DL  ++     NLE    + +LF+DEIHR + + ++ L    E 
Sbjct: 73  DSNFE-TLNATVASLNDLREIVEKAKKNLEFYGKKTILFLDEIHRFNKLQQDALLSYCES 131

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTR--VGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             L                    TLI ATT      L N L  R  I         E+++
Sbjct: 132 GIL--------------------TLIGATTENPYYSLNNALLSRVMI-FEFKPLSRENIR 170

Query: 190 TIVQRGAKLTGL--AVTDEAACEIAMRSRGTPRIA 222
            I++RGAK  GL   ++ E    I   S+G  RIA
Sbjct: 171 HILERGAKYIGLEEKISKEIIECILDISQGDSRIA 205


>gi|78042989|ref|YP_361014.1| recombination factor protein RarA [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77995104|gb|ABB14003.1| ATPase, AAA family [Carboxydothermus hydrogenoformans Z-2901]
          Length = 444

 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 70/136 (51%), Gaps = 10/136 (7%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD        V++E      +RPR+L+EF GQ       K+   A    ++ L  ++F G
Sbjct: 1   MDLWDTAKNKVNKEAPLAYRMRPRSLDEFIGQEHILGEGKLLRRAI--LSDRLGSLIFYG 58

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEI 114
           PPG GKTTLA+++A      F S +  V +  G++  ++   ++R+       VLFIDEI
Sbjct: 59  PPGTGKTTLARIIASTTKSGFESINA-VTSGVGEIREVIKKAKEREKYYGERTVLFIDEI 117

Query: 115 HRLSIIVEEILYPAME 130
           HR +   ++ L P +E
Sbjct: 118 HRFNKAQQDALLPEVE 133


>gi|223984816|ref|ZP_03634926.1| hypothetical protein HOLDEFILI_02224 [Holdemania filiformis DSM
           12042]
 gi|223963225|gb|EEF67627.1| hypothetical protein HOLDEFILI_02224 [Holdemania filiformis DSM
           12042]
          Length = 443

 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 85/170 (50%), Gaps = 16/170 (9%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           S LRP+TLEE  GQ       K+  +  +   + +  ++F GPPG+GKTTLA+++A    
Sbjct: 20  SRLRPKTLEEVAGQKHLLGEGKILRQLIEQ--DQVSSMIFWGPPGVGKTTLARIIAERTQ 77

Query: 80  VNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
            +F      TSG   I +  + A L   + ++ +LF+DEIHR +   ++   P +E   +
Sbjct: 78  SHFVDFSAVTSGIKEIKEVMNKAELNRQMGEKTILFVDEIHRFNKAQQDAFLPFVEKGSI 137

Query: 135 DLMVGEGPSARSVKIN---LSR---FTLIAATTR--VGLLTNPLQDRFGI 176
            +++G      S +IN   LSR   F L A  T     LL   LQD  G 
Sbjct: 138 -ILIGATTENPSFEINAALLSRCKVFVLQALATEDLTELLARALQDPRGF 186


>gi|167630476|ref|YP_001680975.1| ATPase, putative [Heliobacterium modesticaldum Ice1]
 gi|167593216|gb|ABZ84964.1| ATPase, putative [Heliobacterium modesticaldum Ice1]
          Length = 441

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 105/242 (43%), Gaps = 49/242 (20%)

Query: 2   MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD     S  V  ++  ++  +RPR+L+E +GQ        +F        + L   +  
Sbjct: 1   MDLFSYQSEAVKSKEGPLAFRMRPRSLDEVSGQSHLLKKGSLFRRMIDE--DKLQSFILY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDE 113
           GPPG GKTT+A+++A+     F + S  V A   D+  +    E+R        +LFIDE
Sbjct: 59  GPPGTGKTTIARLIAQTTESPFVTLSA-VTANTSDIKKVAKEAEERLSFNQKRTILFIDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD- 172
           IHR +   +++L P +ED  L                     LI ATT      NPL + 
Sbjct: 118 IHRFNKAQQDLLLPIVEDGTL--------------------ILIGATTE-----NPLYEL 152

Query: 173 RFGIPIRLNFYEIEDLK------------TIVQRGAKLTGLAVTDEAACEIAMRSRGTPR 220
              +  RL  Y ++ LK            T  +RG  L+G A+T+EA   I   ++G  R
Sbjct: 153 NAALLSRLRVYLLQPLKEEELLSLLKRALTDSERGLGLSGNALTEEALALIVQAAKGDAR 212

Query: 221 IA 222
            A
Sbjct: 213 AA 214


>gi|332799117|ref|YP_004460616.1| AAA ATPase central domain-containing protein [Tepidanaerobacter sp.
           Re1]
 gi|332696852|gb|AEE91309.1| AAA ATPase central domain protein [Tepidanaerobacter sp. Re1]
          Length = 445

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 105/215 (48%), Gaps = 37/215 (17%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+TL+EF GQ       KV  +  ++  +++  ++  GPPG+GKTTLA+++A +    
Sbjct: 26  MRPQTLDEFEGQEHLLGEGKVLRKLIES--DSITSMILWGPPGVGKTTLAKIIAEKTHAK 83

Query: 82  FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F + S  V++   ++  ++   E+      R +LFIDEIHR +   ++   P +E   + 
Sbjct: 84  FENFSA-VLSGIKEIREVMKQAEERRLYGQRTLLFIDEIHRFNKSQQDAFLPFVEKGDI- 141

Query: 136 LMVGEGPSARSVKIN---LSR---FTL--IAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           +++G      S ++N   LSR   FTL  +     + LL   ++D+              
Sbjct: 142 ILIGATTENPSFELNSALLSRSKVFTLNPLKPENIILLLKRAIKDK-------------- 187

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
                +RG     + ++DE   ++A+ S G  R+A
Sbjct: 188 -----ERGLGKMNVDISDETLEKLAVYSNGDARVA 217


>gi|330836757|ref|YP_004411398.1| Recombination protein MgsA [Spirochaeta coccoides DSM 17374]
 gi|329748660|gb|AEC02016.1| Recombination protein MgsA [Spirochaeta coccoides DSM 17374]
          Length = 763

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 65/117 (55%), Gaps = 10/117 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRTL+E+ GQ       ++   A +A  + L  V+F GPPG GKTTLA+V+A     +
Sbjct: 21  MRPRTLDEYIGQEHIVGPGRLLRRAIQA--DQLSSVIFYGPPGTGKTTLARVIANTTKSH 78

Query: 82  FRSTSGPVIAKAGDL-------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
           F  T   V++   +L          L++ + R +LF+DE+HR +   ++ L P +E+
Sbjct: 79  F-VTLNAVLSGVKELRYEIEQARERLSHWQQRTILFVDEVHRWNKSQQDALLPWVEN 134


>gi|39997165|ref|NP_953116.1| recombination factor protein RarA [Geobacter sulfurreducens PCA]
 gi|39984055|gb|AAR35443.1| ATPase, AAA family [Geobacter sulfurreducens PCA]
 gi|307634974|gb|ADI84901.2| stalled replication fork rescue ATPase [Geobacter sulfurreducens
           KN400]
          Length = 440

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 102/216 (47%), Gaps = 38/216 (17%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL+E+ GQ         L+  IE+     + L  ++F GPPG GKTTLA+V+A   
Sbjct: 22  MRPRTLDEYVGQEHLLGEGKLLRRLIES-----DTLTSLIFWGPPGSGKTTLARVIANAT 76

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLSIIVEEILYPAME- 130
             +F   S  +++   ++  ++   E+         +LF+DEIHR +   ++   P +E 
Sbjct: 77  KSHFIFFSA-ILSGIKEIREIVKEAEEEKKYRGRNTILFVDEIHRFNKSQQDAFLPYVER 135

Query: 131 -DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             F +     E PS   V   LSR  +        L+ NPL          N  +I  L+
Sbjct: 136 GTFTIIGATTENPSFEVVAPLLSRCKV--------LVLNPLSQE-------NVEQI--LR 178

Query: 190 TIV---QRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
           + +   +RG   +GLA  D+A   +A +S G  R+A
Sbjct: 179 SALADPERGLGASGLAADDDALAFMAEQSGGDGRVA 214


>gi|269956477|ref|YP_003326266.1| AAA ATPase central domain-containing protein [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269305158|gb|ACZ30708.1| AAA ATPase central domain protein [Xylanimonas cellulosilytica DSM
           15894]
          Length = 478

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 52/136 (38%), Positives = 71/136 (52%), Gaps = 15/136 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAK--ARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           +RP +LEE  GQ   + A S L+  +E A   AR  A   V+  GPPG GKTTLA +VA 
Sbjct: 30  MRPASLEEVAGQDHLLAAGSPLRRLVEPADGTARRAAPGSVILWGPPGTGKTTLAYLVAT 89

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAM 129
             G  F   S  V A   D+ A++ +   R        VLFIDE+HR S   ++ L P++
Sbjct: 90  VSGRRFVELSA-VTAGVKDVRAVVEDARRRLAGSGEETVLFIDEVHRFSKSQQDALLPSV 148

Query: 130 EDFQLDLMVG--EGPS 143
           E+  + L+    E PS
Sbjct: 149 ENRWVTLVAATTENPS 164


>gi|227530160|ref|ZP_03960209.1| recombination ATPase [Lactobacillus vaginalis ATCC 49540]
 gi|227349913|gb|EEJ40204.1| recombination ATPase [Lactobacillus vaginalis ATCC 49540]
          Length = 441

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 91/176 (51%), Gaps = 19/176 (10%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR LEEF GQ +   N KV  +  +   + +  ++  GPPG+GKTTLA+++A++   +
Sbjct: 20  IRPRNLEEFMGQQQLIGNGKVLRDLIEH--DQVSSLILWGPPGVGKTTLAEIIAQQTKSH 77

Query: 82  FRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F + S  V +   D+  ++   E      +R + FIDEIHR +   ++   P +E   + 
Sbjct: 78  FITFSA-VTSSIRDIRKIMEEAEKNREFGERTICFIDEIHRFNKAQQDAFLPFVERGSI- 135

Query: 136 LMVGEGPSARSVKIN---LSR---FTLIAATTR--VGLLTNPLQDRFGIP-IRLNF 182
           +++G      S +IN   LSR   F L + T    + +L   +    G P I++++
Sbjct: 136 ILIGATTENPSFEINSALLSRCKVFVLKSLTVNDIIAILKRAINHPDGFPGIKISY 191


>gi|222529053|ref|YP_002572935.1| recombination factor protein RarA [Caldicellulosiruptor bescii DSM
           6725]
 gi|222455900|gb|ACM60162.1| AAA ATPase central domain protein [Caldicellulosiruptor bescii DSM
           6725]
          Length = 441

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 103/222 (46%), Gaps = 36/222 (16%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ LEE  GQ    S  K      K   + L  ++  GPPG GKTT+A V+A   G  
Sbjct: 22  LRPKRLEEIVGQEHILSPGKPLYNLIKN--DRLTSIILYGPPGTGKTTIAHVIANATGKT 79

Query: 82  FRSTSGPVIAKAGDLAALL-------TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F++ +   IA   D+  ++       T    + +LFIDEIHR + + ++ L P++E+  +
Sbjct: 80  FKTINA-TIAGVNDIKKIIEEAKFEFTQTGKKTILFIDEIHRFNKLQQDALLPSVEEGVI 138

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
            +++G        ++N +   L++ +    L   PL++             ED+  I++R
Sbjct: 139 -ILIGATTENPFYEVNKA---LVSRSLVFELF--PLKE-------------EDILKIIER 179

Query: 195 GA--KLTGLA-----VTDEAACEIAMRSRGTPRIAGRLLRRV 229
               K  GL      + D+A   IA  S G  R+A  +L  V
Sbjct: 180 AISDKENGLGELNIQIEDDAKKLIAKLSGGDARVALNILEAV 221


>gi|312622691|ref|YP_004024304.1| AAA ATPase central domain-containing protein [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203158|gb|ADQ46485.1| AAA ATPase central domain protein [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 441

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 61/117 (52%), Gaps = 10/117 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ LEE  GQ    S  K      K   + L  ++  GPPG GKTT+A V+A   G  
Sbjct: 22  LRPKRLEEIVGQEHILSPGKPLYNLIKN--DRLTSIILYGPPGTGKTTIAHVIANATGKT 79

Query: 82  FRSTSGPVIAKAGDLAALL-------TNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
           F++ +   IA   D+  ++       T    + +LFIDEIHR + + ++ L P++E+
Sbjct: 80  FKTINA-TIAGVNDIKKIIEEAKFEFTQTGKKTILFIDEIHRFNKLQQDALLPSVEE 135


>gi|262196587|ref|YP_003267796.1| ATPase AAA [Haliangium ochraceum DSM 14365]
 gi|262079934|gb|ACY15903.1| AAA ATPase central domain protein [Haliangium ochraceum DSM 14365]
          Length = 463

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 63/208 (30%), Positives = 95/208 (45%), Gaps = 26/208 (12%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP++L+EF GQ       K+   A      AL  ++  GPPG GKTTLA ++A   G  
Sbjct: 21  MRPKSLQEFVGQNHLLGPRKLL--ARLGPGAALPSLILWGPPGTGKTTLAHILATRAGSR 78

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
             + S  V A   ++  L++   D       R VLFIDEIHR S   ++ L P +E   +
Sbjct: 79  LAAISA-VTAGVREMRQLVSEAGDRRDQFGSRTVLFIDEIHRFSKAQQDALLPHVEAGTV 137

Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            L+    E PS       LSR  ++    R+G L++   +  G   R    + E      
Sbjct: 138 TLIGATTENPSFHVNAALLSRCRVL----RLGALSD---EELGALARRALSDRE------ 184

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPR 220
            RG     ++V+DE   ++  +S G  R
Sbjct: 185 -RGLGRAAVSVSDEVLTDLVAQSGGDAR 211


>gi|297544999|ref|YP_003677301.1| AAA ATPase central domain-containing protein [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
 gi|296842774|gb|ADH61290.1| AAA ATPase central domain protein [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 443

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 120/260 (46%), Gaps = 38/260 (14%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRTL+EF GQ       K+  E  +   + +  ++  GPPG+GKTTLA ++A      
Sbjct: 23  MRPRTLDEFVGQEHLLGKGKLLRELIEK--DNITSMILWGPPGVGKTTLAMIIANMTNSK 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F + S  V++   ++  ++   E       R V+FIDEIHR +   ++   P +E   + 
Sbjct: 81  FVTFSA-VLSGIKEIKEIMAKAELDAMHGTRTVVFIDEIHRFNKAQQDAFLPHVEKGNI- 138

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           +++G      S ++N    + + + ++V  +  PL +             EDL  +++R 
Sbjct: 139 ILIGATTENPSFEVN----SALLSRSKV-FVMKPLTE-------------EDLLILLKRA 180

Query: 196 AK-------LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE--IA 246
            K       +  + +T+E    IA+ + G  R+A   L      A+V   + I  +  +A
Sbjct: 181 LKDEQNGLGMYKIGITEEQLKRIALFANGDARVALNTLEIAVMGAKVTEGRRIVTDDILA 240

Query: 247 DAALLR-LAIDKMGFDQLDL 265
           DA   + L  DK G +  +L
Sbjct: 241 DAMQKKTLLYDKQGEEHYNL 260


>gi|255019842|ref|ZP_05291918.1| ATPase, AAA family [Acidithiobacillus caldus ATCC 51756]
 gi|254970771|gb|EET28257.1| ATPase, AAA family [Acidithiobacillus caldus ATCC 51756]
          Length = 437

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 54/141 (38%), Positives = 73/141 (51%), Gaps = 11/141 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR+L EF GQ            AA  R ++L  ++F GPPG+GKTTLA ++A E G  
Sbjct: 13  MRPRSLAEFIGQERLLGPAGPI--AAMLRQKSLHSLVFWGPPGVGKTTLAHLLAAEQGAE 70

Query: 82  FRSTSGPVIAKAGDL---AALLTNLEDR---DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
             + S  V +   +L   AA+ T    R    VLFIDEIHR +   ++ L P +E+  L 
Sbjct: 71  VLTLSA-VDSGVRELRAAAAVATERRGRGESTVLFIDEIHRFNKTQQDALLPHLEEGTLT 129

Query: 136 LM--VGEGPSARSVKINLSRF 154
           L+    E PS   V   LSR 
Sbjct: 130 LIGATTENPSFALVGALLSRI 150


>gi|148240504|ref|YP_001225891.1| fused recombination factor protein RarA/unknown domain-containing
           protein [Synechococcus sp. WH 7803]
 gi|147849043|emb|CAK24594.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [Synechococcus sp. WH 7803]
          Length = 737

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 48/145 (33%), Positives = 75/145 (51%), Gaps = 12/145 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPR L+EF GQ    +  ++   A  A  + + +++  GPPG+GKTTLA+++A     +
Sbjct: 28  LRPRNLDEFVGQGAILAEGRLLRRAIAA--DRVGNLILHGPPGVGKTTLARIIANHTRAH 85

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F S +  V+A   DL A ++           R +LFIDE+HR +   ++ L P +E+  L
Sbjct: 86  FSSLNA-VLAGVKDLRAEVSEAGQRLERHGLRTILFIDEVHRFNSAQQDALLPWVENGTL 144

Query: 135 DLM--VGEGPSARSVKINLSRFTLI 157
            L+    E P     K  +SR  L 
Sbjct: 145 TLIGATTENPYFEVNKALVSRSRLF 169


>gi|78222159|ref|YP_383906.1| recombination factor protein RarA [Geobacter metallireducens GS-15]
 gi|78193414|gb|ABB31181.1| Recombination protein MgsA [Geobacter metallireducens GS-15]
          Length = 441

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 102/220 (46%), Gaps = 46/220 (20%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL+++ GQ         L+  IE+     + L  ++F GPPG GKTTLA+++A   
Sbjct: 23  MRPRTLDDYVGQEHLLGEGKLLRRLIES-----DTLSSLIFWGPPGSGKTTLARIIANAT 77

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131
             +F   S  +++   ++  ++   E+         +LF+DEIHR +   ++   P +E 
Sbjct: 78  KSHFIFFSA-ILSGVKEIREIVKEAENERKYRGSNTILFVDEIHRFNKSQQDAFLPYVEK 136

Query: 132 --FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             F +     E PS   +   LSR  +        L+ N L D             E++ 
Sbjct: 137 GVFTIIGATTENPSFEVIAPLLSRCKV--------LVLNSLTD-------------EEVT 175

Query: 190 TIV-------QRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
           TI+       +RG     LAV+DEA   +A +++G  RIA
Sbjct: 176 TILRRALVDPERGLGNRSLAVSDEALAFMAEQAQGDARIA 215


>gi|295695736|ref|YP_003588974.1| AAA ATPase central domain protein [Bacillus tusciae DSM 2912]
 gi|295411338|gb|ADG05830.1| AAA ATPase central domain protein [Bacillus tusciae DSM 2912]
          Length = 472

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 54/147 (36%), Positives = 75/147 (51%), Gaps = 14/147 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP TL+E  GQ E      +   A +A  + L  V+F GPPG+GKTTLA+++A      
Sbjct: 22  MRPATLDELMGQEEIVGPGTLLRRAIEA--DRLTSVIFYGPPGVGKTTLARLIAGYTRSV 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F + S  V A   DL  ++ +  DR         LFIDEIHR +   ++ L P MED  L
Sbjct: 80  FVTLSA-VTAGIADLRRVVDDARDRLGMYGQKTTLFIDEIHRFNKAQQDALLPHMED-GL 137

Query: 135 DLMVG---EGPSARSVKINLSRFTLIA 158
            +++G   E P     K  LSR  + A
Sbjct: 138 VILIGATTENPYFEVNKALLSRSLVFA 164


>gi|270308478|ref|YP_003330536.1| ATPase, AAA family [Dehalococcoides sp. VS]
 gi|270154370|gb|ACZ62208.1| ATPase, AAA family [Dehalococcoides sp. VS]
          Length = 457

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 84/162 (51%), Gaps = 22/162 (13%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP  L EF GQ   +     L++ IE  K     +  ++F GPPG GKTTLA ++AR L
Sbjct: 27  MRPEGLSEFVGQDHLIGEGRALRLAIEGDK-----IPSLIFWGPPGSGKTTLANIIARRL 81

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131
             +F + S  V A   DL  ++    +       R +LFIDEIHR +   ++ + P +ED
Sbjct: 82  DAHFSALSA-VSAGVADLRRVVEEARERLKFERRRTILFIDEIHRFNKSQQDAILPYVED 140

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
             + +++G      S ++N    + + +  +V +L NPL ++
Sbjct: 141 GTV-VLIGATTENPSFEVN----SALLSRAQVYVL-NPLSEK 176


>gi|190891389|ref|YP_001977931.1| ATPase [Rhizobium etli CIAT 652]
 gi|190696668|gb|ACE90753.1| putative ATPase protein [Rhizobium etli CIAT 652]
          Length = 438

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 48/138 (34%), Positives = 73/138 (52%), Gaps = 16/138 (11%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL E TGQ         LK  IE+      +L  ++F GPPG GKTT+A++++ E 
Sbjct: 24  LRPKTLAEVTGQEHLTGEDGVLKRMIESG-----SLGSMIFWGPPGTGKTTVARLLSGEA 78

Query: 79  GVNFRSTSGPVIAKAGDL-----AALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMEDF 132
           G+ F   S  + +   DL      A L  ++ R  +LF+DEIHR +   ++   P MED 
Sbjct: 79  GLAFEQISA-IFSGVADLKKVFETARLRRMDGRQTLLFVDEIHRFNRAQQDSFLPVMEDG 137

Query: 133 QLDLMVGEGPSARSVKIN 150
            + ++VG      S ++N
Sbjct: 138 TV-ILVGATTENPSFELN 154


>gi|313891986|ref|ZP_07825587.1| ATPase, AAA family [Dialister microaerophilus UPII 345-E]
 gi|313119629|gb|EFR42820.1| ATPase, AAA family [Dialister microaerophilus UPII 345-E]
          Length = 435

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 77/277 (27%), Positives = 127/277 (45%), Gaps = 49/277 (17%)

Query: 11  NVSQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           ++ Q++  I L   +RP  LE+  GQ  +  + + F+     + + +  +L  GPPG GK
Sbjct: 6   DIKQDNTYIPLADRMRPDKLEDIVGQKNSIGS-QSFLYKMICK-DLVPSLLLFGPPGCGK 63

Query: 68  TTLAQVVARELGVN---FRSTSGPVIAKAGDLAAL-----LTNLEDRDVLFIDEIHRLSI 119
           TT+A+V+A     N   F +T   +  K   L A+     L     R +LFIDEIHR + 
Sbjct: 64  TTIAKVIASTTKSNFIKFNATENGI--KEIRLIAIKAEENLKFYNKRTILFIDEIHRFNK 121

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
             +++L P  ED  L L+   G +  +   +L+R    A  +R+ L            +R
Sbjct: 122 SQQDVLLPYTEDGTLTLI---GATTENPYFSLNR----ALLSRIRL------------VR 162

Query: 180 LNFYEIEDLKTIVQ-------RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           L    I+D+ +I++       +G         +++  EIA+ + G  RIA  LL +V   
Sbjct: 163 LTELSIDDIISILKNALTNKDKGLGKYNYEYNEKSLKEIAVFANGDTRIALNLLEQVTSL 222

Query: 233 AEVAHAKTIT----REIADAALLRLAIDKMGFDQLDL 265
             VA   TIT    +E+A   +     DK G +  D+
Sbjct: 223 --VAPNGTITENLVKEVAGEQI--FLYDKKGDNHYDV 255


>gi|307245272|ref|ZP_07527363.1| Replication-associated recombination protein A [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307254221|ref|ZP_07536065.1| Replication-associated recombination protein A [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307258684|ref|ZP_07540419.1| Replication-associated recombination protein A [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306853916|gb|EFM86130.1| Replication-associated recombination protein A [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306862820|gb|EFM94770.1| Replication-associated recombination protein A [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306867341|gb|EFM99194.1| Replication-associated recombination protein A [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
          Length = 428

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 82/168 (48%), Gaps = 22/168 (13%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL E+ GQ         L+  IEA  + +     ++F GPPG GKTTLA+++A   
Sbjct: 1   MRPRTLAEYIGQAHLIGEGKPLRRAIEAGHSHS-----MIFWGPPGTGKTTLAEIIAHHF 55

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
                     TSG   I +A + A L      R +LF+DE+HR +   ++   P +ED  
Sbjct: 56  DAEVERLSAVTSGVKEIREAIERAKLNRQTGRRTLLFVDEVHRFNKSQQDAFLPHIEDGT 115

Query: 134 LDLMVGEGPSARSVKIN---LSRFTL-----IAATTRVGLLTNPLQDR 173
           + + +G      S ++N   LSR  +     + A   V +LTN L D+
Sbjct: 116 I-IFIGATTENPSFELNNALLSRAKIYILKPLQAVEIVQVLTNALYDK 162


>gi|257456871|ref|ZP_05622052.1| recombination factor protein RarA [Treponema vincentii ATCC 35580]
 gi|257445580|gb|EEV20642.1| recombination factor protein RarA [Treponema vincentii ATCC 35580]
          Length = 751

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 63/117 (53%), Gaps = 10/117 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR+L+E+ GQ       ++   A +A  + L  V+F GPPG GKTTLAQV+A     N
Sbjct: 21  MRPRSLDEYIGQEHIVGKGRLLRRAIQA--DRLSSVIFFGPPGTGKTTLAQVIANHTKSN 78

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLSIIVEEILYPAMED 131
           F S +  V+A    +   + + E          +LF+DE+HR +   ++ L P +E+
Sbjct: 79  FLSLNA-VLAGVQQIRDAIASAEQYKKLYGKPTILFVDEVHRWNRAQQDALLPWVEN 134


>gi|326773290|ref|ZP_08232573.1| ATPase, AAA family [Actinomyces viscosus C505]
 gi|326636520|gb|EGE37423.1| ATPase, AAA family [Actinomyces viscosus C505]
          Length = 467

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/148 (35%), Positives = 74/148 (50%), Gaps = 27/148 (18%)

Query: 22  LRPRTLEEFTGQVE---ACSNLKVFIE---------------AAKARAEALDHVLFVGPP 63
           +RPRTL+E  GQ       S L+  +E               AA+  + +L  V+  GPP
Sbjct: 26  MRPRTLDELQGQAHLLTPGSPLRRLVEPAEAGRGSHAGERGAAARPSSSSLSSVILWGPP 85

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRL 117
           G GKTTLA +VAR  G  F   S  V A   D+ A++T+   R       VLFIDE+HR 
Sbjct: 86  GTGKTTLAYLVARGSGRRFVELSA-VTAGVKDVRAVVTDARRRLAAGEETVLFIDEVHRF 144

Query: 118 SIIVEEILYPAMEDFQLDLMVG--EGPS 143
           S   ++ L P++E+  + L+    E PS
Sbjct: 145 SRSQQDALLPSVENRWVTLIAATTENPS 172


>gi|226355347|ref|YP_002785087.1| recombination factor protein RarA [Deinococcus deserti VCD115]
 gi|226317337|gb|ACO45333.1| putative DNA-dependent ATPase [Deinococcus deserti VCD115]
          Length = 451

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 84/170 (49%), Gaps = 18/170 (10%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPRT+ E  GQ       +      ++    L  ++  GPPG+GKTTLA++VA E+G +
Sbjct: 31  LRPRTVAEVVGQTHLLGPGRPLTRVLQS--GRLGSLILWGPPGVGKTTLARLVAGEVGAH 88

Query: 82  FRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F + S  V A   D+   +T  E       R +LF+DEIHR +   ++ L P +E   L 
Sbjct: 89  FIALSA-VSAGVKDVREAVTEAERLRARGTRTILFLDEIHRFNKAQQDALLPHVESGLLT 147

Query: 136 LMVGEGPSARSVKIN-----LSRFTLIAATTR---VGLLTNPLQDRFGIP 177
           L +G      S ++N      +R  ++ A T+    GLL   L D  G+P
Sbjct: 148 L-IGATTENPSFEVNPALRSRARTLVLEALTQEDIKGLLERALSDERGLP 196


>gi|254779113|ref|YP_003057218.1| recombination factor protein RarA [Helicobacter pylori B38]
 gi|254001024|emb|CAX28968.1| Putative ATPase, AAA+ superfamily [Helicobacter pylori B38]
          Length = 391

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/117 (36%), Positives = 63/117 (53%), Gaps = 12/117 (10%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +LL P++LE+F GQ           +A +++     H  F GPPG+GKT+LAQ++A  L 
Sbjct: 5   ALLNPKSLEDFLGQEHLIGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIACMLE 62

Query: 80  ---VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAME 130
              + F +T      K  DL   L N ++   + V+FIDE HRL+   +E L P ME
Sbjct: 63  RPILLFNATD----FKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115


>gi|241952086|ref|XP_002418765.1| AAA family ATPase, putative [Candida dubliniensis CD36]
 gi|223642104|emb|CAX44070.1| AAA family ATPase, putative [Candida dubliniensis CD36]
          Length = 490

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 75/136 (55%), Gaps = 15/136 (11%)

Query: 22  LRPRTLEEFTGQVEACS----NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +RP T E++ GQ    +     ++ FI+        L  ++  GPPG+GKTTLA V++ E
Sbjct: 26  IRPTTFEQYVGQDHLINPQNGAIRNFIKLG-----YLPSMILSGPPGIGKTTLASVISYE 80

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
            G+ F   S   +    DL  ++     + VLFIDE+HRL+ I ++ L P +E+ ++ ++
Sbjct: 81  CGLPFLELSATTMT-TSDLKIIMETHNTQLVLFIDELHRLTKIQQDWLLPYIENGKI-IL 138

Query: 138 VGEGPSARSVKINLSR 153
           +G    A +V+ N +R
Sbjct: 139 IG----ATTVQPNSTR 150


>gi|187922127|ref|YP_001893769.1| recombination factor protein RarA [Burkholderia phytofirmans PsJN]
 gi|187713321|gb|ACD14545.1| AAA ATPase central domain protein [Burkholderia phytofirmans PsJN]
          Length = 439

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/129 (37%), Positives = 66/129 (51%), Gaps = 16/129 (12%)

Query: 21  LLRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           LLRPRTL+EF GQ   + A   L++  EA K     L   +  GPPG+GKTTL ++ A  
Sbjct: 18  LLRPRTLDEFVGQRHLLGAGKPLRLAFEAGK-----LHSFILWGPPGVGKTTLGRLAASA 72

Query: 78  LGVNFRSTSGPVIAKAGDL-------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
               F + S  V+A   D+        A L N     VLF+DEIHR +   ++ L P +E
Sbjct: 73  TDSRFIAISA-VLAGVKDIRQAIDEAQAELDNHGRSTVLFVDEIHRFNKAQQDALLPHVE 131

Query: 131 DFQLDLMVG 139
              L L+ G
Sbjct: 132 SGLLTLVGG 140


>gi|257459680|ref|ZP_05624789.1| ATPase, AAA family [Campylobacter gracilis RM3268]
 gi|257443105|gb|EEV18239.1| ATPase, AAA family [Campylobacter gracilis RM3268]
          Length = 395

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 64/114 (56%), Gaps = 9/114 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
            RP++L++  GQ +  +  K F+ A      ++ H +F G  G GKTT+A+V+A EL  +
Sbjct: 7   FRPKSLDQIAGQGKIVAVFKKFVAAG-----SIPHSIFFGAAGSGKTTMARVIASELNYD 61

Query: 82  FRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDF 132
           F       + K  D+  +L++      + ++FIDEIHRLS   +E+L   ME++
Sbjct: 62  FYELDATSL-KVEDIRKILSSHAGSLIKPLIFIDEIHRLSKTQQEVLLIPMENY 114


>gi|159899639|ref|YP_001545886.1| recombination factor protein RarA [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159892678|gb|ABX05758.1| AAA ATPase central domain protein [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 459

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 84/165 (50%), Gaps = 20/165 (12%)

Query: 7   LLSRNVSQ-EDADISL-LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVG 61
           L S   SQ  DA ++  +RPRTL E+ GQ +       L+  IE    R + +  +L+ G
Sbjct: 3   LFSYQASQSNDAPLAARMRPRTLAEYEGQTKIVGEGRLLRRLIE----RDQLISLILW-G 57

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEI 114
           PPG GKTTLA+++A     +F   S  V A   +L  ++    +       R VLFIDEI
Sbjct: 58  PPGTGKTTLARIIAGASSAHFEPLSA-VSAGVAELRKVVKEANERRGMYGKRTVLFIDEI 116

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLI 157
           HR +   ++ + PA+ED  + L+    E PS    +  LSR  +I
Sbjct: 117 HRWNKAQQDAVLPAVEDGTVTLIGATTENPSFEINRALLSRCRVI 161


>gi|288918205|ref|ZP_06412560.1| AAA ATPase central domain protein [Frankia sp. EUN1f]
 gi|288350375|gb|EFC84597.1| AAA ATPase central domain protein [Frankia sp. EUN1f]
          Length = 476

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/126 (35%), Positives = 65/126 (51%), Gaps = 16/126 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPR+L+E  GQ   +   S L+  +E     +     V+  GPPG GKTTLA +V+R  
Sbjct: 22  LRPRSLDEVVGQRHLLAEGSPLRRLVEGGGTTS-----VVLWGPPGTGKTTLAHIVSRAT 76

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131
              FR  S  V A   D+ A++    D       R VLFIDE+HR +   ++ L P++E 
Sbjct: 77  RRRFRELSA-VTAGVKDVRAVIDEARDTLFMSGVRTVLFIDEVHRFTRTQQDALLPSVEK 135

Query: 132 FQLDLM 137
             + L+
Sbjct: 136 GWVTLV 141


>gi|330446443|ref|ZP_08310095.1| recombination factor [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328490634|dbj|GAA04592.1| recombination factor [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 446

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 97/221 (43%), Gaps = 25/221 (11%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRT+EE+ GQ       K    A +A    L  ++  GPPG GKTTLA+V A      
Sbjct: 19  MRPRTVEEYIGQQHILGEGKPLRRALEA--GHLHSMILWGPPGTGKTTLAEVAAHYANAE 76

Query: 82  FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
               S  V +   D+ A +    D      R +LF+DE+HR +   ++   P +ED  + 
Sbjct: 77  VERVSA-VTSGIKDIRAAIGKARDNKMAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVT 135

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
            +    E PS       LSR        RV  L + L+D   + +      +E   T  +
Sbjct: 136 FIGATTENPSFELNNALLSR-------ARVYKLKS-LEDSEILQV------LEQALTDKE 181

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
           RG   T L   D+   ++A   RG  R++   L ++ D AE
Sbjct: 182 RGVTETNLHFVDDIKEKLAEFVRGDARMSLNYLEQLIDMAE 222


>gi|160885966|ref|ZP_02066969.1| hypothetical protein BACOVA_03971 [Bacteroides ovatus ATCC 8483]
 gi|156108779|gb|EDO10524.1| hypothetical protein BACOVA_03971 [Bacteroides ovatus ATCC 8483]
          Length = 423

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 76/264 (28%), Positives = 120/264 (45%), Gaps = 50/264 (18%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL+E+ GQ   V   + L+  I+A +     +   +  GPPG+GKTTLAQ++A +L
Sbjct: 8   LRPKTLDEYIGQKHLVGPGAILRKMIDAGR-----ISSFILWGPPGVGKTTLAQIIANKL 62

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V +   D+  ++          +   +LFIDEIHR S   ++ L  A+E+
Sbjct: 63  ETPFYTLSA-VTSGVKDVREVIDRAKSNRFFSQSSPILFIDEIHRFSKSQQDSLLGAVEN 121

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             + L+    E PS   ++  LSR  L                       L   E EDL+
Sbjct: 122 GTVTLIGATTENPSFEVIRPLLSRCQLYV---------------------LKSLEKEDLQ 160

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE-VAHAKT-----ITR 243
            ++QR   +T  A+  E   E+   +    R +G   R++ +  E V  ++T     IT 
Sbjct: 161 ELLQRA--ITTDAILKERKIELK-ETTAMLRFSGGDARKLLNILELVVQSETEETVVITD 217

Query: 244 EIADAALLR--LAIDKMGFDQLDL 265
           E+    L +  LA DK G    D+
Sbjct: 218 EMVTERLQQNPLAYDKDGEMHYDI 241


>gi|165975898|ref|YP_001651491.1| recombination factor protein RarA [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|165875999|gb|ABY69047.1| putative ATPase [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
          Length = 428

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 82/168 (48%), Gaps = 22/168 (13%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL E+ GQ         L+  IEA  + +     ++F GPPG+GKTTLA+++A   
Sbjct: 1   MRPRTLAEYIGQAHLIGEGKPLRRAIEAGHSHS-----MIFWGPPGIGKTTLAEIIAHHF 55

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
                     TSG   I +A + A L      R +LF+DE+HR +   ++   P +ED  
Sbjct: 56  DAEVERLSAVTSGVKEIREAIERAKLNRQTGRRTLLFVDEVHRFNKSQQDAFLPHIEDGT 115

Query: 134 LDLMVGEGPSARSVKIN---LSRFTL-----IAATTRVGLLTNPLQDR 173
           + + +G      S ++N   LSR  +     + A     +LTN L D+
Sbjct: 116 I-IFIGATTENPSFELNNALLSRAKIYILKPLQAVEIAQVLTNALYDK 162


>gi|256832588|ref|YP_003161315.1| AAA ATPase central domain-containing protein [Jonesia denitrificans
           DSM 20603]
 gi|256686119|gb|ACV09012.1| AAA ATPase central domain protein [Jonesia denitrificans DSM 20603]
          Length = 464

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/135 (36%), Positives = 72/135 (53%), Gaps = 14/135 (10%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEAL-DHVLFVGPPGLGKTTLAQVVARE 77
           +RPRT+EE TGQ   ++  S L+  ++ +     A+   V+  GPPG GKTTLA ++A  
Sbjct: 27  MRPRTVEEVTGQTHLLQPGSPLRRLLDTSGEYQRAMPGSVMLWGPPGTGKTTLAYLIALN 86

Query: 78  LGVNFRSTSGPVIAKAGDLAAL-------LTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
            G  F   S  V A   D+ A+       LT+     VLFIDE+HR S   ++ L P++E
Sbjct: 87  SGRFFVELSA-VTAGVKDVRAVIDDARRRLTSGGQETVLFIDEVHRFSKSQQDALLPSVE 145

Query: 131 DFQLDLMVG--EGPS 143
           +  + L+    E PS
Sbjct: 146 NRWITLVAATTENPS 160


>gi|188586400|ref|YP_001917945.1| Recombination protein MgsA [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179351087|gb|ACB85357.1| Recombination protein MgsA [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 447

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 114/252 (45%), Gaps = 42/252 (16%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR+L++F GQ +     K+   A +A  + L  ++  GPPG GKTT+A+++A      
Sbjct: 24  MRPRSLDDFVGQEQILGKGKLLRRAIEA--DRLTSIVLYGPPGSGKTTIAKIIAENTEKY 81

Query: 82  FRSTSGPVIAKAGDLAALL-TNLEDRD------VLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F   +  V +   DL  ++  + E+R       ++FIDEIHR +   ++ L P +ED   
Sbjct: 82  FYQLNA-VTSGVKDLREVVEKSKENRSYYSKGTIMFIDEIHRFNKSQQDALLPYVED--- 137

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLT--NPLQDRFGIPIRLNFYEIEDLKTIV 192
                               TLI ATT     T  NPL  R  I  +L    I++++T++
Sbjct: 138 -----------------GTITLIGATTENPYFTVNNPLLSRSRI-FKLEQLGIQEIETLL 179

Query: 193 QR-------GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR--VRDFAEVAHAKTITR 243
           +R       G     + +  +A   +   S G  RIA   L    +         + IT+
Sbjct: 180 RRSLQDEEKGLGNYNVEINQDALQHLTDCSNGDIRIALNALELAVLTTVPNENGTRIITK 239

Query: 244 EIADAALLRLAI 255
           E+A+ ++ + A+
Sbjct: 240 EVAEESIQKKAV 251


>gi|86357338|ref|YP_469230.1| recombination factor protein RarA [Rhizobium etli CFN 42]
 gi|86281440|gb|ABC90503.1| putative ATPase associated with chromosome architecture/replication
           protein [Rhizobium etli CFN 42]
          Length = 438

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/138 (34%), Positives = 74/138 (53%), Gaps = 16/138 (11%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL + TGQ         LK  IE+      +L  ++F GPPG GKTT+A++++ E 
Sbjct: 24  LRPKTLADVTGQEHLTGEDGVLKRMIESG-----SLGSMIFWGPPGTGKTTVARLLSGEA 78

Query: 79  GVNFRSTSGPVIAKAGDL-----AALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMEDF 132
           G+ F   S  + +   DL     AA +  ++ R  +LF+DEIHR +   ++   P MED 
Sbjct: 79  GLAFEQISA-IFSGVADLKKVFEAARMRRMDGRQTLLFVDEIHRFNRAQQDSFLPVMEDG 137

Query: 133 QLDLMVGEGPSARSVKIN 150
            + ++VG      S ++N
Sbjct: 138 TV-ILVGATTENPSFELN 154


>gi|220908139|ref|YP_002483450.1| recombination factor protein RarA/unknown domain fusion protein
           [Cyanothece sp. PCC 7425]
 gi|219864750|gb|ACL45089.1| AAA ATPase central domain protein [Cyanothece sp. PCC 7425]
          Length = 731

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 71/139 (51%), Gaps = 9/139 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR+L+EF GQ       ++   A +A  + L  ++F GPPG GKTTLA+++A      
Sbjct: 15  MRPRSLDEFIGQDHIIGEGRLLRRAIQA--DQLSSLIFYGPPGTGKTTLARMIANTTQAY 72

Query: 82  FRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           F + +  +     I  A + A     L  R +LF+DE+HR +   ++ L P +E+  L L
Sbjct: 73  FIAINAVLAGVKEIRAAVETAQTHQQLRQRTILFVDEVHRFNKAQQDALLPWVENGTLIL 132

Query: 137 M--VGEGPSARSVKINLSR 153
           +    E P     K  +SR
Sbjct: 133 IGATTENPYFEVNKALVSR 151


>gi|223937388|ref|ZP_03629293.1| AAA ATPase central domain protein [bacterium Ellin514]
 gi|223893939|gb|EEF60395.1| AAA ATPase central domain protein [bacterium Ellin514]
          Length = 457

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 63/116 (54%), Gaps = 10/116 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR L E+ GQ       ++   A +A  + +  ++F GPPG GKT+LAQ++A +    
Sbjct: 35  MRPRNLSEYIGQSHILGPGQLLRRAIEA--DRIQSLIFYGPPGTGKTSLAQIIALQTSSK 92

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAME 130
           F   SG V +   D+  +L+   +R        +LF+DEIHR +   +++L P +E
Sbjct: 93  FERLSG-VESNVADMRRVLSAASNRLENTGQPTILFVDEIHRFNKSQQDVLLPDVE 147


>gi|282878511|ref|ZP_06287292.1| recombination factor protein RarA [Prevotella buccalis ATCC 35310]
 gi|281299302|gb|EFA91690.1| recombination factor protein RarA [Prevotella buccalis ATCC 35310]
          Length = 432

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/147 (34%), Positives = 76/147 (51%), Gaps = 18/147 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL+E+ GQ   V   + L+  IEA +     +   +  GPPG+GKTTLAQ++A  L
Sbjct: 9   MRPRTLDEYVGQQHLVGEGAVLRKMIEAGR-----ISSFILWGPPGVGKTTLAQIIANML 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V +   D+  ++   ++         +LFIDEIHR S   ++ L  A+E 
Sbjct: 64  QTPFYTLSA-VTSGVKDVREVIERAKNSSFFNSASPILFIDEIHRFSKSQQDSLLGAVEK 122

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156
             + L+    E PS   ++  LSR  L
Sbjct: 123 GVVTLIGATTENPSFEVIRPLLSRCQL 149


>gi|289808090|ref|ZP_06538719.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 65

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 44/65 (67%)

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +A  AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED++EPY+
Sbjct: 1   LAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYL 60

Query: 305 IQQGF 309
           IQQGF
Sbjct: 61  IQQGF 65


>gi|218885443|ref|YP_002434764.1| recombination factor protein RarA [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218756397|gb|ACL07296.1| AAA ATPase central domain protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 408

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/138 (34%), Positives = 69/138 (50%), Gaps = 11/138 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP TL+ F GQ      +     AA  RAE L  +L  GPPG GK+TLA ++A   G  
Sbjct: 11  IRPSTLDGFVGQTHLTPRI-----AALLRAERLPSLLLFGPPGCGKSTLALLLANAHGTK 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VG 139
               S P   +AG L  L  +L   DVL +DE+HR S   ++   P +E  ++ ++    
Sbjct: 66  VLRLSAP---EAG-LQQLRRSLSGVDVLVLDELHRFSKAQQDFFLPILESGEITMIATTT 121

Query: 140 EGPSARSVKINLSRFTLI 157
           E PS    +  LSR  ++
Sbjct: 122 ENPSFSVTRQLLSRLHVM 139


>gi|289432988|ref|YP_003462861.1| ATPase AAA [Dehalococcoides sp. GT]
 gi|288946708|gb|ADC74405.1| AAA ATPase central domain protein [Dehalococcoides sp. GT]
          Length = 452

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 72/139 (51%), Gaps = 17/139 (12%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP TL EF GQ         L++ +E+ K     +  ++F GPPG GKTTLA ++A  L
Sbjct: 22  MRPETLAEFVGQSHLIGEGRALRLSLESDK-----IPSLIFWGPPGSGKTTLANIIAHSL 76

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131
             +F + S  V A   DL  ++    +       R +LFIDEIHR +   ++ + P +ED
Sbjct: 77  DAHFSALSA-VSAGVADLRRVVEEARERLKLYHRRTILFIDEIHRFNKSQQDAILPYVED 135

Query: 132 FQLDLMVGEGPSARSVKIN 150
             + +++G      S ++N
Sbjct: 136 GTV-VLIGATTENPSFEVN 153


>gi|332975396|gb|EGK12290.1| AAA family ATPase [Desmospora sp. 8437]
          Length = 410

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 74/146 (50%), Gaps = 14/146 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRTL+E  GQ       K+   + +A  + L  +L  GPPG GKTTLA+V+A      
Sbjct: 22  MRPRTLDEIVGQSHILGRGKLLRRSIEA--DQLSSILLYGPPGTGKTTLAKVIANTTQAR 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F   +  VIA   ++  +    ++       R +LFIDEIHR +   ++ L P +ED  +
Sbjct: 80  FEQLNA-VIAGVAEIRRITQEAKEQLGMYDLRTLLFIDEIHRFNKSQQDALLPFVEDGTI 138

Query: 135 DLMVGEGPSARSVKIN---LSRFTLI 157
            +++G      S ++N   LSR  L 
Sbjct: 139 -ILIGATTENPSFEVNSALLSRSRLF 163


>gi|227824827|ref|ZP_03989659.1| recombination factor protein rarA [Acidaminococcus sp. D21]
 gi|226905326|gb|EEH91244.1| recombination factor protein rarA [Acidaminococcus sp. D21]
          Length = 440

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 85/169 (50%), Gaps = 18/169 (10%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+TL+EF GQ       KV     +   + +  ++F GPPG+GKTTLA+++A     +
Sbjct: 19  LRPKTLDEFQGQQHLLGKGKVLRNLIER--DQISSMIFWGPPGVGKTTLAKIIAHTTKAS 76

Query: 82  FRSTSGPVIAKAGDLAALL------TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F + S  V +   ++ A++      T    R ++FIDEIHR +   ++   P +E   + 
Sbjct: 77  FITFSA-VTSGIKEIRAVMQRADEQTRFGQRTIVFIDEIHRFNRAQQDAFLPFVEKGSI- 134

Query: 136 LMVGEGPSARSVKIN---LSR---FTLIAATTR--VGLLTNPLQDRFGI 176
           +++G      S ++N   LSR   F L   TT   + LL   L D  G+
Sbjct: 135 ILIGATTENPSFEVNGALLSRCKVFVLKELTTEDIMALLKRALTDSRGL 183


>gi|147669758|ref|YP_001214576.1| recombination factor protein RarA [Dehalococcoides sp. BAV1]
 gi|146270706|gb|ABQ17698.1| AAA ATPase, central domain protein [Dehalococcoides sp. BAV1]
          Length = 457

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 72/139 (51%), Gaps = 17/139 (12%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP TL EF GQ         L++ +E+ K     +  ++F GPPG GKTTLA ++A  L
Sbjct: 27  MRPETLAEFVGQSHLIGEGRALRLSLESDK-----IPSLIFWGPPGSGKTTLANIIAHSL 81

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131
             +F + S  V A   DL  ++    +       R +LFIDEIHR +   ++ + P +ED
Sbjct: 82  DAHFSALSA-VSAGVADLRRVVEEARERLKLYHRRTILFIDEIHRFNKSQQDAILPYVED 140

Query: 132 FQLDLMVGEGPSARSVKIN 150
             + +++G      S ++N
Sbjct: 141 GTV-VLIGATTENPSFEVN 158


>gi|254489705|ref|ZP_05102901.1| ATPase, AAA family protein [Methylophaga thiooxidans DMS010]
 gi|224465114|gb|EEF81367.1| ATPase, AAA family protein [Methylophaga thiooxydans DMS010]
          Length = 441

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 99/230 (43%), Gaps = 42/230 (18%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH-VLFVGPPGLGKTTLAQVVARELGV 80
           +RP+TL+++ GQ       K   +A    A    H ++F GPPG GKTTLA+++A     
Sbjct: 19  MRPKTLDQYIGQAHLLGASKPLRQAI---ASGHPHSMIFWGPPGTGKTTLAKLIAGYCDA 75

Query: 81  NFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
            F + S  V+A   ++ A +   +        R +LF+DE+HR +   ++   P +ED  
Sbjct: 76  EFMTISA-VLAGVKEVRAAVARAQQLQQEQGRRTMLFVDEVHRFNKSQQDAFLPYVED-- 132

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGL--LTNPLQDRFGIPIRLNFYEIEDLKTI 191
                               FT I ATT      L N L  R  + + L   E  DL+ I
Sbjct: 133 ------------------GTFTFIGATTENPSFELNNALLSRARVYV-LKSLETTDLRQI 173

Query: 192 VQR-------GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
           + R       G    G+A+ DE   ++A  + G  R    LL    D A+
Sbjct: 174 IDRAMSNAELGLAERGIAIADELRDQLAQTADGDGRRVLNLLEIAIDLAD 223


>gi|116073846|ref|ZP_01471108.1| putative ATPase, AAA family protein [Synechococcus sp. RS9916]
 gi|116069151|gb|EAU74903.1| putative ATPase, AAA family protein [Synechococcus sp. RS9916]
          Length = 736

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 74/149 (49%), Gaps = 12/149 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR LEEF GQ    +  ++   A  A  + + ++L  GPPG+GKTTLA+++A     +
Sbjct: 24  MRPRNLEEFVGQGAILAEGRLLRRAIAA--DRVGNLLLHGPPGVGKTTLARIIANHTRAH 81

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F S +  V+A   DL   +            R +LFIDE+HR +   ++ L P +E+  L
Sbjct: 82  FSSLNA-VLAGVKDLRTEVDAARQRLDRHGLRTILFIDEVHRFNSAQQDALLPWVENGTL 140

Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATT 161
            L+    E P     K  +SR  L    T
Sbjct: 141 TLIGATTENPYFEVNKALVSRSRLFRLQT 169


>gi|307718299|ref|YP_003873831.1| ATPase, AAA family [Spirochaeta thermophila DSM 6192]
 gi|306532024|gb|ADN01558.1| ATPase, AAA family [Spirochaeta thermophila DSM 6192]
          Length = 745

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 75/264 (28%), Positives = 118/264 (44%), Gaps = 40/264 (15%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRTL+EF GQ       ++   A +A  + L  V+F GPPG GKTTLA+V+A      
Sbjct: 23  MRPRTLDEFVGQEHILGPGRLLRRAIQA--DRLSSVIFYGPPGCGKTTLARVIANHTKSA 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F S +  V++   ++ A +            R +LF+DE+HR +   ++ L P +E+  +
Sbjct: 81  FLSLNA-VLSGVQEVRAAIEKARQEMAYHGRRTILFVDEVHRWNKAQQDALLPWVENGTV 139

Query: 135 DLM--VGEGP--SARSVKINLSRFTLIAATTRVGL-------LTNPLQDRFGIPIRLNFY 183
            L+    + P     S  I+ SR   +   TR  L       L +P +      I ++  
Sbjct: 140 ILIGATTQNPYFEVNSALISRSRIFQLTPLTREHLRTIAERALKDPERGYGKYRIIMDDD 199

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            +E L T+    A+    A+  E A E    +   P              EV H   ITR
Sbjct: 200 ALEHLITVADGDARTLLSAI--ELAVETTPDTFPPPE------------GEVIH---ITR 242

Query: 244 EIADAALLRLAI--DKMGFDQLDL 265
           E+A+ ++ R A+  DK G    D+
Sbjct: 243 EVAEDSIQRKAVLYDKEGDFHYDI 266


>gi|148554570|ref|YP_001262152.1| recombination factor protein RarA [Sphingomonas wittichii RW1]
 gi|148499760|gb|ABQ68014.1| Recombination protein MgsA [Sphingomonas wittichii RW1]
          Length = 444

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 75/158 (47%), Gaps = 21/158 (13%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP  +E+  GQ               AR   L  ++F GPPG+GKTTLA+++A  +G+ 
Sbjct: 27  LRPTRIEDVVGQEHLTGPDAPLARMVAARR--LSSIIFWGPPGIGKTTLARLLADLVGMR 84

Query: 82  FRSTSGPVIAKAGDLAALLT-----NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD- 135
           F + S   +  AG  AA         +  R VLF+DE HR +  + E L P MED  +  
Sbjct: 85  FEAFSATDVTVAGLKAAYAEAKRHLRMGKRTVLFLDESHRAARNITETLLPVMEDGTITA 144

Query: 136 -LMVGEGPSARSVKINLSRFTLIAA-TTRVGLLT-NPL 170
            L   E PS          FTL    T+R  +LT NPL
Sbjct: 145 ILATTEAPS----------FTLPKGITSRARVLTLNPL 172


>gi|73748992|ref|YP_308231.1| recombination factor protein RarA [Dehalococcoides sp. CBDB1]
 gi|73660708|emb|CAI83315.1| ATPase, AAA family [Dehalococcoides sp. CBDB1]
          Length = 457

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 72/139 (51%), Gaps = 17/139 (12%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP TL EF GQ         L++ +E+ K     +  ++F GPPG GKTTLA ++A  L
Sbjct: 27  MRPETLAEFVGQSHLIGEGRALRLSLESDK-----IPSLIFWGPPGSGKTTLANIIAHSL 81

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131
             +F + S  V A   DL  ++    +       R +LFIDEIHR +   ++ + P +ED
Sbjct: 82  DAHFSALSA-VSAGVADLRRVVEEARERLKLYHRRTILFIDEIHRFNKSQQDAILPYVED 140

Query: 132 FQLDLMVGEGPSARSVKIN 150
             + +++G      S ++N
Sbjct: 141 GTV-VLIGATTENPSFEVN 158


>gi|160889857|ref|ZP_02070860.1| hypothetical protein BACUNI_02288 [Bacteroides uniformis ATCC 8492]
 gi|156860849|gb|EDO54280.1| hypothetical protein BACUNI_02288 [Bacteroides uniformis ATCC 8492]
          Length = 423

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/147 (34%), Positives = 76/147 (51%), Gaps = 18/147 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPRTL+E+ GQ   V   + L+  I+A +     +   +  GPPG+GKTTLAQ++A +L
Sbjct: 8   LRPRTLDEYIGQKHLVGPGAVLRKMIDAGR-----ISSFILWGPPGVGKTTLAQIIANKL 62

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V +   D+  ++   +          +LFIDEIHR S   ++ L  A+E 
Sbjct: 63  ETPFYTLSA-VTSGVKDVRDVIERAKSNRFFSQASPILFIDEIHRFSKSQQDSLLGAVEQ 121

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156
             + L+    E PS   ++  LSR  L
Sbjct: 122 GTVTLIGATTENPSFEVIRPLLSRCQL 148


>gi|218507489|ref|ZP_03505367.1| recombination factor protein RarA [Rhizobium etli Brasil 5]
          Length = 250

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/138 (34%), Positives = 73/138 (52%), Gaps = 16/138 (11%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL E TGQ     +   LK  IE+      +L  ++F GPPG GKTT+A+++  E 
Sbjct: 24  LRPKTLAEVTGQDHLTGDDGVLKRMIESG-----SLGSMIFWGPPGTGKTTVARLLPGEA 78

Query: 79  GVNFRSTSGPVIAKAGDL-----AALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMEDF 132
           G+ F   S  + +   DL      A L  ++ R  +LF+DEIHR +   ++   P MED 
Sbjct: 79  GLAFEHISA-IFSGVADLKKVFETARLRRMDGRQTLLFVDEIHRFNRAQQDSFLPVMEDG 137

Query: 133 QLDLMVGEGPSARSVKIN 150
            + ++VG      S ++N
Sbjct: 138 TV-ILVGATTENPSFELN 154


>gi|302872103|ref|YP_003840739.1| AAA ATPase central domain protein [Caldicellulosiruptor obsidiansis
           OB47]
 gi|302574962|gb|ADL42753.1| AAA ATPase central domain protein [Caldicellulosiruptor obsidiansis
           OB47]
          Length = 441

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 103/222 (46%), Gaps = 36/222 (16%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ LEE  GQ    S  K      K   + L  ++  GPPG GKTT+A V+A   G  
Sbjct: 22  LRPKRLEEIVGQEHILSPGKPLYNLIKN--DRLTSIILYGPPGTGKTTIAHVIANATGKT 79

Query: 82  FRSTSGPVIAKAGDLAALL-------TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F++ +   IA   D+  ++       +    + +LFIDEIHR + + ++ L P++E+  +
Sbjct: 80  FKTINA-TIAGVNDIKKIIEEAKIEFSQTGKKTILFIDEIHRFNKLQQDALLPSVEE-GI 137

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
            +++G        ++N +   L++ +    L   PL++             ED+  I++R
Sbjct: 138 IILIGATTENPFYEVNKA---LVSRSLVFELF--PLKE-------------EDILKIIER 179

Query: 195 GA--KLTGLA-----VTDEAACEIAMRSRGTPRIAGRLLRRV 229
               K  GL      + D+A   IA  S G  R+A  +L  V
Sbjct: 180 AISDKENGLGELNIQIDDDAKKLIAKLSGGDARVALNILEAV 221


>gi|212550412|ref|YP_002308729.1| hypothetical protein CFPG_055 [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212548650|dbj|BAG83318.1| conserved hypothetical protein [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 438

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/146 (34%), Positives = 76/146 (52%), Gaps = 22/146 (15%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP++L +F GQ   V   S L+  IE      E +   +  GPPG+GKTTLA++++ ++
Sbjct: 22  MRPQSLNDFFGQKHLVGEGSILRRMIEG-----EYISSFILWGPPGVGKTTLARIISNQM 76

Query: 79  GVNFRSTS---------GPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
            + F   S         G VI KA D+      +  R +LFIDEIHR S   ++ L  A+
Sbjct: 77  NIPFFMLSAVNSGLKDIGKVIDKAKDV-RFFNGV--RPILFIDEIHRFSKSQQDFLLTAV 133

Query: 130 EDFQLDLM--VGEGPSARSVKINLSR 153
           ED  + L+    E PS   ++  LSR
Sbjct: 134 EDRTIILIGATTENPSFEVIRPLLSR 159


>gi|270294113|ref|ZP_06200315.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275580|gb|EFA21440.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 423

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/147 (34%), Positives = 76/147 (51%), Gaps = 18/147 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPRTL+E+ GQ   V   + L+  I+A +     +   +  GPPG+GKTTLAQ++A +L
Sbjct: 8   LRPRTLDEYIGQKHLVGPGAVLRKMIDAGR-----ISSFILWGPPGVGKTTLAQIIANKL 62

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V +   D+  ++   +          +LFIDEIHR S   ++ L  A+E 
Sbjct: 63  ETPFYTLSA-VTSGVKDVRDVIERAKSNRFFSQASPILFIDEIHRFSKSQQDSLLGAVEQ 121

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156
             + L+    E PS   ++  LSR  L
Sbjct: 122 GTVTLIGATTENPSFEVIRPLLSRCQL 148


>gi|319902448|ref|YP_004162176.1| Recombination protein MgsA [Bacteroides helcogenes P 36-108]
 gi|319417479|gb|ADV44590.1| Recombination protein MgsA [Bacteroides helcogenes P 36-108]
          Length = 422

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/147 (34%), Positives = 76/147 (51%), Gaps = 18/147 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TLEE+ GQ   V   + L+  I+A +     +   +  GPPG+GKTTLAQ++A +L
Sbjct: 8   LRPKTLEEYIGQKHLVGPGAVLRKMIDAGR-----ISSFILWGPPGVGKTTLAQIIANKL 62

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V +   D+  ++   +          +LFIDEIHR S   ++ L  A+E 
Sbjct: 63  DTPFYTLSA-VTSGVKDVRDVIERAKGNRFFSQASPILFIDEIHRFSKSQQDSLLGAVEQ 121

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156
             + L+    E PS   ++  LSR  L
Sbjct: 122 GTVTLIGATTENPSFEVIRPLLSRCQL 148


>gi|227892533|ref|ZP_04010338.1| recombination ATPase [Lactobacillus ultunensis DSM 16047]
 gi|227865654|gb|EEJ73075.1| recombination ATPase [Lactobacillus ultunensis DSM 16047]
          Length = 441

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 95/192 (49%), Gaps = 21/192 (10%)

Query: 2   MDREGLLSRNVSQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M  E L S  ++ +D +  L   +RP++L+EF GQ +     K+  E  +   + +  ++
Sbjct: 1   MKEESLFS--LANQDENTPLADRVRPQSLDEFVGQKDLIGKGKILRELIEK--DKVPSLI 56

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFID 112
             GPPG GKTTLA+++A+    +F + S  V +   D+  ++   E      ++ ++FID
Sbjct: 57  LWGPPGTGKTTLAEIIAKHTKAHFITFSA-VTSSIKDIRKIMEEAESNRQFGEKTIVFID 115

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSR---FTLIAATTR--VGL 165
           EIHR +   ++   P +E   + L+    E PS       LSR   F L + +T   V L
Sbjct: 116 EIHRFNKAQQDAFLPFVEQGSITLIGATTENPSFEVNSALLSRAKVFVLHSLSTEDIVLL 175

Query: 166 LTNPLQDRFGIP 177
           L   +++  G P
Sbjct: 176 LKRAIKNPNGFP 187


>gi|161760546|ref|NP_907435.2| recombination factor protein RarA [Wolinella succinogenes DSM 1740]
          Length = 396

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/119 (35%), Positives = 64/119 (53%), Gaps = 12/119 (10%)

Query: 21  LLRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           LLRP + E+  GQ     A + L+  IE       +L H  F GPPG GKT+ A+++A+ 
Sbjct: 7   LLRPTSFEDLIGQEHLFGANAPLRRLIEHG-----SLPHAFFYGPPGTGKTSAAKIIAKR 61

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           L   F   +     K  +L + L   ++   + +LFIDE+HRLS   +E+L P ME+ +
Sbjct: 62  LDRPFALFNATTF-KIEELRSYLKEYKNALLKPLLFIDEVHRLSKNQQEVLLPLMENHE 119


>gi|253700393|ref|YP_003021582.1| recombination factor protein RarA [Geobacter sp. M21]
 gi|251775243|gb|ACT17824.1| AAA ATPase central domain protein [Geobacter sp. M21]
          Length = 434

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 118/265 (44%), Gaps = 51/265 (19%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPR++ ++ GQ   V     L+  IE+ +     L  ++F GPPG GKTTLA+++A   
Sbjct: 19  MRPRSMAQYLGQGHLVGEGKMLRRLIESDR-----LTSLIFWGPPGSGKTTLARIIANAT 73

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAME- 130
             +F   S  +++   ++  ++   ED       R +LF+DEIHR +   ++   P +E 
Sbjct: 74  SSHFIFFSA-IMSGIKEIREVVKEAEDTLKYQGKRTILFVDEIHRFNKSQQDAFLPHVER 132

Query: 131 -DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             F +     E PS   +   LSR  +        L+  PL D             EDL 
Sbjct: 133 GTFTIIGATTENPSFEVIAPLLSRCKV--------LVLQPLSD-------------EDLL 171

Query: 190 TIV-------QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            I+       +RG     L  T EA   +A ++ G  R+A   L  +   + +AH   IT
Sbjct: 172 KILEIALADRERGLGDLELGATAEALAFMAEQAAGDARVA---LNTLETASRLAHHGEIT 228

Query: 243 REIADAALLR--LAIDKMGFDQLDL 265
            E A  A+ +  L  DK G +  ++
Sbjct: 229 LESAREAVQKKPLLYDKGGEEHYNV 253


>gi|108803881|ref|YP_643818.1| recombination factor protein RarA [Rubrobacter xylanophilus DSM
           9941]
 gi|108765124|gb|ABG04006.1| Recombination protein MgsA [Rubrobacter xylanophilus DSM 9941]
          Length = 429

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 81/277 (29%), Positives = 121/277 (43%), Gaps = 52/277 (18%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAA-KARAEALDHVLF 59
           + D+ G  S N++        LRPR+L+E  GQ           EAA + R   +  V+ 
Sbjct: 3   LFDQSG--SENLAARAPLAERLRPRSLDEVVGQPHLAGEGGPLREAAERGR---VGSVIL 57

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFID 112
            GPPG GKTTLA+V+A  +   F   S  V +   DL A L    +R        +LF+D
Sbjct: 58  WGPPGTGKTTLARVLAASVEEEFVPLSA-VTSGVRDLRAALDGARERLKYEGRGTLLFVD 116

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL--LTNPL 170
           E+HR +   ++ L PA+E+  +D                     I ATT      +T PL
Sbjct: 117 EVHRFNKAQQDALLPALEEGLVD--------------------FIGATTENPSFEVTAPL 156

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
             R  + +RL      DL+ +++RG    G+ ++ EA   +        R+AG   RR+ 
Sbjct: 157 LSRSRV-LRLRPLSKGDLEALLERGLSELGVGISGEARDYLL-------RLAGGDARRML 208

Query: 231 DFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRY 267
           +  EV  A +  RE+  A + R         Q  LRY
Sbjct: 209 NALEV--AASGRREVGVAEIER------ALGQRALRY 237


>gi|283768972|ref|ZP_06341878.1| recombination factor protein RarA [Bulleidia extructa W1219]
 gi|283104329|gb|EFC05706.1| recombination factor protein RarA [Bulleidia extructa W1219]
          Length = 441

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 72/133 (54%), Gaps = 16/133 (12%)

Query: 11  NVSQEDAD-----ISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           N+ QE++D     ++L +RP+TL+E  GQ    +  K+   A   +A+ L  ++  GPPG
Sbjct: 2   NLFQEESDELKEPLALRMRPKTLDEVVGQTHILAKDKLLYRAI--QADRLSSLILTGPPG 59

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRL 117
            GKT+LA VVA+    +F   +  V  K  DL  ++ +         ++ +LFIDEIHR 
Sbjct: 60  TGKTSLAMVVAQSTKSHFEQVNATVAGKK-DLEKIVEDASVRKERYGEKTILFIDEIHRF 118

Query: 118 SIIVEEILYPAME 130
           +   ++ L P +E
Sbjct: 119 NKGQQDYLLPFVE 131


>gi|268319502|ref|YP_003293158.1| recombination factor protein RarA [Lactobacillus johnsonii FI9785]
 gi|262397877|emb|CAX66891.1| recombination factor protein RarA [Lactobacillus johnsonii FI9785]
          Length = 420

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           L+RP+ L  F GQ +     +   +  K        +L  GPPG GKT+LAQ++ARE   
Sbjct: 10  LIRPKDLSHFVGQKDLIKEGQPLYQIIKNHVPI--SLLLWGPPGTGKTSLAQIIAREYDY 67

Query: 81  NFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
              + +     KA  +  + T      VL IDEIHR++  +++ L P +E+ Q+ L++G
Sbjct: 68  PLATFNASTDNKAKLMQIINTYPYQSFVLLIDEIHRMTTTLQDYLLPYLENGQI-LLIG 125


>gi|218460214|ref|ZP_03500305.1| recombination factor protein RarA [Rhizobium etli Kim 5]
          Length = 255

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/138 (34%), Positives = 74/138 (53%), Gaps = 16/138 (11%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL + TGQ         LK  IE+      +L  ++F GPPG GKTT+A++++ E 
Sbjct: 24  LRPKTLADVTGQDHLTGEDGVLKRMIESG-----SLGSMIFWGPPGTGKTTVARLLSGEA 78

Query: 79  GVNFRSTSGPVIAKAGDL-----AALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMEDF 132
           G+ F   S  + +   DL     AA +  ++ R  +LF+DEIHR +   ++   P MED 
Sbjct: 79  GLAFEQISA-IFSGVADLKKVFEAARMRRMDGRQTLLFVDEIHRFNRAQQDSFLPVMEDG 137

Query: 133 QLDLMVGEGPSARSVKIN 150
            + ++VG      S ++N
Sbjct: 138 TV-ILVGATTENPSFELN 154


>gi|213622415|ref|ZP_03375198.1| Holliday junction DNA helicase B [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 54

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/51 (64%), Positives = 39/51 (76%)

Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           GL ++D+ A E+A R+RGTPRIA RLLRRVRDFAEV H   I+ EIA  AL
Sbjct: 2   GLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGAISAEIAAQAL 52


>gi|260903841|ref|ZP_05912163.1| recombination factor protein RarA [Brevibacterium linens BL2]
          Length = 499

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/120 (36%), Positives = 62/120 (51%), Gaps = 11/120 (9%)

Query: 22  LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRT+ E  GQ       S L   +EA+         V+  GPPG+GKTTLA V++   
Sbjct: 40  MRPRTIAEVVGQDHLTFPGSPLVQLVEASGGDRAGASSVILWGPPGVGKTTLAHVISHAP 99

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNL-EDRD------VLFIDEIHRLSIIVEEILYPAMED 131
           G  F   S  + A   D+  ++ N   +RD      VLF+DEIHR S   ++ L PA+E+
Sbjct: 100 GRTFVELSA-ITAGVKDVRQVIENARRERDMYQRTTVLFLDEIHRFSKAQQDALLPAVEN 158


>gi|116493737|ref|YP_805471.1| recombination factor protein RarA [Lactobacillus casei ATCC 334]
 gi|239630989|ref|ZP_04674020.1| recombination factor protein RarA [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|301065310|ref|YP_003787333.1| helicase subunit of the Holliday junction resolvase-like ATPase
           [Lactobacillus casei str. Zhang]
 gi|116103887|gb|ABJ69029.1| Recombination protein MgsA [Lactobacillus casei ATCC 334]
 gi|239527272|gb|EEQ66273.1| recombination factor protein RarA [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|300437717|gb|ADK17483.1| Helicase subunit of the Holliday junction resolvase related ATPase
           [Lactobacillus casei str. Zhang]
          Length = 448

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 114/264 (43%), Gaps = 43/264 (16%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           S +RP+TL+EF GQ       KV   +     + +  ++F GPPG+GKTTLA+++AR   
Sbjct: 16  SRMRPQTLDEFVGQTHLLGKDKVL--SNLIEHDEISSMIFWGPPGVGKTTLARIIARRTK 73

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             F + S  V +   ++  ++   E       + ++F+DEIHR +   ++   P +E   
Sbjct: 74  AQFVTFSA-VTSGIKEIKQVMKEAEQNRELGQKTIVFVDEIHRFNKAQQDAFLPYVERGS 132

Query: 134 LDLMVGEGPSARSVKIN---LSR---FTLIAATTR--VGLLTNPLQDRFGIPIRLNFYEI 185
           + +++G      S ++N   LSR   F L   T+   V LL   L+D             
Sbjct: 133 I-ILIGATTENPSFEVNAALLSRTRVFVLHGLTSAELVDLLQRALKD------------- 178

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
                   RG  L  + +  +   +IA  + G  RIA   L      AE      IT   
Sbjct: 179 -------PRGYGLQKVKIGKKLLAQIADFANGDARIALNTLEMAVTNAETK-GGVITVTQ 230

Query: 246 ADAALL----RLAIDKMGFDQLDL 265
           AD A L     L  DK G +  +L
Sbjct: 231 ADVAQLLTKKALLYDKNGEEHYNL 254


>gi|259416571|ref|ZP_05740491.1| recombination factor protein RarA [Silicibacter sp. TrichCH4B]
 gi|259348010|gb|EEW59787.1| recombination factor protein RarA [Silicibacter sp. TrichCH4B]
          Length = 443

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/137 (33%), Positives = 73/137 (53%), Gaps = 14/137 (10%)

Query: 22  LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPRTL E  GQ +   A + L V + +      +L  ++F GPPG+GKTT+A+++A+E 
Sbjct: 30  LRPRTLAEVIGQEQVLGAEAPLGVMLASG-----SLSSLIFWGPPGVGKTTIARLLAQET 84

Query: 79  GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
            ++F   S      P + K  + A +        +LF+DEIHR +   ++   P MED  
Sbjct: 85  DLHFVQISAIFTGVPDLKKVFEAAKIRRQNGQGTLLFVDEIHRFNKAQQDGFLPHMEDGT 144

Query: 134 LDLMVGEGPSARSVKIN 150
           + L+VG      S ++N
Sbjct: 145 I-LLVGATTENPSFELN 160


>gi|153806769|ref|ZP_01959437.1| hypothetical protein BACCAC_01041 [Bacteroides caccae ATCC 43185]
 gi|149131446|gb|EDM22652.1| hypothetical protein BACCAC_01041 [Bacteroides caccae ATCC 43185]
          Length = 423

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 77/147 (52%), Gaps = 18/147 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL+E+ GQ   V   + L+  I+A +     +   +  GPPG+GKTTLAQ++A +L
Sbjct: 8   LRPKTLDEYIGQKHLVGPGAILRKMIDAGR-----ISSFILWGPPGVGKTTLAQIIANKL 62

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V +   D+  ++          +   +LFIDEIHR S   ++ L  A+E+
Sbjct: 63  ETPFYTLSA-VTSGVKDVREVIDRAKSNRFFSQSSPILFIDEIHRFSKSQQDSLLGAVEN 121

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156
             + L+    E PS   ++  LSR  L
Sbjct: 122 GTVTLIGATTENPSFEVIRPLLSRCQL 148


>gi|300361690|ref|ZP_07057867.1| crossover junction endodeoxyribonuclease [Lactobacillus gasseri
           JV-V03]
 gi|300354309|gb|EFJ70180.1| crossover junction endodeoxyribonuclease [Lactobacillus gasseri
           JV-V03]
          Length = 426

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 87/357 (24%), Positives = 132/357 (36%), Gaps = 73/357 (20%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           L+RP+ L +F GQ +     +   +  K        +L  GPPG GKT+LAQ++ARE   
Sbjct: 10  LIRPKDLSQFVGQKDLIEKERPLYQIIKKHVPI--SLLLWGPPGTGKTSLAQIIAREFDY 67

Query: 81  NFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
              + +  +  KA     + T      VL IDEIHR++  +++ L P +E+         
Sbjct: 68  PLATFNASIDNKAKLTQIINTYPYQSFVLLIDEIHRMTTTLQDFLLPYLEN--------- 118

Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRF-GIPIRLNFYEI-----EDLKTIVQR 194
                       R  LI ATT      NP+      +  R   +E      ED++ ++ R
Sbjct: 119 -----------GRILLIGATTE-----NPIMSIVPAVRSRCQIFEFKTLSDEDIEQVLVR 162

Query: 195 GAK----LTGLAVTDEAACEIAMRSRGTPRIAGRLL------------RRVRDFAEVAHA 238
             K         +  +A   IA+ + G  R+A  LL              VR F +  H 
Sbjct: 163 ALKEVFHFKDENIDRKAVKIIAISADGDLRVALNLLETIHAVNEDLSAEEVRQFVKGQHF 222

Query: 239 KTITREIADAALLRLAIDKMGFDQLD--LRYLTMIARNFGGGPV------GIETISAGLS 290
               +       L    D M     D  L YL ++ +N G  P        I     GL+
Sbjct: 223 AYDRKATKHYDYLAAYSDSMAGSDTDAALYYLAVLLKN-GDLPSVVRRLREIPYTYIGLA 281

Query: 291 EPRDAIEDLIE--------------PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            P  A + +I               P M     +  +P+  +   I WQ L  D  H
Sbjct: 282 NPEQATQIVIAANQAEKIGMPKAKYPLMFATMLMCLSPKSGVFDEI-WQKLDEDTDH 337


>gi|209548968|ref|YP_002280885.1| recombination factor protein RarA [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209534724|gb|ACI54659.1| AAA ATPase central domain protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 438

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/138 (34%), Positives = 74/138 (53%), Gaps = 16/138 (11%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL + TGQ         LK  IE+     ++L  ++F GPPG GKTT+A++++ E 
Sbjct: 24  LRPKTLADVTGQEHLTGEDGVLKRMIES-----DSLGSMIFWGPPGTGKTTVARLLSGEA 78

Query: 79  GVNFRSTSGPVIAKAGDL-----AALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMEDF 132
           G+ F   S  + +   DL      A L  ++ R  +LF+DEIHR +   ++   P MED 
Sbjct: 79  GLAFEQISA-IFSGVADLKKMFETARLRRMDGRQTLLFVDEIHRFNRAQQDSFLPVMEDG 137

Query: 133 QLDLMVGEGPSARSVKIN 150
            + ++VG      S ++N
Sbjct: 138 TV-ILVGATTENPSFELN 154


>gi|183220685|ref|YP_001838681.1| recombination factor protein RarA [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189910786|ref|YP_001962341.1| recombination factor protein RarA [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167775462|gb|ABZ93763.1| helicase-like ATPase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167779107|gb|ABZ97405.1| Putative ATPase involved in DNA replication [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 419

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/152 (33%), Positives = 73/152 (48%), Gaps = 27/152 (17%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           L+RP+T  EF GQ +  + L+   +           +LF GPPG GKTTLA ++A    +
Sbjct: 16  LVRPKTWSEFVGQTKVVAALRSITKPTS--------ILFYGPPGTGKTTLAHLLAESWKL 67

Query: 81  NFRS----TSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
             R     TSG      V+ +   L  +        VLF+DEIHR S   ++ L  A+E+
Sbjct: 68  EKRYLSCVTSGVKEVREVLEEGKRLGTI--------VLFLDEIHRFSSSQQDALLSAVEE 119

Query: 132 FQLDLMVG--EGPSARSVKINLSRFTLIAATT 161
            ++ L+    E PS R  K  LSR  +   TT
Sbjct: 120 GEIILIAATTENPSFRVNKALLSRMLVYRLTT 151


>gi|329121015|ref|ZP_08249646.1| replication-associated recombination protein A [Dialister
           micraerophilus DSM 19965]
 gi|327471177|gb|EGF16631.1| replication-associated recombination protein A [Dialister
           micraerophilus DSM 19965]
          Length = 435

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 76/277 (27%), Positives = 127/277 (45%), Gaps = 49/277 (17%)

Query: 11  NVSQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           ++ Q++  I L   +RP  LE+  GQ  +  + + F+     + + +  +L  GPPG GK
Sbjct: 6   DIKQDNTYIPLADRMRPDKLEDIVGQKNSIGS-QSFLYKMICK-DLVPSLLLFGPPGCGK 63

Query: 68  TTLAQVVARELGVN---FRSTSGPVIAKAGDLAAL-----LTNLEDRDVLFIDEIHRLSI 119
           TT+A+V+A     N   F +T   +  K   L A+     L     + +LFIDEIHR + 
Sbjct: 64  TTIAKVIASTTKSNFIKFNATENGI--KEIRLIAIKAEENLKFYNKKTILFIDEIHRFNK 121

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
             +++L P  ED  L L+   G +  +   +L+R    A  +R+ L            +R
Sbjct: 122 SQQDVLLPYTEDGTLTLI---GATTENPYFSLNR----ALLSRIRL------------VR 162

Query: 180 LNFYEIEDLKTIVQ-------RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           L    I+D+ +I++       +G         +++  EIA+ + G  RIA  LL +V   
Sbjct: 163 LTELSIDDIISILKNALTNKDKGLGKYNYEYNEKSLKEIAVFANGDTRIALNLLEQVTSL 222

Query: 233 AEVAHAKTIT----REIADAALLRLAIDKMGFDQLDL 265
             VA   TIT    +E+A   +     DK G +  D+
Sbjct: 223 --VAPNGTITENLVKEVAGEQI--FLYDKKGDNHYDV 255


>gi|317124709|ref|YP_004098821.1| recombination protein MgsA [Intrasporangium calvum DSM 43043]
 gi|315588797|gb|ADU48094.1| Recombination protein MgsA [Intrasporangium calvum DSM 43043]
          Length = 466

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/148 (35%), Positives = 78/148 (52%), Gaps = 14/148 (9%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPR+L+E  GQ   +   S L+  IE +   A  L  +++ GPPG GKTTLA +VA   
Sbjct: 31  MRPRSLDEVRGQGSVLRPGSPLRRLIEGSGGAAGPLSAIIW-GPPGTGKTTLAHLVATAA 89

Query: 79  GVNFRSTSGPVIAKAGDLAALL-TNLEDRD------VLFIDEIHRLSIIVEEILYPAMED 131
              F   S  V A   D+ +++ + + +RD      VLF+DEIHR +   ++ L P +E+
Sbjct: 90  DRRFVELSA-VTAGVKDVRSVMESAVRERDLYGRQTVLFLDEIHRFTKAQQDALLPGVEN 148

Query: 132 FQLDLMVG--EGPSARSVKINLSRFTLI 157
             + L+    E PS   +   LSR  LI
Sbjct: 149 RTVILVAATTENPSFSVIAPLLSRSVLI 176


>gi|315918924|ref|ZP_07915164.1| recombination factor protein RarA [Bacteroides sp. D2]
 gi|313692799|gb|EFS29634.1| recombination factor protein RarA [Bacteroides sp. D2]
          Length = 322

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 76/264 (28%), Positives = 120/264 (45%), Gaps = 50/264 (18%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL+E+ GQ   V   + L+  I+A +     +   +  GPPG+GKTTLAQ++A +L
Sbjct: 8   LRPKTLDEYIGQKHLVGPGAILRKMIDAGR-----ISSFILWGPPGVGKTTLAQIIANKL 62

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V +   D+  ++          +   +LFIDEIHR S   ++ L  A+E+
Sbjct: 63  ETPFYTLSA-VTSGVKDVREVIDRAKSNRFFSQSSPILFIDEIHRFSKSQQDSLLGAVEN 121

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             + L+    E PS   ++  LSR  L                       L   E EDL+
Sbjct: 122 GTVTLIGATTENPSFEVIRPLLSRCQLYV---------------------LKSLEKEDLQ 160

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE-VAHAKT-----ITR 243
            ++QR   +T  A+  E   E+   +    R +G   R++ +  E V  ++T     IT 
Sbjct: 161 ELLQRA--ITTDAILKERKIELK-ETTAMLRFSGGDARKLLNILELVVQSETEETVVITD 217

Query: 244 EIADAALLR--LAIDKMGFDQLDL 265
           E+    L +  LA DK G    D+
Sbjct: 218 EMVTERLQQNPLAYDKDGEMHYDI 241


>gi|220904438|ref|YP_002479750.1| recombination factor protein RarA [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219868737|gb|ACL49072.1| AAA ATPase central domain protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 407

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 99/230 (43%), Gaps = 36/230 (15%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  L  F GQ    S L+  ++A +     L  +LF GPPG GK+TLA ++A+  G  
Sbjct: 11  MRPDDLALFLGQTHLGSRLRSLMQAKR-----LPSLLFFGPPGCGKSTLALLLAKGTGKT 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VG 139
           F   S P   +AG L  L  +L   ++L +DE+HR S   ++   P +E   L L+    
Sbjct: 66  FLRLSAP---EAG-LQHLRRSLSGIEILVLDELHRFSKAQQDFFLPLVESGDLTLLATTT 121

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199
           E PS    +  LSR  +                     +RL      +L  + +RGA   
Sbjct: 122 ENPSFSVTRQLLSRLHV---------------------LRLRPLGRTELVELARRGAMDL 160

Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRV----RDFAEVAHAKTITREI 245
            + + DE A  +A  + G  R    L+  V     D  E+ H K    E+
Sbjct: 161 QVEMPDELAELLAGVAHGDARTLLNLVEYVAALPSDLREIEHIKAALPEV 210


>gi|312134908|ref|YP_004002246.1| AAA ATPase central domain-containing protein [Caldicellulosiruptor
           owensensis OL]
 gi|311774959|gb|ADQ04446.1| AAA ATPase central domain protein [Caldicellulosiruptor owensensis
           OL]
          Length = 441

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 61/117 (52%), Gaps = 10/117 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ LEE  GQ    S  K      K   + L  ++  GPPG GKTT+A V+A   G  
Sbjct: 22  LRPKRLEEIVGQEHILSPGKPLYNLIKN--DKLTSIILYGPPGTGKTTIAHVIANATGKT 79

Query: 82  FRSTSGPVIAKAGDLAALL-------TNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
           F++ +   IA   D+  ++       +    + +LFIDEIHR + + ++ L P++E+
Sbjct: 80  FKTINA-TIAGVNDIKRIIEEAKIEFSQTGKKTILFIDEIHRFNKLQQDALLPSVEE 135


>gi|325068849|ref|ZP_08127522.1| AAA ATPase central domain protein [Actinomyces oris K20]
          Length = 464

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/148 (35%), Positives = 73/148 (49%), Gaps = 27/148 (18%)

Query: 22  LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEA---------------LDHVLFVGPP 63
           +RPRTL+E  GQ       S L+  +E A+A   +               L  V+  GPP
Sbjct: 26  MRPRTLDELQGQTHLLTPGSPLRRLVEPAEASGGSHAGERGAAARPSSSSLSSVILWGPP 85

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRL 117
           G GKTTLA +VAR  G  F   S  V A   D+ A++++   R       VLFIDE+HR 
Sbjct: 86  GTGKTTLAYLVARGSGRRFVELSA-VTAGVKDVRAVVSDARRRLAAGEETVLFIDEVHRF 144

Query: 118 SIIVEEILYPAMEDFQLDLMVG--EGPS 143
           S   ++ L P++E+  + L+    E PS
Sbjct: 145 SRSQQDALLPSVENRWVTLIAATTENPS 172


>gi|91200409|emb|CAJ73456.1| similar to ATPase related to the helicase subunit of the Holliday
           junction resolvase [Candidatus Kuenenia stuttgartiensis]
          Length = 478

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 82/169 (48%), Gaps = 23/169 (13%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPR L EF GQ         L+ FIE  +     L  ++F GPPG+GKTTLA ++A  +
Sbjct: 55  MRPRNLSEFVGQEHLVGEGKILRSFIENKE-----LVSLIFWGPPGVGKTTLALIIANAM 109

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131
             +F + S  V++   ++ A++   ++       R VLF+DEIHR +   ++     +ED
Sbjct: 110 NAHFITFSA-VLSGVKEIRAVIEEAKEQLKFNGKRTVLFVDEIHRFNKAQQDSFLHHVED 168

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIA-----ATTRVGLLTNPLQDR 173
             + L+    E PS       LSR  ++       +    +L N L DR
Sbjct: 169 GTITLIGATTENPSFEVNSPLLSRCKVLVLEPLRKSHITAILLNALSDR 217


>gi|95930182|ref|ZP_01312921.1| AAA ATPase, central region [Desulfuromonas acetoxidans DSM 684]
 gi|95133876|gb|EAT15536.1| AAA ATPase, central region [Desulfuromonas acetoxidans DSM 684]
          Length = 439

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 113/234 (48%), Gaps = 44/234 (18%)

Query: 7   LLSRNVSQEDADIS-LLRPRTLEEFTGQ----VEACSNLKVFIEAAKARAEALDHVLFVG 61
           L S  +S +   ++  +RP+ L+E  GQ     + C  L+  IEA     + L  ++F G
Sbjct: 3   LFSSTISDDQTPLAERMRPQHLDEVVGQQHLLADGCP-LRQIIEA-----DQLSSLIFWG 56

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEI 114
           PPG GKTTLAQV+A+     F   S  ++    D+  +++  ++       R +LF+DEI
Sbjct: 57  PPGTGKTTLAQVIAQSTRSRFVFFSA-IMNGVKDIRHIVSRAKEDRSMYGTRTILFVDEI 115

Query: 115 HRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRF 174
           HR +   ++   PA+E   L +++G      S ++N +    + +  RV +L  PLQ   
Sbjct: 116 HRFNKSQQDAFLPALEKGDL-ILIGATTENPSFEVNAA----LLSRARVFVL-KPLQH-- 167

Query: 175 GIPIRLNFYEIEDLKTIVQRG-AKLTGLA-----VTDEAACEIAMRSRGTPRIA 222
                      +D+  ++QR  +   GLA     V+ EA   +A  ++G  R+A
Sbjct: 168 -----------DDIVLLLQRALSDPRGLADQKPDVSQEALDHLAQLAQGDARVA 210


>gi|90579109|ref|ZP_01234919.1| putative ATPase protein [Vibrio angustum S14]
 gi|90439942|gb|EAS65123.1| putative ATPase protein [Vibrio angustum S14]
          Length = 446

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 96/221 (43%), Gaps = 25/221 (11%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRT+EE+ GQ       K    A +     L  ++  GPPG GKTTLA+V A      
Sbjct: 19  MRPRTVEEYIGQQHILGQGKPLRRALEG--GQLHSMILWGPPGTGKTTLAEVAAHYANAE 76

Query: 82  FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
               S  V +   D+ A +    D      R +LF+DE+HR +   ++   P +ED  + 
Sbjct: 77  VERVSA-VTSGIKDIRAAIDKARDNKMAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVT 135

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
            +    E PS       LSR        RV  L + L+D   + +      IE   T  +
Sbjct: 136 FIGATTENPSFELNNALLSR-------ARVYKLKS-LEDDEILQV------IEQALTDKE 181

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
           RG   T +   D+   ++A   RG  R++   L ++ D AE
Sbjct: 182 RGVSETNIHFADDIKEKLAEFVRGDARMSLNYLEQLIDMAE 222


>gi|169832181|ref|YP_001718163.1| recombination factor protein RarA [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169639025|gb|ACA60531.1| AAA ATPase, central domain protein [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 435

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 62/116 (53%), Gaps = 10/116 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR L+EFTGQ       K+   A ++  + L  ++  GPPG GKTTLA +++R    N
Sbjct: 28  MRPRELDEFTGQEHIVGPGKLLRRAIES--DLLGSIILYGPPGSGKTTLAHIISRTTKSN 85

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAME 130
           FR+ S  V +   +L  ++    D       + +LF+DE H  +   +++L P +E
Sbjct: 86  FRTVSA-VSSGVKELRQVIEAAADSLKFHGRKTILFVDECHAFNKSQQDVLLPGIE 140


>gi|268678708|ref|YP_003303139.1| ATPase AAA [Sulfurospirillum deleyianum DSM 6946]
 gi|268616739|gb|ACZ11104.1| AAA ATPase central domain protein [Sulfurospirillum deleyianum DSM
           6946]
          Length = 396

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 62/116 (53%), Gaps = 6/116 (5%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
             RP+ +EE +GQ         F +  K+ +  + H LF GP G+GKTTLA++VA  L +
Sbjct: 8   FFRPKVIEELSGQKHLSGENSPFRKLLKSGS--MSHALFFGPAGVGKTTLARIVANTLQL 65

Query: 81  NFRSTSGPVIAKAGDLAALLTNLE---DRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
            F       I K  ++  +L+       + ++FIDEIHRLS   +E+L   ME+ +
Sbjct: 66  PFYELDATSI-KVEEIRKILSQHRGALQKPLIFIDEIHRLSKTQQEVLLLPMENHE 120


>gi|229918427|ref|YP_002887073.1| ATPase AAA [Exiguobacterium sp. AT1b]
 gi|229469856|gb|ACQ71628.1| AAA ATPase central domain protein [Exiguobacterium sp. AT1b]
          Length = 438

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/146 (32%), Positives = 77/146 (52%), Gaps = 14/146 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP TL++  GQ       K+   A +A  + L  ++  GPPG GKTTLA+V++      
Sbjct: 17  MRPETLDDVIGQRHIIGEGKLLRRAIEA--DRLGTIILYGPPGTGKTTLARVISNYTKAT 74

Query: 82  FRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F   +  V AK  +L  ++   E       +R +LF+DEIHR + + ++ L PA+E  +L
Sbjct: 75  FVQLNA-VTAKLDELRNVIREAESRYDYEDERTILFLDEIHRFNKLQQDALLPALESGKL 133

Query: 135 DLMVGEGPSARSVKIN---LSRFTLI 157
            +++G      S ++N   LSR T+ 
Sbjct: 134 -VLIGATTENPSFEVNAALLSRATVF 158


>gi|297616541|ref|YP_003701700.1| ATPase AAA [Syntrophothermus lipocalidus DSM 12680]
 gi|297144378|gb|ADI01135.1| AAA ATPase central domain protein [Syntrophothermus lipocalidus DSM
           12680]
          Length = 429

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 68/251 (27%), Positives = 108/251 (43%), Gaps = 53/251 (21%)

Query: 2   MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHV 57
           MD     S+N  Q  + ++  +RP+ L+E  GQ   V   + L+  IE      + L  +
Sbjct: 1   MDLFSYQSQNQPQAWSPLAFRMRPKDLDEIEGQAHLVGPGAPLRRMIER-----DQLHSM 55

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFR------STSGPVIAKAGDLAALLTNLEDRDVLFI 111
           +  GPPG GKTTL  ++A++   +F       +T+  +   AG+    L     R +LF+
Sbjct: 56  ILYGPPGTGKTTLGNIIAKKTRSHFEYLKAVSTTTADIRQLAGEAGQRLKFYGQRTILFL 115

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DEIHR +   ++ L P         MV EG            F LI ATT      NPL 
Sbjct: 116 DEIHRFNKAQQDALLP---------MVEEG-----------IFILIGATTE-----NPLY 150

Query: 172 D-RFGIPIRLNFYEIEDLKTIV------------QRGAKLTGLAVTDEAACEIAMRSRGT 218
           +    +  R + Y +E L                +RG    G+ +T+EA   + + ++G 
Sbjct: 151 EINSALLSRTHIYVLEPLDEQAIERILLRALNDKERGLGKYGIEITEEALKSVVIAAKGD 210

Query: 219 PRIAGRLLRRV 229
            R A  L+  +
Sbjct: 211 ARTALNLVENL 221


>gi|317476021|ref|ZP_07935274.1| ATPase [Bacteroides eggerthii 1_2_48FAA]
 gi|316907816|gb|EFV29517.1| ATPase [Bacteroides eggerthii 1_2_48FAA]
          Length = 372

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 76/147 (51%), Gaps = 18/147 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL+E+ GQ   V   + L+  I+A +     +   +  GPPG+GKTTLAQ++A +L
Sbjct: 8   LRPKTLDEYIGQKHLVGPGAVLRKMIDAGR-----ISSFILWGPPGVGKTTLAQIIANKL 62

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V +   D+  ++   +          +LFIDEIHR S   ++ L  A+E 
Sbjct: 63  ETPFYTLSA-VTSGVKDVRDVIDRAKSNRFFSQASPILFIDEIHRFSKSQQDSLLGAVEQ 121

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156
             + L+    E PS   ++  LSR  L
Sbjct: 122 GTVTLIGATTENPSFEVIRPLLSRCQL 148


>gi|89053112|ref|YP_508563.1| recombination factor protein RarA [Jannaschia sp. CCS1]
 gi|88862661|gb|ABD53538.1| Recombination protein MgsA [Jannaschia sp. CCS1]
          Length = 436

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 73/137 (53%), Gaps = 14/137 (10%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP TL+   GQ   + +  +L+V +++      AL  ++F GPPG+GKTT+A+++A E 
Sbjct: 25  LRPATLDAVIGQGHLLGSEGSLRVMLDSG-----ALSSLIFWGPPGVGKTTIARLLADET 79

Query: 79  GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
            +NF   S      P + K  + A +        +LF+DEIHR +   ++   P MED  
Sbjct: 80  ALNFVQISAIFTGMPDLRKVFEAAKIRRTNGQGTLLFVDEIHRFNKAQQDGFLPHMEDGT 139

Query: 134 LDLMVGEGPSARSVKIN 150
           + L+VG      S ++N
Sbjct: 140 I-LLVGATTENPSFELN 155


>gi|307247443|ref|ZP_07529489.1| Replication-associated recombination protein A [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306856059|gb|EFM88216.1| Replication-associated recombination protein A [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
          Length = 428

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 81/168 (48%), Gaps = 22/168 (13%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL E+ GQ         L+  IEA  + +     ++F GPPG GKTTLA+++A   
Sbjct: 1   MRPRTLAEYIGQAHLIGEGKPLRRAIEAGHSHS-----MIFWGPPGTGKTTLAEIIAHHF 55

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
                     TSG   I +A + A L      R +LF+DE+HR +   ++   P +ED  
Sbjct: 56  DAEVERLSAVTSGVKEIREAIERAKLNRQTGRRTLLFVDEVHRFNKSQQDAFLPHIEDGT 115

Query: 134 LDLMVGEGPSARSVKIN---LSRFTL-----IAATTRVGLLTNPLQDR 173
           + + +G      S ++N   LSR  +     + A     +LTN L D+
Sbjct: 116 I-IFIGATTENPSFELNNALLSRAKIYILKPLQAVEIAQVLTNALYDK 162


>gi|116251573|ref|YP_767411.1| recombination factor protein RarA [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115256221|emb|CAK07302.1| putative ATPase AAA family protein [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 438

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/138 (34%), Positives = 73/138 (52%), Gaps = 16/138 (11%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL + TGQ         LK  IE+      +L  ++F GPPG GKTT+A++++ E 
Sbjct: 24  LRPKTLADVTGQEHLTGEDGVLKRMIESG-----SLGSMIFWGPPGTGKTTVARLLSGEA 78

Query: 79  GVNFRSTSGPVIAKAGDL-----AALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMEDF 132
           G+ F   S  + +   DL      A L  ++ R  +LF+DEIHR +   ++   P MED 
Sbjct: 79  GLAFEQISA-IFSGVADLKKVFETARLRRMDGRQTLLFVDEIHRFNRAQQDSFLPVMEDG 137

Query: 133 QLDLMVGEGPSARSVKIN 150
            + ++VG      S ++N
Sbjct: 138 TV-ILVGATTENPSFELN 154


>gi|317181763|dbj|BAJ59547.1| recombination factor protein RarA [Helicobacter pylori F57]
          Length = 391

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/117 (36%), Positives = 62/117 (52%), Gaps = 12/117 (10%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           SLL P++LE+F GQ           +A +++     H  F GPPG+GKT+LAQ++A  L 
Sbjct: 5   SLLNPKSLEDFLGQEHLIGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIACMLE 62

Query: 80  ---VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAME 130
              + F +T      K   L   L N ++   + V+FIDE HRL+   +E L P ME
Sbjct: 63  RPILLFNATD----FKLEGLRLKLKNYQNTLLKPVIFIDETHRLNKTQQEFLLPIME 115


>gi|241204199|ref|YP_002975295.1| recombination factor protein RarA [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240858089|gb|ACS55756.1| AAA ATPase central domain protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 438

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/138 (34%), Positives = 73/138 (52%), Gaps = 16/138 (11%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL + TGQ         LK  IE+      +L  ++F GPPG GKTT+A++++ E 
Sbjct: 24  LRPKTLADVTGQEHLTGEDGVLKRMIESG-----SLGSMIFWGPPGTGKTTVARLLSGEA 78

Query: 79  GVNFRSTSGPVIAKAGDL-----AALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMEDF 132
           G+ F   S  + +   DL      A L  ++ R  +LF+DEIHR +   ++   P MED 
Sbjct: 79  GLAFEQISA-IFSGVADLKKVFETARLRRMDGRQTLLFVDEIHRFNRAQQDSFLPVMEDG 137

Query: 133 QLDLMVGEGPSARSVKIN 150
            + ++VG      S ++N
Sbjct: 138 TV-ILVGATTENPSFELN 154


>gi|284048963|ref|YP_003399302.1| AAA ATPase central domain protein [Acidaminococcus fermentans DSM
           20731]
 gi|283953184|gb|ADB47987.1| AAA ATPase central domain protein [Acidaminococcus fermentans DSM
           20731]
          Length = 439

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 85/169 (50%), Gaps = 18/169 (10%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPRTL+EF GQ +     K+     +   + +  ++F GPPG+GKTTLAQ++A     N
Sbjct: 19  LRPRTLDEFVGQEQLLGPGKILWNLIEE--DRISSMIFWGPPGVGKTTLAQIIAHTTRAN 76

Query: 82  FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F + S  V +   ++  ++   ++      R ++F+DEIHR +   ++   P +E   + 
Sbjct: 77  FINFSA-VTSGIKEIRTVMQRADENRRFGARTIVFVDEIHRFNRAQQDAFLPFVEKGAI- 134

Query: 136 LMVGEGPSARSVKIN---LSR---FTLIAATTRV--GLLTNPLQDRFGI 176
           +++G      S ++N   LSR   F L A   +   G+L   L D  G 
Sbjct: 135 ILIGATTENPSFEVNGALLSRCKVFVLKALDEKAIKGILKRALTDPRGF 183


>gi|327405355|ref|YP_004346193.1| AAA ATPase central domain-containing protein [Fluviicola taffensis
           DSM 16823]
 gi|327320863|gb|AEA45355.1| AAA ATPase central domain protein [Fluviicola taffensis DSM 16823]
          Length = 424

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/154 (33%), Positives = 79/154 (51%), Gaps = 21/154 (13%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP  L E+ GQ   +E    LK  IE+     + L  ++F GPPG+GKTTLA ++A++L
Sbjct: 9   MRPNELSEYIGQRHLLEENGALKKAIES-----KILPSIIFWGPPGVGKTTLANLLAKQL 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLSIIVEEILYPAMED 131
              F + S  + +   D+  ++   E +        VLFIDEIHR S   ++ L  A+E 
Sbjct: 64  NRPFYTLSA-ISSGVKDIREIIQKAESQGMFQTSGAVLFIDEIHRFSKSQQDSLLGAVEK 122

Query: 132 FQLDLM--VGEGPSARSVKINLSR---FTLIAAT 160
             + L+    E PS   +   LSR   +TL + T
Sbjct: 123 GTITLIGATTENPSFEVISALLSRCQVYTLESHT 156


>gi|78219446|gb|ABB38795.1| Recombination protein MgsA [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 375

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 95/219 (43%), Gaps = 33/219 (15%)

Query: 51  AEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLF 110
           A  L  +LF GPPG GK+T+A ++AR  G  +   S P   +AG L  L  +L    +L 
Sbjct: 3   ASRLPSLLFFGPPGCGKSTIALLLARNTGQKYIRISAP---EAG-LQQLRKSLAGVRILV 58

Query: 111 IDEIHRLSIIVEEILYPAMEDFQLDLMVG--EGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +DE+HR S   ++   P +E  ++ L+    E PS    +  LSR  +            
Sbjct: 59  LDELHRFSKAQQDFFLPVLESGEVTLLASTTENPSFSVTRQLLSRMHV------------ 106

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
                    +RL      DL T+ +RGA+  G A+ D+    +A  + G  R    L+  
Sbjct: 107 ---------LRLKPLAHSDLLTLARRGAEAQGAALKDDVCEMLATVAHGDARTLLNLVEY 157

Query: 229 VRDFAEVAHAKTITREIADAALLRLAI--DKMGFDQLDL 265
           V    E    +  T E   AAL  L +  DK G    ++
Sbjct: 158 VAGLPE----EKQTPEAVKAALPELVMRHDKDGDSHYEI 192


>gi|53804168|ref|YP_114220.1| recombination factor protein RarA [Methylococcus capsulatus str.
           Bath]
 gi|53757929|gb|AAU92220.1| ATPase, AAA family [Methylococcus capsulatus str. Bath]
          Length = 435

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 81/168 (48%), Gaps = 13/168 (7%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           +S + SQ  AD   LRPRTL+E+ GQ+      +   E+   R   L  ++F GPPG GK
Sbjct: 1   MSADFSQPLAD--RLRPRTLDEYIGQLHLIEPGRPLYESI--RRGRLHSMIFWGPPGTGK 56

Query: 68  TTLAQVVARELGVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           TTLA++VAR     F   S  +     I +A   A        R +LF+DE+HR +   +
Sbjct: 57  TTLARLVARHADAEFLPVSAVLSGVKEIREALARAVQFKAAGRRAILFVDEVHRFNKSQQ 116

Query: 123 EILYPAMEDFQLDLM--VGEGPS--ARSVKINLSRFTLIAATTRVGLL 166
           +     +ED  +  +    E PS    S  ++ +R  ++ A T   LL
Sbjct: 117 DAFLAHVEDGTVSFIGATTENPSFEVNSALLSRARVYVLKALTEADLL 164


>gi|307251991|ref|ZP_07533892.1| Replication-associated recombination protein A [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306860683|gb|EFM92695.1| Replication-associated recombination protein A [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 443

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 81/168 (48%), Gaps = 22/168 (13%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL E+ GQ         L+  IEA  + +     ++F GPPG GKTTLA+++A   
Sbjct: 16  MRPRTLAEYIGQAHLIGEGKPLRRAIEAGHSHS-----MIFWGPPGTGKTTLAEIIAHHF 70

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
                     TSG   I +A + A L      R +LF+DE+HR +   ++   P +ED  
Sbjct: 71  DAEVERLSAVTSGVKEIREAIERAKLNRQTGRRTLLFVDEVHRFNKSQQDAFLPHIEDGT 130

Query: 134 LDLMVGEGPSARSVKIN---LSRFTL-----IAATTRVGLLTNPLQDR 173
           + + +G      S ++N   LSR  +     + A     +LTN L D+
Sbjct: 131 I-IFIGATTENPSFELNNALLSRAKIYILKPLQAVEIAQVLTNALYDK 177


>gi|307256490|ref|ZP_07538271.1| Replication-associated recombination protein A [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306864900|gb|EFM96802.1| Replication-associated recombination protein A [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 428

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 81/168 (48%), Gaps = 22/168 (13%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL E+ GQ         L+  IEA  + +     ++F GPPG GKTTLA+++A   
Sbjct: 1   MRPRTLAEYIGQAHLIGEGKPLRRAIEAGHSHS-----MIFWGPPGTGKTTLAEIIAHHF 55

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
                     TSG   I +A + A L      R +LF+DE+HR +   ++   P +ED  
Sbjct: 56  DAEVERLSAVTSGVKEIREAIERAKLNRQTGRRTLLFVDEVHRFNKSQQDAFLPHIEDGT 115

Query: 134 LDLMVGEGPSARSVKIN---LSRFTL-----IAATTRVGLLTNPLQDR 173
           + + +G      S ++N   LSR  +     + A     +LTN L D+
Sbjct: 116 I-IFIGATTENPSFELNNALLSRAKIYILKPLQAVEIAQVLTNALYDK 162


>gi|191636983|ref|YP_001986149.1| recombination factor protein RarA [Lactobacillus casei BL23]
 gi|190711285|emb|CAQ65291.1| Chromosome segregation helicase (Putative) [Lactobacillus casei
           BL23]
 gi|327381009|gb|AEA52485.1| hypothetical protein LC2W_0149 [Lactobacillus casei LC2W]
 gi|327384185|gb|AEA55659.1| hypothetical protein LCBD_0159 [Lactobacillus casei BD-II]
          Length = 448

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 72/264 (27%), Positives = 114/264 (43%), Gaps = 43/264 (16%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           S +RP+TL+EF GQ       KV   +     + +  ++F GPPG+GKTTLA+++AR   
Sbjct: 16  SRMRPQTLDEFVGQTHLLGKDKVL--SNLIEHDEISSMIFWGPPGVGKTTLARIIARRTK 73

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             F + S  V +   ++  ++   E       + ++F+DEIHR +   ++   P +E   
Sbjct: 74  AQFVTFSA-VTSGIKEIKQVMKEAEQNRELGQKTIVFVDEIHRFNKAQQDAFLPYVERGS 132

Query: 134 LDLMVGEGPSARSVKIN---LSR---FTLIAATTR--VGLLTNPLQDRFGIPIRLNFYEI 185
           + +++G      S ++N   LSR   F L   T+   V LL   L+D             
Sbjct: 133 I-ILIGATTENPSFEVNAALLSRTRVFVLHGLTSAELVDLLQRALKD------------- 178

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
                   RG  L  + +  +   +IA  + G  RIA   L      AE      +T   
Sbjct: 179 -------PRGYGLQKVKIGKKLLAQIADFANGDARIALNTLEMAVTNAETK-GGVVTVTQ 230

Query: 246 ADAALL----RLAIDKMGFDQLDL 265
           AD A L     L  DK G +  +L
Sbjct: 231 ADVAQLLTKKALLYDKNGEEHYNL 254


>gi|307263100|ref|ZP_07544722.1| Replication-associated recombination protein A [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|306871726|gb|EFN03448.1| Replication-associated recombination protein A [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 443

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 81/168 (48%), Gaps = 22/168 (13%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL E+ GQ         L+  IEA  + +     ++F GPPG GKTTLA+++A   
Sbjct: 16  MRPRTLAEYIGQAHLIGEGKPLRRAIEAGHSHS-----MIFWGPPGTGKTTLAEIIAHHF 70

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
                     TSG   I +A + A L      R +LF+DE+HR +   ++   P +ED  
Sbjct: 71  DAEVERLSAVTSGVKEIREAIERAKLNRQTGRRTLLFVDEVHRFNKSQQDAFLPHIEDGT 130

Query: 134 LDLMVGEGPSARSVKIN---LSRFTL-----IAATTRVGLLTNPLQDR 173
           + + +G      S ++N   LSR  +     + A     +LTN L D+
Sbjct: 131 I-IFIGATTENPSFELNNALLSRAKIYILKPLQAVEIAQVLTNALYDK 177


>gi|294673569|ref|YP_003574185.1| AAA family ATPase [Prevotella ruminicola 23]
 gi|294473348|gb|ADE82737.1| ATPase, AAA family [Prevotella ruminicola 23]
          Length = 424

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/147 (34%), Positives = 76/147 (51%), Gaps = 18/147 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPRTL+E+ GQ   V   + L+  I+A +     +   +  GPPG+GKTTLAQ++A +L
Sbjct: 9   LRPRTLDEYIGQEHLVGEGAVLRKMIDAGR-----IPSFILWGPPGVGKTTLAQIIAHKL 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V +   D+  ++          E   +LFIDEIHR S   ++ L  A+E 
Sbjct: 64  ETPFYTLSA-VTSGVKDVREVIERAQKGRFFNEASPILFIDEIHRFSKSQQDSLLGAVEK 122

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156
             + L+    E PS   ++  LSR  L
Sbjct: 123 GIVTLIGATTENPSFEVIRPLLSRCQL 149


>gi|190149782|ref|YP_001968307.1| hypothetical protein APP7_0513 [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|189914913|gb|ACE61165.1| hypothetical protein APP7_0513 [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
          Length = 446

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 81/168 (48%), Gaps = 22/168 (13%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL E+ GQ         L+  IEA  + +     ++F GPPG GKTTLA+++A   
Sbjct: 19  MRPRTLAEYIGQAHLIGEGKPLRRAIEAGHSHS-----MIFWGPPGTGKTTLAEIIAHHF 73

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
                     TSG   I +A + A L      R +LF+DE+HR +   ++   P +ED  
Sbjct: 74  DAEVERLSAVTSGVKEIREAIERAKLNRQTGRRTLLFVDEVHRFNKSQQDAFLPHIEDGT 133

Query: 134 LDLMVGEGPSARSVKIN---LSRFTL-----IAATTRVGLLTNPLQDR 173
           + + +G      S ++N   LSR  +     + A     +LTN L D+
Sbjct: 134 I-IFIGATTENPSFELNNALLSRAKIYILKPLQAVEIAQVLTNALYDK 180


>gi|120403620|ref|YP_953449.1| recombination factor protein RarA [Mycobacterium vanbaalenii PYR-1]
 gi|119956438|gb|ABM13443.1| Recombination protein MgsA [Mycobacterium vanbaalenii PYR-1]
          Length = 429

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 123/261 (47%), Gaps = 48/261 (18%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP +L+E  GQ   ++  S L+  IE + A +     V+  GPPG GKTTLA ++++  
Sbjct: 17  MRPASLDEVVGQGHLLKPNSPLRRLIEGSGAAS-----VILYGPPGTGKTTLASMISQAT 71

Query: 79  GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           G  F + S        +    D+A   +   ++ VLFIDE+HR S   ++ L  A+E+  
Sbjct: 72  GRRFEALSALAAGVKEVRAVIDVARQASMRGEQTVLFIDEVHRFSKTQQDALLAAVENRV 131

Query: 134 LDLMVG--EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + L+    E PS          F+++A          PL  R  I ++L     ED+ T+
Sbjct: 132 VLLVAATTENPS----------FSVVA----------PLLSRSLI-LQLQPLTPEDVTTV 170

Query: 192 VQRGAK----LTG-LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           ++R  +    L G +AVTDEA  ++   S G  R A   L    +  E      +T E+ 
Sbjct: 171 IRRAIEDPRGLGGKVAVTDEAVDQLVQLSAGDARRALTALEVASESGE-----EVTVEVI 225

Query: 247 DAALLRLAI--DKMGFDQLDL 265
           + +L + A+  D+ G    D+
Sbjct: 226 EQSLDKAAVRYDRDGDQHYDV 246


>gi|319892681|ref|YP_004149556.1| Uncharacterized ATPase (AAA family) associated with cysteine
           desulfurase [Staphylococcus pseudintermedius HKU10-03]
 gi|317162377|gb|ADV05920.1| Uncharacterized ATPase (AAA family) associated with cysteine
           desulfurase [Staphylococcus pseudintermedius HKU10-03]
          Length = 423

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 96/205 (46%), Gaps = 17/205 (8%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           S +RPR ++E  GQ        +      A+   L  ++F GPPG+GKT++AQ +A    
Sbjct: 8   SRMRPRNIDEVIGQQHLVGETGIIRRMVNAKR--LSSMIFYGPPGIGKTSIAQAIAGSTA 65

Query: 80  VNFRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
             FR  +  V     D+  ++    +  + +L +DEIHRL    ++ L P +E+ ++ ++
Sbjct: 66  FKFRQLNA-VTNTKKDMQMIVDEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKI-VL 123

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
           +G   S     IN       A  +R  +      D+  I + LN + +ED     +RG K
Sbjct: 124 IGATTSNPYHAIN------PAIRSRAQIFELFPLDKNDIKVALN-HALED----EERGLK 172

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIA 222
               ++ D+A    A +S+G  R A
Sbjct: 173 QFDASIDDDAFEYFATQSQGDVRSA 197


>gi|303249802|ref|ZP_07336006.1| recombination factor protein RarA [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|302651369|gb|EFL81521.1| recombination factor protein RarA [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 446

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 81/168 (48%), Gaps = 22/168 (13%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL E+ GQ         L+  IEA  + +     ++F GPPG GKTTLA+++A   
Sbjct: 19  MRPRTLAEYIGQAHLIGEGKPLRRAIEAGHSHS-----MIFWGPPGTGKTTLAEIIAHHF 73

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
                     TSG   I +A + A L      R +LF+DE+HR +   ++   P +ED  
Sbjct: 74  DAEVERLSAVTSGVKEIREAIERAKLNRQTGRRTLLFVDEVHRFNKSQQDAFLPHIEDGT 133

Query: 134 LDLMVGEGPSARSVKIN---LSRFTL-----IAATTRVGLLTNPLQDR 173
           + + +G      S ++N   LSR  +     + A     +LTN L D+
Sbjct: 134 I-IFIGATTENPSFELNNALLSRAKIYILKPLQAVEIAQVLTNALYDK 180


>gi|227533349|ref|ZP_03963398.1| recombination ATPase [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|227189020|gb|EEI69087.1| recombination ATPase [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
          Length = 448

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 72/264 (27%), Positives = 114/264 (43%), Gaps = 43/264 (16%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           S +RP+TL+EF GQ       KV     +   + +  ++F GPPG+GKTTLA+++AR   
Sbjct: 16  SRMRPQTLDEFVGQTHLLGKDKVLSNLIEH--DEISSMIFWGPPGVGKTTLARIIARRTK 73

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             F + S  V +   ++  ++   E       + ++F+DEIHR +   ++   P +E   
Sbjct: 74  AQFVTFSA-VTSGIKEIKQVMKEAEQNRELGQKTIVFVDEIHRFNKAQQDAFLPYVERGS 132

Query: 134 LDLMVGEGPSARSVKIN---LSR---FTLIAATTR--VGLLTNPLQDRFGIPIRLNFYEI 185
           + +++G      S ++N   LSR   F L   T+   V LL   L+D             
Sbjct: 133 I-ILIGATTENPSFEVNAALLSRTRVFVLHGLTSAELVDLLQRALKD------------- 178

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
                   RG  L  + +  +   +IA  + G  RIA   L      AE      +T   
Sbjct: 179 -------PRGYGLQKVKIGKKLLAQIADFANGDARIALNTLEMAVTNAETK-GGVVTVTQ 230

Query: 246 ADAALL----RLAIDKMGFDQLDL 265
           AD A L     L  DK G +  +L
Sbjct: 231 ADVAQLLTKKALLYDKNGEEHYNL 254


>gi|89073399|ref|ZP_01159923.1| putative ATPase protein [Photobacterium sp. SKA34]
 gi|89050886|gb|EAR56360.1| putative ATPase protein [Photobacterium sp. SKA34]
          Length = 428

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 97/221 (43%), Gaps = 25/221 (11%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRT+EE+ GQ       K    A +A    L  ++  GPPG GKTTLA+V A      
Sbjct: 1   MRPRTVEEYIGQQHILGQGKPLRRALEA--GQLHSMILWGPPGTGKTTLAEVAAHYANAE 58

Query: 82  FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
               S  V +   D+ A +    D      R +LF+DE+HR +   ++   P +ED  + 
Sbjct: 59  VERVSA-VTSGIKDIRAAIDKARDNKMAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVT 117

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
            +    E PS       LSR       +RV  L + L+D   + +      IE      +
Sbjct: 118 FIGATTENPSFELNNALLSR-------SRVYKLKS-LEDDEILQV------IEQALMDKE 163

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
           RG   T L   D+   ++A   RG  R++   L ++ D +E
Sbjct: 164 RGVTETNLHFADDIKDKLAEFVRGDARMSLNYLEQLIDMSE 204


>gi|46580096|ref|YP_010904.1| recombination factor protein RarA [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120602446|ref|YP_966846.1| recombination factor protein RarA [Desulfovibrio vulgaris DP4]
 gi|46449512|gb|AAS96163.1| ATPase, AAA family [Desulfovibrio vulgaris str. Hildenborough]
 gi|120562675|gb|ABM28419.1| Recombination protein MgsA [Desulfovibrio vulgaris DP4]
 gi|311233905|gb|ADP86759.1| AAA ATPase central domain protein [Desulfovibrio vulgaris RCH1]
          Length = 411

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 65/138 (47%), Gaps = 11/138 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP  LE F GQ      ++  +     RA  L  +L  GPPG GK+TLA ++A+    N
Sbjct: 11  LRPTVLEGFVGQTHLTQRIEALL-----RANRLPSLLLFGPPGCGKSTLALLLAKARSAN 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME--DFQLDLMVG 139
               S P   +AG L  L   L   D+L +DE+HR S   ++   P +E  D  +     
Sbjct: 66  VLRLSAP---EAG-LQHLRKQLHGVDILVLDELHRFSKAQQDFFLPLLESGDITMLATTT 121

Query: 140 EGPSARSVKINLSRFTLI 157
           E PS    +  LSR  ++
Sbjct: 122 ENPSFSVTRQLLSRLHVL 139


>gi|317968012|ref|ZP_07969402.1| recombination factor protein RarA/unknown domain fusion protein
           [Synechococcus sp. CB0205]
          Length = 727

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 66/117 (56%), Gaps = 10/117 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPR+L++F GQ E     ++   A  A  + + +++F GPPG+GKTTLA+++A     +
Sbjct: 23  LRPRSLDDFQGQEEILGPGRLLRRAINA--DRVGNLIFYGPPGVGKTTLARIIAATTRAH 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131
           F S +  V+A   DL   +   +        R +LFIDE+HR +   ++ L P +E+
Sbjct: 81  FSSLNA-VLAGVKDLRHEVDEAKRRLDQHGLRSLLFIDEVHRFNSAQQDALLPWVEN 136


>gi|289578776|ref|YP_003477403.1| ATPase AAA [Thermoanaerobacter italicus Ab9]
 gi|289528489|gb|ADD02841.1| AAA ATPase central domain protein [Thermoanaerobacter italicus Ab9]
          Length = 443

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 116/260 (44%), Gaps = 38/260 (14%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+TL+EF GQ       K+  E  +   + +  ++  GPPG+GKTTLA ++A      
Sbjct: 23  MRPKTLDEFVGQEHLLGKGKLLRELIEK--DNITSMILWGPPGVGKTTLAMIIANMTNSK 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F + S  V++   ++  ++   E       R V+FIDEIHR +   ++   P +E   + 
Sbjct: 81  FVTFSA-VLSGIKEIKEIMAKAELDAMHGTRTVVFIDEIHRFNKAQQDAFLPHVEKGNII 139

Query: 136 LM--VGEGPS--ARSVKINLSRFTLIAATTR---VGLLTNPLQDRFGIPIRLNFYEIEDL 188
           L+    E PS    S  ++ S+  ++   T+   + LL   L+D                
Sbjct: 140 LIGATTENPSFEVNSALLSRSKVFVMKPLTKEDLLILLKRALKDE--------------- 184

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE--IA 246
               Q G  +  + +T+E    IA+ + G  R+A   L      A+V   + I  +  +A
Sbjct: 185 ----QNGLGMYKIGITEEQLKRIALFANGDARVALNTLEIAVMGAKVTEGRRIVTDDILA 240

Query: 247 DAALLR-LAIDKMGFDQLDL 265
           DA   + L  DK G +  +L
Sbjct: 241 DAMQKKTLLYDKQGEEHYNL 260


>gi|228470835|ref|ZP_04055683.1| ATPase, AAA family [Porphyromonas uenonis 60-3]
 gi|228307508|gb|EEK16513.1| ATPase, AAA family [Porphyromonas uenonis 60-3]
          Length = 436

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 78/147 (53%), Gaps = 20/147 (13%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP+TLEE+ GQ   V A + L+V +E        +  ++  GPPG+GKTTLA+++++ +
Sbjct: 12  MRPKTLEEYVGQSHLVGANAPLRVMLERGH-----IPSMILWGPPGVGKTTLARLLSQLM 66

Query: 79  GVNFRSTSG---------PVIAKAGDL-AALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
                S S            + +A D  A L +  + R +LFIDEIHR S   ++ L  A
Sbjct: 67  QCRCYSLSAVGSGVADVRKTLQEAKDAQAGLFSQHQGRPILFIDEIHRFSKSQQDSLLAA 126

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSR 153
           +E   + L+    E PS + ++  LSR
Sbjct: 127 VEQGVVTLIGATTENPSFQVIRPLLSR 153


>gi|83854945|ref|ZP_00948475.1| ATPase, AAA family protein [Sulfitobacter sp. NAS-14.1]
 gi|83842788|gb|EAP81955.1| ATPase, AAA family protein [Sulfitobacter sp. NAS-14.1]
          Length = 435

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 72/137 (52%), Gaps = 14/137 (10%)

Query: 22  LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPR+L E  GQ +     + L V +++      +L  ++F GPPG+GKTT+A+++A E 
Sbjct: 23  LRPRSLGEVIGQSQVLGPDAPLTVMLQSG-----SLGSLIFWGPPGVGKTTIARLLADET 77

Query: 79  GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
            ++F   S      P + K  D A +        +LF+DEIHR +   ++   P MED  
Sbjct: 78  DLHFVQISAIFSGVPELRKVFDAAKIRRQNGQGTLLFVDEIHRFNKAQQDGFLPHMEDGT 137

Query: 134 LDLMVGEGPSARSVKIN 150
           + L+VG      S ++N
Sbjct: 138 I-LLVGATTENPSFELN 153


>gi|307249662|ref|ZP_07531648.1| Replication-associated recombination protein A [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306858360|gb|EFM90430.1| Replication-associated recombination protein A [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
          Length = 446

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 81/168 (48%), Gaps = 22/168 (13%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL E+ GQ         L+  IEA  + +     ++F GPPG GKTTLA+++A   
Sbjct: 19  MRPRTLAEYIGQAHLIGEGKPLRRAIEAGHSHS-----MIFWGPPGTGKTTLAEIIAHHF 73

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
                     TSG   I +A + A L      R +LF+DE+HR +   ++   P +ED  
Sbjct: 74  DAEVERLSAVTSGVKEIREAIERAKLNRQTGRRTLLFVDEVHRFNKSQQDAFLPHIEDGT 133

Query: 134 LDLMVGEGPSARSVKIN---LSRFTL-----IAATTRVGLLTNPLQDR 173
           + + +G      S ++N   LSR  +     + A     +LTN L D+
Sbjct: 134 I-IFIGATTENPSFELNNALLSRAKIYILKPLQAVEIAQVLTNALYDK 180


>gi|303252682|ref|ZP_07338845.1| recombination factor protein RarA [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|302648650|gb|EFL78843.1| recombination factor protein RarA [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
          Length = 446

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 81/168 (48%), Gaps = 22/168 (13%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL E+ GQ         L+  IEA  + +     ++F GPPG GKTTLA+++A   
Sbjct: 19  MRPRTLAEYIGQAHLIGEGKPLRRAIEAGHSHS-----MIFWGPPGTGKTTLAEIIAHHF 73

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
                     TSG   I +A + A L      R +LF+DE+HR +   ++   P +ED  
Sbjct: 74  DAEVERLSAVTSGVKEIREAIERAKLNRQTGRRTLLFVDEVHRFNKSQQDAFLPHIEDGT 133

Query: 134 LDLMVGEGPSARSVKIN---LSRFTL-----IAATTRVGLLTNPLQDR 173
           + + +G      S ++N   LSR  +     + A     +LTN L D+
Sbjct: 134 I-IFIGATTENPSFELNNALLSRAKIYILKPLQAVEIAQVLTNALYDK 180


>gi|237736637|ref|ZP_04567118.1| ATPase [Fusobacterium mortiferum ATCC 9817]
 gi|229420499|gb|EEO35546.1| ATPase [Fusobacterium mortiferum ATCC 9817]
          Length = 410

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 99/223 (44%), Gaps = 40/223 (17%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP++LE+F GQ +       L+  IE      + + + +F GPPG GK++L +++++ +
Sbjct: 20  LRPQSLEDFIGQEKLLGKGGILRKLIER-----QNISNSIFYGPPGCGKSSLGEIISKSI 74

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAMED 131
             NF  T     A   DL  ++   +        + +LF+DEIHR + + ++ L    E+
Sbjct: 75  NSNFE-TLNATTASLNDLREVVERAKKSIEFYGKKTILFLDEIHRFNKMQQDALLSHCEN 133

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTR--VGLLTNPLQDRFGIPIRLNFYEIEDLK 189
                                  TLI ATT      L N L  R  I       E +D++
Sbjct: 134 --------------------GTITLIGATTENPYYSLNNALLSRVMI-FEFKALERKDIE 172

Query: 190 TIVQRG-AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            IV+RG  KL    V+DE    I   S+G  RIA   L   ++
Sbjct: 173 KIVRRGIEKLELKDVSDEIIECILDISQGDSRIALNYLELYKN 215


>gi|227486699|ref|ZP_03917015.1| crossover junction endodeoxyribonuclease ATPase [Anaerococcus
           lactolyticus ATCC 51172]
 gi|227235287|gb|EEI85302.1| crossover junction endodeoxyribonuclease ATPase [Anaerococcus
           lactolyticus ATCC 51172]
          Length = 439

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 74/142 (52%), Gaps = 14/142 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+T++ + GQ       K+     KA  + +  ++F GPPG+GKTTLA++++    + 
Sbjct: 22  LRPKTIDAYIGQDHLVGEGKIIRRMIKA--DRIYSMIFYGPPGVGKTTLAKIISNSTHMA 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F   S  V +  GDL   +   +D       + +LFIDEIHR +   ++ L P +ED  +
Sbjct: 80  FEEVSA-VASGIGDLKEKIQIAKDNLAYENKKTILFIDEIHRFNKSQQDYLLPFVEDATI 138

Query: 135 DLMVG---EGPSARSVKINLSR 153
            +++G   E P     K  +SR
Sbjct: 139 -ILIGATTENPYFEVNKALISR 159


>gi|312127885|ref|YP_003992759.1| AAA ATPase central domain-containing protein [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777904|gb|ADQ07390.1| AAA ATPase central domain protein [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 441

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 103/222 (46%), Gaps = 36/222 (16%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ LEE  GQ    S  K      K   + L  ++  GPPG GKTT+A V+A   G  
Sbjct: 22  LRPKRLEEIIGQEHILSPGKPLYNLIKN--DRLTSIILYGPPGTGKTTIAHVIANATGKT 79

Query: 82  FRSTSGPVIAKAGDLAALL-------TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F++ +   IA   D+  ++       +    + +LFIDEIHR + + ++ L P++E+  +
Sbjct: 80  FKTINA-TIAGVNDIKKIIEEAKIEFSQTGRKTILFIDEIHRFNKLQQDALLPSVEE-GI 137

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
            +++G        ++N +   L++ +    L   PL++             ED+  I++R
Sbjct: 138 IILIGATTENPFYEVNKA---LVSRSLVFELF--PLKE-------------EDILKIIER 179

Query: 195 GA--KLTGLA-----VTDEAACEIAMRSRGTPRIAGRLLRRV 229
               K  GL      + D+A   IA  S G  R+A  +L  V
Sbjct: 180 AISDKENGLGELNIQIEDDAKKLIAKLSGGDARVALNILEAV 221


>gi|227522807|ref|ZP_03952856.1| recombination ATPase [Lactobacillus hilgardii ATCC 8290]
 gi|227090008|gb|EEI25320.1| recombination ATPase [Lactobacillus hilgardii ATCC 8290]
          Length = 441

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 70/130 (53%), Gaps = 11/130 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+TL +F GQ +     KV  E  ++  + L  ++F GPPG GKTTLA+++A++    
Sbjct: 21  VRPQTLADFAGQQQLLGKGKVLREIIES--DQLPSMIFWGPPGSGKTTLAEIIAKKTKAK 78

Query: 82  FRSTSGPVIAKAGDLAALLT------NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F + S  V +   D+  L+       N+  + ++F+DEIHR +   ++   P +E   + 
Sbjct: 79  FVTFSA-VTSGIRDIRKLMKDAEANRNMGGKTIVFVDEIHRFNKAQQDAFLPFVEKGSIT 137

Query: 136 LM--VGEGPS 143
           L+    E PS
Sbjct: 138 LIGATTENPS 147


>gi|312793248|ref|YP_004026171.1| AAA ATPase central domain-containing protein [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312180388|gb|ADQ40558.1| AAA ATPase central domain protein [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 441

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 61/117 (52%), Gaps = 10/117 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ LEE  GQ    S  K      K   + L  ++  GPPG GKTT+A V+A   G  
Sbjct: 22  LRPKRLEEIVGQEHILSPGKPLYNLIKN--DRLTSIILYGPPGTGKTTIAHVIANATGKT 79

Query: 82  FRSTSGPVIAKAGDLAALL-------TNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
           F++ +   IA   D+  ++       +    + +LFIDEIHR + + ++ L P++E+
Sbjct: 80  FKTINA-TIAGVNDIKKIIEEAKIEFSQTGRKTILFIDEIHRFNKLQQDALLPSVEE 135


>gi|227509636|ref|ZP_03939685.1| recombination ATPase [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227190998|gb|EEI71065.1| recombination ATPase [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 441

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 71/130 (54%), Gaps = 11/130 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+TL +F GQ       KV  E  ++  + L  ++F GPPG GKTTLA+++A++    
Sbjct: 21  VRPQTLADFAGQQHLLGKGKVLREIIES--DQLPSMIFWGPPGSGKTTLAEIIAKKTKAK 78

Query: 82  FRSTSGPVIAKAGDLAALLTNLE-DRD-----VLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F + S  V +   D+  L+ + E +RD     ++F+DEIHR +   ++   P +E   + 
Sbjct: 79  FVTFSA-VTSGIRDIRKLMKDAEANRDMGGKTIVFVDEIHRFNKAQQDAFLPFVEKGSIT 137

Query: 136 LM--VGEGPS 143
           L+    E PS
Sbjct: 138 LIGATTENPS 147


>gi|218130825|ref|ZP_03459629.1| hypothetical protein BACEGG_02420 [Bacteroides eggerthii DSM 20697]
 gi|217987169|gb|EEC53500.1| hypothetical protein BACEGG_02420 [Bacteroides eggerthii DSM 20697]
          Length = 423

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 76/147 (51%), Gaps = 18/147 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL+E+ GQ   V   + L+  I+A +     +   +  GPPG+GKTTLAQ++A +L
Sbjct: 8   LRPKTLDEYIGQKHLVGPGAVLRKMIDAGR-----ISSFILWGPPGVGKTTLAQIIANKL 62

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V +   D+  ++   +          +LFIDEIHR S   ++ L  A+E 
Sbjct: 63  ETPFYTLSA-VTSGVKDVRDVIDRAKSNRFFSQASPILFIDEIHRFSKSQQDSLLGAVEQ 121

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156
             + L+    E PS   ++  LSR  L
Sbjct: 122 GTVTLIGATTENPSFEVIRPLLSRCQL 148


>gi|329955240|ref|ZP_08296197.1| ATPase, AAA family [Bacteroides clarus YIT 12056]
 gi|328526239|gb|EGF53258.1| ATPase, AAA family [Bacteroides clarus YIT 12056]
          Length = 431

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 76/147 (51%), Gaps = 18/147 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL+E+ GQ   V   + L+  I+A +     +   +  GPPG+GKTTLAQ++A +L
Sbjct: 8   LRPKTLDEYIGQKHLVGQGAVLRKMIDAGR-----ISSFILWGPPGVGKTTLAQIIANKL 62

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V +   D+  ++   +          +LFIDEIHR S   ++ L  A+E 
Sbjct: 63  ETPFYTLSA-VTSGVKDVRDVIDRAKSNRFFSQASPILFIDEIHRFSKSQQDSLLGAVEQ 121

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156
             + L+    E PS   ++  LSR  L
Sbjct: 122 GTVTLIGATTENPSFEVIRPLLSRCQL 148


>gi|227512582|ref|ZP_03942631.1| recombination ATPase [Lactobacillus buchneri ATCC 11577]
 gi|227084197|gb|EEI19509.1| recombination ATPase [Lactobacillus buchneri ATCC 11577]
          Length = 441

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 70/130 (53%), Gaps = 11/130 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+TL +F GQ +     KV  E  ++  + L  ++F GPPG GKTTLA+++A++    
Sbjct: 21  VRPQTLADFAGQQQLLGKGKVLREIIES--DQLPSMIFWGPPGSGKTTLAEIIAKKTKAK 78

Query: 82  FRSTSGPVIAKAGDLAALLT------NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F + S  V +   D+  L+       N+  + ++F+DEIHR +   ++   P +E   + 
Sbjct: 79  FVTFSA-VTSGIRDIRKLMKDAEANRNMGGKTIVFVDEIHRFNKAQQDAFLPFVEKGSIT 137

Query: 136 LM--VGEGPS 143
           L+    E PS
Sbjct: 138 LIGATTENPS 147


>gi|312876940|ref|ZP_07736915.1| AAA ATPase central domain protein [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796255|gb|EFR12609.1| AAA ATPase central domain protein [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 441

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 61/117 (52%), Gaps = 10/117 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ LEE  GQ    S  K      K   + L  ++  GPPG GKTT+A V+A   G  
Sbjct: 22  LRPKRLEEIVGQEHILSPGKPLYNLIKN--DRLTSIILYGPPGTGKTTIAHVIANATGKT 79

Query: 82  FRSTSGPVIAKAGDLAALL-------TNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
           F++ +   IA   D+  ++       +    + +LFIDEIHR + + ++ L P++E+
Sbjct: 80  FKTINA-TIAGVNDIKKIIEEAKIEFSQTGRKTILFIDEIHRFNKLQQDALLPSVEE 135


>gi|167762677|ref|ZP_02434804.1| hypothetical protein BACSTE_01035 [Bacteroides stercoris ATCC
           43183]
 gi|167699017|gb|EDS15596.1| hypothetical protein BACSTE_01035 [Bacteroides stercoris ATCC
           43183]
          Length = 422

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 76/147 (51%), Gaps = 18/147 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL+E+ GQ   V   + L+  I+A +     +   +  GPPG+GKTTLAQ++A +L
Sbjct: 8   LRPKTLDEYIGQKHLVGPGAVLRKMIDAGR-----ISSFILWGPPGVGKTTLAQIIANKL 62

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V +   D+  ++   +          +LFIDEIHR S   ++ L  A+E 
Sbjct: 63  ETPFYTLSA-VTSGVKDVRDVIDRAKSNRFFSQASPILFIDEIHRFSKSQQDSLLGAVEQ 121

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156
             + L+    E PS   ++  LSR  L
Sbjct: 122 GTVTLIGATTENPSFEVIRPLLSRCQL 148


>gi|147677387|ref|YP_001211602.1| recombination factor protein RarA [Pelotomaculum thermopropionicum
           SI]
 gi|146273484|dbj|BAF59233.1| ATPase [Pelotomaculum thermopropionicum SI]
          Length = 440

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 75/145 (51%), Gaps = 17/145 (11%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVG 61
           E  + +N++      + +RPRTL+EF  Q         L+  IE      + +   +F G
Sbjct: 5   EQAMKKNLAMAAPLATRMRPRTLDEFEEQHGVAGPGTLLRRLIEE-----DNISSAIFFG 59

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEI 114
           PPG GKTTLA ++A     +F + +  V+A  GD+  ++    +R        +LFIDEI
Sbjct: 60  PPGTGKTTLASIIAGMTRAHFETINA-VMAGVGDIKRVVEESRERLALYNQKTILFIDEI 118

Query: 115 HRLSIIVEEILYPAMEDFQLDLMVG 139
           HR +   ++ L P +E+ Q+ +M+G
Sbjct: 119 HRFNRTQQDALLPFVENGQI-IMIG 142


>gi|294790942|ref|ZP_06756100.1| ATPase, AAA family [Scardovia inopinata F0304]
 gi|294458839|gb|EFG27192.1| ATPase, AAA family [Scardovia inopinata F0304]
          Length = 506

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 73/152 (48%), Gaps = 13/152 (8%)

Query: 22  LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP  +E+  GQ +A    S L+   +       A   ++  GPPG+GKTTLA + AR+ 
Sbjct: 29  MRPTRVEDVVGQGQALQPGSPLRRVAQPPAHSRTAPTSIILFGPPGVGKTTLAYIAARQS 88

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131
           G  F   S  V +   DL  +L    +R        VLFIDE+HR S   ++ L P++E+
Sbjct: 89  GRAFEELSA-VTSGVKDLRQVLQRAHERLVSQGKETVLFIDEVHRFSKSQQDALLPSVEN 147

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATT 161
             +  +    E PS   +   LSR  ++   T
Sbjct: 148 RDITFIGATTENPSFSIISPLLSRSVVVKLET 179


>gi|116629635|ref|YP_814807.1| recombination factor protein RarA [Lactobacillus gasseri ATCC
           33323]
 gi|116095217|gb|ABJ60369.1| Helicase subunit of the Holliday junction resolvase related ATPase
           [Lactobacillus gasseri ATCC 33323]
          Length = 429

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 3/119 (2%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           L+RP+ L +F GQ +     +   +  K        +L  GPPG GKT+LAQ++ARE   
Sbjct: 13  LIRPKDLSQFVGQKDLIEEGRPLYQIIKKHVPI--SLLLWGPPGTGKTSLAQIIAREFDY 70

Query: 81  NFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
              + +  +  KA     + T      VL IDEIHR++  +++ L P +E+ ++ L++G
Sbjct: 71  PLATFNASIDNKAKLTQIINTYPYQSFVLLIDEIHRMTTTLQDFLLPYLENGRI-LLIG 128


>gi|238854285|ref|ZP_04644629.1| recombination factor protein RarA [Lactobacillus gasseri 202-4]
 gi|282851165|ref|ZP_06260532.1| ATPase, AAA family [Lactobacillus gasseri 224-1]
 gi|238833096|gb|EEQ25389.1| recombination factor protein RarA [Lactobacillus gasseri 202-4]
 gi|282557697|gb|EFB63292.1| ATPase, AAA family [Lactobacillus gasseri 224-1]
          Length = 426

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 3/119 (2%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           L+RP+ L +F GQ +     +   +  K        +L  GPPG GKT+LAQ++ARE   
Sbjct: 10  LIRPKDLSQFVGQKDLIEEGRPLYQIIKKHVPI--SLLLWGPPGTGKTSLAQIIAREFDY 67

Query: 81  NFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
              + +  +  KA     + T      VL IDEIHR++  +++ L P +E+ ++ L++G
Sbjct: 68  PLATFNASIDNKAKLTQIINTYPYQSFVLLIDEIHRMTTTLQDFLLPYLENGRI-LLIG 125


>gi|255692090|ref|ZP_05415765.1| replication-associated recombination protein A [Bacteroides
           finegoldii DSM 17565]
 gi|260622242|gb|EEX45113.1| replication-associated recombination protein A [Bacteroides
           finegoldii DSM 17565]
          Length = 425

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 77/147 (52%), Gaps = 18/147 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL+E+ GQ   V   + L+  I+A +     +   +  GPPG+GKTTLAQ++A +L
Sbjct: 8   LRPKTLDEYIGQKHLVGPGAILRKMIDAGR-----ISSFILWGPPGVGKTTLAQIIANKL 62

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V +   D+  ++          +   +LFIDEIHR S   ++ L  A+E+
Sbjct: 63  ETPFFTLSA-VTSGVKDVREVIDRAKSNRFFSQSSPILFIDEIHRFSKSQQDSLLGAVEN 121

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156
             + L+    E PS   ++  LSR  L
Sbjct: 122 GTVTLIGATTENPSFEVIRPLLSRCQL 148


>gi|323464281|gb|ADX76434.1| ATPase AAA family protein [Staphylococcus pseudintermedius ED99]
          Length = 423

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 96/205 (46%), Gaps = 17/205 (8%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           S +RPR ++E  GQ        +      A+   L  ++F GPPG+GKT++AQ +A    
Sbjct: 8   SRMRPRNIDEVIGQQHLVGETGIIRRMVNAKR--LSSMIFYGPPGIGKTSIAQAIAGSTA 65

Query: 80  VNFRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
             FR  +  V     D+  ++    +  + +L +DEIHRL    ++ L P +E+ ++ ++
Sbjct: 66  FKFRQLNA-VTNTKKDMQMIVDEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKI-VL 123

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
           +G   S     IN       A  +R  +      D+  I + LN + +ED     +RG K
Sbjct: 124 IGATTSNPYHAIN------PAIRSRAQIFELFPLDKDDIKVALN-HALED----EERGLK 172

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIA 222
               ++ D+A    A +S+G  R A
Sbjct: 173 QFDASIDDDAFEYFATQSQGDVRSA 197


>gi|325478638|gb|EGC81750.1| ATPase, AAA family [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 439

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 71/141 (50%), Gaps = 12/141 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L+E+ GQ       K+     KA  + +   +F GPPG+GKT+LA++++ +  + 
Sbjct: 22  LRPKNLDEYIGQEHLVGEGKIINRMIKA--DRIYSCIFYGPPGVGKTSLAKIISEKTNMA 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F   S  V +   DL   +   +D       + +LFIDEIHR +   ++ L P +ED  +
Sbjct: 80  FEEISA-VASGISDLKKKVQIAKDNLSFENKKTILFIDEIHRFNKSQQDYLLPFVEDSTI 138

Query: 135 DLM--VGEGPSARSVKINLSR 153
            L+    E P     K  +SR
Sbjct: 139 TLIGATTENPYFEINKALISR 159


>gi|237742495|ref|ZP_04572976.1| ATPase [Fusobacterium sp. 4_1_13]
 gi|229430143|gb|EEO40355.1| ATPase [Fusobacterium sp. 4_1_13]
          Length = 407

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 97/230 (42%), Gaps = 41/230 (17%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            L  +N    +     LRP++L+EF GQ +      V           L + +F GPPG 
Sbjct: 2   NLFQKNYKNVEPLAYKLRPKSLDEFVGQEKLLGKDGVITRLI--LNSTLSNSIFYGPPGC 59

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLT----NLE---DRDVLFIDEIHRLS 118
           GK++L ++++  L  NF   +   IA   D+  ++     N+E    R +LF+DEIHR +
Sbjct: 60  GKSSLGEIISNTLDCNFEKLNA-TIASVSDIRNVVETARRNIELYNKRTILFLDEIHRFN 118

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIP 177
              ++ L    ED  L                    TLI ATT      NP  +    + 
Sbjct: 119 KNQQDALLSYTEDGTL--------------------TLIGATTE-----NPYYNINNALL 153

Query: 178 IRLNFYEI-----EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
            R+  +E      ED+  ++ +G     + ++D+    I   S+G  RIA
Sbjct: 154 SRVMVFEFKALTNEDIVKLINKGLNFLNINMSDKIKEIIVDISQGDSRIA 203


>gi|189466213|ref|ZP_03014998.1| hypothetical protein BACINT_02583 [Bacteroides intestinalis DSM
           17393]
 gi|189434477|gb|EDV03462.1| hypothetical protein BACINT_02583 [Bacteroides intestinalis DSM
           17393]
          Length = 424

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 76/147 (51%), Gaps = 18/147 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL+E+ GQ   V   + L+  I+A +     +   +  GPPG+GKTTLAQ++A +L
Sbjct: 8   LRPKTLDEYIGQKHLVGPGAILRKMIDAGR-----ISSFILWGPPGVGKTTLAQIIANKL 62

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V +   D+  ++   +          +LFIDEIHR S   ++ L  A+E 
Sbjct: 63  ETPFYTLSA-VTSGVKDVREVIERAKSNRFFSQGSPILFIDEIHRFSKSQQDSLLGAVEQ 121

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156
             + L+    E PS   ++  LSR  L
Sbjct: 122 GTVTLIGATTENPSFEVIRPLLSRCQL 148


>gi|114566015|ref|YP_753169.1| recombination factor protein RarA [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|114336950|gb|ABI67798.1| Recombination protein MgsA [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 440

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 77/268 (28%), Positives = 118/268 (44%), Gaps = 41/268 (15%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPR+L+E  GQ   +   S L   IE  +     L   +  GPPG GKTT+A ++AR  
Sbjct: 22  MRPRSLDEVVGQEHIIGPDSPLHQAIENDR-----LQSFVLYGPPGSGKTTIAHIIARTT 76

Query: 79  GVNF------RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
             ++       S  G +   A D A  L   +   ++F+DEIHR +   +++L P +ED 
Sbjct: 77  SSHYAAIKAVSSGVGEIRKIAADAADHLKYYQQSSIIFVDEIHRFNKSQQDVLLPYVEDG 136

Query: 133 QLDLMVGEGPSARSVKIN---LSRFTL-IAATTRVGLLTNPLQDRFGIPIR-LNFYEI-- 185
            L +++G        +IN   LSR  L I        L   ++     P R L  + I  
Sbjct: 137 TL-ILIGATTENPLYEINNALLSRMKLYIMEALNANSLRRIVEQALADPERGLGKHNISI 195

Query: 186 --EDLKTIVQ--RGAKLTGLAVTDEAACEIAMRS---RGTP----RIAGRLLRRVRDFAE 234
             + +  IVQ  +G   T L + D      + +    R TP    ++ GRL+ +  D + 
Sbjct: 196 DEQSMVMIVQAAQGDARTALNILDTLHNSYSSKDGSLRITPELLEKVTGRLILKY-DRSG 254

Query: 235 VAHAKTITREIA-------DAALLRLAI 255
             H  TI+  I        DAAL  LA+
Sbjct: 255 DYHYDTISAFIKSIRGSDPDAALFWLAV 282


>gi|163745570|ref|ZP_02152930.1| ATPase, AAA family protein [Oceanibulbus indolifex HEL-45]
 gi|161382388|gb|EDQ06797.1| ATPase, AAA family protein [Oceanibulbus indolifex HEL-45]
          Length = 435

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/137 (34%), Positives = 70/137 (51%), Gaps = 14/137 (10%)

Query: 22  LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPR L E  GQ +     + L V + +      AL  ++F GPPG+GKTT+A+++A E 
Sbjct: 23  LRPRALVEVIGQDQVLGPDAPLTVMLASG-----ALSSLIFWGPPGVGKTTIARLLADET 77

Query: 79  GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
            ++F   S      P + K  D A L        +LF+DEIHR +   ++   P MED  
Sbjct: 78  DLHFVQISAIFSGVPELRKVFDAAKLRRRQGQGTLLFVDEIHRFNKAQQDGFLPHMEDGT 137

Query: 134 LDLMVGEGPSARSVKIN 150
           + L+VG      S ++N
Sbjct: 138 I-LLVGATTENPSFELN 153


>gi|254526293|ref|ZP_05138345.1| ATPase [Prochlorococcus marinus str. MIT 9202]
 gi|221537717|gb|EEE40170.1| ATPase [Prochlorococcus marinus str. MIT 9202]
          Length = 429

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 77/143 (53%), Gaps = 20/143 (13%)

Query: 2   MDREGLLSRNVSQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M  E L + + SQE+ +  L   LRP+ LE+F GQ +   N    + +A    + + + +
Sbjct: 1   MHSENLFT-DYSQEENNAPLADKLRPKNLEDFFGQ-QPILNENSLLRSAILN-DKISNFI 57

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTS---GPVIAKAGDLAALLTNLEDR-------DV 108
           F GPPG+GKTTL ++++     N RS       V++   +L   + N +DR        +
Sbjct: 58  FSGPPGVGKTTLIEIIS----FNTRSKLIKLNAVLSSVKELRNEIANAKDRLINSKRKTI 113

Query: 109 LFIDEIHRLSIIVEEILYPAMED 131
           LFIDE+HR + + ++ L P++E+
Sbjct: 114 LFIDEVHRFTAVQQDALLPSIEN 136


>gi|167761579|ref|ZP_02433706.1| hypothetical protein CLOSCI_03990 [Clostridium scindens ATCC 35704]
 gi|167660722|gb|EDS04852.1| hypothetical protein CLOSCI_03990 [Clostridium scindens ATCC 35704]
          Length = 437

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 86/174 (49%), Gaps = 24/174 (13%)

Query: 20  SLLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           S LRP +LE+F GQ         L+  IE      + +  ++F GPPG+GKTTLA ++A 
Sbjct: 18  SRLRPSSLEDFVGQEHLLGKGRMLRQLIER-----DQISSMIFWGPPGVGKTTLASIIAG 72

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130
               +F + S  V +   ++  ++   E+      R VLF+DEIHR +   ++   P +E
Sbjct: 73  RTKADFINFSA-VTSGIKEIKEVMRQAEESRCMGIRTVLFVDEIHRFNKAQQDAFLPFVE 131

Query: 131 DFQLDLMVGEGPSARSVKIN---LSR---FTLIA--ATTRVGLLTNPLQDRFGI 176
              + +++G      S ++N   LSR   F L A   T  V LLTN L    G+
Sbjct: 132 KGSI-VLIGATTENPSFEVNAALLSRCRVFVLKALEETDLVKLLTNALNSPAGL 184


>gi|269836458|ref|YP_003318686.1| AAA ATPase central domain-containing protein [Sphaerobacter
           thermophilus DSM 20745]
 gi|269785721|gb|ACZ37864.1| AAA ATPase central domain protein [Sphaerobacter thermophilus DSM
           20745]
          Length = 460

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 73/146 (50%), Gaps = 14/146 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRTL+EF GQ +      +   A +   + L  ++  GPPG GKTTLA+++A      
Sbjct: 22  MRPRTLDEFVGQEQVVGPGTLLRRAIEQ--DRLSSLILWGPPGSGKTTLARIIATVTKAE 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F   S  V A   DL   +    D       R +LFIDEIHR +   ++ + P +ED  +
Sbjct: 80  FVQVSA-VSAGVADLRREVKEASDRLGMHGRRTILFIDEIHRFNRAQQDAILPYVEDGTI 138

Query: 135 DLMVGEGPSARSVKIN---LSRFTLI 157
            +++G      S ++N   LSR  +I
Sbjct: 139 -ILIGATTENPSFEVNSPLLSRSRVI 163


>gi|163740269|ref|ZP_02147663.1| recombination protein [Phaeobacter gallaeciensis 2.10]
 gi|161386127|gb|EDQ10502.1| recombination protein [Phaeobacter gallaeciensis 2.10]
          Length = 440

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 71/137 (51%), Gaps = 14/137 (10%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP++L E  GQ +       L V + +      +L  ++F GPPG+GKTT+A+++ARE 
Sbjct: 28  LRPQSLAEVIGQAQVLGEDAPLGVMLASG-----SLSSLIFWGPPGVGKTTIARLLARET 82

Query: 79  GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
            ++F   S      P + K  + A +        +LF+DEIHR +   ++   P MED  
Sbjct: 83  DLHFVQISAIFTGVPDLKKVFEAAKIRRQNGQGTLLFVDEIHRFNKAQQDGFLPHMEDGT 142

Query: 134 LDLMVGEGPSARSVKIN 150
           + L+VG      S ++N
Sbjct: 143 I-LLVGATTENPSFELN 158


>gi|163739476|ref|ZP_02146886.1| AAA ATPase, central region [Phaeobacter gallaeciensis BS107]
 gi|161387229|gb|EDQ11588.1| AAA ATPase, central region [Phaeobacter gallaeciensis BS107]
          Length = 440

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 71/137 (51%), Gaps = 14/137 (10%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP++L E  GQ +       L V + +      +L  ++F GPPG+GKTT+A+++ARE 
Sbjct: 28  LRPQSLAEVIGQAQVLGEDAPLGVMLASG-----SLSSLIFWGPPGVGKTTIARLLARET 82

Query: 79  GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
            ++F   S      P + K  + A +        +LF+DEIHR +   ++   P MED  
Sbjct: 83  DLHFVQISAIFTGVPDLKKVFEAAKIRRQNGQGTLLFVDEIHRFNKAQQDGFLPHMEDGT 142

Query: 134 LDLMVGEGPSARSVKIN 150
           + L+VG      S ++N
Sbjct: 143 I-LLVGATTENPSFELN 158


>gi|307322100|ref|ZP_07601476.1| AAA ATPase central domain protein [Sinorhizobium meliloti AK83]
 gi|306892282|gb|EFN23092.1| AAA ATPase central domain protein [Sinorhizobium meliloti AK83]
          Length = 436

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 68/135 (50%), Gaps = 10/135 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPRTL E TGQ        V      +   +L  ++F GPPG GKTT+A++++ E G+ 
Sbjct: 23  LRPRTLAEVTGQEHLTGPDGVLTRMIAS--GSLGSMIFWGPPGTGKTTVARLLSGEAGLA 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F   S  + +   DL  +  +   R       +LF+DEIHR +   ++   P MED  + 
Sbjct: 81  FEQISA-IFSGVADLKKVFESARARRMSGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTV- 138

Query: 136 LMVGEGPSARSVKIN 150
           ++VG      S ++N
Sbjct: 139 ILVGATTENPSFELN 153


>gi|303326761|ref|ZP_07357203.1| ATPase, AAA family [Desulfovibrio sp. 3_1_syn3]
 gi|302862749|gb|EFL85681.1| ATPase, AAA family [Desulfovibrio sp. 3_1_syn3]
          Length = 409

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 70/138 (50%), Gaps = 11/138 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  + +F GQ      L+  ++A +     L  +LF GPPG GK+TLA ++A+  G  
Sbjct: 11  MRPDDVAQFLGQSHLADRLRSLMQAKR-----LPSLLFFGPPGCGKSTLALLLAKSTGKK 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VG 139
           +   S P   +AG L  L   L   ++L +DE+HR S   ++   P +E  +L L+    
Sbjct: 66  YLRLSAP---EAG-LQHLRRALAGVEILVLDELHRFSKAQQDFFLPLVESGELTLLATTT 121

Query: 140 EGPSARSVKINLSRFTLI 157
           E PS    +  LSR  ++
Sbjct: 122 ENPSFSVTRQLLSRLHVL 139


>gi|257065126|ref|YP_003144798.1| Recombination protein MgsA [Slackia heliotrinireducens DSM 20476]
 gi|256792779|gb|ACV23449.1| Recombination protein MgsA [Slackia heliotrinireducens DSM 20476]
          Length = 439

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 73/134 (54%), Gaps = 8/134 (5%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG-- 79
           LRP +L+E+ GQ       KV  +  +A  + +  ++F GPPG+GKTTLAQ++A +    
Sbjct: 18  LRPLSLDEYAGQKHLVGEGKVLRKLIEA--DQVSSMIFWGPPGVGKTTLAQIIAHQTNAK 75

Query: 80  -VNFRSTSGPV--IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
            VNF + +  +  I +    A    +L ++ +LF+DEIHR +   ++   P +E   + +
Sbjct: 76  FVNFSAVTSGIKEIRQVMKQAENNRSLGEKTILFVDEIHRFNKAQQDAFLPFVEKGTI-I 134

Query: 137 MVGEGPSARSVKIN 150
           ++G      S ++N
Sbjct: 135 LIGATTENPSFEVN 148


>gi|307314388|ref|ZP_07593994.1| AAA ATPase central domain protein [Sinorhizobium meliloti BL225C]
 gi|306899086|gb|EFN29728.1| AAA ATPase central domain protein [Sinorhizobium meliloti BL225C]
          Length = 436

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 68/135 (50%), Gaps = 10/135 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPRTL E TGQ        V      +   +L  ++F GPPG GKTT+A++++ E G+ 
Sbjct: 23  LRPRTLAEVTGQEHLTGPDGVLTRMIAS--GSLGSMIFWGPPGTGKTTVARLLSGEAGLA 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F   S  + +   DL  +  +   R       +LF+DEIHR +   ++   P MED  + 
Sbjct: 81  FEQISA-IFSGVADLKKVFESARARRMSGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTV- 138

Query: 136 LMVGEGPSARSVKIN 150
           ++VG      S ++N
Sbjct: 139 ILVGATTENPSFELN 153


>gi|255327169|ref|ZP_05368244.1| recombination factor protein RarA [Rothia mucilaginosa ATCC 25296]
 gi|255295787|gb|EET75129.1| recombination factor protein RarA [Rothia mucilaginosa ATCC 25296]
          Length = 503

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/134 (36%), Positives = 70/134 (52%), Gaps = 14/134 (10%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRT++E  GQ   +   + L+V +    A       V+  GPPG GKTTLA V+AR  
Sbjct: 51  MRPRTIDEVLGQEHLLTPGAPLRV-LAGENAGPAGPSSVILYGPPGTGKTTLAHVIARAP 109

Query: 79  GVNFRSTSGPVIAKAGDLAALLTN-LEDRD------VLFIDEIHRLSIIVEEILYPAMED 131
           G  F   S  + A   D+ A++   L DRD      VLF+DEIHR +   ++ L P +E+
Sbjct: 110 GRKFVELSA-ITAGVKDVRAVMDQALLDRDMYGTTTVLFLDEIHRFTKAQQDALLPGVEN 168

Query: 132 FQLDLMVG--EGPS 143
             + L+    E PS
Sbjct: 169 RWVILVAATTENPS 182


>gi|167854588|ref|ZP_02477369.1| hypothetical protein HPS_02389 [Haemophilus parasuis 29755]
 gi|219872223|ref|YP_002476598.1| recombination factor protein RarA [Haemophilus parasuis SH0165]
 gi|167854343|gb|EDS25576.1| hypothetical protein HPS_02389 [Haemophilus parasuis 29755]
 gi|219692427|gb|ACL33650.1| recombination factor protein RarA [Haemophilus parasuis SH0165]
          Length = 447

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/118 (36%), Positives = 62/118 (52%), Gaps = 13/118 (11%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL E+ GQ         L+  IEA  + +     ++F GPPG GKTTLA+++A EL
Sbjct: 19  MRPRTLAEYVGQSHLIGEGKPLRRAIEAGHSHS-----MIFWGPPGTGKTTLAEIIANEL 73

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
                     TSG   I +A + A L      R +LF+DE+HR +   ++   P +ED
Sbjct: 74  DAEVERLSAVTSGIKEIREAIEKAKLNRQSGRRTLLFVDEVHRFNKSQQDAFLPHIED 131


>gi|257469472|ref|ZP_05633564.1| recombination factor protein RarA [Fusobacterium ulcerans ATCC
           49185]
 gi|317063716|ref|ZP_07928201.1| ATPase [Fusobacterium ulcerans ATCC 49185]
 gi|313689392|gb|EFS26227.1| ATPase [Fusobacterium ulcerans ATCC 49185]
          Length = 409

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 98/215 (45%), Gaps = 41/215 (19%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP  L++F GQ +       L+  IE      +++ + +F GPPG GK++L +++++ L
Sbjct: 18  LRPTNLDDFIGQEKILGKGGVLRKLIEK-----QSISNSIFFGPPGCGKSSLGEIISKTL 72

Query: 79  GVNFRSTSGPVIAKAGDLAALL----TNLE---DRDVLFIDEIHRLSIIVEEILYPAMED 131
             NF + +  V A   DL  ++     NLE    + +LF+DEIHR + + ++ L    E 
Sbjct: 73  DSNFETLNATV-ASLNDLREIVEKAKKNLEFYGKKTILFLDEIHRFNKLQQDALLSYCES 131

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTR--VGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             L                    TLI ATT      L N L  R  I         ++++
Sbjct: 132 GIL--------------------TLIGATTENPYYSLNNALLSRVMI-FEFKSLSRDNIR 170

Query: 190 TIVQRGAKLTGL--AVTDEAACEIAMRSRGTPRIA 222
            I+++G K  GL   ++ E    I   S+G  RIA
Sbjct: 171 EILEKGVKYIGLEEKISKEVIECILDISQGDSRIA 205


>gi|83941468|ref|ZP_00953930.1| ATPase, AAA family protein [Sulfitobacter sp. EE-36]
 gi|83847288|gb|EAP85163.1| ATPase, AAA family protein [Sulfitobacter sp. EE-36]
          Length = 435

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 72/137 (52%), Gaps = 14/137 (10%)

Query: 22  LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPR+L E  GQ +     + L V +++      +L  ++F GPPG+GKTT+A+++A E 
Sbjct: 23  LRPRSLGEVIGQSQVLGPDAPLTVMLQSG-----SLGSLIFWGPPGVGKTTIARLLADET 77

Query: 79  GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
            ++F   S      P + K  D A +        +LF+DEIHR +   ++   P MED  
Sbjct: 78  DLHFVQISAIFSGVPELRKVFDAAKIRRQNGRGTLLFVDEIHRFNKAQQDGFLPHMEDGT 137

Query: 134 LDLMVGEGPSARSVKIN 150
           + L+VG      S ++N
Sbjct: 138 I-LLVGATTENPSFELN 153


>gi|283458016|ref|YP_003362623.1| ATPase [Rothia mucilaginosa DY-18]
 gi|283134038|dbj|BAI64803.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [Rothia mucilaginosa DY-18]
          Length = 513

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/134 (36%), Positives = 70/134 (52%), Gaps = 14/134 (10%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRT++E  GQ   +   + L+V +    A       V+  GPPG GKTTLA V+AR  
Sbjct: 52  MRPRTIDEVLGQEHLLTPGAPLRV-LAGENAGPAGPSSVILYGPPGTGKTTLAHVIARAP 110

Query: 79  GVNFRSTSGPVIAKAGDLAALLTN-LEDRD------VLFIDEIHRLSIIVEEILYPAMED 131
           G  F   S  + A   D+ A++   L DRD      VLF+DEIHR +   ++ L P +E+
Sbjct: 111 GRKFVELSA-ITAGVKDVRAVMDQALLDRDMYGTTTVLFLDEIHRFTKAQQDALLPGVEN 169

Query: 132 FQLDLMVG--EGPS 143
             + L+    E PS
Sbjct: 170 RWVILVAATTENPS 183


>gi|256811337|ref|YP_003128706.1| Replication factor C [Methanocaldococcus fervens AG86]
 gi|256794537|gb|ACV25206.1| Replication factor C [Methanocaldococcus fervens AG86]
          Length = 316

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 69/278 (24%), Positives = 119/278 (42%), Gaps = 43/278 (15%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +   RP+TL+E  GQ E    LK ++E      +++ H+LF GPPG+GKTT A  +AR+L
Sbjct: 6   VEKYRPKTLDEIVGQDEIVKRLKKYVEK-----KSMPHLLFSGPPGVGKTTAALCLARDL 60

Query: 79  -GVNFRSTSGPVIAK-AGDLAALLTNLED-----------RDVLFIDEIHRLSIIVEEIL 125
            G N+R     + A     +  + T ++D             ++F+DE   L+   +  L
Sbjct: 61  FGENWRENFLELNASDERGIDVIRTKVKDFARTKPIGDVPFKIIFLDESDALTPDAQNAL 120

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
              ME +                 ++ RF L  +      +  P+Q R  I  R +  + 
Sbjct: 121 RRTMEKYS----------------DVCRFIL--SCNYPSKIIPPIQSRCAI-FRFSPLKK 161

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           ED+   ++  A+  GL +T+     I   S G  R A  +L+     +EV   + + +  
Sbjct: 162 EDIAKKLKEIAEKEGLKLTESGLEAIIYVSEGDMRKAINVLQTAAALSEVIDDEIVYKVS 221

Query: 246 ADA------ALLRLAIDKMGFDQLDLRYLTMIARNFGG 277
           + A       ++ LA++    +  DL Y  M+     G
Sbjct: 222 SRARPEEVKKMMELALEGKFVEARDLLYKLMVEWGMSG 259


>gi|15965138|ref|NP_385491.1| recombination factor protein RarA [Sinorhizobium meliloti 1021]
 gi|15074318|emb|CAC45964.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021]
          Length = 436

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 68/135 (50%), Gaps = 10/135 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPRTL E TGQ        V      +   +L  ++F GPPG GKTT+A++++ E G+ 
Sbjct: 23  LRPRTLAEVTGQEHLTGPDGVLTRMIAS--GSLGSMIFWGPPGTGKTTVARLLSGEAGLA 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F   S  + +   DL  +  +   R       +LF+DEIHR +   ++   P MED  + 
Sbjct: 81  FEQISA-IFSGVADLKKVFESARARRMSGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTV- 138

Query: 136 LMVGEGPSARSVKIN 150
           ++VG      S ++N
Sbjct: 139 ILVGATTENPSFELN 153


>gi|172058090|ref|YP_001814550.1| ATPase central domain-containing protein [Exiguobacterium sibiricum
           255-15]
 gi|171990611|gb|ACB61533.1| AAA ATPase central domain protein [Exiguobacterium sibiricum
           255-15]
          Length = 437

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 64/215 (29%), Positives = 92/215 (42%), Gaps = 40/215 (18%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP++L+E  GQ        +   A    A+ L  V+F GPPG GKTTLA+V++      
Sbjct: 18  MRPQSLDEIVGQRHLIGESTLLRRAI--LADRLGTVIFYGPPGTGKTTLARVISSYTKSA 75

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F   +  V AK   L  +L   E R        +LF+DEIHR + + ++ L PA+E   +
Sbjct: 76  FEQLNA-VTAKLDQLREVLKAAESRLQFDQQKTILFLDEIHRFNKMQQDALLPALEAGTI 134

Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            L+    E PS       LSR T+                RF  P        EDL+ ++
Sbjct: 135 TLIGATTENPSFEVNAALLSRATVF---------------RFETPT------TEDLRVVL 173

Query: 193 -------QRGAKLTGLAVTDEAACEIAMRSRGTPR 220
                  +RG     + VT+EA       S G  R
Sbjct: 174 HRTLHDTERGLGKYPITVTEEAVDHYVKLSDGDYR 208


>gi|293372974|ref|ZP_06619343.1| recombination factor protein RarA [Bacteroides ovatus SD CMC 3f]
 gi|299145353|ref|ZP_07038421.1| ATPase, AAA family [Bacteroides sp. 3_1_23]
 gi|292632042|gb|EFF50651.1| recombination factor protein RarA [Bacteroides ovatus SD CMC 3f]
 gi|298515844|gb|EFI39725.1| ATPase, AAA family [Bacteroides sp. 3_1_23]
          Length = 423

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 77/147 (52%), Gaps = 18/147 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL+++ GQ   V   + L+  I+A +     +   +  GPPG+GKTTLAQ++A +L
Sbjct: 8   LRPKTLDDYIGQKHLVGPGAILRKMIDAGR-----ISSFILWGPPGVGKTTLAQIIANKL 62

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V +   D+  ++          +   +LFIDEIHR S   ++ L  A+E+
Sbjct: 63  ETPFYTLSA-VTSGVKDVREVIERAKSNRFFSQSSPILFIDEIHRFSKSQQDSLLGAVEN 121

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156
             + L+    E PS   ++  LSR  L
Sbjct: 122 GTVTLIGATTENPSFEVIRPLLSRCQL 148


>gi|29346615|ref|NP_810118.1| recombination factor protein RarA [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253568023|ref|ZP_04845434.1| recombination factor protein RarA [Bacteroides sp. 1_1_6]
 gi|29338511|gb|AAO76312.1| putative ATPase, AAA family [Bacteroides thetaiotaomicron VPI-5482]
 gi|251842096|gb|EES70176.1| recombination factor protein RarA [Bacteroides sp. 1_1_6]
          Length = 422

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 77/147 (52%), Gaps = 18/147 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL+++ GQ   V   + L+  I+A +     +   +  GPPG+GKTTLAQ++A +L
Sbjct: 8   LRPKTLDDYIGQKHLVGPGAILRKMIDAGR-----ISSFILWGPPGVGKTTLAQIIANKL 62

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V +   D+  ++          +   +LFIDEIHR S   ++ L  A+E+
Sbjct: 63  ETPFYTLSA-VTSGVKDVREVIERAKSNRFFSQSSPILFIDEIHRFSKSQQDSLLGAVEN 121

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156
             + L+    E PS   ++  LSR  L
Sbjct: 122 GTVTLIGATTENPSFEVIRPLLSRCQL 148


>gi|326391411|ref|ZP_08212948.1| AAA ATPase central domain protein [Thermoanaerobacter ethanolicus
           JW 200]
 gi|325992546|gb|EGD51001.1| AAA ATPase central domain protein [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 443

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 118/261 (45%), Gaps = 40/261 (15%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+TL+EF GQ       K+  E  +   + +  ++  GPPG+GKTTLA ++A      
Sbjct: 23  MRPKTLDEFVGQEHLLGKGKLLRELIEK--DNITSMILWGPPGVGKTTLAMIIANMTNSK 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F + S  V++   ++  ++   E       R V+FIDEIHR +   ++   P +E   + 
Sbjct: 81  FITFSA-VLSGIKEIKEIMAKAELDAMYGTRTVVFIDEIHRFNKAQQDAFLPHVEKGNI- 138

Query: 136 LMVGEGPSARSVKIN---LSR---FTLIAATTR--VGLLTNPLQDRFGIPIRLNFYEIED 187
           +++G      S ++N   LSR   F +   T    + LL   L+D+              
Sbjct: 139 ILIGATTENPSFEVNSALLSRSKVFVMKPLTEEDLLVLLKRALRDK-------------- 184

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE--I 245
                +RG  +  + ++ +   +IA+ + G  R+A   L      AEV   K I  +  +
Sbjct: 185 -----ERGLGMYDIEISGDQLKKIALFANGDARVALNTLEIAVMAAEVIEGKRIVTDDIL 239

Query: 246 ADAALLR-LAIDKMGFDQLDL 265
           ADA   + L  DK G +  +L
Sbjct: 240 ADAMQKKTLLYDKEGEEHYNL 260


>gi|282880078|ref|ZP_06288798.1| recombination factor protein RarA [Prevotella timonensis CRIS
           5C-B1]
 gi|281305951|gb|EFA97991.1| recombination factor protein RarA [Prevotella timonensis CRIS
           5C-B1]
          Length = 431

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 73/147 (49%), Gaps = 18/147 (12%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL+E+ GQ         L+  IE+    +      +  GPPG+GKTTLAQ+VA +L
Sbjct: 9   MRPRTLDEYVGQQHLVGKDAVLRKMIESGHVSS-----FILWGPPGVGKTTLAQIVANKL 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V +   D+  ++   +          +LFIDEIHR S   ++ L  A+E 
Sbjct: 64  ETPFYTLSA-VTSGVKDVRQVIERAKSNHFFQTASPILFIDEIHRFSKSQQDSLLGAVER 122

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156
             + L+    E PS   ++  LSR  L
Sbjct: 123 GIVTLIGATTENPSFEVIRPLLSRCQL 149


>gi|257066688|ref|YP_003152944.1| AAA ATPase central domain-containing protein [Anaerococcus prevotii
           DSM 20548]
 gi|256798568|gb|ACV29223.1| AAA ATPase central domain protein [Anaerococcus prevotii DSM 20548]
          Length = 428

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 75/142 (52%), Gaps = 14/142 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L ++ GQ     + K+     KA  + +  ++F GPPG+GKT+LA++++++  + 
Sbjct: 22  LRPKDLSDYLGQNHLIGDGKIINRMIKA--DRIYSMIFYGPPGVGKTSLAKIISQKTNMA 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F   S  V +   DL   +   +D       + +LFIDEIHR +   ++ L P +ED  L
Sbjct: 80  FEEISA-VASGISDLKKKVQIAKDNLSFENKKTILFIDEIHRFNKSQQDYLLPYVEDSTL 138

Query: 135 DLMVG---EGPSARSVKINLSR 153
            +++G   E P     K  +SR
Sbjct: 139 -ILIGATTENPYFEVNKALISR 159


>gi|85859697|ref|YP_461899.1| recombination factor protein RarA [Syntrophus aciditrophicus SB]
 gi|85722788|gb|ABC77731.1| ATPase, AAA family [Syntrophus aciditrophicus SB]
          Length = 478

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 115/267 (43%), Gaps = 50/267 (18%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP TL+EF GQ   ++  S L+  IE  +     L  V+F GPPG GKTTLA++VA E 
Sbjct: 45  MRPETLDEFFGQEHLLKKHSLLRRAIEEDR-----LFSVIFWGPPGSGKTTLARIVAGET 99

Query: 79  GVNFRSTSGPVIAKAGDL-------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V++   +L        A   N   + VLF+DEIHR +   ++   P +E 
Sbjct: 100 KAYFAAFSA-VLSGVKELRKVVEEAEARWQNNRQKTVLFVDEIHRFNKAQQDAFLPHVES 158

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             + L+    E PS   +   LSR        RV L+  P  D             EDL 
Sbjct: 159 GLITLIGATTENPSFEVIAPLLSR-------CRV-LVLKPFSD-------------EDLV 197

Query: 190 TIV-------QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT-- 240
            I+       +RG    GL +  +A   +   + G  R A   L  V         ++  
Sbjct: 198 RILNRVLRDRRRGLGNLGLELDQDALAYLVHTADGDARTALNSLEAVASLLAAGEGQSSR 257

Query: 241 ITREIADAALLR--LAIDKMGFDQLDL 265
           I+R   + AL +  L  DK G +  +L
Sbjct: 258 ISRVQVEEALQKKGLQYDKSGAEHYNL 284


>gi|269114890|ref|YP_003302653.1| ATPase, AAA family [Mycoplasma hominis]
 gi|268322515|emb|CAX37250.1| ATPase, AAA family [Mycoplasma hominis ATCC 23114]
          Length = 404

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 59/206 (28%), Positives = 96/206 (46%), Gaps = 33/206 (16%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +L+RP+ LE+F    E     +  IE    R+      +F G PG GKTT++ ++A  L 
Sbjct: 7   NLIRPKILEDFICPQEQKKLFQKIIENNDYRS-----FIFYGKPGTGKTTISYILANALK 61

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
           VN+   +  +  K      L+  L+   +L IDEIHRL+   ++IL P +E+   DL+  
Sbjct: 62  VNYEYFNAAIENKED----LVHKLKLNKILIIDEIHRLNKDKQDILLPYLEN---DLI-- 112

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLT-NP-LQDRFGIPIRLNFYEIEDLKTIVQRGA- 196
                          T+ A TT       NP L+ R  I I +    I+DL + ++    
Sbjct: 113 ---------------TIYATTTENPYFKLNPALRSRCSI-IEITKPTIQDLSSCLKNACL 156

Query: 197 KLTGLAVTDEAACEIAMRSRGTPRIA 222
           K  G+ +  + A  +A+++ G  R A
Sbjct: 157 KTFGVDLNKDIADYLALQANGDFRSA 182


>gi|187734543|ref|YP_001876655.1| ATPase AAA [Akkermansia muciniphila ATCC BAA-835]
 gi|187424595|gb|ACD03874.1| AAA ATPase central domain protein [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 459

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 63/116 (54%), Gaps = 10/116 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRTL+E  GQ    +  K+   A +   +    ++F GPPG GKTTLA V+AR    +
Sbjct: 30  MRPRTLDEVAGQKHLLAPGKLLRRAIET--DRFTSLIFYGPPGCGKTTLAAVIARTTNAH 87

Query: 82  FRSTSGPVIAKAGDL------AALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAME 130
           F   +G V +   D+      A +  ++  R  VLF+DE+HR +   +++L P +E
Sbjct: 88  FMMLNG-VESNVADIREKIAQAQMRMSMHGRKTVLFVDELHRFNKAQQDVLLPHLE 142


>gi|237716254|ref|ZP_04546735.1| recombination factor protein RarA [Bacteroides sp. D1]
 gi|237721058|ref|ZP_04551539.1| recombination factor protein RarA [Bacteroides sp. 2_2_4]
 gi|262407859|ref|ZP_06084407.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294647656|ref|ZP_06725222.1| recombination factor protein RarA [Bacteroides ovatus SD CC 2a]
 gi|294807679|ref|ZP_06766472.1| recombination factor protein RarA [Bacteroides xylanisolvens SD CC
           1b]
 gi|298481000|ref|ZP_06999195.1| ATPase, AAA family [Bacteroides sp. D22]
 gi|229443901|gb|EEO49692.1| recombination factor protein RarA [Bacteroides sp. D1]
 gi|229449893|gb|EEO55684.1| recombination factor protein RarA [Bacteroides sp. 2_2_4]
 gi|262354667|gb|EEZ03759.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292637005|gb|EFF55457.1| recombination factor protein RarA [Bacteroides ovatus SD CC 2a]
 gi|294445115|gb|EFG13789.1| recombination factor protein RarA [Bacteroides xylanisolvens SD CC
           1b]
 gi|298273023|gb|EFI14589.1| ATPase, AAA family [Bacteroides sp. D22]
          Length = 423

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 77/147 (52%), Gaps = 18/147 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL+++ GQ   V   + L+  I+A +     +   +  GPPG+GKTTLAQ++A +L
Sbjct: 8   LRPKTLDDYIGQKHLVGPGAILRKMIDAGR-----ISSFILWGPPGVGKTTLAQIIANKL 62

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V +   D+  ++          +   +LFIDEIHR S   ++ L  A+E+
Sbjct: 63  ETPFYTLSA-VTSGVKDVREVIERAKSNRFFSQSSPILFIDEIHRFSKSQQDSLLGAVEN 121

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156
             + L+    E PS   ++  LSR  L
Sbjct: 122 GTVTLIGATTENPSFEVIRPLLSRCQL 148


>gi|163840727|ref|YP_001625132.1| recombination factor protein RarA [Renibacterium salmoninarum ATCC
           33209]
 gi|162954203|gb|ABY23718.1| ATPase, AAA family [Renibacterium salmoninarum ATCC 33209]
          Length = 462

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/133 (36%), Positives = 67/133 (50%), Gaps = 11/133 (8%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPR L+E  GQ   +   S L+    AA   A     ++  GPPG GKTTLA V+AR  
Sbjct: 31  MRPRNLDEVLGQQHLLGEGSPLRRLSAAANDSAAGPTSLILWGPPGTGKTTLAHVIARGP 90

Query: 79  GVNFRSTSGPV-----IAKAGDLAALLTNLEDR-DVLFIDEIHRLSIIVEEILYPAMEDF 132
           G +F   S        + K  D A   ++L  R  VLF+DEIHR +   ++ L P +E+ 
Sbjct: 91  GRSFVELSAITAGVKDVRKVMDDALTASDLHGRTTVLFLDEIHRFTKAQQDALLPGVENR 150

Query: 133 QLDLMVG--EGPS 143
            + L+    E PS
Sbjct: 151 WVVLVAATTENPS 163


>gi|328955597|ref|YP_004372930.1| Recombination protein MgsA [Coriobacterium glomerans PW2]
 gi|328455921|gb|AEB07115.1| Recombination protein MgsA [Coriobacterium glomerans PW2]
          Length = 462

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 57/164 (34%), Positives = 85/164 (51%), Gaps = 28/164 (17%)

Query: 22  LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP +L +F GQ EA    S L+  IE  +     L  V+  GP G+GKTTLA+++A   
Sbjct: 23  MRPSSLADFVGQSEAVGPGSWLRQAIELDR-----LSSVILFGPAGVGKTTLARIIA--- 74

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED----------RDVLFIDEIHRLSIIVEEILYPA 128
            +N RS    V A +G +  L   +ED          R +LFIDEIHR S   ++ L  A
Sbjct: 75  -MNTRSEFIEVSAVSGTVKDLRRAIEDAKRRLLSLDRRTILFIDEIHRFSKSQQDTLLHA 133

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           +ED ++ +MVG        ++N    + + + +R+  L  PLQD
Sbjct: 134 VED-RVVVMVGATTENPFFEVN----SALLSRSRIVEL-KPLQD 171


>gi|317478867|ref|ZP_07938017.1| ATPase [Bacteroides sp. 4_1_36]
 gi|316904949|gb|EFV26753.1| ATPase [Bacteroides sp. 4_1_36]
          Length = 423

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 75/147 (51%), Gaps = 18/147 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPRTL+E+ GQ   V   + L+  I+  +     +   +  GPPG+GKTTLAQ++A +L
Sbjct: 8   LRPRTLDEYIGQKHLVGPGAVLRKMIDVGR-----ISSFILWGPPGVGKTTLAQIIANKL 62

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V +   D+  ++   +          +LFIDEIHR S   ++ L  A+E 
Sbjct: 63  ETPFYTLSA-VTSGVKDVRDVIERAKSNRFFSQASPILFIDEIHRFSKSQQDSLLGAVEQ 121

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156
             + L+    E PS   ++  LSR  L
Sbjct: 122 GTVTLIGATTENPSFEVIRPLLSRCQL 148


>gi|197284594|ref|YP_002150466.1| recombination factor protein RarA [Proteus mirabilis HI4320]
 gi|194682081|emb|CAR41637.1| putative ATPase [Proteus mirabilis HI4320]
          Length = 449

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 64/129 (49%), Gaps = 9/129 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP TLE++ GQ    +  K    A KA    L  ++  GPPG GKTTLA+++ R    +
Sbjct: 20  MRPETLEQYIGQKHLLAEGKPLPRAIKA--GQLHSMILWGPPGTGKTTLAEIIGRYAQAD 77

Query: 82  FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
                  TSG   I  A D+A    N   R +LF+DE+HR +   ++   P +ED  +  
Sbjct: 78  IERLSAVTSGIKEIRAAIDIAHQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 137

Query: 137 M--VGEGPS 143
           +    E PS
Sbjct: 138 IGATTENPS 146


>gi|259046674|ref|ZP_05737075.1| ATPase, AAA family domain protein [Granulicatella adiacens ATCC
           49175]
 gi|259036839|gb|EEW38094.1| ATPase, AAA family domain protein [Granulicatella adiacens ATCC
           49175]
          Length = 423

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 111/252 (44%), Gaps = 25/252 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRT+EE  GQ    S  K+      A+   L  ++  GPPG GKT++A  ++    V+
Sbjct: 10  MRPRTIEEVIGQEHLVSPGKIINRMVVAKQ--LSSMILYGPPGTGKTSIASAISGSTKVS 67

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR  +     K    + A    +    +L +DEIHRL    ++ L P +E+ ++ ++VG 
Sbjct: 68  FRQLNAATDTKKDLQIVAEEAKMSGSVILLLDEIHRLDKTKQDFLLPHIENGRI-ILVGA 126

Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
                 + IN +    I + T++  L  PL     I   +N  E E      +RG     
Sbjct: 127 TTENPYISINPA----IRSRTQIFEL-KPLSPEDIIKALVNAIEDE------ERGLGKLD 175

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE-----VAHAKTITREIADAALLR--L 253
           L V++EA    A  + G  R A   L       E     + H   IT +IA+  + R  L
Sbjct: 176 LDVSEEALNHFASSTNGDVRSALNALELAAKSTEPGEDGIIH---ITIQIAEECIQRKAL 232

Query: 254 AIDKMGFDQLDL 265
           + DK G    D+
Sbjct: 233 SYDKDGDHHYDV 244


>gi|260909479|ref|ZP_05916183.1| replication-associated recombination protein A [Prevotella sp. oral
           taxon 472 str. F0295]
 gi|260636404|gb|EEX54390.1| replication-associated recombination protein A [Prevotella sp. oral
           taxon 472 str. F0295]
          Length = 424

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 77/147 (52%), Gaps = 18/147 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPR+L+++ GQ   V   + L+  IEA +     +   +  GPPG+GKTTLAQ+VA++L
Sbjct: 9   MRPRSLDDYVGQKHLVGPNAVLRNMIEAGR-----IPSFILWGPPGVGKTTLAQIVAKKL 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V +   D+  ++   +          +LFIDEIHR S   ++ L  A+E 
Sbjct: 64  ETPFYTLSA-VTSGVKDVREVIEKAKGGRFFGSHSPILFIDEIHRFSKSQQDSLLGAVEK 122

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156
             + L+    E PS   ++  LSR  L
Sbjct: 123 GIVTLIGATTENPSFEVIRPLLSRCQL 149


>gi|227499837|ref|ZP_03929930.1| crossover junction endodeoxyribonuclease ATPase [Anaerococcus
           tetradius ATCC 35098]
 gi|227217946|gb|EEI83219.1| crossover junction endodeoxyribonuclease ATPase [Anaerococcus
           tetradius ATCC 35098]
          Length = 440

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 86/177 (48%), Gaps = 24/177 (13%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ LE + GQ       K+     KA  + +   +F GPPG+GKT+LA++++++  + 
Sbjct: 23  LRPKNLEAYLGQDHLLGPGKIITRMIKA--DRIYSCIFYGPPGVGKTSLAKIISQKTNMA 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F   S  V +   DL   +   +D       + +LFIDEIHR +   ++ L P +ED  L
Sbjct: 81  FEEISA-VASGINDLKKKVQIAKDNLAYENKKTILFIDEIHRFNKSQQDYLLPFVEDSTL 139

Query: 135 DLMVG---EGPSARSVKINLSR---FTLIAATTR-------VGLLTNPLQDRFGIPI 178
            +++G   E P     K  +SR   F L + + R       + L  +P+  R  I I
Sbjct: 140 -ILIGATTENPYFEVNKALISRMYVFELKSLSDRDLDRLIDMALNKDPILKRKNIDI 195


>gi|227356776|ref|ZP_03841161.1| recombination ATPase [Proteus mirabilis ATCC 29906]
 gi|227163066|gb|EEI48001.1| recombination ATPase [Proteus mirabilis ATCC 29906]
          Length = 457

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 64/129 (49%), Gaps = 9/129 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP TLE++ GQ    +  K    A KA    L  ++  GPPG GKTTLA+++ R    +
Sbjct: 28  MRPETLEQYIGQKHLLAEGKPLPRAIKA--GQLHSMILWGPPGTGKTTLAEIIGRYAQAD 85

Query: 82  FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
                  TSG   I  A D+A    N   R +LF+DE+HR +   ++   P +ED  +  
Sbjct: 86  IERLSAVTSGIKEIRAAIDIAHQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 145

Query: 137 M--VGEGPS 143
           +    E PS
Sbjct: 146 IGATTENPS 154


>gi|126695427|ref|YP_001090313.1| recombination factor protein RarA [Prochlorococcus marinus str. MIT
           9301]
 gi|126542470|gb|ABO16712.1| putative ATPase, AAA family [Prochlorococcus marinus str. MIT 9301]
          Length = 429

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 76/283 (26%), Positives = 125/283 (44%), Gaps = 40/283 (14%)

Query: 2   MDREGLLSRNVSQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M  E L + N SQ + +  L   LRP+ LE+F GQ +   N    + +A    + + + +
Sbjct: 1   MHSENLFT-NYSQIENNAPLADKLRPKNLEDFFGQ-QPILNENSLLRSAILN-DKISNFI 57

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTS---GPVIAKAGDLAALLTNLEDR-------DV 108
           F GPPG+GKTTL ++++     N RS       V++   +L + + N +DR        +
Sbjct: 58  FSGPPGVGKTTLIEIIS----FNTRSKLIKLNAVLSSVKELRSEIANAKDRLINSKRKTI 113

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLL 166
           LFIDE+HR + + ++ L P++E+  +  +    E P     K  +SR ++    T + L 
Sbjct: 114 LFIDEVHRFTAVQQDALLPSIENGTITFIGATTENPFFAVNKALVSRSSIF---TLLPLA 170

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
            N LQ             IE + T   +      + +T +A   +   S G  R     L
Sbjct: 171 ENDLQKI-----------IEKVITHYSKQKDSKKVYLTQDAISHLIKFSSGDARTLINAL 219

Query: 227 RRVRDFAEVAHAKT--ITREIADAALLRLAI--DKMGFDQLDL 265
               +      AK   I   IA+ AL +  I  DK G +  D+
Sbjct: 220 EMAIETTAANDAKEIHINLSIAEDALQKKNIVYDKNGQNHYDV 262


>gi|222085712|ref|YP_002544242.1| ATPase associated with chromosome architecture/replication protein
           [Agrobacterium radiobacter K84]
 gi|221723160|gb|ACM26316.1| ATPase associated with chromosome architecture/replication protein
           [Agrobacterium radiobacter K84]
          Length = 438

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 73/138 (52%), Gaps = 16/138 (11%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL + TGQ         L+  IE+      +L  ++F GPPG GKTT+A++++ E 
Sbjct: 24  LRPQTLADVTGQSHLTGEDGALRRMIESG-----SLGSMIFWGPPGTGKTTVARLLSGEA 78

Query: 79  GVNFRSTSGPVIAKAGDL-----AALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMEDF 132
           G+ F   S  + +   DL      A L  ++ R  +LF+DEIHR +   ++   P MED 
Sbjct: 79  GLAFEQISA-IFSGVADLKKVFETARLRRMDGRQTLLFVDEIHRFNRAQQDSFLPVMEDG 137

Query: 133 QLDLMVGEGPSARSVKIN 150
            + ++VG      S ++N
Sbjct: 138 TV-ILVGATTENPSFELN 154


>gi|325293302|ref|YP_004279166.1| recombination factor protein RarA [Agrobacterium sp. H13-3]
 gi|325061155|gb|ADY64846.1| recombination factor protein RarA [Agrobacterium sp. H13-3]
          Length = 438

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 70/138 (50%), Gaps = 16/138 (11%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL E TGQ         L+  I++      +L  ++F GPPG GKTT+A++++ E 
Sbjct: 24  LRPKTLAEVTGQPHLTGEEGVLRRMIDSG-----SLGSMIFWGPPGTGKTTVARLLSGEA 78

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDF 132
           G+ F   S  + +   DL  +      R       +LF+DEIHR +   ++   P MED 
Sbjct: 79  GLAFEQISA-IFSGVADLKKVFEAARTRRMNGRQTLLFVDEIHRFNRAQQDSFLPVMEDG 137

Query: 133 QLDLMVGEGPSARSVKIN 150
            + ++VG      S ++N
Sbjct: 138 TI-ILVGATTENPSFELN 154


>gi|220935170|ref|YP_002514069.1| recombination factor protein RarA [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996480|gb|ACL73082.1| recombination factor protein RarA [Thioalkalivibrio sp. HL-EbGR7]
          Length = 447

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 61/117 (52%), Gaps = 10/117 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR L+E+ GQ    +  K    A +   + L  +LF GPPG GKTTLA+++A   G  
Sbjct: 22  MRPRNLDEYAGQSHLLAPGKPLRRAIEE--DRLHSMLFWGPPGTGKTTLARMIAHYCGAQ 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131
           F + S  V++   D+ A +    +         VLF+DE+HR +   ++   P +ED
Sbjct: 80  FLTLSA-VLSGVKDIRAAVEQAREYRRMHGKPTVLFVDEVHRFNKSQQDAFLPHVED 135


>gi|52425506|ref|YP_088643.1| recombination factor protein RarA [Mannheimia succiniciproducens
           MBEL55E]
 gi|52307558|gb|AAU38058.1| unknown [Mannheimia succiniciproducens MBEL55E]
          Length = 446

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 61/118 (51%), Gaps = 13/118 (11%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP TLE++ GQ     N   L+  IEA  A +     ++F GPPG GKTTLA+++A ++
Sbjct: 20  MRPTTLEQYCGQQHLLGNGKPLRKAIEAGHAHS-----MIFWGPPGTGKTTLAEIIAHKI 74

Query: 79  GVNFRS----TSGPVIAKAGDLAALLTNLED-RDVLFIDEIHRLSIIVEEILYPAMED 131
                     TSG    +     A    L D R +LF+DE+HR +   ++   P +ED
Sbjct: 75  NAEVERISAVTSGIKEIREAIERAKQNRLADRRTILFVDEVHRFNKSQQDAFLPHIED 132


>gi|260577150|ref|ZP_05845127.1| AAA ATPase central domain protein [Rhodobacter sp. SW2]
 gi|259020624|gb|EEW23943.1| AAA ATPase central domain protein [Rhodobacter sp. SW2]
          Length = 436

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 78/257 (30%), Positives = 114/257 (44%), Gaps = 41/257 (15%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+TL E  GQ +  S        A   A +L  ++F GPPG+GKTT+A+++A E  + 
Sbjct: 23  LRPKTLAEVIGQGKVLSPEGPL--GAMLAAHSLSSLIFWGPPGVGKTTIARLLAHESDMA 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F   S  +     DL  +      R       +LF+DEIHR +   ++   P MED  + 
Sbjct: 81  FVQISA-IFTGVQDLRKVFEQARIRRANGQGTLLFVDEIHRFNKAQQDGFLPYMEDGTI- 138

Query: 136 LMVG---EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           L+VG   E PS          F L AA          L  R  + I L    ++DL+ + 
Sbjct: 139 LLVGATTENPS----------FELNAA----------LMSRAQV-IVLERLSLDDLERLA 177

Query: 193 QRGAKLTGLAVTDEAACEIAM--RSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           QR  +  G A+  +A    A+   + G  R A  L+ +V   A     K + RE     L
Sbjct: 178 QRAEQDMGRALPLKAEAREALLEMADGDGRAALNLIEQV---AAWKLDKPLDRETLSKRL 234

Query: 251 LRLA--IDKMGFDQLDL 265
           +R A   DK G +  +L
Sbjct: 235 MRRAAKYDKSGEEHYNL 251


>gi|307265951|ref|ZP_07547499.1| AAA ATPase central domain protein [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306919015|gb|EFN49241.1| AAA ATPase central domain protein [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 443

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 118/261 (45%), Gaps = 40/261 (15%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+TL+EF GQ       K+  E  +   + +  ++  GPPG+GKTTLA ++A      
Sbjct: 23  MRPKTLDEFVGQEHLLGKGKLLRELIEK--DNITSMILWGPPGVGKTTLAMIIANMTNSK 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F + S  V++   ++  ++   E       R V+FIDEIHR +   ++   P +E   + 
Sbjct: 81  FITFSA-VLSGIKEIKEIMAKAELDAMYGTRTVVFIDEIHRFNKAQQDAFLPHVEKGNI- 138

Query: 136 LMVGEGPSARSVKIN---LSR---FTLIAATTR--VGLLTNPLQDRFGIPIRLNFYEIED 187
           +++G      S ++N   LSR   F +   T    + LL   L+D+              
Sbjct: 139 ILIGATTENPSFEVNSALLSRSKVFVMKPLTEEDLLVLLKRALRDK-------------- 184

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE--I 245
                +RG  +  + ++ +   +IA+ + G  R+A   L      AEV   K I  +  +
Sbjct: 185 -----ERGLGMYDIEISGDQLKKIALFANGDARVALNTLEIAVMAAEVIEGKRIVTDDIL 239

Query: 246 ADAALLR-LAIDKMGFDQLDL 265
           ADA   + L  DK G +  +L
Sbjct: 240 ADAMQKKTLLYDKEGEEHYNL 260


>gi|90415910|ref|ZP_01223843.1| hypothetical protein GB2207_01717 [marine gamma proteobacterium
           HTCC2207]
 gi|90332284|gb|EAS47481.1| hypothetical protein GB2207_01717 [marine gamma proteobacterium
           HTCC2207]
          Length = 443

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 105/244 (43%), Gaps = 35/244 (14%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP TL+ F GQ       K   EA +     L  ++F GPPG+GKTTLA+++A     +
Sbjct: 18  MRPATLDGFYGQEHLIGLGKPLREAIEG--GTLHSMIFWGPPGVGKTTLAKIIAASADAH 75

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F S S  +       A++    E RD      +LF+DE+HR +   ++   P +ED  + 
Sbjct: 76  FESISAVLSGVKEIRASIAKATEQRDLRGRKTILFVDEVHRFNKSQQDAFLPFVEDGTV- 134

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR- 194
           + +G      S ++N                 N L  R  + + L   + E +KT++Q+ 
Sbjct: 135 VFIGATTENPSFELN-----------------NALLSRCRVYV-LKSLDNEQIKTVIQQA 176

Query: 195 ------GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA-EVAHAKTITREIAD 247
                 G     L + DEA   +A  + G  R A  LL    D A E      I R + +
Sbjct: 177 LSDQQSGLGERQLQLDDEALDLLASAADGDARRALNLLEIANDLASESGDLAAIDRRVLE 236

Query: 248 AALL 251
             L+
Sbjct: 237 QVLV 240


>gi|124024855|ref|YP_001013971.1| fused recombination factor protein RarA/unknown domain-containing
           protein [Prochlorococcus marinus str. NATL1A]
 gi|123959923|gb|ABM74706.1| Hypothetical protein NATL1_01421 [Prochlorococcus marinus str.
           NATL1A]
          Length = 734

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/145 (33%), Positives = 73/145 (50%), Gaps = 12/145 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+TL+EF GQ    +  ++   +  A  + + ++L  GPPG+GKTTLA+++A     +
Sbjct: 24  LRPQTLDEFVGQDHILAQGRLLRRSIVA--DKVGNLLLYGPPGVGKTTLARIIALNTLSH 81

Query: 82  FRSTSGPVIAKAGDLAA-------LLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F S     +A   DL +        L     R +LFIDE+HR +   ++ L P +E+  L
Sbjct: 82  F-SVVNAALAGIKDLRSEIESAIDRLNKFGKRTILFIDEVHRFNTAQQDALLPWVENGTL 140

Query: 135 DLM--VGEGPSARSVKINLSRFTLI 157
            L+    E P     K  LSR  L 
Sbjct: 141 TLIGATTENPYFEVNKALLSRSRLF 165


>gi|42525535|ref|NP_970633.1| recombination factor protein RarA [Treponema denticola ATCC 35405]
 gi|41815546|gb|AAS10514.1| ATPase, AAA family [Treponema denticola ATCC 35405]
          Length = 441

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 65/119 (54%), Gaps = 10/119 (8%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           S +RP +L+E+ GQ        +   A +A  + L  ++F GPPG GKTTLA+V+A    
Sbjct: 21  SRMRPISLDEYIGQEHIIGKGCLLRRAIQA--DRLSSLIFFGPPGTGKTTLARVIANTTK 78

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131
            NF S +  V+A    +   +TN E+       + +LF+DE+HR +   ++ L P +E+
Sbjct: 79  SNFLSLNA-VLAGVQQIREAVTNAEENKKLYNRKTILFVDEVHRWNKSQQDALLPWVEN 136


>gi|310640104|ref|YP_003944862.1| aaa atpase central domain protein [Paenibacillus polymyxa SC2]
 gi|309245054|gb|ADO54621.1| AAA ATPase central domain protein [Paenibacillus polymyxa SC2]
          Length = 442

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 71/135 (52%), Gaps = 10/135 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ LEEF GQ       KV  E  +   + +  ++F GPPG+GKTTLA+++A +    
Sbjct: 21  VRPQNLEEFVGQKHLLEPGKVLREMIEN--DQVSSMIFWGPPGVGKTTLAKIIANQTQSK 78

Query: 82  FRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F   S  V +   D+ +++   E      ++ +LFIDEIHR +   ++   P +E   + 
Sbjct: 79  FIDFSA-VTSGIKDIRSVMKEAEGNRQLGEKTLLFIDEIHRFNKAQQDAFLPYVEKGSI- 136

Query: 136 LMVGEGPSARSVKIN 150
           +++G      S ++N
Sbjct: 137 ILIGATTENPSFEVN 151


>gi|313886300|ref|ZP_07820026.1| recombination factor protein RarA [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312924245|gb|EFR35028.1| recombination factor protein RarA [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 439

 Score = 62.8 bits (151), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 78/148 (52%), Gaps = 22/148 (14%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP+TLEE+ GQ   V A + L+V +E        +  ++  GPPG+GKTTLA+++++ +
Sbjct: 12  MRPKTLEEYVGQSHLVGANAPLRVMLERGH-----IPSMILWGPPGVGKTTLARLLSQMM 66

Query: 79  GVNFRSTSGPVIAKAGDL-----------AALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127
                S S  V +   D+           + L +  + R +LFIDEIHR S   ++ L  
Sbjct: 67  QCRCYSLSA-VGSGVADVRKTLQEAKEAQSGLFSQHQGRPILFIDEIHRFSKSQQDSLLA 125

Query: 128 AMEDFQLDLM--VGEGPSARSVKINLSR 153
           A+E   + L+    E PS + ++  LSR
Sbjct: 126 AVEQGVVTLIGATTENPSFQVIRPLLSR 153


>gi|113954265|ref|YP_731698.1| recombination factor protein RarA/unknown domain fusion protein
           [Synechococcus sp. CC9311]
 gi|113881616|gb|ABI46574.1| ATPase [Synechococcus sp. CC9311]
          Length = 733

 Score = 62.8 bits (151), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 74/145 (51%), Gaps = 12/145 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP +LEEF GQ    +  ++   A  A  + + +++  GPPG+GKTTLA+++A      
Sbjct: 24  LRPTSLEEFAGQNAILAEGRLLRRAIAA--DRVGNLILHGPPGVGKTTLARIIATHTRAQ 81

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F S +  V+A   DL   +   ++       R +LFIDE+HR +   ++ L P +E+  L
Sbjct: 82  FSSLNA-VLAGVKDLREQVDAAKERLERHGLRTILFIDEVHRFNSAQQDALLPWVENGTL 140

Query: 135 DLM--VGEGPSARSVKINLSRFTLI 157
            L+    E P     K  +SR  L 
Sbjct: 141 TLIGATTENPYFEVNKALVSRSRLF 165


>gi|148927772|ref|ZP_01811204.1| AAA ATPase, central domain protein [candidate division TM7
           genomosp. GTL1]
 gi|147886884|gb|EDK72422.1| AAA ATPase, central domain protein [candidate division TM7
           genomosp. GTL1]
          Length = 390

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 107/238 (44%), Gaps = 39/238 (16%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+TL +  GQ +     ++     K +      ++  GPPG GKTTLA+++A+E+  +
Sbjct: 10  MRPQTLTDVIGQRQLLGENQILRHIVKNKQPV--SLILWGPPGSGKTTLARIIAKEVEAD 67

Query: 82  FRSTSGPVIAKAGDLAALLT------NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F   S  V A   D+  ++       NL+ R +LF+DEIHR +   ++   P +E   + 
Sbjct: 68  FIELSA-VTAGKADITQVVERARQNRNLKMRTILFVDEIHRFNKAQQDAFLPHVESGLIT 126

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           L+    E PS   +   LSR       +RV L+  PL               ED+ TI++
Sbjct: 127 LIGATTENPSFEVITPLLSR-------SRV-LVLEPLDK-------------EDITTIIK 165

Query: 194 RGAKLTGLA--VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
           +  K       VT +A   +A  S G  RIA   L    D AE      IT EI   A
Sbjct: 166 KSLKKLKATKRVTPKALEYLAELSSGDARIALGNLELALDMAE-----KITPEIVKKA 218


>gi|309810782|ref|ZP_07704588.1| recombination factor protein RarA [Dermacoccus sp. Ellin185]
 gi|308435262|gb|EFP59088.1| recombination factor protein RarA [Dermacoccus sp. Ellin185]
          Length = 457

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 53/152 (34%), Positives = 71/152 (46%), Gaps = 14/152 (9%)

Query: 22  LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTLEE  GQ E     S L+  IE     A  +  +L+ GPPG GKTTLA + A   
Sbjct: 31  MRPRTLEEVRGQGEVLKPGSPLRRLIEGQAGAAGPMSAILW-GPPGTGKTTLAHLAANSA 89

Query: 79  GVNFRSTSGPVIAKAGDL-------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
              F   S  + A   D+          L       VLF+DEIHR S   ++ L P +E+
Sbjct: 90  ERRFVELSA-ITAGVKDVRQAMEEAGRHLAMYGRSTVLFLDEIHRFSKAQQDALLPGVEN 148

Query: 132 FQLDLMVG--EGPSARSVKINLSRFTLIAATT 161
             + L+    E PS   +   LSR  L+  T+
Sbjct: 149 RTVILVAATTENPSFSVIAPLLSRSVLVTLTS 180


>gi|304384951|ref|ZP_07367297.1| replication-associated recombination protein A [Pediococcus
           acidilactici DSM 20284]
 gi|304329145|gb|EFL96365.1| replication-associated recombination protein A [Pediococcus
           acidilactici DSM 20284]
          Length = 439

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 73/152 (48%), Gaps = 8/152 (5%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           R+G L  N        + +RP  L+EF GQ       K+  E  +   + L  ++F GPP
Sbjct: 2   RQGSLFENKFNNTPLANRVRPSNLDEFVGQEHLLGPGKILREIIEN--DQLSSMIFWGPP 59

Query: 64  GLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
           G+GKTTLAQ++A +    F + S        I K    A L   +  + ++F+DEIHR +
Sbjct: 60  GVGKTTLAQIIANKTNSKFLTFSAVDSSISKIKKIMQQAELDREIGQKTLVFVDEIHRFN 119

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKIN 150
              ++   P +E   + +++G      S ++N
Sbjct: 120 KSQQDAFLPYVEKGSI-ILIGATTENPSFEVN 150


>gi|319405871|emb|CBI79503.1| ATPase, AAA family [Bartonella sp. AR 15-3]
          Length = 439

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 105/234 (44%), Gaps = 39/234 (16%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEA---LDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPR L E  GQ     N  +  E   +R  A      ++F GPPG GKTT+A+++A E 
Sbjct: 24  MRPRFLHEVVGQ-----NHLIGAEGFLSRMAASGSFSSMIFWGPPGTGKTTIARLLALET 78

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDF 132
              F   S  +     +L  +      R       +LFIDEIHR +   ++     MED 
Sbjct: 79  NFAFEQVSA-IFTGISELKKIFEVARARLMSGCQTLLFIDEIHRFNRAQQDSFLSFMEDG 137

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            + ++VG      S ++N       A  +RV +LT    D             E L+ ++
Sbjct: 138 TI-ILVGATTENPSFELN------AALLSRVRILTFHTHDN------------ESLEILL 178

Query: 193 QRGAKLTGLAVT-DEAACEIAMR-SRGTPRIAGRL---LRRVRDFAEVAHAKTI 241
           +R  K+ G A+  D+ A EI +R S G  R A  L   + RV    EV +AKT+
Sbjct: 179 KRAEKMEGRALPLDDQAREILIRMSDGDARAALTLAEEIWRVAQSEEVFNAKTL 232


>gi|154148052|ref|YP_001406390.1| recombination factor protein RarA [Campylobacter hominis ATCC
           BAA-381]
 gi|153804061|gb|ABS51068.1| ATPase, AAA family [Campylobacter hominis ATCC BAA-381]
          Length = 392

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 97/223 (43%), Gaps = 50/223 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP  +++ +GQ E  +  + FI     + E + + +F GP G GKTTLA+V+A EL   F
Sbjct: 8   RPDKIDDISGQHEIKAIFREFI-----KKEKIPNSIFFGPAGSGKTTLAKVLANELNYTF 62

Query: 83  RSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
                  + K  D+  +L   E+   + ++FIDEIHRLS   +EIL   +E+        
Sbjct: 63  YELDASNL-KVEDIRKILNMHENSLYKPLIFIDEIHRLSKNQQEILLIPLEN-------- 113

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRF----GIPIRLNFYEIE-----DLKT 190
                        +  +I ATT      NP   +F    GI  R  F+E +     DL  
Sbjct: 114 ------------QKAVIIGATTE-----NP---QFVLTSGIRSRCMFFEFKALTNADLCE 153

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
           + ++  K     +  EA   +   S G  R    LL    DFA
Sbjct: 154 LFEKVQKSLNFTIDKEAKNYLISSSGGDARAMFNLL----DFA 192


>gi|226311479|ref|YP_002771373.1| hypothetical protein BBR47_18920 [Brevibacillus brevis NBRC 100599]
 gi|226094427|dbj|BAH42869.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 452

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 65/117 (55%), Gaps = 10/117 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+T+++  GQ    +  K+   A +A  + +  V+F GPPG GKTTLA+V+AR    +
Sbjct: 24  MRPQTIQDVIGQSHILAPGKLLRRAIEA--DQVSSVIFYGPPGTGKTTLAKVIARTTRTH 81

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDV-------LFIDEIHRLSIIVEEILYPAMED 131
           F S    V A   D+  ++   ++R V       LF+DEIHR +   ++ L P +E+
Sbjct: 82  F-SELNAVTAGVADIRKVVDAAKERLVMDSQRTTLFVDEIHRFNKSQQDALLPYVEE 137


>gi|320106653|ref|YP_004182243.1| AAA ATPase central domain-containing protein [Terriglobus saanensis
           SP1PR4]
 gi|319925174|gb|ADV82249.1| AAA ATPase central domain protein [Terriglobus saanensis SP1PR4]
          Length = 445

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 76/153 (49%), Gaps = 16/153 (10%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL+EF GQ         L++ +E     +     ++F GPPG GKTTLA++VAR  
Sbjct: 27  MRPRTLDEFAGQTHLVGKDGPLRLQLERDDPAS-----MIFWGPPGTGKTTLAKIVARMT 81

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
             +F   S  V++   ++  ++ + E       R +LFIDEIHR +   ++   P +E  
Sbjct: 82  QASFIEFSA-VMSGIKEIKQVMVDAEKAAAMGSRTILFIDEIHRFNKAQQDAFLPYVERG 140

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
            L L +G      S +IN +  +     T  GL
Sbjct: 141 TLRL-IGATTENPSFEINAALLSRCRVYTLRGL 172


>gi|224539375|ref|ZP_03679914.1| hypothetical protein BACCELL_04280 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519010|gb|EEF88115.1| hypothetical protein BACCELL_04280 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 425

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 76/147 (51%), Gaps = 18/147 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL+++ GQ   V   + L+  I+A +     +   +  GPPG+GKTTLAQ++A +L
Sbjct: 8   LRPKTLDDYIGQKHLVGPGAVLRKMIDAGR-----ISSFILWGPPGVGKTTLAQIIANKL 62

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V +   D+  ++   +          +LFIDEIHR S   ++ L  A+E 
Sbjct: 63  ETPFYTLSA-VTSGVKDVREVIDRAKSNRFFSQGSPILFIDEIHRFSKSQQDSLLGAVEQ 121

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156
             + L+    E PS   ++  LSR  L
Sbjct: 122 GTVTLIGATTENPSFEVIRPLLSRCQL 148


>gi|94499677|ref|ZP_01306214.1| hypothetical protein RED65_01550 [Oceanobacter sp. RED65]
 gi|94428431|gb|EAT13404.1| hypothetical protein RED65_01550 [Oceanobacter sp. RED65]
          Length = 443

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 64/120 (53%), Gaps = 13/120 (10%)

Query: 20  SLLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           S  RP+TL+++ GQ    ++   L+  IE+ +     L  ++F GPPG+GKTTLA ++A 
Sbjct: 17  SRTRPQTLDDYAGQKHLLADGKPLRKVIESGR-----LHSMIFWGPPGVGKTTLAMILAN 71

Query: 77  ELGVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            +   F S S  +     I  A D A +    +   +LF+DE+HR +   ++   P +ED
Sbjct: 72  YVNAQFISVSAVMDGVKEIRAAVDKARMAQQQDRPSLLFVDEVHRFNKSQQDAFLPYVED 131


>gi|332829214|gb|EGK01878.1| hypothetical protein HMPREF9455_02026 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 422

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 49/144 (34%), Positives = 74/144 (51%), Gaps = 18/144 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPRTL+E+ GQ   V   + L+  IE+ +     +   L  GPPG+GKTTLAQ++A  L
Sbjct: 9   LRPRTLDEYIGQKHLVGEGAILRKMIESGR-----IPSFLLWGPPGVGKTTLAQIIANTL 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLSIIVEEILYPAMED 131
              F + S  + +   D+  ++   +          +LFIDEIHR S   ++ L  A+E 
Sbjct: 64  DTPFYTLSA-INSGVKDVREVIEQAKKSQFFNTKSPILFIDEIHRFSKSQQDSLLNAVET 122

Query: 132 FQLDLM--VGEGPSARSVKINLSR 153
             + L+    E PS   ++  LSR
Sbjct: 123 GVITLIGATTENPSFEVIRPLLSR 146


>gi|325970918|ref|YP_004247109.1| ATPase AAA [Spirochaeta sp. Buddy]
 gi|324026156|gb|ADY12915.1| AAA ATPase central domain protein [Spirochaeta sp. Buddy]
          Length = 727

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 63/117 (53%), Gaps = 10/117 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRTL+E+ GQ       ++   A +A  + L  V+F GPPG GKTTLA+V+A     +
Sbjct: 22  MRPRTLDEYIGQDAIIGAGRLLRRAIQA--DQLSSVIFYGPPGTGKTTLARVIANTTKRH 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131
           F ST   V++   +L   +     R        +LFIDE+HR +   ++ L P +E+
Sbjct: 80  F-STLNAVLSGVKELRYEIEEARQRLELYNRGTILFIDEVHRWNKSQQDALLPWVEN 135


>gi|294784987|ref|ZP_06750275.1| ATPase, AAA family [Fusobacterium sp. 3_1_27]
 gi|294486701|gb|EFG34063.1| ATPase, AAA family [Fusobacterium sp. 3_1_27]
          Length = 407

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 97/230 (42%), Gaps = 41/230 (17%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            L  +N    +     LRP++LE+F GQ +      V           L + +F GPPG 
Sbjct: 2   NLFQKNYKNVEPLAYKLRPKSLEDFVGQEKLLGKDGVITRLI--LNSTLSNSIFYGPPGC 59

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLT----NLE---DRDVLFIDEIHRLS 118
           GK++L ++++  L  NF   +    A   D+  ++     N+E    R +LF+DEIHR +
Sbjct: 60  GKSSLGEIISNTLDCNFEKLNATT-ASVSDIRNVVETARRNIELYNKRTILFLDEIHRFN 118

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIP 177
              ++ L    ED  L                    TLI ATT      NP  +    + 
Sbjct: 119 KNQQDALLSYTEDGTL--------------------TLIGATTE-----NPYYNINNALL 153

Query: 178 IRLNFYEI-----EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
            R+  +E      ED+  ++ +G     ++++D+    I   S+G  RIA
Sbjct: 154 SRVMVFEFKALTNEDILKLINKGLNFLNISMSDKIKEIIVDISQGDSRIA 203


>gi|170726827|ref|YP_001760853.1| recombination factor protein RarA [Shewanella woodyi ATCC 51908]
 gi|169812174|gb|ACA86758.1| AAA ATPase central domain protein [Shewanella woodyi ATCC 51908]
          Length = 443

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 117/262 (44%), Gaps = 35/262 (13%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP  L ++ GQ         L+  +EA +A +     ++F GPPG GKTTLA++VA   
Sbjct: 19  MRPEELSQYIGQSHLLGEGKPLRKALEAGRAHS-----MMFWGPPGTGKTTLAELVANYA 73

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131
             +    S  V +   ++   + + ++       R +LF+DE+HR +   ++   P +ED
Sbjct: 74  NAHVERISA-VTSGVKEIRTAIEHAKNVAESRGQRTLLFVDEVHRFNKSQQDAFLPFIED 132

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
             + + +G      S +IN      + +  RV L+     D   + +     ++E     
Sbjct: 133 GTV-IFIGATTENPSFEIN----NALLSRARVYLIKKLTNDEIVLIVNQALLDVE----- 182

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE-IADAAL 250
             RG     L + D  A ++A    G  R A  L+  + D   VA  ++ T E I + A 
Sbjct: 183 --RGLGKRKLTIPDAVANKLANVCDGDARKALNLIELMSDM--VADGESFTEEMIVEVAG 238

Query: 251 LRLAIDKMGFDQLDLRYLTMIA 272
            +LA    GFD+   +Y  +I+
Sbjct: 239 QQLA----GFDKNGDQYYDLIS 256


>gi|322435979|ref|YP_004218191.1| AAA ATPase central domain protein [Acidobacterium sp. MP5ACTX9]
 gi|321163706|gb|ADW69411.1| AAA ATPase central domain protein [Acidobacterium sp. MP5ACTX9]
          Length = 445

 Score = 62.4 bits (150), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 114/255 (44%), Gaps = 29/255 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPR L+E+ GQ   +     L++ IE     +     ++F GPPG+GKTTLA+++A++ 
Sbjct: 25  MRPRDLDEYAGQQHLLGVGKPLRLAIERDDPAS-----MIFWGPPGVGKTTLAKIIAQKT 79

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
             +F   S  V++   ++  ++   E       R +LF+DEIHR +   ++   P +E  
Sbjct: 80  QASFIEFSA-VLSGIKEIKNVMVEAEKASQFGSRTILFVDEIHRFNKAQQDAFLPYVERG 138

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            + L +G      S +IN +    + +  RV  L    +D     +R    + E      
Sbjct: 139 TIRL-IGATTENPSFEINAA----LLSRCRVYTLQPLSEDEVIALLRRALADSE------ 187

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
             G   +G+   ++A   IA  + G  R A   L      A      TIT+ +A  A+ R
Sbjct: 188 -YGLGESGVEADEDALASIAAYASGDARTALNALEVAAQLATGRGETTITKPLAAEAMQR 246

Query: 253 --LAIDKMGFDQLDL 265
             L  DK G    D+
Sbjct: 247 RMLLYDKKGEQHYDI 261


>gi|329965400|ref|ZP_08302324.1| ATPase, AAA family [Bacteroides fluxus YIT 12057]
 gi|328522192|gb|EGF49306.1| ATPase, AAA family [Bacteroides fluxus YIT 12057]
          Length = 423

 Score = 62.4 bits (150), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 76/147 (51%), Gaps = 18/147 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL+++ GQ   V   + L+  I+A +     +   +  GPPG+GKTTLAQ++A +L
Sbjct: 8   LRPKTLDDYIGQKHLVGPGAVLRKMIDAGR-----ISSFILWGPPGVGKTTLAQIIANKL 62

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V +   D+  ++          +   +LFIDEIHR S   ++ L  A+E 
Sbjct: 63  DTPFYTLSA-VTSGVKDVRDVIERAKSNRFFSQSSPILFIDEIHRFSKSQQDSLLGAVEQ 121

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156
             + L+    E PS   ++  LSR  L
Sbjct: 122 GTVTLIGATTENPSFEVIRPLLSRCQL 148


>gi|325847794|ref|ZP_08170016.1| ATPase, AAA family [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325480812|gb|EGC83865.1| ATPase, AAA family [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 443

 Score = 62.4 bits (150), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 76/153 (49%), Gaps = 17/153 (11%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  +E+F GQ       K+     K+  + +   +F GPPG+GKTTLA+++++   + 
Sbjct: 22  MRPENIEDFLGQDHLLGEGKIIRRMIKS--DRIYSSIFYGPPGVGKTTLAKIISKSTNMA 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F   S  V +   DL   +   +D       + +LFIDEIHR +   ++ L P +ED  +
Sbjct: 80  FEKVSA-VASGISDLKKKIEIAKDNLKYENKKTILFIDEIHRFNKSQQDYLLPFVEDSTI 138

Query: 135 DLMVG---EGPSARSVKINLSR---FTLIAATT 161
            +++G   E P     K  +SR   F L A T 
Sbjct: 139 -ILIGATTENPYFEVNKALISRMYVFELKAHTN 170


>gi|318040549|ref|ZP_07972505.1| recombination factor protein RarA/unknown domain fusion protein
           [Synechococcus sp. CB0101]
          Length = 745

 Score = 62.4 bits (150), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 66/117 (56%), Gaps = 10/117 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPR+L++F GQ E     ++   A  A  + + +++  GPPG+GKTTLA+++A     +
Sbjct: 37  LRPRSLDDFQGQEEILGPGRLLRRAIHA--DRVGNLILYGPPGVGKTTLARIIAASTRAH 94

Query: 82  FRSTSGPVIAKAGDLAALLTN----LED---RDVLFIDEIHRLSIIVEEILYPAMED 131
           F S +  V+A   DL + +      LE    R  LFIDE+HR +   ++ L P +E+
Sbjct: 95  FSSLNA-VLAGVKDLRSEVDEARRRLEQHGLRSFLFIDEVHRFNSAQQDALLPWVEN 150


>gi|148241495|ref|YP_001226652.1| recombination factor protein RarA/unknown domain fusion protein
           [Synechococcus sp. RCC307]
 gi|147849805|emb|CAK27299.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [Synechococcus sp. RCC307]
          Length = 719

 Score = 62.4 bits (150), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 67/123 (54%), Gaps = 10/123 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPR+L+EF GQ       ++   A  A  + L  ++  GPPG GKTTLA+++A     +
Sbjct: 25  LRPRSLDEFIGQDAILGPGRLLRRAIAA--DRLGSLILHGPPGTGKTTLARIIANTTRCH 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F S +  V+A   DL A +   ++       R +LFIDE+HR +   ++ L P +E+  +
Sbjct: 83  FSSLNA-VLAGIKDLRAEVEQAQERLGRHGLRTLLFIDEVHRFNTSQQDALLPWVENGTV 141

Query: 135 DLM 137
            L+
Sbjct: 142 TLI 144


>gi|308270409|emb|CBX27021.1| Replication-associated recombination protein A [uncultured
           Desulfobacterium sp.]
          Length = 456

 Score = 62.4 bits (150), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 73/149 (48%), Gaps = 12/149 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR L EF GQ    +     I  A  + +    +L+ GPPG GKTTLA+++ARE    
Sbjct: 27  MRPRNLNEFAGQEHVVAE-GTLIRHAFEKDQVFSMILW-GPPGCGKTTLARIIARETSSY 84

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F   S  V++   ++ A++   ++       R +LF+DEIHR +   ++     +E   +
Sbjct: 85  FMHFSA-VLSGVKEIRAVIEEAKNQLKLFRKRSILFVDEIHRFNKAQQDAFLHHVESGLI 143

Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATT 161
            L+    E PS   +   LSR  +I   T
Sbjct: 144 TLIGATTENPSFEVISPLLSRCRVITLKT 172


>gi|242211508|ref|XP_002471592.1| predicted protein [Postia placenta Mad-698-R]
 gi|220729364|gb|EED83240.1| predicted protein [Postia placenta Mad-698-R]
          Length = 380

 Score = 62.4 bits (150), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 69/143 (48%), Gaps = 13/143 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP +L+EF GQ        + +    + A     ++F GPPG GKTTLA+++A+     
Sbjct: 11  LRPSSLDEFVGQPHLTGPGSLLMHLLGSGATG--SMIFWGPPGCGKTTLARLLAKRTDAI 68

Query: 82  FRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           F+  S           V+ +A  + AL      R +LF+DE+HR +   ++I  P +E  
Sbjct: 69  FKELSATDSGISDVRAVVEEAKGVLALTGRQAVRTILFLDEVHRFNKAQQDIFLPFLEQG 128

Query: 133 QLDLM--VGEGPSARSVKINLSR 153
            L L+    E PS +     +SR
Sbjct: 129 HLQLIGATTENPSFKLTGALISR 151


>gi|255008670|ref|ZP_05280796.1| recombination factor protein RarA [Bacteroides fragilis 3_1_12]
 gi|313146404|ref|ZP_07808597.1| recombination factor protein RarA [Bacteroides fragilis 3_1_12]
 gi|313135171|gb|EFR52531.1| recombination factor protein RarA [Bacteroides fragilis 3_1_12]
          Length = 423

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 76/147 (51%), Gaps = 18/147 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL+++ GQ   V   + L+  I+A +     +   +  GPPG+GKTTLAQ++A +L
Sbjct: 8   LRPKTLDDYIGQKHLVGPGAILRKMIDAGR-----ISSFILWGPPGVGKTTLAQIIANKL 62

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V +   D+  ++   +          +LFIDEIHR S   ++ L  A+E 
Sbjct: 63  ETPFYTLSA-VTSGVKDVREVIDRAKSNKFFTQSSPILFIDEIHRFSKSQQDSLLGAVEH 121

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156
             + L+    E PS   ++  LSR  L
Sbjct: 122 GTVTLIGATTENPSFEVIRPLLSRCQL 148


>gi|296162943|ref|ZP_06845721.1| AAA ATPase central domain protein [Burkholderia sp. Ch1-1]
 gi|295886797|gb|EFG66637.1| AAA ATPase central domain protein [Burkholderia sp. Ch1-1]
          Length = 437

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 47/129 (36%), Positives = 65/129 (50%), Gaps = 16/129 (12%)

Query: 21  LLRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           LLRP+TL+EF GQ   +     L++  EA K     L   +  GPPG+GKTTL ++ A  
Sbjct: 16  LLRPKTLDEFVGQRHLLGPGKPLRLAFEAGK-----LHSFILWGPPGVGKTTLGRLAASA 70

Query: 78  LGVNFRSTSGPVIAKAGDL-------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
               F + S  V+A   D+        A L N     VLF+DEIHR +   ++ L P +E
Sbjct: 71  TDSRFIAISA-VLAGVKDIRQAIDEAQAELDNHGRSTVLFVDEIHRFNKAQQDALLPHVE 129

Query: 131 DFQLDLMVG 139
              L L+ G
Sbjct: 130 SGLLTLVGG 138


>gi|319937217|ref|ZP_08011624.1| ATPase [Coprobacillus sp. 29_1]
 gi|319807583|gb|EFW04176.1| ATPase [Coprobacillus sp. 29_1]
          Length = 442

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 77/149 (51%), Gaps = 11/149 (7%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           L +N SQE    S LRP+TL ++ GQ       K+  +  +   + +  ++F GPPG+GK
Sbjct: 6   LFQNQSQEPL-ASRLRPQTLSDYVGQKHLIGQGKILWQLIEH--DQISSMIFWGPPGVGK 62

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIV 121
           TTLA+++A      F   S  V +   D+ A++   ++      R ++F+DEIHR +   
Sbjct: 63  TTLARIIANCTQSEFIDFSA-VTSGIKDIKAVMKQAQEKQMMGIRTIVFVDEIHRFNKAQ 121

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKIN 150
           ++   P +E   + +++G      S +IN
Sbjct: 122 QDAFLPYVEQGSI-ILIGATTENPSFEIN 149


>gi|221215313|ref|ZP_03588278.1| ATPase, AAA family [Burkholderia multivorans CGD1]
 gi|221164745|gb|EED97226.1| ATPase, AAA family [Burkholderia multivorans CGD1]
          Length = 437

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 47/129 (36%), Positives = 65/129 (50%), Gaps = 16/129 (12%)

Query: 21  LLRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           LLRP+TL+EF GQ   +     L++  EA K     L   +  GPPG+GKTTL ++ A  
Sbjct: 16  LLRPKTLDEFVGQRHLLGPGKPLRLAFEAGK-----LHSFILWGPPGVGKTTLGRLAASA 70

Query: 78  LGVNFRSTSGPVIAKAGDL-------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
               F + S  V+A   D+        A L N     VLF+DEIHR +   ++ L P +E
Sbjct: 71  TDSRFIAISA-VLAGVKDIRQAIDEAQAELDNHGRSTVLFVDEIHRFNKAQQDALLPHVE 129

Query: 131 DFQLDLMVG 139
              L L+ G
Sbjct: 130 SGLLTLVGG 138


>gi|134095226|ref|YP_001100301.1| recombination factor protein RarA [Herminiimonas arsenicoxydans]
 gi|133739129|emb|CAL62178.1| ATPase, AAA family protein [Herminiimonas arsenicoxydans]
          Length = 437

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 47/129 (36%), Positives = 65/129 (50%), Gaps = 16/129 (12%)

Query: 21  LLRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           LLRP+TL+EF GQ   +     L++  EA K     L   +  GPPG+GKTTL ++ A  
Sbjct: 16  LLRPKTLDEFVGQRHLLGPGKPLRLAFEAGK-----LHSFILWGPPGVGKTTLGRLAASA 70

Query: 78  LGVNFRSTSGPVIAKAGDL-------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
               F + S  V+A   D+        A L N     VLF+DEIHR +   ++ L P +E
Sbjct: 71  TDSRFIAISA-VLAGVKDIRQAIDEAQAELDNHGRSTVLFVDEIHRFNKAQQDALLPHVE 129

Query: 131 DFQLDLMVG 139
              L L+ G
Sbjct: 130 SGLLTLVGG 138


>gi|15889208|ref|NP_354889.1| recombination factor protein RarA [Agrobacterium tumefaciens str.
           C58]
 gi|15157031|gb|AAK87674.1| ATPase, AAA family protein [Agrobacterium tumefaciens str. C58]
          Length = 438

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 70/138 (50%), Gaps = 16/138 (11%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL E +GQ         L+  I++      +L  ++F GPPG GKTT+A++++ E 
Sbjct: 24  LRPKTLSEVSGQPHLTGEEGVLRRMIDSG-----SLGSMIFWGPPGTGKTTVARLLSGEA 78

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDF 132
           G+ F   S  + +   DL  +      R       +LF+DEIHR +   ++   P MED 
Sbjct: 79  GLAFEQISA-IFSGVADLKKVFEAARTRRMNGRQTLLFVDEIHRFNRAQQDSFLPVMEDG 137

Query: 133 QLDLMVGEGPSARSVKIN 150
            + ++VG      S ++N
Sbjct: 138 TI-ILVGATTENPSFELN 154


>gi|302391510|ref|YP_003827330.1| recombination protein MgsA [Acetohalobium arabaticum DSM 5501]
 gi|302203587|gb|ADL12265.1| Recombination protein MgsA [Acetohalobium arabaticum DSM 5501]
          Length = 439

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 67/130 (51%), Gaps = 15/130 (11%)

Query: 13  SQEDADISL-----LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           SQE+ D S      +RP TL++F GQ E     ++   A KA  + +  ++  GPPG GK
Sbjct: 8   SQEELDASAPLADRMRPTTLDDFFGQEEIVGPDRLLRRAIKA--DRIQSLILYGPPGTGK 65

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSII 120
           TTLA ++A      F   +  V +   D+  ++   ++R        +LFIDEIHR +  
Sbjct: 66  TTLAMIIANTTSSEFERLNA-VTSGIKDIREIIKQAKERRRMYQTKTILFIDEIHRFNKS 124

Query: 121 VEEILYPAME 130
            ++ L PA+E
Sbjct: 125 QQDALLPAVE 134


>gi|107102094|ref|ZP_01366012.1| hypothetical protein PaerPA_01003143 [Pseudomonas aeruginosa PACS2]
          Length = 425

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 47/129 (36%), Positives = 65/129 (50%), Gaps = 16/129 (12%)

Query: 21  LLRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           LLRP+TL+EF GQ   +     L++  EA K     L   +  GPPG+GKTTL ++ A  
Sbjct: 4   LLRPKTLDEFVGQRHLLGPGKPLRLAFEAGK-----LHSFILWGPPGVGKTTLGRLAASA 58

Query: 78  LGVNFRSTSGPVIAKAGDL-------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
               F + S  V+A   D+        A L N     VLF+DEIHR +   ++ L P +E
Sbjct: 59  TDSRFIAISA-VLAGVKDIRQAIDEAQAELDNHGRSTVLFVDEIHRFNKAQQDALLPHVE 117

Query: 131 DFQLDLMVG 139
              L L+ G
Sbjct: 118 SGLLTLVGG 126


>gi|265763268|ref|ZP_06091836.1| recombination factor protein RarA [Bacteroides sp. 2_1_16]
 gi|263255876|gb|EEZ27222.1| recombination factor protein RarA [Bacteroides sp. 2_1_16]
          Length = 423

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 76/147 (51%), Gaps = 18/147 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL+++ GQ   V   + L+  I+A +     +   +  GPPG+GKTTLAQ++A +L
Sbjct: 8   LRPKTLDDYIGQKHLVGPGAILRKMIDAGR-----ISSFILWGPPGVGKTTLAQIIANKL 62

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V +   D+  ++   +          +LFIDEIHR S   ++ L  A+E 
Sbjct: 63  ETPFYTLSA-VTSGVKDVREVIDRAKSNKFFTQSSPILFIDEIHRFSKSQQDSLLGAVEH 121

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156
             + L+    E PS   ++  LSR  L
Sbjct: 122 GTVTLIGATTENPSFEVIRPLLSRCQL 148


>gi|150865091|ref|XP_001384164.2| replication factor ATPase [Scheffersomyces stipitis CBS 6054]
 gi|149386347|gb|ABN66135.2| replication factor ATPase [Scheffersomyces stipitis CBS 6054]
          Length = 786

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 63/130 (48%), Gaps = 29/130 (22%)

Query: 22  LRPRTLEEFTGQVE-------ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           +RPR+L+E+ GQ         A +N          R   L  +L  GPPG+GKTT+A ++
Sbjct: 27  IRPRSLDEYIGQKHLIDPDNGAITNF--------MRLRYLPSMLLYGPPGVGKTTMASII 78

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNL--EDRD-----------VLFIDEIHRLSIIV 121
           A E G  F   S    A   DL  L T +  E+R            V+FIDEIHR ++  
Sbjct: 79  AEECGYVFVELSATA-ATVADLRDLSTTIMAENRKRASRGEEELKVVVFIDEIHRFTVSQ 137

Query: 122 EEILYPAMED 131
           ++ L P +E+
Sbjct: 138 QDFLLPYVEE 147


>gi|78485111|ref|YP_391036.1| recombination factor protein RarA [Thiomicrospira crunogena XCL-2]
 gi|78363397|gb|ABB41362.1| Recombination protein MgsA [Thiomicrospira crunogena XCL-2]
          Length = 453

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 100/231 (43%), Gaps = 43/231 (18%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL++F GQ         L    E+ +     +  ++F GPPG GKTTLA+++A++ 
Sbjct: 13  LRPQTLDDFVGQTHLLGKGRALSKMFESGR-----MHSMIFWGPPGTGKTTLARLIAKQS 67

Query: 79  GVNFRSTSGPV-----IAKAGDLAALL-TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
            + F + S  +     +  A + A L     +   +LF+DE+HR +   ++   P +ED 
Sbjct: 68  DLQFLNLSAVLDGVKEVRAAVEQAKLHRQQFQQGSLLFVDEVHRFNKAQQDAFLPFVED- 126

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGL--LTNPLQDRFGIPIRLNFYEIEDLKT 190
                                F  I ATT      L N L  R  + + L   + +DL+ 
Sbjct: 127 -------------------GTFIFIGATTENPSFELNNALLSRARVYV-LRSLDEDDLQQ 166

Query: 191 IVQRGAKLTG------LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
           ++ R  +L        L +  +A   +   S G  R    LL +  DFAEV
Sbjct: 167 VLNRATELLNQELSQPLRIEPDAQAALIQFSDGDARRLLNLLEQAVDFAEV 217


>gi|304382033|ref|ZP_07364585.1| replication-associated recombination protein A [Prevotella marshii
           DSM 16973]
 gi|304336787|gb|EFM03011.1| replication-associated recombination protein A [Prevotella marshii
           DSM 16973]
          Length = 430

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 74/147 (50%), Gaps = 18/147 (12%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP TLE++ GQ         L+  IEA +  +      +  GPPG+GKTTLAQ++A ++
Sbjct: 9   MRPSTLEDYIGQKHLVGEGGVLRRMIEAKRVSS-----FILWGPPGVGKTTLAQIIAHQM 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131
            V F + S  V +   D+  ++   +          +LFIDEIHR S   ++ L  A+E 
Sbjct: 64  EVPFYTLSA-VTSGVKDVREVIERAKSGRFFSQGSPILFIDEIHRFSKSQQDSLLGAVEQ 122

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156
             + L+    E PS   ++  LSR  L
Sbjct: 123 GVVTLIGATTENPSFEVIRPLLSRCQL 149


>gi|253566840|ref|ZP_04844292.1| recombination factor protein RarA [Bacteroides sp. 3_2_5]
 gi|251944403|gb|EES84892.1| recombination factor protein RarA [Bacteroides sp. 3_2_5]
 gi|301162894|emb|CBW22441.1| putative AAA family ATPase protein [Bacteroides fragilis 638R]
          Length = 423

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 76/147 (51%), Gaps = 18/147 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL+++ GQ   V   + L+  I+A +     +   +  GPPG+GKTTLAQ++A +L
Sbjct: 8   LRPKTLDDYIGQKHLVGPGAILRKMIDAGR-----ISSFILWGPPGVGKTTLAQIIANKL 62

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V +   D+  ++   +          +LFIDEIHR S   ++ L  A+E 
Sbjct: 63  ETPFYTLSA-VTSGVKDVREVIDRAKSNKFFTQSSPILFIDEIHRFSKSQQDSLLGAVEH 121

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156
             + L+    E PS   ++  LSR  L
Sbjct: 122 GTVTLIGATTENPSFEVIRPLLSRCQL 148


>gi|254442732|ref|ZP_05056208.1| ATPase, AAA family protein [Verrucomicrobiae bacterium DG1235]
 gi|198257040|gb|EDY81348.1| ATPase, AAA family protein [Verrucomicrobiae bacterium DG1235]
          Length = 496

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 62/112 (55%), Gaps = 5/112 (4%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPR+L E  GQ    +  K+     +A       +LF GPPG GKT++A+ +A E    
Sbjct: 80  LRPRSLSEVVGQEHILAPGKLLPRLVEANT--FGSLLFYGPPGCGKTSMAEAIAGETKSR 137

Query: 82  FRSTSGPV--IAKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAME 130
           F   +  +  +A+  ++  +   +ED+D VLFIDEIHR +   +++L P +E
Sbjct: 138 FVRINAVMSNVAELREILGIARRMEDKDTVLFIDEIHRFNKSQQDLLLPDVE 189


>gi|171911243|ref|ZP_02926713.1| ATPase, AAA family protein [Verrucomicrobium spinosum DSM 4136]
          Length = 466

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 62/117 (52%), Gaps = 12/117 (10%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR+++E+ GQ       K+   A  A  +    ++F GPPG+GKTTLA +++ E    
Sbjct: 43  MRPRSMDEYVGQEHILGEGKLLRRAIMA--DRFSSLIFYGPPGVGKTTLATIISNETHSR 100

Query: 82  FRSTSG--------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           F + SG         ++A A +    L  +    VLF+DEIHR +   +++L P +E
Sbjct: 101 FVTLSGVESNVAEIRMVADAAEKEERLNGIG--TVLFVDEIHRFNKSQQDVLLPHLE 155


>gi|317486968|ref|ZP_07945778.1| ATPase [Bilophila wadsworthia 3_1_6]
 gi|316921843|gb|EFV43119.1| ATPase [Bilophila wadsworthia 3_1_6]
          Length = 407

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 47/138 (34%), Positives = 65/138 (47%), Gaps = 11/138 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP  L  F GQ      L   +E  +     L  +L  GPPG GK+TLA ++AR  G N
Sbjct: 11  LRPSELALFVGQSHLAERLTTLLEGPR-----LPSLLLFGPPGCGKSTLALLLARARGGN 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VG 139
               S P   +AG L  L   L   D+L +DE+HR S   ++   P +E   L ++    
Sbjct: 66  VLRLSAP---EAG-LQQLRRQLTGVDILVLDELHRFSKAQQDFFLPLLESGDLTMIATTT 121

Query: 140 EGPSARSVKINLSRFTLI 157
           E PS    +  LSR  ++
Sbjct: 122 ENPSFSVTRQLLSRLHVL 139


>gi|60681434|ref|YP_211578.1| recombination factor protein RarA [Bacteroides fragilis NCTC 9343]
 gi|60492868|emb|CAH07643.1| putative AAA family ATPase protein [Bacteroides fragilis NCTC 9343]
          Length = 423

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 76/147 (51%), Gaps = 18/147 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL+++ GQ   V   + L+  I+A +     +   +  GPPG+GKTTLAQ++A +L
Sbjct: 8   LRPKTLDDYIGQKHLVGPGAILRKMIDAGR-----ISSFILWGPPGVGKTTLAQIIANKL 62

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V +   D+  ++   +          +LFIDEIHR S   ++ L  A+E 
Sbjct: 63  ETPFYTLSA-VTSGVKDVREVIDRAKSNKFFTQSSPILFIDEIHRFSKSQQDSLLGAVEH 121

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156
             + L+    E PS   ++  LSR  L
Sbjct: 122 GTVTLIGATTENPSFEVIRPLLSRCQL 148


>gi|53713173|ref|YP_099165.1| recombination factor protein RarA [Bacteroides fragilis YCH46]
 gi|52216038|dbj|BAD48631.1| putative AAA family ATPase [Bacteroides fragilis YCH46]
          Length = 423

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 76/147 (51%), Gaps = 18/147 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL+++ GQ   V   + L+  I+A +     +   +  GPPG+GKTTLAQ++A +L
Sbjct: 8   LRPKTLDDYIGQKHLVGPGAILRKMIDAGR-----ISSFILWGPPGVGKTTLAQIIANKL 62

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V +   D+  ++   +          +LFIDEIHR S   ++ L  A+E 
Sbjct: 63  ETPFYTLSA-VTSGVKDVREVIDRAKSNKFFTQSSPILFIDEIHRFSKSQQDSLLGAVEH 121

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156
             + L+    E PS   ++  LSR  L
Sbjct: 122 GTVTLIGATTENPSFEVIRPLLSRCQL 148


>gi|221485041|gb|EEE23331.1| werner helicase interacting protein, putative [Toxoplasma gondii
           GT1]
          Length = 586

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 101/246 (41%), Gaps = 50/246 (20%)

Query: 22  LRPRTLEEFTGQVEAC-----SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           LRP +LEE+ GQ   C      +++  +EA       L  ++  GPPG GKTT+A +  R
Sbjct: 94  LRPASLEEYVGQ-RGCIQGGRGSIRELLEAGH-----LPSLILWGPPGCGKTTIALLAGR 147

Query: 77  ELGVNFRSTS--GPVIAKAGDLAA--------------LLTNLEDRDVLFIDEIHRLSII 120
            +G    + S   PV  K   +                L    + + VLF+DEIHR +  
Sbjct: 148 SVGKKNSALSLPPPVFKKMSAVTCGVNDVRKVVQEALTLRATTKQKTVLFLDEIHRFNKA 207

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++ L P +E   + L+    E PS    +  LSR        RV  L  PL +      
Sbjct: 208 QQDALLPHVETGTITLIGATTENPSFEVNRALLSR-------CRVCKL-EPLTE------ 253

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
                  EDL TI+QR AK   + +T+ A   I   + G  R A  +L         A+ 
Sbjct: 254 -------EDLTTILQRAAKEENVTITEAAVRVICRLADGDARRALNMLENAIHHERTANE 306

Query: 239 KTITRE 244
              T +
Sbjct: 307 NKATND 312


>gi|169334179|ref|ZP_02861372.1| hypothetical protein ANASTE_00575 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258896|gb|EDS72862.1| hypothetical protein ANASTE_00575 [Anaerofustis stercorihominis DSM
           17244]
          Length = 482

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 96/217 (44%), Gaps = 40/217 (18%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  L+EF GQ       K+     +A  + +  ++  GP G GKTTLA+++A +    
Sbjct: 66  MRPENLDEFFGQEHIVGEGKLLNRMIEA--DRISSIILFGPAGCGKTTLARIIANKTSSY 123

Query: 82  FRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F S +  V     D+  ++ N +        + +LFIDEIHR +   ++ L P++ED   
Sbjct: 124 FYSLNA-VTCGVKDVREIIENAKANLGMERKKSILFIDEIHRFNKSQQDALLPSVED--- 179

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGL--LTNPLQDRFGIPIRLNFYEIEDLKTIV 192
                                LI ATT      + +PL  R  +  +L   E ED++ I+
Sbjct: 180 -----------------GTIILIGATTENPFFEINSPLISRSTL-FKLKKIEKEDVRKII 221

Query: 193 -------QRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
                  +RG     + + +EA   +++ S G  R++
Sbjct: 222 ENTLKNKERGLGNYDIQIDEEAIDYLSLMSSGDARVS 258


>gi|325123959|gb|ADY83482.1| putative ATPase [Acinetobacter calcoaceticus PHEA-2]
          Length = 421

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 65/195 (33%), Positives = 96/195 (49%), Gaps = 36/195 (18%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPR L E  GQ   +   + L+  I+        L  ++F GPPG+GKTT+A ++A+ +
Sbjct: 12  LRPRDLSEIIGQDHLLGEHAPLRQMIDQGH-----LPSIIFWGPPGVGKTTIALLLAQAI 66

Query: 79  GVNFRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
              F S S           VIA++GD   LLT      V+FIDEIHR +   ++ L  A+
Sbjct: 67  DRPFVSLSALNTGVKELREVIAESGD---LLT-----PVVFIDEIHRFNKSQQDALLGAV 118

Query: 130 EDFQLDLM--VGEGPSARSVKINLSR---FTLIAATTRV--GLLTNPLQ-DRFGIPIRLN 181
           E  ++ L+    E PS       LSR   +TL +  +     LL N LQ DRF   ++  
Sbjct: 119 EKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDSEAIQTLLNNALQSDRF---LKER 175

Query: 182 FYEIEDLKTIVQRGA 196
           +  IE+   ++Q  A
Sbjct: 176 YIHIEEYDALIQFAA 190


>gi|315608969|ref|ZP_07883941.1| AAA family ATPase [Prevotella buccae ATCC 33574]
 gi|315249349|gb|EFU29366.1| AAA family ATPase [Prevotella buccae ATCC 33574]
          Length = 428

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/149 (35%), Positives = 76/149 (51%), Gaps = 22/149 (14%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL+++ GQ   V   + L+  IE  +     +   +  GPPG+GKTTLAQ++A  L
Sbjct: 8   MRPRTLDDYVGQQHLVSPGAVLRRMIEGGR-----ISSFILWGPPGVGKTTLAQIIANRL 62

Query: 79  GVNFRS----TSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
              F +    TSG      VI +AG       +L    +LFIDEIHR S   ++ L  A+
Sbjct: 63  KTPFYTLSAVTSGVKDVREVIERAGR-NRFFDSLS--PILFIDEIHRFSKSQQDSLLGAV 119

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTL 156
           E   + L+    E PS   ++  LSR  L
Sbjct: 120 EKGVVTLIGATTENPSFEVIRPLLSRCQL 148


>gi|282858602|ref|ZP_06267764.1| recombination factor protein RarA [Prevotella bivia JCVIHMP010]
 gi|282588606|gb|EFB93749.1| recombination factor protein RarA [Prevotella bivia JCVIHMP010]
          Length = 423

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/149 (35%), Positives = 75/149 (50%), Gaps = 22/149 (14%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL+++ GQ   V   + L+  IE+       +   +  GPPG+GKTTLAQ++A +L
Sbjct: 8   MRPRTLDQYIGQEHLVGKDAVLRRMIESGH-----ISSFILWGPPGVGKTTLAQIIAHKL 62

Query: 79  GVNFRS----TSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
              F +    TSG      VI KA        N     +LFIDEIHR S   ++ L  A+
Sbjct: 63  ETPFYTLSAVTSGVKDVREVIEKAKSNRFFSAN---SPILFIDEIHRFSKSQQDSLLGAV 119

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTL 156
           E   + L+    E PS   ++  LSR  L
Sbjct: 120 EKGIVTLIGATTENPSFEVIRPLLSRCQL 148


>gi|297620403|ref|YP_003708540.1| recombination factor RarA [Waddlia chondrophila WSU 86-1044]
 gi|297375704|gb|ADI37534.1| recombination factor RarA [Waddlia chondrophila WSU 86-1044]
          Length = 418

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 69/130 (53%), Gaps = 11/130 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ LEE  GQ     +   FI +A    + L  +L+ GPPG GKT++A++ A+   ++
Sbjct: 8   LRPKKLEEIWGQDHLLGD-GAFIPSAIRSQKPLSMILW-GPPGCGKTSIARLYAQAFAMD 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           FRS +  + +   DL  ++  ++         VLF+DEIHR +   ++   P +ED  + 
Sbjct: 66  FRSLNA-IFSGVADLKKIVHEVKQTPLFSQNCVLFVDEIHRFNKAQQDAFLPFIEDGTIV 124

Query: 136 LM--VGEGPS 143
           L+    E PS
Sbjct: 125 LIGATAENPS 134


>gi|34762825|ref|ZP_00143811.1| ATPase associated with chromosome architecture/replication
           [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
 gi|27887527|gb|EAA24611.1| ATPase associated with chromosome architecture/replication
           [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
          Length = 407

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 93/214 (43%), Gaps = 41/214 (19%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP++LE+F GQ +      V           L + +F GPPG GK++L ++++  L  N
Sbjct: 18  LRPKSLEDFVGQEKLLGKDGVITRLI--LNSTLSNSIFYGPPGCGKSSLGEIISNTLDCN 75

Query: 82  FRSTSGPVIAKAGDLAALLT----NLE---DRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F   +    A   D+  ++     N+E    R +LF+DEIHR +   ++ L    ED  L
Sbjct: 76  FEKLNATT-ASVSDIRNVVETARRNIELYNKRTILFLDEIHRFNKNQQDALLSYTEDGTL 134

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEI-----EDL 188
                               TLI ATT      NP  +    +  R+  +E      ED+
Sbjct: 135 --------------------TLIGATTE-----NPYYNINNALLSRVMVFEFKALTNEDI 169

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
             ++ +G     ++++D+    I   S+G  RIA
Sbjct: 170 LKLINKGLNFLNISMSDKIKEIIVDISQGDSRIA 203


>gi|330723792|gb|AEC46162.1| recombination factor protein RarA [Mycoplasma hyorhinis MCLD]
          Length = 405

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 58/109 (53%), Gaps = 9/109 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP  LEEF GQ    + L+  I+     +      +F GP G GKTTLA ++A+ L + 
Sbjct: 6   LRPENLEEFVGQPHLRTLLEKLIQTQDKSS-----FIFYGPSGTGKTTLAILLAKNLNLK 60

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           F   +  +  K+     LL  ++D  V+ IDE+HRL+   ++IL   +E
Sbjct: 61  FDIFNATIENKSD----LLQKIKDNQVVIIDEVHRLNKDKQDILLSHLE 105


>gi|126728193|ref|ZP_01744009.1| ATPase, AAA family protein [Sagittula stellata E-37]
 gi|126711158|gb|EBA10208.1| ATPase, AAA family protein [Sagittula stellata E-37]
          Length = 436

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/143 (34%), Positives = 73/143 (51%), Gaps = 17/143 (11%)

Query: 22  LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL E  GQ +     S L V + A      +L  ++F GPPG+GKTT+A+++A   
Sbjct: 23  LRPQTLAEVIGQEQVLGPESPLGVMLAAG-----SLGSIVFWGPPGVGKTTIARLLADAT 77

Query: 79  GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
            ++F   S      P + K  + A L        +LF+DEIHR +   ++   P MED  
Sbjct: 78  DLHFVQISAIFTGVPELRKVFEAAKLRRQQGHGTLLFVDEIHRFNKAQQDGFLPHMEDGT 137

Query: 134 LDLMVG---EGPSARSVKINLSR 153
           + L+VG   E PS    +  LSR
Sbjct: 138 I-LLVGATTENPSFELNRALLSR 159


>gi|26990707|ref|NP_746132.1| recombination factor protein RarA [Pseudomonas putida KT2440]
 gi|24985700|gb|AAN69596.1|AE016593_4 ATPase, AAA family [Pseudomonas putida KT2440]
 gi|313498109|gb|ADR59475.1| Recombination factor protein RarA [Pseudomonas putida BIRD-1]
          Length = 441

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 72/135 (53%), Gaps = 9/135 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP +L+E+ GQ    +  K   EA +    AL  ++F GPPG+GKTTLA+++A+    +
Sbjct: 17  LRPSSLDEYVGQEHLLARGKPLREALEQ--GALHSMIFWGPPGVGKTTLARLLAQFCDAH 74

Query: 82  FRSTSGPV-----IAKAGDLAALLT-NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F + S  +     I +A ++A         R +LF+DE+HR +   ++   P +ED  L 
Sbjct: 75  FETVSAVLAGVKEIRQAVEVAKQQAGQYGRRTILFVDEVHRFNKSQQDAFLPYVEDGTL- 133

Query: 136 LMVGEGPSARSVKIN 150
           L +G      S ++N
Sbjct: 134 LFIGATTENPSFELN 148


>gi|148547066|ref|YP_001267168.1| recombination factor protein RarA [Pseudomonas putida F1]
 gi|148511124|gb|ABQ77984.1| Recombination protein MgsA [Pseudomonas putida F1]
          Length = 441

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 72/135 (53%), Gaps = 9/135 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP +L+E+ GQ    +  K   EA +    AL  ++F GPPG+GKTTLA+++A+    +
Sbjct: 17  LRPSSLDEYVGQEHLLARGKPLREALEQ--GALHSMIFWGPPGVGKTTLARLLAQFCDAH 74

Query: 82  FRSTSGPV-----IAKAGDLAALLT-NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F + S  +     I +A ++A         R +LF+DE+HR +   ++   P +ED  L 
Sbjct: 75  FETVSAVLAGVKEIRQAVEVAKQQAGQYGRRTILFVDEVHRFNKSQQDAFLPYVEDGTL- 133

Query: 136 LMVGEGPSARSVKIN 150
           L +G      S ++N
Sbjct: 134 LFIGATTENPSFELN 148


>gi|330794089|ref|XP_003285113.1| hypothetical protein DICPUDRAFT_148953 [Dictyostelium purpureum]
 gi|325084939|gb|EGC38356.1| hypothetical protein DICPUDRAFT_148953 [Dictyostelium purpureum]
          Length = 743

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 70/138 (50%), Gaps = 15/138 (10%)

Query: 21  LLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           ++RP    +F GQ E   N   L +F      ++E+   ++  GPPG GKTTLA+++ ++
Sbjct: 263 IMRPTEFLDFIGQEELMHNSIILNLF------KSESPPSIILYGPPGCGKTTLAKIITKK 316

Query: 78  LGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
              N+   S        + +A D A        + +LFIDEIHR +   +++L PA+E  
Sbjct: 317 SNANYLELSAVGSGVKDVKEAIDKAKNSLMFGKKTILFIDEIHRYNKSQQDVLLPAIESG 376

Query: 133 QLDLMVGEGPSARSVKIN 150
            + +++G      S +IN
Sbjct: 377 TI-ILIGATTENPSFEIN 393


>gi|294141065|ref|YP_003557043.1| ATPase [Shewanella violacea DSS12]
 gi|293327534|dbj|BAJ02265.1| ATPase, AAA family [Shewanella violacea DSS12]
          Length = 443

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 121/262 (46%), Gaps = 35/262 (13%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP  LE++ GQ         L+  +EA +A +     ++F GPPG GKTTLA++VA   
Sbjct: 19  MRPEVLEQYIGQSHLLGEGKPLRKALEAGRAHS-----MVFWGPPGTGKTTLAELVAHYA 73

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131
             +    S  V +   ++ A + + ++       R +LF+DE+HR +   ++   P +ED
Sbjct: 74  NAHVERISA-VTSGVKEIRAAIEHAQNVAQSRGQRTLLFVDEVHRFNKSQQDAFLPFIED 132

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
             + + +G      S +IN      + +  RV L+     D     +R     I+D    
Sbjct: 133 GTV-IFIGATTENPSFEIN----NALLSRARVYLIKRLTNDEIIQIVRQAL--IDD---- 181

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE-IADAAL 250
            +RG     L + DE A ++A    G  R A  L+  + D   +A  ++ T + I + A 
Sbjct: 182 -ERGLGKRQLTIPDEVAEKLANVCDGDARKALNLIELMSDM--IADGESFTEQMIIEVAG 238

Query: 251 LRLAIDKMGFDQLDLRYLTMIA 272
            +LA    GFD+   ++  +I+
Sbjct: 239 QQLA----GFDKNGDQFYDLIS 256


>gi|227873104|ref|ZP_03991398.1| crossover junction endodeoxyribonuclease ATPase [Oribacterium sinus
           F0268]
 gi|227841085|gb|EEJ51421.1| crossover junction endodeoxyribonuclease ATPase [Oribacterium sinus
           F0268]
          Length = 421

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 60/116 (51%), Gaps = 8/116 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR+LEE  GQ       K+   +   R++ L  +LF GPPG GKT+LA+V+A     +
Sbjct: 22  MRPRSLEEVVGQEHILGKDKLL--SRLIRSDQLHSLLFFGPPGTGKTSLAKVIANSSKAD 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMED 131
           F   +     K     A+    E+      + +LF+DEIHR +   ++ L P +E+
Sbjct: 80  FIPINATTAGKKDMEEAVARAKENMGGYGRKTILFVDEIHRFNKAQQDYLLPHVEE 135


>gi|319651670|ref|ZP_08005797.1| ATPase [Bacillus sp. 2_A_57_CT2]
 gi|317396737|gb|EFV77448.1| ATPase [Bacillus sp. 2_A_57_CT2]
          Length = 421

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 91/213 (42%), Gaps = 41/213 (19%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRT++E  GQ    S  K+     +A+   L  ++  GPPG+GKT++A  +A      
Sbjct: 10  MRPRTIDEIIGQEHLVSEGKIIYRMVQAKQ--LSSMILYGPPGIGKTSIASAIAGSTKYA 67

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR+ +     K   ++ A    +  + +L +DE+HRL    ++ L P +E+         
Sbjct: 68  FRTLNAVTNNKKDMEVVAAEAKMSGKVILLLDEVHRLDKGKQDFLLPYLEN--------- 118

Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEI-----EDLKTIVQR 194
                         TLI ATT     +NP       I  R   +E+     +D+K  + R
Sbjct: 119 -----------GSITLIGATT-----SNPYHAINPAIRSRCQIFELKPLSADDIKKALTR 162

Query: 195 G--AKLTGLA-----VTDEAACEIAMRSRGTPR 220
               K  GL      VTD+A   +A  S G  R
Sbjct: 163 ALLDKERGLGNRQTEVTDDALTHLATASNGDVR 195


>gi|254485674|ref|ZP_05098879.1| ATPase, AAA family [Roseobacter sp. GAI101]
 gi|214042543|gb|EEB83181.1| ATPase, AAA family [Roseobacter sp. GAI101]
          Length = 435

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 71/137 (51%), Gaps = 14/137 (10%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL E  GQ +       L V +++      +L  ++F GPPG+GKTT+A+++A E 
Sbjct: 23  LRPKTLAEVIGQAQVLGPDGPLTVMLQSG-----SLGSLIFWGPPGVGKTTIARLLADET 77

Query: 79  GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
            ++F   S      P + K  + A +        +LF+DEIHR +   ++   P MED  
Sbjct: 78  DLHFVQISAIFSGVPELRKVFEAAKIRRQNGRGTLLFVDEIHRFNKAQQDGFLPHMEDGT 137

Query: 134 LDLMVGEGPSARSVKIN 150
           + L+VG      S ++N
Sbjct: 138 I-LLVGATTENPSFELN 153


>gi|332299790|ref|YP_004441711.1| AAA ATPase central domain protein [Porphyromonas asaccharolytica
           DSM 20707]
 gi|332176853|gb|AEE12543.1| AAA ATPase central domain protein [Porphyromonas asaccharolytica
           DSM 20707]
          Length = 439

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 77/148 (52%), Gaps = 22/148 (14%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP+TLEE+ GQ   V A + L+V +E        +  ++  GPPG+GKTTLA+++++ +
Sbjct: 12  MRPKTLEEYVGQSHLVGANAPLRVMLERGH-----IPSMILWGPPGVGKTTLARLLSQMM 66

Query: 79  GVNFRSTSGPVIAKAGDL-----------AALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127
                S S  V +   D+           + L +  + R +LFIDEIHR S   ++ L  
Sbjct: 67  QCRCYSLSA-VGSGVADVRKTLQEAKEAQSGLFSQHQGRPILFIDEIHRFSKSQQDSLLA 125

Query: 128 AMEDFQLDLM--VGEGPSARSVKINLSR 153
           A+E   + L+    E PS + +   LSR
Sbjct: 126 AVEQGVVTLIGATTENPSFQVIHPLLSR 153


>gi|294786969|ref|ZP_06752223.1| ATPase, AAA family [Parascardovia denticolens F0305]
 gi|315226608|ref|ZP_07868396.1| replication-associated recombination protein A [Parascardovia
           denticolens DSM 10105]
 gi|294485802|gb|EFG33436.1| ATPase, AAA family [Parascardovia denticolens F0305]
 gi|315120740|gb|EFT83872.1| replication-associated recombination protein A [Parascardovia
           denticolens DSM 10105]
          Length = 487

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 70/148 (47%), Gaps = 13/148 (8%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP +L++  GQ   +   S L+    A      A   ++  GPPG+GKTTLA + A E 
Sbjct: 24  MRPTSLDQVVGQGRVLGEGSPLRRLASAPSHSRTAPSSIILFGPPGVGKTTLAYIAAHES 83

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131
           G  F   S  VI    +L  +L     R        VLFIDE+HR S   ++ L PA+E+
Sbjct: 84  GRAFEELSA-VIDGVKELREVLARSRQRLVAEGKETVLFIDEVHRFSKSQQDALLPAVEN 142

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLI 157
             +  +    E PS   +   LSR  ++
Sbjct: 143 RDVTFIGATTENPSFSIISPLLSRSVVV 170


>gi|192360498|ref|YP_001983014.1| ATPase, AAA family domain-containing protein [Cellvibrio japonicus
           Ueda107]
 gi|190686663|gb|ACE84341.1| ATPase, AAA family domain protein [Cellvibrio japonicus Ueda107]
          Length = 447

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 72/273 (26%), Positives = 117/273 (42%), Gaps = 38/273 (13%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR L+++ GQ    +  K   EA   R + L  ++  GPPG+GKT+LA++ A +    
Sbjct: 19  MRPRNLDDYIGQEHLLAAGKPLREAI-TRGQ-LHSMILWGPPGVGKTSLAKLFAEQANAR 76

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F + S  V++   ++ A +   E        + +LF+DE+HR +   ++   P +ED   
Sbjct: 77  FETLSA-VMSGVKEIRAAVAAAEQERISTRRKTILFVDEVHRFNKSQQDAFLPYVEDGTF 135

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
            + +G      S ++N      + +  RV +L   LQ    I +      +    T  +R
Sbjct: 136 -IFIGATTENPSFELN----NALLSRCRVYVLRG-LQPEQLIQV------MRQALTDAER 183

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
           G   +GL V DE    +A  + G  R +  LL    D A+      +  E  D     LA
Sbjct: 184 GLGKSGLEVDDEVLNSLAQAADGDARKSLNLLEIAADLAQEQEGVRVINE--DVLREVLA 241

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISA 287
            D   FD+              GG +  E ISA
Sbjct: 242 ADVRRFDK--------------GGDIFYEQISA 260


>gi|146298174|ref|YP_001192765.1| recombination factor protein RarA [Flavobacterium johnsoniae UW101]
 gi|146152592|gb|ABQ03446.1| AAA ATPase, central domain protein [Flavobacterium johnsoniae
           UW101]
          Length = 425

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/144 (35%), Positives = 69/144 (47%), Gaps = 17/144 (11%)

Query: 22  LRPRTLEEFTGQVEACS-NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           +RPRTLE++  Q      N  +  + +K    +L   +F GPPG GKTTLAQ++A+E   
Sbjct: 9   IRPRTLEDYISQSHLVGPNGSLTQQISKGIIPSL---IFWGPPGTGKTTLAQIIAQESKR 65

Query: 81  NFRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            F   S           VI KA     L T      +LFIDEIHR S   ++ L  A+E 
Sbjct: 66  PFYELSAINSGVKDIRDVIEKAKQSGGLFT--AKNPILFIDEIHRFSKSQQDSLLAAVEK 123

Query: 132 FQLDLM--VGEGPSARSVKINLSR 153
             + L+    E PS   +   LSR
Sbjct: 124 GWITLIGATTENPSFEVIPALLSR 147


>gi|260432475|ref|ZP_05786446.1| recombination factor protein RarA [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260416303|gb|EEX09562.1| recombination factor protein RarA [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 437

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 93/201 (46%), Gaps = 32/201 (15%)

Query: 22  LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+ L +  GQ +     + L V + +      +L  ++F GPPG+GKTT+A+++A+E 
Sbjct: 24  LRPQALSDVIGQQQVLGPEAPLGVMLASG-----SLSSLIFWGPPGVGKTTIARLLAKET 78

Query: 79  GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
            ++F   S      P + K  + A L        +LF+DEIHR +   ++   P MED  
Sbjct: 79  DLHFEQISAIFTGVPDLKKVFEAAKLRRRNGKGTLLFVDEIHRFNKAQQDGFLPYMEDGT 138

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           + L+VG      S ++N       A  +R  +L             L   ++ DL+ + Q
Sbjct: 139 I-LLVGATTENPSFELN------AAVLSRAQVLV------------LERLDLADLERLTQ 179

Query: 194 RGAKLTGLAVTDEAACEIAMR 214
           R  K  G A+    A   A++
Sbjct: 180 RAEKELGKALPLTPAARDALQ 200


>gi|290968723|ref|ZP_06560261.1| recombination factor protein RarA [Megasphaera genomosp. type_1
           str. 28L]
 gi|290781376|gb|EFD93966.1| recombination factor protein RarA [Megasphaera genomosp. type_1
           str. 28L]
          Length = 439

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 78/149 (52%), Gaps = 20/149 (13%)

Query: 22  LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP TLEE  GQ +     + L+V IE      + +  +LF GP G+GKTTLA V+A E 
Sbjct: 25  MRPDTLEEIFGQEQLTGPGAFLRVMIEK-----DMVPSLLFYGPSGVGKTTLAHVIAAET 79

Query: 79  GVNFRSTSGPVIAKAGDLAALLTN-------LEDRDVLFIDEIHRLSIIVEEILYPAMED 131
              F + +  V++   DL  ++          + R ++FIDEIHR +   ++IL P +E+
Sbjct: 80  KCKFVNLNA-VMSGTADLRRVIETAKQDIQIYQKRTLVFIDEIHRFNKSQQDILLPHVEN 138

Query: 132 FQLDLMVGEGPSARSVKIN---LSRFTLI 157
             + +++G        ++N   LSR  +I
Sbjct: 139 GTI-ILIGATTENPYFEVNRPLLSRLRVI 166


>gi|212697090|ref|ZP_03305218.1| hypothetical protein ANHYDRO_01655 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675865|gb|EEB35472.1| hypothetical protein ANHYDRO_01655 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 443

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 76/153 (49%), Gaps = 17/153 (11%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  +E+F GQ       K+     K+  + +   +F GPPG+GKTTLA+++++   + 
Sbjct: 22  MRPDNIEDFLGQDHLLGEGKIIRRMIKS--DRIYSSIFYGPPGVGKTTLAKIISKSTNMA 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F   S  V +   DL   +   +D       + +LFIDEIHR +   ++ L P +ED  +
Sbjct: 80  FEKVSA-VASGISDLKKKIEIAKDNLKYENKKTILFIDEIHRFNKSQQDYLLPFVEDSTI 138

Query: 135 DLMVG---EGPSARSVKINLSR---FTLIAATT 161
            +++G   E P     K  +SR   F L A T 
Sbjct: 139 -ILIGATTENPYFEVNKALISRMYVFELKAHTN 170


>gi|121535958|ref|ZP_01667752.1| AAA ATPase, central domain protein [Thermosinus carboxydivorans
           Nor1]
 gi|121305450|gb|EAX46398.1| AAA ATPase, central domain protein [Thermosinus carboxydivorans
           Nor1]
          Length = 446

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 59/117 (50%), Gaps = 10/117 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR+L+EF GQ       +      KA    L  +L  GPPG GKTTLA ++A   G +
Sbjct: 22  MRPRSLDEFVGQQHLVGPGRFLRRMLKA--GTLPSLLLFGPPGTGKTTLAYLIANAAGCH 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131
           F   +  V A   D+   +   ++       R +LFIDEIHR +   ++ L P +ED
Sbjct: 80  FEKLNA-VAAGVADVRKQVEAAQERLKLYGQRTILFIDEIHRFNKGQQDALLPFVED 135


>gi|325273411|ref|ZP_08139666.1| recombination factor protein RarA [Pseudomonas sp. TJI-51]
 gi|324101456|gb|EGB99047.1| recombination factor protein RarA [Pseudomonas sp. TJI-51]
          Length = 441

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 71/135 (52%), Gaps = 9/135 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP  L+E+ GQ    +  K   EA +    AL  ++F GPPG+GKTTLA+++A+    +
Sbjct: 17  LRPSNLDEYVGQEHLLARGKPLREALEQ--GALHSMIFWGPPGVGKTTLARLLAQFCDAH 74

Query: 82  FRSTSGPV-----IAKAGDLAALLT-NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F + S  +     I +A ++A         R +LF+DE+HR +   ++   P +ED  L 
Sbjct: 75  FETVSAVLAGVKEIRQAVEVAKQQAGQYGRRTILFVDEVHRFNKSQQDAFLPYVEDGTL- 133

Query: 136 LMVGEGPSARSVKIN 150
           L +G      S ++N
Sbjct: 134 LFIGATTENPSFELN 148


>gi|221632458|ref|YP_002521679.1| recombination factor protein RarA [Thermomicrobium roseum DSM 5159]
 gi|221157227|gb|ACM06354.1| ATPase, aaa family [Thermomicrobium roseum DSM 5159]
          Length = 450

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 75/149 (50%), Gaps = 20/149 (13%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL+E  GQ         L+  IE      + L  ++  GPPG GKTTLA+++A+  
Sbjct: 23  MRPRTLDEVVGQEHVLGPGALLRSLIER-----DQLVSLILWGPPGCGKTTLARLIAKHT 77

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131
              F   S  V A   D+  ++    DR        ++FIDEIHR +   ++ L PA+ED
Sbjct: 78  RSAFVPLSA-VSASVADIRRVVQEASDRFAQHGQRTIVFIDEIHRFNRAQQDALLPAVED 136

Query: 132 FQLDLMVGEGPSARSVKIN---LSRFTLI 157
             + +++G      S +IN   LSR  ++
Sbjct: 137 GTI-VLIGATTENPSFEINAPLLSRCRVV 164


>gi|323344318|ref|ZP_08084544.1| AAA family ATPase [Prevotella oralis ATCC 33269]
 gi|323095047|gb|EFZ37622.1| AAA family ATPase [Prevotella oralis ATCC 33269]
          Length = 424

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 75/147 (51%), Gaps = 18/147 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL+E+ GQ   V   + L+  I+A +  +      +  GPPG+GKTTLAQ++A +L
Sbjct: 9   MRPRTLDEYVGQQHLVGEGAVLRKMIDAGRVSS-----FILWGPPGVGKTTLAQIIANKL 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V +   D+   +   +          +LFIDEIHR S   ++ L  A+E 
Sbjct: 64  ETPFYTLSA-VTSGVKDVRDAIERAKSNKFFNTASPILFIDEIHRFSKSQQDSLLGAVER 122

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156
             + L+    E PS   ++  LSR  L
Sbjct: 123 GVVTLIGATTENPSFEVIRPLLSRCQL 149


>gi|226227315|ref|YP_002761421.1| ATPase [Gemmatimonas aurantiaca T-27]
 gi|226090506|dbj|BAH38951.1| ATPase [Gemmatimonas aurantiaca T-27]
          Length = 459

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 63/211 (29%), Positives = 99/211 (46%), Gaps = 33/211 (15%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRTLEE+ GQ E    + + +  A +R + +D ++F GPPG+GKTTLA+++A+     
Sbjct: 25  MRPRTLEEYLGQ-EHLLAVGMPLREALSRGK-VDSMVFWGPPGVGKTTLARLLAQSTEAA 82

Query: 82  FRSTSGPV--IAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           F S S     +A+  ++ A      D     +LF+DEIHR +   ++   P +E   + L
Sbjct: 83  FVSFSAVSDGVARVREIVAEAERRRDGGRGTILFVDEIHRFNRAQQDAFLPHVETGTVVL 142

Query: 137 M--VGEGPSARSVKINLSRFTL-----IAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           +    E PS       LSR  +     I  +T  GL+   ++DR                
Sbjct: 143 IGATTENPSFALTGALLSRVRVMVLEAIPVSTLEGLVQRAVEDR---------------- 186

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPR 220
               RG    GL++ D+A   +A  S G  R
Sbjct: 187 ---DRGLGARGLSIDDDARHLLAESSDGDAR 214


>gi|237836221|ref|XP_002367408.1| ATPase, AAA family domain containing protein [Toxoplasma gondii
           ME49]
 gi|211965072|gb|EEB00268.1| ATPase, AAA family domain containing protein [Toxoplasma gondii
           ME49]
 gi|221505904|gb|EEE31539.1| werner helicase interacting protein, putative [Toxoplasma gondii
           VEG]
          Length = 1101

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 65/216 (30%), Positives = 93/216 (43%), Gaps = 51/216 (23%)

Query: 22  LRPRTLEEFTGQVEAC-----SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           LRP +LEE+ GQ   C      +++  +EA       L  ++  GPPG GKTT+A +  R
Sbjct: 609 LRPASLEEYVGQ-RGCIQGGRGSIRELLEAGH-----LPSLILWGPPGCGKTTIALLAGR 662

Query: 77  ELGVNFRSTS--GPVIAKAGDLAA--------------LLTNLEDRDVLFIDEIHRLSII 120
            +G    + S   PV  K   +                L    + + VLF+DEIHR +  
Sbjct: 663 SVGKKNSALSLPPPVFKKMSAVTCGVNDVRKVVQEALTLRATTKQKTVLFLDEIHRFNKA 722

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++ L P +E   + L+    E PS    +  LSR        RV  L  PL +      
Sbjct: 723 QQDALLPHVETGTITLIGATTENPSFEVNRALLSR-------CRVCKL-EPLTE------ 768

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMR 214
                  EDL TI+QR AK   + +T EAA  +  R
Sbjct: 769 -------EDLTTILQRAAKEENVTIT-EAAVRVICR 796


>gi|167034603|ref|YP_001669834.1| recombination factor protein RarA [Pseudomonas putida GB-1]
 gi|166861091|gb|ABY99498.1| AAA ATPase central domain protein [Pseudomonas putida GB-1]
          Length = 441

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 71/135 (52%), Gaps = 9/135 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP  L+E+ GQ    +  K   EA +    AL  ++F GPPG+GKTTLA+++A+    +
Sbjct: 17  LRPSNLDEYVGQEHLLARGKPLREALEQ--GALHSMIFWGPPGVGKTTLARLLAQFCDAH 74

Query: 82  FRSTSGPV-----IAKAGDLAALLT-NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F + S  +     I +A ++A         R +LF+DE+HR +   ++   P +ED  L 
Sbjct: 75  FETVSAVLAGVKEIRQAVEVAKQQAGQYGRRTILFVDEVHRFNKSQQDAFLPYVEDGTL- 133

Query: 136 LMVGEGPSARSVKIN 150
           L +G      S ++N
Sbjct: 134 LFIGATTENPSFELN 148


>gi|304385275|ref|ZP_07367620.1| AAA family ATPase [Pediococcus acidilactici DSM 20284]
 gi|304328482|gb|EFL95703.1| AAA family ATPase [Pediococcus acidilactici DSM 20284]
          Length = 425

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 62/130 (47%), Gaps = 4/130 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRTLEE  GQ       K+     KA+   L  ++  GPPG GKT++A  +A      
Sbjct: 8   MRPRTLEEVVGQKHLVGPGKIISRMVKAKR--LSSMILYGPPGTGKTSIASAIAGSTKYA 65

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR  +    +K    + A    +    VL +DEIHRL    ++ L P +E  Q+ +++G 
Sbjct: 66  FRMLNAATDSKKQLQIVAEEAKMSGTVVLLLDEIHRLDKTKQDFLLPHLESGQI-ILIGA 124

Query: 141 GPSARSVKIN 150
                 + IN
Sbjct: 125 TTENPYININ 134


>gi|152977760|ref|YP_001343389.1| recombination factor protein RarA [Actinobacillus succinogenes
           130Z]
 gi|150839483|gb|ABR73454.1| AAA ATPase central domain protein [Actinobacillus succinogenes
           130Z]
          Length = 439

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 68/138 (49%), Gaps = 16/138 (11%)

Query: 22  LRPRTLEEFTGQVEACSNLKVF---IEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP  LEEF GQ       KV    IE      + +  ++F GPPG+GKTTLAQ++A   
Sbjct: 20  LRPERLEEFAGQPHLLGEGKVLRRLIEN-----DQISSMIFWGPPGVGKTTLAQIIANST 74

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDF 132
              F   S  V +   D+ A++   E       + ++F+DEIHR +   ++   P +E  
Sbjct: 75  QAGFIEFSA-VTSGIKDIRAIMQQAEQNRRYGAKTIVFVDEIHRFNKAQQDAFLPFVEKG 133

Query: 133 QLDLMVGEGPSARSVKIN 150
            + +++G      S +IN
Sbjct: 134 SI-VLIGATTENPSFEIN 150


>gi|332297274|ref|YP_004439196.1| AAA ATPase central domain protein [Treponema brennaborense DSM
           12168]
 gi|332180377|gb|AEE16065.1| AAA ATPase central domain protein [Treponema brennaborense DSM
           12168]
          Length = 801

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 60/117 (51%), Gaps = 10/117 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRTL+E+ GQ       ++   A  A  + L   +F GPPG GKTTLA+V+A     N
Sbjct: 18  MRPRTLDEYIGQDHIVGKGRLLRRAIAA--DQLTSAIFYGPPGTGKTTLARVIANHTKSN 75

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131
           F  T   V+    ++   +   E        R +LF+DE+HR +   ++ L P +E+
Sbjct: 76  F-ITLNAVLTGVQNIRDSIAQAEQHYKLYGRRTILFVDEVHRWNRSQQDALLPWVEN 131


>gi|72383277|ref|YP_292632.1| recombination factor protein RarA/unknown domain fusion protein
           [Prochlorococcus marinus str. NATL2A]
 gi|72003127|gb|AAZ58929.1| Recombination protein MgsA [Prochlorococcus marinus str. NATL2A]
          Length = 734

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 73/145 (50%), Gaps = 12/145 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+TL+EF GQ    +  ++   +  A  + + ++L  GPPG+GKTTLA+++A     +
Sbjct: 24  LRPQTLDEFVGQDHILAQGRLLRRSIVA--DKVGNLLLYGPPGVGKTTLARIIALNTLSH 81

Query: 82  FRSTSGPVIAKAGDLAA-------LLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F S     +A   DL +        L     R +LFIDE+HR +   ++ L P +E+  L
Sbjct: 82  F-SVVNAALAGIKDLRSEIESAIDRLNKFGKRTILFIDEVHRFNTAQQDALLPWVENGTL 140

Query: 135 DLM--VGEGPSARSVKINLSRFTLI 157
            L+    E P     K  +SR  L 
Sbjct: 141 TLIGATTENPYFEVNKALVSRSRLF 165


>gi|312195527|ref|YP_004015588.1| AAA ATPase [Frankia sp. EuI1c]
 gi|311226863|gb|ADP79718.1| AAA ATPase central domain protein [Frankia sp. EuI1c]
          Length = 622

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 76/182 (41%), Gaps = 49/182 (26%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPR L+E  GQ   +   S L+  +E     +     V+  GPPG GKTTLA +V+R  
Sbjct: 64  LRPRGLDELVGQRHLLGPGSPLRRLVEGGGTTS-----VVLWGPPGTGKTTLAHIVSRAT 118

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED--------------------------------- 105
           G  FR  S  V A   D+ A++    D                                 
Sbjct: 119 GRRFRELSA-VTAGVKDVRAVIDEARDALSSSRSNQSRRMVREPGLFSDAAQAPGGEVPV 177

Query: 106 --RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG--EGPSARSVKINLSR---FTLIA 158
             R VLFIDE+HR +   ++ L PA+E   + L+    E PS   V   LSR   FTL  
Sbjct: 178 DLRTVLFIDEVHRFTRTQQDALLPAVERGWITLVAATTENPSFSVVAPLLSRSLLFTLTP 237

Query: 159 AT 160
            T
Sbjct: 238 LT 239


>gi|325475344|gb|EGC78529.1| AAA family ATPase [Treponema denticola F0402]
          Length = 441

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 65/119 (54%), Gaps = 10/119 (8%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           S +RP +L+E+ GQ        +   A +A  + L  ++F GPPG GKTTLA+V+A    
Sbjct: 21  SRMRPISLDEYIGQEHIIGKGCLLRRAIQA--DRLSSLIFFGPPGTGKTTLARVIANTTK 78

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131
            NF S +  V+A    +   ++N E+       + +LF+DE+HR +   ++ L P +E+
Sbjct: 79  SNFLSLNA-VLAGVQQIREAVSNAEENKKLYNRKTILFVDEVHRWNKSQQDALLPWVEN 136


>gi|281357852|ref|ZP_06244338.1| AAA ATPase central domain protein [Victivallis vadensis ATCC
           BAA-548]
 gi|281315799|gb|EFA99826.1| AAA ATPase central domain protein [Victivallis vadensis ATCC
           BAA-548]
          Length = 455

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/122 (35%), Positives = 65/122 (53%), Gaps = 8/122 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPR+L+E+ GQ    +  K+   A  A  +    V+  GPPG GKT+LA+V+AR     
Sbjct: 33  LRPRSLDEYIGQNHLLAPGKLLRRAIDA--DRFSSVILSGPPGTGKTSLAEVIARVSNSE 90

Query: 82  FRSTSGPVIAKAG---DLAALLTNLE---DRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F   SG   + A    ++A  +T       R +LF+DEIHR S   ++ L P +E+  + 
Sbjct: 91  FVRLSGVTSSVADVRKEIAQAVTRRRINGRRTILFVDEIHRFSRSQQDSLLPDVENGNVR 150

Query: 136 LM 137
           L+
Sbjct: 151 LI 152


>gi|291458146|ref|ZP_06597536.1| ATPase, AAA family [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291419229|gb|EFE92948.1| ATPase, AAA family [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 430

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 60/123 (48%), Gaps = 10/123 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  L+E  GQ E      +   A  A  + L  ++F GPPG GKTTLA+++AR     
Sbjct: 22  MRPENLDELVGQQEIAGKGHLLYRAIAA--DKLSSLIFYGPPGTGKTTLARLIARTTKAE 79

Query: 82  FRSTSGPVIAKAGDLAAL-------LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F   +     K  ++  +       L     R +LF+DEIHR +   ++ L P +ED  L
Sbjct: 80  FCQLNATSAGKK-EMEEIVERAKKNLGGYGKRTILFVDEIHRFNKAQQDYLLPYVEDGSL 138

Query: 135 DLM 137
            L+
Sbjct: 139 ILI 141


>gi|149915873|ref|ZP_01904397.1| ATPase, AAA family protein [Roseobacter sp. AzwK-3b]
 gi|149810196|gb|EDM70042.1| ATPase, AAA family protein [Roseobacter sp. AzwK-3b]
          Length = 437

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 70/138 (50%), Gaps = 16/138 (11%)

Query: 22  LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPR L +  GQ +     + L   +EA      +L  ++F GPPG+GKTT+A+++A E 
Sbjct: 24  LRPRKLADVIGQAQLLGPEAPLGAMLEAG-----SLSSLVFWGPPGVGKTTIARLLADET 78

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDF 132
            ++F   S  + +   +L  +      R       +LF+DEIHR +   ++   P MED 
Sbjct: 79  DLHFVQISA-IFSGVAELKKVFEQARHRRANGQGTLLFVDEIHRFNKAQQDSFLPHMEDG 137

Query: 133 QLDLMVGEGPSARSVKIN 150
            L L+VG      S ++N
Sbjct: 138 TL-LLVGATTENPSFELN 154


>gi|123965322|ref|YP_001010403.1| recombination factor protein RarA [Prochlorococcus marinus str. MIT
           9515]
 gi|123199688|gb|ABM71296.1| putative ATPase, AAA family [Prochlorococcus marinus str. MIT 9515]
          Length = 428

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 64/215 (29%), Positives = 102/215 (47%), Gaps = 40/215 (18%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+TL++F GQ     N  +   A     + + +++F GPPG+GKTTL ++++     N
Sbjct: 22  LRPKTLDDFFGQESILGNNSLLRNAI--LNDKVGNIIFSGPPGVGKTTLIEIISS----N 75

Query: 82  FRST---SGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131
            RS       V++   +L   + N ++R        +LFIDE+HR + I ++ L P++E+
Sbjct: 76  TRSALIKLNAVLSSIKELRTEIANAKERLLSSNRKTILFIDEVHRFTSIQQDALLPSIEN 135

Query: 132 FQLDLM--VGEGPSARSVKINLSR---FTLIAATTRVGLLTNPLQDRFGIPIRLNFYE-I 185
             +  +    E P     K  +SR   F+LI       L TN L  R  I   +N+Y  +
Sbjct: 136 GTITFIGATTENPFFAVNKALISRARVFSLIP------LNTNDL--RKIIEKVVNYYACL 187

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPR 220
           ED K I           +T+EA   +   S G  R
Sbjct: 188 EDPKAI----------EITEEAISHLIKYSGGDAR 212


>gi|158313527|ref|YP_001506035.1| recombination factor protein RarA [Frankia sp. EAN1pec]
 gi|158108932|gb|ABW11129.1| AAA ATPase central domain protein [Frankia sp. EAN1pec]
          Length = 465

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 61/119 (51%), Gaps = 16/119 (13%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPR L+E  GQ   +   S L+  +E     +     V+  GPPG GKTTLA +V+R  
Sbjct: 22  LRPRGLDEVVGQRHLLAEGSPLRRLVEGGGTTS-----VVLWGPPGTGKTTLAHIVSRAT 76

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAME 130
              FR  S  V A   D+ A++    +       R VLFIDE+HR +   ++ L P++E
Sbjct: 77  RRRFRELSA-VTAGVKDVRAVVDEARETLSMSGVRTVLFIDEVHRFTRTQQDALLPSVE 134


>gi|270291003|ref|ZP_06197226.1| ATPase [Pediococcus acidilactici 7_4]
 gi|270280399|gb|EFA26234.1| ATPase [Pediococcus acidilactici 7_4]
          Length = 425

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 62/130 (47%), Gaps = 4/130 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRTLEE  GQ       K+     KA+   L  ++  GPPG GKT++A  +A      
Sbjct: 8   MRPRTLEEVVGQKHLVGPGKIISRMVKAKR--LSSMILYGPPGTGKTSIASAIAGSTKYA 65

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR  +    +K    + A    +    VL +DEIHRL    ++ L P +E  Q+ +++G 
Sbjct: 66  FRMLNAATDSKKQLQIVAEEAKMSGTVVLLLDEIHRLDKTKQDFLLPHLESGQI-ILIGA 124

Query: 141 GPSARSVKIN 150
                 + IN
Sbjct: 125 TTENPYININ 134


>gi|325262409|ref|ZP_08129146.1| ATPase, AAA family [Clostridium sp. D5]
 gi|324032241|gb|EGB93519.1| ATPase, AAA family [Clostridium sp. D5]
          Length = 439

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 86/171 (50%), Gaps = 18/171 (10%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           S LRP TL++F GQ       KV  +  +   + +  ++F GPPG+GKTTLA ++A +  
Sbjct: 21  SRLRPDTLKDFVGQEHLLGKGKVLRQLIER--DQISSMIFWGPPGVGKTTLASIIAGQTK 78

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
            +F + S  V +   ++  ++   E       R VLF+DEIHR +   ++   P +E   
Sbjct: 79  ADFINFSA-VTSGIKEIKEVMNQAEQSRRMGIRTVLFVDEIHRFNKAQQDAFLPFVEKGS 137

Query: 134 LDLMVGEGPSARSVKIN---LSR---FTLIAATTR--VGLLTNPLQDRFGI 176
           + +++G      S ++N   LSR   F L A   +  V LL++ L +  G 
Sbjct: 138 I-ILIGATTENPSFEVNAALLSRCRVFVLKALEEKDLVKLLSHALANPSGF 187


>gi|283779444|ref|YP_003370199.1| ATPase AAA [Pirellula staleyi DSM 6068]
 gi|283437897|gb|ADB16339.1| AAA ATPase central domain protein [Pirellula staleyi DSM 6068]
          Length = 441

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 60/117 (51%), Gaps = 10/117 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ LEEF GQ       K+     KA  + L  VLF GPPG GKTTLA+++A      
Sbjct: 22  MRPQRLEEFAGQQHFLGEGKLLRRLLKA--DRLGSVLFYGPPGCGKTTLARLLAVASKRR 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131
           F   S  V +   +L  +L    D       R +LF+DEIHR S   ++ L P +E+
Sbjct: 80  FVQLSA-VTSGVKELREMLEKARDELSTGGFRTLLFVDEIHRYSKSQQDALLPDVEE 135


>gi|254449265|ref|ZP_05062712.1| ATPase, AAA family [gamma proteobacterium HTCC5015]
 gi|198261120|gb|EDY85418.1| ATPase, AAA family [gamma proteobacterium HTCC5015]
          Length = 443

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 70/136 (51%), Gaps = 11/136 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPR LE++ GQ    +  K   +A ++  + L  ++F GPPG GKTTLA+++A      
Sbjct: 24  LRPRRLEDYCGQQHLIAPGKPLRKAIES--DQLHSMIFWGPPGTGKTTLARLIAEYCDAE 81

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F + S  V++   D+ A +   + R        VLF+DE+HR +   ++   P +ED  +
Sbjct: 82  FMTLSA-VLSGVKDIRAAVDEAKLRRRQDGRATVLFVDEVHRFNKSQQDAFLPHIEDGTI 140

Query: 135 DLMVGEGPSARSVKIN 150
              VG      S ++N
Sbjct: 141 -FFVGATTENPSFELN 155


>gi|313827647|gb|EFS65361.1| recombination factor protein RarA [Propionibacterium acnes
           HL063PA2]
          Length = 446

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/147 (34%), Positives = 72/147 (48%), Gaps = 18/147 (12%)

Query: 9   SRNVSQEDADISL-LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           S +    DA +++ LRPRT++E  GQ   +   S L+   E   A +     V   GPPG
Sbjct: 22  SLDTPNPDAPLAVRLRPRTIDEIVGQQHLLTPGSPLRRLAEGTGAMS-----VFLWGPPG 76

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFIDEIHRLS 118
           +GKTT+A VV+      F   S  V A   D+   L        L    VLF+DE+HR S
Sbjct: 77  VGKTTIASVVSHATNRRFVEISA-VTAGVKDIRRELDTARRQLALGQPTVLFVDEVHRFS 135

Query: 119 IIVEEILYPAMEDFQLDLMVG--EGPS 143
              +++L PA+E+  + L+    E PS
Sbjct: 136 KAQQDVLLPAVENRTVTLIAATTENPS 162


>gi|15893618|ref|NP_346967.1| recombination factor protein RarA [Clostridium acetobutylicum ATCC
           824]
 gi|15023171|gb|AAK78307.1|AE007547_4 ATPase related to the helicase subunit of Holliday junction
           resolvase [Clostridium acetobutylicum ATCC 824]
 gi|325507740|gb|ADZ19376.1| recombination factor protein RarA [Clostridium acetobutylicum EA
           2018]
          Length = 443

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 72/267 (26%), Positives = 121/267 (45%), Gaps = 53/267 (19%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPR L ++ GQ   +E    L+  +E      +++  ++  GPPG+GKTTLA ++A   
Sbjct: 21  MRPRNLSDYIGQEHILEKGKALRNMLEK-----DSITSMILWGPPGVGKTTLAMIIASTT 75

Query: 79  GVNF----RSTSGPVIAKAGDLAALLTNLED-----RDVLFIDEIHRLSIIVEEILYPAM 129
             NF     +TSG  I +  D+  ++   +D     R +LFIDEIHR +   ++   P +
Sbjct: 76  KCNFVEFSAATSG--IKEIKDI--MIKAEKDRLFGIRTLLFIDEIHRFNKSQQDTFLPHV 131

Query: 130 EDFQLDLMVGEGPSARSVKIN---LSR---FTL--IAATTRVGLLTNPLQDRFGIPIRLN 181
           E   + +++G      S ++N   LSR   F L  ++    V LL N L D         
Sbjct: 132 EKGDI-ILIGATTENPSFEVNSALLSRCRVFVLKPLSNNDIVKLLKNALTD--------- 181

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA-KT 240
                       RG K   + ++++    IA+ S G  R A  +L      +++ H   T
Sbjct: 182 -----------TRGFKNKNIQISEDLLTLIAVYSNGDARTALNVLEMAVLSSKLEHGVVT 230

Query: 241 ITREIADAALLRLAI--DKMGFDQLDL 265
           I + I +  +   A+  DK G +  +L
Sbjct: 231 INKGILEDCMQNKALIYDKNGEEHYNL 257


>gi|227821784|ref|YP_002825754.1| recombination factor protein RarA [Sinorhizobium fredii NGR234]
 gi|227340783|gb|ACP25001.1| ATPase, AAA family protein [Sinorhizobium fredii NGR234]
          Length = 436

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/138 (32%), Positives = 70/138 (50%), Gaps = 16/138 (11%)

Query: 22  LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPRTL E TGQ     A   L   I +      +L  ++F GPPG GKTT+A++++ E 
Sbjct: 23  LRPRTLAEVTGQEHLTGADGALTRMIASG-----SLGSMIFWGPPGTGKTTVARLLSGEA 77

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDF 132
           G+ F   S  + +   DL  +  +   R       +LF+DEIHR +   ++   P ME+ 
Sbjct: 78  GLAFEQISA-IFSGVADLKKVFESARARRMSGRQTLLFVDEIHRFNRAQQDSFLPVMENG 136

Query: 133 QLDLMVGEGPSARSVKIN 150
            + ++VG      S ++N
Sbjct: 137 TV-ILVGATTENPSFELN 153


>gi|288929609|ref|ZP_06423453.1| ATPase, AAA family [Prevotella sp. oral taxon 317 str. F0108]
 gi|288329114|gb|EFC67701.1| ATPase, AAA family [Prevotella sp. oral taxon 317 str. F0108]
          Length = 425

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 76/147 (51%), Gaps = 18/147 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPR+L+++ GQ   V   + L+  IE  +     +   +  GPPG+GKTTLAQ+VA++L
Sbjct: 9   MRPRSLDDYVGQKHLVGPNAVLRNMIEGGR-----IPSFILWGPPGVGKTTLAQIVAKKL 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V +   D+  ++   +          +LFIDEIHR S   ++ L  A+E 
Sbjct: 64  ETPFYTLSA-VTSGVKDVREVIEKAKGGRFFGSHSPILFIDEIHRFSKSQQDSLLGAVEK 122

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156
             + L+    E PS   ++  LSR  L
Sbjct: 123 GIVTLIGATTENPSFEVIRPLLSRCQL 149


>gi|227903996|ref|ZP_04021801.1| crossover junction endodeoxyribonuclease ATPase [Lactobacillus
           acidophilus ATCC 4796]
 gi|227868387|gb|EEJ75808.1| crossover junction endodeoxyribonuclease ATPase [Lactobacillus
           acidophilus ATCC 4796]
          Length = 478

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 65/119 (54%), Gaps = 3/119 (2%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           L+RP+TL E  GQ    +  K   +  K     L  +L  GPPG GKTTLA V+++ L +
Sbjct: 59  LMRPKTLGEMVGQNHLLAKGKPLYQIIKEHI--LLSLLLWGPPGCGKTTLAYVMSQTLRL 116

Query: 81  NFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
            F   +  +  K+     +  + ++  VL +DEIHRL+  +++ L P +E+  + L+VG
Sbjct: 117 PFEKFNASIQNKSQLQKLIQKHPDESFVLLLDEIHRLTKPIQDYLLPYLENGHV-LLVG 174


>gi|119470156|ref|ZP_01612922.1| recombination protein [Alteromonadales bacterium TW-7]
 gi|119446577|gb|EAW27851.1| recombination protein [Alteromonadales bacterium TW-7]
          Length = 447

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 96/225 (42%), Gaps = 37/225 (16%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKA-RAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           +RP TL+E+ GQ    S+ K   +A  A R  +L   +  GPPG+GKTTLAQ++A     
Sbjct: 19  MRPTTLDEYIGQQHLLSSDKPLHQAIVAGRCHSL---ILWGPPGVGKTTLAQIIANHADA 75

Query: 81  NFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
                S  V A   D+   +T   D       R ++F+DE+HR +   ++   P +ED  
Sbjct: 76  ELIQMSA-VTAGVKDIRDSVTQAHDNLQSRGQRTLMFVDEVHRFNKSQQDAFLPHIEDGT 134

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
             + VG      S  +N      I +  RV +L + LQ+              DL T+++
Sbjct: 135 F-IFVGATTENPSFALN----NAILSRARVYVLKS-LQE-------------SDLYTVIE 175

Query: 194 RGAK------LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R  +         + + D A   +   S G  R    LL +  D 
Sbjct: 176 RALEQDEQLNQKNIVIADNAKKALCQASGGDARKVLNLLEQAVDL 220


>gi|150396236|ref|YP_001326703.1| recombination factor protein RarA [Sinorhizobium medicae WSM419]
 gi|150027751|gb|ABR59868.1| AAA ATPase central domain protein [Sinorhizobium medicae WSM419]
          Length = 436

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/138 (32%), Positives = 70/138 (50%), Gaps = 16/138 (11%)

Query: 22  LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPRTL E TGQ     A   L   I +      +L  ++F GPPG GKTT+A++++ E 
Sbjct: 23  LRPRTLGEVTGQEHLTGADGGLTRMIASG-----SLGSMIFWGPPGTGKTTVARLLSGEA 77

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDF 132
           G+ F   S  + +   DL  +  +   R       +LF+DEIHR +   ++   P +ED 
Sbjct: 78  GLAFEQISA-IFSGVADLKKVFESARARRMSGRQTLLFVDEIHRFNRAQQDSFLPVIEDG 136

Query: 133 QLDLMVGEGPSARSVKIN 150
            + ++VG      S ++N
Sbjct: 137 TV-ILVGATTENPSFELN 153


>gi|198276725|ref|ZP_03209256.1| hypothetical protein BACPLE_02924 [Bacteroides plebeius DSM 17135]
 gi|198270250|gb|EDY94520.1| hypothetical protein BACPLE_02924 [Bacteroides plebeius DSM 17135]
          Length = 424

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/149 (36%), Positives = 76/149 (51%), Gaps = 22/149 (14%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP+TL+E+ GQ   V   + L+  IEA +     +   +  GPPG+GKTTLAQ+VA   
Sbjct: 9   MRPKTLDEYIGQKHLVGEGAVLRRMIEAGR-----ISSFILWGPPGVGKTTLAQIVANRQ 63

Query: 79  GVNFRS----TSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
            V F +    TSG      VI KA    A     +   +LFIDEIHR S   ++ L  A+
Sbjct: 64  EVPFYTLSAVTSGVKEVREVIEKA---KANRFFSQQSPILFIDEIHRFSKSQQDSLLGAV 120

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTL 156
           E   + L+    E PS   ++  LSR  L
Sbjct: 121 ETGVVTLIGATTENPSFEVIRPLLSRCQL 149


>gi|184159941|ref|YP_001848280.1| recombination factor protein RarA [Acinetobacter baumannii ACICU]
 gi|183211535|gb|ACC58933.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [Acinetobacter baumannii ACICU]
 gi|322509857|gb|ADX05311.1| Putative ATPase [Acinetobacter baumannii 1656-2]
          Length = 421

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/195 (33%), Positives = 96/195 (49%), Gaps = 36/195 (18%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPR L E  GQ   +   + L+  I+        L  ++F GPPG+GKTT+A ++A+ +
Sbjct: 12  LRPRDLSEIIGQDHLLGEHAPLRQMIDQGH-----LPSIIFWGPPGVGKTTIALLLAQAI 66

Query: 79  GVNFRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
              F S S           VIA++GD   LLT      V+FIDEIHR +   ++ L  A+
Sbjct: 67  DRPFVSLSALNTGVKELREVIAESGD---LLT-----PVVFIDEIHRFNKSQQDALLGAV 118

Query: 130 EDFQLDLM--VGEGPSARSVKINLSR---FTLIAATTRV--GLLTNPLQ-DRFGIPIRLN 181
           E  ++ L+    E PS       LSR   +TL +  +     LL N LQ DRF   ++  
Sbjct: 119 EKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDSEAIQTLLNNALQNDRF---LKER 175

Query: 182 FYEIEDLKTIVQRGA 196
           +  IE+   ++Q  A
Sbjct: 176 YIHIEEYDALLQFAA 190


>gi|120437189|ref|YP_862875.1| recombination factor protein RarA [Gramella forsetii KT0803]
 gi|117579339|emb|CAL67808.1| AAA family ATPase [Gramella forsetii KT0803]
          Length = 424

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/146 (34%), Positives = 70/146 (47%), Gaps = 21/146 (14%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TLE++  Q   +     LK  I+        +  ++F GPPG+GKTTLA ++A E 
Sbjct: 9   LRPKTLEDYLSQQHLIGKNGALKQQIQQG-----IIPSMIFWGPPGVGKTTLANIIATES 63

Query: 79  GVNFRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           G  F + S           VI KA     L T      +LFIDEIHR S   ++ L  A+
Sbjct: 64  GRPFFTLSAISSGVKDVREVIEKAKKSEGLFTT--KSPILFIDEIHRFSKSQQDSLLGAV 121

Query: 130 EDFQLDLM--VGEGPSARSVKINLSR 153
           E   + L+    E PS   +   LSR
Sbjct: 122 EKGWVTLIGATTENPSFEVISALLSR 147


>gi|114778010|ref|ZP_01452910.1| ATPase [Mariprofundus ferrooxydans PV-1]
 gi|114551616|gb|EAU54169.1| ATPase [Mariprofundus ferrooxydans PV-1]
          Length = 448

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 91/211 (43%), Gaps = 34/211 (16%)

Query: 22  LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP  L++  GQ +   A S     +   +  +      +F GPPG+GKTTLA V+A   
Sbjct: 26  IRPAVLQDVAGQPDLTAADSWFSTMVSEGRCCS-----CIFWGPPGVGKTTLATVMADAA 80

Query: 79  GVNFRSTSGPVIAKA--GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           G+ F   S     KA   D+     +     +LF+DEIHR +   +++L P +ED  L +
Sbjct: 81  GIPFVQLSAVSAGKAEVQDVVKRARSAGQTWLLFLDEIHRFNKAQQDVLLPCIEDGTL-V 139

Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA 196
           +VG      S  +N                 N L  R  + I L   +  D+  I++R  
Sbjct: 140 LVGATTENPSFSLN-----------------NALLSRCRV-IVLQALQASDVAVILKRAC 181

Query: 197 KLTG-----LAVTDEAACEIAMRSRGTPRIA 222
           +  G      ++ D+A   +A  S G  R A
Sbjct: 182 RYLGDQAKAFSLDDDALVWLAENSDGDARYA 212


>gi|58337368|ref|YP_193953.1| recombination factor protein RarA [Lactobacillus acidophilus NCFM]
 gi|58254685|gb|AAV42922.1| chromosome segregation helicase [Lactobacillus acidophilus NCFM]
          Length = 429

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 65/119 (54%), Gaps = 3/119 (2%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           L+RP+TL E  GQ    +  K   +  K     L  +L  GPPG GKTTLA V+++ L +
Sbjct: 10  LMRPKTLGEMVGQNHLLAKGKPLYQIIKEHI--LLSLLLWGPPGCGKTTLAYVMSQTLRL 67

Query: 81  NFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
            F   +  +  K+     +  + ++  VL +DEIHRL+  +++ L P +E+  + L+VG
Sbjct: 68  PFEKFNASIQNKSQLQKLIQKHPDESFVLLLDEIHRLTKPIQDYLLPYLENGHV-LLVG 125


>gi|212702534|ref|ZP_03310662.1| hypothetical protein DESPIG_00553 [Desulfovibrio piger ATCC 29098]
 gi|212673975|gb|EEB34458.1| hypothetical protein DESPIG_00553 [Desulfovibrio piger ATCC 29098]
          Length = 408

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 84/187 (44%), Gaps = 32/187 (17%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP   + F GQ    S LK  + A     E L  +L  GPPG GK+TLA ++AR     
Sbjct: 11  MRPDDPDLFLGQSHLASRLKSLMAA-----ERLPSLLLFGPPGCGKSTLALLLARSRKRP 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VG 139
           +   S P   +AG L  L  +L   ++L +DE+HR S   ++   P +E  +L L+    
Sbjct: 66  YLRLSAP---EAG-LQHLRRSLNGIEILVLDELHRFSKAQQDFFLPLVESGELTLLATTT 121

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199
           E PS    +  LSR  +                     +RL      +L  + +RGA+ T
Sbjct: 122 ENPSFSVTRQLLSRLHV---------------------LRLRPLGRSELMELARRGAEQT 160

Query: 200 GLAVTDE 206
           G+ + DE
Sbjct: 161 GVTLGDE 167


>gi|229820501|ref|YP_002882027.1| AAA ATPase central domain protein [Beutenbergia cavernae DSM 12333]
 gi|229566414|gb|ACQ80265.1| AAA ATPase central domain protein [Beutenbergia cavernae DSM 12333]
          Length = 484

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 73/145 (50%), Gaps = 14/145 (9%)

Query: 12  VSQEDADISL-LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
            ++ DA +++ +RP +  E  GQ   +E  + L+   E A   A     V+  GPPG GK
Sbjct: 16  AARPDAPLAVRMRPASASEVVGQEHLLEPGAPLRRLTEPADPGAPPPSSVILWGPPGTGK 75

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSII 120
           TTLA ++A   G  F   S  V A   D+ A++ +   R        VLF+DE+HR S  
Sbjct: 76  TTLAYLIAHASGRRFVELSA-VTAGVRDVRAVIDDARRRLAGGGVETVLFVDEVHRFSKT 134

Query: 121 VEEILYPAMEDFQLDLMVG--EGPS 143
            ++ L P++E+  + L+    E PS
Sbjct: 135 QQDALLPSVENRWVTLVAATTENPS 159


>gi|282856171|ref|ZP_06265454.1| AAA ATPase central domain protein [Pyramidobacter piscolens W5455]
 gi|282585930|gb|EFB91215.1| AAA ATPase central domain protein [Pyramidobacter piscolens W5455]
          Length = 439

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 83/169 (49%), Gaps = 18/169 (10%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPR+L+EF GQ       K+         + +  ++F GPPG+GKTTLA+++A +    
Sbjct: 19  LRPRSLDEFVGQTHLLGPDKILRRLIVN--DTISSMIFWGPPGVGKTTLARIIANQTKAE 76

Query: 82  FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F + S  V +   ++  ++   E       + ++F+DEIHR +   ++   P +E   + 
Sbjct: 77  FINFSA-VTSGIKEIRTVMQQAESNRAFGGKTIVFVDEIHRFNKAQQDAFLPFVEKGSI- 134

Query: 136 LMVGEGPSARSVKIN---LSR---FTLIAATTR--VGLLTNPLQDRFGI 176
           +++G      S ++N   LSR   F L A TT   V LL   L D  G 
Sbjct: 135 ILIGATTENPSFEVNGALLSRCKVFVLQALTTDELVSLLQRALADPRGF 183


>gi|314927363|gb|EFS91194.1| recombination factor protein RarA [Propionibacterium acnes
           HL044PA1]
 gi|328907448|gb|EGG27214.1| recombination factor protein RarA [Propionibacterium sp. P08]
          Length = 474

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 66/133 (49%), Gaps = 17/133 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPRT++E  GQ   + + S L+   E   A +     V   GPPG+GKTT+A VV+   
Sbjct: 48  LRPRTIDEIVGQQHLLTSGSPLRRLAEGTGAMS-----VFLWGPPGVGKTTIASVVSHAT 102

Query: 79  GVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
              F   S  V A   D+   L        L    VLF+DE+HR S   +++L PA+E+ 
Sbjct: 103 NRRFVEISA-VTAGVKDVRRELDTARRQLALGKPTVLFVDEVHRFSKAQQDVLLPAVENR 161

Query: 133 QLDLMVG--EGPS 143
            + L+    E PS
Sbjct: 162 TVTLIAATTENPS 174


>gi|312865956|ref|ZP_07726177.1| replication-associated recombination protein A [Streptococcus
           downei F0415]
 gi|311098360|gb|EFQ56583.1| replication-associated recombination protein A [Streptococcus
           downei F0415]
          Length = 449

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 73/137 (53%), Gaps = 10/137 (7%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           S +RP++L++F GQ       K   E  +   + +  ++F GPPG+GKTTLA+++A++  
Sbjct: 19  SRMRPQSLDDFVGQEHLVGQGKFLREMIEK--DQVSSMIFWGPPGVGKTTLAEIIAKKTN 76

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             F + S  V+    ++  ++   E      ++ ++FIDEIHR +   ++   P +E   
Sbjct: 77  AKFITFSA-VMNGIKEIRTIMNEAEENRSFGEKTIVFIDEIHRFNKAQQDAFLPYVEKGS 135

Query: 134 LDLMVGEGPSARSVKIN 150
           + +++G      S ++N
Sbjct: 136 I-ILIGATTENPSFEVN 151


>gi|288927100|ref|ZP_06420988.1| ATPase, AAA family [Prevotella buccae D17]
 gi|288336127|gb|EFC74520.1| ATPase, AAA family [Prevotella buccae D17]
          Length = 419

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/149 (35%), Positives = 76/149 (51%), Gaps = 22/149 (14%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL+++ GQ   V   + L+  IE  +     +   +  GPPG+GKTTLAQ++A  L
Sbjct: 8   MRPRTLDDYVGQQHLVGPGAVLRRMIEGGR-----ISSFILWGPPGVGKTTLAQIIANRL 62

Query: 79  GVNFRS----TSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
              F +    TSG      VI +AG       +L    +LFIDEIHR S   ++ L  A+
Sbjct: 63  KTPFYTLSAVTSGVKDVREVIERAGR-NRFFDSLS--PILFIDEIHRFSKSQQDSLLGAV 119

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTL 156
           E   + L+    E PS   ++  LSR  L
Sbjct: 120 EKGVVTLIGATTENPSFEVIRPLLSRCQL 148


>gi|313837756|gb|EFS75470.1| recombination factor protein RarA [Propionibacterium acnes
           HL037PA2]
 gi|314972693|gb|EFT16790.1| recombination factor protein RarA [Propionibacterium acnes
           HL037PA3]
          Length = 461

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 66/133 (49%), Gaps = 17/133 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPRT++E  GQ   + + S L+   E   A +     V   GPPG+GKTT+A VV+   
Sbjct: 35  LRPRTIDEIVGQQHLLTSGSPLRRLAEGTGAMS-----VFLWGPPGVGKTTIASVVSHAT 89

Query: 79  GVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
              F   S  V A   D+   L        L    VLF+DE+HR S   +++L PA+E+ 
Sbjct: 90  NRRFVEISA-VTAGVKDVRRELDTARRQLALGKPTVLFVDEVHRFSKAQQDVLLPAVENR 148

Query: 133 QLDLMVG--EGPS 143
            + L+    E PS
Sbjct: 149 TVTLIAATTENPS 161


>gi|269795071|ref|YP_003314526.1| Recombination protein MgsA [Sanguibacter keddieii DSM 10542]
 gi|269097256|gb|ACZ21692.1| Recombination protein MgsA [Sanguibacter keddieii DSM 10542]
          Length = 490

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/136 (35%), Positives = 68/136 (50%), Gaps = 15/136 (11%)

Query: 22  LRPRTLEEFTGQVE---ACSNLKVFIEAA--KARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           +RP +L E  GQ       S L+  +E A   +R  A   V+  GPPG GKTTLA ++A 
Sbjct: 27  MRPASLAEVAGQKHLLVQGSPLRRLVEPADDSSRRAAPGSVILWGPPGTGKTTLAYLIAT 86

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAM 129
             G  F   S  V A   D+ A++ +   R        VLFIDE+HR S   ++ L P++
Sbjct: 87  SSGRRFVELSA-VTAGVKDVRAVIEDARRRLATGGSETVLFIDEVHRFSKSQQDALLPSV 145

Query: 130 EDFQLDLMVG--EGPS 143
           E+  + L+    E PS
Sbjct: 146 ENRWVTLVAATTENPS 161


>gi|146297065|ref|YP_001180836.1| recombination factor protein RarA [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410641|gb|ABP67645.1| Recombination protein MgsA [Caldicellulosiruptor saccharolyticus
           DSM 8903]
          Length = 444

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 61/117 (52%), Gaps = 10/117 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ LEE  GQ       K      K   + L  ++  GPPG GKTT+A V+A+     
Sbjct: 22  LRPKRLEEIVGQEHILGEGKPLYNLIKN--DKLTSIILYGPPGTGKTTIAHVIAQVTNNI 79

Query: 82  FRSTSGPVIAKAGDLAALL--TNLE-----DRDVLFIDEIHRLSIIVEEILYPAMED 131
           F+S +   IA   D+  ++    LE      R +LFIDEIHR + + ++ L P++E+
Sbjct: 80  FKSINA-TIAGINDIKKIIEEAKLEFSQGGRRTILFIDEIHRFNKLQQDALLPSVEE 135


>gi|320159500|ref|YP_004172724.1| putative ATPase [Anaerolinea thermophila UNI-1]
 gi|319993353|dbj|BAJ62124.1| putative ATPase [Anaerolinea thermophila UNI-1]
          Length = 463

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 68/141 (48%), Gaps = 11/141 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPRT +E  GQ       K+   A +        ++  GPPG GKTTLAQ++A+    +
Sbjct: 22  LRPRTFDEMVGQEHIIGPGKLLRRAIETD-RLFSSIILWGPPGTGKTTLAQLIAQYTQAH 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F   S  V+A   DL  ++   E+       R +LF+DE+HR +   ++ L P +E   +
Sbjct: 81  FEVISA-VLAGVPDLRRVIQEAEERRKLYRRRTILFVDEVHRWNKAQQDALLPHVESGMI 139

Query: 135 DLM--VGEGPSARSVKINLSR 153
            L+    E P    +   +SR
Sbjct: 140 TLVGATTENPYFEVISALVSR 160


>gi|226330732|ref|ZP_03806250.1| hypothetical protein PROPEN_04652 [Proteus penneri ATCC 35198]
 gi|225201527|gb|EEG83881.1| hypothetical protein PROPEN_04652 [Proteus penneri ATCC 35198]
          Length = 354

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 71/143 (49%), Gaps = 11/143 (7%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
            SRN  Q  A  + +RP TLE++ GQ    +  K    A KA    L  ++  GPPG GK
Sbjct: 16  FSRNEFQPLA--ARMRPETLEQYIGQTHLLAEGKPLPRAIKA--GQLHSMILWGPPGTGK 71

Query: 68  TTLAQVVARELGVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           TTLA+++ R    +       TSG   I ++ ++A    N   R +LF+DE+HR +   +
Sbjct: 72  TTLAEIIGRYAQADIERLSAVTSGIKEIRESIEIARQNRNAGRRTILFVDEVHRFNKSQQ 131

Query: 123 EILYPAMEDFQLDLM--VGEGPS 143
           +   P +ED  +  +    E PS
Sbjct: 132 DAFLPHIEDGTITFIGATTENPS 154


>gi|118474633|ref|YP_892891.1| recombination factor protein RarA [Campylobacter fetus subsp. fetus
           82-40]
 gi|118413859|gb|ABK82279.1| ATPase, AAA family [Campylobacter fetus subsp. fetus 82-40]
          Length = 397

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 58/112 (51%), Gaps = 9/112 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
            RP  + +  GQ +       FI++ K     + H LF G  G GKTT+A+++A+++   
Sbjct: 7   FRPNNINDMVGQKDIVELFSKFIKSKK-----IPHSLFFGATGCGKTTMAKIIAKQMNYE 61

Query: 82  FRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAME 130
           F    G  + K+ D+  +++  E    + ++FIDE HRLS   +E L   ME
Sbjct: 62  FFELDGANL-KSEDIRKIISKFETTLYKPLIFIDEFHRLSKTQQETLLIPME 112


>gi|256545396|ref|ZP_05472759.1| AAA family ATPase [Anaerococcus vaginalis ATCC 51170]
 gi|256398957|gb|EEU12571.1| AAA family ATPase [Anaerococcus vaginalis ATCC 51170]
          Length = 443

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 75/152 (49%), Gaps = 17/152 (11%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  +E+F GQ       K+     K+  + +   +F GPPG+GKTTLA++++    + 
Sbjct: 22  MRPEKIEDFLGQDHLLGEGKILRRMIKS--DRIYSSIFYGPPGVGKTTLAKIISNSTNMA 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F   S  V +   DL   +   +D       + +LFIDEIHR +   ++ L P +ED  +
Sbjct: 80  FEKVSA-VASGINDLKKKIQIAKDNLKFENKKTILFIDEIHRFNKSQQDYLLPFVEDSTI 138

Query: 135 DLMVG---EGPSARSVKINLSR---FTLIAAT 160
            +++G   E P     K  +SR   F L A T
Sbjct: 139 -ILIGATTENPYFEVNKALISRMYVFELKAHT 169


>gi|295098785|emb|CBK87874.1| Recombination protein MgsA [Eubacterium cylindroides T2-87]
          Length = 445

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 70/135 (51%), Gaps = 10/135 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP TLEE+ GQ +     K+  +  +   + +  ++F GPPG+GKTTLA+++A +    
Sbjct: 20  MRPETLEEYVGQHQLVEKGKLLWQMIEN--DQVTSMIFWGPPGVGKTTLARIIAHQTESY 77

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDV------LFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F   S  V +   ++  ++   + R V      LF+DEIHR +   ++   P +E   + 
Sbjct: 78  FVDFSA-VTSGIKEIKEVMKQADQRKVLGQKTILFVDEIHRFNKAQQDAFLPYVEKGSI- 135

Query: 136 LMVGEGPSARSVKIN 150
           +++G      S +IN
Sbjct: 136 ILIGATTENPSFEIN 150


>gi|227503535|ref|ZP_03933584.1| crossover junction endodeoxyribonuclease ATPase [Corynebacterium
           accolens ATCC 49725]
 gi|227075571|gb|EEI13534.1| crossover junction endodeoxyribonuclease ATPase [Corynebacterium
           accolens ATCC 49725]
          Length = 461

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 67/130 (51%), Gaps = 11/130 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+TLEE  GQ    +  K      +   EA   V+  GPPG GKTT+A ++A ++G N
Sbjct: 44  MRPQTLEEVVGQDHLLAPGKPLRRLVEGSGEA--SVILYGPPGTGKTTIASLIASQMGQN 101

Query: 82  FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F   S  + +    +  ++T+         R VLFIDE+HR S   ++ L  A+E+  + 
Sbjct: 102 FVGLSA-LDSGVKQVREVITHARQELIHGRRTVLFIDEVHRFSKTQQDALLAAVENRTVL 160

Query: 136 LMVG--EGPS 143
           L+    E PS
Sbjct: 161 LVAATTENPS 170


>gi|319899072|ref|YP_004159165.1| ATPase, AAA family [Bartonella clarridgeiae 73]
 gi|319403036|emb|CBI76591.1| ATPase, AAA family [Bartonella clarridgeiae 73]
          Length = 438

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 105/231 (45%), Gaps = 33/231 (14%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR+L E  GQ       + F+    A   +   ++F GPPG GKTT+A+++A E    
Sbjct: 24  MRPRSLNEVVGQNHLIGT-EGFLSLMVASG-SFSSMIFWGPPGTGKTTIARLLALETNFV 81

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F   S  +     +L  +    + R       +LFIDEIHR +   ++   P MED  + 
Sbjct: 82  FEQVSA-IFTGISELKKIFEAAQARLMSGYQTLLFIDEIHRFNRAQQDSFLPFMEDGTI- 139

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           ++VG      S ++N       A  +R  +LT    D             E L T+++R 
Sbjct: 140 ILVGATTENPSFELN------AALLSRARVLTFRSHDN------------ESLDTLLKRA 181

Query: 196 AKLTGLAVT-DEAACEIAMR-SRGTPRIAGRL---LRRVRDFAEVAHAKTI 241
            K  G ++  D+ A EI +R S G  R+A  L   + RV    EV + +T+
Sbjct: 182 EKAEGRSLPLDDHAREILIRVSDGDARVALTLAEEIWRVARSEEVFNTETL 232


>gi|332879429|ref|ZP_08447125.1| ATPase, AAA family [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332682619|gb|EGJ55520.1| ATPase, AAA family [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 423

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 76/147 (51%), Gaps = 18/147 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL+++ GQ   V + + L+  I++ +     +   +  GPPG+GKTTLAQ++A  L
Sbjct: 9   LRPQTLDDYIGQKHLVGSDAVLRKMIDSGR-----ISSFILWGPPGVGKTTLAQIIAHRL 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V +   D+  ++    +         +LFIDEIHR S   ++ L  A+E 
Sbjct: 64  ETPFYTLSA-VTSGVKDVREVIEKARNNRFFTQASPILFIDEIHRFSKSQQDSLLGAVEQ 122

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156
             + L+    E PS   ++  LSR  L
Sbjct: 123 GTVTLIGATTENPSFEVIRPLLSRCQL 149


>gi|332535766|ref|ZP_08411508.1| putative polynucleotide enzyme with nucleotide triphosphate
           hydrolase domain [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332034834|gb|EGI71368.1| putative polynucleotide enzyme with nucleotide triphosphate
           hydrolase domain [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 447

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 97/225 (43%), Gaps = 37/225 (16%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKA-RAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           +RP TL+E+ GQ    S  K   +A  A R  +L   +  GPPG+GKTTLAQ++A     
Sbjct: 19  MRPTTLDEYIGQQHLLSGDKPLHQAIVAGRCHSL---ILWGPPGVGKTTLAQIIANHADA 75

Query: 81  NFRSTSGPVIAKAGDLAALLT----NLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +    S  V A   D+   +T    NLE    R ++F+DE+HR +   ++   P +ED  
Sbjct: 76  SLIQMSA-VTAGVKDIRDSVTQARDNLESRGQRTLMFVDEVHRFNKSQQDAFLPHIEDGT 134

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
             + VG      S  +N      I +  RV +L + L D              DL T+++
Sbjct: 135 F-IFVGATTENPSFALN----NAILSRARVYVLKS-LAD-------------TDLYTVIE 175

Query: 194 RGAK------LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R  K         + + D A   +   S G  R    LL +  D 
Sbjct: 176 RALKQDEQLSQKHITIADNAKKALCQASGGDARKVLNLLEQAVDL 220


>gi|119713533|gb|ABL97586.1| ATPase AAA family protein [uncultured marine bacterium EB0_35D03]
          Length = 417

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 89/193 (46%), Gaps = 26/193 (13%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           +LRP  L +F GQ     + K  I  A A  + L  ++F GP G+GKTTLA+++  ++G 
Sbjct: 10  VLRPTKLNDFIGQDHLLKSDKP-IGKALADKQFLS-MVFWGPSGVGKTTLARIICSQMGA 67

Query: 81  NFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           +F   S  +     +    + A L    +   +LF+DEIHR +   ++   P +E   L 
Sbjct: 68  HFEQMSAVLDGIKELRNVIEHAELYKQHDKNTILFVDEIHRFNKAQQDAFLPHIES-GLI 126

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
            ++G      S +IN S    + +  RV +L N L+D             EDLK I  + 
Sbjct: 127 TLIGATTENPSFEINSS----LLSRMRVYIL-NKLRD-------------EDLKIIASKA 168

Query: 196 AKLTGLAVTDEAA 208
            K   + + D  A
Sbjct: 169 IKSQKITLKDNDA 181


>gi|311031534|ref|ZP_07709624.1| recombination factor protein RarA [Bacillus sp. m3-13]
          Length = 423

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 68/130 (52%), Gaps = 4/130 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRT++E  GQ     + K+     KA+   L  ++  GPPG+GKT++A  +A      
Sbjct: 10  MRPRTIDEMVGQEHLVGDGKIIQRMVKAKH--LSSMILYGPPGIGKTSIATAIAGSTQYA 67

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR+ +  V  K   ++ A    +  + +L +DE+HRL    ++ L P +E+ ++ +++G 
Sbjct: 68  FRTLNAVVHNKKDMEIVAEEAKMSGKVILILDEVHRLDKAKQDFLLPHLENGRI-VLIGA 126

Query: 141 GPSARSVKIN 150
             S     IN
Sbjct: 127 TTSNPYHAIN 136


>gi|134117618|ref|XP_772580.1| hypothetical protein CNBL0580 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50255195|gb|EAL17933.1| hypothetical protein CNBL0580 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 626

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 78/154 (50%), Gaps = 22/154 (14%)

Query: 23  RPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           RP  + ++ GQ +     S L+V IEA+K     +   +  GPPG GKTTLA+++A+  G
Sbjct: 146 RPSEISQYIGQSDIVGLGSLLRVQIEASKL----VGSCILWGPPGCGKTTLARLIAKSSG 201

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDF 132
            +F+  S    +   D+  +    ++       R VL IDEIHR +   +++L P +E  
Sbjct: 202 ADFKELSA-TSSGTQDVRQVFEKAKNGLQMTGRRTVLMIDEIHRFNRAQQDLLLPYVEKG 260

Query: 133 QLDLMVGEGPSARSVKIN---LSR---FTLIAAT 160
            + L +G      S K+N   LSR   FTL A +
Sbjct: 261 WIQL-IGATTENPSFKVNGALLSRCQVFTLHAHS 293


>gi|110598474|ref|ZP_01386745.1| AAA ATPase, central region [Chlorobium ferrooxidans DSM 13031]
 gi|110339924|gb|EAT58428.1| AAA ATPase, central region [Chlorobium ferrooxidans DSM 13031]
          Length = 447

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/138 (32%), Positives = 70/138 (50%), Gaps = 16/138 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPR+L++  GQ   V     L+ FI + +     L  ++F GPPG GKTTLA++ A  L
Sbjct: 31  VRPRSLDDMAGQEHLVGPSGPLRRFISSGQ-----LPSMIFWGPPGSGKTTLAEICAASL 85

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDF 132
              F   S  + +   D+   L N +       R +LFIDEIHR +   ++ L  A+E  
Sbjct: 86  NYRFEQLSA-IDSGVKDVRKALDNAQKSRASGLRTILFIDEIHRFNKGQQDTLLHAIEQ- 143

Query: 133 QLDLMVGEGPSARSVKIN 150
            L +++G      S ++N
Sbjct: 144 GLIVLIGATTENPSFEVN 161


>gi|304436891|ref|ZP_07396855.1| replication-associated recombination protein A [Selenomonas sp.
           oral taxon 149 str. 67H29BP]
 gi|304370090|gb|EFM23751.1| replication-associated recombination protein A [Selenomonas sp.
           oral taxon 149 str. 67H29BP]
          Length = 447

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 82/159 (51%), Gaps = 18/159 (11%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVF---IEAAKARAEALDHV 57
           M ++ GL +R   Q  A+   +RPRTL++F GQ       K+    IE+ +     +  +
Sbjct: 3   MDEQGGLFARAAYQPLAE--RVRPRTLDDFVGQEHLLGQGKILRRLIESDR-----ITSM 55

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFI 111
           +F GPPG+GKTTLAQ++A      F + S  V +   ++  ++   +      +R V+F+
Sbjct: 56  IFWGPPGVGKTTLAQIIAARTKAEFITFSA-VTSGIKEIRTVMQEADRRRMYGERIVVFV 114

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN 150
           DEIHR +   ++   P +E   + +++G      S +IN
Sbjct: 115 DEIHRFNKAQQDAFLPFVEKGSI-VLIGATTENPSFEIN 152


>gi|168071185|ref|XP_001787086.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162659751|gb|EDQ48100.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 216

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 65/117 (55%), Gaps = 10/117 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP++++E  GQ    +  K+   A +A  + +  ++F GPPG GKTTLA+V+AR    +
Sbjct: 24  MRPQSIQEVIGQSHILAPGKLLRRAIEA--DQVSSLIFYGPPGTGKTTLAKVIARSTRSH 81

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDV-------LFIDEIHRLSIIVEEILYPAMED 131
           F S    V A   D+  ++   ++R V       LF+DEIHR +   ++ L P +E+
Sbjct: 82  F-SELNAVTAGVADIRKVVEAAKERLVMDNQRTTLFVDEIHRFNKSQQDALLPYVEE 137


>gi|328881155|emb|CCA54394.1| ATPase, AAA family [Streptomyces venezuelae ATCC 10712]
          Length = 452

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 63/126 (50%), Gaps = 11/126 (8%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL+E  GQ   ++  S L+  +            V+  GPPG+GKTTLA VV++  
Sbjct: 29  MRPRTLDEVVGQQHLLKPGSPLRRLVGDGDGGPAGASSVILWGPPGIGKTTLAYVVSKAT 88

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAMED 131
              F   S  + A   ++ A++              VLF+DEIHR S   ++ L PA+E+
Sbjct: 89  NKRFVELSA-ITAGVKEVRAVIDGARRAVGGYGKETVLFLDEIHRFSKAQQDSLLPAVEN 147

Query: 132 FQLDLM 137
             + L+
Sbjct: 148 RWVTLI 153


>gi|189346365|ref|YP_001942894.1| recombination factor protein RarA [Chlorobium limicola DSM 245]
 gi|189340512|gb|ACD89915.1| AAA ATPase central domain protein [Chlorobium limicola DSM 245]
          Length = 449

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/145 (33%), Positives = 69/145 (47%), Gaps = 15/145 (10%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL++ +GQ         L+ F+E+ +     L  ++  GPPG GKTTLA++ A  L
Sbjct: 33  VRPRTLDDLSGQAHLVGKDGPLRSFLESGR-----LPSMILWGPPGSGKTTLAEICATSL 87

Query: 79  GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
              F   S        + KA D A        R +LFIDEIHR +   ++ L  A+E   
Sbjct: 88  HYRFEQLSAIDAGVKEVRKALDGARQARRSGQRTILFIDEIHRFNKAQQDTLLHAIEQGL 147

Query: 134 LDLM--VGEGPSARSVKINLSRFTL 156
           + L+    E PS       LSR  +
Sbjct: 148 ITLIGATTENPSFEVNGALLSRMQV 172


>gi|148377334|ref|YP_001256210.1| recombination factor protein RarA [Mycoplasma agalactiae PG2]
 gi|148291380|emb|CAL58764.1| ATPase, AAA family [Mycoplasma agalactiae PG2]
          Length = 404

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 57/109 (52%), Gaps = 9/109 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+TL++  GQ      LK       AR +     +F G  G GKT+ A  +A +LG+ 
Sbjct: 8   LRPKTLDDIIGQKSVVELLK-----KVARDKIYSSFIFFGESGTGKTSAAVALANDLGLK 62

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           +   +  V +KA     L+  L D DVL IDEIHRL+   ++IL   +E
Sbjct: 63  YDYFNASVNSKA----ELIKMLADNDVLIIDEIHRLNKDKQDILLSYLE 107


>gi|300023015|ref|YP_003755626.1| ATPase AAA [Hyphomicrobium denitrificans ATCC 51888]
 gi|299524836|gb|ADJ23305.1| AAA ATPase central domain protein [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 439

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/146 (32%), Positives = 73/146 (50%), Gaps = 15/146 (10%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL E  GQ   V     L   +++ +     +  ++F GPPG GKTT+A+++A E 
Sbjct: 22  LRPKTLPEVAGQDHIVGPDGTLTRMLKSGR-----VPSLIFWGPPGSGKTTIARLLANET 76

Query: 79  GVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
            +NF   S        + KA + A ++       +LFIDEIHR +   ++   P MED  
Sbjct: 77  NLNFEQLSAIFSGVADLRKAFERAKIMREQGKGTLLFIDEIHRFNRSQQDSFLPYMEDGT 136

Query: 134 LDLM--VGEGPSARSVKINLSRFTLI 157
           + L+    E PS       LSR +++
Sbjct: 137 ITLVGATTENPSFELNAAVLSRASVL 162


>gi|170722571|ref|YP_001750259.1| recombination factor protein RarA [Pseudomonas putida W619]
 gi|169760574|gb|ACA73890.1| AAA ATPase central domain protein [Pseudomonas putida W619]
          Length = 441

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 72/135 (53%), Gaps = 9/135 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP +L+E+ GQ    +  K   EA +    AL  ++F GPPG+GKTTLA+++A+    +
Sbjct: 17  LRPSSLDEYVGQEHLLARGKPLREALEQ--GALHSMIFWGPPGVGKTTLARLLAQFCDAH 74

Query: 82  FRSTSGPV-----IAKAGDLAALLT-NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F + S  +     I +A ++A         R +LF+DE+HR +   ++   P +ED  L 
Sbjct: 75  FETVSAVLAGVKEIRQAVEVAKQQAGQYGRRTILFVDEVHRFNKSQQDAFLPFVEDGTL- 133

Query: 136 LMVGEGPSARSVKIN 150
           + +G      S ++N
Sbjct: 134 IFIGATTENPSFELN 148


>gi|332662821|ref|YP_004445609.1| AAA ATPase central domain-containing protein [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332331635|gb|AEE48736.1| AAA ATPase central domain protein [Haliscomenobacter hydrossis DSM
           1100]
          Length = 425

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/141 (34%), Positives = 68/141 (48%), Gaps = 12/141 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  L ++ GQ        V  +A  A    L  ++  GPPG+GKTTLA ++A ELG  
Sbjct: 8   MRPTRLADYLGQEHLVGEGSVLRQALAAGF--LPSIILWGPPGVGKTTLANILASELGRP 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F S S  + A   D+   +   E +        +LFIDEIHR S   ++ L  A+E   +
Sbjct: 66  FYSLSA-IAAGVKDVRDTIQKAEQQRFFNRPNPILFIDEIHRFSKSQQDALLGAVEKGVI 124

Query: 135 DLM--VGEGPSARSVKINLSR 153
            LM    E PS   +   LSR
Sbjct: 125 TLMGATTENPSFEVIPALLSR 145


>gi|157962052|ref|YP_001502086.1| recombination factor protein RarA [Shewanella pealeana ATCC 700345]
 gi|157847052|gb|ABV87551.1| AAA ATPase central domain protein [Shewanella pealeana ATCC 700345]
          Length = 443

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 72/137 (52%), Gaps = 13/137 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKA-RAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           +RP TLE++ GQ       K   +A +A RA ++   +F GPPG GKTTLA++VAR    
Sbjct: 19  MRPETLEQYIGQTHLLGEGKPLRQALEAGRAHSM---MFWGPPGTGKTTLAELVARYANA 75

Query: 81  NFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +    S  V +   ++ + + + ++       R +LF+DE+HR +   ++   P +ED  
Sbjct: 76  HVERISA-VTSGVKEIRSAIEHAKNVAQSRGQRTLLFVDEVHRFNKSQQDAFLPFIEDGT 134

Query: 134 LDLMVGEGPSARSVKIN 150
           + + +G      S +IN
Sbjct: 135 V-IFIGATTENPSFEIN 150


>gi|322514789|ref|ZP_08067812.1| replication-associated recombination protein A [Actinobacillus
           ureae ATCC 25976]
 gi|322119251|gb|EFX91381.1| replication-associated recombination protein A [Actinobacillus
           ureae ATCC 25976]
          Length = 446

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 60/118 (50%), Gaps = 13/118 (11%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL E+ GQ         L+  IEA  + +     ++F GPPG GKTTLA+++A   
Sbjct: 19  MRPRTLAEYIGQSHLIGEGKPLRRAIEAGHSHS-----MIFWGPPGTGKTTLAEIIAHHF 73

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
                     TSG   I +A + A L      R +LF+DE+HR +   ++   P +ED
Sbjct: 74  DAEVERLSAVTSGVKEIREAIERAKLNRQTGRRTLLFVDEVHRFNKSQQDAFLPHIED 131


>gi|293610473|ref|ZP_06692773.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826817|gb|EFF85182.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 421

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/195 (32%), Positives = 96/195 (49%), Gaps = 36/195 (18%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPR L E  GQ   +   + L+  I+        L  ++F GPPG+GKTT+A ++A+ +
Sbjct: 12  LRPRDLSEIIGQDHLLGEHAPLRQMIDQGH-----LPSIIFWGPPGVGKTTIALLLAQAI 66

Query: 79  GVNFRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
              F S S           VIA++GD   LLT      V+FIDEIHR +   ++ L  A+
Sbjct: 67  DRPFVSLSALNTGVKELREVIAESGD---LLT-----PVVFIDEIHRFNKSQQDALLGAV 118

Query: 130 EDFQLDLM--VGEGPSARSVKINLSR---FTLIAATTRV--GLLTNPLQ-DRFGIPIRLN 181
           E  ++ L+    E PS       LSR   +TL +  +     LL N LQ D+F   ++  
Sbjct: 119 EKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDSEAIQTLLNNALQSDKF---LKER 175

Query: 182 FYEIEDLKTIVQRGA 196
           +  IE+   ++Q  A
Sbjct: 176 YIHIEEYDALIQFAA 190


>gi|265751828|ref|ZP_06087621.1| recombination factor protein RarA [Bacteroides sp. 3_1_33FAA]
 gi|263236620|gb|EEZ22090.1| recombination factor protein RarA [Bacteroides sp. 3_1_33FAA]
          Length = 425

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 75/147 (51%), Gaps = 18/147 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL+++ GQ   V   + L+  I+A +     +   +  GPPG+GKTTLAQ++A +L
Sbjct: 9   LRPKTLDDYIGQKHLVGPGAVLRKMIDAGR-----ISSFILWGPPGVGKTTLAQIIANKL 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V +   D+  ++              +LFIDEIHR S   ++ L  A+E 
Sbjct: 64  ETPFYTLSA-VTSGVKDVRDVIEKARSNHFFSQASPILFIDEIHRFSKSQQDSLLGAVET 122

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156
             + L+    E PS   ++  LSR  L
Sbjct: 123 GVVTLIGATTENPSFEVIRPLLSRCQL 149


>gi|310778223|ref|YP_003966556.1| Recombination protein MgsA [Ilyobacter polytropus DSM 2926]
 gi|309747546|gb|ADO82208.1| Recombination protein MgsA [Ilyobacter polytropus DSM 2926]
          Length = 412

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 105/231 (45%), Gaps = 48/231 (20%)

Query: 22  LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP+TL ++ GQ E     S L+  I   K     + + +F GPPG GKT+LA+++A EL
Sbjct: 19  MRPKTLLDYVGQEEIIGEKSVLRKLITKGK-----MINSIFFGPPGTGKTSLAEIIAEEL 73

Query: 79  GVNFRSTSGPVIAKAGDL------AALLTNLED-RDVLFIDEIHRLSIIVEEILYPAMED 131
             +F   +    A   D       A     LE+ R +LF+DEIHR + + ++ L P  E+
Sbjct: 74  SYSFEKMNA-TTANLSDFREVVERAKKRVELENRRTLLFLDEIHRFNKLQQDSLLPYTEE 132

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTR--VGLLTNPLQDRFGIPIRLNFYEIED-- 187
               L+V                 L+ ATT      L N L  R  +     F ++E+  
Sbjct: 133 ---GLIV-----------------LVGATTENPYYTLNNALLSRCMV---FEFKKLEERH 169

Query: 188 LKTIVQRGAKLTGL--AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
           ++ +V++G K   +   ++ E    I   SRG  R+A   L  V  FA  A
Sbjct: 170 IRELVKKGCKRLDILEKLSSEMEDIILELSRGDARVA---LNYVELFANTA 217


>gi|300934544|ref|ZP_07149800.1| recombination factor protein RarA [Corynebacterium resistens DSM
           45100]
          Length = 545

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 90/178 (50%), Gaps = 24/178 (13%)

Query: 22  LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPR+L+E  GQ EA    S L+  IE    R ++   V+  GPPG GKTT+A +++   
Sbjct: 61  MRPRSLDEVVGQKEALGAGSPLRRLIEG---RGDS--SVILYGPPGTGKTTIASLISAAS 115

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDF 132
             +F + S  + +   ++ A++ N   R       VLFIDE+HR S   ++ L  A+E+ 
Sbjct: 116 DRHFEALSA-LNSGVKEVRAVIDNARQRLIHGRATVLFIDEVHRFSKTQQDALLSAVENR 174

Query: 133 QLDLMVG--EGPSARSVKINLSRFTLIAATTRVG-----LLTNPLQD--RFGIPIRLN 181
            + L+    E PS   V   LSR  L+   +        +LT  ++D   FG  +RL+
Sbjct: 175 TVLLVAATTENPSFSVVAPLLSRSLLVQLHSLTDEDIATVLTRAVEDPRGFGSKVRLS 232


>gi|298246048|ref|ZP_06969854.1| AAA ATPase central domain protein [Ktedonobacter racemifer DSM
           44963]
 gi|297553529|gb|EFH87394.1| AAA ATPase central domain protein [Ktedonobacter racemifer DSM
           44963]
          Length = 481

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/145 (35%), Positives = 73/145 (50%), Gaps = 16/145 (11%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVF---IEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           S +RPRTL+E  GQ       K+    IE+ +  +     +LF GPPG GKTTL++ +AR
Sbjct: 45  SRMRPRTLDELLGQEHLLGPGKLLRRTIESGRVTS-----MLFWGPPGSGKTTLSEAIAR 99

Query: 77  ELGVNF---RSTSGPV--IAKAGDLAALLTNL-EDRDVLFIDEIHRLSIIVEEILYPAME 130
                F    +TS  V  + +  D AA L    + R +LFIDEIHR +   ++ + P +E
Sbjct: 100 HADARFVTLSATSAGVADLRRVVDEAAKLRQFSQRRTILFIDEIHRFNKAQQDAVLPHVE 159

Query: 131 DFQLDLM--VGEGPSARSVKINLSR 153
              + L+    E PS       LSR
Sbjct: 160 RGTVTLIGATTENPSFEVNSALLSR 184


>gi|123967627|ref|YP_001008485.1| recombination factor protein RarA [Prochlorococcus marinus str.
           AS9601]
 gi|123197737|gb|ABM69378.1| putative ATPase, AAA family [Prochlorococcus marinus str. AS9601]
          Length = 429

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 76/143 (53%), Gaps = 20/143 (13%)

Query: 2   MDREGLLSRNVSQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M  E L + N SQ + +  L   LRP+ LE+F GQ +   N    + +A    + + + +
Sbjct: 1   MHSENLFT-NYSQIENNAPLADKLRPKNLEDFFGQ-QPILNENSLLRSAILN-DKVSNFI 57

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTS---GPVIAKAGDLAALLTNLEDR-------DV 108
           F GPPG+GKTTL ++++     N RS       V++   +L   + N +DR        +
Sbjct: 58  FSGPPGVGKTTLIEIIS----FNTRSKLIRLNAVLSSVKELRNEIANAKDRLINSKRKTI 113

Query: 109 LFIDEIHRLSIIVEEILYPAMED 131
           LFIDE+HR + + ++ L P++E+
Sbjct: 114 LFIDEVHRFTSLQQDALLPSIEN 136


>gi|75812394|ref|YP_320013.1| fused recombination factor protein RarA/unknown domain-containing
           protein [Anabaena variabilis ATCC 29413]
 gi|75705150|gb|ABA24824.1| Recombination protein MgsA [Anabaena variabilis ATCC 29413]
          Length = 739

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 61/116 (52%), Gaps = 8/116 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRTL+EF GQ       ++   A     + L  ++F GPPG GKTTLA+V+A     +
Sbjct: 22  MRPRTLDEFVGQDHIIGPGRLLRRAISL--DQLSSLIFYGPPGTGKTTLARVIANTTRAH 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAMED 131
           F + +  +       AA+ T  E R       +LF+DE+HR +   ++ L P +E+
Sbjct: 80  FLAINAVLSGVKEIRAAIDTAQEQRKFHNQRTILFVDEVHRFNKSQQDALLPWVEN 135


>gi|89092932|ref|ZP_01165884.1| ATPase, AAA family protein [Oceanospirillum sp. MED92]
 gi|89082957|gb|EAR62177.1| ATPase, AAA family protein [Oceanospirillum sp. MED92]
          Length = 452

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 102/230 (44%), Gaps = 44/230 (19%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP++L E+ GQ         L+  +E   A +     ++F GPPG+GKTTLA+++A  +
Sbjct: 17  MRPQSLAEYCGQAHLLGRDKPLRTALEQGSAHS-----MIFWGPPGVGKTTLAKLIAHHV 71

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131
             +F + S  V++   D+   +   +        + +LF+DE+HR +   ++   P +ED
Sbjct: 72  DAHFLTLSA-VLSGVKDIRVAVEQAKQHSAQTGRKTILFVDEVHRFNKSQQDAFLPYIED 130

Query: 132 FQLDLMVGEGPSARSVKIN---LSRFTL-----IAATTRVGLLTNPLQDRFGIPIRLNFY 183
             + + VG      S ++N   LSR  +     + AT  + +L   L D+          
Sbjct: 131 GTI-IFVGATTENPSFELNNALLSRARVYLLRSLEATDILNVLNRALDDQ---------- 179

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                    +RG     L ++DE    +A  + G  R +  LL    D A
Sbjct: 180 ---------ERGYGQRKLNISDEMLNRLAQAADGDARRSLNLLEIAADLA 220


>gi|330998553|ref|ZP_08322373.1| ATPase, AAA family protein [Paraprevotella xylaniphila YIT 11841]
 gi|329568151|gb|EGG49970.1| ATPase, AAA family protein [Paraprevotella xylaniphila YIT 11841]
          Length = 423

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 76/147 (51%), Gaps = 18/147 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL+++ GQ   V   + L+  I++ +     +   +  GPPG+GKTTLAQ++A +L
Sbjct: 9   LRPQTLDDYIGQKHLVGPDAVLRKMIDSGR-----ISSFILWGPPGVGKTTLAQIIAHKL 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V +   D+  ++    +         +LFIDEIHR S   ++ L  A+E 
Sbjct: 64  ETPFYTLSA-VTSGVKDVREVIEKARNNRFFTQASPILFIDEIHRFSKSQQDSLLGAVEQ 122

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156
             + L+    E PS   ++  LSR  L
Sbjct: 123 GTVTLIGATTENPSFEVIRPLLSRCQL 149


>gi|307326777|ref|ZP_07605969.1| AAA ATPase central domain protein [Streptomyces violaceusniger Tu
           4113]
 gi|306887540|gb|EFN18534.1| AAA ATPase central domain protein [Streptomyces violaceusniger Tu
           4113]
          Length = 462

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 65/127 (51%), Gaps = 11/127 (8%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL+E  GQ   +   S L+  +            V+  GPPG+GKTTLA VV++  
Sbjct: 27  MRPRTLDEVVGQQHLLRPGSPLRRLVGEGGGGPAGPSSVILWGPPGIGKTTLAYVVSQAT 86

Query: 79  GVNFRSTSGPVIAKAGDLAALL------TNLEDRD-VLFIDEIHRLSIIVEEILYPAMED 131
              F   S  + A   ++ A++      +    RD VLF+DEIHR S   ++ L PA+E+
Sbjct: 87  QKRFVELSA-ITAGVKEVRAVIDGARRSSGAYGRDTVLFLDEIHRFSKAQQDSLLPAVEN 145

Query: 132 FQLDLMV 138
             + L+ 
Sbjct: 146 RWVTLIA 152


>gi|254467160|ref|ZP_05080571.1| AAA ATPase, central region [Rhodobacterales bacterium Y4I]
 gi|206688068|gb|EDZ48550.1| AAA ATPase, central region [Rhodobacterales bacterium Y4I]
          Length = 440

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 72/137 (52%), Gaps = 14/137 (10%)

Query: 22  LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP++L E  GQ +     + L V + +      +L  ++F GPPG+GKTT+A+++A+E 
Sbjct: 28  LRPQSLGEVIGQAQVLGPEAPLGVMLASG-----SLSSLIFWGPPGVGKTTIARLLAKET 82

Query: 79  GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
            ++F   S      P + K  + A +        +LF+DEIHR +   ++   P MED  
Sbjct: 83  DLHFVQISAIFTGVPELRKVFEAARIRRQNGQGTLLFVDEIHRFNKAQQDGFLPHMEDGT 142

Query: 134 LDLMVGEGPSARSVKIN 150
           + L+VG      S ++N
Sbjct: 143 I-LLVGATTENPSFELN 158


>gi|117928540|ref|YP_873091.1| recombination factor protein RarA [Acidothermus cellulolyticus 11B]
 gi|117649003|gb|ABK53105.1| Recombination protein MgsA [Acidothermus cellulolyticus 11B]
          Length = 500

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 99/218 (45%), Gaps = 46/218 (21%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRT++EF GQ   +   + L+  ++  +A A +L   L  GPPG GKTTLA +V+   
Sbjct: 39  MRPRTIDEFVGQQHLLAPGTPLRRLLDDPQATAPSL---LLWGPPGSGKTTLAYLVSHAS 95

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131
           G  F   S  V A   D+  ++              VLF+DE+HR S   ++ L PA+E+
Sbjct: 96  GRRFVELSA-VAAGVKDVRDVIAAARRERAASGRGTVLFLDEVHRFSKAQQDSLLPAVEN 154

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             + L+    E PS   +   LSR  L        L   PL D             ++L+
Sbjct: 155 GIVTLIGATTENPSFSVIGPLLSRAVL--------LTLQPLSD-------------DELR 193

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
           T+++R       AV D     +A R   TP    RL+R
Sbjct: 194 TVIRR-------AVVDPRG--LAGRHTLTPAAEERLIR 222


>gi|229543727|ref|ZP_04432787.1| AAA ATPase central domain protein [Bacillus coagulans 36D1]
 gi|229328147|gb|EEN93822.1| AAA ATPase central domain protein [Bacillus coagulans 36D1]
          Length = 425

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 56/110 (50%), Gaps = 3/110 (2%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRT++E  GQ       K+     KAR   L  ++  GPPG+GKT++A  +A      
Sbjct: 10  MRPRTIDEVIGQEHLVGKNKIIYRMVKARQ--LSSMILYGPPGVGKTSIASAIAGSTKYA 67

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           FR+ +     K   ++ A    +  + +L +DE+HRL    ++ L P +E
Sbjct: 68  FRTLNAVTNNKKDMEIVAAEAKMSGKVILLLDEVHRLDKAKQDFLLPYLE 117


>gi|90417739|ref|ZP_01225651.1| ATPase, AAA family [Aurantimonas manganoxydans SI85-9A1]
 gi|90337411|gb|EAS51062.1| ATPase, AAA family [Aurantimonas manganoxydans SI85-9A1]
          Length = 452

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 65/135 (48%), Gaps = 10/135 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPR L E  GQ        V     +A   +L  ++F GPPG GKTT+A+++A E+   
Sbjct: 37  LRPRQLGEVVGQEHLTGEGGVLSRMLEA--TSLGSMIFWGPPGTGKTTVARLLAHEVDYA 94

Query: 82  FRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F   S  + +   DL  +            R +LF+DEIHR +   ++   P MED  + 
Sbjct: 95  FEQISA-IFSGVADLKKMFETARLRRSNGRRTLLFVDEIHRFNRAQQDSFLPVMEDGTV- 152

Query: 136 LMVGEGPSARSVKIN 150
           ++VG      S ++N
Sbjct: 153 VLVGATTENPSFELN 167


>gi|315101311|gb|EFT73287.1| recombination factor protein RarA [Propionibacterium acnes
           HL046PA1]
          Length = 462

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 65/133 (48%), Gaps = 17/133 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPRT++E  GQ   +   S L+   E   A +     V   GPPG+GKTT+A VV+   
Sbjct: 36  LRPRTIDEIVGQQHLLTPGSPLRRLAEGTGAMS-----VFLWGPPGVGKTTIASVVSHAT 90

Query: 79  GVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
              F   S  V A   D+   L        L    VLF+DE+HR S   +++L PA+E+ 
Sbjct: 91  NRRFVEISA-VTAGVKDIRRELDTARRQLALGQPTVLFVDEVHRFSKAQQDVLLPAVENR 149

Query: 133 QLDLMVG--EGPS 143
            + L+    E PS
Sbjct: 150 TVTLIAATTENPS 162


>gi|312868718|ref|ZP_07728910.1| ATPase, AAA family [Lactobacillus oris PB013-T2-3]
 gi|311095704|gb|EFQ53956.1| ATPase, AAA family [Lactobacillus oris PB013-T2-3]
          Length = 434

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 62/130 (47%), Gaps = 4/130 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRTLEE  GQ       K+     KAR   L  ++  GPPG GKT++A  +A      
Sbjct: 9   MRPRTLEEVVGQQHLVGPGKIIARMVKARM--LSSMILYGPPGTGKTSIASAIAGSTKYA 66

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR  +    +K    + A    +    +L +DEIHRL    ++ L P +E  ++ +++G 
Sbjct: 67  FRKLNAATDSKKDLQVVAEEAKMSGTVILLLDEIHRLDKAKQDFLLPHLESGRI-VLIGA 125

Query: 141 GPSARSVKIN 150
                 + IN
Sbjct: 126 TTENPYISIN 135


>gi|282853871|ref|ZP_06263208.1| recombination factor protein RarA [Propionibacterium acnes J139]
 gi|282583324|gb|EFB88704.1| recombination factor protein RarA [Propionibacterium acnes J139]
 gi|314923565|gb|EFS87396.1| recombination factor protein RarA [Propionibacterium acnes
           HL001PA1]
 gi|314966611|gb|EFT10710.1| recombination factor protein RarA [Propionibacterium acnes
           HL082PA2]
 gi|314981339|gb|EFT25433.1| recombination factor protein RarA [Propionibacterium acnes
           HL110PA3]
 gi|315092200|gb|EFT64176.1| recombination factor protein RarA [Propionibacterium acnes
           HL110PA4]
 gi|315092867|gb|EFT64843.1| recombination factor protein RarA [Propionibacterium acnes
           HL060PA1]
 gi|315103612|gb|EFT75588.1| recombination factor protein RarA [Propionibacterium acnes
           HL050PA2]
 gi|327327434|gb|EGE69210.1| replication-associated recombination protein A [Propionibacterium
           acnes HL103PA1]
          Length = 461

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 65/133 (48%), Gaps = 17/133 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPRT++E  GQ   +   S L+   E   A +     V   GPPG+GKTT+A VV+   
Sbjct: 35  LRPRTIDEIVGQQHLLTPGSPLRRLAEGTGAMS-----VFLWGPPGVGKTTIASVVSHAT 89

Query: 79  GVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
              F   S  V A   D+   L        L    VLF+DE+HR S   +++L PA+E+ 
Sbjct: 90  NRRFVEISA-VTAGVKDIRRELDTARRQLALGQPTVLFVDEVHRFSKAQQDVLLPAVENR 148

Query: 133 QLDLMVG--EGPS 143
            + L+    E PS
Sbjct: 149 TVTLIAATTENPS 161


>gi|78778465|ref|YP_396577.1| recombination factor protein RarA [Prochlorococcus marinus str. MIT
           9312]
 gi|78711964|gb|ABB49141.1| Recombination protein MgsA [Prochlorococcus marinus str. MIT 9312]
          Length = 429

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 88/174 (50%), Gaps = 25/174 (14%)

Query: 2   MDREGLLSRNVSQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M  E L + N SQ +++  L   LRP+ L++F GQ ++  N    + +A    + + + +
Sbjct: 1   MHSENLFT-NYSQIESNAPLADKLRPKNLDDFFGQ-KSILNENSLLRSAILN-DKISNFI 57

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAAL----------LTNLEDRDV 108
           F GPPG+GKTTL +++A     N RS    + A    +  L          L N + + +
Sbjct: 58  FSGPPGVGKTTLIEIIA----FNTRSKLIKLNAVLSSIKELRNEIANAKERLINTKRKTI 113

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSR---FTLI 157
           LFIDE+HR + + ++ L P++E+  +  +    E P     K  +SR   FTLI
Sbjct: 114 LFIDEVHRFTSVQQDALLPSIENGTITFIGATTENPFFAVNKALVSRSRIFTLI 167


>gi|254881703|ref|ZP_05254413.1| recombination factor protein RarA [Bacteroides sp. 4_3_47FAA]
 gi|319643669|ref|ZP_07998286.1| AAA family ATPase [Bacteroides sp. 3_1_40A]
 gi|254834496|gb|EET14805.1| recombination factor protein RarA [Bacteroides sp. 4_3_47FAA]
 gi|317384699|gb|EFV65661.1| AAA family ATPase [Bacteroides sp. 3_1_40A]
          Length = 425

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 76/147 (51%), Gaps = 18/147 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL+++ GQ   V   + L+  I+A +     +   +  GPPG+GKTTLAQ++A +L
Sbjct: 9   LRPKTLDDYIGQKHLVGPGAVLRKMIDAGR-----ISSFILWGPPGVGKTTLAQIIANKL 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V +   D+  ++          +   +LFIDEIHR S   ++ L  A+E 
Sbjct: 64  ETPFYTLSA-VTSGVKDVRDVIEKARSNRFFSQASPILFIDEIHRFSKSQQDSLLGAVET 122

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156
             + L+    E PS   ++  LSR  L
Sbjct: 123 GVVTLIGATTENPSFEVIRPLLSRCQL 149


>gi|239978419|ref|ZP_04700943.1| recombination factor protein RarA [Streptomyces albus J1074]
 gi|291450315|ref|ZP_06589705.1| recombination factor protein RarA [Streptomyces albus J1074]
 gi|291353264|gb|EFE80166.1| recombination factor protein RarA [Streptomyces albus J1074]
          Length = 454

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 62/127 (48%), Gaps = 11/127 (8%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL+E  GQ   ++  S L+  +            V   GPPG+GKTTLA VV++  
Sbjct: 27  MRPRTLDEVVGQQHLLKPGSPLRRLVGEGGGGPAGPSSVFLWGPPGIGKTTLAYVVSKAT 86

Query: 79  GVNFRSTSGPVIAKAGDLAALLT-------NLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
              F   S  + A   ++ A++              VLF+DEIHR S   ++ L PA+E+
Sbjct: 87  NKRFVELSA-ITAGVKEVRAVIDGARRASGGFGKETVLFLDEIHRFSKAQQDSLLPAVEN 145

Query: 132 FQLDLMV 138
             + L+ 
Sbjct: 146 RWVTLIA 152


>gi|254459950|ref|ZP_05073366.1| AAA ATPase, central region [Rhodobacterales bacterium HTCC2083]
 gi|206676539|gb|EDZ41026.1| AAA ATPase, central region [Rhodobacteraceae bacterium HTCC2083]
          Length = 436

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 71/137 (51%), Gaps = 14/137 (10%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP++L E  GQ +       L+V + +      +L  ++F GPPG+GKTT+A+++A E 
Sbjct: 24  LRPQSLAEVIGQKQVLGEGAPLEVMLSSG-----SLSSIVFWGPPGVGKTTIARLLAHET 78

Query: 79  GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
            ++F   S      P + K  + A +        +LF+DEIHR +   ++   P MED  
Sbjct: 79  ELHFVQISAIFTGMPDLRKVFEGAKIRRQNGQGTLLFVDEIHRFNKAQQDGFLPYMEDGT 138

Query: 134 LDLMVGEGPSARSVKIN 150
           + L+VG      S ++N
Sbjct: 139 I-LLVGATTENPSFELN 154


>gi|322419817|ref|YP_004199040.1| AAA ATPase central domain-containing protein [Geobacter sp. M18]
 gi|320126204|gb|ADW13764.1| AAA ATPase central domain protein [Geobacter sp. M18]
          Length = 434

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 70/265 (26%), Positives = 117/265 (44%), Gaps = 51/265 (19%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRT+ E+ GQ         L+  IE  +     +  ++F GPPG GKTTLA+++A   
Sbjct: 18  MRPRTISEYLGQGHLLGEGKLLRSLIETDR-----VTSLIFWGPPGSGKTTLARIIAGAT 72

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAME- 130
             +F   S  +++   ++  ++   E+       R +LF+DEIHR +   ++   P +E 
Sbjct: 73  KSHFIFFSA-IMSGIKEIREVVKEAEETLKYHGRRTILFVDEIHRFNKSQQDAFLPYVER 131

Query: 131 -DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             F +     E PS   +   LSR  +        L+ NPL +             E+++
Sbjct: 132 GTFTMIGATTENPSFEVIAPLLSRCKV--------LVLNPLSE-------------EEIR 170

Query: 190 TIVQ-------RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            I+Q       RG   + L    EA   +A ++ G  R+A   L  +   A +A  + IT
Sbjct: 171 QILQNALTDRERGLGESELTAAPEALAFMAEQAGGDARVA---LNTLETAARLARDREIT 227

Query: 243 REIADAALLR--LAIDKMGFDQLDL 265
            E A  A  +  L  DK G +  ++
Sbjct: 228 LETAREASQKKPLLYDKGGEEHYNV 252


>gi|229495215|ref|ZP_04388950.1| ATPase, AAA family [Porphyromonas endodontalis ATCC 35406]
 gi|229317658|gb|EEN83556.1| ATPase, AAA family [Porphyromonas endodontalis ATCC 35406]
          Length = 458

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/147 (34%), Positives = 74/147 (50%), Gaps = 21/147 (14%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP TLEE+ GQ   V   + L   I + K     +  ++  GPPG+GKTTLA+++A+ +
Sbjct: 33  MRPTTLEEYVGQRHIVAETAPLGRMIRSGK-----VPSLILWGPPGVGKTTLAELIAQSV 87

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE----------DRDVLFIDEIHRLSIIVEEILYPA 128
              F   S  V +  GD+  +L   E           R +LFIDEIHR S   ++ L  A
Sbjct: 88  EAPFYKLSA-VGSGVGDVRRVLEEAERSTQGFFAAKSRPLLFIDEIHRFSKSQQDSLLAA 146

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSR 153
           +E   + L+    E PS   ++  LSR
Sbjct: 147 VERGIVTLIGATTENPSFEVIRPLLSR 173


>gi|306836214|ref|ZP_07469198.1| replication-associated recombination protein A [Corynebacterium
           accolens ATCC 49726]
 gi|304567935|gb|EFM43516.1| replication-associated recombination protein A [Corynebacterium
           accolens ATCC 49726]
          Length = 461

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 66/130 (50%), Gaps = 11/130 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+TLEE  GQ       K      +   EA   V+  GPPG GKTT+A ++A ++G N
Sbjct: 44  MRPQTLEEVVGQDHLLGPGKPLRRLVEGSGEA--SVILYGPPGTGKTTIASLIASQMGQN 101

Query: 82  FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F   S  + +    +  ++T+         R VLFIDE+HR S   ++ L  A+E+  + 
Sbjct: 102 FVGLSA-LDSGVKQVREVITHARQELIHGRRTVLFIDEVHRFSKTQQDALLAAVENRTVL 160

Query: 136 LMVG--EGPS 143
           L+    E PS
Sbjct: 161 LVAATTENPS 170


>gi|256028561|ref|ZP_05442395.1| recombination factor protein RarA [Fusobacterium sp. D11]
 gi|289766481|ref|ZP_06525859.1| ATPase [Fusobacterium sp. D11]
 gi|289718036|gb|EFD82048.1| ATPase [Fusobacterium sp. D11]
          Length = 407

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 93/214 (43%), Gaps = 41/214 (19%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP++L++F GQ +      V           L + +F GPPG GK++L ++++  L  N
Sbjct: 18  LRPKSLDDFVGQEKLLGKDGVITRLI--LNSTLSNSIFYGPPGCGKSSLGEIISNTLDCN 75

Query: 82  FRSTSGPVIAKAGDLAALLT----NLE---DRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F   +    A   D+  ++     N+E    R +LF+DEIHR +   ++ L    ED  L
Sbjct: 76  FEKLNATT-ASVSDIRNVVETARRNIELYNKRTILFLDEIHRFNKNQQDALLSYTEDGTL 134

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEI-----EDL 188
                               TLI ATT      NP  +    +  R+  +E      ED+
Sbjct: 135 --------------------TLIGATTE-----NPYYNINNALLSRVMVFEFKALTNEDI 169

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
             ++ +G     ++++D+    I   S+G  RIA
Sbjct: 170 LKLINKGLNFLNISMSDKIKEIIVDISQGDSRIA 203


>gi|314931757|gb|EFS95588.1| recombination factor protein RarA [Propionibacterium acnes
           HL067PA1]
          Length = 462

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 65/133 (48%), Gaps = 17/133 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPRT++E  GQ   +   S L+   E   A +     V   GPPG+GKTT+A VV+   
Sbjct: 36  LRPRTIDEIVGQQHLLTPGSPLRRLAEGTGAMS-----VFLWGPPGVGKTTIASVVSHAT 90

Query: 79  GVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
              F   S  V A   D+   L        L    VLF+DE+HR S   +++L PA+E+ 
Sbjct: 91  NRRFVEISA-VTAGVKDIRRELDTARRQLALGQPTVLFVDEVHRFSKAQQDVLLPAVENR 149

Query: 133 QLDLMVG--EGPS 143
            + L+    E PS
Sbjct: 150 TVTLIAATTENPS 162


>gi|313764302|gb|EFS35666.1| recombination factor protein RarA [Propionibacterium acnes
           HL013PA1]
 gi|313816210|gb|EFS53924.1| recombination factor protein RarA [Propionibacterium acnes
           HL059PA1]
 gi|314915292|gb|EFS79123.1| recombination factor protein RarA [Propionibacterium acnes
           HL005PA4]
 gi|314918158|gb|EFS81989.1| recombination factor protein RarA [Propionibacterium acnes
           HL050PA1]
 gi|314920234|gb|EFS84065.1| recombination factor protein RarA [Propionibacterium acnes
           HL050PA3]
 gi|314955559|gb|EFS99960.1| recombination factor protein RarA [Propionibacterium acnes
           HL027PA1]
 gi|314958054|gb|EFT02157.1| recombination factor protein RarA [Propionibacterium acnes
           HL002PA1]
 gi|315098686|gb|EFT70662.1| recombination factor protein RarA [Propionibacterium acnes
           HL059PA2]
 gi|315108666|gb|EFT80642.1| recombination factor protein RarA [Propionibacterium acnes
           HL030PA2]
 gi|327330408|gb|EGE72157.1| replication-associated recombination protein A [Propionibacterium
           acnes HL097PA1]
 gi|327450630|gb|EGE97284.1| recombination factor protein RarA [Propionibacterium acnes
           HL087PA3]
 gi|327454032|gb|EGF00687.1| recombination factor protein RarA [Propionibacterium acnes
           HL083PA2]
 gi|328753290|gb|EGF66906.1| recombination factor protein RarA [Propionibacterium acnes
           HL025PA2]
 gi|328754048|gb|EGF67664.1| recombination factor protein RarA [Propionibacterium acnes
           HL087PA1]
          Length = 462

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 65/133 (48%), Gaps = 17/133 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPRT++E  GQ   +   S L+   E   A +     V   GPPG+GKTT+A VV+   
Sbjct: 36  LRPRTIDEIVGQQHLLTPGSPLRRLAEGTGAMS-----VFLWGPPGVGKTTIASVVSHAT 90

Query: 79  GVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
              F   S  V A   D+   L        L    VLF+DE+HR S   +++L PA+E+ 
Sbjct: 91  NRRFVEISA-VTAGVKDIRRELDTARRQLALGQPTVLFVDEVHRFSKAQQDVLLPAVENR 149

Query: 133 QLDLMVG--EGPS 143
            + L+    E PS
Sbjct: 150 TVTLIAATTENPS 162


>gi|237744015|ref|ZP_04574496.1| ATPase [Fusobacterium sp. 7_1]
 gi|260494399|ref|ZP_05814530.1| ATPase [Fusobacterium sp. 3_1_33]
 gi|229431244|gb|EEO41456.1| ATPase [Fusobacterium sp. 7_1]
 gi|260198545|gb|EEW96061.1| ATPase [Fusobacterium sp. 3_1_33]
          Length = 407

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 93/214 (43%), Gaps = 41/214 (19%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP++L++F GQ +      V           L + +F GPPG GK++L ++++  L  N
Sbjct: 18  LRPKSLDDFVGQEKLLGKDGVITRLI--LNSTLSNSIFYGPPGCGKSSLGEIISNTLDCN 75

Query: 82  FRSTSGPVIAKAGDLAALLT----NLE---DRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F   +    A   D+  ++     N+E    R +LF+DEIHR +   ++ L    ED  L
Sbjct: 76  FEKLNATT-ASVSDIRNVVETARRNIELYNKRTILFLDEIHRFNKNQQDALLSYTEDGTL 134

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEI-----EDL 188
                               TLI ATT      NP  +    +  R+  +E      ED+
Sbjct: 135 --------------------TLIGATTE-----NPYYNINNALLSRVMVFEFKALTNEDI 169

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
             ++ +G     ++++D+    I   S+G  RIA
Sbjct: 170 LKLINKGLNFLNISMSDKIKEIIVDISQGDSRIA 203


>gi|307260915|ref|ZP_07542601.1| Replication-associated recombination protein A [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306869482|gb|EFN01273.1| Replication-associated recombination protein A [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 443

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 80/168 (47%), Gaps = 22/168 (13%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +R RTL E+ GQ         L+  IEA  + +     ++F GPPG GKTTLA+++A   
Sbjct: 16  MRSRTLAEYIGQAHLIGEGKPLRRAIEAGHSHS-----MIFWGPPGTGKTTLAEIIAHHF 70

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
                     TSG   I +A + A L      R +LF+DE+HR +   ++   P +ED  
Sbjct: 71  DAEVERLSAVTSGVKEIREAIERAKLNRQTGRRTLLFVDEVHRFNKSQQDAFLPHIEDGT 130

Query: 134 LDLMVGEGPSARSVKIN---LSRFTL-----IAATTRVGLLTNPLQDR 173
           + + +G      S ++N   LSR  +     + A     +LTN L D+
Sbjct: 131 I-IFIGATTENPSFELNNALLSRAKIYILKPLQAVEIAQVLTNALYDK 177


>gi|304373330|ref|YP_003856539.1| ATPase family associated with various cellular activities
           [Mycoplasma hyorhinis HUB-1]
 gi|304309521|gb|ADM22001.1| ATPase family associated with various cellular activities
           [Mycoplasma hyorhinis HUB-1]
          Length = 405

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 58/109 (53%), Gaps = 9/109 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP  LEEF GQ    + L+  I+     +      +F GP G GKT+LA ++A+ L + 
Sbjct: 6   LRPENLEEFVGQPHLRTLLEKLIQTQDKSS-----FIFYGPSGTGKTSLAILLAKNLNLK 60

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           F   +  +  K+     LL  ++D  V+ IDE+HRL+   ++IL   +E
Sbjct: 61  FDIFNATIENKSD----LLQKIKDNQVVIIDEVHRLNKDKQDILLSHLE 105


>gi|154253206|ref|YP_001414030.1| recombination factor protein RarA [Parvibaculum lavamentivorans
           DS-1]
 gi|154157156|gb|ABS64373.1| AAA ATPase central domain protein [Parvibaculum lavamentivorans
           DS-1]
          Length = 434

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/130 (34%), Positives = 66/130 (50%), Gaps = 11/130 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ LEE  GQ E     K  +    A+   L  V+F GPPG GKTT+A+++A  +G++
Sbjct: 22  LRPKVLEEVVGQ-EHLIGPKGPLGRMLAQGH-LSSVIFWGPPGTGKTTIARLLADRVGLH 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F   S  + +   DL  +      R       +LF+DEIHR +   ++   P MED  + 
Sbjct: 80  FEPMSA-IFSGVADLKKIFEAARGRRSTGKGTLLFVDEIHRFNRAQQDSFLPVMEDGTVT 138

Query: 136 LM--VGEGPS 143
           L+    E PS
Sbjct: 139 LVGATTENPS 148


>gi|321264368|ref|XP_003196901.1| DNA-dependent ATPase MGS1 (Maintenance of genome stability protein
           1) [Cryptococcus gattii WM276]
 gi|317463379|gb|ADV25114.1| DNA-dependent ATPase MGS1 (Maintenance of genome stability protein
           1), putative [Cryptococcus gattii WM276]
          Length = 627

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 77/154 (50%), Gaps = 22/154 (14%)

Query: 23  RPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           RP  + ++ GQ   V   S L+V IEA K     +   +  GPPG GKTTLA+++A+  G
Sbjct: 147 RPLEISQYIGQSDIVGPGSLLRVQIEAGKL----IGSCILWGPPGCGKTTLARLIAKSSG 202

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDF 132
            +F+  S    +   D+  +    ++       R VL IDEIHR +   +++L P +E  
Sbjct: 203 ADFKELSA-TSSGTQDVRQVFEKAKNGLQMTGRRTVLMIDEIHRFNRAQQDLLLPYVEKG 261

Query: 133 QLDLMVGEGPSARSVKIN---LSR---FTLIAAT 160
            + L +G      S K+N   LSR   FTL A +
Sbjct: 262 WIQL-IGATTENPSFKVNGALLSRCQVFTLHAHS 294


>gi|313771979|gb|EFS37945.1| recombination factor protein RarA [Propionibacterium acnes
           HL074PA1]
 gi|313810179|gb|EFS47900.1| recombination factor protein RarA [Propionibacterium acnes
           HL083PA1]
 gi|313830510|gb|EFS68224.1| recombination factor protein RarA [Propionibacterium acnes
           HL007PA1]
 gi|313833546|gb|EFS71260.1| recombination factor protein RarA [Propionibacterium acnes
           HL056PA1]
 gi|314973510|gb|EFT17606.1| recombination factor protein RarA [Propionibacterium acnes
           HL053PA1]
 gi|314976190|gb|EFT20285.1| recombination factor protein RarA [Propionibacterium acnes
           HL045PA1]
 gi|314983788|gb|EFT27880.1| recombination factor protein RarA [Propionibacterium acnes
           HL005PA1]
 gi|315096057|gb|EFT68033.1| recombination factor protein RarA [Propionibacterium acnes
           HL038PA1]
 gi|327326337|gb|EGE68127.1| replication-associated recombination protein A [Propionibacterium
           acnes HL096PA2]
 gi|327445769|gb|EGE92423.1| recombination factor protein RarA [Propionibacterium acnes
           HL043PA2]
 gi|327448248|gb|EGE94902.1| recombination factor protein RarA [Propionibacterium acnes
           HL043PA1]
 gi|328760701|gb|EGF74267.1| replication-associated recombination protein A [Propionibacterium
           acnes HL099PA1]
          Length = 462

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 65/133 (48%), Gaps = 17/133 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPRT++E  GQ   +   S L+   E   A +     V   GPPG+GKTT+A VV+   
Sbjct: 36  LRPRTIDEIVGQQHLLTPGSPLRRLAEGTGAMS-----VFLWGPPGVGKTTIASVVSHAT 90

Query: 79  GVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
              F   S  V A   D+   L        L    VLF+DE+HR S   +++L PA+E+ 
Sbjct: 91  NRRFVEISA-VTAGVKDIRRELDTARRQLALGQPTVLFVDEVHRFSKAQQDVLLPAVENR 149

Query: 133 QLDLMVG--EGPS 143
            + L+    E PS
Sbjct: 150 TVTLIAATTENPS 162


>gi|289425515|ref|ZP_06427292.1| recombination factor protein RarA [Propionibacterium acnes SK187]
 gi|289428610|ref|ZP_06430294.1| recombination factor protein RarA [Propionibacterium acnes J165]
 gi|289154493|gb|EFD03181.1| recombination factor protein RarA [Propionibacterium acnes SK187]
 gi|289158304|gb|EFD06523.1| recombination factor protein RarA [Propionibacterium acnes J165]
 gi|313791989|gb|EFS40090.1| recombination factor protein RarA [Propionibacterium acnes
           HL110PA1]
 gi|313802061|gb|EFS43295.1| recombination factor protein RarA [Propionibacterium acnes
           HL110PA2]
 gi|313807672|gb|EFS46159.1| recombination factor protein RarA [Propionibacterium acnes
           HL087PA2]
 gi|313812793|gb|EFS50507.1| recombination factor protein RarA [Propionibacterium acnes
           HL025PA1]
 gi|313818709|gb|EFS56423.1| recombination factor protein RarA [Propionibacterium acnes
           HL046PA2]
 gi|313820479|gb|EFS58193.1| recombination factor protein RarA [Propionibacterium acnes
           HL036PA1]
 gi|313822715|gb|EFS60429.1| recombination factor protein RarA [Propionibacterium acnes
           HL036PA2]
 gi|313825351|gb|EFS63065.1| recombination factor protein RarA [Propionibacterium acnes
           HL063PA1]
 gi|313838882|gb|EFS76596.1| recombination factor protein RarA [Propionibacterium acnes
           HL086PA1]
 gi|314925088|gb|EFS88919.1| recombination factor protein RarA [Propionibacterium acnes
           HL036PA3]
 gi|314960375|gb|EFT04477.1| recombination factor protein RarA [Propionibacterium acnes
           HL002PA2]
 gi|314962645|gb|EFT06745.1| recombination factor protein RarA [Propionibacterium acnes
           HL082PA1]
 gi|314987969|gb|EFT32060.1| recombination factor protein RarA [Propionibacterium acnes
           HL005PA2]
 gi|314989779|gb|EFT33870.1| recombination factor protein RarA [Propionibacterium acnes
           HL005PA3]
 gi|315077861|gb|EFT49912.1| recombination factor protein RarA [Propionibacterium acnes
           HL053PA2]
 gi|315080486|gb|EFT52462.1| recombination factor protein RarA [Propionibacterium acnes
           HL078PA1]
 gi|315084157|gb|EFT56133.1| recombination factor protein RarA [Propionibacterium acnes
           HL027PA2]
 gi|315085500|gb|EFT57476.1| recombination factor protein RarA [Propionibacterium acnes
           HL002PA3]
 gi|315088443|gb|EFT60419.1| recombination factor protein RarA [Propionibacterium acnes
           HL072PA1]
 gi|315105746|gb|EFT77722.1| recombination factor protein RarA [Propionibacterium acnes
           HL030PA1]
 gi|327331788|gb|EGE73525.1| replication-associated recombination protein A [Propionibacterium
           acnes HL096PA3]
 gi|327443565|gb|EGE90219.1| recombination factor protein RarA [Propionibacterium acnes
           HL013PA2]
 gi|327453292|gb|EGE99946.1| recombination factor protein RarA [Propionibacterium acnes
           HL092PA1]
 gi|328753320|gb|EGF66936.1| recombination factor protein RarA [Propionibacterium acnes
           HL020PA1]
 gi|332675579|gb|AEE72395.1| AAA domain-containing protein [Propionibacterium acnes 266]
          Length = 462

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 65/133 (48%), Gaps = 17/133 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPRT++E  GQ   +   S L+   E   A +     V   GPPG+GKTT+A VV+   
Sbjct: 36  LRPRTIDEIVGQQHLLTPGSPLRRLAEGTGAMS-----VFLWGPPGVGKTTIASVVSHAT 90

Query: 79  GVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
              F   S  V A   D+   L        L    VLF+DE+HR S   +++L PA+E+ 
Sbjct: 91  NRRFVEISA-VTAGVKDIRRELDTARRQLALGQPTVLFVDEVHRFSKAQQDVLLPAVENR 149

Query: 133 QLDLMVG--EGPS 143
            + L+    E PS
Sbjct: 150 TVTLIAATTENPS 162


>gi|260888003|ref|ZP_05899266.1| replication-associated recombination protein A [Selenomonas
           sputigena ATCC 35185]
 gi|260862254|gb|EEX76754.1| replication-associated recombination protein A [Selenomonas
           sputigena ATCC 35185]
          Length = 450

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 81/159 (50%), Gaps = 20/159 (12%)

Query: 2   MDREGLLSRNVSQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAE-ALDHV 57
           M++E L  R V     D+ L   +RP++L ++ GQ       K+     K  AE  +  +
Sbjct: 11  MEQESLFRREV-----DLPLAARMRPKSLADYVGQQHLVGKGKML---RKLIAEDKIFSM 62

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFI 111
           +F GPPG+GKTTLA+++ARE    F   S  V +   ++  ++   E      +R +LF+
Sbjct: 63  IFWGPPGVGKTTLARIIARETKARFIDFSA-VTSGIKEIRTVMQEAEKNTAYGERTILFV 121

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN 150
           DEIHR +   ++   P +E   + +++G      S +IN
Sbjct: 122 DEIHRFNKAQQDAFLPFVEKGSI-ILIGATTENPSFEIN 159


>gi|104781339|ref|YP_607837.1| recombination factor protein RarA [Pseudomonas entomophila L48]
 gi|95110326|emb|CAK15033.1| DNA-dependant ATPase [Pseudomonas entomophila L48]
          Length = 441

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 71/135 (52%), Gaps = 9/135 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP  L+E+ GQ    +  K   EA +    AL  ++F GPPG+GKTTLA+++A+    +
Sbjct: 17  LRPSNLDEYVGQEHLLARGKPLREALEQ--GALHSMIFWGPPGVGKTTLARLLAQFCDAH 74

Query: 82  FRSTSGPV-----IAKAGDLAALLT-NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F + S  +     I +A ++A         R +LF+DE+HR +   ++   P +ED  L 
Sbjct: 75  FETVSAVLAGVKEIRQAVEVAKQQAGQYGRRTILFVDEVHRFNKSQQDAFLPYVEDGTL- 133

Query: 136 LMVGEGPSARSVKIN 150
           + +G      S ++N
Sbjct: 134 IFIGATTENPSFELN 148


>gi|314978649|gb|EFT22743.1| recombination factor protein RarA [Propionibacterium acnes
           HL072PA2]
          Length = 462

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 65/133 (48%), Gaps = 17/133 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPRT++E  GQ   +   S L+   E   A +     V   GPPG+GKTT+A VV+   
Sbjct: 36  LRPRTIDEIVGQQHLLTPGSPLRRLAEGTGAMS-----VFLWGPPGVGKTTIASVVSHAT 90

Query: 79  GVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
              F   S  V A   D+   L        L    VLF+DE+HR S   +++L PA+E+ 
Sbjct: 91  NRRFVEISA-VTAGVKDIRRELDTARRQLALGQPTVLFVDEVHRFSKAQQDVLLPAVENR 149

Query: 133 QLDLMVG--EGPS 143
            + L+    E PS
Sbjct: 150 TVTLIAATTENPS 162


>gi|314967490|gb|EFT11589.1| recombination factor protein RarA [Propionibacterium acnes
           HL037PA1]
          Length = 462

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 65/133 (48%), Gaps = 17/133 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPRT++E  GQ   +   S L+   E   A +     V   GPPG+GKTT+A VV+   
Sbjct: 36  LRPRTIDEIVGQQHLLTPGSPLRRLAEGTGAMS-----VFLWGPPGVGKTTIASVVSHAT 90

Query: 79  GVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
              F   S  V A   D+   L        L    VLF+DE+HR S   +++L PA+E+ 
Sbjct: 91  NRRFVEISA-VTAGVKDIRRELDTARRQLALGQPTVLFVDEVHRFSKAQQDVLLPAVENR 149

Query: 133 QLDLMVG--EGPS 143
            + L+    E PS
Sbjct: 150 TVTLIAATTENPS 162


>gi|295130734|ref|YP_003581397.1| recombination factor protein RarA [Propionibacterium acnes SK137]
 gi|291376409|gb|ADE00264.1| recombination factor protein RarA [Propionibacterium acnes SK137]
          Length = 461

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 65/133 (48%), Gaps = 17/133 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPRT++E  GQ   +   S L+   E   A +     V   GPPG+GKTT+A VV+   
Sbjct: 35  LRPRTIDEIVGQQHLLTPGSPLRRLAEGTGAMS-----VFLWGPPGVGKTTIASVVSHAT 89

Query: 79  GVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
              F   S  V A   D+   L        L    VLF+DE+HR S   +++L PA+E+ 
Sbjct: 90  NRRFVEISA-VTAGVKDIRRELDTARRQLALGQPTVLFVDEVHRFSKAQQDVLLPAVENR 148

Query: 133 QLDLMVG--EGPS 143
            + L+    E PS
Sbjct: 149 TVTLIAATTENPS 161


>gi|332521647|ref|ZP_08398100.1| AAA ATPase central domain protein [Lacinutrix algicola 5H-3-7-4]
 gi|332042736|gb|EGI78936.1| AAA ATPase central domain protein [Lacinutrix algicola 5H-3-7-4]
          Length = 425

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 80/185 (43%), Gaps = 36/185 (19%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+TLE++  Q +         +  + +   +  ++  GPPG+GKTTLA ++A E    
Sbjct: 9   LRPKTLEDYVSQSQLVGKQGALTK--QIQQGLIPSIILWGPPGIGKTTLANIIANESKRP 66

Query: 82  FRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           F + S           VI KA     L T      +LFIDEIHR S   ++ L  A+E  
Sbjct: 67  FYTLSAISSGVKDVREVIEKAKQSGGLFTT--KNPILFIDEIHRFSKSQQDSLLQAVEKG 124

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
            + L+    E PS   +   LSR  +                       LN +E +DL+ 
Sbjct: 125 WVTLIGATTENPSFEVIPALLSRCQVYI---------------------LNAFEKKDLEL 163

Query: 191 IVQRG 195
           ++QR 
Sbjct: 164 LLQRA 168


>gi|212691432|ref|ZP_03299560.1| hypothetical protein BACDOR_00924 [Bacteroides dorei DSM 17855]
 gi|237726280|ref|ZP_04556761.1| recombination factor protein RarA [Bacteroides sp. D4]
 gi|212666042|gb|EEB26614.1| hypothetical protein BACDOR_00924 [Bacteroides dorei DSM 17855]
 gi|229434806|gb|EEO44883.1| recombination factor protein RarA [Bacteroides dorei 5_1_36/D4]
          Length = 425

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 76/147 (51%), Gaps = 18/147 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL+++ GQ   V   + L+  I+A +     +   +  GPPG+GKTTLAQ++A +L
Sbjct: 9   LRPKTLDDYIGQKHLVGPGAVLRKMIDAGR-----ISSFILWGPPGVGKTTLAQIIANKL 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V +   D+  ++          +   +LFIDEIHR S   ++ L  A+E 
Sbjct: 64  ETPFYTLSA-VTSGVKDVRDVIEKARSNRFFSQASPILFIDEIHRFSKSQQDSLLGAVET 122

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156
             + L+    E PS   ++  LSR  L
Sbjct: 123 GVVTLIGATTENPSFEVIRPLLSRCQL 149


>gi|300727152|ref|ZP_07060571.1| ATPase, AAA family [Prevotella bryantii B14]
 gi|299775696|gb|EFI72287.1| ATPase, AAA family [Prevotella bryantii B14]
          Length = 423

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/149 (35%), Positives = 75/149 (50%), Gaps = 22/149 (14%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL+E+ GQ   V   + L+  I+A +     +   +  GPPG+GKTTLA ++A +L
Sbjct: 9   MRPRTLDEYVGQKHLVGEGAVLRNMIDAGR-----IPSFILWGPPGVGKTTLAHIIANKL 63

Query: 79  GVNFRS----TSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
              F +    TSG      VI KA       T      +LFIDEIHR S   ++ L  A+
Sbjct: 64  ETPFYTLSAVTSGVKDVREVIDKAAKSQFFNTI---SPILFIDEIHRFSKSQQDSLLGAV 120

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTL 156
           E   + L+    E PS   ++  LSR  L
Sbjct: 121 ERGTVTLIGATTENPSFEVIRPLLSRCQL 149


>gi|50842656|ref|YP_055883.1| recombination factor protein RarA [Propionibacterium acnes
           KPA171202]
 gi|50840258|gb|AAT82925.1| uncharacterized ATPase related to the helicase subunit of the
           holliday junction resolvase [Propionibacterium acnes
           KPA171202]
          Length = 461

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 65/133 (48%), Gaps = 17/133 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPRT++E  GQ   +   S L+   E   A +     V   GPPG+GKTT+A VV+   
Sbjct: 35  LRPRTIDEIVGQQHLLTPGSPLRRLAEGTGAMS-----VFLWGPPGVGKTTIASVVSHAT 89

Query: 79  GVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
              F   S  V A   D+   L        L    VLF+DE+HR S   +++L PA+E+ 
Sbjct: 90  NRRFVEISA-VTAGVKDIRRELDTARRQLALGQPTVLFVDEVHRFSKAQQDVLLPAVENR 148

Query: 133 QLDLMVG--EGPS 143
            + L+    E PS
Sbjct: 149 TVTLIAATTENPS 161


>gi|150006392|ref|YP_001301136.1| recombination factor protein RarA [Bacteroides vulgatus ATCC 8482]
 gi|149934816|gb|ABR41514.1| putative ATPase, AAA family [Bacteroides vulgatus ATCC 8482]
          Length = 425

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 76/147 (51%), Gaps = 18/147 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL+++ GQ   V   + L+  I+A +     +   +  GPPG+GKTTLAQ++A +L
Sbjct: 9   LRPKTLDDYIGQKHLVGPGAVLRKMIDAGR-----ISSFILWGPPGVGKTTLAQIIANKL 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V +   D+  ++          +   +LFIDEIHR S   ++ L  A+E 
Sbjct: 64  ETPFYTLSA-VTSGVKDVRDVIEKARSNRFFSQASPILFIDEIHRFSKSQQDSLLGAVET 122

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156
             + L+    E PS   ++  LSR  L
Sbjct: 123 GVVTLIGATTENPSFEVIRPLLSRCQL 149


>gi|226944894|ref|YP_002799967.1| recombination factor protein RarA [Azotobacter vinelandii DJ]
 gi|226719821|gb|ACO78992.1| recombination factor protein RarA [Azotobacter vinelandii DJ]
          Length = 441

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 72/135 (53%), Gaps = 9/135 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP +L+E+ GQ    +  K   EA +    AL  ++F GPPG+GKTTLA+++A+    +
Sbjct: 17  LRPASLDEYVGQEHLLARGKPLREALEQ--GALHSMIFWGPPGVGKTTLARLLAKVTDAH 74

Query: 82  FRSTSGPV-----IAKAGDLAALLTNLED-RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F + S  +     I +A ++A         R +LF+DE+HR +   ++   P +ED  L 
Sbjct: 75  FETISAVLAGVKEIRQAVEIARQQAAQHGRRTILFVDEVHRFNKSQQDAFLPYVEDGTL- 133

Query: 136 LMVGEGPSARSVKIN 150
           + +G      S ++N
Sbjct: 134 IFIGATTENPSFELN 148


>gi|237712129|ref|ZP_04542610.1| recombination factor protein RarA [Bacteroides sp. 9_1_42FAA]
 gi|229453450|gb|EEO59171.1| recombination factor protein RarA [Bacteroides sp. 9_1_42FAA]
          Length = 425

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 76/147 (51%), Gaps = 18/147 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL+++ GQ   V   + L+  I+A +     +   +  GPPG+GKTTLAQ++A +L
Sbjct: 9   LRPKTLDDYIGQKHLVGPGAVLRKMIDAGR-----ISSFILWGPPGVGKTTLAQIIANKL 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V +   D+  ++          +   +LFIDEIHR S   ++ L  A+E 
Sbjct: 64  ETPFYTLSA-VTSGVKDVRDVIEKARSNRFFSQASPILFIDEIHRFSKSQQDSLLGAVET 122

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156
             + L+    E PS   ++  LSR  L
Sbjct: 123 GVVTLIGATTENPSFEVIRPLLSRCQL 149


>gi|238926943|ref|ZP_04658703.1| recombination ATPase [Selenomonas flueggei ATCC 43531]
 gi|238885177|gb|EEQ48815.1| recombination ATPase [Selenomonas flueggei ATCC 43531]
          Length = 447

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 82/159 (51%), Gaps = 19/159 (11%)

Query: 2   MDREG-LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVF---IEAAKARAEALDHV 57
           MD +G L +R   Q  A+   +RPRTL++F GQ       K+    IE+ +     +  +
Sbjct: 3   MDEQGRLFARAAYQPLAE--RVRPRTLDDFVGQEHLLGQGKILRRLIESDR-----ITSM 55

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFI 111
           +F GPPG+GKTTLAQ++A      F + S  V +   ++  ++   +      +R V+F+
Sbjct: 56  IFWGPPGVGKTTLAQIIAARTKAEFITFSA-VTSGIKEIRTVMQEADRRRMYGERIVVFV 114

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN 150
           DEIHR +   ++   P +E   + +++G      S +IN
Sbjct: 115 DEIHRFNKAQQDAFLPFVEKGSI-VLIGATTENPSFEIN 152


>gi|330838519|ref|YP_004413099.1| AAA ATPase central domain protein [Selenomonas sputigena ATCC
           35185]
 gi|329746283|gb|AEB99639.1| AAA ATPase central domain protein [Selenomonas sputigena ATCC
           35185]
          Length = 442

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 81/159 (50%), Gaps = 20/159 (12%)

Query: 2   MDREGLLSRNVSQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAE-ALDHV 57
           M++E L  R V     D+ L   +RP++L ++ GQ       K+     K  AE  +  +
Sbjct: 3   MEQESLFRREV-----DLPLAARMRPKSLADYVGQQHLVGKGKML---RKLIAEDKIFSM 54

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFI 111
           +F GPPG+GKTTLA+++ARE    F   S  V +   ++  ++   E      +R +LF+
Sbjct: 55  IFWGPPGVGKTTLARIIARETKARFIDFSA-VTSGIKEIRTVMQEAEKNTAYGERTILFV 113

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN 150
           DEIHR +   ++   P +E   + +++G      S +IN
Sbjct: 114 DEIHRFNKAQQDAFLPFVEKGSI-ILIGATTENPSFEIN 151


>gi|260593081|ref|ZP_05858539.1| ATPase, AAA family [Prevotella veroralis F0319]
 gi|260534967|gb|EEX17584.1| ATPase, AAA family [Prevotella veroralis F0319]
          Length = 400

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 75/147 (51%), Gaps = 18/147 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL+E+ GQ   V   + L+  I++       +   +  GPPG+GKTTLAQ++A +L
Sbjct: 8   MRPRTLDEYIGQEHLVGQGAVLRRMIDSGH-----ISSFILWGPPGVGKTTLAQIIAHQL 62

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V +   D+  ++   +          +LFIDEIHR S   ++ L  A+E 
Sbjct: 63  ETPFYTLSA-VTSGVKDVREVIERAKSGRFFNSVSPILFIDEIHRFSKSQQDSLLGAVER 121

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156
             + L+    E PS   ++  LSR  L
Sbjct: 122 GVVTLIGATTENPSFEVIRPLLSRCQL 148


>gi|326329811|ref|ZP_08196131.1| ATPase, AAA family [Nocardioidaceae bacterium Broad-1]
 gi|325952397|gb|EGD44417.1| ATPase, AAA family [Nocardioidaceae bacterium Broad-1]
          Length = 448

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 60/125 (48%), Gaps = 14/125 (11%)

Query: 22  LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTLEE  GQ     A S L   +E  ++ +     +L  GPPG GKTT+A +V+R  
Sbjct: 32  MRPRTLEELVGQSSLRAAGSPLHQVVEGGQSLS-----LLLWGPPGTGKTTIASIVSRST 86

Query: 79  GVNFRSTSG------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
              F   S        V A      A L       VLF+DE+HR S   ++ L P +E+ 
Sbjct: 87  DRRFVEISAVSAGVKEVRAAIDSARAELVATGKETVLFVDEVHRFSKAQQDALLPGVENR 146

Query: 133 QLDLM 137
            + L+
Sbjct: 147 WVTLV 151


>gi|325856575|ref|ZP_08172242.1| ATPase, AAA family [Prevotella denticola CRIS 18C-A]
 gi|325483423|gb|EGC86397.1| ATPase, AAA family [Prevotella denticola CRIS 18C-A]
          Length = 406

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 76/147 (51%), Gaps = 18/147 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL+++ GQ   V   + L+  I++ +     +   +  GPPG+GKTTLAQ++A  L
Sbjct: 8   MRPRTLDDYIGQQHLVGEGAVLRRMIDSGR-----IASFILWGPPGVGKTTLAQIIAHRL 62

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V +   D+  ++   ++         +LFIDEIHR S   ++ L  A+E 
Sbjct: 63  ETPFYTLSA-VTSGVKDVRDVIERAQNGRFFNSASPILFIDEIHRFSKSQQDSLLGAVEK 121

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156
             + L+    E PS   ++  LSR  L
Sbjct: 122 GTVTLIGATTENPSFEVIRPLLSRCQL 148


>gi|282866228|ref|ZP_06275275.1| AAA ATPase central domain protein [Streptomyces sp. ACTE]
 gi|282559012|gb|EFB64567.1| AAA ATPase central domain protein [Streptomyces sp. ACTE]
          Length = 431

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 63/127 (49%), Gaps = 11/127 (8%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL+E  GQ   ++  S L+  +  A         V+  GPPG GKTTLA VV++  
Sbjct: 1   MRPRTLDEVVGQQHLLKPGSPLRRLVGEAGGGPAGPSSVILWGPPGTGKTTLAYVVSKAT 60

Query: 79  GVNFRSTSGPVIAKAGDLAALLT-------NLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
              F   S  + A   ++ A++              VLF+DEIHR S   ++ L PA+E+
Sbjct: 61  NKRFVELSA-ITAGVKEVRAVIEGARRATGGFGKETVLFLDEIHRFSKAQQDSLLPAVEN 119

Query: 132 FQLDLMV 138
             + L+ 
Sbjct: 120 RWVTLIA 126


>gi|256845830|ref|ZP_05551288.1| ATPase [Fusobacterium sp. 3_1_36A2]
 gi|256719389|gb|EEU32944.1| ATPase [Fusobacterium sp. 3_1_36A2]
          Length = 407

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 97/230 (42%), Gaps = 41/230 (17%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            L  +N    +     LRP++LE+F GQ +      V           L + +F GPPG 
Sbjct: 2   NLFQKNYKNVEPLAYKLRPKSLEDFVGQEKLLGKDGVITRLI--LNSTLSNSIFYGPPGC 59

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLT----NLE---DRDVLFIDEIHRLS 118
           GK++L ++++  L  NF   +    A   D+  ++     N+E    R +LF+DEIHR +
Sbjct: 60  GKSSLGEIISNTLDCNFEKLNATT-ASVSDIRNVVETARRNIELYNKRTILFLDEIHRFN 118

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIP 177
              ++ L    ED  L                    TLI ATT      NP  +    + 
Sbjct: 119 KNQQDALLSYTEDGTL--------------------TLIGATTE-----NPYYNINNALL 153

Query: 178 IRLNFYEI-----EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
            R+  +E      +D+  ++ +G     ++++D+    I   S+G  RIA
Sbjct: 154 SRVMVFEFKALTNKDILKLINKGLNFLNISMSDKIKEIIVDISQGDSRIA 203


>gi|294628351|ref|ZP_06706911.1| AAA family ATPase [Streptomyces sp. e14]
 gi|292831684|gb|EFF90033.1| AAA family ATPase [Streptomyces sp. e14]
          Length = 451

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 62/127 (48%), Gaps = 11/127 (8%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL+E  GQ   ++  S L+  +            V+  GPPG GKTTLA VV++  
Sbjct: 27  MRPRTLDEVVGQQHLLKPGSPLRRLVGEGAGGPAGPSSVILWGPPGTGKTTLAYVVSKAT 86

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAMED 131
              F   S  + A   ++ A++              VLF+DEIHR S   ++ L PA+E+
Sbjct: 87  NKRFVELSA-ITAGVKEVRAVIDGARRATGGYGQETVLFLDEIHRFSKAQQDSLLPAVEN 145

Query: 132 FQLDLMV 138
             + L+ 
Sbjct: 146 RWVTLIA 152


>gi|320011904|gb|ADW06754.1| AAA ATPase central domain protein [Streptomyces flavogriseus ATCC
           33331]
          Length = 457

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 62/127 (48%), Gaps = 11/127 (8%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL+E  GQ   ++  S L+  +            V+  GPPG GKTTLA VV++  
Sbjct: 27  MRPRTLDEVVGQQHLLKPGSPLRRLVGEGGGGPAGPSSVILWGPPGTGKTTLAYVVSKAT 86

Query: 79  GVNFRSTSGPVIAKAGDLAALLT-------NLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
              F   S  + A   ++ A++              VLF+DEIHR S   ++ L PA+E+
Sbjct: 87  NKRFVELSA-ITAGVKEVRAVIEGARRATGGFGKETVLFLDEIHRFSKAQQDSLLPAVEN 145

Query: 132 FQLDLMV 138
             + L+ 
Sbjct: 146 RWVTLIA 152


>gi|83590492|ref|YP_430501.1| recombination factor protein RarA [Moorella thermoacetica ATCC
           39073]
 gi|83573406|gb|ABC19958.1| Recombination protein MgsA [Moorella thermoacetica ATCC 39073]
          Length = 441

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 66/117 (56%), Gaps = 10/117 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRTL+EF GQ +      +   A ++  ++L  ++  GPPG GKTTLA+++A     +
Sbjct: 22  MRPRTLDEFVGQEKIIGPGTLLRRAIES--DSLTSIILWGPPGSGKTTLARIIATMTRAH 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLSIIVEEILYPAMED 131
           F + +  V+    D+  ++    +R+       V+F+DEIHR +  +++ L P +E+
Sbjct: 80  FEALNA-VLDGINDIRRVIAAAREREKYYQQKTVIFVDEIHRWAKNIQDALLPCVEE 135


>gi|220932040|ref|YP_002508948.1| AAA ATPase central domain protein [Halothermothrix orenii H 168]
 gi|219993350|gb|ACL69953.1| AAA ATPase central domain protein [Halothermothrix orenii H 168]
          Length = 450

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 73/141 (51%), Gaps = 11/141 (7%)

Query: 6   GLLSRNVSQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
            L  +N    D +  L   +RP  L+EF GQ +     K    A +A  + +  ++  GP
Sbjct: 5   NLFEQNSESNDKNRPLAYRMRPGNLDEFYGQEDVIGPGKPLRRAIEA--DRVQSLILYGP 62

Query: 63  PGLGKTTLAQVVARE-----LGVNFRSTSGPVIAKAGDLAALLTNLED-RDVLFIDEIHR 116
           PG GKT+LAQV+AR+     + +N  ++    I +  D A+   +L   + +LFIDEIHR
Sbjct: 63  PGCGKTSLAQVIARKTEGKFIRINAVTSGVSKIREVIDKASKNRSLHGIKTILFIDEIHR 122

Query: 117 LSIIVEEILYPAMEDFQLDLM 137
            +   ++ L PA+E   + L+
Sbjct: 123 FNKSQQDALLPAVESGTITLI 143


>gi|86135798|ref|ZP_01054377.1| ATPase, AAA family protein [Roseobacter sp. MED193]
 gi|85826672|gb|EAQ46868.1| ATPase, AAA family protein [Roseobacter sp. MED193]
          Length = 439

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 104/227 (45%), Gaps = 24/227 (10%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPR+L E  GQ +               + +L  ++F GPPG+GKTT+A+++A+E  ++
Sbjct: 27  LRPRSLSEVIGQAQVLGEEAPL--GVMLSSGSLSSLIFWGPPGVGKTTIARLLAQETDLH 84

Query: 82  FRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           F   S      P + K  + A +        +LF+DEIHR +   ++   P MED  + L
Sbjct: 85  FVQISAIFTGVPDLRKVFEAAKIRRQNGQGTLLFVDEIHRFNKAQQDGFLPYMEDGTI-L 143

Query: 137 MVG---EGPS--------ARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           +VG   E PS        +RS  + L R +L+     + LLT   +   G  + L+  E 
Sbjct: 144 LVGATTENPSFELNAAVLSRSQVLVLERLSLV----DLELLTQRAERELGKALPLSG-EA 198

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
            D    +  G   T L + ++ A        G   +A RL+RR   +
Sbjct: 199 RDALHEMADGDGRTLLNLIEQVAAWRVATPLGREALATRLMRRAAKY 245


>gi|254383601|ref|ZP_04998951.1| ATP/GTP binding protein [Streptomyces sp. Mg1]
 gi|194342496|gb|EDX23462.1| ATP/GTP binding protein [Streptomyces sp. Mg1]
          Length = 451

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 64/127 (50%), Gaps = 11/127 (8%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL+E  GQ   ++  S L+  +            V+  GPPG+GKTTLA VV++  
Sbjct: 27  MRPRTLDEVVGQQHLLKPGSPLRRLVGEGAGGPAGASSVILWGPPGIGKTTLAYVVSQAT 86

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAMED 131
              F   S  + A   ++ A++   +          VLF+DEIHR S   ++ L PA+E+
Sbjct: 87  QKRFVELSA-ITAGVKEVRAVIEGAKRAAGGYGKETVLFLDEIHRFSKAQQDSLLPAVEN 145

Query: 132 FQLDLMV 138
             + L+ 
Sbjct: 146 RWVTLIA 152


>gi|119356781|ref|YP_911425.1| recombination factor protein RarA [Chlorobium phaeobacteroides DSM
           266]
 gi|119354130|gb|ABL65001.1| Recombination protein MgsA [Chlorobium phaeobacteroides DSM 266]
          Length = 446

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 82/161 (50%), Gaps = 21/161 (13%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL++  GQ   V   + L+ F+ + +        ++F GPPG GKTTLA + A  L
Sbjct: 31  MRPRTLDDIMGQDHLVGRDAPLRRFLASGQ-----FPSMIFWGPPGSGKTTLAGICASSL 85

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDF 132
              F   S  + +   ++   L N E       R +LFIDEIHR +   ++ L  A+E+ 
Sbjct: 86  QFGFEKLSA-IDSGVKEVRKALENAEKARRRGVRTMLFIDEIHRFNKAQQDTLLHAIEE- 143

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
            L ++VG      S ++N +    + +  +V +L NPL DR
Sbjct: 144 GLVVLVGATTENPSFEVNAA----LLSRAQVYIL-NPLGDR 179


>gi|299768300|ref|YP_003730326.1| recombination factor protein RarA [Acinetobacter sp. DR1]
 gi|298698388|gb|ADI88953.1| recombination factor protein RarA [Acinetobacter sp. DR1]
          Length = 421

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 63/195 (32%), Positives = 96/195 (49%), Gaps = 36/195 (18%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPR L E  GQ   +   + L+  I+        L  ++F GPPG+GKTT+A ++A+ +
Sbjct: 12  LRPRDLSEIIGQDHLLGEHAPLRQMIDQGH-----LPSIIFWGPPGVGKTTIALLLAQAI 66

Query: 79  GVNFRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
              F S S           VIA++GD   LLT      V+FIDEIHR +   ++ L  A+
Sbjct: 67  DRPFVSLSALNTGVKELREVIAESGD---LLT-----PVVFIDEIHRFNKSQQDALLGAV 118

Query: 130 EDFQLDLM--VGEGPSARSVKINLSR---FTLIAATTRV--GLLTNPLQ-DRFGIPIRLN 181
           E  ++ L+    E PS       LSR   +TL +  +     LL N LQ D+F   ++  
Sbjct: 119 EKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDSEAIQTLLNNALQADKF---LKER 175

Query: 182 FYEIEDLKTIVQRGA 196
           +  +E+   ++Q  A
Sbjct: 176 YIHVEEYDALIQFAA 190


>gi|260553887|ref|ZP_05826155.1| recombination factor protein RarA [Acinetobacter sp. RUH2624]
 gi|260405007|gb|EEW98509.1| recombination factor protein RarA [Acinetobacter sp. RUH2624]
          Length = 421

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 64/195 (32%), Positives = 96/195 (49%), Gaps = 36/195 (18%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPR L E  GQ   +   + L+  I+        L  ++F GPPG+GKTT+A ++A+ +
Sbjct: 12  LRPRDLSEIIGQDHLLGEHAPLRQMIDQGH-----LPSIIFWGPPGVGKTTIALLLAQAI 66

Query: 79  GVNFRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
              F S S           VIA++GD   LLT      V+FIDEIHR +   ++ L  A+
Sbjct: 67  DRPFVSLSALNTGVKELREVIAESGD---LLT-----PVVFIDEIHRFNKSQQDALLGAV 118

Query: 130 EDFQLDLM--VGEGPSARSVKINLSR---FTLIAATTRV--GLLTNPLQ-DRFGIPIRLN 181
           E  ++ L+    E PS       LSR   +TL +  +     LL N LQ D+F   ++  
Sbjct: 119 EKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDSEAIQTLLNNALQNDKF---LKER 175

Query: 182 FYEIEDLKTIVQRGA 196
           +  IE+   ++Q  A
Sbjct: 176 YIHIEEYDALLQFAA 190


>gi|161507635|ref|YP_001577589.1| recombination factor protein RarA [Lactobacillus helveticus DPC
           4571]
 gi|160348624|gb|ABX27298.1| putative chromosome segregation helicase [Lactobacillus helveticus
           DPC 4571]
          Length = 441

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 107/235 (45%), Gaps = 41/235 (17%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIE-AAKARAEALDHVLF 59
           M  E L S     E+  ++  +RP+ L++F GQ     + K+  +   K R  +L   + 
Sbjct: 1   MKEESLFSLANQNENTPLADRVRPQNLDDFVGQENLIGHGKILRDLIEKDRVPSL---IL 57

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDE 113
            GPPG GKTTLA+++A+    +F + S  V +   D+  ++   E      +R+++FIDE
Sbjct: 58  WGPPGTGKTTLAEIIAKRTKAHFITFSA-VTSSIKDIRKIMEEAEQNRQFGERNIVFIDE 116

Query: 114 IHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL--LTNPLQ 171
           IHR +   ++   P +E                        TLI ATT      + + L 
Sbjct: 117 IHRFNKAQQDAFLPFVEQ--------------------GSITLIGATTENPYFEVNSALL 156

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLT------GLAVTDEAACEIAMRSRGTPR 220
            R  + + L+  +++D+  +++R  K         + V+DEA  +IA+   G  R
Sbjct: 157 SRAKVFV-LHSLKVDDIVLLLKRALKNPNGFPDLNVKVSDEALKQIAIFGNGDAR 210


>gi|327314193|ref|YP_004329630.1| recombination factor protein RarA [Prevotella denticola F0289]
 gi|326944810|gb|AEA20695.1| recombination factor protein RarA [Prevotella denticola F0289]
          Length = 406

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 76/147 (51%), Gaps = 18/147 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL+++ GQ   V   + L+  I++ +     +   +  GPPG+GKTTLAQ++A  L
Sbjct: 8   MRPRTLDDYIGQQHLVGEGAVLRRMIDSGR-----IASFILWGPPGVGKTTLAQIIAHRL 62

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V +   D+  ++   ++         +LFIDEIHR S   ++ L  A+E 
Sbjct: 63  ETPFYTLSA-VTSGVKDVRDVIERAQNGRFFNSASPILFIDEIHRFSKSQQDSLLGAVEK 121

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156
             + L+    E PS   ++  LSR  L
Sbjct: 122 GTVTLIGATTENPSFEVIRPLLSRCQL 148


>gi|238018960|ref|ZP_04599386.1| hypothetical protein VEIDISOL_00820 [Veillonella dispar ATCC 17748]
 gi|237864444|gb|EEP65734.1| hypothetical protein VEIDISOL_00820 [Veillonella dispar ATCC 17748]
          Length = 433

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 77/146 (52%), Gaps = 14/146 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP TL+   GQ +A      F+ A   + + +  +LF GP G GKTTLA ++A+    +
Sbjct: 20  MRPTTLDHLYGQEKAVGK-GTFLRAMVEK-DTIPSMLFYGPCGTGKTTLAGIIAKVSNSH 77

Query: 82  FRSTSGPVIAKAGDLAALLTN-------LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F + +    A  G+L  ++ +       L+ R +LF+DEIHR +   +++L P +ED  +
Sbjct: 78  FVNLNA-TNAGIGELRNIIEDARKRVRSLQQRTILFLDEIHRFNKSQQDVLLPCVEDGTI 136

Query: 135 DLMVGEGPSARSVKIN---LSRFTLI 157
            +++G        ++N   LSR  LI
Sbjct: 137 -ILIGATTENPFFEVNRPLLSRLRLI 161


>gi|170781157|ref|YP_001709489.1| recombination factor protein RarA [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169155725|emb|CAQ00846.1| putative ATPase [Clavibacter michiganensis subsp. sepedonicus]
          Length = 486

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/133 (34%), Positives = 66/133 (49%), Gaps = 12/133 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAK--ARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +RPR+L+E TGQ    +     +  A   A  +    ++  GPPG GKTTLAQ +A    
Sbjct: 19  MRPRSLDEVTGQRHLLTPGSPLVSLASDVAGEQGSVSIILWGPPGTGKTTLAQAIAHGSS 78

Query: 80  VNFRSTSGPVIAKAGDLAALLTN-LEDRD------VLFIDEIHRLSIIVEEILYPAMEDF 132
             F   S  V A   D+  ++   L DRD      VLF+DEIHR +   ++ L P +E+ 
Sbjct: 79  RRFVELSA-VTAGVRDVRQVMEKALSDRDLFGVSTVLFLDEIHRFTKAQQDALLPGVENG 137

Query: 133 QLDLMVG--EGPS 143
            + L+    E PS
Sbjct: 138 WVILIAATTENPS 150


>gi|149244336|ref|XP_001526711.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146449105|gb|EDK43361.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 839

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 63/122 (51%), Gaps = 22/122 (18%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKAR----AEALDHVLFVGPPGLGKTTLAQVVARE 77
           +RP+TL++F GQ       K+  E A  R    A+ +   L  GPPG GKTT+A+++A+ 
Sbjct: 187 VRPKTLDDFIGQE------KLVGENAPLRNLIQADLIPSFLLWGPPGCGKTTIARIIAKS 240

Query: 78  LGVNFRSTSGP---------VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
               +   SG            A+A +L  L      R +LF+DEIHR +  V+++L P 
Sbjct: 241 TDYRYVELSGADSNAKSLKDAFAQADNLKKLTGQ---RTILFLDEIHRYNKAVQDLLLPV 297

Query: 129 ME 130
           +E
Sbjct: 298 IE 299


>gi|256826951|ref|YP_003150910.1| Recombination protein MgsA [Cryptobacterium curtum DSM 15641]
 gi|256583094|gb|ACU94228.1| Recombination protein MgsA [Cryptobacterium curtum DSM 15641]
          Length = 435

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 110/225 (48%), Gaps = 24/225 (10%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR+L++  GQ EA      ++ AA A A++L  V+  GP G GKT++A ++A      
Sbjct: 23  MRPRSLDDLLGQQEAIGP-GSWLHAAIA-ADSLSSVILYGPAGTGKTSIAHIIAESTKAE 80

Query: 82  FRSTS---GPVIAKAGDLAAL---LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F   S   G V     ++AA    LT+   R +LF+DEIHR +   ++ L  A+ED ++ 
Sbjct: 81  FVEVSAIGGTVSDLRREIAAAEKRLTSHGMRTILFVDEIHRFNRSQQDALLHAVED-RVV 139

Query: 136 LMVGEGPSARSVKIN---LSRFTLIAATTR-----VGLLTNPLQDRFGIPIRLNFYEIED 187
           ++VG        ++N   LSR  ++  T+        ++   L D  G+      Y ++D
Sbjct: 140 VLVGATTENPFFEVNSALLSRSRIVELTSLSDEEIASVVQRALVDERGL---AGAYSLDD 196

Query: 188 --LKTIVQ-RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
             L  I+Q  G        T E AC++A R+  T  I   ++++ 
Sbjct: 197 EALDAIMQVSGGDARSALTTLELACDMA-RAEDTHAITAAMVKKA 240


>gi|256752628|ref|ZP_05493481.1| AAA ATPase central domain protein [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|256748512|gb|EEU61563.1| AAA ATPase central domain protein [Thermoanaerobacter ethanolicus
           CCSD1]
          Length = 443

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 67/261 (25%), Positives = 118/261 (45%), Gaps = 40/261 (15%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+TL+EF GQ       K+  E  +   + +  ++  GPPG+GKTTLA ++A      
Sbjct: 23  MRPKTLDEFVGQEHLLGKGKLLRELIEK--DNITSMILWGPPGVGKTTLAMIIANMTNSK 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F + S  V++   ++  ++   E       R V+FIDEIHR +   ++   P +E   + 
Sbjct: 81  FVTFSA-VLSGIKEIKEIMAKAELDAMYGTRTVVFIDEIHRFNKAQQDAFLPHVEKGNI- 138

Query: 136 LMVGEGPSARSVKIN---LSR---FTLIAATTR--VGLLTNPLQDRFGIPIRLNFYEIED 187
           +++G      S ++N   LSR   F +   T    + LL   L+D+              
Sbjct: 139 ILIGATTENPSFEVNSALLSRSKVFVMKPLTEEDLLVLLKRALRDK-------------- 184

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE--I 245
                +RG  +  + ++ +   +IA+ + G  R+A   L      A+V   + I  +  +
Sbjct: 185 -----ERGLGMYDIEISGDQLKKIALFANGDARVALNTLEIAVMGAKVIEGERIVTDDIL 239

Query: 246 ADAALLR-LAIDKMGFDQLDL 265
           ADA   + L  DK G +  +L
Sbjct: 240 ADAMQKKTLLYDKQGEEHYNL 260


>gi|227543541|ref|ZP_03973590.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri
           CF48-3A]
 gi|300908249|ref|ZP_07125715.1| replication-associated recombination protein A [Lactobacillus
           reuteri SD2112]
 gi|227186468|gb|EEI66539.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri
           CF48-3A]
 gi|300894676|gb|EFK88032.1| replication-associated recombination protein A [Lactobacillus
           reuteri SD2112]
          Length = 434

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 4/130 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRTL+E  GQ       K+     KA+   L  ++  GPPG GKT++A  +A      
Sbjct: 9   MRPRTLDEVVGQQHLVGPGKIISRMVKAKM--LSSMILYGPPGTGKTSIASAIAGSTKYA 66

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR  +     K    + A    +    +L +DEIHRL  + ++ L P +E+ ++ +++G 
Sbjct: 67  FRKLNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKVKQDFLLPHLENGRI-ILIGA 125

Query: 141 GPSARSVKIN 150
                 + IN
Sbjct: 126 TTENPYISIN 135


>gi|34540836|ref|NP_905315.1| recombination factor protein RarA [Porphyromonas gingivalis W83]
 gi|188995064|ref|YP_001929316.1| recombination factor protein RarA [Porphyromonas gingivalis ATCC
           33277]
 gi|34397150|gb|AAQ66214.1| ATPase, AAA family [Porphyromonas gingivalis W83]
 gi|188594744|dbj|BAG33719.1| ATPase AAA family [Porphyromonas gingivalis ATCC 33277]
          Length = 434

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/149 (33%), Positives = 78/149 (52%), Gaps = 25/149 (16%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP+TL ++ GQ   + + + L+  IE  +  +     ++  GPPG+GKTTLA+++A E+
Sbjct: 10  MRPKTLADYVGQQHLIGSGAVLRQMIEQGQTPS-----MILWGPPGVGKTTLAEIIAHEV 64

Query: 79  GVNFRSTSG---------PVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILY 126
              F + S           VIA   D+ +   NL D   R +LFIDEIHR S   ++ L 
Sbjct: 65  DAPFYTLSAVSSGVKEVREVIA---DIESNRGNLFDKGGRAILFIDEIHRFSKSQQDSLL 121

Query: 127 PAMEDFQLDLM--VGEGPSARSVKINLSR 153
            A+E   + L+    E PS   ++  LSR
Sbjct: 122 AAVERGIVTLIGATTENPSFEVIRPLLSR 150


>gi|288801937|ref|ZP_06407378.1| ATPase, AAA family [Prevotella melaninogenica D18]
 gi|288335372|gb|EFC73806.1| ATPase, AAA family [Prevotella melaninogenica D18]
          Length = 418

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 75/147 (51%), Gaps = 18/147 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPRTL+++ GQ   V   + L+  I++ +     +   +  GPPG+GKTTLAQ++A  L
Sbjct: 8   LRPRTLDDYIGQEHLVGEGAVLRRMIDSGR-----IASFILWGPPGVGKTTLAQIIANRL 62

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V +   D+  ++   +          +LFIDEIHR S   ++ L  A+E 
Sbjct: 63  ETPFYTLSA-VTSGVKDVRDVIERAQSGRFFNSVSPILFIDEIHRFSKSQQDSLLGAVEK 121

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156
             + L+    E PS   ++  LSR  L
Sbjct: 122 GTVTLIGATTENPSFEVIRPLLSRCQL 148


>gi|302347025|ref|YP_003815323.1| recombination factor protein RarA [Prevotella melaninogenica ATCC
           25845]
 gi|302150622|gb|ADK96883.1| recombination factor protein RarA [Prevotella melaninogenica ATCC
           25845]
          Length = 405

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 75/147 (51%), Gaps = 18/147 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPRTL+++ GQ   V   + L+  I++ +     +   +  GPPG+GKTTLAQ++A  L
Sbjct: 8   LRPRTLDDYIGQEHLVGEGAVLRRMIDSGR-----IASFILWGPPGVGKTTLAQIIANRL 62

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V +   D+  ++   +          +LFIDEIHR S   ++ L  A+E 
Sbjct: 63  ETPFYTLSA-VTSGVKDVRDVIERAQSGRFFNSASPILFIDEIHRFSKSQQDSLLGAVEK 121

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156
             + L+    E PS   ++  LSR  L
Sbjct: 122 GTVTLIGATTENPSFEVIRPLLSRCQL 148


>gi|332873377|ref|ZP_08441331.1| recombination factor protein RarA [Acinetobacter baumannii 6014059]
 gi|332738440|gb|EGJ69313.1| recombination factor protein RarA [Acinetobacter baumannii 6014059]
          Length = 421

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 64/195 (32%), Positives = 96/195 (49%), Gaps = 36/195 (18%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPR L E  GQ   +   + L+  I+        L  ++F GPPG+GKTT+A ++A+ +
Sbjct: 12  LRPRDLSEIIGQDHLLGEHAPLRQMIDQGH-----LPSIIFWGPPGVGKTTIALLLAQAI 66

Query: 79  GVNFRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
              F S S           VIA++GD   LLT      V+FIDEIHR +   ++ L  A+
Sbjct: 67  DRPFVSLSALNTGVKELREVIAESGD---LLT-----PVVFIDEIHRFNKSQQDALLGAV 118

Query: 130 EDFQLDLM--VGEGPSARSVKINLSR---FTLIAATTRV--GLLTNPLQ-DRFGIPIRLN 181
           E  ++ L+    E PS       LSR   +TL +  +     LL N LQ D+F   ++  
Sbjct: 119 EKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDSEAIQTLLNNALQNDKF---LKER 175

Query: 182 FYEIEDLKTIVQRGA 196
           +  IE+   ++Q  A
Sbjct: 176 YIHIEEYDALLQFAA 190


>gi|162286716|ref|YP_001086418.2| recombination factor protein RarA [Acinetobacter baumannii ATCC
           17978]
 gi|193078744|gb|ABO13816.2| putative ATPase [Acinetobacter baumannii ATCC 17978]
 gi|323519866|gb|ADX94247.1| recombination factor protein RarA [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 421

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 64/195 (32%), Positives = 96/195 (49%), Gaps = 36/195 (18%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPR L E  GQ   +   + L+  I+        L  ++F GPPG+GKTT+A ++A+ +
Sbjct: 12  LRPRDLSEIIGQDHLLGEHAPLRQMIDQGH-----LPSIIFWGPPGVGKTTIALLLAQAI 66

Query: 79  GVNFRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
              F S S           VIA++GD   LLT      V+FIDEIHR +   ++ L  A+
Sbjct: 67  DRPFVSLSALNTGVKELREVIAESGD---LLT-----PVVFIDEIHRFNKSQQDALLGAV 118

Query: 130 EDFQLDLM--VGEGPSARSVKINLSR---FTLIAATTRV--GLLTNPLQ-DRFGIPIRLN 181
           E  ++ L+    E PS       LSR   +TL +  +     LL N LQ D+F   ++  
Sbjct: 119 EKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDSEAIQTLLNNALQNDKF---LKER 175

Query: 182 FYEIEDLKTIVQRGA 196
           +  IE+   ++Q  A
Sbjct: 176 YIHIEEYDALLQFAA 190


>gi|13358001|ref|NP_078275.1| holliday junction DNA helicase (fragment) [Ureaplasma parvum
           serovar 3 str. ATCC 700970]
 gi|170762089|ref|YP_001752524.1| holliday junction ATP-dependent DNA helicase RuvB [Ureaplasma
           parvum serovar 3 str. ATCC 27815]
 gi|11356863|pir||E82891 holliday junction DNA helicase, truncated homolog UU438 [imported]
           - Ureaplasma urealyticum
 gi|6899429|gb|AAF30850.1|AE002140_9 holliday junction DNA helicase (fragment) [Ureaplasma parvum
           serovar 3 str. ATCC 700970]
 gi|168827666|gb|ACA32928.1| holliday junction ATP-dependent DNA helicase RuvB [Ureaplasma
           parvum serovar 3 str. ATCC 27815]
          Length = 109

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/109 (35%), Positives = 59/109 (54%), Gaps = 12/109 (11%)

Query: 211 IAMRSRGTPRIAGRLLRRVRDFA--EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYL 268
           IA  ++G PR+A RLL+RV DF        K+I ++I         I + G D+ D+ YL
Sbjct: 2   IANNAKGIPRLANRLLKRVVDFKINGFNDIKSIFKKIQ--------IYEFGLDEQDINYL 53

Query: 269 TMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317
            ++ R      +G+++I+  L   +  IE  IEPY+IQ  FI +  RGR
Sbjct: 54  NVLYRQ--DNEIGLKSIAQILRLDQYTIETKIEPYLIQHHFINKNLRGR 100


>gi|311894847|dbj|BAJ27255.1| putative ATPase [Kitasatospora setae KM-6054]
          Length = 449

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/126 (34%), Positives = 66/126 (52%), Gaps = 10/126 (7%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL+E  GQ   ++  S L+  +  +K  A A   V+  GPPG GKTTLA V+++ +
Sbjct: 28  MRPRTLDEVAGQRQLLKDGSPLRRLVAGSKGPA-ATSSVILWGPPGTGKTTLAHVISQAV 86

Query: 79  GVNFRSTSG-----PVIAKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMEDF 132
              F   S        +    D A     +  R+ VLF+DEIHR S   ++ L PA+E+ 
Sbjct: 87  EGRFVELSAITHGVKEVRAVIDGARRAVGMSGRETVLFLDEIHRFSKAQQDSLLPAVENR 146

Query: 133 QLDLMV 138
            + L+ 
Sbjct: 147 WVTLIA 152


>gi|206900704|ref|YP_002250508.1| ATPase, AAA family [Dictyoglomus thermophilum H-6-12]
 gi|206739807|gb|ACI18865.1| ATPase, AAA family [Dictyoglomus thermophilum H-6-12]
          Length = 431

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 99/229 (43%), Gaps = 24/229 (10%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MDR+  L +     +     +RPRTLEEF G  E       F+  A  +   L  ++  G
Sbjct: 1   MDRQESLFKEDHNYEPLSFRMRPRTLEEFLG-AEDIIGENSFLRKAINKG-YLPSLIVYG 58

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALL---TNLE---DRDVLFIDEIH 115
           PPG GKTTL+ ++A+ +   F   +  ++       AL     NLE    R VLF+DEIH
Sbjct: 59  PPGSGKTTLSILLAKAINAEFIELNAAIVGVQELKEALQRARRNLELYGKRTVLFLDEIH 118

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
             + + +++L P +E   + L+    E P        LSR  LI           PL + 
Sbjct: 119 HFNRLQQDVLLPFVEKGTIILIGATTENPFFALNTTLLSRCRLIE--------LKPLSNE 170

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
               I     E ED      RG     L +TD+A  EI   + G  RIA
Sbjct: 171 NIEKILRRALEDED------RGLGKKKLQITDDAIEEIVRFANGDARIA 213


>gi|254432154|ref|ZP_05045857.1| ATPase [Cyanobium sp. PCC 7001]
 gi|197626607|gb|EDY39166.1| ATPase [Cyanobium sp. PCC 7001]
          Length = 753

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 97/214 (45%), Gaps = 40/214 (18%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPRTL++F GQ       ++   A  A  + + +++  GPPG GKTTLA+++A     +
Sbjct: 23  LRPRTLDDFVGQEGILGPGRLLRRAIAA--DRVGNLILHGPPGTGKTTLARIIAGTTRAH 80

Query: 82  FRSTSGPVIAKAGDLAALLTN----LED---RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F S +  V+A   DL   +      LE    R +LFIDE+HR +   ++ L P +E+  +
Sbjct: 81  FTSLNA-VLAGVKDLRTAVDEARGRLEQHGLRTLLFIDEVHRFNAAQQDALLPWVENGTV 139

Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            L+    E P     K  +SR  L                      RL   E   L  ++
Sbjct: 140 TLIGATTENPFFEVNKALVSRSRL---------------------FRLQPLEPIHLHQLL 178

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
           QR       A++DEAA    +R + TP  A  L+
Sbjct: 179 QR-------ALSDEAAGYGRIRVQLTPEAADHLV 205


>gi|169634881|ref|YP_001708617.1| recombination factor protein RarA [Acinetobacter baumannii SDF]
 gi|239502781|ref|ZP_04662091.1| recombination factor protein RarA [Acinetobacter baumannii AB900]
 gi|260557813|ref|ZP_05830026.1| recombination factor protein RarA [Acinetobacter baumannii ATCC
           19606]
 gi|169153673|emb|CAP02871.1| putative ATPase [Acinetobacter baumannii]
 gi|260408604|gb|EEX01909.1| recombination factor protein RarA [Acinetobacter baumannii ATCC
           19606]
          Length = 421

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 64/195 (32%), Positives = 96/195 (49%), Gaps = 36/195 (18%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPR L E  GQ   +   + L+  I+        L  ++F GPPG+GKTT+A ++A+ +
Sbjct: 12  LRPRDLSEIIGQDHLLGEHAPLRQMIDQGH-----LPSIIFWGPPGVGKTTIALLLAQAI 66

Query: 79  GVNFRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
              F S S           VIA++GD   LLT      V+FIDEIHR +   ++ L  A+
Sbjct: 67  DRPFVSLSALNTGVKELREVIAESGD---LLT-----PVVFIDEIHRFNKSQQDALLGAV 118

Query: 130 EDFQLDLM--VGEGPSARSVKINLSR---FTLIAATTRV--GLLTNPLQ-DRFGIPIRLN 181
           E  ++ L+    E PS       LSR   +TL +  +     LL N LQ D+F   ++  
Sbjct: 119 EKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDSEAIQTLLNNALQNDKF---LKER 175

Query: 182 FYEIEDLKTIVQRGA 196
           +  IE+   ++Q  A
Sbjct: 176 YIHIEEYDALLQFAA 190


>gi|269926092|ref|YP_003322715.1| AAA ATPase central domain protein [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269789752|gb|ACZ41893.1| AAA ATPase central domain protein [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 423

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 74/252 (29%), Positives = 113/252 (44%), Gaps = 25/252 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR ++E  GQ       K  + AA  R +++  ++  GPPG GKT+LA  +A     N
Sbjct: 24  MRPRNIDEIVGQEHLLGPGKP-LRAAIER-DSIPSIILWGPPGTGKTSLAMAIAETTSSN 81

Query: 82  FRSTSG-----PVIAKAGDLAALLT-NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F   S      P + +  + A  L  NL  R ++F+DEIHR +   ++ + P +E+  + 
Sbjct: 82  FVHLSAVSVGVPELRRVIESAIRLKRNLRKRTIVFLDEIHRFNKAQQDAVLPHVENGSIT 141

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE-IEDLKTIVQR 194
           L +G      S ++N    + + +  RV +L NPL +     I+L     IED     +R
Sbjct: 142 L-IGATTENPSFEVN----SALLSRCRVYVL-NPLSEEH---IKLILKRAIED----KER 188

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT-ITREIADAALLRL 253
           G     L V D A   +A  + G  RIA   L      A   H    + RE+    +  L
Sbjct: 189 GLGSYALQVDDVALEFLADLANGDARIALTALEMAARVANDGHIDVDLIREVVQRKV--L 246

Query: 254 AIDKMGFDQLDL 265
             DK G    DL
Sbjct: 247 LYDKSGDQHYDL 258


>gi|51244885|ref|YP_064769.1| recombination factor protein RarA [Desulfotalea psychrophila LSv54]
 gi|50875922|emb|CAG35762.1| probable uncharacterized ATPase related to the helicase subunit of
           the Holliday junction resolvase [Desulfotalea
           psychrophila LSv54]
          Length = 440

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 73/262 (27%), Positives = 110/262 (41%), Gaps = 51/262 (19%)

Query: 23  RPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFV--GPPGLGKTTLAQVVARE 77
           RP+ LEE  GQ   +E  S L+  IE         D+  F+  GPPG GKTT+A+ +   
Sbjct: 24  RPQKLEEIHGQNKLLEKGSILRSMIEQD-------DYSSFILWGPPGTGKTTIARFIETH 76

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAME 130
               F S S  V+ K  ++ AL+            + ++F+DEIHR +   ++   P +E
Sbjct: 77  TKHIFASLSA-VLTKIAEVKALMEQARFRLQAEGQKTLVFVDEIHRFNKSQQDAFLPYVE 135

Query: 131 DFQLDLM--VGEGPSARSVKINLSR---FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
              + L+    E PS   +   LSR   FTL            PL              I
Sbjct: 136 SGAIVLLGATTENPSFEVISALLSRCHVFTL-----------QPL-------------SI 171

Query: 186 EDLKTIVQRGAKLT--GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           ED+K+I+ R  K     + ++D+A   +A +S G  R A   L  V        +  I +
Sbjct: 172 EDIKSIMTRALKEIPREIHISDQALTMLAEKSGGDGRKALNHLETVARSGATGDSIDIEK 231

Query: 244 EIADAALLRLAIDKMGFDQLDL 265
            I   +   L  DK G +  +L
Sbjct: 232 AIQAISQRSLFYDKRGEEHFNL 253


>gi|254457233|ref|ZP_05070661.1| AAA ATPase [Campylobacterales bacterium GD 1]
 gi|207086025|gb|EDZ63309.1| AAA ATPase [Campylobacterales bacterium GD 1]
          Length = 395

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 61/117 (52%), Gaps = 12/117 (10%)

Query: 21  LLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           LLRP + ++  GQ    +    L+V  E        L H  F GP G GKT++A+++A+ 
Sbjct: 6   LLRPNSFDDLVGQEHLSAQNAPLRVLCEKY-----TLGHSFFYGPAGCGKTSIARIIAKT 60

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMED 131
           + + F   +   I K   L  +    ++   + +LFIDE+HRL+   +E+L P ME+
Sbjct: 61  MDLPFYEFNATSI-KIEQLRKIFEQYKNALQKPLLFIDEVHRLAKNQQEVLLPVMEN 116


>gi|332884949|gb|EGK05204.1| hypothetical protein HMPREF9456_03117 [Dysgonomonas mossii DSM
           22836]
          Length = 422

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/144 (34%), Positives = 73/144 (50%), Gaps = 18/144 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPR LEE+ GQ   V   + L+  IE+ +  +      L  GPPG+GKTTLAQ++A  L
Sbjct: 9   LRPRNLEEYIGQKHLVGEGAILRKMIESGRVPS-----FLLWGPPGVGKTTLAQIIANTL 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLSIIVEEILYPAMED 131
              F + S  + +   D+  ++   +          +LFIDEIHR S   ++ L  A+E 
Sbjct: 64  DTPFYTLSA-INSGVKDVREVIELAKKNQFFNTKSPILFIDEIHRFSKSQQDSLLGAVET 122

Query: 132 FQLDLM--VGEGPSARSVKINLSR 153
             + L+    E PS   ++  LSR
Sbjct: 123 GVITLIGATTENPSFEVIRPLLSR 146


>gi|184155391|ref|YP_001843731.1| recombination factor protein RarA [Lactobacillus fermentum IFO
           3956]
 gi|183226735|dbj|BAG27251.1| helicase [Lactobacillus fermentum IFO 3956]
          Length = 448

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 69/134 (51%), Gaps = 8/134 (5%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR L EF GQ +     KV  E  +   + L  ++  GPPG+GKTTLA+++A++    
Sbjct: 22  VRPRELAEFFGQDQLVGTGKVLSELIEQ--DRLPSLILWGPPGVGKTTLAEIIAQKTKAK 79

Query: 82  FRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           F + S        I +  + A       +R V+FIDEIHR +   ++   P +E  ++ +
Sbjct: 80  FITFSAVNSSIKDIKQVMEAATANHQFGERTVVFIDEIHRFNKAQQDAFLPYVERGEI-I 138

Query: 137 MVGEGPSARSVKIN 150
           ++G      S ++N
Sbjct: 139 LIGATTENPSFELN 152


>gi|328954253|ref|YP_004371587.1| AAA ATPase central domain protein [Desulfobacca acetoxidans DSM
           11109]
 gi|328454577|gb|AEB10406.1| AAA ATPase central domain protein [Desulfobacca acetoxidans DSM
           11109]
          Length = 433

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 70/140 (50%), Gaps = 10/140 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP +LEEF GQ +     ++   A +A       ++F GPPG GKTTLAQ++A     +
Sbjct: 14  MRPSSLEEFVGQEQIIGPGRLLRRAIEAD-RLFSSLIFWGPPGCGKTTLAQIIAGVTRSH 72

Query: 82  FRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F S S  V++   D+  ++   E       R ++ IDEIHR +   ++ L P +E   L 
Sbjct: 73  FVSLSA-VLSGVKDIREVVAQAEKKRLQQQRTIVLIDEIHRFNKAQQDALLPHVEAGTLI 131

Query: 136 LM--VGEGPSARSVKINLSR 153
           L+    E P    +   LSR
Sbjct: 132 LIGATTENPYFEVIAPLLSR 151


>gi|148543723|ref|YP_001271093.1| recombination factor protein RarA [Lactobacillus reuteri DSM 20016]
 gi|184153130|ref|YP_001841471.1| recombination factor protein RarA [Lactobacillus reuteri JCM 1112]
 gi|227363297|ref|ZP_03847427.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri
           MM2-3]
 gi|325682095|ref|ZP_08161613.1| replication-associated recombination protein A [Lactobacillus
           reuteri MM4-1A]
 gi|148530757|gb|ABQ82756.1| Recombination protein MgsA [Lactobacillus reuteri DSM 20016]
 gi|183224474|dbj|BAG24991.1| conserved hypothetical protein [Lactobacillus reuteri JCM 1112]
 gi|227071660|gb|EEI09953.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri
           MM2-3]
 gi|324978739|gb|EGC15688.1| replication-associated recombination protein A [Lactobacillus
           reuteri MM4-1A]
          Length = 434

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 4/130 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRTL+E  GQ       K+     KA+   L  ++  GPPG GKT++A  +A      
Sbjct: 9   MRPRTLDEVVGQQHLVGPGKIISRMVKAKM--LSSMILYGPPGTGKTSIASAIAGSTKYA 66

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR  +     K    + A    +    +L +DEIHRL  + ++ L P +E+ ++ +++G 
Sbjct: 67  FRKLNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKVKQDFLLPHLENGRI-ILIGA 125

Query: 141 GPSARSVKIN 150
                 + IN
Sbjct: 126 TTENPYISIN 135


>gi|228993137|ref|ZP_04153059.1| hypothetical protein bpmyx0001_38730 [Bacillus pseudomycoides DSM
           12442]
 gi|228766596|gb|EEM15237.1| hypothetical protein bpmyx0001_38730 [Bacillus pseudomycoides DSM
           12442]
          Length = 420

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 129/330 (39%), Gaps = 65/330 (19%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  ++E  GQ       K+     +A       ++  GPPG GKT++A  +A   G  
Sbjct: 1   MRPTNIKEIIGQEHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAIAGSTGTP 58

Query: 82  FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
           FR  +  V     D+  ++    +    VL +DE+HRL    ++ L P +E   L     
Sbjct: 59  FRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLL----- 112

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEIE---------DLK 189
                          TLI ATT     +NP       I  R   +E+           LK
Sbjct: 113 ---------------TLIGATT-----SNPFHAINSAIRSRCQIFELHALTENDILIGLK 152

Query: 190 TIVQRGAKLTG---LAVTDEAACEIAMRSRGTPRIAGRLLRR--VRDFAEVAHAKTITRE 244
             ++   K  G   + VTDEA C  A  S G  R A   L    +  F     +  IT E
Sbjct: 153 RALEDKEKGLGEYHVTVTDEAMCHFANASGGDMRSAYNALELAVLSSFTTDDQSTEITLE 212

Query: 245 IADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           IA+  L + +   DK G    D+  L+   ++  G  V              A+  L   
Sbjct: 213 IAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDVNA------------ALHYLAR- 257

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
            +I+ G +Q    GR L+ +A++ +G+  P
Sbjct: 258 -LIEAGDLQSI--GRRLLIMAYEDIGLASP 284


>gi|261492454|ref|ZP_05989010.1| putative recombination ATPase [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261311913|gb|EEY13060.1| putative recombination ATPase [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 445

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 60/118 (50%), Gaps = 13/118 (11%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPR L E+ GQ         L+  IEA  + +     ++F GPPG GKTTLA+++A  L
Sbjct: 19  MRPRNLAEYVGQSHLIGEGKPLRRAIEAGHSHS-----MIFWGPPGTGKTTLAEIIAHHL 73

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
                     TSG   I +A + A L      R +LF+DE+HR +   ++   P +ED
Sbjct: 74  DAEVERISAVTSGVKEIREAIEQAKLNRQAGRRTLLFVDEVHRFNKSQQDAFLPHIED 131


>gi|37521678|ref|NP_925055.1| recombination factor protein RarA/unknown domain fusion protein
           [Gloeobacter violaceus PCC 7421]
 gi|35212676|dbj|BAC90050.1| glr2109 [Gloeobacter violaceus PCC 7421]
          Length = 747

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 64/117 (54%), Gaps = 10/117 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR+L++F GQ       ++   A +A  + L  ++F GPPG GKTTLA+++A     +
Sbjct: 35  MRPRSLDQFVGQGHIVGPGRLLRRAIQA--DQLSSLIFYGPPGTGKTTLARIIAGTTRAH 92

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131
           F + +  V+A   D+   +   +        R +LF+DE+HR +   ++ L P +E+
Sbjct: 93  FIAINA-VLAGVKDIREAIDEAKSRRGQFGRRTILFVDEVHRFNKSQQDALLPWIEN 148


>gi|260662096|ref|ZP_05862992.1| helicase [Lactobacillus fermentum 28-3-CHN]
 gi|260553479|gb|EEX26371.1| helicase [Lactobacillus fermentum 28-3-CHN]
          Length = 448

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 69/134 (51%), Gaps = 8/134 (5%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR L EF GQ +     KV  E  +   + L  ++  GPPG+GKTTLA+++A++    
Sbjct: 22  VRPRELAEFFGQDQLVGTGKVLSELIEQ--DRLPSLILWGPPGVGKTTLAEIIAQKTKAK 79

Query: 82  FRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           F + S        I +  + A       +R V+FIDEIHR +   ++   P +E  ++ +
Sbjct: 80  FITFSAVNSSIKDIKQVMEAATANHQFGERTVVFIDEIHRFNKAQQDAFLPYVERGEI-I 138

Query: 137 MVGEGPSARSVKIN 150
           ++G      S ++N
Sbjct: 139 LIGATTENPSFELN 152


>gi|259503655|ref|ZP_05746557.1| AAA family ATPase [Lactobacillus antri DSM 16041]
 gi|259168374|gb|EEW52869.1| AAA family ATPase [Lactobacillus antri DSM 16041]
          Length = 433

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 62/130 (47%), Gaps = 4/130 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRTLEE  GQ       K+     KAR   L  ++  GPPG GKT++A  +A      
Sbjct: 8   MRPRTLEEVVGQQHLVGPGKIISRMVKARM--LSSMILYGPPGTGKTSIASAIAGSTRYA 65

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR  +    +K    + A    +    +L +DEIHRL    ++ L P +E  ++ +++G 
Sbjct: 66  FRKLNAATDSKKDLQIVAEEAKMSGTVILLLDEIHRLDKAKQDFLLPHLESGRI-VLIGA 124

Query: 141 GPSARSVKIN 150
                 + IN
Sbjct: 125 TTENPYISIN 134


>gi|308180384|ref|YP_003924512.1| crossover junction endodeoxyribonuclease [Lactobacillus plantarum
           subsp. plantarum ST-III]
 gi|308045875|gb|ADN98418.1| crossover junction endodeoxyribonuclease [Lactobacillus plantarum
           subsp. plantarum ST-III]
          Length = 420

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 116/277 (41%), Gaps = 50/277 (18%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALD-HV----LFVGPPGLGKTTLAQVVAR 76
           +RP++LE+  GQ +        ++A +   + +D HV    +  GPPG GKT+LAQ++A 
Sbjct: 11  MRPQSLEQMVGQQD-------LLKAGQPLRQIIDQHVNIPLILWGPPGTGKTSLAQIIAS 63

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           +    F + +     KA    A+    E   VL IDEIHR++  +++ L P +E+  + +
Sbjct: 64  QDDYPFVAFTASTENKAQLTKAIAQYPEQSFVLLIDEIHRMTKTLQDFLLPYLENGHV-M 122

Query: 137 MVG---EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE-DLKTIV 192
           ++G   E P    V    SR  +            PL D           +IE  L+  V
Sbjct: 123 LIGSTTENPIMSIVPAIRSRCQIFE--------FQPLSDT----------DIEIALRRAV 164

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR-------------VRDFAEVAHAK 239
                LT   V  +A   IA+ + G  RIA  +L               V+ FA+  H  
Sbjct: 165 TDIYNLTDDQVDAKALNLIAISAEGDLRIALNILETLHAIDQKQITVAAVQHFAQQQHFS 224

Query: 240 TITREIADAALLRLAIDKMGFDQLD--LRYLTMIARN 274
              +       L    D M     D  L YLT++ +N
Sbjct: 225 YDRKATKHYDYLSAYSDSMAGSDTDAALYYLTILLKN 261


>gi|304439985|ref|ZP_07399878.1| AAA family ATPase [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371477|gb|EFM25090.1| AAA family ATPase [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 434

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 59/116 (50%), Gaps = 10/116 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L+EF GQ       K      K+    +  ++F GPPG+GKTTLA++ A   G  
Sbjct: 22  MRPKNLDEFVGQSHIVGEGKYLNRLLKSGR--VFSMIFYGPPGVGKTTLAEIFAGLSGYK 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAME 130
           F   S  + +   +L  LL   ED       + +LFIDEIHR +   ++ L P +E
Sbjct: 80  FVRISA-ITSGVKELRELLKTAEDDLKFNNVKTILFIDEIHRFNKSQQDALLPFVE 134


>gi|227515139|ref|ZP_03945188.1| recombination ATPase [Lactobacillus fermentum ATCC 14931]
 gi|227086471|gb|EEI21783.1| recombination ATPase [Lactobacillus fermentum ATCC 14931]
          Length = 448

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 69/134 (51%), Gaps = 8/134 (5%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR L EF GQ +     KV  E  +   + L  ++  GPPG+GKTTLA+++A++    
Sbjct: 22  VRPRELAEFFGQDQLVGTGKVLSELIEQ--DRLPSLILWGPPGVGKTTLAEIIAQKTKAK 79

Query: 82  FRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           F + S        I +  + A       +R V+FIDEIHR +   ++   P +E  ++ +
Sbjct: 80  FITFSAVNSSIKDIKQVMEAATANHQFGERTVVFIDEIHRFNKAQQDAFLPYVERGEI-I 138

Query: 137 MVGEGPSARSVKIN 150
           ++G      S ++N
Sbjct: 139 LIGATTENPSFELN 152


>gi|299783213|gb|ADJ41211.1| Recombination ATPase [Lactobacillus fermentum CECT 5716]
          Length = 448

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 69/134 (51%), Gaps = 8/134 (5%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR L EF GQ +     KV  E  +   + L  ++  GPPG+GKTTLA+++A++    
Sbjct: 22  VRPRELAEFFGQDQLVGTGKVLSELIEQ--DRLPSLILWGPPGVGKTTLAEIIAQKTKAK 79

Query: 82  FRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           F + S        I +  + A       +R V+FIDEIHR +   ++   P +E  ++ +
Sbjct: 80  FITFSAVNSSIKDIKQVMEAATANHQFGERTVVFIDEIHRFNKAQQDAFLPYVERGEI-I 138

Query: 137 MVGEGPSARSVKIN 150
           ++G      S ++N
Sbjct: 139 LIGATTENPSFELN 152


>gi|28378233|ref|NP_785125.1| recombination factor protein RarA [Lactobacillus plantarum WCFS1]
 gi|28271068|emb|CAD63973.1| chromosome segregation helicase (putative) [Lactobacillus plantarum
           WCFS1]
          Length = 420

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 116/277 (41%), Gaps = 50/277 (18%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALD-HV----LFVGPPGLGKTTLAQVVAR 76
           +RP++LE+  GQ +        ++A +   + +D HV    +  GPPG GKT+LAQ++A 
Sbjct: 11  MRPQSLEQMVGQQD-------LLKAGQPLRQIIDQHVNIPLILWGPPGTGKTSLAQIIAS 63

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           +    F + +     KA    A+    E   VL IDEIHR++  +++ L P +E+  + +
Sbjct: 64  QDDYPFVAFNASTENKAQLTKAIAQYPEQSFVLLIDEIHRMTKTLQDFLLPYLENGHV-M 122

Query: 137 MVG---EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE-DLKTIV 192
           ++G   E P    V    SR  +            PL D           +IE  L+  V
Sbjct: 123 LIGSTTENPIMSIVPAIRSRCQIFE--------FQPLSDT----------DIEIALRRAV 164

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR-------------VRDFAEVAHAK 239
                LT   V  +A   IA+ + G  RIA  +L               V+ FA+  H  
Sbjct: 165 TDIYNLTDDQVDAKALNLIAISAEGDLRIALNILETLHAIDQKQITVAAVQHFAQQQHFS 224

Query: 240 TITREIADAALLRLAIDKMGFDQLD--LRYLTMIARN 274
              +       L    D M     D  L YLT++ +N
Sbjct: 225 YDRKATKHYDYLSAYSDSMAGSDTDAALYYLTILLKN 261


>gi|313895502|ref|ZP_07829058.1| replication-associated recombination protein A [Selenomonas sp.
           oral taxon 137 str. F0430]
 gi|312975628|gb|EFR41087.1| replication-associated recombination protein A [Selenomonas sp.
           oral taxon 137 str. F0430]
          Length = 444

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 80/159 (50%), Gaps = 18/159 (11%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVF---IEAAKARAEALDHV 57
           M +++GL  + + +  A+   +RP TLE+F GQ       K+    IE+     + +  +
Sbjct: 1   MDEQQGLFEQALHRPLAE--RVRPHTLEDFVGQEHLLGKGKILRRLIES-----DQITSM 53

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFI 111
           +F GPPG+GKTTLAQ++A      F + S  V     D+  ++   E       R ++F+
Sbjct: 54  IFWGPPGVGKTTLAQIIAARTKAEFITFSA-VSGGIKDIRTVMQEAERKRSYGQRVIIFV 112

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN 150
           DEIHR +   ++   P +E   + +++G      S +IN
Sbjct: 113 DEIHRFNKAQQDAFLPFVEKGSI-VLIGATTENPSFEIN 150


>gi|254556440|ref|YP_003062857.1| recombination factor protein RarA [Lactobacillus plantarum JDM1]
 gi|254045367|gb|ACT62160.1| recombination factor protein RarA [Lactobacillus plantarum JDM1]
          Length = 420

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 116/277 (41%), Gaps = 50/277 (18%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALD-HV----LFVGPPGLGKTTLAQVVAR 76
           +RP++LE+  GQ +        ++A +   + +D HV    +  GPPG GKT+LAQ++A 
Sbjct: 11  MRPQSLEQMVGQQD-------LLKAGQPLRQIIDQHVNIPLILWGPPGTGKTSLAQIIAS 63

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           +    F + +     KA    A+    E   VL IDEIHR++  +++ L P +E+  + +
Sbjct: 64  QDDYPFVAFNASTENKAQLTKAIAQYPEQSFVLLIDEIHRMTKTLQDFLLPYLENGHV-M 122

Query: 137 MVG---EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE-DLKTIV 192
           ++G   E P    V    SR  +            PL D           +IE  L+  V
Sbjct: 123 LIGSTTENPIMSIVPAIRSRCQIFE--------FQPLSDT----------DIEIALRRAV 164

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR-------------VRDFAEVAHAK 239
                LT   V  +A   IA+ + G  RIA  +L               V+ FA+  H  
Sbjct: 165 TDIYNLTDDQVDAKALNLIAISAEGDLRIALNILETLHAIDQKQITVAAVQHFAQQQHFS 224

Query: 240 TITREIADAALLRLAIDKMGFDQLD--LRYLTMIARN 274
              +       L    D M     D  L YLT++ +N
Sbjct: 225 YDRKATKHYDYLSAYSDSMAGSDTDAALYYLTILLKN 261


>gi|262280584|ref|ZP_06058368.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
 gi|262258362|gb|EEY77096.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
          Length = 421

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 63/195 (32%), Positives = 96/195 (49%), Gaps = 36/195 (18%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPR L E  GQ   +   + L+  I+        L  ++F GPPG+GKTT+A ++A+ +
Sbjct: 12  LRPRDLSEIIGQDHLLGENAPLRQMIDQGH-----LPSIIFWGPPGVGKTTIALLLAQAI 66

Query: 79  GVNFRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
              F S S           VIA++GD   LLT      V+FIDEIHR +   ++ L  A+
Sbjct: 67  DRPFVSLSALNTGVKELREVIAESGD---LLT-----PVVFIDEIHRFNKSQQDALLGAV 118

Query: 130 EDFQLDLM--VGEGPSARSVKINLSR---FTLIAATTRV--GLLTNPLQ-DRFGIPIRLN 181
           E  ++ L+    E PS       LSR   +TL +  +     L+ N LQ D+F   ++  
Sbjct: 119 EKGKITLVGATTENPSFEVNSALLSRCQVYTLNSLDSEAIQTLINNALQADKF---LKER 175

Query: 182 FYEIEDLKTIVQRGA 196
           +  IE+   ++Q  A
Sbjct: 176 YIHIEEYDALIQFAA 190


>gi|139436949|ref|ZP_01771109.1| Hypothetical protein COLAER_00082 [Collinsella aerofaciens ATCC
           25986]
 gi|133776596|gb|EBA40416.1| Hypothetical protein COLAER_00082 [Collinsella aerofaciens ATCC
           25986]
          Length = 454

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/128 (34%), Positives = 64/128 (50%), Gaps = 17/128 (13%)

Query: 22  LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP +L+E+ GQ +A    S L+  IE      + L  V+  GP G GKTTLA ++A   
Sbjct: 28  MRPNSLDEYVGQQKAVGKGSWLRAAIEH-----DVLSSVILYGPAGTGKTTLAHIIANHT 82

Query: 79  GVNFRSTSGPVIAKAGDLAAL-------LTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
              F   S  V     DL  +       L   + R +LFIDEIHR S   ++ L  A+E+
Sbjct: 83  KSEFVEVSA-VTGTVKDLRRVIDEAKTRLNTYDRRTILFIDEIHRFSKSQQDALLHAVEN 141

Query: 132 FQLDLMVG 139
             + +M+G
Sbjct: 142 RTV-IMIG 148


>gi|300767164|ref|ZP_07077076.1| crossover junction endodeoxyribonuclease [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|300494983|gb|EFK30139.1| crossover junction endodeoxyribonuclease [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
          Length = 422

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 116/277 (41%), Gaps = 50/277 (18%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALD-HV----LFVGPPGLGKTTLAQVVAR 76
           +RP++LE+  GQ +        ++A +   + +D HV    +  GPPG GKT+LAQ++A 
Sbjct: 13  MRPQSLEQMVGQQD-------LLKAGQPLRQIIDQHVNIPLILWGPPGTGKTSLAQIIAS 65

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           +    F + +     KA    A+    E   VL IDEIHR++  +++ L P +E+  + +
Sbjct: 66  QDDYPFVAFTASTENKAQLTKAIAQYPEQSFVLLIDEIHRMTKTLQDFLLPYLENGHV-M 124

Query: 137 MVG---EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE-DLKTIV 192
           ++G   E P    V    SR  +            PL D           +IE  L+  V
Sbjct: 125 LIGSTTENPIMSIVPAIRSRCQIFE--------FQPLSDT----------DIEIALRRAV 166

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR-------------VRDFAEVAHAK 239
                LT   V  +A   IA+ + G  RIA  +L               V+ FA+  H  
Sbjct: 167 TDIYNLTDDQVDAKALNLIAISAEGDLRIALNILETLHAIDQKQITVAAVQHFAQQQHFS 226

Query: 240 TITREIADAALLRLAIDKMGFDQLD--LRYLTMIARN 274
              +       L    D M     D  L YLT++ +N
Sbjct: 227 YDRKATKHYDYLSAYSDSMAGSDTDAALYYLTILLKN 263


>gi|319947814|ref|ZP_08022008.1| recombination factor protein RarA [Dietzia cinnamea P4]
 gi|319438538|gb|EFV93464.1| recombination factor protein RarA [Dietzia cinnamea P4]
          Length = 417

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 63/119 (52%), Gaps = 15/119 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL+E  GQ   +   S L+  +E     +     V+  GPPG GKTTLA +VA   
Sbjct: 5   MRPRTLDEVIGQEHLLRPNSPLRRLVEGRGGSS-----VILYGPPGTGKTTLANLVASTS 59

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMED 131
           G +F + S  + A   D+ A++ +         R VLFIDE+HR S   ++ L  A+E+
Sbjct: 60  GRHFVALSA-LSAGVKDVRAVIDDARTRQVHGQRTVLFIDEVHRFSKSQQDALLAAVEN 117


>gi|260426534|ref|ZP_05780513.1| recombination factor protein RarA [Citreicella sp. SE45]
 gi|260421026|gb|EEX14277.1| recombination factor protein RarA [Citreicella sp. SE45]
          Length = 432

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 66/213 (30%), Positives = 96/213 (45%), Gaps = 38/213 (17%)

Query: 21  LLRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           LLRP TL++  GQ   V   S L+  I A     +AL  +L  GPPG+GKT++A+ V + 
Sbjct: 18  LLRPETLDDVIGQKALVAPGSLLRRRIAA-----DALGSLLLYGPPGIGKTSIARAVGQM 72

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVL-FIDEIHRLSIIVEEILYPAMEDFQLDL 136
           LG  FR      + +  D+  +      R VL F+DE+HRLS    + L    E+   D 
Sbjct: 73  LGKEFRVLHAAGV-RVSDIRKIADEARIRPVLMFVDEVHRLSSTQADDLLTICEEGTADF 131

Query: 137 M--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           +    E P     K  +SR  +                     ++L    IED++ +++R
Sbjct: 132 IGATTENPYHAIPKALISRSQV---------------------LKLEPLAIEDMEEVLRR 170

Query: 195 G-AKLTGLAVTDEAACE----IAMRSRGTPRIA 222
           G A+L    +  E A E    IA RS G  R A
Sbjct: 171 GMARLASDGIEVEIAPEHLRLIAGRSGGDARKA 203


>gi|320528982|ref|ZP_08030074.1| recombination factor protein RarA [Selenomonas artemidis F0399]
 gi|320138612|gb|EFW30502.1| recombination factor protein RarA [Selenomonas artemidis F0399]
          Length = 447

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 80/159 (50%), Gaps = 18/159 (11%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVF---IEAAKARAEALDHV 57
           M +++GL  + + +  A+   +RP TLE+F GQ       K+    IE+     + +  +
Sbjct: 4   MDEQQGLFEQALHRPLAE--RVRPHTLEDFVGQEHLLGKGKILRRLIES-----DQITSM 56

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFI 111
           +F GPPG+GKTTLAQ++A      F + S  V     D+  ++   E       R ++F+
Sbjct: 57  IFWGPPGVGKTTLAQIIAARTKAEFITFSA-VSGGIKDIRTVMQEAERKRSYGQRVIIFV 115

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN 150
           DEIHR +   ++   P +E   + +++G      S +IN
Sbjct: 116 DEIHRFNKAQQDAFLPFVEKGSI-VLIGATTENPSFEIN 153


>gi|15806898|ref|NP_295621.1| recombination factor protein RarA [Deinococcus radiodurans R1]
 gi|6459682|gb|AAF11452.1|AE002029_1 conserved hypothetical protein [Deinococcus radiodurans R1]
          Length = 434

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 69/133 (51%), Gaps = 17/133 (12%)

Query: 22  LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPRT+ E  GQ     A   L   +++ +     L  ++  GPPG+GKTTLA+++A E+
Sbjct: 14  LRPRTVAEVAGQSHLLGAGKPLTRVLQSGR-----LGSLILWGPPGVGKTTLARLLAGEV 68

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           G +F + S  V A   D+   +   E       R VLF+DEIHR +   ++ L P +E  
Sbjct: 69  GAHFIALSA-VSAGVKDVRDAVAEAEREQARGRRTVLFLDEIHRFNKAQQDALLPHVESG 127

Query: 133 QLDLM--VGEGPS 143
            L L+    E PS
Sbjct: 128 LLTLIGATTENPS 140


>gi|311694708|gb|ADP97581.1| recombination factor protein RarA [marine bacterium HP15]
          Length = 445

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 119/278 (42%), Gaps = 49/278 (17%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP +L ++ GQ       K    A +     L  ++  GPPG+GKTT AQ++A    ++
Sbjct: 19  MRPASLNDYVGQAHLVGPGKPLRRAVEQ--GQLHSMILWGPPGVGKTTFAQLLANVGDLS 76

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F + S  V++   ++ A++    +R        +LF+DE+HR +   ++   P +ED   
Sbjct: 77  FETVSA-VLSGVKEIRAVVERARNRKQSQGRDTLLFVDEVHRFNKSQQDAFLPHIEDGTF 135

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
            + VG      S ++N    + + + TRV +L N               E ED+  +++R
Sbjct: 136 -IFVGATTENPSFELN----SALLSRTRVYVLKN--------------LEEEDILQLLRR 176

Query: 195 GAKLTG-----LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
              +       L V ++    +A  S G  R A  +L    D AE   A T         
Sbjct: 177 ALTVDEGFGGRLRVDEDVLTLMAAASGGDARRALNILEVAADLAEPDEAGT--------- 227

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISA 287
                 D++  DQL+    T + R   GG V  + ISA
Sbjct: 228 ------DRVTADQLEQVMQTSLRRFDKGGDVFYDQISA 259


>gi|254477504|ref|ZP_05090890.1| AAA ATPase, central region [Ruegeria sp. R11]
 gi|214031747|gb|EEB72582.1| AAA ATPase, central region [Ruegeria sp. R11]
          Length = 444

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 70/137 (51%), Gaps = 14/137 (10%)

Query: 22  LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP++L E  GQ       + L V + +      +L  ++  GPPG+GKTT+A+++ARE 
Sbjct: 32  LRPQSLAEVIGQTHVLGPEAPLGVMLASG-----SLSSLILWGPPGVGKTTIARLLARET 86

Query: 79  GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
            ++F   S      P + K  + A +        +LF+DEIHR +   ++   P MED  
Sbjct: 87  DLHFVQISAIFSGVPDLKKVFEAAKIRRQNGQGTLLFVDEIHRFNKAQQDGFLPHMEDGT 146

Query: 134 LDLMVGEGPSARSVKIN 150
           + L+VG      S ++N
Sbjct: 147 I-LLVGATTENPSFELN 162


>gi|113970302|ref|YP_734095.1| recombination factor protein RarA [Shewanella sp. MR-4]
 gi|113884986|gb|ABI39038.1| Recombination protein MgsA [Shewanella sp. MR-4]
          Length = 443

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 118/262 (45%), Gaps = 35/262 (13%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRT+ E+ GQ         L+  +EA +A +     ++  GPPG GKTTLA+++A   
Sbjct: 19  MRPRTIAEYMGQAHLLGEGQPLRQALEAGRAHS-----MMLWGPPGTGKTTLAELIAHYS 73

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAMED 131
             +    S  V +   D+ A +   +        R +LF+DE+HR +   ++   P +ED
Sbjct: 74  NAHVERISA-VTSGVKDIRAAIEQAQAVAQSRGQRTLLFVDEVHRFNKSQQDAFLPFIED 132

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
             + + +G      S +IN      + +  RV L+    QD          + I    T 
Sbjct: 133 GTV-IFIGATTENPSFEIN----NALLSRARVYLIKRLSQDEI-------VHIITQALTD 180

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
            +RG     L +  +   ++A    G  R A  LL  + D   VA + + T E+    L+
Sbjct: 181 TERGLGQRQLVMPTDVLNKLAQLCDGDARKALNLLELMSDM--VADSGSFTTEM----LV 234

Query: 252 RLAIDKM-GFDQLDLRYLTMIA 272
           ++A  ++ GFD+   ++  +I+
Sbjct: 235 QVAGHQVAGFDKNGDQFYDLIS 256


>gi|325298651|ref|YP_004258568.1| AAA ATPase central domain-containing protein [Bacteroides
           salanitronis DSM 18170]
 gi|324318204|gb|ADY36095.1| AAA ATPase central domain protein [Bacteroides salanitronis DSM
           18170]
          Length = 424

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 52/149 (34%), Positives = 77/149 (51%), Gaps = 22/149 (14%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP+TL+++ GQ   V   + L+  I+A +     +   +  GPPG+GKTTLAQ++A  L
Sbjct: 9   MRPKTLDDYIGQKHLVGEGAVLRRMIDAGR-----ISSFILWGPPGVGKTTLAQIIANRL 63

Query: 79  GVNFRS----TSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
            V F +    TSG      VI KA +     +      +LFIDEIHR S   ++ L  A+
Sbjct: 64  EVPFYTLSAVTSGVKEVRDVIEKARNGRFFSSQ---SPILFIDEIHRFSKSQQDSLLGAV 120

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTL 156
           E   + L+    E PS   ++  LSR  L
Sbjct: 121 ETGVVTLIGATTENPSFEVIRPLLSRCQL 149


>gi|149277254|ref|ZP_01883396.1| ATPase, AAA family protein [Pedobacter sp. BAL39]
 gi|149232131|gb|EDM37508.1| ATPase, AAA family protein [Pedobacter sp. BAL39]
          Length = 426

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/140 (35%), Positives = 74/140 (52%), Gaps = 10/140 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP++L+E+ GQ        V  +A +++   L  ++F GPPG+GKTTLA ++++ L   
Sbjct: 11  MRPQSLDEYVGQQHIVGPDAVLRKALQSKQ--LPSMIFWGPPGVGKTTLAYIISQTLDRP 68

Query: 82  FRSTSG-----PVIAKAGDLAALLTN-LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F + S        I    D AALL + L    +LFIDEIHR S   ++ L  A+E   + 
Sbjct: 69  FFNLSAINSGVKDIRDVIDRAALLKDSLMGLPILFIDEIHRFSKSQQDSLLGAVERGLVT 128

Query: 136 LM--VGEGPSARSVKINLSR 153
           L+    E PS   +   LSR
Sbjct: 129 LIGATTENPSFEVISALLSR 148


>gi|213418776|ref|ZP_03351842.1| Holliday junction DNA helicase B [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
 gi|213855440|ref|ZP_03383680.1| Holliday junction DNA helicase B [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
          Length = 43

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/40 (62%), Positives = 31/40 (77%)

Query: 293 RDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           R+ IED++EPY+IQQGF+QRTPRGR+    AW H GI  P
Sbjct: 1   RETIEDVLEPYLIQQGFLQRTPRGRMATVRAWNHFGITPP 40


>gi|224023693|ref|ZP_03642059.1| hypothetical protein BACCOPRO_00409 [Bacteroides coprophilus DSM
           18228]
 gi|224016915|gb|EEF74927.1| hypothetical protein BACCOPRO_00409 [Bacteroides coprophilus DSM
           18228]
          Length = 424

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 75/147 (51%), Gaps = 18/147 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP+TL+++ GQ   V   + L+  I+A +     +   +  GPPG+GKTTLAQ++A  L
Sbjct: 9   MRPKTLDDYIGQKHLVGEGAVLRKMIDAGR-----ISSFILWGPPGVGKTTLAQIIANRL 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V +   D+  ++          +   +LFIDEIHR S   ++ L  A+E 
Sbjct: 64  ETPFYTLSA-VTSGVKDVRDVIDKARSNRFFSQQSPILFIDEIHRFSKSQQDSLLGAVET 122

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156
             + L+    E PS   ++  LSR  L
Sbjct: 123 GVVTLIGATTENPSFEVIRPLLSRCQL 149


>gi|254558789|ref|YP_003065884.1| recombination protein [Methylobacterium extorquens DM4]
 gi|254266067|emb|CAX21819.1| recombination protein [Methylobacterium extorquens DM4]
          Length = 437

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 62/130 (47%), Gaps = 11/130 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPR L E  GQ               +R+  L  ++F GPPG GKTT+A+++A E  ++
Sbjct: 22  LRPRRLAEVVGQEHLTGPDGALTRLLASRS--LGSLVFWGPPGTGKTTVARLLAHETALH 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F   S  + +  GDL  +      R       +LF+DEIHR +    +   P MED  + 
Sbjct: 80  FEQISA-IFSGIGDLRKVFEAARKRRATGQGTLLFVDEIHRFNRAQLDAFLPVMEDGTVT 138

Query: 136 LM--VGEGPS 143
           L+    E PS
Sbjct: 139 LVGATTENPS 148


>gi|206891135|ref|YP_002249330.1| ATP/GTP-binding domain protein [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|206743073|gb|ACI22130.1| ATP/GTP-binding domain protein [Thermodesulfovibrio yellowstonii
           DSM 11347]
          Length = 414

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 61/115 (53%), Gaps = 7/115 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           + PR L+E+ GQ    S  K+   A  +  + +  ++  GPPG GKT LA+++A +    
Sbjct: 21  MAPRNLDEYVGQSHIISEGKLLRRAIDS--DKITSLILYGPPGTGKTALARIIANKTKAY 78

Query: 82  FRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
           F+  +        I K   LA    +  ++ +LFIDEIHRL+ I ++ L P +E+
Sbjct: 79  FQWLNATTLNIEEIRKQVSLAKQRLSRGEKTILFIDEIHRLNRISQDALLPDIEE 133


>gi|313678201|ref|YP_004055941.1| AAA family ATPase [Mycoplasma bovis PG45]
 gi|312950489|gb|ADR25084.1| ATPase, AAA family [Mycoplasma bovis PG45]
          Length = 407

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 59/109 (54%), Gaps = 9/109 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+TL++  GQ +    LK   + AK R  +    +F G  G GKT+ A  +A +LG+ 
Sbjct: 8   LRPKTLDDIIGQKQVVDLLK---KVAKDRIHS--SFIFFGESGTGKTSSAVALANDLGLK 62

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           +   +  V +KA     L   L D +VL IDEIHRL+   ++IL   +E
Sbjct: 63  YNYFNASVNSKA----ELTKMLSDNEVLIIDEIHRLNKDKQDILLSYLE 107


>gi|223983856|ref|ZP_03634020.1| hypothetical protein HOLDEFILI_01301 [Holdemania filiformis DSM
           12042]
 gi|223964180|gb|EEF68528.1| hypothetical protein HOLDEFILI_01301 [Holdemania filiformis DSM
           12042]
          Length = 420

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 72/134 (53%), Gaps = 12/134 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVF---IEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP TL+E  GQ       +V    IE  +     L  ++F GPPG GKTTLA V+A EL
Sbjct: 9   MRPETLDEVIGQQHLIGPGQVIRRCIEQGR-----LFSMIFYGPPGTGKTTLASVLANEL 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
            + +R  +  V     +L  +    +  D  VL IDE+HRL+   +++L P +E+ ++ +
Sbjct: 64  HLPYRLFNA-VTGNKKELDTIFEEAKFYDGLVLIIDEVHRLNKDKQDLLLPHVENGRI-I 121

Query: 137 MVGEGPSARSVKIN 150
           ++G   S  ++ IN
Sbjct: 122 LIGATTSNPTMAIN 135


>gi|169829377|ref|YP_001699535.1| Holliday junction ATP-dependent DNA helicase ruvB [Lysinibacillus
          sphaericus C3-41]
 gi|168993865|gb|ACA41405.1| Holliday junction ATP-dependent DNA helicase ruvB [Lysinibacillus
          sphaericus C3-41]
          Length = 75

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/61 (47%), Positives = 39/61 (63%), Gaps = 1/61 (1%)

Query: 5  EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
          E +++   S  D    L LRP+ L ++ GQ +   NL++FIEAAK R E+LDHVL  GPP
Sbjct: 3  ERMMASEASGYDEQFELSLRPQRLAQYIGQHKVKENLQIFIEAAKLRQESLDHVLLYGPP 62

Query: 64 G 64
          G
Sbjct: 63 G 63


>gi|295396093|ref|ZP_06806276.1| AAA family ATPase [Brevibacterium mcbrellneri ATCC 49030]
 gi|294971034|gb|EFG46926.1| AAA family ATPase [Brevibacterium mcbrellneri ATCC 49030]
          Length = 460

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 61/120 (50%), Gaps = 11/120 (9%)

Query: 22  LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPR+++E  GQ       S L+   E+          V+  GPPG+GKTT+A  V+   
Sbjct: 20  MRPRSIDELVGQDHLTFKGSPLRQLAESDPRGVAGATSVILYGPPGVGKTTIAHAVSHAE 79

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNL-EDRD------VLFIDEIHRLSIIVEEILYPAMED 131
           G  F   S  + A   D+  ++ N   DR+      VLF+DEIHR S   ++ L PA+E+
Sbjct: 80  GRRFVELSA-ITAGVKDVREVIENARRDREMRGLTTVLFLDEIHRFSKAQQDALLPAVEN 138


>gi|256850208|ref|ZP_05555637.1| recombination factor protein RarA [Lactobacillus crispatus
           MV-1A-US]
 gi|256712845|gb|EEU27837.1| recombination factor protein RarA [Lactobacillus crispatus
           MV-1A-US]
          Length = 420

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 64/119 (53%), Gaps = 5/119 (4%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+TL +  GQ E     K      K        +L  GPPG GKT+LAQ++A+E    
Sbjct: 11  MRPQTLADMVGQSELLGPGKALRNIIKQHVNI--SLLLWGPPGTGKTSLAQIIAKENDYP 68

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
           F S +  +  KA  L  ++   + +  VL IDEIHR++  +++ L P +E+  + L+VG
Sbjct: 69  FASFNASIDNKA-QLNNIINAYKYQTLVLLIDEIHRMTKNLQDFLLPYLENGHV-LLVG 125


>gi|239932410|ref|ZP_04689363.1| recombination factor protein RarA [Streptomyces ghanaensis ATCC
           14672]
 gi|291440776|ref|ZP_06580166.1| recombination factor protein RarA [Streptomyces ghanaensis ATCC
           14672]
 gi|291343671|gb|EFE70627.1| recombination factor protein RarA [Streptomyces ghanaensis ATCC
           14672]
          Length = 451

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 63/127 (49%), Gaps = 11/127 (8%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL+E  GQ   ++  S L+  +    +       V+  GPPG GKTTLA VV++  
Sbjct: 27  MRPRTLDEVVGQQHLLKPGSPLRRLVGEGSSGPAGPSSVILWGPPGTGKTTLAYVVSKAT 86

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAMED 131
              F   S  + A   ++ A++              VLF+DEIHR S   ++ L PA+E+
Sbjct: 87  NKRFVELSA-ITAGVKEVRAVIDGARRASGGYGQETVLFLDEIHRFSKAQQDSLLPAVEN 145

Query: 132 FQLDLMV 138
             + L+ 
Sbjct: 146 RWVTLIA 152


>gi|115380346|ref|ZP_01467349.1| AAA ATPase, central region [Stigmatella aurantiaca DW4/3-1]
 gi|115362645|gb|EAU61877.1| AAA ATPase, central region [Stigmatella aurantiaca DW4/3-1]
          Length = 284

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 73/148 (49%), Gaps = 18/148 (12%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP TL +F GQ         L+  IE      + +  ++  GPPG GKTTLA+V+A+  
Sbjct: 22  MRPSTLADFAGQEHLTGEGRFLRRVIEQ-----DQVPSLILWGPPGTGKTTLARVIAQAT 76

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131
           G +F S S  V++   D+   +   ++       R +LFIDEIHR +   ++ L P +E 
Sbjct: 77  GASFESLSA-VLSGVKDIRETVARAQERWRLHRQRTLLFIDEIHRFNKSQQDALLPHVEK 135

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLI 157
             + L+    E PS       LSR  ++
Sbjct: 136 GTVTLIGATTENPSFEVNAALLSRARVV 163


>gi|310823298|ref|YP_003955656.1| ATPase [Stigmatella aurantiaca DW4/3-1]
 gi|309396370|gb|ADO73829.1| AAA ATPase [Stigmatella aurantiaca DW4/3-1]
          Length = 443

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 73/148 (49%), Gaps = 18/148 (12%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP TL +F GQ         L+  IE      + +  ++  GPPG GKTTLA+V+A+  
Sbjct: 22  MRPSTLADFAGQEHLTGEGRFLRRVIEQ-----DQVPSLILWGPPGTGKTTLARVIAQAT 76

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131
           G +F S S  V++   D+   +   ++       R +LFIDEIHR +   ++ L P +E 
Sbjct: 77  GASFESLSA-VLSGVKDIRETVARAQERWRLHRQRTLLFIDEIHRFNKSQQDALLPHVEK 135

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLI 157
             + L+    E PS       LSR  ++
Sbjct: 136 GTVTLIGATTENPSFEVNAALLSRARVV 163


>gi|227878587|ref|ZP_03996511.1| crossover junction endodeoxyribonuclease [Lactobacillus crispatus
           JV-V01]
 gi|293380972|ref|ZP_06627004.1| recombination factor protein RarA [Lactobacillus crispatus 214-1]
 gi|227861822|gb|EEJ69417.1| crossover junction endodeoxyribonuclease [Lactobacillus crispatus
           JV-V01]
 gi|290922469|gb|EFD99439.1| recombination factor protein RarA [Lactobacillus crispatus 214-1]
          Length = 420

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 64/119 (53%), Gaps = 5/119 (4%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+TL +  GQ E     K      K        +L  GPPG GKT+LAQ++A+E    
Sbjct: 11  MRPQTLADMVGQSELLGPGKALRNIIKQHVNI--SLLLWGPPGTGKTSLAQIIAKENDYP 68

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
           F S +  +  KA  L  ++   + +  VL IDEIHR++  +++ L P +E+  + L+VG
Sbjct: 69  FASFNASIDNKA-QLNNIINAYKYQTLVLLIDEIHRMTKNLQDFLLPYLENGHV-LLVG 125


>gi|228910235|ref|ZP_04074053.1| hypothetical protein bthur0013_43830 [Bacillus thuringiensis IBL
           200]
 gi|228849399|gb|EEM94235.1| hypothetical protein bthur0013_43830 [Bacillus thuringiensis IBL
           200]
          Length = 428

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 85/330 (25%), Positives = 132/330 (40%), Gaps = 65/330 (19%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ ++E  GQ       K+     +A       ++  GPPG GKT++A  +A   G  
Sbjct: 9   MRPKNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAIAGSTGTP 66

Query: 82  FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
           FR  +  V     D+  ++    +    VL +DE+HRL    ++ L P +E   L     
Sbjct: 67  FRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLL----- 120

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEI----ED-----LK 189
                          TLI ATT     +NP       I  R   +E+    ED     LK
Sbjct: 121 ---------------TLIGATT-----SNPFHAINSAIRSRCQIFELHALTEDDILIGLK 160

Query: 190 TIV---QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR--VRDFAEVAHAKTITRE 244
           + +   ++G     + VTDEA    A  S G  R A   L    +  F     A  IT E
Sbjct: 161 SALEDKEKGLGKYAVTVTDEALHHFANASGGDMRSAYNALELAVLSSFTTDDQAAEITLE 220

Query: 245 IADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           IA+  L + +   DK G    D+  L+   ++  G  V              A+  L   
Sbjct: 221 IAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDVNA------------ALHYLAR- 265

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
            +I+ G +Q    GR L+ +A++ +G+  P
Sbjct: 266 -LIEAGDLQSI--GRRLLIMAYEDIGLASP 292


>gi|312977419|ref|ZP_07789167.1| ATPase, AAA family [Lactobacillus crispatus CTV-05]
 gi|310895850|gb|EFQ44916.1| ATPase, AAA family [Lactobacillus crispatus CTV-05]
          Length = 420

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 64/119 (53%), Gaps = 5/119 (4%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+TL +  GQ E     K      K        +L  GPPG GKT+LAQ++A+E    
Sbjct: 11  MRPQTLADMVGQSELLGPGKALRNIIKQHVNI--SLLLWGPPGTGKTSLAQIIAKENDYP 68

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
           F S +  +  KA  L  ++   + +  VL IDEIHR++  +++ L P +E+  + L+VG
Sbjct: 69  FASFNASIDNKA-QLNNIINAYKYQTFVLLIDEIHRMTKNLQDFLLPYLENGHV-LLVG 125


>gi|169794256|ref|YP_001712049.1| recombination factor protein RarA [Acinetobacter baumannii AYE]
 gi|213158747|ref|YP_002321168.1| ATPase, AAA family [Acinetobacter baumannii AB0057]
 gi|215481814|ref|YP_002323996.1| ATPase family associated with various cellular activities (AAA)
           family protein [Acinetobacter baumannii AB307-0294]
 gi|301345879|ref|ZP_07226620.1| recombination factor protein RarA [Acinetobacter baumannii AB056]
 gi|301509947|ref|ZP_07235184.1| recombination factor protein RarA [Acinetobacter baumannii AB058]
 gi|301594525|ref|ZP_07239533.1| recombination factor protein RarA [Acinetobacter baumannii AB059]
 gi|332850334|ref|ZP_08432668.1| recombination factor protein RarA [Acinetobacter baumannii 6013150]
 gi|332871558|ref|ZP_08440052.1| recombination factor protein RarA [Acinetobacter baumannii 6013113]
 gi|169147183|emb|CAM85042.1| putative ATPase [Acinetobacter baumannii AYE]
 gi|213057907|gb|ACJ42809.1| ATPase, AAA family [Acinetobacter baumannii AB0057]
 gi|213987786|gb|ACJ58085.1| ATPase family associated with various cellular activities (AAA)
           family protein [Acinetobacter baumannii AB307-0294]
 gi|332730792|gb|EGJ62102.1| recombination factor protein RarA [Acinetobacter baumannii 6013150]
 gi|332731412|gb|EGJ62704.1| recombination factor protein RarA [Acinetobacter baumannii 6013113]
          Length = 421

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 64/195 (32%), Positives = 96/195 (49%), Gaps = 36/195 (18%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPR L E  GQ   +   + L+  I+        L  ++F GPPG+GKTT+A ++A+ +
Sbjct: 12  LRPRDLSEIIGQDHLLGEHAPLRQMIDQGH-----LPSIIFWGPPGVGKTTIALLLAQAI 66

Query: 79  GVNFRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
              F S S           VIA++GD   LLT      V+FIDEIHR +   ++ L  A+
Sbjct: 67  DRPFVSLSALNTGVKELREVIAESGD---LLT-----PVVFIDEIHRFNKSQQDALLGAV 118

Query: 130 EDFQLDLM--VGEGPSARSVKINLSR---FTLIAATTRV--GLLTNPLQ-DRFGIPIRLN 181
           E  ++ L+    E PS       LSR   +TL +  +     LL N LQ D+F   ++  
Sbjct: 119 EKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDSEAIQMLLNNALQNDKF---LKER 175

Query: 182 FYEIEDLKTIVQRGA 196
           +  IE+   ++Q  A
Sbjct: 176 YIHIEEYDALLQFAA 190


>gi|297588295|ref|ZP_06946938.1| AAA family ATPase [Finegoldia magna ATCC 53516]
 gi|297573668|gb|EFH92389.1| AAA family ATPase [Finegoldia magna ATCC 53516]
          Length = 431

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 72/147 (48%), Gaps = 16/147 (10%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP++L+++ GQ       K+     KA  + +  ++F GPPG GKTTLA++++ +    
Sbjct: 22  LRPKSLDKYFGQSHVVGEGKLLNRLIKA--DKIPSMIFYGPPGTGKTTLAEIISNQTNSL 79

Query: 82  FRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           F   S           VI+ A +  ++      + VLFIDEIHR +   ++ L   +ED 
Sbjct: 80  FERLSAISSGVKDIREVISTAKNNLSMYNK---KTVLFIDEIHRFNKSQQDALLGYVEDG 136

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLI 157
            + L+    E P     K  LSR  +I
Sbjct: 137 TITLIGATTENPFFEVNKALLSRCQII 163


>gi|325287034|ref|YP_004262824.1| AAA ATPase central domain-containing protein [Cellulophaga lytica
           DSM 7489]
 gi|324322488|gb|ADY29953.1| AAA ATPase central domain protein [Cellulophaga lytica DSM 7489]
          Length = 425

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 65/143 (45%), Gaps = 15/143 (10%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+TL E+  Q     +     +  K     L  ++  GPPG GKTTLA ++A E+   
Sbjct: 9   VRPKTLTEYVSQTHLVGDNGTLTQQIKRGI--LPSLILWGPPGTGKTTLANIIANEIDRP 66

Query: 82  FRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           F + S           VI KA     L T      +LFIDEIHR S   ++ L  A+E  
Sbjct: 67  FYTLSAISSGVKDVREVIEKAKKSGGLFTT--KNPILFIDEIHRFSKSQQDSLLAAVEKG 124

Query: 133 QLDLM--VGEGPSARSVKINLSR 153
            + L+    E PS   +   LSR
Sbjct: 125 WVTLIGATTENPSFEVIPALLSR 147


>gi|262046401|ref|ZP_06019363.1| recombination factor protein RarA [Lactobacillus crispatus
           MV-3A-US]
 gi|260573272|gb|EEX29830.1| recombination factor protein RarA [Lactobacillus crispatus
           MV-3A-US]
          Length = 421

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 64/119 (53%), Gaps = 5/119 (4%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+TL +  GQ E     K      K        +L  GPPG GKT+LAQ++A+E    
Sbjct: 12  MRPQTLADMVGQSELLGPGKALRNIIKQHVNI--SLLLWGPPGTGKTSLAQIIAKENDYP 69

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
           F S +  +  KA  L  ++   + +  VL IDEIHR++  +++ L P +E+  + L+VG
Sbjct: 70  FASFNASIDNKA-QLNNIINAYKYQTLVLLIDEIHRMTKNLQDFLLPYLENGHV-LLVG 126


>gi|319952206|ref|YP_004163473.1| aaa atpase central domain protein [Cellulophaga algicola DSM 14237]
 gi|319420866|gb|ADV47975.1| AAA ATPase central domain protein [Cellulophaga algicola DSM 14237]
          Length = 425

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 66/143 (46%), Gaps = 15/143 (10%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+TLE++  Q+    +        K     +  ++  GPPG GKTTLA ++A E G  
Sbjct: 9   IRPKTLEDYISQLHLVGDNGSLTHQIKKGI--IPSLILWGPPGTGKTTLANIIAMESGRP 66

Query: 82  FRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           F + S           VI KA     L T      +LFIDEIHR S   ++ L  A+E  
Sbjct: 67  FYTLSAINSGVKDIREVIDKAKQSGGLFTT--KNPILFIDEIHRFSKSQQDSLLAAVEKG 124

Query: 133 QLDLM--VGEGPSARSVKINLSR 153
            + L+    E PS   +   LSR
Sbjct: 125 WVTLIGATTENPSFEVIPALLSR 147


>gi|110678756|ref|YP_681763.1| recombination factor protein RarA [Roseobacter denitrificans OCh
           114]
 gi|109454872|gb|ABG31077.1| ATPase, AAA family protein, putative [Roseobacter denitrificans OCh
           114]
          Length = 441

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 60/117 (51%), Gaps = 9/117 (7%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           LLRP++L+E  GQ +  +        +   AE L  ++  GPPG+GKTT+A+++A    +
Sbjct: 25  LLRPQSLDEVIGQEKLLAEDGPL--GSMLAAERLTSLILWGPPGVGKTTIARLLAHRTDL 82

Query: 81  NFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMED 131
           +F   S  + +   DL  +     DR        LFIDEIHR +    + L P MED
Sbjct: 83  HFEQISA-IFSGVSDLKKVFQAARDRASLGQGTFLFIDEIHRFNKAQLDSLLPVMED 138


>gi|297584737|ref|YP_003700517.1| AAA ATPase central domain-containing protein [Bacillus
           selenitireducens MLS10]
 gi|297143194|gb|ADH99951.1| AAA ATPase central domain protein [Bacillus selenitireducens MLS10]
          Length = 443

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 60/117 (51%), Gaps = 10/117 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP TL+E  GQ        +   A +A  + L  ++F GPPG GKTTLA+V+A      
Sbjct: 21  MRPVTLDEIFGQTHIIGEGTLLRRAIEA--DRLSPMIFHGPPGTGKTTLAKVIANTTAAA 78

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131
           F   +  V A   D+  +++  +        R VLFIDEIHR +   ++ L P +ED
Sbjct: 79  FEQLNA-VTAGIKDVREMVSQAKSRLDYDHKRTVLFIDEIHRFNKGQQDALLPHVED 134


>gi|78776412|ref|YP_392727.1| recombination factor protein RarA [Sulfurimonas denitrificans DSM
           1251]
 gi|78496952|gb|ABB43492.1| Recombination protein MgsA [Sulfurimonas denitrificans DSM 1251]
          Length = 393

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 61/117 (52%), Gaps = 12/117 (10%)

Query: 21  LLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           LLRP   +E  GQ     +   L+V  +        L H  F GP G GKT++A+++A+ 
Sbjct: 7   LLRPSNFDELIGQDHLSKDKAPLRVLCQKG-----VLGHSFFFGPSGTGKTSIARIIAKT 61

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMED 131
           + + F   +   I K   L A+    ++   + ++FIDE+HRL+   +E+L P ME+
Sbjct: 62  MELPFYEFNATSI-KIEQLRAIFEQYKNTLQKPLIFIDEVHRLAKNQQEVLLPVMEN 117


>gi|163733781|ref|ZP_02141223.1| ATPase, AAA family protein, putative [Roseobacter litoralis Och
           149]
 gi|161392892|gb|EDQ17219.1| ATPase, AAA family protein, putative [Roseobacter litoralis Och
           149]
          Length = 441

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 63/120 (52%), Gaps = 15/120 (12%)

Query: 21  LLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           LLRP++L+E  GQ +  +    L   + A +  +     ++  GPPG+GKTT+A+++A +
Sbjct: 25  LLRPQSLDEVIGQEKLLAEDGPLGSMLAAGRVTS-----LILWGPPGVGKTTIARLLAHQ 79

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDRDV------LFIDEIHRLSIIVEEILYPAMED 131
             ++F   S  + +   DL  +     DR V      LFIDEIHR +    + L P MED
Sbjct: 80  TDLHFEQISA-IFSGVSDLKKVFQAARDRAVIGQGTFLFIDEIHRFNKAQLDSLLPVMED 138


>gi|299140803|ref|ZP_07033941.1| ATPase, AAA family [Prevotella oris C735]
 gi|298577769|gb|EFI49637.1| ATPase, AAA family [Prevotella oris C735]
          Length = 423

 Score = 59.7 bits (143), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 76/147 (51%), Gaps = 18/147 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP +L+E+ GQ   V   + L+  I+A +     +   +  GPPG+GKTTLAQ++A +L
Sbjct: 9   MRPHSLDEYVGQQHLVGRGAVLRKMIDAGR-----ISSFILWGPPGVGKTTLAQIIANKL 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V +   D+  ++   ++         +LFIDEIHR S   ++ L  A+E 
Sbjct: 64  ETPFYTLSA-VTSGVKDVRDVIEKAKNNRFFNTASPILFIDEIHRFSKSQQDSLLGAVER 122

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156
             + L+    E PS   ++  LSR  L
Sbjct: 123 GVVTLIGATTENPSFEVIRPLLSRCQL 149


>gi|302550147|ref|ZP_07302489.1| recombination factor protein RarA [Streptomyces viridochromogenes
           DSM 40736]
 gi|302467765|gb|EFL30858.1| recombination factor protein RarA [Streptomyces viridochromogenes
           DSM 40736]
          Length = 450

 Score = 59.7 bits (143), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/127 (34%), Positives = 64/127 (50%), Gaps = 12/127 (9%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL+E  GQ   ++  S L+  +  A   A     VL  GPPG GKTTLA VV++  
Sbjct: 27  MRPRTLDEVVGQQHLLKPGSPLRRLVGEASGPA-GPSSVLLWGPPGTGKTTLAYVVSKAT 85

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAMED 131
              F   S  + A   ++ A++              VLF+DEIHR S   ++ L PA+E+
Sbjct: 86  DARFVELSA-ITAGVKEVRAVIDGARRASGGYGKETVLFLDEIHRFSKAQQDSLLPAVEN 144

Query: 132 FQLDLMV 138
             + L+ 
Sbjct: 145 RWVTLIA 151


>gi|325270474|ref|ZP_08137076.1| AAA family ATPase [Prevotella multiformis DSM 16608]
 gi|324987197|gb|EGC19178.1| AAA family ATPase [Prevotella multiformis DSM 16608]
          Length = 406

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 75/147 (51%), Gaps = 18/147 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL+++ GQ   V   + L+  I++ +     +   +  GPPG+GKTTLAQ++A  L
Sbjct: 8   MRPRTLDDYIGQQHLVGEGAVLRRMIDSGR-----IASFILWGPPGVGKTTLAQIIAHRL 62

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V +   D+  ++   +          +LFIDEIHR S   ++ L  A+E 
Sbjct: 63  ETPFYTLSA-VTSGVKDVRDVIERAQKGRFFNSASPILFIDEIHRFSKSQQDSLLGAVEK 121

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156
             + L+    E PS   ++  LSR  L
Sbjct: 122 GTVTLIGATTENPSFEVIRPLLSRCQL 148


>gi|157375266|ref|YP_001473866.1| recombination factor protein RarA [Shewanella sediminis HAW-EB3]
 gi|157317640|gb|ABV36738.1| AAA ATPase, central domain protein [Shewanella sediminis HAW-EB3]
          Length = 443

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 117/262 (44%), Gaps = 35/262 (13%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP T+ ++ GQ         L+  +EA +A +     ++F GPPG GKTTLA++VA   
Sbjct: 19  MRPETISQYIGQTHLLGEGKPLRKALEAGRAHS-----MMFWGPPGTGKTTLAELVANYA 73

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131
             +    S  V +   ++   + + ++       R +LF+DE+HR +   ++   P +ED
Sbjct: 74  NAHVERISA-VTSGVKEIRTAIEHAKNVAESRGQRTLLFVDEVHRFNKSQQDAFLPFIED 132

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
             + + VG      S +IN      + +  RV L+     D     +R          T 
Sbjct: 133 GTV-IFVGATTENPSFEIN----NALLSRARVYLIKKLTNDEIVHIVRQAL-------TD 180

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE-IADAAL 250
            +RG     L + D  A ++A  S G  R A  L+  + D   +A   + + E I + A 
Sbjct: 181 EERGLGKRKLLIPDNVALKLANVSEGDARKALNLIELMSDM--LADGGSFSEEMIIEVAG 238

Query: 251 LRLAIDKMGFDQLDLRYLTMIA 272
            +LA    GFD+   ++  +I+
Sbjct: 239 QQLA----GFDKNGDQFYDLIS 256


>gi|241948511|ref|XP_002416978.1| DNA-dependent ATPase (MGS1), putative; homolog of human Werner
           helicase interacting protein (WHIP), putative [Candida
           dubliniensis CD36]
 gi|223640316|emb|CAX44566.1| DNA-dependent ATPase (MGS1), putative [Candida dubliniensis CD36]
          Length = 677

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 70/134 (52%), Gaps = 18/134 (13%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP++L++F GQ   V     L+  I+A     + +   L  G PG+GKT+LA+++A+  
Sbjct: 171 LRPKSLDDFFGQEKLVGKNGALRNIIQA-----DIIPSFLLWGVPGIGKTSLARIIAKTT 225

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131
              F   SG + + A  L  +    E+       R +LF+DEIHR +  V+++L P +E 
Sbjct: 226 SCKFVELSG-IDSNAKRLKEVFVQAENHKNLSGQRTILFLDEIHRFNKAVQDLLLPVIEK 284

Query: 132 FQLDLM--VGEGPS 143
             L ++    E PS
Sbjct: 285 GTLTVIGATTENPS 298


>gi|313637743|gb|EFS03102.1| replication-associated recombination protein A [Listeria seeligeri
           FSL S4-171]
          Length = 427

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 64/130 (49%), Gaps = 4/130 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP++L+E  GQ       K+     KA+   L  ++  GPPG+GKT++A  +A      
Sbjct: 10  MRPKSLDEIVGQTHLVGKDKIIYRMVKAKQ--LSSMILYGPPGIGKTSIASAIAGSTKYA 67

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR+ +     K   ++ A    +    +L +DE+HRL    ++ L P +E   + +++G 
Sbjct: 68  FRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQDFLLPLLESGAI-ILIGA 126

Query: 141 GPSARSVKIN 150
             S   + IN
Sbjct: 127 TTSNPYIAIN 136


>gi|313633161|gb|EFS00045.1| replication-associated recombination protein A [Listeria seeligeri
           FSL N1-067]
          Length = 427

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 64/130 (49%), Gaps = 4/130 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP++L+E  GQ       K+     KA+   L  ++  GPPG+GKT++A  +A      
Sbjct: 10  MRPKSLDEIVGQTHLVGKDKIIYRMVKAKQ--LSSMILYGPPGIGKTSIASAIAGSTKYA 67

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR+ +     K   ++ A    +    +L +DE+HRL    ++ L P +E   + +++G 
Sbjct: 68  FRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQDFLLPLLESGAI-ILIGA 126

Query: 141 GPSARSVKIN 150
             S   + IN
Sbjct: 127 TTSNPYIAIN 136


>gi|256379279|ref|YP_003102939.1| recombination factor protein RarA [Actinosynnema mirum DSM 43827]
 gi|255923582|gb|ACU39093.1| AAA ATPase central domain protein [Actinosynnema mirum DSM 43827]
          Length = 448

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/120 (36%), Positives = 64/120 (53%), Gaps = 16/120 (13%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL+E  GQ   +   + L+  +E A     A   VL  GPPG GKTTLA +V++  
Sbjct: 28  MRPRTLDEVVGQDHLLGPGAPLRRLVEGA-----APASVLLYGPPGTGKTTLATLVSQAT 82

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131
           G  F + S  + A   ++ A++   + R        VLFIDE+HR S   ++ L  A+ED
Sbjct: 83  GRRFAALSA-LSAGVKEVRAVIEEAKRRLVRSGEATVLFIDEVHRFSKTQQDALLGAVED 141


>gi|148263766|ref|YP_001230472.1| recombination factor protein RarA [Geobacter uraniireducens Rf4]
 gi|146397266|gb|ABQ25899.1| Recombination protein MgsA [Geobacter uraniireducens Rf4]
          Length = 435

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 99/217 (45%), Gaps = 40/217 (18%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRTL E+ GQ       K+  +  +   + L  ++F GPPG GKTTLA+++A     +
Sbjct: 22  MRPRTLAEYVGQEHLLGPGKLLRQLIET--DQLTSLIFWGPPGSGKTTLARIIAGATKSH 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED--F 132
           F   S  +++   ++  ++   +D       R +LF+DEIHR +   ++   P +E   F
Sbjct: 80  FIFFSA-ILSGIKEIREIVKEADDIRKFHGKRTILFVDEIHRFNKSQQDAFLPYVERGVF 138

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            +     E PS   +   LSR  +        L+ NPL +             E++  I+
Sbjct: 139 TIIGATTENPSFEVIAPLLSRCKV--------LVLNPLTE-------------EEITGIL 177

Query: 193 -------QRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
                  +RG     LA+ D+A   +A ++ G  R+A
Sbjct: 178 RQALADKERGLGALDLAIEDDALTFMAEQAGGDARVA 214


>gi|94985501|ref|YP_604865.1| recombination factor protein RarA [Deinococcus geothermalis DSM
           11300]
 gi|94555782|gb|ABF45696.1| AAA ATPase, central region [Deinococcus geothermalis DSM 11300]
          Length = 451

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 78/262 (29%), Positives = 110/262 (41%), Gaps = 51/262 (19%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPRTL E  GQ   +     L   ++  +     L  ++F GPPG+GKTTLA+++A E+
Sbjct: 34  LRPRTLAEVVGQGHLLGPGRPLTRLLQGGR-----LGSLIFWGPPGVGKTTLARLIASEV 88

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           G +F   S  V A   D+   +   E         +LF+DEIHR +   ++ L P +E  
Sbjct: 89  GAHFIPLSA-VSAGVKDVREAVMEAERLRARGQPTILFLDEIHRFNKAQQDALLPHVESG 147

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATT-RVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
            L                    TLI ATT       NP        + L     ED++ +
Sbjct: 148 LL--------------------TLIGATTENPSFEVNPALRSRARTLVLEPLSQEDVRGL 187

Query: 192 VQRGAK----LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH--AKTITREI 245
           ++R       L G+A   EA   +A       R+A    RR     EVA   A  +T E 
Sbjct: 188 LERALADPRGLPGVAAQPEALDLLA-------RLADGDARRALGTLEVAATLANPVTSEA 240

Query: 246 ADAALLRL--AIDKMGFDQLDL 265
              A  R   A+DK G D  +L
Sbjct: 241 VREAFGRHLPAMDKNGEDFYNL 262


>gi|330981392|gb|EGH79495.1| recombination factor protein RarA [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 440

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 70/136 (51%), Gaps = 11/136 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LR   L+E+ GQ    ++ K   EA +    AL  ++F GPPG+GKTTLA+++A+    +
Sbjct: 17  LRANNLDEYVGQEHVLAHGKPLREALEQ--GALHSMIFWGPPGVGKTTLAKLLAKVSDAH 74

Query: 82  FRSTSGPVIAKAGDLAALLT-------NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F + S  V+A   ++   +            R +LF+DE+HR +   ++   P +ED  L
Sbjct: 75  FETVSA-VLAGVKEIRQAVEVARQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVEDGTL 133

Query: 135 DLMVGEGPSARSVKIN 150
            + +G      S ++N
Sbjct: 134 -IFIGATTENPSFELN 148


>gi|308177513|ref|YP_003916919.1| replication-associated recombination protein A [Arthrobacter
           arilaitensis Re117]
 gi|307744976|emb|CBT75948.1| replication-associated recombination protein A [Arthrobacter
           arilaitensis Re117]
          Length = 468

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 67/134 (50%), Gaps = 13/134 (9%)

Query: 22  LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP++L+E  GQ       S L+   E  +        V+  GPPG+GKTT+A V+AR  
Sbjct: 31  MRPKSLDELVGQQHLLGPGSPLRQLAENPETGLAGPASVILYGPPGIGKTTIAHVIARAT 90

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNL-EDRD------VLFIDEIHRLSIIVEEILYPAMED 131
              F   S  + A   D+  ++    +DRD      VLF+DEIHR +   ++ L P +E+
Sbjct: 91  DRKFVELSA-ITAGVKDVRRVIEQAKDDRDLRGVTTVLFLDEIHRFNKAQQDALLPGVEN 149

Query: 132 FQLDLMVG--EGPS 143
             + L+    E PS
Sbjct: 150 RVVVLVAATTENPS 163


>gi|291320002|ref|YP_003515260.1| AAA family ATPase [Mycoplasma agalactiae]
 gi|290752331|emb|CBH40302.1| ATPase, AAA family [Mycoplasma agalactiae]
          Length = 404

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 56/109 (51%), Gaps = 9/109 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+TL++  GQ      LK       AR       +F G  G GKT+ A  +A +LG+ 
Sbjct: 8   LRPKTLDDIIGQKSVVELLKRV-----ARDRIYSSFIFFGESGTGKTSAAVALANDLGLK 62

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           +   +  V +KA     L+  L D DVL IDEIHRL+   ++IL   +E
Sbjct: 63  YDYFNASVNSKA----ELIKMLADNDVLIIDEIHRLNKDKQDILLSYLE 107


>gi|255262261|ref|ZP_05341603.1| recombination factor protein RarA [Thalassiobium sp. R2A62]
 gi|255104596|gb|EET47270.1| recombination factor protein RarA [Thalassiobium sp. R2A62]
          Length = 464

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 72/137 (52%), Gaps = 14/137 (10%)

Query: 22  LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP++L E  GQ +     + L V + +     ++L  ++F GPPG+GKTT+A+++A E 
Sbjct: 52  LRPKSLGEVIGQDQVLGPEAPLGVMLAS-----QSLSSLIFWGPPGVGKTTIARLLADET 106

Query: 79  GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
            ++F   S      P + K  + A +        +LF+DEIHR +   ++   P MED  
Sbjct: 107 DLHFIQISAIFTGVPELRKVFEAAKIRRQNGKGTLLFVDEIHRFNKAQQDGFLPHMEDGT 166

Query: 134 LDLMVGEGPSARSVKIN 150
           + L+VG      S ++N
Sbjct: 167 I-LLVGATTENPSFELN 182


>gi|29833388|ref|NP_828022.1| recombination factor protein RarA [Streptomyces avermitilis
           MA-4680]
 gi|29610511|dbj|BAC74557.1| putative ATP/GTP-binding protein [Streptomyces avermitilis MA-4680]
          Length = 453

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 62/127 (48%), Gaps = 11/127 (8%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL+E  GQ   ++  S L+  +            V+  GPPG GKTTLA VV++  
Sbjct: 29  MRPRTLDEVVGQQHLLKPGSPLRRLVGEGSGGPAGPSSVILWGPPGTGKTTLAYVVSKAT 88

Query: 79  GVNFRSTSGPVIAKAGDLAALLT-------NLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
              F   S  + A   ++ A++              VLF+DEIHR S   ++ L PA+E+
Sbjct: 89  NKRFVELSA-ITAGVKEVRAVIDGARRATGGFGKETVLFLDEIHRFSKAQQDSLLPAVEN 147

Query: 132 FQLDLMV 138
             + L+ 
Sbjct: 148 RWVTLIA 154


>gi|114562972|ref|YP_750485.1| recombination factor protein RarA [Shewanella frigidimarina NCIMB
           400]
 gi|114334265|gb|ABI71647.1| Recombination protein MgsA [Shewanella frigidimarina NCIMB 400]
          Length = 443

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 102/232 (43%), Gaps = 26/232 (11%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKA-RAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           +RPR + E+ GQ       K   +A +A RA ++   L  GPPG GKTTLA+++A     
Sbjct: 19  MRPRDISEYIGQAHLLGEGKPLRKALEANRAHSM---LLWGPPGTGKTTLAELIAHYANA 75

Query: 81  NFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +    S  V +   D+ A +   +        R +LF+DE+HR +   ++   P +ED  
Sbjct: 76  HVERISA-VTSGVKDIRAAIEQAKAIAQSRGQRTLLFVDEVHRFNKSQQDAFLPFIEDGT 134

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           + + +G      S +IN      + +  RV L+     D   + +     ++E       
Sbjct: 135 V-IFIGATTENPSFEIN----NALLSRARVYLINRLSSDEINLIVTQALVDVE------- 182

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           RG     L +  + A ++A  S G  R A  LL  + D   VA A   T E+
Sbjct: 183 RGLGKRQLILPADVAKQLADISDGDARKALNLLELMSDL--VADAGAFTTEM 232


>gi|83312581|ref|YP_422845.1| recombination factor protein RarA [Magnetospirillum magneticum
           AMB-1]
 gi|82947422|dbj|BAE52286.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [Magnetospirillum magneticum AMB-1]
          Length = 430

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 45/138 (32%), Positives = 70/138 (50%), Gaps = 16/138 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP TLEE  GQ   + A + L   + A +     L  V+  GPPG GKTT+A+++A  +
Sbjct: 18  LRPATLEEVVGQSHLLAATAPLGRMLAAGR-----LASVILWGPPGCGKTTIARLLAERV 72

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAMEDF 132
           G+ F   S  V +   DL  +    E R       +LF+DEIHR +   ++   P +E+ 
Sbjct: 73  GLYFEPLSA-VFSGVADLRKVFDAAEKRKQTGRSTLLFVDEIHRFNRAQQDGFLPYVENG 131

Query: 133 QLDLMVGEGPSARSVKIN 150
            + ++VG      S ++N
Sbjct: 132 TV-VLVGATTENPSFELN 148


>gi|290961834|ref|YP_003493016.1| ATP/GTP binding protein [Streptomyces scabiei 87.22]
 gi|260651360|emb|CBG74482.1| conserved ATP/GTP binding protein [Streptomyces scabiei 87.22]
          Length = 451

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 63/127 (49%), Gaps = 11/127 (8%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL+E  GQ   ++  S L+  +  +         V+  GPPG GKTTLA VV++  
Sbjct: 27  MRPRTLDEVVGQQHLLKPGSPLRRLVGESGGGPAGPSSVILWGPPGTGKTTLAYVVSKAT 86

Query: 79  GVNFRSTSGPVIAKAGDLAALLT-------NLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
              F   S  + A   ++ A++              VLF+DEIHR S   ++ L PA+E+
Sbjct: 87  NKRFVELSA-ITAGVKEVRAVIEGARRATGGFGKETVLFLDEIHRFSKAQQDSLLPAVEN 145

Query: 132 FQLDLMV 138
             + L+ 
Sbjct: 146 RWVTLIA 152


>gi|297198342|ref|ZP_06915739.1| recombination factor protein RarA [Streptomyces sviceus ATCC 29083]
 gi|197714396|gb|EDY58430.1| recombination factor protein RarA [Streptomyces sviceus ATCC 29083]
          Length = 451

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 62/127 (48%), Gaps = 11/127 (8%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL+E  GQ   ++  S L+  +            V+  GPPG GKTTLA VV++  
Sbjct: 27  MRPRTLDEVVGQQHLLKPGSPLRRLVGEGSGGPAGPSSVILWGPPGTGKTTLAYVVSKAT 86

Query: 79  GVNFRSTSGPVIAKAGDLAALLT-------NLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
              F   S  + A   ++ A++              VLF+DEIHR S   ++ L PA+E+
Sbjct: 87  NKRFVELSA-ITAGVKEVRAVIEGARRATGGFGKETVLFLDEIHRFSKAQQDSLLPAVEN 145

Query: 132 FQLDLMV 138
             + L+ 
Sbjct: 146 RWVTLIA 152


>gi|289434794|ref|YP_003464666.1| ATPase, AAA family [Listeria seeligeri serovar 1/2b str. SLCC3954]
 gi|289171038|emb|CBH27580.1| ATPase, AAA family [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 427

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 64/130 (49%), Gaps = 4/130 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP++L+E  GQ       K+     KA+   L  ++  GPPG+GKT++A  +A      
Sbjct: 10  MRPKSLDEIVGQTHLVGKDKIIYRMVKAKQ--LSSMILYGPPGIGKTSIASAIAGSTKYA 67

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR+ +     K   ++ A    +    +L +DE+HRL    ++ L P +E   + +++G 
Sbjct: 68  FRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQDFLLPLLESGAI-ILIGA 126

Query: 141 GPSARSVKIN 150
             S   + IN
Sbjct: 127 TTSNPYIAIN 136


>gi|110638794|ref|YP_679003.1| recombination factor protein RarA [Cytophaga hutchinsonii ATCC
           33406]
 gi|110281475|gb|ABG59661.1| ATPase, AAA family [Cytophaga hutchinsonii ATCC 33406]
          Length = 420

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 73/139 (52%), Gaps = 13/139 (9%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP  L++  GQ          + F+E  K     +  ++  GPPG+GKTTLAQ++A+ +
Sbjct: 10  MRPVLLQDVYGQQHLIGEGMVFRRFVEEGK-----IPSMILWGPPGVGKTTLAQLLAKTV 64

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           G+ F + S  + +   ++  ++ N +   + VLFIDEIHR S   ++ L  A+E   + L
Sbjct: 65  GLPFYTLSA-ISSGVKEVREVIANAQTDGKAVLFIDEIHRFSKSQQDALLGAVEKGTIQL 123

Query: 137 M--VGEGPSARSVKINLSR 153
           +    E PS   +   LSR
Sbjct: 124 IGATTENPSFEVIPALLSR 142


>gi|303237626|ref|ZP_07324186.1| recombination factor protein RarA [Prevotella disiens FB035-09AN]
 gi|302482078|gb|EFL45113.1| recombination factor protein RarA [Prevotella disiens FB035-09AN]
          Length = 424

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 70/141 (49%), Gaps = 12/141 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRTL+E+ GQ        V      +R   +   +  G PG+GKTTLAQ++A +L   
Sbjct: 8   MRPRTLDEYVGQSHLVGKGAVLRNMIDSRH--ISSFILWGSPGVGKTTLAQIIANKLETP 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F + S  + +   D+ +++   +          +LFIDEIHR S   ++ L  A+E   +
Sbjct: 66  FYTLSA-IASGVKDVRSVIEKAKSNRFFNAPSPILFIDEIHRFSKSQQDSLLGAVEKGVV 124

Query: 135 DLM--VGEGPSARSVKINLSR 153
            L+    E PS   ++  LSR
Sbjct: 125 TLIGATTENPSFEVIRPLLSR 145


>gi|296139682|ref|YP_003646925.1| ATPase AAA [Tsukamurella paurometabola DSM 20162]
 gi|296027816|gb|ADG78586.1| AAA ATPase central domain protein [Tsukamurella paurometabola DSM
           20162]
          Length = 456

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 76/143 (53%), Gaps = 17/143 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPR+L+E  GQ   +   + L+  IE A A +     V+  GPPG GKTT+A +++   
Sbjct: 40  MRPRSLDEVLGQEHLLGPGTPLRRLIEGAGAAS-----VILYGPPGTGKTTIASLISGAT 94

Query: 79  GVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           G  F + S  + A   D+ A++        ++++ VLFIDE+HR S   ++ L  A+E+ 
Sbjct: 95  GRRFEALSA-LSAGVKDVRAVIEMARRRLLVDEQTVLFIDEVHRFSKAQQDALLAAVENR 153

Query: 133 QLDLMVG--EGPSARSVKINLSR 153
            + L+    E PS   V   LSR
Sbjct: 154 VVLLVAATTENPSFSVVSPLLSR 176


>gi|302380490|ref|ZP_07268955.1| recombination factor protein RarA [Finegoldia magna ACS-171-V-Col3]
 gi|302311433|gb|EFK93449.1| recombination factor protein RarA [Finegoldia magna ACS-171-V-Col3]
          Length = 431

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 73/145 (50%), Gaps = 12/145 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP++L+++ GQ       K+     KA  + +  ++F GPPG GKTTLA++++ +    
Sbjct: 22  LRPKSLDKYFGQSHVVGEGKLLNRLIKA--DKIPSMIFYGPPGTGKTTLAEIISNQTNSL 79

Query: 82  FRSTSGPVIAKAGDLAALL----TNL---EDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F   S  +     D+  ++    TNL     + VLFIDEIHR +   ++ L   +ED  +
Sbjct: 80  FERLSA-ISNGVKDIREVISTAKTNLSMYNKKTVLFIDEIHRFNKSQQDALLGYVEDGTI 138

Query: 135 DLM--VGEGPSARSVKINLSRFTLI 157
            L+    E P     K  LSR  +I
Sbjct: 139 TLIGATTENPFFEVNKALLSRCQII 163


>gi|308049686|ref|YP_003913252.1| Recombination protein MgsA [Ferrimonas balearica DSM 9799]
 gi|307631876|gb|ADN76178.1| Recombination protein MgsA [Ferrimonas balearica DSM 9799]
          Length = 442

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 72/141 (51%), Gaps = 21/141 (14%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP TL+++ GQ   +     L+  +EA +A +     +L  GPPG GKTTLA++VAR  
Sbjct: 19  MRPETLDDYVGQEHLLGPGKPLRAALEAGRAHS-----MLLWGPPGTGKTTLAELVARYA 73

Query: 79  GVNFRS----TSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
             +       TSG       I KA D+AA       + +LF+DE+HR +   ++   P +
Sbjct: 74  NAHVERISAVTSGVKEIRAAIDKAKDIAAAHGR---QTLLFVDEVHRFNKSQQDAFLPHI 130

Query: 130 EDFQLDLMVGEGPSARSVKIN 150
           ED  + + +G      S ++N
Sbjct: 131 EDGTV-IFIGATTENPSFEVN 150


>gi|238879198|gb|EEQ42836.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 678

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 70/134 (52%), Gaps = 18/134 (13%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP++L++F GQ   V     L+  I+A     + +   L  G PG+GKT+LA+++A+  
Sbjct: 170 LRPKSLDDFFGQEKLVGENGALRNIIQA-----DIIPSFLLWGVPGIGKTSLARIIAKTT 224

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131
              F   SG + + A  L  +    E+       R +LF+DEIHR +  V+++L P +E 
Sbjct: 225 SCKFVELSG-IDSNAKRLKEVFVQAENHKNLSGQRTILFLDEIHRFNKAVQDLLLPVIEK 283

Query: 132 FQLDLM--VGEGPS 143
             L ++    E PS
Sbjct: 284 GTLTVIGATTENPS 297


>gi|56695429|ref|YP_165777.1| recombination factor protein RarA [Ruegeria pomeroyi DSS-3]
 gi|56677166|gb|AAV93832.1| ATPase, AAA family [Ruegeria pomeroyi DSS-3]
          Length = 438

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 72/137 (52%), Gaps = 14/137 (10%)

Query: 22  LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP++L E  GQ +     + L V + +      +L  ++F GPPG+GKTT+A+++A+E 
Sbjct: 25  LRPQSLGEVIGQQQVLGPEAPLGVMLASG-----SLSSLVFWGPPGVGKTTIARLLAQET 79

Query: 79  GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
            ++F   S      P + K  + A +        +LF+DEIHR +   ++   P MED  
Sbjct: 80  DLHFVQISAIFTGVPDLKKVFEAARIRRGNGQGTLLFVDEIHRFNKAQQDGFLPHMEDGT 139

Query: 134 LDLMVGEGPSARSVKIN 150
           + L+VG      S ++N
Sbjct: 140 I-LLVGATTENPSFELN 155


>gi|295396913|ref|ZP_06807037.1| AAA family ATPase [Aerococcus viridans ATCC 11563]
 gi|294974847|gb|EFG50550.1| AAA family ATPase [Aerococcus viridans ATCC 11563]
          Length = 423

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 55/111 (49%), Gaps = 5/111 (4%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR++EE  GQ       K+     KA    L  ++  GPPG+GKT++A  +A      
Sbjct: 11  MRPRSIEEVVGQQHLVGEGKIIFRMVKAMQ--LSSMILYGPPGIGKTSIASAIAGSTKYA 68

Query: 82  FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           FR  +    +K  DL A++         VL +DEIHRL    ++ L P +E
Sbjct: 69  FRKLNAATDSKK-DLQAVVEEAKFSGGIVLLLDEIHRLDKTKQDFLLPHLE 118


>gi|288549436|ref|ZP_05967088.2| hypothetical protein ENTCAN_05464 [Enterobacter cancerogenus ATCC
           35316]
 gi|288319085|gb|EFC58023.1| replication-associated recombination protein A [Enterobacter
           cancerogenus ATCC 35316]
          Length = 428

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 98/226 (43%), Gaps = 33/226 (14%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP  L ++ GQ   + A   L   IEA       L  ++  GPPG GKTTLA+V+AR  
Sbjct: 1   MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 55

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             +       TSG   I +A + A    N   R +LF+DE+HR +   ++   P +ED  
Sbjct: 56  NADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 115

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           +   +G      S ++N    + + +  RV LL +           L   +IE + T   
Sbjct: 116 I-FFIGATTENPSFELN----SALLSRARVYLLKS-----------LTTEDIEHVLTQAM 159

Query: 194 ----RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
               RG     + + DE    IA +  G  R A   L  + D AEV
Sbjct: 160 SDKARGYGGQDIVLPDETRLAIAQQVNGDARRALNTLEMMADMAEV 205


>gi|281425637|ref|ZP_06256550.1| ATPase, AAA family [Prevotella oris F0302]
 gi|281400224|gb|EFB31055.1| ATPase, AAA family [Prevotella oris F0302]
          Length = 423

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 74/147 (50%), Gaps = 18/147 (12%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP +L+E+ GQ         L+  I+A +     +   +  GPPG+GKTTLAQ++A +L
Sbjct: 9   MRPHSLDEYVGQQHLVGRGVVLRKMIDAGR-----ISSFILWGPPGVGKTTLAQIIANKL 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V +   D+  ++   ++         +LFIDEIHR S   ++ L  A+E 
Sbjct: 64  ETPFYTLSA-VTSGVKDVRDVIEKAKNNRFFNTASPILFIDEIHRFSKSQQDSLLGAVER 122

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156
             + L+    E PS   ++  LSR  L
Sbjct: 123 GVVTLIGATTENPSFEVIRPLLSRCQL 149


>gi|320093742|ref|ZP_08025601.1| AAA family ATPase [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319979327|gb|EFW10818.1| AAA family ATPase [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 447

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 67/134 (50%), Gaps = 13/134 (9%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP  +EE  GQ   +   + L+  +E A   + A+  V+  GPPG GKTTLA +VAR  
Sbjct: 27  MRPARIEEVVGQDHLLGEGAPLRRLLEPASGASVAVSSVVLWGPPGTGKTTLAYLVARTT 86

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131
              F   S  V +   D+  ++     R        VLF+DE+HR S   ++ L PA+E+
Sbjct: 87  SRRFEELSA-VSSGVRDIRDVVGGARRRLAAGGGETVLFVDEVHRFSKSQQDALLPAVEN 145

Query: 132 FQLDLMVG--EGPS 143
             + L+    E PS
Sbjct: 146 RWVVLVAATTENPS 159


>gi|169824318|ref|YP_001691929.1| ATPase [Finegoldia magna ATCC 29328]
 gi|167831123|dbj|BAG08039.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [Finegoldia magna ATCC 29328]
          Length = 431

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 73/145 (50%), Gaps = 12/145 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP++L+++ GQ       K+     KA  + +  ++F GPPG GKTTLA++++ +    
Sbjct: 22  LRPKSLDKYFGQSHVVGEGKLLNRLIKA--DKIPSMIFYGPPGTGKTTLAEIISNQTNSL 79

Query: 82  FRSTSGPVIAKAGDLAALL----TNL---EDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F   S  +     D+  ++    TNL     + VLFIDEIHR +   ++ L   +ED  +
Sbjct: 80  FERLSA-ISNGVKDIREVISTAKTNLSMYNKKTVLFIDEIHRFNKSQQDALLGYVEDGTI 138

Query: 135 DLM--VGEGPSARSVKINLSRFTLI 157
            L+    E P     K  LSR  +I
Sbjct: 139 TLIGATTENPFFEVNKALLSRCQII 163


>gi|21220007|ref|NP_625786.1| recombination factor protein RarA [Streptomyces coelicolor A3(2)]
 gi|256788895|ref|ZP_05527326.1| recombination factor protein RarA [Streptomyces lividans TK24]
 gi|289772781|ref|ZP_06532159.1| recombination factor protein RarA [Streptomyces lividans TK24]
 gi|8249965|emb|CAB93386.1| conserved ATP/GTP binding protein [Streptomyces coelicolor A3(2)]
 gi|289702980|gb|EFD70409.1| recombination factor protein RarA [Streptomyces lividans TK24]
          Length = 451

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 63/127 (49%), Gaps = 11/127 (8%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL+E  GQ   ++  S L+  +    +       V+  GPPG GKTTLA VV++  
Sbjct: 27  MRPRTLDEVVGQQHLLKPGSPLRRLVGEGASGPAGPSSVILWGPPGTGKTTLAYVVSKAT 86

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAMED 131
              F   S  + A   ++ A++              VLF+DEIHR S   ++ L PA+E+
Sbjct: 87  NKRFVELSA-ITAGVKEVRAVIDGARRAVGGYGKETVLFLDEIHRFSKAQQDSLLPAVEN 145

Query: 132 FQLDLMV 138
             + L+ 
Sbjct: 146 RWVTLIA 152


>gi|68468917|ref|XP_721517.1| hypothetical protein CaO19.3019 [Candida albicans SC5314]
 gi|68469463|ref|XP_721246.1| hypothetical protein CaO19.10537 [Candida albicans SC5314]
 gi|46443155|gb|EAL02439.1| hypothetical protein CaO19.10537 [Candida albicans SC5314]
 gi|46443437|gb|EAL02719.1| hypothetical protein CaO19.3019 [Candida albicans SC5314]
          Length = 678

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 70/134 (52%), Gaps = 18/134 (13%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP++L++F GQ   V     L+  I+A     + +   L  G PG+GKT+LA+++A+  
Sbjct: 170 LRPKSLDDFFGQEKLVGENGALRNIIQA-----DIIPSFLLWGVPGIGKTSLARIIAKTT 224

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131
              F   SG + + A  L  +    E+       R +LF+DEIHR +  V+++L P +E 
Sbjct: 225 SCKFVELSG-IDSNAKRLKEVFVQAENHKNLSGQRTILFLDEIHRFNKAVQDLLLPVIEK 283

Query: 132 FQLDLM--VGEGPS 143
             L ++    E PS
Sbjct: 284 GTLTVIGATTENPS 297


>gi|294782754|ref|ZP_06748080.1| ATPase, AAA family [Fusobacterium sp. 1_1_41FAA]
 gi|294481395|gb|EFG29170.1| ATPase, AAA family [Fusobacterium sp. 1_1_41FAA]
          Length = 407

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 104/241 (43%), Gaps = 53/241 (21%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKAR----AEALDHVLFVGPPGLGKTTLAQVVARE 77
           LRP+ L++F GQ       K+  +    R      AL + +F GPPG GK++L ++++  
Sbjct: 18  LRPKNLDDFVGQE------KLLGKDGVIRRLILNSALSNSIFYGPPGCGKSSLGEIISNT 71

Query: 78  LGVNFRSTSGPVIAKAGDLAALLT----NLE---DRDVLFIDEIHRLSIIVEEILYPAME 130
           L  NF   +    A   D+  ++     N+E    R +LF+DEIHR +   ++ L    E
Sbjct: 72  LDCNFEKLNA-TTASVSDIRTVVETAKRNIELYNKRTILFLDEIHRFNKNQQDALLSYTE 130

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEI---- 185
           D  L                    TLI ATT      NP  +    +  R+  +E     
Sbjct: 131 DGTL--------------------TLIGATTE-----NPYYNINNALLSRVMVFEFKALT 165

Query: 186 -EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            ED+  ++ +G     ++++D+    I   ++G  RIA   L  V  +  + H++    E
Sbjct: 166 NEDISKLIDKGLNFLNISMSDKIKEIIIDIAQGDSRIA---LNYVEMYNNI-HSQMTEDE 221

Query: 245 I 245
           I
Sbjct: 222 I 222


>gi|302561719|ref|ZP_07314061.1| AAA family ATPase [Streptomyces griseoflavus Tu4000]
 gi|302479337|gb|EFL42430.1| AAA family ATPase [Streptomyces griseoflavus Tu4000]
          Length = 451

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 63/127 (49%), Gaps = 11/127 (8%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL+E  GQ   ++  S L+  +    +       V+  GPPG GKTTLA VV++  
Sbjct: 27  MRPRTLDEVVGQQHLLKPGSPLRRLVGEGASGPAGPSSVILWGPPGTGKTTLAYVVSKAT 86

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAMED 131
              F   S  + A   ++ A++              VLF+DEIHR S   ++ L PA+E+
Sbjct: 87  NKRFVELSA-ITAGVKEVRAVIDGARRASGGYGQETVLFLDEIHRFSKAQQDSLLPAVEN 145

Query: 132 FQLDLMV 138
             + L+ 
Sbjct: 146 RWVTLIA 152


>gi|294648646|ref|ZP_06726108.1| recombination factor protein RarA [Acinetobacter haemolyticus ATCC
           19194]
 gi|292825436|gb|EFF84177.1| recombination factor protein RarA [Acinetobacter haemolyticus ATCC
           19194]
          Length = 426

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 64/195 (32%), Positives = 95/195 (48%), Gaps = 36/195 (18%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPR L E  GQ     +   L+  I+        L  ++F GPPG+GKTT+A ++A+ +
Sbjct: 13  LRPRDLSEIIGQDHLLGDNAPLRQMIDQGH-----LPSIIFWGPPGVGKTTIALLLAQAV 67

Query: 79  GVNFRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
              F S S           VIA++GD   LLT      V+FIDEIHR +   ++ L  A+
Sbjct: 68  DRPFISLSALNTGVKELREVIAESGD---LLT-----PVVFIDEIHRFNKSQQDALLNAV 119

Query: 130 EDFQLDLM--VGEGPSARSVKINLSR---FTL--IAATTRVGLLTNPLQ-DRFGIPIRLN 181
           E  ++ L+    E PS       LSR   +TL  + A     LL   +Q D+F   ++  
Sbjct: 120 EKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDAEAIQTLLNKAIQTDKF---LKER 176

Query: 182 FYEIEDLKTIVQRGA 196
           F +IE+   ++Q  A
Sbjct: 177 FIQIEEYDALIQFAA 191


>gi|218781932|ref|YP_002433250.1| ATPase AAA [Desulfatibacillum alkenivorans AK-01]
 gi|218763316|gb|ACL05782.1| AAA ATPase central domain protein [Desulfatibacillum alkenivorans
           AK-01]
          Length = 441

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 97/217 (44%), Gaps = 40/217 (18%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRTL+EF GQ        +   A ++  + L  ++F GPPG GKTTLA+++A      
Sbjct: 16  MRPRTLDEFIGQEAVVGEGGIVRRAVES--DHLFSMIFWGPPGCGKTTLARIMANASQSY 73

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F   S  V +    +  ++   +DR        +LF+DEIHR +   ++   P +E   +
Sbjct: 74  FMQISA-VGSGVKQIREVVEEAKDRRNFHAQKSILFVDEIHRFNKAQQDGFLPHVESGII 132

Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            L+    E PS   +   LSR  ++        +  PL               +D+KT++
Sbjct: 133 TLIGATTENPSFEVISPLLSRCRVV--------VLKPLSS-------------DDMKTVI 171

Query: 193 Q-------RGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
           Q       +G  +  +++ +EA   +A  + G  R A
Sbjct: 172 QNAVQDEEKGLGMYDVSLEEEALENLAQGADGDARKA 208


>gi|119716631|ref|YP_923596.1| recombination factor protein RarA [Nocardioides sp. JS614]
 gi|119537292|gb|ABL81909.1| Recombination protein MgsA [Nocardioides sp. JS614]
          Length = 456

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 69/141 (48%), Gaps = 14/141 (9%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGP 62
           G LS N          +RPRTL+E  GQ +   A S L+  +E  ++ +     +L  GP
Sbjct: 18  GSLSANTHASAPLAVRMRPRTLDELVGQAQLRAAGSPLRRLVEGDQSMS-----LLLWGP 72

Query: 63  PGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLA-ALLTNLEDRDVLFIDEIHR 116
           PG GKTT+A +V+++    F   S        +  A D A A L       VLF+DE+HR
Sbjct: 73  PGTGKTTIAAIVSQQTDRRFVEVSAVSAGVKEVRAAIDAARAELAGGGRETVLFVDEVHR 132

Query: 117 LSIIVEEILYPAMEDFQLDLM 137
            S   ++ L P +E+  + L+
Sbjct: 133 FSKAQQDALLPGVENRWVTLI 153


>gi|303234078|ref|ZP_07320727.1| recombination factor protein RarA [Finegoldia magna BVS033A4]
 gi|302495003|gb|EFL54760.1| recombination factor protein RarA [Finegoldia magna BVS033A4]
          Length = 431

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 73/145 (50%), Gaps = 12/145 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP++L+++ GQ       K+     KA  + +  ++F GPPG GKTTLA++++ +    
Sbjct: 22  LRPKSLDKYFGQSHVVGEGKLLNRLIKA--DKIPSMIFYGPPGTGKTTLAEIISNQTNSL 79

Query: 82  FRSTSGPVIAKAGDLAALL----TNL---EDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F   S  +     D+  ++    TNL     + VLFIDEIHR +   ++ L   +ED  +
Sbjct: 80  FERLSA-ISNGVKDIREVISTAKTNLSMYNKKTVLFIDEIHRFNKSQQDALLGYVEDGTI 138

Query: 135 DLM--VGEGPSARSVKINLSRFTLI 157
            L+    E P     K  LSR  +I
Sbjct: 139 TLIGATTENPFFEVNKALLSRCQII 163


>gi|254509759|ref|ZP_05121826.1| ATPase, AAA family [Rhodobacteraceae bacterium KLH11]
 gi|221533470|gb|EEE36458.1| ATPase, AAA family [Rhodobacteraceae bacterium KLH11]
          Length = 437

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 81/155 (52%), Gaps = 18/155 (11%)

Query: 22  LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP++L +  GQ +     + L V + +      +L  ++F GPPG+GKTT+A+++A+E 
Sbjct: 24  LRPQSLGDVIGQQQVLGPDAPLGVMLASG-----SLSSLIFWGPPGVGKTTIARLLAQET 78

Query: 79  GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
            ++F   S      P + K  + A +        +LF+DEIHR +   ++   P MED  
Sbjct: 79  DLHFVQISAIFTGVPDLKKVFEAAKIRRQNGQGTLLFVDEIHRFNKAQQDGFLPHMEDGT 138

Query: 134 LDLMVGEGPSARSVKIN---LSRFTLIAATTRVGL 165
           + L+VG      S ++N   LSR + +    R+GL
Sbjct: 139 I-LLVGATTENPSFELNAAVLSR-SQVLVLERLGL 171


>gi|313107649|ref|ZP_07793832.1| putative ATPase associated with chromosome architecture
           [Pseudomonas aeruginosa 39016]
 gi|310880334|gb|EFQ38928.1| putative ATPase associated with chromosome architecture
           [Pseudomonas aeruginosa 39016]
          Length = 441

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 71/135 (52%), Gaps = 9/135 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP  L+E+ GQ    +  K   EA +    AL  ++F GPPG+GKTTLA+++A+    +
Sbjct: 17  LRPANLDEYVGQEHLLARGKPLREALEQ--GALHSMIFWGPPGVGKTTLARLLAQVSDAH 74

Query: 82  FRSTSGPV-----IAKAGDLAAL-LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F + S  +     I +A ++A         R +LF+DE+HR +   ++   P +ED  L 
Sbjct: 75  FETISAVLSGVKEIRQAVEVAKQHAAQYGRRTILFVDEVHRFNKSQQDAFLPYVEDGTL- 133

Query: 136 LMVGEGPSARSVKIN 150
           + +G      S ++N
Sbjct: 134 IFIGATTENPSFELN 148


>gi|15597809|ref|NP_251303.1| recombination factor protein RarA [Pseudomonas aeruginosa PAO1]
 gi|107102135|ref|ZP_01366053.1| hypothetical protein PaerPA_01003185 [Pseudomonas aeruginosa PACS2]
 gi|218891226|ref|YP_002440092.1| recombination factor protein RarA [Pseudomonas aeruginosa LESB58]
 gi|254235599|ref|ZP_04928922.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|254241046|ref|ZP_04934368.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|296388928|ref|ZP_06878403.1| recombination factor protein RarA [Pseudomonas aeruginosa PAb1]
 gi|9948679|gb|AAG06001.1|AE004690_1 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
 gi|126167530|gb|EAZ53041.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|126194424|gb|EAZ58487.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|218771451|emb|CAW27218.1| putative ATPase associated with chromosome architecture
           [Pseudomonas aeruginosa LESB58]
          Length = 441

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 71/135 (52%), Gaps = 9/135 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP  L+E+ GQ    +  K   EA +    AL  ++F GPPG+GKTTLA+++A+    +
Sbjct: 17  LRPANLDEYVGQEHLLARGKPLREALEQ--GALHSMIFWGPPGVGKTTLARLLAQVSDAH 74

Query: 82  FRSTSGPV-----IAKAGDLAAL-LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F + S  +     I +A ++A         R +LF+DE+HR +   ++   P +ED  L 
Sbjct: 75  FETISAVLSGVKEIRQAVEVAKQHAAQYGRRTILFVDEVHRFNKSQQDAFLPYVEDGTL- 133

Query: 136 LMVGEGPSARSVKIN 150
           + +G      S ++N
Sbjct: 134 IFIGATTENPSFELN 148


>gi|218282978|ref|ZP_03489080.1| hypothetical protein EUBIFOR_01666 [Eubacterium biforme DSM 3989]
 gi|218216172|gb|EEC89710.1| hypothetical protein EUBIFOR_01666 [Eubacterium biforme DSM 3989]
          Length = 453

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 79/156 (50%), Gaps = 8/156 (5%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG-- 79
           +RP TL+E+ GQ +  +   +  +  +   + +  ++F GPPG+GKTTLA+++A +    
Sbjct: 20  MRPETLDEYVGQKQLVAKGNLLWQMIEH--DQVTSMIFWGPPGVGKTTLARIIAHQTKSY 77

Query: 80  -VNFRSTSGPV--IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
            V+F + +  +  I +    A     L  + +LF+DEIHR +   ++   P +E   + +
Sbjct: 78  FVDFSAVTSGIKEIKEVMKQADTRRALGQKTILFVDEIHRFNKAQQDAFLPYVEKGSI-I 136

Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           ++G      S +IN +  +         L T+ L+D
Sbjct: 137 LIGATTENPSFEINSALLSRCRVFVLNSLNTDDLKD 172


>gi|296327395|ref|ZP_06869944.1| AAA family ATPase [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
 gi|296155510|gb|EFG96278.1| AAA family ATPase [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
          Length = 407

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 95/230 (41%), Gaps = 41/230 (17%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            L  +N    +     LRP++L++F GQ +      V           L + +F GPPG 
Sbjct: 2   NLFQKNYKNVEPLAYKLRPKSLDDFVGQEKLLGKDGVITRLI--LNSTLSNSIFYGPPGC 59

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLT----NLE---DRDVLFIDEIHRLS 118
           GK++L ++++  L  NF   +    A   D+  ++     N+E    R +LF+DEIHR +
Sbjct: 60  GKSSLGEIISNTLDCNFEKLNATT-ASVSDIRNIVETARRNIELYNKRTILFLDEIHRFN 118

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIP 177
              ++ L    ED  L                    TLI ATT      NP  +    + 
Sbjct: 119 KNQQDALLSYTEDGTL--------------------TLIGATTE-----NPYYNINNALL 153

Query: 178 IRLNFYEI-----EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
            R+  +E      ED+  ++ +G     + + D+    I   S+G  RIA
Sbjct: 154 SRVMVFEFKALTNEDILKLIDKGLNFLNICMGDKIKEIIVDISQGDSRIA 203


>gi|116050600|ref|YP_790581.1| recombination factor protein RarA [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115585821|gb|ABJ11836.1| putative ATPase associated with chromosome architecture
           [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 441

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 71/135 (52%), Gaps = 9/135 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP  L+E+ GQ    +  K   EA +    AL  ++F GPPG+GKTTLA+++A+    +
Sbjct: 17  LRPANLDEYVGQEHLLARGKPLREALEQ--GALHSMIFWGPPGVGKTTLARLLAQVSDAH 74

Query: 82  FRSTSGPV-----IAKAGDLAAL-LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F + S  +     I +A ++A         R +LF+DE+HR +   ++   P +ED  L 
Sbjct: 75  FETISAVLSGVKEIRQAVEVAKQHAAQYGRRTILFVDEVHRFNKSQQDAFLPYVEDGTL- 133

Query: 136 LMVGEGPSARSVKIN 150
           + +G      S ++N
Sbjct: 134 IFIGATTENPSFELN 148


>gi|294055980|ref|YP_003549638.1| AAA ATPase central domain protein [Coraliomargarita akajimensis DSM
           45221]
 gi|293615313|gb|ADE55468.1| AAA ATPase central domain protein [Coraliomargarita akajimensis DSM
           45221]
          Length = 450

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 62/117 (52%), Gaps = 15/117 (12%)

Query: 22  LRPRTLEEFTGQV----EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +RPR+L+E  GQ     E C   ++       RA+    ++F GPPG GKT++A+V+A E
Sbjct: 30  MRPRSLDEIIGQKHIVGEDCLLPRLI------RADNFGSLIFYGPPGCGKTSMAEVIAAE 83

Query: 78  LGVNFRSTSGPVIAKAGDLAALL----TNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
               F   +  V++   +L  +L         R +LFIDEIHR +   +++L P +E
Sbjct: 84  TSSKFVRINA-VLSNVAELREILRMARYESAARTILFIDEIHRFNKSQQDLLLPDVE 139


>gi|301062625|ref|ZP_07203257.1| ATPase, AAA family [delta proteobacterium NaphS2]
 gi|300443305|gb|EFK07438.1| ATPase, AAA family [delta proteobacterium NaphS2]
          Length = 741

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 62/117 (52%), Gaps = 10/117 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP TLEEF GQ    +  ++   A +A  + L  V+F GPPG GKTTLA V+A      
Sbjct: 16  MRPGTLEEFVGQSHIAAPGRLLRRAIQA--DQLSSVIFHGPPGTGKTTLAMVIANTTRSR 73

Query: 82  FRSTSGPVIAKAGDLAALLTN-------LEDRDVLFIDEIHRLSIIVEEILYPAMED 131
           F   +  V+    DL   +++        + R +LF+DEIHR +   ++ L P +E+
Sbjct: 74  FIPLNA-VLTGVKDLREAISDARRHREEEDRRTILFVDEIHRWNKSQQDALLPWVEN 129


>gi|224542189|ref|ZP_03682728.1| hypothetical protein CATMIT_01364 [Catenibacterium mitsuokai DSM
           15897]
 gi|224524880|gb|EEF93985.1| hypothetical protein CATMIT_01364 [Catenibacterium mitsuokai DSM
           15897]
          Length = 436

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 71/140 (50%), Gaps = 16/140 (11%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVF---IEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           S LRP  L+EF GQ       K+    IE      +++  ++F GPPG+GKTTLA+++A 
Sbjct: 15  SRLRPDNLDEFVGQTHLVGKGKILRRLIET-----DSISSMIFWGPPGVGKTTLARIIAS 69

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130
               +F   S  V +   ++  ++   E+      + +LF+DEIHR +   ++   P +E
Sbjct: 70  HTHSSFIDFSA-VTSGIKEIREVMKQAENNRVFGEKTILFVDEIHRFNKSQQDAFLPFVE 128

Query: 131 DFQLDLMVGEGPSARSVKIN 150
              + +++G      S +IN
Sbjct: 129 KGSI-ILIGATTENPSFEIN 147


>gi|148272987|ref|YP_001222548.1| recombination factor protein RarA [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147830917|emb|CAN01861.1| putative ATPase [Clavibacter michiganensis subsp. michiganensis
           NCPPB 382]
          Length = 473

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 46/133 (34%), Positives = 65/133 (48%), Gaps = 12/133 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAK--ARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +RPR L+E TGQ    +     +  A   A  +    ++  GPPG GKTTLAQ +A    
Sbjct: 19  MRPRGLDEVTGQRHLLTPGSPLVSLASDVAGEQGSVSIILWGPPGTGKTTLAQAIAHGSS 78

Query: 80  VNFRSTSGPVIAKAGDLAALLTN-LEDRD------VLFIDEIHRLSIIVEEILYPAMEDF 132
             F   S  V A   D+  ++   L DRD      VLF+DEIHR +   ++ L P +E+ 
Sbjct: 79  RRFVELSA-VTAGVRDVRQVMEKALSDRDLFGVSTVLFLDEIHRFTKAQQDALLPGVENG 137

Query: 133 QLDLMVG--EGPS 143
            + L+    E PS
Sbjct: 138 WVILIAATTENPS 150


>gi|189500549|ref|YP_001960019.1| recombination factor protein RarA [Chlorobium phaeobacteroides BS1]
 gi|189495990|gb|ACE04538.1| AAA ATPase central domain protein [Chlorobium phaeobacteroides BS1]
          Length = 445

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 84/170 (49%), Gaps = 28/170 (16%)

Query: 23  RPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           RPR L++  GQ   + A   L+ FI  A+ R   L  ++F GPPG GKTTLA++ A  L 
Sbjct: 32  RPRNLDDMYGQEHLIGAEGPLRKFI--AQGR---LPSMIFWGPPGSGKTTLAEICANSLD 86

Query: 80  VNFRSTSGP-----VIAKAGDLAALLTNLED-RDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             F S S        + K+ +LAA    L+  R +LFIDEIHR +   ++ L  A+E   
Sbjct: 87  FRFDSLSAVDAGVREVRKSLELAASAQRLDGLRTLLFIDEIHRFNKAQQDSLLHAIEQ-G 145

Query: 134 LDLMVGEGPSARSVKIN---LSRFTL----------IAATTRVGLLTNPL 170
           + +++G      S ++N   +SR  +          + A  R  L  +PL
Sbjct: 146 VVVLIGATTENPSFEVNAALMSRMQVYVLNALEDAALQAVVRCALAGDPL 195


>gi|71019167|ref|XP_759814.1| hypothetical protein UM03667.1 [Ustilago maydis 521]
 gi|46099612|gb|EAK84845.1| hypothetical protein UM03667.1 [Ustilago maydis 521]
          Length = 566

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 77/160 (48%), Gaps = 26/160 (16%)

Query: 22  LRPRTLEEFTGQVEACSN-LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG- 79
           +RP+TL+E+ GQ +  +  LK+ +   K     +  ++  GPPG GKTTLA+++A+    
Sbjct: 32  MRPQTLDEYVGQSDVVNGPLKMLLRQGK-----IPSMILWGPPGTGKTTLARLLAKSASS 86

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLED-----------------RDVLFIDEIHRLSIIVE 122
            +     GP   +  +++A  +   D                 R +LFIDEI R +   +
Sbjct: 87  TDSTCRQGPPPHRFVEISATNSGANDVKKILDEALHRLELTAQRTLLFIDEIQRFNRAQQ 146

Query: 123 EILYPAMEDFQLDLMVG--EGPSARSVKINLSRFTLIAAT 160
           ++L PA+E  Q+ L+    E PS R     +SR  +   T
Sbjct: 147 DVLLPAVEKGQIVLVAATTENPSFRLQSALISRMRVFVLT 186


>gi|331697349|ref|YP_004333588.1| AAA ATPase central domain-containing protein [Pseudonocardia
           dioxanivorans CB1190]
 gi|326952038|gb|AEA25735.1| AAA ATPase central domain protein [Pseudonocardia dioxanivorans
           CB1190]
          Length = 456

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 81/151 (53%), Gaps = 22/151 (14%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPR+L+E  GQ   +   + L+  +E       A   VL  GPPG GKTTLA+++AR  
Sbjct: 34  MRPRSLDEVVGQRHLLGPGAPLRRLLEGG-----APASVLLYGPPGTGKTTLARLMARSG 88

Query: 79  G--VNFRSTSGPVIAKAGDLAALLTNLE---DRD----VLFIDEIHRLSIIVEEILYPAM 129
           G   +F + S  + A   +L A++ +     DRD    VLFIDE+HR S   ++ L  A+
Sbjct: 89  GGSRHFVALSA-LSAGVKELRAVIEDARRRLDRDGRSTVLFIDEVHRFSKTQQDALLGAV 147

Query: 130 EDFQLDLMVG---EGPSARSVKINLSRFTLI 157
           ED +L L+V    E PS   V   LSR  ++
Sbjct: 148 ED-RLVLLVAATTENPSFSVVSPLLSRSLIL 177


>gi|152987484|ref|YP_001347959.1| recombination factor protein RarA [Pseudomonas aeruginosa PA7]
 gi|150962642|gb|ABR84667.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7]
          Length = 441

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 71/135 (52%), Gaps = 9/135 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP  L+E+ GQ    +  K   EA +    AL  ++F GPPG+GKTTLA+++A+    +
Sbjct: 17  LRPANLDEYVGQEHLLARGKPLREALEQ--GALHSMIFWGPPGVGKTTLARLLAQVSDAH 74

Query: 82  FRSTSGPV-----IAKAGDLAAL-LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F + S  +     I +A ++A         R +LF+DE+HR +   ++   P +ED  L 
Sbjct: 75  FETISAVLSGVKEIRQAVEVAKQHAAQYGRRTILFVDEVHRFNKSQQDAFLPYVEDGTL- 133

Query: 136 LMVGEGPSARSVKIN 150
           + +G      S ++N
Sbjct: 134 IFIGATTENPSFELN 148


>gi|90413225|ref|ZP_01221220.1| putative ATPase protein [Photobacterium profundum 3TCK]
 gi|90325777|gb|EAS42235.1| putative ATPase protein [Photobacterium profundum 3TCK]
          Length = 446

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 72/273 (26%), Positives = 110/273 (40%), Gaps = 54/273 (19%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRT+EE+ GQ       K    A +A    L  ++  GPPG GKTTLA+V A      
Sbjct: 19  MRPRTVEEYIGQQHILGEGKPLRRALEAGH--LHSMILWGPPGTGKTTLAEVAANYANAE 76

Query: 82  FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
               S  V +   D+   +    +      R +LF+DE+HR +   ++   P +ED    
Sbjct: 77  VERVSA-VTSGVKDIRIAIDKARENKMAGRRTILFVDEVHRFNKSQQDAFLPHIED---- 131

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP-LQDRFGIPIRLNFYEIEDLKTI--- 191
                              T I ATT      NP  +    +  R   Y+++ L+T+   
Sbjct: 132 ----------------GTVTFIGATTE-----NPSFELNNALLSRARVYKLKSLETVEVL 170

Query: 192 ---------VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA--KT 240
                      RG   T L   D+    ++    G  R++   L ++ D AE   A  K 
Sbjct: 171 AVVDQALKDSSRGISDTNLEFVDDVKERLSELVCGDARMSLNYLEQLIDMAEENKAGIKQ 230

Query: 241 ITREIADAALLRLAIDKMG-FDQLDLRYLTMIA 272
           IT E+    L  +A +K+G FD     +  MI+
Sbjct: 231 ITLEL----LAEVAGEKIGRFDNKGDLWYDMIS 259


>gi|333028343|ref|ZP_08456407.1| putative recombination factor protein RarA [Streptomyces sp.
           Tu6071]
 gi|332748195|gb|EGJ78636.1| putative recombination factor protein RarA [Streptomyces sp.
           Tu6071]
          Length = 451

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 60/127 (47%), Gaps = 11/127 (8%)

Query: 22  LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL+E  GQ     A S L+  +            V+  GPPG GKTTLA VV++  
Sbjct: 27  MRPRTLDEVVGQQHLLGAGSPLRRLVGEGGGGPAGASSVILWGPPGTGKTTLAYVVSKAT 86

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAMED 131
              F   S  + A   ++  ++              VLF+DEIHR S   ++ L PA+E+
Sbjct: 87  NARFVELSA-ITAGVKEVRTVIDGARRASGGYGKDTVLFLDEIHRFSKAQQDSLLPAVEN 145

Query: 132 FQLDLMV 138
             + L+ 
Sbjct: 146 RWVTLIA 152


>gi|217979120|ref|YP_002363267.1| AAA ATPase central domain protein [Methylocella silvestris BL2]
 gi|217504496|gb|ACK51905.1| AAA ATPase central domain protein [Methylocella silvestris BL2]
          Length = 437

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 71/147 (48%), Gaps = 17/147 (11%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKAR---AEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL E  GQ     +  V  E A  R   + +L  ++F GPPG GKTT+A+++A E 
Sbjct: 22  LRPKTLAEVVGQ-----DHLVGPEGALTRRIASGSLGSLIFWGPPGTGKTTVARLLAHET 76

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDF 132
              F   S  + +   +L  L      R       +LF+DEIHR +   ++   P MED 
Sbjct: 77  NFAFVQVSA-IFSGVAELKKLFEEARGRRAIGQGTLLFVDEIHRFNRAQQDSFLPVMEDG 135

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLI 157
            + L+    E PS       LSR +++
Sbjct: 136 AITLIGATTENPSFELNAALLSRASVL 162


>gi|254302702|ref|ZP_04970060.1| RuvB family helicase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
 gi|148322894|gb|EDK88144.1| RuvB family helicase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
          Length = 407

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 95/218 (43%), Gaps = 49/218 (22%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKAR----AEALDHVLFVGPPGLGKTTLAQVVARE 77
           LRP++LE+F GQ       K+  +    R       L + +F GPPG GK++L ++++  
Sbjct: 18  LRPKSLEDFVGQE------KLLGKDGVIRRLILNSTLSNSIFYGPPGCGKSSLGEIISNT 71

Query: 78  LGVNFRSTSGPVIAKAGDLAALLT----NLE---DRDVLFIDEIHRLSIIVEEILYPAME 130
           L  NF   +    A   D+  ++     N+E    R +LF+DEIHR +   ++ L    E
Sbjct: 72  LDCNFEKLNA-TTASVSDIRNVVETARRNIELYNKRTILFLDEIHRFNKNQQDALLSYTE 130

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEI---- 185
           D  L                    TLI ATT      NP  +    +  R+  +E     
Sbjct: 131 DGTL--------------------TLIGATTE-----NPYYNINNALLSRVMVFEFKALT 165

Query: 186 -EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
            +D+  ++ +G     ++++D+    I   S+G  RIA
Sbjct: 166 NDDISKLIDKGLNFLNISMSDKIKEIIIDISQGDSRIA 203


>gi|300781083|ref|ZP_07090937.1| AAA family ATPase [Corynebacterium genitalium ATCC 33030]
 gi|300532790|gb|EFK53851.1| AAA family ATPase [Corynebacterium genitalium ATCC 33030]
          Length = 448

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 46/129 (35%), Positives = 63/129 (48%), Gaps = 9/129 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRTL+E  GQ       +      +   EA   V+  GPPG GKTT+A ++A  +G N
Sbjct: 37  MRPRTLDELVGQDHLLGEGRPLRRLVEGSGEA--SVILYGPPGTGKTTIASLIAAAMGQN 94

Query: 82  F---RSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           F    + S  V      L     NL    R VLFIDE+HR S   ++ L  A+E+  + L
Sbjct: 95  FVGLSALSSGVKQVREVLDGARRNLARGQRTVLFIDEVHRFSKTQQDALLAAVENRTVLL 154

Query: 137 MVG--EGPS 143
           +    E PS
Sbjct: 155 VAATTENPS 163


>gi|302525831|ref|ZP_07278173.1| recombination factor protein RarA [Streptomyces sp. AA4]
 gi|302434726|gb|EFL06542.1| recombination factor protein RarA [Streptomyces sp. AA4]
          Length = 460

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 51/144 (35%), Positives = 71/144 (49%), Gaps = 18/144 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL+E  GQ   +   + L+  +E A     A   VL  GPPG GKTTLA +V+   
Sbjct: 40  MRPRTLDEVVGQQHLLREGAPLRRLVEGA-----APASVLLYGPPGTGKTTLANLVSIAT 94

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131
           G  F + S  + A   ++  ++     R        VLFIDE+HR S   ++ L  A+ED
Sbjct: 95  GRRFVAMSA-LSAGVKEVRGVIEEARRRRQYNTENTVLFIDEVHRFSKTQQDALLGAVED 153

Query: 132 FQLDLMVG--EGPSARSVKINLSR 153
             + L+    E PS   V   LSR
Sbjct: 154 RTVLLVAATTENPSFSVVSPLLSR 177


>gi|226953311|ref|ZP_03823775.1| recombination factor protein RarA [Acinetobacter sp. ATCC 27244]
 gi|226835937|gb|EEH68320.1| recombination factor protein RarA [Acinetobacter sp. ATCC 27244]
          Length = 425

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 64/195 (32%), Positives = 95/195 (48%), Gaps = 36/195 (18%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPR L E  GQ     +   L+  I+        L  ++F GPPG+GKTT+A ++A+ +
Sbjct: 12  LRPRDLSEIIGQDHLLGDNAPLRQMIDQGH-----LPSIIFWGPPGVGKTTIALLLAQAV 66

Query: 79  GVNFRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
              F S S           VIA++GD   LLT      V+FIDEIHR +   ++ L  A+
Sbjct: 67  DRPFISLSALNTGVKELREVIAESGD---LLT-----PVVFIDEIHRFNKSQQDALLNAV 118

Query: 130 EDFQLDLM--VGEGPSARSVKINLSR---FTL--IAATTRVGLLTNPLQ-DRFGIPIRLN 181
           E  ++ L+    E PS       LSR   +TL  + A     LL   +Q D+F   ++  
Sbjct: 119 EKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDAEAIQTLLNKAIQTDKF---LKER 175

Query: 182 FYEIEDLKTIVQRGA 196
           F +IE+   ++Q  A
Sbjct: 176 FIQIEEYDALIQFAA 190


>gi|114320863|ref|YP_742546.1| recombination factor protein RarA [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114227257|gb|ABI57056.1| Recombination protein MgsA [Alkalilimnicola ehrlichii MLHE-1]
          Length = 461

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 58/116 (50%), Gaps = 9/116 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRTL+EF GQ       +   E    RA     ++  GPPG GKTTLA++VA      
Sbjct: 40  MRPRTLDEFIGQDHILGEGRSLREGI--RAGRPHSMILWGPPGTGKTTLARLVAEAAEAR 97

Query: 82  FRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMED 131
           F + S  V+A   D+ A +           R +LF+DE+HR +   ++   P +ED
Sbjct: 98  FLTLSA-VMAGVKDIRAAMEEATRVRAAGGRTLLFVDEVHRFNKAQQDAFLPWVED 152


>gi|315605005|ref|ZP_07880059.1| replication-associated recombination protein A [Actinomyces sp.
           oral taxon 180 str. F0310]
 gi|315313284|gb|EFU61347.1| replication-associated recombination protein A [Actinomyces sp.
           oral taxon 180 str. F0310]
          Length = 457

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 84/171 (49%), Gaps = 22/171 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP +L+E  GQ   +     L+  IEA +  +     ++F GPPG+GKTTLA+V+AR  
Sbjct: 24  MRPTSLDEVVGQSHQIGPGKALRSMIEADRTPS-----MIFWGPPGVGKTTLARVIARHT 78

Query: 79  GVNF----RSTSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             +F      TSG   I +    A    ++  R ++F+DEIHR +   ++   P +E   
Sbjct: 79  HASFIDFSAVTSGIKEIREVMKQADAQASMGSRTIVFVDEIHRFNKAQQDAFLPFVEKGA 138

Query: 134 LDLMVGEGPSARSVKIN---LSR---FTLIAATTR--VGLLTNPLQDRFGI 176
           + +++G      S ++N   LSR   F L   T    VGL+   L D  G 
Sbjct: 139 I-ILIGATTENPSFEVNNALLSRCKVFVLNGLTEEDLVGLMRRALTDPRGF 188


>gi|302185003|ref|ZP_07261676.1| recombination factor protein RarA [Pseudomonas syringae pv.
           syringae 642]
          Length = 440

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 70/136 (51%), Gaps = 11/136 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LR   L+E+ GQ    ++ K   EA +    AL  ++F GPPG+GKTTLA+++A+    +
Sbjct: 17  LRATNLDEYVGQEHVLAHGKPLREALEQ--GALHSMIFWGPPGVGKTTLAKLLAKVSDAH 74

Query: 82  FRSTSGPVIAKAGDLAALLT-------NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F + S  V+A   ++   +            R +LF+DE+HR +   ++   P +ED  L
Sbjct: 75  FETVSA-VLAGVKEIRQAVEVARQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVEDGTL 133

Query: 135 DLMVGEGPSARSVKIN 150
            + +G      S ++N
Sbjct: 134 -IFIGATTENPSFELN 148


>gi|281208871|gb|EFA83046.1| putative helicase [Polysphondylium pallidum PN500]
          Length = 758

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 67/132 (50%), Gaps = 14/132 (10%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP +L+ F GQ E   N  +F E  K+ A      +  GPPG GKTT+A++V +    +
Sbjct: 305 MRPLSLDFFIGQEELL-NGSMFYEMIKSGAPP--SFILWGPPGSGKTTIAKLVEKNTSSH 361

Query: 82  FRSTSGPVIAKAGDLAALLTN--------LEDRDVLFIDEIHRLSIIVEEILYPAMED-- 131
           F   S  V +   D+  ++T         L+ + +LFIDEIHR +   ++ L P +E+  
Sbjct: 362 FVMLSA-VHSGVADMKQVVTQAIARESGLLKQKTILFIDEIHRFTKSQQDFLLPYVENGT 420

Query: 132 FQLDLMVGEGPS 143
           F L     E PS
Sbjct: 421 FTLIGATTENPS 432


>gi|294793998|ref|ZP_06759135.1| ATPase, AAA family [Veillonella sp. 3_1_44]
 gi|294455568|gb|EFG23940.1| ATPase, AAA family [Veillonella sp. 3_1_44]
          Length = 433

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 76/149 (51%), Gaps = 20/149 (13%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR---EL 78
           +RP  L+   GQ +A      F+ A     + +  +LF GP G GKTTLA ++A+     
Sbjct: 20  MRPTKLDHLYGQEKAVGK-GTFLRAM-VEKDTIPSMLFYGPCGTGKTTLAGIIAKVSNSY 77

Query: 79  GVNFRSTSGPVIAKAGDLAALLTN-------LEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            VN  +T+    A  G+L  ++ +       L+ R +LF+DEIHR +   +++L P +ED
Sbjct: 78  FVNLNATN----AGIGELRTIIEDARKRVRSLQQRTILFLDEIHRFNKSQQDVLLPCVED 133

Query: 132 FQLDLMVGEGPSARSVKIN---LSRFTLI 157
             + +++G        ++N   LSR  LI
Sbjct: 134 GTI-ILIGATTENPFFEVNRPLLSRLRLI 161


>gi|225620542|ref|YP_002721799.1| Holliday junction resolvase helicase subunit-like ATPase
           [Brachyspira hyodysenteriae WA1]
 gi|225215361|gb|ACN84095.1| Holliday junction resolvase helicase subunit-like ATPase
           [Brachyspira hyodysenteriae WA1]
          Length = 431

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 73/263 (27%), Positives = 121/263 (46%), Gaps = 35/263 (13%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP T+EE  GQ   ++    L+  I+  K     +  ++F GPPG+GK+T+A ++A++ 
Sbjct: 18  MRPLTIEEVFGQHHILDKNKTLRKMIDNDK-----ITSMVFFGPPGVGKSTVASIIAKKT 72

Query: 79  GVNFRSTSGPVIAKAGDLAALL----TNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDF 132
              +   +  V++   ++   +     NLE+R   +LFIDEIHR +   ++ L PA+E+ 
Sbjct: 73  KSEYIKLNA-VLSNVSEIREAIKKAEKNLENRKKTILFIDEIHRFNKSQQDALLPAVENG 131

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            + +++G      S  +N   +   A  +R+ L      D   I   +    IED     
Sbjct: 132 SI-ILIG------STTLNPYFYLNNALLSRIMLFEFRNLDDNDIKEAV-LKAIED----- 178

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK---TITREIADAA 249
           +RG     + V DEA   I   S G  R A   L       ++  +K   TIT EI    
Sbjct: 179 KRGLGEYDVDVEDEAVNLIVRYSHGDVRKAFTYLEASYLATQIDESKEKLTITEEIVRDV 238

Query: 250 LLRLAIDKMGFDQLDLRYLTMIA 272
             + +I    FD+ D  Y T+ A
Sbjct: 239 TSKQSI---SFDE-DEHYNTISA 257


>gi|325278997|ref|YP_004251539.1| AAA ATPase central domain-containing protein [Odoribacter
           splanchnicus DSM 20712]
 gi|324310806|gb|ADY31359.1| AAA ATPase central domain protein [Odoribacter splanchnicus DSM
           20712]
          Length = 423

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 48/144 (33%), Positives = 70/144 (48%), Gaps = 18/144 (12%)

Query: 22  LRPRTLEEFTGQVEACSNLKVF---IEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL+++ GQ       KV    IE+       +   +  GPPG+GKTTLA +VA +L
Sbjct: 10  LRPKTLDDYIGQQHLVGKGKVLRKMIESG-----VVSSFILWGPPGVGKTTLAMIVAEQL 64

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131
              F   S  V +   D+  ++   E +        +LFIDEIHR S   ++ L  A+E 
Sbjct: 65  KRPFYVLSA-VSSGVKDVREVIQKAESQRFFNTPNPILFIDEIHRFSKAQQDSLLAAVEK 123

Query: 132 FQLDLM--VGEGPSARSVKINLSR 153
             + L+    E PS   +   LSR
Sbjct: 124 GTVTLIGATTENPSFEVISPLLSR 147


>gi|169838823|ref|ZP_02872011.1| Holliday junction DNA helicase B [candidate division TM7
           single-cell isolate TM7a]
          Length = 54

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 24/48 (50%), Positives = 38/48 (79%)

Query: 146 SVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           S+++ L +FTLI ATTR G L+ PL+DRFG+  R+ +Y++E+LK I++
Sbjct: 1   SIRVELPQFTLIGATTRAGQLSTPLRDRFGVTHRMEYYKLEELKEIIR 48


>gi|56459774|ref|YP_155055.1| recombination factor protein RarA [Idiomarina loihiensis L2TR]
 gi|56178784|gb|AAV81506.1| Uncharacterized ATPase related to the helicase subunit of the
           Holliday junction resolvase [Idiomarina loihiensis L2TR]
          Length = 446

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 63/119 (52%), Gaps = 14/119 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRT++E+ GQ   +     L+V +E        L  ++  GPPG GKTTLA+++A + 
Sbjct: 19  MRPRTVDEYVGQQHLLAPGKPLRVAVEQGH-----LHSMILWGPPGTGKTTLAELIATQA 73

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLED-RDVLFIDEIHRLSIIVEEILYPAMED 131
                     TSG   I KA + A LL   +  R +LF+DE+HR +   ++   P +ED
Sbjct: 74  NATVSRISAVTSGVKDIRKAIEEAKLLAQQQGRRTILFVDEVHRFNKSQQDAFLPHIED 132


>gi|269102237|ref|ZP_06154934.1| putative ATPase protein [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268162135|gb|EEZ40631.1| putative ATPase protein [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 447

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 93/228 (40%), Gaps = 39/228 (17%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRT++E+ GQ       K    A +A    L  ++  GPPG GKTTLA+V A      
Sbjct: 19  MRPRTVQEYIGQKHILGEGKPLRRALEA--GHLHSMILWGPPGTGKTTLAEVAANYANAE 76

Query: 82  FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
               S  V +   D+ A +    D      R +LF+DE+HR +   ++   P +ED    
Sbjct: 77  VERVSA-VTSGVKDIRAAIDKARDNKMAGRRTILFVDEVHRFNKSQQDAFLPHIED---- 131

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGL--LTNPLQDRFGIPIRLNFYEIEDLKTIV- 192
                              T I ATT      L N L  R  +  +L   E E++  ++ 
Sbjct: 132 ----------------GTVTFIGATTENPSFELNNALLSRARV-YKLKSLEKEEILEVLD 174

Query: 193 ------QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
                 +RG   T L   D+    +A    G  R++   L ++ D AE
Sbjct: 175 QALNDKERGVSDTNLNFVDDVKERLADLVCGDARMSLNYLEQLIDMAE 222


>gi|259908928|ref|YP_002649284.1| recombination factor protein RarA [Erwinia pyrifoliae Ep1/96]
 gi|224964550|emb|CAX56062.1| Putative polynucleotide ATPase protein [Erwinia pyrifoliae Ep1/96]
          Length = 447

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 71/143 (49%), Gaps = 11/143 (7%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
            SRN  Q  A  + +RPRTL E+ GQ    +  K    A +AR   L  ++  GPPG GK
Sbjct: 8   FSRNEFQPLA--ARMRPRTLAEYIGQQHLLAAGKPLPRAIEARH--LHSMILWGPPGTGK 63

Query: 68  TTLAQVVARELGVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           TTLA+++ R    +       TSG   I +A + A    +   R +LF+DE+HR +   +
Sbjct: 64  TTLAEIIGRYGQADVERISAVTSGVKEIREAIERARQNRHAGRRTILFVDEVHRFNKSQQ 123

Query: 123 EILYPAMEDFQLDLM--VGEGPS 143
           +   P +ED  +  +    E PS
Sbjct: 124 DAFLPHIEDGTITFVGATTENPS 146


>gi|77919922|ref|YP_357737.1| recombination factor protein RarA [Pelobacter carbinolicus DSM
           2380]
 gi|77546005|gb|ABA89567.1| Recombination protein MgsA [Pelobacter carbinolicus DSM 2380]
          Length = 432

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 46/136 (33%), Positives = 64/136 (47%), Gaps = 22/136 (16%)

Query: 22  LRPRTLEEFTGQVEACSNLKVF---IEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTLEE  GQ       KV    IE+ +     L  V+F GPPG GKTT+AQV+A   
Sbjct: 20  MRPRTLEEMVGQQHLIGTDKVLRRLIESDR-----LSSVIFWGPPGTGKTTMAQVIAGST 74

Query: 79  GVNFRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
              F   S           ++ KA +  A       + +LF+DEIHR +   ++   P +
Sbjct: 75  RSRFVFFSAVLQGIKEVREIVKKAREERAYHNR---KTLLFVDEIHRFNKAQQDAFLPYV 131

Query: 130 EDFQLDLM--VGEGPS 143
           E   + L+    E PS
Sbjct: 132 EKGDITLIGATTENPS 147


>gi|297626347|ref|YP_003688110.1| Uncharacterized ATPase related to the helicase subunit of the
           holliday junction resolvase [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296922112|emb|CBL56680.1| Uncharacterized ATPase related to the helicase subunit of the
           holliday junction resolvase [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 474

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 48/134 (35%), Positives = 68/134 (50%), Gaps = 19/134 (14%)

Query: 22  LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPR+L+E  GQ       S L+   E   A +     V   GPPG+GKTT+A VV+R  
Sbjct: 40  LRPRSLDEIVGQQHLLGPGSPLRRLAEGHAAMS-----VFLWGPPGVGKTTIAAVVSRAT 94

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLSIIVEEILYPAMED 131
              F   S  V A   D+   L ++  R+       VLF+DE+HR S   +++L PA+E+
Sbjct: 95  NRRFVEMSA-VTAGVKDVRREL-DIARRELARGRPTVLFVDEVHRFSKAQQDVLLPAVEN 152

Query: 132 FQLDLMVG--EGPS 143
             + L+    E PS
Sbjct: 153 RIVTLIAATTENPS 166


>gi|254852138|ref|ZP_05241486.1| recombination factor protein RarA [Listeria monocytogenes FSL
           R2-503]
 gi|258605441|gb|EEW18049.1| recombination factor protein RarA [Listeria monocytogenes FSL
           R2-503]
          Length = 422

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 4/130 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L+E  GQ       K+     KA+   L  ++  GPPG+GKT++A  +A      
Sbjct: 10  MRPKALDEIVGQTHLVGKDKIIYRMVKAKQ--LSSMILYGPPGIGKTSIASAIAGSTKYA 67

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR+ +     K   ++ A    +    +L +DE+HRL    ++ L P +E   + +++G 
Sbjct: 68  FRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQDFLLPLLESGAI-ILIGA 126

Query: 141 GPSARSVKIN 150
             S   + IN
Sbjct: 127 TTSNPYIAIN 136


>gi|256840534|ref|ZP_05546042.1| recombination factor protein RarA [Parabacteroides sp. D13]
 gi|256737806|gb|EEU51132.1| recombination factor protein RarA [Parabacteroides sp. D13]
          Length = 423

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 75/144 (52%), Gaps = 18/144 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL+++ GQ   V   + L+  I+A +  +      +  GPPG+GKTTLAQ++A +L
Sbjct: 10  LRPKTLDDYIGQKHLVGQGAVLRKMIDAGRVPS-----FILWGPPGVGKTTLAQIIANKL 64

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131
              F + S  + +   D+  ++   +          +LFIDEIHR S   ++ L  A+E 
Sbjct: 65  DAPFYTLSA-ISSGVKDVREVIEKAKSNRFFNTVSPILFIDEIHRFSKSQQDSLLNAVET 123

Query: 132 FQLDLM--VGEGPSARSVKINLSR 153
             + L+    E PS   ++  LSR
Sbjct: 124 GVVTLIGATTENPSFEVIRPLLSR 147


>gi|254556460|ref|YP_003062877.1| recombination factor protein RarA [Lactobacillus plantarum JDM1]
 gi|254045387|gb|ACT62180.1| recombination factor protein RarA [Lactobacillus plantarum JDM1]
          Length = 449

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 90/189 (47%), Gaps = 16/189 (8%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M +E L + + S        +RP TL +F GQ       K+  +      + L  ++F G
Sbjct: 1   MRQESLFNPDKSSSSPLAYRVRPVTLADFKGQEHLLGPGKLLRQLIAE--DQLPSLIFWG 58

Query: 62  PPGLGKTTLAQVVARELGVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHR 116
           PPG+GKTTLA+++A++   +F +    TSG   I +  D A    +  ++ ++FIDEIHR
Sbjct: 59  PPGVGKTTLAEIIAQQTQSHFITFSAVTSGIKEIRQIMDEAEANRDFGEKTIVFIDEIHR 118

Query: 117 LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN---LSR---FTLIAATTRV--GLLTN 168
            +   ++   P +E   + L +G      S +IN   LSR     L A T      +L  
Sbjct: 119 FNKAQQDAFLPYVERGSITL-IGATTENPSFEINAALLSRCKVLVLKALTPNALEAVLQG 177

Query: 169 PLQDRFGIP 177
            LQ+  G P
Sbjct: 178 ALQNPKGFP 186


>gi|237740164|ref|ZP_04570645.1| ATPase [Fusobacterium sp. 2_1_31]
 gi|229422181|gb|EEO37228.1| ATPase [Fusobacterium sp. 2_1_31]
          Length = 407

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 95/218 (43%), Gaps = 49/218 (22%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKAR----AEALDHVLFVGPPGLGKTTLAQVVARE 77
           LRP+ L++F GQ       K+  +    R      AL + +F GPPG GK++L ++++  
Sbjct: 18  LRPKNLDDFVGQE------KLLGKDGVIRRLILNSALSNSIFYGPPGCGKSSLGEIISNT 71

Query: 78  LGVNFRSTSGPVIAKAGDLAALLT----NLE---DRDVLFIDEIHRLSIIVEEILYPAME 130
           L  NF   +    A   D+  ++     N+E    R +LF+DEIHR +   ++ L    E
Sbjct: 72  LDCNFEKLNATT-ASVSDIRTVVETAKRNIELYNKRTILFLDEIHRFNKNQQDALLSYTE 130

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEI---- 185
           D  L                    TLI ATT      NP  +    +  R+  +E     
Sbjct: 131 DGTL--------------------TLIGATTE-----NPYYNINNALLSRVMVFEFKALT 165

Query: 186 -EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
            ED+  ++ +G K   ++++ +    I   ++G  RIA
Sbjct: 166 NEDISKLIDKGLKFLNISMSGKIKEIIIDIAQGDSRIA 203


>gi|331017252|gb|EGH97308.1| recombination factor protein RarA [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 440

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 71/135 (52%), Gaps = 9/135 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LR   L+E+ GQ    ++ K   EA +    AL  ++F GPPG+GKTTLA+++A+    +
Sbjct: 17  LRATNLDEYVGQEHVLAHGKPLREALEQ--GALHSMIFWGPPGVGKTTLARLLAKVSDAH 74

Query: 82  FRSTSGPV-----IAKAGDLAALLT-NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F + S  +     I +A ++A         R +LF+DE+HR +   ++   P +ED  L 
Sbjct: 75  FETVSAVLAGVKEIRQAVEVAKQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVEDGTL- 133

Query: 136 LMVGEGPSARSVKIN 150
           + +G      S ++N
Sbjct: 134 IFIGATTENPSFELN 148


>gi|294811570|ref|ZP_06770213.1| recombination factor protein RarA [Streptomyces clavuligerus ATCC
           27064]
 gi|326440045|ref|ZP_08214779.1| recombination factor protein RarA [Streptomyces clavuligerus ATCC
           27064]
 gi|294324169|gb|EFG05812.1| recombination factor protein RarA [Streptomyces clavuligerus ATCC
           27064]
          Length = 454

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 62/127 (48%), Gaps = 11/127 (8%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL+E  GQ   ++  S L+  +            V+  GPPG+GKTTLA VV+   
Sbjct: 27  MRPRTLDEVVGQRHLLKPGSPLRRLVGEGPGGPAGASSVILWGPPGIGKTTLAYVVSAAT 86

Query: 79  GVNFRSTSGPVIAKAGDLAALLT-------NLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
              F   S  + A   ++ A++              VLF+DEIHR S   ++ L PA+E+
Sbjct: 87  DKRFVELSA-ITAGVKEVRAVIDGARRAAGGFGKETVLFLDEIHRFSKAQQDSLLPAVEN 145

Query: 132 FQLDLMV 138
             + L+ 
Sbjct: 146 RWVTLIA 152


>gi|281422083|ref|ZP_06253082.1| replication-associated recombination protein A [Prevotella copri
           DSM 18205]
 gi|281403872|gb|EFB34552.1| replication-associated recombination protein A [Prevotella copri
           DSM 18205]
          Length = 424

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 75/147 (51%), Gaps = 18/147 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP TL ++ GQ   V   + L+  I+A +     +   +  GPPG+GKTTLAQ+VA+ +
Sbjct: 9   MRPHTLADYVGQQHLVGEGAVLRKMIDAGR-----ISSFILWGPPGVGKTTLAQIVAQTI 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131
            V F + S  V +   D+  ++   +          +LFIDEIHR S   ++ L  A+E 
Sbjct: 64  KVPFFTLSA-VTSGVKDVREVIERAKSGRFFNSASPILFIDEIHRFSKSQQDSLLGAVEK 122

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156
             + L+    E PS   ++  LSR  L
Sbjct: 123 GIVTLIGATTENPSFEVIRPLLSRCQL 149


>gi|28870511|ref|NP_793130.1| ATPase, AAA family [Pseudomonas syringae pv. tomato str. DC3000]
 gi|28853759|gb|AAO56825.1| ATPase, AAA family [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 440

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 71/135 (52%), Gaps = 9/135 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LR   L+E+ GQ    ++ K   EA +    AL  ++F GPPG+GKTTLA+++A+    +
Sbjct: 17  LRATNLDEYVGQEHVLAHGKPLREALEQ--GALHSMIFWGPPGVGKTTLARLLAKVSDAH 74

Query: 82  FRSTSGPV-----IAKAGDLAALLT-NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F + S  +     I +A ++A         R +LF+DE+HR +   ++   P +ED  L 
Sbjct: 75  FETVSAVLAGVKEIRQAVEVAKQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVEDGTL- 133

Query: 136 LMVGEGPSARSVKIN 150
           + +G      S ++N
Sbjct: 134 IFIGATTENPSFELN 148


>gi|66046406|ref|YP_236247.1| recombination factor protein RarA [Pseudomonas syringae pv.
           syringae B728a]
 gi|63257113|gb|AAY38209.1| AAA ATPase, central region [Pseudomonas syringae pv. syringae
           B728a]
 gi|330972888|gb|EGH72954.1| recombination factor protein RarA [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 440

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 70/136 (51%), Gaps = 11/136 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LR   L+E+ GQ    ++ K   EA +    AL  ++F GPPG+GKTTLA+++A+    +
Sbjct: 17  LRATNLDEYVGQEHVLAHGKPLREALEQ--GALHSMIFWGPPGVGKTTLAKLLAKVSDAH 74

Query: 82  FRSTSGPVIAKAGDLAALLT-------NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F + S  V+A   ++   +            R +LF+DE+HR +   ++   P +ED  L
Sbjct: 75  FETVSA-VLAGVKEIRQAVEVARQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVEDGTL 133

Query: 135 DLMVGEGPSARSVKIN 150
            + +G      S ++N
Sbjct: 134 -IFIGATTENPSFELN 148


>gi|328474875|gb|EGF45675.1| recombination factor protein RarA [Listeria monocytogenes 220]
          Length = 428

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 4/130 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L+E  GQ       K+     KA+   L  ++  GPPG+GKT++A  +A      
Sbjct: 10  MRPKALDEIVGQTHLVGKDKIIYRMVKAKQ--LSSMILYGPPGIGKTSIASAIAGSTKYA 67

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR+ +     K   ++ A    +    +L +DE+HRL    ++ L P +E   + +++G 
Sbjct: 68  FRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQDFLLPLLESGAI-ILIGA 126

Query: 141 GPSARSVKIN 150
             S   + IN
Sbjct: 127 TTSNPYIAIN 136


>gi|302541110|ref|ZP_07293452.1| AAA family ATPase [Streptomyces hygroscopicus ATCC 53653]
 gi|302458728|gb|EFL21821.1| AAA family ATPase [Streptomyces himastatinicus ATCC 53653]
          Length = 455

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 62/127 (48%), Gaps = 11/127 (8%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL+E  GQ   +   S L+  +            VL  GPPG+GKTTLA VV++  
Sbjct: 27  MRPRTLDEVVGQQHLLRPGSPLRRLVGEGSGGPAGPSSVLLWGPPGIGKTTLAYVVSQAT 86

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLSIIVEEILYPAMED 131
              F   S  + A   ++ A++              VLF+DEIHR S   ++ L PA+E+
Sbjct: 87  QKRFVELSA-ITAGVKEVRAVIDGARRSSGAYGRETVLFLDEIHRFSKAQQDSLLPAVEN 145

Query: 132 FQLDLMV 138
             + L+ 
Sbjct: 146 RWVTLIA 152


>gi|313899860|ref|ZP_07833363.1| recombination factor protein RarA [Clostridium sp. HGF2]
 gi|312955475|gb|EFR37140.1| recombination factor protein RarA [Clostridium sp. HGF2]
          Length = 421

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 101/237 (42%), Gaps = 45/237 (18%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L++  GQ       KV       +   L  ++F GPPG GKTTLA V+A EL + 
Sbjct: 9   MRPQHLDDIIGQQHLIGEGKVLRRCVLEKR--LFSMIFYGPPGTGKTTLAMVLANELELP 66

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
           FR  +  V     DL  +    +  +  ++ IDE+HRL+   +++L P +E+        
Sbjct: 67  FRMFNA-VTGNKKDLETIFQEAKFYEGLIVIIDEVHRLNKDKQDLLLPHVEN-------- 117

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEIED----------L 188
                          TLI ATT     +NPL      I  R + +EI+           +
Sbjct: 118 ------------GNITLIGATT-----SNPLHAINPAIRSRCHLFEIKQAQQEDIEQALM 160

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           K I  +      + + +EA   IA  S G  R +  +L    +   +A    IT+E+
Sbjct: 161 KAIHHQDGLNDSVQIEEEALHIIARHSNGDIRYSLNIL----EICALASDGVITQEL 213


>gi|194336934|ref|YP_002018728.1| AAA ATPase central domain protein [Pelodictyon phaeoclathratiforme
           BU-1]
 gi|194309411|gb|ACF44111.1| AAA ATPase central domain protein [Pelodictyon phaeoclathratiforme
           BU-1]
          Length = 447

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 68/137 (49%), Gaps = 14/137 (10%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP TL++  GQ   V A   L+ F+   +     +  ++F GPPG GKTTLA++ A  L
Sbjct: 31  VRPHTLDDMAGQEHLVGANGPLRKFLSGGQ-----MPSMIFWGPPGSGKTTLAEICATSL 85

Query: 79  GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             +F   S        + KA + A        R +LFIDEIHR +   ++ L  A+E   
Sbjct: 86  NYSFEQLSAIDSGVKEVRKALEQAEKSRRSGRRTILFIDEIHRFNKAQQDTLLHAIEQ-G 144

Query: 134 LDLMVGEGPSARSVKIN 150
           L +++G      S ++N
Sbjct: 145 LIVLIGATTENPSFEVN 161


>gi|198282689|ref|YP_002219010.1| AAA ATPase central domain-containing protein [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218667409|ref|YP_002424881.1| ATPase, AAA family [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198247210|gb|ACH82803.1| AAA ATPase central domain protein [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218519622|gb|ACK80208.1| ATPase, AAA family [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 442

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 69/142 (48%), Gaps = 15/142 (10%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP+TL+ + GQ         L+  ++A       L  ++  GPPG GKTTLAQ++A   
Sbjct: 15  MRPQTLDAYAGQRHLLGKEGPLQAMVQAGH-----LHSMILWGPPGSGKTTLAQLLAHTA 69

Query: 79  GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           G +F+  S        I  A   A    +L    VLFIDEIHR +   ++ L P +E+  
Sbjct: 70  GRHFQILSAVNSGVREIRAAVSSAEAAQSLGQGTVLFIDEIHRFNKSQQDALLPYVEEGV 129

Query: 134 LDLM--VGEGPSARSVKINLSR 153
           + L+    E PS   V   LSR
Sbjct: 130 VTLIGATTENPSFALVNALLSR 151


>gi|331010747|gb|EGH90803.1| recombination factor protein RarA [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 440

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 71/135 (52%), Gaps = 9/135 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LR   L+E+ GQ    ++ K   EA +    AL  ++F GPPG+GKTTLA+++A+    +
Sbjct: 17  LRATNLDEYVGQEHVLAHGKPLREALEQ--GALHSMIFWGPPGVGKTTLARLLAKVSDAH 74

Query: 82  FRSTSGPV-----IAKAGDLAALLT-NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F + S  +     I +A ++A         R +LF+DE+HR +   ++   P +ED  L 
Sbjct: 75  FETVSAVLAGVKEIRQAVEVAKQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVEDGTL- 133

Query: 136 LMVGEGPSARSVKIN 150
           + +G      S ++N
Sbjct: 134 IFIGATTENPSFELN 148


>gi|299143961|ref|ZP_07037041.1| ATPase, AAA family [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298518446|gb|EFI42185.1| ATPase, AAA family [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 434

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 58/116 (50%), Gaps = 10/116 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L EF GQ       +      K+  + +  ++F GPPG+GKTTLA+++A      
Sbjct: 22  LRPKNLNEFFGQKHLVGEGRYLSRIIKS--DRVSSMIFYGPPGVGKTTLARIIANTTKKR 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAME 130
           F   S  V +   +L  +L   E+         +LFIDEIHR +   ++ L P +E
Sbjct: 80  FVQISA-VTSNIKELREVLNEAEEFLKYENKNTILFIDEIHRFNKTQQDALLPFVE 134


>gi|297571411|ref|YP_003697185.1| ATPase AAA [Arcanobacterium haemolyticum DSM 20595]
 gi|296931758|gb|ADH92566.1| AAA ATPase central domain protein [Arcanobacterium haemolyticum DSM
           20595]
          Length = 442

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 46/136 (33%), Positives = 66/136 (48%), Gaps = 19/136 (13%)

Query: 22  LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP +L +  GQ         L+  IE + A   +   V+  GPPG+GKTTLA ++A   
Sbjct: 23  MRPTSLSDVVGQTHLLGPGQPLRQLIEPSHAGVPS--SVILWGPPGIGKTTLAYLIAGTS 80

Query: 79  GVNFRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           G NF   S            IA+A D  A+        VLF+DE+HR S   ++ L PA+
Sbjct: 81  GRNFAEISAVSSGVAQLRESIARAKDELAITGK---ETVLFVDEVHRFSKAQQDALLPAV 137

Query: 130 EDFQLDLMVG--EGPS 143
           E+  + L+    E PS
Sbjct: 138 ENGWVILVAATTENPS 153


>gi|288939849|ref|YP_003442089.1| AAA ATPase central domain-containing protein [Allochromatium
           vinosum DSM 180]
 gi|288895221|gb|ADC61057.1| AAA ATPase central domain protein [Allochromatium vinosum DSM 180]
          Length = 435

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 70/143 (48%), Gaps = 17/143 (11%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPR L+E  GQ         L++  ++ +A +     ++  GPPG+GKTTLA++ A+  
Sbjct: 17  LRPRVLDEVIGQSHLLGEGKPLRLAFQSGQAHS-----MILWGPPGVGKTTLARLTAQAF 71

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDF 132
              F + S  V A   D+ A +   E       R +LF+DEIHR +   ++ L P +E  
Sbjct: 72  AGEFIALSA-VFAGVKDIRAAMEQAEHHRSRGRRTILFVDEIHRFNKAQQDALLPYVESG 130

Query: 133 QLDLM--VGEGPSARSVKINLSR 153
            + L+    E PS       LSR
Sbjct: 131 LVTLIGATTENPSFEVNAALLSR 153


>gi|150007159|ref|YP_001301902.1| recombination factor protein RarA [Parabacteroides distasonis ATCC
           8503]
 gi|149935583|gb|ABR42280.1| putative AAA family ATPase protein [Parabacteroides distasonis ATCC
           8503]
          Length = 422

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 75/144 (52%), Gaps = 18/144 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL+++ GQ   V   + L+  I+A +  +      +  GPPG+GKTTLAQ++A +L
Sbjct: 9   LRPKTLDDYIGQKHLVGQGAVLRKMIDAGRVPS-----FILWGPPGVGKTTLAQIIANKL 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131
              F + S  + +   D+  ++   +          +LFIDEIHR S   ++ L  A+E 
Sbjct: 64  DAPFYTLSA-ISSGVKDVREVIEKAKSNRFFNTVSPILFIDEIHRFSKSQQDSLLNAVET 122

Query: 132 FQLDLM--VGEGPSARSVKINLSR 153
             + L+    E PS   ++  LSR
Sbjct: 123 GVVTLIGATTENPSFEVIRPLLSR 146


>gi|330875796|gb|EGH09945.1| recombination factor protein RarA [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 440

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 71/135 (52%), Gaps = 9/135 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LR   L+E+ GQ    ++ K   EA +    AL  ++F GPPG+GKTTLA+++A+    +
Sbjct: 17  LRATNLDEYVGQEHVLAHGKPLREALEQ--GALHSMIFWGPPGVGKTTLARLLAKVSDAH 74

Query: 82  FRSTSGPV-----IAKAGDLAALLT-NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F + S  +     I +A ++A         R +LF+DE+HR +   ++   P +ED  L 
Sbjct: 75  FETVSAVLAGVKEIRQAVEVAKQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVEDGTL- 133

Query: 136 LMVGEGPSARSVKIN 150
           + +G      S ++N
Sbjct: 134 IFIGATTENPSFELN 148


>gi|289625405|ref|ZP_06458359.1| recombination factor protein RarA [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|289649312|ref|ZP_06480655.1| recombination factor protein RarA [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|298487530|ref|ZP_07005572.1| Holliday junction DNA helicase RuvB [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298157914|gb|EFH98992.1| Holliday junction DNA helicase RuvB [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|320323768|gb|EFW79852.1| recombination factor protein RarA [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320327909|gb|EFW83914.1| recombination factor protein RarA [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330866858|gb|EGH01567.1| recombination factor protein RarA [Pseudomonas syringae pv. aesculi
           str. 0893_23]
 gi|330889679|gb|EGH22340.1| recombination factor protein RarA [Pseudomonas syringae pv. mori
           str. 301020]
 gi|330987921|gb|EGH86024.1| recombination factor protein RarA [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 440

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 71/135 (52%), Gaps = 9/135 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LR   L+E+ GQ    ++ K   EA +    AL  ++F GPPG+GKTTLA+++A+    +
Sbjct: 17  LRATNLDEYVGQEHVLAHGKPLREALEQ--GALHSMIFWGPPGVGKTTLARLLAKVSDAH 74

Query: 82  FRSTSGPV-----IAKAGDLAALLT-NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F + S  +     I +A ++A         R +LF+DE+HR +   ++   P +ED  L 
Sbjct: 75  FETVSAVLAGVKEIRQAVEVAKQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVEDGTL- 133

Query: 136 LMVGEGPSARSVKIN 150
           + +G      S ++N
Sbjct: 134 IFIGATTENPSFELN 148


>gi|270340043|ref|ZP_06006828.2| replication-associated recombination protein A [Prevotella
           bergensis DSM 17361]
 gi|270332946|gb|EFA43732.1| replication-associated recombination protein A [Prevotella
           bergensis DSM 17361]
          Length = 424

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 74/147 (50%), Gaps = 18/147 (12%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL+++ GQ         L+  +E+ +     +   +  GPPG+GKTTLAQ++A  L
Sbjct: 9   LRPQTLDDYIGQEHVVGKDAVLRKMVESGR-----ISSFILWGPPGVGKTTLAQIIAGML 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131
            V F + S  V +   D+  ++   +          +LFIDEIHR S   ++ L  A+E 
Sbjct: 64  KVPFFTLSA-VTSGVKDVREVIERAKQGRFFNSGSPILFIDEIHRFSKSQQDSLLGAVER 122

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156
             + L+    E PS   ++  LSR  L
Sbjct: 123 GVVTLIGATTENPSFEVIRPLLSRCQL 149


>gi|213970053|ref|ZP_03398185.1| ATPase, AAA family [Pseudomonas syringae pv. tomato T1]
 gi|301381409|ref|ZP_07229827.1| recombination factor protein RarA [Pseudomonas syringae pv. tomato
           Max13]
 gi|302058407|ref|ZP_07249948.1| recombination factor protein RarA [Pseudomonas syringae pv. tomato
           K40]
 gi|302130344|ref|ZP_07256334.1| recombination factor protein RarA [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|213925157|gb|EEB58720.1| ATPase, AAA family [Pseudomonas syringae pv. tomato T1]
          Length = 440

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 71/135 (52%), Gaps = 9/135 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LR   L+E+ GQ    ++ K   EA +    AL  ++F GPPG+GKTTLA+++A+    +
Sbjct: 17  LRATNLDEYVGQEHVLAHGKPLREALEQ--GALHSMIFWGPPGVGKTTLARLLAKVSDAH 74

Query: 82  FRSTSGPV-----IAKAGDLAALLT-NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F + S  +     I +A ++A         R +LF+DE+HR +   ++   P +ED  L 
Sbjct: 75  FETVSAVLAGVKEIRQAVEVAKQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVEDGTL- 133

Query: 136 LMVGEGPSARSVKIN 150
           + +G      S ++N
Sbjct: 134 IFIGATTENPSFELN 148


>gi|99080129|ref|YP_612283.1| recombination factor protein RarA [Ruegeria sp. TM1040]
 gi|99036409|gb|ABF63021.1| Recombination protein MgsA [Ruegeria sp. TM1040]
          Length = 443

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 72/137 (52%), Gaps = 14/137 (10%)

Query: 22  LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPRTL E  GQ +   A + L V + +    +     ++F GPPG+GKTT+A+++A+E 
Sbjct: 30  LRPRTLAEVIGQDQVLGAEAPLGVMLSSGSLSS-----LIFWGPPGVGKTTIARLLAQET 84

Query: 79  GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
            ++F   S      P + K  + A +        +LF+DEIHR +   ++   P MED  
Sbjct: 85  DLHFVQISAIFTGVPDLKKVFEAAKIRRQNGQGTLLFVDEIHRFNKAQQDGFLPHMEDGT 144

Query: 134 LDLMVGEGPSARSVKIN 150
           + L+VG      S ++N
Sbjct: 145 I-LLVGATTENPSFELN 160


>gi|301311175|ref|ZP_07217103.1| ATPase, AAA family [Bacteroides sp. 20_3]
 gi|300830749|gb|EFK61391.1| ATPase, AAA family [Bacteroides sp. 20_3]
          Length = 422

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 75/144 (52%), Gaps = 18/144 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL+++ GQ   V   + L+  I+A +  +      +  GPPG+GKTTLAQ++A +L
Sbjct: 9   LRPKTLDDYIGQKHLVGQGAVLRKMIDAGRVPS-----FILWGPPGVGKTTLAQIIANKL 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131
              F + S  + +   D+  ++   +          +LFIDEIHR S   ++ L  A+E 
Sbjct: 64  DAPFYTLSA-ISSGVKDVREVIEKAKSNRFFNTVSPILFIDEIHRFSKSQQDSLLNAVET 122

Query: 132 FQLDLM--VGEGPSARSVKINLSR 153
             + L+    E PS   ++  LSR
Sbjct: 123 GVVTLIGATTENPSFEVIRPLLSR 146


>gi|71733913|ref|YP_275261.1| recombination factor protein RarA [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71554466|gb|AAZ33677.1| ATPase, AAA family [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 440

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 71/135 (52%), Gaps = 9/135 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LR   L+E+ GQ    ++ K   EA +    AL  ++F GPPG+GKTTLA+++A+    +
Sbjct: 17  LRATNLDEYVGQEHVLAHGKPLREALEQ--GALHSMIFWGPPGVGKTTLARLLAKVSDAH 74

Query: 82  FRSTSGPV-----IAKAGDLAALLT-NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F + S  +     I +A ++A         R +LF+DE+HR +   ++   P +ED  L 
Sbjct: 75  FETVSAVLAGVKEIRQAVEVAKQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVEDGTL- 133

Query: 136 LMVGEGPSARSVKIN 150
           + +G      S ++N
Sbjct: 134 IFIGATTENPSFELN 148


>gi|19703642|ref|NP_603204.1| recombination factor protein RarA [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|19713756|gb|AAL94503.1| ATPase associated with chromosome architecture/replication
           [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
          Length = 407

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 95/230 (41%), Gaps = 41/230 (17%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            L  +N    +     LRP++L++F GQ +      V           L + +F GPPG 
Sbjct: 2   NLFQKNYKNVEPLAYKLRPKSLDDFVGQEKLLGKDGVITRLI--LNSTLSNSIFYGPPGC 59

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLT----NLE---DRDVLFIDEIHRLS 118
           GK++L ++++  L  NF   +    A   D+  ++     N+E    R +LF+DEIHR +
Sbjct: 60  GKSSLGEIISNTLDCNFEKLNATT-ASVSDIRNVVETARRNIELYNKRTILFLDEIHRFN 118

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIP 177
              ++ L    ED  L                    TLI ATT      NP  +    + 
Sbjct: 119 KNQQDALLSYTEDGTL--------------------TLIGATTE-----NPYYNINNALL 153

Query: 178 IRLNFYEI-----EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
            R+  +E      ED+  ++ +G     + + D+    I   S+G  RIA
Sbjct: 154 SRVMVFEFKALTNEDILKLIDKGLNFLNICMGDKIKEIIVDISQGDSRIA 203


>gi|315282425|ref|ZP_07870842.1| recombination factor protein RarA [Listeria marthii FSL S4-120]
 gi|313613930|gb|EFR87657.1| recombination factor protein RarA [Listeria marthii FSL S4-120]
          Length = 427

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 4/130 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L+E  GQ       K+     KA+   L  ++  GPPG+GKT++A  +A      
Sbjct: 10  MRPKALDEIVGQTHLVGKDKIIYRMVKAKQ--LSSMILYGPPGIGKTSIASAIAGSTKYA 67

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR+ +     K   ++ A    +    +L +DE+HRL    ++ L P +E   + +++G 
Sbjct: 68  FRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQDFLLPLLESGAI-ILIGA 126

Query: 141 GPSARSVKIN 150
             S   + IN
Sbjct: 127 TTSNPYIAIN 136


>gi|297195510|ref|ZP_06912908.1| recombination factor protein RarA [Streptomyces pristinaespiralis
           ATCC 25486]
 gi|197722126|gb|EDY66034.1| recombination factor protein RarA [Streptomyces pristinaespiralis
           ATCC 25486]
          Length = 453

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 67/129 (51%), Gaps = 13/129 (10%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFI-EAAKARAEA-LDHVLFVGPPGLGKTTLAQVVAR 76
           +RPRTL+E  GQ   ++  S L+  + E A     A +  V+  GPPG GKTTLA VV++
Sbjct: 27  MRPRTLDEVVGQRHLLKPGSPLRRLVGEGANGGGPAGVSSVILWGPPGTGKTTLAYVVSK 86

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAM 129
                F   S  + A   ++ A++   +          VLF+DEIHR S   ++ L PA+
Sbjct: 87  ATNKRFVELSA-ITAGVKEVRAVIEGAKRAAGGFGKETVLFLDEIHRFSKAQQDSLLPAV 145

Query: 130 EDFQLDLMV 138
           E+  + L+ 
Sbjct: 146 ENRWVTLIA 154


>gi|149179070|ref|ZP_01857643.1| hypothetical protein PM8797T_19475 [Planctomyces maris DSM 8797]
 gi|148842110|gb|EDL56500.1| hypothetical protein PM8797T_19475 [Planctomyces maris DSM 8797]
          Length = 445

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 63/118 (53%), Gaps = 14/118 (11%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR+LEEF GQ       K+      A  + +  ++F G PG GKT+LA+++AR+    
Sbjct: 22  MRPRSLEEFVGQSHFLGEGKLLRRILAA--DRIGSLIFYGSPGTGKTSLAELIARQSNRR 79

Query: 82  FRSTSGPVIAKAG--DLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAME 130
           F + +    A AG  ++ A L    D       + +LFIDE+H  S + +++L P +E
Sbjct: 80  FEALNA---ASAGIKEVRAALDRARDELATGGKQTILFIDELHHFSKVQQDVLLPDVE 134


>gi|116872943|ref|YP_849724.1| recombination factor protein RarA [Listeria welshimeri serovar 6b
           str. SLCC5334]
 gi|116741821|emb|CAK20945.1| ATPase, AAA domain family protein [Listeria welshimeri serovar 6b
           str. SLCC5334]
          Length = 427

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 4/130 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L+E  GQ       K+     KA+   L  ++  GPPG+GKT++A  +A      
Sbjct: 10  MRPKALDEIVGQTHLVGKDKIIYRMVKAKQ--LSSMILYGPPGIGKTSIASAIAGSTKYA 67

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR+ +     K   ++ A    +    +L +DE+HRL    ++ L P +E   + +++G 
Sbjct: 68  FRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQDFLLPLLESGAI-ILIGA 126

Query: 141 GPSARSVKIN 150
             S   + IN
Sbjct: 127 TTSNPYIAIN 136


>gi|114047507|ref|YP_738057.1| recombination factor protein RarA [Shewanella sp. MR-7]
 gi|113888949|gb|ABI43000.1| Recombination protein MgsA [Shewanella sp. MR-7]
          Length = 443

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 117/262 (44%), Gaps = 35/262 (13%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRT+ E+ GQ         L+  +EA +A +     ++  GPPG GKTTLA+++A   
Sbjct: 19  MRPRTIAEYIGQAHLLGEGQPLRQALEAGRAHS-----MMLWGPPGTGKTTLAELIAHYS 73

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAMED 131
             +    S  V +   D+ A +   +        R +LF+DE+HR +   ++   P +ED
Sbjct: 74  NAHVERISA-VTSGVKDIRAAIEQAQAVAQSRRQRTLLFVDEVHRFNKSQQDAFLPFIED 132

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
             + + +G      S +IN      + +  RV L+    QD          + I    T 
Sbjct: 133 GTV-IFIGATTENPSFEIN----NALLSRARVYLIKRLSQDEI-------VHIITQALTD 180

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
            +RG     L +  +   ++A    G  R A  LL  + D   VA   + T E+    L+
Sbjct: 181 AERGLGQRQLIMPTDVLNKLAQLCDGDARKALNLLELMSDM--VADGGSFTTEM----LV 234

Query: 252 RLAIDKM-GFDQLDLRYLTMIA 272
           ++A  ++ GFD+   ++  +I+
Sbjct: 235 QVAGHQVAGFDKNGDQFYDLIS 256


>gi|313623688|gb|EFR93840.1| recombination factor protein RarA [Listeria innocua FSL J1-023]
          Length = 427

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 4/130 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L+E  GQ       K+     KA+   L  ++  GPPG+GKT++A  +A      
Sbjct: 10  MRPKALDEIVGQTHLVGKDKIIYRMVKAKQ--LSSMILYGPPGIGKTSIASAIAGSTKYA 67

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR+ +     K   ++ A    +    +L +DE+HRL    ++ L P +E   + +++G 
Sbjct: 68  FRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQDFLLPLLESGAI-ILIGA 126

Query: 141 GPSARSVKIN 150
             S   + IN
Sbjct: 127 TTSNPYIAIN 136


>gi|16800617|ref|NP_470885.1| recombination factor protein RarA [Listeria innocua Clip11262]
 gi|16414036|emb|CAC96780.1| lin1549 [Listeria innocua Clip11262]
          Length = 427

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 4/130 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L+E  GQ       K+     KA+   L  ++  GPPG+GKT++A  +A      
Sbjct: 10  MRPKALDEIVGQTHLVGKDKIIYRMVKAKQ--LSSMILYGPPGIGKTSIASAIAGSTKYA 67

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR+ +     K   ++ A    +    +L +DE+HRL    ++ L P +E   + +++G 
Sbjct: 68  FRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQDFLLPLLESGAI-ILIGA 126

Query: 141 GPSARSVKIN 150
             S   + IN
Sbjct: 127 TTSNPYIAIN 136


>gi|333030271|ref|ZP_08458332.1| AAA ATPase central domain protein [Bacteroides coprosuis DSM 18011]
 gi|332740868|gb|EGJ71350.1| AAA ATPase central domain protein [Bacteroides coprosuis DSM 18011]
          Length = 423

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 74/147 (50%), Gaps = 18/147 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP +L+ + GQ   V   + L+  IE  +     +   +  GPPG+GKTTLA++++ +L
Sbjct: 8   LRPTSLDNYIGQQHLVGPNAPLRKMIEGGR-----ISSFILWGPPGVGKTTLAKIISHQL 62

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131
            V F + S  V +   D+  ++   +          +LFIDEIHR S   ++ L  A+E 
Sbjct: 63  DVPFYTLSA-VTSGVKDVREIIQKAKSNRFFNQASPILFIDEIHRFSKSQQDSLLGAVEQ 121

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156
             + L+    E PS   ++  LSR  L
Sbjct: 122 GVVTLIGATTENPSFEVIRPLLSRSQL 148


>gi|255015227|ref|ZP_05287353.1| recombination factor protein RarA [Bacteroides sp. 2_1_7]
 gi|262381155|ref|ZP_06074293.1| recombination factor protein RarA [Bacteroides sp. 2_1_33B]
 gi|298377584|ref|ZP_06987536.1| ATPase, AAA family [Bacteroides sp. 3_1_19]
 gi|262296332|gb|EEY84262.1| recombination factor protein RarA [Bacteroides sp. 2_1_33B]
 gi|298265603|gb|EFI07264.1| ATPase, AAA family [Bacteroides sp. 3_1_19]
          Length = 423

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 75/144 (52%), Gaps = 18/144 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL+++ GQ   V   + L+  I+A +  +      +  GPPG+GKTTLAQ++A +L
Sbjct: 10  LRPKTLDDYIGQKHLVGQGAVLRKMIDAGRVPS-----FILWGPPGVGKTTLAQIIANKL 64

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131
              F + S  + +   D+  ++   +          +LFIDEIHR S   ++ L  A+E 
Sbjct: 65  DAPFYTLSA-ISSGVKDVREVIEKAKSNRFFNTVSPILFIDEIHRFSKSQQDSLLNAVET 123

Query: 132 FQLDLM--VGEGPSARSVKINLSR 153
             + L+    E PS   ++  LSR
Sbjct: 124 GVVTLIGATTENPSFEVIRPLLSR 147


>gi|313893197|ref|ZP_07826774.1| ATPase, AAA family [Veillonella sp. oral taxon 158 str. F0412]
 gi|313442550|gb|EFR60965.1| ATPase, AAA family [Veillonella sp. oral taxon 158 str. F0412]
          Length = 433

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 75/146 (51%), Gaps = 14/146 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  L+   GQ +A      F+ A     + +  +LF GP G GKTTLA ++A+    +
Sbjct: 20  MRPTKLDHLYGQEKAVGK-GTFLRAM-VEKDTIPSMLFYGPCGTGKTTLAGIIAKMSNSH 77

Query: 82  FRSTSGPVIAKAGDLAALLTN-------LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F + +    A  G+L  ++ +       L+ R +LF+DEIHR +   +++L P +ED  +
Sbjct: 78  FVNLNA-TNAGIGELRTIIEDARKRVRSLQQRTILFLDEIHRFNKSQQDVLLPCVEDGTI 136

Query: 135 DLMVGEGPSARSVKIN---LSRFTLI 157
            +++G        ++N   LSR  LI
Sbjct: 137 -ILIGATTENPFFEVNRPLLSRLRLI 161


>gi|118617371|ref|YP_905703.1| recombination factor protein RarA [Mycobacterium ulcerans Agy99]
 gi|118569481|gb|ABL04232.1| conserved alanine, valine and leucine rich protein [Mycobacterium
           ulcerans Agy99]
          Length = 452

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 91/187 (48%), Gaps = 38/187 (20%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP +L+E  GQ   +   + L+  +E +      +  V+  GPPG GKTTLA +++   
Sbjct: 35  MRPESLDEVVGQGHLLAPGAPLRRLVEGS-----GVASVILYGPPGSGKTTLAALISHAT 89

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           G  F + S  + A   D+ A++          ++ VLFIDE+HR S   ++ L  A+E+ 
Sbjct: 90  GRRFEALSA-LSAGVKDVRAVIETARQVLRRGEQTVLFIDEVHRFSKTQQDALLSAVENR 148

Query: 133 QLDLMVG--EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
            + L+    E PS          F+++A          PL  R  I ++L+    ED++ 
Sbjct: 149 VVLLVAATTENPS----------FSVVA----------PLLSRSLI-LQLHPLGAEDIRA 187

Query: 191 IVQRGAK 197
           +VQR A+
Sbjct: 188 VVQRAAQ 194


>gi|313608683|gb|EFR84519.1| recombination factor protein RarA [Listeria monocytogenes FSL
           F2-208]
          Length = 427

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 4/130 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L+E  GQ       K+     KA+   L  ++  GPPG+GKT++A  +A      
Sbjct: 10  MRPKALDEIVGQTHLVGKDKIIYRMVKAKQ--LSSMILYGPPGIGKTSIASAIAGSTKYA 67

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR+ +     K   ++ A    +    +L +DE+HRL    ++ L P +E   + +++G 
Sbjct: 68  FRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQDFLLPLLESGAI-ILIGA 126

Query: 141 GPSARSVKIN 150
             S   + IN
Sbjct: 127 TTSNPYIAIN 136


>gi|255731133|ref|XP_002550491.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
 gi|240132448|gb|EER32006.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
          Length = 698

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 65/119 (54%), Gaps = 16/119 (13%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL++F GQ +       L+  I++     + +   L  G PG+GKT+LA+++A+  
Sbjct: 166 LRPKTLDDFFGQEKLLGKDGALRNMIQS-----DIIPSFLLWGVPGIGKTSLARIIAKNS 220

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAME 130
              F   SG + + A +L  +    E+       R +LF+DEIHR +  V+++L P +E
Sbjct: 221 RCKFVELSG-IDSNAKNLKEVFLQAENHKKLTGQRTILFLDEIHRFNKAVQDLLLPVIE 278


>gi|226224115|ref|YP_002758222.1| hypothetical protein Lm4b_01524 [Listeria monocytogenes Clip81459]
 gi|225876577|emb|CAS05286.1| Hypothetical protein of unknown function [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
          Length = 427

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 4/130 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L+E  GQ       K+     KA+   L  ++  GPPG+GKT++A  +A      
Sbjct: 10  MRPKALDEIVGQTHLVGKDKIIYRMVKAKQ--LSSMILYGPPGIGKTSIASAIAGSTKYA 67

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR+ +     K   ++ A    +    +L +DE+HRL    ++ L P +E   + +++G 
Sbjct: 68  FRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQDFLLPLLESGAI-ILIGA 126

Query: 141 GPSARSVKIN 150
             S   + IN
Sbjct: 127 TTSNPYIAIN 136


>gi|217967181|ref|YP_002352687.1| ATPase AAA [Dictyoglomus turgidum DSM 6724]
 gi|217336280|gb|ACK42073.1| AAA ATPase central domain protein [Dictyoglomus turgidum DSM 6724]
          Length = 431

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 69/135 (51%), Gaps = 8/135 (5%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD++  L +  +  +     +RPRTLEEF G  E     K F+  A  +   L  ++  G
Sbjct: 1   MDKQERLFKEDNSYEPLSFRMRPRTLEEFLG-AEDIIGEKSFLRKAINKG-YLPSLIIYG 58

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLT---NLE---DRDVLFIDEIH 115
           PPG GKTTL+ ++A+ +   F   +  ++       AL     NLE    R VLF+DEIH
Sbjct: 59  PPGSGKTTLSVLLAKAINAEFIELNAAIVGVQELKEALQKAKRNLELYNKRTVLFLDEIH 118

Query: 116 RLSIIVEEILYPAME 130
             + + +++L P +E
Sbjct: 119 HFNKLQQDVLLPFVE 133


>gi|116624471|ref|YP_826627.1| recombination factor protein RarA [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116227633|gb|ABJ86342.1| Recombination protein MgsA [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 434

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 92/209 (44%), Gaps = 32/209 (15%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP +L+E+ GQ       K      +   + L  ++  GPPG+GKTTLA ++A+     
Sbjct: 22  MRPTSLDEYIGQDHILGPGKPL--RRQIERDELTSIILWGPPGVGKTTLAHLIAKVTKCE 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME--DFQ 133
           F   S  V++   ++ A++ + E       R +LF+DEIHR +   ++   P +E  D  
Sbjct: 80  FIPFSA-VLSGMKEIKAVMVDAEKLRRLGRRTILFVDEIHRFNKAQQDAFLPYVERGDII 138

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           L     E PS   +   LSR  + A                     L  + + ++ T+++
Sbjct: 139 LIGATTENPSFEVIAALLSRSRVYA---------------------LRAFTVPEIVTMLK 177

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
           R   +  L  +D+   +I + S G  R A
Sbjct: 178 RALPVLHLQASDDLLEQIGIYSNGDGRQA 206


>gi|152978774|ref|YP_001344403.1| recombination factor protein RarA [Actinobacillus succinogenes
           130Z]
 gi|150840497|gb|ABR74468.1| AAA ATPase central domain protein [Actinobacillus succinogenes
           130Z]
          Length = 447

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 76/155 (49%), Gaps = 18/155 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL+E+ GQ   +     L+  IE+  A +     ++  GPPG GKTTLA+++A  +
Sbjct: 20  MRPRTLDEYCGQQHLIGQGKPLRRAIESGHAHS-----MILWGPPGTGKTTLAEIIAYRI 74

Query: 79  GVNFRS----TSGPVIAKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMEDFQ 133
                     TSG    +     A    L DR  +LF+DE+HR +   ++   P +ED  
Sbjct: 75  NAEVERLSAVTSGVKDIREAIERAKRNRLADRQTILFVDEVHRFNKSQQDAFLPHIEDGT 134

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           + + +G      S ++N      + + TRV +L +
Sbjct: 135 I-IFIGATTENPSFELN----NALLSRTRVYILKS 164


>gi|330958181|gb|EGH58441.1| recombination factor protein RarA [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 440

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 71/135 (52%), Gaps = 9/135 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LR   L+E+ GQ    ++ K   EA +    AL  ++F GPPG+GKTTLA+++A+    +
Sbjct: 17  LRATNLDEYVGQEHVLAHGKPLREALEQ--GALHSMIFWGPPGVGKTTLARLLAKVSDAH 74

Query: 82  FRSTSGPV-----IAKAGDLAALLT-NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F + S  +     I +A ++A         R +LF+DE+HR +   ++   P +ED  L 
Sbjct: 75  FETVSAVLAGVKEIRQAVEVAKQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVEDGTL- 133

Query: 136 LMVGEGPSARSVKIN 150
           + +G      S ++N
Sbjct: 134 IFIGATTENPSFELN 148


>gi|254994482|ref|ZP_05276672.1| recombination factor protein RarA [Listeria monocytogenes FSL
           J2-064]
          Length = 227

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 4/130 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L+E  GQ       K+     KA+   L  ++  GPPG+GKT++A  +A      
Sbjct: 10  MRPKALDEIVGQTHLVGKDKIIYRMVKAKQ--LSSMILYGPPGIGKTSIASAIAGSTKYA 67

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR+ +     K   ++ A    +    +L +DE+HRL    ++ L P +E   + +++G 
Sbjct: 68  FRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQDFLLPLLESGAI-ILIGA 126

Query: 141 GPSARSVKIN 150
             S   + IN
Sbjct: 127 TTSNPYIAIN 136


>gi|325282636|ref|YP_004255177.1| AAA ATPase central domain-containing protein [Deinococcus
           proteolyticus MRP]
 gi|324314445|gb|ADY25560.1| AAA ATPase central domain protein [Deinococcus proteolyticus MRP]
          Length = 429

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/130 (36%), Positives = 64/130 (49%), Gaps = 11/130 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPRT+ E  GQ       K       +    L  ++  GPPG+GKTTLA++VA E+G +
Sbjct: 14  LRPRTVAEVVGQTHLLGPGKPLTRLLNS--GRLPSLILWGPPGVGKTTLARLVAGEVGSH 71

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F   S  V A   D+   +   E R       VLF+DEIHR +   ++ L P +E   L 
Sbjct: 72  FIGLSA-VSAGVKDVREAVLEAEARRGRGQKTVLFLDEIHRFNKAQQDALLPHVESGLLT 130

Query: 136 LM--VGEGPS 143
           L+    E PS
Sbjct: 131 LIGATTENPS 140


>gi|182439821|ref|YP_001827540.1| recombination factor protein RarA [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|178468337|dbj|BAG22857.1| putative ATP/GTP-binding protein [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 459

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 62/127 (48%), Gaps = 11/127 (8%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPR L+E  GQ   ++  S L+  +            V+  GPPG GKTTLA VV++  
Sbjct: 27  MRPRVLDEVVGQQHLLKPGSPLRRLVGEGGGGPAGASSVILWGPPGTGKTTLAYVVSKAT 86

Query: 79  GVNFRSTSGPVIAKAGDLAALLTN-------LEDRDVLFIDEIHRLSIIVEEILYPAMED 131
              F   S  + A   ++ A++ +            VLF+DEIHR S   ++ L PA+E+
Sbjct: 87  NKRFVELSA-ITAGVKEVRAVIESARRATGGFGKETVLFLDEIHRFSKAQQDSLLPAVEN 145

Query: 132 FQLDLMV 138
             + L+ 
Sbjct: 146 RWVTLIA 152


>gi|90021340|ref|YP_527167.1| recombination factor protein RarA [Saccharophagus degradans 2-40]
 gi|89950940|gb|ABD80955.1| Recombination protein MgsA / PAS/PAC sensor signal transduction
           histidine kinase [Saccharophagus degradans 2-40]
          Length = 444

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 73/136 (53%), Gaps = 11/136 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRTL+E+ GQ       K  +  A  R +    +L+ GPPG+GKT+LA+++A E+  +
Sbjct: 20  MRPRTLKEYMGQTHLLGKGKP-LRLALERGQIHSMILW-GPPGVGKTSLARLLANEIQGH 77

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F + S  V++   ++ A +   E +        VLF+DE+HR +   ++   P +ED  +
Sbjct: 78  FIAISA-VLSGVKEIRAAVAEAEQQRNMYGRTTVLFVDEVHRFNKSQQDAFLPYVEDGTV 136

Query: 135 DLMVGEGPSARSVKIN 150
            + VG      S ++N
Sbjct: 137 -VFVGATTENPSFEVN 151


>gi|46907742|ref|YP_014131.1| recombination factor protein RarA [Listeria monocytogenes serotype
           4b str. F2365]
 gi|47094362|ref|ZP_00232057.1| ATPase, AAA family domain protein [Listeria monocytogenes str. 4b
           H7858]
 gi|46881011|gb|AAT04308.1| ATPase, AAA family domain protein [Listeria monocytogenes serotype
           4b str. F2365]
 gi|47017260|gb|EAL08098.1| ATPase, AAA family domain protein [Listeria monocytogenes str. 4b
           H7858]
 gi|328465552|gb|EGF36781.1| recombination factor protein RarA [Listeria monocytogenes 1816]
          Length = 427

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 4/130 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L+E  GQ       K+     KA+   L  ++  GPPG+GKT++A  +A      
Sbjct: 10  MRPKALDEIVGQTHLVGKDKIIYRMVKAKQ--LSSMILYGPPGIGKTSIASAIAGSTKYA 67

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR+ +     K   ++ A    +    +L +DE+HRL    ++ L P +E   + +++G 
Sbjct: 68  FRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQDFLLPLLESGAI-ILIGA 126

Query: 141 GPSARSVKIN 150
             S   + IN
Sbjct: 127 TTSNPYIAIN 136


>gi|240170720|ref|ZP_04749379.1| recombination factor protein RarA [Mycobacterium kansasii ATCC
           12478]
          Length = 446

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 74/143 (51%), Gaps = 17/143 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP +L+E  GQ   + A S L+  +E +      +  V+  GPPG GKTTLA +V++  
Sbjct: 31  MRPASLDEVVGQDHLLAAGSPLRRLVEGS-----GVASVILYGPPGSGKTTLAALVSQAT 85

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           G  F + S  + A   D+ A++          ++ VLFIDE+HR S   ++ L  A+E+ 
Sbjct: 86  GRRFEALSA-LSAGVKDVRAVIEGARRGLLAGEQTVLFIDEVHRFSKTQQDALLSAVENR 144

Query: 133 QLDLMVG--EGPSARSVKINLSR 153
            + L+    E PS   V   LSR
Sbjct: 145 VVLLVAATTENPSFAVVAPLLSR 167


>gi|227505015|ref|ZP_03935064.1| crossover junction endodeoxyribonuclease [Corynebacterium striatum
           ATCC 6940]
 gi|227198379|gb|EEI78427.1| crossover junction endodeoxyribonuclease [Corynebacterium striatum
           ATCC 6940]
          Length = 416

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/133 (33%), Positives = 71/133 (53%), Gaps = 17/133 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP++L+E  GQ   +E    L+  IE +    EA   V+  GPPG GKTT+A ++A+ +
Sbjct: 1   MRPQSLDEVLGQGHLLEKGKPLRRLIEGS---GEA--SVILYGPPGTGKTTIASLIAKAI 55

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDF 132
           G NF   S  + +    +  ++T+         R VLFIDE+HR S   ++ L  A+E+ 
Sbjct: 56  GQNFVGLSA-LDSGVKQVREVITHARQELIHGRRTVLFIDEVHRFSKTQQDALLAAVENR 114

Query: 133 QLDLMVG--EGPS 143
            + L+    E PS
Sbjct: 115 TVLLVAATTENPS 127


>gi|152966979|ref|YP_001362763.1| recombination factor protein RarA [Kineococcus radiotolerans
           SRS30216]
 gi|151361496|gb|ABS04499.1| AAA ATPase central domain protein [Kineococcus radiotolerans
           SRS30216]
          Length = 456

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/120 (35%), Positives = 61/120 (50%), Gaps = 11/120 (9%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPR+L+E  GQ   ++  S L+               V+  GPPG GKTTLA V+AR  
Sbjct: 25  MRPRSLDEVVGQQHLLQPGSPLRRLAADGDLGRAGPASVILWGPPGTGKTTLASVLARSG 84

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNL-EDRD------VLFIDEIHRLSIIVEEILYPAMED 131
           G  F   S  V A   D+  ++    +DRD      VLF+DEIHR +   ++ L P +E+
Sbjct: 85  GRKFAELSA-VTAGVKDVRRVVEAARDDRDLYRRQTVLFLDEIHRFTKAQQDALLPGVEN 143


>gi|47097211|ref|ZP_00234775.1| ATPase, AAA family domain protein [Listeria monocytogenes str. 1/2a
           F6854]
 gi|224499826|ref|ZP_03668175.1| recombination factor protein RarA [Listeria monocytogenes Finland
           1988]
 gi|254898320|ref|ZP_05258244.1| recombination factor protein RarA [Listeria monocytogenes J0161]
 gi|254912188|ref|ZP_05262200.1| ATPase [Listeria monocytogenes J2818]
 gi|254936516|ref|ZP_05268213.1| ATPase [Listeria monocytogenes F6900]
 gi|284801904|ref|YP_003413769.1| recombination factor protein RarA [Listeria monocytogenes 08-5578]
 gi|284995046|ref|YP_003416814.1| recombination factor protein RarA [Listeria monocytogenes 08-5923]
 gi|47014425|gb|EAL05394.1| ATPase, AAA family domain protein [Listeria monocytogenes str. 1/2a
           F6854]
 gi|258609110|gb|EEW21718.1| ATPase [Listeria monocytogenes F6900]
 gi|284057466|gb|ADB68407.1| recombination factor protein RarA [Listeria monocytogenes 08-5578]
 gi|284060513|gb|ADB71452.1| recombination factor protein RarA [Listeria monocytogenes 08-5923]
 gi|293590161|gb|EFF98495.1| ATPase [Listeria monocytogenes J2818]
          Length = 427

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 4/130 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L+E  GQ       K+     KA+   L  ++  GPPG+GKT++A  +A      
Sbjct: 10  MRPKALDEIVGQTHLVGKDKIIYRMVKAKQ--LSSMILYGPPGIGKTSIASAIAGSTKYA 67

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR+ +     K   ++ A    +    +L +DE+HRL    ++ L P +E   + +++G 
Sbjct: 68  FRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQDFLLPLLESGAI-ILIGA 126

Query: 141 GPSARSVKIN 150
             S   + IN
Sbjct: 127 TTSNPYIAIN 136


>gi|330965615|gb|EGH65875.1| recombination factor protein RarA [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 440

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 71/135 (52%), Gaps = 9/135 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LR   L+E+ GQ    ++ K   EA +    AL  ++F GPPG+GKTTLA+++A+    +
Sbjct: 17  LRATNLDEYVGQEHVLAHGKPLREALEQ--GALHSMIFWGPPGVGKTTLARLLAKVSDAH 74

Query: 82  FRSTSGPV-----IAKAGDLAALLT-NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F + S  +     I +A ++A         R +LF+DE+HR +   ++   P +ED  L 
Sbjct: 75  FETVSAVLAGVKEIRQAVEVAKQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVEDGTL- 133

Query: 136 LMVGEGPSARSVKIN 150
           + +G      S ++N
Sbjct: 134 IFIGATTENPSFELN 148


>gi|290893873|ref|ZP_06556851.1| recombination factor protein RarA [Listeria monocytogenes FSL
           J2-071]
 gi|290556590|gb|EFD90126.1| recombination factor protein RarA [Listeria monocytogenes FSL
           J2-071]
          Length = 427

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 4/130 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L+E  GQ       K+     KA+   L  ++  GPPG+GKT++A  +A      
Sbjct: 10  MRPKALDEIVGQTHLVGKDKIIYRMVKAKQ--LSSMILYGPPGIGKTSIASAIAGSTKYA 67

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR+ +     K   ++ A    +    +L +DE+HRL    ++ L P +E   + +++G 
Sbjct: 68  FRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQDFLLPLLESGAI-ILIGA 126

Query: 141 GPSARSVKIN 150
             S   + IN
Sbjct: 127 TTSNPYIAIN 136


>gi|254824427|ref|ZP_05229428.1| recombination factor protein RarA [Listeria monocytogenes FSL
           J1-194]
 gi|293593663|gb|EFG01424.1| recombination factor protein RarA [Listeria monocytogenes FSL
           J1-194]
          Length = 427

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 4/130 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L+E  GQ       K+     KA+   L  ++  GPPG+GKT++A  +A      
Sbjct: 10  MRPKALDEIVGQTHLVGKDKIIYRMVKAKQ--LSSMILYGPPGIGKTSIASAIAGSTKYA 67

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR+ +     K   ++ A    +    +L +DE+HRL    ++ L P +E   + +++G 
Sbjct: 68  FRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQDFLLPLLESGAI-ILIGA 126

Query: 141 GPSARSVKIN 150
             S   + IN
Sbjct: 127 TTSNPYIAIN 136


>gi|227496429|ref|ZP_03926715.1| recombination factor protein RarA [Actinomyces urogenitalis DSM
           15434]
 gi|226834048|gb|EEH66431.1| recombination factor protein RarA [Actinomyces urogenitalis DSM
           15434]
          Length = 455

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 73/147 (49%), Gaps = 17/147 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPR+L E  GQ   +   + L   +EA +     L  ++  GPPG GKTT+A+++A   
Sbjct: 29  LRPRSLAEVVGQDHLLAPEAPLGRMVEAGR-----LSSIILWGPPGCGKTTIARLLASGT 83

Query: 79  GVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           G+ F   S        + K    AA    +  R +LF+DEIHR +   ++   P +ED  
Sbjct: 84  GLVFEQVSATFSGVAELRKVFSAAAQRRQIGQRTLLFVDEIHRFNRAQQDSFLPYVEDGT 143

Query: 134 LDLMVGEGPSARSVKIN---LSRFTLI 157
           + ++VG      S ++N   LSR  ++
Sbjct: 144 V-VLVGATTENPSFELNGALLSRCQVL 169


>gi|217964339|ref|YP_002350017.1| ATPase, AAA family domain protein [Listeria monocytogenes HCC23]
 gi|217333609|gb|ACK39403.1| ATPase, AAA family domain protein [Listeria monocytogenes HCC23]
 gi|307571095|emb|CAR84274.1| ATPase family protein [Listeria monocytogenes L99]
          Length = 427

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 4/130 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L+E  GQ       K+     KA+   L  ++  GPPG+GKT++A  +A      
Sbjct: 10  MRPKALDEIVGQTHLVGKDKIIYRMVKAKQ--LSSMILYGPPGIGKTSIASAIAGSTKYA 67

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR+ +     K   ++ A    +    +L +DE+HRL    ++ L P +E   + +++G 
Sbjct: 68  FRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQDFLLPLLESGAI-ILIGA 126

Query: 141 GPSARSVKIN 150
             S   + IN
Sbjct: 127 TTSNPYIAIN 136


>gi|330955484|gb|EGH55744.1| recombination factor protein RarA [Pseudomonas syringae Cit 7]
          Length = 207

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 71/135 (52%), Gaps = 9/135 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LR   L+E+ GQ    ++ K   EA +    AL  ++F GPPG+GKTTLA+++A+    +
Sbjct: 17  LRATNLDEYVGQEHVLAHGKPLREALEQ--GALHSMIFWGPPGVGKTTLAKLLAKVSDAH 74

Query: 82  FRSTSGPV-----IAKAGDLA-ALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F + S  +     I +A ++A         R +LF+DE+HR +   ++   P +ED  L 
Sbjct: 75  FETVSAVLAGVKEIRQAVEVARQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVEDGTL- 133

Query: 136 LMVGEGPSARSVKIN 150
           + +G      S ++N
Sbjct: 134 IFIGATTENPSFELN 148


>gi|326780485|ref|ZP_08239750.1| AAA ATPase central domain protein [Streptomyces cf. griseus
           XylebKG-1]
 gi|326660818|gb|EGE45664.1| AAA ATPase central domain protein [Streptomyces cf. griseus
           XylebKG-1]
          Length = 471

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 62/127 (48%), Gaps = 11/127 (8%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPR L+E  GQ   ++  S L+  +            V+  GPPG GKTTLA VV++  
Sbjct: 42  MRPRVLDEVVGQQHLLKPGSPLRRLVGKGGGGPAGASSVILWGPPGTGKTTLAYVVSKAT 101

Query: 79  GVNFRSTSGPVIAKAGDLAALLTN-------LEDRDVLFIDEIHRLSIIVEEILYPAMED 131
              F   S  + A   ++ A++ +            VLF+DEIHR S   ++ L PA+E+
Sbjct: 102 NKRFVELSA-ITAGVKEVRAVIESARRATGGFGKETVLFLDEIHRFSKAQQDSLLPAVEN 160

Query: 132 FQLDLMV 138
             + L+ 
Sbjct: 161 RWVTLIA 167


>gi|304391485|ref|ZP_07373427.1| replication-associated recombination protein A [Ahrensia sp.
           R2A130]
 gi|303295714|gb|EFL90072.1| replication-associated recombination protein A [Ahrensia sp.
           R2A130]
          Length = 440

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 69/143 (48%), Gaps = 17/143 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL+E  GQ   +     L+  +EA      +L  ++F GPPG GKTT+A+++A E 
Sbjct: 26  LRPKTLDEVVGQDHLLGENGALRRMLEAP-----SLGSMVFWGPPGSGKTTVARLLADEG 80

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
             +F   S  +     DL  +            R +LF+DEIHR +   ++   P MED 
Sbjct: 81  EHHFEQISA-IFTGVADLKKVFEQARIRAGNGRRTLLFVDEIHRFNRAQQDSFLPVMEDG 139

Query: 133 QLDLM--VGEGPSARSVKINLSR 153
            + L+    E PS       LSR
Sbjct: 140 TITLIGATTENPSFELNAAVLSR 162


>gi|330881213|gb|EGH15362.1| recombination factor protein RarA [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 195

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 71/135 (52%), Gaps = 9/135 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LR   L+E+ GQ    ++ K   EA +    AL  ++F GPPG+GKTTLA+++A+    +
Sbjct: 17  LRATNLDEYVGQEHVLAHGKPLREALEQ--GALHSMIFWGPPGVGKTTLARLLAKVSDAH 74

Query: 82  FRSTSGPV-----IAKAGDLAALLT-NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F + S  +     I +A ++A         R +LF+DE+HR +   ++   P +ED  L 
Sbjct: 75  FETVSAVLAGVKEIRQAVEVAKQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVEDGTL- 133

Query: 136 LMVGEGPSARSVKIN 150
           + +G      S ++N
Sbjct: 134 IFIGATTENPSFELN 148


>gi|312890548|ref|ZP_07750084.1| AAA ATPase central domain protein [Mucilaginibacter paludis DSM
           18603]
 gi|311297006|gb|EFQ74139.1| AAA ATPase central domain protein [Mucilaginibacter paludis DSM
           18603]
          Length = 426

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/143 (34%), Positives = 71/143 (49%), Gaps = 16/143 (11%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L+E+ GQ        V  +A ++ +  L  ++F GPPG+GKTTLA ++++ L   
Sbjct: 11  MRPKNLDEYVGQKHLVGPGAVLRKAIESGS--LPSMIFWGPPGVGKTTLAYIISQSLDRP 68

Query: 82  FRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           F S S           VI KA  L      L    VLFIDEIHR S   ++ L  A+E  
Sbjct: 69  FFSLSAINSGVKDVREVIEKASLLKQQDATLP---VLFIDEIHRFSKSQQDSLLGAVERG 125

Query: 133 QLDLM--VGEGPSARSVKINLSR 153
            + L+    E PS   +   LSR
Sbjct: 126 IVTLIGATTENPSFEVISALLSR 148


>gi|296129660|ref|YP_003636910.1| AAA ATPase central domain protein [Cellulomonas flavigena DSM
           20109]
 gi|296021475|gb|ADG74711.1| AAA ATPase central domain protein [Cellulomonas flavigena DSM
           20109]
          Length = 473

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/136 (36%), Positives = 68/136 (50%), Gaps = 15/136 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEAL--DHVLFVGPPGLGKTTLAQVVAR 76
           +RPRTL E  GQ   +   S L+  +E A   A       V+  GPPG GKTTLA +VA 
Sbjct: 27  MRPRTLAEVAGQGHLLVPGSPLRRLVEPADDAARRAAPSSVVLWGPPGTGKTTLAYLVAS 86

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAM 129
             G  F   S  V A   D+ A++ +   R        VLFIDE+HR +   ++ L P++
Sbjct: 87  TSGRRFVELSA-VTAGVKDVRAVVEDARRRLAADGSETVLFIDEVHRFTKAQQDALLPSV 145

Query: 130 EDFQLDLMVG--EGPS 143
           E+  + L+    E PS
Sbjct: 146 ENRWVTLVAATTENPS 161


>gi|28198581|ref|NP_778895.1| recombination factor protein RarA [Xylella fastidiosa Temecula1]
 gi|182681262|ref|YP_001829422.1| recombination factor protein RarA [Xylella fastidiosa M23]
 gi|28056665|gb|AAO28544.1| ATPase [Xylella fastidiosa Temecula1]
 gi|182631372|gb|ACB92148.1| AAA ATPase central domain protein [Xylella fastidiosa M23]
 gi|307579712|gb|ADN63681.1| recombination factor protein RarA [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 453

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 72/269 (26%), Positives = 121/269 (44%), Gaps = 39/269 (14%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKA--RAEALDHV---LFVGPPGLGKTTLAQVVAR 76
           +RPRTL E  GQ       K  ++  +A  RA A  HV   +  GPPG GKTTL+ ++A 
Sbjct: 27  MRPRTLHEMVGQ-------KRLLDPDRALHRAVASGHVHSMILWGPPGCGKTTLSLLLAH 79

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130
            +   FRS S  V++   ++  +L +         R VLF+DE+HR + + ++   P +E
Sbjct: 80  YIDAEFRSVSA-VLSGLPEVRQILADAAQRFSEGRRTVLFVDEVHRFNKMQQDAFLPHIE 138

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
              + + VG      S ++N    + + +  RV +L         + ++    + E    
Sbjct: 139 RGSI-IFVGATTENPSFELN----SALLSRCRVHVLEAVSSQDIVVALQRALQDTE---- 189

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
              RG     + V+  +  EIA  + G  R A  LL      AE+A  + IT ++    L
Sbjct: 190 ---RGLGGQKIEVSQASLLEIAKAADGDVRRALTLLEIA---AELAQDEQITADLLSQVL 243

Query: 251 LRLA--IDKMG---FDQLDLRYLTMIARN 274
              +   DK G   +DQ+   + ++ + N
Sbjct: 244 ADRSRRFDKRGEQFYDQISALHKSVRSSN 272


>gi|254931449|ref|ZP_05264808.1| recombination factor protein RarA [Listeria monocytogenes HPB2262]
 gi|300764820|ref|ZP_07074810.1| ATPase [Listeria monocytogenes FSL N1-017]
 gi|293583000|gb|EFF95032.1| recombination factor protein RarA [Listeria monocytogenes HPB2262]
 gi|300514496|gb|EFK41553.1| ATPase [Listeria monocytogenes FSL N1-017]
 gi|332311956|gb|EGJ25051.1| hypothetical AAA domain-containing protein YrvN [Listeria
           monocytogenes str. Scott A]
          Length = 427

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 4/130 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L+E  GQ       K+     KA+   L  ++  GPPG+GKT++A  +A      
Sbjct: 10  MRPKALDEIVGQTHLVGKDKIIYRMVKAKQ--LSSMILYGPPGIGKTSIASAIAGSTKYA 67

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR+ +     K   ++ A    +    +L +DE+HRL    ++ L P +E   + +++G 
Sbjct: 68  FRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQDFLLPLLESGAI-ILIGA 126

Query: 141 GPSARSVKIN 150
             S   + IN
Sbjct: 127 TTSNPYIAIN 136


>gi|237800567|ref|ZP_04589028.1| recombination factor protein RarA [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331023427|gb|EGI03484.1| recombination factor protein RarA [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 440

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 70/136 (51%), Gaps = 11/136 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LR   L+E+ GQ    ++ K   EA +    AL  ++F GPPG+GKTTLA+++A+    +
Sbjct: 17  LRATNLDEYVGQEHVLAHGKPLREALEQ--GALHSMIFWGPPGVGKTTLARLLAKVSDAH 74

Query: 82  FRSTSGPVIAKAGDLAALLT-------NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F + S  V+A   ++   +            R +LF+DE+HR +   ++   P +ED  L
Sbjct: 75  FETVSA-VLAGVKEIRQAVEVARQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVEDGTL 133

Query: 135 DLMVGEGPSARSVKIN 150
            + +G      S ++N
Sbjct: 134 -IFIGATTENPSFELN 148


>gi|118473523|ref|YP_887339.1| recombination factor protein RarA [Mycobacterium smegmatis str. MC2
           155]
 gi|118174810|gb|ABK75706.1| AAA ATPase, central region [Mycobacterium smegmatis str. MC2 155]
          Length = 447

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 74/143 (51%), Gaps = 17/143 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP  L+E  GQ   ++A S L+  +E + A +     V+  GPPG GKTTLA ++++  
Sbjct: 35  MRPAGLDEVVGQSHLLQAGSPLRRLVEGSGAAS-----VILYGPPGTGKTTLASLISQAT 89

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           G  F + S  + A   ++ A++           + VLFIDE+HR S   ++ L  A+E+ 
Sbjct: 90  GRRFEALSA-LTAGVKEVRAVIDTARRAAVHGQQTVLFIDEVHRFSKTQQDALLAAVENR 148

Query: 133 QLDLMVG--EGPSARSVKINLSR 153
            + L+    E PS   V   LSR
Sbjct: 149 VVLLVAATTENPSFSVVAPLLSR 171


>gi|145219908|ref|YP_001130617.1| recombination factor protein RarA [Prosthecochloris vibrioformis
           DSM 265]
 gi|145206072|gb|ABP37115.1| Recombination protein MgsA [Chlorobium phaeovibrioides DSM 265]
          Length = 445

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 61/117 (52%), Gaps = 13/117 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPR+L++  GQ   +     L+ F+   +     L  ++F GPPG GKTTLA++ A  L
Sbjct: 31  VRPRSLDDMRGQEHLLGPDGPLRRFLSGGQ-----LPSMIFWGPPGTGKTTLAEICASAL 85

Query: 79  GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           G  F + S        + +A   AA      +R +LFIDEIHR +   ++ L  A+E
Sbjct: 86  GFRFETLSAIDSGVKEVRRALSDAASARERGERTILFIDEIHRFNKAQQDTLLHAIE 142


>gi|227833218|ref|YP_002834925.1| recombination factor protein [Corynebacterium aurimucosum ATCC
           700975]
 gi|262184204|ref|ZP_06043625.1| recombination factor protein RarA [Corynebacterium aurimucosum ATCC
           700975]
 gi|227454234|gb|ACP32987.1| recombination factor protein [Corynebacterium aurimucosum ATCC
           700975]
          Length = 451

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/133 (34%), Positives = 71/133 (53%), Gaps = 17/133 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP++L+E  GQ   +E  + L+  +E +    EA   V+  GPPG GKTTLA ++A  L
Sbjct: 35  MRPQSLDEVVGQKHLLEPGTPLRRLVEGS---GEA--SVILYGPPGTGKTTLASLIASSL 89

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           G NF   S  + +    +  ++T+         R VLFIDE+HR S   ++ L  A+E+ 
Sbjct: 90  GDNFIGLSA-LDSGVKQVREVITHARRELIEGRRTVLFIDEVHRFSKTQQDALLAAVENR 148

Query: 133 QLDLMVG--EGPS 143
            + L+    E PS
Sbjct: 149 TVLLVAATTENPS 161


>gi|319442139|ref|ZP_07991295.1| recombination factor protein RarA [Corynebacterium variabile DSM
           44702]
          Length = 457

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 70/144 (48%), Gaps = 11/144 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRTL+E  GQ                R E+   V+  GPPG GKTT+A ++A   G  
Sbjct: 41  MRPRTLDEVVGQSHVLGESSPLRRLIDGRGES--SVILYGPPGTGKTTVASLIAGGSGRR 98

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F + S  + +   ++ +++ +   R       VLFIDE+HR S   ++ L  A+E+  + 
Sbjct: 99  FEALSA-LNSGVKEVRSVIADARRRLADGIPTVLFIDEVHRFSKTQQDALLSAVENRTVL 157

Query: 136 LMVG--EGPSARSVKINLSRFTLI 157
           L+    E PS   V   LSR  L+
Sbjct: 158 LVAATTENPSFSVVAPLLSRSLLV 181


>gi|294792127|ref|ZP_06757275.1| ATPase, AAA family [Veillonella sp. 6_1_27]
 gi|294457357|gb|EFG25719.1| ATPase, AAA family [Veillonella sp. 6_1_27]
          Length = 433

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 74/145 (51%), Gaps = 12/145 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR---EL 78
           +RP  L+   GQ +A      F+ A     + +  +LF GP G GKTTLA ++A+     
Sbjct: 20  MRPTKLDHLYGQEKAVGK-GTFLRAM-VEKDTIPSMLFYGPCGTGKTTLAGIIAKVSNSY 77

Query: 79  GVNFRSTS---GPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
            VN  +T+   G +     D    + +L+ R +LF+DEIHR +   +++L P +ED  + 
Sbjct: 78  FVNLNATNVGIGELRTIIEDARKRVRSLQQRTILFLDEIHRFNKSQQDVLLPCVEDGTI- 136

Query: 136 LMVGEGPSARSVKIN---LSRFTLI 157
           +++G        ++N   LSR  LI
Sbjct: 137 ILIGATTENPFFEVNRPLLSRLRLI 161


>gi|283478929|emb|CAY74845.1| Uncharacterized protein ycaJ [Erwinia pyrifoliae DSM 12163]
          Length = 428

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 65/129 (50%), Gaps = 9/129 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRTL E+ GQ    +  K    A +AR   L  ++  GPPG GKTTLA+++ R    +
Sbjct: 1   MRPRTLAEYIGQQHLLAAGKPLPRAIEARH--LHSMILWGPPGTGKTTLAEIIGRYGQAD 58

Query: 82  FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
                  TSG   I +A + A    +   R +LF+DE+HR +   ++   P +ED  +  
Sbjct: 59  VERISAVTSGVKEIREAIERARQNRHAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 118

Query: 137 M--VGEGPS 143
           +    E PS
Sbjct: 119 VGATTENPS 127


>gi|255325072|ref|ZP_05366178.1| recombination factor protein RarA [Corynebacterium
           tuberculostearicum SK141]
 gi|255297637|gb|EET76948.1| recombination factor protein RarA [Corynebacterium
           tuberculostearicum SK141]
          Length = 547

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 66/130 (50%), Gaps = 11/130 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L+E  GQ    +  K      +   EA   V+  GPPG GKTT+A ++A ++G N
Sbjct: 121 MRPQNLDEVVGQDHLLAPGKPLRRLVEGSGEA--SVILYGPPGTGKTTIASLIASQMGQN 178

Query: 82  FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F   S  + +    +  ++T+         R VLFIDE+HR S   ++ L  A+E+  + 
Sbjct: 179 FVGLSA-LDSGVKQVREVITHARQELIHGRRTVLFIDEVHRFSKTQQDALLAAVENRTVL 237

Query: 136 LMVG--EGPS 143
           L+    E PS
Sbjct: 238 LVAATTENPS 247


>gi|291087419|ref|ZP_06571936.1| replication-associated recombination protein A [Clostridium sp.
           M62/1]
 gi|291075102|gb|EFE12466.1| replication-associated recombination protein A [Clostridium sp.
           M62/1]
          Length = 484

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 70/140 (50%), Gaps = 16/140 (11%)

Query: 20  SLLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           S +RP +LEEF GQ         L+  IE  K     +  ++F GPPG+GKTTLA ++A 
Sbjct: 40  SRMRPESLEEFVGQSHLLGEGMLLRNLIERDK-----VSSMIFWGPPGVGKTTLAGIIAN 94

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130
                F + S  V +   ++  ++   E+      + V+F+DEIHR +   ++   P +E
Sbjct: 95  RTNAGFINFSA-VTSGIKEIREVMAKAEEARHRGMKTVVFVDEIHRFNKAQQDAFLPYVE 153

Query: 131 DFQLDLMVGEGPSARSVKIN 150
              + +++G      S +IN
Sbjct: 154 RGSI-ILIGATTENPSFEIN 172


>gi|299822828|ref|ZP_07054714.1| ATPase [Listeria grayi DSM 20601]
 gi|299816357|gb|EFI83595.1| ATPase [Listeria grayi DSM 20601]
          Length = 424

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 64/130 (49%), Gaps = 4/130 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP++L+E  GQ       K+     KA+   L  ++  GPPG+GKT++A  +A      
Sbjct: 10  MRPKSLDEIVGQTHLVGEGKIINRMVKAKQ--LSSMILYGPPGIGKTSIASAIAGSTKYA 67

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR+ +     K   ++ A    +    +L +DE+HRL    ++ L P +E   + +++G 
Sbjct: 68  FRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQDFLLPHLESGAI-ILIGA 126

Query: 141 GPSARSVKIN 150
             S   + IN
Sbjct: 127 TTSNPYIAIN 136


>gi|319407398|emb|CBI81049.1| ATPase, AAA family [Bartonella sp. 1-1C]
          Length = 439

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/206 (28%), Positives = 92/206 (44%), Gaps = 35/206 (16%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKAR---AEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPR+L E  GQ     N  +  E   +R   + +   ++F GPPG GKTT+A+++A E 
Sbjct: 24  MRPRSLHEMVGQ-----NHLIGAEGFLSRMVASGSFSSMIFWGPPGTGKTTVARLLALET 78

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDF 132
              F   S  +     +L  +      R       +LFIDEIHR +   ++   P MED 
Sbjct: 79  NFAFEQVSA-IFTGISELKKIFEVARSRLMSGCQTLLFIDEIHRFNRSQQDSFLPFMEDG 137

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            + ++VG      S ++N       A  +R  +LT    D             E L  ++
Sbjct: 138 TI-ILVGATTENPSFELN------AALLSRARVLTFRAHDN------------ESLDILL 178

Query: 193 QRGAKLTGLAVT-DEAACEIAMRSRG 217
           +R  K+ G ++  D+ A EI +R  G
Sbjct: 179 KRAEKVEGKSLPLDDHAREILIRISG 204


>gi|257485416|ref|ZP_05639457.1| recombination factor protein RarA [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 228

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 71/135 (52%), Gaps = 9/135 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LR   L+E+ GQ    ++ K   EA +  A  L  ++F GPPG+GKTTLA+++A+    +
Sbjct: 17  LRATNLDEYVGQEHVLAHGKPLREALEQGA--LHSMIFWGPPGVGKTTLARLLAKVSDAH 74

Query: 82  FRSTSGPV-----IAKAGDLAALLT-NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F + S  +     I +A ++A         R +LF+DE+HR +   ++   P +ED  L 
Sbjct: 75  FETVSAVLAGVKEIRQAVEVAKQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVEDGTL- 133

Query: 136 LMVGEGPSARSVKIN 150
           + +G      S ++N
Sbjct: 134 IFIGATTENPSFELN 148


>gi|330900604|gb|EGH32023.1| recombination factor protein RarA [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 440

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 70/136 (51%), Gaps = 11/136 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LR   L+E+ GQ    ++ K   EA +    AL  ++F GPPG+GKTTLA+++A+    +
Sbjct: 17  LRATNLDEYVGQEHVLAHGKPLREALEQ--GALHSMIFWGPPGVGKTTLARLLAKVSDAH 74

Query: 82  FRSTSGPVIAKAGDLAALLT-------NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F + S  V+A   ++   +            R +LF+DE+HR +   ++   P +ED  L
Sbjct: 75  FETVSA-VLAGVKEIRQAVEVARQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVEDGTL 133

Query: 135 DLMVGEGPSARSVKIN 150
            + +G      S ++N
Sbjct: 134 -IFIGATTENPSFELN 148


>gi|318057090|ref|ZP_07975813.1| recombination factor protein RarA [Streptomyces sp. SA3_actG]
 gi|318077863|ref|ZP_07985195.1| recombination factor protein RarA [Streptomyces sp. SA3_actF]
          Length = 447

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 63/127 (49%), Gaps = 11/127 (8%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL+E  GQ   + A S L+  +            V+  GPPG GKTTLA VV++  
Sbjct: 23  MRPRTLDEVVGQQHLLGAGSPLRRLVGEGDGGPAGASSVILWGPPGTGKTTLAYVVSKAT 82

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE------DRD-VLFIDEIHRLSIIVEEILYPAMED 131
              F   S  + A   ++  ++           +D VLF+DEIHR S   ++ L PA+E+
Sbjct: 83  NARFVELSA-ITAGVKEVRTVIDGARRASGGYGKDTVLFLDEIHRFSKAQQDSLLPAVEN 141

Query: 132 FQLDLMV 138
             + L+ 
Sbjct: 142 RWVTLIA 148


>gi|315038424|ref|YP_004031992.1| recombination factor protein RarA [Lactobacillus amylovorus GRL
           1112]
 gi|312276557|gb|ADQ59197.1| recombination factor protein RarA [Lactobacillus amylovorus GRL
           1112]
          Length = 420

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 57/110 (51%), Gaps = 2/110 (1%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  L+E  GQ E     K   +  + +      +L  GPPG GK++LA+++AR     
Sbjct: 11  MRPNNLKEIVGQQELLGKGKPLRQIIEQKVPI--SLLLWGPPGTGKSSLARIIARTNEYA 68

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
           F S +  +  KA  L  + T      VL IDEIHR++  +++ L P +E+
Sbjct: 69  FASFNASIDNKAKLLNIIDTYPHQTFVLLIDEIHRMTKTLQDFLLPYLEN 118


>gi|126724895|ref|ZP_01740738.1| ATPase, AAA family protein [Rhodobacterales bacterium HTCC2150]
 gi|126706059|gb|EBA05149.1| ATPase, AAA family protein [Rhodobacterales bacterium HTCC2150]
          Length = 438

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 78/156 (50%), Gaps = 27/156 (17%)

Query: 22  LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+ + E  GQ       + L V +EA     ++L  ++F GPPG+GKTT+A+++A  +
Sbjct: 25  LRPKQISEVIGQAHVLGPEAPLGVMLEA-----KSLSSLIFWGPPGVGKTTIARLLADHV 79

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAMEDF 132
            + F   S  + +   DL  +      R       +LF+DEIHR +   ++   P ME+ 
Sbjct: 80  DLAFVQISA-IFSGVADLKKVFQAATIRHQNGQGTLLFVDEIHRFNKAQQDGFLPYMENG 138

Query: 133 QLDLMVG---EGPS--------ARSVKINLSRFTLI 157
            + L+VG   E PS        +RS  + L R +LI
Sbjct: 139 TI-LLVGATTENPSFELNAALLSRSQVLVLERLSLI 173


>gi|117920496|ref|YP_869688.1| recombination factor protein RarA [Shewanella sp. ANA-3]
 gi|117612828|gb|ABK48282.1| Recombination protein MgsA [Shewanella sp. ANA-3]
          Length = 443

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 117/262 (44%), Gaps = 35/262 (13%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRT+ E+ GQ         L+  +EA +A +     ++  GPPG GKTTLA+++A   
Sbjct: 19  MRPRTIAEYIGQAHLLGEGQPLRQALEAGRAHS-----MMLWGPPGTGKTTLAELIAHYS 73

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAMED 131
             +    S  V +   D+ A +   +        R +LF+DE+HR +   ++   P +ED
Sbjct: 74  NAHVERISA-VTSGVKDIRAAIEQAQAVAQSRGQRTLLFVDEVHRFNKSQQDAFLPFIED 132

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
             + + +G      S +IN      + +  RV L+    QD          + I    T 
Sbjct: 133 GTV-IFIGATTENPSFEIN----NALLSRARVYLIKRLSQDEI-------VHIITQALTD 180

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
            +RG     L +  +   ++A    G  R A  LL  + D   VA   + T E+    L+
Sbjct: 181 PERGLGQRQLVMPTDVLNKLAQLCDGDARKALNLLELMSDM--VADGGSFTTEM----LV 234

Query: 252 RLAIDKM-GFDQLDLRYLTMIA 272
           ++A  ++ GFD+   ++  +I+
Sbjct: 235 QVAGHQVAGFDKNGDQFYDLIS 256


>gi|325001185|ref|ZP_08122297.1| recombination factor protein RarA [Pseudonocardia sp. P1]
          Length = 462

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/159 (35%), Positives = 84/159 (52%), Gaps = 23/159 (14%)

Query: 11  NVSQEDADISL-LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           +V + DA ++  +RPR+L+E  GQ   +E  + L+  +E   A +     VL  GPPG G
Sbjct: 23  SVPRPDAPLAARMRPRSLDEVVGQSELLEPGAPLRRLLEGGAAAS-----VLLYGPPGTG 77

Query: 67  KTTLAQVVARELGV--NFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRL 117
           KTTLA+++A   G   +F + S  + A   +L A++     R        VLFIDE+HR 
Sbjct: 78  KTTLARLMAGAGGAERHFVALSA-LSAGVKELRAVIEEARRRRDRSGTSTVLFIDEVHRF 136

Query: 118 SIIVEEILYPAMEDFQLDLMVG---EGPSARSVKINLSR 153
           S   ++ L  A+ED +L L+V    E PS   V   LSR
Sbjct: 137 SRTQQDALLGAVED-RLVLLVAATTENPSFSVVSPLLSR 174


>gi|89100968|ref|ZP_01173813.1| ATPase, AAA family domain protein [Bacillus sp. NRRL B-14911]
 gi|89084304|gb|EAR63460.1| ATPase, AAA family domain protein [Bacillus sp. NRRL B-14911]
          Length = 423

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 57/111 (51%), Gaps = 3/111 (2%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+++E+  GQ       K+     KAR   L  ++  GPPG+GKT++A  +A      
Sbjct: 10  MRPKSIEDIIGQEHLVGEGKIIYRMVKARQ--LSSMILYGPPGIGKTSIASAIAGSTQFA 67

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
           FR+ +     K   ++ A    +  + +L +DE+HRL    ++ L P +E+
Sbjct: 68  FRTLNAVTNNKKDMEVVAAEAKMSGKVILLLDEVHRLDKAKQDFLLPYLEN 118


>gi|303229442|ref|ZP_07316232.1| recombination factor protein RarA [Veillonella atypica
           ACS-134-V-Col7a]
 gi|303230800|ref|ZP_07317547.1| recombination factor protein RarA [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302514560|gb|EFL56555.1| recombination factor protein RarA [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302515978|gb|EFL57930.1| recombination factor protein RarA [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 434

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 75/146 (51%), Gaps = 14/146 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  L+   GQ +A      F+ A     + +  +LF GP G GKTTLA ++A+    +
Sbjct: 20  MRPTELDHLYGQEQAVGK-GTFLRAM-VEKDTIPSMLFYGPCGTGKTTLAGIIAKMSNSH 77

Query: 82  FRSTSGPVIAKAGDLAALLTN-------LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F + +    A  G+L  ++ +       L+ R +LF+DEIHR +   +++L P +ED  +
Sbjct: 78  FVNLNA-TNAGIGELRNIIEDARKRVRSLQQRTILFLDEIHRFNKSQQDVLLPCVEDGTI 136

Query: 135 DLMVGEGPSARSVKIN---LSRFTLI 157
            +++G        ++N   LSR  LI
Sbjct: 137 -ILIGATTENPFFEVNRPLLSRLRLI 161


>gi|258511998|ref|YP_003185432.1| AAA ATPase central domain-containing protein [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478724|gb|ACV59043.1| AAA ATPase central domain protein [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 447

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 73/146 (50%), Gaps = 15/146 (10%)

Query: 2   MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHV 57
           MD   L S + ++ +A ++  +RPR+L+E  G          L+  IE  +     L  +
Sbjct: 1   MDLFSLASEHEAEREAPLAYRMRPRSLDEMVGHENLVGRDGILRRMIERDR-----LMSI 55

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRD------VLFI 111
           +  GPPG GKTT+A+V+AR+    F   +      A    A+ T  E+RD      V+F+
Sbjct: 56  ILYGPPGTGKTTIAEVIARQTKARFIPLNAVTSGIADVRKAVETAREERDLYARRTVVFL 115

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLM 137
           DEIHR +   ++ L P +E   L L+
Sbjct: 116 DEIHRFNKSQQDALLPHVEAGLLSLV 141


>gi|307946316|ref|ZP_07661651.1| replication-associated recombination protein A [Roseibium sp.
           TrichSKD4]
 gi|307769980|gb|EFO29206.1| replication-associated recombination protein A [Roseibium sp.
           TrichSKD4]
          Length = 437

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 70/144 (48%), Gaps = 13/144 (9%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           L ++V++  AD   LRP+ L++  GQ              K R+  L  ++F GPPG GK
Sbjct: 10  LDKDVNRPLAD--RLRPQKLDDVVGQDHLLGPDGTLSRMLKTRS--LGSLIFWGPPGTGK 65

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIV 121
           TT+A+++A E  + F   S  + +   DL  +      R       +LF+DEIHR +   
Sbjct: 66  TTIARLLADETDLAFEQISA-IFSGVADLKKVFETARARRMGGRGTLLFVDEIHRFNRAQ 124

Query: 122 EEILYPAMEDFQLDLM--VGEGPS 143
           ++   P MED  + L+    E PS
Sbjct: 125 QDSFLPVMEDGTITLVGATTENPS 148


>gi|302517979|ref|ZP_07270321.1| recombination factor protein RarA [Streptomyces sp. SPB78]
 gi|302426874|gb|EFK98689.1| recombination factor protein RarA [Streptomyces sp. SPB78]
          Length = 451

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 63/127 (49%), Gaps = 11/127 (8%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL+E  GQ   + A S L+  +            V+  GPPG GKTTLA VV++  
Sbjct: 27  MRPRTLDEVVGQQHLLGAGSPLRRLVGEGDGGPAGASSVILWGPPGTGKTTLAYVVSKAT 86

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE------DRD-VLFIDEIHRLSIIVEEILYPAMED 131
              F   S  + A   ++  ++           +D VLF+DEIHR S   ++ L PA+E+
Sbjct: 87  NARFVELSA-ITAGVKEVRTVIDGARRASGGYGKDTVLFLDEIHRFSKAQQDSLLPAVEN 145

Query: 132 FQLDLMV 138
             + L+ 
Sbjct: 146 RWVTLIA 152


>gi|258593286|emb|CBE69625.1| putative polynucleotide enzyme with nucleotide triphosphate
           hydrolase domain [NC10 bacterium 'Dutch sediment']
          Length = 423

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 70/144 (48%), Gaps = 11/144 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRTL+EF GQ       K+   A +A    L  ++  GPPG GKTTLA ++A      
Sbjct: 1   MRPRTLQEFVGQEHLLGEGKLLRRAMEA--GELPSLILWGPPGSGKTTLAFLLAERCKAT 58

Query: 82  FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F+  S  V +   ++  ++   +       R +LFIDEIHR +   ++   P +E   + 
Sbjct: 59  FQPFSA-VTSGIKEIKEVIVRAQQERGYGRRTLLFIDEIHRFNKAQQDAFLPHVEGGTIV 117

Query: 136 LM--VGEGPSARSVKINLSRFTLI 157
           L+    E PS   +   LSR  ++
Sbjct: 118 LIGATTENPSFEVIAPLLSRAKVV 141


>gi|254719264|ref|ZP_05181075.1| recombination factor protein RarA [Brucella sp. 83/13]
 gi|265984263|ref|ZP_06096998.1| recombination factor protein RarA [Brucella sp. 83/13]
 gi|306838015|ref|ZP_07470873.1| recombination factor protein RarA [Brucella sp. NF 2653]
 gi|264662855|gb|EEZ33116.1| recombination factor protein RarA [Brucella sp. 83/13]
 gi|306406939|gb|EFM63160.1| recombination factor protein RarA [Brucella sp. NF 2653]
          Length = 437

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 95/209 (45%), Gaps = 30/209 (14%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E TGQ        V      +   +L  ++F GPPG GKTT+A+++A E  + 
Sbjct: 23  LRPKHLSEVTGQEHLTGPEGVLTRMIAS--GSLGSMIFWGPPGTGKTTVARLLAGETDLA 80

Query: 82  FRSTSGPVIAKAGDL-----AALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F   S  + +   DL     AA    +  R  +LF+DEIHR +   ++   P MED  + 
Sbjct: 81  FEQISA-IFSGVADLKRVFEAARARRMSGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTV- 138

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           +++G      S ++N       A  +R  +LT             + ++ E + T+++R 
Sbjct: 139 ILIGATTENPSFELN------AALLSRARVLT------------FHPHDSESIATLLKRA 180

Query: 196 AKL--TGLAVTDEAACEIAMRSRGTPRIA 222
            +    GL + DEA   +   + G  R A
Sbjct: 181 EEQEGQGLPLDDEARASLIRMADGDGRAA 209


>gi|28378253|ref|NP_785145.1| recombination factor protein RarA [Lactobacillus plantarum WCFS1]
 gi|28271088|emb|CAD63993.1| chromosome segregation helicase (putative) [Lactobacillus plantarum
           WCFS1]
          Length = 458

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 82/164 (50%), Gaps = 11/164 (6%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M +E L + + S        +RP TL +F GQ       K+  +      + L  ++F G
Sbjct: 1   MRQESLFNPDKSSSSPLAYRVRPVTLADFKGQEHLLGPGKLLRQLIAE--DQLPSLIFWG 58

Query: 62  PPGLGKTTLAQVVARELGVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHR 116
           PPG+GKTTLA+++A++   +F +    TSG   I +  D A    +  ++ ++FIDEIHR
Sbjct: 59  PPGVGKTTLAEIIAQQTQSHFITFSAVTSGIKEIRQIMDEAEANRDFGEKTIVFIDEIHR 118

Query: 117 LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN---LSRFTLI 157
            +   ++   P +E   + L +G      S +IN   LSR  ++
Sbjct: 119 FNKAQQDAFLPYVERGSITL-IGATTENPSFEINAALLSRCKVL 161


>gi|241763321|ref|ZP_04761377.1| AAA ATPase central domain protein [Acidovorax delafieldii 2AN]
 gi|241367473|gb|EER61772.1| AAA ATPase central domain protein [Acidovorax delafieldii 2AN]
          Length = 449

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 98/213 (46%), Gaps = 25/213 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPR+L+E  GQ   +   S L+  +EA +  +     ++  GPPG GKTTLA ++AR  
Sbjct: 26  MRPRSLDEMVGQRRLLAPRSALRRAVEAGRVHS-----MVLWGPPGCGKTTLALLLARYA 80

Query: 79  GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
              FRS S      P + +    AA       R VLF+DE+HR +   ++   P +E   
Sbjct: 81  DAEFRSVSAVLAGLPEVRQVLAEAAHRFAQGRRTVLFVDEVHRFNKGQQDAFLPHIERGS 140

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           + + VG      S ++N    + + +  RV ++     +     +RL   + E       
Sbjct: 141 I-VFVGATTENPSFELN----SALLSRCRVHVMEAVSVEDIVQALRLALDDPE------- 188

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
           RG    G+ V+ E+  EIA  + G  R A  LL
Sbjct: 189 RGLGNDGVQVSGESLREIARAADGDVRRALTLL 221


>gi|240948710|ref|ZP_04753082.1| recombination factor protein RarA [Actinobacillus minor NM305]
 gi|240296926|gb|EER47504.1| recombination factor protein RarA [Actinobacillus minor NM305]
          Length = 444

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 75/155 (48%), Gaps = 13/155 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR L E+ GQ       K    A +++      ++F GPPG GKTTLA+++A     +
Sbjct: 19  MRPRNLSEYIGQHHLIGEGKPLRRAIESKHP--HSMIFWGPPGTGKTTLAEIIAYHFDAD 76

Query: 82  FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
                  TSG   I +A + A L      R +LF+DE+HR +   ++   P +ED  + +
Sbjct: 77  VERLSAVTSGIKEIREAIERAKLNRQTGRRTLLFVDEVHRFNKSQQDAFLPYIEDGTI-I 135

Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
            +G      S ++N      + +  RV +L  PLQ
Sbjct: 136 FIGATTENPSFELN----NALLSRARVYIL-KPLQ 165


>gi|300767183|ref|ZP_07077095.1| replication-associated recombination protein A [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|308180402|ref|YP_003924530.1| replication-associated recombination protein A [Lactobacillus
           plantarum subsp. plantarum ST-III]
 gi|300495002|gb|EFK30158.1| replication-associated recombination protein A [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|308045893|gb|ADN98436.1| replication-associated recombination protein A [Lactobacillus
           plantarum subsp. plantarum ST-III]
          Length = 449

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 82/164 (50%), Gaps = 11/164 (6%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M +E L + + S        +RP TL +F GQ       K+  +      + L  ++F G
Sbjct: 1   MRQESLFNPDKSSSSPLAYRVRPVTLADFKGQEHLLGPGKLLRQLIAE--DQLPSLIFWG 58

Query: 62  PPGLGKTTLAQVVARELGVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHR 116
           PPG+GKTTLA+++A++   +F +    TSG   I +  D A    +  ++ ++FIDEIHR
Sbjct: 59  PPGVGKTTLAEIIAQQTQSHFITFSAVTSGIKEIRQIMDEAEANRDFGEKTIVFIDEIHR 118

Query: 117 LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN---LSRFTLI 157
            +   ++   P +E   + L +G      S +IN   LSR  ++
Sbjct: 119 FNKAQQDAFLPYVERGSITL-IGATTENPSFEINAALLSRCKVL 161


>gi|88812897|ref|ZP_01128141.1| ATPase, AAA family protein [Nitrococcus mobilis Nb-231]
 gi|88789819|gb|EAR20942.1| ATPase, AAA family protein [Nitrococcus mobilis Nb-231]
          Length = 435

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 64/119 (53%), Gaps = 15/119 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPR L EF GQ   ++A   L+  IEA +  +     ++F GPPG GKTTLA+++A   
Sbjct: 12  MRPRLLTEFVGQSHLLDAGKPLREVIEAGRPHS-----MVFWGPPGTGKTTLARLIAEAT 66

Query: 79  GVNFRSTSGPVIAKAGDL-AALLTNLEDR-----DVLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V+A   ++  A  T   +R      +LF+DE+HR +   ++   P +ED
Sbjct: 67  EAEFLALSA-VMAGVKEIRQASATGQANRARGRQTILFVDEVHRFNKAQQDAFLPFIED 124


>gi|154508869|ref|ZP_02044511.1| hypothetical protein ACTODO_01380 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798503|gb|EDN80923.1| hypothetical protein ACTODO_01380 [Actinomyces odontolyticus ATCC
           17982]
          Length = 447

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 63/133 (47%), Gaps = 11/133 (8%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP TL+E  GQ         L+  +    +   A+  V+  GPPG GKTTLA ++AR  
Sbjct: 27  MRPTTLDEVVGQSHLLGEGAPLRRLLSPGSSDGVAVSSVVLWGPPGTGKTTLAYLIARAS 86

Query: 79  GVNF------RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           G  F       S    V     D    L +  +  +LF+DE+HR S   ++ L PA+E+ 
Sbjct: 87  GRRFVELSAVSSGVSDVRRVVDDARRTLASGGEETILFVDEVHRFSKSQQDSLLPAVENR 146

Query: 133 QLDLMVG--EGPS 143
            + L+    E PS
Sbjct: 147 WVVLVAATTENPS 159


>gi|269798266|ref|YP_003312166.1| ATPase AAA [Veillonella parvula DSM 2008]
 gi|282850504|ref|ZP_06259883.1| recombination factor protein RarA [Veillonella parvula ATCC 17745]
 gi|269094895|gb|ACZ24886.1| AAA ATPase central domain protein [Veillonella parvula DSM 2008]
 gi|282579997|gb|EFB85401.1| recombination factor protein RarA [Veillonella parvula ATCC 17745]
          Length = 433

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 75/146 (51%), Gaps = 14/146 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  L+   GQ +A      F+ A     + +  +LF GP G GKTTLA ++A+    +
Sbjct: 20  MRPTKLDHLYGQEKAIGK-GTFLRAM-VEKDTIPSMLFYGPCGTGKTTLAGIIAKVSNSH 77

Query: 82  FRSTSGPVIAKAGDLAALLTN-------LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F + +    A  G+L  ++ +       L+ R +LF+DEIHR +   +++L P +ED  +
Sbjct: 78  FVNLNA-TNAGIGELRTIIEDARKRVRSLQQRTILFLDEIHRFNKSQQDVLLPCVEDGTI 136

Query: 135 DLMVGEGPSARSVKIN---LSRFTLI 157
            +++G        ++N   LSR  LI
Sbjct: 137 -ILIGATTENPFFEVNRPLLSRLRLI 161


>gi|162456465|ref|YP_001618832.1| recombination factor protein RarA [Sorangium cellulosum 'So ce 56']
 gi|161167047|emb|CAN98352.1| ATPase [Sorangium cellulosum 'So ce 56']
          Length = 460

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 64/134 (47%), Gaps = 18/134 (13%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV---LFVGPPGLGKTTLAQVVAREL 78
           +RPR+LE+  GQ       K+      ARA A D +   +  GPPG GKTTLA+VVA   
Sbjct: 42  MRPRSLEDMIGQGHLLGEGKLL-----ARAIAADRIPSMILWGPPGAGKTTLARVVAHTT 96

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAMED 131
              F   +  V+    +L  +L            R +LF+DEIHR +   ++   P +ED
Sbjct: 97  NARFVPFNA-VLGGVPELREILAQARAARSYEGKRTILFVDEIHRFNKAQQDAFLPHVED 155

Query: 132 FQLDLM--VGEGPS 143
             + L+    E PS
Sbjct: 156 GTITLIGATTENPS 169


>gi|74317514|ref|YP_315254.1| recombination factor protein RarA [Thiobacillus denitrificans ATCC
           25259]
 gi|74057009|gb|AAZ97449.1| putative helicase ATPase [Thiobacillus denitrificans ATCC 25259]
          Length = 442

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 70/142 (49%), Gaps = 15/142 (10%)

Query: 22  LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPRTL++  GQ         L++  ++ K     L  ++  GPPG+GKTTLA++ A+  
Sbjct: 27  LRPRTLDDVVGQSHLLGPGKPLRLAFDSGK-----LHSMILWGPPGVGKTTLARLTAQAF 81

Query: 79  GVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED-- 131
           G +F + S  +     I +A + A +   L    +LF+DE+HR +   ++   P +E   
Sbjct: 82  GADFIAISAVLSGVKDIREAVERARMNQKLGRATILFVDEVHRFNKSQQDAFLPHVESGL 141

Query: 132 FQLDLMVGEGPSARSVKINLSR 153
           F       E PS   V   LSR
Sbjct: 142 FTFIGATTENPSFEVVGALLSR 163


>gi|307545643|ref|YP_003898122.1| recombination factor protein RarA [Halomonas elongata DSM 2581]
 gi|307217667|emb|CBV42937.1| recombination factor protein RarA [Halomonas elongata DSM 2581]
          Length = 446

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 83/168 (49%), Gaps = 18/168 (10%)

Query: 7   LLSRNVSQEDADISL-LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGP 62
           L  +  S + A ++  +RPR L ++ GQ   V     ++  +E    R+     ++  GP
Sbjct: 3   LFQQATSDQHAPLAWRMRPRRLADYVGQQALVGPDKPVRRMVETGTVRS-----MILWGP 57

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           PG GKTTLA+++A E G +    S  +     I +A D A +    +   +LF+DEIHRL
Sbjct: 58  PGTGKTTLAEILAEESGAHLERLSAVMAGVKDIREAVDRARVAQGQDRGTLLFLDEIHRL 117

Query: 118 SIIVEEILYPAMEDFQLDLM--VGEGPS--ARSVKINLSRFTLIAATT 161
           +   ++ L P +E   L L+    E PS    S  ++ +R  ++ A T
Sbjct: 118 NKSQQDALLPHVESGLLTLIGATTENPSFEVNSALLSRARVHVLKALT 165


>gi|239832095|ref|ZP_04680424.1| recombination factor protein RarA [Ochrobactrum intermedium LMG
           3301]
 gi|239824362|gb|EEQ95930.1| recombination factor protein RarA [Ochrobactrum intermedium LMG
           3301]
          Length = 438

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 65/135 (48%), Gaps = 10/135 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPR L E TGQ        V      +   +L  ++F GPPG GKTT+A+++A E  + 
Sbjct: 23  LRPRHLSEVTGQEHLTGPEGVLTRMIAS--GSLGSMIFWGPPGTGKTTVARLLAGETDLA 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F   S  + +   DL  +      R       +LF+DEIHR +   ++   P MED  + 
Sbjct: 81  FEQISA-IFSGVADLKKVFEAARARRMSGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTV- 138

Query: 136 LMVGEGPSARSVKIN 150
           +++G      S ++N
Sbjct: 139 ILIGATTENPSFELN 153


>gi|295839928|ref|ZP_06826861.1| AAA family ATPase [Streptomyces sp. SPB74]
 gi|197696758|gb|EDY43691.1| AAA family ATPase [Streptomyces sp. SPB74]
          Length = 451

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 63/127 (49%), Gaps = 11/127 (8%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL+E  GQ   + A S L+  +            V+  GPPG GKTTLA VV++  
Sbjct: 27  MRPRTLDEVVGQQHLLGAGSPLRRLVGEGNGGPAGASSVILWGPPGTGKTTLAYVVSKAT 86

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE------DRD-VLFIDEIHRLSIIVEEILYPAMED 131
              F   S  + A   ++  ++           +D VLF+DEIHR S   ++ L PA+E+
Sbjct: 87  DARFVELSA-ITAGVKEVRTVIDGARRASGGYGKDTVLFLDEIHRFSKAQQDSLLPAVEN 145

Query: 132 FQLDLMV 138
             + L+ 
Sbjct: 146 RWVTLIA 152


>gi|121998175|ref|YP_001002962.1| recombination factor protein RarA [Halorhodospira halophila SL1]
 gi|121589580|gb|ABM62160.1| Recombination protein MgsA [Halorhodospira halophila SL1]
          Length = 427

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 69/142 (48%), Gaps = 15/142 (10%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEA-AKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           +RPR++EE  GQ       +   ++ A  R  ++   +  GPPG GKTTLA +VA     
Sbjct: 13  MRPRSIEEMAGQGHLLDTGRALAQSVAAGRPHSM---ILWGPPGSGKTTLAGLVAEHAEA 69

Query: 81  NFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
            F + S  V A   ++ A +    D      R VLF+DE+HR +   ++   P +ED  +
Sbjct: 70  RFLTLSA-VAAGVREIRAAMAEATDLWQAGRRTVLFVDEVHRFNKAQQDAFLPHVEDGTV 128

Query: 135 DLMVG---EGPSARSVKINLSR 153
            + VG   E PS    K  LSR
Sbjct: 129 -VFVGATTENPSFELNKALLSR 149


>gi|298207712|ref|YP_003715891.1| putative ATPase, AAA family protein [Croceibacter atlanticus
           HTCC2559]
 gi|83850349|gb|EAP88217.1| putative ATPase, AAA family protein [Croceibacter atlanticus
           HTCC2559]
          Length = 425

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 68/143 (47%), Gaps = 15/143 (10%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP++L+ +  Q            + + +A  L  ++F GPPG+GKTTLA ++A E    
Sbjct: 9   LRPKSLDSYISQKHLVGQDGSL--SKQIKAGVLPSLIFWGPPGVGKTTLANIIANESDRP 66

Query: 82  FRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           F S S           VI KA     L ++     +LFIDEIHR S   ++ L  A+E  
Sbjct: 67  FYSLSAINSGVKDVREVIEKAKKSDGLFSS--KNPLLFIDEIHRFSKSQQDSLLGAVEKG 124

Query: 133 QLDLM--VGEGPSARSVKINLSR 153
            + L+    E PS   +   LSR
Sbjct: 125 WVTLIGATTENPSFEVIPALLSR 147


>gi|300703422|ref|YP_003745024.1| replicatioN-associated recombination protein a [Ralstonia
           solanacearum CFBP2957]
 gi|299071085|emb|CBJ42394.1| Replication-associated recombination protein A [Ralstonia
           solanacearum CFBP2957]
          Length = 434

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 73/263 (27%), Positives = 109/263 (41%), Gaps = 51/263 (19%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL+E  GQ         L++  ++ K  +     ++F GPPG+GKTTLA++ A   
Sbjct: 17  LRPKTLDEVIGQSHLLGEGKPLRLAFQSGKPHS-----MIFWGPPGVGKTTLARLTASAF 71

Query: 79  GVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
              F + S  +     I +A + A          +LF+DEIHR +   ++ L P +E   
Sbjct: 72  KCEFIALSAVLSGVKDIREAMEQARQFLAQGKSTILFVDEIHRFNKSQQDALLPHVES-- 129

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP-LQDRFGIPIRLNFYEI-----ED 187
                               FT I ATT      NP  +    +  R   Y +     E+
Sbjct: 130 ------------------GLFTFIGATTE-----NPSFEVNSALLSRAQVYVLKSLTDEE 166

Query: 188 LKTIVQRGAK--LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           LK ++QR  +  L  L   D+A   I   + G  R    LL + +  A  A  + I  E 
Sbjct: 167 LKLLLQRAQEKALGDLEFEDKAVDTIVGYADGDARRFLNLLEQCKTAAGAAGVQKIDAEF 226

Query: 246 ADAALLRLA--IDKMG---FDQL 263
              AL   A   DK G   +DQ+
Sbjct: 227 IQNALSLNARRFDKGGDNFYDQI 249


>gi|251789956|ref|YP_003004677.1| recombination factor protein RarA [Dickeya zeae Ech1591]
 gi|247538577|gb|ACT07198.1| AAA ATPase central domain protein [Dickeya zeae Ech1591]
          Length = 434

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 62/118 (52%), Gaps = 15/118 (12%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPRTL+E  GQ         L++  ++ K  +     ++F GPPG+GKTTLA++ A   
Sbjct: 17  LRPRTLDEVIGQSHLLGEGKPLRLAFQSGKPHS-----MIFWGPPGVGKTTLARLTANYF 71

Query: 79  GVNFRSTSGPVIAKAGDLAALL----TNLE--DRDVLFIDEIHRLSIIVEEILYPAME 130
              F + S  V +   D+ A +     NL+   + +LF+DEIHR +   ++ L P  E
Sbjct: 72  DCEFIALSA-VFSGVKDIRAAMEQAQQNLDRGKKTILFVDEIHRFNKSQQDALLPYAE 128


>gi|124266314|ref|YP_001020318.1| recombination factor protein RarA [Methylibium petroleiphilum PM1]
 gi|124259089|gb|ABM94083.1| Recombination protein MgsA [Methylibium petroleiphilum PM1]
          Length = 443

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 105/236 (44%), Gaps = 35/236 (14%)

Query: 12  VSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           V+ +DA ++  LRP TL+E  GQ +     K  ++AA A       +L+ GPPG GKTTL
Sbjct: 14  VASDDAPLAERLRPATLDEVIGQRQLLGEGKP-LQAAFASGRPHSMILW-GPPGTGKTTL 71

Query: 71  AQVVARELGVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           A+++A      F + S  +     I  A + A +   +  R ++F+DE+HR +   ++  
Sbjct: 72  ARLMAHAFDAQFIAISAVLGGVKDIRDAVEQAQVAQGMGRRTIVFVDEVHRFNKAQQDAF 131

Query: 126 YPAMED--FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
            P +E   F       E PS       LSR T+         +  PL D           
Sbjct: 132 LPHVESGLFTFIGATTENPSFEVNSALLSRATV--------HVLRPLDD----------- 172

Query: 184 EIEDLKTIVQRG-AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
              +L  +++RG A L G  ++D A   +   + G  R   RLL    + A +A A
Sbjct: 173 --SELAELLERGRALLNGSPLSDAARTRLIAYADGDAR---RLLNTYENIARMAGA 223


>gi|306840328|ref|ZP_07473100.1| recombination factor protein RarA [Brucella sp. BO2]
 gi|306289727|gb|EFM60916.1| recombination factor protein RarA [Brucella sp. BO2]
          Length = 437

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 95/209 (45%), Gaps = 30/209 (14%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E TGQ        V      +   +L  ++F GPPG GKTT+A+++A E  + 
Sbjct: 23  LRPKHLSEVTGQEHLTGPEGVLTRMIAS--GSLGSMIFWGPPGTGKTTVARLLAGETDLA 80

Query: 82  FRSTSGPVIAKAGDL-----AALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F   S  + +   DL     AA    +  R  +LF+DEIHR +   ++   P MED  + 
Sbjct: 81  FEQISA-IFSGVADLKRVFEAARARRMSGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTV- 138

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           +++G      S ++N       A  +R  +LT             + ++ E + T+++R 
Sbjct: 139 ILIGATTENPSFELN------AALLSRARVLT------------FHPHDSESIATLLKRA 180

Query: 196 AKLTG--LAVTDEAACEIAMRSRGTPRIA 222
            +  G  L + DEA   +   + G  R A
Sbjct: 181 EEQEGQALPLDDEARASLIRMADGDGRAA 209


>gi|254361649|ref|ZP_04977787.1| possible recombination ATPase [Mannheimia haemolytica PHL213]
 gi|261496364|ref|ZP_05992758.1| putative recombination ATPase [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|153093167|gb|EDN74183.1| possible recombination ATPase [Mannheimia haemolytica PHL213]
 gi|261307949|gb|EEY09258.1| putative recombination ATPase [Mannheimia haemolytica serotype A2
           str. OVINE]
          Length = 445

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 59/118 (50%), Gaps = 13/118 (11%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPR L E+ GQ         L+  IEA  + +     ++F GPPG GKTTLA+++A  L
Sbjct: 19  MRPRNLAEYVGQSHLIGEGKPLRRAIEAGHSHS-----MIFWGPPGTGKTTLAEIIAHHL 73

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
                     TSG   I +  + A L      R +LF+DE+HR +   ++   P +ED
Sbjct: 74  DAEVERISAVTSGVKEIREVIEQAKLNRQAGRRTLLFVDEVHRFNKSQQDAFLPHIED 131


>gi|118594713|ref|ZP_01552060.1| recombination protein [Methylophilales bacterium HTCC2181]
 gi|118440491|gb|EAV47118.1| recombination protein [Methylophilales bacterium HTCC2181]
          Length = 433

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 65/119 (54%), Gaps = 14/119 (11%)

Query: 21  LLRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +LRP+ + +  GQ+E      +LKV IE      ++L  ++  GPPG+GKT++A V++  
Sbjct: 12  ILRPKNVHDIVGQIELLGEGQSLKVAIEG-----KSLPSMILWGPPGVGKTSIAHVISNC 66

Query: 78  LGVNFRSTSGPV-----IAKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAME 130
           +   F S S  +     I +A + A  +   + R+ +LF+DE+HR +   ++   P +E
Sbjct: 67  IDAEFLSISAVLSGVKEIREAIEKAQFMKEHQQRNTILFVDEVHRFNKSQQDAFLPHIE 125


>gi|86143957|ref|ZP_01062325.1| putative ATPase, AAA family protein [Leeuwenhoekiella blandensis
           MED217]
 gi|85829664|gb|EAQ48127.1| putative ATPase, AAA family protein [Leeuwenhoekiella blandensis
           MED217]
          Length = 425

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 68/143 (47%), Gaps = 15/143 (10%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+TL+++  Q     +      + K+    +  ++  GPPG+GKTTLA ++A E    
Sbjct: 9   LRPKTLDDYLSQEHLVGDKGSLTSSIKSGV--IPSLILWGPPGVGKTTLASIIAEESKRP 66

Query: 82  FRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           F   S           VI KA +   L T  +   +LFIDEIHR S   ++ L  A+E  
Sbjct: 67  FYVLSAINSGVKDVREVIDKAKNAGGLFT--QKNPLLFIDEIHRFSKSQQDSLLAAVEKG 124

Query: 133 QLDLM--VGEGPSARSVKINLSR 153
            + L+    E PS   +   LSR
Sbjct: 125 WVTLIGATTENPSFEVIPALLSR 147


>gi|311739533|ref|ZP_07713368.1| replication-associated recombination protein A [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311305349|gb|EFQ81417.1| replication-associated recombination protein A [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 463

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 66/130 (50%), Gaps = 11/130 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L+E  GQ    +  K      +   EA   V+  GPPG GKTT+A ++A ++G N
Sbjct: 37  MRPQNLDEVVGQDHLLAPGKPLRRLVEGSGEA--SVILYGPPGTGKTTIASLIASQMGQN 94

Query: 82  FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F   S  + +    +  ++T+         R VLFIDE+HR S   ++ L  A+E+  + 
Sbjct: 95  FVGLSA-LDSGVKQVREVITHARQELIHGRRTVLFIDEVHRFSKTQQDALLAAVENRTVL 153

Query: 136 LMVG--EGPS 143
           L+    E PS
Sbjct: 154 LVAATTENPS 163


>gi|302533391|ref|ZP_07285733.1| LOW QUALITY PROTEIN: recombination factor protein RarA
           [Streptomyces sp. C]
 gi|302442286|gb|EFL14102.1| LOW QUALITY PROTEIN: recombination factor protein RarA
           [Streptomyces sp. C]
          Length = 340

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 63/127 (49%), Gaps = 11/127 (8%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPR L+E  GQ   ++  S L+  +            V+  GPPG+GKTTLA VV++  
Sbjct: 27  MRPRNLDEVVGQQHLLKPGSPLRRLVGEGAGGPAGASSVILWGPPGIGKTTLAYVVSQAT 86

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAMED 131
              F   S  + A   ++ A++   +          VLF+DEIHR S   ++ L PA+E+
Sbjct: 87  RKRFVELSA-ITAGVKEVRAVIEGAKRAAGGYGKETVLFLDEIHRFSKAQQDSLLPAVEN 145

Query: 132 FQLDLMV 138
             + L+ 
Sbjct: 146 RWVTLIA 152


>gi|189460834|ref|ZP_03009619.1| hypothetical protein BACCOP_01481 [Bacteroides coprocola DSM 17136]
 gi|189432408|gb|EDV01393.1| hypothetical protein BACCOP_01481 [Bacteroides coprocola DSM 17136]
          Length = 424

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 75/147 (51%), Gaps = 18/147 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP+TL+++ GQ   V   + L+  I++ +     +   +  GPPG+GKTTLAQ++A  L
Sbjct: 9   MRPKTLDDYIGQKHLVGEGAVLRRMIDSGR-----ISSFILWGPPGVGKTTLAQIIANRL 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V +   D+  ++          +   +LFIDEIHR S   ++ L  A+E 
Sbjct: 64  ETPFYTLSA-VTSGVKDVRDVIDKARSNRFFSQQSPILFIDEIHRFSKSQQDSLLGAVET 122

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTL 156
             + L+    E PS   ++  LSR  L
Sbjct: 123 GVVTLIGATTENPSFEVIRPLLSRCQL 149


>gi|167580959|ref|ZP_02373833.1| recombination factor protein RarA [Burkholderia thailandensis
           TXDOH]
          Length = 436

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 82/326 (25%), Positives = 136/326 (41%), Gaps = 58/326 (17%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL +  GQ         LK+  E+ K  +     ++  GPPG+GKTTLA++ A   
Sbjct: 17  LRPKTLADVIGQTHLLGEGKPLKLAFESGKPHS-----MILWGPPGVGKTTLARLTALAF 71

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V+    D+   +    D         +LF+DEIHR +   ++ L P +E 
Sbjct: 72  DCEFIALSA-VLGGVKDIREAMEQARDTLNRTGRHTILFVDEIHRFNKAQQDALLPFVES 130

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
             L   +G      S ++N    + + +  +V +L +  +D              +L+ +
Sbjct: 131 -GLVTFIGATTENPSFEVN----SALLSRAQVYVLKSLTED--------------ELRQL 171

Query: 192 VQRG--AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
           ++R     L GLA  D+A   +   + G  R    LL + +  A  A   TI     DAA
Sbjct: 172 LKRAQDTALDGLAFDDKAVDTLVGYADGDARRFLNLLEQAQTAASSAGVTTI-----DAA 226

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNF-GGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            +  A             +TM AR F  GG    + ISA     R +  D    ++ +  
Sbjct: 227 FVESA-------------MTMNARRFDKGGDNFYDQISALHKSVRGSSPDGALYWLCRML 273

Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIP 332
                P+   R ++ +AW+ +G+  P
Sbjct: 274 DGGADPKYLARRVVRMAWEDIGLADP 299


>gi|257464779|ref|ZP_05629150.1| recombination factor protein RarA [Actinobacillus minor 202]
 gi|257450439|gb|EEV24482.1| recombination factor protein RarA [Actinobacillus minor 202]
          Length = 426

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 75/155 (48%), Gaps = 13/155 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR L E+ GQ       K    A +++      ++F GPPG GKTTLA+++A     +
Sbjct: 1   MRPRNLSEYIGQHHLIGEGKPLRRAIESKHP--HSMIFWGPPGTGKTTLAEIIAYHFDAD 58

Query: 82  FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
                  TSG   I +A + A L      R +LF+DE+HR +   ++   P +ED  + +
Sbjct: 59  VERLSAVTSGIKEIREAIERAKLNRQTGRRTLLFVDEVHRFNKSQQDAFLPYIEDGTI-I 117

Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
            +G      S ++N      + +  RV +L  PLQ
Sbjct: 118 FIGATTENPSFELN----NALLSRARVYIL-KPLQ 147


>gi|241763747|ref|ZP_04761795.1| AAA ATPase central domain protein [Acidovorax delafieldii 2AN]
 gi|241367052|gb|EER61437.1| AAA ATPase central domain protein [Acidovorax delafieldii 2AN]
          Length = 437

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 135/327 (41%), Gaps = 60/327 (18%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPR L E  GQ         L++  E+ +  +      +  GPPG+GKTT+A+++A   
Sbjct: 15  LRPRQLSEVIGQQHVLGPGMPLRLAFESGRPHS-----CILWGPPGVGKTTIARLMADAF 69

Query: 79  GVNFRSTSGPVIAKAGDL--AALLTN------LEDRDVLFIDEIHRLSIIVEEILYPAME 130
              F S S  V+    D+  A  L        ++ R ++F+DE+HR +   ++   P +E
Sbjct: 70  DAQFISISA-VLGGVKDIRDAVQLAESARDGLMQQRTIVFVDEVHRFNKSQQDAFLPHVE 128

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL--LTNPLQDRFGIPIRLNFYEIEDL 188
                                  FT I ATT      + + L  R  + + L     +DL
Sbjct: 129 S--------------------GLFTFIGATTENPSFEVNSALLSRAAVYV-LQPLSTDDL 167

Query: 189 KTIVQRGAKLTGL-AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           K IV        L A+ +EA   +   + G  R   RLL  +    E+A A+    EI D
Sbjct: 168 KQIVALAQSQQALPAIENEAIERLVAYADGDAR---RLLNTLETL-EMAAAQEQLAEITD 223

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           A LL++  ++M              R   GG    +TISA     R +  D    ++++ 
Sbjct: 224 AWLLKVLGERM-------------RRYDKGGEQFYDTISALHKSVRGSDPDAALYWLVRM 270

Query: 308 GFIQRTPR--GRLLMPIAWQHLGIDIP 332
                 PR   R ++ +AW+ +G+  P
Sbjct: 271 LDGGADPRYMARRIVRMAWEDIGLADP 297


>gi|227529658|ref|ZP_03959707.1| crossover junction endodeoxyribonuclease [Lactobacillus vaginalis
           ATCC 49540]
 gi|227350448|gb|EEJ40739.1| crossover junction endodeoxyribonuclease [Lactobacillus vaginalis
           ATCC 49540]
          Length = 432

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 74/177 (41%), Gaps = 26/177 (14%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR L E  GQ       K+     KAR   L  ++  GPPG GKT++A  +A      
Sbjct: 8   MRPRNLSEVVGQQHLVGPNKIISRMVKARM--LSSLILYGPPGTGKTSIASAIAGSTKYA 65

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR  +     K    + A    +    +L +DEIHRL    ++ L P +E+         
Sbjct: 66  FRKLNAATDTKKDLQVVAEEAKMSGTVILLLDEIHRLDKSKQDFLLPHLEN--------- 116

Query: 141 GPSARSVKINLSRFTLIAATTRVGLLT-NP-LQDRFGIPIRLNFYEIEDLKTIVQRG 195
                       R  LI ATT    ++ NP ++ R  I   ++   IED+K  V R 
Sbjct: 117 -----------GRIILIGATTENPYISINPAIRSRTQI-FPVHPLSIEDMKVAVNRA 161


>gi|294675887|ref|YP_003576502.1| ATPase AAA [Rhodobacter capsulatus SB 1003]
 gi|294474707|gb|ADE84095.1| ATPase, AAA family [Rhodobacter capsulatus SB 1003]
          Length = 435

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/144 (33%), Positives = 68/144 (47%), Gaps = 11/144 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L E  GQ             A   A +L  V+  GPPG+GKTT+A+++A E    
Sbjct: 23  IRPQHLSEVIGQTHVLGPEGPL--GAMLAAGSLGSVILWGPPGVGKTTIARLLAHESDRA 80

Query: 82  FRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           F   S      P + K  D A L        +LF+DEIHR +   ++   P MED  + L
Sbjct: 81  FVQISAIFSGVPELRKVFDAAKLRMGQGRGTLLFVDEIHRFNKAQQDSFLPHMEDGTI-L 139

Query: 137 MVGEGPSARSVKIN---LSRFTLI 157
           +VG      S ++N   LSR  +I
Sbjct: 140 LVGATTENPSFELNAALLSRAQVI 163


>gi|161485694|ref|NP_637341.2| recombination factor protein RarA [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|162017102|ref|YP_243284.2| recombination factor protein RarA [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188991669|ref|YP_001903679.1| recombination factor protein RarA [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167733429|emb|CAP51630.1| ATPase [Xanthomonas campestris pv. campestris]
          Length = 456

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 70/138 (50%), Gaps = 16/138 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL+E  GQ   + A S L+  +E+ +  +     ++  GPPG GKTTLA ++A   
Sbjct: 29  MRPRTLDEMVGQKRLLAADSALRRAVESGRVHS-----MILWGPPGCGKTTLALLLAHYA 83

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDF 132
              F++ S  V++   D+  +L           R VLF+DE+HR +   ++   P +E  
Sbjct: 84  DAEFKAISA-VLSGLPDVRQVLAEAAQRFASGRRTVLFVDEVHRFNKAQQDAFLPHIERG 142

Query: 133 QLDLMVGEGPSARSVKIN 150
            + L VG      S ++N
Sbjct: 143 TI-LFVGATTENPSFELN 159


>gi|222111884|ref|YP_002554148.1| recombination factor protein rara [Acidovorax ebreus TPSY]
 gi|221731328|gb|ACM34148.1| AAA ATPase central domain protein [Acidovorax ebreus TPSY]
          Length = 442

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 81/325 (24%), Positives = 133/325 (40%), Gaps = 56/325 (17%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPR+L E  GQ         L++  E+ +  +      +  GPPG+GKTT+A+++A   
Sbjct: 16  LRPRSLAEVIGQQHVLGPGMPLRLAFESGRPHS-----CILWGPPGVGKTTIARLMAEAF 70

Query: 79  GVNFRSTSGPVIAKAGDLAALLTN--------LEDRDVLFIDEIHRLSIIVEEILYPAME 130
              F S S  V+    D+   +          ++ R ++F+DE+HR +   ++   P +E
Sbjct: 71  DAQFISISA-VLGGVKDIRDAVQQAESARDGLMQQRTIVFVDEVHRFNKSQQDAFLPHVE 129

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
              L   VG      S ++N +  +  A       +  PL               +DLK 
Sbjct: 130 S-GLFTFVGATTENPSFEVNSALLSRAAV-----YVLQPLGS-------------DDLKQ 170

Query: 191 IVQRGAKLTGLAVTDEAACE-IAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
           IV +   L  L   + AA E +   + G  R   RLL  +      A    I R I DA 
Sbjct: 171 IVAKAQALQALPAIENAALERLIAYADGDAR---RLLNTLETLEVTASQAGIER-IEDAW 226

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           LL++  ++M              R   GG    +TISA     R +  D    ++++   
Sbjct: 227 LLQVLGERM-------------RRYDKGGEQFYDTISALHKSVRGSDPDAALYWLVRMLD 273

Query: 310 IQRTPR--GRLLMPIAWQHLGIDIP 332
               PR   R ++ +AW+ +G+  P
Sbjct: 274 GGADPRYMARRIVRMAWEDIGLADP 298


>gi|163752528|ref|ZP_02159714.1| ATPase, AAA family protein [Shewanella benthica KT99]
 gi|161327583|gb|EDP98781.1| ATPase, AAA family protein [Shewanella benthica KT99]
          Length = 443

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 117/262 (44%), Gaps = 35/262 (13%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP  LE+F GQ         L+  +EA +A +     +LF GPPG GKTTLA++VA   
Sbjct: 19  MRPEVLEQFIGQSHLLGEGKPLRKALEAGRAHS-----MLFWGPPGTGKTTLAELVAHYA 73

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131
             +    S  V +   ++   + + ++       R +LF+DE+HR +   ++   P +ED
Sbjct: 74  NAHVERISA-VTSGVKEIRTAIEHAKNVAESRGQRTLLFVDEVHRFNKSQQDAFLPFIED 132

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
             + + VG      S +IN      + +  RV L+     D     +R    + +     
Sbjct: 133 GTV-IFVGATTENPSFEIN----NALLSRARVYLIKRLTNDEIIQIVRQALIDND----- 182

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE-IADAAL 250
             RG     L + D  A ++A    G  R A  L+  + D   +A  ++ T + I + A 
Sbjct: 183 --RGLGKRQLKIPDAVAEKLANVCDGDARKALNLIELMSDM--IADGESFTEQMIIEVAG 238

Query: 251 LRLAIDKMGFDQLDLRYLTMIA 272
            +LA    GFD+   ++  +I+
Sbjct: 239 QQLA----GFDKNGDQFYDLIS 256


>gi|269216870|ref|ZP_06160724.1| replication-associated recombination protein A [Slackia exigua ATCC
           700122]
 gi|269129677|gb|EEZ60761.1| replication-associated recombination protein A [Slackia exigua ATCC
           700122]
          Length = 448

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 79/167 (47%), Gaps = 14/167 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG-- 79
           LRPR+L+E  GQ       KV     ++  + +  ++F GPPG+GKTTLA+V+A +    
Sbjct: 26  LRPRSLDEVVGQQHLIGPGKVLRRIIES--DQVSSMIFWGPPGVGKTTLARVIADQTEAR 83

Query: 80  -VNFRSTSGPV--IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
            +NF + +  +  I      A     L  R ++F+DEIHR +   ++   P +E   + L
Sbjct: 84  FINFSAVTSGIKEIRTIMQEADAQRGLGRRTIVFVDEIHRFNKAQQDAFLPFVEKGAITL 143

Query: 137 M--VGEGPSARSVKINLSR---FTLIAATTR--VGLLTNPLQDRFGI 176
           +    E PS       LSR   F L A T    V LL   L D  G 
Sbjct: 144 IGATTENPSFEVNGALLSRCKVFVLKALTENDVVELLKRALSDERGF 190


>gi|239939946|ref|ZP_04691883.1| recombination factor protein RarA [Streptomyces roseosporus NRRL
           15998]
 gi|239986430|ref|ZP_04707094.1| recombination factor protein RarA [Streptomyces roseosporus NRRL
           11379]
 gi|291443377|ref|ZP_06582767.1| recombination factor protein RarA [Streptomyces roseosporus NRRL
           15998]
 gi|291346324|gb|EFE73228.1| recombination factor protein RarA [Streptomyces roseosporus NRRL
           15998]
          Length = 455

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 65/127 (51%), Gaps = 12/127 (9%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL+E  GQ   ++  S L+  +      A A   V+  GPPG GKTTLA VV++  
Sbjct: 27  MRPRTLDEVVGQQHLLKPGSPLRRLVGDGGGPAGA-SSVILWGPPGTGKTTLAYVVSKAT 85

Query: 79  GVNFRSTSGPVIAKAGDLAALLTN-------LEDRDVLFIDEIHRLSIIVEEILYPAMED 131
              F   S  + A   ++ A++ +            VLF+DEIHR S   ++ L PA+E+
Sbjct: 86  NKRFVELSA-ITAGVKEVRAVIESARRATGGFGKETVLFLDEIHRFSKAQQDSLLPAVEN 144

Query: 132 FQLDLMV 138
             + L+ 
Sbjct: 145 RWVTLIA 151


>gi|228960671|ref|ZP_04122316.1| hypothetical protein bthur0005_41330 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228799035|gb|EEM46007.1| hypothetical protein bthur0005_41330 [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 476

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 87/350 (24%), Positives = 137/350 (39%), Gaps = 65/350 (18%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           ++R+ +L   V  +      +RP  ++E  GQ       K+     +A       ++  G
Sbjct: 37  IERDYILRETVQMKQPLAHRMRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYG 94

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSI 119
           PPG GKT++A  +A   G  FR  +  V     D+  ++    +    VL +DE+HRL  
Sbjct: 95  PPGTGKTSIASAIAGSTGTPFRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDK 153

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPI 178
             ++ L P +E   L                    TLI ATT     +NP       I  
Sbjct: 154 AKQDFLLPHLESGLL--------------------TLIGATT-----SNPFHAINSAIRS 188

Query: 179 RLNFYEI-----EDLKTIVQR-------GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
           R   +E+     ED+   ++R       G     + VTDEA    A  S G  R A   L
Sbjct: 189 RCQIFELHALTEEDILIGLKRALEDKEKGLGEYAVTVTDEALHHFANASGGDMRSAYNAL 248

Query: 227 RR--VRDFAEVAHAKTITREIADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGI 282
               +  F     A  IT EIA+  L + +   DK G    D+  L+   ++  G  V  
Sbjct: 249 ELAVLSSFTTDDQAAEITLEIAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDVNA 306

Query: 283 ETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
                       A+  L    +I+ G +Q    GR L+ +A++ +G+  P
Sbjct: 307 ------------ALHYLAR--LIEAGDLQSI--GRRLLIMAYEDIGLASP 340


>gi|229152603|ref|ZP_04280792.1| hypothetical protein bcere0011_41380 [Bacillus cereus m1550]
 gi|228630864|gb|EEK87504.1| hypothetical protein bcere0011_41380 [Bacillus cereus m1550]
          Length = 476

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 87/350 (24%), Positives = 137/350 (39%), Gaps = 65/350 (18%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           ++R+ +L   V  +      +RP  ++E  GQ       K+     +A       ++  G
Sbjct: 37  IERDYILRETVQMKQPLAHRMRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYG 94

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSI 119
           PPG GKT++A  +A   G  FR  +  V     D+  ++    +    VL +DE+HRL  
Sbjct: 95  PPGTGKTSIASAIAGSTGTPFRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDK 153

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPI 178
             ++ L P +E   L                    TLI ATT     +NP       I  
Sbjct: 154 AKQDFLLPHLESGLL--------------------TLIGATT-----SNPFHAINSAIRS 188

Query: 179 RLNFYEI-----EDLKTIVQR-------GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
           R   +E+     ED+   ++R       G     + VTDEA    A  S G  R A   L
Sbjct: 189 RCQIFELHALTEEDILIGLKRALEDKEKGLGEYAVTVTDEALHHFANASGGDMRSAYNAL 248

Query: 227 RR--VRDFAEVAHAKTITREIADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGI 282
               +  F     A  IT EIA+  L + +   DK G    D+  L+   ++  G  V  
Sbjct: 249 ELAVLSSFTTDDQAAEITLEIAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDVNA 306

Query: 283 ETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
                       A+  L    +I+ G +Q    GR L+ +A++ +G+  P
Sbjct: 307 ------------ALHYLAR--LIEAGDLQSI--GRRLLIMAYEDIGLASP 340


>gi|254168320|ref|ZP_04875166.1| Replication factor C family [Aciduliprofundum boonei T469]
 gi|254169364|ref|ZP_04876193.1| Replication factor C family [Aciduliprofundum boonei T469]
 gi|289595866|ref|YP_003482562.1| Replication factor C [Aciduliprofundum boonei T469]
 gi|197621683|gb|EDY34269.1| Replication factor C family [Aciduliprofundum boonei T469]
 gi|197622829|gb|EDY35398.1| Replication factor C family [Aciduliprofundum boonei T469]
 gi|289533653|gb|ADD08000.1| Replication factor C [Aciduliprofundum boonei T469]
          Length = 317

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 96/226 (42%), Gaps = 37/226 (16%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           ED  +   RP++L+E  GQ E    LK ++     +A+ + H+LF GP G GKTT A  +
Sbjct: 2   EDVWVEKYRPKSLDEVVGQDEIVDRLKSYV-----KAKTMPHLLFAGPAGTGKTTCAIAL 56

Query: 75  AREL-GVNFRSTS-----------GPVIAKAGDLAALLT-NLEDRDVLFIDEIHRLSIIV 121
           AREL G N+R++            G V  K  + A     N     ++F+DE   L+   
Sbjct: 57  ARELFGENWRASFHELNASDERGIGIVRTKIKEYARTAAPNDVGFKIIFLDEADALTPDA 116

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           +  L   ME +                    RF L  +      +  P+Q R  +  R  
Sbjct: 117 QAALRRTMEMYS----------------RTCRFIL--SCNYSSKIIEPIQSRCAV-FRFT 157

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             + ED+K  ++  A   G  +T++A   I   S G  R A  +L+
Sbjct: 158 PLKSEDIKKRLKYIADSEGKKITEDALNAIVYISGGDMRKAINILQ 203


>gi|148828420|ref|YP_001293173.1| recombination factor protein RarA [Haemophilus influenzae PittGG]
 gi|148719662|gb|ABR00790.1| outer-membrane lipoprotein carrier protein precursor [Haemophilus
           influenzae PittGG]
          Length = 446

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 62/115 (53%), Gaps = 7/115 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP +LE++ GQ       K   +A +A    +  ++F GPPG GKTTLA+++A+ +   
Sbjct: 20  MRPTSLEQYFGQSHLIGEGKPLRKAIQAGH--IHSMIFWGPPGTGKTTLAEIIAQCINAE 77

Query: 82  ----FRSTSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
               F  TSG   I +A D A      + + +LF+DE+HR +   ++   P +ED
Sbjct: 78  VERIFAVTSGIKEIREAIDRAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIED 132


>gi|256044856|ref|ZP_05447760.1| recombination factor protein RarA [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|260565542|ref|ZP_05836026.1| ATPase [Brucella melitensis bv. 1 str. 16M]
 gi|265991283|ref|ZP_06103840.1| recombination factor protein RarA [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|260151610|gb|EEW86704.1| ATPase [Brucella melitensis bv. 1 str. 16M]
 gi|263002067|gb|EEZ14642.1| recombination factor protein RarA [Brucella melitensis bv. 1 str.
           Rev.1]
          Length = 437

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 95/209 (45%), Gaps = 30/209 (14%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E TGQ        V      +   +L  ++F GPPG GKTT+A+++A E  + 
Sbjct: 23  LRPKHLSEVTGQEHLTGPEGVLTRMIAS--GSLGSMVFWGPPGTGKTTVARLLAGETDLA 80

Query: 82  FRSTSGPVIAKAGDL-----AALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F   S  + +   DL     AA    +  R  +LF+DEIHR +   ++   P MED  + 
Sbjct: 81  FEQISA-IFSGVADLKRVFEAARARRMSGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTV- 138

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           +++G      S ++N       A  +R  +LT             + ++ E + T+++R 
Sbjct: 139 ILIGATTENPSFELN------AALLSRARVLT------------FHPHDSESIATLLKRA 180

Query: 196 AKLTG--LAVTDEAACEIAMRSRGTPRIA 222
            +  G  L + DEA   +   + G  R A
Sbjct: 181 EEQEGQALPLDDEARASLIRMADGDGRAA 209


>gi|221195770|ref|ZP_03568823.1| recombination factor protein RarA [Atopobium rimae ATCC 49626]
 gi|221184244|gb|EEE16638.1| recombination factor protein RarA [Atopobium rimae ATCC 49626]
          Length = 465

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/120 (35%), Positives = 58/120 (48%), Gaps = 16/120 (13%)

Query: 22  LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP+TLE + GQ +A    S L+  IE      + L  VL  GP G GKTTLA ++A   
Sbjct: 23  MRPQTLEGYVGQTQAVGEGSWLRRAIEH-----DTLSSVLLYGPAGTGKTTLAHIIANST 77

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131
              F   S  +     DL   +   E        R +LFIDEIHR +   ++ L  A+ED
Sbjct: 78  HAAFVEVSA-ITGTVKDLRREIEAAESRLLTAGTRTILFIDEIHRFNRSQQDALLHAVED 136


>gi|110634002|ref|YP_674210.1| recombination factor protein RarA [Mesorhizobium sp. BNC1]
 gi|110284986|gb|ABG63045.1| Recombination protein MgsA [Chelativorans sp. BNC1]
          Length = 440

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 78/160 (48%), Gaps = 14/160 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L+E  GQ                R+ +L  ++F GPPG GKTT+A+++A E  + 
Sbjct: 24  LRPKRLDEVVGQEHLTGPEGALTRMI--RSGSLGSLVFWGPPGTGKTTVARLLAGETSMA 81

Query: 82  FRSTSGPVIAKAGDL-----AALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F   S  + +   DL     AA L   + R  +LF+DEIHR +   ++   P MED  + 
Sbjct: 82  FEQISA-IFSGVADLKKVFEAARLRRSQGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTV- 139

Query: 136 LMVGEGPSARSVKIN---LSRF-TLIAATTRVGLLTNPLQ 171
           ++VG      S ++N   LSR   L+  +     L N LQ
Sbjct: 140 VLVGATTENPSFELNAALLSRARVLVFHSLEANSLENLLQ 179


>gi|307565626|ref|ZP_07628104.1| recombination factor protein RarA [Prevotella amnii CRIS 21A-A]
 gi|307345658|gb|EFN91017.1| recombination factor protein RarA [Prevotella amnii CRIS 21A-A]
          Length = 422

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 70/146 (47%), Gaps = 22/146 (15%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPR+L+++ GQ         L+  IE+     + +   +  GPPG+GKTTLAQ++A  L
Sbjct: 8   MRPRSLDQYIGQKHLVGKNGVLRRMIES-----KHISSFILWGPPGVGKTTLAQIIANML 62

Query: 79  GVNFRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
              F S S           VI +A       TN     ++FIDEIHR S   ++ L  A+
Sbjct: 63  ETPFYSVSAVTSGVKEVREVIERAKGNRFFSTN---SPIIFIDEIHRFSRAQQDSLLDAV 119

Query: 130 EDFQLDLM--VGEGPSARSVKINLSR 153
           E   + L+    E PS   +   LSR
Sbjct: 120 EKGIVTLIGATTENPSFEVITPLLSR 145


>gi|294655887|ref|XP_458100.2| DEHA2C09570p [Debaryomyces hansenii CBS767]
 gi|199430686|emb|CAG86171.2| DEHA2C09570p [Debaryomyces hansenii]
          Length = 842

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 64/130 (49%), Gaps = 29/130 (22%)

Query: 21  LLRPRTLEEFTGQVEACSN----LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           ++RP++L E  GQ    +N    +K FI     R   L  ++  GPPG+GKT++A ++A+
Sbjct: 161 VIRPKSLNEVIGQTHLINNHNGTIKNFI-----RLGYLPSMILHGPPGVGKTSIASILAQ 215

Query: 77  ELG---VNFRSTSGPVIAKAGDLAALLTNLEDRD-------------VLFIDEIHRLSII 120
           E G   V F +T   V     DL  L   +E  +             V+FIDEIHR +  
Sbjct: 216 ETGYVFVEFSATDATV----SDLKELSITIEKENRKRSKKDMEYLRVVVFIDEIHRFTKT 271

Query: 121 VEEILYPAME 130
            ++ L P +E
Sbjct: 272 QQDFLLPFIE 281


>gi|332295959|ref|YP_004437882.1| AAA ATPase central domain protein [Thermodesulfobium narugense DSM
           14796]
 gi|332179062|gb|AEE14751.1| AAA ATPase central domain protein [Thermodesulfobium narugense DSM
           14796]
          Length = 420

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 71/128 (55%), Gaps = 18/128 (14%)

Query: 16  DADISL---LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           +++ISL   +RP+ L+EF GQ   +     +   I  AK R+     V+  GPPG+GKTT
Sbjct: 6   ESEISLSQAIRPKNLDEFLGQSHLLRKDGTIYKSIVNAKLRS-----VILYGPPGVGKTT 60

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTN-LEDRD-----VLFIDEIHRLSIIVEE 123
           LA+++A     NF   +  V++   +L  ++   ++D+      +LF+DE+HR +   ++
Sbjct: 61  LAKIIASYSKANFEILNA-VLSGVPELRKIIEKAIDDKKRGIETLLFVDEVHRWNKAQQD 119

Query: 124 ILYPAMED 131
            L P +ED
Sbjct: 120 ALLPVLED 127


>gi|297155792|gb|ADI05504.1| recombination factor protein RarA [Streptomyces bingchenggensis
           BCW-1]
          Length = 533

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 61/127 (48%), Gaps = 11/127 (8%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL+E  GQ   +   S L+  +            V   GPPG+GKTTLA VV++  
Sbjct: 27  MRPRTLDEVVGQQHLLRPGSPLRRLVGEGSGGPAGPSSVFLWGPPGIGKTTLAYVVSQAT 86

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLSIIVEEILYPAMED 131
              F   S  + A   ++ A++              VLF+DEIHR S   ++ L PA+E+
Sbjct: 87  QKRFVELSA-ITAGVKEVRAVIDGARRSSGAYGRETVLFLDEIHRFSKAQQDSLLPAVEN 145

Query: 132 FQLDLMV 138
             + L+ 
Sbjct: 146 RWVTLIA 152


>gi|294852541|ref|ZP_06793214.1| ATPase [Brucella sp. NVSL 07-0026]
 gi|294821130|gb|EFG38129.1| ATPase [Brucella sp. NVSL 07-0026]
          Length = 437

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 95/209 (45%), Gaps = 30/209 (14%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E TGQ        V      +   +L  ++F GPPG GKTT+A+++A E  + 
Sbjct: 23  LRPKHLSEVTGQEHLTGPEGVLTRMIAS--GSLGSMVFWGPPGTGKTTVARLLAGETDLA 80

Query: 82  FRSTSGPVIAKAGDL-----AALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F   S  + +   DL     AA    +  R  +LF+DEIHR +   ++   P MED  + 
Sbjct: 81  FEQISA-IFSGVADLKRVFEAARARRMSGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTV- 138

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           +++G      S ++N       A  +R  +LT             + ++ E + T+++R 
Sbjct: 139 ILIGATTENPSFELN------AALLSRARVLT------------FHPHDSESIATLLKRA 180

Query: 196 AKLTG--LAVTDEAACEIAMRSRGTPRIA 222
            +  G  L + DEA   +   + G  R A
Sbjct: 181 EEQEGQALPLDDEARASLIRMADGDGRAA 209


>gi|23502083|ref|NP_698210.1| recombination factor protein RarA [Brucella suis 1330]
 gi|161619161|ref|YP_001593048.1| recombination factor protein RarA [Brucella canis ATCC 23365]
 gi|254704491|ref|ZP_05166319.1| recombination factor protein RarA [Brucella suis bv. 3 str. 686]
 gi|260566265|ref|ZP_05836735.1| ATPase [Brucella suis bv. 4 str. 40]
 gi|261755173|ref|ZP_05998882.1| recombination factor protein RarA [Brucella suis bv. 3 str. 686]
 gi|23348042|gb|AAN30125.1| ATPase, AAA family [Brucella suis 1330]
 gi|161335972|gb|ABX62277.1| AAA ATPase central domain protein [Brucella canis ATCC 23365]
 gi|260155783|gb|EEW90863.1| ATPase [Brucella suis bv. 4 str. 40]
 gi|261744926|gb|EEY32852.1| recombination factor protein RarA [Brucella suis bv. 3 str. 686]
          Length = 437

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 95/209 (45%), Gaps = 30/209 (14%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E TGQ        V      +   +L  ++F GPPG GKTT+A+++A E  + 
Sbjct: 23  LRPKHLSEVTGQEHLTGPEGVLTRMIAS--GSLGSMVFWGPPGTGKTTVARLLAGETDLA 80

Query: 82  FRSTSGPVIAKAGDL-----AALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F   S  + +   DL     AA    +  R  +LF+DEIHR +   ++   P MED  + 
Sbjct: 81  FEQISA-IFSGVADLKRVFEAARARRMSGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTV- 138

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           +++G      S ++N       A  +R  +LT             + ++ E + T+++R 
Sbjct: 139 ILIGATTENPSFELN------AALLSRARVLT------------FHPHDSESIATLLKRA 180

Query: 196 AKLTG--LAVTDEAACEIAMRSRGTPRIA 222
            +  G  L + DEA   +   + G  R A
Sbjct: 181 EEQEGQALPLDDEARASLIRMADGDGRAA 209


>gi|146278540|ref|YP_001168699.1| recombination factor protein RarA [Rhodobacter sphaeroides ATCC
           17025]
 gi|145556781|gb|ABP71394.1| Recombination protein MgsA [Rhodobacter sphaeroides ATCC 17025]
          Length = 437

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 73/144 (50%), Gaps = 11/144 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L+E  GQ +  S        A   + +L  ++  GPPG+GKTT+A+++A+E  + 
Sbjct: 24  LRPKALDEVIGQEKVLSPDGPL--GAMLASGSLSSLILWGPPGVGKTTIARLLAKETDLA 81

Query: 82  FRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           F   S      P + K  + A L        +LF+DEIHR +   ++   P MED  + L
Sbjct: 82  FVQISAIFTGVPDLRKVFEAARLRRANGQGTLLFVDEIHRFNKAQQDGFLPHMEDGTI-L 140

Query: 137 MVGEGPSARSVKIN---LSRFTLI 157
           +VG      S ++N   +SR  +I
Sbjct: 141 LVGATTENPSFELNAALMSRAQVI 164


>gi|257094688|ref|YP_003168329.1| AAA ATPase central domain-containing protein [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257047212|gb|ACV36400.1| AAA ATPase central domain protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 439

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 69/144 (47%), Gaps = 12/144 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPRTL E  GQ    +  K    A ++    L  ++  GPPG+GKTTLA+++A     +
Sbjct: 19  LRPRTLAEVIGQTHLLAPGKPLATAFQS--GQLHSMILWGPPGVGKTTLARLMADAFDAD 76

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F + S  V +   D+ A +   E        R +LF+DE+HR +   ++   P +E   L
Sbjct: 77  FMALSA-VFSGVKDIRAAVARAETTRALSGRRTILFVDEVHRFNKAQQDAFLPYVEGGLL 135

Query: 135 DLM--VGEGPSARSVKINLSRFTL 156
             +    E PS       LSR ++
Sbjct: 136 TFVGATTENPSFEVNSALLSRASV 159


>gi|71897620|ref|ZP_00679865.1| AAA ATPase, central region [Xylella fastidiosa Ann-1]
 gi|71732523|gb|EAO34576.1| AAA ATPase, central region [Xylella fastidiosa Ann-1]
          Length = 455

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 14/137 (10%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV---LFVGPPGLGKTTLAQVVAREL 78
           +RPRTL E  GQ    +      + A  RA A  HV   +  GPPG GKTTL+ ++A  +
Sbjct: 27  MRPRTLHEMVGQKRLLAP-----DRALHRAVASGHVHSMILWGPPGCGKTTLSLLLAHYI 81

Query: 79  GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
              FRS S      P + +    AA   +   R VLF+DE+HR + + ++   P +E   
Sbjct: 82  DAEFRSVSAVLSGLPEVRQILAEAAQRFSEGRRTVLFVDEVHRFNKMQQDAFLPHIERGS 141

Query: 134 LDLMVGEGPSARSVKIN 150
           + + VG      S ++N
Sbjct: 142 I-IFVGATTENPSFELN 157


>gi|319426382|gb|ADV54456.1| AAA ATPase central domain protein [Shewanella putrefaciens 200]
          Length = 443

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 69/265 (26%), Positives = 121/265 (45%), Gaps = 41/265 (15%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPR++ E+ GQ         L+  +EA +A +     ++  GPPG GKTTLA+++A+  
Sbjct: 19  MRPRSIAEYIGQAHLLGEGQPLRKALEAGRAHS-----MMLWGPPGTGKTTLAELIAQYS 73

Query: 79  GVNFRS----TSG--PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
             +       TSG   + A      A+  +   R +LF+DE+HR +   ++   P +ED 
Sbjct: 74  NAHVERISAVTSGVKEIRAAIEQAKAIAESRGQRTLLFVDEVHRFNKSQQDAFLPFIEDG 133

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI- 191
            + + +G      S +IN      + +  RV L+            RL+  EI  + T  
Sbjct: 134 TV-IFIGATTENPSFEIN----NALLSRARVYLIK-----------RLSNDEIAHIVTQA 177

Query: 192 ---VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
               +RG  L  L + +    ++A    G  R A  LL  + D   V+   T T E+   
Sbjct: 178 LADTERGLGLRQLEMPENVLIKLAQLCDGDARKALNLLELMSDM--VSDNDTFTHEM--- 232

Query: 249 ALLRLAIDKM-GFDQLDLRYLTMIA 272
            L+++A  ++ GFD+   ++  +I+
Sbjct: 233 -LVQVAGHQVAGFDKNGDQFYDLIS 256


>gi|299532556|ref|ZP_07045946.1| recombination factor protein RarA [Comamonas testosteroni S44]
 gi|298719503|gb|EFI60470.1| recombination factor protein RarA [Comamonas testosteroni S44]
          Length = 446

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 83/327 (25%), Positives = 133/327 (40%), Gaps = 60/327 (18%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP TL E  GQ         L++  E+ +  +      +  GPPG+GKTT+A+++A   
Sbjct: 21  LRPHTLAEVIGQQHVLGEGMPLRLAFESGRPHS-----CILWGPPGVGKTTIARLMADAF 75

Query: 79  GVNFRSTSGPVIAKAGDL--------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
              F S S  V+    D+        AA    L+ R ++F+DE+HR +   ++   P +E
Sbjct: 76  DAQFISISA-VLGGVKDIREAVEQAQAAQSGLLQQRTIVFVDEVHRFNKSQQDAFLPHVE 134

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL--LTNPLQDRFGIPIRLNFYEIEDL 188
                                  FT I ATT      + + L  R  + + L     +DL
Sbjct: 135 S--------------------GLFTFIGATTENPSFEVNSALLSRAAVYV-LQSLTPDDL 173

Query: 189 KTIVQRGAKLTGL-AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           K IV +   +  + A+ DEA   +   + G  R     L  +   AE A  ++IT    D
Sbjct: 174 KQIVAKAQAIQAIPAIEDEALERLIAYADGDARRLLNTLETLSITAEQAGVQSIT----D 229

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           A LL++  ++M              R   GG    +TISA     R +  D    +  + 
Sbjct: 230 AWLLKVLGERM-------------RRYDKGGEQFYDTISALHKSVRGSDPDAALYWFCRM 276

Query: 308 GFIQRTPR--GRLLMPIAWQHLGIDIP 332
                 PR   R ++ +AW+ +G+  P
Sbjct: 277 LDGGADPRYLARRIVRMAWEDIGLADP 303


>gi|326803422|ref|YP_004321240.1| ATPase, AAA family [Aerococcus urinae ACS-120-V-Col10a]
 gi|326651019|gb|AEA01202.1| ATPase, AAA family [Aerococcus urinae ACS-120-V-Col10a]
          Length = 424

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 67/138 (48%), Gaps = 20/138 (14%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+TLEE  GQ     + K+     KA+   L  ++  GPPG+GKT++A  +A    ++
Sbjct: 11  MRPKTLEEVVGQGHLVGSGKIIWRMVKAKQ--LRSMILYGPPGIGKTSIASAIAGSTKLS 68

Query: 82  FRSTSGP---------VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           FR  +           V+A+A    +L        +L +DEIHRL    ++ L P +E  
Sbjct: 69  FRQLNAATDNKKALQEVVAEAKFSGSL--------ILMLDEIHRLDKTKQDFLLPHLESG 120

Query: 133 QLDLMVGEGPSARSVKIN 150
            L +++G       + IN
Sbjct: 121 LL-ILIGATTENPYININ 137


>gi|17987067|ref|NP_539701.1| recombination factor protein RarA [Brucella melitensis bv. 1 str.
           16M]
 gi|17982724|gb|AAL51965.1| atpase associated with chromosome architecture/replication
           [Brucella melitensis bv. 1 str. 16M]
          Length = 457

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 95/209 (45%), Gaps = 30/209 (14%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E TGQ        V      +   +L  ++F GPPG GKTT+A+++A E  + 
Sbjct: 43  LRPKHLSEVTGQEHLTGPEGVLTRMIAS--GSLGSMVFWGPPGTGKTTVARLLAGETDLA 100

Query: 82  FRSTSGPVIAKAGDL-----AALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F   S  + +   DL     AA    +  R  +LF+DEIHR +   ++   P MED  + 
Sbjct: 101 FEQISA-IFSGVADLKRVFEAARARRMSGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTV- 158

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           +++G      S ++N       A  +R  +LT             + ++ E + T+++R 
Sbjct: 159 ILIGATTENPSFELN------AALLSRARVLT------------FHPHDSESIATLLKRA 200

Query: 196 AKLTG--LAVTDEAACEIAMRSRGTPRIA 222
            +  G  L + DEA   +   + G  R A
Sbjct: 201 EEQEGQALPLDDEARASLIRMADGDGRAA 229


>gi|62290117|ref|YP_221910.1| recombination factor protein RarA [Brucella abortus bv. 1 str.
           9-941]
 gi|82700040|ref|YP_414614.1| recombination factor protein RarA [Brucella melitensis biovar
           Abortus 2308]
 gi|189024355|ref|YP_001935123.1| recombination factor protein RarA [Brucella abortus S19]
 gi|254689426|ref|ZP_05152680.1| recombination factor protein RarA [Brucella abortus bv. 6 str. 870]
 gi|254693911|ref|ZP_05155739.1| recombination factor protein RarA [Brucella abortus bv. 3 str.
           Tulya]
 gi|254697561|ref|ZP_05159389.1| recombination factor protein RarA [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254730455|ref|ZP_05189033.1| recombination factor protein RarA [Brucella abortus bv. 4 str. 292]
 gi|256257672|ref|ZP_05463208.1| recombination factor protein RarA [Brucella abortus bv. 9 str. C68]
 gi|260546665|ref|ZP_05822404.1| ATPase [Brucella abortus NCTC 8038]
 gi|260754949|ref|ZP_05867297.1| recombination factor protein RarA [Brucella abortus bv. 6 str. 870]
 gi|260758165|ref|ZP_05870513.1| recombination factor protein RarA [Brucella abortus bv. 4 str. 292]
 gi|260761991|ref|ZP_05874334.1| recombination factor protein RarA [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260883958|ref|ZP_05895572.1| recombination factor protein RarA [Brucella abortus bv. 9 str. C68]
 gi|261214202|ref|ZP_05928483.1| recombination factor protein RarA [Brucella abortus bv. 3 str.
           Tulya]
 gi|297248512|ref|ZP_06932230.1| recombination factor protein RarA [Brucella abortus bv. 5 str.
           B3196]
 gi|62196249|gb|AAX74549.1| ATPase, AAA family [Brucella abortus bv. 1 str. 9-941]
 gi|82616141|emb|CAJ11184.1| Shikimate kinase:Replication factor C conserved
           domain:ATP/GTP-binding site motif A (P-loop):AAA
           ATPase:AAA ATPase, central r [Brucella melitensis biovar
           Abortus 2308]
 gi|189019927|gb|ACD72649.1| ATPase, AAA family [Brucella abortus S19]
 gi|260095715|gb|EEW79592.1| ATPase [Brucella abortus NCTC 8038]
 gi|260668483|gb|EEX55423.1| recombination factor protein RarA [Brucella abortus bv. 4 str. 292]
 gi|260672423|gb|EEX59244.1| recombination factor protein RarA [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260675057|gb|EEX61878.1| recombination factor protein RarA [Brucella abortus bv. 6 str. 870]
 gi|260873486|gb|EEX80555.1| recombination factor protein RarA [Brucella abortus bv. 9 str. C68]
 gi|260915809|gb|EEX82670.1| recombination factor protein RarA [Brucella abortus bv. 3 str.
           Tulya]
 gi|297175681|gb|EFH35028.1| recombination factor protein RarA [Brucella abortus bv. 5 str.
           B3196]
          Length = 437

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 95/209 (45%), Gaps = 30/209 (14%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E TGQ        V      +   +L  ++F GPPG GKTT+A+++A E  + 
Sbjct: 23  LRPKHLSEVTGQEHLTGPEGVLTRMIAS--GSLGSMVFWGPPGTGKTTVARLLAGETDLA 80

Query: 82  FRSTSGPVIAKAGDL-----AALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F   S  + +   DL     AA    +  R  +LF+DEIHR +   ++   P MED  + 
Sbjct: 81  FEQISA-IFSGVADLKRVFEAARARRMSGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTV- 138

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           +++G      S ++N       A  +R  +LT             + ++ E + T+++R 
Sbjct: 139 ILIGATTENPSFELN------AALLSRARVLT------------FHPHDSESIATLLKRA 180

Query: 196 AKLTG--LAVTDEAACEIAMRSRGTPRIA 222
            +  G  L + DEA   +   + G  R A
Sbjct: 181 EEQEGQALPLDDEARASLIRMADGDGRAA 209


>gi|262202249|ref|YP_003273457.1| ATPase AAA [Gordonia bronchialis DSM 43247]
 gi|262085596|gb|ACY21564.1| AAA ATPase central domain protein [Gordonia bronchialis DSM 43247]
          Length = 460

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/144 (34%), Positives = 76/144 (52%), Gaps = 19/144 (13%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP++L+E  GQ   + A S L+  I  + A +     VL  GPPG GKTT+A +++R  
Sbjct: 33  MRPQSLDEIVGQQHLLGAGSPLRRLISGSGAAS-----VLLYGPPGTGKTTMASLISRAT 87

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDF 132
           G  F + S  + A   ++ A++     R       VLFIDE+HR S   ++ L  A+E+ 
Sbjct: 88  GGRFEALSA-LSAGVKEVRAVIDIARRRLVEGQQTVLFIDEVHRFSKTQQDALLDAVEN- 145

Query: 133 QLDLMVG---EGPSARSVKINLSR 153
           ++ L+V    E PS   V   LSR
Sbjct: 146 RIVLLVAATTENPSFSVVAPLLSR 169


>gi|21113093|gb|AAM41265.1| ATPase [Xanthomonas campestris pv. campestris str. ATCC 33913]
 gi|66573854|gb|AAY49264.1| ATPase [Xanthomonas campestris pv. campestris str. 8004]
          Length = 428

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 70/138 (50%), Gaps = 16/138 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL+E  GQ   + A S L+  +E+ +  +     ++  GPPG GKTTLA ++A   
Sbjct: 1   MRPRTLDEMVGQKRLLAADSALRRAVESGRVHS-----MILWGPPGCGKTTLALLLAHYA 55

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDF 132
              F++ S  V++   D+  +L           R VLF+DE+HR +   ++   P +E  
Sbjct: 56  DAEFKAISA-VLSGLPDVRQVLAEAAQRFASGRRTVLFVDEVHRFNKAQQDAFLPHIERG 114

Query: 133 QLDLMVGEGPSARSVKIN 150
            + L VG      S ++N
Sbjct: 115 TI-LFVGATTENPSFELN 131


>gi|24373860|ref|NP_717903.1| recombination factor protein RarA [Shewanella oneidensis MR-1]
 gi|24348271|gb|AAN55347.1|AE015672_3 ATPase, AAA family [Shewanella oneidensis MR-1]
          Length = 445

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 116/262 (44%), Gaps = 35/262 (13%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRT+ E+ GQ         L+  +EA +A +     ++  GPPG GKTTLA+++A   
Sbjct: 21  MRPRTIAEYIGQAHLLGEGQPLRQALEAGRAHS-----MMLWGPPGTGKTTLAELIAHYS 75

Query: 79  GVNFRSTSGPVIAKAGDL-------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
             +    S  V +   D+        A+  +   R +LF+DE+HR +   ++   P +ED
Sbjct: 76  NAHVERISA-VTSGVKDIRGAIEQAQAIAQSRGQRTLLFVDEVHRFNKSQQDAFLPFIED 134

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
             + + +G      S +IN      + +  RV L+    QD          + I      
Sbjct: 135 GTV-IFIGATTENPSFEIN----NALLSRARVYLIKRLSQDEI-------VHIITQALAD 182

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
            +RG     L +  +   ++A    G  R A  LL  + D   VA   T T E+    L+
Sbjct: 183 TERGLGQRALNMPTDVLNKLAQLCDGDARKALNLLELMSDM--VADGGTFTTEM----LV 236

Query: 252 RLAIDKM-GFDQLDLRYLTMIA 272
           ++A  ++ GFD+   ++  +I+
Sbjct: 237 QVAGHQVAGFDKNGDQFYDLIS 258


>gi|229111872|ref|ZP_04241418.1| hypothetical protein bcere0018_41160 [Bacillus cereus Rock1-15]
 gi|229146970|ref|ZP_04275334.1| hypothetical protein bcere0012_41090 [Bacillus cereus BDRD-ST24]
 gi|228636569|gb|EEK93035.1| hypothetical protein bcere0012_41090 [Bacillus cereus BDRD-ST24]
 gi|228671628|gb|EEL26926.1| hypothetical protein bcere0018_41160 [Bacillus cereus Rock1-15]
          Length = 476

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 87/350 (24%), Positives = 137/350 (39%), Gaps = 65/350 (18%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           ++R+ +L   V  +      +RP  ++E  GQ       K+     +A       ++  G
Sbjct: 37  IERDYILRETVQMKQPLAHRMRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYG 94

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSI 119
           PPG GKT++A  +A   G  FR  +  V     D+  ++    +    VL +DE+HRL  
Sbjct: 95  PPGTGKTSIASAIAGSTGTPFRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDK 153

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPI 178
             ++ L P +E   L                    TLI ATT     +NP       I  
Sbjct: 154 AKQDFLLPHLESGLL--------------------TLIGATT-----SNPFHAINSAIRS 188

Query: 179 RLNFYEI-----EDLKTIVQR-------GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
           R   +E+     ED+   ++R       G     + VTDEA    A  S G  R A   L
Sbjct: 189 RCQIFELHALTEEDILIGLKRALEDKEKGLGEYAVTVTDEALHHFANASGGDMRSAYNAL 248

Query: 227 RR--VRDFAEVAHAKTITREIADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGI 282
               +  F     A  IT EIA+  L + +   DK G    D+  L+   ++  G  V  
Sbjct: 249 ELAVLSSFTTDDQAAEITLEIAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDVNA 306

Query: 283 ETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
                       A+  L    +I+ G +Q    GR L+ +A++ +G+  P
Sbjct: 307 ------------ALHYLAR--LIEAGDLQSI--GRRLLIMAYEDIGLASP 340


>gi|332185004|ref|ZP_08386753.1| ATPase associated with various cellular activities family protein
           [Sphingomonas sp. S17]
 gi|332014728|gb|EGI56784.1| ATPase associated with various cellular activities family protein
           [Sphingomonas sp. S17]
          Length = 447

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/133 (33%), Positives = 65/133 (48%), Gaps = 17/133 (12%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKAR---AEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP  LE+  GQ           E A  R   A  L  ++  GPPG GKTT+A+++A E+
Sbjct: 27  LRPERLEDVVGQDHLTGP-----EGAIGRMVAAGRLSSMILWGPPGTGKTTIARLLAAEV 81

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDF 132
           G+ F + S  V +   DL  +     D      R +LF+DEIHR +   ++   P +ED 
Sbjct: 82  GLRFAAISA-VFSGVADLKKVFAEARDHARAGQRTLLFVDEIHRFNRAQQDGFLPFVEDG 140

Query: 133 QLDLM--VGEGPS 143
            + L+    E PS
Sbjct: 141 TVTLVGATTENPS 153


>gi|254786027|ref|YP_003073456.1| recombination factor protein RarA [Teredinibacter turnerae T7901]
 gi|237686731|gb|ACR13995.1| ATPase, AAA family [Teredinibacter turnerae T7901]
          Length = 447

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 69/141 (48%), Gaps = 21/141 (14%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH-----VLFVGPPGLGKTTLAQVVAR 76
           LRPR L+E+ GQ       +  + A K   +A+ H     ++  GPPG+GKT+LA+++A 
Sbjct: 22  LRPRNLDEYLGQ-------EHLLGAGKPLRQAIAHGQIHSMILWGPPGIGKTSLARLLAN 74

Query: 77  ELGVNFRSTSGPVIAKAGDL-------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           E    F S S  V+A   D+                + +LF+DE+HR +   ++   P +
Sbjct: 75  EANAFFLSISA-VLAGVKDIRDAVQQARQQQQAYGRKTILFVDEVHRFNKSQQDAFLPYV 133

Query: 130 EDFQLDLMVGEGPSARSVKIN 150
           ED  + L VG      S ++N
Sbjct: 134 EDGTI-LFVGATTENPSFEVN 153


>gi|298346857|ref|YP_003719544.1| crossover junction endodeoxyribonuclease ATPase [Mobiluncus
           curtisii ATCC 43063]
 gi|315655402|ref|ZP_07908302.1| replication-associated recombination protein A [Mobiluncus curtisii
           ATCC 51333]
 gi|298236918|gb|ADI68050.1| crossover junction endodeoxyribonuclease ATPase [Mobiluncus
           curtisii ATCC 43063]
 gi|315490342|gb|EFU79967.1| replication-associated recombination protein A [Mobiluncus curtisii
           ATCC 51333]
          Length = 445

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 8/117 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR +EE  GQ    +         +   E    V+  GPPG GKTTLA +VA+  G +
Sbjct: 27  MRPRNVEELVGQSHLLAPNSPLQRLLRGDTEMTSSVILYGPPGTGKTTLAYLVAQAGGRD 86

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131
           +   S  + A   ++  ++   + R        +LF+DE+HR S   ++ L PA+E+
Sbjct: 87  YAQLSA-INAGVKEVREVINAAKQRLSLSGQETILFLDEVHRFSKSQQDSLLPAVEN 142


>gi|224501546|ref|ZP_03669853.1| recombination factor protein RarA [Listeria monocytogenes FSL
           R2-561]
          Length = 425

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 4/130 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L+E  GQ       K+     KA+   L  ++  GPPG+GKT++A  +A      
Sbjct: 10  MRPKALDEIVGQTHLVGKDKIINRMVKAKQ--LSSMILYGPPGIGKTSIASAIAGSTKYA 67

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR+ +     K   ++ A    +    +L +DE+HRL    ++ L P +E   + +++G 
Sbjct: 68  FRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQDFLLPLLESGAI-ILIGA 126

Query: 141 GPSARSVKIN 150
             S   + IN
Sbjct: 127 TTSNPYIAIN 136


>gi|148559570|ref|YP_001259126.1| recombination factor protein RarA [Brucella ovis ATCC 25840]
 gi|163843471|ref|YP_001627875.1| recombination factor protein RarA [Brucella suis ATCC 23445]
 gi|225852702|ref|YP_002732935.1| recombination factor protein RarA [Brucella melitensis ATCC 23457]
 gi|254701946|ref|ZP_05163774.1| recombination factor protein RarA [Brucella suis bv. 5 str. 513]
 gi|254706613|ref|ZP_05168441.1| recombination factor protein RarA [Brucella pinnipedialis
           M163/99/10]
 gi|254710277|ref|ZP_05172088.1| recombination factor protein RarA [Brucella pinnipedialis B2/94]
 gi|256031771|ref|ZP_05445385.1| recombination factor protein RarA [Brucella pinnipedialis
           M292/94/1]
 gi|256061286|ref|ZP_05451436.1| recombination factor protein RarA [Brucella neotomae 5K33]
 gi|256113760|ref|ZP_05454564.1| recombination factor protein RarA [Brucella melitensis bv. 3 str.
           Ether]
 gi|256159941|ref|ZP_05457659.1| recombination factor protein RarA [Brucella ceti M490/95/1]
 gi|256255172|ref|ZP_05460708.1| recombination factor protein RarA [Brucella ceti B1/94]
 gi|256263807|ref|ZP_05466339.1| ATPase [Brucella melitensis bv. 2 str. 63/9]
 gi|256369630|ref|YP_003107140.1| ATPase, AAA family [Brucella microti CCM 4915]
 gi|260168905|ref|ZP_05755716.1| recombination factor protein RarA [Brucella sp. F5/99]
 gi|261222368|ref|ZP_05936649.1| recombination factor protein RarA [Brucella ceti B1/94]
 gi|261314073|ref|ZP_05953270.1| recombination factor protein RarA [Brucella pinnipedialis
           M163/99/10]
 gi|261317839|ref|ZP_05957036.1| recombination factor protein RarA [Brucella pinnipedialis B2/94]
 gi|261325293|ref|ZP_05964490.1| recombination factor protein RarA [Brucella neotomae 5K33]
 gi|261752514|ref|ZP_05996223.1| recombination factor protein RarA [Brucella suis bv. 5 str. 513]
 gi|261758397|ref|ZP_06002106.1| ATPase [Brucella sp. F5/99]
 gi|265988869|ref|ZP_06101426.1| recombination factor protein RarA [Brucella pinnipedialis
           M292/94/1]
 gi|265995120|ref|ZP_06107677.1| recombination factor protein RarA [Brucella melitensis bv. 3 str.
           Ether]
 gi|265998333|ref|ZP_06110890.1| recombination factor protein RarA [Brucella ceti M490/95/1]
 gi|148370827|gb|ABQ60806.1| ATPase, AAA family [Brucella ovis ATCC 25840]
 gi|163674194|gb|ABY38305.1| AAA ATPase central domain protein [Brucella suis ATCC 23445]
 gi|225641067|gb|ACO00981.1| AAA ATPase central domain protein [Brucella melitensis ATCC 23457]
 gi|255999792|gb|ACU48191.1| ATPase, AAA family [Brucella microti CCM 4915]
 gi|260920952|gb|EEX87605.1| recombination factor protein RarA [Brucella ceti B1/94]
 gi|261297062|gb|EEY00559.1| recombination factor protein RarA [Brucella pinnipedialis B2/94]
 gi|261301273|gb|EEY04770.1| recombination factor protein RarA [Brucella neotomae 5K33]
 gi|261303099|gb|EEY06596.1| recombination factor protein RarA [Brucella pinnipedialis
           M163/99/10]
 gi|261738381|gb|EEY26377.1| ATPase [Brucella sp. F5/99]
 gi|261742267|gb|EEY30193.1| recombination factor protein RarA [Brucella suis bv. 5 str. 513]
 gi|262552801|gb|EEZ08791.1| recombination factor protein RarA [Brucella ceti M490/95/1]
 gi|262766233|gb|EEZ12022.1| recombination factor protein RarA [Brucella melitensis bv. 3 str.
           Ether]
 gi|263093935|gb|EEZ17869.1| ATPase [Brucella melitensis bv. 2 str. 63/9]
 gi|264661066|gb|EEZ31327.1| recombination factor protein RarA [Brucella pinnipedialis
           M292/94/1]
 gi|326538935|gb|ADZ87150.1| AAA ATPase central domain protein [Brucella melitensis M5-90]
          Length = 437

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 95/209 (45%), Gaps = 30/209 (14%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E TGQ        V      +   +L  ++F GPPG GKTT+A+++A E  + 
Sbjct: 23  LRPKHLSEVTGQEHLTGPEGVLTRMIAS--GSLGSMVFWGPPGTGKTTVARLLAGETDLA 80

Query: 82  FRSTSGPVIAKAGDL-----AALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F   S  + +   DL     AA    +  R  +LF+DEIHR +   ++   P MED  + 
Sbjct: 81  FEQISA-IFSGVADLKRVFEAARARRMSGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTV- 138

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           +++G      S ++N       A  +R  +LT             + ++ E + T+++R 
Sbjct: 139 ILIGATTENPSFELN------AALLSRARVLT------------FHPHDSESIATLLKRA 180

Query: 196 AKLTG--LAVTDEAACEIAMRSRGTPRIA 222
            +  G  L + DEA   +   + G  R A
Sbjct: 181 EEQEGQALPLDDEARASLIRMADGDGRAA 209


>gi|16803554|ref|NP_465039.1| recombination factor protein RarA [Listeria monocytogenes EGD-e]
 gi|16410943|emb|CAC99592.1| lmo1514 [Listeria monocytogenes EGD-e]
          Length = 425

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 4/130 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L+E  GQ       K+     KA+   L  ++  GPPG+GKT++A  +A      
Sbjct: 10  MRPKALDEIVGQTHLVGKDKIINRMVKAKQ--LSSMILYGPPGIGKTSIASAIAGSTKYA 67

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR+ +     K   ++ A    +    +L +DE+HRL    ++ L P +E   + +++G 
Sbjct: 68  FRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQDFLLPLLESGAI-ILIGA 126

Query: 141 GPSARSVKIN 150
             S   + IN
Sbjct: 127 TTSNPYIAIN 136


>gi|254714274|ref|ZP_05176085.1| recombination factor protein RarA [Brucella ceti M644/93/1]
 gi|254717711|ref|ZP_05179522.1| recombination factor protein RarA [Brucella ceti M13/05/1]
 gi|261219553|ref|ZP_05933834.1| recombination factor protein RarA [Brucella ceti M13/05/1]
 gi|261322048|ref|ZP_05961245.1| recombination factor protein RarA [Brucella ceti M644/93/1]
 gi|260924642|gb|EEX91210.1| recombination factor protein RarA [Brucella ceti M13/05/1]
 gi|261294738|gb|EEX98234.1| recombination factor protein RarA [Brucella ceti M644/93/1]
          Length = 437

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 95/209 (45%), Gaps = 30/209 (14%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E TGQ        V      +   +L  ++F GPPG GKTT+A+++A E  + 
Sbjct: 23  LRPKHLSEVTGQEHLTGPEGVLTRMIAS--GSLGSMVFWGPPGTGKTTVARLLAGETDLA 80

Query: 82  FRSTSGPVIAKAGDL-----AALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F   S  + +   DL     AA    +  R  +LF+DEIHR +   ++   P MED  + 
Sbjct: 81  FEQISA-IFSGVADLKRVFEAARARRMSGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTV- 138

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           +++G      S ++N       A  +R  +LT             + ++ E + T+++R 
Sbjct: 139 ILIGATTENPSFELN------AALLSRARVLT------------FHPHDSESIATLLKRA 180

Query: 196 AKLTG--LAVTDEAACEIAMRSRGTPRIA 222
            +  G  L + DEA   +   + G  R A
Sbjct: 181 EEQEGQALPLDDEARASLIRMADGDGRAA 209


>gi|254423935|ref|ZP_05037653.1| ATPase, AAA family protein [Synechococcus sp. PCC 7335]
 gi|196191424|gb|EDX86388.1| ATPase, AAA family protein [Synechococcus sp. PCC 7335]
          Length = 742

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 61/117 (52%), Gaps = 10/117 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR+L EF GQ       ++   A +A  + L  ++F GPPG GKTTLA+V+A      
Sbjct: 22  MRPRSLIEFIGQDAIVGPGRLLRRAIEA--DQLSSLIFYGPPGTGKTTLAKVIANTTMAQ 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131
           F + +  V+    D+   +   +        R +LF+DE+HR +   ++ L P +E+
Sbjct: 80  FVAINA-VLGGVKDIRFAIEQAQTHRGQFGRRTILFVDEVHRFNKAQQDALLPWVEN 135


>gi|300778766|ref|ZP_07088624.1| replication-associated recombination protein A [Chryseobacterium
           gleum ATCC 35910]
 gi|300504276|gb|EFK35416.1| replication-associated recombination protein A [Chryseobacterium
           gleum ATCC 35910]
          Length = 425

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 73/144 (50%), Gaps = 18/144 (12%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL +  GQ     +   ++  IE        L+ ++F GPPG GKTTLA++++ + 
Sbjct: 11  LRPKTLNDVLGQEHLTGDKGTIRKMIEN-----NTLNSLIFWGPPGTGKTTLAEIISEQS 65

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLSIIVEEILYPAMED 131
           G  F   S  V +   D+  ++ + + ++       +LFIDEIHR +   ++ L  A+E 
Sbjct: 66  GRKFYKLSA-VSSGVKDVRDVIEDAKKQNLFSGKSPILFIDEIHRFNKSQQDSLLHAVEK 124

Query: 132 FQLDLM--VGEGPSARSVKINLSR 153
             + L+    E PS   V   LSR
Sbjct: 125 GWIVLIGATTENPSFEVVSALLSR 148


>gi|328543386|ref|YP_004303495.1| ATPase, AAA family protein [polymorphum gilvum SL003B-26A1]
 gi|326413131|gb|ADZ70194.1| ATPase, AAA family protein [Polymorphum gilvum SL003B-26A1]
          Length = 436

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 60/130 (46%), Gaps = 11/130 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPR LE+  GQ              K R   L  ++F GPPG GKTT+A+++A    + 
Sbjct: 22  LRPRRLEDVVGQDHLLGPEGTLSRMLKTRT--LGSLIFWGPPGTGKTTIARLLADATDLA 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F   S  + +   DL  +      R       +LF+DEIHR +   ++   P MED  + 
Sbjct: 80  FEQISA-IFSGVADLKKVFETARARRMGGRGTLLFVDEIHRFNRAQQDSFLPVMEDGTIT 138

Query: 136 LM--VGEGPS 143
           L+    E PS
Sbjct: 139 LVGATTENPS 148


>gi|293192677|ref|ZP_06609631.1| ATPase, AAA family [Actinomyces odontolyticus F0309]
 gi|292820184|gb|EFF79181.1| ATPase, AAA family [Actinomyces odontolyticus F0309]
          Length = 447

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 62/133 (46%), Gaps = 11/133 (8%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP TL+E  GQ         L+  +    +   A+  V+  GPPG GKTTLA ++AR  
Sbjct: 27  MRPTTLDEVVGQSHLLGEGAPLRRLLSPGSSDGVAVSSVVLWGPPGTGKTTLAYLIARAS 86

Query: 79  GVNF------RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           G  F       S    V     D    L +     +LF+DE+HR S   ++ L PA+E+ 
Sbjct: 87  GRRFVELSAVSSGVSDVRRVVDDARRTLASGGQETILFVDEVHRFSKSQQDSLLPAVENR 146

Query: 133 QLDLMVG--EGPS 143
            + L+    E PS
Sbjct: 147 WVVLVAATTENPS 159


>gi|237815625|ref|ZP_04594622.1| recombination factor protein RarA [Brucella abortus str. 2308 A]
 gi|237788923|gb|EEP63134.1| recombination factor protein RarA [Brucella abortus str. 2308 A]
          Length = 457

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 95/209 (45%), Gaps = 30/209 (14%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E TGQ        V      +   +L  ++F GPPG GKTT+A+++A E  + 
Sbjct: 43  LRPKHLSEVTGQEHLTGPEGVLTRMIAS--GSLGSMVFWGPPGTGKTTVARLLAGETDLA 100

Query: 82  FRSTSGPVIAKAGDL-----AALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F   S  + +   DL     AA    +  R  +LF+DEIHR +   ++   P MED  + 
Sbjct: 101 FEQISA-IFSGVADLKRVFEAARARRMSGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTV- 158

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           +++G      S ++N       A  +R  +LT             + ++ E + T+++R 
Sbjct: 159 ILIGATTENPSFELN------AALLSRARVLT------------FHPHDSESIATLLKRA 200

Query: 196 AKLTG--LAVTDEAACEIAMRSRGTPRIA 222
            +  G  L + DEA   +   + G  R A
Sbjct: 201 EEQEGQALPLDDEARASLIRMADGDGRAA 229


>gi|332967839|gb|EGK06938.1| replication-associated recombination protein A [Kingella kingae
           ATCC 23330]
          Length = 435

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 59/116 (50%), Gaps = 9/116 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPRTL+E  GQ       K  +  A A  E    +L+ G PG+GKTTLA++VA+  G  
Sbjct: 17  LRPRTLDEVIGQEHLTGEGKP-LRVALASGEPHSMLLW-GSPGIGKTTLARIVAQGFGAQ 74

Query: 82  FRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMED 131
           F   S  V +   D+   +   E       R +LF+DE+HR +   ++   P +E+
Sbjct: 75  FLPLSA-VFSGVKDIREAIQKAEIAWQHGQRTILFVDEVHRFNKSQQDAFLPYVEN 129


>gi|218291271|ref|ZP_03495247.1| AAA ATPase central domain protein [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218238819|gb|EED06031.1| AAA ATPase central domain protein [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 447

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 70/139 (50%), Gaps = 15/139 (10%)

Query: 2   MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHV 57
           MD   L S + ++ +A ++  +RPR+L+E  G          L+  IE  +     L  +
Sbjct: 1   MDLFSLASEHEAEREAPLAYRMRPRSLDEMVGHENLVGRDGILRRMIERDR-----LMSI 55

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRD------VLFI 111
           +  GPPG GKTT+A+V+AR+    F   +      A    A+ T  E+RD      V+F+
Sbjct: 56  ILYGPPGTGKTTIAEVIARQTKARFIPLNAVTSGIADVRKAVETAREERDLYGRRTVVFL 115

Query: 112 DEIHRLSIIVEEILYPAME 130
           DEIHR +   ++ L P +E
Sbjct: 116 DEIHRFNKNQQDALLPHVE 134


>gi|154509637|ref|ZP_02045279.1| hypothetical protein ACTODO_02170 [Actinomyces odontolyticus ATCC
           17982]
 gi|153799271|gb|EDN81691.1| hypothetical protein ACTODO_02170 [Actinomyces odontolyticus ATCC
           17982]
          Length = 563

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 83/171 (48%), Gaps = 22/171 (12%)

Query: 22  LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP +L+E  GQ         L+  IEA +  +     ++F GPPG+GKTTLA+V+AR  
Sbjct: 24  MRPTSLDEVVGQSHQIGPGKALRSMIEADRTPS-----MIFWGPPGVGKTTLARVIARHT 78

Query: 79  GVNF----RSTSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             +F      TSG   I +    A    ++  R ++F+DEIHR +   ++   P +E   
Sbjct: 79  HASFIDFSAVTSGIKEIREVMKQADAQASMGRRTIVFVDEIHRFNKAQQDAFLPFVEKGS 138

Query: 134 LDLMVGEGPSARSVKIN---LSR---FTLIAATTR--VGLLTNPLQDRFGI 176
           + +++G      S +IN   LSR   F L   T    V L+   L+D  G 
Sbjct: 139 I-ILIGATTENPSFEINNALLSRCKVFVLHGLTEEDLVDLMRRALKDPRGF 188


>gi|126461163|ref|YP_001042277.1| recombination factor protein RarA [Rhodobacter sphaeroides ATCC
           17029]
 gi|221638141|ref|YP_002524403.1| recombination factor protein RarA [Rhodobacter sphaeroides KD131]
 gi|126102827|gb|ABN75505.1| Recombination protein MgsA [Rhodobacter sphaeroides ATCC 17029]
 gi|221158922|gb|ACL99901.1| Recombination protein MgsA [Rhodobacter sphaeroides KD131]
          Length = 437

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 73/144 (50%), Gaps = 11/144 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP++L E  GQ +  S        A   + +L  ++  GPPG+GKTT+A+++A+E  + 
Sbjct: 24  LRPKSLAEVIGQGKVLSPDGPL--GAMLASGSLSSLILWGPPGVGKTTIARLLAKETDLA 81

Query: 82  FRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           F   S      P + K  + A L        +LF+DEIHR +   ++   P MED  + L
Sbjct: 82  FVQISAIFTGVPDLRKVFEAAKLRRANGQGTLLFVDEIHRFNKAQQDGFLPHMEDGTI-L 140

Query: 137 MVGEGPSARSVKIN---LSRFTLI 157
           +VG      S ++N   +SR  +I
Sbjct: 141 LVGATTENPSFELNAALMSRAQVI 164


>gi|332560168|ref|ZP_08414490.1| recombination factor protein RarA [Rhodobacter sphaeroides WS8N]
 gi|332277880|gb|EGJ23195.1| recombination factor protein RarA [Rhodobacter sphaeroides WS8N]
          Length = 437

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 73/144 (50%), Gaps = 11/144 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP++L E  GQ +  S        A   + +L  ++  GPPG+GKTT+A+++A+E  + 
Sbjct: 24  LRPKSLAEVIGQGKVLSPDGPL--GAMLASGSLSSLILWGPPGVGKTTIARLLAKETDLA 81

Query: 82  FRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           F   S      P + K  + A L        +LF+DEIHR +   ++   P MED  + L
Sbjct: 82  FVQISAIFTGVPDLRKVFEAAKLRRANGQGTLLFVDEIHRFNKAQQDGFLPHMEDGTI-L 140

Query: 137 MVGEGPSARSVKIN---LSRFTLI 157
           +VG      S ++N   +SR  +I
Sbjct: 141 LVGATTENPSFELNAALMSRAQVI 164


>gi|167384792|ref|XP_001737100.1| werner helicase interacting protein [Entamoeba dispar SAW760]
 gi|165900271|gb|EDR26634.1| werner helicase interacting protein, putative [Entamoeba dispar
           SAW760]
          Length = 428

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 113/253 (44%), Gaps = 33/253 (13%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+ +EE  GQ++   ++   I         +D ++F GPPG GKTTL +++      +F
Sbjct: 34  RPQKIEEVVGQLKTRDDIIHQITVLGK----IDSMIFFGPPGCGKTTLCKLIKGYFEKSF 89

Query: 83  RSTSGPVIAK--AGDLAALLTNLED----RDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
               G  I      DL +++   ++    + ++FIDEIH +S IV+E+L   +++  + L
Sbjct: 90  IELDGSSINTKMTKDLKSIIKKNKETTHSQTIIFIDEIHCISPIVQELLIDLLKEKTIHL 149

Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR-- 194
           +   G + +     LS+  L+                F   I L       LK I++R  
Sbjct: 150 I---GTTTQVPSFCLSKELLL----------------FVRVIMLERLSETSLKEIIKRAI 190

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR-- 252
            A+ +   V+DE   +I   S G  R+A   L R+   AE+     I+ +     + +  
Sbjct: 191 NAEYSKYIVSDEIINKIIDSSDGDGRMALNNLERLIQCAELEKVNEISIKFVHEIIGKKS 250

Query: 253 LAIDKMGFDQLDL 265
           L  DK G +  +L
Sbjct: 251 LNYDKRGDEHYNL 263


>gi|161621803|ref|YP_016214.2| recombination factor protein RarA [Mycoplasma mobile 163K]
          Length = 406

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 19/168 (11%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  LE+  GQ       K  IE      + +   +F G  G+GKTT A V+A+E   +
Sbjct: 8   IRPERLEDIVGQSHLIELFKAIIEK-----QEMSSFIFYGESGIGKTTAATVIAKEKQES 62

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           +     P I    +L   L  L    +L IDE+HRL+   +EIL   +ED ++ L     
Sbjct: 63  Y-DVFNPTIHSKKEL---LEKLAINKILIIDELHRLNKDKQEILLSYLEDDKIILYATTT 118

Query: 142 --------PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
                   PS RS ++ + RF  ++ T     L N ++ ++ + I++N
Sbjct: 119 ENPYFKIIPSLRS-RLKILRFNKLSETEIFQGLKNIIE-KYKLKIKIN 164


>gi|315656685|ref|ZP_07909572.1| replication-associated recombination protein A [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
 gi|315492640|gb|EFU82244.1| replication-associated recombination protein A [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
          Length = 445

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 8/117 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR +EE  GQ    +         +   E    V+  GPPG GKTTLA +VA+  G +
Sbjct: 27  MRPRNVEELVGQSHLLAPNSPLQRLLRGDTEMTSSVILYGPPGTGKTTLAYLVAQAGGRD 86

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131
           +   S  + A   ++  ++   + R        +LF+DE+HR S   ++ L PA+E+
Sbjct: 87  YAQLSA-INAGVKEVREVINAAKQRLSLSGQETILFLDEVHRFSKSQQDSLLPAVEN 142


>gi|304389438|ref|ZP_07371401.1| replication-associated recombination protein A [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
 gi|304327248|gb|EFL94483.1| replication-associated recombination protein A [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
          Length = 445

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 8/117 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR +EE  GQ    +         +   E    V+  GPPG GKTTLA +VA+  G +
Sbjct: 27  MRPRNVEELVGQSHLLAPNSPLQRLLRGDTEMTSSVILYGPPGTGKTTLAYLVAQAGGRD 86

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131
           +   S  + A   ++  ++   + R        +LF+DE+HR S   ++ L PA+E+
Sbjct: 87  YAQLSA-INAGVKEVREVINAAKQRLSLSGQETILFLDEVHRFSKSQQDSLLPAVEN 142


>gi|229071908|ref|ZP_04205119.1| hypothetical protein bcere0025_40750 [Bacillus cereus F65185]
 gi|228711204|gb|EEL63168.1| hypothetical protein bcere0025_40750 [Bacillus cereus F65185]
          Length = 476

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 89/350 (25%), Positives = 138/350 (39%), Gaps = 65/350 (18%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           ++R+ +L   V  +      +RP  ++E  GQ       K+     +A       ++  G
Sbjct: 37  IERDYILRETVQMKQPLAHRMRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYG 94

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSI 119
           PPG GKT++A  +A   G  FR  +  V     D+  ++    +    VL +DE+HRL  
Sbjct: 95  PPGTGKTSIASAIAGSTGTPFRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDK 153

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPI 178
             ++ L P +E   L                    TLI ATT     +NP       I  
Sbjct: 154 AKQDFLLPHLESGLL--------------------TLIGATT-----SNPFHAINSAIRS 188

Query: 179 RLNFYEI----ED-----LKTIVQRGAKLTG---LAVTDEAACEIAMRSRGTPRIAGRLL 226
           R   +E+    ED     LK  ++   K  G   + VTDEA    A  S G  R A   L
Sbjct: 189 RCQIFELHALTEDDILIGLKRALEDKEKGLGEYAVTVTDEALHHFANASGGDMRSAYNAL 248

Query: 227 RR--VRDFAEVAHAKTITREIADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGI 282
               +  F     A  IT EIA+  L + +   DK G    D+  L+   ++  G  V  
Sbjct: 249 ELAVLSSFTTDDQAAEITLEIAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDVNA 306

Query: 283 ETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
                       A+  L    +I+ G +Q    GR L+ +A++ +G+  P
Sbjct: 307 ------------ALHYLAR--LIEAGDLQSI--GRRLLIMAYEDIGLASP 340


>gi|225627677|ref|ZP_03785714.1| recombination factor protein RarA [Brucella ceti str. Cudo]
 gi|225617682|gb|EEH14727.1| recombination factor protein RarA [Brucella ceti str. Cudo]
 gi|326409226|gb|ADZ66291.1| recombination factor protein RarA [Brucella melitensis M28]
          Length = 457

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 95/209 (45%), Gaps = 30/209 (14%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E TGQ        V      +   +L  ++F GPPG GKTT+A+++A E  + 
Sbjct: 43  LRPKHLSEVTGQEHLTGPEGVLTRMIAS--GSLGSMVFWGPPGTGKTTVARLLAGETDLA 100

Query: 82  FRSTSGPVIAKAGDL-----AALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F   S  + +   DL     AA    +  R  +LF+DEIHR +   ++   P MED  + 
Sbjct: 101 FEQISA-IFSGVADLKRVFEAARARRMSGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTV- 158

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           +++G      S ++N       A  +R  +LT             + ++ E + T+++R 
Sbjct: 159 ILIGATTENPSFELN------AALLSRARVLT------------FHPHDSESIATLLKRA 200

Query: 196 AKLTG--LAVTDEAACEIAMRSRGTPRIA 222
            +  G  L + DEA   +   + G  R A
Sbjct: 201 EEQEGQALPLDDEARASLIRMADGDGRAA 229


>gi|254828252|ref|ZP_05232939.1| recombination factor protein RarA [Listeria monocytogenes FSL
           N3-165]
 gi|258600640|gb|EEW13965.1| recombination factor protein RarA [Listeria monocytogenes FSL
           N3-165]
          Length = 427

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 4/130 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L+E  GQ       K+     KA+   L  ++  GPPG+GKT++A  +A      
Sbjct: 10  MRPKALDEIVGQTHLVGKDKIINRMVKAKQ--LSSMILYGPPGIGKTSIASAIAGSTKYA 67

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR+ +     K   ++ A    +    +L +DE+HRL    ++ L P +E   + +++G 
Sbjct: 68  FRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQDFLLPLLESGAI-ILIGA 126

Query: 141 GPSARSVKIN 150
             S   + IN
Sbjct: 127 TTSNPYIAIN 136


>gi|311104419|ref|YP_003977272.1| magnesium chelatase subunit ChlI family protein 1 [Achromobacter
           xylosoxidans A8]
 gi|310759108|gb|ADP14557.1| magnesium chelatase, subunit ChlI family protein 1 [Achromobacter
           xylosoxidans A8]
          Length = 446

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 106/246 (43%), Gaps = 33/246 (13%)

Query: 22  LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPRTL +  GQ         L+V  E+ +  +     ++F GPPG+GKTTLA+++A   
Sbjct: 22  LRPRTLSDVVGQSHLLGPDKPLRVAFESGRPHS-----MIFWGPPGVGKTTLARLMADGF 76

Query: 79  GVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED-- 131
              F + S  +     I  A  +A +      R +LF+DE+HR +   ++   P +E   
Sbjct: 77  DAQFIAISAVLGGVKDIRDAVTVAQVAQGQGRRTILFVDEVHRFNKAQQDAFLPYVESGL 136

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F       E PS       LSR  +    +        L DR           ++ L   
Sbjct: 137 FTFIGATTENPSFEVNSALLSRARVYVLQSLTAEELQQLVDR----------AVQALNDG 186

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           ++ G ++    V  +A  ++A  + G  R   RL+  V   AE A A    R+  DAA L
Sbjct: 187 LEEGERIH---VDADAREQLAAWADGDAR---RLISAVEVVAESAQA--AGRDTVDAAWL 238

Query: 252 RLAIDK 257
            +++ +
Sbjct: 239 EISLSQ 244


>gi|228954684|ref|ZP_04116707.1| hypothetical protein bthur0006_40530 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|229081664|ref|ZP_04214159.1| hypothetical protein bcere0023_42940 [Bacillus cereus Rock4-2]
 gi|229180675|ref|ZP_04308015.1| hypothetical protein bcere0005_40190 [Bacillus cereus 172560W]
 gi|228602820|gb|EEK60301.1| hypothetical protein bcere0005_40190 [Bacillus cereus 172560W]
 gi|228701668|gb|EEL54159.1| hypothetical protein bcere0023_42940 [Bacillus cereus Rock4-2]
 gi|228805011|gb|EEM51607.1| hypothetical protein bthur0006_40530 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 476

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 89/350 (25%), Positives = 138/350 (39%), Gaps = 65/350 (18%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           ++R+ +L   V  +      +RP  ++E  GQ       K+     +A       ++  G
Sbjct: 37  IERDYILRETVQMKQPLAHRMRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYG 94

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSI 119
           PPG GKT++A  +A   G  FR  +  V     D+  ++    +    VL +DE+HRL  
Sbjct: 95  PPGTGKTSIASAIAGSTGTPFRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDK 153

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPI 178
             ++ L P +E   L                    TLI ATT     +NP       I  
Sbjct: 154 AKQDFLLPHLESGLL--------------------TLIGATT-----SNPFHAINSAIRS 188

Query: 179 RLNFYEI----ED-----LKTIVQRGAKLTG---LAVTDEAACEIAMRSRGTPRIAGRLL 226
           R   +E+    ED     LK  ++   K  G   + VTDEA    A  S G  R A   L
Sbjct: 189 RCQIFELHALTEDDILIGLKRALEDKEKGLGEYAVTVTDEALHHFANASGGDMRSAYNAL 248

Query: 227 RR--VRDFAEVAHAKTITREIADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGI 282
               +  F     A  IT EIA+  L + +   DK G    D+  L+   ++  G  V  
Sbjct: 249 ELAVLSSFTTDDQAAEITLEIAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDVNA 306

Query: 283 ETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
                       A+  L    +I+ G +Q    GR L+ +A++ +G+  P
Sbjct: 307 ------------ALHYLAR--LIEAGDLQSI--GRRLLIMAYEDIGLASP 340


>gi|157412429|ref|YP_001483295.1| recombination factor protein RarA [Prochlorococcus marinus str. MIT
           9215]
 gi|157387004|gb|ABV49709.1| putative ATPase, AAA family [Prochlorococcus marinus str. MIT 9215]
          Length = 429

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 75/142 (52%), Gaps = 20/142 (14%)

Query: 2   MDREGLLSRNVSQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M  E L + + SQ + +  L   LRP+ LE+F GQ +   N    + +A    + + + +
Sbjct: 1   MHSENLFT-DYSQVENNAPLADKLRPKNLEDFFGQ-QPILNENSLLRSAILN-DKISNFI 57

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTS---GPVIAKAGDLAALLTNLEDR-------DV 108
           F GPPG+GKTTL ++++     N RS       V++   +L   + N ++R        +
Sbjct: 58  FSGPPGVGKTTLIEIIS----CNTRSKLIKLNAVLSSVKELRNEIANAKERLINSKRKTI 113

Query: 109 LFIDEIHRLSIIVEEILYPAME 130
           LFIDE+HR + + ++ L P++E
Sbjct: 114 LFIDEVHRFTAVQQDALLPSIE 135


>gi|229192611|ref|ZP_04319572.1| hypothetical protein bcere0002_42620 [Bacillus cereus ATCC 10876]
 gi|228590918|gb|EEK48776.1| hypothetical protein bcere0002_42620 [Bacillus cereus ATCC 10876]
          Length = 476

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 89/350 (25%), Positives = 138/350 (39%), Gaps = 65/350 (18%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           ++R+ +L   V  +      +RP  ++E  GQ       K+     +A       ++  G
Sbjct: 37  IERDYILRETVQMKQPLAHRMRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYG 94

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSI 119
           PPG GKT++A  +A   G  FR  +  V     D+  ++    +    VL +DE+HRL  
Sbjct: 95  PPGTGKTSIASAIAGSTGTPFRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDK 153

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPI 178
             ++ L P +E   L                    TLI ATT     +NP       I  
Sbjct: 154 AKQDFLLPHLESGLL--------------------TLIGATT-----SNPFHAINSAIRS 188

Query: 179 RLNFYEI----ED-----LKTIVQRGAKLTG---LAVTDEAACEIAMRSRGTPRIAGRLL 226
           R   +E+    ED     LK  ++   K  G   + VTDEA    A  S G  R A   L
Sbjct: 189 RCQIFELHALTEDDILIGLKRALEDKEKGLGEYAVTVTDEALHHFANASGGDMRSAYNAL 248

Query: 227 RR--VRDFAEVAHAKTITREIADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGI 282
               +  F     A  IT EIA+  L + +   DK G    D+  L+   ++  G  V  
Sbjct: 249 ELAVLSSFTTDDQAAEITLEIAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDVNA 306

Query: 283 ETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
                       A+  L    +I+ G +Q    GR L+ +A++ +G+  P
Sbjct: 307 ------------ALHYLAR--LIEAGDLQSI--GRRLLIMAYEDIGLASP 340


>gi|91793101|ref|YP_562752.1| recombination factor protein RarA [Shewanella denitrificans OS217]
 gi|91715103|gb|ABE55029.1| Recombination protein MgsA [Shewanella denitrificans OS217]
          Length = 443

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 68/139 (48%), Gaps = 17/139 (12%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPR L E+ GQ         L+V +EA +A +     +L  GPPG GKTTLA+++A   
Sbjct: 19  MRPRVLSEYIGQSHLLGEGKALRVALEANRAHS-----MLLWGPPGTGKTTLAELIAHYA 73

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAMED 131
             +    S  V +   D+ A +   +        R +LF+DE+HR +   ++   P +ED
Sbjct: 74  NAHVERISA-VSSGVKDIRAAIEQAKAVAQSRGQRTLLFVDEVHRFNKSQQDAFLPYIED 132

Query: 132 FQLDLMVGEGPSARSVKIN 150
             + + VG      S ++N
Sbjct: 133 GTV-IFVGATTENPSFELN 150


>gi|83720479|ref|YP_442107.1| recombination factor protein RarA [Burkholderia thailandensis E264]
 gi|167619051|ref|ZP_02387682.1| recombination factor protein RarA [Burkholderia thailandensis Bt4]
 gi|257138292|ref|ZP_05586554.1| recombination factor protein RarA [Burkholderia thailandensis E264]
 gi|83654304|gb|ABC38367.1| ATPase, AAA family protein [Burkholderia thailandensis E264]
          Length = 436

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 82/326 (25%), Positives = 136/326 (41%), Gaps = 58/326 (17%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL +  GQ         LK+  E+ K  +     ++  GPPG+GKTTLA++ A   
Sbjct: 17  LRPKTLADVIGQTHLLGEGKPLKLAFESGKPHS-----MILWGPPGVGKTTLARLTALAF 71

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V+    D+   +    D         +LF+DEIHR +   ++ L P +E 
Sbjct: 72  DCEFIALSA-VLGGVKDIREAMEQARDTLNRTGRHTILFVDEIHRFNKAQQDALLPFVES 130

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
             L   +G      S ++N    + + +  +V +L +  +D              +L+ +
Sbjct: 131 -GLVTFIGATTENPSFEVN----SALLSRAQVYVLKSLTED--------------ELRQL 171

Query: 192 VQRG--AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
           ++R     L GLA  D+A   +   + G  R    LL + +  A  A   TI     DAA
Sbjct: 172 LKRAQDTALDGLAFDDKAVDTLVGYADGDARRFLNLLEQAQTAASSAGVTTI-----DAA 226

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNF-GGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            +  A             +TM AR F  GG    + ISA     R +  D    ++ +  
Sbjct: 227 FVESA-------------MTMNARRFDKGGDNFYDQISALHKSVRGSSPDGALYWLCRML 273

Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIP 332
                P+   R ++ +AW+ +G+  P
Sbjct: 274 DGGADPKYLARRVVRMAWEDIGLADP 299


>gi|256847992|ref|ZP_05553436.1| ATPase [Lactobacillus coleohominis 101-4-CHN]
 gi|256715052|gb|EEU30029.1| ATPase [Lactobacillus coleohominis 101-4-CHN]
          Length = 427

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 64/131 (48%), Gaps = 6/131 (4%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRT+EE  GQ       K+     +A+   L  ++  GPPG GKT++A  +A      
Sbjct: 10  MRPRTIEEVVGQQHLVGPGKIIWRMVQAKM--LSSMILYGPPGTGKTSIASAIAGSTKYA 67

Query: 82  FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
           FR+ +     K  DL  ++    +    +L +DEIHRL    ++ L P +E  ++ +++G
Sbjct: 68  FRTLNAATDTKK-DLQIVVEEAKMSGTVILLLDEIHRLDKAKQDFLLPHLESGKI-ILIG 125

Query: 140 EGPSARSVKIN 150
                  + IN
Sbjct: 126 ATTENPYININ 136


>gi|153009313|ref|YP_001370528.1| recombination factor protein RarA [Ochrobactrum anthropi ATCC
           49188]
 gi|151561201|gb|ABS14699.1| AAA ATPase central domain protein [Ochrobactrum anthropi ATCC
           49188]
          Length = 438

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 65/135 (48%), Gaps = 10/135 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E TGQ        V      +   +L  ++F GPPG GKTT+A+++A E  + 
Sbjct: 23  LRPKHLSEVTGQEHLTGPEGVLTRMIAS--GSLGSMIFWGPPGTGKTTVARLLAGETDLA 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F   S  + +   DL  +      R       +LF+DEIHR +   ++   P MED  + 
Sbjct: 81  FEQISA-IFSGVADLKKVFETARARRMSGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTV- 138

Query: 136 LMVGEGPSARSVKIN 150
           +++G      S ++N
Sbjct: 139 ILIGATTENPSFELN 153


>gi|121595667|ref|YP_987563.1| recombination factor protein RarA [Acidovorax sp. JS42]
 gi|120607747|gb|ABM43487.1| Recombination protein MgsA [Acidovorax sp. JS42]
          Length = 442

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 83/325 (25%), Positives = 134/325 (41%), Gaps = 56/325 (17%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPR+L E  GQ         L++  E+ +  +      +  GPPG+GKTT+A+++A   
Sbjct: 16  LRPRSLAEVIGQQHVLGPGMPLRLAFESGRPHS-----CILWGPPGVGKTTIARLMAEAF 70

Query: 79  GVNFRSTSGPVIAKAGDL--AALLTN------LEDRDVLFIDEIHRLSIIVEEILYPAME 130
              F S S  V+    D+  A  L        ++ R ++F+DE+HR +   ++   P +E
Sbjct: 71  DAQFISISA-VLGGVKDIRDAVQLAESARDGLMQQRTIVFVDEVHRFNKSQQDAFLPHVE 129

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
              L   VG      S ++N +  +  A       +  PL               +DLK 
Sbjct: 130 S-GLFTFVGATTENPSFEVNSALLSRAAV-----YVLQPLGS-------------DDLKQ 170

Query: 191 IVQRGAKLTGLAVTDEAACE-IAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
           IV +   L  L   + AA E +   + G  R   RLL  +      A    I R I DA 
Sbjct: 171 IVAKAQALQALPAIENAALERLIAYADGDAR---RLLNTLETLEVTASQAGIER-IEDAW 226

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           LL++  ++M              R   GG    +TISA     R +  D    ++++   
Sbjct: 227 LLQVLGERM-------------RRYDKGGEQFYDTISALHKSVRGSDPDAALYWLVRMLD 273

Query: 310 IQRTPR--GRLLMPIAWQHLGIDIP 332
               PR   R ++ +AW+ +G+  P
Sbjct: 274 GGADPRYMARRIVRMAWEDIGLADP 298


>gi|194333665|ref|YP_002015525.1| recombination factor protein RarA [Prosthecochloris aestuarii DSM
           271]
 gi|194311483|gb|ACF45878.1| AAA ATPase central domain protein [Prosthecochloris aestuarii DSM
           271]
          Length = 454

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/119 (35%), Positives = 61/119 (51%), Gaps = 16/119 (13%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP+TL++  GQ   V   + L+ F+E  +     L  ++F GPPG GKTTLA++ A  L
Sbjct: 32  VRPQTLDQIAGQRHLVAEGAPLRRFLEEGR-----LPSLIFWGPPGSGKTTLAEICAHWL 86

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAME 130
              F   S  V A   D+   L   +        R +LFIDEIHR +   ++ L  A+E
Sbjct: 87  DFRFAKLSA-VDAGVKDVRQALEQADKARRIEGQRSLLFIDEIHRFNKAQQDSLLHAIE 144


>gi|189220465|ref|YP_001941105.1| ATPase [Methylacidiphilum infernorum V4]
 gi|189187323|gb|ACD84508.1| ATPase [Methylacidiphilum infernorum V4]
          Length = 454

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/119 (35%), Positives = 66/119 (55%), Gaps = 16/119 (13%)

Query: 22  LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTLEE  GQ +       L+  I+A + ++     ++  GPPG GKTTLA+++A++ 
Sbjct: 26  MRPRTLEELVGQEDILLPGKPLRRLIDADRIQS-----LILYGPPGTGKTTLAEIIAKKT 80

Query: 79  GVNFRSTSGPVIAKAGDL------AALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAME 130
             +F +    V A   D+      AAL    E +  +LFIDEIHR +   +++L P +E
Sbjct: 81  K-SFFARLNAVEAGVSDIRKVIGQAALRWKKEKKHTLLFIDEIHRFNKSQQDVLLPDLE 138


>gi|152976813|ref|YP_001376330.1| recombination factor protein RarA [Bacillus cereus subsp. cytotoxis
           NVH 391-98]
 gi|152025565|gb|ABS23335.1| AAA ATPase central domain protein [Bacillus cytotoxicus NVH 391-98]
          Length = 428

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 73/263 (27%), Positives = 104/263 (39%), Gaps = 47/263 (17%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  + E  GQ       K+     +A       ++  GPPG GKT++A  +A   G  
Sbjct: 9   MRPTNISEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAIAGSTGTP 66

Query: 82  FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
           FR  +  V     D+  ++    +    VL +DE+HRL    ++ L P +E   L     
Sbjct: 67  FRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLL----- 120

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEI-----EDLKTIVQ 193
                          TLI ATT     +NP       I  R   +E+     +D+ T ++
Sbjct: 121 ---------------TLIGATT-----SNPFHAINSAIRSRCQIFELHALTEDDILTGLK 160

Query: 194 R--GAKLTGLA-----VTDEAACEIAMRSRGTPRIAGRLLRR--VRDFAEVAHAKTITRE 244
           R    K  GL      VTDEA    A  S G  R A   L    +  FA    A  IT E
Sbjct: 161 RALADKEKGLGEYHVTVTDEAIRHFASASGGDMRSAYNALELAVLSSFATDEQAGEITLE 220

Query: 245 IADAALLRLAI--DKMGFDQLDL 265
           IA+  L + +   DK G    D+
Sbjct: 221 IAEECLQKKSFVHDKDGDAHYDV 243


>gi|227514495|ref|ZP_03944544.1| crossover junction endodeoxyribonuclease [Lactobacillus fermentum
           ATCC 14931]
 gi|227087181|gb|EEI22493.1| crossover junction endodeoxyribonuclease [Lactobacillus fermentum
           ATCC 14931]
          Length = 430

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 4/130 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRTL+E  GQ       K+     +AR   L  ++  GPPG GKT++A  +A      
Sbjct: 9   MRPRTLDEVVGQQHLIGPGKIIWRMVEARM--LSSMILYGPPGTGKTSIASAIAGSTKYA 66

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR+ +    +K    + A    +    +L +DEIHRL    ++ L P +E  ++ +++G 
Sbjct: 67  FRTLNAATDSKKDLQVVAEEAKMSGTVILLLDEIHRLDKAKQDFLLPHLESGRI-VLIGA 125

Query: 141 GPSARSVKIN 150
                 + IN
Sbjct: 126 TTENPYIAIN 135


>gi|184154931|ref|YP_001843271.1| recombination factor protein RarA [Lactobacillus fermentum IFO
           3956]
 gi|183226275|dbj|BAG26791.1| ATPase [Lactobacillus fermentum IFO 3956]
 gi|299782966|gb|ADJ40964.1| ATPase [Lactobacillus fermentum CECT 5716]
          Length = 430

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 4/130 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRTL+E  GQ       K+     +AR   L  ++  GPPG GKT++A  +A      
Sbjct: 9   MRPRTLDEVVGQQHLIGPGKIIWRMVEARM--LSSMILYGPPGTGKTSIASAIAGSTKYA 66

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR+ +    +K    + A    +    +L +DEIHRL    ++ L P +E  ++ +++G 
Sbjct: 67  FRTLNAATDSKKDLQVVAEEAKMSGTVILLLDEIHRLDKAKQDFLLPHLESGRI-VLIGA 125

Query: 141 GPSARSVKIN 150
                 + IN
Sbjct: 126 TTENPYIAIN 135


>gi|51893539|ref|YP_076230.1| recombination factor protein RarA [Symbiobacterium thermophilum IAM
           14863]
 gi|51857228|dbj|BAD41386.1| ATP/GTP-binding domain protein [Symbiobacterium thermophilum IAM
           14863]
          Length = 438

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 72/251 (28%), Positives = 107/251 (42%), Gaps = 40/251 (15%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+TL+EF GQ       +    A +A    L   +  GPPG GKTTLA+++A  +  +
Sbjct: 22  MRPQTLDEFVGQEHLVGPGRFLRRALEA--GHLPSCILFGPPGTGKTTLARLMASNVNAH 79

Query: 82  FRS----TSG-PVIAKAGDLA-ALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F      TSG   I +  D A A L     + V+FIDEIHR     ++ L P +ED    
Sbjct: 80  FEQLNAVTSGVQDIRRIVDEARARLAERGQKTVVFIDEIHRWRKDQQDALLPHVED---- 135

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLT--NPLQDRFGIPIRLNFYEIEDLKTIVQ 193
                              TL+ ATT+  L++   PL  R  I   L     E +  ++ 
Sbjct: 136 ----------------GLITLVGATTQNPLVSVNAPLVSRTRI-FELKPLSDEHIAHLLD 178

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA---------HAKTITRE 244
           R  +  G  + +  A           R+AG   R   +  E+A           +T+T E
Sbjct: 179 RALRTPGRGLGNYNATVTPEAMEHLVRMAGGDARAALNALELAVLLTQPDEQGRRTVTLE 238

Query: 245 IADAALLRLAI 255
            A+ ALL+ A+
Sbjct: 239 TAEEALLKRAV 249


>gi|66823793|ref|XP_645251.1| hypothetical protein DDB_G0272158 [Dictyostelium discoideum AX4]
 gi|75009093|sp|Q75JU2|WRIP1_DICDI RecName: Full=ATPase WRNIP1; AltName: Full=Werner
           helicase-interacting protein 1 homolog
 gi|60473285|gb|EAL71231.1| hypothetical protein DDB_G0272158 [Dictyostelium discoideum AX4]
          Length = 876

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 58/116 (50%), Gaps = 11/116 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKA--RAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +RP  L +F GQ     +L V     K   ++  L   +  GPPG GKTTLAQ+VA +  
Sbjct: 201 MRPTELSDFIGQ----ESLLVGDPIVKKLFQSPELPSFILYGPPGCGKTTLAQIVASKSN 256

Query: 80  VNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
            N  + S        I +  D A        + +LFIDEIHR + + +++L PA+E
Sbjct: 257 YNINALSAVGSGVKDIKEVIDKARNTLQFGKKTILFIDEIHRYNKLQQDVLLPAIE 312


>gi|254829727|ref|ZP_05234382.1| recombination factor protein RarA [Listeria monocytogenes 10403S]
          Length = 427

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 4/130 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L+E  GQ       K+     KA+   L  ++  GPPG+GKT++A  +A      
Sbjct: 10  MRPKALDEIVGQTHLVGKDKIINRMVKAKQ--LSSMILYGPPGIGKTSIASAIAGSTKYA 67

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR+ +     K   ++ A    +    +L +DE+HRL    ++ L P +E   + +++G 
Sbjct: 68  FRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQDFLLPLLESGAI-ILIGA 126

Query: 141 GPSARSVKIN 150
             S   + IN
Sbjct: 127 TTSNPYIAIN 136


>gi|34483337|emb|CAE10335.1| conserved hypothetical protein [Wolinella succinogenes]
          Length = 365

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 4/84 (4%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED---RDVL 109
           +L H  F GPPG GKT+ A+++A+ L   F   +     K  +L + L   ++   + +L
Sbjct: 6   SLPHAFFYGPPGTGKTSAAKIIAKRLDRPFALFNATTF-KIEELRSYLKEYKNALLKPLL 64

Query: 110 FIDEIHRLSIIVEEILYPAMEDFQ 133
           FIDE+HRLS   +E+L P ME+ +
Sbjct: 65  FIDEVHRLSKNQQEVLLPLMENHE 88


>gi|260663310|ref|ZP_05864201.1| ATPase [Lactobacillus fermentum 28-3-CHN]
 gi|260552162|gb|EEX25214.1| ATPase [Lactobacillus fermentum 28-3-CHN]
          Length = 430

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 4/130 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRTL+E  GQ       K+     +AR   L  ++  GPPG GKT++A  +A      
Sbjct: 9   MRPRTLDEVVGQQHLIGPGKIIWRMVEARM--LSSMILYGPPGTGKTSIASAIAGSTKYA 66

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR+ +    +K    + A    +    +L +DEIHRL    ++ L P +E  ++ +++G 
Sbjct: 67  FRTLNAATDSKKDLQVVAEEAKMSGTVILLLDEIHRLDKAKQDFLLPHLESGRI-VLIGA 125

Query: 141 GPSARSVKIN 150
                 + IN
Sbjct: 126 TTENPYIAIN 135


>gi|225568918|ref|ZP_03777943.1| hypothetical protein CLOHYLEM_04997 [Clostridium hylemonae DSM
           15053]
 gi|225162417|gb|EEG75036.1| hypothetical protein CLOHYLEM_04997 [Clostridium hylemonae DSM
           15053]
          Length = 445

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 80/158 (50%), Gaps = 22/158 (13%)

Query: 20  SLLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           S LRP +L++F GQ         L+  I+      + +  ++F GPPG+GKTTLA+++AR
Sbjct: 19  SRLRPESLDDFAGQEHLLGPGRLLRQLIDK-----DQISSMIFWGPPGVGKTTLARIIAR 73

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130
               +F   S  V +   ++  +++  E       R ++F+DEIHR +   ++   P +E
Sbjct: 74  RTKADFIDFSA-VTSGIKEIKEVMSKAEKDRHAGIRTLVFVDEIHRFNKAQQDAFLPYVE 132

Query: 131 DFQLDLMVGEGPSARSVKIN---LSR---FTLIAATTR 162
              + +++G      S +IN   LSR   F L A T +
Sbjct: 133 KGSI-ILIGATTENPSFEINAALLSRCKVFVLQALTEK 169


>gi|194468283|ref|ZP_03074269.1| AAA ATPase central domain protein [Lactobacillus reuteri 100-23]
 gi|194453136|gb|EDX42034.1| AAA ATPase central domain protein [Lactobacillus reuteri 100-23]
          Length = 434

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 62/130 (47%), Gaps = 4/130 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRTL+E  GQ       K+     KA+   L  ++  GPPG GKT++A  +A      
Sbjct: 9   MRPRTLDEVVGQQHLVGPGKIISRMVKAKM--LSSMILYGPPGTGKTSIASAIAGSTKYA 66

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR  +     K    + A    +    +L +DEIHRL    ++ L P +E+ ++ +++G 
Sbjct: 67  FRKLNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKGKQDFLLPHLENGRI-ILIGA 125

Query: 141 GPSARSVKIN 150
                 + IN
Sbjct: 126 TTENPYISIN 135


>gi|325271660|ref|ZP_08138160.1| recombination factor protein RarA [Pseudomonas sp. TJI-51]
 gi|324103212|gb|EGC00559.1| recombination factor protein RarA [Pseudomonas sp. TJI-51]
          Length = 279

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/126 (35%), Positives = 62/126 (49%), Gaps = 10/126 (7%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           LLRP+ L+EF GQ       K    A +A  + L   +  GPPG+GKTTL ++ A     
Sbjct: 4   LLRPKALDEFVGQRHLLGPGKPLRLAFEA--DNLHSFILWGPPGVGKTTLGRLAASATDS 61

Query: 81  NFRSTSGPVIAKAGDL-------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
            F + S  V+A   D+        A L N     VLF+DEIHR +   ++ L P +E   
Sbjct: 62  RFIAISA-VLAGVKDIRQAIDEAQAELDNHGRSTVLFVDEIHRFNKAQQDALLPHVESGL 120

Query: 134 LDLMVG 139
           L L+ G
Sbjct: 121 LTLVGG 126


>gi|311280198|ref|YP_003942429.1| AAA ATPase central domain-containing protein [Enterobacter cloacae
           SCF1]
 gi|308749393|gb|ADO49145.1| AAA ATPase central domain protein [Enterobacter cloacae SCF1]
          Length = 447

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 64/129 (49%), Gaps = 9/129 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP TL ++ GQ    +  K    A +A    L  ++  GPPG GKTTLA+V+AR    +
Sbjct: 20  MRPETLAQYIGQQHLLAPGKPLPRAIEA--GHLHSMILWGPPGTGKTTLAEVIARYASAD 77

Query: 82  FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
                  TSG   I +A + A    N   R +LF+DE+HR +   ++   P +ED  +  
Sbjct: 78  VERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 137

Query: 137 M--VGEGPS 143
           +    E PS
Sbjct: 138 IGATTENPS 146


>gi|77360654|ref|YP_340229.1| recombination factor protein RarA [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76875565|emb|CAI86786.1| putative polynucleotide enzyme with nucleotide triphosphate
           hydrolase domain [Pseudoalteromonas haloplanktis TAC125]
          Length = 447

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/133 (34%), Positives = 67/133 (50%), Gaps = 16/133 (12%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKA-RAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           +RP TL+E+ GQ    S  K   +A  A R  +L   +  GPPG+GKTTLAQ++A     
Sbjct: 19  MRPTTLDEYIGQQHLLSADKPLHQAIVAGRCHSL---ILWGPPGVGKTTLAQIIANHADA 75

Query: 81  NFRSTSGPVIAKAGDLAALLT----NLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
                S  V A   D+   +T    NL+    R ++F+DE+HR +   ++   P +ED  
Sbjct: 76  ALIQMSA-VTAGVKDIRDSVTQARENLQSRGQRTLMFVDEVHRFNKSQQDAFLPHIEDGT 134

Query: 134 LDLMVG---EGPS 143
             + VG   E PS
Sbjct: 135 F-IFVGATTENPS 146


>gi|257439846|ref|ZP_05615601.1| replication-associated recombination protein A [Faecalibacterium
           prausnitzii A2-165]
 gi|257197755|gb|EEU96039.1| replication-associated recombination protein A [Faecalibacterium
           prausnitzii A2-165]
          Length = 424

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 83/177 (46%), Gaps = 24/177 (13%)

Query: 22  LRPRTLEEFTGQVEACSNLKVF---IEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP+TL E  GQ    +  +VF   IE+ +     + +++F GP G GKTT+A+++A   
Sbjct: 9   MRPKTLAEVCGQQHLLAPGRVFRRTIESGR-----IPNMIFYGPSGTGKTTVARIIAENS 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRD-----VLFIDEIHRLSIIVEEILYPAMEDFQ 133
           G+     +G      GD+ A+L ++         +L++DEI  L+   ++ L   +ED  
Sbjct: 64  GMTLHKLNGTSCG-TGDIKAVLKDIGTLAGAGGILLYLDEIQYLNKKQQQSLLECIEDGT 122

Query: 134 LDLMVG--EGPSARSVKINLSRFT------LIAATTRVGLLT--NPLQDRFGIPIRL 180
           + L+    E P        LSR T      L AA    GL      L +  G PIR+
Sbjct: 123 VTLIASTTENPYFYIYNALLSRCTVFEFKSLTAADVEQGLRNALKKLSESEGTPIRM 179


>gi|238883747|gb|EEQ47385.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 552

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 104/236 (44%), Gaps = 38/236 (16%)

Query: 22  LRPRTLEEFTGQVEACS----NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +RP T E++ GQ    +     ++ FI+        L  ++F GP G+GKTTLA V++ E
Sbjct: 30  IRPTTFEQYVGQDHLINPIDGAIRNFIKLG-----YLPSMIFTGPSGIGKTTLASVISYE 84

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNL--------------EDRDVLFIDEIHRLSIIVEE 123
            G+ F   S   +    DL   +                 E + VLFIDE+HRL+ I ++
Sbjct: 85  CGLPFLELSATTMTTM-DLKTTIMQKNQKNQKNQKNQNVGEQKIVLFIDELHRLTKIQQD 143

Query: 124 ILYPAMEDFQLDLMVGEG---PSARSVKINLSR---FTLIAATTR--VGLLTNPLQDRFG 175
            L P +E+ ++ +++G     P+ R  +  LSR   F L   T +    +L   +   F 
Sbjct: 144 WLLPYLENGEI-VLIGATTIQPNTRIRQAILSRCQVFKLEKLTRKEIKKVLCQAI--TFQ 200

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
              R + Y+   L  IV            DE    I  R++G  RIA  L+  + D
Sbjct: 201 NLKRKHLYQ---LGAIVYDDDDEEQGDGVDECFDLILDRAQGDCRIAINLIELISD 253


>gi|146307409|ref|YP_001187874.1| recombination factor protein RarA [Pseudomonas mendocina ymp]
 gi|145575610|gb|ABP85142.1| Recombination protein MgsA [Pseudomonas mendocina ymp]
          Length = 440

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 71/135 (52%), Gaps = 9/135 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LR  +L+E+ GQ    +  K   EA +    AL  ++F GPPG+GKTTLA+++A+    +
Sbjct: 17  LRATSLDEYVGQEHVLAPGKPLREALEQ--GALHSMIFWGPPGVGKTTLARLLAKVTDAH 74

Query: 82  FRSTSGPV-----IAKAGDLAAL-LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F + S  +     I +A ++A         R +LF+DE+HR +   ++   P +ED  L 
Sbjct: 75  FETISAVLSGVKEIRQAVEVAQQHAAQYGRRTILFVDEVHRFNKSQQDAFLPYVEDGTL- 133

Query: 136 LMVGEGPSARSVKIN 150
           + +G      S ++N
Sbjct: 134 IFIGATTENPSFELN 148


>gi|159902628|ref|YP_001549972.1| recombination factor protein RarA [Prochlorococcus marinus str. MIT
           9211]
 gi|159887804|gb|ABX08018.1| putative ATPase, AAA family [Prochlorococcus marinus str. MIT 9211]
          Length = 455

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 64/117 (54%), Gaps = 10/117 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP TL++F GQ       ++   A +   + + ++LF GPPG+GKTTL++++A     +
Sbjct: 24  LRPTTLDDFVGQQAILGPGRLLRRAIEC--DRVGNILFQGPPGIGKTTLSKIIASNTRAH 81

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131
           F S    V++   +L   +   ++       R +LFIDE+HR +   ++ L P +E+
Sbjct: 82  F-SELNAVLSGIKELRQEIDAAKNRLGQHGLRTILFIDEVHRFTTSQQDALLPWVEN 137


>gi|240136936|ref|YP_002961405.1| recombination protein [Methylobacterium extorquens AM1]
 gi|240006902|gb|ACS38128.1| recombination protein [Methylobacterium extorquens AM1]
          Length = 447

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 61/130 (46%), Gaps = 11/130 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPR L E  GQ               +R+  L  ++F GPPG GKTT+A+++A E  ++
Sbjct: 32  LRPRRLAEVVGQEHLTGPDGALTRLLASRS--LGSLVFWGPPGTGKTTVARLLAHETALH 89

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F   S  + +   DL  +      R       +LF+DEIHR +    +   P MED  + 
Sbjct: 90  FEQISA-IFSGIADLRKVFEAARKRRATGQGTLLFVDEIHRFNRAQLDAFLPVMEDGTVT 148

Query: 136 LM--VGEGPS 143
           L+    E PS
Sbjct: 149 LVGATTENPS 158


>gi|68483119|ref|XP_714494.1| hypothetical protein CaO19.11084 [Candida albicans SC5314]
 gi|68483220|ref|XP_714445.1| hypothetical protein CaO19.3601 [Candida albicans SC5314]
 gi|46436011|gb|EAK95381.1| hypothetical protein CaO19.3601 [Candida albicans SC5314]
 gi|46436067|gb|EAK95436.1| hypothetical protein CaO19.11084 [Candida albicans SC5314]
          Length = 547

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 104/236 (44%), Gaps = 38/236 (16%)

Query: 22  LRPRTLEEFTGQVEACS----NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +RP T E++ GQ    +     ++ FI+        L  ++F GP G+GKTTLA V++ E
Sbjct: 30  IRPTTFEQYVGQDHLINPIDGAIRNFIKLG-----YLPSMIFTGPSGIGKTTLASVISYE 84

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNL--------------EDRDVLFIDEIHRLSIIVEE 123
            G+ F   S   +    DL   +                 E + VLFIDE+HRL+ I ++
Sbjct: 85  CGLPFLELSATTMTTM-DLKTTIMQKNQKNQKNQKNQNVGEQKIVLFIDELHRLTKIQQD 143

Query: 124 ILYPAMEDFQLDLMVGEG---PSARSVKINLSR---FTLIAATTR--VGLLTNPLQDRFG 175
            L P +E+ ++ +++G     P+ R  +  LSR   F L   T +    +L   +   F 
Sbjct: 144 WLLPYLENGEI-VLIGATTIQPNTRIRQAILSRCQVFKLEKLTRKEIKKVLCQAI--TFQ 200

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
              R + Y+   L  IV            DE    I  R++G  RIA  L+  + D
Sbjct: 201 NLKRKHLYQ---LGAIVYDDDDEEQGDGVDECFDLILDRAQGDCRIAINLIELISD 253


>gi|330503298|ref|YP_004380167.1| recombination factor protein RarA [Pseudomonas mendocina NK-01]
 gi|328917584|gb|AEB58415.1| recombination factor protein RarA [Pseudomonas mendocina NK-01]
          Length = 441

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 71/135 (52%), Gaps = 9/135 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LR  +L+E+ GQ    +  K   EA +    AL  ++F GPPG+GKTTLA+++A+    +
Sbjct: 17  LRATSLDEYVGQEHVLAPGKPLREALEQ--GALHSMIFWGPPGVGKTTLARLLAKVTDAH 74

Query: 82  FRSTSGPV-----IAKAGDLAAL-LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F + S  +     I +A ++A         R +LF+DE+HR +   ++   P +ED  L 
Sbjct: 75  FETISAVLSGVKEIRQAVEVAQQHAAQYGRRTILFVDEVHRFNKSQQDAFLPYVEDGTL- 133

Query: 136 LMVGEGPSARSVKIN 150
           + +G      S ++N
Sbjct: 134 IFIGATTENPSFELN 148


>gi|328876848|gb|EGG25211.1| putative helicase [Dictyostelium fasciculatum]
          Length = 795

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 75/151 (49%), Gaps = 15/151 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP T++EF GQ E    +   + +   ++  +   +  GPPG GKTTLA+++A+    +
Sbjct: 265 MRPTTMKEFIGQHEL---MDQSLISTLFKSGDMPSCIIWGPPGCGKTTLARLIAKNSSSH 321

Query: 82  FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
               S  V +   D+   +   ++      + +LFIDEIHR S + ++ L P +E+  + 
Sbjct: 322 IIMMSA-VGSGVADIKKHVQEAQNSLAFGKKTILFIDEIHRFSKLQQDALLPPVENGIVT 380

Query: 136 LM--VGEGPSARSVKINLSR---FTLIAATT 161
           L+    E PS       LSR   FTL   TT
Sbjct: 381 LIGATTENPSFEVNNALLSRCRVFTLTKLTT 411


>gi|332882226|ref|ZP_08449856.1| ATPase, AAA family [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332679849|gb|EGJ52816.1| ATPase, AAA family [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 425

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 68/143 (47%), Gaps = 15/143 (10%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP TLE++ GQ E     +  +    AR   L  ++F GPPG GKTTLA ++A +    
Sbjct: 8   MRPTTLEDYVGQ-EHLVGTQGALSQQIARG-FLPSLIFWGPPGTGKTTLANIIAHQSNRA 65

Query: 82  FRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           F + S           VI ++     L T      ++FIDEIHR +   ++ L  A+E  
Sbjct: 66  FYTLSAISSGIKEVREVIEQSKQSGGLFTT--QNPIVFIDEIHRFNKTQQDSLLQAVEKG 123

Query: 133 QLDLM--VGEGPSARSVKINLSR 153
            + L+    E PS   +   LSR
Sbjct: 124 WITLIGATTENPSFEVIPALLSR 146


>gi|325290070|ref|YP_004266251.1| Recombination protein MgsA [Syntrophobotulus glycolicus DSM 8271]
 gi|324965471|gb|ADY56250.1| Recombination protein MgsA [Syntrophobotulus glycolicus DSM 8271]
          Length = 434

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 63/116 (54%), Gaps = 10/116 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+   +F GQ E     K+   A +A  + +  ++  GPPG GKT++AQ++A     +
Sbjct: 20  MRPQGFADFIGQEEILGPGKLLRRAIEA--DRIGSIILFGPPGSGKTSIAQIIANHTSSD 77

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAME 130
           F   +  V A A +L A++   E+       + ++F DE+HR +   ++IL PA+E
Sbjct: 78  FVRINA-VSAGAKELRAIIDQAEEKLKLYGQKTLVFCDEVHRFNKGQQDILLPAVE 132


>gi|319761904|ref|YP_004125841.1| aaa atpase central domain protein [Alicycliphilus denitrificans BC]
 gi|317116465|gb|ADU98953.1| AAA ATPase central domain protein [Alicycliphilus denitrificans BC]
          Length = 437

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 86/327 (26%), Positives = 135/327 (41%), Gaps = 60/327 (18%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPRTL E  GQ         L++  E+ +  +      +  GPPG+GKTT+A+++A   
Sbjct: 15  LRPRTLGEVVGQQHVLGPGMPLRLAFESGRPHS-----CILWGPPGVGKTTIARLMAEAF 69

Query: 79  GVNFRSTSGPVIAKAGDL--------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
              F S S  V+    D+        +A    +  R ++F+DE+HR +   ++   P +E
Sbjct: 70  DAQFISISA-VLGGVKDIRDAVQLAESAAGGLMPQRTIVFVDEVHRFNKSQQDAFLPHVE 128

Query: 131 D--FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
              F       E PS       LSR    AA   +  LT+                 +DL
Sbjct: 129 SGLFTFVGATTENPSFEVNSALLSR----AAVYVLQPLTS-----------------DDL 167

Query: 189 KTIVQRGAKLTGL-AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           K IV R   +  L A+ +EA   +   + G  R     L  +   AE A  +TIT    D
Sbjct: 168 KRIVVRAQDIQALPAIENEALERLIAYADGDARRLLNTLETLSVTAEQAKVETIT----D 223

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           A LL++  ++M              R   GG    +TISA     R +  D    ++++ 
Sbjct: 224 AWLLQVLGERM-------------RRYDKGGEQFYDTISALHKSVRGSDPDAALYWLVRM 270

Query: 308 GFIQRTPR--GRLLMPIAWQHLGIDIP 332
                 PR   R ++ +AW+ +G+  P
Sbjct: 271 LDGGADPRYMARRIVRMAWEDIGLADP 297


>gi|298291465|ref|YP_003693404.1| ATPase AAA [Starkeya novella DSM 506]
 gi|296927976|gb|ADH88785.1| AAA ATPase central domain protein [Starkeya novella DSM 506]
          Length = 437

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 62/130 (47%), Gaps = 11/130 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E  GQ        +      +R+  L  ++F GPPG GKTT+A+++A E  ++
Sbjct: 22  LRPQRLAEVVGQEHLTGPDGILTRMIDSRS--LGSLIFWGPPGTGKTTVARLLAHETDLH 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F   S  +     +L  +      R       +LF+DEIHR +   ++   P MED  + 
Sbjct: 80  FEQVSA-IFTGVAELKKVFEAARGRRAVGRGTLLFVDEIHRFNKAQQDSFLPVMEDGTVT 138

Query: 136 LM--VGEGPS 143
           L+    E PS
Sbjct: 139 LIGATTENPS 148


>gi|27380478|ref|NP_772007.1| recombination factor protein RarA [Bradyrhizobium japonicum USDA
           110]
 gi|27353642|dbj|BAC50632.1| bll5367 [Bradyrhizobium japonicum USDA 110]
          Length = 445

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 63/134 (47%), Gaps = 8/134 (5%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPR L E  GQ              + R   L  ++F GPPG GKTT+A+++A    ++
Sbjct: 30  LRPRALSEVVGQDHILGPDGALTRMLETRT--LGSLVFWGPPGTGKTTVARLLADATDLH 87

Query: 82  FRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           F   S        + KA D A     +    +LF+DE+HR +   ++   P MED  + +
Sbjct: 88  FEQISAVFSGVADLKKAFDAARARREMGKGTLLFVDEVHRFNRAQQDSFLPVMEDGTV-V 146

Query: 137 MVGEGPSARSVKIN 150
           MVG      S ++N
Sbjct: 147 MVGATTENPSFELN 160


>gi|54308357|ref|YP_129377.1| recombination factor protein RarA [Photobacterium profundum SS9]
 gi|46912785|emb|CAG19575.1| putative ATPase protein [Photobacterium profundum SS9]
          Length = 446

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 73/269 (27%), Positives = 110/269 (40%), Gaps = 46/269 (17%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRT+EE+ GQ       K    A +A    L  ++  GPPG GKTTLA+V A      
Sbjct: 19  MRPRTVEEYIGQQHILGVGKPLRRALEAGH--LHSMILWGPPGTGKTTLAEVAANYANAE 76

Query: 82  FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
               S  V +   D+   +    +      R +LF+DE+HR +   ++   P +ED    
Sbjct: 77  VERVSA-VTSGVKDIRIAIDKARENKMAGRRTILFVDEVHRFNKSQQDAFLPHIED---- 131

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGL--LTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
                              T I ATT      L N L  R  +  +L   E  ++  +V+
Sbjct: 132 ----------------GTVTFIGATTENPSFELNNALLSRARV-YKLKSLETAEVLAVVE 174

Query: 194 -------RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA--KTITRE 244
                  RG   T L   D+    ++    G  R++   L ++ D AE   A  K IT E
Sbjct: 175 QALKDSSRGISDTNLEFVDDVKERLSELVCGDARMSLNYLEQLVDMAEENKAGIKYITLE 234

Query: 245 IADAALLRLAIDKMG-FDQLDLRYLTMIA 272
           +    L  +A +K+G FD     +  MI+
Sbjct: 235 L----LAEVAGEKIGRFDNKGDLWYDMIS 259


>gi|326794638|ref|YP_004312458.1| ATPase AAA [Marinomonas mediterranea MMB-1]
 gi|326545402|gb|ADZ90622.1| AAA ATPase central domain protein [Marinomonas mediterranea MMB-1]
          Length = 446

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 21/161 (13%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP +L ++ GQ   V     L+  IE+    +      +  GPPG+GKTT AQ+ A+ +
Sbjct: 21  MRPMSLSDYFGQEHLVGEGKPLRKMIESQHGHS-----FILWGPPGVGKTTFAQLFAKSM 75

Query: 79  GVNFRSTSGPVIAKAGDLAALL-------TNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
              F   S  V++   D+ A +       T      +LF+DE+HR +   ++   P +ED
Sbjct: 76  SAQFIELSA-VMSGVKDIRAAVEKAKQWRTVHNSSTLLFVDEVHRFNKSQQDAFLPFIED 134

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
               L VG      + ++N    + + +  RV  LTNP  D
Sbjct: 135 GTF-LFVGATTENPAFELN----SALLSRARVYRLTNPSVD 170


>gi|229591234|ref|YP_002873353.1| recombination factor protein RarA [Pseudomonas fluorescens SBW25]
 gi|229363100|emb|CAY50103.1| conserevd hypothetical protein [Pseudomonas fluorescens SBW25]
          Length = 440

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 70/135 (51%), Gaps = 9/135 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LR   L+E+ GQ    +  K   EA +    AL  ++F GPPG+GKTTLA+++A+    +
Sbjct: 17  LRSTNLDEYVGQEHLLARGKPLREALEQ--GALHSMIFWGPPGVGKTTLARLLAKVSDAH 74

Query: 82  FRSTSGPV-----IAKAGDLAALLT-NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F + S  +     I +A ++A         R +LF+DE+HR +   ++   P +ED  L 
Sbjct: 75  FETVSAVLAGVKEIRQAVEVAKQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVEDGTL- 133

Query: 136 LMVGEGPSARSVKIN 150
           + +G      S ++N
Sbjct: 134 IFIGATTENPSFELN 148


>gi|329910976|ref|ZP_08275423.1| AAA ATPase, central region [Oxalobacteraceae bacterium IMCC9480]
 gi|327546035|gb|EGF31112.1| AAA ATPase, central region [Oxalobacteraceae bacterium IMCC9480]
          Length = 431

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 108/249 (43%), Gaps = 56/249 (22%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP TL++  GQ   +     L+V  E+ +  +     ++  GPPG+GKTTLA+++A   
Sbjct: 10  LRPTTLDQVIGQQHLLGPGKPLRVAFESGEPHS-----MILWGPPGVGKTTLARLMADSF 64

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAMED 131
             +F + S  V++   D+   +   +        R +LF+DE+HR +   ++   P +E 
Sbjct: 65  AADFIALSA-VLSGVKDIREAVERAQLSRGAMGRRTILFVDEVHRFNKSQQDAFLPHVES 123

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP-------LQDRFGIPIRLNFYE 184
                                 FT I ATT      NP       L  R  + +  +  E
Sbjct: 124 --------------------GLFTFIGATTE-----NPSFEVNGALLSRAAVYVLKSLTE 158

Query: 185 IEDLKTIVQRGAK--LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            +DL  ++ R  +  L GL   D+A   +   + G  R   +LL  +   A  A AK++ 
Sbjct: 159 -DDLGQLLDRACRDLLDGLQFADDAKTTLVASADGDGR---KLLNNLEIVARAAAAKSVV 214

Query: 243 REIADAALL 251
             + DAALL
Sbjct: 215 --LVDAALL 221


>gi|323436175|ref|ZP_01051125.2| ATPase family associated with various cellular activities (AAA)
           [Dokdonia donghaensis MED134]
 gi|321496490|gb|EAQ37959.2| ATPase family associated with various cellular activities (AAA)
           [Dokdonia donghaensis MED134]
          Length = 426

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 67/143 (46%), Gaps = 15/143 (10%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ LE++  Q           +A KA    +  ++  GPPG+GKTTLA ++A E    
Sbjct: 10  LRPKKLEDYLSQHHLVGENGSLQQALKAGI--IPSLILWGPPGIGKTTLATIIAEESKRP 67

Query: 82  FRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           F + S           VI KA     L T  +   +LFIDEIHR S   ++ L  A+E  
Sbjct: 68  FYTLSAINSGVKDIREVIDKAKQSGGLFT--QKNPILFIDEIHRFSKSQQDSLLGAVERG 125

Query: 133 QLDLM--VGEGPSARSVKINLSR 153
            + L+    E PS   +   LSR
Sbjct: 126 WVTLVGATTENPSFEVIPALLSR 148


>gi|254283872|ref|ZP_04958840.1| ATPase, AAA family [gamma proteobacterium NOR51-B]
 gi|219680075|gb|EED36424.1| ATPase, AAA family [gamma proteobacterium NOR51-B]
          Length = 445

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 94/208 (45%), Gaps = 30/208 (14%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP  L ++ GQV      K   EA + R +    +L+ GPPG GKTTLA++ A +    F
Sbjct: 25  RPSALADYVGQVHVLGPGKPLREAIE-RGDLHSFILW-GPPGTGKTTLARLSAHQANAEF 82

Query: 83  RSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
              S  V+A   D+  ++             VLF+DE+HR +   ++   P +ED  L +
Sbjct: 83  VQISA-VMAGVKDIRDVVARASQERGMGRATVLFVDEVHRFNKAQQDAFLPYVEDGTL-I 140

Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR-- 194
            +G      S ++N    + + +  RV  L  PL D             ++L  IV+   
Sbjct: 141 FIGATTENPSFEVN----SALLSRARVYKL-QPLSD-------------DELSRIVRAAL 182

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIA 222
            A+ T + V+D+A  ++   + G  R A
Sbjct: 183 AAEFTDVTVSDDALSQLVASADGDARRA 210


>gi|21673587|ref|NP_661652.1| recombination factor protein RarA [Chlorobium tepidum TLS]
 gi|21646700|gb|AAM71994.1| ATPase, AAA family [Chlorobium tepidum TLS]
          Length = 451

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 81/163 (49%), Gaps = 26/163 (15%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPR+++E  GQ   V     ++ ++E  +     +  ++F GPPG GKTTLA++ AR L
Sbjct: 33  VRPRSIDELFGQEHLVGPGGPVRSYLEQGR-----IPSMIFWGPPGSGKTTLAEICARSL 87

Query: 79  GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDV-LFIDEIHRLSIIVEEILYPAMEDF 132
              F   S        + +  +LA    +++ R + LFIDEIHR +   ++ L  A+E  
Sbjct: 88  NYRFEQLSATDAGVKDVRRVLELAQKSRSIDGRQMLLFIDEIHRFNKAQQDTLLHAIEQ- 146

Query: 133 QLDLMVG---EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
            L +++G   E PS    +  LSR  +         + NPL +
Sbjct: 147 GLIVLIGATTENPSFEVNRALLSRMQV--------YILNPLSE 181


>gi|84515662|ref|ZP_01003023.1| ATPase, AAA family [Loktanella vestfoldensis SKA53]
 gi|84510104|gb|EAQ06560.1| ATPase, AAA family [Loktanella vestfoldensis SKA53]
          Length = 436

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 68/137 (49%), Gaps = 14/137 (10%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+ L E  GQ +       L   + +      +L  ++F GPPG+GKTT+A+++A E 
Sbjct: 23  LRPKRLAEVIGQQQVLGTDAPLGTMLASG-----SLSSLVFWGPPGVGKTTIARLLADET 77

Query: 79  GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
            ++F   S      P + K  + A +        +LF+DEIHR +   ++   P MED  
Sbjct: 78  DLHFVQISAIFTGVPELRKVFEAAKMRRQNGKGTLLFVDEIHRFNKAQQDGFLPYMEDGT 137

Query: 134 LDLMVGEGPSARSVKIN 150
           + L+VG      S ++N
Sbjct: 138 I-LLVGATTENPSFELN 153


>gi|312961667|ref|ZP_07776165.1| ATPase, AAA family [Pseudomonas fluorescens WH6]
 gi|311283926|gb|EFQ62509.1| ATPase, AAA family [Pseudomonas fluorescens WH6]
          Length = 441

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 70/135 (51%), Gaps = 9/135 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LR   L+E+ GQ    +  K   EA +    AL  ++F GPPG+GKTTLA+++A+    +
Sbjct: 17  LRSTNLDEYVGQEHLLARGKPLREALEQ--GALHSMIFWGPPGVGKTTLARLLAKVSDAH 74

Query: 82  FRSTSGPV-----IAKAGDLAALLT-NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F + S  +     I +A ++A         R +LF+DE+HR +   ++   P +ED  L 
Sbjct: 75  FETVSAVLAGVKEIRQAVEVAKQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVEDGTL- 133

Query: 136 LMVGEGPSARSVKIN 150
           + +G      S ++N
Sbjct: 134 IFIGATTENPSFELN 148


>gi|264677024|ref|YP_003276930.1| transporter ATM1 precursor [Comamonas testosteroni CNB-2]
 gi|262207536|gb|ACY31634.1| transporter ATM1 precursor [Comamonas testosteroni CNB-2]
          Length = 446

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 83/327 (25%), Positives = 133/327 (40%), Gaps = 60/327 (18%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP TL E  GQ         L++  E+ +  +      +  GPPG+GKTT+A+++A   
Sbjct: 21  LRPHTLAEVIGQQHVLGEGMPLRLAFESGRPHS-----CILWGPPGVGKTTIARLMADAF 75

Query: 79  GVNFRSTSGPVIAKAGDL--------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
              F S S  V+    D+        AA    L+ R ++F+DE+HR +   ++   P +E
Sbjct: 76  DAQFISISA-VLGGVKDIREAVEQAQAAQSGLLQQRTIVFVDEVHRFNKGQQDAFLPHVE 134

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL--LTNPLQDRFGIPIRLNFYEIEDL 188
                                  FT I ATT      + + L  R  + + L     +DL
Sbjct: 135 S--------------------GLFTFIGATTENPSFEVNSALLSRAAVYV-LQSLTPDDL 173

Query: 189 KTIVQRGAKLTGL-AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           K IV +   +  + A+ DEA   +   + G  R     L  +   AE A  ++IT    D
Sbjct: 174 KQIVAKAQAIQAIPAIEDEALERLIAYADGDARRLLNTLETLSITAEQAGVQSIT----D 229

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           A LL++  ++M              R   GG    +TISA     R +  D    +  + 
Sbjct: 230 AWLLKVLGERM-------------RRYDKGGEQFYDTISALHKSVRGSDPDAALYWFCRM 276

Query: 308 GFIQRTPR--GRLLMPIAWQHLGIDIP 332
                 PR   R ++ +AW+ +G+  P
Sbjct: 277 LDGGADPRYLARRIVRMAWEDIGLADP 303


>gi|218528368|ref|YP_002419184.1| recombination factor protein RarA [Methylobacterium
           chloromethanicum CM4]
 gi|218520671|gb|ACK81256.1| AAA ATPase central domain protein [Methylobacterium
           chloromethanicum CM4]
          Length = 440

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 61/130 (46%), Gaps = 11/130 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPR L E  GQ               +R+  L  ++F GPPG GKTT+A+++A E  ++
Sbjct: 25  LRPRRLAEVVGQEHLTGPDGALTRLLASRS--LGSLVFWGPPGTGKTTVARLLAHETALH 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F   S  + +   DL  +      R       +LF+DEIHR +    +   P MED  + 
Sbjct: 83  FEQISA-IFSGIADLRKVFEAARKRRATGQGTLLFVDEIHRFNRAQLDAFLPVMEDGTVT 141

Query: 136 LM--VGEGPS 143
           L+    E PS
Sbjct: 142 LVGATTENPS 151


>gi|163849727|ref|YP_001637770.1| recombination factor protein RarA [Methylobacterium extorquens PA1]
 gi|163661332|gb|ABY28699.1| AAA ATPase central domain protein [Methylobacterium extorquens PA1]
          Length = 437

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 61/130 (46%), Gaps = 11/130 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPR L E  GQ               +R+  L  ++F GPPG GKTT+A+++A E  ++
Sbjct: 22  LRPRRLAEVVGQEHLTGPDGALTRLLASRS--LGSLVFWGPPGTGKTTVARLLAHETALH 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F   S  + +   DL  +      R       +LF+DEIHR +    +   P MED  + 
Sbjct: 80  FEQISA-IFSGIADLRKVFEAARKRRATGQGTLLFVDEIHRFNRAQLDAFLPVMEDGTVT 138

Query: 136 LM--VGEGPS 143
           L+    E PS
Sbjct: 139 LVGATTENPS 148


>gi|327393324|dbj|BAK10746.1| ATPase AAA family YcaJ [Pantoea ananatis AJ13355]
          Length = 455

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 72/150 (48%), Gaps = 17/150 (11%)

Query: 6   GLLSRNVSQEDAD--ISLLRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFV 60
           G LS + S ED     + +RP TL+ + GQ   + A   L   IEA       L  ++  
Sbjct: 10  GNLSLDFSSEDFKPLAARMRPETLKHYIGQQHLLAAGKPLPRAIEAGH-----LHSMILW 64

Query: 61  GPPGLGKTTLAQVVARELGVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIH 115
           GPPG GKTTLA+++A     +       TSG   I +A + A L      R +LF+DE+H
Sbjct: 65  GPPGTGKTTLAEIIAHYGNADVERISAVTSGVKEIREAIERARLSKQAGRRTILFVDEVH 124

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPS 143
           R +   ++   P +ED  +  +    E PS
Sbjct: 125 RFNKSQQDAFLPHIEDGTITFIGATTENPS 154


>gi|315126411|ref|YP_004068414.1| recombination factor protein RarA [Pseudoalteromonas sp. SM9913]
 gi|315014925|gb|ADT68263.1| recombination factor protein RarA [Pseudoalteromonas sp. SM9913]
          Length = 447

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 96/232 (41%), Gaps = 37/232 (15%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKA-RAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           +RP +L ++ GQ    S  K   +A  A R  +L   +  GPPG+GKTTLAQ++A     
Sbjct: 19  MRPLSLNDYIGQQHLLSADKPLHQAIVAGRCHSL---ILWGPPGVGKTTLAQIIANHADA 75

Query: 81  NFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
                S  V A   D+   +T   D       R ++F+DE+HR +   ++   P +ED  
Sbjct: 76  ELIQMSA-VTAGVKDIRDSVTQARDNLQSRGQRTLMFVDEVHRFNKSQQDAFLPHIEDGT 134

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
             + VG      S  +N      I +  RV +L + LQ+              DL T+++
Sbjct: 135 F-IFVGATTENPSFALN----NAILSRARVYVLKS-LQE-------------SDLYTVIE 175

Query: 194 RGAK------LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           R  K         + + D A   +   S G  R    LL +  D     + K
Sbjct: 176 RALKQDEQLSQKQIVIADNAKQALCQASGGDARKVLNLLEQAVDLTTEQNGK 227


>gi|297562029|ref|YP_003681003.1| ATPase AAA [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
 gi|296846477|gb|ADH68497.1| AAA ATPase central domain protein [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 456

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/120 (35%), Positives = 62/120 (51%), Gaps = 16/120 (13%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL+E  GQ   +   S L+  +E      +A   V   GPPG GKTTLA VV+R  
Sbjct: 33  MRPRTLDEVVGQRHLLGEGSPLRRLVED-----DAPMSVFLWGPPGTGKTTLATVVSRVT 87

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAMED 131
              F   S  V A   D+ A++ +          R +LF+DE+HR +   ++ L PA+E+
Sbjct: 88  KRRFVELSA-VNAGVKDVRAVIDDARRRMGMHGTRTLLFVDEVHRFNKTQQDALLPAVEN 146


>gi|304311214|ref|YP_003810812.1| Uncharacterized ATPase related to the helicase subunit of the
           Holliday junction resolvase [gamma proteobacterium HdN1]
 gi|301796947|emb|CBL45160.1| Uncharacterized ATPase related to the helicase subunit of the
           Holliday junction resolvase [gamma proteobacterium HdN1]
          Length = 467

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 77/260 (29%), Positives = 115/260 (44%), Gaps = 41/260 (15%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP TLEE+ GQ   + A  +L+  +E  +A +     ++  GPPG+GKTTLA ++A  +
Sbjct: 19  MRPLTLEEYAGQEHLLGANGSLRKALELGQAHS-----MILWGPPGVGKTTLAMLMANYI 73

Query: 79  GVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
              F + S  +     I  A D A        + +LF+DE+HR +   ++   P +ED  
Sbjct: 74  EAQFITLSAVLSGVKEIRAAIDEARHYRQQGRQCLLFVDEVHRFNKSQQDAFLPHIEDGT 133

Query: 134 LDLMVGEGPSARSVKIN---LSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           + + VG      S ++N   LSR        RV +L  PL D   I  R        L++
Sbjct: 134 V-IFVGATTENPSFELNGALLSR-------ARVYVL-KPL-DASAITAR--------LRS 175

Query: 191 IVQRGAKLTGLAVTDEAAC--EIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
            +Q    L G  +  E A    IA  + G  R A  LL      AE   A  +T  I   
Sbjct: 176 AMQDARGLAGAGIRAEDAILETIARAADGDMRRAYNLLEIATSLAEADGADQVTEAILSQ 235

Query: 249 ALLRLA--IDKMG---FDQL 263
           A+       DK G   +DQ+
Sbjct: 236 AVGEGGRRFDKHGDQFYDQI 255


>gi|238924018|ref|YP_002937534.1| Holliday junction DNA helicase B [Eubacterium rectale ATCC 33656]
 gi|238875693|gb|ACR75400.1| Holliday junction DNA helicase B [Eubacterium rectale ATCC 33656]
          Length = 79

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/67 (44%), Positives = 43/67 (64%), Gaps = 1/67 (1%)

Query: 7  LLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
          ++S  + +ED  I   LRP   +++ GQ +   NLK++IEAAK+R EALDHVLF GP  L
Sbjct: 4  VISTQLQEEDIKIEKSLRPMYFDDYIGQQKIKDNLKIYIEAAKSRGEALDHVLFYGPRDL 63

Query: 66 GKTTLAQ 72
           +  L +
Sbjct: 64 ERQHLQE 70


>gi|183982180|ref|YP_001850471.1| hypothetical protein MMAR_2167 [Mycobacterium marinum M]
 gi|183175506|gb|ACC40616.1| conserved alanine, valine and leucine rich protein [Mycobacterium
           marinum M]
          Length = 452

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 91/187 (48%), Gaps = 38/187 (20%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP +L+E  GQ   +   + L+  +E +      +  V+  GPPG GKTTLA +++   
Sbjct: 35  MRPESLDEVVGQGHLLAPGAPLRRLVEGS-----GVASVILYGPPGSGKTTLAALISHAT 89

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           G  F + S  + A   D+ A++          ++ VLFIDE+HR S   ++ L  A+E+ 
Sbjct: 90  GRRFEALSA-LSAGVKDVRAVIETARQVLRRGEQTVLFIDEVHRFSKTQQDALLSAVENR 148

Query: 133 QLDLMVG--EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
            + L+    E PS          F+++A          PL  R  I ++L+    +D++ 
Sbjct: 149 VVLLVAATTENPS----------FSVVA----------PLLSRSLI-LQLHPLGADDIRA 187

Query: 191 IVQRGAK 197
           +VQR A+
Sbjct: 188 VVQRAAQ 194


>gi|153003645|ref|YP_001377970.1| recombination factor protein RarA [Anaeromyxobacter sp. Fw109-5]
 gi|152027218|gb|ABS24986.1| AAA ATPase central domain protein [Anaeromyxobacter sp. Fw109-5]
          Length = 444

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 72/148 (48%), Gaps = 18/148 (12%)

Query: 22  LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPR LE+F GQ       + L+  IEA     + +  ++  GPPG GKTTLA++VA+  
Sbjct: 21  MRPRRLEDFVGQEHVLGRDTGLRRAIEA-----DQVPSLIVWGPPGTGKTTLARIVAKRT 75

Query: 79  GVNFRSTSGPVIAKAGDLAALLT-------NLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
           G  F   S  V+    ++  ++            R +LF+DEIHR +   ++   P +ED
Sbjct: 76  GAEFVPFSA-VLGGVKEIREIVAAARDRRRMHRKRTILFVDEIHRFTKAQQDAFLPHVED 134

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLI 157
             + L+    E PS       LSR  ++
Sbjct: 135 GTITLIGATTENPSFEVNAALLSRCRVV 162


>gi|149202871|ref|ZP_01879842.1| ATPase, AAA family protein [Roseovarius sp. TM1035]
 gi|149143417|gb|EDM31453.1| ATPase, AAA family protein [Roseovarius sp. TM1035]
          Length = 436

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 76/151 (50%), Gaps = 19/151 (12%)

Query: 22  LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPR L +  GQ +     + L V + +      +L  ++F GPPG+GKTT+A+++A E 
Sbjct: 25  LRPRRLVDVIGQEQVLGPEAPLGVMLASG-----SLSSLVFWGPPGVGKTTIARLLADET 79

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDF 132
            ++F   S  +     DL  +    + R       +LF+DEIHR +   ++   P MED 
Sbjct: 80  DLHFVQISA-IFTGVPDLRKVFDEAKHRRTQGRGTLLFVDEIHRFNKAQQDGFLPHMEDG 138

Query: 133 QLDLMVGEGPSARSVKIN---LSRFTLIAAT 160
            + L+VG      S ++N   LSR  ++  T
Sbjct: 139 TI-LLVGATTENPSFELNAALLSRAQVLVLT 168


>gi|327480897|gb|AEA84207.1| recombination factor protein RarA [Pseudomonas stutzeri DSM 4166]
          Length = 441

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 71/135 (52%), Gaps = 9/135 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LR  +L+E+ GQ    +  K   EA +    AL  ++F GPPG+GKTTLA+++A+    +
Sbjct: 17  LRAASLDEYVGQEHLLARGKPLREALEQ--GALHSMVFWGPPGVGKTTLARLLAKVSDAH 74

Query: 82  FRSTSGPV-----IAKAGDLAA-LLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F + S  +     I +A ++A         R +LF+DE+HR +   ++   P +ED  L 
Sbjct: 75  FETVSAVLAGVKEIRQAVEIAKQQAAQYGRRTILFVDEVHRFNKSQQDAFLPYVEDGTL- 133

Query: 136 LMVGEGPSARSVKIN 150
           + +G      S ++N
Sbjct: 134 IFIGATTENPSFELN 148


>gi|77462287|ref|YP_351791.1| recombination factor protein RarA [Rhodobacter sphaeroides 2.4.1]
 gi|77386705|gb|ABA77890.1| Recombination protein MgsA [Rhodobacter sphaeroides 2.4.1]
          Length = 437

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 73/144 (50%), Gaps = 11/144 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP++L E  GQ +  S        A   + +L  ++  GPPG+GKTT+A+++A+E  + 
Sbjct: 24  LRPKSLAEVIGQGKVLSPDGPL--GAMLVSGSLSSLILWGPPGVGKTTIARLLAKETDLA 81

Query: 82  FRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           F   S      P + K  + A L        +LF+DEIHR +   ++   P MED  + L
Sbjct: 82  FVQISAIFTGVPDLRKVFEAAKLRRANGQGTLLFVDEIHRFNKAQQDGFLPHMEDGTI-L 140

Query: 137 MVGEGPSARSVKIN---LSRFTLI 157
           +VG      S ++N   +SR  +I
Sbjct: 141 LVGATTENPSFELNAALMSRAQVI 164


>gi|295092387|emb|CBK78494.1| Recombination protein MgsA [Clostridium cf. saccharolyticum K10]
          Length = 462

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 70/140 (50%), Gaps = 16/140 (11%)

Query: 20  SLLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           S +RP +LEEF GQ         L+  IE      + +  ++F GPPG+GKTTLA ++A 
Sbjct: 18  SRMRPESLEEFFGQSHLLGEGMLLRNLIER-----DQVSSMIFWGPPGVGKTTLASIIAN 72

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130
                F + S  V +   ++  ++   E+      + V+F+DEIHR +   ++   P +E
Sbjct: 73  RTNAGFINFSA-VTSGIKEIREVMAKAEEARHRGMKTVVFVDEIHRFNKAQQDAFLPYVE 131

Query: 131 DFQLDLMVGEGPSARSVKIN 150
              + +++G      S +IN
Sbjct: 132 RGSI-ILIGATTENPSFEIN 150


>gi|167624139|ref|YP_001674433.1| recombination factor protein RarA [Shewanella halifaxensis HAW-EB4]
 gi|167354161|gb|ABZ76774.1| AAA ATPase central domain protein [Shewanella halifaxensis HAW-EB4]
          Length = 443

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 67/259 (25%), Positives = 110/259 (42%), Gaps = 38/259 (14%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKA-RAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           +RP  LE++ GQ       K   +A +A RA ++   +F GPPG GKTTLA++VA     
Sbjct: 19  MRPERLEQYIGQSHLLGEGKPLRQALEAGRAHSM---MFWGPPGTGKTTLAELVAHYANA 75

Query: 81  NFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +    S  V +   ++ + + + ++       R +LF+DE+HR +   ++   P +ED  
Sbjct: 76  HVERISA-VTSGVKEIRSAIEHAKNVAQSRGQRTLLFVDEVHRFNKSQQDAFLPFIEDGT 134

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           + + +G      S +IN      + +  RV L+                 E E++  IVQ
Sbjct: 135 V-IFIGATTENPSFEIN----NALLSRARVYLIKQ--------------LEPEEIGQIVQ 175

Query: 194 -------RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
                  RG     L +  + + ++A    G  R A  L+  + D  +   A T    IA
Sbjct: 176 QALEDEERGLGKRKLLLPADVSLKLAQTCDGDARKALNLIELMSDMLKDGEAFTEEMIIA 235

Query: 247 DAALLRLAIDKMGFDQLDL 265
            A       DK G    DL
Sbjct: 236 VAGQQLAGFDKNGDQYYDL 254


>gi|77459806|ref|YP_349313.1| recombination factor protein RarA [Pseudomonas fluorescens Pf0-1]
 gi|77383809|gb|ABA75322.1| conserevd hypothetical protein [Pseudomonas fluorescens Pf0-1]
          Length = 441

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 69/135 (51%), Gaps = 9/135 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LR   L+E+ GQ    +  K   EA +    AL  ++F GPPG+GKTTLA+++A     +
Sbjct: 18  LRATNLDEYVGQEHVLARGKPLREALEQ--GALHSMIFWGPPGVGKTTLARLLAEVSDAH 75

Query: 82  FRSTSGPV-----IAKAGDLAALLT-NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F + S  +     I +A ++A         R +LF+DE+HR +   ++   P +ED  L 
Sbjct: 76  FETVSAVLAGVKEIRQAVEIAKQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVEDGTL- 134

Query: 136 LMVGEGPSARSVKIN 150
           + +G      S ++N
Sbjct: 135 IFIGATTENPSFELN 149


>gi|87122210|ref|ZP_01078093.1| putative ATPase [Marinomonas sp. MED121]
 gi|86162530|gb|EAQ63812.1| putative ATPase [Marinomonas sp. MED121]
          Length = 448

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 80/172 (46%), Gaps = 23/172 (13%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPR L ++ GQ   V     LK  IE  +  +      +  G PG+GKTT A++++ +L
Sbjct: 19  MRPRQLSDYLGQEHLVGEGKPLKRMIETGRCHS-----FILWGAPGVGKTTFAKLLSHQL 73

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLSIIVEEILYPAMED 131
             +F   S  V++   D+ A +   +          VLF+DE+HR +   ++   P +ED
Sbjct: 74  QAHFLELSA-VMSGVKDIRAAVEQAKQHKMMNAGQTVLFVDEVHRFNKSQQDAFLPFIED 132

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLN 181
               L +G      + ++N    + + +  RV  L  P QD  R G+   LN
Sbjct: 133 GTF-LFIGATTENPAFELN----SALLSRARVYSLKKPSQDIIRTGLERALN 179


>gi|149377437|ref|ZP_01895180.1| putative ATPase associated with chromosome architecture
           [Marinobacter algicola DG893]
 gi|149358278|gb|EDM46757.1| putative ATPase associated with chromosome architecture
           [Marinobacter algicola DG893]
          Length = 447

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 77/154 (50%), Gaps = 15/154 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP +L+E+ GQ       K    A +     L  ++  GPPG+GKTT A+++A    ++
Sbjct: 19  MRPASLDEYVGQSHLVGEGKPLRRAVEQ--GQLHSMILWGPPGVGKTTFARLLANLSDLS 76

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F + S  V++   D+  ++   ++R        +LF+DE+HR +   ++   P +ED   
Sbjct: 77  FETVSA-VLSGVKDIRLIVERAKERKRSEGRDTLLFVDEVHRFNKSQQDAFLPHIEDGTF 135

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
            + VG      S ++N    + + + TRV +L N
Sbjct: 136 -IFVGATTENPSFELN----SALLSRTRVYVLKN 164


>gi|237746808|ref|ZP_04577288.1| recombination factor protein RarA [Oxalobacter formigenes HOxBLS]
 gi|229378159|gb|EEO28250.1| recombination factor protein RarA [Oxalobacter formigenes HOxBLS]
          Length = 430

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 105/232 (45%), Gaps = 42/232 (18%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+T++E  GQ   +     L++  E+ +  +     ++  GPPG+GKTTLA+++A   
Sbjct: 10  LRPQTIDEVVGQEHLLGPGKPLRLAFESGEPHS-----MILWGPPGVGKTTLARLMADGF 64

Query: 79  GVNFRSTSGPV-----IAKAGDLAALL-TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
              F + S  +     I +A + A L+ +    R +LF+DE+HR +   ++   P +E  
Sbjct: 65  NAEFIALSAVLSGVKDIREAVERARLIRSGSGRRTILFVDEVHRFNKSQQDAFLPHVES- 123

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGL--LTNPLQDRFGIPIRLNFYEIEDLKT 190
                                FT I ATT      + N L  R  + + L   +  +L T
Sbjct: 124 -------------------GLFTFIGATTENPSFEVNNALLSRAAVYV-LKPLDNGNLDT 163

Query: 191 IVQRG--AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           +V R    +L GL V+ EA   + M + G  R   RLL  +   A+ A AK 
Sbjct: 164 LVNRALERELDGLTVSAEARTLLLMSADGDAR---RLLNNLEIVAQAARAKN 212


>gi|158424151|ref|YP_001525443.1| recombination factor protein RarA [Azorhizobium caulinodans ORS
           571]
 gi|158331040|dbj|BAF88525.1| AAA ATPase [Azorhizobium caulinodans ORS 571]
          Length = 469

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/142 (32%), Positives = 68/142 (47%), Gaps = 12/142 (8%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           +LRP+ LE+  GQ              K +   L   +  GPPG GKTT+A++VAR LG 
Sbjct: 51  VLRPQRLEDVIGQEHLLGPEGPIGRMVKGKR--LSSFILWGPPGSGKTTIARLVARGLGF 108

Query: 81  NFRSTSGPVIAKAGDLAALL-------TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
            F   S  V++   DL  ++       T    +  +F+DE+HR +   ++ L P +ED  
Sbjct: 109 EFVQLSA-VLSGVADLRKVVETARQLRTGSGRQTAVFVDELHRFNRTTQDALLPHVEDGT 167

Query: 134 LDLM--VGEGPSARSVKINLSR 153
           + L+    E PS   V   LSR
Sbjct: 168 IVLIGATTENPSFSMVAALLSR 189


>gi|260061886|ref|YP_003194966.1| recombination factor protein RarA [Robiginitalea biformata
           HTCC2501]
 gi|88786019|gb|EAR17188.1| putative ATPase, AAA family protein [Robiginitalea biformata
           HTCC2501]
          Length = 427

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/146 (34%), Positives = 67/146 (45%), Gaps = 21/146 (14%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEA---LDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPR L E+  Q        V  + A  R  A   +  ++F GPPG GKTTLA ++A E 
Sbjct: 9   VRPRKLSEYLSQTHL-----VGPQGALTRQIANGTVPSMIFWGPPGTGKTTLAHIIAEES 63

Query: 79  GVNFRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           G  F + S           VI KA     L T      +LFIDEIHR S   ++ L  A+
Sbjct: 64  GRPFFTLSAINSGVKDVREVIEKARQGGGLFTT--RNPILFIDEIHRFSKSQQDSLLAAV 121

Query: 130 EDFQLDLM--VGEGPSARSVKINLSR 153
           E   + L+    E PS   +   LSR
Sbjct: 122 EKGWVTLIGATTENPSFEVIPALLSR 147


>gi|46203510|ref|ZP_00051413.2| COG2256: ATPase related to the helicase subunit of the Holliday
           junction resolvase [Magnetospirillum magnetotacticum
           MS-1]
          Length = 175

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 61/130 (46%), Gaps = 11/130 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPR L E  GQ               +R+  L  ++F GPPG GKTT+A+++A E  ++
Sbjct: 22  LRPRRLSEVVGQEHLTGPDGALTRLLASRS--LGSLVFWGPPGTGKTTVARLLAHETALH 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F   S  + +   DL  +      R       +LF+DEIHR +    +   P MED  + 
Sbjct: 80  FEQISA-IFSGIADLRKVFEAARKRRSTGQGTLLFVDEIHRFNRAQLDAFLPVMEDGTVT 138

Query: 136 LM--VGEGPS 143
           L+    E PS
Sbjct: 139 LVGATTENPS 148


>gi|157363945|ref|YP_001470712.1| recombination factor protein RarA [Thermotoga lettingae TMO]
 gi|157314549|gb|ABV33648.1| AAA ATPase central domain protein [Thermotoga lettingae TMO]
          Length = 436

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 92/208 (44%), Gaps = 24/208 (11%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ +E+  GQ        +  +A + +      VL+ GPPG GK+++A+++ + +   
Sbjct: 14  VRPKNVEDLVGQQHVMGKEGILRKALE-KGMMFSCVLY-GPPGCGKSSIAELIRKHVDAE 71

Query: 82  FRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           F   SG +     I +A + A  +     + ++FIDEIHRL+   +++L   +ED  + L
Sbjct: 72  FFFFSGALHGANDIKQAMNRAQEMKRYGKQTIIFIDEIHRLNKAQQDLLLSKVEDGTITL 131

Query: 137 M--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           +    E PS   +   LSR  +I           PL +           +I     IV  
Sbjct: 132 IGATTENPSFEIIPPLLSRCRVI--------FLKPLSNE-------ELIKIMKRAIIVDE 176

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIA 222
                 + VTDE    IA  S+G  R A
Sbjct: 177 KIASYEINVTDEVFQAIAQMSQGDARFA 204


>gi|254495330|ref|ZP_05108254.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [Polaribacter sp. MED152]
 gi|85819684|gb|EAQ40841.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [Polaribacter sp. MED152]
          Length = 423

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 65/143 (45%), Gaps = 15/143 (10%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+TLE++  Q        V     K     +  ++  GPPG+GKTTLA ++A E    
Sbjct: 9   IRPKTLEDYISQQHLVGPKGVLTNLIKQGI--IPSLILWGPPGIGKTTLANIIATESNRP 66

Query: 82  FRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           F + S           VI KA     L T      +LFIDEIHR S   ++ L  A+E  
Sbjct: 67  FYTLSAISSGVKDVREVIEKAKKSGGLFT--AKNPILFIDEIHRFSKSQQDSLLGAVEKG 124

Query: 133 QLDLM--VGEGPSARSVKINLSR 153
            + L+    E PS   +   LSR
Sbjct: 125 WVTLIGATTENPSFEVIPALLSR 147


>gi|255530100|ref|YP_003090472.1| AAA ATPase central domain-containing protein [Pedobacter heparinus
           DSM 2366]
 gi|255343084|gb|ACU02410.1| AAA ATPase central domain protein [Pedobacter heparinus DSM 2366]
          Length = 426

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/140 (35%), Positives = 72/140 (51%), Gaps = 10/140 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L+E+ GQ        V  +A ++    L  ++F GPPG+GKTTLA ++++ L   
Sbjct: 11  MRPQNLDEYVGQQHLVGPDAVLRKAIQSGQ--LPSMIFWGPPGVGKTTLAYIISQTLDRP 68

Query: 82  FRSTSG-----PVIAKAGDLAALLTN-LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F + S        I    D AALL + L    +LFIDEIHR S   ++ L  A+E   + 
Sbjct: 69  FFNLSAINSGVKDIRDVIDRAALLKDSLMGLPILFIDEIHRFSKSQQDSLLGAVERGLVT 128

Query: 136 LM--VGEGPSARSVKINLSR 153
           L+    E PS   +   LSR
Sbjct: 129 LIGATTENPSFEVISALLSR 148


>gi|256822345|ref|YP_003146308.1| AAA ATPase central domain-containing protein [Kangiella koreensis
           DSM 16069]
 gi|256795884|gb|ACV26540.1| AAA ATPase central domain protein [Kangiella koreensis DSM 16069]
          Length = 451

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 67/133 (50%), Gaps = 17/133 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP +L ++ GQ   + A   L+  IE  +  +     ++F GPPG GKTTLA+++A+  
Sbjct: 21  LRPTSLNDYVGQEHLLAAGKPLRQAIETQRPFS-----LIFWGPPGTGKTTLARLIAQSS 75

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAMEDF 132
             +F + S  V+A   D+ A +             +LF+DE+HR +   ++   P +ED 
Sbjct: 76  NAHFITISA-VLAGVKDIRAAVDEARQYQSQGKPTILFVDEVHRFNKAQQDAFLPYVEDG 134

Query: 133 QLDLM--VGEGPS 143
            L  +    E PS
Sbjct: 135 TLTFIGATTENPS 147


>gi|315645809|ref|ZP_07898930.1| AAA ATPase central domain protein [Paenibacillus vortex V453]
 gi|315278570|gb|EFU41884.1| AAA ATPase central domain protein [Paenibacillus vortex V453]
          Length = 435

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 63/117 (53%), Gaps = 10/117 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP +L+E+ GQ       K+   A +A  + +  +L  GPPG GKTTLA +++++   +
Sbjct: 21  MRPSSLDEYIGQEHIIGPGKLLRRAIEA--DQVSSILLYGPPGCGKTTLAHIISQQTKGH 78

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131
           F   +  V A   D+  ++   +        + +LF+DE+HR +   ++ L PA+E+
Sbjct: 79  FVRLNA-VEASVKDVREVIEQAQSNRSLYGTKTILFLDEVHRFNSSRQDALLPAVEN 134


>gi|296504892|ref|YP_003666592.1| recombination factor protein RarA [Bacillus thuringiensis BMB171]
 gi|296325944|gb|ADH08872.1| recombination factor protein RarA [Bacillus thuringiensis BMB171]
          Length = 428

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 130/330 (39%), Gaps = 65/330 (19%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  ++E  GQ       K+     +A       ++  GPPG GKT++A  +A   G  
Sbjct: 9   MRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAIAGSTGTP 66

Query: 82  FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
           FR  +  V     D+  ++    +    VL +DE+HRL    ++ L P +E   L     
Sbjct: 67  FRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLL----- 120

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEI-----EDLKTIVQ 193
                          TLI ATT     +NP       I  R   +E+     ED+   ++
Sbjct: 121 ---------------TLIGATT-----SNPFHAINSAIRSRCQIFELHALTEEDILIGLK 160

Query: 194 R-------GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR--VRDFAEVAHAKTITRE 244
           R       G     + VTDEA    A  S G  R A   L    +  F     A  IT E
Sbjct: 161 RALEDKEKGLGEYAVTVTDEALHHFANASGGDMRSAYNALELAVLSSFTTDDQAAEITLE 220

Query: 245 IADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           IA+  L + +   DK G    D+  L+ + ++  G  V              A+  L   
Sbjct: 221 IAEECLQKKSFVHDKGGDAHYDV--LSALQKSVRGSDVNA------------ALHYLAR- 265

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
            +I+ G +Q    GR L+ +A++ +G+  P
Sbjct: 266 -LIEAGDLQSI--GRRLLIMAYEDIGLASP 292


>gi|170761682|ref|YP_001787888.1| recombination factor protein RarA [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169408671|gb|ACA57082.1| ATPase, AAA family [Clostridium botulinum A3 str. Loch Maree]
          Length = 416

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 126/295 (42%), Gaps = 29/295 (9%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           L+RP+ LE+F GQ    S  K      K ++  + + +F GPPG GKTTLA ++A  +  
Sbjct: 7   LMRPKKLEDFVGQKHILSENKPLYNLMKNKS--ICNSIFYGPPGTGKTTLANIMANYVDK 64

Query: 81  NFR--STSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
            F   + +   I    ++ + + +L +    VL+IDE+   +   ++ L   +ED ++ L
Sbjct: 65  KFYRLNATTASIKDIQEITSSINSLLNYSGVVLYIDELQHFTKKQQQALLEFIEDGRVIL 124

Query: 137 MVG--EGPSARSVKINLSRFTLIAAT--TRVGLL------TNPLQDRFGIPIRLNFYEIE 186
           +    E P     K  LSR  +       R  ++       N L D+ GI I+ +F  +E
Sbjct: 125 IASTTENPYFVIHKAILSRCNIFQFKPLNREDIILGLEKAINKLIDK-GINIKYSFESLE 183

Query: 187 DLKTIVQ----RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV-----AH 237
            +  I Q    +   +  LAV       I +       +A   +R      E      A 
Sbjct: 184 YIGEICQGDYRKAYNILELAVNSHCGFNIEITLDYIESLAQSNIRADATGDEYYNILSAF 243

Query: 238 AKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFG-GGPVGIETISAGL 289
            K+I    ADAA+  LA  I       +  R   M+A + G   P  +  +++G+
Sbjct: 244 QKSIRGSDADAAVHYLARLIKSGDITSITRRLSVMVAEDIGLAYPNALTIVNSGI 298


>gi|308389351|gb|ADO31671.1| recombination factor protein RarA [Neisseria meningitidis alpha710]
 gi|325130297|gb|EGC53064.1| magnesium chelatase, subunit ChlI family [Neisseria meningitidis
           OX99.30304]
 gi|325136258|gb|EGC58866.1| magnesium chelatase, subunit ChlI family [Neisseria meningitidis
           M0579]
 gi|325202050|gb|ADY97504.1| magnesium chelatase, subunit ChlI family [Neisseria meningitidis
           M01-240149]
 gi|325208196|gb|ADZ03648.1| magnesium chelatase, subunit ChlI family [Neisseria meningitidis
           NZ-05/33]
          Length = 436

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 68/143 (47%), Gaps = 17/143 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP TL++  GQ   +    +L+V +E  K  +     +L  GPPG+GKTTLA+++A+  
Sbjct: 17  LRPHTLDDVVGQEHLIGEGKSLRVAVEGGKPHS-----MLLWGPPGVGKTTLARILAQSF 71

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
              F   S  V +   D+   +   E         +LF+DE+HR +   ++   P +E+ 
Sbjct: 72  NAQFLPVSA-VFSGVKDIRGAIDKAEIALQQGRATILFVDEVHRFNKAQQDAFLPYVENG 130

Query: 133 QLDLM--VGEGPSARSVKINLSR 153
            L  +    E PS       LSR
Sbjct: 131 LLTFIGATTENPSFEVNPALLSR 153


>gi|304408765|ref|ZP_07390386.1| AAA ATPase central domain protein [Shewanella baltica OS183]
 gi|307302768|ref|ZP_07582523.1| AAA ATPase central domain protein [Shewanella baltica BA175]
 gi|304352586|gb|EFM16983.1| AAA ATPase central domain protein [Shewanella baltica OS183]
 gi|306913128|gb|EFN43550.1| AAA ATPase central domain protein [Shewanella baltica BA175]
          Length = 443

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 17/139 (12%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRT+ E+ GQ         L+  +EA +A +     ++  GPPG GKTTLA+++A   
Sbjct: 19  MRPRTIAEYIGQAHLLGEGQPLRKALEAGRAHS-----MMLWGPPGTGKTTLAELIAHYS 73

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAMED 131
             +    S  V +   D+ A +   +        R +LF+DE+HR +   ++   P +ED
Sbjct: 74  NAHVERISA-VTSGVKDIRAAIEQAKAVAESRGQRTLLFVDEVHRFNKSQQDAFLPFIED 132

Query: 132 FQLDLMVGEGPSARSVKIN 150
             + + +G      S +IN
Sbjct: 133 GTV-IFIGATTENPSFEIN 150


>gi|146293105|ref|YP_001183529.1| recombination factor protein RarA [Shewanella putrefaciens CN-32]
 gi|145564795|gb|ABP75730.1| Recombination protein MgsA [Shewanella putrefaciens CN-32]
          Length = 443

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 69/265 (26%), Positives = 121/265 (45%), Gaps = 41/265 (15%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPR++ E+ GQ         L+  +EA +A +     ++  GPPG GKTTLA+++A+  
Sbjct: 19  MRPRSIAEYIGQAHLLGEGQPLRKALEAGRAHS-----MMLWGPPGTGKTTLAELIAQYS 73

Query: 79  GVNFRS----TSG--PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
             +       TSG   + A      A+  +   R +LF+DE+HR +   ++   P +ED 
Sbjct: 74  NAHVERISAVTSGVKEIRAAIEQAKAIAESRGQRTLLFVDEVHRFNKSQQDAFLPFIEDG 133

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI- 191
            + + +G      S +IN      + +  RV L+            RL+  EI  + T  
Sbjct: 134 TV-IFIGATTENPSFEIN----NALLSRARVYLIK-----------RLSNNEIAHIVTQA 177

Query: 192 ---VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
               +RG  L  L + +    ++A    G  R A  LL  + D   V+   T T E+   
Sbjct: 178 LADTERGLGLRQLEMPESVLIKLAQLCDGDARKALNLLELMSDM--VSDNDTFTLEM--- 232

Query: 249 ALLRLAIDKM-GFDQLDLRYLTMIA 272
            L+++A  ++ GFD+   ++  +I+
Sbjct: 233 -LVQVAGHQVAGFDKNGDQFYDLIS 256


>gi|262373850|ref|ZP_06067128.1| conserved hypothetical protein [Acinetobacter junii SH205]
 gi|262311603|gb|EEY92689.1| conserved hypothetical protein [Acinetobacter junii SH205]
          Length = 424

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 62/195 (31%), Positives = 96/195 (49%), Gaps = 36/195 (18%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPR L E  GQ   +   + L+  I+        L  ++F GPPG+GKTT+A ++A+ +
Sbjct: 12  LRPRDLSEIIGQDHLLGENAPLRQMIDQGH-----LPSIIFWGPPGVGKTTIALLLAQAV 66

Query: 79  GVNFRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
              F S S           VIA++GD   LLT      V+FIDEIHR +   ++ L  A+
Sbjct: 67  DRPFISLSALNTGVKELREVIAESGD---LLT-----PVVFIDEIHRFNKSQQDALLNAV 118

Query: 130 EDFQLDLM--VGEGPSARSVKINLSR---FTL--IAATTRVGLLTNPLQ-DRFGIPIRLN 181
           E  ++ L+    E PS       LSR   +TL  + A     L+   +Q D+F   ++  
Sbjct: 119 EKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDADAIQTLINKAIQSDKF---LKER 175

Query: 182 FYEIEDLKTIVQRGA 196
           F ++E+   ++Q  A
Sbjct: 176 FIQVEEYDALIQFAA 190


>gi|217973365|ref|YP_002358116.1| recombination factor protein RarA [Shewanella baltica OS223]
 gi|217498500|gb|ACK46693.1| AAA ATPase central domain protein [Shewanella baltica OS223]
          Length = 443

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 17/139 (12%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRT+ E+ GQ         L+  +EA +A +     ++  GPPG GKTTLA+++A   
Sbjct: 19  MRPRTIAEYIGQAHLLGEGQPLRKALEAGRAHS-----MMLWGPPGTGKTTLAELIAHYS 73

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAMED 131
             +    S  V +   D+ A +   +        R +LF+DE+HR +   ++   P +ED
Sbjct: 74  NAHVERISA-VTSGVKDIRAAIEQAKAVAESRGQRTLLFVDEVHRFNKSQQDAFLPFIED 132

Query: 132 FQLDLMVGEGPSARSVKIN 150
             + + +G      S +IN
Sbjct: 133 GTV-IFIGATTENPSFEIN 150


>gi|114704681|ref|ZP_01437589.1| hypothetical protein FP2506_07091 [Fulvimarina pelagi HTCC2506]
 gi|114539466|gb|EAU42586.1| hypothetical protein FP2506_07091 [Fulvimarina pelagi HTCC2506]
          Length = 464

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 74/160 (46%), Gaps = 17/160 (10%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPR L E  GQ        +       +   L  ++F GPPG GKTT+A+++A++    
Sbjct: 50  LRPRMLSEVVGQEHLTGEGGILSRMLAGKN--LGSMIFWGPPGTGKTTVARLLAKDSDYA 107

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F   S  +     DL  +  +   R       +LF+DEIHR +   ++   P MED  + 
Sbjct: 108 FEQISA-IFTGVADLKKVFESARMRRSNGRPTLLFVDEIHRFNRAQQDSFLPVMEDGTV- 165

Query: 136 LMVGEGPSARSVKIN---LSRFTLIA----ATTRVGLLTN 168
           ++VG      S ++N   LSR  ++      TT + LL N
Sbjct: 166 VLVGATTENPSFELNAALLSRARVLTFKPHDTTSLSLLLN 205


>gi|160875433|ref|YP_001554749.1| recombination factor protein RarA [Shewanella baltica OS195]
 gi|160860955|gb|ABX49489.1| AAA ATPase central domain protein [Shewanella baltica OS195]
 gi|315267623|gb|ADT94476.1| AAA ATPase central domain protein [Shewanella baltica OS678]
          Length = 443

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 17/139 (12%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRT+ E+ GQ         L+  +EA +A +     ++  GPPG GKTTLA+++A   
Sbjct: 19  MRPRTIAEYIGQAHLLGEGQPLRKALEAGRAHS-----MMLWGPPGTGKTTLAELIAHYS 73

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAMED 131
             +    S  V +   D+ A +   +        R +LF+DE+HR +   ++   P +ED
Sbjct: 74  NAHVERISA-VTSGVKDIRAAIEQAKAVAESRGQRTLLFVDEVHRFNKSQQDAFLPFIED 132

Query: 132 FQLDLMVGEGPSARSVKIN 150
             + + +G      S +IN
Sbjct: 133 GTV-IFIGATTENPSFEIN 150


>gi|330810442|ref|YP_004354904.1| Replication-associated recombination protein [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327378550|gb|AEA69900.1| Replication-associated recombination protein [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 442

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 69/135 (51%), Gaps = 9/135 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LR   L+E+ GQ    +  K   EA +    AL  ++F GPPG+GKTTLA+++A     +
Sbjct: 18  LRATNLDEYVGQEHVLARGKPLREALEQ--GALHSMIFWGPPGVGKTTLARLLAEVSDAH 75

Query: 82  FRSTSGPV-----IAKAGDLAALLT-NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F + S  +     I +A ++A         R +LF+DE+HR +   ++   P +ED  L 
Sbjct: 76  FETVSAVLAGVKEIRQAVEVAKQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVEDGTL- 134

Query: 136 LMVGEGPSARSVKIN 150
           + +G      S ++N
Sbjct: 135 IFIGATTENPSFELN 149


>gi|152980972|ref|YP_001352846.1| recombination factor protein RarA [Janthinobacterium sp. Marseille]
 gi|151281049|gb|ABR89459.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 433

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 15/118 (12%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL+E  GQ         L++  ++ K  +     ++F GPPG+GKTTLA++ A   
Sbjct: 17  LRPKTLDEVVGQSHLLGEGKPLRLAFQSGKPHS-----MIFWGPPGVGKTTLARLTASAF 71

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130
              F + S  V +   D+ A +   E         +LF+DEIHR +   ++ L P  E
Sbjct: 72  ECEFIALSA-VFSGVKDIRAAMEQAEQNLAMGKHTILFVDEIHRFNKSQQDALLPYAE 128


>gi|323697890|ref|ZP_08109802.1| AAA ATPase central domain protein [Desulfovibrio sp. ND132]
 gi|323457822|gb|EGB13687.1| AAA ATPase central domain protein [Desulfovibrio desulfuricans
           ND132]
          Length = 407

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 101/225 (44%), Gaps = 32/225 (14%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP +L++F GQ    + ++ F     A+++ +  +L  GPPG GK+TLA ++A+  G  
Sbjct: 15  IRPASLDDFVGQGHIRNRIEAF-----AQSKRMPSLLLFGPPGCGKSTLALLLAQLTGKK 69

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VG 139
           +   S P   +AG L AL   L  +++L +DE+HR S   ++   P +E  ++ L+    
Sbjct: 70  YLRVSAP---EAG-LTALRKMLPGQEILILDELHRFSKAQQDFFLPILESGEITLLATTT 125

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199
           E PS    +  LSR  +                     +RL     E+L  +  RGA+  
Sbjct: 126 ENPSFSVTRQLLSRLHV---------------------LRLRQLSREELVDVSHRGAREL 164

Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            + + +E+   +A  + G  R    LL    +  +        RE
Sbjct: 165 NVELEEESHRMLAAMAGGDARTLLNLLEYTAELPKDKRCPECLRE 209


>gi|169629937|ref|YP_001703586.1| hypothetical protein MAB_2853c [Mycobacterium abscessus ATCC 19977]
 gi|169241904|emb|CAM62932.1| Conserved hypothetical protein [Mycobacterium abscessus]
          Length = 451

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 74/144 (51%), Gaps = 18/144 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP TL+E  GQ   ++  S L+  ++ + A +     V+  GPPG GKTTLA +++   
Sbjct: 32  MRPATLDEVVGQGHLLKQGSPLRRLVDGSGAAS-----VILYGPPGTGKTTLASLISGAT 86

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAMED 131
           G  F + S  + A   ++ A++ N          + VLFIDE+HR S   ++ L  A+E+
Sbjct: 87  GRRFEALSA-LSAGVKEVRAVIENSRTALAYHGQQTVLFIDEVHRFSKTQQDALLAAVEN 145

Query: 132 FQLDLMVG--EGPSARSVKINLSR 153
             + L+    E PS   V   LSR
Sbjct: 146 RVVLLVAATTENPSFSVVAPLLSR 169


>gi|146282639|ref|YP_001172792.1| recombination factor protein RarA [Pseudomonas stutzeri A1501]
 gi|145570844|gb|ABP79950.1| ATPase, AAA family [Pseudomonas stutzeri A1501]
          Length = 441

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 71/135 (52%), Gaps = 9/135 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LR  +L+E+ GQ    +  K   EA +    AL  ++F GPPG+GKTTLA+++A+    +
Sbjct: 17  LRAASLDEYVGQEHLLARGKPLREALEH--GALHSMVFWGPPGVGKTTLARLLAKVSDAH 74

Query: 82  FRSTSGPV-----IAKAGDLAA-LLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F + S  +     I +A ++A         R +LF+DE+HR +   ++   P +ED  L 
Sbjct: 75  FETVSAVLAGVKEIRQAVEIAKQQAAQYGRRTILFVDEVHRFNKSQQDAFLPYVEDGTL- 133

Query: 136 LMVGEGPSARSVKIN 150
           + +G      S ++N
Sbjct: 134 IFIGATTENPSFELN 148


>gi|116493046|ref|YP_804781.1| recombination factor protein RarA [Pediococcus pentosaceus ATCC
           25745]
 gi|116103196|gb|ABJ68339.1| Recombination protein MgsA [Pediococcus pentosaceus ATCC 25745]
          Length = 425

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 4/130 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRT+EE  GQ       K+     KA+   L  ++  GPPG GKT++A  ++      
Sbjct: 8   MRPRTIEEIVGQQHLVGPGKIIDRMVKAKL--LSSMILYGPPGTGKTSIASAISGSTKYA 65

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR  +    +K    + A    +    +L +DEIHRL    ++ L P +E+  + +++G 
Sbjct: 66  FRILNAATDSKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPHLENGNI-ILIGA 124

Query: 141 GPSARSVKIN 150
                 + IN
Sbjct: 125 TTENPYININ 134


>gi|325833397|ref|ZP_08165846.1| ATPase, AAA family [Eggerthella sp. HGA1]
 gi|325485321|gb|EGC87790.1| ATPase, AAA family [Eggerthella sp. HGA1]
          Length = 446

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/123 (36%), Positives = 60/123 (48%), Gaps = 22/123 (17%)

Query: 22  LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTLEE  GQ EA    S L+  IE      + L  V+  GP G GKT+LA V+A   
Sbjct: 23  MRPRTLEEVVGQDEAVGPGSWLRNAIEQ-----DQLSSVILFGPAGTGKTSLAHVIAETT 77

Query: 79  GVNFRSTSGPVIAKAGDLAAL----------LTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
              F   S    A  G ++ L          L+    R +LF+DEIHR +   ++ L  A
Sbjct: 78  KATFVEVS----AIGGTVSDLRREIDAADKRLSAFGLRTILFVDEIHRFNRSQQDALLHA 133

Query: 129 MED 131
           +ED
Sbjct: 134 VED 136


>gi|145224348|ref|YP_001135026.1| recombination factor protein RarA [Mycobacterium gilvum PYR-GCK]
 gi|145216834|gb|ABP46238.1| Recombination protein MgsA [Mycobacterium gilvum PYR-GCK]
          Length = 446

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 71/142 (50%), Gaps = 15/142 (10%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP  L+E  GQ   ++  S L+  IE + A +     V+  GPPG GKTTLA ++++  
Sbjct: 30  MRPANLDEVVGQDHLLKPNSPLRRLIEGSGAAS-----VILYGPPGTGKTTLASMISQAT 84

Query: 79  GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           G  F + S        +    D+A       ++ VLFIDE+HR S   ++ L  A+E+  
Sbjct: 85  GRRFEALSALAAGVKEVRAVIDVARQAAVRGEQTVLFIDEVHRFSKTQQDALLAAVENRV 144

Query: 134 LDLMVG--EGPSARSVKINLSR 153
           + L+    E PS   V   LSR
Sbjct: 145 VLLVAATTENPSFSVVAPLLSR 166


>gi|315444680|ref|YP_004077559.1| recombination protein MgsA [Mycobacterium sp. Spyr1]
 gi|315262983|gb|ADT99724.1| Recombination protein MgsA [Mycobacterium sp. Spyr1]
          Length = 446

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 71/142 (50%), Gaps = 15/142 (10%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP  L+E  GQ   ++  S L+  IE + A +     V+  GPPG GKTTLA ++++  
Sbjct: 30  MRPANLDEVVGQDHLLKPNSPLRRLIEGSGAAS-----VILYGPPGTGKTTLASMISQAT 84

Query: 79  GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           G  F + S        +    D+A       ++ VLFIDE+HR S   ++ L  A+E+  
Sbjct: 85  GRRFEALSALAAGVKEVRAVIDVARQAAVRGEQTVLFIDEVHRFSKTQQDALLAAVENRV 144

Query: 134 LDLMVG--EGPSARSVKINLSR 153
           + L+    E PS   V   LSR
Sbjct: 145 VLLVAATTENPSFSVVAPLLSR 166


>gi|257792296|ref|YP_003182902.1| AAA ATPase central domain-containing protein [Eggerthella lenta DSM
           2243]
 gi|317490217|ref|ZP_07948705.1| ATPase [Eggerthella sp. 1_3_56FAA]
 gi|257476193|gb|ACV56513.1| AAA ATPase central domain protein [Eggerthella lenta DSM 2243]
 gi|316910711|gb|EFV32332.1| ATPase [Eggerthella sp. 1_3_56FAA]
          Length = 446

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/123 (36%), Positives = 60/123 (48%), Gaps = 22/123 (17%)

Query: 22  LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTLEE  GQ EA    S L+  IE      + L  V+  GP G GKT+LA V+A   
Sbjct: 23  MRPRTLEEVVGQDEAVGPGSWLRNAIEQ-----DQLSSVILFGPAGTGKTSLAHVIAETT 77

Query: 79  GVNFRSTSGPVIAKAGDLAAL----------LTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
              F   S    A  G ++ L          L+    R +LF+DEIHR +   ++ L  A
Sbjct: 78  KATFVEVS----AIGGTVSDLRREIDAADKRLSAFGLRTILFVDEIHRFNRSQQDALLHA 133

Query: 129 MED 131
           +ED
Sbjct: 134 VED 136


>gi|153000734|ref|YP_001366415.1| recombination factor protein RarA [Shewanella baltica OS185]
 gi|151365352|gb|ABS08352.1| AAA ATPase central domain protein [Shewanella baltica OS185]
          Length = 443

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 17/139 (12%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRT+ E+ GQ         L+  +EA +A +     ++  GPPG GKTTLA+++A   
Sbjct: 19  MRPRTIAEYIGQAHLLGEGQPLRKALEAGRAHS-----MMLWGPPGTGKTTLAELIAHYS 73

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAMED 131
             +    S  V +   D+ A +   +        R +LF+DE+HR +   ++   P +ED
Sbjct: 74  NAHVERISA-VTSGVKDIRAAIEQAKAVAESRGQRTLLFVDEVHRFNKSQQDAFLPFIED 132

Query: 132 FQLDLMVGEGPSARSVKIN 150
             + + +G      S +IN
Sbjct: 133 GTV-IFIGATTENPSFEIN 150


>gi|329926789|ref|ZP_08281197.1| ATPase, AAA family protein [Paenibacillus sp. HGF5]
 gi|328938989|gb|EGG35357.1| ATPase, AAA family protein [Paenibacillus sp. HGF5]
          Length = 435

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 63/117 (53%), Gaps = 10/117 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP +L+E+ GQ       K+   A +A  + +  +L  GPPG GKTTLA +++++   +
Sbjct: 21  MRPSSLDEYIGQEHIIGPGKLLRRAIEA--DQVSSILLYGPPGCGKTTLAHIISQQTKGH 78

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131
           F   +  V A   D+  ++   +        + +LF+DE+HR +   ++ L PA+E+
Sbjct: 79  FVRLNA-VEASVKDVREVIEQAQSNRSLYGTKTILFLDEVHRFNSSRQDALLPAVEN 134


>gi|257063510|ref|YP_003143182.1| Recombination protein MgsA [Slackia heliotrinireducens DSM 20476]
 gi|256791163|gb|ACV21833.1| Recombination protein MgsA [Slackia heliotrinireducens DSM 20476]
          Length = 446

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 63/116 (54%), Gaps = 8/116 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA---REL 78
           +RPRTL+E  GQ EA      ++ AA A A+ L  ++  GP G GKT++A ++A   R +
Sbjct: 23  MRPRTLDELKGQQEAVGE-GSWLHAAIA-ADTLSSIILFGPAGTGKTSIAHIIAETTRAI 80

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMED 131
            V   +  G V     ++AA    L     R +LF+DEIHR +   ++ L  A+E+
Sbjct: 81  FVEVSAIGGTVSDLRREIAAAEKRLYATGRRTILFVDEIHRFNRSQQDALLHAVEN 136


>gi|90407805|ref|ZP_01215982.1| putative ATPase protein [Psychromonas sp. CNPT3]
 gi|90311070|gb|EAS39178.1| putative ATPase protein [Psychromonas sp. CNPT3]
          Length = 439

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 96/221 (43%), Gaps = 28/221 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP+  +++ GQ   V     L+  +EA  A +     ++  GPPG GKTTLA+++A   
Sbjct: 18  MRPKNFDQYIGQTHIVGVGKPLRKALEAGAAHS-----MILWGPPGTGKTTLAELIAHYC 72

Query: 79  GVNFRSTSGPVIAKAGDL-AALLTNLED-----RDVLFIDEIHRLSIIVEEILYPAMEDF 132
             +    S  V A   D+ AA+    ++     R +LF+DE+HR +   ++   P +ED 
Sbjct: 73  DAHVERLSA-VTAGIKDIRAAIEIGKQNQSRGMRTLLFVDEVHRFNKTQQDAFLPFIEDG 131

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            L L +G      S ++N      + +  RV LL    +D           E+ D     
Sbjct: 132 TL-LFIGATTENPSFELN----NALLSRARVYLLKKLSEDE--------IVEVIDQACHA 178

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
           Q G K   L        ++A+  +G  R A   L  + D A
Sbjct: 179 QDGLKAHNLHFAQGVKEKLALLVQGDARKALNYLELLSDMA 219


>gi|167563730|ref|ZP_02356646.1| recombination factor protein RarA [Burkholderia oklahomensis EO147]
          Length = 436

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 121/287 (42%), Gaps = 38/287 (13%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL +  GQ         L++  E+ K  +     ++  GPPG+GKTTLA++ A   
Sbjct: 17  LRPKTLADVIGQTHLLGEGKPLRLAFESGKPHS-----MILWGPPGVGKTTLARLTALAF 71

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V+    D+   +    D         +LF+DEIHR +   ++ L P +E 
Sbjct: 72  DCEFIALSA-VLGGVKDIREAMDQARDTLNRTGRHTILFVDEIHRFNKAQQDALLPFVES 130

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
             L   +G      S ++N    + + +  +V LL +  +D           E+  L   
Sbjct: 131 -GLVTFIGATTENPSFEVN----SALLSRAQVYLLKSLTED-----------ELRQLLAR 174

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
            Q  A L GLA  D+A   +   + G  R    LL + +  A  A   TI     ++A+ 
Sbjct: 175 AQDTA-LAGLAFDDKAVDTLVGYADGDARRFLNLLEQAQTAATSAGVTTIDAAFVESAMT 233

Query: 252 RLA--IDKMG---FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
             A   DK G   +DQ+   + ++   N  G       +  G ++P+
Sbjct: 234 MNARRFDKGGDNFYDQISALHKSVRGSNPDGALYWFCRMLDGGADPK 280


>gi|126174375|ref|YP_001050524.1| recombination factor protein RarA [Shewanella baltica OS155]
 gi|125997580|gb|ABN61655.1| Recombination protein MgsA [Shewanella baltica OS155]
          Length = 443

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 17/139 (12%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRT+ E+ GQ         L+  +EA +A +     ++  GPPG GKTTLA+++A   
Sbjct: 19  MRPRTIAEYIGQAHLLGEGQPLRKALEAGRAHS-----MMLWGPPGTGKTTLAELIAHYS 73

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAMED 131
             +    S  V +   D+ A +   +        R +LF+DE+HR +   ++   P +ED
Sbjct: 74  NAHVERISA-VTSGVKDIRAAIEQAKAVAESRGQRTLLFVDEVHRFNKSQQDAFLPFIED 132

Query: 132 FQLDLMVGEGPSARSVKIN 150
             + + +G      S +IN
Sbjct: 133 GTV-IFIGATTENPSFEIN 150


>gi|209963765|ref|YP_002296680.1| recombination factor protein RarA [Rhodospirillum centenum SW]
 gi|209957231|gb|ACI97867.1| ATPase, AAA family [Rhodospirillum centenum SW]
          Length = 432

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 66/135 (48%), Gaps = 10/135 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPR LEE  GQ    +         KAR   L  ++  GPPG GKTT+A+++A+   ++
Sbjct: 18  LRPRRLEEVVGQEHLLAPEGPVGRQVKARR--LTSMILWGPPGCGKTTIARLLAQSTDLH 75

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F   S  V +   DL  +    + R       +LFIDEIHR +   ++   P +ED  + 
Sbjct: 76  FEPLSA-VFSGVADLRKVFEAAKARRAMGQGTLLFIDEIHRFNRSQQDGFLPYVEDGTVT 134

Query: 136 LMVGEGPSARSVKIN 150
           L VG      S ++N
Sbjct: 135 L-VGATTENPSFELN 148


>gi|218262943|ref|ZP_03477241.1| hypothetical protein PRABACTJOHN_02921 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223042|gb|EEC95692.1| hypothetical protein PRABACTJOHN_02921 [Parabacteroides johnsonii
           DSM 18315]
          Length = 424

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 75/144 (52%), Gaps = 18/144 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL+++ GQ   V   + L+  I+A +  +      +  GPPG+GKTTLAQ+++ +L
Sbjct: 10  LRPKTLDDYIGQKHLVGPGAVLRKMIDAGRVPS-----FILWGPPGVGKTTLAQIISNKL 64

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131
              F + S  + +   D+  ++   +          +LFIDEIHR S   ++ L  A+E 
Sbjct: 65  EAPFYTLSA-ISSGVKDVREVIEKAKGNRFFNTVSPILFIDEIHRFSKSQQDSLLNAVET 123

Query: 132 FQLDLM--VGEGPSARSVKINLSR 153
             + L+    E PS   ++  LSR
Sbjct: 124 GVVTLIGATTENPSFEVIRPLLSR 147


>gi|167752814|ref|ZP_02424941.1| hypothetical protein ALIPUT_01075 [Alistipes putredinis DSM 17216]
 gi|167659883|gb|EDS04013.1| hypothetical protein ALIPUT_01075 [Alistipes putredinis DSM 17216]
          Length = 423

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 70/144 (48%), Gaps = 18/144 (12%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPRTL+E+ GQ          + F+E        +   +  GPPG+GKTTLA++VA  L
Sbjct: 9   LRPRTLDEYIGQAHLVGQNGVFRKFLETGN-----VPSFILWGPPGVGKTTLAKIVATTL 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V +   ++  +L +   +        +LFIDEIHR +   ++ L  A+E 
Sbjct: 64  KRPFYTLSA-VTSGVKEVREVLESARKQKFFDSKPPILFIDEIHRFNKSQQDSLLGAVEQ 122

Query: 132 FQLDLM--VGEGPSARSVKINLSR 153
             + L+    E PS   +   LSR
Sbjct: 123 GVVTLIGATTENPSFEVISPLLSR 146


>gi|229220692|ref|NP_820184.4| recombination factor protein RarA [Coxiella burnetii RSA 493]
 gi|30581044|sp|P39918|RARA_COXBU RecName: Full=Replication-associated recombination protein A
          Length = 440

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 66/138 (47%), Gaps = 9/138 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  LEEF GQ       K    A +     L  ++  GPPG GKTTLA+++A++ G  
Sbjct: 14  MRPGCLEEFVGQSHLLGKDKPLFRAIEK--GKLHSMILWGPPGSGKTTLAEIIAQKAGAR 71

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRD----VLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
             S S  V+A   D+  ++   E       +LF+DE+H  +   ++   P +E   + L+
Sbjct: 72  VESISA-VLAGVKDIRDVVERAERHKGQATILFVDEVHGFNKSQQDAFLPHVEKGTITLI 130

Query: 138 --VGEGPSARSVKINLSR 153
               E PS +     LSR
Sbjct: 131 GATTENPSFQLNNALLSR 148


>gi|300937614|ref|ZP_07152423.1| replication-associated recombination protein A [Escherichia coli MS
           21-1]
 gi|300457344|gb|EFK20837.1| replication-associated recombination protein A [Escherichia coli MS
           21-1]
          Length = 428

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 80/167 (47%), Gaps = 20/167 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP  L ++ GQ   + A   L   IEA       L  ++  GPPG GKTTLA+V+AR  
Sbjct: 1   MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 55

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             +       TSG   I +A + A    N   R +LF+DE+HR +   ++   P +ED  
Sbjct: 56  NADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 115

Query: 134 LDLM--VGEGPSARSVKINLSR---FTLIAATTR--VGLLTNPLQDR 173
           +  +    E PS       LSR   + L + +T+    +LT  ++D+
Sbjct: 116 ITFIGATTENPSFELNSALLSRARVYLLKSLSTKDIEQVLTQAMEDK 162


>gi|134098618|ref|YP_001104279.1| recombination factor protein RarA [Saccharopolyspora erythraea NRRL
           2338]
 gi|291009604|ref|ZP_06567577.1| recombination factor protein RarA [Saccharopolyspora erythraea NRRL
           2338]
 gi|133911241|emb|CAM01354.1| AAA ATPase, central region [Saccharopolyspora erythraea NRRL 2338]
          Length = 453

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/152 (34%), Positives = 78/152 (51%), Gaps = 19/152 (12%)

Query: 15  EDADISL-LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           E+A +++ +RPR+L+E  GQ   +   + L+  +E A     A   VL  GPPG GKTTL
Sbjct: 25  ENAPLAVRMRPRSLDEVIGQKHLLGPGAPLRRLVEGA-----APASVLLYGPPGTGKTTL 79

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEE 123
           A +V+   G  F + S  + +   ++ A++     R        VLFIDE+HR S   ++
Sbjct: 80  ANLVSLATGRRFVALSA-LSSGVKEVRAVIEEARRRLGRTAEATVLFIDEVHRFSKTQQD 138

Query: 124 ILYPAMEDFQLDLMVG--EGPSARSVKINLSR 153
            L  A+ED  + L+    E PS   V   LSR
Sbjct: 139 ALLGAVEDRTVLLVAATTENPSFSVVAPLLSR 170


>gi|70731237|ref|YP_260978.1| recombination factor protein RarA [Pseudomonas fluorescens Pf-5]
 gi|68345536|gb|AAY93142.1| ATPase, AAA family [Pseudomonas fluorescens Pf-5]
          Length = 441

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 99/219 (45%), Gaps = 21/219 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LR   L+E+ GQ    +  K   EA +    AL  ++F GPPG+GKTTLA+++A     +
Sbjct: 17  LRATNLDEYVGQQHLLARGKPLREALEQ--GALHSMIFWGPPGVGKTTLARLLAEVSDAH 74

Query: 82  FRSTSGPV-----IAKAGDLAALLT-NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F + S  +     I +A ++A         R +LF+DE+HR +   ++   P +ED  L 
Sbjct: 75  FETVSAVLAGVKEIRQAVEIAKQQAGQYGRRTILFVDEVHRFNKSQQDAFLPYVEDGTL- 133

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           + +G      S ++N      + +  RV +L +  +   G  ++    E        +RG
Sbjct: 134 IFIGATTENPSFELN----NALLSRARVYVLKSLDEAALGTLVQRALTE--------ERG 181

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
                L+++DE    +   + G  R    LL    D AE
Sbjct: 182 LGKRQLSLSDEGFQMLLSAADGDGRRMLNLLENASDLAE 220


>gi|269123583|ref|YP_003306160.1| AAA ATPase central domain-containing protein [Streptobacillus
           moniliformis DSM 12112]
 gi|268314909|gb|ACZ01283.1| AAA ATPase central domain protein [Streptobacillus moniliformis DSM
           12112]
          Length = 395

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 94/207 (45%), Gaps = 28/207 (13%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  +EF GQ      L   +E  K  +      +F GP G GKTTLA+++A +LG ++
Sbjct: 16  RPKDFDEFYGQENIRKILFRMLENNKIISS-----IFFGPSGTGKTTLAKIIADKLGYDY 70

Query: 83  RSTSGPVIAKAGDLAAL---LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
              +  + A   D+  +     N  ++ +LF DEIHR + + ++ L   +E+  + L+  
Sbjct: 71  VYLNA-IKASKNDITQISLKAKNSVNKTLLFFDEIHRFNKLQQDSLLEDLENGNIILI-- 127

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199
            G +  +   +L+R    A  +RV L      D             ED+  I+++ AK  
Sbjct: 128 -GATTENPYFSLNR----ALLSRVLLFEFKKLDE------------EDIFNILEKIAKEE 170

Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLL 226
            L   ++    I+M S G  R +   L
Sbjct: 171 QLEYKEDILKYISMISDGDARTSINFL 197


>gi|229048107|ref|ZP_04193680.1| hypothetical protein bcere0027_40800 [Bacillus cereus AH676]
 gi|228723262|gb|EEL74634.1| hypothetical protein bcere0027_40800 [Bacillus cereus AH676]
          Length = 420

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 129/330 (39%), Gaps = 65/330 (19%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  ++E  GQ       K+     +A       ++  GPPG GKT++A  +A   G  
Sbjct: 1   MRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAIAGSTGTP 58

Query: 82  FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
           FR  +  V     D+  ++    +    VL +DE+HRL    ++ L P +E   L     
Sbjct: 59  FRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLL----- 112

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEI-----EDLKTIVQ 193
                          TLI ATT     +NP       I  R   +E+     ED+   ++
Sbjct: 113 ---------------TLIGATT-----SNPFHAINSAIRSRCQIFELHALTEEDILIGLK 152

Query: 194 R-------GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR--VRDFAEVAHAKTITRE 244
           R       G     + VTDEA    A  S G  R A   L    +  F     A  IT E
Sbjct: 153 RALEDKEKGLGEYAVTVTDEALHHFANASGGDMRSAYNALELAVLSSFTTDDQAAEITLE 212

Query: 245 IADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           IA+  L + +   DK G    D+  L+   ++  G  V              A+  L   
Sbjct: 213 IAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDVNA------------ALHYLAR- 257

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
            +I+ G +Q    GR L+ +A++ +G+  P
Sbjct: 258 -LIEAGDLQSI--GRRLLIMAYEDIGLASP 284


>gi|154495040|ref|ZP_02034045.1| hypothetical protein PARMER_04086 [Parabacteroides merdae ATCC
           43184]
 gi|154085590|gb|EDN84635.1| hypothetical protein PARMER_04086 [Parabacteroides merdae ATCC
           43184]
          Length = 426

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 75/144 (52%), Gaps = 18/144 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL+++ GQ   V   + L+  I+A +  +      +  GPPG+GKTTLAQ+++ +L
Sbjct: 10  LRPKTLDDYIGQKHLVGPGAVLRKMIDAGRVPS-----FILWGPPGVGKTTLAQIISNKL 64

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131
              F + S  + +   D+  ++   +          +LFIDEIHR S   ++ L  A+E 
Sbjct: 65  EAPFYTLSA-ISSGVKDVREVIEKAKGNRFFNTVSPILFIDEIHRFSKSQQDSLLNAVET 123

Query: 132 FQLDLM--VGEGPSARSVKINLSR 153
             + L+    E PS   ++  LSR
Sbjct: 124 GVVTLIGATTENPSFEVIRPLLSR 147


>gi|84499813|ref|ZP_00998101.1| ATPase, AAA family protein [Oceanicola batsensis HTCC2597]
 gi|84392957|gb|EAQ05168.1| ATPase, AAA family protein [Oceanicola batsensis HTCC2597]
          Length = 435

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 113/257 (43%), Gaps = 41/257 (15%)

Query: 22  LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPR L +  GQ +     + L V + +      +L  ++F GPPG+GKTT+A+++A E 
Sbjct: 22  LRPRRLADVIGQEQVLGPEAPLGVMLASG-----SLSSLVFWGPPGVGKTTIARLLADET 76

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDF 132
            + F   S  + +   DL  +      R       +LF+DEIHR +   ++   P MED 
Sbjct: 77  DLEFIQISA-IFSGVADLKKVFEAAIQRRRAGQGTLLFVDEIHRFNKAQQDGFLPHMEDG 135

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            + L+VG      S ++N       A  +R  +L   + +R G          EDL+ ++
Sbjct: 136 TI-LLVGATTENPSFELN------AALLSRAQVL---VLERLG---------PEDLERLL 176

Query: 193 QRGAKLTG--LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           QR     G  L +TD A   +   + G  R    LL  V   A       +T E     L
Sbjct: 177 QRAEAEIGQELELTDAARATLREMADGDGRA---LLNLVEQVAAWRVKAPLTPEELSTRL 233

Query: 251 LRLA--IDKMGFDQLDL 265
           +R A   DK G +  +L
Sbjct: 234 MRRAAKYDKSGEEHYNL 250


>gi|161830329|ref|YP_001597052.1| recombination factor protein RarA [Coxiella burnetii RSA 331]
 gi|161762196|gb|ABX77838.1| ATPase, AAA family [Coxiella burnetii RSA 331]
          Length = 440

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 66/138 (47%), Gaps = 9/138 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  LEEF GQ       K    A +     L  ++  GPPG GKTTLA+++A++ G  
Sbjct: 14  MRPGCLEEFVGQSHLLGKDKPLFRAIEK--GKLHSMILWGPPGSGKTTLAEIIAQKAGAR 71

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRD----VLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
             S S  V+A   D+  ++   E       +LF+DE+H  +   ++   P +E   + L+
Sbjct: 72  VESISA-VLAGVKDIRDVVERAERHKGQATILFVDEVHGFNKSQQDAFLPHVEKGTITLI 130

Query: 138 --VGEGPSARSVKINLSR 153
               E PS +     LSR
Sbjct: 131 GATTENPSFQLNNALLSR 148


>gi|262041005|ref|ZP_06014226.1| replication-associated recombination protein A [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
 gi|259041640|gb|EEW42690.1| replication-associated recombination protein A [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
          Length = 447

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 64/129 (49%), Gaps = 9/129 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  L ++ GQ    +  K    A +A    L  ++  GPPG GKTTLA+V+AR    +
Sbjct: 20  MRPENLAQYIGQQHLLAPGKPLPRAIEA--GHLHSMILWGPPGTGKTTLAEVIARYASAD 77

Query: 82  FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
                  TSG   I +A + A    N+  R +LF+DE+HR +   ++   P +ED  +  
Sbjct: 78  VERISAVTSGVKEIREAIERARQNRNVGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 137

Query: 137 M--VGEGPS 143
           +    E PS
Sbjct: 138 IGATTENPS 146


>gi|182679007|ref|YP_001833153.1| ATPase central domain-containing protein [Beijerinckia indica
           subsp. indica ATCC 9039]
 gi|182634890|gb|ACB95664.1| AAA ATPase central domain protein [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 435

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 64/133 (48%), Gaps = 17/133 (12%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKAR---AEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPR L+E  GQ           E A  R   A +L  ++F GPPG GKTT+A+++A E 
Sbjct: 22  LRPRRLDEVAGQEHLLGP-----EGALTRLVAAGSLGSLIFWGPPGTGKTTVARLLANET 76

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDF 132
            + F   S  + +   +L  +      R       +LF+DEIHR +   ++   P MED 
Sbjct: 77  KLAFVQISA-IFSGVAELKKVFEEARARRRLGQGSLLFVDEIHRFNRAQQDSFLPVMEDG 135

Query: 133 QLDLM--VGEGPS 143
            + L+    E PS
Sbjct: 136 TVTLIGATTENPS 148


>gi|94498812|ref|ZP_01305358.1| ATPase [Sphingomonas sp. SKA58]
 gi|94421741|gb|EAT06796.1| ATPase [Sphingomonas sp. SKA58]
          Length = 439

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 67/130 (51%), Gaps = 11/130 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPRTL +  GQ E  +     I    A A  L  ++F GPPG GKTT+++++A  +G+ 
Sbjct: 26  LRPRTLGDVVGQ-EHLTGPDGAIGRMVA-AGRLSSIIFWGPPGTGKTTISRLLAHAVGMR 83

Query: 82  FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F   S  V +   DL  +    +D      + +LF+DEIHR +   ++   P +E+  + 
Sbjct: 84  FEPISA-VFSGVADLKKVFAAAKDHARHGEKTLLFVDEIHRFNRAQQDSFLPFVENGTVT 142

Query: 136 LM--VGEGPS 143
           L+    E PS
Sbjct: 143 LVGATTENPS 152


>gi|325963405|ref|YP_004241311.1| recombination protein MgsA [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469492|gb|ADX73177.1| Recombination protein MgsA [Arthrobacter phenanthrenivorans Sphe3]
          Length = 472

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/137 (35%), Positives = 67/137 (48%), Gaps = 16/137 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEAL---DHVLFVGPPGLGKTTLAQVVA 75
           +RPRTL+E  GQ   +   S L+     A A          ++  GPPG GKTTLA V+A
Sbjct: 41  MRPRTLDEVVGQQHLLGQGSPLRQLAAGAGADTSGPAGPTSLILWGPPGTGKTTLAHVIA 100

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTN-LEDRD------VLFIDEIHRLSIIVEEILYPA 128
           R  G  F   S  + A   D+  ++   L  RD      VLF+DEIHR +   ++ L P 
Sbjct: 101 RGPGRKFVELSA-ITAGVKDVRRVMDEALTARDLYKTTTVLFLDEIHRFNKAQQDALLPG 159

Query: 129 MEDFQLDLMVG--EGPS 143
           +E+  + L+    E PS
Sbjct: 160 VENRWVVLVAATTENPS 176


>gi|29541759|gb|AAO90698.1| ATPase, AAA family [Coxiella burnetii RSA 493]
          Length = 427

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 66/138 (47%), Gaps = 9/138 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  LEEF GQ       K    A +     L  ++  GPPG GKTTLA+++A++ G  
Sbjct: 1   MRPGCLEEFVGQSHLLGKDKPLFRAIEK--GKLHSMILWGPPGSGKTTLAEIIAQKAGAR 58

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRD----VLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
             S S  V+A   D+  ++   E       +LF+DE+H  +   ++   P +E   + L+
Sbjct: 59  VESISA-VLAGVKDIRDVVERAERHKGQATILFVDEVHGFNKSQQDAFLPHVEKGTITLI 117

Query: 138 --VGEGPSARSVKINLSR 153
               E PS +     LSR
Sbjct: 118 GATTENPSFQLNNALLSR 135


>gi|229815204|ref|ZP_04445540.1| hypothetical protein COLINT_02250 [Collinsella intestinalis DSM
           13280]
 gi|229809214|gb|EEP44980.1| hypothetical protein COLINT_02250 [Collinsella intestinalis DSM
           13280]
          Length = 441

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/128 (34%), Positives = 63/128 (49%), Gaps = 17/128 (13%)

Query: 22  LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP TL+++ GQ +A    S L+  IE      + L  V+  GP G GKTTLA ++A   
Sbjct: 23  MRPSTLDDYVGQKKAVGPGSWLRSAIEH-----DVLSSVILYGPAGTGKTTLAHIIASHT 77

Query: 79  GVNFRSTSGPVIAKAGDL-------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
              F   S  V     DL          L   + R +LFIDEIHR S   ++ L  A+E+
Sbjct: 78  KSEFVEVSA-VTGTVKDLRREIDEAKHRLMMFDRRTILFIDEIHRFSRSQQDALLHAVEN 136

Query: 132 FQLDLMVG 139
             + +M+G
Sbjct: 137 RTV-VMIG 143


>gi|148700412|gb|EDL32359.1| Werner helicase interacting protein 1, isoform CRA_b [Mus musculus]
          Length = 590

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 75/151 (49%), Gaps = 21/151 (13%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75
           +RP TL+++ GQ  A      L+  +EA +     +  ++  GPPG GKTTLA ++A   
Sbjct: 248 MRPDTLQDYIGQSRAVGQETLLRSLLEANE-----IPSLILWGPPGCGKTTLAHIIANNS 302

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPA 128
           ++  + F + S    AK  D+  ++   ++       + +LFIDEIHR +   ++   P 
Sbjct: 303 KKHSIRFVTLSA-TNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPH 361

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLI 157
           +E   + L+    E PS +     LSR  +I
Sbjct: 362 VECGTITLIGATTENPSFQVNAALLSRCRVI 392


>gi|306844109|ref|ZP_07476703.1| recombination factor protein RarA [Brucella sp. BO1]
 gi|306275552|gb|EFM57284.1| recombination factor protein RarA [Brucella sp. BO1]
          Length = 437

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 67/135 (49%), Gaps = 10/135 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E TGQ        V      +   +L  ++F GPPG GKTT+A+++A E  + 
Sbjct: 23  LRPKHLSEVTGQEHLTGPEGVLTRMIAS--GSLGSMIFWGPPGTGKTTVARLLAGETDLA 80

Query: 82  FRSTSGPVIAKAGDL-----AALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F   S  + +   DL     AA    +  R  +LF+DEIHR +   ++   P MED  + 
Sbjct: 81  FEQISA-IFSGVADLKRVFEAARARRMSGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTV- 138

Query: 136 LMVGEGPSARSVKIN 150
           +++G      S ++N
Sbjct: 139 ILIGATTENPSFELN 153


>gi|26349529|dbj|BAC38404.1| unnamed protein product [Mus musculus]
          Length = 568

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 75/151 (49%), Gaps = 21/151 (13%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75
           +RP TL+++ GQ  A      L+  +EA +     +  ++  GPPG GKTTLA ++A   
Sbjct: 226 MRPDTLQDYIGQSRAVGQETLLRSLLEANE-----IPSLILWGPPGCGKTTLAHIIANNS 280

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPA 128
           ++  + F + S    AK  D+  ++   ++       + +LFIDEIHR +   ++   P 
Sbjct: 281 KKHSIRFVTLSA-TNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPH 339

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLI 157
           +E   + L+    E PS +     LSR  +I
Sbjct: 340 VECGTITLIGATTENPSFQVNAALLSRCRVI 370


>gi|257055554|ref|YP_003133386.1| recombination factor protein RarA [Saccharomonospora viridis DSM
           43017]
 gi|256585426|gb|ACU96559.1| Recombination protein MgsA [Saccharomonospora viridis DSM 43017]
          Length = 457

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 69/135 (51%), Gaps = 20/135 (14%)

Query: 22  LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPR+L+E  GQ       + L+  +E A   +     VL  GPPG GKTTLA +V+   
Sbjct: 38  MRPRSLDEVVGQQHLLGPGAPLRRLVEGATPAS-----VLLYGPPGTGKTTLANLVSTAT 92

Query: 79  GVNFRSTSGPVIAKAGDLAALLT--------NLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           G  F + S  + A   ++  ++         +LED  VLFIDE+HR S   ++ L  A+E
Sbjct: 93  GRRFVALSA-LSAGVKEVRGVIEEARRRRQYDLED-TVLFIDEVHRFSKTQQDALLGAVE 150

Query: 131 DFQLDLMVG--EGPS 143
           D  + L+    E PS
Sbjct: 151 DRTVLLVAATTENPS 165


>gi|154491485|ref|ZP_02031111.1| hypothetical protein PARMER_01094 [Parabacteroides merdae ATCC
           43184]
 gi|154088460|gb|EDN87505.1| hypothetical protein PARMER_01094 [Parabacteroides merdae ATCC
           43184]
          Length = 246

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 70/144 (48%), Gaps = 18/144 (12%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPRTL+E+ GQ          + F+E     +      +  GPPG+GKTTLA++VA  L
Sbjct: 9   LRPRTLDEYIGQAHLVGQNGVFRKFLETGNVPS-----FILWGPPGVGKTTLAKIVATTL 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V +   ++  +L +   +        +LFIDEIHR +   ++ L  A+E 
Sbjct: 64  KRPFYTLSA-VTSGVKEVREVLESARKQKFFDSKPPILFIDEIHRFNKSQQDSLLGAVEQ 122

Query: 132 FQLDLM--VGEGPSARSVKINLSR 153
             + L+    E PS   +   LSR
Sbjct: 123 GVVTLIGATTENPSFEVISPLLSR 146


>gi|307295569|ref|ZP_07575405.1| AAA ATPase central domain protein [Sphingobium chlorophenolicum
           L-1]
 gi|306878608|gb|EFN09828.1| AAA ATPase central domain protein [Sphingobium chlorophenolicum
           L-1]
          Length = 440

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 65/133 (48%), Gaps = 17/133 (12%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKAR---AEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPRTL +  GQ           E A  R   A  L  ++  GPPG GKTT+++++A  +
Sbjct: 27  LRPRTLADVVGQDHLTGP-----EGAIGRMVAAGRLSSIILWGPPGTGKTTISRLLADAV 81

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDF 132
           G+ F   S  V +   DL  +    +D      + +LF+DEIHR +   ++   P +ED 
Sbjct: 82  GMRFEPISA-VFSGVADLKKVFAAAKDHARRGEKTLLFVDEIHRFNRAQQDSFLPFVEDG 140

Query: 133 QLDLM--VGEGPS 143
            + L+    E PS
Sbjct: 141 TVTLVGATTENPS 153


>gi|206969731|ref|ZP_03230685.1| ATPase, AAA family [Bacillus cereus AH1134]
 gi|228941567|ref|ZP_04104116.1| hypothetical protein bthur0008_42040 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228974497|ref|ZP_04135064.1| hypothetical protein bthur0003_42500 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228981091|ref|ZP_04141392.1| hypothetical protein bthur0002_42520 [Bacillus thuringiensis Bt407]
 gi|206735419|gb|EDZ52587.1| ATPase, AAA family [Bacillus cereus AH1134]
 gi|228778632|gb|EEM26898.1| hypothetical protein bthur0002_42520 [Bacillus thuringiensis Bt407]
 gi|228785214|gb|EEM33226.1| hypothetical protein bthur0003_42500 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228818123|gb|EEM64199.1| hypothetical protein bthur0008_42040 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|326942181|gb|AEA18077.1| recombination factor protein RarA [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 428

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 86/330 (26%), Positives = 130/330 (39%), Gaps = 65/330 (19%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  ++E  GQ       K+     +A       ++  GPPG GKT++A  +A   G  
Sbjct: 9   MRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAIAGSTGTP 66

Query: 82  FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
           FR  +  V     D+  ++    +    VL +DE+HRL    ++ L P +E   L     
Sbjct: 67  FRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLL----- 120

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEI----ED-----LK 189
                          TLI ATT     +NP       I  R   +E+    ED     LK
Sbjct: 121 ---------------TLIGATT-----SNPFHAINSAIRSRCQIFELHALTEDDILIGLK 160

Query: 190 TIVQRGAKLTG---LAVTDEAACEIAMRSRGTPRIAGRLLRR--VRDFAEVAHAKTITRE 244
             ++   K  G   + VTDEA    A  S G  R A   L    +  F     A  IT E
Sbjct: 161 RALEDKEKGLGEYAVTVTDEALHHFANASGGDMRSAYNALELAVLSSFTTDDQAAEITLE 220

Query: 245 IADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           IA+  L + +   DK G    D+  L+   ++  G  V              A+  L   
Sbjct: 221 IAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDVNA------------ALHYLAR- 265

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
            +I+ G +Q    GR L+ +A++ +G+  P
Sbjct: 266 -LIEAGDLQSI--GRRLLIMAYEDIGLASP 292


>gi|222148826|ref|YP_002549783.1| recombination factor protein RarA [Agrobacterium vitis S4]
 gi|221735812|gb|ACM36775.1| ATPase AAA family protein [Agrobacterium vitis S4]
          Length = 435

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 66/135 (48%), Gaps = 10/135 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L + TGQ        V   A    + +L  ++F GPPG GKTT+A++++ E  + 
Sbjct: 23  LRPKALSDVTGQDHLTGQDGVL--ARMIASGSLGSMIFWGPPGTGKTTVARLLSGEADLA 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F   S  + +   DL  +      R       +LF+DEIHR +   ++   P MED  + 
Sbjct: 81  FEQISA-IFSGVADLKRVFEGARARRMSGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTV- 138

Query: 136 LMVGEGPSARSVKIN 150
           ++VG      S ++N
Sbjct: 139 ILVGATTENPSFELN 153


>gi|332292456|ref|YP_004431065.1| AAA ATPase central domain protein [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332170542|gb|AEE19797.1| AAA ATPase central domain protein [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 425

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 67/143 (46%), Gaps = 15/143 (10%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ LE++  Q           +A KA    +  ++  GPPG+GKTTLA +++ E    
Sbjct: 9   LRPKKLEDYLSQQHLVGPNGSLQQALKAGI--IPSLILWGPPGIGKTTLATIISEESNRP 66

Query: 82  FRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           F + S           VI KA     L T  +   +LFIDEIHR S   ++ L  A+E  
Sbjct: 67  FYTLSAINSGVKDIRDVIDKAKQSGGLFT--QKNPILFIDEIHRFSKSQQDSLLGAVERG 124

Query: 133 QLDLM--VGEGPSARSVKINLSR 153
            + L+    E PS   +   LSR
Sbjct: 125 WVTLIGATTENPSFEVIPALLSR 147


>gi|295706706|ref|YP_003599781.1| ATPase, AAA family [Bacillus megaterium DSM 319]
 gi|294804365|gb|ADF41431.1| ATPase, AAA family [Bacillus megaterium DSM 319]
          Length = 425

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 3/111 (2%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  L++  GQ       K+     KA    L  ++  GPPG+GKTT+A  +A+     
Sbjct: 10  MRPTHLDDVIGQQHLVGKDKMIYRMVKANH--LSSMILYGPPGVGKTTIATAIAKTTNTA 67

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
           FR  +  V  K   ++ A    +  + +L +DE+HRL    ++ L P +E+
Sbjct: 68  FRQLNAVVNNKKDMEIVAEEAKMSGKVILLLDEVHRLDKAKQDFLLPYLEN 118


>gi|258647387|ref|ZP_05734856.1| ATPase, AAA family [Prevotella tannerae ATCC 51259]
 gi|260852753|gb|EEX72622.1| ATPase, AAA family [Prevotella tannerae ATCC 51259]
          Length = 422

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/144 (33%), Positives = 75/144 (52%), Gaps = 18/144 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP +L+++ GQ   V   + L+  I+A +     +   +  GPPG+GKTTLA++VA + 
Sbjct: 8   LRPTSLDDYVGQQHLVGPGAVLRNMIDAGR-----ITSFILWGPPGVGKTTLARIVATQF 62

Query: 79  GVNFRSTSGPVIAKAGDL------AALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V +   D+      AA      D+  +LFIDEIHR S   ++ L  A+E+
Sbjct: 63  KAPFYTLSA-VNSGVKDVRDVIEKAAKNRFFSDQSPILFIDEIHRFSKSQQDSLLAAVEN 121

Query: 132 FQLDLM--VGEGPSARSVKINLSR 153
             + L+    E PS   ++  LSR
Sbjct: 122 GTITLIGATTENPSFEVIRPLLSR 145


>gi|254821817|ref|ZP_05226818.1| recombination factor protein RarA [Mycobacterium intracellulare
           ATCC 13950]
          Length = 454

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 89/184 (48%), Gaps = 38/184 (20%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP +L+E  GQ   +   S L+  +E +      +   +  GPPG GKTTLA ++++  
Sbjct: 35  MRPASLDEVVGQDHLLAPGSPLRRLVEGS-----GVASAILYGPPGSGKTTLAALISQAT 89

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           G  F + S  + A   D+ A++          ++ VLFIDE+HR S   ++ L  A+E+ 
Sbjct: 90  GRRFEALSA-LSAGVKDVRAVIEKARTALLHGEQTVLFIDEVHRFSKTQQDALLSAVENR 148

Query: 133 QLDLMVG--EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
            + L+    E PS          F+++A          PL  R  I ++L     +D++T
Sbjct: 149 VVLLVAATTENPS----------FSVVA----------PLLSRSLI-LQLRPLSADDIRT 187

Query: 191 IVQR 194
           +VQR
Sbjct: 188 VVQR 191


>gi|212212420|ref|YP_002303356.1| recombination factor protein RarA [Coxiella burnetii CbuG_Q212]
 gi|212010830|gb|ACJ18211.1| ATPase, AAA family [Coxiella burnetii CbuG_Q212]
          Length = 427

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 67/138 (48%), Gaps = 9/138 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP +LEEF GQ       K    A +     L  ++  GPPG GKTTLA+++A++ G  
Sbjct: 1   MRPGSLEEFVGQSHLLGKDKPLFRAIEK--GKLHSMILWGPPGSGKTTLAEIMAQKAGAR 58

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRD----VLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
             S S  V+A   D+  ++   E       +LF+DE+H  +   ++   P +E   + L+
Sbjct: 59  VESISA-VLAGVKDIRDVVERAERHKGQATILFVDEVHGFNKSQQDAFLPHVEKGTITLI 117

Query: 138 --VGEGPSARSVKINLSR 153
               E PS +     LSR
Sbjct: 118 GATTENPSFQLNNALLSR 135


>gi|148380525|ref|YP_001255066.1| ATPase, AAA family [Clostridium botulinum A str. ATCC 3502]
 gi|153933551|ref|YP_001384812.1| recombination factor protein RarA [Clostridium botulinum A str.
           ATCC 19397]
 gi|153936060|ref|YP_001388283.1| recombination factor protein RarA [Clostridium botulinum A str.
           Hall]
 gi|148290009|emb|CAL84128.1| putative ATPase [Clostridium botulinum A str. ATCC 3502]
 gi|152929595|gb|ABS35095.1| ATPase, AAA family [Clostridium botulinum A str. ATCC 19397]
 gi|152931974|gb|ABS37473.1| ATPase, AAA family [Clostridium botulinum A str. Hall]
          Length = 416

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 110/257 (42%), Gaps = 26/257 (10%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           L+RP+ LE+F GQ    S  K      K ++  + + +F GPPG GKTTLA ++A  +  
Sbjct: 7   LMRPKKLEDFVGQKHILSENKPLYNLMKNKS--ICNSIFYGPPGTGKTTLANIMANYVDK 64

Query: 81  NFR--STSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
            F   + +   I    ++ + + +L +    VL+IDE+   +   ++ L   +ED ++ L
Sbjct: 65  KFYRLNATTASIKDIQEITSSINSLLNYSGVVLYIDELQHFTKKQQQALLEFIEDGRVIL 124

Query: 137 MVG--EGPSARSVKINLSRFTLIAAT--TRVGLL------TNPLQDRFGIPIRLNFYEIE 186
           +    E P     K  LSR  +       R  ++       N L D+ GI I+  F  +E
Sbjct: 125 IASTTENPYFVIHKAILSRCNIFQFKPLNREDIILGLEKAINKLIDK-GINIKYTFESLE 183

Query: 187 DLKTIVQ----RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV-----AH 237
            +  I Q    +   +  LAV       I +       +A   +R      E      A 
Sbjct: 184 YISEICQGDYRKAYNILELAVNSHCGFNIEINLDYIESLAQSNIRADATGDEYYNILSAF 243

Query: 238 AKTITREIADAALLRLA 254
            K+I    ADAA+  LA
Sbjct: 244 QKSIRGSDADAAVHYLA 260


>gi|221068782|ref|ZP_03544887.1| AAA ATPase central domain protein [Comamonas testosteroni KF-1]
 gi|220713805|gb|EED69173.1| AAA ATPase central domain protein [Comamonas testosteroni KF-1]
          Length = 446

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 82/327 (25%), Positives = 132/327 (40%), Gaps = 60/327 (18%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPRTL E  GQ         L++  E+ +  +      +  GPPG+GKTT+A+++A   
Sbjct: 21  LRPRTLAEVIGQQHVLGEGMPLRLAFESGRPHS-----CILWGPPGVGKTTIARLMADAF 75

Query: 79  GVNFRSTSGPVIAKAGDL--------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
              F S S  V+    D+        AA    L+ R ++F+DE+HR +   ++   P +E
Sbjct: 76  DAQFISISA-VLGGVKDIREAVEQAQAARSGLLQQRTIVFVDEVHRFNKSQQDAFLPHVE 134

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL--LTNPLQDRFGIPIRLNFYEIEDL 188
                                  FT I ATT      + + L  R  + + L     +DL
Sbjct: 135 S--------------------GLFTFIGATTENPSFEVNSALLSRAAVYV-LQSLTTDDL 173

Query: 189 KTIVQRGAKLTGL-AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           K IV +   +  +  + DEA   +   + G  R     L  +   AE A  ++IT    D
Sbjct: 174 KQIVAKAQVIKAVPTIEDEALDRLIAYADGDARRLLNTLETLSITAEQAGVESIT----D 229

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
             LL++  ++M              R   GG    +TISA     R +  D    +  + 
Sbjct: 230 GWLLKVLGERM-------------RRYDKGGEQFYDTISALHKSVRGSDPDAALYWFCRM 276

Query: 308 GFIQRTPR--GRLLMPIAWQHLGIDIP 332
                 PR   R ++ +AW+ +G+  P
Sbjct: 277 LDGGADPRYLARRIVRMAWEDIGLADP 303


>gi|83645244|ref|YP_433679.1| recombination factor protein RarA [Hahella chejuensis KCTC 2396]
 gi|83633287|gb|ABC29254.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [Hahella chejuensis KCTC 2396]
          Length = 448

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 79/324 (24%), Positives = 133/324 (41%), Gaps = 47/324 (14%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR ++E+ GQ       K   +A +   + L  V+F GPPG+GKT+LA++VA   G  
Sbjct: 24  MRPRVIDEYIGQTHLLDADKPLRKALER--DQLHSVIFWGPPGVGKTSLARLVAGYTGAE 81

Query: 82  FRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           F + S        I +    A   +    + ++F+DE+HR +   ++   P +E+     
Sbjct: 82  FITLSAVQSGVKEIREVSQRARANSQSGRKTIVFVDEVHRFNKSQQDAFLPYVEE----- 136

Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGL--LTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
                            F  I ATT      L N L  R  +   L    I+DL  ++QR
Sbjct: 137 ---------------GAFVFIGATTENPSFELNNALLSRARV-YPLKPLTIDDLTALLQR 180

Query: 195 -------GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI-TREIA 246
                  G   T  +   +    IA  + G  R A  +L  + D A+      I +RE+ 
Sbjct: 181 ALSDAENGLGQTSWSYDADLLRMIAEAANGDARQALNILETMSDLADPGEQGGILSRELL 240

Query: 247 DAALLRLAI---DKMG---FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
            A+++++++   DK G   +DQ+   + ++   N  G       +  G  +P      ++
Sbjct: 241 -ASVMQVSLKRFDKGGDAFYDQISALHKSVRGSNPDGALYWFARMLNGGCDPLYVARRVV 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAW 324
              M  +      PRG  L   AW
Sbjct: 300 R--MASEDIGNADPRGLDLALSAW 321


>gi|300361432|ref|ZP_07057609.1| AAA family ATPase [Lactobacillus gasseri JV-V03]
 gi|300354051|gb|EFJ69922.1| AAA family ATPase [Lactobacillus gasseri JV-V03]
          Length = 432

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 17/117 (14%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L+E  GQ     N K+     +A+   L  ++  GPPG+GKT++A  +A      
Sbjct: 8   MRPKNLDEVVGQEHLVGNKKIIRRMVEAKL--LSSMILYGPPGIGKTSIASAIAGSTKYA 65

Query: 82  FRSTSGP--------VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           FR  +          ++A+ G ++  +       +L +DEIHRL    ++ L P +E
Sbjct: 66  FRKLNAATDTKKDLQIVAEEGKMSGTV-------ILLLDEIHRLDKTKQDFLLPLLE 115


>gi|254504344|ref|ZP_05116495.1| ATPase, AAA family protein [Labrenzia alexandrii DFL-11]
 gi|222440415|gb|EEE47094.1| ATPase, AAA family protein [Labrenzia alexandrii DFL-11]
          Length = 434

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 60/130 (46%), Gaps = 11/130 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  LE+  GQ              K R   L  ++F GPPG GKTT+A+++A E  + 
Sbjct: 22  MRPARLEDVVGQDHLLGPEGTLSRMLKTRT--LGSLIFWGPPGTGKTTIARLLANETDLA 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F   S  + +   DL  +      R       +LF+DEIHR +   ++   P MED  + 
Sbjct: 80  FEQISA-IFSGVADLKKVFEAARARRMGGRATLLFVDEIHRFNRAQQDSFLPVMEDGTIT 138

Query: 136 LM--VGEGPS 143
           L+    E PS
Sbjct: 139 LVGATTENPS 148


>gi|218700590|ref|YP_002408219.1| recombination factor protein RarA [Escherichia coli IAI39]
 gi|218370576|emb|CAR18383.1| recombination protein [Escherichia coli IAI39]
          Length = 447

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 80/167 (47%), Gaps = 20/167 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP  L ++ GQ   + A   L   IEA       L  ++  GPPG GKTTLA+V+AR  
Sbjct: 20  MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             +       TSG   I +A + A    N   R +LF+DE+HR +   ++   P +ED  
Sbjct: 75  NADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134

Query: 134 LDLM--VGEGPSARSVKINLSR---FTLIAATTR--VGLLTNPLQDR 173
           +  +    E PS       LSR   + L + +T+    +LT  ++D+
Sbjct: 135 ITFIGATTENPSFELNSALLSRARVYLLKSLSTKDIEQVLTQAMEDK 181


>gi|294501359|ref|YP_003565059.1| ATPase [Bacillus megaterium QM B1551]
 gi|294351296|gb|ADE71625.1| ATPase, AAA family [Bacillus megaterium QM B1551]
          Length = 425

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 3/111 (2%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  L++  GQ       K+     KA    L  ++  GPPG+GKTT+A  +A+     
Sbjct: 10  MRPTHLDDVIGQQHLVGKDKMIYRMVKANH--LSSMILYGPPGVGKTTIATAIAKTTNTA 67

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
           FR  +  V  K   ++ A    +  + +L +DE+HRL    ++ L P +E+
Sbjct: 68  FRQLNAVVNNKKDMEIVAEEAKMSGKVILLLDEVHRLDKAKQDFLLPYLEN 118


>gi|188579618|ref|YP_001923063.1| recombination factor protein RarA [Methylobacterium populi BJ001]
 gi|179343116|gb|ACB78528.1| AAA ATPase central domain protein [Methylobacterium populi BJ001]
          Length = 440

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 61/130 (46%), Gaps = 11/130 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPR L E  GQ               +R+  L  ++F GPPG GKTT+A+++A E  ++
Sbjct: 25  LRPRRLSEVVGQEHLTGPDGALTRLLASRS--LGSLVFWGPPGTGKTTVARLLAHETELH 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F   S  + +   DL  +      R       +LF+DEIHR +    +   P MED  + 
Sbjct: 83  FEQISA-IFSGIADLRKVFEAARKRRATGQGTLLFVDEIHRFNRSQLDAFLPVMEDGTVT 141

Query: 136 LM--VGEGPS 143
           L+    E PS
Sbjct: 142 LVGATTENPS 151


>gi|30022475|ref|NP_834106.1| recombination factor protein RarA [Bacillus cereus ATCC 14579]
 gi|218235142|ref|YP_002369209.1| recombination factor protein RarA [Bacillus cereus B4264]
 gi|229129680|ref|ZP_04258648.1| hypothetical protein bcere0015_41220 [Bacillus cereus BDRD-Cer4]
 gi|29898033|gb|AAP11307.1| ATPase, AAA family [Bacillus cereus ATCC 14579]
 gi|218163099|gb|ACK63091.1| ATPase, AAA family [Bacillus cereus B4264]
 gi|228653797|gb|EEL09667.1| hypothetical protein bcere0015_41220 [Bacillus cereus BDRD-Cer4]
          Length = 428

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 129/330 (39%), Gaps = 65/330 (19%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  ++E  GQ       K+     +A       ++  GPPG GKT++A  +A   G  
Sbjct: 9   MRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAIAGSTGTP 66

Query: 82  FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
           FR  +  V     D+  ++    +    VL +DE+HRL    ++ L P +E   L     
Sbjct: 67  FRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLL----- 120

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEI-----EDLKTIVQ 193
                          TLI ATT     +NP       I  R   +E+     ED+   ++
Sbjct: 121 ---------------TLIGATT-----SNPFHAINSAIRSRCQIFELHALTEEDILIGLK 160

Query: 194 R-------GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR--VRDFAEVAHAKTITRE 244
           R       G     + VTDEA    A  S G  R A   L    +  F     A  IT E
Sbjct: 161 RALEDKEKGLGEYAVTVTDEALHHFANASGGDMRSAYNALELAVLSSFTTDDQAAEITLE 220

Query: 245 IADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           IA+  L + +   DK G    D+  L+   ++  G  V              A+  L   
Sbjct: 221 IAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDVNA------------ALHYLAR- 265

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
            +I+ G +Q    GR L+ +A++ +G+  P
Sbjct: 266 -LIEAGDLQSI--GRRLLIMAYEDIGLASP 292


>gi|85059088|ref|YP_454790.1| recombination factor protein RarA [Sodalis glossinidius str.
           'morsitans']
 gi|84779608|dbj|BAE74385.1| putative ATPase protein [Sodalis glossinidius str. 'morsitans']
          Length = 447

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 65/129 (50%), Gaps = 9/129 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP TLEE+ GQ    +  K      K     L  ++  GPPG GKTTLA+++AR   V+
Sbjct: 20  MRPSTLEEYIGQSHLLAADKPLPRVIKN--GQLHSMILWGPPGTGKTTLAELIARYGQVD 77

Query: 82  FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
                  TSG   I +A + A L  +   R +LF+DE+HR +   ++   P +E+  +  
Sbjct: 78  VERLSAVTSGIKEIREAIERACLNRDAGRRTILFVDEVHRFNKGQQDAFLPHIEEGTITF 137

Query: 137 M--VGEGPS 143
           +    E PS
Sbjct: 138 IGATTENPS 146


>gi|320451464|ref|YP_004203560.1| AAA family ATPase [Thermus scotoductus SA-01]
 gi|320151633|gb|ADW23011.1| ATPase, AAA family [Thermus scotoductus SA-01]
          Length = 415

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/129 (34%), Positives = 67/129 (51%), Gaps = 13/129 (10%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPR+L+E  GQ         L+  +EA +     L  ++  GPPG GKTTLAQ++A  +
Sbjct: 11  LRPRSLDEVLGQPHLTGPKGLLRRMLEAKR-----LSSMVLFGPPGTGKTTLAQILAEGV 65

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           G  F   S  V A   ++ A++     E   VLF+DE+HR +   ++ L P +E   L L
Sbjct: 66  GKPFLRLSA-VEAGVKEVRAVVERARREGGLVLFLDEVHRFNRTQQDALLPHLESGLLTL 124

Query: 137 M--VGEGPS 143
           +    E P+
Sbjct: 125 IGATAENPA 133


>gi|23015800|ref|ZP_00055567.1| COG2256: ATPase related to the helicase subunit of the Holliday
           junction resolvase [Magnetospirillum magnetotacticum
           MS-1]
          Length = 430

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 75/148 (50%), Gaps = 19/148 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP  L+E  GQ   + A + L   + A +     L  V+  GPPG GKTT+A+++A ++
Sbjct: 18  LRPGALDEVVGQGHLLAATAPLGRMLAAGR-----LASVILWGPPGCGKTTIARLLAEKV 72

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAMEDF 132
           G+ F   S  V +   DL  +    E R       +LF+DEIHR +   ++   P +E+ 
Sbjct: 73  GLYFEPLSA-VFSGVADLRKVFDAAEKRKQTGRSTLLFVDEIHRFNRAQQDGFLPYVENG 131

Query: 133 QLDLMVGEGPSARSVKIN---LSRFTLI 157
            + ++VG      S ++N   LSR  ++
Sbjct: 132 TV-VLVGATTENPSFELNGALLSRCQVL 158


>gi|297845668|ref|XP_002890715.1| AAA-type ATPase family protein [Arabidopsis lyrata subsp. lyrata]
 gi|297336557|gb|EFH66974.1| AAA-type ATPase family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 525

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 79/170 (46%), Gaps = 38/170 (22%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRTL++  GQ    S   +   A K+    L  ++F GPPG GKT++A+ +       
Sbjct: 107 MRPRTLDDVVGQEHLLSPASLLRSAIKS--NRLPSIVFWGPPGTGKTSIAKSL------- 157

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-----------------RDVLFIDEIHRLSIIVEEI 124
             S+  P + +   L+A+ + ++D                 R VLF+DE+HR +   ++ 
Sbjct: 158 INSSKDPSLYRFVSLSAVTSGVKDVRDAVESAKRLNLEGKKRTVLFMDEVHRFNKSQQDS 217

Query: 125 LYPAMEDFQLDLMVG---EGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
             P +ED  + L +G   E PS   +   LSR        RV L  NPL+
Sbjct: 218 FLPVIEDGSI-LFIGATTENPSFHLITPLLSR-------CRV-LTLNPLK 258


>gi|291085633|ref|ZP_06353556.2| replication-associated recombination protein A [Citrobacter youngae
           ATCC 29220]
 gi|291070482|gb|EFE08591.1| replication-associated recombination protein A [Citrobacter youngae
           ATCC 29220]
          Length = 428

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP  L ++ GQ   + A   L   IEA       L  ++  GPPG GKTTLA+V+AR  
Sbjct: 1   MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 55

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             +       TSG   I +A + A    N   R +LF+DE+HR +   ++   P +ED  
Sbjct: 56  NADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 115

Query: 134 LDLM--VGEGPS 143
           +  +    E PS
Sbjct: 116 ITFIGATTENPS 127


>gi|330826232|ref|YP_004389535.1| AAA ATPase central domain-containing protein [Alicycliphilus
           denitrificans K601]
 gi|329311604|gb|AEB86019.1| AAA ATPase central domain protein [Alicycliphilus denitrificans
           K601]
          Length = 439

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 134/327 (40%), Gaps = 60/327 (18%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPRTL E  GQ         L++  E+ +  +      +  GPPG+GKTT+A+++A   
Sbjct: 16  LRPRTLGEVVGQQHVLGPGMPLRLAFESGRPHS-----CILWGPPGVGKTTIARLMAEAF 70

Query: 79  GVNFRSTSGPVIAKAGDL--------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
              F S S  V+    D+        +A    +  R ++F+DE+HR +   ++   P +E
Sbjct: 71  DAQFISISA-VLGGVKDIRDAVQLAESAAGGLMPQRTIVFVDEVHRFNKSQQDAFLPHVE 129

Query: 131 D--FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
              F       E PS       LSR    AA   +  LT+                 +DL
Sbjct: 130 SGLFTFVGATTENPSFEVNSALLSR----AAVYVLQPLTS-----------------DDL 168

Query: 189 KTIVQRGAKLTGL-AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           K IV R   +  L A+ +EA   +   + G  R   RLL  +   + V   +     I D
Sbjct: 169 KQIVVRAQDIQALPAIENEALERLIAYADGDAR---RLLNTLETLS-VTAGQAKVETITD 224

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           A LL++  ++M              R   GG    +TISA     R +  D    ++++ 
Sbjct: 225 AWLLQVLGERM-------------RRYDKGGEQFYDTISALHKSVRGSDPDAALYWLVRM 271

Query: 308 GFIQRTPR--GRLLMPIAWQHLGIDIP 332
                 PR   R ++ +AW+ +G+  P
Sbjct: 272 LDGGADPRYMARRIVRMAWEDIGLADP 298


>gi|300311231|ref|YP_003775323.1| recombination factor RarA protein [Herbaspirillum seropedicae SmR1]
 gi|300074016|gb|ADJ63415.1| recombination factor RarA protein [Herbaspirillum seropedicae SmR1]
          Length = 434

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 15/118 (12%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL+E  GQ         L++  ++ K  +     ++F GPPG+GKTTLA++ A   
Sbjct: 17  LRPKTLDEVIGQSHLLGEGKPLRLAFQSGKPHS-----MIFWGPPGVGKTTLARLTATAF 71

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130
              F + S  V +   D+ A +   E         +LF+DEIHR +   ++ L P  E
Sbjct: 72  ECEFIALSA-VFSGVKDIRAAMEQAEQNLAMGKHTILFVDEIHRFNKSQQDALLPYAE 128


>gi|116629863|ref|YP_815035.1| recombination factor protein RarA [Lactobacillus gasseri ATCC
           33323]
 gi|311110500|ref|ZP_07711897.1| ATPase, AAA family [Lactobacillus gasseri MV-22]
 gi|116095445|gb|ABJ60597.1| Recombination protein MgsA [Lactobacillus gasseri ATCC 33323]
 gi|311065654|gb|EFQ45994.1| ATPase, AAA family [Lactobacillus gasseri MV-22]
          Length = 432

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 17/117 (14%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L+E  GQ     N K+     +A+   L  ++  GPPG+GKT++A  +A      
Sbjct: 8   MRPKNLDEVVGQEHLVGNKKIIRRMVEAKL--LSSMILYGPPGIGKTSIASAIAGSTKYA 65

Query: 82  FRSTSGP--------VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           FR  +          ++A+ G ++  +       +L +DEIHRL    ++ L P +E
Sbjct: 66  FRKLNAATDTKKDLQIVAEEGKMSGTV-------ILLLDEIHRLDKTKQDFLLPLLE 115


>gi|113460956|ref|YP_719023.1| recombination factor protein RarA [Haemophilus somnus 129PT]
 gi|112822999|gb|ABI25088.1| Recombination protein MgsA [Haemophilus somnus 129PT]
          Length = 446

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 86/169 (50%), Gaps = 26/169 (15%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH-----VLFVGPPGLGKTTLAQVVAR 76
           +RP+TL+++ GQ       +  I A K   +A+++     ++F GPPG GKTTLA+++A+
Sbjct: 20  MRPQTLKQYCGQ-------EHLIGAGKPLYKAIENGHIHSMIFWGPPGTGKTTLAEIIAQ 72

Query: 77  ELGVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
           ++       S        I ++ + A     +  + +LF+DE+HR +   ++   P +E+
Sbjct: 73  QIHAQVERISAVTAGVKEIRESIERAKQNRLMGQQTILFVDEVHRFNKTQQDAFLPHIEN 132

Query: 132 FQLDLMVGEGPSARSVKIN---LSR---FTLIAATTR--VGLLTNPLQD 172
             + + +G      S ++N   LSR   + L   TT   V +L N +QD
Sbjct: 133 GTI-IFIGATTENPSFELNNALLSRVKVYILKPLTTSNIVTVLQNAIQD 180


>gi|238853694|ref|ZP_04644062.1| recombination factor protein RarA [Lactobacillus gasseri 202-4]
 gi|238833732|gb|EEQ26001.1| recombination factor protein RarA [Lactobacillus gasseri 202-4]
          Length = 432

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 17/117 (14%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L+E  GQ     N K+     +A+   L  ++  GPPG+GKT++A  +A      
Sbjct: 8   MRPKNLDEVVGQEHLVGNKKIIRRMVEAKL--LSSMILYGPPGIGKTSIASAIAGSTKYA 65

Query: 82  FRSTSGP--------VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           FR  +          ++A+ G ++  +       +L +DEIHRL    ++ L P +E
Sbjct: 66  FRKLNAATDTKKDLQIVAEEGKMSGTV-------ILLLDEIHRLDKTKQDFLLPLLE 115


>gi|150025417|ref|YP_001296243.1| recombination factor protein RarA [Flavobacterium psychrophilum
           JIP02/86]
 gi|149771958|emb|CAL43432.1| Putative AAA family ATPase [Flavobacterium psychrophilum JIP02/86]
          Length = 425

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/144 (33%), Positives = 68/144 (47%), Gaps = 17/144 (11%)

Query: 22  LRPRTLEEFTGQVEAC-SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           +RP+ L+++  Q      N  +  + AK    +L   +F GPPG GKTTL+Q++A+E   
Sbjct: 9   IRPQNLQDYISQSHLVGQNGSLTHQIAKGIIPSL---IFWGPPGTGKTTLSQIIAQESKR 65

Query: 81  NFRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            F   S           VI KA     L T      +LFIDEIHR S   ++ L  A+E 
Sbjct: 66  PFYILSAINSGVKDIRDVIEKAKQSGGLFTT--KNPILFIDEIHRFSKSQQDSLLAAVEK 123

Query: 132 FQLDLM--VGEGPSARSVKINLSR 153
             + L+    E PS   +   LSR
Sbjct: 124 GWITLIGATTENPSFEVIPALLSR 147


>gi|300784614|ref|YP_003764905.1| ATPase [Amycolatopsis mediterranei U32]
 gi|299794128|gb|ADJ44503.1| putative ATPase [Amycolatopsis mediterranei U32]
          Length = 458

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/144 (34%), Positives = 70/144 (48%), Gaps = 18/144 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPR+L E  GQ   +   + L+  +E A     A   VL  GPPG GKTTLA +V+   
Sbjct: 41  MRPRSLGEVVGQQHLLREGAPLRRLVEGA-----APASVLLYGPPGTGKTTLANLVSIAT 95

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131
           G  F + S  + A   ++  ++     R        VLFIDE+HR S   ++ L  A+ED
Sbjct: 96  GRRFVAMSA-LSAGVKEVRGVIEEARRRRQYNAENTVLFIDEVHRFSKTQQDALLGAVED 154

Query: 132 FQLDLMVG--EGPSARSVKINLSR 153
             + L+    E PS   V   LSR
Sbjct: 155 RTVLLVAATTENPSFSVVSPLLSR 178


>gi|268319729|ref|YP_003293385.1| hypothetical protein FI9785_1258 [Lactobacillus johnsonii FI9785]
 gi|262398104|emb|CAX67118.1| conserved hypothetical protein [Lactobacillus johnsonii FI9785]
          Length = 431

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 17/117 (14%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L+E  GQ     N K+     +A+   L  ++  GPPG+GKT++A  +A      
Sbjct: 8   MRPKNLDEVVGQEHLVGNKKIIRRMVEAKL--LSSMILYGPPGIGKTSIASAIAGSTKYA 65

Query: 82  FRSTSGP--------VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           FR  +          ++A+ G ++  +       +L +DEIHRL    ++ L P +E
Sbjct: 66  FRKLNAATDTKKDLQIVAEEGKMSGTV-------ILLLDEIHRLDKTKQDFLLPLLE 115


>gi|226949925|ref|YP_002805016.1| ATPase, AAA family [Clostridium botulinum A2 str. Kyoto]
 gi|226840930|gb|ACO83596.1| ATPase, AAA family [Clostridium botulinum A2 str. Kyoto]
          Length = 416

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 110/257 (42%), Gaps = 26/257 (10%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           L+RP+ LE+F GQ    S  K      K ++  + + +F GPPG GKTTLA ++A  +  
Sbjct: 7   LMRPKKLEDFVGQKHILSENKPLYNLMKNKS--ICNSIFYGPPGTGKTTLANIMANYVDK 64

Query: 81  NFR--STSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
            F   + +   I    ++ + + +L +    VL+IDE+   +   ++ L   +ED ++ L
Sbjct: 65  KFYRLNATTASIKDIQEITSSINSLLNYSGVVLYIDELQHFTKKQQQALLEFIEDGRVIL 124

Query: 137 MVG--EGPSARSVKINLSRFTLIAAT--TRVGLL------TNPLQDRFGIPIRLNFYEIE 186
           +    E P     K  LSR  +       R  ++       N L D+ GI I+  F  +E
Sbjct: 125 IASTTENPYFVIHKAILSRCNIFQFKPLNREDIILGLEKAINKLIDK-GINIKYTFESLE 183

Query: 187 DLKTIVQ----RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV-----AH 237
            +  I Q    +   +  LAV       I +       +A   +R      E      A 
Sbjct: 184 YISEICQGDYRKAYNILELAVNSHCGFNIEINLDYIESLAQSNIRADATGDEYYNILSAF 243

Query: 238 AKTITREIADAALLRLA 254
            K+I    ADAA+  LA
Sbjct: 244 QKSIRGSDADAAVHYLA 260


>gi|148553805|ref|YP_001261387.1| recombination factor protein RarA [Sphingomonas wittichii RW1]
 gi|148498995|gb|ABQ67249.1| Recombination protein MgsA [Sphingomonas wittichii RW1]
          Length = 481

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 67/138 (48%), Gaps = 16/138 (11%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEA---LDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPRTL +  GQ           E A  R  A   L  ++  GPPG GKTT+A+++A  +
Sbjct: 68  LRPRTLADVIGQEHLTGP-----EGAIGRMVAAGRLSSLVLWGPPGTGKTTIARLLADAV 122

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDF 132
           G+ F   S  V +   DL  +     +      R +LF+DEIHR +   ++   P +ED 
Sbjct: 123 GLRFAPVSA-VFSGVADLKKIFAEAREHARIGTRTLLFVDEIHRFNRAQQDSFLPYVEDG 181

Query: 133 QLDLMVGEGPSARSVKIN 150
            + ++VG      S ++N
Sbjct: 182 TV-VLVGATTENPSFELN 198


>gi|261405433|ref|YP_003241674.1| AAA ATPase central domain-containing protein [Paenibacillus sp.
           Y412MC10]
 gi|261281896|gb|ACX63867.1| AAA ATPase central domain protein [Paenibacillus sp. Y412MC10]
          Length = 435

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 63/117 (53%), Gaps = 10/117 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP +L+E+ GQ       K+   A +A  + +  +L  GPPG GKTTLA +++++   +
Sbjct: 21  MRPSSLDEYIGQEHIIGPGKLLRRAIEA--DQVSSILLYGPPGCGKTTLAHIISQQTKGH 78

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131
           F   +  V A   D+  ++   +        + +LF+DE+HR +   ++ L PA+E+
Sbjct: 79  FVRLNA-VEATVKDVREVIEQAQSNRSLYGTKTILFLDEVHRFNSSRQDALLPAVEN 134


>gi|68536116|ref|YP_250821.1| recombination factor protein RarA [Corynebacterium jeikeium K411]
 gi|68263715|emb|CAI37203.1| conserved hypothetical protein [Corynebacterium jeikeium K411]
          Length = 464

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 77/151 (50%), Gaps = 17/151 (11%)

Query: 22  LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPR+L+E  GQ +     S L+  I+     +     V+  GPPG GKTT+A ++++  
Sbjct: 41  MRPRSLDEVVGQDKVLGPGSPLRRLIDGHGDTS-----VILYGPPGTGKTTIASLISQVS 95

Query: 79  GVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           G  F + S  + +   ++ A++        L +  VLFIDE+HR S   ++ L  A+E+ 
Sbjct: 96  GRRFEALSA-LNSGVKEVRAIIEQARKRLVLGEHTVLFIDEVHRFSKTQQDALLSAVENR 154

Query: 133 QLDLMVG--EGPSARSVKINLSRFTLIAATT 161
            + L+    E PS   V   LSR  L+  +T
Sbjct: 155 TVLLVAATTENPSFSVVSPLLSRSLLVQLST 185


>gi|33860637|ref|NP_892198.1| recombination factor protein RarA [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33633579|emb|CAE18536.1| putative ATPase, AAA family [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 429

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 66/120 (55%), Gaps = 16/120 (13%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L++F GQ     +  +   A     + + +++F GPPG+GKTTL ++++     N
Sbjct: 23  LRPKNLDDFFGQESILGHDSLLRNAI--LNDKVGNIIFSGPPGVGKTTLIEIISS----N 76

Query: 82  FRST---SGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131
            RS+      V++   +L   + N ++R        +LFIDE+HR + + ++ L P++E+
Sbjct: 77  TRSSLIKLNAVLSSIKELRTEIANAKERLRSSNRKTILFIDEVHRFTSVQQDALLPSIEN 136


>gi|126439052|ref|YP_001060001.1| recombination factor protein RarA [Burkholderia pseudomallei 668]
 gi|126218545|gb|ABN82051.1| replication-associated recombination protein A [Burkholderia
           pseudomallei 668]
          Length = 436

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 81/326 (24%), Positives = 136/326 (41%), Gaps = 58/326 (17%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL +  GQ         L++  E+ K  +     ++  GPPG+GKTTLA++ A   
Sbjct: 17  LRPKTLADVIGQTHLLGEGKPLRLAFESGKPHS-----MILWGPPGVGKTTLARLTALAF 71

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V+    D+   +    D         +LF+DEIHR +   ++ L P +E 
Sbjct: 72  DCEFIALSA-VLGGVKDIREAMEQARDTLNRTGRHTILFVDEIHRFNKAQQDALLPFVES 130

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
             L   +G      S ++N    + + +  +V +L +  +D              +L+ +
Sbjct: 131 -GLVTFIGATTENPSFEVN----SALLSRAQVYVLKSLAED--------------ELRQL 171

Query: 192 VQRG--AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
           ++R     L GLA  D+A   +   + G  R    LL + +  A  A   TI     DAA
Sbjct: 172 LKRAQDVALGGLAFDDKAVDTLVGYADGDARRFLNLLEQAQTAASSAGVTTI-----DAA 226

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNF-GGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            +  A             +TM AR F  GG    + ISA     R +  D    ++ +  
Sbjct: 227 FVESA-------------MTMNARRFDKGGDNFYDQISALHKSVRGSSPDGALYWLCRML 273

Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIP 332
                P+   R ++ +AW+ +G+  P
Sbjct: 274 DGGADPKYLARRVVRMAWEDIGLADP 299


>gi|312897412|ref|ZP_07756836.1| recombination factor protein RarA [Megasphaera micronuciformis
           F0359]
 gi|310621473|gb|EFQ05009.1| recombination factor protein RarA [Megasphaera micronuciformis
           F0359]
          Length = 443

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 80/153 (52%), Gaps = 20/153 (13%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75
           +RP+T+++  GQ         L+ FIE      + +  ++F GPPG+GKTTLA+V+A   
Sbjct: 20  IRPKTIDDIIGQGHLLGEGRILRRFIEN-----DTVPSMIFWGPPGVGKTTLARVIAGHT 74

Query: 76  RELGVNFRSTSGPV--IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +   V+F + +G +  I +    A   T   ++ +LF+DEIHR +   ++   P +E   
Sbjct: 75  KAAFVDFSAVTGGIKEIRQIMQKADENTRYGEKTILFVDEIHRFNKAQQDAFLPFVEKGS 134

Query: 134 LDLMVGEGPSARSVKIN---LSR---FTLIAAT 160
           + +++G      S +IN   LSR   F L A T
Sbjct: 135 I-VLIGATTENPSFEINGALLSRCKVFVLHALT 166


>gi|262066993|ref|ZP_06026605.1| replication-associated recombination protein A [Fusobacterium
           periodonticum ATCC 33693]
 gi|291379280|gb|EFE86798.1| replication-associated recombination protein A [Fusobacterium
           periodonticum ATCC 33693]
          Length = 174

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 63/127 (49%), Gaps = 18/127 (14%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKAR----AEALDHVLFVGPPGLGKTTLAQVVARE 77
           LRP+ L++F GQ       K+  +    R      +L + +F GPPG GK++L ++++  
Sbjct: 18  LRPKNLDDFVGQE------KLLGKDGVIRRLILNSSLSNSIFYGPPGCGKSSLGEIISNT 71

Query: 78  LGVNFRSTSGPVIAKAGDLAALLT----NLE---DRDVLFIDEIHRLSIIVEEILYPAME 130
           L  NF   +    A   D+  ++     N+E    R +LF+DEIHR +   ++ L    E
Sbjct: 72  LDCNFEKLNATT-ASVSDIRTMVETAKRNIELYNKRTILFLDEIHRFNKNQQDALLSYTE 130

Query: 131 DFQLDLM 137
           D  L L+
Sbjct: 131 DGTLTLI 137


>gi|170717512|ref|YP_001784604.1| recombination factor protein RarA [Haemophilus somnus 2336]
 gi|168825641|gb|ACA31012.1| AAA ATPase central domain protein [Haemophilus somnus 2336]
          Length = 446

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 86/169 (50%), Gaps = 26/169 (15%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH-----VLFVGPPGLGKTTLAQVVAR 76
           +RP+TL+++ GQ       +  I A K   +A+++     ++F GPPG GKTTLA+++A+
Sbjct: 20  MRPQTLKQYCGQ-------EHLIGAGKPLYKAIENGHIHSMIFWGPPGTGKTTLAEIIAQ 72

Query: 77  ELGVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
           ++       S        I ++ + A     +  + +LF+DE+HR +   ++   P +E+
Sbjct: 73  QIHAQVERISAVTAGVKEIRESIERAKQNRLMGQQTILFVDEVHRFNKTQQDAFLPHIEN 132

Query: 132 FQLDLMVGEGPSARSVKIN---LSR---FTLIAATTR--VGLLTNPLQD 172
             + + +G      S ++N   LSR   + L   TT   V +L N +QD
Sbjct: 133 GTI-IFIGATTENPSFELNNALLSRVKVYILKPLTTSNIVTVLQNAIQD 180


>gi|284991584|ref|YP_003410138.1| AAA ATPase central domain-containing protein [Geodermatophilus
           obscurus DSM 43160]
 gi|284064829|gb|ADB75767.1| AAA ATPase central domain protein [Geodermatophilus obscurus DSM
           43160]
          Length = 445

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 72/151 (47%), Gaps = 22/151 (14%)

Query: 22  LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPR+L+E  GQ       + L+  +EA     E +  VL+ GPPG GKTTLA V++   
Sbjct: 25  MRPRSLDEVVGQSHLLGPRAPLRRLVEAD----EPMSLVLY-GPPGTGKTTLAHVISLAT 79

Query: 79  GVNFRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
              F   S           VIA A      LT    R VLFIDE+HR S   ++ L  A+
Sbjct: 80  KRQFVQLSALDAGVKEVRAVIASA---KRELTYAGRRTVLFIDEVHRFSKTQQDSLLSAV 136

Query: 130 EDFQLDLMVG--EGPSARSVKINLSRFTLIA 158
           ED  + L+    E P    V   LSR  ++A
Sbjct: 137 EDRIVSLIAATTENPFFSVVSPLLSRSLVLA 167


>gi|168180541|ref|ZP_02615205.1| ATPase, AAA family [Clostridium botulinum NCTC 2916]
 gi|182668511|gb|EDT80490.1| ATPase, AAA family [Clostridium botulinum NCTC 2916]
          Length = 416

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 110/257 (42%), Gaps = 26/257 (10%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           L+RP+ LE+F GQ    S  K      K ++  + + +F GPPG GKTTLA ++A  +  
Sbjct: 7   LMRPKKLEDFVGQKHILSENKPLYNLMKNKS--ICNSIFYGPPGTGKTTLANIMANYVDK 64

Query: 81  NFR--STSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
            F   + +   I    ++ + + +L +    VL+IDE+   +   ++ L   +ED ++ L
Sbjct: 65  KFYRLNATTASIKDIQEITSSINSLLNYSGVVLYIDELQHFTKKQQQALLEFIEDGRVIL 124

Query: 137 MVG--EGPSARSVKINLSRFTLIAAT--TRVGLL------TNPLQDRFGIPIRLNFYEIE 186
           +    E P     K  LSR  +       R  ++       N L D+ GI I+  F  +E
Sbjct: 125 IASTTENPYFVIHKAILSRCNIFQFKPLNREDIILGLEKAINKLIDK-GINIKYTFESLE 183

Query: 187 DLKTIVQ----RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV-----AH 237
            +  I Q    +   +  LAV       I +       +A   +R      E      A 
Sbjct: 184 YISEICQGDYRKAYNILELAVNSHCGFNIEINLDYIESLAQSNIRADATGDEYYNILSAF 243

Query: 238 AKTITREIADAALLRLA 254
            K+I    ADAA+  LA
Sbjct: 244 QKSIRGSDADAAVHYLA 260


>gi|313680216|ref|YP_004057955.1| recombination protein mgsa [Oceanithermus profundus DSM 14977]
 gi|313152931|gb|ADR36782.1| Recombination protein MgsA [Oceanithermus profundus DSM 14977]
          Length = 435

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 67/133 (50%), Gaps = 17/133 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPRTL+E  GQ         L+V +E  +     L  ++F GPPG GKTTLA+++A  +
Sbjct: 14  LRPRTLDEVVGQEHLTGPGKPLRVMLENGR-----LASMIFWGPPGTGKTTLARILANGV 68

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDF 132
              F + S  V A   ++   +   ++        VLF+DE+HR +   ++ L P +E  
Sbjct: 69  DARFVAMSA-VSAGVKEVREAVKQAQEAVSAGRPTVLFLDEVHRFNKAQQDALLPHVESG 127

Query: 133 QLDLM--VGEGPS 143
            L L+    E PS
Sbjct: 128 LLTLIGATTENPS 140


>gi|83949758|ref|ZP_00958491.1| ATPase, AAA family protein [Roseovarius nubinhibens ISM]
 gi|83837657|gb|EAP76953.1| ATPase, AAA family protein [Roseovarius nubinhibens ISM]
          Length = 437

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 71/138 (51%), Gaps = 14/138 (10%)

Query: 21  LLRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           L+RP++L E  GQ +     + L V +E       +L  ++  GPPG+GKTT+A+++A E
Sbjct: 25  LMRPQSLGEVIGQEQVLGPEAPLGVMLENG-----SLGSLILWGPPGVGKTTIARLLAAE 79

Query: 78  LGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
             ++F   S      P + K  + A +        +LF+DEIHR +   ++   P MED 
Sbjct: 80  TDLHFVQISAIFTGVPELRKVFEEARMRHGNGRGTLLFVDEIHRFNKAQQDGFLPHMEDG 139

Query: 133 QLDLMVGEGPSARSVKIN 150
            + L+VG      S ++N
Sbjct: 140 TI-LLVGATTENPSFELN 156


>gi|49475767|ref|YP_033808.1| recombination factor protein RarA [Bartonella henselae str.
           Houston-1]
 gi|49238574|emb|CAF27815.1| ATPase, aaa family [Bartonella henselae str. Houston-1]
          Length = 439

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 65/135 (48%), Gaps = 10/135 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP +L + TGQ        +      A   ++  ++F GPPG GKTT+A+++A E    
Sbjct: 24  MRPHSLNDVTGQSHLVGEKGLLSRIVAA--GSIGSMIFWGPPGTGKTTVARLLALETNFA 81

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F   S  +     +L  +  + + R       VLF+DEIHR +   ++   P MED  + 
Sbjct: 82  FEQVSA-IFTGVAELKKIFESAQARFMSGSQTVLFVDEIHRFNRAQQDSFLPVMEDGTV- 139

Query: 136 LMVGEGPSARSVKIN 150
           +++G      S ++N
Sbjct: 140 ILIGATTENPSFELN 154


>gi|116748300|ref|YP_844987.1| recombination factor protein RarA [Syntrophobacter fumaroxidans
           MPOB]
 gi|116697364|gb|ABK16552.1| Recombination protein MgsA [Syntrophobacter fumaroxidans MPOB]
          Length = 451

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 69/141 (48%), Gaps = 12/141 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP +L+EF GQ       K+     ++R       +  GPPG GKTTLA ++A +   +
Sbjct: 25  MRPGSLDEFVGQDHLLGRGKILDRVIRSRR--FQSFVLWGPPGSGKTTLAAIIAAQTQTH 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
               S  V+A   ++   +T  +        R  LF+DEIHRL+   ++ L P +E+  L
Sbjct: 83  MIHLSA-VMAGTREIREAVTEAKQVWAKQKLRTWLFMDEIHRLNKAQQDTLLPHIENGTL 141

Query: 135 DLM--VGEGPSARSVKINLSR 153
            L+    E PS   ++  LSR
Sbjct: 142 LLLGATTENPSFEIIRPLLSR 162


>gi|120598817|ref|YP_963391.1| recombination factor protein RarA [Shewanella sp. W3-18-1]
 gi|120558910|gb|ABM24837.1| Recombination protein MgsA [Shewanella sp. W3-18-1]
          Length = 443

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 69/265 (26%), Positives = 121/265 (45%), Gaps = 41/265 (15%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPR++ E+ GQ         L+  +EA +A +     ++  GPPG GKTTLA+++A+  
Sbjct: 19  MRPRSIAEYIGQAHLLGEGQPLRKALEAGRAHS-----MMLWGPPGTGKTTLAELIAQYS 73

Query: 79  GVNFRS----TSG--PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
             +       TSG   + A      A+  +   R +LF+DE+HR +   ++   P +ED 
Sbjct: 74  NAHVERISAVTSGVKEIRAAIEQAKAIAESRGQRTLLFVDEVHRFNKSQQDAFLPFIEDG 133

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI- 191
            + + +G      S +IN      + +  RV L+            RL+  EI  + T  
Sbjct: 134 TV-IFIGATTENPSFEIN----NALLSRARVYLIK-----------RLSNDEIAHIVTQA 177

Query: 192 ---VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
               +RG  L  L + +    ++A    G  R A  LL  + D   V+   T T E+   
Sbjct: 178 LADTERGLGLRQLEMPESVLIKLAQLCDGDARKALNLLELMSDM--VSDNDTFTLEM--- 232

Query: 249 ALLRLAIDKM-GFDQLDLRYLTMIA 272
            L+++A  ++ GFD+   ++  +I+
Sbjct: 233 -LVQVAGHQVAGFDKNGDQFYDLIS 256


>gi|220915883|ref|YP_002491187.1| AAA ATPase central domain protein [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219953737|gb|ACL64121.1| AAA ATPase central domain protein [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 437

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 68/134 (50%), Gaps = 18/134 (13%)

Query: 22  LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPR LE+F GQ       + L+  IEA     + +  ++  GPPG GKTTLA++VA+  
Sbjct: 21  MRPRRLEDFAGQEHVLGPGTALRRSIEA-----DQVPSLILWGPPGTGKTTLARIVAQRT 75

Query: 79  GVNFRSTSGPVIAKAGDLAALLT-------NLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
           G +F   S  V+    ++  ++            R +LF+DEIHR +   ++   P +ED
Sbjct: 76  GADFVPFSA-VLGGVKEIREIVAAARDRRRMHRKRTILFVDEIHRFTRAQQDAFLPHVED 134

Query: 132 FQLDLM--VGEGPS 143
             + L+    E PS
Sbjct: 135 GTITLIGATTENPS 148


>gi|329667579|gb|AEB93527.1| hypothetical protein LJP_1205 [Lactobacillus johnsonii DPC 6026]
          Length = 431

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 17/117 (14%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L+E  GQ     N K+     +A+   L  ++  GPPG+GKT++A  +A      
Sbjct: 8   MRPKNLDEVVGQEHLVGNKKIIRRMVEAKL--LSSMILYGPPGIGKTSIASAIAGSTKYA 65

Query: 82  FRSTSGP--------VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           FR  +          ++A+ G ++  +       +L +DEIHRL    ++ L P +E
Sbjct: 66  FRKLNAATDTKKDLQIVAEEGKMSGTV-------ILLLDEIHRLDKTKQDFLLPLLE 115


>gi|316933557|ref|YP_004108539.1| AAA ATPase central domain-containing protein [Rhodopseudomonas
           palustris DX-1]
 gi|315601271|gb|ADU43806.1| AAA ATPase central domain protein [Rhodopseudomonas palustris DX-1]
          Length = 443

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 64/135 (47%), Gaps = 10/135 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPR+L +  GQ              + R   L  ++F GPPG GKTT+A+++A    ++
Sbjct: 30  LRPRSLADVVGQDHIVGPDGALTRMLETRT--LGSLVFWGPPGTGKTTVARLLADATELH 87

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F   S  V +   DL  +      R       +LF+DE+HR +   ++   P MED  + 
Sbjct: 88  FEQISA-VFSGVADLKKVFDAARARREMGTGTLLFVDEVHRFNKAQQDSFLPVMEDGTV- 145

Query: 136 LMVGEGPSARSVKIN 150
           +MVG      S ++N
Sbjct: 146 VMVGATTENPSFELN 160


>gi|42518874|ref|NP_964804.1| recombination factor protein RarA [Lactobacillus johnsonii NCC 533]
 gi|41583160|gb|AAS08770.1| hypothetical protein LJ_0949 [Lactobacillus johnsonii NCC 533]
          Length = 431

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 17/117 (14%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L+E  GQ     N K+     +A+   L  ++  GPPG+GKT++A  +A      
Sbjct: 8   MRPKNLDEVVGQEHLVGNKKIIRRMVEAKL--LSSMILYGPPGIGKTSIASAIAGSTKYA 65

Query: 82  FRSTSGP--------VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           FR  +          ++A+ G ++  +       +L +DEIHRL    ++ L P +E
Sbjct: 66  FRKLNAATDTKKDLQIVAEEGKMSGTV-------ILLLDEIHRLDKTKQDFLLPLLE 115


>gi|295135714|ref|YP_003586390.1| recombination factor protein RarA [Zunongwangia profunda SM-A87]
 gi|294983729|gb|ADF54194.1| recombination factor protein RarA [Zunongwangia profunda SM-A87]
          Length = 424

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 66/143 (46%), Gaps = 15/143 (10%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+TL+++  Q           +  K     +  ++F GPPG+GKTTLA ++A E    
Sbjct: 9   LRPKTLDQYLSQTHLIGEKGALRQQIKRGI--IPSMIFWGPPGVGKTTLANIIANESDRP 66

Query: 82  FRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           F + S           VI KA     L T      +LFIDEIHR S   ++ L  A+E  
Sbjct: 67  FFTLSAISSGVKDVREVIEKAKRSDGLFTT--KSPILFIDEIHRFSKSQQDSLLGAVEKG 124

Query: 133 QLDLM--VGEGPSARSVKINLSR 153
            + L+    E PS   +   LSR
Sbjct: 125 WVTLIGATTENPSFEVISALLSR 147


>gi|67643955|ref|ZP_00442698.1| ATPase, AAA family protein [Burkholderia mallei GB8 horse 4]
 gi|76809377|ref|YP_334448.1| recombination factor protein RarA [Burkholderia pseudomallei 1710b]
 gi|121599128|ref|YP_992137.1| recombination factor protein RarA [Burkholderia mallei SAVP1]
 gi|124386623|ref|YP_001028581.1| recombination factor protein RarA [Burkholderia mallei NCTC 10229]
 gi|126448329|ref|YP_001081520.1| recombination factor protein RarA [Burkholderia mallei NCTC 10247]
 gi|134280424|ref|ZP_01767135.1| ATPase, AAA family [Burkholderia pseudomallei 305]
 gi|166998317|ref|ZP_02264177.1| ATPase, AAA family protein [Burkholderia mallei PRL-20]
 gi|167816971|ref|ZP_02448651.1| recombination factor protein RarA [Burkholderia pseudomallei 91]
 gi|254175353|ref|ZP_04882013.1| ATPase, AAA family protein [Burkholderia mallei ATCC 10399]
 gi|254191852|ref|ZP_04898355.1| ATPase, AAA family [Burkholderia pseudomallei Pasteur 52237]
 gi|254196125|ref|ZP_04902550.1| ATPase, AAA family [Burkholderia pseudomallei S13]
 gi|254202387|ref|ZP_04908750.1| ATPase, AAA family protein [Burkholderia mallei FMH]
 gi|254207719|ref|ZP_04914069.1| ATPase, AAA family protein [Burkholderia mallei JHU]
 gi|254261086|ref|ZP_04952140.1| replication-associated recombination protein A [Burkholderia
           pseudomallei 1710a]
 gi|254356381|ref|ZP_04972657.1| ATPase, AAA family protein [Burkholderia mallei 2002721280]
 gi|76578830|gb|ABA48305.1| ATPase, AAA family protein [Burkholderia pseudomallei 1710b]
 gi|121227938|gb|ABM50456.1| ATPase, AAA family protein [Burkholderia mallei SAVP1]
 gi|124294643|gb|ABN03912.1| ATPase, AAA family [Burkholderia mallei NCTC 10229]
 gi|126241199|gb|ABO04292.1| ATPase, AAA family protein [Burkholderia mallei NCTC 10247]
 gi|134248431|gb|EBA48514.1| ATPase, AAA family [Burkholderia pseudomallei 305]
 gi|147746634|gb|EDK53711.1| ATPase, AAA family protein [Burkholderia mallei FMH]
 gi|147751613|gb|EDK58680.1| ATPase, AAA family protein [Burkholderia mallei JHU]
 gi|148025378|gb|EDK83532.1| ATPase, AAA family protein [Burkholderia mallei 2002721280]
 gi|157939523|gb|EDO95193.1| ATPase, AAA family [Burkholderia pseudomallei Pasteur 52237]
 gi|160696397|gb|EDP86367.1| ATPase, AAA family protein [Burkholderia mallei ATCC 10399]
 gi|169652869|gb|EDS85562.1| ATPase, AAA family [Burkholderia pseudomallei S13]
 gi|238525428|gb|EEP88856.1| ATPase, AAA family protein [Burkholderia mallei GB8 horse 4]
 gi|243065389|gb|EES47575.1| ATPase, AAA family protein [Burkholderia mallei PRL-20]
 gi|254219775|gb|EET09159.1| replication-associated recombination protein A [Burkholderia
           pseudomallei 1710a]
          Length = 436

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 81/326 (24%), Positives = 136/326 (41%), Gaps = 58/326 (17%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL +  GQ         L++  E+ K  +     ++  GPPG+GKTTLA++ A   
Sbjct: 17  LRPKTLADVIGQTHLLGEGKPLRLAFESGKPHS-----MILWGPPGVGKTTLARLTALAF 71

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V+    D+   +    D         +LF+DEIHR +   ++ L P +E 
Sbjct: 72  DCEFIALSA-VLGGVKDIREAMEQARDTLNRTGRHTILFVDEIHRFNKAQQDALLPFVES 130

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
             L   +G      S ++N    + + +  +V +L +  +D              +L+ +
Sbjct: 131 -GLVTFIGATTENPSFEVN----SALLSRAQVYVLKSLAED--------------ELRQL 171

Query: 192 VQRG--AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
           ++R     L GLA  D+A   +   + G  R    LL + +  A  A   TI     DAA
Sbjct: 172 LKRAQDVALGGLAFDDKAVDTLVGYADGDARRFLNLLEQAQTAASSAGVTTI-----DAA 226

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNF-GGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            +  A             +TM AR F  GG    + ISA     R +  D    ++ +  
Sbjct: 227 FVESA-------------MTMNARRFDKGGDNFYDQISALHKSVRGSSPDGALYWLCRML 273

Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIP 332
                P+   R ++ +AW+ +G+  P
Sbjct: 274 DGGADPKYLARRVVRMAWEDIGLADP 299


>gi|126454407|ref|YP_001067279.1| recombination factor protein RarA [Burkholderia pseudomallei 1106a]
 gi|167720767|ref|ZP_02404003.1| recombination factor protein RarA [Burkholderia pseudomallei DM98]
 gi|167739751|ref|ZP_02412525.1| recombination factor protein RarA [Burkholderia pseudomallei 14]
 gi|167825381|ref|ZP_02456852.1| recombination factor protein RarA [Burkholderia pseudomallei 9]
 gi|167851463|ref|ZP_02476971.1| recombination factor protein RarA [Burkholderia pseudomallei B7210]
 gi|167895448|ref|ZP_02482850.1| recombination factor protein RarA [Burkholderia pseudomallei 7894]
 gi|167903834|ref|ZP_02491039.1| recombination factor protein RarA [Burkholderia pseudomallei NCTC
           13177]
 gi|167912100|ref|ZP_02499191.1| recombination factor protein RarA [Burkholderia pseudomallei 112]
 gi|167920074|ref|ZP_02507165.1| recombination factor protein RarA [Burkholderia pseudomallei
           BCC215]
 gi|217421197|ref|ZP_03452702.1| ATPase, AAA family [Burkholderia pseudomallei 576]
 gi|237813404|ref|YP_002897855.1| recombination factor protein RarA [Burkholderia pseudomallei
           MSHR346]
 gi|242315892|ref|ZP_04814908.1| replication-associated recombination protein A [Burkholderia
           pseudomallei 1106b]
 gi|126228049|gb|ABN91589.1| ATPase, AAA family [Burkholderia pseudomallei 1106a]
 gi|217396609|gb|EEC36626.1| ATPase, AAA family [Burkholderia pseudomallei 576]
 gi|237506600|gb|ACQ98918.1| recombination factor protein RarA [Burkholderia pseudomallei
           MSHR346]
 gi|242139131|gb|EES25533.1| replication-associated recombination protein A [Burkholderia
           pseudomallei 1106b]
          Length = 436

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 81/326 (24%), Positives = 136/326 (41%), Gaps = 58/326 (17%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL +  GQ         L++  E+ K  +     ++  GPPG+GKTTLA++ A   
Sbjct: 17  LRPKTLADVIGQTHLLGEGKPLRLAFESGKPHS-----MILWGPPGVGKTTLARLTALAF 71

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V+    D+   +    D         +LF+DEIHR +   ++ L P +E 
Sbjct: 72  DCEFIALSA-VLGGVKDIREAMEQARDTLNRTGRHTILFVDEIHRFNKAQQDALLPFVES 130

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
             L   +G      S ++N    + + +  +V +L +  +D              +L+ +
Sbjct: 131 -GLVTFIGATTENPSFEVN----SALLSRAQVYVLKSLAED--------------ELRQL 171

Query: 192 VQRG--AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
           ++R     L GLA  D+A   +   + G  R    LL + +  A  A   TI     DAA
Sbjct: 172 LKRAQDVALGGLAFDDKAVDTLVGYADGDARRFLNLLEQAQTAASSAGVTTI-----DAA 226

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNF-GGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            +  A             +TM AR F  GG    + ISA     R +  D    ++ +  
Sbjct: 227 FVESA-------------MTMNARRFDKGGDNFYDQISALHKSVRGSSPDGALYWLCRML 273

Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIP 332
                P+   R ++ +AW+ +G+  P
Sbjct: 274 DGGADPKYLARRVVRMAWEDIGLADP 299


>gi|300921074|ref|ZP_07137458.1| replication-associated recombination protein A [Escherichia coli MS
           115-1]
 gi|300411925|gb|EFJ95235.1| replication-associated recombination protein A [Escherichia coli MS
           115-1]
          Length = 428

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP  L ++ GQ   + A   L   IEA       L  ++  GPPG GKTTLA+V+AR  
Sbjct: 1   MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 55

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             +       TSG   I +A + A    N   R +LF+DE+HR +   ++   P +ED  
Sbjct: 56  NADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 115

Query: 134 LDLM--VGEGPS 143
           +  +    E PS
Sbjct: 116 ITFIGATTENPS 127


>gi|258653471|ref|YP_003202627.1| ATPase AAA central domain-containing protein [Nakamurella
           multipartita DSM 44233]
 gi|258556696|gb|ACV79638.1| AAA ATPase central domain protein [Nakamurella multipartita DSM
           44233]
          Length = 494

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/144 (34%), Positives = 69/144 (47%), Gaps = 18/144 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL+E  GQ   +   + L+  ++       A   +L  GPPG GKTTLA +VA   
Sbjct: 47  MRPRTLDEVVGQQHLLGPGAPLRRLVQGG-----APSSMLLYGPPGTGKTTLATLVAGST 101

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131
           G  F   S  V A   ++ A++     R        VLFIDE+HR S   ++ L  A+ED
Sbjct: 102 GRFFAQLSA-VSAGVKEVRAVIAEATTRLRRTGEQTVLFIDEVHRFSRTQQDSLLGAVED 160

Query: 132 FQLDLMVG--EGPSARSVKINLSR 153
             + L+    E P    V   LSR
Sbjct: 161 RTIVLVAATTENPFFSVVSPLLSR 184


>gi|229105033|ref|ZP_04235687.1| hypothetical protein bcere0019_41690 [Bacillus cereus Rock3-28]
 gi|228678410|gb|EEL32633.1| hypothetical protein bcere0019_41690 [Bacillus cereus Rock3-28]
          Length = 428

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 86/330 (26%), Positives = 130/330 (39%), Gaps = 65/330 (19%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  ++E  GQ       K+     +A       ++  GPPG GKT++A  +A   G  
Sbjct: 9   MRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAIAGSTGTP 66

Query: 82  FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
           FR  +  V     D+  ++    +    VL +DE+HRL    ++ L P +E   L     
Sbjct: 67  FRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLL----- 120

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEI----ED-----LK 189
                          TLI ATT     +NP       I  R   +E+    ED     LK
Sbjct: 121 ---------------TLIGATT-----SNPFHAINSAIRSRCQIFELHALTEDDILIGLK 160

Query: 190 TIVQRGAKLTG---LAVTDEAACEIAMRSRGTPRIAGRLLRR--VRDFAEVAHAKTITRE 244
             ++   K  G   + VTDEA    A  S G  R A   L    +  F     A  IT E
Sbjct: 161 RALEDKEKGLGEYDVTVTDEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLE 220

Query: 245 IADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           IA+  L + +   DK G    D+  L+   ++  G  V              A+  L   
Sbjct: 221 IAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDVNA------------ALHYLAR- 265

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
            +I+ G +Q    GR L+ +A++ +G+  P
Sbjct: 266 -LIEAGDLQSI--GRRLLIMAYEDIGLASP 292


>gi|86157157|ref|YP_463942.1| recombination factor protein RarA [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85773668|gb|ABC80505.1| Recombination protein MgsA [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 437

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 71/144 (49%), Gaps = 18/144 (12%)

Query: 22  LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPR LE+F GQ       + L+  IEA     + +  ++  GPPG GKTTLA++VA+  
Sbjct: 21  MRPRRLEDFAGQEHVLGPGTALRRSIEA-----DQVPSLILWGPPGTGKTTLARIVAQRT 75

Query: 79  GVNFRSTSGPVIAKAGDLAALLT-------NLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
           G +F   S  V+    ++  ++            R +LF+DEIHR +   ++   P +ED
Sbjct: 76  GADFVPFSA-VLGGVKEIREIVAAARDRRRMHRKRTILFVDEIHRFTRAQQDAFLPHVED 134

Query: 132 FQLDLM--VGEGPSARSVKINLSR 153
             + L+    E PS       LSR
Sbjct: 135 GTITLIGATTENPSFEVNAALLSR 158


>gi|89895174|ref|YP_518661.1| recombination factor protein RarA [Desulfitobacterium hafniense
           Y51]
 gi|89334622|dbj|BAE84217.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 440

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 71/145 (48%), Gaps = 12/145 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRTL+++ GQ E     K+   A +A  + +  ++  GPPG GKT+LAQV+A      
Sbjct: 23  MRPRTLDDYIGQSEIIGKGKLLRRAIEA--DRVTSLILYGPPGTGKTSLAQVIANTTSSG 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F   +  V A   ++  ++    +       + ++F DE+HR +   ++ L PA+E+  +
Sbjct: 81  FVRINA-VAAGVKEIREIIQTATEQLHLYGKKTLVFCDEVHRFNKGQQDALLPAVENGTI 139

Query: 135 DLM--VGEGPSARSVKINLSRFTLI 157
             +    E P        LSR TL 
Sbjct: 140 TFIGATTENPFFELNSALLSRSTLF 164


>gi|254181008|ref|ZP_04887606.1| ATPase, AAA family [Burkholderia pseudomallei 1655]
 gi|184211547|gb|EDU08590.1| ATPase, AAA family [Burkholderia pseudomallei 1655]
          Length = 436

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 81/326 (24%), Positives = 136/326 (41%), Gaps = 58/326 (17%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL +  GQ         L++  E+ K  +     ++  GPPG+GKTTLA++ A   
Sbjct: 17  LRPKTLADVIGQTHLLGEGKPLRLAFESGKPHS-----MILWGPPGVGKTTLARLTALAF 71

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V+    D+   +    D         +LF+DEIHR +   ++ L P +E 
Sbjct: 72  DCEFIALSA-VLGGVKDIREAMEQARDTLNRTGRHTILFVDEIHRFNKAQQDALLPFVES 130

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
             L   +G      S ++N    + + +  +V +L +  +D              +L+ +
Sbjct: 131 -GLVTFIGATTENPSFEVN----SALLSRAQVYVLKSLAED--------------ELRQL 171

Query: 192 VQRG--AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
           ++R     L GLA  D+A   +   + G  R    LL + +  A  A   TI     DAA
Sbjct: 172 LKRAQDVALGGLAFDDKAVDTLVGYADGDARRFLNLLEQAQTAASSAGVTTI-----DAA 226

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNF-GGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            +  A             +TM AR F  GG    + ISA     R +  D    ++ +  
Sbjct: 227 FVESA-------------MTMNARRFDKGGDNFYDQISALHKSVRGSSPDGALYWLCRML 273

Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIP 332
                P+   R ++ +AW+ +G+  P
Sbjct: 274 DGGADPKYLARRVVRMAWEDIGLADP 299


>gi|296103102|ref|YP_003613248.1| recombination factor protein RarA [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295057561|gb|ADF62299.1| recombination factor protein RarA [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 447

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 80/168 (47%), Gaps = 22/168 (13%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP  L ++ GQ   + A   L   IEA       L  ++  GPPG GKTTLA+V+AR  
Sbjct: 20  MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             +       TSG   I +A + A    N   R +LF+DE+HR +   ++   P +ED  
Sbjct: 75  NADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134

Query: 134 LDLMVGEGPSARSVKIN---LSR---FTLIAATTR--VGLLTNPLQDR 173
           +   +G      S ++N   LSR   + L + TT     +LT  + D+
Sbjct: 135 I-FFIGATTENPSFELNSALLSRARVYLLKSLTTEDIENVLTQAMDDK 181


>gi|253574915|ref|ZP_04852255.1| AAA ATPase central domain-containing protein [Paenibacillus sp.
           oral taxon 786 str. D14]
 gi|251845961|gb|EES73969.1| AAA ATPase central domain-containing protein [Paenibacillus sp.
           oral taxon 786 str. D14]
          Length = 452

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 60/116 (51%), Gaps = 10/116 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP +L+E+ GQ       K+   A +A  + +  +L  GPPG GKTTLA +++      
Sbjct: 36  MRPTSLDEYIGQEHIVGPGKLLRRAIEA--DQVSSILLYGPPGCGKTTLAHIISHHTKAE 93

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAME 130
           F   +  V A   D+  ++   ++       + +LF+DE+HR +   ++ L PA+E
Sbjct: 94  FVRLNA-VDASVKDVREVIEKAQNDKAFYGTKTILFLDEVHRFNSSRQDALLPAVE 148


>gi|320180609|gb|EFW55538.1| recombination factor protein RarA [Shigella boydii ATCC 9905]
          Length = 447

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP  L ++ GQ   + A   L   IEA       L  ++  GPPG GKTTLA+V+AR  
Sbjct: 20  MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             +       TSG   I +A + A    N   R +LF+DE+HR +   ++   P +ED  
Sbjct: 75  NADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134

Query: 134 LDLM--VGEGPS 143
           +  +    E PS
Sbjct: 135 ITFIGATTENPS 146


>gi|315619204|gb|EFU99783.1| ATPase family associated with various cellular activities (AAA)
           family protein [Escherichia coli 3431]
          Length = 428

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP  L ++ GQ   + A   L   IEA       L  ++  GPPG GKTTLA+V+AR  
Sbjct: 1   MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 55

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             +       TSG   I +A + A    N   R +LF+DE+HR +   ++   P +ED  
Sbjct: 56  NADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 115

Query: 134 LDLM--VGEGPS 143
           +  +    E PS
Sbjct: 116 ITFIGATTENPS 127


>gi|320175333|gb|EFW50439.1| recombination factor protein RarA [Shigella dysenteriae CDC
           74-1112]
          Length = 447

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP  L ++ GQ   + A   L   IEA       L  ++  GPPG GKTTLA+V+AR  
Sbjct: 20  MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             +       TSG   I +A + A    N   R +LF+DE+HR +   ++   P +ED  
Sbjct: 75  NADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134

Query: 134 LDLM--VGEGPS 143
           +  +    E PS
Sbjct: 135 ITFIGATTENPS 146


>gi|237730857|ref|ZP_04561338.1| recombination factor protein RarA [Citrobacter sp. 30_2]
 gi|226906396|gb|EEH92314.1| recombination factor protein RarA [Citrobacter sp. 30_2]
          Length = 447

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP  L ++ GQ   + A   L   IEA       L  ++  GPPG GKTTLA+V+AR  
Sbjct: 20  MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             +       TSG   I +A + A    N   R +LF+DE+HR +   ++   P +ED  
Sbjct: 75  NADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134

Query: 134 LDLM--VGEGPS 143
           +  +    E PS
Sbjct: 135 ITFIGATTENPS 146


>gi|209520410|ref|ZP_03269172.1| AAA ATPase central domain protein [Burkholderia sp. H160]
 gi|209499147|gb|EDZ99240.1| AAA ATPase central domain protein [Burkholderia sp. H160]
          Length = 437

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 125/290 (43%), Gaps = 46/290 (15%)

Query: 22  LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPR ++E  GQ         L+V  E+ KA +     ++  GPPG+GKTTLA+++A   
Sbjct: 15  LRPRNIDEVIGQTHLLGPNKPLRVAFESGKAHS-----MILWGPPGVGKTTLARLMADAF 69

Query: 79  GVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
              F + S  +     I +A + A +      + ++F+DE+HR +   ++   P +E   
Sbjct: 70  HAEFIALSAVLSGVKDIREAVETAQIHRANGHQTLVFVDEVHRFNKSQQDAFLPHVES-G 128

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           L + VG      S ++N                 + L  R  + +  +  + E  + + +
Sbjct: 129 LFVFVGATTENPSFEVN-----------------SALLSRAAVYVLKSLTDDEQRELLER 171

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
              +L GL  TDEA   +   + G  R   +LL  +   A  A A+  T EI D  LL  
Sbjct: 172 AQEELGGLTFTDEARAALIGSADGDGR---KLLNNLEIVARAA-ARQTTTEI-DGTLLGS 226

Query: 254 AI-------DKMG---FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
           A+       DK G   +DQ+   + ++   N  G       +  G ++PR
Sbjct: 227 ALAENLRRFDKGGDAFYDQISALHKSVRGSNPDGALYWFCRMLDGGADPR 276


>gi|90424905|ref|YP_533275.1| recombination factor protein RarA [Rhodopseudomonas palustris
           BisB18]
 gi|90106919|gb|ABD88956.1| Recombination protein MgsA [Rhodopseudomonas palustris BisB18]
          Length = 442

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 64/135 (47%), Gaps = 10/135 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPR LE+  GQ              + R   L  ++F GPPG GKTT+A+++A    ++
Sbjct: 30  LRPRALEDVVGQDHILGPDGALTRMLETRT--LGSLVFWGPPGTGKTTVARLLADTTELH 87

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F   S  V +   DL  +      R       +LF+DE+HR +   ++   P MED  + 
Sbjct: 88  FEQISA-VFSGVADLKKVFDAARARRQTGRGTLLFVDEVHRFNKAQQDSFLPVMEDGTV- 145

Query: 136 LMVGEGPSARSVKIN 150
           ++VG      S ++N
Sbjct: 146 VLVGATTENPSFELN 160


>gi|293433189|ref|ZP_06661617.1| replication-associated recombination protein A [Escherichia coli
           B088]
 gi|291324008|gb|EFE63430.1| replication-associated recombination protein A [Escherichia coli
           B088]
          Length = 447

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP  L ++ GQ   + A   L   IEA       L  ++  GPPG GKTTLA+V+AR  
Sbjct: 20  MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             +       TSG   I +A + A    N   R +LF+DE+HR +   ++   P +ED  
Sbjct: 75  NADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134

Query: 134 LDLM--VGEGPS 143
           +  +    E PS
Sbjct: 135 ITFIGATTENPS 146


>gi|188495408|ref|ZP_03002678.1| ATPase, AAA family [Escherichia coli 53638]
 gi|188490607|gb|EDU65710.1| ATPase, AAA family [Escherichia coli 53638]
          Length = 447

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP  L ++ GQ   + A   L   IEA       L  ++  GPPG GKTTLA+V+AR  
Sbjct: 20  MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             +       TSG   I +A + A    N   R +LF+DE+HR +   ++   P +ED  
Sbjct: 75  NADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134

Query: 134 LDLM--VGEGPS 143
           +  +    E PS
Sbjct: 135 ITFIGATTENPS 146


>gi|300926530|ref|ZP_07142319.1| replication-associated recombination protein A [Escherichia coli MS
           182-1]
 gi|301325785|ref|ZP_07219233.1| replication-associated recombination protein A [Escherichia coli MS
           78-1]
 gi|300417447|gb|EFK00758.1| replication-associated recombination protein A [Escherichia coli MS
           182-1]
 gi|300847428|gb|EFK75188.1| replication-associated recombination protein A [Escherichia coli MS
           78-1]
 gi|323175486|gb|EFZ61081.1| magnesium chelatase, subunit ChlI family protein [Escherichia coli
           1180]
          Length = 428

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP  L ++ GQ   + A   L   IEA       L  ++  GPPG GKTTLA+V+AR  
Sbjct: 1   MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 55

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             +       TSG   I +A + A    N   R +LF+DE+HR +   ++   P +ED  
Sbjct: 56  NADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 115

Query: 134 LDLM--VGEGPS 143
           +  +    E PS
Sbjct: 116 ITFIGATTENPS 127


>gi|157146420|ref|YP_001453739.1| recombination factor protein RarA [Citrobacter koseri ATCC BAA-895]
 gi|157083625|gb|ABV13303.1| hypothetical protein CKO_02179 [Citrobacter koseri ATCC BAA-895]
          Length = 428

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP  L ++ GQ   + A   L   IEA       L  ++  GPPG GKTTLA+V+AR  
Sbjct: 1   MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 55

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             +       TSG   I +A + A    N   R +LF+DE+HR +   ++   P +ED  
Sbjct: 56  NADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 115

Query: 134 LDLM--VGEGPS 143
           +  +    E PS
Sbjct: 116 ITFIGATTENPS 127


>gi|300823631|ref|ZP_07103758.1| replication-associated recombination protein A [Escherichia coli MS
           119-7]
 gi|300896501|ref|ZP_07115025.1| replication-associated recombination protein A [Escherichia coli MS
           198-1]
 gi|300902951|ref|ZP_07120895.1| replication-associated recombination protein A [Escherichia coli MS
           84-1]
 gi|300929585|ref|ZP_07145048.1| replication-associated recombination protein A [Escherichia coli MS
           187-1]
 gi|300949748|ref|ZP_07163725.1| replication-associated recombination protein A [Escherichia coli MS
           116-1]
 gi|300954715|ref|ZP_07167150.1| replication-associated recombination protein A [Escherichia coli MS
           175-1]
 gi|300978544|ref|ZP_07174297.1| replication-associated recombination protein A [Escherichia coli MS
           45-1]
 gi|300983197|ref|ZP_07176476.1| replication-associated recombination protein A [Escherichia coli MS
           200-1]
 gi|301047850|ref|ZP_07194900.1| replication-associated recombination protein A [Escherichia coli MS
           185-1]
 gi|301302501|ref|ZP_07208632.1| replication-associated recombination protein A [Escherichia coli MS
           124-1]
 gi|301646337|ref|ZP_07246225.1| replication-associated recombination protein A [Escherichia coli MS
           146-1]
 gi|300300278|gb|EFJ56663.1| replication-associated recombination protein A [Escherichia coli MS
           185-1]
 gi|300306961|gb|EFJ61481.1| replication-associated recombination protein A [Escherichia coli MS
           200-1]
 gi|300318326|gb|EFJ68110.1| replication-associated recombination protein A [Escherichia coli MS
           175-1]
 gi|300359650|gb|EFJ75520.1| replication-associated recombination protein A [Escherichia coli MS
           198-1]
 gi|300405012|gb|EFJ88550.1| replication-associated recombination protein A [Escherichia coli MS
           84-1]
 gi|300409623|gb|EFJ93161.1| replication-associated recombination protein A [Escherichia coli MS
           45-1]
 gi|300450862|gb|EFK14482.1| replication-associated recombination protein A [Escherichia coli MS
           116-1]
 gi|300462473|gb|EFK25966.1| replication-associated recombination protein A [Escherichia coli MS
           187-1]
 gi|300523831|gb|EFK44900.1| replication-associated recombination protein A [Escherichia coli MS
           119-7]
 gi|300842340|gb|EFK70100.1| replication-associated recombination protein A [Escherichia coli MS
           124-1]
 gi|301075440|gb|EFK90246.1| replication-associated recombination protein A [Escherichia coli MS
           146-1]
 gi|315257932|gb|EFU37900.1| replication-associated recombination protein A [Escherichia coli MS
           85-1]
 gi|315291251|gb|EFU50611.1| replication-associated recombination protein A [Escherichia coli MS
           153-1]
 gi|315296140|gb|EFU55449.1| replication-associated recombination protein A [Escherichia coli MS
           16-3]
 gi|323190714|gb|EFZ75983.1| ATPase family associated with various cellular activities family
           protein [Escherichia coli RN587/1]
 gi|324009813|gb|EGB79032.1| replication-associated recombination protein A [Escherichia coli MS
           57-2]
 gi|324012982|gb|EGB82201.1| replication-associated recombination protein A [Escherichia coli MS
           60-1]
 gi|324019017|gb|EGB88236.1| replication-associated recombination protein A [Escherichia coli MS
           117-3]
          Length = 428

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP  L ++ GQ   + A   L   IEA       L  ++  GPPG GKTTLA+V+AR  
Sbjct: 1   MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 55

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             +       TSG   I +A + A    N   R +LF+DE+HR +   ++   P +ED  
Sbjct: 56  NADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 115

Query: 134 LDLM--VGEGPS 143
           +  +    E PS
Sbjct: 116 ITFIGATTENPS 127


>gi|82543378|ref|YP_407325.1| recombination factor protein RarA [Shigella boydii Sb227]
 gi|81244789|gb|ABB65497.1| putative polynucleotide enzyme [Shigella boydii Sb227]
 gi|320183169|gb|EFW58027.1| recombination factor protein RarA [Shigella flexneri CDC 796-83]
 gi|332097125|gb|EGJ02108.1| ATPase family associated with various cellular activities family
           protein [Shigella boydii 3594-74]
          Length = 447

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP  L ++ GQ   + A   L   IEA       L  ++  GPPG GKTTLA+V+AR  
Sbjct: 20  MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             +       TSG   I +A + A    N   R +LF+DE+HR +   ++   P +ED  
Sbjct: 75  NADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134

Query: 134 LDLM--VGEGPS 143
           +  +    E PS
Sbjct: 135 ITFIGATTENPS 146


>gi|14714682|gb|AAH10482.1| Werner helicase interacting protein 1 [Mus musculus]
          Length = 660

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 75/151 (49%), Gaps = 21/151 (13%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75
           +RP TL+++ GQ  A      L+  +EA +     +  ++  GPPG GKTTLA ++A   
Sbjct: 226 MRPDTLQDYIGQSRAVGQETLLRSLLEANE-----IPSLILWGPPGCGKTTLAHIIANNS 280

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPA 128
           ++  + F + S    AK  D+  ++   ++       + +LFIDEIHR +   ++   P 
Sbjct: 281 KKHSIRFVTLSA-TNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPH 339

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLI 157
           +E   + L+    E PS +     LSR  +I
Sbjct: 340 VECGTITLIGATTENPSFQVNAALLSRCRVI 370


>gi|219669601|ref|YP_002460036.1| recombination factor protein RarA [Desulfitobacterium hafniense
           DCB-2]
 gi|219539861|gb|ACL21600.1| AAA ATPase central domain protein [Desulfitobacterium hafniense
           DCB-2]
          Length = 437

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 71/145 (48%), Gaps = 12/145 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRTL+++ GQ E     K+   A +A  + +  ++  GPPG GKT+LAQV+A      
Sbjct: 20  MRPRTLDDYIGQSEIIGKGKLLRRAIEA--DRVTSLILYGPPGTGKTSLAQVIANTTSSG 77

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F   +  V A   ++  ++    +       + ++F DE+HR +   ++ L PA+E+  +
Sbjct: 78  FVRINA-VAAGVKEIREIIQTATEQLHLYGKKTLVFCDEVHRFNKGQQDALLPAVENGTI 136

Query: 135 DLM--VGEGPSARSVKINLSRFTLI 157
             +    E P        LSR TL 
Sbjct: 137 TFIGATTENPFFELNSALLSRSTLF 161


>gi|323185143|gb|EFZ70508.1| ATPase family associated with various cellular activities family
           protein [Escherichia coli 1357]
          Length = 428

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP  L ++ GQ   + A   L   IEA       L  ++  GPPG GKTTLA+V+AR  
Sbjct: 1   MRPENLAQYIGQQHLLAAGKPLPHAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 55

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             +       TSG   I +A + A    N   R +LF+DE+HR +   ++   P +ED  
Sbjct: 56  NADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 115

Query: 134 LDLM--VGEGPS 143
           +  +    E PS
Sbjct: 116 ITFIGATTENPS 127


>gi|310643530|ref|YP_003948288.1| aaa atpase central domain-containing protein [Paenibacillus
           polymyxa SC2]
 gi|309248480|gb|ADO58047.1| AAA ATPase central domain-containing protein [Paenibacillus
           polymyxa SC2]
          Length = 436

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 62/116 (53%), Gaps = 10/116 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP +L+E+ GQ       K+   A +A  + +  +L  GPPG GKTTLA ++++    +
Sbjct: 21  LRPTSLDEYIGQEHVVGPGKLLRRAIEA--DQVSSILLYGPPGCGKTTLAHIISQHTQGD 78

Query: 82  FRSTSGPVIAKAGDLAALL----TNLE---DRDVLFIDEIHRLSIIVEEILYPAME 130
           F   +  V A   D+  ++    TN      + +LF+DE+HR +   ++ L PA+E
Sbjct: 79  FVRLNA-VEASVKDVREVIDRAQTNKSMYGKKTILFLDEVHRFNSSRQDALLPAVE 133


>gi|300817006|ref|ZP_07097225.1| replication-associated recombination protein A [Escherichia coli MS
           107-1]
 gi|301022877|ref|ZP_07186710.1| replication-associated recombination protein A [Escherichia coli MS
           69-1]
 gi|309795299|ref|ZP_07689717.1| replication-associated recombination protein A [Escherichia coli MS
           145-7]
 gi|300397339|gb|EFJ80877.1| replication-associated recombination protein A [Escherichia coli MS
           69-1]
 gi|300530358|gb|EFK51420.1| replication-associated recombination protein A [Escherichia coli MS
           107-1]
 gi|308120949|gb|EFO58211.1| replication-associated recombination protein A [Escherichia coli MS
           145-7]
 gi|332091064|gb|EGI96154.1| ATPase family associated with various cellular activities family
           protein [Shigella dysenteriae 155-74]
          Length = 428

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP  L ++ GQ   + A   L   IEA       L  ++  GPPG GKTTLA+V+AR  
Sbjct: 1   MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 55

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             +       TSG   I +A + A    N   R +LF+DE+HR +   ++   P +ED  
Sbjct: 56  NADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 115

Query: 134 LDLM--VGEGPS 143
           +  +    E PS
Sbjct: 116 ITFIGATTENPS 127


>gi|312114760|ref|YP_004012356.1| ATPase AAA [Rhodomicrobium vannielii ATCC 17100]
 gi|311219889|gb|ADP71257.1| AAA ATPase central domain protein [Rhodomicrobium vannielii ATCC
           17100]
          Length = 455

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 66/135 (48%), Gaps = 10/135 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP +L +  GQ             A    EA   ++F GPPG GKTT+A+++A+  G +
Sbjct: 37  LRPASLGDVIGQEHLLGEGGPLRRIADG--EAPRSMIFWGPPGTGKTTVARLMAKGAGAH 94

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F   S  + +   DL  +    +DR       +LF+DEIHR +   ++   P +ED  + 
Sbjct: 95  FEQISA-IFSGVADLRKVFDAAKDRQRFGQGTILFVDEIHRFNRSQQDSFLPFVEDGTI- 152

Query: 136 LMVGEGPSARSVKIN 150
           +++G      S ++N
Sbjct: 153 ILIGATTENPSFELN 167


>gi|255534679|ref|YP_003095050.1| ATPase, AAA family [Flavobacteriaceae bacterium 3519-10]
 gi|255340875|gb|ACU06988.1| ATPase, AAA family [Flavobacteriaceae bacterium 3519-10]
          Length = 442

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 73/141 (51%), Gaps = 12/141 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+TL+E  GQ E  +  K  +       + L+ ++F GPPG GKTT+A++++ + G  
Sbjct: 28  MRPKTLDEVRGQ-EHLTGEKGTVRKM-LENDTLNSLIFWGPPGTGKTTIAEIISEQSGRK 85

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F   S  V +   D+  ++   + ++       +LFIDEIHR +   ++ L  A+E   +
Sbjct: 86  FFKLSA-VSSGVKDVREVIEEAKKQNLFSGKSPILFIDEIHRFNKSQQDSLLHAVEKGWI 144

Query: 135 DLM--VGEGPSARSVKINLSR 153
            L+    E PS   V   LSR
Sbjct: 145 VLIGATTENPSFEVVSALLSR 165


>gi|197121182|ref|YP_002133133.1| recombination factor protein RarA [Anaeromyxobacter sp. K]
 gi|196171031|gb|ACG72004.1| AAA ATPase central domain protein [Anaeromyxobacter sp. K]
          Length = 437

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 68/134 (50%), Gaps = 18/134 (13%)

Query: 22  LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPR LE+F GQ       + L+  IEA     + +  ++  GPPG GKTTLA++VA+  
Sbjct: 21  MRPRRLEDFAGQEHVLGPGTALRRSIEA-----DQVPSLILWGPPGTGKTTLARIVAQRT 75

Query: 79  GVNFRSTSGPVIAKAGDLAALLT-------NLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
           G +F   S  V+    ++  ++            R +LF+DEIHR +   ++   P +ED
Sbjct: 76  GADFVPFSA-VLGGVKEIREIVAAARDRRRMHRKRTILFVDEIHRFTRAQQDAFLPHVED 134

Query: 132 FQLDLM--VGEGPS 143
             + L+    E PS
Sbjct: 135 GTITLIGATTENPS 148


>gi|47086195|ref|NP_998085.1| ATPase WRNIP1 [Danio rerio]
 gi|45709587|gb|AAH67729.1| Zgc:85976 [Danio rerio]
          Length = 546

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 71/149 (47%), Gaps = 14/149 (9%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA---RE 77
           LLRP TLEE+ GQ +      +     K+  + +  ++  GPPG GKTTLA ++A   ++
Sbjct: 120 LLRPSTLEEYFGQNKLIGEQTLLRSLLKS--QEIPSLILWGPPGCGKTTLAHIIASSIKQ 177

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAME 130
            G     T     A   D+  ++   ++       + VLFIDEIHR +   ++   P +E
Sbjct: 178 KGTGRFVTLSATSASVSDVREVIKQAQNELRLCKRKTVLFIDEIHRFNKSQQDTFLPHVE 237

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLI 157
              + L+    E PS +     LSR  ++
Sbjct: 238 CGTITLIGATTENPSFQVNSALLSRCRVL 266


>gi|53720212|ref|YP_109198.1| recombination factor protein RarA [Burkholderia pseudomallei
           K96243]
 gi|53725979|ref|YP_103691.1| recombination factor protein RarA [Burkholderia mallei ATCC 23344]
 gi|52210626|emb|CAH36610.1| putative ATPase protein [Burkholderia pseudomallei K96243]
 gi|52429402|gb|AAU49995.1| ATPase, AAA family protein [Burkholderia mallei ATCC 23344]
          Length = 455

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 81/326 (24%), Positives = 136/326 (41%), Gaps = 58/326 (17%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL +  GQ         L++  E+ K  +     ++  GPPG+GKTTLA++ A   
Sbjct: 36  LRPKTLADVIGQTHLLGEGKPLRLAFESGKPHS-----MILWGPPGVGKTTLARLTALAF 90

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V+    D+   +    D         +LF+DEIHR +   ++ L P +E 
Sbjct: 91  DCEFIALSA-VLGGVKDIREAMEQARDTLNRTGRHTILFVDEIHRFNKAQQDALLPFVES 149

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
             L   +G      S ++N    + + +  +V +L +  +D              +L+ +
Sbjct: 150 -GLVTFIGATTENPSFEVN----SALLSRAQVYVLKSLAED--------------ELRQL 190

Query: 192 VQRG--AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
           ++R     L GLA  D+A   +   + G  R    LL + +  A  A   TI     DAA
Sbjct: 191 LKRAQDVALGGLAFDDKAVDTLVGYADGDARRFLNLLEQAQTAASSAGVTTI-----DAA 245

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNF-GGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            +  A             +TM AR F  GG    + ISA     R +  D    ++ +  
Sbjct: 246 FVESA-------------MTMNARRFDKGGDNFYDQISALHKSVRGSSPDGALYWLCRML 292

Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIP 332
                P+   R ++ +AW+ +G+  P
Sbjct: 293 DGGADPKYLARRVVRMAWEDIGLADP 318


>gi|187733902|ref|YP_001880910.1| recombination factor protein RarA [Shigella boydii CDC 3083-94]
 gi|187430894|gb|ACD10168.1| putative DNA recombination-associated ATPase RarA [Shigella boydii
           CDC 3083-94]
          Length = 447

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP  L ++ GQ   + A   L   IEA       L  ++  GPPG GKTTLA+V+AR  
Sbjct: 20  MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             +       TSG   I +A + A    N   R +LF+DE+HR +   ++   P +ED  
Sbjct: 75  NADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134

Query: 134 LDLM--VGEGPS 143
           +  +    E PS
Sbjct: 135 ITFIGATTENPS 146


>gi|322616394|gb|EFY13303.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322619644|gb|EFY16519.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322622660|gb|EFY19505.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322628573|gb|EFY25360.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322634946|gb|EFY31675.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322637036|gb|EFY33739.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322641603|gb|EFY38240.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322644442|gb|EFY40982.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322649588|gb|EFY46019.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322654110|gb|EFY50433.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322659225|gb|EFY55474.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322663499|gb|EFY59701.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322670235|gb|EFY66375.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322671471|gb|EFY67593.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322676827|gb|EFY72894.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322682752|gb|EFY78771.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322686431|gb|EFY82413.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323191717|gb|EFZ76971.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323199758|gb|EFZ84847.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323202197|gb|EFZ87251.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323209022|gb|EFZ93959.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323210414|gb|EFZ95303.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323222450|gb|EGA06824.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323226865|gb|EGA11048.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323229819|gb|EGA13942.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323233044|gb|EGA17140.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323240779|gb|EGA24821.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323243096|gb|EGA27116.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323247418|gb|EGA31374.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323250912|gb|EGA34789.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323256445|gb|EGA40179.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323263111|gb|EGA46653.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323267977|gb|EGA51456.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323270717|gb|EGA54157.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 447

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP  L ++ GQ   + A   L   IEA       L  ++  GPPG GKTTLA+V+AR  
Sbjct: 20  MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             +       TSG   I +A + A    N   R +LF+DE+HR +   ++   P +ED  
Sbjct: 75  SADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134

Query: 134 LDLM--VGEGPS 143
           +  +    E PS
Sbjct: 135 ITFIGATTENPS 146


>gi|308070341|ref|YP_003871946.1| hypothetical protein PPE_03591 [Paenibacillus polymyxa E681]
 gi|305859620|gb|ADM71408.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
          Length = 436

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 62/116 (53%), Gaps = 10/116 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP +L+E+ GQ       K+   A +A  + +  +L  GPPG GKTTLA ++++    +
Sbjct: 21  LRPTSLDEYIGQEHVVGPGKLLRRAIEA--DQVSSILLYGPPGCGKTTLAHIISQHTQGD 78

Query: 82  FRSTSGPVIAKAGDLAALL----TNLE---DRDVLFIDEIHRLSIIVEEILYPAME 130
           F   +  V A   D+  ++    TN      + +LF+DE+HR +   ++ L PA+E
Sbjct: 79  FVRLNA-VEASVKDVREVIDRAQTNKSMYGKKTILFLDEVHRFNSSRQDALLPAVE 133


>gi|254470398|ref|ZP_05083802.1| ATPase, AAA family protein [Pseudovibrio sp. JE062]
 gi|211960709|gb|EEA95905.1| ATPase, AAA family protein [Pseudovibrio sp. JE062]
          Length = 436

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 62/130 (47%), Gaps = 11/130 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR LE+  GQ        +   +   R+ +L  ++F GPPG GKTT+A+++A    + 
Sbjct: 22  MRPRVLEDVVGQGHLLGEDGIL--SRMLRSGSLGSLIFWGPPGTGKTTVARLLADATDLE 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDV------LFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F   S  + +   DL       + R +      LF+DEIHR +    +   P MED  + 
Sbjct: 80  FEQISA-IFSGVADLKKCFERAKGRRISSKRTLLFVDEIHRFNRAQLDSFLPVMEDGTIT 138

Query: 136 LM--VGEGPS 143
           L+    E PS
Sbjct: 139 LVGATTENPS 148


>gi|296126532|ref|YP_003633784.1| ATPase AAA [Brachyspira murdochii DSM 12563]
 gi|296018348|gb|ADG71585.1| AAA ATPase central domain protein [Brachyspira murdochii DSM 12563]
          Length = 435

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 117/273 (42%), Gaps = 55/273 (20%)

Query: 22  LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP ++EE  GQ         L+  I+  K     +  ++F GPPG+GK+T+A ++A++ 
Sbjct: 22  MRPLSIEEVFGQKHILGKDKTLRKMIDNDK-----ITSMVFFGPPGVGKSTVASIIAKKT 76

Query: 79  GVNFRSTSGPVIAKAGDLAALL----TNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDF 132
              +   +  V++   ++   +     NLE+R   +LFIDEIHR +   ++ L PA+E+ 
Sbjct: 77  KSEYIKLNA-VLSNVSEIREAIKKAEKNLENRKKTILFIDEIHRFNKSQQDALLPAVENG 135

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTR--VGLLTNPLQDRFGIPIRLNFYEIED--- 187
            +                     LI +TT+     L N L  R  +     F  ++D   
Sbjct: 136 SV--------------------ILIGSTTQNPYFYLNNALLSRIML---FEFRNLDDNDI 172

Query: 188 ----LKTIV-QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK--- 239
               LK I  +RG     +AV D A   I   S G  R A   L       ++   K   
Sbjct: 173 REALLKAITDKRGLGEDDVAVEDGAVSLIVRYSHGDVRKAFTYLEASYLATQIDETKEKL 232

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIA 272
           TIT EI      + +   M FD+ D  Y T+ A
Sbjct: 233 TITEEIVKDVTSKQS---MTFDE-DEHYNTISA 261


>gi|126434949|ref|YP_001070640.1| recombination factor protein RarA [Mycobacterium sp. JLS]
 gi|126234749|gb|ABN98149.1| Recombination protein MgsA [Mycobacterium sp. JLS]
          Length = 445

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 75/144 (52%), Gaps = 19/144 (13%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP +L+E  GQ   ++  S L+  +E + A +     V+  GPPG GKTTLA +++   
Sbjct: 29  MRPASLDEVVGQQHLLKPNSPLRRLVEGSGAAS-----VILYGPPGTGKTTLASLISHAT 83

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           G  F + S  + A   ++ A++           + VLFIDE+HR S   ++ L  A+E+ 
Sbjct: 84  GRRFEALSA-LSAGVKEVRAVIETARQGILRGQQTVLFIDEVHRFSKTQQDALLAAVEN- 141

Query: 133 QLDLMVG---EGPSARSVKINLSR 153
           ++ L+V    E PS   V   LSR
Sbjct: 142 RIVLLVAATTENPSFSVVAPLLSR 165


>gi|325915378|ref|ZP_08177695.1| Recombination protein MgsA [Xanthomonas vesicatoria ATCC 35937]
 gi|325538425|gb|EGD10104.1| Recombination protein MgsA [Xanthomonas vesicatoria ATCC 35937]
          Length = 457

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 16/138 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL+E  GQ   +   S L+  +E+ +  +     ++  GPPG GKTTLA ++A   
Sbjct: 29  MRPRTLDEMVGQKRLLTPDSALRRAVESGRVHS-----MILWGPPGCGKTTLALLLAHYA 83

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDF 132
              F++ S  V++   D+  +L           R VLF+DE+HR +   ++   P +E  
Sbjct: 84  DAEFKAISA-VLSGLPDVRQVLAEAAQRFASGRRTVLFVDEVHRFNKAQQDAFLPHIERG 142

Query: 133 QLDLMVGEGPSARSVKIN 150
            + L VG      S ++N
Sbjct: 143 TI-LFVGATTENPSFELN 159


>gi|323967139|gb|EGB62563.1| ATPase [Escherichia coli M863]
 gi|327253680|gb|EGE65309.1| ATPase family associated with various cellular activities family
           protein [Escherichia coli STEC_7v]
          Length = 447

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP  L ++ GQ   + A   L   IEA       L  ++  GPPG GKTTLA+V+AR  
Sbjct: 20  MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             +       TSG   I +A + A    N   R +LF+DE+HR +   ++   P +ED  
Sbjct: 75  NADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134

Query: 134 LDLM--VGEGPS 143
           +  +    E PS
Sbjct: 135 ITFIGATTENPS 146


>gi|16759833|ref|NP_455450.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|16764323|ref|NP_459938.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|29142394|ref|NP_805736.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|56413986|ref|YP_151061.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|161614808|ref|YP_001588773.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167994703|ref|ZP_02575794.1| ATPase, AAA family [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168230855|ref|ZP_02655913.1| putative DNA recombination-associated ATPase RarA [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|168240812|ref|ZP_02665744.1| ATPase, AAA family [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|168263552|ref|ZP_02685525.1| ATPase, AAA family [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|168466546|ref|ZP_02700408.1| putative DNA recombination-associated ATPase RarA [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|168822938|ref|ZP_02834938.1| putative DNA recombination-associated ATPase RarA [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|194446297|ref|YP_002040161.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194447715|ref|YP_002044955.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194471144|ref|ZP_03077128.1| putative DNA recombination-associated ATPase RarA [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|197263317|ref|ZP_03163391.1| ATPase, AAA family [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197362909|ref|YP_002142546.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|200391027|ref|ZP_03217638.1| ATPase, AAA family [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|213428592|ref|ZP_03361342.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213851471|ref|ZP_03381369.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|238913263|ref|ZP_04657100.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|289830103|ref|ZP_06547534.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|25329900|pir||AH0611 conserevd hypothetical protein STY0960 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16419474|gb|AAL19897.1| putative polynucleotide enzyme [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|16502126|emb|CAD05362.1| conserevd hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29138024|gb|AAO69585.1| conserevd hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56128243|gb|AAV77749.1| conserevd hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|161364172|gb|ABX67940.1| hypothetical protein SPAB_02560 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194404960|gb|ACF65182.1| putative DNA recombination-associated ATPase RarA [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194406019|gb|ACF66238.1| ATPase, AAA family [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194457508|gb|EDX46347.1| putative DNA recombination-associated ATPase RarA [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|195630930|gb|EDX49516.1| putative DNA recombination-associated ATPase RarA [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|197094386|emb|CAR59901.1| conserevd hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197241572|gb|EDY24192.1| ATPase, AAA family [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|199603472|gb|EDZ02018.1| ATPase, AAA family [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|205327462|gb|EDZ14226.1| ATPase, AAA family [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205334719|gb|EDZ21483.1| putative DNA recombination-associated ATPase RarA [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|205339853|gb|EDZ26617.1| ATPase, AAA family [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|205340727|gb|EDZ27491.1| putative DNA recombination-associated ATPase RarA [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|205347729|gb|EDZ34360.1| ATPase, AAA family [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|261246179|emb|CBG23983.1| conserevd hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267992695|gb|ACY87580.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301157506|emb|CBW16996.1| conserevd hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312911950|dbj|BAJ35924.1| recombination protein RarA [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|320085199|emb|CBY94985.1| ATPase WRNIP1 Werner helicase-interacting protein 1 [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
 gi|321223286|gb|EFX48355.1| ATPase, AAA family [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|323129228|gb|ADX16658.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332987854|gb|AEF06837.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 447

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP  L ++ GQ   + A   L   IEA       L  ++  GPPG GKTTLA+V+AR  
Sbjct: 20  MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             +       TSG   I +A + A    N   R +LF+DE+HR +   ++   P +ED  
Sbjct: 75  SADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134

Query: 134 LDLM--VGEGPS 143
           +  +    E PS
Sbjct: 135 ITFIGATTENPS 146


>gi|193064678|ref|ZP_03045757.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           E22]
 gi|194428364|ref|ZP_03060905.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           B171]
 gi|218553478|ref|YP_002386391.1| recombination factor protein RarA [Escherichia coli IAI1]
 gi|260843142|ref|YP_003220920.1| recombination protein [Escherichia coli O103:H2 str. 12009]
 gi|192927735|gb|EDV82350.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           E22]
 gi|194413579|gb|EDX29860.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           B171]
 gi|218360246|emb|CAQ97796.1| recombination protein [Escherichia coli IAI1]
 gi|257758289|dbj|BAI29786.1| recombination protein [Escherichia coli O103:H2 str. 12009]
 gi|323159517|gb|EFZ45497.1| ATPase family associated with various cellular activities family
           protein [Escherichia coli E128010]
 gi|323947319|gb|EGB43327.1| ATPase [Escherichia coli H120]
 gi|324116105|gb|EGC10029.1| ATPase [Escherichia coli E1167]
 gi|332088848|gb|EGI93960.1| ATPase family associated with various cellular activities family
           protein [Shigella boydii 5216-82]
          Length = 447

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP  L ++ GQ   + A   L   IEA       L  ++  GPPG GKTTLA+V+AR  
Sbjct: 20  MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             +       TSG   I +A + A    N   R +LF+DE+HR +   ++   P +ED  
Sbjct: 75  NADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134

Query: 134 LDLM--VGEGPS 143
           +  +    E PS
Sbjct: 135 ITFIGATTENPS 146


>gi|167383505|ref|XP_001736558.1| replication factor C small subunit [Entamoeba dispar SAW760]
 gi|165900974|gb|EDR27174.1| replication factor C small subunit, putative [Entamoeba dispar
           SAW760]
          Length = 610

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 103/243 (42%), Gaps = 26/243 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+ LEE  GQ +  +    F      + + +   +  GPPG GKTT+A ++       F
Sbjct: 50  RPKNLEEIIGQEDVLAIGTPF--NTMIKNDKIQSTILYGPPGCGKTTIAGIIKNNSKSTF 107

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
            S S    +K  D   +L + + R       +LF+DEIH L+ + ++   PA+E   + +
Sbjct: 108 VSMSA-ATSKKEDFKKVLNDAKHRKRLGMNTILFLDEIHSLNRLQQDTFLPAIESGTI-I 165

Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLT-NPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           ++G      S ++N       A  +R  L+T   L D   + I         L+  +   
Sbjct: 166 LIGATTENPSFELNN------ALMSRCQLVTLKKLTDENVVKI---------LRKAIDEE 210

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255
              + + + +E    IA  S G  R A   L +V     + + K +  EI +   + + +
Sbjct: 211 YYYSKIDIDNEGLHFIAAISDGDARNALNTLEKVFVHYNLMNEKVLKNEINEKGGIDIEV 270

Query: 256 DKM 258
            ++
Sbjct: 271 KEL 273


>gi|161503912|ref|YP_001571024.1| recombination factor protein RarA [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160865259|gb|ABX21882.1| hypothetical protein SARI_02002 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 428

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP  L ++ GQ   + A   L   IEA       L  ++  GPPG GKTTLA+V+AR  
Sbjct: 1   MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 55

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             +       TSG   I +A + A    N   R +LF+DE+HR +   ++   P +ED  
Sbjct: 56  SADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 115

Query: 134 LDLM--VGEGPS 143
           +  +    E PS
Sbjct: 116 ITFIGATTENPS 127


>gi|37589162|gb|AAH58744.1| Wrnip1 protein [Mus musculus]
          Length = 526

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 75/151 (49%), Gaps = 21/151 (13%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75
           +RP TL+++ GQ  A      L+  +EA +     +  ++  GPPG GKTTLA ++A   
Sbjct: 92  MRPDTLQDYIGQSRAVGQETLLRSLLEANE-----IPSLILWGPPGCGKTTLAHIIANNS 146

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPA 128
           ++  + F + S    AK  D+  ++   ++       + +LFIDEIHR +   ++   P 
Sbjct: 147 KKHSIRFVTLSA-TNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPH 205

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLI 157
           +E   + L+    E PS +     LSR  +I
Sbjct: 206 VECGTITLIGATTENPSFQVNAALLSRCRVI 236


>gi|62179486|ref|YP_215903.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|198244942|ref|YP_002214886.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|205352170|ref|YP_002225971.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207856354|ref|YP_002243005.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224582772|ref|YP_002636570.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|62127119|gb|AAX64822.1| paral putative polynucleotide enzyme [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|197939458|gb|ACH76791.1| putative DNA recombination-associated ATPase RarA [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|205271951|emb|CAR36795.1| conserevd hypothetical protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|206708157|emb|CAR32450.1| conserevd hypothetical protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|224467299|gb|ACN45129.1| conserevd hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|322713955|gb|EFZ05526.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
 gi|326622639|gb|EGE28984.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
 gi|326627214|gb|EGE33557.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 447

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP  L ++ GQ   + A   L   IEA       L  ++  GPPG GKTTLA+V+AR  
Sbjct: 20  MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             +       TSG   I +A + A    N   R +LF+DE+HR +   ++   P +ED  
Sbjct: 75  SADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134

Query: 134 LDLM--VGEGPS 143
           +  +    E PS
Sbjct: 135 ITFIGATTENPS 146


>gi|323691840|ref|ZP_08106096.1| AAA ATPase central domain-containing protein [Clostridium symbiosum
           WAL-14673]
 gi|323504122|gb|EGB19928.1| AAA ATPase central domain-containing protein [Clostridium symbiosum
           WAL-14673]
          Length = 444

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 75/156 (48%), Gaps = 11/156 (7%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MMD+  L   N        S +RP TL+ F GQ       KV     +   + +  ++F 
Sbjct: 1   MMDQLSLFD-NRETTSPLASRIRPDTLDGFVGQKHLIGEGKVLRNLIEK--DQVTSMIFW 57

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEI 114
           GPPG+GKTTLA+++A +   +F   S  V +   ++  ++   E       R +LF+DEI
Sbjct: 58  GPPGVGKTTLARIIAGKTRSSFIDFSA-VTSGIKEIKTVMEQAEKNRSMGIRTILFVDEI 116

Query: 115 HRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN 150
           HR +   ++   P +E   + +++G      S +IN
Sbjct: 117 HRFNKAQQDAFLPYVEKGSI-ILIGATTENPSFEIN 151


>gi|228923151|ref|ZP_04086442.1| hypothetical protein bthur0011_41310 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228836530|gb|EEM81880.1| hypothetical protein bthur0011_41310 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 476

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 88/350 (25%), Positives = 138/350 (39%), Gaps = 65/350 (18%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           ++R+ +L   V  +      +RP  ++E  GQ       K+     +A       ++  G
Sbjct: 37  IERDYILRETVQMKQPLAHRMRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYG 94

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSI 119
           PPG GKT++A  +A   G  FR  +  V     D+  ++    +    VL +DE+HRL  
Sbjct: 95  PPGTGKTSIASAIAGSTGTPFRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDK 153

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPI 178
             ++ L P +E   L                    TLI ATT     +NP       I  
Sbjct: 154 AKQDFLLPHLESGLL--------------------TLIGATT-----SNPFHAINSAIRS 188

Query: 179 RLNFYEI----ED-----LKTIVQRGAKLTG---LAVTDEAACEIAMRSRGTPRIAGRLL 226
           R   +E+    ED     LK  ++   K  G   + VTD+A    A  S G  R A   L
Sbjct: 189 RCQIFELHALTEDDILIGLKRALEDKEKGLGEYAVTVTDDALHHFANASGGDMRSAYNAL 248

Query: 227 RR--VRDFAEVAHAKTITREIADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGI 282
               +  F     A  IT EIA+  L + +   DK G    D+  L+   ++  G  V  
Sbjct: 249 ELAVLSSFTTDDQAAEITLEIAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDVNA 306

Query: 283 ETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
                       A+  L    +I+ G +Q    GR L+ +A++ +G+  P
Sbjct: 307 ------------ALHYLAR--LIEAGDLQSI--GRRLLIMAYEDIGLASP 340


>gi|208779605|ref|ZP_03246950.1| ATPase, AAA family protein [Francisella novicida FTG]
 gi|208744566|gb|EDZ90865.1| ATPase, AAA family protein [Francisella novicida FTG]
          Length = 412

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 77/149 (51%), Gaps = 15/149 (10%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP++++E  GQ    S   +  +      + +  ++  G PG+GKT+LA+++A    + 
Sbjct: 10  IRPQSIDEIVGQEHLLSQHGILTKILAG--DGICSLVLCGKPGVGKTSLARIIASSKKLE 67

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137
           F   S  V +   D+  L+T+ +  D  VLF+DEIHR +   ++IL P +E  ++ L+  
Sbjct: 68  FFELSA-VDSGVKDIKKLITDNQHLDSFVLFLDEIHRFNKSQQDILLPYIESGKIILIGA 126

Query: 138 VGEGPS--------ARSVKINLSRFTLIA 158
             E P+        +R   + L R +L+A
Sbjct: 127 TTENPTYYLNDALVSRLFILRLKRLSLVA 155


>gi|108799292|ref|YP_639489.1| recombination factor protein RarA [Mycobacterium sp. MCS]
 gi|119868408|ref|YP_938360.1| recombination factor protein RarA [Mycobacterium sp. KMS]
 gi|108769711|gb|ABG08433.1| Recombination protein MgsA [Mycobacterium sp. MCS]
 gi|119694497|gb|ABL91570.1| Recombination protein MgsA [Mycobacterium sp. KMS]
          Length = 445

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 75/144 (52%), Gaps = 19/144 (13%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP +L+E  GQ   ++  S L+  +E + A +     V+  GPPG GKTTLA +++   
Sbjct: 29  MRPASLDEVVGQQHLLKPNSPLRRLVEGSGAAS-----VILYGPPGTGKTTLASLISHAT 83

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           G  F + S  + A   ++ A++           + VLFIDE+HR S   ++ L  A+E+ 
Sbjct: 84  GRRFEALSA-LSAGVKEVRAVIETARQGILRGQQTVLFIDEVHRFSKTQQDALLAAVEN- 141

Query: 133 QLDLMVG---EGPSARSVKINLSR 153
           ++ L+V    E PS   V   LSR
Sbjct: 142 RIVLLVAATTENPSFSVVAPLLSR 165


>gi|254540120|ref|NP_084491.3| ATPase WRNIP1 [Mus musculus]
 gi|73622086|sp|Q91XU0|WRIP1_MOUSE RecName: Full=ATPase WRNIP1; AltName: Full=Werner
           helicase-interacting protein 1
 gi|26334781|dbj|BAC31091.1| unnamed protein product [Mus musculus]
 gi|56206896|emb|CAI25647.1| Werner helicase interacting protein 1 [Mus musculus]
 gi|74195651|dbj|BAE39633.1| unnamed protein product [Mus musculus]
 gi|74215304|dbj|BAE41868.1| unnamed protein product [Mus musculus]
 gi|74221135|dbj|BAE42069.1| unnamed protein product [Mus musculus]
 gi|148700413|gb|EDL32360.1| Werner helicase interacting protein 1, isoform CRA_c [Mus musculus]
          Length = 660

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 75/151 (49%), Gaps = 21/151 (13%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75
           +RP TL+++ GQ  A      L+  +EA +     +  ++  GPPG GKTTLA ++A   
Sbjct: 226 MRPDTLQDYIGQSRAVGQETLLRSLLEANE-----IPSLILWGPPGCGKTTLAHIIANNS 280

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPA 128
           ++  + F + S    AK  D+  ++   ++       + +LFIDEIHR +   ++   P 
Sbjct: 281 KKHSIRFVTLSA-TNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPH 339

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLI 157
           +E   + L+    E PS +     LSR  +I
Sbjct: 340 VECGTITLIGATTENPSFQVNAALLSRCRVI 370


>gi|323484771|ref|ZP_08090128.1| hypothetical protein HMPREF9474_01879 [Clostridium symbiosum
           WAL-14163]
 gi|323401877|gb|EGA94218.1| hypothetical protein HMPREF9474_01879 [Clostridium symbiosum
           WAL-14163]
          Length = 444

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 75/156 (48%), Gaps = 11/156 (7%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MMD+  L   N        S +RP TL+ F GQ       KV     +   + +  ++F 
Sbjct: 1   MMDQLSLFD-NRETTSPLASRIRPDTLDGFVGQKHLIGEGKVLRNLIEK--DQVTSMIFW 57

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEI 114
           GPPG+GKTTLA+++A +   +F   S  V +   ++  ++   E       R +LF+DEI
Sbjct: 58  GPPGVGKTTLARIIAGKTRSSFIDFSA-VTSGIKEIKTVMEQAEKNRSMGIRTILFVDEI 116

Query: 115 HRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN 150
           HR +   ++   P +E   + +++G      S +IN
Sbjct: 117 HRFNKAQQDAFLPYVEKGSI-ILIGATTENPSFEIN 151


>gi|283784714|ref|YP_003364579.1| ATPase [Citrobacter rodentium ICC168]
 gi|282948168|emb|CBG87735.1| putative ATPase [Citrobacter rodentium ICC168]
          Length = 447

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP  L ++ GQ   + A   L   IEA       L  ++  GPPG GKTTLA+V+AR  
Sbjct: 20  MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             +       TSG   I +A + A    N   R +LF+DE+HR +   ++   P +ED  
Sbjct: 75  NADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134

Query: 134 LDLM--VGEGPS 143
           +  +    E PS
Sbjct: 135 ITFIGATTENPS 146


>gi|194435164|ref|ZP_03067397.1| putative DNA recombination-associated ATPase RarA [Shigella
           dysenteriae 1012]
 gi|194416602|gb|EDX32738.1| putative DNA recombination-associated ATPase RarA [Shigella
           dysenteriae 1012]
          Length = 447

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP  L ++ GQ   + A   L   IEA       L  ++  GPPG GKTTLA+V+AR  
Sbjct: 20  MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             +       TSG   I +A + A    N   R +LF+DE+HR +   ++   P +ED  
Sbjct: 75  NADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134

Query: 134 LDLM--VGEGPS 143
           +  +    E PS
Sbjct: 135 ITFIGATTENPS 146


>gi|204930075|ref|ZP_03221096.1| AAA ATPase, central domain protein [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|204321069|gb|EDZ06270.1| AAA ATPase, central domain protein [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
          Length = 447

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP  L ++ GQ   + A   L   IEA       L  ++  GPPG GKTTLA+V+AR  
Sbjct: 20  MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             +       TSG   I +A + A    N   R +LF+DE+HR +   ++   P +ED  
Sbjct: 75  SADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134

Query: 134 LDLM--VGEGPS 143
           +  +    E PS
Sbjct: 135 ITFIGATTENPS 146


>gi|163760830|ref|ZP_02167909.1| hypothetical protein HPDFL43_06787 [Hoeflea phototrophica DFL-43]
 gi|162281874|gb|EDQ32166.1| hypothetical protein HPDFL43_06787 [Hoeflea phototrophica DFL-43]
          Length = 436

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 67/138 (48%), Gaps = 16/138 (11%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKAR---AEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP TL E TGQ           + A  R   + +L  ++F GPPG GKTT+A+++A E 
Sbjct: 21  LRPATLAEVTGQPHLTGP-----DGAITRMIASGSLGSMIFWGPPGTGKTTVARLLAGET 75

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDF 132
            + F   S  + +   DL  +      R       +LF+DEIHR +   ++   P MED 
Sbjct: 76  DLAFDQISA-IFSGVADLKKVFETARARRMGGRQTLLFVDEIHRFNRAQQDSFLPVMEDG 134

Query: 133 QLDLMVGEGPSARSVKIN 150
            + ++VG      S ++N
Sbjct: 135 TI-VLVGATTENPSFELN 151


>gi|127512950|ref|YP_001094147.1| recombination factor protein RarA [Shewanella loihica PV-4]
 gi|126638245|gb|ABO23888.1| AAA ATPase, central domain protein [Shewanella loihica PV-4]
          Length = 443

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 101/218 (46%), Gaps = 24/218 (11%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKA-RAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           +RP TL ++ GQ       K   +A +A RA ++   +F GPPG GKTTLA++VA     
Sbjct: 19  MRPETLSQYIGQDHLLGEGKPLRQALEAGRAHSM---MFWGPPGTGKTTLAELVAHYANA 75

Query: 81  NFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +    S  V +   ++ A + + +        R +LF+DE+HR +   ++   P +ED  
Sbjct: 76  HVERISA-VTSGVKEIRAAIEHAKSVAQSRGQRTLLFVDEVHRFNKSQQDAFLPFIEDGT 134

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           + + +G      S +IN      + +  RV L+   LQD   I I      +ED     +
Sbjct: 135 V-IFIGATTENPSFEIN----NALLSRARVYLIKR-LQDEEIIKIVRQ--ALED----GE 182

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
           RG     L + +E A ++A    G  R A  L+  + D
Sbjct: 183 RGLGKRQLKMPNEVAGKLASLCDGDARKALNLIELMSD 220


>gi|74311450|ref|YP_309869.1| recombination factor protein RarA [Shigella sonnei Ss046]
 gi|157159331|ref|YP_001462090.1| recombination factor protein RarA [Escherichia coli E24377A]
 gi|218694365|ref|YP_002402032.1| recombination factor protein RarA [Escherichia coli 55989]
 gi|260854183|ref|YP_003228074.1| recombination protein [Escherichia coli O26:H11 str. 11368]
 gi|260867064|ref|YP_003233466.1| recombination protein [Escherichia coli O111:H- str. 11128]
 gi|307311721|ref|ZP_07591361.1| AAA ATPase central domain protein [Escherichia coli W]
 gi|73854927|gb|AAZ87634.1| putative polynucleotide enzyme [Shigella sonnei Ss046]
 gi|157081361|gb|ABV21069.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           E24377A]
 gi|218351097|emb|CAU96801.1| recombination protein [Escherichia coli 55989]
 gi|257752832|dbj|BAI24334.1| recombination protein [Escherichia coli O26:H11 str. 11368]
 gi|257763420|dbj|BAI34915.1| recombination protein [Escherichia coli O111:H- str. 11128]
 gi|306908276|gb|EFN38775.1| AAA ATPase central domain protein [Escherichia coli W]
 gi|315060177|gb|ADT74504.1| recombination protein [Escherichia coli W]
 gi|323157222|gb|EFZ43345.1| magnesium chelatase, subunit ChlI family protein [Escherichia coli
           EPECa14]
 gi|323165353|gb|EFZ51140.1| magnesium chelatase, subunit ChlI family protein [Shigella sonnei
           53G]
 gi|323172136|gb|EFZ57774.1| magnesium chelatase, subunit ChlI family protein [Escherichia coli
           LT-68]
 gi|323379266|gb|ADX51534.1| AAA ATPase central domain protein [Escherichia coli KO11]
          Length = 447

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP  L ++ GQ   + A   L   IEA       L  ++  GPPG GKTTLA+V+AR  
Sbjct: 20  MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             +       TSG   I +A + A    N   R +LF+DE+HR +   ++   P +ED  
Sbjct: 75  NADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134

Query: 134 LDLM--VGEGPS 143
           +  +    E PS
Sbjct: 135 ITFIGATTENPS 146


>gi|302335915|ref|YP_003801122.1| Recombination protein MgsA [Olsenella uli DSM 7084]
 gi|301319755|gb|ADK68242.1| Recombination protein MgsA [Olsenella uli DSM 7084]
          Length = 462

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 107/230 (46%), Gaps = 35/230 (15%)

Query: 22  LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP+TL+ F GQ +A    S L+  IE      + L  VL  GP G GKTTLA+++A   
Sbjct: 23  VRPQTLDGFVGQRQAVGEGSWLRRAIEH-----DTLSSVLLYGPAGTGKTTLARIIANTT 77

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131
              F   S  V     DL   +   E        R +LF+DEIHR +   ++ L  A+ED
Sbjct: 78  HAEFVEVSA-VTGTVRDLRREIDAAESRLLASGRRTILFVDEIHRFNRTQQDALLHAVED 136

Query: 132 FQLDLMVGEGPSARSVKIN---LSRFTLIAAT------TRVGLLTNPLQDRFGI--PIRL 180
             + ++VG        ++N   +SR  ++  T       R+ L+   + D FG+     L
Sbjct: 137 RTV-VLVGATTENPYFEVNSALISRSRVVELTPLDDEAVRL-LVRRAVDDEFGLNGAFEL 194

Query: 181 NFYEIEDLKTIVQRG--AKLTGLAVTDEAAC---EIAMRSRGTP-RIAGR 224
           +   IE++ T+      A LT L +  + A    ++A  +R +P RI  R
Sbjct: 195 DDEAIEEIVTLSGGDGRAALTSLELASQMAAPAGDVAQATRESPVRITSR 244


>gi|293414174|ref|ZP_06656823.1| replication-associated recombination protein A [Escherichia coli
           B185]
 gi|291434232|gb|EFF07205.1| replication-associated recombination protein A [Escherichia coli
           B185]
          Length = 447

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP  L ++ GQ   + A   L   IEA       L  ++  GPPG GKTTLA+V+AR  
Sbjct: 20  MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             +       TSG   I +A + A    N   R +LF+DE+HR +   ++   P +ED  
Sbjct: 75  NADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134

Query: 134 LDLM--VGEGPS 143
           +  +    E PS
Sbjct: 135 ITFIGATTENPS 146


>gi|167550366|ref|ZP_02344123.1| AAA ATPase, central domain protein [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205324653|gb|EDZ12492.1| AAA ATPase, central domain protein [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
          Length = 447

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP  L ++ GQ   + A   L   IEA       L  ++  GPPG GKTTLA+V+AR  
Sbjct: 20  MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             +       TSG   I +A + A    N   R +LF+DE+HR +   ++   P +ED  
Sbjct: 75  SADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134

Query: 134 LDLM--VGEGPS 143
           +  +    E PS
Sbjct: 135 ITFIGATTENPS 146


>gi|333008794|gb|EGK28254.1| ATPase family associated with various cellular activities family
           protein [Shigella flexneri K-272]
 gi|333020322|gb|EGK39588.1| ATPase family associated with various cellular activities family
           protein [Shigella flexneri K-227]
          Length = 447

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP  L ++ GQ   + A   L   IEA       L  ++  GPPG GKTTLA+V+AR  
Sbjct: 20  MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             +       TSG   I +A + A    N   R +LF+DE+HR +   ++   P +ED  
Sbjct: 75  NADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134

Query: 134 LDLM--VGEGPS 143
           +  +    E PS
Sbjct: 135 ITFIGATTENPS 146


>gi|26341102|dbj|BAC34213.1| unnamed protein product [Mus musculus]
          Length = 660

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 75/151 (49%), Gaps = 21/151 (13%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75
           +RP TL+++ GQ  A      L+  +EA +     +  ++  GPPG GKTTLA ++A   
Sbjct: 226 MRPDTLQDYIGQSRAVGQETLLRSLLEANE-----IPSLILWGPPGCGKTTLAHIIANNS 280

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPA 128
           ++  + F + S    AK  D+  ++   ++       + +LFIDEIHR +   ++   P 
Sbjct: 281 KKHSIRFVTLSA-TNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPH 339

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLI 157
           +E   + L+    E PS +     LSR  +I
Sbjct: 340 VECGTITLIGATTENPSFQVNAALLSRCRVI 370


>gi|15830231|ref|NP_309004.1| recombination factor protein RarA [Escherichia coli O157:H7 str.
           Sakai]
 gi|16128859|ref|NP_415412.1| recombination protein involved in processing recombnation
           intermediates at replication forks [Escherichia coli
           str. K-12 substr. MG1655]
 gi|26246918|ref|NP_752958.1| recombination factor protein RarA [Escherichia coli CFT073]
 gi|82777586|ref|YP_403935.1| recombination factor protein RarA [Shigella dysenteriae Sd197]
 gi|89107742|ref|AP_001522.1| recombination protein [Escherichia coli str. K-12 substr. W3110]
 gi|110641092|ref|YP_668822.1| recombination factor protein RarA [Escherichia coli 536]
 gi|157160415|ref|YP_001457733.1| recombination factor protein RarA [Escherichia coli HS]
 gi|168752126|ref|ZP_02777148.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           O157:H7 str. EC4113]
 gi|168756983|ref|ZP_02781990.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           O157:H7 str. EC4401]
 gi|168762974|ref|ZP_02787981.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           O157:H7 str. EC4501]
 gi|168769885|ref|ZP_02794892.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           O157:H7 str. EC4486]
 gi|168776257|ref|ZP_02801264.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           O157:H7 str. EC4196]
 gi|168783802|ref|ZP_02808809.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           O157:H7 str. EC4076]
 gi|168787320|ref|ZP_02812327.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           O157:H7 str. EC869]
 gi|168801426|ref|ZP_02826433.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           O157:H7 str. EC508]
 gi|170080550|ref|YP_001729870.1| recombination protein [Escherichia coli str. K-12 substr. DH10B]
 gi|170682500|ref|YP_001744278.1| recombination factor protein RarA [Escherichia coli SMS-3-5]
 gi|191172124|ref|ZP_03033668.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           F11]
 gi|193070763|ref|ZP_03051698.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           E110019]
 gi|194438737|ref|ZP_03070824.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           101-1]
 gi|195939555|ref|ZP_03084937.1| recombination factor protein RarA [Escherichia coli O157:H7 str.
           EC4024]
 gi|208815727|ref|ZP_03256906.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           O157:H7 str. EC4045]
 gi|208822111|ref|ZP_03262430.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           O157:H7 str. EC4042]
 gi|209397045|ref|YP_002269565.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           O157:H7 str. EC4115]
 gi|209918141|ref|YP_002292225.1| recombination factor protein RarA [Escherichia coli SE11]
 gi|217324512|ref|ZP_03440596.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           O157:H7 str. TW14588]
 gi|218548414|ref|YP_002382205.1| recombination factor protein RarA [Escherichia fergusonii ATCC
           35469]
 gi|218688680|ref|YP_002396892.1| recombination factor protein RarA [Escherichia coli ED1a]
 gi|218704321|ref|YP_002411840.1| recombination factor protein RarA [Escherichia coli UMN026]
 gi|227884141|ref|ZP_04001946.1| recombination ATPase [Escherichia coli 83972]
 gi|238900150|ref|YP_002925946.1| recombination protein [Escherichia coli BW2952]
 gi|253774079|ref|YP_003036910.1| recombination factor protein RarA [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254161006|ref|YP_003044114.1| recombination factor protein RarA [Escherichia coli B str. REL606]
 gi|254792092|ref|YP_003076929.1| recombination factor protein RarA [Escherichia coli O157:H7 str.
           TW14359]
 gi|256023407|ref|ZP_05437272.1| recombination factor protein RarA [Escherichia sp. 4_1_40B]
 gi|261227397|ref|ZP_05941678.1| recombination protein [Escherichia coli O157:H7 str. FRIK2000]
 gi|261256180|ref|ZP_05948713.1| recombination protein [Escherichia coli O157:H7 str. FRIK966]
 gi|293404199|ref|ZP_06648193.1| recombination factor protein RarA [Escherichia coli FVEC1412]
 gi|293409270|ref|ZP_06652846.1| conserved hypothetical protein [Escherichia coli B354]
 gi|297518812|ref|ZP_06937198.1| recombination factor protein RarA [Escherichia coli OP50]
 gi|298379980|ref|ZP_06989585.1| replication-associated recombination protein A [Escherichia coli
           FVEC1302]
 gi|306812652|ref|ZP_07446845.1| recombination factor protein RarA [Escherichia coli NC101]
 gi|307137520|ref|ZP_07496876.1| recombination factor protein RarA [Escherichia coli H736]
 gi|309784009|ref|ZP_07678653.1| ATPase family associated with various cellular activities (AAA)
           family protein [Shigella dysenteriae 1617]
 gi|331641413|ref|ZP_08342548.1| replication-associated recombination protein A [Escherichia coli
           H736]
 gi|331646159|ref|ZP_08347262.1| replication-associated recombination protein A [Escherichia coli
           M605]
 gi|331651911|ref|ZP_08352930.1| replication-associated recombination protein A [Escherichia coli
           M718]
 gi|331656964|ref|ZP_08357926.1| replication-associated recombination protein A [Escherichia coli
           TA206]
 gi|331662307|ref|ZP_08363230.1| replication-associated recombination protein A [Escherichia coli
           TA143]
 gi|331667266|ref|ZP_08368131.1| replication-associated recombination protein A [Escherichia coli
           TA271]
 gi|331672433|ref|ZP_08373223.1| replication-associated recombination protein A [Escherichia coli
           TA280]
 gi|331676679|ref|ZP_08377375.1| replication-associated recombination protein A [Escherichia coli
           H591]
 gi|331682401|ref|ZP_08383020.1| replication-associated recombination protein A [Escherichia coli
           H299]
 gi|77416799|sp|P0AAZ6|RARA_ECO57 RecName: Full=Replication-associated recombination protein A
 gi|77416800|sp|P0AAZ5|RARA_ECOL6 RecName: Full=Replication-associated recombination protein A
 gi|77416801|sp|P0AAZ4|RARA_ECOLI RecName: Full=Replication-associated recombination protein A
 gi|321160007|pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
           Mgsa
 gi|321160008|pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
           Mgsa
 gi|321160009|pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
           Mgsa
 gi|321160010|pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
           Mgsa
 gi|26107318|gb|AAN79501.1|AE016758_105 Hypothetical protein ycaJ [Escherichia coli CFT073]
 gi|1787119|gb|AAC73978.1| recombination protein involved in processing recombnation
           intermediates at replication forks [Escherichia coli
           str. K-12 substr. MG1655]
 gi|4062469|dbj|BAA35617.1| recombination protein [Escherichia coli str. K12 substr. W3110]
 gi|13360436|dbj|BAB34400.1| putative polynucleotide enzyme [Escherichia coli O157:H7 str.
           Sakai]
 gi|81241734|gb|ABB62444.1| putative polynucleotide enzyme [Shigella dysenteriae Sd197]
 gi|110342684|gb|ABG68921.1| putative polynucleotide enzyme [Escherichia coli 536]
 gi|157066095|gb|ABV05350.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           HS]
 gi|169888385|gb|ACB02092.1| recombination protein [Escherichia coli str. K-12 substr. DH10B]
 gi|170520218|gb|ACB18396.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           SMS-3-5]
 gi|187768384|gb|EDU32228.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           O157:H7 str. EC4196]
 gi|188013952|gb|EDU52074.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           O157:H7 str. EC4113]
 gi|188998918|gb|EDU67904.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           O157:H7 str. EC4076]
 gi|189355914|gb|EDU74333.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           O157:H7 str. EC4401]
 gi|189361172|gb|EDU79591.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           O157:H7 str. EC4486]
 gi|189366832|gb|EDU85248.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           O157:H7 str. EC4501]
 gi|189372743|gb|EDU91159.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           O157:H7 str. EC869]
 gi|189376426|gb|EDU94842.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           O157:H7 str. EC508]
 gi|190907651|gb|EDV67246.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           F11]
 gi|192955956|gb|EDV86424.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           E110019]
 gi|194422369|gb|EDX38369.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           101-1]
 gi|208732375|gb|EDZ81063.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           O157:H7 str. EC4045]
 gi|208737596|gb|EDZ85279.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           O157:H7 str. EC4042]
 gi|209158445|gb|ACI35878.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           O157:H7 str. EC4115]
 gi|209775028|gb|ACI85826.1| putative polynucleotide enzyme [Escherichia coli]
 gi|209775030|gb|ACI85827.1| putative polynucleotide enzyme [Escherichia coli]
 gi|209775032|gb|ACI85828.1| putative polynucleotide enzyme [Escherichia coli]
 gi|209775034|gb|ACI85829.1| putative polynucleotide enzyme [Escherichia coli]
 gi|209775036|gb|ACI85830.1| putative polynucleotide enzyme [Escherichia coli]
 gi|209911400|dbj|BAG76474.1| putative polynucleotide enzyme [Escherichia coli SE11]
 gi|217320733|gb|EEC29157.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           O157:H7 str. TW14588]
 gi|218355955|emb|CAQ88571.1| recombination protein [Escherichia fergusonii ATCC 35469]
 gi|218426244|emb|CAR07069.1| recombination protein [Escherichia coli ED1a]
 gi|218431418|emb|CAR12296.1| recombination protein [Escherichia coli UMN026]
 gi|222032626|emb|CAP75365.1| Uncharacterized protein ycaJ [Escherichia coli LF82]
 gi|227838893|gb|EEJ49359.1| recombination ATPase [Escherichia coli 83972]
 gi|238863427|gb|ACR65425.1| recombination protein [Escherichia coli BW2952]
 gi|242376707|emb|CAQ31420.1| recombination factor [Escherichia coli BL21(DE3)]
 gi|253325123|gb|ACT29725.1| AAA ATPase central domain protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253972907|gb|ACT38578.1| recombination protein [Escherichia coli B str. REL606]
 gi|253977121|gb|ACT42791.1| recombination protein [Escherichia coli BL21(DE3)]
 gi|254591492|gb|ACT70853.1| recombination protein [Escherichia coli O157:H7 str. TW14359]
 gi|260449962|gb|ACX40384.1| AAA ATPase central domain protein [Escherichia coli DH1]
 gi|284920745|emb|CBG33808.1| putative ATPase [Escherichia coli 042]
 gi|291428785|gb|EFF01810.1| recombination factor protein RarA [Escherichia coli FVEC1412]
 gi|291469738|gb|EFF12222.1| conserved hypothetical protein [Escherichia coli B354]
 gi|298279678|gb|EFI21186.1| replication-associated recombination protein A [Escherichia coli
           FVEC1302]
 gi|305853415|gb|EFM53854.1| recombination factor protein RarA [Escherichia coli NC101]
 gi|307552734|gb|ADN45509.1| hypothetical protein with a putative UvrD-like DNA helicase domain
           [Escherichia coli ABU 83972]
 gi|308928152|gb|EFP73615.1| ATPase family associated with various cellular activities (AAA)
           family protein [Shigella dysenteriae 1617]
 gi|309701168|emb|CBJ00468.1| putative ATPase [Escherichia coli ETEC H10407]
 gi|312945415|gb|ADR26242.1| recombination factor protein RarA [Escherichia coli O83:H1 str. NRG
           857C]
 gi|315135540|dbj|BAJ42699.1| recombination factor protein RarA [Escherichia coli DH1]
 gi|320192621|gb|EFW67262.1| recombination factor protein RarA [Escherichia coli O157:H7 str.
           EC1212]
 gi|320202287|gb|EFW76858.1| recombination factor protein RarA [Escherichia coli EC4100B]
 gi|320637762|gb|EFX07554.1| recombination factor protein RarA [Escherichia coli O157:H7 str.
           G5101]
 gi|320642886|gb|EFX12087.1| recombination factor protein RarA [Escherichia coli O157:H- str.
           493-89]
 gi|320648343|gb|EFX16998.1| recombination factor protein RarA [Escherichia coli O157:H- str. H
           2687]
 gi|320654181|gb|EFX22249.1| recombination factor protein RarA [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320659805|gb|EFX27361.1| recombination factor protein RarA [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320664274|gb|EFX31425.1| recombination factor protein RarA [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323937998|gb|EGB34260.1| ATPase [Escherichia coli E1520]
 gi|323942808|gb|EGB38973.1| ATPase [Escherichia coli E482]
 gi|323962940|gb|EGB58513.1| ATPase [Escherichia coli H489]
 gi|323969606|gb|EGB64893.1| ATPase [Escherichia coli TA007]
 gi|323976721|gb|EGB71809.1| ATPase [Escherichia coli TW10509]
 gi|324113811|gb|EGC07786.1| ATPase [Escherichia fergusonii B253]
 gi|326338212|gb|EGD62041.1| recombination factor protein RarA [Escherichia coli O157:H7 str.
           1125]
 gi|326346189|gb|EGD69927.1| recombination factor protein RarA [Escherichia coli O157:H7 str.
           1044]
 gi|330910674|gb|EGH39184.1| ATPase, AAA family [Escherichia coli AA86]
 gi|331038211|gb|EGI10431.1| replication-associated recombination protein A [Escherichia coli
           H736]
 gi|331044911|gb|EGI17038.1| replication-associated recombination protein A [Escherichia coli
           M605]
 gi|331050189|gb|EGI22247.1| replication-associated recombination protein A [Escherichia coli
           M718]
 gi|331055212|gb|EGI27221.1| replication-associated recombination protein A [Escherichia coli
           TA206]
 gi|331060729|gb|EGI32693.1| replication-associated recombination protein A [Escherichia coli
           TA143]
 gi|331065622|gb|EGI37515.1| replication-associated recombination protein A [Escherichia coli
           TA271]
 gi|331070339|gb|EGI41704.1| replication-associated recombination protein A [Escherichia coli
           TA280]
 gi|331075368|gb|EGI46666.1| replication-associated recombination protein A [Escherichia coli
           H591]
 gi|331080032|gb|EGI51211.1| replication-associated recombination protein A [Escherichia coli
           H299]
 gi|332342281|gb|AEE55615.1| recombination factor protein RarA [Escherichia coli UMNK88]
          Length = 447

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP  L ++ GQ   + A   L   IEA       L  ++  GPPG GKTTLA+V+AR  
Sbjct: 20  MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             +       TSG   I +A + A    N   R +LF+DE+HR +   ++   P +ED  
Sbjct: 75  NADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134

Query: 134 LDLM--VGEGPS 143
           +  +    E PS
Sbjct: 135 ITFIGATTENPS 146


>gi|15800755|ref|NP_286769.1| recombination factor protein RarA [Escherichia coli O157:H7 EDL933]
 gi|25329891|pir||G85614 probable polynucleotide enzyme ycaJ [imported] - Escherichia coli
           (strain O157:H7, substrain EDL933)
 gi|12514054|gb|AAG55379.1|AE005278_5 putative polynucleotide enzyme [Escherichia coli O157:H7 str.
           EDL933]
          Length = 447

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP  L ++ GQ   + A   L   IEA       L  ++  GPPG GKTTLA+V+AR  
Sbjct: 20  MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             +       TSG   I +A + A    N   R +LF+DE+HR +   ++   P +ED  
Sbjct: 75  NADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134

Query: 134 LDLM--VGEGPS 143
           +  +    E PS
Sbjct: 135 ITFIGATTENPS 146


>gi|325496837|gb|EGC94696.1| recombination factor protein RarA [Escherichia fergusonii ECD227]
          Length = 447

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP  L ++ GQ   + A   L   IEA       L  ++  GPPG GKTTLA+V+AR  
Sbjct: 20  MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             +       TSG   I +A + A    N   R +LF+DE+HR +   ++   P +ED  
Sbjct: 75  NADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134

Query: 134 LDLM--VGEGPS 143
           +  +    E PS
Sbjct: 135 ITFIGATTENPS 146


>gi|297181007|gb|ADI17208.1| ATPase related to the helicase subunit of the holliday junction
           resolvase [uncultured delta proteobacterium
           HF0070_10I02]
          Length = 481

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 81/162 (50%), Gaps = 28/162 (17%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP +++E  GQ   +   +  +V +E        L  +L  GPPG GKTTLA+++A ++
Sbjct: 61  MRPTSIDEIVGQDHLIGPDTPFRVALENG-----TLSSLLLWGPPGCGKTTLARLLANKV 115

Query: 79  GVNFRSTSGPV-----IAKAGDLAALLTNLEDR-DVLFIDEIHRLSIIVEEILYPAMEDF 132
           G+ F   S  +     + K  D A  +  LE R  +LF+DEIHR +   ++ L P +E+ 
Sbjct: 116 GLKFLQLSAVMDGIKELRKLLDRARDIKTLERRGSLLFVDEIHRWNKAQQDALLPHVEEG 175

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAAT-TRVGLLT-NPL 170
            + L+    E P           F +I A  +R  LLT NPL
Sbjct: 176 TVVLIGATTENPG----------FQIIPALRSRCWLLTLNPL 207


>gi|170769294|ref|ZP_02903747.1| putative DNA recombination-associated ATPase RarA [Escherichia
           albertii TW07627]
 gi|170121946|gb|EDS90877.1| putative DNA recombination-associated ATPase RarA [Escherichia
           albertii TW07627]
          Length = 447

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP  L ++ GQ   + A   L   IEA       L  ++  GPPG GKTTLA+V+AR  
Sbjct: 20  MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             +       TSG   I +A + A    N   R +LF+DE+HR +   ++   P +ED  
Sbjct: 75  NADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134

Query: 134 LDLM--VGEGPS 143
           +  +    E PS
Sbjct: 135 ITFIGATTENPS 146


>gi|168236871|ref|ZP_02661929.1| AAA ATPase, central domain protein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|194734760|ref|YP_002114014.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|194710262|gb|ACF89483.1| AAA ATPase, central domain protein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197290124|gb|EDY29481.1| AAA ATPase, central domain protein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
          Length = 447

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP  L ++ GQ   + A   L   IEA       L  ++  GPPG GKTTLA+V+AR  
Sbjct: 20  MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             +       TSG   I +A + A    N   R +LF+DE+HR +   ++   P +ED  
Sbjct: 75  SADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134

Query: 134 LDLM--VGEGPS 143
           +  +    E PS
Sbjct: 135 ITFIGATTENPS 146


>gi|170020706|ref|YP_001725660.1| recombination factor protein RarA [Escherichia coli ATCC 8739]
 gi|312971019|ref|ZP_07785198.1| ATPase family associated with various cellular activities (AAA)
           family protein [Escherichia coli 1827-70]
 gi|169755634|gb|ACA78333.1| AAA ATPase central domain protein [Escherichia coli ATCC 8739]
 gi|310336780|gb|EFQ01947.1| ATPase family associated with various cellular activities (AAA)
           family protein [Escherichia coli 1827-70]
          Length = 447

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP  L ++ GQ   + A   L   IEA       L  ++  GPPG GKTTLA+V+AR  
Sbjct: 20  MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             +       TSG   I +A + A    N   R +LF+DE+HR +   ++   P +ED  
Sbjct: 75  NADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134

Query: 134 LDLM--VGEGPS 143
           +  +    E PS
Sbjct: 135 ITFIGATTENPS 146


>gi|118497986|ref|YP_899036.1| ATPase, AAA family [Francisella tularensis subsp. novicida U112]
 gi|194323209|ref|ZP_03056993.1| ATPase, AAA family protein [Francisella tularensis subsp. novicida
           FTE]
 gi|118423892|gb|ABK90282.1| AAA family-ATPase [Francisella novicida U112]
 gi|194322573|gb|EDX20053.1| ATPase, AAA family protein [Francisella tularensis subsp. novicida
           FTE]
          Length = 412

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 77/149 (51%), Gaps = 15/149 (10%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP++++E  GQ    S   +  +      + +  ++  G PG+GKT+LA+++A    + 
Sbjct: 10  IRPQSIDEIVGQEHLLSQHGILTKILAG--DGICSLVLCGKPGVGKTSLARIIASSKKLE 67

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137
           F   S  V +   D+  L+T+ +  D  VLF+DEIHR +   ++IL P +E  ++ L+  
Sbjct: 68  FFELSA-VDSGVKDIKKLITDNQHLDSFVLFLDEIHRFNKSQQDILLPYVESGKIILIGA 126

Query: 138 VGEGPS--------ARSVKINLSRFTLIA 158
             E P+        +R   + L R +L+A
Sbjct: 127 TTENPTYYLNDALVSRLFILRLKRLSLVA 155


>gi|261868432|ref|YP_003256354.1| recombination factor protein RarA [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413764|gb|ACX83135.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 446

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 64/140 (45%), Gaps = 20/140 (14%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP TL ++ GQ       K   +A +A    +  ++F GPPG GKTTLA+++A  + V 
Sbjct: 20  MRPTTLAQYCGQSHLLGEGKPLRKAIEAGY--VHSMIFWGPPGTGKTTLAEIIAHRINVE 77

Query: 82  FRSTSGPVI-----------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
               S               AK   LA L      R + F+DE+HR +   ++   P +E
Sbjct: 78  VERISAVTSGIKEIREAIDKAKQNKLAGL------RTIFFVDEVHRFNKSQQDAFLPHIE 131

Query: 131 DFQLDLMVGEGPSARSVKIN 150
           D  + + +G      S ++N
Sbjct: 132 DGTI-IFIGATTENPSFELN 150


>gi|215486022|ref|YP_002328453.1| recombination factor protein RarA [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312969040|ref|ZP_07783247.1| ATPase family associated with various cellular activities (AAA)
           family protein [Escherichia coli 2362-75]
 gi|215264094|emb|CAS08436.1| recombination protein [Escherichia coli O127:H6 str. E2348/69]
 gi|312286442|gb|EFR14355.1| ATPase family associated with various cellular activities (AAA)
           family protein [Escherichia coli 2362-75]
          Length = 447

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP  L ++ GQ   + A   L   IEA       L  ++  GPPG GKTTLA+V+AR  
Sbjct: 20  MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             +       TSG   I +A + A    N   R +LF+DE+HR +   ++   P +ED  
Sbjct: 75  NADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134

Query: 134 LDLM--VGEGPS 143
           +  +    E PS
Sbjct: 135 ITFIGATTENPS 146


>gi|24112267|ref|NP_706777.1| recombination factor protein RarA [Shigella flexneri 2a str. 301]
 gi|30062379|ref|NP_836550.1| recombination factor protein RarA [Shigella flexneri 2a str. 2457T]
 gi|24051119|gb|AAN42484.1| putative polynucleotide enzyme [Shigella flexneri 2a str. 301]
 gi|30040625|gb|AAP16356.1| putative polynucleotide enzyme [Shigella flexneri 2a str. 2457T]
 gi|281600220|gb|ADA73204.1| putative polynucleotide enzyme [Shigella flexneri 2002017]
 gi|313650196|gb|EFS14608.1| ATPase family associated with various cellular activities (AAA)
           family protein [Shigella flexneri 2a str. 2457T]
 gi|332762947|gb|EGJ93197.1| ATPase family associated with various cellular activities family
           protein [Shigella flexneri K-671]
 gi|332768070|gb|EGJ98256.1| recombination factor [Shigella flexneri 2930-71]
 gi|333006695|gb|EGK26194.1| ATPase family associated with various cellular activities family
           protein [Shigella flexneri VA-6]
 gi|333021033|gb|EGK40291.1| ATPase family associated with various cellular activities family
           protein [Shigella flexneri K-304]
          Length = 447

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP  L ++ GQ   + A   L   IEA       L  ++  GPPG GKTTLA+V+AR  
Sbjct: 20  MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             +       TSG   I +A + A    N   R +LF+DE+HR +   ++   P +ED  
Sbjct: 75  NADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134

Query: 134 LDLM--VGEGPS 143
           +  +    E PS
Sbjct: 135 ITFIGATTENPS 146


>gi|332759806|gb|EGJ90109.1| ATPase family associated with various cellular activities family
           protein [Shigella flexneri 4343-70]
 gi|333006990|gb|EGK26485.1| ATPase family associated with various cellular activities family
           protein [Shigella flexneri K-218]
          Length = 447

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP  L ++ GQ   + A   L   IEA       L  ++  GPPG GKTTLA+V+AR  
Sbjct: 20  MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             +       TSG   I +A + A    N   R +LF+DE+HR +   ++   P +ED  
Sbjct: 75  NADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134

Query: 134 LDLM--VGEGPS 143
           +  +    E PS
Sbjct: 135 ITFIGATTENPS 146


>gi|319783347|ref|YP_004142823.1| ATPase AAA [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317169235|gb|ADV12773.1| AAA ATPase central domain protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 435

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 68/138 (49%), Gaps = 16/138 (11%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKAR---AEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPR L E  GQ           + A  R   + +L  ++F GPPG GKTT+A+++A E 
Sbjct: 23  LRPRNLGEVVGQEHLTGP-----DGALTRLIGSGSLGSMIFWGPPGTGKTTVARLLAGET 77

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDF 132
            + F   S  V +   DL  +  + + R       +LF+DEIHR +   ++   P MED 
Sbjct: 78  SLAFEQISA-VFSGVADLKKVFESAKLRRANGRQTLLFVDEIHRFNRAQQDSFLPVMEDG 136

Query: 133 QLDLMVGEGPSARSVKIN 150
            + ++VG      S ++N
Sbjct: 137 TV-VLVGATTENPSFELN 153


>gi|251792120|ref|YP_003006840.1| recombination factor protein RarA [Aggregatibacter aphrophilus
           NJ8700]
 gi|247533507|gb|ACS96753.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Aggregatibacter
           aphrophilus NJ8700]
          Length = 446

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 57/121 (47%), Gaps = 19/121 (15%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP TL ++ GQ       K   +A +A    +  ++F GPPG GKTTLA+++A+ +   
Sbjct: 20  MRPTTLAQYCGQSHLLGEGKPLRKAIEA--GYVHSMIFWGPPGTGKTTLAEIIAQRINAE 77

Query: 82  FRSTSGPVI-----------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
               S               AK   LA L      R +LF+DE+HR +   ++   P +E
Sbjct: 78  VERISAVTSGIKEIRKAIEKAKQNKLAGL------RTILFVDEVHRFNKSQQDAFLPHIE 131

Query: 131 D 131
           D
Sbjct: 132 D 132


>gi|323215845|gb|EGA00585.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
          Length = 466

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP  L ++ GQ   + A   L   IEA       L  ++  GPPG GKTTLA+V+AR  
Sbjct: 20  MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             +       TSG   I +A + A    N   R +LF+DE+HR +   ++   P +ED  
Sbjct: 75  SADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134

Query: 134 LDLM--VGEGPS 143
           +  +    E PS
Sbjct: 135 ITFIGATTENPS 146


>gi|319408738|emb|CBI82395.1| ATPase, AAA family [Bartonella schoenbuchensis R1]
          Length = 443

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 74/160 (46%), Gaps = 22/160 (13%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPR+L E  GQ         L   IE+      +   ++F GPPG GKTT+A+++A E 
Sbjct: 24  MRPRSLSEVVGQDHLIGTEGFLSRMIESG-----SFGSMIFWGPPGTGKTTIARLLALET 78

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDF 132
              F   S  +     +L  +    +       R +LF+DEIHR +   +++  P MED 
Sbjct: 79  NFAFEQVSA-ICTGVTELKKIFEVAQARFISGCRTLLFVDEIHRFNRAQQDVFLPFMEDG 137

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
            + ++VG      S ++N       A  +R  +LT  L D
Sbjct: 138 TV-VLVGATTENPSFELN------SALLSRARVLTFRLHD 170


>gi|313677223|ref|YP_004055219.1| ATPase AAA [Marivirga tractuosa DSM 4126]
 gi|312943921|gb|ADR23111.1| AAA ATPase central domain protein [Marivirga tractuosa DSM 4126]
          Length = 425

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 112/253 (44%), Gaps = 32/253 (12%)

Query: 22  LRPRTLEEFTGQVEACSNLKVF-IEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           +RP  LEE  GQ        V  +  A+ +  ++   +F GPPG+GKTT+A ++A ++  
Sbjct: 13  MRPTKLEELVGQQHLVGEKGVLRLTIAQGKVPSM---IFWGPPGVGKTTIANIIANQVKA 69

Query: 81  NFRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138
            F++ S  + A   D+  ++   +   + +LFIDEIHR +   ++ L  A+E   + L +
Sbjct: 70  PFQTLSA-ISAGVKDVREVIQRASRSGKIILFIDEIHRFNKSQQDALLGAVEKGVITL-I 127

Query: 139 GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK----TIVQR 194
           G      S ++N       A  +R  + T            L   E+EDLK    T ++ 
Sbjct: 128 GATTENPSFEVN------SALLSRCQVYT------------LKALELEDLKGLLNTALEN 169

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD-FAEVAHAKTITREIADAALLRL 253
             KL  L +  +    +   S G  R    L   V D + +    K    ++ + A  R+
Sbjct: 170 DEKLKELNIEIKEYEALIQLSGGDARKLLNLFELVIDAYGKDEKIKITNDQVKEIAQNRM 229

Query: 254 AI-DKMGFDQLDL 265
           AI DK G    D+
Sbjct: 230 AIYDKSGEQHYDI 242


>gi|108761837|ref|YP_631057.1| recombination factor protein RarA [Myxococcus xanthus DK 1622]
 gi|108465717|gb|ABF90902.1| ATPase, AAA family [Myxococcus xanthus DK 1622]
          Length = 444

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/119 (37%), Positives = 60/119 (50%), Gaps = 14/119 (11%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRT +EF GQ         L+  IE      +A+   LF GPPG+GKTTLA+++A  +
Sbjct: 24  MRPRTPDEFIGQSHLLGPGRPLRQLIER-----KAIVSSLFWGPPGVGKTTLARMMATGV 78

Query: 79  GVNFRSTSG-----PVIAKAGDLAALLTN-LEDRDVLFIDEIHRLSIIVEEILYPAMED 131
              F   S      P I +    A  L N    R VLF+DEIHR +  V+E   P +E 
Sbjct: 79  DAEFVILSAVSDGIPRIREVVAEAERLRNQYSRRTVLFVDEIHRWAKNVQEQALPHVES 137


>gi|16273484|ref|NP_439735.1| recombination factor protein RarA [Haemophilus influenzae Rd KW20]
 gi|1175611|sp|P45262|RARA_HAEIN RecName: Full=Replication-associated recombination protein A
 gi|1574435|gb|AAC23238.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
          Length = 446

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 61/115 (53%), Gaps = 7/115 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP +LE++ GQ       K   +A +A    +  ++F GPPG GKTTLA+++A+ +   
Sbjct: 20  MRPTSLEQYFGQSHLIGEGKPLRKAIQA--GHIYSMIFWGPPGTGKTTLAEIIAQRINAE 77

Query: 82  FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
                  TSG   I +A D A      + + +LF+DE+HR +   ++   P +ED
Sbjct: 78  VERISAVTSGIKEIREAIDRAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIED 132


>gi|218768257|ref|YP_002342769.1| recombination factor protein RarA [Neisseria meningitidis Z2491]
 gi|121052265|emb|CAM08593.1| hypothetical protein NMA1433 [Neisseria meningitidis Z2491]
          Length = 436

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 66/142 (46%), Gaps = 15/142 (10%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP TL++  GQ   +     L+V +E  K  +     +L  GPPG+GKTTLA+++A+  
Sbjct: 17  LRPHTLDDVVGQEHLIGEGKPLRVAVEGGKPHS-----MLLWGPPGVGKTTLARILAQSF 71

Query: 79  GVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
              F   S        I +A D A +        +LF+DE+HR +   ++   P +E   
Sbjct: 72  NAQFLPVSAVFSGVKDIREAIDKAEIALQQGRATILFVDEVHRFNKAQQDAFLPHVESGL 131

Query: 134 LDLM--VGEGPSARSVKINLSR 153
           L  +    E PS       LSR
Sbjct: 132 LTFIGATTENPSFEVNPALLSR 153


>gi|256020980|ref|ZP_05434845.1| recombination factor protein RarA [Shigella sp. D9]
 gi|332282205|ref|ZP_08394618.1| recombination protein [Shigella sp. D9]
 gi|332104557|gb|EGJ07903.1| recombination protein [Shigella sp. D9]
          Length = 447

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP  L ++ GQ   + A   L   IEA       L  ++  GPPG GKTTLA+V+AR  
Sbjct: 20  MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             +       TSG   I +A + A    N   R +LF+DE+HR +   ++   P +ED  
Sbjct: 75  NADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134

Query: 134 LDLM--VGEGPS 143
           +  +    E PS
Sbjct: 135 ITFIGATTENPS 146


>gi|254805040|ref|YP_003083261.1| hypothetical protein NMO_1076 [Neisseria meningitidis alpha14]
 gi|254668582|emb|CBA06099.1| conserved hypothetical protein [Neisseria meningitidis alpha14]
          Length = 436

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 66/142 (46%), Gaps = 15/142 (10%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP TL++  GQ   +     L+V +E  K  +     +L  GPPG+GKTTLA+++A+  
Sbjct: 17  LRPHTLDDVVGQEHLIGEGKPLRVAVEGGKPHS-----MLLWGPPGVGKTTLARILAQSF 71

Query: 79  GVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
              F   S        I +A D A +        +LF+DE+HR +   ++   P +E   
Sbjct: 72  NAQFLPVSAVFSGVKDIREAIDKAEIALQQGRATILFVDEVHRFNKAQQDAFLPHVESGL 131

Query: 134 LDLM--VGEGPSARSVKINLSR 153
           L  +    E PS       LSR
Sbjct: 132 LTFIGATTENPSFEVNPALLSR 153


>gi|228967474|ref|ZP_04128503.1| hypothetical protein bthur0004_42720 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228792251|gb|EEM39824.1| hypothetical protein bthur0004_42720 [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 420

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 85/330 (25%), Positives = 130/330 (39%), Gaps = 65/330 (19%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  ++E  GQ       K+     +A       ++  GPPG GKT++A  +A   G  
Sbjct: 1   MRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAIAGSTGTP 58

Query: 82  FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
           FR  +  V     D+  ++    +    VL +DE+HRL    ++ L P +E   L     
Sbjct: 59  FRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLL----- 112

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEI----ED-----LK 189
                          TLI ATT     +NP       I  R   +E+    ED     LK
Sbjct: 113 ---------------TLIGATT-----SNPFHAINSAIRSRCQIFELHALTEDDILIGLK 152

Query: 190 TIVQRGAKLTG---LAVTDEAACEIAMRSRGTPRIAGRLLRR--VRDFAEVAHAKTITRE 244
             ++   K  G   + +TDEA    A  S G  R A   L    +  F     A  IT E
Sbjct: 153 RALEDKEKGLGEYAVTITDEALHHFANASGGDMRSAYNALELAVLSSFTTDDQAAEITLE 212

Query: 245 IADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           IA+  L + +   DK G    D+  L+   ++  G  V              A+  L   
Sbjct: 213 IAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDVNA------------ALHYLAR- 257

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
            +I+ G +Q    GR L+ +A++ +G+  P
Sbjct: 258 -LIEAGDLQSI--GRRLLIMAYEDIGLASP 284


>gi|197250604|ref|YP_002145880.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197214307|gb|ACH51704.1| putative DNA recombination-associated ATPase RarA [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
          Length = 447

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP  L ++ GQ   + A   L   IEA       L  ++  GPPG GKTTLA+V+AR  
Sbjct: 20  MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             +       TSG   I +A + A    N   R +LF+DE+HR +   ++   P +ED  
Sbjct: 75  SADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134

Query: 134 LDLM--VGEGPS 143
           +  +    E PS
Sbjct: 135 ITFIGATTENPS 146


>gi|261415680|ref|YP_003249363.1| AAA ATPase central domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261372136|gb|ACX74881.1| AAA ATPase central domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302326489|gb|ADL25690.1| ATPase, AAA family protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 431

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 93/218 (42%), Gaps = 45/218 (20%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L+EF GQ +      +  ++ +   +++  ++F GPPG GKT+LA V+ +     
Sbjct: 9   LRPQNLDEFLGQNKILGQQSLLRKSLEN--DSIPSMIFWGPPGCGKTSLAHVIRQHTKKR 66

Query: 82  FRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           F + S           V+A A  +     +     +LFIDEIHR +   ++ L  A+ED 
Sbjct: 67  FVALSAVASGVKEVKEVLADARQMKKAFMDT----ILFIDEIHRFNKGQQDALLGAVEDG 122

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
            + L+    E P        LSR  LI        L  PL               EDL+T
Sbjct: 123 TVTLIGATTENPGFEVNGALLSRCQLI--------LFAPLSK-------------EDLRT 161

Query: 191 IV-------QRGAKLTGLAVTDEAACEIAMRSRGTPRI 221
           ++        RG +L  + V D    ++  +S G  R 
Sbjct: 162 LIFSALRDHPRGLQLKDVEVEDSVVDKLIAQSEGDARF 199


>gi|254374800|ref|ZP_04990281.1| hypothetical protein FTDG_00976 [Francisella novicida GA99-3548]
 gi|151572519|gb|EDN38173.1| hypothetical protein FTDG_00976 [Francisella novicida GA99-3548]
          Length = 412

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 77/149 (51%), Gaps = 15/149 (10%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP++++E  GQ    S   +  +      + +  ++  G PG+GKT+LA+++A    + 
Sbjct: 10  IRPQSIDEIVGQEHLLSQHGILTKILAG--DGICSLVLCGKPGVGKTSLARIIASSKKLE 67

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137
           F   S  V +   D+  L+T+ +  D  VLF+DEIHR +   ++IL P +E  ++ L+  
Sbjct: 68  FFELSA-VDSGVKDIKKLITDNQHLDSFVLFLDEIHRFNKSQQDILLPYVESGKIILIGA 126

Query: 138 VGEGPS--------ARSVKINLSRFTLIA 158
             E P+        +R   + L R +L+A
Sbjct: 127 TTENPTYYLNDALVSRLFILRLKRLSLVA 155


>gi|149371615|ref|ZP_01891031.1| putative ATPase, AAA family protein [unidentified eubacterium
           SCB49]
 gi|149355242|gb|EDM43802.1| putative ATPase, AAA family protein [unidentified eubacterium
           SCB49]
          Length = 425

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 64/143 (44%), Gaps = 15/143 (10%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRTL+ +  Q             ++ +      ++F GPPG GKTTLA ++A      
Sbjct: 9   IRPRTLDTYLSQQHLVGKGGSL--TSQIKTGVFSSMIFWGPPGTGKTTLASIIAETSDRP 66

Query: 82  FRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           F + S           VIAKA     L T      +LFIDEIHR S   ++ L  A+E  
Sbjct: 67  FYTLSAIDSGVAAVREVIAKAKQGDGLFTT--KNPILFIDEIHRFSKSQQDSLLGAVEKG 124

Query: 133 QLDLM--VGEGPSARSVKINLSR 153
            + L+    E PS   +   LSR
Sbjct: 125 WVTLIGATTENPSFEVIPALLSR 147


>gi|191167587|ref|ZP_03029398.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           B7A]
 gi|190902348|gb|EDV62086.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           B7A]
          Length = 447

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP  L ++ GQ   + A   L   IEA       L  ++  GPPG GKTTLA+V+AR  
Sbjct: 20  MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             +       TSG   I +A + A    N   R +LF+DE+HR +   ++   P +ED  
Sbjct: 75  NADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134

Query: 134 LDLM--VGEGPS 143
           +  +    E PS
Sbjct: 135 ITFIGATTENPS 146


>gi|310767170|gb|ADP12120.1| recombination factor protein RarA [Erwinia sp. Ejp617]
          Length = 447

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 49/146 (33%), Positives = 71/146 (48%), Gaps = 17/146 (11%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
            SRN  Q  A  + +RPRTL E+ GQ   + A   L   IEA       L  ++  GPPG
Sbjct: 8   FSRNEFQPLA--ARMRPRTLAEYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPG 60

Query: 65  LGKTTLAQVVARELGVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GKTTLA+++ R    +       TSG   I +A + A    +   R +LF+DE+HR + 
Sbjct: 61  TGKTTLAEIIGRYGQADVERISAVTSGVKEIREAIERARQNRHAGRRTILFVDEVHRFNK 120

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPS 143
             ++   P +ED  +  +    E PS
Sbjct: 121 SQQDAFLPHIEDGTITFIGATTENPS 146


>gi|255283517|ref|ZP_05348072.1| replication-associated recombination protein A [Bryantella
           formatexigens DSM 14469]
 gi|255265974|gb|EET59179.1| replication-associated recombination protein A [Bryantella
           formatexigens DSM 14469]
          Length = 468

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 69/140 (49%), Gaps = 16/140 (11%)

Query: 20  SLLRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           S LRP  LE+F GQ         L+  IE      + +  ++F GPPG+GKTTLA ++A 
Sbjct: 40  SRLRPERLEDFVGQEHLLGPGKMLRRLIEE-----DQISSMIFWGPPGVGKTTLAGIIAA 94

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130
                F + S  V +   ++  ++   E+      R VLF+DEIHR +   ++   P +E
Sbjct: 95  HTKAEFINFSA-VTSGIKEIKEVMQQAENSRRMGRRTVLFVDEIHRFNKAQQDAFLPFVE 153

Query: 131 DFQLDLMVGEGPSARSVKIN 150
              + +++G      S ++N
Sbjct: 154 KGSI-ILIGATTENPSFEVN 172


>gi|39936283|ref|NP_948559.1| recombination factor protein RarA [Rhodopseudomonas palustris
           CGA009]
 gi|39650138|emb|CAE28661.1| AAA ATPase [Rhodopseudomonas palustris CGA009]
          Length = 443

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 63/135 (46%), Gaps = 10/135 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPR+L +  GQ              + R   L  ++F GPPG GKTT+A+++A    + 
Sbjct: 30  LRPRSLADVVGQDHILGPDGALTRMLQTRT--LGSLVFWGPPGTGKTTVARLLADATELQ 87

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F   S  V +   DL  +      R       +LF+DE+HR +   ++   P MED  + 
Sbjct: 88  FEQISA-VFSGVADLKKVFDAARARREMGKGTLLFVDEVHRFNKAQQDSFLPVMEDGTV- 145

Query: 136 LMVGEGPSARSVKIN 150
           +MVG      S ++N
Sbjct: 146 VMVGATTENPSFELN 160


>gi|237785603|ref|YP_002906308.1| hypothetical protein ckrop_1012 [Corynebacterium kroppenstedtii DSM
           44385]
 gi|237758515|gb|ACR17765.1| conserved hypothetical protein [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 459

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 76/265 (28%), Positives = 116/265 (43%), Gaps = 53/265 (20%)

Query: 22  LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPR L+E  GQ       S L+  +E A   +     V+  GPPG GKTT+A +V+   
Sbjct: 43  MRPRNLDEVVGQEHVLGQGSPLRRLVEGAGDSS-----VILFGPPGTGKTTIASLVSSTT 97

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDF 132
           G  FR  S  + +   ++ ++L           + VLFIDE+HR S   ++ L  A+E+ 
Sbjct: 98  GRRFRVLSA-LSSGVKEIRSVLKEARQALIDGVQTVLFIDEVHRFSKTQQDALLAAVENR 156

Query: 133 QLDLMVG--EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
            + L+    E P+   V   LSR  L+           PL D             E ++T
Sbjct: 157 TVLLVAATTENPNFAVVGPLLSRSLLVQ--------LEPLDD-------------EAIRT 195

Query: 191 IVQRG-AKLTGLA----VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE-VAHAKTITRE 244
           ++ R  +   GLA    + D+A   I   + G  R   R L  V   A+ +   +TIT E
Sbjct: 196 VINRSVSSQRGLAGRIRIDDDAVNSIVAMAGGDAR---RALTYVEASAQSLDDGETITPE 252

Query: 245 I----ADAALLRLAIDKMGFDQLDL 265
           I     D AL++   D+ G    D+
Sbjct: 253 IVANNVDRALVKY--DRDGDQHYDV 275


>gi|192292006|ref|YP_001992611.1| recombination factor protein RarA [Rhodopseudomonas palustris
           TIE-1]
 gi|192285755|gb|ACF02136.1| AAA ATPase central domain protein [Rhodopseudomonas palustris
           TIE-1]
          Length = 443

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 63/135 (46%), Gaps = 10/135 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPR+L +  GQ              + R   L  ++F GPPG GKTT+A+++A    + 
Sbjct: 30  LRPRSLADVVGQDHILGPDGALTRMLQTRT--LGSLVFWGPPGTGKTTVARLLADATELQ 87

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F   S  V +   DL  +      R       +LF+DE+HR +   ++   P MED  + 
Sbjct: 88  FEQISA-VFSGVADLKKVFDAARARREMGKGTLLFVDEVHRFNKAQQDSFLPVMEDGTV- 145

Query: 136 LMVGEGPSARSVKIN 150
           +MVG      S ++N
Sbjct: 146 VMVGATTENPSFELN 160


>gi|154706961|ref|YP_001424634.1| recombination factor protein RarA [Coxiella burnetii Dugway
           5J108-111]
 gi|154356247|gb|ABS77709.1| ATPase, AAA family [Coxiella burnetii Dugway 5J108-111]
          Length = 440

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 66/138 (47%), Gaps = 9/138 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  LEEF GQ       K    A +     L  ++  GPPG GKTTLA+++A++ G  
Sbjct: 14  MRPGCLEEFVGQSHLLGKDKPLFRAIEK--GKLHSMILWGPPGSGKTTLAEIMAQKAGAR 71

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRD----VLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
             S S  V+A   D+  ++   E       +LF+DE+H  +   ++   P +E   + L+
Sbjct: 72  VESISA-VLAGVKDIRDVVERAERHKGQATILFVDEVHGFNKSQQDAFLPHVEKGTITLI 130

Query: 138 --VGEGPSARSVKINLSR 153
               E PS +     LSR
Sbjct: 131 GATTENPSFQLNNALLSR 148


>gi|312868678|ref|ZP_07728871.1| putative recombination factor protein RarA [Lactobacillus oris
           PB013-T2-3]
 gi|311095792|gb|EFQ54043.1| putative recombination factor protein RarA [Lactobacillus oris
           PB013-T2-3]
          Length = 170

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 63/119 (52%), Gaps = 3/119 (2%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           L+RP TLE+  GQ    +  +   +           +L  GPPG GKTTLA V+++ L +
Sbjct: 10  LMRPTTLEQMVGQEHLLAPGRPLYQIITEHLSV--SLLLWGPPGSGKTTLAYVMSQTLQL 67

Query: 81  NFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
            F   +  +  K+     +  + ++  VL +DEIHRL+  +++ L P +E+  + L+VG
Sbjct: 68  PFEKFNASIQNKSQLQKLVDAHPDESFVLLLDEIHRLTKPLQDYLLPYLENGHI-LLVG 125


>gi|254673529|emb|CBA08975.1| conserved hypothetical protein [Neisseria meningitidis alpha275]
          Length = 436

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 66/142 (46%), Gaps = 15/142 (10%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP TL++  GQ   +     L+V +E  K  +     +L  GPPG+GKTTLA+++A+  
Sbjct: 17  LRPHTLDDVVGQEHLIGEGKPLRVAVEGGKPHS-----MLLWGPPGVGKTTLARILAQSF 71

Query: 79  GVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
              F   S        I +A D A +        +LF+DE+HR +   ++   P +E   
Sbjct: 72  NAQFLPVSAVFSGVKDIREAIDKAEIALQQGRATILFVDEVHRFNKAQQDAFLPHVESGL 131

Query: 134 LDLM--VGEGPSARSVKINLSR 153
           L  +    E PS       LSR
Sbjct: 132 LTFIGATTENPSFEVNPALLSR 153


>gi|212218615|ref|YP_002305402.1| recombination factor protein RarA [Coxiella burnetii CbuK_Q154]
 gi|212012877|gb|ACJ20257.1| ATPase, AAA family [Coxiella burnetii CbuK_Q154]
          Length = 427

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 66/138 (47%), Gaps = 9/138 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  LEEF GQ       K    A +     L  ++  GPPG GKTTLA+++A++ G  
Sbjct: 1   MRPGCLEEFVGQSHLLGKDKPLFRAIEK--GKLHSMILWGPPGSGKTTLAEIMAQKAGAR 58

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRD----VLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
             S S  V+A   D+  ++   E       +LF+DE+H  +   ++   P +E   + L+
Sbjct: 59  VESISA-VLAGVKDIRDVVERAERHKGQATILFVDEVHGFNKSQQDAFLPHVEKGTITLI 117

Query: 138 --VGEGPSARSVKINLSR 153
               E PS +     LSR
Sbjct: 118 GATTENPSFQLNNALLSR 135


>gi|296313690|ref|ZP_06863631.1| replication-associated recombination protein A [Neisseria
           polysaccharea ATCC 43768]
 gi|296839751|gb|EFH23689.1| replication-associated recombination protein A [Neisseria
           polysaccharea ATCC 43768]
          Length = 436

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 66/142 (46%), Gaps = 15/142 (10%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP TL++  GQ   +     L+V +E  K  +     +L  GPPG+GKTTLA+++A+  
Sbjct: 17  LRPHTLDDVVGQEHLIGEGKPLRVAVEGGKPHS-----MLLWGPPGVGKTTLARILAQSF 71

Query: 79  GVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
              F   S        I +A D A +        +LF+DE+HR +   ++   P +E   
Sbjct: 72  NAQFLPVSAVFSGVKDIREAIDKAEIALQQGRATILFVDEVHRFNKAQQDAFLPHVESGL 131

Query: 134 LDLM--VGEGPSARSVKINLSR 153
           L  +    E PS       LSR
Sbjct: 132 LTFIGATTENPSFEVNPALLSR 153


>gi|261401234|ref|ZP_05987359.1| replication-associated recombination protein A [Neisseria lactamica
           ATCC 23970]
 gi|269208822|gb|EEZ75277.1| replication-associated recombination protein A [Neisseria lactamica
           ATCC 23970]
          Length = 436

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 67/143 (46%), Gaps = 17/143 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP TL++  GQ   +     L+V +E  K  +     +L  GPPG+GKTTLA+++A+  
Sbjct: 17  LRPHTLDDVVGQEHLIGEGKPLRVAVEGGKPHS-----MLLWGPPGVGKTTLARILAQSF 71

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
              F   S  V +   D+   +   E         +LF+DE+HR +   ++   P +E+ 
Sbjct: 72  NAQFLPVSA-VFSGVKDIRGAIDKAEIALQQGRATILFVDEVHRFNKAQQDAFLPYVENG 130

Query: 133 QLDLM--VGEGPSARSVKINLSR 153
            L  +    E PS       LSR
Sbjct: 131 LLTFIGATTENPSFEVNPALLSR 153


>gi|226193735|ref|ZP_03789337.1| ATPase, AAA family [Burkholderia pseudomallei Pakistan 9]
 gi|254298872|ref|ZP_04966322.1| ATPase, AAA family [Burkholderia pseudomallei 406e]
 gi|157809189|gb|EDO86359.1| ATPase, AAA family [Burkholderia pseudomallei 406e]
 gi|225934040|gb|EEH30025.1| ATPase, AAA family [Burkholderia pseudomallei Pakistan 9]
          Length = 485

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 81/326 (24%), Positives = 136/326 (41%), Gaps = 58/326 (17%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL +  GQ         L++  E+ K  +     ++  GPPG+GKTTLA++ A   
Sbjct: 66  LRPKTLADVIGQTHLLGEGKPLRLAFESGKPHS-----MILWGPPGVGKTTLARLTALAF 120

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V+    D+   +    D         +LF+DEIHR +   ++ L P +E 
Sbjct: 121 DCEFIALSA-VLGGVKDIREAMEQARDTLNRTGRHTILFVDEIHRFNKAQQDALLPFVES 179

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
             L   +G      S ++N    + + +  +V +L +  +D              +L+ +
Sbjct: 180 -GLVTFIGATTENPSFEVN----SALLSRAQVYVLKSLAED--------------ELRQL 220

Query: 192 VQRG--AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
           ++R     L GLA  D+A   +   + G  R    LL + +  A  A   TI     DAA
Sbjct: 221 LKRAQDVALGGLAFDDKAVDTLVGYADGDARRFLNLLEQAQTAASSAGVTTI-----DAA 275

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNF-GGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            +  A             +TM AR F  GG    + ISA     R +  D    ++ +  
Sbjct: 276 FVESA-------------MTMNARRFDKGGDNFYDQISALHKSVRGSSPDGALYWLCRML 322

Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIP 332
                P+   R ++ +AW+ +G+  P
Sbjct: 323 DGGADPKYLARRVVRMAWEDIGLADP 348


>gi|15677127|ref|NP_274280.1| recombination factor protein RarA [Neisseria meningitidis MC58]
 gi|7226497|gb|AAF41636.1| conserved hypothetical protein [Neisseria meningitidis MC58]
 gi|254671375|emb|CBA08828.1| conserved hypothetical protein [Neisseria meningitidis alpha153]
 gi|316984713|gb|EFV63674.1| magnesium chelatase, subunit ChlI family protein [Neisseria
           meningitidis H44/76]
 gi|325134496|gb|EGC57141.1| magnesium chelatase, subunit ChlI family [Neisseria meningitidis
           M13399]
 gi|325140513|gb|EGC63034.1| magnesium chelatase, subunit ChlI family [Neisseria meningitidis
           CU385]
 gi|325200112|gb|ADY95567.1| magnesium chelatase, subunit ChlI family [Neisseria meningitidis
           H44/76]
          Length = 436

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 66/142 (46%), Gaps = 15/142 (10%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP TL++  GQ   +     L+V +E  K  +     +L  GPPG+GKTTLA+++A+  
Sbjct: 17  LRPHTLDDVVGQEHLIGEGKPLRVAVEGGKPHS-----MLLWGPPGVGKTTLARILAQSF 71

Query: 79  GVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
              F   S        I +A D A +        +LF+DE+HR +   ++   P +E   
Sbjct: 72  NAQFLPVSAVFSGVKDIREAIDKAEIALQQGRATILFVDEVHRFNKAQQDAFLPHVESGL 131

Query: 134 LDLM--VGEGPSARSVKINLSR 153
           L  +    E PS       LSR
Sbjct: 132 LTFIGATTENPSFEVNPALLSR 153


>gi|332760457|gb|EGJ90746.1| ATPase family associated with various cellular activities family
           protein [Shigella flexneri 2747-71]
          Length = 447

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP  L ++ GQ   + A   L   IEA       L  ++  GPPG GKTTLA+V+AR  
Sbjct: 20  MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             +       TSG   I +A + A    N   R +LF+DE+HR +   ++   P +ED  
Sbjct: 75  NADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134

Query: 134 LDLM--VGEGPS 143
           +  +    E PS
Sbjct: 135 ITFIGATTENPS 146


>gi|161870104|ref|YP_001599274.1| recombination factor protein RarA [Neisseria meningitidis 053442]
 gi|161595657|gb|ABX73317.1| putative ATPase [Neisseria meningitidis 053442]
          Length = 436

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 66/142 (46%), Gaps = 15/142 (10%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP TL++  GQ   +     L+V +E  K  +     +L  GPPG+GKTTLA+++A+  
Sbjct: 17  LRPHTLDDVVGQEHLIGEGKPLRVAVEGGKPHS-----MLLWGPPGVGKTTLARILAQSF 71

Query: 79  GVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
              F   S        I +A D A +        +LF+DE+HR +   ++   P +E   
Sbjct: 72  NAQFLPVSAVFSGVKDIREAIDKAEIALQQGRATILFVDEVHRFNKAQQDAFLPHVESGL 131

Query: 134 LDLM--VGEGPSARSVKINLSR 153
           L  +    E PS       LSR
Sbjct: 132 LTFIGATTENPSFEVNPALLSR 153


>gi|161485713|ref|NP_642336.2| recombination factor protein RarA [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 457

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 16/138 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL+E  GQ   +   S L+  +E+ +  +     ++  GPPG GKTTLA ++A   
Sbjct: 29  MRPRTLDEMVGQKRLLAPDSALRRAVESGRVHS-----MILWGPPGCGKTTLALLLAHYA 83

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDF 132
              F++ S  V++   D+  +L           R VLF+DE+HR +   ++   P +E  
Sbjct: 84  DAEFKAISA-VLSGLPDVRQVLAEAAQRFAGGRRTVLFVDEVHRFNKAQQDAFLPHIERG 142

Query: 133 QLDLMVGEGPSARSVKIN 150
            + L VG      S ++N
Sbjct: 143 TI-LFVGATTENPSFELN 159


>gi|164685937|ref|ZP_01946864.2| ATPase, AAA family [Coxiella burnetii 'MSU Goat Q177']
 gi|165919023|ref|ZP_02219109.1| ATPase, AAA family [Coxiella burnetii RSA 334]
 gi|164601458|gb|EAX32492.2| ATPase, AAA family [Coxiella burnetii 'MSU Goat Q177']
 gi|165917278|gb|EDR35882.1| ATPase, AAA family [Coxiella burnetii RSA 334]
          Length = 440

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 66/138 (47%), Gaps = 9/138 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  LEEF GQ       K    A +     L  ++  GPPG GKTTLA+++A++ G  
Sbjct: 14  MRPGCLEEFVGQSHLLGKDKPLFRAIEK--GKLHSMILWGPPGSGKTTLAEIMAQKAGAR 71

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRD----VLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
             S S  V+A   D+  ++   E       +LF+DE+H  +   ++   P +E   + L+
Sbjct: 72  VESISA-VLAGVKDIRDVVERAERHKGQATILFVDEVHGFNKSQQDAFLPHVEKGTITLI 130

Query: 138 --VGEGPSARSVKINLSR 153
               E PS +     LSR
Sbjct: 131 GATTENPSFQLNNALLSR 148


>gi|227889733|ref|ZP_04007538.1| crossover junction endodeoxyribonuclease [Lactobacillus johnsonii
           ATCC 33200]
 gi|227849597|gb|EEJ59683.1| crossover junction endodeoxyribonuclease [Lactobacillus johnsonii
           ATCC 33200]
          Length = 431

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 17/117 (14%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L+E  GQ     N K+     +A+   L  ++  GPPG+GKT++A  +A      
Sbjct: 8   MRPKNLDEVVGQEHLVGNKKIIRRMVEAKL--LSSMILYGPPGIGKTSIASAIAGSTKYA 65

Query: 82  FRSTSGP--------VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           FR  +          +IA+ G ++  +       +L +DEIHRL    ++ L P +E
Sbjct: 66  FRKLNAATDTKKDLQIIAEEGKMSGTV-------ILLLDEIHRLDKPKQDFLLPLLE 115


>gi|325128338|gb|EGC51222.1| magnesium chelatase, subunit ChlI family [Neisseria meningitidis
           N1568]
          Length = 436

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 66/142 (46%), Gaps = 15/142 (10%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP TL++  GQ   +     L+V +E  K  +     +L  GPPG+GKTTLA+++A+  
Sbjct: 17  LRPHTLDDVVGQEHLIGEGKPLRVAVEGGKPHS-----MLLWGPPGVGKTTLARILAQSF 71

Query: 79  GVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
              F   S        I +A D A +        +LF+DE+HR +   ++   P +E   
Sbjct: 72  NAQFLPVSAVFSGVKDIREAIDKAEIALQQGRATILFVDEVHRFNKAQQDAFLPHVESGL 131

Query: 134 LDLM--VGEGPSARSVKINLSR 153
           L  +    E PS       LSR
Sbjct: 132 LTFIGATTENPSFEVNPALLSR 153


>gi|302337812|ref|YP_003803018.1| ATPase AAA [Spirochaeta smaragdinae DSM 11293]
 gi|301634997|gb|ADK80424.1| AAA ATPase central domain protein [Spirochaeta smaragdinae DSM
           11293]
          Length = 735

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 68/133 (51%), Gaps = 11/133 (8%)

Query: 7   LLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           L S   S E A ++  + PR L+E+ GQ       ++     +A  + L  ++F GPPG 
Sbjct: 3   LFSAAESNEKAPLAYRMSPRNLDEYIGQSHIVGPGRLLRRVIQA--DRLSSLIFYGPPGC 60

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLS 118
           GKT LA+V+A      F  T   V++   +L   +++ ++R        +LF+DE+HR +
Sbjct: 61  GKTALARVIAGTTKSAF-DTLNAVLSGVKELRQSISSAKERKELYDKRTILFVDEVHRWN 119

Query: 119 IIVEEILYPAMED 131
              ++ L P +E+
Sbjct: 120 KAQQDALLPWVEN 132


>gi|294671065|ref|ZP_06735920.1| hypothetical protein NEIELOOT_02773 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307173|gb|EFE48416.1| hypothetical protein NEIELOOT_02773 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 441

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 71/151 (47%), Gaps = 16/151 (10%)

Query: 14  QEDADIS-LLRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           Q DA ++  LRP TL++  GQ   +     L+V +E  K  +     +L  GPPG+GKTT
Sbjct: 8   QPDAPLAERLRPHTLDDVIGQQHLIGEGKPLRVAVEGGKPHS-----MLLWGPPGVGKTT 62

Query: 70  LAQVVARELGVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LA+++A+     F   S        I +A D A +        +LF+DE+HR +   ++ 
Sbjct: 63  LARILAQSFNAQFLPVSAVFSGVKDIREAIDKAEIALQQGRATILFVDEVHRFNKAQQDA 122

Query: 125 LYPAMEDFQLDLM--VGEGPSARSVKINLSR 153
             P +E   L  +    E PS       LSR
Sbjct: 123 FLPHVESGLLTFIGATTENPSFEVNPALLSR 153


>gi|284007597|emb|CBA73185.1| recombination factor protein RarA [Arsenophonus nasoniae]
          Length = 455

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 94/221 (42%), Gaps = 23/221 (10%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  LE++ GQ    +N K    A   RA  L  ++  GP G GKTTLA+++       
Sbjct: 28  MRPINLEQYIGQQHLLANNKPLARAI--RAGQLHSMILWGPAGTGKTTLAEIIGHYADAA 85

Query: 82  FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
                  TSG   I ++ ++A     L  R +LF+DE+HR +   ++   P +ED  +  
Sbjct: 86  IEKISAVTSGIKEIRESIEIARQNRQLGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVTF 145

Query: 137 M--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           +    E PS       LSR        RV LL +   +   + ++    +        QR
Sbjct: 146 IGATTENPSFELNSALLSR-------ARVYLLKSLANEEIAMVLQQAMAD-------SQR 191

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
           G     + + D+    IA    G  R A  LL  + D AE+
Sbjct: 192 GYGGQKIILPDDTRDMIAQLVNGDARRALNLLEMMVDMAEI 232


>gi|15609696|ref|NP_217075.1| recombination factor protein RarA [Mycobacterium tuberculosis
           H37Rv]
 gi|15842097|ref|NP_337134.1| recombination factor protein RarA [Mycobacterium tuberculosis
           CDC1551]
 gi|148662398|ref|YP_001283921.1| recombination factor protein RarA [Mycobacterium tuberculosis
           H37Ra]
 gi|148823755|ref|YP_001288509.1| recombination factor protein RarA [Mycobacterium tuberculosis F11]
 gi|167968830|ref|ZP_02551107.1| recombination factor protein RarA [Mycobacterium tuberculosis
           H37Ra]
 gi|215404508|ref|ZP_03416689.1| recombination factor protein RarA [Mycobacterium tuberculosis
           02_1987]
 gi|215412332|ref|ZP_03421092.1| recombination factor protein RarA [Mycobacterium tuberculosis
           94_M4241A]
 gi|215446810|ref|ZP_03433562.1| recombination factor protein RarA [Mycobacterium tuberculosis T85]
 gi|218754298|ref|ZP_03533094.1| recombination factor protein RarA [Mycobacterium tuberculosis GM
           1503]
 gi|253798360|ref|YP_003031361.1| hypothetical protein TBMG_01413 [Mycobacterium tuberculosis KZN
           1435]
 gi|254232680|ref|ZP_04926007.1| conserved hypothetical alanine leucine valine rich protein
           [Mycobacterium tuberculosis C]
 gi|254551610|ref|ZP_05142057.1| recombination factor protein RarA [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|289553651|ref|ZP_06442861.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis KZN 605]
 gi|289746351|ref|ZP_06505729.1| recombination factor protein RarA [Mycobacterium tuberculosis
           02_1987]
 gi|289758688|ref|ZP_06518066.1| recombination factor protein RarA [Mycobacterium tuberculosis T85]
 gi|289762729|ref|ZP_06522107.1| conserved hypothetical alanine leucine valine rich protein
           [Mycobacterium tuberculosis GM 1503]
 gi|294994330|ref|ZP_06800021.1| recombination factor protein RarA [Mycobacterium tuberculosis 210]
 gi|297635170|ref|ZP_06952950.1| recombination factor protein RarA [Mycobacterium tuberculosis KZN
           4207]
 gi|297732162|ref|ZP_06961280.1| recombination factor protein RarA [Mycobacterium tuberculosis KZN
           R506]
 gi|298526033|ref|ZP_07013442.1| conserved hypothetical alanine leucine valine rich protein
           [Mycobacterium tuberculosis 94_M4241A]
 gi|306776833|ref|ZP_07415170.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis SUMu001]
 gi|306780598|ref|ZP_07418935.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis SUMu002]
 gi|306785361|ref|ZP_07423683.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis SUMu003]
 gi|306789961|ref|ZP_07428283.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis SUMu004]
 gi|306794041|ref|ZP_07432343.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis SUMu005]
 gi|306798440|ref|ZP_07436742.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis SUMu006]
 gi|306804319|ref|ZP_07440987.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis SUMu008]
 gi|306807642|ref|ZP_07444310.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis SUMu007]
 gi|306969843|ref|ZP_07482504.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis SUMu009]
 gi|306972948|ref|ZP_07485609.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis SUMu010]
 gi|307080659|ref|ZP_07489829.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis SUMu011]
 gi|307085246|ref|ZP_07494359.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis SUMu012]
 gi|313659496|ref|ZP_07816376.1| recombination factor protein RarA [Mycobacterium tuberculosis KZN
           V2475]
 gi|2496491|sp|Q50739|Y2559_MYCTU RecName: Full=Uncharacterized AAA domain-containing protein
           Rv2559c/MT2636
 gi|1460081|emb|CAB01045.1| CONSERVED HYPOTHETICAL ALANINE LEUCINE VALINE RICH PROTEIN
           [Mycobacterium tuberculosis H37Rv]
 gi|13882379|gb|AAK46948.1| ATPase, AAA family [Mycobacterium tuberculosis CDC1551]
 gi|124601739|gb|EAY60749.1| conserved hypothetical alanine leucine valine rich protein
           [Mycobacterium tuberculosis C]
 gi|148506550|gb|ABQ74359.1| conserved hypothetical alanine,leucine and valine rich protein
           [Mycobacterium tuberculosis H37Ra]
 gi|148722282|gb|ABR06907.1| conserved alanine, leucine and valine rich protein [Mycobacterium
           tuberculosis F11]
 gi|253319863|gb|ACT24466.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis KZN 1435]
 gi|289438283|gb|EFD20776.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis KZN 605]
 gi|289686879|gb|EFD54367.1| recombination factor protein RarA [Mycobacterium tuberculosis
           02_1987]
 gi|289710235|gb|EFD74251.1| conserved hypothetical alanine leucine valine rich protein
           [Mycobacterium tuberculosis GM 1503]
 gi|289714252|gb|EFD78264.1| recombination factor protein RarA [Mycobacterium tuberculosis T85]
 gi|298495827|gb|EFI31121.1| conserved hypothetical alanine leucine valine rich protein
           [Mycobacterium tuberculosis 94_M4241A]
 gi|308214760|gb|EFO74159.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis SUMu001]
 gi|308326532|gb|EFP15383.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis SUMu002]
 gi|308329953|gb|EFP18804.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis SUMu003]
 gi|308333570|gb|EFP22421.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis SUMu004]
 gi|308337597|gb|EFP26448.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis SUMu005]
 gi|308341263|gb|EFP30114.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis SUMu006]
 gi|308345964|gb|EFP34815.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis SUMu007]
 gi|308349070|gb|EFP37921.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis SUMu008]
 gi|308352653|gb|EFP41504.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis SUMu009]
 gi|308357638|gb|EFP46489.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis SUMu010]
 gi|308361580|gb|EFP50431.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis SUMu011]
 gi|308365200|gb|EFP54051.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis SUMu012]
 gi|323718832|gb|EGB27988.1| hypothetical protein TMMG_02570 [Mycobacterium tuberculosis
           CDC1551A]
 gi|326904174|gb|EGE51107.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis W-148]
 gi|328458130|gb|AEB03553.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis KZN 4207]
          Length = 452

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 88/184 (47%), Gaps = 38/184 (20%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP +L+E  GQ   +   S L+  +E +      +  V+  GPPG GKTTLA ++++  
Sbjct: 35  MRPASLDEVVGQDHLLAPGSPLRRLVEGS-----GVASVILYGPPGSGKTTLAALISQAT 89

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           G  F + S  + A   ++ A++ N        ++ VLFIDE+HR S   ++ L  A+E  
Sbjct: 90  GRRFEALSA-LSAGVKEVRAVIENSRKALLHGEQTVLFIDEVHRFSKTQQDALLSAVEHR 148

Query: 133 QLDLMVG--EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
            + L+    E PS          F+++A          PL  R  I ++L     ED + 
Sbjct: 149 VVLLVAATTENPS----------FSVVA----------PLLSRSLI-LQLRPLTAEDTRA 187

Query: 191 IVQR 194
           +VQR
Sbjct: 188 VVQR 191


>gi|319410506|emb|CBY90869.1| putative ATPase [Neisseria meningitidis WUE 2594]
          Length = 436

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 66/142 (46%), Gaps = 15/142 (10%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP TL++  GQ   +     L+V +E  K  +     +L  GPPG+GKTTLA+++A+  
Sbjct: 17  LRPHTLDDVVGQEHLIGEGKPLRVAVEGGKPHS-----MLLWGPPGVGKTTLARILAQSF 71

Query: 79  GVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
              F   S        I +A D A +        +LF+DE+HR +   ++   P +E   
Sbjct: 72  NAQFLPVSAVFSGVKDIREAIDKAEIALQQGRATILFVDEVHRFNKAQQDAFLPHVESGL 131

Query: 134 LDLM--VGEGPSARSVKINLSR 153
           L  +    E PS       LSR
Sbjct: 132 LTFIGATTENPSFEVNPALLSR 153


>gi|298368871|ref|ZP_06980189.1| magnesium chelatase, subunit ChlI family [Neisseria sp. oral taxon
           014 str. F0314]
 gi|298282874|gb|EFI24361.1| magnesium chelatase, subunit ChlI family [Neisseria sp. oral taxon
           014 str. F0314]
          Length = 435

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 71/151 (47%), Gaps = 16/151 (10%)

Query: 14  QEDADIS-LLRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           Q DA ++  LRP TL++  GQ   +     L+V +E  K  +     +L  GPPG+GKTT
Sbjct: 8   QPDAPLAERLRPHTLDDVIGQQHLIGEGKPLRVAVEGGKPHS-----MLLWGPPGVGKTT 62

Query: 70  LAQVVARELGVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LA+++A+     F   S        I +A D A +        +LF+DE+HR +   ++ 
Sbjct: 63  LARILAQSFNAQFLPVSAVFSGVKDIREAIDKAEIALQQGRTTILFVDEVHRFNKAQQDA 122

Query: 125 LYPAMEDFQLDLM--VGEGPSARSVKINLSR 153
             P +E   L  +    E PS       LSR
Sbjct: 123 FLPHVESGLLTFIGATTENPSFEVNPALLSR 153


>gi|325144597|gb|EGC66896.1| magnesium chelatase, subunit ChlI family [Neisseria meningitidis
           M01-240013]
          Length = 436

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 66/142 (46%), Gaps = 15/142 (10%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP TL++  GQ   +     L+V +E  K  +     +L  GPPG+GKTTLA+++A+  
Sbjct: 17  LRPHTLDDVVGQEHLIGEGKPLRVAVEGGKPHS-----MLLWGPPGVGKTTLARILAQSF 71

Query: 79  GVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
              F   S        I +A D A +        +LF+DE+HR +   ++   P +E   
Sbjct: 72  NAQFLPVSAVFSGVKDIREAIDKAEIALQQGRATILFVDEVHRFNKAQQDAFLPHVESGL 131

Query: 134 LDLM--VGEGPSARSVKINLSR 153
           L  +    E PS       LSR
Sbjct: 132 LTFIGATTENPSFEVNPALLSR 153


>gi|303232661|ref|ZP_07319346.1| recombination factor protein RarA [Atopobium vaginae PB189-T1-4]
 gi|302481147|gb|EFL44222.1| recombination factor protein RarA [Atopobium vaginae PB189-T1-4]
          Length = 471

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 16/119 (13%)

Query: 22  LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPR L+E++GQ +A    S L+  IE      + +  ++  GP G GKTTLA ++AR  
Sbjct: 34  MRPRNLDEYSGQTQAVGEHSWLRRAIEH-----DTVTSIILYGPSGTGKTTLAHIIARYT 88

Query: 79  GVNFRSTSGPVIAKAGDL-------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
             +  + S  + A   D+       ++ L     R +LF+DEIHR +   ++ L  A+E
Sbjct: 89  HAHVVTMSA-ISATVKDVRDTISTASSRLYTRRQRTILFLDEIHRFNRSQQDALLEAVE 146


>gi|290510640|ref|ZP_06550010.1| ATPase [Klebsiella sp. 1_1_55]
 gi|289777356|gb|EFD85354.1| ATPase [Klebsiella sp. 1_1_55]
          Length = 447

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 63/129 (48%), Gaps = 9/129 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  L ++ GQ    +  K    A +A    L  ++  GPPG GKTTLA+V+AR    +
Sbjct: 20  MRPENLAQYIGQQHLLAPGKPLQRAIEA--GHLHSMILWGPPGTGKTTLAEVIARYASAD 77

Query: 82  FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
                  TSG   I +A + A    N   R +LF+DE+HR +   ++   P +ED  +  
Sbjct: 78  VERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 137

Query: 137 M--VGEGPS 143
           +    E PS
Sbjct: 138 IGATTENPS 146


>gi|152969481|ref|YP_001334590.1| recombination factor protein RarA [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|329998191|ref|ZP_08303003.1| replication-associated recombination protein A [Klebsiella sp. MS
           92-3]
 gi|150954330|gb|ABR76360.1| putative polynucleotide enzyme [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|328538806|gb|EGF64881.1| replication-associated recombination protein A [Klebsiella sp. MS
           92-3]
          Length = 447

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 63/129 (48%), Gaps = 9/129 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  L ++ GQ    +  K    A +A    L  ++  GPPG GKTTLA+V+AR    +
Sbjct: 20  MRPENLAQYIGQQHLLAPGKPLPRAIEA--GHLHSMILWGPPGTGKTTLAEVIARYASAD 77

Query: 82  FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
                  TSG   I +A + A    N   R +LF+DE+HR +   ++   P +ED  +  
Sbjct: 78  VERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 137

Query: 137 M--VGEGPS 143
           +    E PS
Sbjct: 138 IGATTENPS 146


>gi|83749188|ref|ZP_00946190.1| ATPase, AAA family [Ralstonia solanacearum UW551]
 gi|207742684|ref|YP_002259076.1| cog2256 atpase related to the helicase subunit of the holliday
           junction resolvase protein [Ralstonia solanacearum
           IPO1609]
 gi|83724129|gb|EAP71305.1| ATPase, AAA family [Ralstonia solanacearum UW551]
 gi|206594078|emb|CAQ61005.1| probable cog2256 atpase related to the helicase subunit of the
           holliday junction resolvase protein [Ralstonia
           solanacearum IPO1609]
          Length = 435

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 60/118 (50%), Gaps = 15/118 (12%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL+E  GQ     +   L++  ++ K  +     ++F GPPG+GKTTLA++ A   
Sbjct: 17  LRPKTLDEVIGQSHLLGDGKPLRLAFQSGKPHS-----MIFWGPPGVGKTTLARLTATAF 71

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAME 130
              F + S  V +   D+ A +   +         +LF+DEIHR +   ++ L P  E
Sbjct: 72  KCEFIALSA-VFSGVKDIRAAMEQAQQNLSMGKSTILFVDEIHRFNKSQQDALLPYAE 128


>gi|325205964|gb|ADZ01417.1| magnesium chelatase, subunit ChlI family [Neisseria meningitidis
           M04-240196]
          Length = 436

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 66/142 (46%), Gaps = 15/142 (10%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP TL++  GQ   +     L+V +E  K  +     +L  GPPG+GKTTLA+++A+  
Sbjct: 17  LRPHTLDDVVGQEHLIGEGKPLRVAVEGGKPHS-----MLLWGPPGVGKTTLARILAQSF 71

Query: 79  GVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
              F   S        I +A D A +        +LF+DE+HR +   ++   P +E   
Sbjct: 72  NAQFLPVSAVFSGVKDIREAIDKAEIALQQGRATILFVDEVHRFNKAQQDAFLPHVESGL 131

Query: 134 LDLM--VGEGPSARSVKINLSR 153
           L  +    E PS       LSR
Sbjct: 132 LTFIGATTENPSFEVNPALLSR 153


>gi|326318083|ref|YP_004235755.1| AAA ATPase central domain-containing protein [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323374919|gb|ADX47188.1| AAA ATPase central domain protein [Acidovorax avenae subsp. avenae
           ATCC 19860]
          Length = 434

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 59/118 (50%), Gaps = 15/118 (12%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL+E  GQ         L++  ++ K  +     ++F GPPG+GKTTLA++ A   
Sbjct: 17  LRPKTLDEVVGQSHLLGEGKPLRLAFQSGKPHS-----MIFWGPPGVGKTTLARLTATAF 71

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130
              F + S  V +   D+ A +   +         +LF+DEIHR +   ++ L P  E
Sbjct: 72  KCEFIALSA-VFSGVKDIRAAMEQAQQNLAMGKHTILFVDEIHRFNKSQQDALLPYAE 128


>gi|121634950|ref|YP_975195.1| recombination factor protein RarA [Neisseria meningitidis FAM18]
 gi|120866656|emb|CAM10407.1| hypothetical protein NMC1159 [Neisseria meningitidis FAM18]
 gi|325132559|gb|EGC55252.1| magnesium chelatase, subunit ChlI family [Neisseria meningitidis
           M6190]
 gi|325138333|gb|EGC60902.1| magnesium chelatase, subunit ChlI family [Neisseria meningitidis
           ES14902]
          Length = 436

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 66/142 (46%), Gaps = 15/142 (10%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP TL++  GQ   +     L+V +E  K  +     +L  GPPG+GKTTLA+++A+  
Sbjct: 17  LRPHTLDDVVGQEHLIGEGKPLRVAVEGGKPHS-----MLLWGPPGVGKTTLARILAQSF 71

Query: 79  GVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
              F   S        I +A D A +        +LF+DE+HR +   ++   P +E   
Sbjct: 72  NAQFLPVSAVFSGVKDIREAIDKAEIALQQGRATILFVDEVHRFNKAQQDAFLPHVESGL 131

Query: 134 LDLM--VGEGPSARSVKINLSR 153
           L  +    E PS       LSR
Sbjct: 132 LTFIGATTENPSFEVNPALLSR 153


>gi|31793742|ref|NP_856235.1| recombination factor protein RarA [Mycobacterium bovis AF2122/97]
 gi|121638444|ref|YP_978668.1| recombination factor protein RarA [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|215427955|ref|ZP_03425874.1| recombination factor protein RarA [Mycobacterium tuberculosis T92]
 gi|215431517|ref|ZP_03429436.1| recombination factor protein RarA [Mycobacterium tuberculosis
           EAS054]
 gi|219558563|ref|ZP_03537639.1| recombination factor protein RarA [Mycobacterium tuberculosis T17]
 gi|224990938|ref|YP_002645625.1| recombination factor protein [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|260187574|ref|ZP_05765048.1| recombination factor protein RarA [Mycobacterium tuberculosis
           CPHL_A]
 gi|260201686|ref|ZP_05769177.1| recombination factor protein RarA [Mycobacterium tuberculosis T46]
 gi|260205881|ref|ZP_05773372.1| recombination factor protein RarA [Mycobacterium tuberculosis K85]
 gi|289444095|ref|ZP_06433839.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis T46]
 gi|289448208|ref|ZP_06437952.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis CPHL_A]
 gi|289570728|ref|ZP_06450955.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis T17]
 gi|289575267|ref|ZP_06455494.1| recombination factor protein RarA [Mycobacterium tuberculosis K85]
 gi|289751178|ref|ZP_06510556.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis T92]
 gi|289754677|ref|ZP_06514055.1| recombination factor protein RarA [Mycobacterium tuberculosis
           EAS054]
 gi|31619336|emb|CAD94774.1| CONSERVED HYPOTHETICAL ALANINE LEUCINE VALINE RICH PROTEIN
           [Mycobacterium bovis AF2122/97]
 gi|121494092|emb|CAL72570.1| Conserved hypothetical alanine leucine valine rich protein
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|224774051|dbj|BAH26857.1| recombination factor protein [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|289417014|gb|EFD14254.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis T46]
 gi|289421166|gb|EFD18367.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis CPHL_A]
 gi|289539698|gb|EFD44276.1| recombination factor protein RarA [Mycobacterium tuberculosis K85]
 gi|289544482|gb|EFD48130.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis T17]
 gi|289691765|gb|EFD59194.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis T92]
 gi|289695264|gb|EFD62693.1| recombination factor protein RarA [Mycobacterium tuberculosis
           EAS054]
          Length = 452

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 88/184 (47%), Gaps = 38/184 (20%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP +L+E  GQ   +   S L+  +E +      +  V+  GPPG GKTTLA ++++  
Sbjct: 35  MRPASLDEVVGQDHLLAPGSPLRRLVEGS-----GVASVILYGPPGSGKTTLAALISQAT 89

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           G  F + S  + A   ++ A++ N        ++ VLFIDE+HR S   ++ L  A+E  
Sbjct: 90  GRRFEALSA-LSAGVKEVRAVIENSRKALLHGEQTVLFIDEVHRFSKTQQDALLSAVEHR 148

Query: 133 QLDLMVG--EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
            + L+    E PS          F+++A          PL  R  I ++L     ED + 
Sbjct: 149 VVLLVAATTENPS----------FSVVA----------PLLSRSLI-LQLRPLTAEDTRA 187

Query: 191 IVQR 194
           +VQR
Sbjct: 188 VVQR 191


>gi|224826932|ref|ZP_03700031.1| AAA ATPase central domain protein [Lutiella nitroferrum 2002]
 gi|224600919|gb|EEG07103.1| AAA ATPase central domain protein [Lutiella nitroferrum 2002]
          Length = 439

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 84/328 (25%), Positives = 129/328 (39%), Gaps = 61/328 (18%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP +L+E  GQ   +     L++ +E+    +     ++  GPPG+GKTTLA+++A   
Sbjct: 17  LRPTSLDEVIGQPHLIGPGKPLRLAVESKTPHS-----MILWGPPGVGKTTLARILAHSF 71

Query: 79  GVNFRSTSGPV-----IAKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMEDF 132
              F   S        I +A D A  +   + R  +LF+DE+HR +   ++   P +E  
Sbjct: 72  DAEFIPLSAVFSGVKDIREAVDRAQAVLQRDGRHTILFVDEVHRFNKSQQDAFLPYVESG 131

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
            L  +    E PS       LSR  +         + N L D             +D K 
Sbjct: 132 LLTFIGATTENPSFEVNSALLSRAQVY--------VLNALAD-------------DDFKA 170

Query: 191 IVQRG---AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           +  R      L GL   D A   ++  + G  R    LL + R  A   H + I     D
Sbjct: 171 LFARAVASGALPGLTFDDSALATLSGYADGDARRFLNLLEQTRTAASARHVEHI-----D 225

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNF-GGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           A  L                LT+ AR F  GG    + ISA     R +  D    ++ +
Sbjct: 226 ADFL-------------AEVLTVNARRFDKGGDAFYDQISALHKSVRGSSPDGALYWLTR 272

Query: 307 QGFIQRTPR--GRLLMPIAWQHLGIDIP 332
                  PR   R L+ +AW+ +G+  P
Sbjct: 273 MLDGGADPRYLARRLVRMAWEDIGLADP 300


>gi|14349164|dbj|BAB60708.1| Werner helicase interacting protein [Mus musculus]
          Length = 660

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 75/151 (49%), Gaps = 21/151 (13%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75
           +RP TL+++ GQ  A      L+  +EA +     +  ++  GPPG GKTTLA ++A   
Sbjct: 226 MRPDTLQDYIGQSRAVGEETLLRSLLEANE-----IPSLILWGPPGCGKTTLAHIIANNS 280

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPA 128
           ++  + F + S    AK  D+  ++   ++       + +LFIDEIHR +   ++   P 
Sbjct: 281 KKHSIRFVTLSA-TNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPH 339

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLI 157
           +E   + L+    E PS +     LSR  +I
Sbjct: 340 VECGTITLIGATTENPSFQVNAALLSRCRVI 370


>gi|313202726|ref|YP_004041383.1| recombination protein mgsa [Paludibacter propionicigenes WB4]
 gi|312442042|gb|ADQ78398.1| Recombination protein MgsA [Paludibacter propionicigenes WB4]
          Length = 421

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 73/144 (50%), Gaps = 18/144 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL+ + GQ   V   + L+  IE+    +      +  GPPG+GKTTLA+++A +L
Sbjct: 8   LRPQTLDNYIGQKHLVGENAILRKMIESGHVAS-----FILWGPPGVGKTTLAKIIANKL 62

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V +   D+  ++          +   +LFIDEIHR S   ++ L  A+E+
Sbjct: 63  DRPFYTLSA-VTSGVKDVREVIEKAKANRFFSQANPILFIDEIHRFSKSQQDSLLGAVEN 121

Query: 132 FQLDLM--VGEGPSARSVKINLSR 153
             + L+    E PS   +   LSR
Sbjct: 122 GTVTLIGATTENPSFEVITPLLSR 145


>gi|307353132|ref|YP_003894183.1| Replication factor C [Methanoplanus petrolearius DSM 11571]
 gi|307156365|gb|ADN35745.1| Replication factor C [Methanoplanus petrolearius DSM 11571]
          Length = 324

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 94/214 (43%), Gaps = 39/214 (18%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL---- 78
           RP+TL++  GQ E  + LK +++       +L H+LF GP G+GKTT A  +ARE     
Sbjct: 13  RPKTLDDVVGQKEIVARLKSYVKTG-----SLPHLLFTGPAGIGKTTSAVALAREFFGEN 67

Query: 79  -GVNFRSTSGP-------VIAKAGDLA--ALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
             VNFR  +         V  +    A  A +   E + +LF+DE   L+   +  L   
Sbjct: 68  WQVNFRELNASDERGIDVVRNQIKQFARTAPMGGAEFK-ILFLDEADALTNDAQAALRRT 126

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           ME++                    RF L  +      + +P+Q R  +  R    + E +
Sbjct: 127 MENYAY----------------TCRFIL--SCNYSSKIIDPIQSRCAL-YRFRPLDREAV 167

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
              + R AK  GL++T++A   I   ++G  R A
Sbjct: 168 TEELNRIAKTEGLSITEDAMSAIIYVAQGDMRKA 201


>gi|213027867|ref|ZP_03342314.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 316

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP  L ++ GQ   + A   L   IEA       L  ++  GPPG GKTTLA+V+AR  
Sbjct: 20  MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             +       TSG   I +A + A    N   R +LF+DE+HR +   ++   P +ED  
Sbjct: 75  SADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134

Query: 134 LDLM--VGEGPS 143
           +  +    E PS
Sbjct: 135 ITFIGATTENPS 146


>gi|213581061|ref|ZP_03362887.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 430

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP  L ++ GQ   + A   L   IEA       L  ++  GPPG GKTTLA+V+AR  
Sbjct: 20  MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             +       TSG   I +A + A    N   R +LF+DE+HR +   ++   P +ED  
Sbjct: 75  SADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134

Query: 134 LDLM--VGEGPS 143
           +  +    E PS
Sbjct: 135 ITFIGATTENPS 146


>gi|171057447|ref|YP_001789796.1| recombination factor protein RarA [Leptothrix cholodnii SP-6]
 gi|170774892|gb|ACB33031.1| AAA ATPase central domain protein [Leptothrix cholodnii SP-6]
          Length = 447

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 71/145 (48%), Gaps = 15/145 (10%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPRTL+E  GQ   ++A   L+V  E+ +  +     ++  GPPG+GKTTLA+++A   
Sbjct: 31  LRPRTLDEVIGQYDLLDAGKPLRVAFESRQPHS-----MILWGPPGVGKTTLARLMADAF 85

Query: 79  GVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED-- 131
              F   S  +     I +A + A +      R ++F+DE+HR +   ++   P +E   
Sbjct: 86  DAQFVQISAVLGGVKEIREAVEQARVAQAQGRRCIVFVDEVHRFNKSQQDAFLPHVESGL 145

Query: 132 FQLDLMVGEGPSARSVKINLSRFTL 156
           F       E PS       LSR T+
Sbjct: 146 FTFIGATTENPSFEVNSALLSRATV 170


>gi|78047616|ref|YP_363791.1| recombination factor protein RarA [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78036046|emb|CAJ23737.1| putative ATPase [Xanthomonas campestris pv. vesicatoria str. 85-10]
          Length = 457

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 67/137 (48%), Gaps = 14/137 (10%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTLEE  GQ   +   S L+  +E+ +  +     ++  GPPG GKTTLA ++A   
Sbjct: 29  MRPRTLEEMVGQKRLLAPDSALRRAVESGRVHS-----MILWGPPGCGKTTLALLLAHYA 83

Query: 79  GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
              F++ S      P + +    AA       R VLF+DE+HR +   ++   P +E   
Sbjct: 84  DAEFKAISAVLSGLPEVRQVLAEAAQRFAGGRRTVLFVDEVHRFNKAQQDAFLPHIERGT 143

Query: 134 LDLMVGEGPSARSVKIN 150
           + L VG      S ++N
Sbjct: 144 I-LFVGATTENPSFELN 159


>gi|117924970|ref|YP_865587.1| recombination factor protein RarA [Magnetococcus sp. MC-1]
 gi|117608726|gb|ABK44181.1| Recombination protein MgsA [Magnetococcus sp. MC-1]
          Length = 447

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 71/263 (26%), Positives = 113/263 (42%), Gaps = 42/263 (15%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR L E  GQ E     ++  EA  +    +  ++  GPPG GKTT+A+++A ++ + 
Sbjct: 18  MRPRDLAELVGQEELADEGRILHEALCS--GHIPSMILWGPPGCGKTTIARMIATQVTLR 75

Query: 82  FRSTSGPVIAKAGDLAALLTN------LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F S S  V+A   ++  ++        L    +LF+DEIHR +   ++   P +E   + 
Sbjct: 76  FESLSA-VLAGVKEVRLVVDRAREARVLGQGTILFVDEIHRFNKAQQDAFLPYVESGDI- 133

Query: 136 LMVGEGPSARSVKIN---LSRFTLIA-----ATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           +++G      S ++N   LSR  ++          V LL   L D+              
Sbjct: 134 ILIGATTENPSFELNGALLSRCRVVELKPLHEAALVTLLQRALVDQ-------------- 179

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE---VAHAKTITRE 244
                +RG +   LAV  EA   +A  + G  R A  LL    + A    VA    +T E
Sbjct: 180 -----ERGLERYKLAVEPEALQHMAQLAAGDGRYALNLLETFVELAAKSGVARGSQLTLE 234

Query: 245 IADAALLRLA--IDKMGFDQLDL 265
               +L R A   DK G    +L
Sbjct: 235 RLKNSLQRRAALYDKAGDGHYNL 257


>gi|309378598|emb|CBX22776.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 436

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 67/143 (46%), Gaps = 17/143 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP TL++  GQ   +     L+V +E  K  +     +L  GPPG+GKTTLA+++A+  
Sbjct: 17  LRPHTLDDVVGQEHLIGEGKPLRVAVEGGKPHS-----MLLWGPPGVGKTTLARILAQSF 71

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
              F   S  V +   D+   +   E         +LF+DE+HR +   ++   P +E+ 
Sbjct: 72  NAQFLPVSA-VFSGVKDIRGAIDKAEIALQQGRATILFVDEVHRFNKAQQDAFLPYVENG 130

Query: 133 QLDLM--VGEGPSARSVKINLSR 153
            L  +    E PS       LSR
Sbjct: 131 LLTFIGATTENPSFEVNPALLSR 153


>gi|298372246|ref|ZP_06982236.1| ATPase, AAA family [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275150|gb|EFI16701.1| ATPase, AAA family [Bacteroidetes oral taxon 274 str. F0058]
          Length = 421

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 70/144 (48%), Gaps = 18/144 (12%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP++L+ F GQ    ++   L+  IE+       +   +  GPPG+GKTTLA+++A  L
Sbjct: 8   LRPQSLDTFVGQRHLLADGAVLRSMIESGN-----ISSFILWGPPGVGKTTLAKIIANRL 62

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V +   D+  ++   +          +LFIDEIHR S   ++ L  A+E 
Sbjct: 63  QRPFYTLSA-VTSGVKDVREVIEKAKQNRFFNSAPPILFIDEIHRFSKSQQDSLLGAVET 121

Query: 132 --FQLDLMVGEGPSARSVKINLSR 153
             F L     E PS   +   LSR
Sbjct: 122 GIFTLIGATTENPSFEVITPLLSR 145


>gi|255065859|ref|ZP_05317714.1| replication-associated recombination protein A [Neisseria sicca
           ATCC 29256]
 gi|255049770|gb|EET45234.1| replication-associated recombination protein A [Neisseria sicca
           ATCC 29256]
          Length = 437

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 71/151 (47%), Gaps = 16/151 (10%)

Query: 14  QEDADIS-LLRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           Q DA ++  LRP TL++  GQ   +     L+V +E  K  +     +L  GPPG+GKTT
Sbjct: 8   QPDAPLAERLRPHTLDDVIGQQHLIGEGKPLRVAVEGGKPHS-----MLLWGPPGVGKTT 62

Query: 70  LAQVVARELGVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LA+++A+     F   S        I +A D A +        +LF+DE+HR +   ++ 
Sbjct: 63  LARILAQSFNAQFLPVSAVFSGVKDIREAIDKAEIALQQGRATILFVDEVHRFNKAQQDA 122

Query: 125 LYPAMEDFQLDLM--VGEGPSARSVKINLSR 153
             P +E   L  +    E PS       LSR
Sbjct: 123 FLPHVESGLLTFIGATTENPSFEVNPALLSR 153


>gi|261364752|ref|ZP_05977635.1| replication-associated recombination protein A [Neisseria mucosa
           ATCC 25996]
 gi|288567056|gb|EFC88616.1| replication-associated recombination protein A [Neisseria mucosa
           ATCC 25996]
          Length = 437

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 71/151 (47%), Gaps = 16/151 (10%)

Query: 14  QEDADIS-LLRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           Q DA ++  LRP TL++  GQ   +     L+V +E  K  +     +L  GPPG+GKTT
Sbjct: 8   QPDAPLAERLRPHTLDDVIGQQHLIGEGKPLRVAVEGGKPHS-----MLLWGPPGVGKTT 62

Query: 70  LAQVVARELGVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LA+++A+     F   S        I +A D A +        +LF+DE+HR +   ++ 
Sbjct: 63  LARILAQSFNAQFLPVSAVFSGVKDIREAIDKAEIALQQGRATILFVDEVHRFNKAQQDA 122

Query: 125 LYPAMEDFQLDLM--VGEGPSARSVKINLSR 153
             P +E   L  +    E PS       LSR
Sbjct: 123 FLPHVESGLLTFIGATTENPSFEVNPALLSR 153


>gi|206576595|ref|YP_002239455.1| putative DNA recombination-associated ATPase RarA [Klebsiella
           pneumoniae 342]
 gi|288936305|ref|YP_003440364.1| ATPase AAA [Klebsiella variicola At-22]
 gi|206565653|gb|ACI07429.1| putative DNA recombination-associated ATPase RarA [Klebsiella
           pneumoniae 342]
 gi|288891014|gb|ADC59332.1| AAA ATPase central domain protein [Klebsiella variicola At-22]
          Length = 447

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 63/129 (48%), Gaps = 9/129 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  L ++ GQ    +  K    A +A    L  ++  GPPG GKTTLA+V+AR    +
Sbjct: 20  MRPENLAQYIGQQHLLAPGKPLPRAIEA--GHLHSMILWGPPGTGKTTLAEVIARYASAD 77

Query: 82  FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
                  TSG   I +A + A    N   R +LF+DE+HR +   ++   P +ED  +  
Sbjct: 78  VERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 137

Query: 137 M--VGEGPS 143
           +    E PS
Sbjct: 138 IGATTENPS 146


>gi|21108233|gb|AAM36872.1| ATPase [Xanthomonas axonopodis pv. citri str. 306]
          Length = 429

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 16/138 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL+E  GQ   +   S L+  +E+ +  +     ++  GPPG GKTTLA ++A   
Sbjct: 1   MRPRTLDEMVGQKRLLAPDSALRRAVESGRVHS-----MILWGPPGCGKTTLALLLAHYA 55

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDF 132
              F++ S  V++   D+  +L           R VLF+DE+HR +   ++   P +E  
Sbjct: 56  DAEFKAISA-VLSGLPDVRQVLAEAAQRFAGGRRTVLFVDEVHRFNKAQQDAFLPHIERG 114

Query: 133 QLDLMVGEGPSARSVKIN 150
            + L VG      S ++N
Sbjct: 115 TI-LFVGATTENPSFELN 131


>gi|283138944|gb|ADB12547.1| ATPase [uncultured bacterium 9F08]
          Length = 449

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 95/237 (40%), Gaps = 37/237 (15%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRT  EF GQ       K   +A  +    L  ++F GPPG GKTTLA+++A      
Sbjct: 23  MRPRTPAEFFGQQHLLGEGKPLRQAIDS--GNLHSMIFWGPPGTGKTTLARMIAGHGEAQ 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRD-----VLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           F + S  +       AA+    + R      VLF+DE+HR +   ++   P +ED     
Sbjct: 81  FITISAVLSGVKEIRAAVEQARQARQRGQATVLFVDEVHRFNKSQQDAFLPHIED----- 135

Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGL--LTNPLQDRFGIPIRLNFYEIEDLKTIVQ- 193
                            FT I ATT      L N L  R  + + L   +  +++TI+Q 
Sbjct: 136 ---------------GTFTFIGATTENPSFELNNALLSRARVYV-LKSLDSAEIETILQQ 179

Query: 194 ------RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
                 RG     L + D     IA  + G  R A  LL    D AE      I  E
Sbjct: 180 ALTDPERGLGRRPLVLADTLRRRIAEAADGDARRALNLLEIAADLAEPGEGVEIIAE 236


>gi|285018238|ref|YP_003375949.1| ATPase [Xanthomonas albilineans GPE PC73]
 gi|283473456|emb|CBA15961.1| putative atpase protein [Xanthomonas albilineans]
          Length = 457

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 16/138 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP+TLEE  GQ   +   S L+  + A +  +     ++  GPPG GKTTLA ++A+  
Sbjct: 29  MRPQTLEEMVGQKRLLTPSSALRRAVTAGRVHS-----MILWGPPGCGKTTLALLLAQYA 83

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDF 132
              F++ S  V++   D+  +L           R VLF+DE+HR +   ++   P +E  
Sbjct: 84  DAEFKAISA-VLSGLPDVRLVLAEAAQRFADGRRTVLFVDEVHRFNKAQQDAFLPHIERG 142

Query: 133 QLDLMVGEGPSARSVKIN 150
            + L VG      S ++N
Sbjct: 143 NI-LFVGATTENPSFELN 159


>gi|52081232|ref|YP_080023.1| recombination factor protein RarA [Bacillus licheniformis ATCC
           14580]
 gi|52786612|ref|YP_092441.1| recombination factor protein RarA [Bacillus licheniformis ATCC
           14580]
 gi|52004443|gb|AAU24385.1| Replication factor C conserved domain [Bacillus licheniformis ATCC
           14580]
 gi|52349114|gb|AAU41748.1| YrvN [Bacillus licheniformis ATCC 14580]
          Length = 421

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 6/120 (5%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  +EE  GQ       K+     +A+   L  ++  GPPG+GKT++A  +A    + 
Sbjct: 8   MRPTKIEEVLGQDHLVGEGKIIHRMVQAKH--LSSMILYGPPGIGKTSIATAIAGSTSIA 65

Query: 82  FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
           FR  +  VI    D+ A+     +  + +L +DE+HRL    ++ L P +E+  + +M+G
Sbjct: 66  FRKLNA-VINNKKDMEAIAAEAKMSGQVILILDEVHRLDKGKQDFLLPYLENGMI-IMIG 123


>gi|238893953|ref|YP_002918687.1| recombination factor protein RarA [Klebsiella pneumoniae
           NTUH-K2044]
 gi|238546269|dbj|BAH62620.1| putative polynucleotide enzyme [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 447

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 63/129 (48%), Gaps = 9/129 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  L ++ GQ    +  K    A +A    L  ++  GPPG GKTTLA+V+AR    +
Sbjct: 20  MRPENLAQYIGQQHLLAPGKPLPRAIEA--GHLHSMILWGPPGTGKTTLAEVIARYASAD 77

Query: 82  FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
                  TSG   I +A + A    N   R +LF+DE+HR +   ++   P +ED  +  
Sbjct: 78  VERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 137

Query: 137 M--VGEGPS 143
           +    E PS
Sbjct: 138 IGATTENPS 146


>gi|319644801|ref|ZP_07999034.1| YrvN protein [Bacillus sp. BT1B_CT2]
 gi|317392610|gb|EFV73404.1| YrvN protein [Bacillus sp. BT1B_CT2]
          Length = 421

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 6/120 (5%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  +EE  GQ       K+     +A+   L  ++  GPPG+GKT++A  +A    + 
Sbjct: 8   MRPTKIEEVLGQDHLVGEGKIIHRMVQAKH--LSSMILYGPPGIGKTSIATAIAGSTSIA 65

Query: 82  FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
           FR  +  VI    D+ A+     +  + +L +DE+HRL    ++ L P +E+  + +M+G
Sbjct: 66  FRKLNA-VINNKKDMEAIAAEAKMSGQVILILDEVHRLDKGKQDFLLPYLENGMI-IMIG 123


>gi|296117814|ref|ZP_06836397.1| replication-associated recombination protein A [Corynebacterium
           ammoniagenes DSM 20306]
 gi|295969045|gb|EFG82287.1| replication-associated recombination protein A [Corynebacterium
           ammoniagenes DSM 20306]
          Length = 448

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 65/130 (50%), Gaps = 11/130 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L+E  GQ    +  K      +   EA   V+  GPPG GKTT+A ++A  +G N
Sbjct: 1   MRPQQLDEVLGQDHLLAPGKPLRRLVEGSGEA--SVILYGPPGTGKTTIASLIASAMGQN 58

Query: 82  FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F   S  + +    +  ++T+         R VLFIDE+HR S   ++ L  A+E+  + 
Sbjct: 59  FVGLSA-LDSGVKQVREVITHARQEAIRGVRTVLFIDEVHRFSKTQQDALLAAVENRTVL 117

Query: 136 LMVG--EGPS 143
           L+    E PS
Sbjct: 118 LVAATTENPS 127


>gi|295675840|ref|YP_003604364.1| AAA ATPase central domain protein [Burkholderia sp. CCGE1002]
 gi|295435683|gb|ADG14853.1| AAA ATPase central domain protein [Burkholderia sp. CCGE1002]
          Length = 437

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 81/294 (27%), Positives = 130/294 (44%), Gaps = 54/294 (18%)

Query: 22  LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPR ++E  GQ         L+V  E+ +A +     ++  GPPG+GKTTLA+++A   
Sbjct: 15  LRPRNIDEVIGQSHLLGPNKPLRVAFESGEAHS-----MILWGPPGVGKTTLARLMADAF 69

Query: 79  GVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
              F + S  +     I +A + A +      + ++F+DE+HR +   ++   P +E   
Sbjct: 70  DAQFIALSAVLSGVKDIREAVETAQIHRANGHQTLVFVDEVHRFNKSQQDAFLPHVES-G 128

Query: 134 LDLMVGEGPSARSVKIN---LSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           L + VG      S ++N   LSR    AA   +  LT+  Q                 + 
Sbjct: 129 LFVFVGATTENPSFEVNSALLSR----AAVYVLKSLTDDEQ-----------------RE 167

Query: 191 IVQRGAK-LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
           +++R  K L GL  TDEA   +   + G  R   +LL  +   A  A A+  T EI D A
Sbjct: 168 LLERAQKELGGLTFTDEARTALIGSADGDGR---KLLNNLEIVARAA-AQQKTTEI-DGA 222

Query: 250 LLRLAI-------DKMG---FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
           LL  A+       DK G   +DQ+   + ++   N  G       +  G ++PR
Sbjct: 223 LLGSALAENLRRFDKGGDAFYDQISALHKSVRGSNPDGALYWFCRMLDGGADPR 276


>gi|160900791|ref|YP_001566373.1| recombination factor protein RarA [Delftia acidovorans SPH-1]
 gi|160366375|gb|ABX37988.1| AAA ATPase central domain protein [Delftia acidovorans SPH-1]
          Length = 434

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 59/118 (50%), Gaps = 15/118 (12%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL+E  GQ         L++  ++ K  +     ++F GPPG+GKTTLA++ A   
Sbjct: 17  LRPKTLDEVVGQSHLLGEGKPLRLAFQSGKPHS-----MIFWGPPGVGKTTLARLTATAF 71

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130
              F + S  V +   D+ A +   +         +LF+DEIHR +   ++ L P  E
Sbjct: 72  KCEFIALSA-VFSGVKDIRAAMEQAQQNLAMGRHTILFVDEIHRFNKSQQDALLPYAE 128


>gi|288800898|ref|ZP_06406355.1| ATPase, AAA family [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332359|gb|EFC70840.1| ATPase, AAA family [Prevotella sp. oral taxon 299 str. F0039]
          Length = 425

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 49/146 (33%), Positives = 72/146 (49%), Gaps = 21/146 (14%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP +LEE+ GQ   +   + L+  I++       +   +  GPPG+GKTTLA +++  +
Sbjct: 9   LRPNSLEEYVGQQHIIGKGAPLRRIIDSK----HGVPSFILWGPPGVGKTTLATIISHTI 64

Query: 79  GVNFRS----TSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
            V F +    TSG      VI KA        N     +LFIDEIHR S   ++ L  A+
Sbjct: 65  DVPFYTLSAVTSGVKEVREVIDKATKERFFSNNAP---ILFIDEIHRFSKSQQDSLLGAV 121

Query: 130 EDFQLDLM--VGEGPSARSVKINLSR 153
           E   + L+    E PS   ++  LSR
Sbjct: 122 EKGVVTLIGATTENPSFEVIRPLLSR 147


>gi|296109834|ref|YP_003616783.1| Replication factor C [Methanocaldococcus infernus ME]
 gi|295434648|gb|ADG13819.1| Replication factor C [Methanocaldococcus infernus ME]
          Length = 749

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 55/110 (50%), Gaps = 25/110 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81
           RP+TL+E  GQ E    LK ++     + +++ H+LF GPPG+GKTT A  +AR+L G N
Sbjct: 10  RPKTLDEIVGQEEIVKRLKNYV-----KRKSMPHLLFSGPPGVGKTTAALCLARDLFGEN 64

Query: 82  FR----------STSGPVIAKAG---------DLAALLTNLEDRDVLFID 112
           +R          S   P++ K           +L  L  N  D D+ + D
Sbjct: 65  WRENFLELNASVSKDTPILVKINGEVKRTTFAELDKLYFNERDGDISYKD 114


>gi|126736633|ref|ZP_01752373.1| ATPase, AAA family protein [Roseobacter sp. CCS2]
 gi|126713946|gb|EBA10817.1| ATPase, AAA family protein [Roseobacter sp. CCS2]
          Length = 436

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 90/187 (48%), Gaps = 26/187 (13%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L E  GQ +               + +L  ++F GPPG+GKTT+A+++A E  ++
Sbjct: 23  LRPKALSEVIGQQQVLGADAPL--GTMLSSGSLSSLIFWGPPGVGKTTIARLLADETDLH 80

Query: 82  FRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           F   S      P + K  + A +        +LF+DEIHR +   ++   P MED  + L
Sbjct: 81  FVQISAIFTGVPDLRKVFEAAKMRRQNGKGTLLFVDEIHRFNKAQQDGFLPYMEDGTI-L 139

Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA 196
           +VG      S ++N +    + + ++V +LT           RL+   ++DL+ + QR  
Sbjct: 140 LVGATTENPSFELNAA----VLSRSQVFILT-----------RLD---LKDLELLAQRAE 181

Query: 197 KLTGLAV 203
           K  G A+
Sbjct: 182 KELGKAL 188


>gi|37525550|ref|NP_928894.1| recombination factor protein RarA [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36784978|emb|CAE13896.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 447

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 9/129 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP TLE++ GQ    +  K    A   RA  L  ++  GPPG GKTTLA+++      +
Sbjct: 20  MRPMTLEQYIGQRHLLAEGKPLPRAI--RAGQLHSMILWGPPGTGKTTLAEIIGHYAQAD 77

Query: 82  FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
                  TSG   I ++ + A    N   R +LF+DE+HR +   ++   P +ED  +  
Sbjct: 78  VERISAVTSGIKEIRESIEKARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 137

Query: 137 M--VGEGPS 143
           +    E PS
Sbjct: 138 IGATTENPS 146


>gi|296120806|ref|YP_003628584.1| ATPase AAA [Planctomyces limnophilus DSM 3776]
 gi|296013146|gb|ADG66385.1| AAA ATPase central domain protein [Planctomyces limnophilus DSM
           3776]
          Length = 432

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 115/267 (43%), Gaps = 53/267 (19%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKAR----AEALDHVLFVGPPGLGKTTLAQVVARE 77
           +RPR L EF GQ        V  E    R    A+ +  V+F GPPG+GKTTLA+++A+ 
Sbjct: 22  MRPRNLNEFIGQSH------VLGEGTLLRRMLIADRIHSVVFYGPPGVGKTTLAELIAKS 75

Query: 78  -----LGVNFRSTSGPVIAKAGDLA-ALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
                + +N  +T    + +A D +   L +   + +LF+DE+H  +   + +L P +E 
Sbjct: 76  SKRRFIALNAAATGVKELREALDESRERLKSSGTKTLLFVDELHHFNKQQQNVLLPDVEQ 135

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL--LTNPLQDRFGIPIRLNFYEIEDLK 189
                                  +L+AATT      L  PL  R  I   L     E++K
Sbjct: 136 --------------------GVVSLVAATTANPFFALIAPLLSRSQI-FELKPLSTEEIK 174

Query: 190 TIVQ-------RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT-- 240
            +++       RG     L V +E    +A  S G  R   R L  +    E   ++   
Sbjct: 175 AVLRQALSDETRGYGQKNLKVPEEVFDFLAASSDGDAR---RALLALEIAVESLDSRVLE 231

Query: 241 ITREIADAALLRLAI--DKMGFDQLDL 265
           +T EIA  +L + AI  DK G D  D+
Sbjct: 232 LTLEIAQESLQKKAIRYDKSGDDHYDV 258


>gi|294954392|ref|XP_002788145.1| werner helicase interacting protein, putative [Perkinsus marinus
           ATCC 50983]
 gi|239903360|gb|EER19941.1| werner helicase interacting protein, putative [Perkinsus marinus
           ATCC 50983]
          Length = 622

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 65/135 (48%), Gaps = 20/135 (14%)

Query: 43  FIEAAKARAEALDH------VLFVGPPGLGKTTLAQVVAREL---GVNFRSTS-GPVIAK 92
           + EA    A  + H      ++F GPPG GKTTLAQ++ R L   G+ +R T    V A 
Sbjct: 152 YYEALSQSAATISHHPTVPSMIFWGPPGCGKTTLAQLLCRSLTQSGLPWRHTKLSAVNAG 211

Query: 93  AGDLAALLTNLEDRD--------VLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGP 142
             D+   +   E  +        +LF+DEIHR +   ++ L P +E   L L+    E P
Sbjct: 212 VNDVGLEIPKAESMEGKVTISGTLLFLDEIHRFNKAQQDALLPHVESGTLTLIGATTENP 271

Query: 143 SARSVKINLSRFTLI 157
           S +  +  +SR  +I
Sbjct: 272 SFQCNRALVSRCQVI 286


>gi|332638473|ref|ZP_08417336.1| recombination factor protein RarA [Weissella cibaria KACC 11862]
          Length = 428

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 52/110 (47%), Gaps = 3/110 (2%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRT+EE  GQ       K+      A+   L  ++  GPPG GKT++A  +A      
Sbjct: 9   MRPRTIEEVVGQQHLVGEGKIIHRMVTAKM--LSSMILYGPPGTGKTSIASAIAGSTKYA 66

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           FR  +    +K    + A    +    VL +DEIHRL    ++ L P +E
Sbjct: 67  FRILNAATDSKKDLQIVAEEAKMSGTVVLLLDEIHRLDKTKQDFLLPHLE 116


>gi|255039465|ref|YP_003090086.1| AAA ATPase central domain-containing protein [Dyadobacter
           fermentans DSM 18053]
 gi|254952221|gb|ACT96921.1| AAA ATPase central domain protein [Dyadobacter fermentans DSM
           18053]
          Length = 423

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 46/126 (36%), Positives = 67/126 (53%), Gaps = 7/126 (5%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPRTL++F GQ E     K  +  A  +  A+  ++F GPPG+GKTTLA ++A      
Sbjct: 12  LRPRTLDDFVGQ-EKLLGPKGPLRRAILQ-NAIPSMIFWGPPGVGKTTLALLIAETTKRQ 69

Query: 82  FRSTSGPVIAKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137
           F + S  + +   DL  +L         +LFIDEIHR +   ++ L  A+E  Q+ L+  
Sbjct: 70  FYNLSA-ISSGVKDLREVLARPSGLFPAILFIDEIHRYNKSQQDALLGAVEKGQVTLIGA 128

Query: 138 VGEGPS 143
             E PS
Sbjct: 129 TTENPS 134


>gi|85706692|ref|ZP_01037784.1| ATPase, AAA family protein [Roseovarius sp. 217]
 gi|85668750|gb|EAQ23619.1| ATPase, AAA family protein [Roseovarius sp. 217]
          Length = 435

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 76/151 (50%), Gaps = 19/151 (12%)

Query: 22  LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPR L +  GQ +     + L V + +      +L  ++F GPPG+GKTT+A+++A E 
Sbjct: 24  LRPRRLTDVIGQDQVLGPEAPLGVMLASG-----SLSSLVFWGPPGVGKTTIARLLADET 78

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDF 132
            ++F   S  +     +L  +    + R       +LF+DEIHR +   ++   P MED 
Sbjct: 79  DLHFIQISA-IFTGVPELRKVFEEAKHRRTQGRGTLLFVDEIHRFNKAQQDGFLPHMEDG 137

Query: 133 QLDLMVGEGPSARSVKIN---LSRFTLIAAT 160
            + L+VG      S ++N   LSR  ++  T
Sbjct: 138 TI-LLVGATTENPSFELNAALLSRAQVLVLT 167


>gi|291281895|ref|YP_003498713.1| Replication-associated recombination protein A [Escherichia coli
           O55:H7 str. CB9615]
 gi|290761768|gb|ADD55729.1| Replication-associated recombination protein A [Escherichia coli
           O55:H7 str. CB9615]
          Length = 447

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 63/129 (48%), Gaps = 9/129 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  L ++ GQ    +  K    A +A    L  ++  GPPG GKTTLA+V+AR    +
Sbjct: 20  MRPENLAQYIGQQHLLAAGKPLPRAIEA--GYLHSMILWGPPGTGKTTLAEVIARYANAD 77

Query: 82  FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
                  TSG   I +A + A    N   R +LF+DE+HR +   ++   P +ED  +  
Sbjct: 78  VERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 137

Query: 137 M--VGEGPS 143
           +    E PS
Sbjct: 138 IGATTENPS 146


>gi|213418910|ref|ZP_03351976.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 235

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 15/132 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP  L ++ GQ   + A   L   IEA       L  ++  GPPG GKTTLA+V+AR  
Sbjct: 20  MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             +       TSG   I +A + A    N   R +LF+DE+HR +   ++   P +ED  
Sbjct: 75  SADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134

Query: 134 LDLM--VGEGPS 143
           +  +    E PS
Sbjct: 135 ITFIGATTENPS 146


>gi|212709768|ref|ZP_03317896.1| hypothetical protein PROVALCAL_00816 [Providencia alcalifaciens DSM
           30120]
 gi|212687579|gb|EEB47107.1| hypothetical protein PROVALCAL_00816 [Providencia alcalifaciens DSM
           30120]
          Length = 447

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 71/147 (48%), Gaps = 11/147 (7%)

Query: 6   GLLSRNVSQEDAD--ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           G LS + SQ +     + +RP TLE++ GQ    +  K    A   RA  L  ++  GPP
Sbjct: 2   GNLSLDFSQNEFQPLAARMRPETLEQYIGQKHLLAEGKPLPRAI--RAGHLHSMILWGPP 59

Query: 64  GLGKTTLAQVVARELGVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
           G GKTTLA+V+      +       TSG   I ++ + A    +   R +LF+DE+HR +
Sbjct: 60  GTGKTTLAEVIGHYAQADIERISAVTSGIKEIRESIEKARQNLSAGRRTILFVDEVHRFN 119

Query: 119 IIVEEILYPAMEDFQLDLM--VGEGPS 143
              ++   P +ED  +  +    E PS
Sbjct: 120 KSQQDAFLPHIEDGTITFIGATTENPS 146


>gi|156382458|ref|XP_001632570.1| predicted protein [Nematostella vectensis]
 gi|156219628|gb|EDO40507.1| predicted protein [Nematostella vectensis]
          Length = 432

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 74/158 (46%), Gaps = 34/158 (21%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP +LE++ GQ +   N   L+  +EA +  +     ++  GPPG GKTTLA +VA   
Sbjct: 1   MRPTSLEDYVGQEQVLGNSCLLRTLLEANEVPS-----MVLWGPPGCGKTTLAHIVAN-- 53

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED-----------------RDVLFIDEIHRLSIIV 121
             N R T+     +   L+A  + + D                 + +LF+DEIHR +   
Sbjct: 54  --NARKTT---TTRFVTLSATTSGINDIKEVVKVAKNEQQMFRRKTILFVDEIHRFNKTQ 108

Query: 122 EEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLI 157
           ++   P +E+  + L+    E PS +     LSR  +I
Sbjct: 109 QDTFLPHVENGTITLIGATTENPSFQLNTALLSRCRVI 146


>gi|118086469|ref|XP_418979.2| PREDICTED: similar to Werner helicase interacting protein 1 isoform
           2 [Gallus gallus]
          Length = 562

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 78/151 (51%), Gaps = 21/151 (13%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75
           LRP TL ++ GQ   + A + L+  +E+ +     +  ++  GPPG GKTTLA ++A   
Sbjct: 127 LRPDTLRDYVGQERVLGAHTLLRSLLESHE-----IPSLILWGPPGCGKTTLAHIIANSS 181

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPA 128
           ++ G+ F + S    AK  D+  +++  ++       + +LFIDEIHR +   ++   P 
Sbjct: 182 KKKGMRFVTLSA-TSAKTNDVRDVISQAQNEKRLFKRKTILFIDEIHRFNKSQQDTFLPH 240

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLI 157
           +E   + L+    E PS +     LSR  +I
Sbjct: 241 VECGTVTLIGATTENPSFQVNAALLSRCRVI 271


>gi|229013617|ref|ZP_04170748.1| hypothetical protein bmyco0001_40250 [Bacillus mycoides DSM 2048]
 gi|228747676|gb|EEL97548.1| hypothetical protein bmyco0001_40250 [Bacillus mycoides DSM 2048]
          Length = 428

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 86/330 (26%), Positives = 130/330 (39%), Gaps = 65/330 (19%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  ++E  GQ       K+     +A       ++  GPPG GKT++A  +A   G  
Sbjct: 9   MRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAIAGSTGTL 66

Query: 82  FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
           FR  +  V     D+  ++    +    VL +DE+HRL    ++ L P +E   L     
Sbjct: 67  FRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLL----- 120

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEI----ED-----LK 189
                          TLI ATT     +NP       I  R   +E+    ED     LK
Sbjct: 121 ---------------TLIGATT-----SNPFHAINSAIRSRCQIFELHALTEDDILIGLK 160

Query: 190 TIVQRGAKLTG---LAVTDEAACEIAMRSRGTPRIAGRLLRR--VRDFAEVAHAKTITRE 244
             ++   K  G   + VTDEA    A  S G  R A   L    +  F     A  IT E
Sbjct: 161 RALEDKEKGLGEYDVTVTDEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLE 220

Query: 245 IADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           IA+  L + +   DK G    D+  L+   ++  G  V              A+  L   
Sbjct: 221 IAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDVNA------------ALHYLAR- 265

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
            +I+ G +Q    GR L+ +A++ +G+  P
Sbjct: 266 -LIEAGDLQSI--GRRLLIMAYEDIGLASP 292


>gi|209695310|ref|YP_002263239.1| recombination factor protein RarA [Aliivibrio salmonicida LFI1238]
 gi|208009262|emb|CAQ79528.1| conserevd hypothetical protein [Aliivibrio salmonicida LFI1238]
          Length = 448

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 96/234 (41%), Gaps = 45/234 (19%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP+ +E++ GQ   +     L+  +EA +     +  ++  GPPG GKTTLA+V A   
Sbjct: 21  MRPQNIEQYIGQQHLLAVGKPLRRALEAGQ-----IHSMILWGPPGTGKTTLAEVAANYA 75

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDF 132
                  S  V +   D+ A +   ++      R +LF+DE+HR +   ++   P +E+ 
Sbjct: 76  NAEVERVSA-VTSGVKDIRAAIDKAKENQTTGRRTILFVDEVHRFNKSQQDAFLPHIEN- 133

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGL--LTNPLQDRFGIPIRLNFYEIEDLKT 190
                                 T I ATT      L N L  R  +  +L   E +D+  
Sbjct: 134 -------------------GTITFIGATTENPSFELNNALLSRARV-YKLKSLEKQDIVQ 173

Query: 191 IVQ-------RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
           I++       RG       + D+   ++A    G  R++   L  + D AE  H
Sbjct: 174 IIEQALTDKNRGLNDDNFVLPDDVKLQLADLVSGDARMSLNYLELLHDMAEENH 227


>gi|190574295|ref|YP_001972140.1| recombination factor protein RarA [Stenotrophomonas maltophilia
           K279a]
 gi|190012217|emb|CAQ45840.1| putative ATPase [Stenotrophomonas maltophilia K279a]
          Length = 453

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 67/137 (48%), Gaps = 14/137 (10%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL+E  GQ   +   S L+  +E+ +  +     ++  GPPG GKTTLA ++A   
Sbjct: 29  MRPRTLDEMVGQKRLLAPDSALRRAVESGRVHS-----MILWGPPGCGKTTLALLLAEYA 83

Query: 79  GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
              FR+ S      P + +    AA       R VLF+DE+HR +   ++   P +E   
Sbjct: 84  DAEFRAISAVLSGLPEVRQVLAEAAQRFAEGRRTVLFVDEVHRFNKAQQDAFLPHIERGT 143

Query: 134 LDLMVGEGPSARSVKIN 150
           + L VG      S ++N
Sbjct: 144 I-LFVGATTENPSFELN 159


>gi|160871530|ref|ZP_02061662.1| DNA-dependant ATPase [Rickettsiella grylli]
 gi|159120329|gb|EDP45667.1| DNA-dependant ATPase [Rickettsiella grylli]
          Length = 434

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 72/152 (47%), Gaps = 14/152 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L++F GQ       K    A       L  ++  GPPG GKTTLAQ++A  +   
Sbjct: 15  LRPQHLDQFFGQAHLLGPQKPLRRAL--LNNQLHSMILWGPPGTGKTTLAQLMAHHIQAK 72

Query: 82  FRSTSG-----PVIAKAGD--LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F S S        I +  D   + + T+   + + F+DEIHR +   ++ L P +E   L
Sbjct: 73  FESLSALQSGVKEIRQLADRIKSQMNTHQPQKTICFVDEIHRFNKSQQDSLLPFVES-GL 131

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
            +++G      S +IN      + + TRV +L
Sbjct: 132 FILIGATTENPSFEIN----NALLSRTRVYVL 159


>gi|266624899|ref|ZP_06117834.1| replication-associated recombination protein A [Clostridium
           hathewayi DSM 13479]
 gi|288863218|gb|EFC95516.1| replication-associated recombination protein A [Clostridium
           hathewayi DSM 13479]
          Length = 440

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 81/171 (47%), Gaps = 18/171 (10%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           S LRP  LEEF GQ       KV         + +  ++F GPPG+GKTTLA+++A    
Sbjct: 18  SRLRPTGLEEFVGQKHLLGEGKVLRRIIDQ--DMVCSMIFWGPPGVGKTTLARIIANRTK 75

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
            +F   S  V +   ++  ++   E       R ++F+DEIHR +   ++   P +E   
Sbjct: 76  ASFVDFSA-VTSGIKEIKEVMAQAERDRHMGLRTLVFVDEIHRFNKAQQDAFLPYVEKGS 134

Query: 134 LDLMVGEGPSARSVKIN---LSR---FTLIAATTR--VGLLTNPLQDRFGI 176
           + +++G      S +IN   LSR   F L A  T   V LL + L    G+
Sbjct: 135 I-ILIGATTENPSFEINAALLSRCKVFVLQALQTDDLVILLHHALTSPLGL 184


>gi|303257968|ref|ZP_07343977.1| magnesium chelatase, subunit ChlI family [Burkholderiales bacterium
           1_1_47]
 gi|302859311|gb|EFL82393.1| magnesium chelatase, subunit ChlI family [Burkholderiales bacterium
           1_1_47]
          Length = 484

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 72/144 (50%), Gaps = 12/144 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+T++E  GQ       K  + +A   A     +L+ GPPG+GKTTLA+++A   G+ 
Sbjct: 42  LRPKTIDEVVGQKHLLGPGKP-LRSAFENAHPHSMILW-GPPGVGKTTLARLMADAFGLP 99

Query: 82  FRSTSGPVIAKAGDL-AALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAMED--F 132
           F S S  V+    D+  A+     +R+      V+F+DE+HR S   ++   P +E   F
Sbjct: 100 FISISA-VLGGVKDIRDAVEKATANREKTGRSTVVFVDEVHRFSKSQQDAFLPHVESGLF 158

Query: 133 QLDLMVGEGPSARSVKINLSRFTL 156
                  E PS   +   LSR T+
Sbjct: 159 TFIGATTENPSFEVISALLSRSTV 182


>gi|170747937|ref|YP_001754197.1| recombination factor protein RarA [Methylobacterium radiotolerans
           JCM 2831]
 gi|170654459|gb|ACB23514.1| AAA ATPase central domain protein [Methylobacterium radiotolerans
           JCM 2831]
          Length = 447

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 61/130 (46%), Gaps = 11/130 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+TL E  GQ              + R   L  ++F GPPG GKTT+A+++A+   ++
Sbjct: 32  LRPQTLAEVVGQEHLTGEGGALTRLLRGRT--LGSLIFWGPPGTGKTTVARLLAQGTDLH 89

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F   S  + +   DL  +      R       +LF+DEIHR +    +   P MED  + 
Sbjct: 90  FEQISA-IFSGVPDLRKVFEAARKRRATGQGTLLFVDEIHRFNRAQLDAFLPVMEDGTVT 148

Query: 136 LM--VGEGPS 143
           L+    E PS
Sbjct: 149 LVGATTENPS 158


>gi|149918222|ref|ZP_01906714.1| AAA ATPase [Plesiocystis pacifica SIR-1]
 gi|149820982|gb|EDM80389.1| AAA ATPase [Plesiocystis pacifica SIR-1]
          Length = 513

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 61/116 (52%), Gaps = 10/116 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR L+ + GQ       ++     ++  + +  ++F GPPG GKTTLA+++A   G +
Sbjct: 26  MRPRDLDGYVGQEHLTGPGRLLRRVVES--DRIPSMIFWGPPGTGKTTLARIIASRTGAH 83

Query: 82  FRSTSGPVIAKAGDL-AALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAME 130
           F + S    A   DL  A+    E RD      +LF+DEIHR +   ++ L P +E
Sbjct: 84  FDTLSA-TDAGVKDLRKAVERARERRDYQGRATLLFVDEIHRFNKAQQDALLPHVE 138


>gi|331000051|ref|ZP_08323746.1| recombination factor protein RarA [Parasutterella excrementihominis
           YIT 11859]
 gi|329572935|gb|EGG54555.1| recombination factor protein RarA [Parasutterella excrementihominis
           YIT 11859]
          Length = 484

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 72/144 (50%), Gaps = 12/144 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+T++E  GQ       K  + +A   A     +L+ GPPG+GKTTLA+++A   G+ 
Sbjct: 42  LRPKTIDEVVGQKHLLGPGKP-LRSAFENAHPHSMILW-GPPGVGKTTLARLMADAFGLP 99

Query: 82  FRSTSGPVIAKAGDL-AALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAMED--F 132
           F S S  V+    D+  A+     +R+      V+F+DE+HR S   ++   P +E   F
Sbjct: 100 FISISA-VLGGVKDIRDAVEKATANREKTGRSTVVFVDEVHRFSKSQQDAFLPHVESGLF 158

Query: 133 QLDLMVGEGPSARSVKINLSRFTL 156
                  E PS   +   LSR T+
Sbjct: 159 TFIGATTENPSFEVISALLSRSTV 182


>gi|289811623|ref|ZP_06542252.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 144

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 59/118 (50%), Gaps = 13/118 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP  L ++ GQ   + A   L   IEA       L  ++  GPPG GKTTLA+V+AR  
Sbjct: 20  MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
             +       TSG   I +A + A    N   R +LF+DE+HR +   ++   P +ED
Sbjct: 75  SADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED 132


>gi|15827173|ref|NP_301436.1| recombination factor protein RarA [Mycobacterium leprae TN]
 gi|221229651|ref|YP_002503067.1| recombination factor protein RarA [Mycobacterium leprae Br4923]
 gi|13092721|emb|CAC30018.1| conserved hypothetical protein [Mycobacterium leprae]
 gi|219932758|emb|CAR70603.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
          Length = 473

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 87/184 (47%), Gaps = 38/184 (20%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP +L+E  GQ   +   S L+  +E +   +  L      GPPG GKTTLA ++++  
Sbjct: 57  MRPASLDELVGQGHLLAPGSPLRRLVEGSGVVSAILH-----GPPGCGKTTLAALISQAT 111

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDF 132
           G  F + S  + A   D+ A+L           R VLFIDE+HR S   ++ L  A+E+ 
Sbjct: 112 GHRFEALSA-LSAGVKDVRAVLKIARSALLSGKRTVLFIDEVHRFSKTQQDALLSAVENR 170

Query: 133 QLDLMVG--EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
            + L+    E PS          F+++A          PL  R  I ++L     +D++ 
Sbjct: 171 VVLLVAATTENPS----------FSVVA----------PLLSRSLI-LQLRPLNADDIRA 209

Query: 191 IVQR 194
           +VQR
Sbjct: 210 VVQR 213


>gi|253990317|ref|YP_003041673.1| recombination factor protein RarA [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253781767|emb|CAQ84930.1| conserved hypothetical protein [Photorhabdus asymbiotica]
          Length = 447

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 9/129 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP TLE++ GQ    +  K    A   RA  L  ++  GPPG GKTTLA+++      +
Sbjct: 20  MRPITLEQYIGQQHLLAEGKPLPRAI--RAGQLHSMILWGPPGTGKTTLAEIIGHYAQAD 77

Query: 82  FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
                  TSG   I ++ + A    N   R +LF+DE+HR +   ++   P +ED  +  
Sbjct: 78  IERISAVTSGIKEIRESIEKARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 137

Query: 137 M--VGEGPS 143
           +    E PS
Sbjct: 138 IGATTENPS 146


>gi|134295004|ref|YP_001118739.1| recombination factor protein RarA [Burkholderia vietnamiensis G4]
 gi|134138161|gb|ABO53904.1| Recombination protein MgsA [Burkholderia vietnamiensis G4]
          Length = 436

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 67/259 (25%), Positives = 115/259 (44%), Gaps = 42/259 (16%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL E  GQ         L++  E+ K  +     ++  GPPG+GKTTLA++ A   
Sbjct: 17  LRPKTLAEVIGQTHLLGEGKPLRLAFESGKPHS-----MILWGPPGVGKTTLARLTALAF 71

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V+    D+   +   +D         +LF+DEIHR +   ++ L P +E 
Sbjct: 72  DCEFIALSA-VLGGVKDIREAMEQAKDTLNRTGRHTILFVDEIHRFNKGQQDALLPFVES 130

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
             L   +G      S ++N    + + +  +V +L + L D             ++++ +
Sbjct: 131 -GLVTFIGATTENPSFEVN----SALLSRAQVYVLKS-LDD-------------DEMRQL 171

Query: 192 VQRGAK--LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
           ++R  +  L GLA  D+A   +   + G  R    LL + +  A  A   TI  +   +A
Sbjct: 172 LERAQQIALDGLAFDDKAVDTLIGYADGDARRFLNLLEQAQTAASSARVTTIDADFVSSA 231

Query: 250 LLRLA--IDKMG---FDQL 263
           +   A   DK G   +DQ+
Sbjct: 232 MTLNARRFDKGGDNFYDQI 250


>gi|126322071|ref|XP_001368425.1| PREDICTED: similar to Werner helicase interacting protein 1 isoform
           1 [Monodelphis domestica]
          Length = 695

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 94/219 (42%), Gaps = 44/219 (20%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFV 60
           RE +  + V +  AD   +RP TL+E+ GQ +       L+  +E+ +     +  ++  
Sbjct: 240 REEIWQKLVGKPLADK--MRPATLQEYIGQNKVVGQETLLRSLLESNE-----IPSLILW 292

Query: 61  GPPGLGKTTLAQVVARELGVN---FRSTSGPVIAKAGDLAALLTNLED-------RDVLF 110
           GPPG GKTTLA ++A     N   F + S    AK  D+  ++   ++       + +LF
Sbjct: 293 GPPGCGKTTLAYIIANNSKKNSMRFVTLSA-TSAKTSDVRDVIKQAQNEKNFFKRKTILF 351

Query: 111 IDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           IDEIHR +   ++   P +E   + L+    E PS +     LSR  +I           
Sbjct: 352 IDEIHRFNKSQQDTFLPHVECGTVTLIGATTENPSFQVNAALLSRCRVIV---------- 401

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEA 207
                      L     E +KTI+ R     GL V D+ 
Sbjct: 402 -----------LEKLSAEAMKTILMRAVSSLGLRVLDQG 429


>gi|262370792|ref|ZP_06064116.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
 gi|262314154|gb|EEY95197.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
          Length = 425

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 63/204 (30%), Positives = 95/204 (46%), Gaps = 39/204 (19%)

Query: 16  DADISL---LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           D++I L   LRPR L E  GQ   +   + L+  I+        L  ++F GPPG+GKTT
Sbjct: 3   DSNIPLPERLRPRDLSEIIGQDHLLGEQAPLRQMIDQGH-----LPSIIFWGPPGVGKTT 57

Query: 70  LAQVVARELGVNFRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           +A ++A+ +   F S S           +IA  GDL           V+FIDEIHR +  
Sbjct: 58  IALLLAQAIDRPFVSLSALNTGVKELREIIADGGDLMP--------PVVFIDEIHRFNKS 109

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSR---FTLIAA---TTRVGLLTNPLQD 172
            ++ L  A+E  ++ L+    E PS       LSR   +TL A      +  LL     D
Sbjct: 110 QQDALLNAVEKGKITLIGATTENPSFEVNSALLSRCQVYTLNALDADAIQTLLLQAIKND 169

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGA 196
            F   ++  + +IE+ + +VQ  A
Sbjct: 170 PF---LKERYIQIEEFEALVQFAA 190


>gi|170756647|ref|YP_001782185.1| recombination factor protein RarA [Clostridium botulinum B1 str.
           Okra]
 gi|169121859|gb|ACA45695.1| ATPase, AAA family [Clostridium botulinum B1 str. Okra]
          Length = 416

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 111/257 (43%), Gaps = 26/257 (10%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           L+RP+ LE+F GQ    S  K      K ++  + + +F GPPG GKTTLA ++A  +  
Sbjct: 7   LMRPKKLEDFVGQKHILSENKPLYNLMKNKS--ICNSIFYGPPGTGKTTLANIMANYVDK 64

Query: 81  NFR--STSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
            F   + +   I    ++ + + +L +    VL+IDE+   +   ++ L   +ED ++ L
Sbjct: 65  KFYRLNATTASIKDIQEITSSINSLLNYSGVVLYIDELQHFTKKQQQALLEFIEDGRVIL 124

Query: 137 MVG--EGPSARSVKINLSRFTLIAAT--TRVGLL------TNPLQDRFGIPIRLNFYEIE 186
           +    E P     K  LSR  +       R  ++       N L D+ GI I+ +F  +E
Sbjct: 125 IASTTENPYFVIHKAILSRCNIFQFKPLNREDIILGLEKAINKLIDK-GINIKYSFESLE 183

Query: 187 DLKTIVQ----RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV-----AH 237
            +  I Q    +   +  LAV       I +       +A   +R      E      A 
Sbjct: 184 YIGEICQGDYRKAYNILELAVNSHCGFNIEITLDYIESLAQSNIRADATGDEYYNILSAF 243

Query: 238 AKTITREIADAALLRLA 254
            K+I    ADAA+  LA
Sbjct: 244 QKSIRGSDADAAVHYLA 260


>gi|262038640|ref|ZP_06012008.1| replication-associated recombination protein A [Leptotrichia
           goodfellowii F0264]
 gi|261747346|gb|EEY34817.1| replication-associated recombination protein A [Leptotrichia
           goodfellowii F0264]
          Length = 408

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 60/118 (50%), Gaps = 14/118 (11%)

Query: 23  RPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           RPRTLE+F GQ +       L+  IE          + +F G PG GKTTLA+++A  + 
Sbjct: 19  RPRTLEDFYGQEKIVGEKGVLRKIIEKG-----TFMNSIFWGSPGTGKTTLAEIIANRMN 73

Query: 80  VNFR-----STSGPVIAKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMED 131
            N+       +S   I +  + A  +  +E R  +LF DEIHR + + ++ L   +E+
Sbjct: 74  YNYEYLNAIKSSVSDIKELSERAKRIFGIEGRQTLLFFDEIHRFNKLQQDSLLQDLEN 131


>gi|261209220|ref|ZP_05923612.1| AAA ATPase [Enterococcus faecium TC 6]
 gi|289566136|ref|ZP_06446571.1| AAA domain-containing protein yrvN [Enterococcus faecium D344SRF]
 gi|294614190|ref|ZP_06694110.1| ATPase, AAA family [Enterococcus faecium E1636]
 gi|260076766|gb|EEW64501.1| AAA ATPase [Enterococcus faecium TC 6]
 gi|289162081|gb|EFD09946.1| AAA domain-containing protein yrvN [Enterococcus faecium D344SRF]
 gi|291592966|gb|EFF24555.1| ATPase, AAA family [Enterococcus faecium E1636]
          Length = 428

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 4/130 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRT++E  GQ       K+      AR   L  ++  GPPG GKT++A  +A      
Sbjct: 9   MRPRTIDEVVGQQHLVGEGKIIRRMVDARM--LSSMILYGPPGTGKTSIASAIAGSTNYA 66

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR  +    +K    + A    +    +L +DE+HRL    ++ L P +E  ++ +++G 
Sbjct: 67  FRMLNAATDSKKDLQVVAEEAKMSGTVILLLDEVHRLDKTKQDFLLPHLESGRI-ILIGA 125

Query: 141 GPSARSVKIN 150
                 + IN
Sbjct: 126 TTENPYITIN 135


>gi|241889956|ref|ZP_04777254.1| replication-associated recombination protein A [Gemella haemolysans
           ATCC 10379]
 gi|241863578|gb|EER67962.1| replication-associated recombination protein A [Gemella haemolysans
           ATCC 10379]
          Length = 415

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 63/114 (55%), Gaps = 5/114 (4%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           I+ LRP  +++  GQ     + KV  +  +++ +    +L+ GPPG GKT++A  +A EL
Sbjct: 5   INKLRPSKIDDIIGQHHLIGDGKVLTKIVESK-KMFSFILY-GPPGTGKTSIANALANEL 62

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAME 130
              F+  +  V     DL A++   +   + +L +DE HRL+  +++IL P +E
Sbjct: 63  DYKFKILNA-VNCTKKDLTAVIEESKRFKKVILLLDEFHRLTKPMQDILLPEIE 115


>gi|314938563|ref|ZP_07845847.1| recombination factor protein RarA [Enterococcus faecium TX0133a04]
 gi|314940908|ref|ZP_07847814.1| recombination factor protein RarA [Enterococcus faecium TX0133C]
 gi|314948071|ref|ZP_07851473.1| recombination factor protein RarA [Enterococcus faecium TX0082]
 gi|314952045|ref|ZP_07855068.1| recombination factor protein RarA [Enterococcus faecium TX0133A]
 gi|314991926|ref|ZP_07857381.1| recombination factor protein RarA [Enterococcus faecium TX0133B]
 gi|314995184|ref|ZP_07860298.1| recombination factor protein RarA [Enterococcus faecium TX0133a01]
 gi|313590593|gb|EFR69438.1| recombination factor protein RarA [Enterococcus faecium TX0133a01]
 gi|313593510|gb|EFR72355.1| recombination factor protein RarA [Enterococcus faecium TX0133B]
 gi|313595835|gb|EFR74680.1| recombination factor protein RarA [Enterococcus faecium TX0133A]
 gi|313600266|gb|EFR79109.1| recombination factor protein RarA [Enterococcus faecium TX0133C]
 gi|313642120|gb|EFS06700.1| recombination factor protein RarA [Enterococcus faecium TX0133a04]
 gi|313645487|gb|EFS10067.1| recombination factor protein RarA [Enterococcus faecium TX0082]
          Length = 459

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 4/130 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRT++E  GQ       K+      AR   L  ++  GPPG GKT++A  +A      
Sbjct: 40  MRPRTIDEVVGQQHLVGEGKIIRRMVDARM--LSSMILYGPPGTGKTSIASAIAGSTNYA 97

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR  +    +K    + A    +    +L +DE+HRL    ++ L P +E  ++ +++G 
Sbjct: 98  FRMLNAATDSKKDLQVVAEEAKMSGTVILLLDEVHRLDKTKQDFLLPHLESGRI-ILIGA 156

Query: 141 GPSARSVKIN 150
                 + IN
Sbjct: 157 TTENPYITIN 166


>gi|301632691|ref|XP_002945415.1| PREDICTED: replication-associated recombination protein A-like
           [Xenopus (Silurana) tropicalis]
          Length = 435

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 82/327 (25%), Positives = 132/327 (40%), Gaps = 60/327 (18%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPRTL E  GQ         L++  E+ +  +      +  GPPG+GKTT+A+++A   
Sbjct: 16  LRPRTLGEVIGQQHVLGPGMPLRLAFESGRPHS-----CILWGPPGVGKTTIARLMAEAF 70

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE--------DRDVLFIDEIHRLSIIVEEILYPAME 130
              F S S  V+    D+   +   E         R ++F+DE+HR +   ++   P +E
Sbjct: 71  DAQFISISA-VLGGVKDIRDAVQLAERARDGLAPQRTIVFVDEVHRFNKSQQDAFLPHVE 129

Query: 131 D--FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
              F       E PS       LSR T+         +  PL               +DL
Sbjct: 130 SGLFTFVGATTENPSFEVNSALLSRATVY--------VLQPL-------------AADDL 168

Query: 189 KTIVQRGAKLTGL-AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           K IV +   L  L A+ +EA   +   + G  R   RLL  +   +  A    +   + D
Sbjct: 169 KQIVAKAQALQALPAIENEALERLVAYADGDAR---RLLNTLETLSVTAGQAQLA-TLTD 224

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           A LL++  ++M              R   GG    +TISA     R +  D    ++++ 
Sbjct: 225 AWLLQVLGERM-------------RRYDKGGEQFYDTISALHKSVRGSDPDAALYWLVRM 271

Query: 308 GFIQRTPR--GRLLMPIAWQHLGIDIP 332
                 PR   R ++ +AW+ +G+  P
Sbjct: 272 LDGGADPRYMARRIVRMAWEDVGLADP 298


>gi|322806907|emb|CBZ04477.1| ATPase, AAA family [Clostridium botulinum H04402 065]
          Length = 416

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 111/257 (43%), Gaps = 26/257 (10%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           L+RP+ LE+F GQ    S  K      K ++  + + +F GPPG GKTTLA ++A  +  
Sbjct: 7   LMRPKKLEDFVGQKHILSENKPLYNLMKNKS--ICNSIFYGPPGTGKTTLANIMANYVDK 64

Query: 81  NFR--STSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
            F   + +   I    ++ + + +L +    VL+IDE+   +   ++ L   +ED ++ L
Sbjct: 65  KFYRLNATTASIKDIQEITSSINSLLNYSGVVLYIDELQHFTKKQQQALLEFIEDGRVIL 124

Query: 137 MVG--EGPSARSVKINLSRFTLIAAT--TRVGLL------TNPLQDRFGIPIRLNFYEIE 186
           +    E P     K  LSR  +       R  ++       N L D+ GI I+ +F  +E
Sbjct: 125 IASTTENPYFVIHKAILSRCNIFQFKPLNREDIILGLEKAINKLIDK-GINIKYSFESLE 183

Query: 187 DLKTIVQ----RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV-----AH 237
            +  I Q    +   +  LAV       I +       +A   +R      E      A 
Sbjct: 184 YIGEICQGDYRKAYNILELAVNSHCGINIEITLDYIESLAQSNIRADATGDEYYNILSAF 243

Query: 238 AKTITREIADAALLRLA 254
            K+I    ADAA+  LA
Sbjct: 244 QKSIRGSDADAAVHYLA 260


>gi|254420530|ref|ZP_05034254.1| ATPase, AAA family protein [Brevundimonas sp. BAL3]
 gi|196186707|gb|EDX81683.1| ATPase, AAA family protein [Brevundimonas sp. BAL3]
          Length = 442

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 61/117 (52%), Gaps = 13/117 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPRTL+E  GQ   +     ++  IEA +     L  ++  GPPG GKTT+A+++A+  
Sbjct: 21  LRPRTLDEVVGQDHLLGPGGPIRRMIEAGR-----LGSMILWGPPGTGKTTIARLLAQAA 75

Query: 79  GVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           G  ++S S        + KA + A +        +LF+DEIHR +   ++   P +E
Sbjct: 76  GYEYQSISAVFSGVADLKKAFEAARMRRAAGQSTLLFVDEIHRFNRAQQDGFLPFVE 132


>gi|296447422|ref|ZP_06889347.1| AAA ATPase central domain protein [Methylosinus trichosporium OB3b]
 gi|296255042|gb|EFH02144.1| AAA ATPase central domain protein [Methylosinus trichosporium OB3b]
          Length = 436

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 63/133 (47%), Gaps = 17/133 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPR L+E  GQ   V     L   I     R+ ++  ++F GPPG GKTT+A+++A E 
Sbjct: 21  LRPRRLDEVAGQERLVGPDGALTRMI-----RSGSIGSLIFWGPPGTGKTTVARLLAHET 75

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDF 132
            + F   S  +     DL         R       +LF+DEIHR +   ++   P MED 
Sbjct: 76  DLAFVQISA-IFTGVADLKKTFEAARARRAVGQGTLLFVDEIHRFNRAQQDSFLPVMEDG 134

Query: 133 QLDLM--VGEGPS 143
            + L+    E PS
Sbjct: 135 AVTLIGATTENPS 147


>gi|294011479|ref|YP_003544939.1| putative ATPase [Sphingobium japonicum UT26S]
 gi|292674809|dbj|BAI96327.1| putative ATPase [Sphingobium japonicum UT26S]
          Length = 436

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 64/133 (48%), Gaps = 17/133 (12%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKAR---AEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPR L E  GQ           E A  R   A  L  ++  GPPG GKTT+++++A  +
Sbjct: 23  LRPRALAEVVGQDHLTGP-----EGAIGRMVAAGRLSSIILWGPPGTGKTTISRLLADAV 77

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDF 132
           G+ F   S  V +   DL  +    +D      + +LF+DEIHR +   ++   P +ED 
Sbjct: 78  GMRFEPISA-VFSGVADLKKVFAAAKDHARRGEKTLLFVDEIHRFNRAQQDGFLPFVEDG 136

Query: 133 QLDLM--VGEGPS 143
            + L+    E PS
Sbjct: 137 TVTLVGATTENPS 149


>gi|257899569|ref|ZP_05679222.1| AAA ATPase [Enterococcus faecium Com15]
 gi|257837481|gb|EEV62555.1| AAA ATPase [Enterococcus faecium Com15]
          Length = 428

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 4/130 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRT++E  GQ       K+      AR   L  ++  GPPG GKT++A  +A      
Sbjct: 9   MRPRTIDEVVGQQHLVGEGKIIRRMVDARM--LSSMILYGPPGTGKTSIASAIAGSTNYA 66

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR  +    +K    + A    +    +L +DE+HRL    ++ L P +E  ++ +++G 
Sbjct: 67  FRMLNAATDSKKDLQVVAEEAKMSGTVILLLDEVHRLDKTKQDFLLPHLESGRI-ILIGA 125

Query: 141 GPSARSVKIN 150
                 + IN
Sbjct: 126 TTENPYITIN 135


>gi|269977315|ref|ZP_06184288.1| recombination factor protein RarA [Mobiluncus mulieris 28-1]
 gi|269934618|gb|EEZ91179.1| recombination factor protein RarA [Mobiluncus mulieris 28-1]
          Length = 445

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 60/116 (51%), Gaps = 6/116 (5%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG-- 79
           +RPR+L+E  GQ    +           + +    V+  GPPG GKTTLA +VA+  G  
Sbjct: 27  MRPRSLDELVGQEHLLAQNSPLRRLLSGQTDMASSVILFGPPGTGKTTLAFLVAQAGGRE 86

Query: 80  -VNFRSTSGPV--IAKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMED 131
            V   + S  V  + +  D A    NLE ++ +LF+DE+HR S   ++ L  A+E+
Sbjct: 87  YVQLSAISAGVKEVREVIDSAKRRLNLEGKETILFLDEVHRFSKSQQDSLLSAVEN 142


>gi|229062094|ref|ZP_04199419.1| hypothetical protein bcere0026_41660 [Bacillus cereus AH603]
 gi|228717246|gb|EEL68921.1| hypothetical protein bcere0026_41660 [Bacillus cereus AH603]
          Length = 428

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 86/330 (26%), Positives = 130/330 (39%), Gaps = 65/330 (19%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  ++E  GQ       K+     +A       ++  GPPG GKT++A  +A   G  
Sbjct: 9   MRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAIAGSTGTL 66

Query: 82  FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
           FR  +  V     D+  ++    +    VL +DE+HRL    ++ L P +E   L     
Sbjct: 67  FRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLL----- 120

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEI----ED-----LK 189
                          TLI ATT     +NP       I  R   +E+    ED     LK
Sbjct: 121 ---------------TLIGATT-----SNPFHAINSAIRSRCQIFELHALTEDDILIGLK 160

Query: 190 TIVQRGAKLTG---LAVTDEAACEIAMRSRGTPRIAGRLLRR--VRDFAEVAHAKTITRE 244
             ++   K  G   + VTDEA    A  S G  R A   L    +  F     A  IT E
Sbjct: 161 RALEDKEKGLGEYDVTVTDEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLE 220

Query: 245 IADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           IA+  L + +   DK G    D+  L+   ++  G  V              A+  L   
Sbjct: 221 IAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDVNA------------ALHYLAR- 265

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
            +I+ G +Q    GR L+ +A++ +G+  P
Sbjct: 266 -LIEAGDLQSI--GRRLLIMAYEDIGLASP 292


>gi|69247927|ref|ZP_00604543.1| AAA ATPase, central region [Enterococcus faecium DO]
 gi|257880292|ref|ZP_05659945.1| AAA ATPase [Enterococcus faecium 1,230,933]
 gi|257882146|ref|ZP_05661799.1| AAA ATPase [Enterococcus faecium 1,231,502]
 gi|257885338|ref|ZP_05664991.1| AAA ATPase [Enterococcus faecium 1,231,501]
 gi|257894205|ref|ZP_05673858.1| AAA ATPase [Enterococcus faecium 1,231,408]
 gi|258614762|ref|ZP_05712532.1| recombination factor protein RarA [Enterococcus faecium DO]
 gi|260562406|ref|ZP_05832920.1| AAA ATPase [Enterococcus faecium C68]
 gi|293556301|ref|ZP_06674886.1| ATPase, AAA family [Enterococcus faecium E1039]
 gi|293560717|ref|ZP_06677196.1| ATPase, AAA family [Enterococcus faecium E1162]
 gi|293566152|ref|ZP_06678555.1| ATPase, AAA family [Enterococcus faecium E1071]
 gi|294618776|ref|ZP_06698303.1| ATPase, AAA family [Enterococcus faecium E1679]
 gi|294622228|ref|ZP_06701288.1| ATPase, AAA family [Enterococcus faecium U0317]
 gi|68194629|gb|EAN09116.1| AAA ATPase, central region [Enterococcus faecium DO]
 gi|257814520|gb|EEV43278.1| AAA ATPase [Enterococcus faecium 1,230,933]
 gi|257817804|gb|EEV45132.1| AAA ATPase [Enterococcus faecium 1,231,502]
 gi|257821194|gb|EEV48324.1| AAA ATPase [Enterococcus faecium 1,231,501]
 gi|257830584|gb|EEV57191.1| AAA ATPase [Enterococcus faecium 1,231,408]
 gi|260073330|gb|EEW61671.1| AAA ATPase [Enterococcus faecium C68]
 gi|291590078|gb|EFF21870.1| ATPase, AAA family [Enterococcus faecium E1071]
 gi|291594964|gb|EFF26314.1| ATPase, AAA family [Enterococcus faecium E1679]
 gi|291598270|gb|EFF29363.1| ATPase, AAA family [Enterococcus faecium U0317]
 gi|291601560|gb|EFF31827.1| ATPase, AAA family [Enterococcus faecium E1039]
 gi|291605308|gb|EFF34763.1| ATPase, AAA family [Enterococcus faecium E1162]
          Length = 428

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 4/130 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRT++E  GQ       K+      AR   L  ++  GPPG GKT++A  +A      
Sbjct: 9   MRPRTIDEVVGQQHLVGEGKIIRRMVDARM--LSSMILYGPPGTGKTSIASAIAGSTNYA 66

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR  +    +K    + A    +    +L +DE+HRL    ++ L P +E  ++ +++G 
Sbjct: 67  FRMLNAATDSKKDLQVVAEEAKMSGTVILLLDEVHRLDKTKQDFLLPHLESGRI-ILIGA 125

Query: 141 GPSARSVKIN 150
                 + IN
Sbjct: 126 TTENPYITIN 135


>gi|293571361|ref|ZP_06682392.1| ATPase, AAA family [Enterococcus faecium E980]
 gi|291608577|gb|EFF37868.1| ATPase, AAA family [Enterococcus faecium E980]
          Length = 427

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 4/130 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRT++E  GQ       K+      AR   L  ++  GPPG GKT++A  +A      
Sbjct: 9   MRPRTIDEVVGQQHLVGEGKIIRRMVDARM--LSSMILYGPPGTGKTSIASAIAGSTNYA 66

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR  +    +K    + A    +    +L +DE+HRL    ++ L P +E  ++ +++G 
Sbjct: 67  FRMLNAATDSKKDLQVVAEEAKMSGTVILLLDEVHRLDKTKQDFLLPHLESGRI-ILIGA 125

Query: 141 GPSARSVKIN 150
                 + IN
Sbjct: 126 TTENPYITIN 135


>gi|325120694|emb|CBZ56249.1| putative ATPase, AAA family domain containing protein [Neospora
           caninum Liverpool]
          Length = 1056

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 87/206 (42%), Gaps = 46/206 (22%)

Query: 22  LRPRTLEEFTGQVEACS----NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           LRP +L+EF GQ E+      +++  +EA       +  ++  GPPG GKTTLA +  R 
Sbjct: 584 LRPTSLDEFVGQTESIQGGRGSVRELMEAGH-----IPSLILWGPPGCGKTTLALLAGRC 638

Query: 78  LGVNFRSTSGPVIAKAGDLAA--------------LLTNLEDRDVLFIDEIHRLSIIVEE 123
                  +  PV  K   +                L    + + +LF+DEIHR +   ++
Sbjct: 639 TNRKSPLSLPPVFKKMSAVTCGVNDVRKVVQEALTLRATTKQKTILFLDEIHRFNKAQQD 698

Query: 124 ILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
            L P +E   + L+    E PS    +  LSR        RV  L  PL +         
Sbjct: 699 ALLPHVESGTVTLIGATTENPSFEVNRALLSR-------CRVCKL-EPLTE--------- 741

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEA 207
               ++L  I+QR AK   + VT+ A
Sbjct: 742 ----DNLTVILQRAAKEENVTVTEAA 763


>gi|167570877|ref|ZP_02363751.1| recombination factor protein RarA [Burkholderia oklahomensis C6786]
          Length = 436

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 121/287 (42%), Gaps = 38/287 (13%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL +  GQ         L++  E+ K  +     ++  GPPG+GKTTLA++ A   
Sbjct: 17  LRPKTLADVIGQTHLLGEGKPLRLAFESGKPHS-----MILWGPPGVGKTTLARLTALAF 71

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V+    D+   +    D         +LF+DEIHR +   ++ L P +E 
Sbjct: 72  DCEFIALSA-VLGGVKDIREAMDQARDTLNRTGRHTILFVDEIHRFNKAQQDALLPFVES 130

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
             L   +G      S ++N    + + +  +V +L +  +D           E+  L   
Sbjct: 131 -GLVTFIGATTENPSFEVN----SALLSRAQVYVLKSLTED-----------ELRQLLAR 174

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
            Q  A L GLA  D+A   +   + G  R    LL + +  A  A   TI     ++A+ 
Sbjct: 175 AQDTA-LAGLAFEDKAVDTLVGYADGDARRFLNLLEQAQTAATSAGVTTIDAAFVESAMT 233

Query: 252 RLA--IDKMG---FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
             A   DK G   +DQ+   + ++   N  G       +  G ++P+
Sbjct: 234 MNARRFDKGGDNFYDQISALHKSVRGSNPDGALYWFCRMLDGGADPK 280


>gi|291515550|emb|CBK64760.1| Recombination protein MgsA [Alistipes shahii WAL 8301]
          Length = 425

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 70/144 (48%), Gaps = 18/144 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPRT++E+ GQ   V      + F E        +   +  GPPG+GKTTLA++VA +L
Sbjct: 10  LRPRTIDEYIGQEHLVGKNGVFRKFFETGN-----VPSFILWGPPGVGKTTLAKIVATQL 64

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V +   D+  ++ +   +        +LFIDEIHR +   ++ L  A+E 
Sbjct: 65  ERPFFTLSA-VTSGVKDVREVIESARKQRFFDQKAPLLFIDEIHRFNKSQQDSLLGAVEQ 123

Query: 132 --FQLDLMVGEGPSARSVKINLSR 153
             F L     E PS   +   LSR
Sbjct: 124 GVFTLIGATTENPSFEVISPLLSR 147


>gi|257890950|ref|ZP_05670603.1| recombination factor protein RarA [Enterococcus faecium 1,231,410]
 gi|257827310|gb|EEV53936.1| recombination factor protein RarA [Enterococcus faecium 1,231,410]
          Length = 342

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 4/130 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRT++E  GQ       K+      AR   L  ++  GPPG GKT++A  +A      
Sbjct: 9   MRPRTIDEVVGQQHLVGEGKIIRRMVDARM--LSSMILYGPPGTGKTSIASAIAGSTNYA 66

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR  +    +K    + A    +    +L +DE+HRL    ++ L P +E  ++ +++G 
Sbjct: 67  FRMLNAATDSKKDLQVVAEEAKMSGTVILLLDEVHRLDKTKQDFLLPHLESGRI-ILIGA 125

Query: 141 GPSARSVKIN 150
                 + IN
Sbjct: 126 TTENPYITIN 135


>gi|160936225|ref|ZP_02083598.1| hypothetical protein CLOBOL_01121 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441035|gb|EDP18759.1| hypothetical protein CLOBOL_01121 [Clostridium bolteae ATCC
           BAA-613]
          Length = 438

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 76/156 (48%), Gaps = 22/156 (14%)

Query: 20  SLLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           S LRP  L+ F GQ         L+  IE  K     +  ++F GPPG+GKTTLA ++A+
Sbjct: 18  SRLRPDDLDGFVGQEHLLGKGKLLRQLIEQDK-----IPSMIFWGPPGVGKTTLAGIIAK 72

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130
                F + S  V +   ++  ++   E+      + +LF+DEIHR +   ++   P +E
Sbjct: 73  RTNAQFINFSA-VTSGIKEIKEVMVQAENSRRMGIKTLLFVDEIHRFNKAQQDAFLPYVE 131

Query: 131 DFQLDLMVGEGPSARSVKIN---LSR---FTLIAAT 160
              + +++G      S +IN   LSR   F L A T
Sbjct: 132 KGSI-ILIGATTENPSFEINSALLSRCRVFVLQALT 166


>gi|227875433|ref|ZP_03993574.1| crossover junction endodeoxyribonuclease ATPase [Mobiluncus
           mulieris ATCC 35243]
 gi|306818744|ref|ZP_07452466.1| AAA family ATPase [Mobiluncus mulieris ATCC 35239]
 gi|307701030|ref|ZP_07638055.1| recombination factor protein RarA [Mobiluncus mulieris FB024-16]
 gi|227843987|gb|EEJ54155.1| crossover junction endodeoxyribonuclease ATPase [Mobiluncus
           mulieris ATCC 35243]
 gi|304648430|gb|EFM45733.1| AAA family ATPase [Mobiluncus mulieris ATCC 35239]
 gi|307614025|gb|EFN93269.1| recombination factor protein RarA [Mobiluncus mulieris FB024-16]
          Length = 445

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 60/116 (51%), Gaps = 6/116 (5%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG-- 79
           +RPR+L+E  GQ    +           + +    V+  GPPG GKTTLA +VA+  G  
Sbjct: 27  MRPRSLDELVGQEHLLAQNSPLRRLLSGQTDMASSVILFGPPGTGKTTLAFLVAQAGGRE 86

Query: 80  -VNFRSTSGPV--IAKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMED 131
            V   + S  V  + +  D A    NLE ++ +LF+DE+HR S   ++ L  A+E+
Sbjct: 87  YVQLSAISAGVKEVREVIDSAKRRLNLEGKETILFLDEVHRFSKSQQDSLLSAVEN 142


>gi|312862465|ref|ZP_07722708.1| ATPase, AAA family [Streptococcus vestibularis F0396]
 gi|322515850|ref|ZP_08068794.1| crossover junction endodeoxyribonuclease [Streptococcus
           vestibularis ATCC 49124]
 gi|311102108|gb|EFQ60308.1| ATPase, AAA family [Streptococcus vestibularis F0396]
 gi|322125736|gb|EFX97058.1| crossover junction endodeoxyribonuclease [Streptococcus
           vestibularis ATCC 49124]
          Length = 422

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 61/123 (49%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRT+ E  GQ       K+     +A    L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPRTISEVIGQKHLVGEGKIICRMVEANM--LSSMILYGPPGIGKTSIASAIAGTTKFA 66

Query: 82  FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +  V +K       + A    +L    VL +DEIHRL    ++ L P +E+  + +
Sbjct: 67  FRTFNATVDSKKRLQEIAEEAKFSGSL----VLLLDEIHRLDKAKQDFLLPLLENGNI-I 121

Query: 137 MVG 139
           M+G
Sbjct: 122 MIG 124


>gi|227519321|ref|ZP_03949370.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis
           TX0104]
 gi|227555471|ref|ZP_03985518.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis
           HH22]
 gi|229545438|ref|ZP_04434163.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis
           TX1322]
 gi|255975483|ref|ZP_05426069.1| AAA ATPase [Enterococcus faecalis T2]
 gi|256762908|ref|ZP_05503488.1| recombination factor protein RarA [Enterococcus faecalis T3]
 gi|256853493|ref|ZP_05558863.1| recombination factor protein RarA [Enterococcus faecalis T8]
 gi|256961533|ref|ZP_05565704.1| AAA ATPase [Enterococcus faecalis Merz96]
 gi|257087183|ref|ZP_05581544.1| AAA ATPase [Enterococcus faecalis D6]
 gi|257090260|ref|ZP_05584621.1| recombination factor protein rarA [Enterococcus faecalis CH188]
 gi|257419659|ref|ZP_05596653.1| recombination factor protein rarA [Enterococcus faecalis T11]
 gi|293384708|ref|ZP_06630563.1| ATPase, AAA family [Enterococcus faecalis R712]
 gi|293387408|ref|ZP_06631963.1| ATPase, AAA family [Enterococcus faecalis S613]
 gi|294779740|ref|ZP_06745127.1| recombination factor protein RarA [Enterococcus faecalis PC1.1]
 gi|307268134|ref|ZP_07549521.1| recombination factor protein RarA [Enterococcus faecalis TX4248]
 gi|307277701|ref|ZP_07558787.1| recombination factor protein RarA [Enterococcus faecalis TX0860]
 gi|307287876|ref|ZP_07567909.1| recombination factor protein RarA [Enterococcus faecalis TX0109]
 gi|307295905|ref|ZP_07575737.1| recombination factor protein RarA [Enterococcus faecalis TX0411]
 gi|312900874|ref|ZP_07760168.1| recombination factor protein RarA [Enterococcus faecalis TX0470]
 gi|312902758|ref|ZP_07761962.1| recombination factor protein RarA [Enterococcus faecalis TX0635]
 gi|312908306|ref|ZP_07767270.1| recombination factor protein RarA [Enterococcus faecalis DAPTO 512]
 gi|312910620|ref|ZP_07769462.1| recombination factor protein RarA [Enterococcus faecalis DAPTO 516]
 gi|227073250|gb|EEI11213.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis
           TX0104]
 gi|227175393|gb|EEI56365.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis
           HH22]
 gi|229309354|gb|EEN75341.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis
           TX1322]
 gi|255968355|gb|EET98977.1| AAA ATPase [Enterococcus faecalis T2]
 gi|256684159|gb|EEU23854.1| recombination factor protein RarA [Enterococcus faecalis T3]
 gi|256711952|gb|EEU26990.1| recombination factor protein RarA [Enterococcus faecalis T8]
 gi|256952029|gb|EEU68661.1| AAA ATPase [Enterococcus faecalis Merz96]
 gi|256995213|gb|EEU82515.1| AAA ATPase [Enterococcus faecalis D6]
 gi|256999072|gb|EEU85592.1| recombination factor protein rarA [Enterococcus faecalis CH188]
 gi|257161487|gb|EEU91447.1| recombination factor protein rarA [Enterococcus faecalis T11]
 gi|291078015|gb|EFE15379.1| ATPase, AAA family [Enterococcus faecalis R712]
 gi|291083199|gb|EFE20162.1| ATPase, AAA family [Enterococcus faecalis S613]
 gi|294453114|gb|EFG21529.1| recombination factor protein RarA [Enterococcus faecalis PC1.1]
 gi|306496236|gb|EFM65815.1| recombination factor protein RarA [Enterococcus faecalis TX0411]
 gi|306501021|gb|EFM70328.1| recombination factor protein RarA [Enterococcus faecalis TX0109]
 gi|306505580|gb|EFM74764.1| recombination factor protein RarA [Enterococcus faecalis TX0860]
 gi|306515524|gb|EFM84052.1| recombination factor protein RarA [Enterococcus faecalis TX4248]
 gi|310625720|gb|EFQ09003.1| recombination factor protein RarA [Enterococcus faecalis DAPTO 512]
 gi|310633812|gb|EFQ17095.1| recombination factor protein RarA [Enterococcus faecalis TX0635]
 gi|311289168|gb|EFQ67724.1| recombination factor protein RarA [Enterococcus faecalis DAPTO 516]
 gi|311291973|gb|EFQ70529.1| recombination factor protein RarA [Enterococcus faecalis TX0470]
 gi|315025984|gb|EFT37916.1| recombination factor protein RarA [Enterococcus faecalis TX2137]
 gi|315028905|gb|EFT40837.1| recombination factor protein RarA [Enterococcus faecalis TX4000]
 gi|315033296|gb|EFT45228.1| recombination factor protein RarA [Enterococcus faecalis TX0017]
 gi|315143409|gb|EFT87425.1| recombination factor protein RarA [Enterococcus faecalis TX2141]
 gi|315147642|gb|EFT91658.1| recombination factor protein RarA [Enterococcus faecalis TX4244]
 gi|315149228|gb|EFT93244.1| recombination factor protein RarA [Enterococcus faecalis TX0012]
 gi|315163672|gb|EFU07689.1| recombination factor protein RarA [Enterococcus faecalis TX1302]
 gi|315167496|gb|EFU11513.1| recombination factor protein RarA [Enterococcus faecalis TX1341]
 gi|315169388|gb|EFU13405.1| recombination factor protein RarA [Enterococcus faecalis TX1342]
 gi|315574550|gb|EFU86741.1| recombination factor protein RarA [Enterococcus faecalis TX0309B]
 gi|315576689|gb|EFU88880.1| recombination factor protein RarA [Enterococcus faecalis TX0630]
 gi|315581808|gb|EFU93999.1| recombination factor protein RarA [Enterococcus faecalis TX0309A]
 gi|327535494|gb|AEA94328.1| replication-associated recombination protein A [Enterococcus
           faecalis OG1RF]
 gi|329568738|gb|EGG50538.1| ATPase, AAA family [Enterococcus faecalis TX1467]
          Length = 425

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 4/130 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR L+E  GQ       K+     +A+   L  ++  GPPG GKT++A  +A      
Sbjct: 9   MRPRHLDEVVGQQHLVGPGKIIRRMVEAKM--LSSMILYGPPGTGKTSIASAIAGSTNYA 66

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR  +     K    + A    +    +L +DEIHRL    ++ L P +E+ ++ +M+G 
Sbjct: 67  FRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPHLENGRI-IMIGA 125

Query: 141 GPSARSVKIN 150
                 + IN
Sbjct: 126 TTENPYITIN 135


>gi|315174320|gb|EFU18337.1| recombination factor protein RarA [Enterococcus faecalis TX1346]
          Length = 425

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 4/130 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR L+E  GQ       K+     +A+   L  ++  GPPG GKT++A  +A      
Sbjct: 9   MRPRHLDEVVGQQHLVGPGKIIRRMVEAKM--LSSMILYGPPGTGKTSIASAIAGSTNYA 66

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR  +     K    + A    +    +L +DEIHRL    ++ L P +E+ ++ +M+G 
Sbjct: 67  FRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPHLENGRI-IMIGA 125

Query: 141 GPSARSVKIN 150
                 + IN
Sbjct: 126 TTENPYITIN 135


>gi|256619453|ref|ZP_05476299.1| recombination factor protein RarA [Enterococcus faecalis ATCC 4200]
 gi|256598980|gb|EEU18156.1| recombination factor protein RarA [Enterococcus faecalis ATCC 4200]
          Length = 425

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 4/130 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR L+E  GQ       K+     +A+   L  ++  GPPG GKT++A  +A      
Sbjct: 9   MRPRHLDEVVGQQHLVGPGKIIRRMVEAKM--LSSMILYGPPGTGKTSIASAIAGSTNYA 66

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR  +     K    + A    +    +L +DEIHRL    ++ L P +E+ ++ +M+G 
Sbjct: 67  FRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPHLENGRI-IMIGA 125

Query: 141 GPSARSVKIN 150
                 + IN
Sbjct: 126 TTENPYITIN 135


>gi|167974477|ref|ZP_02556754.1| ATPase, AAA family [Ureaplasma urealyticum serovar 11 str. ATCC
           33695]
 gi|188997939|gb|EDU67036.1| ATPase, AAA family [Ureaplasma urealyticum serovar 11 str. ATCC
           33695]
          Length = 408

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 67/120 (55%), Gaps = 5/120 (4%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +L  P ++++  GQ +    + +  +        + +++F GPPG+GK++LA+V+A++L 
Sbjct: 8   TLKNPHSIDDIVGQKDLLDEIGIIRKMV--NHHQVFNLIFYGPPGVGKSSLAKVLAQDLK 65

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           V F +   PV+     L  ++    D +  ++ IDEIHRL+   ++IL P +E  ++ L 
Sbjct: 66  VPF-AFFNPVVNSKKQLMQIIEQALDLNNFIIIIDEIHRLNKDKQDILLPIIEANKIKLF 124


>gi|167975025|ref|ZP_02557302.1| ATPase, AAA family [Ureaplasma urealyticum serovar 12 str. ATCC
           33696]
 gi|198273283|ref|ZP_03205819.1| ATPase, AAA family [Ureaplasma urealyticum serovar 4 str. ATCC
           27816]
 gi|195659922|gb|EDX53302.1| ATPase, AAA family [Ureaplasma urealyticum serovar 12 str. ATCC
           33696]
 gi|198249803|gb|EDY74583.1| ATPase, AAA family [Ureaplasma urealyticum serovar 4 str. ATCC
           27816]
          Length = 408

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 67/120 (55%), Gaps = 5/120 (4%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +L  P ++++  GQ +    + +  +        + +++F GPPG+GK++LA+V+A++L 
Sbjct: 8   TLKNPHSIDDIVGQKDLLDEIGIIRKMV--NHHQVFNLIFYGPPGVGKSSLAKVLAQDLK 65

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           V F +   PV+     L  ++    D +  ++ IDEIHRL+   ++IL P +E  ++ L 
Sbjct: 66  VPF-AFFNPVVNSKKQLMQIIEQALDLNNFIIIIDEIHRLNKDKQDILLPIIEANKIKLF 124


>gi|163942149|ref|YP_001647033.1| recombination factor protein RarA [Bacillus weihenstephanensis
           KBAB4]
 gi|163864346|gb|ABY45405.1| AAA ATPase central domain protein [Bacillus weihenstephanensis
           KBAB4]
          Length = 428

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 86/330 (26%), Positives = 130/330 (39%), Gaps = 65/330 (19%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  ++E  GQ       K+     +A       ++  GPPG GKT++A  +A   G  
Sbjct: 9   MRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAIAGSTGTL 66

Query: 82  FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
           FR  +  V     D+  ++    +    VL +DE+HRL    ++ L P +E   L     
Sbjct: 67  FRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLL----- 120

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEI----ED-----LK 189
                          TLI ATT     +NP       I  R   +E+    ED     LK
Sbjct: 121 ---------------TLIGATT-----SNPFHAINSAIRSRCQIFELHALTEDDILIGLK 160

Query: 190 TIVQRGAKLTG---LAVTDEAACEIAMRSRGTPRIAGRLLRR--VRDFAEVAHAKTITRE 244
             ++   K  G   + VTDEA    A  S G  R A   L    +  F     A  IT E
Sbjct: 161 RALEDQEKGLGEYDVTVTDEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLE 220

Query: 245 IADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           IA+  L + +   DK G    D+  L+   ++  G  V              A+  L   
Sbjct: 221 IAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDVNA------------ALHYLAR- 265

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
            +I+ G +Q    GR L+ +A++ +G+  P
Sbjct: 266 -LIEAGDLQSI--GRRLLIMAYEDIGLASP 292


>gi|257079358|ref|ZP_05573719.1| AAA ATPase [Enterococcus faecalis JH1]
 gi|256987388|gb|EEU74690.1| AAA ATPase [Enterococcus faecalis JH1]
          Length = 425

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 4/130 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR L+E  GQ       K+     +A+   L  ++  GPPG GKT++A  +A      
Sbjct: 9   MRPRHLDEVVGQQHLVGPGKIIRRMVEAKM--LSSMILYGPPGTGKTSIASAIAGSTNYA 66

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR  +     K    + A    +    +L +DEIHRL    ++ L P +E+ ++ +M+G 
Sbjct: 67  FRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPHLENGRI-IMIGA 125

Query: 141 GPSARSVKIN 150
                 + IN
Sbjct: 126 TTENPYITIN 135


>gi|256964749|ref|ZP_05568920.1| AAA ATPase [Enterococcus faecalis HIP11704]
 gi|307272829|ref|ZP_07554076.1| recombination factor protein RarA [Enterococcus faecalis TX0855]
 gi|256955245|gb|EEU71877.1| AAA ATPase [Enterococcus faecalis HIP11704]
 gi|306510443|gb|EFM79466.1| recombination factor protein RarA [Enterococcus faecalis TX0855]
          Length = 425

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 4/130 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR L+E  GQ       K+     +A+   L  ++  GPPG GKT++A  +A      
Sbjct: 9   MRPRHLDEVVGQQHLVGPGKIIRRMVEAKM--LSSMILYGPPGTGKTSIASAIAGSTNYA 66

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR  +     K    + A    +    +L +DEIHRL    ++ L P +E+ ++ +M+G 
Sbjct: 67  FRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPHLENGRI-IMIGA 125

Query: 141 GPSARSVKIN 150
                 + IN
Sbjct: 126 TTENPYITIN 135


>gi|257452139|ref|ZP_05617438.1| recombination factor protein RarA [Fusobacterium sp. 3_1_5R]
 gi|257466067|ref|ZP_05630378.1| recombination factor protein RarA [Fusobacterium gonidiaformans
           ATCC 25563]
 gi|315917223|ref|ZP_07913463.1| ATPase [Fusobacterium gonidiaformans ATCC 25563]
 gi|317058684|ref|ZP_07923169.1| ATPase [Fusobacterium sp. 3_1_5R]
 gi|313684360|gb|EFS21195.1| ATPase [Fusobacterium sp. 3_1_5R]
 gi|313691098|gb|EFS27933.1| ATPase [Fusobacterium gonidiaformans ATCC 25563]
          Length = 410

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 101/228 (44%), Gaps = 45/228 (19%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP++L+E  GQ +       L+  IE  +     L + +F GPPG GK+TL ++++  +
Sbjct: 18  LRPQSLDEIFGQEKLLGKHGVLRKLIETGR-----LTNSIFFGPPGCGKSTLGEIISHTM 72

Query: 79  GVNFRSTSGPVIAKAGDLAALLT----NLE---DRDVLFIDEIHRLSIIVEEILYPAMED 131
              F S +    A   D+  ++     N+E    + +LF+DEIHR + + ++ L    E+
Sbjct: 73  DCAFESLNA-TTASLQDIKEVVLRAKRNVEYYQKKTILFLDEIHRFNKLQQDALLSYCEN 131

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTR--VGLLTNPLQDRFGIPIRLNFYEIEDLK 189
                                 F LI ATT      L N L  R  +       E ++++
Sbjct: 132 --------------------GTFILIGATTENPYYSLNNALLSRVMV-FEFKSLEKKEIQ 170

Query: 190 TIVQRGAKLTGLAVT---DEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
            I++R     G++++   +E   E+A   +G  R+A   L   ++  +
Sbjct: 171 QILKRAQTKIGISLSPFLEEVMSEMA---QGDSRVALNYLELYQNLKD 215


>gi|257082202|ref|ZP_05576563.1| recombination factor protein RarA [Enterococcus faecalis E1Sol]
 gi|257416415|ref|ZP_05593409.1| recombination factor protein RarA [Enterococcus faecalis AR01/DG]
 gi|256990232|gb|EEU77534.1| recombination factor protein RarA [Enterococcus faecalis E1Sol]
 gi|257158243|gb|EEU88203.1| recombination factor protein RarA [Enterococcus faecalis ARO1/DG]
          Length = 425

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 4/130 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR L+E  GQ       K+     +A+   L  ++  GPPG GKT++A  +A      
Sbjct: 9   MRPRHLDEVVGQQHLVDPGKIIRRMVEAKM--LSSMILYGPPGTGKTSIASAIAGSTNYA 66

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR  +     K    + A    +    +L +DEIHRL    ++ L P +E+ ++ +M+G 
Sbjct: 67  FRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPHLENGRI-IMIGA 125

Query: 141 GPSARSVKIN 150
                 + IN
Sbjct: 126 TTENPYITIN 135


>gi|229549682|ref|ZP_04438407.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis
           ATCC 29200]
 gi|255972380|ref|ZP_05422966.1| recombination factor protein RarA [Enterococcus faecalis T1]
 gi|300861178|ref|ZP_07107265.1| recombination factor protein RarA [Enterococcus faecalis TUSoD
           Ef11]
 gi|312951281|ref|ZP_07770182.1| recombination factor protein RarA [Enterococcus faecalis TX0102]
 gi|229305162|gb|EEN71158.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis
           ATCC 29200]
 gi|255963398|gb|EET95874.1| recombination factor protein RarA [Enterococcus faecalis T1]
 gi|300850217|gb|EFK77967.1| recombination factor protein RarA [Enterococcus faecalis TUSoD
           Ef11]
 gi|310630717|gb|EFQ14000.1| recombination factor protein RarA [Enterococcus faecalis TX0102]
 gi|315152587|gb|EFT96603.1| recombination factor protein RarA [Enterococcus faecalis TX0031]
 gi|315159893|gb|EFU03910.1| recombination factor protein RarA [Enterococcus faecalis TX0312]
          Length = 425

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 4/130 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR L+E  GQ       K+     +A+   L  ++  GPPG GKT++A  +A      
Sbjct: 9   MRPRHLDEVVGQQHLVGPGKIIRRMVEAKM--LSSMILYGPPGTGKTSIASAIAGSTNYA 66

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR  +     K    + A    +    +L +DEIHRL    ++ L P +E+ ++ +M+G 
Sbjct: 67  FRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPHLENGRI-IMIGA 125

Query: 141 GPSARSVKIN 150
                 + IN
Sbjct: 126 TTENPYITIN 135


>gi|315633927|ref|ZP_07889216.1| replication-associated recombination protein A [Aggregatibacter
           segnis ATCC 33393]
 gi|315477177|gb|EFU67920.1| replication-associated recombination protein A [Aggregatibacter
           segnis ATCC 33393]
          Length = 446

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 57/121 (47%), Gaps = 19/121 (15%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP TL ++ GQ       K   +A +A    +  ++F GPPG GKTTLA+++A+ +   
Sbjct: 20  MRPTTLAQYCGQSHLLGEGKPLRKAIEA--GYVHSMIFWGPPGTGKTTLAEIIAQRIQAE 77

Query: 82  FRSTSGPVI-----------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
               S               AK   LA L      R +LF+DE+HR +   ++   P +E
Sbjct: 78  VERISAVTSGIKEIREAIEKAKQNKLAGL------RTILFVDEVHRFNKSQQDAFLPHIE 131

Query: 131 D 131
           D
Sbjct: 132 D 132


>gi|307275918|ref|ZP_07557051.1| recombination factor protein RarA [Enterococcus faecalis TX2134]
 gi|306507248|gb|EFM76385.1| recombination factor protein RarA [Enterococcus faecalis TX2134]
          Length = 425

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 4/130 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR L+E  GQ       K+     +A+   L  ++  GPPG GKT++A  +A      
Sbjct: 9   MRPRHLDEVVGQQHLVGPGKIIRRMVEAKM--LSSMILYGPPGTGKTSIASAIAGSTNYA 66

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR  +     K    + A    +    +L +DEIHRL    ++ L P +E+ ++ +M+G 
Sbjct: 67  FRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPHLENGRI-IMIGA 125

Query: 141 GPSARSVKIN 150
                 + IN
Sbjct: 126 TTENPYITIN 135


>gi|257084820|ref|ZP_05579181.1| recombination factor protein RarA [Enterococcus faecalis Fly1]
 gi|256992850|gb|EEU80152.1| recombination factor protein RarA [Enterococcus faecalis Fly1]
          Length = 425

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 4/130 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR L+E  GQ       K+     +A+   L  ++  GPPG GKT++A  +A      
Sbjct: 9   MRPRHLDEVVGQQHLVGPGKIIRRMVEAKM--LSSMILYGPPGTGKTSIASAIAGSTNYA 66

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR  +     K    + A    +    +L +DEIHRL    ++ L P +E+ ++ +M+G 
Sbjct: 67  FRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPHLENGRI-IMIGA 125

Query: 141 GPSARSVKIN 150
                 + IN
Sbjct: 126 TTENPYITIN 135


>gi|225075711|ref|ZP_03718910.1| hypothetical protein NEIFLAOT_00727 [Neisseria flavescens
           NRL30031/H210]
 gi|224952982|gb|EEG34191.1| hypothetical protein NEIFLAOT_00727 [Neisseria flavescens
           NRL30031/H210]
          Length = 435

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 66/143 (46%), Gaps = 17/143 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP TL++  GQ   +     L+V +E  K  +     +L  GPPG+GKTTLA+++A+  
Sbjct: 17  LRPHTLDDVVGQEHLIGEGKPLRVAVEGGKPHS-----MLLWGPPGVGKTTLARILAQSF 71

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
              F   S  V +   D+   +   E         +LF+DE+HR +   ++   P +E  
Sbjct: 72  NAQFLPVSA-VFSGVKDIRGAIDKAEIALQQGRATILFVDEVHRFNKAQQDAFLPYVESG 130

Query: 133 QLDLM--VGEGPSARSVKINLSR 153
            L  +    E PS       LSR
Sbjct: 131 LLTFIGATTENPSFEVNPALLSR 153


>gi|83593992|ref|YP_427744.1| recombination factor protein RarA [Rhodospirillum rubrum ATCC
           11170]
 gi|83576906|gb|ABC23457.1| Recombination protein MgsA [Rhodospirillum rubrum ATCC 11170]
          Length = 439

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 49/148 (33%), Positives = 72/148 (48%), Gaps = 19/148 (12%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKAR---AEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPR L E  GQ     +  V  +    R   A  L  V+  GPPG GKTT+A+++A   
Sbjct: 18  LRPRQLAEVVGQ-----DHLVGPDGPLGRMTAAHRLASVVLWGPPGCGKTTIARLLADST 72

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDF 132
            ++F   S  V A   DL  + T   +R       +LFIDEIHR +   ++   P +ED 
Sbjct: 73  DLHFEPLSA-VFAGVADLRKIFTAARERRTVGRGTLLFIDEIHRFNRAQQDGFLPYVEDG 131

Query: 133 QLDLMVGEGPSARSVKIN---LSRFTLI 157
            + ++VG      S ++N   LSR  ++
Sbjct: 132 TV-VLVGATTENPSFELNAALLSRCQVL 158


>gi|257422233|ref|ZP_05599223.1| recombination factor protein rarA [Enterococcus faecalis X98]
 gi|257164057|gb|EEU94017.1| recombination factor protein rarA [Enterococcus faecalis X98]
 gi|315157272|gb|EFU01289.1| recombination factor protein RarA [Enterococcus faecalis TX0043]
          Length = 425

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 4/130 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR L+E  GQ       K+     +A+   L  ++  GPPG GKT++A  +A      
Sbjct: 9   MRPRHLDEVVGQQHLVGPGKIIRRMVEAKM--LSSMILYGPPGTGKTSIASAIAGSTNYA 66

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR  +     K    + A    +    +L +DEIHRL    ++ L P +E+ ++ +M+G 
Sbjct: 67  FRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPHLENGRI-IMIGA 125

Query: 141 GPSARSVKIN 150
                 + IN
Sbjct: 126 TTENPYITIN 135


>gi|256959292|ref|ZP_05563463.1| recombination factor protein RarA [Enterococcus faecalis DS5]
 gi|256949788|gb|EEU66420.1| recombination factor protein RarA [Enterococcus faecalis DS5]
 gi|315034534|gb|EFT46466.1| recombination factor protein RarA [Enterococcus faecalis TX0027]
          Length = 425

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 4/130 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR L+E  GQ       K+     +A+   L  ++  GPPG GKT++A  +A      
Sbjct: 9   MRPRHLDEVVGQQHLVGPGKIIRRMVEAKM--LSSMILYGPPGTGKTSIASAIAGSTNYA 66

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR  +     K    + A    +    +L +DEIHRL    ++ L P +E+ ++ +M+G 
Sbjct: 67  FRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPHLENGRI-IMIGA 125

Query: 141 GPSARSVKIN 150
                 + IN
Sbjct: 126 TTENPYITIN 135


>gi|308181125|ref|YP_003925253.1| recombination factor protein RarA [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|308046616|gb|ADN99159.1| recombination factor protein RarA [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 426

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 4/130 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+TL++  GQ +     K+     KA+   L  ++  GPPG GKT++A  +A      
Sbjct: 9   MRPKTLKDVVGQQQLVGPGKIIARMVKAKR--LSSMILYGPPGTGKTSIASAIAGSTKYA 66

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR  +    +K    + A    +    +L +DEIHRL    ++ L P +E  ++ +++G 
Sbjct: 67  FRMLNAATDSKKQLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPHLESGRI-ILIGA 125

Query: 141 GPSARSVKIN 150
                 + IN
Sbjct: 126 TTENPYISIN 135


>gi|29376501|ref|NP_815655.1| recombination factor protein RarA [Enterococcus faecalis V583]
 gi|29343965|gb|AAO81725.1| ATPase, AAA family [Enterococcus faecalis V583]
          Length = 425

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 4/130 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR L+E  GQ       K+     +A+   L  ++  GPPG GKT++A  +A      
Sbjct: 9   MRPRHLDEVVGQQHLVGPGKIIRRMVEAKM--LSSMILYGPPGTGKTSIASAIAGSTNYA 66

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR  +     K    + A    +    +L +DEIHRL    ++ L P +E+ ++ +M+G 
Sbjct: 67  FRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPHLENGRI-IMIGA 125

Query: 141 GPSARSVKIN 150
                 + IN
Sbjct: 126 TTENPYITIN 135


>gi|28378917|ref|NP_785809.1| recombination factor protein RarA [Lactobacillus plantarum WCFS1]
 gi|254557122|ref|YP_003063539.1| recombination factor protein RarA [Lactobacillus plantarum JDM1]
 gi|300769682|ref|ZP_07079565.1| crossover junction endodeoxyribonuclease [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|28271754|emb|CAD64660.1| chromosome segregation helicase (putative) [Lactobacillus plantarum
           WCFS1]
 gi|254046049|gb|ACT62842.1| recombination factor protein RarA [Lactobacillus plantarum JDM1]
 gi|300492725|gb|EFK27910.1| crossover junction endodeoxyribonuclease [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
          Length = 426

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 4/130 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+TL++  GQ +     K+     KA+   L  ++  GPPG GKT++A  +A      
Sbjct: 9   MRPKTLKDVVGQQQLVGPGKIIARMVKAKR--LSSMILYGPPGTGKTSIASAIAGSTKYA 66

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR  +    +K    + A    +    +L +DEIHRL    ++ L P +E  ++ +++G 
Sbjct: 67  FRMLNAATDSKKQLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPHLESGRI-ILIGA 125

Query: 141 GPSARSVKIN 150
                 + IN
Sbjct: 126 TTENPYISIN 135


>gi|312171938|emb|CBX80195.1| Uncharacterized protein ycaJ [Erwinia amylovora ATCC BAA-2158]
          Length = 447

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 71/146 (48%), Gaps = 17/146 (11%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
            SRN  Q  A  + +RPRTL E+ GQ   + A   L   IEA +     L  ++  GPPG
Sbjct: 8   FSRNEFQPLA--ARMRPRTLAEYIGQQHLLAAGKPLPRAIEAGQ-----LHSMILWGPPG 60

Query: 65  LGKTTLAQVVARELGVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GKTTLA+++      +       TSG   I +A + A    +   R +LF+DE+HR + 
Sbjct: 61  TGKTTLAEIIGHYGQADVERISAVTSGVKDIREAIECARQNRHAGRRTILFVDEVHRFNK 120

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPS 143
             ++   P +ED  +  +    E PS
Sbjct: 121 SQQDAFLPHIEDGTITFIGATTENPS 146


>gi|295113243|emb|CBL31880.1| Recombination protein MgsA [Enterococcus sp. 7L76]
 gi|315161375|gb|EFU05392.1| recombination factor protein RarA [Enterococcus faecalis TX0645]
 gi|323481114|gb|ADX80553.1| recombination factor protein RarA [Enterococcus faecalis 62]
          Length = 425

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 4/130 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR L+E  GQ       K+     +A+   L  ++  GPPG GKT++A  +A      
Sbjct: 9   MRPRHLDEVVGQQHLVGPGKIIRRMVEAKM--LSSMILYGPPGTGKTSIASAIAGSTNYA 66

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR  +     K    + A    +    +L +DEIHRL    ++ L P +E+ ++ +M+G 
Sbjct: 67  FRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPHLENGRI-IMIGA 125

Query: 141 GPSARSVKIN 150
                 + IN
Sbjct: 126 TTENPYITIN 135


>gi|292487820|ref|YP_003530695.1| hypothetical protein EAMY_1337 [Erwinia amylovora CFBP1430]
 gi|292899048|ref|YP_003538417.1| ATPase [Erwinia amylovora ATCC 49946]
 gi|291198896|emb|CBJ46006.1| putative ATPase [Erwinia amylovora ATCC 49946]
 gi|291553242|emb|CBA20287.1| Uncharacterized protein ycaJ [Erwinia amylovora CFBP1430]
          Length = 447

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 71/146 (48%), Gaps = 17/146 (11%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
            SRN  Q  A  + +RPRTL E+ GQ   + A   L   IEA +     L  ++  GPPG
Sbjct: 8   FSRNEFQPLA--ARMRPRTLAEYIGQRHLLAAWKPLPRAIEAGQ-----LHSMILWGPPG 60

Query: 65  LGKTTLAQVVARELGVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GKTTLA+++      +       TSG   I +A + A    +   R +LF+DE+HR + 
Sbjct: 61  TGKTTLAEIIGHYGQADVERISAVTSGVKDIREAIERARQNRHAGRRTILFVDEVHRFNK 120

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPS 143
             ++   P +ED  +  +    E PS
Sbjct: 121 SQQDAFLPHIEDGTITFIGATTENPS 146


>gi|194365713|ref|YP_002028323.1| recombination factor protein RarA [Stenotrophomonas maltophilia
           R551-3]
 gi|194348517|gb|ACF51640.1| AAA ATPase central domain protein [Stenotrophomonas maltophilia
           R551-3]
          Length = 453

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 95/221 (42%), Gaps = 41/221 (18%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL+E  GQ   +   S L+  +E+ +  +     ++  GPPG GKTTLA ++A   
Sbjct: 29  MRPRTLDEMVGQKRLLAPDSALRRAVESGRVHS-----MILWGPPGCGKTTLALLLAEYS 83

Query: 79  GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
              FR+ S      P + +    AA       R VLF+DE+HR +   ++   P +E   
Sbjct: 84  DAEFRAISAVLSGLPEVRQVLAEAAQRFAEGRRTVLFVDEVHRFNKAQQDAFLPHIERGT 143

Query: 134 LDLMVGEGPSARSVKIN---LSRFTL-----IAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           + L VG      S ++N   LSR  +     ++ T  V  L   L DR            
Sbjct: 144 I-LFVGATTENPSFELNSALLSRCRVHVLEGVSPTDIVEALERALGDR------------ 190

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
                  +RG    G+ V  E   EIA  + G  R A  LL
Sbjct: 191 -------ERGLGEEGIEVAPELLLEIATAADGDVRRALTLL 224


>gi|85715102|ref|ZP_01046086.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [Nitrobacter sp. Nb-311A]
 gi|85698017|gb|EAQ35890.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [Nitrobacter sp. Nb-311A]
          Length = 443

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 65/135 (48%), Gaps = 10/135 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+TL +  GQ              + R+  L  ++F GPPG GKTT+A+++A    ++
Sbjct: 30  LRPQTLPDVVGQDHILGPDGALTRMLETRS--LGSLIFWGPPGTGKTTVARLLADATALH 87

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F   S  V +   DL  +      R       +LF+DE+HR +   ++   P MED  + 
Sbjct: 88  FEQLSA-VFSGVADLKKVFDAARARRESGTGTLLFVDEVHRFNRAQQDSFLPVMEDGTV- 145

Query: 136 LMVGEGPSARSVKIN 150
           ++VG      S ++N
Sbjct: 146 VLVGATTENPSFELN 160


>gi|3136020|emb|CAA19102.1| hypothetical protein MLCB1259.27 [Mycobacterium leprae]
          Length = 447

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 87/184 (47%), Gaps = 38/184 (20%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP +L+E  GQ   +   S L+  +E +   +  L      GPPG GKTTLA ++++  
Sbjct: 31  MRPASLDELVGQGHLLAPGSPLRRLVEGSGVVSAILH-----GPPGCGKTTLAALISQAT 85

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDF 132
           G  F + S  + A   D+ A+L           R VLFIDE+HR S   ++ L  A+E+ 
Sbjct: 86  GHRFEALSA-LSAGVKDVRAVLKIARSALLSGKRTVLFIDEVHRFSKTQQDALLSAVENR 144

Query: 133 QLDLMVG--EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
            + L+    E PS          F+++A          PL  R  I ++L     +D++ 
Sbjct: 145 VVLLVAATTENPS----------FSVVA----------PLLSRSLI-LQLRPLNADDIRA 183

Query: 191 IVQR 194
           +VQR
Sbjct: 184 VVQR 187


>gi|76787547|ref|YP_330532.1| recombination factor protein RarA [Streptococcus agalactiae A909]
 gi|77405039|ref|ZP_00782139.1| ATPase, AAA family [Streptococcus agalactiae H36B]
 gi|76562604|gb|ABA45188.1| ATPase, AAA family [Streptococcus agalactiae A909]
 gi|77176333|gb|EAO79102.1| ATPase, AAA family [Streptococcus agalactiae H36B]
          Length = 422

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR + E  GQ     N K+      A    L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPRNINEIIGQQHLVGNGKIIDRMVAA--NMLSSMILYGPPGIGKTSIASAIAGTTKYA 66

Query: 82  FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +  V +K       + A     L    VL +DEIHRL    ++ L P +E+  + +
Sbjct: 67  FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLENGNI-I 121

Query: 137 MVG 139
           M+G
Sbjct: 122 MIG 124


>gi|294085984|ref|YP_003552744.1| ATPase [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292665559|gb|ADE40660.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 463

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 72/144 (50%), Gaps = 12/144 (8%)

Query: 9   SRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           +++V  +D  ++  LRPRTL++  GQ +        +    AR   L  ++  GPPG GK
Sbjct: 31  NKDVPPKDVPLAEALRPRTLDDVVGQ-DGLLGEDGRLRQMLARGN-LASIILWGPPGTGK 88

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIV 121
           TT+A+++A    + F   S  V     DL  + T  E       R +LF+DE+HR +   
Sbjct: 89  TTIARLLADAASMEFEPVSA-VFDGVADLRKIFTRAETRLRDGKRTLLFVDEVHRFNKAQ 147

Query: 122 EEILYPAMEDFQLDLM--VGEGPS 143
           ++ L P +ED  + L+    E PS
Sbjct: 148 QDGLLPRVEDGTVTLVGATTENPS 171


>gi|153941104|ref|YP_001391867.1| recombination factor protein RarA [Clostridium botulinum F str.
           Langeland]
 gi|152937000|gb|ABS42498.1| ATPase, AAA family [Clostridium botulinum F str. Langeland]
 gi|295319891|gb|ADG00269.1| ATPase, AAA family [Clostridium botulinum F str. 230613]
          Length = 416

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 111/257 (43%), Gaps = 26/257 (10%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           L+RP+ LE+F GQ    S  K      K ++  + + +F GPPG GKTTLA ++A  +  
Sbjct: 7   LMRPKKLEDFVGQKHILSENKPLYNLMKNKS--ICNSIFYGPPGTGKTTLANIMANYVDK 64

Query: 81  NFR--STSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
            F   + +   I    ++ + + +L +    VL+IDE+   +   ++ L   +ED ++ L
Sbjct: 65  KFYRLNATTASIKDIQEITSSINSLLNYSGVVLYIDELQHFTKKQQQALLEFIEDGRVIL 124

Query: 137 MVG--EGPSARSVKINLSRFTLIAAT--TRVGLL------TNPLQDRFGIPIRLNFYEIE 186
           +    E P     K  LSR  +       R  ++       N L D+ GI I+ +F  +E
Sbjct: 125 IASTTENPYFVIHKAILSRCNIFQFKPLNREDIILGLEKAINKLIDK-GINIKYSFESLE 183

Query: 187 DLKTIVQ----RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV-----AH 237
            +  I Q    +   +  LAV       I +       +A   +R      E      A 
Sbjct: 184 YIGEICQGDYRKAYNILELAVNSHCGFNIEITLDYIESLAQSNIRADATGDEYYNILSAF 243

Query: 238 AKTITREIADAALLRLA 254
            K+I    ADAA+  LA
Sbjct: 244 QKSIRGSDADAAVHYLA 260


>gi|296116064|ref|ZP_06834684.1| recombination factor protein RarA [Gluconacetobacter hansenii ATCC
           23769]
 gi|295977418|gb|EFG84176.1| recombination factor protein RarA [Gluconacetobacter hansenii ATCC
           23769]
          Length = 431

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 67/138 (48%), Gaps = 14/138 (10%)

Query: 22  LRPRTLEEFTGQVE-ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           LRP  +E+  GQ      +  +    A  R   L  ++F GPPG GKTTLA+++A   G+
Sbjct: 17  LRPERIEDVIGQAHLMAPDRPIGRMVASGR---LSSMIFWGPPGTGKTTLARILAARSGM 73

Query: 81  NFRSTSGPVIAKAGDLAALLTNLEDRD--------VLFIDEIHRLSIIVEEILYPAMEDF 132
            F   S  V++   DL   L   +           VLF+DEIHR +   ++ L P +ED 
Sbjct: 74  AFEQISA-VMSGMADLKKALARAQGLRQQGQTKGMVLFVDEIHRWNKAQQDALLPYVEDG 132

Query: 133 QLDLMVGEGPSARSVKIN 150
            + +++G      S ++N
Sbjct: 133 TI-VLIGATTENPSFELN 149


>gi|118466446|ref|YP_882617.1| recombination factor protein RarA [Mycobacterium avium 104]
 gi|118167733|gb|ABK68630.1| ATP/GTP-binding protein [Mycobacterium avium 104]
          Length = 446

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 90/184 (48%), Gaps = 38/184 (20%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP +L+E  GQ   +   S L+  +E +      +   +  GPPG GKTTLA ++++  
Sbjct: 31  MRPASLDEVVGQDHLLAPGSPLRRLVEGS-----GVASAILYGPPGSGKTTLAALISQAT 85

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           G  F + S  + A   D+ A++ +        ++ VLFIDE+HR S   ++ L  A+E+ 
Sbjct: 86  GRRFEALSA-LSAGVKDVRAVIESARTALLRGEQTVLFIDEVHRFSKTQQDALLSAVENR 144

Query: 133 QLDLMVG--EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
            + L+    E PS          F+++A          PL  R  I ++L     +D++T
Sbjct: 145 VVLLVAATTENPS----------FSVVA----------PLLSRSLI-LQLRPLSADDIRT 183

Query: 191 IVQR 194
           +V+R
Sbjct: 184 VVRR 187


>gi|104773804|ref|YP_618784.1| recombination factor protein RarA [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|116513810|ref|YP_812716.1| recombination factor protein RarA [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|103422885|emb|CAI97547.1| Putative ATPase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
 gi|116093125|gb|ABJ58278.1| Recombination protein MgsA [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|325125468|gb|ADY84798.1| Chromosomal segregation helicase [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 434

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 63/126 (50%), Gaps = 18/126 (14%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+++++  GQ       K+     +AR   L  ++  GPPG+GKT++A  +A      
Sbjct: 8   MRPQSIDQVVGQQHLVGPKKIIRRMVEARQ--LSSMILYGPPGIGKTSIASAIAGSSKYA 65

Query: 82  FRSTSGPV--------IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           FR  +           +A  G ++  +       VL +DEIHRL+ + ++ L P +E  Q
Sbjct: 66  FRQLNAATDGQKELSQVAAEGKMSGTV-------VLLLDEIHRLNKVKQDFLLPLLESGQ 118

Query: 134 LDLMVG 139
           + +M+G
Sbjct: 119 V-IMIG 123


>gi|315287521|gb|EFU46932.1| replication-associated recombination protein A [Escherichia coli MS
           110-3]
          Length = 428

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 63/129 (48%), Gaps = 9/129 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  L ++ GQ    +  K    A +A    L  ++  GPPG GKTTLA+V+AR    +
Sbjct: 1   MRPENLAQYIGQQHLLAVGKPLPRAIEA--GHLHSMILWGPPGTGKTTLAEVIARYANAD 58

Query: 82  FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
                  TSG   I +A + A    N   R +LF+DE+HR +   ++   P +ED  +  
Sbjct: 59  VERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 118

Query: 137 M--VGEGPS 143
           +    E PS
Sbjct: 119 IGATTENPS 127


>gi|319404398|emb|CBI78001.1| ATPase, AAA family [Bartonella rochalimae ATCC BAA-1498]
          Length = 439

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 105/234 (44%), Gaps = 39/234 (16%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKAR---AEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPR+L E  GQ     N  +  E   +R   + +   ++F GPPG GKTT+A+++A E 
Sbjct: 24  MRPRSLHEVVGQ-----NHLIGAEGFLSRMVASGSFSSMIFWGPPGTGKTTVARLLALET 78

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDF 132
              F   S  +     +L  +      R       +LFIDEIHR +   ++   P MED 
Sbjct: 79  NFAFEQVSA-IFTGISELKKIFEVARARLMSGCQTLLFIDEIHRFNRSQQDSFLPFMEDG 137

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            + ++VG      S ++N       A  +R  +LT    D   + I            ++
Sbjct: 138 TI-ILVGATTENPSFELN------AALLSRARVLTFRAHDNASLDI------------LL 178

Query: 193 QRGAKLTGLAVT-DEAACEIAMR-SRGTPRIAGRL---LRRVRDFAEVAHAKTI 241
           +R  K+ G ++  D+ A E+ +R S G  R A  L   + R     EV +A+T+
Sbjct: 179 KRAEKVEGRSLPLDDHAREVLIRISDGDARAALTLAEDIWRAAQSEEVFNAETL 232


>gi|307825885|ref|ZP_07656100.1| AAA ATPase central domain protein [Methylobacter tundripaludum
           SV96]
 gi|307733004|gb|EFO03866.1| AAA ATPase central domain protein [Methylobacter tundripaludum
           SV96]
          Length = 435

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 59/118 (50%), Gaps = 12/118 (10%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEA-AKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           +RP  L ++ GQ       K   EA A  R   L  ++F GPPG GKTTLA+++A+    
Sbjct: 14  MRPTELADYVGQQHILKPGKPLYEAIASGR---LHSMIFWGPPGTGKTTLARLIAQHSDA 70

Query: 81  NFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131
            F   S  V++   ++ A +   +        R +LF+DE+HR +   ++   P +ED
Sbjct: 71  EFMPISA-VLSGVKEIRAAVAEAKKIQLEQHRRTILFVDEVHRFNKSQQDAFLPHVED 127


>gi|41407170|ref|NP_960006.1| recombination factor protein RarA [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41395521|gb|AAS03389.1| hypothetical protein MAP_1072 [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 450

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 90/184 (48%), Gaps = 38/184 (20%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP +L+E  GQ   +   S L+  +E +      +   +  GPPG GKTTLA ++++  
Sbjct: 35  MRPASLDEVVGQDHLLAPGSPLRRLVEGS-----GVASAILYGPPGSGKTTLAALISQAT 89

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           G  F + S  + A   D+ A++ +        ++ VLFIDE+HR S   ++ L  A+E+ 
Sbjct: 90  GRRFEALSA-LSAGVKDVRAVIESARTALLRGEQTVLFIDEVHRFSKTQQDALLSAVENR 148

Query: 133 QLDLMVG--EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
            + L+    E PS          F+++A          PL  R  I ++L     +D++T
Sbjct: 149 VVLLVAATTENPS----------FSVVA----------PLLSRSLI-LQLRPLSADDIRT 187

Query: 191 IVQR 194
           +V+R
Sbjct: 188 VVRR 191


>gi|323359961|ref|YP_004226357.1| ATPase [Microbacterium testaceum StLB037]
 gi|323276332|dbj|BAJ76477.1| ATPase [Microbacterium testaceum StLB037]
          Length = 469

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 66/134 (49%), Gaps = 13/134 (9%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP +L+E  GQ   +   S L        + + +   V+  GPPG GKTTLAQ +AR  
Sbjct: 18  MRPTSLDEVAGQGHLLRPGSPLVTLATTDSSASGSAVSVILWGPPGTGKTTLAQAIARSS 77

Query: 79  GVNFRSTSGPVIAKAGDLAALLTN-LEDRD------VLFIDEIHRLSIIVEEILYPAMED 131
           G  F   S  + A   D+  ++   L  RD      +LF+DEIHR +   ++ L P +E+
Sbjct: 78  GRRFVELSA-ITAGVKDVREVMQEALTQRDLYGQSTILFLDEIHRFTKAQQDALLPGVEN 136

Query: 132 FQLDLMVG--EGPS 143
             + L+    E PS
Sbjct: 137 GWVVLIAATTENPS 150


>gi|319943868|ref|ZP_08018149.1| replication-associated recombination protein A [Lautropia mirabilis
           ATCC 51599]
 gi|319743101|gb|EFV95507.1| replication-associated recombination protein A [Lautropia mirabilis
           ATCC 51599]
          Length = 490

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 68/144 (47%), Gaps = 17/144 (11%)

Query: 21  LLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           LLRP TL+E  GQ         L++  E+ +  +     ++  GPPG+GKTTLA++ A  
Sbjct: 51  LLRPATLDEVIGQKHLLGPERPLRLAFESGQPHS-----MILWGPPGVGKTTLARLTANA 105

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMED 131
            G  F + S  V +   D+ + +   E         +LFIDEIHR +   ++ L P  E 
Sbjct: 106 FGHEFIALSA-VFSGVKDIRSAMEQAERNLQAGRHTILFIDEIHRFNKAQQDALLPYAES 164

Query: 132 FQLDLM--VGEGPSARSVKINLSR 153
             + L+    E PS       LSR
Sbjct: 165 GLITLIGATTENPSFEVNSALLSR 188


>gi|268590184|ref|ZP_06124405.1| replication-associated recombination protein A [Providencia
           rettgeri DSM 1131]
 gi|291314464|gb|EFE54917.1| replication-associated recombination protein A [Providencia
           rettgeri DSM 1131]
          Length = 447

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 71/147 (48%), Gaps = 11/147 (7%)

Query: 6   GLLSRNVSQEDAD--ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           G LS + SQ +     + +RP TLE++ GQ    +  K    A KA    L  ++  GPP
Sbjct: 2   GNLSLDFSQNEFQPLAARMRPETLEQYIGQKHLLAEGKPLPRAIKA--GHLHSMILWGPP 59

Query: 64  GLGKTTLAQVVARELGVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
           G GKTTLA+++      +       TSG   I ++ + A    +   R +LF+DE+HR +
Sbjct: 60  GTGKTTLAEIIGNYAQADIERISAVTSGIKEIRESIEKARQNRSAGRRTILFVDEVHRFN 119

Query: 119 IIVEEILYPAMEDFQLDLM--VGEGPS 143
              ++   P +ED  +  +    E PS
Sbjct: 120 KSQQDAFLPHIEDGTITFIGATTENPS 146


>gi|325204241|gb|ADY99694.1| magnesium chelatase, subunit ChlI family [Neisseria meningitidis
           M01-240355]
          Length = 436

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 66/143 (46%), Gaps = 17/143 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP TL++  GQ   +     L+V +E  K  +     +L  GPPG+GKTTLA+++A+  
Sbjct: 17  LRPHTLDDVVGQEHLIGEGKPLRVAVEGGKPHS-----MLLWGPPGVGKTTLARILAQSF 71

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
              F   S  V +   D+   +   E         +LF+DE+HR +   ++   P +E  
Sbjct: 72  NAQFLPVSA-VFSGVKDIRGAIDKAEIALQQGRATILFVDEVHRFNKAQQDAFLPYVESG 130

Query: 133 QLDLM--VGEGPSARSVKINLSR 153
            L  +    E PS       LSR
Sbjct: 131 LLTFIGATTENPSFEVNPALLSR 153


>gi|261392480|emb|CAX50029.1| putative ATPase [Neisseria meningitidis 8013]
          Length = 436

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 66/143 (46%), Gaps = 17/143 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP TL++  GQ   +     L+V +E  K  +     +L  GPPG+GKTTLA+++A+  
Sbjct: 17  LRPHTLDDVVGQEHLIGEGKPLRVAVEGGKPHS-----MLLWGPPGVGKTTLARILAQSF 71

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
              F   S  V +   D+   +   E         +LF+DE+HR +   ++   P +E  
Sbjct: 72  NAQFLPVSA-VFSGVKDIRGAIDKAEIALQQGRATILFVDEVHRFNKAQQDAFLPHVESG 130

Query: 133 QLDLM--VGEGPSARSVKINLSR 153
            L  +    E PS       LSR
Sbjct: 131 LLTFIGATTENPSFEVNPALLSR 153


>gi|225024225|ref|ZP_03713417.1| hypothetical protein EIKCOROL_01097 [Eikenella corrodens ATCC
           23834]
 gi|224943250|gb|EEG24459.1| hypothetical protein EIKCOROL_01097 [Eikenella corrodens ATCC
           23834]
          Length = 446

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 67/143 (46%), Gaps = 17/143 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP TL++  GQ   + A   ++V +E  +  +     +L  GPPG+GKTTLA+++A+  
Sbjct: 18  LRPHTLDDVVGQQHLIGAGKPMRVAVEGGQPHS-----MLLWGPPGVGKTTLARILAQSF 72

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
              F   S  V +   D+   +   E         +LF+DE+HR +   ++   P +E  
Sbjct: 73  NAQFLPVSA-VFSGVKDIREAVNKAEIALQQGRATILFVDEVHRFNKAQQDAFLPYVESG 131

Query: 133 QLDLM--VGEGPSARSVKINLSR 153
            L  +    E PS       LSR
Sbjct: 132 LLTFIGATTENPSFEVNPALLSR 154


>gi|325142473|gb|EGC64877.1| magnesium chelatase, subunit ChlI family [Neisseria meningitidis
           961-5945]
 gi|325198390|gb|ADY93846.1| magnesium chelatase, subunit ChlI family [Neisseria meningitidis
           G2136]
          Length = 436

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 66/143 (46%), Gaps = 17/143 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP TL++  GQ   +     L+V +E  K  +     +L  GPPG+GKTTLA+++A+  
Sbjct: 17  LRPHTLDDVVGQEHLIGEGKPLRVAVEGGKPHS-----MLLWGPPGVGKTTLARILAQSF 71

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
              F   S  V +   D+   +   E         +LF+DE+HR +   ++   P +E  
Sbjct: 72  NAQFLPVSA-VFSGVKDIRGAIDKAEIALQQGRATILFVDEVHRFNKAQQDAFLPHVESG 130

Query: 133 QLDLM--VGEGPSARSVKINLSR 153
            L  +    E PS       LSR
Sbjct: 131 LLTFIGATTENPSFEVNPALLSR 153


>gi|91209937|ref|YP_539923.1| recombination factor protein RarA [Escherichia coli UTI89]
 gi|117623076|ref|YP_851989.1| recombination factor protein RarA [Escherichia coli APEC O1]
 gi|218557800|ref|YP_002390713.1| recombination factor protein RarA [Escherichia coli S88]
 gi|237707118|ref|ZP_04537599.1| recombination factor protein RarA [Escherichia sp. 3_2_53FAA]
 gi|91071511|gb|ABE06392.1| putative polynucleotide enzyme [Escherichia coli UTI89]
 gi|115512200|gb|ABJ00275.1| putative polynucleotide enzyme [Escherichia coli APEC O1]
 gi|218364569|emb|CAR02255.1| recombination protein [Escherichia coli S88]
 gi|226898328|gb|EEH84587.1| recombination factor protein RarA [Escherichia sp. 3_2_53FAA]
 gi|281178026|dbj|BAI54356.1| putative polynucleotide enzyme [Escherichia coli SE15]
 gi|294490173|gb|ADE88929.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           IHE3034]
 gi|307627678|gb|ADN71982.1| recombination factor protein RarA [Escherichia coli UM146]
 gi|320196612|gb|EFW71235.1| recombination factor protein RarA [Escherichia coli WV_060327]
 gi|323953398|gb|EGB49264.1| ATPase [Escherichia coli H252]
 gi|323958199|gb|EGB53908.1| ATPase [Escherichia coli H263]
          Length = 447

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 63/129 (48%), Gaps = 9/129 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  L ++ GQ    +  K    A +A    L  ++  GPPG GKTTLA+V+AR    +
Sbjct: 20  MRPENLAQYIGQQHLLAVGKPLPRAIEA--GHLHSMILWGPPGTGKTTLAEVIARYANAD 77

Query: 82  FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
                  TSG   I +A + A    N   R +LF+DE+HR +   ++   P +ED  +  
Sbjct: 78  VERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 137

Query: 137 M--VGEGPS 143
           +    E PS
Sbjct: 138 IGATTENPS 146


>gi|92113453|ref|YP_573381.1| recombination factor protein RarA [Chromohalobacter salexigens DSM
           3043]
 gi|91796543|gb|ABE58682.1| Recombination protein MgsA [Chromohalobacter salexigens DSM 3043]
          Length = 469

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 69/143 (48%), Gaps = 17/143 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPR L+++ GQ   V     L+   E+   R+     ++  GPPG+GKTTLA ++A   
Sbjct: 43  MRPRRLDDYVGQEALVGPGKPLRRMAESGAVRS-----MILWGPPGVGKTTLADILADAS 97

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDV------LFIDEIHRLSIIVEEILYPAMEDF 132
           G      S  V+A   D+ A +    +  V      LF+DEIHRL+   ++ L P +E  
Sbjct: 98  GAMLERLSA-VMAGVKDIRAAVERAREGQVRGQPTLLFLDEIHRLNKSQQDALLPHVESG 156

Query: 133 QLDLM--VGEGPSARSVKINLSR 153
            L L+    E PS       LSR
Sbjct: 157 LLTLIGATTENPSFEVNSALLSR 179


>gi|88803489|ref|ZP_01119014.1| putative AAA family ATPase protein [Polaribacter irgensii 23-P]
 gi|88780501|gb|EAR11681.1| putative AAA family ATPase protein [Polaribacter irgensii 23-P]
          Length = 423

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 65/143 (45%), Gaps = 15/143 (10%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+TLE++  Q        +  +  K     +  ++  GPPG+GKTTLA ++A      
Sbjct: 9   IRPKTLEDYVSQQHLVGENGILTKLIKQGI--IPSLILWGPPGIGKTTLANIIATTSNRP 66

Query: 82  FRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           F + S           VI KA     L T      +LFIDEIHR S   ++ L  A+E  
Sbjct: 67  FYTLSAISSGVKDVRDVIEKAKKSGGLFT--AKNPILFIDEIHRFSKSQQDSLLGAVEKG 124

Query: 133 QLDLM--VGEGPSARSVKINLSR 153
            + L+    E PS   +   LSR
Sbjct: 125 WVTLIGATTENPSFEVIPALLSR 147


>gi|329938952|ref|ZP_08288326.1| ATP/GTP binding protein [Streptomyces griseoaurantiacus M045]
 gi|329301837|gb|EGG45730.1| ATP/GTP binding protein [Streptomyces griseoaurantiacus M045]
          Length = 453

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 66/129 (51%), Gaps = 13/129 (10%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFI-EAAKARAEA-LDHVLFVGPPGLGKTTLAQVVAR 76
           +RPR+L+E  GQ   ++  S L+  + E   A + A    V+  GPPG GKTTLA VV++
Sbjct: 27  MRPRSLDEVMGQQHLLKPGSPLRRLVGEGTSAGSPAGPSSVILWGPPGTGKTTLAYVVSK 86

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAM 129
                F   S  + A   ++ A++              VLF+DEIHR S   ++ L PA+
Sbjct: 87  ATNKRFVELSA-ITAGVKEVRAVIDGARRATGGYGTETVLFLDEIHRFSKAQQDSLLPAV 145

Query: 130 EDFQLDLMV 138
           E+  + L+ 
Sbjct: 146 ENRWVTLIA 154


>gi|220912773|ref|YP_002488082.1| recombination factor protein RarA [Arthrobacter chlorophenolicus
           A6]
 gi|219859651|gb|ACL39993.1| AAA ATPase central domain protein [Arthrobacter chlorophenolicus
           A6]
          Length = 466

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/135 (36%), Positives = 70/135 (51%), Gaps = 14/135 (10%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFV-GPPGLGKTTLAQVVARE 77
           +RPRTL++  GQ   +   S L++    A A   A    L + GPPG GKTTLA V+AR 
Sbjct: 37  MRPRTLDDVVGQQHLLGQGSPLRLLAAGADAAGPAGPSSLILWGPPGTGKTTLAHVIARG 96

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTN-LEDRD------VLFIDEIHRLSIIVEEILYPAME 130
            G  F   S  + A   D+  ++ + L  RD      VLF+DEIHR +   ++ L P +E
Sbjct: 97  PGRKFVELSA-ITAGVKDVRRVMDDALTARDLYKTTTVLFLDEIHRFNKAQQDALLPGVE 155

Query: 131 DFQLDLMVG--EGPS 143
           +  + L+    E PS
Sbjct: 156 NRWVVLVAATTENPS 170


>gi|71282024|ref|YP_269469.1| recombination factor protein RarA [Colwellia psychrerythraea 34H]
 gi|71147764|gb|AAZ28237.1| ATPase, AAA family [Colwellia psychrerythraea 34H]
          Length = 511

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 58/122 (47%), Gaps = 17/122 (13%)

Query: 22  LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP+TL ++ GQ       S L   IE     +     ++F GPPG GKTTLA+++A+  
Sbjct: 63  MRPKTLADYVGQQHILGGDSPLAQSIEQGHCHS-----LIFWGPPGSGKTTLAEIIAQHA 117

Query: 79  GVNFRS----TSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
                     TSG       I KA   A      + R VLF+DE+HR +   ++   P +
Sbjct: 118 NAEIERVSAVTSGIKEIRSAIEKAKLRAQGEGANKRRTVLFVDEVHRFNKSQQDAFLPHI 177

Query: 130 ED 131
           ED
Sbjct: 178 ED 179


>gi|25012002|ref|NP_736397.1| recombination factor protein RarA [Streptococcus agalactiae NEM316]
 gi|77412913|ref|ZP_00789117.1| ATPase, AAA family [Streptococcus agalactiae 515]
 gi|24413545|emb|CAD47623.1| Unknown [Streptococcus agalactiae NEM316]
 gi|77161053|gb|EAO72160.1| ATPase, AAA family [Streptococcus agalactiae 515]
          Length = 422

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR + E  GQ     N K+      A    L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPRNINEVIGQQHLVGNGKIIDRMVAA--NMLSSMILYGPPGIGKTSIASAIAGTTKYA 66

Query: 82  FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +  V +K       + A     L    VL +DEIHRL    ++ L P +E+  + +
Sbjct: 67  FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLENGNI-I 121

Query: 137 MVG 139
           M+G
Sbjct: 122 MIG 124


>gi|315640057|ref|ZP_07895182.1| AAA family ATPase [Enterococcus italicus DSM 15952]
 gi|315484185|gb|EFU74656.1| AAA family ATPase [Enterococcus italicus DSM 15952]
          Length = 423

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 62/130 (47%), Gaps = 4/130 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRTL+E  GQ       K+      A+   L  ++  GPPG GKT++A  +A      
Sbjct: 9   MRPRTLDEVVGQQHLVGPGKIIRRMVDAKL--LSSMILYGPPGTGKTSIASAIAGSTQFA 66

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR+ +     K    + A    +    +L +DE+HRL    ++ L P +E+ ++ +++G 
Sbjct: 67  FRTLNAATDTKKDLQIVAEEAKMSGTVILLLDEVHRLDKTKQDFLLPHLENGRI-ILIGA 125

Query: 141 GPSARSVKIN 150
                 + IN
Sbjct: 126 TTENPYITIN 135


>gi|119962942|ref|YP_948025.1| recombination factor protein RarA [Arthrobacter aurescens TC1]
 gi|119949801|gb|ABM08712.1| putative ATPase, AAA family [Arthrobacter aurescens TC1]
          Length = 497

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 66/135 (48%), Gaps = 14/135 (10%)

Query: 22  LRPRTLEEFTGQV----EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +RPR+L+E  GQ     +     ++   A  A       V+  GPPG GKTTLA V+AR 
Sbjct: 41  MRPRSLDEVVGQQHLLGQGSPLRQLAAGADAAGPAGPSSVILWGPPGTGKTTLAHVIARG 100

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTN-LEDRD------VLFIDEIHRLSIIVEEILYPAME 130
            G  F   S  + A   D+  ++   L  RD      VLF+DEIHR +   ++ L P +E
Sbjct: 101 PGRKFVELSA-ITAGVKDVRRVMDEALTARDLYKKTTVLFLDEIHRFNKAQQDALLPGVE 159

Query: 131 DFQLDLMVG--EGPS 143
           +  + L+    E PS
Sbjct: 160 NRWVVLVAATTENPS 174


>gi|257896971|ref|ZP_05676624.1| AAA ATPase [Enterococcus faecium Com12]
 gi|293378673|ref|ZP_06624832.1| recombination factor protein RarA [Enterococcus faecium PC4.1]
 gi|257833536|gb|EEV59957.1| AAA ATPase [Enterococcus faecium Com12]
 gi|292642713|gb|EFF60864.1| recombination factor protein RarA [Enterococcus faecium PC4.1]
          Length = 428

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 4/130 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRT++E  GQ       K+      AR   L  ++  GPPG GKT++A  +A      
Sbjct: 9   MRPRTIDEVVGQQHLVGEGKIIRRMVDARM--LSSMILYGPPGTGKTSIASAIAGSTNYA 66

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR  +    +K    + A    +    +L +DE+HRL    ++ L P +E  ++ +++G 
Sbjct: 67  FRMLNAATDSKKELQVVAEEAKMSGTVILLLDEVHRLDKTKQDFLLPHLESGRI-ILIGA 125

Query: 141 GPSARSVKIN 150
                 + IN
Sbjct: 126 TTENPYITIN 135


>gi|237748949|ref|ZP_04579429.1| recombination factor protein RarA [Oxalobacter formigenes OXCC13]
 gi|229380311|gb|EEO30402.1| recombination factor protein RarA [Oxalobacter formigenes OXCC13]
          Length = 430

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 106/245 (43%), Gaps = 46/245 (18%)

Query: 22  LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+ ++E  GQ         L+V  E+ +  +     ++  GPPG+GKTTLA+++A   
Sbjct: 10  LRPKNIDEVVGQQHLLGPGKPLRVAFESGEPHS-----MILWGPPGVGKTTLARLMADGF 64

Query: 79  GVNFRSTSGPVIAKAGDL-------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V++   D+         + +N   R +LF+DE+HR +   ++   P +E 
Sbjct: 65  NAEFIALSA-VLSGVKDIRDAVEHAKIIRSNSGRRTILFVDEVHRFNKSQQDAFLPHVES 123

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL--LTNPLQDRFGIPIRLNFYEIEDLK 189
                                 FT I ATT      + N L  R  + + L     +DL 
Sbjct: 124 --------------------GLFTFIGATTENPSFEVNNALLSRAAVYV-LQSLGNDDLN 162

Query: 190 TIVQRGAK--LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           T++ R     LT L ++ EA   + M + G  R   +LL  +   A+ A  K   + + D
Sbjct: 163 TLLTRALDEILTDLTLSGEARDMLVMSADGDAR---KLLNNLEITAQAATTK--KQAVID 217

Query: 248 AALLR 252
             LL+
Sbjct: 218 VTLLK 222


>gi|77409126|ref|ZP_00785840.1| ATPase, AAA family [Streptococcus agalactiae COH1]
 gi|77172254|gb|EAO75409.1| ATPase, AAA family [Streptococcus agalactiae COH1]
          Length = 422

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR + E  GQ     N K+      A    L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPRNINEVIGQQHLVGNGKIIDRMVAA--NMLSSMILYGPPGIGKTSIASAIAGTTKYA 66

Query: 82  FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +  V +K       + A     L    VL +DEIHRL    ++ L P +E+  + +
Sbjct: 67  FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLENGNI-I 121

Query: 137 MVG 139
           M+G
Sbjct: 122 MIG 124


>gi|317402140|gb|EFV82732.1| hypothetical protein HMPREF0005_00317 [Achromobacter xylosoxidans
           C54]
          Length = 446

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 66/142 (46%), Gaps = 15/142 (10%)

Query: 22  LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPRTL +  GQ         L+V  E+ +  +     ++F GPPG+GKTTLA+++A   
Sbjct: 22  LRPRTLADVVGQSHLLGPDKPLRVAFESGRPHS-----MIFWGPPGVGKTTLARLMADGF 76

Query: 79  GVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED-- 131
              F + S  +     I  A  +A +      R +LF+DE+HR +   ++   P +E   
Sbjct: 77  DAQFIAISAVLGGVKDIRDAVTVAQVAQGQGRRTILFVDEVHRFNKAQQDAFLPYVESGL 136

Query: 132 FQLDLMVGEGPSARSVKINLSR 153
           F       E PS       LSR
Sbjct: 137 FTFIGATTENPSFEVNSALLSR 158


>gi|241761401|ref|ZP_04759489.1| AAA ATPase central domain protein [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
 gi|241374308|gb|EER63805.1| AAA ATPase central domain protein [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
          Length = 449

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 63/135 (46%), Gaps = 13/135 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           ADI  LRP+ L +  GQ        +        A  L  ++  GPPG GKT++AQ++A 
Sbjct: 28  ADI--LRPKHLSDVIGQAHVTGENGII--GRMVAAGRLSSLILWGPPGTGKTSIAQLLAE 83

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130
            +G+ F   S  + +   DL  +    E       + +LFIDEIHR +   ++   P +E
Sbjct: 84  SVGIRFEMVSA-IFSGVADLKKIFLKAEHHRQQGRQTLLFIDEIHRFNKGQQDSFLPYIE 142

Query: 131 D--FQLDLMVGEGPS 143
           +  F L     E PS
Sbjct: 143 NGTFVLVGATTENPS 157


>gi|257888138|ref|ZP_05667791.1| AAA ATPase [Enterococcus faecium 1,141,733]
 gi|257824192|gb|EEV51124.1| AAA ATPase [Enterococcus faecium 1,141,733]
          Length = 428

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 4/130 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRT++E  GQ       K+      AR   L  ++  GPPG GKT++A  +A      
Sbjct: 9   MRPRTIDEVVGQQHLVGEGKIIRRMVDARM--LSSMILYGPPGTGKTSIASAIAGSTNYA 66

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR  +    +K    + A    +    +L +DE+HRL    ++ L P +E  ++ +++G 
Sbjct: 67  FRMLNAATDSKKELQVVAEEAKMSGTVILLLDEVHRLDKTKQDFLLPHLESGRI-ILIGA 125

Query: 141 GPSARSVKIN 150
                 + IN
Sbjct: 126 TTENPYITIN 135


>gi|254480362|ref|ZP_05093609.1| ATPase, AAA family protein [marine gamma proteobacterium HTCC2148]
 gi|214038945|gb|EEB79605.1| ATPase, AAA family protein [marine gamma proteobacterium HTCC2148]
          Length = 442

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 71/254 (27%), Positives = 111/254 (43%), Gaps = 36/254 (14%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP  L+ + GQ    +  K   E+   R   L  ++F GPPG+GKTTLA++ A     +
Sbjct: 25  LRPADLQSYAGQSHLLAPGKPLRESIDRRQ--LHSMIFWGPPGVGKTTLARIAAEAADAH 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-----RD-VLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F   S  V++   ++   +          RD VLF+DE+HR +   ++   P +ED  + 
Sbjct: 83  FLQISA-VLSGVKEIREAIAQARQHKSSGRDTVLFVDEVHRFNKSQQDAFLPYVEDGTV- 140

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           + VG      S ++N      + + TRV               +L   EI +L  +++RG
Sbjct: 141 IFVGATTENPSFELN----NALLSRTRV--------------YKLRSLEISELVGVLKRG 182

Query: 196 AKLTGLAVTDEAAC--EIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT-REIADAALLR 252
               G A      C   IA ++ G  R +  LL    D A+       T  E+  A+L R
Sbjct: 183 MDELGDAAQASQHCLELIATQADGDARRSINLLELAADLADDGEITEQTLEEVLQASLRR 242

Query: 253 LAIDKMG---FDQL 263
              DK G   +DQ+
Sbjct: 243 F--DKGGDLFYDQI 254


>gi|77411974|ref|ZP_00788304.1| ATPase, AAA family [Streptococcus agalactiae CJB111]
 gi|77162000|gb|EAO72981.1| ATPase, AAA family [Streptococcus agalactiae CJB111]
          Length = 422

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR + E  GQ     N K+      A    L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPRNINEVIGQQHLVGNGKIIDRMVAA--NMLSSMILYGPPGIGKTSIASAIAGTTKYA 66

Query: 82  FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +  V +K       + A     L    VL +DEIHRL    ++ L P +E+  + +
Sbjct: 67  FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLENGNI-I 121

Query: 137 MVG 139
           M+G
Sbjct: 122 MIG 124


>gi|260773038|ref|ZP_05881954.1| ATPase AAA family [Vibrio metschnikovii CIP 69.14]
 gi|260612177|gb|EEX37380.1| ATPase AAA family [Vibrio metschnikovii CIP 69.14]
          Length = 449

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 65/147 (44%), Gaps = 9/147 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+T+E++ GQ       K    A +A    L  ++  GPPG GKTTLA+V A      
Sbjct: 21  MRPQTIEQYIGQQHILGQDKPLRRALQA--GHLHSMILWGPPGTGKTTLAEVAANYANAE 78

Query: 82  FRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
               S        I  A D A     +  R +LF+DE+HR +   ++   P +ED  +  
Sbjct: 79  VERVSAVTSGVKEIRAAIDRARENQRVGRRTILFVDEVHRFNKSQQDAFLPYIEDGTVTF 138

Query: 137 M--VGEGPSARSVKINLSRFTLIAATT 161
           +    E PS       LSR  +   T+
Sbjct: 139 IGATTENPSFELNNALLSRARVYKLTS 165


>gi|319746115|gb|EFV98389.1| AAA family ATPase [Streptococcus agalactiae ATCC 13813]
          Length = 422

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR + E  GQ     N K+      A    L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPRNINEVIGQQHLVGNGKIIDRMVAA--NMLSSMILYGPPGIGKTSIASAIAGTTKYA 66

Query: 82  FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +  V +K       + A     L    VL +DEIHRL    ++ L P +E+  + +
Sbjct: 67  FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLENGNI-I 121

Query: 137 MVG 139
           M+G
Sbjct: 122 MIG 124


>gi|300871012|ref|YP_003785884.1| Holliday junction resolvase-like ATPase [Brachyspira pilosicoli
           95/1000]
 gi|300688712|gb|ADK31383.1| helicase subunit of the Holliday junction resolvase-like ATPase
           [Brachyspira pilosicoli 95/1000]
          Length = 433

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 63/115 (54%), Gaps = 7/115 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE---- 77
           +RP ++EE  GQ    S  K   +      + +  ++F GPPG+GK+T+A ++A++    
Sbjct: 18  MRPTSIEEVYGQKHILSENKTLRKMIDK--DKITSMVFFGPPGVGKSTVASIIAKKTKRE 75

Query: 78  -LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            + +N   ++   I +A   A    + E + +LFIDEIHR +   ++ L PA+E+
Sbjct: 76  YVKLNAVLSNVSEIREAIKKAEKNLSNEKKTILFIDEIHRFNKSQQDALLPAVEN 130


>gi|329767245|ref|ZP_08258772.1| hypothetical protein HMPREF0428_00469 [Gemella haemolysans M341]
 gi|328836912|gb|EGF86559.1| hypothetical protein HMPREF0428_00469 [Gemella haemolysans M341]
          Length = 415

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 62/114 (54%), Gaps = 5/114 (4%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           I+ LRP  + +  GQ     + KV  +  +++ +    +L+ GPPG GKT++A  +A EL
Sbjct: 5   INKLRPNKISDIIGQHHLIGDGKVLTKIVESK-KMFSFILY-GPPGTGKTSIANALANEL 62

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAME 130
              F+  +  V     DL A++   +   + +L +DE HRL+  +++IL P +E
Sbjct: 63  DYKFKILNA-VNCTKKDLTAVIEESKRFKKVILLLDEFHRLTKPMQDILLPEIE 115


>gi|269216091|ref|ZP_06159945.1| replication-associated recombination protein A [Slackia exigua ATCC
           700122]
 gi|269130350|gb|EEZ61428.1| replication-associated recombination protein A [Slackia exigua ATCC
           700122]
          Length = 443

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 97/208 (46%), Gaps = 23/208 (11%)

Query: 22  LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75
           +RPR+L E  GQ +A    S L + I A     +AL  V+  GP G GKT++A+++A   
Sbjct: 23  MRPRSLSELRGQKDAVGPGSWLALAITA-----DALSSVILFGPAGTGKTSIARIIAETT 77

Query: 76  RELGVNFRSTSGPVIAKAGDLAAL---LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           R   V   +  G V     +++A    L +   + +LF+DEIHR S   ++ L  A+E+ 
Sbjct: 78  RSAFVEVSAIGGTVADLRREISAAERRLASAGTKTILFVDEIHRFSRSQQDALLHAVEN- 136

Query: 133 QLDLMVG---EGP--SARSVKINLSRFTLIAATTR---VGLLTNPLQDRFGIPIRLNFYE 184
           ++ ++VG   E P     S  I+ SR   + A +      +L   L D  G+  R  F +
Sbjct: 137 RVVILVGATTENPFFEVNSALISRSRIVELHALSDADIASILDAALADERGLRGRFAFAD 196

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIA 212
                 +   G    G   T E A ++A
Sbjct: 197 GAARAIVDLSGGDARGALTTLELASQLA 224


>gi|254523765|ref|ZP_05135820.1| ATPase [Stenotrophomonas sp. SKA14]
 gi|219721356|gb|EED39881.1| ATPase [Stenotrophomonas sp. SKA14]
          Length = 425

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 67/137 (48%), Gaps = 14/137 (10%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL+E  GQ   +   S L+  +E+ +  +     ++  GPPG GKTTLA ++A   
Sbjct: 1   MRPRTLDEMVGQKRLLAPDSALRRAVESGRVHS-----MILWGPPGCGKTTLALLLAEYS 55

Query: 79  GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
              FR+ S      P + +    AA       R VLF+DE+HR +   ++   P +E   
Sbjct: 56  DAEFRAISAVLSGLPEVRQVLAEAAQRFAEGRRTVLFVDEVHRFNKAQQDAFLPHIERGT 115

Query: 134 LDLMVGEGPSARSVKIN 150
           + L VG      S ++N
Sbjct: 116 I-LFVGATTENPSFELN 131


>gi|167972549|ref|ZP_02554826.1| ATPase, AAA family [Ureaplasma urealyticum serovar 5 str. ATCC
           27817]
 gi|167988394|ref|ZP_02570065.1| ATPase, AAA family [Ureaplasma urealyticum serovar 7 str. ATCC
           27819]
 gi|195867731|ref|ZP_03079732.1| ATPase, AAA family [Ureaplasma urealyticum serovar 9 str. ATCC
           33175]
 gi|225551136|ref|ZP_03772082.1| ATPase, AAA family [Ureaplasma urealyticum serovar 8 str. ATCC
           27618]
 gi|184209307|gb|EDU06350.1| ATPase, AAA family [Ureaplasma urealyticum serovar 5 str. ATCC
           27817]
 gi|188018837|gb|EDU56877.1| ATPase, AAA family [Ureaplasma urealyticum serovar 7 str. ATCC
           27819]
 gi|195660586|gb|EDX53842.1| ATPase, AAA family [Ureaplasma urealyticum serovar 9 str. ATCC
           33175]
 gi|225378951|gb|EEH01316.1| ATPase, AAA family [Ureaplasma urealyticum serovar 8 str. ATCC
           27618]
          Length = 408

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 67/120 (55%), Gaps = 5/120 (4%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +L  P ++++  GQ +    + +  +        + +++F GPPG+GK++LA+V+A++L 
Sbjct: 8   TLKNPHSIDDIVGQKDLLDEIGIIRKMV--NHHQVFNLIFYGPPGVGKSSLAKVLAQDLK 65

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           V F +   PV+     L  ++    D +  ++ IDEIHRL+   ++IL P +E  ++ L 
Sbjct: 66  VPF-AFFNPVVDSKKQLMQIIEQALDLNNFIIIIDEIHRLNKDKQDILLPIIEANKIKLF 124


>gi|88860147|ref|ZP_01134786.1| putative polynucleotide enzyme with nucleotide triphosphate
           hydrolase domain [Pseudoalteromonas tunicata D2]
 gi|88818141|gb|EAR27957.1| putative polynucleotide enzyme with nucleotide triphosphate
           hydrolase domain [Pseudoalteromonas tunicata D2]
          Length = 446

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 103/242 (42%), Gaps = 35/242 (14%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  L E+ GQ    +  K   +A    +     ++  GPPG GKTTLAQ++A      
Sbjct: 19  MRPNVLAEYCGQQHLLAQDKPLYQAI--LSGHCHSMILWGPPGTGKTTLAQLIAHHATAQ 76

Query: 82  FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F   S  V A   ++   +   ++      R +LF+DE+HR +   ++   P +ED    
Sbjct: 77  FIQLSA-VTAGVKEIRESVQQAKNSLQHGQRTLLFVDEVHRFNKSQQDAFLPHIEDGTF- 134

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           L VG      S  +N      I + TRV +L +   D              DL  ++ R 
Sbjct: 135 LFVGATTENPSFALN----NAILSRTRVYVLKSLTDD--------------DLLQVINRA 176

Query: 196 ----AKLTGLAVT--DEAACEIAMRSRGTPRIAGRLLRRVRDFAE-VAHAKTITREIADA 248
                 L+ L ++  ++A   +   ++G  R A  LL +  D A+ +A  K I  ++ + 
Sbjct: 177 LIQDPILSTLQISMDEKAKGALCAAAQGDARKALNLLEQSVDLAQSIAGKKVIDSQVLEH 236

Query: 249 AL 250
            L
Sbjct: 237 VL 238


>gi|332678703|gb|AEE87832.1| ATPase, AAA family [Francisella cf. novicida Fx1]
          Length = 412

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 77/149 (51%), Gaps = 15/149 (10%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP++++E  GQ    S   +  +      + +  ++  G PG+GKT+LA+++A    + 
Sbjct: 10  IRPQSIDEIVGQEHLLSQHGILTKILAG--DGICSLVLCGKPGVGKTSLARIIASSKKLE 67

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137
           F   S  V +   D+  L+T+ +  D  VLF+DEIHR +   +++L P +E  ++ L+  
Sbjct: 68  FFELSA-VDSGVKDIKKLITDNQHLDSFVLFLDEIHRFNKSQQDLLLPYVESGKIILIGA 126

Query: 138 VGEGPS--------ARSVKINLSRFTLIA 158
             E P+        +R   + L R +L+A
Sbjct: 127 TTENPTYYLNDALVSRLFILRLKRLSLVA 155


>gi|281490561|ref|YP_003352541.1| chromosome segregation helicase [Lactococcus lactis subsp. lactis
           KF147]
 gi|281374379|gb|ADA63912.1| Chromosome segregation helicase, ATPase, AAA family [Lactococcus
           lactis subsp. lactis KF147]
          Length = 419

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 60/124 (48%), Gaps = 17/124 (13%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR ++E  GQ       K+     +   + L  ++  GPPG+GKT++A  +A  + V 
Sbjct: 9   MRPRNIDEIVGQKHLVGKGKIIRRMVET--QLLSSMILYGPPGIGKTSIASAIAGTMNVA 66

Query: 82  FRSTSGPV--------IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           FR+ +           IA   + +  L       VL +DEIHRL    ++ L P +E+ Q
Sbjct: 67  FRTFNATTDTKKRLQEIASEAEFSGQL-------VLLLDEIHRLDKPKQDFLLPLLENGQ 119

Query: 134 LDLM 137
           + L+
Sbjct: 120 IILI 123


>gi|229135222|ref|ZP_04264021.1| hypothetical protein bcere0014_41240 [Bacillus cereus BDRD-ST196]
 gi|229169142|ref|ZP_04296857.1| hypothetical protein bcere0007_40940 [Bacillus cereus AH621]
 gi|228614370|gb|EEK71480.1| hypothetical protein bcere0007_40940 [Bacillus cereus AH621]
 gi|228648264|gb|EEL04300.1| hypothetical protein bcere0014_41240 [Bacillus cereus BDRD-ST196]
          Length = 428

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 86/330 (26%), Positives = 130/330 (39%), Gaps = 65/330 (19%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  ++E  GQ       K+     +A       ++  GPPG GKT++A  +A   G  
Sbjct: 9   MRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAIAGSTGTL 66

Query: 82  FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
           FR  +  V     D+  ++    +    VL +DE+HRL    ++ L P +E   L     
Sbjct: 67  FRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLL----- 120

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEI----ED-----LK 189
                          TLI ATT     +NP       I  R   +E+    ED     LK
Sbjct: 121 ---------------TLIGATT-----SNPFHAINSAIRSRCQIFELHALTEDDILIGLK 160

Query: 190 TIVQRGAKLTG---LAVTDEAACEIAMRSRGTPRIAGRLLRR--VRDFAEVAHAKTITRE 244
             ++   K  G   + VTDEA    A  S G  R A   L    +  F     A  IT E
Sbjct: 161 RALEDKEKGLGEYDVTVTDEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAVEITLE 220

Query: 245 IADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           IA+  L + +   DK G    D+  L+   ++  G  V              A+  L   
Sbjct: 221 IAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDVNA------------ALHYLAR- 265

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
            +I+ G +Q    GR L+ +A++ +G+  P
Sbjct: 266 -LIEAGDLQSI--GRRLLIMAYEDIGLASP 292


>gi|209554055|ref|YP_002284591.1| recombination factor protein RarA [Ureaplasma urealyticum serovar
           10 str. ATCC 33699]
 gi|225550599|ref|ZP_03771548.1| ATPase, AAA family [Ureaplasma urealyticum serovar 2 str. ATCC
           27814]
 gi|209541556|gb|ACI59785.1| ATPase, AAA family [Ureaplasma urealyticum serovar 10 str. ATCC
           33699]
 gi|225379753|gb|EEH02115.1| ATPase, AAA family [Ureaplasma urealyticum serovar 2 str. ATCC
           27814]
          Length = 408

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 67/120 (55%), Gaps = 5/120 (4%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +L  P ++++  GQ +    + +  +        + +++F GPPG+GK++LA+V+A++L 
Sbjct: 8   TLKNPHSIDDIVGQKDLLDEIGIIRKMV--NHHQVFNLIFYGPPGVGKSSLAKVLAQDLK 65

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           V F +   PV+     L  ++    D +  ++ IDEIHRL+   ++IL P +E  ++ L 
Sbjct: 66  VPF-AFFNPVVDSKKQLMQIIEQALDLNNFIIIIDEIHRLNKDKQDILLPIIEANKIKLF 124


>gi|227549178|ref|ZP_03979227.1| crossover junction endodeoxyribonuclease ATPase [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227078738|gb|EEI16701.1| crossover junction endodeoxyribonuclease ATPase [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 449

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/136 (33%), Positives = 68/136 (50%), Gaps = 23/136 (16%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP++L +  GQ         L+  +E + A +     V+  GPPG GKTT+A ++A  +
Sbjct: 35  MRPQSLSDVVGQDHVLGEGKPLRRLVEGSGAAS-----VILYGPPGTGKTTIASLIASTM 89

Query: 79  GVNFRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           G NF   S           VIA+A      LT  E + VLFIDE+HR S   ++ L  A+
Sbjct: 90  GQNFVGLSALSSGVKDVREVIAQA---RRDLTRGE-KTVLFIDEVHRFSKTQQDALLAAV 145

Query: 130 EDFQLDLMVG--EGPS 143
           E+  + L+    E PS
Sbjct: 146 ENRTVLLVAATTENPS 161


>gi|114605198|ref|XP_518204.2| PREDICTED: Werner helicase interacting protein isoform 4 [Pan
           troglodytes]
          Length = 576

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 75/151 (49%), Gaps = 21/151 (13%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75
           +RP TL+++ GQ +A      L+  +E  +     +  ++  GPPG GKTTLA ++A   
Sbjct: 231 MRPDTLQDYFGQSKAVGQDTLLRSLLETNE-----IPSLILWGPPGCGKTTLAHIIASNS 285

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPA 128
           ++  + F + S    AK  D+  ++   ++       + +LFIDEIHR +   ++   P 
Sbjct: 286 KKHSIRFVTLSA-TNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPH 344

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLI 157
           +E   + L+    E PS +     LSR  +I
Sbjct: 345 VECGTITLIGATTENPSFQVNAALLSRCRVI 375


>gi|59801120|ref|YP_207832.1| recombination factor protein RarA [Neisseria gonorrhoeae FA 1090]
 gi|194098765|ref|YP_002001827.1| recombination factor protein RarA [Neisseria gonorrhoeae NCCP11945]
 gi|239999059|ref|ZP_04718983.1| recombination factor protein RarA [Neisseria gonorrhoeae 35/02]
 gi|240014030|ref|ZP_04720943.1| recombination factor protein RarA [Neisseria gonorrhoeae DGI18]
 gi|240016470|ref|ZP_04723010.1| recombination factor protein RarA [Neisseria gonorrhoeae FA6140]
 gi|240080592|ref|ZP_04725135.1| recombination factor protein RarA [Neisseria gonorrhoeae FA19]
 gi|240113038|ref|ZP_04727528.1| recombination factor protein RarA [Neisseria gonorrhoeae MS11]
 gi|240115795|ref|ZP_04729857.1| recombination factor protein RarA [Neisseria gonorrhoeae PID18]
 gi|240118091|ref|ZP_04732153.1| recombination factor protein RarA [Neisseria gonorrhoeae PID1]
 gi|240121596|ref|ZP_04734558.1| recombination factor protein RarA [Neisseria gonorrhoeae PID24-1]
 gi|240123645|ref|ZP_04736601.1| recombination factor protein RarA [Neisseria gonorrhoeae PID332]
 gi|240125829|ref|ZP_04738715.1| recombination factor protein RarA [Neisseria gonorrhoeae SK-92-679]
 gi|240128343|ref|ZP_04741004.1| recombination factor protein RarA [Neisseria gonorrhoeae
           SK-93-1035]
 gi|254493843|ref|ZP_05107014.1| recombination factor protein RarA [Neisseria gonorrhoeae 1291]
 gi|260440387|ref|ZP_05794203.1| recombination factor protein RarA [Neisseria gonorrhoeae DGI2]
 gi|268594903|ref|ZP_06129070.1| recombination factor protein RarA [Neisseria gonorrhoeae 35/02]
 gi|268596717|ref|ZP_06130884.1| recombination factor protein RarA [Neisseria gonorrhoeae FA19]
 gi|268599122|ref|ZP_06133289.1| recombination factor protein RarA [Neisseria gonorrhoeae MS11]
 gi|268601473|ref|ZP_06135640.1| recombination factor protein RarA [Neisseria gonorrhoeae PID18]
 gi|268603806|ref|ZP_06137973.1| recombination factor protein RarA [Neisseria gonorrhoeae PID1]
 gi|268682274|ref|ZP_06149136.1| recombination factor protein RarA [Neisseria gonorrhoeae PID332]
 gi|268684428|ref|ZP_06151290.1| recombination factor protein RarA [Neisseria gonorrhoeae SK-92-679]
 gi|268686740|ref|ZP_06153602.1| recombination factor protein RarA [Neisseria gonorrhoeae
           SK-93-1035]
 gi|291043684|ref|ZP_06569400.1| recombination factor protein RarA [Neisseria gonorrhoeae DGI2]
 gi|293398982|ref|ZP_06643147.1| ATPase [Neisseria gonorrhoeae F62]
 gi|59718015|gb|AAW89420.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
 gi|193934055|gb|ACF29879.1| Conserved hypothetical protein [Neisseria gonorrhoeae NCCP11945]
 gi|226512883|gb|EEH62228.1| recombination factor protein RarA [Neisseria gonorrhoeae 1291]
 gi|268548292|gb|EEZ43710.1| recombination factor protein RarA [Neisseria gonorrhoeae 35/02]
 gi|268550505|gb|EEZ45524.1| recombination factor protein RarA [Neisseria gonorrhoeae FA19]
 gi|268583253|gb|EEZ47929.1| recombination factor protein RarA [Neisseria gonorrhoeae MS11]
 gi|268585604|gb|EEZ50280.1| recombination factor protein RarA [Neisseria gonorrhoeae PID18]
 gi|268587937|gb|EEZ52613.1| recombination factor protein RarA [Neisseria gonorrhoeae PID1]
 gi|268622558|gb|EEZ54958.1| recombination factor protein RarA [Neisseria gonorrhoeae PID332]
 gi|268624712|gb|EEZ57112.1| recombination factor protein RarA [Neisseria gonorrhoeae SK-92-679]
 gi|268627024|gb|EEZ59424.1| recombination factor protein RarA [Neisseria gonorrhoeae
           SK-93-1035]
 gi|291012147|gb|EFE04136.1| recombination factor protein RarA [Neisseria gonorrhoeae DGI2]
 gi|291610396|gb|EFF39506.1| ATPase [Neisseria gonorrhoeae F62]
 gi|317164351|gb|ADV07892.1| recombination factor protein RarA [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 436

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 66/143 (46%), Gaps = 17/143 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP TL++  GQ   +     L+V +E  K  +     +L  GPPG+GKTTLA+++A+  
Sbjct: 17  LRPHTLDDVIGQQHLIGEGKPLRVAVEGGKPHS-----MLLWGPPGVGKTTLARILAQSF 71

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
              F   S  V +   D+   +   E         +LF+DE+HR +   ++   P +E  
Sbjct: 72  NAQFLPVSA-VFSGVKDIRGAIDKAEIALQQGRATILFVDEVHRFNKAQQDAFLPHVESG 130

Query: 133 QLDLM--VGEGPSARSVKINLSR 153
            L  +    E PS       LSR
Sbjct: 131 LLTFIGATTENPSFEVNPALLSR 153


>gi|300811355|ref|ZP_07091852.1| recombination factor protein RarA [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300497719|gb|EFK32744.1| recombination factor protein RarA [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 430

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 63/126 (50%), Gaps = 18/126 (14%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+++++  GQ       K+     +AR   L  ++  GPPG+GKT++A  +A      
Sbjct: 8   MRPQSIDQVVGQQHLVGPKKIIRRMVEARQ--LSSMILYGPPGIGKTSIASAIAGSSKYA 65

Query: 82  FRSTSGPV--------IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           FR  +           +A  G ++  +       VL +DEIHRL+ + ++ L P +E  Q
Sbjct: 66  FRQLNAATDGQKELSQVAAEGKMSGTV-------VLLLDEIHRLNKVKQDFLLPLLESGQ 118

Query: 134 LDLMVG 139
           + +M+G
Sbjct: 119 V-IMIG 123


>gi|193787734|dbj|BAG52937.1| unnamed protein product [Homo sapiens]
          Length = 614

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 75/151 (49%), Gaps = 21/151 (13%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75
           +RP TL+++ GQ +A      L+  +E  +     +  ++  GPPG GKTTLA ++A   
Sbjct: 231 MRPDTLQDYFGQSKAVGQDTLLRSLLETNE-----IPSLILWGPPGCGKTTLAHIIASNS 285

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPA 128
           ++  + F + S    AK  D+  ++   ++       + +LFIDEIHR +   ++   P 
Sbjct: 286 KKHSIRFVTLSA-TNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPH 344

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLI 157
           +E   + L+    E PS +     LSR  +I
Sbjct: 345 VECGTITLIGATTENPSFQVNAALLSRCRVI 375


>gi|189501780|ref|YP_001957497.1| hypothetical protein Aasi_0336 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497221|gb|ACE05768.1| hypothetical protein Aasi_0336 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 431

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 76/153 (49%), Gaps = 18/153 (11%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           L S+N  +  A  S LRP++L E  GQ    E    L V  ++ +     L  ++  GPP
Sbjct: 4   LFSQNSYEPLA--SRLRPQSLNEIVGQEHLTEGKGPLGVMRKSGQ-----LSSLILWGPP 56

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRD------VLFIDEIHRL 117
           G GKTTLA+++A+   + F   S  + +   DL  +    ++R       +LF+DEIHR 
Sbjct: 57  GCGKTTLARLLAKTSDLEFEPISA-IESGVADLKKVFERAQERKKMGRGTLLFVDEIHRF 115

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN 150
           +   ++   P +E+  + +++G      S ++N
Sbjct: 116 NRTQQDSFLPHVENGTV-ILIGATTENPSFELN 147


>gi|313668375|ref|YP_004048659.1| AAA ATPase [Neisseria lactamica ST-640]
 gi|313005837|emb|CBN87292.1| putative AAA ATPase [Neisseria lactamica 020-06]
          Length = 436

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 15/118 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP TL++  GQ   +     L+V +E  K  +     +L  GPPG+GKTTLA+++A+  
Sbjct: 17  LRPHTLDDVVGQEHLIGEGKPLRVAVEGGKPHS-----MLLWGPPGVGKTTLARILAQSF 71

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAME 130
              F   S  V +   D+   +   E         +LF+DE+HR +   ++   P +E
Sbjct: 72  NAQFLPVSA-VFSGVKDIRGAIDKAEIALQQGRATILFVDEVHRFNKAQQDAFLPYVE 128


>gi|227552635|ref|ZP_03982684.1| crossover junction endodeoxyribonuclease [Enterococcus faecium
           TX1330]
 gi|227178261|gb|EEI59233.1| crossover junction endodeoxyribonuclease [Enterococcus faecium
           TX1330]
          Length = 459

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 4/130 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRT++E  GQ       K+      AR   L  ++  GPPG GKT++A  +A      
Sbjct: 40  MRPRTIDEVVGQQHLVGEGKIIRRMVDARM--LSSMILYGPPGTGKTSIASAIAGSTNYA 97

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR  +    +K    + A    +    +L +DE+HRL    ++ L P +E  ++ +++G 
Sbjct: 98  FRMLNAATDSKKELQVVAEEAKMSGTVILLLDEVHRLDKTKQDFLLPHLESGRI-ILIGA 156

Query: 141 GPSARSVKIN 150
                 + IN
Sbjct: 157 TTENPYITIN 166


>gi|170698492|ref|ZP_02889563.1| AAA ATPase central domain protein [Burkholderia ambifaria IOP40-10]
 gi|170136576|gb|EDT04833.1| AAA ATPase central domain protein [Burkholderia ambifaria IOP40-10]
          Length = 436

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 111/257 (43%), Gaps = 38/257 (14%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL E  GQ         L++  E+ K  +     ++  GPPG+GKTTLA++ A   
Sbjct: 17  LRPKTLAEVIGQTHLLGEGKPLRLAFESGKPHS-----MILWGPPGVGKTTLARLTALAF 71

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V+    D+   +   +D         +LF+DEIHR +   ++ L P +E 
Sbjct: 72  DCEFIALSA-VLGGVKDIRESMEQAKDTLNRTGRHTILFVDEIHRFNKGQQDALLPFVES 130

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
             L   +G      S ++N    + + +  +V +L +           LN  E+  L   
Sbjct: 131 -GLVTFIGATTENPSFEVN----SALLSRAQVYVLQS-----------LNDDEMRQLLKR 174

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
            Q  A L GLA  D+A   +   + G  R    LL + +  A  +   TI  E   +A+ 
Sbjct: 175 AQEIA-LDGLAFDDKAVDTLIGYADGDARRFLNLLEQAQTAASSSRITTIDAEFVSSAMT 233

Query: 252 RLA--IDKMG---FDQL 263
             A   DK G   +DQ+
Sbjct: 234 LNARRFDKGGDNFYDQI 250


>gi|146311073|ref|YP_001176147.1| recombination factor protein RarA [Enterobacter sp. 638]
 gi|145317949|gb|ABP60096.1| Recombination protein MgsA [Enterobacter sp. 638]
          Length = 447

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 58/115 (50%), Gaps = 7/115 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  L ++ GQ    +  K    A +A    L  ++  GPPG GKTTLA+V+AR    +
Sbjct: 20  MRPENLAQYIGQQHLLAPGKPLPRAIEA--GHLHSMILWGPPGTGKTTLAEVIARYADAD 77

Query: 82  FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
                  TSG   I +A + A    N   R +LF+DE+HR +   ++   P +ED
Sbjct: 78  VERLSAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED 132


>gi|62089026|dbj|BAD92960.1| Werner helicase interacting protein isoform 1 variant [Homo
           sapiens]
          Length = 646

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 75/151 (49%), Gaps = 21/151 (13%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75
           +RP TL+++ GQ +A      L+  +E  +     +  ++  GPPG GKTTLA ++A   
Sbjct: 212 MRPDTLQDYFGQSKAVGQDTLLRSLLETNE-----IPSLILWGPPGCGKTTLAHIIASNS 266

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPA 128
           ++  + F + S    AK  D+  ++   ++       + +LFIDEIHR +   ++   P 
Sbjct: 267 KKHSIRFVTLSA-TNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPH 325

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLI 157
           +E   + L+    E PS +     LSR  +I
Sbjct: 326 VECGTITLIGATTENPSFQVNAALLSRCRVI 356


>gi|15672079|ref|NP_266253.1| recombination factor protein RarA [Lactococcus lactis subsp. lactis
           Il1403]
 gi|12722942|gb|AAK04195.1|AE006248_3 chromosome segregation helicase [Lactococcus lactis subsp. lactis
           Il1403]
          Length = 419

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 60/124 (48%), Gaps = 17/124 (13%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR ++E  GQ       K+     +   + L  ++  GPPG+GKT++A  +A  + V 
Sbjct: 9   MRPRNIDEIVGQKHLVGKGKIIRRMVET--QLLSSMILYGPPGIGKTSIASAIAGTMNVA 66

Query: 82  FRSTSGPV--------IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           FR+ +           IA   + +  L       VL +DEIHRL    ++ L P +E+ Q
Sbjct: 67  FRTFNATTDTKKRLQEIASEAEFSGQL-------VLLLDEIHRLDKPKQDFLLPLLENGQ 119

Query: 134 LDLM 137
           + L+
Sbjct: 120 IILI 123


>gi|88798710|ref|ZP_01114293.1| hypothetical protein MED297_15939 [Reinekea sp. MED297]
 gi|88778473|gb|EAR09665.1| hypothetical protein MED297_15939 [Reinekea sp. MED297]
          Length = 439

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 75/160 (46%), Gaps = 14/160 (8%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           +LRP+TL ++ GQ       K   +  + R   L  ++F GPPG+GKTTLA V++  +  
Sbjct: 17  VLRPQTLTDYIGQQHILGPGKPLRQTLENRN--LHSMIFWGPPGVGKTTLANVISNTVEA 74

Query: 81  NFRSTSGPVIAKAGDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAMEDFQL 134
            F   S  V A   D+  +    +         VLF+DE+HR +   ++   P +E+   
Sbjct: 75  RFEVLSA-VQAGVKDIKLVAEKAKQAQAYGEVTVLFVDEVHRFNKAQQDAFLPYVENGTF 133

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRF 174
            + +G      S ++N    + + +  RV +L +   D F
Sbjct: 134 -IFIGATTENPSFELN----SALLSRARVYVLKSFTDDDF 168


>gi|298387659|ref|ZP_06997210.1| ATPase, AAA family [Bacteroides sp. 1_1_14]
 gi|298259515|gb|EFI02388.1| ATPase, AAA family [Bacteroides sp. 1_1_14]
          Length = 106

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 57/105 (54%), Gaps = 16/105 (15%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL+++ GQ   V   + L+  I+A +     +   +  GPPG+GKTTLAQ++A +L
Sbjct: 8   LRPKTLDDYIGQKHLVGPGAILRKMIDAGR-----ISSFILWGPPGVGKTTLAQIIANKL 62

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHR 116
              F + S  V +   D+  ++          +   +LFIDEIHR
Sbjct: 63  ETPFYTLSA-VTSGVKDVREVIERAKSNRFFSQSSPILFIDEIHR 106


>gi|226366324|ref|YP_002784107.1| recombination factor protein RarA [Rhodococcus opacus B4]
 gi|226244814|dbj|BAH55162.1| putative AAA family ATPase [Rhodococcus opacus B4]
          Length = 477

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/146 (34%), Positives = 73/146 (50%), Gaps = 23/146 (15%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL E  GQ   +   + L+  +E + A +     VL  GPPG GKTTLA +++   
Sbjct: 48  MRPRTLGEVVGQQHLLGPGAPLRRLVEGSGAAS-----VLLYGPPGTGKTTLASLISGAT 102

Query: 79  GVNFRSTSGPVIAKAG--------DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           G  F + S      AG        +LA       ++ VLFIDE+HR S   ++ L  A+E
Sbjct: 103 GRRFEALSA---LSAGVKEVRGVIELARRRLLAGEQTVLFIDEVHRFSKTQQDALLAAVE 159

Query: 131 DFQLDLMVG---EGPSARSVKINLSR 153
           + ++ L+V    E PS   V   LSR
Sbjct: 160 N-RIVLLVAATTENPSFSVVSPLLSR 184


>gi|315503209|ref|YP_004082096.1| aaa atpase central domain protein [Micromonospora sp. L5]
 gi|315409828|gb|ADU07945.1| AAA ATPase central domain protein [Micromonospora sp. L5]
          Length = 496

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 71/148 (47%), Gaps = 18/148 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP  ++E  GQ   +   + L+  +E A   +     V+  GPPG GKTT+A +VAR  
Sbjct: 38  MRPAGIDELVGQEHLLAPGAPLRQLVEGAAPMS-----VILWGPPGSGKTTIAHLVARAT 92

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131
              F + S  + A   D+ A++     +        VLFIDE+HR S   ++ L  A+ED
Sbjct: 93  DRRFVAMSA-LTAGVKDVRAVIETARRQRRSGGPPTVLFIDEVHRFSKTQQDSLLAAVED 151

Query: 132 FQLDLMVG--EGPSARSVKINLSRFTLI 157
             + L+    E P    +   LSR  L+
Sbjct: 152 RTVTLLAATTENPYFSVISPLLSRCVLL 179


>gi|205374224|ref|ZP_03227023.1| recombination factor protein RarA [Bacillus coahuilensis m4-4]
          Length = 177

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 59/117 (50%), Gaps = 3/117 (2%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+T+++  GQ       K+     +A+   L  ++  GPPG+GKT++A  +A      
Sbjct: 10  MRPKTIDDIIGQQHLVGEGKIIRRMVEAKQ--LSSMILYGPPGIGKTSIASAIAGSTKYA 67

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           FR  +     K   ++ A    +  + VL +DE+HRL    ++ L P +E+  + L+
Sbjct: 68  FRMLNAVTSNKKDMEIVAAEAKMSGKVVLLLDEVHRLDKGKQDFLLPHLENGSITLI 124


>gi|114605200|ref|XP_001159547.1| PREDICTED: ATPase WRNIP1 isoform 2 [Pan troglodytes]
          Length = 614

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 75/151 (49%), Gaps = 21/151 (13%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75
           +RP TL+++ GQ +A      L+  +E  +     +  ++  GPPG GKTTLA ++A   
Sbjct: 231 MRPDTLQDYFGQSKAVGQDTLLRSLLETNE-----IPSLILWGPPGCGKTTLAHIIASNS 285

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPA 128
           ++  + F + S    AK  D+  ++   ++       + +LFIDEIHR +   ++   P 
Sbjct: 286 KKHSIRFVTLSA-TNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPH 344

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLI 157
           +E   + L+    E PS +     LSR  +I
Sbjct: 345 VECGTITLIGATTENPSFQVNAALLSRCRVI 375


>gi|22538114|ref|NP_688965.1| recombination factor protein RarA [Streptococcus agalactiae
           2603V/R]
 gi|76799348|ref|ZP_00781508.1| ATPase, AAA family [Streptococcus agalactiae 18RS21]
 gi|22535021|gb|AAN00838.1|AE014281_7 ATPase, AAA family [Streptococcus agalactiae 2603V/R]
 gi|76585295|gb|EAO61893.1| ATPase, AAA family [Streptococcus agalactiae 18RS21]
          Length = 422

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR + E  GQ     N K+      A    L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPRNINEVIGQQHLVGNGKIIDRMVAA--NMLSSMILYGPPGIGKTSIASAIAGTTKYA 66

Query: 82  FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +  V +K       + A     L    VL +DEIHRL    ++ L P +E+  + +
Sbjct: 67  FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLENGNI-I 121

Query: 137 MVG 139
           M+G
Sbjct: 122 MIG 124


>gi|290473946|ref|YP_003466820.1| putative polynucleotide enzyme with nucleotide triphosphate
           hydrolase domain [Xenorhabdus bovienii SS-2004]
 gi|289173253|emb|CBJ80028.1| putative polynucleotide enzyme with nucleotide triphosphate
           hydrolase domain [Xenorhabdus bovienii SS-2004]
          Length = 447

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 63/129 (48%), Gaps = 9/129 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP TL+ + GQ    +  K    A   RA  L  ++  GPPG GKTTLA+++      +
Sbjct: 20  MRPVTLDHYIGQQHLLAEGKPLPRAI--RAGHLHSMILWGPPGTGKTTLAEIIGHYAQAD 77

Query: 82  FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
                  TSG   I ++ + A+   N   R +LF+DE+HR +   ++   P +ED  +  
Sbjct: 78  IERISAVTSGIKEIRESIEKASQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 137

Query: 137 M--VGEGPS 143
           +    E PS
Sbjct: 138 IGATTENPS 146


>gi|111024084|ref|YP_707056.1| recombination factor protein RarA [Rhodococcus jostii RHA1]
 gi|110823614|gb|ABG98898.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [Rhodococcus jostii RHA1]
          Length = 478

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/146 (34%), Positives = 73/146 (50%), Gaps = 23/146 (15%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL E  GQ   +   + L+  +E + A +     VL  GPPG GKTTLA +++   
Sbjct: 49  MRPRTLGEVVGQQHLLGPGAPLRRLVEGSGAAS-----VLLYGPPGTGKTTLASLISGAT 103

Query: 79  GVNFRSTSGPVIAKAG--------DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           G  F + S      AG        +LA       ++ VLFIDE+HR S   ++ L  A+E
Sbjct: 104 GRRFEALSA---LSAGVKEVRGVIELARRRLLAGEQTVLFIDEVHRFSKTQQDALLAAVE 160

Query: 131 DFQLDLMVG---EGPSARSVKINLSR 153
           + ++ L+V    E PS   V   LSR
Sbjct: 161 N-RIVLLVAATTENPSFSVVSPLLSR 185


>gi|302866794|ref|YP_003835431.1| AAA ATPase central domain-containing protein [Micromonospora
           aurantiaca ATCC 27029]
 gi|302569653|gb|ADL45855.1| AAA ATPase central domain protein [Micromonospora aurantiaca ATCC
           27029]
          Length = 532

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 71/148 (47%), Gaps = 18/148 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP  ++E  GQ   +   + L+  +E A   +     V+  GPPG GKTT+A +VAR  
Sbjct: 74  MRPAGIDELVGQEHLLAPGAPLRQLVEGAAPMS-----VILWGPPGSGKTTIAHLVARAT 128

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131
              F + S  + A   D+ A++     +        VLFIDE+HR S   ++ L  A+ED
Sbjct: 129 DRRFVAMSA-LTAGVKDVRAVIETARRQRRSGGPPTVLFIDEVHRFSKTQQDSLLAAVED 187

Query: 132 FQLDLMVG--EGPSARSVKINLSRFTLI 157
             + L+    E P    +   LSR  L+
Sbjct: 188 RTVTLLAATTENPYFSVISPLLSRCVLL 215


>gi|260468527|ref|ZP_05813694.1| AAA ATPase central domain protein [Mesorhizobium opportunistum
           WSM2075]
 gi|259028683|gb|EEW29992.1| AAA ATPase central domain protein [Mesorhizobium opportunistum
           WSM2075]
          Length = 435

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 68/138 (49%), Gaps = 16/138 (11%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKAR---AEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+ L E  GQ           + A  R   + +L  ++F GPPG GKTT+A+++A E 
Sbjct: 23  LRPKNLGEVVGQEHLTGP-----DGALTRLIGSGSLGSMIFWGPPGTGKTTVARLLAGET 77

Query: 79  GVNFRSTSGPVIAKAGDL-----AALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMEDF 132
            + F   S  V +   DL     AA L     R  +LF+DEIHR +   ++   P MED 
Sbjct: 78  SLAFEQISA-VFSGVADLKKVFEAAKLRRANGRQTLLFVDEIHRFNRAQQDSFLPVMEDG 136

Query: 133 QLDLMVGEGPSARSVKIN 150
            + ++VG      S ++N
Sbjct: 137 TV-VLVGATTENPSFELN 153


>gi|241760045|ref|ZP_04758143.1| recombination factor protein RarA [Neisseria flavescens SK114]
 gi|241319499|gb|EER55929.1| recombination factor protein RarA [Neisseria flavescens SK114]
          Length = 435

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 71/151 (47%), Gaps = 16/151 (10%)

Query: 14  QEDADIS-LLRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           Q DA ++  LRP +L++  GQ   +     L+V +E  K  +     +L  GPPG+GKTT
Sbjct: 8   QPDAPLAERLRPHSLDDVIGQQHLIGEGKPLRVAVEGGKPHS-----MLLWGPPGVGKTT 62

Query: 70  LAQVVARELGVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LA+++A+     F   S        I +A D A +        +LF+DE+HR +   ++ 
Sbjct: 63  LARILAQSFNAQFLPVSAVFSGVKDIREAIDKAEIALQQGRTTILFVDEVHRFNKAQQDA 122

Query: 125 LYPAMEDFQLDLM--VGEGPSARSVKINLSR 153
             P +E   L  +    E PS       LSR
Sbjct: 123 FLPHVESGLLTFIGATTENPSFEVNPALLSR 153


>gi|269792161|ref|YP_003317065.1| AAA ATPase central domain-containing protein [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269099796|gb|ACZ18783.1| AAA ATPase central domain protein [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 421

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/196 (29%), Positives = 91/196 (46%), Gaps = 34/196 (17%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPR+L+E+ GQ         L++ I +   R+      +  GPPG+GKTTL +++A   
Sbjct: 15  MRPRSLDEYVGQEHLLGEGGPLRLLISSNSLRS-----CILYGPPGVGKTTLVRLMATTT 69

Query: 79  GVNFRSTSGPVIAKAGDLAAL------LTNLE-DRDVLFIDEIHRLSIIVEEILYPAMED 131
           G      +  V +K  DL AL      LT++  +  + F+DEI+  +   + +L P +E 
Sbjct: 70  GRELLEINA-VTSKLSDLRALADRAASLTSMGFEPPIAFVDEIYHFNSQQQNVLLPFVES 128

Query: 132 FQLDLMVG---EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
            Q+ ++VG   E P     K  LSR  +            PL+DR  I + +   E  D 
Sbjct: 129 GQM-VLVGTTTENPWFEVNKTLLSRMLVYE--------LKPLEDRHVIQVLVRALEDFD- 178

Query: 189 KTIVQRGAKLTGLAVT 204
                RG    GL+VT
Sbjct: 179 -----RGLGRLGLSVT 189


>gi|167586457|ref|ZP_02378845.1| recombination factor protein RarA [Burkholderia ubonensis Bu]
          Length = 436

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 113/259 (43%), Gaps = 42/259 (16%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL E  GQ         L++  E+ K  +     ++  GPPG+GKTTLA++ A   
Sbjct: 17  LRPKTLAEVIGQTHLLGEGKPLRLAFESGKPHS-----MILWGPPGVGKTTLARLTALAF 71

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V+    D+   +   +D         +LF+DEIHR +   ++ L P +E 
Sbjct: 72  DCEFIALSA-VLGGVKDIREAMEQAKDTLNRTGRHTILFVDEIHRFNKGQQDALLPFVES 130

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
             L   +G      S ++N    + + +  +V +L +   D              +++ +
Sbjct: 131 -GLVTFIGATTENPSFEVN----SALLSRAQVYVLKSLTDD--------------EMRQL 171

Query: 192 VQRGAK--LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
           ++R  +  L GLA  D+A   +   + G  R    LL + +  A  A   TI  +   +A
Sbjct: 172 LKRAQEIALEGLAFDDKAVDTLVGYADGDARRFLNLLEQAQTAATSAGVTTIDADFVSSA 231

Query: 250 LLRLA--IDKMG---FDQL 263
           +   A   DK G   +DQ+
Sbjct: 232 MTLNARRFDKGGDNFYDQI 250


>gi|62898918|dbj|BAD97313.1| Werner helicase interacting protein isoform 1 variant [Homo
           sapiens]
          Length = 665

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 75/151 (49%), Gaps = 21/151 (13%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75
           +RP TL+++ GQ +A      L+  +E  +     +  ++  GPPG GKTTLA ++A   
Sbjct: 231 MRPDTLQDYFGQSKAVGQDTLLRSLLETNE-----IPSLILWGPPGCGKTTLAHIIASNS 285

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPA 128
           ++  + F + S    AK  D+  ++   ++       + +LFIDEIHR +   ++   P 
Sbjct: 286 KKHSIRFVTLSA-TNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPH 344

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLI 157
           +E   + L+    E PS +     LSR  +I
Sbjct: 345 VECGTITLIGATTENPSFQVNAALLSRCRVI 375


>gi|119383540|ref|YP_914596.1| recombination factor protein RarA [Paracoccus denitrificans PD1222]
 gi|119373307|gb|ABL68900.1| Recombination protein MgsA [Paracoccus denitrificans PD1222]
          Length = 442

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 62/122 (50%), Gaps = 8/122 (6%)

Query: 51  AEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLED 105
           A +L  ++  GPPG+GKTT+A+++A+E  + F   S      P + K  D A L      
Sbjct: 53  AGSLSSLILWGPPGVGKTTIARLLAQETDLAFVQISAIFSGVPELRKVFDAARLRGQQGR 112

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRV 163
             +LF+DEIHR +   ++   P MED  + L+    E PS       LSR  +I    R+
Sbjct: 113 GTLLFVDEIHRFNKAQQDSFLPHMEDGTITLVGATTENPSFELNAALLSRAQVI-VLERL 171

Query: 164 GL 165
           GL
Sbjct: 172 GL 173


>gi|312384050|gb|EFR28872.1| hypothetical protein AND_02653 [Anopheles darlingi]
          Length = 580

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 20/151 (13%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP  +E++ GQ +       L+   ++      ++  ++  GPPG GKTTLA ++A   
Sbjct: 162 VRPDNIEDYVGQEQVMGRNAILRKLFDSG-----SIPSMILWGPPGCGKTTLAHIIANRC 216

Query: 79  GVNFRS--------TSGPV--IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
             N  S        TS  V  + +A  +A   +  + R +LF+DEIHR + + ++I  P 
Sbjct: 217 KQNSNSMRFVSLSATSAGVNDVKEAVKVAKNESRFKRRTILFLDEIHRFNKLQQDIFLPH 276

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLI 157
           +E   + L+    E PS       LSR  +I
Sbjct: 277 VESGTITLIGATTENPSFSLNSALLSRCRVI 307


>gi|239625342|ref|ZP_04668373.1| AAA ATPase central domain-containing protein [Clostridiales
           bacterium 1_7_47_FAA]
 gi|239519572|gb|EEQ59438.1| AAA ATPase central domain-containing protein [Clostridiales
           bacterium 1_7_47FAA]
          Length = 442

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 76/156 (48%), Gaps = 22/156 (14%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVF---IEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           S LRP  L+ F GQ       K+    IE  K     +  ++F GPPG+GKTTLA ++A 
Sbjct: 18  SRLRPDDLDGFVGQEHLLGKGKILRQLIEQDK-----IPSMIFWGPPGVGKTTLAGIIAH 72

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130
           +    F + S  V +   ++  ++   E+      + V+F+DEIHR +   ++   P +E
Sbjct: 73  KTHAEFINFSA-VTSGIKEIKEVMAQAENSRRMGIKTVVFVDEIHRFNKAQQDAFLPYVE 131

Query: 131 DFQLDLMVGEGPSARSVKIN---LSR---FTLIAAT 160
              + +++G      S +IN   LSR   F L A T
Sbjct: 132 KGSI-ILIGATTENPSFEINGALLSRCRVFVLQALT 166


>gi|18426902|ref|NP_064520.2| ATPase WRNIP1 isoform 1 [Homo sapiens]
 gi|73622085|sp|Q96S55|WRIP1_HUMAN RecName: Full=ATPase WRNIP1; AltName: Full=Werner
           helicase-interacting protein 1
 gi|55661735|emb|CAH73664.1| Werner helicase interacting protein 1 [Homo sapiens]
 gi|119575489|gb|EAW55085.1| Werner helicase interacting protein 1, isoform CRA_a [Homo sapiens]
          Length = 665

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 75/151 (49%), Gaps = 21/151 (13%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75
           +RP TL+++ GQ +A      L+  +E  +     +  ++  GPPG GKTTLA ++A   
Sbjct: 231 MRPDTLQDYFGQSKAVGQDTLLRSLLETNE-----IPSLILWGPPGCGKTTLAHIIASNS 285

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPA 128
           ++  + F + S    AK  D+  ++   ++       + +LFIDEIHR +   ++   P 
Sbjct: 286 KKHSIRFVTLSA-TNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPH 344

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLI 157
           +E   + L+    E PS +     LSR  +I
Sbjct: 345 VECGTITLIGATTENPSFQVNAALLSRCRVI 375


>gi|257784257|ref|YP_003179474.1| AAA ATPase central domain-containing protein [Atopobium parvulum
           DSM 20469]
 gi|257472764|gb|ACV50883.1| AAA ATPase central domain protein [Atopobium parvulum DSM 20469]
          Length = 443

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 58/120 (48%), Gaps = 16/120 (13%)

Query: 22  LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP TL+ + GQ +A    S L+  IE      + L  VL  GP G GKTTLA+++A   
Sbjct: 23  MRPTTLDGYVGQEDAVGPGSWLRKAIEH-----DTLSSVLLYGPAGTGKTTLARIIAHTT 77

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131
              F   S  +     DL   +   E        R +LFIDEIHR +   ++ L  A+ED
Sbjct: 78  HAEFVEVSA-ITGTVKDLRREIEAAESRLLTAGRRTILFIDEIHRFTRSQQDALLHAVED 136


>gi|331004982|ref|ZP_08328392.1| putative ATPase associated with chromosome architecture [gamma
           proteobacterium IMCC1989]
 gi|330421224|gb|EGG95480.1| putative ATPase associated with chromosome architecture [gamma
           proteobacterium IMCC1989]
          Length = 466

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 68/131 (51%), Gaps = 12/131 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+T++++ GQ    +  K   EA +     L  ++  GPPG+GKT+LA+++A  +   
Sbjct: 35  LRPQTIQDYIGQQHLLAEGKPLREAIEK--GQLHSMILWGPPGVGKTSLARMLAHLIDAE 92

Query: 82  FRSTSGPVIAKAGDL-----AALLTNLED--RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           + S S  V+A   D+      A LT      R +LF+DE+HR +   ++   P +E+  +
Sbjct: 93  YTSLSA-VLAGVKDIRQAVATAQLTQQTSGRRTLLFVDEVHRFNKAQQDAFLPYVENGTI 151

Query: 135 DLM--VGEGPS 143
             +    E PS
Sbjct: 152 TFIGATTENPS 162


>gi|329120562|ref|ZP_08249225.1| replication-associated recombination protein A [Neisseria
           bacilliformis ATCC BAA-1200]
 gi|327460786|gb|EGF07120.1| replication-associated recombination protein A [Neisseria
           bacilliformis ATCC BAA-1200]
          Length = 456

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 70/151 (46%), Gaps = 16/151 (10%)

Query: 14  QEDADIS-LLRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           Q DA ++  LRP TL +  GQ   +     L+V +E  K  +     +L  GPPG+GKTT
Sbjct: 27  QPDAPLAERLRPHTLADVIGQQHLIGEGKPLRVAVEGGKPHS-----MLLWGPPGVGKTT 81

Query: 70  LAQVVARELGVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LA+++A+     F   S        I +A D A +        +LF+DE+HR +   ++ 
Sbjct: 82  LARILAQSFNAQFLPVSAVFSGVKDIREAIDKAEIALQQGRGTILFVDEVHRFNKAQQDA 141

Query: 125 LYPAMEDFQLDLM--VGEGPSARSVKINLSR 153
             P +E   L  +    E PS       LSR
Sbjct: 142 FLPHVESGLLTFIGATTENPSFEVNPALLSR 172


>gi|260913897|ref|ZP_05920371.1| replication-associated recombination protein A [Pasteurella
           dagmatis ATCC 43325]
 gi|260631984|gb|EEX50161.1| replication-associated recombination protein A [Pasteurella
           dagmatis ATCC 43325]
          Length = 446

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 7/115 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP TL ++ GQ       K   +A +     +  ++F GPPG GKTTLA+++A+ +   
Sbjct: 20  MRPTTLAQYYGQSHLIGEGKPLRKAIEVGH--IHSMIFWGPPGTGKTTLAEIIAQRINAE 77

Query: 82  FRS----TSGPVIAKAGDLAALLTNLED-RDVLFIDEIHRLSIIVEEILYPAMED 131
                  TSG    +     A    L D R +LF+DE+HR +   ++   P +ED
Sbjct: 78  VERISAVTSGVKEIREAIERAKQNRLSDRRTILFVDEVHRFNKSQQDAFLPHIED 132


>gi|210633878|ref|ZP_03297893.1| hypothetical protein COLSTE_01810 [Collinsella stercoris DSM 13279]
 gi|210159047|gb|EEA90018.1| hypothetical protein COLSTE_01810 [Collinsella stercoris DSM 13279]
          Length = 446

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/128 (33%), Positives = 63/128 (49%), Gaps = 17/128 (13%)

Query: 22  LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP +L+++ GQ +A    S L+  IE      + L  V+  GP G GKTTLA ++A   
Sbjct: 28  MRPSSLDDYVGQEKAVGPGSWLRSAIEH-----DVLSSVILYGPAGTGKTTLAHIIAAHT 82

Query: 79  GVNFRSTSGPVIAKAGDL-------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
              F   S  V     DL          L   + R +LFIDEIHR S   ++ L  A+E+
Sbjct: 83  KSEFVEVSA-VTGTVKDLRREIDEAKHRLMMFDRRTILFIDEIHRFSRSQQDALLHAVEN 141

Query: 132 FQLDLMVG 139
             + +M+G
Sbjct: 142 RTV-VMIG 148


>gi|19552845|ref|NP_600847.1| recombination factor protein RarA [Corynebacterium glutamicum ATCC
           13032]
 gi|21324402|dbj|BAB99026.1| Uncharacterized ATPase related to the helicase subunit of the
           Holliday junction resolvase [Corynebacterium glutamicum
           ATCC 13032]
          Length = 459

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 15/132 (11%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL+E  GQ         L+  IE +   +     V+  GPPG GKTT+A +++   
Sbjct: 44  MRPRTLDEVVGQQHLLGEGRPLRRLIEGSGDAS-----VILYGPPGTGKTTIASLISAAA 98

Query: 79  GVNFRS----TSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           G  F +    +SG    +A  + A +   L  R VLFIDE+HR S   ++ L  A+E+  
Sbjct: 99  GDRFVAMSALSSGVKEVRAVIERARMDLQLGQRTVLFIDEVHRFSKTQQDALLSAVENRT 158

Query: 134 LDLMVG--EGPS 143
           + L+    E PS
Sbjct: 159 VLLVAATTENPS 170


>gi|114605194|ref|XP_001159632.1| PREDICTED: ATPase WRNIP1 isoform 3 [Pan troglodytes]
          Length = 665

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 75/151 (49%), Gaps = 21/151 (13%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75
           +RP TL+++ GQ +A      L+  +E  +     +  ++  GPPG GKTTLA ++A   
Sbjct: 231 MRPDTLQDYFGQSKAVGQDTLLRSLLETNE-----IPSLILWGPPGCGKTTLAHIIASNS 285

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPA 128
           ++  + F + S    AK  D+  ++   ++       + +LFIDEIHR +   ++   P 
Sbjct: 286 KKHSIRFVTLSA-TNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPH 344

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLI 157
           +E   + L+    E PS +     LSR  +I
Sbjct: 345 VECGTITLIGATTENPSFQVNAALLSRCRVI 375


>gi|13470578|ref|NP_102147.1| recombination factor protein RarA [Mesorhizobium loti MAFF303099]
 gi|14021320|dbj|BAB47933.1| mlr0329 [Mesorhizobium loti MAFF303099]
          Length = 435

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 67/138 (48%), Gaps = 16/138 (11%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKAR---AEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+ L E  GQ           + A  R   + +L  ++F GPPG GKTT+A+++A E 
Sbjct: 23  LRPKNLGEVVGQEHLTGP-----DGALTRLIGSGSLGSMIFWGPPGTGKTTVARLLAGET 77

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDF 132
            + F   S  V +   DL  +    + R       +LF+DEIHR +   ++   P MED 
Sbjct: 78  SLAFEQISA-VFSGVADLKKVFETAKLRRANGRQTLLFVDEIHRFNRAQQDSFLPVMEDG 136

Query: 133 QLDLMVGEGPSARSVKIN 150
            + ++VG      S ++N
Sbjct: 137 TV-VLVGATTENPSFELN 153


>gi|227892661|ref|ZP_04010466.1| crossover junction endodeoxyribonuclease [Lactobacillus ultunensis
           DSM 16047]
 gi|227865532|gb|EEJ72953.1| crossover junction endodeoxyribonuclease [Lactobacillus ultunensis
           DSM 16047]
          Length = 438

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 17/124 (13%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L+E  GQ       K+     +AR   L  ++  GPPG+GKT++A  +A      
Sbjct: 8   MRPKNLDEVVGQQHLIGPGKIIRRMVEARL--LSSMILYGPPGIGKTSIASAIAGSTKYA 65

Query: 82  FRSTSGPV--------IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           FR  +           +A+ G ++  +       VL +DEIHRL    ++ L P +E  Q
Sbjct: 66  FRKLNAATDGKKQLQQVAEEGKMSGTV-------VLLLDEIHRLDKTKQDFLLPLLESGQ 118

Query: 134 LDLM 137
           + L+
Sbjct: 119 IILI 122


>gi|110804893|ref|YP_688413.1| recombination factor protein RarA [Shigella flexneri 5 str. 8401]
 gi|110614441|gb|ABF03108.1| putative polynucleotide enzyme [Shigella flexneri 5 str. 8401]
          Length = 447

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 63/132 (47%), Gaps = 15/132 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP  L ++ GQ   + A   L   IEA       L  ++  GPPG GKTTLA+V+AR  
Sbjct: 20  MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             +       TSG   I +A + A    N   R  LF+DE+HR +   ++   P +ED  
Sbjct: 75  NADVERISAVTSGVKEIREAIERARQNRNAGRRTSLFVDEVHRFNKSQQDAFLPHIEDGT 134

Query: 134 LDLM--VGEGPS 143
           +  +    E PS
Sbjct: 135 ITFIGATTENPS 146


>gi|315498196|ref|YP_004087000.1| aaa atpase central domain protein [Asticcacaulis excentricus CB 48]
 gi|315416208|gb|ADU12849.1| AAA ATPase central domain protein [Asticcacaulis excentricus CB 48]
          Length = 451

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 58/120 (48%), Gaps = 19/120 (15%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH-----VLFVGPPGLGKTTLAQVVAR 76
           LRP+TL E  GQ          +    A A A+D      ++  GPPG+GKTT+A+++A 
Sbjct: 35  LRPQTLSEIVGQDH-------LLGEGGAIARAIDRGFLPSLILWGPPGVGKTTIARLLAA 87

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130
            +G  F+  S  V +   DL       +       R VLF+DEIHR +   ++   P +E
Sbjct: 88  SVGYEFQQISA-VFSGVADLKKAFEYAQARRTQGVRSVLFVDEIHRFNRAQQDSFLPYVE 146


>gi|293603799|ref|ZP_06686215.1| replication-associated recombination protein A [Achromobacter
           piechaudii ATCC 43553]
 gi|292817797|gb|EFF76862.1| replication-associated recombination protein A [Achromobacter
           piechaudii ATCC 43553]
          Length = 446

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 108/254 (42%), Gaps = 49/254 (19%)

Query: 22  LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPR+L +  GQ         L+V  E+ +  +     ++F GPPG+GKTTLA+++A   
Sbjct: 22  LRPRSLSDVVGQSHLLGPDKPLRVAFESGRPHS-----MIFWGPPGVGKTTLARLMADGF 76

Query: 79  GVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
              F + S  +     I +A  +A +      R +LF+DE+HR +   ++   P +E   
Sbjct: 77  DAQFIAISAVLGGVKDIREAVTVAQVAQGQGRRTILFVDEVHRFNKAQQDAFLPYVES-- 134

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLL--TNPLQDRFGIPIRLNFYEIEDLKTI 191
                               FT I ATT        + L  R  + + L     E+L+ +
Sbjct: 135 ------------------GLFTFIGATTENPSFEVNSALLSRARVYV-LQSLSTEELQQL 175

Query: 192 VQRGAKL--------TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           V R              + +  +A  ++A  + G  R   RL+  V   AE   A++  R
Sbjct: 176 VDRAVHALNEGMDEGEAIRIEPDAREQLAAWADGDAR---RLISAVEVVAE--SAQSAGR 230

Query: 244 EIADAALLRLAIDK 257
           +  DAA L +++ +
Sbjct: 231 DTVDAAWLEISLSQ 244


>gi|62390516|ref|YP_225918.1| recombination factor protein RarA [Corynebacterium glutamicum ATCC
           13032]
 gi|145295755|ref|YP_001138576.1| recombination factor protein RarA [Corynebacterium glutamicum R]
 gi|41325853|emb|CAF21642.1| Uncharacterized ATPase related to the helicase subunit of the
           Holliday junction resolvase [Corynebacterium glutamicum
           ATCC 13032]
 gi|140845675|dbj|BAF54674.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 472

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 15/132 (11%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL+E  GQ         L+  IE +   +     V+  GPPG GKTT+A +++   
Sbjct: 57  MRPRTLDEVVGQQHLLGEGRPLRRLIEGSGDAS-----VILYGPPGTGKTTIASLISAAA 111

Query: 79  GVNFRS----TSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           G  F +    +SG    +A  + A +   L  R VLFIDE+HR S   ++ L  A+E+  
Sbjct: 112 GDRFVAMSALSSGVKEVRAVIERARMDLQLGQRTVLFIDEVHRFSKTQQDALLSAVENRT 171

Query: 134 LDLMVG--EGPS 143
           + L+    E PS
Sbjct: 172 VLLVAATTENPS 183


>gi|163855896|ref|YP_001630194.1| recombination factor protein RarA [Bordetella petrii DSM 12804]
 gi|163259624|emb|CAP41925.1| conserved hypothetical protein [Bordetella petrii]
          Length = 446

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 66/143 (46%), Gaps = 17/143 (11%)

Query: 22  LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPRTL E  GQ         L+V  ++ +  +     ++F GPPG+GKTTLA+++A   
Sbjct: 22  LRPRTLSEVVGQSHLLGPDKPLRVAFDSGRPHS-----MIFWGPPGVGKTTLARLMADGF 76

Query: 79  GVNFRSTSGPVIAKAGDL------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED- 131
              F + S  V+    D+      A +      R +LF+DE+HR +   ++   P +E  
Sbjct: 77  DAQFIAISA-VLGGVKDIRDAVVTAQVAQGQGRRTILFVDEVHRFNKAQQDAFLPYVESG 135

Query: 132 -FQLDLMVGEGPSARSVKINLSR 153
            F       E PS       LSR
Sbjct: 136 LFTFIGATTENPSFEVNSALLSR 158


>gi|15221721|ref|NP_173839.1| AAA-type ATPase family protein [Arabidopsis thaliana]
 gi|2829884|gb|AAC00592.1| Hypothetical protein [Arabidopsis thaliana]
 gi|332192391|gb|AEE30512.1| AAA-type ATPase-like protein [Arabidopsis thaliana]
          Length = 525

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 84/188 (44%), Gaps = 38/188 (20%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           R  L S +  Q       +RPRTL++  GQ    S   +   A ++    L  ++F GPP
Sbjct: 89  RHKLSSSSHRQHQPLSERMRPRTLDDVVGQDHLLSPSSLLRSAVES--NRLPSIVFWGPP 146

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-----------------R 106
           G GKT++A+ +         S+  P + +   L+A+ + ++D                 R
Sbjct: 147 GTGKTSIAKSL-------INSSKDPSLYRFVSLSAVTSGVKDVRDAVESAKRLNLEGRKR 199

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG---EGPSARSVKINLSRFTLIAATTRV 163
            VLF+DE+HR +   ++   P +ED  + L +G   E PS   +   LSR        RV
Sbjct: 200 TVLFMDEVHRFNKSQQDTFLPVIEDGSI-LFIGATTENPSFHLITPLLSR-------CRV 251

Query: 164 GLLTNPLQ 171
            L  NPL+
Sbjct: 252 -LTLNPLK 258


>gi|27229310|ref|NP_758835.1| ATPase WRNIP1 [Rattus norvegicus]
 gi|73920471|sp|Q8CG07|WRIP1_RAT RecName: Full=ATPase WRNIP1; AltName: Full=Werner
           helicase-interacting protein 1
 gi|25989624|gb|AAN15750.1| Werner syndrome-interacting protein-like protein [Rattus
           norvegicus]
 gi|68534260|gb|AAH98652.1| Werner helicase interacting protein 1 [Rattus norvegicus]
 gi|149045258|gb|EDL98344.1| Werner helicase interacting protein 1, isoform CRA_b [Rattus
           norvegicus]
          Length = 660

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 74/151 (49%), Gaps = 21/151 (13%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75
           +RP TL+++ GQ  A      L+  +E  +     +  ++  GPPG GKTTLA ++A   
Sbjct: 226 MRPDTLQDYIGQSRAVGQETLLRSLLETNE-----IPSLILWGPPGCGKTTLAHIIANNS 280

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPA 128
           ++  + F + S    AK  D+  ++   ++       + +LFIDEIHR +   ++   P 
Sbjct: 281 KKHSIRFVTLSA-TNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPH 339

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLI 157
           +E   + L+    E PS +     LSR  +I
Sbjct: 340 VECGTITLIGATTENPSFQVNTALLSRCRVI 370


>gi|326798773|ref|YP_004316592.1| ATPase AAA [Sphingobacterium sp. 21]
 gi|326549537|gb|ADZ77922.1| AAA ATPase central domain protein [Sphingobacterium sp. 21]
          Length = 426

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 69/143 (48%), Gaps = 16/143 (11%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  + ++ GQ        V   + ++    L  ++  GPPG+GKTTLA ++++ L   
Sbjct: 11  MRPENINDYVGQYHLLGPDAVLRRSIESNN--LPSMILWGPPGVGKTTLAYIISKRLNRP 68

Query: 82  FRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           F + S           VI +A    A+    +D+ +LFIDEIHR S   ++ L  A+E  
Sbjct: 69  FFNLSAINAGVKDVREVIEQANLSKAM---FQDQPILFIDEIHRFSKSQQDSLLSAVERG 125

Query: 133 QLDLM--VGEGPSARSVKINLSR 153
            + L+    E PS   +   LSR
Sbjct: 126 LVTLIGATTENPSFEVISALLSR 148


>gi|78186607|ref|YP_374650.1| recombination factor protein RarA [Chlorobium luteolum DSM 273]
 gi|78166509|gb|ABB23607.1| Recombination protein MgsA [Chlorobium luteolum DSM 273]
          Length = 457

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 69/138 (50%), Gaps = 16/138 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP++++E  GQ   V     L+ F+   +     L  ++F GPPG GKTTLA++ A  L
Sbjct: 31  VRPQSIDEMAGQEHLVGPMGPLRRFLGGGQ-----LPSMIFWGPPGSGKTTLAEICASAL 85

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDF 132
              F   S  + +   D+  +L N         R +LFIDEIHR +   ++ L  A+E  
Sbjct: 86  DFRFEQLSA-IESGVKDVRRVLENAASSRARGIRTLLFIDEIHRFNKSQQDTLLHAIEQ- 143

Query: 133 QLDLMVGEGPSARSVKIN 150
            + +++G      S +IN
Sbjct: 144 GVVVLIGATTENPSFEIN 161


>gi|26451436|dbj|BAC42817.1| unknown protein [Arabidopsis thaliana]
          Length = 525

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 84/188 (44%), Gaps = 38/188 (20%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           R  L S +  Q       +RPRTL++  GQ    S   +   A ++    L  ++F GPP
Sbjct: 89  RHKLSSSSHRQHQPLSERMRPRTLDDVAGQDHLLSPSSLLRSAVES--NRLPSIVFWGPP 146

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-----------------R 106
           G GKT++A+ +         S+  P + +   L+A+ + ++D                 R
Sbjct: 147 GTGKTSIAKSL-------INSSKDPSLYRFVSLSAVTSGVKDVRDAVESAKRLNLEGRKR 199

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG---EGPSARSVKINLSRFTLIAATTRV 163
            VLF+DE+HR +   ++   P +ED  + L +G   E PS   +   LSR        RV
Sbjct: 200 TVLFMDEVHRFNKSQQDTFLPVIEDGSI-LFIGATTENPSFHLITPLLSR-------CRV 251

Query: 164 GLLTNPLQ 171
            L  NPL+
Sbjct: 252 -LTLNPLK 258


>gi|326405680|gb|ADZ62751.1| chromosome segregation helicase [Lactococcus lactis subsp. lactis
           CV56]
          Length = 419

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 60/124 (48%), Gaps = 17/124 (13%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR ++E  GQ       K+     +   + L  ++  GPPG+GKT++A  +A  + V 
Sbjct: 9   MRPRNIDEIVGQKHLVGKGKIIRRMVET--QLLSSMILYGPPGIGKTSIASAIAGTMNVA 66

Query: 82  FRSTSGPV--------IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           FR+ +           IA   + +  L       VL +DEIHRL    ++ L P +E+ Q
Sbjct: 67  FRTFNATTDTKKRLQEIASEAEFSGQL-------VLLLDEIHRLDKPKQDFLLPLLENGQ 119

Query: 134 LDLM 137
           + L+
Sbjct: 120 VILI 123


>gi|315038022|ref|YP_004031590.1| recombination factor protein RarA [Lactobacillus amylovorus GRL
           1112]
 gi|312276155|gb|ADQ58795.1| recombination factor protein RarA [Lactobacillus amylovorus GRL
           1112]
 gi|327183302|gb|AEA31749.1| recombination factor protein RarA [Lactobacillus amylovorus GRL
           1118]
          Length = 434

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 17/124 (13%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L+E  GQ       K+     +AR   L  ++  GPPG+GKT++A  +A      
Sbjct: 8   MRPKNLDEVVGQQHLIGPGKIIRRMVEARL--LSSMILYGPPGIGKTSIASAIAGSTKYA 65

Query: 82  FRSTSGPV--------IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           FR  +           +A+ G ++  +       VL +DEIHRL    ++ L P +E  Q
Sbjct: 66  FRKLNAATDGKKQLQQVAEEGKMSGTV-------VLLLDEIHRLDKTKQDFLLPLLESGQ 118

Query: 134 LDLM 137
           + L+
Sbjct: 119 VILI 122


>gi|297676986|ref|XP_002816398.1| PREDICTED: LOW QUALITY PROTEIN: ATPase WRNIP1-like [Pongo abelii]
          Length = 658

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 75/151 (49%), Gaps = 21/151 (13%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75
           +RP TL+++ GQ +A      L+  +E  +     +  ++  GPPG GKTTLA ++A   
Sbjct: 224 MRPDTLQDYFGQSKAVGQDTLLRSLLETNE-----IPSLILWGPPGCGKTTLAHIIANNS 278

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPA 128
           ++  + F + S    AK  D+  ++   ++       + +LFIDEIHR +   ++   P 
Sbjct: 279 KKHSIRFVTLSA-TNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPH 337

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLI 157
           +E   + L+    E PS +     LSR  +I
Sbjct: 338 VECGTITLIGATTENPSFQVNAALLSRCRVI 368


>gi|281355193|ref|ZP_06241687.1| AAA ATPase central domain protein [Victivallis vadensis ATCC
           BAA-548]
 gi|281318073|gb|EFB02093.1| AAA ATPase central domain protein [Victivallis vadensis ATCC
           BAA-548]
          Length = 438

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 80/157 (50%), Gaps = 16/157 (10%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVL 58
           M+ E L S  V +  AD   +RP +L+E  GQ   +   + L+  I++ +     L   +
Sbjct: 1   MEEETLFSAGVGRPLAD--RMRPASLDEIVGQDHLLGPDAPLRRMIDSGR-----LASFI 53

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDE 113
             GPPG GKTTLA+++A    ++F + S        + KA ++A    +  +  +LFIDE
Sbjct: 54  LWGPPGCGKTTLARIMATRTSLHFVALSAVFSGIADLRKAFEVAGKRRSCGEGTLLFIDE 113

Query: 114 IHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN 150
           IHR +   ++   P +E+  + ++VG      S ++N
Sbjct: 114 IHRFNRAQQDGFLPYVENGTV-ILVGATTENPSFELN 149


>gi|301789397|ref|XP_002930115.1| PREDICTED: LOW QUALITY PROTEIN: ATPase WRNIP1-like [Ailuropoda
           melanoleuca]
          Length = 618

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 74/151 (49%), Gaps = 21/151 (13%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75
           +RP TL+++ GQ  A      L+  +E  +     +  ++  GPPG GKTTLA ++A   
Sbjct: 184 MRPDTLQDYIGQSRAVGQETLLRSLLETNE-----IPSLILWGPPGCGKTTLAHIIANNS 238

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPA 128
           ++  + F + S    AK  D+  ++   ++       + +LFIDEIHR +   ++   P 
Sbjct: 239 KKHSIRFVTLSA-TNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPH 297

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLI 157
           +E   + L+    E PS +     LSR  +I
Sbjct: 298 VECGTITLIGATTENPSFQVNAALLSRCRVI 328


>gi|297623701|ref|YP_003705135.1| AAA ATPase central domain-containing protein [Truepera radiovictrix
           DSM 17093]
 gi|297164881|gb|ADI14592.1| AAA ATPase central domain protein [Truepera radiovictrix DSM 17093]
          Length = 439

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 67/143 (46%), Gaps = 10/143 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR L E  GQ       K     A  R   L  +L  GPPG+GKTTLA+++A   G +
Sbjct: 15  VRPRQLHEIVGQRHLLGPGKPLAVMATGR---LRSLLLWGPPGVGKTTLARLLAESSGAH 71

Query: 82  FRS----TSGPVIAKAGDLAALLTNLE-DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           F      T+G    +A    A     +  + +LF+DE+HR +   +++L P +ED  L L
Sbjct: 72  FVGLSAVTAGVKEVRAVAAEAAERRAQGGQTLLFLDEVHRFNKAQQDLLLPFVEDGTLTL 131

Query: 137 M--VGEGPSARSVKINLSRFTLI 157
           +    E PS        SR  L 
Sbjct: 132 IGATTENPSFEVTGALRSRLQLF 154


>gi|293392025|ref|ZP_06636359.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290952559|gb|EFE02678.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 446

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 56/121 (46%), Gaps = 19/121 (15%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP TL ++ GQ       K   +A +A    +  ++F GPPG GKTTLA++++  +   
Sbjct: 20  MRPTTLAQYCGQSHLLGEGKPLRKAIEAGY--VHSMIFWGPPGTGKTTLAEIISHRINAE 77

Query: 82  FRSTSGPVI-----------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
               S               AK   LA L      R +LF+DE+HR +   ++   P +E
Sbjct: 78  VERISAVTSGIKEIREAIDKAKQNKLAGL------RTILFVDEVHRFNKSQQDAFLPHIE 131

Query: 131 D 131
           D
Sbjct: 132 D 132


>gi|193215466|ref|YP_001996665.1| recombination factor protein RarA [Chloroherpeton thalassium ATCC
           35110]
 gi|193088943|gb|ACF14218.1| AAA ATPase central domain protein [Chloroherpeton thalassium ATCC
           35110]
          Length = 439

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 74/143 (51%), Gaps = 17/143 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP+TL+E  GQ    ++ S  + F+ +          ++  GPPG+GKTTLA +++R  
Sbjct: 24  MRPKTLDEVIGQPHLTDSHSPFRQFLSSGD-----FPSMILWGPPGVGKTTLALLLSRNS 78

Query: 79  GVNFRSTSGPVIAKAGDLAALLTN-LED-----RDVLFIDEIHRLSIIVEEILYPAMEDF 132
           G  +   S  + +   ++ +++T  L++     +  LFIDEIHR +   ++ L  A+E  
Sbjct: 79  GYEYMQISA-IDSGVKEVRSVITQALQNHKRGKKTSLFIDEIHRFNKAQQDALLGAVEKG 137

Query: 133 QLDLM--VGEGPSARSVKINLSR 153
            L L+    E PS   +   LSR
Sbjct: 138 TLKLIGATTENPSFEVIPALLSR 160


>gi|111038318|gb|ABH03541.1| putative Werner helicase-interacting protein [Arabidopsis thaliana]
          Length = 524

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 84/188 (44%), Gaps = 38/188 (20%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           R  L S +  Q       +RPRTL++  GQ    S   +   A ++    L  ++F GPP
Sbjct: 88  RHKLSSSSHRQHQPLSERMRPRTLDDVVGQDHLLSPSSLLRSAVES--NRLPSIVFWGPP 145

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-----------------R 106
           G GKT++A+ +         S+  P + +   L+A+ + ++D                 R
Sbjct: 146 GTGKTSIAKSL-------INSSKDPSLYRFVSLSAVTSGVKDVRDAVESAKRLNLEGRKR 198

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG---EGPSARSVKINLSRFTLIAATTRV 163
            VLF+DE+HR +   ++   P +ED  + L +G   E PS   +   LSR        RV
Sbjct: 199 TVLFMDEVHRFNKSQQDTFLPVIEDGSI-LFIGATTENPSFHLITPLLSR-------CRV 250

Query: 164 GLLTNPLQ 171
            L  NPL+
Sbjct: 251 -LTLNPLK 257


>gi|50954757|ref|YP_062045.1| recombination factor protein RarA [Leifsonia xyli subsp. xyli str.
           CTCB07]
 gi|50951239|gb|AAT88940.1| ATPase related to the helicase subunit [Leifsonia xyli subsp. xyli
           str. CTCB07]
          Length = 446

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 68/134 (50%), Gaps = 14/134 (10%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP +L++  GQ   +   S L       + ++ ++  +L+ GPPG GKTTLAQ +A   
Sbjct: 19  MRPTSLDDVAGQRHLLRPGSPLVALASDKEGQSGSVSVILW-GPPGTGKTTLAQAIAHSS 77

Query: 79  GVNFRSTSGPVIAKAGDLAALLTN-LEDRD------VLFIDEIHRLSIIVEEILYPAMED 131
           G  F   S  V A   D+  ++   L  RD      VLF+DEIHR +   ++ L P +E+
Sbjct: 78  GRRFVELSA-VTAGVKDVRLVMDEALSTRDLYGVSTVLFLDEIHRFTKAQQDALLPGVEN 136

Query: 132 FQLDLMVG--EGPS 143
             + L+    E PS
Sbjct: 137 GWVILVAATTENPS 150


>gi|71274773|ref|ZP_00651061.1| AAA ATPase, central region [Xylella fastidiosa Dixon]
 gi|71901409|ref|ZP_00683500.1| AAA ATPase, central region [Xylella fastidiosa Ann-1]
 gi|170729983|ref|YP_001775416.1| recombination factor protein RarA [Xylella fastidiosa M12]
 gi|71164505|gb|EAO14219.1| AAA ATPase, central region [Xylella fastidiosa Dixon]
 gi|71728814|gb|EAO30954.1| AAA ATPase, central region [Xylella fastidiosa Ann-1]
 gi|167964776|gb|ACA11786.1| ATPase [Xylella fastidiosa M12]
          Length = 455

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 65/134 (48%), Gaps = 8/134 (5%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRTL E  GQ    +  +    A  +    +  ++  GPPG GKTTL+ ++A  +   
Sbjct: 27  MRPRTLHEMVGQKRLLAPDRALHRAVAS--GNVHSMILWGPPGCGKTTLSLLLAHYIDAE 84

Query: 82  FRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ S      P + +    AA   +   R VLF+DE+HR + + ++   P +E   + +
Sbjct: 85  FRAVSAVLSGLPEVRQILAEAAQRFSEGRRTVLFVDEVHRFNKMQQDAFLPHIERGSI-I 143

Query: 137 MVGEGPSARSVKIN 150
            VG      S ++N
Sbjct: 144 FVGATTENPSFELN 157


>gi|332285169|ref|YP_004417080.1| ATPase [Pusillimonas sp. T7-7]
 gi|330429122|gb|AEC20456.1| ATPase [Pusillimonas sp. T7-7]
          Length = 443

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 66/143 (46%), Gaps = 17/143 (11%)

Query: 22  LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL +  GQ         LKV  ++ +  +     ++F GPPG+GKTTLA+++A   
Sbjct: 24  MRPRTLADVVGQAHLLGPGKPLKVAFDSGRPHS-----MIFWGPPGVGKTTLARLMADGF 78

Query: 79  GVNFRSTSGPVIAKAGDL------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED- 131
              F + S  V+    D+      A +      R +LF+DE+HR +   ++   P +E  
Sbjct: 79  DAQFLAMSA-VLGGVKDIREAVVSAQVAQGQGRRTILFVDEVHRFNKAQQDAFLPYVESG 137

Query: 132 -FQLDLMVGEGPSARSVKINLSR 153
            F       E PS       LSR
Sbjct: 138 LFTFIGATTENPSFEVNSALLSR 160


>gi|224370722|ref|YP_002604886.1| putative ATPase [Desulfobacterium autotrophicum HRM2]
 gi|223693439|gb|ACN16722.1| putative ATPase [Desulfobacterium autotrophicum HRM2]
          Length = 451

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 73/262 (27%), Positives = 118/262 (45%), Gaps = 36/262 (13%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L E  GQ    +  K+ + +A         +L+ GPPG GKTTLA ++A+E   +
Sbjct: 24  MRPQRLGEVVGQDHVAAPGKI-LHSAITNDRVFSTILW-GPPGCGKTTLAGIIAKETSSH 81

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F   S  V++   D+ A++   ++       R ++F+DEIHR +   ++     +E   +
Sbjct: 82  FMQLSA-VLSGVKDIRAVIETAKEQRRIRGRRTLVFVDEIHRFNKAQQDAFLHHVETGAI 140

Query: 135 DLMVG---EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
            ++VG   E PS   +   +SR  +I          N L +R  + I      +E   T 
Sbjct: 141 -VLVGATTENPSFEVIPALVSRCRVIT--------LNRLGERDIVTI------LERAATD 185

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV---AHAKT---ITREI 245
             RG    G+  + EA   IA  + G  R A   L  +  +A     A  KT   IT E 
Sbjct: 186 PVRGLGSLGIIFSAEALNYIAATADGDVRAALATLETIGVYASARKGAGGKTPSAITPED 245

Query: 246 ADAALLRLAI--DKMGFDQLDL 265
             AA+ + A+  DK G +  +L
Sbjct: 246 VAAAVEKKALRYDKSGEEHFNL 267


>gi|168182648|ref|ZP_02617312.1| ATPase, AAA family [Clostridium botulinum Bf]
 gi|237796008|ref|YP_002863560.1| recombination factor protein RarA [Clostridium botulinum Ba4 str.
           657]
 gi|182674164|gb|EDT86125.1| ATPase, AAA family [Clostridium botulinum Bf]
 gi|229261667|gb|ACQ52700.1| ATPase, AAA family [Clostridium botulinum Ba4 str. 657]
          Length = 416

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 110/257 (42%), Gaps = 26/257 (10%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           L+RP+ LE+F GQ    S  K      K ++  + + +F GPPG GKTTLA ++A  +  
Sbjct: 7   LMRPKKLEDFVGQKHILSENKPLYNLMKNKS--ICNSIFYGPPGTGKTTLANIMANYVDK 64

Query: 81  NFR--STSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
            F   + +   I    ++ + + +L +    VL+IDE+   +   ++ L   +ED ++ L
Sbjct: 65  KFYRLNATTASIKDIQEITSSINSLLNYSGVVLYIDELQHFTKKQQQALLEFIEDGRVIL 124

Query: 137 MVG--EGPSARSVKINLSRFTLIAAT--TRVGLL------TNPLQDRFGIPIRLNFYEIE 186
           +    E P     K  LSR  +       R  ++       N L D+ GI I+  F  +E
Sbjct: 125 IASTTENPYFVIHKAILSRCNIFQFKPLNREDIILGLEKAINKLIDK-GINIKYTFESLE 183

Query: 187 DLKTIVQ----RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV-----AH 237
            +  I Q    +   +  LAV       I +       +A   +R      E      A 
Sbjct: 184 YIGEICQGDYRKAYNILELAVNSRCGFNIEITLDYIESLAQSNIRADATGDEYYNILSAF 243

Query: 238 AKTITREIADAALLRLA 254
            K+I    ADAA+  LA
Sbjct: 244 QKSIRGSDADAAVHYLA 260


>gi|161378167|ref|NP_298742.2| recombination factor protein RarA [Xylella fastidiosa 9a5c]
          Length = 455

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 67/137 (48%), Gaps = 14/137 (10%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV---LFVGPPGLGKTTLAQVVAREL 78
           +RPRTL E  GQ    +      + A  RA A  HV   +  GPPG GKTTL+ ++A+ +
Sbjct: 27  MRPRTLHEMVGQKRLLAP-----DRALHRAVASGHVHSMILWGPPGCGKTTLSLLLAQYI 81

Query: 79  GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
              F + S      P + +    AA   +   R VLF+DE+HR + + ++   P +E   
Sbjct: 82  DAEFHAVSAVLSGLPEVRQILAEAAQRFSEGRRTVLFVDEVHRFNNMQQDAFLPHIERGS 141

Query: 134 LDLMVGEGPSARSVKIN 150
           + + VG      S ++N
Sbjct: 142 I-IFVGATTENPSFELN 157


>gi|115525555|ref|YP_782466.1| recombination factor protein RarA [Rhodopseudomonas palustris
           BisA53]
 gi|115519502|gb|ABJ07486.1| Recombination protein MgsA [Rhodopseudomonas palustris BisA53]
          Length = 442

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 64/135 (47%), Gaps = 10/135 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPR L +  GQ              + R+  L  ++F GPPG GKTT+A+++A    ++
Sbjct: 30  LRPRALSDVVGQDHILGPDGALTRMLETRS--LGSLVFWGPPGTGKTTVARLLADATELH 87

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F   S  V +   DL  +      R       +LF+DE+HR +   ++   P MED  + 
Sbjct: 88  FEQISA-VFSGVADLKKVFDAARARREMGRGTLLFVDEVHRFNKAQQDSFLPVMEDGTV- 145

Query: 136 LMVGEGPSARSVKIN 150
           ++VG      S ++N
Sbjct: 146 VLVGATTENPSFELN 160


>gi|302389240|ref|YP_003825061.1| Recombination protein MgsA [Thermosediminibacter oceani DSM 16646]
 gi|302199868|gb|ADL07438.1| Recombination protein MgsA [Thermosediminibacter oceani DSM 16646]
          Length = 446

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 100/208 (48%), Gaps = 23/208 (11%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR L+EF GQ       K+  +  +   + +  ++  GPPG+GKTTLA ++A      
Sbjct: 23  MRPRNLDEFVGQDHLLGRGKILRKLIEN--DLITSMILWGPPGVGKTTLAMIIAEMTRAR 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F + S  V++   ++  ++   ++      R ++FIDEIHR +   ++   P +E   + 
Sbjct: 81  FVTFSA-VLSGIKEVKEVMKEAQERRRYGQRTLVFIDEIHRFNKSQQDAFLPYVEKGDI- 138

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ-DRFGIPIRLNFYEIEDLKTIVQR 194
           +++G      S ++N    + + + ++V  + NPL  D   + ++    + E       R
Sbjct: 139 ILIGATTENPSFELN----SALLSRSKV-FVMNPLSPDDLMVLLKRALRDEE-------R 186

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIA 222
           G     + V DE   +IA+ + G  R+A
Sbjct: 187 GLGRFKVRVEDEQLYKIAVFANGDARVA 214


>gi|293399822|ref|ZP_06643968.1| ATPase, AAA family [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291306222|gb|EFE47465.1| ATPase, AAA family [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 419

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 62/118 (52%), Gaps = 5/118 (4%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ +EE  GQ        V  +   A+   +  ++F GPPG GKTTLA V+A EL + 
Sbjct: 9   MRPQKIEEIIGQKHLIGEGNVLRKCLAAKR--IFSMIFYGPPGTGKTTLAMVLANELELP 66

Query: 82  FRSTSGPVIAKAGDLAALLTN--LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           +R  +  V     +L  +     L    +L +DE+HRL+   +++L P +E+  + L+
Sbjct: 67  YRLFNA-VTGNKKELEQIFAEARLYPGLILIVDEVHRLNKDKQDLLLPHVENGNITLI 123


>gi|260597296|ref|YP_003209867.1| recombination factor protein RarA [Cronobacter turicensis z3032]
 gi|260216473|emb|CBA29618.1| Replication-associated recombination protein A [Cronobacter
           turicensis z3032]
          Length = 447

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 77/164 (46%), Gaps = 14/164 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  L ++ GQ    +  K    A +A    L  ++  GPPG GKTTLA+V+ R    +
Sbjct: 20  MRPENLAQYIGQQHLLAPGKPLPRAIEA--GHLHSMILWGPPGTGKTTLAEVIGRYANAD 77

Query: 82  FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
                  TSG   I +A + A    N   R +LF+DE+HR +   ++   P +ED  +  
Sbjct: 78  VERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 137

Query: 137 M--VGEGPS--ARSVKINLSRFTLIAATTRVGL---LTNPLQDR 173
           +    E PS    S  ++ +R  L+ + T   +   LT  + DR
Sbjct: 138 IGATTENPSFELNSALLSRARVYLLKSLTVEDIEQVLTQAMNDR 181


>gi|9106473|gb|AAF84262.1|AE003975_5 conserved hypothetical protein [Xylella fastidiosa 9a5c]
          Length = 429

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 59/117 (50%), Gaps = 13/117 (11%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV---LFVGPPGLGKTTLAQVVAREL 78
           +RPRTL E  GQ    +      + A  RA A  HV   +  GPPG GKTTL+ ++A+ +
Sbjct: 1   MRPRTLHEMVGQKRLLAP-----DRALHRAVASGHVHSMILWGPPGCGKTTLSLLLAQYI 55

Query: 79  GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
              F + S      P + +    AA   +   R VLF+DE+HR + + ++   P +E
Sbjct: 56  DAEFHAVSAVLSGLPEVRQILAEAAQRFSEGRRTVLFVDEVHRFNNMQQDAFLPHIE 112


>gi|325919437|ref|ZP_08181463.1| Recombination protein MgsA [Xanthomonas gardneri ATCC 19865]
 gi|325550103|gb|EGD20931.1| Recombination protein MgsA [Xanthomonas gardneri ATCC 19865]
          Length = 457

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 67/137 (48%), Gaps = 14/137 (10%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL+E  GQ   +   S L+  +E+ +  +     ++  GPPG GKTTLA ++A   
Sbjct: 29  MRPRTLDEMVGQKRLLAPDSALRRAVESGRVHS-----MILWGPPGCGKTTLALLLAHYS 83

Query: 79  GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
              F++ S      P + +    AA       R VLF+DE+HR +   ++   P +E   
Sbjct: 84  DAEFKAISAVLSGLPEVRQVLAEAAQRFASGRRTVLFVDEVHRFNKAQQDAFLPHIERGT 143

Query: 134 LDLMVGEGPSARSVKIN 150
           + L VG      S ++N
Sbjct: 144 I-LFVGATTENPSFELN 159


>gi|260426610|ref|ZP_05780589.1| recombination factor protein RarA [Citreicella sp. SE45]
 gi|260421102|gb|EEX14353.1| recombination factor protein RarA [Citreicella sp. SE45]
          Length = 437

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 89/200 (44%), Gaps = 32/200 (16%)

Query: 22  LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPR L+E  GQ +     + L + + +      AL  ++  GPPG+GKTT+A+++A   
Sbjct: 25  LRPRALDEVIGQRQLLGPDAPLGIMLASG-----ALSSLVLWGPPGVGKTTIARLLADAT 79

Query: 79  GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
            ++F   S      P + K  + A          +LF+DEIHR +   ++   P MED  
Sbjct: 80  DLHFVQISAIFTGVPELRKVFEAARHRRTNGQGTLLFVDEIHRFNKAQQDGFLPHMEDGT 139

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           + L+VG      S ++N       A  +R  +L             L    + DL+ + Q
Sbjct: 140 I-LLVGATTENPSFELN------AALLSRAQVLV------------LERLSLADLERLAQ 180

Query: 194 RGAKLTGLAVTDEAACEIAM 213
           R  K  G A+  + A   A+
Sbjct: 181 RAEKELGRALPLDGAAREAL 200


>gi|74003977|ref|XP_535865.2| PREDICTED: similar to Werner helicase interacting protein isoform 1
           [Canis familiaris]
          Length = 427

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 74/151 (49%), Gaps = 21/151 (13%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75
           +RP TL+++ GQ  A      L+  +E  +     +  ++  GPPG GKTTLA ++A   
Sbjct: 11  MRPDTLQDYIGQSRAVGQDTLLRSLLETTE-----IPSLILWGPPGCGKTTLAHIIANNS 65

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPA 128
           ++  + F + S    AK  D+  ++   ++       + +LFIDEIHR +   ++   P 
Sbjct: 66  KKHSIRFVTLSA-TNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPH 124

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLI 157
           +E   + L+    E PS +     LSR  +I
Sbjct: 125 VECGTITLIGATTENPSFQVNAALLSRCRVI 155


>gi|33152375|ref|NP_873728.1| recombination factor protein RarA [Haemophilus ducreyi 35000HP]
 gi|33148598|gb|AAP96117.1| conserved hypothetical protein [Haemophilus ducreyi 35000HP]
          Length = 446

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 22/168 (13%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPR L ++ GQ         L+  IEA  A +     ++  GPPG GKTTLA+++A+  
Sbjct: 19  MRPRCLADYIGQSHLLGKDKPLRRAIEAGYAHS-----MILWGPPGTGKTTLAEIIAQHF 73

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
                     TSG   I +A + A        + +LF+DE+HR +   ++   P +ED  
Sbjct: 74  DAEVERLSAVTSGVKEIREAIEQAKYNRQAGRKTLLFVDEVHRFNKSQQDAFLPYIEDGT 133

Query: 134 LDLMVGEGPSARSVKIN---LSRFTL-----IAATTRVGLLTNPLQDR 173
           + + +G      S ++N   LSR  +     + A     +L N LQD+
Sbjct: 134 V-IFIGATTENPSFELNNALLSRARIYLLKPLQADEIEQILQNALQDK 180


>gi|8886769|gb|AAF80563.1|AF218313_1 putative helicase RUVBL [Homo sapiens]
 gi|55661736|emb|CAH73665.1| Werner helicase interacting protein 1 [Homo sapiens]
          Length = 445

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 75/151 (49%), Gaps = 21/151 (13%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75
           +RP TL+++ GQ +A      L+  +E  +     +  ++  GPPG GKTTLA ++A   
Sbjct: 11  MRPDTLQDYFGQSKAVGQDTLLRSLLETNE-----IPSLILWGPPGCGKTTLAHIIASNS 65

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPA 128
           ++  + F + S    AK  D+  ++   ++       + +LFIDEIHR +   ++   P 
Sbjct: 66  KKHSIRFVTLSA-TNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPH 124

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLI 157
           +E   + L+    E PS +     LSR  +I
Sbjct: 125 VECGTITLIGATTENPSFQVNAALLSRCRVI 155


>gi|304407556|ref|ZP_07389208.1| AAA ATPase central domain protein [Paenibacillus curdlanolyticus
           YK9]
 gi|304343507|gb|EFM09349.1| AAA ATPase central domain protein [Paenibacillus curdlanolyticus
           YK9]
          Length = 438

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 59/118 (50%), Gaps = 14/118 (11%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP TL+++ GQ       K+   A +   + +  +L  GPPG GKTTLA ++++    +
Sbjct: 21  MRPETLDDYIGQEHIVGAGKLLRRAIEG--DRISSILLYGPPGCGKTTLAHIISKRTEAD 78

Query: 82  FRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           F   +           VI +A    A+      + +LF+DE+HR +   ++ L PA+E
Sbjct: 79  FVKLNAVDASVKDVRDVIDRAKTAKAMYGR---KTILFLDEVHRFNSSRQDALLPAVE 133


>gi|296473933|gb|DAA16048.1| Werner helicase interacting protein 1 [Bos taurus]
          Length = 494

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 75/151 (49%), Gaps = 21/151 (13%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75
           +RP  L++F GQ  A      L+  +EA++     +  ++  GPPG GKTTLA ++A   
Sbjct: 204 MRPDALQDFVGQGRAVGPETLLRSLLEASE-----VPSLILWGPPGCGKTTLAHIIANNS 258

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPA 128
           ++  + F + S    AK  D+  ++   ++       + +LFIDEIHR +   ++   P 
Sbjct: 259 KKHSIRFVTLSA-TSAKTTDVRDVIKQAQNEKRFFKRKTILFIDEIHRFNKSQQDTFLPH 317

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLI 157
           +E   + L+    E PS +     LSR  +I
Sbjct: 318 VECGTITLIGATTENPSFQVNAALLSRCRVI 348


>gi|322374037|ref|ZP_08048571.1| ATPase, AAA family [Streptococcus sp. C150]
 gi|321277003|gb|EFX54074.1| ATPase, AAA family [Streptococcus sp. C150]
          Length = 422

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 61/123 (49%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRT+ E  GQ       K+     +A    L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPRTISEVIGQKHLVGKGKIIRRMVEA--NMLSSMILYGPPGIGKTSIASAIAGTTKFA 66

Query: 82  FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +  V +K       + A     L    VL +DEIHRL    ++ L P +E+ ++ +
Sbjct: 67  FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKAKQDFLLPLLENGKI-I 121

Query: 137 MVG 139
           M+G
Sbjct: 122 MIG 124


>gi|145637468|ref|ZP_01793126.1| predicted ATPase [Haemophilus influenzae PittHH]
 gi|145269274|gb|EDK09219.1| predicted ATPase [Haemophilus influenzae PittHH]
          Length = 446

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 76/151 (50%), Gaps = 14/151 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP +LE++ GQ       K   +A +A    +  ++  GPPG GKTTLA+++A+ +   
Sbjct: 20  MRPTSLEQYFGQSHLIGEGKPLRKAIQA--GHIHSMILWGPPGTGKTTLAEIIAQRINAE 77

Query: 82  FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
                  TSG   I +A D A      + + +LF+DE+HR +   ++   P +ED  + +
Sbjct: 78  VERISAVTSGIKEIREAIDRAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIEDGSV-I 136

Query: 137 MVGEGPSARSVKIN---LSR---FTLIAATT 161
            +G      S ++N   LSR   + L + TT
Sbjct: 137 FIGATTENPSFELNNALLSRARVYVLKSLTT 167


>gi|308174454|ref|YP_003921159.1| helicase associated protein [Bacillus amyloliquefaciens DSM 7]
 gi|307607318|emb|CBI43689.1| putative helicase associated protein (ATPase, AAA family) [Bacillus
           amyloliquefaciens DSM 7]
 gi|328554373|gb|AEB24865.1| recombination factor protein RarA [Bacillus amyloliquefaciens
           TA208]
 gi|328912777|gb|AEB64373.1| putative helicase associated protein (ATPase, AAA family) [Bacillus
           amyloliquefaciens LL3]
          Length = 422

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 57/112 (50%), Gaps = 5/112 (4%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  +E+  GQ       K+       RA+ L  ++  GPPG+GKT++A  +A    + 
Sbjct: 8   MRPANIEDIIGQEHLVKEDKII--GRMVRAKHLSSMILYGPPGIGKTSIATAIAGSTSIA 65

Query: 82  FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
           FR  +  VI    D+  ++    +  + +L +DE+HRL    ++ L P +E+
Sbjct: 66  FRKLNA-VIHNKKDMEIVVQEAKMSGQVILILDEVHRLDKGKQDFLLPYLEN 116


>gi|291287827|ref|YP_003504643.1| AAA ATPase central domain protein [Denitrovibrio acetiphilus DSM
           12809]
 gi|290884987|gb|ADD68687.1| AAA ATPase central domain protein [Denitrovibrio acetiphilus DSM
           12809]
          Length = 426

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 62/121 (51%), Gaps = 7/121 (5%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPR  ++  GQ        VF +  +      D V+ VGPPG GKTTLA+++ + L + 
Sbjct: 7   LRPRAFDDIAGQKHLIGVDSVFRKMVEDGG--FDSVVLVGPPGTGKTTLAEIIGKHLNMP 64

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRD---VLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138
           + S      A +GDL  ++ +        ++F+DE+HR +   +++L   M D  L  ++
Sbjct: 65  YFSLHA-ATAGSGDLKQIMESARHAGKTVLVFVDELHRFN-KTQQVLLLNMIDSGLAKLI 122

Query: 139 G 139
           G
Sbjct: 123 G 123


>gi|254451290|ref|ZP_05064727.1| ATPase, AAA family [Octadecabacter antarcticus 238]
 gi|198265696|gb|EDY89966.1| ATPase, AAA family [Octadecabacter antarcticus 238]
          Length = 435

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 71/137 (51%), Gaps = 14/137 (10%)

Query: 22  LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP++L+E  GQ +     + L V + +    +     ++F GPPG+GKTT+A+++A E 
Sbjct: 23  LRPKSLDEVIGQEQVLGPDAPLGVMLSSGSLSS-----LIFWGPPGVGKTTIARLLADET 77

Query: 79  GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
            ++F   S      P + K  + A +        +LF+DEIHR +   ++   P MED  
Sbjct: 78  DLHFIQISAIFTGMPDLRKVFEAAKMRRANGKGTLLFVDEIHRFNKAQQDGFLPHMEDGT 137

Query: 134 LDLMVGEGPSARSVKIN 150
           + L+VG      S ++N
Sbjct: 138 I-LLVGATTENPSFELN 153


>gi|163752933|ref|ZP_02160057.1| ATPase, AAA family protein [Kordia algicida OT-1]
 gi|161326665|gb|EDP97990.1| ATPase, AAA family protein [Kordia algicida OT-1]
          Length = 431

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 64/143 (44%), Gaps = 15/143 (10%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+TLE++  Q        V     + R   +  +L  GPPG GKTTLA ++A      
Sbjct: 15  IRPKTLEDYISQEHLVGETGVLTR--QIRQGIIPSLLLWGPPGTGKTTLANIIATTSDRP 72

Query: 82  FRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           F + S           VI +A     L T      +LFIDEIHR S   ++ L  A+E  
Sbjct: 73  FYTLSAISSGVKEVREVIQRAKQDNGLFTT--KNPILFIDEIHRFSKSQQDSLLGAVEKG 130

Query: 133 QLDLM--VGEGPSARSVKINLSR 153
            + L+    E PS   +   LSR
Sbjct: 131 WVTLIGATTENPSFEVIPALLSR 153


>gi|154686894|ref|YP_001422055.1| recombination factor protein RarA [Bacillus amyloliquefaciens
           FZB42]
 gi|154352745|gb|ABS74824.1| YrvN [Bacillus amyloliquefaciens FZB42]
          Length = 422

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 57/112 (50%), Gaps = 5/112 (4%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  +E+  GQ       K+       RA+ L  ++  GPPG+GKT++A  +A    + 
Sbjct: 8   MRPANIEDIIGQEHLVKEDKII--GRMVRAKHLSSMILYGPPGIGKTSIATAIAGSTSIA 65

Query: 82  FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
           FR  +  VI    D+  ++    +  + +L +DE+HRL    ++ L P +E+
Sbjct: 66  FRKLNA-VIHNKKDMEIVVQEAKMSGQVILILDEVHRLDKGKQDFLLPYLEN 116


>gi|325684423|gb|EGD26591.1| ATPase [Lactobacillus delbrueckii subsp. lactis DSM 20072]
          Length = 434

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 63/126 (50%), Gaps = 18/126 (14%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+++++  GQ       K+     +AR   L  ++  GPPG+GKT++A  +A      
Sbjct: 8   MRPQSIDQVVGQQHLVGPKKIIRRMVEARQ--LSSMILYGPPGIGKTSIASAIAGSSRYA 65

Query: 82  FRSTSGPV--------IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           FR  +           +A  G ++  +       VL +DEIHRL+ + ++ L P +E  Q
Sbjct: 66  FRQLNAATDGQKELSQVAAEGKMSGTV-------VLLLDEIHRLNKVKQDFLLPLLESGQ 118

Query: 134 LDLMVG 139
           + +M+G
Sbjct: 119 V-IMIG 123


>gi|313123418|ref|YP_004033677.1| recombination factor protein rara [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312279981|gb|ADQ60700.1| Recombination factor protein RarA [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 434

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 63/126 (50%), Gaps = 18/126 (14%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+++++  GQ       K+     +AR   L  ++  GPPG+GKT++A  +A      
Sbjct: 8   MRPQSIDQVVGQQHLVGPKKIIRRMVEARQ--LSSMILYGPPGIGKTSIASAIAGSSKYA 65

Query: 82  FRSTSGPV--------IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           FR  +           +A  G ++  +       VL +DEIHRL+ + ++ L P +E  Q
Sbjct: 66  FRQLNAATDGQKELSQVAAEGRMSGTV-------VLLLDEIHRLNKVKQDFLLPLLESGQ 118

Query: 134 LDLMVG 139
           + +M+G
Sbjct: 119 V-IMIG 123


>gi|304314451|ref|YP_003849598.1| replication factor C, large subunit [Methanothermobacter
           marburgensis str. Marburg]
 gi|302587910|gb|ADL58285.1| replication factor C, large subunit [Methanothermobacter
           marburgensis str. Marburg]
          Length = 470

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 53/100 (53%), Gaps = 8/100 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR----- 76
            RPRT EE  G  +A + +K +I   KA  E    +L VGPPG GKTT+A ++ R     
Sbjct: 7   YRPRTFEEVAGNQKAIAEIKKWISGWKA-GEPQPPLLLVGPPGTGKTTMAHIIGREFSDT 65

Query: 77  -ELGVNFRSTSGPVIAKAGDLAALLTNL-EDRDVLFIDEI 114
            EL  + + +   ++  AG+ +A  +    D  ++ +DE+
Sbjct: 66  LELNASDKRSQDAIMRTAGEASATRSLFNHDLKLIILDEV 105


>gi|229847091|ref|ZP_04467196.1| recombination factor protein RarA [Haemophilus influenzae 7P49H1]
 gi|229809920|gb|EEP45641.1| recombination factor protein RarA [Haemophilus influenzae 7P49H1]
          Length = 446

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 76/151 (50%), Gaps = 14/151 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP +LE++ GQ       K   +A +A    +  ++  GPPG GKTTLA+++A+ +   
Sbjct: 20  MRPTSLEQYFGQSHLIGEGKPLRKAIQA--GHIHSMILWGPPGTGKTTLAEIIAQRINAE 77

Query: 82  FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
                  TSG   I +A D A      + + +LF+DE+HR +   ++   P +ED  + +
Sbjct: 78  VERISAVTSGIKEIREAIDRAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIEDGSV-I 136

Query: 137 MVGEGPSARSVKIN---LSR---FTLIAATT 161
            +G      S ++N   LSR   + L + TT
Sbjct: 137 FIGATTENPSFELNNALLSRARVYVLKSLTT 167


>gi|213963197|ref|ZP_03391454.1| ATPase, AAA family [Capnocytophaga sputigena Capno]
 gi|213954059|gb|EEB65384.1| ATPase, AAA family [Capnocytophaga sputigena Capno]
          Length = 425

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 68/146 (46%), Gaps = 21/146 (14%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP +L ++ GQ   V A   L+  IE        L  ++F GPPG GKTTLA ++A + 
Sbjct: 8   MRPTSLAQYVGQEHLVGAQGALRQQIERG-----LLPSLIFWGPPGTGKTTLANIIAHQS 62

Query: 79  GVNFRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
              F + S           VI ++     L T      ++FIDEIHR +   ++ L  A+
Sbjct: 63  NRAFYTLSAISSGIKDVREVIDQSKQSGGLFTT--QNPIVFIDEIHRFNKTQQDSLLQAV 120

Query: 130 EDFQLDLM--VGEGPSARSVKINLSR 153
           E   + L+    E PS   +   LSR
Sbjct: 121 EKGWITLIGATTENPSFEVIPALLSR 146


>gi|154757528|gb|AAI51634.1| WRNIP1 protein [Bos taurus]
          Length = 545

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 75/151 (49%), Gaps = 21/151 (13%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75
           +RP  L++F GQ  A      L+  +EA++     +  ++  GPPG GKTTLA ++A   
Sbjct: 111 MRPDALQDFVGQGRAVGPETLLRSLLEASE-----VPSLILWGPPGCGKTTLAHIIANNS 165

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPA 128
           ++  + F + S    AK  D+  ++   ++       + +LFIDEIHR +   ++   P 
Sbjct: 166 KKHSIRFVTLSA-TSAKTTDVRDVIKQAQNEKRFFKRKTILFIDEIHRFNKSQQDTFLPH 224

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLI 157
           +E   + L+    E PS +     LSR  +I
Sbjct: 225 VECGTITLIGATTENPSFQVNAALLSRCRVI 255


>gi|156718142|ref|NP_001096576.1| ATPase WRNIP1 [Bos taurus]
 gi|151553722|gb|AAI50137.1| Werner helicase interacting protein 1 [Bos taurus]
          Length = 638

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 75/151 (49%), Gaps = 21/151 (13%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75
           +RP  L++F GQ  A      L+  +EA++     +  ++  GPPG GKTTLA ++A   
Sbjct: 204 MRPDALQDFVGQGRAVGPETLLRSLLEASE-----VPSLILWGPPGCGKTTLAHIIANNS 258

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPA 128
           ++  + F + S    AK  D+  ++   ++       + +LFIDEIHR +   ++   P 
Sbjct: 259 KKHSIRFVTLSA-TSAKTTDVRDVIKQAQNEKRFFKRKTILFIDEIHRFNKSQQDTFLPH 317

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLI 157
           +E   + L+    E PS +     LSR  +I
Sbjct: 318 VECGTITLIGATTENPSFQVNAALLSRCRVI 348


>gi|332246193|ref|XP_003272237.1| PREDICTED: ATPase WRNIP1 isoform 2 [Nomascus leucogenys]
          Length = 592

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 74/151 (49%), Gaps = 21/151 (13%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75
           +RP TL+++ GQ  A      L+  +E  +     +  ++  GPPG GKTTLA ++A   
Sbjct: 204 MRPDTLQDYFGQSRAVGQDTLLRSLLETNE-----IPSLILWGPPGCGKTTLAHIIANNS 258

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPA 128
           ++  + F + S    AK  D+  ++   ++       + +LFIDEIHR +   ++   P 
Sbjct: 259 KKHSIRFVTLSA-TNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPH 317

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLI 157
           +E   + L+    E PS +     LSR  +I
Sbjct: 318 VECGTITLIGATTENPSFQVNAALLSRCRVI 348


>gi|319792075|ref|YP_004153715.1| aaa atpase central domain protein [Variovorax paradoxus EPS]
 gi|315594538|gb|ADU35604.1| AAA ATPase central domain protein [Variovorax paradoxus EPS]
          Length = 430

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 67/255 (26%), Positives = 107/255 (41%), Gaps = 53/255 (20%)

Query: 22  LRPRTLEEFTGQVEACS---NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL E  GQ        +L++  E+ +  +      +  GPPG GKTT+A+++A   
Sbjct: 13  LRPKTLGEVIGQQHLLGPGMSLRIAFESGQPHS-----CILWGPPGTGKTTIARLMADAF 67

Query: 79  GVNFRSTSGPVIAKAGDL-------AALLTNLED-RDVLFIDEIHRLSIIVEEILYPAME 130
              F S S  V+    D+        A    LE  R ++F+DE+HR +   ++   P +E
Sbjct: 68  DAQFLSISA-VLGGVKDIREAVERATAARDGLEQRRTIVFVDEVHRFNKSQQDAFLPHVE 126

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP-LQDRFGIPIRLNFYEIE--- 186
                                  FT I ATT      NP  +    +  R   Y ++   
Sbjct: 127 S--------------------GLFTFIGATTE-----NPSFEVNSALLSRAAVYVLQPLT 161

Query: 187 --DLKTIVQRGAKLTGLAVTDEAACE-IAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
             DL+ IV +   +  +   DE A + +   + G  R   RLL  +   A  A A+ +  
Sbjct: 162 EGDLEQIVAKAQSIQAVPAIDETAIDRLVAYADGDAR---RLLNTLETLAVAARAEKLA- 217

Query: 244 EIADAALLRLAIDKM 258
            I+D  LLR+  ++M
Sbjct: 218 NISDEWLLRVLGERM 232


>gi|183598337|ref|ZP_02959830.1| hypothetical protein PROSTU_01729 [Providencia stuartii ATCC 25827]
 gi|188020513|gb|EDU58553.1| hypothetical protein PROSTU_01729 [Providencia stuartii ATCC 25827]
          Length = 447

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 70/147 (47%), Gaps = 11/147 (7%)

Query: 6   GLLSRNVSQEDAD--ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           G LS + SQ +     + +RP  LE++ GQ    +  K    A KA    L  ++  GPP
Sbjct: 2   GNLSLDFSQNEFQPLAARMRPEVLEQYIGQKHLLAEGKPLPRAIKA--GHLHSMILWGPP 59

Query: 64  GLGKTTLAQVVARELGVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
           G GKTTLA+++      +       TSG   I +A + A    +   R +LF+DE+HR +
Sbjct: 60  GTGKTTLAEIIGHYAQADIERISAVTSGIKEIREAIEKARQNRDAGRRTILFVDEVHRFN 119

Query: 119 IIVEEILYPAMEDFQLDLM--VGEGPS 143
              ++   P +ED  +  +    E PS
Sbjct: 120 KSQQDAFLPHIEDGTITFIGATTENPS 146


>gi|56551017|ref|YP_161856.1| recombination factor protein RarA [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|56542591|gb|AAV88745.1| AAA ATPase central domain protein [Zymomonas mobilis subsp. mobilis
           ZM4]
          Length = 449

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 63/135 (46%), Gaps = 13/135 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           ADI  LRP+ L +  GQ        +        A  L  ++  GPPG GKT++AQ++A 
Sbjct: 28  ADI--LRPKHLSDVIGQAHVTGENGII--GRMVAAGRLSSLILWGPPGTGKTSIAQLLAE 83

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130
            +G+ F   S  + +   DL  +    E       + +LFIDEIHR +   ++   P +E
Sbjct: 84  SVGMRFEMVSA-IFSGVADLKKIFLKAEHHRQQGRQTLLFIDEIHRFNKGQQDSFLPYIE 142

Query: 131 D--FQLDLMVGEGPS 143
           +  F L     E PS
Sbjct: 143 NGTFVLVGATTENPS 157


>gi|109069429|ref|XP_001090565.1| PREDICTED: ATPase WRNIP1 isoform 2 [Macaca mulatta]
          Length = 614

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 74/151 (49%), Gaps = 21/151 (13%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75
           +RP TL+++ GQ  A      L+  +E  +     +  ++  GPPG GKTTLA ++A   
Sbjct: 231 MRPDTLQDYFGQSRAVGQDTLLRSLLETNE-----IPSLILWGPPGCGKTTLAHIIANNS 285

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPA 128
           ++  + F + S    AK  D+  ++   ++       + +LFIDEIHR +   ++   P 
Sbjct: 286 KKHSIRFVTLSA-TNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPH 344

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLI 157
           +E   + L+    E PS +     LSR  +I
Sbjct: 345 VECGTITLIGATTENPSFQVNAALLSRCRVI 375


>gi|294636938|ref|ZP_06715264.1| replication-associated recombination protein A [Edwardsiella tarda
           ATCC 23685]
 gi|291089856|gb|EFE22417.1| replication-associated recombination protein A [Edwardsiella tarda
           ATCC 23685]
          Length = 447

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 67/129 (51%), Gaps = 9/129 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR----E 77
           +RP+TLE++ GQ    +  K    A  A    L  ++  GPPG GKTTLA+++AR    E
Sbjct: 20  MRPQTLEQYIGQRHLLAAGKPLPRAILA--GHLHSMILWGPPGTGKTTLAELIARYGHAE 77

Query: 78  LGVNFRSTSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           +      TSG   I +A + A    ++  R +LF+DE+HR +   ++   P +ED  +  
Sbjct: 78  VERISAVTSGIKEIREAIERARQNRDVGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 137

Query: 137 M--VGEGPS 143
           +    E PS
Sbjct: 138 IGATTENPS 146


>gi|260753314|ref|YP_003226207.1| recombination factor protein RarA [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
 gi|258552677|gb|ACV75623.1| AAA ATPase central domain protein [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
          Length = 449

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 63/135 (46%), Gaps = 13/135 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           ADI  LRP+ L +  GQ        +        A  L  ++  GPPG GKT++AQ++A 
Sbjct: 28  ADI--LRPKHLSDVIGQAHVTGENGII--GRMVAAGRLSSLILWGPPGTGKTSIAQLLAE 83

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130
            +G+ F   S  + +   DL  +    E       + +LFIDEIHR +   ++   P +E
Sbjct: 84  SVGMRFEMVSA-IFSGVADLKKIFLKAEHHRQQGRQTLLFIDEIHRFNKGQQDSFLPYIE 142

Query: 131 D--FQLDLMVGEGPS 143
           +  F L     E PS
Sbjct: 143 NGTFVLVGATTENPS 157


>gi|332246191|ref|XP_003272236.1| PREDICTED: ATPase WRNIP1 isoform 1 [Nomascus leucogenys]
          Length = 638

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 74/151 (49%), Gaps = 21/151 (13%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75
           +RP TL+++ GQ  A      L+  +E  +     +  ++  GPPG GKTTLA ++A   
Sbjct: 204 MRPDTLQDYFGQSRAVGQDTLLRSLLETNE-----IPSLILWGPPGCGKTTLAHIIANNS 258

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPA 128
           ++  + F + S    AK  D+  ++   ++       + +LFIDEIHR +   ++   P 
Sbjct: 259 KKHSIRFVTLSA-TNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPH 317

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLI 157
           +E   + L+    E PS +     LSR  +I
Sbjct: 318 VECGTITLIGATTENPSFQVNAALLSRCRVI 348


>gi|226306471|ref|YP_002766431.1| ATPase [Rhodococcus erythropolis PR4]
 gi|226185588|dbj|BAH33692.1| putative ATPase [Rhodococcus erythropolis PR4]
          Length = 479

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/145 (35%), Positives = 75/145 (51%), Gaps = 21/145 (14%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP TL E  GQ   +   + L+  +E + A +     VL  GPPG GKTTLA +++   
Sbjct: 59  MRPLTLGEVVGQQHLLGPGAPLRRMVEGSGAAS-----VLLYGPPGTGKTTLASLISGAT 113

Query: 79  GVNFRSTSGPVIAKAGDLAAL-------LTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
           G  F + S  + A   ++  +       L N E + VLFIDE+HR S   ++ L  A+E+
Sbjct: 114 GRRFEALSA-LSAGVKEVRGVIELARRRLLNGE-QTVLFIDEVHRFSKTQQDALLAAVEN 171

Query: 132 FQLDLMVG---EGPSARSVKINLSR 153
            ++ L+VG   E PS   V   LSR
Sbjct: 172 -RIVLLVGATTENPSFSVVSALLSR 195


>gi|193216561|ref|YP_001999803.1| recombination factor protein RarA [Mycoplasma arthritidis 158L3-1]
 gi|193001884|gb|ACF07099.1| ATPase, related to the helicase subunit of the Holliday junction
           resolvase [Mycoplasma arthritidis 158L3-1]
          Length = 402

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 101/219 (46%), Gaps = 40/219 (18%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           +++N++Q+       RP  L++F      C++ + F+       +     +F G PG GK
Sbjct: 1   MNKNLAQK------TRPIALDDFV-----CNDSQRFLFEKIIANDDFRSFIFYGKPGTGK 49

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127
           TT++ ++A  L V+F   +   I K  DL A    L+   +L IDEIHRL+   ++IL P
Sbjct: 50  TTISYILASSLKVSFDYFNA-AIEKKEDLVA---KLKLNKILIIDEIHRLNKDKQDILLP 105

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL-TNP-LQDRFGIPIRLNFYEI 185
            +E+   DL+                 T+ A TT       NP L+ R  I + +    I
Sbjct: 106 YIEN---DLI-----------------TIYATTTENPYFKVNPALRSRCAI-VEIKNPSI 144

Query: 186 EDLKTIVQRGAKLTGL--AVTDEAACEIAMRSRGTPRIA 222
           +DL   +++ A    L   ++DE    IA +S G  R A
Sbjct: 145 DDLSKQLKKIALNNQLDSNLSDEIYHFIASQSNGDYRSA 183


>gi|156934613|ref|YP_001438529.1| recombination factor protein RarA [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156532867|gb|ABU77693.1| hypothetical protein ESA_02447 [Cronobacter sakazakii ATCC BAA-894]
          Length = 428

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 62/129 (48%), Gaps = 9/129 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  L ++ GQ    +  K    A +A    L  ++  GPPG GKTTLA+V+ R    +
Sbjct: 1   MRPENLAQYIGQQHLLAPGKPLPRAIEA--GHLHSMILWGPPGTGKTTLAEVIGRYANAD 58

Query: 82  FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
                  TSG   I +A + A    N   R +LF+DE+HR +   ++   P +ED  +  
Sbjct: 59  VERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 118

Query: 137 M--VGEGPS 143
           +    E PS
Sbjct: 119 IGATTENPS 127


>gi|296284469|ref|ZP_06862467.1| recombination factor protein RarA [Citromicrobium bathyomarinum
           JL354]
          Length = 440

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 64/127 (50%), Gaps = 16/127 (12%)

Query: 14  QEDADIS-LLRPRTLEEFTGQVEACS---NLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           +EDA ++  LRPRTL E  GQ        ++   + A +     L  ++  GPPG GKTT
Sbjct: 21  REDAPLADRLRPRTLSEVVGQEHLTGPEGSIGRMVAAGR-----LSSMILWGPPGTGKTT 75

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEE 123
           +A+++A  +G+ + + S  V +   DL       E       + +LF+DEIHR +   ++
Sbjct: 76  IARLLADSVGMRYAAVSA-VFSGVADLKKAFAEAETAAKAGQKTLLFVDEIHRFNRAQQD 134

Query: 124 ILYPAME 130
              P +E
Sbjct: 135 GFLPFVE 141


>gi|228999186|ref|ZP_04158768.1| hypothetical protein bmyco0003_37430 [Bacillus mycoides Rock3-17]
 gi|229006734|ref|ZP_04164368.1| hypothetical protein bmyco0002_36360 [Bacillus mycoides Rock1-4]
 gi|228754595|gb|EEM04006.1| hypothetical protein bmyco0002_36360 [Bacillus mycoides Rock1-4]
 gi|228760803|gb|EEM09767.1| hypothetical protein bmyco0003_37430 [Bacillus mycoides Rock3-17]
          Length = 428

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 83/330 (25%), Positives = 128/330 (38%), Gaps = 65/330 (19%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  ++E  GQ       K+     +A       ++  GPPG GKT++A  +A   G  
Sbjct: 9   MRPTNIKEIIGQEHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAIAGSTGTP 66

Query: 82  FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
           FR  +  V     D+  ++    +    VL +DE+HRL    ++ L P +E   L     
Sbjct: 67  FRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLL----- 120

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEIE---------DLK 189
                          TLI ATT     +NP       I  R   +E+           LK
Sbjct: 121 ---------------TLIGATT-----SNPFHAINSAIRSRCQIFELHALTENDILIGLK 160

Query: 190 TIVQRGAKLTG---LAVTDEAACEIAMRSRGTPRIAGRLLRR--VRDFAEVAHAKTITRE 244
             ++   K  G   + VTDEA    A  S G  R A   L    +  F     +  IT E
Sbjct: 161 RALEDKEKGLGEYHVTVTDEAMRHFANASGGDMRSAYNALELAVLSSFTTDDQSTEITLE 220

Query: 245 IADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           IA+  L + +   DK G    D+  L+   ++  G  V              A+  L   
Sbjct: 221 IAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDVNA------------ALHYLAR- 265

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
            +I+ G +Q    GR L+ +A++ +G+  P
Sbjct: 266 -LIEAGDLQSI--GRRLLIMAYEDIGLASP 292


>gi|256820268|ref|YP_003141547.1| recombination factor protein RarA [Capnocytophaga ochracea DSM
           7271]
 gi|256581851|gb|ACU92986.1| AAA ATPase central domain protein [Capnocytophaga ochracea DSM
           7271]
          Length = 426

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 68/146 (46%), Gaps = 21/146 (14%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP +L ++ GQ   V A   L+  IE        L  ++F GPPG GKTTLA ++A + 
Sbjct: 9   MRPTSLAQYVGQEHLVGAQGALRQQIERG-----LLPSLIFWGPPGTGKTTLANIIAHQS 63

Query: 79  GVNFRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
              F + S           VI ++     L T      ++FIDEIHR +   ++ L  A+
Sbjct: 64  NRAFYTLSAISSGIKEVREVIDQSKQSGGLFTT--QNPIVFIDEIHRFNKTQQDSLLQAV 121

Query: 130 EDFQLDLM--VGEGPSARSVKINLSR 153
           E   + L+    E PS   +   LSR
Sbjct: 122 EKGWITLIGATTENPSFEVIPALLSR 147


>gi|325578148|ref|ZP_08148283.1| replication-associated recombination protein A [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325159884|gb|EGC72013.1| replication-associated recombination protein A [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 446

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 56/115 (48%), Gaps = 7/115 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  LE++ GQ       K   +A +A    +  ++  GPPG GKTTLA+++A  +   
Sbjct: 20  MRPTNLEQYYGQTHLIGEGKPLRKAIQAGH--VHSMILWGPPGTGKTTLAEIIAHRINAE 77

Query: 82  FRS----TSGPVIAKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMED 131
                  TSG    +     A    L DR  +LF+DE+HR +   ++   P +ED
Sbjct: 78  VERISAVTSGVKEIRESIERAKQNRLADRQTILFVDEVHRFNKSQQDAFLPHIED 132


>gi|118591151|ref|ZP_01548550.1| AAA ATPase, central region [Stappia aggregata IAM 12614]
 gi|118436227|gb|EAV42869.1| AAA ATPase, central region [Stappia aggregata IAM 12614]
          Length = 434

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 59/130 (45%), Gaps = 11/130 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  L +  GQ              K R   L  ++F GPPG GKTT+A+++A E  + 
Sbjct: 22  MRPTRLADVVGQDHLLGPEGTLSRMLKTRT--LGSLIFWGPPGTGKTTIARLLANETDLA 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F   S  + +   DL  +      R       +LF+DEIHR +   ++   P MED  + 
Sbjct: 80  FEQISA-IFSGVADLKKVFEAARARRMSGRATLLFVDEIHRFNRAQQDSFLPVMEDGTIT 138

Query: 136 LM--VGEGPS 143
           L+    E PS
Sbjct: 139 LVGATTENPS 148


>gi|229493645|ref|ZP_04387430.1| recombination factor protein RarA [Rhodococcus erythropolis SK121]
 gi|229319606|gb|EEN85442.1| recombination factor protein RarA [Rhodococcus erythropolis SK121]
          Length = 470

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/145 (35%), Positives = 75/145 (51%), Gaps = 21/145 (14%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP TL E  GQ   +   + L+  +E + A +     VL  GPPG GKTTLA +++   
Sbjct: 50  MRPLTLGEVVGQQHLLGPGAPLRRMVEGSGAAS-----VLLYGPPGTGKTTLASLISGAT 104

Query: 79  GVNFRSTSGPVIAKAGDLAAL-------LTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
           G  F + S  + A   ++  +       L N E + VLFIDE+HR S   ++ L  A+E+
Sbjct: 105 GRRFEALSA-LSAGVKEVRGVIELARRRLLNGE-QTVLFIDEVHRFSKTQQDALLAAVEN 162

Query: 132 FQLDLMVG---EGPSARSVKINLSR 153
            ++ L+VG   E PS   V   LSR
Sbjct: 163 -RIVLLVGATTENPSFSVVSALLSR 186


>gi|332246195|ref|XP_003272238.1| PREDICTED: ATPase WRNIP1 isoform 3 [Nomascus leucogenys]
          Length = 587

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 74/151 (49%), Gaps = 21/151 (13%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75
           +RP TL+++ GQ  A      L+  +E  +     +  ++  GPPG GKTTLA ++A   
Sbjct: 204 MRPDTLQDYFGQSRAVGQDTLLRSLLETNE-----IPSLILWGPPGCGKTTLAHIIANNS 258

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPA 128
           ++  + F + S    AK  D+  ++   ++       + +LFIDEIHR +   ++   P 
Sbjct: 259 KKHSIRFVTLSA-TNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPH 317

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLI 157
           +E   + L+    E PS +     LSR  +I
Sbjct: 318 VECGTITLIGATTENPSFQVNAALLSRCRVI 348


>gi|289666013|ref|ZP_06487594.1| recombination factor protein RarA [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 436

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 67/137 (48%), Gaps = 14/137 (10%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL+E  GQ   +   S L+  +E+ +  +     ++  GPPG GKTTLA ++A   
Sbjct: 8   MRPRTLDEMVGQKRLLAPDSALRRAVESGRVHS-----MILWGPPGCGKTTLALLLAHYA 62

Query: 79  GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
              F++ S      P + +    AA       R VLF+DE+HR +   ++   P +E   
Sbjct: 63  DAEFKAISAVLSGLPEVRQVLAEAAQRFAGGRRTVLFVDEVHRFNKAQQDAFLPHIERGT 122

Query: 134 LDLMVGEGPSARSVKIN 150
           + L VG      S ++N
Sbjct: 123 I-LFVGATTENPSFELN 138


>gi|145635701|ref|ZP_01791396.1| predicted ATPase [Haemophilus influenzae PittAA]
 gi|145267024|gb|EDK07033.1| predicted ATPase [Haemophilus influenzae PittAA]
          Length = 446

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 58/115 (50%), Gaps = 7/115 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP +LE++ GQ       K   +A +A    +  ++  GPPG GKTTLA+++A+ +   
Sbjct: 20  MRPTSLEQYFGQSHLIGEGKPLRKAIQAGH--IHSMILWGPPGTGKTTLAEIIAQRINAE 77

Query: 82  FRS----TSGPVIAKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMED 131
                  TSG    +     A    L DR  +LF+DE+HR +   ++   P +ED
Sbjct: 78  VERISAVTSGIKEIREAIERAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIED 132


>gi|206561377|ref|YP_002232142.1| recombination factor protein RarA [Burkholderia cenocepacia J2315]
 gi|198037419|emb|CAR53354.1| putative ATPase protein [Burkholderia cenocepacia J2315]
          Length = 441

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 111/257 (43%), Gaps = 38/257 (14%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL E  GQ         L++  E+ K  +     ++  GPPG+GKTTLA++ A   
Sbjct: 22  LRPKTLAEVIGQTHLLGEGKPLRLAFESGKPHS-----MILWGPPGVGKTTLARLTALAF 76

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V+    D+   +   +D         +LF+DEIHR +   ++ L P +E 
Sbjct: 77  DCEFIALSA-VLGGVKDIRESMEQAKDTLNRTGRHTILFVDEIHRFNKGQQDALLPFVES 135

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
             L   +G      S ++N    + + +  +V +L +           LN  E+  L   
Sbjct: 136 -GLVTFIGATTENPSFEVN----SALLSRAQVYVLKS-----------LNDDEMRQLLKR 179

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
            Q  A L GLA  D+A   +   + G  R    LL + +  A  A   TI  +   +A+ 
Sbjct: 180 AQEIA-LDGLAFDDKAIDTLVGYADGDARRFLNLLEQAQTAATSAGVATIDADFVSSAMT 238

Query: 252 RLA--IDKMG---FDQL 263
             A   DK G   +DQ+
Sbjct: 239 LNARRFDKGGDNFYDQI 255


>gi|301156050|emb|CBW15521.1| recombination protein [Haemophilus parainfluenzae T3T1]
          Length = 446

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 56/115 (48%), Gaps = 7/115 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  LE++ GQ       K   +A +A    +  ++  GPPG GKTTLA+++A  +   
Sbjct: 20  MRPTNLEQYYGQTHLIGEGKPLRKAIQA--GHVHSMILWGPPGTGKTTLAEIIANRINAE 77

Query: 82  FRS----TSGPVIAKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMED 131
                  TSG    +     A    L DR  +LF+DE+HR +   ++   P +ED
Sbjct: 78  VERISAVTSGVKEIRESIERAKQNRLADRQTILFVDEVHRFNKSQQDAFLPHIED 132


>gi|212635390|ref|YP_002311915.1| recombination factor protein RarA [Shewanella piezotolerans WP3]
 gi|212556874|gb|ACJ29328.1| AAA ATPase, central region [Shewanella piezotolerans WP3]
          Length = 443

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 69/139 (49%), Gaps = 17/139 (12%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP TL ++ GQ         L+  +EA +A +     ++F GPPG GKTTLA++VA   
Sbjct: 19  MRPETLSQYIGQQHLLGEGQPLRQALEAGRAHS-----MMFWGPPGTGKTTLAELVASYA 73

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131
             +    S  V +   ++ + + + +        R +LF+DE+HR +   ++   P +ED
Sbjct: 74  NAHVERISA-VTSGVKEIRSAIEHAKSVAQSRGQRTLLFVDEVHRFNKSQQDAFLPFIED 132

Query: 132 FQLDLMVGEGPSARSVKIN 150
             + + +G      S +IN
Sbjct: 133 GTV-IFIGATTENPSFEIN 150


>gi|294625024|ref|ZP_06703674.1| ATPase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122]
 gi|294666603|ref|ZP_06731842.1| ATPase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535]
 gi|292600699|gb|EFF44786.1| ATPase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122]
 gi|292603623|gb|EFF47035.1| ATPase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535]
          Length = 429

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 67/137 (48%), Gaps = 14/137 (10%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL+E  GQ   +   S L+  +E+ +  +     ++  GPPG GKTTLA ++A   
Sbjct: 1   MRPRTLDEMVGQKRLLAPDSALRRAVESGRVHS-----MILWGPPGCGKTTLALLLAHYA 55

Query: 79  GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
              F++ S      P + +    AA       R VLF+DE+HR +   ++   P +E   
Sbjct: 56  DAEFKAISAVLSGLPEVRQVLAEAAQRFAGGRRTVLFVDEVHRFNKAQQDAFLPHIERGT 115

Query: 134 LDLMVGEGPSARSVKIN 150
           + L VG      S ++N
Sbjct: 116 I-LFVGATTENPSFELN 131


>gi|229019621|ref|ZP_04176433.1| hypothetical protein bcere0030_41230 [Bacillus cereus AH1273]
 gi|229025861|ref|ZP_04182257.1| hypothetical protein bcere0029_41520 [Bacillus cereus AH1272]
 gi|228735413|gb|EEL86012.1| hypothetical protein bcere0029_41520 [Bacillus cereus AH1272]
 gi|228741669|gb|EEL91857.1| hypothetical protein bcere0030_41230 [Bacillus cereus AH1273]
          Length = 428

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 71/263 (26%), Positives = 103/263 (39%), Gaps = 47/263 (17%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  ++E  GQ       K+     +A       ++  GPPG GKT++A  +A   G  
Sbjct: 9   MRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAIAGSTGTP 66

Query: 82  FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
           FR  +  V     D+  ++    +    VL +DE+HRL    ++ L P +E   L     
Sbjct: 67  FRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLL----- 120

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEI----ED-----LK 189
                          TLI ATT     +NP       I  R   +E+    ED     LK
Sbjct: 121 ---------------TLIGATT-----SNPFHAINSAIRSRCQIFELHALTEDDILIGLK 160

Query: 190 TIVQRGAKLTG---LAVTDEAACEIAMRSRGTPRIAGRLLRR--VRDFAEVAHAKTITRE 244
             ++   K  G   + VT+EA    A  S G  R A   L    +  F     A  IT E
Sbjct: 161 RALEDKEKGLGEYDVTVTNEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLE 220

Query: 245 IADAALLRLAI--DKMGFDQLDL 265
           IA+  L + +   DK G    D+
Sbjct: 221 IAEECLQKKSFVHDKGGDAHYDV 243


>gi|320095686|ref|ZP_08027342.1| replication-associated recombination protein A [Actinomyces sp.
           oral taxon 178 str. F0338]
 gi|319977407|gb|EFW09094.1| replication-associated recombination protein A [Actinomyces sp.
           oral taxon 178 str. F0338]
          Length = 456

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 70/137 (51%), Gaps = 14/137 (10%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP +L+E  GQ   +     L+  IEA +  +     ++F GPPG+GKTTLA+V+AR  
Sbjct: 23  MRPASLDEVVGQSHQIGPGKALRSMIEADRTPS-----MIFWGPPGVGKTTLARVIARRT 77

Query: 79  GVNF----RSTSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             +F      TSG   I +    A    +   R ++F+DEIHR +   ++   P +E   
Sbjct: 78  CASFIDFSAVTSGIKEIREVMRQADAQASTGRRTIVFVDEIHRFNKAQQDAFLPFVEKGS 137

Query: 134 LDLMVGEGPSARSVKIN 150
           + +++G      S ++N
Sbjct: 138 I-ILIGATTENPSFEVN 153


>gi|308189843|ref|YP_003922774.1| hypothetical protein MFE_02830 [Mycoplasma fermentans JER]
 gi|307624585|gb|ADN68890.1| hypothetical protein MFE_02830 [Mycoplasma fermentans JER]
          Length = 235

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/216 (20%), Positives = 96/216 (44%), Gaps = 7/216 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           L P   +EF GQ +   +L + ++ +K     + +++FV P G GK +LA ++++    +
Sbjct: 4   LTPINFKEFRGQKDLIKSLIILLQESKK----IPNMIFVAPKGYGKYSLANIISQFKDRS 59

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
               +   I    +L  +L NL++  +LFI++I++L   ++++L+       LD +    
Sbjct: 60  LHPITSNNIIDEFELLNILANLKNNAILFIEDINKLKPELKKLLFDIYNSINLDKVEKIC 119

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            S + +KI    F++I        + +   + F I   L  Y + +L  I+      T  
Sbjct: 120 YSNKRLKI--KNFSIIGTINSSNQIDSSKWEGFKI-FNLKKYSLNNLNQIINYNRIKTNF 176

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            +++     I       P I   +  +  D+  + +
Sbjct: 177 KLSNSLVEYILNNCNNNPGILNEVYLKAIDYFAIKN 212


>gi|116510915|ref|YP_808131.1| recombination factor protein RarA [Lactococcus lactis subsp.
           cremoris SK11]
 gi|116106569|gb|ABJ71709.1| Recombination protein MgsA [Lactococcus lactis subsp. cremoris
           SK11]
          Length = 419

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 60/124 (48%), Gaps = 17/124 (13%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR ++E  GQ       K+     +   + L  ++  GPPG+GKT++A  +A  + + 
Sbjct: 9   MRPRNIDEIVGQRHLVGKGKIIRRMVET--QLLSSMILYGPPGIGKTSIASAIAGTMNIA 66

Query: 82  FRSTSGPV--------IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           FR+ +           IA   + +  L       VL +DEIHRL    ++ L P +E+ Q
Sbjct: 67  FRTFNATTDTKKRLQEIASEAEFSGQL-------VLLLDEIHRLDKPKQDFLLPLLENGQ 119

Query: 134 LDLM 137
           + L+
Sbjct: 120 IILI 123


>gi|297289911|ref|XP_002803619.1| PREDICTED: ATPase WRNIP1 [Macaca mulatta]
          Length = 619

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 74/151 (49%), Gaps = 21/151 (13%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75
           +RP TL+++ GQ  A      L+  +E  +     +  ++  GPPG GKTTLA ++A   
Sbjct: 231 MRPDTLQDYFGQSRAVGQDTLLRSLLETNE-----IPSLILWGPPGCGKTTLAHIIANNS 285

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPA 128
           ++  + F + S    AK  D+  ++   ++       + +LFIDEIHR +   ++   P 
Sbjct: 286 KKHSIRFVTLSA-TNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPH 344

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLI 157
           +E   + L+    E PS +     LSR  +I
Sbjct: 345 VECGTITLIGATTENPSFQVNAALLSRCRVI 375


>gi|260582200|ref|ZP_05849994.1| formyltetrahydrofolate deformylase [Haemophilus influenzae NT127]
 gi|260094832|gb|EEW78726.1| formyltetrahydrofolate deformylase [Haemophilus influenzae NT127]
          Length = 446

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 60/115 (52%), Gaps = 7/115 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP +LE++ GQ       K   +A +A    +  ++  GPPG GKTTLA+++A+ +   
Sbjct: 20  MRPTSLEQYFGQSHLIGEGKPLRKAIQAGH--IHSMILWGPPGTGKTTLAEIIAQRINAE 77

Query: 82  FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
                  TSG   I +A D A      + + +LF+DE+HR +   ++   P +ED
Sbjct: 78  VERISAVTSGIKEIREAIDRAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIED 132


>gi|261856111|ref|YP_003263394.1| ATPase AAA [Halothiobacillus neapolitanus c2]
 gi|261836580|gb|ACX96347.1| AAA ATPase central domain protein [Halothiobacillus neapolitanus
           c2]
          Length = 433

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 66/140 (47%), Gaps = 11/140 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP T +E  GQ       K    A +AR      ++  GPPG+GKTTLA+++A+    +
Sbjct: 17  LRPHTPDEVIGQTHLLGEGKPLRLAFEARKP--HSMILWGPPGVGKTTLARLMAKAFDSS 74

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F + S  V +   D+ A +   E         +LFIDEIHR +   ++ L P  E   + 
Sbjct: 75  FIALSA-VFSGVKDIRAAMDEAERNLALGHPTLLFIDEIHRFNKAQQDALLPYAESGLVT 133

Query: 136 LM--VGEGPSARSVKINLSR 153
           L+    E PS       LSR
Sbjct: 134 LIGATTENPSFEVNSALLSR 153


>gi|218899568|ref|YP_002447979.1| ATPase, AAA family [Bacillus cereus G9842]
 gi|228902927|ref|ZP_04067068.1| hypothetical protein bthur0014_40950 [Bacillus thuringiensis IBL
           4222]
 gi|218540581|gb|ACK92975.1| ATPase, AAA family [Bacillus cereus G9842]
 gi|228856711|gb|EEN01230.1| hypothetical protein bthur0014_40950 [Bacillus thuringiensis IBL
           4222]
          Length = 428

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 129/330 (39%), Gaps = 65/330 (19%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  ++E  GQ       K+     +A       ++  GPPG GKT++A  +A   G  
Sbjct: 9   MRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAIAGSTGTP 66

Query: 82  FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
           FR  +  V     D+  ++    +    VL +DE+HRL    ++ L P +E   L     
Sbjct: 67  FRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLL----- 120

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEI----ED-----LK 189
                          TLI ATT     +NP       I  R   +E+    ED     LK
Sbjct: 121 ---------------TLIGATT-----SNPFHAINSAIRSRCQIFELHALTEDDILIGLK 160

Query: 190 TIVQRGAKLTG---LAVTDEAACEIAMRSRGTPRIAGRLLRR--VRDFAEVAHAKTITRE 244
             ++   K  G   + +TDEA       S G  R A   L    +  F     A  IT E
Sbjct: 161 RALEDKEKGLGEYAVTITDEALHHFTNASGGDMRSAYNALELAVLSSFTTDDQAAEITLE 220

Query: 245 IADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           IA+  L + +   DK G    D+  L+   ++  G  V              A+  L   
Sbjct: 221 IAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDVNA------------ALHYLAR- 265

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
            +I+ G +Q    GR L+ +A++ +G+  P
Sbjct: 266 -LIEAGDLQSI--GRRLLIMAYEDIGLASP 292


>gi|159042869|ref|YP_001531663.1| recombination factor protein RarA [Dinoroseobacter shibae DFL 12]
 gi|157910629|gb|ABV92062.1| AAA ATPase central domain protein [Dinoroseobacter shibae DFL 12]
          Length = 436

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 63/134 (47%), Gaps = 8/134 (5%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP  L E  GQ             A     AL  V+F GPPG+GKTT+A+++A E  + 
Sbjct: 24  LRPAHLSEVIGQDHLLGPDGPL--GAMLANRALSSVIFWGPPGVGKTTIARLLAAETDLA 81

Query: 82  FRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           F   S      P + K  + A L        +LF+DEIHR +   ++   P MED  + +
Sbjct: 82  FVQISAIFTGVPDLRKVFEAARLRRQGGQGTLLFVDEIHRFNKAQQDGFLPHMEDGTI-V 140

Query: 137 MVGEGPSARSVKIN 150
           +VG      S ++N
Sbjct: 141 LVGATTENPSFELN 154


>gi|91216068|ref|ZP_01253036.1| putative AAA family ATPase protein [Psychroflexus torquis ATCC
           700755]
 gi|91185585|gb|EAS71960.1| putative AAA family ATPase protein [Psychroflexus torquis ATCC
           700755]
          Length = 425

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 66/143 (46%), Gaps = 15/143 (10%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L ++  Q           +  K   + +  ++  GPPG+GKTTLA ++++E   +
Sbjct: 9   LRPKQLSDYLSQTHLIGEKGTISQMIKR--DLIPSIILWGPPGIGKTTLANLISKETKRS 66

Query: 82  FRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           F + S           VI KA     L    +   +LFIDEIHR S   ++ L  A+E  
Sbjct: 67  FFTLSAISSGVKDVREVIQKAKQDQGLFE--QKNPILFIDEIHRFSKSQQDSLLGAVEKG 124

Query: 133 QLDLM--VGEGPSARSVKINLSR 153
            + L+    E PS   +   LSR
Sbjct: 125 WITLIGATTENPSFEVIPALLSR 147


>gi|169771463|ref|XP_001820201.1| AAA family ATPase [Aspergillus oryzae RIB40]
 gi|83768060|dbj|BAE58199.1| unnamed protein product [Aspergillus oryzae]
          Length = 527

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 110/263 (41%), Gaps = 52/263 (19%)

Query: 22  LRPRTLEEFTGQ--VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +RPRTL++  GQ  V     L+  IE  +  +     ++  G PG GKTT+A+V+A  +G
Sbjct: 120 MRPRTLDDVCGQDLVGPHGVLRGLIEHDRVPS-----MILWGGPGTGKTTIARVIASMVG 174

Query: 80  VNF----RSTSGPVIAKA--GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             F     ++SG    K    D  + L     + ++F DEIHR S   +++    +E  Q
Sbjct: 175 SRFVEINSTSSGVAECKKIFSDAKSELNLTGRKTIIFCDEIHRFSKSQQDVFLGPVESGQ 234

Query: 134 LDLM--VGEGPSARSVKINLSR---FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + L+    E PS +     LSR   FTL   T                         ED+
Sbjct: 235 VTLIGATTENPSFKVQNALLSRCRTFTLTKLTD------------------------EDV 270

Query: 189 KTIVQRGAKLTG------LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           K+I+ R  ++ G        V DE    +A  S G  R +  LL    D ++      IT
Sbjct: 271 KSILDRALQVEGPNYSPSALVDDELINYLAKFSDGDARTSLNLLELAMDLSK---RPGIT 327

Query: 243 REIADAALLR-LAIDKMGFDQLD 264
           +E    +L + L  D+ G    D
Sbjct: 328 KEELKRSLTKTLVYDRAGDQHYD 350


>gi|254427548|ref|ZP_05041255.1| ATPase, AAA family, putative [Alcanivorax sp. DG881]
 gi|196193717|gb|EDX88676.1| ATPase, AAA family, putative [Alcanivorax sp. DG881]
          Length = 443

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 77/164 (46%), Gaps = 16/164 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP  L+++ GQ       K   +A   R + L  ++  GPPG GKTTLA ++A+ +   
Sbjct: 20  LRPAHLDDYVGQQHLVGEGKPLRQALD-RGQ-LHSMILWGPPGTGKTTLALIMAQTVDAA 77

Query: 82  FRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F + S  V++   D+ A +   +       R VLF+DE+HR +   ++   P +E+  + 
Sbjct: 78  FITLSA-VLSGVKDIRAAVEQAQIRLGQGRRTVLFVDEVHRFNKAQQDAFLPHVEEGTIT 136

Query: 136 LM--VGEGPS-----ARSVKINLSRFTLIAATTRVGLLTNPLQD 172
            +    E PS     A   +  + R   +A     GLL   LQD
Sbjct: 137 FIGATTENPSFELNNALLSRARVYRLRALAPDDLSGLLGRALQD 180


>gi|170049711|ref|XP_001858122.1| werner helicase interacting protein [Culex quinquefasciatus]
 gi|167871474|gb|EDS34857.1| werner helicase interacting protein [Culex quinquefasciatus]
          Length = 529

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 76/161 (47%), Gaps = 22/161 (13%)

Query: 14  QEDADISL---LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGK 67
           +ED+ + L   +RP  L ++ GQ +       L+   E+      ++  ++F GPPG GK
Sbjct: 124 KEDSQVPLAEKMRPVELTDYIGQEQIIGKNTVLRTLFES-----NSIPSMIFWGPPGCGK 178

Query: 68  TTLAQVVARELG-------VNFRSTSGPV--IAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
           TTLA ++A           V   +T   V  + +A  +A      + + +LF+DEIHR +
Sbjct: 179 TTLAHIIAAHCKKHENMRFVKLSATMSGVNDVKEAVKVAKNELKFKRKTILFMDEIHRFN 238

Query: 119 IIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLI 157
            + ++I  P +E   + L+    E PS       LSR  +I
Sbjct: 239 KLQQDIFLPHVESGTVTLLGATTENPSFSLNSALLSRCRVI 279


>gi|319787147|ref|YP_004146622.1| ATPase AAA [Pseudoxanthomonas suwonensis 11-1]
 gi|317465659|gb|ADV27391.1| AAA ATPase central domain protein [Pseudoxanthomonas suwonensis
           11-1]
          Length = 436

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 21/121 (17%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPR+L+E  GQ   +   S L+  +E  +  +     ++  GPPG GKTTL+ ++A+  
Sbjct: 8   MRPRSLDEMVGQRRLLAPGSALRRAVEGGRVHS-----MILWGPPGCGKTTLSLLLAQYA 62

Query: 79  GVNFRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
              FR+ S           V+A+AG       +   R VLF+DE+HR +   ++   P +
Sbjct: 63  DAEFRAISAVLSGLPEVRQVLAEAGQ----RFDAGRRTVLFVDEVHRFNKTQQDAFLPHI 118

Query: 130 E 130
           E
Sbjct: 119 E 119


>gi|257462974|ref|ZP_05627378.1| recombination factor protein RarA [Fusobacterium sp. D12]
 gi|317060591|ref|ZP_07925076.1| recombination factor protein RarA [Fusobacterium sp. D12]
 gi|313686267|gb|EFS23102.1| recombination factor protein RarA [Fusobacterium sp. D12]
          Length = 410

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 100/228 (43%), Gaps = 48/228 (21%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP++L+E  GQ         L+  IE        L + +F GPPG GK++L ++++  +
Sbjct: 18  LRPQSLDEIFGQENLLGKHGVLRKLIEKG-----TLTNSIFFGPPGCGKSSLGEIISHTM 72

Query: 79  GVNFRSTSGPVIAKAGDLAALL----TNLE---DRDVLFIDEIHRLSIIVEEILYPAMED 131
              F S +    A   D+  ++     N+E    + +LF+DEIHR + + ++ L    ED
Sbjct: 73  DCAFESLNA-TTASLQDIKEVVGKAKRNIEYYQKKTILFLDEIHRFNKLQQDALLSYCED 131

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTR--VGLLTNPLQDRFGIPIRLNFYEIEDLK 189
                                 F LI ATT      L N L  R  +       E + ++
Sbjct: 132 --------------------GTFILIGATTENPYYSLNNALLSRVMV-FEFKALEKQAIQ 170

Query: 190 TIVQRGAKLTGLAVT---DEAACEIAMRSRGTPRIAGR---LLRRVRD 231
            I+ R  + TG++++   ++   E+A   +G  R+A     L + V+D
Sbjct: 171 QILTRAQQKTGISLSPFLEDVMVEMA---QGDSRVALNYLELYQNVKD 215


>gi|309973263|gb|ADO96464.1| Recombination factor RarA [Haemophilus influenzae R2846]
          Length = 446

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 58/115 (50%), Gaps = 7/115 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP +LE++ GQ       K   +A +A    +  ++  GPPG GKTTLA+++A+ +   
Sbjct: 20  MRPTSLEQYFGQSHLIGEGKPLRKAIQAGH--IHSMILWGPPGTGKTTLAEIIAQRINAE 77

Query: 82  FRS----TSGPVIAKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMED 131
                  TSG    +     A    L DR  +LF+DE+HR +   ++   P +ED
Sbjct: 78  VERISAVTSGIKEIREAIERAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIED 132


>gi|296197533|ref|XP_002746324.1| PREDICTED: ATPase WRNIP1-like isoform 3 [Callithrix jacchus]
          Length = 620

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 74/151 (49%), Gaps = 21/151 (13%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75
           +RP TL+++ GQ  A      L+  +E  +     +  ++  GPPG GKTTLA ++A   
Sbjct: 232 MRPDTLQDYFGQSRAVGQETLLRSLLETNE-----IPSLILWGPPGCGKTTLAHIIANNS 286

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPA 128
           ++  + F + S    AK  D+  ++   ++       + +LFIDEIHR +   ++   P 
Sbjct: 287 KKHSIRFVTLSA-TNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPH 345

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLI 157
           +E   + L+    E PS +     LSR  +I
Sbjct: 346 VECGTITLIGATTENPSFQVNAALLSRCRVI 376


>gi|251798346|ref|YP_003013077.1| ATPase AAA [Paenibacillus sp. JDR-2]
 gi|247545972|gb|ACT02991.1| AAA ATPase central domain protein [Paenibacillus sp. JDR-2]
          Length = 436

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 59/116 (50%), Gaps = 10/116 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP TL+++ GQ       K+   A +   + +  +L  GPPG GKTTLA ++++     
Sbjct: 21  MRPETLDDYIGQEHIIGAGKLLRRAIEG--DQVSSILLYGPPGCGKTTLANIISKRTAGE 78

Query: 82  FRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAME 130
           F   +  V A   D+  ++   +        + +LF+DE+HR +   ++ L PA+E
Sbjct: 79  FVKLNA-VDASVKDVREVIDTAKTNKLMYGKKTILFLDEVHRFNTSRQDALLPAVE 133


>gi|325568303|ref|ZP_08144670.1| replication-associated recombination protein A [Enterococcus
           casseliflavus ATCC 12755]
 gi|325158072|gb|EGC70225.1| replication-associated recombination protein A [Enterococcus
           casseliflavus ATCC 12755]
          Length = 425

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 4/130 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR L+E  GQ       K+     +A+   L  ++  GPPG GKT++A  +A      
Sbjct: 9   MRPRNLDEVVGQQHLVGPGKIIRRMVEAKM--LSSMILYGPPGTGKTSIASAIAGSTRYA 66

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR  +     K    + A    +    +L +DE+HRL    ++ L P +E  ++ +M+G 
Sbjct: 67  FRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEVHRLDKTKQDFLLPHLESGKI-IMIGA 125

Query: 141 GPSARSVKIN 150
                 + IN
Sbjct: 126 TTENPYITIN 135


>gi|197334410|ref|YP_002155669.1| ATPase, AAA family [Vibrio fischeri MJ11]
 gi|197315900|gb|ACH65347.1| ATPase, AAA family [Vibrio fischeri MJ11]
          Length = 448

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 93/231 (40%), Gaps = 45/231 (19%)

Query: 22  LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP+ +E++ GQ         L+  +EA +     +  ++  GPPG GKTTLA+V A   
Sbjct: 21  MRPQNIEQYIGQQHLLGVGKPLRRALEAGQ-----IHSMILWGPPGTGKTTLAEVAANYA 75

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDF 132
                  S  V +   D+ A +   ++      R ++F+DE+HR +   ++   P +ED 
Sbjct: 76  NAEVERVSA-VTSGVKDIRAAIEKAKENQITGRRTIMFVDEVHRFNKSQQDAFLPHIED- 133

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGL--LTNPLQDRFGIPIRLNFYEIEDLKT 190
                                 T I ATT      L N L  R  +  +L   E ED+  
Sbjct: 134 -------------------GTITFIGATTENPSFELNNALLSRARV-YKLKSLEKEDIVQ 173

Query: 191 IV-------QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
           ++        RG       + D+   ++A    G  R++   L  + D AE
Sbjct: 174 VIDQALLDKDRGLNDENFVLPDDVKLQLADLVSGDARMSLNYLELLHDMAE 224


>gi|145641740|ref|ZP_01797316.1| formyltetrahydrofolate deformylase [Haemophilus influenzae R3021]
 gi|145273554|gb|EDK13424.1| formyltetrahydrofolate deformylase [Haemophilus influenzae 22.4-21]
          Length = 446

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 58/115 (50%), Gaps = 7/115 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP +LE++ GQ       K   +A +A    +  ++  GPPG GKTTLA+++A+ +   
Sbjct: 20  MRPTSLEQYFGQSHLIGEGKPLRKAIQAGH--IHSMILWGPPGTGKTTLAEIIAQRINAE 77

Query: 82  FRS----TSGPVIAKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMED 131
                  TSG    +     A    L DR  +LF+DE+HR +   ++   P +ED
Sbjct: 78  VERISAVTSGIKEIREAIERAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIED 132


>gi|145632980|ref|ZP_01788713.1| formyltetrahydrofolate deformylase [Haemophilus influenzae 3655]
 gi|144986636|gb|EDJ93202.1| formyltetrahydrofolate deformylase [Haemophilus influenzae 3655]
          Length = 446

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 60/115 (52%), Gaps = 7/115 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP +LE++ GQ       K   +A +A    +  ++  GPPG GKTTLA+++A+ +   
Sbjct: 20  MRPTSLEQYFGQSHLIGEGKPLRKAIQAGH--IHSMILWGPPGTGKTTLAEIIAQRINAE 77

Query: 82  FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
                  TSG   I +A D A      + + +LF+DE+HR +   ++   P +ED
Sbjct: 78  VERISAVTSGIKEIREAIDRAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIED 132


>gi|167837525|ref|ZP_02464408.1| recombination factor protein RarA [Burkholderia thailandensis
           MSMB43]
          Length = 436

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 81/326 (24%), Positives = 135/326 (41%), Gaps = 58/326 (17%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL +  GQ         LK+  E+ K  +     ++  GPPG+GKTTLA++ A   
Sbjct: 17  LRPKTLADVIGQTHLLGEGKPLKLAFESGKPHS-----MILWGPPGVGKTTLARLTALAF 71

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V+    D+   +    D         +LF+DEIHR +   ++ L P +E 
Sbjct: 72  DCEFIALSA-VLGGVKDIREAMEQARDTLNRTGRHTILFVDEIHRFNKAQQDALLPFVES 130

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
             L   +G      S ++N    + + +  +V +L +  +D              +L+ +
Sbjct: 131 -GLVTFIGATTENPSFEVN----SALLSRAQVYVLKSLAED--------------ELRQL 171

Query: 192 VQRG--AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
           ++R     L GLA   +A   +   + G  R    LL + +  A  A   TI     DAA
Sbjct: 172 LKRAQDTALDGLAFDGKAVDTLVGYADGDARRFLNLLEQAQTAATSAGVTTI-----DAA 226

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNF-GGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            +  A             +TM AR F  GG    + ISA     R +  D    ++ +  
Sbjct: 227 FVESA-------------MTMNARRFDKGGDNFYDQISALHKSVRGSSPDGALYWLCRML 273

Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIP 332
                P+   R ++ +AW+ +G+  P
Sbjct: 274 DGGADPKYLARRVVRMAWEDIGLADP 299


>gi|115391273|ref|XP_001213141.1| hypothetical protein ATEG_03963 [Aspergillus terreus NIH2624]
 gi|114194065|gb|EAU35765.1| hypothetical protein ATEG_03963 [Aspergillus terreus NIH2624]
          Length = 531

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 109/263 (41%), Gaps = 52/263 (19%)

Query: 22  LRPRTLEEFTGQVEACSN--LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +RPRTL+E  GQ     N  L+  IE  +     +  ++  G PG GKTT+A+V+A  +G
Sbjct: 126 MRPRTLDEVCGQDLVGPNGVLRGLIEQDR-----VPSMVLWGGPGTGKTTIARVIASMVG 180

Query: 80  VNF---RSTSGPVIAKAGDLAALLTNL---EDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             F    STS  V       A   + L     + ++F DEIHR S   +++    +E  Q
Sbjct: 181 SRFVEINSTSTGVAECKKIFAEAKSELGLTGRKTIIFCDEIHRFSKSQQDVFLGPVESGQ 240

Query: 134 LDLM--VGEGPSARSVKINLSR---FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + L+    E PS +     LSR   FTL   T                         ED+
Sbjct: 241 VTLIGATTENPSFKVQSALLSRCRTFTLAKLTD------------------------EDV 276

Query: 189 KTIVQRGAKLTG------LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           K+I+ R  ++ G        V DE    +A  S G  R +  LL    D ++      IT
Sbjct: 277 KSILNRALQVEGPNYSPSALVDDELITYLAKFSDGDARTSLNLLELAMDLSK---RPDIT 333

Query: 243 REIADAALLR-LAIDKMGFDQLD 264
           +E    +L + L  D+ G    D
Sbjct: 334 KEELKRSLTKTLVYDRAGDQHYD 356


>gi|229163348|ref|ZP_04291300.1| hypothetical protein bcere0009_41140 [Bacillus cereus R309803]
 gi|228620129|gb|EEK77003.1| hypothetical protein bcere0009_41140 [Bacillus cereus R309803]
          Length = 428

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 104/250 (41%), Gaps = 21/250 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  ++E  GQ       K+     +A       ++  GPPG GKT++A  +A   G  
Sbjct: 9   MRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAIAGSTGTP 66

Query: 82  FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
           FR  +  V     D+  ++    +    VL +DE+HRL    ++ L P +E   L L +G
Sbjct: 67  FRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLLTL-IG 124

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199
              S     IN    + I +  ++  L    +D   I ++L    +ED     ++G    
Sbjct: 125 ATTSNPFHAIN----SAIRSRCQIFELHALTEDDLLIGLKL---ALED----KEKGLGEY 173

Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRR--VRDFAEVAHAKTITREIADAALLRLAI-- 255
            + VT EA    A  S G  R A   L    +  F     A  IT EIA+  L + +   
Sbjct: 174 NVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEECLQKKSFVH 233

Query: 256 DKMGFDQLDL 265
           DK G    D+
Sbjct: 234 DKGGDAHYDV 243


>gi|145627717|ref|ZP_01783518.1| formyltetrahydrofolate deformylase [Haemophilus influenzae 22.1-21]
 gi|145639902|ref|ZP_01795502.1| formyltetrahydrofolate deformylase [Haemophilus influenzae PittII]
 gi|144979492|gb|EDJ89151.1| formyltetrahydrofolate deformylase [Haemophilus influenzae 22.1-21]
 gi|145270993|gb|EDK10910.1| formyltetrahydrofolate deformylase [Haemophilus influenzae PittII]
 gi|309751081|gb|ADO81065.1| Recombination factor RarA [Haemophilus influenzae R2866]
          Length = 446

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 60/115 (52%), Gaps = 7/115 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP +LE++ GQ       K   +A +A    +  ++  GPPG GKTTLA+++A+ +   
Sbjct: 20  MRPTSLEQYFGQSHLIGEGKPLRKAIQA--GHIHSMILWGPPGTGKTTLAEIIAQRINAE 77

Query: 82  FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
                  TSG   I +A D A      + + +LF+DE+HR +   ++   P +ED
Sbjct: 78  VERISAVTSGIKEIREAIDRAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIED 132


>gi|296241869|ref|YP_003649356.1| replication factor C small subunit [Thermosphaera aggregans DSM
          11486]
 gi|296094453|gb|ADG90404.1| replication factor C small subunit [Thermosphaera aggregans DSM
          11486]
          Length = 325

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 38/63 (60%), Gaps = 6/63 (9%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81
          RPRTL+E   Q E  + LK F+       + + H+LF GPPG GKTT+A  +A +L G N
Sbjct: 13 RPRTLDEVVNQSEIVARLKKFVSD-----KNMPHMLFAGPPGTGKTTMAHCLAHDLYGDN 67

Query: 82 FRS 84
          +R 
Sbjct: 68 YRQ 70


>gi|125622982|ref|YP_001031465.1| recombination factor protein RarA [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|124491790|emb|CAL96710.1| chromosome segregation helicase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|300069723|gb|ADJ59123.1| recombination factor protein RarA [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 419

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 60/124 (48%), Gaps = 17/124 (13%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR ++E  GQ       K+     +   + L  ++  GPPG+GKT++A  +A  + + 
Sbjct: 9   MRPRNIDEIVGQRHLVGKGKIIRRMVET--QLLSSMILYGPPGIGKTSIASAIAGTMNIA 66

Query: 82  FRSTSGPV--------IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           FR+ +           IA   + +  L       VL +DEIHRL    ++ L P +E+ Q
Sbjct: 67  FRTFNATTDTKKRLQEIASEAEFSGQL-------VLLLDEIHRLDKPKQDFLLPLLENGQ 119

Query: 134 LDLM 137
           + L+
Sbjct: 120 IILI 123


>gi|109069425|ref|XP_001090684.1| PREDICTED: ATPase WRNIP1 isoform 3 [Macaca mulatta]
          Length = 665

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 74/151 (49%), Gaps = 21/151 (13%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75
           +RP TL+++ GQ  A      L+  +E  +     +  ++  GPPG GKTTLA ++A   
Sbjct: 231 MRPDTLQDYFGQSRAVGQDTLLRSLLETNE-----IPSLILWGPPGCGKTTLAHIIANNS 285

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPA 128
           ++  + F + S    AK  D+  ++   ++       + +LFIDEIHR +   ++   P 
Sbjct: 286 KKHSIRFVTLSA-TNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPH 344

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLI 157
           +E   + L+    E PS +     LSR  +I
Sbjct: 345 VECGTITLIGATTENPSFQVNAALLSRCRVI 375


>gi|326772947|ref|ZP_08232231.1| ATPase, AAA family [Actinomyces viscosus C505]
 gi|326637579|gb|EGE38481.1| ATPase, AAA family [Actinomyces viscosus C505]
          Length = 477

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 73/148 (49%), Gaps = 19/148 (12%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPR L++  GQ +  ++   L   + + +     L  ++  GPPG GKTT+A+++A   
Sbjct: 36  LRPRALDDVVGQDQLLADDAPLGRMVASGR-----LSSIILWGPPGCGKTTIARLLADRT 90

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDF 132
           G+ F   S    +   DL  + T    R       +LF+DEIHR +   ++   P +ED 
Sbjct: 91  GLVFEQVSA-TFSGVADLRKVFTAAARRREIGQGTLLFVDEIHRFNRAQQDSFLPYVEDG 149

Query: 133 QLDLMVGEGPSARSVKIN---LSRFTLI 157
            + ++VG      S ++N   LSR  ++
Sbjct: 150 TV-VLVGATTENPSFELNGALLSRCQVM 176


>gi|325927614|ref|ZP_08188843.1| Recombination protein MgsA [Xanthomonas perforans 91-118]
 gi|325541981|gb|EGD13494.1| Recombination protein MgsA [Xanthomonas perforans 91-118]
          Length = 457

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 69/138 (50%), Gaps = 16/138 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL+E  GQ   +   S L+  +E+ +  +     ++  GPPG GKTTLA ++A   
Sbjct: 29  MRPRTLDEMVGQKRLLAPDSALRRAVESGRVHS-----MILWGPPGCGKTTLALLLAHYA 83

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDF 132
              F++ S  V++   ++  +L           R VLF+DE+HR +   ++   P +E  
Sbjct: 84  DAEFKAISA-VLSGLPEVRQVLAGAAQRFAGGRRTVLFVDEVHRFNKAQQDAFLPHIERG 142

Query: 133 QLDLMVGEGPSARSVKIN 150
            + L VG      S ++N
Sbjct: 143 TI-LFVGATTENPSFELN 159


>gi|301170352|emb|CBW29958.1| recombination protein [Haemophilus influenzae 10810]
          Length = 446

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 60/115 (52%), Gaps = 7/115 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP +LE++ GQ       K   +A +A    +  ++  GPPG GKTTLA+++A+ +   
Sbjct: 20  MRPTSLEQYFGQSHLIGEGKPLRKAIQAGH--IHSMILWGPPGTGKTTLAEIIAQRINAE 77

Query: 82  FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
                  TSG   I +A D A      + + +LF+DE+HR +   ++   P +ED
Sbjct: 78  VERISAVTSGIKEIREAIDRAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIED 132


>gi|296197529|ref|XP_002746322.1| PREDICTED: ATPase WRNIP1-like isoform 1 [Callithrix jacchus]
          Length = 666

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 74/151 (49%), Gaps = 21/151 (13%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75
           +RP TL+++ GQ  A      L+  +E  +     +  ++  GPPG GKTTLA ++A   
Sbjct: 232 MRPDTLQDYFGQSRAVGQETLLRSLLETNE-----IPSLILWGPPGCGKTTLAHIIANNS 286

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPA 128
           ++  + F + S    AK  D+  ++   ++       + +LFIDEIHR +   ++   P 
Sbjct: 287 KKHSIRFVTLSA-TNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPH 345

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLI 157
           +E   + L+    E PS +     LSR  +I
Sbjct: 346 VECGTITLIGATTENPSFQVNAALLSRCRVI 376


>gi|257866969|ref|ZP_05646622.1| AAA ATPase [Enterococcus casseliflavus EC30]
 gi|257873303|ref|ZP_05652956.1| AAA ATPase [Enterococcus casseliflavus EC10]
 gi|257801025|gb|EEV29955.1| AAA ATPase [Enterococcus casseliflavus EC30]
 gi|257807467|gb|EEV36289.1| AAA ATPase [Enterococcus casseliflavus EC10]
          Length = 425

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 4/130 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR L+E  GQ       K+     +A+   L  ++  GPPG GKT++A  +A      
Sbjct: 9   MRPRNLDEVVGQQHLVGPGKIIRRMVEAKM--LSSMILYGPPGTGKTSIASAIAGSTRYA 66

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR  +     K    + A    +    +L +DE+HRL    ++ L P +E  ++ +M+G 
Sbjct: 67  FRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEVHRLDKTKQDFLLPHLESGKI-IMIGA 125

Query: 141 GPSARSVKIN 150
                 + IN
Sbjct: 126 TTENPYITIN 135


>gi|134094254|ref|YP_001099329.1| recombination factor protein RarA [Herminiimonas arsenicoxydans]
 gi|133738157|emb|CAL61202.1| ATPase, AAA family protein [Herminiimonas arsenicoxydans]
          Length = 430

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 65/119 (54%), Gaps = 16/119 (13%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP TL+E  GQ   + A   L+V  E+ +  +     ++  GPPG+GKTTLA+++A   
Sbjct: 10  LRPHTLDEVIGQQHILGAGKPLRVAFESGEPHS-----MILWGPPGVGKTTLARLMADSF 64

Query: 79  GVNFRSTSGPVIAKAGDL-----AALLTN--LEDRDVLFIDEIHRLSIIVEEILYPAME 130
             +F + S  V++   D+      A L+   ++ R +LF+DE+HR +   ++   P +E
Sbjct: 65  NADFIALSA-VLSGVKDIRDAVERAQLSRGAMDRRTILFVDEVHRFNKSQQDAFLPHVE 122


>gi|323466477|gb|ADX70164.1| Helicase subunit of the Holliday junction resolvase related ATPase
           [Lactobacillus helveticus H10]
          Length = 424

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 62/119 (52%), Gaps = 5/119 (4%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+TL+E  GQ E     K      + +      ++  GPPG GK++LAQ++A++    
Sbjct: 15  MRPQTLDEVVGQQELLGEDKPLRRIIEQKVNI--SLILWGPPGTGKSSLAQIIAKQFDYP 72

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
               +  +  K G L   +     +  VL IDEIHR++  +++ L P +E+  + L+VG
Sbjct: 73  LAKFNASIDNK-GKLDQFIKTYPYQPFVLLIDEIHRMTKNLQDFLLPYLENGHI-LLVG 129


>gi|311742339|ref|ZP_07716148.1| replication-associated recombination protein A [Aeromicrobium
           marinum DSM 15272]
 gi|311313967|gb|EFQ83875.1| replication-associated recombination protein A [Aeromicrobium
           marinum DSM 15272]
          Length = 455

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 63/127 (49%), Gaps = 19/127 (14%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL+E  GQ   + A S L+  I+  +        ++  GPPG GKTT+A +++   
Sbjct: 39  MRPRTLDELVGQERLLAAGSPLRQMIDGDQPLT-----IILWGPPGTGKTTIASLISAHT 93

Query: 79  GVNFRSTSGPVIAK--------AGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
              F   S  V A         AG   AL   +E   VLF+DE+HR S   ++ L P +E
Sbjct: 94  DRRFVEVSA-VSAGVKEVRDVIAGARRALTNGVET--VLFVDEVHRFSKSQQDALLPGVE 150

Query: 131 DFQLDLM 137
           +  + L+
Sbjct: 151 NRWVSLV 157


>gi|320333638|ref|YP_004170349.1| AAA ATPase central domain-containing protein [Deinococcus
           maricopensis DSM 21211]
 gi|319754927|gb|ADV66684.1| AAA ATPase central domain protein [Deinococcus maricopensis DSM
           21211]
          Length = 438

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 81/171 (47%), Gaps = 20/171 (11%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEA-AKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           LRPRT+EE  GQ       +      A  R   L  ++  GPPG+GKTTLA+++AR +  
Sbjct: 14  LRPRTIEEVVGQRHLLGPGRPLTRTLASGR---LGSLILWGPPGVGKTTLARLLARAVDA 70

Query: 81  NFRSTSGPVIAKAGDL------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           +F + S  V A   D+      A        R +LF+DEIHR +   ++ L P +E   L
Sbjct: 71  HFIALSA-VSAGVKDIREAVGEAERERGRGRRTLLFLDEIHRFNKAQQDALLPHVESGLL 129

Query: 135 DLMVGEGPSARSVKINL-----SRFTLIAATTRV---GLLTNPLQDRFGIP 177
            L +G      S ++N      +R  ++ A T     GLL   L D  G+P
Sbjct: 130 TL-IGATTENPSFEVNPALRSRARTLVLEALTPEDIRGLLERALADERGLP 179


>gi|229845598|ref|ZP_04465724.1| recombination factor protein RarA [Haemophilus influenzae 6P18H1]
 gi|229811465|gb|EEP47168.1| recombination factor protein RarA [Haemophilus influenzae 6P18H1]
          Length = 446

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 60/115 (52%), Gaps = 7/115 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP +LE++ GQ       K   +A +A    +  ++  GPPG GKTTLA+++A+ +   
Sbjct: 20  MRPTSLEQYFGQSHLIGEGKPLRKAIQA--GHIHSMILWGPPGTGKTTLAEIIAQRINAE 77

Query: 82  FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
                  TSG   I +A D A      + + +LF+DE+HR +   ++   P +ED
Sbjct: 78  VERISAVTSGIKEIREAIDRAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIED 132


>gi|323339472|ref|ZP_08079751.1| AAA family ATPase [Lactobacillus ruminis ATCC 25644]
 gi|323093086|gb|EFZ35679.1| AAA family ATPase [Lactobacillus ruminis ATCC 25644]
          Length = 424

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 89/215 (41%), Gaps = 41/215 (19%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ ++E  GQ       K+     +A+   L  ++  GPPG GKT++A  +A      
Sbjct: 8   MRPKDIDEIVGQRHLVGEGKIIRRMVQAKL--LSSMILYGPPGTGKTSIASAIAGSTKYA 65

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR  +    +K   +  AL   +    +L +DEIHRL+   ++ L P +E          
Sbjct: 66  FRILNAATDSKKELEQVALEAKMSGTVILMLDEIHRLTKPKQDFLLPMLES--------- 116

Query: 141 GPSARSVKINLSRFTLIAATTRVGLLT-NPLQDRFGIPIRLNFYEI-----EDLKTIV-- 192
                       +  LI ATT    ++ NP      I  R   +E+     ED+KT +  
Sbjct: 117 -----------GKIILIGATTENPYISINP-----AIRSRTQIFEVQKLSEEDIKTAINR 160

Query: 193 -----QRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
                +RG     + + D+A   +A  + G  R A
Sbjct: 161 ALQDDERGLGKYHVVLDDDAMIHLARATNGDLRSA 195


>gi|194037953|ref|XP_001924550.1| PREDICTED: ATPase WRNIP1 [Sus scrofa]
          Length = 503

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 74/151 (49%), Gaps = 21/151 (13%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75
           LRP  L++F GQ  A      L+  +EA +     +  ++  GPPG GKTTLA ++A   
Sbjct: 69  LRPDALQDFVGQGRAVGPETLLRSLLEANE-----VPSLILWGPPGCGKTTLAHIIANNS 123

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPA 128
           ++  + F + S    AK  D+  ++   ++       + +LFIDEIHR +   ++   P 
Sbjct: 124 KKHSIRFVTLSA-TSAKTTDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPH 182

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLI 157
           +E   + L+    E PS +     LSR  +I
Sbjct: 183 VECGTITLIGATTENPSFQVNAALLSRCRVI 213


>gi|329117114|ref|ZP_08245831.1| ATPase, AAA family [Streptococcus parauberis NCFD 2020]
 gi|326907519|gb|EGE54433.1| ATPase, AAA family [Streptococcus parauberis NCFD 2020]
          Length = 423

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 59/126 (46%), Gaps = 18/126 (14%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPRT+ E  GQ       K+      A    L  ++  GPPG+GKT++A  +A      
Sbjct: 9   LRPRTISEVIGQKHLVGEGKIIRRMVDANM--LSSMILFGPPGIGKTSIASAIAGTTKYA 66

Query: 82  FRSTSGPV--------IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           FR+ +  V        IA+    +  L       VL +DEIHRL    ++ L P +E+  
Sbjct: 67  FRTFNATVDTKKRLQEIAEEAKFSGGL-------VLLLDEIHRLDKTKQDFLLPLLENGN 119

Query: 134 LDLMVG 139
           + +M+G
Sbjct: 120 I-IMIG 124


>gi|257877045|ref|ZP_05656698.1| AAA ATPase [Enterococcus casseliflavus EC20]
 gi|257811211|gb|EEV40031.1| AAA ATPase [Enterococcus casseliflavus EC20]
          Length = 425

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 4/130 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR L+E  GQ       K+     +A+   L  ++  GPPG GKT++A  +A      
Sbjct: 9   MRPRNLDEVVGQQHLVGPGKIIRRMVEAKM--LSSMILYGPPGTGKTSIASAIAGSTRYA 66

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR  +     K    + A    +    +L +DE+HRL    ++ L P +E  ++ +M+G 
Sbjct: 67  FRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEVHRLDKTKQDFLLPHLESGKI-IMIGA 125

Query: 141 GPSARSVKIN 150
                 + IN
Sbjct: 126 TTENPYITIN 135


>gi|329769837|ref|ZP_08261237.1| hypothetical protein HMPREF0433_01001 [Gemella sanguinis M325]
 gi|328838013|gb|EGF87635.1| hypothetical protein HMPREF0433_01001 [Gemella sanguinis M325]
          Length = 415

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 61/114 (53%), Gaps = 5/114 (4%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           I+ LRP+ +++  GQ       KV  +   ++ +    +L+ GPPG GKT++A  +A EL
Sbjct: 5   INRLRPKKIDDIIGQHHLIGENKVLTKIVTSK-KMFSFILY-GPPGTGKTSIANALANEL 62

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAME 130
              F+  +  V     DL  ++   +   + +L +DE HRL+  +++IL P +E
Sbjct: 63  DYKFKILNA-VNCTKKDLTTVIEESKRFKKVILLLDEFHRLTKPMQDILLPEIE 115


>gi|59711514|ref|YP_204290.1| recombination factor protein RarA [Vibrio fischeri ES114]
 gi|59479615|gb|AAW85402.1| recombination protein [Vibrio fischeri ES114]
          Length = 448

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 93/231 (40%), Gaps = 45/231 (19%)

Query: 22  LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP+ +E++ GQ         L+  +EA +     +  ++  GPPG GKTTLA+V A   
Sbjct: 21  MRPQNIEQYIGQQHLLGVGKPLRRALEAGQ-----IHSMILWGPPGTGKTTLAEVAANYA 75

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDF 132
                  S  V +   D+ A +   ++      R ++F+DE+HR +   ++   P +ED 
Sbjct: 76  NAEVERVSA-VTSGVKDIRAAIEKAKENQITGRRTIMFVDEVHRFNKSQQDAFLPHIED- 133

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGL--LTNPLQDRFGIPIRLNFYEIEDLKT 190
                                 T I ATT      L N L  R  +  +L   E ED+  
Sbjct: 134 -------------------GTITFIGATTENPSFELNNALLSRARV-YKLKSLEKEDIVQ 173

Query: 191 IV-------QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
           ++        RG       + D+   ++A    G  R++   L  + D AE
Sbjct: 174 VIDQALLDKDRGLNDENFVLPDDVKLQLADLVSGDARMSLNYLELLHDMAE 224


>gi|49474377|ref|YP_032419.1| recombination factor protein RarA [Bartonella quintana str.
           Toulouse]
 gi|49239881|emb|CAF26279.1| ATPase, aaa family [Bartonella quintana str. Toulouse]
          Length = 439

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 105/244 (43%), Gaps = 37/244 (15%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR+L++ TGQ        +   +    A ++  ++F GPPG GKTT+A+++A E    
Sbjct: 24  MRPRSLKDVTGQNHLLGEKGLL--SRMVVAGSIGSMIFWGPPGTGKTTVARLLALEKEFA 81

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDV------LFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F   S  +     +L  +    + R +      LF+DEIHR +   ++   P MED  + 
Sbjct: 82  FEQVSA-IFTGVSELKKIFEVAQARFMSGCKMLLFVDEIHRFNRAQQDSFLPFMEDGTV- 139

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           +++G      S ++N       A  +R  +LT    D             E L  +++R 
Sbjct: 140 ILIGATTENPSFELN------AALLSRARVLTFLPHDN------------ESLSMLLKRA 181

Query: 196 AKLTG--LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
            K+ G  L + D+A   +   S G  R A  L   V   A+         EI DA  L+ 
Sbjct: 182 EKVEGKILPLDDDARDVLIGMSDGDARAALTLAEEVWSVAQPG-------EIFDAGTLQK 234

Query: 254 AIDK 257
            I +
Sbjct: 235 IIQR 238


>gi|319776484|ref|YP_004138972.1| ATPase [Haemophilus influenzae F3047]
 gi|319897261|ref|YP_004135456.1| atpase [Haemophilus influenzae F3031]
 gi|317432765|emb|CBY81130.1| predicted ATPase [Haemophilus influenzae F3031]
 gi|317451075|emb|CBY87308.1| predicted ATPase [Haemophilus influenzae F3047]
          Length = 446

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 7/115 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  LE++ GQ       K   +A +A    +  ++  GPPG GKTTLA+++A+ +   
Sbjct: 20  MRPTNLEQYFGQSHLIGEGKPLRKAIQA--GHIHSMILWGPPGTGKTTLAEIIAQRINAE 77

Query: 82  FRS----TSGPVIAKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMED 131
                  TSG    +     A    L DR  +LF+DE+HR +   ++   P +ED
Sbjct: 78  VERISAVTSGIKEIREAIDRAKQNRLSDRKTILFVDEVHRFNKSQQDAFLPHIED 132


>gi|225010505|ref|ZP_03700976.1| AAA ATPase central domain protein [Flavobacteria bacterium
           MS024-3C]
 gi|225005334|gb|EEG43285.1| AAA ATPase central domain protein [Flavobacteria bacterium
           MS024-3C]
          Length = 425

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 61/133 (45%), Gaps = 15/133 (11%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP++LE +  Q        V  +  KA    +  ++  GPPG GKTTLA ++A +    
Sbjct: 9   VRPKSLEGYMSQTHLVGPAGVLTKQIKAGI--IPSIILWGPPGTGKTTLANIIAAQTERP 66

Query: 82  FRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           F + S           VI KA     L T      +LFIDEIHR S   ++ L  A+E  
Sbjct: 67  FYALSAINSGVKEVREVIEKAKQSGGLFTT--KNPLLFIDEIHRFSKSQQDSLLAAVEKG 124

Query: 133 QLDLM--VGEGPS 143
            + L+    E PS
Sbjct: 125 WVTLIGATTENPS 137


>gi|209884845|ref|YP_002288702.1| AAA ATPase, central region [Oligotropha carboxidovorans OM5]
 gi|209873041|gb|ACI92837.1| AAA ATPase, central region [Oligotropha carboxidovorans OM5]
          Length = 443

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 63/135 (46%), Gaps = 10/135 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPR L +  GQ              + R   L  ++F GPPG GKTT+A+++A    ++
Sbjct: 30  LRPRQLSDVVGQDHILGPDGALTRMLETRT--LGSLVFWGPPGTGKTTVARLLADATELH 87

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F   S  V +   DL  +      R       +LF+DE+HR +   ++   P MED  + 
Sbjct: 88  FEQISA-VFSGVADLKKVFDTARARRETGKGTLLFVDEVHRFNRAQQDSFLPVMEDGTV- 145

Query: 136 LMVGEGPSARSVKIN 150
           ++VG      S ++N
Sbjct: 146 VLVGATTENPSFELN 160


>gi|145631003|ref|ZP_01786779.1| predicted ATPase [Haemophilus influenzae R3021]
 gi|144983470|gb|EDJ90946.1| predicted ATPase [Haemophilus influenzae R3021]
          Length = 453

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 60/115 (52%), Gaps = 7/115 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP +LE++ GQ       K   +A +A    +  ++  GPPG GKTTLA+++A+ +   
Sbjct: 20  MRPTSLEQYFGQSHLIGEGKPLRKAIQAGH--IHSMILWGPPGTGKTTLAEIIAQRINAE 77

Query: 82  FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
                  TSG   I +A D A      + + +LF+DE+HR +   ++   P +ED
Sbjct: 78  VERISAVTSGIKEIREAIDRAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIED 132


>gi|187479165|ref|YP_787190.1| recombination factor protein RarA [Bordetella avium 197N]
 gi|115423752|emb|CAJ50303.1| putative ATPase [Bordetella avium 197N]
          Length = 459

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 68/143 (47%), Gaps = 17/143 (11%)

Query: 22  LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPRTL +  GQ         L+V  ++ +  +     ++F GPPG+GKTTLA+++A   
Sbjct: 38  LRPRTLADVVGQSHLLGPDKPLRVAFDSGRPHS-----MIFWGPPGVGKTTLARLMADGF 92

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMED- 131
             +F + S  V+    D+   +T  +       R +LF+DE+HR +   ++   P +E  
Sbjct: 93  DAHFIAISA-VLGGVKDIRDAVTAAQVAQGQGRRTILFVDEVHRFNKAQQDAFLPYVESG 151

Query: 132 -FQLDLMVGEGPSARSVKINLSR 153
            F       E PS       LSR
Sbjct: 152 LFTFIGATTENPSFEVNSALLSR 174


>gi|189036168|gb|ACD75434.1| AMDV4_5 [uncultured virus]
          Length = 294

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 10/118 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
            RP+ L+E  GQ    +    F    K+      HV+F GPPG+GKTT+A  +A E  + 
Sbjct: 7   FRPQNLDEVVGQERIVT---FFRNLGKSDISKWPHVIFYGPPGVGKTTMAHAIANEYDIE 63

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDF 132
               +     K  D+   + ++         R +LF+DE   L+   + +L   MED+
Sbjct: 64  IIDMNASQYRKIDDMENQIFSIVKQIPEKGARKILFMDEADALTPNSQWLLRRMMEDY 121


>gi|224045116|ref|XP_002197546.1| PREDICTED: Werner helicase interacting protein 1 [Taeniopygia
           guttata]
          Length = 632

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 77/151 (50%), Gaps = 21/151 (13%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75
           LRP TL  + GQ   + A + L+  +E+ +     +  ++  GPPG GKTTLA ++A   
Sbjct: 196 LRPDTLGSYVGQERVLGAQTLLRSLLESHE-----IPSLILWGPPGCGKTTLAHIIANSS 250

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPA 128
           ++ G+ F + S    AK  D+  +++  ++       + +LFIDEIHR +   ++   P 
Sbjct: 251 KKNGMRFVTLSA-TSAKTNDVRDVISQAQNEKRLFKRKTILFIDEIHRFNKSQQDTFLPH 309

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLI 157
           +E   + L+    E PS +     LSR  +I
Sbjct: 310 VECGTVTLIGATTENPSFQVNAALLSRCRVI 340


>gi|197104728|ref|YP_002130105.1| ATPase, AAA family [Phenylobacterium zucineum HLK1]
 gi|196478148|gb|ACG77676.1| ATPase, AAA family [Phenylobacterium zucineum HLK1]
          Length = 434

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 56/116 (48%), Gaps = 9/116 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ LEE  GQ             A+AR   L  ++  GPPG GKTT+A+++A+E G  
Sbjct: 22  LRPQRLEEVVGQDHLLGPDGPIRRMAEARR--LSSMILWGPPGTGKTTIARLLAKEAGYE 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMED 131
           F+  S  V +   DL                 +LF+DEIHR +   ++   P +E+
Sbjct: 80  FQQLSA-VFSGVADLKKAFEQARARRAAGQATLLFVDEIHRFNRAQQDGFLPFVEE 134


>gi|186475407|ref|YP_001856877.1| recombination factor protein RarA [Burkholderia phymatum STM815]
 gi|184191866|gb|ACC69831.1| AAA ATPase central domain protein [Burkholderia phymatum STM815]
          Length = 453

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 101/232 (43%), Gaps = 56/232 (24%)

Query: 2   MDREGLL--SRNVSQED------ADISL---LRPRTLEEFTGQVE---ACSNLKVFIEAA 47
           M R+GL   SR+  Q        A++ L   LRPRT++E  GQ         L+V  E+ 
Sbjct: 1   MHRDGLYPKSRDYPQNAMFEETRANVPLAERLRPRTIDEVIGQKHLLGPNKPLRVAFESG 60

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPV-----IAKAGDLAALLTN 102
           +A +     ++  GPPG+GKTTLA+++A      F + S  +     I +A + A +   
Sbjct: 61  EAHS-----MILWGPPGVGKTTLARLMADAFHAQFIALSAVLSGVKDIREAVETAQIHRA 115

Query: 103 LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTR 162
              + ++F+DE+HR +   ++   P +E                       F  + ATT 
Sbjct: 116 NGHQTLVFVDEVHRFNKSQQDAFLPHVES--------------------GLFVFVGATTE 155

Query: 163 VGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQR------GAKLTGLAVTDEA 207
                NP  +    +  R + Y ++ L T  QR        +L GL +TDEA
Sbjct: 156 -----NPSFEVNSALLSRASVYVLKSLDTDEQRELLARAQQELGGLTLTDEA 202


>gi|329298237|ref|ZP_08255573.1| recombination factor protein RarA [Plautia stali symbiont]
          Length = 448

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 81/167 (48%), Gaps = 20/167 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP TL+++ GQ   + A   L   IEA +     L  ++  GPPG GKTTLA+++A   
Sbjct: 21  IRPATLQQYIGQQHLLAAGKPLPRAIEAGQ-----LHSMILWGPPGTGKTTLAEIIAHYG 75

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             +       TSG   I +A + A     +  R +LF+DE+HR +   ++   P +ED  
Sbjct: 76  KADVERISAVTSGVKEIREAIERARQNRQVGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 135

Query: 134 LDLM--VGEGPS--ARSVKINLSRFTLIAATTRVGL---LTNPLQDR 173
           +  +    E PS    S  ++ +R  L+ + T   +   L   +QD+
Sbjct: 136 ITFIGATTENPSFELNSALLSRARVYLLKSLTSADIEQVLDQAMQDK 182


>gi|302038840|ref|YP_003799162.1| replication-associated recombination protein A [Candidatus
           Nitrospira defluvii]
 gi|300606904|emb|CBK43237.1| Replication-associated recombination protein A [Candidatus
           Nitrospira defluvii]
          Length = 429

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 67/144 (46%), Gaps = 11/144 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR+ ++  GQ E     +    A +   + L  V+F GPPG GKTTLA +VA+     
Sbjct: 29  MRPRSFDDLVGQDEVVGPGRPLRNAIER--DQLSSVIFWGPPGCGKTTLAGLVAQHTESQ 86

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F   S  V     +L  ++   E R        LF+DEIHR +   ++   P +E   + 
Sbjct: 87  FVPFSA-VTGGIPELREIIKAAEHRRAMGRATTLFVDEIHRFNKAQQDAFLPHVERGTVV 145

Query: 136 LM--VGEGPSARSVKINLSRFTLI 157
           L+    E PS   +   LSR  ++
Sbjct: 146 LIGATTENPSFELIAPLLSRSIVV 169


>gi|257870864|ref|ZP_05650517.1| AAA ATPase [Enterococcus gallinarum EG2]
 gi|257805028|gb|EEV33850.1| AAA ATPase [Enterococcus gallinarum EG2]
          Length = 425

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 4/130 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR L+E  GQ       K+     +A+   L  ++  GPPG GKT++A  +A      
Sbjct: 9   MRPRNLDEVVGQQHLVGPGKIIRRMVEAKM--LSSMILYGPPGTGKTSIASAIAGSTRYA 66

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR  +     K    + A    +    +L +DE+HRL    ++ L P +E  ++ +M+G 
Sbjct: 67  FRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEVHRLDKTKQDFLLPHLESGKI-IMIGA 125

Query: 141 GPSARSVKIN 150
                 + IN
Sbjct: 126 TTENPYITIN 135


>gi|225011635|ref|ZP_03702073.1| AAA ATPase central domain protein [Flavobacteria bacterium
           MS024-2A]
 gi|225004138|gb|EEG42110.1| AAA ATPase central domain protein [Flavobacteria bacterium
           MS024-2A]
          Length = 425

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 69/154 (44%), Gaps = 21/154 (13%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP++L E+ GQ   V    +L   I            ++F GPPG GKTTLAQ++A E 
Sbjct: 9   MRPKSLGEYFGQDHLVGPKGSLTQMISNG-----VFPSLIFWGPPGTGKTTLAQLLALEK 63

Query: 79  GVNFRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
              F   S           +I+KA     L +      +LFIDEIHR S   ++ L  A+
Sbjct: 64  ERPFYQLSAINAGVKEIREIISKAEHSGGLFSG--KSPILFIDEIHRFSKSQQDSLLNAV 121

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATT 161
           E   + L+    E PS   +   LSR  +    T
Sbjct: 122 EKGIITLIGATTENPSFEVINALLSRCQVYVLNT 155


>gi|146416793|ref|XP_001484366.1| hypothetical protein PGUG_03747 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 572

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 61/128 (47%), Gaps = 23/128 (17%)

Query: 21  LLRPRTLEEFTGQVEACSN----LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           L+RP +L ++ GQ    ++    +  FI     R   L  ++  GPPG+GKTTLA ++A+
Sbjct: 89  LVRPSSLHQYIGQNHLTNHRNGAITNFI-----RLGYLPSMILHGPPGVGKTTLASIIAK 143

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED-------------RDVLFIDEIHRLSIIVEE 123
           E G      S    A    +  LL  + D             R  +FIDEIHR S + ++
Sbjct: 144 EAGYVMVELSA-TDATVSTIRRLLNEIRDENRKRTKLGTPHLRVCVFIDEIHRFSKVQQD 202

Query: 124 ILYPAMED 131
            L P +E+
Sbjct: 203 FLLPFVEE 210


>gi|228935720|ref|ZP_04098533.1| hypothetical protein bthur0009_41650 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228823958|gb|EEM69777.1| hypothetical protein bthur0009_41650 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 428

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 86/330 (26%), Positives = 129/330 (39%), Gaps = 65/330 (19%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  ++E  GQ       K+     +A       ++  GPPG GKT++A  +A   G  
Sbjct: 9   MRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAIAGSTGTP 66

Query: 82  FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
           FR  +  V     D+  ++    +    VL +DE+HRL    ++ L P +E   L     
Sbjct: 67  FRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLL----- 120

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEI-----EDLKTIVQ 193
                          TLI ATT     +NP       I  R   +E+     EDL   ++
Sbjct: 121 ---------------TLIGATT-----SNPFHAINSAIRSRCQIFELHALTEEDLLIGLK 160

Query: 194 RG--AKLTGLA-----VTDEAACEIAMRSRGTPRIAGRLLRR--VRDFAEVAHAKTITRE 244
           R    K  GL      VT EA    A  S G  R A   L    +  F     A  IT E
Sbjct: 161 RALEDKEKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLE 220

Query: 245 IADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           IA+  L + +   DK G    D+  L+   ++  G  V              A+  L   
Sbjct: 221 IAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDVNA------------ALHYLAR- 265

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
            +I+ G +Q    GR L+ +A++ +G+  P
Sbjct: 266 -LIEAGDLQSI--GRRLLIMAYEDIGLASP 292


>gi|262377125|ref|ZP_06070350.1| recombination factor protein RarA [Acinetobacter lwoffii SH145]
 gi|262307863|gb|EEY89001.1| recombination factor protein RarA [Acinetobacter lwoffii SH145]
          Length = 424

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 80/170 (47%), Gaps = 32/170 (18%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPR L +  GQ         L+  I+        L  ++F GPPG+GKTT+A ++A+ +
Sbjct: 12  LRPRDLTQIIGQEHLLGEQAPLRQMIDQGH-----LPSIIFWGPPGVGKTTIALLLAQAV 66

Query: 79  GVNFRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
              F S S           +IA+ GD   LLT      V+FIDEIHR +   ++ L  A+
Sbjct: 67  DRPFISLSALNTGVKELREIIAEGGD---LLT-----PVVFIDEIHRFNKSQQDALLNAV 118

Query: 130 EDFQLDLM--VGEGPSARSVKINLSR-----FTLIAATTRVGLLTNPLQD 172
           E  ++ L+    E PS       LSR        ++A +   LLT  LQ+
Sbjct: 119 EKGKITLIGATTENPSFEVNSALLSRCQVYSLNALSAESIQTLLTQALQN 168


>gi|319776840|ref|YP_004136491.1| holliday junction ATP-dependent DNA helicase ruvb [Mycoplasma
           fermentans M64]
 gi|319776967|ref|YP_004136618.1| holliday junction ATP-dependent DNA helicase ruvb [Mycoplasma
           fermentans M64]
 gi|319777201|ref|YP_004136852.1| holliday junction ATP-dependent DNA helicase ruvb [Mycoplasma
           fermentans M64]
 gi|238809748|dbj|BAH69538.1| hypothetical protein [Mycoplasma fermentans PG18]
 gi|318037915|gb|ADV34114.1| Holliday junction ATP-dependent DNA helicase RuvB [Mycoplasma
           fermentans M64]
 gi|318038042|gb|ADV34241.1| Holliday junction ATP-dependent DNA helicase ruvB [Mycoplasma
           fermentans M64]
 gi|318038276|gb|ADV34475.1| Holliday junction ATP-dependent DNA helicase RuvB [Mycoplasma
           fermentans M64]
          Length = 235

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/216 (20%), Positives = 95/216 (43%), Gaps = 7/216 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           L P   +EF GQ +   +L + ++ +K     + +++FV P G GK +LA ++++    +
Sbjct: 4   LTPINFKEFRGQKDLIKSLIILLQESKK----IPNMIFVAPKGYGKYSLANIISQFKDRS 59

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            +  +   I    +L  +L NL++  +LFI++I++L   ++++L+       LD +    
Sbjct: 60  LQPITSNNIVDEFELLNILANLKNNAILFIEDINKLKPELKKLLFDIYNSINLDKVEKIC 119

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            S +  KI    F++I        + +   + F I   L  Y + +L  I+      T  
Sbjct: 120 YSNKRFKI--KNFSIIGTINSSNQIDSSKWEGFKI-FNLKKYSLNNLNQIINYNRLKTNF 176

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            + +     I       P I   +  +  D+  + +
Sbjct: 177 KLGNSLVEYILNNCNNNPGILNEVYLKAIDYFAIKN 212


>gi|49481747|ref|YP_038449.1| recombination factor protein RarA [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|196034307|ref|ZP_03101716.1| ATPase, AAA family [Bacillus cereus W]
 gi|196039170|ref|ZP_03106476.1| ATPase, AAA family [Bacillus cereus NVH0597-99]
 gi|49333303|gb|AAT63949.1| ATPase, AAA family [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|195992849|gb|EDX56808.1| ATPase, AAA family [Bacillus cereus W]
 gi|196029797|gb|EDX68398.1| ATPase, AAA family [Bacillus cereus NVH0597-99]
          Length = 428

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 86/330 (26%), Positives = 129/330 (39%), Gaps = 65/330 (19%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  ++E  GQ       K+     +A       ++  GPPG GKT++A  +A   G  
Sbjct: 9   MRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAIAGSTGTP 66

Query: 82  FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
           FR  +  V     D+  ++    +    VL +DE+HRL    ++ L P +E   L     
Sbjct: 67  FRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLL----- 120

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEI-----EDLKTIVQ 193
                          TLI ATT     +NP       I  R   +E+     EDL   ++
Sbjct: 121 ---------------TLIGATT-----SNPFHAINSAIRSRCQIFELHALTEEDLLIGLK 160

Query: 194 RG--AKLTGLA-----VTDEAACEIAMRSRGTPRIAGRLLRR--VRDFAEVAHAKTITRE 244
           R    K  GL      VT EA    A  S G  R A   L    +  F     A  IT E
Sbjct: 161 RALEDKEKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLE 220

Query: 245 IADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           IA+  L + +   DK G    D+  L+   ++  G  V              A+  L   
Sbjct: 221 IAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDVNA------------ALHYLAR- 265

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
            +I+ G +Q    GR L+ +A++ +G+  P
Sbjct: 266 -LIEAGDLQSI--GRRLLIMAYEDIGLASP 292


>gi|50086546|ref|YP_048056.1| recombination factor protein RarA [Acinetobacter sp. ADP1]
 gi|49532520|emb|CAG70234.1| putative ATPase [Acinetobacter sp. ADP1]
          Length = 423

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 73/146 (50%), Gaps = 27/146 (18%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPR L E  GQ   +   + L+  I+        L  ++F GPPG+GKTT+A ++A+ +
Sbjct: 12  LRPRDLSEIIGQDHLLGEHAPLRQMIDQGH-----LPSIIFWGPPGVGKTTIALLLAQAV 66

Query: 79  GVNFRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
              F S S           +IA++GD   LLT      V+FIDEIHR +   ++ L  A+
Sbjct: 67  DRPFVSLSALNTGVKELREIIAESGD---LLT-----PVVFIDEIHRFNKSQQDALLNAV 118

Query: 130 EDFQLDLM--VGEGPSARSVKINLSR 153
           E  ++ L+    E PS       LSR
Sbjct: 119 EKGKITLIGATTENPSFEVNSALLSR 144


>gi|315225697|ref|ZP_07867504.1| replication-associated recombination protein A [Capnocytophaga
           ochracea F0287]
 gi|314944360|gb|EFS96402.1| replication-associated recombination protein A [Capnocytophaga
           ochracea F0287]
          Length = 426

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 67/146 (45%), Gaps = 21/146 (14%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP +L ++ GQ   V A   L+  IE        L   +F GPPG GKTTLA ++A + 
Sbjct: 9   MRPTSLAQYVGQEHLVGAQGALRQQIERG-----LLPSFIFWGPPGTGKTTLANIIAHQS 63

Query: 79  GVNFRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
              F + S           VI ++     L T      ++FIDEIHR +   ++ L  A+
Sbjct: 64  NRAFYTLSAISSGIKEVREVIDQSKQSGGLFTT--QNPIVFIDEIHRFNKTQQDSLLQAV 121

Query: 130 EDFQLDLM--VGEGPSARSVKINLSR 153
           E   + L+    E PS   +   LSR
Sbjct: 122 EKGWITLIGATTENPSFEVIPALLSR 147


>gi|295100781|emb|CBK98326.1| Recombination protein MgsA [Faecalibacterium prausnitzii L2-6]
          Length = 424

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 72/146 (49%), Gaps = 16/146 (10%)

Query: 22  LRPRTLEEFTGQVEACSNLKVF---IEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL +  GQ    +  +VF   IE+ +     + +++F GP G GKTT+A+++A   
Sbjct: 9   LRPKTLADVCGQQHLLAEGQVFRRTIESGR-----IPNMIFYGPSGTGKTTVARIIAENS 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRD-----VLFIDEIHRLSIIVEEILYPAMEDFQ 133
           G+     +G      GD+ A+L ++         +L++DEI  L+   ++ L   +ED  
Sbjct: 64  GMTLHKLNGTSCG-TGDIKAVLKDIGTLAGAGGILLYLDEIQYLNKKQQQSLLECIEDGS 122

Query: 134 LDLMVG--EGPSARSVKINLSRFTLI 157
           + L+    E P        LSR T+ 
Sbjct: 123 VTLIASTTENPYFYIYNALLSRCTVF 148


>gi|291409441|ref|XP_002721014.1| PREDICTED: Werner helicase interacting protein [Oryctolagus
           cuniculus]
          Length = 589

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 74/151 (49%), Gaps = 21/151 (13%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75
           +RP +L+++ GQ  A      L+  +E  +     +  ++  GPPG GKTTLA ++A   
Sbjct: 155 MRPESLQDYIGQSRAVGQETLLRSLLETNE-----IPSLILWGPPGCGKTTLAHIIANNS 209

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPA 128
           ++  + F + S    AK  D+  ++   ++       + +LFIDEIHR +   ++   P 
Sbjct: 210 KKHSIRFVTLSA-TNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPH 268

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLI 157
           +E   + L+    E PS +     LSR  +I
Sbjct: 269 VECGTITLIGATTENPSFQVNAALLSRCRVI 299


>gi|119774909|ref|YP_927649.1| recombination factor protein RarA [Shewanella amazonensis SB2B]
 gi|119767409|gb|ABL99979.1| Recombination protein MgsA [Shewanella amazonensis SB2B]
          Length = 442

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 67/136 (49%), Gaps = 11/136 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP ++EE+ GQ       K   +A    A  +  +L  GPPG GKTTLA++VAR    +
Sbjct: 18  MRPASVEEYIGQSHLLGEGKPLRQAL--LAGKVHSMLLWGPPGTGKTTLAELVARYANAH 75

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
               S  V +   ++ A +   ++       R +LF+DE+HR +   ++   P +ED  +
Sbjct: 76  VERISA-VTSGVKEIRAAIEQAKNVAQSRGQRTLLFVDEVHRFNKSQQDAFLPFIEDGTV 134

Query: 135 DLMVGEGPSARSVKIN 150
            + +G      S ++N
Sbjct: 135 -IFIGATTENPSFEVN 149


>gi|228477966|ref|ZP_04062577.1| recombination factor protein RarA [Streptococcus salivarius SK126]
 gi|228250146|gb|EEK09399.1| recombination factor protein RarA [Streptococcus salivarius SK126]
          Length = 422

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRT+ E  GQ       K+     +A    L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPRTISEVIGQKHLVGEGKIIRRMVEANM--LSSMILYGPPGIGKTSIASAIAGTTKFA 66

Query: 82  FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +  V +K       + A     L    VL +DEIHRL    ++ L P +E+  + +
Sbjct: 67  FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKAKQDFLLPLLENGNI-I 121

Query: 137 MVG 139
           M+G
Sbjct: 122 MIG 124


>gi|238485976|ref|XP_002374226.1| AAA family ATPase, putative [Aspergillus flavus NRRL3357]
 gi|220699105|gb|EED55444.1| AAA family ATPase, putative [Aspergillus flavus NRRL3357]
          Length = 527

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 110/263 (41%), Gaps = 52/263 (19%)

Query: 22  LRPRTLEEFTGQ--VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +RPRTL++  GQ  V     L+  IE  +  +     ++  G PG GKTT+A+V+A  +G
Sbjct: 120 MRPRTLDDVCGQDLVGPHGVLRGLIEHDRVPS-----MILWGGPGTGKTTIARVIASMVG 174

Query: 80  VNF----RSTSGPVIAKA--GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             F     ++SG    K    D  + L     + ++F DEIHR S   +++    +E  Q
Sbjct: 175 SRFVEINSTSSGVAECKKIFSDAKSELNLTGRKTIIFCDEIHRFSKSQQDVFLGPVESGQ 234

Query: 134 LDLM--VGEGPSARSVKINLSR---FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + L+    E PS +     LSR   FTL   T                         ED+
Sbjct: 235 VTLIGATTENPSFKVQNALLSRCRTFTLAKLTD------------------------EDV 270

Query: 189 KTIVQRGAKLTG------LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           K+I+ R  ++ G        V DE    +A  S G  R +  LL    D ++      IT
Sbjct: 271 KSILDRALQVEGPNYSPSALVDDELINYLAKFSDGDARTSLNLLELAMDLSK---RPGIT 327

Query: 243 REIADAALLR-LAIDKMGFDQLD 264
           +E    +L + L  D+ G    D
Sbjct: 328 KEELKRSLTKTLVYDRAGDQHYD 350


>gi|72162480|ref|YP_290137.1| recombination factor protein RarA [Thermobifida fusca YX]
 gi|71916212|gb|AAZ56114.1| Recombination protein MgsA [Thermobifida fusca YX]
          Length = 441

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 63/130 (48%), Gaps = 36/130 (27%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL+E  GQ   +   S L+  +E     A     +L  GPPG GKTTLA VV+R  
Sbjct: 24  MRPRTLDEVVGQRHLLGEGSPLRRLVEDDAPMA-----LLLWGPPGTGKTTLATVVSRAT 78

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED-RDV----------------LFIDEIHRLSIIV 121
              F            +L+A+ + ++D RDV                LF+DE+HR S   
Sbjct: 79  RRRFV-----------ELSAVTSGVKDIRDVVDEARRELGMRGVHTLLFVDEVHRFSKTQ 127

Query: 122 EEILYPAMED 131
           ++ L PA+E+
Sbjct: 128 QDALLPAVEN 137


>gi|167464003|ref|ZP_02329092.1| recombination factor protein RarA [Paenibacillus larvae subsp.
           larvae BRL-230010]
 gi|322382959|ref|ZP_08056791.1| RarA-like protein [Paenibacillus larvae subsp. larvae B-3650]
 gi|321153079|gb|EFX45537.1| RarA-like protein [Paenibacillus larvae subsp. larvae B-3650]
          Length = 434

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 14/118 (11%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  L+E+ GQ       K+   A +A  + +  +L  GPPG GKTTLA ++++     
Sbjct: 21  MRPTGLDEYIGQEHIVGPGKLLRRAIEA--DQVTSILLYGPPGTGKTTLANIISKRTQGQ 78

Query: 82  FRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           F   +           VI +A    AL      + +LF+DE+HR +   ++ L PA+E
Sbjct: 79  FVKLNAVDASVKDVREVIEQAKQTKALYGR---KTILFLDEVHRFNSARQDALLPAVE 133


>gi|261344311|ref|ZP_05971955.1| replication-associated recombination protein A [Providencia
           rustigianii DSM 4541]
 gi|282567915|gb|EFB73450.1| replication-associated recombination protein A [Providencia
           rustigianii DSM 4541]
          Length = 447

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 71/147 (48%), Gaps = 11/147 (7%)

Query: 6   GLLSRNVSQEDAD--ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           G LS + SQ +     + +RP +LE++ GQ    +  K    A KA    L  ++  GPP
Sbjct: 2   GNLSLDFSQNEFQPLAARMRPESLEQYIGQKHLLAQGKPLPRAIKA--GHLHSMILWGPP 59

Query: 64  GLGKTTLAQVVARELGVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
           G GKTTLA+++      +       TSG   I ++ + A    +   R +LF+DE+HR +
Sbjct: 60  GTGKTTLAEIIGHYAQADIERLSAVTSGIKEIRESIEKARQNLSAGRRTILFVDEVHRFN 119

Query: 119 IIVEEILYPAMEDFQLDLM--VGEGPS 143
              ++   P +ED  +  +    E PS
Sbjct: 120 KSQQDAFLPHIEDGTITFIGATTENPS 146


>gi|319638052|ref|ZP_07992816.1| hypothetical protein HMPREF0604_00439 [Neisseria mucosa C102]
 gi|317400697|gb|EFV81354.1| hypothetical protein HMPREF0604_00439 [Neisseria mucosa C102]
          Length = 435

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 66/143 (46%), Gaps = 17/143 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP +L++  GQ   +     L+V +E  K  +     +L  GPPG+GKTTLA+++A+  
Sbjct: 17  LRPHSLDDVIGQQHLIGEGKPLRVAVEGGKPHS-----MLLWGPPGVGKTTLARILAQSF 71

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
              F   S  V +   D+   +   E         +LF+DE+HR +   ++   P +E  
Sbjct: 72  NAQFLPVSA-VFSGVKDIREAIEKAEIALQQGQATILFVDEVHRFNKAQQDAFLPYVESG 130

Query: 133 QLDLM--VGEGPSARSVKINLSR 153
            L  +    E PS       LSR
Sbjct: 131 LLTFIGATTENPSFEVNPALLSR 153


>gi|323135882|ref|ZP_08070965.1| AAA ATPase central domain protein [Methylocystis sp. ATCC 49242]
 gi|322398973|gb|EFY01492.1| AAA ATPase central domain protein [Methylocystis sp. ATCC 49242]
          Length = 436

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 62/132 (46%), Gaps = 15/132 (11%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKAR---AEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP  L+E  GQ           EAA  R   A +L  ++F GPPG GKTT+A+++A E 
Sbjct: 22  LRPARLDEVAGQDHLLGP-----EAALTRLIRAGSLGSLIFWGPPGTGKTTVARLLAHET 76

Query: 79  GVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
            + F   S        + K  D A          +LF+DEIHR +   ++   P MED  
Sbjct: 77  KLAFVQISAIFSGVADLKKTFDAARARRAAGQGTLLFVDEIHRFNRAQQDSFLPVMEDGT 136

Query: 134 LDLM--VGEGPS 143
           + L+    E PS
Sbjct: 137 ITLIGATTENPS 148


>gi|291616896|ref|YP_003519638.1| YcaJ [Pantoea ananatis LMG 20103]
 gi|291151926|gb|ADD76510.1| YcaJ [Pantoea ananatis LMG 20103]
          Length = 455

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 70/150 (46%), Gaps = 17/150 (11%)

Query: 6   GLLSRNVSQEDAD--ISLLRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFV 60
           G LS + S ED     + +RP TL+ + GQ   + A   L   IEA       L  ++  
Sbjct: 10  GNLSLDFSSEDFKPLAARMRPETLKHYIGQQHLLAAGKPLPRAIEAGH-----LHSMILW 64

Query: 61  GPPGLGKTTLAQVVARELGVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIH 115
           GPPG GKTTLA+++A     +       TSG   I +A + A L      R +LF+DE+H
Sbjct: 65  GPPGTGKTTLAEIIAHYGNADVERISAVTSGVKEIREAIERARLSKQAGRRTILFVDEVH 124

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPS 143
           R +      L  A ED  +  +    E PS
Sbjct: 125 RFNKKSAGCLPAAHEDGTITFIGATTENPS 154


>gi|163786201|ref|ZP_02180649.1| ATPase, AAA family protein [Flavobacteriales bacterium ALC-1]
 gi|159878061|gb|EDP72117.1| ATPase, AAA family protein [Flavobacteriales bacterium ALC-1]
          Length = 425

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 68/151 (45%), Gaps = 18/151 (11%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L ++  Q        +  +  K+    +  ++  GPPG+GKTTLA ++A E    
Sbjct: 9   LRPKILNDYLSQQHLVGKDGMLYQQIKSGV--IPSLILWGPPGIGKTTLANIIANESERP 66

Query: 82  FRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           F   S           VI KA     L T      +LFIDEIHR S   ++ L  A+E  
Sbjct: 67  FFKLSAINSGVKDIREVIDKAKKSGGLFT--AKNPILFIDEIHRFSKSQQDSLLEAVEKG 124

Query: 133 QLDLM--VGEGPSARSVKINLSR---FTLIA 158
            + L+    E PS   +   LSR   +TL A
Sbjct: 125 WVTLIGATTENPSFEVISALLSRCQVYTLNA 155


>gi|33239543|ref|NP_874485.1| recombination factor protein RarA [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|33237068|gb|AAP99137.1| ATPase [Prochlorococcus marinus subsp. marinus str. CCMP1375]
          Length = 446

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 64/120 (53%), Gaps = 16/120 (13%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP  ++EF GQ    +  ++   A +A  + + +++F GPPG+GKTTLA+++A     N
Sbjct: 24  LRPTKIDEFVGQDAILAEGRLLRRAIEA--DRVGNLIFHGPPGVGKTTLAKIIA----AN 77

Query: 82  FRSTSGPVIAKAGDLAALLTNLED----------RDVLFIDEIHRLSIIVEEILYPAMED 131
            RS    + A    +  +   +ED          + +LF+DE+HR +   ++ L P +E+
Sbjct: 78  TRSYFSVLNAVLVGVKEIRKEVEDARERLGRYGLKTILFLDEVHRFNSAQQDALLPWVEN 137


>gi|329123991|ref|ZP_08252538.1| replication-associated recombination protein A [Haemophilus
           aegyptius ATCC 11116]
 gi|327467416|gb|EGF12914.1| replication-associated recombination protein A [Haemophilus
           aegyptius ATCC 11116]
          Length = 446

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 7/115 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  LE++ GQ       K   +A +A    +  ++  GPPG GKTTLA+++A+ +   
Sbjct: 20  MRPTNLEQYFGQSHLIGEGKPLRKAIQA--GHIHSMILWGPPGTGKTTLAEIIAQRINAE 77

Query: 82  FRS----TSGPVIAKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMED 131
                  TSG    +     A    L DR  +LF+DE+HR +   ++   P +ED
Sbjct: 78  VERISAVTSGIKEIREAIERAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIED 132


>gi|150401734|ref|YP_001325500.1| replication factor C small subunit [Methanococcus aeolicus
          Nankai-3]
 gi|150014437|gb|ABR56888.1| Replication factor C [Methanococcus aeolicus Nankai-3]
          Length = 940

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 5/60 (8%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          +   RP+TL E TG     + LK ++E      E+L H+LF GPPGLGKTT A  +A++L
Sbjct: 6  VEKYRPKTLNEITGHDAIITRLKNYVEK-----ESLPHMLFSGPPGLGKTTSALCLAKDL 60


>gi|30264469|ref|NP_846846.1| recombination factor protein RarA [Bacillus anthracis str. Ames]
 gi|47529927|ref|YP_021276.1| recombination factor protein RarA [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49187290|ref|YP_030542.1| recombination factor protein RarA [Bacillus anthracis str. Sterne]
 gi|65321766|ref|ZP_00394725.1| COG2256: ATPase related to the helicase subunit of the Holliday
           junction resolvase [Bacillus anthracis str. A2012]
 gi|167636495|ref|ZP_02394792.1| ATPase, AAA family [Bacillus anthracis str. A0442]
 gi|167638625|ref|ZP_02396901.1| ATPase, AAA family [Bacillus anthracis str. A0193]
 gi|170689631|ref|ZP_02880813.1| ATPase, AAA family [Bacillus anthracis str. A0465]
 gi|177653256|ref|ZP_02935508.1| ATPase, AAA family [Bacillus anthracis str. A0174]
 gi|190566921|ref|ZP_03019837.1| ATPase, AAA family [Bacillus anthracis Tsiankovskii-I]
 gi|227817178|ref|YP_002817187.1| ATPase, AAA family [Bacillus anthracis str. CDC 684]
 gi|229603735|ref|YP_002868686.1| ATPase, AAA family [Bacillus anthracis str. A0248]
 gi|254684155|ref|ZP_05148015.1| recombination factor protein RarA [Bacillus anthracis str.
           CNEVA-9066]
 gi|254724674|ref|ZP_05186457.1| recombination factor protein RarA [Bacillus anthracis str. A1055]
 gi|254736502|ref|ZP_05194208.1| recombination factor protein RarA [Bacillus anthracis str. Western
           North America USA6153]
 gi|254741540|ref|ZP_05199227.1| recombination factor protein RarA [Bacillus anthracis str. Kruger
           B]
 gi|254751361|ref|ZP_05203398.1| recombination factor protein RarA [Bacillus anthracis str. Vollum]
 gi|254757693|ref|ZP_05209720.1| recombination factor protein RarA [Bacillus anthracis str.
           Australia 94]
 gi|30259127|gb|AAP28332.1| ATPase, AAA family [Bacillus anthracis str. Ames]
 gi|47505075|gb|AAT33751.1| ATPase, AAA family [Bacillus anthracis str. 'Ames Ancestor']
 gi|49181217|gb|AAT56593.1| ATPase, AAA family [Bacillus anthracis str. Sterne]
 gi|167513473|gb|EDR88843.1| ATPase, AAA family [Bacillus anthracis str. A0193]
 gi|167528088|gb|EDR90885.1| ATPase, AAA family [Bacillus anthracis str. A0442]
 gi|170666401|gb|EDT17182.1| ATPase, AAA family [Bacillus anthracis str. A0465]
 gi|172081538|gb|EDT66610.1| ATPase, AAA family [Bacillus anthracis str. A0174]
 gi|190561912|gb|EDV15881.1| ATPase, AAA family [Bacillus anthracis Tsiankovskii-I]
 gi|227006926|gb|ACP16669.1| ATPase, AAA family [Bacillus anthracis str. CDC 684]
 gi|229268143|gb|ACQ49780.1| ATPase, AAA family [Bacillus anthracis str. A0248]
          Length = 428

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 86/330 (26%), Positives = 129/330 (39%), Gaps = 65/330 (19%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  ++E  GQ       K+     +A       ++  GPPG GKT++A  +A   G  
Sbjct: 9   MRPTNIQEVIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAIAGSTGTP 66

Query: 82  FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
           FR  +  V     D+  ++    +    VL +DE+HRL    ++ L P +E   L     
Sbjct: 67  FRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLL----- 120

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEI-----EDLKTIVQ 193
                          TLI ATT     +NP       I  R   +E+     EDL   ++
Sbjct: 121 ---------------TLIGATT-----SNPFHAINSAIRSRCQIFELHALTEEDLLIGLK 160

Query: 194 RG--AKLTGLA-----VTDEAACEIAMRSRGTPRIAGRLLRR--VRDFAEVAHAKTITRE 244
           R    K  GL      VT EA    A  S G  R A   L    +  F     A  IT E
Sbjct: 161 RALEDKEKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLE 220

Query: 245 IADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           IA+  L + +   DK G    D+  L+   ++  G  V              A+  L   
Sbjct: 221 IAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDVNA------------ALHYLAR- 265

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
            +I+ G +Q    GR L+ +A++ +G+  P
Sbjct: 266 -LIEAGDLQSI--GRRLLIMAYEDIGLASP 292


>gi|238809646|dbj|BAH69436.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 225

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 56/109 (51%), Gaps = 9/109 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRTL++  GQ    S LK   E  K +A      +F G  G GK++ A  +A +L + 
Sbjct: 8   IRPRTLDDIVGQKHVVSLLK---EIVKNKAST--SFIFFGESGTGKSSAAVALANDLKLK 62

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           +    G   A   +   L+  ++  D++ IDEIHRL+   ++IL   +E
Sbjct: 63  Y----GYFNATINNKDELVNTIQTNDIIIIDEIHRLNKDKQDILLSYLE 107


>gi|332288542|ref|YP_004419394.1| recombination factor protein RarA [Gallibacterium anatis UMN179]
 gi|330431438|gb|AEC16497.1| recombination factor protein RarA [Gallibacterium anatis UMN179]
          Length = 445

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 120/266 (45%), Gaps = 41/266 (15%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG-- 79
           +RP +L+ + GQ    S  K   +A ++    +  ++F GPPG GKTTLA+++A  L   
Sbjct: 20  MRPTSLDNYFGQSHLVSKGKPLRKAIESGN--IHSMIFWGPPGTGKTTLAEIIAHRLNAK 77

Query: 80  VNFRS--TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           V + S  TSG   I +A + A        + +LF+DE+HR +   ++   P +ED  + +
Sbjct: 78  VEYLSAVTSGVKEIREAIERAKQNQFAGQQTLLFVDEVHRFNKSQQDAFLPYIEDGTI-I 136

Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI-EDLKTIVQRG 195
            +G      S ++N    + + +  RV LL +           LN  EI E L+  +Q  
Sbjct: 137 FIGATTENPSFELN----SALLSRARVYLLKS-----------LNIDEIVEVLQRALQDK 181

Query: 196 AKLTG---LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA-EVAHAKTITREIADAALL 251
               G   + + D     +A    G  R+A   L  + D A E    K +T++       
Sbjct: 182 QFGYGNQIINLEDGLLAMLAEYVNGDARLALNCLELMVDMAEETPKGKLLTKQ------- 234

Query: 252 RLAIDKMG-----FDQLDLRYLTMIA 272
            L +D +G     FD+   RY  +I+
Sbjct: 235 -LLVDTLGERQAHFDKQGDRYYDLIS 259


>gi|229175073|ref|ZP_04302591.1| hypothetical protein bcere0006_41550 [Bacillus cereus MM3]
 gi|228608441|gb|EEK65745.1| hypothetical protein bcere0006_41550 [Bacillus cereus MM3]
          Length = 428

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 85/330 (25%), Positives = 129/330 (39%), Gaps = 65/330 (19%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  ++E  GQ       K+     +A       ++  GPPG GKT++A  +A   G  
Sbjct: 9   MRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAIAGSTGTP 66

Query: 82  FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
           FR  +  V     D+  ++    +    VL +DE+HRL    ++ L P +E   L     
Sbjct: 67  FRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLL----- 120

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEI----ED-----LK 189
                          TLI ATT     +NP       I  R   +E+    ED     LK
Sbjct: 121 ---------------TLIGATT-----SNPFHAINSAIRSRCQIFELHALTEDDLLIGLK 160

Query: 190 TIVQRGAKLTG---LAVTDEAACEIAMRSRGTPRIAGRLLRR--VRDFAEVAHAKTITRE 244
             ++   K  G   + VT EA    A  S G  R A   L    +  F     A  IT E
Sbjct: 161 RALEDKEKGLGEYDVTVTSEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLE 220

Query: 245 IADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           IA+  L + +   DK G    D+  L+   ++  G  V              A+  L   
Sbjct: 221 IAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDVNA------------ALHYLAR- 265

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
            +I+ G +Q    GR L+ +A++ +G+  P
Sbjct: 266 -LIEAGDLQSI--GRRLLIMAYEDIGLASP 292


>gi|168308459|ref|ZP_02691134.1| ATPase, AAA family [Ureaplasma parvum serovar 1 str. ATCC 27813]
 gi|171902652|gb|EDT48941.1| ATPase, AAA family [Ureaplasma parvum serovar 1 str. ATCC 27813]
          Length = 408

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 53/84 (63%), Gaps = 3/84 (3%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRD--VLFIDE 113
           +++F GPPG+GK++LA+V+A++L V F +   PV+     L  ++    D +  ++ IDE
Sbjct: 42  NLIFYGPPGVGKSSLAKVLAQDLKVPF-AFFNPVVDSKKQLMQIIEQALDLNNFIIIIDE 100

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM 137
           IHRL+   ++IL P +E  ++ L 
Sbjct: 101 IHRLNKDKQDILLPIIEANKIKLF 124


>gi|68249823|ref|YP_248935.1| recombination factor protein RarA [Haemophilus influenzae 86-028NP]
 gi|68058022|gb|AAX88275.1| predicted ATPase related to the helicase subunit of the holliday
           junction resolvase [Haemophilus influenzae 86-028NP]
          Length = 446

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 59/115 (51%), Gaps = 7/115 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  LE++ GQ       K   +A +A    +  ++  GPPG GKTTLA+++A+ +   
Sbjct: 20  MRPTNLEQYFGQSHLIGEGKPLRKAIQA--GHIHSMILWGPPGTGKTTLAEIIAQRINAE 77

Query: 82  FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
                  TSG   I +A D A      + + +LF+DE+HR +   ++   P +ED
Sbjct: 78  VERISAVTSGIKEIREAIDRAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIED 132


>gi|328794088|ref|XP_001122859.2| PREDICTED: uncharacterized AAA domain-containing protein YrvN-like,
           partial [Apis mellifera]
          Length = 328

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 3/117 (2%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L E  GQ       K+     +A+   L  ++  GPPG+GKT++A  +A      
Sbjct: 8   MRPQNLNEVVGQQHLIGPGKIIRRMVEAKM--LSSMILYGPPGIGKTSIASAIAGSTKYA 65

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           FR  +    +K   +  A    L    +L +DEIHRL    ++ L P +E  Q+ L+
Sbjct: 66  FRQLNAATDSKKQLEQVAAEGKLSGTVILLLDEIHRLDKTKQDFLLPLLESGQIILI 122


>gi|326382142|ref|ZP_08203834.1| recombination factor protein RarA [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326198872|gb|EGD56054.1| recombination factor protein RarA [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 453

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 75/265 (28%), Positives = 125/265 (47%), Gaps = 53/265 (20%)

Query: 22  LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP +L+E  GQ       S L+  I  + A +     VL  GPPG GKTT+A ++++  
Sbjct: 31  MRPSSLDEIVGQQHLLGDRSPLRRLIAGSGAAS-----VLLYGPPGTGKTTMASLISQAT 85

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDF 132
           G  F + S  + A   ++ A++     R       VLFIDE+HR S   ++ L  A+E+ 
Sbjct: 86  GGRFEALSA-LSAGVKEVRAVIDVARRRLAQGQQTVLFIDEVHRFSKTQQDALLDAVEN- 143

Query: 133 QLDLMVG---EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           ++ L+V    E PS          F+++A          PL  R  + ++L     ED++
Sbjct: 144 RIVLLVAATTENPS----------FSVVA----------PLLSR-SLVLQLRSLTEEDVE 182

Query: 190 TIVQRGA----KLTG-LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            +++R       L G ++++DEAA  +   + G  R   R L  +   A+   A  +  E
Sbjct: 183 AVLRRAVIDPRGLNGAVSLSDEAARHLVAVAGGDAR---RALTALEASADATEAGGVI-E 238

Query: 245 IAD--AALLRLAI--DKMGFDQLDL 265
           +AD  AA+ R A+  D+ G    D+
Sbjct: 239 VADVEAAIDRAAVRYDRDGDQHYDV 263


>gi|269119747|ref|YP_003307924.1| ATPase AAA [Sebaldella termitidis ATCC 33386]
 gi|268613625|gb|ACZ07993.1| AAA ATPase central domain protein [Sebaldella termitidis ATCC
           33386]
          Length = 408

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 81/165 (49%), Gaps = 14/165 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEA-AKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           RP+TLEEF GQ     +  V  +   K+R     + +F GP G GKTTLA++VA +L   
Sbjct: 19  RPKTLEEFAGQKNIVGDKGVLKKILIKSR---FMNSIFWGPSGTGKTTLAEIVAEQLNYY 75

Query: 82  F---RSTSGPV--IAKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           +    +T   V  I +  + A    ++E +  +LF DEIHR + + ++ L   + D ++ 
Sbjct: 76  YEYLNATKASVNDIKEIAEKAKKRFSIEGKQTILFFDEIHRFNKLQQDSL---LHDIEIG 132

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            ++  G +  +   NL+   L++            +D FGI  R+
Sbjct: 133 NIILIGATTENPYFNLNN-ALLSRCLMFEFKKLDKEDIFGILKRI 176


>gi|148826111|ref|YP_001290864.1| recombination factor protein RarA [Haemophilus influenzae PittEE]
 gi|148716271|gb|ABQ98481.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Haemophilus
           influenzae PittEE]
          Length = 453

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 59/115 (51%), Gaps = 7/115 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  LE++ GQ       K   +A +A    +  ++  GPPG GKTTLA+++A+ +   
Sbjct: 20  MRPTNLEQYFGQSHLIGEGKPLRKAIQAGH--IHSMILWGPPGTGKTTLAEIIAQRINAE 77

Query: 82  FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
                  TSG   I +A D A      + + +LF+DE+HR +   ++   P +ED
Sbjct: 78  VERISAVTSGIKEIREAIDRAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIED 132


>gi|56421102|ref|YP_148420.1| recombination factor protein RarA [Geobacillus kaustophilus HTA426]
 gi|56380944|dbj|BAD76852.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
          Length = 431

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 58/115 (50%), Gaps = 13/115 (11%)

Query: 22  LRPRTLEEFTGQVEACS-NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG- 79
           +RPRT++E  GQ      +  ++    K    +L   L  G PG GKT+LA  +AR  G 
Sbjct: 12  MRPRTIDEIVGQQHIIGPSTPLYKMVKKGHVPSL---LLYGEPGTGKTSLAYAIARTAGR 68

Query: 80  ----VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
               +N  +     I +A + A    N+    VLFIDEIHRL+   +++L P +E
Sbjct: 69  EWVAINATAAGKKEIEEAVEAARWSGNV----VLFIDEIHRLNKAQQDVLLPHLE 119


>gi|13357754|ref|NP_078028.1| recombination factor protein RarA [Ureaplasma parvum serovar 3 str.
           ATCC 700970]
 gi|167972078|ref|ZP_02554355.1| ATPase, AAA family [Ureaplasma parvum serovar 6 str. ATCC 27818]
 gi|168282304|ref|ZP_02689971.1| ATPase, AAA family [Ureaplasma parvum serovar 14 str. ATCC 33697]
 gi|170762441|ref|YP_001752277.1| recombination factor protein RarA [Ureaplasma parvum serovar 3 str.
           ATCC 27815]
 gi|11280340|pir||B82922 conserved hypothetical ATP/GTP-binding protein UU196 [imported] -
           Ureaplasma urealyticum
 gi|6899161|gb|AAF30603.1|AE002119_8 conserved hypothetical ATP/GTP-binding protein [Ureaplasma parvum
           serovar 3 str. ATCC 700970]
 gi|168828018|gb|ACA33280.1| ATPase, AAA family [Ureaplasma parvum serovar 3 str. ATCC 27815]
 gi|182675769|gb|EDT87674.1| ATPase, AAA family [Ureaplasma parvum serovar 14 str. ATCC 33697]
 gi|186700699|gb|EDU18981.1| ATPase, AAA family [Ureaplasma parvum serovar 6 str. ATCC 27818]
          Length = 408

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 53/84 (63%), Gaps = 3/84 (3%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRD--VLFIDE 113
           +++F GPPG+GK++LA+V+A++L V F +   PV+     L  ++    D +  ++ IDE
Sbjct: 42  NLIFYGPPGVGKSSLAKVLAQDLKVPF-AFFNPVVDSKKQLMQIIEQALDLNNFIIIIDE 100

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM 137
           IHRL+   ++IL P +E  ++ L 
Sbjct: 101 IHRLNKDKQDILLPIIEANKIKLF 124


>gi|308276523|gb|ADO26422.1| Replication-associated recombination protein A [Corynebacterium
           pseudotuberculosis I19]
          Length = 456

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 71/143 (49%), Gaps = 17/143 (11%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPR+L++  GQ         L+  IE A    EA   V+  GPPG GKTT+A +++   
Sbjct: 42  MRPRSLDQVVGQQHLLGPGRPLRRLIEGA---GEA--SVILYGPPGTGKTTIASLISTAT 96

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           G +F   S  + +   ++ A++           R VLFIDE+HR S   ++ L  A+E+ 
Sbjct: 97  GHHFVGLSA-LNSGVKEVRAVIDEARRSLIHGKRTVLFIDEVHRFSKTQQDALLAAVENR 155

Query: 133 QLDLMVG--EGPSARSVKINLSR 153
            + L+    E PS   V   LSR
Sbjct: 156 TVLLVAATTENPSFSVVSPLLSR 178


>gi|259502971|ref|ZP_05745873.1| AAA family ATPase [Lactobacillus antri DSM 16041]
 gi|259169096|gb|EEW53591.1| AAA family ATPase [Lactobacillus antri DSM 16041]
          Length = 433

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 63/120 (52%), Gaps = 5/120 (4%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           L+RP +L++  GQ    +  +   +           +L  GPPG GKTTLA V+++ L +
Sbjct: 10  LMRPASLDQMVGQEHLLAPGRPLYQIITEHLAV--SLLLWGPPGSGKTTLAYVMSQTLQL 67

Query: 81  NFRSTSGPVIAKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
            F   +  +  K G L  L+    D   VL +DEIHRL+  +++ L P +E+  + L+VG
Sbjct: 68  PFEKFNASIQNK-GQLQKLVDAHPDESFVLLLDEIHRLTKPLQDYLLPYLENGHI-LLVG 125


>gi|212638579|ref|YP_002315099.1| recombination factor protein RarA [Anoxybacillus flavithermus WK1]
 gi|212560059|gb|ACJ33114.1| ATPase [Anoxybacillus flavithermus WK1]
          Length = 426

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 102/254 (40%), Gaps = 41/254 (16%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRT++E  GQ +   +        K     +  +L  GPPG+GKT+LA  +A  +   
Sbjct: 12  MRPRTIDEVIGQDDVIGSHTALYRMIKN--GYVPSLLLYGPPGVGKTSLAYAIAGTVQRP 69

Query: 82  FRSTSGPVIAKAGDLAALLTN--LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
           F   +     K  ++  ++ +   E   +LFIDEIHR +   ++ L P +E   + L+  
Sbjct: 70  FYMLNATTAGKK-EMEEIVADARFEGNVILFIDEIHRFTKAQQDYLLPHVESGLITLIGA 128

Query: 140 E--------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
                     P+ RS    + +   +     + LL   L DR                  
Sbjct: 129 TTENPFHSINPAVRSRLGQIKQLQPLTKEKTLALLHRALADR------------------ 170

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV------RDFAEVAHAKTITREI 245
            +RG     + ++DEA   IA  + G  R A  +L  V      RD   V   +T+   +
Sbjct: 171 -ERGLGDWHIDISDEALSIIAEGANGDGRAALTILEEVVYATKQRDQYAVVDVQTVLFCV 229

Query: 246 ADAALLRLAIDKMG 259
            + A   L  DK G
Sbjct: 230 ENKA---LTYDKQG 240


>gi|169836411|ref|ZP_02869599.1| Holliday junction DNA helicase B [candidate division TM7
          single-cell isolate TM7a]
          Length = 75

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 1/57 (1%)

Query: 11 NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
          ++ ++  ++SL RP+   E+ GQ     NL++ I+A K R E LDHVL  GPPGLGK
Sbjct: 15 DIDEQRIEVSL-RPQNFSEYIGQDRLKKNLQLAIKATKKRNEPLDHVLLYGPPGLGK 70


>gi|150020062|ref|YP_001305416.1| recombination factor protein RarA [Thermosipho melanesiensis BI429]
 gi|149792583|gb|ABR30031.1| AAA ATPase, central domain protein [Thermosipho melanesiensis
           BI429]
          Length = 410

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 100/240 (41%), Gaps = 36/240 (15%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE--- 77
           +LRP+  EEF GQ E     K  I  A   +  L   +F GPPG GKT+  +++ ++   
Sbjct: 7   ILRPKGFEEFIGQ-EHLFGEKGLIRLA-IESGNLFSAVFYGPPGCGKTSTLEIIRKKTDF 64

Query: 78  --LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME--DFQ 133
                N   TS   + K  D A  +  L+ + ++F+DEIHR +   ++I  P +E  D+ 
Sbjct: 65  EIYHFNAAVTSTIDVKKVLDYAQKVKGLK-KMLIFVDEIHRFNKKQQDIFLPGIERGDYI 123

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
                 E P        LSR  +IA                    +L  +EI   K +++
Sbjct: 124 FIGATTENPFKMINPALLSRIKVIAFK------------------KLKVFEI---KKLLE 162

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R   +  + V +     I   S G  R A  +   + D      AK + +EI D  ++ L
Sbjct: 163 RAISVKNIDVMESVMDFITRISDGDARFAINIYDVLSDM-----AKALGKEIVDDEIVTL 217


>gi|317495439|ref|ZP_07953808.1| ATPase [Gemella moribillum M424]
 gi|316914498|gb|EFV35975.1| ATPase [Gemella moribillum M424]
          Length = 415

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 61/258 (23%), Positives = 110/258 (42%), Gaps = 48/258 (18%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           I+ LRP+ + +  GQ       KV  +  +++ +    +L+ GPPG GKT++A  +A EL
Sbjct: 5   INELRPKKITDIIGQQHLIGKNKVLTKIVESK-KMFSFILY-GPPGTGKTSIANALANEL 62

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
              F+  +    +K  DL  ++   +   + +L +DE HRL+  +++IL P +E      
Sbjct: 63  DYKFKILNAVNCSKK-DLTTVIEESKRFKKVLLLLDEFHRLTKPMQDILLPEIE------ 115

Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLT-NPLQDRFGIPIRLNFYEI-----EDLKT 190
                              +I  TT     T NP      I  RL  +E+     +D+  
Sbjct: 116 --------------YDNIYVIGCTTNNPYHTVNP-----AIRSRLMIFELKQINEDDIYN 156

Query: 191 IVQRGAKLT-----GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
            +++ AK        L++ D+    IA+ S G  R +      +  F  + +       I
Sbjct: 157 YLKKIAKNNDIFSKNLSIDDDVFKAIALNSSGDLRYS------LNTFEILYNLSNKNEHI 210

Query: 246 ADAALLRLAIDKM-GFDQ 262
               LL L+++K   +D+
Sbjct: 211 TKEKLLSLSLEKFKNYDK 228


>gi|217961889|ref|YP_002340459.1| recombination factor protein RarA [Bacillus cereus AH187]
 gi|229141136|ref|ZP_04269678.1| hypothetical protein bcere0013_42300 [Bacillus cereus BDRD-ST26]
 gi|217063641|gb|ACJ77891.1| ATPase, AAA family [Bacillus cereus AH187]
 gi|228642414|gb|EEK98703.1| hypothetical protein bcere0013_42300 [Bacillus cereus BDRD-ST26]
          Length = 428

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 86/330 (26%), Positives = 128/330 (38%), Gaps = 65/330 (19%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  ++E  GQ       K+     +A       ++  GPPG GKT++A  +A   G  
Sbjct: 9   MRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAIAGSTGTP 66

Query: 82  FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
           FR  +  V     D+  ++    +    VL +DE+HRL    ++ L P +E   L     
Sbjct: 67  FRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLL----- 120

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEI----ED-----LK 189
                          TLI ATT     +NP       I  R   +E+    ED     LK
Sbjct: 121 ---------------TLIGATT-----SNPFHAINSAIRSRCQIFELHALTEDDLLIGLK 160

Query: 190 TIVQRGAKLTG---LAVTDEAACEIAMRSRGTPRIAGRLLRR--VRDFAEVAHAKTITRE 244
             ++   K  G   + VT EA    A  S G  R A   L    +  F     A  IT E
Sbjct: 161 RALEDKEKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLE 220

Query: 245 IADAALL--RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           IA+  L   R   DK G    D+  L+   ++  G  V              A+  L   
Sbjct: 221 IAEECLQKKRFVHDKGGDAHYDV--LSAFQKSVRGSDVNA------------ALHYLAR- 265

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
            +I+ G +Q    GR L+ +A++ +G+  P
Sbjct: 266 -LIEAGDLQSI--GRRLLIMAYEDIGLASP 292


>gi|172040631|ref|YP_001800345.1| recombination factor protein RarA [Corynebacterium urealyticum DSM
           7109]
 gi|171851935|emb|CAQ04911.1| conserved hypothetical protein [Corynebacterium urealyticum DSM
           7109]
          Length = 461

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 68/147 (46%), Gaps = 17/147 (11%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR+L E  GQ                R ++   V+  GPPG GKTT+A +++   G +
Sbjct: 36  MRPRSLAEVVGQDHVLGPGTPLQRLIDGRGDS--SVILFGPPGTGKTTIASLISAASGRH 93

Query: 82  FRSTSGPVIAKAGDLAALLTNLED---------RDVLFIDEIHRLSIIVEEILYPAMEDF 132
           F + S    A    +  +   +ED         R VLFIDE+HR S   ++ L  A+E+ 
Sbjct: 94  FVALS----ALNSGVKEVRAVIEDARRRLLHGARTVLFIDEVHRFSKTQQDALLAAVENR 149

Query: 133 QLDLMVG--EGPSARSVKINLSRFTLI 157
            + L+    E PS   V   LSR  L+
Sbjct: 150 TVLLVAATTENPSFSVVSPLLSRSLLV 176


>gi|113866790|ref|YP_725279.1| recombination factor protein RarA [Ralstonia eutropha H16]
 gi|113525566|emb|CAJ91911.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [Ralstonia eutropha H16]
          Length = 455

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 61/118 (51%), Gaps = 15/118 (12%)

Query: 22  LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPRT++E  GQ     A   L+V  E+ +  +     ++  GPPG+GKTTLA+++A   
Sbjct: 21  LRPRTIDEVIGQQHLLGAGKPLRVAFESGEPHS-----MILWGPPGVGKTTLARLMASAF 75

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130
              F + S  V++   D+   +   E       R ++F+DE+HR +   ++   P +E
Sbjct: 76  DAEFIALSA-VLSGVKDIREAVERAEQFRAHGRRTLVFVDEVHRFNKSQQDAFLPHVE 132


>gi|296170787|ref|ZP_06852359.1| AAA family ATPase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295894602|gb|EFG74339.1| AAA family ATPase [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 451

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 75/148 (50%), Gaps = 19/148 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP +L+E  GQ   +   S L+  +E +      +  V+  GPPG GKTTLA ++++  
Sbjct: 35  MRPASLDEVVGQEHLLAPGSPLRRLVEGS-----GMASVILYGPPGSGKTTLAALISQAT 89

Query: 79  GVNFRSTSGPVIAKAGDLAAL-------LTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
              F + S  + A   D+ A+       L N E + VLFIDE+HR S   ++ L  A+E+
Sbjct: 90  ARRFEALSA-LSAGVKDVRAVIDVARRALLNGE-QTVLFIDEVHRFSKTQQDALLSAVEN 147

Query: 132 FQLDLMVG--EGPSARSVKINLSRFTLI 157
             + L+    E PS   V   LSR  ++
Sbjct: 148 RVVLLVAATTENPSFSVVAPLLSRSLIL 175


>gi|213966130|ref|ZP_03394317.1| recombination factor protein RarA [Corynebacterium amycolatum SK46]
 gi|213951228|gb|EEB62623.1| recombination factor protein RarA [Corynebacterium amycolatum SK46]
          Length = 488

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 62/120 (51%), Gaps = 16/120 (13%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPR L+E  GQ   +   + L+  +E     +     V+  GPPG GKTTLA +++   
Sbjct: 68  MRPRNLDEVVGQDHLLAPGAPLRRLVEGGGDTS-----VILFGPPGTGKTTLASLISAAT 122

Query: 79  GVNFRSTSGPVIAKAGDLAAL-------LTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
           G +F + S  + A   ++ A+       L N   + VLFIDE+HR S   ++ L  A+E+
Sbjct: 123 GRHFEALSA-LNAGVKEVRAVIDTARRTLVNQGIQTVLFIDEVHRFSKTQQDALLSAVEN 181


>gi|323495033|ref|ZP_08100122.1| recombination factor protein RarA [Vibrio brasiliensis LMG 20546]
 gi|323310690|gb|EGA63865.1| recombination factor protein RarA [Vibrio brasiliensis LMG 20546]
          Length = 428

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 68/151 (45%), Gaps = 17/151 (11%)

Query: 22  LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP TLE++ GQ     A   L+  +EA       +  ++  GPPG GKTTLA+V A   
Sbjct: 1   MRPETLEQYIGQQHILGAGKPLRRSLEAGH-----IHSMILWGPPGTGKTTLAEVAANYA 55

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDF 132
                  S  V +   ++ A +    +      R +LF+DE+HR +   ++   P +ED 
Sbjct: 56  NAEVERVSA-VTSGVKEIRAAIEKAREYKLAGRRTILFVDEVHRFNKSQQDAFLPHIEDG 114

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATT 161
            +  +    E PS       LSR  +   T+
Sbjct: 115 TVTFIGATTENPSFELNNALLSRARVYKLTS 145


>gi|154248687|ref|YP_001419645.1| recombination factor protein RarA [Xanthobacter autotrophicus Py2]
 gi|154162772|gb|ABS69988.1| AAA ATPase central domain protein [Xanthobacter autotrophicus Py2]
          Length = 436

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 60/130 (46%), Gaps = 11/130 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP  L E  GQ        V     + R+  L  ++  GPPG GKTT+A+++A    ++
Sbjct: 22  LRPAKLSEVVGQDHLVGPDGVLTRMLETRS--LGSLILWGPPGTGKTTVARLLASATDLH 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F   S  + +   DL  +      R       +LF+DEIHR +   ++   P MED  + 
Sbjct: 80  FEQISA-IFSGVADLKKVFEQARARRLVGKATLLFVDEIHRFNRAQQDSFLPVMEDGTVT 138

Query: 136 LM--VGEGPS 143
           L+    E PS
Sbjct: 139 LVGATTENPS 148


>gi|297527205|ref|YP_003669229.1| Replication factor C [Staphylothermus hellenicus DSM 12710]
 gi|297256121|gb|ADI32330.1| Replication factor C [Staphylothermus hellenicus DSM 12710]
          Length = 329

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 41/77 (53%), Gaps = 6/77 (7%)

Query: 9  SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
          SR V  E       RP+TL+E   Q E  S LK F++        + H+LF GPPG GKT
Sbjct: 4  SREVIAELLWAEKYRPKTLDEIVNQEEIVSRLKRFVQERN-----MPHLLFAGPPGTGKT 58

Query: 69 TLAQVVAREL-GVNFRS 84
          T A  +A +L G N+R 
Sbjct: 59 TAAHCLAHDLFGENYRQ 75


>gi|255655288|ref|ZP_05400697.1| recombination factor protein RarA [Clostridium difficile QCD-23m63]
 gi|296451272|ref|ZP_06893012.1| AAA family ATPase [Clostridium difficile NAP08]
 gi|296880376|ref|ZP_06904339.1| AAA family ATPase [Clostridium difficile NAP07]
 gi|296259878|gb|EFH06733.1| AAA family ATPase [Clostridium difficile NAP08]
 gi|296428617|gb|EFH14501.1| AAA family ATPase [Clostridium difficile NAP07]
          Length = 421

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 71/142 (50%), Gaps = 10/142 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+T+ +  GQ     N K+   +   ++  L +++F GPPG+GKTT+A+++A     N
Sbjct: 7   IRPKTMNDVIGQSHIIGNGKIL--SKILQSNFLPNMIFFGPPGVGKTTVAEIIAERSNKN 64

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRD-----VLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           F   +    +   D+  +++ L   +     +L+IDEI   +   ++ +   ME+  + L
Sbjct: 65  FYKINA-TNSSLEDIKNVISELGSINNISGVLLYIDEIQSFNKKQQQSILEFMENGSITL 123

Query: 137 MVG--EGPSARSVKINLSRFTL 156
           +    E P     K  LSR T+
Sbjct: 124 IASTTENPYHYVYKALLSRSTV 145


>gi|237809054|ref|YP_002893494.1| recombination factor protein RarA [Tolumonas auensis DSM 9187]
 gi|237501315|gb|ACQ93908.1| AAA ATPase central domain protein [Tolumonas auensis DSM 9187]
          Length = 448

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 68/138 (49%), Gaps = 16/138 (11%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP  L+++ GQ    +    L+  IEA    +     ++  GPPG GKTTLA+++AR  
Sbjct: 19  MRPERLDQYIGQSHLLAEGKPLRRAIEAGHCHS-----MILWGPPGTGKTTLAELMARYC 73

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDF 132
             +    S  V +   ++ A +   +D      R +LF+DE+HR +   ++   P +ED 
Sbjct: 74  QADVERISA-VTSGVKEIRAAIDRAKDNSYRARRTLLFVDEVHRFNKSQQDAFLPHIEDG 132

Query: 133 QLDLMVGEGPSARSVKIN 150
            + + VG      S ++N
Sbjct: 133 TI-IFVGATTENPSFELN 149


>gi|294659828|ref|XP_462254.2| DEHA2G16302p [Debaryomyces hansenii CBS767]
 gi|199434262|emb|CAG90750.2| DEHA2G16302p [Debaryomyces hansenii]
          Length = 786

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 63/119 (52%), Gaps = 16/119 (13%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP++L+E+ GQ +       LK  I     +++ +   +  G PG+GKT+LA+++++  
Sbjct: 198 LRPKSLDEYYGQEKLVGENGILKNII-----KSDQIPSFILWGVPGVGKTSLARIISQTS 252

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAME 130
              F   SG     A  L  + T  ++       + +LF+DEIHR +  V+++L P +E
Sbjct: 253 NCKFLEVSG-AEGNAKRLREVFTMADNERRLTGRKTILFLDEIHRFNKAVQDLLLPVIE 310


>gi|160914951|ref|ZP_02077165.1| hypothetical protein EUBDOL_00959 [Eubacterium dolichum DSM 3991]
 gi|158433491|gb|EDP11780.1| hypothetical protein EUBDOL_00959 [Eubacterium dolichum DSM 3991]
          Length = 429

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 61/120 (50%), Gaps = 6/120 (5%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  L+E  GQ       KV  +  +     L  ++F GPPG GKTTLA V+A  L   
Sbjct: 12  MRPSVLDEIIGQQHLIGEGKVLRKCVEN--NMLFSMIFYGPPGTGKTTLAMVLANTLNKP 69

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
           +R  +  V     DL  +    +     V+ +DE+HRL+   +++L P +ED  + +M+G
Sbjct: 70  YRLFNA-VSGNKKDLDRIFEEAKYFPGLVVIVDEVHRLNKDKQDLLLPHIEDGSI-IMIG 127


>gi|75764869|ref|ZP_00744233.1| ATPase, AAA family [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|74487644|gb|EAO51496.1| ATPase, AAA family [Bacillus thuringiensis serovar israelensis ATCC
           35646]
          Length = 330

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 129/330 (39%), Gaps = 65/330 (19%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  ++E  GQ       K+     +A       ++  GPPG GKT++A  +A   G  
Sbjct: 9   MRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAIAGSTGTP 66

Query: 82  FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
           FR  +  V     D+  ++    +    VL +DE+HRL    ++ L P +E   L     
Sbjct: 67  FRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLL----- 120

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEI----ED-----LK 189
                          TLI ATT     +NP       I  R   +E+    ED     LK
Sbjct: 121 ---------------TLIGATT-----SNPFHAINSAIRSRCQIFELHALTEDDILIGLK 160

Query: 190 TIVQRGAKLTG---LAVTDEAACEIAMRSRGTPRIAGRLLRR--VRDFAEVAHAKTITRE 244
             ++   K  G   + +TDEA       S G  R A   L    +  F     A  IT E
Sbjct: 161 RALEDKEKGLGEYAVTITDEALHHFTNASGGDMRSAYNALELAVLSSFTTDDQAAEITLE 220

Query: 245 IADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           IA+  L + +   DK G    D+  L+   ++  G  V              A+  L   
Sbjct: 221 IAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDVNA------------ALHYLAR- 265

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
            +I+ G +Q    GR L+ +A++ +G+  P
Sbjct: 266 -LIEAGDLQSI--GRRLLIMAYEDIGLASP 292


>gi|322832175|ref|YP_004212202.1| AAA ATPase [Rahnella sp. Y9602]
 gi|321167376|gb|ADW73075.1| AAA ATPase central domain protein [Rahnella sp. Y9602]
          Length = 447

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 64/130 (49%), Gaps = 11/130 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP TL E+ GQ    +  K    A +A    L  ++  GPPG GKTTLA+++ R    +
Sbjct: 20  MRPVTLAEYIGQQHLLAPGKPLPRAIEA--GQLHSMILWGPPGTGKTTLAELIGRYANAD 77

Query: 82  FRSTSGPVIAKAGDL-AALLTNLEDRD-----VLFIDEIHRLSIIVEEILYPAMEDFQLD 135
               S  V +   D+  A+    ++RD     +LF+DE+HR +   ++   P +ED  + 
Sbjct: 78  VERISA-VTSGVKDIREAIERARQNRDAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTIT 136

Query: 136 LM--VGEGPS 143
            +    E PS
Sbjct: 137 FIGATTENPS 146


>gi|110834153|ref|YP_693012.1| recombination factor protein RarA [Alcanivorax borkumensis SK2]
 gi|110647264|emb|CAL16740.1| ATPase AAA family related to the helicase subunit of the Holliday
           junction resolvase [Alcanivorax borkumensis SK2]
          Length = 443

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 75/163 (46%), Gaps = 14/163 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP  L+++ GQ       K   +A   R + L  ++  GPPG GKTTLA ++A+ +   
Sbjct: 20  LRPTRLDDYVGQQHLVGEGKPLRQALD-RGQ-LHSMILWGPPGTGKTTLALIMAQTVDAA 77

Query: 82  FRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           F + S  +     I  A + A +L     R VLF+DE+HR +   ++   P +E+  +  
Sbjct: 78  FITLSAVLSGVKDIRAAVEQAQILLGQGRRTVLFVDEVHRFNKAQQDAFLPHVEEGTITF 137

Query: 137 M--VGEGPS-----ARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           +    E PS     A   +  + R   +A     GLL   L D
Sbjct: 138 IGATTENPSFELNNALLSRARVYRLRALAPEDLSGLLVRALHD 180


>gi|47220389|emb|CAF98488.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 499

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 61/127 (48%), Gaps = 20/127 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           ADI  LRP TLEE+ GQ +       L+  +E+     E +   +  GPPG GKTTLA +
Sbjct: 162 ADI--LRPDTLEEYFGQNKVIGQQTLLRSLLES-----EEIPSFILWGPPGCGKTTLAHI 214

Query: 74  VA---RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEE 123
           +A   +  G     T     A   D+  ++   ++       + VLFIDEIHR +   ++
Sbjct: 215 IAGKCKRKGTARFVTLSATSASVSDVREVIKQAQNELRLCKRKTVLFIDEIHRFNKSQQD 274

Query: 124 ILYPAME 130
              P +E
Sbjct: 275 TFLPHVE 281


>gi|229086962|ref|ZP_04219119.1| hypothetical protein bcere0022_35350 [Bacillus cereus Rock3-44]
 gi|228696338|gb|EEL49166.1| hypothetical protein bcere0022_35350 [Bacillus cereus Rock3-44]
          Length = 435

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 129/317 (40%), Gaps = 39/317 (12%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  ++E  GQ       K+     +A       ++  GPPG GKT++A  +A   G  
Sbjct: 16  MRPTNIKEIIGQEHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAIAGSTGTP 73

Query: 82  FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
           FR  +  V     D+  ++    +    VL +DE+HRL    ++ L P +E   L L +G
Sbjct: 74  FRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLLTL-IG 131

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199
              S     IN    + I +  ++  L    +DR  I ++    + E       +G    
Sbjct: 132 ATTSNPFHAIN----SAIRSRCQIFELHALTEDRILIGLKRALIDKE-------KGLGEY 180

Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRR--VRDFAEVAHAKTITREIADAALLRLAI-- 255
            + VTDEA    A  S G  R A   L    +  F        IT +IA+  L + +   
Sbjct: 181 NVTVTDEALHHFANASGGDMRSAYNALELAVLSSFTTDDQEVEITLDIAEECLQKKSFVH 240

Query: 256 DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR 315
           DK G    D+  L+   ++  G  V              A+  L    +I+ G +Q    
Sbjct: 241 DKGGDAHYDV--LSAFQKSVRGSDVNA------------ALHYLAR--LIEAGDLQSI-- 282

Query: 316 GRLLMPIAWQHLGIDIP 332
           GR L+ +A++ +G+  P
Sbjct: 283 GRRLLIMAYEDIGLASP 299


>gi|217076507|ref|YP_002334223.1| recombination factor protein RarA [Thermosipho africanus TCF52B]
 gi|217036360|gb|ACJ74882.1| ATPase, AAA family [Thermosipho africanus TCF52B]
          Length = 410

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 98/235 (41%), Gaps = 37/235 (15%)

Query: 21  LLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +LRP+  E+  GQ         LK+ IE      ++L   +F GPPG GKT+  +V+   
Sbjct: 7   ILRPKNFEDVVGQEHILGEKGILKLAIEK-----DSLFSAIFYGPPGCGKTSTLEVIKLN 61

Query: 78  LGV-----NFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
                   N   TS   + K  + AA + +++ + ++FIDE HR +   ++I  P +E F
Sbjct: 62  TSYEVYHFNAAITSTAEVKKILEYAAKVKDVK-KILIFIDEFHRFNKKQQDIFLPGVEAF 120

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGL-LTNP-LQDRFGIPIRLNFYEIEDLKT 190
                                + LI ATT     + NP L  R  + +     + E +  
Sbjct: 121 D--------------------YVLIGATTENPYKMVNPALLSRVRL-VAFKKLQKEHIIK 159

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           ++++   +  + + + A   IA  S G  R A  L   + D A     K I  EI
Sbjct: 160 LLEKAVNVKKVDINENAKDFIARVSNGDGRFAINLYEILSDIAISIDKKIIDEEI 214


>gi|126466118|ref|YP_001041227.1| replication factor C small subunit [Staphylothermus marinus F1]
 gi|158513390|sp|A3DNV9|RFCS_STAMF RecName: Full=Replication factor C small subunit; Short=RFC small
          subunit; AltName: Full=Clamp loader small subunit
 gi|126014941|gb|ABN70319.1| replication factor C small subunit [Staphylothermus marinus F1]
          Length = 329

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 41/77 (53%), Gaps = 6/77 (7%)

Query: 9  SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
          SR V  E       RP+TL+E   Q E  S LK F+     +   + H+LF GPPG GKT
Sbjct: 4  SREVIAELLWAEKYRPKTLDEIVDQEEIVSRLKQFV-----KERNMPHLLFAGPPGTGKT 58

Query: 69 TLAQVVAREL-GVNFRS 84
          T A  +A +L G N+R 
Sbjct: 59 TAAHCLAHDLFGENYRQ 75


>gi|300858568|ref|YP_003783551.1| hypothetical protein cpfrc_01151 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686022|gb|ADK28944.1| hypothetical protein cpfrc_01151 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302206281|gb|ADL10623.1| Replication-associated recombination protein A [Corynebacterium
           pseudotuberculosis C231]
 gi|302330838|gb|ADL21032.1| Uncharacterized AAA domain-containing protein [Corynebacterium
           pseudotuberculosis 1002]
          Length = 445

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 71/143 (49%), Gaps = 17/143 (11%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPR+L++  GQ         L+  IE A    EA   V+  GPPG GKTT+A +++   
Sbjct: 31  MRPRSLDQVVGQQHLLGPGRPLRRLIEGA---GEA--SVILYGPPGTGKTTIASLISTAT 85

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           G +F   S  + +   ++ A++           R VLFIDE+HR S   ++ L  A+E+ 
Sbjct: 86  GHHFVGLSA-LNSGVKEVRAVIDEARRSLIHGKRTVLFIDEVHRFSKTQQDALLAAVENR 144

Query: 133 QLDLMVG--EGPSARSVKINLSR 153
            + L+    E PS   V   LSR
Sbjct: 145 TVLLVAATTENPSFSVVSPLLSR 167


>gi|238855295|ref|ZP_04645614.1| recombination factor protein RarA [Lactobacillus jensenii 269-3]
 gi|260664653|ref|ZP_05865505.1| recombination factor protein RarA [Lactobacillus jensenii SJ-7A-US]
 gi|282932412|ref|ZP_06337837.1| replication-associated recombination protein A [Lactobacillus
           jensenii 208-1]
 gi|313471894|ref|ZP_07812386.1| ATPase, AAA family [Lactobacillus jensenii 1153]
 gi|238832187|gb|EEQ24505.1| recombination factor protein RarA [Lactobacillus jensenii 269-3]
 gi|239529188|gb|EEQ68189.1| ATPase, AAA family [Lactobacillus jensenii 1153]
 gi|260561718|gb|EEX27690.1| recombination factor protein RarA [Lactobacillus jensenii SJ-7A-US]
 gi|281303361|gb|EFA95538.1| replication-associated recombination protein A [Lactobacillus
           jensenii 208-1]
          Length = 433

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 57/118 (48%), Gaps = 5/118 (4%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L E  GQ       K+     +A+   L  ++  GPPG+GKT++A  +A      
Sbjct: 8   MRPKDLSEVVGQQHLVGPGKIIRRMVEAKL--LSSMILYGPPGIGKTSIASAIAGSTKYA 65

Query: 82  FRSTSGPVIAKAGDL--AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           FR  +     K  DL   AL   +    +L +DEIHRL    ++ L P +E  Q+ L+
Sbjct: 66  FRILNAATDTKK-DLQQVALEAKMSGTVILLLDEIHRLDKTKQDFLLPLLESGQIVLI 122


>gi|89070526|ref|ZP_01157815.1| ATPase, AAA family protein [Oceanicola granulosus HTCC2516]
 gi|89043833|gb|EAR50031.1| ATPase, AAA family protein [Oceanicola granulosus HTCC2516]
          Length = 441

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 83/175 (47%), Gaps = 21/175 (12%)

Query: 22  LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+ L +  GQ +     + L   + +      +L  ++F GPPG+GKTT+A+++A E 
Sbjct: 28  LRPQRLADVVGQEQVLGPEAPLTTMLASG-----SLSSLVFWGPPGVGKTTIARLLAAET 82

Query: 79  GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
            ++F   S        + K  + A L        +LF+DEIHR +   ++   P MED  
Sbjct: 83  DLHFVQISAIFTGVQELRKVFEAARLRRQAGQGTLLFVDEIHRFNKAQQDGFLPHMEDGT 142

Query: 134 LDLMVGEGPSARSVKIN---LSRFTLIA----ATTRVGLLTNPLQDRFGIPIRLN 181
           + L+VG      S ++N   LSR  ++        R+ LL    +   G P+ L+
Sbjct: 143 I-LLVGATTENPSFELNAALLSRAQVLVLERLPLARLELLAQRAEAELGRPLPLD 196


>gi|260580369|ref|ZP_05848198.1| replication-associated recombination protein A [Haemophilus
           influenzae RdAW]
 gi|260093046|gb|EEW76980.1| replication-associated recombination protein A [Haemophilus
           influenzae RdAW]
          Length = 446

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 60/115 (52%), Gaps = 7/115 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP +LE++ GQ       K   +A +A    +  ++  GPPG GKTTLA+++A+ +   
Sbjct: 20  MRPTSLEQYFGQSHLIGEGKPLRKAIQA--GHIYSMILWGPPGTGKTTLAEIIAQRINAE 77

Query: 82  FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
                  TSG   I +A D A      + + +LF+DE+HR +   ++   P +ED
Sbjct: 78  VERISAVTSGIKEIREAIDRAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIED 132


>gi|331701253|ref|YP_004398212.1| AAA ATPase central domain-containing protein [Lactobacillus
           buchneri NRRL B-30929]
 gi|329128596|gb|AEB73149.1| AAA ATPase central domain protein [Lactobacillus buchneri NRRL
           B-30929]
          Length = 425

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 59/130 (45%), Gaps = 4/130 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  LEE  GQ +     K+       RA+ L  ++  GPPG GKT++A  +A      
Sbjct: 9   MRPTKLEEIVGQQDLVGPGKIIDRMV--RAKMLSSMILYGPPGTGKTSIASAIAGSTKYA 66

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR  +     K    + A    +    VL +DEIHRL    ++ L P +E   + +++G 
Sbjct: 67  FRVLNAATDTKKDLQVVAEEAKMSGTVVLLLDEIHRLDKTKQDFLLPLLESGSI-ILIGA 125

Query: 141 GPSARSVKIN 150
                 + IN
Sbjct: 126 TTENPYININ 135


>gi|262380591|ref|ZP_06073745.1| recombination factor protein RarA [Acinetobacter radioresistens
           SH164]
 gi|262298037|gb|EEY85952.1| recombination factor protein RarA [Acinetobacter radioresistens
           SH164]
          Length = 423

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 60/195 (30%), Positives = 93/195 (47%), Gaps = 36/195 (18%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPR L E  GQ   +   + L+  I+        L  ++F GPPG+GKTT+A ++A+ +
Sbjct: 12  LRPRDLSEIIGQDHLLGEQAPLRQMIDQGH-----LPSIIFWGPPGVGKTTIALLLAQAV 66

Query: 79  GVNFRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
              F S S           +IA++GD   LLT      V+FIDEIHR +   ++ L  A+
Sbjct: 67  DRPFISLSALNTGVKELREIIAESGD---LLT-----PVVFIDEIHRFNKSQQDALLNAV 118

Query: 130 EDFQLDLM--VGEGPSARSVKINLSR-----FTLIAATTRVGLLTNPLQ-DRFGIPIRLN 181
           E  ++ L+    E PS       LSR       ++ + +   LL   LQ D F   ++  
Sbjct: 119 EKGKITLIGATTENPSFEVNGALLSRCQVYTLNILDSESIQTLLDKALQTDEF---LKER 175

Query: 182 FYEIEDLKTIVQRGA 196
             +IE+   ++Q  A
Sbjct: 176 HIQIEEYDALIQFAA 190


>gi|256850909|ref|ZP_05556298.1| recombination factor protein RarA [Lactobacillus jensenii 27-2-CHN]
 gi|260661123|ref|ZP_05862037.1| recombination factor protein RarA [Lactobacillus jensenii
           115-3-CHN]
 gi|282934179|ref|ZP_06339457.1| replication-associated recombination protein A [Lactobacillus
           jensenii 208-1]
 gi|297205787|ref|ZP_06923182.1| AAA family ATPase [Lactobacillus jensenii JV-V16]
 gi|256615971|gb|EEU21159.1| recombination factor protein RarA [Lactobacillus jensenii 27-2-CHN]
 gi|260548060|gb|EEX24036.1| recombination factor protein RarA [Lactobacillus jensenii
           115-3-CHN]
 gi|281301793|gb|EFA94059.1| replication-associated recombination protein A [Lactobacillus
           jensenii 208-1]
 gi|297148913|gb|EFH29211.1| AAA family ATPase [Lactobacillus jensenii JV-V16]
          Length = 432

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 57/118 (48%), Gaps = 5/118 (4%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L E  GQ       K+     +A+   L  ++  GPPG+GKT++A  +A      
Sbjct: 8   MRPQDLTEVVGQSHLVGPGKIIRRMVEAKL--LSSMILYGPPGIGKTSIASAIAGSTKYA 65

Query: 82  FRSTSGPVIAKAGDL--AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           FR  +     K  DL   AL   +    +L +DEIHRL    ++ L P +E  Q+ L+
Sbjct: 66  FRMLNAATDTKK-DLQQVALEAKMSGTVILLLDEIHRLDKTKQDFLLPLLESGQIVLI 122


>gi|310816981|ref|YP_003964945.1| ATPase, AAA family protein [Ketogulonicigenium vulgare Y25]
 gi|308755716|gb|ADO43645.1| ATPase, AAA family protein [Ketogulonicigenium vulgare Y25]
          Length = 441

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 77/154 (50%), Gaps = 25/154 (16%)

Query: 22  LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPR L +  GQ +   A + L + + +      +L  ++  GPPG+GKTT+A+++A + 
Sbjct: 24  LRPRALGDVIGQEQVLGADAPLGIMLAS-----HSLSSLILWGPPGVGKTTIARLLADQT 78

Query: 79  GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
            + F   S      P + K  + A L        +LF+DEIHR +   ++   P MED  
Sbjct: 79  SLAFVQISAIFTGVPDLKKVFEGARLRRANGQGTLLFVDEIHRFNKAQQDSFLPHMEDGT 138

Query: 134 LDLMVG---EGPS--------ARSVKINLSRFTL 156
           + ++VG   E PS        +R+  + L+R TL
Sbjct: 139 I-VLVGATTENPSFELNAALLSRAQVLVLNRLTL 171


>gi|255318063|ref|ZP_05359308.1| ATPase, AAA family [Acinetobacter radioresistens SK82]
 gi|255304886|gb|EET84058.1| ATPase, AAA family [Acinetobacter radioresistens SK82]
          Length = 423

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 60/195 (30%), Positives = 93/195 (47%), Gaps = 36/195 (18%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPR L E  GQ   +   + L+  I+        L  ++F GPPG+GKTT+A ++A+ +
Sbjct: 12  LRPRDLSEIIGQDHLLGEQAPLRQMIDQGH-----LPSIIFWGPPGVGKTTIALLLAQAV 66

Query: 79  GVNFRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
              F S S           +IA++GD   LLT      V+FIDEIHR +   ++ L  A+
Sbjct: 67  DRPFISLSALNTGVKELREIIAESGD---LLT-----PVVFIDEIHRFNKSQQDALLNAV 118

Query: 130 EDFQLDLM--VGEGPSARSVKINLSR-----FTLIAATTRVGLLTNPLQ-DRFGIPIRLN 181
           E  ++ L+    E PS       LSR       ++ + +   LL   LQ D F   ++  
Sbjct: 119 EKGKITLIGATTENPSFEVNGALLSRCQVYTLNILDSESIQTLLDKALQTDEF---LKER 175

Query: 182 FYEIEDLKTIVQRGA 196
             +IE+   ++Q  A
Sbjct: 176 HIQIEEYDALIQFAA 190


>gi|188534279|ref|YP_001908076.1| recombination factor protein RarA [Erwinia tasmaniensis Et1/99]
 gi|188029321|emb|CAO97198.1| Putative polynucleotide ATPase protein [Erwinia tasmaniensis
           Et1/99]
          Length = 447

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 64/132 (48%), Gaps = 15/132 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL E+ GQ   + A   L   IEA       L  ++  GPPG GKTTLA+++    
Sbjct: 20  MRPRTLAEYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEIIGHYG 74

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             +       TSG   I +A + A    +   R +LF+DE+HR +   ++   P +ED  
Sbjct: 75  QADVERISAVTSGIKDIREAIERARQNRHAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134

Query: 134 LDLM--VGEGPS 143
           +  +    E PS
Sbjct: 135 ITFIGATTENPS 146


>gi|114771241|ref|ZP_01448661.1| ATPase, AAA family protein [alpha proteobacterium HTCC2255]
 gi|114548166|gb|EAU51053.1| ATPase, AAA family protein [alpha proteobacterium HTCC2255]
          Length = 438

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 74/137 (54%), Gaps = 16/137 (11%)

Query: 23  RPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           RP  + +  GQ   + +  +L + +E+       L  ++F GPPG+GKTT+A+++A E+ 
Sbjct: 25  RPTKITDVIGQQKLIGSDGSLTIMLESGN-----LPSIIFWGPPGVGKTTIARLLASEVN 79

Query: 80  VNFRSTSGPVIAKAGDL-----AALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMEDFQ 133
           ++F   S  + +   DL     AA + +L  +  +LF+DEIHR +   ++   P +E+  
Sbjct: 80  MHFVQMSA-IYSGVSDLKKQFEAAKIRHLNGKSTLLFVDEIHRFNKSQQDGFLPFIENGT 138

Query: 134 LDLMVGEGPSARSVKIN 150
           + ++VG      S ++N
Sbjct: 139 I-VLVGATTENPSFELN 154


>gi|304397061|ref|ZP_07378940.1| AAA ATPase central domain protein [Pantoea sp. aB]
 gi|304355210|gb|EFM19578.1| AAA ATPase central domain protein [Pantoea sp. aB]
          Length = 447

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 64/132 (48%), Gaps = 15/132 (11%)

Query: 22  LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP TL+++ GQ     A   L   IEA       L  ++  GPPG GKTTLA+++A   
Sbjct: 20  MRPETLKQYIGQQHLLGAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEIIAHYG 74

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             +       TSG   I +A + A    +   R +LF+DE+HR +   ++   P +ED  
Sbjct: 75  NADVERISAVTSGVKEIREAIERARQNKHAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134

Query: 134 LDLM--VGEGPS 143
           +  +    E PS
Sbjct: 135 ITFIGATTENPS 146


>gi|196012762|ref|XP_002116243.1| hypothetical protein TRIADDRAFT_30677 [Trichoplax adhaerens]
 gi|190581198|gb|EDV21276.1| hypothetical protein TRIADDRAFT_30677 [Trichoplax adhaerens]
          Length = 478

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 75/151 (49%), Gaps = 20/151 (13%)

Query: 22  LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR-- 76
           +RP  L ++ GQ +     ++L+  IE+    +     ++F GPPG GKTTLA ++A+  
Sbjct: 48  IRPNVLTDYIGQDDVLGGKTSLRSLIESGDIHS-----MIFWGPPGCGKTTLANIIAKSG 102

Query: 77  ELGVNFR-------STSGPVIAKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVEEILYPA 128
           +   N R       S+    + +  D+A     + +R  +LF+DEIHR +   +++  P 
Sbjct: 103 KSKANMRFIQLSATSSGTQKVREVIDIAQKDRTMFNRQTILFMDEIHRFNKAQQDVFLPY 162

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLI 157
           +E+  + L+    E PS       LSR  +I
Sbjct: 163 VENGTIVLIGATTENPSFSLNNALLSRCHVI 193


>gi|323144222|ref|ZP_08078854.1| replication-associated recombination protein A [Succinatimonas
           hippei YIT 12066]
 gi|322415997|gb|EFY06699.1| replication-associated recombination protein A [Succinatimonas
           hippei YIT 12066]
          Length = 475

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 63/121 (52%), Gaps = 15/121 (12%)

Query: 20  SLLRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           S +RP +L+++ GQ   +     L++ +E  ++ +     ++F GPPG+GKTTLA ++A+
Sbjct: 35  SRMRPESLDDYIGQSHLIGPGRPLRMALERKQSYS-----MIFWGPPGVGKTTLALIIAK 89

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAME 130
             G      S  V +   D+ A +     R       VLF+DE+HR +   ++   P +E
Sbjct: 90  SSGAVLEQISA-VTSGVKDIRAAIDRAMSRKRQGVRTVLFVDEVHRFNKSQQDAFLPYIE 148

Query: 131 D 131
           +
Sbjct: 149 N 149


>gi|170691962|ref|ZP_02883126.1| AAA ATPase central domain protein [Burkholderia graminis C4D1M]
 gi|170143246|gb|EDT11410.1| AAA ATPase central domain protein [Burkholderia graminis C4D1M]
          Length = 480

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 117/261 (44%), Gaps = 48/261 (18%)

Query: 22  LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPR ++E  GQ         L+V  E+ +A +     ++  GPPG+GKTTLA+++A   
Sbjct: 58  LRPRNIDEVIGQKHLLGPNKPLRVAFESGEAHS-----MILWGPPGVGKTTLARLMADAF 112

Query: 79  GVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
              F + S  +     I +A + A +      + ++F+DE+HR +   ++   P +E   
Sbjct: 113 HAQFIALSAVLSGVKDIREAVETAQIHRANGHQTLVFVDEVHRFNKSQQDAFLPHVES-G 171

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           L + VG      S ++N +  +  A                     L   + ++L+ +++
Sbjct: 172 LFVFVGATTENPSFEVNSALLSRAAVYV------------------LKSLDEDELRELLE 213

Query: 194 RGAK-LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           R  + L GL  TDEA   +   + G  R   +LL  +   A  A A+  T EI D ALL 
Sbjct: 214 RAQRELGGLTFTDEARDALIGSADGDGR---KLLNNLEIVARAA-AQQKTTEI-DGALLG 268

Query: 253 LAI-------DKMG---FDQL 263
            A+       DK G   +DQ+
Sbjct: 269 SALAENLRRFDKGGDAFYDQI 289


>gi|304387476|ref|ZP_07369667.1| replication-associated recombination protein A [Neisseria
           meningitidis ATCC 13091]
 gi|304338569|gb|EFM04688.1| replication-associated recombination protein A [Neisseria
           meningitidis ATCC 13091]
          Length = 436

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 66/142 (46%), Gaps = 15/142 (10%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP TL++  GQ   +     L+V +E  K  +     +L  G PG+GKTTLA+++A+  
Sbjct: 17  LRPHTLDDVVGQEHLIGEGKPLRVAVEGGKPHS-----MLLWGSPGVGKTTLARILAQSF 71

Query: 79  GVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
              F   S        I +A D A +        +LF+DE+HR +   ++   P +E+  
Sbjct: 72  NAQFLPVSAVFSGVKDIREAIDKAEIALQQGRATILFVDEVHRFNKAQQDAFLPYVENGL 131

Query: 134 LDLM--VGEGPSARSVKINLSR 153
           L  +    E PS       LSR
Sbjct: 132 LTFIGATTENPSFEVNPALLSR 153


>gi|296333157|ref|ZP_06875610.1| recombination factor protein RarA [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305675337|ref|YP_003867009.1| putative helicase associated protein (ATPase, AAA family) [Bacillus
           subtilis subsp. spizizenii str. W23]
 gi|296149355|gb|EFG90251.1| recombination factor protein RarA [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305413581|gb|ADM38700.1| putative helicase associated protein (ATPase, AAA family) [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 421

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 57/111 (51%), Gaps = 3/111 (2%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  +E+  GQ    +  K+       +A+ L  ++  GPPG+GKT++A  +A    + 
Sbjct: 8   MRPTKIEDIIGQQHLVAEDKII--GRMVQAKHLSSMILYGPPGIGKTSIATAIAGSTSIA 65

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
           FR  +  +  K   ++ A    +  + +L +DE+HRL    ++ L P +E+
Sbjct: 66  FRKLNAVINNKKDMEIVAQEAKMSGQVILILDEVHRLDKGKQDFLLPYLEN 116


>gi|23099472|ref|NP_692938.1| recombination factor protein RarA [Oceanobacillus iheyensis HTE831]
 gi|22777701|dbj|BAC13973.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 425

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 59/118 (50%), Gaps = 5/118 (4%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ ++E  GQ       K+     KA    L  ++  GPPG GKT++A  +A  +G+ 
Sbjct: 11  MRPKNIDEIIGQEHLVGQGKIIDRMVKANM--LSSMILFGPPGTGKTSMAYALANSVGLP 68

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
            +  +  V  K  D+  ++   + R   VL +DE+HRL    ++ L P +E   L L+
Sbjct: 69  LKILNA-VTDKKKDMEIVVEEAKMRGQMVLILDEVHRLDKAKQDFLLPHLESNLLTLI 125


>gi|332158284|ref|YP_004423563.1| putative protein replication factor C small subunit [Pyrococcus sp.
           NA2]
 gi|331033747|gb|AEC51559.1| putative protein replication factor C small subunit [Pyrococcus sp.
           NA2]
          Length = 1267

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 53/102 (51%), Gaps = 17/102 (16%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81
           RP+ L+E  GQ      LK +++       ++ H+LF GPPG+GKTT A  +AREL G N
Sbjct: 19  RPQRLDEIVGQEHIVKRLKHYVKTG-----SMPHLLFAGPPGVGKTTAALALARELFGEN 73

Query: 82  FR----------STSGPVIAKAGDLAALLTNLEDRDVLFIDE 113
           +R          S + P++ +  +   + T   + D L+ DE
Sbjct: 74  WRHNFLELNASVSKNTPILVRINE-RIVRTTFAELDRLYFDE 114


>gi|228948113|ref|ZP_04110397.1| hypothetical protein bthur0007_42390 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228811471|gb|EEM57808.1| hypothetical protein bthur0007_42390 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 476

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 88/350 (25%), Positives = 136/350 (38%), Gaps = 65/350 (18%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           ++R+  L   V  +      +RP  ++E  GQ       K+     +A       ++  G
Sbjct: 37  IERDYTLRETVKMKQPLAHRMRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYG 94

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSI 119
           PPG GKT++A  +A   G  FR  +  V     D+  ++    +    VL +DE+HRL  
Sbjct: 95  PPGTGKTSIASAIAGSTGTPFRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDK 153

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPI 178
             ++ L P +E   L                    TLI ATT     +NP       I  
Sbjct: 154 AKQDFLLPHLESGLL--------------------TLIGATT-----SNPFHAINSAIRS 188

Query: 179 RLNFYEI----ED-----LKTIVQRGAKLTG---LAVTDEAACEIAMRSRGTPRIAGRLL 226
           R   +E+    ED     LK  ++   K  G   + VT EA    A  S G  R A   L
Sbjct: 189 RCQIFELHALTEDDLLIGLKRALEDKEKGLGEYDVTVTPEALHHFANASGGDMRSAYNAL 248

Query: 227 RR--VRDFAEVAHAKTITREIADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGI 282
               +  F     A  IT EIA+  L + +   DK G    D+  L+   ++  G  V  
Sbjct: 249 ELAVLSSFTTDDKAAEITLEIAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDVNA 306

Query: 283 ETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
                       A+  L    +I+ G +Q    GR L+ +A++ +G+  P
Sbjct: 307 ------------ALHYLAR--LIEAGDLQSI--GRRLLIMAYEDIGLASP 340


>gi|321312280|ref|YP_004204567.1| recombination factor protein RarA [Bacillus subtilis BSn5]
 gi|320018554|gb|ADV93540.1| recombination factor protein RarA [Bacillus subtilis BSn5]
          Length = 421

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 57/111 (51%), Gaps = 3/111 (2%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  +E+  GQ    +  K+       +A+ L  ++  GPPG+GKT++A  +A    + 
Sbjct: 8   MRPTKIEDIIGQQHLVAEDKII--GRMVQAKHLSSMILYGPPGIGKTSIATAIAGSTSIA 65

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
           FR  +  +  K   ++ A    +  + +L +DE+HRL    ++ L P +E+
Sbjct: 66  FRKLNAVINNKKDMEIVAQEAKMSGQVILILDEVHRLDKGKQDFLLPYLEN 116


>gi|239616608|ref|YP_002939930.1| AAA ATPase central domain protein [Kosmotoga olearia TBF 19.5.1]
 gi|239505439|gb|ACR78926.1| AAA ATPase central domain protein [Kosmotoga olearia TBF 19.5.1]
          Length = 427

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 67/146 (45%), Gaps = 12/146 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG-- 79
           LRPR  ++  GQ E  +     I  A         +LF GPPG GKTT+A+++   L   
Sbjct: 7   LRPRNFDDLVGQ-EHLTGKNGIIRRAVESGYVFSMILF-GPPGSGKTTIARLIKESLADD 64

Query: 80  -VNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
              F + S  +     + K  + A  L       VLF+DEIHRL+   +++  P +ED  
Sbjct: 65  KYEFVAFSASLQGTADLKKIFERARQLRKYGKHLVLFVDEIHRLNKTQQDVFLPVVEDGT 124

Query: 134 LDLM--VGEGPSARSVKINLSRFTLI 157
           + L+    E PS       LSR  L+
Sbjct: 125 VTLIGATTENPSFEVNPALLSRCRLL 150


>gi|254246062|ref|ZP_04939383.1| ATPase [Burkholderia cenocepacia PC184]
 gi|124870838|gb|EAY62554.1| ATPase [Burkholderia cenocepacia PC184]
          Length = 441

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 110/257 (42%), Gaps = 38/257 (14%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL E  GQ         L++  E+ K  +     ++  GPPG+GKTTLA++ A   
Sbjct: 22  LRPKTLAEVIGQTHLLGEGKPLRLAFESGKPHS-----MILWGPPGVGKTTLARLTALAF 76

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V+    D+   +   +D         +LF+DEIHR +   ++ L P +E 
Sbjct: 77  DCEFIALSA-VLGGVKDIRESMEQAKDTLNRTGRHTILFVDEIHRFNKGQQDALLPFVES 135

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
             L   +G      S ++N    + + +  +V +L +           LN  E+  L   
Sbjct: 136 -GLVTFIGATTENPSFEVN----SALLSRAQVYVLKS-----------LNDDEMRQLLKR 179

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
            Q  A L GLA  D+A   +   + G  R    LL + +  A  A   TI  +    A+ 
Sbjct: 180 AQEIA-LDGLAFDDKAIDTLVGYADGDARRFLNLLEQAQTAATSAGVATIDADFVSNAMT 238

Query: 252 RLA--IDKMG---FDQL 263
             A   DK G   +DQ+
Sbjct: 239 LNARRFDKGGDNFYDQI 255


>gi|218884000|ref|YP_002428382.1| replication factor C small subunit [Desulfurococcus kamchatkensis
          1221n]
 gi|218765616|gb|ACL11015.1| replication factor C small subunit [Desulfurococcus kamchatkensis
          1221n]
          Length = 326

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 37/63 (58%), Gaps = 6/63 (9%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81
          RPRTL+E   Q E    LK F+E        + H+LF GPPG GKTT+A  +A +L G +
Sbjct: 14 RPRTLDEVVNQKEVVVRLKKFVEEKN-----IPHMLFAGPPGTGKTTIAHCLAHDLYGDD 68

Query: 82 FRS 84
          +R 
Sbjct: 69 YRK 71


>gi|160945075|ref|ZP_02092301.1| hypothetical protein FAEPRAM212_02594 [Faecalibacterium prausnitzii
           M21/2]
 gi|158442806|gb|EDP19811.1| hypothetical protein FAEPRAM212_02594 [Faecalibacterium prausnitzii
           M21/2]
          Length = 424

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 72/146 (49%), Gaps = 16/146 (10%)

Query: 22  LRPRTLEEFTGQVEACSNLKVF---IEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL +  GQ    +  +VF   IE+ +     + +++F GP G GKTT+A+++A   
Sbjct: 9   LRPKTLADVCGQQHLLAPGRVFRRTIESGR-----IPNMIFYGPSGTGKTTVARIIAENS 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRD-----VLFIDEIHRLSIIVEEILYPAMEDFQ 133
           G+     +G      GD+ A+L ++         +L++DEI  L+   ++ L   +ED  
Sbjct: 64  GMTLHKLNGTSCG-TGDIKAVLKDIGTLAAAGGILLYLDEIQYLNKKQQQSLLECIEDGS 122

Query: 134 LDLMVG--EGPSARSVKINLSRFTLI 157
           + L+    E P        LSR T+ 
Sbjct: 123 VTLIASTTENPYFYIYNALLSRCTVF 148


>gi|16079807|ref|NP_390631.1| recombination factor protein RarA [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221310690|ref|ZP_03592537.1| recombination factor protein RarA [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221315014|ref|ZP_03596819.1| recombination factor protein RarA [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221319935|ref|ZP_03601229.1| recombination factor protein RarA [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221324216|ref|ZP_03605510.1| recombination factor protein RarA [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|81555984|sp|O34528|YRVN_BACSU RecName: Full=Uncharacterized AAA domain-containing protein YrvN
 gi|2635199|emb|CAB14695.1| putative helicase associated protein (ATPase, AAA family) [Bacillus
           subtilis subsp. subtilis str. 168]
          Length = 421

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 57/111 (51%), Gaps = 3/111 (2%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  +E+  GQ    +  K+       +A+ L  ++  GPPG+GKT++A  +A    + 
Sbjct: 8   MRPTKIEDIIGQQHLVAEDKII--GRMVQAKHLSSMILYGPPGIGKTSIATAIAGSTSIA 65

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
           FR  +  +  K   ++ A    +  + +L +DE+HRL    ++ L P +E+
Sbjct: 66  FRKLNAVINNKKDMEIVAQEAKMSGQVILILDEVHRLDKGKQDFLLPYLEN 116


>gi|330860580|emb|CBX70879.1| hypothetical protein YEW_DI14130 [Yersinia enterocolitica W22703]
          Length = 208

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 72/149 (48%), Gaps = 11/149 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP TLE++ GQ    +  K    A  A    L  ++  GPPG GKTTLA+++ R    +
Sbjct: 17  MRPLTLEQYIGQQHLLAPGKPLPRAIVA--GQLHSMILWGPPGTGKTTLAEIIGRYGQAD 74

Query: 82  FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
                  TSG   I +A + A    +   R +LF+DE+HR +   ++   P +ED  +  
Sbjct: 75  VERISAVTSGIKEIREAIERARQNRDAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 134

Query: 137 M--VGEGPS--ARSVKINLSRFTLIAATT 161
           +    E PS    S  ++ +R  L+ A T
Sbjct: 135 IGATTENPSFELNSALLSRARVYLLKALT 163


>gi|291485161|dbj|BAI86236.1| recombination factor protein RarA [Bacillus subtilis subsp. natto
           BEST195]
          Length = 421

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 57/111 (51%), Gaps = 3/111 (2%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  +E+  GQ    +  K+       +A+ L  ++  GPPG+GKT++A  +A    + 
Sbjct: 8   MRPTKIEDIIGQQHLVAEDKII--GRMVQAKHLSSMILYGPPGIGKTSIATAIAGSTSIA 65

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
           FR  +  +  K   ++ A    +  + +L +DE+HRL    ++ L P +E+
Sbjct: 66  FRKLNAVINNKKDMEIVAQEAKMSGQVILILDEVHRLDKGKQDFLLPYLEN 116


>gi|323701391|ref|ZP_08113065.1| AAA ATPase central domain protein [Desulfotomaculum nigrificans DSM
           574]
 gi|323533650|gb|EGB23515.1| AAA ATPase central domain protein [Desulfotomaculum nigrificans DSM
           574]
          Length = 434

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 56/116 (48%), Gaps = 8/116 (6%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           LS+N  Q       +RPR L+E+ GQ       K+   A +A  + L  ++  GPPG GK
Sbjct: 6   LSQNSLQAAPLAERMRPRNLDEYIGQQHIVGPGKLLRRAIEA--DKLGSIILYGPPGTGK 63

Query: 68  TTLAQVVARELGVNF---RSTSGPVIAKAGDLAALLTNLE---DRDVLFIDEIHRL 117
           TTLA ++++    +F    + S  V     ++     NL     + + FIDEIH L
Sbjct: 64  TTLATIISQMTSADFVKINAVSSGVAEIRAEIKKARDNLNYYGKKTIFFIDEIHSL 119


>gi|295105669|emb|CBL03213.1| Recombination protein MgsA [Faecalibacterium prausnitzii SL3/3]
          Length = 424

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 72/146 (49%), Gaps = 16/146 (10%)

Query: 22  LRPRTLEEFTGQVEACSNLKVF---IEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL +  GQ    +  +VF   IE+ +     + +++F GP G GKTT+A+++A   
Sbjct: 9   LRPKTLADVCGQQHLLAPGRVFRRTIESGR-----IPNMIFYGPSGTGKTTVARIIAENS 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRD-----VLFIDEIHRLSIIVEEILYPAMEDFQ 133
           G+     +G      GD+ A+L ++         +L++DEI  L+   ++ L   +ED  
Sbjct: 64  GMTLHKLNGTSCG-TGDIKAVLKDIGTLAAAGGILLYLDEIQYLNKKQQQSLLECIEDGS 122

Query: 134 LDLMVG--EGPSARSVKINLSRFTLI 157
           + L+    E P        LSR T+ 
Sbjct: 123 VTLIASTTENPYFYIYNALLSRCTVF 148


>gi|238063892|ref|ZP_04608601.1| recombination factor protein rarA [Micromonospora sp. ATCC 39149]
 gi|237885703|gb|EEP74531.1| recombination factor protein rarA [Micromonospora sp. ATCC 39149]
          Length = 498

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 70/148 (47%), Gaps = 18/148 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP +L+E  GQ   +   + L+  +  A   +     V+  GPPG GKTT+A +VA   
Sbjct: 41  MRPASLDELVGQGHLLAPGAPLRQLVVGATPMS-----VILWGPPGCGKTTIAHLVAHAT 95

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAMED 131
              F + S  + A   D+ A++            + VLFIDE+HR S   ++ L  A+ED
Sbjct: 96  DRRFVAMSA-LTAGVKDVRAVIDTARRQRRSGGPQTVLFIDEVHRFSKTQQDSLLAAVED 154

Query: 132 FQLDLMVG--EGPSARSVKINLSRFTLI 157
             + L+    E P    +   LSR  L+
Sbjct: 155 RTVTLLAATTENPYFSVISPLLSRCVLL 182


>gi|107022056|ref|YP_620383.1| recombination factor protein RarA [Burkholderia cenocepacia AU
           1054]
 gi|116689000|ref|YP_834623.1| recombination factor protein RarA [Burkholderia cenocepacia HI2424]
 gi|105892245|gb|ABF75410.1| Recombination protein MgsA [Burkholderia cenocepacia AU 1054]
 gi|116647089|gb|ABK07730.1| Recombination protein MgsA [Burkholderia cenocepacia HI2424]
          Length = 436

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 110/257 (42%), Gaps = 38/257 (14%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL E  GQ         L++  E+ K  +     ++  GPPG+GKTTLA++ A   
Sbjct: 17  LRPKTLAEVIGQTHLLGEGKPLRLAFESGKPHS-----MILWGPPGVGKTTLARLTALAF 71

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V+    D+   +   +D         +LF+DEIHR +   ++ L P +E 
Sbjct: 72  DCEFIALSA-VLGGVKDIRESMEQAKDTLNRTGRHTILFVDEIHRFNKGQQDALLPFVES 130

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
             L   +G      S ++N    + + +  +V +L +           LN  E+  L   
Sbjct: 131 -GLVTFIGATTENPSFEVN----SALLSRAQVYVLKS-----------LNDDEMRQLLKR 174

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
            Q  A L GLA  D+A   +   + G  R    LL + +  A  A   TI  +    A+ 
Sbjct: 175 AQEIA-LDGLAFDDKAIDTLVGYADGDARRFLNLLEQAQTAATSAGVATIDADFVSNAMT 233

Query: 252 RLA--IDKMG---FDQL 263
             A   DK G   +DQ+
Sbjct: 234 LNARRFDKGGDNFYDQI 250


>gi|330815819|ref|YP_004359524.1| AAA ATPase, central region [Burkholderia gladioli BSR3]
 gi|327368212|gb|AEA59568.1| AAA ATPase, central region [Burkholderia gladioli BSR3]
          Length = 436

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 59/119 (49%), Gaps = 16/119 (13%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL+E  GQ         L++  E+ +  +     ++  GPPG+GKTTLA++ A   
Sbjct: 17  LRPKTLDEVIGQTHLLGEGKPLRLAFESGRPHS-----MILWGPPGVGKTTLARLTANAF 71

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAME 130
              F + S  V+    D+   +   +D         +LF+DEIHR +   ++ L P +E
Sbjct: 72  DCEFIALSA-VLGGVKDIREAMEQAKDTLHRNGRHTILFVDEIHRFNKGQQDALLPFVE 129


>gi|308186247|ref|YP_003930378.1| hypothetical protein Pvag_0727 [Pantoea vagans C9-1]
 gi|308056757|gb|ADO08929.1| Uncharacterized protein [Pantoea vagans C9-1]
          Length = 447

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 64/132 (48%), Gaps = 15/132 (11%)

Query: 22  LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP TL+++ GQ     A   L   IEA       L  ++  GPPG GKTTLA+++A   
Sbjct: 20  MRPETLKQYIGQQHLLGAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEIIAHYG 74

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             +       TSG   I +A + A    +   R +LF+DE+HR +   ++   P +ED  
Sbjct: 75  NADVERISAVTSGVKEIREAIERARQNKHAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134

Query: 134 LDLM--VGEGPS 143
           +  +    E PS
Sbjct: 135 ITFIGATTENPS 146


>gi|164662339|ref|XP_001732291.1| hypothetical protein MGL_0066 [Malassezia globosa CBS 7966]
 gi|159106194|gb|EDP45077.1| hypothetical protein MGL_0066 [Malassezia globosa CBS 7966]
          Length = 446

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 72/155 (46%), Gaps = 21/155 (13%)

Query: 22  LRPRTLEEFTGQVEACS-NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           +RP+TL+E+ GQ +  + +L+  +         +  ++  GPPG GKTTLA+++ RE   
Sbjct: 62  MRPQTLDEYVGQDDVVNGSLRALLHKGH-----IPSMVLWGPPGSGKTTLARLLTREAIT 116

Query: 81  NFRSTS------GPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLSIIVEEILYP 127
               T           A A D+  ++    +R        VLFIDEI R +   +++  P
Sbjct: 117 TTNHTPFRFVELSATTATANDVKRIVEEAVNRQMLTTQRTVLFIDEIQRFNRAQQDLFLP 176

Query: 128 AMEDFQLDLMVG--EGPSARSVKINLSRFTLIAAT 160
            +E   + L+    E PS R     LSR  ++  T
Sbjct: 177 MLERGLITLLAATTENPSFRLQGALLSRLRVVVLT 211


>gi|261380370|ref|ZP_05984943.1| replication-associated recombination protein A [Neisseria subflava
           NJ9703]
 gi|284796894|gb|EFC52241.1| replication-associated recombination protein A [Neisseria subflava
           NJ9703]
          Length = 435

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 66/143 (46%), Gaps = 17/143 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP +L++  GQ   +     L+V +E  K  +     +L  GPPG+GKTTLA+++A+  
Sbjct: 17  LRPHSLDDVIGQQHLIGEGKPLRVAVEGGKPHS-----MLLWGPPGVGKTTLARILAQSF 71

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
              F   S  V +   D+   +   E         +LF+DE+HR +   ++   P +E  
Sbjct: 72  NAQFLPVSA-VFSGVKDIREAIEKAEIALQQGRATILFVDEVHRFNKAQQDAFLPYVESG 130

Query: 133 QLDLM--VGEGPSARSVKINLSR 153
            L  +    E PS       LSR
Sbjct: 131 LLTFIGATTENPSFEVNPALLSR 153


>gi|320100775|ref|YP_004176367.1| replication factor C small subunit [Desulfurococcus mucosus DSM
          2162]
 gi|319753127|gb|ADV64885.1| replication factor C small subunit [Desulfurococcus mucosus DSM
          2162]
          Length = 347

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 35/56 (62%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RPRTL+E   Q E    LK F+E      +++ H+LF GPPG GKTT+A  +A +L
Sbjct: 35 RPRTLDEVVNQKEIVVRLKKFVEE-----KSIPHMLFAGPPGTGKTTMAHCLAHDL 85


>gi|170732290|ref|YP_001764237.1| recombination factor protein RarA [Burkholderia cenocepacia MC0-3]
 gi|169815532|gb|ACA90115.1| AAA ATPase central domain protein [Burkholderia cenocepacia MC0-3]
          Length = 436

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 110/257 (42%), Gaps = 38/257 (14%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL E  GQ         L++  E+ K  +     ++  GPPG+GKTTLA++ A   
Sbjct: 17  LRPKTLAEVIGQTHLLGEGKPLRLAFESGKPHS-----MILWGPPGVGKTTLARLTALAF 71

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V+    D+   +   +D         +LF+DEIHR +   ++ L P +E 
Sbjct: 72  DCEFIALSA-VLGGVKDIRESMEQAKDTLNRTGRHTILFVDEIHRFNKGQQDALLPFVES 130

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
             L   +G      S ++N    + + +  +V +L +           LN  E+  L   
Sbjct: 131 -GLVTFIGATTENPSFEVN----SALLSRAQVYVLKS-----------LNDDEMRQLLKR 174

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
            Q  A L GLA  D+A   +   + G  R    LL + +  A  A   TI  +    A+ 
Sbjct: 175 AQEIA-LDGLAFDDKAIDTLVGYADGDARRFLNLLEQAQTAATSAGVATIDADFVSNAMT 233

Query: 252 RLA--IDKMG---FDQL 263
             A   DK G   +DQ+
Sbjct: 234 LNARRFDKGGDNFYDQI 250


>gi|289670475|ref|ZP_06491550.1| recombination factor protein RarA [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 457

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 66/137 (48%), Gaps = 14/137 (10%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL+E  GQ   +   S L+  +E+ +  +     ++  GPPG GKTTLA ++A   
Sbjct: 29  MRPRTLDEMVGQKRLLAPDSALRRAVESGRVHS-----MILWGPPGCGKTTLALLLAHYA 83

Query: 79  GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
              F++ S      P + +    AA       R VLF+DE+HR +   +    P +E   
Sbjct: 84  DAEFKAISAVLSGLPEVRQVLAEAAQRFAGGRRTVLFVDEVHRFNKAQQYAFLPHIERGT 143

Query: 134 LDLMVGEGPSARSVKIN 150
           + L VG      S ++N
Sbjct: 144 I-LFVGATTENPSFELN 159


>gi|206976016|ref|ZP_03236926.1| ATPase, AAA family [Bacillus cereus H3081.97]
 gi|206745768|gb|EDZ57165.1| ATPase, AAA family [Bacillus cereus H3081.97]
          Length = 428

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 85/330 (25%), Positives = 129/330 (39%), Gaps = 65/330 (19%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  ++E  GQ       K+     +A       ++  GPPG GKT++A  +A   G  
Sbjct: 9   MRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAIAGSTGTP 66

Query: 82  FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
           FR  +  V     D+  ++    +    VL +DE+HRL    ++ L P +E   L     
Sbjct: 67  FRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLL----- 120

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEI----ED-----LK 189
                          TLI ATT     +NP       I  R   +E+    ED     LK
Sbjct: 121 ---------------TLIGATT-----SNPFHAINSAIRSRCQIFELHALTEDDLLIGLK 160

Query: 190 TIVQRGAKLTG---LAVTDEAACEIAMRSRGTPRIAGRLLRR--VRDFAEVAHAKTITRE 244
             ++   K  G   + VT EA    A  S G  R A   L    +  F     A  IT E
Sbjct: 161 RALEDKEKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLE 220

Query: 245 IADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           IA+  L + +   DK G    D+  L+   ++  G  V              A+  L   
Sbjct: 221 IAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDVNA------------ALHYLAR- 265

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
            +I+ G +Q    GR L+ +A++ +G+  P
Sbjct: 266 -LIEAGDLQSI--GRRLLIMAYEDIGLASP 292


>gi|229098871|ref|ZP_04229807.1| hypothetical protein bcere0020_40950 [Bacillus cereus Rock3-29]
 gi|229117896|ref|ZP_04247258.1| hypothetical protein bcere0017_41660 [Bacillus cereus Rock1-3]
 gi|228665553|gb|EEL21033.1| hypothetical protein bcere0017_41660 [Bacillus cereus Rock1-3]
 gi|228684544|gb|EEL38486.1| hypothetical protein bcere0020_40950 [Bacillus cereus Rock3-29]
          Length = 428

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 85/330 (25%), Positives = 129/330 (39%), Gaps = 65/330 (19%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  ++E  GQ       K+     +A       ++  GPPG GKT++A  +A   G  
Sbjct: 9   MRPTNIQEIIGQQHLVGEGKILRRMVQANH--FQSMILYGPPGTGKTSIASAIAGSTGTP 66

Query: 82  FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
           FR  +  V     D+  ++    +    VL +DE+HRL    ++ L P +E   L     
Sbjct: 67  FRLLNA-VTHNKKDMEVVVQEAKMHQHLVLILDEVHRLDKAKQDFLLPHLESGLL----- 120

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEI----ED-----LK 189
                          TLI ATT     +NP       I  R   +E+    ED     LK
Sbjct: 121 ---------------TLIGATT-----SNPFHAINSAIRSRCQIFELHALTEDDILIGLK 160

Query: 190 TIVQRGAKLTG---LAVTDEAACEIAMRSRGTPRIAGRLLRR--VRDFAEVAHAKTITRE 244
             ++   K  G   + VTD A    A  S G  R A   L    +  F     A  IT E
Sbjct: 161 RALEDKEKGLGEYDVTVTDGALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLE 220

Query: 245 IADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           IA+  L + +   DK G    D+  L+   ++  G  V              A+  L   
Sbjct: 221 IAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDVNA------------ALHYLAR- 265

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
            +I+ G +Q    GR L+ +A++ +G+  P
Sbjct: 266 -LIEAGDLQSI--GRRLLIMAYEDIGLASP 292


>gi|313114009|ref|ZP_07799564.1| recombination factor protein RarA [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310623711|gb|EFQ07111.1| recombination factor protein RarA [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 445

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 72/146 (49%), Gaps = 16/146 (10%)

Query: 22  LRPRTLEEFTGQVEACSNLKVF---IEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL +  GQ    +  +VF   IE+ +     + +++F GP G GKTT+A+++A   
Sbjct: 30  LRPKTLADVCGQQHLLAPGRVFRRTIESGR-----IPNMIFYGPSGTGKTTVARIIAENS 84

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRD-----VLFIDEIHRLSIIVEEILYPAMEDFQ 133
           G+     +G      GD+ A+L ++         +L++DEI  L+   ++ L   +ED  
Sbjct: 85  GMTLHKLNGTSCG-TGDIKAVLKDIGTLAGAGGILLYLDEIQYLNKKQQQSLLECIEDGS 143

Query: 134 LDLMVG--EGPSARSVKINLSRFTLI 157
           + L+    E P        LSR T+ 
Sbjct: 144 VTLIASTTENPYFYIYNALLSRCTVF 169


>gi|167627500|ref|YP_001678000.1| recombination factor protein RarA [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167597501|gb|ABZ87499.1| AAA family-ATPase [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
          Length = 411

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 103/240 (42%), Gaps = 36/240 (15%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+++EE  GQ    S      +      + +  ++  G PG+GKTTLA+++A    + 
Sbjct: 10  LRPQSIEEVIGQEHILSKNGSLTKILAG--DGICSLILCGKPGVGKTTLAKIIASSKQLE 67

Query: 82  FRSTSGPVIAKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
           F   S  V +   D+  L+ + +     VLF+DEIHR +   +++L P +E         
Sbjct: 68  FFELSA-VDSGVKDVKKLIADNQHLGSFVLFLDEIHRFNKSQQDLLLPYVES-------- 118

Query: 140 EGPSARSVKINLSRFTLIAATTR--VGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG-- 195
                        +  LI ATT      L N L  R  I +RL    I + + ++QR   
Sbjct: 119 ------------GKIILIGATTENPTYYLNNALVSRVFI-LRLKRLNISETRKLIQRAIT 165

Query: 196 -----AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
                AK +   + D+    I   S G  R    LL R+   ++  +   + +++ D A+
Sbjct: 166 KDELLAKHS-FEIDDDLYNAIHNYSEGDCRKILNLLERMFLISDRTNTIHLDKDLFDQAV 224


>gi|242239684|ref|YP_002987865.1| recombination factor protein RarA [Dickeya dadantii Ech703]
 gi|242131741|gb|ACS86043.1| AAA ATPase central domain protein [Dickeya dadantii Ech703]
          Length = 447

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 100/225 (44%), Gaps = 31/225 (13%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR--ELG 79
           +RP TL ++ GQ       K    A +A    L  ++  GPPG GKTTLA+++ R  E  
Sbjct: 20  MRPTTLAQYIGQQHLLGPGKPLPRAIEA--GQLHSMILWGPPGTGKTTLAELIGRYGEAD 77

Query: 80  VNFRS--TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           V   S  TSG   I +A + A    N   R +LF+DE+HR +   ++   P +ED  +  
Sbjct: 78  VERISAVTSGIKDIREAVERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVTF 137

Query: 137 M--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL--KTIV 192
           +    E PS       LSR        RV LL +           L+  +IE +  + +V
Sbjct: 138 IGATTENPSFELNSALLSR-------ARVYLLKS-----------LDTADIEQVLAQAMV 179

Query: 193 QRGAKLTG--LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
            R   L G  + + DE    +A    G  R A  LL  + D AEV
Sbjct: 180 DRERGLGGQHIVLPDETRRLLAELVNGDARRALNLLEMMADMAEV 224


>gi|172059904|ref|YP_001807556.1| recombination factor protein RarA [Burkholderia ambifaria MC40-6]
 gi|171992421|gb|ACB63340.1| AAA ATPase central domain protein [Burkholderia ambifaria MC40-6]
          Length = 436

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 69/257 (26%), Positives = 111/257 (43%), Gaps = 38/257 (14%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL E  GQ         L++  E+ K  +     ++  GPPG+GKTTLA++ A   
Sbjct: 17  LRPKTLAEVIGQTHLLGEGKPLRLAFESGKPHS-----MILWGPPGVGKTTLARLTALAF 71

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V+    D+   +   +D         +LF+DEIHR +   ++ L P +E 
Sbjct: 72  DCEFIALSA-VLGGVKDIRESMEQAKDTLNRTGRHTILFVDEIHRFNKGQQDALLPFVES 130

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
             L   +G      S ++N    + + +  +V +L +           LN  E+  L   
Sbjct: 131 -GLVTFIGATTENPSFEVN----SALLSRAQVYVLQS-----------LNDDEMRQLLKR 174

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
            Q  A L GLA  D+A   +   + G  R    LL + +  A  +   TI  +   +A+ 
Sbjct: 175 AQEIA-LDGLAFDDKAVDTLIGYADGDARRFLNLLEQAQTAAASSRITTIDADFVSSAMT 233

Query: 252 RLA--IDKMG---FDQL 263
             A   DK G   +DQ+
Sbjct: 234 LNARRFDKGGDNFYDQI 250


>gi|42783528|ref|NP_980775.1| recombination factor protein RarA [Bacillus cereus ATCC 10987]
 gi|42739457|gb|AAS43383.1| ATPase, AAA family [Bacillus cereus ATCC 10987]
          Length = 428

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 85/330 (25%), Positives = 129/330 (39%), Gaps = 65/330 (19%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  ++E  GQ       K+     +A       ++  GPPG GKT++A  +A   G  
Sbjct: 9   MRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAIAGSTGTP 66

Query: 82  FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
           FR  +  V     D+  ++    +    VL +DE+HRL    ++ L P +E   L     
Sbjct: 67  FRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLL----- 120

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEI----ED-----LK 189
                          TLI ATT     +NP       I  R   +E+    ED     LK
Sbjct: 121 ---------------TLIGATT-----SNPFHAINSAIRSRCQIFELHALTEDDLLIGLK 160

Query: 190 TIVQRGAKLTG---LAVTDEAACEIAMRSRGTPRIAGRLLRR--VRDFAEVAHAKTITRE 244
             ++   K  G   + VT EA    A  S G  R A   L    +  F     A  IT E
Sbjct: 161 RALEDKEKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLE 220

Query: 245 IADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           IA+  L + +   DK G    D+  L+   ++  G  V              A+  L   
Sbjct: 221 IAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDVNA------------ALHYLAR- 265

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
            +I+ G +Q    GR L+ +A++ +G+  P
Sbjct: 266 -LIEAGDLQSI--GRRLLIMAYEDIGLASP 292


>gi|67482225|ref|XP_656462.1| AAA family ATPase [Entamoeba histolytica HM-1:IMSS]
 gi|56473665|gb|EAL51080.1| AAA family ATPase, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 429

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 113/254 (44%), Gaps = 34/254 (13%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+ +E+  GQ++   ++   I         +D ++F GPPG GKTT  +++ R    +F
Sbjct: 34  RPQKIEDVVGQLKVRDDI---IHQVTVLGR-VDSMIFFGPPGCGKTTFCKLIKRHFEKSF 89

Query: 83  RSTSGPVIA-------KAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
               G  I        K G +         + ++FIDEIH +S  V+  L   +++  + 
Sbjct: 90  IELDGNSINTNIVKDFKKGIIKKNKETTHSQTIIFIDEIHCISSTVQNFLIDLIKEKTIC 149

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR- 194
           L+   G + +     LS+  L+    RV +L            RLN  E+  +K I++R 
Sbjct: 150 LI---GTTTQVPSFCLSKELLLFM--RVIVLE-----------RLN--EV-SVKEIIKRA 190

Query: 195 -GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
             A+ +   V+DE   +I   S G  R+A   L ++   AE+     ++ +     + + 
Sbjct: 191 INAEYSKYIVSDEVIDKIVESSDGDGRMALNNLEKLIQCAELEKVNEVSIKFVHEVIGKR 250

Query: 254 AI--DKMGFDQLDL 265
           A+  DK G +  +L
Sbjct: 251 ALNYDKRGDEHYNL 264


>gi|326388123|ref|ZP_08209726.1| recombination factor protein RarA [Novosphingobium nitrogenifigens
           DSM 19370]
 gi|326207289|gb|EGD58103.1| recombination factor protein RarA [Novosphingobium nitrogenifigens
           DSM 19370]
          Length = 443

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 60/118 (50%), Gaps = 15/118 (12%)

Query: 22  LRPRTLEEFTGQVEACS---NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPRTL++  GQ         +   + A K     L  ++  GPPG GKT++A+++A  +
Sbjct: 29  LRPRTLDDVIGQDHLTGPDGAIGRMVAAGK-----LSSMILWGPPGTGKTSIARLLADAV 83

Query: 79  GVNFRSTSGPVIAKAGDL------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           G+ + S S  V +   DL      A  +  L  R +LF+DEIHR +   ++   P +E
Sbjct: 84  GMRYVSISA-VFSGVADLRKAFAEAESMAGLGRRTLLFVDEIHRFNRAQQDGFLPYVE 140


>gi|78059884|ref|YP_366459.1| recombination factor protein RarA [Burkholderia sp. 383]
 gi|77964434|gb|ABB05815.1| Recombination protein MgsA [Burkholderia sp. 383]
          Length = 434

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 60/118 (50%), Gaps = 16/118 (13%)

Query: 22  LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP +L++  GQ     A   L+   E+ K  +     ++F GPPG+GKTTLA++ A+  
Sbjct: 17  LRPTSLDDVIGQAHLLGAGMPLRRAFESGKPHS-----MIFWGPPGVGKTTLARLTAQAF 71

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAM 129
              F + S  V+    D+ A+    +        R ++F+DEIHR +   +  L P++
Sbjct: 72  DCEFAALSA-VLGGVKDIRAVTARAQQLFDEAGRRTIVFVDEIHRFNETQQGALLPSV 128


>gi|14349166|dbj|BAB60709.1| Werner helicase interacting protein [Homo sapiens]
          Length = 665

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 74/151 (49%), Gaps = 21/151 (13%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75
           +RP TL+++ GQ +A      L+  +E  +     +  +   GPPG GKTTLA ++A   
Sbjct: 231 MRPDTLQDYFGQSKAVGQDTLLRSLLETNE-----IPSLNLWGPPGCGKTTLAHIIASNS 285

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPA 128
           ++  + F + S    AK  D+  ++   ++       + +LFIDEIHR +   ++   P 
Sbjct: 286 KKHSIRFVTLSA-TNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPH 344

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLI 157
           +E   + L+    E PS +     LSR  +I
Sbjct: 345 VECGTITLIGATTENPSFQVNAALLSRCRVI 375


>gi|222151512|ref|YP_002560668.1| hypothetical protein MCCL_1265 [Macrococcus caseolyticus JCSC5402]
 gi|222120637|dbj|BAH17972.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 419

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 3/110 (2%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP T+++  GQ        +     +A+   L  ++  GPPG+GKT++AQ +A    + 
Sbjct: 8   MRPNTIDDIIGQAHLVGPRGIIRRMVEAKR--LSSMILYGPPGIGKTSIAQAIAGSTNLK 65

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           FR  +     K    L A    +  + +L +DEIHRL    ++ L P +E
Sbjct: 66  FRQLNAVTNTKKDMQLIAEEAKMSGQVILLLDEIHRLDKGKQDFLLPHLE 115


>gi|166712096|ref|ZP_02243303.1| recombination factor protein RarA [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 458

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 69/138 (50%), Gaps = 16/138 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL++  GQ   +   S L+   E+ +  +     ++  GPPG GKTTLA ++A   
Sbjct: 29  MRPRTLDDMVGQKRLLAPDSALRRAFESGRVHS-----MILWGPPGCGKTTLALLLAHYA 83

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDF 132
              F++ S  V++   ++  +L   +       R VLF+DE+HR +   ++   P +E  
Sbjct: 84  DAEFKAISA-VLSGLPEVRQVLAEADQRFADGRRTVLFVDEVHRFNKAQQDAFLPHIERG 142

Query: 133 QLDLMVGEGPSARSVKIN 150
            + L VG      S ++N
Sbjct: 143 TI-LFVGATTENPSFELN 159


>gi|116333872|ref|YP_795399.1| recombination factor protein RarA [Lactobacillus brevis ATCC 367]
 gi|116099219|gb|ABJ64368.1| Recombination protein MgsA [Lactobacillus brevis ATCC 367]
          Length = 425

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 4/130 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ LE+  GQ +  +  K+   A    A+ L  ++  GPPG GKT++A  +A      
Sbjct: 10  MRPQRLEDIVGQQDLVAPGKII--ARMVAAKLLSSMILYGPPGTGKTSIASAIAGSTQYA 67

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR  +    +K    + A    +    +L +DEIHRL    ++ L P +E  ++ +++G 
Sbjct: 68  FRKLNAATDSKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPHLESGRI-VLIGA 126

Query: 141 GPSARSVKIN 150
                 + IN
Sbjct: 127 TTENPYININ 136


>gi|218295885|ref|ZP_03496665.1| AAA ATPase central domain protein [Thermus aquaticus Y51MC23]
 gi|218243623|gb|EED10151.1| AAA ATPase central domain protein [Thermus aquaticus Y51MC23]
          Length = 419

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/120 (35%), Positives = 59/120 (49%), Gaps = 9/120 (7%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPRTL+E  GQ         L+  +EA +     L  ++  GPPG GKTTLA ++A   
Sbjct: 8   LRPRTLDEVLGQPHLTGERGLLRRMLEAKR-----LASMVLFGPPGTGKTTLAHLLAEGA 62

Query: 79  GVNF-RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           G  F R ++     K    A      E   VLF+DEIHR +   ++ L P +E   L L+
Sbjct: 63  GKPFLRLSAVEAGLKEVRQAVERARQEGGLVLFLDEIHRFNKAQQDALLPHLESGLLTLI 122


>gi|193212966|ref|YP_001998919.1| recombination factor protein RarA [Chlorobaculum parvum NCIB 8327]
 gi|193086443|gb|ACF11719.1| AAA ATPase central domain protein [Chlorobaculum parvum NCIB 8327]
          Length = 452

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 80/163 (49%), Gaps = 26/163 (15%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPR+++E  GQ   V     ++ ++E  +     +  ++F GPPG GKTTLA++ A  L
Sbjct: 34  VRPRSIDELFGQEHLVGPGGPVRSYLEQGR-----IPSMIFWGPPGSGKTTLAEICAGSL 88

Query: 79  GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDV-LFIDEIHRLSIIVEEILYPAMEDF 132
              F   S        + +  ++A    +++ R + LFIDEIHR +   ++ L  A+E  
Sbjct: 89  NYRFEQLSATDAGVKDVRRVLEVAQKSRSIDGRQMLLFIDEIHRFNKAQQDTLLHAIEQ- 147

Query: 133 QLDLMVG---EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
            L +++G   E PS    +  LSR  +         + NPL +
Sbjct: 148 GLIVLIGATTENPSFEVNRALLSRMQV--------YILNPLSE 182


>gi|229186639|ref|ZP_04313800.1| hypothetical protein bcere0004_41820 [Bacillus cereus BGSC 6E1]
 gi|118418782|gb|ABK87201.1| Recombination protein MgsA [Bacillus thuringiensis str. Al Hakam]
 gi|228596898|gb|EEK54557.1| hypothetical protein bcere0004_41820 [Bacillus cereus BGSC 6E1]
          Length = 474

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 88/350 (25%), Positives = 136/350 (38%), Gaps = 65/350 (18%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           ++R+  L   V  +      +RP  ++E  GQ       K+     +A       ++  G
Sbjct: 37  IERDYTLRETVKMKQPLAHRMRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYG 94

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSI 119
           PPG GKT++A  +A   G  FR  +  V     D+  ++    +    VL +DE+HRL  
Sbjct: 95  PPGTGKTSIASAIAGSTGTPFRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDK 153

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPI 178
             ++ L P +E   L                    TLI ATT     +NP       I  
Sbjct: 154 AKQDFLLPHLESGLL--------------------TLIGATT-----SNPFHAINSAIRS 188

Query: 179 RLNFYEI----ED-----LKTIVQRGAKLTG---LAVTDEAACEIAMRSRGTPRIAGRLL 226
           R   +E+    ED     LK  ++   K  G   + VT EA    A  S G  R A   L
Sbjct: 189 RCQIFELHALTEDDLLIGLKRALEDKEKGLGEYDVTVTPEALHHFANASGGDMRSAYNAL 248

Query: 227 RR--VRDFAEVAHAKTITREIADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGI 282
               +  F     A  IT EIA+  L + +   DK G    D+  L+   ++  G  V  
Sbjct: 249 ELAVLSSFTTDDKAAEITLEIAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDVNA 306

Query: 283 ETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
                       A+  L    +I+ G +Q    GR L+ +A++ +G+  P
Sbjct: 307 ------------ALHYLAR--LIEAGDLQSI--GRRLLIMAYEDIGLASP 340


>gi|194017275|ref|ZP_03055887.1| crossover junction endodeoxyribonuclease ATPase [Bacillus pumilus
           ATCC 7061]
 gi|194011143|gb|EDW20713.1| crossover junction endodeoxyribonuclease ATPase [Bacillus pumilus
           ATCC 7061]
          Length = 421

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 58/112 (51%), Gaps = 5/112 (4%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  +E+  GQ       ++     +A+   L  ++  GPPG+GKT++A  +A    + 
Sbjct: 8   MRPSHIEDIIGQEHLVGEGQIIKRMVEAKH--LSSMILYGPPGIGKTSIATAIAGSTSIA 65

Query: 82  FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
           FR+ +  VI    D+ A+     +  + +L +DE+HRL    ++ L P +E+
Sbjct: 66  FRTLNA-VIHNKKDMEAVAAEAKMSGQVILILDEVHRLDKGKQDFLLPYLEN 116


>gi|225869353|ref|YP_002745301.1| ATPase [Streptococcus equi subsp. zooepidemicus]
 gi|225702629|emb|CAX00692.1| putative ATPase [Streptococcus equi subsp. zooepidemicus]
          Length = 423

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 59/126 (46%), Gaps = 18/126 (14%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRT+ E  GQ       K+     KA    L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPRTITEVIGQQHLVGEGKIIDRMVKA--NRLSSMILYGPPGIGKTSIASAIAGTTKYA 66

Query: 82  FRSTSGPV--------IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           FR+ +  +        IA+    +  L       VL +DEIHRL    ++ L P +E   
Sbjct: 67  FRTFNATIDNKKRLQEIAEEAKFSGGL-------VLLLDEIHRLDKSKQDFLLPLLEHGH 119

Query: 134 LDLMVG 139
           + +M+G
Sbjct: 120 I-IMIG 124


>gi|86749444|ref|YP_485940.1| recombination factor protein RarA [Rhodopseudomonas palustris HaA2]
 gi|86572472|gb|ABD07029.1| Recombination protein MgsA [Rhodopseudomonas palustris HaA2]
          Length = 444

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 62/135 (45%), Gaps = 10/135 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPR L +  GQ                R   L  ++F GPPG GKTT+A+++A    ++
Sbjct: 30  LRPRVLADVVGQDHILGPDGALTRMLATRT--LGSLVFWGPPGTGKTTVARLLADATELH 87

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F   S  V +   DL  +      R       +LF+DE+HR +   ++   P MED  + 
Sbjct: 88  FEQISA-VFSGVADLKKVFDAARARREMGRGTLLFVDEVHRFNKAQQDSFLPVMEDGTV- 145

Query: 136 LMVGEGPSARSVKIN 150
           ++VG      S ++N
Sbjct: 146 VLVGATTENPSFELN 160


>gi|325954336|ref|YP_004237996.1| ATPase AAA [Weeksella virosa DSM 16922]
 gi|323436954|gb|ADX67418.1| AAA ATPase central domain protein [Weeksella virosa DSM 16922]
          Length = 424

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 71/155 (45%), Gaps = 26/155 (16%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKAR----AEALDHVLFVGPPGLGKTTLAQVVARE 77
           +RP++L+++  Q           E A  R     + +  ++F GPPG GKTTLAQ++A  
Sbjct: 9   MRPKSLDQYINQKHLLG------ENAPIRMMLQHDMIASMIFWGPPGTGKTTLAQLIAEL 62

Query: 78  LGVNFRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
               F + S           VI KA       T  E   +LFIDEIHR +   ++ L  A
Sbjct: 63  SNRPFYTLSAINAGVKDVREVIDKAKSQNLFTT--EKNPILFIDEIHRFNKSQQDSLLSA 120

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSR---FTLIA 158
           +E   + L+    E PS   V   LSR   +TL A
Sbjct: 121 VEKGYITLIGATTENPSFEVVPALLSRAQVYTLHA 155


>gi|269986185|gb|EEZ92497.1| Replication factor C [Candidatus Parvarchaeum acidiphilum ARMAN-4]
          Length = 315

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 93/235 (39%), Gaps = 36/235 (15%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR-- 76
           I   RP++ +E  GQ E    LK     A A  + + H++  GPPG+GKTT A V+A+  
Sbjct: 5   IEKYRPQSFDEIIGQKEIVEKLK-----AMAEKKEIQHMILSGPPGVGKTTSAVVLAKAV 59

Query: 77  ----------ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
                     EL  +       +  K  + A          ++  DE   L+   ++ L 
Sbjct: 60  FGPDWTQNFIELNASDDRKLSVIQGKVKEFARTKPIDAPFKIILFDEADSLTQEAQQALR 119

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
             ME++                IN  RF    +      +  PLQ R  I +R      E
Sbjct: 120 RMMEEY----------------INTCRFVF--SVNYQSNIIEPLQSRCAI-LRFQPLSKE 160

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           D+   ++R A+   L +  EA   +   SRG  R    L++ + + ++   AK +
Sbjct: 161 DVHKFIKRIAESEKLDIDKEAMDALDYVSRGDLRTLVNLMQSLSNVSKKIDAKAV 215


>gi|15602122|ref|NP_245194.1| recombination factor protein RarA [Pasteurella multocida subsp.
           multocida str. Pm70]
 gi|12720486|gb|AAK02341.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 445

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 60/120 (50%), Gaps = 17/120 (14%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALD--HV---LFVGPPGLGKTTLAQVVAR 76
           +RP T  ++ GQ          I   K   +ALD  HV   +  GPPG GKTTLA+++A 
Sbjct: 20  MRPTTFAQYCGQSH-------LIGEGKPLRKALDAGHVHSMILWGPPGTGKTTLAEIIAH 72

Query: 77  ELGVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
           ++  +       TSG   I +A + A      E R +LF+DE+HR +   ++   P +ED
Sbjct: 73  QIHADVERISAVTSGIKEIREAIERAKENRLAERRTILFVDEVHRFNKSQQDAFLPHIED 132


>gi|296535676|ref|ZP_06897851.1| replication-associated recombination protein A [Roseomonas
           cervicalis ATCC 49957]
 gi|296264000|gb|EFH10450.1| replication-associated recombination protein A [Roseomonas
           cervicalis ATCC 49957]
          Length = 463

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 63/130 (48%), Gaps = 11/130 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPR L E  GQ E     +  I     R  AL  ++  GPPG+GKTT+A+++A   G+ 
Sbjct: 38  LRPRALPEVVGQ-EHLLGPEGAITRMLERG-ALASLILWGPPGVGKTTIARLLAEAAGLR 95

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F + S  V +   DL         R       +LF+DEIHR +   ++   P +ED  + 
Sbjct: 96  FAALSA-VFSGVADLKKAFDEARARRRAGQGTLLFVDEIHRFNRAQQDGFLPVVEDGTVT 154

Query: 136 LM--VGEGPS 143
           L+    E PS
Sbjct: 155 LVGATTENPS 164


>gi|229158015|ref|ZP_04286086.1| hypothetical protein bcere0010_41940 [Bacillus cereus ATCC 4342]
 gi|228625468|gb|EEK82224.1| hypothetical protein bcere0010_41940 [Bacillus cereus ATCC 4342]
          Length = 428

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 85/330 (25%), Positives = 129/330 (39%), Gaps = 65/330 (19%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  ++E  GQ       K+     +A       ++  GPPG GKT++A  +A   G  
Sbjct: 9   MRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAIAGSTGTP 66

Query: 82  FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
           FR  +  V     D+  ++    +    VL +DE+HRL    ++ L P +E   L     
Sbjct: 67  FRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLL----- 120

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEI----ED-----LK 189
                          TLI ATT     +NP       I  R   +E+    ED     LK
Sbjct: 121 ---------------TLIGATT-----SNPFHAINSAIRSRCQIFELHALTEDDLLIGLK 160

Query: 190 TIVQRGAKLTG---LAVTDEAACEIAMRSRGTPRIAGRLLRR--VRDFAEVAHAKTITRE 244
             ++   K  G   + VT EA    A  S G  R A   L    +  F     A  IT E
Sbjct: 161 RALEDKEKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLE 220

Query: 245 IADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           IA+  L + +   DK G    D+  L+   ++  G  V              A+  L   
Sbjct: 221 IAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDVNA------------ALHYLAR- 265

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
            +I+ G +Q    GR L+ +A++ +G+  P
Sbjct: 266 -LIEAGDLQSI--GRRLLIMAYEDIGLASP 292


>gi|162382774|ref|YP_896708.2| recombination factor protein RarA [Bacillus thuringiensis str. Al
           Hakam]
 gi|196044812|ref|ZP_03112046.1| ATPase, AAA family [Bacillus cereus 03BB108]
 gi|225866381|ref|YP_002751759.1| ATPase, AAA family [Bacillus cereus 03BB102]
 gi|196024300|gb|EDX62973.1| ATPase, AAA family [Bacillus cereus 03BB108]
 gi|225786800|gb|ACO27017.1| ATPase, AAA family [Bacillus cereus 03BB102]
          Length = 426

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 85/330 (25%), Positives = 129/330 (39%), Gaps = 65/330 (19%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  ++E  GQ       K+     +A       ++  GPPG GKT++A  +A   G  
Sbjct: 9   MRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAIAGSTGTP 66

Query: 82  FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
           FR  +  V     D+  ++    +    VL +DE+HRL    ++ L P +E   L     
Sbjct: 67  FRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLL----- 120

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEI----ED-----LK 189
                          TLI ATT     +NP       I  R   +E+    ED     LK
Sbjct: 121 ---------------TLIGATT-----SNPFHAINSAIRSRCQIFELHALTEDDLLIGLK 160

Query: 190 TIVQRGAKLTG---LAVTDEAACEIAMRSRGTPRIAGRLLRR--VRDFAEVAHAKTITRE 244
             ++   K  G   + VT EA    A  S G  R A   L    +  F     A  IT E
Sbjct: 161 RALEDKEKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLE 220

Query: 245 IADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           IA+  L + +   DK G    D+  L+   ++  G  V              A+  L   
Sbjct: 221 IAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDVNA------------ALHYLAR- 265

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
            +I+ G +Q    GR L+ +A++ +G+  P
Sbjct: 266 -LIEAGDLQSI--GRRLLIMAYEDIGLASP 292


>gi|229198526|ref|ZP_04325230.1| hypothetical protein bcere0001_40540 [Bacillus cereus m1293]
 gi|228585029|gb|EEK43143.1| hypothetical protein bcere0001_40540 [Bacillus cereus m1293]
          Length = 428

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 85/330 (25%), Positives = 129/330 (39%), Gaps = 65/330 (19%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  ++E  GQ       K+     +A       ++  GPPG GKT++A  +A   G  
Sbjct: 9   MRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAIAGSTGTP 66

Query: 82  FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
           FR  +  V     D+  ++    +    VL +DE+HRL    ++ L P +E   L     
Sbjct: 67  FRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLL----- 120

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEI----ED-----LK 189
                          TLI ATT     +NP       I  R   +E+    ED     LK
Sbjct: 121 ---------------TLIGATT-----SNPFHAINSAIRSRCQIFELHALTEDDLLIGLK 160

Query: 190 TIVQRGAKLTG---LAVTDEAACEIAMRSRGTPRIAGRLLRR--VRDFAEVAHAKTITRE 244
             ++   K  G   + VT EA    A  S G  R A   L    +  F     A  IT E
Sbjct: 161 RALEDKEKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLE 220

Query: 245 IADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           IA+  L + +   DK G    D+  L+   ++  G  V              A+  L   
Sbjct: 221 IAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDVNA------------ALHYLAR- 265

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
            +I+ G +Q    GR L+ +A++ +G+  P
Sbjct: 266 -LIEAGDLQSI--GRRLLIMAYEDIGLASP 292


>gi|227513090|ref|ZP_03943139.1| crossover junction endodeoxyribonuclease [Lactobacillus buchneri
           ATCC 11577]
 gi|227083665|gb|EEI18977.1| crossover junction endodeoxyribonuclease [Lactobacillus buchneri
           ATCC 11577]
          Length = 424

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 61/131 (46%), Gaps = 6/131 (4%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  +EE  GQ +     K+     KA+   L  ++  GPPG GKT++A  +A      
Sbjct: 9   MRPTKIEEIVGQQDLVGPGKIISRMVKAKM--LSSMILYGPPGTGKTSIASAIAGSTKYA 66

Query: 82  FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
           FR  +     K  DL  ++    +    VL +DEIHRL    ++ L P +E   + +++G
Sbjct: 67  FRVLNAATDTKK-DLQVVVEEAKMSGTVVLLLDEIHRLDKTKQDFLLPLLEKGAI-ILIG 124

Query: 140 EGPSARSVKIN 150
                  + IN
Sbjct: 125 ATTENPYININ 135


>gi|218905594|ref|YP_002453428.1| ATPase, AAA family [Bacillus cereus AH820]
 gi|228917033|ref|ZP_04080593.1| hypothetical protein bthur0012_42450 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228929444|ref|ZP_04092465.1| hypothetical protein bthur0010_41290 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|229123940|ref|ZP_04253132.1| hypothetical protein bcere0016_42250 [Bacillus cereus 95/8201]
 gi|301055907|ref|YP_003794118.1| ATPase, AAA family [Bacillus anthracis CI]
 gi|218539593|gb|ACK91991.1| ATPase, AAA family [Bacillus cereus AH820]
 gi|228659242|gb|EEL14890.1| hypothetical protein bcere0016_42250 [Bacillus cereus 95/8201]
 gi|228830232|gb|EEM75848.1| hypothetical protein bthur0010_41290 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228842640|gb|EEM87728.1| hypothetical protein bthur0012_42450 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|300378076|gb|ADK06980.1| ATPase, AAA family [Bacillus cereus biovar anthracis str. CI]
          Length = 428

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 85/330 (25%), Positives = 129/330 (39%), Gaps = 65/330 (19%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  ++E  GQ       K+     +A       ++  GPPG GKT++A  +A   G  
Sbjct: 9   MRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAIAGSTGTP 66

Query: 82  FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
           FR  +  V     D+  ++    +    VL +DE+HRL    ++ L P +E   L     
Sbjct: 67  FRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLL----- 120

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEI----ED-----LK 189
                          TLI ATT     +NP       I  R   +E+    ED     LK
Sbjct: 121 ---------------TLIGATT-----SNPFHAINSAIRSRCQIFELHALTEDDLLIGLK 160

Query: 190 TIVQRGAKLTG---LAVTDEAACEIAMRSRGTPRIAGRLLRR--VRDFAEVAHAKTITRE 244
             ++   K  G   + VT EA    A  S G  R A   L    +  F     A  IT E
Sbjct: 161 RALEDKEKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLE 220

Query: 245 IADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           IA+  L + +   DK G    D+  L+   ++  G  V              A+  L   
Sbjct: 221 IAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDVNA------------ALHYLAR- 265

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
            +I+ G +Q    GR L+ +A++ +G+  P
Sbjct: 266 -LIEAGDLQSI--GRRLLIMAYEDIGLASP 292


>gi|229032049|ref|ZP_04188032.1| hypothetical protein bcere0028_40940 [Bacillus cereus AH1271]
 gi|228729294|gb|EEL80288.1| hypothetical protein bcere0028_40940 [Bacillus cereus AH1271]
          Length = 428

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 85/330 (25%), Positives = 129/330 (39%), Gaps = 65/330 (19%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  ++E  GQ       K+     +A       ++  GPPG GKT++A  +A   G  
Sbjct: 9   MRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAIAGSTGTP 66

Query: 82  FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
           FR  +  V     D+  ++    +    VL +DE+HRL    ++ L P +E   L     
Sbjct: 67  FRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLL----- 120

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEI----ED-----LK 189
                          TLI ATT     +NP       I  R   +E+    ED     LK
Sbjct: 121 ---------------TLIGATT-----SNPFHAINSAIRSRCQIFELHALTEDDLLIGLK 160

Query: 190 TIVQRGAKLTG---LAVTDEAACEIAMRSRGTPRIAGRLLRR--VRDFAEVAHAKTITRE 244
             ++   K  G   + VT EA    A  S G  R A   L    +  F     A  IT E
Sbjct: 161 RALEDKEKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLE 220

Query: 245 IADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           IA+  L + +   DK G    D+  L+   ++  G  V              A+  L   
Sbjct: 221 IAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDVNA------------ALHYLAR- 265

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
            +I+ G +Q    GR L+ +A++ +G+  P
Sbjct: 266 -LIEAGDLQSI--GRRLLIMAYEDIGLASP 292


>gi|324328302|gb|ADY23562.1| recombination factor protein RarA [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 428

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 85/330 (25%), Positives = 129/330 (39%), Gaps = 65/330 (19%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  ++E  GQ       K+     +A       ++  GPPG GKT++A  +A   G  
Sbjct: 9   MRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAIAGSTGTP 66

Query: 82  FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
           FR  +  V     D+  ++    +    VL +DE+HRL    ++ L P +E   L     
Sbjct: 67  FRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLL----- 120

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEI----ED-----LK 189
                          TLI ATT     +NP       I  R   +E+    ED     LK
Sbjct: 121 ---------------TLIGATT-----SNPFHAINSAIRSRCQIFELHALTEDDLLIGLK 160

Query: 190 TIVQRGAKLTG---LAVTDEAACEIAMRSRGTPRIAGRLLRR--VRDFAEVAHAKTITRE 244
             ++   K  G   + VT EA    A  S G  R A   L    +  F     A  IT E
Sbjct: 161 RALEDKEKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLE 220

Query: 245 IADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           IA+  L + +   DK G    D+  L+   ++  G  V              A+  L   
Sbjct: 221 IAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDVNA------------ALHYLAR- 265

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
            +I+ G +Q    GR L+ +A++ +G+  P
Sbjct: 266 -LIEAGDLQSI--GRRLLIMAYEDIGLASP 292


>gi|289450570|ref|YP_003475446.1| recombination factor protein RarA [Clostridiales genomosp. BVAB3
           str. UPII9-5]
 gi|289185117|gb|ADC91542.1| recombination factor protein RarA [Clostridiales genomosp. BVAB3
           str. UPII9-5]
          Length = 433

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 108/231 (46%), Gaps = 29/231 (12%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           + P ++E++ GQ    +    L+  I+  K     L  ++  GPPG GK++LA+V+A   
Sbjct: 10  MAPASVEQYVGQSHLLAPGKLLRRMIDGDK-----LSSIILFGPPGTGKSSLAKVIAATT 64

Query: 79  GVNFRS----TSGPVIAKA--GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
            + F+     T+G    K    D A  L   E + +LFIDEIHR + + ++ L P++E  
Sbjct: 65  KLPFKRLNAVTAGVTDIKQIIADAANPLLTPEGQVILFIDEIHRFNKLQQDALLPSVEA- 123

Query: 133 QLDLMVG---EGPSARSVKINLSRFTL-----IAATTRVGLLTNPLQDRFGIPIRLNFYE 184
            L +++G   E P     K  +SR T+     ++ T  + +L   L    G    L  ++
Sbjct: 124 GLVILIGATTENPYFEVNKALISRATVFQLFPLSETDILTILRRSLTSERG----LAAWQ 179

Query: 185 IEDLKTIVQRGAK-LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
            E  +T +Q  A    G A     A E+A+ S   P  AG L   V D AE
Sbjct: 180 AEVEETALQFIANHCNGDARIALNALELAVCST-QPDAAGTLHVTVNDVAE 229


>gi|33597977|ref|NP_885620.1| recombination factor protein RarA [Bordetella parapertussis 12822]
 gi|33602883|ref|NP_890443.1| recombination factor protein RarA [Bordetella bronchiseptica RB50]
 gi|33574406|emb|CAE38744.1| conserved hypothetical protein [Bordetella parapertussis]
 gi|33577325|emb|CAE35882.1| conserved hypothetical protein [Bordetella bronchiseptica RB50]
          Length = 459

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 66/143 (46%), Gaps = 17/143 (11%)

Query: 22  LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPRTL +  GQ         L+V  ++ +  +     ++F GPPG+GKTTLA+++A   
Sbjct: 35  LRPRTLSDVVGQSHLLGPDKPLRVAFDSGRPHS-----MIFWGPPGVGKTTLARLMADGF 89

Query: 79  GVNFRSTSGPVIAKAGDL------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED- 131
              F + S  V+    D+      A +      R +LF+DE+HR +   ++   P +E  
Sbjct: 90  DAQFIAISA-VLGGVKDIRDAVVTAQVAQGQGRRTILFVDEVHRFNKSQQDAFLPYVESG 148

Query: 132 -FQLDLMVGEGPSARSVKINLSR 153
            F       E PS       LSR
Sbjct: 149 LFTFIGATTENPSFEVNSALLSR 171


>gi|318606281|emb|CBY27779.1| ATPase, AAA family [Yersinia enterocolitica subsp. palearctica Y11]
          Length = 444

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 72/149 (48%), Gaps = 11/149 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP TLE++ GQ    +  K    A  A    L  ++  GPPG GKTTLA+++ R    +
Sbjct: 17  MRPLTLEQYIGQQHLLAPGKPLSRAIVA--GQLHSMILWGPPGTGKTTLAEIIGRYGQAD 74

Query: 82  FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
                  TSG   I +A + A    +   R +LF+DE+HR +   ++   P +ED  +  
Sbjct: 75  VERISAVTSGIKEIREAIERARQNRDAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 134

Query: 137 M--VGEGPS--ARSVKINLSRFTLIAATT 161
           +    E PS    S  ++ +R  L+ A T
Sbjct: 135 IGATTENPSFELNSALLSRARVYLLKALT 163


>gi|58337096|ref|YP_193681.1| recombination factor protein RarA [Lactobacillus acidophilus NCFM]
 gi|227903667|ref|ZP_04021472.1| crossover junction endodeoxyribonuclease [Lactobacillus acidophilus
           ATCC 4796]
 gi|58254413|gb|AAV42650.1| chromosomal segregation helicase [Lactobacillus acidophilus NCFM]
 gi|227868554|gb|EEJ75975.1| crossover junction endodeoxyribonuclease [Lactobacillus acidophilus
           ATCC 4796]
          Length = 439

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 17/124 (13%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ ++E  GQ       K+     +AR   L  ++  GPPG+GKT++A  +A      
Sbjct: 8   MRPKKIDEVVGQQHLIGPGKIIRRMVEARI--LSSMILYGPPGIGKTSIASAIAGSTKYA 65

Query: 82  FRSTSGPV--------IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           FR  +           +A+ G ++  +       +L +DEIHRL    ++ L P +E  Q
Sbjct: 66  FRKLNAATDGKKQLQQVAEEGKMSGTV-------ILLLDEIHRLDKTKQDFLLPLLESGQ 118

Query: 134 LDLM 137
           + L+
Sbjct: 119 IILI 122


>gi|84394177|ref|ZP_00992908.1| hypothetical protein V12B01_03078 [Vibrio splendidus 12B01]
 gi|84375197|gb|EAP92113.1| hypothetical protein V12B01_03078 [Vibrio splendidus 12B01]
          Length = 449

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 89/221 (40%), Gaps = 25/221 (11%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP T+E++ GQ       K    A +A    +  ++  GPPG GKTTLA+V A      
Sbjct: 21  MRPETVEQYIGQQHILGPGKPLRRALEAGH--IHSMILWGPPGTGKTTLAEVAANYANAE 78

Query: 82  FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
               S  V +   D+   +    +      R +LF+DE+HR +   ++   P +ED  + 
Sbjct: 79  VERVSA-VTSGVKDIRIAIEKARENKQAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVT 137

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
            +    E PS       LSR        RV  LT+   D   + IR     IED     Q
Sbjct: 138 FIGATTENPSFELNNALLSR-------ARVYKLTSLHTDDISLVIRQ---AIED----KQ 183

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
           RG         D     +A    G  R++   L  + D AE
Sbjct: 184 RGLGDVTADFADNVLDRLAELVNGDARMSLNYLELLYDMAE 224


>gi|326692254|ref|ZP_08229259.1| recombination factor protein RarA [Leuconostoc argentinum KCTC
           3773]
          Length = 427

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 3/110 (2%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  +EE  GQ       K+      A+   L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPTKIEEIVGQQHLVGEGKIIWRMVAAKR--LSSMILYGPPGIGKTSIASAIAGSSKYA 66

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           FR  +    ++    + A    +    VL +DEIHRL+ + ++ L P +E
Sbjct: 67  FRMLNAATDSQKDLQIVAEEAKMSGAVVLLLDEIHRLNKVKQDFLLPYLE 116


>gi|313157357|gb|EFR56780.1| recombination factor protein RarA [Alistipes sp. HGB5]
          Length = 424

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 71/144 (49%), Gaps = 18/144 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+T++++ GQ   V      + F E        +   +  GPPG+GKTTLA++VA +L
Sbjct: 9   LRPKTIDDYIGQEHLVGKNGVFRKFFETGN-----VPSFILWGPPGVGKTTLAKIVATQL 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V +   D+  ++ + + +         LFIDEIHR +   ++ L  A+E 
Sbjct: 64  ERPFFTLSA-VTSGVKDVREVIESAKKQRFFDAKPPFLFIDEIHRFNKSQQDSLLGAVEQ 122

Query: 132 FQLDLM--VGEGPSARSVKINLSR 153
             + L+    E PS   +   LSR
Sbjct: 123 GTVTLIGATTENPSFEVISPLLSR 146


>gi|311069237|ref|YP_003974160.1| recombination factor protein RarA [Bacillus atrophaeus 1942]
 gi|310869754|gb|ADP33229.1| recombination factor protein RarA [Bacillus atrophaeus 1942]
          Length = 422

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 56/111 (50%), Gaps = 3/111 (2%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  +E+  GQ       K+     +A+   L  ++  GPPG+GKT++A  +A    + 
Sbjct: 8   MRPTKIEDIIGQQHLVGKDKIIGRMVQAKH--LSSMILYGPPGIGKTSIATAIAGSTSIA 65

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
           FR  +  +  K   ++ A    +  + +L +DE+HRL    ++ L P +E+
Sbjct: 66  FRKLNAVINNKKDMEIVAQEAKMSGQVILILDEVHRLDKGKQDFLLPYLEN 116


>gi|296284437|ref|ZP_06862435.1| Microtubule-severing ATPase [Citromicrobium bathyomarinum JL354]
          Length = 411

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 83/201 (41%), Gaps = 46/201 (22%)

Query: 21  LLRPR----TLEEFTGQVEACSNLKVFIEAAKARAEALDHV--------LFVGPPGLGKT 68
           ++ PR    T ++F G     +  K  IE    R + L+ +        LF GPPG GKT
Sbjct: 145 MVEPREGGLTFDDFGGYKGVVARAKELIETQLERRDELEKIGARPVKGILFTGPPGTGKT 204

Query: 69  TLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL--------EDRDVLFIDEIHRLS 118
            LA+++A + G +F   SGP I     GD   LL  +          + ++F DEI    
Sbjct: 205 HLARIIANQAGASFYDISGPAIVSKWLGDTEELLRKIFEHAKSADSGKAIIFFDEIDS-- 262

Query: 119 IIVEEILYPAMEDFQ------LDLMVGEGPSARSVKINLSRFTLIAATTRVG----LLTN 168
            I E     + E  +      L LM G   S  +         +IAAT R       LT 
Sbjct: 263 -IAENRSGDSQESSRRLVAQFLTLMDGFDTSKNAT-------VVIAATNRADALDPALTR 314

Query: 169 P----LQDRFGIPIRLNFYEI 185
           P     +  FG+P  ++ YEI
Sbjct: 315 PGRFDWEIEFGLPDLMDRYEI 335


>gi|195978892|ref|YP_002124136.1| recombination factor protein RarA [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|195975597|gb|ACG63123.1| ATPase AAA family recombination factor RarA [Streptococcus equi
           subsp. zooepidemicus MGCS10565]
          Length = 423

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 59/126 (46%), Gaps = 18/126 (14%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRT+ E  GQ       K+     KA    L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPRTITEVIGQQHLVGEGKIIDRMVKA--NRLSSMILYGPPGIGKTSIASAIAGTTKYA 66

Query: 82  FRSTSGPV--------IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           FR+ +  +        IA+    +  L       VL +DEIHRL    ++ L P +E   
Sbjct: 67  FRTFNATIDNKKRLQEIAEEAKFSGGL-------VLLLDEIHRLDKSKQDFLLPLLEHGH 119

Query: 134 LDLMVG 139
           + +M+G
Sbjct: 120 I-IMIG 124


>gi|170016573|ref|YP_001727492.1| ATPase [Leuconostoc citreum KM20]
 gi|169803430|gb|ACA82048.1| ATPase [Leuconostoc citreum KM20]
          Length = 430

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 94/209 (44%), Gaps = 29/209 (13%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  +E+  GQ     + K+      A+   L  ++  GPPG GKT++A  +A      
Sbjct: 11  MRPNKIEDIVGQQHLVGSGKIIWRMVAAKR--LSSMILYGPPGTGKTSIASAIAGSSKYA 68

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR  +    ++    + A    +    VL +DEIHRL+ + ++ L P +E   + L+   
Sbjct: 69  FRVLNAATDSQKDLQIVAEEAKMSGTVVLLLDEIHRLNKVKQDFLLPHLESGAIILI--- 125

Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK--L 198
           G +  +  IN++    I + T++  +T PL +             +D+K+ V R  K   
Sbjct: 126 GATTENPYINVT--PAIRSRTQIFQVT-PLTE-------------DDIKSAVHRALKDDT 169

Query: 199 TGLA-----VTDEAACEIAMRSRGTPRIA 222
            GL      +TD+A   +A  + G  R A
Sbjct: 170 HGLGKYKVTLTDDAMNHLAQATNGDLRSA 198


>gi|126662272|ref|ZP_01733271.1| ATPase, AAA family protein [Flavobacteria bacterium BAL38]
 gi|126625651|gb|EAZ96340.1| ATPase, AAA family protein [Flavobacteria bacterium BAL38]
          Length = 428

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/108 (37%), Positives = 53/108 (49%), Gaps = 13/108 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG---------PVIAKAGDLAALLTNLEDRD 107
           ++  GPPG GKTTLAQ++A+E    F   S           VI KA   + L T      
Sbjct: 42  LILWGPPGTGKTTLAQIMAQESKRPFYQLSAIHSGVKDIREVIEKAKQSSGLFT--AKNP 99

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSR 153
           +LFIDEIHR S   ++ L  A+E   + L+    E PS   +   LSR
Sbjct: 100 ILFIDEIHRFSKSQQDSLLAAVEKGWITLIGATTENPSFEVIPALLSR 147


>gi|92117125|ref|YP_576854.1| recombination factor protein RarA [Nitrobacter hamburgensis X14]
 gi|91800019|gb|ABE62394.1| Recombination protein MgsA [Nitrobacter hamburgensis X14]
          Length = 446

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 61/135 (45%), Gaps = 10/135 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPR L +  GQ              + R      ++F GPPG GKTT+A+++A    ++
Sbjct: 30  LRPRALSDVVGQDHILGPDGALTRMLETRT--FGSLVFWGPPGTGKTTVARLLADATALH 87

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F   S  V +   DL         R       +LF+DE+HR +   ++   P MED  + 
Sbjct: 88  FEQLSA-VFSGVADLKKAFDAARARRESGTGTLLFVDEVHRFNKAQQDSFLPVMEDGTV- 145

Query: 136 LMVGEGPSARSVKIN 150
           ++VG      S ++N
Sbjct: 146 VLVGATTENPSFELN 160


>gi|305665149|ref|YP_003861436.1| putative AAA family ATPase protein [Maribacter sp. HTCC2170]
 gi|88709901|gb|EAR02133.1| putative AAA family ATPase protein [Maribacter sp. HTCC2170]
          Length = 425

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 62/143 (43%), Gaps = 15/143 (10%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP++L+E+  Q              K     +  ++  GPPG GKTTLA ++A E    
Sbjct: 9   VRPKSLKEYISQNHLVGEAGSLTHQIKKGI--IPSIILWGPPGTGKTTLANIIANESQRP 66

Query: 82  FRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           F   S           VI KA     L T      +LFIDEIHR S   ++ L  A+E  
Sbjct: 67  FYILSAINSGVKDIREVIDKAKQTGGLFT--AKNPILFIDEIHRFSKSQQDSLLGAVEKG 124

Query: 133 QLDLM--VGEGPSARSVKINLSR 153
            + L+    E PS   +   LSR
Sbjct: 125 WVTLIGATTENPSFEVIPALLSR 147


>gi|229093470|ref|ZP_04224573.1| hypothetical protein bcere0021_41940 [Bacillus cereus Rock3-42]
 gi|228689941|gb|EEL43745.1| hypothetical protein bcere0021_41940 [Bacillus cereus Rock3-42]
          Length = 430

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 85/330 (25%), Positives = 129/330 (39%), Gaps = 65/330 (19%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  ++E  GQ       K+     +A       ++  GPPG GKT++A  +A   G  
Sbjct: 9   MRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAIAGSTGTP 66

Query: 82  FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
           FR  +  V     D+  ++    +    VL +DE+HRL    ++ L P +E   L     
Sbjct: 67  FRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLL----- 120

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEI----ED-----LK 189
                          TLI ATT     +NP       I  R   +E+    ED     LK
Sbjct: 121 ---------------TLIGATT-----SNPFHAINSAIRSRCQIFELHALTEDDLLIGLK 160

Query: 190 TIVQRGAKLTG---LAVTDEAACEIAMRSRGTPRIAGRLLRR--VRDFAEVAHAKTITRE 244
             ++   K  G   + VT EA    A  S G  R A   L    +  F     A  IT E
Sbjct: 161 RALEDKEKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLE 220

Query: 245 IADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           IA+  L + +   DK G    D+  L+   ++  G  V              A+  L   
Sbjct: 221 IAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDVNA------------ALHYLAR- 265

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
            +I+ G +Q    GR L+ +A++ +G+  P
Sbjct: 266 -LIEAGDLQSI--GRRLLIMAYEDIGLASP 292


>gi|89891667|ref|ZP_01203170.1| ATPase related to the helicase subunit of the holliday junction
           resolvase [Flavobacteria bacterium BBFL7]
 gi|89516002|gb|EAS18666.1| ATPase related to the helicase subunit of the holliday junction
           resolvase [Flavobacteria bacterium BBFL7]
          Length = 431

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 64/147 (43%), Gaps = 23/147 (15%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALD----HVLFVGPPGLGKTTLAQVVARE 77
           +RP+ L E+  Q           E    R   L+     ++  GPPG GKTTLA ++A+E
Sbjct: 10  IRPQNLSEYLSQNHLVG------ERGTLRQHILNGTIPSLILWGPPGTGKTTLANIIAQE 63

Query: 78  LGVNFRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
               F + S           VI KA     L T      +LFIDEIHR S   ++ L  A
Sbjct: 64  SKRPFYTLSAINSGVKDVREVIDKAKSAGGLFT--AKNPILFIDEIHRFSKSQQDSLLAA 121

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSR 153
           +E   + L+    E PS   +   LSR
Sbjct: 122 VEKGWVTLIGATTENPSFEVIPALLSR 148


>gi|94991276|ref|YP_599376.1| recombination factor protein RarA [Streptococcus pyogenes
           MGAS10270]
 gi|94544784|gb|ABF34832.1| ATPase, AAA family [Streptococcus pyogenes MGAS10270]
          Length = 422

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+T+ E  GQ       K+     +A    L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPKTISEVIGQKHLVGEGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTRYA 66

Query: 82  FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +  + +K       + A     L    VL +DEIHRL  I ++ L P +E+  + +
Sbjct: 67  FRTFNATIDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKIKQDFLLPLLENGTI-I 121

Query: 137 MVG 139
           M+G
Sbjct: 122 MIG 124


>gi|134299288|ref|YP_001112784.1| recombination factor protein RarA [Desulfotomaculum reducens MI-1]
 gi|134051988|gb|ABO49959.1| Recombination protein MgsA [Desulfotomaculum reducens MI-1]
          Length = 438

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 8/102 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR++++F GQ       K+   A +A  + L  ++  GPPG GKTTLA +++     N
Sbjct: 20  MRPRSIDDFIGQEHIVGKGKLLRRAIEA--DKLGSIILYGPPGSGKTTLATIISEMTEAN 77

Query: 82  F---RSTSGPVIAKAGDLAALLTNLE---DRDVLFIDEIHRL 117
           F    + S  V     ++     NL     R + FIDEIH L
Sbjct: 78  FVKINAVSAGVAEIRTEIKKARDNLNFYGKRTIFFIDEIHSL 119


>gi|322411007|gb|EFY01915.1| recombination factor protein RarA [Streptococcus dysgalactiae
           subsp. dysgalactiae ATCC 27957]
          Length = 429

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+T+ E  GQ       K+     +A    L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPKTISEVIGQEHLVGEGKIIHRMVEA--NMLSSMILYGPPGIGKTSIASAIAGTTKYA 66

Query: 82  FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +  V +K       + A     L    VL +DEIHRL    ++ L P +E+  + +
Sbjct: 67  FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLENGTI-I 121

Query: 137 MVG 139
           M+G
Sbjct: 122 MIG 124


>gi|91782394|ref|YP_557600.1| recombination factor protein RarA [Burkholderia xenovorans LB400]
 gi|296162243|ref|ZP_06845038.1| AAA ATPase central domain protein [Burkholderia sp. Ch1-1]
 gi|91686348|gb|ABE29548.1| Recombination protein MgsA [Burkholderia xenovorans LB400]
 gi|295887510|gb|EFG67333.1| AAA ATPase central domain protein [Burkholderia sp. Ch1-1]
          Length = 437

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 75/264 (28%), Positives = 119/264 (45%), Gaps = 54/264 (20%)

Query: 22  LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPR ++E  GQ         L+V  E+ +A +     ++  GPPG+GKTTLA+++A   
Sbjct: 15  LRPRNIDEVIGQKHLLGPNKPLRVAFESGEAHS-----MILWGPPGVGKTTLARLMADAF 69

Query: 79  GVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
              F + S  +     I +A + A +      + ++F+DE+HR +   ++   P +E   
Sbjct: 70  HAEFIALSAVLSGVKDIREAVETAQIHRANGHQTLVFVDEVHRFNKSQQDAFLPHVES-G 128

Query: 134 LDLMVGEGPSARSVKIN---LSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           L + VG      S ++N   LSR    AA   +  LT+                 E+ + 
Sbjct: 129 LFVFVGATTENPSFEVNSALLSR----AAVYVLKSLTD-----------------EEQRE 167

Query: 191 IVQRGAK-LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
           +++R  K L GL  TDEA   +   + G  R   +LL  +   A  A  +  T EI D A
Sbjct: 168 LLERAQKELGGLTFTDEARDALIGSADGDGR---KLLNNLEIVARAASQQKTT-EI-DGA 222

Query: 250 LLRLAI-------DKMG---FDQL 263
           LL  A+       DK G   +DQ+
Sbjct: 223 LLGSALAENLRRFDKGGDAFYDQI 246


>gi|33593454|ref|NP_881098.1| recombination factor protein RarA [Bordetella pertussis Tohama I]
 gi|33572810|emb|CAE42743.1| conserved hypothetical protein [Bordetella pertussis Tohama I]
 gi|332382863|gb|AEE67710.1| recombination factor protein RarA [Bordetella pertussis CS]
          Length = 446

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 66/143 (46%), Gaps = 17/143 (11%)

Query: 22  LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPRTL +  GQ         L+V  ++ +  +     ++F GPPG+GKTTLA+++A   
Sbjct: 22  LRPRTLSDVVGQSHLLGPDKPLRVAFDSGRPHS-----MIFWGPPGVGKTTLARLMADGF 76

Query: 79  GVNFRSTSGPVIAKAGDL------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED- 131
              F + S  V+    D+      A +      R +LF+DE+HR +   ++   P +E  
Sbjct: 77  DAQFIAISA-VLGGVKDIRDAVVTAQVAQGQGRRTILFVDEVHRFNKSQQDAFLPYVESG 135

Query: 132 -FQLDLMVGEGPSARSVKINLSR 153
            F       E PS       LSR
Sbjct: 136 LFTFIGATTENPSFEVNSALLSR 158


>gi|323466848|gb|ADX70535.1| ATPase, AAA family [Lactobacillus helveticus H10]
          Length = 437

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 3/117 (2%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L++  GQ     + K+     +AR   L  ++  GPPG+GKT++A  +A      
Sbjct: 8   MRPQNLDQVVGQQHLIGSGKIIRRMVEARL--LSSMILYGPPGIGKTSIASAIAGSTKYA 65

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           FR  +     K      A    +    +L +DEIHRL    ++ L P +E  Q+ L+
Sbjct: 66  FRKLNAATDGKKQLQQVAAEGKMSGTVILLLDEIHRLDKTKQDFLLPLLESGQIILI 122


>gi|315179811|gb|ADT86725.1| recombination factor protein RarA [Vibrio furnissii NCTC 11218]
          Length = 449

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 9/147 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+T+E++ GQ       K    A +A    +  ++  GPPG GKTTLA+V A      
Sbjct: 21  MRPQTVEQYIGQQHVLGPGKPLRRALEAGH--IHSMILWGPPGTGKTTLAEVAANYANAE 78

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-----RDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
               S          AA+    E+     R +LF+DE+HR +   ++   P +ED  +  
Sbjct: 79  VERVSAVTSGVKEIRAAIEKARENKLAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVTF 138

Query: 137 M--VGEGPSARSVKINLSRFTLIAATT 161
           +    E PS       LSR  +   T+
Sbjct: 139 IGATTENPSFELNNALLSRARVYKLTS 165


>gi|91977623|ref|YP_570282.1| recombination factor protein RarA [Rhodopseudomonas palustris
           BisB5]
 gi|91684079|gb|ABE40381.1| Recombination protein MgsA [Rhodopseudomonas palustris BisB5]
          Length = 443

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 62/135 (45%), Gaps = 10/135 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPR L +  GQ                R   L  ++F GPPG GKTT+A+++A    ++
Sbjct: 30  LRPRALGDVVGQDHILGPDGALTRMLATRT--LGSLVFWGPPGTGKTTVARLLADATELH 87

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F   S  V +   DL  +      R       +LF+DE+HR +   ++   P MED  + 
Sbjct: 88  FEQISA-VFSGVADLKKVFDAARARREMGTGTLLFVDEVHRFNKAQQDSFLPVMEDGTV- 145

Query: 136 LMVGEGPSARSVKIN 150
           ++VG      S ++N
Sbjct: 146 VLVGATTENPSFELN 160


>gi|116670830|ref|YP_831763.1| recombination factor protein RarA [Arthrobacter sp. FB24]
 gi|116610939|gb|ABK03663.1| Recombination protein MgsA [Arthrobacter sp. FB24]
          Length = 474

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 65/137 (47%), Gaps = 16/137 (11%)

Query: 22  LRPRTLEEFTGQVE------ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +RPRTL++  GQ            L     A  A       ++  GPPG GKTTLA V+A
Sbjct: 43  MRPRTLDDVVGQQHLLGQGSPLRQLAAGAGADSAGPAGPTSLILWGPPGTGKTTLAHVIA 102

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTN-LEDRD------VLFIDEIHRLSIIVEEILYPA 128
           +  G  F   S  + A   D+  ++ + L  RD      VLF+DEIHR +   ++ L P 
Sbjct: 103 KGPGRKFVELSA-ITAGVKDVRRVMDDALTARDLYKTTTVLFLDEIHRFNKAQQDALLPG 161

Query: 129 MEDFQLDLMVG--EGPS 143
           +E+  + L+    E PS
Sbjct: 162 VENRWVVLVAATTENPS 178


>gi|238789330|ref|ZP_04633117.1| Replication-associated recombination protein A [Yersinia
           frederiksenii ATCC 33641]
 gi|238722662|gb|EEQ14315.1| Replication-associated recombination protein A [Yersinia
           frederiksenii ATCC 33641]
          Length = 444

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 72/149 (48%), Gaps = 11/149 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP TLE++ GQ    +  K    A  A    L  ++  GPPG GKTTLA+++ R    +
Sbjct: 17  MRPLTLEQYIGQQHLLAPGKPLPRAIVA--GQLHSMILWGPPGTGKTTLAEIIGRYGQAD 74

Query: 82  FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
                  TSG   I +A + A    +   R +LF+DE+HR +   ++   P +ED  +  
Sbjct: 75  VERISAVTSGIKEIREAIERARQNRDAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 134

Query: 137 M--VGEGPS--ARSVKINLSRFTLIAATT 161
           +    E PS    S  ++ +R  L+ A T
Sbjct: 135 IGATTENPSFELNSALLSRARVYLLKALT 163


>gi|319941979|ref|ZP_08016300.1| AAA ATPase central domain-containing protein [Sutterella
           wadsworthensis 3_1_45B]
 gi|319804632|gb|EFW01502.1| AAA ATPase central domain-containing protein [Sutterella
           wadsworthensis 3_1_45B]
          Length = 468

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 80/164 (48%), Gaps = 18/164 (10%)

Query: 22  LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP+TL+E  GQ +     + L+V  E  +  +     ++  GPPG+GKTT+A+++A   
Sbjct: 41  MRPQTLDEVIGQKKLLGPGAPLRVAFENRRPHS-----MILWGPPGVGKTTIARLMANAF 95

Query: 79  GVNFRSTSGPV-----IAKAGDLAA-LLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
            + F + S  +     I +A D A   L   +   V+F+DE+HR S   ++   P +E  
Sbjct: 96  DLPFIAISAVLGGVKDIREAVDAAKQTLAATQRPTVVFVDEVHRFSKSQQDAFLPHVES- 154

Query: 133 QLDLMVG---EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
            L + VG   E PS   V   LSR T+    +     T  L DR
Sbjct: 155 GLFIFVGATTENPSFEVVNALLSRATVYQLESLSKEETGELIDR 198


>gi|296185466|ref|ZP_06853876.1| recombination factor protein RarA [Clostridium carboxidivorans P7]
 gi|296050300|gb|EFG89724.1| recombination factor protein RarA [Clostridium carboxidivorans P7]
          Length = 421

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 68/139 (48%), Gaps = 10/139 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L+E  GQ       K+  +   +    L +++F GPPG GKTT+A ++A   G  
Sbjct: 8   IRPKNLDEVIGQKHLLGEGKILQDMISSGH--LMNMIFYGPPGTGKTTVANIIASATGKK 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLE-----DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           F   +    +   D+  ++ +L      +  +L+IDEIH  +  +++ L   +E+ Q+ L
Sbjct: 66  FYKLNATTDS-LKDIKDIIKDLNTIMGYNGVILYIDEIHHFTKRIQQSLLEFIENGQITL 124

Query: 137 M--VGEGPSARSVKINLSR 153
           +    E P     K  LSR
Sbjct: 125 IGSTTENPYFYIFKAILSR 143


>gi|330466933|ref|YP_004404676.1| recombination factor protein RarA [Verrucosispora maris AB-18-032]
 gi|328809904|gb|AEB44076.1| recombination factor protein RarA [Verrucosispora maris AB-18-032]
          Length = 503

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 83/185 (44%), Gaps = 26/185 (14%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP TL+E  GQ   +   + L+  +       +A   V+  GPPG GKTT+A +VA   
Sbjct: 41  MRPATLDELVGQDHLLAPGAPLRQLVTG-----DAPMSVILWGPPGSGKTTIAHLVAAAT 95

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131
              F + S  + A   D+ A++     +        VLFIDE+HR S   ++ L  A+ED
Sbjct: 96  DRRFVAMSA-LSAGVKDVRAVIDTARRQRRSGGPPTVLFIDEVHRFSKTQQDSLLAAVED 154

Query: 132 FQLDLMVG--EGPSARSVKINLSRFTLIA------ATTRVGLLTNPLQDRFGIPIRLNF- 182
             + L+    E P    +   LSR  L+       A  R GLL   + D  G+   L   
Sbjct: 155 RTVTLLAATTENPYFSVISPLLSRCVLLTLQPLDDAAVR-GLLRRAMTDERGLAGALTLD 213

Query: 183 YEIED 187
            E ED
Sbjct: 214 SEAED 218


>gi|332162218|ref|YP_004298795.1| recombination factor protein RarA [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325666448|gb|ADZ43092.1| recombination factor protein RarA [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 444

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 72/149 (48%), Gaps = 11/149 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP TLE++ GQ    +  K    A  A    L  ++  GPPG GKTTLA+++ R    +
Sbjct: 17  MRPLTLEQYIGQQHLLAPGKPLPRAIVA--GQLHSMILWGPPGTGKTTLAEIIGRYGQAD 74

Query: 82  FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
                  TSG   I +A + A    +   R +LF+DE+HR +   ++   P +ED  +  
Sbjct: 75  VERISAVTSGIKEIREAIERARQNRDAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 134

Query: 137 M--VGEGPS--ARSVKINLSRFTLIAATT 161
           +    E PS    S  ++ +R  L+ A T
Sbjct: 135 IGATTENPSFELNSALLSRARVYLLKALT 163


>gi|327439662|dbj|BAK16027.1| ATPase [Solibacillus silvestris StLB046]
          Length = 426

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 66/260 (25%), Positives = 111/260 (42%), Gaps = 53/260 (20%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRT+ E  GQ   + + + L   IE     +     +L  GPPG+GKT++A  +A   
Sbjct: 10  MRPRTIHEVVGQQHIIGSATPLFRMIEKGHVPS-----MLLYGPPGVGKTSIANAIAGSS 64

Query: 79  GVNFRSTSGPVIAKAGDLAALLTN--LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
            + F + +     K  D+  ++ +  +  + +LF+DEIHR + + ++ L P +E+     
Sbjct: 65  KIPFFALNATHAGKK-DIEQIVMDARMSGKVLLFLDEIHRFNKLQQDTLLPHVEN----- 118

Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-------RFGIPIRLNFYEIEDLK 189
                              LI ATT      NP  D       R G  ++L     +D+ 
Sbjct: 119 ---------------GSIVLIGATTE-----NPFHDVNPAIRSRCGEILQLERLTGDDII 158

Query: 190 TIV-------QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            ++       +RG     + +T++   +IA  S G  R A  LL  V   ++     TI 
Sbjct: 159 QLLNQALADKERGLGHLEIDITEQQIEKIANASNGDARKALTLLESVYYASDEKDGVTII 218

Query: 243 REIA-DAALLRLAI--DKMG 259
            + A DA   R+ +  DK G
Sbjct: 219 NDNAIDALAKRIGVFGDKGG 238


>gi|300722522|ref|YP_003711812.1| putative polynucleotide enzyme with nucleotide triphosphate
           hydrolase domain [Xenorhabdus nematophila ATCC 19061]
 gi|297629029|emb|CBJ89614.1| putative polynucleotide enzyme with nucleotide triphosphate
           hydrolase domain [Xenorhabdus nematophila ATCC 19061]
          Length = 447

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 62/129 (48%), Gaps = 9/129 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP TL+ + GQ    +  K    A   RA  L  ++  GPPG GKTTLA+++      +
Sbjct: 20  MRPVTLDNYIGQSHLLAEGKPLSRAI--RAGHLHSMILWGPPGTGKTTLAEIMGYYAQAD 77

Query: 82  FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
                  TSG   I ++ + A    N   R +LF+DE+HR +   ++   P +ED  +  
Sbjct: 78  IERISAVTSGIKEIRESIEKARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 137

Query: 137 M--VGEGPS 143
           +    E PS
Sbjct: 138 IGATTENPS 146


>gi|238020918|ref|ZP_04601344.1| hypothetical protein GCWU000324_00815 [Kingella oralis ATCC 51147]
 gi|237867898|gb|EEP68904.1| hypothetical protein GCWU000324_00815 [Kingella oralis ATCC 51147]
          Length = 436

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 57/115 (49%), Gaps = 9/115 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPRTL E  GQ E  +     +  A A  E    +L+ G  G+GKTTLA++VA+     
Sbjct: 17  LRPRTLAEVLGQ-EHLTGAGKPLAVALASGEPHSMILW-GSAGIGKTTLARIVAQGFDAQ 74

Query: 82  FRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAME 130
           F   S  V +   D+   +T  E       R +LF+DE+HR +   ++   P +E
Sbjct: 75  FLPISA-VFSGVKDIREAITQAEMAWQRGKRTILFVDEVHRFNKAQQDAFLPHVE 128


>gi|327311517|ref|YP_004338414.1| replication factor C small subunit [Thermoproteus uzoniensis
          768-20]
 gi|326947996|gb|AEA13102.1| replication factor C small subunit [Thermoproteus uzoniensis
          768-20]
          Length = 328

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/56 (48%), Positives = 35/56 (62%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RPR+ EE     E  + LK F++A       + H+LF GPPG GKTT+A V+AREL
Sbjct: 13 RPRSFEEVVDLEEVKARLKEFVKAGN-----MPHLLFYGPPGTGKTTMALVLAREL 63


>gi|291301352|ref|YP_003512630.1| AAA ATPase central domain-containing protein [Stackebrandtia
           nassauensis DSM 44728]
 gi|290570572|gb|ADD43537.1| AAA ATPase central domain protein [Stackebrandtia nassauensis DSM
           44728]
          Length = 448

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 69/148 (46%), Gaps = 18/148 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP TL+E  GQ   +   S L+  +       +A   V+  GPPG GKTT+A +VAR  
Sbjct: 29  MRPATLDELVGQQHLLTPGSPLRQLVGG-----DAPLSVILWGPPGCGKTTVANLVARAT 83

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMED 131
              +   S  + A   D+ A++              VLFIDE+HR +   ++ L  A+ED
Sbjct: 84  DRRYVPMSA-LNAGVKDVRAVIETARATRRRGGAPTVLFIDEVHRFTKTQQDALLAAVED 142

Query: 132 FQLDLMVG--EGPSARSVKINLSRFTLI 157
             + L+    E P    V   LSR  L+
Sbjct: 143 RTITLLAATTENPYFSVVSPLLSRCVLL 170


>gi|115350891|ref|YP_772730.1| recombination factor protein RarA [Burkholderia ambifaria AMMD]
 gi|115280879|gb|ABI86396.1| Recombination protein MgsA [Burkholderia ambifaria AMMD]
          Length = 436

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 115/259 (44%), Gaps = 42/259 (16%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL E  GQ         L++  E+ K  +     ++  GPPG+GKTTLA++ A   
Sbjct: 17  LRPKTLAEVIGQTHLLGEGKPLRLAFESGKPHS-----MILWGPPGVGKTTLARLTALAF 71

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V+    D+   +   +D         +LF+DEIHR +   ++ L P +E 
Sbjct: 72  DCEFIALSA-VLGGVKDIRESMEQAKDTLNRTGRHTILFVDEIHRFNKGQQDALLPFVES 130

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
             L   +G      S ++N    + + +  +V +L + L D             ++++ +
Sbjct: 131 -GLVTFIGATTENPSFEVN----SALLSRAQVYVLQS-LSD-------------DEMRQL 171

Query: 192 VQRGAK--LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
           ++R  +  L GLA  D+A   +   + G  R    LL + +  A  +   TI  +   +A
Sbjct: 172 LKRAQEIALDGLAFDDKAVDTLIGYADGDARRFLNLLEQAQTAAASSRITTIDADFVSSA 231

Query: 250 LLRLA--IDKMG---FDQL 263
           +   A   DK G   +DQ+
Sbjct: 232 MTLNARRFDKGGDNFYDQI 250


>gi|297538757|ref|YP_003674526.1| AAA ATPase central domain-containing protein [Methylotenera sp.
           301]
 gi|297258104|gb|ADI29949.1| AAA ATPase central domain protein [Methylotenera sp. 301]
          Length = 444

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 14/118 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL+E  GQ   + A   L++  ++ K     L  ++  GPPG+GKTTLA+++A   
Sbjct: 18  LRPKTLDEVVGQSHLLAANKPLRLAFQSGK-----LPSMILWGPPGVGKTTLARLIANTA 72

Query: 79  GVNFRSTSGPV-----IAKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAME 130
             +F   S  +     I +A + A L+     R  +LF+DE+HR +   ++   P +E
Sbjct: 73  EADFIPISAVLSGIKDIREAVERAELILQQHGRKTILFVDEVHRFNKGQQDAFLPFVE 130


>gi|238763313|ref|ZP_04624277.1| Replication-associated recombination protein A [Yersinia
           kristensenii ATCC 33638]
 gi|238698412|gb|EEP91165.1| Replication-associated recombination protein A [Yersinia
           kristensenii ATCC 33638]
          Length = 447

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 72/149 (48%), Gaps = 11/149 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP TLE++ GQ    +  K    A  A    L  ++  GPPG GKTTLA+++ R    +
Sbjct: 20  MRPLTLEQYIGQQHLLAPGKPLPRAIVA--GQLHSMILWGPPGTGKTTLAEIIGRYGQAD 77

Query: 82  FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
                  TSG   I +A + A    +   R +LF+DE+HR +   ++   P +ED  +  
Sbjct: 78  VERISAVTSGIKEIREAIERARQNRDAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 137

Query: 137 M--VGEGPS--ARSVKINLSRFTLIAATT 161
           +    E PS    S  ++ +R  L+ A T
Sbjct: 138 IGATTENPSFELNSALLSRARVYLLKALT 166


>gi|227877291|ref|ZP_03995364.1| crossover junction endodeoxyribonuclease [Lactobacillus crispatus
           JV-V01]
 gi|256842853|ref|ZP_05548341.1| recombination factor protein RarA [Lactobacillus crispatus
           125-2-CHN]
 gi|256848783|ref|ZP_05554217.1| recombination factor protein RarA [Lactobacillus crispatus
           MV-1A-US]
 gi|262045819|ref|ZP_06018783.1| recombination factor protein RarA [Lactobacillus crispatus
           MV-3A-US]
 gi|293381688|ref|ZP_06627669.1| recombination factor protein RarA [Lactobacillus crispatus 214-1]
 gi|227863147|gb|EEJ70593.1| crossover junction endodeoxyribonuclease [Lactobacillus crispatus
           JV-V01]
 gi|256614273|gb|EEU19474.1| recombination factor protein RarA [Lactobacillus crispatus
           125-2-CHN]
 gi|256714322|gb|EEU29309.1| recombination factor protein RarA [Lactobacillus crispatus
           MV-1A-US]
 gi|260573778|gb|EEX30334.1| recombination factor protein RarA [Lactobacillus crispatus
           MV-3A-US]
 gi|290921735|gb|EFD98756.1| recombination factor protein RarA [Lactobacillus crispatus 214-1]
          Length = 435

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 58/124 (46%), Gaps = 17/124 (13%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  L+E  GQ       K+     +AR   L  ++  GPPG+GKT++A  +A      
Sbjct: 8   MRPTNLDEVVGQRHLIGPGKIIRRMVEARL--LSSMILYGPPGIGKTSIASAIAGSTKYA 65

Query: 82  FRSTSGPV--------IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           FR  +           +A+ G ++  +       VL +DEIHRL    ++ L P +E  Q
Sbjct: 66  FRKLNAATDGKKQLQQVAEEGKMSGTV-------VLLLDEIHRLDKTKQDFLLPLLESGQ 118

Query: 134 LDLM 137
           + L+
Sbjct: 119 IILI 122


>gi|123441839|ref|YP_001005822.1| recombination factor protein RarA [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122088800|emb|CAL11606.1| putative ATPase protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 447

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 72/149 (48%), Gaps = 11/149 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP TLE++ GQ    +  K    A  A    L  ++  GPPG GKTTLA+++ R    +
Sbjct: 20  MRPLTLEQYIGQQHLLAPGKPLPRAIVA--GQLHSMILWGPPGTGKTTLAEIIGRYGQAD 77

Query: 82  FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
                  TSG   I +A + A    +   R +LF+DE+HR +   ++   P +ED  +  
Sbjct: 78  VERISAVTSGIKEIREAIERARQNRDAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 137

Query: 137 M--VGEGPS--ARSVKINLSRFTLIAATT 161
           +    E PS    S  ++ +R  L+ A T
Sbjct: 138 IGATTENPSFELNSALLSRARVYLLKALT 166


>gi|302498881|ref|XP_003011437.1| hypothetical protein ARB_02287 [Arthroderma benhamiae CBS 112371]
 gi|291174988|gb|EFE30797.1| hypothetical protein ARB_02287 [Arthroderma benhamiae CBS 112371]
          Length = 551

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 80/167 (47%), Gaps = 21/167 (12%)

Query: 9   SRNVSQEDADIS-LLRPRTLEEFTGQVEACSN--LKVFIEAAKARAEALDHVLFVGPPGL 65
           S N  Q+ A ++  +RPRTL+E  GQ     N  L+  IE  +     +  ++  G  G 
Sbjct: 132 SSNALQKSAPLAERMRPRTLDEMCGQELVGENGVLRGLIERDR-----VPSMILWGSAGT 186

Query: 66  GKTTLAQVVARELGVNF---RSTSGPVIAKAGDLAALLTN----LEDRDVLFIDEIHRLS 118
           GKTTLA+V+A  +G  F    STS  V A+   L A   N       + ++F DEIHR S
Sbjct: 187 GKTTLARVIASMVGSRFVEINSTSSGV-AECKKLFAEAKNELSLTGRKTIIFCDEIHRFS 245

Query: 119 IIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSR---FTLIAAT 160
              +++    +E  Q+ L+    E PS +     LSR   FTL   T
Sbjct: 246 KSQQDVFLGPVESGQVTLIGATTENPSFKVQNALLSRCRTFTLAKLT 292


>gi|260768112|ref|ZP_05877046.1| ATPase AAA family [Vibrio furnissii CIP 102972]
 gi|260616142|gb|EEX41327.1| ATPase AAA family [Vibrio furnissii CIP 102972]
          Length = 449

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 9/147 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+T+E++ GQ       K    A +A    +  ++  GPPG GKTTLA+V A      
Sbjct: 21  MRPQTVEQYIGQQHVLGPGKPLRRALEAGH--IHSMILWGPPGTGKTTLAEVAANYANAE 78

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-----RDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
               S          AA+    E+     R +LF+DE+HR +   ++   P +ED  +  
Sbjct: 79  VERVSAVTSGVKEIRAAIEKARENKLAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVTF 138

Query: 137 M--VGEGPSARSVKINLSRFTLIAATT 161
           +    E PS       LSR  +   T+
Sbjct: 139 IGATTENPSFELNNALLSRARVYKLTS 165


>gi|260578811|ref|ZP_05846718.1| AAA family ATPase [Corynebacterium jeikeium ATCC 43734]
 gi|258603109|gb|EEW16379.1| AAA family ATPase [Corynebacterium jeikeium ATCC 43734]
          Length = 464

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 17/133 (12%)

Query: 22  LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPR+L+E  GQ +     S L+  I+           V+  GPPG GKTT+A ++++  
Sbjct: 41  MRPRSLDEVVGQDKVLGPGSPLRRLIDG-----HGDTSVILYGPPGTGKTTIASLISQAS 95

Query: 79  GVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           G  F + S  + +   ++ A++        L +  VLFIDE+HR S   ++ L  A+E+ 
Sbjct: 96  GRRFEALSA-LNSGVKEVRAIIEQARKRLVLGEHTVLFIDEVHRFSKTQQDALLSAVENR 154

Query: 133 QLDLMVG--EGPS 143
            + L+    E PS
Sbjct: 155 TVLLVAATTENPS 167


>gi|34496831|ref|NP_901046.1| recombination factor protein RarA [Chromobacterium violaceum ATCC
           12472]
 gi|34102686|gb|AAQ59051.1| probable ATPase associated with chromosome architecture
           [Chromobacterium violaceum ATCC 12472]
          Length = 443

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 79/324 (24%), Positives = 135/324 (41%), Gaps = 53/324 (16%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+ L++  GQ   +     L + + + K  +     ++  GPPG+GKTTLA+++A   
Sbjct: 17  LRPQALDQVIGQQHLIGPGKPLSLAVASGKPHS-----MILWGPPGVGKTTLARILAASF 71

Query: 79  GVNFRSTSGPVIAKAGDL-------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
              F   S  V A   D+        A+L     R +LF+DE+HR +   ++   P +E 
Sbjct: 72  DAEFIPISA-VFAGVKDIREAVEKAHAVLQRSGRRTILFVDEVHRFNKSQQDAFLPFVES 130

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
             L   +G      S ++N    + + +  +V +L +  +D           E++ L   
Sbjct: 131 -GLITFIGATTENPSFEVN----SALLSRAQVYVLNSLSED-----------ELKQLFAR 174

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
            +    L GL   D A   +   + G  R    LL + R  A+        R +AD    
Sbjct: 175 ARTEGALDGLNFDDAAVSTLTGYADGDARRFLNLLEQTRTAAQA-------RGVAD---- 223

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFG-GGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
              ID    +++    LT+ AR F  GG    + ISA     R +  D    ++ +    
Sbjct: 224 ---IDPGFLEEV----LTLNARRFDKGGDAFYDQISALHKSVRGSNPDAALYWLSRMLDG 276

Query: 311 QRTPR--GRLLMPIAWQHLGIDIP 332
              PR   R ++ +AW+ +G+  P
Sbjct: 277 GADPRYLARRIVRMAWEDIGLADP 300


>gi|327295304|ref|XP_003232347.1| AAA family ATPase [Trichophyton rubrum CBS 118892]
 gi|326465519|gb|EGD90972.1| AAA family ATPase [Trichophyton rubrum CBS 118892]
          Length = 550

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 80/167 (47%), Gaps = 21/167 (12%)

Query: 9   SRNVSQEDADIS-LLRPRTLEEFTGQVEACSN--LKVFIEAAKARAEALDHVLFVGPPGL 65
           S N  Q+ A ++  +RPRTL+E  GQ     N  L+  IE  +     +  ++  G  G 
Sbjct: 131 SSNALQKSAPLAERMRPRTLDEMCGQELVGENGVLRGLIERDR-----VPSMILWGSAGT 185

Query: 66  GKTTLAQVVARELGVNF---RSTSGPVIAKAGDLAALLTN----LEDRDVLFIDEIHRLS 118
           GKTTLA+V+A  +G  F    STS  V A+   L A   N       + ++F DEIHR S
Sbjct: 186 GKTTLARVIASMVGSRFVEINSTSSGV-AECKKLFAEAKNELSLTGRKTIIFCDEIHRFS 244

Query: 119 IIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSR---FTLIAAT 160
              +++    +E  Q+ L+    E PS +     LSR   FTL   T
Sbjct: 245 KSQQDVFLGPVESGQVTLIGATTENPSFKVQNALLSRCRTFTLAKLT 291


>gi|295692642|ref|YP_003601252.1| atpase, aaa family [Lactobacillus crispatus ST1]
 gi|295030748|emb|CBL50227.1| ATPase, AAA family [Lactobacillus crispatus ST1]
          Length = 435

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 58/124 (46%), Gaps = 17/124 (13%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  L+E  GQ       K+     +AR   L  ++  GPPG+GKT++A  +A      
Sbjct: 8   MRPTNLDEVVGQRHLIGPGKIIRRMVEARL--LSSMILYGPPGIGKTSIASAIAGSTKYA 65

Query: 82  FRSTSGPV--------IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           FR  +           +A+ G ++  +       VL +DEIHRL    ++ L P +E  Q
Sbjct: 66  FRKLNAATDGKKQLQQVAEEGKMSGTV-------VLLLDEIHRLDKTKQDFLLPLLESGQ 118

Query: 134 LDLM 137
           + L+
Sbjct: 119 IILI 122


>gi|282891290|ref|ZP_06299792.1| hypothetical protein pah_c050o063 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281498787|gb|EFB41104.1| hypothetical protein pah_c050o063 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 419

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 76/159 (47%), Gaps = 20/159 (12%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP +  E  GQ         FI     + + L  +L+ GP G GKT++A++ A+   + 
Sbjct: 9   LRPSSFTEIVGQPHLLGP-DGFITRTIKQGKPLSIILW-GPAGTGKTSIARLYAQAFNIP 66

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR-----DVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           F+S S  + +   DL  ++   E+R      +LF+DEIHR +   ++   P +E   + +
Sbjct: 67  FQSLSA-IFSGVADLKKVVKEAEERPLFKGTLLFVDEIHRFNKAQQDAFLPFLEKGSI-V 124

Query: 137 MVG---EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           ++G   E PS       LSR       TRV L  NPL D
Sbjct: 125 LIGATVENPSFYLNDALLSR-------TRV-LKLNPLDD 155


>gi|238753492|ref|ZP_04614855.1| Replication-associated recombination protein A [Yersinia ruckeri
           ATCC 29473]
 gi|238708445|gb|EEQ00800.1| Replication-associated recombination protein A [Yersinia ruckeri
           ATCC 29473]
          Length = 447

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 72/149 (48%), Gaps = 11/149 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP TL E+ GQ    +  K    A +A    L  ++  GPPG GKTTLA+++ R    +
Sbjct: 20  MRPLTLAEYIGQQHLLAPGKPLPRAIEA--GQLHSMILWGPPGTGKTTLAEIIGRYGQAD 77

Query: 82  FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
                  TSG   I +A + A    +   R +LF+DE+HR +   ++   P +ED  +  
Sbjct: 78  VERISAVTSGIKEIREAIERARQNRDAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 137

Query: 137 M--VGEGPS--ARSVKINLSRFTLIAATT 161
           +    E PS    S  ++ +R  L+ A T
Sbjct: 138 IGATTENPSFELNSALLSRARVYLLKALT 166


>gi|150866032|ref|XP_001385499.2| DNA-dependent ATPase MGS1 (Maintenance of genome stability protein
           1) DNA-directed DNA polymerase ATPase [Scheffersomyces
           stipitis CBS 6054]
 gi|149387288|gb|ABN67470.2| DNA-dependent ATPase MGS1 (Maintenance of genome stability protein
           1) DNA-directed DNA polymerase ATPase [Scheffersomyces
           stipitis CBS 6054]
          Length = 747

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 16/119 (13%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP++L++F GQ +       L+  I      A+ +   +  G PG+GKT+LA+++A   
Sbjct: 184 LRPKSLDDFFGQEKLLGQDGILRNII-----NADNIPSFILWGVPGVGKTSLARIIAHTT 238

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAME 130
              F   SG   + A  L  +    E+       + +LF+DEIHR +  V+++L P +E
Sbjct: 239 NCKFVELSG-AESNAKRLKEVFLQAENEKHLTGRKTILFLDEIHRFNKAVQDLLLPVIE 296


>gi|227524305|ref|ZP_03954354.1| crossover junction endodeoxyribonuclease [Lactobacillus hilgardii
           ATCC 8290]
 gi|227088536|gb|EEI23848.1| crossover junction endodeoxyribonuclease [Lactobacillus hilgardii
           ATCC 8290]
          Length = 424

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 4/130 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  +EE  GQ +     K+     KA+   L  ++  GPPG GKT++A  +A      
Sbjct: 9   MRPTKIEEIVGQQDLVGPGKIISRMVKAKM--LSSMILYGPPGTGKTSIASAIAGSTKYA 66

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR  +     K    + A    +    VL +DEIHRL    ++ L P +E   + +++G 
Sbjct: 67  FRVLNAATDTKKDLQVVAEEAKMSGTVVLLLDEIHRLDKTKQDFLLPLLEKGAI-ILIGA 125

Query: 141 GPSARSVKIN 150
                 + IN
Sbjct: 126 TTENPYININ 135


>gi|254508488|ref|ZP_05120607.1| ATPase, AAA family [Vibrio parahaemolyticus 16]
 gi|219548600|gb|EED25606.1| ATPase, AAA family [Vibrio parahaemolyticus 16]
          Length = 428

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 75/169 (44%), Gaps = 24/169 (14%)

Query: 22  LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP TL+++ GQ     A   L+  +EA       +  ++  GPPG GKTTLA+V A   
Sbjct: 1   MRPETLDQYIGQQHILGAGKPLRRALEAGH-----IHSMILWGPPGTGKTTLAEVAANYA 55

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDF 132
                  S  V +   ++ A +    +      R +LF+DE+HR +   ++   P +ED 
Sbjct: 56  NAEVERVSA-VTSGVKEIRAAIERARENKLAGRRTILFVDEVHRFNKSQQDAFLPHIEDG 114

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            +  +    E PS       LSR        RV  LT+  Q   G+ ++
Sbjct: 115 TVTFIGATTENPSFELNNALLSR-------ARVYKLTSLSQQDIGLALQ 156


>gi|326480926|gb|EGE04936.1| AAA family ATPase [Trichophyton equinum CBS 127.97]
          Length = 551

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 80/167 (47%), Gaps = 21/167 (12%)

Query: 9   SRNVSQEDADIS-LLRPRTLEEFTGQVEACSN--LKVFIEAAKARAEALDHVLFVGPPGL 65
           S N  Q+ A ++  +RPRTL+E  GQ     N  L+  IE  +     +  ++  G  G 
Sbjct: 132 SSNALQKSAPLAERMRPRTLDEMCGQELVGENGVLRGLIERDR-----VPSMILWGSAGT 186

Query: 66  GKTTLAQVVARELGVNF---RSTSGPVIAKAGDLAALLTN----LEDRDVLFIDEIHRLS 118
           GKTTLA+V+A  +G  F    STS  V A+   L A   N       + ++F DEIHR S
Sbjct: 187 GKTTLARVIASMVGSRFVEINSTSSGV-AECKKLFAEAKNELSLTGRKTIIFCDEIHRFS 245

Query: 119 IIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSR---FTLIAAT 160
              +++    +E  Q+ L+    E PS +     LSR   FTL   T
Sbjct: 246 KSQQDVFLGPVESGQVTLIGATTENPSFKVQNALLSRCRTFTLAKLT 292


>gi|167645615|ref|YP_001683278.1| recombination factor protein RarA [Caulobacter sp. K31]
 gi|167348045|gb|ABZ70780.1| AAA ATPase central domain protein [Caulobacter sp. K31]
          Length = 433

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 56/116 (48%), Gaps = 9/116 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+TL+E  GQ             A AR   L  ++  GPPG GKTT+A+++A+  G  
Sbjct: 22  LRPQTLDEVVGQEHLLGPEGPIGRMAAARR--LASMILWGPPGTGKTTIARLLAKAGGYE 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMED 131
           F+  S  V +   DL         R       +LF+DEIHR +   ++   P +E+
Sbjct: 80  FQQISA-VFSGVADLKKAFEQARMRRQAGQSTLLFVDEIHRFNRAQQDGFLPFVEE 134


>gi|52141108|ref|YP_085721.1| recombination factor protein RarA [Bacillus cereus E33L]
 gi|51974577|gb|AAU16127.1| ATPase, AAA family [Bacillus cereus E33L]
          Length = 428

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 71/263 (26%), Positives = 102/263 (38%), Gaps = 47/263 (17%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  ++E  GQ       K+     +A       ++  GPPG GKT++A  +A   G  
Sbjct: 9   MRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAIAGSTGTP 66

Query: 82  FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
           FR  +  V     D+  ++    +    VL +DE+HRL    ++ L P +E   L     
Sbjct: 67  FRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLL----- 120

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEI----ED-----LK 189
                          TLI ATT     +NP       I  R   +E+    ED     LK
Sbjct: 121 ---------------TLIGATT-----SNPFHAINSAIRSRCQIFELHALTEDDLLIGLK 160

Query: 190 TIVQRGAKLTG---LAVTDEAACEIAMRSRGTPRIAGRLLRR--VRDFAEVAHAKTITRE 244
             ++   K  G   + VT EA    A  S G  R A   L    +  F     A  IT E
Sbjct: 161 RALEDKEKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLE 220

Query: 245 IADAALLRLAI--DKMGFDQLDL 265
           IA+  L + +   DK G    D+
Sbjct: 221 IAEECLQKKSFVHDKGGDAHYDV 243


>gi|254252991|ref|ZP_04946309.1| hypothetical protein BDAG_02239 [Burkholderia dolosa AUO158]
 gi|124895600|gb|EAY69480.1| hypothetical protein BDAG_02239 [Burkholderia dolosa AUO158]
          Length = 436

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 110/259 (42%), Gaps = 42/259 (16%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL E  GQ         L++  E+ K  +     ++  GPPG+GKTTL+++ A   
Sbjct: 17  LRPKTLAEVIGQTHLLGEGKPLRLAFESGKPHS-----MILWGPPGVGKTTLSRLTALAF 71

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V+    D+   +   +D         +LF+DEIHR +   ++ L P +E 
Sbjct: 72  DCEFIALSA-VLGGVKDIRDAMEQAKDTLNRTGRHTILFVDEIHRFNKGQQDALLPFVES 130

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
             L   +G      S ++N    + + +  +V +L +   D              +++ +
Sbjct: 131 -GLVTFIGATTENPSFEVN----SALLSRAQVYVLKSLTDD--------------EMRQL 171

Query: 192 VQRGAK--LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
           ++R     L GLA  D A   +   + G  R    LL + +  A  A   TI  E    A
Sbjct: 172 LKRAQDIALDGLAFDDNAVDTLIGYADGDARRFLNLLEQAQTAAASAGVATIDAEFVSNA 231

Query: 250 LLRLA--IDKMG---FDQL 263
           +   A   DK G   +DQ+
Sbjct: 232 MTLNARRFDKGGDNFYDQI 250


>gi|284032278|ref|YP_003382209.1| AAA ATPase central domain-containing protein [Kribbella flavida DSM
           17836]
 gi|283811571|gb|ADB33410.1| AAA ATPase central domain protein [Kribbella flavida DSM 17836]
          Length = 488

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 62/129 (48%), Gaps = 18/129 (13%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPR+L+E  GQ   +   S L+  +E  +  +     +L  GPPG GKTT+A VV+ + 
Sbjct: 35  MRPRSLDELVGQQHLLAPGSPLRRLVEGDQPMS-----LLLWGPPGTGKTTIAAVVSHQT 89

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED---------RDVLFIDEIHRLSIIVEEILYPAM 129
              F   S  V A   D+  ++                VLFIDE+HR +   ++ L P +
Sbjct: 90  NRKFVELSA-VTAGVKDVRQVIDAARRELSRPGGSVETVLFIDEVHRFTKAQQDALLPGV 148

Query: 130 EDFQLDLMV 138
           E+  + L+ 
Sbjct: 149 ENRWVTLVA 157


>gi|227510161|ref|ZP_03940210.1| crossover junction endodeoxyribonuclease [Lactobacillus brevis
           subsp. gravesensis ATCC 27305]
 gi|227190366|gb|EEI70433.1| crossover junction endodeoxyribonuclease [Lactobacillus brevis
           subsp. gravesensis ATCC 27305]
          Length = 424

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 4/130 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  +EE  GQ +     K+     KA+   L  ++  GPPG GKT++A  +A      
Sbjct: 9   MRPTKIEEIVGQQDLVGPGKIISRMVKAKM--LSSMILYGPPGTGKTSIASAIAGSTKYA 66

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR  +     K    + A    +    VL +DEIHRL    ++ L P +E   + +++G 
Sbjct: 67  FRVLNAATDTKKDLQVVAEEAKMSGTVVLLLDEIHRLDKTKQDFLLPLLEKGAI-ILIGA 125

Query: 141 GPSARSVKIN 150
                 + IN
Sbjct: 126 TTENPYININ 135


>gi|308189678|ref|YP_003922609.1| ATPase [Mycoplasma fermentans JER]
 gi|319776862|ref|YP_004136513.1| atpase, aaa family [Mycoplasma fermentans M64]
 gi|307624420|gb|ADN68725.1| ATPase [Mycoplasma fermentans JER]
 gi|318037937|gb|ADV34136.1| ATPase, AAA family [Mycoplasma fermentans M64]
          Length = 404

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 56/109 (51%), Gaps = 9/109 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRTL++  GQ    S LK   E  K +A      +F G  G GK++ A  +A +L + 
Sbjct: 8   IRPRTLDDIVGQKHVVSLLK---EIVKNKAST--SFIFFGESGTGKSSAAVALANDLKLK 62

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           +    G   A   +   L+  ++  D++ IDEIHRL+   ++IL   +E
Sbjct: 63  Y----GYFNATINNKDELVNTIQTNDIIIIDEIHRLNKDKQDILLSYLE 107


>gi|251781644|ref|YP_002995946.1| recombination factor protein RarA [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
 gi|242390273|dbj|BAH80732.1| recombination factor protein [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|323126434|gb|ADX23731.1| recombination factor protein RarA [Streptococcus dysgalactiae
           subsp. equisimilis ATCC 12394]
          Length = 429

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+T+ E  GQ       K+     +A    L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPKTISEVIGQEHLVGEGKIIRRMVEA--NMLSSMILYGPPGIGKTSIASAIAGTTKYA 66

Query: 82  FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +  V +K       + A     L    VL +DEIHRL    ++ L P +E+  + +
Sbjct: 67  FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLENGTI-I 121

Query: 137 MVG 139
           M+G
Sbjct: 122 MIG 124


>gi|38233937|ref|NP_939704.1| recombination factor protein RarA [Corynebacterium diphtheriae NCTC
           13129]
 gi|38200198|emb|CAE49879.1| Conserved hypothetical protein (putative ATP/GTP binding protein)
           [Corynebacterium diphtheriae]
          Length = 456

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 85/186 (45%), Gaps = 21/186 (11%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP++L+E  GQ     + K          +A   V+  GPPG GKTT+A +++   G  
Sbjct: 40  MRPQSLDEVVGQRHLLDSGKPLQRLIAGSGDA--SVILYGPPGTGKTTIASLISAGTGHE 97

Query: 82  FRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           F   S        I +  D A        R VLFIDE+HR S   ++ L  A+E+  + L
Sbjct: 98  FVGLSALNSGVKEIREVIDQARRNLIHGKRTVLFIDEVHRFSKTQQDALLAAVENRTVLL 157

Query: 137 MVG--EGPS--------ARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           +    E PS        +RS+ + L   T     T   +L + LQD+ G+  R+   + E
Sbjct: 158 VAATTENPSFSVVAPLLSRSLILQLKPLTHDDIKT---VLLHALQDKRGLDNRITISD-E 213

Query: 187 DLKTIV 192
            L+ +V
Sbjct: 214 ALEQLV 219


>gi|55821924|ref|YP_140366.1| recombination factor protein RarA [Streptococcus thermophilus LMG
           18311]
 gi|55823843|ref|YP_142284.1| recombination factor protein RarA [Streptococcus thermophilus
           CNRZ1066]
 gi|116628622|ref|YP_821241.1| recombination factor protein RarA [Streptococcus thermophilus
           LMD-9]
 gi|55737909|gb|AAV61551.1| chromosome segregation helicase [Streptococcus thermophilus LMG
           18311]
 gi|55739828|gb|AAV63469.1| chromosome segregation helicase [Streptococcus thermophilus
           CNRZ1066]
 gi|116101899|gb|ABJ67045.1| Recombination protein MgsA [Streptococcus thermophilus LMD-9]
 gi|312279275|gb|ADQ63932.1| ATPase AAA family recombination factor RarA [Streptococcus
           thermophilus ND03]
          Length = 422

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR++ E  GQ       K+     +A    L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPRSISEVIGQKHLVGEGKIIRRMVEA--NMLSSMILYGPPGIGKTSIASAIAGTTKFA 66

Query: 82  FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +  V +K       + A     L    VL +DEIHRL    ++ L P +E+  + +
Sbjct: 67  FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKAKQDFLLPLLENGNI-I 121

Query: 137 MVG 139
           M+G
Sbjct: 122 MIG 124


>gi|326473927|gb|EGD97936.1| AAA family ATPase [Trichophyton tonsurans CBS 112818]
          Length = 551

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 80/167 (47%), Gaps = 21/167 (12%)

Query: 9   SRNVSQEDADIS-LLRPRTLEEFTGQVEACSN--LKVFIEAAKARAEALDHVLFVGPPGL 65
           S N  Q+ A ++  +RPRTL+E  GQ     N  L+  IE  +     +  ++  G  G 
Sbjct: 132 SSNALQKSAPLAERMRPRTLDEMCGQELVGENGVLRGLIERDR-----VPSMILWGSAGT 186

Query: 66  GKTTLAQVVARELGVNF---RSTSGPVIAKAGDLAALLTN----LEDRDVLFIDEIHRLS 118
           GKTTLA+V+A  +G  F    STS  V A+   L A   N       + ++F DEIHR S
Sbjct: 187 GKTTLARVIASMVGSRFVEINSTSSGV-AECKKLFAEAKNELSLTGRKTIIFCDEIHRFS 245

Query: 119 IIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSR---FTLIAAT 160
              +++    +E  Q+ L+    E PS +     LSR   FTL   T
Sbjct: 246 KSQQDVFLGPVESGQVTLIGATTENPSFKVQNALLSRCRTFTLAKLT 292


>gi|238920372|ref|YP_002933887.1| recombination factor protein RarA [Edwardsiella ictaluri 93-146]
 gi|238869941|gb|ACR69652.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 447

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 65/129 (50%), Gaps = 9/129 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR----E 77
           +RP TLE++ GQ    +  K    A  A    L  ++  GPPG GKTTLA+++AR    E
Sbjct: 20  MRPATLEQYIGQRHLLAAGKPLPRAILA--GHLHSMILWGPPGTGKTTLAELIARYGHAE 77

Query: 78  LGVNFRSTSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           +      TSG   I +A + A    +   R +LF+DE+HR +   ++   P +ED  +  
Sbjct: 78  VERISAVTSGIKEIREAIERARHNRDAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 137

Query: 137 M--VGEGPS 143
           +    E PS
Sbjct: 138 IGATTENPS 146


>gi|145258000|ref|XP_001401914.1| AAA family ATPase [Aspergillus niger CBS 513.88]
 gi|134074518|emb|CAK38812.1| unnamed protein product [Aspergillus niger]
          Length = 531

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 84/192 (43%), Gaps = 42/192 (21%)

Query: 22  LRPRTLEEFTGQVEACSN--LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +RPRTL++  GQ     N  L+  IE  +     +  ++  G PG GKTT+A+V+A  +G
Sbjct: 126 MRPRTLDDVCGQELVGPNGVLRGLIEQDR-----VPSMILWGGPGTGKTTIARVIASMVG 180

Query: 80  VNF----RSTSGPVIAKA--GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             F     ++SG    K    D  + L     + ++F DEIHR S   +++    +E  Q
Sbjct: 181 SRFVEINSTSSGVAECKKIFSDAKSELGLTGRKTIIFCDEIHRFSKSQQDVFLGPVESGQ 240

Query: 134 LDLM--VGEGPSARSVKINLSR---FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + L+    E PS +     LSR   FTL   T                         ED+
Sbjct: 241 VTLIGATTENPSFKVQNALLSRCRTFTLSKLTD------------------------EDI 276

Query: 189 KTIVQRGAKLTG 200
           K+I+ R  +L G
Sbjct: 277 KSILHRALRLEG 288


>gi|24380393|ref|NP_722348.1| recombination factor protein RarA [Streptococcus mutans UA159]
 gi|24378415|gb|AAN59654.1|AE015027_12 putative ATPase [Streptococcus mutans UA159]
          Length = 427

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 59/126 (46%), Gaps = 18/126 (14%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR + E  GQ       K+   +    A  L  ++  GPPG+GKT++A  +A      
Sbjct: 15  MRPRDISEVIGQKHLVGQGKII--SRMVTANRLSSMILYGPPGIGKTSIASAIAGTTKFA 72

Query: 82  FRSTSGPV--------IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           FR+ +           IA+    +  L       VL +DEIHRL    ++ L P +E+ Q
Sbjct: 73  FRTFNATTDTKKRLQEIAEEAKFSGGL-------VLLLDEIHRLDKTKQDFLLPLLENGQ 125

Query: 134 LDLMVG 139
           + +M+G
Sbjct: 126 I-IMIG 130


>gi|120610553|ref|YP_970231.1| recombination factor protein RarA [Acidovorax citrulli AAC00-1]
 gi|120589017|gb|ABM32457.1| Recombination protein MgsA [Acidovorax citrulli AAC00-1]
          Length = 462

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 15/118 (12%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP +L+E  GQ         L++  ++ K  +     ++F GPPG+GKTTLA++ A   
Sbjct: 45  LRPASLDEVIGQSHLLGEGKPLRLAFQSGKPHS-----MIFWGPPGVGKTTLARLTATAF 99

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130
              F + S  V +   D+ A +   +         +LF+DEIHR +   ++ L P  E
Sbjct: 100 QCEFIALSA-VFSGVKDIRAAMEQAQQNLAMGKHTILFVDEIHRFNKSQQDALLPYAE 156


>gi|302658374|ref|XP_003020891.1| hypothetical protein TRV_04967 [Trichophyton verrucosum HKI 0517]
 gi|291184761|gb|EFE40273.1| hypothetical protein TRV_04967 [Trichophyton verrucosum HKI 0517]
          Length = 551

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 80/167 (47%), Gaps = 21/167 (12%)

Query: 9   SRNVSQEDADIS-LLRPRTLEEFTGQVEACSN--LKVFIEAAKARAEALDHVLFVGPPGL 65
           S N  Q+ A ++  +RPRTL+E  GQ     N  L+  IE  +     +  ++  G  G 
Sbjct: 132 SSNALQKSAPLAERMRPRTLDEMCGQELVGENGVLRGLIERDR-----VPSMILWGSAGT 186

Query: 66  GKTTLAQVVARELGVNF---RSTSGPVIAKAGDLAALLTN----LEDRDVLFIDEIHRLS 118
           GKTTLA+V+A  +G  F    STS  V A+   L A   N       + ++F DEIHR S
Sbjct: 187 GKTTLARVIASMVGSRFVEINSTSSGV-AECKKLFAEAKNELSLTGRKTIIFCDEIHRFS 245

Query: 119 IIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSR---FTLIAAT 160
              +++    +E  Q+ L+    E PS +     LSR   FTL   T
Sbjct: 246 KSQQDVFLGPVESGQVTLIGATTENPSFKVQNALLSRCRTFTLAKLT 292


>gi|254584580|ref|XP_002497858.1| ZYRO0F15136p [Zygosaccharomyces rouxii]
 gi|238940751|emb|CAR28925.1| ZYRO0F15136p [Zygosaccharomyces rouxii]
          Length = 566

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 70/140 (50%), Gaps = 23/140 (16%)

Query: 22  LRPRTLEEFTGQVEACSN----LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +RPR + E+ GQ    S     L  +I     R   +  ++  GPPG+GKTTLA+++ + 
Sbjct: 133 VRPREMTEYVGQQHILSQEGGTLSKYI-----RQGIIPSMVLWGPPGVGKTTLARLLTKT 187

Query: 78  LGVN--FRST---SGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEIL 125
             V+  F+ T   +    A   +L ++    ++       R VLFIDEIHR +   +++L
Sbjct: 188 ASVHGKFQYTMIETSATKANTQELRSIFDKSKNDFHLTKRRTVLFIDEIHRFNKGQQDLL 247

Query: 126 YPAMEDFQLDLM--VGEGPS 143
            P +E+  + L+    E PS
Sbjct: 248 LPHVENGDIVLIGATTENPS 267


>gi|187250562|ref|YP_001875044.1| ATPase family protein [Elusimicrobium minutum Pei191]
 gi|186970722|gb|ACC97707.1| ATPase family protein [Elusimicrobium minutum Pei191]
          Length = 416

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 68/269 (25%), Positives = 116/269 (43%), Gaps = 59/269 (21%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE- 77
           + P+ L++F GQ         L+  IE+     + +   +F GPPG+GKT LA+ +A + 
Sbjct: 14  MAPKNLDDFAGQKHVIGPGRMLRRMIES-----DTIKSAVFFGPPGVGKTALARFIASKT 68

Query: 78  --LGVNFRSTSGPVIAKAGDLAALL---------TNLEDRDVLFIDEIHRLSIIVEEILY 126
             + V   + +  V    GD+  ++         T LE R ++ +DEIH  +   +++L 
Sbjct: 69  EAVTVELNAAAAGV----GDIKKVIEEAKERRNDTFLEKRTLVVLDEIHHFNKTQQDVLL 124

Query: 127 PAME--DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           P++E  D  L  +  E P        LSRF++            PL             +
Sbjct: 125 PSVERGDIILIGLTTENPYFYINNALLSRFSVFE--------FKPL-------------D 163

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK----- 239
            +DL+ I++R  K+    +  +A      ++ G  R   RLL  V D A +  AK     
Sbjct: 164 AKDLEQILKRVLKIKEAKIQKDAKDFFITQANGDAR---RLLNAV-DLAILTTAKDSDGI 219

Query: 240 -TITREIADAALLR--LAIDKMGFDQLDL 265
             IT ++A   + +  L  DK G +  D+
Sbjct: 220 VNITMDVAKECMQKRHLNYDKKGDEHYDV 248


>gi|290581325|ref|YP_003485717.1| putative ATPase [Streptococcus mutans NN2025]
 gi|254998224|dbj|BAH88825.1| putative ATPase [Streptococcus mutans NN2025]
          Length = 421

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 59/126 (46%), Gaps = 18/126 (14%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR + E  GQ       K+   +    A  L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPRDISEVIGQKHLVGQGKII--SRMVTANRLSSMILYGPPGIGKTSIASAIAGTTKFA 66

Query: 82  FRSTSGPV--------IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           FR+ +           IA+    +  L       VL +DEIHRL    ++ L P +E+ Q
Sbjct: 67  FRTFNATTDTKKRLQEIAEEAKFSGGL-------VLLLDEIHRLDKTKQDFLLPLLENGQ 119

Query: 134 LDLMVG 139
           + +M+G
Sbjct: 120 I-IMIG 124


>gi|167385811|ref|XP_001737497.1| ATPase WRNIP1 [Entamoeba dispar SAW760]
 gi|165899652|gb|EDR26196.1| ATPase WRNIP1, putative [Entamoeba dispar SAW760]
          Length = 482

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 75/162 (46%), Gaps = 16/162 (9%)

Query: 10  RNVSQEDADISLL------RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           R  S  D DIS +      RP+ LE+  GQ  A      F   +    ++L   +  GPP
Sbjct: 17  RRDSNSDKDISYIPLAERQRPKRLEDIIGQESAIGIGTPF--NSMILNDSLQSTILFGPP 74

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAG-----DLAALLTNLEDRD-VLFIDEIHRL 117
           G GKTT+A+++       F   S    +K       + A      E +D +LF+DEIH L
Sbjct: 75  GSGKTTIARIIKNMSNSFFVQISSVTTSKEELKNVIEQAKERKKREKKDTILFVDEIHTL 134

Query: 118 SIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLI 157
           + + ++I  PA+E+  + L+    E PS +     +SR  L+
Sbjct: 135 NKLQQDIFLPAIENGSIILIGATTENPSFQLNNALMSRCNLV 176


>gi|157693158|ref|YP_001487620.1| recombination factor protein RarA [Bacillus pumilus SAFR-032]
 gi|157681916|gb|ABV63060.1| crossover junction endodeoxyribonuclease ATPase [Bacillus pumilus
           SAFR-032]
          Length = 421

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 58/112 (51%), Gaps = 5/112 (4%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  +E+  GQ       ++     +A+   L  ++  GPPG+GKT++A  +A    + 
Sbjct: 8   MRPSHIEDIIGQEHLVGEGQIIRRMVEAKH--LSSMILYGPPGIGKTSIATAIAGSTSIA 65

Query: 82  FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
           FR+ +  VI    D+ A+     +  + +L +DE+HRL    ++ L P +E+
Sbjct: 66  FRTLNA-VIHNKKDMEAVAAEAKMSGQVILILDEVHRLDKGKQDFLLPYLEN 116


>gi|150015980|ref|YP_001308234.1| recombination factor protein RarA [Clostridium beijerinckii NCIMB
           8052]
 gi|149902445|gb|ABR33278.1| AAA ATPase, central domain protein [Clostridium beijerinckii NCIMB
           8052]
          Length = 414

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 98/248 (39%), Gaps = 53/248 (21%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           L+RP  LE+F GQ       K        +   + + +F GPPG GKTTLA ++A  +  
Sbjct: 7   LMRPNKLEDFVGQQHILGQGKPLYNLIAGKN--ICNCIFYGPPGTGKTTLANIMANYVDK 64

Query: 81  NFRSTSGPVIAKAGDLAALLTNLE-----DRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
            F   +  V A   D+  +  N++     +  VL+IDE+   +   ++ L   +ED    
Sbjct: 65  KFYKLNATV-ASVKDIQDITNNIDSLLNYNGVVLYIDELQHFNKKQQQALLEFIED---- 119

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQR 194
                            R TLIA+TT      NP       I  R N +  + L T    
Sbjct: 120 ----------------GRITLIASTTE-----NPYFVIHKAIISRCNIFSFKPLTT---- 154

Query: 195 GAKLTGLA--------------VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           G  + GL                +DEA   I   S+G  R A  +L    + ++V   + 
Sbjct: 155 GDIIVGLKRSIQKLIDEGIEIEYSDEALEYIGEISQGDYRKAYNILELAVN-SQVKQVRV 213

Query: 241 ITREIADA 248
           I+ E  ++
Sbjct: 214 ISSEYIES 221


>gi|332522252|ref|ZP_08398504.1| recombination factor protein RarA [Streptococcus porcinus str.
           Jelinkova 176]
 gi|332313516|gb|EGJ26501.1| recombination factor protein RarA [Streptococcus porcinus str.
           Jelinkova 176]
          Length = 420

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 58/123 (47%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+T+ E  GQ       K+     +A    L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPKTISEVIGQEHLVGEGKIIRRMVEANM--LSSMILYGPPGIGKTSIASAIAGTTKYA 66

Query: 82  FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +     K       D A     L    VL +DEIHRL    ++ L P +E+  + +
Sbjct: 67  FRTFNATTDTKKRLQEIADEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLENGNI-I 121

Query: 137 MVG 139
           M+G
Sbjct: 122 MIG 124


>gi|270261177|ref|ZP_06189450.1| hypothetical protein SOD_a04020 [Serratia odorifera 4Rx13]
 gi|270044661|gb|EFA17752.1| hypothetical protein SOD_a04020 [Serratia odorifera 4Rx13]
          Length = 444

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 74/152 (48%), Gaps = 17/152 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP TL ++ GQ   + A   L   IEA +     L  ++  GPPG GKTTLA+++ R  
Sbjct: 17  MRPTTLAQYIGQQHLLAAGKPLPRAIEAGQ-----LHSMILWGPPGTGKTTLAELIGRYG 71

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             +       TSG   I +A + A    +   R +LF+DE+HR +   ++   P +ED  
Sbjct: 72  QADVERISAVTSGIKEIREAIERARQNRDAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 131

Query: 134 LDLM--VGEGPS--ARSVKINLSRFTLIAATT 161
           +  +    E PS    S  ++ +R  L+ A T
Sbjct: 132 ITFIGATTENPSFELNSALLSRARVYLLKALT 163


>gi|297529269|ref|YP_003670544.1| ATPase AAA [Geobacillus sp. C56-T3]
 gi|297252521|gb|ADI25967.1| AAA ATPase central domain protein [Geobacillus sp. C56-T3]
          Length = 431

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 58/115 (50%), Gaps = 13/115 (11%)

Query: 22  LRPRTLEEFTGQVEACS-NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG- 79
           +RPRT++E  GQ      +  ++    K    +L   L  G PG GKT+LA  +AR  G 
Sbjct: 12  MRPRTIDEIVGQQHIIGPSTPLYKMVKKGHVPSL---LLYGEPGTGKTSLAYAIARTAGR 68

Query: 80  ----VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
               +N  +     I +A + A    N+    +LFIDEIHRL+   +++L P +E
Sbjct: 69  EWVAINATTAGKKEIEEAVEAARWSGNV----LLFIDEIHRLNKAQQDVLLPHLE 119


>gi|256419214|ref|YP_003119867.1| ATPase AAA [Chitinophaga pinensis DSM 2588]
 gi|256034122|gb|ACU57666.1| AAA ATPase central domain protein [Chitinophaga pinensis DSM 2588]
          Length = 419

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 68/136 (50%), Gaps = 7/136 (5%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP TL+E  GQ E  +     +  A  +      +L+ GPPG+GKTT+A ++A  L V 
Sbjct: 8   IRPETLDELVGQ-EHLTGKDSILRTALQQGRIPSMILW-GPPGVGKTTIANIIAHTLDVP 65

Query: 82  FRSTSGPVIAKAGDLAAL--LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137
           F + S  + A   ++  +  +   +   VLFIDEIHR +   ++ L  A+E   + L+  
Sbjct: 66  FYTLSA-IAAGVKEVREVIEIARKQGYAVLFIDEIHRFNKSQQDALLGAVEKGIITLIGA 124

Query: 138 VGEGPSARSVKINLSR 153
             E PS       LSR
Sbjct: 125 TTENPSFEVNSALLSR 140


>gi|157369928|ref|YP_001477917.1| recombination factor protein RarA [Serratia proteamaculans 568]
 gi|157321692|gb|ABV40789.1| AAA ATPase central domain protein [Serratia proteamaculans 568]
          Length = 447

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 74/152 (48%), Gaps = 17/152 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP TL ++ GQ   + A   L   IEA +     L  ++  GPPG GKTTLA+++ R  
Sbjct: 20  MRPTTLAQYIGQQHLLAAGKPLPRAIEAGQ-----LHSMILWGPPGTGKTTLAELIGRYG 74

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             +       TSG   I +A + A    +   R +LF+DE+HR +   ++   P +ED  
Sbjct: 75  QADVERISAVTSGIKEIREAIERARQNRDAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134

Query: 134 LDLM--VGEGPS--ARSVKINLSRFTLIAATT 161
           +  +    E PS    S  ++ +R  L+ A T
Sbjct: 135 ITFIGATTENPSFELNSALLSRARVYLLKALT 166


>gi|317491440|ref|ZP_07949876.1| ATPase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920987|gb|EFV42310.1| ATPase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 447

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 73/149 (48%), Gaps = 11/149 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP TL+++ GQ    +  K    A +A    L  ++  GPPG GKTTLA+++ R    +
Sbjct: 20  MRPETLKQYIGQRHLLAVGKPLPRAIEA--GHLHSMILWGPPGTGKTTLAELIGRYGNAD 77

Query: 82  FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
                  TSG   I +A + A    +   R +LF+DE+HR +   ++   P +ED  +  
Sbjct: 78  VERISAVTSGIKEIREAIERARHNRDAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 137

Query: 137 M--VGEGPS--ARSVKINLSRFTLIAATT 161
           +    E PS    S  ++ +R  L+ A T
Sbjct: 138 IGATTENPSFELNSALLSRARVYLLKALT 166


>gi|120554468|ref|YP_958819.1| recombination factor protein RarA [Marinobacter aquaeolei VT8]
 gi|120324317|gb|ABM18632.1| Recombination protein MgsA [Marinobacter aquaeolei VT8]
          Length = 444

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 75/154 (48%), Gaps = 15/154 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP +LE + GQ       K    A +     L  ++  GPPG+GKTT A+++A    ++
Sbjct: 19  MRPTSLEGYVGQAHLVGPGKPLRRAVEQ--GQLHSMILWGPPGVGKTTFARLLANVGDLS 76

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F + S  V++   ++  ++    +R        +LF+DE+HR +   ++   P +ED   
Sbjct: 77  FETISA-VLSGVKEIREVVERARNRKQSQGRDTLLFVDEVHRFNKSQQDAFLPHIEDGTF 135

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
            + VG      S ++N    + + + TRV +L N
Sbjct: 136 -IFVGATTENPSFELN----SALLSRTRVYVLKN 164


>gi|124009494|ref|ZP_01694169.1| ATPase, AAA family [Microscilla marina ATCC 23134]
 gi|123984840|gb|EAY24808.1| ATPase, AAA family [Microscilla marina ATCC 23134]
          Length = 429

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 85/177 (48%), Gaps = 13/177 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+TL ++ GQ        V   +   +++ +  ++  GPPG+GKTTLA+++   +   
Sbjct: 17  LRPQTLAQYQGQAHLVGKNGVI--SKLLQSDKVPSMILWGPPGVGKTTLARLIGNHVKTP 74

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137
           F + S  + +   ++  ++   + R   +LFIDEIHR +   ++ L  A+E   + L+  
Sbjct: 75  FFTLSA-INSGVKEVRQVIEKAKTRAGSILFIDEIHRFNKAQQDALLGAVETGLITLIGA 133

Query: 138 VGEGPSARSVKINLSRFTL-----IAATTRVGLLTNPL-QDRFGIPIRLNFYEIEDL 188
             E PS   +    SR  +     ++  T V +L N   QD +   + +   E E L
Sbjct: 134 TTENPSFEVISALQSRCQIYILQPLSPETLVEMLENAQKQDEWLKKLNIKLKETEAL 190


>gi|328794225|ref|XP_001122490.2| PREDICTED: uncharacterized AAA domain-containing protein YrvN-like,
           partial [Apis mellifera]
          Length = 318

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 59/117 (50%), Gaps = 14/117 (11%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+T+ E  GQ    S  ++     KA+   L  ++  GPPG GKT++A+ ++   G++
Sbjct: 9   MRPKTVNEVVGQQHLLSEGRIINRMIKAKR--LTSMILYGPPGTGKTSIAKALSGTTGLS 66

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLSIIVEEILYPAMED 131
           F   +        D    LT L  +        ++F+DEIHRL+   ++ L P +ED
Sbjct: 67  FEYFNA-----VKDDKKKLTILSQQARVTQSSIIIFLDEIHRLNKDKQDFLLPFIED 118


>gi|239994321|ref|ZP_04714845.1| recombination factor protein RarA [Alteromonas macleodii ATCC
           27126]
          Length = 435

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 69/143 (48%), Gaps = 17/143 (11%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP T+E+++GQ         L+  +EA    +     ++  GPPG GKTTLA+++A+  
Sbjct: 15  MRPVTIEQYSGQEHLLGEGKPLRKMLEAGHCHS-----MILWGPPGTGKTTLAELIAQYT 69

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDF 132
             +    S  V +   D+ A +   E+      R +LF+DE+HR +   ++   P +E  
Sbjct: 70  KASVLRISA-VTSGVKDIRAAMDTAEENARYNQRTLLFVDEVHRFNKSQQDAFLPFVESG 128

Query: 133 QLDLM--VGEGPSARSVKINLSR 153
            +  +    E PS    K  LSR
Sbjct: 129 VVTFIGATTENPSFELNKALLSR 151


>gi|260776357|ref|ZP_05885252.1| ATPase AAA family [Vibrio coralliilyticus ATCC BAA-450]
 gi|260607580|gb|EEX33845.1| ATPase AAA family [Vibrio coralliilyticus ATCC BAA-450]
          Length = 428

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 66/148 (44%), Gaps = 11/148 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP TL+++ GQ       K    A +A    +  ++  GPPG GKTTLA+V A      
Sbjct: 1   MRPETLDQYIGQQHILGLGKPLRRALEAGH--IHSMILWGPPGTGKTTLAEVAANYANAE 58

Query: 82  FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
               S  V +   D+ A +    +      R +LF+DE+HR +   ++   P +ED  + 
Sbjct: 59  VERVSA-VTSGVKDIRAAIDKARENKLTGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVT 117

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATT 161
            +    E PS       LSR  +   T+
Sbjct: 118 FIGATTENPSFELNNALLSRARVYKLTS 145


>gi|212638447|ref|YP_002314967.1| Lon-like ATP-dependent protease [Anoxybacillus flavithermus WK1]
 gi|212559927|gb|ACJ32982.1| Lon-like ATP-dependent protease [Anoxybacillus flavithermus WK1]
          Length = 573

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 100/256 (39%), Gaps = 55/256 (21%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           R++S  +     +RP+T ++  GQ +    LK  +     +     HV+  GPPG+GKT 
Sbjct: 72  RSISLTEPLAEKVRPKTFDDIVGQEDGIKALKAALCGPNPQ-----HVIIYGPPGVGKTA 126

Query: 70  LAQVVARELGVN----FR--------------------------STSGPVIAKAGDLA-- 97
            A++V  E   N    FR                          S   P+   AG +   
Sbjct: 127 AARLVLEEAKKNPLSPFRKDAVFVELDATTARFDERGIADPLIGSVHDPIYQGAGAMGQA 186

Query: 98  -------ALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED----FQLDLMVGEGPSARS 146
                    +TN     VLFIDEI  L  I    L   +ED    F+      E P+  +
Sbjct: 187 GIPQPKQGAVTNAHG-GVLFIDEIGELHPIQMNKLLKVLEDRKVFFESAYYSEENPNIPN 245

Query: 147 VKINL------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
              ++      + F L+ ATTR      P      + +     E E++  IV++ A+   
Sbjct: 246 HIHDIFQNGLPADFRLVGATTRTPNEIPPAIRSRCMEVFFRELEQEEIAQIVKKAAEKVN 305

Query: 201 LAVTDEAACEIAMRSR 216
           L + ++A  E+AM +R
Sbjct: 306 LPIEEQAVHELAMYAR 321


>gi|327311922|ref|YP_004338819.1| replication factor C small subunit [Thermoproteus uzoniensis
          768-20]
 gi|326948401|gb|AEA13507.1| replication factor C small subunit [Thermoproteus uzoniensis
          768-20]
          Length = 322

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/56 (48%), Positives = 35/56 (62%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RPR+ EE     E  + LK F++A       + H+LF GPPG GKTT+A V+AREL
Sbjct: 11 RPRSFEEVVDLEEVKARLKEFVKAGN-----MPHLLFYGPPGTGKTTMALVLAREL 61


>gi|222152405|ref|YP_002561580.1| recombination factor protein RarA [Streptococcus uberis 0140J]
 gi|222113216|emb|CAR40703.1| putative ATPase [Streptococcus uberis 0140J]
          Length = 422

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 58/123 (47%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRT+ E  GQ       K+      A    L  ++  GPPG+GKT++A  VA      
Sbjct: 9   MRPRTISEVIGQEHLVGEGKIIRRMVDA--NMLSSMILYGPPGIGKTSIASAVAGTTQYA 66

Query: 82  FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +    +K       + A     L    VL +DEIHRL    ++ L P +E+  + +
Sbjct: 67  FRTFNATTDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLENGNI-I 121

Query: 137 MVG 139
           M+G
Sbjct: 122 MIG 124


>gi|163915553|gb|AAI57421.1| Unknown (protein for MGC:179840) [Xenopus laevis]
          Length = 339

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 69/155 (44%), Gaps = 29/155 (18%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKAR----AEALDHVLFVGPPGLGKTTLAQVVARE 77
           +RP TL  + GQ       KV  E    R    A  +  ++  GPPG GKTTLA ++A+ 
Sbjct: 154 MRPTTLNNYMGQN------KVLGENTMLRNLLQANDIPSIILWGPPGCGKTTLAHIIAKN 207

Query: 78  LG------VNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEI 124
                   V   +TS    A   D+   +   ++       + +LF+DEIHR + + ++ 
Sbjct: 208 AQKSSSRFVTLSATS----ASTSDVREFIKQAQNEQRLFKRKTILFVDEIHRFNKMQQDT 263

Query: 125 LYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLI 157
             P +E   + L+    E PS +     LSR  +I
Sbjct: 264 FLPHVECGTITLIGATTENPSFQVNTALLSRCRVI 298


>gi|297565423|ref|YP_003684395.1| AAA ATPase central domain-containing protein [Meiothermus silvanus
           DSM 9946]
 gi|296849872|gb|ADH62887.1| AAA ATPase central domain protein [Meiothermus silvanus DSM 9946]
          Length = 425

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 65/136 (47%), Gaps = 27/136 (19%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TLEE  GQ         L+  +E  +     L  ++  GPPG GKTTLA+++A  +
Sbjct: 14  LRPKTLEEVVGQDHLTGPGKPLRRMLEVGR-----LQSLILWGPPGSGKTTLARLLAEGV 68

Query: 79  GVNFRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           G    + S            +A+A ++  L        VLF+DEIHR +   ++ L P +
Sbjct: 69  GQEMLALSAVNAGVREIKEAVARAREVGGL--------VLFLDEIHRFNKSQQDALLPHV 120

Query: 130 EDFQLDLM--VGEGPS 143
           E   L L+    E PS
Sbjct: 121 ESGLLTLIGATTENPS 136


>gi|126458633|ref|YP_001054911.1| replication factor C small subunit [Pyrobaculum calidifontis JCM
          11548]
 gi|158513488|sp|A3MS28|RFCS_PYRCJ RecName: Full=Replication factor C small subunit; Short=RFC small
          subunit; AltName: Full=Clamp loader small subunit
 gi|126248354|gb|ABO07445.1| Replication factor C [Pyrobaculum calidifontis JCM 11548]
          Length = 326

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 39/65 (60%), Gaps = 6/65 (9%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81
          RPR+ EE     E  + L+ F++A       L H+LF GPPG GKTT+A V+AREL G  
Sbjct: 11 RPRSFEEVVDLEEVKARLREFVKAGN-----LPHLLFYGPPGTGKTTMALVLARELYGEY 65

Query: 82 FRSTS 86
          +R  +
Sbjct: 66 WRENT 70


>gi|103487637|ref|YP_617198.1| recombination factor protein RarA [Sphingopyxis alaskensis RB2256]
 gi|98977714|gb|ABF53865.1| Recombination protein MgsA [Sphingopyxis alaskensis RB2256]
          Length = 439

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 58/115 (50%), Gaps = 9/115 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPR+L E  GQ E  +     I    A  + L  ++  GPPG GKTT+A+++A  + + 
Sbjct: 28  LRPRSLAEVVGQ-EHLTGTDGAIGRMVAAGQ-LSSIILWGPPGTGKTTIARLLAEAVKMR 85

Query: 82  FRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAME 130
           F + S  V +   DL     + E       R +LF+DEIHR +   ++   P +E
Sbjct: 86  FAALSA-VFSGVADLRQAFADAEKMAATGKRTLLFVDEIHRFNRAQQDGFLPYVE 139


>gi|329889161|ref|ZP_08267504.1| ATPase family associated with various cellular activities AAA
           family protein [Brevundimonas diminuta ATCC 11568]
 gi|328844462|gb|EGF94026.1| ATPase family associated with various cellular activities AAA
           family protein [Brevundimonas diminuta ATCC 11568]
          Length = 434

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 62/118 (52%), Gaps = 13/118 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+ L++  GQ   +     ++  IEA +     L  ++  GPPG GKTT+A+++A+  
Sbjct: 21  LRPQALDQVVGQDHLLGEGGPIRRMIEAGR-----LGSMILWGPPGTGKTTIARLLAKAA 75

Query: 79  GVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
           G  ++S S        + KA + A +      + +LF+DEIHR +   ++   P +E+
Sbjct: 76  GYEYQSISAVFSGVADLKKAFEAARMRRAAGQQTLLFVDEIHRFNRAQQDGFLPFVEE 133


>gi|238026471|ref|YP_002910702.1| recombination factor protein RarA [Burkholderia glumae BGR1]
 gi|237875665|gb|ACR27998.1| AAA ATPase, central region [Burkholderia glumae BGR1]
          Length = 436

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 16/119 (13%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL E  GQ     +   L++  E+ K  +     ++  GPPG+GKTTLA++ A   
Sbjct: 17  LRPKTLAEVIGQTHLLGDGKPLRLAFESGKPHS-----MILWGPPGVGKTTLARLTAHAF 71

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAME 130
              F + S  V+    D+   +    +         +LF+DEIHR +   ++ L P +E
Sbjct: 72  DCEFIAISA-VLGGVKDIRESMEQARETLNRSGRHTILFVDEIHRFNKSQQDALLPFVE 129


>gi|261418417|ref|YP_003252099.1| recombination factor protein RarA [Geobacillus sp. Y412MC61]
 gi|319767623|ref|YP_004133124.1| ATPase AAA [Geobacillus sp. Y412MC52]
 gi|261374874|gb|ACX77617.1| AAA ATPase central domain protein [Geobacillus sp. Y412MC61]
 gi|317112489|gb|ADU94981.1| AAA ATPase central domain protein [Geobacillus sp. Y412MC52]
          Length = 431

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 58/115 (50%), Gaps = 13/115 (11%)

Query: 22  LRPRTLEEFTGQVEACS-NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG- 79
           +RPRT++E  GQ      +  ++    K    +L   L  G PG GKT+LA  +AR  G 
Sbjct: 12  MRPRTIDEIVGQQHIIGPSTPLYKMVKKGHVPSL---LLYGEPGTGKTSLAYAIARTAGR 68

Query: 80  ----VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
               +N  +     I +A + A    N+    +LFIDEIHRL+   +++L P +E
Sbjct: 69  EWVAINATTAGKKEIEEAVEAARWSGNV----LLFIDEIHRLNKAQQDVLLPHLE 119


>gi|78065552|ref|YP_368321.1| recombination factor protein RarA [Burkholderia sp. 383]
 gi|77966297|gb|ABB07677.1| Recombination protein MgsA [Burkholderia sp. 383]
          Length = 436

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 58/119 (48%), Gaps = 16/119 (13%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL E  GQ         L++  E+ K  +     ++  GPPG+GKTTLA++ A   
Sbjct: 17  LRPKTLAEVIGQTHLLGEGKPLRLAFESGKPHS-----MILWGPPGVGKTTLARLTALAF 71

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAME 130
              F + S  V+    D+   +   +D         +LF+DEIHR +   ++ L P +E
Sbjct: 72  DCEFIALSA-VLGGVKDIRESMEQAKDTLNRTGRHTILFVDEIHRFNKGQQDALLPFVE 129


>gi|161898988|ref|YP_201181.2| recombination factor protein RarA [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|162319801|ref|YP_451430.2| recombination factor protein RarA [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|188576725|ref|YP_001913654.1| recombination factor protein RarA [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188576916|ref|YP_001913845.1| recombination factor protein RarA [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188521177|gb|ACD59122.1| ATPase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188521368|gb|ACD59313.1| ATPase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 458

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 66/137 (48%), Gaps = 14/137 (10%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL++  GQ   +   S L+  +E+ +  +     ++  GPPG GKTTLA ++A   
Sbjct: 29  MRPRTLDDMVGQKRLLAPDSALRRAVESGRVHS-----MILWGPPGCGKTTLALLLAHYA 83

Query: 79  GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
              F + S      P + +    AA       R VLF+DE+HR +   ++   P +E   
Sbjct: 84  DAEFNAISAVLSGLPEVRQVLAEAAQRFAGGRRTVLFVDEVHRFNKAQQDAFLPHIERGT 143

Query: 134 LDLMVGEGPSARSVKIN 150
           + L VG      S ++N
Sbjct: 144 I-LFVGATTENPSFELN 159


>gi|84367998|dbj|BAE69156.1| ATPase [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 430

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 66/137 (48%), Gaps = 14/137 (10%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL++  GQ   +   S L+  +E+ +  +     ++  GPPG GKTTLA ++A   
Sbjct: 1   MRPRTLDDMVGQKRLLAPDSALRRAVESGRVHS-----MILWGPPGCGKTTLALLLAHYA 55

Query: 79  GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
              F + S      P + +    AA       R VLF+DE+HR +   ++   P +E   
Sbjct: 56  DAEFNAISAVLSGLPEVRQVLAEAAQRFAGGRRTVLFVDEVHRFNKAQQDAFLPHIERGT 115

Query: 134 LDLMVGEGPSARSVKIN 150
           + L VG      S ++N
Sbjct: 116 I-LFVGATTENPSFELN 131


>gi|295425092|ref|ZP_06817797.1| AAA family ATPase [Lactobacillus amylolyticus DSM 11664]
 gi|295065151|gb|EFG56054.1| AAA family ATPase [Lactobacillus amylolyticus DSM 11664]
          Length = 438

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 17/124 (13%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L+E  GQ       K+     +A+   L  ++  GPPG+GKT++A  +A      
Sbjct: 8   MRPQNLDEVVGQQHLIGPGKIIRRMVEAKL--LSSMILYGPPGIGKTSIASAIAGSTKYA 65

Query: 82  FRSTSGPV--------IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           FR  +           +A+ G ++  +       +L +DEIHRL    ++ L P +E  Q
Sbjct: 66  FRKLNAATDSKKQLQQVAEEGKMSGTV-------ILLLDEIHRLDKTKQDFLLPLLESGQ 118

Query: 134 LDLM 137
           + L+
Sbjct: 119 IILI 122


>gi|225871301|ref|YP_002747248.1| ATPase [Streptococcus equi subsp. equi 4047]
 gi|225700705|emb|CAW95315.1| putative ATPase [Streptococcus equi subsp. equi 4047]
          Length = 423

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 59/126 (46%), Gaps = 18/126 (14%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRT+ E  GQ       K+     KA    L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPRTITEVIGQQHLVGEGKIIDRMVKA--NRLASMILYGPPGIGKTSIASAIAGTTKYA 66

Query: 82  FRSTSGPV--------IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           FR+ +  +        IA+    +  L       VL +DEIHRL    ++ L P +E   
Sbjct: 67  FRTFNATIDNKKRLQEIAEEAKFSGGL-------VLLLDEIHRLDKSKQDFLLPLLEHGH 119

Query: 134 LDLMVG 139
           + +M+G
Sbjct: 120 I-IMIG 124


>gi|85712404|ref|ZP_01043454.1| Uncharacterized ATPase related to the helicase subunit of the
           Holliday junction resolvase [Idiomarina baltica OS145]
 gi|85693847|gb|EAQ31795.1| Uncharacterized ATPase related to the helicase subunit of the
           Holliday junction resolvase [Idiomarina baltica OS145]
          Length = 451

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 100/230 (43%), Gaps = 45/230 (19%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEA-AKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           +R ++L+E+ GQ    +  K   +A A+ R   L  ++  GPPG GKTTLA+++A     
Sbjct: 21  MRAQSLDEYVGQTHLLAEGKPLWQAVAQGR---LHSMILWGPPGTGKTTLAELMATSADA 77

Query: 81  NFRS----TSG-PVIAKAGDLAALLTNLED-RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
                   TSG   I +A D A      +  R +LF+DE+HR +   ++   P +ED  +
Sbjct: 78  TVSRLSAITSGVKEIRQAIDEAKQRAKQQGRRTLLFVDEVHRFNKSQQDAFLPFIEDGTV 137

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGL-LTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
            + VG                  A T   G  L N L  R  +  RL   + EDL+ ++Q
Sbjct: 138 -IFVG------------------ATTENPGFELNNALLSRARV-YRLESIKAEDLRALLQ 177

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL-------RRVRDFAEVA 236
           R        + D      A   R TP    RLL       RR+ ++ EVA
Sbjct: 178 R-------TLQDPERGLGARHIRLTPEAEDRLLDLAGGDARRMLNYLEVA 220


>gi|94309639|ref|YP_582849.1| recombination factor protein RarA [Cupriavidus metallidurans CH34]
 gi|93353491|gb|ABF07580.1| recombination protein [Cupriavidus metallidurans CH34]
          Length = 445

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 121/294 (41%), Gaps = 54/294 (18%)

Query: 22  LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPR ++E  GQ         L+V  E+ +  +     ++  GPPG+GKTTLA+++A   
Sbjct: 21  LRPRNIDEVIGQQHLLGPGKPLRVAFESGEPHS-----MILWGPPGVGKTTLARLMANAF 75

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDF 132
              F + S  V++   D+   +   E       R ++F+DE+HR +   ++   P +E  
Sbjct: 76  DAEFIALSA-VLSGVKDIREAVERAEQFRAHGRRTLVFVDEVHRFNKSQQDAFLPHVES- 133

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL--TNPLQDRFGIPIRLNFYEIEDLKT 190
                                FT I ATT          L  R  + +  +  E E LK 
Sbjct: 134 -------------------GLFTFIGATTENPSFEVNGALLSRAAVYVLKSLNEDE-LKQ 173

Query: 191 IVQRGA-KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
           +V R + +L G+   DEA   I   + G  R   +LL  +   A  A    +  +  D A
Sbjct: 174 LVLRASEELGGIRWDDEAMGLIVASADGDGR---KLLNNIEIVARAARNAGV--DAVDTA 228

Query: 250 LLRLAI-------DKMG---FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
           LL  A+       DK G   +DQ+   + ++   +  G       +  G ++PR
Sbjct: 229 LLGSALSENLRRFDKGGDAFYDQISALHKSVRGSDPDGALYWFCRMLDGGADPR 282


>gi|322390784|ref|ZP_08064294.1| AAA family ATPase [Streptococcus parasanguinis ATCC 903]
 gi|321142454|gb|EFX37922.1| AAA family ATPase [Streptococcus parasanguinis ATCC 903]
          Length = 434

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRT+++  GQ       K+     +A    L  ++  GPPG+GKT++A  +A      
Sbjct: 20  MRPRTIDQVIGQQHLVGEGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTKYA 77

Query: 82  FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +  V +K       + A     L    VL +DEIHRL    ++ L P +E   L +
Sbjct: 78  FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 132

Query: 137 MVG 139
           M+G
Sbjct: 133 MIG 135


>gi|262394648|ref|YP_003286502.1| ATPase AAA family [Vibrio sp. Ex25]
 gi|262338242|gb|ACY52037.1| ATPase AAA family [Vibrio sp. Ex25]
          Length = 449

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 11/148 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+T+E++ GQ       K    A +A    +  ++  GPPG GKTTLA+V A      
Sbjct: 21  MRPQTIEQYIGQQHILGPGKPLRRALEAGH--IHSMILWGPPGTGKTTLAEVAANYANAE 78

Query: 82  FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
               S  V +   ++ A +    +      R +LF+DE+HR +   ++   P +ED  + 
Sbjct: 79  VERVSA-VTSGVKEIRAAIDKARENKMAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVT 137

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATT 161
            +    E PS       LSR  +   T+
Sbjct: 138 FIGATTENPSFELNNALLSRARVYKLTS 165


>gi|67484070|ref|XP_657255.1| AAA family ATPase [Entamoeba histolytica HM-1:IMSS]
 gi|56474503|gb|EAL51869.1| AAA family ATPase, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 611

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 69/145 (47%), Gaps = 13/145 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+ LE+  GQ +  +    F      + + +   +  GPPG GKTT+A ++       F
Sbjct: 50  RPKNLEDIIGQEDILAIGTPF--NTMIKNDKIQSTILYGPPGCGKTTIAGIIKNNSKSTF 107

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
            S S    +K  D   ++ + + R       +LF+DEIH L+ + ++   PA+E   + +
Sbjct: 108 ISMSA-ASSKKEDFKKVINDAKHRKRMGINTILFLDEIHSLNRLQQDTFLPAIESGTI-I 165

Query: 137 MVGEGPSARSVKIN---LSRFTLIA 158
           ++G      S ++N   +SR  L+ 
Sbjct: 166 LIGATTENPSFELNNALMSRCQLVT 190


>gi|225164815|ref|ZP_03727041.1| AAA ATPase central domain protein [Opitutaceae bacterium TAV2]
 gi|224800567|gb|EEG18937.1| AAA ATPase central domain protein [Opitutaceae bacterium TAV2]
          Length = 401

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 5/85 (5%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLT----NLEDRDVLFID 112
           +LF GPPG GKT+ A+ +AR+ G  F   +  V++   +L  +L       E   +LFID
Sbjct: 9   LLFYGPPGCGKTSFAEAIARQTGSRFVRLNA-VMSNVAELREILALARRTPESPTLLFID 67

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLM 137
           E+HR +   +++L P +E+  + L+
Sbjct: 68  ELHRFNKSQQDLLLPDVEEGYVRLI 92


>gi|325267281|ref|ZP_08133943.1| replication-associated recombination protein A [Kingella
           denitrificans ATCC 33394]
 gi|324981218|gb|EGC16868.1| replication-associated recombination protein A [Kingella
           denitrificans ATCC 33394]
          Length = 435

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 15/118 (12%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+ L++  GQ         L+V +E+    +     +L  G PG+GKTTLA+++A+  
Sbjct: 17  LRPQNLDDVLGQEHLTGEGKPLRVAMESGIPHS-----MLLWGSPGIGKTTLARIIAQGF 71

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAME 130
           G  F   S  V +   D+   +   E       R +LF+DE+HR +   ++   P +E
Sbjct: 72  GAQFLPVSA-VFSGVKDIREAIQKAEAAWQRQQRTILFVDEVHRFNKAQQDAFLPHVE 128


>gi|254225502|ref|ZP_04919112.1| conserved hypothetical protein [Vibrio cholerae V51]
 gi|125621972|gb|EAZ50296.1| conserved hypothetical protein [Vibrio cholerae V51]
          Length = 449

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 11/148 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+T+E++ GQ       K    A +A    +  ++  GPPG GKTTLA+V A      
Sbjct: 21  MRPQTVEQYIGQQHILGPGKPLRRALEA--GHIHSMILWGPPGTGKTTLAEVAANYANAE 78

Query: 82  FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
               S  V +   ++ A +    +      R +LF+DE+HR +   ++   P +ED  + 
Sbjct: 79  VERVSA-VTSGVKEIRAAIEKARENKLSGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVT 137

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATT 161
            +    E PS       LSR  +   T+
Sbjct: 138 FIGATTENPSFELNNALLSRARVYKLTS 165


>gi|15641121|ref|NP_230753.1| recombination factor protein RarA [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121591286|ref|ZP_01678581.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|153816923|ref|ZP_01969590.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|153823890|ref|ZP_01976557.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|227081281|ref|YP_002809832.1| hypothetical protein VCM66_1064 [Vibrio cholerae M66-2]
 gi|229505296|ref|ZP_04394806.1| ATPase AAA family [Vibrio cholerae BX 330286]
 gi|229511034|ref|ZP_04400513.1| ATPase AAA family [Vibrio cholerae B33]
 gi|229518155|ref|ZP_04407599.1| ATPase AAA family [Vibrio cholerae RC9]
 gi|229608315|ref|YP_002878963.1| recombination factor protein RarA [Vibrio cholerae MJ-1236]
 gi|254848238|ref|ZP_05237588.1| recombination factor protein RarA [Vibrio cholerae MO10]
 gi|255745521|ref|ZP_05419469.1| holliday junction DNA helicase RuvB [Vibrio cholera CIRS 101]
 gi|262158405|ref|ZP_06029521.1| holliday junction DNA helicase RuvB [Vibrio cholerae INDRE 91/1]
 gi|298498787|ref|ZP_07008594.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
 gi|9655578|gb|AAF94267.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121546870|gb|EAX57028.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|126512510|gb|EAZ75104.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|126518593|gb|EAZ75816.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|227009169|gb|ACP05381.1| conserved hypothetical protein [Vibrio cholerae M66-2]
 gi|229344870|gb|EEO09844.1| ATPase AAA family [Vibrio cholerae RC9]
 gi|229350999|gb|EEO15940.1| ATPase AAA family [Vibrio cholerae B33]
 gi|229357519|gb|EEO22436.1| ATPase AAA family [Vibrio cholerae BX 330286]
 gi|229370970|gb|ACQ61393.1| ATPase AAA family [Vibrio cholerae MJ-1236]
 gi|254843943|gb|EET22357.1| recombination factor protein RarA [Vibrio cholerae MO10]
 gi|255736596|gb|EET91993.1| holliday junction DNA helicase RuvB [Vibrio cholera CIRS 101]
 gi|262029846|gb|EEY48494.1| holliday junction DNA helicase RuvB [Vibrio cholerae INDRE 91/1]
 gi|297543120|gb|EFH79170.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
          Length = 449

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 11/148 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+T+E++ GQ       K    A +A    +  ++  GPPG GKTTLA+V A      
Sbjct: 21  MRPQTVEQYIGQQHILGPGKPLRRALEA--GHIHSMILWGPPGTGKTTLAEVAANYANAE 78

Query: 82  FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
               S  V +   ++ A +    +      R +LF+DE+HR +   ++   P +ED  + 
Sbjct: 79  VERVSA-VTSGVKEIRAAIEKARENKLSGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVT 137

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATT 161
            +    E PS       LSR  +   T+
Sbjct: 138 FIGATTENPSFELNNALLSRARVYKLTS 165


>gi|296877179|ref|ZP_06901219.1| AAA family ATPase [Streptococcus parasanguinis ATCC 15912]
 gi|296431699|gb|EFH17506.1| AAA family ATPase [Streptococcus parasanguinis ATCC 15912]
          Length = 434

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRT+++  GQ       K+     +A    L  ++  GPPG+GKT++A  +A      
Sbjct: 20  MRPRTIDQVIGQQHLVGEGKIIRRMVEANR--LSSMILYGPPGIGKTSIASAIAGTTKYA 77

Query: 82  FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +  V +K       + A     L    VL +DEIHRL    ++ L P +E   L +
Sbjct: 78  FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 132

Query: 137 MVG 139
           M+G
Sbjct: 133 MIG 135


>gi|147902451|ref|NP_001089187.1| Werner helicase interacting protein 1 [Xenopus laevis]
 gi|63147358|dbj|BAD98297.1| Werner helicase interacting protein 1 [Xenopus laevis]
          Length = 572

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 69/155 (44%), Gaps = 29/155 (18%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKAR----AEALDHVLFVGPPGLGKTTLAQVVARE 77
           +RP TL  + GQ       KV  E    R    A  +  ++  GPPG GKTTLA ++A+ 
Sbjct: 154 MRPTTLNNYMGQN------KVLGENTMLRNLLQANDIPSIILWGPPGCGKTTLAHIIAKN 207

Query: 78  LG------VNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEI 124
                   V   +TS    A   D+   +   ++       + +LF+DEIHR + + ++ 
Sbjct: 208 AQKSSSRFVTLSATS----ASTSDVREFIKQAQNEQRLFKRKTILFVDEIHRFNKMQQDT 263

Query: 125 LYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLI 157
             P +E   + L+    E PS +     LSR  +I
Sbjct: 264 FLPHVECGTITLIGATTENPSFQVNTALLSRCRVI 298


>gi|312139551|ref|YP_004006887.1| ATPase AAA [Rhodococcus equi 103S]
 gi|311888890|emb|CBH48203.1| putative AAA ATPase [Rhodococcus equi 103S]
          Length = 468

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 49/146 (33%), Positives = 71/146 (48%), Gaps = 23/146 (15%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP  L E  GQ   +   + L+  +E + A +     VL  GPPG GKTTLA +++   
Sbjct: 49  MRPAALSEVVGQQHLLAPGAPLRRLVEGSGASS-----VLLYGPPGTGKTTLASLISGAT 103

Query: 79  GVNFRSTSGPVIAKAG--------DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           G  F + S      AG        +LA       ++ VLFIDE+HR S   ++ L  A+E
Sbjct: 104 GRKFEALSA---LSAGVKEVRGVIELARRRLLQGEQTVLFIDEVHRFSKTQQDALLAAVE 160

Query: 131 DFQLDLMVG---EGPSARSVKINLSR 153
           + ++ L+V    E PS   V   LSR
Sbjct: 161 N-RIVLLVAATTENPSFSVVSPLLSR 185


>gi|58426759|gb|AAW75796.1| ATPase [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 517

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 66/137 (48%), Gaps = 14/137 (10%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL++  GQ   +   S L+  +E+ +  +     ++  GPPG GKTTLA ++A   
Sbjct: 88  MRPRTLDDMVGQKRLLAPDSALRRAVESGRVHS-----MILWGPPGCGKTTLALLLAHYA 142

Query: 79  GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
              F + S      P + +    AA       R VLF+DE+HR +   ++   P +E   
Sbjct: 143 DAEFNAISAVLSGLPEVRQVLAEAAQRFAGGRRTVLFVDEVHRFNKAQQDAFLPHIERGT 202

Query: 134 LDLMVGEGPSARSVKIN 150
           + L VG      S ++N
Sbjct: 203 I-LFVGATTENPSFELN 218


>gi|312868089|ref|ZP_07728293.1| recombination factor protein RarA [Streptococcus parasanguinis
           F0405]
 gi|311096493|gb|EFQ54733.1| recombination factor protein RarA [Streptococcus parasanguinis
           F0405]
          Length = 423

 Score = 52.4 bits (124), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRT+++  GQ       K+     +A    L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPRTIDQVIGQQHLVGEGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTKYA 66

Query: 82  FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +  V +K       + A     L    VL +DEIHRL    ++ L P +E   L +
Sbjct: 67  FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121

Query: 137 MVG 139
           M+G
Sbjct: 122 MIG 124


>gi|301321559|gb|ADK68949.1| helicase subunit of the Holliday junction resolvase-like ATPase
           [Gordonia sp. KTR9]
          Length = 429

 Score = 52.4 bits (124), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 74/163 (45%), Gaps = 21/163 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP+TL++  GQ       S L+  I  + A       VL   PP  GKT+ A+++A   
Sbjct: 1   MRPKTLDDLVGQDHLTTPGSPLQQLISGSIAAPS----VLLWAPPATGKTSTARIIAENT 56

Query: 79  GVNF---RSTSGPV----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
              F    +TS  V     A     A L  +     VLFIDEIHR S   ++IL PA+E 
Sbjct: 57  ESRFVELSATSAGVKEVRSAVTEAQAGLAADPPVSTVLFIDEIHRFSKAQQDILLPAVES 116

Query: 132 FQLDLM--VGEGPS-----ARSVKINLSRFTLIAATTRVGLLT 167
             + L+    E PS     A   +  L R   ++ T+ V +LT
Sbjct: 117 GTVSLIGATTENPSFSVNPALRSRAILLRLKPLSQTSIVSILT 159


>gi|241894974|ref|ZP_04782270.1| crossover junction endodeoxyribonuclease [Weissella
           paramesenteroides ATCC 33313]
 gi|241871692|gb|EER75443.1| crossover junction endodeoxyribonuclease [Weissella
           paramesenteroides ATCC 33313]
          Length = 429

 Score = 52.4 bits (124), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 3/117 (2%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR + E  GQ     + K+      A+   L  ++  GPPG GKT++A  +A      
Sbjct: 9   MRPRNISEVVGQQHLVGDGKIINRMVTAKM--LSSMILYGPPGTGKTSIASAIAGSTKYA 66

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           FR  +     K    + A    +    VL +DEIHRL    ++ L P +E  ++ L+
Sbjct: 67  FRILNAATDTKKDLQIVAEEAKMSGTVVLLLDEIHRLDKTKQDFLLPHLESGRIVLI 123


>gi|126737037|ref|ZP_01752772.1| ATPase [Roseobacter sp. SK209-2-6]
 gi|126721622|gb|EBA18325.1| ATPase [Roseobacter sp. SK209-2-6]
          Length = 437

 Score = 52.4 bits (124), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 94/229 (41%), Gaps = 16/229 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPR+L+E  GQ    +   V     +  A  L  ++  GPPG+GKT++A+ V   L   
Sbjct: 20  LRPRSLDEVVGQKTLTAKGSVLRR--RIAANQLGSIVLYGPPGVGKTSIARAVGEMLNKE 77

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVL-FIDEIHRLSIIVEEILYPAMEDFQLDLM--V 138
           F+       A   D+  L      R +L F+DE+HR S    + L    E+   D +   
Sbjct: 78  FKQLHA-TRAGVKDIRQLADEARIRPILIFVDEVHRFSATQADDLLSICEEGTADFIGAT 136

Query: 139 GEGPSARSVKINLSRFTL-----IAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTI 191
            + P     K  +SR T+     IA      +L   L+     GI + L     E L+ I
Sbjct: 137 TQNPYTALPKALVSRSTILKLEPIAIEDMEAVLARGLEHLAEMGIEVVL---APEQLRII 193

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
             R       A+T   +  I     G+ ++   +L  V   A V H ++
Sbjct: 194 AGRSGGDARSALTTLESLAIGHGDSGSVKVTDDMLEEVYRAAPVNHDRS 242


>gi|153213560|ref|ZP_01948850.1| conserved hypothetical protein [Vibrio cholerae 1587]
 gi|153824929|ref|ZP_01977596.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
 gi|153828124|ref|ZP_01980791.1| ATPase, AAA family [Vibrio cholerae 623-39]
 gi|229520459|ref|ZP_04409884.1| ATPase AAA family [Vibrio cholerae TM 11079-80]
 gi|261210730|ref|ZP_05925022.1| ATPase AAA family [Vibrio sp. RC341]
 gi|124115896|gb|EAY34716.1| conserved hypothetical protein [Vibrio cholerae 1587]
 gi|148876366|gb|EDL74501.1| ATPase, AAA family [Vibrio cholerae 623-39]
 gi|149741441|gb|EDM55471.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
 gi|229342557|gb|EEO07550.1| ATPase AAA family [Vibrio cholerae TM 11079-80]
 gi|260840215|gb|EEX66795.1| ATPase AAA family [Vibrio sp. RC341]
          Length = 449

 Score = 52.4 bits (124), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 11/148 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+T+E++ GQ       K    A +A    +  ++  GPPG GKTTLA+V A      
Sbjct: 21  MRPQTVEQYIGQQHILGPGKPLRRALEA--GHIHSMILWGPPGTGKTTLAEVAANYANAE 78

Query: 82  FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
               S  V +   ++ A +    +      R +LF+DE+HR +   ++   P +ED  + 
Sbjct: 79  VERVSA-VTSGVKEIRAAIEKARENKLSGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVT 137

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATT 161
            +    E PS       LSR  +   T+
Sbjct: 138 FIGATTENPSFELNNALLSRARVYKLTS 165


>gi|121726259|ref|ZP_01679549.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|229515491|ref|ZP_04404950.1| ATPase AAA family [Vibrio cholerae TMA 21]
 gi|229529802|ref|ZP_04419192.1| ATPase AAA family [Vibrio cholerae 12129(1)]
 gi|121631205|gb|EAX63578.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|229333576|gb|EEN99062.1| ATPase AAA family [Vibrio cholerae 12129(1)]
 gi|229347260|gb|EEO12220.1| ATPase AAA family [Vibrio cholerae TMA 21]
 gi|327483813|gb|AEA78220.1| ATPase, AAA family [Vibrio cholerae LMA3894-4]
          Length = 449

 Score = 52.4 bits (124), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 11/148 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+T+E++ GQ       K    A +A    +  ++  GPPG GKTTLA+V A      
Sbjct: 21  MRPQTVEQYIGQQHILGPGKPLRRALEA--GHIHSMILWGPPGTGKTTLAEVAANYANAE 78

Query: 82  FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
               S  V +   ++ A +    +      R +LF+DE+HR +   ++   P +ED  + 
Sbjct: 79  VERVSA-VTSGVKEIRAAIEKARENKLSGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVT 137

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATT 161
            +    E PS       LSR  +   T+
Sbjct: 138 FIGATTENPSFELNNALLSRARVYKLTS 165


>gi|262402531|ref|ZP_06079092.1| ATPase AAA family [Vibrio sp. RC586]
 gi|262351313|gb|EEZ00446.1| ATPase AAA family [Vibrio sp. RC586]
          Length = 449

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 11/148 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+T+E++ GQ       K    A +A    +  ++  GPPG GKTTLA+V A      
Sbjct: 21  MRPQTVEQYIGQQHILGPGKPLRRALEA--GHIHSMILWGPPGTGKTTLAEVAANYANAE 78

Query: 82  FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
               S  V +   ++ A +    +      R +LF+DE+HR +   ++   P +ED  + 
Sbjct: 79  VERVSA-VTSGVKEIRAAIEKARENKLSGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVT 137

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATT 161
            +    E PS       LSR  +   T+
Sbjct: 138 FIGATTENPSFELNNALLSRARVYKLTS 165


>gi|229822983|ref|ZP_04449053.1| hypothetical protein GCWU000282_00275 [Catonella morbi ATCC 51271]
 gi|229787796|gb|EEP23910.1| hypothetical protein GCWU000282_00275 [Catonella morbi ATCC 51271]
          Length = 424

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 64/131 (48%), Gaps = 6/131 (4%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR LE+  GQ       K+     +A+   L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPRQLEDILGQEHLVGPGKIIHRMVQAKR--LTSMILYGPPGIGKTSIASAIAGSTRYA 66

Query: 82  FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
           FR+ +     K  +L  ++         +L +DEIHRL+   ++ L P +E  ++ +++G
Sbjct: 67  FRTLNAATDGKK-ELEQVVEEAKFSGTLILLLDEIHRLNTTKQDFLLPHLESGRI-ILIG 124

Query: 140 EGPSARSVKIN 150
                  + IN
Sbjct: 125 ATTENPYIAIN 135


>gi|297578710|ref|ZP_06940638.1| ATPase [Vibrio cholerae RC385]
 gi|297536304|gb|EFH75137.1| ATPase [Vibrio cholerae RC385]
          Length = 449

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 11/148 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+T+E++ GQ       K    A +A    +  ++  GPPG GKTTLA+V A      
Sbjct: 21  MRPQTVEQYIGQQHILGPGKPLRRALEA--GHIHSMILWGPPGTGKTTLAEVAANYANAE 78

Query: 82  FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
               S  V +   ++ A +    +      R +LF+DE+HR +   ++   P +ED  + 
Sbjct: 79  VERVSA-VTSGVKEIRAAIEKARENKLSGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVT 137

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATT 161
            +    E PS       LSR  +   T+
Sbjct: 138 FIGATTENPSFELNNALLSRARVYKLTS 165


>gi|292493395|ref|YP_003528834.1| ATPase AAA [Nitrosococcus halophilus Nc4]
 gi|291581990|gb|ADE16447.1| AAA ATPase central domain protein [Nitrosococcus halophilus Nc4]
          Length = 454

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 103/248 (41%), Gaps = 49/248 (19%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP+ L++F GQ   ++  + L+  IE  +  +     ++  GPPG GKTTLA+++A   
Sbjct: 33  MRPQKLDDFVGQSHLLDKGAPLRQAIETGRPHS-----MVLWGPPGTGKTTLARLIAHYC 87

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131
              F S S  V+A   ++ A +   +          VLF+DE+HR +   ++   P +E+
Sbjct: 88  QAQFISLSA-VLAGVKEVRAAVDKAQRVRSEEGYGTVLFVDEVHRFNKSQQDAFLPYVEN 146

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL--LTNPLQDRFGIPIRLNFYEIEDLK 189
                                 F  I ATT      L N L  R  + + L    + D+ 
Sbjct: 147 --------------------GTFIFIGATTENPSFELNNALLSRCRVYV-LKCLRVGDIC 185

Query: 190 TIVQR-------GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           T++ R       G     L + +     +A  + G  R A  LL    D AE    KTI 
Sbjct: 186 TLINRALADPEQGLGRRSLTMAETLCQRLAEAADGDARRALNLLEIASDLAE---KKTIP 242

Query: 243 REIADAAL 250
            E+ +  L
Sbjct: 243 EELLNQVL 250


>gi|258626330|ref|ZP_05721177.1| conserved hypothetical protein [Vibrio mimicus VM603]
 gi|258581382|gb|EEW06284.1| conserved hypothetical protein [Vibrio mimicus VM603]
          Length = 449

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 11/148 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+T+E++ GQ       K    A +A    +  ++  GPPG GKTTLA+V A      
Sbjct: 21  MRPQTVEQYIGQQHILGPGKPLRRALEA--GHIHSMILWGPPGTGKTTLAEVAANYANAE 78

Query: 82  FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
               S  V +   ++ A +    +      R +LF+DE+HR +   ++   P +ED  + 
Sbjct: 79  VERVSA-VTSGVKEIRAAIEKARENKLSGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVT 137

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATT 161
            +    E PS       LSR  +   T+
Sbjct: 138 FIGATTENPSFELNNALLSRARVYKLTS 165


>gi|254291532|ref|ZP_04962323.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
 gi|150422596|gb|EDN14552.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
          Length = 449

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 11/148 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+T+E++ GQ       K    A +A    +  ++  GPPG GKTTLA+V A      
Sbjct: 21  MRPQTVEQYIGQQHILGPGKPLRRALEA--GHIHSMILWGPPGTGKTTLAEVAANYANAE 78

Query: 82  FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
               S  V +   ++ A +    +      R +LF+DE+HR +   ++   P +ED  + 
Sbjct: 79  VERVSA-VTSGVKEIRAAIEKARENKLSGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVT 137

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATT 161
            +    E PS       LSR  +   T+
Sbjct: 138 FIGATTENPSFELNNALLSRARVYKLTS 165


>gi|262165385|ref|ZP_06033122.1| ATPase AAA family [Vibrio mimicus VM223]
 gi|262025101|gb|EEY43769.1| ATPase AAA family [Vibrio mimicus VM223]
          Length = 449

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 11/148 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+T+E++ GQ       K    A +A    +  ++  GPPG GKTTLA+V A      
Sbjct: 21  MRPQTVEQYIGQQHILGPGKPLRRALEA--GHIHSMILWGPPGTGKTTLAEVAANYANAE 78

Query: 82  FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
               S  V +   ++ A +    +      R +LF+DE+HR +   ++   P +ED  + 
Sbjct: 79  VERVSA-VTSGVKEIRAAIEKARENKLSGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVT 137

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATT 161
            +    E PS       LSR  +   T+
Sbjct: 138 FIGATTENPSFELNNALLSRARVYKLTS 165


>gi|325672565|ref|ZP_08152261.1| AAA family ATPase [Rhodococcus equi ATCC 33707]
 gi|325556442|gb|EGD26108.1| AAA family ATPase [Rhodococcus equi ATCC 33707]
          Length = 468

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 49/146 (33%), Positives = 71/146 (48%), Gaps = 23/146 (15%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP  L E  GQ   +   + L+  +E + A +     VL  GPPG GKTTLA +++   
Sbjct: 49  MRPAALSEVVGQQHLLAPGAPLRRLVEGSGASS-----VLLYGPPGTGKTTLASLISGAT 103

Query: 79  GVNFRSTSGPVIAKAG--------DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           G  F + S      AG        +LA       ++ VLFIDE+HR S   ++ L  A+E
Sbjct: 104 GRKFEALSA---LSAGVKEVRGVIELARRRLLQGEQTVLFIDEVHRFSKTQQDALLAAVE 160

Query: 131 DFQLDLMVG---EGPSARSVKINLSR 153
           + ++ L+V    E PS   V   LSR
Sbjct: 161 N-RIVLLVAATTENPSFSVVSPLLSR 185


>gi|147673167|ref|YP_001216577.1| recombination factor protein RarA [Vibrio cholerae O395]
 gi|262170267|ref|ZP_06037954.1| ATPase AAA family [Vibrio cholerae RC27]
 gi|146315050|gb|ABQ19589.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|227012923|gb|ACP09133.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|262021282|gb|EEY39996.1| ATPase AAA family [Vibrio cholerae RC27]
          Length = 449

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 11/148 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+T+E++ GQ       K    A +A    +  ++  GPPG GKTTLA+V A      
Sbjct: 21  MRPQTVEQYIGQQHILGPGKPLRRALEA--GHIHSMILWGPPGTGKTTLAEVAANYANAE 78

Query: 82  FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
               S  V +   ++ A +    +      R +LF+DE+HR +   ++   P +ED  + 
Sbjct: 79  VERVSA-VTSGVKEIRAAIEKARENKLSGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVT 137

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATT 161
            +    E PS       LSR  +   T+
Sbjct: 138 FIGATTENPSFELNNALLSRARVYKLTS 165


>gi|332686848|ref|YP_004456622.1| ATPase [Melissococcus plutonius ATCC 35311]
 gi|332370857|dbj|BAK21813.1| uncharacterized ATPase (AAA family) associated with cysteine
           desulfurase [Melissococcus plutonius ATCC 35311]
          Length = 426

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 61/131 (46%), Gaps = 6/131 (4%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L +  GQ +     K+     K +   L  ++  GPPG GKT++A  +A      
Sbjct: 9   MRPKQLSDVVGQKQLVDKDKIIYRMVKTKM--LTSMILYGPPGTGKTSIASAIAGSTNYA 66

Query: 82  FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
           FR  +     K  DL  ++    +    +L +DE+HRL    ++ L P +E  ++ +++G
Sbjct: 67  FRMLNAATDTKK-DLQIVVDEAKMSGTVILLLDEVHRLDKTKQDFLLPHLESGKI-ILIG 124

Query: 140 EGPSARSVKIN 150
                  + IN
Sbjct: 125 ATTENPYISIN 135


>gi|328473159|gb|EGF44007.1| recombination factor protein RarA [Vibrio parahaemolyticus 10329]
          Length = 449

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 11/148 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+T+E++ GQ       K    A +A    +  ++  GPPG GKTTLA+V A      
Sbjct: 21  MRPQTIEQYIGQQHILGPGKPLRRALEAGH--VHSMILWGPPGTGKTTLAEVAANYANAE 78

Query: 82  FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
               S  V +   ++ A +    +      R +LF+DE+HR +   ++   P +ED  + 
Sbjct: 79  VERVSA-VTSGVKEIRAAIEKARENKMAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVT 137

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATT 161
            +    E PS       LSR  +   T+
Sbjct: 138 FIGATTENPSFELNNALLSRARVYKLTS 165


>gi|256383802|gb|ACU78372.1| recombination factor protein RarA [Mycoplasma mycoides subsp. capri
           str. GM12]
 gi|256384632|gb|ACU79201.1| recombination factor protein RarA [Mycoplasma mycoides subsp. capri
           str. GM12]
 gi|296455903|gb|ADH22138.1| recombination factor protein RarA [synthetic Mycoplasma mycoides
           JCVI-syn1.0]
          Length = 411

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 15/117 (12%)

Query: 21  LLRPRTLEEFTGQVEACS-----NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           LLRP+T ++  GQ E        N  +  +   +       ++F GP G+GKT+ A  +A
Sbjct: 8   LLRPKTTKDIIGQTEILKPNGLINKMILNDYCTS-------LIFYGPSGVGKTSFAISLA 60

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTN--LEDRDVLFIDEIHRLSIIVEEILYPAME 130
            +L +++   +     K   L +++    L+DR +L IDEIHRL+   ++IL   ME
Sbjct: 61  NDLKIDYEIFNASY-DKKEKLTSIIQKALLQDRFILIIDEIHRLNKDKQDILLEYME 116


>gi|75675584|ref|YP_318005.1| recombination factor protein RarA [Nitrobacter winogradskyi Nb-255]
 gi|74420454|gb|ABA04653.1| Recombination protein MgsA [Nitrobacter winogradskyi Nb-255]
          Length = 443

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 10/135 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L +  GQ              + R   L  ++F GPPG GKTT+A+++A    ++
Sbjct: 30  LRPQMLSDVVGQDHILGPDGALTRMLETRT--LGSLIFWGPPGTGKTTVARLLADATALH 87

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F   S  V +   DL         R       +LF+DE+HR +   ++   P MED  + 
Sbjct: 88  FEQLSA-VFSGVNDLKKAFEAARARRESGTGTLLFVDEVHRFNRAQQDSFLPVMEDGTV- 145

Query: 136 LMVGEGPSARSVKIN 150
           ++VG      S ++N
Sbjct: 146 VLVGATTENPSFELN 160


>gi|258645316|ref|ZP_05732785.1| ATPase, AAA family [Dialister invisus DSM 15470]
 gi|260402665|gb|EEW96212.1| ATPase, AAA family [Dialister invisus DSM 15470]
          Length = 474

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 95/222 (42%), Gaps = 38/222 (17%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  L++  GQ E+      F+     R + +  +L  GPPG GKTT+A V+A+     
Sbjct: 61  MRPEILDDIIGQDESVGK-NSFLYKMIER-DTVPSLLLFGPPGCGKTTIASVIAKMTKFK 118

Query: 82  F---RSTSGPVIAKAGDLAALLTNLE---DRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F    +TS         + A    L+    R ++FIDE+HR +   +++L P +E+    
Sbjct: 119 FLKLNATSSGAKEIRDIVPAAQKELQYYGRRTIVFIDEVHRFNRAQQDLLLPYVEN---- 174

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGL--LTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
                             F LI ATT      L   L  R  + I L    I+ +  I+Q
Sbjct: 175 ----------------GTFILIGATTENPYFELNGSLLSRIRL-IHLKPLSIDSIVLILQ 217

Query: 194 RGA--KLTGLAVTDEAACEIAMR-----SRGTPRIAGRLLRR 228
           +    K  GL + D  A EI ++     + G  RIA  LL +
Sbjct: 218 KALTDKNKGLGMHDYHADEIVLKNIAAYAAGDTRIALNLLEQ 259


>gi|117620641|ref|YP_856398.1| recombination factor protein RarA [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117562048|gb|ABK38996.1| ATPase, AAA family [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 451

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 66/140 (47%), Gaps = 11/140 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+TLE++ GQ       K   +A    A     ++  GPPG GKTTLA+++A      
Sbjct: 25  MRPQTLEQYIGQQHILGPDKPLRKAI--LAGHCHSMILWGPPGTGKTTLAELMAHYCQAE 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
               S  V +   ++ A +   ++      R +LF+DE+HR +   +++  P +ED  + 
Sbjct: 83  VERLSA-VTSGIKEIRAAIDKAKENSWRGVRTILFVDEVHRFNKSQQDVFLPHIEDGTIT 141

Query: 136 LM--VGEGPSARSVKINLSR 153
            +    E PS       LSR
Sbjct: 142 FIGATTENPSFELNNALLSR 161


>gi|262171856|ref|ZP_06039534.1| ATPase AAA family [Vibrio mimicus MB-451]
 gi|261892932|gb|EEY38918.1| ATPase AAA family [Vibrio mimicus MB-451]
          Length = 449

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 11/148 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+T+E++ GQ       K    A +A    +  ++  GPPG GKTTLA+V A      
Sbjct: 21  MRPQTVEQYIGQQHILGPGKPLRRALEA--GHIHSMILWGPPGTGKTTLAEVAANYANAE 78

Query: 82  FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
               S  V +   ++ A +    +      R +LF+DE+HR +   ++   P +ED  + 
Sbjct: 79  VERVSA-VTSGVKEIRAAIEKARENKLSGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVT 137

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATT 161
            +    E PS       LSR  +   T+
Sbjct: 138 FIGATTENPSFELNNALLSRARVYKLTS 165


>gi|254439267|ref|ZP_05052761.1| ATPase, AAA family protein [Octadecabacter antarcticus 307]
 gi|198254713|gb|EDY79027.1| ATPase, AAA family protein [Octadecabacter antarcticus 307]
          Length = 435

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 76/154 (49%), Gaps = 25/154 (16%)

Query: 22  LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP++L +  GQ +     + L V + +    +     ++F GPPG+GKTT+A+++A E 
Sbjct: 23  LRPKSLGDVIGQEQVLGPDAPLGVMLSSGSLSS-----LIFWGPPGVGKTTIARLLADET 77

Query: 79  GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
            + F   S      P + K  + A +        +LF+DEIHR +   ++   P MED  
Sbjct: 78  DLYFIQISAIFTGMPDLRKVFEAAKMRRENGKGTLLFVDEIHRFNKAQQDGFLPHMEDGT 137

Query: 134 LDLMVG---EGPS--------ARSVKINLSRFTL 156
           + L+VG   E PS        +RS  + L R TL
Sbjct: 138 I-LLVGATTENPSFELNSAVLSRSQVLVLERLTL 170


>gi|148981576|ref|ZP_01816463.1| hypothetical protein VSWAT3_04716 [Vibrionales bacterium SWAT-3]
 gi|145960819|gb|EDK26153.1| hypothetical protein VSWAT3_04716 [Vibrionales bacterium SWAT-3]
          Length = 449

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 88/221 (39%), Gaps = 25/221 (11%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP T+E++ GQ       K    A +A    +  ++  GPPG GKTTLA+V A      
Sbjct: 21  MRPETVEQYIGQQHILGPGKPLRRALEAGH--IHSMILWGPPGTGKTTLAEVAANYANAE 78

Query: 82  FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
               S  V +   D+   +    +      R +LF+DE+HR +   ++   P +ED  + 
Sbjct: 79  VERVSA-VTSGVKDIRIAIEKARENKQAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVT 137

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
            +    E PS       LSR        RV  LT+   D     IR     IED     Q
Sbjct: 138 FIGATTENPSFELNNALLSR-------ARVYKLTSLNTDDIATVIRQ---AIED----KQ 183

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
           RG         D     +A    G  R++   L  + D AE
Sbjct: 184 RGLGDVPAHFADNVLDRLAELVNGDARMSLNYLELLYDMAE 224


>gi|11499642|ref|NP_070884.1| replication factor C small subunit [Archaeoglobus fulgidus DSM
          4304]
 gi|42559325|sp|O28219|RFCS_ARCFU RecName: Full=Replication factor C small subunit; Short=RFC small
          subunit; AltName: Full=Clamp loader small subunit;
          AltName: Full=afRFC small subunit; Short=afRFCsm
 gi|110590966|pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
 gi|110590967|pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
 gi|110590968|pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
 gi|110590969|pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
 gi|110590970|pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
 gi|110590971|pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
 gi|110590972|pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
 gi|110590973|pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
 gi|110590974|pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
 gi|2648471|gb|AAB89191.1| activator 1, replication factor C, 35 KD subunit [Archaeoglobus
          fulgidus DSM 4304]
          Length = 319

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 38/68 (55%), Gaps = 6/68 (8%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          +   RPRTL+E  GQ E    LK ++E        + H+LF GPPG GKT  A  +AR+L
Sbjct: 8  VEKYRPRTLDEVVGQDEVIQRLKGYVERKN-----IPHLLFSGPPGTGKTATAIALARDL 62

Query: 79 -GVNFRST 85
           G N+R  
Sbjct: 63 FGENWRDN 70


>gi|21911250|ref|NP_665518.1| recombination factor protein RarA [Streptococcus pyogenes MGAS315]
 gi|28896626|ref|NP_802976.1| recombination factor protein RarA [Streptococcus pyogenes SSI-1]
 gi|21905463|gb|AAM80321.1| putative chromosome segregation helicase [Streptococcus pyogenes
           MGAS315]
 gi|28811880|dbj|BAC64809.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1]
          Length = 422

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+T+ E  GQ       K+     +A    L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPKTISEVIGQKHLVGQGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTKYA 66

Query: 82  FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +  + +K       + A     L    VL +DEIHRL    ++ L P +E+  + +
Sbjct: 67  FRTFNATIDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLENGTI-I 121

Query: 137 MVG 139
           M+G
Sbjct: 122 MIG 124


>gi|330719421|ref|ZP_08314021.1| recombination factor protein RarA [Leuconostoc fallax KCTC 3537]
          Length = 428

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 60/132 (45%), Gaps = 6/132 (4%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ +E   GQ       K+     +A    L  ++  GPPG GKT++A  +A      
Sbjct: 10  MRPKKIEHIVGQQHLVGKNKIIWRMVQAHR--LSSMILYGPPGTGKTSIASAIAGSSKYA 67

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR  +    +K    + A    +    VL +DEIHRL    ++ L P +E   + L+   
Sbjct: 68  FRVLNAATDSKKDLQIVAEEAKMSGSVVLLLDEIHRLDKTKQDFLLPHLESGNIILI--- 124

Query: 141 GPSARSVKINLS 152
           G +  +  IN++
Sbjct: 125 GATTENPYINVT 136


>gi|91226056|ref|ZP_01260983.1| hypothetical protein V12G01_20316 [Vibrio alginolyticus 12G01]
 gi|91189497|gb|EAS75774.1| hypothetical protein V12G01_20316 [Vibrio alginolyticus 12G01]
          Length = 449

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 64/147 (43%), Gaps = 9/147 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP T+E++ GQ       K    A +A    +  ++  GPPG GKTTLA+V A      
Sbjct: 21  MRPETIEQYIGQQHILGPGKPLRRALEAGH--IHSMILWGPPGTGKTTLAEVAANYANAE 78

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-----RDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
               S          AA+    E+     R +LF+DE+HR +   ++   P +ED  +  
Sbjct: 79  VERVSAVTSGVKEIRAAIEKARENKMAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVTF 138

Query: 137 M--VGEGPSARSVKINLSRFTLIAATT 161
           +    E PS       LSR  +   T+
Sbjct: 139 IGATTENPSFELNNALLSRARVYKLTS 165


>gi|258621724|ref|ZP_05716755.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|258585955|gb|EEW10673.1| conserved hypothetical protein [Vibrio mimicus VM573]
          Length = 449

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 11/148 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+T+E++ GQ       K    A +A    +  ++  GPPG GKTTLA+V A      
Sbjct: 21  MRPQTVEQYIGQQHILGPGKPLRRALEA--GHIHSMILWGPPGTGKTTLAEVAANYANAE 78

Query: 82  FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
               S  V +   ++ A +    +      R +LF+DE+HR +   ++   P +ED  + 
Sbjct: 79  VERVSA-VTSGVKEIRAAIEKARENKLSGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVT 137

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATT 161
            +    E PS       LSR  +   T+
Sbjct: 138 FIGATTENPSFELNNALLSRARVYKLTS 165


>gi|148256359|ref|YP_001240944.1| recombination factor protein RarA [Bradyrhizobium sp. BTAi1]
 gi|146408532|gb|ABQ37038.1| Recombination protein MgsA [Bradyrhizobium sp. BTAi1]
          Length = 444

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 10/135 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP  L +  GQ              + R   L  ++F GPPG GKTT+A+++A    ++
Sbjct: 31  LRPHKLSDVVGQDHILGPDGALTRMLETRT--LGSLIFWGPPGTGKTTVARLLADATELH 88

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F   S  V +   DL  +      R       +LF+DE+HR +   ++   P MED  + 
Sbjct: 89  FEQISA-VFSGVADLKKVFDAARARRETGQGTLLFVDEVHRFNRAQQDSFLPVMEDGTV- 146

Query: 136 LMVGEGPSARSVKIN 150
           ++VG      S ++N
Sbjct: 147 VLVGATTENPSFELN 161


>gi|331703454|ref|YP_004400141.1| ATPase [Mycoplasma mycoides subsp. capri LC str. 95010]
 gi|328802009|emb|CBW54163.1| ATPase, AAA family [Mycoplasma mycoides subsp. capri LC str. 95010]
          Length = 411

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 15/117 (12%)

Query: 21  LLRPRTLEEFTGQVEACS-----NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           LLRP+T ++  GQ E        N  +  +   +       ++F GP G+GKT+ A  +A
Sbjct: 8   LLRPKTTKDIIGQTEILKPNGLINKMILNDYCTS-------LIFYGPSGVGKTSFAISLA 60

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTN--LEDRDVLFIDEIHRLSIIVEEILYPAME 130
            +L +++   +     K   L +++    L+DR +L IDEIHRL+   ++IL   ME
Sbjct: 61  NDLKIDYEIFNASY-DKKEKLTSIIKKALLQDRFILIIDEIHRLNKDKQDILLEYME 116


>gi|253688108|ref|YP_003017298.1| AAA ATPase central domain protein [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251754686|gb|ACT12762.1| AAA ATPase central domain protein [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 447

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 72/152 (47%), Gaps = 17/152 (11%)

Query: 22  LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP TL ++ GQ     A   L   IEA +     L  ++  GPPG GKTTLA+++    
Sbjct: 20  MRPATLAQYIGQQHLLGAGKPLPRAIEAGQ-----LHSMILWGPPGTGKTTLAELIGHYG 74

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             +       TSG   I +A + A    N   R +LF+DE+HR +   ++   P +ED  
Sbjct: 75  QADVERISAVTSGIKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134

Query: 134 LDLM--VGEGPS--ARSVKINLSRFTLIAATT 161
           +  +    E PS    S  ++ +R  L+ A T
Sbjct: 135 ITFIGATTENPSFELNSALLSRARVYLLKALT 166


>gi|187778844|ref|ZP_02995317.1| hypothetical protein CLOSPO_02439 [Clostridium sporogenes ATCC
           15579]
 gi|187772469|gb|EDU36271.1| hypothetical protein CLOSPO_02439 [Clostridium sporogenes ATCC
           15579]
          Length = 415

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 69/143 (48%), Gaps = 8/143 (5%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           L+RP  LE+F GQ    S  K      K ++  + + +F GPPG GKTTLA ++A  +  
Sbjct: 7   LMRPNKLEDFVGQKHILSENKPLYNLMKNKS--ICNSIFYGPPGTGKTTLANIMANYVDK 64

Query: 81  NFR--STSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
            F   + +   I    ++ + + +L +    VL+IDE+   +   ++ L   +ED ++ L
Sbjct: 65  KFYRLNATTASIKDIQEITSSINSLLNYSGVVLYIDELQHFTKKQQQALLEFIEDGRVVL 124

Query: 137 MVG--EGPSARSVKINLSRFTLI 157
           +    E P     K  LSR  + 
Sbjct: 125 IASTTENPYFVIHKAILSRCNIF 147


>gi|270159557|ref|ZP_06188213.1| conserved hypothetical protein [Legionella longbeachae D-4968]
 gi|289165647|ref|YP_003455785.1| recombination protein [Legionella longbeachae NSW150]
 gi|269987896|gb|EEZ94151.1| conserved hypothetical protein [Legionella longbeachae D-4968]
 gi|288858820|emb|CBJ12734.1| recombination protein [Legionella longbeachae NSW150]
          Length = 431

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 58/119 (48%), Gaps = 15/119 (12%)

Query: 21  LLRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           LLRP+ L E  GQ   +    +LK+     K  +     ++  GPPG+GKTT+A+V A  
Sbjct: 15  LLRPKNLNEVIGQGHLLGEGKSLKLCFAGKKPHS-----MILWGPPGVGKTTIARVAAET 69

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130
               + + S  V +   D+ A +   ++        +LFIDEIHR +   ++ L P  E
Sbjct: 70  FDCEWIALSA-VFSGVKDIRAAIEKAQENLIYGKHTLLFIDEIHRFNKAQQDALLPYTE 127


>gi|260583889|ref|ZP_05851637.1| ATPase, AAA family [Granulicatella elegans ATCC 700633]
 gi|260158515|gb|EEW93583.1| ATPase, AAA family [Granulicatella elegans ATCC 700633]
          Length = 424

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 65/131 (49%), Gaps = 6/131 (4%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  LEE  GQ    +  K+   A    A+ L  ++  GPPG+GKT++A  +A      
Sbjct: 14  MRPTCLEEIVGQQHLVAPGKII--ARMIAAKQLSSMILYGPPGIGKTSIASAIAGTTKYA 71

Query: 82  FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
           FR+ +     K  +L  ++    +    +L +DEIHRL    ++ L P +E+ ++ +++G
Sbjct: 72  FRTLNAATDTKK-ELQIVIEEAKMSGTVILLLDEIHRLDKPKQDFLLPHLENGRV-ILIG 129

Query: 140 EGPSARSVKIN 150
                  + IN
Sbjct: 130 ATTENPYIAIN 140


>gi|146341536|ref|YP_001206584.1| recombination factor protein RarA [Bradyrhizobium sp. ORS278]
 gi|146194342|emb|CAL78366.1| putative polynucleotide enzyme with nucleotide triphosphate
           hydrolase domain [Bradyrhizobium sp. ORS278]
          Length = 444

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 10/135 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP  L +  GQ              + R   L  ++F GPPG GKTT+A+++A    ++
Sbjct: 31  LRPHKLSDVVGQDHILGPDGALTRMLETRT--LGSLIFWGPPGTGKTTVARLLADATELH 88

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F   S  V +   DL  +      R       +LF+DE+HR +   ++   P MED  + 
Sbjct: 89  FEQISA-VFSGVADLKKVFDAARARRETGQGTLLFVDEVHRFNRAQQDSFLPVMEDGTV- 146

Query: 136 LMVGEGPSARSVKIN 150
           ++VG      S ++N
Sbjct: 147 VLVGATTENPSFELN 161


>gi|148910747|gb|ABR18440.1| unknown [Picea sitchensis]
          Length = 721

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 6/99 (6%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFI 111
           ++F GPPG GKTTLA+ +A  +   F S S        + +  + A  +  +  R + F+
Sbjct: 244 IVFWGPPGTGKTTLARAIANSVSYRFSSVSAVTSGLKEVREVLEEAKRMKKMGQRTLFFV 303

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN 150
           DE+HR +   ++   P +ED  + + +G      S ++N
Sbjct: 304 DEVHRFNKAQQDAFLPVVEDGSI-VFIGATTENPSFEVN 341


>gi|171463748|ref|YP_001797861.1| recombination factor protein RarA [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171193286|gb|ACB44247.1| recombination factor protein RarA [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 123

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 55/108 (50%), Gaps = 12/108 (11%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH-VLFVGPPGLGKTTLAQVVARELGV 80
           LRP+T+EE  GQ    +N K       A A    H ++  GPPG+GKTTLA++ A+    
Sbjct: 16  LRPKTIEEVIGQAHLLTNEKPL---NLAFASGKPHSIILWGPPGVGKTTLARLSAKAFDR 72

Query: 81  NFRSTSGPVIAKAGDL-------AALLTNLEDRDVLFIDEIHRLSIIV 121
            F + S  V+A   ++          +     + +LF+DEIHR + I+
Sbjct: 73  EFIAISA-VLAGVKEIRESIEQAQQNMAQYSKQTILFVDEIHRFNKIL 119


>gi|110590957|pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
 gi|110590958|pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
 gi|110590959|pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
 gi|110590960|pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
          Length = 226

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 38/68 (55%), Gaps = 6/68 (8%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          +   RPRTL+E  GQ E    LK ++E        + H+LF GPPG GKT  A  +AR+L
Sbjct: 8  VEKYRPRTLDEVVGQDEVIQRLKGYVERKN-----IPHLLFSGPPGTGKTATAIALARDL 62

Query: 79 -GVNFRST 85
           G N+R  
Sbjct: 63 FGENWRDN 70


>gi|73542280|ref|YP_296800.1| recombination factor protein RarA [Ralstonia eutropha JMP134]
 gi|72119693|gb|AAZ61956.1| Recombination protein MgsA [Ralstonia eutropha JMP134]
          Length = 446

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 63/132 (47%), Gaps = 15/132 (11%)

Query: 22  LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPR ++E  GQ     A   L+V  E+ +  +     ++  GPPG+GKTTLA+++A   
Sbjct: 21  LRPRNIDEVIGQQHLLGAGKPLRVAFESGEPHS-----MILWGPPGVGKTTLARLMADAF 75

Query: 79  GVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED-- 131
              F + S  +     I +A D A        R ++F+DE+HR +   ++   P +E   
Sbjct: 76  DAEFIALSAVLSGVKDIREAVDRAEQFRAHGRRTLVFVDEVHRFNKSQQDAFLPHVESGL 135

Query: 132 FQLDLMVGEGPS 143
           F       E PS
Sbjct: 136 FTFIGATTENPS 147


>gi|261821269|ref|YP_003259375.1| recombination factor protein RarA [Pectobacterium wasabiae WPP163]
 gi|261605282|gb|ACX87768.1| AAA ATPase central domain protein [Pectobacterium wasabiae WPP163]
          Length = 447

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 72/152 (47%), Gaps = 17/152 (11%)

Query: 22  LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP TL ++ GQ     A   L   IEA +     L  ++  GPPG GKTTLA+++    
Sbjct: 20  MRPATLAQYIGQQHLLGAGKPLPRAIEAGQ-----LHSMILWGPPGTGKTTLAELIGHYG 74

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             +       TSG   I +A + A    N   R +LF+DE+HR +   ++   P +ED  
Sbjct: 75  QADVERISAVTSGIKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134

Query: 134 LDLM--VGEGPS--ARSVKINLSRFTLIAATT 161
           +  +    E PS    S  ++ +R  L+ A T
Sbjct: 135 ITFIGATTENPSFELNSALLSRARVYLLKALT 166


>gi|300172649|ref|YP_003771814.1| chromosome segregation helicase [Leuconostoc gasicomitatum LMG
           18811]
 gi|299887027|emb|CBL90995.1| Chromosome segregation helicase (Putative) [Leuconostoc
           gasicomitatum LMG 18811]
          Length = 428

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 3/110 (2%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  +EE  GQ     + K+      A+   L  ++  GPPG GKT++A  +A      
Sbjct: 9   MRPTQIEEIVGQPHLVGSGKIIRRMVDAKR--LSSMILYGPPGTGKTSIASAIAGSSKYA 66

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           FR  +    ++    + A    +    VL +DEIHRL+ I ++ L P +E
Sbjct: 67  FRMLNAATDSQKDLQIVAEEAKMSGTVVLLLDEIHRLNKIKQDFLLPHLE 116


>gi|227328170|ref|ZP_03832194.1| recombination factor protein RarA [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 447

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 72/152 (47%), Gaps = 17/152 (11%)

Query: 22  LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP TL ++ GQ     A   L   IEA +     L  ++  GPPG GKTTLA+++    
Sbjct: 20  MRPATLAQYIGQQHLLGAGKPLPRAIEAGQ-----LHSMILWGPPGTGKTTLAELIGHYG 74

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             +       TSG   I +A + A    N   R +LF+DE+HR +   ++   P +ED  
Sbjct: 75  QADVERISAVTSGIKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134

Query: 134 LDLM--VGEGPS--ARSVKINLSRFTLIAATT 161
           +  +    E PS    S  ++ +R  L+ A T
Sbjct: 135 ITFIGATTENPSFELNSALLSRARVYLLKALT 166


>gi|67480321|ref|XP_655510.1| AAA family ATPase [Entamoeba histolytica HM-1:IMSS]
 gi|56472656|gb|EAL50122.1| AAA family ATPase, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 482

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 78/157 (49%), Gaps = 18/157 (11%)

Query: 16  DADISLL------RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           D DIS +      RP+ LE+  GQ  A      F   +    ++L   +  GPPG GKTT
Sbjct: 23  DKDISYIPLAERQRPKRLEDIIGQESAIGIGTPF--NSMILNDSLQSTILFGPPGSGKTT 80

Query: 70  LAQVV---ARELGVNFRS--TSGPVIAKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVEE 123
           +A+++   ++   V   S  TS   +    + A      E +D +LF+DEIH L+ + ++
Sbjct: 81  IARIIKNTSKSFFVQISSVTTSKEELKNVIEQAKERKKREKKDTILFVDEIHTLNKLQQD 140

Query: 124 ILYPAMEDFQLDLMVG---EGPSARSVKINLSRFTLI 157
           I  PA+E+  + ++VG   E PS +     +SR  L+
Sbjct: 141 IFLPAIENGSI-ILVGATTENPSFQLNNALMSRCNLV 176


>gi|227112002|ref|ZP_03825658.1| recombination factor protein RarA [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 447

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 72/152 (47%), Gaps = 17/152 (11%)

Query: 22  LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP TL ++ GQ     A   L   IEA +     L  ++  GPPG GKTTLA+++    
Sbjct: 20  MRPATLAQYIGQQHLLGAGKPLPRAIEAGQ-----LHSMILWGPPGTGKTTLAELIGHYG 74

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             +       TSG   I +A + A    N   R +LF+DE+HR +   ++   P +ED  
Sbjct: 75  QADVERISAVTSGIKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134

Query: 134 LDLM--VGEGPS--ARSVKINLSRFTLIAATT 161
           +  +    E PS    S  ++ +R  L+ A T
Sbjct: 135 ITFIGATTENPSFELNSALLSRARVYLLKALT 166


>gi|67538894|ref|XP_663221.1| hypothetical protein AN5617.2 [Aspergillus nidulans FGSC A4]
 gi|40743520|gb|EAA62710.1| hypothetical protein AN5617.2 [Aspergillus nidulans FGSC A4]
 gi|259484914|tpe|CBF81541.1| TPA: DNA replication ATPase (Eurofung) [Aspergillus nidulans FGSC
           A4]
          Length = 528

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 72/148 (48%), Gaps = 18/148 (12%)

Query: 22  LRPRTLEEFTGQ--VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +RPRTL+E  GQ  V     L+  IE  +     +  ++  G PG GKTT+A+V+A  +G
Sbjct: 121 MRPRTLDEVCGQELVGPTGVLRGLIEEDR-----VPSMILWGGPGTGKTTIARVIASMVG 175

Query: 80  VNF----RSTSGPVIAKA--GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             F     +++G    K    D  + L     + ++F DEIHR S   +++    +E  Q
Sbjct: 176 SRFVEINSTSTGVAECKKIFADAKSELGLTGRKTIIFCDEIHRFSKSQQDVFLGPVESGQ 235

Query: 134 LDLM--VGEGPSARSVKINLSR---FTL 156
           + L+    E PS +     LSR   FTL
Sbjct: 236 VTLIGATTENPSFKVQNALLSRCRTFTL 263


>gi|269960797|ref|ZP_06175168.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269834461|gb|EEZ88549.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 449

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 64/147 (43%), Gaps = 9/147 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP T+E++ GQ       K    A +A    +  ++  GPPG GKTTLA+V A      
Sbjct: 21  MRPETIEQYIGQQHILGPGKPLRRALEAGH--IHSMILWGPPGTGKTTLAEVAANYANAE 78

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-----RDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
               S          AA+    E+     R +LF+DE+HR +   ++   P +ED  +  
Sbjct: 79  VERVSAVTSGVKEIRAAIEKARENKMAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVTF 138

Query: 137 M--VGEGPSARSVKINLSRFTLIAATT 161
           +    E PS       LSR  +   T+
Sbjct: 139 IGATTENPSFELNNALLSRARVYKLTS 165


>gi|261367566|ref|ZP_05980449.1| ATPase, AAA family [Subdoligranulum variabile DSM 15176]
 gi|282570353|gb|EFB75888.1| ATPase, AAA family [Subdoligranulum variabile DSM 15176]
          Length = 420

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 65/263 (24%), Positives = 110/263 (41%), Gaps = 46/263 (17%)

Query: 22  LRPRTLEEFTGQVEACSNLKVF---IEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPRTL+E  GQ       +VF   +E+ +     + +++F GP G+GKTT+A ++A   
Sbjct: 8   LRPRTLDEVCGQQHLLGKNQVFRRTVESGR-----IPNMIFYGPSGVGKTTVASIIAAGS 62

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNL-----EDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           G+     +G   A   D+ ++L ++         +L++DEI   +   ++ L   +E   
Sbjct: 63  GMQLHKLNG-TTASTSDIKSVLADIGTLGASGGILLYLDEIQYFNKRQQQSLLECVEQ-- 119

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTR--VGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
                                TLIA+TT      + N L  R  +         ED++  
Sbjct: 120 ------------------GTVTLIASTTENPYFYVYNALLSRCTV-FEFKSLTAEDIRKG 160

Query: 192 VQRGAKLTG------LAVTDEAACEIAMRSRGTPRIA-GRLLRRVRDFAEVAHAKTITRE 244
           +Q  A   G      + + D+A   +A  + G  R A G L   V         +T+T +
Sbjct: 161 IQNAAARLGAEDKVPILIPDDALDYLAQSAGGDMRKALGNLEFAVTAAPAENGQRTVTLD 220

Query: 245 IADAALLRLAI--DKMGFDQLDL 265
           +      R A+  DK+G D  D+
Sbjct: 221 MVQQVAARTAMRYDKLGDDHYDI 243


>gi|126667375|ref|ZP_01738347.1| hypothetical protein MELB17_13951 [Marinobacter sp. ELB17]
 gi|126628131|gb|EAZ98756.1| hypothetical protein MELB17_13951 [Marinobacter sp. ELB17]
          Length = 445

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 118/281 (41%), Gaps = 55/281 (19%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP  L ++ GQ   V     L+  +E  +     L  ++  GPPG+GKTT AQ++A   
Sbjct: 19  MRPAKLADYVGQPHLVGPGKPLRRAVEQGQ-----LHSMILWGPPGVGKTTFAQLLANVS 73

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLSIIVEEILYPAMED 131
            + F + S  V++   D+ A +     R        +LF+DE+HR +   ++   P +ED
Sbjct: 74  DLAFENVSA-VLSGVKDIRAAVERARARKQGSGQDTLLFVDEVHRFNKSQQDAFLPHIED 132

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
               + VG      S ++N    + + + TRV +L N               E +D++ +
Sbjct: 133 GTF-IFVGATTENPSFELN----SALLSRTRVYVLKN--------------LEDDDIQRL 173

Query: 192 VQRGAKLTG-----LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           + R           L V ++    +A  + G  R A  +L    D AE            
Sbjct: 174 LIRALSAEEGFGGRLRVAEDVLAMMASAASGDARRALNILEVAADLAE-----------P 222

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISA 287
           DA      +D +  DQL+L   T + R   GG V  + ISA
Sbjct: 223 DAD----GVDSVSEDQLELVMQTSLRRFDKGGDVFYDQISA 259


>gi|24213879|ref|NP_711360.1| recombination factor protein RarA [Leptospira interrogans serovar
           Lai str. 56601]
 gi|45658352|ref|YP_002438.1| recombination factor protein RarA [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|24194725|gb|AAN48378.1| recombination factor protein RarA [Leptospira interrogans serovar
           Lai str. 56601]
 gi|45601595|gb|AAS71075.1| ATPase [Leptospira interrogans serovar Copenhageni str. Fiocruz
           L1-130]
          Length = 423

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 65/140 (46%), Gaps = 13/140 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP + EE  GQ +A   L        A       ++  GPPG GK+TLA ++ R+  + 
Sbjct: 17  IRPSSFEEVIGQSKATKQL--------ANYRFPVSIILYGPPGTGKSTLAGILCRKWNLP 68

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137
           F   +  V     ++  LL   E     +LF+DEIHR S   ++ L   +E   L L+  
Sbjct: 69  FVEYNA-VSTGVAEIKKLLERAEREGTILLFLDEIHRFSASQQDSLLKGVETGHLILIGA 127

Query: 138 VGEGPSARSVKINLSRFTLI 157
             E P+ R  +  LSR  ++
Sbjct: 128 TTENPAFRITRPLLSRCQIL 147


>gi|55981853|ref|YP_145150.1| recombination factor protein RarA [Thermus thermophilus HB8]
 gi|55773266|dbj|BAD71707.1| probable ATPase [Thermus thermophilus HB8]
          Length = 421

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 62/121 (51%), Gaps = 11/121 (9%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPR+L+E  GQ         L+  +EA +     L  ++  GPPG GKTTLA+++A  +
Sbjct: 11  LRPRSLDEVLGQPHLTGPQGLLRRMLEAGR-----LSSMVLFGPPGTGKTTLARLLAEGV 65

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           G  F   S  V A   ++   +     +   VLF+DE+HR +   ++ L P +E   L L
Sbjct: 66  GRPFLRLSA-VEAGLKEVRQAVEEARAKGGLVLFLDEVHRFNKAQQDALLPHLESGLLTL 124

Query: 137 M 137
           +
Sbjct: 125 I 125


>gi|152997260|ref|YP_001342095.1| recombination factor protein RarA [Marinomonas sp. MWYL1]
 gi|150838184|gb|ABR72160.1| AAA ATPase central domain protein [Marinomonas sp. MWYL1]
          Length = 455

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 14/119 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP +L+++ GQ   V     L+  +E     +      +  GPPG+GKTT AQ+++  L
Sbjct: 20  MRPASLDDYIGQSHLVGPGKPLRRMVETGHCHS-----FILWGPPGVGKTTFAQLLSHAL 74

Query: 79  GVNFRSTSGPV-----IAKAGDLAALLTNLE-DRDVLFIDEIHRLSIIVEEILYPAMED 131
              F   S  +     I  A D A  L  +   + VLF+DE+HR +   ++   P +ED
Sbjct: 75  DAQFIEISAVMSGVKEIRAAVDQAKQLRAMNGTQTVLFVDEVHRFNKSQQDAFLPFIED 133


>gi|46199825|ref|YP_005492.1| recombination factor protein RarA [Thermus thermophilus HB27]
 gi|46197452|gb|AAS81865.1| ATPase [Thermus thermophilus HB27]
          Length = 421

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 62/121 (51%), Gaps = 11/121 (9%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPR+L+E  GQ         L+  +EA +     L  ++  GPPG GKTTLA+++A  +
Sbjct: 11  LRPRSLDEVLGQPHLTGPKGLLRRMLEAGR-----LSSMVLFGPPGTGKTTLARLLAEGV 65

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           G  F   S  V A   ++   +     +   VLF+DE+HR +   ++ L P +E   L L
Sbjct: 66  GRPFLRLSA-VEAGLKEVRQAVEEARAKGGLVLFLDEVHRFNKAQQDALLPHLESGLLTL 124

Query: 137 M 137
           +
Sbjct: 125 I 125


>gi|307299313|ref|ZP_07579114.1| AAA ATPase central domain protein [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306915109|gb|EFN45495.1| AAA ATPase central domain protein [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 437

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 97/216 (44%), Gaps = 30/216 (13%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG-- 79
           LRP+  ++  GQ E  +  K  I  A    +    +L+ GPPG GKTT+ +++  +LG  
Sbjct: 15  LRPKEFDDIVGQ-EHLTGKKGIIRGAVDSGKLFSMILY-GPPGTGKTTIGEIIRSKLGND 72

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
            +F   S  +   A DL     + E       + VLF+DEIHRL+   +++  P  E   
Sbjct: 73  YHFEFFSASLQGTA-DLKKHFAHGERLKRVGQQLVLFVDEIHRLNKSQQDVFLPVTEK-G 130

Query: 134 LDLMVGEGPSARSVKIN---LSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           + +++G      S ++N   LSR  L+        +   L+D   I   LN    +DL  
Sbjct: 131 IIILIGATTENPSFEVNPALLSRCRLV--------ILKGLKDS-DISALLNKALEKDLIL 181

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
                 K +G+ V  E    IA  S G  RIA  LL
Sbjct: 182 ------KESGVTVDGEVIEVIAQSSGGDARIALNLL 211


>gi|162447688|ref|YP_001620820.1| Holliday junction DNA helicase-like ATPase [Acholeplasma laidlawii
           PG-8A]
 gi|161985795|gb|ABX81444.1| Holliday junction DNA helicase-like ATPase [Acholeplasma laidlawii
           PG-8A]
          Length = 412

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 91/218 (41%), Gaps = 41/218 (18%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE-- 77
           S +RP+  +E  GQ    S   V  +  + + + L  +L+ GPPG GKTT+A++ + +  
Sbjct: 6   SRMRPKNFDEVYGQDHLLSKHGVLTKMIEKK-KYLSFILY-GPPGTGKTTIAKLFSDKSM 63

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFI-DEIHRLSIIVEEILYPAMEDFQLDL 136
           L   F + S    AK  D+  +       DVL I DEIHR+   +++ L P +E      
Sbjct: 64  LDTYFFNASTDNKAKLKDILDMTAY---HDVLIIVDEIHRMKTDIQDYLLPFLE------ 114

Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEIEDLKTIVQRG 195
                 S +++ I L+               NP Q     I  R + YEI+ L       
Sbjct: 115 ------SGKAIMIGLTTL-------------NPYQSINMAIRSRCHLYEIKALSDKDIEA 155

Query: 196 AKLTGLA-------VTDEAACEIAMRSRGTPRIAGRLL 226
           A L  +        +TD+A   I   S    R A  LL
Sbjct: 156 AILNAIQYLDHDIHLTDDALAAIIRASNSEIRSALNLL 193


>gi|156974088|ref|YP_001444995.1| recombination factor protein RarA [Vibrio harveyi ATCC BAA-1116]
 gi|156525682|gb|ABU70768.1| hypothetical protein VIBHAR_01799 [Vibrio harveyi ATCC BAA-1116]
          Length = 451

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 64/147 (43%), Gaps = 9/147 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP T+E++ GQ       K    A +A    +  ++  GPPG GKTTLA+V A      
Sbjct: 23  MRPETIEQYIGQQHILGPGKPLRRALEAGH--IHSMILWGPPGTGKTTLAEVAANYANAE 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-----RDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
               S          AA+    E+     R +LF+DE+HR +   ++   P +ED  +  
Sbjct: 81  VERVSAVTSGVKEIRAAIEKARENKMAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVTF 140

Query: 137 M--VGEGPSARSVKINLSRFTLIAATT 161
           +    E PS       LSR  +   T+
Sbjct: 141 IGATTENPSFELNNALLSRARVYKLTS 167


>gi|126459198|ref|YP_001055476.1| replication factor C small subunit [Pyrobaculum calidifontis JCM
          11548]
 gi|126248919|gb|ABO08010.1| replication factor C small subunit [Pyrobaculum calidifontis JCM
          11548]
          Length = 324

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/56 (48%), Positives = 35/56 (62%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RPR+ EE     E  + L+ F++A       L H+LF GPPG GKTT+A V+AREL
Sbjct: 11 RPRSFEEVVDLEEVKARLREFVKAGN-----LPHLLFYGPPGTGKTTMALVLAREL 61


>gi|293396838|ref|ZP_06641112.1| replication-associated recombination protein A [Serratia odorifera
           DSM 4582]
 gi|291420309|gb|EFE93564.1| replication-associated recombination protein A [Serratia odorifera
           DSM 4582]
          Length = 428

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 72/149 (48%), Gaps = 11/149 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP TL ++ GQ    +  K    A +A    L  ++  GPPG GKTTLA+++ R    +
Sbjct: 1   MRPTTLAQYIGQQHLLAPGKPLPRAIEA--GQLHSMILWGPPGTGKTTLAELIGRYGQAD 58

Query: 82  FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
                  TSG   I +A + A    +   R +LF+DE+HR +   ++   P +ED  +  
Sbjct: 59  VERISAVTSGIKEIREAIERARQNRDAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 118

Query: 137 M--VGEGPS--ARSVKINLSRFTLIAATT 161
           +    E PS    S  ++ +R  L+ A T
Sbjct: 119 IGATTENPSFELNSALLSRARVYLLKALT 147


>gi|260102589|ref|ZP_05752826.1| AAA family ATPase [Lactobacillus helveticus DSM 20075]
 gi|260083616|gb|EEW67736.1| AAA family ATPase [Lactobacillus helveticus DSM 20075]
          Length = 437

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 3/117 (2%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L++  GQ       K+     +AR   L  ++  GPPG+GKT++A  +A      
Sbjct: 8   MRPQNLDQVVGQQHLIGPGKIIRRMVEARL--LSSMILYGPPGIGKTSIASAIAGSTKYA 65

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           FR  +     K      A    +    +L +DEIHRL    ++ L P +E  Q+ L+
Sbjct: 66  FRKLNAATDGKKQLQQVAAEGKMSGTVILLLDEIHRLDKTKQDFLLPLLESGQIILI 122


>gi|119476161|ref|ZP_01616513.1| hypothetical protein GP2143_06210 [marine gamma proteobacterium
           HTCC2143]
 gi|119450788|gb|EAW32022.1| hypothetical protein GP2143_06210 [marine gamma proteobacterium
           HTCC2143]
          Length = 441

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 84/182 (46%), Gaps = 28/182 (15%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR L ++ GQ       +   EA    +  L  ++  GPPG+GKT+LA+++A     +
Sbjct: 20  MRPRILVDYIGQHHLLGEGRPLREAI--LSGQLHSMILWGPPGVGKTSLARLIADLCDAH 77

Query: 82  FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F + S  V+A   D+ A +           + +LFIDE+HR +   ++   P +ED  + 
Sbjct: 78  FITLSA-VLAGVKDIRASVEEARQYQANGRQTILFIDEVHRFNKSQQDAFLPFVEDGTV- 135

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           + +G      S ++N      + + TRV               +L   E+ED++ I+ R 
Sbjct: 136 IFIGATTENPSFELN----NALLSRTRV--------------YKLRSLELEDIEKIIDRA 177

Query: 196 AK 197
            +
Sbjct: 178 CQ 179


>gi|328468694|gb|EGF39679.1| recombination factor protein RarA [Lactobacillus helveticus MTCC
           5463]
          Length = 437

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 3/117 (2%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L++  GQ       K+     +AR   L  ++  GPPG+GKT++A  +A      
Sbjct: 8   MRPQNLDQVVGQQHLIGPGKIIRRMVEARL--LSSMILYGPPGIGKTSIASAIAGSTKYA 65

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           FR  +     K      A    +    +L +DEIHRL    ++ L P +E  Q+ L+
Sbjct: 66  FRKLNAATDGKKQLQQVAAEGKMSGTVILLLDEIHRLDKTKQDFLLPLLESGQIILI 122


>gi|161507285|ref|YP_001577239.1| recombination factor protein RarA [Lactobacillus helveticus DPC
           4571]
 gi|160348274|gb|ABX26948.1| Chromosomal segregation helicase [Lactobacillus helveticus DPC
           4571]
          Length = 437

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 3/117 (2%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L++  GQ       K+     +AR   L  ++  GPPG+GKT++A  +A      
Sbjct: 8   MRPQNLDQVVGQQHLIGPGKIIRRMVEARL--LSSMILYGPPGIGKTSIASAIAGSTKYA 65

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           FR  +     K      A    +    +L +DEIHRL    ++ L P +E  Q+ L+
Sbjct: 66  FRKLNAATDGKKQLQQVAAEGKMSGTVILLLDEIHRLDKTKQDFLLPLLESGQIILI 122


>gi|163801973|ref|ZP_02195869.1| seryl-tRNA synthetase [Vibrio sp. AND4]
 gi|159174114|gb|EDP58922.1| seryl-tRNA synthetase [Vibrio sp. AND4]
          Length = 449

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 58/129 (44%), Gaps = 9/129 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP T+E++ GQ       K    A +A    +  ++  GPPG GKTTLA+V A      
Sbjct: 21  MRPETIEQYIGQQHILGPGKPLRRALEAGH--IHSMILWGPPGTGKTTLAEVAANYANAE 78

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-----RDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
               S          AA+    E+     R +LF+DE+HR +   ++   P +ED  +  
Sbjct: 79  VERVSAVTSGVKEIRAAIEKARENKMAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVTF 138

Query: 137 M--VGEGPS 143
           +    E PS
Sbjct: 139 IGATTENPS 147


>gi|25028305|ref|NP_738359.1| recombination factor protein RarA [Corynebacterium efficiens
           YS-314]
 gi|23493589|dbj|BAC18559.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
          Length = 452

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 64/135 (47%), Gaps = 21/135 (15%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRTL+E  GQ       +      +   EA   V+  GPPG GKTT+A +++   G  
Sbjct: 38  MRPRTLDEVVGQQHLLGPGRPLRRLIEGSGEA--SVILYGPPGTGKTTIASLISAATGDR 95

Query: 82  FRSTSG---------PVIAKAGDLAALLTNL--EDRDVLFIDEIHRLSIIVEEILYPAME 130
           F + S           VI +A       T+L    R VLFIDE+HR S   ++ L  A+E
Sbjct: 96  FVALSALSSGVKEVREVINRA------RTDLIHGARTVLFIDEVHRFSKTQQDALLAAVE 149

Query: 131 DFQLDLMVG--EGPS 143
           +  + L+    E PS
Sbjct: 150 NRTVLLVAATTENPS 164


>gi|260948804|ref|XP_002618699.1| hypothetical protein CLUG_02158 [Clavispora lusitaniae ATCC 42720]
 gi|238848571|gb|EEQ38035.1| hypothetical protein CLUG_02158 [Clavispora lusitaniae ATCC 42720]
          Length = 768

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 61/116 (52%), Gaps = 10/116 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+TL++F GQ E        +    A  +    +L+ G PG+GKT+LA+++A      
Sbjct: 228 LRPKTLDDFFGQ-EKLVGPNGILRNIMASQQIPSFILW-GVPGVGKTSLARIIASNSNHR 285

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAME 130
           +   SG   + A  L    +N ++       + +LF+DEIHR +  V+++L P +E
Sbjct: 286 YVELSGSE-SSAKKLKEAFSNAQNEQQLSGTKTILFLDEIHRFNKAVQDLLLPVIE 340


>gi|320156735|ref|YP_004189114.1| ATPase AAA family [Vibrio vulnificus MO6-24/O]
 gi|319932047|gb|ADV86911.1| ATPase AAA family [Vibrio vulnificus MO6-24/O]
          Length = 449

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 64/147 (43%), Gaps = 9/147 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP T+E++ GQ       K    A +A    +  ++  GPPG GKTTLA+V A      
Sbjct: 21  MRPETIEQYIGQQHILGPGKPLRRALEAGH--IHSMILWGPPGTGKTTLAEVAANYANAE 78

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-----RDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
               S          AA+    E+     R +LF+DE+HR +   ++   P +ED  +  
Sbjct: 79  VERVSAVTSGVKEIRAAIEKARENKMAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVTF 138

Query: 137 M--VGEGPSARSVKINLSRFTLIAATT 161
           +    E PS       LSR  +   T+
Sbjct: 139 IGATTENPSFELNNALLSRARVYKLTS 165


>gi|161501800|ref|NP_761751.2| recombination factor protein RarA [Vibrio vulnificus CMCP6]
 gi|319999484|gb|AAO11278.2| ATPase, AAA family [Vibrio vulnificus CMCP6]
          Length = 449

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 64/147 (43%), Gaps = 9/147 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP T+E++ GQ       K    A +A    +  ++  GPPG GKTTLA+V A      
Sbjct: 21  MRPETIEQYIGQQHILGPGKPLRRALEAGH--IHSMILWGPPGTGKTTLAEVAANYANAE 78

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-----RDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
               S          AA+    E+     R +LF+DE+HR +   ++   P +ED  +  
Sbjct: 79  VERVSAVTSGVKEIRAAIEKARENKMAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVTF 138

Query: 137 M--VGEGPSARSVKINLSRFTLIAATT 161
           +    E PS       LSR  +   T+
Sbjct: 139 IGATTENPSFELNNALLSRARVYKLTS 165


>gi|297568672|ref|YP_003690016.1| AAA ATPase central domain protein [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296924587|gb|ADH85397.1| AAA ATPase central domain protein [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 461

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 71/145 (48%), Gaps = 12/145 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  L++F GQ    ++ K+   A  +R   L  +L  GPPG GKTTLA+++A   G +
Sbjct: 26  MRPARLDDFVGQRHLLADDKLL--AGLSRHGYLPSLLLWGPPGSGKTTLARILAGGSGAD 83

Query: 82  FRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F   S  V++   ++  ++              VLF+DEIHR +   ++   P +E   +
Sbjct: 84  FVFFSA-VLSGVKEIREIVERSRRIRAESGRGSVLFVDEIHRFNKSQQDAFLPHVEAGLI 142

Query: 135 DLM--VGEGPSARSVKINLSRFTLI 157
            L+    E PS   +   LSR  +I
Sbjct: 143 TLIGATTENPSFHVIAPLLSRCRVI 167


>gi|149186572|ref|ZP_01864884.1| ATPase [Erythrobacter sp. SD-21]
 gi|148829799|gb|EDL48238.1| ATPase [Erythrobacter sp. SD-21]
          Length = 438

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 66/132 (50%), Gaps = 16/132 (12%)

Query: 9   SRNVSQEDADIS-LLRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           +++  +EDA ++  LRP +L E  GQ     A   +   + A K     L  ++  GPPG
Sbjct: 14  TKDGVREDAPLADRLRPASLGEVIGQDHLTGAEGAIGRMVAAGK-----LSSMILWGPPG 68

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLS 118
            GKTT+A+++A  +G+ F S S  V +   DL       +       R +LF+DEIHR +
Sbjct: 69  TGKTTIARLLADSVGMRFESVSA-VFSGVADLKKAFAAADKAAEAGQRTLLFVDEIHRFN 127

Query: 119 IIVEEILYPAME 130
              ++   P +E
Sbjct: 128 RAQQDGFLPFVE 139


>gi|259507363|ref|ZP_05750263.1| AAA family ATPase [Corynebacterium efficiens YS-314]
 gi|259165074|gb|EEW49628.1| AAA family ATPase [Corynebacterium efficiens YS-314]
          Length = 449

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 64/135 (47%), Gaps = 21/135 (15%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRTL+E  GQ       +      +   EA   V+  GPPG GKTT+A +++   G  
Sbjct: 35  MRPRTLDEVVGQQHLLGPGRPLRRLIEGSGEA--SVILYGPPGTGKTTIASLISAATGDR 92

Query: 82  FRSTSG---------PVIAKAGDLAALLTNL--EDRDVLFIDEIHRLSIIVEEILYPAME 130
           F + S           VI +A       T+L    R VLFIDE+HR S   ++ L  A+E
Sbjct: 93  FVALSALSSGVKEVREVINRA------RTDLIHGARTVLFIDEVHRFSKTQQDALLAAVE 146

Query: 131 DFQLDLMVG--EGPS 143
           +  + L+    E PS
Sbjct: 147 NRTVLLVAATTENPS 161


>gi|289207843|ref|YP_003459909.1| ATPase AAA [Thioalkalivibrio sp. K90mix]
 gi|288943474|gb|ADC71173.1| AAA ATPase central domain protein [Thioalkalivibrio sp. K90mix]
          Length = 454

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/133 (33%), Positives = 66/133 (49%), Gaps = 17/133 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP  L+E  GQ   V   + L+  IE  +  +     ++  GPPG GKTTLA++VA   
Sbjct: 39  MRPARLDEMVGQDHLVGPDAALRQAIEQGQTPS-----MILWGPPGCGKTTLARLVA-AA 92

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDF 132
           G     T   V+A   D+ A++   + R       +LFIDEIHR +   ++ L P +ED 
Sbjct: 93  GAQRLVTLSAVLAGVKDVRAVVDAAKARRRNGVGTLLFIDEIHRFNKGQQDALLPHIEDG 152

Query: 133 QLDLM--VGEGPS 143
            L  +    E PS
Sbjct: 153 TLTFVGATTENPS 165


>gi|311748366|ref|ZP_07722151.1| ATPase, AAA family [Algoriphagus sp. PR1]
 gi|126576875|gb|EAZ81123.1| ATPase, AAA family [Algoriphagus sp. PR1]
          Length = 420

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 70/142 (49%), Gaps = 10/142 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  LE+  GQ    S      +A K+    +  ++  GPPG+GKTT+A ++A E+   
Sbjct: 10  MRPVRLEDLIGQEHLSSPNSFLFKAIKSGN--VPSLILWGPPGVGKTTIANIIANEIKAP 67

Query: 82  FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137
           F + S  + +   D+  ++     +   VLFIDEIHR +   ++ L  A+E   + L+  
Sbjct: 68  FYTLSA-ISSGVKDIREVIEKAKFQMGVVLFIDEIHRFNKSQQDALLGAVEKGIIRLIGA 126

Query: 138 VGEGPSARSVKINLSR---FTL 156
             E PS       LSR   FTL
Sbjct: 127 TTENPSFEVNAALLSRCQVFTL 148


>gi|114766058|ref|ZP_01445068.1| AAA ATPase [Pelagibaca bermudensis HTCC2601]
 gi|114541693|gb|EAU44733.1| AAA ATPase [Roseovarius sp. HTCC2601]
          Length = 434

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 61/212 (28%), Positives = 91/212 (42%), Gaps = 38/212 (17%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP TL++  GQ    +   +     + +A AL  ++  GPPG+GKTT+A+ V   LG  
Sbjct: 20  LRPETLDDVIGQPAITAEGSILRR--RIKAGALGSLILYGPPGIGKTTIARAVGTMLGKE 77

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDV----LFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           FR    P+ A    +  L    ++  +    +F+DE+HR S    + L    E+   D  
Sbjct: 78  FR----PLHATRDGVKELRKIADEARIRPLLIFVDEVHRFSATQADDLLSICEEGTAD-- 131

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNP--LQDRFGIPIRLNFYEIEDLKTIVQRG 195
                              + ATT       P  L  R  I ++L    +ED++ +V+RG
Sbjct: 132 ------------------FVGATTGNPYHALPPALVSRSTI-LKLEPMSLEDMEQVVRRG 172

Query: 196 A---KLTGLAV--TDEAACEIAMRSRGTPRIA 222
                 TGL V  T E    +A RS G  R A
Sbjct: 173 IDHLHSTGLDVEMTPEQVRLVAGRSGGDARRA 204


>gi|325105535|ref|YP_004275189.1| AAA ATPase central domain protein [Pedobacter saltans DSM 12145]
 gi|324974383|gb|ADY53367.1| AAA ATPase central domain protein [Pedobacter saltans DSM 12145]
          Length = 426

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 71/146 (48%), Gaps = 22/146 (15%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH-----VLFVGPPGLGKTTLAQVVAR 76
           +RP+ L+E+TGQ       K  +       +A+D      ++F GPPG+GKTTL+ ++A+
Sbjct: 11  MRPKNLDEYTGQ-------KHLVGPGAVLRKAIDKGNIPSMIFWGPPGVGKTTLSFIIAQ 63

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLSIIVEEILYPAM 129
                F S S  + +   D+  ++   +          VLFIDEIHR S   ++ L  A+
Sbjct: 64  SQDRPFFSLSA-INSGVKDVRDVIDKAKMYKKAGHPIPVLFIDEIHRFSKSQQDSLLGAV 122

Query: 130 EDFQLDLM--VGEGPSARSVKINLSR 153
           E   + L+    E PS   +   LSR
Sbjct: 123 ERGYVTLIGATTENPSFEVISALLSR 148


>gi|37679508|ref|NP_934117.1| recombination factor protein RarA [Vibrio vulnificus YJ016]
 gi|37198252|dbj|BAC94088.1| putative ATPase protein [Vibrio vulnificus YJ016]
          Length = 449

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 64/147 (43%), Gaps = 9/147 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP T+E++ GQ       K    A +A    +  ++  GPPG GKTTLA+V A      
Sbjct: 21  MRPETIEQYIGQQHILGPGKPLRRALEAGH--IHSMILWGPPGTGKTTLAEVAANYANAE 78

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-----RDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
               S          AA+    E+     R +LF+DE+HR +   ++   P +ED  +  
Sbjct: 79  VERVSAVTSGVKEIRAAIEKARENKMAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVTF 138

Query: 137 M--VGEGPSARSVKINLSRFTLIAATT 161
           +    E PS       LSR  +   T+
Sbjct: 139 IGATTENPSFELNNALLSRARVYKLTS 165


>gi|190347392|gb|EDK39649.2| hypothetical protein PGUG_03747 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 572

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 60/128 (46%), Gaps = 23/128 (17%)

Query: 21  LLRPRTLEEFTGQVEACSN----LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           L+RP +L ++ GQ    ++    +  FI     R   L  ++  GPPG+GKTTLA ++A+
Sbjct: 89  LVRPSSLHQYIGQNHLTNHRNGAITNFI-----RLGYLPSMILHGPPGVGKTTLASIIAK 143

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED-------------RDVLFIDEIHRLSIIVEE 123
           E G      S    A    +  L   + D             R  +FIDEIHR S + ++
Sbjct: 144 EAGYVMVELSA-TDATVSTIRRLSNEIRDENRKRTKLGTPHLRVCVFIDEIHRFSKVQQD 202

Query: 124 ILYPAMED 131
            L P +E+
Sbjct: 203 FLLPFVEE 210


>gi|163868623|ref|YP_001609832.1| recombination factor protein RarA [Bartonella tribocorum CIP
           105476]
 gi|161018279|emb|CAK01837.1| ATPase, AAA family [Bartonella tribocorum CIP 105476]
          Length = 455

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 103/244 (42%), Gaps = 37/244 (15%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP +L E  GQ        +   +    A ++  ++F GPPG GKTT+A+++A E    
Sbjct: 40  MRPCSLNEVVGQKHLIGEDGLL--SRMVAAGSIGSLIFWGPPGTGKTTVARLLALETNFA 97

Query: 82  FRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F   S  +     +L  +    +      D+ +LF+DEIHR +   ++   P ME+  + 
Sbjct: 98  FEQVSA-IFTGVSELKKIFEVAQRRFMSGDKTLLFVDEIHRFNRAQQDSFLPVMENGTV- 155

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           +++G      S ++N       A  +R  +LT    D             E L  +++R 
Sbjct: 156 VLIGATTENPSFELN------AALLSRARVLTFFSHDH------------ESLGMLLKRA 197

Query: 196 AKLTG--LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
            ++ G  L + D A   +   S G  R+A  L   V   A        + EI DA  L+ 
Sbjct: 198 EEVEGKLLPLDDGARDVLIGMSDGDARVALTLAEEVWSVAR-------SEEILDAGALQK 250

Query: 254 AIDK 257
            I +
Sbjct: 251 VIQR 254


>gi|121608726|ref|YP_996533.1| recombination factor protein RarA [Verminephrobacter eiseniae
           EF01-2]
 gi|121553366|gb|ABM57515.1| Recombination protein MgsA [Verminephrobacter eiseniae EF01-2]
          Length = 452

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 101/246 (41%), Gaps = 45/246 (18%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP TL    GQ         L++  E+ +  +      +  GPPG+GKTT+A+++A   
Sbjct: 20  LRPHTLGAVVGQQHVLGPGMPLRLAFESGRPHS-----CILWGPPGVGKTTIARLMADAF 74

Query: 79  GVNFRSTSGPVIAKAGDLAALLTN--------LEDRDVLFIDEIHRLSIIVEEILYPAME 130
              F S S  V+    D+ A +          ++ R ++F+DE+HR +   ++   P +E
Sbjct: 75  DAQFISISA-VLGGVKDIRAAVERAEAARDGLMQQRTIVFVDEVHRFNKSQQDAFLPHVE 133

Query: 131 D--FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
              F       E PS       LSR T+         +  PL               +DL
Sbjct: 134 SGLFTFIGATTENPSFEVNSALLSRATVY--------VLQPL-------------SAQDL 172

Query: 189 KTIVQRGAKLTGLAVTDEAACE-IAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           + IV        L   ++AA E +   + G  R   RLL  +   A  A  + +  EI D
Sbjct: 173 QQIVALAQAQHALPAIEDAAVERLVAYADGDAR---RLLNTLETLAMAAAGQRLA-EITD 228

Query: 248 AALLRL 253
           A LL++
Sbjct: 229 AWLLKV 234


>gi|255100294|ref|ZP_05329271.1| recombination factor protein RarA [Clostridium difficile QCD-63q42]
          Length = 421

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 71/142 (50%), Gaps = 10/142 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+T+ +  GQ     N K+   +   ++  L +++F GPPG+GKTT+A+++A     +
Sbjct: 7   IRPKTMNDVIGQSHIIGNGKIL--SKILQSNFLPNMIFFGPPGVGKTTVAEIIAERSNKS 64

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRD-----VLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           F   +    +   D+  +++ L   +     +L+IDEI   +   ++ +   ME+  + L
Sbjct: 65  FYKINA-TNSSLEDIKKVISELGSINNVNGVLLYIDEIQSFNKKQQQSILEFMENGSITL 123

Query: 137 MVG--EGPSARSVKINLSRFTL 156
           +    E P     K  LSR T+
Sbjct: 124 IASTTENPYHYVYKALLSRSTV 145


>gi|86147114|ref|ZP_01065431.1| hypothetical protein MED222_12378 [Vibrio sp. MED222]
 gi|85835179|gb|EAQ53320.1| hypothetical protein MED222_12378 [Vibrio sp. MED222]
          Length = 449

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 89/221 (40%), Gaps = 25/221 (11%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP T+E++ GQ       K    A +A    +  ++  GPPG GKTTLA+V A      
Sbjct: 21  MRPETVEQYIGQQHILGPGKPLRRALEAGH--IHSMILWGPPGTGKTTLAEVAANYANAE 78

Query: 82  FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
               S  V +   D+   +    +      R +LF+DE+HR +   ++   P +ED  + 
Sbjct: 79  VERVSA-VTSGVKDIRIAIEKARENKQAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVT 137

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
            +    E PS       LSR        RV  LT+   +   + IR     IED     Q
Sbjct: 138 FIGATTENPSFELNNALLSR-------ARVYKLTSLNTEDISLVIRQ---AIED----KQ 183

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
           RG         D     +A    G  R++   L  + D AE
Sbjct: 184 RGLGDVSADFADNVLDRLAELVNGDARMSLNYLELLYDMAE 224


>gi|327398754|ref|YP_004339623.1| DNA polymerase III subunits gamma and tau [Hippea maritima DSM
           10411]
 gi|327181383|gb|AEA33564.1| DNA polymerase III, subunits gamma and tau [Hippea maritima DSM
           10411]
          Length = 417

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 82/311 (26%), Positives = 126/311 (40%), Gaps = 61/311 (19%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH-VLFVGPPGLGKTTLAQVVARELGVN 81
           RP  L E  GQ  A + LK  IE      E L H +L  GP G GKT+LA+++A+ L   
Sbjct: 10  RPSKLSEVIGQPVATTILKNAIET-----EKLHHAILLAGPMGTGKTSLARIIAKSLNCQ 64

Query: 82  FRSTSGPVIAKAGDLAAL--LTNLEDRDVLFID-----EIHRLSIIVEEILYP------- 127
               +GP     G+  A   +   +D DV+ ID     +I     I+E + YP       
Sbjct: 65  ----NGPTTEPCGECEACKAIALGKDVDVIEIDGASNRKIENARNIIESVKYPPLKRRFK 120

Query: 128 ----------AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
                      +E F   L   E P              I ATT +  +   +  R  I 
Sbjct: 121 VYIIDEIHMFTLEAFNAMLKTIEEPP--------EYVKFIFATTAIEKIPETILSRCQI- 171

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
           + LN     +++  ++  A    + + +EA   I+  S G+ R+A   L R   F     
Sbjct: 172 LTLNRIPKNEIEKKLKYIASQENIKIDNEAIELISYASTGSLRVAEGFLDRCIAFKP--- 228

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDL--RYLTMIARNFGGGPVGI----ETISAGLSE 291
             TIT+E  D +++      +G    D+   Y+  I +N     + I     TIS+ L  
Sbjct: 229 TDTITKE--DVSVV------VGIPTKDVVNSYVEFIIQNKAKEALDIIKNLNTISSNLQT 280

Query: 292 -PRDAIEDLIE 301
             +  IE++IE
Sbjct: 281 FTKQVIENIIE 291


>gi|47566587|ref|ZP_00237409.1| ATPase, AAA family [Bacillus cereus G9241]
 gi|47556617|gb|EAL14949.1| ATPase, AAA family [Bacillus cereus G9241]
          Length = 431

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 129/330 (39%), Gaps = 65/330 (19%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  ++E  GQ       K+     +A       ++  GPPG GKT++A  +A   G  
Sbjct: 9   MRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAIAGSTGTP 66

Query: 82  FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
           FR  +  V     D+  ++    +    +L +DE+HRL    ++ L P +E   L     
Sbjct: 67  FRLLNA-VTHNKKDMEVVVQEAKMYRHLILILDEVHRLDKAKQDFLLPHLESGLL----- 120

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEI----ED-----LK 189
                          TLI ATT     +NP       I  R   +E+    ED     LK
Sbjct: 121 ---------------TLIGATT-----SNPFHAINSAIRSRCQIFELHALTEDDLLIGLK 160

Query: 190 TIVQRGAKLTG---LAVTDEAACEIAMRSRGTPRIAGRLLRR--VRDFAEVAHAKTITRE 244
             ++   K  G   + VT EA    A  S G  R A   L    +  F     A  IT E
Sbjct: 161 RALEDKEKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLE 220

Query: 245 IADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           IA+  L + +   DK G    D+  L+   ++  G  V              A+  L   
Sbjct: 221 IAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDVNA------------ALHYLAR- 265

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
            +I+ G +Q    GR L+ +A++ +G+  P
Sbjct: 266 -LIEAGDLQSI--GRRLLIMAYEDIGLASP 292


>gi|328351596|emb|CCA37995.1| Uncharacterized AAA domain-containing protein C26H5.02c [Pichia
           pastoris CBS 7435]
          Length = 863

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/136 (33%), Positives = 65/136 (47%), Gaps = 22/136 (16%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75
           LRP+TLEE+ GQ   V     L+ FIE  +  +     ++  GPPG+GKT+LA+++A   
Sbjct: 438 LRPKTLEEYVGQSHLVGPTGVLRGFIEHDRVPS-----MILWGPPGVGKTSLARIIAAST 492

Query: 76  RELGVNFRSTSG------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
               V   +TS        V  +A +   L      R VLF DEIHR +   ++   P +
Sbjct: 493 HNRCVELSATSSGISECRKVFEEARNEMRLTKR---RTVLFCDEIHRFNKSQQDAFLPYV 549

Query: 130 E--DFQLDLMVGEGPS 143
           E  D  L     E PS
Sbjct: 550 ERGDIILIGATTENPS 565


>gi|296270023|ref|YP_003652655.1| AAA ATPase central domain-containing protein [Thermobispora bispora
           DSM 43833]
 gi|296092810|gb|ADG88762.1| AAA ATPase central domain protein [Thermobispora bispora DSM 43833]
          Length = 436

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 60/120 (50%), Gaps = 16/120 (13%)

Query: 22  LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL+E  GQ       + L+  +E+     +A   ++  GPPG GKTTLA VV+   
Sbjct: 24  MRPRTLDEVVGQRHLLGPDTPLRRLVES-----DAPMSLILWGPPGTGKTTLAYVVSNTT 78

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAMED 131
              F   S  V A   ++ A +            + VLF+DE+HR +   ++ L PA+E+
Sbjct: 79  ARRFVEISA-VSAGVKEVRAAIEQARRELGMTGRQTVLFVDEVHRFNKAQQDALLPAVEN 137


>gi|254974821|ref|ZP_05271293.1| recombination factor protein RarA [Clostridium difficile QCD-66c26]
 gi|255092209|ref|ZP_05321687.1| recombination factor protein RarA [Clostridium difficile CIP
           107932]
 gi|255306233|ref|ZP_05350405.1| recombination factor protein RarA [Clostridium difficile ATCC
           43255]
 gi|255313948|ref|ZP_05355531.1| recombination factor protein RarA [Clostridium difficile QCD-76w55]
 gi|255516628|ref|ZP_05384304.1| recombination factor protein RarA [Clostridium difficile QCD-97b34]
 gi|255649727|ref|ZP_05396629.1| recombination factor protein RarA [Clostridium difficile QCD-37x79]
 gi|306519837|ref|ZP_07406184.1| recombination factor protein RarA [Clostridium difficile QCD-32g58]
          Length = 421

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 71/142 (50%), Gaps = 10/142 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+T+ +  GQ     N K+   +   ++  L +++F GPPG+GKTT+A+++A     +
Sbjct: 7   IRPKTMNDVIGQSHIIGNGKIL--SKILQSNFLPNMIFFGPPGVGKTTVAEIIAERSNKS 64

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRD-----VLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           F   +    +   D+  +++ L   +     +L+IDEI   +   ++ +   ME+  + L
Sbjct: 65  FYKINA-TNSSLEDIKKVISELGSINNVNGVLLYIDEIQSFNKKQQQSILEFMENGSITL 123

Query: 137 MVG--EGPSARSVKINLSRFTL 156
           +    E P     K  LSR T+
Sbjct: 124 IASTTENPYHYVYKALLSRSTV 145


>gi|260682883|ref|YP_003214168.1| recombination factor protein RarA [Clostridium difficile CD196]
 gi|260686481|ref|YP_003217614.1| recombination factor protein RarA [Clostridium difficile R20291]
 gi|260209046|emb|CBA62163.1| putative ATPase [Clostridium difficile CD196]
 gi|260212497|emb|CBE03422.1| putative ATPase [Clostridium difficile R20291]
          Length = 431

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 71/142 (50%), Gaps = 10/142 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+T+ +  GQ     N K+   +   ++  L +++F GPPG+GKTT+A+++A     +
Sbjct: 17  IRPKTMNDVIGQSHIIGNGKIL--SKILQSNFLPNMIFFGPPGVGKTTVAEIIAERSNKS 74

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRD-----VLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           F   +    +   D+  +++ L   +     +L+IDEI   +   ++ +   ME+  + L
Sbjct: 75  FYKINA-TNSSLEDIKKVISELGSINNVNGVLLYIDEIQSFNKKQQQSILEFMENGSITL 133

Query: 137 MVG--EGPSARSVKINLSRFTL 156
           +    E P     K  LSR T+
Sbjct: 134 IASTTENPYHYVYKALLSRSTV 155


>gi|329944922|ref|ZP_08292949.1| recombination factor protein RarA [Actinomyces sp. oral taxon 170
           str. F0386]
 gi|328529733|gb|EGF56629.1| recombination factor protein RarA [Actinomyces sp. oral taxon 170
           str. F0386]
          Length = 476

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 72/148 (48%), Gaps = 19/148 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPR L++  GQ   +   + L   + + +     L  ++  GPPG GKTT+A+++A   
Sbjct: 62  LRPRALDDVVGQDQLLAPGAPLGRMVASGR-----LSSIVLWGPPGCGKTTVARLLADRT 116

Query: 79  GVNFRSTSGPVIAKAGDL------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           G+ F   S    +   DL      AA    +    +LF+DEIHR +   ++   P +ED 
Sbjct: 117 GLVFEQVSA-TFSGVADLRKVFAAAARRREIGQGTLLFVDEIHRFNRAQQDSFLPYVEDG 175

Query: 133 QLDLMVGEGPSARSVKIN---LSRFTLI 157
            + ++VG      S ++N   LSR  ++
Sbjct: 176 TV-VLVGATTENPSFELNGALLSRCQVM 202


>gi|238792411|ref|ZP_04636045.1| Replication-associated recombination protein A [Yersinia intermedia
           ATCC 29909]
 gi|238728337|gb|EEQ19857.1| Replication-associated recombination protein A [Yersinia intermedia
           ATCC 29909]
          Length = 444

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 72/149 (48%), Gaps = 11/149 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP TL+++ GQ    +  K    A  A    L  ++  GPPG GKTTLA+++ R    +
Sbjct: 17  MRPLTLDQYIGQQHLLAPGKPLPRAIVA--GQLHSMILWGPPGTGKTTLAEIIGRYGQAD 74

Query: 82  FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
                  TSG   I +A + A    +   R +LF+DE+HR +   ++   P +ED  +  
Sbjct: 75  VERISAVTSGIKEIREAIERARQNRDAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 134

Query: 137 M--VGEGPS--ARSVKINLSRFTLIAATT 161
           +    E PS    S  ++ +R  L+ A T
Sbjct: 135 IGATTENPSFELNSALLSRARVYLLKALT 163


>gi|328887601|emb|CAJ68132.2| putative replication-associated recombination protein A RarA
           [Clostridium difficile]
          Length = 421

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 71/142 (50%), Gaps = 10/142 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+T+ +  GQ     N K+   +   ++  L +++F GPPG+GKTT+A+++A     +
Sbjct: 7   IRPKTMNDVIGQSHIIGNGKIL--SKILQSNFLPNMIFFGPPGVGKTTVAEIIAERSNKS 64

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRD-----VLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           F   +    +   D+  +++ L   +     +L+IDEI   +   ++ +   ME+  + L
Sbjct: 65  FYKINA-TNSSLEDIKKVISELGSINNVNGVLLYIDEIQSFNKKQQQSILEFMENGSITL 123

Query: 137 MVG--EGPSARSVKINLSRFTL 156
           +    E P     K  LSR T+
Sbjct: 124 IASTTENPYHYVYKALLSRSTV 145


>gi|158523435|gb|ABW70832.1| AAA-family ATPase [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
          Length = 408

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 103/240 (42%), Gaps = 36/240 (15%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+++EE  GQ    S      +      + +  ++  G PG+GKTTLA+++A    + 
Sbjct: 6   LRPQSIEEVIGQEHILSKSGSLTKILAG--DGICSLILCGKPGVGKTTLAKIIASSKRLE 63

Query: 82  FRSTSGPVIAKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
           F   S  V +   D+  ++ + +     VLF+DEIHR +   +++L P +E         
Sbjct: 64  FFELSA-VDSGVKDVKKIIADNQHLGSFVLFLDEIHRFNKSQQDLLLPYVES-------- 114

Query: 140 EGPSARSVKINLSRFTLIAATTR--VGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG-- 195
                        +  LI ATT      L N L  R  I +RL    I + + ++QR   
Sbjct: 115 ------------GKIILIGATTENPTYYLNNALVSRVFI-LRLKRLNISETRKLIQRAIT 161

Query: 196 -----AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
                AK +   + D+    I   S G  R    LL R+   ++  +   + +++ D A+
Sbjct: 162 KDELLAKHS-FEIDDDLYNAIHNYSEGDCRKILNLLERMFLISDRTNTIHLDKDLFDRAV 220


>gi|294496335|ref|YP_003542828.1| replication factor C small subunit [Methanohalophilus mahii DSM
           5219]
 gi|292667334|gb|ADE37183.1| replication factor C small subunit [Methanohalophilus mahii DSM
           5219]
          Length = 318

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 95/253 (37%), Gaps = 47/253 (18%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           +E+  I   RP  LE+  GQ +A   L+ +I     +   L H+LF GPPG+GKT  A  
Sbjct: 2   KEEIWIEKYRPYRLEDVVGQSDAIERLRSYI-----KTNNLPHLLFSGPPGVGKTATAVS 56

Query: 74  VAREL------------------GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIH 115
           +AREL                  G++   T     AK   +        D  ++F+DE  
Sbjct: 57  IARELFGDDWRENFTELNASDERGIDVVRTKIKNFAKTSPIGGA-----DFKIIFLDEAD 111

Query: 116 RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
            L+   +  L   ME +                 N  RF L  +      +  P+Q R  
Sbjct: 112 ALTPDAQSALRRTMERY----------------TNNCRFIL--SCNYSSKIIEPIQSRCA 153

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
           +  R      + +    +  A+  GL + D+    I   + G  R A   ++    F   
Sbjct: 154 V-YRFRPLSDDAIGKRCRHIAEKEGLDIADDGIEAIKYVAEGDMRKAINAVQAASMFDTS 212

Query: 236 AHAKTITREIADA 248
            HA +I R  A A
Sbjct: 213 IHADSIYRITATA 225


>gi|126698873|ref|YP_001087770.1| recombination factor protein RarA [Clostridium difficile 630]
          Length = 431

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 71/142 (50%), Gaps = 10/142 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+T+ +  GQ     N K+   +   ++  L +++F GPPG+GKTT+A+++A     +
Sbjct: 17  IRPKTMNDVIGQSHIIGNGKIL--SKILQSNFLPNMIFFGPPGVGKTTVAEIIAERSNKS 74

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRD-----VLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           F   +    +   D+  +++ L   +     +L+IDEI   +   ++ +   ME+  + L
Sbjct: 75  FYKINA-TNSSLEDIKKVISELGSINNVNGVLLYIDEIQSFNKKQQQSILEFMENGSITL 133

Query: 137 MVG--EGPSARSVKINLSRFTL 156
           +    E P     K  LSR T+
Sbjct: 134 IASTTENPYHYVYKALLSRSTV 155


>gi|182413522|ref|YP_001818588.1| ATPase central domain-containing protein [Opitutus terrae PB90-1]
 gi|177840736|gb|ACB74988.1| AAA ATPase central domain protein [Opitutus terrae PB90-1]
          Length = 448

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 64/117 (54%), Gaps = 13/117 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPR L E  GQ   ++  S L   +  A+ R  +L   +F GPPG GKT++A+ +A+E 
Sbjct: 33  MRPRRLAEVVGQSHILKPGSLLPRLV--AQNRFGSL---IFYGPPGCGKTSIAEAIAQET 87

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNL----EDRDVLFIDEIHRLSIIVEEILYPAMED 131
              F   +  V++   +L  +L +     +   +LFIDE+HR +   +++L P +E+
Sbjct: 88  NSRFVRVNA-VMSNVAELREILHSARRLPQASTILFIDELHRFNKSQQDLLLPDVEE 143


>gi|301166020|emb|CBW25594.1| putative AAA family ATPase protein [Bacteriovorax marinus SJ]
          Length = 432

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 84/213 (39%), Gaps = 37/213 (17%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP + E + GQ    +  K   E      +    ++  GPPG GKTTLA ++A       
Sbjct: 38  RPESFENYFGQEHIFTRYKFLKE------KNFPSLILWGPPGTGKTTLAHILAANSECEL 91

Query: 83  RSTSGPVIAKAGDLAALLT-------NLEDRDVLFIDEIHRLSIIVEEILYPAME--DFQ 133
            + +  V+    +L  L+T       +     ++F+DEIHR +   ++ L P +E   F+
Sbjct: 92  YNFNA-VLGGVNELKKLITTALQTKADFGREAIIFVDEIHRFNKAQQDALLPYVEQGSFK 150

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
                 E P +   K  LSR  +                     I L     E+L  I++
Sbjct: 151 FIGATTENPRSSVNKALLSRVQI---------------------IELKKLSEENLVHIIE 189

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
             +K   + +T EA   I   S G  R A  +L
Sbjct: 190 NVSKKFDIKITTEAIQFIGDYSNGDARNALNIL 222


>gi|241764126|ref|ZP_04762162.1| AAA ATPase central domain protein [Acidovorax delafieldii 2AN]
 gi|241366532|gb|EER61025.1| AAA ATPase central domain protein [Acidovorax delafieldii 2AN]
          Length = 391

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 79/175 (45%), Gaps = 17/175 (9%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFI 111
           ++  GPPG GKTTLA ++AR     FR+ S      P + +    AA       R VLF+
Sbjct: 1   MVLWGPPGCGKTTLALLLARYADAEFRAISAVLTGLPEVRQVLAEAAQRFAQGRRTVLFV 60

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+HR +   ++   P +E   + L VG      S ++N    + + +  RV +L     
Sbjct: 61  DEVHRFNKGQQDAFLPHIERGTI-LFVGATTENPSFELN----SALLSRCRVHVLEAVSA 115

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
                 +RL   + E       RG    G+ V+DE+  EIA  + G  R A  LL
Sbjct: 116 QDIVQALRLALDDGE-------RGLGSEGVQVSDESLGEIARAADGDVRRALTLL 163


>gi|162419653|ref|YP_001606119.1| recombination factor protein RarA [Yersinia pestis Angola]
 gi|165924481|ref|ZP_02220313.1| replication/recombination-associated protein RarA [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165938969|ref|ZP_02227522.1| replication/recombination-associated protein RarA [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|166009749|ref|ZP_02230647.1| replication/recombination-associated protein RarA [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166211508|ref|ZP_02237543.1| replication/recombination-associated protein RarA [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|167399951|ref|ZP_02305469.1| replication/recombination-associated protein RarA [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167419620|ref|ZP_02311373.1| replication/recombination-associated protein RarA [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167423984|ref|ZP_02315737.1| replication/recombination-associated protein RarA [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|167470160|ref|ZP_02334864.1| replication/recombination-associated protein RarA [Yersinia pestis
           FV-1]
 gi|170024908|ref|YP_001721413.1| recombination factor protein RarA [Yersinia pseudotuberculosis
           YPIII]
 gi|186894820|ref|YP_001871932.1| recombination factor protein RarA [Yersinia pseudotuberculosis
           PB1/+]
 gi|270486967|ref|ZP_06204041.1| replication-associated recombination protein A [Yersinia pestis KIM
           D27]
 gi|294503368|ref|YP_003567430.1| replication/recombination-associated protein RarA [Yersinia pestis
           Z176003]
 gi|162352468|gb|ABX86416.1| replication/recombination-associated protein RarA [Yersinia pestis
           Angola]
 gi|165913116|gb|EDR31740.1| replication/recombination-associated protein RarA [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|165923541|gb|EDR40673.1| replication/recombination-associated protein RarA [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165991145|gb|EDR43446.1| replication/recombination-associated protein RarA [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166207279|gb|EDR51759.1| replication/recombination-associated protein RarA [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|166962361|gb|EDR58382.1| replication/recombination-associated protein RarA [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167050659|gb|EDR62067.1| replication/recombination-associated protein RarA [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167056833|gb|EDR66596.1| replication/recombination-associated protein RarA [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|169751442|gb|ACA68960.1| AAA ATPase central domain protein [Yersinia pseudotuberculosis
           YPIII]
 gi|186697846|gb|ACC88475.1| AAA ATPase central domain protein [Yersinia pseudotuberculosis
           PB1/+]
 gi|262361408|gb|ACY58129.1| replication/recombination-associated protein RarA [Yersinia pestis
           D106004]
 gi|262365055|gb|ACY61612.1| replication/recombination-associated protein RarA [Yersinia pestis
           D182038]
 gi|270335471|gb|EFA46248.1| replication-associated recombination protein A [Yersinia pestis KIM
           D27]
 gi|294353827|gb|ADE64168.1| replication/recombination-associated protein RarA [Yersinia pestis
           Z176003]
          Length = 444

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 72/149 (48%), Gaps = 11/149 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP TL+++ GQ    +  K    A  A    L  ++  GPPG GKTTLA+++ R    +
Sbjct: 17  MRPLTLDQYIGQQHLLAPGKPLPRAIVA--GQLHSMILWGPPGTGKTTLAEIIGRYGQAD 74

Query: 82  FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
                  TSG   I +A + A    +   R +LF+DE+HR +   ++   P +ED  +  
Sbjct: 75  VERISAVTSGIKEIREAIERARQNRDAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 134

Query: 137 M--VGEGPS--ARSVKINLSRFTLIAATT 161
           +    E PS    S  ++ +R  L+ A T
Sbjct: 135 IGATTENPSFELNSALLSRARVYLLKALT 163


>gi|313891077|ref|ZP_07824696.1| ATPase, AAA family [Streptococcus pseudoporcinus SPIN 20026]
 gi|313120440|gb|EFR43560.1| ATPase, AAA family [Streptococcus pseudoporcinus SPIN 20026]
          Length = 423

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 59/126 (46%), Gaps = 18/126 (14%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+T+ E  GQ       K+     +A    L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPKTISEVIGQEHLVGEGKIIRRMVEANM--LSSMILYGPPGIGKTSIASAIAGTTKYA 66

Query: 82  FRSTSGPV--------IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           FR+ +           IA+    +  L       VL +DEIHRL    ++ L P +E+  
Sbjct: 67  FRTFNATTDTKKRLQEIAEEAKFSGGL-------VLLLDEIHRLDKTKQDFLLPLLENGN 119

Query: 134 LDLMVG 139
           + +M+G
Sbjct: 120 I-IMIG 124


>gi|241668070|ref|ZP_04755648.1| recombination factor protein RarA [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876605|ref|ZP_05249315.1| recombination factor protein rarA [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254842626|gb|EET21040.1| recombination factor protein rarA [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 412

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 103/240 (42%), Gaps = 36/240 (15%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+++EE  GQ    S      +      + +  ++  G PG+GKTTLA+++A    + 
Sbjct: 10  LRPQSIEEVIGQEHILSKSGSLTKILAG--DGICSLILCGKPGVGKTTLAKIIASSKRLE 67

Query: 82  FRSTSGPVIAKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
           F   S  V +   D+  ++ + +     VLF+DEIHR +   +++L P +E         
Sbjct: 68  FFELSA-VDSGVKDVKKIIADNQHLGSFVLFLDEIHRFNKSQQDLLLPYVES-------- 118

Query: 140 EGPSARSVKINLSRFTLIAATTR--VGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG-- 195
                        +  LI ATT      L N L  R  I +RL    I + + ++QR   
Sbjct: 119 ------------GKIILIGATTENPTYYLNNALVSRVFI-LRLKRLNISETRKLIQRAIT 165

Query: 196 -----AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
                AK +   + D+    I   S G  R    LL R+   ++  +   + +++ D A+
Sbjct: 166 KDELLAKHS-FEIDDDLYNAIHNYSEGDCRKILNLLERMFLISDRTNTIHLDKDLFDRAV 224


>gi|114327245|ref|YP_744402.1| recombination factor protein RarA [Granulibacter bethesdensis
           CGDNIH1]
 gi|114315419|gb|ABI61479.1| ATPase, AAA family [Granulibacter bethesdensis CGDNIH1]
          Length = 452

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 68/143 (47%), Gaps = 17/143 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP +L++  GQ   + A   L+   E+       L  ++  GPPG GKTT+A+++AR  
Sbjct: 36  LRPASLDDVVGQDHLLGAEGPLRRMTES-----RVLSSIILWGPPGTGKTTIARLLARST 90

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDF 132
            ++F + S  + +   DL  +      R       +LF DEIHR +   ++   P +ED 
Sbjct: 91  DLHFEAISA-IQSGVADLRKVFEAARQRRAAGKGTLLFCDEIHRFNRGQQDAFLPVVEDG 149

Query: 133 QLDLM--VGEGPSARSVKINLSR 153
            + L+    E PS       LSR
Sbjct: 150 TVTLVGATTENPSFELNSALLSR 172


>gi|238749783|ref|ZP_04611288.1| Replication-associated recombination protein A [Yersinia rohdei
           ATCC 43380]
 gi|238712438|gb|EEQ04651.1| Replication-associated recombination protein A [Yersinia rohdei
           ATCC 43380]
          Length = 444

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 72/149 (48%), Gaps = 11/149 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP TL+++ GQ    +  K    A  A    L  ++  GPPG GKTTLA+++ R    +
Sbjct: 17  MRPLTLDQYIGQQHLLAPGKPLPRAIVA--GQLHSMILWGPPGTGKTTLAEIIGRYGQAD 74

Query: 82  FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
                  TSG   I +A + A    +   R +LF+DE+HR +   ++   P +ED  +  
Sbjct: 75  VERISAVTSGIKEIREAIERARQNRDAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 134

Query: 137 M--VGEGPS--ARSVKINLSRFTLIAATT 161
           +    E PS    S  ++ +R  L+ A T
Sbjct: 135 IGATTENPSFELNSALLSRARVYLLKALT 163


>gi|160934386|ref|ZP_02081773.1| hypothetical protein CLOLEP_03258 [Clostridium leptum DSM 753]
 gi|156867059|gb|EDO60431.1| hypothetical protein CLOLEP_03258 [Clostridium leptum DSM 753]
          Length = 491

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 73/151 (48%), Gaps = 17/151 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+T+++  GQ   +     L+  IE+ +     + +++F GP G+GKTTLA ++AR+ 
Sbjct: 76  LRPKTIDDMVGQRHLLGPGKALRRIIESGE-----IPNLIFYGPSGVGKTTLASIIARQT 130

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAMEDF 132
               R  +G   A   DL  + T  E+        +L++DEI   +   ++ L   +E+ 
Sbjct: 131 NRALRKLNG-TTAGTADLREIFTEAENTFTAPNGILLYLDEIQYFNKKQQQTLLEFIENG 189

Query: 133 QLDLMVG--EGPSARSVKINLSRFTLIAATT 161
           ++ L+    E P        LSR T+    T
Sbjct: 190 KITLIASTTENPYFYVYNAILSRSTVFEFKT 220


>gi|22126674|ref|NP_670097.1| recombination factor protein RarA [Yersinia pestis KIM 10]
 gi|45441042|ref|NP_992581.1| recombination factor protein RarA [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51595743|ref|YP_069934.1| recombination factor protein RarA [Yersinia pseudotuberculosis IP
           32953]
 gi|108806665|ref|YP_650581.1| recombination factor protein RarA [Yersinia pestis Antiqua]
 gi|108812763|ref|YP_648530.1| recombination factor protein RarA [Yersinia pestis Nepal516]
 gi|145599589|ref|YP_001163665.1| recombination factor protein RarA [Yersinia pestis Pestoides F]
 gi|149366635|ref|ZP_01888669.1| putative ATPase protein [Yersinia pestis CA88-4125]
 gi|153948669|ref|YP_001401559.1| recombination factor protein RarA [Yersinia pseudotuberculosis IP
           31758]
 gi|218928526|ref|YP_002346401.1| recombination factor protein RarA [Yersinia pestis CO92]
 gi|229841347|ref|ZP_04461506.1| recombination protein [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229843452|ref|ZP_04463598.1| recombination protein [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229895824|ref|ZP_04510994.1| recombination protein [Yersinia pestis Pestoides A]
 gi|229903172|ref|ZP_04518285.1| recombination protein [Yersinia pestis Nepal516]
 gi|21959690|gb|AAM86348.1|AE013883_2 putative polynucleotide enzyme [Yersinia pestis KIM 10]
 gi|45435901|gb|AAS61458.1| putative ATPase protein [Yersinia pestis biovar Microtus str.
           91001]
 gi|51589025|emb|CAH20643.1| putative polynucleotide ATPase protein [Yersinia pseudotuberculosis
           IP 32953]
 gi|108776411|gb|ABG18930.1| Recombination protein MgsA [Yersinia pestis Nepal516]
 gi|108778578|gb|ABG12636.1| Recombination protein MgsA [Yersinia pestis Antiqua]
 gi|115347137|emb|CAL20030.1| putative ATPase protein [Yersinia pestis CO92]
 gi|145211285|gb|ABP40692.1| Recombination protein MgsA [Yersinia pestis Pestoides F]
 gi|149291009|gb|EDM41084.1| putative ATPase protein [Yersinia pestis CA88-4125]
 gi|152960164|gb|ABS47625.1| replication/recombination-associated protein RarA [Yersinia
           pseudotuberculosis IP 31758]
 gi|229678942|gb|EEO75045.1| recombination protein [Yersinia pestis Nepal516]
 gi|229689799|gb|EEO81860.1| recombination protein [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229697713|gb|EEO87760.1| recombination protein [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229700747|gb|EEO88776.1| recombination protein [Yersinia pestis Pestoides A]
 gi|320015765|gb|ADV99336.1| recombination protein [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 447

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 72/149 (48%), Gaps = 11/149 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP TL+++ GQ    +  K    A  A    L  ++  GPPG GKTTLA+++ R    +
Sbjct: 20  MRPLTLDQYIGQQHLLAPGKPLPRAIVA--GQLHSMILWGPPGTGKTTLAEIIGRYGQAD 77

Query: 82  FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
                  TSG   I +A + A    +   R +LF+DE+HR +   ++   P +ED  +  
Sbjct: 78  VERISAVTSGIKEIREAIERARQNRDAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 137

Query: 137 M--VGEGPS--ARSVKINLSRFTLIAATT 161
           +    E PS    S  ++ +R  L+ A T
Sbjct: 138 IGATTENPSFELNSALLSRARVYLLKALT 166


>gi|328951016|ref|YP_004368351.1| AAA ATPase central domain protein [Marinithermus hydrothermalis DSM
           14884]
 gi|328451340|gb|AEB12241.1| AAA ATPase central domain protein [Marinithermus hydrothermalis DSM
           14884]
          Length = 431

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 66/136 (48%), Gaps = 23/136 (16%)

Query: 22  LRPRTLEEFTGQVEACSNLKVF---IEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPR+LEE  GQ       K F   +E  +     L  ++  GPPG+GKTTLA+V+A+ +
Sbjct: 14  VRPRSLEEVVGQEHLTGPGKPFRRMLEIGR-----LHSMILWGPPGVGKTTLARVLAQGV 68

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED---------RDVLFIDEIHRLSIIVEEILYPAM 129
              F     P+ A A  +  +   +           R VLF+DE+HR +   ++ L P +
Sbjct: 69  RAEFI----PLSAVAAGVKEVREAVARAEAAARVGRRTVLFLDEVHRFNKAQQDALLPHV 124

Query: 130 EDFQLDLM--VGEGPS 143
           E   L L+    E PS
Sbjct: 125 ESGLLTLIGATTENPS 140


>gi|188588213|ref|YP_001920502.1| recombination factor protein RarA [Clostridium botulinum E3 str.
           Alaska E43]
 gi|251781076|ref|ZP_04823996.1| ATPase, AAA family [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|188498494|gb|ACD51630.1| ATPase, AAA family [Clostridium botulinum E3 str. Alaska E43]
 gi|243085391|gb|EES51281.1| ATPase, AAA family [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 414

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 97/212 (45%), Gaps = 26/212 (12%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  LE+F GQ +     K      K++   + + +  GPPG GKTTLA ++A  +   
Sbjct: 8   MRPTKLEDFVGQKQIIGEGKPLYNIIKSKN--IVNCILYGPPGTGKTTLANIMANYVDRK 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLE-----DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           F   +    A   D+  + ++L+     +  V++IDE+   S   ++ L   +E  Q+ L
Sbjct: 66  FYKLNATT-ASVKDIQEIASSLDTLLGYNGVVVYIDELQHFSKKQQQSLLEFIEKGQITL 124

Query: 137 MVG--EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           +    E P     K  LSR  +    T   L T+ +  +FG+        ++ ++  ++ 
Sbjct: 125 IASTTENPYFVLHKAILSRCNIF---TFKPLTTDDI--KFGV--------VKAIERAIEN 171

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
           G +   +  TD+A   IA  S+G  R A  +L
Sbjct: 172 GME---IKYTDDAISYIAEISQGDYRKAYNIL 200


>gi|305681055|ref|ZP_07403862.1| recombination factor protein RarA [Corynebacterium matruchotii ATCC
           14266]
 gi|305659260|gb|EFM48760.1| recombination factor protein RarA [Corynebacterium matruchotii ATCC
           14266]
          Length = 451

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 74/148 (50%), Gaps = 19/148 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPR+L+E  GQ   + A   L+  IE +   +     V+  GPPG GKTT+A ++++  
Sbjct: 34  MRPRSLDEVAGQDHVLAAGKPLRRLIEGSGDAS-----VILYGPPGTGKTTIASLISQAT 88

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLSIIVEEILYPAMED 131
              F   S  + +   ++ A++     RD       VLFIDE+HR S   ++ L  A+E+
Sbjct: 89  ARKFVGLSA-LNSGVKEVRAVIDQAR-RDLIQGMSTVLFIDEVHRFSKTQQDALLAAVEN 146

Query: 132 FQLDLMVG--EGPSARSVKINLSRFTLI 157
             + L+    E PS   V   LSR  ++
Sbjct: 147 RVVLLVAATTENPSFSVVAPLLSRSLIV 174


>gi|109898773|ref|YP_662028.1| recombination factor protein RarA [Pseudoalteromonas atlantica T6c]
 gi|109701054|gb|ABG40974.1| Recombination protein MgsA [Pseudoalteromonas atlantica T6c]
          Length = 445

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 18/134 (13%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP+ + E+ GQ   V     L+  IE     +     ++  GPPG GKTTLA+++A   
Sbjct: 22  MRPQNIAEYFGQQHIVGVGKPLRSAIERGHCHS-----MILWGPPGTGKTTLAEIIAMHC 76

Query: 79  GVNFRSTSGPVIAKAGDLAALLT-------NLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
             +    S  V +   D+ + +        N   R +LF+DE+HR +   ++   P +ED
Sbjct: 77  DAHIERISA-VTSGVKDIRSAIEQAKQNALNQAKRTILFVDEVHRFNKSQQDAFLPFIED 135

Query: 132 FQLDLM--VGEGPS 143
             +  +    E PS
Sbjct: 136 GTITFIGATTENPS 149


>gi|225859546|ref|YP_002741056.1| recombination factor protein RarA [Streptococcus pneumoniae 70585]
 gi|225721322|gb|ACO17176.1| chromosome segregation helicase [Streptococcus pneumoniae 70585]
          Length = 423

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+T+++  GQ     + K+     +A    L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPKTIDQVIGQEHLVGSGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTKYA 66

Query: 82  FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +  V +K       + A     L    VL +DEIHRL    ++ L P +E   L +
Sbjct: 67  FRTFNATVDSKKRLQEISEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121

Query: 137 MVG 139
           M+G
Sbjct: 122 MIG 124


>gi|225021329|ref|ZP_03710521.1| hypothetical protein CORMATOL_01348 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945711|gb|EEG26920.1| hypothetical protein CORMATOL_01348 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 451

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 74/148 (50%), Gaps = 19/148 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPR+L+E  GQ   + A   L+  IE +   +     V+  GPPG GKTT+A ++++  
Sbjct: 34  MRPRSLDEVAGQDHVLAAGKPLRRLIEGSGDAS-----VILYGPPGTGKTTIASLISQAT 88

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLSIIVEEILYPAMED 131
              F   S  + +   ++ A++     RD       VLFIDE+HR S   ++ L  A+E+
Sbjct: 89  ARKFVGLSA-LNSGVKEVRAVIDQAR-RDLIQGMSTVLFIDEVHRFSKTQQDALLAAVEN 146

Query: 132 FQLDLMVG--EGPSARSVKINLSRFTLI 157
             + L+    E PS   V   LSR  ++
Sbjct: 147 RVVLLVAATTENPSFSVVAPLLSRSLIV 174


>gi|182418940|ref|ZP_02950197.1| ATPase, AAA family [Clostridium butyricum 5521]
 gi|237668523|ref|ZP_04528507.1| AAA ATPase, central domain protein [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|182377223|gb|EDT74791.1| ATPase, AAA family [Clostridium butyricum 5521]
 gi|237656871|gb|EEP54427.1| AAA ATPase, central domain protein [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 414

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 97/212 (45%), Gaps = 26/212 (12%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  LE+F GQ +     K      K++   + + +  GPPG GKTTLA ++A  +   
Sbjct: 8   MRPTKLEDFVGQKQIIGEGKPLYNIIKSKN--IVNCILYGPPGTGKTTLANIMANYVDRK 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLE-----DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           F   +    A   D+  + ++L+     +  V++IDE+   S   ++ L   +E  Q+ L
Sbjct: 66  FYKLNATT-ASVKDIQEIASSLDTLLGYNGVVVYIDELQHFSKKQQQSLLEFIEKGQITL 124

Query: 137 MVG--EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           +    E P     K  LSR  +    T   L T+ +  +FG+        ++ ++  ++ 
Sbjct: 125 IASTTENPYFVLHKAILSRCNIF---TFKPLTTDDI--KFGV--------VKAIERAIEN 171

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
           G +   +  TD+A   IA  S+G  R A  +L
Sbjct: 172 GME---IKYTDDAISYIAEISQGDYRKAYNIL 200


>gi|16125532|ref|NP_420096.1| recombination factor protein RarA [Caulobacter crescentus CB15]
 gi|221234279|ref|YP_002516715.1| recombination factor protein RarA [Caulobacter crescentus NA1000]
 gi|13422618|gb|AAK23264.1| ATPase, AAA family [Caulobacter crescentus CB15]
 gi|220963451|gb|ACL94807.1| ATPase, AAA family [Caulobacter crescentus NA1000]
          Length = 433

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 55/116 (47%), Gaps = 9/116 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP++L+E  GQ             A AR   L  ++  GPPG GKTT+A+++A+  G  
Sbjct: 22  LRPQSLDEVVGQQHLLGPEGPIGRMAAARR--LASMILWGPPGTGKTTIARLLAKAGGYE 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMED 131
           F   S  V +   DL         R       +LF+DEIHR +   ++   P +E+
Sbjct: 80  FMQISA-VFSGVADLKKAFEQARARRMAGQSTLLFVDEIHRFNRAQQDGFLPFVEE 134


>gi|332184520|gb|AEE26774.1| ATPase, AAA family [Francisella cf. novicida 3523]
          Length = 412

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 76/149 (51%), Gaps = 15/149 (10%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP++++E  GQ    S   +  +      + +  ++  G PG+GKT+LA+++A    + 
Sbjct: 10  IRPQSIDEIVGQEHLLSQDGILTKILAV--DGICSLVLCGKPGVGKTSLARIIANSKKLE 67

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137
           F   S  V +   D+  ++ + +  D  VLF+DEIHR +   +++L P +E  ++ L+  
Sbjct: 68  FFELSA-VDSGVKDVKKIIADNQHLDSFVLFLDEIHRFNKSQQDLLLPYVESGKIILIGA 126

Query: 138 VGEGPS--------ARSVKINLSRFTLIA 158
             E P+        +R   + L R +L+A
Sbjct: 127 TTENPTYYLNDALVSRLFILRLKRLSLVA 155


>gi|332531345|ref|ZP_08407253.1| recombination factor protein RarA [Hylemonella gracilis ATCC 19624]
 gi|332039209|gb|EGI75627.1| recombination factor protein RarA [Hylemonella gracilis ATCC 19624]
          Length = 436

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 66/144 (45%), Gaps = 17/144 (11%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP TL E  GQ         L++  E+ +  +      +  GPPG GKTT+A+++A   
Sbjct: 17  LRPHTLGEVIGQQHLLGEGMPLRIAFESGQPHS-----CILWGPPGTGKTTIARLMADAF 71

Query: 79  GVNFRSTSGPV-----IAKAGDLAALLTN--LEDRDVLFIDEIHRLSIIVEEILYPAMED 131
           G  F S S  +     I +A +LA    +   + R ++F+DE+HR +   ++   P +E 
Sbjct: 72  GAQFISISAVLGGVKDIREAVELAEAARDGLQQQRTIVFVDEVHRFNKSQQDAFLPHVES 131

Query: 132 --FQLDLMVGEGPSARSVKINLSR 153
             F       E PS       LSR
Sbjct: 132 GLFTFIGATTENPSFEVNSALLSR 155


>gi|312864415|ref|ZP_07724648.1| recombination factor protein RarA [Streptococcus downei F0415]
 gi|311100136|gb|EFQ58347.1| recombination factor protein RarA [Streptococcus downei F0415]
          Length = 426

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+T+++  GQ       K+     +A    L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPKTIDDIIGQEHMVGQGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTKFA 66

Query: 82  FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +    +K       + A     L    VL +DEIHRL    ++ L P +E+  + +
Sbjct: 67  FRTFNATTDSKKRLQEIAEEAKFSGGL----VLMLDEIHRLDKTKQDFLLPLLENGNI-I 121

Query: 137 MVG 139
           M+G
Sbjct: 122 MIG 124


>gi|227542196|ref|ZP_03972245.1| crossover junction endodeoxyribonuclease [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227182025|gb|EEI62997.1| crossover junction endodeoxyribonuclease [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 574

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 58/116 (50%), Gaps = 9/116 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR+L+E  GQ    +  K      +   EA   V+  GPPG GKTT+A +++   G  
Sbjct: 33  MRPRSLDEVVGQQHLLAPGKPLRRLIEGDGEA--SVILYGPPGTGKTTIASLISVATGNR 90

Query: 82  FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMED 131
           F   S  + +   ++ A++           R VLFIDE+HR S   ++ L  A+E+
Sbjct: 91  FVGLSA-LDSGVKEVRAVIDTARKKLIEGTRTVLFIDEVHRFSKTQQDALLAAVEN 145


>gi|227488807|ref|ZP_03919123.1| crossover junction endodeoxyribonuclease [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227091229|gb|EEI26541.1| crossover junction endodeoxyribonuclease [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 542

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 58/116 (50%), Gaps = 9/116 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR+L+E  GQ    +  K      +   EA   V+  GPPG GKTT+A +++   G  
Sbjct: 1   MRPRSLDEVVGQQHLLAPGKPLRRLIEGDGEA--SVILYGPPGTGKTTIASLISVATGNR 58

Query: 82  FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMED 131
           F   S  + +   ++ A++           R VLFIDE+HR S   ++ L  A+E+
Sbjct: 59  FVGLSA-LDSGVKEVRAVIDTARKKLIEGTRTVLFIDEVHRFSKTQQDALLAAVEN 113


>gi|50307855|ref|XP_453921.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49643055|emb|CAH01017.1| KLLA0D19360p [Kluyveromyces lactis]
          Length = 559

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 75/156 (48%), Gaps = 25/156 (16%)

Query: 22  LRPRTLEEFTGQVEACSN----LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           LRP++L ++ GQ    +     L ++IE        +  ++  GPPG+GKT+LA+++   
Sbjct: 120 LRPKSLNDYIGQQHILNRETGCLYLYIEKG-----IIPSMILWGPPGVGKTSLARLLTNT 174

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLE---DRD-----------VLFIDEIHRLSIIVEE 123
           + +   +++  ++ +     A  T L    D+            VLFIDEIHR +   ++
Sbjct: 175 VNIQSDASTKYLLLETSATKANTTELRSIFDKSKKEYHLTKRMTVLFIDEIHRFNKAQQD 234

Query: 124 ILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLI 157
           +L P +E+  + L+    E PS +     LSR  L 
Sbjct: 235 LLLPHIENGDIVLIGATTENPSFQLNNALLSRCQLF 270


>gi|312795386|ref|YP_004028308.1| ATPase AAA [Burkholderia rhizoxinica HKI 454]
 gi|312167161|emb|CBW74164.1| ATPase, AAA family [Burkholderia rhizoxinica HKI 454]
          Length = 438

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 68/137 (49%), Gaps = 14/137 (10%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+T++E  GQ         L+V  E+ +  +     ++  GPPG+GKTTLA+++A   
Sbjct: 15  LRPKTIDEVIGQRHLLGENKPLRVAFESGEPHS-----MILWGPPGVGKTTLARLMAAAF 69

Query: 79  GVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
              F + S  +     I +A DLA        + ++F+DE+HR +   ++   P +E   
Sbjct: 70  HAEFIALSAVLSGVKDIREAVDLAQAHRARGRQTLVFVDEVHRFNKSQQDAFLPHVES-G 128

Query: 134 LDLMVGEGPSARSVKIN 150
           L + VG      S ++N
Sbjct: 129 LFVFVGATTENPSFEVN 145


>gi|161525591|ref|YP_001580603.1| recombination factor protein RarA [Burkholderia multivorans ATCC
           17616]
 gi|189349680|ref|YP_001945308.1| recombination factor protein RarA [Burkholderia multivorans ATCC
           17616]
 gi|221201180|ref|ZP_03574220.1| ATPase, AAA family [Burkholderia multivorans CGD2M]
 gi|221206366|ref|ZP_03579379.1| ATPase, AAA family [Burkholderia multivorans CGD2]
 gi|160343020|gb|ABX16106.1| AAA ATPase central domain protein [Burkholderia multivorans ATCC
           17616]
 gi|189333702|dbj|BAG42772.1| putative ATPase [Burkholderia multivorans ATCC 17616]
 gi|221173675|gb|EEE06109.1| ATPase, AAA family [Burkholderia multivorans CGD2]
 gi|221179030|gb|EEE11437.1| ATPase, AAA family [Burkholderia multivorans CGD2M]
          Length = 436

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 59/118 (50%), Gaps = 14/118 (11%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL +  GQ         L++  E+ K  +     ++  GPPG+GKTTLA++ A   
Sbjct: 17  LRPKTLADVIGQTHLLGEGKPLRLAFESGKPHS-----MILWGPPGVGKTTLARLTALAF 71

Query: 79  GVNFRSTSGPV-----IAKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAME 130
              F + S  +     I +A D A    N   R  +LF+DEIHR +   ++ L P +E
Sbjct: 72  DCEFIALSAVLGGVKDIREAMDQAKETLNRTGRHTILFVDEIHRFNKGQQDALLPFVE 129


>gi|299135226|ref|ZP_07028417.1| AAA ATPase central domain protein [Afipia sp. 1NLS2]
 gi|298590203|gb|EFI50407.1| AAA ATPase central domain protein [Afipia sp. 1NLS2]
          Length = 443

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 10/135 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP  L +  GQ              + R   L  ++F GPPG GKTT+A+++A    ++
Sbjct: 30  LRPHALADVVGQDHILGPDGALTRMLETRT--LGSLIFWGPPGTGKTTVARLLADATELH 87

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F   S  V +   DL  +      R       +LF+DE+HR +   ++   P MED  + 
Sbjct: 88  FEQISA-VFSGVADLKKVFDAARARRETGKGTLLFVDEVHRFNRAQQDSFLPVMEDGTV- 145

Query: 136 LMVGEGPSARSVKIN 150
           ++VG      S ++N
Sbjct: 146 VLVGATTENPSFELN 160


>gi|300120988|emb|CBK21370.2| unnamed protein product [Blastocystis hominis]
          Length = 475

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 68/148 (45%), Gaps = 26/148 (17%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARA----EALDHVLFVGPPGLGKTTLAQVVARE 77
           +RP +  E  G      N ++F E +  R     +     +  GP G GKTT+A +++++
Sbjct: 1   MRPTSFAELQG------NEELFAEGSVVRTLLEKDPPPSFILCGPSGCGKTTVAYIISKQ 54

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDRD----------VLFIDEIHRLSIIVEEILYP 127
               F+S S        DL  + + L++ D          +LF+DEIHR S   +++  P
Sbjct: 55  TTCPFKSLS----CCTSDLKEVRSVLDECDKVFFSTKTPTILFLDEIHRFSKNQQDVFLP 110

Query: 128 AMEDFQLDLM--VGEGPSARSVKINLSR 153
            +E  +L L+    E PS   +   LSR
Sbjct: 111 YVESGKLVLIGATTENPSFSIIPALLSR 138


>gi|238757607|ref|ZP_04618791.1| Replication-associated recombination protein A [Yersinia aldovae
           ATCC 35236]
 gi|238704112|gb|EEP96645.1| Replication-associated recombination protein A [Yersinia aldovae
           ATCC 35236]
          Length = 444

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 72/149 (48%), Gaps = 11/149 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP TL+++ GQ    +  K    A  A    L  ++  GPPG GKTTLA+++ R    +
Sbjct: 17  MRPLTLDQYIGQQHLLAPGKPLPRAIIA--GQLHSMILWGPPGTGKTTLAEIIGRYGQAD 74

Query: 82  FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
                  TSG   I +A + A    +   R +LF+DE+HR +   ++   P +ED  +  
Sbjct: 75  VERISAVTSGIKEIREAIERARQNRDAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 134

Query: 137 M--VGEGPS--ARSVKINLSRFTLIAATT 161
           +    E PS    S  ++ +R  L+ A T
Sbjct: 135 IGATTENPSFELNSALLSRARVYLLKALT 163


>gi|256371343|ref|YP_003109167.1| AAA ATPase central domain protein [Acidimicrobium ferrooxidans DSM
           10331]
 gi|256007927|gb|ACU53494.1| AAA ATPase central domain protein [Acidimicrobium ferrooxidans DSM
           10331]
          Length = 370

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 90/214 (42%), Gaps = 33/214 (15%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG-- 79
           LRP +L E  GQ  A + L+    A +  A     V+  GPPG+GKTT+A ++AR  G  
Sbjct: 18  LRPTSLAEVLGQDHARARLEALATAPRTIA-----VIMTGPPGVGKTTIASLLARARGEH 72

Query: 80  -VNFRSTSGPV--IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
            V   +T   V  + +A   AA      D  + F+DE+HR                QLDL
Sbjct: 73  LVELHATDTGVRDLREARAEAARRARHGDGTLWFVDEVHRFG------------RTQLDL 120

Query: 137 MVGEGPSARSVKINLSRFTLIAATTR--VGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           ++          I     + I ATT      L+  L  R  + +RL   E   L+ + +R
Sbjct: 121 LLA--------PIERGEISFIGATTENPAVTLSPALLSRCDV-VRLRALEPPVLRAVAER 171

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
                GL   D A   +   +RG  R   R+L R
Sbjct: 172 ALAHLGLIADDAAIAWLVAAARGDARALLRILER 205


>gi|194288885|ref|YP_002004792.1| recombination factor protein rara [Cupriavidus taiwanensis LMG
           19424]
 gi|193222720|emb|CAQ68723.1| recombination helicase ATPase [Cupriavidus taiwanensis LMG 19424]
          Length = 464

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 15/118 (12%)

Query: 22  LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPRT++E  GQ         L+V  E+ +  +     ++  GPPG+GKTTLA+++A   
Sbjct: 21  LRPRTIDEVIGQQHLLGPGKPLRVAFESGEPHS-----MILWGPPGVGKTTLARLMADAF 75

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130
              F + S  V++   D+   +   E       R ++F+DE+HR +   ++   P +E
Sbjct: 76  DAEFIALSA-VLSGVKDIREAVERAEQFRAHGRRTLVFVDEVHRFNKSQQDAFLPHVE 132


>gi|310815956|ref|YP_003963920.1| AAA ATPase [Ketogulonicigenium vulgare Y25]
 gi|308754691|gb|ADO42620.1| AAA ATPase [Ketogulonicigenium vulgare Y25]
          Length = 434

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 109/242 (45%), Gaps = 44/242 (18%)

Query: 20  SLLRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           ++LRP +L++  GQ E   A S L+  I A      AL  V+  GPPG+GKT++A+ V  
Sbjct: 18  AILRPTSLDDVIGQDEITRAGSILRRRIAAG-----ALGSVILYGPPGVGKTSIARAVGA 72

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVL-FIDEIHRLSIIVEEILYPAMEDFQLD 135
            LG +FR  +    A   D+  L        +L F+DE+ R S    + L    E+  +D
Sbjct: 73  MLGKSFRPLNA-TRAGVSDIRKLADEARMTPLLIFVDEVQRFSATQTDDLLAICEEGLVD 131

Query: 136 LMVGEGPSARSVKINLSRFTLIAATT--RVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
            M                     ATT     +LT  L  R  I ++L   ++  ++ +++
Sbjct: 132 FM--------------------GATTGNPYHVLTPALVSRSTI-LKLEPLDLTAMEQVLR 170

Query: 194 RG-----AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           RG     A  T +A++D     IA R+ G  R A  +L  +     V H+ T+  +I DA
Sbjct: 171 RGLQHLAAGGTEVAISDPHLRMIAGRAGGDARRALTVLESL----SVGHSGTV--QITDA 224

Query: 249 AL 250
            L
Sbjct: 225 ML 226


>gi|226941287|ref|YP_002796361.1| recombination factor protein RarA [Laribacter hongkongensis HLHK9]
 gi|226716214|gb|ACO75352.1| recombination factor protein RarA [Laribacter hongkongensis HLHK9]
          Length = 442

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 80/321 (24%), Positives = 121/321 (37%), Gaps = 48/321 (14%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP TL++  GQ       K    A ++R      ++  GPPG+GKTTLA+++A      
Sbjct: 19  LRPTTLDDVVGQQHLIGTGKPLRLAIESRTP--HSMILWGPPGVGKTTLARILAHAFDAE 76

Query: 82  FRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED--FQL 134
           F   S        I +A + A +        +LF+DE+HR +   ++   P +E   F  
Sbjct: 77  FTPLSAVFSGVKDIREAVERAQMAAARGRHTILFVDEVHRFNKSQQDAFLPFVEAGLFTF 136

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
                E PS       LSR  +         +  PL D           ++E L    Q 
Sbjct: 137 IGATTENPSFEVNAALLSRAQVY--------VLKPLTDA----------DLEALFVRAQA 178

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
              L GL +   A   +A  + G  R    LL + R  A     + +     D A L   
Sbjct: 179 AGVLEGLELDAAARAVLAGYADGDARRFLNLLEQTRTAARAQQVQHV-----DTAFLE-- 231

Query: 255 IDKMGFDQLDLRYLTMIARNF-GGGPVGIETISAGLSEPRDAIEDLIEPYMIQ--QGFIQ 311
                        LT+ AR F  GG    + ISA     R +  D    ++ +   G   
Sbjct: 232 -----------NVLTLNARRFDKGGDAFYDQISALHKSVRGSHPDAALYWLTRMLDGGAD 280

Query: 312 RTPRGRLLMPIAWQHLGIDIP 332
                R L+ +AW+ +G+  P
Sbjct: 281 PHYLARRLVRMAWEDIGLADP 301


>gi|15675782|ref|NP_269956.1| recombination factor protein RarA [Streptococcus pyogenes M1 GAS]
 gi|13623007|gb|AAK34677.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS]
          Length = 422

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+T+ E  GQ       K+     +A    L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPKTISEVIGQKHLVGEGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTRYA 66

Query: 82  FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +  + +K       + A     L    VL +DEIHRL    ++ L P +E+  + +
Sbjct: 67  FRTFNATIDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLENGTI-I 121

Query: 137 MVG 139
           M+G
Sbjct: 122 MIG 124


>gi|291166167|gb|EFE28213.1| ATPase, AAA family [Filifactor alocis ATCC 35896]
          Length = 420

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 73/144 (50%), Gaps = 10/144 (6%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           ++RP ++E+  GQ       K+     + +   + +++F GPPG GKTT+A+++A+   +
Sbjct: 8   IVRPHSIEQVVGQSHIIGKNKLINRLIEQKQ--MINLIFYGPPGTGKTTVAEILAKNSDL 65

Query: 81  NFRSTSGPVIAKAGDLAALLTNLEDRD-----VLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           ++   +    +K  D+  +  N+         +++IDEI   +   +++L   +E  Q+ 
Sbjct: 66  SYYKLNA-TYSKTQDIRDIAENINTFSGINGILIYIDEIQNFNKKQQQLLLEYIEKGQII 124

Query: 136 LMVG--EGPSARSVKINLSRFTLI 157
           L+    E P  +  K  LSR T+I
Sbjct: 125 LIASTTENPYHQIYKSLLSRCTVI 148


>gi|220926868|ref|YP_002502170.1| recombination factor protein RarA [Methylobacterium nodulans ORS
           2060]
 gi|219951475|gb|ACL61867.1| AAA ATPase central domain protein [Methylobacterium nodulans ORS
           2060]
          Length = 437

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 57/129 (44%), Gaps = 9/129 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP +L E  GQ              + R   L  ++  GPPG GKTT+A+++ARE  ++
Sbjct: 22  LRPTSLAEVVGQEHLTGEGGALTRLLRGRN--LGSLILWGPPGTGKTTVARLLARETALH 79

Query: 82  FRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           F   S        + K  D A          +LF+DEIHR +    +   P  ED  + L
Sbjct: 80  FEQISAIFSGVAELRKVFDAARARRAAGQGTLLFVDEIHRFNRAQLDAFLPVTEDGTVTL 139

Query: 137 M--VGEGPS 143
           +    E PS
Sbjct: 140 VGATTENPS 148


>gi|118444607|ref|YP_878358.1| recombination factor protein RarA [Clostridium novyi NT]
 gi|118135063|gb|ABK62107.1| ATPase, AAA family [Clostridium novyi NT]
          Length = 419

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 52/109 (47%), Gaps = 20/109 (18%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPR L EF GQ         L+  IE      + L  ++  GPPG+GKTTLA +++ E 
Sbjct: 21  MRPRNLNEFFGQKHIIGKGKLLRRLIET-----DNLTSIILYGPPGVGKTTLAYIISLET 75

Query: 79  GVNF---RSTSGPV------IAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
              F    +TS  V      I KA +   +L     R + FIDEIH L 
Sbjct: 76  KSEFVKLNATSAGVKEIREYIKKAEE---VLKFYGKRTIFFIDEIHSLK 121


>gi|262274499|ref|ZP_06052310.1| ATPase AAA family [Grimontia hollisae CIP 101886]
 gi|262221062|gb|EEY72376.1| ATPase AAA family [Grimontia hollisae CIP 101886]
          Length = 444

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 11/130 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  L+E+ GQ    +  K    A ++    L  ++  GPPG GKTTLA+V A      
Sbjct: 19  MRPTNLKEYIGQKHLLAEGKPLRRALES--GQLHSMILWGPPGTGKTTLAEVAAGYANAE 76

Query: 82  FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
               S  V +   D+   +   ++      R VLF+DE+HR +   ++   P +ED  + 
Sbjct: 77  IERVSA-VTSGVKDIRLAIDKAKENQMVGRRTVLFVDEVHRFNKSQQDAFLPHIEDGTIT 135

Query: 136 LM--VGEGPS 143
            +    E PS
Sbjct: 136 FIGATTENPS 145


>gi|255591254|ref|XP_002535477.1| werner helicase interacting protein, putative [Ricinus communis]
 gi|223522990|gb|EEF26907.1| werner helicase interacting protein, putative [Ricinus communis]
          Length = 422

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+T+ E  GQ       K+     +A    L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPKTISEVIGQKHLVGEGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTRYA 66

Query: 82  FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +  + +K       + A     L    VL +DEIHRL    ++ L P +E+  + +
Sbjct: 67  FRTFNATIDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLENGTI-I 121

Query: 137 MVG 139
           M+G
Sbjct: 122 MIG 124


>gi|209560132|ref|YP_002286604.1| recombination factor protein RarA [Streptococcus pyogenes NZ131]
 gi|209541333|gb|ACI61909.1| ATPase, AAA family [Streptococcus pyogenes NZ131]
          Length = 422

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+T+ E  GQ       K+     +A    L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPKTISEVIGQKHLVGEGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTRYA 66

Query: 82  FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +  + +K       + A     L    VL +DEIHRL    ++ L P +E+  + +
Sbjct: 67  FRTFNATIDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLENGTI-I 121

Query: 137 MVG 139
           M+G
Sbjct: 122 MIG 124


>gi|19746896|ref|NP_608032.1| recombination factor protein RarA [Streptococcus pyogenes MGAS8232]
 gi|94995187|ref|YP_603285.1| recombination factor protein RarA [Streptococcus pyogenes
           MGAS10750]
 gi|19749141|gb|AAL98531.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232]
 gi|94548695|gb|ABF38741.1| ATPase, AAA family [Streptococcus pyogenes MGAS10750]
          Length = 422

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+T+ E  GQ       K+     +A    L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPKTISEVIGQKHLVGEGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTRYA 66

Query: 82  FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +  + +K       + A     L    VL +DEIHRL    ++ L P +E+  + +
Sbjct: 67  FRTFNATIDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLENGTI-I 121

Query: 137 MVG 139
           M+G
Sbjct: 122 MIG 124


>gi|218710024|ref|YP_002417645.1| recombination factor protein RarA [Vibrio splendidus LGP32]
 gi|218323043|emb|CAV19220.1| Hypothetical protein VS_2044 [Vibrio splendidus LGP32]
          Length = 451

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 65/148 (43%), Gaps = 11/148 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP T+E++ GQ       K    A +A    +  ++  GPPG GKTTLA+V A      
Sbjct: 23  MRPETVEQYIGQQHILGPGKPLRRALEAGH--IHSMILWGPPGTGKTTLAEVAANYANAE 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
               S  V +   D+   +    +      R +LF+DE+HR +   ++   P +ED  + 
Sbjct: 81  VERVSA-VTSGVKDIRIAIEKARENKQAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVT 139

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATT 161
            +    E PS       LSR  +   T+
Sbjct: 140 FIGATTENPSFELNNALLSRARVYKLTS 167


>gi|71911512|ref|YP_283062.1| recombination factor protein RarA [Streptococcus pyogenes MGAS5005]
 gi|71854294|gb|AAZ52317.1| ATPase, AAA family [Streptococcus pyogenes MGAS5005]
          Length = 422

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+T+ E  GQ       K+     +A    L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPKTISEVIGQKHLVGEGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTRYA 66

Query: 82  FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +  + +K       + A     L    VL +DEIHRL    ++ L P +E+  + +
Sbjct: 67  FRTFNATIDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLENGTI-I 121

Query: 137 MVG 139
           M+G
Sbjct: 122 MIG 124


>gi|116618925|ref|YP_819296.1| recombination factor protein RarA [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116097772|gb|ABJ62923.1| Recombination protein MgsA [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 428

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 5/111 (4%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  +EE  GQ       K+      A    L  ++  GPPG GKT++A  +A      
Sbjct: 10  MRPTKIEEIVGQQHLVGEGKIIWRMVAAHR--LSSMILYGPPGTGKTSIASAIAGSSKYA 67

Query: 82  FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           FR  +    ++  DL  ++    +    VL +DEIHRL+ I ++ L P +E
Sbjct: 68  FRMLNAATDSQK-DLQIVVEEAKMSGTVVLLLDEIHRLNKIKQDFLLPHLE 117


>gi|94989334|ref|YP_597435.1| recombination factor protein RarA [Streptococcus pyogenes MGAS9429]
 gi|94993223|ref|YP_601322.1| recombination factor protein RarA [Streptococcus pyogenes MGAS2096]
 gi|94542842|gb|ABF32891.1| ATPase, AAA family [Streptococcus pyogenes MGAS9429]
 gi|94546731|gb|ABF36778.1| ATPase, AAA family [Streptococcus pyogenes MGAS2096]
          Length = 422

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+T+ E  GQ       K+     +A    L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPKTISEVIGQKHLVGEGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTRYA 66

Query: 82  FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +  + +K       + A     L    VL +DEIHRL    ++ L P +E+  + +
Sbjct: 67  FRTFNATIDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLENGTI-I 121

Query: 137 MVG 139
           M+G
Sbjct: 122 MIG 124


>gi|71904346|ref|YP_281149.1| recombination factor protein RarA [Streptococcus pyogenes MGAS6180]
 gi|139474470|ref|YP_001129186.1| recombination factor protein RarA [Streptococcus pyogenes str.
           Manfredo]
 gi|306826574|ref|ZP_07459881.1| AAA family ATPase [Streptococcus pyogenes ATCC 10782]
 gi|71803441|gb|AAX72794.1| ATPase, AAA family [Streptococcus pyogenes MGAS6180]
 gi|134272717|emb|CAM30989.1| putative ATPase [Streptococcus pyogenes str. Manfredo]
 gi|304431212|gb|EFM34214.1| AAA family ATPase [Streptococcus pyogenes ATCC 10782]
          Length = 422

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+T+ E  GQ       K+     +A    L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPKTISEVIGQKHLVGEGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTRYA 66

Query: 82  FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +  + +K       + A     L    VL +DEIHRL    ++ L P +E+  + +
Sbjct: 67  FRTFNATIDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLENGTI-I 121

Query: 137 MVG 139
           M+G
Sbjct: 122 MIG 124


>gi|317047548|ref|YP_004115196.1| AAA ATPase central domain-containing protein [Pantoea sp. At-9b]
 gi|316949165|gb|ADU68640.1| AAA ATPase central domain protein [Pantoea sp. At-9b]
          Length = 449

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 64/132 (48%), Gaps = 15/132 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP TL ++ GQ   + A   L   IEA       L  ++  GPPG GKTTLA+++A   
Sbjct: 21  MRPVTLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEIIAHYG 75

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             +       TSG   I +A + A     +  R +LF+DE+HR +   ++   P +ED  
Sbjct: 76  KADVERISAVTSGVKEIREAIERARQNRQVGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 135

Query: 134 LDLM--VGEGPS 143
           +  +    E PS
Sbjct: 136 ITFIGATTENPS 147


>gi|254496577|ref|ZP_05109445.1| recombination factor protein RarA [Legionella drancourtii LLAP12]
 gi|254354201|gb|EET12868.1| recombination factor protein RarA [Legionella drancourtii LLAP12]
          Length = 432

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 75/322 (23%), Positives = 131/322 (40%), Gaps = 49/322 (15%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           LLRP+ +++  GQ     + K    +   R   L  ++  GPPG+GKTT+A + A     
Sbjct: 15  LLRPKHIDDVIGQSHLLGDGKPLRLSFLGRK--LHSMILWGPPGVGKTTIAHITAAAFEC 72

Query: 81  NFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
            + + S  V +   D+ A +   ++        +LFIDEIHR +   ++ L P  E   L
Sbjct: 73  EWIALSA-VFSGVKDIRAAMERAQENLAQGKHTILFIDEIHRFNKAQQDALLPYTES-GL 130

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
              +G      S ++N    + + +  +V +L  PL +             E+LK + Q+
Sbjct: 131 VTFIGATTENPSFEVN----SALLSRAQVYVL-KPLTN-------------EELKQLFQK 172

Query: 195 G--AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
              A L+ ++  D A   +   + G  R   RLL  V        A  I +   +  +  
Sbjct: 173 AHQAVLSHISFDDAAVAIVIDYADGDAR---RLLNCVEQLQTACTAMNINQVDKEFVINS 229

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ--QGFI 310
           LA +   FD+              GG    + ISA     R +  D    ++ +   G +
Sbjct: 230 LAQNTRRFDK--------------GGENFYDQISALHKSVRGSDPDAALYWLCRMLDGGV 275

Query: 311 QRTPRGRLLMPIAWQHLGIDIP 332
                 R ++ +AW+ +G+  P
Sbjct: 276 DPHYLARRIVRMAWEDIGLADP 297


>gi|323498307|ref|ZP_08103309.1| recombination factor protein RarA [Vibrio sinaloensis DSM 21326]
 gi|323316735|gb|EGA69744.1| recombination factor protein RarA [Vibrio sinaloensis DSM 21326]
          Length = 448

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 64/147 (43%), Gaps = 9/147 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ +E++ GQ       K    A +A    +  ++  GPPG GKTTLA+V A      
Sbjct: 21  MRPQNIEQYIGQQHILGEGKPLRRALEA--GHVHSMILWGPPGTGKTTLAEVAANYANAE 78

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-----RDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
               S          AA+    E+     R +LF+DE+HR +   ++   P +ED  +  
Sbjct: 79  VERVSAVTSGVKEIRAAIEKARENKRAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVTF 138

Query: 137 M--VGEGPSARSVKINLSRFTLIAATT 161
           +    E PS       LSR  +   T+
Sbjct: 139 IGATTENPSFELNNALLSRARVYKLTS 165


>gi|291295124|ref|YP_003506522.1| AAA ATPase central domain-containing protein [Meiothermus ruber DSM
           1279]
 gi|290470083|gb|ADD27502.1| AAA ATPase central domain protein [Meiothermus ruber DSM 1279]
          Length = 432

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 66/129 (51%), Gaps = 13/129 (10%)

Query: 22  LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP TL++  GQ         L+  +E  +     L   +  GPPG GKTTLA+++A+ +
Sbjct: 21  LRPTTLDDVVGQEHLTGPGKPLRRMLETQR-----LSSFILWGPPGSGKTTLARLMAQGV 75

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           G    + S  V A   D+  ++   +++   VLF+DEIHR +   ++ L P +E   L L
Sbjct: 76  GRAMVALSA-VNAGLKDIKEVVAQAQEQGGLVLFLDEIHRFNKAQQDALLPHVESGLLTL 134

Query: 137 M--VGEGPS 143
           +    E PS
Sbjct: 135 IGATTENPS 143


>gi|258646786|ref|ZP_05734255.1| ATP-dependent protease, Lon family [Dialister invisus DSM 15470]
 gi|260404214|gb|EEW97761.1| ATP-dependent protease, Lon family [Dialister invisus DSM 15470]
          Length = 638

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 86/328 (26%), Positives = 129/328 (39%), Gaps = 74/328 (22%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE- 77
           +++++P TL E  GQ +A   L     A+K  +    H++  GPPG+GKTT A++V  E 
Sbjct: 170 MNVVKPGTLSEIVGQNDAVKAL-----ASKIASPYPQHLILYGPPGVGKTTAARLVLEEA 224

Query: 78  ---------------------LGVNFRSTSGPVIAKAGD---------LA---------A 98
                                L  + R  + P+I    D         LA          
Sbjct: 225 KKTAWSAFGENAPFVECDGTTLRWDSRDITNPLIGSVHDPIYQGAQRELADDGIPEPKPG 284

Query: 99  LLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED----FQLDLMVGEGPSARSVKINLSR- 153
           L+T+     +LFIDEI  L  I+   L   +ED    F+      E P   +    L R 
Sbjct: 285 LVTDAHG-GILFIDEIGELDPILLNKLLKVLEDKRVPFESAYYDEENPYVPAYIKKLFRD 343

Query: 154 -----FTLIAATTRVGLLTNP-----LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAV 203
                F LI ATTR     NP       + F  P+R      ED++TIV+  A+   +++
Sbjct: 344 GAPADFILIGATTREPQEINPAIRSRCAEVFFEPLRP-----EDVETIVKNAAEKLKVSL 398

Query: 204 TD---EAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI----ADAALLRLAID 256
            D   E   E  M  R    +       V   A  A    I+REI    A  + L ++  
Sbjct: 399 EDGVAEMISEYTMEGRKAVNLLADAYSLVVYEAGGAGKNFISREIMRRTARGSRLTVSHH 458

Query: 257 KMGFDQLDLRYLTMIA-RNFGGGPVGIE 283
           KM  D  ++ ++  +    F G  + IE
Sbjct: 459 KMASDVPEVGHVFGLGVSGFSGSTIEIE 486


>gi|300770508|ref|ZP_07080387.1| AAA family ATPase [Sphingobacterium spiritivorum ATCC 33861]
 gi|300762984|gb|EFK59801.1| AAA family ATPase [Sphingobacterium spiritivorum ATCC 33861]
          Length = 439

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 67/143 (46%), Gaps = 16/143 (11%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR +  + GQ        V   A +     +  ++  GPPG+GKTTLA ++A+ L   
Sbjct: 24  MRPRNIVGYVGQEHIVGEGAVLRNALEQNN--IPSMILWGPPGVGKTTLALLMAKALDRP 81

Query: 82  FRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           F S S           VI KA  L       +++ +LFIDEIHR S   ++ L  A+E  
Sbjct: 82  FFSLSAIQSGVKDIREVIEKADQLQKF---NQEQPILFIDEIHRFSKSQQDSLLGAVERG 138

Query: 133 QLDLM--VGEGPSARSVKINLSR 153
            + L+    E PS   +   LSR
Sbjct: 139 LVTLIGATTENPSFEVISALLSR 161


>gi|227431371|ref|ZP_03913423.1| crossover junction endodeoxyribonuclease [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
 gi|227352881|gb|EEJ43055.1| crossover junction endodeoxyribonuclease [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
          Length = 428

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 5/111 (4%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  +EE  GQ       K+      A    L  ++  GPPG GKT++A  +A      
Sbjct: 10  MRPTKIEEIVGQQHLVGEGKIIWRMVAAHR--LSSMILYGPPGTGKTSIASAIAGSSKYA 67

Query: 82  FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           FR  +    ++  DL  ++    +    VL +DEIHRL+ I ++ L P +E
Sbjct: 68  FRMLNAATDSQK-DLQIVVEEAKMSGTVVLLLDEIHRLNKIKQDFLLPHLE 117


>gi|149190994|ref|ZP_01869255.1| hypothetical protein VSAK1_00065 [Vibrio shilonii AK1]
 gi|148835128|gb|EDL52104.1| hypothetical protein VSAK1_00065 [Vibrio shilonii AK1]
          Length = 452

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 67/151 (44%), Gaps = 17/151 (11%)

Query: 22  LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP  +E++ GQ         L+  +EA +     L  ++  GPPG GKTTLA+V A   
Sbjct: 21  MRPENVEQYIGQQHILGVGKPLRRALEAGQ-----LHSMILWGPPGTGKTTLAEVAANYA 75

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDF 132
                  S  V +   D+ A +    +      R +LF+DE+HR +   ++   P +ED 
Sbjct: 76  DAEVERVSA-VTSGVKDIRAAIERARENKLAGKRTILFVDEVHRFNKSQQDAFLPHIEDG 134

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATT 161
            +  +    E PS       LSR  +   T+
Sbjct: 135 TVTFIGATTENPSFELNNALLSRARVYKLTS 165


>gi|227538998|ref|ZP_03969047.1| recombination ATPase [Sphingobacterium spiritivorum ATCC 33300]
 gi|227241201|gb|EEI91216.1| recombination ATPase [Sphingobacterium spiritivorum ATCC 33300]
          Length = 439

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 67/143 (46%), Gaps = 16/143 (11%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR +  + GQ        V   A +     +  ++  GPPG+GKTTLA ++A+ L   
Sbjct: 24  MRPRNIVGYVGQEHIVGEGAVLRNALEQNN--IPSMILWGPPGVGKTTLALLMAKALDRP 81

Query: 82  FRSTSG---------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           F S S           VI KA  L       +++ +LFIDEIHR S   ++ L  A+E  
Sbjct: 82  FFSLSAIQSGVKDIREVIEKADQLQKF---NQEQPILFIDEIHRFSKSQQDSLLGAVERG 138

Query: 133 QLDLM--VGEGPSARSVKINLSR 153
            + L+    E PS   +   LSR
Sbjct: 139 LVTLIGATTENPSFEVISALLSR 161


>gi|187736155|ref|YP_001878267.1| ATPase AAA [Akkermansia muciniphila ATCC BAA-835]
 gi|187426207|gb|ACD05486.1| AAA ATPase central domain protein [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 463

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 66/142 (46%), Gaps = 15/142 (10%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP  LE+  GQ         L++  ++ K     +   +  GPPG GKTTLA+++A   
Sbjct: 26  LRPSALEDIMGQDHLLGEGGPLRLMADSGK-----MTSFILWGPPGCGKTTLARILATRT 80

Query: 79  GVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
            ++F + S        + KA D AA         +LF+DEIHR +   ++   P +E+  
Sbjct: 81  SMHFAALSAVFSGMADLRKAFDEAARRREYGHGTLLFVDEIHRFNRAQQDGFLPYVENGT 140

Query: 134 LDLM--VGEGPSARSVKINLSR 153
           + L+    E PS       LSR
Sbjct: 141 VTLVGATTENPSFELNSALLSR 162


>gi|322377488|ref|ZP_08051979.1| ATPase, AAA family [Streptococcus sp. M334]
 gi|321281688|gb|EFX58697.1| ATPase, AAA family [Streptococcus sp. M334]
          Length = 423

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+T+++  GQ       K+     +A    L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPKTIDQVIGQEHLVGQGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTKYA 66

Query: 82  FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +  V +K       + A     L    VL +DEIHRL    ++ L P +E   L +
Sbjct: 67  FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121

Query: 137 MVG 139
           M+G
Sbjct: 122 MIG 124


>gi|325526164|gb|EGD03808.1| recombination factor protein RarA [Burkholderia sp. TJI49]
          Length = 251

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 113/257 (43%), Gaps = 38/257 (14%)

Query: 22  LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP +L++  GQ     A   L+   E+ K  +     ++F GPPG+GKTTLA++ A+  
Sbjct: 17  LRPASLDDVIGQTHLLGAGMPLRRAFESGKPHS-----MIFWGPPGVGKTTLARLTAQAF 71

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V+    D+ A     +        R ++F+DEIHR +   +  L P++  
Sbjct: 72  DCAFVALSA-VLGGVKDIRAATARAQQAFDGAGRRTIVFVDEIHRFNDTQQAALLPSVAS 130

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
             + + +G      S ++N    + + +  +V +L +           LN  E+  L   
Sbjct: 131 GAV-IFIGATTENPSFEVN----SALLSRAQVYVLQS-----------LNDDEMRQLLRR 174

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
            Q  A L GLA  D+A   +   + G  R    LL + +  A  A   TI  +   +A+ 
Sbjct: 175 AQEIA-LDGLAFDDKAVDTLVGYADGDARRFLNLLEQAQTAAASAGVTTIDADFVSSAMT 233

Query: 252 RLA--IDKMG---FDQL 263
             A   DK G   +DQ+
Sbjct: 234 LNARRFDKGGDNFYDQI 250


>gi|56963348|ref|YP_175079.1| recombination factor protein RarA [Bacillus clausii KSM-K16]
 gi|56909591|dbj|BAD64118.1| AAA family ATPase [Bacillus clausii KSM-K16]
          Length = 420

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 59/119 (49%), Gaps = 4/119 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP ++EE  GQ        +     KA    L  ++  GPPG GKT++A+ +A   G++
Sbjct: 10  MRPTSVEEVIGQHSLLGEGMMLSRMIKA--NQLSSMVLYGPPGTGKTSIARAIAGSSGMH 67

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
           FR  +  V  K   + A     +    +L +DE+HRL    ++ L P +E   L L++G
Sbjct: 68  FRMLNATVHHKKDMETAVEEAKMYGSLLLILDEVHRLDKAKQDFLLPHLESGLL-LLIG 125


>gi|332993165|gb|AEF03220.1| recombination factor protein RarA [Alteromonas sp. SN2]
          Length = 444

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 57/117 (48%), Gaps = 13/117 (11%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP T++E+ GQ         L+  +EA    +     ++  GPPG GKTTLA+++A   
Sbjct: 19  MRPVTIDEYAGQSHLLGTNKPLRKMLEAGHCHS-----MILWGPPGTGKTTLAELIATYT 73

Query: 79  GVNF----RSTSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
             +       TSG   I  A D A   +    R +LF+DE+HR +   ++   P +E
Sbjct: 74  NASVIRISAVTSGVKDIRAAMDAAKENSRYNQRTLLFVDEVHRFNKSQQDAFLPFVE 130


>gi|30913228|sp|O74111|RFC3_ARXAD RecName: Full=Replication factor C subunit 3; Short=Replication
          factor C3; AltName: Full=Activator 1 subunit 3
 gi|3367626|emb|CAA07618.1| replication factor C subunit [Blastobotrys adeninivorans]
          Length = 338

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 37/63 (58%), Gaps = 6/63 (9%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81
          RP TL+E  G     + +K F+E  K     L H+LF GPPG GKTT    VAR++ G N
Sbjct: 24 RPTTLDEVAGHEGVITTIKKFVEEGK-----LPHLLFHGPPGTGKTTTIIAVARQIYGKN 78

Query: 82 FRS 84
          +R+
Sbjct: 79 YRN 81


>gi|307710680|ref|ZP_07647109.1| ATPase family associated with various cellular activities (AAA)
           family protein [Streptococcus mitis SK321]
 gi|307617451|gb|EFN96622.1| ATPase family associated with various cellular activities (AAA)
           family protein [Streptococcus mitis SK321]
          Length = 404

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+T+++  GQ       K+     +A    L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPKTIDQVIGQEHLVGQGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTKYA 66

Query: 82  FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +  V +K       + A     L    VL +DEIHRL    ++ L P +E   L +
Sbjct: 67  FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLII 121

Query: 137 MVG 139
           M+G
Sbjct: 122 MIG 124


>gi|288958714|ref|YP_003449055.1| ATPase [Azospirillum sp. B510]
 gi|288911022|dbj|BAI72511.1| ATPase [Azospirillum sp. B510]
          Length = 439

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 61/130 (46%), Gaps = 11/130 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPRTL+E  GQ               AR   L  ++  GPPG GKTT+A+++A    ++
Sbjct: 26  LRPRTLDEVVGQDHLLKPDGPLGRMVAARR--LASMILWGPPGCGKTTIARLLAHSTDLH 83

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F   S  V +   DL  +      R       +LFIDEIHR +   ++   P +ED  + 
Sbjct: 84  FEPLSA-VFSGVADLRKVFDAARARRAAGQGTLLFIDEIHRFNRSQQDGFLPFVEDGTVT 142

Query: 136 LM--VGEGPS 143
           L+    E PS
Sbjct: 143 LVGATTENPS 152


>gi|269967796|ref|ZP_06181843.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|269827616|gb|EEZ81903.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 449

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 64/147 (43%), Gaps = 9/147 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP T+E++ GQ       K    A +A    +  ++  GPPG GKTTLA+V A      
Sbjct: 21  MRPETIEQYIGQQHILGLGKPLRRALEAGH--IHSMILWGPPGTGKTTLAEVAANYANAE 78

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-----RDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
               S          AA+    E+     R +LF+DE+HR +   ++   P +ED  +  
Sbjct: 79  VERVSAVTSGVKEIRAAIEKARENKMAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVTF 138

Query: 137 M--VGEGPSARSVKINLSRFTLIAATT 161
           +    E PS       LSR  +   T+
Sbjct: 139 IGATTENPSFELNNALLSRARVYKLTS 165


>gi|312132192|ref|YP_003999532.1| aaa atpase central domain protein [Leadbetterella byssophila DSM
           17132]
 gi|311908738|gb|ADQ19179.1| AAA ATPase central domain protein [Leadbetterella byssophila DSM
           17132]
          Length = 422

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 67/136 (49%), Gaps = 7/136 (5%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR L+E+ GQ       K   +A ++    L  ++  GPPG+GKT+LA ++A      
Sbjct: 11  IRPRNLDEYVGQEHILGPGKPLRKAIESGM--LPSMILWGPPGVGKTSLAFLIAEVSKRQ 68

Query: 82  FRSTSGPVIAKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137
           F + S  + A   DL  +L         +LFIDEIHR +   ++ L  A+E  ++ L+  
Sbjct: 69  FHNLSA-ISAGVKDLREVLARPSGLFPPILFIDEIHRFNKSQQDALLGAVEKGKVTLIGA 127

Query: 138 VGEGPSARSVKINLSR 153
             E PS       LSR
Sbjct: 128 TTENPSFEVNSALLSR 143


>gi|307728952|ref|YP_003906176.1| AAA ATPase central domain-containing protein [Burkholderia sp.
           CCGE1003]
 gi|307583487|gb|ADN56885.1| AAA ATPase central domain protein [Burkholderia sp. CCGE1003]
          Length = 437

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 115/261 (44%), Gaps = 48/261 (18%)

Query: 22  LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPR ++E  GQ         L+V  E+ +A +     ++  GPPG+GKTTLA+++A   
Sbjct: 15  LRPRNIDEVIGQKHLLGPNKPLRVAFESGQAHS-----MILWGPPGVGKTTLARLMADAF 69

Query: 79  GVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
              F + S  +     I +A + A +      + ++F+DE+HR +   ++   P +E   
Sbjct: 70  HAQFIALSAVLSGVKDIREAVETAQVHRANGHQTLVFVDEVHRFNKSQQDAFLPHVES-G 128

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           L + VG      S ++N +  +  A                     L   + ++L+ ++ 
Sbjct: 129 LFVFVGATTENPSFEVNSALLSRAAVYV------------------LKSLDEDELRELLA 170

Query: 194 RGA-KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           R   +L GL  TDEA   +   + G  R   +LL  +   A  A  +  T EI D ALL 
Sbjct: 171 RAQHELGGLTFTDEARDALIGSADGDGR---KLLNNLEIVARAASQQKTT-EI-DGALLG 225

Query: 253 LAI-------DKMG---FDQL 263
            A+       DK G   +DQ+
Sbjct: 226 SALAENLRRFDKGGDAFYDQI 246


>gi|238784518|ref|ZP_04628526.1| Replication-associated recombination protein A [Yersinia bercovieri
           ATCC 43970]
 gi|238714581|gb|EEQ06585.1| Replication-associated recombination protein A [Yersinia bercovieri
           ATCC 43970]
          Length = 444

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 63/129 (48%), Gaps = 9/129 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP TL+++ GQ    +  K    A  A    L  ++  GPPG GKTTLA+++ R    +
Sbjct: 17  MRPLTLDQYIGQQHLLAAGKPLPRAIVA--GQLHSMILWGPPGTGKTTLAEIIGRYGQAD 74

Query: 82  FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
                  TSG   I +A + A    +   R +LF+DE+HR +   ++   P +ED  +  
Sbjct: 75  VERISAVTSGIKEIREAIERARQNRDAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 134

Query: 137 M--VGEGPS 143
           +    E PS
Sbjct: 135 IGATTENPS 143


>gi|119503243|ref|ZP_01625327.1| hypothetical protein MGP2080_11283 [marine gamma proteobacterium
           HTCC2080]
 gi|119460889|gb|EAW41980.1| hypothetical protein MGP2080_11283 [marine gamma proteobacterium
           HTCC2080]
          Length = 444

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 66/145 (45%), Gaps = 17/145 (11%)

Query: 20  SLLRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           S LRP +L  F GQ       + L + +EA       L   L  GPPG+GKTTLA++ A 
Sbjct: 21  SRLRPSSLASFVGQEHILGPDAPLAMALEAGN-----LHSFLLWGPPGVGKTTLARLCAG 75

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130
                F   S  V++   ++  ++ +         R VLF+DE+HR +   ++   P +E
Sbjct: 76  TAKAQFYPISA-VLSGVKEIRQVIESARVGLSQGLRTVLFVDEVHRFNKAQQDAFLPHVE 134

Query: 131 DFQLDLM--VGEGPSARSVKINLSR 153
           D  +  +    E PS       LSR
Sbjct: 135 DGTITFIGATTENPSFEVNAALLSR 159


>gi|56807432|ref|ZP_00365394.1| COG2256: ATPase related to the helicase subunit of the Holliday
           junction resolvase [Streptococcus pyogenes M49 591]
          Length = 353

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+T+ E  GQ       K+     +A    L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPKTISEVIGQKHLVGEGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTRYA 66

Query: 82  FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +  + +K       + A     L    VL +DEIHRL    ++ L P +E+  + +
Sbjct: 67  FRTFNATIDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLENGTI-I 121

Query: 137 MVG 139
           M+G
Sbjct: 122 MIG 124


>gi|320100774|ref|YP_004176366.1| replication factor C large subunit [Desulfurococcus mucosus DSM
          2162]
 gi|319753126|gb|ADV64884.1| replication factor C large subunit [Desulfurococcus mucosus DSM
          2162]
          Length = 425

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 32/60 (53%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
          RPRTLEEF  Q EA   L  ++E+ +         L  GPPG GKT+L + VAR  G   
Sbjct: 13 RPRTLEEFEDQEEAKEKLIAWLESWEKGVPGKKAALLHGPPGCGKTSLVEAVARSKGYQL 72


>gi|326318084|ref|YP_004235756.1| Holliday junction DNA helicase RuvB domain-containing protein
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323374920|gb|ADX47189.1| Holliday junction DNA helicase RuvB domain protein [Acidovorax
           avenae subsp. avenae ATCC 19860]
          Length = 147

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 15/113 (13%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP +L+E  GQ         L++  E+ K  +     ++F GPPG+GKTTLA++ A   
Sbjct: 17  LRPASLDEVIGQSHLLGEGKPLRLAFESGKPHS-----MIFWGPPGVGKTTLARLTATAF 71

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEIL 125
              F + S  V +   D+ A +   +         +LF+DEIHR +  V   +
Sbjct: 72  ECEFIALSA-VFSGVKDIRAAMDQAQHNLAMGKHTILFVDEIHRFNKAVNHFI 123


>gi|221213645|ref|ZP_03586619.1| ATPase, AAA family [Burkholderia multivorans CGD1]
 gi|221166434|gb|EED98906.1| ATPase, AAA family [Burkholderia multivorans CGD1]
          Length = 436

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 59/118 (50%), Gaps = 14/118 (11%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL +  GQ         L++  E+ K  +     ++  GPPG+GKTTLA++ A   
Sbjct: 17  LRPKTLGDVIGQTHLLGEGKPLRLAFESGKPHS-----MILWGPPGVGKTTLARLTALAF 71

Query: 79  GVNFRSTSGPV-----IAKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAME 130
              F + S  +     I +A D A    N   R  +LF+DEIHR +   ++ L P +E
Sbjct: 72  DCEFIALSAVLGGVKDIREAMDQAKETLNRTGRHTILFVDEIHRFNKGQQDALLPFVE 129


>gi|168486363|ref|ZP_02710871.1| ATPase, AAA family [Streptococcus pneumoniae CDC1087-00]
 gi|183570586|gb|EDT91114.1| ATPase, AAA family [Streptococcus pneumoniae CDC1087-00]
          Length = 423

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+T+++  GQ       K+     +A    L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPKTIDQVIGQEHLVGPGKIIRRMVEANC--LSSMILYGPPGIGKTSIASAIAGTTKYA 66

Query: 82  FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +  V +K       + A     L    VL +DEIHRL    ++ L P +E   L +
Sbjct: 67  FRTFNATVDSKKRLQEISEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121

Query: 137 MVG 139
           M+G
Sbjct: 122 MIG 124


>gi|50121569|ref|YP_050736.1| recombination factor protein RarA [Pectobacterium atrosepticum
           SCRI1043]
 gi|49612095|emb|CAG75545.1| putative ATPase [Pectobacterium atrosepticum SCRI1043]
          Length = 447

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 63/132 (47%), Gaps = 15/132 (11%)

Query: 22  LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP TL ++ GQ     A   L   IEA +     L  ++  GPPG GKTTLA+++    
Sbjct: 20  MRPATLAQYIGQQHLLGAGKPLPRAIEAGQ-----LHSMILWGPPGTGKTTLAELIGHYG 74

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             +       TSG   I +A + A    N   R +LF+DE+HR +   ++   P +ED  
Sbjct: 75  QADVERISAVTSGIKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134

Query: 134 LDLM--VGEGPS 143
           +  +    E PS
Sbjct: 135 ITFIGATTENPS 146


>gi|323525162|ref|YP_004227315.1| MgsA AAA+ ATPase-like protein [Burkholderia sp. CCGE1001]
 gi|323382164|gb|ADX54255.1| MgsA AAA+ ATPase-like protein [Burkholderia sp. CCGE1001]
          Length = 437

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 68/261 (26%), Positives = 116/261 (44%), Gaps = 48/261 (18%)

Query: 22  LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPR ++E  GQ         L+V  E+ +A +     ++  GPPG+GKTTLA+++A   
Sbjct: 15  LRPRNIDEVIGQKHLLGPNKPLRVAFESGEAHS-----MILWGPPGVGKTTLARLMADAF 69

Query: 79  GVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
              F + S  +     I +A + A +      + ++F+DE+HR +   ++   P +E   
Sbjct: 70  HAQFIALSAVLSGVKDIREAVETAQIHRANGHQTLVFVDEVHRFNKSQQDAFLPHVES-G 128

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           L + +G      S ++N +  +  A                     L   + ++L+ +++
Sbjct: 129 LFVFIGATTENPSFEVNSALLSRAAVYV------------------LKSLDEDELRELLE 170

Query: 194 RGA-KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           R   +L GL  TDEA   +   + G  R   +LL  +   A  A  +  T EI D ALL 
Sbjct: 171 RAQHELGGLTFTDEARDALIGSADGDGR---KLLNNLEIVARAASQQKKT-EI-DGALLG 225

Query: 253 LAI-------DKMG---FDQL 263
            A+       DK G   +DQ+
Sbjct: 226 SALAENLRRFDKGGDAFYDQI 246


>gi|118086471|ref|XP_001232269.1| PREDICTED: similar to Werner helicase interacting protein 1 isoform
           1 [Gallus gallus]
          Length = 537

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 61/110 (55%), Gaps = 19/110 (17%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75
           LRP TL ++ GQ   + A + L+  +E+ +     +  ++  GPPG GKTTLA ++A   
Sbjct: 127 LRPDTLRDYVGQERVLGAHTLLRSLLESHE-----IPSLILWGPPGCGKTTLAHIIANSS 181

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLS 118
           ++ G+ F + S    AK  D+  +++  ++       + +LFIDEIHR +
Sbjct: 182 KKKGMRFVTLSA-TSAKTNDVRDVISQAQNEKRLFKRKTILFIDEIHRFN 230


>gi|119194249|ref|XP_001247728.1| hypothetical protein CIMG_01499 [Coccidioides immitis RS]
          Length = 535

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/148 (33%), Positives = 70/148 (47%), Gaps = 18/148 (12%)

Query: 22  LRPRTLEEFTGQVEACSN--LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +RPRTL+E  GQ     N  L+  IEA +     +  ++  G  G GKTT+A+V+A  +G
Sbjct: 129 MRPRTLDEVCGQELVGQNGVLRGLIEADR-----VPSMILWGGAGTGKTTIARVIATMVG 183

Query: 80  VNF---RSTSGPVIAKAGDLAALLTNLE---DRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             F    STS  V       A     L     + ++F DEIHR S   +++    +E  Q
Sbjct: 184 SRFVEINSTSSGVAECKKIFAEARNELRLAGRKTIIFCDEIHRFSKSQQDVFLGPVESGQ 243

Query: 134 LDLM--VGEGPSARSVKINLSR---FTL 156
           + L+    E PS +     LSR   FTL
Sbjct: 244 VTLIGATTENPSFKVQNALLSRCRTFTL 271


>gi|168066656|ref|XP_001785250.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162663155|gb|EDQ49936.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 498

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 9/115 (7%)

Query: 51  AEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLED 105
           A +L  ++F GPPG GKT+L Q +AR +   F + S        + +  + A  L    +
Sbjct: 111 ANSLSSIIFWGPPGTGKTSLVQTIARAVSYRFVALSAVSSGLKEVRETLEEAKRLQKFGE 170

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN---LSRFTLI 157
           R +L +DEIHR +    ++  P +E   + +++G      S +IN   LSR  ++
Sbjct: 171 RTLLLLDEIHRFNKAQLDVFLPCVEAGHI-VLIGATTENPSFEINAALLSRCKVL 224


>gi|332526025|ref|ZP_08402163.1| recombination factor protein RarA [Rubrivivax benzoatilyticus JA2]
 gi|332109868|gb|EGJ10496.1| recombination factor protein RarA [Rubrivivax benzoatilyticus JA2]
          Length = 447

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 67/146 (45%), Gaps = 17/146 (11%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP TL E  GQ         L+V  E+ +     +  ++  GPPG+GKTTLA++VA  +
Sbjct: 32  LRPHTLAEVIGQQHLLGPGRPLRVAFESGR-----IPSMILWGPPGVGKTTLARLVAGSV 86

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMED- 131
              F   S  V+A   D+   +   +D        V+F+DE+HR +   ++   P +E  
Sbjct: 87  DAQFLVLSA-VLAGVKDIRDAVELAKDARRRGQATVVFVDEVHRFNKAQQDAFLPHVESG 145

Query: 132 -FQLDLMVGEGPSARSVKINLSRFTL 156
            F       E PS       LSR T+
Sbjct: 146 LFTFIGATTENPSFEVNSALLSRATV 171


>gi|116328835|ref|YP_798555.1| recombination factor protein RarA [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116331744|ref|YP_801462.1| recombination factor protein RarA [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
 gi|116121579|gb|ABJ79622.1| Holliday junction resolvase helicase subunit-like ATPase
           [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116125433|gb|ABJ76704.1| Holliday junction resolvase helicase subunit-like ATPase
           [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
          Length = 423

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 63/140 (45%), Gaps = 13/140 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP   EE  GQ  A   L  +             ++  GPPG GK+TLA ++ R+  + 
Sbjct: 17  IRPSGFEEVIGQTRATKQLVNYRSPVS--------IILYGPPGTGKSTLAGILCRKWNLP 68

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137
           F   +  V     ++  LL   E     +LF+DEIHR S   ++ L   +E   L L+  
Sbjct: 69  FVEYNA-VSTGVSEIKKLLERAEREGTILLFLDEIHRFSASQQDSLLKGVETGHLVLIGA 127

Query: 138 VGEGPSARSVKINLSRFTLI 157
             E P+ R  +  LSR  ++
Sbjct: 128 TTENPAFRITRPLLSRCQIL 147


>gi|28210750|ref|NP_781694.1| recombination factor protein RarA [Clostridium tetani E88]
 gi|28203188|gb|AAO35631.1| ATPase associated with chromosome architecture/replication
           [Clostridium tetani E88]
          Length = 427

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 10/142 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L+E  GQ       K+        +E L +++F GPPG GKTT+A ++A      
Sbjct: 10  IRPKILDEVFGQKHILGQGKILRRII--NSEKLTNMIFYGPPGTGKTTVANIIANRTNKT 67

Query: 82  FRSTSGPVIAKAGDLAALLTNLE-----DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
               +    A   D+  ++ +L+     +  VL++DEI   +   ++ L   ME  Q+ L
Sbjct: 68  LYKLNA-TNASLADIKNIIADLDSFMGVEGVVLYLDEIQNFNKKQQQSLLEFMEKGQITL 126

Query: 137 MVG--EGPSARSVKINLSRFTL 156
           +    E P     K  LSR T+
Sbjct: 127 IASTTENPYHYIYKAILSRATI 148


>gi|269139542|ref|YP_003296243.1| putative DNA recombination-associated ATPase RarA [Edwardsiella
           tarda EIB202]
 gi|267985203|gb|ACY85032.1| putative DNA recombination-associated ATPase RarA [Edwardsiella
           tarda EIB202]
 gi|304559431|gb|ADM42095.1| AAA family ATPase [Edwardsiella tarda FL6-60]
          Length = 447

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 64/129 (49%), Gaps = 9/129 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR----E 77
           +RP  LE++ GQ    +  K    A  A    L  ++  GPPG GKTTLA+++AR    E
Sbjct: 20  MRPTALEQYIGQRHLLAAGKPLPRAILA--GHLHSMILWGPPGTGKTTLAELIARYGHAE 77

Query: 78  LGVNFRSTSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           +      TSG   I +A + A    +   R +LF+DE+HR +   ++   P +ED  +  
Sbjct: 78  VERISAVTSGIKEIREAIERARHNRDAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 137

Query: 137 M--VGEGPS 143
           +    E PS
Sbjct: 138 IGATTENPS 146


>gi|254294413|ref|YP_003060436.1| recombination factor protein RarA [Hirschia baltica ATCC 49814]
 gi|254042944|gb|ACT59739.1| AAA ATPase central domain protein [Hirschia baltica ATCC 49814]
          Length = 440

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 63/132 (47%), Gaps = 17/132 (12%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           L  N  Q  AD   LRP+TL +  GQ   + A   +   +   +     L  ++  GPPG
Sbjct: 10  LDDNAPQPLAD--RLRPKTLSDVIGQDHLIGADGPIGRMLANKR-----LASMILWGPPG 62

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLS 118
           +GKTT+AQ++A   G+ F   S  + +   DL A     E R       +LF+DEIHR +
Sbjct: 63  VGKTTIAQLLAAGAGLEFDPISA-IFSGVKDLRAAFDRAEKRRQIGKGTLLFVDEIHRFN 121

Query: 119 IIVEEILYPAME 130
              ++   P +E
Sbjct: 122 KAQQDGFLPFVE 133


>gi|229525720|ref|ZP_04415125.1| ATPase AAA family [Vibrio cholerae bv. albensis VL426]
 gi|229339301|gb|EEO04318.1| ATPase AAA family [Vibrio cholerae bv. albensis VL426]
          Length = 449

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 67/148 (45%), Gaps = 11/148 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+T++++ GQ       K    A +A    +  ++  GPPG GKTTLA+V A      
Sbjct: 21  MRPQTVDQYIGQQHILGPGKPLRRALEA--GHIHSMILWGPPGTGKTTLAEVAANYANAE 78

Query: 82  FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
               S  V +   ++ A +    +      R +LF+DE+HR +   ++   P +ED  + 
Sbjct: 79  VERVSA-VTSGVKEIRAAIEKARENKLSGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVT 137

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATT 161
            +    E PS       LSR  +   T+
Sbjct: 138 FIGATTENPSFELNNALLSRARVYKLTS 165


>gi|319945709|ref|ZP_08019960.1| AAA family ATPase [Streptococcus australis ATCC 700641]
 gi|319748069|gb|EFW00312.1| AAA family ATPase [Streptococcus australis ATCC 700641]
          Length = 423

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+T+++  GQ       K+     +A    L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPKTIDQVIGQEHLVGEGKIIRRMVEANR--LSSMILFGPPGIGKTSIASAIAGTTKYA 66

Query: 82  FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +  V +K       + A     L    VL +DEIHRL    ++ L P +E   L +
Sbjct: 67  FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121

Query: 137 MVG 139
           M+G
Sbjct: 122 MIG 124


>gi|70606693|ref|YP_255563.1| replication factor C small subunit [Sulfolobus acidocaldarius DSM
          639]
 gi|73914011|sp|Q4JAB0|RFCS_SULAC RecName: Full=Replication factor C small subunit; Short=RFC small
          subunit; AltName: Full=Clamp loader small subunit
 gi|68567341|gb|AAY80270.1| replication factor C [Sulfolobus acidocaldarius DSM 639]
          Length = 325

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 6/63 (9%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81
          RP++L+E   Q E    LK F+     + + + H+LF GPPG GKTT A  + R+L G N
Sbjct: 12 RPKSLDEIVNQKEIVERLKKFV-----KEKNMPHLLFAGPPGTGKTTAALALVRDLYGNN 66

Query: 82 FRS 84
          +R 
Sbjct: 67 YRQ 69


>gi|238795840|ref|ZP_04639353.1| Replication-associated recombination protein A [Yersinia mollaretii
           ATCC 43969]
 gi|238720303|gb|EEQ12106.1| Replication-associated recombination protein A [Yersinia mollaretii
           ATCC 43969]
          Length = 444

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 63/129 (48%), Gaps = 9/129 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP TL+++ GQ    +  K    A  A    L  ++  GPPG GKTTLA+++ R    +
Sbjct: 17  MRPLTLDQYIGQQHLLAPGKPLPRAIVA--GQLHSMILWGPPGTGKTTLAEIIGRYGQAD 74

Query: 82  FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
                  TSG   I +A + A    +   R +LF+DE+HR +   ++   P +ED  +  
Sbjct: 75  VERISAVTSGIKEIREAIERARQNRDAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 134

Query: 137 M--VGEGPS 143
           +    E PS
Sbjct: 135 IGATTENPS 143


>gi|300214751|gb|ADJ79167.1| ATPase, AAA family [Lactobacillus salivarius CECT 5713]
          Length = 423

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 60/130 (46%), Gaps = 4/130 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ +++  GQ       K+     +A+   L  ++  GPPG GKT++A  +A      
Sbjct: 8   MRPKNIDDVVGQQHLVGPGKIIRRMVEAKL--LSSMILYGPPGTGKTSIASAIAGSTKYA 65

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR  +    +K   +            +L +DEIHRL+   ++ L P +ED  + +++G 
Sbjct: 66  FRKMNAATDSKKKLEQVVEEAKFSGTVILLLDEIHRLTKPKQDFLLPHLEDGHI-ILIGA 124

Query: 141 GPSARSVKIN 150
                 + IN
Sbjct: 125 TTENPYISIN 134


>gi|303311419|ref|XP_003065721.1| ATPase, AAA family protein [Coccidioides posadasii C735 delta
           SOWgp]
 gi|240105383|gb|EER23576.1| ATPase, AAA family protein [Coccidioides posadasii C735 delta
           SOWgp]
 gi|320039584|gb|EFW21518.1| AAA family ATPase [Coccidioides posadasii str. Silveira]
          Length = 535

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/148 (33%), Positives = 70/148 (47%), Gaps = 18/148 (12%)

Query: 22  LRPRTLEEFTGQVEACSN--LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +RPRTL+E  GQ     N  L+  IEA +     +  ++  G  G GKTT+A+V+A  +G
Sbjct: 129 MRPRTLDEVCGQELVGQNGVLRGLIEADR-----VPSMILWGGAGTGKTTIARVIATMVG 183

Query: 80  VNF---RSTSGPVIAKAGDLAALLTNLE---DRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             F    STS  V       A     L     + ++F DEIHR S   +++    +E  Q
Sbjct: 184 SRFVEINSTSSGVAECKKIFAEARNELRLAGRKTIIFCDEIHRFSKSQQDVFLGPVESGQ 243

Query: 134 LDLM--VGEGPSARSVKINLSR---FTL 156
           + L+    E PS +     LSR   FTL
Sbjct: 244 VTLIGATTENPSFKVQNALLSRCRTFTL 271


>gi|239637567|ref|ZP_04678539.1| recombination factor protein RarA [Staphylococcus warneri L37603]
 gi|239596785|gb|EEQ79310.1| recombination factor protein RarA [Staphylococcus warneri L37603]
          Length = 423

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 81/172 (47%), Gaps = 17/172 (9%)

Query: 54  LDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALL--TNLEDRDVLFI 111
           L  ++F GPPG+GKT++A+ +A      FR  +  V     D+  ++    +  + +L +
Sbjct: 40  LSSMIFYGPPGIGKTSIAKAIAGSTQYKFRQLNA-VTNTKKDMQMVVDEAKMSGQVILLL 98

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT-NPL 170
           DEIHRL    ++ L P +E+ ++ +++G   S     IN       A  +R  +    PL
Sbjct: 99  DEIHRLDKAKQDFLLPHLENGKI-VLIGATTSNPYHAIN------PAIRSRAQIFELYPL 151

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
            D   I + LN    +D     QRG K     V D+A    + +S+G  R A
Sbjct: 152 YDN-DIRLALNRALEDD-----QRGLKSYTPEVDDDAMTYFSTQSQGDVRSA 197


>gi|301300882|ref|ZP_07207054.1| recombination factor protein RarA [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300851481|gb|EFK79193.1| recombination factor protein RarA [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 423

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 60/130 (46%), Gaps = 4/130 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ +++  GQ       K+     +A+   L  ++  GPPG GKT++A  +A      
Sbjct: 8   MRPKNIDDVVGQQHLVGPGKIIRRMVEAKL--LSSMILYGPPGTGKTSIASAIAGSTKYA 65

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR  +    +K   +            +L +DEIHRL+   ++ L P +ED  + +++G 
Sbjct: 66  FRKMNAATDSKKKLEQVVEEAKFSGTVILLLDEIHRLTKPKQDFLLPHLEDGHI-ILIGA 124

Query: 141 GPSARSVKIN 150
                 + IN
Sbjct: 125 TTENPYISIN 134


>gi|291245127|ref|XP_002742444.1| PREDICTED: Werner helicase interacting protein-like [Saccoglossus
           kowalevskii]
          Length = 633

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 28/169 (16%)

Query: 11  NVSQEDADISLL----RPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           N  ++ AD + L    RP +L+++ GQ   +   + L+  IEA       +  ++  GPP
Sbjct: 194 NAEKKSADFAPLAEKMRPSSLDDYVGQDKVIGTNTMLRSLIEA-----NDVPSMILWGPP 248

Query: 64  GLGKTTLAQVVARELGVNFR--------STSGPVIAKAGDLAALLTN----LEDRDVLFI 111
           G GKTTLA++VA     N          S +   +++  ++  +  N     + + +LFI
Sbjct: 249 GCGKTTLARIVASNAKKNSNSRLRFVQLSATTSNVSEVREVIKIAQNEQTMFKRKTILFI 308

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN---LSRFTLI 157
           DEIHR + + ++     +E+  + L +G      S ++N   LSR  ++
Sbjct: 309 DEIHRFNKLQQDTFLMHIENGTITL-IGATTQNPSFQVNSALLSRCKVV 356


>gi|153802127|ref|ZP_01956713.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
 gi|124122320|gb|EAY41063.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
          Length = 449

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 67/148 (45%), Gaps = 11/148 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+T++++ GQ       K    A +A    +  ++  GPPG GKTTLA+V A      
Sbjct: 21  MRPQTVDQYIGQQHILGPGKPLRRALEA--GHIHSMILWGPPGTGKTTLAEVAANYANAE 78

Query: 82  FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
               S  V +   ++ A +    +      R +LF+DE+HR +   ++   P +ED  + 
Sbjct: 79  VERVSA-VTSGVKEIRAAIEKARENKLSGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVT 137

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATT 161
            +    E PS       LSR  +   T+
Sbjct: 138 FIGATTENPSFELNNALLSRARVYKLTS 165


>gi|300716072|ref|YP_003740875.1| polynucleotide ATPase [Erwinia billingiae Eb661]
 gi|299061908|emb|CAX59024.1| Putative polynucleotide ATPase protein [Erwinia billingiae Eb661]
          Length = 447

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 63/132 (47%), Gaps = 15/132 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP  L E+ GQ   + A   L   IEA       L  ++  GPPG GKTTLA+++ R  
Sbjct: 20  MRPAMLAEYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEIIGRYG 74

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             +       TSG   I +A + A    +   R +LF+DE+HR +   ++   P +ED  
Sbjct: 75  QADVERISAVTSGVKEIREAIERARQNRDAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134

Query: 134 LDLM--VGEGPS 143
           +  +    E PS
Sbjct: 135 ITFIGATTENPS 146


>gi|297526853|ref|YP_003668877.1| ATPase associated with various cellular activities AAA_3
           [Staphylothermus hellenicus DSM 12710]
 gi|297255769|gb|ADI31978.1| ATPase associated with various cellular activities AAA_3
           [Staphylothermus hellenicus DSM 12710]
          Length = 312

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 97/209 (46%), Gaps = 37/209 (17%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTS-GPVIAKAGDLAALLTNLED--------- 105
           H+L  GPPG+GKTT+A++ ++ +G  FR     P +  +  L     +++          
Sbjct: 39  HILIEGPPGVGKTTVAKLFSQAIGGVFRRVQMTPDLLPSDILGTYFYDMKKGEWVLRKGP 98

Query: 106 --RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
              +VLF+DE++R     +  L  AM++ Q+ +   EG +    K     F ++A    V
Sbjct: 99  VFSNVLFVDELNRAPPRTQSALLEAMQEKQVSI---EGTTFSLPK----PFLVVATQMPV 151

Query: 164 GL-----LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGT 218
           G      LT  L DRF    RL++     L+  V+ G  L+ + + DEA  +  +    +
Sbjct: 152 GSEGTYPLTPVLIDRFAYSCRLSY-----LEPSVEMGL-LSRIDIIDEARIDSIL----S 201

Query: 219 PRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           PR  G + + VR    +  A +I + I D
Sbjct: 202 PRDIGEMQKMVRG---IHVAPSIRKYIVD 227


>gi|171186449|ref|YP_001795368.1| replication factor C small subunit [Thermoproteus neutrophilus
          V24Sta]
 gi|170935661|gb|ACB40922.1| Replication factor C [Thermoproteus neutrophilus V24Sta]
          Length = 328

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 6/65 (9%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81
          RPR+ +E     E  S L+ F+     R+  + H+LF GPPG GKTT+A V+AREL G  
Sbjct: 11 RPRSFDEVVDLEEVKSRLREFV-----RSGNMPHLLFYGPPGTGKTTMALVLARELYGEY 65

Query: 82 FRSTS 86
          +R  +
Sbjct: 66 WRENT 70


>gi|90962054|ref|YP_535970.1| recombination factor protein RarA [Lactobacillus salivarius UCC118]
 gi|90821248|gb|ABD99887.1| ATPase, AAA family [Lactobacillus salivarius UCC118]
          Length = 423

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 60/130 (46%), Gaps = 4/130 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ +++  GQ       K+     +A+   L  ++  GPPG GKT++A  +A      
Sbjct: 8   MRPKNIDDVVGQQHLVGPGKIIRRMVEAKL--LSSMILYGPPGTGKTSIASAIAGSTKYA 65

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR  +    +K   +            +L +DEIHRL+   ++ L P +ED  + +++G 
Sbjct: 66  FRKMNAATDSKKKLEQVVEEAKFSGTVILLLDEIHRLTKPKQDFLLPHLEDGHI-ILIGA 124

Query: 141 GPSARSVKIN 150
                 + IN
Sbjct: 125 TTENPYISIN 134


>gi|239814294|ref|YP_002943204.1| recombination factor protein RarA [Variovorax paradoxus S110]
 gi|239800871|gb|ACS17938.1| AAA ATPase central domain protein [Variovorax paradoxus S110]
          Length = 430

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 67/255 (26%), Positives = 104/255 (40%), Gaps = 53/255 (20%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL E  GQ         L++  E+ +  +      +  GPPG GKTT+A+++A   
Sbjct: 13  LRPKTLGEVIGQQHLLGPGMPLRIAFESGQPHS-----CILWGPPGTGKTTIARLMADAF 67

Query: 79  GVNFRSTSGPVIAKAGDL-------AALLTNLED-RDVLFIDEIHRLSIIVEEILYPAME 130
              F S S  V+    D+        A    LE  R ++F+DE+HR +   ++   P +E
Sbjct: 68  DAQFLSISA-VLGGVKDIRDAVERATAARDGLEQRRTIVFVDEVHRFNKSQQDAFLPHVE 126

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP-LQDRFGIPIRLNFYEIE--- 186
                                  FT I ATT      NP  +    +  R   Y ++   
Sbjct: 127 S--------------------GLFTFIGATTE-----NPSFEVNSALLSRAAVYVLQPLT 161

Query: 187 --DLKTIVQRGAKLTGL-AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
             DLK IV +   +  +  + D A   +   + G  R   RLL  +   A  A A+ +  
Sbjct: 162 EADLKQIVAKAQAIQAVPGIEDTAIDRLVAYADGDAR---RLLNTLETLAVAARAEKLG- 217

Query: 244 EIADAALLRLAIDKM 258
            I D  LLR+  ++M
Sbjct: 218 HITDEWLLRVLGERM 232


>gi|255710491|ref|XP_002551529.1| KLTH0A01540p [Lachancea thermotolerans]
 gi|238932906|emb|CAR21087.1| KLTH0A01540p [Lachancea thermotolerans]
          Length = 328

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 6/67 (8%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          I   RP+TL++  GQ E    ++ F++  +     L H+LF GPPG GKT++   ++RE+
Sbjct: 11 IEKYRPQTLDDVYGQREIVGTVRKFVKEGR-----LPHLLFYGPPGTGKTSMIVALSREI 65

Query: 79 -GVNFRS 84
           G N+R+
Sbjct: 66 YGTNYRN 72


>gi|187923044|ref|YP_001894686.1| recombination factor protein RarA [Burkholderia phytofirmans PsJN]
 gi|187714238|gb|ACD15462.1| AAA ATPase central domain protein [Burkholderia phytofirmans PsJN]
          Length = 437

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 114/260 (43%), Gaps = 46/260 (17%)

Query: 22  LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPR ++E  GQ         L+V  E+ +A +     ++  GPPG+GKTTLA+++A   
Sbjct: 15  LRPRNIDEVIGQKHLLGPNKPLRVAFESGEAHS-----MILWGPPGVGKTTLARLMADAF 69

Query: 79  GVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
              F + S  +     I +A + A +      + ++F+DE+HR +   ++   P +E   
Sbjct: 70  HAEFIALSAVLSGVKDIREAVETAQIHRANGHQTLVFVDEVHRFNKSQQDAFLPHVES-G 128

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           L + VG      S ++N                 + L  R  + +  +  + E  + + +
Sbjct: 129 LFVFVGATTENPSFEVN-----------------SALLSRAAVYVLKSLTDDEQRELLER 171

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
              +L GL  TDEA   +   + G  R   +LL  +   A  A  +  T EI D ALL  
Sbjct: 172 AQQELGGLTFTDEARDALIGSADGDGR---KLLNNLEIVARAASQQKTT-EI-DGALLGS 226

Query: 254 AI-------DKMG---FDQL 263
           A+       DK G   +DQ+
Sbjct: 227 ALAENLRRFDKGGDAFYDQI 246


>gi|310800419|gb|EFQ35312.1| ATPase [Glomerella graminicola M1.001]
          Length = 566

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 75/150 (50%), Gaps = 22/150 (14%)

Query: 22  LRPRTLEEFTGQ--VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +RPRTL+E  GQ  V +   L+  IE+ +     +  ++  G  G GKTT+A+ +A+ +G
Sbjct: 155 MRPRTLDEVCGQDLVGSHGVLRSLIESDR-----VPSMILWGGSGTGKTTIARCIAQSVG 209

Query: 80  VNF----RSTSGPVIAKAGDLAALLTN----LEDRDVLFIDEIHRLSIIVEEILYPAMED 131
             F     ++SG  +A+   L A   N       + ++F DEIHR S   +++    +E 
Sbjct: 210 SRFIEMNATSSG--VAECKKLFAEAANELALTGRKTIIFCDEIHRFSKSQQDVFLKPVEA 267

Query: 132 FQLDLM--VGEGPSARSVKINLSR---FTL 156
             + L+    E PS R  +  LSR   FTL
Sbjct: 268 GTITLIGATTENPSFRVQQALLSRCRTFTL 297


>gi|213648825|ref|ZP_03378878.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
          Length = 414

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 50/97 (51%), Gaps = 7/97 (7%)

Query: 54  LDHVLFVGPPGLGKTTLAQVVARELGVNFRS----TSG-PVIAKAGDLAALLTNLEDRDV 108
           L  ++  GPPG GKTTLA+V+AR    +       TSG   I +A + A    N   R +
Sbjct: 17  LHSMILWGPPGTGKTTLAEVIARYASADVERISAVTSGVKEIREAIERARQNRNAGRRTI 76

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPS 143
           LF+DE+HR +   ++   P +ED  +  +    E PS
Sbjct: 77  LFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPS 113


>gi|50915051|ref|YP_061023.1| recombination factor protein RarA [Streptococcus pyogenes
           MGAS10394]
 gi|50904125|gb|AAT87840.1| ATPase, AAA family [Streptococcus pyogenes MGAS10394]
          Length = 422

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+T+ E  GQ       K+     +A    L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPKTISEVIGQKHLVGEGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTRYA 66

Query: 82  FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +  + +K       + A     L    VL +DEIHRL    ++ L P +E+  + +
Sbjct: 67  FRTFNATIDSKKRLQEITEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLENGTI-I 121

Query: 137 MVG 139
           M+G
Sbjct: 122 MIG 124


>gi|224476725|ref|YP_002634331.1| recombination factor protein RarA [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222421332|emb|CAL28146.1| conserved hypothetical protein [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 426

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 65/133 (48%), Gaps = 6/133 (4%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           S +RP+ L+E   Q        +      ++   L  ++F GPPG+GKT++A+ +A    
Sbjct: 8   SRMRPQNLDEIISQQHLVGPKGIIRRMVDSKR--LTSMIFYGPPGIGKTSIAKAIAGSTQ 65

Query: 80  VNFRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
             FR  +  V     D+  ++    +  + +L +DEIHRL    ++ L P +E+ ++ ++
Sbjct: 66  FKFRQLNA-VTNTKKDMQMVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKI-VL 123

Query: 138 VGEGPSARSVKIN 150
           +G   S     IN
Sbjct: 124 IGATTSNPYHAIN 136


>gi|115938214|ref|XP_795793.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115967858|ref|XP_001182557.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 672

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 73/151 (48%), Gaps = 20/151 (13%)

Query: 22  LRPRTLEEFTGQVEA---CSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP T++   GQ +A      L+  ++        +  ++F GPPG GKT+LA V+AR+ 
Sbjct: 276 MRPYTMDTLIGQNKALGATGTLRRLLDVGN-----IPSMIFWGPPGCGKTSLANVIARQA 330

Query: 79  GV-------NFRSTSGPV--IAKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVEEILYPA 128
            V        F +T+  V  +  A ++A     +  R  +LFIDEIHR +   ++     
Sbjct: 331 KVRNTHRFITFSATTSNVSDVKSAVEIARNEQRMYRRKTILFIDEIHRFNKTQQDTFLLH 390

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLI 157
           +E+  + L+    E PS R     LSR  ++
Sbjct: 391 VENGTIILIGATTENPSFRVNSALLSRCRVV 421


>gi|302807036|ref|XP_002985249.1| hypothetical protein SELMODRAFT_121732 [Selaginella moellendorffii]
 gi|300147077|gb|EFJ13743.1| hypothetical protein SELMODRAFT_121732 [Selaginella moellendorffii]
          Length = 503

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 83/179 (46%), Gaps = 21/179 (11%)

Query: 7   LLSRNVSQEDADISL-----LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVL 58
            LS  V+++++  ++     +RP ++ +  GQ         LK  +E      ++L  V+
Sbjct: 77  FLSTKVAKKNSKAAVPLAERMRPTSVNDILGQDHLLGPRGILKSLLEG-----DSLASVI 131

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFID 112
           F GPPG GKTTLA+ +A  +   F + S  V +   ++  +L   +       R +LF+D
Sbjct: 132 FWGPPGTGKTTLARAIASTVSYRFVALSA-VTSGVKEVREVLEEAKKAKKYGQRTLLFLD 190

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           E+HR +   ++   P +E   + + VG      S +IN +  +     T   LL   L+
Sbjct: 191 EVHRFNKAQQDAFLPYVEAGHV-VFVGATTENPSFEINAALLSRCKVLTMNKLLPEHLE 248


>gi|271967375|ref|YP_003341571.1| recombination factor protein RarA [Streptosporangium roseum DSM
           43021]
 gi|270510550|gb|ACZ88828.1| recombination factor protein RarA [Streptosporangium roseum DSM
           43021]
          Length = 436

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/119 (35%), Positives = 61/119 (51%), Gaps = 14/119 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75
           +RPR L+E  GQ   +   + L+  +EA     EA   +   GPPG GKTTLA VVA   
Sbjct: 23  MRPRGLDEVIGQRHLLGPGTPLRRLVEA-----EAPMSLFLWGPPGTGKTTLAYVVAGVT 77

Query: 76  --RELGVNFRSTSGPVIAKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMED 131
             R + V+  S     +  A + A     +  R  VLF+DE+HR +   ++ L PA+E+
Sbjct: 78  KRRFVEVSAVSAGVKEVRAAIEQARRELGMSGRQTVLFVDEVHRFNKAQQDALLPAVEN 136


>gi|32475212|ref|NP_868206.1| recombination factor protein RarA [Rhodopirellula baltica SH 1]
 gi|32445753|emb|CAD78484.1| conserved hypothetical protein-putative a helicase [Rhodopirellula
           baltica SH 1]
          Length = 439

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 113/262 (43%), Gaps = 43/262 (16%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIE-AAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           +RP+ L EF GQ       K+     A  R   +  +L  GPPG GKTTLA ++A E   
Sbjct: 22  MRPKKLSEFVGQQHILGEGKLLRRLIASGR---VGSILLHGPPGTGKTTLAHLIASEQNS 78

Query: 81  NFRS----TSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
              +    +SG      V+AKA D    ++  + R +LFIDEIHR +   ++ L   +E 
Sbjct: 79  ELITLNAISSGVKDVREVLAKARD---RVSAGDPRPLLFIDEIHRFNKSQQDALLADVES 135

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
             + L +G   S     +N +   LI+ +   GL   P+              +ED++++
Sbjct: 136 GIISL-IGATTSNPYFAVNAA---LISRSQLFGL--EPVS-------------VEDMRSL 176

Query: 192 VQR-------GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           ++R       G     + + ++A   ++  S G  R A   L       E   A     +
Sbjct: 177 LKRAITDRECGLGNQNVTIDEDAIDYLSSASDGDARKALTALEVAVHSHENPKASITRDD 236

Query: 245 IADAALLRLA-IDKMGFDQLDL 265
           +A++   R+A  D  G D  DL
Sbjct: 237 VAESMTSRIAGYDATGDDHYDL 258


>gi|294672830|ref|YP_003573446.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Prevotella
           ruminicola 23]
 gi|294473076|gb|ADE82465.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Prevotella
           ruminicola 23]
          Length = 737

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 47/77 (61%), Gaps = 4/77 (5%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKA----RAEALDHVLFVGPP 63
           ++ N   ++A +  L PR L++  GQ EA   +   ++ +KA      + L  +LFVGP 
Sbjct: 431 MAMNSDDDNAQLETLAPRLLQKIYGQDEAIRQVVEAVQMSKAGLLDDNKPLASLLFVGPT 490

Query: 64  GLGKTTLAQVVARELGV 80
           G+GKT +A+V+A+ELG+
Sbjct: 491 GVGKTEVARVLAKELGI 507


>gi|227891074|ref|ZP_04008879.1| crossover junction endodeoxyribonuclease [Lactobacillus salivarius
           ATCC 11741]
 gi|227866948|gb|EEJ74369.1| crossover junction endodeoxyribonuclease [Lactobacillus salivarius
           ATCC 11741]
          Length = 416

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 60/130 (46%), Gaps = 4/130 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ +++  GQ       K+     +A+   L  ++  GPPG GKT++A  +A      
Sbjct: 1   MRPKNIDDVVGQQHLVGPGKIIRRMVEAKL--LSSMILYGPPGTGKTSIASAIAGSTKYA 58

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR  +    +K   +            +L +DEIHRL+   ++ L P +ED  + +++G 
Sbjct: 59  FRKMNAATDSKKKLEQVVEEAKFSGTVILLLDEIHRLTKPKQDFLLPHLEDGHI-ILIGA 117

Query: 141 GPSARSVKIN 150
                 + IN
Sbjct: 118 TTENPYISIN 127


>gi|171778879|ref|ZP_02919941.1| hypothetical protein STRINF_00800 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282525|gb|EDT47949.1| hypothetical protein STRINF_00800 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 422

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 18/126 (14%)

Query: 22  LRPRTLEEFTGQVEACSNLKV---FIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP+ +++  GQ       K+    +EA K     L  ++  GPPG+GKT++A  +A   
Sbjct: 9   MRPKNIDQVIGQKHLVGEGKIIRRMVEANK-----LSSMILYGPPGIGKTSIASAIAGTT 63

Query: 79  GVNFRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
              FR+ +    +K       + A     L    VL +DEIHRL    ++ L P +E+  
Sbjct: 64  KYAFRTFNATTDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLENGN 119

Query: 134 LDLMVG 139
           + +M+G
Sbjct: 120 I-IMIG 124


>gi|87200560|ref|YP_497817.1| recombination factor protein RarA [Novosphingobium aromaticivorans
           DSM 12444]
 gi|87136241|gb|ABD26983.1| Recombination protein MgsA [Novosphingobium aromaticivorans DSM
           12444]
          Length = 452

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 63/133 (47%), Gaps = 17/133 (12%)

Query: 22  LRPRTLEEFTGQVEACS---NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPR L E  GQ         +   + A K     L  ++  GPPG GKT++A+++A  +
Sbjct: 39  LRPRDLSEIIGQDHLTGPDGAIGRMVAAGK-----LTSMILWGPPGTGKTSIARLLAEAV 93

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDF 132
           G+ + + S  V +   DL       E       R +LF+DEIHR +   ++   P +E+ 
Sbjct: 94  GMRYVAISA-VFSGVADLKKAFAEAEAMALAGRRTLLFVDEIHRFNRAQQDGFLPFVENG 152

Query: 133 QLDLM--VGEGPS 143
            + L+    E PS
Sbjct: 153 TVTLVGATTENPS 165


>gi|332306867|ref|YP_004434718.1| AAA ATPase central domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332174196|gb|AEE23450.1| AAA ATPase central domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 445

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 63/131 (48%), Gaps = 12/131 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ + ++ GQ       K  + +A  R +    +L+ GPPG GKTTLA+++A     +
Sbjct: 22  MRPQNIAQYFGQQHIVGEGKP-LRSAIERGQCHSMILW-GPPGTGKTTLAEIIAMHCDAH 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
               S  V +   D+ + +   +        R +LF+DE+HR +   ++   P +ED  +
Sbjct: 80  IERISA-VTSGVKDIRSAIEQAKQNALSQAKRTILFVDEVHRFNKSQQDAFLPFIEDGTI 138

Query: 135 DLM--VGEGPS 143
             +    E PS
Sbjct: 139 TFIGATTENPS 149


>gi|323303302|gb|EGA57098.1| Rfc3p [Saccharomyces cerevisiae FostersB]
          Length = 340

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 6/67 (8%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          +   RP TL+E  GQ E  + ++ F++  K     L H+LF GPPG GKT+    +ARE+
Sbjct: 16 VEKYRPETLDEVYGQNEVITTVRKFVDEGK-----LPHLLFYGPPGTGKTSTIVALAREI 70

Query: 79 -GVNFRS 84
           G N+ +
Sbjct: 71 YGKNYSN 77


>gi|81428450|ref|YP_395450.1| recombination factor protein RarA [Lactobacillus sakei subsp. sakei
           23K]
 gi|78610092|emb|CAI55141.1| Putative DNA-replication helicase [Lactobacillus sakei subsp. sakei
           23K]
          Length = 426

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 70/181 (38%), Gaps = 34/181 (18%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  ++E  GQ       K+      A+   L  ++  GPPG GKT++A  +A      
Sbjct: 9   MRPTNIDEIVGQTHLVGPQKIIRRMVDAKL--LSSMILYGPPGTGKTSIASAIAGSTQYA 66

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR  +    +K    + A    +    +L +DEIHRL    ++ L P +E          
Sbjct: 67  FRMLNAATDSKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPHLES--------- 117

Query: 141 GPSARSVKINLSRFTLIAATTRVGLLT-NPLQDRFGIPIRLNFYEIE-----DLKTIVQR 194
                       R  LI ATT    +T NP      I  R   +E+      D+   +QR
Sbjct: 118 -----------GRIVLIGATTENPYITINP-----AIRSRTQIFEVHPLNEADIHVAIQR 161

Query: 195 G 195
            
Sbjct: 162 A 162


>gi|50513623|pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
          (Replication Factor C, Rfc) Bound To The Dna Sliding
          Clamp (Proliferating Cell Nuclear Antigen, Pcna)
          Length = 340

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 6/67 (8%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          +   RP TL+E  GQ E  + ++ F++  K     L H+LF GPPG GKT+    +ARE+
Sbjct: 16 VEKYRPETLDEVYGQNEVITTVRKFVDEGK-----LPHLLFYGPPGTGKTSTIVALAREI 70

Query: 79 -GVNFRS 84
           G N+ +
Sbjct: 71 YGKNYSN 77


>gi|313207354|ref|YP_004046531.1| AAA ATPase central domain protein [Riemerella anatipestifer DSM
           15868]
 gi|312446670|gb|ADQ83025.1| AAA ATPase central domain protein [Riemerella anatipestifer DSM
           15868]
 gi|315023249|gb|EFT36259.1| ATPase, AAA family protein [Riemerella anatipestifer RA-YM]
 gi|325335187|gb|ADZ11461.1| the helicase subunit-like protein of the Holliday junction
           resolvase [Riemerella anatipestifer RA-GD]
          Length = 425

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 72/144 (50%), Gaps = 18/144 (12%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL+E  GQ         ++  ++  +     L+ ++  GPPG GKTTLA++++ + 
Sbjct: 11  LRPKTLDEMLGQEHLTGKDGTIRKMLDTDR-----LNSLILWGPPGTGKTTLAEILSEQS 65

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLSIIVEEILYPAMED 131
           G  F   S  V +   ++  ++ + + +        +LFIDEIHR +   ++ L  A+E 
Sbjct: 66  GRKFFKLSA-VSSGVKEVREVIDDAKKQHLFSGKSPILFIDEIHRFNKSQQDSLLHAVEK 124

Query: 132 FQLDLM--VGEGPSARSVKINLSR 153
             + L+    E PS   V   LSR
Sbjct: 125 GWVILIGATTENPSFEVVSALLSR 148


>gi|306832634|ref|ZP_07465773.1| AAA family ATPase [Streptococcus bovis ATCC 700338]
 gi|304425242|gb|EFM28369.1| AAA family ATPase [Streptococcus bovis ATCC 700338]
          Length = 422

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 60/123 (48%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ +++  GQ     + K+     +A    L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPKNIDQVIGQKHLVGDGKIIRRMVEA--NMLSSMILYGPPGIGKTSIASAIAGTTKYA 66

Query: 82  FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +    +K       + A     L    VL +DEIHRL    ++ L P +E+  + +
Sbjct: 67  FRTFNATTDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLENGNI-I 121

Query: 137 MVG 139
           M+G
Sbjct: 122 MIG 124


>gi|151944257|gb|EDN62536.1| replication factor C subunit 3 [Saccharomyces cerevisiae YJM789]
 gi|190409258|gb|EDV12523.1| replication factor C subunit 3 [Saccharomyces cerevisiae RM11-1a]
 gi|256271294|gb|EEU06366.1| Rfc3p [Saccharomyces cerevisiae JAY291]
 gi|259149079|emb|CAY82321.1| Rfc3p [Saccharomyces cerevisiae EC1118]
 gi|323331837|gb|EGA73249.1| Rfc3p [Saccharomyces cerevisiae AWRI796]
 gi|323335982|gb|EGA77259.1| Rfc3p [Saccharomyces cerevisiae Vin13]
 gi|323346957|gb|EGA81235.1| Rfc3p [Saccharomyces cerevisiae Lalvin QA23]
 gi|323352828|gb|EGA85130.1| Rfc3p [Saccharomyces cerevisiae VL3]
          Length = 340

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 6/67 (8%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          +   RP TL+E  GQ E  + ++ F++  K     L H+LF GPPG GKT+    +ARE+
Sbjct: 16 VEKYRPETLDEVYGQNEVITTVRKFVDEGK-----LPHLLFYGPPGTGKTSTIVALAREI 70

Query: 79 -GVNFRS 84
           G N+ +
Sbjct: 71 YGKNYSN 77


>gi|6324039|ref|NP_014109.1| Rfc3p [Saccharomyces cerevisiae S288c]
 gi|585844|sp|P38629|RFC3_YEAST RecName: Full=Replication factor C subunit 3; Short=Replication
          factor C3; AltName: Full=Activator 1 40 kDa subunit
 gi|439118|gb|AAA34969.1| replication factor C [Saccharomyces cerevisiae]
 gi|841466|gb|AAC49062.1| Rfc3p [Saccharomyces cerevisiae]
 gi|1050872|gb|AAC49110.1| replication factor C, 40 kDa subunit [Saccharomyces cerevisiae]
 gi|1302375|emb|CAA96207.1| RFC3 [Saccharomyces cerevisiae]
 gi|285814375|tpg|DAA10269.1| TPA: Rfc3p [Saccharomyces cerevisiae S288c]
          Length = 340

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 6/67 (8%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          +   RP TL+E  GQ E  + ++ F++  K     L H+LF GPPG GKT+    +ARE+
Sbjct: 16 VEKYRPETLDEVYGQNEVITTVRKFVDEGK-----LPHLLFYGPPGTGKTSTIVALAREI 70

Query: 79 -GVNFRS 84
           G N+ +
Sbjct: 71 YGKNYSN 77


>gi|301114403|ref|XP_002998971.1| replication factor C subunit 5 [Phytophthora infestans T30-4]
 gi|262111065|gb|EEY69117.1| replication factor C subunit 5 [Phytophthora infestans T30-4]
          Length = 353

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/82 (40%), Positives = 43/82 (52%), Gaps = 7/82 (8%)

Query: 5  EGLLSRNVSQEDAD-ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
          EG+ SRN S E    +   RP +L++     E  S L   I+A K     L H+LF GPP
Sbjct: 16 EGISSRNRSTESWPWVEKYRPSSLDDLIAHQEIISTLNRLIDAQK-----LPHLLFYGPP 70

Query: 64 GLGKTTLAQVVAREL-GVNFRS 84
          G GKT++    AR L G N+ S
Sbjct: 71 GTGKTSMIIAAARRLYGKNYGS 92


>gi|219115131|ref|XP_002178361.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217410096|gb|EEC50026.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 685

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT +A+ +A E G NF S  GP +  A  G   A + NL D+       +
Sbjct: 441 VLFYGPPGCGKTLMAKAIANECGANFISVKGPELLNAWFGGSEANVRNLFDKARAASPCI 500

Query: 109 LFIDEI 114
           LF DE+
Sbjct: 501 LFFDEM 506


>gi|213052480|ref|ZP_03345358.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
          Length = 354

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 50/97 (51%), Gaps = 7/97 (7%)

Query: 54  LDHVLFVGPPGLGKTTLAQVVARELGVNFRS----TSG-PVIAKAGDLAALLTNLEDRDV 108
           L  ++  GPPG GKTTLA+V+AR    +       TSG   I +A + A    N   R +
Sbjct: 3   LHSMILWGPPGTGKTTLAEVIARYASADVERISAVTSGVKEIREAIERARQNRNAGRRTI 62

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPS 143
           LF+DE+HR +   ++   P +ED  +  +    E PS
Sbjct: 63  LFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPS 99


>gi|291534006|emb|CBL07119.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [Megamonas hypermegale ART12/1]
          Length = 372

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 54/225 (24%), Positives = 94/225 (41%), Gaps = 37/225 (16%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVL 109
           ++  GPPG GKTTLA+++A      F S    V A   D+  ++   ++       R ++
Sbjct: 1   MILYGPPGTGKTTLAKMIAGMTKSEF-SRLNAVSAGISDVRKIIEKADENRRYYRKRTII 59

Query: 110 FIDEIHRLSIIVEEILYPAMEDFQLDLMVG---EGP-----SARSVKINLSRFTLIAATT 161
           F+DEIHR +   +++L P +ED ++ +++G   E P      A   ++ + +  L+    
Sbjct: 60  FLDEIHRFNKAQQDVLLPYVEDGRI-ILIGATTENPYFEVNHALLSRVRVVKLELLDEQN 118

Query: 162 RVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRI 221
            + +L   L+D+                    RG         DE    IA  + G  R+
Sbjct: 119 LIDILKVALEDKV-------------------RGLGKYEFKYDDEVLSIIAQYAGGDARV 159

Query: 222 AGRLLRRVRDFA-EVAHAKTITREIADAALLRLAIDKMGFDQLDL 265
           A  +L +V D A E  H        +  +      DK G +  D+
Sbjct: 160 ALNILEQVGDVALEQNHNINKEIIESIISEKIQTYDKNGDNHYDI 204


>gi|295688943|ref|YP_003592636.1| AAA ATPase central domain-containing protein [Caulobacter segnis
           ATCC 21756]
 gi|295430846|gb|ADG10018.1| AAA ATPase central domain protein [Caulobacter segnis ATCC 21756]
          Length = 433

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 9/116 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP++L+E  GQ               A A  L  ++  GPPG GKTT+A+++A+  G  
Sbjct: 22  LRPQSLDEVVGQQHLLGPEGPI--GRMAAAHRLASMILWGPPGTGKTTIARLLAKAGGYE 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMED 131
           F+  S  V +   DL         R       +LF+DEIHR +   ++   P +E+
Sbjct: 80  FQQISA-VFSGVADLKKAFEQARARRMAGQSTLLFVDEIHRFNRAQQDGFLPFVEE 134


>gi|320536106|ref|ZP_08036159.1| DNA polymerase III, subunit gamma and tau [Treponema phagedenis
           F0421]
 gi|320147023|gb|EFW38586.1| DNA polymerase III, subunit gamma and tau [Treponema phagedenis
           F0421]
          Length = 589

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 98/231 (42%), Gaps = 31/231 (13%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+  E+  GQ    + L+  I+A K     + H  LF GP G GKT+ A+++A+ L   
Sbjct: 11  RPQRFEDLLGQDFVAATLQKSIQAGK-----IAHAYLFSGPRGCGKTSSARILAKALNCE 65

Query: 82  FRSTSGPVIAKAGDLAAL--LTNLEDRDVLFIDEIHRLSI-----IVEEILYPAMEDFQL 134
               SGP     G   A   +T     DV+ ID     S+     I +EIL+P       
Sbjct: 66  ----SGPAPTPCGTCTACTEITAGSSLDVIEIDGASNTSVNDMRQIKDEILFPPNASRYK 121

Query: 135 DLMVGEGPSARSVKINLSRFTL---------IAATTRVGLLTNPLQDRFGIPIRLNF--Y 183
             ++ E     +   N    T+         I ATT +  +   ++ R     + NF   
Sbjct: 122 IYIIDEVHMLSTSAFNALLKTIEEPPPYVIFIFATTELHKVPATIKSRCQ---QFNFKLV 178

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
            +E LK  + + A  +G+   DEA   IA  + G+ R A  L  ++  F++
Sbjct: 179 SVEQLKEALAQAAMESGIQADDEALYWIANEATGSVRDAYTLFDQIVAFSD 229


>gi|306824709|ref|ZP_07458053.1| AAA family ATPase [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304432920|gb|EFM35892.1| AAA family ATPase [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 429

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+T+++  GQ       K+     +A    L  ++  GPPG+GKT++A  +A      
Sbjct: 15  MRPKTIDQVIGQEHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTKYA 72

Query: 82  FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +  V +K       + A     L    VL +DEIHRL    ++ L P +E   L +
Sbjct: 73  FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-ALVI 127

Query: 137 MVG 139
           M+G
Sbjct: 128 MIG 130


>gi|261253433|ref|ZP_05946006.1| ATPase AAA family [Vibrio orientalis CIP 102891]
 gi|260936824|gb|EEX92813.1| ATPase AAA family [Vibrio orientalis CIP 102891]
          Length = 428

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 66/148 (44%), Gaps = 11/148 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP TL+++ GQ       K    A +A    +  ++  GPPG GKTTLA+V A      
Sbjct: 1   MRPETLDQYIGQQHILGVGKPLRRALEAGH--IHSMILWGPPGTGKTTLAEVAANYANAE 58

Query: 82  FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
               S  V +   ++ A +    +      R +LF+DE+HR +   ++   P +ED  + 
Sbjct: 59  VERVSA-VTSGVKEIRAAIERARENKLAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVT 117

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATT 161
            +    E PS       LSR  +   T+
Sbjct: 118 FIGATTENPSFELNNALLSRARVYKLTS 145


>gi|296087560|emb|CBI34149.3| unnamed protein product [Vitis vinifera]
          Length = 397

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 79/173 (45%), Gaps = 41/173 (23%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRT+++  GQ    S+  +   A  +    L  ++  GPPG GKT++A+ +     VN
Sbjct: 1   MRPRTVDDVVGQDHLLSHKSLLRSAIDS--NRLPSIILWGPPGTGKTSIAKAI-----VN 53

Query: 82  FRSTSGPVIAKAGDLAALLTNLED--------------------RDVLFIDEIHRLSIIV 121
             S+S P   +   L+A+   ++D                    R +LF+DE+HR +   
Sbjct: 54  --SSSQPSSYRFVSLSAVTAGVKDVRDVVEEARKIKVSKNMNSKRTLLFVDEVHRFNKSQ 111

Query: 122 EEILYPAMEDFQLDLMVG---EGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           ++   P +ED  + + +G   E PS   +   LSR        RV L  NPLQ
Sbjct: 112 QDSFLPVIEDGSI-VFIGATTENPSFHLITPLLSR-------CRV-LTLNPLQ 155


>gi|260819040|ref|XP_002604690.1| hypothetical protein BRAFLDRAFT_228800 [Branchiostoma floridae]
 gi|229290018|gb|EEN60701.1| hypothetical protein BRAFLDRAFT_228800 [Branchiostoma floridae]
          Length = 449

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 73/151 (48%), Gaps = 20/151 (13%)

Query: 22  LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP  L+ + GQ +A    S L++ +EA       +  ++  GPPG GKTT+AQ++A+  
Sbjct: 21  VRPTCLDLYVGQTKALGAGSMLRLLVEA-----HDIPSMVLWGPPGCGKTTMAQIIAKNA 75

Query: 79  GVN----FRSTSGPV--IAKAGDLAALLTN----LEDRDVLFIDEIHRLSIIVEEILYPA 128
             +    F + S  +  + +  D+  +  N       + +LFIDEIHR +   ++   P 
Sbjct: 76  KQHQNSRFVALSATMSGVDEVRDVIKVAKNEQTMFRRKTILFIDEIHRFNKKQQDTFLPH 135

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLI 157
           +E   + L+    E PS       LSR  +I
Sbjct: 136 VESGTIVLIGATTENPSFSLNSALLSRCRVI 166


>gi|314936259|ref|ZP_07843606.1| ATPase, AAA family [Staphylococcus hominis subsp. hominis C80]
 gi|313654878|gb|EFS18623.1| ATPase, AAA family [Staphylococcus hominis subsp. hominis C80]
          Length = 422

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 65/136 (47%), Gaps = 12/136 (8%)

Query: 20  SLLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           S +RP  + E   Q         ++  IE  K     L  ++F GPPG+GKT++A+ +A 
Sbjct: 8   SRMRPTNINEIISQQHLVGPRGIIRRMIETKK-----LSSMIFYGPPGIGKTSIAKAIAG 62

Query: 77  ELGVNFRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
                FR  +  V     D+  ++    +  + +L +DEIHRL    ++ L P +E+ ++
Sbjct: 63  STEYKFRQLNA-VTNTKKDMQMVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKI 121

Query: 135 DLMVGEGPSARSVKIN 150
            +++G   S     IN
Sbjct: 122 -ILIGATTSNPYHAIN 136


>gi|315613661|ref|ZP_07888568.1| AAA family ATPase [Streptococcus sanguinis ATCC 49296]
 gi|315314352|gb|EFU62397.1| AAA family ATPase [Streptococcus sanguinis ATCC 49296]
          Length = 429

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+T+++  GQ       K+     +A    L  ++  GPPG+GKT++A  +A      
Sbjct: 15  MRPKTIDQVIGQEHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTKYA 72

Query: 82  FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +  V +K       + A     L    VL +DEIHRL    ++ L P +E   L +
Sbjct: 73  FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 127

Query: 137 MVG 139
           M+G
Sbjct: 128 MIG 130


>gi|56479430|ref|YP_161019.1| recombination factor protein RarA [Aromatoleum aromaticum EbN1]
 gi|56315473|emb|CAI10118.1| predicted ATPase related to the uncharacterized helicase subunit of
           the holliday junction resolvase [Aromatoleum aromaticum
           EbN1]
          Length = 446

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 68/143 (47%), Gaps = 17/143 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP TL E  GQ   +     L++  E+ K     L  ++  GPPG+GKTTLA+++A+  
Sbjct: 19  MRPTTLAEVAGQRHLLGPGKPLRLAFESGK-----LHSMILWGPPGVGKTTLARLMAQAF 73

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAMEDF 132
              F + S  V +   D+   + + +         +LF+DE+HR +   ++   P +E  
Sbjct: 74  DAEFIALSA-VFSGVKDIREAVAHAQTEKARGRHTILFVDEVHRFNKAQQDAFLPYVEQG 132

Query: 133 QLDLM--VGEGPSARSVKINLSR 153
            + L+    E PS       LSR
Sbjct: 133 VVTLIGATTENPSFEVNSALLSR 155


>gi|225464722|ref|XP_002264062.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 534

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 79/173 (45%), Gaps = 41/173 (23%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRT+++  GQ    S+  +   A  +    L  ++  GPPG GKT++A+ +     VN
Sbjct: 113 MRPRTVDDVVGQDHLLSHKSLLRSAIDS--NRLPSIILWGPPGTGKTSIAKAI-----VN 165

Query: 82  FRSTSGPVIAKAGDLAALLTNLED--------------------RDVLFIDEIHRLSIIV 121
             S+S P   +   L+A+   ++D                    R +LF+DE+HR +   
Sbjct: 166 --SSSQPSSYRFVSLSAVTAGVKDVRDVVEEARKIKVSKNMNSKRTLLFVDEVHRFNKSQ 223

Query: 122 EEILYPAMEDFQLDLMVG---EGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           ++   P +ED  + + +G   E PS   +   LSR        RV L  NPLQ
Sbjct: 224 QDSFLPVIEDGSI-VFIGATTENPSFHLITPLLSR-------CRV-LTLNPLQ 267


>gi|119872170|ref|YP_930177.1| replication factor C small subunit [Pyrobaculum islandicum DSM
          4184]
 gi|150415670|sp|A1RSA2|RFCS1_PYRIL RecName: Full=Replication factor C small subunit 1; Short=RFC
          small subunit 1; AltName: Full=Clamp loader small
          subunit 1
 gi|119673578|gb|ABL87834.1| replication factor C small subunit [Pyrobaculum islandicum DSM
          4184]
          Length = 329

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RPR+ +E     E  S L+ F+++       + H+LF GPPG GKTT+A V+AREL
Sbjct: 11 RPRSFDEVVDLEEVKSRLREFVKSGN-----MPHLLFYGPPGTGKTTMALVLAREL 61


>gi|27468227|ref|NP_764864.1| recombination factor protein RarA [Staphylococcus epidermidis ATCC
           12228]
 gi|293366416|ref|ZP_06613094.1| AAA family ATPase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|27315773|gb|AAO04908.1|AE016748_142 conserved hypothetical protein [Staphylococcus epidermidis ATCC
           12228]
 gi|291319450|gb|EFE59818.1| AAA family ATPase [Staphylococcus epidermidis M23864:W2(grey)]
          Length = 426

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 69/143 (48%), Gaps = 7/143 (4%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           +NVS E    S +RP+ ++E   Q        +       +   L  ++F GPPG+GKT+
Sbjct: 2   KNVSTEPL-ASRMRPKNIDEIISQQHLVGPKGIIRRMVDTKR--LSSMIFYGPPGIGKTS 58

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYP 127
           +A+ ++      FR  +  V     D+  ++    +  + +L +DEIHRL    ++ L P
Sbjct: 59  IAKAISGSTQFKFRQLNA-VTNTKKDMQLIVEEAKMSGQVILLLDEIHRLDKAKQDFLLP 117

Query: 128 AMEDFQLDLMVGEGPSARSVKIN 150
            +E+ ++ +++G   S     IN
Sbjct: 118 HLENGKI-VLIGATTSNPYHAIN 139


>gi|307705464|ref|ZP_07642319.1| ATPase family associated with various cellular activities (AAA)
           family protein [Streptococcus mitis SK597]
 gi|307620999|gb|EFO00081.1| ATPase family associated with various cellular activities (AAA)
           family protein [Streptococcus mitis SK597]
          Length = 423

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+T+++  GQ       K+     +A    L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPKTIDQVIGQEHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTKYA 66

Query: 82  FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +  V +K       + A     L    VL +DEIHRL    ++ L P +E   L +
Sbjct: 67  FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121

Query: 137 MVG 139
           M+G
Sbjct: 122 MIG 124


>gi|298675837|ref|YP_003727587.1| replication factor C [Methanohalobium evestigatum Z-7303]
 gi|298288825|gb|ADI74791.1| Replication factor C [Methanohalobium evestigatum Z-7303]
          Length = 318

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 88/222 (39%), Gaps = 37/222 (16%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           +E+  I   RP  L++  GQ EA   LK +I         L H+LF GPPG+GKT  A  
Sbjct: 2   KEEIWIEKYRPFKLDDIVGQGEAIKRLKSYISTNN-----LPHLLFSGPPGVGKTAAAVA 56

Query: 74  VAREL-----GVNFRSTSGP-------VIAKAGDLAALL-TNLEDRDVLFIDEIHRLSII 120
           +A+EL       NF   +         V  K  D +        D  ++F+DE   L+  
Sbjct: 57  IAKELFGDAWHQNFTELNASDERGIDVVRTKIKDFSKTSPIGGADFKIIFLDEADALTPD 116

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            +  L   ME +                 N  RF L  +      +  P+Q R  +  R 
Sbjct: 117 AQSALRRTMERY----------------TNNCRFIL--SCNYSSKIIEPIQSRCAV-YRF 157

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
                E ++  V+  A+  GL ++++    I   S+G  R A
Sbjct: 158 RSLSYEAVEKRVRYIAEQEGLQISEDGVEAIKYVSQGDMRKA 199


>gi|207341952|gb|EDZ69867.1| YNL290Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 181

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 6/65 (9%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          +   RP TL+E  GQ E  + ++ F++  K     L H+LF GPPG GKT+    +ARE+
Sbjct: 16 VEKYRPETLDEVYGQNEVITTVRKFVDEGK-----LPHLLFYGPPGTGKTSTIVALAREI 70

Query: 79 -GVNF 82
           G N+
Sbjct: 71 YGKNY 75


>gi|309799324|ref|ZP_07693570.1| chromosome segregation helicase [Streptococcus infantis SK1302]
 gi|308117064|gb|EFO54494.1| chromosome segregation helicase [Streptococcus infantis SK1302]
          Length = 429

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+T+++  GQ       K+     +A    L  ++  GPPG+GKT++A  +A      
Sbjct: 15  MRPKTIDQVIGQEHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTKYA 72

Query: 82  FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +  V +K       + A     L    VL +DEIHRL    ++ L P +E   L +
Sbjct: 73  FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 127

Query: 137 MVG 139
           M+G
Sbjct: 128 MIG 130


>gi|126137263|ref|XP_001385155.1| DNA replication factor C [Scheffersomyces stipitis CBS 6054]
 gi|126092377|gb|ABN67126.1| DNA replication factor C [Scheffersomyces stipitis CBS 6054]
          Length = 322

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 36/63 (57%), Gaps = 6/63 (9%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81
          RP TL+E  GQ E    +K F     A    L H+LF GPPG GKT+    +ARE+ G N
Sbjct: 7  RPSTLDEVYGQEEIVQTVKKF-----AHENRLPHLLFYGPPGTGKTSTIIALAREIYGTN 61

Query: 82 FRS 84
          +++
Sbjct: 62 YKN 64


>gi|307709674|ref|ZP_07646126.1| ATPase family associated with various cellular activities (AAA)
           family protein [Streptococcus mitis SK564]
 gi|307619572|gb|EFN98696.1| ATPase family associated with various cellular activities (AAA)
           family protein [Streptococcus mitis SK564]
          Length = 423

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+T+++  GQ       K+     +A    L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPKTIDQVIGQEHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTKYA 66

Query: 82  FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +  V +K       + A     L    VL +DEIHRL    ++ L P +E   L +
Sbjct: 67  FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121

Query: 137 MVG 139
           M+G
Sbjct: 122 MIG 124


>gi|331265869|ref|YP_004325499.1| chromosome segregation helicase, ATPase, AAA family [Streptococcus
           oralis Uo5]
 gi|326682541|emb|CBZ00158.1| chromosome segregation helicase, ATPase, AAA family [Streptococcus
           oralis Uo5]
          Length = 423

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+T+++  GQ       K+     +A    L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPKTIDQVIGQEHLVGPGKIIRRMVEANR--LSSMILYGPPGIGKTSIASAIAGTTKYA 66

Query: 82  FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +  V +K       + A     L    VL +DEIHRL    ++ L P +E   L +
Sbjct: 67  FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121

Query: 137 MVG 139
           M+G
Sbjct: 122 MIG 124


>gi|293365951|ref|ZP_06612654.1| AAA family ATPase [Streptococcus oralis ATCC 35037]
 gi|291315629|gb|EFE56079.1| AAA family ATPase [Streptococcus oralis ATCC 35037]
          Length = 429

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+T+++  GQ       K+     +A    L  ++  GPPG+GKT++A  +A      
Sbjct: 15  MRPKTIDQVIGQEHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTKYA 72

Query: 82  FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +  V +K       + A     L    VL +DEIHRL    ++ L P +E   L +
Sbjct: 73  FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 127

Query: 137 MVG 139
           M+G
Sbjct: 128 MIG 130


>gi|20090661|ref|NP_616736.1| replication factor C large subunit [Methanosarcina acetivorans C2A]
 gi|42559496|sp|Q8TPU4|RFCL_METAC RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|19915708|gb|AAM05216.1| replication factor C, large subunit [Methanosarcina acetivorans
           C2A]
          Length = 607

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 7/98 (7%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR------ 76
           RPRTLE+  G  +A  + + + E  ++R      V+  GP G+GKT+ A  +AR      
Sbjct: 17  RPRTLEDVVGNKKAVRDFRAWAEEWQSRIPETRAVILYGPAGIGKTSSAHALARDMDWDV 76

Query: 77  -ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDE 113
            EL  + + T+G +   AG  A++ T    + ++ +DE
Sbjct: 77  IELNASDQRTAGVIEKIAGSAASMNTLFGSKRLIILDE 114


>gi|237649836|ref|ZP_04524088.1| recombination factor protein RarA [Streptococcus pneumoniae CCRI
           1974]
 gi|237820763|ref|ZP_04596608.1| recombination factor protein RarA [Streptococcus pneumoniae CCRI
           1974M2]
 gi|301794760|emb|CBW37213.1| putative ATPase [Streptococcus pneumoniae INV104]
          Length = 423

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+T+++  GQ       K+     +A    L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPKTIDQVIGQEHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTKYA 66

Query: 82  FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +  V +K       + A     L    VL +DEIHRL    ++ L P +E   L +
Sbjct: 67  FRTFNATVDSKKRLQEISEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121

Query: 137 MVG 139
           M+G
Sbjct: 122 MIG 124


>gi|228987651|ref|ZP_04147765.1| hypothetical protein bthur0001_43210 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228772111|gb|EEM20563.1| hypothetical protein bthur0001_43210 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 428

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 127/330 (38%), Gaps = 65/330 (19%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  ++E  GQ       K      +A       ++  GPPG GKT++A  +A   G  
Sbjct: 9   MRPTNIQEIIGQQHLVGEEKFLWRMVQANH--FQSMILYGPPGTGKTSIASAIAGSTGTP 66

Query: 82  FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
           FR  +  V     D+  ++    +    VL +DE+HRL    ++ L P +E   L     
Sbjct: 67  FRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLL----- 120

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLNFYEI----ED-----LK 189
                          TLI ATT     +NP       I  R   +E+    ED     LK
Sbjct: 121 ---------------TLIGATT-----SNPFHAINSAIRSRCQIFELHALTEDDLLIGLK 160

Query: 190 TIVQRGAKLTG---LAVTDEAACEIAMRSRGTPRIAGRLLRR--VRDFAEVAHAKTITRE 244
             ++   K  G   + VT EA    A  S G  R A   L    +  F     A  IT E
Sbjct: 161 RALEDKEKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLE 220

Query: 245 IADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            A+  L + +   DK G    D+  L+   ++  G  V              A+  L   
Sbjct: 221 TAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDVNA------------ALHYLAR- 265

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
            +I+ G +Q    GR L+ +A++ +G+  P
Sbjct: 266 -LIEAGDLQSI--GRRLLIMAYEDIGLASP 292


>gi|317131450|ref|YP_004090764.1| AAA ATPase central domain protein [Ethanoligenens harbinense
           YUAN-3]
 gi|315469429|gb|ADU26033.1| AAA ATPase central domain protein [Ethanoligenens harbinense
           YUAN-3]
          Length = 423

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 75/146 (51%), Gaps = 16/146 (10%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL+E  GQ    +    L+  +E  +     + +++F GP G+GKTT+A ++A++ 
Sbjct: 8   LRPKTLDEVVGQRHLLAPDMLLRRVVETGQ-----IPNLIFYGPSGVGKTTVASILAKQA 62

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRD-----VLFIDEIHRLSIIVEEILYPAMEDFQ 133
           G      +G  ++ A D+ A++  L+        +L++DEI  L+   ++ L   +ED +
Sbjct: 63  GKTLHRLNGTNMSTA-DIKAIVGELDTFAGMGGVLLYLDEIQYLNKKQQQSLLEFIEDGR 121

Query: 134 LDLMVG--EGPSARSVKINLSRFTLI 157
           + L+    E P        LSR T+ 
Sbjct: 122 ITLIASTTENPYFYIYNAILSRCTVF 147


>gi|148989581|ref|ZP_01820913.1| ATPase, AAA family protein [Streptococcus pneumoniae SP6-BS73]
 gi|149020859|ref|ZP_01835388.1| ATPase, AAA family protein [Streptococcus pneumoniae SP23-BS72]
 gi|168483316|ref|ZP_02708268.1| ATPase, AAA family [Streptococcus pneumoniae CDC1873-00]
 gi|168488503|ref|ZP_02712702.1| ATPase, AAA family [Streptococcus pneumoniae SP195]
 gi|147924898|gb|EDK75980.1| ATPase, AAA family protein [Streptococcus pneumoniae SP6-BS73]
 gi|147930500|gb|EDK81483.1| ATPase, AAA family protein [Streptococcus pneumoniae SP23-BS72]
 gi|172043264|gb|EDT51310.1| ATPase, AAA family [Streptococcus pneumoniae CDC1873-00]
 gi|183572715|gb|EDT93243.1| ATPase, AAA family [Streptococcus pneumoniae SP195]
 gi|332072610|gb|EGI83093.1| AAA ATPase, central region [Streptococcus pneumoniae GA17570]
          Length = 423

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+T+++  GQ       K+     +A    L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPKTIDQVIGQEHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTKYA 66

Query: 82  FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +  V +K       + A     L    VL +DEIHRL    ++ L P +E   L +
Sbjct: 67  FRTFNATVDSKKRLQEISEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121

Query: 137 MVG 139
           M+G
Sbjct: 122 MIG 124


>gi|148995370|ref|ZP_01824100.1| ATPase, AAA family protein [Streptococcus pneumoniae SP9-BS68]
 gi|148997835|ref|ZP_01825399.1| ATPase, AAA family protein [Streptococcus pneumoniae SP11-BS70]
 gi|168491890|ref|ZP_02716033.1| ATPase, AAA family [Streptococcus pneumoniae CDC0288-04]
 gi|168575029|ref|ZP_02720992.1| ATPase, AAA family [Streptococcus pneumoniae MLV-016]
 gi|307068401|ref|YP_003877367.1| ATPase [Streptococcus pneumoniae AP200]
 gi|147756334|gb|EDK63376.1| ATPase, AAA family protein [Streptococcus pneumoniae SP11-BS70]
 gi|147926761|gb|EDK77823.1| ATPase, AAA family protein [Streptococcus pneumoniae SP9-BS68]
 gi|183573935|gb|EDT94463.1| ATPase, AAA family [Streptococcus pneumoniae CDC0288-04]
 gi|183578824|gb|EDT99352.1| ATPase, AAA family [Streptococcus pneumoniae MLV-016]
 gi|306409938|gb|ADM85365.1| ATPase [Streptococcus pneumoniae AP200]
 gi|332199801|gb|EGJ13876.1| AAA ATPase, central region [Streptococcus pneumoniae GA41317]
          Length = 423

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+T+++  GQ       K+     +A    L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPKTIDQVIGQEHLVGPGKIIRRMVEANR--LSSMILYGPPGIGKTSIASAIAGTTKYA 66

Query: 82  FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +  V +K       + A     L    VL +DEIHRL    ++ L P +E   L +
Sbjct: 67  FRTFNATVDSKKRLQEISEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121

Query: 137 MVG 139
           M+G
Sbjct: 122 MIG 124


>gi|329850245|ref|ZP_08265090.1| ATPase family associated with various cellular activities AAA
           family protein [Asticcacaulis biprosthecum C19]
 gi|328840560|gb|EGF90131.1| ATPase family associated with various cellular activities AAA
           family protein [Asticcacaulis biprosthecum C19]
          Length = 448

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 13/117 (11%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEA---LDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+ + E  GQ           + A +R  A   L  ++  GPPG+GKTT+A+++A   
Sbjct: 31  LRPKNVAEVVGQDHLLGP-----DGAISRLIARGFLPSLILWGPPGVGKTTIARLLAEAA 85

Query: 79  GVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           G  F+  S        + KA + A     +  R VLF+DEIHR +   ++   P +E
Sbjct: 86  GYEFQQISAVFSGVADLKKAFEQAQQRHQMGQRTVLFVDEIHRFNRAQQDSFLPFVE 142


>gi|303254696|ref|ZP_07340798.1| recombination factor protein RarA [Streptococcus pneumoniae BS455]
 gi|303258731|ref|ZP_07344711.1| recombination factor protein RarA [Streptococcus pneumoniae
           SP-BS293]
 gi|303261895|ref|ZP_07347841.1| recombination factor protein RarA [Streptococcus pneumoniae
           SP14-BS292]
 gi|303263757|ref|ZP_07349679.1| recombination factor protein RarA [Streptococcus pneumoniae BS397]
 gi|303265708|ref|ZP_07351607.1| recombination factor protein RarA [Streptococcus pneumoniae BS457]
 gi|303268589|ref|ZP_07354381.1| recombination factor protein RarA [Streptococcus pneumoniae BS458]
 gi|301802487|emb|CBW35245.1| putative ATPase [Streptococcus pneumoniae INV200]
 gi|302598408|gb|EFL65452.1| recombination factor protein RarA [Streptococcus pneumoniae BS455]
 gi|302636978|gb|EFL67467.1| recombination factor protein RarA [Streptococcus pneumoniae
           SP14-BS292]
 gi|302640232|gb|EFL70687.1| recombination factor protein RarA [Streptococcus pneumoniae
           SP-BS293]
 gi|302641868|gb|EFL72223.1| recombination factor protein RarA [Streptococcus pneumoniae BS458]
 gi|302644835|gb|EFL75083.1| recombination factor protein RarA [Streptococcus pneumoniae BS457]
 gi|302646795|gb|EFL77020.1| recombination factor protein RarA [Streptococcus pneumoniae BS397]
          Length = 423

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+T+++  GQ       K+     +A    L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPKTIDQVIGQEHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTKYA 66

Query: 82  FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +  V +K       + A     L    VL +DEIHRL    ++ L P +E   L +
Sbjct: 67  FRTFNATVDSKKRLQEISEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121

Query: 137 MVG 139
           M+G
Sbjct: 122 MIG 124


>gi|323455706|gb|EGB11574.1| hypothetical protein AURANDRAFT_550 [Aureococcus anophagefferens]
          Length = 725

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 39/70 (55%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LAQ VA E G NF S  GP +     G+  A + NL ++       +
Sbjct: 495 VLFYGPPGCGKTLLAQAVAHECGANFISIKGPELLTMWFGESEANVRNLFEKARASAPCI 554

Query: 109 LFIDEIHRLS 118
           LF DEI  ++
Sbjct: 555 LFFDEIDAIA 564


>gi|307702352|ref|ZP_07639310.1| ATPase family associated with various cellular activities (AAA)
           family protein [Streptococcus oralis ATCC 35037]
 gi|307624155|gb|EFO03134.1| ATPase family associated with various cellular activities (AAA)
           family protein [Streptococcus oralis ATCC 35037]
          Length = 423

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+T+++  GQ       K+     +A    L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPKTIDQVIGQEHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTKYA 66

Query: 82  FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +  V +K       + A     L    VL +DEIHRL    ++ L P +E   L +
Sbjct: 67  FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121

Query: 137 MVG 139
           M+G
Sbjct: 122 MIG 124


>gi|225861597|ref|YP_002743106.1| recombination factor protein RarA [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298255511|ref|ZP_06979097.1| recombination factor protein RarA [Streptococcus pneumoniae str.
           Canada MDR_19A]
 gi|298503523|ref|YP_003725463.1| crossover junction endodeoxyribonuclease [Streptococcus pneumoniae
           TCH8431/19A]
 gi|225728091|gb|ACO23942.1| ATPase, AAA family [Streptococcus pneumoniae Taiwan19F-14]
 gi|298239118|gb|ADI70249.1| crossover junction endodeoxyribonuclease [Streptococcus pneumoniae
           TCH8431/19A]
 gi|327389962|gb|EGE88307.1| AAA ATPase, central region [Streptococcus pneumoniae GA04375]
          Length = 423

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+T+++  GQ       K+     +A    L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPKTIDQVIGQEHLVGPGKIIRRMVEANR--LSSMILYGPPGIGKTSIASAIAGTTKYA 66

Query: 82  FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +  V +K       + A     L    VL +DEIHRL    ++ L P +E   L +
Sbjct: 67  FRTFNATVDSKKRLQEISEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121

Query: 137 MVG 139
           M+G
Sbjct: 122 MIG 124


>gi|15901619|ref|NP_346223.1| recombination factor protein RarA [Streptococcus pneumoniae TIGR4]
 gi|111656850|ref|ZP_01407692.1| hypothetical protein SpneT_02001892 [Streptococcus pneumoniae
           TIGR4]
 gi|149011349|ref|ZP_01832596.1| ATPase, AAA family protein [Streptococcus pneumoniae SP19-BS75]
 gi|225855223|ref|YP_002736735.1| recombination factor protein RarA [Streptococcus pneumoniae JJA]
 gi|14973288|gb|AAK75863.1| ATPase, AAA family [Streptococcus pneumoniae TIGR4]
 gi|147764339|gb|EDK71270.1| ATPase, AAA family protein [Streptococcus pneumoniae SP19-BS75]
 gi|225724070|gb|ACO19923.1| ATPase, AAA family [Streptococcus pneumoniae JJA]
          Length = 423

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+T+++  GQ       K+     +A    L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPKTIDQVIGQEHLVGPGKIIRRMVEANR--LSSMILYGPPGIGKTSIASAIAGTTKYA 66

Query: 82  FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +  V +K       + A     L    VL +DEIHRL    ++ L P +E   L +
Sbjct: 67  FRTFNATVDSKKRLQEISEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121

Query: 137 MVG 139
           M+G
Sbjct: 122 MIG 124


>gi|256391570|ref|YP_003113134.1| recombination factor protein RarA [Catenulispora acidiphila DSM
           44928]
 gi|256357796|gb|ACU71293.1| AAA ATPase central domain protein [Catenulispora acidiphila DSM
           44928]
          Length = 463

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 60/126 (47%), Gaps = 12/126 (9%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPR L E  GQ   + A S L   +E           +L  GPPG GKTTLA V+A   
Sbjct: 25  MRPRVLGEIVGQKHLLRAGSPLWRLVETGDG-VTVPSSILLWGPPGTGKTTLAYVLANAT 83

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAMED 131
              F   S  + A   ++ A++   +          +LF+DEIHR S   ++ L PA+E+
Sbjct: 84  ERTFAELSA-INAGVKEVRAVVERAKRELGMYGRETLLFLDEIHRFSKAQQDSLLPAVEN 142

Query: 132 FQLDLM 137
             + L+
Sbjct: 143 RWVTLV 148


>gi|322375733|ref|ZP_08050245.1| ATPase, AAA family [Streptococcus sp. C300]
 gi|321279441|gb|EFX56482.1| ATPase, AAA family [Streptococcus sp. C300]
          Length = 423

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+T+++  GQ       K+     +A    L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPKTIDQVIGQEHLVGPGKIIRRMVEANR--LSSMILYGPPGIGKTSIASAIAGTTKYA 66

Query: 82  FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +  V +K       + A     L    VL +DEIHRL    ++ L P +E   L +
Sbjct: 67  FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121

Query: 137 MVG 139
           M+G
Sbjct: 122 MIG 124


>gi|15903658|ref|NP_359208.1| recombination factor protein RarA [Streptococcus pneumoniae R6]
 gi|116516731|ref|YP_817033.1| recombination factor protein RarA [Streptococcus pneumoniae D39]
 gi|149002087|ref|ZP_01827041.1| ATPase, AAA family protein [Streptococcus pneumoniae SP14-BS69]
 gi|221232531|ref|YP_002511684.1| ATPase [Streptococcus pneumoniae ATCC 700669]
 gi|15459285|gb|AAL00419.1| Chromosome segregation helicase [Streptococcus pneumoniae R6]
 gi|116077307|gb|ABJ55027.1| ATPase, AAA family protein [Streptococcus pneumoniae D39]
 gi|147759896|gb|EDK66886.1| ATPase, AAA family protein [Streptococcus pneumoniae SP14-BS69]
 gi|220674992|emb|CAR69569.1| putative ATPase [Streptococcus pneumoniae ATCC 700669]
 gi|332074143|gb|EGI84621.1| AAA ATPase, central region [Streptococcus pneumoniae GA41301]
 gi|332201201|gb|EGJ15272.1| AAA ATPase, central region [Streptococcus pneumoniae GA47901]
          Length = 423

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+T+++  GQ       K+     +A    L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPKTIDQVIGQEHLVGPGKIIRRMVEANR--LSSMILYGPPGIGKTSIASAIAGTTKYA 66

Query: 82  FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +  V +K       + A     L    VL +DEIHRL    ++ L P +E   L +
Sbjct: 67  FRTFNATVDSKKRLQEISEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121

Query: 137 MVG 139
           M+G
Sbjct: 122 MIG 124


>gi|194397127|ref|YP_002038384.1| recombination factor protein RarA [Streptococcus pneumoniae G54]
 gi|225857384|ref|YP_002738895.1| recombination factor protein RarA [Streptococcus pneumoniae P1031]
 gi|194356794|gb|ACF55242.1| ATPase, AAA family [Streptococcus pneumoniae G54]
 gi|225725467|gb|ACO21319.1| ATPase, AAA family [Streptococcus pneumoniae P1031]
          Length = 423

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+T+++  GQ       K+     +A    L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPKTIDQVIGQEHLVGPGKIIRRMVEANR--LSSMILYGPPGIGKTSIASAIAGTTKYA 66

Query: 82  FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +  V +K       + A     L    VL +DEIHRL    ++ L P +E   L +
Sbjct: 67  FRTFNATVDSKKRLQEISEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121

Query: 137 MVG 139
           M+G
Sbjct: 122 MIG 124


>gi|327540333|gb|EGF26919.1| replication-associated recombination protein A [Rhodopirellula
           baltica WH47]
          Length = 439

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 114/264 (43%), Gaps = 47/264 (17%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP+ L EF GQ         L+  I + +     +  +L  GPPG GKTTLA ++A E 
Sbjct: 22  MRPKKLSEFVGQQHILGEGKLLRRLIASGR-----VGSILLHGPPGTGKTTLAHLIASEQ 76

Query: 79  GVNFRS----TSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
                +    +SG      V+AKA D    ++  + R +LFIDEIHR +   ++ L   +
Sbjct: 77  NSELITLNAISSGVKDVREVLAKARD---RVSAGDPRPLLFIDEIHRFNKSQQDALLADV 133

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           E   + L +G   S     +N +   LI+ +   GL   P+              +ED++
Sbjct: 134 ESGIISL-IGATTSNPYFAVNAA---LISRSQLFGL--EPVS-------------VEDMR 174

Query: 190 TIVQR-------GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           ++++R       G     + + ++A   ++  S G  R A   L       E   A    
Sbjct: 175 SLLKRAITDRECGLGNQNVTIDEDAIDYLSSASDGDARKALTALEVAVHSHENPKASISR 234

Query: 243 REIADAALLRLA-IDKMGFDQLDL 265
            ++A++   R+A  D  G D  DL
Sbjct: 235 DDVAESMTSRIAGYDATGDDHYDL 258


>gi|228475177|ref|ZP_04059903.1| recombination factor protein RarA [Staphylococcus hominis SK119]
 gi|228270788|gb|EEK12190.1| recombination factor protein RarA [Staphylococcus hominis SK119]
          Length = 422

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 12/136 (8%)

Query: 20  SLLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           S +RP  + E   Q         ++  +E  K     L  ++F GPPG+GKT++A+ +A 
Sbjct: 8   SRMRPTNINEIISQQHLVGPRGIIRRMVETKK-----LSSMIFYGPPGIGKTSIAKAIAG 62

Query: 77  ELGVNFRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
                FR  +  V     D+  ++    +  + +L +DEIHRL    ++ L P +E+ ++
Sbjct: 63  STEYKFRQLNA-VTNTKKDMQMIVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKI 121

Query: 135 DLMVGEGPSARSVKIN 150
            +++G   S     IN
Sbjct: 122 -ILIGATTSNPYHAIN 136


>gi|169833738|ref|YP_001695164.1| recombination factor protein RarA [Streptococcus pneumoniae
           Hungary19A-6]
 gi|168996240|gb|ACA36852.1| chromosome segregation helicase [Streptococcus pneumoniae
           Hungary19A-6]
          Length = 423

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+T+++  GQ       K+     +A    L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPKTIDQVIGQEHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTKYA 66

Query: 82  FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +  V +K       + A     L    VL +DEIHRL    ++ L P +E   L +
Sbjct: 67  FRTFNATVDSKKRLQEISEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121

Query: 137 MVG 139
           M+G
Sbjct: 122 MIG 124


>gi|18312140|ref|NP_558807.1| replication factor C small subunit [Pyrobaculum aerophilum str.
          IM2]
 gi|42559513|sp|Q8ZYK4|RFCS1_PYRAE RecName: Full=Replication factor C small subunit 1; Short=RFC
          small subunit 1; AltName: Full=Clamp loader small
          subunit 1
 gi|18159573|gb|AAL62989.1| replication factor C small subunit [Pyrobaculum aerophilum str.
          IM2]
          Length = 329

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 6/65 (9%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81
          RPR+ +E     E  + L+ F++A       + H+LF GPPG GKTT+A V+AREL G  
Sbjct: 11 RPRSFDEVVDLEEVKARLREFVKAGN-----MPHLLFYGPPGTGKTTMALVLARELYGEY 65

Query: 82 FRSTS 86
          +R  +
Sbjct: 66 WRENT 70


>gi|332200340|gb|EGJ14413.1| AAA ATPase, central region [Streptococcus pneumoniae GA47368]
          Length = 423

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+T+++  GQ       K+     +A    L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPKTIDQVIGQEHLVGPGKIIRRMVEANR--LSSMILYGPPGIGKTSIASAIAGTTKYA 66

Query: 82  FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +  V +K       + A     L    VL +DEIHRL    ++ L P +E   L +
Sbjct: 67  FRTFNATVDSKKRLQEISEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121

Query: 137 MVG 139
           M+G
Sbjct: 122 MIG 124


>gi|322392660|ref|ZP_08066120.1| AAA family ATPase [Streptococcus peroris ATCC 700780]
 gi|321144652|gb|EFX40053.1| AAA family ATPase [Streptococcus peroris ATCC 700780]
          Length = 429

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+T+++  GQ       K+     +A    L  ++  GPPG+GKT++A  +A      
Sbjct: 15  MRPKTIDQVIGQEHLVGPGKIIRRMVEANR--LSSMILYGPPGIGKTSIASAIAGTTKYA 72

Query: 82  FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +  V +K       + A     L    VL +DEIHRL    ++ L P +E   L +
Sbjct: 73  FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 127

Query: 137 MVG 139
           M+G
Sbjct: 128 MIG 130


>gi|270293098|ref|ZP_06199309.1| ATPase, AAA family [Streptococcus sp. M143]
 gi|270279077|gb|EFA24923.1| ATPase, AAA family [Streptococcus sp. M143]
          Length = 423

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+T+++  GQ       K+     +A    L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPKTIDQVIGQEHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTKYA 66

Query: 82  FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +  V +K       + A     L    VL +DEIHRL    ++ L P +E   L +
Sbjct: 67  FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121

Query: 137 MVG 139
           M+G
Sbjct: 122 MIG 124


>gi|323307584|gb|EGA60853.1| Rfc3p [Saccharomyces cerevisiae FostersO]
          Length = 201

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 6/65 (9%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          +   RP TL+E  GQ E  + ++ F++  K     L H+LF GPPG GKT+    +ARE+
Sbjct: 16 VEKYRPETLDEVYGQNEVITTVRKFVDEGK-----LPHLLFYGPPGTGKTSTIVALAREI 70

Query: 79 -GVNF 82
           G N+
Sbjct: 71 YGKNY 75


>gi|258546040|ref|ZP_05706274.1| replication-associated recombination protein A [Cardiobacterium
           hominis ATCC 15826]
 gi|258518697|gb|EEV87556.1| replication-associated recombination protein A [Cardiobacterium
           hominis ATCC 15826]
          Length = 457

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 97/225 (43%), Gaps = 36/225 (16%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPP 63
           L +RN     AD   LRP+TL ++ GQ     +   L V I   K  +     +L  GPP
Sbjct: 24  LFTRNGDAPLAD--RLRPKTLADYIGQRHILGDGMPLAVAIAQKKPFS-----MLLWGPP 76

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRL 117
           G GKTTLA ++A      +   S  V +   ++   +   +       + +LFIDEIHR 
Sbjct: 77  GCGKTTLALLLADAFDARYIRLSA-VFSGVKEVREAVAQAQQERAIGRKTILFIDEIHRF 135

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           +   ++   P +ED  L L+   G +  +   NL+   L  +  RV  L  PL +     
Sbjct: 136 NKAQQDAFLPYVEDGTLILI---GATTENPAFNLNNALL--SRLRVFHL-KPLSE----- 184

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
                   ++L   ++RG    GL   + A   +A ++ G  R A
Sbjct: 185 --------DELAEKLRRGLAALGLEADEPAIATLAYQAGGDARKA 221


>gi|149928209|ref|ZP_01916454.1| AAA ATPase, central region [Limnobacter sp. MED105]
 gi|149823100|gb|EDM82340.1| AAA ATPase, central region [Limnobacter sp. MED105]
          Length = 450

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 56/117 (47%), Gaps = 13/117 (11%)

Query: 22  LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP TL E  GQ     A   L +  E      + +  ++  GPPG+GKTTLA+++A   
Sbjct: 32  IRPSTLAEVVGQTHLLGAGKPLTLLFEQ-----QHVHSLILWGPPGVGKTTLARLLAGAA 86

Query: 79  GVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
              F + S  +     I  A D A+         +LFIDEIHR +   ++ L P +E
Sbjct: 87  KAQFIALSAVLSGVKEIRAAIDQASEYARAGKSTILFIDEIHRFNKSQQDALLPFVE 143


>gi|302382657|ref|YP_003818480.1| MgsA AAA+ ATPase-like protein [Brevundimonas subvibrioides ATCC
           15264]
 gi|302193285|gb|ADL00857.1| MgsA AAA+ ATPase-like protein [Brevundimonas subvibrioides ATCC
           15264]
          Length = 434

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 15/119 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP +L++  GQ   +     ++  IEA +     L  ++  GPPG GKTT+A+++A+  
Sbjct: 21  LRPASLDQVVGQDHLLGEGGPIRRMIEAGR-----LGSMILWGPPGTGKTTIARLLAKAA 75

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMED 131
           G  ++  S  V +   DL         R       +LF+DEIHR +   ++   P +E+
Sbjct: 76  GYQYQQISA-VFSGVADLKKAFEQARVRRAAGQSTLLFVDEIHRFNRAQQDGFLPFVEE 133


>gi|168494301|ref|ZP_02718444.1| chromosome segregation helicase [Streptococcus pneumoniae
           CDC3059-06]
 gi|183575836|gb|EDT96364.1| chromosome segregation helicase [Streptococcus pneumoniae
           CDC3059-06]
          Length = 423

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+T+++  GQ       K+     +A    L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPKTIDQVIGQEHLVGPGKIIRRMVEANR--LSSMILYGPPGIGKTSIASAIAGTTKYA 66

Query: 82  FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +  V +K       + A     L    VL +DEIHRL    ++ L P +E   L +
Sbjct: 67  FRTFNATVDSKKRLQEISEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121

Query: 137 MVG 139
           M+G
Sbjct: 122 MIG 124


>gi|144897129|emb|CAM73993.1| hypothetical protein MGR_0811 [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 42

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/42 (50%), Positives = 29/42 (69%)

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAI 296
           +D+MG D +   YL  I  N+GGGPVG++T+S  LSE RD +
Sbjct: 1   MDQMGLDAMYAAYLKCIPDNYGGGPVGVDTLSTALSESRDTL 42


>gi|148984220|ref|ZP_01817515.1| ATPase, AAA family protein [Streptococcus pneumoniae SP3-BS71]
 gi|149006551|ref|ZP_01830250.1| ATPase, AAA family protein [Streptococcus pneumoniae SP18-BS74]
 gi|307127992|ref|YP_003880023.1| ATPase, AAA family [Streptococcus pneumoniae 670-6B]
 gi|147761849|gb|EDK68812.1| ATPase, AAA family protein [Streptococcus pneumoniae SP18-BS74]
 gi|147923509|gb|EDK74622.1| ATPase, AAA family protein [Streptococcus pneumoniae SP3-BS71]
 gi|301800575|emb|CBW33215.1| putative ATPase [Streptococcus pneumoniae OXC141]
 gi|306485054|gb|ADM91923.1| ATPase, AAA family [Streptococcus pneumoniae 670-6B]
 gi|332072951|gb|EGI83432.1| AAA ATPase, central region [Streptococcus pneumoniae GA17545]
          Length = 423

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+T+++  GQ       K+     +A    L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPKTIDQVIGQEHLVGPGKIIRRMVEANR--LSSMILYGPPGIGKTSIASAIAGTTKYA 66

Query: 82  FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +  V +K       + A     L    VL +DEIHRL    ++ L P +E   L +
Sbjct: 67  FRTFNATVDSKKRLQEISEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121

Query: 137 MVG 139
           M+G
Sbjct: 122 MIG 124


>gi|119873156|ref|YP_931163.1| replication factor C small subunit [Pyrobaculum islandicum DSM
          4184]
 gi|150415671|sp|A1RV38|RFCS2_PYRIL RecName: Full=Replication factor C small subunit 2; Short=RFC
          small subunit 2; AltName: Full=Clamp loader small
          subunit 2
 gi|119674564|gb|ABL88820.1| replication factor C small subunit [Pyrobaculum islandicum DSM
          4184]
          Length = 320

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RPR+ +E     E  S L+ F+++       + H+LF GPPG GKTT+A V+AREL
Sbjct: 11 RPRSFDEVVDLEEVKSRLREFVKSGN-----MPHLLFYGPPGTGKTTMALVLAREL 61


>gi|289167408|ref|YP_003445677.1| chromosome segregation helicase, ATPase, AAA family [Streptococcus
           mitis B6]
 gi|288906975|emb|CBJ21809.1| chromosome segregation helicase, ATPase, AAA family [Streptococcus
           mitis B6]
          Length = 423

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+T+++  GQ       K+     +A    L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPKTIDQVIGQEHLVGPGKIIRRMVEANR--LSSMILYGPPGIGKTSIASAIAGTTKYA 66

Query: 82  FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +  V +K       + A     L    VL +DEIHRL    ++ L P +E   L +
Sbjct: 67  FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121

Query: 137 MVG 139
           M+G
Sbjct: 122 MIG 124


>gi|171185161|ref|YP_001794080.1| replication factor C small subunit [Thermoproteus neutrophilus
          V24Sta]
 gi|170934373|gb|ACB39634.1| Replication factor C [Thermoproteus neutrophilus V24Sta]
          Length = 319

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 35/56 (62%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RPR+ +E     E  S L+ F+     R+  + H+LF GPPG GKTT+A V+AREL
Sbjct: 11 RPRSFDEVVDLEEVKSRLREFV-----RSGNMPHLLFYGPPGTGKTTMALVLAREL 61


>gi|187932817|ref|YP_001885365.1| recombination factor protein RarA [Clostridium botulinum B str.
           Eklund 17B]
 gi|187720970|gb|ACD22191.1| ATPase, AAA family [Clostridium botulinum B str. Eklund 17B]
          Length = 428

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 67/145 (46%), Gaps = 10/145 (6%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           L+RP  +E+F GQ              K++   + + +F GPPG GKTTLA ++A+ +  
Sbjct: 7   LMRPSKIEDFVGQRHILGENTPLYNLIKSKK--ICNCIFYGPPGTGKTTLANIMAKYVDK 64

Query: 81  NFRSTSGPVIAKAGDLAALLTNLEDR-----DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
            F   +    A   D+  +   L++       VL+IDE+   +   ++ L   +ED ++ 
Sbjct: 65  KFYKLNATT-ASVKDIQNITNELDNLLNYAGVVLYIDELQHFNKKQQQSLLEFIEDGRIT 123

Query: 136 LMVG--EGPSARSVKINLSRFTLIA 158
           L+    E P     K  +SR  + A
Sbjct: 124 LIASTTENPYFVIHKAIISRCNIFA 148


>gi|15988297|pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
          Pyrococcus Furiosus
 gi|15988298|pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
          Pyrococcus Furiosus
 gi|15988299|pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
          Pyrococcus Furiosus
 gi|15988300|pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
          Pyrococcus Furiosus
 gi|15988301|pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
          Pyrococcus Furiosus
 gi|15988302|pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
          Pyrococcus Furiosus
          Length = 327

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 6/64 (9%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81
          RP+ L++  GQ      LK +++       ++ H+LF GPPG+GKTT A  +AREL G N
Sbjct: 20 RPQRLDDIVGQEHIVKRLKHYVKTG-----SMPHLLFAGPPGVGKTTAALALARELFGEN 74

Query: 82 FRST 85
          +R  
Sbjct: 75 WRHN 78


>gi|306829967|ref|ZP_07463154.1| crossover junction endodeoxyribonuclease [Streptococcus mitis ATCC
           6249]
 gi|304427978|gb|EFM31071.1| crossover junction endodeoxyribonuclease [Streptococcus mitis ATCC
           6249]
          Length = 429

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+T+++  GQ       K+     +A    L  ++  GPPG+GKT++A  +A      
Sbjct: 15  MRPKTIDQVIGQEHLVGPGKIIRRMVEANR--LSSMILYGPPGIGKTSIASAIAGTTKYA 72

Query: 82  FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +  V +K       + A     L    VL +DEIHRL    ++ L P +E   L +
Sbjct: 73  FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVV 127

Query: 137 MVG 139
           M+G
Sbjct: 128 MIG 130


>gi|114605196|ref|XP_001159500.1| PREDICTED: ATPase WRNIP1 isoform 1 [Pan troglodytes]
          Length = 640

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 58/110 (52%), Gaps = 19/110 (17%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75
           +RP TL+++ GQ +A      L+  +E  +     +  ++  GPPG GKTTLA ++A   
Sbjct: 231 MRPDTLQDYFGQSKAVGQDTLLRSLLETNE-----IPSLILWGPPGCGKTTLAHIIASNS 285

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLS 118
           ++  + F + S    AK  D+  ++   ++       + +LFIDEIHR +
Sbjct: 286 KKHSIRFVTLSA-TNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFN 334


>gi|213405279|ref|XP_002173411.1| DNA-dependent ATPase MGS1 [Schizosaccharomyces japonicus yFS275]
 gi|212001458|gb|EEB07118.1| DNA-dependent ATPase MGS1 [Schizosaccharomyces japonicus yFS275]
          Length = 514

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 14/143 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+TL+++ GQ E+       I     R E    +L+ G  G+GKTTLA+++A+  G +
Sbjct: 93  VRPKTLDDYVGQ-ESLVGKGGIIRNLIERDECPSMILW-GNSGVGKTTLARIIAKTTGAH 150

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F   S    A   D   +    ++       + ++F+DE+HR +   ++I  P +E   +
Sbjct: 151 FLEVSA-TSASVSDCRKIFEESQNLLRLTGKKTIVFLDEVHRFNRAQQDIFLPMVEKGLI 209

Query: 135 DLMVGEGPSARSVKINLSRFTLI 157
            L     PS R     LSR ++ 
Sbjct: 210 TL----NPSFRLNSALLSRCSVF 228


>gi|159037439|ref|YP_001536692.1| recombination factor protein RarA [Salinispora arenicola CNS-205]
 gi|157916274|gb|ABV97701.1| AAA ATPase central domain protein [Salinispora arenicola CNS-205]
          Length = 502

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 77/165 (46%), Gaps = 19/165 (11%)

Query: 6   GLLSRNVSQEDADISL-LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVG 61
           G+     + +DA +++ +RP +L+E  GQ       + L   +  A   +     V+  G
Sbjct: 24  GVAGFTPAGDDAPLAVRMRPTSLDELIGQDHLRAPGAPLHQLVSGAAPMS-----VILWG 78

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEI 114
           PPG GKTT+A +VA      F + S  + A   D+ A++     +        VLFIDE+
Sbjct: 79  PPGSGKTTIAHLVAGATDRRFVAMSA-LNAGVKDVRAVIEAARRQRRTGGPPTVLFIDEV 137

Query: 115 HRLSIIVEEILYPAMEDFQLDLMVG--EGPSARSVKINLSRFTLI 157
           HR S   ++ L  A+ED  + L+    E P    +   LSR  L+
Sbjct: 138 HRFSKTQQDSLLAAVEDRTVTLLAATTENPYFSVISPLLSRCVLL 182


>gi|227872171|ref|ZP_03990539.1| ATP dependent protease ATP-binding subunit [Oribacterium sinus
           F0268]
 gi|227841984|gb|EEJ52246.1| ATP dependent protease ATP-binding subunit [Oribacterium sinus
           F0268]
          Length = 438

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 67/147 (45%), Gaps = 27/147 (18%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEAL----- 54
           E +   N   E +DI LL+P+ +++F      GQ EA   L V +     R  +      
Sbjct: 47  EEMGGENAGSEVSDIHLLKPKEIKDFLDEYVIGQDEAKKVLSVAVYNHYKRITSKVRDID 106

Query: 55  ---DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------E 104
               ++L +GP G GKT LAQ +A+ LGV F       + +AG +   + N+        
Sbjct: 107 VQKSNILMIGPTGTGKTYLAQTLAKILGVPFAIADATALTEAGYVGEDVENILLKLIQAA 166

Query: 105 DRD-------VLFIDEIHRLSIIVEEI 124
           D D       +++IDEI +++   E +
Sbjct: 167 DYDISKAEIGIIYIDEIDKITKKSENV 193


>gi|199597549|ref|ZP_03210978.1| recombination factor protein RarA [Lactobacillus rhamnosus HN001]
 gi|258508206|ref|YP_003170957.1| AAA family ATPase [Lactobacillus rhamnosus GG]
 gi|199591572|gb|EDY99649.1| recombination factor protein RarA [Lactobacillus rhamnosus HN001]
 gi|257148133|emb|CAR87106.1| ATPase, AAA family [Lactobacillus rhamnosus GG]
          Length = 431

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 3/117 (2%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L+E  GQ E     ++      A    L  ++  GPPG GKT++A  +A      
Sbjct: 9   MRPQNLDEVVGQQELVGPGRIIRRMVSA--HRLSSMILYGPPGTGKTSIASAIAGSTKYA 66

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           FR  +     K    + A    +    +L +DEIHRL    ++ L P +E  ++ L+
Sbjct: 67  FRILNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPLLESGRIVLI 123


>gi|18426904|ref|NP_569079.1| ATPase WRNIP1 isoform 2 [Homo sapiens]
 gi|17511930|gb|AAH18923.1| Werner helicase interacting protein 1 [Homo sapiens]
 gi|55661734|emb|CAH73663.1| Werner helicase interacting protein 1 [Homo sapiens]
 gi|119575491|gb|EAW55087.1| Werner helicase interacting protein 1, isoform CRA_c [Homo sapiens]
 gi|123982094|gb|ABM82876.1| Werner helicase interacting protein 1 [synthetic construct]
 gi|123996921|gb|ABM86062.1| Werner helicase interacting protein 1 [synthetic construct]
 gi|189067919|dbj|BAG37857.1| unnamed protein product [Homo sapiens]
          Length = 640

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 58/110 (52%), Gaps = 19/110 (17%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75
           +RP TL+++ GQ +A      L+  +E  +     +  ++  GPPG GKTTLA ++A   
Sbjct: 231 MRPDTLQDYFGQSKAVGQDTLLRSLLETNE-----IPSLILWGPPGCGKTTLAHIIASNS 285

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLS 118
           ++  + F + S    AK  D+  ++   ++       + +LFIDEIHR +
Sbjct: 286 KKHSIRFVTLSA-TNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFN 334


>gi|255994886|ref|ZP_05428021.1| ATPase, AAA family [Eubacterium saphenum ATCC 49989]
 gi|255993599|gb|EEU03688.1| ATPase, AAA family [Eubacterium saphenum ATCC 49989]
          Length = 411

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 96/224 (42%), Gaps = 50/224 (22%)

Query: 20  SLLRPRTLEEFTGQVEACS-NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           + +RP  LE+F GQ      N  V+    + R E+    +F GP G GKTTLA+++A+  
Sbjct: 6   TYVRPERLEDFIGQEHFLKKNALVYNAIKEGRFES---AVFYGPSGTGKTTLARIIAKMQ 62

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR--------DVLFIDEIHRLSIIVEEILYPAME 130
             +F   +   +    +L  +L   +DR          L++DEIHR +   ++ L  A+E
Sbjct: 63  DDSFIQINAADVG-ISELKKILAEAKDRFYGIISKSTYLYVDEIHRWNKSQQDSLLSALE 121

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL--LTNPLQDRFGIPIRLNFYEI--- 185
           +                        +IA+TT      + N +  R    IR N YE    
Sbjct: 122 E--------------------GYIKVIASTTENPFFEINNQILSR----IR-NIYEFKPL 156

Query: 186 --EDLKTIVQRGAKLTG-----LAVTDEAACEIAMRSRGTPRIA 222
             +D+  +++RG  +       +   ++A   IA +S G  RIA
Sbjct: 157 ANDDIVKLLKRGVDIFAGDGRVIDYDEDALMLIAEKSNGDARIA 200


>gi|119719185|ref|YP_919680.1| replication factor C small subunit [Thermofilum pendens Hrk 5]
 gi|150415673|sp|A1RWU7|RFCS_THEPD RecName: Full=Replication factor C small subunit; Short=RFC small
           subunit; AltName: Full=Clamp loader small subunit
 gi|119524305|gb|ABL77677.1| replication factor C small subunit [Thermofilum pendens Hrk 5]
          Length = 325

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 109/246 (44%), Gaps = 30/246 (12%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E+  +   RPR+L+E   Q E    LK F+     + + + H+LF GPPG GKTT A  +
Sbjct: 3   EELWVEKYRPRSLDEIVDQEEIVKRLKEFV-----KNKNMPHLLFAGPPGTGKTTAALAL 57

Query: 75  AREL-GVNFRSTSGPVIAK-AGDLAALLTNLEDR-DVLFIDEIHRLSIIVEEILYPAMED 131
           A +L G ++R  +  + A     +  + + ++D    L I ++    +I++E        
Sbjct: 58  AHDLYGESWRDNTLELNASDERGIDVIRSRIKDYARTLPIGDVPFKLVILDEA------- 110

Query: 132 FQLDLMVGEGPSARSVKINL----SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
              D M G+   A    + L    +RF LIA       +  P+Q R  +  R       D
Sbjct: 111 ---DNMTGDAQQALRRTMELFSRNTRFILIA--NYASKIIEPIQSRCAV-FRFQPLPKGD 164

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
               ++  A+  G+ V D A   I   S+G  R A   L+     A  A ++ +T E+  
Sbjct: 165 AFQRLRWIAQQEGITVDDGALEAIWEESQGDLRKAINTLQ-----AASAISRNVTEEVVY 219

Query: 248 AALLRL 253
           AAL R+
Sbjct: 220 AALGRV 225


>gi|149238019|ref|XP_001524886.1| activator 1 40 kDa subunit [Lodderomyces elongisporus NRRL YB-4239]
 gi|146451483|gb|EDK45739.1| activator 1 40 kDa subunit [Lodderomyces elongisporus NRRL YB-4239]
          Length = 377

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 6/63 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81
           RP  LEE  GQ +  + ++ F+E  K     L H+LF GPPG GKT+    +ARE+ G N
Sbjct: 59  RPENLEEVYGQGDIVNTVRRFVETGK-----LPHLLFYGPPGTGKTSTIVALAREIYGPN 113

Query: 82  FRS 84
           +++
Sbjct: 114 YKN 116


>gi|229552006|ref|ZP_04440731.1| crossover junction endodeoxyribonuclease [Lactobacillus rhamnosus
           LMS2-1]
 gi|229314583|gb|EEN80556.1| crossover junction endodeoxyribonuclease [Lactobacillus rhamnosus
           LMS2-1]
          Length = 462

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 3/117 (2%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L+E  GQ E     ++      A    L  ++  GPPG GKT++A  +A      
Sbjct: 40  MRPQNLDEVVGQQELVGPGRIIRRMVSA--HRLSSMILYGPPGTGKTSIASAIAGSTKYA 97

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           FR  +     K    + A    +    +L +DEIHRL    ++ L P +E  ++ L+
Sbjct: 98  FRILNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPLLESGRIVLI 154


>gi|255947800|ref|XP_002564667.1| Pc22g06370 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211591684|emb|CAP97925.1| Pc22g06370 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 539

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 71/152 (46%), Gaps = 18/152 (11%)

Query: 22  LRPRTLEEFTGQVEACSN--LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +RP+TLEE  GQ     N  L+  IE  +     +  ++  G  G GKTT+A+V+A  +G
Sbjct: 128 MRPKTLEEVCGQELVGPNGILRGLIEQDR-----VPSMILWGSAGTGKTTIARVIASLVG 182

Query: 80  VNF---RSTSGPVIAKAGDLAALLTNL---EDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             F    STS  V       A   + L     + ++F DEIHR S   +++    +E  Q
Sbjct: 183 SRFVEINSTSSGVAECKKIFAEARSELGLTGRKTIIFCDEIHRFSKSQQDVFLGPVESGQ 242

Query: 134 LDLM--VGEGPSARSVKINLSR---FTLIAAT 160
           + L+    E PS +     LSR   FTL   T
Sbjct: 243 VTLIGATTENPSFKVQNALLSRCRTFTLAKLT 274


>gi|18312778|ref|NP_559445.1| replication factor C small subunit [Pyrobaculum aerophilum str.
          IM2]
 gi|42559510|sp|Q8ZWS2|RFCS2_PYRAE RecName: Full=Replication factor C small subunit 2; Short=RFC
          small subunit 2; AltName: Full=Clamp loader small
          subunit 2
 gi|18160261|gb|AAL63627.1| replication factor C small subunit [Pyrobaculum aerophilum str.
          IM2]
          Length = 319

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RPR+ +E     E  + L+ F++A       + H+LF GPPG GKTT+A V+AREL
Sbjct: 11 RPRSFDEVVDLEEVKARLRQFVKAGN-----MPHLLFYGPPGTGKTTMALVLAREL 61


>gi|288904363|ref|YP_003429584.1| ATPase, AAA family [Streptococcus gallolyticus UCN34]
 gi|306830395|ref|ZP_07463565.1| AAA family ATPase [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|325977359|ref|YP_004287075.1| AAA family ATPase [Streptococcus gallolyticus subsp. gallolyticus
           ATCC BAA-2069]
 gi|288731088|emb|CBI12634.1| putative ATPase, AAA family [Streptococcus gallolyticus UCN34]
 gi|304427420|gb|EFM30522.1| AAA family ATPase [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|325177287|emb|CBZ47331.1| AAA family ATPase [Streptococcus gallolyticus subsp. gallolyticus
           ATCC BAA-2069]
          Length = 422

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ +++  GQ       K+     +A    L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPKNIDQVIGQKHLVGEGKIIRRMVEA--NMLSSMILYGPPGIGKTSIASAIAGTTKYA 66

Query: 82  FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +    +K       + A     L    VL +DEIHRL    ++ L P +E+  + +
Sbjct: 67  FRTFNATTDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLENGNI-I 121

Query: 137 MVG 139
           M+G
Sbjct: 122 MIG 124


>gi|302546908|ref|ZP_07299250.1| AAA family ATPase [Streptomyces hygroscopicus ATCC 53653]
 gi|302464526|gb|EFL27619.1| AAA family ATPase [Streptomyces himastatinicus ATCC 53653]
          Length = 434

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 64/132 (48%), Gaps = 13/132 (9%)

Query: 21  LLRPRTLEEFTGQVEACS-NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           LLRP  LE+  GQ    + +  +    A+ R   L   +  GPPG+GKTT+A+++AR   
Sbjct: 19  LLRPTQLEDVVGQDHLLAPDAPLGRMVAQQR---LSSAILWGPPGVGKTTIARLLARAGN 75

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           + F   S    +   +L  +    + R       +LF+DEIHR +   ++   P +ED  
Sbjct: 76  LAFEPVSA-TFSGVAELRKVFAAAQRRRGIGQGTLLFVDEIHRFNRAQQDSFLPYVEDGT 134

Query: 134 LDLM--VGEGPS 143
           + L+    E PS
Sbjct: 135 ITLIGATTENPS 146


>gi|182684741|ref|YP_001836488.1| AAA family ATPase [Streptococcus pneumoniae CGSP14]
 gi|182630075|gb|ACB91023.1| ATPase, AAA family [Streptococcus pneumoniae CGSP14]
          Length = 423

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+T+++  GQ       K+     +A    L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPKTIDQVIGQDHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTKYA 66

Query: 82  FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +  V +K       + A     L    VL +DEIHRL    ++ L P +E   L +
Sbjct: 67  FRTFNATVDSKKRLQEISEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121

Query: 137 MVG 139
           M+G
Sbjct: 122 MIG 124


>gi|315658102|ref|ZP_07910974.1| AAA family ATPase [Staphylococcus lugdunensis M23590]
 gi|315496431|gb|EFU84754.1| AAA family ATPase [Staphylococcus lugdunensis M23590]
          Length = 422

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 62/132 (46%), Gaps = 4/132 (3%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           S +RP+ ++E   Q        +     + +   L  ++F GPPG+GKT++A+ ++    
Sbjct: 8   SRMRPKNIDEIISQQHLVGPRGIIRRMVETKR--LSSMIFYGPPGIGKTSIAKAISGSTA 65

Query: 80  VNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138
             FR  +     K    L      +  + +L +DEIHRL    ++ L P +E+ ++ +++
Sbjct: 66  YKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKI-VLI 124

Query: 139 GEGPSARSVKIN 150
           G   S     IN
Sbjct: 125 GATTSNPYHAIN 136


>gi|325982389|ref|YP_004294791.1| MgsA AAA+ ATPase domain-containing protein [Nitrosomonas sp. AL212]
 gi|325531908|gb|ADZ26629.1| MgsA AAA+ ATPase domain-containing protein [Nitrosomonas sp. AL212]
          Length = 444

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 67/140 (47%), Gaps = 17/140 (12%)

Query: 21  LLRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           LLRP+ L +  GQ   + A   L++  E+ K  +     ++  GPPG GKT+LA++++ E
Sbjct: 24  LLRPKQLSDVIGQNHLLGAGKPLRLAFESGKPHS-----MILWGPPGTGKTSLARLMSTE 78

Query: 78  LGVNFRSTSGPVIAKAGDL-------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
               F S S  V++   D+        + L       +LF+DE+HR +   ++   P +E
Sbjct: 79  FDCEFISLSA-VLSGIKDIRNAIEEARSTLQQTGRHTILFVDEVHRFNKSQQDAFLPHIE 137

Query: 131 DFQLDLMVGEGPSARSVKIN 150
              L   +G      S +IN
Sbjct: 138 Q-GLITFIGATTENPSFEIN 156


>gi|328463405|gb|EGF35073.1| AAA family ATPase [Lactobacillus rhamnosus MTCC 5462]
          Length = 305

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 3/117 (2%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L+E  GQ E     ++      A    L  ++  GPPG GKT++A  +A      
Sbjct: 35  MRPQNLDEVVGQQELVGPGRIIRRMVSA--HRLSSMILYGPPGTGKTSIASAIAGSTKYA 92

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           FR  +     K    + A    +    +L +DEIHRL    ++ L P +E  ++ L+
Sbjct: 93  FRILNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPLLESGRIVLI 149


>gi|116805237|gb|ABK27669.1| putative ATPase (related to helicase subunit of Holliday junction
           resolvase) [Lactobacillus paracasei]
          Length = 295

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 95/225 (42%), Gaps = 41/225 (18%)

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFID 112
           F GPPG+GKTTLA+++AR     F + S  V +   ++  ++   E       + ++F+D
Sbjct: 17  FWGPPGVGKTTLARIIARRTKAQFVTFSA-VTSGIKEIKQVMKEAEQNRELGQKTIVFVD 75

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN---LSR---FTLIAATTR--VG 164
           EIHR +   ++   P +E   + +++G      S ++N   LSR   F L   T+   V 
Sbjct: 76  EIHRFNKAQQDAFLPYVERGSI-ILIGATTENPSFEVNAALLSRTRVFVLHGLTSAELVD 134

Query: 165 LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGR 224
           LL   L+D                     RG  L  + +  +   +IA  + G  RIA  
Sbjct: 135 LLQRALKD--------------------PRGYGLQKVKIGKKLLAQIADFANGDARIALN 174

Query: 225 LLRRVRDFAEVAHAKTITREIADAALL----RLAIDKMGFDQLDL 265
            L      AE      IT   AD A L     L  DK G +  +L
Sbjct: 175 TLEMAVTNAET-KGGVITVTQADVAQLLTKKALLYDKNGEEHYNL 218


>gi|315042992|ref|XP_003170872.1| DNA-dependent ATPase MGS1 [Arthroderma gypseum CBS 118893]
 gi|311344661|gb|EFR03864.1| DNA-dependent ATPase MGS1 [Arthroderma gypseum CBS 118893]
          Length = 552

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 73/153 (47%), Gaps = 20/153 (13%)

Query: 22  LRPRTLEEFTGQVEACSN--LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +RPRTL+E  GQ     N  L+  IE  +     +  ++  G  G GKTT+A+V+A  +G
Sbjct: 147 MRPRTLDEVCGQELVGENGVLRGLIERDR-----VPSMILWGSAGTGKTTVARVIASMVG 201

Query: 80  VNF---RSTSGPVIAKAGDLAALLTN----LEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
             F    STS  V A+   L A   N       + ++F DEIHR S   +++    +E  
Sbjct: 202 SRFVEINSTSSGV-AECKKLFAEAKNELSLTGRKTIIFCDEIHRFSKSQQDVFLGPVESG 260

Query: 133 QLDLM--VGEGPSARSVKINLSR---FTLIAAT 160
           Q+ L+    E PS +     LSR   FTL   T
Sbjct: 261 QVTLIGATTENPSFKVQNALLSRCRTFTLAKLT 293


>gi|258539421|ref|YP_003173920.1| AAA family ATPase [Lactobacillus rhamnosus Lc 705]
 gi|257151097|emb|CAR90069.1| ATPase, AAA family [Lactobacillus rhamnosus Lc 705]
          Length = 431

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 3/117 (2%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L+E  GQ E     ++      A    L  ++  GPPG GKT++A  +A      
Sbjct: 9   MRPQNLDEVVGQQELVGPGRIIRRMVSA--HRLSSMILYGPPGTGKTSIASAIAGSTKYA 66

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           FR  +     K    + A    +    +L +DEIHRL    ++ L P +E  ++ L+
Sbjct: 67  FRILNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPLLESGRIVLI 123


>gi|261199858|ref|XP_002626330.1| AAA family ATPase [Ajellomyces dermatitidis SLH14081]
 gi|239594538|gb|EEQ77119.1| AAA family ATPase [Ajellomyces dermatitidis SLH14081]
          Length = 543

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 74/152 (48%), Gaps = 18/152 (11%)

Query: 22  LRPRTLEEFTGQ--VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +RP+TL++  GQ  V     L+  IE  +     +  ++  G  G GKTT+A+V+A+ +G
Sbjct: 134 MRPQTLDDVCGQELVGPSGVLRGLIEQDR-----VPSMILWGGAGTGKTTIARVIAKMVG 188

Query: 80  VNFR--STSGPVIAKAGDLAALLTN----LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             F   +++   IA+   L A   N       + +LF DEIHR S   +++    +E  Q
Sbjct: 189 SRFVEINSTNSGIAEWKKLFAEAKNELSLSGKKTILFCDEIHRFSKSQQDVFLGPVESGQ 248

Query: 134 LDLM--VGEGPSARSVKINLSR---FTLIAAT 160
           +  +    E PS+R     LSR   FTL   T
Sbjct: 249 ITFIGATTENPSSRIQNALLSRCRTFTLAKLT 280


>gi|326917076|ref|XP_003204830.1| PREDICTED: ATPase WRNIP1-like [Meleagris gallopavo]
          Length = 440

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 59/113 (52%), Gaps = 13/113 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVA---RELGVNFRSTSGPVIAKAGDLAALLTNLED-------R 106
           ++  GPPG GKTTLA ++A   ++ G+ F + S    AK  D+  +++  ++       +
Sbjct: 38  IILWGPPGCGKTTLAHIIANSSKKKGMRFVTLSA-TSAKTNDVRDVISQAQNEKRLFKRK 96

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLI 157
            +LFIDEIHR +   ++   P +E   + L+    E PS +     LSR  +I
Sbjct: 97  TILFIDEIHRFNKSQQDTFLPHVECGTVTLIGATTENPSFQVNAALLSRCRVI 149


>gi|289550607|ref|YP_003471511.1| ATPase of helicase subunit of the Holliday junction resolvase
           [Staphylococcus lugdunensis HKU09-01]
 gi|289180139|gb|ADC87384.1| ATPase of helicase subunit of the Holliday junction resolvase
           [Staphylococcus lugdunensis HKU09-01]
          Length = 422

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 62/132 (46%), Gaps = 4/132 (3%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           S +RP+ ++E   Q        +     + +   L  ++F GPPG+GKT++A+ ++    
Sbjct: 8   SRMRPKNIDEIISQQHLVGPRGIIRRMVETKR--LSSMIFYGPPGIGKTSIAKAISGSTA 65

Query: 80  VNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138
             FR  +     K    L      +  + +L +DEIHRL    ++ L P +E+ ++ +++
Sbjct: 66  YKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKI-VLI 124

Query: 139 GEGPSARSVKIN 150
           G   S     IN
Sbjct: 125 GATTSNPYHAIN 136


>gi|83858523|ref|ZP_00952045.1| ATPase, AAA family protein [Oceanicaulis alexandrii HTCC2633]
 gi|83853346|gb|EAP91198.1| ATPase, AAA family protein [Oceanicaulis alexandrii HTCC2633]
          Length = 438

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 69/144 (47%), Gaps = 11/144 (7%)

Query: 22  LRPRTLEEFTGQVEACS-NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           LRP+TLE+  GQ      +  +    A+ R   L  ++  GPPG+GKTT+A+++A   G+
Sbjct: 22  LRPQTLEDVVGQDHVLGPDGPLGRMLAQGR---LSSLILWGPPGVGKTTIARLLAERAGL 78

Query: 81  NFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
            F + S        + KA D A          +LF+DEIHR +   ++   P  E+  + 
Sbjct: 79  EFDAISAVFSGVADLKKAFDRARARRQAGRGTLLFVDEIHRFNRAQQDGFLPVAEEGIIT 138

Query: 136 LM--VGEGPSARSVKINLSRFTLI 157
           L+    E PS       LSR  ++
Sbjct: 139 LVGATTENPSFELNAALLSRCQVM 162


>gi|88856257|ref|ZP_01130917.1| ATPase related to the helicase subunit [marine actinobacterium
           PHSC20C1]
 gi|88814576|gb|EAR24438.1| ATPase related to the helicase subunit [marine actinobacterium
           PHSC20C1]
          Length = 472

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 60/133 (45%), Gaps = 12/133 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAK--ARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +RP  LEE  GQ          +  A     +     ++  GPPG GKTT+A+ +AR   
Sbjct: 47  MRPLVLEEIVGQKHLLQRGSPLMSLASDVGGSHGSASIILWGPPGTGKTTIAKAIARGSQ 106

Query: 80  VNFRSTSGPVIAKAGDLAALLTN-LEDRD------VLFIDEIHRLSIIVEEILYPAMEDF 132
             F   S  V A   D+   +   L  RD      VLF+DEIHR +   ++ L P +E+ 
Sbjct: 107 RKFVELSA-VTAGVKDVRQTIEEALTARDLYGVSTVLFLDEIHRFTKAQQDALLPGVENG 165

Query: 133 QLDLMVG--EGPS 143
            + L+    E PS
Sbjct: 166 WIILIAATTENPS 178


>gi|259649523|dbj|BAI41685.1| recombination factor protein RarA [Lactobacillus rhamnosus GG]
          Length = 461

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 3/117 (2%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L+E  GQ E     ++      A    L  ++  GPPG GKT++A  +A      
Sbjct: 39  MRPQNLDEVVGQQELVGPGRIIRRMVSA--HRLSSMILYGPPGTGKTSIASAIAGSTKYA 96

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           FR  +     K    + A    +    +L +DEIHRL    ++ L P +E  ++ L+
Sbjct: 97  FRILNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPLLESGRIVLI 153


>gi|254875332|ref|ZP_05248042.1| AAA family ATPase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254841331|gb|EET19767.1| AAA family ATPase [Francisella tularensis subsp. tularensis
           MA00-2987]
          Length = 368

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 60/111 (54%), Gaps = 13/111 (11%)

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHRL 117
            G PG+GKT+LA+++A    + F   S  V +   D+  L+T+ +  D  VLF+DEIHR 
Sbjct: 2   CGKPGVGKTSLARIIASSKKLEFFELSA-VDSGVKDIKKLITDNQHLDSFVLFLDEIHRF 60

Query: 118 SIIVEEILYPAMEDFQLDLM--VGEGPS--------ARSVKINLSRFTLIA 158
           +   ++IL P +E  ++ L+    E P+        +R   + L R +L+A
Sbjct: 61  NKSQQDILLPYVESGKIILIGATTENPTYYLNDALVSRLFILRLKRLSLVA 111


>gi|239607930|gb|EEQ84917.1| AAA family ATPase [Ajellomyces dermatitidis ER-3]
          Length = 543

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 114/263 (43%), Gaps = 52/263 (19%)

Query: 22  LRPRTLEEFTGQ--VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +RP+TL++  GQ  V     L+  IE  +     +  ++  G  G GKTT+A+V+A+ +G
Sbjct: 134 MRPQTLDDVCGQELVGPSGVLRGLIEQDR-----VPSMILWGGAGTGKTTIARVIAKMVG 188

Query: 80  VNFR--STSGPVIAKAGDLAALLTN----LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             F   +++   IA+   L A   N       + +LF DEIHR S   +++    +E  Q
Sbjct: 189 SRFVEINSTNSGIAEWKKLFAEAKNELSLSGKKTILFCDEIHRFSKSQQDVFLGPVESGQ 248

Query: 134 LDLM--VGEGPSARSVKINLSR---FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +  +    E PS+R     LSR   FTL   T                        +E++
Sbjct: 249 ITFIGATTENPSSRIQNALLSRCRTFTLAKLT------------------------VENI 284

Query: 189 KTIVQRGAKLTGLA------VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            +I+ R  ++ G        V DE    +A  + G  RI+  LL    D   ++  + +T
Sbjct: 285 VSILNRALEVEGSNYSPSPLVDDELIKYLAAFADGDARISLNLLELTMD---LSRREGMT 341

Query: 243 REIADAALLR-LAIDKMGFDQLD 264
           +E    +L + L  D++G    D
Sbjct: 342 KEDLKKSLTKTLVYDRVGDQHYD 364


>gi|254579519|ref|XP_002495745.1| ZYRO0C02090p [Zygosaccharomyces rouxii]
 gi|238938636|emb|CAR26812.1| ZYRO0C02090p [Zygosaccharomyces rouxii]
          Length = 338

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 6/63 (9%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81
          RP +L++  GQ E  + ++ F+E  K     L H+LF GPPG GKT+    +ARE+ G N
Sbjct: 19 RPESLDDVYGQTEVITTIRKFLETGK-----LPHLLFYGPPGTGKTSSIIALAREIYGKN 73

Query: 82 FRS 84
          + +
Sbjct: 74 YSN 76


>gi|320354919|ref|YP_004196258.1| Recombination protein MgsA [Desulfobulbus propionicus DSM 2032]
 gi|320123421|gb|ADW18967.1| Recombination protein MgsA [Desulfobulbus propionicus DSM 2032]
          Length = 499

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 74/148 (50%), Gaps = 18/148 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP  LE+F GQ   V     L   I++ +     +  ++  GPPG GKTTLA ++A  +
Sbjct: 60  MRPTRLEDFVGQRHLVGEGKFLNQLIDSGR-----IPSLVLWGPPGSGKTTLATILAHAV 114

Query: 79  GVNFRSTSGPVIAKAGDLAALL---TNLEDRD----VLFIDEIHRLSIIVEEILYPAMED 131
             +F   S  V++   ++  ++    ++ ++D    +LF+DEIHR +   ++   P +E 
Sbjct: 115 SAHFVFFSA-VLSGVKEIRQIVDQAKSVHEQDGRPTILFVDEIHRFNKSQQDAFLPHVES 173

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLI 157
             L L+    E PS +     LSR  ++
Sbjct: 174 GLLTLIGATTENPSFQITAPLLSRCQVL 201


>gi|315925759|ref|ZP_07921966.1| replication-associated recombination protein A [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315620868|gb|EFV00842.1| replication-associated recombination protein A [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 442

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 82/179 (45%), Gaps = 30/179 (16%)

Query: 20  SLLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           S +RP+T++   GQ         L+  I+      + +  ++  GPPG+GKTTLAQV+AR
Sbjct: 20  SRIRPQTIDAIVGQEHLLGEGRALRRLIDR-----DDIPSMILWGPPGVGKTTLAQVIAR 74

Query: 77  E----LGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127
           +            SG      ++  A   AA       R ++FIDEIHR +   ++   P
Sbjct: 75  QTAAAFVAFSAVNSGIKDIKKIMGDAKSHAA----FGRRTLVFIDEIHRFNKAQQDAFLP 130

Query: 128 AMEDFQLDLMVGEGPSARSVKIN---LSR---FTLIAATTR--VGLLTNPLQDRFGIPI 178
            +ED  + +++G      S +IN   LSR   F L   T      LLT  L + F  P+
Sbjct: 131 YVEDGSI-VLIGATTENPSFEINSALLSRCRVFLLKPLTPEAIATLLTRALAEGFDAPL 188


>gi|327350459|gb|EGE79316.1| AAA family ATPase [Ajellomyces dermatitidis ATCC 18188]
          Length = 543

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 74/152 (48%), Gaps = 18/152 (11%)

Query: 22  LRPRTLEEFTGQ--VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +RP+TL++  GQ  V     L+  IE  +     +  ++  G  G GKTT+A+V+A+ +G
Sbjct: 134 MRPQTLDDVCGQELVGPSGVLRGLIEQDR-----VPSMILWGGAGTGKTTIARVIAKMVG 188

Query: 80  VNFR--STSGPVIAKAGDLAALLTN----LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             F   +++   IA+   L A   N       + +LF DEIHR S   +++    +E  Q
Sbjct: 189 SRFVEINSTNSGIAEWKKLFAEAKNELSLSGKKTILFCDEIHRFSKSQQDVFLGPVESGQ 248

Query: 134 LDLM--VGEGPSARSVKINLSR---FTLIAAT 160
           +  +    E PS+R     LSR   FTL   T
Sbjct: 249 ITFIGATTENPSSRIQNALLSRCRTFTLAKLT 280


>gi|85707807|ref|ZP_01038873.1| ATPase [Erythrobacter sp. NAP1]
 gi|85689341|gb|EAQ29344.1| ATPase [Erythrobacter sp. NAP1]
          Length = 439

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 18/134 (13%)

Query: 9   SRNVSQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKAR---AEALDHVLFVGP 62
           +R   +  AD  L   LRPR+L+E  GQ           E A  R   A  L  ++  GP
Sbjct: 12  ARAADEPRADAPLADRLRPRSLDEVIGQEHLTGP-----EGAIGRMVAAGRLASMVLWGP 66

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDL------AALLTNLEDRDVLFIDEIHR 116
           PG GKT++A+++A  +G+ F S S  V +   DL      A  + +     +LF+DEIHR
Sbjct: 67  PGTGKTSIARLLADAVGMRFVSISA-VFSGVADLKKAFAEADKMADAGKTTLLFVDEIHR 125

Query: 117 LSIIVEEILYPAME 130
            +   ++   P +E
Sbjct: 126 FNRAQQDGFLPFVE 139


>gi|320547798|ref|ZP_08042082.1| AAA family ATPase [Streptococcus equinus ATCC 9812]
 gi|320447558|gb|EFW88317.1| AAA family ATPase [Streptococcus equinus ATCC 9812]
          Length = 422

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ +++  GQ       K+     +A    L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPKNIDQVIGQKHLVGEGKIIRRMVEA--NMLSSMILYGPPGIGKTSIASAIAGTTKYA 66

Query: 82  FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +    +K       + A     L    VL +DEIHRL    ++ L P +E+  + +
Sbjct: 67  FRTFNATTDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLENGNI-I 121

Query: 137 MVG 139
           M+G
Sbjct: 122 MIG 124


>gi|253681470|ref|ZP_04862267.1| recombination factor protein RarA [Clostridium botulinum D str.
           1873]
 gi|253561182|gb|EES90634.1| recombination factor protein RarA [Clostridium botulinum D str.
           1873]
          Length = 419

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 51/105 (48%), Gaps = 14/105 (13%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L EF GQ       K+     K   + L  ++  GPPG+GKTTLA +++ +    
Sbjct: 21  MRPKNLNEFFGQEHIIGKGKLLRRLIKT--DNLTSIILYGPPGVGKTTLAHIISLDTKSE 78

Query: 82  F---RSTSGPV------IAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           F    +TS  V      I KA +   +L     R + FIDEIH L
Sbjct: 79  FVKLNATSTGVKEIREYIKKAEE---VLKFYGKRTIFFIDEIHSL 120


>gi|223999359|ref|XP_002289352.1| cell division cycle protein 48 [Thalassiosira pseudonana CCMP1335]
 gi|220974560|gb|EED92889.1| cell division cycle protein 48 [Thalassiosira pseudonana CCMP1335]
          Length = 678

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 8/75 (10%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD-- 107
           EA   VLF GPPG GKT +A+ +A E G NF S  GP +  A  G   A + +L D+   
Sbjct: 392 EASRGVLFYGPPGCGKTLMAKAIANECGANFISVKGPELLNAYFGGSEANVRDLFDKARA 451

Query: 108 ----VLFIDEIHRLS 118
               +LF DE+  ++
Sbjct: 452 ASPCILFFDEMDSIA 466


>gi|145588933|ref|YP_001155530.1| recombination factor protein RarA [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|145047339|gb|ABP33966.1| Recombination protein MgsA [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 437

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 67/141 (47%), Gaps = 12/141 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+T+ E  GQ    +  K  +  A A  +    +L+ GPPG+GKTTLA++ A+     
Sbjct: 17  LRPKTITEVIGQTHLLATGKP-LNLAFASGKPHSMILW-GPPGVGKTTLARLSAKAFDRE 74

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED--F 132
           F + S  V+A   ++   +   +        + +LF+DEIHR +   ++ L P +E   F
Sbjct: 75  FIAISA-VLAGVKEIRESIEQAQQNMAQYGKQTILFVDEIHRFNKSQQDALLPHVESGLF 133

Query: 133 QLDLMVGEGPSARSVKINLSR 153
                  E PS       LSR
Sbjct: 134 TFIGATTENPSFEVNSALLSR 154


>gi|328947062|ref|YP_004364399.1| DNA polymerase III subunits gamma/tau [Treponema succinifaciens DSM
           2489]
 gi|328447386|gb|AEB13102.1| DNA polymerase III, subunits gamma and tau [Treponema
           succinifaciens DSM 2489]
          Length = 572

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 97/246 (39%), Gaps = 49/246 (19%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+  +   GQ      LK  I++ K     + H  LF GP G GKT+ A+++A+ L   
Sbjct: 11  RPQNFDNLIGQEFVAETLKNSIQSKK-----IAHAYLFSGPRGCGKTSTARILAKALNCQ 65

Query: 82  FRSTSGPVIAKAGDLAAL--LTNLEDRDVLFIDEIHRLSI-----IVEEILYP------- 127
                GP     G+ AA   +T     DV+ ID     S+     I +E+L+P       
Sbjct: 66  ----KGPTAFPCGECAACKEITAGSSLDVIEIDGASNTSVNDVRQIKDEVLFPPNSCRYK 121

Query: 128 ----------AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
                     +   F   L   E P    +         I ATT +  +   ++ R    
Sbjct: 122 IYIIDEVHMLSTSAFNALLKTIEEPPPYCI--------FIFATTEIQKVPATIKSRCQ-- 171

Query: 178 IRLNF--YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA-- 233
            + NF    IE +K  +   A   G+   DEA   IA  S G+ R +  L  +V  F+  
Sbjct: 172 -QFNFRLVPIEKVKQQLAEAANELGIKAEDEALYWIARESTGSMRDSYTLFDQVAAFSGG 230

Query: 234 EVAHAK 239
           E+ + K
Sbjct: 231 EITYEK 236


>gi|322388766|ref|ZP_08062363.1| crossover junction endodeoxyribonuclease [Streptococcus infantis
           ATCC 700779]
 gi|321140385|gb|EFX35893.1| crossover junction endodeoxyribonuclease [Streptococcus infantis
           ATCC 700779]
          Length = 429

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+T+++  GQ       K+     +A    L  ++  GPPG+GKT++A  +A      
Sbjct: 15  MRPQTIDQVIGQEHLVGPGKIIRRMVEANR--LSSMILYGPPGIGKTSIASAIAGTTKYA 72

Query: 82  FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +  V +K       + A     L    VL +DEIHRL    ++ L P +E   L +
Sbjct: 73  FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 127

Query: 137 MVG 139
           M+G
Sbjct: 128 MIG 130


>gi|114800296|ref|YP_761330.1| recombination factor protein RarA [Hyphomonas neptunium ATCC 15444]
 gi|114740470|gb|ABI78595.1| ATPase, AAA family [Hyphomonas neptunium ATCC 15444]
          Length = 436

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 69/145 (47%), Gaps = 13/145 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L +  GQ             A  R   L  ++  GPPG+GKTT+A+++A+E  + 
Sbjct: 22  LRPKKLSDVVGQGHLIGPDGPI--GAMLRNGRLVSMILWGPPGVGKTTIARLLAQETDLE 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F + S  + +   DL A     E R       +LF+DEIHR +   ++   P +E   + 
Sbjct: 80  FEALSA-IFSGVKDLRAAFEKAEARRRVGKGTLLFVDEIHRFNRSQQDGFLPFVESGTVT 138

Query: 136 LMVGEGPSARSVKIN---LSRFTLI 157
           L VG      S ++N   LSR  ++
Sbjct: 139 L-VGATTENPSFELNGALLSRCQVM 162


>gi|327401750|ref|YP_004342589.1| Replication factor C small subunit [Archaeoglobus veneficus SNP6]
 gi|327317258|gb|AEA47874.1| Replication factor C small subunit [Archaeoglobus veneficus SNP6]
          Length = 322

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 37/68 (54%), Gaps = 6/68 (8%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          +   RPRTL+E  GQ E    L  ++E        + H+LF GPPG GKT  A  +AR+L
Sbjct: 9  VEKYRPRTLKEVVGQEEVIQRLMGYVERKN-----IPHLLFAGPPGTGKTASAIALARDL 63

Query: 79 -GVNFRST 85
           G N+R  
Sbjct: 64 FGENWRDN 71


>gi|189230336|ref|NP_001121492.1| Werner helicase interacting protein 1 [Xenopus (Silurana)
           tropicalis]
 gi|183985959|gb|AAI66299.1| LOC100158593 protein [Xenopus (Silurana) tropicalis]
          Length = 577

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 69/152 (45%), Gaps = 23/152 (15%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKAR----AEALDHVLFVGPPGLGKTTLAQVVARE 77
           +RP  L ++ GQ       KV  E    R    +  +  ++  GPPG GKTTLA ++A+ 
Sbjct: 159 MRPTDLNDYMGQK------KVLGENTLLRNLLQSNDIPSIILWGPPGCGKTTLAHIIAKN 212

Query: 78  LGVN---FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYP 127
              N   F + S    A   D+  ++   ++       + +LF+DEIHR +   ++   P
Sbjct: 213 THKNSCRFVTLSA-TSASTSDVREVIKQAQNEQRLFKRKTILFVDEIHRFNKTQQDTFLP 271

Query: 128 AMEDFQLDLM--VGEGPSARSVKINLSRFTLI 157
            +E   + L+    E PS +     LSR  +I
Sbjct: 272 HVECGTITLIGATTENPSFQVNTALLSRCRVI 303


>gi|319940238|ref|ZP_08014590.1| ATPase [Streptococcus anginosus 1_2_62CV]
 gi|319810540|gb|EFW06876.1| ATPase [Streptococcus anginosus 1_2_62CV]
          Length = 423

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ + +  GQ       K+     +A    L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPKNINQVIGQKHLVGEGKIIRRMVEANR--LSSMILYGPPGIGKTSIASAIAGTTKFA 66

Query: 82  FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +  V +K       + A     L    VL +DEIHRL    ++ L P +E+  L +
Sbjct: 67  FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLEKTKQDFLLPLLEN-GLVI 121

Query: 137 MVG 139
           M+G
Sbjct: 122 MIG 124


>gi|46447333|ref|YP_008698.1| recombination factor protein RarA [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46400974|emb|CAF24423.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 422

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 75/162 (46%), Gaps = 13/162 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L +  GQ        +  +  +++      V+  GPPG GKT++A++ A+   + 
Sbjct: 12  LRPKNLNDIVGQDHILGENGLITKTIESQIPL--SVILWGPPGCGKTSIARLYAQAFNMQ 69

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F S S  + +   DL   +   +++       +LF+DEIHR +   ++   P +E+  + 
Sbjct: 70  FISMSA-IFSGVADLKKTIKEAQNQPLFHKGTLLFVDEIHRFNKSQQDAFLPFVENGTI- 127

Query: 136 LMVGEGPSARSVKIN---LSRFTLIAATTRVGLLTNPLQDRF 174
           +++G      S  +N   LSR  ++      G     L +R+
Sbjct: 128 ILIGATTENPSFYLNGALLSRLRVLPIYPLDGFSLEQLLERY 169


>gi|42560990|ref|NP_975441.1| recombination factor protein RarA [Mycoplasma mycoides subsp.
           mycoides SC str. PG1]
 gi|42492487|emb|CAE77083.1| putative ATPase, AAA family [Mycoplasma mycoides subsp. mycoides SC
           str. PG1]
 gi|301320816|gb|ADK69459.1| recombination factor protein RarA [Mycoplasma mycoides subsp.
           mycoides SC str. Gladysdale]
          Length = 411

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 13/116 (11%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           LLRP+T ++  GQ E     K  I            ++F GP G+GKT+ A  +A +L +
Sbjct: 8   LLRPKTTKDIIGQTEILKP-KGLINKM-ILNNYCTSLIFYGPSGVGKTSFAISLANDLKI 65

Query: 81  NFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAME 130
           ++      +   + D    LTN+      + R +L IDEIHRL+   ++IL   ME
Sbjct: 66  DYE-----IFNASYDKKEKLTNIIQTALKQKRFILIIDEIHRLNKDKQDILLEYME 116


>gi|121602885|ref|YP_989024.1| recombination factor protein RarA [Bartonella bacilliformis KC583]
 gi|120615062|gb|ABM45663.1| ATPase, AAA family protein [Bartonella bacilliformis KC583]
          Length = 439

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 65/130 (50%), Gaps = 11/130 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP +L E  GQ       + F+    A A +L  ++F G PG GKTT+A+++A E    
Sbjct: 24  MRPCSLSEVVGQSHLI-GAEGFLSRMVA-AGSLGSMIFWGAPGTGKTTVARLLALETNFA 81

Query: 82  FRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           F   S        + K  ++A        + +LF+DEIHR +   ++I  P MED  + +
Sbjct: 82  FEQVSAIFTGITELKKVFEVARARFMSGAKTLLFVDEIHRFNRAQQDIFLPFMEDGTV-V 140

Query: 137 MVG---EGPS 143
           +VG   E PS
Sbjct: 141 LVGATTENPS 150


>gi|332299032|ref|YP_004440954.1| DNA polymerase III, subunits gamma and tau [Treponema brennaborense
           DSM 12168]
 gi|332182135|gb|AEE17823.1| DNA polymerase III, subunits gamma and tau [Treponema brennaborense
           DSM 12168]
          Length = 672

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 99/229 (43%), Gaps = 27/229 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+  ++  GQ    + LK  I++ K     + H  LF GP G GKT+ A+++A+ L   
Sbjct: 11  RPQRFDDLVGQEFVAATLKNAIQSGK-----IAHAYLFAGPRGCGKTSSARILAKALNCE 65

Query: 82  FRSTSGPVIAKAGDLAAL--LTNLEDRDVLFIDEIHRLSI-----IVEEILYPA----ME 130
                GP     G+ AA   +T     DV+ ID     S+     I +E+L+P      +
Sbjct: 66  ----KGPAAVPCGECAACREITRGSSLDVIEIDGASNTSVNDVRQIKDEVLFPPNSCRYK 121

Query: 131 DFQLDLMVGEGPSA-----RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
            + +D +     SA     ++++        I ATT +  +   ++ R           +
Sbjct: 122 IYIIDEVHMLSTSAFNALLKTIEEPPPYVIFIFATTELHKVPATIKSRCQ-QFHFRLVAV 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
           E +K ++ + A    +   DEA   IA  S G+ R A  L  +V  F++
Sbjct: 181 EQIKELLAQAAAEIQVQADDEALYWIARESTGSIRDAYTLFDQVSSFSD 229


>gi|188582981|ref|YP_001926426.1| ATP-dependent protease La [Methylobacterium populi BJ001]
 gi|179346479|gb|ACB81891.1| ATP-dependent protease La [Methylobacterium populi BJ001]
          Length = 803

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 74/162 (45%), Gaps = 32/162 (19%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           + FVGPPG+GKT+L Q +AR +G +F R + G V  +A              G++   + 
Sbjct: 373 LCFVGPPGVGKTSLGQSIARAMGRSFVRVSLGGVHDEAEIRGHRRTYVGAMPGNIIQAVR 432

Query: 102 NLEDRD-VLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152
               RD V+ +DEI ++        S  + E+L P       D  +G       V  +LS
Sbjct: 433 KAGSRDCVVMLDEIDKMGRGIQGDPSAAMLEVLDPEQNGTFRDNYLG-------VPFDLS 485

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           R   IA    +  + +PL+DR  + I L  Y  ++   I +R
Sbjct: 486 RIAFIATANMLDTIPSPLRDRMEV-ISLAGYTEDEKHEIARR 526


>gi|330829975|ref|YP_004392927.1| ATPase [Aeromonas veronii B565]
 gi|328805111|gb|AEB50310.1| ATPase, AAA family [Aeromonas veronii B565]
          Length = 445

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 67/143 (46%), Gaps = 17/143 (11%)

Query: 22  LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP+ L+++ GQ     A   L+  I A    +     ++  GPPG GKTTLA+++A   
Sbjct: 19  MRPQNLDQYIGQQHILGADKPLRKAILAGHCHS-----MILWGPPGTGKTTLAELMAHYC 73

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDF 132
                  S  V +   ++ A +   ++      R +LF+DE+HR +   +++  P +ED 
Sbjct: 74  QAEVERLSA-VTSGIKEIRAAIDKAKENSWRGVRTILFVDEVHRFNKSQQDVFLPHIEDG 132

Query: 133 QLDLM--VGEGPSARSVKINLSR 153
            +  +    E PS       LSR
Sbjct: 133 TITFIGATTENPSFELNNALLSR 155


>gi|332246197|ref|XP_003272239.1| PREDICTED: ATPase WRNIP1 isoform 4 [Nomascus leucogenys]
          Length = 613

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 57/110 (51%), Gaps = 19/110 (17%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75
           +RP TL+++ GQ  A      L+  +E  +     +  ++  GPPG GKTTLA ++A   
Sbjct: 204 MRPDTLQDYFGQSRAVGQDTLLRSLLETNE-----IPSLILWGPPGCGKTTLAHIIANNS 258

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLS 118
           ++  + F + S    AK  D+  ++   ++       + +LFIDEIHR +
Sbjct: 259 KKHSIRFVTLSA-TNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFN 307


>gi|295428203|ref|ZP_06820835.1| ATPase [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|295128561|gb|EFG58195.1| ATPase [Staphylococcus aureus subsp. aureus EMRSA16]
          Length = 427

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 5/141 (3%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           NVS E    S +RP+ ++E   Q        +       +   L  ++F GPPG+GKT++
Sbjct: 3   NVSTEPL-ASRMRPKNIDEIISQQHLVGPRGIIRRMVDTKK--LTSMIFYGPPGIGKTSI 59

Query: 71  AQVVARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           A+ ++      FR  +     K    L      +  + +L +DEIHRL    ++ L P +
Sbjct: 60  AKAISGSTQYKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHL 119

Query: 130 EDFQLDLMVGEGPSARSVKIN 150
           E+ ++ +++G   S     IN
Sbjct: 120 ENGKI-VLIGATTSNPYHAIN 139


>gi|212224565|ref|YP_002307801.1| ATPase involved in DNA replication [Thermococcus onnurineus NA1]
 gi|212009522|gb|ACJ16904.1| ATPase involved in DNA replication [Thermococcus onnurineus NA1]
          Length = 326

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 6/68 (8%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          +   RP+ LE+  GQ      LK +++       ++ H+LF GPPG+GKTT A  +AREL
Sbjct: 16 VEKYRPQRLEDIVGQEHIVKRLKHYVKTG-----SMPHLLFAGPPGVGKTTAALALAREL 70

Query: 79 -GVNFRST 85
           G ++R  
Sbjct: 71 FGEHWRHN 78


>gi|82701313|ref|YP_410879.1| recombination factor protein RarA [Nitrosospira multiformis ATCC
           25196]
 gi|82409378|gb|ABB73487.1| Recombination protein MgsA [Nitrosospira multiformis ATCC 25196]
          Length = 437

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 76/162 (46%), Gaps = 24/162 (14%)

Query: 22  LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP  L++  GQ         L++  E+ K  +     ++  GPPG GKTTLA+++A   
Sbjct: 18  LRPHELKDVVGQPHLLGPGKPLRLAFESGKPHS-----MILWGPPGSGKTTLARLMASAF 72

Query: 79  GVNFRSTSGPVIAKAGDL-------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V+A   D+        A+L       +LF+DE+HR +   ++   P +E 
Sbjct: 73  DAEFIALSA-VLAGVKDIRDAIERARAVLHQSSRHTILFVDEVHRFNKSQQDAFLPFVEQ 131

Query: 132 FQLDLMVGEGPSARSVKIN---LSR---FTLIA-ATTRVGLL 166
             L   +G      S ++N   LSR   + L A +TT +G L
Sbjct: 132 -GLVTFIGATTENPSFEVNGALLSRAQVYVLTALSTTELGTL 172


>gi|118431491|ref|NP_147997.2| replication factor C small subunit [Aeropyrum pernix K1]
 gi|150421641|sp|Q9YBS7|RFCS_AERPE RecName: Full=Replication factor C small subunit; Short=RFC small
          subunit; AltName: Full=Clamp loader small subunit
 gi|116062816|dbj|BAA80521.2| replication factor C small subunit [Aeropyrum pernix K1]
          Length = 325

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 6/62 (9%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81
          RPR+L++   Q      LK F+     +   + H+LF GPPG GKTT A  +A +L G N
Sbjct: 14 RPRSLDDIVDQKHVVERLKQFV-----KQRNMPHLLFAGPPGTGKTTAAHALAHDLFGEN 68

Query: 82 FR 83
          +R
Sbjct: 69 YR 70


>gi|189485323|ref|YP_001956264.1| hypothetical protein TGRD_320 [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|170287282|dbj|BAG13803.1| conserved hypothetical protein [uncultured Termite group 1
           bacterium phylotype Rs-D17]
          Length = 439

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 10/104 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           + P + EEFTGQ     + K+   + +A  + L  V+F GPPG GK+ LA+++A +    
Sbjct: 22  MAPSSFEEFTGQDNIVGDGKLLRRSIEA--DNLGSVIFFGPPGTGKSALARIIALKTKAY 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLS 118
           F   +  V     D+  ++   E R        +L +DEIH  +
Sbjct: 80  FEEVNA-VTTSTADIRKIIAAAEARTEMSGRKTILMLDEIHHFN 122


>gi|294848657|ref|ZP_06789403.1| ATPase [Staphylococcus aureus A9754]
 gi|294824683|gb|EFG41106.1| ATPase [Staphylococcus aureus A9754]
          Length = 427

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 5/141 (3%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           NVS E    S +RP+ ++E   Q        +       +   L  ++F GPPG+GKT++
Sbjct: 3   NVSTEPL-ASRMRPKNIDEIISQQHLVGPRGIIRRMVDTKK--LTSMIFYGPPGIGKTSI 59

Query: 71  AQVVARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           A+ ++      FR  +     K    L      +  + +L +DEIHRL    ++ L P +
Sbjct: 60  AKAISGSTQYKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHL 119

Query: 130 EDFQLDLMVGEGPSARSVKIN 150
           E+ ++ +++G   S     IN
Sbjct: 120 ENGKI-VLIGATTSNPYHAIN 139


>gi|156841413|ref|XP_001644080.1| hypothetical protein Kpol_1014p42 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156114714|gb|EDO16222.1| hypothetical protein Kpol_1014p42 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 570

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 67/136 (49%), Gaps = 16/136 (11%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL--- 78
           LRP+ + ++ GQ    S     +     +   +  ++  GPPG+GKT+LA+++ +E    
Sbjct: 129 LRPQEIRDYVGQQHILSQQNGTLYKY-VKEGTIPSMILWGPPGVGKTSLARLLTKEATKN 187

Query: 79  GVNFR--STSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAM 129
           G N+    TS    A   +L ++    +        R VLFIDEIHR +   +++L P +
Sbjct: 188 GTNYHLIETSA-TKANTQELRSIFDKAKKDFQLTKRRIVLFIDEIHRFNKAQQDLLLPHV 246

Query: 130 EDFQLDLM--VGEGPS 143
           E+  + L+    E PS
Sbjct: 247 ENGDIILIGATTENPS 262


>gi|126322073|ref|XP_001368463.1| PREDICTED: similar to Werner helicase interacting protein 1 isoform
           2 [Monodelphis domestica]
          Length = 677

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 64/128 (50%), Gaps = 21/128 (16%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFV 60
           RE +  + V +  AD   +RP TL+E+ GQ +       L+  +E+ +     +  ++  
Sbjct: 242 REEIWQKLVGKPLADK--MRPATLQEYIGQNKVVGQETLLRSLLESNE-----IPSLILW 294

Query: 61  GPPGLGKTTLAQVVARELGVN---FRSTSGPVIAKAGDLAALLTNLED-------RDVLF 110
           GPPG GKTTLA ++A     N   F + S    AK  D+  ++   ++       + +LF
Sbjct: 295 GPPGCGKTTLAYIIANNSKKNSMRFVTLSA-TSAKTSDVRDVIKQAQNEKNFFKRKTILF 353

Query: 111 IDEIHRLS 118
           IDEIHR +
Sbjct: 354 IDEIHRFN 361


>gi|148643237|ref|YP_001273750.1| replication factor C large subunit [Methanobrevibacter smithii
          ATCC 35061]
 gi|158513781|sp|A5UMF4|RFCL_METS3 RecName: Full=Replication factor C large subunit; Short=RFC large
          subunit; AltName: Full=Clamp loader large subunit
 gi|148552254|gb|ABQ87382.1| replication factor C, large subunit, RfcL [Methanobrevibacter
          smithii ATCC 35061]
          Length = 492

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 1/57 (1%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
          RP+TL+E  G  +  + ++ +++  KA       +L VGPPG+GKTTLAQ +ARE  
Sbjct: 8  RPKTLDEVVGNNKEKALIQKWVDNWKA-GNPQKPLLLVGPPGIGKTTLAQAIAREFS 63


>gi|114570317|ref|YP_756997.1| recombination factor protein RarA [Maricaulis maris MCS10]
 gi|114340779|gb|ABI66059.1| Recombination protein MgsA [Maricaulis maris MCS10]
          Length = 435

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 11/144 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEA-LDHVLFVGPPGLGKTTLAQVVARELGV 80
           LRP+TL+E  GQ    +        A+ R++  L  ++  GPPG+GKTT+A+++A +  +
Sbjct: 22  LRPQTLDEVVGQDHLLAGKGPI---ARMRSQGRLASLILWGPPGVGKTTIARLLAEDSDL 78

Query: 81  NFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
            F   S        + KA + A          +LF+DEIHR +   ++   P +E+  + 
Sbjct: 79  EFEPLSAVFSGVADLKKAFERARARRQQGRGTLLFVDEIHRFNRAQQDGFLPVVEEGTVT 138

Query: 136 LM--VGEGPSARSVKINLSRFTLI 157
           L+    E PS       LSR  ++
Sbjct: 139 LVGATTENPSFELNAALLSRCQVL 162


>gi|261349970|ref|ZP_05975387.1| replication factor C large subunit [Methanobrevibacter smithii
          DSM 2374]
 gi|288860753|gb|EFC93051.1| replication factor C large subunit [Methanobrevibacter smithii
          DSM 2374]
          Length = 492

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 1/57 (1%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
          RP+TL+E  G  +  + ++ +++  KA       +L VGPPG+GKTTLAQ +ARE  
Sbjct: 8  RPKTLDEVVGNNKEKALIQKWVDNWKA-GNPQKPLLLVGPPGIGKTTLAQAIAREFS 63


>gi|109069427|ref|XP_001090335.1| PREDICTED: ATPase WRNIP1 isoform 1 [Macaca mulatta]
          Length = 640

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 57/110 (51%), Gaps = 19/110 (17%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75
           +RP TL+++ GQ  A      L+  +E  +     +  ++  GPPG GKTTLA ++A   
Sbjct: 231 MRPDTLQDYFGQSRAVGQDTLLRSLLETNE-----IPSLILWGPPGCGKTTLAHIIANNS 285

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLS 118
           ++  + F + S    AK  D+  ++   ++       + +LFIDEIHR +
Sbjct: 286 KKHSIRFVTLSA-TNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFN 334


>gi|6016879|dbj|BAA31534.2| A2-5a orf6~hypothetical protein homologous to stage V sporulation
           protein K [Bacillus sp.]
          Length = 549

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 105/235 (44%), Gaps = 46/235 (19%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGV-------NFRS-TSGPVIAKAGDLAALLTNLEDRD 107
           H++F G PG GKTT+A++VA+ L V         R  T   ++ +     A LTN   + 
Sbjct: 61  HMVFTGNPGTGKTTIARIVAKYLKVIGVLSTGQLREVTRADLVGEYVGQTARLTNDVIKS 120

Query: 108 ----VLFIDEIHRLS--------IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFT 155
               VLFIDE + LS        I   + L   MED++ +L+V     +  +K  L+   
Sbjct: 121 ALGGVLFIDEAYTLSRNDHDTFGIEAIDTLVKGMEDYRDELVVILAGYSEEMKQFLN--- 177

Query: 156 LIAATTRVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAM- 213
                      TNP L+ RF   +    Y  E++  I +  +K  G  +TD  +C+ AM 
Sbjct: 178 -----------TNPGLRSRFPNIVHFEDYTPEEMWEISRIISKQKGYRITD--SCQDAML 224

Query: 214 ------RSRGTPRIA-GRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
                 + +G      GRL+R V + A +  +  +  EI +A +  LA +   F+
Sbjct: 225 KLFEKSQIKGKNDSGNGRLVRNVIEAAILKQSSRLVHEI-NAPMDELAFEDFEFE 278


>gi|331269735|ref|YP_004396227.1| ATPase [Clostridium botulinum BKT015925]
 gi|329126285|gb|AEB76230.1| ATPase, AAA family [Clostridium botulinum BKT015925]
          Length = 419

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 52/108 (48%), Gaps = 20/108 (18%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP+ L EF GQ         L+  IE      + L  ++  GPPG+GKTTLA +++ + 
Sbjct: 21  MRPKNLNEFFGQQHIVGKGKLLRRLIET-----DNLTSIILYGPPGVGKTTLAHIISLDT 75

Query: 79  GVNF---RSTSGPV------IAKAGDLAALLTNLEDRDVLFIDEIHRL 117
              F    +TS  V      I KA +   +L     R + FIDEIH L
Sbjct: 76  KSEFVKLNATSAGVKEIREYIKKAEE---VLKFYGKRTIFFIDEIHSL 120


>gi|296197531|ref|XP_002746323.1| PREDICTED: ATPase WRNIP1-like isoform 2 [Callithrix jacchus]
          Length = 641

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 57/110 (51%), Gaps = 19/110 (17%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75
           +RP TL+++ GQ  A      L+  +E  +     +  ++  GPPG GKTTLA ++A   
Sbjct: 232 MRPDTLQDYFGQSRAVGQETLLRSLLETNE-----IPSLILWGPPGCGKTTLAHIIANNS 286

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLS 118
           ++  + F + S    AK  D+  ++   ++       + +LFIDEIHR +
Sbjct: 287 KKHSIRFVTLSA-TNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFN 335


>gi|154287624|ref|XP_001544607.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150408248|gb|EDN03789.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 547

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 112/263 (42%), Gaps = 52/263 (19%)

Query: 22  LRPRTLEEFTGQ--VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +RPR+L++  GQ  +     L+  IE  +     +  ++  G  G GKTT+A+V+A+ +G
Sbjct: 135 MRPRSLDDIYGQELIGPSGVLRGLIEQDR-----VPSMILWGGAGTGKTTIARVIAKMVG 189

Query: 80  VNFR--STSGPVIAKAGDLAALLTN---LEDRD-VLFIDEIHRLSIIVEEILYPAMEDFQ 133
             F   +++   +A+   L A   N   L  R  ++F DEIHR S   +++    +E  Q
Sbjct: 190 SRFVEINSTNSGVAECKKLFAEAKNELSLSGRKTIIFCDEIHRFSKSQQDVFLGPVESGQ 249

Query: 134 LDLM--VGEGPSARSVKINLSR---FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + L+    E PS +     LSR   FTL   T                         ED+
Sbjct: 250 ITLIGATTENPSFKVQNALLSRCRTFTLAKLTD------------------------EDI 285

Query: 189 KTIVQRGAKLTGLA------VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            +I+ R  K+ G        V DE    +A  + G  R +  LL    D   ++  + +T
Sbjct: 286 VSILNRALKVEGPNYSPSPLVDDELIKYLAAFADGDARTSLNLLELAMD---LSRREGMT 342

Query: 243 REIADAALLR-LAIDKMGFDQLD 264
           RE    +L R L  D+ G    D
Sbjct: 343 REDLKKSLTRTLVYDRAGDQHYD 365


>gi|295669242|ref|XP_002795169.1| DNA-dependent ATPase MGS1 [Paracoccidioides brasiliensis Pb01]
 gi|226285103|gb|EEH40669.1| DNA-dependent ATPase MGS1 [Paracoccidioides brasiliensis Pb01]
          Length = 539

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 74/152 (48%), Gaps = 18/152 (11%)

Query: 22  LRPRTLEEFTGQ--VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +RP+TL++  GQ  V     L+  IE  +     +  ++  G  G GKTT+A+V+A+ +G
Sbjct: 127 MRPQTLDDVCGQELVGPSGVLRGLIEQDR-----VPSMVLWGGAGTGKTTIARVIAKMVG 181

Query: 80  VNFR--STSGPVIAKAGDLAALLTN----LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             F   +++   +A+   L A   N       + +LF DEIHR S   +++    +E  Q
Sbjct: 182 SRFVEINSTNSGVAECKKLFAEARNELSLSGKKTILFCDEIHRFSKSQQDVFLSPVESGQ 241

Query: 134 LDLM--VGEGPSARSVKINLSR---FTLIAAT 160
           + L+    E PS +     LSR   FTL   T
Sbjct: 242 ITLIGTTTENPSFKVQNALLSRCRTFTLAKLT 273


>gi|42522441|ref|NP_967821.1| recombination factor protein RarA [Bdellovibrio bacteriovorus
           HD100]
 gi|39574973|emb|CAE78814.1| ATPase, AAA family [Bdellovibrio bacteriovorus HD100]
          Length = 449

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 73/151 (48%), Gaps = 22/151 (14%)

Query: 21  LLRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +LRP+TL++  GQ +     S L   +     R   L  ++  GPPG GKTT A  +++ 
Sbjct: 31  ILRPKTLDDIFGQQKTLGPQSKLGQML-----RKGYLPSLIIWGPPGTGKTTFALALSQH 85

Query: 78  LGVNFRS----TSGPV----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
              ++       SG      + +AG    L    + + +LF+DEIHR +   +++L P +
Sbjct: 86  FNAHYVHLNAVDSGAKALREVGEAGKDRRL--QYQQKTILFVDEIHRFNKAQQDVLLPFV 143

Query: 130 EDFQLDLMVG---EGPSARSVKINLSRFTLI 157
           E   L ++VG   E PS    +  LSR  ++
Sbjct: 144 EKGDL-VLVGATTENPSYELNRALLSRCRVV 173


>gi|319936498|ref|ZP_08010914.1| recombination protein rarA [Coprobacillus sp. 29_1]
 gi|319808613|gb|EFW05165.1| recombination protein rarA [Coprobacillus sp. 29_1]
          Length = 421

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 59/113 (52%), Gaps = 7/113 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP +L++  GQ        +F +  K +   +  +L+ GPPG GKTTLA  +A +L + 
Sbjct: 9   MRPTSLKDVLGQKHIIGENALFTQFVK-KHHPMSTILY-GPPGCGKTTLASALANDLNIP 66

Query: 82  FR---STSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
           +R   +++G    K  D+      +     + IDE+HRL+   ++ L P +E+
Sbjct: 67  YRIFNASTGN--KKEMDIIIEEAKMSGELFVIIDEVHRLNKDKQDHLLPHIEN 117


>gi|28897881|ref|NP_797486.1| recombination factor protein RarA [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260364483|ref|ZP_05777108.1| recombination factor protein RarA [Vibrio parahaemolyticus K5030]
 gi|260877040|ref|ZP_05889395.1| recombination factor protein RarA [Vibrio parahaemolyticus AN-5034]
 gi|260898067|ref|ZP_05906563.1| recombination factor protein RarA [Vibrio parahaemolyticus
           Peru-466]
 gi|260902448|ref|ZP_05910843.1| recombination factor protein RarA [Vibrio parahaemolyticus AQ4037]
 gi|28806094|dbj|BAC59370.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308088962|gb|EFO38657.1| recombination factor protein RarA [Vibrio parahaemolyticus
           Peru-466]
 gi|308093687|gb|EFO43382.1| recombination factor protein RarA [Vibrio parahaemolyticus AN-5034]
 gi|308110636|gb|EFO48176.1| recombination factor protein RarA [Vibrio parahaemolyticus AQ4037]
 gi|308114616|gb|EFO52156.1| recombination factor protein RarA [Vibrio parahaemolyticus K5030]
          Length = 449

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 64/147 (43%), Gaps = 9/147 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+T+ ++ GQ       K    A +A    +  ++  GPPG GKTTLA+V A      
Sbjct: 21  MRPQTIGQYIGQQHILGPGKPLRRALEAGH--VHSMILWGPPGTGKTTLAEVAANYANAE 78

Query: 82  FRSTSGPVIAKAGDLAALLTNLED-----RDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
               S          AA+    E+     R +LF+DE+HR +   ++   P +ED  +  
Sbjct: 79  VERVSAVTSGVKEIRAAIEKARENKMAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVTF 138

Query: 137 M--VGEGPSARSVKINLSRFTLIAATT 161
           +    E PS       LSR  +   T+
Sbjct: 139 IGATTENPSFELNNALLSRARVYKLTS 165


>gi|54297677|ref|YP_124046.1| recombination factor protein RarA [Legionella pneumophila str.
           Paris]
 gi|53751462|emb|CAH12880.1| hypothetical protein lpp1728 [Legionella pneumophila str. Paris]
          Length = 434

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 59/118 (50%), Gaps = 15/118 (12%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+ ++E  GQ         L++    +K     L  ++  GPPG+GKTT+A++ A+  
Sbjct: 16  LRPKHIDEVIGQSHLLGEGKPLRLCFMGSK-----LHSMILWGPPGVGKTTIARLTAQAF 70

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130
              + + S  V +   D+ A +   ++      + +LFIDEIHR +   ++ L P  E
Sbjct: 71  DCEWIALSA-VFSGVKDIRAAIEKAQEYLIHDKQTILFIDEIHRFNKAQQDALLPYTE 127


>gi|70993728|ref|XP_751711.1| AAA family ATPase [Aspergillus fumigatus Af293]
 gi|66849345|gb|EAL89673.1| AAA family ATPase, putative [Aspergillus fumigatus Af293]
 gi|159125367|gb|EDP50484.1| AAA family ATPase, putative [Aspergillus fumigatus A1163]
          Length = 539

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 73/263 (27%), Positives = 111/263 (42%), Gaps = 52/263 (19%)

Query: 22  LRPRTLEEFTGQVEACSN--LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +RPRTL+E  GQ     N  L+  IE  +  +     ++  G  G GKTT+A+V+A  +G
Sbjct: 126 MRPRTLDEVCGQELVGPNGVLRGLIEQDRVPS-----MILWGHAGTGKTTIARVIASMVG 180

Query: 80  VNF---RSTSGPVIAKAGDLAALLTNL---EDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             F    STS  V       A   + L     + ++F DEIHR S   +++    +E  Q
Sbjct: 181 SRFVEINSTSTGVAECKKIFAEARSELGLTGRKTIVFCDEIHRFSKSQQDVFLGPVESGQ 240

Query: 134 LDLM--VGEGPSARSVKINLSR---FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + L+    E PS +     LSR   FTL           + L D             ED+
Sbjct: 241 ITLIGATTENPSFKVQNALLSRCRTFTL-----------SKLSD-------------EDV 276

Query: 189 KTIVQRGAKLTGLA------VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           K+I+ R  ++ G        V DE    +A  S G  R +  LL    D ++     ++T
Sbjct: 277 KSILDRALRVEGPNYSPSSLVDDELIEYLARFSDGDARTSLNLLELAMDLSK---RPSMT 333

Query: 243 REIADAALLR-LAIDKMGFDQLD 264
           +E    +L + L  D+ G    D
Sbjct: 334 KEELKRSLTKTLVYDRAGDQHYD 356


>gi|228472019|ref|ZP_04056787.1| ATPase, AAA family [Capnocytophaga gingivalis ATCC 33624]
 gi|228276631|gb|EEK15344.1| ATPase, AAA family [Capnocytophaga gingivalis ATCC 33624]
          Length = 428

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 53/108 (49%), Gaps = 13/108 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG---------PVIAKAGDLAALLTNLEDRD 107
           ++F GPPG GKTTLA ++A+E    F S S           +I K+     L T      
Sbjct: 44  LIFWGPPGTGKTTLAHIIAKESQRAFFSLSAISSGIKDVRDIIEKSKREQGLFT--ARNP 101

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSR 153
           ++FIDEIHR +   ++ L  A+E   + L+    E PS   +   LSR
Sbjct: 102 IIFIDEIHRFNKTQQDSLLEAVERGWVTLIGATTENPSFEVIPALLSR 149


>gi|304321467|ref|YP_003855110.1| hypothetical protein PB2503_09579 [Parvularcula bermudensis
           HTCC2503]
 gi|303300369|gb|ADM09968.1| hypothetical protein PB2503_09579 [Parvularcula bermudensis
           HTCC2503]
          Length = 402

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 9/98 (9%)

Query: 54  LDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR------D 107
           L  ++  GPPG+GKTTLA+++A  + + F S S  + +   DL  +    E R       
Sbjct: 17  LPSLILWGPPGVGKTTLARLLAGAVDLEFVSISA-IFSGVADLRKVFEAAEGRRQTGQGT 75

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPS 143
           +LF+DEIHR +   ++   P ME   + L+    E PS
Sbjct: 76  LLFVDEIHRFNRAQQDSFLPVMEKGTITLVGATTENPS 113


>gi|148268108|ref|YP_001247051.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus JH9]
 gi|150394176|ref|YP_001316851.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus JH1]
 gi|257793701|ref|ZP_05642680.1| recombination protein MgsA [Staphylococcus aureus A9781]
 gi|258446870|ref|ZP_05695024.1| recombination protein MgsA [Staphylococcus aureus A6300]
 gi|258453603|ref|ZP_05701581.1| recombination protein MgsA [Staphylococcus aureus A5937]
 gi|282928261|ref|ZP_06335866.1| ATPase [Staphylococcus aureus A10102]
 gi|295406749|ref|ZP_06816554.1| ATPase [Staphylococcus aureus A8819]
 gi|297245669|ref|ZP_06929534.1| ATPase [Staphylococcus aureus A8796]
 gi|147741177|gb|ABQ49475.1| Recombination protein MgsA [Staphylococcus aureus subsp. aureus
           JH9]
 gi|149946628|gb|ABR52564.1| AAA ATPase central domain protein [Staphylococcus aureus subsp.
           aureus JH1]
 gi|257787673|gb|EEV26013.1| recombination protein MgsA [Staphylococcus aureus A9781]
 gi|257854445|gb|EEV77394.1| recombination protein MgsA [Staphylococcus aureus A6300]
 gi|257864334|gb|EEV87084.1| recombination protein MgsA [Staphylococcus aureus A5937]
 gi|282590068|gb|EFB95150.1| ATPase [Staphylococcus aureus A10102]
 gi|285817309|gb|ADC37796.1| ATPase related to helicase subunit of the Holliday junction
           resolvase [Staphylococcus aureus 04-02981]
 gi|294968496|gb|EFG44520.1| ATPase [Staphylococcus aureus A8819]
 gi|297177320|gb|EFH36572.1| ATPase [Staphylococcus aureus A8796]
 gi|312830014|emb|CBX34856.1| ATPase family associated with various cellular activities (AAA)
           family protein [Staphylococcus aureus subsp. aureus
           ECT-R 2]
 gi|315129910|gb|EFT85900.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|329727592|gb|EGG64048.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus 21172]
          Length = 424

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 61/132 (46%), Gaps = 4/132 (3%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           S +RP+ ++E   Q        +       +   L  ++F GPPG+GKT++A+ ++    
Sbjct: 8   SRMRPKNIDEIISQQHLVGPKGIIRRMVDTKK--LTSMIFYGPPGIGKTSIAKAISGSTQ 65

Query: 80  VNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138
             FR  +     K    L      +  + +L +DEIHRL    ++ L P +E+ ++ +++
Sbjct: 66  YKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKI-VLI 124

Query: 139 GEGPSARSVKIN 150
           G   S     IN
Sbjct: 125 GATTSNPYHAIN 136


>gi|68490424|ref|XP_710962.1| hypothetical protein CaO19.10723 [Candida albicans SC5314]
 gi|46432227|gb|EAK91721.1| hypothetical protein CaO19.10723 [Candida albicans SC5314]
          Length = 361

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 7/64 (10%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL--GV 80
          RP +LEE  GQ E    ++ F+E  K     L H+LF GPPG GKT+    +A+E+    
Sbjct: 30 RPDSLEEVKGQQEIVDTVRKFVETGK-----LPHLLFYGPPGTGKTSTIIALAKEIYGAT 84

Query: 81 NFRS 84
          N+++
Sbjct: 85 NYKN 88


>gi|15924617|ref|NP_372151.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|15927207|ref|NP_374740.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus N315]
 gi|156979945|ref|YP_001442204.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus Mu3]
 gi|255006413|ref|ZP_05145014.2| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|258438200|ref|ZP_05689484.1| recombination factor protein RarA [Staphylococcus aureus A9299]
 gi|258443663|ref|ZP_05692002.1| recombination factor protein RarA [Staphylococcus aureus A8115]
 gi|269203253|ref|YP_003282522.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282893130|ref|ZP_06301364.1| ATPase [Staphylococcus aureus A8117]
 gi|296275913|ref|ZP_06858420.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus MR1]
 gi|13701425|dbj|BAB42719.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           N315]
 gi|14247398|dbj|BAB57789.1| similar to ATPase, AAA family [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|156722080|dbj|BAF78497.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|257848244|gb|EEV72235.1| recombination factor protein RarA [Staphylococcus aureus A9299]
 gi|257851069|gb|EEV75012.1| recombination factor protein RarA [Staphylococcus aureus A8115]
 gi|262075543|gb|ACY11516.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282764448|gb|EFC04574.1| ATPase [Staphylococcus aureus A8117]
          Length = 424

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 61/132 (46%), Gaps = 4/132 (3%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           S +RP+ ++E   Q        +       +   L  ++F GPPG+GKT++A+ ++    
Sbjct: 8   SRMRPKNIDEIISQQHLVGPKGIIRRMVDTKK--LTSMIFYGPPGIGKTSIAKAISGSTQ 65

Query: 80  VNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138
             FR  +     K    L      +  + +L +DEIHRL    ++ L P +E+ ++ +++
Sbjct: 66  YKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKI-VLI 124

Query: 139 GEGPSARSVKIN 150
           G   S     IN
Sbjct: 125 GATTSNPYHAIN 136


>gi|323342313|ref|ZP_08082545.1| AAA family ATPase [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322463425|gb|EFY08619.1| AAA family ATPase [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 419

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 72/156 (46%), Gaps = 16/156 (10%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP T+++  GQ       ++     ++    L  ++F GPPG GKTT A  +A  L   
Sbjct: 9   VRPETIDDIIGQEHLLGENQILRNVVES--GNLHSMIFFGPPGTGKTTTAMAIANSLKRP 66

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
           +R  +  V      L AL    E     V+ IDE+HRL+   ++IL P +E   L  M+G
Sbjct: 67  YRLFNA-VTDNKKKLDALFLEAEMSSGLVVIIDEVHRLNKDKQDILLPHVES-GLITMIG 124

Query: 140 E---------GPSARSVKINLSRFTLIAATTRVGLL 166
                      P+ RS +++L  F  ++    V +L
Sbjct: 125 ATTANPYFSINPAIRS-RVHLFEFKPLSYNNIVSIL 159


>gi|57867117|ref|YP_188766.1| recombination factor protein RarA [Staphylococcus epidermidis
           RP62A]
 gi|251811032|ref|ZP_04825505.1| crossover junction endodeoxyribonuclease ATPase [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|282875948|ref|ZP_06284815.1| recombination factor protein RarA [Staphylococcus epidermidis
           SK135]
 gi|57637775|gb|AAW54563.1| ATPase, AAA family [Staphylococcus epidermidis RP62A]
 gi|251805450|gb|EES58107.1| crossover junction endodeoxyribonuclease ATPase [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|281294973|gb|EFA87500.1| recombination factor protein RarA [Staphylococcus epidermidis
           SK135]
 gi|329735258|gb|EGG71550.1| recombination factor protein RarA [Staphylococcus epidermidis
           VCU045]
 gi|329737108|gb|EGG73362.1| recombination factor protein RarA [Staphylococcus epidermidis
           VCU028]
          Length = 423

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 64/133 (48%), Gaps = 6/133 (4%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           S +RP+ ++E   Q        +       +   L  ++F GPPG+GKT++A+ ++    
Sbjct: 8   SRMRPKNIDEIISQQHLVGPKGIIRRMVDTKR--LSSMIFYGPPGIGKTSIAKAISGSTQ 65

Query: 80  VNFRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
             FR  +  V     D+  ++    +  + +L +DEIHRL    ++ L P +E+ ++ ++
Sbjct: 66  FKFRQLNA-VTNTKKDMQLIVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKI-VL 123

Query: 138 VGEGPSARSVKIN 150
           +G   S     IN
Sbjct: 124 IGATTSNPYHAIN 136


>gi|253756509|ref|YP_003029649.1| ATPase [Streptococcus suis BM407]
 gi|251818973|emb|CAZ56820.1| putative ATPase [Streptococcus suis BM407]
          Length = 428

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 18/126 (14%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP++++E  GQ       K+      A    L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPKSIDEVIGQEHLVGPGKIIRRMIDANM--LSSMILYGPPGIGKTSIASAIAGTTKYA 66

Query: 82  FRSTSGPV--------IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           FR+ +           IA+    +  L       VL +DEIHRL+   ++ L P +E+  
Sbjct: 67  FRTFNATTDNQKRLQEIAEEAKFSGGL-------VLLLDEIHRLNKTKQDFLLPLLENGN 119

Query: 134 LDLMVG 139
           + +M+G
Sbjct: 120 I-IMIG 124


>gi|258448784|ref|ZP_05696896.1| recombination protein MgsA [Staphylococcus aureus A6224]
 gi|257858062|gb|EEV80951.1| recombination protein MgsA [Staphylococcus aureus A6224]
          Length = 424

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 61/132 (46%), Gaps = 4/132 (3%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           S +RP+ ++E   Q        +       +   L  ++F GPPG+GKT++A+ ++    
Sbjct: 8   SRMRPKNIDEIISQQHLVGPKGIIRRMVDTKK--LTSMIFYGPPGIGKTSIAKAISGSTQ 65

Query: 80  VNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138
             FR  +     K    L      +  + +L +DEIHRL    ++ L P +E+ ++ +++
Sbjct: 66  YKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKI-VLI 124

Query: 139 GEGPSARSVKIN 150
           G   S     IN
Sbjct: 125 GATTSNPYHAIN 136


>gi|223934153|ref|ZP_03626095.1| AAA ATPase central domain protein [Streptococcus suis 89/1591]
 gi|330833714|ref|YP_004402539.1| AAA ATPase central domain-containing protein [Streptococcus suis
           ST3]
 gi|223897175|gb|EEF63594.1| AAA ATPase central domain protein [Streptococcus suis 89/1591]
 gi|329307937|gb|AEB82353.1| AAA ATPase central domain protein [Streptococcus suis ST3]
          Length = 428

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 18/126 (14%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP++++E  GQ       K+      A    L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPKSIDEVIGQEHLVGPGKIIRRMIDANM--LSSMILYGPPGIGKTSIASAIAGTTKYA 66

Query: 82  FRSTSGPV--------IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           FR+ +           IA+    +  L       VL +DEIHRL+   ++ L P +E+  
Sbjct: 67  FRTFNATTDNQKRLQEIAEEAKFSGGL-------VLMLDEIHRLNKTKQDFLLPLLENGN 119

Query: 134 LDLMVG 139
           + +M+G
Sbjct: 120 I-IMIG 124


>gi|326336426|ref|ZP_08202596.1| AAA family ATPase [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325691299|gb|EGD33268.1| AAA family ATPase [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 428

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 53/108 (49%), Gaps = 13/108 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG---------PVIAKAGDLAALLTNLEDRD 107
           ++F GPPG GKTTLA ++A+E    F S S           +I K+     L T      
Sbjct: 44  LIFWGPPGTGKTTLAYIIAKEGQRTFFSLSAISSGIKEVRDIIEKSKREQGLFT--PKNP 101

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSR 153
           ++FIDEIHR +   ++ L  A+E   + L+    E PS   +   LSR
Sbjct: 102 IIFIDEIHRFNKTQQDSLLEAVERGWVTLIGATTENPSFEVIPALLSR 149


>gi|258420199|ref|ZP_05683154.1| recombination protein MgsA [Staphylococcus aureus A9719]
 gi|257843910|gb|EEV68304.1| recombination protein MgsA [Staphylococcus aureus A9719]
          Length = 424

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 61/132 (46%), Gaps = 4/132 (3%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           S +RP+ ++E   Q        +       +   L  ++F GPPG+GKT++A+ ++    
Sbjct: 8   SRMRPKNIDEIISQQHLVGPKGIIRRMVDTKK--LTSMIFYGPPGIGKTSIAKAISGSTQ 65

Query: 80  VNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138
             FR  +     K    L      +  + +L +DEIHRL    ++ L P +E+ ++ +++
Sbjct: 66  YKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKI-VLI 124

Query: 139 GEGPSARSVKIN 150
           G   S     IN
Sbjct: 125 GATTSNPYHAIN 136


>gi|146319767|ref|YP_001199479.1| recombination factor protein RarA [Streptococcus suis 05ZYH33]
 gi|146321966|ref|YP_001201677.1| recombination factor protein RarA [Streptococcus suis 98HAH33]
 gi|253752751|ref|YP_003025892.1| ATPase [Streptococcus suis SC84]
 gi|253754576|ref|YP_003027717.1| ATPase [Streptococcus suis P1/7]
 gi|145690573|gb|ABP91079.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [Streptococcus suis 05ZYH33]
 gi|145692772|gb|ABP93277.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [Streptococcus suis 98HAH33]
 gi|251817040|emb|CAZ52692.1| putative ATPase [Streptococcus suis SC84]
 gi|251820822|emb|CAR47588.1| putative ATPase [Streptococcus suis P1/7]
 gi|292559374|gb|ADE32375.1| putative ATPase [Streptococcus suis GZ1]
 gi|319759169|gb|ADV71111.1| recombination factor protein RarA [Streptococcus suis JS14]
          Length = 428

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 18/126 (14%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP++++E  GQ       K+      A    L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPKSIDEVIGQEHLVGPGKIIRRMIDANM--LSSMILYGPPGIGKTSIASAIAGTTKYA 66

Query: 82  FRSTSGPV--------IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           FR+ +           IA+    +  L       VL +DEIHRL+   ++ L P +E+  
Sbjct: 67  FRTFNATTDNQKRLQEIAEEAKFSGGL-------VLLLDEIHRLNKTKQDFLLPLLENGN 119

Query: 134 LDLMVG 139
           + +M+G
Sbjct: 120 I-IMIG 124


>gi|49483872|ref|YP_041096.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|257425751|ref|ZP_05602175.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257428411|ref|ZP_05604809.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257431049|ref|ZP_05607428.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257433735|ref|ZP_05610093.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257436650|ref|ZP_05612694.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus M876]
 gi|282904207|ref|ZP_06312095.1| ATPase, AAA family [Staphylococcus aureus subsp. aureus C160]
 gi|282906033|ref|ZP_06313888.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282908947|ref|ZP_06316765.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282911264|ref|ZP_06319066.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282914432|ref|ZP_06322218.1| ATPase, AAA family [Staphylococcus aureus subsp. aureus M899]
 gi|282919401|ref|ZP_06327136.1| ATPase [Staphylococcus aureus subsp. aureus C427]
 gi|282924726|ref|ZP_06332394.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           C101]
 gi|283958387|ref|ZP_06375838.1| ATPase, AAA family [Staphylococcus aureus subsp. aureus A017934/97]
 gi|293503506|ref|ZP_06667353.1| ATPase [Staphylococcus aureus subsp. aureus 58-424]
 gi|293510524|ref|ZP_06669230.1| AAA domain-containing protein yrvN [Staphylococcus aureus subsp.
           aureus M809]
 gi|293531064|ref|ZP_06671746.1| ATPase, AAA family [Staphylococcus aureus subsp. aureus M1015]
 gi|297590829|ref|ZP_06949467.1| AAA family ATPase [Staphylococcus aureus subsp. aureus MN8]
 gi|49242001|emb|CAG40698.1| putative ATPase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257271445|gb|EEV03591.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257275252|gb|EEV06739.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257278252|gb|EEV08894.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257281828|gb|EEV11965.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257284001|gb|EEV14124.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus M876]
 gi|282313561|gb|EFB43956.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           C101]
 gi|282317211|gb|EFB47585.1| ATPase [Staphylococcus aureus subsp. aureus C427]
 gi|282321613|gb|EFB51938.1| ATPase, AAA family [Staphylococcus aureus subsp. aureus M899]
 gi|282324959|gb|EFB55269.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282327211|gb|EFB57506.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282331325|gb|EFB60839.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282595825|gb|EFC00789.1| ATPase, AAA family [Staphylococcus aureus subsp. aureus C160]
 gi|283790536|gb|EFC29353.1| ATPase, AAA family [Staphylococcus aureus subsp. aureus A017934/97]
 gi|290920332|gb|EFD97398.1| ATPase, AAA family [Staphylococcus aureus subsp. aureus M1015]
 gi|291095172|gb|EFE25437.1| ATPase [Staphylococcus aureus subsp. aureus 58-424]
 gi|291466888|gb|EFF09408.1| AAA domain-containing protein yrvN [Staphylococcus aureus subsp.
           aureus M809]
 gi|297575715|gb|EFH94431.1| AAA family ATPase [Staphylococcus aureus subsp. aureus MN8]
 gi|312437905|gb|ADQ76976.1| AAA family ATPase [Staphylococcus aureus subsp. aureus TCH60]
 gi|315195528|gb|EFU25915.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus CGS00]
          Length = 424

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 61/132 (46%), Gaps = 4/132 (3%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           S +RP+ ++E   Q        +       +   L  ++F GPPG+GKT++A+ ++    
Sbjct: 8   SRMRPKNIDEIISQQHLVGPRGIIRRMVDTKK--LTSMIFYGPPGIGKTSIAKAISGSTQ 65

Query: 80  VNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138
             FR  +     K    L      +  + +L +DEIHRL    ++ L P +E+ ++ +++
Sbjct: 66  YKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKI-VLI 124

Query: 139 GEGPSARSVKIN 150
           G   S     IN
Sbjct: 125 GATTSNPYHAIN 136


>gi|226290033|gb|EEH45517.1| DNA-dependent ATPase MGS1 [Paracoccidioides brasiliensis Pb18]
          Length = 553

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 73/148 (49%), Gaps = 18/148 (12%)

Query: 22  LRPRTLEEFTGQ--VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +RP+TL++  GQ  V     L+  IE  +  +     ++  G  G GKTT+A+V+A+ +G
Sbjct: 141 MRPQTLDDVCGQELVGPSGVLRGLIEQDRVPS-----MVLWGGAGTGKTTIARVIAKMVG 195

Query: 80  VNFR--STSGPVIAKAGDLAALLTN----LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             F   +++   +A+   L A   N       + +LF DEIHR S   +++    +E  Q
Sbjct: 196 SRFVEINSTNSGVAECKKLFAEARNELSLSGKKTILFCDEIHRFSKSQQDVFLSPVESGQ 255

Query: 134 LDLM--VGEGPSARSVKINLSR---FTL 156
           + L+    E PS +     LSR   FTL
Sbjct: 256 ITLIGTTTENPSFKVQNALLSRCRTFTL 283


>gi|225682615|gb|EEH20899.1| DNA-dependent ATPase MGS1 [Paracoccidioides brasiliensis Pb03]
          Length = 553

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 74/152 (48%), Gaps = 18/152 (11%)

Query: 22  LRPRTLEEFTGQ--VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +RP+TL++  GQ  V     L+  IE  +  +     ++  G  G GKTT+A+V+A+ +G
Sbjct: 141 MRPQTLDDVCGQELVGPSGVLRGLIEQDRVPS-----MVLWGGAGTGKTTIARVIAKMVG 195

Query: 80  VNFR--STSGPVIAKAGDLAALLTN----LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             F   +++   +A+   L A   N       + +LF DEIHR S   +++    +E  Q
Sbjct: 196 SRFVEINSTNSGVAECKKLFAEARNELSLSGKKTILFCDEIHRFSKSQQDVFLSPVESGQ 255

Query: 134 LDLM--VGEGPSARSVKINLSR---FTLIAAT 160
           + L+    E PS +     LSR   FTL   T
Sbjct: 256 ITLIGTTTENPSFKVQNALLSRCRTFTLSKLT 287


>gi|121707934|ref|XP_001271981.1| AAA family ATPase, putative [Aspergillus clavatus NRRL 1]
 gi|119400129|gb|EAW10555.1| AAA family ATPase, putative [Aspergillus clavatus NRRL 1]
          Length = 539

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 72/154 (46%), Gaps = 18/154 (11%)

Query: 22  LRPRTLEEFTGQ--VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +RP+TL+E  GQ  V     L+  IE  +     +  ++  G  G GKTT+A+V+A  +G
Sbjct: 126 MRPQTLDEVCGQELVGPKGVLRGLIEQDR-----VPSMILWGHAGTGKTTIARVIASMVG 180

Query: 80  VNF---RSTSGPVIAKAGDLAALLTNLE---DRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             F    STS  V       A   + L     + ++F DEIHR S   +++    +E  Q
Sbjct: 181 SRFVEINSTSSGVAECKKIFAEARSELNLTGRKTIIFCDEIHRFSKSQQDVFLGPVESGQ 240

Query: 134 LDLM--VGEGPSARSVKINLSR---FTLIAATTR 162
           + L+    E PS +     LSR   FTL   T R
Sbjct: 241 VTLIGATTENPSFKVQNALLSRCRTFTLSKLTDR 274


>gi|282916895|ref|ZP_06324653.1| ATPase [Staphylococcus aureus subsp. aureus D139]
 gi|283770701|ref|ZP_06343593.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus H19]
 gi|282319382|gb|EFB49734.1| ATPase [Staphylococcus aureus subsp. aureus D139]
 gi|283460848|gb|EFC07938.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus H19]
          Length = 424

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 61/132 (46%), Gaps = 4/132 (3%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           S +RP+ ++E   Q        +       +   L  ++F GPPG+GKT++A+ ++    
Sbjct: 8   SRMRPKNIDEIISQQHLVGPRGIIRRMVDTKK--LTSMIFYGPPGIGKTSIAKAISGSTQ 65

Query: 80  VNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138
             FR  +     K    L      +  + +L +DEIHRL    ++ L P +E+ ++ +++
Sbjct: 66  YKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKI-VLI 124

Query: 139 GEGPSARSVKIN 150
           G   S     IN
Sbjct: 125 GATTSNPYHAIN 136


>gi|153840138|ref|ZP_01992805.1| ATPase, AAA family [Vibrio parahaemolyticus AQ3810]
 gi|149746235|gb|EDM57329.1| ATPase, AAA family [Vibrio parahaemolyticus AQ3810]
          Length = 423

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 66/148 (44%), Gaps = 11/148 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+T+ ++ GQ       K    A +A    +  ++  GPPG GKTTLA+V A      
Sbjct: 21  MRPQTIGQYIGQQHILGPGKPLRRALEAGH--VHSMILWGPPGTGKTTLAEVAANYANAE 78

Query: 82  FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
               S  V +   ++ A +    +      R +LF+DE+HR +   ++   P +ED  + 
Sbjct: 79  VERVSA-VTSGVKEIRAAIEKARENKMAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVT 137

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATT 161
            +    E PS       LSR  +   T+
Sbjct: 138 FIGATTENPSFELNNALLSRARVYKLTS 165


>gi|157103374|ref|XP_001647950.1| werner helicase interacting protein [Aedes aegypti]
 gi|108884173|gb|EAT48398.1| werner helicase interacting protein [Aedes aegypti]
          Length = 560

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 73/161 (45%), Gaps = 22/161 (13%)

Query: 14  QEDADISL---LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGK 67
           +E ++I L   +RP  L ++ GQ +       L+   E        +  ++  GPPG GK
Sbjct: 131 EEGSNIPLAEKMRPDELSDYIGQEQIIGKNTVLRTLFEK-----NTIPSMILWGPPGCGK 185

Query: 68  TTLAQVVARELG-------VNFRSTSGPV--IAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
           TTLA ++A           V   +T   V  + +A  LA      + + ++F+DEIHR +
Sbjct: 186 TTLAHIIAAHCKKHGSMKFVKLSATMSGVNDVKEAVKLAKNDLAFKRKTIMFMDEIHRFN 245

Query: 119 IIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLI 157
            + ++I  P +E   + L+    E PS       LSR  +I
Sbjct: 246 KLQQDIFLPHVESGTITLIGATTENPSFSLNSALLSRCRVI 286


>gi|319400954|gb|EFV89173.1| ATPase family associated with various cellular activities (AAA)
           family protein [Staphylococcus epidermidis FRI909]
          Length = 423

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 61/132 (46%), Gaps = 4/132 (3%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           S +RP+ ++E   Q        +       +   L  ++F GPPG+GKT++A+ ++    
Sbjct: 8   SRMRPKNIDEIISQQHLVGPKGIIRRMVDTKR--LSSMIFYGPPGIGKTSIAKAISGSTQ 65

Query: 80  VNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138
             FR  +     K    L      +  + +L +DEIHRL    ++ L P +E+ ++ +++
Sbjct: 66  FKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKI-VLI 124

Query: 139 GEGPSARSVKIN 150
           G   S     IN
Sbjct: 125 GATTSNPYHAIN 136


>gi|314933792|ref|ZP_07841157.1| ATPase, AAA family [Staphylococcus caprae C87]
 gi|313653942|gb|EFS17699.1| ATPase, AAA family [Staphylococcus caprae C87]
          Length = 422

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 65/133 (48%), Gaps = 6/133 (4%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           S +RP  ++E   Q     +  +     + +   L  ++F GPPG+GKT++A+ ++    
Sbjct: 8   SRMRPMNIDEIISQQHLVGSKGIIRRMVETKR--LSSMIFYGPPGIGKTSIAKAISGSTQ 65

Query: 80  VNFRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
             FR  +  V     D+  ++    +  + +L +DEIHRL    ++ L P +E+ ++ ++
Sbjct: 66  FKFRQLNA-VTNTKKDMQMVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKI-VL 123

Query: 138 VGEGPSARSVKIN 150
           +G   S     IN
Sbjct: 124 IGATTSNPYHAIN 136


>gi|242242900|ref|ZP_04797345.1| crossover junction endodeoxyribonuclease ATPase [Staphylococcus
           epidermidis W23144]
 gi|242233675|gb|EES35987.1| crossover junction endodeoxyribonuclease ATPase [Staphylococcus
           epidermidis W23144]
          Length = 423

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 61/132 (46%), Gaps = 4/132 (3%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           S +RP+ ++E   Q        +       +   L  ++F GPPG+GKT++A+ ++    
Sbjct: 8   SRMRPKNIDEIISQQHLVGPKGIIRRMVDTKR--LSSMIFYGPPGIGKTSIAKAISGSTQ 65

Query: 80  VNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138
             FR  +     K    L      +  + +L +DEIHRL    ++ L P +E+ ++ +++
Sbjct: 66  FKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKI-VLI 124

Query: 139 GEGPSARSVKIN 150
           G   S     IN
Sbjct: 125 GATTSNPYHAIN 136


>gi|170744408|ref|YP_001773063.1| recombination factor protein RarA [Methylobacterium sp. 4-46]
 gi|168198682|gb|ACA20629.1| AAA ATPase central domain protein [Methylobacterium sp. 4-46]
          Length = 437

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 59/130 (45%), Gaps = 11/130 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP +L E  GQ                R  +L  ++  GPPG GKTT+A+++ARE  ++
Sbjct: 22  LRPTSLAEVVGQEHLTGEGGALTRLL--RGGSLGSLILWGPPGTGKTTVARLLARETALH 79

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F   S  + +   +L  +      R       +LF+DEIHR +    +   P  ED  + 
Sbjct: 80  FEQISA-IFSGVAELRKVFEAARARRAAGQGTLLFVDEIHRFNRAQLDAFLPVTEDGTVT 138

Query: 136 LM--VGEGPS 143
           L+    E PS
Sbjct: 139 LVGATTENPS 148


>gi|91775481|ref|YP_545237.1| recombination factor protein RarA [Methylobacillus flagellatus KT]
 gi|91709468|gb|ABE49396.1| Recombination protein MgsA [Methylobacillus flagellatus KT]
          Length = 440

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 16/119 (13%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP++L+E  GQ         L++   + K     L  ++  GPPG+GKTTLA+++A   
Sbjct: 18  LRPKSLDEVVGQRHLLGEGKPLRLAFTSGK-----LPSMILWGPPGVGKTTLARLIANTA 72

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAME 130
              F   S  V+A   D+   +   E        R +LF+DE+HR +   ++   P +E
Sbjct: 73  DAEFIPLSA-VLAGIKDIREAVERAEHTLQQSGRRTILFVDEVHRFNKGQQDAFLPFVE 130


>gi|254775881|ref|ZP_05217397.1| recombination factor protein RarA [Mycobacterium avium subsp. avium
           ATCC 25291]
          Length = 391

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 73/145 (50%), Gaps = 30/145 (20%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFI 111
           +  GPPG GKTTLA ++++  G  F + S  + A   D+ A++ +        ++ VLFI
Sbjct: 10  ILYGPPGSGKTTLAALISQATGRRFEALSA-LSAGVKDVRAVIESARTALLRGEQTVLFI 68

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVG--EGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+HR S   ++ L  A+E+  + L+    E PS          F+++A          P
Sbjct: 69  DEVHRFSKTQQDALLSAVENRVVLLVAATTENPS----------FSVVA----------P 108

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQR 194
           L  R  I ++L     +D++T+V+R
Sbjct: 109 LLSRSLI-LQLRPLSADDIRTVVRR 132


>gi|241955893|ref|XP_002420667.1| AAA ATPase family member, putative; replication factor C (RF-C)
          subunit, putative [Candida dubliniensis CD36]
 gi|223644009|emb|CAX41749.1| AAA ATPase family member, putative [Candida dubliniensis CD36]
          Length = 339

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 7/63 (11%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL--GV 80
          RP  LEE  GQ E    ++ F+E  K     L H+LF GPPG GKT+    +A+E+   +
Sbjct: 16 RPDNLEEVKGQQEIVDTVRKFVETRK-----LPHLLFYGPPGTGKTSTIIALAKEIYGSI 70

Query: 81 NFR 83
          N++
Sbjct: 71 NYK 73


>gi|21283306|ref|NP_646394.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus MW2]
 gi|49486460|ref|YP_043681.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|258424053|ref|ZP_05686935.1| recombination factor protein RarA [Staphylococcus aureus A9635]
 gi|297207652|ref|ZP_06924087.1| AAA family ATPase [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300911734|ref|ZP_07129177.1| AAA family ATPase [Staphylococcus aureus subsp. aureus TCH70]
 gi|21204746|dbj|BAB95442.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49244903|emb|CAG43364.1| putative ATPase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|257845674|gb|EEV69706.1| recombination factor protein RarA [Staphylococcus aureus A9635]
 gi|283470904|emb|CAQ50115.1| ATPase, AAA family [Staphylococcus aureus subsp. aureus ST398]
 gi|296887669|gb|EFH26567.1| AAA family ATPase [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300885980|gb|EFK81182.1| AAA family ATPase [Staphylococcus aureus subsp. aureus TCH70]
 gi|329733071|gb|EGG69408.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 424

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 61/132 (46%), Gaps = 4/132 (3%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           S +RP+ ++E   Q        +       +   L  ++F GPPG+GKT++A+ ++    
Sbjct: 8   SRMRPKNIDEIISQQHLVGPRGIIRRMVDTKK--LTSMIFYGPPGIGKTSIAKAISGSTQ 65

Query: 80  VNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138
             FR  +     K    L      +  + +L +DEIHRL    ++ L P +E+ ++ +++
Sbjct: 66  YKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKI-VLI 124

Query: 139 GEGPSARSVKIN 150
           G   S     IN
Sbjct: 125 GATTSNPYHAIN 136


>gi|303244085|ref|ZP_07330423.1| Replication factor C [Methanothermococcus okinawensis IH1]
 gi|302485470|gb|EFL48396.1| Replication factor C [Methanothermococcus okinawensis IH1]
          Length = 883

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 52/96 (54%), Gaps = 14/96 (14%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK--TTLAQVVARELGV 80
           RP+TL+E TG  E    LK ++     + +++ H+LF GPPG+GK  T   +V+      
Sbjct: 10  RPKTLDEITGHDEIIKRLKSYV-----KKKSMPHMLFSGPPGVGKCLTGDTKVIVNNKIE 64

Query: 81  NFRSTSGPVIAKAGD---LAALLTNLEDRDVLFIDE 113
           N     G ++ K  +    A L++N +D +VL IDE
Sbjct: 65  NL----GDIVEKISNGRFGATLVSNPKDLNVLGIDE 96


>gi|57650509|ref|YP_186522.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus COL]
 gi|151221741|ref|YP_001332563.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|161353524|ref|YP_500242.2| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|162138568|ref|YP_494279.2| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|221141103|ref|ZP_03565596.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|253733121|ref|ZP_04867286.1| crossover junction endodeoxyribonuclease ATPase [Staphylococcus
           aureus subsp. aureus TCH130]
 gi|258450546|ref|ZP_05698608.1| recombination factor protein RarA [Staphylococcus aureus A5948]
 gi|262048620|ref|ZP_06021503.1| hypothetical protein SAD30_1016 [Staphylococcus aureus D30]
 gi|262051167|ref|ZP_06023391.1| hypothetical protein SA930_1598 [Staphylococcus aureus 930918-3]
 gi|282920175|ref|ZP_06327900.1| conserved hypothetical AAA domain-containing protein yrvN
           [Staphylococcus aureus A9765]
 gi|284024684|ref|ZP_06379082.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus 132]
 gi|304380776|ref|ZP_07363443.1| AAA family ATPase [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|57284695|gb|AAW36789.1| ATPase, AAA family [Staphylococcus aureus subsp. aureus COL]
 gi|150374541|dbj|BAF67801.1| ATPase AAA family protein [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|253728877|gb|EES97606.1| crossover junction endodeoxyribonuclease ATPase [Staphylococcus
           aureus subsp. aureus TCH130]
 gi|257861704|gb|EEV84503.1| recombination factor protein RarA [Staphylococcus aureus A5948]
 gi|259160804|gb|EEW45824.1| hypothetical protein SA930_1598 [Staphylococcus aureus 930918-3]
 gi|259163267|gb|EEW47826.1| hypothetical protein SAD30_1016 [Staphylococcus aureus D30]
 gi|269941113|emb|CBI49499.1| putative ATPase [Staphylococcus aureus subsp. aureus TW20]
 gi|282594523|gb|EFB99508.1| conserved hypothetical AAA domain-containing protein yrvN
           [Staphylococcus aureus A9765]
 gi|302751456|gb|ADL65633.1| DNA-directed DNA polymerase III gamma and tau subunits
           [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|304340652|gb|EFM06585.1| AAA family ATPase [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|315198674|gb|EFU29002.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus CGS01]
 gi|329314302|gb|AEB88715.1| ATPase [Staphylococcus aureus subsp. aureus T0131]
 gi|329728332|gb|EGG64769.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus 21189]
          Length = 424

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 61/132 (46%), Gaps = 4/132 (3%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           S +RP+ ++E   Q        +       +   L  ++F GPPG+GKT++A+ ++    
Sbjct: 8   SRMRPKNIDEIISQQHLVGPRGIIRRMVDTKK--LTSMIFYGPPGIGKTSIAKAISGSTQ 65

Query: 80  VNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138
             FR  +     K    L      +  + +L +DEIHRL    ++ L P +E+ ++ +++
Sbjct: 66  YKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKI-VLI 124

Query: 139 GEGPSARSVKIN 150
           G   S     IN
Sbjct: 125 GATTSNPYHAIN 136


>gi|329724701|gb|EGG61207.1| recombination factor protein RarA [Staphylococcus epidermidis
           VCU144]
          Length = 423

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 61/132 (46%), Gaps = 4/132 (3%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           S +RP+ ++E   Q        +       +   L  ++F GPPG+GKT++A+ ++    
Sbjct: 8   SRMRPKNIDEIISQQHLVGPKGIIRRMVDTKR--LSSMIFYGPPGIGKTSIAKAISGSTQ 65

Query: 80  VNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138
             FR  +     K    L      +  + +L +DEIHRL    ++ L P +E+ ++ +++
Sbjct: 66  FKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKI-VLI 124

Query: 139 GEGPSARSVKIN 150
           G   S     IN
Sbjct: 125 GATTSNPYHAIN 136


>gi|302333301|gb|ADL23494.1| DNA-directed DNA polymerase III gamma and tau subunits
           [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 424

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 61/132 (46%), Gaps = 4/132 (3%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           S +RP+ ++E   Q        +       +   L  ++F GPPG+GKT++A+ ++    
Sbjct: 8   SRMRPKNIDEIISQQHLVGPRGIIRRMVDTKK--LTSMIFYGPPGIGKTSIAKAISGSTQ 65

Query: 80  VNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138
             FR  +     K    L      +  + +L +DEIHRL    ++ L P +E+ ++ +++
Sbjct: 66  YKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKI-VLI 124

Query: 139 GEGPSARSVKIN 150
           G   S     IN
Sbjct: 125 GATTSNPYHAIN 136


>gi|260945583|ref|XP_002617089.1| hypothetical protein CLUG_02533 [Clavispora lusitaniae ATCC 42720]
 gi|238848943|gb|EEQ38407.1| hypothetical protein CLUG_02533 [Clavispora lusitaniae ATCC 42720]
          Length = 548

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 68/153 (44%), Gaps = 17/153 (11%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           ++RP +L+++ GQ     +    I +       L  ++  GPPG+GKTTLA ++A E   
Sbjct: 22  IIRPSSLKDYVGQEHLIDSDDGAISSFLTLG-ILPSMILYGPPGVGKTTLAHILAAETNH 80

Query: 81  NFRSTSGPVIAKAGDLAALLT-------------NLEDRDVLFIDEIHRLSIIVEEILYP 127
            F   S    +  GD+  +               +L  + V+FIDEIHR S   ++ L P
Sbjct: 81  VFLELSA-TDSTIGDMREISQAIRQENGKRDRSGDLHLKVVVFIDEIHRFSTTQQDFLLP 139

Query: 128 AME--DFQLDLMVGEGPSARSVKINLSRFTLIA 158
            +E  DF         P  R  +  LSR  L +
Sbjct: 140 FVEAGDFVFIGATTVNPEKRIRRAILSRCQLFS 172


>gi|313885143|ref|ZP_07818895.1| ATPase, AAA family [Eremococcus coleocola ACS-139-V-Col8]
 gi|312619834|gb|EFR31271.1| ATPase, AAA family [Eremococcus coleocola ACS-139-V-Col8]
          Length = 424

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 63/130 (48%), Gaps = 4/130 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ +++  GQ       ++     +A    L  ++  GPPG GKT++A  +A      
Sbjct: 9   MRPQDIDQVLGQEHLVGPGRIIRRMVQANR--LTSMILYGPPGTGKTSIATAIAGTTHYA 66

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR  +    +K   ++A     +    +L +DEIHRL+ + ++ L P +E  +L +++G 
Sbjct: 67  FRQLNAATDSKKDLEIAVEEAKMSGTLILLLDEIHRLNKVKQDFLLPHLESGRL-ILIGA 125

Query: 141 GPSARSVKIN 150
                 + IN
Sbjct: 126 TTENPYISIN 135


>gi|145594367|ref|YP_001158664.1| recombination factor protein RarA [Salinispora tropica CNB-440]
 gi|145303704|gb|ABP54286.1| Recombination protein MgsA [Salinispora tropica CNB-440]
          Length = 477

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 73/156 (46%), Gaps = 19/156 (12%)

Query: 15  EDADISL-LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           +DA +++ +RP  L+E  GQ       + L   +  A   +     V+  GPPG GKTT+
Sbjct: 9   DDAPLAVRMRPTGLDELIGQDHLRAPGAPLHQLVSGAAPMS-----VILWGPPGSGKTTI 63

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEE 123
           A +VA      F + S  + A   D+ A++            + VLFIDE+HR S   ++
Sbjct: 64  AHLVAGATDRRFVAMSA-LNAGVKDVRAVIDAARRQRRAGGPQTVLFIDEVHRFSKTQQD 122

Query: 124 ILYPAMEDFQLDLMVG--EGPSARSVKINLSRFTLI 157
            L  A+ED  + L+    E P    +   LSR  L+
Sbjct: 123 SLLAAVEDRTVTLLAATTENPYFSVISPLLSRCVLL 158


>gi|296114938|ref|ZP_06833584.1| recombination factor protein RarA [Gluconacetobacter hansenii ATCC
           23769]
 gi|295978496|gb|EFG85228.1| recombination factor protein RarA [Gluconacetobacter hansenii ATCC
           23769]
          Length = 466

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 70/148 (47%), Gaps = 19/148 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP TL++  GQ   +     L + +     R  +L  ++  G PG+GKTT+A+++A   
Sbjct: 54  LRPETLDQVVGQDHLLGPEGTLSLML-----RHHSLASLILWGGPGVGKTTIARLLAHAA 108

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDF 132
           G+ F   S  V +   DL         R       +LF+DEIHR +   ++   P +ED 
Sbjct: 109 GLRFVQISA-VFSGVADLKRAFEEARRRAANGEGTLLFVDEIHRFNRAQQDGFLPVVEDG 167

Query: 133 QLDLMVGEGPSARSVKIN---LSRFTLI 157
            + ++VG      S  +N   LSR  ++
Sbjct: 168 TV-VLVGATTENPSFALNGALLSRCQVL 194


>gi|324990429|gb|EGC22367.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
           SK353]
          Length = 422

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  +++  GQ     + K+     +A    L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPTDIDQIIGQQHLVGSGKIIRRMVEA--NRLSSIILYGPPGIGKTSIASAIAGTTKFA 66

Query: 82  FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +  V +K       + A     L    VL +DEIHRL    ++ L P +E   L +
Sbjct: 67  FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121

Query: 137 MVG 139
           M+G
Sbjct: 122 MIG 124


>gi|144897128|emb|CAM73992.1| Holliday junction resolvasome, helicase subunit [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 52

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 28/34 (82%)

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++EPY++QQG IQRTPRGR+L    ++H+G++ P
Sbjct: 1   MVEPYLLQQGLIQRTPRGRMLSTAGFKHIGLNPP 34


>gi|253996802|ref|YP_003048866.1| recombination factor protein RarA [Methylotenera mobilis JLW8]
 gi|253983481|gb|ACT48339.1| AAA ATPase central domain protein [Methylotenera mobilis JLW8]
          Length = 435

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 59/118 (50%), Gaps = 14/118 (11%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+ L+E  GQ         L++  ++ K     L  ++  GPPG+GKTTLA+++A   
Sbjct: 18  LRPKALDEVVGQSHLLGTGKPLRLAFQSGK-----LPSMILWGPPGVGKTTLARLIANTA 72

Query: 79  GVNFRSTSGPV-----IAKAGDLAA-LLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
              F   S  +     I +A +LA   L     + +LF+DE+HR +   ++   P +E
Sbjct: 73  DAEFIPISAVLSGIKDIREAVELAEHTLQQHRRKTILFVDEVHRFNKGQQDAFLPFVE 130


>gi|296111080|ref|YP_003621461.1| chromosome segregation helicase (putative) [Leuconostoc kimchii
           IMSNU 11154]
 gi|295832611|gb|ADG40492.1| chromosome segregation helicase (putative) [Leuconostoc kimchii
           IMSNU 11154]
          Length = 428

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 6/132 (4%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  +E+  GQ       K+      A    L  ++  GPPG GKT++A  +A      
Sbjct: 9   MRPTKIEDIVGQTHLVGEGKIIRRMVDAMR--LSSMILYGPPGTGKTSIASAIAGSSKYA 66

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR  +    ++    + A    +    VL +DEIHRL+ + ++ L P +E   + L+   
Sbjct: 67  FRMLNAATDSQKDLQIVAEEAKMSGTVVLLLDEIHRLNKVKQDFLLPHLESGSIILI--- 123

Query: 141 GPSARSVKINLS 152
           G +  +  IN++
Sbjct: 124 GATTENPYINVT 135


>gi|289192746|ref|YP_003458687.1| AAA ATPase central domain protein [Methanocaldococcus sp. FS406-22]
 gi|288939196|gb|ADC69951.1| AAA ATPase central domain protein [Methanocaldococcus sp. FS406-22]
          Length = 515

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 51/103 (49%), Gaps = 8/103 (7%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP++L+E  G  +    LK +IE+   + E    +L VGPPG GKTTLA  +A + G   
Sbjct: 9   RPKSLKEVAGHDKVKEKLKTWIESY-LKGEHPKPILLVGPPGCGKTTLAYALANDYGFEV 67

Query: 83  ------RSTSGPVIAKAGDLAALLTNLEDRDVLFI-DEIHRLS 118
                    S  VI K    AA  +++  +  L I DE+  +S
Sbjct: 68  IELNASDKRSASVIKKVVGHAATSSSIFGKKFLIILDEVDGIS 110


>gi|297620154|ref|YP_003708259.1| Replication factor C [Methanococcus voltae A3]
 gi|297379131|gb|ADI37286.1| Replication factor C [Methanococcus voltae A3]
          Length = 314

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 6/64 (9%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81
          RP TL E  GQ E    LK ++E      +++ H+LF G PG+GKTT A  +A++L G +
Sbjct: 10 RPTTLSEIVGQKEIIERLKNYVEK-----QSMPHLLFSGSPGIGKTTAALCLAKDLYGDD 64

Query: 82 FRST 85
          +R  
Sbjct: 65 WREN 68


>gi|256811408|ref|YP_003128777.1| AAA ATPase central domain protein [Methanocaldococcus fervens
          AG86]
 gi|256794608|gb|ACV25277.1| AAA ATPase central domain protein [Methanocaldococcus fervens
          AG86]
          Length = 488

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 1/57 (1%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
          RP++L+E  G  +    LK +IE+   R E    +L VGPPG GKTTLA  +A + G
Sbjct: 9  RPKSLKEVAGHDKVKERLKTWIESY-LRGENPKPILLVGPPGCGKTTLAYALANDYG 64


>gi|225389280|ref|ZP_03759004.1| hypothetical protein CLOSTASPAR_03026 [Clostridium asparagiforme
           DSM 15981]
 gi|225044659|gb|EEG54905.1| hypothetical protein CLOSTASPAR_03026 [Clostridium asparagiforme
           DSM 15981]
          Length = 438

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 60/130 (46%), Gaps = 28/130 (21%)

Query: 17  ADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEALDHV---------LFVGP 62
           +DI LL+P+ ++ F      GQ EA   L V +     R  A  HV         L +GP
Sbjct: 63  SDIRLLKPKEIKTFLDEYVIGQDEAKKVLSVAVYNHYKRVTACQHVDVDVQKSNILMIGP 122

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---EDRD-------V 108
            G GKT LAQ +A+ L V F       + +AG    D+  +L  L    D D       +
Sbjct: 123 TGSGKTYLAQTLAKILNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDIARAEYGI 182

Query: 109 LFIDEIHRLS 118
           ++IDEI +++
Sbjct: 183 IYIDEIDKIT 192


>gi|288931716|ref|YP_003435776.1| Replication factor C [Ferroglobus placidus DSM 10642]
 gi|288893964|gb|ADC65501.1| Replication factor C [Ferroglobus placidus DSM 10642]
          Length = 321

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 5/60 (8%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          +   RP+TL+E  GQ E    LK ++     + + + H+LF GPPG GKT  A  +AR+L
Sbjct: 7  VEKYRPKTLDEVVGQDEIIQRLKSYV-----KQKNIPHLLFAGPPGTGKTATAIALARDL 61


>gi|45185047|ref|NP_982764.1| ABL183Wp [Ashbya gossypii ATCC 10895]
 gi|44980683|gb|AAS50588.1| ABL183Wp [Ashbya gossypii ATCC 10895]
          Length = 547

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 70/148 (47%), Gaps = 17/148 (11%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPR L E+ GQ    S     +    ++      +L+ GPPG+GKT+LA+++++ +   
Sbjct: 111 LRPRELREYVGQQHILSQESGALYKYVSQGTIPSMILW-GPPGVGKTSLARLLSKTVNAR 169

Query: 82  FRST-------SGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYP 127
            ++        +    A A +L  +  N +          VLF+DEIHR +   +++L P
Sbjct: 170 PQAKITYQLVETSATKANAQELRTVFDNAKKEFRLTKRMTVLFVDEIHRFNKGQQDLLLP 229

Query: 128 AMEDFQLDLM--VGEGPSARSVKINLSR 153
            +E   + L+    E PS +     LSR
Sbjct: 230 YVESGGIVLIGATTENPSFQLNNALLSR 257


>gi|227535327|ref|ZP_03965376.1| crossover junction endodeoxyribonuclease [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
 gi|227187061|gb|EEI67128.1| crossover junction endodeoxyribonuclease [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
          Length = 423

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 3/110 (2%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L+E  GQ +     ++      A    L  ++  GPPG GKT++A  +A      
Sbjct: 1   MRPQNLDEVVGQQDLVGPDRIIRRMVSA--HRLSSMILYGPPGTGKTSIASAIAGSTKYA 58

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           FR  +     K    + A    +    +L +DEIHRL    ++ L P +E
Sbjct: 59  FRILNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPLLE 108


>gi|254560091|ref|YP_003067186.1| DNA-binding ATP-dependent protease La, induced by heat shock and
           other stresses [Methylobacterium extorquens DM4]
 gi|254267369|emb|CAX23204.1| DNA-binding ATP-dependent protease La, induced by heat shock and
           other stresses [Methylobacterium extorquens DM4]
          Length = 803

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 74/162 (45%), Gaps = 32/162 (19%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           + FVGPPG+GKT+L Q +AR +G +F R + G V  +A              G++   + 
Sbjct: 373 LCFVGPPGVGKTSLGQSIARAMGRSFVRVSLGGVHDEAEIRGHRRTYVGAMPGNIIQAVR 432

Query: 102 NLEDRD-VLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152
               RD V+ +DEI ++        S  + E+L P       D  +G       V  +LS
Sbjct: 433 KAGARDCVVMLDEIDKMGRGIQGDPSAAMLEVLDPEQNGTFRDNYLG-------VPFDLS 485

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           R   IA    +  + +PL+DR  + I L  Y  ++   I +R
Sbjct: 486 RIAFIATANMLDTIPSPLRDRMEV-ISLAGYTEDEKHEIARR 526


>gi|254468300|ref|ZP_05081706.1| AAA ATPase, central region [beta proteobacterium KB13]
 gi|207087110|gb|EDZ64393.1| AAA ATPase, central region [beta proteobacterium KB13]
          Length = 429

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 83/199 (41%), Gaps = 31/199 (15%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           +LRP+ +++  GQ     +      A  +    L  ++  GPPG+GKT++A  +A  +  
Sbjct: 11  ILRPKIIDDVIGQDHLLGDDCPIRNAVTSNK--LPSIILWGPPGVGKTSIAYAIANSVNY 68

Query: 81  NFRSTSGPV-----IAKAGDLAALLTNL-EDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
            F S S  +     I +A D A    +  + + +LFIDE+HR +   ++   P +E+   
Sbjct: 69  EFISLSAVLSGVKDIREAVDKANFNKDQNQKKTMLFIDEVHRFNKSQQDAFLPHVEN--- 125

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLL--TNPLQDRFGIPIRLNFYEIEDLKTIV 192
                              FT I ATT        + L  R  + I LN    E LKTI+
Sbjct: 126 -----------------GLFTFIGATTENPSFEVNSALLSRCQVYI-LNSLSNEALKTIL 167

Query: 193 QRGAKLTGLAVTDEAACEI 211
            +   +      DE + E 
Sbjct: 168 NKALSIQENIKLDEPSTEF 186


>gi|158522144|ref|YP_001530014.1| recombination factor protein RarA [Desulfococcus oleovorans Hxd3]
 gi|158510970|gb|ABW67937.1| AAA ATPase central domain protein [Desulfococcus oleovorans Hxd3]
          Length = 459

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 68/145 (46%), Gaps = 12/145 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  LE+  GQ    +     + +A  +      +L+ GPPG GKTTLA+++A   G  
Sbjct: 23  MRPEKLEDLAGQPH-VTGPDSLLRSALEKGTLFSMILW-GPPGCGKTTLARILAGMTGAA 80

Query: 82  FRSTSGPVIAKAGDLAALLT-------NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           +   S  V++   ++  ++          +   +LF+DE+HR +   ++   P +E   +
Sbjct: 81  YVQISA-VLSGVKEIREVVEAARRRRGEFQKDTILFVDEVHRFNKSQQDAFLPHVESGLV 139

Query: 135 DLM--VGEGPSARSVKINLSRFTLI 157
            L+    E PS   +   +SR  LI
Sbjct: 140 TLIGATTENPSFEVIPALMSRCRLI 164


>gi|239631709|ref|ZP_04674740.1| recombination factor protein RarA [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|239526174|gb|EEQ65175.1| recombination factor protein RarA [Lactobacillus paracasei subsp.
           paracasei 8700:2]
          Length = 423

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 3/110 (2%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L+E  GQ +     ++      A    L  ++  GPPG GKT++A  +A      
Sbjct: 1   MRPQNLDEVVGQQDLVGPDRIIRRMVSA--HRLSSMILYGPPGTGKTSIASAIAGSTKYA 58

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           FR  +     K    + A    +    +L +DEIHRL    ++ L P +E
Sbjct: 59  FRILNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPLLE 108


>gi|82751226|ref|YP_416967.1| recombination factor protein RarA [Staphylococcus aureus RF122]
 gi|82656757|emb|CAI81186.1| probable ATPase [Staphylococcus aureus RF122]
          Length = 424

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 64/133 (48%), Gaps = 6/133 (4%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           S +RP+ ++E   Q        +       +   L  ++F GPPG+GKT++A+ ++    
Sbjct: 8   SRMRPKNIDEIISQQHLVGPRGIIRRMVDTKK--LTSMIFYGPPGIGKTSIAKAISGSTQ 65

Query: 80  VNFRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
             FR  +  V     D+  ++    +  + +L +DEIHRL    ++ L P +E+ ++ ++
Sbjct: 66  YKFRQLNA-VTNTKKDMQFVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKI-VL 123

Query: 138 VGEGPSARSVKIN 150
           +G   S     IN
Sbjct: 124 IGATTSNPYHAIN 136


>gi|253732284|ref|ZP_04866449.1| crossover junction endodeoxyribonuclease ATPase [Staphylococcus
           aureus subsp. aureus USA300_TCH959]
 gi|253724073|gb|EES92802.1| crossover junction endodeoxyribonuclease ATPase [Staphylococcus
           aureus subsp. aureus USA300_TCH959]
          Length = 415

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 60/130 (46%), Gaps = 4/130 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ ++E   Q        +       +   L  ++F GPPG+GKT++A+ ++      
Sbjct: 1   MRPKNIDEIISQQHLVGPKGIIRRMVDTKK--LTSMIFYGPPGIGKTSIAKAISGSTQYK 58

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR  +     K    L      +  + +L +DEIHRL    ++ L P +E+ ++ +++G 
Sbjct: 59  FRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKI-VLIGA 117

Query: 141 GPSARSVKIN 150
             S     IN
Sbjct: 118 TTSNPYHAIN 127


>gi|156841917|ref|XP_001644329.1| hypothetical protein Kpol_1066p38 [Vanderwaltozyma polyspora DSM
          70294]
 gi|156114969|gb|EDO16471.1| hypothetical protein Kpol_1066p38 [Vanderwaltozyma polyspora DSM
          70294]
          Length = 336

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 6/63 (9%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81
          RP +L+E  GQ E  + ++ F+E  K     L H+LF GPPG GKT+    +A+E+ G N
Sbjct: 19 RPTSLDEVYGQNEIVNTVRKFVEEGK-----LPHLLFYGPPGTGKTSTIIALAKEIYGKN 73

Query: 82 FRS 84
          + +
Sbjct: 74 YHN 76


>gi|145590269|ref|YP_001152271.1| replication factor C small subunit [Pyrobaculum arsenaticum DSM
          13514]
 gi|158514158|sp|A4WGV2|RFCS1_PYRAR RecName: Full=Replication factor C small subunit 1; Short=RFC
          small subunit 1; AltName: Full=Clamp loader small
          subunit 1
 gi|145282037|gb|ABP49619.1| Replication factor C [Pyrobaculum arsenaticum DSM 13514]
          Length = 329

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 6/65 (9%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81
          RPR+ +E     E  + L+ F+     R   + H+LF GPPG GKTT+A V+AREL G  
Sbjct: 11 RPRSFDEVVDLEEVKARLREFV-----RGGNMPHLLFYGPPGTGKTTMALVLARELYGEY 65

Query: 82 FRSTS 86
          +R  +
Sbjct: 66 WRENT 70


>gi|301066249|ref|YP_003788272.1| helicase subunit of the Holliday junction resolvase-like ATPase
           [Lactobacillus casei str. Zhang]
 gi|300438656|gb|ADK18422.1| Helicase subunit of the Holliday junction resolvase related ATPase
           [Lactobacillus casei str. Zhang]
          Length = 431

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 3/110 (2%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L+E  GQ +     ++      A    L  ++  GPPG GKT++A  +A      
Sbjct: 9   MRPQNLDEVVGQQDLVGPDRIIRRMVSA--HRLSSMILYGPPGTGKTSIASAIAGSTKYA 66

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           FR  +     K    + A    +    +L +DEIHRL    ++ L P +E
Sbjct: 67  FRILNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPLLE 116


>gi|191638187|ref|YP_001987353.1| Chromosome segregation helicase (Putative) [Lactobacillus casei
           BL23]
 gi|190712489|emb|CAQ66495.1| Chromosome segregation helicase (Putative) [Lactobacillus casei
           BL23]
 gi|327382219|gb|AEA53695.1| hypothetical protein LC2W_1361 [Lactobacillus casei LC2W]
 gi|327385416|gb|AEA56890.1| hypothetical protein LCBD_1393 [Lactobacillus casei BD-II]
          Length = 431

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 3/110 (2%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L+E  GQ +     ++      A    L  ++  GPPG GKT++A  +A      
Sbjct: 9   MRPQNLDEVVGQQDLVGPDRIIRRMVSA--HRLSSMILYGPPGTGKTSIASAIAGSTKYA 66

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           FR  +     K    + A    +    +L +DEIHRL    ++ L P +E
Sbjct: 67  FRILNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPLLE 116


>gi|118586592|ref|ZP_01544033.1| ATPase, AAA family [Oenococcus oeni ATCC BAA-1163]
 gi|290890861|ref|ZP_06553927.1| hypothetical protein AWRIB429_1317 [Oenococcus oeni AWRIB429]
 gi|118432971|gb|EAV39696.1| ATPase, AAA family [Oenococcus oeni ATCC BAA-1163]
 gi|290479512|gb|EFD88170.1| hypothetical protein AWRIB429_1317 [Oenococcus oeni AWRIB429]
          Length = 429

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 89/222 (40%), Gaps = 55/222 (24%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ +E+  GQ       K+     +A    L  ++  G PG GKT++A  +A    ++
Sbjct: 10  MRPKKIEDVVGQQHLIGKGKIIWRMVQAHR--LSSMILYGEPGTGKTSIASAIAGSTELS 67

Query: 82  FR----STSGPV----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           FR    +T G      +A+ G ++  +       +L +DEIHRL    ++ L P +E   
Sbjct: 68  FRILNAATDGKKELQEVAEEGKMSGSV-------ILLLDEIHRLDKTKQDFLLPHLES-- 118

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP-LQDRFGIPIRLNFYEIE-----D 187
                              R  LI ATT      NP L     I  R   + +E     D
Sbjct: 119 ------------------GRIVLIGATTE-----NPYLSVTPAIRSRTQIFHVEALSEKD 155

Query: 188 LKTIVQRG--AKLTGLA-----VTDEAACEIAMRSRGTPRIA 222
           +KT + R    K  GL      + D+A   ++  + G  R A
Sbjct: 156 IKTAINRALSDKENGLGNYNIKLDDQAKNHLSTATNGDLRSA 197


>gi|85373214|ref|YP_457276.1| recombination factor protein RarA [Erythrobacter litoralis
           HTCC2594]
 gi|84786297|gb|ABC62479.1| ATPase [Erythrobacter litoralis HTCC2594]
          Length = 440

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 64/127 (50%), Gaps = 10/127 (7%)

Query: 11  NVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           +  +EDA ++  LRPR L E  GQ E  +  K  I    A  +    VL+ GPPG GKT+
Sbjct: 15  DAPREDAPLADRLRPRALGEVIGQ-EHLTGPKGAIGRMVASGKLSSMVLW-GPPGTGKTS 72

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEE 123
            A+++A  +G+ F + S  V +   DL       +       + +LF+DEIHR +   ++
Sbjct: 73  TARLLADAVGMRFVAISA-VFSGVADLKKAFAEADRMAAAGRKTLLFVDEIHRFNRAQQD 131

Query: 124 ILYPAME 130
              P +E
Sbjct: 132 GFLPFVE 138


>gi|70726294|ref|YP_253208.1| recombination factor protein RarA [Staphylococcus haemolyticus
           JCSC1435]
 gi|68447018|dbj|BAE04602.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 422

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 64/133 (48%), Gaps = 6/133 (4%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           S +RP  ++E   Q        +     + +   L  ++F GPPG+GKT++A+ ++    
Sbjct: 8   SRMRPTNIDEIISQQHLVGPRGIIRRMVETKR--LSSMIFYGPPGIGKTSIAKAISGSTD 65

Query: 80  VNFRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
             FR  +  V     D+  ++    +  + +L +DEIHRL    ++ L P +E+ ++ ++
Sbjct: 66  YKFRQLNA-VTNSKKDMQMVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKI-VL 123

Query: 138 VGEGPSARSVKIN 150
           +G   S     IN
Sbjct: 124 IGATTSNPYHAIN 136


>gi|330683925|gb|EGG95693.1| recombination factor protein RarA [Staphylococcus epidermidis
           VCU121]
          Length = 423

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 53/99 (53%), Gaps = 4/99 (4%)

Query: 54  LDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALL--TNLEDRDVLFI 111
           L  ++F GPPG+GKT++A+ +A      FR  +  V     D+  ++    +  + +L +
Sbjct: 40  LSSMIFYGPPGIGKTSIAKAIAGSTQYKFRQLNA-VTNTKKDMQMVVDEAKMSGQVILLL 98

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN 150
           DEIHRL    ++ L P +E+ ++ +++G   S     IN
Sbjct: 99  DEIHRLDKAKQDFLLPHLENGKI-VLIGATTSNPYHAIN 136


>gi|119897658|ref|YP_932871.1| recombination factor protein RarA [Azoarcus sp. BH72]
 gi|119670071|emb|CAL93984.1| conserved hypothetical protein [Azoarcus sp. BH72]
          Length = 445

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 71/273 (26%), Positives = 110/273 (40%), Gaps = 49/273 (17%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP TL+E  GQ       K  +  A A  +    +L+ GPPG+GKTTLA+++A+     
Sbjct: 19  MRPGTLDEVAGQAHLLGPGKP-LRLAFASGKPHSMILW-GPPGVGKTTLARLMAKGFDAE 76

Query: 82  FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F + S  V +   D+   +   +         +LF+DE+HR +   ++   P +E     
Sbjct: 77  FVALSA-VFSGVKDIREAIVQAQAAKARGRHTILFVDEVHRFNKAQQDAFLPYVEQ---- 131

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQR 194
                              T I ATT      NP  +    +  R   Y +E L T   +
Sbjct: 132 ----------------GLVTFIGATTE-----NPSFEVNSALLSRAAVYVLEPLDTEAMQ 170

Query: 195 G--AKLTGLAVTDEAACEIAMRSR------GTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           G   +   LA  D    E A R R      G  R    L+ +++  AE A    +T +  
Sbjct: 171 GLFERARSLACPD-LVFEEAARERMIGFADGDARRLMNLIEQIQVAAETAGVAPVTADFV 229

Query: 247 DAALLR--LAIDKMG---FDQLDLRYLTMIARN 274
           D AL R     DK G   +DQ+   + ++   N
Sbjct: 230 DEALSRDLRRFDKGGEAFYDQISALHKSVRGSN 262


>gi|70606692|ref|YP_255562.1| replication factor C large subunit [Sulfolobus acidocaldarius DSM
          639]
 gi|73914010|sp|Q4JAB1|RFCL_SULAC RecName: Full=Replication factor C large subunit; Short=RFC large
          subunit; AltName: Full=Clamp loader large subunit
 gi|68567340|gb|AAY80269.1| replication factor C [Sulfolobus acidocaldarius DSM 639]
          Length = 437

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 33/55 (60%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
          RP++L+E   Q E    LK +IE+          VL  GPPG+GKTTLA+ +AR+
Sbjct: 10 RPKSLQEVENQDEVKEELKKWIESWLNGEPTAKAVLLYGPPGVGKTTLAEALARD 64


>gi|240276219|gb|EER39731.1| DNA replication ATPase [Ajellomyces capsulatus H143]
          Length = 547

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 112/263 (42%), Gaps = 52/263 (19%)

Query: 22  LRPRTLEEFTGQ--VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +RPR+L++  GQ  V     L+  IE  +     +  ++  G  G GKTT+A+V+A+ +G
Sbjct: 135 MRPRSLDDVYGQELVGPSGVLRGLIEQDR-----VPSMILWGGAGTGKTTIARVIAKMVG 189

Query: 80  VNFR--STSGPVIAKAGDLAALLTN---LEDRD-VLFIDEIHRLSIIVEEILYPAMEDFQ 133
             F   +++   +A+   L +   N   L  R  ++F DEIHR S   +++    +E  Q
Sbjct: 190 SRFVEINSTNSGVAECKKLFSEAKNELSLSGRKTIIFCDEIHRFSKSQQDVFLGPVESGQ 249

Query: 134 LDLM--VGEGPSARSVKINLSR---FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + L+    E PS +     LSR   FTL   T                         ED+
Sbjct: 250 ITLIGATTENPSFKVQNALLSRCRTFTLAKLTD------------------------EDI 285

Query: 189 KTIVQRGAKLTGLA------VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            +I+ R  K+ G        V DE    +A  + G  R +  LL    D   ++  + +T
Sbjct: 286 VSILNRALKVEGPNYSPSPLVDDELIKYLAAFADGDARTSLNLLELAMD---LSRREGMT 342

Query: 243 REIADAALLR-LAIDKMGFDQLD 264
           RE    +L R L  D+ G    D
Sbjct: 343 REDLKKSLTRTLVYDRAGDQHYD 365


>gi|50309079|ref|XP_454545.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49643680|emb|CAG99632.1| KLLA0E13201p [Kluyveromyces lactis]
          Length = 329

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 6/67 (8%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          I   RP TL++  GQ    + ++ F+   +     L H+LF GPPG GKT+    +ARE+
Sbjct: 11 IEKYRPETLDDVYGQQNVVNTVRKFLHEGR-----LPHLLFYGPPGTGKTSTIVALAREI 65

Query: 79 -GVNFRS 84
           G N+R+
Sbjct: 66 YGSNYRN 72


>gi|260906747|ref|ZP_05915069.1| recombination factor protein RarA [Brevibacterium linens BL2]
          Length = 421

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 65/137 (47%), Gaps = 14/137 (10%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEA---LDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP +LE+  GQ     +     +A   R  A   L  ++  GPPG GKTT+A+++A   
Sbjct: 15  LRPESLEDVIGQDHLLGD-----DAPIGRMVAERRLVSMVLWGPPGCGKTTIARLLAERT 69

Query: 79  GVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
            + F S S        + K    AA    +    +LF+DEIHR +   ++   P +ED  
Sbjct: 70  NLVFESVSATFSGVAELRKVFQSAAKRREIGQGTMLFVDEIHRFNRAQQDSFLPYVEDGT 129

Query: 134 LDLMVGEGPSARSVKIN 150
           + ++VG      S ++N
Sbjct: 130 I-VLVGATTENPSFELN 145


>gi|224002178|ref|XP_002290761.1| transitional endoplasmic reticulum [Thalassiosira pseudonana
           CCMP1335]
 gi|220974183|gb|EED92513.1| transitional endoplasmic reticulum [Thalassiosira pseudonana
           CCMP1335]
          Length = 818

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E  VNF S  GP +     G   A + N+ D+       +
Sbjct: 531 VLFYGPPGCGKTLLAKAIANECQVNFISVKGPELLNMWFGQSEANVRNVFDKARQAAPCI 590

Query: 109 LFIDEIHRLS 118
           LF DE+  +S
Sbjct: 591 LFFDELDSIS 600



 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 18/38 (47%), Positives = 22/38 (57%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG 94
           VL  GPPG GKT +A+ +A E G  F   +GP I   G
Sbjct: 250 VLLYGPPGSGKTLIARAIANETGAFFYLINGPEIMSKG 287


>gi|315222482|ref|ZP_07864380.1| recombination factor protein RarA [Streptococcus anginosus F0211]
 gi|315188450|gb|EFU22167.1| recombination factor protein RarA [Streptococcus anginosus F0211]
          Length = 423

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 59/123 (47%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ + +  GQ       K+     +A    L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPKNINQVIGQKHLVGEGKIIRRMVEANR--LSSMILYGPPGIGKTSIASAIAGTTKFA 66

Query: 82  FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +  V +K       + A     L    +L +DEIHRL    ++ L P +E+  L +
Sbjct: 67  FRTFNATVDSKKRLQEIAEEAKFSGGL----MLLLDEIHRLDKTKQDFLLPLLEN-GLII 121

Query: 137 MVG 139
           M+G
Sbjct: 122 MIG 124


>gi|299066065|emb|CBJ37246.1| Replication-associated recombination protein A [Ralstonia
           solanacearum CMR15]
          Length = 449

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 9/115 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP +++E  GQ       K  +  A A  E    +L+ GPPG+GKTTLA+++A      
Sbjct: 20  LRPHSVDEVIGQQHLLGPSKP-LRVAFASGEPHSMILW-GPPGVGKTTLARLMADAFDAE 77

Query: 82  FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130
           F + S  V++   D+   +   E       R ++F+DE+HR +   ++   P +E
Sbjct: 78  FIALSA-VLSGVKDIREAVERAEQFRAHGRRTLVFVDEVHRFNKSQQDAFLPHVE 131


>gi|257126269|ref|YP_003164383.1| recombination factor protein RarA [Leptotrichia buccalis C-1013-b]
 gi|257050208|gb|ACV39392.1| AAA ATPase central domain protein [Leptotrichia buccalis C-1013-b]
          Length = 409

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 82/172 (47%), Gaps = 24/172 (13%)

Query: 23  RPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           RP++L++F GQ   V     L+  IE    R   ++  +F G PG GKTTLA++++ ++ 
Sbjct: 19  RPKSLDDFYGQKRLVGENGILRKIIE----RGNFMN-AIFWGAPGTGKTTLAEIISNKMN 73

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMEDF 132
            ++   +  + A   D+  +     +R        +LF+DEIHR + + ++ L   +E+ 
Sbjct: 74  YHYEYLNA-IKASVADIKEISEKAANRFHMNGQQTLLFLDEIHRFNKLQQDSLLQDLENG 132

Query: 133 QLDLM--VGEGPSARSVKINLSR-----FTLIAATTRVGLLTN-PLQDRFGI 176
            + L+    E P        LSR     F  ++    + +L N   ++ FGI
Sbjct: 133 NIILIGATTENPYYNLNNALLSRCLAFEFKKLSEKNLMEILKNINEKENFGI 184


>gi|87202996|gb|ABD30806.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|320140486|gb|EFW32340.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus MRSA131]
 gi|320144025|gb|EFW35794.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus MRSA177]
          Length = 415

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 60/130 (46%), Gaps = 4/130 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ ++E   Q        +       +   L  ++F GPPG+GKT++A+ ++      
Sbjct: 1   MRPKNIDEIISQQHLVGPRGIIRRMVDTKK--LTSMIFYGPPGIGKTSIAKAISGSTQYK 58

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR  +     K    L      +  + +L +DEIHRL    ++ L P +E+ ++ +++G 
Sbjct: 59  FRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKI-VLIGA 117

Query: 141 GPSARSVKIN 150
             S     IN
Sbjct: 118 TTSNPYHAIN 127


>gi|325089916|gb|EGC43226.1| DNA replication ATPase [Ajellomyces capsulatus H88]
          Length = 547

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 112/263 (42%), Gaps = 52/263 (19%)

Query: 22  LRPRTLEEFTGQ--VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +RPR+L++  GQ  V     L+  IE  +     +  ++  G  G GKTT+A+V+A+ +G
Sbjct: 135 MRPRSLDDVYGQELVGPSGVLRGLIEQDR-----VPSMILWGGAGTGKTTIARVIAKMVG 189

Query: 80  VNFR--STSGPVIAKAGDLAALLTN---LEDRD-VLFIDEIHRLSIIVEEILYPAMEDFQ 133
             F   +++   +A+   L +   N   L  R  ++F DEIHR S   +++    +E  Q
Sbjct: 190 SRFVEINSTNSGVAECKKLFSEAKNELSLSGRKTIIFCDEIHRFSKSQQDVFLGPVESGQ 249

Query: 134 LDLM--VGEGPSARSVKINLSR---FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + L+    E PS +     LSR   FTL   T                         ED+
Sbjct: 250 ITLIGATTENPSFKVQNALLSRCRTFTLAKLTD------------------------EDI 285

Query: 189 KTIVQRGAKLTGLA------VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            +I+ R  K+ G        V DE    +A  + G  R +  LL    D   ++  + +T
Sbjct: 286 VSILNRALKVEGPNYSPSPLVDDELIKYLAAFADGDARTSLNLLELAMD---LSRREGMT 342

Query: 243 REIADAALLR-LAIDKMGFDQLD 264
           RE    +L R L  D+ G    D
Sbjct: 343 REDLKKSLTRTLVYDRAGDQHYD 365


>gi|298694907|gb|ADI98129.1| probable ATPase [Staphylococcus aureus subsp. aureus ED133]
 gi|323440819|gb|EGA98528.1| recombination factor protein RarA [Staphylococcus aureus O11]
 gi|323442832|gb|EGB00457.1| recombination factor protein RarA [Staphylococcus aureus O46]
          Length = 415

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 60/130 (46%), Gaps = 4/130 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ ++E   Q        +       +   L  ++F GPPG+GKT++A+ ++      
Sbjct: 1   MRPKNIDEIISQQHLVGPRGIIRRMVDTKK--LTSMIFYGPPGIGKTSIAKAISGSTQYK 58

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR  +     K    L      +  + +L +DEIHRL    ++ L P +E+ ++ +++G 
Sbjct: 59  FRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKI-VLIGA 117

Query: 141 GPSARSVKIN 150
             S     IN
Sbjct: 118 TTSNPYHAIN 127


>gi|307596342|ref|YP_003902659.1| Replication factor C [Vulcanisaeta distributa DSM 14429]
 gi|307551543|gb|ADN51608.1| Replication factor C [Vulcanisaeta distributa DSM 14429]
          Length = 342

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 102/243 (41%), Gaps = 48/243 (19%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +   RP  +++   Q E    +K F++        + H+LF GPPG GKTT+A  +AREL
Sbjct: 9   VEKYRPSRIDDIIDQEEVKERIKQFLKTGN-----MPHMLFYGPPGTGKTTMALAIAREL 63

Query: 79  -GVNFRSTSGPVIAKAGDLAALLTNLEDR---------------DVLFIDEIHRLSIIVE 122
            G  +R     V+         +T + +R                ++ +DE   ++   +
Sbjct: 64  YGDAWREN---VLELNASDERGITTIRERVKEFARTAPMGKAPYKLVILDEADNMTSDAQ 120

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           + L   ME +                 N++RF LIA    V  + +P+Q R  +  R + 
Sbjct: 121 QALRRMMEMYA----------------NVTRFILIA--NYVSRIIDPIQSRCAM-FRFSP 161

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
              + +   ++  A   G+ VT+EA   I   S+G  R A   L+     A  A AK IT
Sbjct: 162 LPKDAVLGRLREIASKEGVKVTNEALEAIWDVSQGDMRKAINTLQ-----AAAATAKEIT 216

Query: 243 REI 245
            E+
Sbjct: 217 PEV 219


>gi|302773279|ref|XP_002970057.1| hypothetical protein SELMODRAFT_231444 [Selaginella moellendorffii]
 gi|300162568|gb|EFJ29181.1| hypothetical protein SELMODRAFT_231444 [Selaginella moellendorffii]
          Length = 411

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 72/159 (45%), Gaps = 16/159 (10%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP ++    GQ         LK  +E      ++L  V+F GPPG GKTTLA+ +A  +
Sbjct: 1   MRPTSVNAILGQDHLLGPRGILKSLLEG-----DSLASVIFWGPPGTGKTTLARAIASTV 55

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
              F + S  V +   ++  +L   +       R +LF+DE+HR +   ++   P +E  
Sbjct: 56  SYRFVALSA-VTSGVKEVREVLEEAKKAKKYGQRTLLFLDEVHRFNKAQQDAFLPYVEAG 114

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
            + + VG      S +IN +  +     T   LL   L+
Sbjct: 115 HV-VFVGATTENPSFEINAALLSRCKVLTMNKLLPEHLE 152


>gi|56964400|ref|YP_176131.1| ATP-dependent Lon protease [Bacillus clausii KSM-K16]
 gi|56910643|dbj|BAD65170.1| ATP-dependent Lon protease [Bacillus clausii KSM-K16]
          Length = 555

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 92/239 (38%), Gaps = 53/239 (22%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV----ARE 77
           +RP+ L E  GQ +    L++ +     +     HV+  GPPG+GKT  A++V     R+
Sbjct: 63  VRPKHLSEVVGQEDGLKTLRMALCGPNPQ-----HVIIYGPPGVGKTAAARLVLDEAKRQ 117

Query: 78  LGVNFRSTSG--------------------------PVIAKAGDLAAL--------LTNL 103
               FRST+                           P+   AG +               
Sbjct: 118 ADSPFRSTAAFVELDGATSRFDERGIADPLIGSVHDPIYQGAGSMGQAGIPQPKPGAVTK 177

Query: 104 EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARS---------VKINL-SR 153
               +LFIDEI  L  I +  L   +ED ++ L      S             K  L + 
Sbjct: 178 AHGGILFIDEIGELHTIQQNKLLKVLEDRKVFLESAYYSSENEQIPSHIHDIFKRGLPAD 237

Query: 154 FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIA 212
           F L+AATTR      P      + +     + +++  I +R A   G+A+T EAA ++A
Sbjct: 238 FRLVAATTRQPEEMPPAIRSRCLEVFFRALDPDEIVEIAKRAADKAGMALTSEAAKKVA 296


>gi|221115745|ref|XP_002160777.1| PREDICTED: similar to Werner helicase interacting protein 1 [Hydra
           magnipapillata]
          Length = 527

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 66/275 (24%), Positives = 109/275 (39%), Gaps = 58/275 (21%)

Query: 22  LRPRTLEEFTGQVE-ACSNL--KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR-- 76
           +RP   + F GQ      NL  ++F+      +  +  ++  GPPG GKT+ A +++R  
Sbjct: 115 MRPNNFDNFYGQNSFGAKNLLKELFV------SNKIPSLILWGPPGCGKTSFAHIISRRC 168

Query: 77  -ELGVNFR----STSGPVIAKAGDLAALLTNLED----RDVLFIDEIHRLSIIVEEILYP 127
            E    +R    S +   I    D   +  N +     + VLFIDEIHR + + ++   P
Sbjct: 169 KESDSKYRFVTLSATMAGINDVKDEIKVAKNEKKLTSRKTVLFIDEIHRFNKMQQDTFLP 228

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTR--VGLLTNPLQDRFGIPIRLNFYEI 185
            +ED                        LI ATT      + N L  R  + +  N  E 
Sbjct: 229 YVED--------------------GTIVLIGATTENPSFYINNALISRCHV-VVFNSLET 267

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACE--------IAMRSRGTPRIA----GRLLRRVRDFA 233
           E +  I+Q   +L      + A C         +A  + G  R A      +L+  ++  
Sbjct: 268 EVILKILQNAIELLNETDQEVAKCRFEEGALNLVAQYANGDARCALNKLDMILQAKKESI 327

Query: 234 EVAHAKT-ITREIADAALLRLAI--DKMGFDQLDL 265
            V+ A + I+ E+    L R  +  DK G +  +L
Sbjct: 328 HVSQANSQISCELIREELQRCCVNYDKAGDEHYNL 362


>gi|145592047|ref|YP_001154049.1| replication factor C small subunit [Pyrobaculum arsenaticum DSM
          13514]
 gi|158514167|sp|A4WLY0|RFCS2_PYRAR RecName: Full=Replication factor C small subunit 2; Short=RFC
          small subunit 2; AltName: Full=Clamp loader small
          subunit 2
 gi|145283815|gb|ABP51397.1| replication factor C small subunit [Pyrobaculum arsenaticum DSM
          13514]
          Length = 322

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RPR+ +E     E  + L+ F+     R   + H+LF GPPG GKTT+A V+AREL
Sbjct: 11 RPRSFDEVVDLEEVKARLREFV-----RGGNMPHLLFYGPPGTGKTTMALVLAREL 61


>gi|52841991|ref|YP_095790.1| recombination factor protein RarA [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|148359308|ref|YP_001250515.1| chromosome architecture ATPase [Legionella pneumophila str. Corby]
 gi|296107355|ref|YP_003619055.1| ATPase associated with chromosome architecture [Legionella
           pneumophila 2300/99 Alcoy]
 gi|52629102|gb|AAU27843.1| ATPase associated with chromosome architecture [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|148281081|gb|ABQ55169.1| ATPase associated with chromosome architecture [Legionella
           pneumophila str. Corby]
 gi|295649256|gb|ADG25103.1| ATPase associated with chromosome architecture [Legionella
           pneumophila 2300/99 Alcoy]
 gi|307610463|emb|CBX00034.1| hypothetical protein LPW_17901 [Legionella pneumophila 130b]
          Length = 434

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 59/118 (50%), Gaps = 15/118 (12%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+ ++E  GQ         L++    +K     L  ++  GPPG+GKTT+A++ A+  
Sbjct: 16  LRPQHIDEVIGQSHLLGEGKPLRLCFMGSK-----LHSMILWGPPGVGKTTIARLTAQAF 70

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130
              + + S  V +   D+ A +   ++      + +LFIDEIHR +   ++ L P  E
Sbjct: 71  DCEWIALSA-VFSGVKDIRAAVEKAQEYLIHDKQTILFIDEIHRFNKAQQDALLPYTE 127


>gi|225559886|gb|EEH08168.1| DNA replication ATPase [Ajellomyces capsulatus G186AR]
 gi|225559936|gb|EEH08218.1| DNA replication ATPase [Ajellomyces capsulatus G186AR]
          Length = 547

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 112/263 (42%), Gaps = 52/263 (19%)

Query: 22  LRPRTLEEFTGQ--VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +RPR+L++  GQ  V     L+  IE  +     +  ++  G  G GKTT+A+V+A+ +G
Sbjct: 135 MRPRSLDDVYGQELVGPSGVLRGLIEQDR-----VPSMILWGGAGTGKTTIARVIAKMVG 189

Query: 80  VNFR--STSGPVIAKAGDLAALLTN---LEDRD-VLFIDEIHRLSIIVEEILYPAMEDFQ 133
             F   +++   +A+   L +   N   L  R  ++F DEIHR S   +++    +E  Q
Sbjct: 190 SRFVEINSTNSGVAECKKLFSEAKNELSLSGRKTIIFCDEIHRFSKSQQDVFLGPVESGQ 249

Query: 134 LDLM--VGEGPSARSVKINLSR---FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + L+    E PS +     LSR   FTL   T                         ED+
Sbjct: 250 ITLIGATTENPSFKVQNALLSRCRTFTLAKLTD------------------------EDI 285

Query: 189 KTIVQRGAKLTGLA------VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            +I+ R  K+ G        V DE    +A  + G  R +  LL    D   ++  + +T
Sbjct: 286 VSILNRALKVEGPNYSPSPLVDDELIKYLAAFADGDARTSLNLLELAMD---LSRREGMT 342

Query: 243 REIADAALLR-LAIDKMGFDQLD 264
           RE    +L R L  D+ G    D
Sbjct: 343 REDLKKSLTRTLVYDRAGDQHYD 365


>gi|119500324|ref|XP_001266919.1| AAA family ATPase, putative [Neosartorya fischeri NRRL 181]
 gi|119415084|gb|EAW25022.1| AAA family ATPase, putative [Neosartorya fischeri NRRL 181]
          Length = 539

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 70/148 (47%), Gaps = 18/148 (12%)

Query: 22  LRPRTLEEFTGQVEACSN--LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +RPRTL+E  GQ     N  L+  IE  +  +     ++  G  G GKTT+A+V+A  +G
Sbjct: 126 MRPRTLDEVCGQELVGPNGVLRGLIEQDRVPS-----MILWGHAGTGKTTIARVIASMVG 180

Query: 80  VNF---RSTSGPVIAKAGDLAALLTNL---EDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             F    STS  V       A   + L     + ++F DEIHR S   +++    +E  Q
Sbjct: 181 SRFVEINSTSTGVAECKKIFAEARSELGLTGRKTIVFCDEIHRFSKSQQDVFLGPVESGQ 240

Query: 134 LDLM--VGEGPSARSVKINLSR---FTL 156
           + L+    E PS +     LSR   FTL
Sbjct: 241 ITLIGATTENPSFKVQNALLSRCRTFTL 268


>gi|30249052|ref|NP_841122.1| recombination factor protein RarA [Nitrosomonas europaea ATCC
           19718]
 gi|30138669|emb|CAD84964.1| Uncharacterized ATPase related to the helicase subunit of the
           Holliday junction resolvase [Nitrosomonas europaea ATCC
           19718]
          Length = 439

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 71/149 (47%), Gaps = 18/149 (12%)

Query: 22  LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPRTL++  GQ         L++  E+ K  +     ++  GPPG GKTTLA+++A   
Sbjct: 19  LRPRTLDDVVGQSHLLGPGKPLRLAFESGKPHS-----MILWGPPGSGKTTLARLMAHAF 73

Query: 79  GVNFRSTSGPV-----IAKAGDLAALLTNLEDR-DVLFIDEIHRLSIIVEEILYPAMEDF 132
              F + S  +     I +A + A +      R  +LF+DE+HR +   ++   P +E  
Sbjct: 74  DAEFIAISAVLSGVKDIREAIERAQITLQRTGRATLLFVDEVHRFNKAQQDAFLPHVEQ- 132

Query: 133 QLDLMVGEGPSARSVKIN---LSRFTLIA 158
            L   +G      S ++N   LSR  + A
Sbjct: 133 GLITFIGATTENPSFEVNGALLSRAQVYA 161


>gi|145299386|ref|YP_001142227.1| recombination factor protein RarA [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142852158|gb|ABO90479.1| ATPase, AAA family [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 447

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 65/140 (46%), Gaps = 11/140 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L+++ GQ       K   +A    A     ++  GPPG GKTTLA+++A      
Sbjct: 21  MRPQDLDQYIGQQHILGPDKPLRKAI--LAGHCHSMILWGPPGTGKTTLAELMAHYCQAE 78

Query: 82  FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
               S  V +   ++ A +   ++      R +LF+DE+HR +   +++  P +ED  + 
Sbjct: 79  VERLSA-VTSGIKEIRAAIDKAKENSWRGVRTILFVDEVHRFNKSQQDVFLPHIEDGTIT 137

Query: 136 LM--VGEGPSARSVKINLSR 153
            +    E PS       LSR
Sbjct: 138 FIGATTENPSFELNNALLSR 157


>gi|17547057|ref|NP_520459.1| recombination factor protein RarA [Ralstonia solanacearum GMI1000]
 gi|17429358|emb|CAD16045.1| putative atpase related to the helicase subunit of the holliday
           junction resolvase protein [Ralstonia solanacearum
           GMI1000]
          Length = 449

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 9/115 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP +++E  GQ       K  +  A A  E    +L+ GPPG+GKTTLA+++A      
Sbjct: 20  LRPHSVDEVIGQQHLLGPSKP-LRVAFASGEPHSMILW-GPPGVGKTTLARLMADAFDAE 77

Query: 82  FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130
           F + S  V++   D+   +   E       R ++F+DE+HR +   ++   P +E
Sbjct: 78  FIALSA-VLSGVKDIRDAVERAEQFRAHGRRTLVFVDEVHRFNKSQQDAFLPHVE 131


>gi|310658800|ref|YP_003936521.1| helicase associated protein [Clostridium sticklandii DSM 519]
 gi|308825578|emb|CBH21616.1| putative helicase associated protein (ATPase, AAA family)
           [Clostridium sticklandii]
          Length = 418

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 66/140 (47%), Gaps = 10/140 (7%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           ++RP+ ++E  GQ        V   A +     + +++F GPPG+GKT++A ++A     
Sbjct: 8   IVRPKKIDEIVGQEHLTGTDGVLYRAIENNI--IPNMIFYGPPGVGKTSVANIIANSCNK 65

Query: 81  NFRSTSGPVIAKAGDLAALLTN-----LEDRDVLFIDEIHRLSIIVEEILYPAME--DFQ 133
           +    +     K  ++  +L +     L+ +++++IDEI   +   ++IL   +E  D  
Sbjct: 66  SIHMLNA-TYTKTEEVKEILKDSKLQTLDSKEIIYIDEIQNFNKKQQQILLDYIEKGDIV 124

Query: 134 LDLMVGEGPSARSVKINLSR 153
           L     E P     K  LSR
Sbjct: 125 LIASTTENPYHYVYKALLSR 144


>gi|260888719|ref|ZP_05899982.1| ATP-dependent protease, Lon family [Selenomonas sputigena ATCC
           35185]
 gi|330839879|ref|YP_004414459.1| anti-sigma H sporulation factor, LonB [Selenomonas sputigena ATCC
           35185]
 gi|260861472|gb|EEX75972.1| ATP-dependent protease, Lon family [Selenomonas sputigena ATCC
           35185]
 gi|329747643|gb|AEC01000.1| anti-sigma H sporulation factor, LonB [Selenomonas sputigena ATCC
           35185]
          Length = 684

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 5/56 (8%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           + LLRP+TLEE  GQ  A   L     A+K  +    H+L  GPPG+GKTT A++V
Sbjct: 172 MELLRPKTLEEVVGQERAVKAL-----ASKLASPYPQHLLLYGPPGVGKTTAARIV 222


>gi|84685387|ref|ZP_01013285.1| ATPase, AAA family protein [Maritimibacter alkaliphilus HTCC2654]
 gi|84666544|gb|EAQ13016.1| ATPase, AAA family protein [Rhodobacterales bacterium HTCC2654]
          Length = 436

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 73/149 (48%), Gaps = 21/149 (14%)

Query: 22  LRPRTLEEFTGQVEAC----SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           LRP  L++  GQ EA       L V + +      +L  ++  GPPG+GKTT+A+++A  
Sbjct: 24  LRPAALDQVIGQ-EAVLGPEGPLGVMLASG-----SLGSLILWGPPGVGKTTIARLLADV 77

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMED 131
             ++F   S  +     DL  +    + R       +LF+DEIHR +   ++   P MED
Sbjct: 78  TDLHFIQISA-IFTGVTDLRKVFEAAKMRRQNGKGTLLFVDEIHRFNKAQQDGFLPHMED 136

Query: 132 FQLDLMVGEGPSARSVKIN---LSRFTLI 157
             + L+VG      S ++N   LSR  +I
Sbjct: 137 GTI-LLVGATTENPSFELNAAVLSRAQVI 164


>gi|47458682|gb|AAT28003.1| ATPase [Mycoplasma mobile 163K]
          Length = 372

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 66/132 (50%), Gaps = 14/132 (10%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           +F G  G+GKTT A V+A+E   ++     P I    +L   L  L    +L IDE+HRL
Sbjct: 5   IFYGESGIGKTTAATVIAKEKQESY-DVFNPTIHSKKEL---LEKLAINKILIIDELHRL 60

Query: 118 SIIVEEILYPAMEDFQLDLMVGEG--------PSARSVKINLSRFTLIAATTRVGLLTNP 169
           +   +EIL   +ED ++ L             PS RS ++ + RF  ++ T     L N 
Sbjct: 61  NKDKQEILLSYLEDDKIILYATTTENPYFKIIPSLRS-RLKILRFNKLSETEIFQGLKNI 119

Query: 170 LQDRFGIPIRLN 181
           ++ ++ + I++N
Sbjct: 120 IE-KYKLKIKIN 130


>gi|182418907|ref|ZP_02950164.1| ATPase, AAA family [Clostridium butyricum 5521]
 gi|237668598|ref|ZP_04528582.1| AAA ATPase, central domain protein [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|182377190|gb|EDT74758.1| ATPase, AAA family [Clostridium butyricum 5521]
 gi|237656946|gb|EEP54502.1| AAA ATPase, central domain protein [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 103

 Score = 48.5 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 8/99 (8%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           L+RP +L++F GQ    S  K      K++   + + +F GPPG GKTTLA ++A  +  
Sbjct: 7   LMRPSSLDDFVGQKHIMSQGKPLYNLIKSKN--ICNCIFYGPPGTGKTTLANIMANYVDK 64

Query: 81  NFRSTSGPVIAKAGDLAALLTNLEDR-----DVLFIDEI 114
            F   +    A   D+  +  NL+        VL+IDE+
Sbjct: 65  KFYKLNA-TTASVKDIQDITNNLDSLLSYSGVVLYIDEL 102


>gi|261403496|ref|YP_003247720.1| AAA ATPase central domain protein [Methanocaldococcus vulcanius
          M7]
 gi|261370489|gb|ACX73238.1| AAA ATPase central domain protein [Methanocaldococcus vulcanius
          M7]
          Length = 509

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          +   RPR+L++  G  +    LK +IE+   + E    +L VGPPG GKTTLA  +A + 
Sbjct: 5  VEKYRPRSLKDVAGHEKVKEKLKTWIESY-LKGENPKPILLVGPPGCGKTTLAYALANDY 63

Query: 79 G 79
          G
Sbjct: 64 G 64


>gi|269859412|ref|XP_002649431.1| ATPase of the AAA+ class [Enterocytozoon bieneusi H348]
 gi|220067194|gb|EED44661.1| ATPase of the AAA+ class [Enterocytozoon bieneusi H348]
          Length = 778

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 83/171 (48%), Gaps = 14/171 (8%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDRD------V 108
           VL  GPPG GKT LA+ VA E   NF S  GP +++K  GD  + +  L D+       V
Sbjct: 522 VLLYGPPGCGKTLLAKAVATECKANFISIKGPELLSKWVGDSESNVRELFDKARGSAPCV 581

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           LF DEI  +    +  ++ + +    D M+ +  +            ++ AT R GLL +
Sbjct: 582 LFFDEIDSVG---KSRMHASNDGGTTDRMLNQILTEMDGMNQKKNVFVMGATNRPGLLDS 638

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQ-RGAKLTGLAVTDEAACE-IAMRSRG 217
            L  R G   +L +  + DLK+ ++    KL+   ++ + + E IA R+ G
Sbjct: 639 ALM-RPGRLDQLVYIPLPDLKSRIKILETKLSKTPLSKDVSIENIAKRTEG 688



 Score = 37.7 bits (86), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALL------TNLEDRDV 108
           +L  GPPG GKT +A+ +A E+G      +GP I    +G+  + L       N +   +
Sbjct: 249 ILLHGPPGTGKTQIARAIANEIGAYLLIINGPEIMSKMSGESESNLRKAFEEANKKQPSI 308

Query: 109 LFIDEIHRLS 118
           +F+DEI  ++
Sbjct: 309 IFMDEIDSIA 318


>gi|223044087|ref|ZP_03614126.1| ATPase, AAA family [Staphylococcus capitis SK14]
 gi|222442481|gb|EEE48587.1| ATPase, AAA family [Staphylococcus capitis SK14]
          Length = 425

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 68/142 (47%), Gaps = 7/142 (4%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           NVS E    S +RP  ++E   Q        +     + +   L  ++F GPPG+GKT++
Sbjct: 3   NVSTEPL-ASRMRPMNIDEIISQQHLVGPKGIIRRMVETKR--LSSMIFYGPPGIGKTSI 59

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           A+ ++      FR  +  V     D+  ++    +  + +L +DEIHRL    ++ L P 
Sbjct: 60  AKAISGSTQFKFRQLNA-VTNTKKDMQMVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPH 118

Query: 129 MEDFQLDLMVGEGPSARSVKIN 150
           +E+ ++ +++G   S     IN
Sbjct: 119 LENGKI-VLIGATTSNPYHAIN 139


>gi|91789641|ref|YP_550593.1| recombination factor protein RarA [Polaromonas sp. JS666]
 gi|91698866|gb|ABE45695.1| Recombination protein MgsA [Polaromonas sp. JS666]
          Length = 427

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 67/143 (46%), Gaps = 16/143 (11%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP++L E  GQ         L++  E+ +  +      +  GPPG+GKTTLA+++A   
Sbjct: 9   LRPKSLGEVIGQQHLLGEGMPLRIAFESGQPHS-----CILWGPPGVGKTTLARLMASSF 63

Query: 79  GVNFRSTSGPV-----IAKAGDLAALLTNLED-RDVLFIDEIHRLSIIVEEILYPAMED- 131
             +F + S  +     I +A + A++       R ++F+DE+HR +   ++   P +E  
Sbjct: 64  DAHFITISAVLGGVKDIREAVEQASIWQGQGGRRTIVFVDEVHRFNKSQQDAFLPHVESG 123

Query: 132 -FQLDLMVGEGPSARSVKINLSR 153
            F       E PS       LSR
Sbjct: 124 LFTFIGATTENPSFEVNSALLSR 146


>gi|260220658|emb|CBA28419.1| Replication-associated recombination protein A [Curvibacter
           putative symbiont of Hydra magnipapillata]
          Length = 431

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 67/148 (45%), Gaps = 23/148 (15%)

Query: 21  LLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           LLRP+TL E  GQ         L++  E+ +  +      +  GPPG+GKTT+A+++A  
Sbjct: 14  LLRPKTLGEVIGQQHLLGEGMALRLAFESGQPHS-----CILWGPPGVGKTTIARLMADA 68

Query: 78  LGVNFRSTSGPV-----IAKAGDLAALLTNLED-----RDVLFIDEIHRLSIIVEEILYP 127
               F + S  +     I +A D A    N  D     R ++F+DE+HR +   ++   P
Sbjct: 69  FDAQFITISAVLGGIKEIREAVDQA---LNARDGLEQRRTIIFVDEVHRFNKSQQDAFLP 125

Query: 128 AMED--FQLDLMVGEGPSARSVKINLSR 153
            +E   F       E PS       LSR
Sbjct: 126 HVESGLFTFIGATTENPSFEVNSALLSR 153


>gi|94264493|ref|ZP_01288280.1| Peptidase S16, ATP-dependent protease La [delta proteobacterium
           MLMS-1]
 gi|93455052|gb|EAT05279.1| Peptidase S16, ATP-dependent protease La [delta proteobacterium
           MLMS-1]
          Length = 809

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 125/289 (43%), Gaps = 68/289 (23%)

Query: 46  AAKARAEALDH--VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------- 93
           A KA+ + L    +  VGPPG+GKT++ + VAR +  NF R + G V  +A         
Sbjct: 339 AVKAQVDKLKGPILCLVGPPGVGKTSICKSVARAMDRNFVRLSLGGVRDEAEIRGHRRTY 398

Query: 94  -GDL-AALLTNLED----RDVLFIDEIHRLSI--------IVEEILYP----AMEDFQLD 135
            G +   +L +++       VL +DE+ ++S+         + E+L P    +  D  LD
Sbjct: 399 IGAMPGKILRSMQQAKVVNPVLCLDEVDKMSMDFRGDPSAALLEVLDPEQNHSFSDHYLD 458

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ-- 193
           L           + +LS    I     +  +  PLQDR  I I++N Y  ED   I Q  
Sbjct: 459 L-----------EYDLSGVFFITTANSLAGIPAPLQDRMEI-IQINGYTEEDKVNIAQGF 506

Query: 194 ---RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
              R  +  G A  D    + A+R          L+RR   +   A  + + R IA +  
Sbjct: 507 LAPRQLEANGFAAGDILFTDPALRE---------LIRR---YTREAGVRNLERAIA-SIC 553

Query: 251 LRLAIDKMGFDQLDLRY-LT--MIARNFGGGPVGIETISAGLSEPRDAI 296
            +LA  ++   Q D RY LT   +AR+      G+     GL+E +D +
Sbjct: 554 RKLARHRLKKQQRDKRYRLTPAAVARHL-----GVAKYRYGLAEEQDRV 597


>gi|121606099|ref|YP_983428.1| recombination factor protein RarA [Polaromonas naphthalenivorans
           CJ2]
 gi|120595068|gb|ABM38507.1| Recombination protein MgsA [Polaromonas naphthalenivorans CJ2]
          Length = 432

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 102/247 (41%), Gaps = 45/247 (18%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+ L E  GQ         L++  E+ +  +      +  GPPG+GKTT+A+++A   
Sbjct: 14  LRPKNLGEVIGQQHLLGEGLPLRIAFESGEPHS-----CILWGPPGVGKTTIARLMASSF 68

Query: 79  GVNFRSTSGPV-----IAKAGDLAALLTNLED-RDVLFIDEIHRLSIIVEEILYPAMED- 131
             +F + S  +     I +A + A +       R ++F+DE+HR +   ++   P +E  
Sbjct: 69  DAHFITISAVLGGVKDIREAVEQATIWQGQGGRRTIVFVDEVHRFNKSQQDAFLPHVESG 128

Query: 132 -FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
            F       E PS       LSR  +         +  PL +             +DLK 
Sbjct: 129 LFTFIGATTENPSFEVNSALLSRAVV--------YVLQPLTE-------------DDLKQ 167

Query: 191 IVQRGAKLTGLAVTDEAACEIAMR----SRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           I+ R      L   +  A E   R    + G  R   RLL  +   +  A A+ IT  + 
Sbjct: 168 IIARVLSERALPAIETIAVEAVDRLVAYADGDAR---RLLNTLESLSVAARAEKIT-GVT 223

Query: 247 DAALLRL 253
           DA LL++
Sbjct: 224 DAWLLKV 230


>gi|73662441|ref|YP_301222.1| recombination factor protein RarA [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
 gi|72494956|dbj|BAE18277.1| conserved hypothetical protein [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 427

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 67/136 (49%), Gaps = 12/136 (8%)

Query: 20  SLLRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           S +RP  ++E   Q   V     ++  +E  +     L  ++F GPPG+GKT++A+ ++ 
Sbjct: 8   SRMRPNNIDEIISQEHLVGPKGIIRRMVETKR-----LSSMIFYGPPGIGKTSIAKAISG 62

Query: 77  ELGVNFRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
                FR  +  V     D+  ++    +  + +L +DEIHRL    ++ L P +E+ ++
Sbjct: 63  STQFKFRQLNA-VTNTKKDMQLIVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKI 121

Query: 135 DLMVGEGPSARSVKIN 150
            +++G   S     IN
Sbjct: 122 -VLIGATTSNPYHAIN 136


>gi|307130789|ref|YP_003882805.1| recombination protein [Dickeya dadantii 3937]
 gi|306528318|gb|ADM98248.1| recombination protein [Dickeya dadantii 3937]
          Length = 447

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 61/129 (47%), Gaps = 9/129 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  L ++ GQ       K    A +A    L  ++  GPPG GKTTLA+++ R    +
Sbjct: 20  MRPAKLAQYIGQQHLLGPGKPLPRAIEA--GQLHSMILWGPPGTGKTTLAELIGRYGQAD 77

Query: 82  FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
                  TSG   I +A + A    +   R +LF+DE+HR +   ++   P +ED  +  
Sbjct: 78  VERISAVTSGIKEIREAIERARQNRDAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 137

Query: 137 M--VGEGPS 143
           +    E PS
Sbjct: 138 IGATTENPS 146


>gi|255554761|ref|XP_002518418.1| 26S protease regulatory subunit, putative [Ricinus communis]
 gi|223542263|gb|EEF43805.1| 26S protease regulatory subunit, putative [Ricinus communis]
          Length = 587

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 89/200 (44%), Gaps = 21/200 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA---------GDLAALLTNLEDRD 107
           VLF GPPG GKT+ A+V+A + GV        V+            G + AL   L +  
Sbjct: 350 VLFEGPPGTGKTSCARVIATQAGVPLLYVPLEVVMSKYYGESEKLLGKVFALANELPNGA 409

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           ++F+DE+   ++  +  ++ A     L +++ +       K    +  +IAAT R   L 
Sbjct: 410 IIFLDEVDSFAVARDNEMHEATRRI-LSVLLRQIDGFEQDK----KVVVIAATNRKQDLD 464

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             L  RF   I     + ++ + IV + AK    +  +E A       + T +++GR ++
Sbjct: 465 PALISRFDSMITFGLPDEQNRQEIVAQYAKHLKRSDIEELA-------KVTDQMSGRDIK 517

Query: 228 RVRDFAEVAHAKTITREIAD 247
            V   AE + A  I R  AD
Sbjct: 518 DVCQQAERSWASKIIRGKAD 537


>gi|301060534|ref|ZP_07201374.1| endopeptidase La [delta proteobacterium NaphS2]
 gi|300445377|gb|EFK09302.1| endopeptidase La [delta proteobacterium NaphS2]
          Length = 819

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 97/223 (43%), Gaps = 57/223 (25%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           +  VGPPG+GKT+LA+ VAR  G N+ R + G V  +A              G +   L 
Sbjct: 362 LCLVGPPGVGKTSLAKSVARATGRNYVRLSLGGVRDEAEIRGHRRTYIGALPGKIIQFLK 421

Query: 102 NLEDRDVLF-IDEIHRLSI--------IVEEILYP----AMEDFQLDLMVGEGPSARSVK 148
             +  + +F +DE+ ++S          + E+L P    A  D  LDL            
Sbjct: 422 KAKTSNPVFCLDEVDKMSTDFRGDPSAALLEVLDPEQNVAFNDHYLDL-----------D 470

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY-EIEDL----KTIVQRGAKLTGLAV 203
            +LS    I     +  +  PLQDR  I IRL  Y EIE L    + +V++  +L GL++
Sbjct: 471 YDLSDIFFITTANNLHNIPGPLQDRMEI-IRLPGYTEIEKLNIAKQFLVKKQIELNGLSL 529

Query: 204 TDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
            + A  + A            +L  +R +   A  + + REI+
Sbjct: 530 ENVAFTDKA------------ILTIIRTYTSEAGVRNLEREIS 560


>gi|240104119|ref|YP_002960428.1| Replication factor C, small subunit (rfcS) [Thermococcus
          gammatolerans EJ3]
 gi|239911673|gb|ACS34564.1| Replication factor C, small subunit (rfcS) [Thermococcus
          gammatolerans EJ3]
          Length = 333

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 6/68 (8%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          +   RP+ L++  GQ      LK +     A+  ++ H+LF GPPG GKT+ A  +AREL
Sbjct: 19 VEKYRPQRLDDIVGQEHIVKRLKHY-----AKTGSMPHLLFAGPPGTGKTSAALALAREL 73

Query: 79 -GVNFRST 85
           G N+R  
Sbjct: 74 FGENWRHN 81


>gi|329114603|ref|ZP_08243362.1| Replication-associated recombination protein A [Acetobacter pomorum
           DM001]
 gi|326696083|gb|EGE47765.1| Replication-associated recombination protein A [Acetobacter pomorum
           DM001]
          Length = 453

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 70/148 (47%), Gaps = 19/148 (12%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARA---EALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+ LE+  GQ           E A  R     +L  ++  G PG+GKTT+A+++A+  
Sbjct: 43  LRPQRLEDVVGQAHLLGP-----EGALTRMLERGSLASLILWGGPGVGKTTIARLLAQAA 97

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDF 132
           G+ F   S  V +   DL     N   +       +LF+DEIHR +   ++   P +ED 
Sbjct: 98  GLKFVQLSA-VFSGVADLKKAFENARRQAEAGGGTLLFVDEIHRFNRAQQDGFLPVVEDG 156

Query: 133 QLDLMVGEGPSARSVKIN---LSRFTLI 157
            + ++VG      S  +N   LSR  ++
Sbjct: 157 TV-VLVGATTENPSFALNSALLSRCQVM 183


>gi|94266599|ref|ZP_01290281.1| Peptidase S16, ATP-dependent protease La [delta proteobacterium
           MLMS-1]
 gi|93452770|gb|EAT03308.1| Peptidase S16, ATP-dependent protease La [delta proteobacterium
           MLMS-1]
          Length = 809

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 125/289 (43%), Gaps = 68/289 (23%)

Query: 46  AAKARAEALDH--VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------- 93
           A KA+ + L    +  VGPPG+GKT++ + VAR +  NF R + G V  +A         
Sbjct: 339 AVKAQVDKLKGPILCLVGPPGVGKTSICKSVARAMDRNFVRLSLGGVRDEAEIRGHRRTY 398

Query: 94  -GDL-AALLTNLED----RDVLFIDEIHRLSI--------IVEEILYP----AMEDFQLD 135
            G +   +L +++       VL +DE+ ++S+         + E+L P    +  D  LD
Sbjct: 399 IGAMPGKILRSMQQAKVVNPVLCLDEVDKMSMDFRGDPSAALLEVLDPEQNHSFSDHYLD 458

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ-- 193
           L           + +LS    I     +  +  PLQDR  I I++N Y  ED   I Q  
Sbjct: 459 L-----------EYDLSGVFFITTANSLAGIPAPLQDRMEI-IQINGYTEEDKVNIAQGF 506

Query: 194 ---RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
              R  +  G A  D    + A+R          L+RR   +   A  + + R IA +  
Sbjct: 507 LAPRQLEANGFAAGDILFTDPALRE---------LIRR---YTREAGVRNLERAIA-SIC 553

Query: 251 LRLAIDKMGFDQLDLRY-LT--MIARNFGGGPVGIETISAGLSEPRDAI 296
            +LA  ++   Q D RY LT   +AR+      G+     GL+E +D +
Sbjct: 554 RKLARHRLKRQQRDKRYRLTPAAVARHL-----GVAKYRYGLAEEQDRV 597


>gi|328957181|ref|YP_004374567.1| recombination factor protein RarA [Carnobacterium sp. 17-4]
 gi|328673505|gb|AEB29551.1| recombination factor protein RarA [Carnobacterium sp. 17-4]
          Length = 428

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 67/266 (25%), Positives = 108/266 (40%), Gaps = 53/266 (19%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  ++   GQ       K+     +A+   L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPTHIDNIVGQQHLVGKGKIIRRMVEAKM--LSSMILYGPPGIGKTSIASAIAGTTKYA 66

Query: 82  FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
           FR  +     K  DL  ++    +    +L +DEIHRL    ++ L P +E+        
Sbjct: 67  FRILNAASDTKK-DLQIVVEEAKMSGTVILLLDEIHRLDKPKQDFLLPHLEN-------- 117

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLT-NP-LQDRFGIPIRLNFYEIEDLKTIV----- 192
                        R  LI ATT    +T NP ++ R  I   L     ED++  +     
Sbjct: 118 ------------GRIILIGATTENPYITINPAIRSRSQI-FELKTLSNEDIQQAMWNAVN 164

Query: 193 --QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT---------I 241
             ++G     +A+TD+A    +  + G        LR   +  E+A   T         I
Sbjct: 165 DSEKGFGKEKIAITDQALLHFSRATSGD-------LRSSLNGLELAIKSTAPDEQGMINI 217

Query: 242 TREIADAALLRLAI--DKMGFDQLDL 265
           T EIA+  + R A+  DK G    D+
Sbjct: 218 TLEIAEECVQRKALTHDKDGDAHYDV 243


>gi|282164500|ref|YP_003356885.1| replication factor C small subunit [Methanocella paludicola
          SANAE]
 gi|282156814|dbj|BAI61902.1| replication factor C small subunit [Methanocella paludicola
          SANAE]
          Length = 332

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 5/67 (7%)

Query: 12 VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
          ++ +D      RP+TL+E  GQ +    LK +++        L H+LF GPPG+GKT  A
Sbjct: 11 MASDDVWTEKYRPKTLDEVIGQEQIVRRLKSYVKTGN-----LPHLLFSGPPGVGKTACA 65

Query: 72 QVVAREL 78
            +A+++
Sbjct: 66 VALAKDM 72


>gi|150010979|gb|ABR57146.1| ATPase AAA family protein [Staphylococcus xylosus]
          Length = 425

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 67/136 (49%), Gaps = 12/136 (8%)

Query: 20  SLLRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           S +RP  ++E   Q   V     ++  +E  +     L  ++F GPPG+GKT++A+ ++ 
Sbjct: 8   SRMRPSNIDEIISQEHLVGPKGIIRRMVETKR-----LSSMIFYGPPGIGKTSIAKAISG 62

Query: 77  ELGVNFRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
                FR  +  V     D+  ++    +  + +L +DEIHRL    ++ L P +E+ ++
Sbjct: 63  STQFKFRQLNA-VTNTKKDMQLIVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKI 121

Query: 135 DLMVGEGPSARSVKIN 150
            +++G   S     IN
Sbjct: 122 -VLIGATTSNPYHAIN 136


>gi|124485340|ref|YP_001029956.1| replication factor C small subunit [Methanocorpusculum labreanum Z]
 gi|158512813|sp|A2SQT3|RFCS_METLZ RecName: Full=Replication factor C small subunit; Short=RFC small
           subunit; AltName: Full=Clamp loader small subunit
 gi|124362881|gb|ABN06689.1| replication factor C small subunit [Methanocorpusculum labreanum Z]
          Length = 321

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 85/217 (39%), Gaps = 37/217 (17%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           I   RP+ L E  GQ +    L+ ++       +AL H+LF G  G+GKTT A  +ARE+
Sbjct: 9   IEKYRPKNLAEVVGQQDVVERLRSYVAT-----KALPHLLFTGSAGVGKTTCAVALAREM 63

Query: 79  -----GVNFRSTSGP------VIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEIL 125
                 +NFR  +        V+       A    L D    +LF+DE   L+   +  L
Sbjct: 64  FGDTWNMNFRELNASDERGIDVVRNQIKQFARTAPLGDATFKILFLDEADALTQDAQAAL 123

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
              ME++                    RF L  +      + +P+Q R  I  R      
Sbjct: 124 RRTMENYA----------------ETCRFIL--SCNYSSKIIDPIQSRCAI-YRFRPLTD 164

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
           E +   + R AK  G+ + + A   I   S G  R A
Sbjct: 165 EAISEEIARIAKKEGITIDEGAYVAITYVSLGDMRKA 201


>gi|332364543|gb|EGJ42314.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
           SK355]
          Length = 422

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  +++  GQ     + K+     +A    L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPTDIDQIIGQQHLVGSGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTKFA 66

Query: 82  FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +  V +K       + A     L    VL +DEIHRL    ++ L P +E   L +
Sbjct: 67  FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121

Query: 137 MVG 139
           M+G
Sbjct: 122 MIG 124


>gi|221135429|ref|ZP_03561732.1| recombination factor protein RarA [Glaciecola sp. HTCC2999]
          Length = 440

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 5/101 (4%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDL--AALLTNLEDRDVLFIDEI 114
           +L  GPPG GKTTLAQ++A+ +  N    S  V +   D+  A  +T+     ++F+DE+
Sbjct: 46  MLLWGPPGTGKTTLAQIIAKHIDANLIVLSA-VTSGVKDIRDAMAMTHPGVVTIVFVDEV 104

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSR 153
           HR +   ++   P +E   +  +    E PS       LSR
Sbjct: 105 HRFNKSQQDAFLPFIESGAITFIGATTENPSFSCNNALLSR 145


>gi|300690797|ref|YP_003751792.1| Replication-associated recombination protein A [Ralstonia
           solanacearum PSI07]
 gi|299077857|emb|CBJ50495.2| Replication-associated recombination protein A [Ralstonia
           solanacearum PSI07]
          Length = 436

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 9/115 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP +++E  GQ       K  +  A A  E    +L+ GPPG+GKTTLA+++A      
Sbjct: 7   LRPHSVDEVIGQQHLLGPGKP-LRVAFASGEPHSMILW-GPPGVGKTTLARLMADAFDAE 64

Query: 82  FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130
           F + S  V++   D+   +   E       R ++F+DE+HR +   ++   P +E
Sbjct: 65  FIALSA-VLSGVKDIREAVERAEQFRAHGRRTLVFVDEVHRFNKSQQDAFLPHVE 118


>gi|325474698|gb|EGC77884.1| DNA polymerase III [Treponema denticola F0402]
          Length = 468

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 99/230 (43%), Gaps = 29/230 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  E+  GQ    + L+  IEA K  A A    LF GP G GKT+ A+++A+ L    
Sbjct: 11  RPQRFEDLLGQEFVAATLQKSIEAGKI-AHAY---LFSGPRGCGKTSSARILAKVLNC-- 64

Query: 83  RSTSGPVIAKAGDLAAL--LTNLEDRDVLFIDEIHRLSI-----IVEEILYPAMEDFQLD 135
               GP     G   +   +T     DV+ ID     S+     I +EIL+P   +    
Sbjct: 65  --AEGPRPTPCGHCTSCEEITAGSCLDVIEIDGASNTSVNDVRQIKDEILFPPNSNRYKI 122

Query: 136 LMVGE----GPSA-----RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF--YE 184
            ++ E      SA     ++++        I ATT +  +   ++ R     + NF    
Sbjct: 123 YIIDEVHMLSTSAFNALLKTIEEPPPYVVFIFATTEIHKVPATIKSRCQ---QFNFKLVS 179

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
           IE LK  +   A   G++  DEA   IA  + G+ R A  L  +V  F++
Sbjct: 180 IEILKQALADAAAELGISADDEALYWIAREATGSVRDAYTLFDQVAAFSD 229


>gi|313225768|emb|CBY07242.1| unnamed protein product [Oikopleura dioica]
          Length = 329

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP  L++     E  S +K FIE      E L H+LF GPPG GKT+    VA+EL
Sbjct: 15 RPNKLDDLISHTEIISTIKKFIEN-----EQLPHLLFYGPPGTGKTSTILAVAKEL 65


>gi|308190041|ref|YP_003922972.1| Holliday junction DNA helicase RuvB [Mycoplasma fermentans JER]
 gi|307624783|gb|ADN69088.1| Holliday junction DNA helicase RuvB [Mycoplasma fermentans JER]
          Length = 154

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 75/143 (52%), Gaps = 5/143 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           L P   +EF GQ +   +L + ++ +K     + +++FV P G GK +LA ++++    +
Sbjct: 4   LTPINFKEFRGQKDLIKSLIILLQESKK----IPNMIFVAPKGYGKYSLANIISQFKDRS 59

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            +  +   I    +L  +L NL++  +LFI++I++L   ++++L+       LD +    
Sbjct: 60  LQPITSNNIVDEFELLNILANLKNNAILFIEDINKLKPELKKLLFDIYNSINLDKVEKIC 119

Query: 142 PSARSVKI-NLSRFTLIAATTRV 163
            S + +KI N S    I ++ ++
Sbjct: 120 YSNKRLKIKNFSIIGTINSSNQI 142


>gi|270307654|ref|YP_003329712.1| Holliday junction DNA helicase [Dehalococcoides sp. VS]
 gi|270153546|gb|ACZ61384.1| Holliday junction DNA helicase [Dehalococcoides sp. VS]
          Length = 312

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 9/167 (5%)

Query: 51  AEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLF 110
           AE   H++  GPP L KT     + +  G       G   +KAG L  L+   E + +L 
Sbjct: 118 AEKPVHIMLTGPPALAKTLFLWDIEQTFGEQAIWLVGSATSKAG-LWDLVAEREPK-ILL 175

Query: 111 IDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           IDE+ +++ +    L   ME  +L          R + IN +   ++AA+ R+  L+  L
Sbjct: 176 IDEMDKMNAVDMAALLTLMEGGRL----VRAKRGRELDIN-NPLKVVAASNRLEKLSPEL 230

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRG 217
           + RF I  +LN Y   +  T+V +G  +    +++E A +IA R  G
Sbjct: 231 RSRFAIR-KLNPYSRSEFLTVV-KGVLVRKENLSEEMAQDIASRLDG 275


>gi|160947516|ref|ZP_02094683.1| hypothetical protein PEPMIC_01450 [Parvimonas micra ATCC 33270]
 gi|158446650|gb|EDP23645.1| hypothetical protein PEPMIC_01450 [Parvimonas micra ATCC 33270]
          Length = 428

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 53/118 (44%), Gaps = 14/118 (11%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L  F GQ     N  V     K        ++  GPPG GKT+LA +++      
Sbjct: 22  MRPKDLSFFIGQDNIIKNNSVLKNMIKNNR--FSSMILYGPPGSGKTSLANIISSTTDNY 79

Query: 82  FRS----TSGP-----VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           F      TSG      +I  A D  ++      R +LFIDEIHR + + ++ L   +E
Sbjct: 80  FVKISAVTSGTKEIKEIIELAKDNLSMYN---KRTILFIDEIHRFNKMQQDYLLEFVE 134


>gi|54294651|ref|YP_127066.1| recombination factor protein RarA [Legionella pneumophila str.
           Lens]
 gi|53754483|emb|CAH15967.1| hypothetical protein lpl1728 [Legionella pneumophila str. Lens]
          Length = 434

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 15/118 (12%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+ + E  GQ         L++    +K     L  ++  GPPG+GKTT+A++ A+  
Sbjct: 16  LRPQHINEVIGQSHLLGEGKPLRLCFMGSK-----LHSMILWGPPGVGKTTIARLTAQAF 70

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130
              + + S  V +   D+ A +   ++      + +LFIDEIHR +   ++ L P  E
Sbjct: 71  DCEWIALSA-VFSGVKDIRAAIEKAQEYLIHDKQTILFIDEIHRFNKAQQDALLPYTE 127


>gi|157867059|ref|XP_001682084.1| peroxisome assembly protein [Leishmania major strain Friedlin]
 gi|68125536|emb|CAJ03401.1| putative peroxisome assembly protein [Leishmania major strain
           Friedlin]
          Length = 959

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/32 (65%), Positives = 24/32 (75%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ VA E+G+NF S  GP
Sbjct: 684 VLFYGPPGCGKTLLAKAVATEMGMNFISVKGP 715


>gi|50294179|ref|XP_449501.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49528815|emb|CAG62477.1| unnamed protein product [Candida glabrata]
          Length = 331

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 6/63 (9%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81
          RP+TL++  GQ E    +K F++  K     L H+LF GPPG GKT+    +A+++ G N
Sbjct: 16 RPQTLDDVYGQREVVGTVKKFVQEGK-----LPHLLFYGPPGTGKTSTIVALAKDIYGKN 70

Query: 82 FRS 84
          + +
Sbjct: 71 YSN 73


>gi|11493971|gb|AAG35725.1|AF208046_1 RuvB-like RUVBL1 [Mus musculus]
          Length = 445

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 13/119 (10%)

Query: 51  AEALDHVLFVGPPGLGKTTLAQVVA---RELGVNFRSTSGPVIAKAGDLAALLTNLED-- 105
           A  +  ++  GPPG GKTTLA ++A   ++  + F + S    AK  D+  ++   ++  
Sbjct: 38  ANEIPSLILWGPPGCGKTTLAHIIANNSKKHSIRFVTLSA-TNAKTNDVRDVIKQAQNEK 96

Query: 106 -----RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLI 157
                + +LFIDEIHR +   ++   P +E   + L+    E PS +     LSR  +I
Sbjct: 97  SFFKRKTILFIDEIHRFNKSQQDTFLPHVECGTITLIGATTENPSFQVNAALLSRCRVI 155


>gi|332358379|gb|EGJ36204.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
           SK49]
          Length = 422

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  +++  GQ     + K+     +A    L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPTDIDQIIGQQHLVGSGKIIRRMVEANR--LSSMILYGPPGIGKTSIASAIAGTTKFA 66

Query: 82  FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +  V +K       + A     L    VL +DEIHRL    ++ L P +E   L +
Sbjct: 67  FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121

Query: 137 MVG 139
           M+G
Sbjct: 122 MIG 124


>gi|322386659|ref|ZP_08060284.1| crossover junction endodeoxyribonuclease [Streptococcus cristatus
           ATCC 51100]
 gi|321269332|gb|EFX52267.1| crossover junction endodeoxyribonuclease [Streptococcus cristatus
           ATCC 51100]
          Length = 422

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP ++++  GQ       K+     +A    L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPTSIDQIIGQQHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTKYA 66

Query: 82  FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +  V +K       + A     L    VL +DEIHRL    ++ L P +E   L +
Sbjct: 67  FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121

Query: 137 MVG 139
           M+G
Sbjct: 122 MIG 124


>gi|113475969|ref|YP_722030.1| vesicle-fusing ATPase [Trichodesmium erythraeum IMS101]
 gi|110167017|gb|ABG51557.1| Vesicle-fusing ATPase [Trichodesmium erythraeum IMS101]
          Length = 639

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 56/113 (49%), Gaps = 17/113 (15%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQV 73
           LRP TL +  G  E    L+  IE    R + L          VL VGPPG GKT  A+ 
Sbjct: 100 LRP-TLRDIGGMSEVIQELREVIELPLKRPDLLTKLGLEPSRGVLLVGPPGTGKTLTAKA 158

Query: 74  VARELGVNFRSTSGP-VIAK-----AGDLAALLTNLEDRD--VLFIDEIHRLS 118
           +A ELG+N+ + +GP V++K      G L  +    +     ++FIDEI  ++
Sbjct: 159 IAEELGLNYIAINGPEVMSKYYGEAEGKLRDIFAKAKKSAPCLIFIDEIDSIA 211



 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 25/41 (60%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           K +A+A   +L  G PG GKT LA+ VA +   NF + +GP
Sbjct: 402 KTKAKAPKGILLWGEPGTGKTLLAKAVASQAQANFIAVNGP 442


>gi|207109046|ref|ZP_03243208.1| recombination factor protein RarA [Helicobacter pylori
          HPKX_438_CA4C1]
          Length = 83

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 2/56 (3%)

Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
          SLL P++LE+F GQ           +A +++     H  F GPPG+GKT+LAQ++A
Sbjct: 5  SLLNPKSLEDFLGQEHLVGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIA 58


>gi|50292021|ref|XP_448443.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49527755|emb|CAG61404.1| unnamed protein product [Candida glabrata]
          Length = 559

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 69/139 (49%), Gaps = 22/139 (15%)

Query: 22  LRPRTLEEFTGQVEACSN----LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           LRP+ + ++ GQ    S     L  +++        +  ++  GPPG+GKTTLA+++ + 
Sbjct: 122 LRPKEIRDYVGQQHILSQESGVLNKYVQEG-----LVPSMILWGPPGVGKTTLARLLTKT 176

Query: 78  LGVN-FRST---SGPVIAKAGDLAALLTN-------LEDRDVLFIDEIHRLSIIVEEILY 126
             ++  R T   +    A A +L ++           + R VLFIDEIHR +   +++L 
Sbjct: 177 ASLHGSRYTMVETSATKANAQELRSIFEKGRKEYQLTKRRVVLFIDEIHRFNKAQQDLLL 236

Query: 127 PAMEDFQLDLM--VGEGPS 143
           P +E+  + L+    E PS
Sbjct: 237 PHVENGDIVLIGATTENPS 255


>gi|7524828|ref|NP_045830.1| hypothetical protein ChvulCp071 [Chlorella vulgaris]
 gi|3023786|sp|P56369|FTSHL_CHLVU RecName: Full=ATP-dependent zinc metalloprotease FtsH homolog
 gi|2224421|dbj|BAA57905.1| unnamed protein product [Chlorella vulgaris]
          Length = 1720

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/118 (35%), Positives = 55/118 (46%), Gaps = 15/118 (12%)

Query: 51   AEALDH-VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL---EDR 106
            +E L H +L  GPPG GKT L Q +A E  V     SG  + + G+ AA    L   E R
Sbjct: 1003 SETLPHGILLTGPPGTGKTLLVQALAGEAQVPVIVLSGSSLMEPGESAAFKLQLVFQEAR 1062

Query: 107  D----VLFIDEIHRLSIIVEEILY------PAMEDFQLDLMVGEGPSARSVKINLSRF 154
                 ++FIDEI  LS    ++L       P  E F    ++   PS +SVK   S F
Sbjct: 1063 QLAPCIVFIDEIDTLSSKRSQLLQNPMANDPGFESFLESFLLQSKPS-QSVKKTESFF 1119


>gi|323490016|ref|ZP_08095237.1| hypothetical protein GPDM_11715 [Planococcus donghaensis MPA1U2]
 gi|323396312|gb|EGA89137.1| hypothetical protein GPDM_11715 [Planococcus donghaensis MPA1U2]
          Length = 429

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 60/112 (53%), Gaps = 7/112 (6%)

Query: 22  LRPRTLEEFTGQVEAC-SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           +RPRT++E  GQ +   S+  ++   +     ++   L  G PG+GKT++A  +A    +
Sbjct: 10  MRPRTIDEVVGQKDVIGSHTALYKMISNGHVPSM---LLYGEPGIGKTSIAHAIAGTSNL 66

Query: 81  NFRSTSGPVIAKAGDLAALLTN--LEDRDVLFIDEIHRLSIIVEEILYPAME 130
            F + +     K  D+  ++T   +  + +LF+DEIHR + + ++ L P +E
Sbjct: 67  PFIALNATTSGKK-DVEEVVTEARMTGKVLLFLDEIHRFNKLQQDALLPHVE 117


>gi|290980685|ref|XP_002673062.1| predicted protein [Naegleria gruberi]
 gi|284086643|gb|EFC40318.1| predicted protein [Naegleria gruberi]
          Length = 822

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 42/80 (52%), Gaps = 8/80 (10%)

Query: 47  AKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLE 104
           AK   EA   VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + N+ 
Sbjct: 516 AKFGQEASKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRNIF 575

Query: 105 DRD------VLFIDEIHRLS 118
           ++       VLF DE+  ++
Sbjct: 576 NKARAAAPCVLFFDELDSIA 595



 Score = 39.3 bits (90), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  A L    E+ +     +
Sbjct: 253 ILMYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESEANLRKAFEEAEKNAPAI 312

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 313 IFIDEIDSIA 322


>gi|224419089|ref|ZP_03657095.1| endopeptidase Clp ATP-binding chain A [Helicobacter canadensis MIT
           98-5491]
 gi|253828027|ref|ZP_04870912.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Helicobacter
           canadensis MIT 98-5491]
 gi|313142599|ref|ZP_07804792.1| endopeptidase clp ATP-binding chain a [Helicobacter canadensis MIT
           98-5491]
 gi|253511433|gb|EES90092.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Helicobacter
           canadensis MIT 98-5491]
 gi|313131630|gb|EFR49247.1| endopeptidase clp ATP-binding chain a [Helicobacter canadensis MIT
           98-5491]
          Length = 746

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 68/150 (45%), Gaps = 33/150 (22%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFR-----------STSGPVIAKAG----DLAALLTN 102
           LF GP G+GKT LA+ +A+ LG+NF            S+SG + A AG    D   +LT 
Sbjct: 479 LFSGPSGVGKTELAKEIAKALGINFERIDMSEYMEKYSSSGLIGAPAGYVGYDKGGILTE 538

Query: 103 LEDRD---VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA 159
           +  ++   +L +DEI +    V  I    M++ +L    GE     SV        ++  
Sbjct: 539 MIKKNPHTLLLLDEIEKAHPDVLNIFLQVMDNAKLTDNNGESADFSSV--------ILIM 590

Query: 160 TTRVGLLTNP----LQD---RFGIPIRLNF 182
           T+ VG    P     QD   +F   I+ NF
Sbjct: 591 TSNVGSKEAPTLGFTQDSVAKFNSAIKDNF 620


>gi|147668860|ref|YP_001213678.1| ATPase [Dehalococcoides sp. BAV1]
 gi|146269808|gb|ABQ16800.1| ATPase associated with various cellular activities, AAA_5
           [Dehalococcoides sp. BAV1]
          Length = 307

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 88/187 (47%), Gaps = 9/187 (4%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIH 115
           HV+  GPP L KT     + +  G       G   +KAG L  L+   E + +L IDE+ 
Sbjct: 120 HVMLTGPPALAKTLFLWDIEQTFGEQAIWLVGSATSKAG-LWDLVAEREPK-ILLIDEMD 177

Query: 116 RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
           +++ +    L   ME  +L + V  G   R + IN +   +IAA+ R+  L+  L+ RF 
Sbjct: 178 KMNAVDMAALLTMMEGGRL-VRVKRG---RELDIN-NPLKVIAASNRLEKLSPELRSRFA 232

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
           I  +LN Y   +  T+V +G  +    + ++ A EIA +  G  +     +R  R   +V
Sbjct: 233 IR-KLNPYSRSEFLTVV-KGVLVRKEGLPNDLAEEIARKLDGQSQDVRDAIRIARLAPQV 290

Query: 236 AHAKTIT 242
              K I+
Sbjct: 291 GVDKAIS 297


>gi|254519289|ref|ZP_05131345.1| recombination factor protein RarA [Clostridium sp. 7_2_43FAA]
 gi|226913038|gb|EEH98239.1| recombination factor protein RarA [Clostridium sp. 7_2_43FAA]
          Length = 416

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 68/143 (47%), Gaps = 10/143 (6%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           ++RP+TLE+F GQ +  +  K        +   + + +  GPPG GKTTLA ++A  +  
Sbjct: 10  IMRPKTLEDFVGQKDILAKGKPLYNLITNKM--IPNCILYGPPGTGKTTLANIMANYVDR 67

Query: 81  NFRSTSGPVIAKAGDLAALLTNLE-----DRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
            F   +    A   D+  +  +L+     +  V++IDE+   S   ++ L   +E+ ++ 
Sbjct: 68  KFYKLNA-TTASVKDIQEITESLDSLLNYNGVVIYIDELQHFSKKQQQALLEFIENGRVT 126

Query: 136 LMVG--EGPSARSVKINLSRFTL 156
           L+    E P     K  LSR  +
Sbjct: 127 LIASTTENPYFAIHKAILSRCNI 149


>gi|89901945|ref|YP_524416.1| recombination factor protein RarA [Rhodoferax ferrireducens T118]
 gi|89346682|gb|ABD70885.1| Recombination protein MgsA [Rhodoferax ferrireducens T118]
          Length = 435

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 100/247 (40%), Gaps = 39/247 (15%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPRTL E  GQ +       L++  E+ +  +      +  GPPG GKTT+A+++A   
Sbjct: 19  LRPRTLLEVIGQQQLLGEGMALRIAFESGQPHS-----CILWGPPGTGKTTIARLMADAF 73

Query: 79  GVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
              F + S  +     I +A + A +      R ++F+DE+HR +   ++     +E   
Sbjct: 74  DAQFITISAVLGGVKDIREAVEQAQVAQGQGRRTIVFVDEVHRFNKSQQDAFLAHVES-- 131

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGL--LTNPLQDRFGIPIRLNFYEIEDLKTI 191
                               FT I ATT      + + L  R  + + L     +DL+ I
Sbjct: 132 ------------------GLFTFIGATTENPSFEVNSALLSRAAVYV-LQPLAPQDLEQI 172

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           + R   L  L   ++ A E   R  G      R L    +   VA  +    EI D  L 
Sbjct: 173 IARALALQALPAIEKIASE---RLVGFADGDARRLLNTLEMLSVAATQERVSEITDPWLQ 229

Query: 252 RLAIDKM 258
           ++  ++M
Sbjct: 230 KVLGERM 236


>gi|320594099|gb|EFX06502.1| aaa family ATPase [Grosmannia clavigera kw1407]
          Length = 645

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 87/194 (44%), Gaps = 21/194 (10%)

Query: 22  LRPRTLEEFTGQVEACSN--LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +RP+ L++  GQ     N  L+  IEA +     +  ++  G  G GKTT+A+ +A+++G
Sbjct: 206 MRPQDLDDVFGQELVGPNGVLRALIEADR-----VPSMILWGGSGTGKTTIARCIAQQVG 260

Query: 80  VNF---RSTSGPVIAKAGDLAALLTN----LEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
             F    +T+   I++   L    +N       + +LF DEIHR +   +++    +E  
Sbjct: 261 SRFVEMNATNSGGISECKKLFQDASNELALTGRKTILFCDEIHRFTKAQQDVFLKPVEAG 320

Query: 133 QLDLM--VGEGPSARSVKINLSR---FTLIAATTR--VGLLTNPLQDRFGIPIRLNFYEI 185
            + L+    E PS R V   LSR   FTL    T     +L   +    GIP   N    
Sbjct: 321 TITLIGATTENPSFRIVTALLSRCRTFTLAPLATEDVRCILERAVLQETGIPASDNNQGS 380

Query: 186 EDLKTIVQRGAKLT 199
            +   I +   KLT
Sbjct: 381 PNETDISEETKKLT 394


>gi|213621125|ref|ZP_03373908.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 123

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 51/102 (50%), Gaps = 13/102 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP  L ++ GQ   + A   L   IEA       L  ++  GPPG GKTTLA+V+AR  
Sbjct: 20  MRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74

Query: 79  GVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIH 115
             +       TSG   I +A + A    N   R +LF+DE+H
Sbjct: 75  SADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVH 116


>gi|150399923|ref|YP_001323690.1| AAA family ATPase [Methanococcus vannielii SB]
 gi|150012626|gb|ABR55078.1| AAA family ATPase, CDC48 subfamily [Methanococcus vannielii SB]
          Length = 781

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 46/105 (43%), Gaps = 16/105 (15%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
           T E+  G  E    ++  +E      E  D         VL  GPPG GKT LA+ VA E
Sbjct: 175 TYEDIGGLKEEVKKIREMVELPMRYPELFDKLGIEPPKGVLLAGPPGTGKTLLAKAVANE 234

Query: 78  LGVNFRSTSGPVIAKA------GDLAALLTNLEDR--DVLFIDEI 114
            G NF + +GP I          +L  +    E+    ++FIDEI
Sbjct: 235 AGANFYTINGPEIMSKYVGETEENLRKIFEEAEENSPSIIFIDEI 279



 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 20/34 (58%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL  GPPG GKT LA+ VA E   NF S  GP I
Sbjct: 544 VLLFGPPGTGKTLLAKAVANESEANFISVKGPEI 577


>gi|46117090|ref|XP_384563.1| hypothetical protein FG04387.1 [Gibberella zeae PH-1]
          Length = 1226

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 72/153 (47%), Gaps = 18/153 (11%)

Query: 22  LRPRTLEEFTGQ--VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +RPRTL+E  GQ  V     L+  IE+++     +  ++  G  G GKTT+A+ +A  +G
Sbjct: 818 MRPRTLDEVCGQDLVGPTGVLRSLIESSQ-----VPSMILWGASGTGKTTIARCIAHMVG 872

Query: 80  VNF---RSTSGPVIAKAGDLAALLTNLE---DRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             F    +TS  V            +L     + ++F DEIHR +   +++    +E   
Sbjct: 873 SRFIELNATSTGVSECKKYFQEATNDLALTGRKTIIFCDEIHRFNKAQQDVFLKPVEAGT 932

Query: 134 LDLM--VGEGPSARSVKINLSR---FTLIAATT 161
           + L+    E PS +     LSR   FTL + TT
Sbjct: 933 VTLIGATTENPSFKVASALLSRCRTFTLRSLTT 965


>gi|302759525|ref|XP_002963185.1| hypothetical protein SELMODRAFT_79406 [Selaginella moellendorffii]
 gi|300168453|gb|EFJ35056.1| hypothetical protein SELMODRAFT_79406 [Selaginella moellendorffii]
          Length = 366

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 87/207 (42%), Gaps = 43/207 (20%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLT-------NLEDRD 107
           VLF GPPG GKT+ A+V+A + GV        V+     G+   LL+       +  D  
Sbjct: 125 VLFEGPPGCGKTSCARVIASQAGVPLLYVPLEVVTSKYYGESERLLSSVFNAGNDFPDGA 184

Query: 108 VLFIDEIHRLSIIVEEILYPA-----------MEDFQLDLMVGEGPSARSVKINLSRFTL 156
           ++F+DEI  L+   +  ++ A           M+ F+ D                 R  +
Sbjct: 185 IVFLDEIDSLATSRDSDMHEATRRMLSVLLRQMDGFEQD----------------KRIVV 228

Query: 157 IAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSR 216
           IAAT R   L   L  RF   I  +  +++  + IV + A+     ++ +    +A  S 
Sbjct: 229 IAATNRKQDLDPALLSRFDASITFDLPDLQTREEIVAQYAR----HLSRKELSSVAATSE 284

Query: 217 GTPRIAGRLLRRVRDFAEVAHAKTITR 243
           G   ++GR LR V   AE   A  I R
Sbjct: 285 G---MSGRDLRDVCQQAERKWASKILR 308


>gi|160902770|ref|YP_001568351.1| recombination factor protein RarA [Petrotoga mobilis SJ95]
 gi|160360414|gb|ABX32028.1| AAA ATPase central domain protein [Petrotoga mobilis SJ95]
          Length = 411

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 104/246 (42%), Gaps = 39/246 (15%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           ++RP+ ++E  G  +    LK +I+  K R+      +  G PG GK+T+ + +  E+  
Sbjct: 10  IIRPKKVDEVLGNEKLKEILKTWIKNKKVRS-----FIIYGEPGSGKSTIVRALINEIKD 64

Query: 81  NFR--STSGPVIAKAG--DLAALLTNLEDR-DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
            +   S SG +  K    D+     NL  +  +LF+DEIHRL+   ++ L  ++E  +L 
Sbjct: 65  YYDVFSISGAIEGKKKIKDIIEQKNNLFTKPKLLFVDEIHRLNKAEQDTLLLSVETGELT 124

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           L +G      ++ +N +  + +       L+T+  +  F         +IED        
Sbjct: 125 L-IGATTENPAISVNPALLSRVLVFKTKELITDDYEKLFQ--------QIEDY------- 168

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT----REIADAALL 251
                L +T EA        +     AG  +RR+ +  E A+   I       + D    
Sbjct: 169 --YKDLKITKEA-------RKALIEYAGNDIRRIMNLIETANEAGINSIDLEFLKDFTGY 219

Query: 252 RLAIDK 257
           RL  DK
Sbjct: 220 RLTYDK 225


>gi|313124845|ref|YP_004035109.1| replication factor c small subunit [Halogeometricum borinquense
          DSM 11551]
 gi|312291210|gb|ADQ65670.1| replication factor C small subunit [Halogeometricum borinquense
          DSM 11551]
          Length = 328

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 6/66 (9%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          I   RP+TL++  GQ +    L+ +IE      + L H+LF GP G+GKTT A  +AR +
Sbjct: 18 IEKYRPQTLDDVYGQEDIVERLRSYIEQ-----DDLPHLLFAGPAGVGKTTSATAIARAI 72

Query: 79 -GVNFR 83
           G ++R
Sbjct: 73 YGDDWR 78


>gi|195588464|ref|XP_002083978.1| GD14011 [Drosophila simulans]
 gi|194195987|gb|EDX09563.1| GD14011 [Drosophila simulans]
          Length = 611

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/42 (50%), Positives = 28/42 (66%)

Query: 47  AKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           ++A + A+  VL  GPPG GKT LA+ +A E G+NF S  GP
Sbjct: 356 SRAASVAVKRVLLCGPPGCGKTLLAKAIANEAGINFISVKGP 397


>gi|300707453|ref|XP_002995933.1| hypothetical protein NCER_101048 [Nosema ceranae BRL01]
 gi|239605177|gb|EEQ82262.1| hypothetical protein NCER_101048 [Nosema ceranae BRL01]
          Length = 788

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ VA E   NF S  GP  +    G+  A +  L DR       V
Sbjct: 525 VLFYGPPGCGKTLLAKAVATECKANFISVKGPELLTMWYGESEANVRELFDRARAAAPCV 584

Query: 109 LFIDEIHRLS 118
           LF DEI  ++
Sbjct: 585 LFFDEIDSVA 594



 Score = 36.6 bits (83), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           +L  GPPG GKT +A+ +A E G      +GP I    AG+    L    D        +
Sbjct: 252 ILLYGPPGSGKTLIAKAIANETGAFIYMINGPEIMSKMAGESENNLRKAFDEAEKNKPAI 311

Query: 109 LFIDEIHRLS 118
           +FIDE+  L+
Sbjct: 312 IFIDEVDSLA 321


>gi|327459193|gb|EGF05541.1| AAA family ATPase [Streptococcus sanguinis SK1057]
          Length = 422

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 58/123 (47%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP  +++  GQ       K+     +A    L  ++  GPPG+GKT++A  +A      
Sbjct: 9   LRPTDIDQIIGQQHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTKYA 66

Query: 82  FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +  V +K       + A     L    VL +DEIHRL    ++ L P +E   L +
Sbjct: 67  FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121

Query: 137 MVG 139
           M+G
Sbjct: 122 MIG 124


>gi|312882487|ref|ZP_07742228.1| recombination factor protein RarA [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309369887|gb|EFP97398.1| recombination factor protein RarA [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 448

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 9/116 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  LE + GQ       K    A +A    L  ++  GPPG GKTTLA++ A+     
Sbjct: 21  MRPNKLEGYIGQSHILGKGKPLRRAIEA--GHLHSMILWGPPGTGKTTLAELAAQYADAE 78

Query: 82  FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMED 131
               S  V +   ++   +    +      R VLF+DE+HR +   ++   P +ED
Sbjct: 79  VERVSA-VTSGVKEIRLAIDKARENKLAGRRTVLFVDEVHRFNKSQQDAFLPHIED 133


>gi|159905162|ref|YP_001548824.1| AAA family ATPase [Methanococcus maripaludis C6]
 gi|159886655|gb|ABX01592.1| AAA family ATPase, CDC48 subfamily [Methanococcus maripaludis C6]
          Length = 781

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 46/105 (43%), Gaps = 16/105 (15%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
           T E+  G  E    ++  +E      E  D         VL  GPPG GKT LA+ VA E
Sbjct: 175 TYEDIGGLKEEVKKIREMVELPMRYPELFDKLGIEPPKGVLLAGPPGTGKTLLAKAVANE 234

Query: 78  LGVNFRSTSGPVIAKA------GDLAALLTNLEDR--DVLFIDEI 114
            G NF + +GP I          +L  +    E+    ++FIDEI
Sbjct: 235 AGANFYTINGPEIMSKYVGETEENLRKIFEEAEENSPSIIFIDEI 279



 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 20/34 (58%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL  GPPG GKT LA+ VA E   NF S  GP I
Sbjct: 544 VLLFGPPGTGKTLLAKAVANESEANFISVKGPEI 577


>gi|269925952|ref|YP_003322575.1| ATP-dependent protease La [Thermobaculum terrenum ATCC BAA-798]
 gi|269789612|gb|ACZ41753.1| ATP-dependent protease La [Thermobaculum terrenum ATCC BAA-798]
          Length = 846

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 97/225 (43%), Gaps = 54/225 (24%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           + FVGPPG+GKT+L Q +A+ LG  F R + G +  +A              G +   + 
Sbjct: 415 LCFVGPPGVGKTSLGQSIAKALGRKFVRMSLGGIRDEAEIRGHRRTYIGAMPGRIIQSIM 474

Query: 102 NLEDRDVLF-IDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLS 152
             E  D +F +DE+ ++S+  +        E+L PA      D  +        +  +LS
Sbjct: 475 RAESSDPVFMLDEVDKISVGFQGDPAAALLEVLDPAQNHTFRDNYL-------DIPFDLS 527

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT------IVQRGAKLTGLA---- 202
           +   IA    +  +  PL+DR  I I L+ Y  ED K       ++ R  K  GL     
Sbjct: 528 KVMFIATANTLDTIPAPLRDRMEI-IELSGY-TEDEKIHIARQYLIPRQLKANGLKPEEV 585

Query: 203 -VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             TDEA   I    RG  R AG     VR+     H  ++ R++A
Sbjct: 586 DFTDEAIKSII---RGYTREAG-----VRNLER--HIASVLRKLA 620


>gi|154301803|ref|XP_001551313.1| hypothetical protein BC1G_10053 [Botryotinia fuckeliana B05.10]
 gi|150855715|gb|EDN30907.1| hypothetical protein BC1G_10053 [Botryotinia fuckeliana B05.10]
          Length = 558

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 71/152 (46%), Gaps = 26/152 (17%)

Query: 22  LRPRTLEEFTGQ--VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +RPR+L+E  GQ  V     L+  IE  +     +  ++  G  G GKTT+A+ VA  +G
Sbjct: 153 MRPRSLDEVCGQELVGPQGVLRSLIEQDR-----VPSMILWGGAGTGKTTIARCVATMVG 207

Query: 80  VNF---RSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAM 129
             F    STS  V    G++  + T           + ++F DEIHR S   +++    +
Sbjct: 208 SRFVEINSTSSGV----GEVKKIFTEARGELGLTGRKTIIFCDEIHRFSKSQQDVFLGPV 263

Query: 130 EDFQLDLM--VGEGPSARSVKINLSR---FTL 156
           E  Q+ L+    E PS +     LSR   FTL
Sbjct: 264 ESGQITLIGATTENPSFKVQNALLSRCRTFTL 295


>gi|271500827|ref|YP_003333852.1| AAA ATPase central domain-containing protein [Dickeya dadantii
           Ech586]
 gi|270344382|gb|ACZ77147.1| AAA ATPase central domain protein [Dickeya dadantii Ech586]
          Length = 447

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 61/129 (47%), Gaps = 9/129 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP TL ++ GQ       K    A +A    L  ++  GPPG GKTTLA+++      +
Sbjct: 20  MRPVTLAQYIGQQHLLGPGKPLPRAIEA--GQLHSMILWGPPGTGKTTLAELIGHYGQAD 77

Query: 82  FRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
                  TSG   I +A + A    +   R +LF+DE+HR +   ++   P +ED  +  
Sbjct: 78  VERISAVTSGIKEIREAIERARQNRDAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 137

Query: 137 M--VGEGPS 143
           +    E PS
Sbjct: 138 IGATTENPS 146


>gi|15678268|ref|NP_275383.1| replication factor C large subunit [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|42559321|sp|O26342|RFCL_METTH RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit;
           AltName: Full=mthRFC large subunit
 gi|2621289|gb|AAB84746.1| replication factor C, large subunit [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 479

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 8/100 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR----- 76
            RP + +E  G  +  + +K +I+A KA  +    +L VGPPG GKTTLA ++ +     
Sbjct: 7   YRPGSFDEVVGNQKVIAEIKEWIKAWKA-GKPQKPLLLVGPPGTGKTTLAHIIGKEFSDT 65

Query: 77  -ELGVNFRSTSGPVIAKAGDLAALLTNL-EDRDVLFIDEI 114
            EL  + R +   ++  AG+ +A  +    D  ++ +DE+
Sbjct: 66  LELNASDRRSQDALMRSAGEASATRSLFNHDLKLIILDEV 105


>gi|134046525|ref|YP_001098010.1| AAA family ATPase [Methanococcus maripaludis C5]
 gi|132664150|gb|ABO35796.1| AAA family ATPase, CDC48 subfamily [Methanococcus maripaludis C5]
          Length = 784

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 46/105 (43%), Gaps = 16/105 (15%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
           T E+  G  E    ++  +E      E  D         VL  GPPG GKT LA+ VA E
Sbjct: 175 TYEDIGGLKEEVKKIREMVELPMRYPELFDKLGIEPPKGVLLAGPPGTGKTLLAKAVANE 234

Query: 78  LGVNFRSTSGPVIAKA------GDLAALLTNLEDR--DVLFIDEI 114
            G NF + +GP I          +L  +    E+    ++FIDEI
Sbjct: 235 AGANFYTINGPEIMSKYVGETEENLRKIFEEAEENSPSIIFIDEI 279



 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 20/34 (58%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL  GPPG GKT LA+ VA E   NF S  GP I
Sbjct: 544 VLLFGPPGTGKTLLAKAVANESEANFISVKGPEI 577


>gi|18313052|ref|NP_559719.1| moxR related protein [Pyrobaculum aerophilum str. IM2]
 gi|18160556|gb|AAL63901.1| moxR related protein [Pyrobaculum aerophilum str. IM2]
          Length = 301

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/45 (53%), Positives = 32/45 (71%), Gaps = 4/45 (8%)

Query: 39 NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFR 83
           L++ + A  AR     HVLF  PPGLGKTTLA+++A+ LG+NFR
Sbjct: 18 TLELLLSAIIARG----HVLFNDPPGLGKTTLAKILAKALGLNFR 58


>gi|196248596|ref|ZP_03147297.1| stage V sporulation protein K [Geobacillus sp. G11MC16]
 gi|196212321|gb|EDY07079.1| stage V sporulation protein K [Geobacillus sp. G11MC16]
          Length = 310

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 95/221 (42%), Gaps = 40/221 (18%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVAR-ELGVNFRSTSGPVIAKAGDLAALL---TNL 103
           KA  +AL H++F G PG GKTT+A+++ +    +N  S    + A+  DL       T  
Sbjct: 81  KANRQAL-HMIFKGNPGTGKTTVARLLGKLFFEMNVLSKGHFIEAERADLVGEYIGHTAN 139

Query: 104 EDRD--------VLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSV 147
           + RD        VLFIDE + L+   E        + L   MED+  DL+V      R +
Sbjct: 140 KTRDLIKKARGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDYCDDLVVILAGYPREM 199

Query: 148 KINLSRFTLIAATTRVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDE 206
              LS               NP L  RF + I    Y +E+L  I ++  +     +T E
Sbjct: 200 DYFLS--------------LNPGLPSRFPLTIEFPDYTVEELVQIAKQMLREREYEMTPE 245

Query: 207 AACEIAMRSRGTPRIAGRLL----RRVRDFAEVAHAKTITR 243
           A  ++ +   GT   AGR+     R VR+  E A  K   R
Sbjct: 246 AERKLYVHLEGTLEAAGRMKFSNGRYVRNLIEKAIRKQAVR 286


>gi|167042397|gb|ABZ07124.1| putative ATPase family associated with various cellular activities
           (AAA) [uncultured marine crenarchaeote HF4000_ANIW97P9]
          Length = 386

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 9/98 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+   +  G  E+    K+F+E      +    +L VGPPG+GKTTLA + A++ G + 
Sbjct: 8   RPKNFLDLIGNEES---RKLFVEWFTNWKKGTRPILLVGPPGIGKTTLANLAAKQFGYDL 64

Query: 83  RSTSGPVIAKAGDLAALLTN-LEDRDVL-----FIDEI 114
            S +   +    ++  +L+  L ++ VL     FIDE+
Sbjct: 65  ISLNASDVRNKKNIHEILSPVLGNQTVLGTPMIFIDEV 102


>gi|284161621|ref|YP_003400244.1| Replication factor C [Archaeoglobus profundus DSM 5631]
 gi|284011618|gb|ADB57571.1| Replication factor C [Archaeoglobus profundus DSM 5631]
          Length = 755

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 6/64 (9%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81
          RP+TL+E   Q E    LK ++     + + + H+LF GPPG GKT  A  + R+L G N
Sbjct: 11 RPKTLDEVVDQEEVVKRLKNYV-----KQKNIPHLLFAGPPGTGKTATAIALTRDLFGEN 65

Query: 82 FRST 85
          +R  
Sbjct: 66 WRDN 69


>gi|291615033|ref|YP_003525190.1| ATPase AAA [Sideroxydans lithotrophicus ES-1]
 gi|291585145|gb|ADE12803.1| AAA ATPase central domain protein [Sideroxydans lithotrophicus
           ES-1]
          Length = 437

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 16/119 (13%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+ ++E  GQ         L++  ++ K     L  ++  GPPG+GKTTLA+++A   
Sbjct: 18  LRPKHIDEVIGQSHLLGEGKPLRLAFQSGK-----LHSMILWGPPGVGKTTLARLMASAF 72

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAME 130
              F   S  V++   D+   +   E          +LF+DE+HR +   ++   P +E
Sbjct: 73  DAEFVPLSA-VLSGVKDIREAIAQAEATLQQSGRHTILFVDEVHRFNKSQQDAFLPFVE 130


>gi|45357739|ref|NP_987296.1| cell division protein CDC48 [Methanococcus maripaludis S2]
 gi|45047299|emb|CAF29732.1| CDC48 cell division cycle protein family member [Methanococcus
           maripaludis S2]
          Length = 788

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 46/105 (43%), Gaps = 16/105 (15%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
           T E+  G  E    ++  +E      E  D         VL  GPPG GKT LA+ VA E
Sbjct: 175 TYEDIGGLKEEVKKIREMVELPMRYPELFDKLGIEPPKGVLLAGPPGTGKTLLAKAVANE 234

Query: 78  LGVNFRSTSGPVIAKA------GDLAALLTNLEDR--DVLFIDEI 114
            G NF + +GP I          +L  +    E+    ++FIDEI
Sbjct: 235 AGANFYTINGPEIMSKYVGETEENLRKIFEEAEENSPSIIFIDEI 279



 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 20/34 (58%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL  GPPG GKT LA+ VA E   NF S  GP I
Sbjct: 544 VLLFGPPGTGKTLLAKAVANESEANFISVKGPEI 577


>gi|207723627|ref|YP_002254025.1| atpase related to the helicase subunit of the holliday junction
           resolvase protein [Ralstonia solanacearum MolK2]
 gi|206588830|emb|CAQ35792.1| atpase related to the helicase subunit of the holliday junction
           resolvase protein [Ralstonia solanacearum MolK2]
          Length = 436

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 9/115 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP +++E  GQ       K  +  A A  E    +L+ GPPG+GKTTLA+++A      
Sbjct: 7   LRPHSVDEVIGQRHLLGPGKP-LRVAFASGEPHSMILW-GPPGVGKTTLARLMADAFDAE 64

Query: 82  FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130
           F + S  V++   D+   +   E       R ++F+DE+HR +   ++   P +E
Sbjct: 65  FIALSA-VLSGVKDIREAVERAEQFRAHGRRTLVFVDEVHRFNKSQQDAFLPHVE 118


>gi|138894833|ref|YP_001125286.1| stage V sporulation protein K [Geobacillus thermodenitrificans
           NG80-2]
 gi|134266346|gb|ABO66541.1| Stage V sporulation protein K [Geobacillus thermodenitrificans
           NG80-2]
          Length = 305

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 95/221 (42%), Gaps = 40/221 (18%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVAR-ELGVNFRSTSGPVIAKAGDLAALL---TNL 103
           KA  +AL H++F G PG GKTT+A+++ +    +N  S    + A+  DL       T  
Sbjct: 76  KANRQAL-HMIFKGNPGTGKTTVARLLGKLFFEMNVLSKGHFIEAERADLVGEYIGHTAN 134

Query: 104 EDRD--------VLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSV 147
           + RD        VLFIDE + L+   E        + L   MED+  DL+V      R +
Sbjct: 135 KTRDLIKKARGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDYCDDLVVILAGYPREM 194

Query: 148 KINLSRFTLIAATTRVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDE 206
              LS               NP L  RF + I    Y +E+L  I ++  +     +T E
Sbjct: 195 DYFLS--------------LNPGLPSRFPLTIEFPDYTVEELVQIAKQMLREREYEMTPE 240

Query: 207 AACEIAMRSRGTPRIAGRLL----RRVRDFAEVAHAKTITR 243
           A  ++ +   GT   AGR+     R VR+  E A  K   R
Sbjct: 241 AERKLYVHLEGTLEAAGRMKFSNGRYVRNLIEKAIRKQAVR 281


>gi|213621460|ref|ZP_03374243.1| Holliday junction DNA helicase B [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 34

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 23/31 (74%)

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           PY+IQQGF+QRTPRGR+    AW H GI  P
Sbjct: 1   PYLIQQGFLQRTPRGRMATVRAWNHFGITPP 31


>gi|312075109|ref|XP_003140271.1| replication factor C [Loa loa]
 gi|307764567|gb|EFO23801.1| replication factor C [Loa loa]
          Length = 308

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 16/89 (17%)

Query: 5  EGLLSRNVSQEDADISLL--------RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH 56
          +  L+++  Q++A  +L+        RPR +EE   Q E  S LK  +E A      L +
Sbjct: 2  DAFLNQSKKQDNASTTLMEIPWVEKYRPRKVEEVAFQNEVVSVLKKVLEGAD-----LPN 56

Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRST 85
          +LF GPPG GKT+ A  + R+L   FR+T
Sbjct: 57 LLFYGPPGTGKTSAAIALCRQL---FRNT 82


>gi|167045379|gb|ABZ10035.1| putative ATPase family associated with various cellular
          activities (AAA) [uncultured marine microorganism
          HF4000_APKG10F13]
          Length = 323

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 5/64 (7%)

Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
          E+  +   RP TL E  GQ    + L  ++     R +++ H+LF GPPG GKTT +  +
Sbjct: 2  EEIWVEKYRPATLAEVVGQSVVTTRLASYV-----REKSMPHLLFAGPPGTGKTTCSLAL 56

Query: 75 AREL 78
          ARE+
Sbjct: 57 AREM 60


>gi|156538268|ref|XP_001602992.1| PREDICTED: similar to werner helicase interacting protein [Nasonia
           vitripennis]
          Length = 522

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 85/197 (43%), Gaps = 36/197 (18%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL--- 78
           +RP ++  + GQ        +  +   ++ E + +++  GPPG GKT+LA V+A      
Sbjct: 115 MRPNSIMSYVGQKHVLGPETMLYQLL-SKTE-IPNIILWGPPGCGKTSLANVIANTCQHC 172

Query: 79  -GVNFR----STSGPVIAKAGDLAALLTN---LEDRDVLFIDEIHRLSIIVEEILYPAME 130
            G  +R    S +   I+   D   + +N      R V+F+DEIHR +   ++   P +E
Sbjct: 173 PGGKYRYVKLSAAMSGISDVKDAITIASNELKFGRRTVMFMDEIHRFNKTQQDTFLPHIE 232

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
              + L+    E PS          F+L AA          L  R  + I L    IE+L
Sbjct: 233 SGTIILIGATTENPS----------FSLNAA----------LLSRCRV-IVLEKLTIENL 271

Query: 189 KTIVQRGAKLTGLAVTD 205
             I+ R  K  G AV D
Sbjct: 272 TEILIRAIKAAGGAVHD 288


>gi|50365221|ref|YP_053646.1| recombination factor protein RarA [Mesoplasma florum L1]
 gi|50363777|gb|AAT75762.1| putative helicase subunit of Holliday junction resolvase
           [Mesoplasma florum L1]
          Length = 410

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 11/115 (9%)

Query: 21  LLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           LLRP+T  E  GQ         +K  I     R+     ++F GP G+GKT+ A  +A +
Sbjct: 8   LLRPKTTSEIIGQENLLKEDGLIKKMISNNFCRS-----LIFYGPSGVGKTSFAIALAND 62

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIHRLSIIVEEILYPAME 130
           L + +   +     K  +L  ++     ++R +L IDEIHRL+   ++IL   ME
Sbjct: 63  LNIEYDLFNASY-DKKENLTKIIDKAINKERFILIIDEIHRLNRDKQDILLNFME 116


>gi|15669074|ref|NP_247879.1| replication factor C large subunit [Methanocaldococcus jannaschii
          DSM 2661]
 gi|42559434|sp|Q58294|RFCL_METJA RecName: Full=Replication factor C large subunit; Short=RFC large
          subunit; AltName: Full=Clamp loader large subunit
 gi|1591562|gb|AAB98888.1| activator 1 (replication factor C), 53 KD subunit
          [Methanocaldococcus jannaschii DSM 2661]
          Length = 516

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 1/57 (1%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
          RP++L++  G  +    LK +IE+   + E    +L VGPPG GKTTLA  +A + G
Sbjct: 9  RPKSLKDVAGHEKVKEKLKTWIESY-LKGETPKPILLVGPPGCGKTTLAYALANDYG 64


>gi|294341019|emb|CAZ89414.1| putative Holliday junction ATP-dependent DNA helicase ruvB
           [Thiomonas sp. 3As]
          Length = 470

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 62/140 (44%), Gaps = 11/140 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP  L E  GQ       K    A + R   L  +LF GPPG+GKTTLA+++A     +
Sbjct: 37  LRPHHLGEVVGQRHLLGPGKPLRVAFETRR--LHSMLFWGPPGVGKTTLARLMADAFDAD 94

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMED--FQ 133
           F   S  V+A   D+   +   +         ++F+DE+HR +   ++   P +E   F 
Sbjct: 95  FLPLSA-VLAGVKDIRDAVAQAQAAQQRGRATIVFVDEVHRFNKSQQDAFLPHVESGLFT 153

Query: 134 LDLMVGEGPSARSVKINLSR 153
                 E PS       LSR
Sbjct: 154 FIGATTENPSFEVNSALLSR 173


>gi|296136850|ref|YP_003644092.1| AAA ATPase central domain protein [Thiomonas intermedia K12]
 gi|295796972|gb|ADG31762.1| AAA ATPase central domain protein [Thiomonas intermedia K12]
          Length = 470

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 62/140 (44%), Gaps = 11/140 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP  L E  GQ       K    A + R   L  +LF GPPG+GKTTLA+++A     +
Sbjct: 37  LRPHHLGEVVGQRHLLGPGKPLRVAFETRR--LHSMLFWGPPGVGKTTLARLMADAFDAD 94

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMED--FQ 133
           F   S  V+A   D+   +   +         ++F+DE+HR +   ++   P +E   F 
Sbjct: 95  FLPLSA-VLAGVKDIRDAVAQAQAAQQRGRATIVFVDEVHRFNKSQQDAFLPHVESGLFT 153

Query: 134 LDLMVGEGPSARSVKINLSR 153
                 E PS       LSR
Sbjct: 154 FIGATTENPSFEVNSALLSR 173


>gi|258542798|ref|YP_003188231.1| recombination factor protein RarA [Acetobacter pasteurianus IFO
           3283-01]
 gi|256633876|dbj|BAH99851.1| AAA ATPase [Acetobacter pasteurianus IFO 3283-01]
 gi|256636935|dbj|BAI02904.1| AAA ATPase [Acetobacter pasteurianus IFO 3283-03]
 gi|256639988|dbj|BAI05950.1| AAA ATPase [Acetobacter pasteurianus IFO 3283-07]
 gi|256643044|dbj|BAI08999.1| AAA ATPase [Acetobacter pasteurianus IFO 3283-22]
 gi|256646099|dbj|BAI12047.1| AAA ATPase [Acetobacter pasteurianus IFO 3283-26]
 gi|256649152|dbj|BAI15093.1| AAA ATPase [Acetobacter pasteurianus IFO 3283-32]
 gi|256652139|dbj|BAI18073.1| AAA ATPase [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655196|dbj|BAI21123.1| AAA ATPase [Acetobacter pasteurianus IFO 3283-12]
          Length = 453

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 70/148 (47%), Gaps = 19/148 (12%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARA---EALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+ LE+  GQ           E A  R     +L  ++  G PG+GKTT+A+++A+  
Sbjct: 43  LRPQRLEDVVGQAYLLGP-----EGALTRMLERGSLASLILWGGPGVGKTTIARLLAQAA 97

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDF 132
           G+ F   S  V +   DL     N   +       +LF+DEIHR +   ++   P +ED 
Sbjct: 98  GLKFVQLSA-VFSGVADLKKAFENARRQAEIGGGTLLFVDEIHRFNRAQQDGFLPVVEDG 156

Query: 133 QLDLMVGEGPSARSVKIN---LSRFTLI 157
            + ++VG      S  +N   LSR  ++
Sbjct: 157 TV-VLVGATTENPSFALNSALLSRCQVM 183


>gi|600046|emb|CAA55489.1| N1302 [Saccharomyces cerevisiae]
 gi|2253183|emb|CAA96120.1| unnamed protein product [Saccharomyces cerevisiae]
          Length = 472

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 69/148 (46%), Gaps = 23/148 (15%)

Query: 22  LRPRTLEEFTGQVEACS--NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           LRP+ L ++ GQ    S  N  +F      +   +  ++  GPPG+GKT+LA+++ +   
Sbjct: 24  LRPKELRDYVGQQHILSQDNGTLF---KYIKQGTIPSMILWGPPGVGKTSLARLLTKTAT 80

Query: 80  VN----------FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVE 122
            +          F   +    A   +L  +    +        R VLFIDEIHR + + +
Sbjct: 81  TSSNESNVGSRYFMIETSATKANTQELRGIFEKSKKEYQLTKRRTVLFIDEIHRFNKVQQ 140

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKIN 150
           ++L P +E+  + +++G      S ++N
Sbjct: 141 DLLLPHVENGDI-ILIGATTENPSFQLN 167


>gi|307166495|gb|EFN60580.1| Replication factor C subunit 1 [Camponotus floridanus]
          Length = 935

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 58/128 (45%), Gaps = 30/128 (23%)

Query: 11  NVSQEDADI------SLLRPRTLEEFTGQV--EACS-NLKVFI---------------EA 46
           N SQE   I         RP+T+++  GQ   ++C+ NL V++                +
Sbjct: 373 NYSQETTSIGSQPLVEKYRPKTMKQIIGQQGDKSCARNLHVWLRDWYKNRQNSKLKNGSS 432

Query: 47  AKARAEALDHVLFVGPPGLGKTTLAQVVARELGV-----NFRSTSGPVIAKAGDLAALLT 101
            +   E+    L  GPPG+GKTT  QVV +ELG      N   T    + K  +++ LL+
Sbjct: 433 KQTHGESFKAALLSGPPGVGKTTTVQVVCKELGYDLVEFNASDTRNKTLLKE-EVSGLLS 491

Query: 102 NLEDRDVL 109
           N   +D +
Sbjct: 492 NTTMKDYV 499


>gi|222445468|ref|ZP_03607983.1| hypothetical protein METSMIALI_01107 [Methanobrevibacter smithii
          DSM 2375]
 gi|222435033|gb|EEE42198.1| hypothetical protein METSMIALI_01107 [Methanobrevibacter smithii
          DSM 2375]
          Length = 492

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
          RP+TL+E  G  +  + ++ +++   A       +L VGPPG+GKTTLAQ +ARE  
Sbjct: 8  RPKTLDEVVGNNKEKALIQKWVDNWNA-GNPQKPLLLVGPPGIGKTTLAQAIAREFS 63


>gi|224542103|ref|ZP_03682642.1| hypothetical protein CATMIT_01278 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525036|gb|EEF94141.1| hypothetical protein CATMIT_01278 [Catenibacterium mitsuokai DSM
           15897]
          Length = 423

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 59/114 (51%), Gaps = 11/114 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH---VLFVGPPGLGKTTLAQVVAREL 78
           +RP  L++  GQ       ++  +  K      DH   ++  GPPG GKTT+A+ +A +L
Sbjct: 10  MRPIGLDDVIGQKHLVGENRLLKQFVKK-----DHPMSIILYGPPGCGKTTIAKALAHDL 64

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLF--IDEIHRLSIIVEEILYPAME 130
            + +R  +     K  ++  ++T  +  + LF  +DE+HRL+   ++ L P +E
Sbjct: 65  NIPYRIFNASTGNKK-EMDQIITEAKLSEGLFVIVDEVHRLNKAKQDHLLPYIE 117


>gi|134101955|ref|YP_001107616.1| putative sporulation protein (partial match) [Saccharopolyspora
            erythraea NRRL 2338]
 gi|291007034|ref|ZP_06565007.1| putative sporulation protein (partial match) [Saccharopolyspora
            erythraea NRRL 2338]
 gi|133914578|emb|CAM04691.1| putative sporulation protein (partial match) [Saccharopolyspora
            erythraea NRRL 2338]
          Length = 1141

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 65/214 (30%), Positives = 84/214 (39%), Gaps = 47/214 (21%)

Query: 56   HVLFVGPPGLGKTTLAQVVAR---ELGVNFRSTSGPVIAKA---------GDLAALLTNL 103
            H++F GPPG GKTT+A++       LGV  R   G VI            G  A   T  
Sbjct: 915  HLIFGGPPGTGKTTVARLYGEILAALGVLAR---GQVIEVGRANLVGEYVGHTAQRTTEA 971

Query: 104  EDR---DVLFIDEIHRLSII----------VEEILYPAMEDFQLDLMVGEGPSARSVKIN 150
             DR    VLFIDE + LS              + L   MED + +++V     A   +  
Sbjct: 972  FDRARGGVLFIDEAYTLSSQRGSGTDFGREAIDTLVKLMEDHRDEVVV----VAAGYEEQ 1027

Query: 151  LSRFTLIAATTRVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAAC 209
            +  F          L  NP L  RF   +R   Y  ++L TIV + A   G   T     
Sbjct: 1028 MEDF----------LAANPGLSSRFSHRVRFADYTNDELVTIVTQHAASAGYECTGPTVA 1077

Query: 210  EIAMRSRGTPRIA----GRLLRRVRDFAEVAHAK 239
             +       PR A    GR  R+V D A   HAK
Sbjct: 1078 ALRAHFVAVPRGASFGNGRYARQVMDAAVTRHAK 1111



 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 70/162 (43%), Gaps = 39/162 (24%)

Query: 56  HVLFVGPPGLGKTTLAQVVAR---ELGVNFRSTSGPVIAKA-------GDLAALLTNLED 105
           H++F G PG GKTT+A++  +   ELGV  RS     + +A       G  A   T   +
Sbjct: 632 HLVFTGSPGTGKTTVARLYGKILAELGV-LRSGQLVEVGRADLVASIVGGTAMKTTECFE 690

Query: 106 R---DVLFIDEIHRLSIIVE----------EILYPAMEDFQLDLMVGEGPSARSVKINLS 152
           R    VLFIDE + LS              + L   MED + D++V            ++
Sbjct: 691 RALGGVLFIDEAYTLSASSGSGADFGREAIDTLVKLMEDHRDDIVV-----------IVA 739

Query: 153 RFTLIAATTRVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQ 193
            +TL     R  L +NP L  RF   I    Y   DL TIV+
Sbjct: 740 GYTL---EMRKFLASNPGLGSRFSRTIEFADYSSADLVTIVE 778


>gi|302348723|ref|YP_003816361.1| Replication factor C small subunit [Acidilobus saccharovorans
          345-15]
 gi|302329135|gb|ADL19330.1| Replication factor C small subunit [Acidilobus saccharovorans
          345-15]
          Length = 329

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 6/61 (9%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81
          RPR+L+E   Q E    L  F+         + H+LF GPPG GKTT A  +A +L G N
Sbjct: 15 RPRSLKEIVNQKEIVERLSKFVAEKN-----MPHLLFAGPPGTGKTTAAHALAHDLYGDN 69

Query: 82 F 82
          +
Sbjct: 70 Y 70


>gi|323455953|gb|EGB11820.1| hypothetical protein AURANDRAFT_36060 [Aureococcus anophagefferens]
          Length = 571

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT +A+ VA E G NF S  GP +     G+  A + +L D+       +
Sbjct: 300 VLFYGPPGCGKTLIAKAVANECGANFISVKGPELLTMWFGESEANVRSLFDKARAAAPCI 359

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 360 LFFDEMDSIA 369


>gi|260889193|ref|ZP_05900456.1| ATPase, AAA family [Leptotrichia hofstadii F0254]
 gi|260861253|gb|EEX75753.1| ATPase, AAA family [Leptotrichia hofstadii F0254]
          Length = 407

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 65/120 (54%), Gaps = 18/120 (15%)

Query: 23  RPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           RP++L++F GQ   V     L+  IE    R   ++  +F G PG GKTTLA+++A ++ 
Sbjct: 19  RPKSLDDFYGQKRLVGENGILRKIIE----RGNFMN-AIFWGAPGTGKTTLAEIIADKMN 73

Query: 80  VNFRSTSGPVIAKAGDL--------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            ++   +  + A   D+        ++  TN + + +LF+DEIHR + + ++ L   +E+
Sbjct: 74  YHYEYLNA-IKASVTDIKNISDKAHSSFHTNGQ-QTLLFLDEIHRFNKLQQDSLLEDLEN 131


>gi|189423560|ref|YP_001950737.1| ATP-dependent protease La [Geobacter lovleyi SZ]
 gi|189419819|gb|ACD94217.1| ATP-dependent protease La [Geobacter lovleyi SZ]
          Length = 772

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 73/166 (43%), Gaps = 40/166 (24%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA---GDLAALLTNLEDR------ 106
           + FVGPPG+GKT+L + +AR LG  F R + G V  +A   G     +  L  R      
Sbjct: 353 LCFVGPPGVGKTSLGRSIARSLGRKFVRVSLGGVRDEAEIRGHRRTYIGALPGRIIKEIY 412

Query: 107 ------DVLFIDEIHRL--------SIIVEEILYP----AMEDFQLDLMVGEGPSARSVK 148
                  VL +DEI +L        S  + E+L P    + +D  LD           V 
Sbjct: 413 RCGSNNPVLMLDEIDKLSHDFRGDPSSALLEVLDPEQNFSFQDHYLD-----------VP 461

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
            +LS+   I    ++  +  PL+DR  I IRL  Y  E+ + I  R
Sbjct: 462 FDLSKVMFITTANQMDPIPGPLKDRMEI-IRLAGYSSEEKQHIANR 506


>gi|319652986|ref|ZP_08007091.1| hypothetical protein HMPREF1013_03706 [Bacillus sp. 2_A_57_CT2]
 gi|317395335|gb|EFV76068.1| hypothetical protein HMPREF1013_03706 [Bacillus sp. 2_A_57_CT2]
          Length = 275

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108
           +L  GPPG GKT LAQ +A+ELG  F STSG       V   A  +  L  N       V
Sbjct: 190 ILLYGPPGTGKTLLAQAIAKELGATFFSTSGSGFNELFVGVGASRVRNLFQNARKHAPAV 249

Query: 109 LFIDEIHRLS 118
           +FIDE+  L+
Sbjct: 250 VFIDEVDALA 259


>gi|296108730|ref|YP_003615679.1| AAA family ATPase, CDC48 subfamily [Methanocaldococcus infernus ME]
 gi|295433544|gb|ADG12715.1| AAA family ATPase, CDC48 subfamily [Methanocaldococcus infernus ME]
          Length = 903

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 48/109 (44%), Gaps = 16/109 (14%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
           T E+  G  E    ++  IE      E  +         VL VGPPG GKT LA+ VA E
Sbjct: 177 TYEDIGGLKEEVRKVREMIELPMKHPELFEKLGIEPPKGVLLVGPPGTGKTLLAKAVANE 236

Query: 78  LGVNFRSTSGPVIAKA------GDLAALLTNLEDR--DVLFIDEIHRLS 118
            G NF   +GP I          +L  +    E+    ++FIDEI  ++
Sbjct: 237 AGANFYVINGPEIMSKYVGETEENLRKIFEEAEENAPSIIFIDEIDAIA 285



 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 21/34 (61%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL  GPPG GKT LA+ VA E G NF S  GP I
Sbjct: 489 VLLFGPPGTGKTLLAKAVANEAGANFISVKGPEI 522


>gi|325066414|ref|ZP_08125087.1| recombination factor protein RarA [Actinomyces oris K20]
          Length = 400

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 11/113 (9%)

Query: 54  LDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDL------AALLTNLEDRD 107
           L  ++  GPPG GKTT+A+++A   G+ F   S    +   DL      AA    +    
Sbjct: 6   LSSIILWGPPGCGKTTIARLLADRTGLVFEQVSA-TFSGVADLRKVFAAAARRREIGQGT 64

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN---LSRFTLI 157
           +LF+DEIHR +   ++   P +ED  + ++VG      S ++N   LSR  ++
Sbjct: 65  LLFVDEIHRFNRAQQDSFLPYVEDGTV-VLVGATTENPSFELNGALLSRCQVM 116


>gi|167044405|gb|ABZ09082.1| putative ATPase family associated with various cellular activities
           (AAA) [uncultured marine crenarchaeote HF4000_APKG6D3]
          Length = 386

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 9/98 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+   +  G  E+    K+F+E      +    +L VGPPG+GKTTLA + A++ G + 
Sbjct: 8   RPKNFLDLIGNEES---RKLFVEWFTNWKKGTRPILLVGPPGIGKTTLANLAAKQFGYDL 64

Query: 83  RSTSGPVIAKAGDLAALLTN-LEDRDVL-----FIDEI 114
            S +   +    ++  +L+  L ++ VL     FIDE+
Sbjct: 65  ISLNASDVRNKQNIHEILSPVLGNQTVLGTPMIFIDEV 102


>gi|302799697|ref|XP_002981607.1| hypothetical protein SELMODRAFT_114799 [Selaginella moellendorffii]
 gi|300150773|gb|EFJ17422.1| hypothetical protein SELMODRAFT_114799 [Selaginella moellendorffii]
          Length = 366

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 87/207 (42%), Gaps = 43/207 (20%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLT-------NLEDRD 107
           +LF GPPG GKT+ A+V+A + GV        V+     G+   LL+       +  D  
Sbjct: 125 ILFEGPPGCGKTSCARVIASQAGVPLLYVPLEVVTSKYYGESERLLSSVFNAGNDFPDGA 184

Query: 108 VLFIDEIHRLSIIVEEILYPA-----------MEDFQLDLMVGEGPSARSVKINLSRFTL 156
           ++F+DEI  L+   +  ++ A           M+ F+ D                 R  +
Sbjct: 185 IVFLDEIDSLATSRDSDMHEATRRMLSVLLRQMDGFEQD----------------KRIVV 228

Query: 157 IAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSR 216
           IAAT R   L   L  RF   I  +  +++  + IV + A+     ++ +    +A  S 
Sbjct: 229 IAATNRKQDLDPALLSRFDASITFDLPDLQTREEIVAQYAR----HLSRKELSSVAATSE 284

Query: 217 GTPRIAGRLLRRVRDFAEVAHAKTITR 243
           G   ++GR LR V   AE   A  I R
Sbjct: 285 G---MSGRDLRDVCQQAERKWASKILR 308


>gi|300707639|ref|XP_002996019.1| hypothetical protein NCER_100948 [Nosema ceranae BRL01]
 gi|239605277|gb|EEQ82348.1| hypothetical protein NCER_100948 [Nosema ceranae BRL01]
          Length = 305

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 91/210 (43%), Gaps = 24/210 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+ LE   G V+    LK  +     +  ++ H+LF GPPG GKT+ A++ A +L    
Sbjct: 9   RPKDLESVIGNVDTLETLKCIL-----KDHSMPHLLFTGPPGTGKTSSAKIFAFQL---L 60

Query: 83  RSTSGPVIAKAGD---LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
            S  G +   A D   +  + T ++D  +  I  +    II++E           D M  
Sbjct: 61  GSKEGILELNASDDRGIDTVRTLIKDFAMKKILNVPFKIIILDE----------CDSMTT 110

Query: 140 EGPSA--RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
               A  R ++I  S    I        +  P+Q R  + +R +  E + +++ +Q+  +
Sbjct: 111 AAQQAMRRIMEIYSSECKFILICNDFSKIFEPIQSRCAV-LRFDKIESKVIESCLQKIVQ 169

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
              + +TDEA   I     G  R +  +L+
Sbjct: 170 AEHMNITDEALSFIIYICDGDIRQSLNILQ 199


>gi|159041123|ref|YP_001540375.1| AAA family ATPase, CDC48 subfamily protein [Caldivirga
           maquilingensis IC-167]
 gi|157919958|gb|ABW01385.1| AAA family ATPase, CDC48 subfamily [Caldivirga maquilingensis
           IC-167]
          Length = 735

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 53/118 (44%), Gaps = 17/118 (14%)

Query: 24  PRTLEEFTGQVE-ACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVV 74
           PR   E  G +E A   ++  +E      E   H        VL +GPPG GKT LA+ V
Sbjct: 177 PRVTWEDIGDLEEAKQKIRELVELPLKHPELFRHLGIEPPKGVLLIGPPGTGKTLLAKAV 236

Query: 75  ARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DVLFIDEIHRLSIIVEEI 124
           A E    F S +GP I     G+  A L  + D        ++FIDEI  ++   EE+
Sbjct: 237 ANEADAYFVSINGPEIVSKYYGESEARLREIFDEAKRNAPAIIFIDEIDSIAPKREEV 294



 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT LA+ VA E G NF +  GP I
Sbjct: 495 ILLFGPPGTGKTLLAKAVANESGANFIAVRGPEI 528


>gi|42528086|ref|NP_973184.1| DNA polymerase III subunits gamma and tau [Treponema denticola ATCC
           35405]
 gi|41819131|gb|AAS13103.1| DNA polymerase III, gamma and tau subunits, putative [Treponema
           denticola ATCC 35405]
          Length = 612

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 99/231 (42%), Gaps = 31/231 (13%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+  E+  GQ    + L+  IEA K     + H  LF GP G GKT+ A+++A+ L   
Sbjct: 11  RPQRFEDLLGQEFVAATLQKSIEAGK-----IAHAYLFSGPRGCGKTSSARILAKVLNC- 64

Query: 82  FRSTSGPVIAKAGDLAAL--LTNLEDRDVLFIDEIHRLSI-----IVEEILYPAMEDFQL 134
                GP     G   +   +T     DV+ ID     S+     I +EIL+P   +   
Sbjct: 65  ---AEGPRPTPCGHCTSCEEITAGSCLDVIEIDGASNTSVNDVRQIKDEILFPPNSNRYK 121

Query: 135 DLMVGE----GPSA-----RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF--Y 183
             ++ E      SA     ++++        I ATT +  +   ++ R     + NF   
Sbjct: 122 IYIIDEVHMLSTSAFNALLKTIEEPPPYVVFIFATTEIHKVPATIKSRCQ---QFNFKLV 178

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
            IE LK  +   A   G++  DEA   IA  + G+ R A  L  +V  F++
Sbjct: 179 SIEILKQALADAAAELGISADDEALYWIAREATGSVRDAYTLFDQVAAFSD 229


>gi|15613820|ref|NP_242123.1| recombination factor protein RarA [Bacillus halodurans C-125]
 gi|10173873|dbj|BAB04976.1| BH1257 [Bacillus halodurans C-125]
          Length = 428

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 55/111 (49%), Gaps = 5/111 (4%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  ++E  GQ       K+      A    L  ++  GPPG+GKT++AQ +A     +
Sbjct: 10  MRPSNIDEVIGQQHLVGEGKIIRRMVDAGQ--LSSMILYGPPGVGKTSIAQAIAGSTDTH 67

Query: 82  FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           ++  +  V+    D+  ++    +  + +L +DE+HRL    ++ L P +E
Sbjct: 68  YKLLNA-VVNNKKDMEIVVEEAKMSGQLILILDEVHRLDKGKQDFLLPHLE 117


>gi|163784255|ref|ZP_02179175.1| Lon protease [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880478|gb|EDP74062.1| Lon protease [Hydrogenivirga sp. 128-5-R1-1]
          Length = 727

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 77/174 (44%), Gaps = 37/174 (21%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           + FVGPPG+GKT+L + +AR LG  F R   G V  +A              G +   L 
Sbjct: 335 LCFVGPPGVGKTSLGKSIARALGRKFTRIALGGVRDEAEIRGHRRTYVGAMPGRIIQALK 394

Query: 102 NLEDRD-VLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152
            +  ++ V+ +DE+ +L        +  + E+L P      +DL +G       V  NLS
Sbjct: 395 QVGTKNPVIMLDEVDKLASDFRGDPASALLEVLDPEQNKEFVDLYLG-------VPFNLS 447

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED-----LKTIVQRGAKLTGL 201
               I    R+  +  PL DR  + IR+  Y  E+      K ++ +  K TGL
Sbjct: 448 EVMFICTANRIDTIPRPLLDRMEV-IRIPGYSEEEKLHIAKKYLIPKQLKETGL 500


>gi|15897351|ref|NP_341956.1| AAA ATPase family protein [Sulfolobus solfataricus P2]
 gi|13813572|gb|AAK40746.1| AAA family ATPase [Sulfolobus solfataricus P2]
          Length = 769

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 59/136 (43%), Gaps = 17/136 (12%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACS-NLKVFIEAAKARAEALDH-------- 56
           G  S  + QE    S   P+   E  G +E     ++  +E      E   H        
Sbjct: 178 GRTSLEIRQEPVKESAAVPKVTWEDIGDLEDVKEKIREIVELPMRHPEVFQHLGIEPPKG 237

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GD----LAALLTNLEDRD--V 108
           VL  GPPG+GKT LA+ +A E+G  F S +GP I     G+    L  +    E     +
Sbjct: 238 VLLYGPPGVGKTLLARALANEIGAYFTSINGPEIMSKFYGESEQRLREIFEEAEKNSPAI 297

Query: 109 LFIDEIHRLSIIVEEI 124
           +FIDEI  ++   EE+
Sbjct: 298 IFIDEIDAIAPKREEV 313



 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT LA+ VA E G NF +  GP I
Sbjct: 513 ILLFGPPGTGKTMLAKAVATESGANFIAVRGPEI 546


>gi|15669345|ref|NP_248150.1| cell division protein CDC48 [Methanocaldococcus jannaschii DSM
           2661]
 gi|2492505|sp|Q58556|Y1156_METJA RecName: Full=Cell division cycle protein 48 homolog MJ1156
 gi|1591785|gb|AAB99153.1| cell division control protein 48 (cdc48), AAA family
           [Methanocaldococcus jannaschii DSM 2661]
          Length = 903

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 48/109 (44%), Gaps = 16/109 (14%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
           T E+  G  E    ++  IE      E  +         VL VGPPG GKT LA+ VA E
Sbjct: 177 TYEDIGGLKEEVKKVREMIELPMRHPELFEKLGIEPPKGVLLVGPPGTGKTLLAKAVANE 236

Query: 78  LGVNFRSTSGPVIAKA------GDLAALLTNLEDR--DVLFIDEIHRLS 118
            G NF   +GP I          +L  +    E+    ++FIDEI  ++
Sbjct: 237 AGANFYVINGPEIMSKYVGETEENLRKIFEEAEENAPSIIFIDEIDAIA 285



 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 21/34 (61%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL  GPPG GKT LA+ VA E G NF S  GP I
Sbjct: 489 VLLFGPPGTGKTLLAKAVANESGANFISVKGPEI 522


>gi|242081425|ref|XP_002445481.1| hypothetical protein SORBIDRAFT_07g020190 [Sorghum bicolor]
 gi|241941831|gb|EES14976.1| hypothetical protein SORBIDRAFT_07g020190 [Sorghum bicolor]
          Length = 792

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 8/71 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDR------DV 108
           VLF GPPG GKT LA+ +A+E   NF S  GP  +    G+  + + +L D+       +
Sbjct: 521 VLFYGPPGCGKTMLAKAIAKECKANFISVKGPELLTMWYGESESNVRDLFDKARSAAPSI 580

Query: 109 LFIDEIHRLSI 119
           LF DE+  +++
Sbjct: 581 LFFDELDSIAV 591



 Score = 43.1 bits (100), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL-EDRD-----V 108
           +L  GPPG GKT LA+ +A E G +F   +GP I    AG   A L N+ ED +     +
Sbjct: 247 ILLYGPPGTGKTLLARAIASESGAHFLVVNGPEIMSMMAGQSEANLRNVFEDAEKSAPSI 306

Query: 109 LFIDEI 114
           +F+DEI
Sbjct: 307 IFMDEI 312


>gi|242373927|ref|ZP_04819501.1| crossover junction endodeoxyribonuclease ATPase [Staphylococcus
           epidermidis M23864:W1]
 gi|242348481|gb|EES40083.1| crossover junction endodeoxyribonuclease ATPase [Staphylococcus
           epidermidis M23864:W1]
          Length = 422

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 63/133 (47%), Gaps = 6/133 (4%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           S +RP  ++E   Q        +       +   L  ++F GPPG+GKT++A+ ++    
Sbjct: 8   SRMRPMNIDEIISQQHLVGPKGIIRRMVDTKR--LSSMIFYGPPGIGKTSIAKAISGSTQ 65

Query: 80  VNFRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
             FR  +  V     D+  ++    +  + +L +DEIHRL    ++ L P +E+ ++ ++
Sbjct: 66  FKFRQLNA-VTNTKKDMQMVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKI-VL 123

Query: 138 VGEGPSARSVKIN 150
           +G   S     IN
Sbjct: 124 IGATTSNPYHAIN 136


>gi|123469082|ref|XP_001317755.1| spermatogenesis associated factor [Trichomonas vaginalis G3]
 gi|121900497|gb|EAY05532.1| spermatogenesis associated factor, putative [Trichomonas vaginalis
           G3]
          Length = 796

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 37/69 (53%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ VA E   NF S  GP +     G+  + + N+ D+       V
Sbjct: 509 VLFYGPPGCGKTLLAKAVASECSANFISIKGPELLSMWVGESESNVRNVFDKARQAAPCV 568

Query: 109 LFIDEIHRL 117
           LF DE+  L
Sbjct: 569 LFFDELDSL 577



 Score = 40.4 bits (93), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLEDR--DV 108
           +L  GPPG GK+ +A+ +A E G  F   +GP I         G+L ++    ++    +
Sbjct: 236 ILLYGPPGCGKSLIARAIANETGAAFYLINGPEIMSKMSGESEGNLRSIFEKAQETSPSI 295

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 296 IFIDEIDSVA 305


>gi|323353571|ref|ZP_08088104.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
           VMC66]
 gi|322121517|gb|EFX93280.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
           VMC66]
          Length = 422

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  +++  GQ       K+     +A    L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPTDIDQIIGQQHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTKYA 66

Query: 82  FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +  V +K       + A     L    VL +DEIHRL    ++ L P +E   L +
Sbjct: 67  FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121

Query: 137 MVG 139
           M+G
Sbjct: 122 MIG 124


>gi|212542167|ref|XP_002151238.1| AAA family ATPase, putative [Penicillium marneffei ATCC 18224]
 gi|210066145|gb|EEA20238.1| AAA family ATPase, putative [Penicillium marneffei ATCC 18224]
          Length = 534

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 73/150 (48%), Gaps = 22/150 (14%)

Query: 22  LRPRTLEEFTGQVEACSN--LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +RP++L+E  GQ     N  L+  IE  +     +  ++  G  G GKTT+A+V+A  +G
Sbjct: 129 MRPKSLDEVCGQDLVGPNGILRSLIEQDR-----VPSMILWGGAGTGKTTIARVIACMVG 183

Query: 80  VNF----RSTSGPVIAKAGDLAALLTN----LEDRDVLFIDEIHRLSIIVEEILYPAMED 131
             F     +TSG  IA+   + A   N       + +LF DEIHR S   +++L   +E 
Sbjct: 184 SRFVEINSTTSG--IAECKKIFAEARNELGLTGRKTILFCDEIHRFSKTQQDVLLGPVES 241

Query: 132 FQLDLMVG--EGPSARSVKINLSR---FTL 156
             + L+    E PS +     LSR   FTL
Sbjct: 242 GVVTLIAATTENPSFKVQNALLSRCRTFTL 271


>gi|119945376|ref|YP_943056.1| recombination factor protein RarA [Psychromonas ingrahamii 37]
 gi|119863980|gb|ABM03457.1| Recombination protein MgsA [Psychromonas ingrahamii 37]
          Length = 442

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 64/139 (46%), Gaps = 18/139 (12%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH-----VLFVGPPGLGKTTLAQVVAR 76
           +RP+    + GQ          I A K    AL++     ++  GPPG GKTTLA+++A 
Sbjct: 18  MRPKFFSNYIGQAH-------IIGAGKPLRNALENGAAHSMILWGPPGTGKTTLAELIAS 70

Query: 77  ELGVNFRS----TSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
               +       TSG   I  A ++A        R +LF+DE+HR +   ++   P +ED
Sbjct: 71  YCDAHVERLSAVTSGIKEIRAAIEIAQQNRTNGIRTLLFVDEVHRFNKAQQDAFLPYIED 130

Query: 132 FQLDLMVGEGPSARSVKIN 150
             + L +G      S ++N
Sbjct: 131 GTI-LFIGATTENPSFELN 148


>gi|57012999|sp|Q5UZE5|RFCS_HALMA RecName: Full=Replication factor C small subunit; Short=RFC small
          subunit; AltName: Full=Clamp loader small subunit
          Length = 325

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 6/71 (8%)

Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
          +E+  I   RP+TL++  G       LK ++         L H+LF GP G GKTT A  
Sbjct: 12 REEVWIEKYRPQTLDDVMGHENIVGRLKSYVSRND-----LSHMLFSGPAGTGKTTCATA 66

Query: 74 VAREL-GVNFR 83
          +AREL G ++R
Sbjct: 67 IARELYGDDWR 77


>gi|289192266|ref|YP_003458207.1| AAA family ATPase, CDC48 subfamily [Methanocaldococcus sp.
           FS406-22]
 gi|288938716|gb|ADC69471.1| AAA family ATPase, CDC48 subfamily [Methanocaldococcus sp.
           FS406-22]
          Length = 903

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 48/109 (44%), Gaps = 16/109 (14%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
           T E+  G  E    ++  IE      E  +         VL VGPPG GKT LA+ VA E
Sbjct: 177 TYEDIGGLKEEVKKVREMIELPMRHPELFEKLGIEPPKGVLLVGPPGTGKTLLAKAVANE 236

Query: 78  LGVNFRSTSGPVIAKA------GDLAALLTNLEDR--DVLFIDEIHRLS 118
            G NF   +GP I          +L  +    E+    ++FIDEI  ++
Sbjct: 237 AGANFYVINGPEIMSKYVGETEENLRKIFEEAEENAPSIIFIDEIDAIA 285



 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 21/34 (61%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL  GPPG GKT LA+ VA E G NF S  GP I
Sbjct: 489 VLLFGPPGTGKTLLAKAVANESGANFISVKGPEI 522


>gi|289581577|ref|YP_003480043.1| Replication factor C [Natrialba magadii ATCC 43099]
 gi|289531130|gb|ADD05481.1| Replication factor C [Natrialba magadii ATCC 43099]
          Length = 341

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 66/170 (38%), Gaps = 35/170 (20%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE- 77
           I   RP  L+E  G       L+ ++E      + L H++F GP G GKTT AQ +ARE 
Sbjct: 32  IEKYRPEYLDEIKGHENIVPRLQRYVEQ-----DDLPHLMFAGPAGTGKTTAAQAIAREV 86

Query: 78  ---------LGVNFRSTSGPVIAKA--GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
                    L +N     G  + +    D A       D  ++F+DE   L+   +  L 
Sbjct: 87  YDDDWRENFLELNASDQRGIDVVRDRIKDFARASFGGYDHRIIFLDEADALTSDAQSALR 146

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
             ME F                 N +RF L  +      + +P+Q R  +
Sbjct: 147 RTMEQFS----------------NNTRFIL--SCNYSSQIIDPIQSRCAV 178


>gi|328719677|ref|XP_001952578.2| PREDICTED: katanin p60 ATPase-containing subunit A1-like
           [Acyrthosiphon pisum]
          Length = 474

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 61/128 (47%), Gaps = 10/128 (7%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108
           VL VGPPG GKT LA+ VA E G  F + S   +     G+   L      +  +     
Sbjct: 229 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTMTSKYRGESEKLVRLLFEMAKIHSPST 288

Query: 109 LFIDEIHRL-SIIVEEILYPAMEDFQLDLMVG-EGPSARSVKINLSRFTLIAATTRVGLL 166
           +FIDE+  L S+   E  + A   F+ +L++  +G ++ S + N     ++AAT     +
Sbjct: 289 IFIDEVDSLCSLRGSEGEHEASRRFKAELLIHMDGLNSSSDEENNQSIMVLAATNHPWDI 348

Query: 167 TNPLQDRF 174
            +  + RF
Sbjct: 349 DDAFRRRF 356


>gi|284173309|ref|ZP_06387278.1| AAA ATPase family protein [Sulfolobus solfataricus 98/2]
 gi|261602026|gb|ACX91629.1| AAA family ATPase, CDC48 subfamily [Sulfolobus solfataricus 98/2]
          Length = 759

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 59/136 (43%), Gaps = 17/136 (12%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACS-NLKVFIEAAKARAEALDH-------- 56
           G  S  + QE    S   P+   E  G +E     ++  +E      E   H        
Sbjct: 168 GRTSLEIRQEPVKESAAVPKVTWEDIGDLEDVKEKIREIVELPMRHPEVFQHLGIEPPKG 227

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GD----LAALLTNLEDRD--V 108
           VL  GPPG+GKT LA+ +A E+G  F S +GP I     G+    L  +    E     +
Sbjct: 228 VLLYGPPGVGKTLLARALANEIGAYFTSINGPEIMSKFYGESEQRLREIFEEAEKNSPAI 287

Query: 109 LFIDEIHRLSIIVEEI 124
           +FIDEI  ++   EE+
Sbjct: 288 IFIDEIDAIAPKREEV 303



 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT LA+ VA E G NF +  GP I
Sbjct: 503 ILLFGPPGTGKTMLAKAVATESGANFIAVRGPEI 536


>gi|268317253|ref|YP_003290972.1| ATP-dependent protease La [Rhodothermus marinus DSM 4252]
 gi|262334787|gb|ACY48584.1| ATP-dependent protease La [Rhodothermus marinus DSM 4252]
          Length = 840

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 81/192 (42%), Gaps = 48/192 (25%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA---GDLAALLTNLEDR------ 106
           + FVGPPG+GKT+L + +AR LG  F R + G V  +A   G     +  L  R      
Sbjct: 386 LCFVGPPGVGKTSLGKSIARALGRKFVRVSLGGVRDEAEIRGHRRTYVGALPGRIIQGIK 445

Query: 107 ------DVLFIDEIHRL--------SIIVEEILYP----AMEDFQLDLMVGEGPSARSVK 148
                  V  +DEI +L        +  + E+L P    A  D  L+L           +
Sbjct: 446 KAGTSNPVFMLDEIDKLGADFRGDPASALLEVLDPEQNYAFSDHYLEL-----------E 494

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL---------KTIVQRGAKLT 199
            +LSR   IA    + L+  PL+DR  I     + + E L         + + Q G K  
Sbjct: 495 YDLSRVLFIATANYLDLIPAPLRDRMEIIEISGYTQDEKLQIAKRYLVPRQVEQHGLKPE 554

Query: 200 GLAVTDEAACEI 211
             ++TDEA  EI
Sbjct: 555 QFSITDEALREI 566


>gi|150401347|ref|YP_001325113.1| AAA family ATPase, CDC48 subfamily protein [Methanococcus aeolicus
           Nankai-3]
 gi|150014050|gb|ABR56501.1| AAA family ATPase, CDC48 subfamily [Methanococcus aeolicus
           Nankai-3]
          Length = 723

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLEDR--DV 108
           VL  GPPG GKT LA+ VA E G NF + +GP I          +L  +  + E+    +
Sbjct: 213 VLLAGPPGTGKTLLAKAVANEAGANFYTINGPEIMSKYVGETEENLRKIFEDAEEEAPSI 272

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 273 IFIDEIDSVA 282



 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 20/34 (58%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL  GPPG GKT LA+ VA E   NF S  GP I
Sbjct: 485 VLLFGPPGTGKTMLAKAVANESQANFISVKGPEI 518


>gi|262283467|ref|ZP_06061233.1| recombination factor protein RarA [Streptococcus sp. 2_1_36FAA]
 gi|262260958|gb|EEY79658.1| recombination factor protein RarA [Streptococcus sp. 2_1_36FAA]
          Length = 422

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  +++  GQ       K+     +A    L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPSDIDQIIGQQHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTKFA 66

Query: 82  FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +  V +K       + A     L    VL +DEIHRL    ++ L P +E   L +
Sbjct: 67  FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121

Query: 137 MVG 139
           M+G
Sbjct: 122 MIG 124


>gi|167383517|ref|XP_001736564.1| transitional endoplasmic reticulum ATPase [Entamoeba dispar SAW760]
 gi|165900980|gb|EDR27180.1| transitional endoplasmic reticulum ATPase, putative [Entamoeba
           dispar SAW760]
          Length = 804

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT +A+ VA E   NF S  GP +     G+  A + N+ D+       V
Sbjct: 511 VLFYGPPGCGKTMMAKAVANECQANFISVKGPELLTMWFGESEANVRNIFDKARGAAPCV 570

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 571 LFFDELDSIA 580



 Score = 38.1 bits (87), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ +A E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 238 ILLYGPPGCGKTMIARAIANETGAFFFLINGPEIMSKMAGESESNLRRAFEEAEKNSPAI 297

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 298 IFIDEIDSIA 307


>gi|156553266|ref|XP_001599519.1| PREDICTED: similar to werner helicase interacting protein [Nasonia
           vitripennis]
          Length = 462

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 65/140 (46%), Gaps = 23/140 (16%)

Query: 22  LRPRTLEEFTGQVEACSNL---KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE- 77
           +RP  L ++ GQ    S+L   K  +       E    +L+ GPPG GKT+L  V+ +E 
Sbjct: 73  MRPNELSDYVGQ----SHLIGPKTLLHDLLRNGEIPSMILW-GPPGCGKTSLVNVIMQES 127

Query: 78  -----LGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILY 126
                + V F   S    +   D+   +T  E+      R V+F+DEIHR + + ++I  
Sbjct: 128 KKLSDIPVKFIKLSA-TTSSINDVRKAVTEAENQAKQGRRTVVFMDEIHRFNKLQQDIFL 186

Query: 127 PAME--DFQLDLMVGEGPSA 144
           P +E   F L     E PS+
Sbjct: 187 PHVEAGTFILIGATTENPSS 206


>gi|151944326|gb|EDN62604.1| protein with DNA-dependent ATPase and ssDNA annealing activities
           involved in maintenance of genome [Saccharomyces
           cerevisiae YJM789]
          Length = 587

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 69/148 (46%), Gaps = 23/148 (15%)

Query: 22  LRPRTLEEFTGQVEACS--NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           LRP+ L ++ GQ    S  N  +F    +     +  ++  GPPG+GKT+LA+++ +   
Sbjct: 139 LRPKELRDYVGQQHILSQDNGTLFKYIKQG---TIPSMILWGPPGVGKTSLARLLTKTAT 195

Query: 80  VN----------FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVE 122
            +          F   +    A   +L  +    +        R VLFIDEIHR + + +
Sbjct: 196 TSSNESNVGSRYFMIETSATKANTQELRGIFEKSKKEYQLTKRRTVLFIDEIHRFNKVQQ 255

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKIN 150
           ++L P +E+  + +++G      S ++N
Sbjct: 256 DLLLPHVENGDI-ILIGATTENPSFQLN 282


>gi|292654383|ref|YP_003534280.1| replication factor C small subunit [Haloferax volcanii DS2]
 gi|291370302|gb|ADE02529.1| replication factor C small subunit [Haloferax volcanii DS2]
          Length = 327

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 17/126 (13%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           I   RP+T ++  GQ +    L+ +IE      + L H+LF GP G+GKTT A  +AR +
Sbjct: 18  IEKYRPQTFDDVYGQDDIVERLRSYIER-----DDLPHLLFAGPAGVGKTTSATAIARAI 72

Query: 79  -GVNFRSTSGPVIA-----------KAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
            G ++R     + A           +  + A       D  V+F+DE   L+   +  L 
Sbjct: 73  YGDDWRGNFLELNASDERGIDVVRDRIKNFARSSFGGHDYRVIFLDEADSLTNDAQSALR 132

Query: 127 PAMEDF 132
             ME F
Sbjct: 133 RTMEQF 138


>gi|242769588|ref|XP_002341796.1| AAA family ATPase, putative [Talaromyces stipitatus ATCC 10500]
 gi|218724992|gb|EED24409.1| AAA family ATPase, putative [Talaromyces stipitatus ATCC 10500]
          Length = 528

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 70/150 (46%), Gaps = 30/150 (20%)

Query: 22  LRPRTLEEFTGQVEACSN--LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +RP++L+E  GQ     N  L+  IE  +              P  GKTT+A+V+A  +G
Sbjct: 131 MRPKSLDEVCGQDLVGPNGILRSLIEQDRV-------------PSTGKTTIARVIASMVG 177

Query: 80  VNF----RSTSGPVIAKAGDLAALLTN----LEDRDVLFIDEIHRLSIIVEEILYPAMED 131
             F     +TSG  IA+   + A   N    +  R +LF DEIHR S   +++L   +E 
Sbjct: 178 SRFVEINSTTSG--IAECKKIFAEARNELGLMGRRTILFCDEIHRFSKTQQDVLLGPVES 235

Query: 132 FQLDLMVG--EGPSARSVKINLSR---FTL 156
             + L+    E PS +     LSR   FTL
Sbjct: 236 GVVTLIAATTENPSFKVQNALLSRCRTFTL 265


>gi|149908481|ref|ZP_01897144.1| putative ATPase protein [Moritella sp. PE36]
 gi|149808644|gb|EDM68579.1| putative ATPase protein [Moritella sp. PE36]
          Length = 444

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 9/116 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  + ++ GQ       K    A  A   A   +L+ GPPG GKTT+A+++A      
Sbjct: 20  MRPEKMSQYIGQTHILGEGKPLHRALLA-GHAHSMILW-GPPGTGKTTIAEMIAHYCDAK 77

Query: 82  FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMED 131
                  V +   D+   +   +D      R +LF+DE+HR +   ++   P +ED
Sbjct: 78  VERVHA-VTSGIKDIRLAIEKAKDNAIQGFRTILFVDEVHRFNKSQQDAFLPHIED 132


>gi|55379214|ref|YP_137064.1| replication factor C small subunit [Haloarcula marismortui ATCC
          43049]
 gi|55231939|gb|AAV47358.1| replication factor C small subunit [Haloarcula marismortui ATCC
          43049]
          Length = 345

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 6/71 (8%)

Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
          +E+  I   RP+TL++  G       LK ++         L H+LF GP G GKTT A  
Sbjct: 32 REEVWIEKYRPQTLDDVMGHENIVGRLKSYVSRND-----LSHMLFSGPAGTGKTTCATA 86

Query: 74 VAREL-GVNFR 83
          +AREL G ++R
Sbjct: 87 IARELYGDDWR 97


>gi|11498884|ref|NP_070113.1| cell division protein CDC48 [Archaeoglobus fulgidus DSM 4304]
 gi|2649294|gb|AAB89960.1| cell division control protein, AAA family, putative [Archaeoglobus
           fulgidus DSM 4304]
          Length = 352

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 80/183 (43%), Gaps = 22/183 (12%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIE----AAKARAEALDHVLFVGPPGLGKTTLAQV 73
           +  ++R  TL++  GQ EA    KV +E      K    A  +VLF GPPG GKT +A+ 
Sbjct: 95  ETEIVRDITLDDVVGQEEAKRKAKVILEYLRNPEKFGKWAPKNVLFYGPPGTGKTMMAKA 154

Query: 74  VARELGVNFRSTSGPVI--AKAGDLAALLTNLEDRD------VLFIDEIHRLSII--VEE 123
           ++ E    F S     +     GD A  +  L +R       ++F+DE   +++    +E
Sbjct: 155 LSNEAKTPFLSVKSTKLIGEHVGDGARRVHELYERARQLAPCIVFLDEFDAIALDRGYQE 214

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRF--GIPIRLN 181
           I     E     L   +G ++            IAAT RV LL   ++ RF   I  RL 
Sbjct: 215 IRGDVSEIVNALLTELDGTNSN------EGICTIAATNRVELLDASIRSRFEEEIEFRLP 268

Query: 182 FYE 184
            YE
Sbjct: 269 SYE 271


>gi|6324111|ref|NP_014181.1| Mgs1p [Saccharomyces cerevisiae S288c]
 gi|1730822|sp|P40151|WRIP1_YEAST RecName: Full=DNA-dependent ATPase MGS1; AltName: Full=Maintenance
           of genome stability protein 1
 gi|1302233|emb|CAA96121.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|51013831|gb|AAT93209.1| YNL218W [Saccharomyces cerevisiae]
 gi|190409192|gb|EDV12457.1| DNA-dependent ATPase MGS1 [Saccharomyces cerevisiae RM11-1a]
 gi|207341862|gb|EDZ69804.1| YNL218Wp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|256272347|gb|EEU07330.1| Mgs1p [Saccharomyces cerevisiae JAY291]
 gi|259149146|emb|CAY82388.1| Mgs1p [Saccharomyces cerevisiae EC1118]
 gi|285814444|tpg|DAA10338.1| TPA: Mgs1p [Saccharomyces cerevisiae S288c]
 gi|323307497|gb|EGA60768.1| Mgs1p [Saccharomyces cerevisiae FostersO]
 gi|323346818|gb|EGA81097.1| Mgs1p [Saccharomyces cerevisiae Lalvin QA23]
 gi|323352874|gb|EGA85176.1| Mgs1p [Saccharomyces cerevisiae VL3]
          Length = 587

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 69/148 (46%), Gaps = 23/148 (15%)

Query: 22  LRPRTLEEFTGQVEACS--NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           LRP+ L ++ GQ    S  N  +F    +     +  ++  GPPG+GKT+LA+++ +   
Sbjct: 139 LRPKELRDYVGQQHILSQDNGTLFKYIKQG---TIPSMILWGPPGVGKTSLARLLTKTAT 195

Query: 80  VN----------FRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVE 122
            +          F   +    A   +L  +    +        R VLFIDEIHR + + +
Sbjct: 196 TSSNESNVGSRYFMIETSATKANTQELRGIFEKSKKEYQLTKRRTVLFIDEIHRFNKVQQ 255

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKIN 150
           ++L P +E+  + +++G      S ++N
Sbjct: 256 DLLLPHVENGDI-ILIGATTENPSFQLN 282


>gi|302676826|ref|XP_003028096.1| hypothetical protein SCHCODRAFT_70373 [Schizophyllum commune H4-8]
 gi|300101784|gb|EFI93193.1| hypothetical protein SCHCODRAFT_70373 [Schizophyllum commune H4-8]
          Length = 925

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 73/163 (44%), Gaps = 33/163 (20%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTS-GPV-------------IAKAGDL--AALL 100
           +LFVGPPG GKT+L Q VAR L + F+  S G V             +A A  L   AL 
Sbjct: 428 LLFVGPPGTGKTSLGQSVARALDLPFQRISLGGVRDEAEIRGHRRTYVASAPGLIVQALR 487

Query: 101 TNLEDRDVLFIDEIHRL---------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINL 151
                  V+ +DE+ +L         S  + E+L P       D  +       SV ++L
Sbjct: 488 KAGRPDFVMLLDEVDKLGASNFHGDPSAALLEVLDPEQNHSFNDHYL-------SVPVDL 540

Query: 152 SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           SR   I     +  ++ PL DR  + +RL+ Y  ++  +I +R
Sbjct: 541 SRVLFILTANSLDTMSGPLLDRCEV-VRLSGYTYDEKMSIARR 582


>gi|15605788|ref|NP_213165.1| Lon protease [Aquifex aeolicus VF5]
 gi|3913992|sp|O66605|LON_AQUAE RecName: Full=Lon protease; AltName: Full=ATP-dependent protease La
 gi|2982953|gb|AAC06568.1| Lon protease [Aquifex aeolicus VF5]
          Length = 795

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 99/256 (38%), Gaps = 62/256 (24%)

Query: 59  FVGPPGLGKTTLAQVVARELGVNF------------------RSTSGPVIAKAGDLAALL 100
           FVGPPG+GKT+L + +A  LG  F                  R+  G +  +   + A+ 
Sbjct: 368 FVGPPGVGKTSLGRSIAEALGRKFVRIALGGIRDEAEIRGHRRTYVGAMPGRI--IQAIK 425

Query: 101 TNLEDRDVLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLS 152
                  V+ +DEI +L+I  +        E+L P       DL +G       +  +LS
Sbjct: 426 QAGTKNPVIMLDEIDKLAISFQGDPAAALLEVLDPEQNKKFTDLYIG-------IPFDLS 478

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL----KTIVQRGAKLTGLA-----V 203
               I    R   +  PL DR  + +   + E E L    K ++ +   L G +      
Sbjct: 479 EVIFICTGNRADTIPTPLLDRMELIMLSGYSEEEKLFIAKKHLIPKLIPLHGFSPEEIEF 538

Query: 204 TDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQL 263
           TDEA  EI                 +R +   A  + + R+I+ A L ++A+ K+  ++ 
Sbjct: 539 TDEAILEI-----------------IRGYTREAGVRNLQRQIS-AVLRKIAVKKLQGEKG 580

Query: 264 DLRYLTMIARNFGGGP 279
                  + R   G P
Sbjct: 581 PFNITPELVRKLLGVP 596


>gi|224113871|ref|XP_002316599.1| predicted protein [Populus trichocarpa]
 gi|222859664|gb|EEE97211.1| predicted protein [Populus trichocarpa]
          Length = 553

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 74/165 (44%), Gaps = 28/165 (16%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           +  +S ++     +RPRT+++  GQ    S   +   A   R   +  ++  GPPG GKT
Sbjct: 119 NHTISNDEPLAERMRPRTIDDVIGQDLLLSQNSLLRSAI--RCSRIPSIILWGPPGTGKT 176

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-----------------RDVLFI 111
           ++A+ +     V   ++ G    +   L+A+   ++D                 R VLF+
Sbjct: 177 SIARAI-----VTSANSQGSSSYRFVSLSAVTCGVKDARDAFEDARKFKLKNSKRTVLFL 231

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVG---EGPSARSVKINLSR 153
           DE+HR +   ++   P +ED  + + +G   E PS   V   LSR
Sbjct: 232 DEVHRFNKSQQDSFLPVIEDGTI-VFIGATTENPSFHLVTPLLSR 275


>gi|328945355|gb|EGG39508.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
           SK1087]
          Length = 422

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  +++  GQ       K+     +A    L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPTDIDQIIGQQHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTKYA 66

Query: 82  FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +  V +K       + A     L    VL +DEIHRL    ++ L P +E   L +
Sbjct: 67  FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121

Query: 137 MVG 139
           M+G
Sbjct: 122 MIG 124


>gi|325180218|emb|CCA14621.1| conserved hypothetical protein [Albugo laibachii Nc14]
          Length = 603

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 5/99 (5%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEA-AKARAEALDH---VLFVGPPGLGKTTLAQVVARELG 79
           P T+ +   Q    + L  ++E  A+ R + +     ++  GPPG GK+TL Q +AR LG
Sbjct: 121 PATISKLCVQKRKYNQLYRWVEENAQIRGKCMQRKRLMILSGPPGCGKSTLVQCIARTLG 180

Query: 80  VNFRS-TSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           VN R     P   K G+ A  + + E+     ++E  R 
Sbjct: 181 VNVRKWKESPNFYKNGNHALPIYSFENSFTTPMEEFTRF 219


>gi|50365487|ref|YP_053912.1| cell division protein [Mesoplasma florum L1]
 gi|81391677|sp|Q6F0E5|FTSH_MESFL RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|50364043|gb|AAT76028.1| cell division protein [Mesoplasma florum L1]
          Length = 650

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 42/83 (50%), Gaps = 1/83 (1%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQ-VEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           G+       E +D+       +EE   + VE    LK   + A+A A A   VL  GPPG
Sbjct: 161 GMGKNRARAEKSDVKFANVAGIEEEKSELVELVDYLKFPAKYAEAGARAPKGVLMEGPPG 220

Query: 65  LGKTTLAQVVARELGVNFRSTSG 87
            GKT LA+ VA E GV+F S +G
Sbjct: 221 TGKTLLAKAVAGEAGVSFFSIAG 243


>gi|125717113|ref|YP_001034246.1| recombination factor protein RarA [Streptococcus sanguinis SK36]
 gi|125497030|gb|ABN43696.1| Chromosome segregation helicase, putative [Streptococcus sanguinis
           SK36]
 gi|325697800|gb|EGD39684.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
           SK160]
          Length = 422

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  +++  GQ       K+     +A    L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPTDIDQIIGQQHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTKFA 66

Query: 82  FRSTSGPVIAK-----AGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +  V +K       + A     L    VL +DEIHRL    ++ L P +E   L +
Sbjct: 67  FRTFNATVDSKKRLQEVAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121

Query: 137 MVG 139
           M+G
Sbjct: 122 MIG 124


>gi|67484218|ref|XP_657329.1| cell division cycle protein 48 [Entamoeba histolytica HM-1:IMSS]
 gi|56474515|gb|EAL51880.1| cell division cycle protein 48, putative [Entamoeba histolytica
           HM-1:IMSS]
          Length = 794

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT +A+ VA E   NF S  GP +     G+  A + N+ D+       V
Sbjct: 502 VLFYGPPGCGKTMMAKAVANECQANFISVKGPELLTMWFGESEANVRNIFDKARGAAPCV 561

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 562 LFFDELDSIA 571



 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ +A E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 229 ILLYGPPGCGKTMIARAIANETGAFFFLINGPEIMSKMAGESESNLRRAFEEAEKNSPAI 288

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 289 IFIDEIDSIA 298


>gi|324992260|gb|EGC24182.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
           SK405]
 gi|325688550|gb|EGD30567.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
           SK72]
          Length = 422

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  +++  GQ       K+     +A    L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPTDIDQIIGQQHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTKYA 66

Query: 82  FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +  V +K       + A     L    VL +DEIHRL    ++ L P +E   L +
Sbjct: 67  FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121

Query: 137 MVG 139
           M+G
Sbjct: 122 MIG 124


>gi|217970180|ref|YP_002355414.1| recombination factor protein RarA [Thauera sp. MZ1T]
 gi|217507507|gb|ACK54518.1| AAA ATPase central domain protein [Thauera sp. MZ1T]
          Length = 474

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 7/114 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP TL+E  GQ       K    A ++R      ++  GPPG+GKTTLA+++AR     
Sbjct: 19  MRPHTLDEVAGQSHLLGPGKPLRLAFESRRP--HSMILWGPPGVGKTTLARLMARGFDAE 76

Query: 82  FRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           F + S        I +A   A          +LF+DE+HR +   ++   P +E
Sbjct: 77  FVALSAVFSGVKEIREAIQQAQAAKARGRHTILFVDEVHRFNKAQQDAFLPYVE 130


>gi|158320717|ref|YP_001513224.1| recombination factor protein RarA [Alkaliphilus oremlandii OhILAs]
 gi|158140916|gb|ABW19228.1| AAA ATPase central domain protein [Alkaliphilus oremlandii OhILAs]
          Length = 420

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 54/106 (50%), Gaps = 16/106 (15%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  LE+  GQ     + K+     +++A  + +++F GP G GKTT+A ++A+     
Sbjct: 8   VRPTKLEDIVGQKHILGSGKLLNRILESKA--IPNMIFYGPSGTGKTTVANIIAQSSNKK 65

Query: 82  FRSTSGP---------VIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
           F   +G          VIA+ G L  +     +  +L+IDE+H L+
Sbjct: 66  FYKINGTNANIEDIKRVIAQIGTLHTM-----NGILLYIDELHYLN 106


>gi|325693863|gb|EGD35782.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
           SK150]
 gi|327468709|gb|EGF14188.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
           SK330]
          Length = 422

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  +++  GQ       K+     +A    L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPTDIDQIIGQQHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTKFA 66

Query: 82  FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +  V +K       + A     L    VL +DEIHRL    ++ L P +E   L +
Sbjct: 67  FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121

Query: 137 MVG 139
           M+G
Sbjct: 122 MIG 124


>gi|146303255|ref|YP_001190571.1| vesicle-fusing ATPase [Metallosphaera sedula DSM 5348]
 gi|145701505|gb|ABP94647.1| Vesicle-fusing ATPase [Metallosphaera sedula DSM 5348]
          Length = 703

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 35/71 (49%), Gaps = 8/71 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAA--------KARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           T E+  G  +    LK  +E          + RAE    V+  GPPG GKT LA+ VA E
Sbjct: 431 TWEDIIGLDQVKQELKEVVEWPLKYSKLYEEMRAEVPSGVMLYGPPGTGKTMLAKAVAHE 490

Query: 78  LGVNFRSTSGP 88
            G NF + SGP
Sbjct: 491 SGANFIAVSGP 501



 Score = 39.7 bits (91), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 19/123 (15%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPP 63
           + Q   +I L+   +LE+  G  +   +LK  I+ A  + E            VL  GPP
Sbjct: 160 IKQTQKNIPLV---SLEDVGGLTDQIMSLKEIIDIALVKPEVPRLFGFRPPKGVLLYGPP 216

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DVLFIDEIH 115
           G GKT +A+ +A  +  NF   SGP I     G+    L  + ++       ++FIDEI 
Sbjct: 217 GTGKTLIAKALANSVMANFFFISGPEIGSKYYGESEKRLREIFEQAEKSAPSMIFIDEID 276

Query: 116 RLS 118
            ++
Sbjct: 277 AIA 279


>gi|91094825|ref|XP_971125.1| PREDICTED: similar to werner helicase interacting protein
           [Tribolium castaneum]
          Length = 494

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 107/256 (41%), Gaps = 47/256 (18%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           L+P+ L++F GQ         L+  +E        + +++  GPPG GKT+L+ V+    
Sbjct: 98  LQPKCLDDFMGQSHVLGENTVLRTLLEKGD-----IPNMVLWGPPGCGKTSLSGVIQ--- 149

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED----------------RDVLFIDEIHRLSIIVE 122
           G+     S P   K   L A    ++D                R VLF+DEIHR +   +
Sbjct: 150 GI---CKSNPTKLKFVSLCAATAGVKDVQNIVSAAKLQQKFGCRTVLFMDEIHRFNKKQQ 206

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKIN---LSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +I    +E   + ++VG      S  +N   LSR  +I            + +R      
Sbjct: 207 DIFLLHVEKGDI-ILVGATTENPSFTVNSALLSRCRVIVLQKLDPDCLYQILERGA---- 261

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA-GRL---LRRVRDFAEV 235
              + +E    +V +GA+  G AV  +A   +A  S G  RIA G L   L+   D  +V
Sbjct: 262 -RNFNVE----VVDKGARSKGFAVQADALKWLADISDGDARIALGNLQLVLQYNEDKNKV 316

Query: 236 AHAKTITREIADAALL 251
              + I  +I  + LL
Sbjct: 317 VTIEDIKEKIKKSHLL 332


>gi|327459576|gb|EGF05922.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
           SK1]
 gi|332364872|gb|EGJ42641.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
           SK1059]
          Length = 422

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  +++  GQ       K+     +A    L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPTDIDQIIGQQHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTKFA 66

Query: 82  FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +  V +K       + A     L    VL +DEIHRL    ++ L P +E   L +
Sbjct: 67  FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121

Query: 137 MVG 139
           M+G
Sbjct: 122 MIG 124


>gi|87126144|gb|ABD20658.1| ATPase, AAA family [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
          Length = 391

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 2/100 (2%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLF 110
           + L  ++F GPPG+GKT++A+ ++      FR  +     K    L      +  + +L 
Sbjct: 5   KKLTSMIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKDMQLVVEEAKMSGQVILL 64

Query: 111 IDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN 150
           +DEIHRL    ++ L P +E+ ++ +++G   S     IN
Sbjct: 65  LDEIHRLDKAKQDFLLPHLENGKI-VLIGATTSNPYHAIN 103


>gi|284035353|ref|YP_003385283.1| ATPase AAA [Spirosoma linguale DSM 74]
 gi|283814646|gb|ADB36484.1| AAA ATPase central domain protein [Spirosoma linguale DSM 74]
          Length = 423

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 73/149 (48%), Gaps = 33/149 (22%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP+TL +  GQ   +     L+  ++A +     L  ++  GPPG+GKTTLA ++A   
Sbjct: 12  VRPQTLNDVIGQRKLIGPTGALRRAVDAGR-----LPSMILWGPPGVGKTTLALLLA--- 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED-RDVL-----------FIDEIHRLSIIVEEILY 126
                +   P IA    L+A+ + +++ RDVL           FIDEIHR +   ++ L 
Sbjct: 64  ----EAVKRPFIA----LSAINSGVKEIRDVLSRPSGMFPPVVFIDEIHRFNKSQQDALL 115

Query: 127 PAMEDFQLDLM--VGEGPSARSVKINLSR 153
            A+E  Q+ L+    E PS       LSR
Sbjct: 116 GAVEKGQITLIGATTENPSFEVNSALLSR 144


>gi|258411000|ref|ZP_05681280.1| recombination protein MgsA [Staphylococcus aureus A9763]
 gi|257840150|gb|EEV64614.1| recombination protein MgsA [Staphylococcus aureus A9763]
          Length = 391

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 2/100 (2%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLF 110
           + L  ++F GPPG+GKT++A+ ++      FR  +     K    L      +  + +L 
Sbjct: 5   KKLTSMIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKDMQLVVEEAKMSGQVILL 64

Query: 111 IDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN 150
           +DEIHRL    ++ L P +E+ ++ +++G   S     IN
Sbjct: 65  LDEIHRLDKAKQDFLLPHLENGKI-VLIGATTSNPYHAIN 103


>gi|255711710|ref|XP_002552138.1| KLTH0B08052p [Lachancea thermotolerans]
 gi|238933516|emb|CAR21700.1| KLTH0B08052p [Lachancea thermotolerans]
          Length = 536

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 73/161 (45%), Gaps = 29/161 (18%)

Query: 22  LRPRTLEEFTGQVEACSN----LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           LRP+ L E+ GQ    S+    L  F++        +  ++  GPPG+GKT+LA+++ + 
Sbjct: 98  LRPKELAEYVGQQHIISSEHGVLYKFVQQG-----IIPSMILWGPPGVGKTSLARLLTK- 151

Query: 78  LGVNFRSTSGPVI---------AKAGDLAALLTN------LEDR-DVLFIDEIHRLSIIV 121
             VN    +G            A A +L  +  N      L  R  V+FIDEIHR +   
Sbjct: 152 -AVNQSHANGVTYTLIQTSATKATAQELRKIFENSRREFSLTKRITVVFIDEIHRFNKGQ 210

Query: 122 EEILYPAME--DFQLDLMVGEGPSARSVKINLSRFTLIAAT 160
           +++L P +E  D  L     E PS +     +SR  +   T
Sbjct: 211 QDLLLPHVEAGDIVLIGATTENPSFQLNNALMSRCQIFVLT 251


>gi|157151477|ref|YP_001451097.1| recombination factor protein RarA [Streptococcus gordonii str.
           Challis substr. CH1]
 gi|157076271|gb|ABV10954.1| ATPase, AAA family [Streptococcus gordonii str. Challis substr.
           CH1]
          Length = 422

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  +++  GQ       K+     +A    L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPTGIDQIIGQQHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTKYA 66

Query: 82  FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +  V +K       + A     L    VL +DEIHRL    ++ L P +E   L +
Sbjct: 67  FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121

Query: 137 MVG 139
           M+G
Sbjct: 122 MIG 124


>gi|115476404|ref|NP_001061798.1| Os08g0413000 [Oryza sativa Japonica Group]
 gi|37806195|dbj|BAC99698.1| putative cell division cycle protein [Oryza sativa Japonica Group]
 gi|113623767|dbj|BAF23712.1| Os08g0413000 [Oryza sativa Japonica Group]
 gi|125603399|gb|EAZ42724.1| hypothetical protein OsJ_27296 [Oryza sativa Japonica Group]
          Length = 848

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 8/71 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT +A+ +A+E   NF S  GP +     G+    + NL D+       +
Sbjct: 526 VLFYGPPGCGKTMMAKAIAKECKANFISIKGPELLTMWFGESEGNVRNLFDKARQSAPCI 585

Query: 109 LFIDEIHRLSI 119
           LF DE+  +++
Sbjct: 586 LFFDELDSIAV 596



 Score = 38.1 bits (87), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT LA+ +A E G +F   +GP I
Sbjct: 252 ILLYGPPGTGKTLLARAIAAESGAHFVVVNGPEI 285


>gi|324994350|gb|EGC26264.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
           SK678]
 gi|327490776|gb|EGF22557.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
           SK1058]
 gi|332358558|gb|EGJ36382.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
           SK1056]
          Length = 422

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  +++  GQ       K+     +A    L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPTDIDQIIGQQHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTKFA 66

Query: 82  FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +  V +K       + A     L    VL +DEIHRL    ++ L P +E   L +
Sbjct: 67  FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121

Query: 137 MVG 139
           M+G
Sbjct: 122 MIG 124


>gi|227830342|ref|YP_002832122.1| replication factor C small subunit [Sulfolobus islandicus
          L.S.2.15]
 gi|229579159|ref|YP_002837557.1| replication factor C small subunit [Sulfolobus islandicus
          Y.G.57.14]
 gi|284997767|ref|YP_003419534.1| Replication factor C [Sulfolobus islandicus L.D.8.5]
 gi|227456790|gb|ACP35477.1| Replication factor C [Sulfolobus islandicus L.S.2.15]
 gi|228009873|gb|ACP45635.1| Replication factor C [Sulfolobus islandicus Y.G.57.14]
 gi|284445662|gb|ADB87164.1| Replication factor C [Sulfolobus islandicus L.D.8.5]
          Length = 330

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 6/61 (9%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81
          RPRTL++   Q E    LK F+     + + + H+LF GPPG GKTT A  +  +L G N
Sbjct: 15 RPRTLDDIVNQREIIDRLKKFV-----KEKNMPHLLFAGPPGTGKTTAALALVHDLYGDN 69

Query: 82 F 82
          +
Sbjct: 70 Y 70


>gi|47226685|emb|CAG07844.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 797

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 77/196 (39%), Gaps = 46/196 (23%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP----------------VIAKAGDLAA-- 98
           VLF GPPG GKT LA+ +A E   NF S  GP                +  KA  L +  
Sbjct: 508 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARMLESEE 567

Query: 99  -----------LLTNLE----DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPS 143
                      +LT ++     ++V  I   +R  II   IL P   D    L+    P 
Sbjct: 568 LAQWWQVFAQQILTEMDGMSSKKNVFIIGATNRPDIIDPAILRPGRLD---QLIYIPLPD 624

Query: 144 ARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAV 203
            +      SR +++ A  R   ++  +   F +    N +   DL  I QR  K   LA+
Sbjct: 625 EK------SRISILKANLRKSPISQDVDLDF-LAKMTNGFSGADLTEICQRACK---LAI 674

Query: 204 TDEAACEIAMRSRGTP 219
            +    EI  R RG P
Sbjct: 675 RESIESEIRRRGRGRP 690



 Score = 37.0 bits (84), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT +A+ VA E G  F   +GP I
Sbjct: 235 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 268


>gi|327472989|gb|EGF18416.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
           SK408]
          Length = 422

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  +++  GQ       K+     +A    L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPTDIDQIIGQQHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTKFA 66

Query: 82  FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +  V +K       + A     L    VL +DEIHRL    ++ L P +E   L +
Sbjct: 67  FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121

Query: 137 MVG 139
           M+G
Sbjct: 122 MIG 124


>gi|325689545|gb|EGD31550.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
           SK115]
          Length = 422

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 12/123 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  +++  GQ       K+     +A    L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPTDIDQIIGQQHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTKFA 66

Query: 82  FRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           FR+ +  V +K       + A     L    VL +DEIHRL    ++ L P +E   L +
Sbjct: 67  FRTFNATVDSKKRLQEIAEEAKFSGGL----VLLLDEIHRLDKTKQDFLLPLLES-GLVI 121

Query: 137 MVG 139
           M+G
Sbjct: 122 MIG 124


>gi|227827646|ref|YP_002829426.1| replication factor C small subunit [Sulfolobus islandicus
          M.14.25]
 gi|229584850|ref|YP_002843352.1| replication factor C small subunit [Sulfolobus islandicus
          M.16.27]
 gi|238619814|ref|YP_002914640.1| replication factor C small subunit [Sulfolobus islandicus M.16.4]
 gi|227459442|gb|ACP38128.1| Replication factor C [Sulfolobus islandicus M.14.25]
 gi|228019900|gb|ACP55307.1| Replication factor C [Sulfolobus islandicus M.16.27]
 gi|238380884|gb|ACR41972.1| Replication factor C [Sulfolobus islandicus M.16.4]
 gi|323474696|gb|ADX85302.1| Replication factor C [Sulfolobus islandicus REY15A]
 gi|323477430|gb|ADX82668.1| Replication factor C [Sulfolobus islandicus HVE10/4]
          Length = 330

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 6/61 (9%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81
          RPRTL++   Q E    LK F+     + + + H+LF GPPG GKTT A  +  +L G N
Sbjct: 15 RPRTLDDIVNQREIIDRLKKFV-----KEKNMPHLLFAGPPGTGKTTAALALVHDLYGDN 69

Query: 82 F 82
          +
Sbjct: 70 Y 70


>gi|198283129|ref|YP_002219450.1| ATP-dependent protease La [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218666950|ref|YP_002425356.1| ATP-dependent protease La [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|198247650|gb|ACH83243.1| ATP-dependent protease La [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218519163|gb|ACK79749.1| ATP-dependent protease La [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 788

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 73/163 (44%), Gaps = 33/163 (20%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           + FVGPPG+GKT+L Q +AR +G  F R + G V  +A              G++   L 
Sbjct: 362 LCFVGPPGVGKTSLGQSIARAMGRKFVRVSLGGVHDEAEIRGHRRTYIGALPGNILQALG 421

Query: 102 NLEDRD-VLFIDEIHRL---------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINL 151
            +E R+ V+ +DEI +L         +  + E+L P       D  +       ++  +L
Sbjct: 422 KVEVRNPVMLLDEIDKLGAGGFHGDPAAALLEVLDPEQNRTFRDTYL-------AMPFDL 474

Query: 152 SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           S    IA    +  +  PL+DR  I I L+ Y  ED   I  R
Sbjct: 475 SHVFFIATANILDTIPGPLRDRMEI-ITLSGYTEEDKMHIASR 516


>gi|218201158|gb|EEC83585.1| hypothetical protein OsI_29256 [Oryza sativa Indica Group]
          Length = 837

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 8/71 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT +A+ +A+E   NF S  GP +     G+    + NL D+       +
Sbjct: 509 VLFYGPPGCGKTMMAKAIAKECKANFISIKGPELLTMWFGESEGNVRNLFDKARQSAPCI 568

Query: 109 LFIDEIHRLSI 119
           LF DE+  +++
Sbjct: 569 LFFDELDSIAV 579



 Score = 38.1 bits (87), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT LA+ +A E G +F   +GP I
Sbjct: 252 ILLYGPPGTGKTLLARAIAAESGAHFVVVNGPEI 285


>gi|159041543|ref|YP_001540795.1| AAA family ATPase, CDC48 subfamily protein [Caldivirga
           maquilingensis IC-167]
 gi|157920378|gb|ABW01805.1| AAA family ATPase, CDC48 subfamily [Caldivirga maquilingensis
           IC-167]
          Length = 852

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 53/118 (44%), Gaps = 17/118 (14%)

Query: 24  PRTLEEFTGQVE-ACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVV 74
           PR   E  G +E A   ++  +E      E   H        VL +GPPG GKT LA+ V
Sbjct: 175 PRVTWEDIGDLEEAKQKIRELVELPLKHPELFRHLGIEPPKGVLLIGPPGTGKTLLAKAV 234

Query: 75  ARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DVLFIDEIHRLSIIVEEI 124
           A E    F S +GP I     G+  A L  + D        ++FIDEI  ++   EE+
Sbjct: 235 ANEADAYFVSINGPEIVSKYYGESEARLREIFDEAKRNAPAIIFIDEIDSIAPKREEV 292



 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT LA+ VA E G NF +  GP I
Sbjct: 511 ILLFGPPGTGKTLLAKAVANESGANFIAVRGPEI 544


>gi|303244607|ref|ZP_07330940.1| AAA ATPase central domain protein [Methanothermococcus
          okinawensis IH1]
 gi|302485033|gb|EFL47964.1| AAA ATPase central domain protein [Methanothermococcus
          okinawensis IH1]
          Length = 514

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
          RP+T+ E  G  +    LK +IE    + + +  VL VGPPG GKTTLA  +A + G
Sbjct: 8  RPKTMAEVVGNTKIKEELKKWIEDY-LQGKPVKPVLLVGPPGCGKTTLANALANDYG 63


>gi|50306785|ref|XP_453368.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49642502|emb|CAH00464.1| KLLA0D06897p [Kluyveromyces lactis]
          Length = 835

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 3/79 (3%)

Query: 6   GLLSRNVSQEDADISLLR--PRTLEEFTGQVEACSNLKVFIEA-AKARAEALDHVLFVGP 62
            L S++   ED+ +   +  P  L +  G   A   LK ++E+ +  +  ++  V+  GP
Sbjct: 278 NLSSKSTVTEDSKLWTTKYAPTDLRQLCGNKGAIQKLKTWLESWSSGKKPSMRAVMLSGP 337

Query: 63  PGLGKTTLAQVVARELGVN 81
           PG+GKTT A +VA+ LG +
Sbjct: 338 PGIGKTTAAHLVAKSLGYD 356


>gi|325971760|ref|YP_004247951.1| ATP-dependent metalloprotease FtsH [Spirochaeta sp. Buddy]
 gi|324026998|gb|ADY13757.1| ATP-dependent metalloprotease FtsH [Spirochaeta sp. Buddy]
          Length = 655

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 53/104 (50%), Gaps = 15/104 (14%)

Query: 26  TLEEFTGQVEA-------CSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQVEA        S LK      K  A+    VL VGPPG GKT LA+ VA E 
Sbjct: 192 TFKDVAGQVEAKYELEEVVSFLKHPDHFTKVGAKIPRGVLLVGPPGTGKTLLAKAVAGES 251

Query: 79  GVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEI 114
           GV+F  TSG    +   G  AA + +L ++       +LFIDE+
Sbjct: 252 GVSFFHTSGSDFVEMFVGMGAARVRDLFEQARKHAPCILFIDEL 295


>gi|149196409|ref|ZP_01873464.1| ATPase, AAA family protein [Lentisphaera araneosa HTCC2155]
 gi|149140670|gb|EDM29068.1| ATPase, AAA family protein [Lentisphaera araneosa HTCC2155]
          Length = 430

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 56/121 (46%), Gaps = 18/121 (14%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP    +F GQ       S L+  IE      +    ++F GPPG GKT+LA ++++  
Sbjct: 16  LRPEGFGDFFGQGHLTAEGSLLRRSIEN-----DCFSSIIFTGPPGTGKTSLASIISKHT 70

Query: 79  GVNFRSTSG--------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
             +F + S             KA D A   +    + VLF+DEIHR +   ++ L   +E
Sbjct: 71  EADFIALSAIDSSVSEVRKAVKAADEARKFSGR--KTVLFVDEIHRFNKAQQDSLLKDIE 128

Query: 131 D 131
           +
Sbjct: 129 N 129


>gi|302901862|ref|XP_003048527.1| hypothetical protein NECHADRAFT_95752 [Nectria haematococca mpVI
           77-13-4]
 gi|256729460|gb|EEU42814.1| hypothetical protein NECHADRAFT_95752 [Nectria haematococca mpVI
           77-13-4]
          Length = 547

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 77/157 (49%), Gaps = 26/157 (16%)

Query: 22  LRPRTLEEFTGQVEACSN--LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +RPRTL++  GQ     N  L+  IE+++     +  ++  G  G GKTT+A+ +A+ +G
Sbjct: 139 MRPRTLDDVFGQDLVGPNGVLRSLIESSQ-----VPSMILWGASGTGKTTIARCIAQMVG 193

Query: 80  -----VNFRSTSGPVIAK-----AGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
                +N  ST    + K     A DLA  LT    + ++F DEIHR +   +++    +
Sbjct: 194 SRFIELNATSTGVAEVKKLFQEAANDLA--LTGR--KTIIFCDEIHRFNKAQQDVFLKPV 249

Query: 130 EDFQLDLM--VGEGPSARSVKINLSR---FTLIAATT 161
           E   + L+    E PS +     LSR   FTL   TT
Sbjct: 250 EAGTVTLIGATTENPSFKVAAALLSRCRTFTLQTLTT 286


>gi|256810701|ref|YP_003128070.1| AAA family ATPase, CDC48 subfamily [Methanocaldococcus fervens
           AG86]
 gi|256793901|gb|ACV24570.1| AAA family ATPase, CDC48 subfamily [Methanocaldococcus fervens
           AG86]
          Length = 903

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 48/109 (44%), Gaps = 16/109 (14%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
           T E+  G  E    ++  IE      E  +         VL VGPPG GKT LA+ VA E
Sbjct: 177 TYEDIGGLKEEVRKVREMIELPMRHPELFEKLGIEPPKGVLLVGPPGTGKTLLAKAVANE 236

Query: 78  LGVNFRSTSGPVIAKA------GDLAALLTNLEDR--DVLFIDEIHRLS 118
            G NF   +GP I          +L  +    E+    ++FIDEI  ++
Sbjct: 237 AGANFYVINGPEIMSKYVGETEENLRKIFEEAEENAPSIIFIDEIDAIA 285



 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 21/34 (61%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL  GPPG GKT LA+ VA E G NF S  GP I
Sbjct: 489 VLLFGPPGTGKTLLAKAVANESGANFISVKGPEI 522


>gi|163790370|ref|ZP_02184802.1| ATPase, AAA family protein [Carnobacterium sp. AT7]
 gi|159874441|gb|EDP68513.1| ATPase, AAA family protein [Carnobacterium sp. AT7]
          Length = 428

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 62/131 (47%), Gaps = 6/131 (4%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  ++   GQ       K+     +A+   L  ++  GPPG+GKT++A  +A      
Sbjct: 9   MRPTHIDNIVGQQHLVGKGKIIRRMVEAKM--LSSMILYGPPGIGKTSIASAIAGTTKFA 66

Query: 82  FRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
           FR  +     K  DL  ++    +    +L +DE+HRL    ++ L P +E+ ++ +++G
Sbjct: 67  FRVLNAASDTKK-DLQIVVEEAKMSGTVILLLDEVHRLDKPKQDFLLPHLENGRI-ILIG 124

Query: 140 EGPSARSVKIN 150
                  + IN
Sbjct: 125 ATTENPYITIN 135


>gi|270006572|gb|EFA03020.1| hypothetical protein TcasGA2_TC010443 [Tribolium castaneum]
          Length = 478

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 107/256 (41%), Gaps = 47/256 (18%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           L+P+ L++F GQ         L+  +E        + +++  GPPG GKT+L+ V+    
Sbjct: 98  LQPKCLDDFMGQSHVLGENTVLRTLLEKGD-----IPNMVLWGPPGCGKTSLSGVIQ--- 149

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED----------------RDVLFIDEIHRLSIIVE 122
           G+     S P   K   L A    ++D                R VLF+DEIHR +   +
Sbjct: 150 GI---CKSNPTKLKFVSLCAATAGVKDVQNIVSAAKLQQKFGCRTVLFMDEIHRFNKKQQ 206

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKIN---LSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +I    +E   + ++VG      S  +N   LSR  +I            + +R      
Sbjct: 207 DIFLLHVEKGDI-ILVGATTENPSFTVNSALLSRCRVIVLQKLDPDCLYQILERGA---- 261

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA-GRL---LRRVRDFAEV 235
              + +E    +V +GA+  G AV  +A   +A  S G  RIA G L   L+   D  +V
Sbjct: 262 -RNFNVE----VVDKGARSKGFAVQADALKWLADISDGDARIALGNLQLVLQYNEDKNKV 316

Query: 236 AHAKTITREIADAALL 251
              + I  +I  + LL
Sbjct: 317 VTIEDIKEKIKKSHLL 332


>gi|298290429|ref|YP_003692368.1| ATP-dependent protease La [Starkeya novella DSM 506]
 gi|296926940|gb|ADH87749.1| ATP-dependent protease La [Starkeya novella DSM 506]
          Length = 813

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 78/185 (42%), Gaps = 42/185 (22%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           + F GPPG+GKT+L Q +AR +G  F R + G V  +A              G++   + 
Sbjct: 377 LCFAGPPGVGKTSLGQSIARAMGRKFVRVSLGGVHDEAEIRGHRRTYVGALPGNIIQGIR 436

Query: 102 NLEDRD-VLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152
               RD V+ +DEI ++        S  + E+L P       D  +G       V  +LS
Sbjct: 437 KAGTRDCVMMLDEIDKMGSGIQGDPSAAMLEVLDPEQNGTFRDNYLG-------VPFDLS 489

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR----------GAKLTGLA 202
           R   IA    +  +  PL+DR  I I+L  Y   +   I +R          G K   + 
Sbjct: 490 RVVFIATANMLDTIPGPLRDRMEI-IQLTGYTDTEKLQIAKRYLVRRQLEANGVKPEQVE 548

Query: 203 VTDEA 207
           V DEA
Sbjct: 549 VDDEA 553


>gi|323704705|ref|ZP_08116283.1| PTS system transcriptional activator [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323536167|gb|EGB25940.1| PTS system transcriptional activator [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 884

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 35/134 (26%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVN---FRSTSGPVIAKAGDLAA----LLTNL----- 103
           H L +GP G+GK+T A+++ +  GV    F+S S  V+    D A     L++ L     
Sbjct: 170 HTLIIGPTGVGKSTFAEMMYK-FGVEAKVFKSNSPFVVFNCADYAQNPQLLMSQLFGHIK 228

Query: 104 --------------EDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSV 147
                         E+ D  +LF+DEIHR+    +E+L+  +++ +   + GE  + RSV
Sbjct: 229 GAFTGADKEKRGLIEEADGGILFLDEIHRMPPEGQEMLFTLIDNGKYRRL-GETENVRSV 287

Query: 148 KINLSRFTLIAATT 161
           K+      +IAATT
Sbjct: 288 KV-----LIIAATT 296


>gi|94985892|ref|YP_605256.1| ATPase [Deinococcus geothermalis DSM 11300]
 gi|94556173|gb|ABF46087.1| ATPase associated with various cellular activities, AAA_3
           [Deinococcus geothermalis DSM 11300]
          Length = 317

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 77/169 (45%), Gaps = 30/169 (17%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED---------- 105
           H+L    PG+GKTTLA  +AR LG++FR           DL  L  ++ D          
Sbjct: 49  HLLIEDQPGVGKTTLAHALARTLGLSFRRVQFTSDLLPADLLGL--SIWDAGSATFRHHP 106

Query: 106 ----RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATT 161
                +VL  DEI+R +   +  L  AME+ Q    V EG   R +    + F +IA   
Sbjct: 107 GPIFSEVLLADEINRAAPKTQSALLEAMEERQ----VSEGGVTRPLP---NPFFVIATQN 159

Query: 162 RVGLL-TNPLQ----DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTD 205
               + T+PL     DRF + + L + +    +T+++ G +  G AV D
Sbjct: 160 PTAFVGTSPLPEAQLDRFLLTVTLGYPDPRAERTLLETGGR--GEAVRD 206


>gi|269126366|ref|YP_003299736.1| AAA ATPase central domain-containing protein [Thermomonospora
           curvata DSM 43183]
 gi|268311324|gb|ACY97698.1| AAA ATPase central domain protein [Thermomonospora curvata DSM
           43183]
          Length = 463

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 56/116 (48%), Gaps = 8/116 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA---REL 78
           +RPR L+E  GQ E        I     R   +  VL+ GPPG GKTTLA VVA   R  
Sbjct: 38  MRPRGLDEVIGQ-EHLLGPGTPIRQLVDRDAPMSLVLW-GPPGTGKTTLAYVVAGVTRRR 95

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNL---EDRDVLFIDEIHRLSIIVEEILYPAMED 131
            V   + S  V     ++      L     + VLF+DE+HR +   ++ L PA+E+
Sbjct: 96  FVEISAVSDGVKKVRAEIETARRELGMTGRQTVLFVDEVHRFNKAQQDALLPAVEN 151


>gi|313212534|emb|CBY36498.1| unnamed protein product [Oikopleura dioica]
 gi|313219619|emb|CBY30541.1| unnamed protein product [Oikopleura dioica]
          Length = 329

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP  L++     E  S +K FI+      E L H+LF GPPG GKT+    VA+EL
Sbjct: 15 RPNKLDDLISHTEIISTIKKFIDN-----EQLPHLLFYGPPGTGKTSTILAVAKEL 65


>gi|312083246|ref|XP_003143781.1| hypothetical protein LOAG_08200 [Loa loa]
 gi|307761057|gb|EFO20291.1| hypothetical protein LOAG_08200 [Loa loa]
          Length = 294

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 41/115 (35%), Positives = 54/115 (46%), Gaps = 23/115 (20%)

Query: 26  TLEEFTGQVEACSNLKVFIEA-----------AKARAEALDHVLFVGPPGLGKTTLAQVV 74
           T+++  GQ+EA    K  +EA           A +       VL  GPPG GKT LAQ V
Sbjct: 69  TIDDIVGQIEA---KKALMEAVVDPVLYPEWFATSGHNPWRCVLLYGPPGTGKTRLAQSV 125

Query: 75  ARELGVNF-RSTSGPVIAK-AGDLAALLTNLEDR-------DVLFIDEIHRLSII 120
           ARE+   F + TS  +I+  +G    L+  L D         V+FIDEI  L  I
Sbjct: 126 AREMNTRFYQVTSSDLISTWSGQSEKLIRELFDHALAHNGSSVIFIDEIDSLCRI 180


>gi|228470546|ref|ZP_04055403.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Porphyromonas
           uenonis 60-3]
 gi|228307673|gb|EEK16649.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Porphyromonas
           uenonis 60-3]
          Length = 439

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL----- 103
           A  ++L VGP G GKT LAQ +AR L V F      V+ +AG    D+ ++++ L     
Sbjct: 137 AKSNILMVGPTGCGKTLLAQSIARMLQVPFAMVDATVLTQAGYVGEDIESIISRLLQNCD 196

Query: 104 -----EDRDVLFIDEIHRLS 118
                 +R ++FIDEI +++
Sbjct: 197 YDVAAAERGIVFIDEIDKIA 216


>gi|195125639|ref|XP_002007285.1| GI12852 [Drosophila mojavensis]
 gi|193918894|gb|EDW17761.1| GI12852 [Drosophila mojavensis]
          Length = 307

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 21/37 (56%), Positives = 24/37 (64%)

Query: 52 EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
          EA   VL  GPPG GKT LA+ +A E G+NF S  GP
Sbjct: 57 EAPSGVLLCGPPGCGKTLLAKAIANEAGINFISVKGP 93


>gi|158320208|ref|YP_001512715.1| ATP-dependent metalloprotease FtsH [Alkaliphilus oremlandii OhILAs]
 gi|158140407|gb|ABW18719.1| ATP-dependent metalloprotease FtsH [Alkaliphilus oremlandii OhILAs]
          Length = 587

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 63/133 (47%), Gaps = 26/133 (19%)

Query: 8   LSRNVSQE---------DADISLLRPRTLE--EFTGQVEACSNLKVFIEAAKARAEALDH 56
           LS+N SQ+         + DIS  +  T+      G  EA  N+   ++  K   +   +
Sbjct: 123 LSKNNSQQVSKEYDKMSNMDISTEKDSTIRFCNIAGNDEAKENIMELVDFIKNPQKYEKY 182

Query: 57  -------VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNL 103
                  ++  GPPG GKT +A+ +A E GV+F + SG    +      AG + +L  N 
Sbjct: 183 GARMPKGIILYGPPGTGKTLMAKALASEAGVDFLAVSGSDFVQVYAGLGAGRIRSLFKNA 242

Query: 104 EDRD--VLFIDEI 114
           +++   V+FIDEI
Sbjct: 243 KEKGKCVVFIDEI 255


>gi|67478402|ref|XP_654601.1| ATPase, AAA family protein [Entamoeba histolytica HM-1:IMSS]
 gi|56471662|gb|EAL49214.1| ATPase, AAA family protein [Entamoeba histolytica HM-1:IMSS]
          Length = 912

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 80/183 (43%), Gaps = 32/183 (17%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-----RSTSGPVIAKAGDLAALLTNLEDR---DV 108
           +LF GPPG GKT LA+ VA+E   NF      S       +A      L +L  +    V
Sbjct: 628 ILFFGPPGTGKTMLAKAVAKESKANFINASLSSLESKWFGEAEKFVKALFSLAAKLSPCV 687

Query: 109 LFIDEI-----HRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
           +FIDE+      R S    E L     +F   + + +G  ++    NL +  ++ AT R 
Sbjct: 688 IFIDEVDALLGKRTSQNENETLRKMKNEF---MTLWDGLKSQ----NLEQIIVLGATNRP 740

Query: 164 GLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ---RGAKLTGLAVTDEAACEIAMRSRGTPR 220
             L + +  RF   I ++    ED + I++   +G K+          C+I+  +  TP 
Sbjct: 741 FDLDDAILRRFSRRILVDLPTKEDRENILKIILKGEKID---------CDISKIAEKTPG 791

Query: 221 IAG 223
            +G
Sbjct: 792 YSG 794


>gi|302390612|ref|YP_003826433.1| membrane protease FtsH catalytic subunit [Thermosediminibacter
           oceani DSM 16646]
 gi|302201240|gb|ADL08810.1| membrane protease FtsH catalytic subunit [Thermosediminibacter
           oceani DSM 16646]
          Length = 599

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/95 (42%), Positives = 48/95 (50%), Gaps = 11/95 (11%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           EE    VE   + K FIE     A     VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 167 EELQEVVEFLKHPKKFIEMG---ARIPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISG 223

Query: 88  PVIAK--AGDLAALLTNLEDRD------VLFIDEI 114
               +   G  AA + +L D+       ++FIDEI
Sbjct: 224 SDFVEMFVGVGAARVRDLFDQAKKNAPCIVFIDEI 258


>gi|313201003|ref|YP_004039661.1| aaa atpase central domain-containing protein [Methylovorus sp.
           MP688]
 gi|312440319|gb|ADQ84425.1| AAA ATPase central domain protein [Methylovorus sp. MP688]
          Length = 440

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 16/119 (13%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP TL++  GQ         L++  ++ K     L  ++  GPPG+GKTTLA+++A   
Sbjct: 18  LRPATLDDVVGQKHLLGEGKPLRLAFQSGK-----LPSMILWGPPGVGKTTLARLIANTA 72

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAME 130
              F   S  V++   D+   +   +        R +LF+DE+HR +   ++   P +E
Sbjct: 73  DAEFIPLSA-VLSGIKDIREAVERAQHTLQQSGRRTILFVDEVHRFNKGQQDAFLPFVE 130


>gi|303244483|ref|ZP_07330818.1| AAA family ATPase, CDC48 subfamily [Methanothermococcus okinawensis
           IH1]
 gi|302485181|gb|EFL48110.1| AAA family ATPase, CDC48 subfamily [Methanothermococcus okinawensis
           IH1]
          Length = 746

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 48/109 (44%), Gaps = 16/109 (14%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
           + E+  G  E    ++  +E      E  D         VL  GPPG GKT LA+ VA E
Sbjct: 191 SYEDIGGLREEVKKIREMVELPMRYPELFDKLGIEPPKGVLLAGPPGTGKTLLAKAVANE 250

Query: 78  LGVNFRSTSGPVIAK--AGDLAALLTNL------EDRDVLFIDEIHRLS 118
            G NF + +GP I     G+    L  +      E   ++FIDEI  ++
Sbjct: 251 AGANFYTINGPEIMSKYVGETEENLRKIFEEAEEESPSIVFIDEIDAIA 299



 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 20/34 (58%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL  GPPG GKT LA+ VA E   NF S  GP I
Sbjct: 503 VLLFGPPGTGKTLLAKAVANESQANFISVKGPEI 536


>gi|239827838|ref|YP_002950462.1| recombination factor protein RarA [Geobacillus sp. WCH70]
 gi|239808131|gb|ACS25196.1| AAA ATPase central domain protein [Geobacillus sp. WCH70]
          Length = 430

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 11/114 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL--- 78
           +RPR ++E  GQ           +  K     +  +L  G PG+GKT+LA  +A  +   
Sbjct: 12  MRPRNIDEIVGQQHIIGPHTALYKMIKNGY--VPSLLLYGEPGVGKTSLAHAIAGTVQRD 69

Query: 79  --GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
              VN  ++    + +  + A L  N+    +LFIDEIHR +   ++ L P +E
Sbjct: 70  FFAVNATTSGKKELEEVVETAKLTGNV----ILFIDEIHRFNKAQQDYLLPHIE 119


>gi|257093851|ref|YP_003167492.1| ATP-dependent protease La [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257046375|gb|ACV35563.1| ATP-dependent protease La [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 806

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 110/253 (43%), Gaps = 50/253 (19%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           +  VGPPG+GKT+L Q +AR  G  F R + G V  +A              G +   ++
Sbjct: 354 LCLVGPPGVGKTSLGQSIARATGRKFVRMSLGGVRDEAEIRGHRRTYIGSMPGKILQNMS 413

Query: 102 NLEDRDVLF-IDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152
            +  ++ LF +DE+ ++        S  + E+L P      +D  V        V+ +LS
Sbjct: 414 KIGVKNPLFLLDEVDKMGQDFRGDPSSALLEVLDPEQNSTFVDHYV-------EVEYDLS 466

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR-----GAKLTGLAVTDEA 207
               +A    +  +  PL DR  + IRL+ Y  ++   I QR       K  GL  T+  
Sbjct: 467 EIMFVATANTLN-IPAPLLDRMEV-IRLSGYTEDEKVNIAQRYLLPKQMKNNGLRTTELT 524

Query: 208 ACEIAMRS--RGTPRIAG-RLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLD 264
             E A+R   R   R AG R L   RD ++      I R++    LLR +  K+     +
Sbjct: 525 VAESALRDIVRYYTREAGVRSLE--RDISK------ICRKVVKTLLLRKSQTKVAVSARN 576

Query: 265 L-RYLTMIARNFG 276
           L ++L +   NFG
Sbjct: 577 LDKFLGVRRYNFG 589


>gi|82703216|ref|YP_412782.1| ATP-dependent protease La [Nitrosospira multiformis ATCC 25196]
 gi|82411281|gb|ABB75390.1| ATP-dependent protease La [Nitrosospira multiformis ATCC 25196]
          Length = 790

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 83/188 (44%), Gaps = 40/188 (21%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           + FVGPPG+GKT+L Q +AR L   F R + G V  +A              G++   L 
Sbjct: 357 LCFVGPPGVGKTSLGQSIARALQRPFVRVSLGGVHDEAEMRGHRRTYIGAMPGNIVQSLR 416

Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLS 152
               R+ V+ +DE+ ++S  +         E+L P       D  +G       V  +LS
Sbjct: 417 KAGARNCVMMLDEVDKMSASLHGDPSAALLEVLDPEQNSTFRDNYLG-------VPFDLS 469

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ-----RGAKLTGLAVTDEA 207
           R   IA    +  +  P++DR  I I L  Y  E+   I Q     R  ++ GL+   E 
Sbjct: 470 RVVFIATANVIDNVPPPVRDRMEI-IDLPGYTREEKLQIAQRYLVGRQREVNGLS---ED 525

Query: 208 ACEIAMRS 215
            CEI++ +
Sbjct: 526 QCEISVEA 533


>gi|269213974|ref|ZP_06158287.1| replication-associated recombination protein A [Neisseria cinerea
           ATCC 14685]
 gi|269144864|gb|EEZ71282.1| replication-associated recombination protein A [Neisseria cinerea
           ATCC 14685]
          Length = 387

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 7/104 (6%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFI 111
           +L  GPPG+GKTTLA+++A+     F   S        I +A D A +        +LF+
Sbjct: 1   MLLWGPPGVGKTTLARILAQSFNAQFLPVSAVFSGVKDIREAIDKAEIALQQGRATILFV 60

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSR 153
           DE+HR +   ++   P +E   L  +    E PS       LSR
Sbjct: 61  DEVHRFNKAQQDAFLPHVESGLLTFIGATTENPSFEVNPALLSR 104


>gi|154151138|ref|YP_001404756.1| AAA family ATPase, CDC48 subfamily protein [Candidatus
           Methanoregula boonei 6A8]
 gi|153999690|gb|ABS56113.1| AAA family ATPase, CDC48 subfamily [Methanoregula boonei 6A8]
          Length = 801

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 43/85 (50%), Gaps = 16/85 (18%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDL-AALLTNLEDRD-----V 108
           VLF GPPG GKT +A+ VA E+  +F + SGP I     GD   AL     D +     +
Sbjct: 219 VLFYGPPGTGKTLIAKAVANEVDAHFSTLSGPEIMSKFYGDSEKALRDKFHDAEENAPSI 278

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQ 133
           +FIDEI  ++        P  ED Q
Sbjct: 279 IFIDEIDAIA--------PKREDVQ 295



 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 5/48 (10%)

Query: 52  EALDH-----VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG 94
           E LD+     +L  GPPG GKT LA+ +A +  +NF S  GP +   G
Sbjct: 481 EKLDYKPPRGILLFGPPGTGKTLLAKGIASKRQLNFISVKGPELLSKG 528


>gi|330833937|ref|YP_004408665.1| AAA family ATPase, CDC48 subfamily protein [Metallosphaera cuprina
           Ar-4]
 gi|329566076|gb|AEB94181.1| AAA family ATPase, CDC48 subfamily protein [Metallosphaera cuprina
           Ar-4]
          Length = 753

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 60/131 (45%), Gaps = 17/131 (12%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACS-NLKVFIEAAKARAEALDH--------VLFVG 61
            + +E    + + PR   E  G ++     L+  IE      E   H        VL  G
Sbjct: 159 TIKEEPVREAQVYPRVTWEDIGDLDDVKEKLREMIELPMKHPELFQHLGIEPPKGVLLYG 218

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL-EDRD-----VLFIDE 113
           PPG+GKT LA+ +A E+G  F S +GP I     G+    L  + +D D     ++FIDE
Sbjct: 219 PPGVGKTLLARALANEIGAYFVSINGPEIMSKFYGESEQRLREIFDDADKNAPSIIFIDE 278

Query: 114 IHRLSIIVEEI 124
           I  ++   EE+
Sbjct: 279 IDAIAPSREEV 289



 Score = 42.7 bits (99), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 55/114 (48%), Gaps = 12/114 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDR------DV 108
           VL  GPPG GKT LA+ VA E G NF +  GP V++K  G+    +  +  R       V
Sbjct: 491 VLLFGPPGTGKTMLAKAVATESGANFIAVRGPEVLSKWVGESEKAIREIFKRARQTAPTV 550

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTR 162
           +F DEI  ++     +     +    + MV +  S     + LS+  +IAAT R
Sbjct: 551 IFFDEIDSIA----PMRGMGYDSGVTERMVNQLLSEMDGIVPLSKVVVIAATNR 600


>gi|260909906|ref|ZP_05916594.1| ATP-dependent Clp protease subunit [Prevotella sp. oral taxon 472
           str. F0295]
 gi|260635951|gb|EEX53953.1| ATP-dependent Clp protease subunit [Prevotella sp. oral taxon 472
           str. F0295]
          Length = 753

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 72/171 (42%), Gaps = 24/171 (14%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKA----RAEALDHVLFVGPPGLGKTTLAQVVARE 77
           L  R  E+  GQ +A   +   I+ AKA      + L  +LFVGP G+GKT +A+V+A E
Sbjct: 448 LEKRMKEQIYGQNQAVELVTQAIQTAKAGLTEEGKPLSAMLFVGPTGVGKTEVARVLAHE 507

Query: 78  LGVNF------RSTSGPVIAKAGDLAALLTNLED------------RDVLFIDEIHRLSI 119
           LG+          T    +AK     A     ED              VL +DEI +   
Sbjct: 508 LGIELVRFDMSEYTEKHAVAKLIGSPAGYVGYEDGGLLTDAIRKIPNCVLLLDEIEKAHA 567

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRF--TLIAATTRVGLLTN 168
            +  IL   M+  +L    G+    R+V + ++       A+   VG  +N
Sbjct: 568 DIYNILLQVMDYARLTDNKGQKADFRNVVLIMTSNAGAQFASQANVGFASN 618


>gi|282165485|ref|YP_003357870.1| cell division control protein 48 [Methanocella paludicola SANAE]
 gi|282157799|dbj|BAI62887.1| cell division control protein 48 [Methanocella paludicola SANAE]
          Length = 765

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 38/76 (50%), Gaps = 8/76 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLEDR--DV 108
           VL  GPPG GKT +A+ VA E   NF S SGP I           L  +    ED    +
Sbjct: 218 VLLYGPPGTGKTMIAKAVASETDANFISISGPEIMSKYYGESEKQLRDIFKEAEDNAPSI 277

Query: 109 LFIDEIHRLSIIVEEI 124
           +FIDEI  ++   EE+
Sbjct: 278 IFIDEIDSIAPRREEV 293



 Score = 39.3 bits (90), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT LA+ VA E   NF S  GP +
Sbjct: 490 ILVFGPPGTGKTLLAKAVANESEANFISIKGPEV 523


>gi|219120710|ref|XP_002181088.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217407804|gb|EEC47740.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 930

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ +A E G NF S  GP
Sbjct: 645 VLFYGPPGCGKTLLAKAIANECGANFISIKGP 676



 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 72/157 (45%), Gaps = 33/157 (21%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALL--------TNLEDR 106
           VL  GP G GKT +A+ VA E G  F   +GP VI+K AG+    L         N +D 
Sbjct: 368 VLLTGPSGSGKTAMARAVAAETGAYFFVINGPEVISKRAGESETNLRRAFEDAEANADDY 427

Query: 107 D--VLFIDEIHRLSIIVE----EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAAT 160
           +  ++FIDEI  ++   E    E+    +    L LM G  P+        S+  ++AAT
Sbjct: 428 NGAIIFIDEIDSIAPKREKAGGEVEKRVVSQL-LTLMDGLKPT--------SKVVVMAAT 478

Query: 161 TRVGLLTNPLQ-----DR---FGIPIRLNFYEIEDLK 189
            R G++   L+     DR    GIP      EI  +K
Sbjct: 479 NRPGVIEPALRRPGRFDRELDMGIPDEQGRLEILQIK 515


>gi|253998904|ref|YP_003050967.1| recombination factor protein RarA [Methylovorus sp. SIP3-4]
 gi|253985583|gb|ACT50440.1| AAA ATPase central domain protein [Methylovorus sp. SIP3-4]
          Length = 440

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 16/119 (13%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP TL++  GQ         L++  ++ K     L  ++  GPPG+GKTTLA+++A   
Sbjct: 18  LRPATLDDVVGQKHLLGEGKPLRLAFQSGK-----LPSMILWGPPGVGKTTLARLIANTA 72

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAME 130
              F   S  V++   D+   +   +        R +LF+DE+HR +   ++   P +E
Sbjct: 73  DAEFIPLSA-VLSGIKDIREAVERAQHTLQQSGRRTILFVDEVHRFNKGQQDAFLPFVE 130


>gi|229581753|ref|YP_002840152.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus
           Y.N.15.51]
 gi|228012469|gb|ACP48230.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus
           Y.N.15.51]
          Length = 759

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 60/136 (44%), Gaps = 17/136 (12%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACS-NLKVFIEAAKARAEALDH-------- 56
           G  S  + QE    + + P+   E  G +E     ++  +E      E   H        
Sbjct: 168 GRTSLEIRQEPVKETAVVPKVTWEDIGDLEDVKEKIREIVELPMRHPEVFQHLGIEPPKG 227

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DV 108
           VL  GPPG+GKT LA+ +A E+G  F S +GP I     G+    L  + +        +
Sbjct: 228 VLLYGPPGVGKTLLARALANEIGAYFTSINGPEIMSKFYGESEQRLREIFEEAEKNAPAI 287

Query: 109 LFIDEIHRLSIIVEEI 124
           +FIDEI  ++   EE+
Sbjct: 288 IFIDEIDAIAPKREEV 303



 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT LA+ VA E G NF +  GP I
Sbjct: 503 ILLFGPPGTGKTMLAKAVATESGANFIAVRGPEI 536


>gi|291557549|emb|CBL34666.1| Recombination protein MgsA [Eubacterium siraeum V10Sc8a]
          Length = 416

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 70/143 (48%), Gaps = 10/143 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP TL+E  GQ    +  K       +R + + +++F GP G+GKTT+A ++A++  ++
Sbjct: 7   IRPSTLDEVVGQRHILAQGKPLYNII-SRGK-IPNMIFYGPSGVGKTTVANIIAQKTSMS 64

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRD-----VLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
               +G   A   D+  ++ NL         +LF+DEI  L+   ++ L   +E  ++ L
Sbjct: 65  LYRLNG-TQASTSDIKDVVANLGTFGAAGGILLFLDEIQYLNKKQQQTLLEYIESGEITL 123

Query: 137 MVG--EGPSARSVKINLSRFTLI 157
           +    E P        LSR T+ 
Sbjct: 124 IASTTENPYFYVYSAVLSRCTVF 146


>gi|51598717|ref|YP_072905.1| DNA polymerase III subunits gamma and tau [Borrelia garinii PBi]
 gi|51573288|gb|AAU07313.1| DNA polymerase III, subunits gamma and tau [Borrelia garinii PBi]
          Length = 560

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 93/227 (40%), Gaps = 25/227 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPR      GQ      LK  IE  K      +  +F GP G+GKT+ A+  AR L    
Sbjct: 12  RPRDFNSLEGQDFVVETLKHSIEKNKIA----NAYIFSGPRGVGKTSSARAFARCLNC-- 65

Query: 83  RSTSGPVIAKAGDL--AALLTNLEDRDVLFIDEIHRLSI-----IVEEILY-PAMEDF-- 132
              +GP +   G+      + N    DV+ ID     S+     I EEI++ PA+  +  
Sbjct: 66  --KNGPTVMPCGECNNCKSIENDSSLDVIEIDGASNTSVQDIRQIKEEIMFPPAISKYRI 123

Query: 133 ----QLDLMVGEGPSA--RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
               ++ ++     +A  ++++   +    I ATT    L   ++ R           +E
Sbjct: 124 YIIDEVHMLSNSAFNALLKTIEEPPNYIVFIFATTESHKLPETIKSRCQ-HFSFKLLSLE 182

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
            +  ++++      +   DEA   IA +S G+ R A  L  +V  F 
Sbjct: 183 KIYNMLKKVCFEDHIKYEDEALKWIAYKSSGSVRDAYTLFDQVVSFT 229


>gi|15896947|ref|NP_350296.1| Lon-like ATP-dependent protease [Clostridium acetobutylicum ATCC
           824]
 gi|15026822|gb|AAK81636.1|AE007867_3 Lon-like ATP-dependent protease [Clostridium acetobutylicum ATCC
           824]
 gi|325511124|gb|ADZ22760.1| Lon-like ATP-dependent protease [Clostridium acetobutylicum EA
           2018]
          Length = 634

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 64/157 (40%), Gaps = 46/157 (29%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL- 78
           SLLRP+T  E  GQ  A   L      +K  +    H++  GPPG+GKTT A++   E+ 
Sbjct: 165 SLLRPQTFSEIVGQERAIKAL-----VSKLASPYPQHIILYGPPGVGKTTAARIALEEVK 219

Query: 79  ---------GVNF------------RSTSGPVIAKAGD------------------LAAL 99
                      NF            R  + P++    D                   + L
Sbjct: 220 KLKYTPFKKDANFVEVDGATLRWDPREITNPLLGSVHDPIYQGSKRDLAETGVPEPKSGL 279

Query: 100 LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           +T+     VLFIDEI  L ++++  L   +ED +++ 
Sbjct: 280 VTDAHG-GVLFIDEIGELDVMLQNKLLKVLEDKKVEF 315


>gi|220933163|ref|YP_002510071.1| Sporulation protease LonC [Halothermothrix orenii H 168]
 gi|219994473|gb|ACL71076.1| Sporulation protease LonC [Halothermothrix orenii H 168]
          Length = 639

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 89/238 (37%), Gaps = 56/238 (23%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE- 77
           I L+RP++L+E  GQ  A   L      +K  +    HV+  GPPG+GKTT A++   E 
Sbjct: 161 IDLVRPKSLDEIVGQQRALKAL-----VSKIASPYPQHVILYGPPGVGKTTAARLALEEA 215

Query: 78  ---------------------LGVNFRSTSGPVIAKAGD------------------LAA 98
                                L  + R  + P++    D                     
Sbjct: 216 KKRQNTPFYGDSKFVEVDGATLRWDPREVTNPLLGSVHDPIYQGAKKVLAEGGVPEPKTG 275

Query: 99  LLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG-EGPSARSVKINLSR---- 153
           L+T      +LFIDEI  L  +++  L   MED ++         +  ++ + + +    
Sbjct: 276 LVTEAH-AGILFIDEIGELDPMLQNKLLKVMEDKRVKFESSYYDKNDENIPLYIKKLFEE 334

Query: 154 -----FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDE 206
                F LI ATTR     NP        +  N    ED++ IV    K   + + DE
Sbjct: 335 GAPADFILIGATTRSPSKINPAFRSRCAEVFFNPLSREDIQQIVINAVKKLTVKIEDE 392


>gi|291530943|emb|CBK96528.1| Recombination protein MgsA [Eubacterium siraeum 70/3]
          Length = 416

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 70/143 (48%), Gaps = 10/143 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP TL+E  GQ    +  K       +R + + +++F GP G+GKTT+A ++A++  ++
Sbjct: 7   IRPSTLDEVVGQRHILAQGKPLYNII-SRGK-IPNMIFYGPSGVGKTTVANIIAQKTSMS 64

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRD-----VLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
               +G   A   D+  ++ NL         +LF+DEI  L+   ++ L   +E  ++ L
Sbjct: 65  LYRLNG-TQASTSDIKDVVANLGTFGAAGGILLFLDEIQYLNKKQQQTLLEYIESGEITL 123

Query: 137 MVG--EGPSARSVKINLSRFTLI 157
           +    E P        LSR T+ 
Sbjct: 124 IASTTENPYFYVYSAVLSRCTVF 146


>gi|159149474|gb|ABW91184.1| CDC48/PAS1/SEC28 family ATPase [Nosema bombycis]
          Length = 640

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ VA E   NF S  GP  +    G+  + +  L DR       V
Sbjct: 375 VLFYGPPGCGKTLLAKAVATECQANFISIKGPELLTMWVGESESNVRELFDRARSAAPCV 434

Query: 109 LFIDEIHRLS 118
           LF DEI  ++
Sbjct: 435 LFFDEIDSVA 444


>gi|257065889|ref|YP_003152145.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Anaerococcus
           prevotii DSM 20548]
 gi|256797769|gb|ACV28424.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Anaerococcus
           prevotii DSM 20548]
          Length = 404

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 63/139 (45%), Gaps = 29/139 (20%)

Query: 9   SRNVSQEDADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEALD-------- 55
           +   S+  ADI L  P+ ++EF      GQ +A   L V +     R  + +        
Sbjct: 48  TNTASEFSADIDLSTPKEIKEFLDSYVIGQDDAKKTLSVAVYNHYKRINSNEEDSDIELQ 107

Query: 56  --HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTN----------- 102
             ++L +GP G GKT LAQ +AR+L V F       + +AG +   + N           
Sbjct: 108 KSNILMLGPTGSGKTLLAQTLARKLNVPFAIADATSLTEAGYVGEDVENIILKLVQAADY 167

Query: 103 ---LEDRDVLFIDEIHRLS 118
              + +R ++++DEI +++
Sbjct: 168 DIDIAERGIIYVDEIDKIT 186


>gi|305663891|ref|YP_003860179.1| replication factor C small subunit [Ignisphaera aggregans DSM
          17230]
 gi|304378460|gb|ADM28299.1| replication factor C small subunit [Ignisphaera aggregans DSM
          17230]
          Length = 323

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+TL E   Q E  + L  F+E        + H+LF GPPG GKTT A  +A +L
Sbjct: 10 RPKTLREIVNQEEIVNRLMKFVEEKN-----MPHLLFAGPPGTGKTTAALALAHDL 60


>gi|195375722|ref|XP_002046649.1| GJ12996 [Drosophila virilis]
 gi|194153807|gb|EDW68991.1| GJ12996 [Drosophila virilis]
          Length = 933

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 21/37 (56%), Positives = 24/37 (64%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           EA   VL  GPPG GKT LA+ +A E G+NF S  GP
Sbjct: 683 EAPSGVLLCGPPGCGKTLLAKAIANEAGINFISVKGP 719


>gi|167749904|ref|ZP_02422031.1| hypothetical protein EUBSIR_00872 [Eubacterium siraeum DSM 15702]
 gi|167657216|gb|EDS01346.1| hypothetical protein EUBSIR_00872 [Eubacterium siraeum DSM 15702]
          Length = 416

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 70/143 (48%), Gaps = 10/143 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP TL+E  GQ    +  K       +R + + +++F GP G+GKTT+A ++A++  ++
Sbjct: 7   IRPSTLDEVVGQRHILAQGKPLYNII-SRGK-IPNMIFYGPSGVGKTTVANIIAQKTSMS 64

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRD-----VLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
               +G   A   D+  ++ NL         +LF+DEI  L+   ++ L   +E  ++ L
Sbjct: 65  LYRLNG-TQASTSDIKDVVANLGTFGAAGGILLFLDEIQYLNKKQQQTLLEYIESGEITL 123

Query: 137 MVG--EGPSARSVKINLSRFTLI 157
           +    E P        LSR T+ 
Sbjct: 124 IASTTENPYFYVYSAVLSRCTVF 146


>gi|325967941|ref|YP_004244133.1| ATPase AAA [Vulcanisaeta moutnovskia 768-28]
 gi|323707144|gb|ADY00631.1| AAA family ATPase, possible cell division control protein cdc48
           [Vulcanisaeta moutnovskia 768-28]
          Length = 748

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 56/124 (45%), Gaps = 17/124 (13%)

Query: 18  DISLLRPRTLEEFTGQVE-ACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKT 68
           ++ L  PR   E  G +E A   ++  IE      E   H        VL +GPPG GKT
Sbjct: 170 EMELAMPRVTWEDIGDLEEAKRKIRELIELPLRHPEIFKHLGIEPPKGVLLIGPPGTGKT 229

Query: 69  TLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DVLFIDEIHRLSII 120
            LA+ VA E    F S +GP I     G+  A L  + +        ++FIDEI  ++  
Sbjct: 230 LLAKAVASEANAYFVSINGPEIMSKYYGESEAKLREIFEEAKKNAPAIIFIDEIDAIAPK 289

Query: 121 VEEI 124
            EE+
Sbjct: 290 REEV 293



 Score = 39.3 bits (90), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT LA+ VA E   NF +  GP I
Sbjct: 507 ILLFGPPGTGKTLLAKAVATESNANFIAVRGPEI 540


>gi|195018023|ref|XP_001984706.1| GH14878 [Drosophila grimshawi]
 gi|193898188|gb|EDV97054.1| GH14878 [Drosophila grimshawi]
          Length = 957

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 21/37 (56%), Positives = 24/37 (64%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           EA   VL  GPPG GKT LA+ +A E G+NF S  GP
Sbjct: 707 EAPSGVLLCGPPGCGKTLLAKAIANEAGINFISVKGP 743


>gi|299470801|emb|CBN79847.1| flagellar associated protein [Ectocarpus siliculosus]
          Length = 947

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
            LF GPPG GKT LA+ +A E G NF S  GP +     G+  A +  L D+       +
Sbjct: 667 TLFYGPPGCGKTLLAKAIANECGANFISVKGPELLSMWFGESEANVRELFDKARAAAPCI 726

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 727 LFFDEMDSIA 736



 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 61/134 (45%), Gaps = 28/134 (20%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           VL  GPPG GKT +A+ VA E G    + +GP I    +G+    L    +D +     +
Sbjct: 394 VLMYGPPGCGKTMIARAVASETGAYCFTINGPEIMSKLSGESETNLRKAFDDAEANSPAI 453

Query: 109 LFIDEIHRLSI-------IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATT 161
           +FIDEI  ++         VE+ +   +    L LM G  P+        S   +IAAT 
Sbjct: 454 IFIDEIDSIAPRRDKAGGEVEKRIVSQL----LTLMDGIKPT--------SHVVVIAATN 501

Query: 162 RVGLLTNPLQDRFG 175
           R  ++  P   RFG
Sbjct: 502 RPNVI-EPALRRFG 514


>gi|262200933|ref|YP_003272141.1| ATPase AAA [Gordonia bronchialis DSM 43247]
 gi|262084280|gb|ACY20248.1| AAA ATPase central domain protein [Gordonia bronchialis DSM 43247]
          Length = 591

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 87/214 (40%), Gaps = 59/214 (27%)

Query: 56  HVLFVGPPGLGKTTLAQVVAR-ELGVNFRSTSGPVIAKAGDL------------AALLTN 102
           H+ F GPPG GKTT+A++VA+   G+ F  +   + A   D+            +AL+ +
Sbjct: 345 HLAFTGPPGTGKTTIARIVAKIYCGLGFIKSDKVIEATRRDMVGEHLGSTAIKTSALIDS 404

Query: 103 LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRF-------- 154
             D  VLFIDE + L               Q  L  G+     +V   L+R         
Sbjct: 405 AMD-GVLFIDEAYTL--------------IQQGLSGGDAFGREAVDTLLARMEDDRDRLV 449

Query: 155 TLIAAT----TRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI-----VQRGAKLTGLAVTD 205
            +IA       R     + L  RF   IR + Y   +L  I      QR + LT  AVT+
Sbjct: 450 VIIAGYDAEIDRFLAANDGLSSRFARRIRFDSYTPNELARIGEFIARQRDSLLTSDAVTE 509

Query: 206 -EAACEIAMRSRGTP-----RIAGRLLRRVRDFA 233
            EAAC        TP     R  G L+RR  D A
Sbjct: 510 LEAAC--------TPLYHDLRTEGSLVRRASDLA 535


>gi|294657961|ref|XP_002770526.1| DEHA2E22286p [Debaryomyces hansenii CBS767]
 gi|199433083|emb|CAR65867.1| DEHA2E22286p [Debaryomyces hansenii]
          Length = 343

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 6/63 (9%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81
          RP +L+E  GQ +    ++ F+   K     L H+LF GPPG GKT+    +ARE+ G N
Sbjct: 30 RPDSLDEVYGQQDIVDTVRKFVHEGK-----LPHLLFYGPPGTGKTSTIIALAREIYGPN 84

Query: 82 FRS 84
          +++
Sbjct: 85 YKN 87


>gi|217979295|ref|YP_002363442.1| ATP-dependent protease La [Methylocella silvestris BL2]
 gi|302425063|sp|B8EMF2|LON_METSB RecName: Full=Lon protease; AltName: Full=ATP-dependent protease La
 gi|217504671|gb|ACK52080.1| ATP-dependent protease La [Methylocella silvestris BL2]
          Length = 810

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 85/200 (42%), Gaps = 43/200 (21%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           + FVGPPG+GKT+L Q +AR +G  F R + G V  +A              G++   + 
Sbjct: 381 LCFVGPPGVGKTSLGQSIARAMGRKFVRVSLGGVHDEAEIRGHRRTYVGALPGNIIQAIR 440

Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLS 152
               R+ V+ +DEI ++             E+L P       D  +       +V  +LS
Sbjct: 441 KAGARNCVMMLDEIDKMGASAHGDPGSAMLEVLDPEQNSTFRDNYL-------AVPFDLS 493

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL----KTIVQRGAKLTGLA-----V 203
           R   IA    +  +  PL+DR  I     + + E L    + +V+R  +  GL      +
Sbjct: 494 RVVFIATANMLDTVPGPLRDRMEIIALTGYTDREKLEIARRYLVRRQLEANGLKPDQVEI 553

Query: 204 TDEAACEIAMRSRGTPRIAG 223
            D+A  EI    RG  R AG
Sbjct: 554 DDDALIEII---RGYTREAG 570


>gi|45190411|ref|NP_984665.1| AEL196Wp [Ashbya gossypii ATCC 10895]
 gi|44983307|gb|AAS52489.1| AEL196Wp [Ashbya gossypii ATCC 10895]
          Length = 333

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 6/67 (8%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          I   RP +L++  GQ +    ++ F++  +     L H+LF GPPG GKT+    +A+E+
Sbjct: 14 IEKYRPDSLDDVYGQRDVVETVRKFVQEGR-----LPHLLFYGPPGTGKTSTICALAKEI 68

Query: 79 -GVNFRS 84
           G N+R+
Sbjct: 69 YGKNYRN 75


>gi|108773385|ref|YP_635847.1| cell division protein [Oltmannsiellopsis viridis]
 gi|122238318|sp|Q20EZ8|FTSHL_OLTVI RecName: Full=ATP-dependent zinc metalloprotease FtsH homolog
 gi|82541967|gb|ABB82008.1| cell division protein [Oltmannsiellopsis viridis]
          Length = 2292

 Score = 46.6 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 10/118 (8%)

Query: 57   VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDL---AALLTNLEDRD------ 107
            +L VGPPG GKT L Q +A E  V     S  +I++ G+    A  LT+L  R       
Sbjct: 1337 ILLVGPPGTGKTLLVQAIAGEANVPVLVQSLSLISQPGESDSGAEKLTDLFKRARELSPC 1396

Query: 108  VLFIDEIHRLSIIVEEILY-PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164
            ++FIDEI  L I  + ++  P   D  L+ +  +    +    + S+ + +  TTR+G
Sbjct: 1397 IVFIDEIDTLGIKRQNLIQNPMGTDNLLNCLYPKNSGQQLSMTDGSKSSTVRTTTRLG 1454


>gi|83749189|ref|ZP_00946191.1| ATPase, AAA family [Ralstonia solanacearum UW551]
 gi|83724130|gb|EAP71306.1| ATPase, AAA family [Ralstonia solanacearum UW551]
          Length = 149

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 9/110 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP +++E  GQ       K  +  A A  E    +L+ GPPG+GKTTLA+++A      
Sbjct: 19  LRPHSVDEVIGQRHLLGQGKP-LRVAFASGEPHSMILW-GPPGVGKTTLARLMADAFDAE 76

Query: 82  FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEIL 125
           F + S  V++   D+   +   E       R ++F+DE+HR +  V   +
Sbjct: 77  FIALSA-VLSGVKDIREAVERAEQFRAHGRRTLVFVDEVHRFNKAVNHYI 125


>gi|307596113|ref|YP_003902430.1| AAA family ATPase [Vulcanisaeta distributa DSM 14429]
 gi|307551314|gb|ADN51379.1| AAA family ATPase, CDC48 subfamily [Vulcanisaeta distributa DSM
           14429]
          Length = 748

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 56/124 (45%), Gaps = 17/124 (13%)

Query: 18  DISLLRPRTLEEFTGQVE-ACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKT 68
           ++ L  PR   E  G +E A   ++  IE      E   H        VL +GPPG GKT
Sbjct: 170 EMELTMPRVTWEDIGDLEEAKRKIRELIELPLRHPEIFKHLGIEPPKGVLLIGPPGTGKT 229

Query: 69  TLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DVLFIDEIHRLSII 120
            LA+ VA E    F S +GP I     G+  A L  + +        ++FIDEI  ++  
Sbjct: 230 LLAKAVASEANAYFISINGPEIMSKYYGESEAKLREIFEEAKKNAPAIIFIDEIDAIAPK 289

Query: 121 VEEI 124
            EE+
Sbjct: 290 REEV 293



 Score = 39.3 bits (90), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT LA+ VA E   NF +  GP I
Sbjct: 507 ILLFGPPGTGKTLLAKAVATESNANFIAVRGPEI 540


>gi|241663732|ref|YP_002982092.1| recombination factor protein RarA [Ralstonia pickettii 12D]
 gi|240865759|gb|ACS63420.1| AAA ATPase central domain protein [Ralstonia pickettii 12D]
          Length = 449

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 11/130 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP + ++  GQ       K  +  A A  E    +L+ GPPG+GKTTLA+++A      
Sbjct: 21  LRPHSADDVIGQQHLLGPGKP-LRVAFASGEPHSMILW-GPPGVGKTTLARLMANAFDAE 78

Query: 82  FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMED--FQ 133
           F + S  V++   D+   +   E       R ++F+DE+HR +   ++   P +E   F 
Sbjct: 79  FIALSA-VLSGVKDIREAVERAEQFRANGRRTLVFVDEVHRFNKSQQDAFLPHVESGLFT 137

Query: 134 LDLMVGEGPS 143
                 E PS
Sbjct: 138 FIGATTENPS 147


>gi|123493043|ref|XP_001326199.1| ATPase, AAA family protein [Trichomonas vaginalis G3]
 gi|121909110|gb|EAY13976.1| ATPase, AAA family protein [Trichomonas vaginalis G3]
          Length = 325

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 35/62 (56%), Gaps = 6/62 (9%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81
          RP+ L++   Q EA   LK  +E        L H++F GPPG GKT+LA  + R L G +
Sbjct: 15 RPKNLDDIVQQEEAVKALKTTLETGD-----LPHLIFHGPPGTGKTSLALALCRSLFGED 69

Query: 82 FR 83
          FR
Sbjct: 70 FR 71


>gi|71906933|ref|YP_284520.1| recombination factor protein RarA [Dechloromonas aromatica RCB]
 gi|71846554|gb|AAZ46050.1| Recombination protein MgsA [Dechloromonas aromatica RCB]
          Length = 437

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 73/162 (45%), Gaps = 16/162 (9%)

Query: 7   LLSRNVSQEDADIS-LLRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGP 62
           L S N    +A ++  LRP   +E  GQ   +     L++  E+ +  +     ++  GP
Sbjct: 4   LFSSNAVDRNAPLAEQLRPLIPDEVIGQQHLLGPGKPLRLAFESGQPHS-----MILWGP 58

Query: 63  PGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           PG+GKTTLA+++A +    F + S        + +A   A +      R +LF+DEIHR 
Sbjct: 59  PGVGKTTLARMMATQFKCEFIALSAVFSGIKEVREAVVQAEMWRGQGKRTILFVDEIHRF 118

Query: 118 SIIVEEILYPAMED--FQLDLMVGEGPSARSVKINLSRFTLI 157
           +   ++   P +E   F       E PS       LSR ++ 
Sbjct: 119 NKAQQDGFLPFVESGLFTFIGATTENPSFEVNSALLSRASVY 160


>gi|167539916|ref|XP_001741415.1| hypothetical protein [Entamoeba dispar SAW760]
 gi|165894117|gb|EDR22201.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
          Length = 912

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 81/183 (44%), Gaps = 32/183 (17%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-----RSTSGPVIAKAGDLAALLTNLEDR---DV 108
           +LF GPPG GKT LA+ VA+E   NF      S       +A      L +L  +    V
Sbjct: 628 ILFFGPPGTGKTMLAKAVAKESKANFINASLSSLESKWFGEAEKFVKALFSLAAKLSPCV 687

Query: 109 LFIDEI-----HRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
           +FIDE+      R S    E L     +F   + + +G  ++    NL +  ++ AT R 
Sbjct: 688 IFIDEVDALLGKRTSQNENETLRKMKNEF---MTLWDGLKSQ----NLEQIIVLGATNRP 740

Query: 164 GLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ---RGAKLTGLAVTDEAACEIAMRSRGTPR 220
             L + +  RF   I ++    ED + I++   +G K      TD   C+I+  +  TP 
Sbjct: 741 FDLDDAILRRFSRRILVDLPTKEDRENILKIILKGEK------TD---CDISKIAEKTPG 791

Query: 221 IAG 223
            +G
Sbjct: 792 YSG 794


>gi|257455948|ref|ZP_05621165.1| ATPase, AAA family [Enhydrobacter aerosaccus SK60]
 gi|257446694|gb|EEV21720.1| ATPase, AAA family [Enhydrobacter aerosaccus SK60]
          Length = 428

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 67/266 (25%), Positives = 113/266 (42%), Gaps = 51/266 (19%)

Query: 22  LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP++L+E  GQ     A + ++  +E        L  ++  G  G+GKTTLA ++A  +
Sbjct: 14  VRPKSLDEVIGQTHLLGANAPIRRIVEQGY-----LPSIILHGEAGIGKTTLAMLLADAV 68

Query: 79  GVNFRSTSGPVIAKAGDLAALLTN----LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           G  FR  S  + A   +L  +L        +  V+F+DEIHR +   ++ L  A+E    
Sbjct: 69  GRPFRPLSA-INAGVKELREVLAKDDGLFGEPPVVFVDEIHRFNKAQQDALLGAVES--- 124

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLT--NPLQDRFGIPIRLNFYEIEDLKTIV 192
                               TLI ATT     +  N L  R  +  RLN    +++  ++
Sbjct: 125 -----------------GDITLIGATTENPSFSVNNALLSRCQV-YRLNPLSEDEISQVL 166

Query: 193 QRG----AKLTGLAVTDEAACEIAMRSRGTPRIAGRLL----RRVRDFAEVAHAKTITRE 244
           QR     A      +  +++  I   S+G  R A  LL    +   +F + + +  +  +
Sbjct: 167 QRAIDDDAVFKQFKIEIQSSQAIFALSQGDARKALNLLELAIQSSPNFKQGSQSAIVVTD 226

Query: 245 -----IADAALLRLAIDKMGFDQLDL 265
                +A A+L+R   DK G    DL
Sbjct: 227 DNVVAVAGASLVRY--DKSGDGHYDL 250


>gi|251778579|ref|ZP_04821499.1| ATP-dependent protease, Lon family [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243082894|gb|EES48784.1| ATP-dependent protease, Lon family [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 630

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 58/258 (22%), Positives = 101/258 (39%), Gaps = 62/258 (24%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           E + S+N+      +S LRP + +E  GQ  A  +L      +K  +    H++  GPPG
Sbjct: 154 EKVTSKNI------MSFLRPDSFDEVVGQERAIKSL-----ISKLSSPYPQHIILYGPPG 202

Query: 65  LGKTTLAQVVAREL-GVNF---------------------RSTSGPVIAKAGD------- 95
           +GKTT A++  +E   +NF                     R  + P++    D       
Sbjct: 203 VGKTTAARLALKEAKKLNFTPFDDESKFIEVDGTTLRWDPREITNPLLGSVHDPIYQGSK 262

Query: 96  -----------LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG----- 139
                         L+T      VLFIDEI  L  I++  L   +ED +++         
Sbjct: 263 RYLSEAGVPEPKPGLVTEAHG-GVLFIDEIGELDHILQNKLLKVLEDKRVEFSSSYYDPD 321

Query: 140 EGPSARSVKINLSR-----FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           +  + + +K          F LI ATT+     NP        +       +D++ IV++
Sbjct: 322 DESTPKYIKYLFDNGAPADFVLIGATTKSPSEINPALRSRATEVYFEPLSSDDIELIVKK 381

Query: 195 GAKLTGLAVTDEAACEIA 212
            A+   + + +  A +I+
Sbjct: 382 AAEKLNVTLEEGVAKKIS 399


>gi|187933433|ref|YP_001887715.1| ATP-dependent protease, Lon family [Clostridium botulinum B str.
           Eklund 17B]
 gi|187721586|gb|ACD22807.1| ATP-dependent protease, Lon family [Clostridium botulinum B str.
           Eklund 17B]
          Length = 630

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 58/258 (22%), Positives = 101/258 (39%), Gaps = 62/258 (24%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           E + S+N+      +S LRP + +E  GQ  A  +L      +K  +    H++  GPPG
Sbjct: 154 EKVTSKNI------MSFLRPDSFDEVVGQERAIKSL-----ISKLSSPYPQHIILYGPPG 202

Query: 65  LGKTTLAQVVAREL-GVNF---------------------RSTSGPVIAKAGD------- 95
           +GKTT A++  +E   +NF                     R  + P++    D       
Sbjct: 203 VGKTTAARLALKEAKKLNFTPFDDESKFVEVDGTTLRWDPREITNPLLGSVHDPIYQGSK 262

Query: 96  -----------LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG----- 139
                         L+T      VLFIDEI  L  I++  L   +ED +++         
Sbjct: 263 RYLSEAGVPEPKPGLVTEAHG-GVLFIDEIGELDHILQNKLLKVLEDKRVEFSSSYYDPD 321

Query: 140 EGPSARSVKINLSR-----FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           +  + + +K          F LI ATT+     NP        +       +D++ IV++
Sbjct: 322 DESTPKYIKYLFDNGAPADFVLIGATTKSPSEINPALRSRATEVYFEPLSSDDIELIVKK 381

Query: 195 GAKLTGLAVTDEAACEIA 212
            A+   + + +  A +I+
Sbjct: 382 AAEKLNVTLEEGVAKKIS 399


>gi|156743220|ref|YP_001433349.1| ATPase central domain-containing protein [Roseiflexus castenholzii
           DSM 13941]
 gi|156234548|gb|ABU59331.1| AAA ATPase central domain protein [Roseiflexus castenholzii DSM
           13941]
          Length = 660

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 12/70 (17%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA----GDLAALLTNLEDRD----- 107
           VL +GPPG GK+ +AQ VA E GV F   S P +  A    G++  +L   + R      
Sbjct: 153 VLLIGPPGTGKSYMAQAVATEAGVPFGYLSAPSLTSAWMGMGNMKVMLLYRKARKLAREY 212

Query: 108 ---VLFIDEI 114
              +LFIDEI
Sbjct: 213 GACILFIDEI 222


>gi|71027749|ref|XP_763518.1| cell division cycle protein 48 [Theileria parva strain Muguga]
 gi|68350471|gb|EAN31235.1| cell division cycle protein 48, putative [Theileria parva]
          Length = 954

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  L D+       +
Sbjct: 711 VLFYGPPGCGKTLLAKAIAHECNANFISIKGPELLTMWFGESEANVRELFDKARASAPCI 770

Query: 109 LFIDEIHRLS 118
           LF DEI  ++
Sbjct: 771 LFFDEIDSIA 780


>gi|309791201|ref|ZP_07685733.1| ATP-dependent protease La [Oscillochloris trichoides DG6]
 gi|308226763|gb|EFO80459.1| ATP-dependent protease La [Oscillochloris trichoides DG6]
          Length = 811

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 78/294 (26%), Positives = 122/294 (41%), Gaps = 61/294 (20%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAE-ALDH--------VLFVGPPGLGKT 68
           DI + R    E+  G  +    +  ++   + RAE   DH        + FVGPPG+GKT
Sbjct: 319 DIGVARQVLDEDHYGLTKIKERILEYLAVKQRRAELGDDHGRAGREPILAFVGPPGVGKT 378

Query: 69  TLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLTNLEDRD-VLFID 112
           +L Q +AR LG NF R + G V  +A              G L   L      D V+ +D
Sbjct: 379 SLGQSIARALGRNFVRMSLGGVRDEAELRGFRRTYIGSQPGRLIQELRRAGSSDPVILLD 438

Query: 113 EIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164
           EI +L        +  + E+L P   +   D  +       ++  +LS+   IA      
Sbjct: 439 EIDKLGNDYRGDPASALLEVLDPEQNNTFTDHYL-------NLPFDLSQVLFIATANSWD 491

Query: 165 LLTNPLQDRFGIPIRLNFYEIEDLKT------IVQRGAKLTGLAVTDEAACEIAMRS--- 215
            +   L+DR  + I L+ Y IED K       +V R  +  GL  ++    E A+R+   
Sbjct: 492 NVPPALRDRMEV-IDLSGY-IEDEKVQIAQTHLVPRQLRANGLRPSEAEVSEAALRTIIG 549

Query: 216 --------RGTPRIAGRLLRRV-RDFAEVAHAKTITREIADAALLRLAIDKMGF 260
                   R   R  G +LR+V R  AE  +  +    + D A +R A+ +  +
Sbjct: 550 DYTREAGVRNLERHIGGVLRKVTRRLAE-QNEPSEAAFVVDPAFVRTALGRQRY 602


>gi|242398094|ref|YP_002993518.1| Replication factor C small subunit [Thermococcus sibiricus MM
          739]
 gi|242264487|gb|ACS89169.1| Replication factor C small subunit [Thermococcus sibiricus MM
          739]
          Length = 766

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 6/64 (9%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81
          RP  L++  GQ      LK +++ A     ++ H+LF GPPG GKTT +  +AREL G +
Sbjct: 23 RPERLDDIVGQDHIVKRLKHYVKTA-----SMPHLLFAGPPGTGKTTSSLALARELFGEH 77

Query: 82 FRST 85
          +R  
Sbjct: 78 WRHN 81


>gi|148554068|ref|YP_001261650.1| ATP-dependent protease La [Sphingomonas wittichii RW1]
 gi|148499258|gb|ABQ67512.1| ATP-dependent protease La [Sphingomonas wittichii RW1]
          Length = 801

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 80/182 (43%), Gaps = 36/182 (19%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           + F GPPG+GKT+L Q +A+ +G  F R + G V  +A              G++   + 
Sbjct: 372 LCFAGPPGVGKTSLGQSIAKAMGREFVRVSLGGVHDEAEIRGHRRTYIGALPGNIIQAIR 431

Query: 102 NLEDRD-VLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152
               RD V+ +DEI +L        S  + E+L P       D  +G       V  +LS
Sbjct: 432 KAGTRDCVMMLDEIDKLGRGIQGDPSAAMLEVLDPEQNGTFRDNYLG-------VPFDLS 484

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR---GAKLTGLAVTDEAAC 209
           R   IA    +  +  PL+DR  + I L  Y  E+   I +R   G +L    V+ EA  
Sbjct: 485 RVLFIATANMLDTIPGPLRDRMEV-ISLPGYTEEEKLHIARRYLVGRQLGANGVS-EAQV 542

Query: 210 EI 211
           EI
Sbjct: 543 EI 544


>gi|300726155|ref|ZP_07059612.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Prevotella
           bryantii B14]
 gi|299776625|gb|EFI73178.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Prevotella
           bryantii B14]
          Length = 821

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 6/86 (6%)

Query: 1   MMDREGLLSRNVSQEDADISL--LRPRTLEEFTGQVEACSNLKVFIEAAKA----RAEAL 54
           ++ R   +  +V +ED +  L  L  R  E   GQ EA S +   +E AKA      + L
Sbjct: 506 VLQRTCKIDASVMKEDDNKQLKTLYKRMAERIYGQDEAISQVVEAVEMAKAGLQDDNKPL 565

Query: 55  DHVLFVGPPGLGKTTLAQVVARELGV 80
             +LFVGP G+GKT +A+V+A++LG+
Sbjct: 566 ASLLFVGPTGVGKTEVARVLAQQLGI 591


>gi|302877500|ref|YP_003846064.1| MgsA AAA+ ATPase-like [Gallionella capsiferriformans ES-2]
 gi|302580289|gb|ADL54300.1| MgsA AAA+ ATPase-like [Gallionella capsiferriformans ES-2]
          Length = 439

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 63/130 (48%), Gaps = 17/130 (13%)

Query: 12  VSQEDADIS-LLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGK 67
            +Q DA ++  LRP+ ++E  GQ         L++  ++ +     L  ++  GPPG+GK
Sbjct: 7   AAQPDAPLAERLRPKHIDEVIGQSHLLGEGRPLRLAFQSGR-----LHSMILWGPPGVGK 61

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSII 120
           TTLA+++A      F   S  V++   D+   +   +          +LF+DE+HR +  
Sbjct: 62  TTLARLMASAFDAEFMPLSA-VLSGVKDIREAIAQAQRVLQQNGRHTILFVDEVHRFNKS 120

Query: 121 VEEILYPAME 130
            ++   P +E
Sbjct: 121 QQDAFLPFVE 130


>gi|146304983|ref|YP_001192299.1| AAA family ATPase [Metallosphaera sedula DSM 5348]
 gi|145703233|gb|ABP96375.1| AAA family ATPase, CDC48 subfamily [Metallosphaera sedula DSM 5348]
          Length = 760

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 60/131 (45%), Gaps = 17/131 (12%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQV-EACSNLKVFIEAAKARAEALDH--------VLFVG 61
            + +E    + + PR   E  G + E    L+  IE      E   H        VL  G
Sbjct: 166 TIKEEPVREAQVYPRVTWEDIGDLDEVKEKLREMIELPMKHPELFQHLGIEPPKGVLLYG 225

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL-EDRD-----VLFIDE 113
           PPG+GKT LA+ +A E+G  F + +GP I     G+    L  + +D D     ++FIDE
Sbjct: 226 PPGVGKTLLARALANEIGAYFVTINGPEIMSKFYGESEQRLREIFDDADKNAPSIIFIDE 285

Query: 114 IHRLSIIVEEI 124
           I  ++   EE+
Sbjct: 286 IDAIAPKREEV 296



 Score = 42.4 bits (98), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDR------DV 108
           VL  GPPG GKT LA+ VA E G NF +  GP V++K  G+    +  +  R       V
Sbjct: 498 VLLFGPPGTGKTMLAKAVATESGANFIAVRGPEVLSKWVGESEKAIREIFKRARQTAPTV 557

Query: 109 LFIDEIHRLS 118
           +F DEI  ++
Sbjct: 558 VFFDEIDSIA 567


>gi|310821709|ref|YP_003954067.1| ATP-dependent protease la 2 [Stigmatella aurantiaca DW4/3-1]
 gi|309394781|gb|ADO72240.1| ATP-dependent protease La 2 [Stigmatella aurantiaca DW4/3-1]
          Length = 835

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 97/230 (42%), Gaps = 52/230 (22%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA---GDLAALLTNLEDR------ 106
           +  VGPPG+GKT+L Q VAR  G  F R + G V  +A   G     +  L  R      
Sbjct: 375 LCLVGPPGVGKTSLGQSVARATGRKFVRLSLGGVRDEAEIRGHRRTYVGALPGRFIQSMK 434

Query: 107 ------DVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152
                  V+ +DEI +L        S  + E+L P   +   D  +        V  +LS
Sbjct: 435 KSGMKNPVMMLDEIDKLGADFRGDPSAALLEVLDPEQNNTFSDHYL-------DVPFDLS 487

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI-----VQRGAKLTGLA----- 202
           +   IA   ++  +  PL+DR  I I L  Y  E+ ++I     V +  K  GL+     
Sbjct: 488 KVMFIATANQLDPIPGPLRDRMEI-IELTGYTFEEKQSIARIHLVPKQLKEHGLSTDHID 546

Query: 203 VTDEAACEIAMRSRGTPRIAG--RLLRRVRDFA-----EVAHAKTITREI 245
           VTDEA   +   +    R AG   L RR+ D       EVA  KT  + I
Sbjct: 547 VTDEALLTL---TTSYTREAGVRNLERRIADLCRAVAVEVAGGKTEKQTI 593


>gi|229827998|ref|ZP_04454067.1| hypothetical protein GCWU000342_00047 [Shuttleworthia satelles DSM
           14600]
 gi|229792592|gb|EEP28706.1| hypothetical protein GCWU000342_00047 [Shuttleworthia satelles DSM
           14600]
          Length = 480

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 58/183 (31%), Positives = 83/183 (45%), Gaps = 46/183 (25%)

Query: 56  HVLFVGPPGLGKTTLAQVVAR---ELGVNFRST------SGPVIAKAGDLAALLTNLEDR 106
           H++F G PG GKTT+A+++AR   ++GV  +        SG V    G   AL T  + +
Sbjct: 189 HLVFSGNPGTGKTTVARIIARLYKQIGVLSKGQLVECDRSGLVAGFVGQ-TALKTQEKIQ 247

Query: 107 ----DVLFIDEIHRLS----------IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152
                VLFIDE + L+            VE IL  AMED + DL+V              
Sbjct: 248 AALGGVLFIDEAYALTPGDGTNDYGQEAVETIL-KAMEDHRDDLVV-------------- 292

Query: 153 RFTLIAATT---RVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAA 208
              ++A  T   R  + +NP L+ RF   I    Y IE+L TI +   +     + DEA 
Sbjct: 293 ---IVAGYTGPMRHFVESNPGLKSRFNKYIDFPDYSIEELLTIFEGNCRKYEYVLADEAK 349

Query: 209 CEI 211
            E+
Sbjct: 350 EEV 352


>gi|282896586|ref|ZP_06304604.1| AAA ATPase, central region protein [Raphidiopsis brookii D9]
 gi|281198528|gb|EFA73411.1| AAA ATPase, central region protein [Raphidiopsis brookii D9]
          Length = 615

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 45/80 (56%), Gaps = 8/80 (10%)

Query: 47  AKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLE 104
           AK   E    VL VGPPG GKT  A+ +A ELGVN+ +  GP VI+K  G+    L  + 
Sbjct: 122 AKLGLEPTHGVLLVGPPGTGKTLTARALAEELGVNYIALVGPEVISKYYGEAEQKLRGIF 181

Query: 105 DRD------VLFIDEIHRLS 118
           ++       ++FIDEI  L+
Sbjct: 182 EKAAKNAPCIIFIDEIDSLA 201



 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 38/79 (48%), Gaps = 8/79 (10%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLT 101
           + +A A   +L  GPPG GKT LA+ VA +   NF   +GP      V A    +  L  
Sbjct: 389 QTKAVAPRGILLWGPPGTGKTLLAKAVASQARANFIGVNGPELLTRWVGASEQAVRELFA 448

Query: 102 NLEDRD--VLFIDEIHRLS 118
                D  V+FIDEI  L+
Sbjct: 449 KARQADPCVIFIDEIDTLA 467


>gi|118594830|ref|ZP_01552177.1| ATP-dependent protease ATP-binding subunit [Methylophilales
           bacterium HTCC2181]
 gi|118440608|gb|EAV47235.1| ATP-dependent protease ATP-binding subunit [Methylophilales
           bacterium HTCC2181]
          Length = 425

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 32/133 (24%)

Query: 18  DISLLRPRTL-----EEFTGQVEACSNLKVFIEAAKARAEALDH-------------VLF 59
           +++LL+P+ L     E   GQ EA  +L V +     R +  DH             +LF
Sbjct: 61  ELTLLKPKELFLKLDEHVIGQEEAKKSLAVAVYNHYKRLQVSDHKDELSDVKISKSNILF 120

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNLEDR--------- 106
           +GP G GKT LAQ +A  L V F       + +AG    D+  ++  L  R         
Sbjct: 121 IGPTGSGKTLLAQTLADLLQVPFVMADATTLTEAGYVGEDVENIMQKLLQRCDYDIDKAQ 180

Query: 107 -DVLFIDEIHRLS 118
             +++IDE+ ++S
Sbjct: 181 KGIVYIDEVDKIS 193


>gi|108763822|ref|YP_632173.1| ATP-dependent protease La [Myxococcus xanthus DK 1622]
 gi|547861|sp|P36774|LON2_MYXXA RecName: Full=Lon protease 2; AltName: Full=ATP-dependent protease
           La 2
 gi|309546|gb|AAA72018.1| ATP-dependent protease [Myxococcus xanthus]
 gi|435451|dbj|BAA02491.1| ATP-dependent protease La [Myxococcus xanthus]
 gi|108467702|gb|ABF92887.1| ATP-dependent protease La [Myxococcus xanthus DK 1622]
          Length = 827

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 82/356 (23%), Positives = 137/356 (38%), Gaps = 85/356 (23%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTT 69
            +S+++ DI   R +  ++  G  +    +  ++   K + +    +L  VGPPG+GKT+
Sbjct: 328 KISEDNLDIENARQQLDKDHFGIKKVKKRILEYLAVRKLKNDMRGPILCLVGPPGVGKTS 387

Query: 70  LAQVVARELGVNF-RSTSGPVIAKA---GDLAALLTNLEDR------------DVLFIDE 113
           L Q VA+  G  F R + G V  +A   G     +  L  R             V+ +DE
Sbjct: 388 LGQSVAKATGRKFVRLSLGGVRDEAEIRGHRRTYVGALPGRFIQSMKKAGTKNPVMMLDE 447

Query: 114 IHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
           I +L        S  + E+L P   +   D  +        V  +LS+   +A   ++  
Sbjct: 448 IDKLGADFRGDPSAALLEVLDPEQNNTFSDHYL-------DVPFDLSKVMFVATANQLDP 500

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTI-----VQRGAKLTGLA-----VTDEAACEIAMRS 215
           +  PL+DR  I I L  Y  E+ ++I     V +  K  GL+     +TDEA        
Sbjct: 501 IPGPLRDRMEI-IELTGYTFEEKQSIARIHLVPKQLKEHGLSPDHIDITDEA-------- 551

Query: 216 RGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNF 275
                    LL     +   A  + + R IAD                       +A   
Sbjct: 552 ---------LLTLTTAYTREAGVRNLERRIAD-------------------ICRAVAVEV 583

Query: 276 GGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
            GG    +TI+A      D +++++ P M      +RT    +   +AW   G D+
Sbjct: 584 AGGKTEKQTINA------DRVKEILGPEMFYSEVAERTEVPGVATGLAWTAAGGDL 633


>gi|188588300|ref|YP_001922698.1| ATP-dependent protease, Lon family [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188498581|gb|ACD51717.1| ATP-dependent protease, Lon family [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 630

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 58/258 (22%), Positives = 101/258 (39%), Gaps = 62/258 (24%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           E + S+N+      +S LRP + +E  GQ  A  +L      +K  +    H++  GPPG
Sbjct: 154 EKVTSKNI------MSFLRPDSFDEVVGQERAIKSL-----ISKLSSPYPQHIILYGPPG 202

Query: 65  LGKTTLAQVVAREL-GVNF---------------------RSTSGPVIAKAGD------- 95
           +GKTT A++  +E   +NF                     R  + P++    D       
Sbjct: 203 VGKTTAARLALKEAKKLNFTPFDDESKFIEVDGTTLRWDPREITNPLLGSVHDPIYQGSK 262

Query: 96  -----------LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG----- 139
                         L+T      VLFIDEI  L  I++  L   +ED +++         
Sbjct: 263 RYLSEAGVPEPKPGLVTEAHG-GVLFIDEIGELDHILQNKLLKVLEDKRVEFSSSYYDPD 321

Query: 140 EGPSARSVKINLSR-----FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           +  + + +K          F LI ATT+     NP        +       +D++ IV++
Sbjct: 322 DESTPKYIKYLFDNGAPADFVLIGATTKSPSEINPALRSRATEVYFEPLSSDDIELIVKK 381

Query: 195 GAKLTGLAVTDEAACEIA 212
            A+   + + +  A +I+
Sbjct: 382 AAEKLNVTLEEGVAKKIS 399


>gi|156083703|ref|XP_001609335.1| cell division cycle protein ATPase [Babesia bovis T2Bo]
 gi|154796586|gb|EDO05767.1| cell division cycle protein ATPase, putative [Babesia bovis]
          Length = 922

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  L D+       +
Sbjct: 673 VLFYGPPGCGKTLLAKAIAHECNANFISIKGPELLTMWFGESEANVRELFDKARAAAPCI 732

Query: 109 LFIDEIHRLS 118
           LF DEI  ++
Sbjct: 733 LFFDEIDSIA 742



 Score = 38.1 bits (87), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 60/130 (46%), Gaps = 20/130 (15%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLAALLTNLEDR------DV 108
           V+  GPPG GKT +A+ +A E G +    +GP I     G+  A L    ++       +
Sbjct: 398 VILHGPPGTGKTLIARAIASETGAHCVVINGPEIMSKHVGESEAKLRRAFEKASKNSPAI 457

Query: 109 LFIDEIHRLSIIVEEI---LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
           +FIDEI  ++   E+    L   +    L LM G  PS   V        ++AAT R+  
Sbjct: 458 IFIDEIDSIATKREKSPSELERRIVSQLLTLMDGIEPSKNVV--------VLAATNRINS 509

Query: 166 LTNPLQDRFG 175
           +   L+ RFG
Sbjct: 510 IDTALR-RFG 518


>gi|326336645|ref|ZP_08202813.1| DNA polymerase III, gamma/tau subunit DnaX [Capnocytophaga sp. oral
           taxon 338 str. F0234]
 gi|325691115|gb|EGD33086.1| DNA polymerase III, gamma/tau subunit DnaX [Capnocytophaga sp. oral
           taxon 338 str. F0234]
          Length = 363

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 97/258 (37%), Gaps = 55/258 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T ++  GQ      L    E A A       +LF GP G+GKTT A+++A++  +N 
Sbjct: 12  RPQTFKDVVGQQAITDTL----ENAIANDHLAQALLFTGPRGVGKTTCARILAKK--INE 65

Query: 83  RSTSGPVIAKAGDLAALLTNLE------------------------DRDVLFIDEIHRLS 118
           ++TS     +  D A  +  L+                           V  IDE+H LS
Sbjct: 66  KTTSTQ--EEDNDFAFNIFELDAASNNSVEGIRSLIEQVRIPPQVGKYKVYIIDEVHMLS 123

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
                        F   L   E P A ++         I ATT    +   +  R  I  
Sbjct: 124 NAA----------FNAFLKTLEEPPAHAI--------FILATTEKHKVIPTILSRCQI-F 164

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
                 I D +  ++  AK  GL   DEA   IA ++ G  R A  +  RV  F      
Sbjct: 165 DFKRITINDAREYLKYIAKEQGLNAEDEALQIIAQKADGAMRDALSIFDRVVSFC----G 220

Query: 239 KTITREIADAALLRLAID 256
           KTITR+     L  L  D
Sbjct: 221 KTITRQAVSEILNVLDYD 238


>gi|316975253|gb|EFV58702.1| putative ATPase, AAA family [Trichinella spiralis]
          Length = 691

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 25/31 (80%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG+GKT LA+ +A E GVNF +TSG
Sbjct: 259 VLLVGPPGIGKTLLARAIAGEAGVNFFNTSG 289


>gi|294340162|emb|CAZ88534.1| Cell division protease ftsH [Thiomonas sp. 3As]
          Length = 629

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 49/91 (53%), Gaps = 8/91 (8%)

Query: 35  EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK-- 92
           E    LK  +E ++  A A   VL VGPPG+GKT LA+ VA E GV F S SG    +  
Sbjct: 192 EVVDFLKNPVEHSRLGARAPKGVLLVGPPGVGKTLLARAVAGEAGVPFFSISGSEFVEMF 251

Query: 93  AGDLAALLTNLEDR------DVLFIDEIHRL 117
            G  AA + +L ++       ++FIDE+  L
Sbjct: 252 VGVGAARVRDLFEQAREKSPAIIFIDELDAL 282


>gi|288555372|ref|YP_003427307.1| recombination factor protein RarA [Bacillus pseudofirmus OF4]
 gi|288546532|gb|ADC50415.1| recombination factor protein RarA, AAA ATPase [Bacillus
           pseudofirmus OF4]
          Length = 422

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 28/110 (25%), Positives = 53/110 (48%), Gaps = 3/110 (2%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ +E+  GQ     + K+           L  ++  GPPG+GKT++A  +A      
Sbjct: 10  MRPKKIEDIIGQSHLVGDGKLLRRMVDVGQ--LSSMILYGPPGVGKTSIATAIAGSTDTP 67

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           F+  +  V  K   ++A     +  + ++ +DE+HRL    ++ L P +E
Sbjct: 68  FKLLNAVVHNKKDMEIAVAEAKMHGQLIVILDEVHRLDKAKQDFLLPHLE 117


>gi|268325481|emb|CBH39069.1| replication factor C, small subunit [uncultured archaeon]
 gi|268325789|emb|CBH39377.1| replication factor C, small subunit [uncultured archaeon]
          Length = 322

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RPR LEE +GQ     NL+ ++     +   L H++F GP G+GKT  A  +ARE 
Sbjct: 12 RPRKLEEVSGQEAIIRNLQSYV-----KKRNLPHLIFSGPAGVGKTAAAVAMAREF 62


>gi|187929625|ref|YP_001900112.1| recombination factor protein RarA [Ralstonia pickettii 12J]
 gi|309781609|ref|ZP_07676343.1| magnesium chelatase, subunit ChlI family [Ralstonia sp. 5_7_47FAA]
 gi|187726515|gb|ACD27680.1| AAA ATPase central domain protein [Ralstonia pickettii 12J]
 gi|308919584|gb|EFP65247.1| magnesium chelatase, subunit ChlI family [Ralstonia sp. 5_7_47FAA]
          Length = 435

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 9/115 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP + ++  GQ       K  +  A A  E    +L+ GPPG+GKTTLA+++A      
Sbjct: 7   LRPHSADDVIGQQHLLGPGKP-LRVAFASGEPHSMILW-GPPGVGKTTLARLMANAFDAE 64

Query: 82  FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130
           F + S  V++   D+   +   E       R ++F+DE+HR +   ++   P +E
Sbjct: 65  FIALSA-VLSGVKDIREAVERAEQFRAHGRRTLVFVDEVHRFNKSQQDAFLPHVE 118


>gi|85057568|ref|YP_456484.1| recombination factor protein RarA [Aster yellows witches'-broom
           phytoplasma AYWB]
 gi|42632634|gb|AAS22248.1| AAA type ATPase [Aster yellows witches'-broom phytoplasma]
 gi|84789673|gb|ABC65405.1| ATPase, AAA family [Aster yellows witches'-broom phytoplasma AYWB]
          Length = 414

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 58/115 (50%), Gaps = 4/115 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP T+ +  GQ    ++    I        A   ++F G PG+GK++LAQV+A +L + 
Sbjct: 10  LRPSTITDIIGQSHLINDQNGIISRMLKNNYA-SSLIFYGVPGIGKSSLAQVLANDLQIK 68

Query: 82  FRSTSGPVIAKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           +       I K   L  ++    +  + +L I+EIHR++   ++IL   +E+  L
Sbjct: 69  Y-DIFNAAIDKKSKLEKIIQQALNFKKFILIIEEIHRMNKDRQDILLQYLENGHL 122


>gi|240146205|ref|ZP_04744806.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Roseburia
           intestinalis L1-82]
 gi|257201661|gb|EEU99945.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Roseburia
           intestinalis L1-82]
 gi|291536690|emb|CBL09802.1| endopeptidase Clp ATP-binding regulatory subunit (clpX) [Roseburia
           intestinalis M50/1]
 gi|291537974|emb|CBL11085.1| endopeptidase Clp ATP-binding regulatory subunit (clpX) [Roseburia
           intestinalis XB6B4]
          Length = 423

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 66/141 (46%), Gaps = 28/141 (19%)

Query: 12  VSQEDADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEALD---------HV 57
           V++ +  I+LL+P  L+ F      GQ +A   L V +     R  A D         ++
Sbjct: 58  VAEPEEQINLLKPEELKAFLDDYVIGQDQAKKVLSVAVYNHYKRIMAGDDLGVELQKSNI 117

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALL--------TNLE- 104
           L +GP G GKT LAQ +AR L V F       + +AG    D+  +L         N+E 
Sbjct: 118 LMLGPTGSGKTLLAQTLARVLNVPFAIADATTLTEAGYVGEDVENILLKIIQAADYNIER 177

Query: 105 -DRDVLFIDEIHRLSIIVEEI 124
             R +++IDEI ++S   E +
Sbjct: 178 AQRGIIYIDEIDKISKKSENV 198


>gi|7524829|ref|NP_045831.1| cell division protein FtsH [Chlorella vulgaris]
 gi|2224422|dbj|BAA57906.1| cell division protein FtsH [Chlorella vulgaris]
          Length = 930

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 55/120 (45%), Gaps = 15/120 (12%)

Query: 49  ARAEALDH-VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL---E 104
             +E L H +L  GPPG GKT L Q +A E  V     SG  + + G+ AA    L   E
Sbjct: 211 THSETLPHGILLTGPPGTGKTLLVQALAGEAQVPVIVLSGSSLMEPGESAAFKLQLVFQE 270

Query: 105 DRD----VLFIDEIHRLSIIVEEILY------PAMEDFQLDLMVGEGPSARSVKINLSRF 154
            R     ++FIDEI  LS    ++L       P  E F    ++   PS +SVK   S F
Sbjct: 271 ARQLAPCIVFIDEIDTLSSKRSQLLQNPMANDPGFESFLESFLLQSKPS-QSVKKTESFF 329


>gi|291563764|emb|CBL42580.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [butyrate-producing bacterium SS3/4]
          Length = 433

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 28/134 (20%)

Query: 19  ISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEAL---------DHVLFVGPPG 64
           I+LL+P+ ++EF      GQ EA   L V +     R  +           ++L +GP G
Sbjct: 62  INLLKPKEIKEFLDDYVIGQDEAKKVLSVAVYNHYKRITSKMESDVDLQKSNILMLGPTG 121

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---EDRDV-------LF 110
            GKT LAQ +A+ LGV F       + +AG    D+  +L  L    D DV       ++
Sbjct: 122 SGKTYLAQTLAKLLGVPFAIADATTLTEAGYVGEDVENILLKLIQAADNDVSRAEYGIIY 181

Query: 111 IDEIHRLSIIVEEI 124
           IDEI +++   E +
Sbjct: 182 IDEIDKITKKSENV 195


>gi|216263439|ref|ZP_03435434.1| DNA polymerase III, subunits gamma and tau [Borrelia afzelii ACA-1]
 gi|215980283|gb|EEC21104.1| DNA polymerase III, subunits gamma and tau [Borrelia afzelii ACA-1]
          Length = 566

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 94/227 (41%), Gaps = 25/227 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPR      GQ      LK  IE  K      +  +F GP G+GKT+ A+  AR L    
Sbjct: 12  RPRDFNSLEGQDFVVETLKHSIEKNKIA----NAYIFSGPRGVGKTSSARAFARCLNC-- 65

Query: 83  RSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSI-----IVEEILY-PAMEDF-- 132
              +GP +   G+ +   +   D   DV+ ID     S+     I EEI++ PA+  +  
Sbjct: 66  --KNGPTVMPCGECSNCKSIESDSSLDVIEIDGASNTSVQDIRQIKEEIMFPPAISKYRI 123

Query: 133 ----QLDLMVGEGPSA--RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
               ++ ++     +A  ++++   +    I ATT    L   ++ R           +E
Sbjct: 124 YIIDEVHMLSNSAFNALLKTIEEPPNYIVFIFATTESHKLPETIKSRCQ-HFSFKLLSLE 182

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
            +  ++++      +   DEA   IA +S G+ R A  L  +V  F 
Sbjct: 183 KIYNMLKKVCFEDHIKYEDEALKWIAYKSSGSVRDAYTLFDQVVSFT 229


>gi|73669094|ref|YP_305109.1| replication factor C small subunit [Methanosarcina barkeri str.
          Fusaro]
 gi|110287811|sp|Q46C63|RFCS_METBF RecName: Full=Replication factor C small subunit; Short=RFC small
          subunit; AltName: Full=Clamp loader small subunit
 gi|72396256|gb|AAZ70529.1| replication factor C small subunit [Methanosarcina barkeri str.
          Fusaro]
          Length = 334

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 5/65 (7%)

Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
          +E+  I   RP  L++  GQ E    LK ++         L H+LF GPPG+GKT  A  
Sbjct: 7  KEEIWIEKYRPVRLDQVAGQEETIERLKSYVATKN-----LPHLLFSGPPGVGKTASAVS 61

Query: 74 VAREL 78
          +ARE+
Sbjct: 62 IAREI 66


>gi|325677941|ref|ZP_08157583.1| ATPase, AAA family [Ruminococcus albus 8]
 gi|324110495|gb|EGC04669.1| ATPase, AAA family [Ruminococcus albus 8]
          Length = 313

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 69/163 (42%), Gaps = 42/163 (25%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFR--------------------STSGPVIAKAGD 95
           HVL    PG GKTTLA  +AR LG+ F+                       G ++  AG 
Sbjct: 35  HVLLEDAPGTGKTTLALALARSLGLKFKRLQLTPDTVASDITGYSAYDPAKGGMVFHAG- 93

Query: 96  LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSR-F 154
             A +TNL     L  DE++R S   +  L  AME+ QL        +   V   L + F
Sbjct: 94  --AAMTNL-----LLADELNRTSGRTQSALLEAMEEGQL--------TVDGVTYPLPKPF 138

Query: 155 TLIAATTRVGLLTN---PLQ--DRFGIPIRLNFYEIEDLKTIV 192
           T+IA    VG       PL   DRF + + L   + E LK ++
Sbjct: 139 TVIATQNPVGTAGTAAIPLSQLDRFMVRLSLGAPDSESLKKLL 181


>gi|225552254|ref|ZP_03773194.1| DNA polymerase III, subunits gamma and tau [Borrelia sp. SV1]
 gi|225371252|gb|EEH00682.1| DNA polymerase III, subunits gamma and tau [Borrelia sp. SV1]
          Length = 560

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 96/228 (42%), Gaps = 25/228 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPR      GQ      LK  IE  K  A A    +F GP G+GKT+ A+  AR L    
Sbjct: 12  RPRDFNSLEGQDFVIETLKHSIEKNKI-ANAY---IFSGPRGVGKTSSARAFARCLNC-- 65

Query: 83  RSTSGPVIAKAGDLAAL--LTNLEDRDVLFIDEIHRLSI-----IVEEILY-PAMEDF-- 132
              +GP +   G+ +    + N    DV+ ID     S+     I EEI++ PA+  +  
Sbjct: 66  --RNGPTVMPCGECSNCKSIENDSSLDVVEIDGASNTSVQDIRQIKEEIMFPPAISKYRI 123

Query: 133 ----QLDLMVGEGPSA--RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
               ++ ++     +A  ++++   +    I ATT    L   ++ R           +E
Sbjct: 124 YIIDEVHMLSNSAFNALLKTIEEPPNYIVFIFATTESHKLPETIKSRCQ-HFSFKLLSLE 182

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
            +  ++++      +   DEA   IA +S G+ R A  L  ++  F +
Sbjct: 183 KIYNMLKKVCLEDDIKYEDEALKWIAYKSSGSVRDAYTLFDQIVSFTD 230


>gi|300703421|ref|YP_003745023.1| ATPase [Ralstonia solanacearum CFBP2957]
 gi|299071084|emb|CBJ42393.1| putative ATPase, AAA family [Ralstonia solanacearum CFBP2957]
          Length = 137

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 56/110 (50%), Gaps = 9/110 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP +++E  GQ       K  +  A A  E    +L+ GPPG+GKTTLA+++A      
Sbjct: 7   LRPHSVDEVIGQRHLLGPGKP-LRVAFASGEPHSMILW-GPPGVGKTTLARLMADAFDAE 64

Query: 82  FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEIL 125
           F + S  V++   D+   +   E       R ++F+DE+HR +  V+  +
Sbjct: 65  FIALSA-VLSGVKDIREAVERAEQFRAHGRRTLVFVDEVHRFNKAVKSFI 113


>gi|282899399|ref|ZP_06307366.1| AAA ATPase, central region protein [Cylindrospermopsis raciborskii
           CS-505]
 gi|281195663|gb|EFA70593.1| AAA ATPase, central region protein [Cylindrospermopsis raciborskii
           CS-505]
          Length = 615

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 55/109 (50%), Gaps = 16/109 (14%)

Query: 26  TLEEFTGQVEACSNLKVFIEA--------AKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +L++  G  +   +LK  I          AK   E    VL VGPPG GKT  A+ +A E
Sbjct: 93  SLKDIGGLSQVVKDLKELIAIPLKRPDLLAKLGLEPTHGVLLVGPPGTGKTLTARALAEE 152

Query: 78  LGVNFRSTSGP-VIAK-AGDLAALLTNLEDRD------VLFIDEIHRLS 118
           LGVN+ +  GP VI+K  G+    L  + ++       ++FIDEI  L+
Sbjct: 153 LGVNYIALVGPEVISKYYGEAEQKLRGIFEKAAKNAPCIIFIDEIDSLA 201



 Score = 42.7 bits (99), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 40/79 (50%), Gaps = 8/79 (10%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLT 101
           + +A A   +L  GPPG GKT LA+ VA +   NF + +GP      V A    +  L T
Sbjct: 389 QTKAVAPRGILLWGPPGTGKTLLAKAVASQARANFIAVNGPELLTRWVGASEQAVRELFT 448

Query: 102 NLEDRD--VLFIDEIHRLS 118
                D  V+FIDEI  L+
Sbjct: 449 KARQADPCVIFIDEIDTLA 467


>gi|261403322|ref|YP_003247546.1| AAA family ATPase, CDC48 subfamily [Methanocaldococcus vulcanius
           M7]
 gi|261370315|gb|ACX73064.1| AAA family ATPase, CDC48 subfamily [Methanocaldococcus vulcanius
           M7]
          Length = 903

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 48/109 (44%), Gaps = 16/109 (14%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
           T E+  G  E    ++  IE      E  +         VL VGPPG GKT LA+ VA E
Sbjct: 177 TYEDIGGLKEEVKKVREMIELPMRHPELFEKLGIEPPKGVLLVGPPGTGKTLLAKAVANE 236

Query: 78  LGVNFRSTSGPVIAKA------GDLAALLTNLEDR--DVLFIDEIHRLS 118
            G NF   +GP I          +L  +    E+    ++FIDE+  ++
Sbjct: 237 AGANFYVINGPEIMSKYVGETEENLRKIFEEAEENAPSIIFIDELDAIA 285



 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 21/34 (61%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL  GPPG GKT LA+ VA E G NF S  GP I
Sbjct: 489 VLLFGPPGTGKTLLAKAVANESGANFISVKGPEI 522


>gi|207742683|ref|YP_002259075.1| hypothetical protein RSIPO_00874 [Ralstonia solanacearum IPO1609]
 gi|206594077|emb|CAQ61004.1| hypothetical protein RSIPO_00874 [Ralstonia solanacearum IPO1609]
          Length = 137

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 9/110 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP +++E  GQ       K  +  A A  E    +L+ GPPG+GKTTLA+++A      
Sbjct: 7   LRPHSVDEVIGQRHLLGQGKP-LRVAFASGEPHSMILW-GPPGVGKTTLARLMADAFDAE 64

Query: 82  FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEIL 125
           F + S  V++   D+   +   E       R ++F+DE+HR +  V   +
Sbjct: 65  FIALSA-VLSGVKDIREAVERAEQFRAHGRRTLVFVDEVHRFNKAVNHYI 113


>gi|269925653|ref|YP_003322276.1| ATP-dependent protease La [Thermobaculum terrenum ATCC BAA-798]
 gi|269789313|gb|ACZ41454.1| ATP-dependent protease La [Thermobaculum terrenum ATCC BAA-798]
          Length = 808

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 32/162 (19%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           + FVGPPG+GKT+L Q +AR LG  F R + G +  +A              G +   + 
Sbjct: 379 LCFVGPPGVGKTSLGQSIARALGRKFIRMSLGGIRDEAEIRGHRRTYIGAMPGRIIQGMR 438

Query: 102 NLEDRDVLF-IDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLS 152
            +  +D +F +DEI ++++  +        E+L PA     +D  +G       V  +LS
Sbjct: 439 RVGTKDPVFMLDEIDKITVGFQGDPAAALLEVLDPAQNHSFVDNYLG-------VPFDLS 491

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           +   IA    +  +  PL DR  + I+++ Y  ++   I QR
Sbjct: 492 QVLFIATANTLDTIPAPLLDRMEV-IQISGYTEQEKLFIAQR 532


>gi|148655982|ref|YP_001276187.1| ATPase central domain-containing protein [Roseiflexus sp. RS-1]
 gi|148568092|gb|ABQ90237.1| AAA ATPase, central domain protein [Roseiflexus sp. RS-1]
          Length = 660

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 12/70 (17%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA----GDLAALLTNLEDRD----- 107
           VL +GPPG GK+ +AQ VA E GV F   S P +  A    G++  +L   + R      
Sbjct: 153 VLLIGPPGTGKSYMAQAVATEAGVPFGYLSAPSLTSAWMGMGNMKVMLLYRKARKLAREY 212

Query: 108 ---VLFIDEI 114
              +LFIDEI
Sbjct: 213 GACILFIDEI 222


>gi|312110107|ref|YP_003988423.1| MgsA AAA+ ATPase-like protein [Geobacillus sp. Y4.1MC1]
 gi|311215208|gb|ADP73812.1| MgsA AAA+ ATPase-like protein [Geobacillus sp. Y4.1MC1]
          Length = 431

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 11/114 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR ++E  GQ           +  K     +  +L  G PG+GKT+LA  +A  +  +
Sbjct: 12  MRPRNIDEIVGQQHIIGPHTALYKMIKN--GHVPSLLLYGEPGVGKTSLAHAIAGTVQRD 69

Query: 82  FRSTSGPVIAKAG-----DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           F + +     K       + A L  N+    +LFIDEIHR +   ++ L P +E
Sbjct: 70  FFAINATASGKKEMEEVVETAKLTGNV----ILFIDEIHRFNKAQQDYLLPHIE 119


>gi|224000545|ref|XP_002289945.1| replication factor C 37 KD subunit [Thalassiosira pseudonana
          CCMP1335]
 gi|220975153|gb|EED93482.1| replication factor C 37 KD subunit [Thalassiosira pseudonana
          CCMP1335]
          Length = 346

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP++L++ + Q E  S LK  +E  +     L H+LF GPPG GKT++A  + R+L
Sbjct: 22 RPKSLQDVSHQGEIISTLKNAVETNR-----LPHLLFYGPPGTGKTSVALALCRQL 72


>gi|123482551|ref|XP_001323818.1| ATPase, AAA family protein [Trichomonas vaginalis G3]
 gi|121906690|gb|EAY11595.1| ATPase, AAA family protein [Trichomonas vaginalis G3]
          Length = 325

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 35/62 (56%), Gaps = 6/62 (9%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81
          RP+ L++   Q EA   LK  +E        L H++F GPPG GKT+LA  + R L G +
Sbjct: 15 RPKNLDDIVQQEEAVKALKTTLETGD-----LPHLIFHGPPGTGKTSLALALCRSLFGDD 69

Query: 82 FR 83
          FR
Sbjct: 70 FR 71


>gi|307212720|gb|EFN88396.1| ATPase WRNIP1 [Harpegnathos saltator]
          Length = 562

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 62/135 (45%), Gaps = 15/135 (11%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG-- 79
           +RP +L  F GQ        +  E  + + E  + +L+ GPPG GKT+LA V+A      
Sbjct: 122 MRPTSLLNFIGQEHILGPHTMLSELLQ-KGEIPNMILW-GPPGCGKTSLANVIAHRCKND 179

Query: 80  -------VNFRSTSGPV--IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
                  V   +    V  + +   +AA       R ++F+DEIHR + + +++  P +E
Sbjct: 180 ASHKLRYVKLSAAMAGVQEVKEVISVAANHVKYAQRTIVFMDEIHRFNKMQQDVFLPHVE 239

Query: 131 DFQLDLM--VGEGPS 143
              + L+    E PS
Sbjct: 240 SGSITLIGATTENPS 254


>gi|167769902|ref|ZP_02441955.1| hypothetical protein ANACOL_01243 [Anaerotruncus colihominis DSM
           17241]
 gi|167667893|gb|EDS12023.1| hypothetical protein ANACOL_01243 [Anaerotruncus colihominis DSM
           17241]
          Length = 421

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 68/146 (46%), Gaps = 16/146 (10%)

Query: 22  LRPRTLEEFTGQVEACSNLKVF---IEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP+TL++  GQ       KV    +E+       + +++F GP G+GKTT+A ++A+  
Sbjct: 9   IRPQTLDDVVGQEHLLGRDKVLRRMVESGN-----IPNLIFYGPSGVGKTTVASIIAKRA 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRD-----VLFIDEIHRLSIIVEEILYPAMEDFQ 133
           G      +G   A   D+  ++      D     +L++DEI  L+   ++ L   +E+  
Sbjct: 64  GKKLCKLNG-TTASTSDIRDVVGETNTIDGIGGVILYLDEIQYLNKKQQQTLLEFIENGS 122

Query: 134 LDLMVG--EGPSARSVKINLSRFTLI 157
           + L+    E P        LSR T+ 
Sbjct: 123 ITLIASTTENPYFYVYNAVLSRSTVF 148


>gi|332027158|gb|EGI67251.1| Nuclear valosin-containing protein-like protein [Acromyrmex
           echinatior]
          Length = 942

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E G+NF S  GP
Sbjct: 677 VLLCGPPGCGKTLLAKAVANEAGINFISVKGP 708



 Score = 37.0 bits (84), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 8/65 (12%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDRD------VL 109
           L  GPPG GKT LA  VA EL +     +GP  V   +G+  A +  L ++       ++
Sbjct: 315 LLHGPPGCGKTLLAHAVAGELNIPLIKVAGPELVTGVSGESEARIRELFEQALILAPCII 374

Query: 110 FIDEI 114
           F+DEI
Sbjct: 375 FLDEI 379


>gi|73975782|ref|XP_860539.1| PREDICTED: similar to peroxisome biogenesis factor 1 isoform 3
           [Canis familiaris]
          Length = 1227

 Score = 46.2 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/32 (65%), Positives = 23/32 (71%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA V+ARE G+NF S  GP
Sbjct: 821 VLLYGPPGTGKTLLAGVIARESGMNFISVKGP 852


>gi|218283047|ref|ZP_03489149.1| hypothetical protein EUBIFOR_01735 [Eubacterium biforme DSM 3989]
 gi|218216241|gb|EEC89779.1| hypothetical protein EUBIFOR_01735 [Eubacterium biforme DSM 3989]
          Length = 604

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 55/105 (52%), Gaps = 15/105 (14%)

Query: 25  RTLEEFTGQVEACSNLKVFIE----AAKAR---AEALDHVLFVGPPGLGKTTLAQVVARE 77
           +T  +  GQ EA  NL+  ++     AK +   A+     L VGPPG GKT LA+ VA E
Sbjct: 151 KTFNDVAGQEEAKENLQEIVDFLNNPAKYKEIGAKMPKGALLVGPPGTGKTLLAKAVAGE 210

Query: 78  LGVNFRSTSGPVIAK--AGDLAALLTNL--EDRD----VLFIDEI 114
            GV F S SG    +   G  AA + +L  + R+    ++FIDEI
Sbjct: 211 AGVPFFSISGSEFVEMFVGRGAAKVRDLFKQAREKAPCIVFIDEI 255


>gi|295399332|ref|ZP_06809314.1| AAA ATPase central domain protein [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|294978798|gb|EFG54394.1| AAA ATPase central domain protein [Geobacillus thermoglucosidasius
           C56-YS93]
          Length = 431

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 11/114 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR ++E  GQ           +  K     +  +L  G PG+GKT+LA  +A  +  +
Sbjct: 12  MRPRNIDEIVGQQHIIGPHTALYKMIKN--GHVPSLLLYGEPGVGKTSLAHAIAGTVQRD 69

Query: 82  FRSTSGPVIAKAG-----DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           F + +     K       + A L  N+    +LFIDEIHR +   ++ L P +E
Sbjct: 70  FFAINATASGKKEMEEVVETAKLTGNV----ILFIDEIHRFNKAQQDYLLPHIE 119


>gi|315230688|ref|YP_004071124.1| replication factor C small subunit [Thermococcus barophilus MP]
 gi|315183716|gb|ADT83901.1| replication factor C small subunit [Thermococcus barophilus MP]
          Length = 326

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 6/64 (9%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81
          RP+ L++  GQ      LK +++       ++ H+LF GPPG+GKTT A  + REL G +
Sbjct: 20 RPQRLDDIVGQDHIVKRLKHYVKTG-----SMPHLLFAGPPGVGKTTAALCLTRELFGEH 74

Query: 82 FRST 85
          +R  
Sbjct: 75 WRHN 78


>gi|68490447|ref|XP_710951.1| hypothetical protein CaO19.3211 [Candida albicans SC5314]
 gi|46432214|gb|EAK91709.1| hypothetical protein CaO19.3211 [Candida albicans SC5314]
 gi|238882781|gb|EEQ46419.1| activator 1 40 kDa subunit [Candida albicans WO-1]
          Length = 361

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 7/64 (10%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL--GV 80
          RP +LEE  GQ E    ++ F+E  K     L H+LF GP G GKT+    +A+E+    
Sbjct: 30 RPDSLEEVKGQQEIVDTVRKFVETGK-----LPHLLFYGPSGTGKTSTIIALAKEIYGAT 84

Query: 81 NFRS 84
          N+++
Sbjct: 85 NYKN 88


>gi|111115291|ref|YP_709909.1| DNA polymerase III subunits gamma and tau [Borrelia afzelii PKo]
 gi|110890565|gb|ABH01733.1| DNA polymerase III, subunits gamma and tau [Borrelia afzelii PKo]
          Length = 566

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 95/228 (41%), Gaps = 27/228 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAK-ARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           RPR      GQ      LK  IE  K A A      +F GP G+GKT+ A+  AR L   
Sbjct: 12  RPRDFNSLEGQDFVVETLKHSIEKNKIANA-----YIFSGPRGVGKTSSARAFARCLNC- 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSI-----IVEEILY-PAMEDF- 132
               +GP +   G+ +   +   D   DV+ ID     S+     I EEI++ PA+  + 
Sbjct: 66  ---KNGPTVMPCGECSNCKSIESDSSLDVIEIDGASNTSVQDIRQIKEEIMFPPAISKYR 122

Query: 133 -----QLDLMVGEGPSA--RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
                ++ ++     +A  ++++   +    I ATT    L   ++ R           +
Sbjct: 123 IYIIDEVHMLSNSAFNALLKTIEEPPNYIVFIFATTESHKLPETIKSRCQ-HFSFKLLSL 181

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
           E +  ++++      +   DEA   IA +S G+ R A  L  +V  F 
Sbjct: 182 EKIYNMLKKVCFEDHIKYEDEALKWIAYKSSGSVRDAYTLFDQVVSFT 229


>gi|157103169|ref|XP_001647852.1| peroxisome assembly factor-2 (peroxisomal-type atpase 1) [Aedes
           aegypti]
 gi|108884684|gb|EAT48909.1| peroxisome assembly factor-2 (peroxisomal-type atpase 1) [Aedes
           aegypti]
          Length = 940

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E G+NF S  GP
Sbjct: 693 VLLCGPPGCGKTLLAKAVANEAGINFISVKGP 724


>gi|332019575|gb|EGI60054.1| ATPase WRNIP1 [Acromyrmex echinatior]
          Length = 393

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 13/99 (13%)

Query: 57  VLFVGPPGLGKTTLAQVVA---RELG------VNFRSTSGPV--IAKAGDLAALLTNLED 105
           ++F GPPG GKT+LA ++A   R+L       VN  + S  V  I  A  +A   +    
Sbjct: 34  MIFWGPPGCGKTSLANIIACLSRKLTSNNVHIVNLSAASSGVKSIKDAVTMAKDKSKFGC 93

Query: 106 RDVLFIDEIHRLSIIVEEILYPAME--DFQLDLMVGEGP 142
           R ++F+DEIH  + + ++I  P +E   F L     E P
Sbjct: 94  RTIVFMDEIHCFNKLQQDIFLPHIEIGTFTLIGCTTENP 132


>gi|239623657|ref|ZP_04666688.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239521688|gb|EEQ61554.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 439

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 62/136 (45%), Gaps = 28/136 (20%)

Query: 17  ADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEAL---------DHVLFVGP 62
           ADI LL+P+ ++ F      GQ EA   L V +     R  +           ++L VGP
Sbjct: 63  ADIRLLKPKEIKTFLDEYVIGQDEAKKVLSVAVYNHYKRVTSCQNMDVDVQKSNILMVGP 122

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---EDRD-------V 108
            G GKT LAQ +A+ L V F       + +AG    D+  +L  L    D D       +
Sbjct: 123 TGSGKTYLAQTLAKILNVPFAIADATALTEAGYVGEDVENILLKLIQSADYDISRAEYGI 182

Query: 109 LFIDEIHRLSIIVEEI 124
           ++IDEI +++   E +
Sbjct: 183 IYIDEIDKITKKSENV 198


>gi|149193820|ref|ZP_01870918.1| putative atp-dependent protease la protein [Caminibacter
           mediatlanticus TB-2]
 gi|149135773|gb|EDM24251.1| putative atp-dependent protease la protein [Caminibacter
           mediatlanticus TB-2]
          Length = 774

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 110/260 (42%), Gaps = 54/260 (20%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFI---EAAKARAEALD--HVLFVGPPGL 65
           N ++E+ DI+ L+ R  ++  G  +    +  +    E AK R E      + FVGPPG+
Sbjct: 297 NYAKEEFDINELKERLDKDHYGLKKPKERIIEYFGAKELAKKRGEEFSGATLCFVGPPGV 356

Query: 66  GKTTLAQVVARELGVNF------------------RSTSGPVIAKAGDLAALLTNLEDRD 107
           GKT+LA  +A+ L  N                   R+  G   A  G +A  + N +  +
Sbjct: 357 GKTSLANSIAKALDKNLVRIALGGLEDVNELRGHRRTYIG---AMPGRIAQGIINAKQMN 413

Query: 108 -VLFIDEIHRLS-------IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA 159
            V+ +DEI ++S        ++ E+L P       DL +       +  ++LS+   IA 
Sbjct: 414 PVIVLDEIDKISRYRGDPTAVLLEVLDPEQNSHFRDLYL-------NFDLDLSKVLFIAT 466

Query: 160 TTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR----------GAKLTGLAVTDEAAC 209
                 +  PL+DR  + I +  Y  ++   I +R            K + +++TD A  
Sbjct: 467 ANDPSTIPAPLRDRMEM-IFVGSYTPQEKFEIAKRYLIPQEMKKHSLKKSEISITDAALR 525

Query: 210 EIAMRSRGTPRIAGRLLRRV 229
           EI    + T     R LRR+
Sbjct: 526 EII--DKYTKEAGVRNLRRI 543


>gi|115380280|ref|ZP_01467294.1| ATP-dependent protease La [Stigmatella aurantiaca DW4/3-1]
 gi|115362709|gb|EAU61930.1| ATP-dependent protease La [Stigmatella aurantiaca DW4/3-1]
          Length = 684

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 97/230 (42%), Gaps = 52/230 (22%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA---GDLAALLTNLEDR------ 106
           +  VGPPG+GKT+L Q VAR  G  F R + G V  +A   G     +  L  R      
Sbjct: 375 LCLVGPPGVGKTSLGQSVARATGRKFVRLSLGGVRDEAEIRGHRRTYVGALPGRFIQSMK 434

Query: 107 ------DVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152
                  V+ +DEI +L        S  + E+L P   +   D  +        V  +LS
Sbjct: 435 KSGMKNPVMMLDEIDKLGADFRGDPSAALLEVLDPEQNNTFSDHYL-------DVPFDLS 487

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI-----VQRGAKLTGLA----- 202
           +   IA   ++  +  PL+DR  I I L  Y  E+ ++I     V +  K  GL+     
Sbjct: 488 KVMFIATANQLDPIPGPLRDRMEI-IELTGYTFEEKQSIARIHLVPKQLKEHGLSTDHID 546

Query: 203 VTDEAACEIAMRSRGTPRIAG--RLLRRVRDFA-----EVAHAKTITREI 245
           VTDEA   +   +    R AG   L RR+ D       EVA  KT  + I
Sbjct: 547 VTDEALLTL---TTSYTREAGVRNLERRIADLCRAVAVEVAGGKTEKQTI 593


>gi|307206357|gb|EFN84409.1| Nuclear valosin-containing protein-like [Harpegnathos saltator]
          Length = 861

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E G+NF S  GP
Sbjct: 604 VLLCGPPGCGKTLLAKAVANEAGINFISVKGP 635


>gi|26988176|ref|NP_743601.1| ATP-dependent protease La [Pseudomonas putida KT2440]
 gi|24982911|gb|AAN67065.1|AE016335_5 ATP-dependent protease La [Pseudomonas putida KT2440]
          Length = 805

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 79/189 (41%), Gaps = 50/189 (26%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAKAGDLAALLT 101
           VL VGPPG+GKT++ + +A  LG  F   S                 + A+ G L   L 
Sbjct: 387 VLLVGPPGVGKTSIGKSIAESLGRPFYRFSVGGMRDEAEIKGHRRTYIGAQPGKLVQALK 446

Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAME----DFQLDLMVGEGPSARSVK 148
           ++E  + V+ +DEI ++    +        E L P       D  LDL           +
Sbjct: 447 DVEVMNPVIMLDEIDKMGQSYQGDPASALLETLDPEQNVDFLDHYLDL-----------R 495

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR----------GAKL 198
           ++LS+   +     +  +  PL DR  + IRL+ Y  E+  TI +R          G   
Sbjct: 496 LDLSKVLFVCTANTLDSIPGPLLDRMEV-IRLSGYITEEKMTIAKRHLWPKQLEKAGVSK 554

Query: 199 TGLAVTDEA 207
           T L+++D A
Sbjct: 555 TSLSISDSA 563


>gi|118347942|ref|XP_001007447.1| AAA family ATPase, CDC48 subfamily protein [Tetrahymena
           thermophila]
 gi|89289214|gb|EAR87202.1| AAA family ATPase, CDC48 subfamily protein [Tetrahymena thermophila
           SB210]
          Length = 839

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 8/71 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ VA E   NF S  GP +     G+  A +  + D+       V
Sbjct: 549 VLFYGPPGCGKTLLAKAVANECSANFISIKGPELLTMWFGESEANVREVFDKARAAAPCV 608

Query: 109 LFIDEIHRLSI 119
           LF DE+  +++
Sbjct: 609 LFFDELDSVAV 619



 Score = 39.3 bits (90), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLEDRD--V 108
           VL  GPPG GKT +A+ VA E G  F   +GP I         G+L       E     +
Sbjct: 276 VLLFGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGEAEGNLRKAFEEAEKNSPAI 335

Query: 109 LFIDEIHRLS 118
           +FIDE+  ++
Sbjct: 336 IFIDELDSIA 345


>gi|161527613|ref|YP_001581439.1| ATPase AAA [Nitrosopumilus maritimus SCM1]
 gi|160338914|gb|ABX12001.1| AAA family ATPase, CDC48 subfamily [Nitrosopumilus maritimus SCM1]
          Length = 722

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 44/81 (54%), Gaps = 8/81 (9%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL--EDRD 107
           EA   VL  GPPG GKT LA+ VA E   +F S SGP I     G+  A L  +  E R+
Sbjct: 209 EAPKGVLLYGPPGTGKTLLAKAVANESNAHFISISGPEIMSKFYGESEARLREIFKEARE 268

Query: 108 ----VLFIDEIHRLSIIVEEI 124
               ++F+DEI  ++   EE+
Sbjct: 269 KAPSIIFVDEIDSIAPKREEV 289


>gi|42559517|sp|Q975D4|RFCL_SULTO RecName: Full=Replication factor C large subunit; Short=RFC large
          subunit; AltName: Full=Clamp loader large subunit
          Length = 440

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 32/55 (58%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
          RP+TL E   + +A   L  +IE+          VL  GPPG+GKTTLA+ +AR+
Sbjct: 10 RPKTLNEVENEEDAKKELVEWIESWLKGKPNYKAVLLYGPPGVGKTTLAEALARD 64


>gi|325972845|ref|YP_004249036.1| DNA polymerase III subunits gamma and tau [Spirochaeta sp. Buddy]
 gi|324028083|gb|ADY14842.1| DNA polymerase III, subunits gamma and tau [Spirochaeta sp. Buddy]
          Length = 543

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 109/253 (43%), Gaps = 31/253 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+  +   GQ    S +K  IE  +     + H  LF GP G+GKT+ A+++AR L   
Sbjct: 11  RPQIFDNLVGQEFVVSTIKHAIEQGR-----IAHAYLFSGPRGVGKTSSARILARALNCE 65

Query: 82  FRSTSGPVIAKAGDLAAL--LTNLEDRDVLFIDEIHRLSI-----IVEEILYPAMEDFQL 134
                GP     G  +    +T   + DV+ ID     S+     I +E+L+P       
Sbjct: 66  ----QGPTATPCGVCSNCKEITQGNNVDVIEIDGASNTSVNDIRQIKDEVLFPPQASKYK 121

Query: 135 DLMVGE----GPSA-----RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             ++ E      SA     ++++   +    I ATT +  +   ++ R          ++
Sbjct: 122 IYIIDEVHMLSTSAFNALLKTIEEPPAYIIFIFATTELQKVPATIRSRCQ-QFHFQLIDL 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           + +K+ +   AK   +A  ++A   IA  S G+ R A  L  +V  F++  H   IT E 
Sbjct: 181 DLIKSCLSEAAKEMEVAADEDALFWIAKESTGSMRDAYTLFDQVVSFSQ-GH---ITMEK 236

Query: 246 ADAALLRLAIDKM 258
             + L  + ID++
Sbjct: 237 ISSKLGLVGIDQI 249


>gi|300870618|ref|YP_003785489.1| DNA polymerase III subunits gamma and tau [Brachyspira pilosicoli
           95/1000]
 gi|300688317|gb|ADK30988.1| DNA polymerase III, subunits gamma and tau [Brachyspira pilosicoli
           95/1000]
          Length = 521

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 101/245 (41%), Gaps = 45/245 (18%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T EE  GQ      +   I A K  A A    LF G  G+GKT+LA+++A+ L    
Sbjct: 13  RPQTFEEVIGQEHITKTISKSI-AQKKIAHAY---LFSGAHGVGKTSLARIIAKALNC-- 66

Query: 83  RSTSGPVIAKAGDLAALLTNLED---RDVLFID--------------EIHRLS------- 118
              +GP     G +    T +E+    DV+ ID              E  R+S       
Sbjct: 67  --VNGPTDKPCG-VCPSCTQIENGTPLDVIEIDGASNRGIENIRTIIENVRISPVAGKYK 123

Query: 119 -IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             I++E+     E F   L   E P A  V         I ATT    +   ++ R    
Sbjct: 124 VYIIDEVHQITNEAFNALLKTLEEPPAHVV--------FILATTEADRVLPTIRSRCQQY 175

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
           I      IEDL+ I++       +A  DEA   IA ++RG+ R +  +L ++   A  A 
Sbjct: 176 I-FKSLGIEDLEKILKGILDKENIAYDDEAIFLIAKQARGSVRDSETILEKM--IAYTAD 232

Query: 238 AKTIT 242
            K IT
Sbjct: 233 KKHIT 237


>gi|182625717|ref|ZP_02953486.1| ATPase, AAA family [Clostridium perfringens D str. JGS1721]
 gi|177909119|gb|EDT71594.1| ATPase, AAA family [Clostridium perfringens D str. JGS1721]
          Length = 418

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 71/150 (47%), Gaps = 14/150 (9%)

Query: 21  LLRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           ++RP+ LE+  GQ   V   + L   I     + + + + +F GPPG+GKTTLA +++  
Sbjct: 10  IMRPKKLEDIVGQKHIVGEGTPLNKLI-----KNKNIMNCIFYGPPGVGKTTLANIISNY 64

Query: 78  LGVNFRSTSGPV--IAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQ 133
               F   +     I +   + + + NL +    +L+IDE+   +   ++ L   +ED +
Sbjct: 65  TDKKFYKINATTSSIKEIQSITSDIDNLLNFKGIILYIDELQHFNKKQQQALLEFIEDGR 124

Query: 134 LDLMVG--EGPSARSVKINLSRFTLIAATT 161
           + L+    E P     K  LSR T+    T
Sbjct: 125 VILIASTTENPYFAIHKAILSRSTIFQFKT 154


>gi|150403099|ref|YP_001330393.1| AAA family ATPase [Methanococcus maripaludis C7]
 gi|150034129|gb|ABR66242.1| AAA family ATPase, CDC48 subfamily [Methanococcus maripaludis C7]
          Length = 800

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 46/105 (43%), Gaps = 16/105 (15%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
           T E+  G  E    ++  +E      E  +         VL  GPPG GKT LA+ VA E
Sbjct: 175 TYEDIGGLKEEVKKIREMVELPMRHPELFEKLGIEPPKGVLLAGPPGTGKTLLAKAVANE 234

Query: 78  LGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DVLFIDEI 114
            G NF + +GP      V     +L  +    E+    ++FIDEI
Sbjct: 235 AGANFYTINGPELMSKYVGETEENLRKIFEEAEENSPSIIFIDEI 279



 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 20/34 (58%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL  GPPG GKT LA+ VA E   NF S  GP I
Sbjct: 560 VLLFGPPGTGKTLLAKAVANESEANFISVKGPEI 593


>gi|15897670|ref|NP_342275.1| replication factor C small subunit [Sulfolobus solfataricus P2]
 gi|284174995|ref|ZP_06388964.1| replication factor C small subunit [Sulfolobus solfataricus 98/2]
 gi|42559539|sp|Q9UXF5|RFCS_SULSO RecName: Full=Replication factor C small subunit; Short=RFC small
          subunit; AltName: Full=Clamp loader small subunit;
          AltName: Full=SsoRFC small subunit
 gi|6015708|emb|CAB57535.1| activator 1, replication factor C, small subunit [Sulfolobus
          solfataricus P2]
 gi|13813941|gb|AAK41065.1| Activator 1, replication factor C, small subunit (rfc)
          [Sulfolobus solfataricus P2]
 gi|261602438|gb|ACX92041.1| Replication factor C [Sulfolobus solfataricus 98/2]
          Length = 330

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 6/61 (9%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81
          RP+TL++   Q E    LK F+     + + + H+LF GPPG GKTT A  +  +L G N
Sbjct: 15 RPKTLDDIVNQREIIDRLKKFV-----KEKNMPHLLFAGPPGTGKTTAALALVHDLYGDN 69

Query: 82 F 82
          +
Sbjct: 70 Y 70


>gi|167761298|ref|ZP_02433425.1| hypothetical protein CLOSCI_03703 [Clostridium scindens ATCC 35704]
 gi|167660964|gb|EDS05094.1| hypothetical protein CLOSCI_03703 [Clostridium scindens ATCC 35704]
          Length = 419

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 28/130 (21%)

Query: 17  ADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEAL---------DHVLFVGP 62
           ADI+LL+P  ++EF      GQ EA   L V +     R  A           ++L +GP
Sbjct: 61  ADINLLKPEEIKEFLDEYVIGQEEAKKVLSVAVYNHYKRIMAQKDMGVELNKSNILMLGP 120

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRD-------V 108
            G GKT LAQ +A+ L V F       + +AG +   + N+        D D       +
Sbjct: 121 TGCGKTLLAQSLAKILNVPFAIADATALTEAGYVGEDVENILLKIIQAADGDIERAEYGI 180

Query: 109 LFIDEIHRLS 118
           ++IDEI +++
Sbjct: 181 IYIDEIDKIT 190


>gi|307353811|ref|YP_003894862.1| AAA family ATPase [Methanoplanus petrolearius DSM 11571]
 gi|307157044|gb|ADN36424.1| AAA family ATPase, CDC48 subfamily [Methanoplanus petrolearius DSM
           11571]
          Length = 831

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 39/75 (52%), Gaps = 8/75 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DV 108
           VL  GPPG GKT +A+ VA E+  NF + SGP I         G L  +    E+    +
Sbjct: 219 VLLYGPPGTGKTLIAKAVANEVDANFITLSGPEIMSKYYGESEGKLREVFEQAEENAPTI 278

Query: 109 LFIDEIHRLSIIVEE 123
           +FIDEI  ++   EE
Sbjct: 279 IFIDEIDSIAPKREE 293



 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDR------DV 108
           +L  GPPG GKT LA+ VA +  VNF S  GP +++K  G+    + N+  R       +
Sbjct: 525 ILLFGPPGTGKTLLAKAVANKSEVNFISVKGPELLSKWVGESEKGIRNIFRRARQAAPSI 584

Query: 109 LFIDEIHRL 117
           +F DEI  L
Sbjct: 585 IFFDEIDAL 593


>gi|304437862|ref|ZP_07397810.1| lon family ATP-dependent protease [Selenomonas sp. oral taxon 149
           str. 67H29BP]
 gi|304369162|gb|EFM22839.1| lon family ATP-dependent protease [Selenomonas sp. oral taxon 149
           str. 67H29BP]
          Length = 718

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 8/79 (10%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV---A 75
           + LLRP+T +E  GQ  A  +L      AK  +    H+L  GPPG+GKTT A++V   A
Sbjct: 170 MELLRPKTFDEIVGQERAVRSL-----MAKLSSPYPQHLLLYGPPGVGKTTAARLVLEAA 224

Query: 76  RELGVNFRSTSGPVIAKAG 94
           ++  V+  + + P +   G
Sbjct: 225 KKRAVSPFAETAPFVETDG 243


>gi|118577136|ref|YP_876879.1| AAA ATPase [Cenarchaeum symbiosum A]
 gi|118195657|gb|ABK78575.1| AAA ATPase [Cenarchaeum symbiosum A]
          Length = 728

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 44/81 (54%), Gaps = 8/81 (9%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL--EDRD 107
           EA   VL  GPPG GKT LA+ VA E   +F S SGP I     G+  A L  +  E R+
Sbjct: 209 EAPKGVLLYGPPGTGKTLLAKAVANESNAHFISISGPEIMSKFYGESEARLREIFKEARE 268

Query: 108 ----VLFIDEIHRLSIIVEEI 124
               ++F+DEI  ++   EE+
Sbjct: 269 KAPSIIFVDEIDSIAPKREEV 289


>gi|13541778|ref|NP_111466.1| ATPase of the AAA+ class involved in cell division [Thermoplasma
           volcanium GSS1]
 gi|14325192|dbj|BAB60117.1| cell cycle control protein 48 [Thermoplasma volcanium GSS1]
          Length = 745

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 8/76 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DV 108
           V+  GPPG GKT +A+ VA E G NF S +GP I           L  + +  E+    +
Sbjct: 227 VILYGPPGTGKTLIARAVANESGANFLSINGPEIMSKYYGQSEQKLREIFSKAEETAPSI 286

Query: 109 LFIDEIHRLSIIVEEI 124
           +FIDEI  ++   EE+
Sbjct: 287 IFIDEIDSIAPKREEV 302



 Score = 40.0 bits (92), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 18/33 (54%), Positives = 21/33 (63%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           L  GPPG+GKT LA+ VA E   NF S  GP +
Sbjct: 505 LLYGPPGVGKTLLAKAVATESNANFISIKGPEV 537


>gi|301118150|ref|XP_002906803.1| ATPase [Phytophthora infestans T30-4]
 gi|262108152|gb|EEY66204.1| ATPase [Phytophthora infestans T30-4]
          Length = 581

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 98/222 (44%), Gaps = 45/222 (20%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTS-GPVIAK-AGD----LAALLTNLEDRD--V 108
           VLF GPPG GKT  A+++A++ G+         V++K  GD    ++A+    E  D  +
Sbjct: 362 VLFEGPPGTGKTLSARIIAQQAGIPMIHIPIESVVSKWYGDSEKKMSAIFDACEKLDGAI 421

Query: 109 LFIDEI------------HRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTL 156
           +FIDEI            H  S  +  +L   +E F                 +  + T+
Sbjct: 422 IFIDEIDALAGDRSGGTMHEASRRILSVLLQKVEGF----------------ASAKKTTV 465

Query: 157 IAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSR 216
           + AT R   L   L  RF + IR N  + +  + +  R AK     ++DE   ++A  S 
Sbjct: 466 VCATNRKQDLDAALISRFDLSIRYNLPDEKTRRAVFGRYAK----QLSDEELSQLAAVS- 520

Query: 217 GTPRIAGRLLRRVRDFAEVAHAKTITR--EIADAALLRLAID 256
              +++ R ++ + ++AE   A  + +  E A+   LR  ++
Sbjct: 521 --SQLSCRDIKEICEYAERKWASKVLKKEETAELPTLRTYME 560


>gi|297473582|ref|XP_002686698.1| PREDICTED: peroxisomal biogenesis factor 1 [Bos taurus]
 gi|296488689|gb|DAA30802.1| peroxisomal biogenesis factor 1 [Bos taurus]
          Length = 1254

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 21/32 (65%), Positives = 23/32 (71%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA V+ARE G+NF S  GP
Sbjct: 876 VLLYGPPGTGKTLLAGVIARESGMNFISVKGP 907


>gi|288817487|ref|YP_003431834.1| ATP-dependent protease La [Hydrogenobacter thermophilus TK-6]
 gi|288786886|dbj|BAI68633.1| ATP-dependent protease La [Hydrogenobacter thermophilus TK-6]
 gi|308751094|gb|ADO44577.1| ATP-dependent protease La [Hydrogenobacter thermophilus TK-6]
          Length = 792

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 86/210 (40%), Gaps = 45/210 (21%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAK 92
           K +  A+  + FVGPPG+GKT+L + +A  LG  F   S                 V A 
Sbjct: 357 KGKKSAVQILCFVGPPGVGKTSLGKSIAESLGRKFVRISLGGIRDEAEIRGHRRTYVGAM 416

Query: 93  AGDLAALLTNLEDRDVLFI-DEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPS 143
            G +   +     ++ L + DE+ ++SI  +        E+L P      +DL +G    
Sbjct: 417 PGRIIQAIKQAGTKNPLIVLDEVDKISISFQGDPAAALLEVLDPEQNKNFVDLYIG---- 472

Query: 144 ARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR--------- 194
              +  +LS    I    R+  +  PL DR  + I L  Y  E+   I +          
Sbjct: 473 ---MPFDLSDVFFICTANRIDTIPRPLLDRMEV-ISLAGYSEEEKVFIAKNHLLPKLLPL 528

Query: 195 -GAKLTGLAVTDEAACEIAMRSRGTPRIAG 223
            G K   +A++D+A  E+    RG  R +G
Sbjct: 529 HGFKDDEVALSDDAILEVI---RGYTRESG 555


>gi|124361200|gb|ABN09172.1| hypothetical protein MtrDRAFT_AC183371g22v1 [Medicago truncatula]
          Length = 92

 Score = 46.2 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/34 (61%), Positives = 25/34 (73%)

Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
          VL  GPPG GKT+LAQ+ A + GVNF S +GP I
Sbjct: 16 VLLHGPPGTGKTSLAQLCAHDAGVNFFSINGPEI 49


>gi|4098493|gb|AAD00283.1| hypothetical protein [Streptococcus mutans]
          Length = 237

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 16/97 (16%)

Query: 51  AEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPV--------IAKAGDLAALLTN 102
           A  L  ++  GPPG+GKT++A  +A      FR+ +           IA+    +  L  
Sbjct: 4   ANRLSSMILYGPPGIGKTSIASAIAGTTKFAFRTFNATTDTKKRLQEIAEEAKFSGGL-- 61

Query: 103 LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
                VL +DEIHRL    ++ L P +E+ Q+ +M+G
Sbjct: 62  -----VLLLDEIHRLDKTKQDFLLPLLENGQI-IMIG 92


>gi|51894450|ref|YP_077141.1| Lon-like ATP-dependent protease [Symbiobacterium thermophilum IAM
           14863]
 gi|51858139|dbj|BAD42297.1| Lon-like ATP-dependent protease [Symbiobacterium thermophilum IAM
           14863]
          Length = 659

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 32/54 (59%), Gaps = 5/54 (9%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           LLRPR LEE  GQ  A   L      AK  +    HV+  GPPG+GKTT+A++V
Sbjct: 182 LLRPRALEEVVGQDRAIQAL-----LAKVASPFPQHVILYGPPGVGKTTVARLV 230


>gi|297820436|ref|XP_002878101.1| CIP111 [Arabidopsis lyrata subsp. lyrata]
 gi|297323939|gb|EFH54360.1| CIP111 [Arabidopsis lyrata subsp. lyrata]
          Length = 1025

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 21/34 (61%), Positives = 25/34 (73%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL  GPPG GKT+LA+  AR+ GVNF S +GP I
Sbjct: 424 VLIYGPPGTGKTSLARSFARDSGVNFFSVNGPEI 457



 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 16/111 (14%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDHV--------LFVGPPGLGKTTLAQVVARE 77
             E+  GQ E  + L   +E  +   +A   +        L  GPPG  KT +A+ VA E
Sbjct: 725 NWEDVGGQNEVKNQLMEAVEWPQKHQDAFKRIGTRPPSGILMFGPPGCSKTLMARAVASE 784

Query: 78  LGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DVLFIDEIHRLSII 120
             +NF +  GP +     G+    + +L  +       ++F DEI  L+ I
Sbjct: 785 AKLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDSLASI 835


>gi|118353063|ref|XP_001009802.1| ATPase, AAA family protein [Tetrahymena thermophila]
 gi|89291569|gb|EAR89557.1| ATPase, AAA family protein [Tetrahymena thermophila SB210]
          Length = 1060

 Score = 46.2 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/34 (61%), Positives = 23/34 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL  GPPG GKT LA+  A ELG+NF S  GP I
Sbjct: 811 VLLYGPPGCGKTYLAKATANELGLNFFSVKGPEI 844


>gi|326784524|ref|YP_004324985.1| clamp loader subunit [Prochlorococcus phage P-SSM7]
 gi|310004557|gb|ADO98949.1| clamp loader subunit [Prochlorococcus phage P-SSM7]
          Length = 332

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 15/121 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T+E+     +  S  K F++  +     + ++L  G  G+GKTT+A+ +  ELGV+ 
Sbjct: 30  RPKTIEDCILPTDVKSTFKGFVDQGE-----IPNLLLSGTAGVGKTTIAKALCNELGVDS 84

Query: 83  RSTSGP--------VIAKAGDLAAL--LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
              +G         V  +A   AA   LT+     VL IDE    +  V+ +L  ++E+F
Sbjct: 85  YVINGSDEGRFLDTVRNQAKSFAATVSLTSTSRHKVLIIDEADNTTADVQLLLRASIEEF 144

Query: 133 Q 133
           Q
Sbjct: 145 Q 145


>gi|269836546|ref|YP_003318774.1| ATP-dependent protease La [Sphaerobacter thermophilus DSM 20745]
 gi|269785809|gb|ACZ37952.1| ATP-dependent protease La [Sphaerobacter thermophilus DSM 20745]
          Length = 837

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 96/231 (41%), Gaps = 67/231 (29%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           + FVGPPG+GKT+LAQ +AR LG  F R + G V  +A              G +   + 
Sbjct: 381 LCFVGPPGVGKTSLAQSIARALGRRFTRMSLGGVRDEAEIRGHRRTYIGAMPGRIIQAIR 440

Query: 102 NLEDRDVLFI-DEIHRL--------SIIVEEILYP----AMEDFQLDLMVGEGPSARSVK 148
                D +F+ DEI +L        S  + E+L P    +  D  LD           V 
Sbjct: 441 RAGTNDPVFVLDEIDKLGADWRGDPSSALLEVLDPEQNHSFRDHYLD-----------VP 489

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL-----KTIVQRGAKLTGL-- 201
            +LS+   IA    +  +  PL+DR  I ++L+ Y  E+      K +V +  K   L  
Sbjct: 490 FDLSKVMFIATANMLDTIPAPLRDRMEI-LQLSGYTDEEKLNIARKYLVPKQLKRHALSP 548

Query: 202 ---AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
              +++DEA  EI                 ++ +   A  + + REIA  A
Sbjct: 549 DEVSISDEALLEI-----------------IQHYTREAGVRNLEREIASVA 582


>gi|164659980|ref|XP_001731114.1| hypothetical protein MGL_2113 [Malassezia globosa CBS 7966]
 gi|159105012|gb|EDP43900.1| hypothetical protein MGL_2113 [Malassezia globosa CBS 7966]
          Length = 737

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VLF GPPG GKT +A  +A ELGV F S S P I    +G+    L +  D        +
Sbjct: 131 VLFHGPPGCGKTMMAGALAGELGVPFLSVSAPSIVSGTSGESEKALRDTFDEAKSIAPCI 190

Query: 109 LFIDEI 114
           LF+DEI
Sbjct: 191 LFVDEI 196



 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 478 VLLWGPPGCGKTLLAKAVANESRANFISVKGP 509


>gi|148549484|ref|YP_001269586.1| ATP-dependent protease La [Pseudomonas putida F1]
 gi|148513542|gb|ABQ80402.1| ATP-dependent protease La [Pseudomonas putida F1]
          Length = 805

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 79/189 (41%), Gaps = 50/189 (26%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAKAGDLAALLT 101
           VL VGPPG+GKT++ + +A  LG  F   S                 + A+ G L   L 
Sbjct: 387 VLLVGPPGVGKTSIGKSIAESLGRPFYRFSVGGMRDEAEIKGHRRTYIGAQPGKLVQALK 446

Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAME----DFQLDLMVGEGPSARSVK 148
           ++E  + V+ +DEI ++    +        E L P       D  LDL           +
Sbjct: 447 DVEVMNPVIMLDEIDKMGQSYQGDPASALLETLDPEQNVDFLDHYLDL-----------R 495

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR----------GAKL 198
           ++LS+   +     +  +  PL DR  + IRL+ Y  E+  TI +R          G   
Sbjct: 496 LDLSKVLFVCTANTLDSIPGPLLDRMEV-IRLSGYITEEKMTIAKRHLWPKQLEKAGVSK 554

Query: 199 TGLAVTDEA 207
           T L+++D A
Sbjct: 555 TSLSISDSA 563


>gi|71654128|ref|XP_815689.1| replication factor C, subunit 2 [Trypanosoma cruzi strain CL
          Brener]
 gi|70880763|gb|EAN93838.1| replication factor C, subunit 2, putative [Trypanosoma cruzi]
          Length = 347

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 32/56 (57%), Gaps = 4/56 (7%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP TL E   Q EA   L+  ++++ +    + H LF GPPG GKTT    VAREL
Sbjct: 26 RPMTLSEVKSQEEAVCALRASLQSSAS----MPHFLFHGPPGTGKTTAILAVAREL 77


>gi|312381272|gb|EFR27057.1| hypothetical protein AND_06456 [Anopheles darlingi]
          Length = 848

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E G+NF S  GP
Sbjct: 800 VLLCGPPGCGKTLLAKAVANEAGINFISVKGP 831


>gi|257052996|ref|YP_003130829.1| replication factor C small subunit [Halorhabdus utahensis DSM
          12940]
 gi|256691759|gb|ACV12096.1| Replication factor C [Halorhabdus utahensis DSM 12940]
          Length = 326

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 5/60 (8%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          I   RP+TLE+  G       L  ++         L H+LF GP G+GKTT A  +AREL
Sbjct: 16 IEKYRPQTLEDIAGHEAIVERLGSYVSRND-----LSHMLFAGPAGVGKTTAATAIAREL 70


>gi|224532078|ref|ZP_03672710.1| DNA polymerase III, subunits gamma and tau [Borrelia valaisiana
           VS116]
 gi|224511543|gb|EEF81949.1| DNA polymerase III, subunits gamma and tau [Borrelia valaisiana
           VS116]
          Length = 560

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 94/227 (41%), Gaps = 25/227 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPR      GQ      LK  IE  K  A A    +F GP G+GKT+ A+  AR L    
Sbjct: 12  RPRDFNSLEGQDFVVETLKHSIEKNKI-ANAY---IFSGPRGVGKTSSARAFARCLNC-- 65

Query: 83  RSTSGPVIAKAGDL--AALLTNLEDRDVLFIDEIHRLSI-----IVEEILY-PAMEDF-- 132
              +GP +   G+      + N    DV+ ID     S+     I EEI++ PA+  +  
Sbjct: 66  --KNGPTVMPCGECNNCKSIENDSSLDVVEIDGASNTSVQDIRQIKEEIMFPPAISKYRI 123

Query: 133 ----QLDLMVGEGPSA--RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
               ++ ++     +A  ++++   +    I ATT    L   ++ R           +E
Sbjct: 124 YIIDEVHMLSNSAFNALLKTIEEPPNYIVFIFATTESHKLPETIKSRCQ-HFSFKLLSLE 182

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
            +  ++++      +   DEA   IA +S G+ R A  L  +V  F 
Sbjct: 183 KIYNMLKKVCFEDHIKYEDEALKWIAYKSSGSVRDAYTLFDQVVSFT 229


>gi|156355133|ref|XP_001623528.1| predicted protein [Nematostella vectensis]
 gi|156210238|gb|EDO31428.1| predicted protein [Nematostella vectensis]
          Length = 284

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 35/67 (52%), Gaps = 9/67 (13%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNL-------EDRD 107
           VL  GPPG GKT LAQ VA E+   F S S    + +  G+   L+  L       E R 
Sbjct: 19  VLLYGPPGTGKTRLAQAVASEVNSTFYSVSSADLISSWVGESEKLIRELFHDARKREGRS 78

Query: 108 VLFIDEI 114
           V+FIDEI
Sbjct: 79  VIFIDEI 85


>gi|291333464|gb|ADD93165.1| putative ATPase family associated with various cellular
          activities AAA [uncultured archaeon
          MedDCM-OCT-S05-C724]
          Length = 321

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 5/60 (8%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          I   RP  L E  GQ    + LK ++     +  ++ H+LF GP G+GKTT A  +ARE+
Sbjct: 6  IEKYRPNNLSEVVGQEAVTTRLKNYV-----KESSMPHLLFAGPAGIGKTTSALALAREM 60


>gi|73975780|ref|XP_860512.1| PREDICTED: similar to peroxisome biogenesis factor 1 isoform 2
           [Canis familiaris]
          Length = 1210

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 21/32 (65%), Positives = 23/32 (71%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA V+ARE G+NF S  GP
Sbjct: 804 VLLYGPPGTGKTLLAGVIARESGMNFISVKGP 835


>gi|15920690|ref|NP_376359.1| replication factor C small subunit [Sulfolobus tokodaii str. 7]
 gi|42559516|sp|Q975D3|RFCS_SULTO RecName: Full=Replication factor C small subunit; Short=RFC small
          subunit; AltName: Full=Clamp loader small subunit
 gi|15621473|dbj|BAB65468.1| 327aa long hypothetical replication factor C small subunit
          [Sulfolobus tokodaii str. 7]
          Length = 327

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 6/63 (9%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81
          RPR+L++   Q +    LK F+     + + + H+LF GPPG GKTT A  +  +L G N
Sbjct: 14 RPRSLDDIVNQKDIVERLKRFV-----KDKNMPHLLFSGPPGTGKTTAALALVHDLYGDN 68

Query: 82 FRS 84
          +R 
Sbjct: 69 YRQ 71


>gi|57095978|ref|XP_532459.1| PREDICTED: similar to peroxisome biogenesis factor 1 isoform 1
           [Canis familiaris]
          Length = 1267

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 21/32 (65%), Positives = 23/32 (71%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA V+ARE G+NF S  GP
Sbjct: 861 VLLYGPPGTGKTLLAGVIARESGMNFISVKGP 892


>gi|16081896|ref|NP_394300.1| VAT ATPase (VCP-like ATPase) [Thermoplasma acidophilum DSM 1728]
 gi|11387127|sp|O05209|VAT_THEAC RecName: Full=VCP-like ATPase
 gi|1916752|gb|AAC45089.1| VCP-like ATPase [Thermoplasma acidophilum]
 gi|10640117|emb|CAC11969.1| VAT ATPase (VCP-like ATPase) [Thermoplasma acidophilum]
          Length = 745

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 8/76 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DV 108
           V+  GPPG GKT +A+ VA E G NF S +GP I           L  + +  E+    +
Sbjct: 227 VILYGPPGTGKTLIARAVANESGANFLSINGPEIMSKYYGQSEQKLREIFSKAEETAPSI 286

Query: 109 LFIDEIHRLSIIVEEI 124
           +FIDEI  ++   EE+
Sbjct: 287 IFIDEIDSIAPKREEV 302



 Score = 40.0 bits (92), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 18/33 (54%), Positives = 21/33 (63%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           L  GPPG+GKT LA+ VA E   NF S  GP +
Sbjct: 505 LLYGPPGVGKTLLAKAVATESNANFISIKGPEV 537


>gi|322823330|gb|EFZ29106.1| replication factor C, subunit 2, putative [Trypanosoma cruzi]
          Length = 347

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 32/56 (57%), Gaps = 4/56 (7%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP TL E   Q EA   L+  ++++ +    + H LF GPPG GKTT    VAREL
Sbjct: 26 RPMTLSEVKSQEEAVCALRASLQSSAS----MPHFLFHGPPGTGKTTAILAVAREL 77


>gi|303246049|ref|ZP_07332330.1| Adenosinetriphosphatase [Desulfovibrio fructosovorans JJ]
 gi|302492445|gb|EFL52316.1| Adenosinetriphosphatase [Desulfovibrio fructosovorans JJ]
          Length = 503

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDR------DV 108
           VL  GPPG GKT LA+ VA E G  F S SGP  +    G+    L NL D        V
Sbjct: 258 VLLYGPPGCGKTLLARAVAHESGARFFSVSGPELITKWHGESEENLRNLFDEAQKSQPAV 317

Query: 109 LFIDEI 114
           +F DEI
Sbjct: 318 VFFDEI 323


>gi|296413658|ref|XP_002836526.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295630353|emb|CAZ80717.1| unnamed protein product [Tuber melanosporum]
          Length = 703

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 51/105 (48%), Gaps = 16/105 (15%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
            L+   G+ E  ++L  FI    A  E   H        VL  GPPG GKT LA  +ARE
Sbjct: 156 CLKNIGGREEVINDLLEFIAMPLAHPEVNLHTGVQPPCGVLLHGPPGCGKTMLANAIARE 215

Query: 78  LGVNFRSTSGPVIAK--AGDLAALLTNL--EDRDV----LFIDEI 114
           +G+ F + S P I    +G+   +L  L  E R +    +F+DEI
Sbjct: 216 VGLPFIAISAPSIVSGVSGEPEKMLRELFEEARGIAPCLMFMDEI 260



 Score = 39.7 bits (91), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ +A E G N  S  GP
Sbjct: 473 VLLWGPPGCGKTLLAKAIANESGANLISIRGP 504


>gi|194209614|ref|XP_001493415.2| PREDICTED: peroxisome biogenesis factor 1 [Equus caballus]
          Length = 1283

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 21/32 (65%), Positives = 23/32 (71%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA V+ARE G+NF S  GP
Sbjct: 877 VLLYGPPGTGKTLLAGVIARESGMNFISVKGP 908


>gi|322497912|emb|CBZ32987.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 877

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 23/32 (71%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ VA E+ +NF S  GP
Sbjct: 602 VLFYGPPGCGKTLLAKAVATEMSMNFISVKGP 633


>gi|322489921|emb|CBZ25181.1| putative peroxisome assembly protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 959

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 23/32 (71%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ VA E+ +NF S  GP
Sbjct: 684 VLFYGPPGCGKTLLAKAVATEMSMNFISVKGP 715


>gi|302343350|ref|YP_003807879.1| ATPase AAA [Desulfarculus baarsii DSM 2075]
 gi|301639963|gb|ADK85285.1| AAA ATPase central domain protein [Desulfarculus baarsii DSM 2075]
          Length = 452

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 70/147 (47%), Gaps = 18/147 (12%)

Query: 9   SRNVSQEDADIS-LLRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           S NVS   A ++  +RPR ++E  GQ   +     L+  +E  +  +     ++  GPPG
Sbjct: 8   SGNVSSGVAPLAERMRPRAIDEIVGQNHLLGPGKALRRLLEEGRPIS-----LILWGPPG 62

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLS 118
            GKTTLA+++A+    +F   S  V++   D+   +           R  LF+DEIHR +
Sbjct: 63  TGKTTLARLLAQLWDTDFTEFSA-VLSGVADVRRAVEEARAKLKGGRRTTLFVDEIHRFN 121

Query: 119 IIVEEILYPAMEDFQLDLM--VGEGPS 143
              ++   P +E   + L+    E PS
Sbjct: 122 KSQQDAFLPHVESGVITLVGATTENPS 148


>gi|253744345|gb|EET00566.1| ATPase, AAA family [Giardia intestinalis ATCC 50581]
          Length = 415

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 64/144 (44%), Gaps = 17/144 (11%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEA---LDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP T++E  G     S     +     +++A   L  ++  GPPG GKT+LA++ A+  
Sbjct: 7   LRPNTIDEIVGNRHILSLTDGIVGRIYEQSQASHILQSIIITGPPGTGKTSLARLYAKSF 66

Query: 79  G-----VNFRSTSGPVIA-------KAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
                 + F+S    V          A D A  L N      LF+DE HR +   ++ L 
Sbjct: 67  DPSYKLIEFKSGQATVAELNKVIERVAADRAGGLINA--HVCLFVDEAHRCTKTQQDRLL 124

Query: 127 PAMEDFQLDLMVGEGPSARSVKIN 150
            A+ED  + L++    S  +  I+
Sbjct: 125 SAVEDGTVTLILATTASPYTAIID 148


>gi|301791878|ref|XP_002930906.1| PREDICTED: peroxisome biogenesis factor 1-like [Ailuropoda
           melanoleuca]
          Length = 1269

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 21/32 (65%), Positives = 23/32 (71%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA V+ARE G+NF S  GP
Sbjct: 863 VLLYGPPGTGKTLLAGVIARESGMNFISVKGP 894


>gi|218133241|ref|ZP_03462045.1| hypothetical protein BACPEC_01106 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992114|gb|EEC58118.1| hypothetical protein BACPEC_01106 [Bacteroides pectinophilus ATCC
           43243]
          Length = 422

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 65/138 (47%), Gaps = 29/138 (21%)

Query: 16  DADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKAR----AEALD------HVLFV 60
           D +I+LL+P  ++EF      GQ EA   L V +     R    AE  D      ++L +
Sbjct: 61  DMEINLLKPMEIKEFLDEYVIGQEEAKKVLSVAVYNHYKRIMRKAEDDDVELQKSNILVI 120

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---EDRDV----- 108
           GP G GKT LAQ +A+ L V F       + +AG    D+  +L  L    D DV     
Sbjct: 121 GPTGCGKTYLAQTLAKLLNVPFAIADATTLTEAGYVGEDVENILLKLIQAADGDVERAQY 180

Query: 109 --LFIDEIHRLSIIVEEI 124
             ++IDEI +++   E +
Sbjct: 181 GIIYIDEIDKITKKSENV 198


>gi|89901777|ref|YP_524248.1| ATP-dependent protease La [Rhodoferax ferrireducens T118]
 gi|89346514|gb|ABD70717.1| ATP-dependent protease La [Rhodoferax ferrireducens T118]
          Length = 797

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 91/223 (40%), Gaps = 59/223 (26%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           +  VGPPG+GKT+L Q +AR LG  F R + G V  +A              G++   L 
Sbjct: 371 LCLVGPPGVGKTSLGQSIARALGRKFVRVSLGGVHDEAEIRGHRRTYVGALPGNIIQALK 430

Query: 102 NLEDRD-VLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152
               R  V+ +DEI +L        S  + E+L P   +   D  +       +V  +LS
Sbjct: 431 KAGTRGCVMMLDEIDKLGSGIQGDPSAALLEVLDPEQNNSFRDNYL-------AVPYDLS 483

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR----------GAKLTGLA 202
           +   I     +  +  PL+DR  + + L  Y  E+ + I +R          G K   LA
Sbjct: 484 QVLFITTANVLDPVPGPLRDRMEV-LHLAGYTQEEKREIARRYLVTRQLEDSGLKPEQLA 542

Query: 203 VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           +TD+A   I                 +RD+   A  + + R+I
Sbjct: 543 ITDDALAAI-----------------IRDYTREAGVRNLERQI 568


>gi|325836748|ref|ZP_08166215.1| ATPase, AAA family [Turicibacter sp. HGF1]
 gi|325491126|gb|EGC93415.1| ATPase, AAA family [Turicibacter sp. HGF1]
          Length = 421

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 68/147 (46%), Gaps = 16/147 (10%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV---LFVGPPGLGKTTLAQVVARE 77
           L+RPRTL+E  GQ       ++       +  A++H+   +F GP G GKTT+A ++A  
Sbjct: 8   LIRPRTLDEVVGQQHLIGEGQIL-----RKLIAVNHIPNLIFYGPSGTGKTTIANIIASL 62

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDRD-----VLFIDEIHRLSIIVEEILYPAMEDF 132
                   +    AK  D+  ++++L   +      L++DEI   +   ++ L   +E  
Sbjct: 63  SNKKIYKLNA-TDAKTEDIKQIISSLNTLEGMNGIFLYLDEIQNFNKKQQQTLLKYIETG 121

Query: 133 QLDLMVG--EGPSARSVKINLSRFTLI 157
           Q+ L+    E P        LSR T++
Sbjct: 122 QITLITSTTENPYFTIFSAILSRSTIL 148


>gi|291520782|emb|CBK79075.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Coprococcus
           catus GD/7]
          Length = 432

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 63/139 (45%), Gaps = 28/139 (20%)

Query: 14  QEDADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEA---------LDHVLF 59
           Q DAD +LL+P  ++ F      GQ +A   L V +     R  +           +++ 
Sbjct: 54  QNDADFNLLKPVEIKNFLDQYVIGQEQAKKVLSVAVYNHYKRIASNAGNDVELQKSNIIM 113

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL----------ED 105
           VGP G GKT LAQ +A+ L V F       + +AG    D+  +L  L           +
Sbjct: 114 VGPTGSGKTLLAQTLAKILNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDIEKAE 173

Query: 106 RDVLFIDEIHRLSIIVEEI 124
           R +++IDEI +++   E +
Sbjct: 174 RGIIYIDEIDKITKKSENV 192


>gi|281353480|gb|EFB29064.1| hypothetical protein PANDA_021538 [Ailuropoda melanoleuca]
          Length = 1268

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 21/32 (65%), Positives = 23/32 (71%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA V+ARE G+NF S  GP
Sbjct: 862 VLLYGPPGTGKTLLAGVIARESGMNFISVKGP 893


>gi|317495276|ref|ZP_07953646.1| ATP-dependent protease [Gemella moribillum M424]
 gi|316914698|gb|EFV36174.1| ATP-dependent protease [Gemella moribillum M424]
          Length = 766

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 102/228 (44%), Gaps = 49/228 (21%)

Query: 43  FIEAAKARAEALDHVLFV-GPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA------- 93
           F+   K R +    +L + GPPG+GK++LA+ +AR +G +F R + G V  +A       
Sbjct: 330 FLAVKKLRDDMKSPILCLSGPPGVGKSSLAKSIARSMGRSFVRISLGGVRDEAEIRGHRR 389

Query: 94  -------GDLAALLTNLEDRD-VLFIDEIHRLSIIVE--------EILYPAMEDFQLDLM 137
                  G +   L  ++ ++ V+ +DEI +++  ++        E++ PA  +  +D  
Sbjct: 390 TYLGALPGKIIQSLKKIKTKNPVILLDEIDKMASDIKGDPASAMLEVIDPAQNNEFVDHY 449

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED-----LKTIV 192
           +        +  +LS+   IA    + L+  PL+DR  + I L  Y +++     +K ++
Sbjct: 450 L-------DIPFDLSKVLFIATANNLSLIPAPLRDRMEV-IELESYTVKEKENIAIKYLI 501

Query: 193 QRGAKLTGLAVTDEAACEIAMRS-----------RGTPRIAGRLLRRV 229
            R  K  GL     +  + A+             R   R+ G + R+V
Sbjct: 502 PRQIKENGLKKEQISFTKQAINKVINGYTYEAGVRNLERVLGSICRKV 549


>gi|229496591|ref|ZP_04390305.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Porphyromonas
           endodontalis ATCC 35406]
 gi|229316488|gb|EEN82407.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Porphyromonas
           endodontalis ATCC 35406]
          Length = 420

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           +++ VGP G GKT LAQ +AR L V F      V+ +AG    D+ ++LT L        
Sbjct: 123 NIIMVGPTGTGKTLLAQTIARMLDVPFAIADATVLTEAGYVGEDIESILTRLLQSCNYDE 182

Query: 104 --EDRDVLFIDEIHRLS 118
              +R ++FIDEI +++
Sbjct: 183 RAAERGIVFIDEIDKIA 199


>gi|149204649|ref|ZP_01881614.1| ATP-dependent Zn protease [Roseovarius sp. TM1035]
 gi|149141908|gb|EDM29958.1| ATP-dependent Zn protease [Roseovarius sp. TM1035]
          Length = 742

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 54/122 (44%), Gaps = 10/122 (8%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEF-TGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           DR   +++ ++Q   D++L     L E  T      ++L  +   A A AE     +  G
Sbjct: 297 DRLAEIAQKMTQGQPDLTLDAVHGLGEVRTYLSRMLNDLNAWRTGALAWAEVTSSAVLYG 356

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR---------DVLFID 112
           PPG GKTTLA   A   G+   STS     K G    +L  L+D           VLFID
Sbjct: 357 PPGTGKTTLANAFAGSAGIPIISTSYADCQKHGHQGDMLRALDDAFATAKEAAPAVLFID 416

Query: 113 EI 114
           E+
Sbjct: 417 EL 418


>gi|218884001|ref|YP_002428383.1| replication factor C large subunit [Desulfurococcus kamchatkensis
           1221n]
 gi|218765617|gb|ACL11016.1| replication factor C large subunit [Desulfurococcus kamchatkensis
           1221n]
          Length = 426

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 82/209 (39%), Gaps = 27/209 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+TL+E   Q EA S L  ++ + +    +    L  GPPG GKT+L + +AR  G   
Sbjct: 13  RPKTLDEVVNQDEAKSKLLEWLSSWEKGKPSKKAALLHGPPGCGKTSLVEALARSKGYQL 72

Query: 83  ---------RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
                    R      I K    +  LT    R ++ +DE+  + +  +     A+ +  
Sbjct: 73  LEMNASDARRKEDIERIVKLASRSGALTG--SRKIILLDEVDGMDVRADAGGVEALVEV- 129

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
             + V   P             ++ A      +  PL++     I        D+ T+++
Sbjct: 130 --IKVSANP------------IIMTANNPYSQMLRPLRE-LSEMIAFKRLTPRDVVTVLK 174

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
           R      L   D+A  EIA RS G  R A
Sbjct: 175 RICSAEKLVCEDQALDEIAKRSEGDLRSA 203


>gi|297619992|ref|YP_003708097.1| AAA family ATPase [Methanococcus voltae A3]
 gi|297378969|gb|ADI37124.1| AAA family ATPase, CDC48 subfamily [Methanococcus voltae A3]
          Length = 781

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 46/105 (43%), Gaps = 16/105 (15%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
           + E+  G  E    ++  +E      E  D         VL  GPPG GKT LA+ VA E
Sbjct: 175 SYEDIGGLREEVKKIREMVELPMRHPELFDRLGIEPPKGVLLAGPPGTGKTLLAKAVANE 234

Query: 78  LGVNFRSTSGPVIAKA------GDLAALLTNLEDR--DVLFIDEI 114
            G N+ + +GP I          +L  +    E+    V+FIDEI
Sbjct: 235 SGANYYTINGPEIMSKYVGETEENLRKIFEEAEENAPSVIFIDEI 279



 Score = 37.4 bits (85), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 20/34 (58%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  G PG GKT LA+ VA E   NF S  GP I
Sbjct: 550 ILLYGAPGTGKTLLAKAVANESEANFISVKGPEI 583


>gi|146082384|ref|XP_001464496.1| peroxisome assembly protein [Leishmania infantum JPCM5]
          Length = 507

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 23/32 (71%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ VA E+ +NF S  GP
Sbjct: 232 VLFYGPPGCGKTLLAKAVATEMSMNFISVKGP 263


>gi|332795777|ref|YP_004457277.1| AAA ATPase central domain-containing protein [Acidianus hospitalis
           W1]
 gi|332693512|gb|AEE92979.1| AAA ATPase central domain protein [Acidianus hospitalis W1]
          Length = 540

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 8/82 (9%)

Query: 46  AAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN-FRSTSGPVIAKA-GDLAALLTNL 103
           A +A+      V+  GPPG GKT+L++ +A +LG N F+  +  +++K  G+   LLT+ 
Sbjct: 41  AEEAKKGKTYGVILFGPPGTGKTSLSKAIANKLGWNFFQLNASDILSKWYGESEILLTSF 100

Query: 104 EDR------DVLFIDEIHRLSI 119
            D+       VLFIDEI   ++
Sbjct: 101 LDKVESNQPAVLFIDEIDSFTM 122



 Score = 40.4 bits (93), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 9/70 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA----KAGDLAALLTNLEDRD----V 108
           +L  GPPG GKT++A+ +A EL  +F   SG  IA    +A ++ A   N+  RD    V
Sbjct: 319 ILLYGPPGTGKTSIAKAMANELKASFIILSGEEIASAQIRAPEVIAEKFNIA-RDNSPAV 377

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 378 IFIDEIDMIA 387


>gi|20089555|ref|NP_615630.1| replication factor C small subunit [Methanosarcina acetivorans
          C2A]
 gi|42559497|sp|Q8TSX5|RFCS_METAC RecName: Full=Replication factor C small subunit; Short=RFC small
          subunit; AltName: Full=Clamp loader small subunit
 gi|19914469|gb|AAM04110.1| replication factor C, small subunit [Methanosarcina acetivorans
          C2A]
          Length = 338

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 5/74 (6%)

Query: 5  EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
          + L+  +  +E+  I   RP  L +  GQ E    LK ++         L H+LF GPPG
Sbjct: 2  QALMEDSKIKEEIWIEKYRPVRLNQVAGQDETIERLKSYVATKN-----LPHLLFSGPPG 56

Query: 65 LGKTTLAQVVAREL 78
          +GKT  A  +ARE+
Sbjct: 57 VGKTASAVSIAREI 70


>gi|321399234|emb|CAM66885.2| putative peroxisome assembly protein [Leishmania infantum JPCM5]
          Length = 877

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 23/32 (71%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ VA E+ +NF S  GP
Sbjct: 602 VLFYGPPGCGKTLLAKAVATEMSMNFISVKGP 633


>gi|221218167|ref|ZP_03589633.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi
           72a]
 gi|225549648|ref|ZP_03770614.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi
           118a]
 gi|221192115|gb|EEE18336.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi
           72a]
 gi|225369925|gb|EEG99372.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi
           118a]
          Length = 560

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 97/228 (42%), Gaps = 25/228 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPR      GQ      LK  IE  K  A A    +F GP G+GKT+ A+  AR L    
Sbjct: 12  RPRDFNSLEGQDFVVETLKHSIEKNKI-ANAY---IFSGPRGVGKTSSARAFARCLNC-- 65

Query: 83  RSTSGPVIAKAGDLAAL--LTNLEDRDVLFIDEIHRLSI-----IVEEILY-PAMEDF-- 132
              +GP +   G+ +    + N    DV+ ID     S+     I EEI++ PA+  +  
Sbjct: 66  --RNGPTVMPCGECSNCKSIENDSSLDVVEIDGASNTSVQDIRQIKEEIMFPPAISKYRI 123

Query: 133 ----QLDLMVGEGPSA--RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
               ++ ++     +A  ++++   +    I ATT    L   ++ R           ++
Sbjct: 124 YIIDEVHMLSNSAFNALLKTIEEPPNYIVFIFATTESHKLPETIKSRCQ-HFSFKLLSLD 182

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
            +  ++++      +   DEA   IA +S G+ R A  L  ++  F++
Sbjct: 183 KIYNMLKKVCLEDDIKYEDEALKWIAYKSSGSVRDAYTLFDQIVSFSD 230


>gi|89891553|ref|ZP_01203058.1| DNA polymerase III gamma/tau subunit [Flavobacteria bacterium
           BBFL7]
 gi|89516327|gb|EAS18989.1| DNA  polymerase III  gamma/tau subunit [Flavobacteria bacterium
           BBFL7]
          Length = 624

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 92/232 (39%), Gaps = 46/232 (19%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG--- 79
           RP T E+  GQ      L+  I A+   A+AL   LF GP G+GKTT A+++A+++    
Sbjct: 12  RPETFEDVVGQSAITKTLENAI-ASNHLAQAL---LFTGPRGVGKTTCARILAKKINQQN 67

Query: 80  ----------VNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEE 123
                      N             D+ +L   +       +  V  IDE+H LS     
Sbjct: 68  AEVDPDEDFAFNIFELDAASNNSVDDIRSLTEQVRIPPQVGNFKVYIIDEVHMLSTAA-- 125

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
                   F   L   E P A ++         I ATT    +   +  R  I    +F 
Sbjct: 126 --------FNAFLKTLEEPPAHAI--------FILATTEKHKIIPTILSRCQI---FDFK 166

Query: 184 EIE--DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
            I   D++  ++R A + G+   DEA   IA ++ G  R +  +  RV  F+
Sbjct: 167 RITVADMRGHLKRIAGIEGITADDEALHIIAQKADGALRDSLSIFDRVVSFS 218


>gi|325968175|ref|YP_004244367.1| replication factor C small subunit [Vulcanisaeta moutnovskia
           768-28]
 gi|323707378|gb|ADY00865.1| replication factor C small subunit [Vulcanisaeta moutnovskia
           768-28]
          Length = 338

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 101/243 (41%), Gaps = 48/243 (19%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +   RP  +++   Q E    +K  ++        + H+LF GPPG GKTT+A  +AREL
Sbjct: 9   VEKYRPSRIDDIIDQEEVKERVKQLLKTGN-----MPHMLFYGPPGTGKTTMALAIAREL 63

Query: 79  -GVNFRSTSGPVIAKAGDLAALLTNLEDR---------------DVLFIDEIHRLSIIVE 122
            G  +R     V+         +T + +R                ++ +DE   ++   +
Sbjct: 64  YGDAWREN---VLELNASDERGITTIRERVKEFARTAPMGKAPYKLIILDEADNMTSDAQ 120

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           + L   ME +                 N++RF LIA    V  + +P+Q R  +  R + 
Sbjct: 121 QALRRMMEMYA----------------NVTRFILIA--NYVSRIIDPIQSRCAM-FRFSP 161

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
              + +   ++  A   G+ VTDEA   I   S+G  R A   L+     A  A A+ IT
Sbjct: 162 LPKDAVLGRLRDIASREGVKVTDEALEAIWDISQGDMRKAINTLQ-----AATATAREIT 216

Query: 243 REI 245
            E+
Sbjct: 217 PEV 219


>gi|312148351|gb|ADQ31010.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi
           JD1]
          Length = 560

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 97/228 (42%), Gaps = 25/228 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPR      GQ      LK  IE  K  A A    +F GP G+GKT+ A+  AR L    
Sbjct: 12  RPRDFNSLEGQDFVVETLKHSIEKNKI-ANAY---IFSGPRGVGKTSSARAFARCLNC-- 65

Query: 83  RSTSGPVIAKAGDLAAL--LTNLEDRDVLFIDEIHRLSI-----IVEEILY-PAMEDF-- 132
              +GP +   G+ +    + N    DV+ ID     S+     I EEI++ PA+  +  
Sbjct: 66  --RNGPTVMPCGECSNCKSIENDSSLDVVEIDGASNTSVQDIRQIKEEIMFPPAISKYRI 123

Query: 133 ----QLDLMVGEGPSA--RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
               ++ ++     +A  ++++   +    I ATT    L   ++ R           ++
Sbjct: 124 YIIDEVHMLSNSAFNALLKTIEEPPNYIVFIFATTESHKLPETIKSRCQ-HFSFKLLSLD 182

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
            +  ++++      +   DEA   IA +S G+ R A  L  ++  F++
Sbjct: 183 KIYNMLKKVCLEDDIKYEDEALKWIAYKSSGSVRDAYTLFDQIVSFSD 230


>gi|196012674|ref|XP_002116199.1| hypothetical protein TRIADDRAFT_30509 [Trichoplax adhaerens]
 gi|190581154|gb|EDV21232.1| hypothetical protein TRIADDRAFT_30509 [Trichoplax adhaerens]
          Length = 299

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 20/34 (58%), Positives = 24/34 (70%)

Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
          +L  GPPG GKT LA +VA+E G+NF S  GP I
Sbjct: 65 ILLYGPPGCGKTLLAGIVAKECGLNFISIKGPEI 98


>gi|317503214|ref|ZP_07961273.1| replication-associated recombination protein A [Prevotella
          salivae DSM 15606]
 gi|315665658|gb|EFV05266.1| replication-associated recombination protein A [Prevotella
          salivae DSM 15606]
          Length = 73

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 8/68 (11%)

Query: 22 LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          +RP +L+E+ GQ   V   + L+  I+A +     +   +  GPPG+GKTTLAQ++A +L
Sbjct: 9  MRPHSLDEYVGQQHLVGRGAVLRQMIDAGR-----ISSFILWGPPGVGKTTLAQIIAHKL 63

Query: 79 GVNFRSTS 86
             F + S
Sbjct: 64 ETPFYTLS 71


>gi|326382066|ref|ZP_08203759.1| recombination factor protein RarA [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326199492|gb|EGD56673.1| recombination factor protein RarA [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 435

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 70/162 (43%), Gaps = 25/162 (15%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKAR---AEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP++L    GQ           + A  R      L  ++  GPPG GKTT+A+++A + 
Sbjct: 20  LRPQSLAAVVGQEHVLGP-----DGAIGRMVTEHRLASMILWGPPGCGKTTIARLLAEQT 74

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDV-----LFIDEIHRLSIIVEEILYPAMEDFQ 133
            + F   S      A      L   + R+V     LF+DE+HR +   ++   P +ED  
Sbjct: 75  DLAFEPLSATFSGVADLRKVFLAAQKRREVGQGTLLFVDEVHRFNRAQQDSFLPYVEDGT 134

Query: 134 LDLMVG---EGPS--------ARSVKINLSRFTLIAATTRVG 164
           + ++VG   E PS        +R     L R    A TT +G
Sbjct: 135 I-VLVGATTENPSFELNAALLSRCQVFVLKRLDEAALTTLIG 175


>gi|215500541|gb|EEC10035.1| werner helicase interacting protein, putative [Ixodes scapularis]
          Length = 400

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 75/163 (46%), Gaps = 19/163 (11%)

Query: 21  LLRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           L+RP  LE F GQ   +   S L+  I +      ++  ++  GPPG GKTTLA +++++
Sbjct: 5   LMRPSQLEAFVGQDGTLGEKSMLRKLIAS-----NSVPSMILWGPPGCGKTTLAHIISQK 59

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLE----------DRDVLFIDEIHRLSIIVEEILYP 127
              +  +    + A +  +  +   LE           + VLFIDEIHR + + + +   
Sbjct: 60  CKESSEAHFVTLSATSSGVKDVKDTLERARNDQRMFKRKTVLFIDEIHRFNKLQQLVGLC 119

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
                 + L+  + P   ++K  + R + + A    G +TN L
Sbjct: 120 NRASPIVSLLTNDRPGVLTLKQAMRRKSGL-AQAHAGSVTNQL 161


>gi|219685248|ref|ZP_03540068.1| DNA polymerase III, subunits gamma and tau [Borrelia garinii Far04]
 gi|219673344|gb|EED30363.1| DNA polymerase III, subunits gamma and tau [Borrelia garinii Far04]
          Length = 560

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 93/227 (40%), Gaps = 25/227 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPR      GQ      LK  IE  K  A A    +F GP G+GKT+ A+  AR L    
Sbjct: 12  RPRDFNSLEGQDFVVETLKHSIEKNKI-ANAY---IFSGPRGVGKTSSARAFARCLNC-- 65

Query: 83  RSTSGPVIAKAGDLAAL--LTNLEDRDVLFIDEIHRLSI-----IVEEILY-PAMEDF-- 132
              +GP +   G+      + N    DV+ ID     S+     I EEI++ PA+  +  
Sbjct: 66  --KNGPTVMPCGECNNCKSIDNDSSLDVIEIDGASNTSVQDIRQIKEEIMFPPAVSKYRI 123

Query: 133 ----QLDLMVGEGPSA--RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
               ++ ++     +A  ++++        I ATT    L   ++ R           +E
Sbjct: 124 YIIDEVHMLSNSAFNALLKTIEEPPHYIVFIFATTESHKLPETIKSRCQ-HFSFKLLSLE 182

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
            +  ++++      +   DEA   IA +S G+ R A  L  +V  F 
Sbjct: 183 KIYNMLKKVCFEDHIKYEDEALKWIAYKSSGSVRDAYTLFDQVVSFT 229


>gi|307266278|ref|ZP_07547819.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|326391162|ref|ZP_08212707.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter ethanolicus
           JW 200]
 gi|306918728|gb|EFN48961.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|325992795|gb|EGD51242.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 611

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 40/95 (42%), Positives = 47/95 (49%), Gaps = 11/95 (11%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           EE    VE     K FIE     A     VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 171 EELQEIVEFLKYPKKFIELG---ARIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 227

Query: 88  PVIAK--AGDLAALLTNLEDRD------VLFIDEI 114
               +   G  AA + +L D+       ++FIDEI
Sbjct: 228 SDFVEMFVGVGAARVRDLFDQAKKNAPCIVFIDEI 262


>gi|290981375|ref|XP_002673406.1| predicted protein [Naegleria gruberi]
 gi|284086989|gb|EFC40662.1| predicted protein [Naegleria gruberi]
          Length = 345

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 81/211 (38%), Gaps = 55/211 (26%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL---- 78
           RP+T+++   Q E  S LK  +E        L H+LF GPPG GKT+ A  +A++L    
Sbjct: 14  RPKTVDDVVHQEEVVSALKKSLEVGN-----LPHLLFYGPPGNGKTSTATAIAKQLFGPE 68

Query: 79  ---------------GVNFRSTSGPVIAKAGDLAALLTNLEDR--------DVLFIDEIH 115
                          G+N   T     A+     A+  N   +         ++ +DE  
Sbjct: 69  LYKTRVLELNASDERGINVIRTKVKTFAQ----TAVSENPTGKGKYPCPPFKIIILDEAD 124

Query: 116 RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
            +++  +  L   ME +                 N++RF LI     V  + +P+  R  
Sbjct: 125 SMTVDAQSALRRTMETYS----------------NVTRFCLIC--NYVSRIIDPITSRCA 166

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDE 206
              R    E   LK  +Q  A   G+ + DE
Sbjct: 167 -KFRFKPLEYSLLKERLQYIANQEGITLKDE 196


>gi|228473203|ref|ZP_04057958.1| DNA polymerase III, subunits gamma and tau [Capnocytophaga
           gingivalis ATCC 33624]
 gi|228275353|gb|EEK14145.1| DNA polymerase III, subunits gamma and tau [Capnocytophaga
           gingivalis ATCC 33624]
          Length = 362

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 76/303 (25%), Positives = 108/303 (35%), Gaps = 71/303 (23%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP++  +  GQ      L    E A A       +LF GP G+GKTT A+++A+++    
Sbjct: 12  RPQSFVDVVGQKAITDTL----ENAIANDHLAQALLFTGPRGVGKTTCARILAKKINEKT 67

Query: 83  RSTSGPVIAKAGDLAALLTNLE------------------------DRDVLFIDEIHRLS 118
             T G       D A  +  L+                           V  IDE+H LS
Sbjct: 68  TPTDGD-----NDFAFNIFELDAASNNSVEGIRSLIEQVRIPPQVGKYKVYIIDEVHMLS 122

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
                        F   L   E P A ++         I ATT    +   +  R  I  
Sbjct: 123 NAA----------FNAFLKTLEEPPAHAI--------FILATTEKHKVIPTILSRCQI-F 163

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
                 I D +  ++  AK  GL   DEA   IA ++ G  R A  +  RV  F      
Sbjct: 164 DFKRITINDAREYLKYIAKEQGLEAEDEALQIIAQKADGAMRDALSIFDRVVSFC----G 219

Query: 239 KTITREIADAALLRLAIDKM----------GFDQLDLRYLTMIARNFGGGPVGIETISAG 288
           KTITR+     L  L  D               QL + + +++A  F G     +   AG
Sbjct: 220 KTITRQAVSEILNVLDYDTYFKVTDLIVSNNIPQLLIEFNSILAHGFDG-----QHFIAG 274

Query: 289 LSE 291
           L+E
Sbjct: 275 LAE 277


>gi|227830675|ref|YP_002832455.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus L.S.2.15]
 gi|229579582|ref|YP_002837981.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus
           Y.G.57.14]
 gi|284998202|ref|YP_003419969.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus L.D.8.5]
 gi|227457123|gb|ACP35810.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus L.S.2.15]
 gi|228010297|gb|ACP46059.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus
           Y.G.57.14]
 gi|284446097|gb|ADB87599.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus L.D.8.5]
          Length = 759

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 59/136 (43%), Gaps = 17/136 (12%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACS-NLKVFIEAAKARAEALDH-------- 56
           G  S  + QE    +   P+   E  G +E     ++  +E      E   H        
Sbjct: 168 GRTSLEIRQEPVKETAAVPKVTWEDIGDLEDVKEKIREIVELPMRHPEVFQHLGIEPPKG 227

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DV 108
           VL  GPPG+GKT LA+ +A E+G  F S +GP I     G+    L  + +        +
Sbjct: 228 VLLYGPPGVGKTLLARALANEIGAYFTSINGPEIMSKFYGESEQRLREIFEEAEKNAPAI 287

Query: 109 LFIDEIHRLSIIVEEI 124
           +FIDEI  ++   EE+
Sbjct: 288 IFIDEIDAIAPKREEV 303



 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT LA+ VA E G NF +  GP I
Sbjct: 503 ILLFGPPGTGKTMLAKAVATESGANFIAVRGPEI 536


>gi|224533668|ref|ZP_03674257.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi
           CA-11.2a]
 gi|224513341|gb|EEF83703.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi
           CA-11.2a]
          Length = 560

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 97/228 (42%), Gaps = 25/228 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPR      GQ      LK  IE  K  A A    +F GP G+GKT+ A+  AR L    
Sbjct: 12  RPRDFNSLEGQDFVVETLKHSIEKNKI-ANAY---IFSGPRGVGKTSSARAFARCLNC-- 65

Query: 83  RSTSGPVIAKAGDLAAL--LTNLEDRDVLFIDEIHRLSI-----IVEEILY-PAMEDF-- 132
              +GP +   G+ +    + N    DV+ ID     S+     I EEI++ PA+  +  
Sbjct: 66  --RNGPTVMPCGECSNCKSIENDSSLDVVEIDGASNTSVQDIRQIKEEIMFPPAISKYRI 123

Query: 133 ----QLDLMVGEGPSA--RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
               ++ ++     +A  ++++   +    I ATT    L   ++ R           ++
Sbjct: 124 YIIDEVHMLSNSAFNALLKTIEEPPNYIVFIFATTESHKLPETIKSRCQ-HFSFKLLSLD 182

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
            +  ++++      +   DEA   IA +S G+ R A  L  ++  F++
Sbjct: 183 KIYNMLKKVCLEDDIKYEDEALKWIAYKSSGSVRDAYTLFDQIVSFSD 230


>gi|224001990|ref|XP_002290667.1| cell division cycle protein 48 [Thalassiosira pseudonana CCMP1335]
 gi|220974089|gb|EED92419.1| cell division cycle protein 48 [Thalassiosira pseudonana CCMP1335]
          Length = 904

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT +A+ +A E G NF S  GP
Sbjct: 619 VLFYGPPGCGKTLMAKAIANECGANFISIKGP 650



 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 73/161 (45%), Gaps = 39/161 (24%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALL--------TNLEDR 106
           VL  GP G GKT +A+ VA E G  F   +GP VI+K AG+    L         N  D 
Sbjct: 342 VLLTGPSGCGKTAMARAVAAETGAYFFVINGPEVISKRAGESETNLRRAFEDAEANAPDY 401

Query: 107 D--VLFIDEIHRLSI-------IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLI 157
           +  ++FIDEI  ++         VE+ +   +    L LM G  P+        S+  +I
Sbjct: 402 NGAIIFIDEIDSIAPRRDKAGGEVEKRIVSQL----LTLMDGLKPT--------SKVIVI 449

Query: 158 AATTRVGLLTNPLQ-----DR---FGIPIRLNFYEIEDLKT 190
           AAT R G++   L+     DR    GIP      EI  +KT
Sbjct: 450 AATNRPGVVEPALRRPGRFDRELDMGIPDEKGRLEILQIKT 490


>gi|242023130|ref|XP_002431989.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212517340|gb|EEB19251.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 942

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT LA+ VA E G+NF S  GP
Sbjct: 701 ILICGPPGCGKTLLAKAVANEAGINFISVKGP 732



 Score = 36.6 bits (83), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 32/65 (49%), Gaps = 8/65 (12%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLAALLTNLEDRD------VL 109
           L  GPPG GKT LA  +A EL V     S P +    +G+    +  L DR       VL
Sbjct: 261 LLHGPPGCGKTLLATAIAGELDVELIQISAPELIGGVSGESEERIRELFDRAVESAPCVL 320

Query: 110 FIDEI 114
           FIDE+
Sbjct: 321 FIDEV 325


>gi|168039290|ref|XP_001772131.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162676594|gb|EDQ63075.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 769

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 49/104 (47%), Gaps = 15/104 (14%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78
           T ++F GQ      L+  ++  K   E  D        VL  GPPG GKT LA+ +A E 
Sbjct: 230 TFDDFAGQEYVKRELQEVVKILKDSKEFEDLGIYCPKGVLLYGPPGTGKTLLAKAIAGEA 289

Query: 79  GVNFRSTSGPVIAK--AGDLAALLTNLEDR------DVLFIDEI 114
           GV F S SG    +   G  AA + +L  R       ++FIDEI
Sbjct: 290 GVPFFSASGAEFVEMFVGVAAARVRDLFTRARQFAPSIVFIDEI 333


>gi|159476808|ref|XP_001696503.1| flagellar associated protein [Chlamydomonas reinhardtii]
 gi|158282728|gb|EDP08480.1| flagellar associated protein [Chlamydomonas reinhardtii]
          Length = 817

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 8/71 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 521 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARGSAPCV 580

Query: 109 LFIDEIHRLSI 119
           LF DE+  +++
Sbjct: 581 LFFDELDSIAV 591



 Score = 38.5 bits (88), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLEDR--DV 108
           +L  GPPG GKT +A+ VA E G  F   +GP I          +L  +    E     +
Sbjct: 248 ILLYGPPGSGKTLIARAVANETGAFFVVVNGPEIMSKLAGESESNLRKVFQEAEKNAPSI 307

Query: 109 LFIDEIHRLS 118
           +FIDE+  ++
Sbjct: 308 IFIDEVDSIA 317


>gi|148259183|ref|YP_001233310.1| recombination factor protein RarA [Acidiphilium cryptum JF-5]
 gi|326402336|ref|YP_004282417.1| replication-associated recombination protein A [Acidiphilium
           multivorum AIU301]
 gi|146400864|gb|ABQ29391.1| Recombination protein MgsA [Acidiphilium cryptum JF-5]
 gi|325049197|dbj|BAJ79535.1| replication-associated recombination protein A [Acidiphilium
           multivorum AIU301]
          Length = 444

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 62/133 (46%), Gaps = 17/133 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP  L E  GQ   V     L   +E       +L  ++  GPPG+GKTT+A+++A   
Sbjct: 33  LRPHELAEVIGQPHLVGPDGTLTRMLERG-----SLASLILWGPPGVGKTTIARLLADRA 87

Query: 79  GVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           G+ F   S  V +   DL  +            R +LF+DEIHR +   ++   P +E+ 
Sbjct: 88  GLVFVQISA-VFSGVADLKRVFEEAARRRRTGARTLLFVDEIHRFNRAQQDGFLPVVEEG 146

Query: 133 QLDLM--VGEGPS 143
            + L+    E PS
Sbjct: 147 TITLVGATTENPS 159


>gi|328781990|ref|XP_392923.4| PREDICTED: smallminded [Apis mellifera]
          Length = 939

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ +A E G+NF S  GP
Sbjct: 678 VLLCGPPGCGKTLLAKAIANEAGINFISVKGP 709



 Score = 37.0 bits (84), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 8/65 (12%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDRD------VL 109
           L  GPPG GKT LA  +A ELG+     + P  V   +G+  A +  L ++       V+
Sbjct: 327 LLHGPPGCGKTLLAHAIAGELGIPLLKVAAPELVTGVSGESEARIRELFEQALAIAPCVI 386

Query: 110 FIDEI 114
           F+DEI
Sbjct: 387 FLDEI 391


>gi|227827953|ref|YP_002829733.1| ATPase AAA [Sulfolobus islandicus M.14.25]
 gi|229585220|ref|YP_002843722.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus M.16.27]
 gi|238620179|ref|YP_002915005.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus M.16.4]
 gi|227459749|gb|ACP38435.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus M.14.25]
 gi|228020270|gb|ACP55677.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus M.16.27]
 gi|238381249|gb|ACR42337.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus M.16.4]
 gi|323475040|gb|ADX85646.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus REY15A]
 gi|323477771|gb|ADX83009.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus HVE10/4]
          Length = 759

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 59/136 (43%), Gaps = 17/136 (12%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACS-NLKVFIEAAKARAEALDH-------- 56
           G  S  + QE    +   P+   E  G +E     ++  +E      E   H        
Sbjct: 168 GRTSLEIRQEPVKETAAVPKVTWEDIGDLEDVKEKIREIVELPMRHPEVFQHLGIEPPKG 227

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DV 108
           VL  GPPG+GKT LA+ +A E+G  F S +GP I     G+    L  + +        +
Sbjct: 228 VLLYGPPGVGKTLLARALANEIGAYFTSINGPEIMSKFYGESEQRLREIFEEAEKNAPAI 287

Query: 109 LFIDEIHRLSIIVEEI 124
           +FIDEI  ++   EE+
Sbjct: 288 IFIDEIDAIAPKREEV 303



 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT LA+ VA E G NF +  GP I
Sbjct: 503 ILLFGPPGTGKTMLAKAVATESGANFIAVRGPEI 536


>gi|156938086|ref|YP_001435882.1| replication factor C small subunit [Ignicoccus hospitalis KIN4/I]
 gi|156567070|gb|ABU82475.1| replication factor C small subunit [Ignicoccus hospitalis KIN4/I]
          Length = 329

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 6/63 (9%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81
          RP++L+E   Q +    LK F+E      + + H+LF GPPG GKTT A  +A +L G  
Sbjct: 14 RPKSLDEIVDQEDIVRRLKKFVEE-----KNVPHMLFAGPPGTGKTTAALALAHDLYGEK 68

Query: 82 FRS 84
          +R 
Sbjct: 69 YRQ 71


>gi|326926688|ref|XP_003209530.1| PREDICTED: spermatogenesis-associated protein 5-like protein
           1-like, partial [Meleagris gallopavo]
          Length = 600

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 40/75 (53%), Gaps = 11/75 (14%)

Query: 55  DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLAALLTNL--------- 103
           + VL VGPPG+GKT L + VA+E+G      SGP +  ++ G+    L ++         
Sbjct: 77  NGVLLVGPPGVGKTLLVKAVAKEVGAYLLCVSGPALYGSRPGESEENLRSIFEKGREMSC 136

Query: 104 EDRDVLFIDEIHRLS 118
           E   VLFIDEI  L 
Sbjct: 137 EGPTVLFIDEIDALC 151


>gi|289432058|ref|YP_003461931.1| ATPase AAA [Dehalococcoides sp. GT]
 gi|289432142|ref|YP_003462015.1| ATPase AAA [Dehalococcoides sp. GT]
 gi|288945778|gb|ADC73475.1| ATPase associated with various cellular activities AAA_5
           [Dehalococcoides sp. GT]
 gi|288945862|gb|ADC73559.1| ATPase associated with various cellular activities AAA_5
           [Dehalococcoides sp. GT]
          Length = 308

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 76/162 (46%), Gaps = 9/162 (5%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIH 115
           HV+  GPP L KT     + +  G       G   +KAG L  L+   E +  L IDE+ 
Sbjct: 121 HVMLTGPPALAKTLFLWDIEQTFGEQAIWLVGSATSKAG-LWDLVAEREPK-FLLIDEMD 178

Query: 116 RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
           +++ +    L   ME  +L          R + IN +   +IAA+ R+  L+  L+ RF 
Sbjct: 179 KMNAVDMAALLTMMEGGRL----VRAKRGRELDIN-NPLKVIAASNRLEKLSPELRSRFA 233

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRG 217
           I  +LN Y   +  T+V +G  +   ++ ++ A EIA +  G
Sbjct: 234 IR-KLNAYGRSEFLTVV-KGVLVRKESLPNDLAEEIARKLDG 273


>gi|76801102|ref|YP_326110.1| replication factor C small subunit [Natronomonas pharaonis DSM
          2160]
 gi|83288436|sp|Q3ITJ2|RFCS_NATPD RecName: Full=Replication factor C small subunit; Short=RFC small
          subunit; AltName: Full=Clamp loader small subunit
 gi|76556967|emb|CAI48541.1| replication factor C small subunit I [Natronomonas pharaonis DSM
          2160]
          Length = 325

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 13/82 (15%)

Query: 12 VSQEDAD-------ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
          +S+ DAD       I   RP+TL++  G       LK +I         L H+LF GP G
Sbjct: 1  MSEGDADGGGREIWIEKYRPQTLDDIVGHESITERLKQYIAQND-----LPHLLFAGPAG 55

Query: 65 LGKTTLAQVVAREL-GVNFRST 85
          +GKTT A  +A+E+ G ++R  
Sbjct: 56 VGKTTAATAIAKEVYGDDWREN 77


>gi|332300232|ref|YP_004442153.1| ATP-dependent Clp protease ATP-binding subunit clpX [Porphyromonas
           asaccharolytica DSM 20707]
 gi|332177295|gb|AEE12985.1| ATP-dependent Clp protease ATP-binding subunit clpX [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 439

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL----- 103
           A  +++ VGP G GKT LAQ +AR L V F      V+ +AG    D+ ++++ L     
Sbjct: 137 AKSNIIMVGPTGCGKTLLAQSIARMLQVPFAMVDATVLTQAGYVGEDIESIISRLLQNCD 196

Query: 104 -----EDRDVLFIDEIHRLS 118
                 +R ++FIDEI +++
Sbjct: 197 YDVAAAERGIVFIDEIDKIA 216


>gi|293375579|ref|ZP_06621853.1| recombination factor protein RarA [Turicibacter sanguinis PC909]
 gi|292645796|gb|EFF63832.1| recombination factor protein RarA [Turicibacter sanguinis PC909]
          Length = 421

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 67/147 (45%), Gaps = 16/147 (10%)

Query: 21  LLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           L+RPRTL+E  GQ         L+  IE        + +++F GP G GKTT+A ++A  
Sbjct: 8   LIRPRTLDEVVGQQHLIGEGQILRKLIEV-----NHIPNLIFYGPSGTGKTTIANIIASL 62

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDRD-----VLFIDEIHRLSIIVEEILYPAMEDF 132
                   +    AK  D+  ++++L   +      L++DEI   +   ++ L   +E  
Sbjct: 63  SNKKIYKLNA-TDAKTEDIKQIISSLNTLEGMNGIFLYLDEIQNFNKKQQQTLLKYIETG 121

Query: 133 QLDLMVG--EGPSARSVKINLSRFTLI 157
           Q+ L+    E P        LSR T++
Sbjct: 122 QITLITSTTENPYFTIFSAILSRSTIL 148


>gi|168004780|ref|XP_001755089.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162693682|gb|EDQ80033.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 503

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 6/102 (5%)

Query: 54  LDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDV 108
           L  ++F GPPG GKT+L + +AR +   F + S        + +  + A  +    +R +
Sbjct: 127 LSSIIFWGPPGTGKTSLVRAIARAVSYRFIALSAVSCGLKEVREILEEAKRVRKFGERTL 186

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN 150
           LF+DEIHR +   ++   P +E   + + +G      S +IN
Sbjct: 187 LFLDEIHRFNKSQQDAFLPYVEAGHI-VFIGATTENPSFEIN 227


>gi|121603730|ref|YP_981059.1| ATP-dependent protease La [Polaromonas naphthalenivorans CJ2]
 gi|120592699|gb|ABM36138.1| ATP-dependent protease La [Polaromonas naphthalenivorans CJ2]
          Length = 789

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 70/162 (43%), Gaps = 32/162 (19%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA----------GDLAALLT-NLE 104
           + FVGPPG+GKT+L Q +A  LG  F R + G V  +A          G +  ++  NL 
Sbjct: 357 LCFVGPPGVGKTSLGQSIAHALGRPFVRVSLGGVHDEAEIRGHRRTYIGAMPGMIVQNLR 416

Query: 105 D----RDVLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLS 152
                  V+ +DEI +LS            E+L P       D  +G       V  +LS
Sbjct: 417 KAGARHCVMMLDEIDKLSPSAHGDPSAALLEVLDPEQNSTFRDNYLG-------VPFDLS 469

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           R   +A    +  +  P++DR  + I L  Y  E+   I QR
Sbjct: 470 RVVFVATANVIDQVPAPVRDRMEV-IELPGYTQEEKLQIAQR 510


>gi|325114387|emb|CBZ49944.1| hypothetical protein NCLIV_004280 [Neospora caninum Liverpool]
          Length = 762

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ VA E   NF S  GP +     G+  A + +L D+       V
Sbjct: 503 VLFYGPPGCGKTLLAKAVANECKANFISVKGPELLTMWFGESEANVRDLFDKARAAAPCV 562

Query: 109 LFIDEIHRLS 118
           +F DE+  ++
Sbjct: 563 IFFDEMDSIA 572



 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDRD------V 108
           VL  G  G GKT LA+ +A E G NF + +GP V++K AG+  A L  + +        +
Sbjct: 230 VLLHGSSGCGKTLLAKAIANECGANFLTVNGPEVMSKLAGESEANLRRIFEEAAALSPCL 289

Query: 109 LFIDEIHRLS 118
           LFIDEI  ++
Sbjct: 290 LFIDEIDSIA 299


>gi|302829468|ref|XP_002946301.1| hypothetical protein VOLCADRAFT_78972 [Volvox carteri f.
           nagariensis]
 gi|300269116|gb|EFJ53296.1| hypothetical protein VOLCADRAFT_78972 [Volvox carteri f.
           nagariensis]
          Length = 815

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 8/71 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARGSAPCV 573

Query: 109 LFIDEIHRLSI 119
           LF DE+  +++
Sbjct: 574 LFFDELDSIAV 584



 Score = 38.5 bits (88), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLEDR--DV 108
           +L  GPPG GKT +A+ VA E G  F   +GP I          +L  +    E     +
Sbjct: 241 ILLYGPPGSGKTLIARAVANETGAFFVVVNGPEIMSKLAGESESNLRKVFQEAEKNAPSI 300

Query: 109 LFIDEIHRLS 118
           +FIDE+  ++
Sbjct: 301 IFIDEVDSIA 310


>gi|16124820|ref|NP_419384.1| MoxR protein [Caulobacter crescentus CB15]
 gi|221233538|ref|YP_002515974.1| MoxR-like ATPase [Caulobacter crescentus NA1000]
 gi|13421760|gb|AAK22552.1| MoxR protein [Caulobacter crescentus CB15]
 gi|220962710|gb|ACL94066.1| MoxR-like ATPase [Caulobacter crescentus NA1000]
          Length = 323

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 104/248 (41%), Gaps = 49/248 (19%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +R    +   GQ EA + L V + A         HVL  GPPG  KT LAQ  AR + ++
Sbjct: 18  IRAEIAKAVVGQDEAVNLLLVALFAGG-------HVLLEGPPGTAKTLLAQSFARSVALD 70

Query: 82  F-RSTSGPVIAKAGDLAALLTNLEDR-----------DVLFIDEIHRLSIIVEEILYPAM 129
           + R    P +     + A L N +             ++L  DEI+R     +  L  AM
Sbjct: 71  YGRIQFTPDLTPGDVIGANLFNFQTSTFTLTRGPVFCELLLADEINRTPPKTQAALLEAM 130

Query: 130 EDFQLDLMVGEGPSARSVKINLS-RFTLIAATTRVGLL-TNPLQ----DRFGIPIRLNFY 183
           ++ Q+ +          V   LS RFT++A    +    T PL     DRF     LN+ 
Sbjct: 131 QERQVTI--------DGVSHPLSPRFTVVATQNPIEQQGTYPLPEAQLDRFLFKHVLNYP 182

Query: 184 EIEDLKTIV----QRGAKLTGLA-----VTDEAACEIAM----RSRGTPRIAGR---LLR 227
            IE  + IV    QR  ++   A     V D AA + A+    ++R T  + G    L+R
Sbjct: 183 SIEQERAIVVGHGQRTGQMDPAAFGVEPVLDRAAIDAAVATVAQARLTDEVVGYIVDLVR 242

Query: 228 RVRDFAEV 235
             RD  ++
Sbjct: 243 ATRDSTDI 250


>gi|313885837|ref|ZP_07819580.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312924741|gb|EFR35507.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 439

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL----- 103
           A  +++ VGP G GKT LAQ +AR L V F      V+ +AG    D+ ++++ L     
Sbjct: 137 AKSNIIMVGPTGCGKTLLAQSIARMLQVPFAMVDATVLTQAGYVGEDIESIISRLLQNCD 196

Query: 104 -----EDRDVLFIDEIHRLS 118
                 +R ++FIDEI +++
Sbjct: 197 YDVAAAERGIVFIDEIDKIA 216


>gi|307168241|gb|EFN61467.1| Nuclear valosin-containing protein-like [Camponotus floridanus]
          Length = 943

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ +A E G+NF S  GP
Sbjct: 692 VLLCGPPGCGKTLLAKAIANEAGINFISVKGP 723



 Score = 36.6 bits (83), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 8/65 (12%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDRD------VL 109
           L  GPPG GKT LA  VA EL +     +GP  V   +G+  A + +L ++       V+
Sbjct: 327 LLHGPPGCGKTLLAYAVAGELNMPLLKVAGPELVTGVSGESEARIRDLFEQALTLAPCVV 386

Query: 110 FIDEI 114
           F+DEI
Sbjct: 387 FLDEI 391


>gi|72387706|ref|XP_844277.1| RuvB-like DNA helicase [Trypanosoma brucei TREU927]
 gi|62359429|gb|AAX79866.1| RuvB-like DNA helicase, putative [Trypanosoma brucei]
 gi|70800810|gb|AAZ10718.1| RuvB-like DNA helicase, putative [Trypanosoma brucei brucei
          strain 927/4 GUTat10.1]
 gi|261327430|emb|CBH10405.1| ruvB-like DNA helicase, putative [Trypanosoma brucei gambiense
          DAL972]
          Length = 459

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 38/64 (59%), Gaps = 2/64 (3%)

Query: 16 DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
          DAD  + +P T + F GQV+A     + +E  + +  A   +LF GPPG GKT LA  VA
Sbjct: 30 DAD-GVAKP-TADGFVGQVKAREAAGIVVELTRTKKMAGRALLFAGPPGTGKTALALGVA 87

Query: 76 RELG 79
          +ELG
Sbjct: 88 KELG 91


>gi|193713874|ref|XP_001948376.1| PREDICTED: nuclear valosin-containing protein-like [Acyrthosiphon
           pisum]
          Length = 792

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E G+NF S  GP
Sbjct: 550 VLLCGPPGCGKTLLAKAVANEAGINFISIKGP 581



 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 8/69 (11%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDRD------VL 109
           L  GPPG GKT LAQ VA EL +   S + P  V+  +G+    +  L +        VL
Sbjct: 245 LLHGPPGCGKTLLAQAVAGELKIPLISIAAPQLVVGISGESEKRVRKLFETAVKSAPCVL 304

Query: 110 FIDEIHRLS 118
           FIDE+  +S
Sbjct: 305 FIDEVDSIS 313


>gi|126179196|ref|YP_001047161.1| replication factor C small subunit [Methanoculleus marisnigri JR1]
 gi|150415672|sp|A3CUX9|RFCS_METMJ RecName: Full=Replication factor C small subunit; Short=RFC small
           subunit; AltName: Full=Clamp loader small subunit
 gi|125861990|gb|ABN57179.1| replication factor C small subunit [Methanoculleus marisnigri JR1]
          Length = 322

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 84/222 (37%), Gaps = 47/222 (21%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           I   RPR L+E  GQ +    L+ +++        L H+LF G  G+GKTT A  +ARE 
Sbjct: 9   IEKYRPRRLDEMVGQKDIVVRLQSYVKTGN-----LPHLLFTGSAGIGKTTAAVALAREF 63

Query: 79  -----GVNFRSTSGP-------------VIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
                  NFR  +                 A+   LA          +LF+DE   L+  
Sbjct: 64  FGDSWQTNFREMNASDERGIDVVRNQIKEFARTSPLAGATFK-----ILFLDEADALTTD 118

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            +  L   ME +           AR+ +  LS             + +P+Q R  I  R 
Sbjct: 119 AQAALRRTMETY-----------ARTCRFILS-------CNYSSKIIDPIQSRCAI-YRF 159

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
              + E +    +R A   GL VT+ A   I   + G  R A
Sbjct: 160 RPLDREAVIEETRRIAAAEGLTVTEGALDAIVYVASGDMRKA 201


>gi|291394829|ref|XP_002713855.1| PREDICTED: peroxin1 isoform 2 [Oryctolagus cuniculus]
          Length = 1284

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 21/32 (65%), Positives = 23/32 (71%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT LA VVARE G+NF S  GP
Sbjct: 877 ILLYGPPGTGKTLLAGVVARESGMNFISVKGP 908


>gi|110803416|ref|YP_699072.1| recombination factor protein RarA [Clostridium perfringens SM101]
 gi|110683917|gb|ABG87287.1| ATPase, AAA family [Clostridium perfringens SM101]
          Length = 415

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 69/148 (46%), Gaps = 20/148 (13%)

Query: 21  LLRPRTLEEFTGQVEAC------SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           ++RP+ LE+  GQ          SNL         + + + + +F GPPG+GKTTLA ++
Sbjct: 7   IMRPKKLEDIVGQKHIVGEGTPLSNL--------IKNKNMINCIFYGPPGVGKTTLANII 58

Query: 75  ARELGVNFRSTSGPV--IAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           +      F   +     I +   + + + NL +    +L+IDE+   +   ++ L   +E
Sbjct: 59  SNYTDKKFYKINATTSSIKEIQSITSDIDNLLNFKGIILYIDELQHFNKKQQQALLEFIE 118

Query: 131 DFQLDLMVG--EGPSARSVKINLSRFTL 156
           D ++ L+    E P     K  LSR T+
Sbjct: 119 DGRVILIASTTENPYFAIHKAILSRSTI 146


>gi|290968389|ref|ZP_06559929.1| ATP-dependent protease, Lon family [Megasphaera genomosp. type_1
           str. 28L]
 gi|290781576|gb|EFD94164.1| ATP-dependent protease, Lon family [Megasphaera genomosp. type_1
           str. 28L]
          Length = 635

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 65/249 (26%), Positives = 102/249 (40%), Gaps = 72/249 (28%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEAL--DHVLFVGPPGLGKTTLAQVV---AR 76
           +RP+TL+   GQ  A       +EA +++  ++   H+L  GPPG+GKTT A+++   A+
Sbjct: 170 VRPKTLQAVVGQERA-------VEAMQSKLASVYPQHLLLYGPPGVGKTTAARIILQEAK 222

Query: 77  ELGVNFRSTSGPVIAKAG--------DLA-ALLTNLED-------RD------------- 107
           +L     +   P I   G        D+   LL ++ D       +D             
Sbjct: 223 QLPFTPFAAEAPFIETDGTTLRWDSRDMTNPLLGSVHDPIYQGARKDLADTGIPEPKPGL 282

Query: 108 -------VLFIDEIHRLSIIVEEILYPAMED----FQLDLMVGEGPSARSVKINLSR--- 153
                  +LFIDEI  +  ++   L   +ED    F       E P+  +    L R   
Sbjct: 283 VTEAHGGILFIDEIGEMDPMLLNKLLKVLEDKKVTFDSAYYDEEDPNVPAYIHKLFRDGA 342

Query: 154 ---FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI-------EDLKTIVQRGAKLTGLAV 203
              F LI ATTR     NP        IR    E+       +D++ IV+  AK   +++
Sbjct: 343 PADFILIGATTRDPSEINPA-------IRSRCAEVFFEPLVPQDIEKIVENAAKQLQVSL 395

Query: 204 TDEAACEIA 212
            D  A +IA
Sbjct: 396 ADGVAAKIA 404


>gi|160936366|ref|ZP_02083735.1| hypothetical protein CLOBOL_01258 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440649|gb|EDP18387.1| hypothetical protein CLOBOL_01258 [Clostridium bolteae ATCC
           BAA-613]
          Length = 416

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 62/138 (44%), Gaps = 44/138 (31%)

Query: 17  ADISLLRPRTLEEF-----TGQ-----------------VEACSNLKVFIEAAKARAEAL 54
           ADI LL+P+ ++ F      GQ                 V AC N+ V ++ +       
Sbjct: 40  ADIRLLKPKEIKAFLDEYVIGQDDAKKVLSVAVYNHYKRVTACQNMDVDVQKS------- 92

Query: 55  DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---EDRD 107
            ++L VGP G GKT LAQ +A+ L V F       + +AG    D+  +L  L    D D
Sbjct: 93  -NILMVGPTGSGKTYLAQTLAKILNVPFAIADATALTEAGYVGEDVENILLKLIQAADYD 151

Query: 108 -------VLFIDEIHRLS 118
                  +++IDEI +++
Sbjct: 152 ISRAEYGIIYIDEIDKIT 169


>gi|153813469|ref|ZP_01966137.1| hypothetical protein RUMOBE_03889 [Ruminococcus obeum ATCC 29174]
 gi|149830413|gb|EDM85505.1| hypothetical protein RUMOBE_03889 [Ruminococcus obeum ATCC 29174]
          Length = 437

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 65/131 (49%), Gaps = 28/131 (21%)

Query: 16  DADISLLRP----RTLEEFT-GQVEACSNLKVFIEAAKAR---AEALD------HVLFVG 61
           D+DI+LL+P    + L+++  GQ EA   L V +     R   ++ LD      ++L +G
Sbjct: 60  DSDINLLKPEEIHKILDDYVIGQDEAKKALSVAVYNHYKRITASKNLDVELQKSNILMLG 119

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRD------- 107
           P G GKT LAQ +AR L V F       + +AG +   + N+        D D       
Sbjct: 120 PTGSGKTLLAQTLARLLNVPFAIADATTLTEAGYVGEDVENILLKIIQAADYDIERAQYG 179

Query: 108 VLFIDEIHRLS 118
           +++IDEI +++
Sbjct: 180 IIYIDEIDKIT 190


>gi|291394827|ref|XP_002713854.1| PREDICTED: peroxin1 isoform 1 [Oryctolagus cuniculus]
          Length = 1244

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 21/32 (65%), Positives = 23/32 (71%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT LA VVARE G+NF S  GP
Sbjct: 837 ILLYGPPGTGKTLLAGVVARESGMNFISVKGP 868


>gi|240850808|ref|YP_002972208.1| recombination factor protein RarA [Bartonella grahamii as4aup]
 gi|240267931|gb|ACS51519.1| recombination factor protein RarA [Bartonella grahamii as4aup]
          Length = 439

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 7/85 (8%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DR 106
           ++  ++F GPPG GKTT+A+++A E    F   S  +     +L  +    +      D+
Sbjct: 53  SIGSMIFWGPPGTGKTTVARLLALETSFAFEQVSA-IFTGVSELKKIFEVAQRRFISGDK 111

Query: 107 DVLFIDEIHRLSIIVEEILYPAMED 131
            +LF+DEIHR +   ++     ME+
Sbjct: 112 TLLFVDEIHRFNRAQQDSFLSVMEE 136


>gi|219684238|ref|ZP_03539182.1| DNA polymerase III, subunits gamma and tau [Borrelia garinii PBr]
 gi|219672227|gb|EED29280.1| DNA polymerase III, subunits gamma and tau [Borrelia garinii PBr]
          Length = 560

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 93/227 (40%), Gaps = 25/227 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPR      GQ      LK  IE  K  A A    +F GP G+GKT+ A+  AR L    
Sbjct: 12  RPRDFNSLEGQDFVVETLKHSIEKNKI-ANAY---IFSGPRGVGKTSSARAFARCLNC-- 65

Query: 83  RSTSGPVIAKAGDL--AALLTNLEDRDVLFIDEIHRLSI-----IVEEILY-PAMEDF-- 132
              +GP +   G+      + N    DV+ ID     S+     I EEI++ PA+  +  
Sbjct: 66  --KNGPTVMPCGECNNCKSIDNDSSLDVIEIDGASNTSVQDIRQIKEEIMFPPAVSKYRI 123

Query: 133 ----QLDLMVGEGPSA--RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
               ++ ++     +A  ++++        I ATT    L   ++ R           +E
Sbjct: 124 YIIDEVHMLSNSAFNALLKTIEEPPHYIVFIFATTESHKLPETIKSRCQ-HFSFKLLSLE 182

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
            +  ++++      +   DEA   IA +S G+ R A  L  +V  F 
Sbjct: 183 KIYNMLKKVCFEDHIKYEDEALKWIAYKSSGSVRDAYTLFDQVVSFT 229


>gi|226321772|ref|ZP_03797298.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi
           Bol26]
 gi|226232961|gb|EEH31714.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi
           Bol26]
          Length = 560

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 98/230 (42%), Gaps = 29/230 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPR      GQ      LK  IE  K  A A    +F GP G+GKT+ A+  AR L    
Sbjct: 12  RPRDFNSLEGQDFVVETLKHSIEKNKI-ANAY---IFSGPRGVGKTSSARAFARCLNC-- 65

Query: 83  RSTSGPVIAKAGDLAAL--LTNLEDRDVLFIDEIHRLSI-----IVEEILY-PAMEDF-- 132
              +GP +   G+ +    + N    DV+ ID     S+     I EEI++ PA+  +  
Sbjct: 66  --RNGPTVMPCGECSNCKSIENDSSLDVVEIDGASNTSVQDIRQIKEEIMFPPAISKYRI 123

Query: 133 ----QLDLMVGEGPSA--RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF--YE 184
               ++ ++     +A  ++++   +    I ATT    L   ++ R       NF    
Sbjct: 124 YIIDEVHMLSNSAFNALLKTIEEPPNYIVFIFATTESHKLPETIKSRCQ---HFNFKLLS 180

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
           ++ +  ++++      +   DEA   IA +S G+ R A  L  ++  F +
Sbjct: 181 LDKIYNMLKKVCLEDDIKYEDEALKWIAYKSSGSVRDAYTLFDQIVSFTD 230


>gi|316970918|gb|EFV54772.1| conserved hypothetical protein [Trichinella spiralis]
          Length = 1261

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 30/50 (60%)

Query: 30  FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           F GQVEA +   V ++  K +  A   VL  GPPG GKT +A  +ARELG
Sbjct: 143 FVGQVEARTAAGVIVDLVKMKRMAGRAVLLAGPPGTGKTAIALAIARELG 192


>gi|282851622|ref|ZP_06260987.1| recombination factor protein RarA [Lactobacillus gasseri 224-1]
 gi|282557590|gb|EFB63187.1| recombination factor protein RarA [Lactobacillus gasseri 224-1]
          Length = 401

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 15/88 (17%)

Query: 51  AEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP--------VIAKAGDLAALLTN 102
           A+ L  ++  GPPG+GKT++A  +A      FR  +          ++A+ G ++  +  
Sbjct: 4   AKLLSSMILYGPPGIGKTSIASAIAGSTKYAFRKLNAATDTKKDLQIVAEEGKMSGTV-- 61

Query: 103 LEDRDVLFIDEIHRLSIIVEEILYPAME 130
                +L +DEIHRL    ++ L P +E
Sbjct: 62  -----ILLLDEIHRLDKTKQDFLLPLLE 84


>gi|56419849|ref|YP_147167.1| spore formation protein [Geobacillus kaustophilus HTA426]
 gi|261419520|ref|YP_003253202.1| stage V sporulation protein K [Geobacillus sp. Y412MC61]
 gi|297530510|ref|YP_003671785.1| stage V sporulation protein K [Geobacillus sp. C56-T3]
 gi|319766336|ref|YP_004131837.1| stage V sporulation protein K [Geobacillus sp. Y412MC52]
 gi|56379691|dbj|BAD75599.1| spore formation protein [Geobacillus kaustophilus HTA426]
 gi|261375977|gb|ACX78720.1| stage V sporulation protein K [Geobacillus sp. Y412MC61]
 gi|297253762|gb|ADI27208.1| stage V sporulation protein K [Geobacillus sp. C56-T3]
 gi|317111202|gb|ADU93694.1| stage V sporulation protein K [Geobacillus sp. Y412MC52]
          Length = 310

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 94/221 (42%), Gaps = 40/221 (18%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVAR-ELGVNFRSTSGPVIAKAGDLAALL---TNL 103
           KA  +AL H++F G PG GKTT+A+++ +    +N  S    + A+  DL       T  
Sbjct: 81  KANRQAL-HMIFKGNPGTGKTTVARLLGKLFFEMNVLSKGHFIEAERADLVGEYIGHTAS 139

Query: 104 EDRD--------VLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSV 147
           + RD        +LFIDE + L+   E        + L   MED+  DL+V      + +
Sbjct: 140 KTRDLIKKARGGILFIDEAYSLARGGEKDFGKEAIDTLVKGMEDYCDDLVVILAGYPKEM 199

Query: 148 KINLSRFTLIAATTRVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDE 206
              LS               NP L  RF + I    Y +E+L  I ++  +     +T E
Sbjct: 200 DYFLS--------------LNPGLPSRFPLTIEFPDYTVEELVQIAKQMLREREYEMTPE 245

Query: 207 AACEIAMRSRGTPRIAGRLL----RRVRDFAEVAHAKTITR 243
           A  ++ +   GT    GRL     R VR+  E A  K   R
Sbjct: 246 AERKLYIHLEGTLEATGRLKFSNGRYVRNLIEKAIRKQAVR 286


>gi|158295544|ref|XP_316268.4| AGAP006205-PA [Anopheles gambiae str. PEST]
 gi|157016089|gb|EAA10786.4| AGAP006205-PA [Anopheles gambiae str. PEST]
          Length = 1020

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E G+NF S  GP
Sbjct: 769 VLLCGPPGCGKTLLAKAVANEAGINFISVKGP 800


>gi|195952935|ref|YP_002121225.1| ATP-dependent protease La [Hydrogenobaculum sp. Y04AAS1]
 gi|195932547|gb|ACG57247.1| ATP-dependent protease La [Hydrogenobaculum sp. Y04AAS1]
          Length = 807

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 83/211 (39%), Gaps = 43/211 (20%)

Query: 59  FVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA---GDLAALLTNLEDRDV------ 108
           F+GPPG+GKT+L Q +A+  G  F R + G +  +A   G     +  +  R +      
Sbjct: 367 FIGPPGVGKTSLGQSIAKATGRKFVRISLGGIRDEAEIRGHRRTYVGAMPGRIIQAIKQA 426

Query: 109 ------LFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLSRF 154
                 + +DEI +LS+  +        E+L P       DL +G          +LS  
Sbjct: 427 GVKNPLIMLDEIDKLSVSFQGDPAAALLEVLDPEQNKSFTDLYIGH-------PFDLSEV 479

Query: 155 TLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK---------TIVQRGAKLTGLAVTD 205
             +A   RV  +  PL DR  +     + E E L           I   G K + + + D
Sbjct: 480 LFVATGNRVDTIPQPLLDRMEVLYLSGYSEEEKLHIAKNHLLPAIIKDHGFKESEINIED 539

Query: 206 EAACEI---AMRSRGTPRIAGRLLRRVRDFA 233
           EA  E+     R  G   +  +L   +R  A
Sbjct: 540 EAILEVIRSYTREAGVRNLKQKLASLLRKLA 570


>gi|195428164|ref|XP_002062144.1| GK17377 [Drosophila willistoni]
 gi|194158229|gb|EDW73130.1| GK17377 [Drosophila willistoni]
          Length = 1001

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ +A E G+NF S  GP
Sbjct: 748 VLLCGPPGCGKTLLAKAIANEAGINFISVKGP 779


>gi|295109357|emb|CBL23310.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Ruminococcus
           obeum A2-162]
          Length = 437

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 64/131 (48%), Gaps = 28/131 (21%)

Query: 16  DADISLLRP----RTLEEFT-GQVEACSNLKVFIEAAKARAEA---LD------HVLFVG 61
           D+DI+LL+P    + L+++  GQ EA   L V +     R  A   LD      ++L +G
Sbjct: 60  DSDINLLKPEEIHKILDDYVIGQDEAKKALSVAVYNHYKRITASRNLDVELQKSNILMLG 119

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRD------- 107
           P G GKT LAQ +AR L V F       + +AG +   + N+        D D       
Sbjct: 120 PTGSGKTLLAQTLARLLNVPFAIADATTLTEAGYVGEDVENILLKIIQAADYDIERAQYG 179

Query: 108 VLFIDEIHRLS 118
           +++IDEI +++
Sbjct: 180 IIYIDEIDKIT 190


>gi|194751155|ref|XP_001957892.1| GF10639 [Drosophila ananassae]
 gi|190625174|gb|EDV40698.1| GF10639 [Drosophila ananassae]
          Length = 972

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ +A E G+NF S  GP
Sbjct: 727 VLLCGPPGCGKTLLAKAIANEAGINFISVKGP 758


>gi|312115420|ref|YP_004013016.1| ATP-dependent protease La [Rhodomicrobium vannielii ATCC 17100]
 gi|311220549|gb|ADP71917.1| ATP-dependent protease La [Rhodomicrobium vannielii ATCC 17100]
          Length = 803

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 73/162 (45%), Gaps = 32/162 (19%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           + FVGPPG+GKT+L Q +AR +   F R + G V  +A              G++   + 
Sbjct: 371 LCFVGPPGVGKTSLGQSIARAMERPFVRVSLGGVHDEAEIRGHRRTYIGSLPGNIIQGIK 430

Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLS 152
               R+ V+ +DEI ++   ++        E+L P   +   D  +G       V  +LS
Sbjct: 431 KAGQRNAVMMLDEIDKMGRGIQGDPFAAMLEVLDPEQNNTFRDAYLG-------VPFDLS 483

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           R T IA    +  +  PL DR  I I+L  Y  ++   I +R
Sbjct: 484 RVTFIATANMLDTIPGPLLDRMEI-IQLAGYTAKEKLEIAKR 524


>gi|229828303|ref|ZP_04454372.1| hypothetical protein GCWU000342_00361 [Shuttleworthia satelles DSM
           14600]
 gi|229792897|gb|EEP29011.1| hypothetical protein GCWU000342_00361 [Shuttleworthia satelles DSM
           14600]
          Length = 419

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 63/139 (45%), Gaps = 28/139 (20%)

Query: 14  QEDADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEALD---------HVLF 59
           +E  +I+L +P+ L+ F      GQ EA   L V +     R    D         +VL 
Sbjct: 64  RESFEINLKKPKELKAFLDEYVIGQDEAKKVLSVAVYNHYKRIMRGDKTDVELQKSNVLM 123

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDV---- 108
           +GP G GKT LAQ +AR LGV F       + +AG +   + N+        D DV    
Sbjct: 124 LGPTGSGKTLLAQTLARTLGVPFAIADATTLTEAGYVGEDVENIILKLIQAADYDVEKAQ 183

Query: 109 ---LFIDEIHRLSIIVEEI 124
              ++IDEI +++   E +
Sbjct: 184 LGIIYIDEIDKITKKSENV 202


>gi|94266600|ref|ZP_01290282.1| ClpX, ATPase regulatory subunit [delta proteobacterium MLMS-1]
 gi|93452771|gb|EAT03309.1| ClpX, ATPase regulatory subunit [delta proteobacterium MLMS-1]
          Length = 419

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 59/135 (43%), Gaps = 31/135 (22%)

Query: 15  EDADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEA------------LDHV 57
           EDA   +L+P  ++E       GQ  A  +L V +     R E               ++
Sbjct: 56  EDAAGQILKPMEIKELLDEYVVGQERAKRSLAVAVHNHYKRVEGEAGEDFRDVELQKSNI 115

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---------- 103
           L +GP G GKT LAQ +AR L V F       + +AG    D+  +L NL          
Sbjct: 116 LLIGPTGSGKTLLAQTLARILNVPFTIADATTLTEAGYVGEDVENILVNLMQAADNDPER 175

Query: 104 EDRDVLFIDEIHRLS 118
             R +++IDEI +++
Sbjct: 176 ASRGIVYIDEIDKIA 190


>gi|83319965|ref|YP_424487.1| recombination factor protein RarA [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
 gi|83283851|gb|ABC01783.1| ATPase, AAA family, putative [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
          Length = 412

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 58/113 (51%), Gaps = 7/113 (6%)

Query: 21  LLRPRTLEEFTGQVEAC-SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           LLRP++ ++  GQ E   SN  +          +L   +F GP G+GKT+ A  +A +L 
Sbjct: 8   LLRPKSTKDIIGQTEILKSNGLINKMILNNYCTSL---IFFGPSGVGKTSFAISLANDLK 64

Query: 80  VNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIHRLSIIVEEILYPAME 130
           ++    +     K   L  ++ N   ++R +L IDEIHRL+   ++IL   ME
Sbjct: 65  IDCEIFNASY-DKKEKLINIIQNALKKERFILIIDEIHRLNKDKQDILLEYME 116


>gi|13508410|ref|NP_110360.1| cell division protein FtsH [Mycoplasma pneumoniae M129]
 gi|2492509|sp|P75120|FTSH_MYCPN RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|1673833|gb|AAB95819.1| cell division protein FtsH [Mycoplasma pneumoniae M129]
 gi|301633109|gb|ADK86663.1| ATP-dependent metallopeptidase HflB [Mycoplasma pneumoniae FH]
          Length = 709

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 105/217 (48%), Gaps = 26/217 (11%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           EE    +E    LK  ++ A+  A +   V+  GPPG GKT LA+ VA E GV F  ++G
Sbjct: 235 EEKHELLEIVDYLKNPLKYAQMGARSPRGVILYGPPGTGKTLLAKAVAGEAGVPFFQSTG 294

Query: 88  PVIAK--AGDLAALLTNLEDRD------VLFIDEIHRLSII---VEEILYPAMEDFQLDL 136
                   G  A  + +L ++       ++FIDEI  +      VE   Y  +E   L+ 
Sbjct: 295 SGFEDMLVGVGAKRVRDLFNKAKKAAPCIIFIDEIDSVGSKRGRVELSSYSVVEQ-TLNQ 353

Query: 137 MVGE--GPSARSVKINLSRFTLIAATTRVGLLTNPL--QDRFGIPIRLNFYEIEDLKTIV 192
           ++ E  G ++R+  +      ++AAT R+ +L + L    RF   I++N  +I++ + I+
Sbjct: 354 LLAEMDGFTSRTGVV------VMAATNRLDVLDDALLRPGRFDRHIQINLPDIKEREGIL 407

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           Q  AK   L+ +  +  ++A R   TP  +G  L  V
Sbjct: 408 QVHAKNKNLS-SKISLLDVAKR---TPGFSGAQLENV 440


>gi|195150721|ref|XP_002016299.1| GL11509 [Drosophila persimilis]
 gi|194110146|gb|EDW32189.1| GL11509 [Drosophila persimilis]
          Length = 626

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 511 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDILDKARSAAPCV 570

Query: 109 LFIDEIHRLS 118
           LF+DE+  ++
Sbjct: 571 LFLDELDSIA 580



 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 238 ILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAI 297

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 298 IFIDEI 303


>gi|332796205|ref|YP_004457705.1| AAA ATPase central domain-containing protein [Acidianus
          hospitalis W1]
 gi|332693940|gb|AEE93407.1| AAA ATPase central domain protein [Acidianus hospitalis W1]
          Length = 450

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 33/58 (56%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
          RP++L +   Q +    LK +IE+  +       +L  GPPG GKTTLAQ +A + G+
Sbjct: 10 RPKSLNDVENQDDVKQELKRWIESWLSGKPENKALLLYGPPGTGKTTLAQALAHDYGL 67


>gi|302037219|ref|YP_003797541.1| ATP-dependent protease La [Candidatus Nitrospira defluvii]
 gi|300605283|emb|CBK41616.1| ATP-dependent protease La [Candidatus Nitrospira defluvii]
          Length = 798

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 86/214 (40%), Gaps = 41/214 (19%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKT 68
           +  S+E  D++ +R    E+  G  E    +   +   K    A   +L  VGPPG+GKT
Sbjct: 307 KKSSEEGLDLAHVRKVLNEDHYGIKEVKERIVEHLAVLKLNPSAKAPILCLVGPPGVGKT 366

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDL----------------AALLTNLEDRDVLFID 112
           +L Q +A+ +G  F   S   +   G+L                 A+     +  V+ +D
Sbjct: 367 SLGQSIAKAMGRTFERFSLGGLHDEGELRGHRRTYVGALPGRIIQAVRRAGVNNPVIMLD 426

Query: 113 EIHRL--------SIIVEEILYPAME----DFQLDLMVGEGPSARSVKINLSRFTLIAAT 160
           E+ +L        +  + EIL PA      D  LDL             +LS+   I   
Sbjct: 427 EVDKLGRDFRGDPAAALLEILDPAQNHTFRDHYLDL-----------PFDLSKVFFITTA 475

Query: 161 TRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
             +  L+ PL DR  I IRLN Y   + + I  R
Sbjct: 476 NTLETLSQPLLDRMEI-IRLNGYSEREKREIALR 508


>gi|95007473|emb|CAJ20695.1| transitional endoplasmic reticulum ATPase [Toxoplasma gondii RH]
          Length = 792

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ VA E   NF S  GP +     G+  A + +L D+       V
Sbjct: 513 VLFFGPPGCGKTLLAKAVANECKANFISVKGPELLTMWFGESEANVRDLFDKARAAAPCV 572

Query: 109 LFIDEIHRLS 118
           +F DE+  ++
Sbjct: 573 IFFDEMDSIA 582



 Score = 40.0 bits (92), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDRD------V 108
           VL  G  G GKT LA+ +A E G NF + +GP V++K AG+  A L  + +        +
Sbjct: 237 VLLHGSSGCGKTLLAKAIANECGANFLTVNGPEVMSKLAGESEANLRRIFEEAAALSPCL 296

Query: 109 LFIDEIHRLS 118
           LFIDEI  ++
Sbjct: 297 LFIDEIDSIA 306


>gi|313500332|gb|ADR61698.1| Lon_2 [Pseudomonas putida BIRD-1]
          Length = 805

 Score = 45.4 bits (106), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 79/189 (41%), Gaps = 50/189 (26%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAKAGDLAALLT 101
           VL VGPPG+GKT++ + +A  LG  F   S                 + A+ G L   L 
Sbjct: 387 VLLVGPPGVGKTSIGKSIAESLGRPFYRFSVGGMRDEAEIKGHRRTYIGAQPGKLVQALK 446

Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAME----DFQLDLMVGEGPSARSVK 148
           ++E  + V+ +DEI ++    +        E L P       D  LDL           +
Sbjct: 447 DVEVMNPVIMLDEIDKMGQSYQGDPASALLETLDPEQNVDFLDHYLDL-----------R 495

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR----------GAKL 198
           ++LS+   +     +  +  PL DR  + IRL+ Y  E+  TI +R          G   
Sbjct: 496 LDLSKVLFVCTANTLDSIPGPLLDRMEV-IRLSGYITEEKLTIAKRHLWPKQLEKAGVSK 554

Query: 199 TGLAVTDEA 207
           T L+++D A
Sbjct: 555 TSLSISDSA 563


>gi|41614964|ref|NP_963462.1| replication factor C small subunit [Nanoarchaeum equitans Kin4-M]
 gi|42559422|sp|P60374|RFCS_NANEQ RecName: Full=Replication factor C small subunit; Short=RFC small
          subunit; AltName: Full=Clamp loader small subunit
 gi|40068688|gb|AAR39023.1| NEQ170 [Nanoarchaeum equitans Kin4-M]
          Length = 322

 Score = 45.4 bits (106), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+ +++   Q E    LK F+E      + + H+LF GPPG GKTT A  +A EL
Sbjct: 9  RPKRIDDIINQEEIKKALKSFVEK-----KNMPHLLFAGPPGTGKTTAALALAHEL 59


>gi|242036965|ref|XP_002465877.1| hypothetical protein SORBIDRAFT_01g047440 [Sorghum bicolor]
 gi|241919731|gb|EER92875.1| hypothetical protein SORBIDRAFT_01g047440 [Sorghum bicolor]
          Length = 712

 Score = 45.4 bits (106), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 8/71 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 426 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARQSAPCV 485

Query: 109 LFIDEIHRLSI 119
           LF DE+  +++
Sbjct: 486 LFFDELDSIAM 496


>gi|302784052|ref|XP_002973798.1| hypothetical protein SELMODRAFT_640 [Selaginella moellendorffii]
 gi|300158130|gb|EFJ24753.1| hypothetical protein SELMODRAFT_640 [Selaginella moellendorffii]
          Length = 494

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDR------DV 108
           VL  GPPG GKT+LAQ VA+E GV     +GP  V    G+  A +  + D        V
Sbjct: 40  VLLYGPPGTGKTSLAQAVAKEAGVKMLVINGPEIVTEYHGESEAAMKAIFDSAAREAPSV 99

Query: 109 LFIDEI 114
           +FIDE+
Sbjct: 100 VFIDEL 105



 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 8/71 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--------AKAGDLAALLTNLEDRDV 108
           VL  GPPG  KT +A+ VA E G+NF +  GP +         KA              V
Sbjct: 306 VLLYGPPGCSKTMMARAVAAETGLNFIAVKGPELFSKWVGESEKAVRALFARAKAAAPSV 365

Query: 109 LFIDEIHRLSI 119
           +F DEI  L++
Sbjct: 366 VFFDEIDGLAV 376


>gi|254567680|ref|XP_002490950.1| Subunit of heteropentameric Replication factor C (RF-C), which is
          a DNA binding protein and ATPase t [Pichia pastoris
          GS115]
 gi|238030747|emb|CAY68670.1| Subunit of heteropentameric Replication factor C (RF-C), which is
          a DNA binding protein and ATPase t [Pichia pastoris
          GS115]
 gi|328352517|emb|CCA38916.1| replication factor C subunit 3/5 [Pichia pastoris CBS 7435]
          Length = 332

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 6/63 (9%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81
          RP +L+   GQ +    ++ F++  +     L H+LF GPPG GKT+    +A+E+ G N
Sbjct: 19 RPSSLDYVYGQHDTVDTVRKFVQDGR-----LPHLLFYGPPGTGKTSTIMALAKEIYGKN 73

Query: 82 FRS 84
          +R+
Sbjct: 74 YRN 76


>gi|260830274|ref|XP_002610086.1| hypothetical protein BRAFLDRAFT_125661 [Branchiostoma floridae]
 gi|229295449|gb|EEN66096.1| hypothetical protein BRAFLDRAFT_125661 [Branchiostoma floridae]
          Length = 854

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ +A E GVNF S  GP
Sbjct: 608 VLLAGPPGCGKTLLAKAIANESGVNFISVKGP 639


>gi|224534688|ref|ZP_03675260.1| DNA polymerase III, subunits gamma and tau [Borrelia spielmanii
           A14S]
 gi|224513936|gb|EEF84258.1| DNA polymerase III, subunits gamma and tau [Borrelia spielmanii
           A14S]
          Length = 561

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 93/227 (40%), Gaps = 25/227 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPR      GQ      LK  IE  K      +  +F GP G+GKT+ A+  AR L    
Sbjct: 12  RPRDFNSLEGQDFVVETLKHSIEKNKIA----NAYIFSGPRGVGKTSSARAFARCLNC-- 65

Query: 83  RSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSI-----IVEEILY-PAMEDF-- 132
              +GP +   G+     +   D   DV+ ID     S+     I EEI++ PA+  +  
Sbjct: 66  --KNGPAVMPCGECNNCKSIDSDSSLDVIEIDGASNTSVQDIRQIKEEIMFPPAISKYRI 123

Query: 133 ----QLDLMVGEGPSA--RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
               ++ ++     +A  ++++   S    I ATT    L   ++ R           +E
Sbjct: 124 YIIDEVHMLSNSAFNALLKTIEEPPSYIVFIFATTESHKLPETIKSRCQ-HFSFKLLSLE 182

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
            +  ++++      +   DEA   IA +S G+ R A  L  +V  F 
Sbjct: 183 KIYNMLKKVCFEDHIKYEDEALKWIAYKSGGSVRDAYTLFDQVVSFT 229


>gi|94264492|ref|ZP_01288279.1| ClpX, ATPase regulatory subunit [delta proteobacterium MLMS-1]
 gi|93455051|gb|EAT05278.1| ClpX, ATPase regulatory subunit [delta proteobacterium MLMS-1]
          Length = 419

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 59/135 (43%), Gaps = 31/135 (22%)

Query: 15  EDADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEA------------LDHV 57
           EDA   +L+P  ++E       GQ  A  +L V +     R E               ++
Sbjct: 56  EDAAGQILKPMEIKELLDEYVVGQERAKRSLAVAVHNHYKRVEGEAGEDFRDVELQKSNI 115

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---------- 103
           L +GP G GKT LAQ +AR L V F       + +AG    D+  +L NL          
Sbjct: 116 LLIGPTGSGKTLLAQTLARILNVPFTIADATTLTEAGYVGEDVENILVNLMQAADNDPER 175

Query: 104 EDRDVLFIDEIHRLS 118
             R +++IDEI +++
Sbjct: 176 ASRGIVYIDEIDKIA 190


>gi|157822837|ref|NP_001102690.1| peroxisome biogenesis factor 1 [Rattus norvegicus]
 gi|149029073|gb|EDL84367.1| similar to peroxisome biogenesis factor 1 (predicted) [Rattus
           norvegicus]
          Length = 1283

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 21/32 (65%), Positives = 23/32 (71%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT LA VVARE G+NF S  GP
Sbjct: 877 ILLYGPPGTGKTLLAGVVARESGMNFISIQGP 908


>gi|326514984|dbj|BAJ99853.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 826

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 8/71 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VL  GPPG GKT LA+ +ARE   NF S  GP +     G+  + + +L D+       V
Sbjct: 547 VLLYGPPGCGKTLLAKAIARECKANFISVKGPELLTMWFGESESNVRDLFDKARQSAPCV 606

Query: 109 LFIDEIHRLSI 119
           LF DE+  +++
Sbjct: 607 LFFDELDSIAV 617



 Score = 40.0 bits (92), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AG----DLAALLTNLEDR--DV 108
           +L  GPPG GKT LA+ +A E G NF   +GP I    AG    +L  +    E +   +
Sbjct: 273 ILLYGPPGTGKTLLARAIAAESGANFVVINGPEIMSMMAGQSEDNLRKVFAQAEAQAPSI 332

Query: 109 LFIDEIHRLS 118
           +F+DEI  ++
Sbjct: 333 IFMDEIDAIA 342


>gi|118095837|ref|XP_001233697.1| PREDICTED: hypothetical protein [Gallus gallus]
          Length = 443

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 38/75 (50%), Gaps = 11/75 (14%)

Query: 55  DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLAALL---------TNL 103
           + VL VGPPG+GKT L + VARE G      SGP +  ++ G+    L          + 
Sbjct: 305 NGVLLVGPPGVGKTLLVKAVAREAGAYLLCISGPALYGSRPGESEENLRSVFEKGREMSC 364

Query: 104 EDRDVLFIDEIHRLS 118
           E   VLFIDEI  L 
Sbjct: 365 EGPTVLFIDEIDALC 379


>gi|219847996|ref|YP_002462429.1| ATP-dependent protease La [Chloroflexus aggregans DSM 9485]
 gi|302425095|sp|B8G736|LON_CHLAD RecName: Full=Lon protease; AltName: Full=ATP-dependent protease La
 gi|219542255|gb|ACL23993.1| ATP-dependent protease La [Chloroflexus aggregans DSM 9485]
          Length = 824

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 92/217 (42%), Gaps = 45/217 (20%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           + FVGPPG+GKT+L + +AR LG  F R++ G V  +A              G +   + 
Sbjct: 371 LCFVGPPGVGKTSLGRSIARALGRKFVRTSLGGVRDEAEIRGHRRTYIGAMPGRIIQAMK 430

Query: 102 NLEDRDVLFI-DEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLS 152
           N + +  ++I DE+ ++ +           E+L P   +   D  +        +  +LS
Sbjct: 431 NAKSKSPVYILDEVDKIGLDFRGDPTSALLEVLDPEQNNAFSDHYL-------EIPFDLS 483

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG---AKLTGLAVTDEAAC 209
           +   IA   ++  +  PL+DR  I I +  Y  ED K  + RG    K        E   
Sbjct: 484 KVIFIATANQLDPIPLPLRDRMEI-IEIGGY-TEDEKLEIARGFLIPKQREFHGLTEDQI 541

Query: 210 EIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           E            G +L+ +R++   A  + + REIA
Sbjct: 542 EFT---------EGAILKLIREYTREAGVRGLEREIA 569


>gi|330834115|ref|YP_004408843.1| replication factor C small subunit [Metallosphaera cuprina Ar-4]
 gi|329566254|gb|AEB94359.1| replication factor C small subunit [Metallosphaera cuprina Ar-4]
          Length = 325

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 6/61 (9%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81
          RPRTL++   Q +    LK F+     +   + H+LF GPPG GKTT A  +  +L G N
Sbjct: 11 RPRTLDDIVNQKDIVDRLKRFV-----KERNMPHLLFAGPPGTGKTTSALALVHDLYGEN 65

Query: 82 F 82
          +
Sbjct: 66 Y 66


>gi|268611208|ref|ZP_06144935.1| recombination factor protein RarA [Ruminococcus flavefaciens FD-1]
          Length = 423

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 74/146 (50%), Gaps = 16/146 (10%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP+TL +  GQ    ++   L+  I++       + +++F GP G+GKTT+A+++A   
Sbjct: 9   IRPKTLADVVGQEHILADGKPLRRIIDSG-----TVPNMIFYGPSGVGKTTVARIIAENC 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNL-----EDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           G++    +G   A   D+  ++ ++     E+  +L++DEI  L+   ++ L   +E+  
Sbjct: 64  GMSLYKLNG-TNASISDIKDVVADIGTFGSENGILLYLDEIQYLNKKQQQSLLEYIENGD 122

Query: 134 LDLMVG--EGPSARSVKINLSRFTLI 157
           + L+    E P        +SR T+ 
Sbjct: 123 ITLIASTTENPYFSVYNAVISRSTVF 148


>gi|194865492|ref|XP_001971456.1| GG14421 [Drosophila erecta]
 gi|190653239|gb|EDV50482.1| GG14421 [Drosophila erecta]
          Length = 935

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ +A E G+NF S  GP
Sbjct: 690 VLLCGPPGCGKTLLAKAIANEAGINFISVKGP 721


>gi|195338165|ref|XP_002035696.1| GM14837 [Drosophila sechellia]
 gi|194128789|gb|EDW50832.1| GM14837 [Drosophila sechellia]
          Length = 944

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ +A E G+NF S  GP
Sbjct: 699 VLLCGPPGCGKTLLAKAIANEAGINFISVKGP 730


>gi|294788556|ref|ZP_06753798.1| magnesium chelatase, subunit ChlI family [Simonsiella muelleri ATCC
           29453]
 gi|294483433|gb|EFG31118.1| magnesium chelatase, subunit ChlI family [Simonsiella muelleri ATCC
           29453]
          Length = 442

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 68/156 (43%), Gaps = 17/156 (10%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH-VLFVGPPGLGKTTLAQVVARELGV 80
           LRP+ L +  GQ       K     + A A  + H ++  G  G+GKTTLAQ++A     
Sbjct: 23  LRPKILSDVVGQQHLIGEGKPL---SVAIASGVPHSMILWGATGVGKTTLAQIIANSFDA 79

Query: 81  NFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
            F S S        I +A   A L      R ++F+DE+HR +   ++   P +E   L 
Sbjct: 80  QFISLSAVFSGVKEIREAVLKAELAWQQGRRTIIFVDEVHRFNKAQQDAFLPHVES-GLI 138

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLT-NPL 170
             +G      S ++N       A  +R  + T NPL
Sbjct: 139 TFIGATTENPSFEVN------AALLSRASVYTLNPL 168


>gi|167754485|ref|ZP_02426612.1| hypothetical protein ALIPUT_02781 [Alistipes putredinis DSM 17216]
 gi|167659110|gb|EDS03240.1| hypothetical protein ALIPUT_02781 [Alistipes putredinis DSM 17216]
          Length = 429

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 68/143 (47%), Gaps = 33/143 (23%)

Query: 9   SRNVSQEDADIS---LLRPRTLEEFTGQ-------------VEACSNLKVFIEAAKARAE 52
           SR   Q++  +    LL+P  ++EF  Q             V   ++ K  + A+   +E
Sbjct: 63  SRRKEQKNTSLKFEDLLKPNEIKEFLDQYVIGQDDAKRYMSVAVYNHYKRLLHASGEASE 122

Query: 53  A-LD--HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLT---- 101
             LD  ++L VGP G GKT +A+ +A+ L V F      V+ +AG    D+ ++L+    
Sbjct: 123 VELDKSNILLVGPTGTGKTLMARTIAKLLNVPFTIVDATVLTEAGYVGEDVESILSRLLQ 182

Query: 102 ------NLEDRDVLFIDEIHRLS 118
                  L  R ++FIDEI +++
Sbjct: 183 VASYDVELAQRGIVFIDEIDKIA 205


>gi|307110563|gb|EFN58799.1| hypothetical protein CHLNCDRAFT_140589 [Chlorella variabilis]
          Length = 841

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 8/71 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 543 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCV 602

Query: 109 LFIDEIHRLSI 119
           LF DE+  +++
Sbjct: 603 LFFDELDSIAV 613



 Score = 37.7 bits (86), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 252 ILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 311

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 312 IFIDEIDSIA 321


>gi|242042265|ref|XP_002468527.1| hypothetical protein SORBIDRAFT_01g047410 [Sorghum bicolor]
 gi|241922381|gb|EER95525.1| hypothetical protein SORBIDRAFT_01g047410 [Sorghum bicolor]
          Length = 780

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 8/71 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 496 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARQSAPCV 555

Query: 109 LFIDEIHRLSI 119
           LF DE+  +++
Sbjct: 556 LFFDELDSIAM 566



 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALL------TNLEDRDV 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L             +
Sbjct: 223 ILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFQEAEKNAPSI 282

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 283 IFIDEIDSIA 292


>gi|294877664|ref|XP_002768065.1| Chaperone clpB, putative [Perkinsus marinus ATCC 50983]
 gi|239870262|gb|EER00783.1| Chaperone clpB, putative [Perkinsus marinus ATCC 50983]
          Length = 955

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 71/163 (43%), Gaps = 33/163 (20%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           V  VGPPG+GKT+L + +A  LG  F R + G V  +A              G +   L 
Sbjct: 466 VCLVGPPGVGKTSLCRSIAEALGKRFCRVSLGGVRDEAEIRGHRRTYIGAMLGTVLQELA 525

Query: 102 NLEDRD-VLFIDEIHRLS---------IIVEEILYPAMEDFQLDLMVGEGPSARSVKINL 151
               R+ V+ +DEI +++           + E+L P+      D  +G       V  +L
Sbjct: 526 RCGSRECVMLLDEIDKVAQPGFNSNAQAALLELLDPSQHATFRDHYLG-------VPFDL 578

Query: 152 SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           S  T I      G ++ PL DR  + + L  Y +E+ + I +R
Sbjct: 579 SCVTFICTANSAGEMSRPLIDRLEM-VELESYTLEEKREIAKR 620


>gi|221107127|ref|XP_002168308.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 768

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +LF GPPG GKT LA+ +A E  +NF S  GP
Sbjct: 526 LLFYGPPGCGKTLLAKAIATEFTINFYSVKGP 557


>gi|254466814|ref|ZP_05080225.1| ATP-dependent Clp protease ATP-binding subunit ClpA
           [Rhodobacterales bacterium Y4I]
 gi|206687722|gb|EDZ48204.1| ATP-dependent Clp protease ATP-binding subunit ClpA
           [Rhodobacterales bacterium Y4I]
          Length = 774

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 23/161 (14%)

Query: 10  RNVSQEDADISLLRPRTLEEFT-GQVEACSNLKVFIEAAKAR----AEALDHVLFVGPPG 64
           +NVS++DA++     ++L+    GQ +A + L   I+ A+A      + + + LF GP G
Sbjct: 450 KNVSKDDAEVLKDLEKSLKRVVFGQDDAITALSSAIKLARAGLREPEKPIGNYLFAGPTG 509

Query: 65  LGKTTLAQVVARELGVNF---------------RSTSGPVIAKAGDLAALLTNLEDRD-- 107
           +GKT +A+ +A +LGV                 R    P      D   LLT+  D+   
Sbjct: 510 VGKTEVAKQLADQLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGVDQHPH 569

Query: 108 -VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSV 147
            VL +DEI +    V  IL   M++ QL    G   + R+V
Sbjct: 570 CVLLLDEIEKAHPDVYNILLQVMDNGQLTDHNGRTVNFRNV 610


>gi|195492546|ref|XP_002094038.1| GE21612 [Drosophila yakuba]
 gi|194180139|gb|EDW93750.1| GE21612 [Drosophila yakuba]
          Length = 931

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ +A E G+NF S  GP
Sbjct: 687 VLLCGPPGCGKTLLAKAIANEAGINFISVKGP 718


>gi|329766718|ref|ZP_08258261.1| AAA family ATPase, CDC48 subfamily protein [Candidatus
           Nitrosoarchaeum limnia SFB1]
 gi|329136973|gb|EGG41266.1| AAA family ATPase, CDC48 subfamily protein [Candidatus
           Nitrosoarchaeum limnia SFB1]
          Length = 728

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 44/81 (54%), Gaps = 8/81 (9%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL--EDRD 107
           EA   VL  GPPG GKT LA+ VA E   +F S SGP I     G+  A L  +  E R+
Sbjct: 209 EAPKGVLLYGPPGTGKTLLAKAVANESQAHFISISGPEIMSKFYGESEARLREIFKEARE 268

Query: 108 ----VLFIDEIHRLSIIVEEI 124
               ++F+DEI  ++   EE+
Sbjct: 269 KAPSIIFVDEIDSIAPKREEV 289


>gi|261402851|ref|YP_003247075.1| Replication factor C [Methanocaldococcus vulcanius M7]
 gi|261369844|gb|ACX72593.1| Replication factor C [Methanocaldococcus vulcanius M7]
          Length = 544

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 49/97 (50%), Gaps = 19/97 (19%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK--TTLAQVVA----R 76
           RP+TL++  GQ E    LK ++E      +++ H+LF GPPG+GK  T   +V+     R
Sbjct: 10  RPKTLDDIVGQDEIVKRLKKYVEK-----KSMPHLLFSGPPGVGKCLTGDTKVIVNGKIR 64

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDE 113
           E+G      S       G   A LTN  +  VL IDE
Sbjct: 65  EIGDVVEKISN------GKFGATLTN--NLKVLGIDE 93


>gi|225848065|ref|YP_002728228.1| ATP-dependent protease La [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643281|gb|ACN98331.1| ATP-dependent protease La [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 793

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 108/251 (43%), Gaps = 53/251 (21%)

Query: 8   LSRNVSQEDA-DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L++ +  ED  D+  ++ R LE         + LK+  +  K ++     + FVGPPG+G
Sbjct: 318 LAKKILDEDHYDLEKIKERILE-------YLAVLKLKKQKTKDQSIKGPILCFVGPPGVG 370

Query: 67  KTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLTNLEDRD-VLF 110
           KT+L + +A+ LG  F R + G V  +A              G +   +     ++ V+ 
Sbjct: 371 KTSLGKSIAKALGRKFIRISLGGVRDEAEIRGHRRTYVGALPGKIIQAIKQAGTKNPVIM 430

Query: 111 IDEIHRLSI--------IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTR 162
           +DE+ ++ +         + E+L P      +D  +G       V  +LS    I    R
Sbjct: 431 LDEVDKIGLDFRGDPTAALLEVLDPEQNREFVDHYLG-------VPFDLSEVMFICTANR 483

Query: 163 VGLLTNPLQDRFGIPIRLNFYEIED-----LKTIVQRGAKLTGLAVTDEAACEIAMRS-- 215
           +  ++ PL DR  + IRL+ Y  E+      K ++ +  K  GL   DE   E   ++  
Sbjct: 484 IDTISRPLLDRMEV-IRLSGYSEEEKLMIAKKYLIPKQLKENGL---DEKTVEFTDKAIQ 539

Query: 216 ---RGTPRIAG 223
              RG  R AG
Sbjct: 540 FIIRGYTREAG 550


>gi|169343695|ref|ZP_02864694.1| ATPase, AAA family [Clostridium perfringens C str. JGS1495]
 gi|169298255|gb|EDS80345.1| ATPase, AAA family [Clostridium perfringens C str. JGS1495]
          Length = 418

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 70/145 (48%), Gaps = 14/145 (9%)

Query: 21  LLRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           ++RP+ LE+  GQ   V   + L   I     + + + + +F GPPG+GKTTLA +++  
Sbjct: 10  IMRPKKLEDIVGQKHIVGEGTPLNKLI-----KNKNIMNCIFYGPPGVGKTTLANIISNY 64

Query: 78  LGVNFRSTSGPV--IAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQ 133
               F   +     I +   + + + NL +    +L+IDE+   +   ++ L   +ED +
Sbjct: 65  TDKKFYKINATTSSIKEIQSITSDIDNLLNFKGIILYIDELQHFNKKQQQALLEFIEDGR 124

Query: 134 LDLMVG--EGPSARSVKINLSRFTL 156
           + L+    E P     K  LSR T+
Sbjct: 125 VILIASTTENPYFAIHKAILSRSTI 149


>gi|147918695|ref|YP_687582.1| replication factor C small subunit [uncultured methanogenic
          archaeon RC-I]
 gi|121687726|sp|Q0W037|RFCS_UNCMA RecName: Full=Replication factor C small subunit; Short=RFC small
          subunit; AltName: Full=Clamp loader small subunit
 gi|110622978|emb|CAJ38256.1| replication factor C (clamp loader), small subunit [uncultured
          methanogenic archaeon RC-I]
          Length = 322

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RPR LE+  G  +    L  ++++       L H+LF GPPG+GKT  A  +AREL
Sbjct: 12 RPRRLEDVIGHQQITRRLISYVKSGN-----LPHLLFSGPPGVGKTACAVALAREL 62


>gi|61657895|ref|NP_082053.1| peroxisome biogenesis factor 1 [Mus musculus]
 gi|60551059|gb|AAH90845.1| Peroxisomal biogenesis factor 1 [Mus musculus]
          Length = 1244

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 21/32 (65%), Positives = 23/32 (71%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT LA VVARE G+NF S  GP
Sbjct: 838 ILLYGPPGTGKTLLAGVVARESGMNFISIKGP 869


>gi|14325757|dbj|BAB60660.1| replication factor C subunit [Thermoplasma volcanium GSS1]
          Length = 330

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 95/230 (41%), Gaps = 37/230 (16%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL---- 78
           RP++L E  G+ E    LK F+E  +     L H+LF G  G GKT+ A  +A EL    
Sbjct: 22  RPKSLSEIYGEDENIQKLKSFVEKKE-----LPHLLFAGSVGTGKTSTAIALAIELFGES 76

Query: 79  ------GVNFRSTSG--PVIAKAGDLAALL-TNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
                  +N  + +G   +  K  D+A +  +N     +LF+DE  +L+   +  L   M
Sbjct: 77  WKENFIEMNASNENGIDVIRNKIKDIARIRPSNPLGFKILFLDEADQLTAEAQAALRRTM 136

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           E +                   +RF    A      +  P+Q R  + +R    + E +K
Sbjct: 137 EMYS----------------ETTRFVF--ACNYSSKIIPPIQSR-TVVMRFRPVQDEFIK 177

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
             +   AK  G  + DE+   +   S G  R A  +L+ V    E++  K
Sbjct: 178 KKLNEIAKNEGFTIDDESMEAMVEVSGGDMRKAINVLQAVYTSGEISPKK 227


>gi|171677199|ref|XP_001903551.1| hypothetical protein [Podospora anserina S mat+]
 gi|170936667|emb|CAP61326.1| unnamed protein product [Podospora anserina S mat+]
          Length = 570

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 72/152 (47%), Gaps = 18/152 (11%)

Query: 22  LRPRTLEEFTGQVEACSN--LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +RP +L++  GQ     N  L+  IE  +     +  ++  G  G GKTT+A+ +AR +G
Sbjct: 155 MRPDSLDDVFGQDLVGPNGVLRSLIETDR-----VPSMILWGGSGTGKTTIARCIARRVG 209

Query: 80  -----VNFRSTSGPVIAKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMEDFQ 133
                +N  ST    + K    AA   NL  R  ++F DEIHR S   +++    +E   
Sbjct: 210 SRFIELNATSTGVAEVKKFFAEAANELNLTGRKTIIFCDEIHRFSKSQQDVFLKPVEAGT 269

Query: 134 LDLM--VGEGPSARSVKINLSR---FTLIAAT 160
           + L+    E PS +     LSR   FTL + T
Sbjct: 270 ITLIGATTENPSFKVQAALLSRCRTFTLASLT 301


>gi|281365776|ref|NP_001163371.1| smallminded, isoform C [Drosophila melanogaster]
 gi|1770214|emb|CAA67594.1| smallminded [Drosophila melanogaster]
 gi|272455082|gb|ACZ94642.1| smallminded, isoform C [Drosophila melanogaster]
          Length = 943

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ +A E G+NF S  GP
Sbjct: 698 VLLCGPPGCGKTLLAKAIANEAGINFISVKGP 729


>gi|296108938|ref|YP_003615887.1| AAA ATPase central domain protein [Methanocaldococcus infernus
          ME]
 gi|295433752|gb|ADG12923.1| AAA ATPase central domain protein [Methanocaldococcus infernus
          ME]
          Length = 483

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 3/64 (4%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEA-AKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
          I   RPR+L++  G  +    LK +IE+  K + E    +L  GPPG+GKTTLA  +A +
Sbjct: 5  IEKYRPRSLKDVVGHEKVKERLKRWIESFIKGKKEK--PILLYGPPGVGKTTLAYALAND 62

Query: 78 LGVN 81
           G +
Sbjct: 63 YGFD 66


>gi|237844815|ref|XP_002371705.1| cell division protein 48, putative [Toxoplasma gondii ME49]
 gi|211969369|gb|EEB04565.1| cell division protein 48, putative [Toxoplasma gondii ME49]
          Length = 963

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ VA E   NF S  GP +     G+  A + +L D+       V
Sbjct: 684 VLFFGPPGCGKTLLAKAVANECKANFISVKGPELLTMWFGESEANVRDLFDKARAAAPCV 743

Query: 109 LFIDEIHRLS 118
           +F DE+  ++
Sbjct: 744 IFFDEMDSIA 753



 Score = 39.7 bits (91), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDRD------V 108
           VL  G  G GKT LA+ +A E G NF + +GP V++K AG+  A L  + +        +
Sbjct: 411 VLLHGSSGCGKTLLAKAIANECGANFLTVNGPEVMSKLAGESEANLRRIFEEAAALSPCL 470

Query: 109 LFIDEIHRLS 118
           LFIDEI  ++
Sbjct: 471 LFIDEIDSIA 480


>gi|166366513|ref|YP_001658786.1| cell division protein [Microcystis aeruginosa NIES-843]
 gi|166088886|dbj|BAG03594.1| cell division protein [Microcystis aeruginosa NIES-843]
          Length = 614

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 54/109 (49%), Gaps = 16/109 (14%)

Query: 26  TLEEFTGQVEACSNLKVFIEA--------AKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +L++  G  E    LK  I          AK   E    VL VGPPG GKT  A+ +A E
Sbjct: 92  SLKDVGGLTEVIKELKELIAIPLKRPDLLAKLGLEPTRGVLLVGPPGTGKTLTARALAEE 151

Query: 78  LGVNFRSTSGP-VIAK-AGDLAALLTNLEDRD------VLFIDEIHRLS 118
           LGVN+ +  GP VI+K  G+    L  + ++       ++FIDEI  ++
Sbjct: 152 LGVNYIALVGPEVISKYYGEAEQKLRGIFEKASKNAPCIVFIDEIDSMA 200



 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 40/87 (45%), Gaps = 24/87 (27%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP----------------VIA 91
           + +A+A   +L  GPPG GKT LA+ VA +   NF S +GP                + A
Sbjct: 388 QTKAQAPKGILLWGPPGTGKTLLAKAVASQARANFISINGPELLSKWVGASEQAVRELFA 447

Query: 92  KAGDLAALLTNLEDRDVLFIDEIHRLS 118
           KA   A          V+FIDEI  L+
Sbjct: 448 KARQAAPC--------VVFIDEIDTLA 466


>gi|118095804|ref|XP_413821.2| PREDICTED: similar to Spermatogenesis associated 5-like 1 isoform 2
           [Gallus gallus]
          Length = 753

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 38/75 (50%), Gaps = 11/75 (14%)

Query: 55  DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLAALL---------TNL 103
           + VL VGPPG+GKT L + VARE G      SGP +  ++ G+    L          + 
Sbjct: 225 NGVLLVGPPGVGKTLLVKAVAREAGAYLLCISGPALYGSRPGESEENLRSVFEKGREMSC 284

Query: 104 EDRDVLFIDEIHRLS 118
           E   VLFIDEI  L 
Sbjct: 285 EGPTVLFIDEIDALC 299


>gi|13542322|ref|NP_112010.1| replication factor C small subunit [Thermoplasma volcanium GSS1]
 gi|73920753|sp|Q977Z9|RFCS_THEVO RecName: Full=Replication factor C small subunit; Short=RFC small
           subunit; AltName: Full=Clamp loader small subunit
          Length = 318

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 95/230 (41%), Gaps = 37/230 (16%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL---- 78
           RP++L E  G+ E    LK F+E  +     L H+LF G  G GKT+ A  +A EL    
Sbjct: 10  RPKSLSEIYGEDENIQKLKSFVEKKE-----LPHLLFAGSVGTGKTSTAIALAIELFGES 64

Query: 79  ------GVNFRSTSG--PVIAKAGDLAALL-TNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
                  +N  + +G   +  K  D+A +  +N     +LF+DE  +L+   +  L   M
Sbjct: 65  WKENFIEMNASNENGIDVIRNKIKDIARIRPSNPLGFKILFLDEADQLTAEAQAALRRTM 124

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           E +                   +RF    A      +  P+Q R  + +R    + E +K
Sbjct: 125 EMYS----------------ETTRFVF--ACNYSSKIIPPIQSR-TVVMRFRPVQDEFIK 165

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
             +   AK  G  + DE+   +   S G  R A  +L+ V    E++  K
Sbjct: 166 KKLNEIAKNEGFTIDDESMEAMVEVSGGDMRKAINVLQAVYTSGEISPKK 215


>gi|158706385|sp|Q5BL07|PEX1_MOUSE RecName: Full=Peroxisome biogenesis factor 1; AltName:
           Full=Peroxin-1
 gi|148682662|gb|EDL14609.1| peroxisome biogenesis factor 1 [Mus musculus]
          Length = 1284

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 21/32 (65%), Positives = 23/32 (71%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT LA VVARE G+NF S  GP
Sbjct: 878 ILLYGPPGTGKTLLAGVVARESGMNFISIKGP 909


>gi|198431165|ref|XP_002120445.1| PREDICTED: similar to peroxin1 [Ciona intestinalis]
          Length = 1270

 Score = 45.4 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 33/75 (44%), Positives = 40/75 (53%), Gaps = 8/75 (10%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDRD-- 107
           EA   VL  GPPG GKT +A VVA E  +NF S  GP V++K  G   A + +L  R   
Sbjct: 863 EANSGVLLFGPPGCGKTLIAGVVANECDLNFISIKGPEVLSKYIGASEAAVRDLFSRAKA 922

Query: 108 ----VLFIDEIHRLS 118
               VLF DE   L+
Sbjct: 923 AAPCVLFFDEFDSLA 937


>gi|170763967|ref|ZP_02636474.2| ATPase, AAA family [Clostridium perfringens B str. ATCC 3626]
 gi|170711102|gb|EDT23284.1| ATPase, AAA family [Clostridium perfringens B str. ATCC 3626]
          Length = 418

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 70/145 (48%), Gaps = 14/145 (9%)

Query: 21  LLRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           ++RP+ LE+  GQ   V   + L   I     + + + + +F GPPG+GKTTLA +++  
Sbjct: 10  IMRPKKLEDIVGQKHIVGEGTPLNKLI-----KNKNIMNCIFYGPPGVGKTTLANIISNY 64

Query: 78  LGVNFRSTSGPV--IAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQ 133
               F   +     I +   + + + NL +    +L+IDE+   +   ++ L   +ED +
Sbjct: 65  TDKKFYKINATTSSIKEIQSITSDIDNLLNFKGIILYIDELQHFNKKQQQALLEFIEDGR 124

Query: 134 LDLMVG--EGPSARSVKINLSRFTL 156
           + L+    E P     K  LSR T+
Sbjct: 125 VILIASTTENPYFAIHKAILSRSTI 149


>gi|170764155|ref|ZP_02633248.2| ATPase, AAA family [Clostridium perfringens E str. JGS1987]
 gi|170661394|gb|EDT14077.1| ATPase, AAA family [Clostridium perfringens E str. JGS1987]
          Length = 418

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 70/145 (48%), Gaps = 14/145 (9%)

Query: 21  LLRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           ++RP+ LE+  GQ   V   + L   I     + + + + +F GPPG+GKTTLA +++  
Sbjct: 10  IMRPKKLEDIVGQKHIVGEGTPLNKLI-----KNKNIINCIFYGPPGVGKTTLANIISNY 64

Query: 78  LGVNFRSTSGPV--IAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQ 133
               F   +     I +   + + + NL +    +L+IDE+   +   ++ L   +ED +
Sbjct: 65  TDKKFYKINATTSSIKEIQSITSDIDNLLNFKGIILYIDELQHFNKKQQQALLEFIEDGR 124

Query: 134 LDLMVG--EGPSARSVKINLSRFTL 156
           + L+    E P     K  LSR T+
Sbjct: 125 VILIASTTENPYFAIHKAILSRSTI 149


>gi|124485944|ref|YP_001030560.1| beta-lactamase domain-containing protein [Methanocorpusculum
           labreanum Z]
 gi|124363485|gb|ABN07293.1| AAA family ATPase, CDC48 subfamily [Methanocorpusculum labreanum Z]
          Length = 810

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 8/75 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDR------DV 108
           VL  GPPG GKT +A+ VA E G  F + SGP +I+K  GD    L  + ++       +
Sbjct: 240 VLLYGPPGTGKTLIARAVANEAGAYFDTISGPEIISKYYGDSEEKLREIFEKAEENAPSI 299

Query: 109 LFIDEIHRLSIIVEE 123
           +FIDEI  ++   EE
Sbjct: 300 IFIDEIDSIAPKREE 314



 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 19/31 (61%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           L  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 513 LMFGPPGTGKTLLAKAVANESECNFISVKGP 543


>gi|24660075|ref|NP_523959.2| smallminded, isoform A [Drosophila melanogaster]
 gi|7295244|gb|AAF50566.1| smallminded, isoform A [Drosophila melanogaster]
          Length = 944

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ +A E G+NF S  GP
Sbjct: 699 VLLCGPPGCGKTLLAKAIANEAGINFISVKGP 730


>gi|295054734|gb|ADF59564.1| MIP20544p [Drosophila melanogaster]
          Length = 910

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ +A E G+NF S  GP
Sbjct: 665 VLLCGPPGCGKTLLAKAIANEAGINFISVKGP 696


>gi|260889961|ref|ZP_05901224.1| stage V sporulation protein K [Leptotrichia hofstadii F0254]
 gi|260860567|gb|EEX75067.1| stage V sporulation protein K [Leptotrichia hofstadii F0254]
          Length = 363

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 93/216 (43%), Gaps = 46/216 (21%)

Query: 56  HVLFVGPPGLGKTTLAQVVAR---ELGVNFR------STSGPVIAKAGDLAALLTNLEDR 106
           H+ F G PG GKTT+A+++ R   +LG+  R      S +  +    G  A  + N+ ++
Sbjct: 143 HLSFTGNPGTGKTTVARIIGRIYKQLGLLSRGHFIEVSRTDLIAGYQGQTALKVKNVIEK 202

Query: 107 ---DVLFIDEIHRLS-----------IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152
               VLFIDE + ++            I E  L  A+ED++ DL+V     +  +K   S
Sbjct: 203 AKGGVLFIDEAYSITENEQSDSYGRECITE--LTKALEDYRNDLVVIVAGYSEPMKNFFS 260

Query: 153 RFTLIAATTRVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAAC-- 209
                         +NP L+ RF   I    Y  ++L  I+    K     +T++A    
Sbjct: 261 --------------SNPGLKSRFNTFIEFEDYNTKELLEILISMCKNNDYDLTEKAKVKL 306

Query: 210 ----EIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
               E  + ++      GR++R + D   + HA+ +
Sbjct: 307 NGFFETELENKKENFSNGRMVRNIYDDLVMNHARRV 342


>gi|221501587|gb|EEE27357.1| cell division protein, putative [Toxoplasma gondii VEG]
          Length = 963

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ VA E   NF S  GP +     G+  A + +L D+       V
Sbjct: 684 VLFFGPPGCGKTLLAKAVANECKANFISVKGPELLTMWFGESEANVRDLFDKARAAAPCV 743

Query: 109 LFIDEIHRLS 118
           +F DE+  ++
Sbjct: 744 IFFDEMDSIA 753



 Score = 39.7 bits (91), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDRD------V 108
           VL  G  G GKT LA+ +A E G NF + +GP V++K AG+  A L  + +        +
Sbjct: 411 VLLHGSSGCGKTLLAKAIANECGANFLTVNGPEVMSKLAGESEANLRRIFEEAAALSPCL 470

Query: 109 LFIDEIHRLS 118
           LFIDEI  ++
Sbjct: 471 LFIDEIDSIA 480


>gi|221480890|gb|EEE19311.1| cell division protein, putative [Toxoplasma gondii GT1]
          Length = 963

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ VA E   NF S  GP +     G+  A + +L D+       V
Sbjct: 684 VLFFGPPGCGKTLLAKAVANECKANFISVKGPELLTMWFGESEANVRDLFDKARAAAPCV 743

Query: 109 LFIDEIHRLS 118
           +F DE+  ++
Sbjct: 744 IFFDEMDSIA 753



 Score = 39.7 bits (91), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDRD------V 108
           VL  G  G GKT LA+ +A E G NF + +GP V++K AG+  A L  + +        +
Sbjct: 411 VLLHGSSGCGKTLLAKAIANECGANFLTVNGPEVMSKLAGESEANLRRIFEEAAALSPCL 470

Query: 109 LFIDEIHRLS 118
           LFIDEI  ++
Sbjct: 471 LFIDEIDSIA 480


>gi|159025964|emb|CAO88754.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 614

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 54/109 (49%), Gaps = 16/109 (14%)

Query: 26  TLEEFTGQVEACSNLKVFIEA--------AKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +L++  G  E    LK  I          AK   E    VL VGPPG GKT  A+ +A E
Sbjct: 92  SLKDVGGLTEVIKELKELIAIPLKRPDLLAKLGLEPTRGVLLVGPPGTGKTLTARALAEE 151

Query: 78  LGVNFRSTSGP-VIAK-AGDLAALLTNLEDRD------VLFIDEIHRLS 118
           LGVN+ +  GP VI+K  G+    L  + ++       ++FIDEI  ++
Sbjct: 152 LGVNYIALVGPEVISKYYGEAEQKLRGIFEKASKNAPCIVFIDEIDSMA 200



 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 26/41 (63%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           + +A+A   +L  GPPG GKT LA+ VA +   NF S +GP
Sbjct: 388 QTKAQAPKGILLWGPPGTGKTLLAKAVASQARANFISINGP 428


>gi|302874689|ref|YP_003843322.1| MgsA AAA+ ATPase-like [Clostridium cellulovorans 743B]
 gi|307690699|ref|ZP_07633145.1| recombination factor protein RarA [Clostridium cellulovorans 743B]
 gi|302577546|gb|ADL51558.1| MgsA AAA+ ATPase-like [Clostridium cellulovorans 743B]
          Length = 424

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 65/139 (46%), Gaps = 10/139 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ +EE  GQ       K+  +  ++  + + +++F GPPG GKTT+A ++A+     
Sbjct: 8   LRPQVIEEVVGQSHLIGQNKILTKIIES--QHIPNMIFYGPPGCGKTTVANIIAKATNKR 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLE-----DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           F   +    A   D+  ++  L+        +L++DEI   +   ++ L   +E+  + L
Sbjct: 66  FFKLNA-TNASTKDIKEIILELDTFMGAKGVLLYLDEIQNFNKKQQQSLLEFIENGSITL 124

Query: 137 MVG--EGPSARSVKINLSR 153
           +    E P        LSR
Sbjct: 125 IASTTENPYFYVYNAILSR 143


>gi|255074337|ref|XP_002500843.1| predicted protein [Micromonas sp. RCC299]
 gi|226516106|gb|ACO62101.1| predicted protein [Micromonas sp. RCC299]
          Length = 818

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNL------EDRDV 108
           VL  GPPG GKTTLA  +ARE GV F S + P  V   +G+  A +  L          +
Sbjct: 208 VLLHGPPGCGKTTLAHAIAREAGVPFFSIAAPEIVAGVSGESEAKIRQLFAAAAAAAPSI 267

Query: 109 LFIDEI 114
           +FIDE+
Sbjct: 268 VFIDEV 273



 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 17/32 (53%), Positives = 19/32 (59%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT +A+  A E   NF S  GP
Sbjct: 514 VLLYGPPGCGKTLVAKATANEANANFISIKGP 545


>gi|225568848|ref|ZP_03777873.1| hypothetical protein CLOHYLEM_04927 [Clostridium hylemonae DSM
           15053]
 gi|225162347|gb|EEG74966.1| hypothetical protein CLOHYLEM_04927 [Clostridium hylemonae DSM
           15053]
          Length = 426

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 28/130 (21%)

Query: 17  ADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEAL---------DHVLFVGP 62
           ADI+LL+P  +++F      GQ EA   L V +     R  A           ++L +GP
Sbjct: 68  ADINLLKPEEIKDFLDEYVIGQDEAKKVLSVAVYNHYKRIMAQKDLGVELNKSNILMLGP 127

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDV------- 108
            G GKT LAQ +A+ L V F       + +AG +   + N+        D DV       
Sbjct: 128 TGCGKTLLAQTLAKILNVPFAIADATALTEAGYVGEDVENILLKIIQAADGDVERAEYGI 187

Query: 109 LFIDEIHRLS 118
           ++IDEI +++
Sbjct: 188 IYIDEIDKIT 197


>gi|145503568|ref|XP_001437759.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124404914|emb|CAK70362.1| unnamed protein product [Paramecium tetraurelia]
          Length = 691

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 23/32 (71%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +LF GPPG GKT LA+ +A E+ +NF S  GP
Sbjct: 468 ILFFGPPGTGKTLLAKCIACEMKMNFISVKGP 499


>gi|148655610|ref|YP_001275815.1| ATP-dependent protease La [Roseiflexus sp. RS-1]
 gi|148567720|gb|ABQ89865.1| ATP-dependent protease La [Roseiflexus sp. RS-1]
          Length = 823

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 71/160 (44%), Gaps = 32/160 (20%)

Query: 59  FVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLTNL 103
           FVGPPG+GKT+L Q +AR LG  F R + G V  +A              G L   L   
Sbjct: 366 FVGPPGVGKTSLGQSIARALGRQFARMSLGGVRDEAELRGFRRTYIGSQPGRLIQELRRA 425

Query: 104 EDRD-VLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRF 154
              D V+ +DEI +L        +  + E+L P   D   D  +       +V  +LS+ 
Sbjct: 426 GTSDPVILLDEIDKLGHDYRGDPAAALLEVLDPEQNDTFTDHYL-------NVPFDLSKV 478

Query: 155 TLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
             IA    +  +   L+DR  + I L+ Y +++   I QR
Sbjct: 479 LFIATANTMDTVPPALRDRMEV-IELSGYTVDEKVHIAQR 517


>gi|45552965|ref|NP_996009.1| smallminded, isoform B [Drosophila melanogaster]
 gi|45446020|gb|AAS65065.1| smallminded, isoform B [Drosophila melanogaster]
          Length = 850

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ +A E G+NF S  GP
Sbjct: 605 VLLCGPPGCGKTLLAKAIANEAGINFISVKGP 636


>gi|255761622|gb|ACU32854.1| apicoplast cell division cycle 48 protein [Toxoplasma gondii]
          Length = 1044

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ VA E   NF S  GP +     G+  A + +L D+       V
Sbjct: 765 VLFFGPPGCGKTLLAKAVANECKANFISVKGPELLTMWFGESEANVRDLFDKARAAAPCV 824

Query: 109 LFIDEIHRLS 118
           +F DE+  ++
Sbjct: 825 IFFDEMDSIA 834



 Score = 39.7 bits (91), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDRD------V 108
           VL  G  G GKT LA+ +A E G NF + +GP V++K AG+  A L  + +        +
Sbjct: 492 VLLHGSSGCGKTLLAKAIANECGANFLTVNGPEVMSKLAGESEANLRRIFEEAAALSPCL 551

Query: 109 LFIDEIHRLS 118
           LFIDEI  ++
Sbjct: 552 LFIDEIDSIA 561


>gi|288931073|ref|YP_003435133.1| ATPase AAA [Ferroglobus placidus DSM 10642]
 gi|288893321|gb|ADC64858.1| AAA ATPase central domain protein [Ferroglobus placidus DSM 10642]
          Length = 352

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 90/201 (44%), Gaps = 27/201 (13%)

Query: 27  LEEFTGQVEACSNLKVFIEAAKARAE----ALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           L++  GQ EA    ++ +E  K   +    A  +VLF GPPG GKT +A+ +A E  V F
Sbjct: 104 LDDVVGQEEAKRKARIILEYLKNPEKFGKWAPKNVLFYGPPGTGKTMMAKALANEAKVPF 163

Query: 83  RSTSGP--VIAKAGDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAMEDFQL 134
            S      +    G+ A  +  L +R       ++F+DE   ++      L  + +D + 
Sbjct: 164 LSVKSTRLIGEHVGEGARKIHELYERAKQIAPCIVFLDEFDSIA------LDRSYQDLRG 217

Query: 135 DLMVGEGPSARSVKIN-LSR---FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           D  V E  +A   +++ + R      IAAT R+  L   ++ RF   I      IE+ + 
Sbjct: 218 D--VSEIVNALLTELDGIERREGICTIAATNRIEFLDPSIRSRFEEEIEFTLPGIEERRE 275

Query: 191 IVQRGAKLTGLAVT---DEAA 208
           I +R  +   L V    DE A
Sbjct: 276 IFERNLRDFPLKVEVNLDEVA 296


>gi|255712103|ref|XP_002552334.1| KLTH0C02442p [Lachancea thermotolerans]
 gi|238933713|emb|CAR21896.1| KLTH0C02442p [Lachancea thermotolerans]
          Length = 356

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 12/71 (16%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
          RP+ LE+ T Q  A + LK  +++A      L H+LF GPPG GKT+    + +EL    
Sbjct: 31 RPKKLEDVTAQDHAVNVLKKTLQSAN-----LPHMLFYGPPGTGKTSTILALTKEL---- 81

Query: 83 RSTSGPVIAKA 93
              GP + K+
Sbjct: 82 ---YGPALMKS 89


>gi|48477528|ref|YP_023234.1| cell division cycle protein 48 [Picrophilus torridus DSM 9790]
 gi|48430176|gb|AAT43041.1| cell division cycle protein 48 [Picrophilus torridus DSM 9790]
          Length = 744

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 16/85 (18%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--V 108
           VL  GPPG GKT +A+ VA E G NF + +GP I           L  +    E+ +  +
Sbjct: 226 VLLSGPPGTGKTLIAKAVANESGANFYAINGPEIMSKYYGQSEQKLREIFQKAEESEPSI 285

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQ 133
           +FIDEI  ++        P  ED Q
Sbjct: 286 IFIDEIDSIA--------PKREDVQ 302



 Score = 39.7 bits (91), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 18/33 (54%), Positives = 20/33 (60%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           L  GPPG GKT LA+ VA E   NF S  GP +
Sbjct: 504 LLYGPPGTGKTLLAKAVANESNANFISIKGPEV 536


>gi|297809595|ref|XP_002872681.1| AAA-type ATPase family protein [Arabidopsis lyrata subsp. lyrata]
 gi|297318518|gb|EFH48940.1| AAA-type ATPase family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 602

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 88/196 (44%), Gaps = 21/196 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTS-GPVIAKA--------GDLAALLTNLEDRD 107
           VLF GPPG GKT+ A+V+A + G+         V++K         GD+ +    L D  
Sbjct: 366 VLFEGPPGTGKTSCARVIANQAGIPLLYVPLEAVMSKYYGESERLLGDVFSQANELPDGA 425

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           ++F+DEI   +I  +  ++ A     L +++ +       K    +  +IAAT R   L 
Sbjct: 426 IIFLDEIDAFAISRDSEMHEATRRV-LSVLLRQIDGFEQDK----KVVVIAATNRKQDLD 480

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             L  RF   I  +  +++  + I+ + AK         +  E+   ++ T  ++GR +R
Sbjct: 481 PALISRFDSMIMFDLPDLQTRQEIITQYAKQL-------SKPELVQLAQATEAMSGRDIR 533

Query: 228 RVRDFAEVAHAKTITR 243
            V   AE   A  + R
Sbjct: 534 DVCQGAERTWASKLIR 549


>gi|291532621|emb|CBL05734.1| ATP-dependent protease, Lon family [Megamonas hypermegale ART12/1]
          Length = 471

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 81/326 (24%), Positives = 115/326 (35%), Gaps = 63/326 (19%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           + LLRP  L E  GQ  A   LK     AK  +    H++  GPPG+GKTT A++V +E 
Sbjct: 1   MELLRPENLSEIIGQERAIKALK-----AKLSSPYPQHLILYGPPGVGKTTAARLVLQEA 55

Query: 79  GVN----------FRSTSGPVI--AKAGDLAALLTNLED-------RD------------ 107
                        F  T G  +     G    LL ++ D       RD            
Sbjct: 56  CTQPHTPFNADAPFVETDGTTLRYDPRGIANPLLGSVHDPIYQGARRDLADSGIPEPKPG 115

Query: 108 --------VLFIDEIHRLSIIVEEILYPAMED----FQLDLMVGEGPSARSVKINL---- 151
                   +LFIDEI  L   ++  L   +ED    F         P+       L    
Sbjct: 116 LVTDAHGGILFIDEIGELDDTLQNELLKVLEDKRAYFDSAYFEPNDPNVPEYIKKLFTEG 175

Query: 152 --SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAA- 208
             + F LI ATTR     NP        I       + ++TIV   A      + DE A 
Sbjct: 176 APADFVLIGATTRDSYYLNPALRSRCAEIYFEPLTPKHIETIVLNAAHKLYAKLDDEVAQ 235

Query: 209 --CEIAMRSRGTPRI-----AGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
              E  +  R    I     +  L+R+  D   +   K     +A  + L   I K   D
Sbjct: 236 IISEYTIEGRKAINILADAYSNALVRQENDMDNILITKEDIYTVAQVSRLTPFITKKASD 295

Query: 262 QLDL-RYLTMIARNFGGGPVGIETIS 286
             ++ +   +    F G  + IE I+
Sbjct: 296 TSEIGKIFGLGVAGFIGSVIEIEAIT 321


>gi|118095806|ref|XP_001232157.1| PREDICTED: similar to Spermatogenesis associated 5-like 1 isoform 1
           [Gallus gallus]
          Length = 749

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 38/75 (50%), Gaps = 11/75 (14%)

Query: 55  DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLAALL---------TNL 103
           + VL VGPPG+GKT L + VARE G      SGP +  ++ G+    L          + 
Sbjct: 225 NGVLLVGPPGVGKTLLVKAVAREAGAYLLCISGPALYGSRPGESEENLRSVFEKGREMSC 284

Query: 104 EDRDVLFIDEIHRLS 118
           E   VLFIDEI  L 
Sbjct: 285 EGPTVLFIDEIDALC 299


>gi|257092782|ref|YP_003166423.1| ATP-dependent protease La [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257045306|gb|ACV34494.1| ATP-dependent protease La [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 790

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 73/162 (45%), Gaps = 32/162 (19%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           + FVGPPG+GKT+L Q +AR LG  F R++ G    +A              G++   + 
Sbjct: 369 LCFVGPPGVGKTSLGQSIARALGRKFVRASLGGCHDEAEIRGHRRTYIGALPGNIIQAIR 428

Query: 102 NLEDRD-VLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152
               R  V+ +DEI +L        S  + E+L P   +   D  +       ++  +LS
Sbjct: 429 KAGSRGCVMMLDEIDKLGSGIQGDPSAALLEVLDPEQNNTFRDNYL-------ALPYDLS 481

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           R   I     +  +  PL+DR  I I+L  Y  E+ + I +R
Sbjct: 482 RMLFITTANVLDNIPGPLRDRMEI-IQLPGYTQEEKREIARR 522


>gi|289548377|ref|YP_003473365.1| ATP-dependent protease La [Thermocrinis albus DSM 14484]
 gi|289181994|gb|ADC89238.1| ATP-dependent protease La [Thermocrinis albus DSM 14484]
          Length = 786

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 58/260 (22%), Positives = 104/260 (40%), Gaps = 46/260 (17%)

Query: 47  AKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIA 91
            K ++ A+  + FVGPPG+GKT+L + +A  LG  F   S                 V A
Sbjct: 356 TKGKSSAVQILCFVGPPGVGKTSLGRSIAEALGRKFVRISLGGIRDEAEIRGHRRTYVGA 415

Query: 92  KAGDLAALLTNLEDRDVLFI-DEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGP 142
             G +   L     ++ L + DE+ ++S+  +        E+L P      +DL +G   
Sbjct: 416 MPGRIMQALKQAGTKNPLIVLDEVDKISVSFQGDPAAALLEVLDPEQNKQFVDLYIG--- 472

Query: 143 SARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLA 202
               +  +LS    I    R   +  PL DR  + I L+ Y  E+ K  + +   +  L 
Sbjct: 473 ----LPFDLSEVFFICTANRADTIPRPLLDRMEV-INLSGYS-EEEKVFIAKNHLIPRL- 525

Query: 203 VTDEAACEIAMRSRGTPRIAGR---LLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259
                   + M   G   +  +   L+  +R +   +  + + R+I+   L +LA+ ++ 
Sbjct: 526 --------LPMHGFGKDEVVFKDDALMEIIRGYTRESGVRNLQRQIS-TVLRKLALRRLK 576

Query: 260 FDQLDLRYLTMIARNFGGGP 279
            +           +NF G P
Sbjct: 577 GENPPFEVTLQDVKNFLGVP 596


>gi|226228183|ref|YP_002762289.1| ATP-dependent Lon protease [Gemmatimonas aurantiaca T-27]
 gi|226091374|dbj|BAH39819.1| ATP-dependent Lon protease [Gemmatimonas aurantiaca T-27]
          Length = 847

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 86/202 (42%), Gaps = 47/202 (23%)

Query: 47  AKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNF-----------------RSTSGP 88
           AK+RA A   +L F GPPG+GKT++A+ +AR LG  +                 R T   
Sbjct: 386 AKSRAMARGPILLFNGPPGVGKTSIAKSIARSLGREYVRVALGGARDEADIRGHRRTY-- 443

Query: 89  VIAKAGDLAALLTNLEDRDVLF-IDEIHRL--------SIIVEEILYPAMEDFQLDLMVG 139
           V A  G +   +     R+ +F +DE+ +L        S  + E+L PA  D   D  +G
Sbjct: 444 VGAMPGRIIQGMKQAGSRNPVFLLDEVDKLGQSYQGDPSSALLEVLDPAQNDSFTDHYLG 503

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV------- 192
                  V  +LS    IA +  +  +  PL DR  + +  + Y   + K I        
Sbjct: 504 -------VPFDLSEVLFIATSNFIQNIPGPLLDRMEV-VDFSGYTEREKKEIALSYLIPR 555

Query: 193 ---QRGAKLTGLAVTDEAACEI 211
              + G    GL+ TD+A  ++
Sbjct: 556 QLEESGLAGRGLSFTDDAVMKV 577


>gi|145243766|ref|XP_001394395.1| werner helicase interacting protein [Aspergillus niger CBS 513.88]
 gi|134079076|emb|CAK48385.1| unnamed protein product [Aspergillus niger]
          Length = 513

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 65/130 (50%), Gaps = 13/130 (10%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPR  ++  GQ   +     L+  IE      + L +++  GPPG GKTT+A+++   +
Sbjct: 110 VRPRCFDDIVGQKSLIGPNGTLRRLIEQ-----DELPNLILWGPPGSGKTTIARIIGPMM 164

Query: 79  --GVNFRSTSGPVIAKAGDLAALLTNL-EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
              V   S+   +  +  D+    T+   ++ ++F DEIHRL+   ++I   AM   ++ 
Sbjct: 165 RRKVYEISSLTTITTEYRDIVTKATHDGRNKSIIFCDEIHRLTRPQQDIFLDAMRRNKIT 224

Query: 136 LM--VGEGPS 143
           L+    E PS
Sbjct: 225 LIGATTENPS 234


>gi|167465551|ref|ZP_02330640.1| AAA ATPase, central domain protein [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 559

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 5/62 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP +LE+  GQ E    LK  +     +     HVL  GPPG+GKT  A+VV  E   N 
Sbjct: 51  RPSSLEDIVGQKEGLKALKAALCGPNPQ-----HVLIYGPPGVGKTAAARVVLEEAKKNI 105

Query: 83  RS 84
           +S
Sbjct: 106 KS 107


>gi|124027197|ref|YP_001012517.1| ATPases of AAA+ class, SpoVK, putative cell division [Hyperthermus
           butylicus DSM 5456]
 gi|123977891|gb|ABM80172.1| ATPases of AAA+ class, SpoVK, putative cell division [Hyperthermus
           butylicus DSM 5456]
          Length = 737

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 17/118 (14%)

Query: 24  PRTLEEFTGQVE-ACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVV 74
           PR   E  G +E A   ++  +E      E  +H        +L  GPPG+GKT LA+ +
Sbjct: 186 PRVTWEDIGDLEEAKEKIREIVELPMKHPELFEHLGIEPPKGILLYGPPGVGKTLLAKAL 245

Query: 75  ARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DVLFIDEIHRLSIIVEEI 124
           A E+G  F + +GP I     G+    L  + +        ++FIDEI  ++   EE+
Sbjct: 246 ANEIGAYFIAINGPEIMSKYYGESEQRLREIFEEAEKNAPSIIFIDEIDAIAPRREEV 303



 Score = 39.7 bits (91), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT LA+  A E G NF +  GP I
Sbjct: 502 ILLFGPPGTGKTLLAKAAATESGANFIAVRGPEI 535


>gi|6760428|gb|AAF28347.1| calmodulin-binding protein [Arabidopsis thaliana]
 gi|6760430|gb|AAF28348.1| calmodulin-binding protein [Arabidopsis thaliana]
          Length = 1022

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 21/34 (61%), Positives = 24/34 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL  GPPG GKT+LA+  AR  GVNF S +GP I
Sbjct: 421 VLIHGPPGTGKTSLARTFARHSGVNFFSVNGPEI 454



 Score = 37.7 bits (86), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 16/111 (14%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDHV--------LFVGPPGLGKTTLAQVVARE 77
             E+  GQ E  + L   +E  +   +A   +        L  GPPG  KT +A+ VA E
Sbjct: 722 NWEDVGGQNEVKNQLMEAVEWPQKHQDAFKRIGTRPPSGILMFGPPGCSKTLMARAVASE 781

Query: 78  LGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DVLFIDEIHRLSII 120
             +NF +  GP +     G+    + +L  +       ++F DEI  L+ I
Sbjct: 782 AKLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDSLASI 832


>gi|332025898|gb|EGI66054.1| ATPase WRNIP1 [Acromyrmex echinatior]
          Length = 552

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 71/149 (47%), Gaps = 15/149 (10%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA------ 75
           +RP +L  F GQ        +  E  + + E  + +L+ GPPG GKT+LA V+A      
Sbjct: 109 MRPTSLLNFVGQRHILGPRTILSELLQ-KGEIPNMILW-GPPGCGKTSLANVIAHMCKND 166

Query: 76  --RELGVNFRSTSGPVIAKAGDLAALLTN---LEDRDVLFIDEIHRLSIIVEEILYPAME 130
             R+L     S +   + +  ++ ++ +N        ++F+DEIHR + + +++  P +E
Sbjct: 167 ASRKLRYVKLSAAMAGVQEVKEVISIASNHAKYAQHTIVFMDEIHRFNKMQQDVFLPHVE 226

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLI 157
              + L+    E PS       LSR  +I
Sbjct: 227 SGIITLIGATTENPSFSLNSALLSRCRVI 255


>gi|303231330|ref|ZP_07318065.1| DNA polymerase III, subunit gamma and tau [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302514010|gb|EFL56017.1| DNA polymerase III, subunit gamma and tau [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 763

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 119/292 (40%), Gaps = 39/292 (13%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T  +  GQ +    L   I     R + + H  LF GP G GKT++A++ AR +   
Sbjct: 11  RPQTFTDVVGQHQVSDTLMRAI-----REDKVAHAYLFAGPRGTGKTSMAKIFARAINCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDE-----IHRLSIIVEEILYPAMED----F 132
              T  P       +   + + +  DVL ID      I  +  + E + +  +E     F
Sbjct: 66  HGPTDHP--CNECSVCKSILSGQSMDVLEIDAASNRGIDEIRALRESVKFMPVEGRKKVF 123

Query: 133 QLD---LMVGEGPSA--RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI-- 185
            +D   ++  E  +A  ++++        I ATT +  L   +  R     R  F  I  
Sbjct: 124 IIDEAHMLTNEAWNALLKTIEEPPDHVMFIFATTEIEKLPVTIVSRCQ---RYTFRRITS 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           +D+   +Q  A   G A+ D AA  IA+ + G  R A  +L +    A        + EI
Sbjct: 181 DDIAQRLQYVADKEGFALEDNAARLIAVHADGGLRDALSILDQCVGMA--------SGEI 232

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
             A +  L    +G    D     + A + G GP  ++ I   LSE RD  +
Sbjct: 233 TPAVVEEL----IGLVSKDWIIKFLSALHNGDGPAVLKYIQNALSEGRDGAQ 280


>gi|253681305|ref|ZP_04862103.1| cell division protease FtsH [Clostridium botulinum D str. 1873]
 gi|253562543|gb|EES91994.1| cell division protease FtsH [Clostridium botulinum D str. 1873]
          Length = 657

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 37/69 (53%), Gaps = 7/69 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH-------VLFVGPPGLGKTTLAQVVAREL 78
           T +E  G  E  + L+  ++  KA  + LD        +L VGPPG GKT LA+ VA E 
Sbjct: 160 TFKEVAGADEEKAELEEIVDFLKAPNKYLDMGARIPKGILLVGPPGTGKTLLAKAVAGEA 219

Query: 79  GVNFRSTSG 87
           GV F S SG
Sbjct: 220 GVPFFSISG 228


>gi|218512936|ref|ZP_03509776.1| recombination factor protein RarA [Rhizobium etli 8C-3]
          Length = 93

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 38/68 (55%), Gaps = 8/68 (11%)

Query: 22 LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          LRP+TL E TGQ         LK  IE+      +L  ++F GPPG GKTT+A++++ E 
Sbjct: 24 LRPKTLAEVTGQEHLTGEDGVLKRMIESG-----SLGSMIFWGPPGTGKTTVARLLSGEA 78

Query: 79 GVNFRSTS 86
          G    S S
Sbjct: 79 GAGPSSIS 86


>gi|198457521|ref|XP_001360696.2| GA15351 [Drosophila pseudoobscura pseudoobscura]
 gi|198136008|gb|EAL25271.2| GA15351 [Drosophila pseudoobscura pseudoobscura]
          Length = 801

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 511 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARSAAPCV 570

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 571 LFFDELDSIA 580



 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 238 ILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAI 297

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 298 IFIDEIDAIA 307


>gi|195162967|ref|XP_002022325.1| GL26363 [Drosophila persimilis]
 gi|194104286|gb|EDW26329.1| GL26363 [Drosophila persimilis]
          Length = 909

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ +A E G+NF S  GP
Sbjct: 664 VLLCGPPGCGKTLLAKAIANEAGINFISVKGP 695


>gi|193617621|ref|XP_001949588.1| PREDICTED: transitional endoplasmic reticulum ATPase TER94-like
           [Acyrthosiphon pisum]
          Length = 804

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 512 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARAAAPCV 571

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 572 LFFDELDSIA 581



 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ D     +
Sbjct: 239 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADRNSPAI 298

Query: 109 LFIDEIHRLS 118
           +FIDE+  ++
Sbjct: 299 IFIDELDAIA 308


>gi|15228991|ref|NP_191228.1| CIP111 (CAM INTERACTING PROTEIN 111); ATPase/ calmodulin binding
           [Arabidopsis thaliana]
 gi|9662988|emb|CAC00732.1| calmodulin-binding protein [Arabidopsis thaliana]
 gi|332646031|gb|AEE79552.1| Cam interacting protein 111 [Arabidopsis thaliana]
          Length = 1022

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 21/34 (61%), Positives = 24/34 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL  GPPG GKT+LA+  AR  GVNF S +GP I
Sbjct: 421 VLIHGPPGTGKTSLARTFARHSGVNFFSVNGPEI 454



 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 16/111 (14%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDHV--------LFVGPPGLGKTTLAQVVARE 77
             E+  GQ E  + L   +E  +   +A   +        L  GPPG  KT +A+ VA E
Sbjct: 722 NWEDVGGQNEVKNQLMEAVEWPQKHQDAFKRIGTRPPSGILMFGPPGCSKTLMARAVASE 781

Query: 78  LGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DVLFIDEIHRLSII 120
             +NF +  GP +     G+    + +L  +       ++F DEI  L+ I
Sbjct: 782 AKLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDSLASI 832


>gi|85110657|ref|XP_963567.1| hypothetical protein NCU08706 [Neurospora crassa OR74A]
 gi|9453819|emb|CAB99387.1| conserved hypothetical protein [Neurospora crassa]
 gi|28925252|gb|EAA34331.1| hypothetical protein NCU08706 [Neurospora crassa OR74A]
          Length = 622

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 70/148 (47%), Gaps = 18/148 (12%)

Query: 22  LRPRTLEEFTGQVEACSN--LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +RP +L++  GQ     N  L+  IE  +     +  ++  G  G GKTT+A+ +A+  G
Sbjct: 184 MRPGSLDDVFGQDLVGPNGVLRALIETDR-----VPSMILWGGSGTGKTTIARCIAQRTG 238

Query: 80  VNF----RSTSGPVIAKA--GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             F     ++SG    K   G+ A  L     R ++F DEIHR +   ++I    +E   
Sbjct: 239 SRFIELNATSSGVAECKKYFGEAANELHLTGRRTIIFCDEIHRFTKAQQDIFLKPVEAGT 298

Query: 134 LDLM--VGEGPSARSVKINLSR---FTL 156
           + L+    E PS + V   LSR   FTL
Sbjct: 299 ITLIGATTENPSFKVVPALLSRCRTFTL 326


>gi|328767253|gb|EGF77303.1| hypothetical protein BATDEDRAFT_91654 [Batrachochytrium
          dendrobatidis JAM81]
          Length = 326

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 6/60 (10%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81
          RP+TL E +GQ E  + L   I+      + L H+L  GPPG GKT++   +AR+L G N
Sbjct: 15 RPKTLSEISGQNEVVAVLSNTIQT-----QNLPHLLLYGPPGTGKTSIILALARQLYGAN 69


>gi|312377117|gb|EFR24029.1| hypothetical protein AND_11685 [Anopheles darlingi]
          Length = 834

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 511 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARSASPCV 570

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 571 LFFDELDSIA 580



 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 238 ILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAI 297

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 298 IFIDEI 303


>gi|262272122|gb|ACY40036.1| AT24528p [Drosophila melanogaster]
          Length = 829

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 539 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARSAAPCV 598

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 599 LFFDELDSIA 608



 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 266 ILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAI 325

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 326 IFIDEI 331


>gi|194757830|ref|XP_001961165.1| GF11135 [Drosophila ananassae]
 gi|190622463|gb|EDV37987.1| GF11135 [Drosophila ananassae]
          Length = 801

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 511 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARSAAPCV 570

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 571 LFFDELDSIA 580



 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 238 ILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAI 297

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 298 IFIDEIDAIA 307


>gi|194858161|ref|XP_001969115.1| TER94 [Drosophila erecta]
 gi|27374245|gb|AAO01004.1| CG2331-PA [Drosophila erecta]
 gi|190660982|gb|EDV58174.1| TER94 [Drosophila erecta]
          Length = 801

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 511 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARSAAPCV 570

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 571 LFFDELDSIA 580



 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 238 ILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAI 297

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 298 IFIDEI 303


>gi|296394109|ref|YP_003658993.1| ATPase AAA [Segniliparus rotundus DSM 44985]
 gi|296181256|gb|ADG98162.1| AAA ATPase central domain protein [Segniliparus rotundus DSM 44985]
          Length = 479

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 67/147 (45%), Gaps = 25/147 (17%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPR + E  GQ   +     L+  ++        +  V+  GPPG GKTT+A +++   
Sbjct: 45  MRPRDVAEVLGQDHLLGPGRPLRRLVDG-----HGVASVVLHGPPGTGKTTIASLLSAAT 99

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED---------RDVLFIDEIHRLSIIVEEILYPAM 129
           G  F + S    A    +  +   +ED         R VLFIDE+HR S   ++ L  A+
Sbjct: 100 GREFVALS----ALTAGVKEVREVIEDSRMRLAAGRRTVLFIDEVHRFSKTQQDALLAAV 155

Query: 130 EDFQLDLMVG---EGPSARSVKINLSR 153
           E  Q+ L+V    E P    V   LSR
Sbjct: 156 E-HQIVLLVAATTENPGFAVVSPLLSR 181


>gi|290559904|gb|EFD93226.1| replication factor C small subunit [Candidatus Parvarchaeum
           acidophilus ARMAN-5]
          Length = 313

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 53/231 (22%), Positives = 93/231 (40%), Gaps = 36/231 (15%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL---- 78
           RP++ +E  GQ +    LK     A +  + + H++  GPPG+GKTT A V+A+E+    
Sbjct: 9   RPQSFDEVIGQKDIVEKLK-----AMSSKKEIQHMILSGPPGVGKTTCAVVLAKEVFGST 63

Query: 79  -GVNFRSTSGP-------VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
              NF   +         +  K  + A          ++  DE   L+   ++ L   ME
Sbjct: 64  WNQNFIELNASDDRKLSVIQGKVKEFARTKPIDSPFKIILFDEADSLTQEAQQALRRMME 123

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           ++                 +  RF L +   +  ++  PLQ R  I +R       D+  
Sbjct: 124 EYS----------------STCRF-LFSVNYQSNII-EPLQSRCAI-LRFQPLSKTDVTK 164

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
            + R A+   L +  EA   +   SRG  R    L++ + + +    AK +
Sbjct: 165 FIDRIAEKEKLEIDSEAKDALEYVSRGDLRNLVNLMQSLANVSNKIDAKAV 215


>gi|255076393|ref|XP_002501871.1| lon protease [Micromonas sp. RCC299]
 gi|226517135|gb|ACO63129.1| lon protease [Micromonas sp. RCC299]
          Length = 904

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 85/193 (44%), Gaps = 34/193 (17%)

Query: 9   SRNVSQEDADISLLRPRTL--EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGL 65
           S+  + +  +++++  R +  EE  G  +    +  ++   + R EA   +L F GPPG+
Sbjct: 361 SKEAAADAHEVAMVEARAVLDEEHYGLDKVKDRIVEYLAVRRLRPEARPPILCFTGPPGV 420

Query: 66  GKTTLAQVVARELGVNFRSTS-GPVIAKA--------------GDLAALLTNLEDRD-VL 109
           GKTTLA+ +AR L   F+  S G V  +A              G L A L     +D VL
Sbjct: 421 GKTTLARSIARVLSRPFQRISLGGVRDEADIRGHRRTYIASMPGRLIAGLRRCGVKDPVL 480

Query: 110 FIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATT 161
            +DE+ ++        +  + E+L P       D  +G       V  +LSR T +A   
Sbjct: 481 LLDELDKMGADSRGDPAAAMLEVLDPEQNHAFTDHYLG-------VPFDLSRVTFLATAN 533

Query: 162 RVGLLTNPLQDRF 174
               +  PL+DR 
Sbjct: 534 DPRTIPGPLRDRM 546


>gi|328874863|gb|EGG23228.1| replication factor C subunit [Dictyostelium fasciculatum]
          Length = 368

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 10/86 (11%)

Query: 2  MDREGLLSRNVSQEDAD----ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
          MD E L  +   Q   D    +   RP++L+E     +    +   I+       +L H+
Sbjct: 3  MDEEYLRKQTKEQRIHDSLPWVEKYRPKSLKELISHEDIIDTITKLIDK-----NSLPHL 57

Query: 58 LFVGPPGLGKTTLAQVVAREL-GVNF 82
          LF GPPG GKT+  Q VAR+L G N+
Sbjct: 58 LFYGPPGTGKTSTIQAVARKLYGDNY 83


>gi|321471444|gb|EFX82417.1| hypothetical protein DAPPUDRAFT_316737 [Daphnia pulex]
          Length = 759

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ +A E G+NF S  GP
Sbjct: 519 VLLCGPPGCGKTLLAKAIANEAGINFISVKGP 550


>gi|288574502|ref|ZP_06392859.1| AAA ATPase central domain protein [Dethiosulfovibrio peptidovorans
           DSM 11002]
 gi|288570243|gb|EFC91800.1| AAA ATPase central domain protein [Dethiosulfovibrio peptidovorans
           DSM 11002]
          Length = 423

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 23/168 (13%)

Query: 22  LRPRTLEEFTGQVEA---CSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL----AQVV 74
           +RP +L+++ G ++      +L+V +E        +   +  GPPG+GKT L    A V 
Sbjct: 12  MRPSSLDQYIGHLDVMGPTGSLRVLLEKG-----VVPSCILYGPPGVGKTALVRLMASVT 66

Query: 75  AREL-GVNFRSTSGPVIAKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMEDF 132
            REL  +N  S     +    + AA    L  R  V F+DEI+  +   +  L P++E  
Sbjct: 67  DRELFEINAVSAKVSQLRDLIEKAARFKALSGRSAVAFVDEIYHFNKGQQNALLPSVEKG 126

Query: 133 QLDLMVG---EGPSARSVKINLSR---FTL--IAATTRVGLLTNPLQD 172
            + ++VG   E P     K  LSR   F+L  +     VG++ N L D
Sbjct: 127 DV-VLVGTTTENPWFEINKTLLSRLLVFSLKPLEKDDLVGIMNNALSD 173


>gi|224127332|ref|XP_002329251.1| predicted protein [Populus trichocarpa]
 gi|222870705|gb|EEF07836.1| predicted protein [Populus trichocarpa]
          Length = 776

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 8/71 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 498 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARQSAPCV 557

Query: 109 LFIDEIHRLSI 119
           +F DE+  ++I
Sbjct: 558 IFFDELDSIAI 568



 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ +A E G  F   +GP I    AG+    L    E+ +     +
Sbjct: 225 ILLYGPPGTGKTLIARAIANETGAFFFCINGPEIMSKMAGESEQNLRKAFEEAEKNAPAI 284

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 285 VFIDEIDSIA 294


>gi|332372578|gb|AEE61431.1| unknown [Dendroctonus ponderosae]
          Length = 424

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 127 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARSAAPCV 186

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 187 LFFDELDSIA 196


>gi|198464466|ref|XP_001353233.2| GA21172 [Drosophila pseudoobscura pseudoobscura]
 gi|198149730|gb|EAL30736.2| GA21172 [Drosophila pseudoobscura pseudoobscura]
          Length = 933

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ +A E G+NF S  GP
Sbjct: 688 VLLCGPPGCGKTLLAKAIANEAGINFISVKGP 719


>gi|188996065|ref|YP_001930316.1| ATP-dependent protease La [Sulfurihydrogenibium sp. YO3AOP1]
 gi|302425073|sp|B2V6N0|LON_SULSY RecName: Full=Lon protease; AltName: Full=ATP-dependent protease La
 gi|188931132|gb|ACD65762.1| ATP-dependent protease La [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 800

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 98/224 (43%), Gaps = 45/224 (20%)

Query: 34  VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAK 92
           +E  + LK+  E++K ++     + FVGPPG+GKT+L + +A+ L   F R + G V  +
Sbjct: 343 LEYLAVLKLKKESSKDKSIKGPILCFVGPPGVGKTSLGRSIAKALNRKFVRISLGGVRDE 402

Query: 93  A--------------GDLAALLTNLEDRD-VLFIDEIHRLSI--------IVEEILYPAM 129
           A              G +   +     ++ V+ +DE+ ++ +         + E+L P  
Sbjct: 403 AEIRGHRRTYVGAMPGKIIQAIKQARTKNPVIMLDEVDKIGLDFRGDPTAALLEVLDPEQ 462

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED-- 187
               +D  +G       V  +LS    I    R+  +  PL DR  + IRL+ Y  E+  
Sbjct: 463 NKEFIDHYLG-------VPFDLSEVMFICTANRLDTIPRPLLDRMEV-IRLSGYSEEEKL 514

Query: 188 ---LKTIVQRGAKLTGLAVTDEAACEIAMRS-----RGTPRIAG 223
               K ++ +  K  GL   DE   E + ++     RG  R AG
Sbjct: 515 HIAKKYLIPKQLKENGL---DEKTVEFSDKAITFLIRGYTREAG 555


>gi|216264904|ref|ZP_03436896.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi
           156a]
 gi|215981377|gb|EEC22184.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi
           156a]
          Length = 560

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 96/228 (42%), Gaps = 25/228 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPR      GQ      LK  IE  K  A A    +F GP G+GKT+ A+  AR L    
Sbjct: 12  RPRDFNSLEGQDFVVETLKHSIEKNKI-ANAY---IFSGPRGVGKTSSARAFARCLNC-- 65

Query: 83  RSTSGPVIAKAGDLAAL--LTNLEDRDVLFIDEIHRLSI-----IVEEILY-PAMEDF-- 132
              +GP +   G+ +    + N    DV+ ID     S+     I EEI++ PA+  +  
Sbjct: 66  --RNGPTVMPCGECSNCKSIENDSSLDVVEIDGASNTSVQDIRQIKEEIMFPPAISKYRI 123

Query: 133 ----QLDLMVGEGPSA--RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
               ++ ++     +A  ++++   +    I ATT    L   ++ R           ++
Sbjct: 124 YIIDEVHMLSNSAFNALLKTIEEPPNYIVFIFATTESHKLPETIKSRCQ-HFSFKLLSLD 182

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
            +  ++++      +   DEA   IA +S G+ R A  L  ++  F +
Sbjct: 183 KIYNMLKKVCLEDDIKYEDEALKWIAYKSSGSVRDAYTLFDQIVSFTD 230


>gi|126459037|ref|YP_001055315.1| ATPase [Pyrobaculum calidifontis JCM 11548]
 gi|126248758|gb|ABO07849.1| ATPase associated with various cellular activities, AAA_3
           [Pyrobaculum calidifontis JCM 11548]
          Length = 302

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 12/94 (12%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAA--LLTNLEDR---- 106
           A  HVLF  PPGLGKTTLA+++A+ LG++F+           D+    +    E R    
Sbjct: 28  AQGHVLFTDPPGLGKTTLAKLLAKSLGLSFKRIQFTPDMLPSDVVGVNVWRPHEGRFEFV 87

Query: 107 ------DVLFIDEIHRLSIIVEEILYPAMEDFQL 134
                 +VL  DEI+R     +  L  AME+ Q+
Sbjct: 88  KGPVFTNVLLADEINRAPPKTQAALLEAMEERQV 121


>gi|18312811|ref|NP_559478.1| TBP-interacting protein TIP49 [Pyrobaculum aerophilum str. IM2]
 gi|18160296|gb|AAL63660.1| TBP-interacting protein TIP49 [Pyrobaculum aerophilum str. IM2]
          Length = 450

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 35/65 (53%), Gaps = 5/65 (7%)

Query: 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPV 89
          F GQVEA     + ++  K    A   VL VGPPG GKT LA  +ARELG     +  P 
Sbjct: 38 FVGQVEAREAAYIVVKMIKEGKFAGKGVLIVGPPGTGKTALALGIARELG-----SETPF 92

Query: 90 IAKAG 94
          +A +G
Sbjct: 93 VALSG 97


>gi|226504612|ref|NP_001142062.1| hypothetical protein LOC100274218 [Zea mays]
 gi|194706964|gb|ACF87566.1| unknown [Zea mays]
          Length = 359

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 70  VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCV 129

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 130 LFFDELDSIA 139


>gi|224532486|ref|ZP_03673111.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi
           WI91-23]
 gi|225548674|ref|ZP_03769721.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi
           94a]
 gi|226321094|ref|ZP_03796636.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi
           29805]
 gi|224512558|gb|EEF82934.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi
           WI91-23]
 gi|225370704|gb|EEH00140.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi
           94a]
 gi|226233504|gb|EEH32243.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi
           29805]
          Length = 560

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 96/228 (42%), Gaps = 25/228 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPR      GQ      LK  IE  K  A A    +F GP G+GKT+ A+  AR L    
Sbjct: 12  RPRDFNSLEGQDFVVETLKHSIEKNKI-ANAY---IFSGPRGVGKTSSARAFARCLNC-- 65

Query: 83  RSTSGPVIAKAGDLAAL--LTNLEDRDVLFIDEIHRLSI-----IVEEILY-PAMEDF-- 132
              +GP +   G+ +    + N    DV+ ID     S+     I EEI++ PA+  +  
Sbjct: 66  --RNGPTVMPCGECSNCKSIENDSSLDVVEIDGASNTSVQDIRQIKEEIMFPPAISKYRI 123

Query: 133 ----QLDLMVGEGPSA--RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
               ++ ++     +A  ++++   +    I ATT    L   ++ R           ++
Sbjct: 124 YIIDEVHMLSNSAFNALLKTIEEPPNYIVFIFATTESHKLPETIKSRCQ-HFSFKLLSLD 182

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
            +  ++++      +   DEA   IA +S G+ R A  L  ++  F +
Sbjct: 183 KIYNMLKKVCLEDDIKYEDEALKWIAYKSSGSVRDAYTLFDQIVSFTD 230


>gi|3337433|gb|AAC27447.1| transitional endoplasmic reticulum ATPase TER94 [Drosophila
           melanogaster]
          Length = 801

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 511 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARSAAPCV 570

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 571 LFFDELDSIA 580



 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 238 ILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAI 297

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 298 IFIDEIDAIA 307


>gi|295397215|ref|ZP_06807315.1| cell division protein FtsH [Aerococcus viridans ATCC 11563]
 gi|294974538|gb|EFG50265.1| cell division protein FtsH [Aerococcus viridans ATCC 11563]
          Length = 646

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 50/105 (47%), Gaps = 15/105 (14%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVARE 77
           R  ++  GQ EA  +L   ++  K         A+A   VL VGPPG GKT +A+ VA E
Sbjct: 205 RNFKDVAGQDEAKESLVEVVDYLKEPKKYQEIGAQAPRGVLLVGPPGTGKTLMAKAVAGE 264

Query: 78  LGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--VLFIDEI 114
            GV F S +G    +      A  +  L     D+   ++FIDEI
Sbjct: 265 AGVPFFSIAGSEFVEMFVGRGAAKVRDLFKQANDKAPCIVFIDEI 309


>gi|195379959|ref|XP_002048738.1| GJ21209 [Drosophila virilis]
 gi|194143535|gb|EDW59931.1| GJ21209 [Drosophila virilis]
          Length = 801

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 511 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARSAAPCV 570

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 571 LFFDELDSIA 580



 Score = 37.7 bits (86), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 238 ILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAI 297

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 298 IFIDEIDAIA 307


>gi|322383230|ref|ZP_08057041.1| LonB ATP-dependent protease-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321152499|gb|EFX45285.1| LonB ATP-dependent protease-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 565

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 5/62 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP +LE+  GQ E    LK  +     +     HVL  GPPG+GKT  A+VV  E   N 
Sbjct: 57  RPSSLEDIVGQKEGLKALKAALCGPNPQ-----HVLIYGPPGVGKTAAARVVLEEAKKNI 111

Query: 83  RS 84
           +S
Sbjct: 112 KS 113


>gi|195942043|ref|ZP_03087425.1| DNA polymerase III subunits gamma and tau [Borrelia burgdorferi
           80a]
          Length = 560

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 96/228 (42%), Gaps = 25/228 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPR      GQ      LK  IE  K  A A    +F GP G+GKT+ A+  AR L    
Sbjct: 12  RPRDFNSLEGQDFVVETLKHSIEKNKI-ANAY---IFSGPRGVGKTSSARAFARCLNC-- 65

Query: 83  RSTSGPVIAKAGDLAAL--LTNLEDRDVLFIDEIHRLSI-----IVEEILY-PAMEDF-- 132
              +GP +   G+ +    + N    DV+ ID     S+     I EEI++ PA+  +  
Sbjct: 66  --RNGPTVMPCGECSNCKSIENDSSLDVVEIDGASNTSVQDIRQIKEEIMFPPAISKYRI 123

Query: 133 ----QLDLMVGEGPSA--RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
               ++ ++     +A  ++++   +    I ATT    L   ++ R           ++
Sbjct: 124 YIIDEVHMLSNSAFNALLKTIEEPPNYIVFIFATTESHKLPETIKSRCQ-HFSFKLLSLD 182

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
            +  ++++      +   DEA   IA +S G+ R A  L  ++  F +
Sbjct: 183 KIYNMLKKVCLEDDIKYEDEALKWIAYKSSGSVRDAYTLFDQIVSFTD 230


>gi|195430960|ref|XP_002063516.1| GK21952 [Drosophila willistoni]
 gi|194159601|gb|EDW74502.1| GK21952 [Drosophila willistoni]
          Length = 801

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 511 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARSAAPCV 570

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 571 LFFDELDSIA 580



 Score = 37.7 bits (86), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 238 ILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAI 297

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 298 IFIDEIDAIA 307


>gi|195332987|ref|XP_002033173.1| GM21173 [Drosophila sechellia]
 gi|195582062|ref|XP_002080847.1| GD10706 [Drosophila simulans]
 gi|194125143|gb|EDW47186.1| GM21173 [Drosophila sechellia]
 gi|194192856|gb|EDX06432.1| GD10706 [Drosophila simulans]
          Length = 801

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 511 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARSAAPCV 570

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 571 LFFDELDSIA 580



 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 238 ILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAI 297

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 298 IFIDEIDAIA 307


>gi|168050884|ref|XP_001777887.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162670752|gb|EDQ57315.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 550

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 63/137 (45%), Gaps = 31/137 (22%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGD----------LAALLTNLE 104
           +L  GPPG GKT++   VARE   +F S SG  + K  AG+           AAL   + 
Sbjct: 47  LLLYGPPGTGKTSVVHAVARECNAHFTSLSGASVHKAFAGESEKVLREAFSKAALEAAIG 106

Query: 105 DRDVLFIDEIHRLSIIVEEILYPAMEDFQ----------LDLMVGEGPSARSVKINLSRF 154
              ++FIDEI        + + P  +  +          L LM G G S+++     SR 
Sbjct: 107 RPAIIFIDEI--------DTMCPPRDSRRQQETRLVAQLLTLMDGIG-SSKAGLAGTSRV 157

Query: 155 TLIAATTRVGLLTNPLQ 171
            ++AAT RV  + + L+
Sbjct: 158 VVVAATNRVNSIDSALR 174


>gi|161076486|ref|NP_001097249.1| TER94, isoform C [Drosophila melanogaster]
 gi|157400263|gb|ABV53745.1| TER94, isoform C [Drosophila melanogaster]
          Length = 826

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 536 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARSAAPCV 595

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 596 LFFDELDSIA 605



 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 263 ILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAI 322

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 323 IFIDEI 328


>gi|260654418|ref|ZP_05859908.1| replication-associated recombination protein A [Jonquetella
           anthropi E3_33 E1]
 gi|260631051|gb|EEX49245.1| replication-associated recombination protein A [Jonquetella
           anthropi E3_33 E1]
          Length = 426

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 70/145 (48%), Gaps = 18/145 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPR+L+E+ G    +   + L+ F+E        +   +  GPPG+GKT L +++ R  
Sbjct: 12  MRPRSLDEYRGHSSILAPGAPLRRFLEEGD-----VPSCILYGPPGVGKTALVRLMGRVT 66

Query: 79  G-----VNFRSTSGPVIAKAGDLAALLTNLEDRDVL-FIDEIHRLSIIVEEILYPAMEDF 132
           G     +N  S     +    D AA L  L  R  + F+DE++  +   ++ L P++E  
Sbjct: 67  GRELLEINAVSAKVSELRDLVDRAADLRRLSGRSAIAFVDELYHFNRSQQDALLPSVERG 126

Query: 133 QLDLMVG---EGPSARSVKINLSRF 154
           ++ ++VG   E P     K  LSR 
Sbjct: 127 EV-ILVGTTTENPRFEINKTLLSRL 150


>gi|195475210|ref|XP_002089877.1| GE19324 [Drosophila yakuba]
 gi|194175978|gb|EDW89589.1| GE19324 [Drosophila yakuba]
          Length = 801

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 511 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARSAAPCV 570

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 571 LFFDELDSIA 580



 Score = 37.7 bits (86), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 238 ILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAI 297

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 298 IFIDEIDAIA 307


>gi|195028018|ref|XP_001986879.1| GH20288 [Drosophila grimshawi]
 gi|193902879|gb|EDW01746.1| GH20288 [Drosophila grimshawi]
          Length = 802

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 512 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARSAAPCV 571

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 572 LFFDELDSIA 581



 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 239 ILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAI 298

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 299 IFIDEIDAIA 308


>gi|150400153|ref|YP_001323920.1| replication factor C small subunit [Methanococcus vannielii SB]
 gi|166225157|sp|A6US36|RFCS_METVS RecName: Full=Replication factor C small subunit; Short=RFC small
          subunit; AltName: Full=Clamp loader small subunit
 gi|150012856|gb|ABR55308.1| Replication factor C [Methanococcus vannielii SB]
          Length = 315

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 5/59 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
          RP  L+E  G  E    LK ++E      +++ H+LF G PG+GKTT A  +A++L  N
Sbjct: 10 RPENLDEVVGHQEIIKRLKNYVEK-----KSMPHLLFSGSPGVGKTTAALCLAKDLYGN 63


>gi|108803068|ref|YP_643005.1| vesicle-fusing ATPase [Rubrobacter xylanophilus DSM 9941]
 gi|108764311|gb|ABG03193.1| Vesicle-fusing ATPase [Rubrobacter xylanophilus DSM 9941]
          Length = 513

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 21/34 (61%), Positives = 25/34 (73%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +LF GPPG GKT LA+ VARE G +F + SGP I
Sbjct: 290 ILFHGPPGTGKTLLARAVARESGAHFIAVSGPEI 323


>gi|17137560|ref|NP_477369.1| TER94, isoform A [Drosophila melanogaster]
 gi|122087253|sp|Q7KN62|TERA_DROME RecName: Full=Transitional endoplasmic reticulum ATPase TER94;
           AltName: Full=Valosin-containing protein homolog
 gi|4689330|gb|AAD27852.1|AF132553_1 BcDNA.GM02885 [Drosophila melanogaster]
 gi|7303816|gb|AAF58863.1| TER94, isoform A [Drosophila melanogaster]
 gi|220942716|gb|ACL83901.1| TER94-PA [synthetic construct]
          Length = 801

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 511 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARSAAPCV 570

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 571 LFFDELDSIA 580



 Score = 37.7 bits (86), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 238 ILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAI 297

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 298 IFIDEIDAIA 307


>gi|71419636|ref|XP_811227.1| peroxisome assembly protein [Trypanosoma cruzi strain CL Brener]
 gi|70875867|gb|EAN89376.1| peroxisome assembly protein, putative [Trypanosoma cruzi]
          Length = 955

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 29/48 (60%), Gaps = 4/48 (8%)

Query: 41  KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           ++F    K RA     +LF GPPG GKT LA+ VA E+ +NF +  GP
Sbjct: 686 ELFSTGTKRRA----GILFYGPPGCGKTLLAKAVATEMNMNFMAVKGP 729


>gi|158294507|ref|XP_315644.3| AGAP005630-PA [Anopheles gambiae str. PEST]
 gi|157015594|gb|EAA44058.3| AGAP005630-PA [Anopheles gambiae str. PEST]
          Length = 804

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 511 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARSASPCV 570

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 571 LFFDELDSIA 580



 Score = 37.7 bits (86), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 238 ILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAI 297

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 298 IFIDEIDAIA 307


>gi|329961967|ref|ZP_08299978.1| putative ATP-dependent Clp protease ATP-binding subunit ClpA
           [Bacteroides fluxus YIT 12057]
 gi|328530615|gb|EGF57473.1| putative ATP-dependent Clp protease ATP-binding subunit ClpA
           [Bacteroides fluxus YIT 12057]
          Length = 739

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 4/71 (5%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKA----RAEALDHVLFVGPPGLGKTT 69
           ++ A +  L PR   +  GQ EA   +   ++ +KA      + L  +LFVGP G+GKT 
Sbjct: 439 EDTASLETLHPRISAKIYGQDEAVRQVVEAVQMSKAGLMDENKPLASLLFVGPTGVGKTE 498

Query: 70  LAQVVARELGV 80
           +A+V+A ELG+
Sbjct: 499 VAKVLATELGI 509


>gi|218249810|ref|YP_002374972.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi
           ZS7]
 gi|223888742|ref|ZP_03623333.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi
           64b]
 gi|218164998|gb|ACK75059.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi
           ZS7]
 gi|223885558|gb|EEF56657.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi
           64b]
          Length = 560

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 96/228 (42%), Gaps = 25/228 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPR      GQ      LK  IE  K  A A    +F GP G+GKT+ A+  AR L    
Sbjct: 12  RPRDFNSLEGQDFVVETLKHSIEKNKI-ANAY---IFSGPRGVGKTSSARAFARCLNC-- 65

Query: 83  RSTSGPVIAKAGDLAAL--LTNLEDRDVLFIDEIHRLSI-----IVEEILY-PAMEDF-- 132
              +GP +   G+ +    + N    DV+ ID     S+     I EEI++ PA+  +  
Sbjct: 66  --RNGPTVMPCGECSNCKSIENDSSLDVVEIDGASNTSVQDIRQIKEEIMFPPAISKYRI 123

Query: 133 ----QLDLMVGEGPSA--RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
               ++ ++     +A  ++++   +    I ATT    L   ++ R           ++
Sbjct: 124 YIIDEVHMLSNSAFNALLKTIEEPPNYIVFIFATTESHKLPETIKSRCQ-HFSFKLLSLD 182

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
            +  ++++      +   DEA   IA +S G+ R A  L  ++  F +
Sbjct: 183 KIYNMLKKVCLEDDIKYEDEALKWIAYKSSGSVRDAYTLFDQIVSFTD 230


>gi|162312526|ref|NP_594449.2| DNA replication ATPase [Schizosaccharomyces pombe 972h-]
 gi|74626620|sp|O13984|WRIP1_SCHPO RecName: Full=ATPase WRNIP1 homolog C26H5.02c
 gi|62867681|emb|CAB16188.2| DNA replication ATPase [Schizosaccharomyces pombe]
          Length = 504

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 61/134 (45%), Gaps = 16/134 (11%)

Query: 23  RPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           RP++L+E+ GQ E       ++  IE  +  +     ++  G  G GKTTLA+++A    
Sbjct: 91  RPKSLDEYVGQEELVGERGIIRNLIEQDRCNS-----MILWGSAGTGKTTLARLIAVTTK 145

Query: 80  VNFRSTSGPVIAKAG------DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             F   S      A       D    LT    + ++F+DE+HR +   ++I  P +E   
Sbjct: 146 SRFIEISATSTTVADCRKIFEDSQNYLTLTGRKTIIFLDEVHRFNRAQQDIFLPMVEKGL 205

Query: 134 LDLM--VGEGPSAR 145
           + L+    E PS R
Sbjct: 206 VTLIGATTENPSFR 219


>gi|294892451|ref|XP_002774070.1| Katanin p60 ATPase-containing subunit, putative [Perkinsus marinus
           ATCC 50983]
 gi|239879274|gb|EER05886.1| Katanin p60 ATPase-containing subunit, putative [Perkinsus marinus
           ATCC 50983]
          Length = 438

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 37/75 (49%), Gaps = 8/75 (10%)

Query: 51  AEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL----- 103
           +E+   VL  GPPG+GKT LA+ VA E G  F + S   +     GD   L+  L     
Sbjct: 191 SESWRGVLLFGPPGVGKTMLAKAVATECGTTFFNVSASTVVSKWRGDSEKLIRCLFELAL 250

Query: 104 -EDRDVLFIDEIHRL 117
            +    +FIDEI  L
Sbjct: 251 AQQPSTIFIDEIDSL 265


>gi|195120371|ref|XP_002004702.1| GI19458 [Drosophila mojavensis]
 gi|193909770|gb|EDW08637.1| GI19458 [Drosophila mojavensis]
          Length = 801

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 511 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARSAAPCV 570

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 571 LFFDELDSIA 580



 Score = 37.7 bits (86), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 238 ILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAI 297

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 298 IFIDEIDAIA 307


>gi|119482299|ref|XP_001261178.1| cell division control protein Cdc48 [Neosartorya fischeri NRRL 181]
 gi|119409332|gb|EAW19281.1| cell division control protein Cdc48 [Neosartorya fischeri NRRL 181]
          Length = 819

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ VA E   NF S  GP
Sbjct: 533 VLFYGPPGTGKTMLAKAVANECAANFISVKGP 564



 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 259 ILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 318

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 319 IFIDEIDSIA 328


>gi|332529293|ref|ZP_08405255.1| ATP-dependent protease ATP-binding subunit ClpX [Hylemonella
           gracilis ATCC 19624]
 gi|332041210|gb|EGI77574.1| ATP-dependent protease ATP-binding subunit ClpX [Hylemonella
           gracilis ATCC 19624]
          Length = 421

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD--------LAALLTNLE 104
           A  ++L +GP G GKT LAQ +AR+L V F       + +AG         +A LL N  
Sbjct: 114 AKSNILLIGPTGSGKTLLAQTLARQLNVPFVMADATTLTEAGYVGEDVENIIAKLLQNCN 173

Query: 105 ------DRDVLFIDEIHRLS 118
                  R +++IDEI ++S
Sbjct: 174 YEVEKAQRGIVYIDEIDKIS 193


>gi|326563109|gb|EGE13382.1| recombination factor protein RarA [Moraxella catarrhalis 12P80B1]
          Length = 412

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 64/138 (46%), Gaps = 9/138 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP TL+   GQ    S           R   L  ++  G  G+GKTTLA ++A  +G  
Sbjct: 8   MRPTTLDAVIGQTHLLSEGAPIFNIV--RQGFLPSLILHGSAGIGKTTLAMLLADAVGRP 65

Query: 82  FRSTSGPVIAKAGDLAALLTN----LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           FR  S  V +   +L  +L +      +  V+F+DEIHR +   ++ L  A+E  ++ L+
Sbjct: 66  FRPLSA-VSSGVKELREVLRSDDGLFHEPPVVFVDEIHRFNKAQQDALLQAVETGEITLI 124

Query: 138 --VGEGPSARSVKINLSR 153
               E PS       LSR
Sbjct: 125 GATTENPSFSVNNALLSR 142


>gi|254565419|ref|XP_002489820.1| ATP-dependent Lon protease involved in degradation of misfolded
           proteins in mitochondria [Pichia pastoris GS115]
 gi|238029616|emb|CAY67539.1| ATP-dependent Lon protease involved in degradation of misfolded
           proteins in mitochondria [Pichia pastoris GS115]
 gi|328350236|emb|CCA36636.1| hypothetical protein PP7435_Chr1-0484 [Pichia pastoris CBS 7435]
          Length = 1066

 Score = 45.1 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 50/188 (26%), Positives = 78/188 (41%), Gaps = 42/188 (22%)

Query: 38  SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTS----------- 86
           SN K   E  KARA  L   L  GPPG+GKT+L + +A+ L   F+  S           
Sbjct: 520 SNPKQEDEEIKARAPIL---LLTGPPGVGKTSLGKSIAKALNKKFQRVSLGGLKDESEIK 576

Query: 87  GPVIAKAGDLAALLTNLEDRD-----VLFIDEIHRL---------------SIIVEEILY 126
           G      G +  LLT    +      V+ +DEI ++               +  + E+L 
Sbjct: 577 GHRRTYVGAMPGLLTQALRKSQSFDPVILLDEIDKVVDGSQGPGSRVNGDPAAALLEVLD 636

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           P       D  +G         ++LSR   I  +  + +++ PL+DR  + I LN Y   
Sbjct: 637 PEQNSNFSDHYIG-------FPLDLSRVVFICTSNDMSMISAPLRDRMEV-IELNGYNYF 688

Query: 187 DLKTIVQR 194
           +   IV++
Sbjct: 689 EKVEIVKQ 696


>gi|161076488|ref|NP_001097250.1| TER94, isoform D [Drosophila melanogaster]
 gi|157400264|gb|ABV53746.1| TER94, isoform D [Drosophila melanogaster]
          Length = 759

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 469 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARSAAPCV 528

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 529 LFFDELDSIA 538



 Score = 37.7 bits (86), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 196 ILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAI 255

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 256 IFIDEIDAIA 265


>gi|112983322|ref|NP_001037003.1| transitional endoplasmic reticulum ATPase TER94 [Bombyx mori]
 gi|83423461|dbj|BAE54254.1| transitional endoplasmic reticulum ATPase TER94 [Bombyx mori]
 gi|95102992|gb|ABF51437.1| transitional endoplasmic reticulum ATPase TER94 [Bombyx mori]
          Length = 805

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 512 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARSASPCV 571

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 572 LFFDELDSIA 581



 Score = 38.5 bits (88), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ D     +
Sbjct: 239 ILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAI 298

Query: 109 LFIDEI 114
           +FIDE+
Sbjct: 299 IFIDEL 304


>gi|71002728|ref|XP_756045.1| cell division control protein Cdc48 [Aspergillus fumigatus Af293]
 gi|28394450|gb|AAM08677.1| Cdc48p [Aspergillus fumigatus]
 gi|66853683|gb|EAL94007.1| cell division control protein Cdc48 [Aspergillus fumigatus Af293]
 gi|159130099|gb|EDP55213.1| cell division control protein Cdc48 [Aspergillus fumigatus A1163]
          Length = 819

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ VA E   NF S  GP
Sbjct: 533 VLFYGPPGTGKTMLAKAVANECAANFISVKGP 564



 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 259 ILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 318

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 319 IFIDEIDSIA 328


>gi|225028672|ref|ZP_03717864.1| hypothetical protein EUBHAL_02951 [Eubacterium hallii DSM 3353]
 gi|224953982|gb|EEG35191.1| hypothetical protein EUBHAL_02951 [Eubacterium hallii DSM 3353]
          Length = 432

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 65/136 (47%), Gaps = 28/136 (20%)

Query: 11  NVSQEDADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEA---------LDH 56
           N +++  +I+L++P+ ++ F      GQ EA   L V +     R  A           +
Sbjct: 53  NFNEDTQEINLMKPKEMKAFLDDYVIGQDEAKKVLSVAVYNHYKRILAGGSYDVELQKSN 112

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---EDRD-- 107
           ++ +GP G GKT LAQ +AR+L V F       + +AG    D+  +L  L    D D  
Sbjct: 113 IIMLGPTGSGKTLLAQTLARQLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDIE 172

Query: 108 -----VLFIDEIHRLS 118
                +++IDEI +++
Sbjct: 173 RAQTGIIYIDEIDKIT 188


>gi|213962623|ref|ZP_03390884.1| DNA polymerase III, subunits gamma and tau [Capnocytophaga
           sputigena Capno]
 gi|213954618|gb|EEB65939.1| DNA polymerase III, subunits gamma and tau [Capnocytophaga
           sputigena Capno]
          Length = 363

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 98/237 (41%), Gaps = 32/237 (13%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP++  +  GQ    + L   IE     A+AL   LF GP G+GKTT A+++A+++    
Sbjct: 12  RPQSFHDVVGQQAITNTLLNAIENNHL-AQAL---LFTGPRGVGKTTCARILAKKIN--- 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL--------------SIIVEEILYPA 128
             T+G  +    D A  +  L+      +D+I +L                I++E+   +
Sbjct: 65  EQTAG--VEDENDFAFNIFELDAASNNSVDDIRKLIEQVRIPPQVGKYKVYIIDEVHMLS 122

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
              F   L   E P   ++         I ATT    +   +  R  I        I D+
Sbjct: 123 PSAFNAFLKTLEEPPKHAI--------FILATTEKHKIIPTILSRCQI-FDFKRITINDI 173

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           +  ++  A+  G+A  DEA   IA ++ G  R A  +  RV  F+     +  T EI
Sbjct: 174 REYLKYIAQQQGIAAEDEALQIIAQKADGAMRDALSIFDRVVSFSGEKITRQATSEI 230


>gi|194389988|dbj|BAG60510.1| unnamed protein product [Homo sapiens]
          Length = 765

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E G+NF S  GP
Sbjct: 527 VLLAGPPGCGKTLLAKAVANESGLNFISVKGP 558


>gi|24652279|ref|NP_724866.1| TER94, isoform B [Drosophila melanogaster]
 gi|7303817|gb|AAF58864.1| TER94, isoform B [Drosophila melanogaster]
 gi|25012330|gb|AAN71276.1| LP12034p [Drosophila melanogaster]
 gi|220950626|gb|ACL87856.1| TER94-PB [synthetic construct]
          Length = 297

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 7   VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARSAAPCV 66

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 67  LFFDELDSIA 76


>gi|326573491|gb|EGE23457.1| recombination factor protein RarA [Moraxella catarrhalis O35E]
          Length = 412

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 64/138 (46%), Gaps = 9/138 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP TL+   GQ    S           R   L  ++  G  G+GKTTLA ++A  +G  
Sbjct: 8   MRPTTLDAVIGQTHLLSEGAPIFNIV--RQGFLPSLILHGSAGIGKTTLAMLLADAVGRP 65

Query: 82  FRSTSGPVIAKAGDLAALLTN----LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           FR  S  V +   +L  +L +      +  V+F+DEIHR +   ++ L  A+E  ++ L+
Sbjct: 66  FRPLSA-VSSGVKELREVLRSDDGLFHEPPVVFVDEIHRFNKAQQDALLQAVETGEITLI 124

Query: 138 --VGEGPSARSVKINLSR 153
               E PS       LSR
Sbjct: 125 GATTENPSFSVNNALLSR 142


>gi|312897409|ref|ZP_07756833.1| DNA polymerase III, subunit gamma and tau [Megasphaera
           micronuciformis F0359]
 gi|310621470|gb|EFQ05006.1| DNA polymerase III, subunit gamma and tau [Megasphaera
           micronuciformis F0359]
          Length = 627

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 46/97 (47%), Gaps = 6/97 (6%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T E+  GQ      L+  +E  K  A A    LF GP G GKT+ A++ A+ L    
Sbjct: 11  RPKTFEDVVGQGRIMKTLQQAVENDKV-AHAY---LFSGPRGTGKTSTAKIFAKALNCVH 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
             TS P      D+   +T+ E  DV+ ID     SI
Sbjct: 67  GPTSHP--CNECDVCKHITSGESLDVVEIDAASNRSI 101


>gi|255969567|gb|ACU45413.1| ATP-dependent Zn protease [Peanut witches'-broom phytoplasma]
          Length = 685

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 74/264 (28%), Positives = 114/264 (43%), Gaps = 51/264 (19%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDRD------V 108
           VL  GPPG GKT LA+ VA E GV F +TSG   V    G  A+ + NL  +       +
Sbjct: 229 VLLSGPPGTGKTLLAKAVAGEAGVAFFATSGSEFVEKYVGVGASRIRNLFQKAAQYSPCI 288

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMV----GEGPSARSVKINLS------------ 152
           +FIDE+  L+     I + +  D  L+ ++    G G +   + I  +            
Sbjct: 289 IFIDEVEGLAHKRGAISHNSEHDNTLNQLLVELDGFGSNTEIIVIAATNQPEMLDSALLR 348

Query: 153 ------RFT--LIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVT 204
                 RFT  L +A  R  +L    +++   P  +N  EI + +TI   GA+L G  V 
Sbjct: 349 PGRFDRRFTINLPSARDRKAILELHAKNKHFSP-NVNLSEIAE-QTIGFSGAQLEG--VL 404

Query: 205 DEAACEIAMRSRG---TPRIAGRLLRRV-------RDFAEVAHAKTITREIADAALLRLA 254
           +E+A  +A R R     P+     + R+       +DF      K +    A   +L + 
Sbjct: 405 NESAL-LAARRRSLYIEPQDVNEAIDRILIGSTVKKDFLSKKEKKLVAYHEAGHGVLAVV 463

Query: 255 IDKMGFDQLDLRYLTMIARNFGGG 278
           +D    D   +R +T+I R   GG
Sbjct: 464 LD----DIEKVRKITIIPRGSVGG 483


>gi|302902973|ref|XP_003048760.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256729694|gb|EEU43047.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 820

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ VA E   NF S  GP
Sbjct: 532 VLFYGPPGTGKTMLAKAVANECAANFISVKGP 563



 Score = 38.9 bits (89), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           VL  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 258 VLLYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 317

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 318 IFIDEIDSIA 327


>gi|71408237|ref|XP_806535.1| replication factor C, subunit 2 [Trypanosoma cruzi strain CL
          Brener]
 gi|70870309|gb|EAN84684.1| replication factor C, subunit 2, putative [Trypanosoma cruzi]
          Length = 347

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 31/56 (55%), Gaps = 4/56 (7%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP TL E   Q EA   L+  ++ + +    + H LF GPPG GKTT    VAREL
Sbjct: 26 RPMTLSEVKSQEEAVCALRASLQPSAS----MPHFLFHGPPGTGKTTAILAVAREL 77


>gi|67470376|ref|XP_651156.1| Activator 1 40 kDa subunit [Entamoeba histolytica HM-1:IMSS]
 gi|56467854|gb|EAL45769.1| Activator 1 40 kDa subunit, putative [Entamoeba histolytica
           HM-1:IMSS]
          Length = 315

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 65/284 (22%), Positives = 118/284 (41%), Gaps = 52/284 (18%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+ L+E  G V+    LK F ++ +       H+L  G PG+GKTT    +A EL +  
Sbjct: 14  RPKLLDEIIGNVDIIKTLKSFRDSKQ-----FPHLLLCGQPGIGKTTSIHCLAHEL-LKD 67

Query: 83  RSTSGPVIAKAGD------LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           R     +   A D      + + + +  ++ ++  D + ++ I+ E            D 
Sbjct: 68  RYKDAVLELNASDERGIETIRSTIKSFCEKKLVLPDNLPKIVILDEA-----------DS 116

Query: 137 MVGEGPSA--RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI--EDLKTIV 192
           M      A  R+++I+      + A      +  P+Q R     RL F  +  E+L   +
Sbjct: 117 MTTAAFQALRRTMEIHSKTTRFVLACNTPEKIIEPIQSRCA---RLTFRPLGEEELMNRI 173

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPR-----------IAGRLLR-RVRDFAEVAHAKT 240
           +  A   G+ + D+A   + + S G  R           I G++ + +V    ++  A  
Sbjct: 174 KEIAHCEGVDIEDDAVKALEIVSEGDMRKAINALQTCAIIQGKITKEQVYQRNDLPSADN 233

Query: 241 ITREIA-------DAALLRL-AIDKMGFDQLDLRYLTMIARNFG 276
           I + I        D AL+ +  + ++GFD  D+  + MI R F 
Sbjct: 234 IIQAIQLCLKKDFDGALIEIKKVQQLGFDGNDI--IDMIVRMFS 275


>gi|326560683|gb|EGE11051.1| recombination factor protein RarA [Moraxella catarrhalis 46P47B1]
          Length = 412

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 64/138 (46%), Gaps = 9/138 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP TL+   GQ    S           R   L  ++  G  G+GKTTLA ++A  +G  
Sbjct: 8   MRPTTLDAVIGQTHLLSEGAPIFNIV--RQGFLPSLILHGSAGIGKTTLAMLLADAVGRP 65

Query: 82  FRSTSGPVIAKAGDLAALLTN----LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           FR  S  V +   +L  +L +      +  V+F+DEIHR +   ++ L  A+E  ++ L+
Sbjct: 66  FRPLSA-VSSGVKELREVLRSDDGLFHEPPVVFVDEIHRFNKAQQDALLQAVETGEITLI 124

Query: 138 --VGEGPSARSVKINLSR 153
               E PS       LSR
Sbjct: 125 GATTENPSFSVNNALLSR 142


>gi|332251959|ref|XP_003275119.1| PREDICTED: nuclear valosin-containing protein isoform 3 [Nomascus
           leucogenys]
          Length = 764

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E G+NF S  GP
Sbjct: 526 VLLAGPPGCGKTLLAKAVANESGLNFISVKGP 557


>gi|319956043|ref|YP_004167306.1| ATP-dependent clp protease, ATP-binding subunit clpa
           [Nitratifractor salsuginis DSM 16511]
 gi|319418447|gb|ADV45557.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Nitratifractor salsuginis DSM 16511]
          Length = 733

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 67/166 (40%), Gaps = 44/166 (26%)

Query: 10  RNVSQEDADISLLRPRTLEE----------------FTGQVEACSNLKVFIEAAKARAEA 53
           +++SQ  + +  L P TLEE                  GQ EA + L    +A K     
Sbjct: 412 KDISQILSRMLKLPPATLEEEDTERLRRLKERLRERIVGQEEAITRLS---QAIKRSYAG 468

Query: 54  LDH-------VLFVGPPGLGKTTLAQVVARELGVNFR------------------STSGP 88
           L+H        LFVGP G+GKT LAQV+A  LGV+F                   +  G 
Sbjct: 469 LNHPESPIGSFLFVGPTGVGKTALAQVLAETLGVHFERLDMSEYMEKHAVSRLIGAPPGY 528

Query: 89  VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           V  + G L   +       VL +DEI +    +  IL   M+  +L
Sbjct: 529 VGYEQGGLLTEMIKKHPHTVLLLDEIEKAHPDIMNILLQVMDSAKL 574


>gi|255956331|ref|XP_002568918.1| Pc21g19270 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211590629|emb|CAP96824.1| Pc21g19270 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 820

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ VA E   NF S  GP
Sbjct: 533 VLFYGPPGTGKTMLAKAVANECAANFISVKGP 564



 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 259 ILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 318

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 319 IFIDEIDSIA 328


>gi|88801469|ref|ZP_01116997.1| AAA ATPase, CDC48 [Polaribacter irgensii 23-P]
 gi|88782127|gb|EAR13304.1| AAA ATPase, CDC48 [Polaribacter irgensii 23-P]
          Length = 717

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 25/43 (58%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           KA       ++  GPPG GKT LA+ VA E GVNF S  GP I
Sbjct: 485 KADTNPPKGIILYGPPGTGKTYLAKAVASESGVNFISVKGPQI 527


>gi|322827699|gb|EFZ31763.1| peroxisome assembly protein, putative [Trypanosoma cruzi]
          Length = 954

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 29/48 (60%), Gaps = 4/48 (8%)

Query: 41  KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           ++F    K RA     +LF GPPG GKT LA+ VA E+ +NF +  GP
Sbjct: 685 ELFSTGTKRRA----GILFYGPPGCGKTLLAKAVATEMNMNFMAVKGP 728


>gi|296229993|ref|XP_002760519.1| PREDICTED: nuclear valosin-containing protein-like isoform 2
           [Callithrix jacchus]
          Length = 765

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E G+NF S  GP
Sbjct: 527 VLLAGPPGCGKTLLAKAVANESGLNFISVKGP 558


>gi|296242922|ref|YP_003650409.1| CDC48 subfamily AAA family ATPase [Thermosphaera aggregans DSM
           11486]
 gi|296095506|gb|ADG91457.1| AAA family ATPase, CDC48 subfamily [Thermosphaera aggregans DSM
           11486]
          Length = 744

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 54/123 (43%), Gaps = 27/123 (21%)

Query: 24  PRTLEEFTGQVE-ACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVV 74
           PR   E  G +E A   ++  +E      E  +H        +L  GPPG GKT LA+ +
Sbjct: 183 PRITWEDIGDLEEAKQKIREIVELPLKNPELFEHLGIEPPKGILLYGPPGTGKTLLAKAL 242

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------------DVLFIDEIHRLSIIV 121
           A E+G  F + +GP I     ++      E+R              V+FIDEI  ++   
Sbjct: 243 ANEIGAYFITINGPEI-----MSKFYGESEERLRKIFEEAEANAPSVIFIDEIDSIAPKR 297

Query: 122 EEI 124
           EE+
Sbjct: 298 EEV 300



 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 8/75 (10%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDR--- 106
           E    +L  GPPG GKT LA+ VA E G NF +  GP V++K  G+    +  +  R   
Sbjct: 494 EPPKGILLFGPPGTGKTLLAKAVATESGANFITVRGPEVLSKWVGESEKAIRQIFRRAKM 553

Query: 107 ---DVLFIDEIHRLS 118
               V+F DEI  ++
Sbjct: 554 VAPSVVFFDEIDSIA 568


>gi|282165489|ref|YP_003357874.1| cell division control protein 48 [Methanocella paludicola SANAE]
 gi|282157803|dbj|BAI62891.1| cell division control protein 48 [Methanocella paludicola SANAE]
          Length = 839

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 40/76 (52%), Gaps = 8/76 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GD----LAALLTNLEDR--DV 108
           VL  GPPG GKT LA+ VA E G  F S +GP I     G+    L  +  N  D    +
Sbjct: 229 VLLHGPPGTGKTLLAKAVANECGAEFFSIAGPEIMSKYYGESEQRLREIFENARDNAPSI 288

Query: 109 LFIDEIHRLSIIVEEI 124
           +FIDE+  ++   EE+
Sbjct: 289 IFIDELDSIAPRREEV 304



 Score = 37.4 bits (85), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 17/32 (53%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           ++  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 500 IVLYGPPGTGKTLLARAVANESEANFISIRGP 531


>gi|170017866|ref|YP_001728785.1| DNA polymerase III, gamma/tau subunit [Leuconostoc citreum KM20]
 gi|169804723|gb|ACA83341.1| DNA polymerase III, gamma/tau subunit [Leuconostoc citreum KM20]
          Length = 604

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 53/118 (44%), Gaps = 27/118 (22%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG- 79
           + RPRT E+  GQ      LK  IE  +         LF GP G GKT+ A++ ARE+  
Sbjct: 9   VYRPRTFEDMIGQEVITQTLKNAIETHQTGHA----YLFSGPRGTGKTSAAKIFAREVNG 64

Query: 80  -------------VNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLS 118
                        V F + S    ++  D+  +L+N++      +  V  IDE+H LS
Sbjct: 65  IAPETDDSQISDIVEFDAASN---SRVEDMRDILSNVDYAPIEAEFKVYIIDEVHMLS 119


>gi|30249257|ref|NP_841327.1| lonA; ATP-dependent proteinase La 1 (lon) (class III heat-shock
           protein) [Nitrosomonas europaea ATCC 19718]
 gi|30180576|emb|CAD85189.1| lonA; ATP-dependent proteinase La 1 (lon) (class III heat-shock
           protein) [Nitrosomonas europaea ATCC 19718]
          Length = 788

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 79/180 (43%), Gaps = 38/180 (21%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           + F GPPG+GKT+L Q +AR L   F R + G V  +A              G++   L 
Sbjct: 360 LCFAGPPGVGKTSLGQSIARALQRPFVRVSLGGVHDEAEMRGHRRTYVGAMPGNIIQGLR 419

Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLS 152
               R+ V+ +DEI +++            EIL P       D  +G       V  +LS
Sbjct: 420 KAGARNCVMMLDEIDKMTASAHGDPAAALLEILDPEQNSTFRDNYLG-------VPFDLS 472

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED-----LKTIVQRGAKLTGLAVTDEA 207
           R   IA    +  +  P++DR  I I L  Y  E+     L+ +VQR ++  GL  TD+ 
Sbjct: 473 RVVFIATANVIDQIPPPVRDRMEI-IDLPGYTQEEKLQIALRYLVQRQSEANGLQ-TDQC 530


>gi|313665403|ref|YP_004047274.1| recombination factor protein RarA [Mycoplasma leachii PG50]
 gi|312950049|gb|ADR24645.1| recombination factor protein RarA [Mycoplasma leachii PG50]
          Length = 411

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 15/117 (12%)

Query: 21  LLRPRTLEEFTGQVEACS-----NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           LLRP++ +   GQ E        N  +      +       ++F GP G+GKT+ A  +A
Sbjct: 8   LLRPKSTKNIIGQTEILKPNGLINKMILNNYCTS-------LIFFGPSGVGKTSFAISLA 60

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIHRLSIIVEEILYPAME 130
            +L +++   +     K   L  ++ N   +++ +L IDEIHRL+   ++IL   ME
Sbjct: 61  NDLKIDYEIFNASY-DKKEKLINIIQNALKKEKFILIIDEIHRLNKDKQDILLEYME 116


>gi|297280699|ref|XP_001096285.2| PREDICTED: nuclear VCP-like isoform 1 [Macaca mulatta]
          Length = 765

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E G+NF S  GP
Sbjct: 527 VLLAGPPGCGKTLLAKAVANESGLNFISVKGP 558


>gi|170036949|ref|XP_001846323.1| spermatogenesis associated factor [Culex quinquefasciatus]
 gi|167879951|gb|EDS43334.1| spermatogenesis associated factor [Culex quinquefasciatus]
          Length = 797

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 505 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARSASPCV 564

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 565 LFFDELDSIA 574



 Score = 37.7 bits (86), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 232 ILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAI 291

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 292 IFIDEIDAIA 301


>gi|167396191|ref|XP_001741947.1| replication factor C subunit [Entamoeba dispar SAW760]
 gi|165893256|gb|EDR21578.1| replication factor C subunit, putative [Entamoeba dispar SAW760]
          Length = 315

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 65/284 (22%), Positives = 118/284 (41%), Gaps = 52/284 (18%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+ L+E  G V+    LK F ++ +       H+L  G PG+GKTT    +A EL +  
Sbjct: 14  RPKLLDEIIGNVDIIKTLKSFRDSKQ-----FPHLLLCGQPGIGKTTSIHCLAHEL-LKD 67

Query: 83  RSTSGPVIAKAGD------LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           R     +   A D      + + + +  ++ ++  D + ++ I+ E            D 
Sbjct: 68  RYKEAVLELNASDERGIETIRSTIKSFCEKKLVLPDNLPKIVILDEA-----------DS 116

Query: 137 MVGEGPSA--RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI--EDLKTIV 192
           M      A  R+++I+      + A      +  P+Q R     RL F  +  E+L   +
Sbjct: 117 MTTAAFQALRRTMEIHSKTTRFVLACNTPEKIIEPIQSRCA---RLTFRPLGEEELMNRI 173

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPR-----------IAGRLLR-RVRDFAEVAHAKT 240
           +  A+   + + D+A   + + S G  R           I GR+ + +V    ++  A  
Sbjct: 174 KEIARCENVDIEDDAVKALEIVSEGDMRKAINALQTCAIIQGRITKEQVYQRNDLPSADN 233

Query: 241 ITREIA-------DAALLRL-AIDKMGFDQLDLRYLTMIARNFG 276
           I + I        D AL+ +  + ++GFD  D+  + MI R F 
Sbjct: 234 IIQAIQLCLKKDFDGALIEIKKVQQLGFDGNDI--MDMIVRMFS 275


>gi|167840344|ref|ZP_02467028.1| cell division control protein 48 ATPase of AAA family CDC48
           subfamily [Burkholderia thailandensis MSMB43]
          Length = 622

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 21/41 (51%), Positives = 25/41 (60%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +A A+    +L VGPPG GKT LA+  A E GVNF    GP
Sbjct: 393 RAGAKPSKGILLVGPPGCGKTWLAKAAANECGVNFIPVKGP 433



 Score = 39.3 bits (90), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 23/39 (58%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +A   VL  GPPG GKT +A+ +A E    F S SGP +
Sbjct: 124 DAPKGVLLYGPPGCGKTLIARAIAHECDAAFFSVSGPEV 162


>gi|145259126|ref|XP_001402275.1| cell division control protein 48 [Aspergillus niger CBS 513.88]
 gi|134074895|emb|CAK39004.1| unnamed protein product [Aspergillus niger]
          Length = 820

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ VA E   NF S  GP
Sbjct: 533 VLFYGPPGTGKTMLAKAVANECAANFISVKGP 564



 Score = 38.1 bits (87), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 259 ILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 318

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 319 IFIDEIDSIA 328


>gi|71405010|ref|XP_805160.1| peroxisome assembly protein [Trypanosoma cruzi strain CL Brener]
 gi|70868457|gb|EAN83309.1| peroxisome assembly protein, putative [Trypanosoma cruzi]
          Length = 873

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 29/48 (60%), Gaps = 4/48 (8%)

Query: 41  KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           ++F    K RA     +LF GPPG GKT LA+ VA E+ +NF +  GP
Sbjct: 684 ELFSTGTKRRA----GILFYGPPGCGKTLLAKAVATEMNMNFMAVKGP 727


>gi|66806375|ref|XP_636910.1| cell division cycle protein 48 [Dictyostelium discoideum AX4]
 gi|4996891|gb|AAB40928.2| cell division cycle protein 48 [Dictyostelium discoideum]
 gi|60465285|gb|EAL63377.1| cell division cycle protein 48 [Dictyostelium discoideum AX4]
          Length = 793

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  L D+       V
Sbjct: 512 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRELFDKARQAAPCV 571

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 572 LFFDELDSIA 581



 Score = 39.3 bits (90), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 239 ILLYGPPGCGKTMIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 298

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 299 IFIDEIDSIA 308


>gi|145351488|ref|XP_001420108.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580341|gb|ABO98401.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 437

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 56/119 (47%), Gaps = 15/119 (12%)

Query: 11  NVSQEDADISLLRPRTLEEFTG-------QVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           N++  + D ++ +  TL++ TG         E  S LK F +     A     VL  GPP
Sbjct: 45  NMTTRNYDSNVRQGMTLKDITGIDNVKAEMFELISYLKDFEKYNSMGARIPAGVLLCGPP 104

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEI 114
           G GKT LA+ VA E  V F S +G    +   G  AA + NL D+       ++FIDE 
Sbjct: 105 GTGKTLLARCVAGEANVPFFSCAGTEFMEMFVGVGAARIRNLFDQAKKVAPCIIFIDEF 163


>gi|157132226|ref|XP_001662523.1| spermatogenesis associated factor [Aedes aegypti]
 gi|108871250|gb|EAT35475.1| spermatogenesis associated factor [Aedes aegypti]
          Length = 720

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 511 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARSASPCV 570

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 571 LFFDELDSIA 580



 Score = 37.0 bits (84), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLEDRD--V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I          +L       E +   +
Sbjct: 238 ILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKKSPAI 297

Query: 109 LFIDEI 114
           +FIDE+
Sbjct: 298 IFIDEL 303


>gi|326571804|gb|EGE21810.1| recombination factor protein RarA [Moraxella catarrhalis BC7]
          Length = 412

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 64/138 (46%), Gaps = 9/138 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP TL+   GQ    S           R   L  ++  G  G+GKTTLA ++A  +G  
Sbjct: 8   MRPTTLDAVIGQTHLLSEGAPIFNIV--RQGFLPSLILHGSAGIGKTTLAMLLADAVGRP 65

Query: 82  FRSTSGPVIAKAGDLAALLTN----LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           FR  S  V +   +L  +L +      +  V+F+DEIHR +   ++ L  A+E  ++ L+
Sbjct: 66  FRPLSA-VSSGVKELREVLRSDDGLFHEPPVVFVDEIHRFNKAQQDALLQAVETGEITLI 124

Query: 138 --VGEGPSARSVKINLSR 153
               E PS       LSR
Sbjct: 125 GATTENPSFSVNNALLSR 142


>gi|297483981|ref|XP_002694038.1| PREDICTED: nuclear VCP-like [Bos taurus]
 gi|296479315|gb|DAA21430.1| nuclear VCP-like [Bos taurus]
          Length = 864

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E G+NF S  GP
Sbjct: 626 VLLAGPPGCGKTLLAKAVANESGLNFISVKGP 657


>gi|255535502|ref|YP_003095873.1| putative DNA polymerase III [Flavobacteriaceae bacterium 3519-10]
 gi|255341698|gb|ACU07811.1| putative DNA polymerase III [Flavobacteriaceae bacterium 3519-10]
          Length = 367

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 97/221 (43%), Gaps = 23/221 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  +   GQ      L+  IE  +  A+AL   LF GP G+GKTT A+++AR++    
Sbjct: 12  RPQEFDTVVGQSHITDTLEHAIEENQL-AQAL---LFCGPRGVGKTTCARILARKINERD 67

Query: 83  RSTSG--------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI-IVEEILYPAMEDFQ 133
            STS          + A + +    + +L D+ V F  ++ +  I I++E+   +   F 
Sbjct: 68  GSTSEDGFSYNIFELDAASNNGVEEIRDLTDQ-VRFAPQVGKYKIYIIDEVHMLSSAAFN 126

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
             L   E P A ++         I ATT    +   +  R  I        IED++  ++
Sbjct: 127 AFLKTLEEPPAHAI--------FILATTEKHKIIPTILSRCQI-YDFKRITIEDIQNQLR 177

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
             A   G+   D+A   +A ++ G  R A  +  R+  F +
Sbjct: 178 NIADKEGIKYEDDALYMVAQKADGALRDALSIFDRLSTFTQ 218


>gi|226227754|ref|YP_002761860.1| ATP-dependent Lon protease [Gemmatimonas aurantiaca T-27]
 gi|226090945|dbj|BAH39390.1| ATP-dependent Lon protease [Gemmatimonas aurantiaca T-27]
          Length = 835

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 73/163 (44%), Gaps = 33/163 (20%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           + FVGPPG GKT+L + +A+ +   F R + G V  +A              G L   L 
Sbjct: 365 LCFVGPPGTGKTSLGEAIAKSIDRAFYRISVGGVRDEAEIRGHRRTYVGAMPGMLIQALR 424

Query: 102 NLEDRD-VLFIDEIHRLS---------IIVEEILYPAMEDFQLDLMVGEGPSARSVKINL 151
            +E RD V+ IDEI ++S           + E+L P+     +D  +       ++  +L
Sbjct: 425 RVEVRDPVIMIDEIDKMSSGGSGGDPTAAMLEVLDPSQNTTFVDHYL-------NLPFDL 477

Query: 152 SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           S    I     +  +  PL+DR  + IR+  Y IE+   I QR
Sbjct: 478 SSTLFICTANNLFDIPGPLRDRMEV-IRIAGYTIEEKVEIAQR 519


>gi|296004694|ref|XP_966179.2| cell division cycle protein 48 homologue, putative [Plasmodium
           falciparum 3D7]
 gi|225631753|emb|CAG25009.2| cell division cycle protein 48 homologue, putative [Plasmodium
           falciparum 3D7]
          Length = 828

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ VA E   NF S  GP
Sbjct: 517 VLFYGPPGCGKTLLAKAVASECSANFVSIKGP 548



 Score = 40.0 bits (92), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTN-LEDRD-----V 108
           VL  GPPG GKT +A+ VA E G  F   +GP V++K AG+  A L    E+ +     +
Sbjct: 244 VLLYGPPGSGKTCIARAVANETGAFFFLINGPEVMSKMAGEAEANLRRAFEEAEKNSPAI 303

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 304 IFIDEIDSIA 313


>gi|171685948|ref|XP_001907915.1| hypothetical protein [Podospora anserina S mat+]
 gi|170942935|emb|CAP68588.1| unnamed protein product [Podospora anserina S mat+]
          Length = 824

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ VA E   NF S  GP
Sbjct: 535 VLFYGPPGTGKTMLAKAVANECAANFISVKGP 566



 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           VL  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 261 VLLFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 320

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 321 IFIDEIDSIA 330


>gi|163783714|ref|ZP_02178701.1| Lon protease [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881039|gb|EDP74556.1| Lon protease [Hydrogenivirga sp. 128-5-R1-1]
          Length = 773

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 101/257 (39%), Gaps = 64/257 (24%)

Query: 59  FVGPPGLGKTTLAQVVARELGVNF------------------RSTSGPVIAKAGDLAALL 100
           FVGPPG+GKT+L + +A  LG  F                  R+  G +  +   + A+ 
Sbjct: 348 FVGPPGVGKTSLGKSIAEALGRKFVRIALGGIRDEAEIRGHRRTYVGAMPGRI--IQAIK 405

Query: 101 TNLEDRDVLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLS 152
                  ++ +DEI +L++  +        E+L P       DL +G       +  +LS
Sbjct: 406 QAGTKNPLIMLDEIDKLAMSFQGDPASALLEVLDPEQNKNFTDLYIG-------LPFDLS 458

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR----------GAKLTGLA 202
               I    R+  +  PL DR  + I+L+ Y  E+   I Q+          G K   + 
Sbjct: 459 EVIFICTGNRMDTIPTPLLDRMEL-IQLSGYSEEEKLFIAQKHLLPKLIPLHGLKEEEIQ 517

Query: 203 VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQ 262
             DEA  EI    RG  R AG               + + R+I+ + L ++A+ K+  ++
Sbjct: 518 FEDEAILEII---RGYTREAG--------------VRNLQRQIS-SVLRKIAVKKLKGEE 559

Query: 263 LDLRYLTMIARNFGGGP 279
              R      R   G P
Sbjct: 560 GPFRITKEDIRKLLGVP 576


>gi|121717057|ref|XP_001275994.1| cell division control protein Cdc48 [Aspergillus clavatus NRRL 1]
 gi|119404151|gb|EAW14568.1| cell division control protein Cdc48 [Aspergillus clavatus NRRL 1]
          Length = 819

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ VA E   NF S  GP
Sbjct: 533 VLFYGPPGTGKTMLAKAVANECAANFISVKGP 564



 Score = 38.1 bits (87), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 259 ILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 318

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 319 IFIDEIDSIA 328


>gi|327310719|ref|YP_004337616.1| AAA family ATPase [Thermoproteus uzoniensis 768-20]
 gi|326947198|gb|AEA12304.1| AAA family ATPase, possible cell division control protein cdc48
           [Thermoproteus uzoniensis 768-20]
          Length = 730

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 51/117 (43%), Gaps = 16/117 (13%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVA 75
           P T E+     EA   ++  +E      E   H        +L  GPPG GKT LA+ VA
Sbjct: 174 PVTWEDIGDLEEAKQKIRELVELPLRHPELFKHLGIEPPKGILLFGPPGTGKTLLAKAVA 233

Query: 76  RELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DVLFIDEIHRLSIIVEEI 124
            E    F + +GP I     G+  A L  + D        ++FIDEI  ++   EE+
Sbjct: 234 NEANAYFIAINGPEIMSKYYGESEAKLREIFDEAKKNAPAIIFIDEIDAIAPKREEV 290



 Score = 43.1 bits (100), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLAALLTNLEDRD------V 108
           +L  GPPG GKT LA+ VA E G NF +  GP I     G+   ++  +  +       V
Sbjct: 490 ILLFGPPGTGKTLLAKAVATESGANFIAVRGPEIFSKWVGESEKMIREIFQKARMAAPCV 549

Query: 109 LFIDEIHRLS 118
           +FIDEI  L+
Sbjct: 550 VFIDEIDALA 559


>gi|297734936|emb|CBI17170.3| unnamed protein product [Vitis vinifera]
          Length = 927

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 460 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTKWFGESEANVREIFDKARQSASCV 519

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 520 LFFDELDSIA 529



 Score = 38.1 bits (87), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT +A+ VA E G  F   +GP I
Sbjct: 200 ILLYGPPGSGKTLIAKAVANETGAFFFCINGPEI 233


>gi|15594806|ref|NP_212595.1| DNA polymerase III subunits gamma and tau [Borrelia burgdorferi
           B31]
 gi|2688379|gb|AAC66831.1| DNA polymerase III, subunits gamma and tau (dnaX) [Borrelia
           burgdorferi B31]
          Length = 560

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 96/228 (42%), Gaps = 25/228 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPR      GQ      LK  IE  K  A A    +F GP G+GKT+ A+  AR L    
Sbjct: 12  RPRDFNSLEGQDFVVETLKHSIEKNKI-ANAY---IFSGPRGVGKTSSARAFARCLNC-- 65

Query: 83  RSTSGPVIAKAGDLAAL--LTNLEDRDVLFIDEIHRLSI-----IVEEILY-PAMEDF-- 132
              +GP +   G+ +    + N    DV+ ID     S+     I EEI++ PA+  +  
Sbjct: 66  --RNGPTVMPCGECSNCKSIENDSSLDVVEIDGASNTSVQDIRQIKEEIMFPPAISKYRI 123

Query: 133 ----QLDLMVGEGPSA--RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
               ++ ++     +A  ++++   +    I ATT    L   ++ R           ++
Sbjct: 124 YIIDEVHMLSNSAFNALLKTIEEPPNYIVFIFATTESHKLPETIKSRCQ-HFSFKLLSLD 182

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
            +  ++++      +   DEA   IA +S G+ R A  L  ++  F +
Sbjct: 183 KIYNMLKKVCLEDDIKYEDEALKWIAYKSSGSVRDAYTLFDQIVSFTD 230


>gi|169775759|ref|XP_001822346.1| cell division control protein 48 [Aspergillus oryzae RIB40]
 gi|238502409|ref|XP_002382438.1| cell division control protein Cdc48 [Aspergillus flavus NRRL3357]
 gi|83771081|dbj|BAE61213.1| unnamed protein product [Aspergillus oryzae]
 gi|220691248|gb|EED47596.1| cell division control protein Cdc48 [Aspergillus flavus NRRL3357]
          Length = 821

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ VA E   NF S  GP
Sbjct: 533 VLFYGPPGTGKTMLAKAVANECAANFISVKGP 564



 Score = 38.1 bits (87), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 259 ILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 318

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 319 IFIDEIDSIA 328


>gi|85691123|ref|XP_965961.1| ATPase [Encephalitozoon cuniculi GB-M1]
 gi|74697616|sp|Q8SSJ5|CDC48_ENCCU RecName: Full=Cell division control protein 48
 gi|19068528|emb|CAD24996.1| PROTEIN OF THE CDC48/PAS1/SEC28 FAMILY OF ATPases [Encephalitozoon
           cuniculi GB-M1]
          Length = 780

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ VA E   NF S  GP +     G+  + + +L  R       V
Sbjct: 518 VLFYGPPGCGKTLLAKAVATECKANFISIKGPELLSMWVGESESNIRDLFARARGAAPCV 577

Query: 109 LFIDEIHRLS 118
           LF DEI  ++
Sbjct: 578 LFFDEIDSIA 587



 Score = 36.2 bits (82), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ +A E G      +GP I    AG+  + L    E+ +     +
Sbjct: 245 ILLYGPPGTGKTLIARAIANETGAFLFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 304

Query: 109 LFIDEIHRLS 118
           +FIDEI  L+
Sbjct: 305 IFIDEIDALA 314


>gi|116747549|ref|YP_844236.1| ATP-dependent protease La [Syntrophobacter fumaroxidans MPOB]
 gi|302425098|sp|A0LEE9|LON1_SYNFM RecName: Full=Lon protease 1; AltName: Full=ATP-dependent protease
           La 1
 gi|116696613|gb|ABK15801.1| Lon-A peptidase. Serine peptidase. MEROPS family S16
           [Syntrophobacter fumaroxidans MPOB]
          Length = 815

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 92/222 (41%), Gaps = 55/222 (24%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           + FVGPPG+GKT+LA+ +AR +  NF R + G V  +A              G +   L 
Sbjct: 360 LCFVGPPGVGKTSLAKSIARAMNRNFIRLSLGGVRDEAEIRGHRRTYIGAMPGKIIQSLK 419

Query: 102 NLEDRDVLF-IDEIHRLSIIVE--------EILYP----AMEDFQLDLMVGEGPSARSVK 148
            ++  + +F +DE+ ++S+           E+L P    +  D  LDL            
Sbjct: 420 KVKSNNPVFCLDEVDKMSMDFRGDPSAALLEVLDPEQNFSFNDHYLDL-----------D 468

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT----IVQRGAKLTGLAVT 204
            +LS    I     +  +  PL+DR  I     + E + L      +V +  K  GL++ 
Sbjct: 469 YDLSEVFFITTANNLHSIPPPLRDRMEIIQIAGYTEFDKLNIGRNFLVAKQCKANGLSLD 528

Query: 205 DEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           + A  +              LL  +R + + A  + + REIA
Sbjct: 529 NIAFSD------------DMLLYIIRHYTKEAGVRNLEREIA 558


>gi|326562332|gb|EGE12658.1| recombination factor protein RarA [Moraxella catarrhalis 103P14B1]
 gi|326575536|gb|EGE25461.1| recombination factor protein RarA [Moraxella catarrhalis 101P30B1]
          Length = 412

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 64/138 (46%), Gaps = 9/138 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP TL+   GQ    S           R   L  ++  G  G+GKTTLA ++A  +G  
Sbjct: 8   MRPTTLDAVIGQTHLLSEGAPIFNIV--RQGFLPSLILHGSAGIGKTTLAMLLADAVGRP 65

Query: 82  FRSTSGPVIAKAGDLAALLTN----LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           FR  S  V +   +L  +L +      +  V+F+DEIHR +   ++ L  A+E  ++ L+
Sbjct: 66  FRPLSA-VSSGVKELREVLRSDDGLFHEPPVVFVDEIHRFNKAQQDALLQAVETGEITLI 124

Query: 138 --VGEGPSARSVKINLSR 153
               E PS       LSR
Sbjct: 125 GATTENPSFSVNNALLSR 142


>gi|320583346|gb|EFW97561.1| DNA replication ATPase [Pichia angusta DL-1]
          Length = 769

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 68/143 (47%), Gaps = 16/143 (11%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP +LE++ GQ         L+ FI+  +     +  ++  G PG GKTTLA++++   
Sbjct: 348 LRPSSLEDYIGQEHLVGEGGILRGFIQNDR-----IPSLILWGYPGTGKTTLARIISHAT 402

Query: 79  GVNF---RSTSGPV--IAKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMEDF 132
              F    +TS  +    +  + A     L  R  ++FIDEIHR +   ++I  P +E  
Sbjct: 403 KSRFIELSATSNGISDCKRVFEEARNEYKLTKRHTIVFIDEIHRFNKAQQDIFLPHVEKG 462

Query: 133 QLDLM--VGEGPSARSVKINLSR 153
            + L+    E PS +     LSR
Sbjct: 463 TITLVGATTENPSFQLNSALLSR 485


>gi|302803690|ref|XP_002983598.1| hypothetical protein SELMODRAFT_624 [Selaginella moellendorffii]
 gi|300148841|gb|EFJ15499.1| hypothetical protein SELMODRAFT_624 [Selaginella moellendorffii]
          Length = 516

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNL------EDRDV 108
           VL  GPPG GKT+LAQ VA+E GV     +GP  V    G+  A +  +      E   V
Sbjct: 40  VLLYGPPGTGKTSLAQAVAKEAGVKMLVINGPEIVTEYHGESEAAMKAIFDLAAREAPSV 99

Query: 109 LFIDEI 114
           +FIDE+
Sbjct: 100 VFIDEL 105



 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 33/71 (46%), Gaps = 8/71 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--------AKAGDLAALLTNLEDRDV 108
           VL  GPPG  KT +A+ VA E G+NF +  GP +         KA              V
Sbjct: 306 VLLYGPPGCSKTMMARAVAAETGLNFIAVKGPELFSKWVGESEKAVRALFARAKAAAPSV 365

Query: 109 LFIDEIHRLSI 119
           +F DEI  L+I
Sbjct: 366 VFFDEIDGLAI 376


>gi|296229991|ref|XP_002760518.1| PREDICTED: nuclear valosin-containing protein-like isoform 1
           [Callithrix jacchus]
          Length = 856

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E G+NF S  GP
Sbjct: 618 VLLAGPPGCGKTLLAKAVANESGLNFISVKGP 649


>gi|212529968|ref|XP_002145141.1| cell division control protein Cdc48 [Penicillium marneffei ATCC
           18224]
 gi|210074539|gb|EEA28626.1| cell division control protein Cdc48 [Penicillium marneffei ATCC
           18224]
          Length = 822

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ VA E   NF S  GP
Sbjct: 533 VLFYGPPGTGKTMLAKAVANECSANFISVKGP 564



 Score = 38.1 bits (87), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 259 ILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 318

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 319 IFIDEIDSIA 328


>gi|168049525|ref|XP_001777213.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671441|gb|EDQ57993.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 513 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDVFDKARQSAPCV 572

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 573 LFFDELDSIA 582



 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 240 ILLFGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 299

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 300 IFIDEIDSIA 309


>gi|115385577|ref|XP_001209335.1| cell division cycle protein 48 [Aspergillus terreus NIH2624]
 gi|114187782|gb|EAU29482.1| cell division cycle protein 48 [Aspergillus terreus NIH2624]
          Length = 821

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ VA E   NF S  GP
Sbjct: 533 VLFYGPPGTGKTMLAKAVANECAANFISVKGP 564



 Score = 38.1 bits (87), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 259 ILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 318

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 319 IFIDEIDSIA 328


>gi|109018123|ref|XP_001096627.1| PREDICTED: nuclear VCP-like isoform 4 [Macaca mulatta]
          Length = 856

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E G+NF S  GP
Sbjct: 618 VLLAGPPGCGKTLLAKAVANESGLNFISVKGP 649


>gi|12856485|dbj|BAB30684.1| unnamed protein product [Mus musculus]
          Length = 490

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 21/32 (65%), Positives = 23/32 (71%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT LA VVARE G+NF S  GP
Sbjct: 84  ILLYGPPGTGKTLLAGVVARESGMNFISIKGP 115


>gi|300857391|ref|YP_003782375.1| ATP-dependent protease LA [Clostridium ljungdahlii DSM 13528]
 gi|300437506|gb|ADK17273.1| ATP-dependent protease LA [Clostridium ljungdahlii DSM 13528]
          Length = 631

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 12/77 (15%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           ++D +GL S+N+ +      LLRP T +E  GQ  A  ++      +K  +    H++  
Sbjct: 151 VLDSKGL-SKNIQK------LLRPETFDEIIGQERAIKSI-----LSKIASPYPQHIILY 198

Query: 61  GPPGLGKTTLAQVVARE 77
           GPPG+GKTT A++   E
Sbjct: 199 GPPGVGKTTAARIALEE 215


>gi|296114100|ref|YP_003628038.1| recombination protein MgsA [Moraxella catarrhalis RH4]
 gi|295921794|gb|ADG62145.1| recombination protein MgsA [Moraxella catarrhalis RH4]
          Length = 412

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 64/138 (46%), Gaps = 9/138 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP TL+   GQ    S           R   L  ++  G  G+GKTTLA ++A  +G  
Sbjct: 8   MRPTTLDAVIGQTHLLSEGAPIFNIV--RQGFLPSLILHGSAGIGKTTLAMLLADAVGRP 65

Query: 82  FRSTSGPVIAKAGDLAALLTN----LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           FR  S  V +   +L  +L +      +  V+F+DEIHR +   ++ L  A+E  ++ L+
Sbjct: 66  FRPLSA-VSSGVKELREVLRSDDGLFHEPPVVFVDEIHRFNKAQQDALLQAVETGEITLI 124

Query: 138 --VGEGPSARSVKINLSR 153
               E PS       LSR
Sbjct: 125 GATTENPSFSVNNALLSR 142


>gi|325680328|ref|ZP_08159888.1| recombination factor protein RarA [Ruminococcus albus 8]
 gi|324108037|gb|EGC02293.1| recombination factor protein RarA [Ruminococcus albus 8]
          Length = 423

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 68/145 (46%), Gaps = 16/145 (11%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP+TL+E  GQ         L+  IE+       + +++F GP G+GKTT+A+ +A   
Sbjct: 9   IRPKTLDEIVGQTHLMGEGKPLRRIIESG-----TIPNLIFYGPSGVGKTTIARFIAENA 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE-----DRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
            +     +G   A   D+  ++   E     +  +L++DEI  L+   ++ L   +E+  
Sbjct: 64  NMTMYKLNG-TSASVADIKNIIAETEMLSGMNGILLYLDEIQYLNKKQQQSLLEYIENGS 122

Query: 134 LDLMVG--EGPSARSVKINLSRFTL 156
           + L+    E P        +SR T+
Sbjct: 123 ITLISSTTENPYFYVYNAIISRSTV 147


>gi|281204558|gb|EFA78753.1| cell division cycle protein 48 [Polysphondylium pallidum PN500]
          Length = 791

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  L D+       V
Sbjct: 510 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRELFDKARQAAPCV 569

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 570 LFFDELDSIA 579



 Score = 38.9 bits (89), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 237 ILLYGPPGCGKTMIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 296

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 297 IFIDEIDSIA 306


>gi|15082383|gb|AAH12105.1| NVL protein [Homo sapiens]
 gi|325464593|gb|ADZ16067.1| nuclear VCP-like [synthetic construct]
          Length = 659

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E G+NF S  GP
Sbjct: 421 VLLAGPPGCGKTLLAKAVANESGLNFISVKGP 452


>gi|42780219|ref|NP_977466.1| stage V sporulation protein K [Bacillus cereus ATCC 10987]
 gi|42736138|gb|AAS40074.1| stage V sporulation protein K [Bacillus cereus ATCC 10987]
          Length = 1930

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 60/206 (29%), Positives = 92/206 (44%), Gaps = 51/206 (24%)

Query: 56   HVLFVGPPGLGKTTLAQVVAR---ELGVNFRSTSGPVIAKAGDLAALL--TNLEDRD--- 107
            H++F G PG GKTT+A+VVA    +LG+   S     + ++G +A  +  T ++ ++   
Sbjct: 1713 HMIFTGNPGTGKTTVARVVAELLYQLGI-LSSNKVIEVDRSGLVAGYVGQTAIKTKEVIQ 1771

Query: 108  -----VLFIDEIHRLSIIVE----------EILYPAMEDFQLDLMVGEGPSARSVKINLS 152
                 VLFIDE + L+  V           + L  AMED++ DL+V              
Sbjct: 1772 SALGGVLFIDEAYALAKDVNTSHGFGKEAIDTLLKAMEDYREDLIV-------------- 1817

Query: 153  RFTLIAATTR--VGLL-TNP-LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAA 208
               ++A  T    G L TNP L+ R    I    Y +++L  + ++  K  G  +T EAA
Sbjct: 1818 ---ILAGYTDEMEGFLNTNPGLRSRIPNKIEFKDYSVDELLQMGEKMFKENGYELT-EAA 1873

Query: 209  CEIAMRSRGTPRIA-----GRLLRRV 229
             E         R A     GR +R V
Sbjct: 1874 YEKLREKTEIARTAEQFGNGRYVRNV 1899



 Score = 40.0 bits (92), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 71/172 (41%), Gaps = 35/172 (20%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPV------------IAKAGDLAALLTNL 103
           + +F G PG GKTT+A++VA+ L      +SG +            + + G     + + 
Sbjct: 625 NFIFTGNPGTGKTTIARLVAKYLKALGYLSSGHLVEVDRARLVAQYVGQTGPKTQAVIDS 684

Query: 104 EDRDVLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLSRFT 155
               VLFIDE + L+   E        + L   MED + DL+V         K  +  F 
Sbjct: 685 AKGGVLFIDEAYSLARGGENDFGKEAIDTLVKGMEDLREDLVV----ILAGYKDEMDDF- 739

Query: 156 LIAATTRVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDE 206
                    L TNP LQ RF   I    Y  E+L  I ++  +  G  + D+
Sbjct: 740 ---------LKTNPGLQSRFNNHIDFPDYTSEELFMISEKIVESEGFTIADD 782


>gi|46122305|ref|XP_385706.1| hypothetical protein FG05530.1 [Gibberella zeae PH-1]
          Length = 821

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ VA E   NF S  GP
Sbjct: 533 VLFFGPPGTGKTMLAKAVANECAANFISVKGP 564



 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           VL  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 259 VLLFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 318

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 319 IFIDEIDSIA 328


>gi|312149771|gb|ADQ29842.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi
           N40]
          Length = 560

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 96/228 (42%), Gaps = 25/228 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPR      GQ      LK  IE  K  A A    +F GP G+GKT+ A+  AR L    
Sbjct: 12  RPRDFNSLEGQDFVVETLKHSIEKNKI-ANAY---IFSGPRGVGKTSSARAFARCLNC-- 65

Query: 83  RSTSGPVIAKAGDLAAL--LTNLEDRDVLFIDEIHRLSI-----IVEEILY-PAMEDF-- 132
              +GP +   G+ +    + N    DV+ ID     S+     I EEI++ PA+  +  
Sbjct: 66  --RNGPTVMPCGECSNCKSIENDSSLDVVEIDGASNTSVQDIRQIKEEIMFPPAISKYRI 123

Query: 133 ----QLDLMVGEGPSA--RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
               ++ ++     +A  ++++   +    I ATT    L   ++ R           ++
Sbjct: 124 YIIDEVHMLSNSAFNALLKTIEEPPNYIVFIFATTESHKLPETIKSRCQ-HFSFKLLSLD 182

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
            +  ++++      +   DEA   IA +S G+ R A  L  ++  F +
Sbjct: 183 KIYNMLKKVCLEDDIKYEDEALKWIAYKSSGSVRDAYTLFDQIVSFTD 230


>gi|119590121|gb|EAW69715.1| nuclear VCP-like, isoform CRA_b [Homo sapiens]
          Length = 687

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E G+NF S  GP
Sbjct: 449 VLLAGPPGCGKTLLAKAVANESGLNFISVKGP 480


>gi|332251955|ref|XP_003275117.1| PREDICTED: nuclear valosin-containing protein isoform 1 [Nomascus
           leucogenys]
          Length = 855

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E G+NF S  GP
Sbjct: 617 VLLAGPPGCGKTLLAKAVANESGLNFISVKGP 648


>gi|326574344|gb|EGE24287.1| recombination factor protein RarA [Moraxella catarrhalis CO72]
          Length = 412

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 64/138 (46%), Gaps = 9/138 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP TL+   GQ    S           R   L  ++  G  G+GKTTLA ++A  +G  
Sbjct: 8   MRPTTLDAVIGQTHLLSEGAPIFNIV--RQGFLPSLILHGSAGIGKTTLAMLLADAVGRP 65

Query: 82  FRSTSGPVIAKAGDLAALLTN----LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           FR  S  V +   +L  +L +      +  V+F+DEIHR +   ++ L  A+E  ++ L+
Sbjct: 66  FRPLSA-VSSGVKELREVLRSDDGLFHEPPVVFVDEIHRFNKAQQDALLQAVETGEITLI 124

Query: 138 --VGEGPSARSVKINLSR 153
               E PS       LSR
Sbjct: 125 GATTENPSFSVNNALLSR 142


>gi|325184659|emb|CCA19151.1| hypothetical protein SELMODRAFT_145748 [Albugo laibachii Nc14]
          Length = 799

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ VA E   NF S  GP +     G+  A +  + D+       V
Sbjct: 510 VLFYGPPGCGKTLLAKAVANECQANFISVKGPELLTMWFGESEANVREVFDKARSAAPCV 569

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 570 LFFDELDSIA 579



 Score = 38.5 bits (88), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           VL  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 237 VLLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNAPAI 296

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 297 IFIDEIDSIA 306


>gi|310789403|gb|EFQ24936.1| AAA family ATPase [Glomerella graminicola M1.001]
          Length = 819

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ VA E   NF S  GP
Sbjct: 534 VLFYGPPGTGKTMLAKAVANECSANFISVKGP 565



 Score = 38.9 bits (89), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           VL  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 260 VLLYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 319

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 320 IFIDEIDSIA 329


>gi|255710811|ref|XP_002551689.1| KLTH0A05324p [Lachancea thermotolerans]
 gi|238933066|emb|CAR21247.1| KLTH0A05324p [Lachancea thermotolerans]
          Length = 832

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ VA E+  NF S  GP
Sbjct: 524 VLFYGPPGTGKTLLAKAVATEVSANFISVKGP 555



 Score = 38.5 bits (88), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP V++K AG+  + L    E+ +     +
Sbjct: 251 ILMYGPPGTGKTLMARAVANETGAFFFLINGPEVMSKMAGESESNLRKAFEEAEKNAPAI 310

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 311 IFIDEIDSIA 320


>gi|242309929|ref|ZP_04809084.1| endopeptidase clp ATP-binding chain a [Helicobacter pullorum MIT
           98-5489]
 gi|239523226|gb|EEQ63092.1| endopeptidase clp ATP-binding chain a [Helicobacter pullorum MIT
           98-5489]
          Length = 737

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 18/108 (16%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFR-----------STSGPVIAKAG----DLAALLTN 102
           LF GP G+GKT LA+ +A+ LG+NF            S SG + A AG    D   +LT 
Sbjct: 478 LFSGPSGVGKTELAKEIAKALGINFERIDMSEYMEKYSISGLIGAPAGYVGYDKGGILTE 537

Query: 103 LEDRD---VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSV 147
           +  ++   +L +DEI +    V  +    M++ +L    GE     SV
Sbjct: 538 MIKKNPHTLLLLDEIEKAHPDVLNLFLQVMDNAKLTDNNGESADFSSV 585


>gi|197103173|ref|YP_002128551.1| ATP-dependent protease LA [Phenylobacterium zucineum HLK1]
 gi|302425068|sp|B4RI01|LON_PHEZH RecName: Full=Lon protease; AltName: Full=ATP-dependent protease La
 gi|196480449|gb|ACG79976.1| ATP-dependent protease LA [Phenylobacterium zucineum HLK1]
          Length = 792

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 73/166 (43%), Gaps = 40/166 (24%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVI--------------AKAGDLAALLT 101
           + FVGPPG+GKT+L Q +AR +   F R + G V               A  G++   + 
Sbjct: 357 LCFVGPPGVGKTSLGQSIARAMHRPFVRVSLGGVHDESEIRGHRRTYVGALPGNIIQAIR 416

Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYP----AMEDFQLDLMVGEGPSARSVK 148
               RD V+ +DEI ++S  +         E+L P    A  D  L           +V 
Sbjct: 417 KAGRRDCVMMLDEIDKMSAGIHGDPSAALLEVLDPEQNVAFRDNYL-----------AVP 465

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
            +LSR   IA    +  +  PL+DR  + I+L+ Y   + + I +R
Sbjct: 466 FDLSRVVFIATANMLDTIPGPLRDRMEV-IQLSGYTAGEKRQIAER 510


>gi|194386052|dbj|BAG59590.1| unnamed protein product [Homo sapiens]
          Length = 856

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E G+NF S  GP
Sbjct: 618 VLLAGPPGCGKTLLAKAVANESGLNFISVKGP 649


>gi|221057948|ref|XP_002261482.1| cell division cycle protein 48 homologue [Plasmodium knowlesi
           strain H]
 gi|194247487|emb|CAQ40887.1| cell division cycle protein 48 homologue,putative [Plasmodium
           knowlesi strain H]
          Length = 822

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ VA E   NF S  GP
Sbjct: 517 VLFYGPPGCGKTLLAKAVASECSANFVSIKGP 548



 Score = 40.0 bits (92), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTN-LEDRD-----V 108
           VL  GPPG GKT +A+ VA E G  F   +GP V++K AG+  A L    E+ +     +
Sbjct: 244 VLLYGPPGSGKTCIARAVANETGAFFFLINGPEVMSKMAGEAEANLRRAFEEAEKNSPAI 303

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 304 IFIDEIDSIA 313


>gi|167566373|ref|ZP_02359289.1| cell division control protein 48 ATPase of AAA family CDC48
           subfamily [Burkholderia oklahomensis EO147]
 gi|167573485|ref|ZP_02366359.1| cell division control protein 48 ATPase of AAA family CDC48
           subfamily [Burkholderia oklahomensis C6786]
          Length = 713

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 21/41 (51%), Positives = 25/41 (60%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +A A+    +L VGPPG GKT LA+  A E GVNF    GP
Sbjct: 484 RAGAKPSKGILLVGPPGCGKTWLAKAAANECGVNFIPVKGP 524



 Score = 37.7 bits (86), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 23/39 (58%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +A   VL  GPPG GKT +A+ +A E    F + SGP +
Sbjct: 215 DAPKGVLLYGPPGCGKTLIARAIAHECDATFFALSGPEV 253


>gi|156843387|ref|XP_001644761.1| hypothetical protein Kpol_1020p9 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156115411|gb|EDO16903.1| hypothetical protein Kpol_1020p9 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 812

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           VLF GPPG GKT LA+ VA E+  NF S  GP +     G+  + + ++ D+       V
Sbjct: 516 VLFYGPPGTGKTLLAKAVATEVSANFISVKGPELLSMWYGESESNIRDIFDKARAAAPTV 575

Query: 109 LFIDEIHRLS 118
           +F+DE+  ++
Sbjct: 576 VFLDELDSIA 585



 Score = 39.3 bits (90), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTN-LEDRD-----V 108
           VL  GPPG GKT +A+ VA E G  F   +GP V++K AG+  + L    E+ +     +
Sbjct: 243 VLMYGPPGTGKTLMARAVANETGAFFFLINGPEVMSKMAGESESNLRKAFEEAEKNAPAI 302

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 303 IFIDEIDSIA 312


>gi|157126628|ref|XP_001654680.1| spermatogenesis associated factor [Aedes aegypti]
 gi|108873203|gb|EAT37428.1| spermatogenesis associated factor [Aedes aegypti]
          Length = 803

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 511 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARSASPCV 570

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 571 LFFDELDSIA 580



 Score = 37.0 bits (84), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLEDRD--V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I          +L       E +   +
Sbjct: 238 ILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKKSPAI 297

Query: 109 LFIDEI 114
           +FIDE+
Sbjct: 298 IFIDEL 303


>gi|45643123|ref|NP_002524.2| nuclear valosin-containing protein-like isoform 1 [Homo sapiens]
 gi|32699415|sp|O15381|NVL_HUMAN RecName: Full=Nuclear valosin-containing protein-like; Short=NVLp;
           Short=Nuclear VCP-like protein
 gi|2406565|gb|AAB70457.1| nuclear VCP-like protein NVLp.2 [Homo sapiens]
 gi|119590120|gb|EAW69714.1| nuclear VCP-like, isoform CRA_a [Homo sapiens]
          Length = 856

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E G+NF S  GP
Sbjct: 618 VLLAGPPGCGKTLLAKAVANESGLNFISVKGP 649


>gi|116205431|ref|XP_001228526.1| hypothetical protein CHGG_10599 [Chaetomium globosum CBS 148.51]
 gi|88176727|gb|EAQ84195.1| hypothetical protein CHGG_10599 [Chaetomium globosum CBS 148.51]
          Length = 587

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 71/152 (46%), Gaps = 18/152 (11%)

Query: 22  LRPRTLEEFTGQVEACSN--LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +RP TL+   GQ     N  L+  IE+ +     +  ++  G  G GKTT+A+ +AR +G
Sbjct: 165 MRPDTLDHVFGQDLVGPNGVLRSLIESDR-----VPSMILWGGSGTGKTTIARCIARRVG 219

Query: 80  VNF--RSTSGPVIAKAGDLAALLTN----LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             F   + +   +A+   L A   N       R ++F DEIHR +   +++    +E   
Sbjct: 220 CRFIELNATSTGVAECKKLFAEAANELGLTGRRTIIFCDEIHRFNKGQQDVFLKPVEAGT 279

Query: 134 LDLM--VGEGPSARSVKINLSR---FTLIAAT 160
           + L+    E PS R     LSR   FTL + T
Sbjct: 280 ITLIGATTENPSFRVQAALLSRCRTFTLQSLT 311


>gi|156548829|ref|XP_001605497.1| PREDICTED: similar to ENSANGP00000022801 [Nasonia vitripennis]
          Length = 833

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 544 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDVFDKARSAAPCV 603

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 604 LFFDELDSIA 613



 Score = 37.0 bits (84), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 271 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAI 330

Query: 109 LFIDEI 114
           +FIDE+
Sbjct: 331 IFIDEL 336


>gi|119719589|ref|YP_920084.1| AAA family ATPase, CDC48 subfamily protein [Thermofilum pendens Hrk
           5]
 gi|119524709|gb|ABL78081.1| AAA family ATPase, CDC48 subfamily [Thermofilum pendens Hrk 5]
          Length = 718

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 53/118 (44%), Gaps = 17/118 (14%)

Query: 24  PRTLEEFTGQVE-ACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVV 74
           PR   E  G +E A   ++  +E      E   H        VLF GPPG GKT LA+ V
Sbjct: 175 PRITYEDIGDLEEAKQKIREMVELPLRHPELFKHLGIEPPKGVLFYGPPGTGKTLLAKAV 234

Query: 75  ARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DVLFIDEIHRLSIIVEEI 124
           A E G  F + +GP I     G+    L  + +        ++FIDEI  ++   EE+
Sbjct: 235 ANETGAYFIAINGPEIMSKFYGESEQRLREIFEEATKNAPAIIFIDEIDAIAPKREEV 292



 Score = 38.1 bits (87), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 20/34 (58%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT LA+ VA E   NF    GP I
Sbjct: 490 ILLYGPPGTGKTLLAKAVATESEANFIGVKGPEI 523


>gi|91786827|ref|YP_547779.1| ATP-dependent protease La [Polaromonas sp. JS666]
 gi|91696052|gb|ABE42881.1| ATP-dependent protease La [Polaromonas sp. JS666]
          Length = 792

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 70/162 (43%), Gaps = 32/162 (19%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           + FVGPPG+GKT+L Q +AR LG  F R + G V  +A              G +   L 
Sbjct: 360 LCFVGPPGVGKTSLGQSIARALGRPFVRMSLGGVHDEAEIRGHRRTYIGAMPGIIVQSLR 419

Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLS 152
               R  V+ +DE+ +LS   +        E+L P       D  +G       +  +LS
Sbjct: 420 KAGARHCVMMLDEVDKLSPSAQGDPSAALLEVLDPEQNATFRDNYLG-------LPFDLS 472

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           R   IA    +  +  P++DR  + I L  Y  E+   I QR
Sbjct: 473 RVVFIATANVIDQVPAPMRDRMEV-IDLPGYTQEEKLQIAQR 513


>gi|322709309|gb|EFZ00885.1| cell division control protein Cdc48 [Metarhizium anisopliae ARSEF
           23]
          Length = 818

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ VA E   NF S  GP
Sbjct: 530 VLFYGPPGTGKTMLAKAVANECAANFISVKGP 561



 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           VL  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 256 VLLYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 315

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 316 IFIDEIDSIA 325


>gi|303388207|ref|XP_003072338.1| Cdc48-like AAA ATPase [Encephalitozoon intestinalis ATCC 50506]
 gi|303301477|gb|ADM10978.1| Cdc48-like AAA ATPase [Encephalitozoon intestinalis ATCC 50506]
          Length = 780

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ VA E   NF S  GP +     G+  + + +L  R       V
Sbjct: 518 VLFYGPPGCGKTLLAKAVATECKANFISIKGPELLSMWVGESESNIRDLFARARGAAPCV 577

Query: 109 LFIDEIHRLS 118
           LF DEI  ++
Sbjct: 578 LFFDEIDSIA 587



 Score = 35.8 bits (81), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ +A E G      +GP I    AG+  + L    E+ +     +
Sbjct: 245 ILLYGPPGTGKTLIARAIANETGAFLFLINGPEIMSKMAGESESNLRKAFEEAEKNSPSI 304

Query: 109 LFIDEIHRLS 118
           +FIDEI  L+
Sbjct: 305 IFIDEIDALA 314


>gi|302308700|ref|NP_985705.2| AFR158Wp [Ashbya gossypii ATCC 10895]
 gi|299790753|gb|AAS53529.2| AFR158Wp [Ashbya gossypii ATCC 10895]
          Length = 832

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ VA E+  NF S  GP
Sbjct: 525 VLFYGPPGTGKTLLAKAVATEVSANFISVKGP 556



 Score = 38.9 bits (89), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTN-LEDRD-----V 108
           VL  GPPG GKT +A+ VA E G  F   +GP V++K AG+  + L    E+ +     +
Sbjct: 252 VLMYGPPGTGKTLMARAVANETGAFFFLINGPEVMSKMAGESESNLRKAFEEAEKNAPAI 311

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 312 IFIDEIDSIA 321


>gi|259483400|tpe|CBF78760.1| TPA: Cell division control protein 48
           [Source:UniProtKB/Swiss-Prot;Acc:Q5AWS6] [Aspergillus
           nidulans FGSC A4]
          Length = 814

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ VA E   NF S  GP
Sbjct: 527 VLFYGPPGTGKTMLAKAVANECAANFISVKGP 558



 Score = 38.1 bits (87), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 253 ILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 312

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 313 IFIDEIDSIA 322


>gi|281411727|ref|YP_003345806.1| Appr-1-p processing domain protein [Thermotoga naphthophila RKU-10]
 gi|281372830|gb|ADA66392.1| Appr-1-p processing domain protein [Thermotoga naphthophila RKU-10]
          Length = 599

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 61/231 (26%), Positives = 90/231 (38%), Gaps = 33/231 (14%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG- 79
           LLRP+  E+F GQ     +  +     K        +L+ GPPG GKT++  ++ R    
Sbjct: 11  LLRPKDFEDFVGQDHIFGDKGILRRTLKT-GNMFSSILY-GPPGSGKTSVFSLLKRYFNG 68

Query: 80  --VNFRSTSGPV--IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME--DFQ 133
             V   ST   V  I         L     + +LF+DEIHRL+   + +L   +E  D  
Sbjct: 69  EVVYLSSTVHGVSEIKNVLKRGEQLRKYGKKLLLFLDEIHRLNKNQQMVLVSHVERGDIV 128

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           L     E PS   V   LSR  +        L    L D             EDL  I++
Sbjct: 129 LVATTTENPSFAIVPALLSRCRI--------LYFKKLSD-------------EDLMKILK 167

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +  ++  L + + A   I   S G  R   +LL  +    +    K +T E
Sbjct: 168 KATRVLKLDLEETAEKAIVKHSEGDAR---KLLNTLEIVYQAFKNKKVTLE 215


>gi|149246888|ref|XP_001527869.1| cell division control protein 48 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146447823|gb|EDK42211.1| cell division control protein 48 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 839

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ VA E+  NF S  GP
Sbjct: 525 VLFFGPPGTGKTLLAKAVATEVSANFISVKGP 556



 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 252 ILMYGPPGTGKTIMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPSI 311

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 312 IFIDEIDSIA 321


>gi|111219719|ref|YP_710513.1| putative sporulation protein [Frankia alni ACN14a]
 gi|111147251|emb|CAJ58901.1| putative sporulation protein (partial match) [Frankia alni ACN14a]
          Length = 1222

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 70/165 (42%), Gaps = 33/165 (20%)

Query: 56   HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI-AKAGDL-AALLTNLEDR------- 106
            H+LF+GPPG GKTT+A++V          + G V+  K  DL A  L   E +       
Sbjct: 1003 HLLFLGPPGTGKTTVARLVGEMFAALGLLSKGHVVEVKREDLVAGYLGQTEQKTSDAIAK 1062

Query: 107  ---DVLFIDEIHRLSIIVEE--------ILYPAMEDFQLDLMVGEGPSARSVKINLSRFT 155
                VLFIDE + L+    +         L PAME+ +  L+V       S++  L+   
Sbjct: 1063 AIGGVLFIDEAYALARGGPQDFGREAINTLVPAMENLRGRLVVIAAGYPGSMREFLA--- 1119

Query: 156  LIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
                      +   L  RFG  I    YE  DL  I++R A   G
Sbjct: 1120 ----------VNEGLPSRFGETIEFPDYEPNDLVEILERMAGAAG 1154


>gi|91086235|ref|XP_966692.1| PREDICTED: similar to transitional endoplasmic reticulum ATPase
           TER94 isoform 1 [Tribolium castaneum]
 gi|270011017|gb|EFA07465.1| transitional endoplasmic reticulum ATPase TER94 [Tribolium
           castaneum]
          Length = 803

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 512 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARSAAPCV 571

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 572 LFFDELDSIA 581



 Score = 38.5 bits (88), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ D     +
Sbjct: 239 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAI 298

Query: 109 LFIDEIHRLS 118
           +FIDE+  ++
Sbjct: 299 IFIDELDAIA 308


>gi|82538797|ref|XP_723826.1| cell division cycle protein 48 [Plasmodium yoelii yoelii str.
           17XNL]
 gi|23478257|gb|EAA15391.1| cell division cycle protein 48 homolog [Plasmodium yoelii yoelii]
          Length = 815

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ VA E   NF S  GP
Sbjct: 515 VLFYGPPGCGKTLLAKAVASECSANFVSIKGP 546



 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTN-LEDRD-----V 108
           VL  GPPG GKT +A+ VA E G  F   +GP V++K AG+  A L    E+ +     +
Sbjct: 242 VLLYGPPGSGKTCIARAVANETGAFFFLINGPEVMSKMAGEAEANLRRAFEEAEKNSPAI 301

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 302 IFIDEIDSIA 311


>gi|332031336|gb|EGI70849.1| Transitional endoplasmic reticulum ATPase TER94 [Acromyrmex
           echinatior]
          Length = 832

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 543 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDVFDKARSAAPCV 602

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 603 LFFDELDSIA 612



 Score = 37.0 bits (84), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT +A+ VA E G  F   +GP I
Sbjct: 270 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 303


>gi|302816419|ref|XP_002989888.1| hypothetical protein SELMODRAFT_269585 [Selaginella moellendorffii]
 gi|300142199|gb|EFJ08901.1| hypothetical protein SELMODRAFT_269585 [Selaginella moellendorffii]
          Length = 805

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 520 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDVFDKARQSAPCV 579

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 580 LFFDELDSIA 589



 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 247 ILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 306

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 307 IFIDEIDSIA 316


>gi|60735077|dbj|BAD91024.1| valosin containing protein-1 [Eisenia fetida]
 gi|147225256|dbj|BAF62455.1| valosine containing peptide-1 [Eisenia fetida]
          Length = 808

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 512 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDIFDKARSAAPCV 571

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 572 LFFDELDSIA 581



 Score = 37.0 bits (84), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 239 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 298

Query: 109 LFIDEI 114
           +FIDE+
Sbjct: 299 IFIDEL 304


>gi|39940094|ref|XP_359584.1| cell division control protein Cdc48 [Magnaporthe oryzae 70-15]
 gi|145010540|gb|EDJ95196.1| cell division control protein Cdc48 [Magnaporthe oryzae 70-15]
          Length = 820

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ VA E   NF S  GP
Sbjct: 533 VLFYGPPGTGKTMLAKAVANECAANFISVKGP 564



 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           VL  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 259 VLLYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 318

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 319 IFIDEIDSIA 328


>gi|296808211|ref|XP_002844444.1| DNA-dependent ATPase MGS1 [Arthroderma otae CBS 113480]
 gi|238843927|gb|EEQ33589.1| DNA-dependent ATPase MGS1 [Arthroderma otae CBS 113480]
          Length = 541

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 70/153 (45%), Gaps = 28/153 (18%)

Query: 22  LRPRTLEEFTGQVEACSN--LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +RP+TL+E  GQ     N  L+  IE         D V     P  GKTT+A+V+A  +G
Sbjct: 144 MRPQTLDEVCGQELVGKNGVLRGLIER--------DRV-----PSTGKTTVARVIANMVG 190

Query: 80  VNF---RSTSGPVIAKAGDLAALLTN----LEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
             F    STS  V A+   L A   N       + ++F DEIHR S   +++    +E  
Sbjct: 191 SRFVEINSTSSGV-AECKKLFAEARNELSLTGRKTIIFCDEIHRFSKAQQDVFLGPVESG 249

Query: 133 QLDLM--VGEGPSARSVKINLSR---FTLIAAT 160
           Q+ L+    E PS +     LSR   FTL   T
Sbjct: 250 QVTLIGATTENPSFKVQNALLSRCRTFTLAKLT 282


>gi|242761705|ref|XP_002340232.1| cell division control protein Cdc48 [Talaromyces stipitatus ATCC
           10500]
 gi|218723428|gb|EED22845.1| cell division control protein Cdc48 [Talaromyces stipitatus ATCC
           10500]
          Length = 822

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ VA E   NF S  GP
Sbjct: 533 VLFYGPPGTGKTMLAKAVANECSANFISVKGP 564



 Score = 38.1 bits (87), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 259 ILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 318

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 319 IFIDEIDSIA 328


>gi|209880048|ref|XP_002141464.1| transitional endoplasmic reticulum ATPase protein [Cryptosporidium
           muris RN66]
 gi|209557070|gb|EEA07115.1| transitional endoplasmic reticulum ATPase protein, putative
           [Cryptosporidium muris RN66]
          Length = 802

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ VA E   NF S  GP
Sbjct: 520 VLFYGPPGCGKTLLAKAVASECSANFISVKGP 551



 Score = 39.3 bits (90), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-----AGDLAALLTNLEDRD--V 108
           VL  GPPG GKT +A+ VA E G  F   +GP V++K      G+L       E     +
Sbjct: 247 VLLYGPPGSGKTLIARAVANETGAFFFLINGPEVMSKMAGEAEGNLRRAFEEAEKNSPAI 306

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 307 IFIDEIDSIA 316


>gi|168034023|ref|XP_001769513.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162679224|gb|EDQ65674.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 816

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 524 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDVFDKARQSAPCV 583

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 584 LFFDELDSIA 593



 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 251 ILLFGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 310

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 311 IFIDEIDSIA 320


>gi|328783535|ref|XP_392892.3| PREDICTED: transitional endoplasmic reticulum ATPase TER94 isoform
           1 [Apis mellifera]
          Length = 811

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 511 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDVFDKARAAAPCV 570

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 571 LFFDELDSIA 580



 Score = 37.0 bits (84), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 238 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAI 297

Query: 109 LFIDEI 114
           +FIDE+
Sbjct: 298 IFIDEL 303


>gi|326561726|gb|EGE12061.1| recombination factor protein RarA [Moraxella catarrhalis 7169]
 gi|326569052|gb|EGE19121.1| recombination factor protein RarA [Moraxella catarrhalis BC1]
          Length = 412

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 64/138 (46%), Gaps = 9/138 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP TL+   GQ    S           R   L  ++  G  G+GKTTLA ++A  +G  
Sbjct: 8   MRPTTLDAVIGQTHLLSEGAPIFNIV--RQGFLPSLILHGSAGIGKTTLAMLLADAVGRP 65

Query: 82  FRSTSGPVIAKAGDLAALLTN----LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           FR  S  V +   +L  +L +      +  V+F+DEIHR +   ++ L  A+E  ++ L+
Sbjct: 66  FRPLSA-VSSGVKELREVLRSDDGLFHEPPVVFVDEIHRFNKAQQDALLQAVETGEITLI 124

Query: 138 --VGEGPSARSVKINLSR 153
               E PS       LSR
Sbjct: 125 GATTENPSFSVNNALLSR 142


>gi|322699632|gb|EFY91392.1| cell division control protein Cdc48 [Metarhizium acridum CQMa 102]
          Length = 818

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ VA E   NF S  GP
Sbjct: 530 VLFYGPPGTGKTMLAKAVANECAANFISVKGP 561



 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           VL  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 256 VLLYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 315

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 316 IFIDEIDSIA 325


>gi|270003538|gb|EEZ99985.1| hypothetical protein TcasGA2_TC002784 [Tribolium castaneum]
          Length = 876

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ +A E G+NF S  GP
Sbjct: 628 VLLCGPPGCGKTLLAKAMANEAGINFISVKGP 659



 Score = 37.4 bits (85), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 8/69 (11%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDRD------VL 109
           L  GPPG GKT LA  +A E+GV     + P  V   +G+    +  L +R       +L
Sbjct: 246 LLHGPPGCGKTLLANAIAGEIGVPLLKVAAPELVAGVSGESEERIRELFERAIFSTPCIL 305

Query: 110 FIDEIHRLS 118
           FIDEI  ++
Sbjct: 306 FIDEIDAIT 314


>gi|168031055|ref|XP_001768037.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162680675|gb|EDQ67109.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 812

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 518 VLFYGPPGCGKTMLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARGSAPCV 577

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 578 LFFDELDSIA 587



 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 245 ILLFGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 304

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 305 IFIDEIDSIA 314


>gi|168037127|ref|XP_001771056.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162677589|gb|EDQ64057.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 820

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 530 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDVFDKARQSAPCV 589

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 590 LFFDELDSIA 599



 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 257 ILLFGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 316

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 317 IFIDEIDSIA 326


>gi|229582087|ref|YP_002840486.1| replication factor C large subunit [Sulfolobus islandicus
          Y.N.15.51]
 gi|259585461|sp|C3NHF4|RFCL_SULIN RecName: Full=Replication factor C large subunit; Short=RFC large
          subunit; AltName: Full=Clamp loader large subunit
 gi|228012803|gb|ACP48564.1| AAA ATPase central domain protein [Sulfolobus islandicus
          Y.N.15.51]
          Length = 405

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 37/61 (60%), Gaps = 6/61 (9%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEA---AKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
          RPR+L++   Q  A   L+ +IE+    K  A+A   VL  GPPG+GKTTLA+ VA +  
Sbjct: 9  RPRSLKDVENQDGAKKELQEWIESWLNGKPNAKA---VLLHGPPGVGKTTLAEAVAHDYN 65

Query: 80 V 80
          +
Sbjct: 66 L 66


>gi|156101027|ref|XP_001616207.1| cell division cycle protein 48 homologue [Plasmodium vivax SaI-1]
 gi|148805081|gb|EDL46480.1| cell division cycle protein 48 homologue, putative [Plasmodium
           vivax]
          Length = 822

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ VA E   NF S  GP
Sbjct: 517 VLFYGPPGCGKTLLAKAVASECSANFVSIKGP 548



 Score = 40.0 bits (92), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTN-LEDRD-----V 108
           VL  GPPG GKT +A+ VA E G  F   +GP V++K AG+  A L    E+ +     +
Sbjct: 244 VLLYGPPGSGKTCIARAVANETGAFFFLINGPEVMSKMAGEAEANLRRAFEEAEKNSPAI 303

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 304 IFIDEIDSIA 313


>gi|6320077|ref|NP_010157.1| Cdc48p [Saccharomyces cerevisiae S288c]
 gi|1705679|sp|P25694|CDC48_YEAST RecName: Full=Cell division control protein 48
 gi|1431189|emb|CAA98694.1| CDC48 [Saccharomyces cerevisiae]
 gi|1449400|emb|CAA40276.1| CDC48p [Saccharomyces cerevisiae]
 gi|285810910|tpg|DAA11734.1| TPA: Cdc48p [Saccharomyces cerevisiae S288c]
          Length = 835

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ VA E+  NF S  GP
Sbjct: 524 VLFYGPPGTGKTLLAKAVATEVSANFISVKGP 555



 Score = 39.3 bits (90), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTN-LEDRD-----V 108
           VL  GPPG GKT +A+ VA E G  F   +GP V++K AG+  + L    E+ +     +
Sbjct: 251 VLMYGPPGTGKTLMARAVANETGAFFFLINGPEVMSKMAGESESNLRKAFEEAEKNAPAI 310

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 311 IFIDEIDSIA 320


>gi|67900534|ref|XP_680523.1| hypothetical protein AN7254.2 [Aspergillus nidulans FGSC A4]
 gi|74680687|sp|Q5AWS6|CDC48_EMENI RecName: Full=Cell division control protein 48
 gi|40741970|gb|EAA61160.1| hypothetical protein AN7254.2 [Aspergillus nidulans FGSC A4]
          Length = 827

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ VA E   NF S  GP
Sbjct: 540 VLFYGPPGTGKTMLAKAVANECAANFISVKGP 571



 Score = 38.1 bits (87), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 266 ILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 325

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 326 IFIDEIDSIA 335


>gi|295664474|ref|XP_002792789.1| cell division cycle protein [Paracoccidioides brasiliensis Pb01]
 gi|226278903|gb|EEH34469.1| cell division cycle protein [Paracoccidioides brasiliensis Pb01]
          Length = 820

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ VA E   NF S  GP
Sbjct: 531 VLFYGPPGTGKTLLAKAVANECAANFISVKGP 562



 Score = 38.1 bits (87), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 257 ILMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 316

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 317 IFIDEIDSIA 326


>gi|225684527|gb|EEH22811.1| cell division cycle protein [Paracoccidioides brasiliensis Pb03]
          Length = 820

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ VA E   NF S  GP
Sbjct: 531 VLFYGPPGTGKTLLAKAVANECAANFISVKGP 562



 Score = 38.1 bits (87), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 257 ILMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 316

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 317 IFIDEIDSIA 326


>gi|168058314|ref|XP_001781154.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162667391|gb|EDQ54022.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 815

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 524 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDVFDKARQSAPCV 583

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 584 LFFDELDSIA 593



 Score = 37.7 bits (86), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 251 ILLFGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 310

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 311 IFIDEIDSIA 320


>gi|14601365|ref|NP_147901.1| cell division protein CDC48 [Aeropyrum pernix K1]
 gi|5105048|dbj|BAA80362.1| cell division control protein 48, AAA family [Aeropyrum pernix K1]
          Length = 726

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 16/115 (13%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
           T E+     EA   ++  +E      E   H        +L  GPPG GKT LA+ +A E
Sbjct: 182 TWEDIGDLEEAKERIREIVELPMKHPEIFKHLGIEPPKGILLYGPPGTGKTLLAKALANE 241

Query: 78  LGVNFRSTSGPVIAKA--GD----LAALLTNLEDR--DVLFIDEIHRLSIIVEEI 124
           +G  F S +GP I     G+    L  +    E+    ++FIDEI  ++   EE+
Sbjct: 242 IGAYFISINGPEIMSKYYGESEQRLREIFKEAEENAPSIIFIDEIDAIAPKREEV 296



 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 20/34 (58%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL  GPPG GKT LA+ VA E G NF +  GP I
Sbjct: 496 VLLFGPPGTGKTLLAKAVATESGANFIAVRGPEI 529


>gi|163846381|ref|YP_001634425.1| ATP-dependent protease La [Chloroflexus aurantiacus J-10-fl]
 gi|222524147|ref|YP_002568618.1| ATP-dependent protease La [Chloroflexus sp. Y-400-fl]
 gi|302425041|sp|A9WGB5|LON_CHLAA RecName: Full=Lon protease; AltName: Full=ATP-dependent protease La
 gi|163667670|gb|ABY34036.1| ATP-dependent protease La [Chloroflexus aurantiacus J-10-fl]
 gi|222448026|gb|ACM52292.1| ATP-dependent protease La [Chloroflexus sp. Y-400-fl]
          Length = 827

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 101/244 (41%), Gaps = 51/244 (20%)

Query: 59  FVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLTNL 103
           FVGPPG+GKT+L Q +AR LG +F R + G V  +A              G +   L   
Sbjct: 383 FVGPPGVGKTSLGQSIARALGRSFVRMSLGGVRDEAELRGFRRTYIGSQPGRIIQELRRA 442

Query: 104 EDRD-VLFIDEIHRLSI--------IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRF 154
              D V+ +DEI +L I         + E+L P       D  +       ++  +LSR 
Sbjct: 443 GTADPVILLDEIDKLGIDYRGDPAAALLEVLDPEQNHTFTDHYL-------NLPFDLSRV 495

Query: 155 TLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT------IVQRGAKLTGLAVTDEAA 208
             +A       +   L+DR  + I L+ Y IED K       +V R  +  GL   +   
Sbjct: 496 LFLATANTWDTVPPALRDRMEV-IELSGY-IEDEKVQIAQIHLVPRQLRANGLRPEEAVV 553

Query: 209 CEIAMRS-----------RGTPRIAGRLLRRV-RDFAEVAHAKTITREIADAALLRLAID 256
            E A+R            R   R  G +LR+V R  +E       T  + DAA +R A+ 
Sbjct: 554 TEDAIRCIINEYTREAGVRNLERSIGAVLRKVARRLSEGEIDPANTPFVVDAAFVRAALG 613

Query: 257 KMGF 260
           +  F
Sbjct: 614 RPRF 617


>gi|67613096|ref|XP_667275.1| cell division cycle protein 48 [Cryptosporidium hominis TU502]
 gi|54658389|gb|EAL37040.1| cell division cycle protein 48 [Cryptosporidium hominis]
          Length = 814

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ VA E   NF S  GP
Sbjct: 528 VLFYGPPGCGKTLLAKAVASECSANFISVKGP 559



 Score = 39.7 bits (91), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-----AGDLAALLTNLEDRD--V 108
           VL  GPPG GKT +A+ VA E G  F   +GP V++K      G+L       E     +
Sbjct: 255 VLLYGPPGSGKTLIAKAVANETGAFFFLINGPEVMSKMAGEAEGNLRRAFEEAEKNSPAI 314

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 315 IFIDEIDSIA 324


>gi|332251957|ref|XP_003275118.1| PREDICTED: nuclear valosin-containing protein isoform 2 [Nomascus
           leucogenys]
          Length = 749

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E G+NF S  GP
Sbjct: 511 VLLAGPPGCGKTLLAKAVANESGLNFISVKGP 542


>gi|322801676|gb|EFZ22299.1| hypothetical protein SINV_06607 [Solenopsis invicta]
          Length = 793

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 504 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDVFDKARSAAPCV 563

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 564 LFFDELDSIA 573



 Score = 37.0 bits (84), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT +A+ VA E G  F   +GP I
Sbjct: 231 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 264


>gi|320580528|gb|EFW94750.1| AAA family ATPase [Pichia angusta DL-1]
          Length = 832

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DV 108
           VLF GPPG GKT LA+ VA E+  NF S  GP +     G+  + + ++ D+       V
Sbjct: 524 VLFFGPPGTGKTLLAKAVATEVSANFISVKGPELLSMWYGESESNIRDIFDKARAAAPTV 583

Query: 109 LFIDEIHRLS 118
           +F+DE+  ++
Sbjct: 584 VFLDELDSIA 593



 Score = 38.5 bits (88), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALL------TNLEDRDV 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L             +
Sbjct: 251 ILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPSI 310

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 311 IFIDEIDSIA 320


>gi|288927650|ref|ZP_06421497.1| cell division protein FtsH [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288330484|gb|EFC69068.1| cell division protein FtsH [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 667

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 108/261 (41%), Gaps = 45/261 (17%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ  A   ++  +E  K+  +  D         L VGPPG GKT LA+ VA E 
Sbjct: 193 TFKDVAGQEGAKQEVQEIVEFLKSPQKYTDLGGKIPKGALLVGPPGTGKTLLAKAVAGEA 252

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG       V   A  +  L    +++   ++FIDEI  +     +   P+M 
Sbjct: 253 GVPFFSMSGSDFVEMFVGVGASRVRDLFHQAKEKSPCIIFIDEIDAVGRARSK--NPSM- 309

Query: 131 DFQLDLMVGEGPSARSVKINL-----------SRFTLIAATTRVGLLTNPL--QDRFGIP 177
                     G   R   +N            S   ++AAT R  +L + L    RF   
Sbjct: 310 ---------GGNDERENTLNALLTEMDGFGTNSGVIILAATNRADMLDSALLRAGRFDRQ 360

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
           I ++  ++ + K I Q   +     V  ++  +I   SR TP  +G  +  V + A +  
Sbjct: 361 INVDLPDLPERKQIFQVHLR----PVKVDSTVDIDFLSRQTPGFSGADIANVCNEAALIA 416

Query: 238 AKTITREIADAALLRLAIDKM 258
           A+  ++ +     L  A+D++
Sbjct: 417 ARHNSKSVGKQDFLD-AVDRI 436


>gi|257387186|ref|YP_003176959.1| replication factor C small subunit [Halomicrobium mukohataei DSM
          12286]
 gi|257169493|gb|ACV47252.1| Replication factor C [Halomicrobium mukohataei DSM 12286]
          Length = 322

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 5/65 (7%)

Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
          +E+  I   RP+TL +  G       L+ +++        L H+LF GP G GKTT A  
Sbjct: 9  REEVWIEKYRPQTLSDVVGHETIVERLQSYVDRND-----LSHMLFAGPAGTGKTTSATA 63

Query: 74 VAREL 78
          +AREL
Sbjct: 64 IAREL 68


>gi|227500203|ref|ZP_03930272.1| ATP dependent protease ATP-binding subunit [Anaerococcus tetradius
           ATCC 35098]
 gi|227217725|gb|EEI83029.1| ATP dependent protease ATP-binding subunit [Anaerococcus tetradius
           ATCC 35098]
          Length = 404

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 29/131 (22%)

Query: 17  ADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEALD----------HVLFVG 61
            D+ L  P+ ++EF      GQ +A   L V +     R  + +          ++L +G
Sbjct: 56  GDVELSTPKEIKEFLDSYVIGQDDAKKTLSVAVYNHYKRINSNEEDSEIELQKSNILMLG 115

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTN--------------LEDRD 107
           P G GKT LAQ +AR+L V F       + +AG +   + N              L +R 
Sbjct: 116 PTGSGKTLLAQTLARKLNVPFAIADATSLTEAGYVGEDVENIILKLVQAADYDIELAERG 175

Query: 108 VLFIDEIHRLS 118
           ++++DEI +++
Sbjct: 176 IIYVDEIDKIT 186


>gi|226294184|gb|EEH49604.1| cell division control protein [Paracoccidioides brasiliensis Pb18]
          Length = 820

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ VA E   NF S  GP
Sbjct: 531 VLFYGPPGTGKTLLAKAVANECAANFISVKGP 562



 Score = 38.1 bits (87), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 257 ILMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 316

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 317 IFIDEIDSIA 326


>gi|225436524|ref|XP_002276976.1| PREDICTED: similar to Cell division cycle protein 48 homolog [Vitis
           vinifera]
          Length = 802

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 519 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTKWFGESEANVREIFDKARQSASCV 578

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 579 LFFDELDSIA 588



 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DV 108
           +L  GPPG GKT +A+ VA E G  F   +GP I         G+L       E     +
Sbjct: 246 ILLYGPPGSGKTLIAKAVANETGAFFFCINGPEIMSKLAGESEGNLRKAFEEAEKNAPSI 305

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 306 VFIDEIDSIA 315


>gi|194386940|dbj|BAG59836.1| unnamed protein product [Homo sapiens]
          Length = 667

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E G+NF S  GP
Sbjct: 429 VLLAGPPGCGKTLLAKAVANESGLNFISVKGP 460


>gi|160878536|ref|YP_001557504.1| ATP-dependent protease ATP-binding subunit [Clostridium
           phytofermentans ISDg]
 gi|189082493|sp|A9KSX1|CLPX_CLOPH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|160427202|gb|ABX40765.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           phytofermentans ISDg]
          Length = 433

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 66/136 (48%), Gaps = 28/136 (20%)

Query: 11  NVSQEDADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARA---EALD------H 56
           +V++  + I+LL+P+ ++EF      GQ EA   L V +     R    + LD      +
Sbjct: 54  DVAESASGINLLKPKEIKEFLDQYVIGQEEAKKVLSVSVYNHYKRVLSEKDLDVELQKSN 113

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRD-- 107
           +L +GP G GKT +AQ +A+ L V F       + +AG +   + N+        D D  
Sbjct: 114 ILMIGPTGSGKTYVAQTLAKILNVPFAIADATALTEAGYVGEDVENILLKIIQAADYDIE 173

Query: 108 -----VLFIDEIHRLS 118
                +++IDEI +++
Sbjct: 174 RAQYGIIYIDEIDKIT 189


>gi|116207434|ref|XP_001229526.1| hypothetical protein CHGG_03010 [Chaetomium globosum CBS 148.51]
 gi|88183607|gb|EAQ91075.1| hypothetical protein CHGG_03010 [Chaetomium globosum CBS 148.51]
          Length = 821

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ VA E   NF S  GP
Sbjct: 535 VLFYGPPGTGKTMLAKAVANECAANFISVKGP 566



 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           VL  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 261 VLLYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 320

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 321 IFIDEIDSIA 330


>gi|66361858|ref|XP_627893.1| CDC48 like AAA ATPase ortholog [Cryptosporidium parvum Iowa II]
 gi|46227655|gb|EAK88590.1| CDC48 like AAA ATPase ortholog [Cryptosporidium parvum Iowa II]
          Length = 820

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ VA E   NF S  GP
Sbjct: 534 VLFYGPPGCGKTLLAKAVASECSANFISVKGP 565



 Score = 39.7 bits (91), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-----AGDLAALLTNLEDRD--V 108
           VL  GPPG GKT +A+ VA E G  F   +GP V++K      G+L       E     +
Sbjct: 261 VLLYGPPGSGKTLIAKAVANETGAFFFLINGPEVMSKMAGEAEGNLRRAFEEAEKNSPAI 320

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 321 IFIDEIDSIA 330


>gi|309751686|gb|ADO81670.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Haemophilus
           influenzae R2866]
          Length = 411

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD--------LAALLTNLE--- 104
           ++L +GP G GKT LAQ +AR L V F       + +AG         L  LL N E   
Sbjct: 112 NILLIGPTGSGKTLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVLQKLLQNCEYDT 171

Query: 105 ---DRDVLFIDEIHRLS 118
              ++ +++IDEI ++S
Sbjct: 172 EKAEKGIIYIDEIDKIS 188


>gi|330805727|ref|XP_003290830.1| cell division cycle protein 48 [Dictyostelium purpureum]
 gi|325079040|gb|EGC32661.1| cell division cycle protein 48 [Dictyostelium purpureum]
          Length = 792

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  L D+       V
Sbjct: 512 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRELFDKARQAAPCV 571

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 572 LFFDELDSIA 581



 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 239 ILLYGPPGCGKTMIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 298

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 299 IFIDEIDSIA 308


>gi|312136661|ref|YP_004003998.1| replication factor c small subunit [Methanothermus fervidus DSM
          2088]
 gi|311224380|gb|ADP77236.1| replication factor C small subunit [Methanothermus fervidus DSM
          2088]
          Length = 318

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+ L++   Q    S LK ++E      + L ++LF GP G+GKTT+A  +ARE+
Sbjct: 10 RPKVLDDVVNQKHVVSRLKKYVEK-----KTLPNLLFAGPAGVGKTTVALALAREI 60


>gi|302770437|ref|XP_002968637.1| hypothetical protein SELMODRAFT_145748 [Selaginella moellendorffii]
 gi|300163142|gb|EFJ29753.1| hypothetical protein SELMODRAFT_145748 [Selaginella moellendorffii]
          Length = 809

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 524 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDVFDKARQSAPCV 583

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 584 LFFDELDSIA 593



 Score = 37.7 bits (86), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 251 ILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 310

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 311 IFIDEIDSIA 320


>gi|297461182|ref|XP_611864.5| PREDICTED: nuclear VCP-like [Bos taurus]
          Length = 917

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E G+NF S  GP
Sbjct: 679 VLLAGPPGCGKTLLAKAVANESGLNFISVKGP 710


>gi|261189835|ref|XP_002621328.1| cell division cycle protein 48 [Ajellomyces dermatitidis SLH14081]
 gi|239591564|gb|EEQ74145.1| cell division cycle protein 48 [Ajellomyces dermatitidis SLH14081]
 gi|239612906|gb|EEQ89893.1| cell division control protein Cdc48 [Ajellomyces dermatitidis ER-3]
 gi|327352078|gb|EGE80935.1| cell division cycle protein 48 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 822

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ VA E   NF S  GP
Sbjct: 532 VLFYGPPGTGKTLLAKAVANECAANFISVKGP 563



 Score = 38.1 bits (87), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 258 ILMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 317

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 318 IFIDEIDSIA 327


>gi|169829332|ref|YP_001699490.1| hypothetical protein Bsph_3886 [Lysinibacillus sphaericus C3-41]
 gi|168993820|gb|ACA41360.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
          Length = 420

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 63/258 (24%), Positives = 104/258 (40%), Gaps = 49/258 (18%)

Query: 22  LRPRTLEEFTGQVEACS-NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           +RP TL+E  G  +    N  ++      + E +  +L  G PG+GKT++A  +A    +
Sbjct: 1   MRPLTLDEIVGHQDFIGPNTALY---KMIQNEHVPSMLLYGEPGIGKTSIANAIAGSSQL 57

Query: 81  NFRSTSGPVIAKAGDLAALLTN--LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138
            F + +     K  D+  ++    +  + +LF+DEIHR + + ++ L P +E+       
Sbjct: 58  PFFALNATRAGKK-DVEDIVQEARISGKVLLFLDEIHRFNKLQQDTLLPHVEN------- 109

Query: 139 GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-------RFGIPIRLNFYEIEDLKTI 191
                            LI ATT      NP  D       R G   +L     E+L  +
Sbjct: 110 -------------GSIVLIGATTE-----NPYHDVNPAIRSRCGEIYQLKRLTKENLMEL 151

Query: 192 VQ-------RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           V+       RG       +TD     IA  + G  R A  LL  +   ++     TI  +
Sbjct: 152 VEKALADEKRGLGKYHFILTDSQIERIAEAANGDARKALTLLESIYYASDEVEGPTIAAD 211

Query: 245 -IADAALLRLAI--DKMG 259
            I D  + R+ +  DK G
Sbjct: 212 HIIDHLISRIGVYGDKKG 229


>gi|156848053|ref|XP_001646909.1| hypothetical protein Kpol_2000p15 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156117591|gb|EDO19051.1| hypothetical protein Kpol_2000p15 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 823

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ VA E+  NF S  GP
Sbjct: 523 VLFYGPPGTGKTLLAKAVATEVSANFISVKGP 554



 Score = 38.9 bits (89), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTN-LEDRD-----V 108
           VL  GPPG GKT +A+ VA E G  F   +GP V++K AG+  + L    E+ +     +
Sbjct: 250 VLMYGPPGTGKTLMARAVANETGAFFFLINGPEVMSKMAGESESNLRKAFEEAEKNAPAI 309

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 310 IFIDEIDSIA 319


>gi|91079282|ref|XP_972572.1| PREDICTED: similar to Nuclear valosin-containing protein-like
           (Nuclear VCP-like protein) (NVLp) [Tribolium castaneum]
          Length = 822

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ +A E G+NF S  GP
Sbjct: 574 VLLCGPPGCGKTLLAKAMANEAGINFISVKGP 605



 Score = 37.4 bits (85), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 8/65 (12%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDRD------VL 109
           L  GPPG GKT LA  +A E+GV     + P  V   +G+    +  L +R       +L
Sbjct: 246 LLHGPPGCGKTLLANAIAGEIGVPLLKVAAPELVAGVSGESEERIRELFERAIFSTPCIL 305

Query: 110 FIDEI 114
           FIDEI
Sbjct: 306 FIDEI 310


>gi|84997856|ref|XP_953649.1| metalloprotease/cell division cycle protein (FtsH ) [Theileria
           annulata]
 gi|65304646|emb|CAI72971.1| metalloprotease/cell division cycle protein (FtsH homologue),
           putative [Theileria annulata]
          Length = 805

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 23/32 (71%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L VGPPG GKT LA+ VA E G+ F  TSGP
Sbjct: 267 ILLVGPPGTGKTMLAKAVATETGIPFIYTSGP 298


>gi|297661889|ref|XP_002809450.1| PREDICTED: nuclear valosin-containing protein-like, partial [Pongo
           abelii]
          Length = 728

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E G+NF S  GP
Sbjct: 619 VLLAGPPGCGKTLLAKAVANESGLNFISVKGP 650


>gi|288918178|ref|ZP_06412534.1| AAA ATPase central domain protein [Frankia sp. EUN1f]
 gi|288350454|gb|EFC84675.1| AAA ATPase central domain protein [Frankia sp. EUN1f]
          Length = 1223

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 88/208 (42%), Gaps = 46/208 (22%)

Query: 25   RTLEEFTGQVEA---CSNLKVFIEAAKARAEA-------LDHVLFVGPPGLGKTTLAQVV 74
            R L   TG  E     S+L   + + +ARA+A         H++F GPPG GKTT+A++ 
Sbjct: 960  RRLHAMTGLAEVKREVSDLVDLLASVQARADAGLPAPAVSRHLVFAGPPGTGKTTVARLY 1019

Query: 75   ARELGVNFRSTSGPVIAKA---------GDLAALLTNLEDR---DVLFIDEIHRLSIIVE 122
               L       +G ++  A         G  AA  T + D     VLFIDE + LS   +
Sbjct: 1020 GELLAAMGVLRTGQLVEVARADLVGRYVGHTAAKTTEVFDSARGGVLFIDEAYALSARGD 1079

Query: 123  ---------EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP-LQD 172
                     + L   MED + D++V     A     ++ +F          L +N  L  
Sbjct: 1080 GADFGREAIDTLVKLMEDHRDDVVV----IAAGYTADMEQF----------LASNAGLAS 1125

Query: 173  RFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
            RF   IR + Y  ++L  I +  A+ +G
Sbjct: 1126 RFSHRIRFSSYSADELVAIFESLAQASG 1153



 Score = 40.0 bits (92), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 68/164 (41%), Gaps = 42/164 (25%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA-GDLAA---------LLTNLED 105
           HV+F GPPG GKTT+A++  + L       +G ++  A  DL A              E+
Sbjct: 720 HVVFAGPPGTGKTTVARLFGKILAALGVLETGQLVEVARADLVAEHVGGTAVRTTAKFEE 779

Query: 106 R--DVLFIDEIHRLSII---------VEEILYPAMEDFQLDLMV---GEGPSARSVKINL 151
               +LFIDE + L+             + L   MED + +++V   G  P  RS     
Sbjct: 780 AVGGILFIDEAYTLAPSDGSHDFGREAIDTLVKLMEDRRDEVVVIVAGYSPQMRSF---- 835

Query: 152 SRFTLIAATTRVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQR 194
                        L  NP LQ RF   I  + Y   +L TIV+R
Sbjct: 836 -------------LAANPGLQSRFSRTIEFDSYTSAELVTIVER 866


>gi|240274705|gb|EER38221.1| cell division cycle protein [Ajellomyces capsulatus H143]
          Length = 461

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ VA E   NF S  GP
Sbjct: 172 VLFYGPPGTGKTLLAKAVANECAANFISVKGP 203


>gi|260943992|ref|XP_002616294.1| cell division control protein 48 [Clavispora lusitaniae ATCC 42720]
 gi|238849943|gb|EEQ39407.1| cell division control protein 48 [Clavispora lusitaniae ATCC 42720]
          Length = 825

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ VA E+  NF S  GP
Sbjct: 523 VLFFGPPGTGKTLLAKAVATEVSANFISVKGP 554



 Score = 38.5 bits (88), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 250 ILMYGPPGTGKTIMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 309

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 310 IFIDEIDSIA 319


>gi|221102479|ref|XP_002155686.1| PREDICTED: similar to Transitional endoplasmic reticulum ATPase,
           partial [Hydra magnipapillata]
          Length = 428

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 138 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARMAAPCV 197

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 198 LFFDELDSIA 207


>gi|198418753|ref|XP_002130650.1| PREDICTED: similar to nuclear VCP-like [Ciona intestinalis]
          Length = 779

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ +A E G+NF S  GP
Sbjct: 535 VLLAGPPGCGKTLLAKAIANESGINFISVKGP 566


>gi|190347960|gb|EDK40330.2| cell division control protein 48 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 825

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DV 108
           VLF GPPG GKT LA+ VA E+  NF S  GP +     G+  + + ++ D+       V
Sbjct: 523 VLFFGPPGTGKTLLAKAVATEVSANFISVKGPELLSMWYGESESNIRDIFDKARAAAPTV 582

Query: 109 LFIDEIHRLS 118
           +F+DE+  ++
Sbjct: 583 VFLDELDSIA 592



 Score = 38.9 bits (89), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 250 ILMYGPPGTGKTVMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNAPSI 309

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 310 IFIDEIDSIA 319


>gi|147920787|ref|YP_685407.1| cell division cycle protein 48 [uncultured methanogenic archaeon
           RC-I]
 gi|110620803|emb|CAJ36081.1| cell division cycle protein 48 [uncultured methanogenic archaeon
           RC-I]
          Length = 743

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 51/115 (44%), Gaps = 16/115 (13%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
           T E+  G  E    ++  IE      E            VL  GPPG GKT LA+ VA E
Sbjct: 190 TYEDIGGLREEVQRVREMIELPMKHPELFQRLGIDPPKGVLLHGPPGTGKTLLAKAVANE 249

Query: 78  LGVNFRSTSGPVIAKA--GDLAALLTNL--EDRD----VLFIDEIHRLSIIVEEI 124
            G  F S +GP I     G+    L  +  + RD    ++FIDE+  ++   EE+
Sbjct: 250 CGAEFYSIAGPEIMSKYYGESEQRLREIFEQARDSAPSIIFIDELDSIAPKREEV 304


>gi|45643125|ref|NP_996671.1| nuclear valosin-containing protein-like isoform 2 [Homo sapiens]
 gi|2406580|gb|AAB70460.1| nuclear VCP-like protein NVLp.1 [Homo sapiens]
 gi|119590122|gb|EAW69716.1| nuclear VCP-like, isoform CRA_c [Homo sapiens]
          Length = 750

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E G+NF S  GP
Sbjct: 512 VLLAGPPGCGKTLLAKAVANESGLNFISVKGP 543


>gi|37519811|ref|NP_923188.1| cell division control protein CDC48-like protein [Gloeobacter
           violaceus PCC 7421]
 gi|35210802|dbj|BAC88183.1| gll0242 [Gloeobacter violaceus PCC 7421]
          Length = 574

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 52/121 (42%), Gaps = 33/121 (27%)

Query: 23  RPRT-LEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQV 73
           RP+  LE   G  E    LK  +E    + E L+         VL VGPPG GKT  A+ 
Sbjct: 50  RPQPYLEGVGGLGEVLVTLKELVELPLKKPEVLEQLGLEPVRGVLLVGPPGTGKTLTARA 109

Query: 74  VARELGVNFRSTSGP----------------VIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           +A +LGV F +  GP                + AKA  LA  L        LFIDEI  L
Sbjct: 110 LAEQLGVRFLAIIGPEMMGKYYGEAESRLRGLFAKAARLAPCL--------LFIDEIDGL 161

Query: 118 S 118
           +
Sbjct: 162 A 162



 Score = 38.1 bits (87), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 25/41 (60%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +A A+A   +L  GPPG GKT LA+ VA +   NF +  GP
Sbjct: 348 RAGAKAPRGILLYGPPGTGKTLLARAVASQARANFIAVKGP 388


>gi|307211146|gb|EFN87364.1| Transitional endoplasmic reticulum ATPase TER94 [Harpegnathos
           saltator]
          Length = 796

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 507 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDVFDKARSAAPCV 566

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 567 LFFDELDSIA 576



 Score = 37.0 bits (84), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT +A+ VA E G  F   +GP I
Sbjct: 239 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 272


>gi|307174120|gb|EFN64778.1| Transitional endoplasmic reticulum ATPase TER94 [Camponotus
           floridanus]
          Length = 801

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 512 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDVFDKARSAAPCV 571

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 572 LFFDELDSIA 581



 Score = 37.0 bits (84), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT +A+ VA E G  F   +GP I
Sbjct: 239 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 272


>gi|145628435|ref|ZP_01784236.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           22.1-21]
 gi|144980210|gb|EDJ89869.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           22.1-21]
          Length = 396

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD--------LAALLTNLE--- 104
           ++L +GP G GKT LAQ +AR L V F       + +AG         L  LL N E   
Sbjct: 112 NILLIGPTGSGKTLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVLQKLLQNCEYDT 171

Query: 105 ---DRDVLFIDEIHRLS 118
              ++ +++IDEI ++S
Sbjct: 172 EKAEKGIIYIDEIDKIS 188


>gi|145537570|ref|XP_001454496.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124422262|emb|CAK87099.1| unnamed protein product [Paramecium tetraurelia]
          Length = 817

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 8/71 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ VA E   NF S  GP +     G+  + +  + D+       V
Sbjct: 526 VLFYGPPGCGKTLLAKAVASECSANFISIKGPELLTMWFGESESNVREVFDKARQASPCV 585

Query: 109 LFIDEIHRLSI 119
           LF DE+  +++
Sbjct: 586 LFFDELDSIAV 596



 Score = 40.4 bits (93), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 8/76 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLEDRD--V 108
           VL  GPPG GKT +A+ VA E G  F   +GP I         G+L       E     +
Sbjct: 253 VLLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGEAEGNLRKAFEEAEKNSPAI 312

Query: 109 LFIDEIHRLSIIVEEI 124
           +FIDEI  ++   E++
Sbjct: 313 IFIDEIDSIAPKREKV 328


>gi|50427157|ref|XP_462191.1| DEHA2G14960p [Debaryomyces hansenii CBS767]
 gi|49657861|emb|CAG90683.1| DEHA2G14960p [Debaryomyces hansenii]
          Length = 831

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ VA E+  NF S  GP
Sbjct: 523 VLFYGPPGTGKTLLAKAVATEVSANFISVKGP 554



 Score = 38.9 bits (89), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALL------TNLEDRDV 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L             +
Sbjct: 250 ILMYGPPGTGKTVMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPSI 309

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 310 IFIDEIDSIA 319


>gi|50543016|ref|XP_499674.1| YALI0A02068p [Yarrowia lipolytica]
 gi|49645539|emb|CAG83597.1| YALI0A02068p [Yarrowia lipolytica]
          Length = 358

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 6/63 (9%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81
          RP TL++ TG     + LK  +   K       H+LF GPPG GKT+    VARE+ G +
Sbjct: 36 RPDTLDDVTGHEGVVTTLKKLLANKK-----FPHLLFYGPPGTGKTSTILAVAREIYGPS 90

Query: 82 FRS 84
          ++S
Sbjct: 91 YKS 93


>gi|114330973|ref|YP_747195.1| ATP-dependent protease La [Nitrosomonas eutropha C91]
 gi|114307987|gb|ABI59230.1| ATP-dependent protease La [Nitrosomonas eutropha C91]
          Length = 791

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 69/162 (42%), Gaps = 32/162 (19%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAKAGDLAALLT 101
           + FVGPPG+GKT+L Q +AR L   F   S                 V A  G++   L 
Sbjct: 357 LCFVGPPGVGKTSLGQSIARALQRPFVRVSLGGIHDEAEMRGHRRTYVGAMPGNIVQNLR 416

Query: 102 NLEDRD-VLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152
               R+ V+ +DEI ++        S  + EIL P       D  +G       V  +LS
Sbjct: 417 KAGARNCVMMLDEIDKMTASAHGDPSAALLEILDPEQNATFRDNYLG-------VPFDLS 469

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           R   IA    +  ++ P++DR  I I L  Y  E+   I QR
Sbjct: 470 RVVFIATANVIDQVSPPVRDRMEI-IDLPGYTPEEKLQIAQR 510


>gi|71034003|ref|XP_766643.1| cell division protein FtsH [Theileria parva strain Muguga]
 gi|68353600|gb|EAN34360.1| cell division protein FtsH, putative [Theileria parva]
          Length = 806

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 23/32 (71%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L VGPPG GKT LA+ VA E G+ F  TSGP
Sbjct: 267 ILLVGPPGTGKTMLAKAVATETGIPFIYTSGP 298


>gi|255729690|ref|XP_002549770.1| cell division control protein 48 [Candida tropicalis MYA-3404]
 gi|240132839|gb|EER32396.1| cell division control protein 48 [Candida tropicalis MYA-3404]
          Length = 826

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           VLF GPPG GKT LA+ VA E+  NF S  GP +     G+  + + ++ D+       V
Sbjct: 525 VLFFGPPGTGKTLLAKAVATEVSANFISVKGPELLSMWYGESESNIRDIFDKARAAAPTV 584

Query: 109 LFIDEIHRLS 118
           +F+DE+  ++
Sbjct: 585 VFLDELDSIA 594



 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALL------TNLEDRDV 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L             +
Sbjct: 252 ILMYGPPGTGKTIMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPSI 311

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 312 IFIDEIDSIA 321


>gi|151941877|gb|EDN60233.1| cell division cycle-related protein [Saccharomyces cerevisiae
           YJM789]
 gi|190405128|gb|EDV08395.1| cell division control protein 48 [Saccharomyces cerevisiae RM11-1a]
 gi|256274085|gb|EEU08996.1| Cdc48p [Saccharomyces cerevisiae JAY291]
 gi|259145118|emb|CAY78382.1| Cdc48p [Saccharomyces cerevisiae EC1118]
 gi|323349430|gb|EGA83654.1| Cdc48p [Saccharomyces cerevisiae Lalvin QA23]
 gi|323355818|gb|EGA87631.1| Cdc48p [Saccharomyces cerevisiae VL3]
          Length = 835

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ VA E+  NF S  GP
Sbjct: 524 VLFYGPPGTGKTLLAKAVATEVSANFISVKGP 555



 Score = 38.9 bits (89), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTN-LEDRD-----V 108
           VL  GPPG GKT +A+ VA E G  F   +GP V++K AG+  + L    E+ +     +
Sbjct: 251 VLMYGPPGTGKTLMARAVANETGAFFFLINGPEVMSKMAGESESNLRKAFEEAEKNAPAI 310

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 311 IFIDEIDSIA 320


>gi|309364944|emb|CAP23560.2| hypothetical protein CBG_03070 [Caenorhabditis briggsae AF16]
          Length = 865

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 517 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCV 576

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 577 LFFDELDSIA 586



 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-----AGDLAALLTNLEDRD--V 108
           +L  GPPG GKT +A+ VA E G  F   +GP V++K       +L       E     +
Sbjct: 247 ILLFGPPGTGKTLIARAVANETGSFFFLINGPEVMSKMSGESESNLRKAFEECEKNQPAI 306

Query: 109 LFIDEI 114
           LFIDEI
Sbjct: 307 LFIDEI 312


>gi|289621142|emb|CBI51925.1| unnamed protein product [Sordaria macrospora]
          Length = 824

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ VA E   NF S  GP
Sbjct: 535 VLFYGPPGTGKTMLAKAVANECAANFISVKGP 566



 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           VL  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 261 VLLYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 320

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 321 IFIDEIDSIA 330


>gi|242008814|ref|XP_002425193.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212508909|gb|EEB12455.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 804

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 512 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDVFDKARSAAPCV 571

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 572 LFFDELDSIA 581



 Score = 38.5 bits (88), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ D     +
Sbjct: 239 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAI 298

Query: 109 LFIDEI 114
           +FIDE+
Sbjct: 299 IFIDEL 304


>gi|126132366|ref|XP_001382708.1| Cell division control protein 48 [Scheffersomyces stipitis CBS
           6054]
 gi|126094533|gb|ABN64679.1| Cell division control protein 48 [Scheffersomyces stipitis CBS
           6054]
          Length = 829

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ VA E+  NF S  GP
Sbjct: 525 VLFFGPPGTGKTLLAKAVATEVSANFISVKGP 556



 Score = 38.5 bits (88), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALL------TNLEDRDV 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L             +
Sbjct: 252 ILMYGPPGTGKTIMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPSI 311

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 312 IFIDEIDSIA 321


>gi|109018127|ref|XP_001096523.1| PREDICTED: nuclear VCP-like isoform 3 [Macaca mulatta]
          Length = 750

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E G+NF S  GP
Sbjct: 512 VLLAGPPGCGKTLLAKAVANESGLNFISVKGP 543


>gi|84998232|ref|XP_953837.1| transitional endoplasmic reticulum ATPase (CDC48 ) [Theileria
           annulata]
 gi|65304834|emb|CAI73159.1| transitional endoplasmic reticulum ATPase (CDC48 homologue),
           putative [Theileria annulata]
          Length = 822

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ VA E   NF S  GP
Sbjct: 538 VLFYGPPGCGKTLLAKAVASECSANFISVKGP 569


>gi|303228652|ref|ZP_07315477.1| DNA polymerase III, subunit gamma and tau [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302516632|gb|EFL58549.1| DNA polymerase III, subunit gamma and tau [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 804

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 119/292 (40%), Gaps = 39/292 (13%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T  +  GQ +    L   I     R + + H  LF GP G GKT++A++ AR +   
Sbjct: 11  RPQTFTDVVGQHQVSDTLMRAI-----REDKVAHAYLFAGPRGTGKTSMAKIFARAINCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDE-----IHRLSIIVEEILYPAMED----F 132
              T  P       +   + + +  DVL ID      I  +  + E + +  +E     F
Sbjct: 66  HGPTDHP--CNECSVCKSILSGQSMDVLEIDAASNRGIDEIRALRESVKFMPVEGRKKVF 123

Query: 133 QLD---LMVGEGPSA--RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI-- 185
            +D   ++  E  +A  ++++        I ATT +  L   +  R     R  F  I  
Sbjct: 124 IIDEAHMLTNEAWNALLKTIEEPPDHVMFIFATTEIEKLPVTIVSRCQ---RYTFRRITS 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           +D+   +Q  A   G A+ D AA  IA+ + G  R A  +L +    A        + EI
Sbjct: 181 DDIAQRLQYVADKEGFALEDNAARLIAVHADGGLRDALSILDQCVGMA--------SGEI 232

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
             A +  L    +G    D     + A + G GP  ++ I   LSE RD  +
Sbjct: 233 TPAVVEEL----IGLVSKDWIIKFLSALHNGDGPAVLKYIQNALSEGRDGAQ 280


>gi|291541725|emb|CBL14835.1| Recombination protein MgsA [Ruminococcus bromii L2-63]
          Length = 421

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 68/146 (46%), Gaps = 16/146 (10%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP+T+++  GQ    +    L+  IE+       + +++F GP G+GKTTLA  +A++ 
Sbjct: 9   IRPKTIDDIVGQKHLIAPDRPLRKIIESGD-----IPNLIFYGPSGVGKTTLATYIAKKT 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRD-----VLFIDEIHRLSIIVEEILYPAMEDFQ 133
               +  +G   A   D+  ++  L         +L++DEI   +   ++ L   +E+  
Sbjct: 64  NRTLKKLNG-TTASTADIKEIVAQLNTFSGLNGILLYLDEIQYFNKKQQQTLLEYIENGS 122

Query: 134 LDLMVG--EGPSARSVKINLSRFTLI 157
           + L+    E P        LSR T+ 
Sbjct: 123 ITLIASTTENPYFYVYNAILSRSTVF 148


>gi|156717934|ref|NP_001096509.1| nuclear VCP-like [Xenopus (Silurana) tropicalis]
 gi|138519795|gb|AAI35412.1| LOC100125138 protein [Xenopus (Silurana) tropicalis]
          Length = 852

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E G+NF S  GP
Sbjct: 614 VLLAGPPGCGKTLLAKAVANESGLNFISVKGP 645


>gi|16272655|ref|NP_438873.1| ATP-dependent protease ATP-binding subunit ClpX [Haemophilus
           influenzae Rd KW20]
 gi|68249291|ref|YP_248403.1| ATP-dependent protease ATP-binding subunit ClpX [Haemophilus
           influenzae 86-028NP]
 gi|145635953|ref|ZP_01791638.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           PittAA]
 gi|260581527|ref|ZP_05849335.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Haemophilus
           influenzae RdAW]
 gi|319897850|ref|YP_004136047.1| ATP-dependent clp protease ATP-binding subunit clpx [Haemophilus
           influenzae F3031]
 gi|329122526|ref|ZP_08251110.1| ATP-dependent Clp protease ATP-binding subunit [Haemophilus
           aegyptius ATCC 11116]
 gi|1168980|sp|P44838|CLPX_HAEIN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|1573717|gb|AAC22372.1| ATP-dependent Clp protease, ATP-binding subunit (clpX) [Haemophilus
           influenzae Rd KW20]
 gi|68057490|gb|AAX87743.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Haemophilus
           influenzae 86-028NP]
 gi|145266786|gb|EDK06805.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           PittAA]
 gi|260091825|gb|EEW75780.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Haemophilus
           influenzae RdAW]
 gi|317433356|emb|CBY81735.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Haemophilus
           influenzae F3031]
 gi|327473155|gb|EGF18578.1| ATP-dependent Clp protease ATP-binding subunit [Haemophilus
           aegyptius ATCC 11116]
          Length = 411

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD--------LAALLTNLE--- 104
           ++L +GP G GKT LAQ +AR L V F       + +AG         L  LL N E   
Sbjct: 112 NILLIGPTGSGKTLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVLQKLLQNCEYDT 171

Query: 105 ---DRDVLFIDEIHRLS 118
              ++ +++IDEI ++S
Sbjct: 172 EKAEKGIIYIDEIDKIS 188


>gi|68484222|ref|XP_714003.1| hypothetical protein CaO19.9876 [Candida albicans SC5314]
 gi|68484337|ref|XP_713945.1| hypothetical protein CaO19.2340 [Candida albicans SC5314]
 gi|46435465|gb|EAK94846.1| hypothetical protein CaO19.2340 [Candida albicans SC5314]
 gi|46435525|gb|EAK94905.1| hypothetical protein CaO19.9876 [Candida albicans SC5314]
 gi|238878518|gb|EEQ42156.1| cell division control protein 48 [Candida albicans WO-1]
          Length = 826

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           VLF GPPG GKT LA+ VA E+  NF S  GP +     G+  + + ++ D+       V
Sbjct: 525 VLFFGPPGTGKTLLAKAVATEVSANFISVKGPELLSMWYGESESNIRDIFDKARAAAPTV 584

Query: 109 LFIDEIHRLS 118
           +F+DE+  ++
Sbjct: 585 VFLDELDSIA 594



 Score = 38.5 bits (88), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALL------TNLEDRDV 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L             +
Sbjct: 252 ILMYGPPGTGKTIMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPSI 311

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 312 IFIDEIDSIA 321


>gi|307596341|ref|YP_003902658.1| AAA ATPase central domain-containing protein [Vulcanisaeta
          distributa DSM 14429]
 gi|307551542|gb|ADN51607.1| AAA ATPase central domain protein [Vulcanisaeta distributa DSM
          14429]
          Length = 435

 Score = 45.1 bits (105), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 31/61 (50%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          +   RPR L E   Q EA   L  +I   +    +   V+ VGPPG GKTTLA  +A E 
Sbjct: 8  VEKYRPRRLSEVVNQEEAKKALLDWINDWEKGKPSKKAVMLVGPPGTGKTTLAYALANER 67

Query: 79 G 79
          G
Sbjct: 68 G 68


>gi|301169433|emb|CBW29033.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Haemophilus influenzae 10810]
          Length = 411

 Score = 45.1 bits (105), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD--------LAALLTNLE--- 104
           ++L +GP G GKT LAQ +AR L V F       + +AG         L  LL N E   
Sbjct: 112 NILLIGPTGSGKTLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVLQKLLQNCEYDT 171

Query: 105 ---DRDVLFIDEIHRLS 118
              ++ +++IDEI ++S
Sbjct: 172 EKAEKGIIYIDEIDKIS 188


>gi|254580125|ref|XP_002496048.1| ZYRO0C09262p [Zygosaccharomyces rouxii]
 gi|238938939|emb|CAR27115.1| ZYRO0C09262p [Zygosaccharomyces rouxii]
          Length = 830

 Score = 45.1 bits (105), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ VA E+  NF S  GP
Sbjct: 524 VLFYGPPGTGKTLLAKAVATEVSANFISVKGP 555



 Score = 39.3 bits (90), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTN-LEDRD-----V 108
           VL  GPPG GKT +A+ VA E G  F   +GP V++K AG+  + L    E+ +     +
Sbjct: 251 VLMYGPPGTGKTLMARAVANETGAFFFLINGPEVMSKMAGESESNLRKAFEEAEKNAPAI 310

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 311 IFIDEIDSIA 320


>gi|256073901|ref|XP_002573266.1| cell division control protein 48 aaa family protein  [Schistosoma
           mansoni]
 gi|238658442|emb|CAZ29498.1| cell division control protein 48 aaa family protein (transitional
           endoplasmic reticulum atpase), putative [Schistosoma
           mansoni]
          Length = 596

 Score = 45.1 bits (105), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 8/72 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 511 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDIFDKARQAAPCV 570

Query: 109 LFIDEIHRLSII 120
           LF DE+  ++ +
Sbjct: 571 LFFDELDSIAKV 582



 Score = 35.8 bits (81), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 238 ILLYGPPGTGKTLVARAVANESGSFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 297

Query: 109 LFIDEI 114
           +FIDE+
Sbjct: 298 IFIDEL 303


>gi|229845548|ref|ZP_04465676.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           6P18H1]
 gi|229811564|gb|EEP47265.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           6P18H1]
          Length = 411

 Score = 45.1 bits (105), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD--------LAALLTNLE--- 104
           ++L +GP G GKT LAQ +AR L V F       + +AG         L  LL N E   
Sbjct: 112 NILLIGPTGSGKTLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVLQKLLQNCEYDT 171

Query: 105 ---DRDVLFIDEIHRLS 118
              ++ +++IDEI ++S
Sbjct: 172 EKAEKGIIYIDEIDKIS 188


>gi|241949865|ref|XP_002417655.1| CDC48 ATPase, putative [Candida dubliniensis CD36]
 gi|223640993|emb|CAX45351.1| CDC48 ATPase, putative [Candida dubliniensis CD36]
          Length = 826

 Score = 45.1 bits (105), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ VA E+  NF S  GP
Sbjct: 525 VLFFGPPGTGKTLLAKAVATEVSANFISVKGP 556



 Score = 38.5 bits (88), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALL------TNLEDRDV 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L             +
Sbjct: 252 ILMYGPPGTGKTIMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPSI 311

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 312 IFIDEIDSIA 321


>gi|210633172|ref|ZP_03297708.1| hypothetical protein COLSTE_01621 [Collinsella stercoris DSM 13279]
 gi|210159212|gb|EEA90183.1| hypothetical protein COLSTE_01621 [Collinsella stercoris DSM 13279]
          Length = 635

 Score = 45.1 bits (105), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 39/105 (37%), Positives = 52/105 (49%), Gaps = 17/105 (16%)

Query: 26  TLEEFTGQVEACSNLKV---FIEAAKARAEALDH-----VLFVGPPGLGKTTLAQVVARE 77
           T ++  GQ EA  +LK    F+E  K R E +        L VGPPG GKT LA+ VA E
Sbjct: 183 TFKDVAGQEEAKESLKEVVDFLEKPK-RYEEIGAKLPRGALLVGPPGTGKTLLAKAVAGE 241

Query: 78  LGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--VLFIDEI 114
            GV F S SG    +      A  +  L    +++   ++FIDEI
Sbjct: 242 AGVPFFSISGSEFVEMFVGRGAAKVRDLFKQAKEKAPCIVFIDEI 286


>gi|145633844|ref|ZP_01789566.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           3655]
 gi|145637966|ref|ZP_01793605.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           PittHH]
 gi|148827883|ref|YP_001292636.1| ATP-dependent protease ATP-binding subunit ClpX [Haemophilus
           influenzae PittGG]
 gi|144985286|gb|EDJ92125.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           3655]
 gi|145268832|gb|EDK08796.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           PittHH]
 gi|148719125|gb|ABR00253.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           PittGG]
          Length = 411

 Score = 45.1 bits (105), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD--------LAALLTNLE--- 104
           ++L +GP G GKT LAQ +AR L V F       + +AG         L  LL N E   
Sbjct: 112 NILLIGPTGSGKTLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVLQKLLQNCEYDT 171

Query: 105 ---DRDVLFIDEIHRLS 118
              ++ +++IDEI ++S
Sbjct: 172 EKAEKGIIYIDEIDKIS 188


>gi|145540886|ref|XP_001456132.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124423942|emb|CAK88735.1| unnamed protein product [Paramecium tetraurelia]
          Length = 818

 Score = 45.1 bits (105), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 8/71 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ VA E   NF S  GP +     G+  + +  + D+       V
Sbjct: 527 VLFYGPPGCGKTLLAKAVASECSANFISIKGPELLTMWFGESESNVREVFDKARQASPCV 586

Query: 109 LFIDEIHRLSI 119
           LF DE+  +++
Sbjct: 587 LFFDELDSIAV 597



 Score = 40.4 bits (93), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 8/76 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLEDRD--V 108
           VL  GPPG GKT +A+ VA E G  F   +GP I         G+L       E     +
Sbjct: 254 VLLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGEAEGNLRKAFEEAEKNSPAI 313

Query: 109 LFIDEIHRLSIIVEEI 124
           +FIDEI  ++   E++
Sbjct: 314 IFIDEIDSIAPKREKV 329


>gi|50310633|ref|XP_455337.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49644473|emb|CAG98045.1| KLLA0F05676p [Kluyveromyces lactis]
          Length = 830

 Score = 45.1 bits (105), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           VLF GPPG GKT LA+ VA E+  NF S  GP +     G+  + + ++ D+       V
Sbjct: 524 VLFYGPPGTGKTLLAKAVATEVSANFISVKGPELLSMWYGESESNIRDIFDKARAAAPTV 583

Query: 109 LFIDEIHRLS 118
           +F+DE+  ++
Sbjct: 584 VFLDELDSIA 593



 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP V++K AG+  + L    E+ +     +
Sbjct: 251 ILMYGPPGTGKTLMARAVANETGAFFFLINGPEVMSKMAGESESNLRKAFEEAEKNAPAI 310

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 311 IFIDEIDSIA 320


>gi|229847177|ref|ZP_04467281.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           7P49H1]
 gi|229809853|gb|EEP45575.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           7P49H1]
 gi|309973788|gb|ADO96989.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Haemophilus
           influenzae R2846]
          Length = 411

 Score = 45.1 bits (105), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD--------LAALLTNLE--- 104
           ++L +GP G GKT LAQ +AR L V F       + +AG         L  LL N E   
Sbjct: 112 NILLIGPTGSGKTLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVLQKLLQNCEYDT 171

Query: 105 ---DRDVLFIDEIHRLS 118
              ++ +++IDEI ++S
Sbjct: 172 EKAEKGIIYIDEIDKIS 188


>gi|316968483|gb|EFV52755.1| putative ATPase, AAA family [Trichinella spiralis]
          Length = 869

 Score = 44.7 bits (104), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 574 VLFYGPPGCGKTLLAKAIAHECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCV 633

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 634 LFFDELDSIA 643



 Score = 39.3 bits (90), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    +        +
Sbjct: 298 ILLYGPPGCGKTLIARAVANETGAFFFLLNGPEIMSKLAGESESNLRKAFEECEKNAPSI 357

Query: 109 LFIDEIHRLS 118
           LFIDEI  ++
Sbjct: 358 LFIDEIDAIT 367


>gi|291402323|ref|XP_002717424.1| PREDICTED: nuclear VCP-like [Oryctolagus cuniculus]
          Length = 869

 Score = 44.7 bits (104), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E G+NF S  GP
Sbjct: 613 VLLAGPPGCGKTLLAKAVANESGLNFISVKGP 644


>gi|168048981|ref|XP_001776943.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671644|gb|EDQ58192.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 821

 Score = 44.7 bits (104), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 527 VLFYGPPGCGKTMLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARGSAPCV 586

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 587 LFFDELDSIA 596



 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 254 ILLFGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 313

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 314 IFIDEIDSIA 323


>gi|163791060|ref|ZP_02185481.1| cell division protein FtsH [Carnobacterium sp. AT7]
 gi|159873705|gb|EDP67788.1| cell division protein FtsH [Carnobacterium sp. AT7]
          Length = 718

 Score = 44.7 bits (104), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 97/223 (43%), Gaps = 39/223 (17%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108
           VL  GPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 226 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFENAKKAAPAI 285

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN-----LSRFT------LI 157
           +FIDEI  +               Q    +G G   R   +N     +  F+      +I
Sbjct: 286 IFIDEIDAVG-------------RQRGAGMGGGHDEREQTLNQLLVEMDGFSGNEGVIVI 332

Query: 158 AATTRVGLLTNPL--QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRS 215
           AAT R  +L   L    RF   I +   +++  + I++  AK   LA    A  ++A+ +
Sbjct: 333 AATNRSDVLDPALLRPGRFDRQILVGHPDVKGREAILKVHAKNKPLA----ADVDLAVVA 388

Query: 216 RGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKM 258
           R TP  +G  L  V + A +  A+   +EI DA  L  A D++
Sbjct: 389 RQTPGFSGADLENVLNEAALVAARRNKKEI-DALDLDEAQDRV 430


>gi|154282971|ref|XP_001542281.1| cell division cycle protein 48 [Ajellomyces capsulatus NAm1]
 gi|150410461|gb|EDN05849.1| cell division cycle protein 48 [Ajellomyces capsulatus NAm1]
          Length = 806

 Score = 44.7 bits (104), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ VA E   NF S  GP
Sbjct: 517 VLFYGPPGTGKTLLAKAVANECAANFISVKGP 548



 Score = 37.0 bits (84), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +   GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 243 IFMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 302

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 303 IFIDEIDSIA 312


>gi|148826641|ref|YP_001291394.1| ATP-dependent protease ATP-binding subunit ClpX [Haemophilus
           influenzae PittEE]
 gi|148716801|gb|ABQ99011.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           PittEE]
          Length = 411

 Score = 44.7 bits (104), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD--------LAALLTNLE--- 104
           ++L +GP G GKT LAQ +AR L V F       + +AG         L  LL N E   
Sbjct: 112 NILLIGPTGSGKTLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVLQKLLQNCEYDT 171

Query: 105 ---DRDVLFIDEIHRLS 118
              ++ +++IDEI ++S
Sbjct: 172 EKAEKGIIYIDEIDKIS 188


>gi|146415458|ref|XP_001483699.1| cell division control protein 48 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 825

 Score = 44.7 bits (104), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DV 108
           VLF GPPG GKT LA+ VA E+  NF S  GP +     G+  + + ++ D+       V
Sbjct: 523 VLFFGPPGTGKTLLAKAVATEVSANFISVKGPELLSMWYGESESNIRDIFDKARAAAPTV 582

Query: 109 LFIDEIHRLS 118
           +F+DE+  ++
Sbjct: 583 VFLDELDSIA 592



 Score = 38.9 bits (89), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 250 ILMYGPPGTGKTVMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNAPSI 309

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 310 IFIDEIDSIA 319


>gi|71033633|ref|XP_766458.1| cell division cycle protein 48 [Theileria parva strain Muguga]
 gi|68353415|gb|EAN34175.1| cell division cycle protein 48, putative [Theileria parva]
          Length = 811

 Score = 44.7 bits (104), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ VA E   NF S  GP
Sbjct: 529 VLFYGPPGCGKTLLAKAVASECSANFISVKGP 560



 Score = 37.7 bits (86), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALL------TNLEDRDV 108
           VL  GPPG GKT +A+ VA E G  F   +GP V++K AG+  + L             +
Sbjct: 256 VLLYGPPGSGKTLIARAVANETGAFFFLINGPEVMSKMAGEAESNLRRAFAEAEKNAPSI 315

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 316 IFIDEIDSIA 325


>gi|260583374|ref|ZP_05851145.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Haemophilus
           influenzae NT127]
 gi|260093579|gb|EEW77496.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Haemophilus
           influenzae NT127]
          Length = 411

 Score = 44.7 bits (104), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD--------LAALLTNLE--- 104
           ++L +GP G GKT LAQ +AR L V F       + +AG         L  LL N E   
Sbjct: 112 NILLIGPTGSGKTLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVLQKLLQNCEYDT 171

Query: 105 ---DRDVLFIDEIHRLS 118
              ++ +++IDEI ++S
Sbjct: 172 EKAEKGIIYIDEIDKIS 188


>gi|225320703|dbj|BAH29747.1| valosin-containing protein [Dicyema japonicum]
 gi|298916886|dbj|BAJ09740.1| valosin-containing protein [Dicyema japonicum]
          Length = 424

 Score = 44.7 bits (104), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       +
Sbjct: 155 VLFYGPPGCGKTLLAKAIAHECQANFISIKGPELLTMWFGESEANIRDIFDKARQASPCI 214

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 215 LFFDELDSIA 224


>gi|221109190|ref|XP_002169357.1| PREDICTED: similar to predicted protein, partial [Hydra
           magnipapillata]
          Length = 518

 Score = 44.7 bits (104), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 228 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARMAAPCV 287

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 288 LFFDELDSIA 297


>gi|160893843|ref|ZP_02074626.1| hypothetical protein CLOL250_01397 [Clostridium sp. L2-50]
 gi|156864495|gb|EDO57926.1| hypothetical protein CLOL250_01397 [Clostridium sp. L2-50]
          Length = 430

 Score = 44.7 bits (104), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 59/128 (46%), Gaps = 28/128 (21%)

Query: 19  ISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEA---------LDHVLFVGPPG 64
           I+LL+P+ + EF      GQ EA   L V +     R  A           ++L VGP G
Sbjct: 59  INLLKPKEIREFLDQYVIGQEEAKKVLSVAVYNHYKRIMADKDFDVELQKSNILMVGPTG 118

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---EDRDV-------LF 110
            GKT LAQ +A+ L V F       + +AG    D+  +L  L    D DV       ++
Sbjct: 119 SGKTYLAQTLAKILNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVERAEHGIIY 178

Query: 111 IDEIHRLS 118
           IDEI +++
Sbjct: 179 IDEIDKIT 186


>gi|146296233|ref|YP_001180004.1| ATP-dependent metalloprotease FtsH [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409809|gb|ABP66813.1| membrane protease FtsH catalytic subunit [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 615

 Score = 44.7 bits (104), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 48/95 (50%), Gaps = 11/95 (11%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           EE    ++   N + +IE     A     +L VGPPG GKT LA+ VA E GV F S SG
Sbjct: 177 EELKEVIDFLKNPRKYIELG---ARIPKGILLVGPPGTGKTLLAKAVAGEAGVPFFSISG 233

Query: 88  PVIAK--AGDLAALLTNLEDRD------VLFIDEI 114
               +   G  AA + +L D+       V+FIDEI
Sbjct: 234 SDFVEMFVGVGAARVRDLFDQAKRNAPCVVFIDEI 268


>gi|145639475|ref|ZP_01795080.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           PittII]
 gi|319775444|ref|YP_004137932.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Haemophilus
           influenzae F3047]
 gi|145271522|gb|EDK11434.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           PittII]
 gi|317450035|emb|CBY86249.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Haemophilus
           influenzae F3047]
          Length = 411

 Score = 44.7 bits (104), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD--------LAALLTNLE--- 104
           ++L +GP G GKT LAQ +AR L V F       + +AG         L  LL N E   
Sbjct: 112 NILLIGPTGSGKTLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVLQKLLQNCEYDT 171

Query: 105 ---DRDVLFIDEIHRLS 118
              ++ +++IDEI ++S
Sbjct: 172 EKAEKGIIYIDEIDKIS 188


>gi|145642382|ref|ZP_01797942.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           R3021]
 gi|145272925|gb|EDK12811.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           22.4-21]
          Length = 411

 Score = 44.7 bits (104), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD--------LAALLTNLE--- 104
           ++L +GP G GKT LAQ +AR L V F       + +AG         L  LL N E   
Sbjct: 112 NILLIGPTGSGKTLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVLQKLLQNCEYDT 171

Query: 105 ---DRDVLFIDEIHRLS 118
              ++ +++IDEI ++S
Sbjct: 172 EKAEKGIIYIDEIDKIS 188


>gi|159041476|ref|YP_001540728.1| TIP49-like protein [Caldivirga maquilingensis IC-167]
 gi|157920311|gb|ABW01738.1| TIP49-like protein [Caldivirga maquilingensis IC-167]
          Length = 456

 Score = 44.7 bits (104), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 25/52 (48%), Positives = 31/52 (59%)

Query: 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
          F GQVEA     + ++  KA   +   VL VGPPG GKT LA  +ARELG +
Sbjct: 42 FVGQVEAREAAAMVVKIIKAGKFSGKGVLIVGPPGTGKTALAIGIARELGAD 93


>gi|39937144|ref|NP_949420.1| AAA ATPase [Rhodopseudomonas palustris CGA009]
 gi|39651002|emb|CAE29525.1| AAA ATPase [Rhodopseudomonas palustris CGA009]
          Length = 663

 Score = 44.7 bits (104), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 8/82 (9%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL------ 103
           EA   VL  GPPG GKT +A+ VARE GV F   +GP I +   G+   +L  +      
Sbjct: 157 EAPKGVLLYGPPGCGKTLIARTVAREAGVYFLHVNGPEIIQKHYGESEEMLRRIFADAQK 216

Query: 104 EDRDVLFIDEIHRLSIIVEEIL 125
           +   ++F DEI  ++   E +L
Sbjct: 217 QPAAIIFFDEIDAIAPNRETVL 238


>gi|325117532|emb|CBZ53084.1| putative peroxisomal-type ATPase [Neospora caninum Liverpool]
          Length = 556

 Score = 44.7 bits (104), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT LA+ VA E GVNF S  GP
Sbjct: 304 ILLFGPPGTGKTLLAKAVATECGVNFISVKGP 335


>gi|302497219|ref|XP_003010610.1| hypothetical protein ARB_03311 [Arthroderma benhamiae CBS 112371]
 gi|291174153|gb|EFE29970.1| hypothetical protein ARB_03311 [Arthroderma benhamiae CBS 112371]
          Length = 908

 Score = 44.7 bits (104), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ VA E   NF S  GP
Sbjct: 624 VLFYGPPGTGKTLLAKAVANECAANFISVKGP 655



 Score = 38.1 bits (87), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 350 ILMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 409

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 410 IFIDEIDSIA 419


>gi|302424037|ref|XP_003009845.1| cell division cycle protein [Verticillium albo-atrum VaMs.102]
 gi|261361679|gb|EEY24107.1| cell division cycle protein [Verticillium albo-atrum VaMs.102]
          Length = 634

 Score = 44.7 bits (104), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ VA E   NF S  GP
Sbjct: 497 VLFYGPPGTGKTMLAKAVANECAANFISVKGP 528



 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           VL  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 256 VLLYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 315

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 316 IFIDEIDSIA 325


>gi|310750391|ref|NP_001073044.2| nuclear valosin-containing protein-like [Gallus gallus]
          Length = 844

 Score = 44.7 bits (104), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E G+NF S  GP
Sbjct: 606 VLLAGPPGCGKTLLAKAVANESGLNFISVKGP 637


>gi|151553618|gb|AAI48920.1| NVL protein [Bos taurus]
          Length = 773

 Score = 44.7 bits (104), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E G+NF S  GP
Sbjct: 535 VLLAGPPGCGKTLLAKAVANESGLNFISVKGP 566


>gi|6179734|gb|AAF05624.1| cell survival CED-4-interacting protein MAC-1 [Caenorhabditis
           elegans]
          Length = 813

 Score = 44.7 bits (104), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT LA+ VA E G+NF S  GP
Sbjct: 571 ILLCGPPGCGKTLLAKAVANETGMNFFSVKGP 602


>gi|327300188|ref|XP_003234787.1| cell division control protein Cdc48 [Trichophyton rubrum CBS
           118892]
 gi|326463681|gb|EGD89134.1| cell division control protein Cdc48 [Trichophyton rubrum CBS
           118892]
          Length = 814

 Score = 44.7 bits (104), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ VA E   NF S  GP
Sbjct: 530 VLFYGPPGTGKTLLAKAVANECAANFISVKGP 561



 Score = 38.1 bits (87), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 256 ILMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 315

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 316 IFIDEIDSIA 325


>gi|325118113|emb|CBZ53664.1| hypothetical protein NCLIV_034460 [Neospora caninum Liverpool]
          Length = 592

 Score = 44.7 bits (104), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ VA E   NF S  GP
Sbjct: 302 VLFYGPPGCGKTLLAKAVASECSANFVSIKGP 333



 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTN-LEDRD-----V 108
           VL  GPPG GKT +A+ VA E G  F   +GP V++K AG+  + L    E+ +     +
Sbjct: 29  VLLYGPPGSGKTLIAKAVANETGAFFFLINGPEVMSKMAGEAESNLRRAFEEAEKNAPAI 88

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 89  IFIDEIDSIA 98


>gi|296423208|ref|XP_002841147.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295637381|emb|CAZ85338.1| unnamed protein product [Tuber melanosporum]
          Length = 818

 Score = 44.7 bits (104), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ VA E   NF S  GP
Sbjct: 529 VLFYGPPGTGKTLLAKAVANECAANFISVKGP 560



 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 255 ILLYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 314

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 315 IFIDEIDSIA 324


>gi|254574502|ref|XP_002494360.1| ATPase in ER, nuclear membrane and cytosol with homology to
           mammalian p97 [Pichia pastoris GS115]
 gi|238034159|emb|CAY72181.1| ATPase in ER, nuclear membrane and cytosol with homology to
           mammalian p97 [Pichia pastoris GS115]
 gi|328353810|emb|CCA40207.1| transitional endoplasmic reticulum ATPase [Pichia pastoris CBS
           7435]
          Length = 830

 Score = 44.7 bits (104), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DV 108
           VLF GPPG GKT LA+ VA E+  NF S  GP +     G+  + + ++ D+       V
Sbjct: 524 VLFFGPPGTGKTLLAKAVATEVSANFISVKGPELLSMYFGESESNIRDIFDKARAAAPTV 583

Query: 109 LFIDEIHRLS 118
           +F+DE+  ++
Sbjct: 584 VFLDELDSIA 593



 Score = 38.9 bits (89), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAA-LLTNLEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L +  E+ +     +
Sbjct: 251 ILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRSAFEEAEKNAPSI 310

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 311 IFIDEIDSIA 320


>gi|221102685|ref|XP_002168499.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 769

 Score = 44.7 bits (104), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 479 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARMAAPCV 538

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 539 LFFDELDSIA 548


>gi|126466018|ref|YP_001041127.1| AAA family ATPase, CDC48 subfamily protein [Staphylothermus marinus
           F1]
 gi|126014841|gb|ABN70219.1| AAA family ATPase, CDC48 subfamily [Staphylothermus marinus F1]
          Length = 733

 Score = 44.7 bits (104), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 62/133 (46%), Gaps = 17/133 (12%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVE-ACSNLKVFIEAAKARAEALDH--------VLF 59
           S  V +E  + + + P+   E  G +E A   ++  +E      E   H        +L 
Sbjct: 168 SEPVKEEVIERARMIPKVTWEDIGDLEEAKQKIREIVELPLKHPELFKHLGIEPPKGILL 227

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL---EDRD---VLFI 111
            GPPG GKT LA+ +A E+G  F + +GP I     G+    L  +    +R+   ++FI
Sbjct: 228 YGPPGTGKTLLAKALANEIGAYFTAINGPEIMSKFYGESEQRLREIFEEAERNAPAIIFI 287

Query: 112 DEIHRLSIIVEEI 124
           DEI  ++   EE+
Sbjct: 288 DEIDSIAPKREEV 300



 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT LA+ VA E G NF +  GP I
Sbjct: 499 ILLFGPPGTGKTLLAKAVATESGANFIAVRGPEI 532


>gi|196010085|ref|XP_002114907.1| conserved hypothetical protein [Trichoplax adhaerens]
 gi|190582290|gb|EDV22363.1| conserved hypothetical protein [Trichoplax adhaerens]
          Length = 872

 Score = 44.7 bits (104), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 531 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCV 590

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 591 LFFDELDSIA 600



 Score = 37.0 bits (84), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT +A+ VA E G  F   +GP I
Sbjct: 243 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 276


>gi|154309232|ref|XP_001553950.1| hypothetical protein BC1G_07510 [Botryotinia fuckeliana B05.10]
 gi|150852334|gb|EDN27526.1| hypothetical protein BC1G_07510 [Botryotinia fuckeliana B05.10]
          Length = 823

 Score = 44.7 bits (104), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ VA E   NF S  GP
Sbjct: 533 VLFYGPPGTGKTLLAKAVANECSANFISVKGP 564



 Score = 38.5 bits (88), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           VL  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 259 VLMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 318

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 319 IFIDEIDSIA 328


>gi|517390|emb|CAA56097.1| cdcH [Halobacterium salinarum]
          Length = 742

 Score = 44.7 bits (104), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 8/71 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
           T ++  G  EA +N+K  +E    + E            VL  GPPG GKT +A+ VA E
Sbjct: 460 TWDDVGGLTEAKNNVKESVEWPLNQPEKFTRMGVEPPAGVLLYGPPGTGKTLMAKAVANE 519

Query: 78  LGVNFRSTSGP 88
              NF S  GP
Sbjct: 520 TNANFISVRGP 530



 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 8/76 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-----AGDLAALLTNLEDR--DV 108
           VL  GPPG GKT LA+ VA E   +F S +GP +I+K        L  +  + +D    +
Sbjct: 226 VLLHGPPGTGKTLLAKAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDAKDDSPSI 285

Query: 109 LFIDEIHRLSIIVEEI 124
           +FIDE+  ++   E++
Sbjct: 286 IFIDELDSIAPKREDV 301


>gi|68068217|ref|XP_676018.1| cell division cycle ATPase [Plasmodium berghei strain ANKA]
 gi|56495516|emb|CAH99651.1| cell division cycle ATPase, putative [Plasmodium berghei]
          Length = 932

 Score = 44.7 bits (104), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           +L  GPPG GKT LA+ +A E   NF S  GP +     G+  A + +L D+       +
Sbjct: 673 ILLYGPPGCGKTLLAKAIANECNANFISVKGPELLTMWFGESEANVRDLFDKARAASPCI 732

Query: 109 LFIDEIHRLS 118
           +F DEI  L+
Sbjct: 733 IFFDEIDSLA 742


>gi|50291367|ref|XP_448116.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49527427|emb|CAG61067.1| unnamed protein product [Candida glabrata]
          Length = 830

 Score = 44.7 bits (104), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           VLF GPPG GKT LA+ VA E+  NF S  GP +     G+  + + ++ D+       V
Sbjct: 524 VLFYGPPGTGKTLLAKAVATEVSANFISVKGPELLSMWYGESESNIRDIFDKARAAAPTV 583

Query: 109 LFIDEIHRLS 118
           +F+DE+  ++
Sbjct: 584 VFLDELDSIA 593



 Score = 38.9 bits (89), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTN-LEDRD-----V 108
           VL  GPPG GKT +A+ VA E G  F   +GP V++K AG+  + L    E+ +     +
Sbjct: 251 VLMYGPPGTGKTLMARAVANETGAFFFLINGPEVMSKMAGESESNLRKAFEEAEKNAPAI 310

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 311 IFIDEIDSIA 320


>gi|18310769|ref|NP_562703.1| recombination factor protein RarA [Clostridium perfringens str. 13]
 gi|18145450|dbj|BAB81493.1| conserved hypothetical protein [Clostridium perfringens str. 13]
          Length = 408

 Score = 44.7 bits (104), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 69/144 (47%), Gaps = 14/144 (9%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP+ LE+  GQ   V   + L   I     + + + + +F GPPG+GKTTLA +++   
Sbjct: 1   MRPKKLEDIVGQKHIVGEGTPLNKLI-----KNKNIINCIFYGPPGVGKTTLANIISNYT 55

Query: 79  GVNFRSTSGPV--IAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQL 134
              F   +     I +   + + + NL +    +L+IDE+   +   ++ L   +ED ++
Sbjct: 56  DKKFYKINATTSSIKEIQSITSDIDNLLNFKGIILYIDELQHFNKKQQQALLEFIEDGRV 115

Query: 135 DLMVG--EGPSARSVKINLSRFTL 156
            L+    E P     K  LSR T+
Sbjct: 116 ILIASTTENPYFAIHKAILSRSTI 139


>gi|302662987|ref|XP_003023142.1| hypothetical protein TRV_02721 [Trichophyton verrucosum HKI 0517]
 gi|291187123|gb|EFE42524.1| hypothetical protein TRV_02721 [Trichophyton verrucosum HKI 0517]
          Length = 903

 Score = 44.7 bits (104), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ VA E   NF S  GP
Sbjct: 619 VLFYGPPGTGKTLLAKAVANECAANFISVKGP 650



 Score = 38.1 bits (87), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 345 ILMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 404

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 405 IFIDEIDSIA 414


>gi|256073903|ref|XP_002573267.1| cell division control protein 48 aaa family protein  [Schistosoma
           mansoni]
 gi|238658443|emb|CAZ29499.1| cell division control protein 48 aaa family protein (transitional
           endoplasmic reticulum atpase), putative [Schistosoma
           mansoni]
          Length = 649

 Score = 44.7 bits (104), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 357 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDIFDKARQAAPCV 416

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 417 LFFDELDSIA 426



 Score = 35.8 bits (81), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 84  ILLYGPPGTGKTLVARAVANESGSFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 143

Query: 109 LFIDEI 114
           +FIDE+
Sbjct: 144 IFIDEL 149


>gi|157787079|ref|NP_001099450.1| nuclear valosin-containing protein-like [Rattus norvegicus]
 gi|149040892|gb|EDL94849.1| nuclear VCP-like (predicted) [Rattus norvegicus]
          Length = 855

 Score = 44.7 bits (104), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E G+NF S  GP
Sbjct: 617 VLLAGPPGCGKTLLAKAVANESGLNFISVKGP 648



 Score = 37.4 bits (85), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRDV------ 108
           VL  GPPG GKT LA  +A EL +     + P I    +G+    L +L D+ V      
Sbjct: 300 VLLHGPPGCGKTLLAHAIAGELDLPILKVAAPEIVSGVSGESEQKLRDLFDQAVSNAPCI 359

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 360 VFIDEI 365


>gi|170720266|ref|YP_001747954.1| ATP-dependent protease La [Pseudomonas putida W619]
 gi|169758269|gb|ACA71585.1| ATP-dependent protease La [Pseudomonas putida W619]
          Length = 808

 Score = 44.7 bits (104), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 88/215 (40%), Gaps = 53/215 (24%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAKAGDLAALLT 101
           VL VGPPG+GKT++ + +A  LG  F   S                 + A+ G L   L 
Sbjct: 390 VLLVGPPGVGKTSIGKSIAESLGRPFYRFSVGGMRDEAEIKGHRRTYIGAQPGKLVQALK 449

Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAME----DFQLDLMVGEGPSARSVK 148
           ++E  + V+ +DEI ++    +        E L P       D  LDL           +
Sbjct: 450 DVEVMNPVIMLDEIDKMGQSYQGDPASALLETLDPEQNVDFLDHYLDL-----------R 498

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR----------GAKL 198
           ++LS+   +     +  +  PL DR  + IRL+ Y  E+   I +R          G   
Sbjct: 499 LDLSKVLFVCTANTLDSIPGPLLDRMEV-IRLSGYITEEKLAIAKRHLWPKQLEKAGVAK 557

Query: 199 TGLAVTDE---AACEIAMRSRGTPRIAGRLLRRVR 230
           T LA++D    A  E   R  G  ++  +L + VR
Sbjct: 558 TSLAISDSALRAVIEGYAREAGVRQLEKQLGKLVR 592


>gi|148228613|ref|NP_001079582.1| nuclear VCP-like [Xenopus laevis]
 gi|28278757|gb|AAH44980.1| MGC52979 protein [Xenopus laevis]
          Length = 854

 Score = 44.7 bits (104), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E G+NF S  GP
Sbjct: 616 VLLAGPPGCGKTLLAKAVANESGLNFISVKGP 647


>gi|332981202|ref|YP_004462643.1| membrane protease FtsH catalytic subunit [Mahella australiensis
           50-1 BON]
 gi|332698880|gb|AEE95821.1| membrane protease FtsH catalytic subunit [Mahella australiensis
           50-1 BON]
          Length = 602

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 51/104 (49%), Gaps = 15/104 (14%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  E    LK  +E  K+  + L+        VL +GPPG GKT LA+ VA E 
Sbjct: 158 TFNDVAGADEEKQELKEVVEFLKSPRKFLELGARIPKGVLLIGPPGTGKTLLAKAVAGEA 217

Query: 79  GVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEI 114
           GV F S SG    +   G  AA + +L D+       ++FIDEI
Sbjct: 218 GVPFFSISGSDFVEMFVGVGAARVRDLFDQAKKNSPCIVFIDEI 261


>gi|326473474|gb|EGD97483.1| cell division control protein Cdc48 [Trichophyton tonsurans CBS
           112818]
 gi|326480303|gb|EGE04313.1| cell division cycle protein 48 [Trichophyton equinum CBS 127.97]
          Length = 814

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ VA E   NF S  GP
Sbjct: 530 VLFYGPPGTGKTLLAKAVANECAANFISVKGP 561



 Score = 38.1 bits (87), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 256 ILMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 315

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 316 IFIDEIDSIA 325


>gi|315042203|ref|XP_003170478.1| hypothetical protein MGYG_07723 [Arthroderma gypseum CBS 118893]
 gi|311345512|gb|EFR04715.1| hypothetical protein MGYG_07723 [Arthroderma gypseum CBS 118893]
          Length = 814

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ VA E   NF S  GP
Sbjct: 530 VLFYGPPGTGKTLLAKAVANECAANFISVKGP 561



 Score = 38.1 bits (87), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 256 ILMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 315

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 316 IFIDEIDSIA 325


>gi|258648498|ref|ZP_05735967.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella
           tannerae ATCC 51259]
 gi|260851263|gb|EEX71132.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella
           tannerae ATCC 51259]
          Length = 415

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 71/141 (50%), Gaps = 33/141 (23%)

Query: 11  NVSQEDADISLL-RPRTLEEF-----TGQVEACSNLKV-----FIEAAKARAEALD---- 55
           N+S+ED D+  + RP+ ++ +      GQ +A   L V     +   A+   +A+D    
Sbjct: 54  NISKEDIDLKRIPRPQEIKSYLDQYVIGQEDAKRYLSVSVYNHYKRLAQENLDAVDDGVE 113

Query: 56  ----HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLT------ 101
               +++ VG  G GKT LA+ +AR L V F      V  +AG    D+ ++L+      
Sbjct: 114 IEKSNIIMVGTTGTGKTLLARTIARLLDVPFTIVDATVFTEAGYVGEDVESILSRLLQEA 173

Query: 102 --NLE--DRDVLFIDEIHRLS 118
             N+E  +R ++FIDEI +++
Sbjct: 174 DFNVERAERGIVFIDEIDKIA 194


>gi|256073899|ref|XP_002573265.1| cell division control protein 48 aaa family protein  [Schistosoma
           mansoni]
 gi|238658441|emb|CAZ29497.1| cell division control protein 48 aaa family protein (transitional
           endoplasmic reticulum atpase), putative [Schistosoma
           mansoni]
          Length = 803

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 511 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDIFDKARQAAPCV 570

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 571 LFFDELDSIA 580



 Score = 35.8 bits (81), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 238 ILLYGPPGTGKTLVARAVANESGSFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 297

Query: 109 LFIDEI 114
           +FIDE+
Sbjct: 298 IFIDEL 303


>gi|38455496|gb|AAR20845.1| cell division cycle protein 48 [Pseudochlorella sp. CCAP 211/1A]
          Length = 614

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 320 VLFYGPPGCGKTPLAKAIANECQANFISVKGPELLTMWFGESEANVREILDKARQSAPCV 379

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 380 LFFDELDSIA 389



 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 47  ILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAI 106

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 107 IFIDEIDSIA 116


>gi|85000801|ref|XP_955119.1| replication factor [Theileria annulata strain Ankara]
 gi|65303265|emb|CAI75643.1| replication factor, putative [Theileria annulata]
          Length = 299

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 38/70 (54%), Gaps = 6/70 (8%)

Query: 16 DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
          D  I   RP TLEE  G  E    L+ FI    A+   + ++L  GPPG GKTT    +A
Sbjct: 6  DIWIEKYRPSTLEEIIGNPEITKRLQ-FI----AKEGNMPNLLLCGPPGTGKTTSVLCLA 60

Query: 76 RE-LGVNFRS 84
          RE LG +F+S
Sbjct: 61 REMLGSHFKS 70


>gi|167036728|ref|YP_001664306.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|167039447|ref|YP_001662432.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter sp. X514]
 gi|256751850|ref|ZP_05492722.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|300915473|ref|ZP_07132786.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter sp. X561]
 gi|307725228|ref|YP_003904979.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter sp. X513]
 gi|320115150|ref|YP_004185309.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|310943091|sp|B0K5A3|FTSH1_THEPX RecName: Full=ATP-dependent zinc metalloprotease FtsH 1
 gi|166853687|gb|ABY92096.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter sp. X514]
 gi|166855562|gb|ABY93970.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|256749257|gb|EEU62289.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|300888533|gb|EFK83682.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter sp. X561]
 gi|307582289|gb|ADN55688.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter sp. X513]
 gi|319928241|gb|ADV78926.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 611

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 39/95 (41%), Positives = 47/95 (49%), Gaps = 11/95 (11%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           EE    VE     K F+E     A     VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 171 EELQEIVEFLKYPKKFLELG---ARIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 227

Query: 88  PVIAK--AGDLAALLTNLEDRD------VLFIDEI 114
               +   G  AA + +L D+       ++FIDEI
Sbjct: 228 SDFVEMFVGVGAARVRDLFDQAKKNAPCIVFIDEI 262


>gi|330954583|gb|EGH54843.1| recombination factor protein RarA [Pseudomonas syringae Cit 7]
          Length = 92

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 2/65 (3%)

Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
          LR   L+E+ GQ    ++ K   EA +  A  L  ++F GPPG+GKTTLA+++A+    +
Sbjct: 17 LRATNLDEYVGQEHVLAHGKPLREALEQGA--LHSMIFWGPPGVGKTTLAKLLAKVSDAH 74

Query: 82 FRSTS 86
          F + S
Sbjct: 75 FETVS 79


>gi|326915142|ref|XP_003203879.1| PREDICTED: nuclear valosin-containing protein-like [Meleagris
           gallopavo]
          Length = 874

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E G+NF S  GP
Sbjct: 636 VLLAGPPGCGKTLLAKAVANESGLNFISVKGP 667


>gi|313237262|emb|CBY19901.1| unnamed protein product [Oikopleura dioica]
          Length = 690

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ +A E G+NF S  GP
Sbjct: 464 VLLTGPPGCGKTLLAKAIANESGLNFISVKGP 495


>gi|299744108|ref|XP_001840883.2| AAA family ATPase [Coprinopsis cinerea okayama7#130]
 gi|298405968|gb|EAU80936.2| AAA family ATPase [Coprinopsis cinerea okayama7#130]
          Length = 789

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 45/104 (43%), Gaps = 21/104 (20%)

Query: 5   EGLLSRNVSQEDADISLLRPRTL------------EEFTGQVEACSNLKVFIEAAKARAE 52
           EGL+  +++  DA + ++RP  +             E  GQ E    L+  +E      E
Sbjct: 488 EGLI-LDIADLDAALPMVRPSAMRSLFVDTPAVRYSEIGGQAEVIQKLREAVEWPLLHPE 546

Query: 53  ALDH--------VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           A           VL  GPPG  KT LA+  A E GVNF +  GP
Sbjct: 547 AFQRLGVKPPKGVLLYGPPGCSKTVLARACACESGVNFVAVKGP 590


>gi|288803735|ref|ZP_06409164.1| cell division protein FtsH [Prevotella melaninogenica D18]
 gi|288333824|gb|EFC72270.1| cell division protein FtsH [Prevotella melaninogenica D18]
          Length = 676

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 108/264 (40%), Gaps = 51/264 (19%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ  A   ++  +E  K   +  D         L VGPPG GKT LA+ VA E 
Sbjct: 190 TFKDVAGQTGAKQEVQEIVEFLKNPKKYTDLGGKIPKGALLVGPPGTGKTLLAKAVAGEA 249

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG       V   A  +  +    +++   ++FIDEI  +     +   PAM 
Sbjct: 250 GVPFFSMSGSDFVEMFVGVGASRVRDVFHQAKEKSPCIIFIDEIDAVGRARSK--NPAM- 306

Query: 131 DFQLDLMVGEGPSARSVKINL-----------SRFTLIAATTRVGLLTNPL--QDRFGIP 177
                     G   R   +N            S   ++AAT RV +L   L    RF   
Sbjct: 307 ---------GGNDERENTLNALLTEMDGFGTNSGVIVLAATNRVDMLDKALLRAGRFDRQ 357

Query: 178 IRLNFYEIEDLKTIV---QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
           I ++  ++ + K I     R  KL       E   +I + +R TP  +G  +  V + A 
Sbjct: 358 IHVDLPDLPERKEIFLVHMRNLKL-------EKNLDIDLLARQTPGFSGADIANVCNEAA 410

Query: 235 VAHAKTITREIADAALLRLAIDKM 258
           +  A+  ++E+     L  A+D++
Sbjct: 411 LIAARHNSKEVTKQDFLD-AVDRI 433


>gi|237833247|ref|XP_002365921.1| cell division protein 48, putative [Toxoplasma gondii ME49]
 gi|211963585|gb|EEA98780.1| cell division protein 48, putative [Toxoplasma gondii ME49]
 gi|221488381|gb|EEE26595.1| cell division protein, putative [Toxoplasma gondii GT1]
 gi|221508884|gb|EEE34453.1| cell division protein, putative [Toxoplasma gondii VEG]
          Length = 811

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ VA E   NF S  GP
Sbjct: 520 VLFYGPPGCGKTLLAKAVASECSANFVSIKGP 551



 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTN-LEDRD-----V 108
           VL  GPPG GKT +A+ VA E G  F   +GP V++K AG+  + L    E+ +     +
Sbjct: 247 VLLYGPPGSGKTLIAKAVANETGAFFFLINGPEVMSKMAGEAESNLRRAFEEAEKNAPAI 306

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 307 IFIDEIDSIA 316


>gi|220917331|ref|YP_002492635.1| ATP-dependent protease La [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955185|gb|ACL65569.1| ATP-dependent protease La [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 835

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 93/233 (39%), Gaps = 55/233 (23%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA---GDLAALLTNLEDR------ 106
           + FVGPPG+GKT+L Q +AR  G  F R + G V  +A   G     +  L  R      
Sbjct: 376 LCFVGPPGVGKTSLGQSIARATGRKFVRLSLGGVRDEAEIRGHRRTYVGALPGRIIQSMK 435

Query: 107 ------DVLFIDEIHRL--------SIIVEEILYP----AMEDFQLDLMVGEGPSARSVK 148
                  V+ +DEI +L        S  + E+L P    A  D  LDL            
Sbjct: 436 KAGTVNPVMMLDEIDKLGADFRGDPSAALLEVLDPEQNHAFSDHYLDL-----------S 484

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ----------RGAKL 198
            +LS+   I     +  +  PL+DR  I + L  Y  E+   I Q           G   
Sbjct: 485 YDLSKVMFIGTANLLDPIPGPLKDRMEI-LELPGYTFEEKVHIAQNHLIPKQLREHGLSA 543

Query: 199 TGLAVTDEAACEIAMRSRGTPRIAG--RLLRRVRDFAEVAHAKTITREIADAA 249
             +A+T++A  +I M      R AG   L RR+ D       +  + +I  AA
Sbjct: 544 DAIAITEKALIKIIM---AYTREAGVRNLERRIADVCRAIAVEVASGKIGAAA 593


>gi|156058356|ref|XP_001595101.1| hypothetical protein SS1G_03189 [Sclerotinia sclerotiorum 1980]
 gi|154700977|gb|EDO00716.1| hypothetical protein SS1G_03189 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 823

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ VA E   NF S  GP
Sbjct: 533 VLFYGPPGTGKTLLAKAVANECSANFISVKGP 564



 Score = 38.5 bits (88), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           VL  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 259 VLMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 318

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 319 IFIDEIDSIA 328


>gi|126341344|ref|XP_001368801.1| PREDICTED: similar to peroxisome biogenesis disorder protein 1
           isoform 2 [Monodelphis domestica]
          Length = 1250

 Score = 44.7 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 19/32 (59%), Positives = 23/32 (71%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT +A V+ARE G+NF S  GP
Sbjct: 844 ILLYGPPGTGKTLIAGVIARESGMNFISIKGP 875


>gi|50555822|ref|XP_505319.1| YALI0F12155p [Yarrowia lipolytica]
 gi|49651189|emb|CAG78126.1| YALI0F12155p [Yarrowia lipolytica]
          Length = 814

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ VA E+  NF S  GP
Sbjct: 527 VLFYGPPGTGKTLLAKAVATEVSANFISVKGP 558



 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 254 ILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 313

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 314 IFIDEIDSIA 323


>gi|268532274|ref|XP_002631265.1| Hypothetical protein CBG03070 [Caenorhabditis briggsae]
          Length = 807

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 519 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCV 578

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 579 LFFDELDSIA 588



 Score = 38.9 bits (89), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 56/127 (44%), Gaps = 15/127 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-----AGDLAALLTNLEDRD--V 108
           +L  GPPG GKT +A+ VA E G  F   +GP V++K       +L       E     +
Sbjct: 247 ILLFGPPGTGKTLIARAVANETGSFFFLINGPEVMSKMSGESESNLRKAFEECEKNQPAI 306

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           LFIDEI  ++   E+            L + +G   R      S   +IAAT R   +  
Sbjct: 307 LFIDEIDAIAPKREKTNGEVERIVSQLLTLMDGVKGR------SNLVVIAATNRPNSIDG 360

Query: 169 PLQDRFG 175
            L+ RFG
Sbjct: 361 ALR-RFG 366


>gi|15790615|ref|NP_280439.1| cell division cycle protein [Halobacterium sp. NRC-1]
 gi|169236353|ref|YP_001689553.1| AAA-type ATPase (transitional ATPase homolog) [Halobacterium
           salinarum R1]
 gi|12229754|sp|Q9HPF0|CDCH_HALSA RecName: Full=Protein CdcH
 gi|10581137|gb|AAG19919.1| cell division cycle protein [Halobacterium sp. NRC-1]
 gi|167727419|emb|CAP14207.1| AAA-type ATPase (transitional ATPase homolog) [Halobacterium
           salinarum R1]
          Length = 742

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 8/71 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
           T ++  G  EA +N+K  +E    + E            VL  GPPG GKT +A+ VA E
Sbjct: 460 TWDDVGGLTEAKNNVKESVEWPLNQPEKFTRMGVEPPAGVLLYGPPGTGKTLMAKAVANE 519

Query: 78  LGVNFRSTSGP 88
              NF S  GP
Sbjct: 520 TNANFISVRGP 530



 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 8/76 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-----AGDLAALLTNLEDR--DV 108
           VL  GPPG GKT LA+ VA E   +F S +GP +I+K        L  +  + +D    +
Sbjct: 226 VLLHGPPGTGKTLLAKAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDAKDDSPSI 285

Query: 109 LFIDEIHRLSIIVEEI 124
           +FIDE+  ++   E++
Sbjct: 286 IFIDELDSIAPKREDV 301


>gi|326501984|dbj|BAK06484.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 613

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 9/72 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA---------GDLAALLTNLEDRD 107
           VLF GPPG GKT+ A+V+A++ GV        +I            G + +L  NL D  
Sbjct: 383 VLFEGPPGTGKTSSARVIAKQAGVPLLYVPLEIIMSKYYGESERLLGSVFSLANNLPDGG 442

Query: 108 VLFIDEIHRLSI 119
           ++F+DE+   +I
Sbjct: 443 IIFLDEVDSFAI 454


>gi|324513590|gb|ADY45579.1| Transitional endoplasmic reticulum ATPase 2 [Ascaris suum]
          Length = 474

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 183 VLFYGPPGCGKTLLAKAIAHECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCV 242

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 243 LFFDELDSVA 252


>gi|242039557|ref|XP_002467173.1| hypothetical protein SORBIDRAFT_01g020910 [Sorghum bicolor]
 gi|241921027|gb|EER94171.1| hypothetical protein SORBIDRAFT_01g020910 [Sorghum bicolor]
          Length = 810

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 521 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCV 580

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 581 LFFDELDSIA 590



 Score = 38.1 bits (87), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 248 ILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 307

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 308 IFIDEIDSIA 317


>gi|194385100|dbj|BAG60956.1| unnamed protein product [Homo sapiens]
          Length = 589

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E G+NF S  GP
Sbjct: 512 VLLAGPPGCGKTLLAKAVANESGLNFISVKGP 543


>gi|119174931|ref|XP_001239786.1| hypothetical protein CIMG_09407 [Coccidioides immitis RS]
 gi|303314629|ref|XP_003067323.1| Cell division control protein 48, putative [Coccidioides posadasii
           C735 delta SOWgp]
 gi|240106991|gb|EER25178.1| Cell division control protein 48, putative [Coccidioides posadasii
           C735 delta SOWgp]
 gi|320037644|gb|EFW19581.1| cell division control protein Cdc48 [Coccidioides posadasii str.
           Silveira]
          Length = 815

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ VA E   NF S  GP
Sbjct: 533 VLFYGPPGTGKTLLAKAVANECAANFISVKGP 564



 Score = 38.1 bits (87), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 259 ILMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 318

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 319 IFIDEIDSIA 328


>gi|7509992|pir||T31590 hypothetical protein Y48C3A.h - Caenorhabditis elegans
          Length = 856

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT LA+ VA E G+NF S  GP
Sbjct: 614 ILLCGPPGCGKTLLAKAVANETGMNFISVKGP 645


>gi|329770552|ref|ZP_08261930.1| ATP-dependent protease La [Gemella sanguinis M325]
 gi|328836301|gb|EGF85970.1| ATP-dependent protease La [Gemella sanguinis M325]
          Length = 765

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 90/189 (47%), Gaps = 38/189 (20%)

Query: 43  FIEAAKARAEALDHVLFV-GPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA------- 93
           F+   K R +    +L + GPPG+GK++LA+ +A+ +G +F R + G V  +A       
Sbjct: 330 FLAVKKLRDDMKSPILCLSGPPGVGKSSLAKSIAKSMGRSFVRISLGGVRDEAEIRGHRR 389

Query: 94  -------GDLAALLTNLEDRD-VLFIDEIHRLSIIVE--------EILYPAMEDFQLDLM 137
                  G L   L  ++ ++ V+ +DEI +++  ++        E++ PA  +  +D  
Sbjct: 390 TYLGALPGKLIQSLKKVKTKNPVILLDEIDKMTSDIKGDPSSAMLEVIDPAQNNEFVDHY 449

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED-----LKTIV 192
           +        +  +LS+   IA    + L+  PL+DR  + I L  Y +++     +K ++
Sbjct: 450 L-------DIPFDLSKVLFIATANNLSLIPAPLRDRMEV-IELESYTVKEKENIAVKYLI 501

Query: 193 QRGAKLTGL 201
            R  K  GL
Sbjct: 502 PRQIKENGL 510


>gi|312792835|ref|YP_004025758.1| ATP-dependent metalloprotease ftsh [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312179975|gb|ADQ40145.1| ATP-dependent metalloprotease FtsH [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 616

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 48/95 (50%), Gaps = 11/95 (11%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           EE    ++   N + +IE     A     +L VGPPG GKT LA+ VA E GV F S SG
Sbjct: 178 EELKEVIDFLKNPRKYIELG---ARIPKGILLVGPPGTGKTLLAKAVAGEAGVPFFSISG 234

Query: 88  PVIAK--AGDLAALLTNLEDRD------VLFIDEI 114
               +   G  AA + +L D+       V+FIDEI
Sbjct: 235 SDFVEMFVGVGAARVRDLFDQAKRNAPCVVFIDEI 269


>gi|77927260|gb|ABB05505.1| PEX6 [Trypanosoma brucei]
          Length = 982

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 23/32 (71%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +LF GPPG GKT LA+ VA E+ +NF +  GP
Sbjct: 721 ILFYGPPGCGKTLLAKAVATEMNMNFMAVKGP 752


>gi|332796393|ref|YP_004457893.1| AAA ATPase [Acidianus hospitalis W1]
 gi|332694128|gb|AEE93595.1| AAA family ATPase, CDC48 subfamily [Acidianus hospitalis W1]
          Length = 750

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 8/76 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DV 108
           +L  GPPG+GKT LA+ +A E+G  F S +GP I     G+    L  + D        +
Sbjct: 214 ILLYGPPGVGKTLLARALANEIGAYFISINGPEIMSKFYGESEERLRQIFDEANKNAPSI 273

Query: 109 LFIDEIHRLSIIVEEI 124
           +FIDEI  ++   EE+
Sbjct: 274 IFIDEIDAIAPKREEV 289



 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDR------DV 108
           VL  GPPG GKT LA+ VA E G NF +  GP V++K  G+    +  +  R       V
Sbjct: 489 VLLFGPPGTGKTMLAKAVATESGANFIAVRGPEVLSKWVGESEKAIREIFRRARQTAPTV 548

Query: 109 LFIDEIHRLS 118
           +F DEI  ++
Sbjct: 549 IFFDEIDSIA 558


>gi|323697670|ref|ZP_08109582.1| ATP-dependent protease La [Desulfovibrio sp. ND132]
 gi|323457602|gb|EGB13467.1| ATP-dependent protease La [Desulfovibrio desulfuricans ND132]
          Length = 820

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 93/228 (40%), Gaps = 67/228 (29%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           + FVGPPG+GKT++A+ +AR +   F R + G V  +A              G +   L 
Sbjct: 367 LCFVGPPGVGKTSIARSIARSMDREFLRLSLGGVRDEAEIRGHRRTYVGAMPGKIIQSLK 426

Query: 102 NLE-DRDVLFIDEIHRLSIIVE--------EILYP----AMEDFQLDLMVGEGPSARSVK 148
            ++ +  V+ +DE+ ++S            E+L P    A  D  LDL            
Sbjct: 427 RVKFNNPVICLDEVDKMSADFRGDPSAALLEVLDPEQNYAFNDHYLDL-----------D 475

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY-EIEDL---------KTIVQRGAKL 198
            +LS+   I     +  +  PLQDR  I IRL  Y E E +         K I Q G K 
Sbjct: 476 YDLSKVFFITTANSLEGIPLPLQDRMEI-IRLPGYLETEKVEIAKGFLVPKQIKQHGLKP 534

Query: 199 TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             L ++D A  ++                 VR + + A  + + REIA
Sbjct: 535 ENLKISDNAILDV-----------------VRYYTKEAGVRNLEREIA 565


>gi|296816168|ref|XP_002848421.1| cell division cycle protein 48 [Arthroderma otae CBS 113480]
 gi|238841446|gb|EEQ31108.1| cell division cycle protein 48 [Arthroderma otae CBS 113480]
          Length = 814

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ VA E   NF S  GP
Sbjct: 530 VLFYGPPGTGKTLLAKAVANECAANFISVKGP 561



 Score = 38.1 bits (87), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 256 ILMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 315

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 316 IFIDEIDSIA 325


>gi|190409543|gb|EDV12808.1| replication factor C subunit 2 [Saccharomyces cerevisiae RM11-1a]
          Length = 353

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+ L+E T Q  A + LK  +++A      L H+LF GPPG GKT+    + +EL
Sbjct: 32 RPKNLDEVTAQDHAVTVLKKTLKSAN-----LPHMLFYGPPGTGKTSTILALTKEL 82


>gi|156740991|ref|YP_001431120.1| ATP-dependent protease La [Roseiflexus castenholzii DSM 13941]
 gi|156232319|gb|ABU57102.1| ATP-dependent protease La [Roseiflexus castenholzii DSM 13941]
          Length = 786

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 99/218 (45%), Gaps = 47/218 (21%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA---GDLAALLTNLEDRDVLFID 112
           + FVGPPG+GKT+L + +AR LG  F R++ G +  +A   G     +  L  R +  + 
Sbjct: 357 LCFVGPPGVGKTSLGRSIARALGRKFVRTSLGGIRDEAEIRGHRRTYIGALPGRIIQGMK 416

Query: 113 EIH-RLSIIVEEILYPAMEDFQ-------LDLMVGEGPSARS-----VKINLSRFTLIAA 159
               R  + V + +    +DF+       L+++  E  +A S     +  +LS+   IA 
Sbjct: 417 TAKSRYPVYVLDEIDKVGQDFRGDPTSALLEVLDPEQNNAFSDHYLEIPFDLSQVVFIAT 476

Query: 160 TTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT------IVQRGAKLTGLA-----VTDEAA 208
             ++  + NPL+DR  I I +  Y  ED K       +V++  +  GLA     +TD A 
Sbjct: 477 ANQLDTIPNPLRDRMEI-IEIGGY-TEDEKLGIAQGFLVRKQREFHGLAPDQLIITDAA- 533

Query: 209 CEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
                           +++ VR++   A  + + REIA
Sbjct: 534 ----------------IIKLVREYTREAGVRNLEREIA 555


>gi|312375083|gb|EFR22519.1| hypothetical protein AND_15087 [Anopheles darlingi]
          Length = 790

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 43/122 (35%), Positives = 56/122 (45%), Gaps = 19/122 (15%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFV 60
           L   V  +  DI++    T E+  G  EA   LK  +E  K   +  +        VL V
Sbjct: 333 LGNQVEVDPEDITV----TFEDVKGCDEAKQELKEVVEFLKNPGKFSNLGGKLPKGVLLV 388

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFID 112
           GPPG GKT LA+ VA E GV F   +GP      V   A  +  L    ++R   V+FID
Sbjct: 389 GPPGTGKTLLARAVAGEAGVPFFHAAGPEFDEVLVGQGARRVRDLFKAAKERAPCVIFID 448

Query: 113 EI 114
           EI
Sbjct: 449 EI 450


>gi|308509910|ref|XP_003117138.1| CRE-CDC-48.1 protein [Caenorhabditis remanei]
 gi|308242052|gb|EFO86004.1| CRE-CDC-48.1 protein [Caenorhabditis remanei]
          Length = 809

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 520 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCV 579

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 580 LFFDELDSIA 589



 Score = 38.1 bits (87), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-----AGDLAALLTNLEDRD--V 108
           +L  GPPG GKT +A+ VA E G  F   +GP V++K       +L       E     +
Sbjct: 247 ILLFGPPGTGKTLIARAVANETGSFFFLINGPEVMSKMSGESESNLRKAFEECEKNQPAI 306

Query: 109 LFIDEI 114
           LFIDEI
Sbjct: 307 LFIDEI 312


>gi|296417719|ref|XP_002838500.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295634439|emb|CAZ82691.1| unnamed protein product [Tuber melanosporum]
          Length = 609

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 34/72 (47%), Gaps = 3/72 (4%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           AD+  L+    E     V    N +VF   A     A   VL  GPPG GKT LA+ VA 
Sbjct: 327 ADVGALKSHKAELQMAIVLPIKNPEVF---ASVGLTAPSGVLLWGPPGCGKTLLAKAVAN 383

Query: 77  ELGVNFRSTSGP 88
           E G NF S  GP
Sbjct: 384 ESGANFISIQGP 395



 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK---AGDLAALLTNLED-RDV---- 108
           VL  GPPG GK  LA  ++RELG+ F + S P I      G    +    ED R++    
Sbjct: 86  VLLHGPPGCGKNMLANAISRELGLPFIAISAPSIVSRMYGGSEKMIREIFEDAREIAPCL 145

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 146 IFIDEI 151


>gi|222528657|ref|YP_002572539.1| ATP-dependent metalloprotease FtsH [Caldicellulosiruptor bescii DSM
           6725]
 gi|310943117|sp|B9MPK5|FTSH_ANATD RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|222455504|gb|ACM59766.1| ATP-dependent metalloprotease FtsH [Caldicellulosiruptor bescii DSM
           6725]
          Length = 616

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 48/95 (50%), Gaps = 11/95 (11%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           EE    ++   N + +IE     A     +L VGPPG GKT LA+ VA E GV F S SG
Sbjct: 178 EELKEVIDFLKNPRKYIELG---ARIPKGILLVGPPGTGKTLLAKAVAGEAGVPFFSISG 234

Query: 88  PVIAK--AGDLAALLTNLEDRD------VLFIDEI 114
               +   G  AA + +L D+       V+FIDEI
Sbjct: 235 SDFVEMFVGVGAARVRDLFDQAKRNAPCVVFIDEI 269


>gi|164428754|ref|XP_957005.2| cell division cycle protein 48 [Neurospora crassa OR74A]
 gi|157072266|gb|EAA27769.2| cell division cycle protein 48 [Neurospora crassa OR74A]
          Length = 759

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ VA E   NF S  GP
Sbjct: 470 VLFYGPPGTGKTMLAKAVANECAANFISVKGP 501



 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           VL  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 196 VLLYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 255

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 256 IFIDEIDSIA 265


>gi|151945136|gb|EDN63387.1| replication factor C subunit 2 [Saccharomyces cerevisiae YJM789]
 gi|256273083|gb|EEU08038.1| Rfc2p [Saccharomyces cerevisiae JAY291]
 gi|259147531|emb|CAY80782.1| Rfc2p [Saccharomyces cerevisiae EC1118]
 gi|323336956|gb|EGA78213.1| Rfc2p [Saccharomyces cerevisiae Vin13]
 gi|323347871|gb|EGA82132.1| Rfc2p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 353

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+ L+E T Q  A + LK  +++A      L H+LF GPPG GKT+    + +EL
Sbjct: 32 RPKNLDEVTAQDHAVTVLKKTLKSAN-----LPHMLFYGPPGTGKTSTILALTKEL 82


>gi|115816457|ref|XP_801708.2| PREDICTED: similar to Valosin containing protein isoform 2, partial
           [Strongylocentrotus purpuratus]
 gi|115970724|ref|XP_001186005.1| PREDICTED: similar to Valosin containing protein, partial
           [Strongylocentrotus purpuratus]
          Length = 537

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 243 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARQAAPCV 302

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 303 LFFDELDSIA 312


>gi|72389534|ref|XP_845062.1| peroxisome assembly protein [Trypanosoma brucei TREU927]
 gi|62176745|gb|AAX70845.1| peroxisome assembly protein, putative [Trypanosoma brucei]
 gi|70801596|gb|AAZ11503.1| peroxisome assembly protein, putative [Trypanosoma brucei brucei
           strain 927/4 GUTat10.1]
          Length = 982

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 23/32 (71%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +LF GPPG GKT LA+ VA E+ +NF +  GP
Sbjct: 721 ILFYGPPGCGKTLLAKAVATEMNMNFMAVKGP 752


>gi|323308474|gb|EGA61719.1| Rfc2p [Saccharomyces cerevisiae FostersO]
          Length = 353

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+ L+E T Q  A + LK  +++A      L H+LF GPPG GKT+    + +EL
Sbjct: 32 RPKNLDEVTAQDHAVTVLKKTLKSAN-----LPHMLFYGPPGTGKTSTILALTKEL 82


>gi|302680046|ref|XP_003029705.1| hypothetical protein SCHCODRAFT_58751 [Schizophyllum commune H4-8]
 gi|300103395|gb|EFI94802.1| hypothetical protein SCHCODRAFT_58751 [Schizophyllum commune H4-8]
          Length = 724

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL  GPPG GKT LA  +A ELGV F S S P I    +G+    L +  D        +
Sbjct: 129 VLLHGPPGCGKTLLAHAIAGELGVPFISISAPSIVSGMSGESEKTLRDTFDEAKRAAPCL 188

Query: 109 LFIDEIHRLS 118
           LFIDEI  ++
Sbjct: 189 LFIDEIDAIT 198



 Score = 38.1 bits (87), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E   +F S  GP
Sbjct: 464 VLLWGPPGCGKTLLARAVANESCASFVSVKGP 495


>gi|289679161|ref|ZP_06500051.1| recombination factor protein RarA [Pseudomonas syringae pv.
          syringae FF5]
          Length = 110

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 2/65 (3%)

Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
          LR   L+E+ GQ    ++ K   EA +    AL  ++F GPPG+GKTTLA+++A+    +
Sbjct: 17 LRATNLDEYVGQEHVLAHGKPLREALEQ--GALHSMIFWGPPGVGKTTLAKLLAKVSDAH 74

Query: 82 FRSTS 86
          F + S
Sbjct: 75 FETVS 79


>gi|224140199|ref|XP_002323472.1| predicted protein [Populus trichocarpa]
 gi|222868102|gb|EEF05233.1| predicted protein [Populus trichocarpa]
          Length = 802

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 518 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCV 577

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 578 LFFDELDSIA 587



 Score = 39.3 bits (90), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 245 ILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 304

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 305 IFIDEIDSIA 314


>gi|197122546|ref|YP_002134497.1| ATP-dependent protease La [Anaeromyxobacter sp. K]
 gi|196172395|gb|ACG73368.1| ATP-dependent protease La [Anaeromyxobacter sp. K]
          Length = 835

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 93/233 (39%), Gaps = 55/233 (23%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA---GDLAALLTNLEDR------ 106
           + FVGPPG+GKT+L Q +AR  G  F R + G V  +A   G     +  L  R      
Sbjct: 376 LCFVGPPGVGKTSLGQSIARATGRKFVRLSLGGVRDEAEIRGHRRTYVGALPGRIIQSMK 435

Query: 107 ------DVLFIDEIHRL--------SIIVEEILYP----AMEDFQLDLMVGEGPSARSVK 148
                  V+ +DEI +L        S  + E+L P    A  D  LDL            
Sbjct: 436 KAGTVNPVMMLDEIDKLGADFRGDPSAALLEVLDPEQNHAFSDHYLDL-----------S 484

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ----------RGAKL 198
            +LS+   I     +  +  PL+DR  I + L  Y  E+   I Q           G   
Sbjct: 485 YDLSKVMFIGTANLLDPIPGPLKDRMEI-LELPGYTFEEKVHIAQNHLIPKQLKEHGLSA 543

Query: 199 TGLAVTDEAACEIAMRSRGTPRIAG--RLLRRVRDFAEVAHAKTITREIADAA 249
             +A+T++A  +I M      R AG   L RR+ D       +  + +I  AA
Sbjct: 544 DAIAITEKALIKIIM---AYTREAGVRNLERRIADVCRAIAVEVASGKIGAAA 593


>gi|152205934|dbj|BAF73714.1| valosin containing protein [Haemaphysalis longicornis]
          Length = 808

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 516 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCV 575

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 576 LFFDELDSIA 585



 Score = 37.0 bits (84), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT +A+ VA E G  F   +GP I
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274


>gi|90418162|ref|ZP_01226074.1| putative peptidase, M41 family [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90337834|gb|EAS51485.1| putative peptidase, M41 family [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 643

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 37/71 (52%), Gaps = 8/71 (11%)

Query: 23  RPRTLEEFTGQVEA-------CSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           RPR +E+  G  EA        ++L  + E      +     LFVGPPG GKT LAQ +A
Sbjct: 217 RPR-IEDLHGYGEAGRWALQLVADLSAYREGTIGWEDVDAGALFVGPPGTGKTLLAQAIA 275

Query: 76  RELGVNFRSTS 86
              GV+F +TS
Sbjct: 276 NSAGVHFIATS 286


>gi|6322528|ref|NP_012602.1| Rfc2p [Saccharomyces cerevisiae S288c]
 gi|730502|sp|P40348|RFC2_YEAST RecName: Full=Replication factor C subunit 2; Short=Replication
          factor C2; AltName: Full=Activator 1 41 kDa subunit
 gi|498463|dbj|BAA05858.1| Rfc2 protein [Saccharomyces cerevisiae]
 gi|841464|gb|AAC49061.1| Rfc2p [Saccharomyces cerevisiae]
 gi|1015747|emb|CAA89596.1| RFC2 [Saccharomyces cerevisiae]
 gi|1019690|gb|AAB39294.1| ORF YJR068w [Saccharomyces cerevisiae]
 gi|285812957|tpg|DAA08855.1| TPA: Rfc2p [Saccharomyces cerevisiae S288c]
          Length = 353

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+ L+E T Q  A + LK  +++A      L H+LF GPPG GKT+    + +EL
Sbjct: 32 RPKNLDEVTAQDHAVTVLKKTLKSAN-----LPHMLFYGPPGTGKTSTILALTKEL 82


>gi|255761620|gb|ACU32853.1| cell division cycle 48 protein [Toxoplasma gondii]
          Length = 806

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ VA E   NF S  GP
Sbjct: 515 VLFYGPPGCGKTLLAKAVASECSANFVSIKGP 546



 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTN-LEDRD-----V 108
           VL  GPPG GKT +A+ VA E G  F   +GP V++K AG+  + L    E+ +     +
Sbjct: 242 VLLYGPPGSGKTLIAKAVANETGAFFFLINGPEVMSKMAGEAESNLRRAFEEAEKNAPAI 301

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 302 IFIDEIDSIA 311


>gi|255540583|ref|XP_002511356.1| Transitional endoplasmic reticulum ATPase, putative [Ricinus
           communis]
 gi|223550471|gb|EEF51958.1| Transitional endoplasmic reticulum ATPase, putative [Ricinus
           communis]
          Length = 804

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 513 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCV 572

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 573 LFFDELDSIA 582



 Score = 38.1 bits (87), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 250 ILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 309

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 310 IFIDEIDSIA 319


>gi|171683235|ref|XP_001906560.1| hypothetical protein [Podospora anserina S mat+]
 gi|170941577|emb|CAP67231.1| unnamed protein product [Podospora anserina S mat+]
          Length = 551

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 19/123 (15%)

Query: 32  GQVEACSNL-KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTS---- 86
           GQ +AC +L ++F+      A+    +LF GP G GKT LAQ + + L ++ ++      
Sbjct: 249 GQTQACQSLVEIFMAQLALGADRPIILLFAGPSGHGKTELAQNMGKLLSLDLQTVDCTNL 308

Query: 87  -------GPVIAKAG-DLAALLTNLED-----RDVLFIDEIHRLSIIVEE-ILYPAMEDF 132
                  GP    AG D ++++ N  D     R ++F+DE  +    V+E +L P     
Sbjct: 309 RTSMDLFGPFFPFAGYDQSSVVNNFLDEHKSQRSIVFLDEFEKTQPNVQEALLLPFQSGL 368

Query: 133 QLD 135
            LD
Sbjct: 369 YLD 371


>gi|45269731|gb|AAS56246.1| YJR068W [Saccharomyces cerevisiae]
          Length = 353

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+ L+E T Q  A + LK  +++A      L H+LF GPPG GKT+    + +EL
Sbjct: 32 RPKNLDEVTAQDHAVTVLKKTLKSAN-----LPHMLFYGPPGTGKTSTILALTKEL 82


>gi|18414193|ref|NP_568114.1| cell division cycle protein 48, putative / CDC48, putative
           [Arabidopsis thaliana]
 gi|28201771|sp|Q9LZF6|CD48E_ARATH RecName: Full=Cell division control protein 48 homolog E;
           Short=AtCDC48e; AltName: Full=Transitional endoplasmic
           reticulum ATPase E
 gi|26449352|dbj|BAC41803.1| putative transitional endoplasmic reticulum ATPase [Arabidopsis
           thaliana]
 gi|26452166|dbj|BAC43171.1| putative transitional endoplasmic reticulum ATPase [Arabidopsis
           thaliana]
 gi|30102750|gb|AAP21293.1| At5g03340 [Arabidopsis thaliana]
 gi|332003204|gb|AED90587.1| cell division control protein 48-e [Arabidopsis thaliana]
          Length = 810

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 517 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCV 576

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 577 LFFDELDSIA 586



 Score = 39.3 bits (90), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 244 ILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 303

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 304 IFIDEIDSIA 313


>gi|312876101|ref|ZP_07736089.1| ATP-dependent metalloprotease FtsH [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311797087|gb|EFR13428.1| ATP-dependent metalloprotease FtsH [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 616

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 48/95 (50%), Gaps = 11/95 (11%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           EE    ++   N + +IE     A     +L VGPPG GKT LA+ VA E GV F S SG
Sbjct: 178 EELKEVIDFLKNPRKYIELG---ARIPKGILLVGPPGTGKTLLAKAVAGEAGVPFFSISG 234

Query: 88  PVIAK--AGDLAALLTNLEDRD------VLFIDEI 114
               +   G  AA + +L D+       V+FIDEI
Sbjct: 235 SDFVEMFVGVGAARVRDLFDQAKRNAPCVVFIDEI 269


>gi|297829516|ref|XP_002882640.1| hypothetical protein ARALYDRAFT_478309 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328480|gb|EFH58899.1| hypothetical protein ARALYDRAFT_478309 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 809

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 517 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCV 576

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 577 LFFDELDSIA 586



 Score = 39.3 bits (90), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 244 ILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 303

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 304 IFIDEIDSIA 313


>gi|297810407|ref|XP_002873087.1| hypothetical protein ARALYDRAFT_908201 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297318924|gb|EFH49346.1| hypothetical protein ARALYDRAFT_908201 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 810

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 517 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCV 576

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 577 LFFDELDSIA 586



 Score = 39.3 bits (90), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 244 ILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 303

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 304 IFIDEIDSIA 313


>gi|291279420|ref|YP_003496255.1| cell division protein FtsH [Deferribacter desulfuricans SSM1]
 gi|290754122|dbj|BAI80499.1| cell division protein FtsH [Deferribacter desulfuricans SSM1]
          Length = 613

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 38/66 (57%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL VGPPG GKT LA+ VA E GV F S SG    +   G  AA + +L D+       +
Sbjct: 190 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGAARVRDLFDQGKKHAPCI 249

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 250 IFIDEI 255


>gi|224133614|ref|XP_002321618.1| predicted protein [Populus trichocarpa]
 gi|222868614|gb|EEF05745.1| predicted protein [Populus trichocarpa]
          Length = 813

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 523 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCV 582

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 583 LFFDELDSIA 592



 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 250 ILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 309

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 310 IFIDEIDSIA 319


>gi|153956485|ref|YP_001397250.1| La-related protease [Clostridium kluyveri DSM 555]
 gi|219856788|ref|YP_002473910.1| hypothetical protein CKR_3445 [Clostridium kluyveri NBRC 12016]
 gi|146349343|gb|EDK35879.1| La-related protease [Clostridium kluyveri DSM 555]
 gi|219570512|dbj|BAH08496.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 631

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 93/239 (38%), Gaps = 62/239 (25%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           LS+N+ +      LLRP T +E  GQ  A  ++      +K  +    H++  GPPG+GK
Sbjct: 157 LSKNIQR------LLRPETFDEIIGQRRAVESI-----LSKIASPYPQHIILYGPPGVGK 205

Query: 68  TTLAQVVARE----------------------LGVNFRSTSGPVIAKAG---------DL 96
           TT A++   E                      L  + R  + P++             DL
Sbjct: 206 TTAARIALEEAKKLKFTPFNKDAKFVEVDGTTLRWDPREITNPLLGSVHDPIYQGTRRDL 265

Query: 97  A---------ALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG-EGPSARS 146
           A          L+T      VLFIDEI  L  +++  L   +ED +++       P   S
Sbjct: 266 AEGGIPEPKLGLVTEAHG-GVLFIDEIGELDEMLQNKLLKVLEDKRVEFSSSYYDPDDES 324

Query: 147 VKINL---------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA 196
           +   +         + F LI ATTR     NP        +      I+D+++IV+  A
Sbjct: 325 IPKYIKYLFDKGAPADFLLIGATTREPGEINPALRSRCTEVYFEPLSIKDIQSIVENAA 383


>gi|110289141|gb|AAP53974.2| Cell division cycle protein 48, putative, expressed [Oryza sativa
           Japonica Group]
 gi|222612898|gb|EEE51030.1| hypothetical protein OsJ_31677 [Oryza sativa Japonica Group]
          Length = 808

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 520 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCV 579

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 580 LFFDELDSIA 589



 Score = 38.1 bits (87), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 247 ILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 306

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 307 IFIDEIDSIA 316


>gi|98962497|gb|ABF59516.1| putative spindle disassembly related protein CDC48 [Nicotiana
           tabacum]
          Length = 808

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 518 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCV 577

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 578 LFFDELDSIA 587



 Score = 39.3 bits (90), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 245 ILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 304

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 305 IFIDEIDSIA 314


>gi|328950150|ref|YP_004367485.1| ATPase associated with various cellular activities AAA_3
           [Marinithermus hydrothermalis DSM 14884]
 gi|328450474|gb|AEB11375.1| ATPase associated with various cellular activities AAA_3
           [Marinithermus hydrothermalis DSM 14884]
          Length = 310

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 42/91 (46%), Gaps = 10/91 (10%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR--------- 106
           HVL    PG GKTTLA+ VAR LG+ FR           DL  +    E R         
Sbjct: 36  HVLIEDVPGTGKTTLARAVARSLGLPFRRVQFTPDLLPSDLTGVNVYREGRFHFQPGPVF 95

Query: 107 -DVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
             VL  DEI+R +   +  L  AM +FQ+ +
Sbjct: 96  TSVLLADEINRATPKTQSALLEAMAEFQVTV 126


>gi|312128219|ref|YP_003993093.1| ATP-dependent metalloprotease ftsh [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311778238|gb|ADQ07724.1| ATP-dependent metalloprotease FtsH [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 616

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 48/95 (50%), Gaps = 11/95 (11%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           EE    ++   N + +IE     A     +L VGPPG GKT LA+ VA E GV F S SG
Sbjct: 178 EELKEVIDFLKNPRKYIELG---ARIPKGILLVGPPGTGKTLLAKAVAGEAGVPFFSISG 234

Query: 88  PVIAK--AGDLAALLTNLEDRD------VLFIDEI 114
               +   G  AA + +L D+       V+FIDEI
Sbjct: 235 SDFVEMFVGVGAARVRDLFDQAKRNAPCVVFIDEI 269


>gi|302871266|ref|YP_003839902.1| ATP-dependent metalloprotease FtsH [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302574125|gb|ADL41916.1| ATP-dependent metalloprotease FtsH [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 616

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 48/95 (50%), Gaps = 11/95 (11%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           EE    ++   N + +IE     A     +L VGPPG GKT LA+ VA E GV F S SG
Sbjct: 178 EELKEVIDFLKNPRKYIELG---ARIPKGILLVGPPGTGKTLLAKAVAGEAGVPFFSISG 234

Query: 88  PVIAK--AGDLAALLTNLEDRD------VLFIDEI 114
               +   G  AA + +L D+       V+FIDEI
Sbjct: 235 SDFVEMFVGVGAARVRDLFDQAKRNSPCVVFIDEI 269


>gi|237831105|ref|XP_002364850.1| peroxisomal-type ATPase, putative [Toxoplasma gondii ME49]
 gi|211962514|gb|EEA97709.1| peroxisomal-type ATPase, putative [Toxoplasma gondii ME49]
          Length = 705

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT LA+ VA E GVNF S  GP
Sbjct: 472 ILLFGPPGTGKTLLAKAVATECGVNFISVKGP 503


>gi|207347038|gb|EDZ73351.1| YDL126Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 724

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ VA E+  NF S  GP
Sbjct: 524 VLFYGPPGTGKTLLAKAVATEVSANFISVKGP 555



 Score = 38.5 bits (88), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTN-LEDRD-----V 108
           VL  GPPG GKT +A+ VA E G  F   +GP V++K AG+  + L    E+ +     +
Sbjct: 251 VLMYGPPGTGKTLMARAVANETGAFFFLINGPEVMSKMAGESESNLRKAFEEAEKNAPAI 310

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 311 IFIDEIDSIA 320


>gi|15232776|ref|NP_187595.1| CDC48 (CELL DIVISION CYCLE 48); ATPase/ identical protein binding
           [Arabidopsis thaliana]
 gi|1705677|sp|P54609|CD48A_ARATH RecName: Full=Cell division control protein 48 homolog A;
           Short=AtCDC48a
 gi|6681343|gb|AAF23260.1|AC015985_18 putative transitional endoplasmic reticulum ATPase [Arabidopsis
           thaliana]
 gi|1019904|gb|AAC49120.1| cell division cycle protein [Arabidopsis thaliana]
 gi|17473551|gb|AAL38252.1| putative transitional endoplasmic reticulum ATPase [Arabidopsis
           thaliana]
 gi|20453130|gb|AAM19807.1| AT3g09840/F8A24_11 [Arabidopsis thaliana]
 gi|110735114|gb|ABG89127.1| CDC48a [synthetic construct]
 gi|222424942|dbj|BAH20422.1| AT3G09840 [Arabidopsis thaliana]
 gi|332641299|gb|AEE74820.1| cell division control protein 48-A [Arabidopsis thaliana]
          Length = 809

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 517 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCV 576

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 577 LFFDELDSIA 586



 Score = 39.3 bits (90), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 244 ILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 303

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 304 IFIDEIDSIA 313


>gi|323304258|gb|EGA58032.1| Rfc2p [Saccharomyces cerevisiae FostersB]
          Length = 348

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 5/60 (8%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          +   RP+ L+E T Q  A + LK  +++A      L H+LF GPPG GKT+    + +EL
Sbjct: 28 VEKYRPKNLDEVTAQDHAVTVLKKTLKSAN-----LPHMLFYGPPGTGKTSTILALTKEL 82


>gi|320581211|gb|EFW95432.1| DNA replication factor C [Pichia angusta DL-1]
          Length = 325

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 6/63 (9%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81
          RP  L++  GQ +    ++ F     A+   + H+LF GPPG GKT+    +AREL G N
Sbjct: 13 RPAKLDDVYGQKDVVQTVRKF-----AKEGRIPHLLFYGPPGTGKTSTIIALARELYGKN 67

Query: 82 FRS 84
          +R+
Sbjct: 68 YRN 70


>gi|224047252|ref|XP_002194423.1| PREDICTED: nuclear VCP-like [Taeniopygia guttata]
          Length = 857

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E G+NF S  GP
Sbjct: 619 VLLAGPPGCGKTLLAKAVANESGLNFISVKGP 650


>gi|185177972|pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
 gi|185177973|pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
 gi|185177974|pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
 gi|185177975|pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
 gi|185177976|pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
 gi|185177977|pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
 gi|185177978|pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
 gi|185177979|pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
 gi|185177980|pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
 gi|185177981|pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
 gi|185177982|pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
 gi|185177983|pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
 gi|185177984|pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
 gi|185177985|pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
          Length = 301

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 52  VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 111

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 112 LFFDELDSIA 121


>gi|189485257|ref|YP_001956198.1| ATP-dependent Clp protease ATP-binding subunit X [uncultured
           Termite group 1 bacterium phylotype Rs-D17]
 gi|170287216|dbj|BAG13737.1| ATP-dependent Clp protease ATP-binding subunit X [uncultured
           Termite group 1 bacterium phylotype Rs-D17]
          Length = 412

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 67/143 (46%), Gaps = 32/143 (22%)

Query: 8   LSRNVSQEDADISLLR---PRTLEEF-----TGQVEACSNLKVFIEAAKARAEAL----- 54
           L  N++++++  ++LR   P  L+ F      GQ  A   L V +     R EA+     
Sbjct: 40  LFENLNKKESKETMLRLPKPGELKRFLDAYVIGQEHAKKILSVAVYNHYKRLEAIVSKDD 99

Query: 55  -----DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------ 103
                 +VL +GP G GKT LAQ +A+ L V F  +   V+ +AG +   + N+      
Sbjct: 100 VELQKSNVLLIGPTGAGKTLLAQTLAKILDVPFAISDATVLTEAGYVGEDVENILLRLIQ 159

Query: 104 --------EDRDVLFIDEIHRLS 118
                    ++ +++IDEI ++S
Sbjct: 160 NASFDIRKAEKGIIYIDEIDKIS 182


>gi|325091041|gb|EGC44351.1| cell division control protein [Ajellomyces capsulatus H88]
          Length = 771

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ VA E   NF S  GP
Sbjct: 482 VLFYGPPGTGKTLLAKAVANECAANFISVKGP 513



 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 257 ILMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 316

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 317 IFIDEIDSIA 326


>gi|323359782|ref|YP_004226178.1| ATP-dependent protease Clp, ATPase subunit [Microbacterium
           testaceum StLB037]
 gi|323276153|dbj|BAJ76298.1| ATP-dependent protease Clp, ATPase subunit [Microbacterium
           testaceum StLB037]
          Length = 422

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 69/147 (46%), Gaps = 36/147 (24%)

Query: 8   LSRNVSQEDADISLLRPRT----LEEFT-GQVEACSNLKVFI-------------EAAKA 49
           ++ + + E A+  L +PR     LEE+  GQ  A   L V +             + A+A
Sbjct: 50  MAESSAGEVAEFDLPKPREIFSFLEEYVVGQEPAKRALAVAVYNHYKRVRSHGTLQPAEA 109

Query: 50  RAEALD----HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-- 103
           RAE +D    ++L +GP G GKT LAQ +A+ L V F       + +AG +   + N+  
Sbjct: 110 RAEEIDIAKSNILLLGPTGCGKTYLAQTLAKRLNVPFAVADATALTEAGYVGEDVENILL 169

Query: 104 -----EDRDV-------LFIDEIHRLS 118
                 D DV       ++IDE+ +++
Sbjct: 170 KLLQAADFDVKRAETGIIYIDEVDKIA 196


>gi|320591119|gb|EFX03558.1| cell division control protein cdc48 [Grosmannia clavigera kw1407]
          Length = 828

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ VA E   NF S  GP
Sbjct: 536 VLFYGPPGTGKTLLAKAVANECAANFISVKGP 567



 Score = 38.5 bits (88), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           VL  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 262 VLLFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 321

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 322 IFIDEIDSIA 331


>gi|294776010|ref|ZP_06741506.1| putative ATP-dependent Clp protease ATP-binding subunit ClpA
           [Bacteroides vulgatus PC510]
 gi|294450148|gb|EFG18652.1| putative ATP-dependent Clp protease ATP-binding subunit ClpA
           [Bacteroides vulgatus PC510]
          Length = 742

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 4/71 (5%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKA----RAEALDHVLFVGPPGLGKTT 69
           +++A +  L  R   +  GQ EA   +   ++ AKA      + L  +LFVGP G+GKT 
Sbjct: 438 EDNATLETLHERISAKIYGQEEAVCQVVEAVQMAKAGLLDENKPLASLLFVGPTGVGKTE 497

Query: 70  LAQVVARELGV 80
           +A+V+A ELG+
Sbjct: 498 VAKVLASELGI 508


>gi|242036895|ref|XP_002465842.1| hypothetical protein SORBIDRAFT_01g046840 [Sorghum bicolor]
 gi|241919696|gb|EER92840.1| hypothetical protein SORBIDRAFT_01g046840 [Sorghum bicolor]
          Length = 810

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 519 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCV 578

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 579 LFFDELDSIA 588



 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 246 ILLFGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 305

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 306 IFIDEIDSIA 315


>gi|255556934|ref|XP_002519500.1| Transitional endoplasmic reticulum ATPase, putative [Ricinus
           communis]
 gi|223541363|gb|EEF42914.1| Transitional endoplasmic reticulum ATPase, putative [Ricinus
           communis]
          Length = 806

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 518 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCV 577

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 578 LFFDELDSIA 587



 Score = 39.3 bits (90), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 245 ILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 304

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 305 IFIDEIDSIA 314


>gi|224121826|ref|XP_002318682.1| predicted protein [Populus trichocarpa]
 gi|222859355|gb|EEE96902.1| predicted protein [Populus trichocarpa]
          Length = 799

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 509 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCV 568

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 569 LFFDELDSIA 578



 Score = 37.0 bits (84), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 236 ILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 295

Query: 109 LFIDEIHRLS 118
           +FIDE+  ++
Sbjct: 296 IFIDELDSIA 305


>gi|115450773|ref|NP_001048987.1| Os03g0151800 [Oryza sativa Japonica Group]
 gi|108706222|gb|ABF94017.1| Cell division cycle protein 48, putative, expressed [Oryza sativa
           Japonica Group]
 gi|113547458|dbj|BAF10901.1| Os03g0151800 [Oryza sativa Japonica Group]
 gi|125542437|gb|EAY88576.1| hypothetical protein OsI_10049 [Oryza sativa Indica Group]
 gi|125584947|gb|EAZ25611.1| hypothetical protein OsJ_09438 [Oryza sativa Japonica Group]
 gi|215704352|dbj|BAG93786.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215704409|dbj|BAG93843.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215704637|dbj|BAG94265.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215704711|dbj|BAG94339.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 809

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 520 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCV 579

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 580 LFFDELDSIA 589



 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 247 ILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 306

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 307 IFIDEIDSIA 316


>gi|50513624|pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
          (Replication Factor C, Rfc) Bound To The Dna Sliding
          Clamp (Proliferating Cell Nuclear Antigen, Pcna)
          Length = 353

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+ L+E T Q  A + LK  +++A      L H+LF GPPG GKT+    + +EL
Sbjct: 32 RPKNLDEVTAQDHAVTVLKKTLKSAN-----LPHMLFYGPPGTGKTSTILALTKEL 82


>gi|11265361|pir||T48355 transitional endoplasmic reticulum ATPase - Arabidopsis thaliana
 gi|7378614|emb|CAB83290.1| transitional endoplasmic reticulum ATPase [Arabidopsis thaliana]
          Length = 843

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 550 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCV 609

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 610 LFFDELDSIA 619



 Score = 39.3 bits (90), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 277 ILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 336

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 337 IFIDEIDSIA 346


>gi|330834114|ref|YP_004408842.1| replication factor C large subunit [Metallosphaera cuprina Ar-4]
 gi|329566253|gb|AEB94358.1| replication factor C large subunit [Metallosphaera cuprina Ar-4]
          Length = 437

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 16/104 (15%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV-- 80
           RP +L+E   Q +    L+ +I++          VL  GPPG+GKTT+A  +A+  G+  
Sbjct: 10  RPNSLDEIENQEDVKEELRSWIDSWIKGKPNYKSVLLYGPPGIGKTTMALALAKSYGLEI 69

Query: 81  ---------NFRSTSGPVIAKAGDLAALLTNLEDR-DVLFIDEI 114
                    N  S  G +  KA    +L +   DR  ++F+DEI
Sbjct: 70  IEMNASDTRNVTSLRG-IAEKASVTGSLFS---DRGKLIFLDEI 109


>gi|312623034|ref|YP_004024647.1| ATP-dependent metalloprotease ftsh [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203501|gb|ADQ46828.1| ATP-dependent metalloprotease FtsH [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 616

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 48/95 (50%), Gaps = 11/95 (11%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           EE    ++   N + +IE     A     +L VGPPG GKT LA+ VA E GV F S SG
Sbjct: 178 EELKEVIDFLKNPRKYIELG---ARIPKGILLVGPPGTGKTLLAKAVAGEAGVPFFSISG 234

Query: 88  PVIAK--AGDLAALLTNLEDRD------VLFIDEI 114
               +   G  AA + +L D+       V+FIDEI
Sbjct: 235 SDFVEMFVGVGAARVRDLFDQAKRNAPCVVFIDEI 269


>gi|194227313|ref|XP_001489788.2| PREDICTED: similar to Nuclear valosin-containing protein-like
           (Nuclear VCP-like protein) (NVLp) [Equus caballus]
          Length = 1175

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E G+NF S  GP
Sbjct: 618 VLLAGPPGCGKTLLAKAVANESGLNFISVKGP 649


>gi|147782460|emb|CAN61919.1| hypothetical protein VITISV_038729 [Vitis vinifera]
          Length = 802

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 511 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCV 570

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 571 LFFDELDSIA 580



 Score = 37.0 bits (84), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 238 ILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 297

Query: 109 LFIDEIHRLS 118
           +FIDE+  ++
Sbjct: 298 IFIDELDSIA 307


>gi|261328426|emb|CBH11403.1| peroxisome assembly protein, putative [Trypanosoma brucei gambiense
           DAL972]
          Length = 981

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 23/32 (71%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +LF GPPG GKT LA+ VA E+ +NF +  GP
Sbjct: 720 ILFYGPPGCGKTLLAKAVATEMNMNFMAVKGP 751


>gi|258566938|ref|XP_002584213.1| cell division cycle protein 48 [Uncinocarpus reesii 1704]
 gi|237905659|gb|EEP80060.1| cell division cycle protein 48 [Uncinocarpus reesii 1704]
          Length = 806

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ VA E   NF S  GP
Sbjct: 523 VLFYGPPGTGKTLLAKAVANECAANFISVKGP 554



 Score = 38.1 bits (87), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 249 ILMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 308

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 309 IFIDEIDSIA 318


>gi|145591415|ref|YP_001153417.1| ATPase [Pyrobaculum arsenaticum DSM 13514]
 gi|145283183|gb|ABP50765.1| ATPase associated with various cellular activities, AAA_3
          [Pyrobaculum arsenaticum DSM 13514]
          Length = 302

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 36/59 (61%), Gaps = 6/59 (10%)

Query: 25 RTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFR 83
          + L +F   V    NLK+ + A  A      HVLF  PPGLGKTTLA+++A+ LG+ F+
Sbjct: 6  QVLSQF--YVTDVENLKLILAAVVAGG----HVLFNDPPGLGKTTLAKLLAKSLGLVFK 58


>gi|7522545|pir||T11652 probable transitional endoplasmic reticulum ATPase - fission yeast
           (Schizosaccharomyces pombe) (fragment)
          Length = 432

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ +A E   NF S  GP
Sbjct: 151 VLFFGPPGTGKTLLAKAIANECSANFISVKGP 182


>gi|114332440|ref|YP_748662.1| recombination factor protein RarA [Nitrosomonas eutropha C91]
 gi|114309454|gb|ABI60697.1| Recombination protein MgsA [Nitrosomonas eutropha C91]
          Length = 438

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 23/155 (14%)

Query: 22  LRPRTLEEFTGQVE---ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+TL+   GQ     +   L++   + K  +     ++  GPPG GKTTLA+++A+  
Sbjct: 18  LRPQTLDNVIGQPHLLGSGKPLRLAFISGKPHS-----MILWGPPGSGKTTLARLMAQAF 72

Query: 79  GVNFRSTSGPVIAKAGDLAA-------LLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V++   D+          L +     +LF+DE+HR +   ++   P +E 
Sbjct: 73  DTEFIAISA-VLSGVKDIREAIERARFALQHTGRSTLLFVDEVHRFNKAQQDAFLPHVEQ 131

Query: 132 FQLDLMVGEGPSARSVKIN---LSR---FTLIAAT 160
             L   +G      S ++N   LSR   +TL A T
Sbjct: 132 -GLITFIGATTENPSFEVNGALLSRAQVYTLNALT 165


>gi|332982883|ref|YP_004464324.1| ATP-dependent metalloprotease FtsH [Mahella australiensis 50-1 BON]
 gi|332700561|gb|AEE97502.1| ATP-dependent metalloprotease FtsH [Mahella australiensis 50-1 BON]
          Length = 595

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 59/118 (50%), Gaps = 12/118 (10%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEA----AKARAEALDHVLFVGPPGLGK 67
           V  +D DIS+++  ++       E+ + L  FI+     AK  A     V+  GPPG GK
Sbjct: 142 VKPKDEDISVVKFDSVAGNQEAKESLAELVDFIKEPEKYAKYGARIPRGVILYGPPGTGK 201

Query: 68  TTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNL------EDRDVLFIDEIHRL 117
           T LA+ +A E GV F + SG   V    G  AA + +L      + + V+FIDEI  L
Sbjct: 202 TLLARALAGEAGVPFYAVSGSDFVQMYVGVGAARIRSLFKKAREQGKCVIFIDEIDAL 259


>gi|308510670|ref|XP_003117518.1| CRE-CDC-48.2 protein [Caenorhabditis remanei]
 gi|308242432|gb|EFO86384.1| CRE-CDC-48.2 protein [Caenorhabditis remanei]
          Length = 812

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 519 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCV 578

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 579 LFFDELDSIA 588



 Score = 38.9 bits (89), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLEDRD--V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I          +L       E     +
Sbjct: 246 ILLFGPPGTGKTLIARAVANETGAFFFLINGPEIMSKMSGESESNLRKAFAECEKNSPAI 305

Query: 109 LFIDEIHRLS 118
           LFIDEI  ++
Sbjct: 306 LFIDEIDAIA 315


>gi|225456951|ref|XP_002281671.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297733738|emb|CBI14985.3| unnamed protein product [Vitis vinifera]
          Length = 814

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 523 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCV 582

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 583 LFFDELDSIA 592



 Score = 37.0 bits (84), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 250 ILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 309

Query: 109 LFIDEIHRLS 118
           +FIDE+  ++
Sbjct: 310 IFIDELDSIA 319


>gi|255556938|ref|XP_002519502.1| Transitional endoplasmic reticulum ATPase, putative [Ricinus
           communis]
 gi|223541365|gb|EEF42916.1| Transitional endoplasmic reticulum ATPase, putative [Ricinus
           communis]
          Length = 805

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 518 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCV 577

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 578 LFFDELDSIA 587



 Score = 39.3 bits (90), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 245 ILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 304

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 305 IFIDEIDSIA 314


>gi|254168540|ref|ZP_04875384.1| AAA family ATPase, CDC48 subfamily [Aciduliprofundum boonei T469]
 gi|197622595|gb|EDY35166.1| AAA family ATPase, CDC48 subfamily [Aciduliprofundum boonei T469]
          Length = 727

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 55/127 (43%), Gaps = 19/127 (14%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLF 59
           +S   ++E   IS++   T E+  G  E    ++  +E      E  +         VL 
Sbjct: 165 ISEKPAKESQGISMV---TYEDIGGLKEEIKKIREMVELPLRHPELFERLGIEPPKGVLL 221

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFI 111
            GPPG GKT LA+ VA E   +F   SGP I          +L  +    +D    ++FI
Sbjct: 222 YGPPGTGKTLLAKAVANEANAHFIYLSGPEIMSKFYGQSEENLREIFKEAQDNAPSIIFI 281

Query: 112 DEIHRLS 118
           DEI  ++
Sbjct: 282 DEIDSIA 288



 Score = 39.7 bits (91), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 492 ILLYGPPGTGKTLLAKAVATESEANFISVKGP 523


>gi|17532375|ref|NP_495705.1| Cell Division Cycle related family member (cdc-48.2)
           [Caenorhabditis elegans]
 gi|6226902|sp|P54812|TERA2_CAEEL RecName: Full=Transitional endoplasmic reticulum ATPase homolog 2;
           AltName: Full=Cell division cycle-related protein 48.2;
           AltName: Full=p97/CDC48 homolog 2
 gi|3874892|emb|CAA88105.1| C. elegans protein C41C4.8, confirmed by transcript evidence
           [Caenorhabditis elegans]
 gi|3875715|emb|CAA88314.1| C. elegans protein C41C4.8, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 810

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 519 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCV 578

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 579 LFFDELDSIA 588



 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLEDRD--V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I          +L       E     +
Sbjct: 246 ILLFGPPGTGKTLIARAVANETGAFFFLINGPEIMSKMSGESESNLRKAFAECEKNSPAI 305

Query: 109 LFIDEIHRLS 118
           LFIDEI  ++
Sbjct: 306 LFIDEIDAIA 315


>gi|15669688|ref|NP_248501.1| AAA ATPase family protein [Methanocaldococcus jannaschii DSM 2661]
 gi|3915816|sp|Q58889|PRS2_METJA RecName: Full=Putative 26S protease regulatory subunit homolog
           MJ1494
 gi|2826420|gb|AAB99505.1| AAA superfamily ATPase, similar to FtsH [Methanocaldococcus
           jannaschii DSM 2661]
          Length = 371

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 48/100 (48%), Gaps = 12/100 (12%)

Query: 27  LEEFTGQVEA---CSNLKVFIEAAKARAE-ALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
             E  GQ EA   C  +  ++E  K   E A  +VLF GPPG GKT +A+ +A E   +F
Sbjct: 123 FSEIIGQEEAKKKCRIIMKYLENPKLFGEWAPKNVLFYGPPGTGKTLMARALATETNSSF 182

Query: 83  RSTSGPVI--AKAGDLAALLTNLEDRD------VLFIDEI 114
                P +     GD + ++  L  R       ++FIDE+
Sbjct: 183 ILVKAPELIGEHVGDASKMIRELYQRASESAPCIVFIDEL 222


>gi|150003220|ref|YP_001297964.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Bacteroides
           vulgatus ATCC 8482]
 gi|149931644|gb|ABR38342.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Bacteroides
           vulgatus ATCC 8482]
          Length = 742

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 4/71 (5%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKA----RAEALDHVLFVGPPGLGKTT 69
           +++A +  L  R   +  GQ EA   +   ++ AKA      + L  +LFVGP G+GKT 
Sbjct: 438 EDNATLETLHERISAKIYGQEEAVCQVVEAVQMAKAGLLDENKPLASLLFVGPTGVGKTE 497

Query: 70  LAQVVARELGV 80
           +A+V+A ELG+
Sbjct: 498 VAKVLASELGI 508


>gi|2492504|sp|Q96372|CDC48_CAPAN RecName: Full=Cell division cycle protein 48 homolog
 gi|1669660|emb|CAA70565.1| protein of AAA family [Capsicum annuum]
          Length = 805

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 518 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCV 577

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 578 LFFDELDSIA 587



 Score = 39.3 bits (90), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 245 ILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 304

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 305 IFIDEIDSIA 314


>gi|328792628|ref|XP_392908.4| PREDICTED: ATPase WRNIP1-like isoform 1 [Apis mellifera]
          Length = 528

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 68/152 (44%), Gaps = 21/152 (13%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP TL  + GQ+       +  +        + +++  GPPG GKT+LA V+A    + 
Sbjct: 109 MRPTTLLGYVGQLHILGPSTILYQLLNKFE--IPNIILWGPPGCGKTSLANVIAH---IC 163

Query: 82  FRSTSGPV-----------IAKAGDLAALLTN---LEDRDVLFIDEIHRLSIIVEEILYP 127
              ++G +           + +  ++  + TN      R V+F+DEIHR +   +++  P
Sbjct: 164 KTKSNGKIRYVKLSAAMAGVNEVKEIITIATNELKFNRRTVVFMDEIHRFNKNQQDVFLP 223

Query: 128 AMEDFQLDLM--VGEGPSARSVKINLSRFTLI 157
            +E   + L+    E PS       LSR  +I
Sbjct: 224 HVESGIITLVGATTENPSFSLNSALLSRCRVI 255


>gi|291191038|pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
          Terminal Aaa-Atpase Domain
          Length = 274

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
          VL  GPPG GKT LA+ VA E G+NF S  GP
Sbjct: 47 VLLAGPPGCGKTLLAKAVANESGLNFISVKGP 78


>gi|222526350|ref|YP_002570821.1| ATP-dependent protease La [Chloroflexus sp. Y-400-fl]
 gi|222450229|gb|ACM54495.1| ATP-dependent protease La [Chloroflexus sp. Y-400-fl]
          Length = 825

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 94/218 (43%), Gaps = 47/218 (21%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           + FVGPPG+GKT+L + +AR LG  F R++ G V  +A              G +   + 
Sbjct: 371 LCFVGPPGVGKTSLGRSIARALGRKFVRTSLGGVRDEAEIRGHRRTYIGALPGRIIQAMK 430

Query: 102 NLEDRDVLFI-DEIHRLSIIVE--------EILYP----AMEDFQLDLMVGEGPSARSVK 148
             + R  ++I DE+ ++ I           E+L P    A  D  L+L            
Sbjct: 431 TAKSRSPVYILDEVDKIGIDFRGDPTSALLEVLDPEQNNAFSDHYLEL-----------P 479

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAA 208
            +LS+   IA   ++  +  PL+DR  I I ++ Y  ED K  + R     G  +  +  
Sbjct: 480 FDLSKVIFIATANQLEPIPLPLRDRMEI-IEISGY-TEDEKMEIAR-----GFLIPKQRE 532

Query: 209 CEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
               +R        G +++ +R++   A  + + REIA
Sbjct: 533 FH-GLREDQIEFTDGAIIKLIREYTREAGVRGLEREIA 569


>gi|6807907|emb|CAB70717.1| hypothetical protein [Homo sapiens]
          Length = 431

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 139 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 198

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 199 LFFDELDSIA 208


>gi|321461136|gb|EFX72171.1| hypothetical protein DAPPUDRAFT_308570 [Daphnia pulex]
          Length = 802

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 512 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCV 571

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 572 LFFDELDSIA 581



 Score = 37.4 bits (85), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 239 ILLFGPPGTGKTLIARAVANETGAFFYLINGPEIMSKLAGESESNLRKAFEEAEKNSPAI 298

Query: 109 LFIDEI 114
           +FIDE+
Sbjct: 299 IFIDEL 304


>gi|256810841|ref|YP_003128210.1| AAA ATPase central domain protein [Methanocaldococcus fervens AG86]
 gi|256794041|gb|ACV24710.1| AAA ATPase central domain protein [Methanocaldococcus fervens AG86]
          Length = 371

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 48/100 (48%), Gaps = 12/100 (12%)

Query: 27  LEEFTGQVEA---CSNLKVFIEAAKARAE-ALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
             E  GQ EA   C  +  ++E  K   E A  +VLF GPPG GKT +A+ +A E   +F
Sbjct: 123 FSEIIGQEEAKKKCRIIMKYLENPKLFGEWAPKNVLFYGPPGTGKTLMARALATETNSSF 182

Query: 83  RSTSGPVI--AKAGDLAALLTNLEDRD------VLFIDEI 114
                P +     GD + ++  L  R       ++FIDE+
Sbjct: 183 ILVKAPELIGEHVGDASKMIRELYQRASESAPCIVFIDEL 222


>gi|239819394|gb|ACS28251.1| cell division control protein [Nicotiana glutinosa]
          Length = 805

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 518 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCV 577

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 578 LFFDELDSIA 587



 Score = 39.3 bits (90), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 245 ILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 304

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 305 IFIDEIDSIA 314


>gi|260811638|ref|XP_002600529.1| hypothetical protein BRAFLDRAFT_276686 [Branchiostoma floridae]
 gi|229285816|gb|EEN56541.1| hypothetical protein BRAFLDRAFT_276686 [Branchiostoma floridae]
          Length = 718

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 428 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARQAAPCV 487

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 488 LFFDELDSIA 497



 Score = 38.5 bits (88), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG+GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 155 ILLYGPPGVGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 214

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 215 IFIDEIDAIA 224


>gi|159029215|emb|CAO87575.1| ftsH [Microcystis aeruginosa PCC 7806]
          Length = 654

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 40/108 (37%), Positives = 49/108 (45%), Gaps = 19/108 (17%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVA 75
           P T  +  G  EA + LK  +E  K  AE  +         VL VGPPG GKT LA+ VA
Sbjct: 200 PITFSDVAGAEEAKTELKEIVEFLK-DAERFNKIGARIPKGVLLVGPPGTGKTLLAKAVA 258

Query: 76  RELGVNFRSTS---------GPVIAKAGDLAALLTNLEDRDVLFIDEI 114
            E GV F S S         G   A+  DL A         ++FIDE+
Sbjct: 259 GEAGVTFFSISASEFVELFVGTGAARVRDLFAQAKK-NAPSIIFIDEL 305


>gi|152990129|ref|YP_001355851.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Nitratiruptor
           sp. SB155-2]
 gi|151421990|dbj|BAF69494.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Nitratiruptor
           sp. SB155-2]
          Length = 729

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 5/82 (6%)

Query: 6   GLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKA----RAEALDHVLFV 60
           GL  + V+ +D +I   L  +  E   GQ EA   L + I+ ++A      + +   LFV
Sbjct: 422 GLPPQRVTSDDLEILKNLEEKLKERVLGQEEAVEQLAMAIKRSRAGLNPPNKPIGSFLFV 481

Query: 61  GPPGLGKTTLAQVVARELGVNF 82
           GP G+GKT LA+ +AR +GV+F
Sbjct: 482 GPTGVGKTELAKELARTMGVHF 503


>gi|156094884|ref|XP_001613478.1| cell division cycle ATPase [Plasmodium vivax SaI-1]
 gi|148802352|gb|EDL43751.1| cell division cycle ATPase, putative [Plasmodium vivax]
          Length = 1089

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 8/80 (10%)

Query: 47  AKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLE 104
           AK  +     +L  GPPG GKT LA+ +A E   NF S  GP +     G+  A + +L 
Sbjct: 823 AKFNSNYNKGILLYGPPGCGKTLLAKAIANECNANFISVKGPELLTMWFGESEANVRDLF 882

Query: 105 DRD------VLFIDEIHRLS 118
           D+       ++F DEI  L+
Sbjct: 883 DKARAASPCIIFFDEIDSLA 902


>gi|119873181|ref|YP_931188.1| TIP49-like protein [Pyrobaculum islandicum DSM 4184]
 gi|119674589|gb|ABL88845.1| TBP-interacting protein TIP49 [Pyrobaculum islandicum DSM 4184]
          Length = 451

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 38/71 (53%), Gaps = 6/71 (8%)

Query: 30  FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPV 89
           F GQ EA     + ++  K    A   VL VGPPG GKT LA  +ARELG     +  P 
Sbjct: 39  FVGQTEAREAAYIVVKMIKEGKFAGKGVLIVGPPGTGKTALALGIARELG-----SETPF 93

Query: 90  IA-KAGDLAAL 99
           +A  AG++ +L
Sbjct: 94  VAISAGEIYSL 104


>gi|17537217|ref|NP_496814.1| Member of AAA family binding CED-4 family member (mac-1)
           [Caenorhabditis elegans]
 gi|14530647|emb|CAB55106.2| C. elegans protein Y48C3A.7, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 813

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT LA+ VA E G+NF S  GP
Sbjct: 571 ILLCGPPGCGKTLLAKAVANETGMNFISVKGP 602


>gi|311900327|dbj|BAJ32735.1| putative ATPase [Kitasatospora setae KM-6054]
          Length = 1124

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 80/202 (39%), Gaps = 43/202 (21%)

Query: 45   EAAKARAEALDHVLFVGPPGLGKTTLAQVVAR---ELGVNFRSTSGPVIAKA-------- 93
            EA    A    H++F GPPG GKTT+A++  R   ELGV      G ++  A        
Sbjct: 887  EAGLPTARISHHLVFAGPPGTGKTTVARLYGRLLAELGV---LPGGQLVETARADLVGRY 943

Query: 94   -GDLAALLTNLEDR---DVLFIDEIHRLS----------IIVEEILYPAMEDFQLDLMVG 139
             G  A L     DR    VLFIDE + L+              + L   MED + +++V 
Sbjct: 944  IGHTAQLTREAFDRARGGVLFIDEAYTLTPRHGSGADFGQEAVDTLMKLMEDHRDEVVV- 1002

Query: 140  EGPSARSVKINLSRFTLIAATTRVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQRGAKL 198
                A   +  +  F          L +NP L  RF   I    Y  ++L TIV R A+ 
Sbjct: 1003 ---IAAGYEDEMRHF----------LASNPGLASRFTRQIEFGHYTDDELVTIVGRHAET 1049

Query: 199  TGLAVTDEAACEIAMRSRGTPR 220
             G     +    +A      PR
Sbjct: 1050 AGYTCAPQTLTALARHFAAVPR 1071



 Score = 43.9 bits (102), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 105/279 (37%), Gaps = 55/279 (19%)

Query: 56  HVLFVGPPGLGKTTLAQVVAR---ELGVNFRS-----TSGPVIAKAGDLAALLTNLEDRD 107
           H++F GPPG GKTT+A++      ELGV         T   ++A      AL T    R 
Sbjct: 621 HLVFAGPPGTGKTTVARLYGSILAELGVLREGHLVEVTRADLVASVIGGTALKTTEVFRS 680

Query: 108 ----VLFIDEIHRLSIIVE-----------EILYPAMEDFQLDLMVGEGPSARSVKINLS 152
               VLF+DE + LS               + L   MED + D++V            ++
Sbjct: 681 ALGGVLFVDEAYTLSTGGGGSGPDFGREAVDTLVKLMEDHREDVVV----IVAGYSAEMT 736

Query: 153 RFTLIAATTRVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEI 211
            F          L  NP L  RF   +    Y +++L TIV R A   G  + D     +
Sbjct: 737 DF----------LAVNPGLASRFSRTVEFANYSVDELVTIVGRTAAGHGYELADGTGEAL 786

Query: 212 AMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA----IDKMGFDQLDLRY 267
                   R     L R  DF     A+ +  E+ D    RLA    I      QL    
Sbjct: 787 --------RALFERLPRGEDFGNGRAARKVFEEMVDRQATRLATGAEISDRDLAQLLAED 838

Query: 268 LTMIARNFGGGPVGIETIS-----AGLSEPRDAIEDLIE 301
           +   A    G   G E ++      GL   ++ +EDL++
Sbjct: 839 VAPAATRPAGRGDGTELLAELRAMVGLPAAKEQVEDLVD 877


>gi|254166928|ref|ZP_04873782.1| AAA family ATPase, CDC48 subfamily [Aciduliprofundum boonei T469]
 gi|289596082|ref|YP_003482778.1| AAA family ATPase, CDC48 subfamily [Aciduliprofundum boonei T469]
 gi|197624538|gb|EDY37099.1| AAA family ATPase, CDC48 subfamily [Aciduliprofundum boonei T469]
 gi|289533869|gb|ADD08216.1| AAA family ATPase, CDC48 subfamily [Aciduliprofundum boonei T469]
          Length = 727

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 55/127 (43%), Gaps = 19/127 (14%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLF 59
           +S   ++E   IS++   T E+  G  E    ++  +E      E  +         VL 
Sbjct: 165 ISEKPAKESQGISMV---TYEDIGGLKEEIKKIREMVELPLRHPELFERLGIEPPKGVLL 221

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFI 111
            GPPG GKT LA+ VA E   +F   SGP I          +L  +    +D    ++FI
Sbjct: 222 YGPPGTGKTLLAKAVANEANAHFIYLSGPEIMSKFYGQSEENLREIFKEAQDNAPSIIFI 281

Query: 112 DEIHRLS 118
           DEI  ++
Sbjct: 282 DEIDSIA 288



 Score = 39.7 bits (91), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 492 ILLYGPPGTGKTLLAKAVATESEANFISVKGP 523


>gi|225440045|ref|XP_002282146.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297741633|emb|CBI32765.3| unnamed protein product [Vitis vinifera]
          Length = 806

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 518 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCV 577

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 578 LFFDELDSIA 587



 Score = 39.3 bits (90), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 245 ILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 304

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 305 IFIDEIDSIA 314


>gi|150401783|ref|YP_001325549.1| replication factor C large subunit [Methanococcus aeolicus
          Nankai-3]
 gi|166225152|sp|A6UWR5|RFCL_META3 RecName: Full=Replication factor C large subunit; Short=RFC large
          subunit; AltName: Full=Clamp loader large subunit
 gi|150014486|gb|ABR56937.1| AAA ATPase central domain protein [Methanococcus aeolicus
          Nankai-3]
          Length = 474

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          +   RP+T+ E  G  +    LK +IE      E    VL VGPPG GKTTL   +A + 
Sbjct: 4  VEKYRPKTMSEIVGNNKIKEELKNWIEEI-LHNEIPKPVLLVGPPGCGKTTLTNALANDY 62

Query: 79 G 79
          G
Sbjct: 63 G 63


>gi|146304798|ref|YP_001192114.1| replication factor C small subunit [Metallosphaera sedula DSM
          5348]
 gi|145703048|gb|ABP96190.1| replication factor C small subunit [Metallosphaera sedula DSM
          5348]
          Length = 326

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 6/61 (9%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81
          RPR+L++   Q +    LK F+     + + + H+LF GPPG GKTT A  +  +L G N
Sbjct: 12 RPRSLDDIVNQRDIVERLKHFV-----KEKNMPHLLFAGPPGTGKTTSALALVHDLYGEN 66

Query: 82 F 82
          +
Sbjct: 67 Y 67


>gi|11095437|gb|AAG29874.1| valosin-containing protein [Homo sapiens]
          Length = 305

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP  +    G+  A +  + D+       V
Sbjct: 142 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 201

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 202 LFFDELDSIA 211


>gi|2127780|pir||E64486 ATP-dependent 26S proteosome regulatory subunit 8 homolog -
           Methanococcus jannaschii
          Length = 373

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 48/100 (48%), Gaps = 12/100 (12%)

Query: 27  LEEFTGQVEA---CSNLKVFIEAAKARAE-ALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
             E  GQ EA   C  +  ++E  K   E A  +VLF GPPG GKT +A+ +A E   +F
Sbjct: 125 FSEIIGQEEAKKKCRIIMKYLENPKLFGEWAPKNVLFYGPPGTGKTLMARALATETNSSF 184

Query: 83  RSTSGPVI--AKAGDLAALLTNLEDRD------VLFIDEI 114
                P +     GD + ++  L  R       ++FIDE+
Sbjct: 185 ILVKAPELIGEHVGDASKMIRELYQRASESAPCIVFIDEL 224


>gi|320100449|ref|YP_004176041.1| AAA family ATPase, CDC48 subfamily [Desulfurococcus mucosus DSM
           2162]
 gi|319752801|gb|ADV64559.1| AAA family ATPase, CDC48 subfamily [Desulfurococcus mucosus DSM
           2162]
          Length = 746

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 52/120 (43%), Gaps = 26/120 (21%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
           T E+     EA   ++  +E      E  +H        +L  GPPG GKT LA+ +A E
Sbjct: 186 TWEDIGDLEEAKQKIREIVELPMKYPELFEHLGIEPPKGILLYGPPGTGKTLLAKALANE 245

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDR-------------DVLFIDEIHRLSIIVEEI 124
           +G  F + +GP I     ++      E+R              V+FIDEI  ++   EE+
Sbjct: 246 IGAYFITINGPEI-----MSKFYGESEERLRKIFEEAQANAPAVIFIDEIDSIAPKREEV 300



 Score = 40.0 bits (92), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDR------DV 108
           +L  GPPG GKT LA+ VA E G NF +  GP V++K  G+    +  +  R       V
Sbjct: 501 ILLFGPPGTGKTLLAKAVATESGANFIAIRGPEVLSKWVGESEKAIRQIFRRARMVAPAV 560

Query: 109 LFIDEIHRLS 118
           +F DEI  ++
Sbjct: 561 VFFDEIDSIA 570


>gi|316965784|gb|EFV50458.1| putative ATPase, AAA family [Trichinella spiralis]
          Length = 781

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT LA+ +A E G+NF S  GP
Sbjct: 442 ILLFGPPGCGKTLLAKAIANESGINFISVKGP 473


>gi|265753170|ref|ZP_06088739.1| ATP-dependent Clp protease [Bacteroides sp. 3_1_33FAA]
 gi|263236356|gb|EEZ21851.1| ATP-dependent Clp protease [Bacteroides sp. 3_1_33FAA]
          Length = 745

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 4/71 (5%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKA----RAEALDHVLFVGPPGLGKTT 69
           +++A +  L  R   +  GQ EA   +   ++ AKA      + L  +LFVGP G+GKT 
Sbjct: 438 EDNATLETLHERISAKIYGQEEAVCQVVEAVQMAKAGLLDENKPLASLLFVGPTGVGKTE 497

Query: 70  LAQVVARELGV 80
           +A+V+A ELG+
Sbjct: 498 VAKVLASELGI 508


>gi|296121985|ref|YP_003629763.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Planctomyces
           limnophilus DSM 3776]
 gi|296014325|gb|ADG67564.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Planctomyces
           limnophilus DSM 3776]
          Length = 427

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 83/202 (41%), Gaps = 41/202 (20%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LA+ +AR L V F       + +AG +   + NL            
Sbjct: 125 NILLIGPTGSGKTLLAKTLARLLQVPFAIGDATTLTEAGYVGEDVENLLLKLLHAADFDI 184

Query: 104 --EDRDVLFIDEIHRLS------IIVEEILYPAMEDFQLDLMVG-----------EGPSA 144
               R ++FIDEI ++        I  ++    ++   L ++ G           + P  
Sbjct: 185 EAAQRGIVFIDEIDKIGKTSQNVSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPEQ 244

Query: 145 RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP-IRLNFYEIEDLKTIVQRGAKLTGLAV 203
           + ++I+ S    I   T VG L + +  R G   I      ++D KT   R  KL   A 
Sbjct: 245 QYIQIDTSNILFICGGTFVG-LEDIIAKRLGKKTIGFGGSSVDDQKT---RSGKLLAHAC 300

Query: 204 TDEAACEIAMRSRGTPRIAGRL 225
           TD+   E  M     P + GRL
Sbjct: 301 TDD-VIEFGM----IPELVGRL 317


>gi|170289856|ref|YP_001736672.1| AAA family ATPase, CDC48 subfamily protein [Candidatus Korarchaeum
           cryptofilum OPF8]
 gi|170173936|gb|ACB06989.1| AAA family ATPase, CDC48 subfamily [Candidatus Korarchaeum
           cryptofilum OPF8]
          Length = 732

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 53/118 (44%), Gaps = 17/118 (14%)

Query: 24  PR-TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVV 74
           PR T E+  G  +A   ++  +E      E   H        VL  GPPG GKT LA+ V
Sbjct: 175 PRVTYEDIGGLKDAIQKIREMVELPLRHPELFRHLGIDPPKGVLLYGPPGTGKTLLAKAV 234

Query: 75  ARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DVLFIDEIHRLSIIVEEI 124
           A E   +F S SGP I     G+    L  + +        ++F+DEI  ++   EE+
Sbjct: 235 ANESNAHFISISGPEIMSKYYGESEKRLREIFEEAEKNAPSIIFMDEIDAIAPKREEV 292



 Score = 42.7 bits (99), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 30/63 (47%), Gaps = 2/63 (3%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           EE    VE         EA+ AR      +L  GPPG GKT LA+ VA E   NF S  G
Sbjct: 464 EELKMAVEWPLKYPELFEASGARQPK--GILLFGPPGTGKTLLAKAVANESEANFISVKG 521

Query: 88  PVI 90
           P I
Sbjct: 522 PEI 524


>gi|1705678|sp|P54774|CDC48_SOYBN RecName: Full=Cell division cycle protein 48 homolog; AltName:
           Full=Valosin-containing protein homolog; Short=VCP
 gi|862480|gb|AAA80587.1| valosin-containing protein [Glycine max]
 gi|86212372|gb|ABC87759.1| plamsma membrane-associated AAA-ATPase [Glycine max]
          Length = 807

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 518 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCV 577

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 578 LFFDELDSIA 587



 Score = 39.3 bits (90), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 245 ILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 304

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 305 IFIDEIDSIA 314


>gi|117926915|ref|YP_867532.1| ATP-dependent protease ATP-binding subunit ClpX [Magnetococcus sp.
           MC-1]
 gi|166214782|sp|A0LDT3|CLPX_MAGSM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|117610671|gb|ABK46126.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Magnetococcus
           sp. MC-1]
          Length = 420

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 54/118 (45%), Gaps = 25/118 (21%)

Query: 26  TLEEFT-GQVEACSNLKVFIEAAKARAEALD----------HVLFVGPPGLGKTTLAQVV 74
           TL+++  GQ  A   L V +     R E+ D          +VL +GP G GKT LAQ +
Sbjct: 71  TLDDYVIGQDNAKRTLAVAVYNHYKRLESNDTSADVEISKSNVLMIGPTGSGKTLLAQTL 130

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNL--------------EDRDVLFIDEIHRLS 118
           AR L V F  T    + +AG +   + N+                R ++FIDEI ++S
Sbjct: 131 ARLLDVPFTITDATTLTEAGYVGEDVENIILRLLQAADNDVEKAQRGIVFIDEIDKIS 188


>gi|291242207|ref|XP_002740980.1| PREDICTED: valosin-containing protein-like [Saccoglossus
           kowalevskii]
          Length = 809

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARQAAPCV 573

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 574 LFFDELDSIA 583



 Score = 37.0 bits (84), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT +A+ VA E G  F   +GP I
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274


>gi|237725806|ref|ZP_04556287.1| ATP-dependent Clp protease [Bacteroides sp. D4]
 gi|229435614|gb|EEO45691.1| ATP-dependent Clp protease [Bacteroides dorei 5_1_36/D4]
          Length = 745

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 4/71 (5%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKA----RAEALDHVLFVGPPGLGKTT 69
           +++A +  L  R   +  GQ EA   +   ++ AKA      + L  +LFVGP G+GKT 
Sbjct: 438 EDNATLETLHERISAKIYGQEEAVCQVVEAVQMAKAGLLDENKPLASLLFVGPTGVGKTE 497

Query: 70  LAQVVARELGV 80
           +A+V+A ELG+
Sbjct: 498 VAKVLASELGI 508


>gi|221481015|gb|EEE19427.1| peroxisomal-type ATPase, putative [Toxoplasma gondii GT1]
          Length = 719

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT LA+ VA E GVNF S  GP
Sbjct: 472 ILLFGPPGTGKTLLAKAVATECGVNFISVKGP 503


>gi|166362932|ref|YP_001655205.1| cell division protein [Microcystis aeruginosa NIES-843]
 gi|166085305|dbj|BAG00013.1| cell division protein [Microcystis aeruginosa NIES-843]
          Length = 654

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 40/108 (37%), Positives = 49/108 (45%), Gaps = 19/108 (17%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVA 75
           P T  +  G  EA + LK  +E  K  AE  +         VL VGPPG GKT LA+ VA
Sbjct: 200 PITFSDVAGAEEAKTELKEIVEFLK-DAERFNKIGARIPKGVLLVGPPGTGKTLLAKAVA 258

Query: 76  RELGVNFRSTS---------GPVIAKAGDLAALLTNLEDRDVLFIDEI 114
            E GV F S S         G   A+  DL A         ++FIDE+
Sbjct: 259 GEAGVTFFSISASEFVELFVGTGAARVRDLFAQAKK-NAPSIIFIDEL 305


>gi|148269554|ref|YP_001244014.1| recombination factor protein RarA/unknown domain fusion protein
           [Thermotoga petrophila RKU-1]
 gi|147735098|gb|ABQ46438.1| Appr-1-p processing domain protein [Thermotoga petrophila RKU-1]
          Length = 599

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 81/207 (39%), Gaps = 30/207 (14%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG- 79
           LLRP+  E+F GQ     +  +     K        +L+ GPPG GKT++  ++ R    
Sbjct: 11  LLRPKDFEDFVGQDHIFGDKGILRRTLKT-GNMFSSILY-GPPGSGKTSVFSLLKRYFNG 68

Query: 80  --VNFRSTSGPV--IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME--DFQ 133
             V   ST   V  I         L     + +LF+DEIHRL+   + +L   +E  D  
Sbjct: 69  EVVYLSSTVHGVSEIKNVLKRGEQLRKYGKKLLLFLDEIHRLNKNQQMVLVSHVERGDIV 128

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           L     E PS   V   LSR  +        L    L D             EDL  I++
Sbjct: 129 LVATTTENPSFAIVPALLSRCRI--------LYFKKLSD-------------EDLMKILK 167

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPR 220
           +  ++  L + + A   I   S G  R
Sbjct: 168 KATRVLKLDLEETAEKAIVKHSEGDAR 194


>gi|297621660|ref|YP_003709797.1| Lon ATP-dependent protease [Waddlia chondrophila WSU 86-1044]
 gi|297376961|gb|ADI38791.1| Lon ATP-dependent protease [Waddlia chondrophila WSU 86-1044]
          Length = 830

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 71/303 (23%), Positives = 123/303 (40%), Gaps = 63/303 (20%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAKAGDLAALLT 101
           +  VGPPG+GKT++ + +AR L   F   S                 + A  G +   L 
Sbjct: 385 ICIVGPPGVGKTSVGKSIARALNRKFYRFSVGGMRDEAEIKGHRRTYIGAMPGKMVQALK 444

Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLS 152
             +  + V+ +DE+ ++    +        E+L P      LD  +        V+ +LS
Sbjct: 445 YCKTMNPVIMLDEVDKIGNSYQGDPASALLEVLDPEQNKDFLDHYL-------DVRCDLS 497

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL-----KTIVQRGAKLTGLAVTDEA 207
               I     +  +  PL+DR  I +RL+ Y +E+      K ++ R  KL GL   + +
Sbjct: 498 DVLFIVTANVLDTIPEPLKDRMDI-LRLSGYIMEEKIEIANKYLIPRNRKLIGLKAKEIS 556

Query: 208 ACEIAMRS--RGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDL 265
             + A+R    G  R AG     VR F      K I R++A    L +  ++  +++   
Sbjct: 557 FTKPAIRQIIEGYAREAG-----VRSFEN--QIKKIMRKVA----LEIVKERAEWEK--- 602

Query: 266 RYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQ 325
                  ++  G  +  E     L  P+   + L +P  I + F ++ P G +   +AW 
Sbjct: 603 ------KKHKKGMELPAE---KRLITPKTVEKYLGKPVFISEMFYKKNPIG-VCTGLAWT 652

Query: 326 HLG 328
            LG
Sbjct: 653 ALG 655


>gi|296131604|ref|YP_003638851.1| ATPase associated with various cellular activities AAA_5
           [Thermincola sp. JR]
 gi|296030182|gb|ADG80950.1| ATPase associated with various cellular activities AAA_5
           [Thermincola potens JR]
          Length = 316

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 55/224 (24%), Positives = 96/224 (42%), Gaps = 44/224 (19%)

Query: 48  KARAEALD---HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAA------ 98
           KA   A+D   H+L  GPPG  K+T+ + +ARE  + F    G +    G L        
Sbjct: 20  KAILSAIDAGKHILLEGPPGTSKSTILRNIAREAKMPFYIIEGNIDLTPGKLVGHFNPAK 79

Query: 99  ---------------LLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPS 143
                          L   +E+  +L+I+E +R+   V  +L   ME+ +L +     P 
Sbjct: 80  VMADDYRPEYFEKGPLTKAMEEGGILYIEEFNRMPADVSNVLITPMEEGELFI-----PR 134

Query: 144 ARSVKINLSRFTLIAA--------TTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
             +VK    RFT++A+        T RV   +    DR  + I++ +   ++ + IV+R 
Sbjct: 135 YGTVKA-ADRFTVVASQNPYDDVGTVRV---SRAFMDRICL-IKMEYQPQQEEEIIVKRK 189

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIA-GRLLRRVRDFAEVAHA 238
              T   +  E A +   ++R  P I  G  +R   D  ++ ++
Sbjct: 190 TGCTDQRII-ELAVKFVRKTREHPDIKMGASVRAAIDIVDIFNS 232


>gi|300770297|ref|ZP_07080176.1| ATPase [Sphingobacterium spiritivorum ATCC 33861]
 gi|300762773|gb|EFK59590.1| ATPase [Sphingobacterium spiritivorum ATCC 33861]
          Length = 1612

 Score = 44.7 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 46/184 (25%), Positives = 85/184 (46%), Gaps = 33/184 (17%)

Query: 50   RAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA------------KAGDLA 97
            R   +  +L + PPG GKTTL + +A+ LG++F   +GP I              +G+  
Sbjct: 1249 RTARMGMLLLISPPGYGKTTLMEYLAKILGLHFVKVNGPTIGHSITSIDPVEAKTSGERE 1308

Query: 98   ALLT-----NLEDRDVLFIDEIHRLSI-IVEEILYPAMEDFQLD-LMVGEGPSARSVKIN 150
             L        + D  +L++D+I  LS   +++ +  A    ++D +  GE   +++  + 
Sbjct: 1309 ELKKINLSFEMADNVMLYLDDIQHLSAEFLQKFISLADGQRKIDGIFDGE---SKTYDLR 1365

Query: 151  LSRFTLIAATTRVGLLTNPLQD---RFGIPIRL-NFYEIEDLKTIVQRGAKLTGLAVTDE 206
              RF ++ A        NP  +   +F IP  L N  ++ +L  ++   A L  L++ + 
Sbjct: 1366 GKRFCIVMA-------GNPYTESGSKFQIPDMLANRADVYNLGDVIGDTAHLFNLSLIEN 1418

Query: 207  AACE 210
            AA E
Sbjct: 1419 AAIE 1422


>gi|237711935|ref|ZP_04542416.1| ATP-dependent Clp protease [Bacteroides sp. 9_1_42FAA]
 gi|229454630|gb|EEO60351.1| ATP-dependent Clp protease [Bacteroides sp. 9_1_42FAA]
          Length = 745

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 4/71 (5%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKA----RAEALDHVLFVGPPGLGKTT 69
           +++A +  L  R   +  GQ EA   +   ++ AKA      + L  +LFVGP G+GKT 
Sbjct: 438 EDNATLETLHERISAKIYGQEEAVCQVVEAVQMAKAGLLDENKPLASLLFVGPTGVGKTE 497

Query: 70  LAQVVARELGV 80
           +A+V+A ELG+
Sbjct: 498 VAKVLASELGI 508


>gi|221107178|ref|XP_002169843.1| PREDICTED: similar to predicted protein, partial [Hydra
           magnipapillata]
          Length = 572

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT LA+ +A E G+NF S  GP
Sbjct: 290 ILLAGPPGCGKTLLAKAIANEAGINFISVKGP 321


>gi|148228726|ref|NP_001084621.1| chromosome transmission fidelity protein 18 homolog [Xenopus
           laevis]
 gi|82237184|sp|Q6NU40|CTF18_XENLA RecName: Full=Chromosome transmission fidelity protein 18 homolog
 gi|46249842|gb|AAH68761.1| Chtf18 protein [Xenopus laevis]
          Length = 1000

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 51/118 (43%), Gaps = 28/118 (23%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEA-LDH--------VLFVGPPGLGKTTL 70
           +++ PR    F  Q E  S  K   +  +   EA LDH         L  GPPGLGKTTL
Sbjct: 347 AIVDPRA-NHFKNQKEQQSKFKTKAQITEEILEAELDHHNRPKNKVSLLCGPPGLGKTTL 405

Query: 71  AQVVARELGVN--------------FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEI 114
           A V+AR  G N              FR+     I  A  + ++L   E  + L IDEI
Sbjct: 406 AHVIARHAGYNVVEMNASDDRSPEAFRTR----IEAATQMKSVLGVDERPNCLIIDEI 459


>gi|82596542|ref|XP_726304.1| cell division cycle ATPase [Plasmodium yoelii yoelii str. 17XNL]
 gi|23481659|gb|EAA17869.1| putative cell division cycle ATPase [Plasmodium yoelii yoelii]
          Length = 1078

 Score = 44.7 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           +L  GPPG GKT LA+ +A E   NF S  GP +     G+  A + +L D+       +
Sbjct: 819 ILLYGPPGCGKTLLAKAIANECNANFISVKGPELLTMWFGESEANVRDLFDKARAASPCI 878

Query: 109 LFIDEIHRLS 118
           +F DEI  L+
Sbjct: 879 IFFDEIDSLA 888


>gi|312216774|emb|CBX96724.1| similar to cell division control protein 48 [Leptosphaeria
           maculans]
          Length = 830

 Score = 44.7 bits (104), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ VA E   NF S  GP
Sbjct: 543 VLFYGPPGTGKTLLAKAVANECAANFISIKGP 574



 Score = 38.1 bits (87), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 269 ILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 328

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 329 IFIDEIDSIA 338


>gi|289191993|ref|YP_003457934.1| AAA ATPase central domain protein [Methanocaldococcus sp. FS406-22]
 gi|288938443|gb|ADC69198.1| AAA ATPase central domain protein [Methanocaldococcus sp. FS406-22]
          Length = 371

 Score = 44.7 bits (104), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 48/100 (48%), Gaps = 12/100 (12%)

Query: 27  LEEFTGQVEA---CSNLKVFIEAAKARAE-ALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
             E  GQ EA   C  +  ++E  K   E A  +VLF GPPG GKT +A+ +A E   +F
Sbjct: 123 FSEIIGQEEAKKKCRIIMKYLENPKLFGEWAPKNVLFYGPPGTGKTLMARALATETNSSF 182

Query: 83  RSTSGPVI--AKAGDLAALLTNLEDRD------VLFIDEI 114
                P +     GD + ++  L  R       ++FIDE+
Sbjct: 183 ILVKAPELIGEHVGDASKMIRELYQRASENAPCIVFIDEL 222


>gi|209865725|gb|ACC66148.3| cell division cycle protein [Dimocarpus longan]
 gi|221327637|gb|ACM17483.1| cell division cycle protein [Dimocarpus longan]
          Length = 805

 Score = 44.7 bits (104), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 518 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCV 577

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 578 LFFDELDSIA 587



 Score = 39.3 bits (90), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 245 ILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 304

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 305 IFIDEIDSIA 314


>gi|188588880|ref|YP_001920497.1| ATPase, AAA family [Clostridium botulinum E3 str. Alaska E43]
 gi|251778335|ref|ZP_04821255.1| ATPase, AAA family [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|188499161|gb|ACD52297.1| ATPase, AAA family [Clostridium botulinum E3 str. Alaska E43]
 gi|243082650|gb|EES48540.1| ATPase, AAA family [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 103

 Score = 44.7 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 8/99 (8%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           L+RP  +E+F GQ              K++   + + +F GPPG GKTTLA ++A+ +  
Sbjct: 7   LMRPSKIEDFVGQRHILGKNTPLYNLIKSKK--ICNCIFYGPPGTGKTTLANIMAKYVDK 64

Query: 81  NFRSTSGPVIAKAGDLAALLTNLEDR-----DVLFIDEI 114
            F   +    A   D+  + + L++       VL+IDE+
Sbjct: 65  KFYKLNA-TTASVKDIQNITSELDNLLNYAGVVLYIDEL 102


>gi|189199666|ref|XP_001936170.1| cell division cycle protein 48 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187983269|gb|EDU48757.1| cell division cycle protein 48 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 818

 Score = 44.7 bits (104), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ VA E   NF S  GP
Sbjct: 531 VLFYGPPGTGKTLLAKAVANECAANFISIKGP 562



 Score = 38.1 bits (87), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 257 ILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 316

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 317 IFIDEIDSIA 326


>gi|251794362|ref|YP_003009093.1| ATPase AAA [Paenibacillus sp. JDR-2]
 gi|247541988|gb|ACS99006.1| AAA ATPase central domain protein [Paenibacillus sp. JDR-2]
          Length = 594

 Score = 44.7 bits (104), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 47/108 (43%), Gaps = 19/108 (17%)

Query: 26  TLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T +++ G  E   N K  +       +  K   EA+  +L  GPPG GK+ LAQV+A E 
Sbjct: 81  TWDDYRGNPEIVENAKRIVSLLRGVKDFKKMGGEAIRGLLLCGPPGTGKSYLAQVIANEA 140

Query: 79  GVNFRSTSGPVIAK----AGDL--------AALLTNLEDRDVLFIDEI 114
            V F   S P         G+L        A  L  +    ++FIDE+
Sbjct: 141 QVPFAYASAPSFQNMFFGVGNLRVMRIYKKARKLARMYGACIIFIDEV 188


>gi|156370042|ref|XP_001628281.1| predicted protein [Nematostella vectensis]
 gi|156215254|gb|EDO36218.1| predicted protein [Nematostella vectensis]
          Length = 807

 Score = 44.7 bits (104), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 509 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARSAAPCV 568

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 569 LFFDELDSIA 578



 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 236 ILLFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAI 295

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 296 IFIDEI 301


>gi|146324243|ref|XP_753175.2| replication factor C subunit [Aspergillus fumigatus Af293]
 gi|129557997|gb|EAL91137.2| replication factor C subunit [Aspergillus fumigatus Af293]
 gi|159127094|gb|EDP52210.1| replication factor C subunit [Aspergillus fumigatus A1163]
          Length = 389

 Score = 44.7 bits (104), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 32/56 (57%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP TL++  GQ E  S LK F+   K       H+LF GPPG GKT+    +AR+L
Sbjct: 26 RPATLKQVVGQDETLSVLKSFMIHRK-----FPHLLFHGPPGTGKTSTILALARQL 76


>gi|324506159|gb|ADY42638.1| Nuclear valosin-containing protein-like protein [Ascaris suum]
          Length = 812

 Score = 44.7 bits (104), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT LA+ +A E G+NF S  GP
Sbjct: 576 ILLCGPPGCGKTLLAKAIANETGMNFISVKGP 607


>gi|170595872|ref|XP_001902553.1| transitional endoplasmic reticulum ATPase TER94 [Brugia malayi]
 gi|158589713|gb|EDP28598.1| transitional endoplasmic reticulum ATPase TER94, putative [Brugia
           malayi]
          Length = 351

 Score = 44.7 bits (104), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 59  VLFYGPPGCGKTLLAKAIAHECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCV 118

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 119 LFFDELDSVA 128


>gi|153004960|ref|YP_001379285.1| ATP-dependent protease La [Anaeromyxobacter sp. Fw109-5]
 gi|152028533|gb|ABS26301.1| ATP-dependent protease La [Anaeromyxobacter sp. Fw109-5]
          Length = 828

 Score = 44.7 bits (104), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 92/228 (40%), Gaps = 60/228 (26%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA---GDLAALLTNLEDR------ 106
           + FVGPPG+GKT+L Q +AR +G  F R + G V  +A   G     +  L  R      
Sbjct: 375 LCFVGPPGVGKTSLGQSIARSIGRKFVRLSLGGVRDEAEIRGHRRTYVGALPGRIIQSMK 434

Query: 107 ------DVLFIDEIHRL--------SIIVEEILYP----AMEDFQLDLMVGEGPSARSVK 148
                  V+ +DEI +L        S  + E+L P    +  D  LDL            
Sbjct: 435 KAGTVNPVMMLDEIDKLGADFRGDPSAALLEVLDPEQNHSFSDHYLDLAY---------- 484

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ----------RGAKL 198
            +LS+   I     +  +  PL+DR  I + L  Y  E+   I Q           G   
Sbjct: 485 -DLSKVMFIGTANLLDPIPGPLKDRMEI-LELPGYTFEEKVHIAQNHLIPKQLREHGLSA 542

Query: 199 TGLAVTDEAACEIAMRSRGTPRIAG--RLLRRVRDFA-----EVAHAK 239
             +A+T++A  +I M      R AG   L RR+ D       EVA  K
Sbjct: 543 DAIAITEKALIKIIM---AYTREAGVRNLERRIADVCRAVAVEVASGK 587


>gi|297466719|ref|XP_002704662.1| PREDICTED: NVL protein-like [Bos taurus]
          Length = 260

 Score = 44.7 bits (104), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
          VL  GPPG GKT LA+ VA E G+NF S  GP
Sbjct: 32 VLLAGPPGCGKTLLAKAVANESGLNFISVKGP 63


>gi|268530368|ref|XP_002630310.1| Hypothetical protein CBG00746 [Caenorhabditis briggsae]
 gi|187038824|emb|CAP21912.1| hypothetical protein CBG_00746 [Caenorhabditis briggsae AF16]
          Length = 811

 Score = 44.7 bits (104), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 519 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCV 578

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 579 LFFDELDSIA 588



 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLEDRD--V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I          +L       E     +
Sbjct: 246 ILLFGPPGTGKTLIARAVANETGAFFFLINGPEIMSKMSGESESNLRKAFAECEKNSPAI 305

Query: 109 LFIDEIHRLS 118
           LFIDEI  ++
Sbjct: 306 LFIDEIDAIA 315


>gi|255070161|ref|XP_002507162.1| cell division cycle protein 48-like protein, expessed [Micromonas
           sp. RCC299]
 gi|226522437|gb|ACO68420.1| cell division cycle protein 48-like protein, expessed [Micromonas
           sp. RCC299]
          Length = 821

 Score = 44.7 bits (104), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 518 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCV 577

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 578 LFFDELDSIA 587



 Score = 37.7 bits (86), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 245 ILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 304

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 305 IFIDEIDSIA 314


>gi|221506989|gb|EEE32606.1| peroxisomal-type ATPase, putative [Toxoplasma gondii VEG]
          Length = 719

 Score = 44.7 bits (104), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT LA+ VA E GVNF S  GP
Sbjct: 472 ILLFGPPGTGKTLLAKAVATECGVNFISVKGP 503


>gi|269861299|ref|XP_002650361.1| replication factor C subunit [Enterocytozoon bieneusi H348]
 gi|220066192|gb|EED43686.1| replication factor C subunit [Enterocytozoon bieneusi H348]
          Length = 298

 Score = 44.7 bits (104), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 10/111 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG--V 80
           RP+TL++  G        +V I+  K       H+LF GPPG GKTT++++++++    +
Sbjct: 10  RPKTLDDVIGN-------EVIIKLIKNLDNTFPHLLFCGPPGTGKTTVSKILSQKFSKVL 62

Query: 81  NFRSTSGPVIAKAGDLAALLTNLEDRDVLFI-DEIHRLSIIVEEILYPAME 130
              ++    I    +     T L ++  L I DE   L+++ ++ L   ME
Sbjct: 63  ELNASDERGIDTIRNRIKTFTQLAEQSKLVIMDECDSLTLVAQQALRRLME 113


>gi|212691639|ref|ZP_03299767.1| hypothetical protein BACDOR_01134 [Bacteroides dorei DSM 17855]
 gi|212665828|gb|EEB26400.1| hypothetical protein BACDOR_01134 [Bacteroides dorei DSM 17855]
          Length = 745

 Score = 44.7 bits (104), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 4/71 (5%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKA----RAEALDHVLFVGPPGLGKTT 69
           +++A +  L  R   +  GQ EA   +   ++ AKA      + L  +LFVGP G+GKT 
Sbjct: 438 EDNATLETLHERISAKIYGQEEAVCQVVEAVQMAKAGLLDENKPLASLLFVGPTGVGKTE 497

Query: 70  LAQVVARELGV 80
           +A+V+A ELG+
Sbjct: 498 VAKVLASELGI 508


>gi|162148061|ref|YP_001602522.1| recombination factor protein RarA [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209542678|ref|YP_002274907.1| recombination factor protein RarA [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161786638|emb|CAP56221.1| ATPase, AAA family protein [Gluconacetobacter diazotrophicus PAl 5]
 gi|209530355|gb|ACI50292.1| AAA ATPase central domain protein [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 473

 Score = 44.7 bits (104), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 71/147 (48%), Gaps = 17/147 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP +L++  GQ   +     L+  ++       +L  ++  G PG+GKTT+A+++A   
Sbjct: 51  LRPESLDDVVGQDHLLGPDGALRRMLDRG-----SLASLILWGGPGVGKTTIARLLADAA 105

Query: 79  GVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           G+ F   S        + +A D A  L       +LF+DEIHR +   ++   P +ED  
Sbjct: 106 GLRFVQLSAVFSGVADLKRAFDDARRLGEAGQGTLLFVDEIHRFNRAQQDGFLPVVEDGT 165

Query: 134 LDLMVGEGPSARSVKIN---LSRFTLI 157
           + ++VG      S  +N   LSR  ++
Sbjct: 166 V-VLVGATTENPSFALNGALLSRCQVM 191


>gi|17229735|ref|NP_486283.1| hypothetical protein all2243 [Nostoc sp. PCC 7120]
 gi|17131334|dbj|BAB73942.1| all2243 [Nostoc sp. PCC 7120]
          Length = 613

 Score = 44.7 bits (104), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 45/80 (56%), Gaps = 8/80 (10%)

Query: 47  AKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLE 104
           AK   E    VL VGPPG GKT  A+ +A ELGVN+ +  GP VI+K  G+    L  + 
Sbjct: 120 AKLGLEPTRGVLLVGPPGTGKTLTARGLAEELGVNYIALVGPEVISKYYGEAEQRLRGIF 179

Query: 105 DRD------VLFIDEIHRLS 118
           ++       ++FIDEI  L+
Sbjct: 180 EKAAKNAPCIIFIDEIDSLA 199



 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 8/79 (10%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLT 101
           + +A A   +L  GPPG GKT LA+ VA +   NF   +GP      V A    +  L  
Sbjct: 387 QTKALAPKGILLWGPPGTGKTLLAKAVASQARANFIGVNGPELLSRWVGASEQAVRELFA 446

Query: 102 NLEDRD--VLFIDEIHRLS 118
                +  V+FIDEI  L+
Sbjct: 447 KARQAEPCVVFIDEIDTLA 465


>gi|326433452|gb|EGD79022.1| cell division cycle protein 48 [Salpingoeca sp. ATCC 50818]
          Length = 805

 Score = 44.3 bits (103), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 511 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCV 570

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 571 LFFDELDSIA 580



 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT LA+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 238 ILLYGPPGTGKTLLARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNAPAI 297

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 298 IFIDEIDAIA 307


>gi|330924950|ref|XP_003300847.1| hypothetical protein PTT_12208 [Pyrenophora teres f. teres 0-1]
 gi|311324808|gb|EFQ91051.1| hypothetical protein PTT_12208 [Pyrenophora teres f. teres 0-1]
          Length = 819

 Score = 44.3 bits (103), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ VA E   NF S  GP
Sbjct: 532 VLFYGPPGTGKTLLAKAVANECAANFISIKGP 563



 Score = 38.1 bits (87), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 258 ILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 317

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 318 IFIDEIDSIA 327


>gi|307183660|gb|EFN70363.1| ATPase WRNIP1 [Camponotus floridanus]
          Length = 554

 Score = 44.3 bits (103), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 69/149 (46%), Gaps = 15/149 (10%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA------ 75
           +RP +L  F GQ        +  E  + +   + +++  GPPG GKT+LA V+A      
Sbjct: 116 MRPISLLNFVGQKHILGPRTMLSELLQKKE--IPNMILWGPPGCGKTSLANVIAHMCKND 173

Query: 76  --RELGVNFRSTSGPVIAKAGDLAALLTN---LEDRDVLFIDEIHRLSIIVEEILYPAME 130
             R+L     S +   + +  ++ ++  N      + ++F+DEIHR +   +++  P +E
Sbjct: 174 TSRKLRYVKLSAAMAGVQEVKEVISVAANHAKFAQQTIVFMDEIHRFNKTQQDVFLPHVE 233

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLI 157
              + L+    E PS       LSR  +I
Sbjct: 234 SGTITLIGATTENPSFSLNSALLSRCRVI 262


>gi|158298980|ref|XP_319111.4| AGAP009973-PA [Anopheles gambiae str. PEST]
 gi|157014148|gb|EAA13918.4| AGAP009973-PA [Anopheles gambiae str. PEST]
          Length = 570

 Score = 44.3 bits (103), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 54/118 (45%), Gaps = 16/118 (13%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78
           T E+  G  EA   LK  +E  K   +  +        VL VGPPG GKT LA+ VA E 
Sbjct: 127 TFEDVKGCDEAKQELKEVVEFLKNPGKFSNLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 186

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSII-VEEILYP 127
           GV F   +GP      V   A  +  L    ++R   V+FIDEI  +       +L+P
Sbjct: 187 GVPFFHAAGPEFDEVLVGQGARRVRDLFKAAKERAPCVIFIDEIDSVGAKRTNSVLHP 244


>gi|75906293|ref|YP_320589.1| AAA ATPase [Anabaena variabilis ATCC 29413]
 gi|75700018|gb|ABA19694.1| AAA ATPase, central region [Anabaena variabilis ATCC 29413]
          Length = 613

 Score = 44.3 bits (103), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 45/80 (56%), Gaps = 8/80 (10%)

Query: 47  AKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLE 104
           AK   E    VL VGPPG GKT  A+ +A ELGVN+ +  GP VI+K  G+    L  + 
Sbjct: 120 AKLGLEPTRGVLLVGPPGTGKTLTARGLAEELGVNYIALVGPEVISKYYGEAEQRLRGIF 179

Query: 105 DRD------VLFIDEIHRLS 118
           ++       ++FIDEI  L+
Sbjct: 180 EKAAKNAPCIIFIDEIDSLA 199



 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 8/79 (10%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLT 101
           + +A A   +L  GPPG GKT LA+ VA +   NF   +GP      V A    +  L  
Sbjct: 387 QTKALAPKGILLWGPPGTGKTLLAKAVASQARANFIGVNGPELLSRWVGASEQAVRELFA 446

Query: 102 NLEDRD--VLFIDEIHRLS 118
                +  V+FIDEI  L+
Sbjct: 447 KARQAEPCVVFIDEIDTLA 465


>gi|327262665|ref|XP_003216144.1| PREDICTED: nuclear valosin-containing protein-like [Anolis
           carolinensis]
          Length = 844

 Score = 44.3 bits (103), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT LA+ VA E G+NF S  GP
Sbjct: 606 ILLAGPPGCGKTLLAKAVANESGLNFISVKGP 637


>gi|301774052|ref|XP_002922441.1| PREDICTED: nuclear valosin-containing protein-like [Ailuropoda
           melanoleuca]
          Length = 849

 Score = 44.3 bits (103), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E G+NF S  GP
Sbjct: 611 VLLAGPPGCGKTLLAKAVANESGLNFISVKGP 642


>gi|291543201|emb|CBL16310.1| Recombination protein MgsA [Ruminococcus sp. 18P13]
          Length = 420

 Score = 44.3 bits (103), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 70/150 (46%), Gaps = 24/150 (16%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP TL+E  GQ   +     L+  +E  +     + +++F GP G+GKTTLA+++A   
Sbjct: 8   IRPTTLDEIVGQPHLLAPGKPLRRILERGQ-----VTNMIFYGPSGVGKTTLARIIASNS 62

Query: 79  GVNFRSTSGP---------VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
            +     +G          +IA+ G LA       +  +L++DEI  L+   ++ L   +
Sbjct: 63  NMTLYKLNGTSASVGDIKEIIAQTGTLAGC-----NGILLYLDEIQYLNKKQQQSLLEYI 117

Query: 130 EDFQLDLMVG--EGPSARSVKINLSRFTLI 157
           E+  L L+    E P        +SR T+ 
Sbjct: 118 ENGSLTLIASTTENPYFAVFNAIISRSTVF 147


>gi|256820706|ref|YP_003141985.1| DNA polymerase III, subunits gamma and tau [Capnocytophaga ochracea
           DSM 7271]
 gi|256582289|gb|ACU93424.1| DNA polymerase III, subunits gamma and tau [Capnocytophaga ochracea
           DSM 7271]
          Length = 569

 Score = 44.3 bits (103), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 65/257 (25%), Positives = 108/257 (42%), Gaps = 37/257 (14%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP++  +  GQ    + L   IE     A+AL   LF GP G+GKTT A+++A+++    
Sbjct: 12  RPQSFRDVVGQQAITNTLLNAIENNHL-AQAL---LFTGPRGVGKTTCARILAKKIN--- 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL--------------SIIVEEILYPA 128
             TSG  +    D A  +  L+      +D+I +L                I++E+   +
Sbjct: 65  EQTSG--VEDENDFAFNVFELDAASNNSVDDIRKLIEQVRIPPQVGKYKVYIIDEVHMLS 122

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
              F   L   E P   ++         I ATT    +   +  R  I        I D+
Sbjct: 123 TAAFNAFLKTLEEPPKHAI--------FILATTEKHKIIPTILSRCQI-FDFKRITINDI 173

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++  A+  G+   DEA   IA ++ G  R A  +  RV  F+     + ITR+ A +
Sbjct: 174 REYLKYIAEQQGIEAEDEALQIIAQKADGAMRDALSIFDRVVSFS----GEKITRQ-ATS 228

Query: 249 ALLRLAIDKMGFDQLDL 265
            +L +   ++ F   DL
Sbjct: 229 EILNVLDYEVYFKVTDL 245


>gi|552189|gb|AAA29520.1| cell division cycle ATPase [Plasmodium falciparum]
          Length = 709

 Score = 44.3 bits (103), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           +L  GPPG GKT LA+ +A E   NF S  GP +     G+  A + +L D+       +
Sbjct: 593 ILLYGPPGCGKTLLAKAIANECKANFISVKGPELLTMWFGESEANVRDLFDKARAASPCI 652

Query: 109 LFIDEIHRLS 118
           +F DEI  L+
Sbjct: 653 IFFDEIDSLA 662


>gi|291568075|dbj|BAI90347.1| cell division control protein CDC48 homolog [Arthrospira platensis
           NIES-39]
          Length = 611

 Score = 44.3 bits (103), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 42/75 (56%), Gaps = 8/75 (10%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDRD-- 107
           E    VL VGPPG GKT  A+ +A ELGVN+ +  GP VI K  G+    L  + ++   
Sbjct: 123 EPTHGVLLVGPPGTGKTLTARALAEELGVNYIALVGPEVITKYYGEAEQKLRAIFEKAAK 182

Query: 108 ----VLFIDEIHRLS 118
               ++FIDEI  L+
Sbjct: 183 NAPCIIFIDEIDSLA 197



 Score = 40.0 bits (92), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 8/79 (10%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLT 101
           + +A A   +L  GPPG GKT LA+ VA +   NF   +GP      V A    +  L  
Sbjct: 385 ETKARAPKGILLWGPPGTGKTLLAKAVASQARANFIGINGPDLLSRWVGASEQAVRELFA 444

Query: 102 NLEDRD--VLFIDEIHRLS 118
                D  V+FIDE+  L+
Sbjct: 445 KARQADPCVIFIDELDTLA 463


>gi|170592277|ref|XP_001900895.1| ATPase, AAA family protein [Brugia malayi]
 gi|158591590|gb|EDP30195.1| ATPase, AAA family protein [Brugia malayi]
          Length = 739

 Score = 44.3 bits (103), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT LA+ VA E G+NF S  GP
Sbjct: 500 ILLCGPPGCGKTLLAKAVANESGMNFISIKGP 531


>gi|159467975|ref|XP_001692158.1| hypothetical protein CHLREDRAFT_145703 [Chlamydomonas reinhardtii]
 gi|158278344|gb|EDP04108.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 2689

 Score = 44.3 bits (103), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 50/96 (52%), Gaps = 13/96 (13%)

Query: 35   EACSNLKVFIEAAKARAEALD----HVLFVGPPGLGKTTLAQVVA---RELGV----NFR 83
            +A  +L   +E  K R   L     +V F+G PG GKTT+A++ A   +ELGV     F 
Sbjct: 1703 KAMFDLAAAVELDKERGHPLSSKQYNVRFLGNPGTGKTTVARMYAELLKELGVISGAEFV 1762

Query: 84   STSGPVIAKAG--DLAALLTNLEDRDVLFIDEIHRL 117
             TSG  +A  G   L   L  LE   +LF+DE ++L
Sbjct: 1763 ETSGAELASGGTSKLQEHLKKLEGGGLLFLDEAYQL 1798


>gi|281338564|gb|EFB14148.1| hypothetical protein PANDA_011417 [Ailuropoda melanoleuca]
          Length = 719

 Score = 44.3 bits (103), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E G+NF S  GP
Sbjct: 574 VLLAGPPGCGKTLLAKAVANESGLNFISVKGP 605


>gi|254585629|ref|XP_002498382.1| ZYRO0G08910p [Zygosaccharomyces rouxii]
 gi|238941276|emb|CAR29449.1| ZYRO0G08910p [Zygosaccharomyces rouxii]
          Length = 1121

 Score = 44.3 bits (103), Expect = 0.024,   Method: Composition-based stats.
 Identities = 67/277 (24%), Positives = 110/277 (39%), Gaps = 48/277 (17%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLA 71
           S+E   I+  +    E+  G  +    +  FI   K   +    +L FVGPPG+GKT++ 
Sbjct: 568 SKEQYSINSAKKTLDEDHYGMNDVKDRILEFIAVGKLLGKVDGKILCFVGPPGVGKTSIG 627

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLA----------------ALLTNLEDRDVLFIDEIH 115
           + +AR L   F S S   +    ++                 AL        ++ IDEI 
Sbjct: 628 KSIARSLNRKFFSFSVGGLTDVAEIKGHRRTYIGALPGRVIQALKKCQTQNPLILIDEID 687

Query: 116 RL---------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
           ++         S  + E+L P      LD       +   + I+LSR   +     +  +
Sbjct: 688 KIGHAGIHGDPSAALLEVLDPEQNSNFLD-------NYLDISIDLSRVLFVCTANTLDTI 740

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQR-----GAKLTGLAVTDEAACEIAMRS--RGTP 219
             PL DR  + I L  Y  ED   I ++       +  GL   +    E A+RS  R   
Sbjct: 741 PRPLLDRMEV-IELTGYVAEDKVKIAEQYLSPSAKRAAGLENANVDLAEDAIRSLMRKYC 799

Query: 220 RIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAID 256
           R +G     VR+  +  H + I R+ A   + +L++D
Sbjct: 800 RESG-----VRNLKK--HIEKIYRKAALNVVKQLSMD 829


>gi|167535575|ref|XP_001749461.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163772089|gb|EDQ85746.1| predicted protein [Monosiga brevicollis MX1]
          Length = 801

 Score = 44.3 bits (103), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 509 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCV 568

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 569 LFFDELDSIA 578



 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 236 ILLYGPPGTGKTMIARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 295

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 296 IFIDEIDAIA 305


>gi|156086698|ref|XP_001610758.1| cell division control protein 48 [Babesia bovis T2Bo]
 gi|154798011|gb|EDO07190.1| cell division control protein 48, putative [Babesia bovis]
          Length = 804

 Score = 44.3 bits (103), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ VA E   NF S  GP
Sbjct: 524 VLFYGPPGCGKTLLAKAVASECSANFISIKGP 555



 Score = 37.4 bits (85), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALL------TNLEDRDV 108
           VL  GPPG GKT +A+ VA E G  F   +GP V++K AG+  + L             +
Sbjct: 251 VLLYGPPGSGKTLIARAVANETGAYFFLINGPEVMSKMAGEAESNLRRAFAEAEKNAPAI 310

Query: 109 LFIDEIHRLS 118
           +FIDE+  ++
Sbjct: 311 IFIDEVDSIA 320


>gi|326492542|dbj|BAK02054.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 593

 Score = 44.3 bits (103), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 302 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARGSAPCV 361

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 362 LFFDELDSIA 371



 Score = 38.1 bits (87), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 29  ILLFGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 88

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 89  IFIDEIDSIA 98


>gi|302686514|ref|XP_003032937.1| hypothetical protein SCHCODRAFT_85085 [Schizophyllum commune H4-8]
 gi|300106631|gb|EFI98034.1| hypothetical protein SCHCODRAFT_85085 [Schizophyllum commune H4-8]
          Length = 814

 Score = 44.3 bits (103), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 518 VLFYGPPGTGKTMLAKAIANECNANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCV 577

Query: 109 LFIDEIHRLS 118
           +F DE+  ++
Sbjct: 578 MFFDELDSIA 587



 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 245 ILMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 304

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 305 IFIDEIDSIA 314


>gi|112818458|gb|AAI22551.1| VCP protein [Homo sapiens]
          Length = 475

 Score = 44.3 bits (103), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 183 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 242

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 243 LFFDELDSIA 252


>gi|48257098|gb|AAH07562.2| VCP protein [Homo sapiens]
          Length = 644

 Score = 44.3 bits (103), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 352 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 411

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 412 LFFDELDSIA 421



 Score = 37.0 bits (84), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 79  ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 138

Query: 109 LFIDEIHRLS 118
           +FIDE+  ++
Sbjct: 139 IFIDELDAIA 148


>gi|291525136|emb|CBK90723.1| amino acid ABC transporter ATP-binding protein, PAAT family (TC
           3.A.1.3.-) [Eubacterium rectale DSM 17629]
 gi|291529375|emb|CBK94961.1| amino acid ABC transporter ATP-binding protein, PAAT family (TC
           3.A.1.3.-) [Eubacterium rectale M104/1]
          Length = 261

 Score = 44.3 bits (103), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 58/248 (23%), Positives = 96/248 (38%), Gaps = 36/248 (14%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +++L  R +E+  G+     ++   +E   A A        +G  G GKTTL + +    
Sbjct: 1   MAILEVRNIEKHFGRTNVLKDVSFSMEEGNALA-------IIGSSGSGKTTLLRCL---- 49

Query: 79  GVNF--RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI----LYPAMEDF 132
             NF  R  SG +I     L       +D+D     +     ++ ++      Y A+E+ 
Sbjct: 50  --NFLERPDSGQIIVNGETLFDASEAGKDKDAELRKKRLHFGMVFQQFNLFPQYTALENV 107

Query: 133 QLD--LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
            L   L+  E P  +  K         A  TR+      L DR G+  R+N Y  +    
Sbjct: 108 TLAERLLAQETPEFKKDKK--------AILTRIDEHGKELLDRMGLAERMNHYPHQLSGG 159

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE-------VAHAKTITR 243
             QR A    LA+  +  C     S   P + G +L+ +R  A+       V H     R
Sbjct: 160 QQQRVAIARALALKPDILCFDEPTSALDPELTGEVLKVIRSLAQQNTTMIIVTHEMAFAR 219

Query: 244 EIADAALL 251
           ++AD  + 
Sbjct: 220 DVADQVIF 227


>gi|303273578|ref|XP_003056149.1| cell division cycle protein 48 [Micromonas pusilla CCMP1545]
 gi|226462233|gb|EEH59525.1| cell division cycle protein 48 [Micromonas pusilla CCMP1545]
          Length = 823

 Score = 44.3 bits (103), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 519 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCV 578

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 579 LFFDELDSIA 588



 Score = 37.7 bits (86), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 246 ILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 305

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 306 IFIDEIDSIA 315


>gi|268532972|ref|XP_002631614.1| C. briggsae CBR-MAC-1 protein [Caenorhabditis briggsae]
 gi|187023067|emb|CAP37746.1| CBR-MAC-1 protein [Caenorhabditis briggsae AF16]
          Length = 826

 Score = 44.3 bits (103), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT LA+ VA E G+NF S  GP
Sbjct: 584 ILLCGPPGCGKTLLAKAVANETGMNFISVKGP 615


>gi|325336547|gb|ADZ12821.1| DNA polymerase III, gamma/tau subunits [Riemerella anatipestifer
           RA-GD]
          Length = 347

 Score = 44.3 bits (103), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 99/221 (44%), Gaps = 23/221 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  +   GQ    S++   +E A A  +    +LF GP G+GKTT A+++AR++    
Sbjct: 12  RPQEFDTVVGQ----SHITDTLEHAIAENQLAQALLFCGPRGVGKTTCARILARKINEKD 67

Query: 83  RSTSG--------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI-IVEEILYPAMEDFQ 133
            +TS          + A + +    +  L D+ V +  ++ +  + I++E+   + + F 
Sbjct: 68  GATSEDGFSYNIFELDAASNNSVDDIRELTDQ-VRYAPQVGKYKVYIIDEVHMLSSQAFN 126

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
             L   E P A ++         I ATT    +   +  R  I        IED++  ++
Sbjct: 127 AFLKTLEEPPAHAI--------FILATTEKHKIIPTILSRCQI-YDFKRITIEDIQAHLR 177

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
           + A   G++  D+A   IA ++ G  R A  +  R+  F +
Sbjct: 178 KIADKEGISYEDDALFLIAQKADGALRDALSIFDRLVTFTQ 218


>gi|301091915|ref|XP_002896132.1| cell division control protein 48 [Phytophthora infestans T30-4]
 gi|262094952|gb|EEY53004.1| cell division control protein 48 [Phytophthora infestans T30-4]
          Length = 804

 Score = 44.3 bits (103), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ VA E   NF S  GP +     G+  A +  + D+       V
Sbjct: 509 VLFYGPPGCGKTLLAKAVANECQANFISIKGPELLTMWFGESEANVREVFDKARGAAPCV 568

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 569 LFFDELDSIA 578



 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           VL  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 236 VLLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNAPAI 295

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 296 IFIDEIDSIA 305


>gi|237739475|ref|ZP_04569956.1| DNA polymerase III gamma and tau [Fusobacterium sp. 2_1_31]
 gi|229423083|gb|EEO38130.1| DNA polymerase III gamma and tau [Fusobacterium sp. 2_1_31]
          Length = 485

 Score = 44.3 bits (103), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 101/227 (44%), Gaps = 32/227 (14%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP +  E +G+ E   +LK+ ++  K+ A A    LF GP G+GKTT+A+++A+  GVN 
Sbjct: 10  RPSSFSEVSGENEIVKSLKLSLKN-KSMAHAY---LFSGPRGVGKTTIARLIAK--GVNC 63

Query: 83  RS--TSGPVIAKAGDLAAL-------LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
            +    G    +  +  A+       L  ++      IDEI  L    E+I Y  +E  +
Sbjct: 64  LNLGEDGEPCNECKNCKAINEGRFSDLIEIDAASNRSIDEIRSLK---EKINYQPVEGLK 120

Query: 134 LDLMVGEGPSARSVKINL---------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNF-- 182
              ++ E         N          S    I ATT +  +   +  R     R +F  
Sbjct: 121 KVYIIDEAHMLTKEAFNALLKTLEEPPSHVMFILATTELDKILPTIISRCQ---RYDFKA 177

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
            +IED+K+ ++   K   L+++DE    I   S G+ R +  +L R+
Sbjct: 178 LDIEDMKSGLKHILKEENLSMSDEVYPLIYENSSGSMRDSISILERL 224


>gi|118121359|ref|XP_428317.2| PREDICTED: hypothetical protein [Gallus gallus]
          Length = 546

 Score = 44.3 bits (103), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 254 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 313

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 314 LFFDELDSIA 323


>gi|17531535|ref|NP_496273.1| Cell Division Cycle related family member (cdc-48.1)
           [Caenorhabditis elegans]
 gi|1729896|sp|P54811|TERA1_CAEEL RecName: Full=Transitional endoplasmic reticulum ATPase homolog 1;
           AltName: Full=Cell division cycle-related protein 48.1;
           AltName: Full=p97/CDC48 homolog 1
 gi|3874005|emb|CAA90050.1| C. elegans protein C06A1.1, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 809

 Score = 44.3 bits (103), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 520 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCV 579

Query: 109 LFIDEIHRL 117
           LF DE+  +
Sbjct: 580 LFFDELDSI 588



 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-----AGDLAALLTNLEDRD--V 108
           +L  GPPG GKT +A+ VA E G  F   +GP V++K       +L       E     +
Sbjct: 247 ILLFGPPGTGKTLIARAVANETGSFFFLINGPEVMSKMSGESESNLRKAFEECEKNQPAI 306

Query: 109 LFIDEI 114
           LFIDEI
Sbjct: 307 LFIDEI 312


>gi|16079872|ref|NP_390698.1| class III heat-shock ATP-dependent LonA protease [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|221310760|ref|ZP_03592607.1| class III heat-shock ATP-dependent Lon protease [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|221315085|ref|ZP_03596890.1| class III heat-shock ATP-dependent Lon protease [Bacillus subtilis
           subsp. subtilis str. NCIB 3610]
 gi|221320004|ref|ZP_03601298.1| class III heat-shock ATP-dependent Lon protease [Bacillus subtilis
           subsp. subtilis str. JH642]
 gi|221324286|ref|ZP_03605580.1| class III heat-shock ATP-dependent Lon protease [Bacillus subtilis
           subsp. subtilis str. SMY]
 gi|321312352|ref|YP_004204639.1| class III heat-shock ATP-dependent LonA protease [Bacillus subtilis
           BSn5]
 gi|585415|sp|P37945|LON1_BACSU RecName: Full=Lon protease 1; AltName: Full=ATP-dependent protease
           La 1
 gi|496557|emb|CAA53984.1| protease La [Bacillus subtilis subsp. subtilis str. 168]
 gi|1770078|emb|CAA99540.1| ATP-dependent Lon protease [Bacillus subtilis]
 gi|2635285|emb|CAB14780.1| class III heat-shock ATP-dependent LonA protease [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|320018626|gb|ADV93612.1| class III heat-shock ATP-dependent LonA protease [Bacillus subtilis
           BSn5]
          Length = 774

 Score = 44.3 bits (103), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 76/197 (38%), Gaps = 58/197 (29%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF------------------RSTSGPV-------IA 91
           +   GPPG+GKT+LA+ +A+ LG  F                  R+  G +       + 
Sbjct: 350 LCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMK 409

Query: 92  KAGDLAALLTNLEDRDVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPS 143
           KAG L           V  +DEI ++        S  + E+L P       D  + E   
Sbjct: 410 KAGKLNP---------VFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEE--- 457

Query: 144 ARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL---------KTIVQR 194
                 +LS+   IA    +  +  PL+DR  I     + EIE L         K I + 
Sbjct: 458 ----TFDLSKVLFIATANNLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHLLPKQIKEH 513

Query: 195 GAKLTGLAVTDEAACEI 211
           G K + L + D+A  +I
Sbjct: 514 GLKKSNLQLRDQAILDI 530


>gi|322822657|gb|EFZ28645.1| RuvB-like DNA helicase, putative [Trypanosoma cruzi]
          Length = 459

 Score = 44.3 bits (103), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 31/50 (62%)

Query: 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
          F GQV+A     + +E  +++  A   +LF GPPG GKT LA  +A+ELG
Sbjct: 42 FVGQVKAREAAGIVVELTRSKKMAGRALLFAGPPGTGKTALALGIAKELG 91


>gi|307243655|ref|ZP_07525796.1| recombination factor protein RarA [Peptostreptococcus stomatis DSM
           17678]
 gi|306492965|gb|EFM64977.1| recombination factor protein RarA [Peptostreptococcus stomatis DSM
           17678]
          Length = 423

 Score = 44.3 bits (103), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 14/140 (10%)

Query: 23  RPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           RP  +E+  GQ         L   IE A        +++F GPPG+GKTT+A+++A    
Sbjct: 8   RPTRIEDVVGQKHIIGRGRLLNNMIEKA-----YFPNMIFFGPPGVGKTTVAEIIAARAD 62

Query: 80  VNFR--STSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLD 135
             F   + S   I     + A + NL+ +   +L+IDEI   +   ++ +   +E+ Q+ 
Sbjct: 63  KKFFKINASNSSIDDIKRVIASIGNLDAQKGILLYIDEIQSFNKKQQQSILEFIENGQIS 122

Query: 136 LMVG--EGPSARSVKINLSR 153
           L+    E P     K  LSR
Sbjct: 123 LIASTTENPYHYVYKAILSR 142


>gi|258511533|ref|YP_003184967.1| AAA ATPase central domain-containing protein [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478259|gb|ACV58578.1| AAA ATPase central domain protein [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 329

 Score = 44.3 bits (103), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 79/181 (43%), Gaps = 37/181 (20%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI-AKAGDLAALL---TNLEDRD---- 107
           H++F G PG GKTT+A+++AR          G ++  +  DL       T  + R+    
Sbjct: 105 HMIFYGNPGTGKTTVARILARMFHECGLLEKGHLVEVERADLVGEYIGHTAQKTREQIQK 164

Query: 108 ----VLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLSRFT 155
               VLFIDE + L+   E        + L  AMED + +L+V      R ++  LS   
Sbjct: 165 ALGGVLFIDEAYSLARGGEKDFGREAIDCLVKAMEDHKHELIVILAGYEREMRWFLS--- 221

Query: 156 LIAATTRVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMR 214
                      TNP L  RF I IR   Y ++ L  I ++        +T EA  E A+R
Sbjct: 222 -----------TNPGLPSRFPIQIRFPDYGVDQLVQIAKKTLATRDYRMTAEA--EWALR 268

Query: 215 S 215
           S
Sbjct: 269 S 269


>gi|225561602|gb|EEH09882.1| cell division control protein [Ajellomyces capsulatus G186AR]
          Length = 751

 Score = 44.3 bits (103), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ VA E   NF S  GP
Sbjct: 462 VLFYGPPGTGKTLLAKAVANECAANFISVKGP 493



 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 257 ILMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 316

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 317 IFIDEIDSIA 326


>gi|209524864|ref|ZP_03273410.1| Vesicle-fusing ATPase [Arthrospira maxima CS-328]
 gi|209494743|gb|EDZ95052.1| Vesicle-fusing ATPase [Arthrospira maxima CS-328]
          Length = 610

 Score = 44.3 bits (103), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 42/75 (56%), Gaps = 8/75 (10%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDRD-- 107
           E    VL VGPPG GKT  A+ +A ELGVN+ +  GP VI K  G+    L  + ++   
Sbjct: 122 EPTHGVLLVGPPGTGKTLTARALAEELGVNYIALVGPEVITKYYGEAEQKLRAIFEKAAK 181

Query: 108 ----VLFIDEIHRLS 118
               ++FIDEI  L+
Sbjct: 182 NAPCIIFIDEIDSLA 196



 Score = 40.0 bits (92), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 8/79 (10%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLT 101
           + +A A   +L  GPPG GKT LA+ VA +   NF   +GP      V A    +  L  
Sbjct: 384 ETKARAPKGILLWGPPGTGKTLLAKAVASQARANFIGINGPDLLSRWVGASEQAVRELFA 443

Query: 102 NLEDRD--VLFIDEIHRLS 118
                D  V+FIDE+  L+
Sbjct: 444 KARQADPCVIFIDELDTLA 462


>gi|153854552|ref|ZP_01995822.1| hypothetical protein DORLON_01817 [Dorea longicatena DSM 13814]
 gi|149752861|gb|EDM62792.1| hypothetical protein DORLON_01817 [Dorea longicatena DSM 13814]
          Length = 419

 Score = 44.3 bits (103), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 28/130 (21%)

Query: 17  ADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEA---------LDHVLFVGP 62
           +DI+LL+P  ++ F      GQ EA   L V +     R  +           ++L +GP
Sbjct: 61  SDINLLKPEEIKAFLDEYVIGQDEAKKVLSVAVYNHYKRVMSGKELGVELGKSNILMLGP 120

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRD-------V 108
            G GKT LAQ +A+ LGV F       + +AG +   + N+        D D       +
Sbjct: 121 TGCGKTLLAQTLAKILGVPFAIADATALTEAGYVGEDVENILLKIIQAADGDIERAEYGI 180

Query: 109 LFIDEIHRLS 118
           ++IDEI +++
Sbjct: 181 IYIDEIDKIT 190


>gi|119944996|ref|YP_942676.1| cell division protein CDC48 [Psychromonas ingrahamii 37]
 gi|119863600|gb|ABM03077.1| cell division control protein 48 ATPase of AAA family CDC48
           subfamily [Psychromonas ingrahamii 37]
          Length = 732

 Score = 44.3 bits (103), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 8/75 (10%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR--- 106
           +A   VL  GPPG GKT +A+++A E   NF S SGP I     G+  A L  + +    
Sbjct: 213 DAPKGVLIYGPPGCGKTLIARIIAHETEANFFSVSGPEIIHKFYGESEAHLRKIFEEAGR 272

Query: 107 ---DVLFIDEIHRLS 118
               ++FIDEI  ++
Sbjct: 273 KGPSIIFIDEIDAIA 287



 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 23/34 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG+GKT +A+ VA E GVN  S  GP +
Sbjct: 491 LLLCGPPGVGKTLIAKAVANESGVNVISVKGPAL 524


>gi|87307573|ref|ZP_01089717.1| DNA polymerase III gamma and tau subunits [Blastopirellula marina
           DSM 3645]
 gi|87289743|gb|EAQ81633.1| DNA polymerase III gamma and tau subunits [Blastopirellula marina
           DSM 3645]
          Length = 618

 Score = 44.3 bits (103), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 6/90 (6%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP++ EE  GQ +    LK  IE    R       LF G  G+GKT+ A+++A+ L    
Sbjct: 26  RPQSFEELVGQSQVAQALKNAIE----RGRVGHAYLFTGARGVGKTSSARILAKALNCQR 81

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID 112
             ++ P      D+   +T  ED DVL ID
Sbjct: 82  GPSATP--CNECDICRSVTVGEDVDVLEID 109


>gi|291485235|dbj|BAI86310.1| class III heat-shock ATP-dependent Lon protease [Bacillus subtilis
           subsp. natto BEST195]
          Length = 774

 Score = 44.3 bits (103), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 76/197 (38%), Gaps = 58/197 (29%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF------------------RSTSGPV-------IA 91
           +   GPPG+GKT+LA+ +A+ LG  F                  R+  G +       + 
Sbjct: 350 LCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMK 409

Query: 92  KAGDLAALLTNLEDRDVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPS 143
           KAG L           V  +DEI ++        S  + E+L P       D  + E   
Sbjct: 410 KAGKLNP---------VFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEE--- 457

Query: 144 ARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL---------KTIVQR 194
                 +LS+   IA    +  +  PL+DR  I     + EIE L         K I + 
Sbjct: 458 ----TFDLSKVLFIATANNLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHLLPKQIKEH 513

Query: 195 GAKLTGLAVTDEAACEI 211
           G K + L + D+A  +I
Sbjct: 514 GLKKSNLQLRDQAILDI 530


>gi|238924362|ref|YP_002937878.1| putative amino acid ABC transporter, ATP-binding protein
           [Eubacterium rectale ATCC 33656]
 gi|238876037|gb|ACR75744.1| putative amino acid ABC transporter, ATP-binding protein
           [Eubacterium rectale ATCC 33656]
          Length = 261

 Score = 44.3 bits (103), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 58/248 (23%), Positives = 96/248 (38%), Gaps = 36/248 (14%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +++L  R +E+  G+     ++   +E   A A        +G  G GKTTL + +    
Sbjct: 1   MAILEVRNIEKHFGRTNVLKDVSFSMEEGNALA-------IIGSSGSGKTTLLRCL---- 49

Query: 79  GVNF--RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI----LYPAMEDF 132
             NF  R  SG +I     L       +D+D     +     ++ ++      Y A+E+ 
Sbjct: 50  --NFLERPDSGQIIVNGETLFDASEAGKDKDAELRKKRLHFGMVFQQFNLFPQYTALENV 107

Query: 133 QLD--LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
            L   L+  E P  +  K         A  TR+      L DR G+  R+N Y  +    
Sbjct: 108 TLAERLLAQETPEFKKDKK--------AILTRIDEHGKELLDRMGLAERMNHYPHQLSGG 159

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE-------VAHAKTITR 243
             QR A    LA+  +  C     S   P + G +L+ +R  A+       V H     R
Sbjct: 160 QQQRVAIARALALKPDILCFDEPTSALDPELTGEVLKVIRSLAQQNTTMIIVTHEMAFAR 219

Query: 244 EIADAALL 251
           ++AD  + 
Sbjct: 220 DVADQVIF 227


>gi|156938218|ref|YP_001436014.1| ATPase AAA [Ignicoccus hospitalis KIN4/I]
 gi|156567202|gb|ABU82607.1| AAA family ATPase, CDC48 subfamily [Ignicoccus hospitalis KIN4/I]
          Length = 729

 Score = 44.3 bits (103), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 51/115 (44%), Gaps = 16/115 (13%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
           T E+     EA   L+  +E      E   H        VL  GPPG GKT LA+ +A E
Sbjct: 187 TWEDIGDLEEAKERLREIVELPMKHPEIFRHLGIEPPKGVLLYGPPGTGKTMLAKALANE 246

Query: 78  LGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DVLFIDEIHRLSIIVEEI 124
           +G  F + +GP I     G+    L  + +        ++FIDEI  ++   EE+
Sbjct: 247 IGAYFIAINGPEIMSKYYGESEQRLREIFEEARKNAPSIIFIDEIDAIAPKREEV 301



 Score = 36.6 bits (83), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 20/34 (58%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT LA+  A E   NF +  GP I
Sbjct: 502 ILLFGPPGTGKTLLAKAAATESQANFIAVRGPEI 535


>gi|170290625|ref|YP_001737441.1| DNA replication ATPase HolB small subunit [Candidatus Korarchaeum
          cryptofilum OPF8]
 gi|170174705|gb|ACB07758.1| ATPase involved in DNA replication HolB, small subunit
          [Candidatus Korarchaeum cryptofilum OPF8]
          Length = 331

 Score = 44.3 bits (103), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+TL++  GQ +    LK F+E       ++ H+LF GP G GKTT A  +A +L
Sbjct: 11 RPKTLDDVVGQDDIIRALKGFVEK-----RSMPHLLFAGPAGTGKTTTALALANDL 61


>gi|156087400|ref|XP_001611107.1| cell division protein metalloprotease FtsH [Babesia bovis T2Bo]
 gi|154798360|gb|EDO07539.1| cell division protein metalloprotease FtsH, putative [Babesia
           bovis]
          Length = 658

 Score = 44.3 bits (103), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL------EDRDV 108
           VL VGPPG GKT LA+ VA E  + F  TSGP   +   G  A  + NL      +   +
Sbjct: 251 VLLVGPPGTGKTMLAKAVATEANIPFIYTSGPEFVEIFVGQGAQRVRNLFAKARKQAPCI 310

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 311 VFIDEI 316


>gi|329765851|ref|ZP_08257417.1| ATPase central domain-containing protein [Candidatus
           Nitrosoarchaeum limnia SFB1]
 gi|329137694|gb|EGG41964.1| ATPase central domain-containing protein [Candidatus
           Nitrosoarchaeum limnia SFB1]
          Length = 364

 Score = 44.3 bits (103), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 9/98 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+ + +  G  E+ S++   IE      +    +L VGPPG+GKTT+A + A++ G + 
Sbjct: 7   RPQNISDMIGNEESRSSI---IEWFTKWKKGTKPLLLVGPPGIGKTTIAYITAKQFGYDV 63

Query: 83  RSTSGPVIAKAGDLAALLT------NLEDRDVLFIDEI 114
              +   +     +  +LT      +L    ++FIDE+
Sbjct: 64  VGLNASDVRSKSRINEILTPVLGNVSLLGIPMIFIDEV 101


>gi|322504519|emb|CAM37646.2| putative peroxisome assembly protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 959

 Score = 44.3 bits (103), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ VA E+ +NF    GP
Sbjct: 684 VLFYGPPGCGKTLLAKAVATEMNMNFMFVKGP 715


>gi|294783460|ref|ZP_06748784.1| DNA polymerase III, gamma/tau subunit [Fusobacterium sp. 1_1_41FAA]
 gi|294480338|gb|EFG28115.1| DNA polymerase III, gamma/tau subunit [Fusobacterium sp. 1_1_41FAA]
          Length = 482

 Score = 44.3 bits (103), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 101/227 (44%), Gaps = 32/227 (14%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP +  E +G+ E   +LK+ ++  K+ A A    LF GP G+GKTT+A+++A+  GVN 
Sbjct: 10  RPSSFSEVSGENEIVKSLKLSLKN-KSMAHAY---LFSGPRGVGKTTIARLIAK--GVNC 63

Query: 83  RS--TSGPVIAKAGDLAAL-------LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
            +    G    +  +  A+       L  ++      IDEI  L    E+I Y  +E  +
Sbjct: 64  LNLGEDGEPCNECKNCKAINEGRFSDLIEIDAASNRSIDEIRSLK---EKINYQPVEGLK 120

Query: 134 LDLMVGEGPSARSVKINL---------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNF-- 182
              ++ E         N          S    I ATT +  +   +  R     R +F  
Sbjct: 121 KVYIIDEAHMLTKEAFNALLKTLEEPPSHVMFILATTELDKILPTIISRCQ---RYDFKA 177

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
            +IED+K+ ++   K   L+++DE    I   S G+ R +  +L R+
Sbjct: 178 LDIEDMKSGLKHILKEENLSMSDEVYPLIYENSSGSMRDSISILERL 224


>gi|284054153|ref|ZP_06384363.1| AAA ATPase, central region [Arthrospira platensis str. Paraca]
          Length = 622

 Score = 44.3 bits (103), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 42/75 (56%), Gaps = 8/75 (10%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDRD-- 107
           E    VL VGPPG GKT  A+ +A ELGVN+ +  GP VI K  G+    L  + ++   
Sbjct: 134 EPTHGVLLVGPPGTGKTLTARALAEELGVNYIALVGPEVITKYYGEAEQKLRAIFEKAAK 193

Query: 108 ----VLFIDEIHRLS 118
               ++FIDEI  L+
Sbjct: 194 NAPCIIFIDEIDSLA 208



 Score = 40.0 bits (92), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 8/79 (10%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLT 101
           + +A A   +L  GPPG GKT LA+ VA +   NF   +GP      V A    +  L  
Sbjct: 396 ETKARAPKGILLWGPPGTGKTLLAKAVASQARANFIGINGPDLLSRWVGASEQAVRELFA 455

Query: 102 NLEDRD--VLFIDEIHRLS 118
                D  V+FIDE+  L+
Sbjct: 456 KARQADPCVIFIDELDTLA 474


>gi|159472777|ref|XP_001694521.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158276745|gb|EDP02516.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 580

 Score = 44.3 bits (103), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 44/88 (50%), Gaps = 16/88 (18%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL--EDRD----V 108
           VL  GPPG GKT LA  +A E GV F   S P I    +G+  A L  L  E R+    +
Sbjct: 19  VLLHGPPGCGKTALANAIANECGVPFLRVSAPEIVSGMSGESEAKLRQLFNEARELAPCI 78

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           +FIDEI        + ++P  E  Q ++
Sbjct: 79  VFIDEI--------DAIFPKRETAQREM 98



 Score = 42.4 bits (98), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 20/36 (55%), Positives = 22/36 (61%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           A   VL  GPPG GKT +A+ VA E G NF S  GP
Sbjct: 346 AASGVLLYGPPGCGKTLVAKAVANESGANFISIKGP 381


>gi|149641609|ref|XP_001512479.1| PREDICTED: similar to nuclear VCP-like protein NVLp.2
           [Ornithorhynchus anatinus]
          Length = 677

 Score = 44.3 bits (103), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT LA+ VA E G+NF S  GP
Sbjct: 439 ILLAGPPGCGKTLLAKAVANESGLNFISVKGP 470


>gi|73971212|ref|XP_866054.1| PREDICTED: similar to valosin-containing protein isoform 4 [Canis
           familiaris]
          Length = 761

 Score = 44.3 bits (103), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 469 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 528

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 529 LFFDELDSIA 538



 Score = 37.0 bits (84), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT +A+ VA E G  F   +GP I
Sbjct: 196 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 229


>gi|71415208|ref|XP_809678.1| RuvB-like DNA helicase [Trypanosoma cruzi strain CL Brener]
 gi|70874098|gb|EAN87827.1| RuvB-like DNA helicase, putative [Trypanosoma cruzi]
          Length = 459

 Score = 44.3 bits (103), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 31/50 (62%)

Query: 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
          F GQV+A     + +E  +++  A   +LF GPPG GKT LA  +A+ELG
Sbjct: 42 FVGQVKAREAAGIVVELTRSKKMAGRALLFAGPPGTGKTALALGIAKELG 91


>gi|327264770|ref|XP_003217184.1| PREDICTED: transitional endoplasmic reticulum ATPase-like [Anolis
           carolinensis]
          Length = 975

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       +
Sbjct: 675 VLFYGPPGCGKTLLAKAIANECQANFVSIKGPELLTMWFGESEANVRDVFDKARQAAPCI 734

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 735 LFFDELDSIA 744



 Score = 36.6 bits (83), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 402 ILLYGPPGTGKTLVARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 461

Query: 109 LFIDEI 114
           +FIDE+
Sbjct: 462 IFIDEL 467


>gi|301061956|ref|ZP_07202683.1| cell division protease FtsH [delta proteobacterium NaphS2]
 gi|300443939|gb|EFK07977.1| cell division protease FtsH [delta proteobacterium NaphS2]
          Length = 611

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 50/107 (46%), Gaps = 15/107 (14%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78
           T E+  G  EA   L   IE  K  A   +        VL VGPPG GKT LA+ VA E 
Sbjct: 155 TFEDAAGVDEAKQELVEVIEFLKEPARFTELGGRMPKGVLLVGPPGTGKTLLAKAVAGES 214

Query: 79  GVNFRSTSGPVIAK------AGDLAALLTNLEDRD--VLFIDEIHRL 117
           GV F S SG    +      A  +  L T  +++   ++FIDE+  L
Sbjct: 215 GVPFFSLSGSEFVEMFVGLGAARVRDLFTQAKEKSPCIIFIDELDAL 261


>gi|194225438|ref|XP_001498145.2| PREDICTED: similar to valosin [Equus caballus]
          Length = 822

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 532 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 591

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 592 LFFDELDSIA 601



 Score = 37.0 bits (84), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT +A+ VA E G  F   +GP I
Sbjct: 259 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 292


>gi|56758882|gb|AAW27581.1| SJCHGC09453 protein [Schistosoma japonicum]
          Length = 802

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 511 VLFYGPPGCGKTLLAKAIASECQANFISIKGPELLTMWFGESEANVRDIFDKARQAAPCV 570

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 571 LFFDELDSIA 580


>gi|257051069|sp|P23787|TERA_XENLA RecName: Full=Transitional endoplasmic reticulum ATPase; Short=TER
           ATPase; AltName: Full=15S Mg(2+)-ATPase p97 subunit;
           Short=p97; AltName: Full=Valosin-containing protein;
           Short=VCP
 gi|28422362|gb|AAH46949.1| Vcp-prov protein [Xenopus laevis]
          Length = 805

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 573

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 574 LFFDELDSIA 583



 Score = 37.0 bits (84), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT +A+ VA E G  F   +GP I
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274


>gi|54020867|ref|NP_001005677.1| transitional endoplasmic reticulum ATPase [Xenopus (Silurana)
           tropicalis]
 gi|82183742|sp|Q6GL04|TERA_XENTR RecName: Full=Transitional endoplasmic reticulum ATPase; Short=TER
           ATPase; AltName: Full=15S Mg(2+)-ATPase p97 subunit;
           Short=p97; AltName: Full=Valosin-containing protein;
           Short=VCP
 gi|49257794|gb|AAH74716.1| valosin-containing protein [Xenopus (Silurana) tropicalis]
          Length = 805

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 573

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 574 LFFDELDSIA 583



 Score = 37.0 bits (84), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT +A+ VA E G  F   +GP I
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274


>gi|71661573|ref|XP_817806.1| RuvB-like DNA helicase [Trypanosoma cruzi strain CL Brener]
 gi|70883019|gb|EAN95955.1| RuvB-like DNA helicase, putative [Trypanosoma cruzi]
          Length = 459

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 39/64 (60%), Gaps = 2/64 (3%)

Query: 16 DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
          DAD S  +P + + F GQV+A     + +E  +++  A   +LF GPPG GKT LA  +A
Sbjct: 30 DADGSA-KP-SADGFVGQVKAREAAGIVVELTRSKKMAGRALLFAGPPGTGKTALALGIA 87

Query: 76 RELG 79
          +ELG
Sbjct: 88 KELG 91


>gi|332228697|ref|XP_003263530.1| PREDICTED: transitional endoplasmic reticulum ATPase-like [Nomascus
           leucogenys]
          Length = 791

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 499 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 558

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 559 LFFDELDSIA 568



 Score = 37.0 bits (84), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 226 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 285

Query: 109 LFIDEIHRLS 118
           +FIDE+  ++
Sbjct: 286 IFIDELDAIA 295


>gi|73971226|ref|XP_866167.1| PREDICTED: similar to Transitional endoplasmic reticulum ATPase
           (TER ATPase) (15S Mg(2+)-ATPase p97 subunit)
           (Valosin-containing protein) (VCP) isoform 11 [Canis
           familiaris]
          Length = 776

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 573

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 574 LFFDELDSIA 583



 Score = 37.0 bits (84), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT +A+ VA E G  F   +GP I
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274


>gi|15231775|ref|NP_190891.1| cell division cycle protein 48, putative / CDC48, putative
           [Arabidopsis thaliana]
 gi|28201772|sp|Q9SCN8|CD48D_ARATH RecName: Full=Cell division control protein 48 homolog D;
           Short=AtCDC48d; AltName: Full=Transitional endoplasmic
           reticulum ATPase D
 gi|6630743|emb|CAB64226.1| CDC48-like protein [Arabidopsis thaliana]
 gi|110737510|dbj|BAF00697.1| CDC48 - like protein [Arabidopsis thaliana]
 gi|332645529|gb|AEE79050.1| cell division control protein 48-D [Arabidopsis thaliana]
          Length = 815

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 518 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQSAPCV 577

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 578 LFFDELDSIA 587



 Score = 39.3 bits (90), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 245 ILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 304

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 305 IFIDEIDSIA 314


>gi|149609398|ref|XP_001520419.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus]
          Length = 805

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 513 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 572

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 573 LFFDELDSIA 582



 Score = 37.0 bits (84), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT +A+ VA E G  F   +GP I
Sbjct: 240 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 273


>gi|153832218|ref|ZP_01984885.1| ATPase involved in DNA repair [Vibrio harveyi HY01]
 gi|148871529|gb|EDL70384.1| ATPase involved in DNA repair [Vibrio harveyi HY01]
          Length = 1620

 Score = 44.3 bits (103), Expect = 0.026,   Method: Composition-based stats.
 Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 12/101 (11%)

Query: 1    MMDREGLLSRNVSQEDADISLLRPRTLEEFT-GQVEACSNLKVFIE---------AAKAR 50
            +  R  LLS   ++ED  +S  +PR L  F   ++ + S L +  +           K R
Sbjct: 1198 LSQRTQLLS--CAKEDFRLSEFKPRPLTSFVRNKLISESYLPLIGDNFAKQMGTLGDKKR 1255

Query: 51   AEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA 91
             + +  +L + PPG GKTTL + VA +LG+ F   +GP I 
Sbjct: 1256 TDLMGMLLLISPPGYGKTTLIEYVAHKLGLVFMKINGPSIG 1296


>gi|154334731|ref|XP_001563612.1| peroxisome assembly protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 959

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ VA E+ +NF    GP
Sbjct: 684 VLFYGPPGCGKTLLAKAVATEMNMNFMFVKGP 715


>gi|121807781|sp|Q2V573|LONP2_PICAN RecName: Full=Lon protease homolog 2, peroxisomal
 gi|82659607|gb|ABB88892.1| peroxisomal Lon protease [Pichia angusta]
          Length = 935

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 96/227 (42%), Gaps = 47/227 (20%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA----------------ALL 100
           +L  GPPG+GKT+LA+ +A  LG  F+  S   +    DL                 AL 
Sbjct: 448 LLLTGPPGVGKTSLARSIATTLGRKFQRISVGGLNDFADLKGHRRTYVGAIPGLIVQALR 507

Query: 101 TNLEDRDVLFIDEIHRL---------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINL 151
            +     V+ +DE+ ++            + EIL P       D  +G         I+L
Sbjct: 508 RSQSMNPVILLDEVDKIGSNSRKGDPEAALLEILDPEQNTNFHDHYIG-------FPIDL 560

Query: 152 SRFTLIAATTRVGLLTNPLQDRFGIPIRL---NFYEIEDL--KTIVQRGAKLTGL----- 201
           S+   +  +  +  L++PL+DR  + I L   N+ E  ++  K ++ R  +  GL     
Sbjct: 561 SQILFVCTSNDLWQLSDPLRDRMEV-IELAGYNYMEKVEISKKYLIPRQLERAGLSSDAV 619

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           A+ DE   ++A      P I  R L R+   A +   K + R++ +A
Sbjct: 620 AMDDETILKMATHYTSEPGI--RNLERL--IAAICRGKAVERQMGEA 662


>gi|73961501|ref|XP_537239.2| PREDICTED: similar to Nuclear valosin-containing protein-like
           (Nuclear VCP-like protein) (NVLp) [Canis familiaris]
          Length = 955

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E G+NF S  GP
Sbjct: 685 VLLAGPPGCGKTLLAKAVANESGLNFISVKGP 716


>gi|74198702|dbj|BAE39824.1| unnamed protein product [Mus musculus]
          Length = 806

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 573

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 574 LFFDELDSIA 583



 Score = 37.0 bits (84), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT +A+ VA E G  F   +GP I
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274


>gi|330507468|ref|YP_004383896.1| replication factor C small subunit [Methanosaeta concilii GP-6]
 gi|328928276|gb|AEB68078.1| replication factor C small subunit [Methanosaeta concilii GP-6]
          Length = 323

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 18/132 (13%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           +E+  I   RP  L++  GQ E    LK ++     +   L H+LF GPPG+GKT  +  
Sbjct: 4   KEEIWIEKYRPERLDDIVGQDEIVRRLKSYV-----KTRNLPHLLFSGPPGVGKTAASIS 58

Query: 74  VAREL-GVNFRSTSGPVIA-----------KAGDLAALLTNLE-DRDVLFIDEIHRLSII 120
           + +E+ G  +R+    + A           K  D A +    E D  V+F+DE   L+  
Sbjct: 59  IVKEIFGETWRNNFIELNASDERGIDIIRHKVKDFARMAPLGEADFKVIFLDEADALTND 118

Query: 121 VEEILYPAMEDF 132
            +  L   ME +
Sbjct: 119 AQSALRRTMERY 130


>gi|330038957|ref|XP_003239746.1| cell division control protein 48 [Cryptomonas paramecium]
 gi|327206671|gb|AEA38848.1| cell division control protein 48 [Cryptomonas paramecium]
          Length = 753

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ +A E   NF S  GP
Sbjct: 498 VLFYGPPGCGKTLLAKAIANECQANFISIKGP 529


>gi|166031008|ref|ZP_02233837.1| hypothetical protein DORFOR_00689 [Dorea formicigenerans ATCC
           27755]
 gi|166029275|gb|EDR48032.1| hypothetical protein DORFOR_00689 [Dorea formicigenerans ATCC
           27755]
          Length = 423

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 61/130 (46%), Gaps = 28/130 (21%)

Query: 17  ADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEAL---------DHVLFVGP 62
           +DI+LL+P  ++EF      GQ EA   L V +     R  A           ++L +GP
Sbjct: 65  SDINLLKPEEIKEFLDDYVIGQDEAKKVLSVAVYNHYKRIMAQRDLGVELNKSNILMLGP 124

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---EDRD-------V 108
            G GKT LAQ +A+ L V F       + +AG    D+  +L  L    D D       +
Sbjct: 125 TGCGKTLLAQSLAKILNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDIERAEYGI 184

Query: 109 LFIDEIHRLS 118
           +++DEI +++
Sbjct: 185 IYLDEIDKIT 194


>gi|148670553|gb|EDL02500.1| valosin containing protein, isoform CRA_a [Mus musculus]
          Length = 814

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 573

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 574 LFFDELDSIA 583



 Score = 37.0 bits (84), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT +A+ VA E G  F   +GP I
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274


>gi|26326751|dbj|BAC27119.1| unnamed protein product [Mus musculus]
          Length = 806

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 573

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 574 LFFDELDSIA 583



 Score = 37.0 bits (84), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT +A+ VA E G  F   +GP I
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274


>gi|330836935|ref|YP_004411576.1| membrane protease FtsH catalytic subunit [Spirochaeta coccoides DSM
           17374]
 gi|329748838|gb|AEC02194.1| membrane protease FtsH catalytic subunit [Spirochaeta coccoides DSM
           17374]
          Length = 658

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 54/104 (51%), Gaps = 15/104 (14%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAK--ARAEAL-----DHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  GQ EA   L+  ++  K  AR + +       VL VGPPG GKT LA+ VA E 
Sbjct: 205 TFVDVAGQEEAKLELEEIVDFLKEPARFQKIGARIPKGVLLVGPPGTGKTLLAKAVAGEA 264

Query: 79  GVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEI 114
           GV+F  TSG    +   G  AA + +L ++       +LFIDE+
Sbjct: 265 GVSFFHTSGSDFVEMFVGMGAARVRDLFEQGRKNAPCILFIDEL 308


>gi|312134563|ref|YP_004001901.1| ATP-dependent metalloprotease ftsh [Caldicellulosiruptor owensensis
           OL]
 gi|311774614|gb|ADQ04101.1| ATP-dependent metalloprotease FtsH [Caldicellulosiruptor owensensis
           OL]
          Length = 616

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 48/95 (50%), Gaps = 11/95 (11%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           EE    ++   N + +IE     A     +L VGPPG GKT LA+ VA E GV F S SG
Sbjct: 178 EELREVIDFLKNPRKYIELG---ARIPKGILLVGPPGTGKTLLAKAVAGEAGVPFFSISG 234

Query: 88  PVIAK--AGDLAALLTNLEDRD------VLFIDEI 114
               +   G  AA + +L D+       V+FIDEI
Sbjct: 235 SDFVEMFVGVGAARVRDLFDQAKRNAPCVVFIDEI 269


>gi|269792562|ref|YP_003317466.1| ATP-dependent protease La [Thermanaerovibrio acidaminovorans DSM
           6589]
 gi|269100197|gb|ACZ19184.1| ATP-dependent protease La [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 781

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 88/354 (24%), Positives = 134/354 (37%), Gaps = 75/354 (21%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAK-----ARAEALDHVLFVGPPGL 65
           N +++  +I L +    E+  G  E    +  F+   K      RA+ L    FVGPPG+
Sbjct: 305 NQTKDRLEIGLAQQVLDEDHYGLKEVKDRIVEFLAVRKLAGNDVRAQVL---CFVGPPGV 361

Query: 66  GKTTLAQVVARELGVNFRSTS-GPVIAKA---GDLAALLTNLEDR------------DVL 109
           GKT+LA+ +AR L   F + S G V  +A   G     +  L  R             V+
Sbjct: 362 GKTSLARSIARALNRKFVNMSLGGVRDEAEIRGHRRTYVGALPGRIIQKMRVAGVKNPVM 421

Query: 110 FIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATT 161
            +DEI ++        S  + E+L P       D  +        V  +LSR   I    
Sbjct: 422 LLDEIDKIGADFRGDPSAALLEVLDPEQNHAFSDHFL-------EVPFDLSRVMFITTAN 474

Query: 162 RVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMR-SRGTPR 220
               +  PL DR  + I +  Y  E+   I  R   L    V +    ++ ++ S+GT  
Sbjct: 475 SHHTIPKPLLDRMEL-ISIPGYVAEEKVHIASR--HLWPRIVRENGLSDMGLKLSKGT-- 529

Query: 221 IAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV 280
               L R + D+         TRE              G   LD R L+ IAR      V
Sbjct: 530 ----LERIISDY---------TRE-------------AGVRNLD-RQLSKIARKVACARV 562

Query: 281 GIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR---LLMPIAWQHLGIDI 331
             E   A    PR     L++     +G+    P+G     ++ +AW   G D+
Sbjct: 563 AAEESGASFEAPRITTASLVKYLGAPKGYDTVIPQGSAVGAVVGLAWTETGGDV 616


>gi|224069527|ref|XP_002326365.1| predicted protein [Populus trichocarpa]
 gi|222833558|gb|EEE72035.1| predicted protein [Populus trichocarpa]
          Length = 810

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 520 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQSAPCV 579

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 580 LFFDELDSIA 589



 Score = 39.3 bits (90), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 247 ILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 306

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 307 IFIDEIDSIA 316


>gi|126334782|ref|XP_001368198.1| PREDICTED: similar to valosin [Monodelphis domestica]
          Length = 806

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 573

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 574 LFFDELDSIA 583



 Score = 37.0 bits (84), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT +A+ VA E G  F   +GP I
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274


>gi|169614385|ref|XP_001800609.1| hypothetical protein SNOG_10333 [Phaeosphaeria nodorum SN15]
 gi|111061548|gb|EAT82668.1| hypothetical protein SNOG_10333 [Phaeosphaeria nodorum SN15]
          Length = 734

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ VA E   NF S  GP
Sbjct: 531 VLFYGPPGTGKTLLAKAVANECAANFISIKGP 562



 Score = 38.1 bits (87), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 257 ILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 316

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 317 IFIDEIDSIA 326


>gi|26350783|dbj|BAC39028.1| unnamed protein product [Mus musculus]
          Length = 723

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 431 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 490

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 491 LFFDELDSIA 500



 Score = 37.0 bits (84), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 158 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 217

Query: 109 LFIDEIHRLS 118
           +FIDE+  ++
Sbjct: 218 IFIDELDAIA 227


>gi|314986604|gb|EFT30696.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL005PA2]
          Length = 429

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 58/135 (42%), Gaps = 37/135 (27%)

Query: 21  LLRPRTLEEF-----TGQVEACSNLKVFI---------EAAKARAE---------ALDHV 57
           L RPR L EF      GQ EA   L V +         EA   RA             ++
Sbjct: 62  LPRPRELCEFLDAWVIGQEEAKRTLSVAVYNHYKRIQSEANVPRARRAEDDGVELGKSNI 121

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------------- 103
           L +GP G GKT LAQ +AR+L V F       + +AG +   + N+              
Sbjct: 122 LMLGPTGCGKTYLAQTMARQLNVPFAMADATALTEAGYVGEDVENILLKLLQAADFDVKR 181

Query: 104 EDRDVLFIDEIHRLS 118
            +R +++IDEI +++
Sbjct: 182 AERGIVYIDEIDKVA 196


>gi|294495296|ref|YP_003541789.1| adenosinetriphosphatase [Methanohalophilus mahii DSM 5219]
 gi|292666295|gb|ADE36144.1| Adenosinetriphosphatase [Methanohalophilus mahii DSM 5219]
          Length = 473

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 8/76 (10%)

Query: 50  RAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDR- 106
           +AE    +L  GPPG GKT L++  A+EL  NF S +G  +++K  G+    L  L ++ 
Sbjct: 231 KAELPRGILLYGPPGTGKTMLSKAAAKELDANFYSINGSDILSKWYGESEKNLNTLFEKA 290

Query: 107 -----DVLFIDEIHRL 117
                 V+FIDEI  L
Sbjct: 291 KASSPSVIFIDEIDAL 306


>gi|171315515|ref|ZP_02904751.1| AAA ATPase central domain protein [Burkholderia ambifaria MEX-5]
 gi|171099352|gb|EDT44090.1| AAA ATPase central domain protein [Burkholderia ambifaria MEX-5]
          Length = 384

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 94/216 (43%), Gaps = 30/216 (13%)

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFID 112
           +GPPG+GKTTLA++ A      F + S  V+    D+   +   +D         +LF+D
Sbjct: 1   MGPPGVGKTTLARLTALAFDCEFIALSA-VLGGVKDIRESMEQAKDTLNRTGRHTILFVD 59

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           EIHR +   ++ L P +E   L   +G      S ++N    + + +  +V +L +    
Sbjct: 60  EIHRFNKGQQDALLPFVES-GLVTFIGATTENPSFEVN----SALLSRAQVYVLQS---- 110

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
                  LN  E+  L    Q  A L GLA  D+A   +   + G  R    LL + +  
Sbjct: 111 -------LNDDEMRQLLKRAQEIA-LDGLAFDDKAVDTLIGYADGDARRFLNLLEQAQTA 162

Query: 233 AEVAHAKTITREIADAALLRLA--IDKMG---FDQL 263
           A  +   TI  +   +A+   A   DK G   +DQ+
Sbjct: 163 ASSSRITTIDADFVSSAMTLNARRFDKGGDNFYDQI 198


>gi|15826905|ref|NP_301168.1| hypothetical protein ML0055 [Mycobacterium leprae TN]
 gi|221229383|ref|YP_002502799.1| hypothetical protein MLBr_00055 [Mycobacterium leprae Br4923]
 gi|7388384|sp|O33089|Y055_MYCLE RecName: Full=Uncharacterized protein ML0055
 gi|2370285|emb|CAA75205.1| hypothetical protein [Mycobacterium leprae]
 gi|13092452|emb|CAC29563.1| conserved hypothetical protein [Mycobacterium leprae]
 gi|219932490|emb|CAR70148.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
          Length = 573

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 62/133 (46%), Gaps = 26/133 (19%)

Query: 3   DREGLLSRNVSQEDADISLLRPRT-LEEF-----TGQVEACSNLKVFIEAAKARAEALDH 56
           DR+ LL++  ++ D  I L R +T +E +       +V A   +KV        A+   H
Sbjct: 278 DRDRLLTQAQAELDRQIGLTRVKTQIERYRAATMMAKVRAAKGMKV--------AQPSKH 329

Query: 57  VLFVGPPGLGKTTLAQVVAREL-GVNFRSTSGPVIAKAGDL-----------AALLTNLE 104
           ++F GPPG GKTT+A+VVA  L G+   S    V     D            AA   +L 
Sbjct: 330 MIFTGPPGTGKTTIARVVANILAGLGVISEPKLVETSRKDFVAEYEGQSAVKAAKTIDLA 389

Query: 105 DRDVLFIDEIHRL 117
              VLFIDE + L
Sbjct: 390 LGGVLFIDEAYAL 402


>gi|282890179|ref|ZP_06298709.1| hypothetical protein pah_c014o031 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499836|gb|EFB42125.1| hypothetical protein pah_c014o031 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 830

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 71/304 (23%), Positives = 122/304 (40%), Gaps = 62/304 (20%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAKAGDLAALLT 101
           +  VGPPG+GKT++ + +AR L   F   S                 + A  G L   L 
Sbjct: 387 ICLVGPPGVGKTSIGKSIARSLNRKFYRFSVGGMRDEAEVKGHRRTYIGAMPGKLIQALK 446

Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLS 152
             +  + V+ +DE+ ++    +        E+L P      LD  +        V+ NLS
Sbjct: 447 FCQTTNPVIMLDEVDKMGSSYQGDPASALLEVLDPEQNCEFLDHYL-------DVRCNLS 499

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED-----LKTIVQRGAKLTGLAVTDEA 207
               I     +  +  PL+DR  I +RL+ Y +++      K ++ R  K  GL  +  +
Sbjct: 500 DILFIVTANVLDTIPEPLKDRMDI-LRLSGYIMQEKIEIAKKYLIPRNRKAMGLKASQVS 558

Query: 208 ACEIAMRS--RGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDL 265
               A+R+   G  R +G     VR      + K I R        +LA+  +  +Q ++
Sbjct: 559 FTNDALRAIINGYARESG-----VRSLEN--NLKKILR--------KLAVKIVREEQAEV 603

Query: 266 RYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI-EPYMIQQGFIQRTPRGRLLMPIAW 324
                 +         +  ISA      D++ + + +P  +   F +RTP G + M +AW
Sbjct: 604 NTKKKKSSKQPTAREKMHRISA------DSLSEYLGKPVFVSDRFYERTPVG-VCMGLAW 656

Query: 325 QHLG 328
             LG
Sbjct: 657 TALG 660


>gi|226496269|ref|NP_001145759.1| hypothetical protein LOC100279266 [Zea mays]
 gi|219884327|gb|ACL52538.1| unknown [Zea mays]
          Length = 476

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 91/234 (38%), Gaps = 36/234 (15%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED---------RD 107
           +L  GPPG GKTTLA  +A E GV F   S P +  +G   A   N+             
Sbjct: 226 LLLHGPPGCGKTTLAHAIANETGVPFYKISAPEVV-SGVSGASEENIRGLFQKAYRTAPS 284

Query: 108 VLFIDEIHRLSIIVEEI-----------LYPAMEDFQLDLMVGEGPS---ARSVKINLSR 153
           ++FIDEI  ++   E +           L   M+ F  +  +G G S   A S +     
Sbjct: 285 IVFIDEIDAIASKRENLQREMERRIVTQLMTCMDQFHQN--IGSGSSNLEAESSEKKPGY 342

Query: 154 FTLIAATTRVGLLTNPLQ--DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEI 211
             +I AT R   +   L+   RF   I L   +    K I+    K+    +  E   ++
Sbjct: 343 VIVIGATNRPDAVDQALRRPGRFDREISLGVPDENARKQIL----KMLTQHLRLEGEFDL 398

Query: 212 AMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDL 265
              +R TP   G  L+ + D A         + I D    R  I++ G  + D 
Sbjct: 399 FKIARATPGFVGADLKALVDKA----GNLAMKRIIDERRARCCIEQDGSSKHDW 448


>gi|111305821|gb|AAI21795.1| Valosin-containing protein [Homo sapiens]
          Length = 806

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 573

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 574 LFFDELDSIA 583



 Score = 37.0 bits (84), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT +A+ VA E G  F   +GP I
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274


>gi|73971214|ref|XP_866075.1| PREDICTED: similar to Transitional endoplasmic reticulum ATPase
           (TER ATPase) (15S Mg(2+)-ATPase p97 subunit)
           (Valosin-containing protein) (VCP) isoform 5 [Canis
           familiaris]
          Length = 759

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 573

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 574 LFFDELDSIA 583



 Score = 37.0 bits (84), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT +A+ VA E G  F   +GP I
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274


>gi|73971222|ref|XP_866137.1| PREDICTED: similar to Transitional endoplasmic reticulum ATPase
           (TER ATPase) (15S Mg(2+)-ATPase p97 subunit)
           (Valosin-containing protein) (VCP) isoform 9 [Canis
           familiaris]
          Length = 787

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 495 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 554

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 555 LFFDELDSIA 564



 Score = 37.0 bits (84), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT +A+ VA E G  F   +GP I
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274


>gi|15805648|ref|NP_294344.1| moxR protein [Deinococcus radiodurans R1]
 gi|6458321|gb|AAF10200.1|AE001920_3 moxR protein [Deinococcus radiodurans R1]
          Length = 320

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 72/161 (44%), Gaps = 28/161 (17%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED---------- 105
           H+L    PG+GKTTLAQ +AR LG+ FR           DL  L  ++ D          
Sbjct: 52  HLLIEDQPGVGKTTLAQALARTLGLGFRRVQFTSDLLPADL--LGVSIWDAASSTFRYQP 109

Query: 106 ----RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATT 161
                ++L  DEI+R +   +  L  AME+ Q    V EG   R +      F +IA   
Sbjct: 110 GPIFSELLLADEINRATPRTQGALLEAMEERQ----VSEGGVTRPLP---DPFFVIATQN 162

Query: 162 RVGLL-TNPLQ----DRFGIPIRLNFYEIEDLKTIVQRGAK 197
               + T+PL     DRF + + L + +    +T+++ G +
Sbjct: 163 PAAFVGTSPLPEAQLDRFLMTVTLGYPDARAERTLLETGGR 203


>gi|156119445|ref|NP_001095217.1| transitional endoplasmic reticulum ATPase [Xenopus laevis]
 gi|64966|emb|CAA38146.1| p97 subunit of 15S Mg(2+)- ATPase [Xenopus laevis]
          Length = 805

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 573

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 574 LFFDELDSIA 583



 Score = 37.0 bits (84), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT +A+ VA E G  F   +GP I
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274


>gi|297816624|ref|XP_002876195.1| hypothetical protein ARALYDRAFT_485698 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322033|gb|EFH52454.1| hypothetical protein ARALYDRAFT_485698 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 810

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 518 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQSAPCV 577

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 578 LFFDELDSIA 587



 Score = 38.1 bits (87), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 245 ILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 304

Query: 109 LFIDEIHRLS 118
           +FIDE+  ++
Sbjct: 305 IFIDELDSIA 314


>gi|296190199|ref|XP_002743098.1| PREDICTED: transitional endoplasmic reticulum ATPase-like
           [Callithrix jacchus]
          Length = 806

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 573

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 574 LFFDELDSIA 583



 Score = 37.0 bits (84), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT +A+ VA E G  F   +GP I
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274


>gi|289426538|ref|ZP_06428281.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes SK187]
 gi|289428633|ref|ZP_06430316.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes J165]
 gi|295131120|ref|YP_003581783.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes SK137]
 gi|289153266|gb|EFD01984.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes SK187]
 gi|289158031|gb|EFD06251.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes J165]
 gi|291376588|gb|ADE00443.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes SK137]
 gi|313763510|gb|EFS34874.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL013PA1]
 gi|313773447|gb|EFS39413.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL074PA1]
 gi|313793900|gb|EFS41924.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL110PA1]
 gi|313801290|gb|EFS42541.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL110PA2]
 gi|313808031|gb|EFS46512.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL087PA2]
 gi|313811500|gb|EFS49214.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL083PA1]
 gi|313816692|gb|EFS54406.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL059PA1]
 gi|313819597|gb|EFS57311.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL046PA2]
 gi|313822078|gb|EFS59792.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL036PA1]
 gi|313823688|gb|EFS61402.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL036PA2]
 gi|313826012|gb|EFS63726.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL063PA1]
 gi|313829480|gb|EFS67194.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL063PA2]
 gi|313834853|gb|EFS72567.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL056PA1]
 gi|313839987|gb|EFS77701.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL086PA1]
 gi|314914810|gb|EFS78641.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL005PA4]
 gi|314920717|gb|EFS84548.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL050PA3]
 gi|314924728|gb|EFS88559.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL036PA3]
 gi|314930597|gb|EFS94428.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL067PA1]
 gi|314954448|gb|EFS98854.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL027PA1]
 gi|314957525|gb|EFT01628.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL002PA1]
 gi|314961992|gb|EFT06093.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL002PA2]
 gi|314963745|gb|EFT07845.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL082PA1]
 gi|314974117|gb|EFT18213.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL053PA1]
 gi|314976593|gb|EFT20688.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL045PA1]
 gi|314978952|gb|EFT23046.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL072PA2]
 gi|314984412|gb|EFT28504.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL005PA1]
 gi|314990962|gb|EFT35053.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL005PA3]
 gi|315079594|gb|EFT51587.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL053PA2]
 gi|315081177|gb|EFT53153.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL078PA1]
 gi|315083640|gb|EFT55616.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL027PA2]
 gi|315087059|gb|EFT59035.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL002PA3]
 gi|315089234|gb|EFT61210.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL072PA1]
 gi|315095256|gb|EFT67232.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL038PA1]
 gi|315099138|gb|EFT71114.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL059PA2]
 gi|315100379|gb|EFT72355.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL046PA1]
 gi|327328481|gb|EGE70243.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL096PA2]
 gi|327329653|gb|EGE71409.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL096PA3]
 gi|327444268|gb|EGE90922.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL043PA2]
 gi|327444852|gb|EGE91506.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL043PA1]
 gi|327446338|gb|EGE92992.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL013PA2]
 gi|327452074|gb|EGE98728.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL092PA1]
 gi|327454889|gb|EGF01544.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL087PA3]
 gi|327457825|gb|EGF04480.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL083PA2]
 gi|328752327|gb|EGF65943.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL020PA1]
 gi|328755277|gb|EGF68893.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL087PA1]
 gi|328758242|gb|EGF71858.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL025PA2]
 gi|328760010|gb|EGF73593.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL099PA1]
 gi|332675997|gb|AEE72813.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Propionibacterium acnes 266]
          Length = 429

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 58/135 (42%), Gaps = 37/135 (27%)

Query: 21  LLRPRTLEEF-----TGQVEACSNLKVFI---------EAAKARAE---------ALDHV 57
           L RPR L EF      GQ EA   L V +         EA   RA             ++
Sbjct: 62  LPRPRELCEFLDAWVIGQEEAKRTLSVAVYNHYKRIQSEANVPRARRAEDDGVELGKSNI 121

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------------- 103
           L +GP G GKT LAQ +AR+L V F       + +AG +   + N+              
Sbjct: 122 LMLGPTGCGKTYLAQTMARQLNVPFAMADATALTEAGYVGEDVENILLKLLQAADFDVKR 181

Query: 104 EDRDVLFIDEIHRLS 118
            +R +++IDEI +++
Sbjct: 182 AERGIVYIDEIDKVA 196


>gi|149045716|gb|EDL98716.1| valosin-containing protein, isoform CRA_a [Rattus norvegicus]
          Length = 686

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 573

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 574 LFFDELDSIA 583



 Score = 37.0 bits (84), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT +A+ VA E G  F   +GP I
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274


>gi|121534154|ref|ZP_01665979.1| Endopeptidase La [Thermosinus carboxydivorans Nor1]
 gi|121307257|gb|EAX48174.1| Endopeptidase La [Thermosinus carboxydivorans Nor1]
          Length = 562

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 98/277 (35%), Gaps = 62/277 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP T  E  GQ E    L+  +     +     HVL  GPPG+GKT  A++V  E   N 
Sbjct: 65  RPSTFAEIVGQEEGLKALRAALCGPNPQ-----HVLIYGPPGVGKTAAARLVLEEAKRNP 119

Query: 83  RSTSGPVIAKAGDLAALLTNLEDR------------------------------------ 106
            S  GP  AK  ++ A     ++R                                    
Sbjct: 120 LSPFGPN-AKFVEMDATTARFDERGIADPLIGTVHDPIYQGAGALGMAGIPQPKPGAVTK 178

Query: 107 ---DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINL------------ 151
               +LFIDEI  L  I    L   +ED ++ L   E     S   N+            
Sbjct: 179 AHGGILFIDEIGELHHIQMNKLLKVLEDRKVFL---ESSYYNSEDTNIPSHIHDIFQNGL 235

Query: 152 -SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACE 210
            + F L+ ATTR+     P      + I       +++  I    AK  G  + D    +
Sbjct: 236 PADFRLVGATTRMAHEIPPAIRSRCVEIFFRPLLPDEISLIAGNAAKKIGFGLED-GVLD 294

Query: 211 IAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           I  R   + R A  +++     A+    KTITR  A+
Sbjct: 295 IVKRYATSGREAVNIIQIAAGIAQNEGNKTITRAHAE 331


>gi|15897671|ref|NP_342276.1| replication factor C large subunit [Sulfolobus solfataricus P2]
 gi|284174996|ref|ZP_06388965.1| replication factor C large subunit [Sulfolobus solfataricus 98/2]
 gi|42559540|sp|Q9UXF6|RFCL_SULSO RecName: Full=Replication factor C large subunit; Short=RFC large
          subunit; AltName: Full=Clamp loader large subunit;
          AltName: Full=SsoRFC large subunit
 gi|6015707|emb|CAB57534.1| replication factor C, large subunit [Sulfolobus solfataricus P2]
 gi|13813942|gb|AAK41066.1| Activator 1, replication factor C (RFC) large subunit (rfcL)
          [Sulfolobus solfataricus P2]
 gi|261602439|gb|ACX92042.1| AAA ATPase central domain protein [Sulfolobus solfataricus 98/2]
          Length = 405

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 33/57 (57%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
          RPR+L++   Q +A   L+ +IE+       +  VL  GPPG+GKT LA+ +A +  
Sbjct: 9  RPRSLKDVENQDDAKKQLQEWIESWLNGNSNVKAVLLHGPPGVGKTVLAEALAHDYN 65


>gi|331010053|gb|EGH90109.1| ATP-dependent protease La [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 805

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 89/215 (41%), Gaps = 53/215 (24%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTS-----------GP----VIAKAGDLAALLT 101
           VL VGPPG+GKT++ + +A  LG  F   S           GP    + A+ G L   L 
Sbjct: 387 VLLVGPPGVGKTSVGRSIAESLGRPFYRLSVGGMRDEAEIKGPRRTYIGAQPGKLVQALK 446

Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAME----DFQLDLMVGEGPSARSVK 148
           ++E  + V+ +DEI ++    +        E L P       D  LDL           +
Sbjct: 447 DVEVMNPVIMLDEIDKMGQSYQGDPASALLETLDPEQNVEFLDHYLDL-----------R 495

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR----------GAKL 198
           ++LS+   +     +  +  PL DR  + IRL+ Y  E+   I +R          G   
Sbjct: 496 LDLSKVLFVCTANTLDSIPGPLLDRMEV-IRLSGYITEEKLAIAKRHLWPKQLEKAGVAK 554

Query: 199 TGLAVTDE---AACEIAMRSRGTPRIAGRLLRRVR 230
           + L+++D    A  E   R  G   +  +L + VR
Sbjct: 555 SKLSISDSALRAVIEGYAREAGVRHLEKQLGKLVR 589


>gi|327288855|ref|XP_003229140.1| PREDICTED: transitional endoplasmic reticulum ATPase-like [Anolis
           carolinensis]
          Length = 807

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 573

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 574 LFFDELDSIA 583



 Score = 37.0 bits (84), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT +A+ VA E G  F   +GP I
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274


>gi|326934708|ref|XP_003213427.1| PREDICTED: transitional endoplasmic reticulum ATPase-like, partial
           [Meleagris gallopavo]
          Length = 674

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 382 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 441

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 442 LFFDELDSIA 451



 Score = 37.0 bits (84), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 127 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 186

Query: 109 LFIDEIHRLS 118
           +FIDE+  ++
Sbjct: 187 IFIDELDAIA 196


>gi|218184617|gb|EEC67044.1| hypothetical protein OsI_33786 [Oryza sativa Indica Group]
          Length = 755

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ +A E   NF S  GP
Sbjct: 520 VLFYGPPGCGKTLLAKAIANECQANFISVKGP 551



 Score = 38.1 bits (87), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 247 ILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 306

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 307 IFIDEIDSIA 316


>gi|167393611|ref|XP_001740649.1| replication factor C subunit [Entamoeba dispar SAW760]
 gi|165895162|gb|EDR22913.1| replication factor C subunit, putative [Entamoeba dispar SAW760]
          Length = 329

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 95/234 (40%), Gaps = 41/234 (17%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +S ++A     RP+TL++  GQ E    LK  +++       L ++LF GPPG GKTT  
Sbjct: 1   MSGQNAWSEKYRPKTLDDVQGQEEVIKLLKSSLDSG------LPNLLFFGPPGSGKTTSI 54

Query: 72  QVVARELGVNFRSTSGPVIAKAGD-----LAALLTNLEDRDVLFIDEIHRLSIIV---EE 123
             VA EL   +       +  +       +   L N   +DV   D I    +I+    +
Sbjct: 55  LAVAHELFQGYFKERVLELNASNQRGIEMVRTTLKNYAMQDVTHYDGIPDYKLIILDESD 114

Query: 124 ILYP--------AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
            L P         MEDF  +                +RF LI     +  +  P+  R  
Sbjct: 115 ALTPDAQTALRRMMEDFTKN----------------TRFCLIC--NYISRILPPISSR-C 155

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           I  R +    E +   +Q   +  G +VT+EA   +++ S G  R    LL+++
Sbjct: 156 IKFRFSALPKEIVSNRLQMICEKEGFSVTNEAIQAVSILSEGDLRYGIGLLQKL 209


>gi|185132242|ref|NP_001117982.1| valosin containing protein [Oncorhynchus mykiss]
 gi|51949893|gb|AAU14869.1| valosin containing protein [Oncorhynchus mykiss]
          Length = 748

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 456 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 515

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 516 LFFDELDSIA 525



 Score = 37.0 bits (84), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 183 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 242

Query: 109 LFIDEIHRLS 118
           +FIDE+  ++
Sbjct: 243 IFIDELDAIA 252


>gi|66934627|gb|AAY58902.1| putative CDC48/ATPase [Hyaloperonospora parasitica]
          Length = 804

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ VA E   NF S  GP +     G+  A +  + D+       V
Sbjct: 509 VLFYGPPGCGKTLLAKAVANECQANFISIKGPELLTMWFGESEANVREVFDKARGAAPCV 568

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 569 LFFDELDSIA 578



 Score = 38.1 bits (87), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           VL  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 236 VLLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNAPAI 295

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 296 IFIDEIDSIA 305


>gi|162605898|ref|XP_001713464.1| cell division cycle protein 48 homolog [Guillardia theta]
 gi|13794396|gb|AAK39773.1|AF083031_130 cell division cycle protein 48 homolog [Guillardia theta]
          Length = 752

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ +A E   NF S  GP
Sbjct: 493 VLFYGPPGCGKTLLAKAIANECQANFISIKGP 524



 Score = 39.7 bits (91), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           VL  GP G GKT +A+ VA E G    S +GP I    AG+  + L    D        +
Sbjct: 220 VLMYGPSGCGKTLIAKAVANETGAFLYSINGPEIMSKLAGESESNLKKAFDEAEKNSPSI 279

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 280 IFIDEIDSIA 289


>gi|28848618|gb|AAO13093.1| Rad17 [Xenopus laevis]
          Length = 674

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 12/106 (11%)

Query: 11  NVSQEDADISLLRPRTLEEFT------GQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           + SQ D  I   RP    E         +VEAC  LK  +E  + + +    +L  GPPG
Sbjct: 79  DYSQNDPWIDKYRPEIQAELAVHKKKIEEVEAC--LKTHVEK-RPQKQGGQILLLTGPPG 135

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLF 110
            GKT   QV+ +E+G+  +    P++    +    L  + DRD  F
Sbjct: 136 CGKTATIQVLTKEMGIQVQEWINPLMQ---EFKQDLPEVFDRDTRF 178


>gi|63054529|ref|NP_593287.2| AAA family ATPase Cdc48 [Schizosaccharomyces pombe 972h-]
 gi|27151477|sp|Q9P3A7|CDC48_SCHPO RecName: Full=Cell division cycle protein 48
 gi|159883922|emb|CAB99275.2| AAA family ATPase Cdc48 [Schizosaccharomyces pombe]
          Length = 815

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ +A E   NF S  GP
Sbjct: 534 VLFFGPPGTGKTLLAKAIANECSANFISVKGP 565



 Score = 38.1 bits (87), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 261 ILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 320

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 321 IFIDEIDSIA 330


>gi|326527541|dbj|BAK08045.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 813

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 522 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARGSAPCV 581

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 582 LFFDELDSIA 591



 Score = 37.7 bits (86), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 249 ILLFGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 308

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 309 IFIDEIDSIA 318


>gi|312082008|ref|XP_003143266.1| ATPase [Loa loa]
 gi|307761567|gb|EFO20801.1| ATPase [Loa loa]
          Length = 714

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT LA+ VA E G+NF S  GP
Sbjct: 477 ILLCGPPGCGKTLLAKAVANESGMNFISIKGP 508


>gi|298229917|ref|ZP_06963598.1| recombination factor protein RarA [Streptococcus pneumoniae str.
           Canada MDR_19F]
          Length = 390

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 10/94 (10%)

Query: 51  AEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA-----GDLAALLTNLED 105
           A  L  ++  GPPG+GKT++A  +A      FR+ +  V +K       + A     L  
Sbjct: 3   ANRLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRLQEISEEAKFSGGL-- 60

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
             VL +DEIHRL    ++ L P +E   L +M+G
Sbjct: 61  --VLLLDEIHRLDKTKQDFLLPLLES-GLVIMIG 91


>gi|220903968|ref|YP_002479280.1| ATP-dependent protease La [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219868267|gb|ACL48602.1| ATP-dependent protease La [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 813

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 100/242 (41%), Gaps = 60/242 (24%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           + FVGPPG+GKT+LA+ VA+  G +F R + G V  +A              G +   L 
Sbjct: 356 LCFVGPPGVGKTSLARSVAKATGRDFVRLSLGGVRDEAEIRGHRRTYVGALPGKIIQSLK 415

Query: 102 NLEDRDVLF-IDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLS 152
            ++  + LF +DE+ +++            E+L P      +D  +        ++ +LS
Sbjct: 416 RVKYNNPLFCLDEVDKMTSDYRGDPASALLEVLDPEQNHTFMDHYL-------DLEYDLS 468

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFY-EIEDL---------KTIVQRGAKLTGLA 202
           +   I     +  +  PL DR  I I LN Y E E           + I + G K + + 
Sbjct: 469 KIFFITTANSLHTIPVPLLDRMEI-IELNSYLETEKRHIARHFLLPRQIEEHGLKESNIR 527

Query: 203 VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQ 262
           V+D A  EI                 +R +   A  + + REIA A   + AI  +  + 
Sbjct: 528 VSDNAVLEI-----------------IRSYTREAGVRNLEREIA-ALCRKTAIKLVEEEN 569

Query: 263 LD 264
           LD
Sbjct: 570 LD 571


>gi|189065396|dbj|BAG35235.1| unnamed protein product [Homo sapiens]
          Length = 806

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 573

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 574 LFFDELDSIA 583



 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 8/75 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 300

Query: 109 LFIDEIHRLSIIVEE 123
           +FIDE+  ++ I E+
Sbjct: 301 IFIDELDAIAPIREK 315


>gi|145340922|ref|XP_001415566.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144575789|gb|ABO93858.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 804

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 518 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQSAPCV 577

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 578 LFFDELDSIA 587



 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 245 ILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 304

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 305 IFIDEIDSIA 314


>gi|26390141|dbj|BAC25849.1| unnamed protein product [Mus musculus]
          Length = 806

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 573

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 574 LFFDELDSIA 583



 Score = 37.0 bits (84), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT +A+ VA E G  F   +GP I
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274


>gi|41393119|ref|NP_958889.1| transitional endoplasmic reticulum ATPase [Danio rerio]
 gi|82188427|sp|Q7ZU99|TERA_DANRE RecName: Full=Transitional endoplasmic reticulum ATPase; Short=TER
           ATPase; AltName: Full=Protein CDC48; AltName:
           Full=Valosin-containing protein; Short=VCP
 gi|29791670|gb|AAH50488.1| Valosin containing protein [Danio rerio]
 gi|45501133|gb|AAH67384.1| Valosin containing protein [Danio rerio]
 gi|46403223|gb|AAS92631.1| valosin-containing protein [Danio rerio]
 gi|122891315|emb|CAM13143.1| valosin containing protein [Danio rerio]
          Length = 806

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 573

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 574 LFFDELDSIA 583



 Score = 37.0 bits (84), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT +A+ VA E G  F   +GP I
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274


>gi|34740143|dbj|BAC87740.1| CDC48 [Danio rerio]
          Length = 806

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 573

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 574 LFFDELDSIA 583



 Score = 37.0 bits (84), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT +A+ VA E G  F   +GP I
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274


>gi|47523626|ref|NP_999445.1| transitional endoplasmic reticulum ATPase [Sus scrofa]
 gi|1174636|sp|P03974|TERA_PIG RecName: Full=Transitional endoplasmic reticulum ATPase; Short=TER
           ATPase; AltName: Full=15S Mg(2+)-ATPase p97 subunit;
           AltName: Full=Valosin-containing protein; Short=VCP
 gi|164726|gb|AAA31142.1| valosin-containing protein [Sus scrofa]
          Length = 806

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 573

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 574 LFFDELDSIA 583



 Score = 37.0 bits (84), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT +A+ VA E G  F   +GP I
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274


>gi|71755451|ref|XP_828640.1| replication factor C subunit 1 [Trypanosoma brucei TREU927]
 gi|70834026|gb|EAN79528.1| replication factor C, subunit 1, putative [Trypanosoma brucei]
 gi|261334525|emb|CBH17519.1| replication factor C large subunit, putative [Trypanosoma brucei
          gambiense DAL972]
          Length = 587

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +P+T+ +    V A + LK ++E  +A +  +   L  GPPG+GKTT   VVA ELG
Sbjct: 19 YKPKTIAQMCYPVTA-NKLKQWMEEFEANSSKMRGALLSGPPGVGKTTSVYVVASELG 75


>gi|323455979|gb|EGB11846.1| hypothetical protein AURANDRAFT_69630 [Aureococcus anophagefferens]
          Length = 801

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT +A+ VA E   NF S  GP
Sbjct: 509 VLFYGPPGCGKTLMAKAVANECQANFISVKGP 540



 Score = 38.1 bits (87), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           VL  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 236 VLLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 295

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 296 IFIDEIDSIA 305


>gi|313831241|gb|EFS68955.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL007PA1]
          Length = 429

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 58/135 (42%), Gaps = 37/135 (27%)

Query: 21  LLRPRTLEEF-----TGQVEACSNLKVFI---------EAAKARAE---------ALDHV 57
           L RPR L EF      GQ EA   L V +         EA   RA             ++
Sbjct: 62  LPRPRELCEFLDAWVIGQEEAKRTLSVAVYNHYKRIQSEANVPRARRAEDDGVELGKSNI 121

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------------- 103
           L +GP G GKT LAQ +AR+L V F       + +AG +   + N+              
Sbjct: 122 LMLGPTGCGKTYLAQTMARQLNVPFAMADATALTEAGYVGEDVENILLKLLQAADFDVKR 181

Query: 104 EDRDVLFIDEIHRLS 118
            +R +++IDEI +++
Sbjct: 182 AERGIVYIDEIDKVA 196


>gi|296111510|ref|YP_003621892.1| DNA-directed DNA polymerase III, gamma/tau subunit [Leuconostoc
           kimchii IMSNU 11154]
 gi|295833042|gb|ADG40923.1| DNA-directed DNA polymerase III, gamma/tau subunit [Leuconostoc
           kimchii IMSNU 11154]
          Length = 594

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 52/118 (44%), Gaps = 27/118 (22%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG- 79
           + RPRT ++  GQ      LK  IE  +         LF GP G GKT+ A++ ARE+  
Sbjct: 9   VYRPRTFDDMVGQDVITQTLKNAIETHQTGHA----YLFSGPRGTGKTSAAKIFAREING 64

Query: 80  -------------VNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLS 118
                        V F + S    ++  D+  +L N++      +  V  IDE+H LS
Sbjct: 65  IAPETSDAQIPDIVEFDAASN---SRVEDMRDILANVDYAPIESEYKVYIIDEVHMLS 119


>gi|260591351|ref|ZP_05856809.1| ATP-dependent metalloprotease FtsH [Prevotella veroralis F0319]
 gi|260536717|gb|EEX19334.1| ATP-dependent metalloprotease FtsH [Prevotella veroralis F0319]
          Length = 678

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 68/264 (25%), Positives = 109/264 (41%), Gaps = 51/264 (19%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ  A   ++  +E  K   +  D         L +GPPG GKT LA+ VA E 
Sbjct: 182 TFKDVAGQTGAKQEVQEIVEFLKNPKKYTDLGGKIPKGALLIGPPGTGKTLLAKAVAGEA 241

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG       V   A  +  +    +++   ++FIDEI  +     +   PAM 
Sbjct: 242 GVPFFSMSGSDFVEMFVGVGASRVRDVFHQAKEKSPCIIFIDEIDAVGRARSK--NPAM- 298

Query: 131 DFQLDLMVGEGPSARSVKINL-----------SRFTLIAATTRVGLLTNPL--QDRFGIP 177
                     G   R   +N            S   ++AAT RV +L   L    RF   
Sbjct: 299 ---------GGNDERENTLNALLTEMDGFGTNSGVIVLAATNRVDMLDKALLRAGRFDRQ 349

Query: 178 IRLNFYEIEDLKTIV---QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
           I ++  ++ + K I     R  KL       +   +I + +R TP  +G  +  V + A 
Sbjct: 350 IHVDLPDLPERKDIFLVHMRNLKL-------DKNLDIDLLARQTPGFSGADIANVCNEAA 402

Query: 235 VAHAKTITREIADAALLRLAIDKM 258
           +  A+  ++E+A    L  A+D++
Sbjct: 403 LIAARHDSKEVAKQDFLD-AVDRI 425


>gi|154482728|ref|ZP_02025176.1| hypothetical protein EUBVEN_00405 [Eubacterium ventriosum ATCC
           27560]
 gi|149736323|gb|EDM52209.1| hypothetical protein EUBVEN_00405 [Eubacterium ventriosum ATCC
           27560]
          Length = 426

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 67/137 (48%), Gaps = 30/137 (21%)

Query: 10  RNVSQEDADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEA---LD------ 55
            NV++E+  I+LL+P+ ++EF      GQ  A   L V +     R  A   LD      
Sbjct: 54  NNVAEEE--INLLKPKEIKEFLDQYVIGQDAAKKVLSVAVYNHYKRVLAGKDLDVELQKS 111

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---EDRD- 107
           ++L +GP G GKT LAQ +A+ L V F       + +AG    D+  +L  L    D D 
Sbjct: 112 NILLLGPTGSGKTYLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLIQAADYDI 171

Query: 108 ------VLFIDEIHRLS 118
                 +++IDEI +++
Sbjct: 172 ERAQHGIIYIDEIDKIT 188


>gi|73971228|ref|XP_538712.2| PREDICTED: similar to Transitional endoplasmic reticulum ATPase
           (TER ATPase) (15S Mg(2+)-ATPase p97 subunit)
           (Valosin-containing protein) (VCP) isoform 1 [Canis
           familiaris]
          Length = 812

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 573

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 574 LFFDELDSIA 583



 Score = 37.0 bits (84), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT +A+ VA E G  F   +GP I
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274


>gi|21619335|gb|AAH31847.1| Nuclear VCP-like [Mus musculus]
          Length = 855

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT LA+ VA E G+NF S  GP
Sbjct: 617 ILLAGPPGCGKTLLAKAVANESGLNFISVKGP 648



 Score = 36.6 bits (83), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRDV------ 108
           VL  GPPG GKT LA  +A EL +     + P I    +G+    L  L D+ V      
Sbjct: 300 VLLHGPPGCGKTLLAHAIAGELDLPILKVAAPEIVSGVSGESEQKLRELFDQAVSNAPCI 359

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 360 VFIDEIDAIT 369


>gi|74139564|dbj|BAE40919.1| unnamed protein product [Mus musculus]
          Length = 806

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 573

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 574 LFFDELDSIA 583



 Score = 37.0 bits (84), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT +A+ VA E G  F   +GP I
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274


>gi|6005942|ref|NP_009057.1| transitional endoplasmic reticulum ATPase [Homo sapiens]
 gi|225543319|ref|NP_033529.3| transitional endoplasmic reticulum ATPase [Mus musculus]
 gi|291383033|ref|XP_002708056.1| PREDICTED: valosin-containing protein [Oryctolagus cuniculus]
 gi|297684123|ref|XP_002819702.1| PREDICTED: transitional endoplasmic reticulum ATPase-like [Pongo
           abelii]
 gi|332831823|ref|XP_003312111.1| PREDICTED: transitional endoplasmic reticulum ATPase [Pan
           troglodytes]
 gi|6094447|sp|P55072|TERA_HUMAN RecName: Full=Transitional endoplasmic reticulum ATPase; Short=TER
           ATPase; AltName: Full=15S Mg(2+)-ATPase p97 subunit;
           AltName: Full=Valosin-containing protein; Short=VCP
 gi|146291078|sp|Q01853|TERA_MOUSE RecName: Full=Transitional endoplasmic reticulum ATPase; Short=TER
           ATPase; AltName: Full=15S Mg(2+)-ATPase p97 subunit;
           AltName: Full=Valosin-containing protein; Short=VCP
 gi|185177986|pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
 gi|185177987|pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
 gi|185177988|pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
 gi|185177989|pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
 gi|185177990|pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
 gi|185177991|pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
 gi|185177992|pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
 gi|185177993|pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
 gi|185177994|pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
 gi|185177995|pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
 gi|2984586|gb|AAC07984.1| TERA_HUMAN [Homo sapiens]
 gi|5410290|gb|AAD43016.1| transitional endoplasmic reticulum ATPase [Homo sapiens]
 gi|29144873|gb|AAH43053.1| Valosin containing protein [Mus musculus]
 gi|29144989|gb|AAH49114.1| Valosin containing protein [Mus musculus]
 gi|55662798|emb|CAH70993.1| valosin-containing protein [Homo sapiens]
 gi|74140012|dbj|BAE31840.1| unnamed protein product [Mus musculus]
 gi|74185284|dbj|BAE30119.1| unnamed protein product [Mus musculus]
 gi|74191623|dbj|BAE30383.1| unnamed protein product [Mus musculus]
 gi|74197192|dbj|BAE35141.1| unnamed protein product [Mus musculus]
 gi|74211628|dbj|BAE29175.1| unnamed protein product [Mus musculus]
 gi|83405636|gb|AAI10914.1| Valosin-containing protein [Homo sapiens]
 gi|119578808|gb|EAW58404.1| valosin-containing protein, isoform CRA_b [Homo sapiens]
 gi|122889766|emb|CAM14316.1| valosin containing protein [Mus musculus]
 gi|168278060|dbj|BAG11008.1| transitional endoplasmic reticulum ATPase [synthetic construct]
          Length = 806

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 573

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 574 LFFDELDSIA 583



 Score = 37.0 bits (84), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT +A+ VA E G  F   +GP I
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274


>gi|73971210|ref|XP_852626.1| PREDICTED: similar to valosin-containing protein isoform 3 [Canis
           familiaris]
 gi|301787635|ref|XP_002929233.1| PREDICTED: transitional endoplasmic reticulum ATPase-like
           [Ailuropoda melanoleuca]
 gi|296484691|gb|DAA26806.1| transitional endoplasmic reticulum ATPase [Bos taurus]
 gi|225450|prf||1303334A valosin precursor
          Length = 806

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 573

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 574 LFFDELDSIA 583



 Score = 37.0 bits (84), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT +A+ VA E G  F   +GP I
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274


>gi|33468981|ref|NP_080447.1| nuclear valosin-containing protein-like [Mus musculus]
 gi|32699478|sp|Q9DBY8|NVL_MOUSE RecName: Full=Nuclear valosin-containing protein-like; Short=NVLp;
           Short=Nuclear VCP-like protein
 gi|12836020|dbj|BAB23464.1| unnamed protein product [Mus musculus]
 gi|74150277|dbj|BAE24409.1| unnamed protein product [Mus musculus]
 gi|148681184|gb|EDL13131.1| nuclear VCP-like [Mus musculus]
          Length = 855

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT LA+ VA E G+NF S  GP
Sbjct: 617 ILLAGPPGCGKTLLAKAVANESGLNFISVKGP 648



 Score = 37.0 bits (84), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRDV------ 108
           VL  GPPG GKT LA  +A EL +     + P I    +G+    L  L D+ V      
Sbjct: 300 VLLHGPPGCGKTLLAHAIAGELDLPILKVAAPEIVSGVSGESEQKLRELFDQAVSNAPCI 359

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 360 VFIDEIDAIT 369


>gi|71005554|ref|XP_757443.1| hypothetical protein UM01296.1 [Ustilago maydis 521]
 gi|46096926|gb|EAK82159.1| hypothetical protein UM01296.1 [Ustilago maydis 521]
          Length = 878

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDRD------V 108
           VL  GPPG GKT LA  VA ELGV F S S P  V   +G+    + +  D        +
Sbjct: 188 VLLHGPPGCGKTMLAGAVAGELGVPFLSISAPSVVSGTSGESEKTIRDTFDEAASIAPCI 247

Query: 109 LFIDEIHRLS 118
           LFIDEI  ++
Sbjct: 248 LFIDEIDAIT 257



 Score = 39.7 bits (91), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 597 VLLWGPPGCGKTLLAKAVANESRANFISVKGP 628


>gi|237756437|ref|ZP_04584976.1| ATP-dependent protease La [Sulfurihydrogenibium yellowstonense
           SS-5]
 gi|237691402|gb|EEP60471.1| ATP-dependent protease La [Sulfurihydrogenibium yellowstonense
           SS-5]
          Length = 770

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 97/224 (43%), Gaps = 45/224 (20%)

Query: 34  VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAK 92
           +E  + LK+  E++K ++     + FVGPPG+GKT+L + +A+ L   F R + G V  +
Sbjct: 313 LEYLAVLKLKKESSKDKSIKGPILCFVGPPGVGKTSLGRSIAKALNRKFVRISLGGVRDE 372

Query: 93  A--------------GDLAALLTNLEDRD-VLFIDEIHRLSIIVE--------EILYPAM 129
           A              G +   +     ++ V+ +DE+ ++ +           E+L P  
Sbjct: 373 AEIRGHRRTYVGAMPGKIIQAIKQAGTKNPVIMLDEVDKIGLDFRGDPTAALLEVLDPEQ 432

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED-- 187
               +D  +G       V  +LS    I    R+  +  PL DR  + IRL+ Y  E+  
Sbjct: 433 NKEFVDHYLG-------VPFDLSEVMFICTANRLDTIPRPLLDRMEV-IRLSGYSEEEKL 484

Query: 188 ---LKTIVQRGAKLTGLAVTDEAACEIAMRS-----RGTPRIAG 223
               K ++ +  K  GL   DE   E + ++     RG  R AG
Sbjct: 485 HIAKKYLIPKQLKENGL---DEKTVEFSDKAITFLIRGYTREAG 525


>gi|221108162|ref|XP_002156452.1| PREDICTED: similar to predicted protein, partial [Hydra
           magnipapillata]
          Length = 412

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT LA+ +A E G+NF S  GP
Sbjct: 109 ILLAGPPGCGKTLLAKAIANEAGINFISVKGP 140


>gi|170087590|ref|XP_001875018.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164650218|gb|EDR14459.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 817

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 518 VLFYGPPGTGKTLLAKAIANECNANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCV 577

Query: 109 LFIDEIHRLS 118
           +F DE+  ++
Sbjct: 578 MFFDELDSIA 587



 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 245 ILMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 304

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 305 IFIDEIDSIA 314


>gi|148700414|gb|EDL32361.1| Werner helicase interacting protein 1, isoform CRA_d [Mus musculus]
          Length = 339

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 54/105 (51%), Gaps = 19/105 (18%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75
           +RP TL+++ GQ  A      L+  +EA +     +  ++  GPPG GKTTLA ++A   
Sbjct: 226 MRPDTLQDYIGQSRAVGQETLLRSLLEANE-----IPSLILWGPPGCGKTTLAHIIANNS 280

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDE 113
           ++  + F + S    AK  D+  ++   ++       + +LFIDE
Sbjct: 281 KKHSIRFVTLSA-TNAKTNDVRDVIKQAQNEKSFFKRKTILFIDE 324


>gi|146448775|gb|ABQ41382.1| cell division cycle 48 [Paralichthys olivaceus]
          Length = 806

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 573

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 574 LFFDELDSIA 583


>gi|90093334|ref|NP_001035017.1| transitional endoplasmic reticulum ATPase-like [Danio rerio]
 gi|89130628|gb|AAI14307.1| Zgc:136908 [Danio rerio]
 gi|220672874|emb|CAX14485.1| novel protein similar to vertebrate valosin-containing protein
           (VCP, zgc:136908) [Danio rerio]
          Length = 805

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ +A E   NF S  GP
Sbjct: 516 VLFYGPPGCGKTLLAKAIANECQANFVSIKGP 547



 Score = 36.6 bits (83), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT +A+ VA E G  F   +GP I
Sbjct: 243 ILLYGPPGTGKTLVARAVANETGAFFFLINGPEI 276


>gi|77735541|ref|NP_001029466.1| transitional endoplasmic reticulum ATPase [Bos taurus]
 gi|122140828|sp|Q3ZBT1|TERA_BOVIN RecName: Full=Transitional endoplasmic reticulum ATPase; Short=TER
           ATPase; AltName: Full=15S Mg(2+)-ATPase p97 subunit;
           AltName: Full=Valosin-containing protein; Short=VCP
 gi|73586667|gb|AAI03126.1| Valosin-containing protein [Bos taurus]
          Length = 806

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 573

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 574 LFFDELDSIA 583



 Score = 37.0 bits (84), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT +A+ VA E G  F   +GP I
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274


>gi|74192715|dbj|BAE34876.1| unnamed protein product [Mus musculus]
          Length = 806

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 573

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 574 LFFDELDSIA 583



 Score = 37.0 bits (84), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT +A+ VA E G  F   +GP I
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274


>gi|40889614|pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
          Length = 816

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 573

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 574 LFFDELDSIA 583



 Score = 37.0 bits (84), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT +A+ VA E G  F   +GP I
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274


>gi|17865351|ref|NP_446316.1| transitional endoplasmic reticulum ATPase [Rattus norvegicus]
 gi|1174637|sp|P46462|TERA_RAT RecName: Full=Transitional endoplasmic reticulum ATPase; Short=TER
           ATPase; AltName: Full=15S Mg(2+)-ATPase p97 subunit;
           AltName: Full=Valosin-containing protein; Short=VCP
 gi|641973|gb|AAC52154.1| transitional endoplasmic reticulum ATPase [Rattus norvegicus]
 gi|38014694|gb|AAH60518.1| Valosin-containing protein [Rattus norvegicus]
 gi|149045717|gb|EDL98717.1| valosin-containing protein, isoform CRA_b [Rattus norvegicus]
 gi|1093322|prf||2103265A transitional endoplasmic reticulum ATPase
          Length = 806

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 573

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 574 LFFDELDSIA 583



 Score = 37.0 bits (84), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT +A+ VA E G  F   +GP I
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274


>gi|55217|emb|CAA78412.1| murine valosin-containing protein [Mus musculus]
          Length = 806

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 573

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 574 LFFDELDSIA 583



 Score = 37.0 bits (84), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT +A+ VA E G  F   +GP I
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274


>gi|26344299|dbj|BAC35806.1| unnamed protein product [Mus musculus]
          Length = 698

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT LA+ VA E G+NF S  GP
Sbjct: 460 ILLAGPPGCGKTLLAKAVANESGLNFISVKGP 491



 Score = 37.0 bits (84), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRDV------ 108
           VL  GPPG GKT LA  +A EL +     + P I    +G+    L  L D+ V      
Sbjct: 143 VLLHGPPGCGKTLLAHAIAGELDLPILKVAAPEIVSGVSGESEQKLRELFDQAVSNAPCI 202

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 203 VFIDEIDAIT 212


>gi|253681306|ref|ZP_04862104.1| ATP-dependent protease, Lon family [Clostridium botulinum D str.
           1873]
 gi|253562544|gb|EES91995.1| ATP-dependent protease, Lon family [Clostridium botulinum D str.
           1873]
          Length = 635

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 81/211 (38%), Gaps = 60/211 (28%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           LS N+      +S+LRP++  E  GQ  A  +L      +K  +    H++  GPPG+GK
Sbjct: 161 LSNNI------LSMLRPKSFSEIVGQERAIKSL-----VSKLASPYPQHIILYGPPGVGK 209

Query: 68  TTLAQVVAREL------------------GVNFR------------STSGPVIAKAG-DL 96
           TT A++   E+                  G   R            S   P+   +  DL
Sbjct: 210 TTAARLALEEVKKINHTPFDEDGKFVEVDGTTLRWDPREITNPLLGSVHDPIYQGSKRDL 269

Query: 97  AAL--------LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG-EGPSARSV 147
           A +        L       VLFIDEI  L  I++  L   +ED +++       P   ++
Sbjct: 270 AEIGVPEPKPGLVTEAHGGVLFIDEIGELDDILQNKLLKVLEDKRVEFSSSYYDPDDENI 329

Query: 148 KINL---------SRFTLIAATTRVGLLTNP 169
              +         + F LI ATTR     NP
Sbjct: 330 PKYIKYLFENGAPADFVLIGATTREPKDINP 360


>gi|242091720|ref|XP_002436350.1| hypothetical protein SORBIDRAFT_10g000870 [Sorghum bicolor]
 gi|241914573|gb|EER87717.1| hypothetical protein SORBIDRAFT_10g000870 [Sorghum bicolor]
          Length = 775

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 53/127 (41%), Gaps = 22/127 (17%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED---------RD 107
           +L  GPPG GKTTLA  +A E GV F   S P +  +G   A   N+             
Sbjct: 233 LLLHGPPGCGKTTLAHAIANETGVPFYKISAPEVV-SGVSGASEENIRGLFQKAYRTAPS 291

Query: 108 VLFIDEIHRLSIIVEEI-----------LYPAMEDFQLDLMVGEGP-SARSVKINLSRFT 155
           ++FIDEI  ++   E +           L   M+ F  ++  G G   A S +       
Sbjct: 292 IVFIDEIDAIASKRENLQREMERRIVTQLMTCMDQFHQNIGSGSGNLDAESSEKKPGYVI 351

Query: 156 LIAATTR 162
           +I AT R
Sbjct: 352 VIGATNR 358



 Score = 39.7 bits (91), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 19/31 (61%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           L  GPPG GKT +A+ VA E G NF    GP
Sbjct: 538 LLFGPPGCGKTLIAKAVAHEAGANFIHIKGP 568


>gi|213406794|ref|XP_002174168.1| peroxisomal biogenesis factor 6 [Schizosaccharomyces japonicus
           yFS275]
 gi|212002215|gb|EEB07875.1| peroxisomal biogenesis factor 6 [Schizosaccharomyces japonicus
           yFS275]
          Length = 941

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT LA+ VA EL +NF S  GP
Sbjct: 676 ILLYGPPGTGKTLLAKAVASELSLNFLSIKGP 707


>gi|113206112|ref|NP_001038129.1| transitional endoplasmic reticulum ATPase [Gallus gallus]
 gi|53126280|emb|CAG30944.1| hypothetical protein RCJMB04_1c3 [Gallus gallus]
 gi|90990971|dbj|BAE92937.1| valosin containing protein [Gallus gallus]
          Length = 806

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 573

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 574 LFFDELDSIA 583



 Score = 37.0 bits (84), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT +A+ VA E G  F   +GP I
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274


>gi|73971230|ref|XP_866191.1| PREDICTED: similar to Transitional endoplasmic reticulum ATPase
           (TER ATPase) (15S Mg(2+)-ATPase p97 subunit)
           (Valosin-containing protein) (VCP) isoform 12 [Canis
           familiaris]
          Length = 819

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 573

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 574 LFFDELDSIA 583



 Score = 37.0 bits (84), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT +A+ VA E G  F   +GP I
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274


>gi|325181066|emb|CCA15478.1| replication factor C subunit 4 putative [Albugo laibachii Nc14]
          Length = 333

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 6/68 (8%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          I   RP+ + + + Q    + L+  I + +     L H+LF GPPG GKT+    VAREL
Sbjct: 13 IEKYRPKVINDISHQEHVVATLRQSIASGQ-----LPHLLFYGPPGTGKTSTIVAVAREL 67

Query: 79 -GVNFRST 85
           G +FR  
Sbjct: 68 YGNDFRKN 75


>gi|315108936|gb|EFT80912.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL030PA2]
          Length = 429

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 58/135 (42%), Gaps = 37/135 (27%)

Query: 21  LLRPRTLEEF-----TGQVEACSNLKVFI---------EAAKARAE---------ALDHV 57
           L RPR L EF      GQ EA   L V +         EA   RA             ++
Sbjct: 62  LPRPRELCEFLDAWVIGQEEAKRTLSVAVYNHYKRIQSEANVPRARRAEDDGVELGKSNI 121

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------------- 103
           L +GP G GKT LAQ +AR+L V F       + +AG +   + N+              
Sbjct: 122 LMLGPTGCGKTYLAQTMARQLNVPFAMADATALTEAGYVGEDVENILLKLLQAADFDVKR 181

Query: 104 EDRDVLFIDEIHRLS 118
            +R +++IDEI +++
Sbjct: 182 AERGIVYIDEIDKVA 196


>gi|313682964|ref|YP_004060702.1| ATP-dependent clp protease ATP-binding subunit clpx [Sulfuricurvum
           kujiense DSM 16994]
 gi|313155824|gb|ADR34502.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Sulfuricurvum
           kujiense DSM 16994]
          Length = 410

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 66/150 (44%), Gaps = 32/150 (21%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQ-------------VEACSNLKVFIEAAKA 49
           D EG  +  V  ++A+  LL P+ L  F GQ             V   ++ K   +    
Sbjct: 42  DSEGEGTAAVEHKNAE--LLTPKELNTFLGQYIIGQDRARKLLSVAVYNHYKRIFKHTVV 99

Query: 50  RAE---ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTN 102
             E   A  +VL +GP G GKT +AQ +AR L V         + +AG    D+  +LT 
Sbjct: 100 EDETEIAKSNVLLIGPTGSGKTLMAQTIARVLNVPIAIADATSLTEAGYVGEDVENILTK 159

Query: 103 L---EDRDV-------LFIDEIHRLSIIVE 122
           L    D DV       +FIDEI ++S + E
Sbjct: 160 LLQAADGDVERAQQGIVFIDEIDKISRMSE 189


>gi|291276286|ref|YP_003516058.1| ATP-dependent clp protease ATP-binding subunit ClpX [Helicobacter
           mustelae 12198]
 gi|290963480|emb|CBG39310.1| ATP-dependent clp protease ATP-binding subunit clpX [Helicobacter
           mustelae 12198]
          Length = 425

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 14/84 (16%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL----- 103
           A  ++LF+GP G GKT +AQ +A+ L V         + +AG    D+  +LT L     
Sbjct: 116 AKSNILFIGPTGSGKTLMAQTIAKALNVPIAICDATSLTEAGYVGEDVENILTRLLQAAD 175

Query: 104 -----EDRDVLFIDEIHRLSIIVE 122
                  R ++FIDEI ++S + E
Sbjct: 176 GDVARAQRGIVFIDEIDKISRLSE 199


>gi|223993867|ref|XP_002286617.1| hypothetical protein THAPSDRAFT_267952 [Thalassiosira pseudonana
           CCMP1335]
 gi|220977932|gb|EED96258.1| hypothetical protein THAPSDRAFT_267952 [Thalassiosira pseudonana
           CCMP1335]
          Length = 811

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT +A+ VA E   NF S  GP
Sbjct: 512 VLFYGPPGCGKTLMAKAVANECQANFISVKGP 543



 Score = 38.5 bits (88), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           VL  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 239 VLLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNAPAI 298

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 299 IFIDEIDSIA 308


>gi|156093657|ref|XP_001612867.1| replication factor C subunit 2 [Plasmodium vivax SaI-1]
 gi|148801741|gb|EDL43140.1| replication factor C subunit 2, putative [Plasmodium vivax]
          Length = 330

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 96/228 (42%), Gaps = 46/228 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+ L++   Q  A S LK  +     R + + H++F GPPG GKT+    +A EL    
Sbjct: 11  RPKKLDDIVHQTNAVSMLKEVV-----RTKNMPHLIFHGPPGTGKTSAINALAHELFGRD 65

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDE----IHRLSIIVEEILYPAMEDF------ 132
             +   +   A D         DR +  + E      R+SI   +I     E        
Sbjct: 66  NISERVLELNASD---------DRGINVVREKIKAYTRISISKNKINSETNETLPPWKLV 116

Query: 133 ---QLDLMVGEGPSA--RSVKI--NLSRFTLIAATTRVGLLTNPLQDRF------GIPIR 179
              + D+M  +  SA  R ++I  N++RF LI     +  +++P+  R       GIPI 
Sbjct: 117 VLDEADMMTEDAQSALRRIIEIYSNVTRFILIC--NYIHKISDPIYSRCSCYRFQGIPIN 174

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
           +        K  +    K  G+ + D+A  +I   ++G  R A  +L+
Sbjct: 175 IK-------KDKLLYICKSEGINILDDALDKIIETTQGDLRRAVSILQ 215


>gi|118575717|ref|YP_875460.1| AAA ATPase [Cenarchaeum symbiosum A]
 gi|118194238|gb|ABK77156.1| AAA ATPase [Cenarchaeum symbiosum A]
          Length = 724

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 8/80 (10%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL--EDRD 107
           E+   +L  GPPG GKT +A+V+A E   N  S +GP I     G+  A L ++  E +D
Sbjct: 212 ESHSGILLYGPPGCGKTLIAKVLASESEANMYSINGPEIMNKYYGETEARLRDIFKEAKD 271

Query: 108 ----VLFIDEIHRLSIIVEE 123
               ++FIDEI  ++   EE
Sbjct: 272 NSPSIIFIDEIDAIAPKREE 291


>gi|73971232|ref|XP_866203.1| PREDICTED: similar to Transitional endoplasmic reticulum ATPase
           (TER ATPase) (15S Mg(2+)-ATPase p97 subunit)
           (Valosin-containing protein) (VCP) isoform 13 [Canis
           familiaris]
          Length = 810

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 573

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 574 LFFDELDSIA 583



 Score = 37.0 bits (84), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT +A+ VA E G  F   +GP I
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274


>gi|50843045|ref|YP_056272.1| ATP-dependent protease ATP-binding subunit [Propionibacterium acnes
           KPA171202]
 gi|282854722|ref|ZP_06264057.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes J139]
 gi|61211462|sp|Q6A7F1|CLPX_PROAC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|50840647|gb|AAT83314.1| ATP dependent Clp protease ATP binding subunit [Propionibacterium
           acnes KPA171202]
 gi|282582304|gb|EFB87686.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes J139]
 gi|314923823|gb|EFS87654.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL001PA1]
 gi|314966163|gb|EFT10262.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL082PA2]
 gi|314982028|gb|EFT26121.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL110PA3]
 gi|315090842|gb|EFT62818.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL110PA4]
 gi|315095054|gb|EFT67030.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL060PA1]
 gi|315104286|gb|EFT76262.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL050PA2]
 gi|315106806|gb|EFT78782.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL030PA1]
 gi|327328167|gb|EGE69936.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL103PA1]
          Length = 429

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 58/135 (42%), Gaps = 37/135 (27%)

Query: 21  LLRPRTLEEF-----TGQVEACSNLKVFI---------EAAKARAE---------ALDHV 57
           L RPR L EF      GQ EA   L V +         EA   RA             ++
Sbjct: 62  LPRPRELCEFLDAWVIGQEEAKRTLSVAVYNHYKRIQSEANVPRARRAEDDGVELGKSNI 121

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------------- 103
           L +GP G GKT LAQ +AR+L V F       + +AG +   + N+              
Sbjct: 122 LMLGPTGCGKTYLAQTMARQLNVPFAMADATALTEAGYVGEDVENILLKLLQAADFDVKR 181

Query: 104 EDRDVLFIDEIHRLS 118
            +R +++IDEI +++
Sbjct: 182 AERGIVYIDEIDKVA 196


>gi|213054513|gb|ACJ39432.1| cdc48 [Larimichthys crocea]
          Length = 806

 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 573

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 574 LFFDELDSIA 583



 Score = 37.0 bits (84), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT +A+ VA E G  F   +GP I
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274


>gi|196007494|ref|XP_002113613.1| hypothetical protein TRIADDRAFT_57218 [Trichoplax adhaerens]
 gi|190584017|gb|EDV24087.1| hypothetical protein TRIADDRAFT_57218 [Trichoplax adhaerens]
          Length = 943

 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +LF GPPG GKT LA+ VA E  +NF S  GP
Sbjct: 703 LLFYGPPGTGKTLLAKAVATECSLNFLSVKGP 734


>gi|148670554|gb|EDL02501.1| valosin containing protein, isoform CRA_b [Mus musculus]
          Length = 822

 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 530 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 589

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 590 LFFDELDSIA 599



 Score = 37.0 bits (84), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT +A+ VA E G  F   +GP I
Sbjct: 257 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 290


>gi|262066195|ref|ZP_06025807.1| DNA polymerase III, gamma and tau subunit [Fusobacterium
           periodonticum ATCC 33693]
 gi|291380102|gb|EFE87620.1| DNA polymerase III, gamma and tau subunit [Fusobacterium
           periodonticum ATCC 33693]
          Length = 482

 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 101/227 (44%), Gaps = 32/227 (14%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP +  E +G+ E   +LK+ ++  K+ A A    LF GP G+GKTT+A+++A+  GVN 
Sbjct: 10  RPSSFSEVSGENEIVKSLKLSLKN-KSMAHAY---LFSGPRGVGKTTIARLIAK--GVNC 63

Query: 83  RS--TSGPVIAKAGDLAAL-------LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
            +    G    +  +  A+       L  ++      IDEI  L    E+I Y  +E  +
Sbjct: 64  LNLGEDGEPCNECKNCKAINEGRFSDLIEIDAASNRSIDEIRSLK---EKINYQPVEGLK 120

Query: 134 LDLMVGEGPSARSVKINL---------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNF-- 182
              ++ E         N          S    I ATT +  +   +  R     R +F  
Sbjct: 121 KVYIIDEAHMLTKEAFNALLKTLEEPPSHVMFILATTELDKILPTIISRCQ---RYDFKA 177

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
            +IED+K+ ++   K   L+++DE    I   S G+ R +  +L R+
Sbjct: 178 LDIEDMKSGLKHILKEENLSMSDEVYPLIYENSSGSMRDSISILERL 224


>gi|255076839|ref|XP_002502086.1| predicted protein [Micromonas sp. RCC299]
 gi|226517351|gb|ACO63344.1| predicted protein [Micromonas sp. RCC299]
          Length = 543

 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 44/92 (47%), Gaps = 9/92 (9%)

Query: 35  EACSNLKVFIEA-AKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK- 92
           EA    + + EA A+  A+    VL  GPPG  KT LA+ VA E G NF S  GP +   
Sbjct: 308 EAVEWTEKYPEAMARLGAKPPKGVLLYGPPGCSKTMLARAVASESGRNFLSVKGPELYSK 367

Query: 93  -AGDLAALLTNLEDR------DVLFIDEIHRL 117
             GD    +  L  R       V+FIDEI  L
Sbjct: 368 WVGDSEKAVRTLFRRAKTSAPSVIFIDEIDGL 399


>gi|254514312|ref|ZP_05126373.1| AAA ATPase, central domain protein [gamma proteobacterium NOR5-3]
 gi|219676555|gb|EED32920.1| AAA ATPase, central domain protein [gamma proteobacterium NOR5-3]
          Length = 411

 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 77/178 (43%), Gaps = 28/178 (15%)

Query: 50  RAEALDHVLFVGPPGLGKTTLAQVV-----ARELGVNFRSTSGPVIAKAGDLAALLTNLE 104
           + E L  ++  GPPG+GKTTLAQ++     +R L ++        I +A  +        
Sbjct: 21  QGEPLHSMILWGPPGVGKTTLAQLLCDASDSRMLKLSAVMDGVKAIREAVAVGEAERASG 80

Query: 105 DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTR-- 162
            + VLF+DE+HR +   ++   P +E+  L                    TLI ATT   
Sbjct: 81  RQCVLFVDEVHRFNKSQQDAFLPFVENGTL--------------------TLIGATTENP 120

Query: 163 VGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPR 220
              L + L  R  +  RL    +++L  I+ RG    GL + D     +A+ + G  R
Sbjct: 121 AFELNSALLSRARV-YRLRSLSVDELVMILHRGEIEVGLELNDLQRQRLALAADGDAR 177


>gi|126653989|ref|ZP_01725824.1| hypothetical protein BB14905_09600 [Bacillus sp. B14905]
 gi|126589506|gb|EAZ83649.1| hypothetical protein BB14905_09600 [Bacillus sp. B14905]
          Length = 420

 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 62/258 (24%), Positives = 104/258 (40%), Gaps = 49/258 (18%)

Query: 22  LRPRTLEEFTGQVEACS-NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           +RP TL+E  G  +    N  ++      + E +  +L  G PG+GKT++A  +A    +
Sbjct: 1   MRPLTLDEIVGHQDFIGPNTALY---KMIQNEHVPSMLLYGEPGIGKTSIANAIAGSSQL 57

Query: 81  NFRSTSGPVIAKAGDLAALLTN--LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138
            F + +     K  D+  ++    +  + +LF+DEIHR + + ++ L P +E+       
Sbjct: 58  PFFALNATRAGKK-DVEDIVQEARISGKVLLFLDEIHRFNKLQQDTLLPHVEN------- 109

Query: 139 GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-------RFGIPIRLNFYEIEDLKTI 191
                            LI ATT      NP  D       R G   +L     E+L  +
Sbjct: 110 -------------GSIVLIGATTE-----NPYHDVNPAIRSRCGEIYQLKRLTKENLMEL 151

Query: 192 VQ-------RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           V+       RG       +T      IA  + G  R A  LL  +   ++    +TI  +
Sbjct: 152 VEKALADEKRGLGKYHFVLTPSQIEHIAEAANGDARKALTLLESIYYASDEVEGQTIAAD 211

Query: 245 -IADAALLRLAI--DKMG 259
            I D  + R+ +  DK G
Sbjct: 212 HIIDHLISRIGVYGDKKG 229


>gi|126341342|ref|XP_001368768.1| PREDICTED: similar to peroxisome biogenesis disorder protein 1
           isoform 1 [Monodelphis domestica]
          Length = 1290

 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 23/32 (71%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT +A V+ARE G+NF S  GP
Sbjct: 884 ILLYGPPGTGKTLIAGVIARESGMNFISIKGP 915


>gi|73971224|ref|XP_866152.1| PREDICTED: similar to Transitional endoplasmic reticulum ATPase
           (TER ATPase) (15S Mg(2+)-ATPase p97 subunit)
           (Valosin-containing protein) (VCP) isoform 10 [Canis
           familiaris]
          Length = 762

 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 470 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 529

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 530 LFFDELDSIA 539



 Score = 37.0 bits (84), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 25/49 (51%)

Query: 42  VFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +  E    + E    +L  GPPG GKT +A+ VA E G  F   +GP I
Sbjct: 182 IHCEGEPIKREPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 230


>gi|330508645|ref|YP_004385073.1| AAA family ATPase [Methanosaeta concilii GP-6]
 gi|328929453|gb|AEB69255.1| AAA family ATPase, CDC48 subfamily [Methanosaeta concilii GP-6]
          Length = 725

 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 39/76 (51%), Gaps = 8/76 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DV 108
           VL  GPPG GKT +A+ VA E   NF S SGP I     G+    L  + D        +
Sbjct: 218 VLLHGPPGTGKTLIARAVAGETDANFISISGPEIVSKFYGESEQRLRQIFDEASKAAPSI 277

Query: 109 LFIDEIHRLSIIVEEI 124
           +FIDEI  ++   EE+
Sbjct: 278 IFIDEIDSIAPKREEV 293


>gi|317507132|ref|ZP_07964892.1| ATPase [Segniliparus rugosus ATCC BAA-974]
 gi|316254578|gb|EFV13888.1| ATPase [Segniliparus rugosus ATCC BAA-974]
          Length = 449

 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 53/109 (48%), Gaps = 17/109 (15%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED---------RD 107
           V+  GPPG GKTT+A +++   G  F + S    A    +  +   +ED         R 
Sbjct: 48  VVLHGPPGTGKTTIASLLSSATGREFVALS----ALTAGVKEVREVIEDARMRLAAGVRT 103

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG---EGPSARSVKINLSR 153
           VLFIDE+HR S   ++ L  A+E  Q+ L+V    E P    V   LSR
Sbjct: 104 VLFIDEVHRFSKTQQDALLAAVE-HQIVLLVAATTENPGFAVVSPLLSR 151


>gi|326784294|ref|YP_004324752.1| clamp loader subunit [Synechococcus phage S-SSM5]
 gi|310003525|gb|ADO97921.1| clamp loader subunit [Synechococcus phage S-SSM5]
          Length = 314

 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 59/121 (48%), Gaps = 15/121 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T++E        +  K FIE  +     + ++L  G  G+GKTT+A+ +  ELG ++
Sbjct: 12  RPQTVDECILPESVKTTFKSFIEQGE-----IPNLLLSGTAGVGKTTIAKALCNELGADY 66

Query: 83  RSTSGP--------VIAKAGDLAAL--LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
              +G         V  +A + AA   LT      VL IDE    +  V+ +L  ++E+F
Sbjct: 67  YVINGSDEGRFLDTVRNQAKNFAATVSLTASARHKVLIIDEADNTTPDVQLLLRASIEEF 126

Query: 133 Q 133
           Q
Sbjct: 127 Q 127


>gi|300865996|ref|ZP_07110730.1| vesicle-fusing ATPase [Oscillatoria sp. PCC 6506]
 gi|300335987|emb|CBN55888.1| vesicle-fusing ATPase [Oscillatoria sp. PCC 6506]
          Length = 611

 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 56/109 (51%), Gaps = 16/109 (14%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
           +L++  G  +    LK  +     R E L+         VL VGPPG GKT  A+ +A E
Sbjct: 86  SLQDVGGLGQVLKELKELVAIPLKRPELLEKLGLEPTKGVLLVGPPGTGKTLTARALADE 145

Query: 78  LGVNFRSTSGP-VIAK-AGDLAALLTNLEDRD------VLFIDEIHRLS 118
           LGVN+ + +GP V++K  G+    L  + ++       ++FIDEI  L+
Sbjct: 146 LGVNYIALAGPEVMSKYYGEAEQKLRAIFEKAAKNAPCLVFIDEIDSLA 194



 Score = 39.3 bits (90), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 38/79 (48%), Gaps = 8/79 (10%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLT 101
           + +A A   +L  GPPG GKT LA+ VA +   NF   +GP      V A    +  L T
Sbjct: 382 QTKAIAPRGILLWGPPGTGKTLLAKAVASQARANFICVNGPELLSRWVGASEQAVRELFT 441

Query: 102 NLEDRD--VLFIDEIHRLS 118
                   V+FIDEI  L+
Sbjct: 442 KARQASPCVVFIDEIDSLA 460


>gi|237745424|ref|ZP_04575904.1| DNA-binding ATP-dependent protease La [Oxalobacter formigenes
           HOxBLS]
 gi|229376775|gb|EEO26866.1| DNA-binding ATP-dependent protease La [Oxalobacter formigenes
           HOxBLS]
          Length = 815

 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 97/229 (42%), Gaps = 41/229 (17%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLA 71
           S +  DI+  R    E+  G  +    +  F+   K   E    +L FVGPPG+GKT+L 
Sbjct: 337 SDDRTDINEARQILDEDHYGLEKVKKRILEFLAVHKLNPEGKSPLLCFVGPPGVGKTSLG 396

Query: 72  QVVARELGVNF-RSTSGPVIAKA-------GDLAALLTNL--------EDRDVLFIDEIH 115
           Q +AR  G  F R + G V  +A         + AL  N+         +  V+ +DE+ 
Sbjct: 397 QSIARATGRKFVRVSMGGVHDEAEIRGHRRTYIGALPGNIIQAIRRAGTNNCVMLLDEVD 456

Query: 116 RLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           +L   V+        E+L PA      D  +       +V  +LS+   I        + 
Sbjct: 457 KLGSGVQGDPSAALLEVLDPAQNSTFRDNYL-------AVPFDLSKVMFICTANMPDTIP 509

Query: 168 NPLQDRFGIPIRLNFYEIED-----LKTIVQRGAKLTGLAVTDEAACEI 211
            PL+DR  + I+L  Y  ++     L+ +++R  +  GL   +   CEI
Sbjct: 510 GPLRDRLEM-IQLPGYTEQEKTQIALRYLIRRQREENGLKPEN---CEI 554


>gi|160331231|ref|XP_001712323.1| cdc48b [Hemiselmis andersenii]
 gi|159765770|gb|ABW97998.1| cdc48b [Hemiselmis andersenii]
          Length = 780

 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ +A E   NF S  GP
Sbjct: 501 VLFYGPPGCGKTLLAKAIANECQANFISIKGP 532



 Score = 36.2 bits (82), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 56/134 (41%), Gaps = 28/134 (20%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLEDR--DV 108
           +L  GPPG GKT +A+ VA E G      +GP I          +L       E     +
Sbjct: 228 ILMYGPPGSGKTLIARAVANEAGAFLFVINGPEIMSKLSGESESNLRKAFEEAEKNSPSI 287

Query: 109 LFIDEIHRLSII-------VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATT 161
           +FIDEI  L+         VE+ +   +    L LM G  P ++ V        +IA T 
Sbjct: 288 IFIDEIDSLAPKRDKTQGEVEKKIVSQL----LTLMDGISPKSQVV--------VIACTN 335

Query: 162 RVGLLTNPLQDRFG 175
           R   + +P   RFG
Sbjct: 336 RPNSI-DPSLRRFG 348


>gi|156742142|ref|YP_001432271.1| ATP-dependent protease La [Roseiflexus castenholzii DSM 13941]
 gi|156233470|gb|ABU58253.1| ATP-dependent protease La [Roseiflexus castenholzii DSM 13941]
          Length = 821

 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 70/160 (43%), Gaps = 32/160 (20%)

Query: 59  FVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLTNL 103
           FVGPPG+GKT+L Q +AR LG  F R + G V  +A              G L   L   
Sbjct: 365 FVGPPGVGKTSLGQSIARALGRQFARMSLGGVRDEAELRGFRRTYIGSQPGRLIQELRRA 424

Query: 104 EDRD-VLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRF 154
              D VL +DEI +L        +  + E+L P   D   D  +       +V  +LS+ 
Sbjct: 425 GTSDPVLLLDEIDKLGHDYRGDPAAALLEVLDPEQNDTFTDHYL-------NVPFDLSKV 477

Query: 155 TLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
             IA    +  +   L+DR  + I L+ Y  ++   I QR
Sbjct: 478 LFIATANTMDTVPPALRDRMEV-IELSGYTGDEKVHIAQR 516


>gi|319937422|ref|ZP_08011829.1| ATP-dependent protease La [Coprobacillus sp. 29_1]
 gi|319807788|gb|EFW04381.1| ATP-dependent protease La [Coprobacillus sp. 29_1]
          Length = 774

 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 73/162 (45%), Gaps = 32/162 (19%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA---GDLAALLTNLEDR------ 106
           +  VGPPG+GKT++++ +AR LG  F +++ G V  +A   G     L ++  R      
Sbjct: 353 ICLVGPPGVGKTSISKSIARALGRKFVKASLGGVKDEAEIRGHRRTYLGSMPGRIIQSMK 412

Query: 107 ------DVLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLS 152
                  V  +DEI ++S   +        E+L P    F  D  + E         +LS
Sbjct: 413 KAGVINPVFLLDEIDKMSSDYKGDPTSAMLEVLDPEQNQFFSDNYLEE-------PYDLS 465

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           +   IA    +G +  PL+DR  I I ++ Y  ++   I +R
Sbjct: 466 KVLFIATANDLGSIPEPLRDRLEI-IEISSYTEQEKLEIAKR 506


>gi|308480473|ref|XP_003102443.1| CRE-MAC-1 protein [Caenorhabditis remanei]
 gi|308261175|gb|EFP05128.1| CRE-MAC-1 protein [Caenorhabditis remanei]
          Length = 841

 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT LA+ VA E G+NF S  GP
Sbjct: 587 ILLCGPPGCGKTLLAKSVANETGMNFISVKGP 618


>gi|297569272|ref|YP_003690616.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296925187|gb|ADH85997.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 419

 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 59/134 (44%), Gaps = 31/134 (23%)

Query: 16  DADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEA------------LDHVL 58
           D+ + LL+P  ++E       GQ  A  +L V +     R E               ++L
Sbjct: 57  DSGVPLLKPSEIKELLDEYVVGQERAKRSLAVAVHNHYKRVEGDLEGDYQDVELQKSNIL 116

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL----------E 104
            +GP G GKT LAQ +AR L V F       + +AG    D+  +L +L           
Sbjct: 117 LIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILVSLLQAADNDVERA 176

Query: 105 DRDVLFIDEIHRLS 118
            R +++IDEI +++
Sbjct: 177 SRGIVYIDEIDKIA 190


>gi|297561877|ref|YP_003680851.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296846325|gb|ADH68345.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 428

 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 69/150 (46%), Gaps = 36/150 (24%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEF-----TGQVEACSNLKV--FIEAAKARAE- 52
           M + EG+L    S+ D D SL +PR + EF      GQ +A   L V  +    + R+E 
Sbjct: 47  MEEEEGVLP---SEADWD-SLPKPREIYEFLDSYVIGQEQAKKALSVAVYNHYKRVRSEG 102

Query: 53  ----------ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTN 102
                     A  ++L +GP G GKT LAQ +AR L V F       + +AG +   + N
Sbjct: 103 DRPGEEDVEIAKSNILLLGPTGSGKTLLAQTLARILNVPFAIADATALTEAGYVGEDVEN 162

Query: 103 L-------EDRDV-------LFIDEIHRLS 118
           +        D DV       ++IDE+ +++
Sbjct: 163 ILLKLIQAADYDVKKAETGIIYIDEVDKVA 192


>gi|50552452|ref|XP_503636.1| YALI0E06655p [Yarrowia lipolytica]
 gi|49649505|emb|CAG79218.1| YALI0E06655p [Yarrowia lipolytica]
          Length = 774

 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 9/80 (11%)

Query: 18  DISLLRPRT-LEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKT 68
           +I L +P T   +  GQ      LK  +E    +A+ + +        VL  GPPG  KT
Sbjct: 500 EIFLEKPSTTWSDIGGQSGVKEKLKQMVEWPLTKADTMKNLGITPPRGVLLYGPPGCSKT 559

Query: 69  TLAQVVARELGVNFRSTSGP 88
            +A+ +A E G+NF S  GP
Sbjct: 560 LIAKALANESGLNFLSVKGP 579


>gi|15643274|ref|NP_228318.1| recombination factor protein RarA/unknown domain fusion protein
           [Thermotoga maritima MSB8]
 gi|20178177|sp|Q9WYX8|Y508_THEMA RecName: Full=UPF0189 protein TM_0508
 gi|4981020|gb|AAD35593.1|AE001727_5 conserved hypothetical protein [Thermotoga maritima MSB8]
          Length = 599

 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 60/140 (42%), Gaps = 9/140 (6%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG- 79
           LLRP+  E+F GQ     N  +     K        +L+ GPPG GKT++  ++ R    
Sbjct: 11  LLRPKDFEDFVGQDHIFGNKGILRRTLKT-GNMFSSILY-GPPGSGKTSVFSLLKRYFNG 68

Query: 80  --VNFRSTSGPV--IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME--DFQ 133
             V   ST   V  I         L     + +LF+DEIHRL+   + +L   +E  D  
Sbjct: 69  EVVYLSSTVHGVSEIKNVLKRGEQLRKYGKKLLLFLDEIHRLNKNQQMVLVSHVERGDIV 128

Query: 134 LDLMVGEGPSARSVKINLSR 153
           L     E PS   V   LSR
Sbjct: 129 LVATTTENPSFVIVPALLSR 148


>gi|324514039|gb|ADY45741.1| RuvB-like protein 1 [Ascaris suum]
          Length = 491

 Score = 44.3 bits (103), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 30/50 (60%)

Query: 30  FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           F GQ+EA     + +E  ++R  A   +LF GPPG GKT +A  +A ELG
Sbjct: 54  FIGQLEAREAAGIIVEMIRSRRMAGRAILFAGPPGTGKTAIALAMAHELG 103


>gi|323705367|ref|ZP_08116942.1| stage V sporulation protein K [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323535269|gb|EGB25045.1| stage V sporulation protein K [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 296

 Score = 44.3 bits (103), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 104/248 (41%), Gaps = 68/248 (27%)

Query: 56  HVLFVGPPGLGKTTLAQVVAREL-GVNFRSTSGPVIAKAGDLAA---------LLTNLED 105
           H++F G PG GKTT+A+++ + L G+   +    V  +  DL           +  N++ 
Sbjct: 78  HMVFKGNPGTGKTTVARILGKLLKGIGVLNKGHVVEVERADLVGEYIGHTAHRVQENVKK 137

Query: 106 R--DVLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLSRFT 155
               +LF+DE + L+   E        + L  AMED++                   +F 
Sbjct: 138 ALGGILFVDEAYSLARGGEKDFGKEAIDTLVKAMEDYK------------------DQFV 179

Query: 156 LIAATTR----VGLLTNP-LQDRFGIPIRLNF--YEIEDLKTIVQRGAKLTGLAVTDEAA 208
           LI A  R      L TNP L+ RF  PI+++F  Y I++L  I +   K     +TD A 
Sbjct: 180 LILAGYRDEMEYFLNTNPGLRSRF--PIQIDFPDYTIDELLRIAELMTKNRQYVLTDSAK 237

Query: 209 CEI--------AMRSRGTPRIAGRLLRRV--RDFAEVAHAKTITREIADAALLRLAIDKM 258
            +I          R  G  R+   ++ R   +    V + KTIT++           D M
Sbjct: 238 RKIMKVLINDNTTREIGNARLVRNIIERAIRKQAVRVINKKTITKD-----------DLM 286

Query: 259 GFDQLDLR 266
             D +D+R
Sbjct: 287 IIDSIDIR 294


>gi|260433268|ref|ZP_05787239.1| putative Cell division protease FtsH family protein [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260417096|gb|EEX10355.1| putative Cell division protease FtsH family protein [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 610

 Score = 44.3 bits (103), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 52/107 (48%), Gaps = 15/107 (14%)

Query: 26  TLEEFTGQVEACSNLKVFIE-------AAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           + ++  G  EA + L+  +E         K  A     +L VGPPG GKT LA+ VA E 
Sbjct: 154 SFDDVAGVDEAKAELQEVVEFLKDPEAYGKLGAHVPKGILLVGPPGTGKTLLARAVAGEA 213

Query: 79  GVNFRSTSGPVIAK--AGDLAALLTNLEDR------DVLFIDEIHRL 117
           GV F S SG    +   G  AA + +L D+       ++FIDE+  L
Sbjct: 214 GVTFFSISGSEFVEMFVGVGAARVRDLFDQARKSAPAIIFIDELDAL 260


>gi|138896137|ref|YP_001126590.1| recombination factor protein RarA [Geobacillus thermodenitrificans
           NG80-2]
 gi|196250090|ref|ZP_03148784.1| AAA ATPase central domain protein [Geobacillus sp. G11MC16]
 gi|134267650|gb|ABO67845.1| ATPase, AAA family [Geobacillus thermodenitrificans NG80-2]
 gi|196210274|gb|EDY05039.1| AAA ATPase central domain protein [Geobacillus sp. G11MC16]
          Length = 431

 Score = 44.3 bits (103), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 56/114 (49%), Gaps = 11/114 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE---- 77
           +RPRT+++  GQ           +  K     +  +L  G PG GKT+LA  +AR     
Sbjct: 12  MRPRTIDDIVGQEHIIGPETPLYKMIKK--GYVPSLLLYGEPGTGKTSLAYAIARTAERE 69

Query: 78  -LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
            + +N  S     I +A + A    N+    +LFIDEIHRL+   +++L P +E
Sbjct: 70  LIAINATSAGKKEIEEAAEAARWSGNV----LLFIDEIHRLNKAQQDVLLPHLE 119


>gi|314919375|gb|EFS83206.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL050PA1]
          Length = 429

 Score = 44.3 bits (103), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 58/135 (42%), Gaps = 37/135 (27%)

Query: 21  LLRPRTLEEF-----TGQVEACSNLKVFI---------EAAKARAE---------ALDHV 57
           L RPR L EF      GQ EA   L V +         EA   RA             ++
Sbjct: 62  LPRPRELCEFLDASVIGQEEAKRTLSVAVYNHYKRIQSEANVPRARRAEDDGVELGKSNI 121

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------------- 103
           L +GP G GKT LAQ +AR+L V F       + +AG +   + N+              
Sbjct: 122 LMLGPTGCGKTYLAQTMARQLNVPFAMADATALTEAGYVGEDVENILLKLLQAADFDVKR 181

Query: 104 EDRDVLFIDEIHRLS 118
            +R +++IDEI +++
Sbjct: 182 AERGIVYIDEIDKVA 196


>gi|237839531|ref|XP_002369063.1| replication factor C small subunit, putative [Toxoplasma gondii
          ME49]
 gi|211966727|gb|EEB01923.1| replication factor C small subunit, putative [Toxoplasma gondii
          ME49]
 gi|221483291|gb|EEE21610.1| replication factor C / DNA polymerase III gamma-tau subunit,
          putative [Toxoplasma gondii GT1]
 gi|221507780|gb|EEE33367.1| replication factor C / DNA polymerase III gamma-tau subunit,
          putative [Toxoplasma gondii VEG]
          Length = 357

 Score = 44.3 bits (103), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RPR +E+   QVE    L+  +E        + H+LF GPPG GKT+ A  + REL
Sbjct: 38 RPRRVEDMAHQVEPKKMLRRILETGN-----MPHLLFYGPPGTGKTSAALALVREL 88


>gi|163815264|ref|ZP_02206641.1| hypothetical protein COPEUT_01424 [Coprococcus eutactus ATCC 27759]
 gi|158449459|gb|EDP26454.1| hypothetical protein COPEUT_01424 [Coprococcus eutactus ATCC 27759]
          Length = 457

 Score = 44.3 bits (103), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 60/129 (46%), Gaps = 28/129 (21%)

Query: 18  DISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEAL---------DHVLFVGPP 63
           D++LL+P+ ++ F      GQ EA   L V +     R  A           ++L VGP 
Sbjct: 79  DVNLLKPKEIKSFLDEYVIGQEEAKKVLAVAVYNHYKRILAQKDFDVELQKSNILMVGPT 138

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---EDRD-------VL 109
           G GKT LAQ +A+ L V F       + +AG    D+  +L  L    D D       ++
Sbjct: 139 GSGKTYLAQTLAKLLNVPFAIADATTLTEAGYVGEDVENILLKLIQAADYDIERAEHGII 198

Query: 110 FIDEIHRLS 118
           +IDEI +++
Sbjct: 199 YIDEIDKIT 207


>gi|115918066|ref|XP_785648.2| PREDICTED: similar to Nuclear VCP-like [Strongylocentrotus
           purpuratus]
 gi|115960912|ref|XP_001195929.1| PREDICTED: similar to Nuclear VCP-like [Strongylocentrotus
           purpuratus]
          Length = 742

 Score = 44.3 bits (103), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT LA+ +A E G+NF S  GP
Sbjct: 570 ILLAGPPGCGKTLLAKAIANESGINFISVKGP 601


>gi|86158132|ref|YP_464917.1| ATP-dependent protease La [Anaeromyxobacter dehalogenans 2CP-C]
 gi|123497699|sp|Q2IIK1|LON_ANADE RecName: Full=Lon protease; AltName: Full=ATP-dependent protease La
 gi|85774643|gb|ABC81480.1| ATP-dependent protease La [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 843

 Score = 44.3 bits (103), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 98/242 (40%), Gaps = 57/242 (23%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA---GDLAALLTNLEDR------ 106
           + FVGPPG+GKT+L Q +AR  G  F R + G V  +A   G     +  L  R      
Sbjct: 384 LCFVGPPGVGKTSLGQSIARATGRKFVRLSLGGVRDEAEIRGHRRTYVGALPGRIIQSMK 443

Query: 107 ------DVLFIDEIHRL--------SIIVEEILYP----AMEDFQLDLMVGEGPSARSVK 148
                  V+ +DEI +L        S  + E+L P    A  D  LDL            
Sbjct: 444 KAATVNPVMMLDEIDKLGADFRGDPSAALLEVLDPEQNHAFSDHYLDL-----------S 492

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ----------RGAKL 198
            +LS+   I     +  +  PL+DR  I + L  Y  E+   I Q           G   
Sbjct: 493 YDLSKVMFIGTANLLDPIPGPLKDRMEI-LELPGYTFEEKVHIAQNHLIPKQLREHGLSA 551

Query: 199 TGLAVTDEAACEIAM---RSRGTPRIAGRLLRRVRDFA-EVAHAK---TITREIADAALL 251
             +A++++A  +I M   R  G   +  R+    R  A EVA  K   +  R I +A +L
Sbjct: 552 DAIAISEKALIKIIMAYTREAGVRNLERRIADVCRAIAVEVASGKIGASAKRSIEEADVL 611

Query: 252 RL 253
            +
Sbjct: 612 EI 613


>gi|254884991|ref|ZP_05257701.1| ATP-dependent Clp protease [Bacteroides sp. 4_3_47FAA]
 gi|319640393|ref|ZP_07995117.1| ATP-dependent Clp protease [Bacteroides sp. 3_1_40A]
 gi|254837784|gb|EET18093.1| ATP-dependent Clp protease [Bacteroides sp. 4_3_47FAA]
 gi|317387996|gb|EFV68851.1| ATP-dependent Clp protease [Bacteroides sp. 3_1_40A]
          Length = 742

 Score = 43.9 bits (102), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 4/71 (5%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKA----RAEALDHVLFVGPPGLGKTT 69
           +++A +  L  R   +  GQ EA   +   ++ AKA      + L  +LFVGP G+GKT 
Sbjct: 438 EDNATLETLYERISAKIYGQEEAVCQVVEAVQMAKAGLLDENKPLASLLFVGPTGVGKTE 497

Query: 70  LAQVVARELGV 80
           +A+V+A ELG+
Sbjct: 498 VAKVLASELGI 508


>gi|170577995|ref|XP_001894218.1| replication factor C, 37kDa subunit [Brugia malayi]
 gi|158599258|gb|EDP36928.1| replication factor C, 37kDa subunit, putative [Brugia malayi]
          Length = 315

 Score = 43.9 bits (102), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 8/67 (11%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          +   RPR +EE   Q E  S LK  ++ A      L ++LF GPPG GKT+ A  + R+L
Sbjct: 24 VEKYRPRKVEEVAFQNEVVSVLKKVLQGAD-----LPNLLFYGPPGTGKTSAAIALCRQL 78

Query: 79 GVNFRST 85
             FR+T
Sbjct: 79 ---FRNT 82


>gi|186682508|ref|YP_001865704.1| ATPase [Nostoc punctiforme PCC 73102]
 gi|186464960|gb|ACC80761.1| AAA ATPase, central domain protein [Nostoc punctiforme PCC 73102]
          Length = 607

 Score = 43.9 bits (102), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 45/70 (64%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDRD------V 108
           VL VGPPG GKT  A+V+A EL +N+ + +GP V++K  G+  A L ++ ++       +
Sbjct: 123 VLLVGPPGTGKTLTARVLAEELELNYIAINGPEVMSKYYGEAEARLRSIFEKATRSAPCL 182

Query: 109 LFIDEIHRLS 118
           +FIDEI  L+
Sbjct: 183 IFIDEIDSLA 192


>gi|299856777|pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
           Domain
 gi|299856778|pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
           Domain
 gi|299856779|pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
           Domain
 gi|299856780|pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
           Domain
 gi|299856781|pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
           Domain
 gi|299856782|pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
           Domain
          Length = 543

 Score = 43.9 bits (102), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 76/197 (38%), Gaps = 58/197 (29%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF------------------RSTSGPV-------IA 91
           +   GPPG+GKT+LA+ +A+ LG  F                  R+  G +       + 
Sbjct: 111 LCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMK 170

Query: 92  KAGDLAALLTNLEDRDVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPS 143
           KAG L           V  +DEI ++        S  + E+L P       D  + E   
Sbjct: 171 KAGKL---------NPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEE--- 218

Query: 144 ARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL---------KTIVQR 194
                 +LS+   IA    +  +  PL+DR  I     + EIE L         K I + 
Sbjct: 219 ----TFDLSKVLFIATANNLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHLLPKQIKEH 274

Query: 195 GAKLTGLAVTDEAACEI 211
           G K + L + D+A  +I
Sbjct: 275 GLKKSNLQLRDQAILDI 291


>gi|308808470|ref|XP_003081545.1| cell division protein FtsH (ISS) [Ostreococcus tauri]
 gi|116060010|emb|CAL56069.1| cell division protein FtsH (ISS) [Ostreococcus tauri]
          Length = 966

 Score = 43.9 bits (102), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 57/119 (47%), Gaps = 15/119 (12%)

Query: 11  NVSQEDADISLLRPRTLEEFTG-------QVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           N++    D ++ +  +L++ +G        +E  S LK F +     A     VL  GPP
Sbjct: 351 NMTTRQYDSTVRQGMSLKDISGIDTVKEEMLELISYLKDFDKYNSMGARIPAGVLLCGPP 410

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEI 114
           G GKT LA+ VA E GV F S +G    +   G  AA + NL D+       ++FIDE 
Sbjct: 411 GTGKTLLARCVAGEAGVPFFSCAGTEFMEMFVGVGAARIRNLFDQAKKVAPCIIFIDEF 469


>gi|326693436|ref|ZP_08230441.1| DNA polymerase III subunits gamma and tau [Leuconostoc argentinum
           KCTC 3773]
          Length = 589

 Score = 43.9 bits (102), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 52/119 (43%), Gaps = 29/119 (24%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELG 79
           + RPRT ++  GQ      LK  IE      E   H  LF GP G GKT+ A++ ARE+ 
Sbjct: 9   VYRPRTFDDMIGQEVITQTLKNAIET-----EQTGHAYLFSGPRGTGKTSAAKIFAREVN 63

Query: 80  --------------VNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLS 118
                         V F + S    ++  D+  +L N++         V  IDE+H LS
Sbjct: 64  GIDPQTDDAQIPDIVEFDAASN---SRVEDMRDILANVDYAPIEAKYKVYIIDEVHMLS 119


>gi|156368649|ref|XP_001627805.1| predicted protein [Nematostella vectensis]
 gi|156214725|gb|EDO35705.1| predicted protein [Nematostella vectensis]
          Length = 613

 Score = 43.9 bits (102), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT LA+ +A E G+NF S  GP
Sbjct: 327 ILLAGPPGCGKTLLAKAIANESGINFISVKGP 358


>gi|46446096|ref|YP_007461.1| putative endopeptidase (ATP-dependent serine protease) La
           [Candidatus Protochlamydia amoebophila UWE25]
 gi|81829044|sp|Q6ME13|LON_PARUW RecName: Full=Lon protease; AltName: Full=ATP-dependent protease La
 gi|46399737|emb|CAF23186.1| putative endopeptidase (ATP-dependent serine protease) La
           [Candidatus Protochlamydia amoebophila UWE25]
          Length = 835

 Score = 43.9 bits (102), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 70/303 (23%), Positives = 122/303 (40%), Gaps = 55/303 (18%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAKAGDLAALLT 101
           +  VGPPG+GKT++ + +AR L   F   S                 V A  G +   L 
Sbjct: 383 ICLVGPPGVGKTSIGKSIARALNRKFYRFSVGGMRDEAEIKGHRRTYVGAMPGKMIQALK 442

Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLS 152
             +  + V+ +DE+ ++    +        E+L P      LD  +        V+ NLS
Sbjct: 443 YCQTMNPVIMLDEVDKMGKSFQGDPASALLEVLDPEQNAEFLDHYL-------DVRCNLS 495

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED-----LKTIVQRGAKLTGLAVTDEA 207
               I     +  +  PL+DR  I +RL+ Y +++      K ++ R  K  GL   + +
Sbjct: 496 EVLFIVTANVLDTIPEPLKDRMDI-LRLSGYIMQEKLEIAKKYLIPRNRKEMGLKALEVS 554

Query: 208 ACEIAMRS--RGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDL 265
             + A+RS   G  R +G     VR+   +   K I R++A   ++R        ++ D 
Sbjct: 555 FTQEALRSIINGYARESG-----VRNLENL--LKKILRKLA-VNIVREQ------EEHDK 600

Query: 266 RYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQ 325
                   +    P+        ++ P +  + L +P      F +RTP G + M +AW 
Sbjct: 601 EQAKKKKSSRSKKPIAFVPTKHSIT-PSNLKDFLGKPVFTSDRFYERTPVG-VCMGLAWT 658

Query: 326 HLG 328
            +G
Sbjct: 659 AMG 661


>gi|124511780|ref|XP_001349023.1| cell division cycle ATPase, putative [Plasmodium falciparum 3D7]
 gi|45645005|sp|P46468|CDAT_PLAF7 RecName: Full=Putative cell division cycle ATPase
 gi|23498791|emb|CAD50861.1| cell division cycle ATPase, putative [Plasmodium falciparum 3D7]
          Length = 1229

 Score = 43.9 bits (102), Expect = 0.031,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57   VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
            +L  GPPG GKT LA+ +A E   NF S  GP +     G+  A + +L D+       +
Sbjct: 971  ILLYGPPGCGKTLLAKAIANECKANFISVKGPELLTMWFGESEANVRDLFDKARAASPCI 1030

Query: 109  LFIDEIHRLS 118
            +F DEI  L+
Sbjct: 1031 IFFDEIDSLA 1040


>gi|294101376|ref|YP_003553234.1| AAA family ATPase, CDC48 subfamily [Aminobacterium colombiense DSM
           12261]
 gi|293616356|gb|ADE56510.1| AAA family ATPase, CDC48 subfamily [Aminobacterium colombiense DSM
           12261]
          Length = 706

 Score = 43.9 bits (102), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 41/76 (53%), Gaps = 8/76 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDR------DV 108
           VL  GPPG GKT +A+ VA E  V F   SGP +I K  G+    L N+ D        +
Sbjct: 213 VLLYGPPGTGKTVIARAVANETDVYFTHISGPEIIGKFYGESEERLRNVFDEAQAHAPAI 272

Query: 109 LFIDEIHRLSIIVEEI 124
           +FIDEI  ++   EE+
Sbjct: 273 IFIDEIDAIAPKREEM 288



 Score = 35.8 bits (81), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 20/34 (58%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GP G GKT L + +A E GVNF    GP +
Sbjct: 488 ILLHGPSGTGKTLLVRALAHESGVNFIPVKGPAL 521


>gi|268608356|ref|ZP_06142083.1| hypothetical protein RflaF_02525 [Ruminococcus flavefaciens FD-1]
          Length = 606

 Score = 43.9 bits (102), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 50/105 (47%), Gaps = 15/105 (14%)

Query: 25  RTLEEFTGQVEACSNLKVFIE-------AAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +T E+  GQ EA   LK  ++        A+  A      L VGPPG GKT LAQ VA E
Sbjct: 160 KTFEDVAGQDEAKEALKEIVDFLHDPGKYAEIGANLPKGALLVGPPGTGKTLLAQAVAGE 219

Query: 78  LGVNFRSTSGPVIAK--AGDLAALLTNLEDRDV------LFIDEI 114
             V F S SG    +   G  AA + +L  + V      +FIDEI
Sbjct: 220 AEVPFFSISGSEFVEMFVGMGAAKVRDLFSQAVEKAPCIVFIDEI 264


>gi|301113936|ref|XP_002998738.1| peroxisome biogenesis factor, putative [Phytophthora infestans
           T30-4]
 gi|262112039|gb|EEY70091.1| peroxisome biogenesis factor, putative [Phytophthora infestans
           T30-4]
          Length = 1103

 Score = 43.9 bits (102), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT LA  VA E G+NF S  GP +
Sbjct: 840 MLLYGPPGCGKTLLASAVAHECGLNFISVKGPEV 873


>gi|225620632|ref|YP_002721890.1| ATP-dependent protease La [Brachyspira hyodysenteriae WA1]
 gi|225215452|gb|ACN84186.1| ATP-dependent protease La [Brachyspira hyodysenteriae WA1]
          Length = 841

 Score = 43.9 bits (102), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 84/336 (25%), Positives = 128/336 (38%), Gaps = 69/336 (20%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLA 71
           ++E  DIS  +     +  G  +    +  F+   K   E    +L FVGPPG+GKT++ 
Sbjct: 346 NKEREDISKSKKILDRDHYGLEDVKERIYEFLAVRKLNPEKKSSILCFVGPPGVGKTSIG 405

Query: 72  QVVARELGVNF------------------RSTSGPVIAKAGDLAALLTNLEDRDVLFIDE 113
           + +A  L   F                  R+  G +  K   + AL        VL +DE
Sbjct: 406 KSIAEALDRPFFRFSLGGMRDEAEIKGHRRTYIGAMPGKI--IEALKIVKVKNPVLMLDE 463

Query: 114 IHRLSIIVE--------EILYP----AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATT 161
           I +L    +        E+L P    +  D  LDL             +LS    I    
Sbjct: 464 IDKLGTSFQGDPSSALLEVLDPEQNASFRDHYLDL-----------PFDLSNVLFITTAN 512

Query: 162 RVGLLTNPLQDRFGIPIRLNFYEIEDL-----KTIVQRGAKLTGLAV-----TDEAACEI 211
            +  +  PL DR  + IRL+ Y +E+      K I+ R  K  GL +     T++A   I
Sbjct: 513 TLDTIPRPLLDRMEV-IRLSGYIMEEKLKIASKYIIPRQVKAHGLDIKNINFTNKAISAI 571

Query: 212 ---AMRSRGTPRIAGRLLRRVRDFAE--VAHAKTITREIAD----AALLRLAIDKMGFDQ 262
                R  G      R+ R  R  A   V H K     I D       L+  I    F +
Sbjct: 572 IDGYAREAGVRNFERRIERICRKIAADIVEHNKKTYSYIVDEKDLEKYLKKPIFTEDFTE 631

Query: 263 LDLR---YLTMIARNFGGGPVGIETISAGLSEPRDA 295
            DL+    + +   + GG  + IE+I   +SE +D+
Sbjct: 632 KDLKPGNSIGLAWTSLGGATLTIESIK--VSEKKDS 665


>gi|163756060|ref|ZP_02163176.1| DNA polymerase III subunit gamma/tau [Kordia algicida OT-1]
 gi|161323934|gb|EDP95267.1| DNA polymerase III subunit gamma/tau [Kordia algicida OT-1]
          Length = 587

 Score = 43.9 bits (102), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 101/238 (42%), Gaps = 41/238 (17%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T ++  GQ +A +N    +E A  R+     +LF GP G+GKTT A+++A++  +N 
Sbjct: 12  RPQTFKDVVGQ-QAITNT---LENAIERSHLAQALLFCGPRGVGKTTCARILAKK--INQ 65

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL--------------SIIVEEILYPA 128
             T  P      D A  +  L+      +D+I  L                I++E+   +
Sbjct: 66  DGTENP----DEDFAFNIFELDAASNNSVDDIRSLIEQVRIPPQVGKYKVYIIDEVHMLS 121

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI--E 186
              F   L   E P   ++         I ATT    +   +  R  I    +F  I  +
Sbjct: 122 QAAFNAFLKTLEEPPKHAI--------FILATTEKHKIIPTILSRCQI---FDFKRIGVK 170

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           D K  ++  A+  G+   D+A   IA ++ G  R A  +  RV  F+     K +TR+
Sbjct: 171 DAKEYLKYIAESQGVEADDDALHIIAQKADGAMRDALSIFDRVVSFS----GKQLTRQ 224


>gi|154308912|ref|XP_001553791.1| hypothetical protein BC1G_07984 [Botryotinia fuckeliana B05.10]
 gi|150852610|gb|EDN27802.1| hypothetical protein BC1G_07984 [Botryotinia fuckeliana B05.10]
          Length = 399

 Score = 43.9 bits (102), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%)

Query: 41  KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           ++F +  K R+     +LF GPPG GKT LA+ +A E  +NF S  GP
Sbjct: 183 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 226


>gi|119578807|gb|EAW58403.1| valosin-containing protein, isoform CRA_a [Homo sapiens]
          Length = 632

 Score = 43.9 bits (102), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 469 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 528

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 529 LFFDELDSIA 538



 Score = 37.0 bits (84), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 196 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 255

Query: 109 LFIDEIHRLS 118
           +FIDE+  ++
Sbjct: 256 IFIDELDAIA 265


>gi|78224405|ref|YP_386152.1| Lon-A peptidase [Geobacter metallireducens GS-15]
 gi|123570864|sp|Q39QP7|LON_GEOMG RecName: Full=Lon protease; AltName: Full=ATP-dependent protease La
 gi|78195660|gb|ABB33427.1| ATP-dependent proteinase, Serine peptidase, MEROPS family S16
           [Geobacter metallireducens GS-15]
          Length = 823

 Score = 43.9 bits (102), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 80/177 (45%), Gaps = 33/177 (18%)

Query: 43  FIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA------- 93
           F+   K R +    +L FVGPPG+GKT+L + +AR +G  F R + G V  +A       
Sbjct: 350 FLAVRKLRKKMKGPILCFVGPPGVGKTSLGKSIARAMGRKFVRISLGGVRDEAEIRGHRR 409

Query: 94  ---GDLAA-LLTNLE----DRDVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLM 137
              G L   ++  L+    +  V  +DE+ +L        S  + E+L P       D  
Sbjct: 410 TYVGALPGRIIQGLKQAGSNNPVFMLDELDKLGADFRGDPSSALLEVLDPEQNHMFSDHY 469

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           +       ++  NLS    IA   ++  +  PL+DR  + I+L+ Y  E+   I +R
Sbjct: 470 I-------NLPFNLSNVMFIATANQIDTVPGPLRDRMEV-IQLSGYTEEEKLEIAKR 518


>gi|11499681|ref|NP_070923.1| cell division protein CDC48 [Archaeoglobus fulgidus DSM 4304]
 gi|2648442|gb|AAB89157.1| cell division control protein 48, AAA family (cdc48-2)
           [Archaeoglobus fulgidus DSM 4304]
          Length = 811

 Score = 43.9 bits (102), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 8/76 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DV 108
           VL  GPPG GKT +A+ VA E+G +F + +GP I     G+    L  + +        +
Sbjct: 234 VLLYGPPGTGKTLIAKAVANEIGASFFTINGPEIMSKFYGESEQRLREIFEEAKENAPSI 293

Query: 109 LFIDEIHRLSIIVEEI 124
           +FIDEI  ++   EE+
Sbjct: 294 IFIDEIDSIAPKREEV 309



 Score = 36.6 bits (83), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 19/31 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT +A+ VA E   NF S  G
Sbjct: 571 VLLYGPPGTGKTLIAKAVANESEANFISIKG 601


>gi|327404287|ref|YP_004345125.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Fluviicola
           taffensis DSM 16823]
 gi|327319795|gb|AEA44287.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Fluviicola
           taffensis DSM 16823]
          Length = 406

 Score = 43.9 bits (102), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 63/138 (45%), Gaps = 28/138 (20%)

Query: 9   SRNVSQEDADISLLRPRTLEE-----FTGQVEACSNLKVFIEAAKARAEAL--------- 54
           S  VS E A +++L+P+ ++E       GQ +A   L V +     R             
Sbjct: 46  STKVSSESAPVNVLKPQDIKERLDEYVIGQDDAKKTLSVAVYNHYKRLHQTKIEDVEIEK 105

Query: 55  DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL------- 103
            +V+ VG  G GKT LA+ +A+ L V F      V+ +AG    D+ ++L+ L       
Sbjct: 106 SNVILVGRTGTGKTLLAKTIAKMLNVPFCIADATVLTEAGYVGEDVESILSRLLQAADYN 165

Query: 104 ---EDRDVLFIDEIHRLS 118
                  ++FIDEI +++
Sbjct: 166 VQAAQHGIVFIDEIDKIA 183


>gi|325270324|ref|ZP_08136929.1| ATP-dependent metalloprotease FtsH [Prevotella multiformis DSM
           16608]
 gi|324987268|gb|EGC19246.1| ATP-dependent metalloprotease FtsH [Prevotella multiformis DSM
           16608]
          Length = 676

 Score = 43.9 bits (102), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 109/261 (41%), Gaps = 45/261 (17%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ  A   ++  +E  K   +  D         L +GPPG GKT LA+ VA E 
Sbjct: 190 TFKDVAGQTGAKQEVQEIVEFLKNPKKYTDLGGKIPKGALLIGPPGTGKTLLAKAVAGEA 249

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG       V   A  +  +    +++   ++FIDEI  +     +   PAM 
Sbjct: 250 GVPFFSMSGSDFVEMFVGVGASRVRDVFRQAKEKAPCIIFIDEIDAVGRARSK--NPAM- 306

Query: 131 DFQLDLMVGEGPSARSVKINL-----------SRFTLIAATTRVGLLTNPL--QDRFGIP 177
                     G   R   +N            S   ++AAT RV +L   L    RF   
Sbjct: 307 ---------GGNDERENTLNALLTEMDGFGTNSGVIVLAATNRVDMLDKALLRAGRFDRQ 357

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
           I ++  ++ + K I Q   +   L    E   +I + +R TP  +G  +  V + A +  
Sbjct: 358 IHVDLPDLTERKAIFQVHMRPLKL----ERNLDIDLLARQTPGFSGADIANVCNEAALIA 413

Query: 238 AKTITREIADAALLRLAIDKM 258
           A+  +++++    L  A+D++
Sbjct: 414 ARHDSKDVSKQDFLD-AVDRI 433


>gi|116754010|ref|YP_843128.1| ATPase central domain-containing protein [Methanosaeta thermophila
           PT]
 gi|116665461|gb|ABK14488.1| AAA ATPase, central domain protein [Methanosaeta thermophila PT]
          Length = 385

 Score = 43.9 bits (102), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 100/214 (46%), Gaps = 25/214 (11%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFI----EAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +++ P + ++  GQ++A   +KV      E  +  + A  ++LF G  G GKT +A+ +A
Sbjct: 130 AVVEPASFDDVVGQLDAKRKVKVIKRYLEEPERFGSWAPRNILFYGASGTGKTMIARALA 189

Query: 76  RELGVNF---RSTSGPVIAK-AGDLAALLTNLEDRD------VLFIDEIHRLSII--VEE 123
            E  V+    +STS  +I +  G+ A  + +L DR       ++FIDEI  +++    ++
Sbjct: 190 TEANVSMMPVKSTS--LIGEFVGEGARQIHSLYDRAEQLSPCIIFIDEIDAIALDRRYQD 247

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +     E     L   +G S+R           IAAT ++ LL   ++ RF   I     
Sbjct: 248 LRGDVSEIVNALLTEMDGISSR------RGVCTIAATNKIELLDPSIRSRFEEEIEFKLP 301

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRG 217
             ED   I++R A    L V  + A EIA  + G
Sbjct: 302 SHEDRLEILRRNASKMPLEVRGDLA-EIAKLTEG 334


>gi|157876732|ref|XP_001686709.1| Transitional endoplasmic reticulum ATPase; valosin-containing
           protein homolog [Leishmania major
 gi|68129784|emb|CAJ09090.1| putative Transitional endoplasmic reticulum ATPase [Leishmania
           major strain Friedlin]
          Length = 784

 Score = 43.9 bits (102), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 504 VLFYGPPGCGKTLLAKAIATECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCV 563

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 564 LFFDELDSVA 573



 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 231 ILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNAPSI 290

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 291 IFIDEIDSIA 300


>gi|33086608|gb|AAP92616.1| Ab2-088 [Rattus norvegicus]
          Length = 559

 Score = 43.9 bits (102), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 17/117 (14%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-----RSTSGPVIAKAGDLAALLTNLEDR---DV 108
           VL  GPPG GKT +A+  A+E G  F      + +     ++  LAA + +L  +    +
Sbjct: 309 VLLYGPPGCGKTLIAKATAKEAGCRFINLQPSTLTDKWYGESQKLAAAVFSLAIKLQPSI 368

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
           +FIDEI +   I  EI Y        DL V   P A+   ++     LI   T+V L
Sbjct: 369 IFIDEIAKARFIT-EIYYG-------DLRVDTHP-AQETDVSTKHCFLIVKITKVKL 416


>gi|20093447|ref|NP_613294.1| DNA helicase TIP49, TBP-interacting protein [Methanopyrus kandleri
           AV19]
 gi|19886266|gb|AAM01224.1| DNA helicase TIP49, TBP-interacting protein [Methanopyrus kandleri
           AV19]
          Length = 455

 Score = 43.9 bits (102), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 66/155 (42%), Gaps = 27/155 (17%)

Query: 30  FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG--VNFRSTSG 87
             GQ EA     + +E  K    A   +L VGPPG GKT +A  +ARELG  V F S SG
Sbjct: 41  LVGQEEAREAAGIVVEMVKQGRRAGHGLLLVGPPGTGKTAIAYGIARELGEDVPFVSISG 100

Query: 88  PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE-----EILYPAMEDFQLDLMVGEGP 142
             I          TNL   +  F+ +  R +I VE     E++   +E  +++       
Sbjct: 101 SEIYG--------TNLSKTE--FLQQAIRRAIGVEFTETREVIEGKVESLEIE------- 143

Query: 143 SARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
                K  LS +  + +   + L T     RF +P
Sbjct: 144 ---RAKHPLSPYMEVPSGAIIELKTQDDHRRFKVP 175


>gi|15669613|ref|NP_248426.1| replication factor C small subunit [Methanocaldococcus jannaschii
           DSM 2661]
 gi|42559435|sp|Q58817|RFCS_METJA RecName: Full=Replication factor C small subunit; Short=RFC small
           subunit; AltName: Full=Clamp loader small subunit;
           Contains: RecName: Full=Mja RFC-1 intein; Contains:
           RecName: Full=Mja RFC-2 intein; Contains: RecName:
           Full=Mja RFC-3 intein
 gi|1592072|gb|AAB99433.1| activator 1 (replication factor C), 35 KD subunit
           [Methanocaldococcus jannaschii DSM 2661]
          Length = 1847

 Score = 43.9 bits (102), Expect = 0.031,   Method: Composition-based stats.
 Identities = 34/97 (35%), Positives = 48/97 (49%), Gaps = 19/97 (19%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK--TTLAQVVA----R 76
           RP+TL++  GQ E    LK ++E      +++ H+LF GPPG+GK  T   +V+     R
Sbjct: 14  RPKTLDDIVGQDEIVKRLKKYVEK-----KSMPHLLFSGPPGVGKCLTGDTKVIVNGEIR 68

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDE 113
           E+G      S       G     LTN  +  VL IDE
Sbjct: 69  EIGEVIEEISN------GKFGVTLTN--NLKVLGIDE 97


>gi|330993252|ref|ZP_08317188.1| Replication-associated recombination protein A [Gluconacetobacter
           sp. SXCC-1]
 gi|329759654|gb|EGG76162.1| Replication-associated recombination protein A [Gluconacetobacter
           sp. SXCC-1]
          Length = 463

 Score = 43.9 bits (102), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 72/148 (48%), Gaps = 19/148 (12%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP TL++  GQ   +    +L+  +    AR  +L  ++  G PG+GKTT+A+++A   
Sbjct: 50  LRPATLDDVVGQDHLLGPQGSLRQML----ARG-SLASLILWGGPGVGKTTIARLLADAA 104

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAMEDF 132
           G+ F   S  V +   DL     +           +LF+DEIHR +   ++   P +ED 
Sbjct: 105 GLRFVQLSA-VFSGVADLKRAFEDARRTSAQGGGTLLFVDEIHRFNRAQQDGFLPVVEDG 163

Query: 133 QLDLMVGEGPSARSVKIN---LSRFTLI 157
            + ++VG      S  +N   LSR  ++
Sbjct: 164 TV-VLVGATTENPSFALNSALLSRCQVL 190


>gi|328767174|gb|EGF77225.1| hypothetical protein BATDEDRAFT_37479 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 828

 Score = 43.9 bits (102), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 527 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCV 586

Query: 109 LFIDEIHRLS 118
           +F DE+  ++
Sbjct: 587 MFFDELDSIA 596



 Score = 37.7 bits (86), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 254 ILMFGPPGTGKTLVARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 313

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 314 IFIDEI 319


>gi|294893598|ref|XP_002774552.1| cell division cycle protein, putative [Perkinsus marinus ATCC
           50983]
 gi|239879945|gb|EER06368.1| cell division cycle protein, putative [Perkinsus marinus ATCC
           50983]
          Length = 808

 Score = 43.9 bits (102), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT +A+ VA E   NF S  GP
Sbjct: 521 VLFYGPPGCGKTMMAKAVASECSANFISIKGP 552



 Score = 38.9 bits (89), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTN-LEDRD-----V 108
           VL  GPPG GKT +A+ +A E G  F   +GP V++K AG+  + L    E+ +     +
Sbjct: 248 VLLYGPPGCGKTLIARAIANETGAFFFLINGPEVMSKMAGEAESNLRKAFEEAEKNAPAI 307

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 308 IFIDEIDSIA 317


>gi|242796075|ref|XP_002482723.1| metalloprotease m41 ftsh, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218719311|gb|EED18731.1| metalloprotease m41 ftsh, putative [Talaromyces stipitatus ATCC
           10500]
          Length = 475

 Score = 43.9 bits (102), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 33/57 (57%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEI 114
           LF GPPG GK++L+  +A E G++      P +A   DL  +  ++  R V+ +++I
Sbjct: 254 LFYGPPGTGKSSLSLAIAGEFGLDLYEVKIPSVATDADLEQMFQDIPPRCVVLLEDI 310


>gi|198428540|ref|XP_002121499.1| PREDICTED: similar to valosin containing protein [Ciona
           intestinalis]
          Length = 808

 Score = 43.9 bits (102), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ +A E   NF S  GP
Sbjct: 515 VLFYGPPGCGKTLLAKAIANECQANFISIKGP 546



 Score = 37.0 bits (84), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT +A+ VA E G  F   +GP I
Sbjct: 242 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 275


>gi|170033703|ref|XP_001844716.1| cell division protease ftsH [Culex quinquefasciatus]
 gi|167874684|gb|EDS38067.1| cell division protease ftsH [Culex quinquefasciatus]
          Length = 757

 Score = 43.9 bits (102), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 42/112 (37%), Positives = 53/112 (47%), Gaps = 19/112 (16%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTL 70
           DIS+    T E+  G  EA   LK  +E  K   +  +        VL VGPPG GKT L
Sbjct: 309 DISV----TFEDVKGCDEAKQELKEVVEFLKNPDKFSNLGGKLPKGVLLVGPPGTGKTLL 364

Query: 71  AQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEI 114
           A+ VA E GV F   +GP      V   A  +  L    ++R   V+FIDEI
Sbjct: 365 ARAVAGEAGVPFFHAAGPEFDEVLVGQGARRVRDLFKAAKERAPCVIFIDEI 416


>gi|229582086|ref|YP_002840485.1| replication factor C small subunit [Sulfolobus islandicus
          Y.N.15.51]
 gi|228012802|gb|ACP48563.1| Replication factor C [Sulfolobus islandicus Y.N.15.51]
          Length = 330

 Score = 43.9 bits (102), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 6/61 (9%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81
          RPRTL++   Q E    LK F+     + + + H+LF GP G GKTT A  +  +L G N
Sbjct: 15 RPRTLDDIVNQREIIDRLKKFV-----KEKNMPHLLFAGPSGTGKTTAALALVHDLYGDN 69

Query: 82 F 82
          +
Sbjct: 70 Y 70


>gi|146163969|ref|XP_001012750.2| ATPase, AAA family protein [Tetrahymena thermophila]
 gi|146145857|gb|EAR92505.2| ATPase, AAA family protein [Tetrahymena thermophila SB210]
          Length = 719

 Score = 43.9 bits (102), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 77/176 (43%), Gaps = 20/176 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-----VIAKAGDLAALLTNLEDR---DV 108
           +L  GPPG GKT + + +A + G  F S S        I +   +  +L  L +     V
Sbjct: 471 LLLFGPPGTGKTMIGKAIANQSGSTFFSISASSLTSKYIGEGEKMVKILFKLAEMRQPSV 530

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVG-EGPSARSVKINLSRFTLIAATTRVGLLT 167
           +FIDEI  L    +E    A    + + +V  EG ++R       R  LI AT R   L 
Sbjct: 531 IFIDEIDSLLCARQENENEASRRIKTEFLVQMEGATSREE----VRLLLIGATNRPQELD 586

Query: 168 NPLQDRF----GIPIRLNFYEIEDL--KTIVQRGAKLTGLAVTDEAACEIAMRSRG 217
           + ++ RF     IP+  N    E L  + I +  AK     ++D+   E+   ++G
Sbjct: 587 DAVRRRFVKKLYIPL-PNMVAREQLIRRVIERESAKGNAFDMSDQDILEVVQATKG 641


>gi|20093924|ref|NP_613771.1| ATPase of the AAA+ class [Methanopyrus kandleri AV19]
 gi|19886871|gb|AAM01701.1| ATPase of the AAA+ class [Methanopyrus kandleri AV19]
          Length = 1249

 Score = 43.9 bits (102), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 20/34 (58%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL  GPPG GKT LA+ VA E G  F S +GP I
Sbjct: 252 VLLYGPPGTGKTLLAKAVANECGAKFYSINGPEI 285



 Score = 39.3 bits (90), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT LA+ VA E   NF +  GP +
Sbjct: 594 ILLYGPPGTGKTLLAKAVANESDANFIAVRGPEV 627


>gi|332830358|gb|EGK02986.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Dysgonomonas
           gadei ATCC BAA-286]
          Length = 411

 Score = 43.9 bits (102), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           +++ VGP G GKT LA+ +A+ L V F      V+ +AG    D+ ++LT L        
Sbjct: 110 NIILVGPTGTGKTLLARTIAKMLHVPFAIVDATVLTEAGYVGEDIESILTRLLQASDYDV 169

Query: 104 --EDRDVLFIDEIHRLS 118
              +R ++FIDEI +++
Sbjct: 170 ASAERGIVFIDEIDKIA 186


>gi|295692957|ref|YP_003601567.1| atpase, aaa family [Lactobacillus crispatus ST1]
 gi|295031063|emb|CBL50542.1| ATPase, AAA family [Lactobacillus crispatus ST1]
          Length = 98

 Score = 43.9 bits (102), Expect = 0.032,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 2/72 (2%)

Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
          +RP+TL +  GQ E     K      K        +L  GPPG GKT+LAQ++A+E    
Sbjct: 11 MRPQTLADMVGQSELLGPGKALRNIIKQHVNI--SLLLWGPPGTGKTSLAQIIAKENDYP 68

Query: 82 FRSTSGPVIAKA 93
          F S +  +  KA
Sbjct: 69 FASFNASIDNKA 80


>gi|291515534|emb|CBK64744.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Alistipes
           shahii WAL 8301]
          Length = 422

 Score = 43.9 bits (102), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 29/127 (22%)

Query: 21  LLRPRTLEEFTGQ-------------VEACSNLKVFIEAAKARAEALD--HVLFVGPPGL 65
           LL+P  ++EF  Q             V   ++ K  + A K     +D  +++ VGP G 
Sbjct: 72  LLKPAQIKEFLDQYVIGQDAAKRYMSVAVYNHYKRLLYAPKEDEVEIDKSNIVLVGPTGT 131

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL----------EDRDVLFI 111
           GKT +A+ +A+ L V F      V+ +AG    D+ ++L+ L           +R ++FI
Sbjct: 132 GKTLMARTIAKLLKVPFTIVDATVLTEAGYVGEDVESILSRLLQVADYNVEQAERGIVFI 191

Query: 112 DEIHRLS 118
           DEI +++
Sbjct: 192 DEIDKIA 198


>gi|169848944|ref|XP_001831176.1| valosin-containing protein [Coprinopsis cinerea okayama7#130]
 gi|116507744|gb|EAU90639.1| valosin-containing protein [Coprinopsis cinerea okayama7#130]
          Length = 816

 Score = 43.9 bits (102), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 518 VLFYGPPGTGKTLLAKAIANECNANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCV 577

Query: 109 LFIDEIHRLS 118
           +F DE+  ++
Sbjct: 578 MFFDELDSIA 587



 Score = 38.1 bits (87), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 245 ILMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 304

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 305 IFIDEIDSIA 314


>gi|147920791|ref|YP_685403.1| putative cell division cycle protein 48 [uncultured methanogenic
           archaeon RC-I]
 gi|110620799|emb|CAJ36077.1| putative cell division cycle protein 48 [uncultured methanogenic
           archaeon RC-I]
          Length = 942

 Score = 43.9 bits (102), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 38/76 (50%), Gaps = 8/76 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLEDR--DV 108
           VL  GPPG GKT +A+ VA E   +F + SGP I           L  +    ED    +
Sbjct: 219 VLLFGPPGTGKTMIAKAVASETDAHFINISGPEIMSKYYGESEKQLRDIFKEAEDNAPSI 278

Query: 109 LFIDEIHRLSIIVEEI 124
           +FIDEI  ++   EE+
Sbjct: 279 IFIDEIDSIAPKREEV 294



 Score = 39.7 bits (91), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           ++  GPPG GKT LA+ VA E   NF S  GP I
Sbjct: 677 IMMFGPPGTGKTLLAKAVANESEANFISIKGPEI 710


>gi|268611240|ref|ZP_06144967.1| ATP-dependent protease ATP-binding subunit ClpX [Ruminococcus
           flavefaciens FD-1]
          Length = 435

 Score = 43.9 bits (102), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 65/140 (46%), Gaps = 34/140 (24%)

Query: 13  SQEDADIS---LLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEALD--------- 55
           S++  DIS   LL+P  ++E+      GQ EA  +L V +     R  A +         
Sbjct: 56  SEKTTDISKLKLLKPVEIKEYLDEYVIGQDEAKKSLAVAVYNHYKRITAQEQKDEDGIDL 115

Query: 56  ---HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
              +VL +GP G+GKT LAQ +A+ L V F       I +AG +   + N+         
Sbjct: 116 QKSNVLLLGPTGVGKTFLAQTLAKLLNVPFAIADATTITEAGYVGDDVENVLLRLIQAAD 175

Query: 104 -----EDRDVLFIDEIHRLS 118
                 ++ +++IDEI +++
Sbjct: 176 YDIKAAEKGIIYIDEIDKIA 195


>gi|260221544|emb|CBA30215.1| hypothetical protein Csp_C22430 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 733

 Score = 43.9 bits (102), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 59/252 (23%), Positives = 101/252 (40%), Gaps = 37/252 (14%)

Query: 27  LEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF---- 82
           LE+F    E    L   ++ A AR EA  ++L  GPPG GKT LA+V+A+ +G+      
Sbjct: 275 LEDFAFVAEDAHMLCRLLQHAVARKEAGVNILLYGPPGTGKTELAKVIAQHVGLELFEVE 334

Query: 83  ------RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED---FQ 133
                  S SG    ++  +A +      +  L  DE       VE++  P   +   F 
Sbjct: 335 YADRDGNSLSGRDRYRSLQIAQVFLKGSAQAALLFDE-------VEDVFPPLTSETASFI 387

Query: 134 LDLMVGEGPSARSVK--------INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
                   P+  SV         +  +    I  T R+  +    + RF   + L     
Sbjct: 388 ARADAHATPANASVSGKAWVNQILESNAVPTIWVTNRIEQIDPAFRRRFAYHLELKSPPP 447

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
              + +V++   L G++V++     ++ R   TP        ++R  A  A   T    +
Sbjct: 448 GAREGVVRK--TLEGISVSEAFVARLSGRKGLTP-------AQIRTAARFARLSTPENGV 498

Query: 246 ADAALLRLAIDK 257
           +D+AL+   ID+
Sbjct: 499 SDSALMETLIDR 510


>gi|212536558|ref|XP_002148435.1| mitochondrial chaperone bcs1, putative [Penicillium marneffei ATCC
           18224]
 gi|210070834|gb|EEA24924.1| mitochondrial chaperone bcs1, putative [Penicillium marneffei ATCC
           18224]
          Length = 486

 Score = 43.9 bits (102), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 33/57 (57%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEI 114
           LF GPPG GK++L+  +A E G++      P +A   DL  +  ++  R V+ +++I
Sbjct: 266 LFYGPPGTGKSSLSLAIAGEFGLDLYEVKIPSVATDADLEQMFQDIPPRCVVLLEDI 322


>gi|168187300|ref|ZP_02621935.1| ATP-dependent protease, Lon family [Clostridium botulinum C str.
           Eklund]
 gi|169294755|gb|EDS76888.1| ATP-dependent protease, Lon family [Clostridium botulinum C str.
           Eklund]
          Length = 635

 Score = 43.9 bits (102), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 84/227 (37%), Gaps = 54/227 (23%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +S+LRP++  E  GQ     +L      +K  +    H++  GPPG+GKTT A++   E+
Sbjct: 166 LSMLRPKSFSEIVGQERPIKSL-----ISKLASPYPQHIILYGPPGVGKTTAARLALEEV 220

Query: 79  ------------------GVNFR------------STSGPVIAKAG-DLAAL-------- 99
                             G   R            S   P+   +  DLA +        
Sbjct: 221 KKLKHTPFGESAKFVEVDGTTLRWDPREIANPLLGSVHDPIYQGSKRDLAEVGVPEPKPG 280

Query: 100 LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG-EGPSARSVKINL------- 151
           L       VLFIDEI  L  I++  L   +ED +++       P   ++   +       
Sbjct: 281 LVTEAHGGVLFIDEIGELDTILQNKLLKVLEDKRVEFSSSYYDPDDENIPKYIKYLFEHG 340

Query: 152 --SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA 196
             + F LI ATTR     NP        +        D+K IV+  A
Sbjct: 341 APADFVLIGATTREPRDINPALRSRCTEVYFEPLSANDIKNIVENAA 387


>gi|126459231|ref|YP_001055509.1| TBP-interacting protein TIP49 [Pyrobaculum calidifontis JCM
          11548]
 gi|126248952|gb|ABO08043.1| TBP-interacting protein TIP49 [Pyrobaculum calidifontis JCM
          11548]
          Length = 450

 Score = 43.9 bits (102), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 36/65 (55%), Gaps = 5/65 (7%)

Query: 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPV 89
          F GQVEA     + ++  +    A   VL VGPPG GKT LA  +ARELG   R T  P 
Sbjct: 38 FVGQVEAREAAYIVVKMIREGKFAGKGVLIVGPPGTGKTALALGIARELG---RET--PF 92

Query: 90 IAKAG 94
          +A +G
Sbjct: 93 VALSG 97


>gi|51893691|ref|YP_076382.1| methanol dehydrogenase regulatory protein [Symbiobacterium
           thermophilum IAM 14863]
 gi|51857380|dbj|BAD41538.1| methanol dehydrogenase regulatory protein [Symbiobacterium
           thermophilum IAM 14863]
          Length = 319

 Score = 43.9 bits (102), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 69/166 (41%), Gaps = 38/166 (22%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTS-GPVIAKAGDLAALLTNLEDRD------- 107
           HVL    PG+GKTTL + +AR LG  FR     P +  +      + N +  +       
Sbjct: 37  HVLIEDVPGVGKTTLVRSLARSLGCEFRRIQFTPDLLPSDVTGVSIYNQKTGEFEFRPGP 96

Query: 108 ----VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
               ++  DEI+R S   +  L   ME+ QL        +   V   L R  L+ AT   
Sbjct: 97  IMAQIILADEINRTSPKTQSALLECMEEGQL--------TVDGVTRRLPRPFLVLAT--- 145

Query: 164 GLLTNPLQ------------DRFGIPIRLNFYEIEDLKTIVQRGAK 197
               NP++            DRF + +RL +  + D  T+V+R  +
Sbjct: 146 ---QNPIEYEGTFPLPEAQLDRFLLKLRLGYPSLRDEMTVVERSRR 188


>gi|330507349|ref|YP_004383777.1| AAA family ATPase [Methanosaeta concilii GP-6]
 gi|328928157|gb|AEB67959.1| AAA family ATPase, CDC48 subfamily [Methanosaeta concilii GP-6]
          Length = 737

 Score = 43.9 bits (102), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DV 108
           VL  GPPG GKT +A+ VA E G NF S +GP I     G+    L  + +        +
Sbjct: 229 VLLYGPPGTGKTLIAKAVANESGANFISIAGPEIMSKYYGESEQRLREIFEEAQKSAPSI 288

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 289 IFIDEIDSIA 298



 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT +AQ VA E   NF S  GP
Sbjct: 501 ILLYGPPGTGKTMIAQAVANETNANFISIRGP 532


>gi|242004160|ref|XP_002422998.1| protein MSP1, putative [Pediculus humanus corporis]
 gi|212505914|gb|EEB10260.1| protein MSP1, putative [Pediculus humanus corporis]
          Length = 176

 Score = 43.9 bits (102), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 3/61 (4%)

Query: 57  VLFVGPPGLGKTTLAQVVAREL-GVNFRSTSGPVIA--KAGDLAALLTNLEDRDVLFIDE 113
           +LF GPPG GKT LAQ +A E+  + +R +S  V++  +  +L   L  +    +LF DE
Sbjct: 47  ILFYGPPGTGKTMLAQAIANEMRALLYRVSSADVLSHWQGENLFRELKTMSKTTILFFDE 106

Query: 114 I 114
           I
Sbjct: 107 I 107


>gi|295696093|ref|YP_003589331.1| ATP-dependent metalloprotease FtsH [Bacillus tusciae DSM 2912]
 gi|295411695|gb|ADG06187.1| ATP-dependent metalloprotease FtsH [Bacillus tusciae DSM 2912]
          Length = 536

 Score = 43.9 bits (102), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 98/221 (44%), Gaps = 24/221 (10%)

Query: 51  AEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDR-- 106
           AE    V+  GPPG GKT LA+ VA E GV F + SG   V    G  A  + +L D+  
Sbjct: 137 AEMPKGVILYGPPGTGKTLLARAVAGEAGVEFVACSGSQFVEQYVGLGAKKIRDLFDQVR 196

Query: 107 -----DVLFIDEIHRLSIIVEEILYPAMEDFQLD--LMVGEGPSARSVKINLSRFTLIAA 159
                 ++F DE+  L     E       D  L+  L+  +G   R   I      ++ A
Sbjct: 197 RIGRPAIIFFDELDALGRRRGETGSSQEWDQTLNELLVQLDGFHGRQDII------VMGA 250

Query: 160 TTRVGLLTNPL--QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRG 217
           T R+ +L   L    RF   IR++   IE  + I++  A+   +      A +    +R 
Sbjct: 251 TNRLDILDPALLRPGRFDRHIRVDLPSIEGREKILRLHARNKPI----HPAVDFRSLARR 306

Query: 218 TPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKM 258
           TP  +G +L+ + + A +   K   R+I +A     AID++
Sbjct: 307 TPGFSGAMLKHLCNEAAIIAVKEEARQI-EARHFSQAIDRV 346


>gi|296135939|ref|YP_003643181.1| ATP-dependent metalloprotease FtsH [Thiomonas intermedia K12]
 gi|295796061|gb|ADG30851.1| ATP-dependent metalloprotease FtsH [Thiomonas intermedia K12]
          Length = 629

 Score = 43.9 bits (102), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 48/91 (52%), Gaps = 8/91 (8%)

Query: 35  EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK-- 92
           E    LK   E ++  A A   VL VGPPG+GKT LA+ VA E GV F S SG    +  
Sbjct: 192 EVVDFLKNPGEHSRLGARAPKGVLLVGPPGVGKTLLARAVAGEAGVPFFSISGSEFVEMF 251

Query: 93  AGDLAALLTNLEDR------DVLFIDEIHRL 117
            G  AA + +L ++       ++FIDE+  L
Sbjct: 252 VGVGAARVRDLFEQAREKSPAIIFIDELDAL 282


>gi|221052024|ref|XP_002257588.1| cell division cycle ATPase [Plasmodium knowlesi strain H]
 gi|193807418|emb|CAQ37924.1| cell division cycle ATPase, putative [Plasmodium knowlesi strain H]
          Length = 1132

 Score = 43.9 bits (102), Expect = 0.033,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           +L  GPPG GKT LA+ +A E   NF S  GP +     G+  A + +L D+       +
Sbjct: 880 ILLYGPPGCGKTLLAKAIANECNANFISVKGPELLTMWFGESEANVRDLFDKARAASPCI 939

Query: 109 LFIDEIHRLS 118
           +F DEI  L+
Sbjct: 940 IFFDEIDSLA 949


>gi|118371283|ref|XP_001018841.1| ATPase, AAA family protein [Tetrahymena thermophila]
 gi|89300608|gb|EAR98596.1| ATPase, AAA family protein [Tetrahymena thermophila SB210]
          Length = 828

 Score = 43.9 bits (102), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 28/48 (58%), Gaps = 4/48 (8%)

Query: 41  KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +VF E  + R      +LF GPPG GKT LA+ +A E  +NF S  GP
Sbjct: 554 QVFDEFVRPRT----GLLFFGPPGTGKTLLAKCIATETKMNFLSVKGP 597


>gi|28209972|ref|NP_780916.1| cell division protein ftsH [Clostridium tetani E88]
 gi|28202407|gb|AAO34853.1| cell division protein ftsH [Clostridium tetani E88]
          Length = 603

 Score = 43.9 bits (102), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 38/66 (57%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLED------RDV 108
           VL VGPPG GKT LA+ +A E GV F S SG    +   G  A+ + +L D      R +
Sbjct: 197 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFDQAKKNSRCI 256

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 257 IFIDEI 262


>gi|322490717|emb|CBZ25980.1| Transitional endoplasmic reticulum ATPase,putative [Leishmania
           mexicana MHOM/GT/2001/U1103]
          Length = 785

 Score = 43.9 bits (102), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 504 VLFYGPPGCGKTLLAKAIATECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCV 563

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 564 LFFDELDSVA 573



 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 231 ILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNAPAI 290

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 291 IFIDEIDSIA 300


>gi|309804815|ref|ZP_07698879.1| ATPase, AAA family [Lactobacillus iners LactinV 09V1-c]
 gi|309809896|ref|ZP_07703744.1| ATPase, AAA family [Lactobacillus iners SPIN 2503V10-D]
 gi|312871594|ref|ZP_07731686.1| ATPase, AAA family [Lactobacillus iners LEAF 3008A-a]
 gi|312873237|ref|ZP_07733293.1| ATPase, AAA family [Lactobacillus iners LEAF 2052A-d]
 gi|312874638|ref|ZP_07734662.1| ATPase, AAA family [Lactobacillus iners LEAF 2053A-b]
 gi|325913012|ref|ZP_08175385.1| ATPase, AAA family [Lactobacillus iners UPII 60-B]
 gi|329921095|ref|ZP_08277618.1| ATPase, AAA family [Lactobacillus iners SPIN 1401G]
 gi|308165925|gb|EFO68144.1| ATPase, AAA family [Lactobacillus iners LactinV 09V1-c]
 gi|308169684|gb|EFO71729.1| ATPase, AAA family [Lactobacillus iners SPIN 2503V10-D]
 gi|311089868|gb|EFQ48288.1| ATPase, AAA family [Lactobacillus iners LEAF 2053A-b]
 gi|311091248|gb|EFQ49636.1| ATPase, AAA family [Lactobacillus iners LEAF 2052A-d]
 gi|311092819|gb|EFQ51171.1| ATPase, AAA family [Lactobacillus iners LEAF 3008A-a]
 gi|325477692|gb|EGC80831.1| ATPase, AAA family [Lactobacillus iners UPII 60-B]
 gi|328935002|gb|EGG31491.1| ATPase, AAA family [Lactobacillus iners SPIN 1401G]
          Length = 445

 Score = 43.9 bits (102), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 17/124 (13%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP +L +  GQ       K+     +A+   L  ++  G PG+GKT++A  +A      
Sbjct: 18  MRPHSLTDVVGQQHLIGPGKIITRMVEAKL--LSSMILYGQPGIGKTSIATAIAGATKYA 75

Query: 82  FRSTSGP--------VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           FR  +          ++A+ G ++  +       +L +DEI RL    ++ L P +E  Q
Sbjct: 76  FRKLNAATDSKKDLQIVAEEGKMSGTV-------ILLLDEIQRLDKSKQDFLLPLLESGQ 128

Query: 134 LDLM 137
           + L+
Sbjct: 129 IILI 132


>gi|259501667|ref|ZP_05744569.1| AAA family ATPase [Lactobacillus iners DSM 13335]
 gi|259166952|gb|EEW51447.1| AAA family ATPase [Lactobacillus iners DSM 13335]
          Length = 439

 Score = 43.9 bits (102), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 17/124 (13%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP +L +  GQ       K+     +A+   L  ++  G PG+GKT++A  +A      
Sbjct: 12  MRPHSLTDVVGQQHLIGPGKIITRMVEAKL--LSSMILYGQPGIGKTSIATAIAGATKYA 69

Query: 82  FRSTSGP--------VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           FR  +          ++A+ G ++  +       +L +DEI RL    ++ L P +E  Q
Sbjct: 70  FRKLNAATDSKKDLQIVAEEGKMSGTV-------ILLLDEIQRLDKSKQDFLLPLLESGQ 122

Query: 134 LDLM 137
           + L+
Sbjct: 123 IILI 126


>gi|294939027|ref|XP_002782298.1| cell division cycle protein 48, putative [Perkinsus marinus ATCC
           50983]
 gi|239893837|gb|EER14093.1| cell division cycle protein 48, putative [Perkinsus marinus ATCC
           50983]
          Length = 747

 Score = 43.9 bits (102), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT +A+ VA E   NF S  GP
Sbjct: 460 VLFYGPPGCGKTMMAKAVASECSANFISIKGP 491



 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTN-LEDRD-----V 108
           VL  GPPG GKT +A+ +A E G  F   +GP V++K AG+  + L    E+ +     +
Sbjct: 187 VLLYGPPGCGKTLIARAIANETGAFFFLINGPEVMSKMAGEAESNLRKAFEEAEKNAPAI 246

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 247 IFIDEIDSIA 256


>gi|154345666|ref|XP_001568770.1| Transitional endoplasmic reticulum ATPase [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134066112|emb|CAM43901.1| putative transitional endoplasmic reticulum ATPase [Leishmania
           braziliensis MHOM/BR/75/M2904]
          Length = 785

 Score = 43.9 bits (102), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 504 VLFYGPPGCGKTLLAKAIATECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCV 563

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 564 LFFDELDSVA 573



 Score = 38.1 bits (87), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 231 ILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAERNAPAI 290

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 291 IFIDEIDSIA 300


>gi|169854167|ref|XP_001833760.1| replication factor C [Coprinopsis cinerea okayama7#130]
 gi|116505157|gb|EAU88052.1| replication factor C [Coprinopsis cinerea okayama7#130]
          Length = 380

 Score = 43.9 bits (102), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 7/68 (10%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          +   RP+T+ E + Q    S L   + +A      L H+LF GPPG GKT+    +AREL
Sbjct: 32 VEKYRPKTINEISAQEHTTSVLSRTLTSAN-----LPHMLFYGPPGTGKTSTILALAREL 86

Query: 79 --GVNFRS 84
              NFR+
Sbjct: 87 FGPDNFRN 94


>gi|308799295|ref|XP_003074428.1| putative transitional endoplasmic reticulum ATPase (ISS)
           [Ostreococcus tauri]
 gi|116000599|emb|CAL50279.1| putative transitional endoplasmic reticulum ATPase (ISS)
           [Ostreococcus tauri]
          Length = 1228

 Score = 43.9 bits (102), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 554 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQSAPCV 613

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 614 LFFDELDSIA 623



 Score = 37.7 bits (86), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 281 ILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 340

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 341 IFIDEIDSIA 350


>gi|322815457|gb|EFZ24109.1| replication factor C, subunit 1, putative [Trypanosoma cruzi]
          Length = 582

 Score = 43.9 bits (102), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 1/58 (1%)

Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +P+T+ +      A + LK +IE   + +  +   L  GPPG+GKTT   VVARELG
Sbjct: 18 YKPKTIAQMCYPSSA-NKLKAWIETFDSGSSRMRAALLSGPPGVGKTTSVYVVARELG 74


>gi|332796204|ref|YP_004457704.1| DNA replication factor C, small subunit [Acidianus hospitalis W1]
 gi|332693939|gb|AEE93406.1| DNA replication factor C, small subunit [Acidianus hospitalis W1]
          Length = 326

 Score = 43.9 bits (102), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RPR+L++   Q +    LK F+     + + + H+LF GPPG GKTT A  +  +L
Sbjct: 12 RPRSLDDIVNQKDIVERLKRFV-----KEKNMPHLLFAGPPGTGKTTAALALVHDL 62


>gi|322503495|emb|CBZ38580.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 784

 Score = 43.9 bits (102), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 504 VLFYGPPGCGKTLLAKAIATECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCV 563

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 564 LFFDELDSVA 573



 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 231 ILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNAPAI 290

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 291 IFIDEIDSIA 300


>gi|320531031|ref|ZP_08032061.1| ATP-dependent protease, Lon family [Selenomonas artemidis F0399]
 gi|320136697|gb|EFW28649.1| ATP-dependent protease, Lon family [Selenomonas artemidis F0399]
          Length = 781

 Score = 43.9 bits (102), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 8/79 (10%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV---A 75
           + LLRP+  +E  GQ  A  +L      AK  +    H+L  GPPG+GKTT A++V   A
Sbjct: 171 MELLRPQNFDEIIGQERAVRSL-----MAKLSSPYPQHLLLYGPPGVGKTTAARLVLEAA 225

Query: 76  RELGVNFRSTSGPVIAKAG 94
           ++  V+    S P +   G
Sbjct: 226 KKRAVSPFGESAPFVETDG 244


>gi|281204296|gb|EFA78492.1| AAA ATPase domain-containing protein [Polysphondylium pallidum PN500]
          Length = 1293

 Score = 43.9 bits (102), Expect = 0.033,   Method: Composition-based stats.
 Identities = 18/32 (56%), Positives = 22/32 (68%)

Query: 57   VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
            +LF GPPG GKT LA+ +A E  +NF S  GP
Sbjct: 1029 ILFYGPPGTGKTLLAKAIATECSLNFLSVKGP 1060


>gi|289579225|ref|YP_003477852.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter italicus
           Ab9]
 gi|297545405|ref|YP_003677707.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|289528938|gb|ADD03290.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter italicus
           Ab9]
 gi|296843180|gb|ADH61696.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 611

 Score = 43.9 bits (102), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 50/104 (48%), Gaps = 15/104 (14%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  E    L+  +E  K   + LD        VL VGPPG GKT LA+ VA E 
Sbjct: 159 TFNDVAGADEEKEELQEIVEFLKYPKKFLDLGARIPKGVLLVGPPGTGKTLLAKAVAGEA 218

Query: 79  GVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEI 114
           GV F S SG    +   G  AA + +L ++       ++FIDEI
Sbjct: 219 GVPFFSISGSDFVEMFVGVGAARVRDLFEQAKKNAPCIVFIDEI 262


>gi|325968176|ref|YP_004244368.1| ATPase AAA [Vulcanisaeta moutnovskia 768-28]
 gi|323707379|gb|ADY00866.1| AAA ATPase central domain protein [Vulcanisaeta moutnovskia
          768-28]
          Length = 435

 Score = 43.9 bits (102), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 31/61 (50%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          I   RPR L E   Q EA   L  +I + +    +   V+ VG PG GKTTLA  +A E 
Sbjct: 8  IEKYRPRKLSEVVNQEEAKKALLDWINSWEKGKPSRKAVMLVGSPGTGKTTLAYALANEK 67

Query: 79 G 79
          G
Sbjct: 68 G 68


>gi|320164282|gb|EFW41181.1| valosin-containing protein [Capsaspora owczarzaki ATCC 30864]
          Length = 813

 Score = 43.9 bits (102), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ +A E   NF S  GP
Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQANFISIKGP 545



 Score = 37.4 bits (85), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 300

Query: 109 LFIDEIHRLS 118
           +FIDE+  ++
Sbjct: 301 IFIDELDSIA 310


>gi|307354036|ref|YP_003895087.1| AAA family ATPase [Methanoplanus petrolearius DSM 11571]
 gi|307157269|gb|ADN36649.1| AAA family ATPase, CDC48 subfamily [Methanoplanus petrolearius DSM
           11571]
          Length = 846

 Score = 43.9 bits (102), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGD----LAALLTNLEDR--DV 108
           VL  GPPG GKT +A+ VA E G +F S +GP VI+K  G+    L  +    ED    +
Sbjct: 219 VLLYGPPGTGKTLIAKAVANESGAHFISIAGPEVISKYYGESEQRLREIFDEAEDNAPSI 278

Query: 109 LFIDEIHRLS 118
           +FIDE+  ++
Sbjct: 279 IFIDELDSIA 288



 Score = 40.4 bits (93), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT +A+ VA E G NF    GP
Sbjct: 529 VLLYGPPGTGKTLIAKAVANESGANFIPVRGP 560


>gi|322435043|ref|YP_004217255.1| ATP-dependent protease La [Acidobacterium sp. MP5ACTX9]
 gi|321162770|gb|ADW68475.1| ATP-dependent protease La [Acidobacterium sp. MP5ACTX9]
          Length = 807

 Score = 43.9 bits (102), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 91/202 (45%), Gaps = 47/202 (23%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           + FVGPPG+GKT+L Q +A+  G  F R + G V  +A              G +   + 
Sbjct: 355 LCFVGPPGVGKTSLGQSIAKATGRKFVRMSLGGVRDEAEIRGHRRTYIGALPGQVIQSMK 414

Query: 102 NLEDRDVLF-IDEIHRL--------SIIVEEILYP----AMEDFQLDLMVGEGPSARSVK 148
               ++ +F +DEI ++        +  + E+L P      +D  LD           V+
Sbjct: 415 KAGTKNPVFMLDEIDKMASDFRGDPASALLEVLDPEQNNKFQDHYLD-----------VE 463

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY-EIEDL----KTIVQRGAKLTGLAV 203
            +LS+   +A    +  +  PLQDR  I IRL+ Y EIE L    + +V++  +  GL  
Sbjct: 464 YDLSQVLFVATANVLDTIPGPLQDRMEI-IRLSGYTEIEKLEIAKQYLVKKQREGNGLTE 522

Query: 204 TDEAACEIAMRS--RGTPRIAG 223
                 + A++S  RG  R AG
Sbjct: 523 EQIQFEDGALKSLIRGYTREAG 544


>gi|299469966|emb|CBN79143.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 831

 Score = 43.9 bits (102), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT +A+ VA E   NF S  GP
Sbjct: 534 VLFYGPPGCGKTLMAKAVANECQANFISVKGP 565


>gi|167379134|ref|XP_001735005.1| transitional endoplasmic reticulum ATPase [Entamoeba dispar SAW760]
 gi|165903136|gb|EDR28786.1| transitional endoplasmic reticulum ATPase, putative [Entamoeba
           dispar SAW760]
          Length = 781

 Score = 43.9 bits (102), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ VA +   NF S  GP  +    G+  A + ++ D+       V
Sbjct: 522 VLFFGPPGCGKTLLAKAVASQCKANFISIKGPELLTMWYGESEANVRDVFDKARQAAPCV 581

Query: 109 LFIDEI 114
           LF DE+
Sbjct: 582 LFFDEL 587



 Score = 38.9 bits (89), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLEDR--DV 108
           VL  GPPG GKT +A+ VA E GV     +GP I         G+L       E     +
Sbjct: 249 VLLYGPPGCGKTMIARAVANETGVFLILINGPEIMSKMAGESEGNLREAFAEAEKNAPAL 308

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 309 IFIDEIDSIA 318


>gi|71662470|ref|XP_818241.1| replication factor C, subunit 1 [Trypanosoma cruzi strain CL
          Brener]
 gi|70883481|gb|EAN96390.1| replication factor C, subunit 1, putative [Trypanosoma cruzi]
          Length = 582

 Score = 43.9 bits (102), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 1/58 (1%)

Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +P+T+ +      A + LK +IE   + +  +   L  GPPG+GKTT   VVARELG
Sbjct: 18 YKPKTIAQMCYPSSA-NKLKAWIETFDSGSSRMRAALLSGPPGVGKTTSVYVVARELG 74


>gi|313212248|emb|CBY36254.1| unnamed protein product [Oikopleura dioica]
 gi|313232801|emb|CBY09484.1| unnamed protein product [Oikopleura dioica]
          Length = 801

 Score = 43.9 bits (102), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ +A E   NF S  GP
Sbjct: 512 VLFYGPPGCGKTLLAKAIANECQANFISIKGP 543



 Score = 38.1 bits (87), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 239 ILLFGPPGTGKTLIARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNAPSI 298

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 299 IFIDEIDSIA 308


>gi|302191125|ref|ZP_07267379.1| recombination factor protein RarA [Lactobacillus iners AB-1]
 gi|309803241|ref|ZP_07697338.1| recombination factor protein RarA [Lactobacillus iners LactinV
           11V1-d]
 gi|309806317|ref|ZP_07700330.1| recombination factor protein RarA [Lactobacillus iners LactinV
           03V1-b]
 gi|309808533|ref|ZP_07702431.1| recombination factor protein RarA [Lactobacillus iners LactinV
           01V1-a]
 gi|312871951|ref|ZP_07732033.1| recombination factor protein RarA [Lactobacillus iners LEAF
           2062A-h1]
 gi|315653730|ref|ZP_07906650.1| AAA family ATPase [Lactobacillus iners ATCC 55195]
 gi|325911724|ref|ZP_08174131.1| recombination factor protein RarA [Lactobacillus iners UPII 143-D]
 gi|308164749|gb|EFO66999.1| recombination factor protein RarA [Lactobacillus iners LactinV
           11V1-d]
 gi|308167301|gb|EFO69467.1| recombination factor protein RarA [Lactobacillus iners LactinV
           03V1-b]
 gi|308168210|gb|EFO70330.1| recombination factor protein RarA [Lactobacillus iners LactinV
           01V1-a]
 gi|311092528|gb|EFQ50890.1| recombination factor protein RarA [Lactobacillus iners LEAF
           2062A-h1]
 gi|315489092|gb|EFU78734.1| AAA family ATPase [Lactobacillus iners ATCC 55195]
 gi|325476490|gb|EGC79649.1| recombination factor protein RarA [Lactobacillus iners UPII 143-D]
          Length = 435

 Score = 43.9 bits (102), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 17/124 (13%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP +L +  GQ       K+     +A+   L  ++  G PG+GKT++A  +A      
Sbjct: 8   MRPHSLTDVVGQQHLIGPGKIITRMVEAKL--LSSMILYGQPGIGKTSIATAIAGATKYA 65

Query: 82  FRSTSGP--------VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           FR  +          ++A+ G ++  +       +L +DEI RL    ++ L P +E  Q
Sbjct: 66  FRKLNAATDSKKDLQIVAEEGKMSGTV-------ILLLDEIQRLDKSKQDFLLPLLESGQ 118

Query: 134 LDLM 137
           + L+
Sbjct: 119 IILI 122


>gi|238021855|ref|ZP_04602281.1| hypothetical protein GCWU000324_01759 [Kingella oralis ATCC 51147]
 gi|237866469|gb|EEP67511.1| hypothetical protein GCWU000324_01759 [Kingella oralis ATCC 51147]
          Length = 426

 Score = 43.9 bits (102), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           +VL +GP G GKT LAQ +AR+L V F       + +AG    D+  ++T L        
Sbjct: 117 NVLLIGPTGSGKTLLAQSLARKLNVPFAMADATTLTEAGYVGEDVEQIITKLLGNCDFDV 176

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 177 DKAQRGIVYIDEIDKIS 193


>gi|227538769|ref|ZP_03968818.1| possible ATPase involved in DNA repair [Sphingobacterium
           spiritivorum ATCC 33300]
 gi|227241278|gb|EEI91293.1| possible ATPase involved in DNA repair [Sphingobacterium
           spiritivorum ATCC 33300]
          Length = 815

 Score = 43.9 bits (102), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 84/177 (47%), Gaps = 33/177 (18%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA---------------GDLAALLT 101
           +L + PPG GKTTL + +A+ LG++F   +GP I  +                +L  +  
Sbjct: 459 LLLISPPGYGKTTLMEYLAKILGLHFVKVNGPTIGHSITSIDPVEAKTSGEREELKKINL 518

Query: 102 NLE--DRDVLFIDEIHRLSI-IVEEILYPAMEDFQLD-LMVGEGPSARSVKINLSRFTLI 157
           + E  D  +L++D+I  LS   +++ +  A    ++D +  GE   +++  +   RF ++
Sbjct: 519 SFEMADNVMLYLDDIQHLSAEFLQKFISLADGQRKIDGIFDGE---SKTYDLRGKRFCIV 575

Query: 158 AATTRVGLLTNPLQD---RFGIPIRL-NFYEIEDLKTIVQRGAKLTGLAVTDEAACE 210
            A        NP  +   +F IP  L N  ++ +L  ++   A L  L++ + AA E
Sbjct: 576 MA-------GNPYTESGSKFQIPDMLANRADVYNLGDVIGDTAHLFNLSLIENAAIE 625


>gi|220907438|ref|YP_002482749.1| ATPase AAA [Cyanothece sp. PCC 7425]
 gi|219864049|gb|ACL44388.1| Vesicle-fusing ATPase [Cyanothece sp. PCC 7425]
          Length = 601

 Score = 43.9 bits (102), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 40/75 (53%), Gaps = 8/75 (10%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD-- 107
           E    VL VGPPG GKT  A+ +A+ELGVN  +  GP I     G+  A L  +  +   
Sbjct: 109 EPTKGVLLVGPPGTGKTLTARALAKELGVNSIAIVGPEIMGKYYGEAEARLRGIFQKAAR 168

Query: 108 ----VLFIDEIHRLS 118
               ++FIDEI  L+
Sbjct: 169 SAPCIVFIDEIDSLA 183


>gi|124485450|ref|YP_001030066.1| methyltransferase type 11 [Methanocorpusculum labreanum Z]
 gi|124362991|gb|ABN06799.1| AAA family ATPase, CDC48 subfamily [Methanocorpusculum labreanum Z]
          Length = 826

 Score = 43.9 bits (102), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 14/87 (16%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVG 61
           R ++ E AD+S        +  G  +A  +++  +E    R E            VL  G
Sbjct: 468 REIALETADVSWT------DIGGSRDAVRDVRESVEFPLTRKEVFAQLGIRPPKGVLLYG 521

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGP 88
           PPG GKT +A+ VA E G NF +  GP
Sbjct: 522 PPGTGKTMIAKAVAHESGANFIAVKGP 548



 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 23/34 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL  GPPG GKT +A+ VA E G +F S +GP I
Sbjct: 216 VLLYGPPGTGKTLIAKAVANESGAHFISIAGPEI 249


>gi|308162288|gb|EFO64695.1| AAA family ATPase [Giardia lamblia P15]
          Length = 870

 Score = 43.9 bits (102), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDRD------VL 109
           L  GPPG GK+ LA+ +A E G N+ S  GP +++K  G+    + N+ D+       VL
Sbjct: 544 LLWGPPGTGKSLLAKAIANECGCNYISIKGPELLSKWVGESEQNIRNIFDKARQAAPCVL 603

Query: 110 FIDEIHRLS 118
           F DEI  ++
Sbjct: 604 FFDEIESIT 612


>gi|302308854|ref|NP_985969.2| AFR422Wp [Ashbya gossypii ATCC 10895]
 gi|299790827|gb|AAS53793.2| AFR422Wp [Ashbya gossypii ATCC 10895]
          Length = 349

 Score = 43.9 bits (102), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RPR L++   Q  A + LK  +E+A      L H+LF GPPG GKT+    + +EL
Sbjct: 29 RPRKLDDVASQAHAITVLKRTLESAN-----LPHMLFYGPPGTGKTSTILALTKEL 79


>gi|146103031|ref|XP_001469468.1| Transitional endoplasmic reticulum ATPase; valosin-containing
           protein homolog [Leishmania infantum]
 gi|134073838|emb|CAM72577.1| putative Transitional endoplasmic reticulum ATPase [Leishmania
           infantum JPCM5]
          Length = 690

 Score = 43.9 bits (102), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 410 VLFYGPPGCGKTLLAKAIATECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCV 469

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 470 LFFDELDSVA 479


>gi|8439575|gb|AAF74998.1| cdc48-like protein [Entamoeba histolytica]
          Length = 772

 Score = 43.9 bits (102), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ VA +   NF S  GP  +    G+  A + ++ D+       V
Sbjct: 513 VLFFGPPGCGKTLLAKAVASQCKANFISIKGPELLTMWYGESEANVRDVFDKARQAAPCV 572

Query: 109 LFIDEI 114
           LF DE+
Sbjct: 573 LFFDEL 578



 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLEDR--DV 108
           VL  GPPG GKT +A+ VA E GV     +GP I         G+L       E     +
Sbjct: 240 VLLYGPPGCGKTMIARAVANETGVFLILINGPEIMSKMAGESEGNLREAFAEAEKNAPAL 299

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 300 IFIDEIDSIA 309


>gi|260911509|ref|ZP_05918097.1| cell division protein FtsH [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260634373|gb|EEX52475.1| cell division protein FtsH [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 669

 Score = 43.9 bits (102), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 108/261 (41%), Gaps = 45/261 (17%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ  A   ++  ++  K+  +  D         L VGPPG GKT LA+ VA E 
Sbjct: 193 TFKDVAGQEGAKQEVQEIVDFLKSPQKYTDLGGKIPKGALLVGPPGTGKTLLAKAVAGEA 252

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG       V   A  +  L    +++   ++FIDEI  +     +   P+M 
Sbjct: 253 GVPFFSMSGSDFVEMFVGVGASRVRDLFHQAKEKSPCIIFIDEIDAVGRARSK--NPSM- 309

Query: 131 DFQLDLMVGEGPSARSVKINL-----------SRFTLIAATTRVGLLTNPL--QDRFGIP 177
                     G   R   +N            S   ++AAT R  +L + L    RF   
Sbjct: 310 ---------GGNDERENTLNALLTEMDGFGTNSGVIILAATNRADMLDSALLRAGRFDRQ 360

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
           I ++  ++ + K I Q   +     V  ++  +I   SR TP  +G  +  V + A +  
Sbjct: 361 ISVDLPDLPERKEIFQVHLR----PVKVDSTVDIDFLSRQTPGFSGADIANVCNEAALIA 416

Query: 238 AKTITREIADAALLRLAIDKM 258
           A+  +R +     L  A+D++
Sbjct: 417 ARHNSRTVGKQDFLD-AVDRL 436


>gi|228470720|ref|ZP_04055571.1| DNA polymerase III, subunits gamma and tau [Porphyromonas uenonis
           60-3]
 gi|228307577|gb|EEK16573.1| DNA polymerase III, subunits gamma and tau [Porphyromonas uenonis
           60-3]
          Length = 429

 Score = 43.9 bits (102), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 13/104 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T +E  GQ   C  LK  I+  K     + H  LF GP G+GKT+ A+++AR +   
Sbjct: 13  RPQTFDEMLGQEAICLTLKSAIQQGK-----IAHAYLFCGPRGVGKTSAARILARTINCE 67

Query: 82  FRSTSGPVIAKAGDLAALLT----NLEDRDVL---FIDEIHRLS 118
             +  G       +  A L     N+ + D      +D+I RL+
Sbjct: 68  QLTPQGEACGVCANCQAALHQRAFNIYELDAASNNSVDDIRRLN 111


>gi|47969542|emb|CAG25608.1| ftsH-like protease [Pisum sativum]
          Length = 706

 Score = 43.9 bits (102), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ +A E GV F S SG       V   A  +  L T  + R   +
Sbjct: 262 VLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFTAAKKRSPCI 321

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 322 IFIDEI 327


>gi|159108838|ref|XP_001704687.1| AAA family ATPase [Giardia lamblia ATCC 50803]
 gi|157432757|gb|EDO77013.1| AAA family ATPase [Giardia lamblia ATCC 50803]
          Length = 870

 Score = 43.9 bits (102), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDRD------VL 109
           L  GPPG GK+ LA+ +A E G N+ S  GP +++K  G+    + N+ D+       VL
Sbjct: 544 LLWGPPGTGKSLLAKAIANECGCNYISIKGPELLSKWVGESEQNIRNIFDKARQAAPCVL 603

Query: 110 FIDEIHRLS 118
           F DEI  ++
Sbjct: 604 FFDEIESIT 612


>gi|300122519|emb|CBK23089.2| unnamed protein product [Blastocystis hominis]
          Length = 341

 Score = 43.9 bits (102), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP +L+    Q +  + +K FIE  +     L H+LF GPPG GKTT    VA+ L
Sbjct: 28 RPTSLDNIVSQDDIVATIKRFIEGNR-----LPHLLFYGPPGTGKTTTIMAVAKML 78


>gi|196048014|ref|ZP_03115192.1| stage V sporulation protein K [Bacillus cereus 03BB108]
 gi|196021270|gb|EDX59999.1| stage V sporulation protein K [Bacillus cereus 03BB108]
          Length = 550

 Score = 43.9 bits (102), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 54/104 (51%), Gaps = 23/104 (22%)

Query: 56  HVLFVGPPGLGKTTLAQVVA---RELGVNFRSTSGPVIAKAGDLAALL---TNLEDRD-- 107
           H++F G PG+GKTT A++VA   +ELGV    T   V     DL A     T L+ +D  
Sbjct: 331 HMVFKGSPGVGKTTFARIVAQLLKELGV--LKTGHLVEVDRSDLVAGYVGQTALKTKDVI 388

Query: 108 ------VLFIDEIHRLSIIVEEI-------LYPAMEDFQLDLMV 138
                 VLFIDE + L+   ++        L  AMED++ +L+V
Sbjct: 389 ESALGGVLFIDEAYSLAQNNDQFGKEAIDTLVKAMEDYRDELVV 432


>gi|296270368|ref|YP_003653000.1| AAA ATPase central domain-containing protein [Thermobispora bispora
           DSM 43833]
 gi|296093155|gb|ADG89107.1| AAA ATPase central domain protein [Thermobispora bispora DSM 43833]
          Length = 779

 Score = 43.9 bits (102), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 45/122 (36%), Positives = 60/122 (49%), Gaps = 31/122 (25%)

Query: 26  TLEEFTGQVEACSNLK----------VFIEAAKARAEA-------LDHVLFVGPPGLGKT 68
           ++EE  G++EA   L+            IEAA+ R EA       L H +FVGPPG GKT
Sbjct: 215 SVEEALGELEAMIGLEPVKEQVRAIAASIEAARLRREAGYTAEQPLRHFVFVGPPGTGKT 274

Query: 69  TLAQVVARELGVNFRSTSGPVIAKA--GDL-------AALLTN-LEDR---DVLFIDEIH 115
           T+A+ +A  +   F     P + +A   DL        A+ TN L DR    VLFIDE +
Sbjct: 275 TVARTLA-TICYAFGLLETPYVVEAQRADLVGEYLGATAIKTNELIDRALGGVLFIDEAY 333

Query: 116 RL 117
            L
Sbjct: 334 SL 335



 Score = 40.0 bits (92), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 12/76 (15%)

Query: 54  LDHVLFVGPPGLGKTTLAQVVAR---ELGVNFR-----STSGPVIAKAGDLAALLTN-LE 104
           + H +FVGPPG GKTT+A+++ R    LG+  R     +T   ++ +     A+ TN L 
Sbjct: 548 MRHFVFVGPPGTGKTTVARILGRIFAALGMLARPDVVEATRADLVGQHLGATAIKTNELI 607

Query: 105 DR---DVLFIDEIHRL 117
           DR    VLFIDE + L
Sbjct: 608 DRALGGVLFIDEAYSL 623


>gi|212704618|ref|ZP_03312746.1| hypothetical protein DESPIG_02681 [Desulfovibrio piger ATCC 29098]
 gi|212672017|gb|EEB32500.1| hypothetical protein DESPIG_02681 [Desulfovibrio piger ATCC 29098]
          Length = 813

 Score = 43.9 bits (102), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 108/261 (41%), Gaps = 62/261 (23%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           + FVGPPG+GKT+LA+ VAR  G  + R + G V  +A              G +   L 
Sbjct: 356 LCFVGPPGVGKTSLAKSVARATGREYVRLSLGGVRDEAEIRGHRRTYVGALPGKIIQSLK 415

Query: 102 NLEDRDVLF-IDEIHRLS--------IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152
            ++  + LF +DEI +++          + E+L P   +  +D  +        ++ +LS
Sbjct: 416 RVKSSNPLFCLDEIDKMTSDFRGDPASALLEVLDPEQNNTFMDHYL-------DLEYDLS 468

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFY-EIEDL---------KTIVQRGAKLTGLA 202
           +   I     +  +  PL DR  I I LN Y E E           + + + G K   +A
Sbjct: 469 KVFFITTANSLDSIPAPLLDRMEI-IELNSYLETEKRQIARNFLLPRQVKEHGLKPENIA 527

Query: 203 VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQ 262
           ++D A  EI                 +R +   A  + + REI  AAL R    ++  D 
Sbjct: 528 LSDGAILEI-----------------IRSYTREAGVRNLEREI--AALCRKTAIRLVEDN 568

Query: 263 LDLRYLTMIARNFGGGPVGIE 283
            DL     I+R      +G++
Sbjct: 569 -DLDKCVSISRQNLASFLGVK 588


>gi|253742222|gb|EES99067.1| AAA family ATPase [Giardia intestinalis ATCC 50581]
          Length = 870

 Score = 43.9 bits (102), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDRD------VL 109
           L  GPPG GK+ LA+ +A E G N+ S  GP +++K  G+    + N+ D+       VL
Sbjct: 544 LLWGPPGTGKSLLAKAIANECGCNYISIKGPELLSKWVGESEQNIRNIFDKARQAAPCVL 603

Query: 110 FIDEIHRLS 118
           F DEI  ++
Sbjct: 604 FFDEIESIT 612


>gi|164656737|ref|XP_001729496.1| hypothetical protein MGL_3531 [Malassezia globosa CBS 7966]
 gi|159103387|gb|EDP42282.1| hypothetical protein MGL_3531 [Malassezia globosa CBS 7966]
          Length = 349

 Score = 43.9 bits (102), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 6/64 (9%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT-TLAQVVARELGVN 81
          RP +L++        + L+ FI A +     L H+LF GPPG GKT T+  + AR  G +
Sbjct: 30 RPSSLDQIMSHQHITATLEKFITANQ-----LPHLLFYGPPGTGKTSTIMALAARLYGAS 84

Query: 82 FRST 85
          FR+ 
Sbjct: 85 FRNN 88


>gi|67469879|ref|XP_650911.1| cdc48-like protein [Entamoeba histolytica HM-1:IMSS]
 gi|56467577|gb|EAL45523.1| cdc48-like protein, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 772

 Score = 43.9 bits (102), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ VA +   NF S  GP  +    G+  A + ++ D+       V
Sbjct: 513 VLFFGPPGCGKTLLAKAVASQCKANFISIKGPELLTMWYGESEANVRDVFDKARQAAPCV 572

Query: 109 LFIDEI 114
           LF DE+
Sbjct: 573 LFFDEL 578



 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLEDR--DV 108
           VL  GPPG GKT +A+ VA E GV     +GP I         G+L       E     +
Sbjct: 240 VLLYGPPGCGKTMIARAVANETGVFLILINGPEIMSKMAGESEGNLREAFAEAEKNAPAL 299

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 300 IFIDEIDSIA 309


>gi|312215325|emb|CBX95277.1| similar to peroxisomal biogenesis factor 6 [Leptosphaeria maculans]
          Length = 1418

 Score = 43.9 bits (102), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 4/51 (7%)

Query: 38   SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
            S  ++F +  K R+     +LF GPPG GKT LA+ +A E  +NF S  GP
Sbjct: 1050 SRPELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 1096


>gi|312093422|ref|XP_003147677.1| VCP protein [Loa loa]
 gi|307757158|gb|EFO16392.1| VCP protein [Loa loa]
          Length = 622

 Score = 43.9 bits (102), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ +A E   NF S  GP
Sbjct: 317 VLFYGPPGCGKTLLAKAIAHECQANFISIKGP 348



 Score = 37.7 bits (86), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLEDRD--V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I          +L       E     +
Sbjct: 44  ILLYGPPGTGKTLIARAVANETGAFFFLLNGPEIMSKLAGESESNLRKAFEECEKNSPAI 103

Query: 109 LFIDEI 114
           LFIDE+
Sbjct: 104 LFIDEL 109


>gi|67623819|ref|XP_668192.1| AAA ATPase [Cryptosporidium hominis TU502]
 gi|54659385|gb|EAL37964.1| AAA ATPase [Cryptosporidium hominis]
          Length = 690

 Score = 43.9 bits (102), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 20/37 (54%), Positives = 23/37 (62%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           E    VL  GPPG GKT LA+ +A+E G NF S  GP
Sbjct: 435 ETPSGVLLYGPPGCGKTLLAKAIAKESGANFISIRGP 471



 Score = 39.3 bits (90), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 6/70 (8%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRDVLFIDEI 114
           VL  GPPG GK+ L+  +A ELG+ F   SGP I    +G   A L  L D  +    E+
Sbjct: 122 VLLQGPPGTGKSYLSMCIAGELGLPFFKLSGPNIINGVSGTSEASLRKLFDDAI----EM 177

Query: 115 HRLSIIVEEI 124
               II++EI
Sbjct: 178 APCLIIIDEI 187


>gi|299535693|ref|ZP_07049014.1| hypothetical protein BFZC1_06708 [Lysinibacillus fusiformis ZC1]
 gi|298728893|gb|EFI69447.1| hypothetical protein BFZC1_06708 [Lysinibacillus fusiformis ZC1]
          Length = 428

 Score = 43.9 bits (102), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 91/225 (40%), Gaps = 46/225 (20%)

Query: 22  LRPRTLEEFTGQVEACS-NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           +RP TL+E  G  +    N  ++      + E +  +L  G PG+GKT++A  +A    +
Sbjct: 10  MRPLTLDEIVGHQDFIGPNTALY---KMIQNEHVPSMLLYGEPGIGKTSIANAIAGSSKL 66

Query: 81  NFRSTSGPVIAKAGDLAALLTN--LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138
            F + +     K  D+  ++    +  + +LF+DEIHR + + ++ L P +E+       
Sbjct: 67  PFFALNATRAGKK-DVEDIVQEARISGKVILFLDEIHRFNKLQQDTLLPHVEN------- 118

Query: 139 GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-------RFGIPIRLNFYEIEDLKTI 191
                            LI ATT      NP  D       R G   +L     E+L  +
Sbjct: 119 -------------GSIVLIGATTE-----NPYHDVNPAIRSRCGEIYQLKRLTKENLIEL 160

Query: 192 VQ-------RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           V+       RG      A+T     +IA  + G  R A  LL  +
Sbjct: 161 VEKALADERRGLGKYHFALTPSQIEQIAAAANGDARKALTLLESI 205


>gi|125974738|ref|YP_001038648.1| ATP-dependent metalloprotease FtsH [Clostridium thermocellum ATCC
           27405]
 gi|256005251|ref|ZP_05430218.1| ATP-dependent metalloprotease FtsH [Clostridium thermocellum DSM
           2360]
 gi|281418793|ref|ZP_06249812.1| ATP-dependent metalloprotease FtsH [Clostridium thermocellum JW20]
 gi|125714963|gb|ABN53455.1| membrane protease FtsH catalytic subunit [Clostridium thermocellum
           ATCC 27405]
 gi|255990802|gb|EEU00917.1| ATP-dependent metalloprotease FtsH [Clostridium thermocellum DSM
           2360]
 gi|281407877|gb|EFB38136.1| ATP-dependent metalloprotease FtsH [Clostridium thermocellum JW20]
 gi|316941872|gb|ADU75906.1| ATP-dependent metalloprotease FtsH [Clostridium thermocellum DSM
           1313]
          Length = 599

 Score = 43.9 bits (102), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 29/60 (48%), Positives = 32/60 (53%), Gaps = 3/60 (5%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           EE    VE   N K F+E     A     VL VGPPG GKT LA+ V+ E GV F S SG
Sbjct: 167 EELREIVEFLKNSKKFLELG---ARIPKGVLLVGPPGTGKTLLAKAVSGEAGVPFFSISG 223


>gi|328880305|emb|CCA53544.1| Cell division protein FtsH [Streptomyces venezuelae ATCC 10712]
          Length = 453

 Score = 43.9 bits (102), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 6/77 (7%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLF 110
           V   GPPG GKTT A+ +A  LG  F       +A  G+LAA L +        DR ++F
Sbjct: 222 VCLFGPPGTGKTTFARGIASRLGWPFVEILPSRLADEGNLAAALRSAFARIAELDRVLVF 281

Query: 111 IDEIHRLSIIVEEILYP 127
           IDE+  ++ +  E   P
Sbjct: 282 IDEVEEIAPVRSEPAQP 298


>gi|219121314|ref|XP_002185883.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|209582732|gb|ACI65353.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 806

 Score = 43.9 bits (102), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT +A+ VA E   NF S  GP
Sbjct: 511 VLFYGPPGCGKTLMAKAVANECQANFISIKGP 542



 Score = 38.5 bits (88), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           VL  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 238 VLLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNAPAI 297

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 298 IFIDEIDSIA 307


>gi|118602250|ref|YP_903465.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
 gi|118567189|gb|ABL01994.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Candidatus
           Ruthia magnifica str. Cm (Calyptogena magnifica)]
          Length = 421

 Score = 43.9 bits (102), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L VGP G GKT LAQ +AR L V F       + +AG    D+  ++ NL        
Sbjct: 109 NILMVGPTGSGKTLLAQTLARILDVPFTVADATTLTEAGYVGDDVENVIKNLLSKCDFDP 168

Query: 104 --EDRDVLFIDEIHRLS 118
               R ++FIDEI ++S
Sbjct: 169 KRAQRGIIFIDEIDKIS 185


>gi|15922918|ref|NP_378587.1| cell division control protein [Sulfolobus tokodaii str. 7]
 gi|15623709|dbj|BAB67696.1| 700aa long hypothetical cell division control protein [Sulfolobus
           tokodaii str. 7]
          Length = 700

 Score = 43.9 bits (102), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 20/39 (51%), Positives = 25/39 (64%)

Query: 50  RAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +AE    +L  GPPG GKT LA+ VA E G NF + +GP
Sbjct: 461 KAEIPSGILLYGPPGTGKTMLARAVAHESGANFIAINGP 499



 Score = 39.3 bits (90), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DV 108
           VL  GPPG GKT +A+ +A  +  NF   SGP I     G+    L ++ ++       +
Sbjct: 207 VLLYGPPGTGKTLIAKAIANTIMANFFYISGPEIGSKYYGESEKRLRDIFEQAEKNAPSI 266

Query: 109 LFIDEI 114
           +F+DEI
Sbjct: 267 IFVDEI 272


>gi|71663369|ref|XP_818678.1| transitional endoplasmic reticulum ATPase [Trypanosoma cruzi strain
           CL Brener]
 gi|70883943|gb|EAN96827.1| transitional endoplasmic reticulum ATPase, putative [Trypanosoma
           cruzi]
          Length = 778

 Score = 43.9 bits (102), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 502 VLFYGPPGCGKTLLAKAIATECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCV 561

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 562 LFFDELDSVA 571



 Score = 39.3 bits (90), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLEDR--DV 108
           +L  GPPG GKT +A+ VA E G  F   +GP I         G+L       E     +
Sbjct: 229 ILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGESEGNLRKAFEEAEKNAPSI 288

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 289 VFIDEIDSIA 298


>gi|327334168|gb|EGE75882.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL097PA1]
          Length = 429

 Score = 43.9 bits (102), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 60/135 (44%), Gaps = 37/135 (27%)

Query: 21  LLRPRTLEEF-----TGQVEACSNLKVFI--------------EAAKARAEALD----HV 57
           L RPR L EF      GQ EA   L V +               A +A  + ++    ++
Sbjct: 62  LPRPRELCEFLDTWVIGQEEAKRTLSVAVYNHYKRIQSEVNVPHARRAEDDGVELGKSNI 121

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------------- 103
           L +GP G GKT LAQ +AR+L V F       + +AG +   + N+              
Sbjct: 122 LMLGPTGCGKTYLAQTMARQLNVPFAMADATALTEAGYVGEDVENILLKLLQAADFDVKR 181

Query: 104 EDRDVLFIDEIHRLS 118
            +R +++IDEI +++
Sbjct: 182 AERGIVYIDEIDKVA 196


>gi|154499606|ref|ZP_02037644.1| hypothetical protein BACCAP_03262 [Bacteroides capillosus ATCC
           29799]
 gi|150271684|gb|EDM98928.1| hypothetical protein BACCAP_03262 [Bacteroides capillosus ATCC
           29799]
          Length = 665

 Score = 43.9 bits (102), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 39/66 (59%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDR------DV 108
           +L VGPPG GKT LA+ VA E GV+F S SG   V    G  A+ + +L D+       +
Sbjct: 206 ILLVGPPGTGKTLLAKAVAGEAGVHFLSISGSDFVELYVGVGASRVRDLFDQAKKNSPAI 265

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 266 VFIDEI 271


>gi|323509185|dbj|BAJ77485.1| cgd5_2010 [Cryptosporidium parvum]
 gi|323509813|dbj|BAJ77799.1| cgd5_2010 [Cryptosporidium parvum]
          Length = 690

 Score = 43.9 bits (102), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 20/37 (54%), Positives = 23/37 (62%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           E    VL  GPPG GKT LA+ +A+E G NF S  GP
Sbjct: 435 ETPSGVLLYGPPGCGKTLLAKAIAKESGANFISIRGP 471



 Score = 39.3 bits (90), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 6/70 (8%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRDVLFIDEI 114
           VL  GPPG GK+ L+  +A ELG+ F   SGP I    +G   A L  L D  +    E+
Sbjct: 122 VLLQGPPGTGKSYLSMCIAGELGLPFFKLSGPNIINGVSGTSEASLRKLFDDAI----EM 177

Query: 115 HRLSIIVEEI 124
               II++EI
Sbjct: 178 APCLIIIDEI 187


>gi|254520720|ref|ZP_05132776.1| ATP-dependent proteinase La [Clostridium sp. 7_2_43FAA]
 gi|226914469|gb|EEH99670.1| ATP-dependent proteinase La [Clostridium sp. 7_2_43FAA]
          Length = 630

 Score = 43.9 bits (102), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 88/236 (37%), Gaps = 54/236 (22%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE- 77
           +SLLRP T +E  GQ  A  +L      +K  +    H++  GPPG+GKT+ A++   E 
Sbjct: 162 MSLLRPETFDEVVGQERAIKSL-----ISKMASPYPQHIILYGPPGVGKTSAARLALEEA 216

Query: 78  ---------------------LGVNFRSTSGPVIAKA---------GDLAAL-------- 99
                                L  + R  + P++             DLA +        
Sbjct: 217 KKLQSTPFDGDSKFVEVDGTTLRWDPREITNPLLGSVHDPIYQGSKKDLAEIGVPEPKTG 276

Query: 100 LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG-----EGPSARSVKINLSR- 153
           L       VLFIDEI  L  I++  L   +ED +++         +  +   +K    + 
Sbjct: 277 LVTEAHGGVLFIDEIGELDEILQNKLLKVLEDKRVEYSSSYYDPDDENTPEYIKYLFEKG 336

Query: 154 ----FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTD 205
               F LI ATTR     NP        +        D+K I+   +K   + + D
Sbjct: 337 APADFVLIGATTREPGKINPALRSRCTEVYFEPLSPSDIKGIIDNASKKLNVQLED 392


>gi|189203625|ref|XP_001938148.1| peroxisomal biogenesis factor 6 [Pyrenophora tritici-repentis
            Pt-1C-BFP]
 gi|187985247|gb|EDU50735.1| peroxisomal biogenesis factor 6 [Pyrenophora tritici-repentis
            Pt-1C-BFP]
          Length = 1409

 Score = 43.9 bits (102), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 4/51 (7%)

Query: 38   SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
            S  ++F +  K R+     +LF GPPG GKT LA+ +A E  +NF S  GP
Sbjct: 1042 SRPELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 1088


>gi|197294665|ref|YP_001799206.1| DNA polymerase III, gamma/tau subunit [Candidatus Phytoplasma
           australiense]
 gi|171853992|emb|CAM11957.1| DNA polymerase III, gamma/tau subunit [Candidatus Phytoplasma
           australiense]
          Length = 602

 Score = 43.9 bits (102), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 100/239 (41%), Gaps = 52/239 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKA--RAEALDHV-LFVGPPGLGKTTLAQVVARELG 79
           RP+T ++  GQ       K  I+  K   R + ++H  LF G  G GKTTLA++ A+ + 
Sbjct: 13  RPQTFQDVVGQ-------KFIIQTLKNAIRYQKINHCYLFSGNKGTGKTTLAKIFAKVIN 65

Query: 80  VNFRSTSGPVIAKAGD-LAALLTN-----LEDRDVLFIDEIHRLS--------------I 119
             +   SG V  K    L +L TN     L+      +DEI  +                
Sbjct: 66  CIY-PQSGDVCNKCTSCLGSLQTNNDIVELDGASYNGVDEIREIQDKAQYKPHIGKNKVY 124

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR---FGI 176
           I++E+       F   L + E P    V      F LI  TT++  +   +  R   F  
Sbjct: 125 IIDEVHVLTPNAFNALLKILEEPPKHVV------FILI--TTQMHKIPETILSRAQSFS- 175

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGL---AVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
                 +E   L+ I+ +  K+T L    +TD+A  +IA  S G+ R A  LL ++  +
Sbjct: 176 ------FENLSLENIILQLKKITNLEKIVITDDAIKDIANYSEGSMRNALSLLDQISSY 228


>gi|156062650|ref|XP_001597247.1| hypothetical protein SS1G_01441 [Sclerotinia sclerotiorum 1980]
 gi|154696777|gb|EDN96515.1| hypothetical protein SS1G_01441 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 1390

 Score = 43.9 bits (102), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%)

Query: 41   KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
            ++F +  K R+     +LF GPPG GKT LA+ +A E  +NF S  GP
Sbjct: 1020 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 1063


>gi|322820539|gb|EFZ27127.1| transitional endoplasmic reticulum ATPase, putative [Trypanosoma
           cruzi]
          Length = 778

 Score = 43.9 bits (102), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 502 VLFYGPPGCGKTLLAKAIATECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCV 561

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 562 LFFDELDSVA 571



 Score = 39.3 bits (90), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLEDR--DV 108
           +L  GPPG GKT +A+ VA E G  F   +GP I         G+L       E     +
Sbjct: 229 ILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGESEGNLRKAFEEAEKNAPSI 288

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 289 VFIDEIDSIA 298


>gi|330936009|ref|XP_003305212.1| hypothetical protein PTT_17994 [Pyrenophora teres f. teres 0-1]
 gi|311317861|gb|EFQ86690.1| hypothetical protein PTT_17994 [Pyrenophora teres f. teres 0-1]
          Length = 1416

 Score = 43.9 bits (102), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 4/51 (7%)

Query: 38   SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
            S  ++F +  K R+     +LF GPPG GKT LA+ +A E  +NF S  GP
Sbjct: 1051 SRPELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 1097


>gi|289192114|ref|YP_003458055.1| transcriptional regulator, XRE family [Methanocaldococcus sp.
          FS406-22]
 gi|288938564|gb|ADC69319.1| transcriptional regulator, XRE family [Methanocaldococcus sp.
          FS406-22]
          Length = 864

 Score = 43.9 bits (102), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 5/50 (10%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
          +   RP+TL++  GQ E    LK ++E      +++ H+LF GPPG+GK 
Sbjct: 6  VEKYRPKTLDDIVGQDEIVKRLKKYVEK-----KSMPHLLFSGPPGVGKC 50


>gi|313813440|gb|EFS51154.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL025PA1]
          Length = 429

 Score = 43.9 bits (102), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 60/135 (44%), Gaps = 37/135 (27%)

Query: 21  LLRPRTLEEF-----TGQVEACSNLKVFI--------------EAAKARAEALD----HV 57
           L RPR L EF      GQ EA   L V +               A +A  + ++    ++
Sbjct: 62  LPRPRELCEFLDAWVIGQEEAKRTLSVAVYNHYKRIQSEVNVPHARRAEDDGVELGKSNI 121

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------------- 103
           L +GP G GKT LAQ +AR+L V F       + +AG +   + N+              
Sbjct: 122 LMLGPTGCGKTYLAQTMARQLNVPFAMADATALTEAGYVGEDVENILLKLLQAADFDVKR 181

Query: 104 EDRDVLFIDEIHRLS 118
            +R +++IDEI +++
Sbjct: 182 AERGIVYIDEIDKVA 196


>gi|212704617|ref|ZP_03312745.1| hypothetical protein DESPIG_02680 [Desulfovibrio piger ATCC 29098]
 gi|212672016|gb|EEB32499.1| hypothetical protein DESPIG_02680 [Desulfovibrio piger ATCC 29098]
          Length = 425

 Score = 43.9 bits (102), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 63/134 (47%), Gaps = 30/134 (22%)

Query: 15  EDADISLLRPRT----LEEFT-GQVEACSNLKVFIEAAKAR---AEAL--------DHVL 58
           E+AD  LL P+     L+E+  GQ EA   L V +     R   A+AL         ++L
Sbjct: 57  EEADERLLSPQEIKARLDEYVIGQTEAKKILSVAVHNHYKRVFFADALGDDVELEKSNIL 116

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD--------LAALLTNLE------ 104
            VGP G GKT LA+ +A+ L V F       + +AG         L  LL N +      
Sbjct: 117 LVGPSGSGKTLLAKTLAKVLRVPFAIADATTLTEAGYVGEDVENILVQLLQNADYDIEAA 176

Query: 105 DRDVLFIDEIHRLS 118
            + +++IDEI ++S
Sbjct: 177 SKGIIYIDEIDKIS 190


>gi|167999153|ref|XP_001752282.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162696677|gb|EDQ83015.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 550

 Score = 43.9 bits (102), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 35/69 (50%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLED------RDV 108
           VL  GPPG GKT LA+ VA E G NF + +G  I     GD   L  +L          V
Sbjct: 288 VLLFGPPGTGKTLLAKAVATEAGANFINITGSTITSKWFGDAEKLTKSLFSLAKKLAPAV 347

Query: 109 LFIDEIHRL 117
           +F+DE+  L
Sbjct: 348 IFVDEVDSL 356


>gi|169603057|ref|XP_001794950.1| hypothetical protein SNOG_04535 [Phaeosphaeria nodorum SN15]
 gi|160706319|gb|EAT88295.2| hypothetical protein SNOG_04535 [Phaeosphaeria nodorum SN15]
          Length = 1313

 Score = 43.9 bits (102), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 4/51 (7%)

Query: 38   SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
            S  ++F +  K R+     +LF GPPG GKT LA+ +A E  +NF S  GP
Sbjct: 962  SRPELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 1008


>gi|85375691|ref|YP_459753.1| cell division cycle protein [Erythrobacter litoralis HTCC2594]
 gi|84788774|gb|ABC64956.1| Cell division cycle protein [Erythrobacter litoralis HTCC2594]
          Length = 772

 Score = 43.9 bits (102), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 36/70 (51%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG---DLAALLTNLEDRD-----V 108
           VL  GPPG GKT LAQ VA E   NF   +GP I  +G      AL    E+       +
Sbjct: 243 VLLHGPPGTGKTRLAQAVANESDANFSIINGPEIMGSGYGDSEKALREVFENASKNAPAI 302

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 303 IFIDEIDSIA 312


>gi|2853003|gb|AAC02215.1| valosin-containing protein homolog [Trypanosoma brucei]
 gi|261332619|emb|CBH15614.1| Transitional endoplasmic reticulum ATPase,putative [Trypanosoma
           brucei gambiense DAL972]
          Length = 780

 Score = 43.9 bits (102), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 503 VLFYGPPGCGKTLLAKAIATECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCV 562

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 563 LFFDELDSVA 572



 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN--LEDRD----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+    L N  +E       +
Sbjct: 230 ILMYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGESEGNLRNAFVESEKNAPAI 289

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 290 IFIDEIDSIA 299


>gi|71747532|ref|XP_822821.1| valosin-containing protein homolog [Trypanosoma brucei TREU927]
 gi|70832489|gb|EAN77993.1| valosin-containing protein homolog [Trypanosoma brucei]
          Length = 780

 Score = 43.9 bits (102), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 503 VLFYGPPGCGKTLLAKAIATECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCV 562

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 563 LFFDELDSVA 572



 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN--LEDRD----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+    L N  +E       +
Sbjct: 230 ILMYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGESEGNLRNAFVESEKNAPAI 289

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 290 IFIDEIDSIA 299


>gi|66357928|ref|XP_626142.1| nuclear VCP like protein with 2 AAA ATpase domains [Cryptosporidium
           parvum Iowa II]
 gi|46227286|gb|EAK88236.1| nuclear VCP like protein with 2 AAA ATpase domains [Cryptosporidium
           parvum Iowa II]
          Length = 695

 Score = 43.9 bits (102), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 20/37 (54%), Positives = 23/37 (62%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           E    VL  GPPG GKT LA+ +A+E G NF S  GP
Sbjct: 440 ETPSGVLLYGPPGCGKTLLAKAIAKESGANFISIRGP 476



 Score = 39.3 bits (90), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 6/70 (8%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRDVLFIDEI 114
           VL  GPPG GK+ L+  +A ELG+ F   SGP I    +G   A L  L D  +    E+
Sbjct: 127 VLLQGPPGTGKSYLSMCIAGELGLPFFKLSGPNIINGVSGTSEASLRKLFDDAI----EM 182

Query: 115 HRLSIIVEEI 124
               II++EI
Sbjct: 183 APCLIIIDEI 192


>gi|327310634|ref|YP_004337531.1| AAA family ATPase [Thermoproteus uzoniensis 768-20]
 gi|326947113|gb|AEA12219.1| AAA family ATPase, possible cell division control protein cdc48
           [Thermoproteus uzoniensis 768-20]
          Length = 755

 Score = 43.9 bits (102), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 52/118 (44%), Gaps = 17/118 (14%)

Query: 24  PRTLEEFTGQVE-ACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVV 74
           PR   E  G +E A   ++  +E      E   H        +L  GPPG GKT LA+ V
Sbjct: 175 PRVTWEDIGDLEEAKQKIRELVELPLRHPELFKHLGIEPPKGILLYGPPGTGKTLLAKAV 234

Query: 75  ARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DVLFIDEIHRLSIIVEEI 124
           A E    F + +GP I     G+  A L  + D        ++FIDEI  ++   EE+
Sbjct: 235 ANEANAYFIAINGPEIMSKYYGESEAKLREIFDEAKKNAPAIIFIDEIDAIAPKREEV 292



 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDRD------V 108
           +L  GPPG+GKT  A+ VA E G NF +  GP V++K  G+    +  +  R       V
Sbjct: 505 ILLYGPPGVGKTMFAKAVATESGANFIAVRGPEVLSKWVGESEKAVREIFKRARMAAPCV 564

Query: 109 LFIDEIHRLS 118
           +F DEI  ++
Sbjct: 565 VFFDEIDSIA 574


>gi|225556425|gb|EEH04713.1| peroxisomal biogenesis factor 6 [Ajellomyces capsulatus G186AR]
          Length = 1509

 Score = 43.9 bits (102), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%)

Query: 41   KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
            ++F +  K R+     +LF GPPG GKT LA+ +A E  +NF S  GP
Sbjct: 1062 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 1105


>gi|238484815|ref|XP_002373646.1| peroxisome biosynthesis protein (PAS8/Peroxin-6), putative
           [Aspergillus flavus NRRL3357]
 gi|220701696|gb|EED58034.1| peroxisome biosynthesis protein (PAS8/Peroxin-6), putative
           [Aspergillus flavus NRRL3357]
          Length = 1173

 Score = 43.9 bits (102), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%)

Query: 41  KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           ++F +  K R+     +LF GPPG GKT LA+ +A E  +NF S  GP
Sbjct: 900 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 943


>gi|154284786|ref|XP_001543188.1| peroxisomal biogenesis factor 6 [Ajellomyces capsulatus NAm1]
 gi|150406829|gb|EDN02370.1| peroxisomal biogenesis factor 6 [Ajellomyces capsulatus NAm1]
          Length = 1442

 Score = 43.9 bits (102), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 22/32 (68%)

Query: 57   VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
            +LF GPPG GKT LA+ +A E  +NF S  GP
Sbjct: 1074 ILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 1105


>gi|219849757|ref|YP_002464190.1| ATP-dependent protease La [Chloroflexus aggregans DSM 9485]
 gi|219544016|gb|ACL25754.1| ATP-dependent protease La [Chloroflexus aggregans DSM 9485]
          Length = 812

 Score = 43.9 bits (102), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 99/244 (40%), Gaps = 51/244 (20%)

Query: 59  FVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLTNL 103
           FVGPPG+GKT+L Q +AR LG +F R + G V  +A              G +   L   
Sbjct: 369 FVGPPGVGKTSLGQSIARALGRSFVRMSLGGVRDEAELRGFRRTYIGSQPGRIIQELRRA 428

Query: 104 EDRD-VLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLSRF 154
              D V+ +DEI +L I           E+L P       D  +       ++  +LSR 
Sbjct: 429 GTADPVILLDEIDKLGIDYRGDPAAALLEVLDPEQNHTFTDHYL-------NLPFDLSRV 481

Query: 155 TLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED------LKTIVQRGAKLTGLAVTDEAA 208
             +A       +   L+DR  + I L+ Y IED      L  +V R  +  GL   +   
Sbjct: 482 LFLATANTWDTVPPALRDRMEV-IELSGY-IEDEKVQIALSHLVPRQLRANGLRPDEATV 539

Query: 209 CEIAMRS-----------RGTPRIAGRLLRRV-RDFAEVAHAKTITREIADAALLRLAID 256
            E A+R            R   R  G +LR+V R  +E          + DAA +R A+ 
Sbjct: 540 SEEALRCIINEYTREAGVRNLERSIGAVLRKVARRLSEGEIDPANLPFVVDAAFVRTALG 599

Query: 257 KMGF 260
           +  F
Sbjct: 600 RPRF 603


>gi|157167438|ref|XP_001660693.1| metalloprotease m41 ftsh [Aedes aegypti]
 gi|108873589|gb|EAT37814.1| metalloprotease m41 ftsh [Aedes aegypti]
          Length = 598

 Score = 43.9 bits (102), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 43/122 (35%), Positives = 56/122 (45%), Gaps = 19/122 (15%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFV 60
           +   V  +  DIS+    T E+  G  EA   LK  +E  K   +  +        VL V
Sbjct: 140 IGNQVEVDPEDISV----TFEDVKGCDEAKQELKEVVEFLKNPDKFSNLGGKLPKGVLLV 195

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFID 112
           GPPG GKT LA+ VA E GV F   +GP      V   A  +  L    ++R   V+FID
Sbjct: 196 GPPGTGKTLLARAVAGEAGVPFFHAAGPEFDEVLVGQGARRVRDLFKAAKERAPCVIFID 255

Query: 113 EI 114
           EI
Sbjct: 256 EI 257


>gi|303327632|ref|ZP_07358073.1| cell division protein FtsH [Desulfovibrio sp. 3_1_syn3]
 gi|302862572|gb|EFL85505.1| cell division protein FtsH [Desulfovibrio sp. 3_1_syn3]
          Length = 681

 Score = 43.9 bits (102), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 29/60 (48%), Positives = 32/60 (53%), Gaps = 3/60 (5%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           EE +  VE  SN K F        +    VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 155 EELSEVVEFLSNPKKFTRLGGRIPKG---VLLVGPPGTGKTLLARAVAGEAGVPFFSISG 211


>gi|302853734|ref|XP_002958380.1| hypothetical protein VOLCADRAFT_121711 [Volvox carteri f.
           nagariensis]
 gi|300256260|gb|EFJ40530.1| hypothetical protein VOLCADRAFT_121711 [Volvox carteri f.
           nagariensis]
          Length = 1021

 Score = 43.9 bits (102), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL------EDRDV 108
           ++F GPPG GKT LA+ +A E GV F S+ G    +  AG  AA + NL      +   +
Sbjct: 333 IIFQGPPGTGKTYLARAIAGEAGVPFFSSVGSEFVEMFAGVAAARVNNLFYNARKKAPAI 392

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 393 IFIDEI 398


>gi|284176047|ref|ZP_06390016.1| TATA binding protein (TBP)-interacting protein (TIP49-like),
          putative [Sulfolobus solfataricus 98/2]
          Length = 452

 Score = 43.9 bits (102), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 28/50 (56%)

Query: 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
            GQ EA     V ++  K    +   +LFVGPPG GKT LA  +ARELG
Sbjct: 39 LVGQAEAREAAGVVVQLIKQGKMSGKGILFVGPPGTGKTALAVAIARELG 88


>gi|156977714|ref|YP_001448620.1| hypothetical protein VIBHAR_06502 [Vibrio harveyi ATCC BAA-1116]
 gi|156529308|gb|ABU74393.1| hypothetical protein VIBHAR_06502 [Vibrio harveyi ATCC BAA-1116]
          Length = 1620

 Score = 43.9 bits (102), Expect = 0.038,   Method: Composition-based stats.
 Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 12/101 (11%)

Query: 1    MMDREGLLSRNVSQEDADISLLRPRTLEEFT-GQVEACSNLKVFIE---------AAKAR 50
            +  R  LLS   ++ED  +S  +PR L  F   ++ + S L +  +           K R
Sbjct: 1198 LSQRAQLLSS--AKEDFRLSEFKPRPLTSFVRNKLISESYLPLIGDNFAKQMGTLGDKKR 1255

Query: 51   AEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA 91
             + +  +L + PPG GKTTL + +A +LG+ F   +GP I 
Sbjct: 1256 TDLMGMLLLISPPGYGKTTLIEYIAHKLGLVFMKINGPSIG 1296


>gi|327537415|gb|EGF24144.1| cell division protein FtsH [Rhodopirellula baltica WH47]
          Length = 728

 Score = 43.9 bits (102), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 53/109 (48%), Gaps = 15/109 (13%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAK--ARAEAL-----DHVLFVGPPGLGKTTLAQVVAR 76
           P T E+  G  EA   ++  ++  K   + ++L       VL VGPPG GKT LA+ +A 
Sbjct: 247 PTTFEDVAGIEEAVDEVREVVDFLKNSEKYQSLGGRIPKGVLLVGPPGTGKTLLAKAIAG 306

Query: 77  ELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRL 117
           E GV F S SG       V   A  +  + T   +R   ++FIDE+  L
Sbjct: 307 EAGVPFFSLSGSDFVEMFVGVGAARVRDMFTQAVNRAPCIIFIDELDAL 355


>gi|323473727|gb|ADX84333.1| TIP49 domain protein [Sulfolobus islandicus REY15A]
          Length = 452

 Score = 43.9 bits (102), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 28/50 (56%)

Query: 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
            GQ EA     V ++  K    +   +LFVGPPG GKT LA  +ARELG
Sbjct: 39 LVGQAEAREAAGVVVQLIKQGKMSGKGILFVGPPGTGKTALAVAIARELG 88


>gi|231292279|dbj|BAH58757.1| peroxin 6 [Alternaria alternata]
          Length = 1444

 Score = 43.9 bits (102), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 4/51 (7%)

Query: 38   SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
            S  ++F +  K R+     +LF GPPG GKT LA+ +A E  +NF S  GP
Sbjct: 1050 SRPELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 1096


>gi|225683265|gb|EEH21549.1| peroxisomal biogenesis factor 6 [Paracoccidioides brasiliensis Pb03]
          Length = 1477

 Score = 43.9 bits (102), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%)

Query: 41   KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
            ++F +  K R+     +LF GPPG GKT LA+ +A E  +NF S  GP
Sbjct: 1035 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 1078


>gi|150403344|ref|YP_001330638.1| replication factor C small subunit [Methanococcus maripaludis C7]
 gi|166225156|sp|A6VJ61|RFCS_METM7 RecName: Full=Replication factor C small subunit; Short=RFC small
          subunit; AltName: Full=Clamp loader small subunit
 gi|150034374|gb|ABR66487.1| Replication factor C [Methanococcus maripaludis C7]
          Length = 315

 Score = 43.9 bits (102), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 6/64 (9%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81
          RP+TL E  G  E    L  ++E      +++ H+LF G PG+GKTT A  +A++L G  
Sbjct: 10 RPQTLSEVVGHHEIIKRLTNYVEK-----KSMPHLLFSGSPGVGKTTAALALAKDLYGET 64

Query: 82 FRST 85
          +R  
Sbjct: 65 WREN 68


>gi|30248910|ref|NP_840980.1| ftsH; cell division protein [Nitrosomonas europaea ATCC 19718]
 gi|30138527|emb|CAD84817.1| ftsH; cell division protein [Nitrosomonas europaea ATCC 19718]
          Length = 619

 Score = 43.9 bits (102), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 48/92 (52%), Gaps = 8/92 (8%)

Query: 34  VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK- 92
           VE  + LK   E ++    A   +L VGPPG GKT LA+ VA E GV F S SG    + 
Sbjct: 176 VEIVNFLKNPKEYSRLGGRAPKGILLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEM 235

Query: 93  -AGDLAALLTNLEDR------DVLFIDEIHRL 117
             G  AA + +L ++       ++FIDE+  L
Sbjct: 236 FVGVGAARVRDLFEQARQMAPAIIFIDELDSL 267


>gi|315223833|ref|ZP_07865681.1| DNA polymerase III, gamma/tau subunit DnaX [Capnocytophaga ochracea
           F0287]
 gi|314946163|gb|EFS98164.1| DNA polymerase III, gamma/tau subunit DnaX [Capnocytophaga ochracea
           F0287]
          Length = 363

 Score = 43.9 bits (102), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 97/237 (40%), Gaps = 32/237 (13%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP++  +  GQ    + L   IE     A+AL   LF GP G+GKTT A+++A+++    
Sbjct: 12  RPQSFRDVVGQQAITNTLLNAIENNHL-AQAL---LFTGPRGVGKTTCARILAKKIN--- 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL--------------SIIVEEILYPA 128
             TSG  +    D A  +  L+      +D+I +L                I++E+   +
Sbjct: 65  EQTSG--VEDENDFAFNVFELDAASNNSVDDIRKLIEQVRIPPQVGKYKVYIIDEVHMLS 122

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
              F   L   E P   ++         I ATT    +   +  R  I        I D+
Sbjct: 123 TAAFNAFLKTLEEPPKHAI--------FILATTEKHKIIPTILSRCQI-FDFKRITINDI 173

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           +  ++  A+  G+   DEA   IA ++ G  R A  +  RV  F+     +  T EI
Sbjct: 174 REYLKYIAEQQGIEAEDEALQIIAQKADGAMRDALSIFDRVVSFSGEKITRQATSEI 230


>gi|310790808|gb|EFQ26341.1| replication factor C [Glomerella graminicola M1.001]
          Length = 383

 Score = 43.9 bits (102), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 5/60 (8%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          +   RP+TL + T Q    + L+  ++A+      L H+LF GPPG GKT+    +A+EL
Sbjct: 36 VEKYRPKTLSDVTAQDHTVTVLQRTLQASN-----LPHMLFYGPPGTGKTSTVLALAKEL 90


>gi|261600946|gb|ACX90549.1| TIP49 domain protein [Sulfolobus solfataricus 98/2]
          Length = 452

 Score = 43.9 bits (102), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 28/50 (56%)

Query: 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
            GQ EA     V ++  K    +   +LFVGPPG GKT LA  +ARELG
Sbjct: 39 LVGQAEAREAAGVVVQLIKQGKMSGKGILFVGPPGTGKTALAVAIARELG 88


>gi|258575415|ref|XP_002541889.1| peroxisomal biogenesis factor 6 [Uncinocarpus reesii 1704]
 gi|237902155|gb|EEP76556.1| peroxisomal biogenesis factor 6 [Uncinocarpus reesii 1704]
          Length = 1399

 Score = 43.9 bits (102), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%)

Query: 41   KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
            ++F +  K R+     +LF GPPG GKT LA+ +A E  +NF S  GP
Sbjct: 1059 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 1102


>gi|227826648|ref|YP_002828427.1| TIP49 domain protein [Sulfolobus islandicus M.14.25]
 gi|229583812|ref|YP_002842313.1| TIP49 domain protein [Sulfolobus islandicus M.16.27]
 gi|238618734|ref|YP_002913559.1| TIP49 domain protein [Sulfolobus islandicus M.16.4]
 gi|227458443|gb|ACP37129.1| TIP49 domain protein [Sulfolobus islandicus M.14.25]
 gi|228018861|gb|ACP54268.1| TIP49 domain protein [Sulfolobus islandicus M.16.27]
 gi|238379803|gb|ACR40891.1| TIP49 domain protein [Sulfolobus islandicus M.16.4]
 gi|323476379|gb|ADX81617.1| TIP49 domain protein [Sulfolobus islandicus HVE10/4]
          Length = 452

 Score = 43.9 bits (102), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 28/50 (56%)

Query: 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
            GQ EA     V ++  K    +   +LFVGPPG GKT LA  +ARELG
Sbjct: 39 LVGQAEAREAAGVVVQLIKQGKMSGKGILFVGPPGTGKTALAVAIARELG 88


>gi|281422657|ref|ZP_06253656.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Prevotella
           copri DSM 18205]
 gi|281403327|gb|EFB34007.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Prevotella
           copri DSM 18205]
          Length = 761

 Score = 43.9 bits (102), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 66/151 (43%), Gaps = 22/151 (14%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKA----RAEALDHVLFVGPPGLGKTTLAQVV 74
           ++ LR R L++  GQ +A   +   +  AKA      + L  +LFVGP G+GKT +A+ +
Sbjct: 465 LATLRQRILDKIYGQDKAVDKVVEAVMMAKAGLTDDDKPLASLLFVGPTGVGKTEVARQL 524

Query: 75  ARELGVNF------RSTSGPVIAKAGDLAALLTNLED------------RDVLFIDEIHR 116
           A+ELG+          T    +AK     A     ED              VL +DEI +
Sbjct: 525 AKELGIELVRFDMSEYTEKHTVAKLIGSPAGYVGYEDGGLLTDAIRKTPNCVLLLDEIEK 584

Query: 117 LSIIVEEILYPAMEDFQLDLMVGEGPSARSV 147
               +  IL   M+  +L    G+    R+V
Sbjct: 585 AHSDIYNILLQVMDYARLTDNKGQKADFRNV 615


>gi|78357487|ref|YP_388936.1| Lon-A peptidase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
 gi|78219892|gb|ABB39241.1| ATP-dependent proteinase, Serine peptidase, MEROPS family S16
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
          Length = 809

 Score = 43.9 bits (102), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 72/162 (44%), Gaps = 32/162 (19%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAKAGDLAALLT 101
           + F GPPG+GKT+L + +AR LG  F+  S                 + A  G +   + 
Sbjct: 385 LCFSGPPGVGKTSLGRSIARALGRKFQRISLGGMRDEAEIRGHRRTYIGAMPGRIIQTIK 444

Query: 102 NLEDRD-VLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152
            L  R+ V+ +DEI +L        S  + E+L P  ++F             +V  +LS
Sbjct: 445 QLGTRNPVIMLDEIDKLGSDFRGDPSSALLEVLDPE-QNFSF------SDHYLNVPFDLS 497

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           +   I    ++  +  PL+DR  I IR+  Y +++   I +R
Sbjct: 498 KVMFICTANQLETIPAPLRDRMEI-IRIPGYTMQEKAKIARR 538


>gi|67524935|ref|XP_660529.1| hypothetical protein AN2925.2 [Aspergillus nidulans FGSC A4]
 gi|40744320|gb|EAA63496.1| hypothetical protein AN2925.2 [Aspergillus nidulans FGSC A4]
          Length = 1513

 Score = 43.9 bits (102), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%)

Query: 41   KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
            ++F +  K R+     +LF GPPG GKT LA+ +A E  +NF S  GP
Sbjct: 1049 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 1092


>gi|328870426|gb|EGG18800.1| cell division cycle protein 48 [Dictyostelium fasciculatum]
          Length = 798

 Score = 43.9 bits (102), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  + +  L D+       V
Sbjct: 511 VLFYGPPGCGKTLLAKAIASECQANFISIKGPELLTMWFGESESNVRELFDKARQAAPCV 570

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 571 LFFDELDSIA 580



 Score = 38.9 bits (89), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 238 ILLYGPPGCGKTMIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAI 297

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 298 IFIDEIDSIA 307


>gi|325087437|gb|EGC40747.1| peroxisomal biogenesis factor 6 [Ajellomyces capsulatus H88]
          Length = 1509

 Score = 43.9 bits (102), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%)

Query: 41   KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
            ++F +  K R+     +LF GPPG GKT LA+ +A E  +NF S  GP
Sbjct: 1062 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 1105


>gi|297527311|ref|YP_003669335.1| AAA family ATPase, CDC48 subfamily [Staphylothermus hellenicus DSM
           12710]
 gi|297256227|gb|ADI32436.1| AAA family ATPase, CDC48 subfamily [Staphylothermus hellenicus DSM
           12710]
          Length = 734

 Score = 43.9 bits (102), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 62/133 (46%), Gaps = 17/133 (12%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVE-ACSNLKVFIEAAKARAEALDH--------VLF 59
           S  V +E  + + + P+   E  G +E A   ++  +E      E   H        +L 
Sbjct: 169 SEPVKEEVIERARMIPKVTWEDIGDLEEAKQKIREIVELPLKHPELFKHLGIEPPKGILL 228

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL---EDRD---VLFI 111
            GPPG GKT LA+ +A E+G  F + +GP I     G+    L  +    +R+   ++FI
Sbjct: 229 HGPPGTGKTLLAKALANEIGAYFTAINGPEIMSKFYGESEQRLREIFEEAERNAPAIIFI 288

Query: 112 DEIHRLSIIVEEI 124
           DEI  ++   EE+
Sbjct: 289 DEIDSIAPKREEV 301



 Score = 42.7 bits (99), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 21/39 (53%), Positives = 24/39 (61%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           EA   +L  GPPG GKT LA+ VA E G NF +  GP I
Sbjct: 495 EAPKGILLFGPPGTGKTLLAKAVATESGANFIAVRGPEI 533


>gi|220678160|emb|CAX13256.1| nuclear VCP-like [Danio rerio]
          Length = 796

 Score = 43.9 bits (102), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT LA+ VA E G+NF S  GP
Sbjct: 557 LLLAGPPGCGKTLLAKAVANESGLNFISVKGP 588



 Score = 35.8 bits (81), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 32/65 (49%), Gaps = 8/65 (12%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDRD------VL 109
           L  GPPG GKT LAQ VA E  +     S P  V   +G+    L  L ++       +L
Sbjct: 264 LLHGPPGCGKTLLAQAVAGETALPLLKISAPELVSGVSGESEQKLRELFEQAISSAPCIL 323

Query: 110 FIDEI 114
           FIDEI
Sbjct: 324 FIDEI 328


>gi|34540240|ref|NP_904719.1| ATP-dependent protease ATP-binding subunit ClpX [Porphyromonas
           gingivalis W83]
 gi|188995414|ref|YP_001929666.1| ATP-dependent protease ATP-binding subunit ClpX [Porphyromonas
           gingivalis ATCC 33277]
 gi|46576403|sp|Q7MX10|CLPX_PORGI RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238689262|sp|B2RL24|CLPX_PORG3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|34396552|gb|AAQ65618.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Porphyromonas
           gingivalis W83]
 gi|188595094|dbj|BAG34069.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Porphyromonas
           gingivalis ATCC 33277]
          Length = 411

 Score = 43.9 bits (102), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 66/139 (47%), Gaps = 33/139 (23%)

Query: 9   SRNVSQEDADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKAR---AEALD----- 55
           + N+ +ED    L RP  ++EF      GQ +A   L V +     R    E  D     
Sbjct: 55  TNNLKRED----LPRPIEIKEFLDSYVIGQDDAKRFLSVAVYNHYKRLLQQEDSDGVEIE 110

Query: 56  --HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL------ 103
             +++ VGP G GKT LA+ +A+ L V F      V+ +AG    D+ ++LT L      
Sbjct: 111 KSNIIMVGPTGTGKTLLARTIAKMLHVPFAVVDATVLTEAGYVGEDIESILTRLLQAADY 170

Query: 104 ----EDRDVLFIDEIHRLS 118
                +R ++FIDEI +++
Sbjct: 171 DVKQAERGIVFIDEIDKIA 189


>gi|332653692|ref|ZP_08419436.1| ATP-dependent metalloprotease FtsH [Ruminococcaceae bacterium D16]
 gi|332516778|gb|EGJ46383.1| ATP-dependent metalloprotease FtsH [Ruminococcaceae bacterium D16]
          Length = 643

 Score = 43.5 bits (101), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 39/66 (59%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDR------DV 108
           VL VGPPG GKT +A+ VA E GV+F S SG   V    G  A+ + +L D+       +
Sbjct: 224 VLLVGPPGTGKTLIAKAVAGEAGVHFLSISGSDFVELYVGVGASRVRDLFDQAKKEAPAI 283

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 284 VFIDEI 289


>gi|306820901|ref|ZP_07454521.1| AAA family ATPase [Eubacterium yurii subsp. margaretiae ATCC 43715]
 gi|304551015|gb|EFM38986.1| AAA family ATPase [Eubacterium yurii subsp. margaretiae ATCC 43715]
          Length = 424

 Score = 43.5 bits (101), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 73/147 (49%), Gaps = 16/147 (10%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           L+RP  L++  GQ E  +   + I+ A +R   + +++F G PG+GKTT+A+++A    +
Sbjct: 13  LVRPHKLQDVFGQ-EHITAKGMIIDMAISRNN-IPNMIFYGVPGVGKTTVAKIIAENTTM 70

Query: 81  ---NFRSTSGPVIAKAGDLAALLTNLED-----RDVLFIDEIHRLSIIVEEILYPAMEDF 132
               F +T      K  D+  ++ +  D     R +++IDE+   +   +++L   +E  
Sbjct: 71  PIHMFNATH----CKTDDVRKVILSYTDGIFKQRPLIYIDELQNFNKKQQQMLLDYIETG 126

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLI 157
           Q+  +    E P     K  LSR  ++
Sbjct: 127 QIGFIGATTENPYQYIYKALLSRLIVL 153


>gi|302672248|ref|YP_003832208.1| AAA family ATPase [Butyrivibrio proteoclasticus B316]
 gi|302396721|gb|ADL35626.1| ATPase AAA family [Butyrivibrio proteoclasticus B316]
          Length = 400

 Score = 43.5 bits (101), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 111/273 (40%), Gaps = 62/273 (22%)

Query: 40  LKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVAR---ELGVNFRST--- 85
           L  F++  KAR +        +L H++F G PG GKTT+A+++AR   ++GV  +     
Sbjct: 140 LAAFVKVQKARQDQGLKSVPVSL-HLVFTGNPGTGKTTVARIIARIYKQIGVLSKGQLVE 198

Query: 86  ---SGPVIAKAGDLAALLTNLEDR---DVLFIDEIHRLSIIVE-------EILYPAMEDF 132
              SG V    G  A   +    +    VLFIDE + LS   +       + +  AMED 
Sbjct: 199 VDRSGLVAGYVGQTAIKTSEQIKKAKGGVLFIDEAYALSQKDDAFGQEAIDTILKAMEDN 258

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATT---RVGLLTNP-LQDRFGIPIRLNFYEIEDL 188
           + D +V                 ++A  T   +  + +NP L+ RF   I    Y I++L
Sbjct: 259 RDDFVV-----------------IVAGYTEPMKKFIESNPGLKSRFNKYIEFPDYNIDEL 301

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           + I           V ++   +I         I  + +  + +FA     + +  EI   
Sbjct: 302 EEIFYMNCDKYDYKVDEDVKHQI------RALITAKKIENIDNFANAREVRNLFEEIITN 355

Query: 249 ALLRLAI-------DKMGFDQLDLRYLTMIARN 274
              R++        D M   + DL  L++IA N
Sbjct: 356 QARRISTIENPTGNDMMTILREDLEDLSIIADN 388


>gi|227829289|ref|YP_002831068.1| TIP49 domain protein [Sulfolobus islandicus L.S.2.15]
 gi|284996646|ref|YP_003418413.1| TIP49-like protein [Sulfolobus islandicus L.D.8.5]
 gi|227455736|gb|ACP34423.1| TIP49 domain protein [Sulfolobus islandicus L.S.2.15]
 gi|284444541|gb|ADB86043.1| TIP49-like protein [Sulfolobus islandicus L.D.8.5]
          Length = 452

 Score = 43.5 bits (101), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 28/50 (56%)

Query: 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
            GQ EA     V ++  K    +   +LFVGPPG GKT LA  +ARELG
Sbjct: 39 LVGQAEAREAAGVVVQLIKQGKMSGKGILFVGPPGTGKTALAVAIARELG 88


>gi|295672323|ref|XP_002796708.1| peroxisomal biogenesis factor 6 [Paracoccidioides brasiliensis Pb01]
 gi|226283688|gb|EEH39254.1| peroxisomal biogenesis factor 6 [Paracoccidioides brasiliensis Pb01]
          Length = 1450

 Score = 43.5 bits (101), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%)

Query: 41   KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
            ++F +  K R+     +LF GPPG GKT LA+ +A E  +NF S  GP
Sbjct: 1008 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 1051


>gi|198412134|ref|XP_002122137.1| PREDICTED: similar to valosin-containing protein, partial [Ciona
           intestinalis]
          Length = 256

 Score = 43.5 bits (101), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP  +    G+  A +  + D+       V
Sbjct: 188 VLFYGPPGCGKTLLAKAIANECQANFISIKGPEMLTMWFGESEANVREVFDKARQAAPCV 247

Query: 109 LFIDEIHRL 117
           LF DE+  +
Sbjct: 248 LFFDELDSI 256



 Score = 36.6 bits (83), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 94  ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRRAFEEAEKNAPAI 153

Query: 109 LFIDEIHRLS 118
           +FIDE+  ++
Sbjct: 154 IFIDELDAIA 163


>gi|254168504|ref|ZP_04875348.1| ATPase, AAA family protein [Aciduliprofundum boonei T469]
 gi|197622559|gb|EDY35130.1| ATPase, AAA family protein [Aciduliprofundum boonei T469]
          Length = 1009

 Score = 43.5 bits (101), Expect = 0.039,   Method: Composition-based stats.
 Identities = 36/99 (36%), Positives = 48/99 (48%), Gaps = 9/99 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF-RS 84
           TLE+     E    ++  IE    R      VLF GPPG+GKT +A+ +A ELG    + 
Sbjct: 757 TLEDVILDEETMEEIRDIIE--DVRDGEATSVLFYGPPGVGKTRIAEAMAGELGYELIKI 814

Query: 85  TSGPVIAK-AGDLAALLTNLED-----RDVLFIDEIHRL 117
           T   +++K  G+    L    D     R VLFIDEI  L
Sbjct: 815 TPSEILSKWVGESEKNLKEYFDKAKNGRVVLFIDEIDGL 853


>gi|168022662|ref|XP_001763858.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162684863|gb|EDQ71262.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 456

 Score = 43.5 bits (101), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 36/69 (52%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK-----AGDLAALLTNLEDR---DV 108
           VL  GPPG GKT LA+ VA E G NF + +G  I       A  L   L +L  +    V
Sbjct: 193 VLLFGPPGTGKTLLAKAVATEAGANFINITGSTITSKWFGDAEKLTKALFSLARKLSPAV 252

Query: 109 LFIDEIHRL 117
           +F+DE+  L
Sbjct: 253 IFVDEVDSL 261


>gi|238917376|ref|YP_002930893.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Eubacterium
           eligens ATCC 27750]
 gi|259491257|sp|C4Z1T5|CLPX_EUBE2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238872736|gb|ACR72446.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Eubacterium
           eligens ATCC 27750]
          Length = 422

 Score = 43.5 bits (101), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 62/129 (48%), Gaps = 28/129 (21%)

Query: 18  DISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKAR---AEALD------HVLFVGPP 63
           +I+LL+P+ ++EF      GQ EA   L V +     R      LD      ++L +GP 
Sbjct: 64  NINLLKPKQIKEFLDDYVIGQDEAKKVLAVAVYNHYKRIMSQSDLDVELQKSNILMLGPT 123

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---EDRDV-------L 109
           G GKT LAQ +AR L V F       + +AG    D+  +L  L    D DV       +
Sbjct: 124 GSGKTFLAQNLARLLNVPFAIADATTLTEAGYVGEDVENILLKLIQAADYDVEKAQYGII 183

Query: 110 FIDEIHRLS 118
           +IDEI +++
Sbjct: 184 YIDEIDKIT 192


>gi|126348248|emb|CAJ89969.1| putative sporulation protein K-like protein [Streptomyces ambofaciens
            ATCC 23877]
          Length = 1107

 Score = 43.5 bits (101), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 74/169 (43%), Gaps = 38/169 (22%)

Query: 55   DHVLFVGPPGLGKTTLAQVVAR---ELGVNFRSTSGPVIAKAGDLAALLTNLEDR----- 106
            +H++F GPPG GKTT+A++ AR    LGV  R  S   +A+A  +   + +   R     
Sbjct: 880  NHLVFSGPPGTGKTTVARLYARLLHSLGVLPRD-SLVEVARADLVGQYVGHTAQRTKDVF 938

Query: 107  -----DVLFIDEIHRLSIIVE---------EILYPAMEDFQLDLMVGEGPSARSVKINLS 152
                  VLF+DE + L+             + L   MED + +++V            + 
Sbjct: 939  TSALGGVLFVDEAYTLTPEGSSNDFGREAVDTLLKLMEDHRDEIVV----VVAGYTEEME 994

Query: 153  RFTLIAATTRVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
            RF          L +NP L  RF   +R   Y  ++L TIV R A  +G
Sbjct: 995  RF----------LASNPGLTSRFSKFVRFEDYSTDELVTIVSRHAAASG 1033



 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 70/161 (43%), Gaps = 38/161 (23%)

Query: 56  HVLFVGPPGLGKTTLAQV---VARELGVNFRSTSGPVIAKAGDLAALLTNLEDR------ 106
           H++F GPPG GKTT+A++   +  +LGV  RS     +A+A  +A ++     +      
Sbjct: 601 HLIFAGPPGTGKTTVARLYGGILADLGV-LRSGHLVEVARADLVAQVIGGTAIKTTEAFT 659

Query: 107 ----DVLFIDEIHRLSIIVE---------EILYPAMEDFQLDLMVGEGPSARSVKINLSR 153
                VLFIDE + L++            + L   MED + D++V     A      +  
Sbjct: 660 SALGGVLFIDEAYTLTVEGSSNDFGREAVDTLLKLMEDHRDDVVV----VAAGYSEQMES 715

Query: 154 FTLIAATTRVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQ 193
           F          L  NP L  RF   +    Y +++L TI +
Sbjct: 716 F----------LTANPGLASRFSRTVEFGNYAVQELVTITE 746


>gi|86607410|ref|YP_476173.1| AAA family ATPase [Synechococcus sp. JA-3-3Ab]
 gi|86555952|gb|ABD00910.1| ATPase, AAA family [Synechococcus sp. JA-3-3Ab]
          Length = 629

 Score = 43.5 bits (101), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 55/118 (46%), Gaps = 27/118 (22%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           ++ V QE  + SLL P   E+                   A+A+A   +L  GPPG GKT
Sbjct: 380 AKQVLQEAIEGSLLHPELYEQ-------------------AQAQAPKGILLSGPPGTGKT 420

Query: 69  TLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDRD------VLFIDEIHRLS 118
            LA+ +A +   NF + SGP +++K  G     +  L  R       V+FIDEI  L+
Sbjct: 421 LLAKAIASQAKANFIAVSGPELLSKWVGSSEQAVRELFARARQCAPCVIFIDEIDTLA 478



 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDRD------V 108
           VL VGPPG GKT  A+ +A  LGVN+ +  GP +I K  G+  A L  + ++       +
Sbjct: 143 VLLVGPPGTGKTLTARALAESLGVNYIALVGPELIGKYYGEAEARLRQVFEKAAKSAPCL 202

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 203 VFIDEIDAL 211


>gi|331268211|ref|YP_004394703.1| Sporulation protease LonC [Clostridium botulinum BKT015925]
 gi|329124761|gb|AEB74706.1| Sporulation protease LonC [Clostridium botulinum BKT015925]
          Length = 635

 Score = 43.5 bits (101), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 81/211 (38%), Gaps = 60/211 (28%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           LS N+      +S+LRP++  E  GQ  A  +L      +K  +    H++  GPPG+GK
Sbjct: 161 LSNNI------LSMLRPQSFSEIVGQERAIKSL-----VSKLASPYPQHIILYGPPGVGK 209

Query: 68  TTLAQVVAREL------------------GVNFR------------STSGPVIAKAG-DL 96
           TT A++   E+                  G   R            S   P+   +  DL
Sbjct: 210 TTAARLALEEVKKIKHTPFDEDGKFVEVDGTTLRWDPREITNPLLGSVHDPIYQGSKRDL 269

Query: 97  AAL--------LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG-EGPSARSV 147
           A +        L       VLFIDEI  L  I++  L   +ED +++       P   ++
Sbjct: 270 AEIGVPEPKPGLVTEAHGGVLFIDEIGELDDILQNKLLKVLEDKRVEFSSSYYDPDDENI 329

Query: 148 KINL---------SRFTLIAATTRVGLLTNP 169
              +         + F LI ATTR     NP
Sbjct: 330 PKYIKYLFENGAPADFVLIGATTREPKDINP 360


>gi|327305303|ref|XP_003237343.1| peroxisomal biogenesis factor 6 [Trichophyton rubrum CBS 118892]
 gi|326460341|gb|EGD85794.1| peroxisomal biogenesis factor 6 [Trichophyton rubrum CBS 118892]
          Length = 1422

 Score = 43.5 bits (101), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%)

Query: 41   KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
            ++F +  K R+     +LF GPPG GKT LA+ +A E  +NF S  GP
Sbjct: 1080 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 1123


>gi|317056461|ref|YP_004104928.1| AAA ATPase central domain-containing protein [Ruminococcus albus 7]
 gi|315448730|gb|ADU22294.1| AAA ATPase central domain protein [Ruminococcus albus 7]
          Length = 426

 Score = 43.5 bits (101), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 70/146 (47%), Gaps = 16/146 (10%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP+TL+E  GQ   +     L+  IE+       + +++F GP G+GKTT+A+ +A   
Sbjct: 9   IRPKTLDEIVGQPHLMGVGKPLRRIIESG-----TIPNLIFYGPSGVGKTTIARFIAENA 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE-----DRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
            +     +G   A   D+  ++   E     +  +L++DEI  L+   ++ L   +E+ +
Sbjct: 64  NMTMFKLNG-TSASVADIKQIIAETEMIGGMNGILLYLDEIQYLNKKQQQSLLEYIENGK 122

Query: 134 LDLMVG--EGPSARSVKINLSRFTLI 157
           + L+    E P        +SR T+ 
Sbjct: 123 ITLISSTTENPYFYVYNAIISRSTVF 148


>gi|119195945|ref|XP_001248576.1| peroxisomal biogenesis factor 6 [Coccidioides immitis RS]
          Length = 1383

 Score = 43.5 bits (101), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%)

Query: 41   KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
            ++F +  K R+     +LF GPPG GKT LA+ +A E  +NF S  GP
Sbjct: 1032 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 1075


>gi|20808757|ref|NP_623928.1| ATP-dependent Zn protease [Thermoanaerobacter tengcongensis MB4]
 gi|20517401|gb|AAM25532.1| ATP-dependent Zn proteases [Thermoanaerobacter tengcongensis MB4]
          Length = 611

 Score = 43.5 bits (101), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 39/95 (41%), Positives = 47/95 (49%), Gaps = 11/95 (11%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           EE    VE     K FIE     A     VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 171 EELQEIVEFLKYPKKFIELG---ARIPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISG 227

Query: 88  PVIAK--AGDLAALLTNLEDRD------VLFIDEI 114
               +   G  AA + +L ++       ++FIDEI
Sbjct: 228 SDFVEMFVGVGAARVRDLFEQAKKNAPCIVFIDEI 262


>gi|323697669|ref|ZP_08109581.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfovibrio
           sp. ND132]
 gi|323457601|gb|EGB13466.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfovibrio
           desulfuricans ND132]
          Length = 418

 Score = 43.5 bits (101), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 66/144 (45%), Gaps = 32/144 (22%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEF-----TGQVEACSNL---------KVFIEAAKARAE 52
           +    +S+E  D  LL P+ ++E       GQ +A   L         +VF  AA +  +
Sbjct: 47  MAQETISEEFEDGRLLPPQEIKELLDQYVIGQEQAKKILSVAVHNHYKRVFYAAANSGGD 106

Query: 53  ALD----HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD--------LAALL 100
            ++    ++L +GP G GKT LAQ +AR L V F       + +AG         L  LL
Sbjct: 107 DVEIDKSNILLIGPTGSGKTLLAQTLARVLKVPFAIADATTLTEAGYVGEDVENILVQLL 166

Query: 101 TNLE------DRDVLFIDEIHRLS 118
            N +       R +++IDEI +++
Sbjct: 167 QNADYDIDAASRGIIYIDEIDKVA 190


>gi|261203255|ref|XP_002628841.1| peroxisomal biogenesis factor 6 [Ajellomyces dermatitidis SLH14081]
 gi|239586626|gb|EEQ69269.1| peroxisomal biogenesis factor 6 [Ajellomyces dermatitidis SLH14081]
          Length = 1497

 Score = 43.5 bits (101), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%)

Query: 41   KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
            ++F +  K R+     +LF GPPG GKT LA+ +A E  +NF S  GP
Sbjct: 1058 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 1101


>gi|226288260|gb|EEH43772.1| peroxisomal biogenesis factor 6 [Paracoccidioides brasiliensis Pb18]
          Length = 1477

 Score = 43.5 bits (101), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%)

Query: 41   KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
            ++F +  K R+     +LF GPPG GKT LA+ +A E  +NF S  GP
Sbjct: 1035 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 1078


>gi|229816586|ref|ZP_04446885.1| hypothetical protein COLINT_03644 [Collinsella intestinalis DSM
           13280]
 gi|229807921|gb|EEP43724.1| hypothetical protein COLINT_03644 [Collinsella intestinalis DSM
           13280]
          Length = 747

 Score = 43.5 bits (101), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108
           VL VGPPG GKT LA+ VA E GV F + SG       V   A  +  L  N +++   +
Sbjct: 250 VLLVGPPGTGKTLLAKAVAGEAGVPFFTISGSEFVEMFVGVGASRVRDLFKNAKEQSPSI 309

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 310 IFIDEI 315


>gi|15920793|ref|NP_376462.1| TATA-binding protein-interacting protein [Sulfolobus tokodaii
          str. 7]
 gi|15621577|dbj|BAB65571.1| 452aa long hypothetical TATA-binding protein-interacting protein
          [Sulfolobus tokodaii str. 7]
          Length = 452

 Score = 43.5 bits (101), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 28/50 (56%)

Query: 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
            GQ EA     + ++  K    A   VLFVGPPG GKT LA  +A+ELG
Sbjct: 39 LVGQTEAREAAGIVVQLIKQGKMAGKGVLFVGPPGTGKTALAVAIAKELG 88


>gi|320040362|gb|EFW22295.1| peroxisome biosynthesis protein Peroxin-6 [Coccidioides posadasii
            str. Silveira]
          Length = 1383

 Score = 43.5 bits (101), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%)

Query: 41   KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
            ++F +  K R+     +LF GPPG GKT LA+ +A E  +NF S  GP
Sbjct: 1032 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 1075


>gi|313673002|ref|YP_004051113.1| ATP-dependent proteinase [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939758|gb|ADR18950.1| ATP-dependent proteinase [Calditerrivibrio nitroreducens DSM 19672]
          Length = 768

 Score = 43.5 bits (101), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 91/232 (39%), Gaps = 76/232 (32%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF------------------RSTSGPV-------IA 91
           + FVGPPG+GKT+LA+ +A  LG  F                  R+  G +       I 
Sbjct: 348 ICFVGPPGVGKTSLAKSIAESLGRRFVRVSLGGLRDEAEIRGHRRTYIGALPGKIVQGIK 407

Query: 92  KAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD----LMVGEGPSAR-- 145
           KAG +           V  +DEI +LS            DF+ D    L+    P     
Sbjct: 408 KAGSMNP---------VFLLDEIDKLS-----------SDFRGDPASALLEALDPEQNIN 447

Query: 146 ------SVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT----IVQRG 195
                  V+++LS+   I    R+  + +PL+DR  +     + E+E L      I+ + 
Sbjct: 448 FVDHYLEVELDLSKVFFITTANRLDTIPHPLRDRMEVINLSGYTELEKLHIAKDFIIPKQ 507

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIA-GRLLRRVRDFAEVAHAKTITREIA 246
            K+                ++G  +I  G +L  +R + + A  + + REIA
Sbjct: 508 LKIHN--------------AQGKIKITDGAILDVIRHYTKEAGVRNLEREIA 545


>gi|315046408|ref|XP_003172579.1| peroxisomal biogenesis factor 6 [Arthroderma gypseum CBS 118893]
 gi|311342965|gb|EFR02168.1| peroxisomal biogenesis factor 6 [Arthroderma gypseum CBS 118893]
          Length = 1417

 Score = 43.5 bits (101), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%)

Query: 41   KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
            ++F +  K R+     +LF GPPG GKT LA+ +A E  +NF S  GP
Sbjct: 1077 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 1120


>gi|259486137|tpe|CBF83738.1| TPA: microbody (peroxisome) biogenesis protein peroxin 6 (Eurofung)
            [Aspergillus nidulans FGSC A4]
          Length = 1476

 Score = 43.5 bits (101), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%)

Query: 41   KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
            ++F +  K R+     +LF GPPG GKT LA+ +A E  +NF S  GP
Sbjct: 1049 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 1092


>gi|86610266|ref|YP_479028.1| AAA family ATPase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558808|gb|ABD03765.1| ATPase, AAA family [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 628

 Score = 43.5 bits (101), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 8/79 (10%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLED 105
           +A+A+A   +L  GPPG GKT LA+ +A +   NF + SGP +++K  G     +  L  
Sbjct: 399 QAQAQAPKGILLSGPPGTGKTLLAKAIASQAKANFIAVSGPELLSKWVGSSEQAVRELFA 458

Query: 106 RD------VLFIDEIHRLS 118
           R       V+FIDEI  L+
Sbjct: 459 RARQCAPCVIFIDEIDTLA 477



 Score = 43.1 bits (100), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 40/69 (57%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDRD------V 108
           VL VGPPG GKT  A+ +A  LGVN+ +  GP +I K  G+  A L  L ++       +
Sbjct: 142 VLLVGPPGTGKTLTARALAESLGVNYIAIVGPELIGKYYGEAEARLRQLFEKAAKSAPCL 201

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 202 VFIDEIDAL 210


>gi|310794195|gb|EFQ29656.1| ATPase [Glomerella graminicola M1.001]
          Length = 501

 Score = 43.5 bits (101), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 32/57 (56%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEI 114
           LF GPPG GK++L+  +A E G++      P +A   DL  +   +  R V+ +++I
Sbjct: 266 LFYGPPGTGKSSLSVAIAGEFGLDMYEVKIPSVATDADLEQMFQEIPPRCVVLLEDI 322


>gi|296331633|ref|ZP_06874102.1| class III heat-shock ATP-dependent LonA protease [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305675408|ref|YP_003867080.1| class III heat-shock ATP-dependent LonA protease [Bacillus subtilis
           subsp. spizizenii str. W23]
 gi|296151228|gb|EFG92108.1| class III heat-shock ATP-dependent LonA protease [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305413652|gb|ADM38771.1| class III heat-shock ATP-dependent LonA protease [Bacillus subtilis
           subsp. spizizenii str. W23]
          Length = 774

 Score = 43.5 bits (101), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 76/197 (38%), Gaps = 58/197 (29%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF------------------RSTSGPV-------IA 91
           +   GPPG+GKT+LA+ +A+ LG  F                  R+  G +       + 
Sbjct: 350 LCLAGPPGVGKTSLAKSIAKSLGREFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMK 409

Query: 92  KAGDLAALLTNLEDRDVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPS 143
           KAG L           V  +DEI ++        S  + E+L P       D  + E   
Sbjct: 410 KAGKLNP---------VFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSTFSDHYIEE--- 457

Query: 144 ARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL---------KTIVQR 194
                 +LS+   IA    +  +  PL+DR  I     + E+E L         K I + 
Sbjct: 458 ----TFDLSKVLFIATANNLATIPGPLRDRMEIINIAGYTEVEKLEIVKDHLLPKQIKEH 513

Query: 195 GAKLTGLAVTDEAACEI 211
           G K + L + D+A  +I
Sbjct: 514 GLKKSNLQLRDQAILDI 530


>gi|302655400|ref|XP_003019489.1| hypothetical protein TRV_06488 [Trichophyton verrucosum HKI 0517]
 gi|291183216|gb|EFE38844.1| hypothetical protein TRV_06488 [Trichophyton verrucosum HKI 0517]
          Length = 1118

 Score = 43.5 bits (101), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%)

Query: 41  KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           ++F +  K R+     +LF GPPG GKT LA+ +A E  +NF S  GP
Sbjct: 775 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 818


>gi|303321756|ref|XP_003070872.1| peroxin-6, putative [Coccidioides posadasii C735 delta SOWgp]
 gi|240110569|gb|EER28727.1| peroxin-6, putative [Coccidioides posadasii C735 delta SOWgp]
          Length = 1383

 Score = 43.5 bits (101), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%)

Query: 41   KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
            ++F +  K R+     +LF GPPG GKT LA+ +A E  +NF S  GP
Sbjct: 1032 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 1075


>gi|240273533|gb|EER37053.1| peroxisomal biogenesis factor 6 [Ajellomyces capsulatus H143]
          Length = 1471

 Score = 43.5 bits (101), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 22/32 (68%)

Query: 57   VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
            +LF GPPG GKT LA+ +A E  +NF S  GP
Sbjct: 1036 ILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 1067


>gi|239608337|gb|EEQ85324.1| peroxisomal biogenesis factor 6 [Ajellomyces dermatitidis ER-3]
          Length = 1495

 Score = 43.5 bits (101), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%)

Query: 41   KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
            ++F +  K R+     +LF GPPG GKT LA+ +A E  +NF S  GP
Sbjct: 1056 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 1099


>gi|227827645|ref|YP_002829425.1| replication factor C large subunit [Sulfolobus islandicus
          M.14.25]
 gi|229584849|ref|YP_002843351.1| replication factor C large subunit [Sulfolobus islandicus
          M.16.27]
 gi|259585252|sp|C3N5N1|RFCL_SULIA RecName: Full=Replication factor C large subunit; Short=RFC large
          subunit; AltName: Full=Clamp loader large subunit
 gi|259585254|sp|C3MVD2|RFCL_SULIM RecName: Full=Replication factor C large subunit; Short=RFC large
          subunit; AltName: Full=Clamp loader large subunit
 gi|227459441|gb|ACP38127.1| AAA ATPase central domain protein [Sulfolobus islandicus M.14.25]
 gi|228019899|gb|ACP55306.1| AAA ATPase central domain protein [Sulfolobus islandicus M.16.27]
          Length = 405

 Score = 43.5 bits (101), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 6/61 (9%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEA---AKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
          RPR+L++   Q  A   L+ +IE+    K  A+A   VL  GPPG+GKTTLA+ +A +  
Sbjct: 9  RPRSLKDVENQDGAKKELQEWIESWLNGKPNAKA---VLLHGPPGVGKTTLAEALAHDYN 65

Query: 80 V 80
          +
Sbjct: 66 L 66


>gi|160933739|ref|ZP_02081127.1| hypothetical protein CLOLEP_02600 [Clostridium leptum DSM 753]
 gi|156867616|gb|EDO60988.1| hypothetical protein CLOLEP_02600 [Clostridium leptum DSM 753]
          Length = 660

 Score = 43.5 bits (101), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 39/95 (41%), Positives = 47/95 (49%), Gaps = 11/95 (11%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           EE    VE   N K F E     A     VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 189 EELREIVEFLKNPKRFNELG---ARIPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISG 245

Query: 88  PVIAK--AGDLAALLTNLEDRD------VLFIDEI 114
               +   G  A+ + +L D+       ++FIDEI
Sbjct: 246 SDFVEMFVGVGASRVRDLFDQAKKNSPCIIFIDEI 280


>gi|327349536|gb|EGE78393.1| peroxisomal biogenesis factor 6 [Ajellomyces dermatitidis ATCC 18188]
          Length = 1507

 Score = 43.5 bits (101), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%)

Query: 41   KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
            ++F +  K R+     +LF GPPG GKT LA+ +A E  +NF S  GP
Sbjct: 1068 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 1111


>gi|326472127|gb|EGD96136.1| peroxisomal biogenesis factor 6 [Trichophyton tonsurans CBS 112818]
          Length = 1420

 Score = 43.5 bits (101), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%)

Query: 41   KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
            ++F +  K R+     +LF GPPG GKT LA+ +A E  +NF S  GP
Sbjct: 1080 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 1123


>gi|296805920|ref|XP_002843784.1| peroxisomal biogenesis factor 6 [Arthroderma otae CBS 113480]
 gi|238845086|gb|EEQ34748.1| peroxisomal biogenesis factor 6 [Arthroderma otae CBS 113480]
          Length = 1417

 Score = 43.5 bits (101), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%)

Query: 41   KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
            ++F +  K R+     +LF GPPG GKT LA+ +A E  +NF S  GP
Sbjct: 1076 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 1119


>gi|227872254|ref|ZP_03990614.1| M41 family FtsH endopeptidase [Oribacterium sinus F0268]
 gi|227841901|gb|EEJ52171.1| M41 family FtsH endopeptidase [Oribacterium sinus F0268]
          Length = 649

 Score = 43.5 bits (101), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 37/65 (56%), Gaps = 8/65 (12%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDRD------VL 109
           L VGPPG GKT LA+ VA E GV F S SG   V    G  AA + +L D+       ++
Sbjct: 233 LLVGPPGTGKTMLAKAVAGEAGVPFFSISGSEFVEMYVGMGAAKVRDLFDQAKKKSPCII 292

Query: 110 FIDEI 114
           FIDEI
Sbjct: 293 FIDEI 297


>gi|238619813|ref|YP_002914639.1| replication factor C large subunit [Sulfolobus islandicus M.16.4]
 gi|259585253|sp|C4KHA7|RFCL_SULIK RecName: Full=Replication factor C large subunit; Short=RFC large
          subunit; AltName: Full=Clamp loader large subunit
 gi|238380883|gb|ACR41971.1| AAA ATPase central domain protein [Sulfolobus islandicus M.16.4]
          Length = 405

 Score = 43.5 bits (101), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 6/61 (9%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEA---AKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
          RPR+L++   Q  A   L+ +IE+    K  A+A   VL  GPPG+GKTTLA+ +A +  
Sbjct: 9  RPRSLKDVENQDGAKKELQEWIESWLNGKPNAKA---VLLHGPPGVGKTTLAEALAHDYN 65

Query: 80 V 80
          +
Sbjct: 66 L 66


>gi|227830341|ref|YP_002832121.1| replication factor C large subunit [Sulfolobus islandicus
          L.S.2.15]
 gi|229579158|ref|YP_002837556.1| replication factor C large subunit [Sulfolobus islandicus
          Y.G.57.14]
 gi|284997766|ref|YP_003419533.1| AAA ATPase, central domain protein [Sulfolobus islandicus
          L.D.8.5]
 gi|259585236|sp|C3MQ13|RFCL_SULIL RecName: Full=Replication factor C large subunit; Short=RFC large
          subunit; AltName: Full=Clamp loader large subunit
 gi|259585591|sp|C3NE95|RFCL_SULIY RecName: Full=Replication factor C large subunit; Short=RFC large
          subunit; AltName: Full=Clamp loader large subunit
 gi|227456789|gb|ACP35476.1| AAA ATPase central domain protein [Sulfolobus islandicus
          L.S.2.15]
 gi|228009872|gb|ACP45634.1| AAA ATPase central domain protein [Sulfolobus islandicus
          Y.G.57.14]
 gi|284445661|gb|ADB87163.1| AAA ATPase, central domain protein [Sulfolobus islandicus
          L.D.8.5]
          Length = 405

 Score = 43.5 bits (101), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 6/61 (9%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEA---AKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
          RPR+L++   Q  A   L+ +IE+    K  A+A   VL  GPPG+GKTTLA+ +A +  
Sbjct: 9  RPRSLKDVENQDGAKKELQEWIESWLNGKPNAKA---VLLHGPPGVGKTTLAEALAHDYN 65

Query: 80 V 80
          +
Sbjct: 66 L 66


>gi|254479639|ref|ZP_05092942.1| ATP-dependent metallopeptidase HflB subfamily protein
           [Carboxydibrachium pacificum DSM 12653]
 gi|214034424|gb|EEB75195.1| ATP-dependent metallopeptidase HflB subfamily protein
           [Carboxydibrachium pacificum DSM 12653]
          Length = 608

 Score = 43.5 bits (101), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 39/95 (41%), Positives = 47/95 (49%), Gaps = 11/95 (11%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           EE    VE     K FIE     A     VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 168 EELQEIVEFLKYPKKFIELG---ARIPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISG 224

Query: 88  PVIAK--AGDLAALLTNLEDRD------VLFIDEI 114
               +   G  AA + +L ++       ++FIDEI
Sbjct: 225 SDFVEMFVGVGAARVRDLFEQAKKNAPCIVFIDEI 259


>gi|71066497|ref|YP_265224.1| ATP-dependent protease ATP-binding subunit ClpX [Psychrobacter
           arcticus 273-4]
 gi|123647822|sp|Q4FQB8|CLPX_PSYA2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|71039482|gb|AAZ19790.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Psychrobacter
           arcticus 273-4]
          Length = 424

 Score = 43.5 bits (101), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 49/101 (48%), Gaps = 15/101 (14%)

Query: 33  QVEACSNLKVFIEAAKARAE-ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA 91
           Q  A  + K  I AA A  E A  ++L +GP G GKT LAQ +AR L V F       + 
Sbjct: 103 QTLANDSKKAKIGAADAMVELAKSNILLIGPTGSGKTLLAQTLARLLDVPFAMADATTLT 162

Query: 92  KAGDLAALLTNL-------EDRDV-------LFIDEIHRLS 118
           +AG +   + N+        D DV       ++IDEI ++S
Sbjct: 163 EAGYVGEDVENIVQKLLQASDYDVSKAEQGIIYIDEIDKIS 203


>gi|302507001|ref|XP_003015457.1| hypothetical protein ARB_06583 [Arthroderma benhamiae CBS 112371]
 gi|291179029|gb|EFE34817.1| hypothetical protein ARB_06583 [Arthroderma benhamiae CBS 112371]
          Length = 1423

 Score = 43.5 bits (101), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%)

Query: 41   KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
            ++F +  K R+     +LF GPPG GKT LA+ +A E  +NF S  GP
Sbjct: 1080 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 1123


>gi|225442523|ref|XP_002278786.1| PREDICTED: similar to cell division protein FtsH-like [Vitis
           vinifera]
          Length = 888

 Score = 43.5 bits (101), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDR--DV 108
           +L  GPPG+GKT LA+ VA E GVNF S S     +      A  + AL    ++    V
Sbjct: 458 ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRALYQEAKENAPSV 517

Query: 109 LFIDEI 114
           +FIDE+
Sbjct: 518 VFIDEL 523


>gi|331237454|ref|XP_003331384.1| hypothetical protein PGTG_12706 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309310374|gb|EFP86965.1| hypothetical protein PGTG_12706 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 818

 Score = 43.5 bits (101), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 521 VLFYGPPGTGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCV 580

Query: 109 LFIDEIHRLS 118
           +F DE+  ++
Sbjct: 581 MFFDELDSIA 590



 Score = 38.5 bits (88), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 248 ILMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNAPAI 307

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 308 IFIDEIDSIA 317


>gi|303232522|ref|ZP_07319208.1| DNA polymerase III, subunit gamma and tau [Atopobium vaginae
           PB189-T1-4]
 gi|302481309|gb|EFL44383.1| DNA polymerase III, subunit gamma and tau [Atopobium vaginae
           PB189-T1-4]
          Length = 679

 Score = 43.5 bits (101), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 48/106 (45%), Gaps = 10/106 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPRT  E  GQ    + L   +   K     + H  LF GP G GKTT+A+++A+ L   
Sbjct: 9   RPRTFTEVVGQQHVVATLTHAVTHNK-----IAHAYLFCGPRGTGKTTMARLLAKALTCT 63

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI--IVEEIL 125
             +   P    A D    +   +  DVL +D   R  +  + EEIL
Sbjct: 64  HTTNHLPC--GACDACLQIARAQHPDVLELDAASRTGVDNVREEIL 107


>gi|297836828|ref|XP_002886296.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297332136|gb|EFH62555.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 718

 Score = 43.5 bits (101), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 42/85 (49%), Gaps = 9/85 (10%)

Query: 43  FIEAAKARAEALDH-VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAAL 99
           F E  K     LD   L  GPPG+GKT +AQ VA E G N+    GP +++K  GD    
Sbjct: 472 FPEQCKGFEFCLDTGFLLFGPPGVGKTLVAQAVANEAGANYIHVEGPELLSKYVGDTEKA 531

Query: 100 LTNLEDRD------VLFIDEIHRLS 118
           +  L  R       ++F DE+  L+
Sbjct: 532 IRELFSRARRCSPCIVFFDEVDALT 556


>gi|294846008|gb|ADF43166.1| RFC4m [Chlamydomonas reinhardtii]
          Length = 332

 Score = 43.5 bits (101), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+ + E   Q E  + L   +E A      L H+LF GPPG GKT+ A  +AR+L
Sbjct: 11 RPKNVSEVAYQEEVVNTLTRALETAN-----LPHLLFYGPPGTGKTSTALAIARQL 61


>gi|302890333|ref|XP_003044051.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256724970|gb|EEU38338.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 485

 Score = 43.5 bits (101), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 32/57 (56%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEI 114
           LF GPPG GK++L+  +A E G++      P +A   DL  +   +  R V+ +++I
Sbjct: 265 LFYGPPGTGKSSLSVAIAGEFGLDLYEVKIPSVATDADLEQMFQEIPPRCVVLLEDI 321


>gi|159476624|ref|XP_001696411.1| DNA replication factor C complex subunit 4 [Chlamydomonas
          reinhardtii]
 gi|158282636|gb|EDP08388.1| DNA replication factor C complex subunit 4 [Chlamydomonas
          reinhardtii]
 gi|294845967|gb|ADF43126.1| RFC4p [Chlamydomonas reinhardtii]
          Length = 332

 Score = 43.5 bits (101), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+ + E   Q E  + L   +E A      L H+LF GPPG GKT+ A  +AR+L
Sbjct: 11 RPKNVSEVAYQEEVVNTLTRALETAN-----LPHLLFYGPPGTGKTSTALAIARQL 61


>gi|146342770|ref|YP_001207818.1| cell division protein FtsH-like protein [Bradyrhizobium sp. ORS278]
 gi|146195576|emb|CAL79603.1| Cell division protein ftsH homolog (ATP-dependent zinc-metallo
           protease) [Bradyrhizobium sp. ORS278]
          Length = 618

 Score = 43.5 bits (101), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 64/135 (47%), Gaps = 18/135 (13%)

Query: 1   MMDREG---LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLK---VFIEAAKARAEAL 54
           +MDR+G   L+S   S+    +      T  +  G  EA   L+    F++  K+     
Sbjct: 132 VMDRQGFGGLMSIGKSRAKVYVETDTKVTFADVAGVDEAKFELQEVVQFLKDPKSYGRLG 191

Query: 55  DHV----LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD- 107
            HV    L VGPPG GKT LA+ VA E GV F S SG    +   G  AA + +L ++  
Sbjct: 192 AHVPKGILLVGPPGTGKTLLARAVAGEAGVAFFSISGSEFVEMFVGVGAARVRDLFEQAR 251

Query: 108 -----VLFIDEIHRL 117
                ++FIDE+  L
Sbjct: 252 KAAPCIIFIDELDAL 266


>gi|169767894|ref|XP_001818418.1| peroxisomal biogenesis factor 6 [Aspergillus oryzae RIB40]
 gi|83766273|dbj|BAE56416.1| unnamed protein product [Aspergillus oryzae]
          Length = 1476

 Score = 43.5 bits (101), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%)

Query: 41   KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
            ++F +  K R+     +LF GPPG GKT LA+ +A E  +NF S  GP
Sbjct: 1053 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 1096


>gi|326477010|gb|EGE01020.1| peroxisomal biogenesis factor 6 [Trichophyton equinum CBS 127.97]
          Length = 1420

 Score = 43.5 bits (101), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%)

Query: 41   KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
            ++F +  K R+     +LF GPPG GKT LA+ +A E  +NF S  GP
Sbjct: 1080 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 1123


>gi|326437583|gb|EGD83153.1| ATPase AFG2 protein [Salpingoeca sp. ATCC 50818]
          Length = 852

 Score = 43.5 bits (101), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 49/97 (50%), Gaps = 12/97 (12%)

Query: 27  LEEFTGQVE-ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRST 85
           L+E    VE A  N ++F +   A       VL VGPPG GKT +A+ VARE G +    
Sbjct: 302 LQEVRDTVELALQNPQIFTQYGLAPPRG---VLLVGPPGTGKTLIARAVARECGADVTVI 358

Query: 86  SGP-VIAKAG-----DLAALLTNL--EDRDVLFIDEI 114
           +GP +I++        L A+        R ++F+DEI
Sbjct: 359 NGPEIISRTYGETERSLKAIFAKAAPSGRHLIFVDEI 395


>gi|269123535|ref|YP_003306112.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Streptobacillus moniliformis DSM 12112]
 gi|268314861|gb|ACZ01235.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Streptobacillus moniliformis DSM 12112]
          Length = 410

 Score = 43.5 bits (101), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 62/146 (42%), Gaps = 30/146 (20%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEE-----FTGQVEACSNLKVFIEAAKARAEALD-- 55
           DR+  L    +    D +LL+P+ ++E       GQ +A   L V +     R   LD  
Sbjct: 39  DRDIELGYETTSNFDDFNLLKPKQIKEKLDEYIIGQEQAKKVLSVAVYNHFKRLSILDKV 98

Query: 56  ---------HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTN---- 102
                    ++L +GP G GKT LAQ +A+ L V         I +AG +   + N    
Sbjct: 99  DNDIEMQKSNILLIGPTGSGKTLLAQTLAKILDVPLAIADATTITEAGYVGDDVENVLLK 158

Query: 103 ----------LEDRDVLFIDEIHRLS 118
                     L  R +++IDEI +++
Sbjct: 159 LIKAADYDIQLAQRGIIYIDEIDKIA 184


>gi|255088619|ref|XP_002506232.1| predicted protein [Micromonas sp. RCC299]
 gi|226521503|gb|ACO67490.1| predicted protein [Micromonas sp. RCC299]
          Length = 329

 Score = 43.5 bits (101), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RPR + +   Q E    L+  +E A      + H+LF GPPG GKTT A  + R+L
Sbjct: 13 RPRNINDVAHQEEVVRTLEKALETAN-----MPHMLFYGPPGTGKTTCALAICRQL 63


>gi|119492549|ref|XP_001263640.1| peroxisome assembly factor-2 (peroxisomal-type atpase 1) [Neosartorya
            fischeri NRRL 181]
 gi|119411800|gb|EAW21743.1| peroxisome assembly factor-2 (peroxisomal-type atpase 1) [Neosartorya
            fischeri NRRL 181]
          Length = 1442

 Score = 43.5 bits (101), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%)

Query: 41   KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
            ++F +  K R+     +LF GPPG GKT LA+ +A E  +NF S  GP
Sbjct: 1050 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 1093


>gi|323474695|gb|ADX85301.1| AAA ATPase central domain protein [Sulfolobus islandicus REY15A]
 gi|323477429|gb|ADX82667.1| AAA ATPase central domain protein [Sulfolobus islandicus HVE10/4]
          Length = 405

 Score = 43.5 bits (101), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 6/61 (9%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEA---AKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
          RPR+L++   Q  A   L+ +IE+    K  A+A   VL  GPPG+GKTTLA+ +A +  
Sbjct: 9  RPRSLKDVENQDGAKKELQEWIESWLNGKPNAKA---VLLHGPPGVGKTTLAEALAHDYN 65

Query: 80 V 80
          +
Sbjct: 66 L 66


>gi|298713722|emb|CBJ48913.1| flagellar associated protein [Ectocarpus siliculosus]
          Length = 932

 Score = 43.5 bits (101), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ VA +   NF S  GP
Sbjct: 630 VLFYGPPGCGKTLLAKAVANQCNANFISVKGP 661



 Score = 37.0 bits (84), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 60/139 (43%), Gaps = 38/139 (27%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AG----DLAALLTNLEDR--DV 108
           VL  GPPG GKT LA+ V  E G +  + +GP I    AG    +L       E+    +
Sbjct: 358 VLLYGPPGCGKTLLARAVIAETGAHLVTVNGPDIMGKVAGESETNLRKAFEEAEENSPSI 417

Query: 109 LFIDEIHRLSI------------IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTL 156
           +FIDE+  ++             IV ++L          LM G  P+        S   +
Sbjct: 418 VFIDEVDSIAPKRDKAGGETEKRIVSQLLT---------LMDGIKPT--------SHVVV 460

Query: 157 IAATTRVGLLTNPLQDRFG 175
           IAAT R  ++ +P   RFG
Sbjct: 461 IAATNRPNVI-DPALRRFG 478


>gi|301121234|ref|XP_002908344.1| ribosome biogenesis ATPase RIX7 [Phytophthora infestans T30-4]
 gi|262103375|gb|EEY61427.1| ribosome biogenesis ATPase RIX7 [Phytophthora infestans T30-4]
          Length = 800

 Score = 43.5 bits (101), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ +A E G NF S  GP
Sbjct: 516 VLLYGPPGCGKTLLAKAIAHESGANFISIKGP 547



 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 32/66 (48%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDR------DV 108
           VL  GPPG GK+ LA  +A E G  F   S P  V   +G+    L  L D        +
Sbjct: 188 VLLHGPPGTGKSMLAHAIAGECGATFLKISAPEVVSGMSGESEQKLRELFDEAISRAPSI 247

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 248 IFIDEI 253


>gi|212224243|ref|YP_002307479.1| Hypothetical CDC48/VCP [Thermococcus onnurineus NA1]
 gi|212009200|gb|ACJ16582.1| Hypothetical CDC48/VCP [Thermococcus onnurineus NA1]
          Length = 838

 Score = 43.5 bits (101), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 54/116 (46%), Gaps = 16/116 (13%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
           T E+  G  +A   ++  +E      E  +         VL  GPPG GKT LA+ VA E
Sbjct: 210 TYEDIGGLSDAIQKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANE 269

Query: 78  LGVNFRSTSGPVIAKA--GD----LAALLTNLEDR--DVLFIDEIHRLSIIVEEIL 125
              +F + +GP I     G+    L  +  + E+    ++FIDEI  ++   EE++
Sbjct: 270 ANAHFIAINGPEIMSKFYGESEERLREIFKDAEENAPSIIFIDEIDAIAPKREEVV 325



 Score = 38.1 bits (87), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 32/71 (45%), Gaps = 18/71 (25%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR---------- 106
           VL  GPPG GKT LA+ VA E   NF    GP +     L+  +   E R          
Sbjct: 584 VLLYGPPGTGKTLLAKAVATESEANFIGIRGPEV-----LSKWVGESEKRIREIFRKARQ 638

Query: 107 ---DVLFIDEI 114
               V+FIDEI
Sbjct: 639 AAPTVIFIDEI 649


>gi|183219658|ref|YP_001837654.1| cell division protease [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189909795|ref|YP_001961350.1| ATP-dependent Zn protease [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167774471|gb|ABZ92772.1| ATP-dependent Zn protease [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167778080|gb|ABZ96378.1| Cell division protease; putative signal peptide [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 650

 Score = 43.5 bits (101), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 38/66 (57%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL VGPPG GKT LA+ VA E GV F S SG    +   G  A+ + +L D+       +
Sbjct: 215 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFDQGKKNAPCI 274

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 275 IFIDEI 280


>gi|145221368|ref|YP_001132046.1| ATPase central domain-containing protein [Mycobacterium gilvum
           PYR-GCK]
 gi|145213854|gb|ABP43258.1| AAA ATPase, central domain protein [Mycobacterium gilvum PYR-GCK]
          Length = 574

 Score = 43.5 bits (101), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 14/78 (17%)

Query: 4   REGLLSRNVSQEDADISLLRPR-TLEEF-----TGQVEACSNLKVFIEAAKARAEALDHV 57
           RE LL+   S+ D  I L R +  +E +       +V A   +KV        A+A  H+
Sbjct: 280 RETLLAEAQSELDRQIGLTRVKEQIERYRAATQMAKVRAARGMKV--------AQASKHM 331

Query: 58  LFVGPPGLGKTTLAQVVA 75
           +F GPPG GKTT+A+VVA
Sbjct: 332 IFTGPPGTGKTTIARVVA 349


>gi|322694070|gb|EFY85910.1| mitochondrial AAA ATPase, putative [Metarhizium acridum CQMa 102]
          Length = 1013

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 33/75 (44%), Gaps = 10/75 (13%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH----------VLFVGPPGLGKTTLAQVVA 75
           T E+     E  S LK+    A  R +A  +           L  GPPG GKT LA+ VA
Sbjct: 698 TFEDVHAPKETISALKLLTSLALVRPDAFAYGVLAQDRIPGCLLYGPPGTGKTMLAKAVA 757

Query: 76  RELGVNFRSTSGPVI 90
           +E G N    SG  I
Sbjct: 758 KESGANMLEISGATI 772


>gi|304360727|ref|YP_003856858.1| putative DNA polymerase III [Clostridium phage phiCTP1]
 gi|302495586|gb|ADL40366.1| putative DNA polymerase III [Clostridium phage phiCTP1]
          Length = 364

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 4/59 (6%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
          RP T E+  GQ     N+K  +E   A  E     LF+G  G GKTTLA+++A  +  N
Sbjct: 9  RPHTFEDVVGQ----ENVKKILENQVATKEFKQAYLFIGSAGTGKTTLARILANAINAN 63


>gi|294494935|ref|YP_003541428.1| ATPase AAA [Methanohalophilus mahii DSM 5219]
 gi|292665934|gb|ADE35783.1| AAA family ATPase, CDC48 subfamily [Methanohalophilus mahii DSM
           5219]
          Length = 743

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 20/34 (58%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT LAQ VA E   NF S  GP I
Sbjct: 501 ILLYGPPGTGKTLLAQAVANEANANFISVKGPQI 534



 Score = 36.6 bits (83), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLAALLTNLEDR------DV 108
           V+  GPPG GKT +A+ VA E    F + +GP I     G+    L  + D        +
Sbjct: 225 VILYGPPGTGKTLIARAVASESNAYFINIAGPEIMGKYYGESEERLRKIFDEAAENAPSI 284

Query: 109 LFIDEIHRLS 118
           +F+DEI  ++
Sbjct: 285 IFVDEIDSIA 294


>gi|281207192|gb|EFA81375.1| AAA ATPase domain-containing protein [Polysphondylium pallidum
           PN500]
          Length = 801

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 9/63 (14%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHR 116
           +L  GPPG  KT +A+ +A E G+NF +  GP          LLT      VLF DE+  
Sbjct: 591 ILLYGPPGCSKTLMAKALATESGLNFIAVKGP---------ELLTRSNAPSVLFFDEMDG 641

Query: 117 LSI 119
           L++
Sbjct: 642 LAV 644


>gi|159127824|gb|EDP52939.1| peroxisome biosynthesis protein (PAS8/Peroxin-6), putative
           [Aspergillus fumigatus A1163]
          Length = 749

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%)

Query: 41  KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           ++F +  K R+     +LF GPPG GKT LA+ +A E  +NF S  GP
Sbjct: 438 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 481


>gi|134083057|emb|CAL00425.1| unnamed protein product [Aspergillus niger]
          Length = 1489

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%)

Query: 41   KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
            ++F +  K R+     +LF GPPG GKT LA+ +A E  +NF S  GP
Sbjct: 1077 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 1120


>gi|32473777|ref|NP_866771.1| cell division protein FtsH [Rhodopirellula baltica SH 1]
 gi|81661369|sp|Q7URM7|FTSH2_RHOBA RecName: Full=ATP-dependent zinc metalloprotease FtsH 2
 gi|32444313|emb|CAD74311.1| cell division protein FtsH [Rhodopirellula baltica SH 1]
          Length = 728

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 53/109 (48%), Gaps = 15/109 (13%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAK--ARAEAL-----DHVLFVGPPGLGKTTLAQVVAR 76
           P T E+  G  EA   ++  ++  K   + ++L       VL VGPPG GKT LA+ +A 
Sbjct: 247 PTTFEDVAGIEEAVDEVREVVDFLKNSEKYQSLGGRIPKGVLLVGPPGTGKTLLAKAIAG 306

Query: 77  ELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRL 117
           E GV F S SG       V   A  +  + T   +R   ++FIDE+  L
Sbjct: 307 EAGVPFFSLSGSDFVEMFVGVGAARVRDMFTQAVNRAPCIIFIDELDAL 355


>gi|71021079|ref|XP_760770.1| hypothetical protein UM04623.1 [Ustilago maydis 521]
 gi|46100247|gb|EAK85480.1| hypothetical protein UM04623.1 [Ustilago maydis 521]
          Length = 341

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 6/64 (9%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81
          RP TL++     +  S ++ FI+  +     L H+LF GPPG GKT+    +AR++ G  
Sbjct: 29 RPATLDDLVSHKDITSTIQNFIDKNR-----LPHLLFYGPPGTGKTSTILAMARKIFGPQ 83

Query: 82 FRST 85
          FR++
Sbjct: 84 FRNS 87


>gi|317036527|ref|XP_001397514.2| peroxisomal biogenesis factor 6 [Aspergillus niger CBS 513.88]
          Length = 1466

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%)

Query: 41   KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
            ++F +  K R+     +LF GPPG GKT LA+ +A E  +NF S  GP
Sbjct: 1054 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 1097


>gi|298707690|emb|CBJ26007.1| Pim1 homolog, ATP-dependent protease [Ectocarpus siliculosus]
          Length = 1075

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 74/179 (41%), Gaps = 37/179 (20%)

Query: 43  FIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNF------------------R 83
           FI   K R      +L FVGPPG+GKT++   +A+ L   F                  R
Sbjct: 529 FIAVGKLRGGVHGRILCFVGPPGVGKTSIGHSIAKALDREFYRFSVGGLRDVAEIKGHRR 588

Query: 84  STSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE--------EILYPAMEDFQLD 135
           +  G +  K   +  L     +  V+ IDEI +L+   +        E+L P+     LD
Sbjct: 589 TYVGSMPGKL--IQCLKVTGTNNPVVLIDEIDKLARAHDGDPASALLEVLDPSQNSAFLD 646

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
             +        V ++LS    I     +  +  PL+DR  + IRL+ Y++ +   I ++
Sbjct: 647 NYL-------DVPVDLSNCLFICTANVLDTIPGPLKDRMEV-IRLSGYDLPEKVAISEQ 697


>gi|242822751|ref|XP_002487951.1| peroxisome biosynthesis protein (PAS8/Peroxin-6), putative
            [Talaromyces stipitatus ATCC 10500]
 gi|218712872|gb|EED12297.1| peroxisome biosynthesis protein (PAS8/Peroxin-6), putative
            [Talaromyces stipitatus ATCC 10500]
          Length = 1455

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%)

Query: 41   KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
            ++F +  K R+     +LF GPPG GKT LA+ +A E  +NF S  GP
Sbjct: 1054 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 1097


>gi|115385012|ref|XP_001209053.1| peroxisomal biogenesis factor 6 [Aspergillus terreus NIH2624]
 gi|114196745|gb|EAU38445.1| peroxisomal biogenesis factor 6 [Aspergillus terreus NIH2624]
          Length = 1439

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%)

Query: 41   KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
            ++F +  K R+     +LF GPPG GKT LA+ +A E  +NF S  GP
Sbjct: 1051 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 1094


>gi|150390210|ref|YP_001320259.1| recombination factor protein RarA [Alkaliphilus metalliredigens
           QYMF]
 gi|149950072|gb|ABR48600.1| AAA ATPase, central domain protein [Alkaliphilus metalliredigens
           QYMF]
          Length = 422

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 60/257 (23%), Positives = 108/257 (42%), Gaps = 33/257 (12%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  LE+  GQ    S  ++  +  +A    + +++F GPPG+GKTT+A +++      
Sbjct: 9   MRPIKLEDVVGQEHILSKNQILNKTLQAGH--ITNMIFYGPPGVGKTTVANIISNMTNKK 66

Query: 82  FRSTSGPVIAKAGDLAALLTNLE-----DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
               +    A   D+  ++  L+     +  +L++DEI   +   ++ L   +E+ ++ L
Sbjct: 67  LYKLNA-TNASIKDIQRIVAELDSFMTMNGVLLYLDEIQNFNKKQQQSLLEYIENGKITL 125

Query: 137 MVG--EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           +    E P        LSR T+                 F +  + N   IE LK +++R
Sbjct: 126 IASTTENPYHYIYNAILSRSTVF---------------EFKLLTKSNV--IEGLKQVIKR 168

Query: 195 --GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI--TREIADAAL 250
                 T +   +EA   IA  S G  R A   L      AE  + + +  T  IA  + 
Sbjct: 169 INDEGKTLVEYEEEALDYIATASNGDLRRAMNALELAMYAAESENKEQVFLTIHIAQEST 228

Query: 251 LR--LAIDKMGFDQLDL 265
            +  ++ DK G    D+
Sbjct: 229 QKKVISYDKFGDQHYDI 245


>gi|308272185|emb|CBX28792.1| Cell division cycle protein 48 homolog AF_1297 [uncultured
           Desulfobacterium sp.]
          Length = 711

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 8/75 (10%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR--- 106
           +A   VL  GPPG GKT +A+ +A E   NF S SGP I     G+  A L  + +    
Sbjct: 213 DAPKGVLLYGPPGCGKTLIARAIAHETEANFFSISGPEIIHKFYGESEAHLRKIFEEATR 272

Query: 107 ---DVLFIDEIHRLS 118
               +LF+DEI  ++
Sbjct: 273 KGPSILFLDEIDAIA 287



 Score = 42.7 bits (99), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 23/34 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L VGPPG GKT +A+ +A E  VNF S  GP +
Sbjct: 491 ILLVGPPGCGKTMMAKAIATESHVNFISIKGPAL 524


>gi|294788440|ref|ZP_06753683.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Simonsiella
           muelleri ATCC 29453]
 gi|294483871|gb|EFG31555.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Simonsiella
           muelleri ATCC 29453]
          Length = 419

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +AR+L V F       + +AG    D+  ++T L        
Sbjct: 113 NILLIGPTGSGKTLLAQSLARKLNVPFAMADATTLTEAGYVGEDVEQIITKLLNKCDGDV 172

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 173 AKAQRGIVYIDEIDKIS 189


>gi|291278894|ref|YP_003495729.1| ATPase AAA family [Deferribacter desulfuricans SSM1]
 gi|290753596|dbj|BAI79973.1| ATPase, AAA family [Deferribacter desulfuricans SSM1]
          Length = 404

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 25/100 (25%), Positives = 49/100 (49%), Gaps = 6/100 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           L P+T +E  GQ    S+  +F       +     ++ +GPPG GKTT+A+++ ++  + 
Sbjct: 7   LEPKTFDEIVGQEHLLSSNALFRNIV--LSCDFQSIILIGPPGCGKTTIAKLIGKQHSMI 64

Query: 82  FRSTSGPVIAKAGDLAALLTNLE---DRDVLFIDEIHRLS 118
           F        + + D+  ++   +      ++FIDEIH  +
Sbjct: 65  FYRLHAANCS-SSDIRKIVEETKGYGKTSIIFIDEIHHFN 103


>gi|284048929|ref|YP_003399268.1| ATP-dependent metalloprotease FtsH [Acidaminococcus fermentans DSM
           20731]
 gi|283953150|gb|ADB47953.1| ATP-dependent metalloprotease FtsH [Acidaminococcus fermentans DSM
           20731]
          Length = 645

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 51/104 (49%), Gaps = 15/104 (14%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKAR-------AEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  EA   L+  +E  KA        A+    VL  GPPG GKT LA+ VA E 
Sbjct: 152 TFKDVAGADEAKQELEEVVEFLKAPQKYNQLGAKIPKGVLLYGPPGTGKTLLAKAVAGEA 211

Query: 79  GVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEI 114
           GV F S SG    +   G  A+ + +L D+       ++FIDEI
Sbjct: 212 GVPFFSISGSDFVEMFVGVGASRVRDLFDQAKKNAPCIVFIDEI 255


>gi|301104184|ref|XP_002901177.1| ribosome biogenesis ATPase RIX7 [Phytophthora infestans T30-4]
 gi|262101111|gb|EEY59163.1| ribosome biogenesis ATPase RIX7 [Phytophthora infestans T30-4]
          Length = 771

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ +A E G NF S  GP
Sbjct: 487 VLLYGPPGCGKTLLAKAIAHESGANFISIKGP 518



 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 32/66 (48%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDR------DV 108
           VL  GPPG GK+ LA  +A E G  F   S P  V   +G+    L  L D        +
Sbjct: 188 VLLHGPPGTGKSMLAHAIAGECGATFLKISAPEVVSGMSGESEQKLRELFDEAISRAPSI 247

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 248 IFIDEI 253


>gi|304316830|ref|YP_003851975.1| stage V sporulation protein K [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778332|gb|ADL68891.1| stage V sporulation protein K [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 296

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 105/248 (42%), Gaps = 68/248 (27%)

Query: 56  HVLFVGPPGLGKTTLAQVVAREL-GVNFRSTSGPVIAKAGDLAA---------LLTNLED 105
           H++F G PG GKTT+A+++ + L G+   S    V  +  DL           +  N++ 
Sbjct: 78  HMVFKGNPGTGKTTVARILGKLLKGIGVLSKGHVVEVERADLVGEYIGHTAHRVQENVKK 137

Query: 106 R--DVLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLSRFT 155
               +LF+DE + L+   +        + L  AMED++                    F 
Sbjct: 138 SLGGILFVDEAYSLARGGDKDFGKEAIDTLVKAMEDYK------------------DEFI 179

Query: 156 LIAATTR----VGLLTNP-LQDRFGIPIRLNF--YEIEDLKTIVQRGAKLTGLAVTDEAA 208
           LI A  R      L TNP L+ RF  PI+++F  Y I++L  I +   K     +TD A 
Sbjct: 180 LILAGYRDEMEYFLNTNPGLRSRF--PIQIDFPDYTIDELLQIAELMVKNRQYILTDSAK 237

Query: 209 CEI--------AMRSRGTPRIAGRLLRR-VRDFA-EVAHAKTITREIADAALLRLAIDKM 258
            +I          R  G  R+   ++ R +R  A  + + KTIT++           D M
Sbjct: 238 RKIMKVLINDNTTREIGNARLVRNIIERAIRKHAVRIMNKKTITKD-----------DLM 286

Query: 259 GFDQLDLR 266
             D +D+R
Sbjct: 287 IIDSIDIR 294


>gi|14520329|ref|NP_125804.1| replication factor C large subunit [Pyrococcus abyssi GE5]
 gi|42559542|sp|Q9V2G3|RFCL_PYRAB RecName: Full=Replication factor C large subunit; Short=RFC large
          subunit; AltName: Full=Clamp loader large subunit;
          AltName: Full=PabRFC large subunit
 gi|5457544|emb|CAB49035.1| rfcL activator 1, replication factor C, large subunit [Pyrococcus
          abyssi GE5]
          Length = 479

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAA-KARAEALDHVLFVGPPGLGKTTLAQVVARE 77
          +   RPR L E   Q +A S +K +IEA           +L  GPPG GKTT    +ARE
Sbjct: 7  VEKYRPRRLSEIINQEDAISKVKAWIEAWLHGNPPKKKALLLAGPPGSGKTTTVYALARE 66

Query: 78 LGVNF 82
             NF
Sbjct: 67 Y--NF 69


>gi|327401704|ref|YP_004342543.1| Microtubule-severing ATPase [Archaeoglobus veneficus SNP6]
 gi|327317212|gb|AEA47828.1| Microtubule-severing ATPase [Archaeoglobus veneficus SNP6]
          Length = 354

 Score = 43.5 bits (101), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 12/114 (10%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAE----ALDHVLFVGPPGLGKTTLAQV 73
           +  +++  +L +  GQ EA   +KV +E  K   +    A  +VLF GPPG GKT  A+ 
Sbjct: 98  ETEIVKDVSLSDVVGQEEAKRKVKVILEFLKNPEKFGKWAPRNVLFYGPPGTGKTMTAKA 157

Query: 74  VARELGVNFRSTSGPVI--AKAGDLAALLTNLEDRD------VLFIDEIHRLSI 119
           +A E  V F S     +     GD A  +  L +R       ++F+DE   +++
Sbjct: 158 LANEAKVPFLSVKSTKLIGEHVGDGARRIHELYERARQVAPCIVFLDEFDSIAL 211


>gi|322707738|gb|EFY99316.1| DNA replication ATPase [Metarhizium anisopliae ARSEF 23]
          Length = 551

 Score = 43.5 bits (101), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 71/152 (46%), Gaps = 18/152 (11%)

Query: 22  LRPRTLEEFTGQVEACSN--LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +RP TL++  GQ     N  L+  IE  +     +  ++  G  G GKTT+A+ +A  +G
Sbjct: 143 MRPTTLDDVCGQDLVGPNGVLRGLIETNR-----VPSMILWGASGTGKTTIARCIAHMVG 197

Query: 80  VNF----RSTSGPVIAKA--GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             F     +++G    K    + A  LT    R ++F DEIHR +   +++    +E   
Sbjct: 198 SRFIELNATSTGVSECKKLFQEAANELTLTGRRTIIFCDEIHRFNKAQQDVFLKPVEAGT 257

Query: 134 LDLM--VGEGPSARSVKINLSR---FTLIAAT 160
           + L+    E PS +     LSR   FTL + T
Sbjct: 258 VTLIGATTENPSFKVANALLSRCRTFTLRSLT 289


>gi|239946415|gb|ACS36235.1| cell division cycle protein 48 [Guillardia theta]
          Length = 792

 Score = 43.5 bits (101), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  + D+       V
Sbjct: 507 VLFYGPPGCGKTLLAKAIANECQSNFISIKGPELLTMWFGESEANVREVFDKARQSAPCV 566

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 567 LFFDELDSIA 576



 Score = 36.2 bits (82), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AG----DLAALLTNLEDR--DV 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG    +L       E     +
Sbjct: 234 LLMYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGESEDNLRKAFAEAEKNAPSI 293

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 294 IFIDEIDSIA 303


>gi|225557253|gb|EEH05539.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
          Length = 424

 Score = 43.5 bits (101), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 6/60 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81
           RP +LEE +G  +  S +  FI+  +     L H+L  GPPG GKT+    +AR + GVN
Sbjct: 77  RPNSLEEVSGHHDIISTINRFIDKNR-----LPHLLLYGPPGTGKTSTILALARRIYGVN 131


>gi|157123250|ref|XP_001660080.1| replication factor c / DNA polymerase iii gamma-tau subunit
          [Aedes aegypti]
 gi|108874432|gb|EAT38657.1| replication factor c / DNA polymerase iii gamma-tau subunit
          [Aedes aegypti]
          Length = 330

 Score = 43.5 bits (101), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP TL +     E  S +  FI+      E L H+LF GPPG GKT+     AR+L
Sbjct: 16 RPATLSDLISHEEIISTINKFIQE-----EQLPHLLFYGPPGTGKTSTILACARQL 66


>gi|330506537|ref|YP_004382965.1| AAA family ATPase [Methanosaeta concilii GP-6]
 gi|328927345|gb|AEB67147.1| AAA family ATPase, CDC48 subfamily [Methanosaeta concilii GP-6]
          Length = 723

 Score = 43.5 bits (101), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 8/81 (9%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLED 105
           EA   VL  GPPG GKT LA+ +A E   +F + SGP I           L  L    E+
Sbjct: 210 EAPKGVLLYGPPGTGKTLLAKALASETNAHFETLSGPEIMSKYYGESEEKLRQLFKTAEE 269

Query: 106 R--DVLFIDEIHRLSIIVEEI 124
           +   ++ IDEI  ++   EE+
Sbjct: 270 QAPSIILIDEIDSIAPKREEV 290



 Score = 39.7 bits (91), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 488 ILLYGPPGTGKTMLAKAVATESQANFISIKGP 519


>gi|315441748|ref|YP_004074627.1| ATPase AAA [Mycobacterium sp. Spyr1]
 gi|315260051|gb|ADT96792.1| AAA+ family ATPase [Mycobacterium sp. Spyr1]
          Length = 574

 Score = 43.5 bits (101), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 14/78 (17%)

Query: 4   REGLLSRNVSQEDADISLLRPR-TLEEF-----TGQVEACSNLKVFIEAAKARAEALDHV 57
           RE LL+   S+ D  I L R +  +E +       +V A   +KV        A+A  H+
Sbjct: 280 RETLLAEAQSELDRQIGLTRVKEQIERYRAATQMAKVRAARGMKV--------AQASKHM 331

Query: 58  LFVGPPGLGKTTLAQVVA 75
           +F GPPG GKTT+A+VVA
Sbjct: 332 IFTGPPGTGKTTIARVVA 349


>gi|296090489|emb|CBI40820.3| unnamed protein product [Vitis vinifera]
          Length = 201

 Score = 43.5 bits (101), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 9/67 (13%)

Query: 57  VLFVGPPGLGKTTLAQVVAR-------ELGVNFRSTSGPVIAKAGDLAALLTNLEDR--D 107
           +L  GPPGLGKTTLA V A+       E+ V+   +S  + AK  D+  + + +ED   +
Sbjct: 31  LLLCGPPGLGKTTLAHVAAKHCGYHVVEINVSDDRSSSTIEAKILDVVQMNSVMEDSKPN 90

Query: 108 VLFIDEI 114
            L IDEI
Sbjct: 91  CLVIDEI 97


>gi|88602285|ref|YP_502463.1| replication factor C small subunit [Methanospirillum hungatei
          JF-1]
 gi|110287812|sp|Q2FQT9|RFCS_METHJ RecName: Full=Replication factor C small subunit; Short=RFC small
          subunit; AltName: Full=Clamp loader small subunit
 gi|88187747|gb|ABD40744.1| replication factor C small subunit [Methanospirillum hungatei
          JF-1]
          Length = 323

 Score = 43.5 bits (101), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 10/70 (14%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          I   RPR LE+  GQ E    L+ ++    A+ E + H+LF G  G GKTT A  +ARE 
Sbjct: 9  IEKYRPRVLEDIIGQQEIIERLRSYV----AKRE-MPHLLFTGNAGTGKTTAAVALAREF 63

Query: 79 -----GVNFR 83
                +NFR
Sbjct: 64 FGEDWQMNFR 73


>gi|255944783|ref|XP_002563159.1| peroxin-6 Pex6-Penicillium chrysogenum [Penicillium chrysogenum
            Wisconsin 54-1255]
 gi|51701844|sp|Q9HG03|PEX6_PENCH RecName: Full=Peroxisomal biogenesis factor 6; AltName:
            Full=Peroxin-6
 gi|9963893|gb|AAG09749.1|AF233277_1 peroxin-6 [Penicillium chrysogenum]
 gi|211587894|emb|CAP85959.1| peroxin-6 Pex6-Penicillium chrysogenum [Penicillium chrysogenum
            Wisconsin 54-1255]
          Length = 1459

 Score = 43.5 bits (101), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%)

Query: 41   KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
            ++F +  K R+     +LF GPPG GKT LA+ +A E  +NF S  GP
Sbjct: 1054 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 1097


>gi|328951792|ref|YP_004369126.1| IstB domain protein ATP-binding protein [Desulfobacca acetoxidans
           DSM 11109]
 gi|328452116|gb|AEB07945.1| IstB domain protein ATP-binding protein [Desulfobacca acetoxidans
           DSM 11109]
          Length = 247

 Score = 43.5 bits (101), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 54/110 (49%), Gaps = 11/110 (10%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKAR-AEALDHVLFVGPPGLGKTTLA------QVVARE 77
           +TLEEF    +   N K  I  A     E  +++LF+GPPG+GKT LA        +A+ 
Sbjct: 68  KTLEEFDFSFQPQLNEKEIIRLASLDFLEKKENLLFLGPPGVGKTHLAIAFGVKACMAKY 127

Query: 78  LGVNFRS----TSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
             +  R+    T   V  K G L  +L NL   D++ +DE+  L I  E+
Sbjct: 128 RVLFIRTQDLLTDLSVAHKTGRLGQVLLNLSRLDLVILDELGYLPITPEQ 177


>gi|325108972|ref|YP_004270040.1| membrane protease FtsH catalytic subunit [Planctomyces brasiliensis
           DSM 5305]
 gi|324969240|gb|ADY60018.1| membrane protease FtsH catalytic subunit [Planctomyces brasiliensis
           DSM 5305]
          Length = 751

 Score = 43.5 bits (101), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 41/83 (49%), Gaps = 13/83 (15%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAK--ARAEALDH-----VLFVGPPG 64
           +SQED         T  +  G  EA   L+  +E  +  A+ +AL       VL VGPPG
Sbjct: 244 ISQEDVKT------TFNDVAGIEEAVGELREIVEFLRTPAKYQALGGRIPRGVLLVGPPG 297

Query: 65  LGKTTLAQVVARELGVNFRSTSG 87
            GKT LA+ VA E GV F   SG
Sbjct: 298 TGKTLLAKAVAGEAGVPFYGLSG 320


>gi|303274701|ref|XP_003056666.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226461018|gb|EEH58311.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 331

 Score = 43.5 bits (101), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RPR + + + Q E    L+  +E A      + H+LF GPPG GKTT A  + R+L
Sbjct: 14 RPRKIGDVSHQEEVVRTLQKALETAN-----MPHMLFYGPPGTGKTTCALAICRQL 64


>gi|225440141|ref|XP_002277745.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1132

 Score = 43.5 bits (101), Expect = 0.045,   Method: Composition-based stats.
 Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 17/114 (14%)

Query: 24  PRT-LEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVV 74
           PR   E+  GQ E  + L   +E  +   +A           VL  GPPG  KT +A+ V
Sbjct: 838 PRVKWEDVGGQNEVKAQLMEAVEWPQKHQDAFKRIGTRPPTGVLLFGPPGCSKTLMARAV 897

Query: 75  ARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DVLFIDEIHRLSII 120
           A E G+NF +  GP +     G+    + +L  +       ++F DEI  L++I
Sbjct: 898 ASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAVI 951



 Score = 37.7 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DV 108
           VL  GPPG GKT+LAQ+   + GVN  S +G  I     G+    L  + D        V
Sbjct: 499 VLLHGPPGTGKTSLAQLCICDAGVNLFSVNGAEIVSQYYGESEQALHEIFDSASQAAPAV 558

Query: 109 LFIDEIHRLS 118
           +FIDE+  ++
Sbjct: 559 VFIDELDAIA 568


>gi|198275273|ref|ZP_03207804.1| hypothetical protein BACPLE_01432 [Bacteroides plebeius DSM 17135]
 gi|198271856|gb|EDY96126.1| hypothetical protein BACPLE_01432 [Bacteroides plebeius DSM 17135]
          Length = 738

 Score = 43.5 bits (101), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 4/73 (5%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKA----RAEALDHVLFVGPPGLGKTT 69
           +++A +  L  R   +  GQ EA   +   ++ AKA      + L  +LFVGP G+GKT 
Sbjct: 437 EDNASLEALYERISGQIYGQDEAIRQVVEAVQMAKAGLLDENKPLASLLFVGPTGVGKTE 496

Query: 70  LAQVVARELGVNF 82
           +A+V+A ELG++ 
Sbjct: 497 VAKVLASELGISL 509


>gi|139436961|ref|ZP_01771121.1| Hypothetical protein COLAER_00094 [Collinsella aerofaciens ATCC
           25986]
 gi|133776608|gb|EBA40428.1| Hypothetical protein COLAER_00094 [Collinsella aerofaciens ATCC
           25986]
          Length = 635

 Score = 43.5 bits (101), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 52/105 (49%), Gaps = 17/105 (16%)

Query: 26  TLEEFTGQVEACSNLKV---FIEAAKARAEALDH-----VLFVGPPGLGKTTLAQVVARE 77
           T ++  GQ EA  +LK    F+E  + R E +        L VGPPG GKT LA+ VA E
Sbjct: 185 TFKDVAGQEEAKESLKEVVDFLEKPQ-RYEEIGAKLPRGALLVGPPGTGKTLLAKAVAGE 243

Query: 78  LGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--VLFIDEI 114
            GV F S SG    +      A  +  L    +++   ++FIDEI
Sbjct: 244 AGVPFFSISGSEFVEMFVGRGAAKVRDLFKQAKEKAPCIVFIDEI 288


>gi|121705106|ref|XP_001270816.1| peroxisome assembly factor-2 (peroxisomal-type atpase 1) [Aspergillus
            clavatus NRRL 1]
 gi|119398962|gb|EAW09390.1| peroxisome assembly factor-2 (peroxisomal-type atpase 1) [Aspergillus
            clavatus NRRL 1]
          Length = 1449

 Score = 43.5 bits (101), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%)

Query: 41   KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
            ++F +  K R+     +LF GPPG GKT LA+ +A E  +NF S  GP
Sbjct: 1056 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 1099


>gi|46122437|ref|XP_385772.1| hypothetical protein FG05596.1 [Gibberella zeae PH-1]
          Length = 1139

 Score = 43.5 bits (101), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%)

Query: 41  KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           ++F +  K R+     +LF GPPG GKT LA+ +A E  +NF S  GP
Sbjct: 775 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEYSLNFFSVKGP 818


>gi|159110203|ref|XP_001705363.1| Replication factor C, subunit 4 [Giardia lamblia ATCC 50803]
 gi|157433446|gb|EDO77689.1| Replication factor C, subunit 4 [Giardia lamblia ATCC 50803]
          Length = 322

 Score = 43.5 bits (101), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 19/123 (15%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL---- 78
           RPRTL+   G  E  + L+ F  AA+     L ++LF G PGLGKTT+A  +A ++    
Sbjct: 11  RPRTLDGLIGNPEILARLRYF--AAQGN---LPNILFAGGPGLGKTTIALCLANQMLGAH 65

Query: 79  -GVNFRSTSGPVIAKAGDLAALLTNLEDRDV---------LFIDEIHRLSIIVEEILYPA 128
             V F   +        D+ A +     + V         +F+DE   ++   +++L   
Sbjct: 66  RSVAFLELNASDERNVSDIRAKVKTFAQKQVTLPAGIQKLVFLDECDAMTEAAQQVLRRI 125

Query: 129 MED 131
           M+D
Sbjct: 126 MDD 128


>gi|328709119|ref|XP_001952026.2| PREDICTED: lon protease homolog, mitochondrial-like [Acyrthosiphon
           pisum]
          Length = 927

 Score = 43.5 bits (101), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 92/218 (42%), Gaps = 40/218 (18%)

Query: 16  DADISLLRPRTL--EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQ 72
           D +  L R  T+  E+  G  E    +  FI  +K +      +L F GPPG+GKT++A+
Sbjct: 451 DENFDLKRATTILDEDHYGMEEVKKRILEFIAVSKLKGSTHGKILCFHGPPGVGKTSIAK 510

Query: 73  VVARELGVN-FRSTSG--------------PVIAKAGDLAALLTNLEDRD-VLFIDEIHR 116
            +AR L    FR + G               V A  G +   L      + ++ IDE+ +
Sbjct: 511 SIARALNREYFRFSVGGMTDVAEIKGHRRTYVGAMPGKMIQCLKKTSTENPLVLIDEVDK 570

Query: 117 L--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +        S  + E+L P      LD  +        V ++LS+   I A   +  +  
Sbjct: 571 IGRGHQGDPSSALLEMLDPEQNANFLDHYL-------DVSVDLSKVLFICAANVINTIPE 623

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQ-----RGAKLTGL 201
           PL+DR  + I ++ Y  E+   I +     +G K TGL
Sbjct: 624 PLRDRMEL-IDVSGYVAEEKMAIAKQYLIPQGLKSTGL 660


>gi|326921757|ref|XP_003207122.1| PREDICTED: LOW QUALITY PROTEIN: peroxisome biogenesis factor 1-like
           [Meleagris gallopavo]
          Length = 1263

 Score = 43.5 bits (101), Expect = 0.046,   Method: Composition-based stats.
 Identities = 21/32 (65%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  G PG GKT LA VVARE G+NF S  GP
Sbjct: 858 VLLYGAPGTGKTLLAGVVARESGMNFISVKGP 889


>gi|242211529|ref|XP_002471602.1| predicted protein [Postia placenta Mad-698-R]
 gi|220729278|gb|EED83155.1| predicted protein [Postia placenta Mad-698-R]
          Length = 350

 Score = 43.5 bits (101), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 6/66 (9%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          +   RP TL++     +  S ++ FIE  +     L H+LF GPPG GKT+    VAR +
Sbjct: 34 VEKYRPVTLDDVVSHKDITSTIEKFIEKNR-----LPHLLFYGPPGTGKTSTILAVARRI 88

Query: 79 -GVNFR 83
           G ++R
Sbjct: 89 YGKDYR 94


>gi|212546641|ref|XP_002153474.1| peroxisome biosynthesis protein (PAS8/Peroxin-6), putative
            [Penicillium marneffei ATCC 18224]
 gi|210064994|gb|EEA19089.1| peroxisome biosynthesis protein (PAS8/Peroxin-6), putative
            [Penicillium marneffei ATCC 18224]
          Length = 1452

 Score = 43.5 bits (101), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%)

Query: 41   KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
            ++F +  K R+     +LF GPPG GKT LA+ +A E  +NF S  GP
Sbjct: 1048 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 1091


>gi|193702269|ref|XP_001948634.1| PREDICTED: replication factor C subunit 4-like [Acyrthosiphon
          pisum]
          Length = 359

 Score = 43.5 bits (101), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 4/56 (7%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RPRT++E + Q E  + LK  +E    +   + H+LF GPPG GKT+     AR+L
Sbjct: 42 RPRTVDEVSEQSEIVAVLKQCLE----QGADMPHLLFYGPPGTGKTSTIIAAARQL 93


>gi|146093994|ref|XP_001467108.1| replication factor C, subunit 2 [Leishmania infantum JPCM5]
 gi|134071472|emb|CAM70161.1| putative replication factor C, subunit 2 [Leishmania infantum
          JPCM5]
          Length = 354

 Score = 43.5 bits (101), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 29/56 (51%), Gaps = 4/56 (7%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RPRTL E   Q EA   L+  ++        + H LF GPPG GKTT    VA EL
Sbjct: 32 RPRTLAEVEAQDEAVGALRACLK----EGANMPHFLFHGPPGTGKTTSILAVAHEL 83


>gi|157872662|ref|XP_001684866.1| replication factor C, subunit 2 [Leishmania major strain
          Friedlin]
 gi|68127936|emb|CAJ06571.1| putative replication factor C, subunit 2 [Leishmania major strain
          Friedlin]
          Length = 354

 Score = 43.5 bits (101), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 29/56 (51%), Gaps = 4/56 (7%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RPRTL E   Q EA   L+  ++        + H LF GPPG GKTT    VA EL
Sbjct: 32 RPRTLAEVEAQDEAVGALRACLK----EGANMPHFLFHGPPGTGKTTSILAVAHEL 83


>gi|15899195|ref|NP_343800.1| TATA binding protein (TBP)-interacting protein (TIP49-like),
           putative [Sulfolobus solfataricus P2]
 gi|13815753|gb|AAK42590.1| TATA binding protein (TBP)-interacting protein (TIP49-like),
           putative [Sulfolobus solfataricus P2]
          Length = 476

 Score = 43.5 bits (101), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 28/50 (56%)

Query: 30  FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
             GQ EA     V ++  K    +   +LFVGPPG GKT LA  +ARELG
Sbjct: 63  LVGQAEAREAAGVVVQLIKQGKMSGKGILFVGPPGTGKTALAVAIARELG 112


>gi|328951829|ref|YP_004369163.1| IstB domain protein ATP-binding protein [Desulfobacca acetoxidans
           DSM 11109]
 gi|328452153|gb|AEB07982.1| IstB domain protein ATP-binding protein [Desulfobacca acetoxidans
           DSM 11109]
          Length = 247

 Score = 43.5 bits (101), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 54/110 (49%), Gaps = 11/110 (10%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKAR-AEALDHVLFVGPPGLGKTTLA------QVVARE 77
           +TLEEF    +   N K  I  A     E  +++LF+GPPG+GKT LA        +A+ 
Sbjct: 68  KTLEEFDFSFQPQLNEKEIIRLASLDFLEKKENLLFLGPPGVGKTHLAIAFGVKACMAKY 127

Query: 78  LGVNFRS----TSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
             +  R+    T   V  K G L  +L NL   D++ +DE+  L I  E+
Sbjct: 128 RVLFIRTQDLLTDLSVAHKTGRLGQVLLNLSRLDLVILDELGYLPITPEQ 177


>gi|315650623|ref|ZP_07903683.1| ATP-dependent Clp protease ATP-binding subunit [Eubacterium
           saburreum DSM 3986]
 gi|315487120|gb|EFU77442.1| ATP-dependent Clp protease ATP-binding subunit [Eubacterium
           saburreum DSM 3986]
          Length = 427

 Score = 43.5 bits (101), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 65/135 (48%), Gaps = 28/135 (20%)

Query: 18  DISLLRPRTLEEF-----TGQVEACSNLKVFIE------AAKARAEA---LDHVLFVGPP 63
           DI+LL+P+ +++F      GQ +A   L V +        +K  AE      ++L +GP 
Sbjct: 59  DINLLKPKEIKKFLDDYVIGQDDAKKVLSVAVYNHYKRIKSKRNAEVEIQKSNILMLGPT 118

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---EDRDV-------L 109
           G GKT LAQ +A+ L V F       + +AG    D+  +L  L    D DV       +
Sbjct: 119 GSGKTYLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLIQAADGDVKRAEYGII 178

Query: 110 FIDEIHRLSIIVEEI 124
           +IDEI +++   E +
Sbjct: 179 YIDEIDKITKKSENV 193


>gi|315022325|gb|EFT35353.1| putative DNA polymerase III [Riemerella anatipestifer RA-YM]
          Length = 559

 Score = 43.5 bits (101), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 95/230 (41%), Gaps = 41/230 (17%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  +   GQ    S++   +E A A  +    +LF GP G+GKTT A+++AR++    
Sbjct: 12  RPQEFDTVVGQ----SHITDTLEHAIAENQLAQALLFCGPRGVGKTTCARILARKINEKD 67

Query: 83  RSTSG--------PVIAKAGDLAALLTNLEDR----------DVLFIDEIHRLSIIVEEI 124
            +TS          + A + +    +  L D+           V  IDE+H LS      
Sbjct: 68  GATSEDGFSYNIFELDAASNNSVDDIRELTDQVRYAPQVGKYKVYIIDEVHMLS------ 121

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
                + F   L   E P A ++         I ATT    +   +  R  I        
Sbjct: 122 ----SQAFNAFLKTLEEPPAHAI--------FILATTEKHKIIPTILSRCQI-YDFKRIT 168

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
           IED++  +++ A   G++  D+A   IA ++ G  R A  +  R+  F +
Sbjct: 169 IEDIQAHLRKIADKEGISYEDDALFLIAQKADGALRDALSIFDRLVTFTQ 218


>gi|300122395|emb|CBK22966.2| unnamed protein product [Blastocystis hominis]
          Length = 844

 Score = 43.5 bits (101), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 32/71 (45%), Gaps = 8/71 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
           T E+  G  E    LK  ++      E  +         VLF GPPG GKT +A+ VA E
Sbjct: 477 TWEDIGGLEEVKQELKEMVQYPVEYPEMFEKYGMDPTRGVLFYGPPGCGKTLMAKAVANE 536

Query: 78  LGVNFRSTSGP 88
              NF S  GP
Sbjct: 537 CQSNFISIKGP 547



 Score = 40.0 bits (92), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 41/76 (53%), Gaps = 8/76 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           VL  GPPG GKT LA+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 243 VLLYGPPGSGKTLLARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNAPSI 302

Query: 109 LFIDEIHRLSIIVEEI 124
           +FIDEI  ++   E+I
Sbjct: 303 IFIDEIDSIAPKREKI 318


>gi|154498121|ref|ZP_02036499.1| hypothetical protein BACCAP_02102 [Bacteroides capillosus ATCC
           29799]
 gi|150273111|gb|EDN00268.1| hypothetical protein BACCAP_02102 [Bacteroides capillosus ATCC
           29799]
          Length = 421

 Score = 43.5 bits (101), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 67/267 (25%), Positives = 106/267 (39%), Gaps = 54/267 (20%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP +L++  GQ         L+  IE+ K     + +++F GP G GKTT+A ++A+  
Sbjct: 10  IRPESLDDVVGQRHILGEGGLLRRIIESGK-----IPNLVFYGPSGTGKTTVANIIAKRS 64

Query: 79  GVNFR---STSGP------VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           G   R   +T+G       VIA  G + A      +  +L++DEI   +   ++ L   +
Sbjct: 65  GRALRRINATTGSLSDIKDVIADVGTMLA-----PNGILLYLDEIQYFNKKQQQSLLEVI 119

Query: 130 E--DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E  D  L     E P        LSR T+                    P+       ED
Sbjct: 120 EKGDVTLVASTTENPYFYVYNAVLSRSTVFEFK----------------PV-----TAED 158

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAG---RLLRRVRDFAEVAHAK----T 240
           +   V RG  +    + ++A CE  +R        G   + +  V      A  K    T
Sbjct: 159 VLPAVNRGITIMEQRLGEQAVCEDGVREHIASACGGDVRKAMNAVELLLNSARRKDGVLT 218

Query: 241 ITREIADAALLRLAI--DKMGFDQLDL 265
           +T E A A   R A+  D+ G D  D+
Sbjct: 219 VTLEDAKAVAQRSAMRYDREGDDHYDI 245


>gi|119872050|ref|YP_930057.1| AAA family ATPase, CDC48 subfamily protein [Pyrobaculum islandicum
           DSM 4184]
 gi|119673458|gb|ABL87714.1| AAA family ATPase, CDC48 subfamily [Pyrobaculum islandicum DSM
           4184]
          Length = 738

 Score = 43.5 bits (101), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 53/118 (44%), Gaps = 17/118 (14%)

Query: 24  PRTLEEFTGQVE-ACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVV 74
           PR   E  G +E A   ++  +E      E   H        +L +GPPG GKT LA+ V
Sbjct: 172 PRVTWEDIGDLEDAKQKIRELVELPLRHPELFKHLGIEPPKGILLIGPPGTGKTLLAKAV 231

Query: 75  ARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DVLFIDEIHRLSIIVEEI 124
           A E    F + +GP I     G+  A L  + +        ++FIDEI  ++   EE+
Sbjct: 232 ANEANAYFVAINGPEIMSKYYGESEARLREIFEEAKKNAPAIIFIDEIDAIAPKREEV 289



 Score = 40.4 bits (93), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 17/32 (53%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG+GKT  A+ VA E G NF +  GP
Sbjct: 502 ILLFGPPGVGKTLFAKAVATESGANFIAVRGP 533


>gi|118405046|ref|NP_001072787.1| spermatogenesis-associated protein 5-like protein 1 [Xenopus
           (Silurana) tropicalis]
 gi|123914803|sp|Q0VA52|SPA5L_XENTR RecName: Full=Spermatogenesis-associated protein 5-like protein 1
 gi|111305502|gb|AAI21247.1| Spermatogenesis-associated protein 5-like protein 1 [Xenopus
           (Silurana) tropicalis]
          Length = 593

 Score = 43.5 bits (101), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 19/103 (18%)

Query: 35  EACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARELGVNFRSTS 86
           + C++LK  I       E +          VL +GPPG+GKT L + VARE+G      S
Sbjct: 198 DTCASLKEIIHMPLHYPETMHKLGLPCPKGVLLIGPPGVGKTLLVKAVAREVGAYVIGLS 257

Query: 87  GPVI--AKAGDLAALLTNLEDR---------DVLFIDEIHRLS 118
           GP I  ++ G+    L  + ++          +LFIDE+  L 
Sbjct: 258 GPAIHGSRPGESEENLRKIFEKAREAACSGPALLFIDEVDALC 300


>gi|88603693|ref|YP_503871.1| AAA family ATPase, CDC48 subfamily protein [Methanospirillum
           hungatei JF-1]
 gi|88189155|gb|ABD42152.1| AAA family ATPase, CDC48 subfamily [Methanospirillum hungatei JF-1]
          Length = 804

 Score = 43.5 bits (101), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 38/79 (48%), Gaps = 11/79 (13%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTT 69
           ++S LR R   +  G  +A   ++  +E    R E  D         VL  GPPG GKT 
Sbjct: 450 EVSHLRWR---DVGGLSDAIEEIRESVEYPLTRREKYDDLGIQSPRGVLLYGPPGTGKTL 506

Query: 70  LAQVVARELGVNFRSTSGP 88
           LA+ VA E G NF +  GP
Sbjct: 507 LAKAVANESGANFIAVRGP 525



 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 8/76 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDR------DV 108
           VL  GPPG GKT +A+ VA E G +F   +GP VI+K  G+    L  + +        +
Sbjct: 221 VLLFGPPGTGKTLIAKAVANESGAHFIPIAGPEVISKYYGESEQRLREVFEEAAENAPSI 280

Query: 109 LFIDEIHRLSIIVEEI 124
           +FIDE+  ++   EE+
Sbjct: 281 IFIDELDSITPKREEV 296


>gi|322493650|emb|CBZ28940.1| putative replication factor C, subunit 2 [Leishmania mexicana
          MHOM/GT/2001/U1103]
          Length = 354

 Score = 43.5 bits (101), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 29/56 (51%), Gaps = 4/56 (7%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RPRTL E   Q EA   L+  ++        + H LF GPPG GKTT    VA EL
Sbjct: 32 RPRTLAEVEAQDEAVGALRACLK----EGANMPHFLFHGPPGTGKTTSILAVAHEL 83


>gi|321263001|ref|XP_003196219.1| cell division cycle protein 48 [Cryptococcus gattii WM276]
 gi|317462694|gb|ADV24432.1| Cell division cycle protein 48, putative [Cryptococcus gattii
           WM276]
          Length = 810

 Score = 43.5 bits (101), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ +A E   NF S  GP
Sbjct: 516 VLFYGPPGTGKTLLAKAIANECQANFISIKGP 547



 Score = 37.4 bits (85), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALL------TNLEDRDV 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L             +
Sbjct: 243 ILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPSI 302

Query: 109 LFIDEIHRLS 118
           +FIDE+  ++
Sbjct: 303 IFIDELDSIA 312


>gi|300796999|ref|NP_001179000.1| peroxisome biogenesis factor 1 [Bos taurus]
          Length = 1281

 Score = 43.5 bits (101), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA V+A E G+NF S  GP
Sbjct: 876 VLLYGPPGTGKTLLAGVIAWESGMNFISVKGP 907


>gi|71005074|ref|XP_757203.1| hypothetical protein UM01056.1 [Ustilago maydis 521]
 gi|46096565|gb|EAK81798.1| hypothetical protein UM01056.1 [Ustilago maydis 521]
          Length = 822

 Score = 43.5 bits (101), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ +A E   NF S  GP
Sbjct: 513 VLFYGPPGTGKTLLAKAIANECQANFISIKGP 544



 Score = 38.9 bits (89), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           VL  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 240 VLMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 299

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 300 IFIDEIDSIA 309


>gi|322501204|emb|CBZ36283.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 354

 Score = 43.5 bits (101), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 29/56 (51%), Gaps = 4/56 (7%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RPRTL E   Q EA   L+  ++        + H LF GPPG GKTT    VA EL
Sbjct: 32 RPRTLAEVEAQDEAVGALRACLK----EGANMPHFLFHGPPGTGKTTSILAVAHEL 83


>gi|255658787|ref|ZP_05404196.1| ATP-dependent protease, Lon family [Mitsuokella multacida DSM
           20544]
 gi|260849185|gb|EEX69192.1| ATP-dependent protease, Lon family [Mitsuokella multacida DSM
           20544]
          Length = 651

 Score = 43.5 bits (101), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           + LLRPR   E  GQ  A  +L      AK  +    H+L  GPPG+GKTT A++V
Sbjct: 181 MELLRPRDFSEIVGQERAVKSL-----LAKLSSPYPQHLLLYGPPGVGKTTAARLV 231


>gi|224070955|ref|XP_002303302.1| predicted protein [Populus trichocarpa]
 gi|222840734|gb|EEE78281.1| predicted protein [Populus trichocarpa]
          Length = 844

 Score = 43.5 bits (101), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDR--DV 108
           +L  GPPG+GKT LA+ VA E GVNF S S     +      A  + AL    ++    V
Sbjct: 419 ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRALYQEAKENAPSV 478

Query: 109 LFIDEI 114
           +FIDE+
Sbjct: 479 VFIDEL 484


>gi|167042803|gb|ABZ07521.1| putative ATPase family associated with various cellular activities
           (AAA) [uncultured marine microorganism
           HF4000_ANIW137I15]
          Length = 414

 Score = 43.5 bits (101), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 54/118 (45%), Gaps = 25/118 (21%)

Query: 26  TLEEFT-GQVEACSNLKVFIEAAKARAEA----------LDHVLFVGPPGLGKTTLAQVV 74
           TL+EF  GQ  A   L V I     R EA            +VL +GP G GKT LAQ +
Sbjct: 70  TLDEFVVGQELAKRVLSVAIHNHYKRIEANVDLNDVEIQKSNVLLIGPTGSGKTLLAQTM 129

Query: 75  ARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE------DRDVLFIDEIHRLS 118
           AR L V F       + +AG +          LL N +      +R +++IDEI ++S
Sbjct: 130 ARILDVPFAIVDATTLTEAGYVGEDVENIILKLLQNADYDVQRAERGIIYIDEIDKIS 187


>gi|71000221|ref|XP_754814.1| peroxisome biosynthesis protein (PAS8/Peroxin-6) [Aspergillus
            fumigatus Af293]
 gi|66852451|gb|EAL92776.1| peroxisome biosynthesis protein (PAS8/Peroxin-6), putative
            [Aspergillus fumigatus Af293]
          Length = 1442

 Score = 43.5 bits (101), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%)

Query: 41   KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
            ++F +  K R+     +LF GPPG GKT LA+ +A E  +NF S  GP
Sbjct: 1050 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSVKGP 1093


>gi|58260308|ref|XP_567564.1| MMS2 [Cryptococcus neoformans var. neoformans JEC21]
 gi|134116242|ref|XP_773075.1| hypothetical protein CNBJ0700 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50255696|gb|EAL18428.1| hypothetical protein CNBJ0700 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57229614|gb|AAW46047.1| MMS2, putative [Cryptococcus neoformans var. neoformans JEC21]
          Length = 810

 Score = 43.5 bits (101), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ +A E   NF S  GP
Sbjct: 516 VLFYGPPGTGKTLLAKAIANECQANFISIKGP 547



 Score = 37.4 bits (85), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALL------TNLEDRDV 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L             +
Sbjct: 243 ILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPSI 302

Query: 109 LFIDEIHRLS 118
           +FIDE+  ++
Sbjct: 303 IFIDELDSIA 312


>gi|307110140|gb|EFN58376.1| hypothetical protein CHLNCDRAFT_59565 [Chlorella variabilis]
          Length = 340

 Score = 43.5 bits (101), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 6/62 (9%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE-LGVN 81
          RP  +++  G VEA S L++  E        + +++  GPPG GKTT    +A E LG N
Sbjct: 29 RPTRIKDIVGNVEAVSRLQIIAEEGN-----MPNIILAGPPGTGKTTSILCLAHELLGPN 83

Query: 82 FR 83
          FR
Sbjct: 84 FR 85


>gi|317129825|ref|YP_004096107.1| ATP-dependent protease La [Bacillus cellulosilyticus DSM 2522]
 gi|315474773|gb|ADU31376.1| ATP-dependent protease La [Bacillus cellulosilyticus DSM 2522]
          Length = 772

 Score = 43.5 bits (101), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 77/188 (40%), Gaps = 40/188 (21%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           +   GPPG+GKT+LA+ +AR LG NF R + G V  +A              G +   + 
Sbjct: 350 LCLAGPPGVGKTSLARSIARSLGRNFVRISLGGVRDEAEIRGHRRTYVGAMPGRIIQGMK 409

Query: 102 NLEDRD-VLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152
             E  + V  +DEI ++        S  + E+L P   +   D  + E         +LS
Sbjct: 410 KAETINPVFLLDEIDKMASDFRGDPSAAMLEVLDPEQNNSFSDHYIEE-------PYDLS 462

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL---------KTIVQRGAKLTGLAV 203
           +   I     +G +  PL DR  I     + E+E L         K + + G     L V
Sbjct: 463 KVMFIMTANNIGAIPAPLMDRMEIINIAGYTEVEKLNIAQEYLLPKQVKEHGLTKGKLQV 522

Query: 204 TDEAACEI 211
            +EA  ++
Sbjct: 523 KEEAILKV 530


>gi|145614662|ref|XP_361944.2| conserved hypothetical protein [Magnaporthe oryzae 70-15]
 gi|145021569|gb|EDK05698.1| conserved hypothetical protein [Magnaporthe oryzae 70-15]
          Length = 384

 Score = 43.5 bits (101), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 5/60 (8%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          +   RP+TL + T Q    + L+  ++A+      L H+LF GPPG GKT+    +A+EL
Sbjct: 37 VEKYRPKTLSDVTAQDHTVTVLQRTLQASN-----LPHMLFYGPPGTGKTSTVLALAKEL 91


>gi|15894948|ref|NP_348297.1| recombination factor protein RarA [Clostridium acetobutylicum ATCC
           824]
 gi|15024632|gb|AAK79637.1|AE007676_7 Predicted ATPase related to the helicase subunit of the Holliday
           junction resolvase [Clostridium acetobutylicum ATCC 824]
 gi|325509085|gb|ADZ20721.1| recombination factor protein RarA [Clostridium acetobutylicum EA
           2018]
          Length = 421

 Score = 43.5 bits (101), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 62/142 (43%), Gaps = 8/142 (5%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP    E  GQ       K+     K+    + +++F GPPG GKTT+A ++A++    
Sbjct: 8   IRPENFNEVFGQKHIIGEGKILDRILKS--SLVPNMIFYGPPGTGKTTVANIIAKKTNKA 65

Query: 82  FRSTSGPV--IAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           F   +     +    ++      L  R+  +L++DEI   +   ++ L   ME+  + L+
Sbjct: 66  FYKLNATTASVKDVREITDSTNTLMGRNGVLLYLDEIQNFNKKQQQSLLEFMENGSITLI 125

Query: 138 VG--EGPSARSVKINLSRFTLI 157
               E P        LSR T+ 
Sbjct: 126 ASTTENPYFYVYNAILSRSTIF 147


>gi|328864072|gb|EGG13171.1| cell division cycle protein cdc48 [Melampsora larici-populina
           98AG31]
          Length = 820

 Score = 43.5 bits (101), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 520 VLFYGPPGTGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCV 579

Query: 109 LFIDEIHRLS 118
           +F DE+  ++
Sbjct: 580 MFFDELDSIA 589



 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 247 ILMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNAPAI 306

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 307 IFIDEIDSIA 316


>gi|298243635|ref|ZP_06967442.1| ATP-dependent metalloprotease FtsH [Ktedonobacter racemifer DSM
           44963]
 gi|297556689|gb|EFH90553.1| ATP-dependent metalloprotease FtsH [Ktedonobacter racemifer DSM
           44963]
          Length = 676

 Score = 43.5 bits (101), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 38/66 (57%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           VL VGPPG GKT LA+ VA E GV F S SG    +   G  A+ + +L D+       +
Sbjct: 238 VLLVGPPGTGKTLLARAVAGEAGVPFFSMSGSEFVEVLVGVGASRVRDLFDQAKKASPSI 297

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 298 IFIDEI 303


>gi|221052961|ref|XP_002257855.1| replication factor C, subunit 2 [Plasmodium knowlesi strain H]
 gi|193807687|emb|CAQ38391.1| replication factor C, subunit 2, putative [Plasmodium knowlesi
           strain H]
          Length = 330

 Score = 43.5 bits (101), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 98/228 (42%), Gaps = 46/228 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+ L++   Q  A S LK  +     R + + H++F GPPG GKT+    +A EL    
Sbjct: 11  RPKKLDDIVHQTNAVSMLKEVV-----RTKNMPHLIFHGPPGTGKTSAINALAHELFGRD 65

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDE----IHRLSIIVEEILYPAMEDF------ 132
             +   +   A D         DR +  + E      R+SI   +I     E        
Sbjct: 66  NISERVLELNASD---------DRGINVVREKIKAYTRISISKNKINSETNETLPPWKLV 116

Query: 133 ---QLDLMVGEGPSA--RSVKI--NLSRFTLIAATTRVGLLTNPLQDRF------GIPIR 179
              + D+M  +  SA  R ++I  N++RF LI     +  +++P+  R       GIPI 
Sbjct: 117 VLDEADMMTEDAQSALRRIIEIYSNVTRFILIC--NYIHKISDPIYSRCSCYRFQGIPID 174

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
           +   + E L  I     K  G+ + D+A  +I   ++G  R A  +L+
Sbjct: 175 V---KKEKLLYI----CKSEGINILDDALDKIIETTQGDLRRAVSILQ 215


>gi|134083012|emb|CAK42775.1| unnamed protein product [Aspergillus niger]
          Length = 342

 Score = 43.5 bits (101), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 5/56 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           RP TLE+ +G  +  + +  F+EA +     L H+L  GPPG GKT+    +AR +
Sbjct: 51  RPNTLEDVSGHQDILATINKFVEANR-----LPHLLLYGPPGTGKTSTILALARRI 101


>gi|322778907|gb|EFZ09323.1| hypothetical protein SINV_15414 [Solenopsis invicta]
          Length = 1027

 Score = 43.5 bits (101), Expect = 0.048,   Method: Composition-based stats.
 Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 37/128 (28%)

Query: 23  RPRTLEEFTGQV--EACS-NLKVFIE---------------AAKARAEALDHVLFVGPPG 64
           RP+T+++  GQ   ++C+ NL +++                A +   ++    L  GPPG
Sbjct: 478 RPKTMKQIVGQQGDKSCAHNLYIWLRDWHKNRQDPKVKNGTAKQTHGQSFKAALLSGPPG 537

Query: 65  LGKTTLAQVVARELG-----VNFRSTSGPVIAKAGDLAALLTNLEDRD------------ 107
           +GKTT  QVV +ELG      N   T    + K   ++ LL+N   +D            
Sbjct: 538 VGKTTTVQVVCKELGYDLLEFNASDTRNKTLLKEA-ISGLLSNTTMKDYVTGTKQKITSK 596

Query: 108 -VLFIDEI 114
            VL +DE+
Sbjct: 597 HVLLMDEV 604


>gi|313673405|ref|YP_004051516.1| membrane protease ftsh catalytic subunit [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312940161|gb|ADR19353.1| membrane protease FtsH catalytic subunit [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 603

 Score = 43.5 bits (101), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 38/66 (57%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL VGPPG GKT LA+ VA E GV F S SG    +   G  A+ + +L D+       +
Sbjct: 190 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFDQGKKNAPCI 249

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 250 IFIDEI 255


>gi|307594201|ref|YP_003900518.1| AAA family ATPase [Vulcanisaeta distributa DSM 14429]
 gi|307549402|gb|ADN49467.1| AAA family ATPase, CDC48 subfamily [Vulcanisaeta distributa DSM
           14429]
          Length = 737

 Score = 43.5 bits (101), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 54/118 (45%), Gaps = 17/118 (14%)

Query: 24  PRTLEEFTGQV-EACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVV 74
           PR   E  G + EA   ++  +E      E  ++        VL +GPPG GKT LA+ V
Sbjct: 180 PRVTWEDIGDLKEAKEKIRELVELPLKHPEIFEYLGIEPPKGVLLIGPPGTGKTLLAKAV 239

Query: 75  ARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DVLFIDEIHRLSIIVEEI 124
           A E    F + +GP I     G+  A L  + +        ++FIDEI  ++   EE+
Sbjct: 240 ATETNAYFIAINGPEIVSKYYGESEAKLREIFEEAKKNAPAIIFIDEIDAIAPKREEV 297



 Score = 39.7 bits (91), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT LA+ VA E   NF +  GP I
Sbjct: 498 ILLFGPPGTGKTLLAKAVATESNANFIAVRGPEI 531


>gi|301117462|ref|XP_002906459.1| replication factor C subunit 4 [Phytophthora infestans T30-4]
 gi|262107808|gb|EEY65860.1| replication factor C subunit 4 [Phytophthora infestans T30-4]
          Length = 339

 Score = 43.5 bits (101), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 6/62 (9%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81
          RP+ ++E + Q    + LK  I   +     L H+LF GPPG GKT+    V R+L G +
Sbjct: 24 RPKNVDEISHQEHVVATLKTSIANGQ-----LPHLLFYGPPGTGKTSTIVAVGRQLFGPD 78

Query: 82 FR 83
          FR
Sbjct: 79 FR 80


>gi|225718574|gb|ACO15133.1| Replication factor C subunit 2 [Caligus clemensi]
          Length = 325

 Score = 43.5 bits (101), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 6/66 (9%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE- 77
          I   RP+T ++  G  E  S LKVF E          +++  GPPG+GKTT    +AR  
Sbjct: 13 IEKYRPKTFDDIVGNSETVSRLKVFSEDGNP-----PNIIIAGPPGVGKTTTILCLARAL 67

Query: 78 LGVNFR 83
          LG +F+
Sbjct: 68 LGGSFK 73


>gi|327400638|ref|YP_004341477.1| AAA family ATPase [Archaeoglobus veneficus SNP6]
 gi|327316146|gb|AEA46762.1| AAA family ATPase, CDC48 subfamily [Archaeoglobus veneficus SNP6]
          Length = 734

 Score = 43.5 bits (101), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 8/76 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DV 108
           VL  GPPG GKT +A+ VA E+  +F S SGP I     G+    L  + +        +
Sbjct: 218 VLLYGPPGTGKTLIAKAVANEVNAHFISISGPEIMSKYYGESEQRLREIFEEAKENAPSI 277

Query: 109 LFIDEIHRLSIIVEEI 124
           +FIDEI  ++   EE+
Sbjct: 278 IFIDEIDSIAPKREEV 293



 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 493 ILLFGPPGTGKTLLAKAVANESNANFISVKGP 524


>gi|320353584|ref|YP_004194923.1| response regulator receiver protein [Desulfobulbus propionicus DSM
           2032]
 gi|320122086|gb|ADW17632.1| response regulator receiver protein [Desulfobulbus propionicus DSM
           2032]
          Length = 715

 Score = 43.5 bits (101), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 99/255 (38%), Gaps = 52/255 (20%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           L +P  L+E    V+     K+F++  K        + F GPPG GKT++ + +A  L  
Sbjct: 222 LGKPVNLDELRKTVKEVLEKKLFVQMGKGPI-----LCFTGPPGTGKTSVGKAIAEALQR 276

Query: 81  NFRSTSGPVIAKAGDL------------AALLTNLE----DRDVLFIDEIHRL------- 117
            F   S   +    +L              ++T L+    +  VL +DEI ++       
Sbjct: 277 QFIRISLAGLRDEAELRGHRRTYVGALPGRVITELKRAGVNNPVLMLDEIDKIGQDFRGD 336

Query: 118 -SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
            + ++ E+L P       D  +        +  +LSR   IA    V  L  PL DR   
Sbjct: 337 PASVLLEVLDPEQNTHFTDHYL-------ELPFDLSRVMFIATANDVSTLPRPLLDRMEC 389

Query: 177 PIRLNFYEIEDL----KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
                + E E L    + I+ R  KL GL     +   +A  S    R+       + D+
Sbjct: 390 IEFSGYTEKEKLHIAQQFILPRQLKLAGL-----SKFSVAFTSEALSRV-------INDY 437

Query: 233 AEVAHAKTITREIAD 247
              +  + + R+I+D
Sbjct: 438 TRESGLRNLERQISD 452


>gi|296413660|ref|XP_002836527.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295630354|emb|CAZ80718.1| unnamed protein product [Tuber melanosporum]
          Length = 560

 Score = 43.5 bits (101), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 8/73 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
           +L++  G+ E   +L  F+       E   H        VL  GPPG GKT LA  +ARE
Sbjct: 37  SLQDIGGREEVVDDLLKFMTMPLTHPEVYLHTGVDLPHGVLLHGPPGCGKTMLANAIARE 96

Query: 78  LGVNFRSTSGPVI 90
           +G+ F + S P I
Sbjct: 97  VGLPFIAFSAPSI 109



 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ +A E G NF +  GP
Sbjct: 354 VLLWGPPGCGKTLLAKAIANESGANFINIRGP 385


>gi|302902832|ref|XP_003048729.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256729663|gb|EEU43016.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 1138

 Score = 43.5 bits (101), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%)

Query: 41  KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           ++F +  K R+     +LF GPPG GKT LA+ +A E  +NF S  GP
Sbjct: 776 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEYSLNFFSVKGP 819


>gi|164662603|ref|XP_001732423.1| hypothetical protein MGL_0198 [Malassezia globosa CBS 7966]
 gi|159106326|gb|EDP45209.1| hypothetical protein MGL_0198 [Malassezia globosa CBS 7966]
          Length = 778

 Score = 43.5 bits (101), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 469 VLFYGPPGTGKTLLAKAIAHECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCV 528

Query: 109 LFIDEIHRLS 118
           +F DE+  ++
Sbjct: 529 MFFDELDSIA 538



 Score = 38.9 bits (89), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           VL  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 196 VLMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 255

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 256 IFIDEIDSIA 265


>gi|118085819|ref|XP_418655.2| PREDICTED: similar to peroxisome biogenesis disorder protein 1
           [Gallus gallus]
          Length = 1290

 Score = 43.5 bits (101), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 21/32 (65%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  G PG GKT LA VVARE G+NF S  GP
Sbjct: 885 VLLYGAPGTGKTLLAGVVARESGMNFISVKGP 916


>gi|299140335|ref|ZP_07033498.1| ATP-dependent protease La [Acidobacterium sp. MP5ACTX8]
 gi|298597669|gb|EFI53844.1| ATP-dependent protease La [Acidobacterium sp. MP5ACTX8]
          Length = 809

 Score = 43.5 bits (101), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 101/235 (42%), Gaps = 58/235 (24%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           + F GPPG+GKT+L   +A+  G  F R + G V  +A              G +   + 
Sbjct: 354 LCFAGPPGVGKTSLGMSIAKATGRKFVRMSLGGVRDEAEIRGHRRTYIGALPGQIIQSMK 413

Query: 102 NLEDRD-VLFIDEIHRL--------SIIVEEILYP----AMEDFQLDLMVGEGPSARSVK 148
               ++ V+ +DEI ++        +  + E+L P      +D  LD           V+
Sbjct: 414 KAGTKNPVIMLDEIDKMASDFRGDPASALLEVLDPEQNNTFQDHYLD-----------VE 462

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY-EIEDL----KTIVQRGAKLTGL-- 201
            +LS+   +A    +  +  PLQDR  I +RL  Y E+E L    + +V++  + TGL  
Sbjct: 463 YDLSQVLFVATANVLHTIPGPLQDRMEI-LRLTGYTEVEKLEIAKQYLVKKQLEATGLNA 521

Query: 202 ---AVTDEAACEIAMRS------RGTPRIAGRLLRRV-RDFAE-VAHAKTITREI 245
              + TD+A  EI          R   R  G L R+V R   E  AH   +T E+
Sbjct: 522 EQISFTDDALREIIRNYTREAGVRNLEREIGNLCRKVARKVVENSAHTIVVTPEV 576


>gi|46110661|ref|XP_382388.1| hypothetical protein FG02212.1 [Gibberella zeae PH-1]
          Length = 485

 Score = 43.5 bits (101), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 32/57 (56%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEI 114
           LF GPPG GK++L+  +A E G++      P +A   DL  +   +  R V+ +++I
Sbjct: 266 LFYGPPGTGKSSLSVAIAGEFGLDLYEVKIPSVATDADLEQMFQEIPPRCVVLLEDI 322


>gi|325479719|gb|EGC82809.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Anaerococcus
           prevotii ACS-065-V-Col13]
          Length = 402

 Score = 43.5 bits (101), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 59/131 (45%), Gaps = 29/131 (22%)

Query: 17  ADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEALD----------HVLFVG 61
            DI L  P+ +++F      GQ +A   L V +     R  + +          ++L +G
Sbjct: 54  GDIDLSTPKEIKDFLDSYVIGQDDAKKTLSVAVYNHYKRINSNEEDSDIELQKSNILMLG 113

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------------EDRD 107
           P G GKT LAQ +AR+L V F       + +AG +   + N+               +R 
Sbjct: 114 PTGSGKTLLAQTLARKLNVPFAIADATSLTEAGYVGEDVENIILKLVQAADYDIEVAERG 173

Query: 108 VLFIDEIHRLS 118
           ++++DEI +++
Sbjct: 174 IIYVDEIDKIT 184


>gi|224010519|ref|XP_002294217.1| nuclear vcp-like-like protein [Thalassiosira pseudonana CCMP1335]
 gi|220970234|gb|EED88572.1| nuclear vcp-like-like protein [Thalassiosira pseudonana CCMP1335]
          Length = 605

 Score = 43.5 bits (101), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ +A E G NF S  GP
Sbjct: 359 VLLYGPPGCGKTLLAKAIANESGANFISVKGP 390



 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 17/32 (53%), Positives = 21/32 (65%)

Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
          VL  GPPG GKT LA+ +A EL V++   S P
Sbjct: 37 VLLRGPPGCGKTHLAKAIAGELNVSYFQVSAP 68


>gi|145592432|ref|YP_001154434.1| TIP49-like protein [Pyrobaculum arsenaticum DSM 13514]
 gi|145284200|gb|ABP51782.1| TBP-interacting protein TIP49 [Pyrobaculum arsenaticum DSM 13514]
          Length = 450

 Score = 43.5 bits (101), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 28/50 (56%)

Query: 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
          F GQ EA     + ++  K    A   VL VGPPG GKT LA  +ARELG
Sbjct: 39 FVGQTEAREAAYIIVQMIKEGKFAGRGVLIVGPPGTGKTALALGIARELG 88


>gi|313896921|ref|ZP_07830468.1| ATP-dependent protease, Lon family [Selenomonas sp. oral taxon 137
           str. F0430]
 gi|312974368|gb|EFR39836.1| ATP-dependent protease, Lon family [Selenomonas sp. oral taxon 137
           str. F0430]
          Length = 847

 Score = 43.5 bits (101), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 8/79 (10%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV---A 75
           + LLRP+  +E  GQ  A  +L      AK  +    H+L  GPPG+GKTT A++V   A
Sbjct: 171 MELLRPQNFDEIIGQERAVRSL-----MAKLSSPYPQHLLLYGPPGVGKTTAARLVLEAA 225

Query: 76  RELGVNFRSTSGPVIAKAG 94
           ++  V+    S P +   G
Sbjct: 226 KKRAVSPFGESAPFVETDG 244


>gi|322421229|ref|YP_004200452.1| ATP-dependent protease La [Geobacter sp. M18]
 gi|320127616|gb|ADW15176.1| ATP-dependent protease La [Geobacter sp. M18]
          Length = 815

 Score = 43.5 bits (101), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 99/240 (41%), Gaps = 53/240 (22%)

Query: 59  FVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA----------GDLAA-LLTNLE-- 104
           FVGPPG+GKT+L + +AR +G  F R + G V  +A          G L   ++  L+  
Sbjct: 361 FVGPPGVGKTSLGKSIARAMGRKFVRISLGGVRDEAEIRGHRRTYVGALPGRIIQGLKQA 420

Query: 105 --DRDVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRF 154
             +  V  +DE+ +L        S  + E+L P   +   D  +       ++  NLS  
Sbjct: 421 GSNNPVFMLDELDKLGSDFRGDPSSALLEVLDPEQNNSFSDHYI-------NLPFNLSNV 473

Query: 155 TLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL----KTIVQRGAKLTGLAVTDEAACE 210
             IA   ++  +  PL+DR  +     + E E L    + +V R  K  G++       E
Sbjct: 474 MFIATANQMDTIPGPLRDRMEVITLAGYTEEEKLGIAKRYLVPRQVKENGISEDIAVFSE 533

Query: 211 IAMRS-----------RGTPRIAGRLLRRV-RDFAE------VAHAKTITREIADAALLR 252
            A+R+           R   R  G + R+V R  AE      V  A T+ + +     LR
Sbjct: 534 EALRTIISKYTREAGLRNLEREIGSVCRKVARKVAEGRGEKFVITAGTVAKYLGPPKFLR 593


>gi|253582122|ref|ZP_04859346.1| DNA polymerase III gamma and tau [Fusobacterium varium ATCC
          27725]
 gi|251836471|gb|EES65008.1| DNA polymerase III gamma and tau [Fusobacterium varium ATCC
          27725]
          Length = 484

 Score = 43.5 bits (101), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 33/60 (55%), Gaps = 8/60 (13%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH-VLFVGPPGLGKTTLAQVVARELGVN 81
          RP+  EE  GQ E    LK     A  R     H  LF GP G+GKTT+A+++A+  GVN
Sbjct: 10 RPKNFEEIAGQKEIVKTLK-----ASLRNGKTSHAYLFTGPRGVGKTTIARLIAK--GVN 62


>gi|45357990|ref|NP_987547.1| replication factor C small subunit [Methanococcus maripaludis S2]
 gi|50400879|sp|Q6M044|RFCS_METMP RecName: Full=Replication factor C small subunit; Short=RFC small
          subunit; AltName: Full=Clamp loader small subunit
 gi|44920747|emb|CAF29983.1| Replication factor C, small subunit [Methanococcus maripaludis
          S2]
          Length = 315

 Score = 43.5 bits (101), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP TL E  G  E    L  ++E      +++ H+LF G PG+GKTT A  +A++L
Sbjct: 10 RPETLSEVVGHHEIIKRLTNYVEK-----KSMPHLLFSGSPGVGKTTAALALAKDL 60


>gi|85117512|ref|XP_965276.1| peroxisomal biogenesis factor 6 [Neurospora crassa OR74A]
 gi|51701798|sp|Q7SGP2|PEX6_NEUCR RecName: Full=Peroxisomal biogenesis factor 6; AltName:
            Full=Peroxin-6
 gi|28927082|gb|EAA36040.1| peroxisomal biogenesis factor 6 [Neurospora crassa OR74A]
          Length = 1381

 Score = 43.5 bits (101), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%)

Query: 41   KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
            ++F +  K R+     +LF GPPG GKT LA+ +A E  +NF S  GP
Sbjct: 1015 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEYSLNFFSVKGP 1058


>gi|326488723|dbj|BAJ97973.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 830

 Score = 43.5 bits (101), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ VA E   NF S  GP
Sbjct: 518 VLFFGPPGCGKTLLAKAVASESTANFISVKGP 549



 Score = 40.4 bits (93), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           VL  GPPG GKT +A+ VA E G  F   +GP I    AGD  A L    E+ +     +
Sbjct: 245 VLLHGPPGTGKTLIARAVANETGAFFFLINGPEIMSKMAGDSEANLRRAFEEAEKNAPAI 304

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 305 IFIDEIDSIA 314


>gi|226939793|ref|YP_002794866.1| ClpX [Laribacter hongkongensis HLHK9]
 gi|226714719|gb|ACO73857.1| ClpX [Laribacter hongkongensis HLHK9]
          Length = 422

 Score = 43.5 bits (101), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 62/129 (48%), Gaps = 22/129 (17%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           RE L    + QE A  +L     +     ++ A S+ K  +E +K+      ++L +GP 
Sbjct: 72  REALDQYVIGQEQAKKAL--SVAVYNHYKRLNAKSDDKNEVELSKS------NILLIGPT 123

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL----------EDRDVL 109
           G GKT LAQ +AR L V F       + +AG    D+ +++T L            R ++
Sbjct: 124 GSGKTLLAQTLARVLDVPFAIADATTLTEAGYVGEDVESIITKLLQKCDYDAQKAQRGII 183

Query: 110 FIDEIHRLS 118
           +IDEI ++S
Sbjct: 184 YIDEIDKIS 192


>gi|119719771|ref|YP_920266.1| TIP49-like [Thermofilum pendens Hrk 5]
 gi|119524891|gb|ABL78263.1| TBP-interacting protein TIP49 [Thermofilum pendens Hrk 5]
          Length = 441

 Score = 43.5 bits (101), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 2/66 (3%)

Query: 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG--VNFRSTSG 87
            GQ+EA     + ++  KA   A   +L VGPPG GKT +A  +ARELG    F + SG
Sbjct: 31 LVGQIEARRAAWLVVQLIKAGKMAGRAILLVGPPGTGKTAIAVAIARELGPETPFMALSG 90

Query: 88 PVIAKA 93
            I  A
Sbjct: 91 SEIYSA 96


>gi|51893679|ref|YP_076370.1| cell division protein [Symbiobacterium thermophilum IAM 14863]
 gi|81388257|sp|Q67LC0|FTSH1_SYMTH RecName: Full=ATP-dependent zinc metalloprotease FtsH 1
 gi|51857368|dbj|BAD41526.1| cell division protein [Symbiobacterium thermophilum IAM 14863]
          Length = 594

 Score = 43.5 bits (101), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 38/69 (55%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           +L  GPPG GKT LA+ +A E GV F S SG    +  AG  AA +  L DR       +
Sbjct: 182 ILLSGPPGTGKTLLARALAGEAGVPFFSASGSDFVELFAGTGAARVRALFDRARKAAPCI 241

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 242 VFIDEIDAL 250


>gi|20093446|ref|NP_613293.1| replication factor C (ATPase involved in DNA replication) intein
           containing [Methanopyrus kandleri AV19]
 gi|42559498|sp|Q8TZC4|RFCS_METKA RecName: Full=Replication factor C small subunit; Short=RFC small
           subunit; AltName: Full=Clamp loader small subunit;
           Contains: RecName: Full=Mkn RFC intein
 gi|19886265|gb|AAM01223.1| Replication factor C (ATPase involved in DNA replication) intein
           containing [Methanopyrus kandleri AV19]
          Length = 635

 Score = 43.5 bits (101), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 17/104 (16%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +   RP+ L++   Q      LK ++         + ++LF GPPG GKTT A  +AREL
Sbjct: 14  VEKYRPKRLDDIVDQEHVVERLKAYVNRGD-----MPNLLFAGPPGTGKTTAALCLAREL 68

Query: 79  -GVNFR----------STSGPVIAKAGDLAALLTNLEDRDVLFI 111
            G ++R          S   P++ + G    L    ED D  + 
Sbjct: 69  FGEHWRDNFLELNASVSADTPILVRRGG-EVLRVTFEDLDSWYF 111


>gi|162312520|ref|XP_001713099.1| DNA replication factor C complex subunit Rfc3
          [Schizosaccharomyces pombe 972h-]
 gi|13431787|sp|O14003|RFC3_SCHPO RecName: Full=Replication factor C subunit 3; Short=Replication
          factor C3
 gi|4468733|emb|CAB38106.1| replication factor C subunit [Schizosaccharomyces pombe]
 gi|5688939|dbj|BAA82745.1| Rfc3 [Schizosaccharomyces pombe]
 gi|5688941|dbj|BAA82746.1| Rfc3 [Schizosaccharomyces pombe]
 gi|159884003|emb|CAB39134.2| DNA replication factor C complex subunit Rfc3
          [Schizosaccharomyces pombe]
          Length = 342

 Score = 43.5 bits (101), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 6/63 (9%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81
          RP  LE+     +  S L+ FI + +     + H+LF GPPG GKT+     AR++ G N
Sbjct: 30 RPANLEDVVSHKDIISTLEKFISSNR-----VPHMLFYGPPGTGKTSTILACARKIYGPN 84

Query: 82 FRS 84
          +R+
Sbjct: 85 YRN 87


>gi|148253363|ref|YP_001237948.1| cell division protein FtsH [Bradyrhizobium sp. BTAi1]
 gi|146405536|gb|ABQ34042.1| membrane protease FtsH catalytic subunit [Bradyrhizobium sp. BTAi1]
          Length = 618

 Score = 43.5 bits (101), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 64/135 (47%), Gaps = 18/135 (13%)

Query: 1   MMDREG---LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLK---VFIEAAKARAEAL 54
           +MDR+G   L+S   S+    +      T  +  G  EA   L+    F++  K+     
Sbjct: 132 VMDRQGFGGLMSIGKSRAKVYVETDTKVTFADVAGVDEAKFELQEVVQFLKDPKSYGRLG 191

Query: 55  DHV----LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD- 107
            HV    L VGPPG GKT LA+ VA E GV F S SG    +   G  AA + +L ++  
Sbjct: 192 AHVPKGILLVGPPGTGKTLLARAVAGEAGVAFFSISGSEFVEMFVGVGAARVRDLFEQAR 251

Query: 108 -----VLFIDEIHRL 117
                ++FIDE+  L
Sbjct: 252 KAAPCIIFIDELDAL 266


>gi|326492255|dbj|BAK01911.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1084

 Score = 43.5 bits (101), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT LA  V+RE G+NF S  GP
Sbjct: 771 LLLFGPPGCGKTLLAGAVSRETGMNFISVKGP 802


>gi|300778485|ref|ZP_07088343.1| DNA polymerase III, gamma/tau subunit DnaX [Chryseobacterium gleum
           ATCC 35910]
 gi|300503995|gb|EFK35135.1| DNA polymerase III, gamma/tau subunit DnaX [Chryseobacterium gleum
           ATCC 35910]
          Length = 368

 Score = 43.5 bits (101), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 98/225 (43%), Gaps = 31/225 (13%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  +   GQ      L+  IE ++  A+AL   LF GP G+GKTT A+++AR++    
Sbjct: 12  RPQEFDTVVGQSHITDTLEHAIEESQL-AQAL---LFCGPRGVGKTTCARILARKINEKD 67

Query: 83  RSTSGPVIA-KAGDLAALLTNLED------RDVLFIDEIHRLSI-IVEEILYPAMEDFQL 134
            S S    A    +L A   N  D        V F  ++ +  + I++E+   +   F  
Sbjct: 68  GSVSEDGFAYNIYELDAASNNSVDDIRELIDQVRFAPQVGKYKVYIIDEVHMLSSAAFNA 127

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE-----IEDLK 189
            L   E P A ++ I       +A T +  ++   L        R   Y+     IED++
Sbjct: 128 FLKTLEEPPAHAIFI-------LATTEKHKIIPTILS-------RCQIYDFKRIVIEDIQ 173

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
             ++  A+   +   D+A   IA ++ G  R A  +  R+  F++
Sbjct: 174 NHLRNIAEKENIRYEDDALYLIAQKADGALRDALSIFDRLSTFSQ 218


>gi|212550899|ref|YP_002309216.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus
           Azobacteroides pseudotrichonymphae genomovar. CFP2]
 gi|212549137|dbj|BAG83805.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Candidatus
           Azobacteroides pseudotrichonymphae genomovar. CFP2]
          Length = 410

 Score = 43.5 bits (101), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLT--------NL 103
           ++L VG  G GKT LA+ +AR L V F      V+ +AG    D+ +LLT        NL
Sbjct: 112 NILLVGATGTGKTLLAKTIARLLKVPFTIVDATVLTEAGYVGEDIESLLTRLLQVADFNL 171

Query: 104 E--DRDVLFIDEIHRLS 118
           E  ++ ++FIDEI +++
Sbjct: 172 EATEQGIVFIDEIDKIA 188


>gi|222478820|ref|YP_002565057.1| Replication factor C [Halorubrum lacusprofundi ATCC 49239]
 gi|222451722|gb|ACM55987.1| Replication factor C [Halorubrum lacusprofundi ATCC 49239]
          Length = 327

 Score = 43.5 bits (101), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 5/60 (8%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          I   RP++L++  GQ      L+ +IE      + + H+LF GP G GKTT A  +AR++
Sbjct: 19 IEKYRPQSLDDIHGQEAIVERLQSYIEQ-----DDIPHLLFGGPAGTGKTTAATAIARQV 73


>gi|147902441|ref|NP_001085526.1| MGC80325 protein [Xenopus laevis]
 gi|49117945|gb|AAH72889.1| MGC80325 protein [Xenopus laevis]
          Length = 335

 Score = 43.5 bits (101), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+TL+E     +  S ++ FI   K     L H+LF GPPG GKT+     A++L
Sbjct: 22 RPQTLDELISHQDILSTIQRFISEDK-----LPHLLFYGPPGTGKTSTILACAKQL 72


>gi|45201490|ref|NP_987060.1| AGR394Wp [Ashbya gossypii ATCC 10895]
 gi|51701781|sp|Q74Z13|PEX6_ASHGO RecName: Full=Peroxisomal biogenesis factor 6; AltName:
           Full=Peroxin-6
 gi|44986424|gb|AAS54884.1| AGR394Wp [Ashbya gossypii ATCC 10895]
          Length = 1021

 Score = 43.5 bits (101), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +LF GPPG GKT LA+ VA    +NF S  GP
Sbjct: 759 ILFYGPPGTGKTLLAKAVATNFSLNFFSVKGP 790


>gi|294784544|ref|ZP_06749833.1| DNA polymerase III, gamma and tau subunit [Fusobacterium sp.
           3_1_27]
 gi|294487760|gb|EFG35119.1| DNA polymerase III, gamma and tau subunit [Fusobacterium sp.
           3_1_27]
          Length = 484

 Score = 43.5 bits (101), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 107/246 (43%), Gaps = 31/246 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP +  E +G+ E   +LK+ ++  K+ A A    LF GP G+GKTT+A+++A+ L    
Sbjct: 10  RPSSFSEVSGENEIVKSLKLSLKN-KSMAHAY---LFSGPRGVGKTTIARLIAKGLNCLN 65

Query: 83  RSTSGPVIAKAGDLAAL-------LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
              +G    +  +  A+       L  ++      IDEI  L    E+I Y  +E  +  
Sbjct: 66  LKENGEPCNECKNCKAINEGRFSDLIEIDAASNRSIDEIRSLK---EKINYQPVEGLKKV 122

Query: 136 LMVGEGPSARSVKINL---------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNF--YE 184
            ++ E         N          +    I ATT +  +   +  R     R +F   +
Sbjct: 123 YIIDEAHMLTKEAFNALLKTLEEPPAHVMFILATTELEKILPTIISRCQ---RYDFKPLD 179

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +E++K  ++   K   L++TD+    I   S G+ R +  +L R+      A+ K I  +
Sbjct: 180 LEEMKAGLEHILKEENLSMTDDVYSVIYENSSGSMRDSISILERL---MVTANGKEIDLK 236

Query: 245 IADAAL 250
           IA+  L
Sbjct: 237 IAEDTL 242


>gi|256750670|ref|ZP_05491556.1| Sigma 54 interacting domain protein [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|307265753|ref|ZP_07547305.1| Sigma 54 interacting domain protein [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|256750510|gb|EEU63528.1| Sigma 54 interacting domain protein [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|306919267|gb|EFN49489.1| Sigma 54 interacting domain protein [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 476

 Score = 43.5 bits (101), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 59/134 (44%), Gaps = 35/134 (26%)

Query: 56  HVLFVGPPGLGKTTLAQVVAR---ELGVNFRSTSGPVIAKAGDLAA----LLTNL----- 103
           H L VGP G+GKTT A+ + +   ++G+     S  V+    D A     LL+ L     
Sbjct: 163 HTLIVGPTGVGKTTFAEAMYKYAVQIGI-LHEKSPFVVFNCADYAENPQLLLSQLFGYVK 221

Query: 104 ----------------EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSV 147
                            D  +LF+DE+HRL    +E+L+  M+      M GE  + R  
Sbjct: 222 GAFTGADKEKRGLVDEADGGILFLDEVHRLPPEGQEMLFTLMDKGMYRRM-GESENTRKA 280

Query: 148 KINLSRFTLIAATT 161
           K+      +IAATT
Sbjct: 281 KVR-----IIAATT 289


>gi|70606370|ref|YP_255240.1| TBP-interacting proten [Sulfolobus acidocaldarius DSM 639]
 gi|68567018|gb|AAY79947.1| TBP-interacting proten [Sulfolobus acidocaldarius DSM 639]
          Length = 452

 Score = 43.5 bits (101), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 29/50 (58%)

Query: 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
            GQVEA     + ++  +    A   +LFVGPPG GKT LA  +A+ELG
Sbjct: 39 LVGQVEAREASGIVVQLIRQGKMAGKGILFVGPPGTGKTALAVAIAKELG 88


>gi|68070283|ref|XP_677053.1| replication factor C, subunit 2 [Plasmodium berghei strain ANKA]
 gi|56497014|emb|CAH96737.1| replication factor C, subunit 2, putative [Plasmodium berghei]
          Length = 330

 Score = 43.5 bits (101), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 98/232 (42%), Gaps = 54/232 (23%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL---- 78
           RP+ L++   Q  A S LK  I     + + + H++F GPPG GKT+    +A EL    
Sbjct: 11  RPKKLDDIVHQTNAISMLKEVI-----KTKNMPHLIFHGPPGTGKTSAINALAHELFGKE 65

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDE----IHRLSIIVEEILYPAMEDF-- 132
            +N R                L   +DR +  + E      R+SI   +I     E    
Sbjct: 66  NINERVLE-------------LNASDDRGINVVREKIKAYTRISISKNKINTETNEQLPP 112

Query: 133 -------QLDLMVGEGPSA--RSVKI--NLSRFTLIAATTRVGLLTNPLQDRF------G 175
                  + D+M  +  SA  R ++I  N++RF LI     +  +++P+  R       G
Sbjct: 113 WKLVVLDEADMMTEDAQSALRRIIEIYSNVTRFILIC--NYIHKISDPIYSRCSCYRFQG 170

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
           IPI +   + E L  I     K   + ++D A  +I   ++G  R A  +L+
Sbjct: 171 IPINI---KKEKLLYI----CKNENIDISDNALSKIIETTQGDLRRAVSVLQ 215


>gi|308070422|ref|YP_003872027.1| ATP-dependent protease La-like protein [Paenibacillus polymyxa
           E681]
 gi|305859701|gb|ADM71489.1| ATP-dependent protease La-like protein [Paenibacillus polymyxa
           E681]
          Length = 575

 Score = 43.1 bits (100), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 5/62 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP TL++  GQ +    LK  + +A  +     HV+  GPPG+GKT  A+VV  E   N 
Sbjct: 64  RPATLQDIVGQKDGLRALKAALCSANPQ-----HVIIYGPPGVGKTAAARVVLEEAKKNL 118

Query: 83  RS 84
            S
Sbjct: 119 SS 120


>gi|171186069|ref|YP_001794988.1| AAA family ATPase, CDC48 subfamily protein [Thermoproteus
           neutrophilus V24Sta]
 gi|170935281|gb|ACB40542.1| AAA family ATPase, CDC48 subfamily [Thermoproteus neutrophilus
           V24Sta]
          Length = 737

 Score = 43.1 bits (100), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 53/118 (44%), Gaps = 17/118 (14%)

Query: 24  PRTLEEFTGQVE-ACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVV 74
           PR   E  G +E A   ++  +E      E   H        +L +GPPG GKT LA+ V
Sbjct: 171 PRVTWEDIGDLEDAKQKIRELVELPLRHPELFKHLGIEPPKGILLIGPPGTGKTLLAKAV 230

Query: 75  ARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DVLFIDEIHRLSIIVEEI 124
           A E    F + +GP I     G+  A L  + +        ++FIDEI  ++   EE+
Sbjct: 231 ANEANAYFVAINGPEIMSKYYGESEARLREIFEEAKKNAPAIIFIDEIDAIAPKREEV 288



 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 17/32 (53%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG+GKT  A+ VA E G NF +  GP
Sbjct: 501 ILLFGPPGVGKTLFAKAVATESGANFIAVRGP 532


>gi|78356558|ref|YP_388007.1| FtsH peptidase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
 gi|78218963|gb|ABB38312.1| membrane protease FtsH catalytic subunit [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 665

 Score = 43.1 bits (100), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 29/60 (48%), Positives = 32/60 (53%), Gaps = 3/60 (5%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           EE T  V+  SN K F        +    VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 163 EELTEVVDFLSNPKKFTRLGGRIPKG---VLLVGPPGTGKTLLARAVAGEAGVPFFSISG 219


>gi|218768389|ref|YP_002342901.1| ATP-dependent protease ATP-binding subunit ClpX [Neisseria
           meningitidis Z2491]
 gi|21263484|sp|Q9JTX8|CLPX_NEIMA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|121052397|emb|CAM08729.1| ATP-dependent Clp protease ATP-binding subunit [Neisseria
           meningitidis Z2491]
          Length = 414

 Score = 43.1 bits (100), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 17/88 (19%)

Query: 48  KARAE---ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALL 100
           KARA    +  ++L +GP G GKT LAQ +AR+L V F       + +AG    D+  ++
Sbjct: 103 KARANVELSKSNILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQII 162

Query: 101 TNL----------EDRDVLFIDEIHRLS 118
           T L            R +++IDEI ++S
Sbjct: 163 TKLLGKCDFDVEKAQRGIVYIDEIDKIS 190


>gi|116519|sp|P05444|CLPA_RHOBL RecName: Full=ClpA homolog protein
 gi|45972|emb|CAA77308.1| URF 2 [Rhodobacter blasticus]
          Length = 793

 Score = 43.1 bits (100), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 70/161 (43%), Gaps = 23/161 (14%)

Query: 10  RNVSQEDADISLLRPRTLEEFT-GQVEACSNLKVFIEAAKA----RAEALDHVLFVGPPG 64
           RNVS++DA+      RTL+    GQ +A   L   I+ A+A      + + + LF GP G
Sbjct: 469 RNVSKDDAETLRDLERTLKRLVFGQDKAIEALSASIKLARAGLREPEKPIGNYLFTGPTG 528

Query: 65  LGKTTLAQVVARELGVNF---------------RSTSGPVIAKAGDLAALLTNLEDRD-- 107
           +GKT +A+ +A  LGV                 R    P      D   +LT+  D+   
Sbjct: 529 VGKTEVAKQLAATLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGMLTDGVDQHPH 588

Query: 108 -VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSV 147
            VL +DEI +    V  IL   M+  +L    G     R+V
Sbjct: 589 CVLLLDEIEKAHPDVYNILLQVMDHGKLTDHNGRAVDFRNV 629


>gi|329766196|ref|ZP_08257754.1| AAA family ATPase, CDC48 subfamily protein [Candidatus
           Nitrosoarchaeum limnia SFB1]
 gi|329137255|gb|EGG41533.1| AAA family ATPase, CDC48 subfamily protein [Candidatus
           Nitrosoarchaeum limnia SFB1]
          Length = 715

 Score = 43.1 bits (100), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 38/79 (48%), Gaps = 8/79 (10%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLT 101
           K   EA   VL  GPPG GKT LA+ VA E   +F S SGP I           L  +  
Sbjct: 207 KIGVEAPKGVLLYGPPGTGKTLLAKAVAGETSAHFISLSGPEIMGKYYGESEEKLREIFK 266

Query: 102 NLEDR--DVLFIDEIHRLS 118
             E+    ++FIDEI  ++
Sbjct: 267 QAEENSPSIVFIDEIDSIA 285


>gi|294101893|ref|YP_003553751.1| ATP-dependent protease La [Aminobacterium colombiense DSM 12261]
 gi|293616873|gb|ADE57027.1| ATP-dependent protease La [Aminobacterium colombiense DSM 12261]
          Length = 779

 Score = 43.1 bits (100), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 5/75 (6%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAK-ARAEALDHVL-FVGPPGLGKTTL 70
           ++E+ DI+  +    E+  G V+    +  F+   + A  EA   VL FVGPPG+GKT+L
Sbjct: 307 TEENLDITKAQRILDEDHYGLVKVKERILEFLAVRQLAGKEAKGQVLCFVGPPGVGKTSL 366

Query: 71  AQVVARELG---VNF 82
           AQ +AR LG   VNF
Sbjct: 367 AQSIARALGRRFVNF 381


>gi|302411354|ref|XP_003003510.1| peroxisomal biogenesis factor 6 [Verticillium albo-atrum
          VaMs.102]
 gi|261357415|gb|EEY19843.1| peroxisomal biogenesis factor 6 [Verticillium albo-atrum
          VaMs.102]
          Length = 413

 Score = 43.1 bits (100), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 22/32 (68%)

Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
          +LF GPPG GKT LA+ +A E  +NF S  GP
Sbjct: 62 ILFYGPPGTGKTLLAKAIATEYSLNFFSVKGP 93


>gi|257469136|ref|ZP_05633230.1| DNA polymerase III subunits gamma and tau [Fusobacterium ulcerans
          ATCC 49185]
 gi|317063383|ref|ZP_07927868.1| DNA polymerase III gamma and tau [Fusobacterium ulcerans ATCC
          49185]
 gi|313689059|gb|EFS25894.1| DNA polymerase III gamma and tau [Fusobacterium ulcerans ATCC
          49185]
          Length = 484

 Score = 43.1 bits (100), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 33/60 (55%), Gaps = 8/60 (13%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
          RP+  EE  GQ E    LK     A  R     H  LF GP G+GKTT+A+++A+  GVN
Sbjct: 10 RPKNFEEIAGQKEIVKTLK-----ASLRNGKTSHAYLFTGPRGVGKTTIARLIAK--GVN 62


>gi|325982976|ref|YP_004295378.1| ATP-dependent metalloprotease FtsH [Nitrosomonas sp. AL212]
 gi|325532495|gb|ADZ27216.1| ATP-dependent metalloprotease FtsH [Nitrosomonas sp. AL212]
          Length = 613

 Score = 43.1 bits (100), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 48/92 (52%), Gaps = 8/92 (8%)

Query: 34  VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK- 92
           VE  + LK  ++  +    A   +L VGPPG GKT LA+ VA E GV F S SG    + 
Sbjct: 169 VEIINFLKNPVDYGRLGGRAPKGILLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEM 228

Query: 93  -AGDLAALLTNLEDR------DVLFIDEIHRL 117
             G  AA + +L ++       ++FIDE+  L
Sbjct: 229 FVGVGAARVRDLFEQARQMAPAIIFIDELDAL 260


>gi|302830262|ref|XP_002946697.1| DNA replication factor C complex subunit 4 [Volvox carteri f.
          nagariensis]
 gi|300267741|gb|EFJ51923.1| DNA replication factor C complex subunit 4 [Volvox carteri f.
          nagariensis]
          Length = 328

 Score = 43.1 bits (100), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+ + E   Q E  + L   +E A      L H+LF GPPG GKT+ A  +AR+L
Sbjct: 11 RPKNVNEVAYQEEVVNTLTRALETAN-----LPHLLFYGPPGTGKTSTALAIARQL 61


>gi|302813234|ref|XP_002988303.1| hypothetical protein SELMODRAFT_426967 [Selaginella moellendorffii]
 gi|300144035|gb|EFJ10722.1| hypothetical protein SELMODRAFT_426967 [Selaginella moellendorffii]
          Length = 829

 Score = 43.1 bits (100), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 49/102 (48%), Gaps = 13/102 (12%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE-----ALDHVLFVGPPGLGKTTLAQVVARELGV 80
           T ++F GQ    + L+  ++  K   E         VL  GPPG GKT LA+ +A E G+
Sbjct: 289 TFDDFAGQDYIKAELQEVVKLLKESKEDPTVYVPKGVLLHGPPGTGKTLLARAIAGEAGL 348

Query: 81  NFRSTSGP--VIAKAGDLAALLTNLEDR------DVLFIDEI 114
            F S  G   V   AG  AA + +L  R       ++FIDEI
Sbjct: 349 PFFSVGGAEFVEMYAGVAAARVQDLFSRARNFAPSIIFIDEI 390


>gi|291001909|ref|XP_002683521.1| hypothetical protein NAEGRDRAFT_29126 [Naegleria gruberi]
 gi|284097150|gb|EFC50777.1| hypothetical protein NAEGRDRAFT_29126 [Naegleria gruberi]
          Length = 307

 Score = 43.1 bits (100), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 20/37 (54%), Positives = 23/37 (62%)

Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA 93
          VL  GPPG GKT LA+ VA E  +NF S  GP +  A
Sbjct: 60 VLLYGPPGCGKTLLAKAVATECQLNFMSVKGPELINA 96


>gi|239907451|ref|YP_002954192.1| ATP-dependent protease La [Desulfovibrio magneticus RS-1]
 gi|239797317|dbj|BAH76306.1| ATP-dependent protease La [Desulfovibrio magneticus RS-1]
          Length = 819

 Score = 43.1 bits (100), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 81/196 (41%), Gaps = 50/196 (25%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           +  VGPPG+GKT+LA+ +AR +G  F R + G V  +A              G +   L 
Sbjct: 364 LCLVGPPGVGKTSLAKSIARAMGREFVRLSLGGVRDEAEIRGHRRTYVGALPGKIIQSLK 423

Query: 102 NLE-DRDVLFIDEIHRLSI--------IVEEILYP----AMEDFQLDLMVGEGPSARSVK 148
            ++ +  V  +DE+ ++S          + E+L P    A  D  LDL            
Sbjct: 424 RVKFNNPVFCLDEVDKMSTDFRGDPSSALLEVLDPEQNYAYSDHYLDL-----------D 472

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY-EIEDL---------KTIVQRGAKL 198
            +LS+   I     +  +  PLQDR  I IR+  Y E E           K I Q G   
Sbjct: 473 YDLSKIFFITTANSLHSIPLPLQDRMEI-IRIPGYLETEKAQIGGRFLLPKNIEQHGLTP 531

Query: 199 TGLAVTDEAACEIAMR 214
             + +TDEA   I  R
Sbjct: 532 ENIQLTDEAMLTIIRR 547


>gi|258516173|ref|YP_003192395.1| AAA family ATPase, CDC48 subfamily [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257779878|gb|ACV63772.1| AAA family ATPase, CDC48 subfamily [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 709

 Score = 43.1 bits (100), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDR------DV 108
           VL  GPPG GKT +A+ VA E   +F   +GP +IAK  G+  A L N+ +R       +
Sbjct: 217 VLLYGPPGTGKTLIARAVAEETDAHFIHVNGPEIIAKFYGESEAKLRNIFERAAQNAPSI 276

Query: 109 LFIDEI 114
           +F+DE+
Sbjct: 277 IFLDEL 282



 Score = 36.6 bits (83), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 15/34 (44%), Positives = 20/34 (58%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           ++  G PG GKT LA+ +A E   NF S  GP +
Sbjct: 490 IILYGSPGTGKTLLAKAIATECNANFISIKGPAL 523


>gi|116327328|ref|YP_797048.1| ATP-dependent Zn protease [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116120072|gb|ABJ78115.1| ATP-dependent Zn protease [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
          Length = 652

 Score = 43.1 bits (100), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 38/66 (57%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL VGPPG GKT LA+ VA E GV F S SG    +   G  A+ + +L D+       +
Sbjct: 216 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFDQGKKNSPCI 275

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 276 IFIDEI 281


>gi|148656894|ref|YP_001277099.1| ATP-dependent protease La [Roseiflexus sp. RS-1]
 gi|148569004|gb|ABQ91149.1| ATP-dependent protease La [Roseiflexus sp. RS-1]
          Length = 802

 Score = 43.1 bits (100), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 84/217 (38%), Gaps = 47/217 (21%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA---GDLAALLTNLEDR------ 106
           + FVGPPG+GKT+L   +AR LG  F R   G V  +A   G     +  L  R      
Sbjct: 359 LCFVGPPGVGKTSLGASIARALGRKFVRVALGGVRDEAEIRGHRRTYIGALPGRIIQGIN 418

Query: 107 ------DVLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLS 152
                  V  +DE+ +LS+  +        E+L P      +D  +        V  +LS
Sbjct: 419 RAGSNNPVFMLDEVDKLSVGFQGDPAAALLEVLDPEQNAAFVDRYL-------DVPFDLS 471

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL----KTIVQRGAKLTGLAVTDEAA 208
           R   I    R   +   L DR  +     + E+E L    + ++QR     GLA      
Sbjct: 472 RVLFICTANRSDTIPPALLDRMELLELAGYTEMEKLEICRRYLIQRQRSEQGLAERGPTI 531

Query: 209 CEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
            E A+R            R +R++   A  + + R I
Sbjct: 532 TEAALR------------RLIREYTHEAGVRDLERRI 556


>gi|83589006|ref|YP_429015.1| endopeptidase La [Moorella thermoacetica ATCC 39073]
 gi|83571920|gb|ABC18472.1| Endopeptidase La [Moorella thermoacetica ATCC 39073]
          Length = 655

 Score = 43.1 bits (100), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 91/229 (39%), Gaps = 54/229 (23%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV---AREL 78
           LRPR LEE  GQ +A  ++      AK  +    H++  GPPG+GKTT A++    AR++
Sbjct: 173 LRPRRLEEIVGQEQAVQSI-----LAKLASPYPQHMIIYGPPGVGKTTAARLALEEARKI 227

Query: 79  GVNFRSTSGPVIAKAGD---------LAALLTNLED-------RD--------------- 107
             +    S P +   G             LL ++ D       RD               
Sbjct: 228 SSSPFKASAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAENGVPEPKLGLVT 287

Query: 108 -----VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG-EGPSARSVKINLSR-------- 153
                VLFIDEI  +  ++   L   +ED +++       P+  SV   + +        
Sbjct: 288 EAHGGVLFIDEIGEMDPLLLNKLLKVLEDKRVEFDSSYYDPNDESVPQYIKKLFTEGAPA 347

Query: 154 -FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            F LI ATTR     NP        +        D++TIV+ GA   G+
Sbjct: 348 DFILIGATTREPEEINPALRSRCAEVFFEPLTPADVETIVREGAGRLGV 396


>gi|328859221|gb|EGG08331.1| hypothetical protein MELLADRAFT_47841 [Melampsora larici-populina
          98AG31]
          Length = 346

 Score = 43.1 bits (100), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP TLEE     +    ++ FI + +     L H+LF GPPG GKT+    +AR+L
Sbjct: 32 RPSTLEEVVSHKDIIYTIQKFITSNR-----LPHLLFYGPPGTGKTSTILAIARQL 82


>gi|317507640|ref|ZP_07965352.1| ATPase [Segniliparus rugosus ATCC BAA-974]
 gi|316254077|gb|EFV13435.1| ATPase [Segniliparus rugosus ATCC BAA-974]
          Length = 609

 Score = 43.1 bits (100), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 40/108 (37%), Positives = 52/108 (48%), Gaps = 20/108 (18%)

Query: 30  FTGQVEACSNLKVFIEAAKARAEA--------LDHVLFVGPPGLGKTTLAQVVAR---EL 78
            TG  +  + L+  ++ A+ RAE           H+ F GPPG GKTT+A+VVA+    L
Sbjct: 327 MTGVKQQVARLQATVQMARLRAEKGLGGGQAKSQHLAFTGPPGTGKTTIARVVAKIYCGL 386

Query: 79  GV----NFRSTSGP--VIAKAGDLAALLTNLEDR---DVLFIDEIHRL 117
           G+    N   TS    V    G  A   T L DR    VLFIDE + L
Sbjct: 387 GLLKTANVLETSRKDFVGEHLGSTAIKTTALIDRAMDGVLFIDEAYTL 434


>gi|302760953|ref|XP_002963899.1| hypothetical protein SELMODRAFT_142036 [Selaginella moellendorffii]
 gi|300169167|gb|EFJ35770.1| hypothetical protein SELMODRAFT_142036 [Selaginella moellendorffii]
          Length = 765

 Score = 43.1 bits (100), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 49/102 (48%), Gaps = 13/102 (12%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE-----ALDHVLFVGPPGLGKTTLAQVVARELGV 80
           T ++F GQ    + L+  ++  K   E         VL  GPPG GKT LA+ +A E G+
Sbjct: 219 TFDDFAGQDYIKAELQEVVKLLKESKEDPTVYVPKGVLLHGPPGTGKTLLARAIAGEAGL 278

Query: 81  NFRSTSGP--VIAKAGDLAALLTNLEDR------DVLFIDEI 114
            F S  G   V   AG  AA + +L  R       ++FIDEI
Sbjct: 279 PFFSVGGAEFVEMYAGVAAARVQDLFSRARNFAPSIIFIDEI 320


>gi|296126569|ref|YP_003633821.1| ATP-dependent protease La [Brachyspira murdochii DSM 12563]
 gi|296018385|gb|ADG71622.1| ATP-dependent protease La [Brachyspira murdochii DSM 12563]
          Length = 825

 Score = 43.1 bits (100), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 114/291 (39%), Gaps = 68/291 (23%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF------------------RSTSGPVIAKAGDLAA 98
           + FVGPPG+GKT++ + +A  L   F                  R+  G +  K   + A
Sbjct: 384 LCFVGPPGVGKTSIGKSIAEALNRPFFRFSLGGMRDEAEIKGHRRTYIGAMPGKI--IEA 441

Query: 99  LLTNLEDRDVLFIDEIHRLSIIVE--------EILYP----AMEDFQLDLMVGEGPSARS 146
           L        VL +DEI +L    +        E+L P    +  D  LDL          
Sbjct: 442 LKIVKVKNPVLMLDEIDKLGTSFQGDPSSALLEVLDPEQNSSFRDHYLDL---------- 491

Query: 147 VKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL-----KTIVQRGAKLTGL 201
              +LS    I     +  +  PL DR  + IRL+ Y +E+      K I+ R  K  GL
Sbjct: 492 -PFDLSNVLFITTANTLDTIPRPLLDRMEV-IRLSGYIMEEKLKIASKYIIPRQVKANGL 549

Query: 202 AVTDEAACEIAMRS--RGTPRIAG------RLLRRVRDFAE--VAHAKTITREIAD---- 247
            + +      A+ S   G  R AG      R+ R  R  A   V++ KT    I D    
Sbjct: 550 DIKNIKFTNKAISSIIEGYAREAGVRNFERRIERICRKIAADIVSNNKTSYDIIVDDKDL 609

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIA---RNFGGGPVGIETISAGLSEPRDA 295
              L+  I    F + DL+    I     + GG  + IE+I   +SE +DA
Sbjct: 610 EKYLKKPIFTEDFTERDLKPGNAIGLAWTSMGGATLTIESIR--VSEKKDA 658


>gi|291165756|gb|EFE27804.1| DNA polymerase III subunit gamma/tau [Filifactor alocis ATCC 35896]
          Length = 533

 Score = 43.1 bits (100), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 104/245 (42%), Gaps = 47/245 (19%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELG 79
           + RP+T ++  GQ    S LK      +   + ++H  LF GP G GKT+ A+V+AR   
Sbjct: 8   VYRPKTFDDIVGQEHITSVLK-----NQVAEDTVNHAYLFCGPRGTGKTSTAKVLAR--A 60

Query: 80  VNFRSTSGPVI-AKAGDLAAL------------LTNLED-RD-VLFIDEIHRLSI-IVEE 123
           VN      P    K+ + ++L            + N+ D RD ++F+  + R  + I++E
Sbjct: 61  VNCTGEIKPCYQCKSCEQSSLDIIEMDAASNNSVDNIRDIRDNIVFMPSVSRYKVYIIDE 120

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +   +   F   L   E P         S    I ATT    +   +  R     R +F 
Sbjct: 121 VHMLSQGAFNALLKTLEEPP--------SHVIFILATTEPQKIPATVLSRCQ---RFDFK 169

Query: 184 EIEDL-------KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
           +I+D        K ++Q G +    AV     C I  +S G  R A  LL +V + +++ 
Sbjct: 170 KIDDSILTQQLEKVLLQEGKEFEADAV----QC-IVQKSDGGMRDALSLLDKVMNLSKLT 224

Query: 237 HAKTI 241
             + I
Sbjct: 225 KQEVI 229


>gi|289622387|emb|CBI51565.1| unnamed protein product [Sordaria macrospora]
          Length = 1359

 Score = 43.1 bits (100), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%)

Query: 41   KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
            ++F +  K R+     +LF GPPG GKT LA+ +A E  +NF S  GP
Sbjct: 997  ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEYSLNFFSVKGP 1040


>gi|281426190|ref|ZP_06257103.1| cell division protein FtsH [Prevotella oris F0302]
 gi|281399766|gb|EFB30597.1| cell division protein FtsH [Prevotella oris F0302]
          Length = 683

 Score = 43.1 bits (100), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 36/65 (55%), Gaps = 8/65 (12%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VL 109
           L VGPPG GKT LA+ VA E GV F S SG       V   A  +  + +  +D+   ++
Sbjct: 240 LLVGPPGTGKTLLAKAVAGEAGVPFFSMSGSDFVEMFVGVGASRVRDVFSQAKDKSPCII 299

Query: 110 FIDEI 114
           FIDEI
Sbjct: 300 FIDEI 304


>gi|253581057|ref|ZP_04858318.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847720|gb|EES75689.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 600

 Score = 43.1 bits (100), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 29/60 (48%), Positives = 31/60 (51%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           EE    VE    LK   +  K  A     VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 155 EEKEDLVEVVDFLKSPQKYTKVGARIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 214


>gi|171688524|ref|XP_001909202.1| hypothetical protein [Podospora anserina S mat+]
 gi|170944224|emb|CAP70334.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1117

 Score = 43.1 bits (100), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 72/177 (40%), Gaps = 33/177 (18%)

Query: 43  FIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA---- 97
           FI   K R      +L FVGPPG+GKT++ + +AR L   +   S   +A   ++     
Sbjct: 588 FIAVGKLRGTVEGKILCFVGPPGVGKTSIGKSIARALNRQYYRFSVGGLADVAEIKGHRR 647

Query: 98  ------------ALLTNLEDRDVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLM 137
                       AL     +  ++ IDEI ++        S  + E+L P      LD  
Sbjct: 648 TYVGALPGRVIQALKKCKTENPLILIDEIDKIGRGYQGDPSSALLELLDPEQNSSFLDHY 707

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           +        V ++LSR   +        +  PL DR  + IRL+ Y  ++   I +R
Sbjct: 708 L-------DVPVDLSRVLFVCTANMTDTIPRPLLDRMEV-IRLSGYVSDEKMAIAER 756


>gi|170578876|ref|XP_001894578.1| RuvB-like 1 [Brugia malayi]
 gi|158598745|gb|EDP36580.1| RuvB-like 1, putative [Brugia malayi]
          Length = 494

 Score = 43.1 bits (100), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 31/50 (62%)

Query: 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
          F GQ+EA     V ++  +++  A   +LF GPPG GKT +A  VA+ELG
Sbjct: 43 FIGQLEAREAAGVIVDLIRSKRMAGRAILFAGPPGTGKTAIALAVAQELG 92


>gi|153011781|ref|YP_001372994.1| ATP-dependent metalloprotease FtsH [Ochrobactrum anthropi ATCC
           49188]
 gi|151563669|gb|ABS17165.1| ATP-dependent metalloprotease FtsH [Ochrobactrum anthropi ATCC
           49188]
          Length = 610

 Score = 43.1 bits (100), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 45/91 (49%), Gaps = 8/91 (8%)

Query: 35  EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK-- 92
           E    LK   E  K  A     +L VGPPG GKT LA+ VA E GV F S SG    +  
Sbjct: 170 EVVEFLKNPAEYGKLGAHIPKGILLVGPPGTGKTLLARAVAGEAGVTFFSISGSEFVEMF 229

Query: 93  AGDLAALLTNLEDR------DVLFIDEIHRL 117
            G  AA + +L ++       ++FIDE+  L
Sbjct: 230 VGVGAARVRDLFEQARKSAPAIIFIDELDAL 260


>gi|18313875|ref|NP_560542.1| AAA family ATPase, CDC48 subfamily protein [Pyrobaculum aerophilum
           str. IM2]
 gi|18161441|gb|AAL64724.1| AAA family ATPase, possible cell division control protein cdc48
           [Pyrobaculum aerophilum str. IM2]
          Length = 738

 Score = 43.1 bits (100), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 53/118 (44%), Gaps = 17/118 (14%)

Query: 24  PRTLEEFTGQVE-ACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVV 74
           PR   E  G +E A   ++  +E      E   H        +L +GPPG GKT LA+ V
Sbjct: 172 PRVTWEDIGDLEDAKQKIRELVELPLRHPELFKHLGIEPPKGILLIGPPGTGKTLLAKAV 231

Query: 75  ARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DVLFIDEIHRLSIIVEEI 124
           A E    F + +GP I     G+  A L  + +        ++FIDEI  ++   EE+
Sbjct: 232 ANEANAYFVAINGPEIMSKYYGESEARLREIFEEAKKNAPAIIFIDEIDAIAPKREEV 289



 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 17/32 (53%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG+GKT  A+ VA E G NF +  GP
Sbjct: 502 ILLFGPPGVGKTLFAKAVATESGANFIAVRGP 533


>gi|50308075|ref|XP_454038.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|51701755|sp|Q6CPV1|PEX6_KLULA RecName: Full=Peroxisomal biogenesis factor 6; AltName:
           Full=Peroxin-6
 gi|49643173|emb|CAG99125.1| KLLA0E02003p [Kluyveromyces lactis]
          Length = 1000

 Score = 43.1 bits (100), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 17/32 (53%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +LF GPPG GKT LA+ +A    +NF S  GP
Sbjct: 738 ILFYGPPGTGKTLLAKAIASNFSLNFFSVKGP 769


>gi|332883563|gb|EGK03846.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Dysgonomonas
           mossii DSM 22836]
          Length = 411

 Score = 43.1 bits (100), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           +++ VGP G GKT LA+ +A+ L V F      V+ +AG    D+ ++LT L        
Sbjct: 110 NIIMVGPTGTGKTLLARTIAKLLHVPFAIVDATVLTEAGYVGEDIESILTRLLQASDYDV 169

Query: 104 --EDRDVLFIDEIHRLS 118
              +R ++FIDEI +++
Sbjct: 170 AAAERGIVFIDEIDKIA 186


>gi|124003731|ref|ZP_01688579.1| conserved hypothetical protein [Microscilla marina ATCC 23134]
 gi|123990786|gb|EAY30253.1| conserved hypothetical protein [Microscilla marina ATCC 23134]
          Length = 1696

 Score = 43.1 bits (100), Expect = 0.053,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 3/73 (4%)

Query: 50   RAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVL 109
            R + +  +L + PPG GKTTL + +A  LGV F   +GP I   G     L   E  +  
Sbjct: 1296 RTDLMGMLLLISPPGYGKTTLMEYIANRLGVIFMKINGPAI---GHQVTSLDPTEANNAS 1352

Query: 110  FIDEIHRLSIIVE 122
              +E+++L++  E
Sbjct: 1353 AREEVNKLNLAFE 1365


>gi|326571741|gb|EGE21754.1| recombination factor protein RarA [Moraxella catarrhalis BC8]
          Length = 412

 Score = 43.1 bits (100), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 63/138 (45%), Gaps = 9/138 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP TL+   GQ    S           R   L  ++  G  G+GKTTLA ++A  +G  
Sbjct: 8   MRPTTLDAVIGQTHLLSEGAPIFNIV--RQGFLPSLILHGSAGIGKTTLAMLLADAVGRP 65

Query: 82  FRSTSGPVIAKAGDLAALLTN----LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           F   S  V +   +L  +L +      +  V+F+DEIHR +   ++ L  A+E  ++ L+
Sbjct: 66  FHPLSA-VSSGVKELREVLRSDDGLFHEPPVVFVDEIHRFNKAQQDALLQAVETGEITLI 124

Query: 138 --VGEGPSARSVKINLSR 153
               E PS       LSR
Sbjct: 125 GATTENPSFSVNNALLSR 142


>gi|325968458|ref|YP_004244650.1| ATPase AAA [Vulcanisaeta moutnovskia 768-28]
 gi|323707661|gb|ADY01148.1| AAA family ATPase, CDC48 subfamily [Vulcanisaeta moutnovskia
           768-28]
          Length = 737

 Score = 43.1 bits (100), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 54/118 (45%), Gaps = 17/118 (14%)

Query: 24  PR-TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVV 74
           PR T E+     EA   ++  +E      E  ++        VL +GPPG GKT LA+ V
Sbjct: 180 PRITWEDIGDLKEAKEKIRELVELPLKHPEIFEYLGIEPPKGVLLIGPPGTGKTLLAKAV 239

Query: 75  ARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DVLFIDEIHRLSIIVEEI 124
           A E    F + +GP I     G+  A L  + +        ++FIDEI  ++   EE+
Sbjct: 240 ATETNAYFIAINGPEIVSKYYGESEAKLREIFEEAKKNAPAIIFIDEIDAIAPKREEV 297



 Score = 39.7 bits (91), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT LA+ VA E   NF +  GP I
Sbjct: 498 ILLFGPPGTGKTLLAKAVATESNANFIAVRGPEI 531


>gi|169343442|ref|ZP_02864442.1| ATP-dependent protease [Clostridium perfringens C str. JGS1495]
 gi|169298394|gb|EDS80483.1| ATP-dependent protease [Clostridium perfringens C str. JGS1495]
          Length = 632

 Score = 43.1 bits (100), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 6/67 (8%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +SLLRP + +E  GQ  A  +L      +K  +    H++  GPPG+GKTT A+ +A E 
Sbjct: 163 MSLLRPDSFDEVVGQERAVKSL-----LSKLASPYPQHIILYGPPGVGKTTAAR-IALET 216

Query: 79  GVNFRST 85
               +ST
Sbjct: 217 AKKLKST 223


>gi|332375729|gb|AEE63005.1| unknown [Dendroctonus ponderosae]
          Length = 721

 Score = 43.1 bits (100), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 42/80 (52%), Gaps = 9/80 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F   +GP      V   A  +  L    ++R   V
Sbjct: 322 VLLVGPPGTGKTLLARAVAGEAGVPFFHAAGPEFDEVLVGQGARRVRDLFKAAKERAPCV 381

Query: 109 LFIDEIHRL-SIIVEEILYP 127
           +FIDEI  + S     +L+P
Sbjct: 382 VFIDEIDSIGSKRTNSVLHP 401


>gi|328542273|ref|YP_004302382.1| ATP-dependent metalloprotease FtsH [polymorphum gilvum SL003B-26A1]
 gi|326412022|gb|ADZ69085.1| ATP-dependent metalloprotease FtsH [Polymorphum gilvum SL003B-26A1]
          Length = 610

 Score = 43.1 bits (100), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 45/91 (49%), Gaps = 8/91 (8%)

Query: 35  EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK-- 92
           E    LK   E  K  A     +L VGPPG GKT LA+ VA E GV F S SG    +  
Sbjct: 170 EVVEFLKNPAEYGKLGAHIPKGILLVGPPGTGKTLLARAVAGEAGVTFFSISGSEFVEMF 229

Query: 93  AGDLAALLTNLEDR------DVLFIDEIHRL 117
            G  AA + +L ++       ++FIDE+  L
Sbjct: 230 VGVGAARVRDLFEQARKSAPAIIFIDELDAL 260


>gi|317036017|ref|XP_001397471.2| replication factor C subunit 3 [Aspergillus niger CBS 513.88]
          Length = 396

 Score = 43.1 bits (100), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 5/56 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           RP TLE+ +G  +  + +  F+EA +     L H+L  GPPG GKT+    +AR +
Sbjct: 51  RPNTLEDVSGHQDILATINKFVEANR-----LPHLLLYGPPGTGKTSTILALARRI 101


>gi|307265667|ref|ZP_07547220.1| Vesicle-fusing ATPase [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919311|gb|EFN49532.1| Vesicle-fusing ATPase [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 493

 Score = 43.1 bits (100), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 29/137 (21%)

Query: 1   MMDREGLL--SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIE-------AAKARA 51
           +M+ +GL+  S+N+ + +++IS       E+  GQ  A S LK  ++        +K   
Sbjct: 40  IMENKGLIPGSKNIIKPESEISF------EDIGGQNTAISELKEALDFVINREKISKMGI 93

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL------ 103
             +  +L  GPPG GKT LA+  A+    +F +TSG    +  AG  A  + NL      
Sbjct: 94  RPIKGILLTGPPGTGKTLLAKAAAKYTNSSFIATSGSEFIEMYAGVGAQRVRNLFETAKN 153

Query: 104 ------EDRDVLFIDEI 114
                 ++  ++FIDEI
Sbjct: 154 LARKEGKNSAIIFIDEI 170


>gi|292669341|ref|ZP_06602767.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
 gi|292648976|gb|EFF66948.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
          Length = 700

 Score = 43.1 bits (100), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 5/64 (7%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           N+    + + LLRP+  +E  GQ  A  +L      AK  +    H+L  GPPG+GKTT 
Sbjct: 163 NIHLTQSVMELLRPQNFDEIVGQERAVRSL-----MAKLSSPYPQHLLLYGPPGVGKTTA 217

Query: 71  AQVV 74
           A++V
Sbjct: 218 ARLV 221


>gi|284176150|ref|YP_003406427.1| Adenosinetriphosphatase [Haloterrigena turkmenica DSM 5511]
 gi|284017807|gb|ADB63754.1| Adenosinetriphosphatase [Haloterrigena turkmenica DSM 5511]
          Length = 739

 Score = 43.1 bits (100), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 23/34 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL  GPPG GKT +A+ VA E+  NF + SGP I
Sbjct: 254 VLLYGPPGTGKTLIARAVANEVDANFETVSGPEI 287



 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL  GPPG GKT LA+ +A E  VNF    GP I
Sbjct: 521 VLLHGPPGTGKTLLARALAGETDVNFVRVDGPEI 554


>gi|229815425|ref|ZP_04445757.1| hypothetical protein COLINT_02473 [Collinsella intestinalis DSM
           13280]
 gi|229808958|gb|EEP44728.1| hypothetical protein COLINT_02473 [Collinsella intestinalis DSM
           13280]
          Length = 635

 Score = 43.1 bits (100), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 52/105 (49%), Gaps = 17/105 (16%)

Query: 26  TLEEFTGQVEACSNLKV---FIEAAKARAEALDH-----VLFVGPPGLGKTTLAQVVARE 77
           T ++  GQ EA  +LK    F+E  + R E +        L VGPPG GKT LA+ VA E
Sbjct: 183 TFKDVAGQEEAKESLKEVVDFLENPQ-RYEEIGAKLPRGALLVGPPGTGKTLLAKAVAGE 241

Query: 78  LGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--VLFIDEI 114
            GV F S SG    +      A  +  L    +++   ++FIDEI
Sbjct: 242 AGVPFFSISGSEFVEMFVGRGAAKVRDLFKQAKEKAPCIVFIDEI 286


>gi|24216518|ref|NP_713999.1| ATP-dependent Zn protease [Leptospira interrogans serovar Lai str.
           56601]
 gi|45656331|ref|YP_000417.1| cell division protein [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
 gi|24197827|gb|AAN51017.1| ATP-dependent Zn protease [Leptospira interrogans serovar Lai str.
           56601]
 gi|45599565|gb|AAS69054.1| cell division protein [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
          Length = 655

 Score = 43.1 bits (100), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 38/66 (57%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL VGPPG GKT LA+ VA E GV F S SG    +   G  A+ + +L D+       +
Sbjct: 216 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFDQGKKNSPCI 275

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 276 IFIDEI 281


>gi|18311617|ref|NP_563551.1| ATP-dependent proteinase La [Clostridium perfringens str. 13]
 gi|110800560|ref|YP_697325.1| ATP-dependent protease [Clostridium perfringens ATCC 13124]
 gi|110803724|ref|YP_699884.1| ATP-dependent protease [Clostridium perfringens SM101]
 gi|18146301|dbj|BAB82341.1| probable ATP-dependent proteinase La [Clostridium perfringens str.
           13]
 gi|110675207|gb|ABG84194.1| ATP-dependent protease [Clostridium perfringens ATCC 13124]
 gi|110684225|gb|ABG87595.1| ATP-dependent protease [Clostridium perfringens SM101]
          Length = 619

 Score = 43.1 bits (100), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 6/67 (8%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +SLLRP + +E  GQ  A  +L      +K  +    H++  GPPG+GKTT A+ +A E 
Sbjct: 150 MSLLRPDSFDEVVGQERAVKSL-----LSKLASPYPQHIILYGPPGVGKTTAAR-IALET 203

Query: 79  GVNFRST 85
               +ST
Sbjct: 204 AKKLKST 210


>gi|332978061|gb|EGK14799.1| ATP-dependent protease LonB [Desmospora sp. 8437]
          Length = 561

 Score = 43.1 bits (100), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 38/81 (46%), Gaps = 9/81 (11%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           R+VS  +      RP + +E  GQ E    LK  +     +     H+L  GPPG+GKT 
Sbjct: 51  RSVSLTEPLSEKTRPSSFDEIVGQKEGLRALKAALCGPNPQ-----HILIYGPPGVGKTA 105

Query: 70  LAQVVARELGVN----FRSTS 86
            A+VV  E   N    F STS
Sbjct: 106 AARVVLEEAKKNPQSPFNSTS 126


>gi|300122194|emb|CBK22768.2| unnamed protein product [Blastocystis hominis]
          Length = 352

 Score = 43.1 bits (100), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 74/173 (42%), Gaps = 21/173 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHR 116
           VL  GPPG  KT LA+ VA E  +NF S  GP      +L +      ++ V  +    R
Sbjct: 128 VLLYGPPGCSKTLLAKAVATEANMNFISVKGP------ELYSKYVGESEQAVAAVFRKAR 181

Query: 117 LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS---------RFTLIAATTRVGLLT 167
           LS     I +  ++ F +D     G + R V   L+         R  +IAAT R  LL 
Sbjct: 182 LSSPC-VIFFDEIDAFAVDSRGSSGVTERVVSQFLTELDGIHALKRVLVIAATNRPDLLD 240

Query: 168 NPL--QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEA-ACEIAMRSRG 217
             L    R    I L   ++E  + I++    L  +   D+  A EIA R+ G
Sbjct: 241 PALLRPGRLDTHIFLGLPDVEARRKILE--VHLEKVPCDDDVDAQEIAERTEG 291


>gi|317154523|ref|YP_004122571.1| ATP-dependent protease La [Desulfovibrio aespoeensis Aspo-2]
 gi|316944774|gb|ADU63825.1| ATP-dependent protease La [Desulfovibrio aespoeensis Aspo-2]
          Length = 841

 Score = 43.1 bits (100), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 53/224 (23%), Positives = 88/224 (39%), Gaps = 59/224 (26%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAKAGDLAALLT 101
           + F GPPG+GKT+L + +AR LG  F   S                 + A  G +   + 
Sbjct: 420 LCFSGPPGVGKTSLGRSIARSLGRKFHRMSLGGMRDEAEIRGHRRTYIGAMPGRIIQAIK 479

Query: 102 NLEDRD-VLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152
               R+ V+ +DEI +L        S  + E+L P       D  +       +V  +LS
Sbjct: 480 QCGTRNPVIMLDEIDKLGSDFRGDPSSALLEVLDPEQNFSFTDHYL-------NVPFDLS 532

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR----------GAKLTGLA 202
           +   I     +  +  PL+DR  I IR+  Y  ++   I +R          G K + LA
Sbjct: 533 KVMFICTANMLDSIPGPLRDRMEI-IRIPGYTEQEKTAITRRYIIPRQIRENGLKESELA 591

Query: 203 VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           ++D+   ++                 VR++   A  + + REI 
Sbjct: 592 ISDKLVAKV-----------------VREYTREAGLRNVEREIG 618


>gi|297743224|emb|CBI36091.3| unnamed protein product [Vitis vinifera]
          Length = 904

 Score = 43.1 bits (100), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDR--DV 108
           +L  GPPG+GKT LA+ VA E GVNF S S     +      A  + AL    ++    V
Sbjct: 474 ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRALYQEAKENAPSV 533

Query: 109 LFIDEI 114
           +FIDE+
Sbjct: 534 VFIDEL 539


>gi|91775763|ref|YP_545519.1| ATP-dependent protease ATP-binding subunit [Methylobacillus
           flagellatus KT]
 gi|122985527|sp|Q1H1F9|CLPX_METFK RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|91709750|gb|ABE49678.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Methylobacillus flagellatus KT]
          Length = 421

 Score = 43.1 bits (100), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 49/111 (44%), Gaps = 24/111 (21%)

Query: 32  GQVEACSNLKVFIEAAKARAE----------ALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           GQ +A  NL V +     R E          A  ++L +GP G GKT LAQ +AR L V 
Sbjct: 79  GQTQAKKNLAVAVYNHYKRLEQGGQKDDVEIAKSNILVIGPTGSGKTLLAQTLARLLDVP 138

Query: 82  FRSTSGPVIAKAGDLAALLTNL--------------EDRDVLFIDEIHRLS 118
           F       + +AG +   + N+                R +++IDEI ++S
Sbjct: 139 FVMADATTLTEAGYVGEDVENIMQKLLQKCDYDVEKAQRGIVYIDEIDKIS 189


>gi|41615258|ref|NP_963756.1| hypothetical protein NEQ475 [Nanoarchaeum equitans Kin4-M]
 gi|40068982|gb|AAR39317.1| NEQ475 [Nanoarchaeum equitans Kin4-M]
          Length = 826

 Score = 43.1 bits (100), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           VL  GPPG GKT LA+ VA E G  F S +GP I     G+  A L  + +        +
Sbjct: 228 VLLYGPPGTGKTLLAKAVANESGAYFISINGPEIVSKYVGESEAKLREIFEEAQKNAPAI 287

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 288 IFIDEIDAIA 297



 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL  GPPG GKT LA+  A E G NF +  GP I
Sbjct: 522 VLLYGPPGTGKTLLAKAAASESGANFIAVKGPEI 555


>gi|326389230|ref|ZP_08210798.1| Vesicle-fusing ATPase [Thermoanaerobacter ethanolicus JW 200]
 gi|325994593|gb|EGD53017.1| Vesicle-fusing ATPase [Thermoanaerobacter ethanolicus JW 200]
          Length = 493

 Score = 43.1 bits (100), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 29/137 (21%)

Query: 1   MMDREGLL--SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIE-------AAKARA 51
           +M+ +GL+  S+N+ + +++IS       E+  GQ  A S LK  ++        +K   
Sbjct: 40  IMENKGLIPGSKNIIKPESEISF------EDIGGQNTAISELKEALDFVINREKISKMGI 93

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL------ 103
             +  +L  GPPG GKT LA+  A+    +F +TSG    +  AG  A  + NL      
Sbjct: 94  RPIKGILLTGPPGTGKTLLAKAAAKYTNSSFIATSGSEFIEMYAGVGAQRVRNLFETAKN 153

Query: 104 ------EDRDVLFIDEI 114
                 ++  ++FIDEI
Sbjct: 154 LARKEGKNSAIIFIDEI 170


>gi|299141873|ref|ZP_07035008.1| cell division protein FtsH [Prevotella oris C735]
 gi|298576724|gb|EFI48595.1| cell division protein FtsH [Prevotella oris C735]
          Length = 681

 Score = 43.1 bits (100), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 36/65 (55%), Gaps = 8/65 (12%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VL 109
           L VGPPG GKT LA+ VA E GV F S SG       V   A  +  + +  +D+   ++
Sbjct: 240 LLVGPPGTGKTLLAKAVAGEAGVPFFSMSGSDFVEMFVGVGASRVRDVFSQAKDKSPCII 299

Query: 110 FIDEI 114
           FIDEI
Sbjct: 300 FIDEI 304


>gi|224541457|ref|ZP_03681996.1| hypothetical protein CATMIT_00626 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525615|gb|EEF94720.1| hypothetical protein CATMIT_00626 [Catenibacterium mitsuokai DSM
           15897]
          Length = 652

 Score = 43.1 bits (100), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 45/95 (47%), Gaps = 11/95 (11%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           EE T  V    N K F E     A+    VL VGPPG GKT LA+ VA E  V F S SG
Sbjct: 181 EELTELVAFLKNPKKFTEMG---AKIPRGVLLVGPPGTGKTLLARAVAGEANVPFYSISG 237

Query: 88  P------VIAKAGDLAALLTNLEDRD--VLFIDEI 114
                  V   AG +  +    ++    ++FIDEI
Sbjct: 238 SEFVEMFVGVGAGRVRDMFKKAKENAPCIIFIDEI 272


>gi|168211579|ref|ZP_02637204.1| ATP-dependent protease [Clostridium perfringens B str. ATCC 3626]
 gi|168214821|ref|ZP_02640446.1| ATP-dependent protease [Clostridium perfringens CPE str. F4969]
 gi|168218029|ref|ZP_02643654.1| ATP-dependent protease [Clostridium perfringens NCTC 8239]
 gi|182626424|ref|ZP_02954177.1| ATP-dependent protease [Clostridium perfringens D str. JGS1721]
 gi|170710443|gb|EDT22625.1| ATP-dependent protease [Clostridium perfringens B str. ATCC 3626]
 gi|170713714|gb|EDT25896.1| ATP-dependent protease [Clostridium perfringens CPE str. F4969]
 gi|177908298|gb|EDT70851.1| ATP-dependent protease [Clostridium perfringens D str. JGS1721]
 gi|182379942|gb|EDT77421.1| ATP-dependent protease [Clostridium perfringens NCTC 8239]
          Length = 632

 Score = 43.1 bits (100), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 6/67 (8%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +SLLRP + +E  GQ  A  +L      +K  +    H++  GPPG+GKTT A+ +A E 
Sbjct: 163 MSLLRPDSFDEVVGQERAVKSL-----LSKLASPYPQHIILYGPPGVGKTTAAR-IALET 216

Query: 79  GVNFRST 85
               +ST
Sbjct: 217 AKKLKST 223


>gi|116332057|ref|YP_801775.1| ATP-dependent Zn protease [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|122280211|sp|Q04Q03|FTSH_LEPBJ RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|116125746|gb|ABJ77017.1| ATP-dependent Zn protease [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 652

 Score = 43.1 bits (100), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 38/66 (57%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL VGPPG GKT LA+ VA E GV F S SG    +   G  A+ + +L D+       +
Sbjct: 216 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFDQGKKNSPCI 275

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 276 IFIDEI 281


>gi|78043822|ref|YP_358912.1| putative ATP-dependent protease La [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77995937|gb|ABB14836.1| putative ATP-dependent protease La [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 632

 Score = 43.1 bits (100), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 5/59 (8%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +S LRPR+  E  GQ  A   L      AK  +    H+L  GPPG+GKTT A++   E
Sbjct: 156 MSFLRPRSFSEIVGQERAIRAL-----LAKLSSPFPQHILLYGPPGVGKTTAARLCLEE 209


>gi|148264882|ref|YP_001231588.1| AAA family ATPase, CDC48 subfamily protein [Geobacter
           uraniireducens Rf4]
 gi|146398382|gb|ABQ27015.1| AAA family ATPase, CDC48 subfamily [Geobacter uraniireducens Rf4]
          Length = 701

 Score = 43.1 bits (100), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 8/76 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DV 108
           +L  GPPG GKT +A+ VA E   +F S SGP I     G+  A L NL +        +
Sbjct: 212 LLLHGPPGTGKTLIARAVANETNASFYSVSGPEIIHKFYGESEAKLRNLFEEARKNAPSI 271

Query: 109 LFIDEIHRLSIIVEEI 124
           +F+DEI  ++   E++
Sbjct: 272 IFLDEIDAIAPKREQV 287



 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 25/42 (59%)

Query: 49  ARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           A+ +    +L  GPPG GKT LA+ +A E  VNF S  GP +
Sbjct: 477 AKVKPPKGILLYGPPGTGKTLLAKALATESKVNFISIKGPAL 518


>gi|299138849|ref|ZP_07032026.1| ATPase associated with various cellular activities AAA_3
           [Acidobacterium sp. MP5ACTX8]
 gi|298599003|gb|EFI55164.1| ATPase associated with various cellular activities AAA_3
           [Acidobacterium sp. MP5ACTX8]
          Length = 322

 Score = 43.1 bits (100), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 76/169 (44%), Gaps = 27/169 (15%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSG-PVIAKAGDLAALLTNLEDRD------- 107
           H L  G PG+ KT   + +AR LG+ FR   G P +  A  L   + + +  D       
Sbjct: 45  HALIEGVPGVAKTLAVKTLARFLGLEFRRVQGTPDMMPADILGTNVFSPKTGDFGFHKGP 104

Query: 108 ----VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSR-FTLIAATTR 162
                L  DEI+R+    +  L  +ME+ Q+        +A   +  L   FT+ A    
Sbjct: 105 VFTQFLLTDEINRMPPRTQAALLESMEERQV--------TADGERHQLDECFTVFATQNP 156

Query: 163 VGLL-TNPLQ----DRFGIPIRLNFYEIEDLKTIVQR-GAKLTGLAVTD 205
           V    T PL     DRF + I++ + E+ D +T+++R  A  TG  ++D
Sbjct: 157 VEFEGTYPLPEAQLDRFLLKIKVEYPELADERTVLERHHAAHTGTGLSD 205


>gi|295695316|ref|YP_003588554.1| ATP-dependent protease La [Bacillus tusciae DSM 2912]
 gi|295410918|gb|ADG05410.1| ATP-dependent protease La [Bacillus tusciae DSM 2912]
          Length = 781

 Score = 43.1 bits (100), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 87/223 (39%), Gaps = 57/223 (25%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           + FVGPPG+GKT+LA+ VAR LG  F R + G V  +A              G +   + 
Sbjct: 349 LCFVGPPGVGKTSLARSVARALGRRFVRVSLGGVRDEAEIRGHRRTYVGALPGRIIQGMK 408

Query: 102 NLEDRDVLF-IDEIHRLS--------IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152
              + D +F +DEI ++S          + E+L P       D  +        V  +LS
Sbjct: 409 QAGEMDPVFLLDEIDKMSHDFRGDPASALLEVLDPEQNHTFSDHYI-------EVPYDLS 461

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL---------KTIVQRGAKLTGLAV 203
           R   I        +  PL DR  +     + E+E L         K +   G     L++
Sbjct: 462 RVLFITTANVAYTIPQPLLDRMEVIHLPGYTEVEKLRIAKGYLVPKQLEAHGLTRDQLSI 521

Query: 204 TDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +DE                  LL+ +R +   A  + + REIA
Sbjct: 522 SDET-----------------LLKIIRSYTREAGVRNLEREIA 547


>gi|238926662|ref|ZP_04658422.1| ATP-dependent protease [Selenomonas flueggei ATCC 43531]
 gi|238885608|gb|EEQ49246.1| ATP-dependent protease [Selenomonas flueggei ATCC 43531]
          Length = 713

 Score = 43.1 bits (100), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 5/56 (8%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           + LLRP+  +E  GQ  A  +L      AK  +    H+L  GPPG+GKTT A++V
Sbjct: 170 MELLRPKKFDEIVGQERAVRSL-----MAKLSSPYPQHLLLYGPPGVGKTTAARLV 220


>gi|237741245|ref|ZP_04571726.1| DNA polymerase III subunit gamma/tau [Fusobacterium sp. 4_1_13]
 gi|229430777|gb|EEO40989.1| DNA polymerase III subunit gamma/tau [Fusobacterium sp. 4_1_13]
          Length = 484

 Score = 43.1 bits (100), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 107/246 (43%), Gaps = 31/246 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP +  E +G+ E   +LK+ ++  K+ A A    LF GP G+GKTT+A+++A+ L    
Sbjct: 10  RPSSFSEVSGENEIVKSLKLSLKN-KSMAHAY---LFSGPRGVGKTTIARLIAKGLNCLN 65

Query: 83  RSTSGPVIAKAGDLAAL-------LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
              +G    +  +  A+       L  ++      IDEI  L    E+I Y  +E  +  
Sbjct: 66  LKENGEPCNECKNCKAINEGRFSDLIEIDAASNRSIDEIRSLK---EKINYQPVEGLKKV 122

Query: 136 LMVGEGPSARSVKINL---------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNF--YE 184
            ++ E         N          +    I ATT +  +   +  R     R +F   +
Sbjct: 123 YIIDEAHMLTKEAFNALLKTLEEPPAHVMFILATTELEKILPTIISRCQ---RYDFKPLD 179

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +E++K  ++   K   L++TD+    I   S G+ R +  +L R+      A+ K I  +
Sbjct: 180 LEEMKAGLEHILKEENLSMTDDVYSVIYENSSGSMRDSISILERL---MVTANGKEIDLK 236

Query: 245 IADAAL 250
           IA+  L
Sbjct: 237 IAEDTL 242


>gi|124361201|gb|ABN09173.1| AAA ATPase, central region [Medicago truncatula]
          Length = 511

 Score = 43.1 bits (100), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 8/71 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLAALLTNLEDR------DV 108
           VL  GPPG  KT +A+ VA E G+NF +  GP +     G+    + +L D+       +
Sbjct: 282 VLMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFDKARANAPAI 341

Query: 109 LFIDEIHRLSI 119
           +F DEI  L+I
Sbjct: 342 IFFDEIDSLAI 352


>gi|115973629|ref|XP_001195031.1| PREDICTED: similar to replication factor C subunit RFC5
          [Strongylocentrotus purpuratus]
          Length = 292

 Score = 43.1 bits (100), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP +L++     E  + ++ FI     + + L H+LF GPPG GKT+    VA++L
Sbjct: 8  RPNSLDDLISHTEIINTIQKFI-----KQDRLPHLLFYGPPGTGKTSTILAVAKQL 58


>gi|20093359|ref|NP_619434.1| cell division control protein 48 [Methanosarcina acetivorans C2A]
 gi|19918724|gb|AAM07914.1| cell division control protein 48 [Methanosarcina acetivorans C2A]
          Length = 753

 Score = 43.1 bits (100), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DV 108
           VL  GPPG GKT +A+ VA E   NF + SGP I     G+    L  + D        +
Sbjct: 213 VLLHGPPGTGKTMIAKAVASETDANFITISGPEIVSKYYGESEQKLREIFDEAEKDAPSI 272

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 273 IFIDEIDSIA 282



 Score = 39.7 bits (91), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 485 VLLFGPPGTGKTLLAKAVASESEANFISIKGP 516


>gi|21227923|ref|NP_633845.1| replication factor C small subunit [Methanosarcina mazei Go1]
 gi|42559488|sp|Q8PVY4|RFCS_METMA RecName: Full=Replication factor C small subunit; Short=RFC small
          subunit; AltName: Full=Clamp loader small subunit
 gi|20906344|gb|AAM31517.1| replication factor C subunit [Methanosarcina mazei Go1]
          Length = 338

 Score = 43.1 bits (100), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 5/65 (7%)

Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
          +E+  I   RP  L +  GQ E    L  ++         L H+LF GPPG+GKT  A  
Sbjct: 11 KEEIWIEKYRPVRLNQVAGQEETIERLMSYVATKN-----LPHLLFSGPPGVGKTASAVS 65

Query: 74 VAREL 78
          +ARE+
Sbjct: 66 IAREI 70


>gi|51701840|sp|Q9C1E9|PEX6_GLOLA RecName: Full=Peroxisomal biogenesis factor 6; AltName: Full=ClaPEX6;
            AltName: Full=Peroxin-6
 gi|13249305|gb|AAK16738.1|AF343063_1 Pex6 protein [Colletotrichum lagenarium]
          Length = 1388

 Score = 43.1 bits (100), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%)

Query: 41   KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
            ++F +  K R+     +LF GPPG GKT LA+ +A E  +NF S  GP
Sbjct: 1018 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEYSLNFFSVKGP 1061


>gi|296412774|ref|XP_002836095.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295629900|emb|CAZ80252.1| unnamed protein product [Tuber melanosporum]
          Length = 648

 Score = 43.1 bits (100), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL--EDRD----V 108
           VLF GPPG GKT LA ++A E+G  F + S P I    +G+    L  L  E R+    +
Sbjct: 129 VLFHGPPGCGKTMLANIIAEEVGRPFIAISAPSIVSGMSGESEKRLRELFEEAREKAPCL 188

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 189 MFIDEI 194



 Score = 39.3 bits (90), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 385 VLLWGPPGCGKTLLAKAVANESRANFISIQGP 416


>gi|302414422|ref|XP_003005043.1| replication factor C subunit 2 [Verticillium albo-atrum VaMs.102]
 gi|261356112|gb|EEY18540.1| replication factor C subunit 2 [Verticillium albo-atrum VaMs.102]
          Length = 126

 Score = 43.1 bits (100), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 5/60 (8%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          +   RP+TL + T Q    + L+  ++A+      L H+LF GPPG GKT+    +A+EL
Sbjct: 37 VEKYRPKTLSDVTAQDHTVTILQRTLQASN-----LPHMLFYGPPGTGKTSTVLALAKEL 91


>gi|255658241|ref|ZP_05403650.1| ATP-dependent protease La [Mitsuokella multacida DSM 20544]
 gi|260849551|gb|EEX69558.1| ATP-dependent protease La [Mitsuokella multacida DSM 20544]
          Length = 841

 Score = 43.1 bits (100), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 76/177 (42%), Gaps = 35/177 (19%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           +  VGPPG+GKT+LA  +AR  G  F R+  G V  +A              G +   + 
Sbjct: 369 LCLVGPPGVGKTSLAASIARATGRKFIRAALGGVRDEAEIRGHRRTYLGAMPGRIIEGIR 428

Query: 102 NLEDRDVLF-IDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152
           N+  R+ +F +DE+ +L        S  + E+L PA      D  +        +  +LS
Sbjct: 429 NVGTRNPVFLLDEVDKLVTDYRGDPSAALLEVLDPAQNKTFSDNYI-------DIPFDLS 481

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL----KTIVQRGAKLTGLAVTD 205
           +   I     +G +  PL+DR  I    ++ E E L    + +V R     GLA  D
Sbjct: 482 KVFWIVTANSLGPIPRPLRDRMEIIELSSYTEYEKLEIAKRYLVARQRGQNGLAGKD 538


>gi|56961888|ref|YP_173610.1| cell-division protein FtsH [Bacillus clausii KSM-K16]
 gi|56908122|dbj|BAD62649.1| cell-division protein FtsH [Bacillus clausii KSM-K16]
          Length = 662

 Score = 43.1 bits (100), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNSPCI 260

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 261 IFIDEI 266


>gi|320581534|gb|EFW95754.1| peroxisomal Lon protease [Pichia angusta DL-1]
          Length = 935

 Score = 43.1 bits (100), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 95/228 (41%), Gaps = 47/228 (20%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA----------------ALL 100
           +L  GPPG+GKT+LA+ +A  LG  F+  S   +    DL                 AL 
Sbjct: 448 LLLTGPPGVGKTSLARSIASTLGRKFQRISVGGLNDFADLKGHRRTYVGAIPGLIVQALR 507

Query: 101 TNLEDRDVLFIDEIHRL---------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINL 151
            +     V+ +DE+ ++            + EIL P       D  +G         I+L
Sbjct: 508 RSQSMNPVILLDEVDKIGSNSRKGDPEAALLEILDPEQNTNFHDHYIG-------FPIDL 560

Query: 152 SRFTLIAATTRVGLLTNPLQDRFGIPIRL---NFYEIEDL--KTIVQRGAKLTGL----- 201
           S+   +  +  +  L++PL+DR  + I L   N+ E  ++  K I+ R  +  GL     
Sbjct: 561 SQILFVCTSNDLWQLSDPLRDRMEV-IELAGYNYMEKVEICKKYIIPRQLERAGLASDAV 619

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
           A+ DE   ++A      P I  R L R+   A +   K +  ++ +A 
Sbjct: 620 AMDDETILKMATHYTSEPGI--RNLERL--IAAICRGKAVETQMGEAT 663


>gi|294507044|ref|YP_003571102.1| Cell division protein FtsH [Salinibacter ruber M8]
 gi|310943088|sp|D5H7Z5|FTSH1_SALRM RecName: Full=ATP-dependent zinc metalloprotease FtsH 1
 gi|294343372|emb|CBH24150.1| Cell division protein FtsH [Salinibacter ruber M8]
          Length = 686

 Score = 43.1 bits (100), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F S SG       V   A  +  L    ++R   +
Sbjct: 253 VLLVGPPGTGKTLLAKAVAGEAGVPFASISGSDFMEMFVGVGASRVRDLFDQAKERAPCI 312

Query: 109 LFIDEI 114
           +FIDE+
Sbjct: 313 IFIDEV 318


>gi|291571747|dbj|BAI94019.1| cell division protein FtsH [Arthrospira platensis NIES-39]
          Length = 628

 Score = 43.1 bits (100), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F S SG       V   A  +  L    +D    +
Sbjct: 204 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKDNSPCL 263

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 264 IFIDEI 269


>gi|218185465|gb|EEC67892.1| hypothetical protein OsI_35562 [Oryza sativa Indica Group]
          Length = 990

 Score = 43.1 bits (100), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 58/119 (48%), Gaps = 17/119 (14%)

Query: 18  DISLLRPRT-LEEFTGQVEACSNLKVFIEAAKARAEALDHV--------LFVGPPGLGKT 68
           ++SL  P+   E+  GQV     L   IE  +   +A +++        L +GPPG  KT
Sbjct: 710 EVSLELPKIRWEDVGGQVRIKEQLIEAIELPQKNPKAFENMGVSPPRGLLMIGPPGCSKT 769

Query: 69  TLAQVVARELGVNFRSTSGPVI--AKAGDLAALLTNL--EDRD----VLFIDEIHRLSI 119
            +A+ VA E  +NF +  GP +     GD    + +L  + RD    +LF DEI  L++
Sbjct: 770 LMARAVASEAKLNFLAVKGPELFSKWVGDSEKAVRSLFAKARDNAPAILFFDEIDGLAV 828



 Score = 38.1 bits (87), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT+LA   A + GVN  + +GP I
Sbjct: 441 ILLSGPPGTGKTSLATSCAYDEGVNLFTINGPEI 474


>gi|113200663|ref|YP_717826.1| sliding clamp loader [Synechococcus phage syn9]
 gi|76574562|gb|ABA47127.1| sliding clamp loader [Synechococcus phage syn9]
          Length = 313

 Score = 43.1 bits (100), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 15/121 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T+E+             F+E  +     + ++L  G  G+GKTT+A+ +  ELG ++
Sbjct: 11  RPQTVEDCILPANVKETFTSFVEQGE-----IPNLLLSGTAGVGKTTIAKALCNELGADY 65

Query: 83  RSTSGP--------VIAKAGDLAAL--LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
              +G         V  +A + A+   LT+     VL IDE    +  V+ +L  ++E+F
Sbjct: 66  YVINGSDEGRFLDTVRNQAKNFASTVSLTSTSKHKVLIIDEADNTTPDVQLLLRASIEEF 125

Query: 133 Q 133
           Q
Sbjct: 126 Q 126


>gi|19112584|ref|NP_595792.1| AAA family ATPase Rix7 (predicted) [Schizosaccharomyces pombe
           972h-]
 gi|74582013|sp|O14325|YB7A_SCHPO RecName: Full=Uncharacterized AAA domain-containing protein
           C16E9.10c
 gi|2467272|emb|CAB16902.1| AAA family ATPase Rix7 (predicted) [Schizosaccharomyces pombe]
          Length = 779

 Score = 43.1 bits (100), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 21/34 (61%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL  GPPG GKT LA  +A ELGV F S S P I
Sbjct: 211 VLLHGPPGCGKTMLANALANELGVPFISISAPSI 244



 Score = 40.4 bits (93), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 529 VLLWGPPGCGKTLLAKAVANESKANFISIRGP 560


>gi|330836760|ref|YP_004411401.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Spirochaeta
           coccoides DSM 17374]
 gi|329748663|gb|AEC02019.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Spirochaeta
           coccoides DSM 17374]
          Length = 410

 Score = 43.1 bits (100), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 62/141 (43%), Gaps = 31/141 (21%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD--------LAALLTNLED-- 105
           ++L +GP G GKT LA+ +AR+L V F       + +AG         L  L+ N  D  
Sbjct: 110 NILMIGPTGTGKTLLARTLARKLKVPFAIADATTLTEAGYVGEDVENILLKLIQNANDNI 169

Query: 106 ----RDVLFIDEIHRL-------SII-------VEEILYPAMEDFQLDLMVGEG---PSA 144
               R ++FIDEI ++       SI        V++ L   +E  + ++    G   P+ 
Sbjct: 170 AEAERGIIFIDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTEANVPPQGGRKHPNQ 229

Query: 145 RSVKINLSRFTLIAATTRVGL 165
             +KIN S    I     VGL
Sbjct: 230 EMIKINTSNILFICGGAFVGL 250


>gi|313123085|ref|YP_004033344.1| m41 family endopeptidase ftsh [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312279648|gb|ADQ60367.1| M41 family endopeptidase FtsH [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 657

 Score = 43.1 bits (100), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108
           VL  GPPG GKT LA+ VA E GV F S SG       V   A  +  L TN +     +
Sbjct: 178 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFTNAKKNAPSI 237

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 238 IFIDEI 243


>gi|300172666|ref|YP_003771831.1| DNA polymerase III subunit gamma/tau [Leuconostoc gasicomitatum LMG
           18811]
 gi|299887044|emb|CBL91012.1| DNA polymerase III subunit gamma/tau [Leuconostoc gasicomitatum LMG
           18811]
          Length = 585

 Score = 43.1 bits (100), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 29/119 (24%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELG 79
           + RPRT ++  GQ      L+  IE  +       H  LF GP G GKT+ A++ ARE+ 
Sbjct: 9   VYRPRTFDDMVGQEVITQTLRNAIETHQT-----GHAYLFSGPRGTGKTSAAKIFAREIN 63

Query: 80  --------------VNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLS 118
                         V F + S    ++  D+  +L+N++      +  V  IDE+H LS
Sbjct: 64  GIDPTTDDSQIPDIVEFDAASN---SRVEDMRDILSNVDYAPIEAEFKVYIIDEVHMLS 119


>gi|296241870|ref|YP_003649357.1| replication factor C large subunit [Thermosphaera aggregans DSM
           11486]
 gi|296094454|gb|ADG90405.1| replication factor C large subunit [Thermosphaera aggregans DSM
           11486]
          Length = 430

 Score = 43.1 bits (100), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 88/216 (40%), Gaps = 42/216 (19%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV-- 80
           RPRT+E+   Q +A +    ++E    +      VL  GP G GKT+L + VAR  G   
Sbjct: 12  RPRTIEDVVNQEDAKNAFLNWLENW-GKPGQKKAVLLHGPAGCGKTSLVEAVARSKGYQL 70

Query: 81  ------NFRSTSGPVIAKAGDLAALLTNLE-DRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
                 +FR  S   I     +AA  + L   R ++ +DE+  ++   +E    A+ +  
Sbjct: 71  FEMNASDFRRKSD--IESIAKIAAQTSGLTGKRKIILLDEVDGINARADEGGIEAIIEL- 127

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI-------E 186
                          IN+S+  ++          NP      +P+R N  EI        
Sbjct: 128 ---------------INVSKNPIVMTA------NNPYSKNL-LPLRQNVLEIPMKRLSET 165

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
            + T +++      +  +DEA  EIA RS G  R A
Sbjct: 166 HVVTALKKICGAEKIECSDEALREIAKRSEGDLRSA 201


>gi|73670349|ref|YP_306364.1| cell division cycle protein [Methanosarcina barkeri str. Fusaro]
 gi|72397511|gb|AAZ71784.1| cell division cycle protein [Methanosarcina barkeri str. Fusaro]
          Length = 764

 Score = 43.1 bits (100), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 33/71 (46%), Gaps = 8/71 (11%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARELG 79
           E+  G  EA + ++  IE      E  D         VL  GPPG GKT LA+ VA E  
Sbjct: 216 EDLGGVKEAITKIREMIELPLKHPELFDRLGIDAPKGVLLYGPPGTGKTMLAKAVANETD 275

Query: 80  VNFRSTSGPVI 90
             F S +GP I
Sbjct: 276 AYFISVNGPEI 286



 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 20/83 (24%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR----- 106
           EA   VL  GPPG GKT LA+ +A E   NF      + AK  DL +      ++     
Sbjct: 521 EAPKGVLLYGPPGTGKTLLAKAIAHESEANF------ITAKGSDLLSKWYGESEKRIAEV 574

Query: 107 ---------DVLFIDEIHRLSII 120
                     ++F+DE+  L+ I
Sbjct: 575 FSRARQVAPSIIFLDELDSLAPI 597


>gi|328471584|gb|EGF42463.1| Holliday junction DNA helicase RuvB [Lactobacillus rhamnosus MTCC
          5462]
          Length = 64

 Score = 43.1 bits (100), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 20/38 (52%), Positives = 24/38 (63%)

Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
          LRPR L ++ GQ      L V+I AAK R E+LDHVL 
Sbjct: 26 LRPRRLAQYIGQDRVKHQLTVYITAAKQREESLDHVLL 63


>gi|83816311|ref|YP_445161.1| cell division protein FtsH [Salinibacter ruber DSM 13855]
 gi|83757705|gb|ABC45818.1| cell division protein FtsH [Salinibacter ruber DSM 13855]
          Length = 686

 Score = 43.1 bits (100), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F S SG       V   A  +  L    ++R   +
Sbjct: 253 VLLVGPPGTGKTLLAKAVAGEAGVPFASISGSDFMEMFVGVGASRVRDLFDQAKERAPCI 312

Query: 109 LFIDEI 114
           +FIDE+
Sbjct: 313 IFIDEV 318


>gi|150019592|ref|YP_001311846.1| ATP-dependent metalloprotease FtsH [Clostridium beijerinckii NCIMB
           8052]
 gi|149906057|gb|ABR36890.1| ATP-dependent metalloprotease FtsH [Clostridium beijerinckii NCIMB
           8052]
          Length = 710

 Score = 43.1 bits (100), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 37/69 (53%), Gaps = 7/69 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ EA  +LK  I+   A A+  +        VL VGPPG GKT +A+ VA E 
Sbjct: 169 TFDDVAGQEEAKESLKEVIDFLNAPAKYTEIGAKLPKGVLLVGPPGTGKTLIAKAVAGEA 228

Query: 79  GVNFRSTSG 87
            V F S SG
Sbjct: 229 RVPFFSLSG 237


>gi|325684696|gb|EGD26850.1| cell division protein FtsH [Lactobacillus delbrueckii subsp. lactis
           DSM 20072]
          Length = 704

 Score = 43.1 bits (100), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108
           VL  GPPG GKT LA+ VA E GV F S SG       V   A  +  L TN +     +
Sbjct: 225 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFTNAKKNAPSI 284

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 285 IFIDEI 290


>gi|307326787|ref|ZP_07605979.1| Shikimate kinase [Streptomyces violaceusniger Tu 4113]
 gi|306887550|gb|EFN18544.1| Shikimate kinase [Streptomyces violaceusniger Tu 4113]
          Length = 282

 Score = 43.1 bits (100), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 19/38 (50%), Positives = 26/38 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG 94
           V+ VGP G+GKTT+ QV+A  LG  FR +   ++A AG
Sbjct: 117 VVLVGPMGVGKTTVGQVLAHRLGTTFRDSDTDIVATAG 154


>gi|300812101|ref|ZP_07092549.1| ATP-dependent metallopeptidase HflB [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
 gi|300496940|gb|EFK32014.1| ATP-dependent metallopeptidase HflB [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
          Length = 737

 Score = 43.1 bits (100), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108
           VL  GPPG GKT LA+ VA E GV F S SG       V   A  +  L TN +     +
Sbjct: 225 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFTNAKKNAPSI 284

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 285 IFIDEI 290


>gi|226324367|ref|ZP_03799885.1| hypothetical protein COPCOM_02148 [Coprococcus comes ATCC 27758]
 gi|225206815|gb|EEG89169.1| hypothetical protein COPCOM_02148 [Coprococcus comes ATCC 27758]
          Length = 416

 Score = 43.1 bits (100), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 28/129 (21%)

Query: 18  DISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEA---------LDHVLFVGPP 63
           DI+LL+P  ++ F      GQ EA   L V +     R  A           ++L VGP 
Sbjct: 59  DINLLKPEEIKAFLDDYVIGQDEAKKVLSVAVYNHYKRIMAEKDLGVELQKSNILMVGPT 118

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------------EDRDVL 109
           G GKT LAQ +A+ L V F       + +AG +   + N+               +  ++
Sbjct: 119 GCGKTFLAQSLAKILNVPFAIADATALTEAGYVGEDVENILLKIIQAADGDIERAEHGII 178

Query: 110 FIDEIHRLS 118
           +IDEI +++
Sbjct: 179 YIDEIDKIT 187


>gi|209522887|ref|ZP_03271445.1| ATP-dependent metalloprotease FtsH [Arthrospira maxima CS-328]
 gi|209496936|gb|EDZ97233.1| ATP-dependent metalloprotease FtsH [Arthrospira maxima CS-328]
          Length = 651

 Score = 43.1 bits (100), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F S SG       V   A  +  L    +D    +
Sbjct: 227 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKDNSPCL 286

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 287 IFIDEI 292


>gi|170289821|ref|YP_001736637.1| AAA family ATPase, CDC48 subfamily protein [Candidatus Korarchaeum
           cryptofilum OPF8]
 gi|170173901|gb|ACB06954.1| AAA family ATPase, CDC48 subfamily [Candidatus Korarchaeum
           cryptofilum OPF8]
          Length = 742

 Score = 43.1 bits (100), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 33/73 (45%), Gaps = 8/73 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
           T E+  G  E    ++  +E      E   H        VL  GPPG GKT LA+ VA E
Sbjct: 191 TYEDIGGLREEIQRIREMVELPLRHPELFRHLGIDPPKGVLLYGPPGTGKTLLAKAVANE 250

Query: 78  LGVNFRSTSGPVI 90
              +F S SGP I
Sbjct: 251 SNAHFISISGPEI 263



 Score = 39.7 bits (91), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT +A+ VA E   NF S  GP
Sbjct: 503 VLLYGPPGCGKTLIAKAVANESEANFISVKGP 534


>gi|77549300|gb|ABA92097.1| ATPase, AAA family protein, expressed [Oryza sativa Japonica Group]
 gi|125576618|gb|EAZ17840.1| hypothetical protein OsJ_33389 [Oryza sativa Japonica Group]
          Length = 1001

 Score = 43.1 bits (100), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 58/119 (48%), Gaps = 17/119 (14%)

Query: 18  DISLLRPRT-LEEFTGQVEACSNLKVFIEAAKARAEALDHV--------LFVGPPGLGKT 68
           ++SL  P+   E+  GQV     L   IE  +   +A +++        L +GPPG  KT
Sbjct: 721 EVSLELPKIRWEDVGGQVRIKEQLIEAIELPQKNPKAFENMGVSPPRGLLMIGPPGCSKT 780

Query: 69  TLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL--EDRD----VLFIDEIHRLSI 119
            +A+ VA E  +NF +  GP +     GD    + +L  + RD    +LF DEI  L++
Sbjct: 781 LMARAVASEAKLNFLAVKGPELFSKWVGDSEKAVRSLFAKARDNAPAILFFDEIDGLAV 839



 Score = 38.1 bits (87), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT+LA   A + GVN  + +GP I
Sbjct: 441 ILLSGPPGTGKTSLATSCAYDEGVNLFTINGPEI 474


>gi|322694786|gb|EFY86607.1| Peroxisomal biogenesis factor 6 [Metarhizium acridum CQMa 102]
          Length = 1373

 Score = 43.1 bits (100), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%)

Query: 41   KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
            ++F +  K R+     +LF GPPG GKT LA+ +A E  +NF S  GP
Sbjct: 1006 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEYSLNFFSVKGP 1049


>gi|310793882|gb|EFQ29343.1| ATPase [Glomerella graminicola M1.001]
          Length = 1397

 Score = 43.1 bits (100), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%)

Query: 41   KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
            ++F +  K R+     +LF GPPG GKT LA+ +A E  +NF S  GP
Sbjct: 1022 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEYSLNFFSVKGP 1065


>gi|307564452|ref|ZP_07626993.1| ATP-dependent metallopeptidase HflB [Prevotella amnii CRIS 21A-A]
 gi|307346812|gb|EFN92108.1| ATP-dependent metallopeptidase HflB [Prevotella amnii CRIS 21A-A]
          Length = 692

 Score = 43.1 bits (100), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 64/261 (24%), Positives = 107/261 (40%), Gaps = 45/261 (17%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ  A   ++  +E  K   +  D         L +GPPG GKT LA+ VA E 
Sbjct: 179 TFKDVAGQEGAKQEVEEIVEFLKNPGKYTDLGGKIPAGALLIGPPGTGKTLLAKAVAGEA 238

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG       V   A  +  +    +++   ++FIDEI  +     +   P+M 
Sbjct: 239 GVPFFSMSGSDFVEMFVGVGASRVRDVFHQAKEKAPCIIFIDEIDAVGRARSK--NPSM- 295

Query: 131 DFQLDLMVGEGPSARSVKINL-----------SRFTLIAATTRVGLLTNPL--QDRFGIP 177
                     G   R   +N            S   ++AAT RV +L   L    RF   
Sbjct: 296 ---------GGNDERENTLNALLTEMDGFGTNSGVIVMAATNRVDMLDKALLRAGRFDRQ 346

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
           I ++  ++ + K I     K+    +  ++  ++ + SR TP  +G  +  V + A +  
Sbjct: 347 IHVDLPDLPERKAIF----KVHMSKIKYDSTVDVDLLSRQTPGFSGADIANVCNEAALIA 402

Query: 238 AKTITREIADAALLRLAIDKM 258
           A+   + +     L  AID++
Sbjct: 403 ARHSDKHVGKQHFLE-AIDRI 422


>gi|302345773|ref|YP_003814126.1| ATP-dependent metallopeptidase HflB [Prevotella melaninogenica ATCC
           25845]
 gi|302149199|gb|ADK95461.1| ATP-dependent metallopeptidase HflB [Prevotella melaninogenica ATCC
           25845]
          Length = 676

 Score = 43.1 bits (100), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 107/264 (40%), Gaps = 51/264 (19%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ  A   ++  +E  K   +  D         L VGPPG GKT LA+ VA E 
Sbjct: 190 TFKDVAGQTGAKQEVQEIVEFLKNPKKYTDLGGKIPKGALLVGPPGTGKTLLAKAVAGEA 249

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG       V   A  +  +    +++   ++FIDEI  +     +   PAM 
Sbjct: 250 GVPFFSMSGSDFVEMFVGVGASRVRDVFHQAKEKSPCIIFIDEIDAVGRARSK--NPAM- 306

Query: 131 DFQLDLMVGEGPSARSVKINL-----------SRFTLIAATTRVGLLTNPL--QDRFGIP 177
                     G   R   +N            S   ++AAT RV +L   L    RF   
Sbjct: 307 ---------GGNDERENTLNALLTEMDGFGTNSGVIVLAATNRVDMLDKALLRAGRFDRQ 357

Query: 178 IRLNFYEIEDLKTIV---QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
           I ++  ++ + K I     R  KL       E   +I + +R TP  +G  +  V + A 
Sbjct: 358 IHVDLPDLPERKEIFLVHMRNLKL-------EKNLDIDLLARQTPGFSGADIANVCNEAA 410

Query: 235 VAHAKTITREIADAALLRLAIDKM 258
           +  A+  + E+     L  A+D++
Sbjct: 411 LIAARHDSTEVTKQDFLD-AVDRI 433


>gi|71027617|ref|XP_763452.1| replication factor C subunit 4 [Theileria parva strain Muguga]
 gi|68350405|gb|EAN31169.1| replication factor C subunit 4, putative [Theileria parva]
          Length = 324

 Score = 43.1 bits (100), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 6/70 (8%)

Query: 16 DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
          D  I   RP TL++  G  E  + L+ FI    A+   + ++L  GPPG GKTT    +A
Sbjct: 6  DIWIEKYRPTTLDDIIGNPEITTRLQ-FI----AKEGNMPNLLLCGPPGTGKTTSVLCLA 60

Query: 76 RE-LGVNFRS 84
          RE LG +F+S
Sbjct: 61 RELLGTHFKS 70


>gi|322709224|gb|EFZ00800.1| Peroxisomal biogenesis factor 6 [Metarhizium anisopliae ARSEF 23]
          Length = 1388

 Score = 43.1 bits (100), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%)

Query: 41   KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
            ++F +  K R+     +LF GPPG GKT LA+ +A E  +NF S  GP
Sbjct: 1021 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEYSLNFFSVKGP 1064


>gi|256833464|ref|YP_003162191.1| Microtubule-severing ATPase [Jonesia denitrificans DSM 20603]
 gi|256686995|gb|ACV09888.1| Microtubule-severing ATPase [Jonesia denitrificans DSM 20603]
          Length = 414

 Score = 43.1 bits (100), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 49/111 (44%), Gaps = 16/111 (14%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAKARA--------EALDHVLFVGPPGLGKTTLAQVVA 75
           P T +   G  E  +  K  IE    RA        + +  VLF G PG GKT LA+++A
Sbjct: 157 PLTFDALGGYDEVKARAKELIETQLGRAGELKAIGAKPVKGVLFTGAPGTGKTHLARIIA 216

Query: 76  RELGVNFRSTSGPVIAK--AGD----LAALLTNLEDRD--VLFIDEIHRLS 118
              G  F   SGP I     GD    L  L  +   R+  ++F DEI  ++
Sbjct: 217 DVSGAVFYQVSGPSIVSKWVGDSEETLRRLFEDAAKRECAIIFFDEIDSIA 267


>gi|309790421|ref|ZP_07684983.1| ATP-dependent metalloprotease FtsH [Oscillochloris trichoides DG6]
 gi|308227534|gb|EFO81200.1| ATP-dependent metalloprotease FtsH [Oscillochloris trichoides DG6]
          Length = 642

 Score = 43.1 bits (100), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 52/104 (50%), Gaps = 15/104 (14%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAK--ARAEALDH-----VLFVGPPGLGKTTLAQVVAREL 78
           T  +  GQ EA  +L   +E  K   +  AL       VL VGPPG GKT L++ VA E 
Sbjct: 166 TFADVAGQEEAKQDLTEIVEFLKFPDKFAALGARIPRGVLMVGPPGTGKTLLSRAVAGEA 225

Query: 79  GVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEI 114
           GV F S SG    +   G  A+ + +L D+       ++FIDEI
Sbjct: 226 GVPFFSISGSEFVEMFVGVGASRVRDLFDQAKRNAPCIIFIDEI 269


>gi|241999600|ref|XP_002434443.1| conserved hypothetical protein [Ixodes scapularis]
 gi|215497773|gb|EEC07267.1| conserved hypothetical protein [Ixodes scapularis]
          Length = 737

 Score = 43.1 bits (100), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT LA+ +A E G+NF S  GP
Sbjct: 496 ILLHGPPGCGKTLLAKAIANESGINFISVKGP 527


>gi|74182120|dbj|BAE34094.1| unnamed protein product [Mus musculus]
          Length = 949

 Score = 43.1 bits (100), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 89/208 (42%), Gaps = 35/208 (16%)

Query: 14  QEDADISLLRPRTL--EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTL 70
           Q D ++ L R + +  E+  G  +    +  FI  ++ R      +L F GPPG+GKT++
Sbjct: 462 QSDENLDLARAQAVLEEDHYGMEDVKKRVLEFIAVSQLRGSTQGKILCFHGPPGVGKTSI 521

Query: 71  AQVVARELGVN-FRSTSGP--------------VIAKAGDLAALLTNLEDRDVL-FIDEI 114
           A+ +AR LG   FR + G               V A  G +   L   +  + L  IDE+
Sbjct: 522 ARSIARALGREYFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLVLIDEV 581

Query: 115 HRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
            ++        S  + E+L P      LD  +        V ++LS+   I     +  +
Sbjct: 582 DKIGRGYQGDPSSALLELLDPEQNANFLDHYL-------DVPVDLSKVLFICTANVIDTI 634

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
             PL+DR  + I ++ Y  ++   I +R
Sbjct: 635 PKPLRDRMEM-INVSGYVAQEKLAIAER 661


>gi|87309826|ref|ZP_01091960.1| cell division protein FtsH [Blastopirellula marina DSM 3645]
 gi|87287590|gb|EAQ79490.1| cell division protein FtsH [Blastopirellula marina DSM 3645]
          Length = 651

 Score = 43.1 bits (100), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108
           VL +GPPG GKT LA+ +A E GV F S SG       V   A  +  L    +D    +
Sbjct: 211 VLLIGPPGTGKTLLARAIAGEAGVPFYSVSGSEFIQMFVGVGASRVRDLFKTAKDNAPSI 270

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 271 VFIDEI 276


>gi|296422059|ref|XP_002840580.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295636799|emb|CAZ84771.1| unnamed protein product [Tuber melanosporum]
          Length = 1239

 Score = 43.1 bits (100), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%)

Query: 41   KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
            ++F +  K R+     +LF GPPG GKT LA+ +A E  +NF S  GP
Sbjct: 963  ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEFSLNFFSIKGP 1006


>gi|288801353|ref|ZP_06406807.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Prevotella sp.
           oral taxon 299 str. F0039]
 gi|288331736|gb|EFC70220.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Prevotella sp.
           oral taxon 299 str. F0039]
          Length = 743

 Score = 43.1 bits (100), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 4/63 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKA----RAEALDHVLFVGPPGLGKTTLAQVVARE 77
           L+ R L    GQ EA   +   +  AKA      + L  +LFVGP G+GKT +A+V+A E
Sbjct: 438 LKERILSMVYGQDEAVEKVVEAVHTAKAGLIDDDKPLASLLFVGPTGVGKTEVARVLAHE 497

Query: 78  LGV 80
           +GV
Sbjct: 498 MGV 500


>gi|271968344|ref|YP_003342540.1| ATPase [Streptosporangium roseum DSM 43021]
 gi|270511519|gb|ACZ89797.1| ATPase central domain-containing protein [Streptosporangium roseum
           DSM 43021]
          Length = 780

 Score = 43.1 bits (100), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 71/254 (27%), Positives = 104/254 (40%), Gaps = 73/254 (28%)

Query: 35  EACSNLKVFIEAAKARAEA-------LDHVLFVGPPGLGKTTLAQVVAREL-GVNFRSTS 86
           E   ++   IEA++ R EA       + H +FVGPPG GKT++A+ VA+         T 
Sbjct: 231 EQVRSIAASIEASRLRKEAGYSTEPPMRHFVFVGPPGTGKTSVARTVAKIFYAFGLLETP 290

Query: 87  GPVIAKAGDL-------AALLTN-LEDR---DVLFIDEIHRL------------SIIVEE 123
             V A+  DL        A+ TN L DR    VLF+DE + L            +  V+ 
Sbjct: 291 YVVEAQRADLVGEFLGATAIKTNELVDRALGGVLFVDEAYSLINSGDGQPDRFGAEAVQT 350

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP-LQDRFGIPIRLNF 182
           +L  A +D    +++  G      +  ++ F          L +NP L  RF   +R   
Sbjct: 351 LLKRAEDDRDRLIIILAG-----YEKEMTSF----------LSSNPGLSSRFAGRVRFPS 395

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAG----RLLRRVRDFAEVAHA 238
           Y  E+L  I                  E+  R RG  R+AG     LL R  D     H 
Sbjct: 396 YAPEELLQI-----------------TELLQRRRGD-RMAGDAGPALLARFEDV----HR 433

Query: 239 KTITREIADAALLR 252
           +TI  E+ +A  +R
Sbjct: 434 RTIVDELGNARFVR 447



 Score = 37.0 bits (84), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 59/125 (47%), Gaps = 24/125 (19%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEA-CSNLKVFIEAAKARAE-------ALDHVLFVGPPG 64
           S E+A   L R   LE    QV A  + L+V    A+ R E        + H +F GPPG
Sbjct: 500 SLEEALADLDRMAGLEPVKRQVHAITAQLRV----ARMRQERGLPTPAQMRHFVFAGPPG 555

Query: 65  LGKTTLAQVVAREL-GVNFRSTSGPVIAKAGDL-------AALLTN-LEDR---DVLFID 112
            GKTT+A+++ R    +   +    V A+  DL        A+ TN L DR    VLF+D
Sbjct: 556 TGKTTVARILGRIFAALGLLAQPDVVEAQRADLVGQHLGATAIKTNELVDRALGGVLFVD 615

Query: 113 EIHRL 117
           E + L
Sbjct: 616 EAYSL 620


>gi|237738484|ref|ZP_04568965.1| DNA polymerase III gamma and tau [Fusobacterium mortiferum ATCC
          9817]
 gi|229420364|gb|EEO35411.1| DNA polymerase III gamma and tau [Fusobacterium mortiferum ATCC
          9817]
          Length = 483

 Score = 43.1 bits (100), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 6/59 (10%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
          RP+  EE  GQ E    +K  +   K         LF GP G+GKTTLA+++A+  GVN
Sbjct: 10 RPKNFEEVAGQKEIVKTIKTSLRNGKTSH----AYLFTGPRGVGKTTLARLIAK--GVN 62


>gi|6573151|gb|AAF17568.1|AF202034_1 endoplasmic reticulum membrane fusion protein [Drosophila
           melanogaster]
          Length = 799

 Score = 43.1 bits (100), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT  A+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 511 VLFYGPPGCGKTLPAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKGPSAAPCV 570

Query: 109 LFIDEIHRLS 118
           LF DE+  ++
Sbjct: 571 LFFDELDSIA 580



 Score = 37.7 bits (86), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN-LEDRD-----V 108
           +L  GPPG GKT +A+ VA E G  F   +GP I    AG+  + L    E+ +     +
Sbjct: 238 ILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAI 297

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 298 IFIDEIDAIA 307


>gi|325119120|emb|CBZ54672.1| hypothetical protein NCLIV_050990 [Neospora caninum Liverpool]
          Length = 387

 Score = 43.1 bits (100), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 5/60 (8%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          +   RPR +EE   Q E    L+  +E        + H+LF GPPG GKT+ A  + REL
Sbjct: 37 VEKYRPRRVEEMAHQEEPKKMLRRILETGN-----MPHLLFYGPPGTGKTSAALALVREL 91


>gi|218246744|ref|YP_002372115.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8801]
 gi|218167222|gb|ACK65959.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8801]
          Length = 646

 Score = 43.1 bits (100), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 54/107 (50%), Gaps = 15/107 (14%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKAR-------AEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T E+  G  EA + L+  ++  K+        A+    VL +GPPG GKT LA+ +A E 
Sbjct: 168 TFEDVAGVDEAKTELQEIVDFLKSAEKYTRLGAKIPKGVLLIGPPGTGKTLLAKAIAGEA 227

Query: 79  GVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEIHRL 117
           GV F S SG    +   G  A+ + +L D+       ++FIDE+  L
Sbjct: 228 GVPFFSISGSEFIELFVGIGASRVRDLFDQAKTQAPCIVFIDELDAL 274


>gi|320588439|gb|EFX00908.1| DNA replication factor c subunit [Grosmannia clavigera kw1407]
          Length = 395

 Score = 43.1 bits (100), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+TL + T Q    + L+  ++A+      L H+LF GPPG GKT+    +A+EL
Sbjct: 40 RPKTLSDVTAQDHTVTVLQRTLQASN-----LPHMLFYGPPGTGKTSTILALAKEL 90


>gi|320161233|ref|YP_004174457.1| ATP-dependent protease La [Anaerolinea thermophila UNI-1]
 gi|319995086|dbj|BAJ63857.1| ATP-dependent protease La [Anaerolinea thermophila UNI-1]
          Length = 839

 Score = 43.1 bits (100), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 82/188 (43%), Gaps = 37/188 (19%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           + FVGPPG+GKT+L Q +AR LG  F R + G V  +A              G +   L 
Sbjct: 388 LCFVGPPGVGKTSLGQSIARALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGRIIQALR 447

Query: 102 NLEDRDVLF-IDEIHRL--------SIIVEEILYPAME-DFQLDLMVGEGPSARSVKINL 151
            +E R+ +F +DEI +L        +  + E+L P    DF+ + +         V  +L
Sbjct: 448 RVESRNPVFMLDEIDKLGADFRGDPASALLEVLDPEQNSDFRDNYI--------EVGFDL 499

Query: 152 SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL----KTIVQRGAKLTGLAVTDEA 207
           S+   I    ++  +  PL DR  I     + E E +    + +V R  K  GL   +  
Sbjct: 500 SQVMFITTANQLETIPPPLLDRMEIISISGYTEGEKVEIAKQYLVPRQLKENGLKPEEAQ 559

Query: 208 ACEIAMRS 215
               A+R+
Sbjct: 560 FTAEALRT 567


>gi|294101443|ref|YP_003553301.1| AAA ATPase central domain protein [Aminobacterium colombiense DSM
           12261]
 gi|293616423|gb|ADE56577.1| AAA ATPase central domain protein [Aminobacterium colombiense DSM
           12261]
          Length = 424

 Score = 43.1 bits (100), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 81/171 (47%), Gaps = 29/171 (16%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP +L++F GQ   +   + L+  +++ K  +      +  GPPG+GKTTL +++A   
Sbjct: 15  MRPSSLDDFVGQNHLLAPGTPLRQILQSGKVPS-----CVLYGPPGVGKTTLVRLMAM-- 67

Query: 79  GVNFRS--TSGPVIAKAGDLAALLTNLEDRDVL-------FIDEIHRLSIIVEEILYPAM 129
            V  RS      V AK  +L  L+   ++  +L       F+DEI+  +   +  L P++
Sbjct: 68  -VTERSLLEINAVSAKVSELRDLVEEAKNLKILSGSAAIAFVDEIYHFNKSQQNALLPSV 126

Query: 130 EDFQLDLMVG---EGPSARSVKINLSRFTL-----IAATTRVGLLTNPLQD 172
           E   + ++VG   E P     K  LSR  +     +A    V +L   L+D
Sbjct: 127 EKGDI-ILVGTTTENPWFEINKTLLSRLVVFQLKPLAEEDLVQILYKALKD 176


>gi|255552465|ref|XP_002517276.1| calmodulin-binding protein, putative [Ricinus communis]
 gi|223543539|gb|EEF45069.1| calmodulin-binding protein, putative [Ricinus communis]
          Length = 1094

 Score = 43.1 bits (100), Expect = 0.062,   Method: Composition-based stats.
 Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 16/109 (14%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARELG 79
           E+  GQ E  + L   +E  +   +A           VL  GPPG  KT +A+ VA E G
Sbjct: 740 EDVGGQKEVKAQLMEAVEWPQKHQDAFQRIGTRPPTGVLMFGPPGCSKTLMARAVASEAG 799

Query: 80  VNFRSTSGPVIAK--AGDLAALLTNLEDR------DVLFIDEIHRLSII 120
           +NF +  GP +     G+    + +L  +       ++F DEI  L++I
Sbjct: 800 LNFFAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAVI 848



 Score = 37.7 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 18/34 (52%), Positives = 23/34 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL  GP G GKT+LA++ A + GVN  S +GP I
Sbjct: 455 VLLHGPTGTGKTSLARLCALDAGVNLLSVNGPEI 488


>gi|190347750|gb|EDK40085.2| hypothetical protein PGUG_04183 [Meyerozyma guilliermondii ATCC
          6260]
          Length = 347

 Score = 43.1 bits (100), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+ L++   Q  A + LK  + +A      L H+LF GPPG GKT+    +AREL
Sbjct: 27 RPKNLDDVASQDHAVNVLKKSLVSAN-----LPHMLFYGPPGTGKTSTVLALAREL 77


>gi|325478877|gb|EGC81987.1| ATP-dependent metallopeptidase HflB [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 651

 Score = 43.1 bits (100), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 50/105 (47%), Gaps = 15/105 (14%)

Query: 25  RTLEEFTGQVEACSNLKVFIE-------AAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +T ++  GQ EA  +L   ++         +  A+    VL VGPPG GKT +AQ VA E
Sbjct: 170 KTFKDVAGQEEAKDSLSEIVDFLHNPGKYKEIGAKVPKGVLLVGPPGTGKTLMAQAVAGE 229

Query: 78  LGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--VLFIDEI 114
             V F S SG    +      A  +  L    +++   ++FIDEI
Sbjct: 230 ANVPFFSISGSEFVEMFVGMGASKVRDLFKQAKEKAPCIVFIDEI 274


>gi|315186751|gb|EFU20509.1| ATP dependent PIM1 peptidase [Spirochaeta thermophila DSM 6578]
          Length = 790

 Score = 43.1 bits (100), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 80/181 (44%), Gaps = 42/181 (23%)

Query: 43  FIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVN-FRSTSG------------- 87
           F+   K + E    ++  VGPPG+GKT++ + +AR LG   FR + G             
Sbjct: 343 FLAVRKIKQETKGSIICLVGPPGVGKTSIGKSIARALGRKFFRFSVGGMRDEAEIKGHRR 402

Query: 88  -PVIAKAGDLAALLTNLEDRDVLF-IDEIHRLSIIVE--------EILYP----AMEDFQ 133
             + A  G +   L  ++ ++ +F IDEI +L I  +        E+L P    A  D  
Sbjct: 403 TYIGAMPGKIIQGLKIVKTKNPVFMIDEIDKLGISFQGDPASALLEVLDPEQNVAFRDHY 462

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           LD           V  ++S+   IA    +  +  PL DR  + IRL+ Y IE+ K  + 
Sbjct: 463 LD-----------VPFDISKILFIATANTLDTIPRPLLDRMEV-IRLSGY-IEEEKIAIA 509

Query: 194 R 194
           R
Sbjct: 510 R 510


>gi|293401426|ref|ZP_06645569.1| cell division protein FtsH [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305064|gb|EFE46310.1| cell division protein FtsH [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 617

 Score = 43.1 bits (100), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 53/105 (50%), Gaps = 15/105 (14%)

Query: 25  RTLEEFTGQVEACSNLKVFIE-------AAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +T  +  GQ EA  +L+  ++        +K  A+     L VGPPG GKT LA+ VA E
Sbjct: 164 KTFRDVAGQEEAKESLQEMVDFLKDPEKYSKIGAQMPKGALLVGPPGTGKTLLAKAVAGE 223

Query: 78  LGVNFRSTSGPVIAK--AGDLAALLTNL--EDRD----VLFIDEI 114
             V F S SG    +   G  AA + +L  + R+    ++FIDEI
Sbjct: 224 ANVPFFSISGSEFVEMFVGRGAARVRDLFKQAREKAPCIVFIDEI 268


>gi|291238303|ref|XP_002739068.1| PREDICTED: replication factor C 5-like [Saccoglossus kowalevskii]
          Length = 331

 Score = 43.1 bits (100), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP  LEE     +  S +  FI     + + L H+LF GPPG GKT+    VA++L
Sbjct: 17 RPNKLEELISHADILSTIDRFI-----KEDRLPHLLFYGPPGTGKTSTILAVAKQL 67


>gi|288800838|ref|ZP_06406295.1| cell division protein FtsH [Prevotella sp. oral taxon 299 str.
           F0039]
 gi|288332299|gb|EFC70780.1| cell division protein FtsH [Prevotella sp. oral taxon 299 str.
           F0039]
          Length = 671

 Score = 43.1 bits (100), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 92/211 (43%), Gaps = 16/211 (7%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VL 109
           L VGPPG GKT LA+ VA E GV F S SG       V   A  +  L    +++   ++
Sbjct: 226 LLVGPPGTGKTLLAKAVAGEAGVPFFSMSGSDFVEMFVGVGASRVRDLFRQAKEKSPCII 285

Query: 110 FIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           FIDEI  +     +       D + + +            N S   ++AAT RV +L + 
Sbjct: 286 FIDEIDAVGRARSKNPSTGGNDERENTLNALLTEMDGFGTN-SGVIILAATNRVDMLDSA 344

Query: 170 L--QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
           L    RF   I +   ++ + K I Q    L  + + D    +I   +R TP  +G  + 
Sbjct: 345 LLRAGRFDRQISVELPDLHERKEIFQ--VHLRNVKIDD--TIDIDFLARQTPGFSGADIA 400

Query: 228 RVRDFAEVAHAKTITREIADAALLRLAIDKM 258
            V + + +  A+   +++     L  A+D++
Sbjct: 401 NVCNESALIAARQNKKQVGKQDFLD-AVDRI 430


>gi|148706233|gb|EDL38180.1| protease, serine, 15, isoform CRA_b [Mus musculus]
          Length = 978

 Score = 43.1 bits (100), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 89/208 (42%), Gaps = 35/208 (16%)

Query: 14  QEDADISLLRPRTL--EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTL 70
           Q D ++ L R + +  E+  G  +    +  FI  ++ R      +L F GPPG+GKT++
Sbjct: 491 QSDENLDLARAQAVLEEDHYGMEDVKKRVLEFIAVSQLRGSTQGKILCFHGPPGVGKTSI 550

Query: 71  AQVVARELGVN-FRSTSGP--------------VIAKAGDLAALLTNLEDRDVL-FIDEI 114
           A+ +AR LG   FR + G               V A  G +   L   +  + L  IDE+
Sbjct: 551 ARSIARALGREYFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLVLIDEV 610

Query: 115 HRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
            ++        S  + E+L P      LD  +        V ++LS+   I     +  +
Sbjct: 611 DKIGRGYQGDPSSALLELLDPEQNANFLDHYL-------DVPVDLSKVLFICTANVIDTI 663

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
             PL+DR  + I ++ Y  ++   I +R
Sbjct: 664 PEPLRDRMEM-INVSGYVAQEKLAIAER 690


>gi|39974649|ref|XP_368715.1| hypothetical protein MGG_00529 [Magnaporthe oryzae 70-15]
 gi|110628929|gb|ABG79929.1| PEX6 protein [Magnaporthe grisea]
 gi|145018571|gb|EDK02850.1| hypothetical protein MGG_00529 [Magnaporthe oryzae 70-15]
          Length = 1375

 Score = 43.1 bits (100), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%)

Query: 41   KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
            ++F +  K R+     +LF GPPG GKT LA+ +A E  +NF S  GP
Sbjct: 1020 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEYSLNFFSVKGP 1063


>gi|257438694|ref|ZP_05614449.1| cell division protein FtsH [Faecalibacterium prausnitzii A2-165]
 gi|257198829|gb|EEU97113.1| cell division protein FtsH [Faecalibacterium prausnitzii A2-165]
          Length = 688

 Score = 43.1 bits (100), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDRD------V 108
           VL VGPPG GKT LA+  A E GV F S SG   V    G  A+ + +L D+       +
Sbjct: 225 VLLVGPPGTGKTLLARACAGEAGVPFYSISGSDFVEMYVGVGASRVRDLFDKAKKTMPCI 284

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 285 IFIDEI 290


>gi|254474645|ref|ZP_05088031.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Ruegeria sp.
           R11]
 gi|214028888|gb|EEB69723.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Ruegeria sp.
           R11]
          Length = 773

 Score = 43.1 bits (100), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 72/161 (44%), Gaps = 23/161 (14%)

Query: 10  RNVSQEDADISLLRPRTLEEFT-GQVEACSNLKVFIEAAKAR----AEALDHVLFVGPPG 64
           +NVS++DA++     R+L+    GQ  A   L   I+ A+A      + + + LF GP G
Sbjct: 449 KNVSKDDAEVLKDLERSLKRVVFGQDAAIEALSSAIKLARAGLREPEKPIGNYLFAGPTG 508

Query: 65  LGKTTLAQVVARELGVNF---------------RSTSGPVIAKAGDLAALLTNLEDRD-- 107
           +GKT +A+ +A  LGV                 R    P      D   LLT+  D+   
Sbjct: 509 VGKTEVAKQLADTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGVDQHPH 568

Query: 108 -VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSV 147
            VL +DEI +    V  IL   M++ QL    G   + R+V
Sbjct: 569 CVLLLDEIEKAHPDVFNILLQVMDNGQLTDHNGRTVNFRNV 609


>gi|50552766|ref|XP_503793.1| YALI0E10747p [Yarrowia lipolytica]
 gi|49649662|emb|CAG79384.1| YALI0E10747p [Yarrowia lipolytica]
          Length = 378

 Score = 43.1 bits (100), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP++L++ + Q  A + LK  + +A      L H+LF GPPG GKT+    +A+EL
Sbjct: 33 RPKSLDDVSSQDHAVTVLKRTLGSAN-----LPHMLFYGPPGTGKTSTVLALAKEL 83


>gi|281209849|gb|EFA84017.1| replication factor C subunit [Polysphondylium pallidum PN500]
          Length = 357

 Score = 43.1 bits (100), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 5/60 (8%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          ++  RP+T++E + Q E    LK  +E        L H+LF GPPG GKT+    VA +L
Sbjct: 18 VNKYRPKTVDEVSHQDEVVKALKRSLETGN-----LPHLLFYGPPGTGKTSTILAVAMDL 72


>gi|238610683|ref|XP_002397785.1| hypothetical protein MPER_01728 [Moniliophthora perniciosa FA553]
 gi|215472970|gb|EEB98715.1| hypothetical protein MPER_01728 [Moniliophthora perniciosa FA553]
          Length = 226

 Score = 43.1 bits (100), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           VL  GPPG GKT LA  +A ELGV F + S P I    +G+    L    D        +
Sbjct: 89  VLLHGPPGCGKTLLANAIAGELGVPFVNISAPSIVSGMSGESEKGLREAFDEAKRVAPSL 148

Query: 109 LFIDEI 114
           LFIDEI
Sbjct: 149 LFIDEI 154


>gi|257059785|ref|YP_003137673.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8802]
 gi|256589951|gb|ACV00838.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8802]
          Length = 646

 Score = 43.1 bits (100), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 54/107 (50%), Gaps = 15/107 (14%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKAR-------AEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T E+  G  EA + L+  ++  K+        A+    VL +GPPG GKT LA+ +A E 
Sbjct: 168 TFEDVAGVDEAKTELQEIVDFLKSAEKYTRLGAKIPKGVLLIGPPGTGKTLLAKAIAGEA 227

Query: 79  GVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEIHRL 117
           GV F S SG    +   G  A+ + +L D+       ++FIDE+  L
Sbjct: 228 GVPFFSISGSEFIELFVGIGASRVRDLFDQAKTQAPCIVFIDELDAL 274


>gi|150865911|ref|XP_001385318.2| Replication factor C, subunit RFC4 [Scheffersomyces stipitis CBS
          6054]
 gi|149387167|gb|ABN67289.2| Replication factor C, subunit RFC4 [Scheffersomyces stipitis CBS
          6054]
          Length = 369

 Score = 43.1 bits (100), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RPR L++   Q  A   LK  +E+A      L H+LF GPPG GKT+    ++++L
Sbjct: 30 RPRNLDDVASQDHAVKVLKKTMESAN-----LPHMLFYGPPGTGKTSTILALSKQL 80


>gi|126739846|ref|ZP_01755537.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Roseobacter
           sp. SK209-2-6]
 gi|126719078|gb|EBA15789.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Roseobacter
           sp. SK209-2-6]
          Length = 743

 Score = 43.1 bits (100), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 73/161 (45%), Gaps = 23/161 (14%)

Query: 10  RNVSQEDADISLLRPRTLEEFT-GQVEACSNLKVFIEAAKAR----AEALDHVLFVGPPG 64
           ++VS++DA++     +TL+    GQ +A   L   I+ A+A      + + + LF GP G
Sbjct: 419 KSVSKDDAEVLKDLEKTLKRVVFGQDDAIDALSSAIKLARAGLREPEKPIGNYLFAGPTG 478

Query: 65  LGKTTLAQVVARELGVNF---------------RSTSGPVIAKAGDLAALLTNLEDRD-- 107
           +GKT +A+ +A  LGV                 R    P      D   LLT+  D+   
Sbjct: 479 VGKTEVAKQLADTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGVDQHPH 538

Query: 108 -VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSV 147
            VL +DEI +    V  IL   M++ QL    G   + R+V
Sbjct: 539 CVLLLDEIEKAHPDVFNILLQVMDNGQLTDHNGRAVNFRNV 579


>gi|115465954|ref|NP_001056576.1| Os06g0109400 [Oryza sativa Japonica Group]
 gi|55296101|dbj|BAD67691.1| putative cell survival CED-4-interacting protein MAC-1 [Oryza
           sativa Japonica Group]
 gi|55296176|dbj|BAD67894.1| putative cell survival CED-4-interacting protein MAC-1 [Oryza
           sativa Japonica Group]
 gi|113594616|dbj|BAF18490.1| Os06g0109400 [Oryza sativa Japonica Group]
 gi|222634830|gb|EEE64962.1| hypothetical protein OsJ_19854 [Oryza sativa Japonica Group]
          Length = 770

 Score = 43.1 bits (100), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 53/127 (41%), Gaps = 22/127 (17%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED---------RD 107
           +L  GPPG GKTTLA  +A E GV F   S P +  +G   A   N+             
Sbjct: 228 LLLHGPPGCGKTTLAHAIANETGVPFYKISAPEVV-SGVSGASEENIRSLFKKAYRTAPS 286

Query: 108 VLFIDEIHRLSIIVEEI-----------LYPAMEDFQLDLMVGEGP-SARSVKINLSRFT 155
           ++FIDEI  ++   E +           L   M+++   +  G G   + S +       
Sbjct: 287 IVFIDEIDAIASKRENLQREMERRIVTQLMTCMDEYHQQIGSGSGDVGSESAEKKPGYVI 346

Query: 156 LIAATTR 162
           +I AT R
Sbjct: 347 VIGATNR 353



 Score = 39.7 bits (91), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 19/31 (61%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           L  GPPG GKT +A+ VA E G NF    GP
Sbjct: 533 LLFGPPGCGKTLIAKAVAHEAGANFIHIKGP 563


>gi|331268352|ref|YP_004394844.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum
           BKT015925]
 gi|329124902|gb|AEB74847.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum
           BKT015925]
          Length = 662

 Score = 43.1 bits (100), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 36/69 (52%), Gaps = 7/69 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH-------VLFVGPPGLGKTTLAQVVAREL 78
           T +E  G  E  + L+  ++  K   + LD        +L VGPPG GKT LA+ VA E 
Sbjct: 165 TFKEVAGADEEKAELEEIVDFLKDPNKYLDMGARIPKGILLVGPPGTGKTLLAKAVAGEA 224

Query: 79  GVNFRSTSG 87
           GV F S SG
Sbjct: 225 GVPFFSISG 233


>gi|327401967|ref|YP_004342806.1| AAA family ATPase [Archaeoglobus veneficus SNP6]
 gi|327317475|gb|AEA48091.1| AAA family ATPase, CDC48 subfamily [Archaeoglobus veneficus SNP6]
          Length = 808

 Score = 43.1 bits (100), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 8/76 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DV 108
           VL  GPPG GKT +A+ VA E+G +F + +GP I     G+    L  + +        +
Sbjct: 231 VLLHGPPGTGKTLIAKAVANEIGASFFTINGPEIMSKFYGESEQRLREIFEEAKENAPSI 290

Query: 109 LFIDEIHRLSIIVEEI 124
           +FIDEI  ++   EE+
Sbjct: 291 IFIDEIDSIAPKREEV 306



 Score = 37.7 bits (86), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 19/31 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT +A+ VA E   NF S  G
Sbjct: 569 VLLYGPPGTGKTLIAKAVANETKANFISVKG 599


>gi|298676049|ref|YP_003727799.1| AAA family ATPase [Methanohalobium evestigatum Z-7303]
 gi|298289037|gb|ADI75003.1| AAA family ATPase, CDC48 subfamily [Methanohalobium evestigatum
           Z-7303]
          Length = 741

 Score = 43.1 bits (100), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 20/34 (58%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT +AQ VA E  VNF S  GP I
Sbjct: 501 LLLFGPPGTGKTLVAQAVANESNVNFISVKGPQI 534


>gi|317133210|ref|YP_004092524.1| ATP-dependent metalloprotease FtsH [Ethanoligenens harbinense
           YUAN-3]
 gi|315471189|gb|ADU27793.1| ATP-dependent metalloprotease FtsH [Ethanoligenens harbinense
           YUAN-3]
          Length = 622

 Score = 43.1 bits (100), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 38/66 (57%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL VGPPG GKT LA+ VA E GV F S SG    +   G  A+ + +L D+       +
Sbjct: 203 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFDQAKKSSPCI 262

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 263 IFIDEI 268


>gi|258405847|ref|YP_003198589.1| ATP-dependent metalloprotease FtsH [Desulfohalobium retbaense DSM
           5692]
 gi|257798074|gb|ACV69011.1| ATP-dependent metalloprotease FtsH [Desulfohalobium retbaense DSM
           5692]
          Length = 636

 Score = 43.1 bits (100), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 72/252 (28%), Positives = 105/252 (41%), Gaps = 42/252 (16%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           EE T  VE  SN K F        +    VL VG PG GKT L++ VA E GV F S SG
Sbjct: 163 EELTEIVEFLSNPKKFTRLGGRIPKG---VLLVGGPGTGKTLLSRAVAGEAGVPFFSISG 219

Query: 88  P------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
                  V   A  +  L    +     ++FIDEI  +               Q    +G
Sbjct: 220 SDFVEMFVGVGASRVRDLFVQGKKNAPCLIFIDEIDAVG-------------RQRGAGLG 266

Query: 140 EGPSARSVKIN-----LSRFT------LIAATTRVGLLTNPL--QDRFGIPIRLNFYEIE 186
            G   R   +N     +  F       LIAAT R  +L   L    RF   + +   +++
Sbjct: 267 GGHDEREQTLNQLLVEMDGFESNEGVILIAATNRPDVLDPALLRPGRFDRQVMVPNPDLK 326

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             K+I++  A+ T LA       ++ + +RGTP  +G  L  + + A +A AK + ++  
Sbjct: 327 GRKSILEVHARHTPLA----GDVDMGVIARGTPGFSGADLENLVNEAALAAAK-VNKDQV 381

Query: 247 DAALLRLAIDKM 258
           D      A DK+
Sbjct: 382 DMNDFEDAKDKV 393


>gi|225573067|ref|ZP_03781822.1| hypothetical protein RUMHYD_01258 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039573|gb|EEG49819.1| hypothetical protein RUMHYD_01258 [Blautia hydrogenotrophica DSM
           10507]
          Length = 432

 Score = 43.1 bits (100), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 28/130 (21%)

Query: 17  ADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARA---EALD------HVLFVGP 62
           +DI+L+ P+ +  F      GQ EA   L V +     R    ++LD      ++L +GP
Sbjct: 60  SDINLMTPQEIHNFLDEYVIGQDEAKKALSVAVYNHYKRVMAPKSLDVELQKSNILMLGP 119

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRD-------V 108
            G GKT LAQ +A+ L V F       + +AG +   + N+        D D       +
Sbjct: 120 TGSGKTLLAQTLAKLLNVPFAIADATTLTEAGYVGEDVENILLKIIQAADYDIERAQYGI 179

Query: 109 LFIDEIHRLS 118
           ++IDEI +++
Sbjct: 180 IYIDEIDKIT 189


>gi|171185181|ref|YP_001794100.1| TIP49 domain-containing protein [Thermoproteus neutrophilus
          V24Sta]
 gi|170934393|gb|ACB39654.1| TIP49 domain protein [Thermoproteus neutrophilus V24Sta]
          Length = 451

 Score = 43.1 bits (100), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 28/50 (56%)

Query: 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
          F GQ EA     + ++  K    A   VL VGPPG GKT LA  +ARELG
Sbjct: 39 FVGQTEAREAAYIVVKMIKEGKFAGKGVLIVGPPGTGKTALALGIARELG 88


>gi|187918326|ref|YP_001883889.1| DNA polymerase III subunits gamma and tau [Borrelia hermsii DAH]
 gi|119861174|gb|AAX16969.1| DNA polymerase III subunit gamma/tau [Borrelia hermsii DAH]
          Length = 550

 Score = 43.1 bits (100), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 88/225 (39%), Gaps = 29/225 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPR      GQ      LK  IE  +  A A    +F GP G+GKT+ A+  AR L    
Sbjct: 12  RPRDFNSLEGQDFVVETLKHSIENNRI-ANAY---IFSGPRGVGKTSSARAFARCLNCQ- 66

Query: 83  RSTSGPVIAKAGDLAAL--LTNLEDRDVLFIDEIHRLSI-----IVEEILYPAMEDFQLD 135
              +GP I   G   +   + N    D++ ID     S+     I EEI++P        
Sbjct: 67  ---AGPTIMPCGVCFSCKSIDNDNSLDIIEIDGASNTSVQDVRQIKEEIMFPPASSKYRV 123

Query: 136 LMVGEGPSARSVKINL---------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNF--YE 184
            ++ E     +   N          S    I ATT V  L + ++ R       NF    
Sbjct: 124 YIIDEVHMLSNSAFNALLKTIEEPPSYIVFIFATTEVHKLPDTIKSRCQ---HFNFRLLP 180

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           +E +  +++       +   DEA   IA +S G+ R A  L  ++
Sbjct: 181 LEKIYEMLKHVCLEDNIKYEDEALRWIAYKSGGSVRDAYTLFDQI 225


>gi|110003920|emb|CAK98260.1| probable cell division protein ftsh [Spiroplasma citri]
          Length = 672

 Score = 43.1 bits (100), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 109/250 (43%), Gaps = 42/250 (16%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           EE T  VE    LK   + +   A A   VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 194 EEKTELVELVDYLKNPQKYSSMGARAPKGVLMEGPPGTGKTLLAKAVAGEAGVPFFSISG 253

Query: 88  P------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
                  V   A  +  +    +     ++FIDEI  +               +  + +G
Sbjct: 254 SEFEEMFVGVGASRIREMFIAAKKAAPCIIFIDEIDAVG-------------RKRTVSIG 300

Query: 140 EGPSARSVK---INLSRF------TLIAATTRVGLLTNPL--QDRFGIPIRLNFYEIEDL 188
            G + +++    + +  F       ++AAT RV +L + L    RF   I+++  +I + 
Sbjct: 301 SGANEQTLNQLLVEMDGFGTNTGVIVMAATNRVDVLDSALLRPGRFDRQIQISLPDINER 360

Query: 189 KTIVQRGAKLTGLAVTDEAAC-EIAMRSRGTPRIAGRLLRRVRDFAEV----AHAKTITR 243
           + I++  A+    AV+ E     IA R   TP  +G  L  V + A +     + K IT 
Sbjct: 361 EAILKLHAR--NKAVSTEVDFRRIAER---TPGFSGAQLENVLNEAAILCVRKNLKIITV 415

Query: 244 EIADAALLRL 253
            I D A+ R+
Sbjct: 416 NIIDEAIDRV 425


>gi|67478786|ref|XP_654775.1| Replication factor C subunit 4 [Entamoeba histolytica HM-1:IMSS]
 gi|56471850|gb|EAL49389.1| Replication factor C subunit 4, putative [Entamoeba histolytica
           HM-1:IMSS]
          Length = 329

 Score = 43.1 bits (100), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 96/234 (41%), Gaps = 41/234 (17%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +S ++A     RP+TL++  GQ E    LK  + +       L ++LF GPPG GKTT  
Sbjct: 1   MSGQNAWSEKYRPKTLDDVQGQEEVIKLLKSSLNSG------LPNLLFFGPPGSGKTTSI 54

Query: 72  QVVARE----------LGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIH 115
             VA E          L +N  +  G  + +       + ++       D  ++ +DE  
Sbjct: 55  LAVAHELFQGYFKERVLELNASNQRGIEMVRTTLKNYAMQDVTHYDGTPDYKLIILDESD 114

Query: 116 RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
            L+   +  L   MEDF  +                +RF LI     +  +  P+  R  
Sbjct: 115 ALTPDAQTALRRMMEDFTKN----------------TRFCLIC--NYISRILPPISSR-C 155

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           I  R +    E +   +Q   +  G +VT+EA   +++ S G  R    LL+++
Sbjct: 156 IKFRFSALPKEIVSNRLQMICEKEGFSVTNEAIQAVSILSEGDLRYGIGLLQKL 209


>gi|323705587|ref|ZP_08117161.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535064|gb|EGB24841.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 611

 Score = 43.1 bits (100), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 34/69 (49%), Gaps = 7/69 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  E    L+  +E  K   + LD        VL VGPPG GKT LA+ VA E 
Sbjct: 156 TFNDVAGADEEKEELQEIVEFLKFPKKFLDLGARIPKGVLLVGPPGTGKTLLAKAVAGEA 215

Query: 79  GVNFRSTSG 87
           GV F S SG
Sbjct: 216 GVPFFSISG 224


>gi|219127681|ref|XP_002184059.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217404290|gb|EEC44237.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 349

 Score = 43.1 bits (100), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 6/62 (9%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE-LGVN 81
          RPR LE+  G  E  S L+     A +R   L +++  GPPG GKTT    +AR+ LG +
Sbjct: 39 RPRVLEDVVGNEETVSRLR-----AISRTGNLPNLILAGPPGTGKTTSVHALARQLLGAS 93

Query: 82 FR 83
          ++
Sbjct: 94 YK 95


>gi|213409838|ref|XP_002175689.1| ribosome biogenesis ATPase RIX7 [Schizosaccharomyces japonicus
           yFS275]
 gi|212003736|gb|EEB09396.1| ribosome biogenesis ATPase RIX7 [Schizosaccharomyces japonicus
           yFS275]
          Length = 782

 Score = 43.1 bits (100), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 21/34 (61%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL  GPPG GKT LA  +A ELGV F S S P I
Sbjct: 210 VLLHGPPGCGKTMLANALANELGVPFISISAPSI 243



 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 534 VLLWGPPGCGKTLLAKAVANESKANFISVRGP 565


>gi|146414968|ref|XP_001483454.1| hypothetical protein PGUG_04183 [Meyerozyma guilliermondii ATCC
          6260]
          Length = 347

 Score = 43.1 bits (100), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+ L++   Q  A + LK  + +A      L H+LF GPPG GKT+    +AREL
Sbjct: 27 RPKNLDDVASQDHAVNVLKKSLVSAN-----LPHMLFYGPPGTGKTSTVLALAREL 77


>gi|257076346|ref|ZP_05570707.1| cell division cycle protein 48 [Ferroplasma acidarmanus fer1]
          Length = 744

 Score = 43.1 bits (100), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 16/85 (18%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--V 108
           VL  GPPG GKT +A+ VA E G NF + +GP I           L  +    ++ +  +
Sbjct: 227 VLLNGPPGTGKTLIAKAVANESGANFFAINGPEIMSKYYGQSEQKLREIFQKADESEPSI 286

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQ 133
           +FIDEI  ++        P  ED Q
Sbjct: 287 IFIDEIDSIA--------PKREDVQ 303



 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 8/69 (11%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDR------DVL 109
           L  GPPG GKT LA+ VA E   NF S  GP V++K  GD    +  +  +       ++
Sbjct: 505 LLYGPPGTGKTLLAKAVANESNANFISVKGPEVLSKWVGDSEKAVREIFKKAKQVSPAII 564

Query: 110 FIDEIHRLS 118
           F+DEI  ++
Sbjct: 565 FMDEIDSIA 573


>gi|219849535|ref|YP_002463968.1| ATP-dependent metalloprotease FtsH [Chloroflexus aggregans DSM
           9485]
 gi|310943124|sp|B8G4Q6|FTSH_CHLAD RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|219543794|gb|ACL25532.1| ATP-dependent metalloprotease FtsH [Chloroflexus aggregans DSM
           9485]
          Length = 656

 Score = 43.1 bits (100), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 52/104 (50%), Gaps = 15/104 (14%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAK--ARAEALDH-----VLFVGPPGLGKTTLAQVVAREL 78
           T  +  GQ EA  +L   +E  K   +  AL       VL VGPPG GKT L++ VA E 
Sbjct: 167 TFADVAGQEEAKQDLAEIVEFLKFPDKFAALGARIPRGVLMVGPPGTGKTLLSRAVAGEA 226

Query: 79  GVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEI 114
           GV F S SG    +   G  A+ + +L D+       ++FIDEI
Sbjct: 227 GVPFFSISGSEFVEMFVGVGASRVRDLFDQAKRNAPCIVFIDEI 270


>gi|50424927|ref|XP_461055.1| DEHA2F16016p [Debaryomyces hansenii CBS767]
 gi|49656724|emb|CAG89431.1| DEHA2F16016p [Debaryomyces hansenii]
          Length = 368

 Score = 43.1 bits (100), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+ L++   Q  A   LK  +E+A      L H+LF GPPG GKT+    +A++L
Sbjct: 30 RPKNLDDVASQDHAVKILKKTLESAN-----LPHMLFYGPPGTGKTSTILALAKQL 80


>gi|124515828|gb|EAY57337.1| probable ATPase, AAA family [Leptospirillum rubarum]
          Length = 444

 Score = 43.1 bits (100), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 89/214 (41%), Gaps = 36/214 (16%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           SLL P   EEF GQ        +       R+     ++  GPPG GK+    ++ + L 
Sbjct: 15  SLLFPDRPEEFLGQPHLMGERGILRRLIAVRS--FRSMVIHGPPGCGKSAFVHLLQKVLP 72

Query: 80  VNFR-----STSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
            +F       +SG  + KA D            +L I+EI R +   +++L PA+E   L
Sbjct: 73  FHFEVVRAGESSGGELKKAIDRGVSYRQSGQDCLLVIEEIDRFTRTQQDVLVPALERGDL 132

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI--EDLKTIV 192
            L++G                 ++    +  L  PL  R    +  +F  +  EDL T++
Sbjct: 133 -LLLG-----------------LSFDNPLRALLPPLASRL---LLFSFQPLSPEDLLTLL 171

Query: 193 QRGAKL------TGLAVTDEAACEIAMRSRGTPR 220
           +RG +       + ++++ EAA  +  RS G  R
Sbjct: 172 ERGRQFLEKRDRSPVSISPEAASVLVRRSGGDGR 205


>gi|12836291|dbj|BAB23591.1| unnamed protein product [Mus musculus]
          Length = 949

 Score = 43.1 bits (100), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 89/208 (42%), Gaps = 35/208 (16%)

Query: 14  QEDADISLLRPRTL--EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTL 70
           Q D ++ L R + +  E+  G  +    +  FI  ++ R      +L F GPPG+GKT++
Sbjct: 462 QSDENLDLARAQAVLEEDHYGMEDVKKRVLEFIAVSQLRGSTQGKILCFHGPPGVGKTSI 521

Query: 71  AQVVARELGVN-FRSTSGP--------------VIAKAGDLAALLTNLEDRDVL-FIDEI 114
           A+ +AR LG   FR + G               V A  G +   L   +  + L  IDE+
Sbjct: 522 ARSIARALGREYFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLVLIDEV 581

Query: 115 HRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
            ++        S  + E+L P      LD  +        V ++LS+   I     +  +
Sbjct: 582 DKIGRGYQGDPSSALLELLDPEQNANFLDHYL-------DVPVDLSKVLFICTANVIDTI 634

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
             PL+DR  + I ++ Y  ++   I +R
Sbjct: 635 PEPLRDRMEM-INVSGYVAQEKLAIAER 661


>gi|86142240|ref|ZP_01060750.1| hypothetical protein MED217_11359 [Leeuwenhoekiella blandensis
            MED217]
 gi|85830992|gb|EAQ49449.1| hypothetical protein MED217_11359 [Leeuwenhoekiella blandensis
            MED217]
          Length = 1632

 Score = 43.1 bits (100), Expect = 0.066,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 27/44 (61%)

Query: 48   KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA 91
            K+R + +  +L + PPG GKTTL + +A  LG+ F   +GP I 
Sbjct: 1260 KSRTDRMGLLLLISPPGYGKTTLMEYIANRLGLVFMKINGPAIG 1303


>gi|15790604|ref|NP_280428.1| cell division cycle protein [Halobacterium sp. NRC-1]
 gi|169236341|ref|YP_001689541.1| AAA-type ATPase (transitional ATPase homolog) [Halobacterium
           salinarum R1]
 gi|10581124|gb|AAG19908.1| cell division cycle protein [Halobacterium sp. NRC-1]
 gi|167727407|emb|CAP14195.1| AAA-type ATPase (transitional ATPase homolog) [Halobacterium
           salinarum R1]
          Length = 394

 Score = 43.1 bits (100), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 42/70 (60%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAKA-GDLAALLTNL------EDRDV 108
           +LF GPPG GKT LA+ VA+E G +    +GP +I+K  G+   ++  +      + R +
Sbjct: 192 ILFHGPPGTGKTLLAKAVAKETGSSIYLVNGPEIISKWYGETEDIIREIFSNAKKKKRAI 251

Query: 109 LFIDEIHRLS 118
           +FIDE+  ++
Sbjct: 252 IFIDEVDSIA 261


>gi|307187495|gb|EFN72557.1| Vacuolar protein sorting-associating protein 4A [Camponotus
           floridanus]
          Length = 440

 Score = 43.1 bits (100), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 9/70 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELG--VNFRSTSGPVIAKA-GDLAALLTNL------EDRD 107
           +L  GPPG GK+ LA+ VA E      F ++S  +++K  G+   L+ NL      ++R 
Sbjct: 166 ILLFGPPGTGKSYLAKAVATEANQATFFSASSSDLVSKWLGESEKLVKNLFELARQKERS 225

Query: 108 VLFIDEIHRL 117
           ++FIDEI  L
Sbjct: 226 IIFIDEIDSL 235


>gi|288932521|ref|YP_003436581.1| ATPase AAA, CDC48 subfamily [Ferroglobus placidus DSM 10642]
 gi|288894769|gb|ADC66306.1| AAA family ATPase, CDC48 subfamily [Ferroglobus placidus DSM 10642]
          Length = 805

 Score = 43.1 bits (100), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DV 108
           VL  GPPG GKT +A+ VA E+G  F + +GP I     G+    L  + ++       +
Sbjct: 229 VLLYGPPGTGKTLIAKAVANEIGATFLTINGPEIMSKFYGESEQRLREIFEKAKENAPSI 288

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 289 IFIDEIDAIA 298



 Score = 37.0 bits (84), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 19/31 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT +A+ VA E   NF S  G
Sbjct: 568 VLLYGPPGTGKTLIAKAVANESEANFISVKG 598


>gi|218197427|gb|EEC79854.1| hypothetical protein OsI_21333 [Oryza sativa Indica Group]
          Length = 770

 Score = 43.1 bits (100), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 53/127 (41%), Gaps = 22/127 (17%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED---------RD 107
           +L  GPPG GKTTLA  +A E GV F   S P +  +G   A   N+             
Sbjct: 228 LLLHGPPGCGKTTLAHAIANETGVPFYKISAPEVV-SGVSGASEENIRSLFKKAYRTAPS 286

Query: 108 VLFIDEIHRLSIIVEEI-----------LYPAMEDFQLDLMVGEGP-SARSVKINLSRFT 155
           ++FIDEI  ++   E +           L   M+++   +  G G   + S +       
Sbjct: 287 IVFIDEIDAIASKRENLQREMERRIVTQLMTCMDEYHQQIGSGSGDVGSESAEKKPGYVI 346

Query: 156 LIAATTR 162
           +I AT R
Sbjct: 347 VIGATNR 353



 Score = 39.7 bits (91), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 19/31 (61%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           L  GPPG GKT +A+ VA E G NF    GP
Sbjct: 533 LLFGPPGCGKTLIAKAVAHEAGANFIHIKGP 563


>gi|116329595|ref|YP_799314.1| MoxR-like ATPase [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116332484|ref|YP_802201.1| MoxR-like ATPase [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
 gi|116122488|gb|ABJ80381.1| MoxR-like ATPase [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116127351|gb|ABJ77443.1| MoxR-like ATPase [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
          Length = 335

 Score = 43.1 bits (100), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 98/214 (45%), Gaps = 31/214 (14%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M+++ L + +V      +  L+    +E TGQ E   N+ V +           HVL  G
Sbjct: 7   MEKDPLSAEDVEFARIKLETLKKELEKEITGQNEVIRNVIVCLICQ-------GHVLLEG 59

Query: 62  PPGLGKTTLAQVVARELGVNFRSTS-GPVIAKAGDLAALLTN-----LEDRD------VL 109
            PGL KT LA+ +AR L ++F+     P +  A  +  ++ N      E R       VL
Sbjct: 60  MPGLAKTLLARSLARALDLDFKRIQFTPDLLPADLVGTVVFNPKTAEFETRKGPVFTGVL 119

Query: 110 FIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL-TN 168
             DEI+R    V+  L  +ME  +  + +G+    ++ K++   F +IA    +    T 
Sbjct: 120 LADEINRAPAKVQSALLESME--EKTITIGD----KTYKLD-KPFLVIATQNPIDQDGTY 172

Query: 169 PL----QDRFGIPIRLNFYEIEDLKTIVQRGAKL 198
           PL     DRF + + +++  +E+  +I+ +  KL
Sbjct: 173 PLPEAQMDRFFMKVNVHYPALEEEVSILDQHGKL 206


>gi|84500106|ref|ZP_00998372.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Oceanicola
           batsensis HTCC2597]
 gi|84392040|gb|EAQ04308.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Oceanicola
           batsensis HTCC2597]
          Length = 776

 Score = 43.1 bits (100), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 73/161 (45%), Gaps = 23/161 (14%)

Query: 10  RNVSQEDADISLLRPRTLEEFT-GQVEACSNLKVFIEAAKAR----AEALDHVLFVGPPG 64
           +NV+++DA++     +TL+    GQ  A  +L   I+ A+A      + + + LF GP G
Sbjct: 452 KNVTKDDAEVLKDLEQTLKRVVFGQDLAIESLSSAIKLARAGLREPEKPIGNYLFAGPTG 511

Query: 65  LGKTTLAQVVARELGVNF---------------RSTSGPVIAKAGDLAALLTNLEDRD-- 107
           +GKT +A+ +A  LGV                 R    P      D   LLT+  D+   
Sbjct: 512 VGKTEVAKQLADSLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGVDQHPH 571

Query: 108 -VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSV 147
            VL +DEI +    V  IL   M++ QL    G   + R+V
Sbjct: 572 CVLLLDEIEKAHPDVYNILLQVMDNGQLTDHNGRTVNFRNV 612



 Score = 37.4 bits (85), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 58/113 (51%), Gaps = 31/113 (27%)

Query: 55  DHVLFVGPPGLGKTTLAQVVARELGVNFRSTS------------GPVIAKA---GD---- 95
           ++ L VG PG+GKT +A+ +AR++ V+  + S            G ++A     GD    
Sbjct: 221 NNPLLVGDPGVGKTAIAEGLARKI-VSGETPSVLANTTIYSLDMGALLAGTRYRGDFEER 279

Query: 96  LAALLTNLEDRD--VLFIDEIHRL---------SIIVEEILYPAMEDFQLDLM 137
           L A++T LED +  VLFIDEIH +         ++    +L PA++  +L  M
Sbjct: 280 LKAVVTELEDHEDAVLFIDEIHTVIGAGATSGGAMDASNLLKPALQGGKLRCM 332


>gi|257067200|ref|YP_003153456.1| ATP-dependent metalloprotease FtsH [Anaerococcus prevotii DSM
           20548]
 gi|256799080|gb|ACV29735.1| ATP-dependent metalloprotease FtsH [Anaerococcus prevotii DSM
           20548]
          Length = 662

 Score = 42.7 bits (99), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 50/105 (47%), Gaps = 15/105 (14%)

Query: 25  RTLEEFTGQVEACSNLKVFIE-------AAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +T ++  GQ EA  +L   ++         +  A+    VL VGPPG GKT +AQ VA E
Sbjct: 170 KTFKDVAGQEEAKDSLSEIVDFLHNPGKYKEIGAKVPKGVLLVGPPGTGKTLMAQAVAGE 229

Query: 78  LGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--VLFIDEI 114
             V F S SG    +      A  +  L    +++   ++FIDEI
Sbjct: 230 ANVPFFSISGSEFVEMFVGMGASKVRDLFKQAKEKAPCIVFIDEI 274


>gi|224150428|ref|XP_002336955.1| predicted protein [Populus trichocarpa]
 gi|222837218|gb|EEE75597.1| predicted protein [Populus trichocarpa]
          Length = 316

 Score = 42.7 bits (99), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 8/71 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG--PVIAKAGDLAALLTNLEDRD------V 108
           VLF GPPG  KT LA+ +A E   NF S  G  P+    G+  A + ++ D+       V
Sbjct: 190 VLFYGPPGCDKTLLAKAIANECQANFISIKGPEPLTMWFGESEANVRDVFDKARQSAPCV 249

Query: 109 LFIDEIHRLSI 119
           LF DE+  ++I
Sbjct: 250 LFFDELDSIAI 260


>gi|222152178|ref|YP_002561338.1| DNA polymerase III gamma and tau subunits homolog [Macrococcus
           caseolyticus JCSC5402]
 gi|222121307|dbj|BAH18642.1| DNA polymerase III gamma and tau subunits homolog [Macrococcus
           caseolyticus JCSC5402]
          Length = 546

 Score = 42.7 bits (99), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 8/93 (8%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELG 79
           + R ++ EE  GQ    + LK  I+  K     + H  LF GP G GKT++A++ A+ + 
Sbjct: 9   VFRSQSFEEVVGQKHVTTTLKNAIQKNK-----ISHAYLFNGPRGTGKTSIAKIFAKAIN 63

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID 112
               +   P    + D    +T   + DV+ ID
Sbjct: 64  CTVSTDGEP--CNSCDTCVSITKGTNSDVIEID 94


>gi|218191427|gb|EEC73854.1| hypothetical protein OsI_08618 [Oryza sativa Indica Group]
          Length = 729

 Score = 42.7 bits (99), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 5/57 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
            RPRTL  FT   E    LK  +       E   H++F GPPG GK++L + V  E+
Sbjct: 380 YRPRTLGGFTCHREQIEQLKQLVST-----EFCPHIIFKGPPGSGKSSLCRAVVTEI 431


>gi|161527523|ref|YP_001581349.1| ATPase AAA [Nitrosopumilus maritimus SCM1]
 gi|160338824|gb|ABX11911.1| AAA family ATPase, CDC48 subfamily [Nitrosopumilus maritimus SCM1]
          Length = 713

 Score = 42.7 bits (99), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 38/79 (48%), Gaps = 8/79 (10%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLT 101
           K   EA   VL  GPPG GKT LA+ VA E   +F S SGP I           +  +  
Sbjct: 205 KIGVEAPKGVLLYGPPGTGKTLLAKAVAGETNAHFISLSGPEIMGKYYGESEEKIREIFN 264

Query: 102 NLEDR--DVLFIDEIHRLS 118
             E+    ++FIDEI  ++
Sbjct: 265 QAEENSPSIIFIDEIDSIA 283


>gi|119872171|ref|YP_930178.1| replication factor C large subunit [Pyrobaculum islandicum DSM
          4184]
 gi|150415668|sp|A1RSA3|RFCL_PYRIL RecName: Full=Replication factor C large subunit; Short=RFC large
          subunit; AltName: Full=Clamp loader large subunit
 gi|119673579|gb|ABL87835.1| replication factor C large subunit [Pyrobaculum islandicum DSM
          4184]
          Length = 423

 Score = 42.7 bits (99), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 33/71 (46%), Gaps = 15/71 (21%)

Query: 23 RPRTLEEFTGQVEA--------CSNLKVFIEAAKARAEALDH-------VLFVGPPGLGK 67
          RP+T EE   Q EA        C+  K   E     A+  D        VL  GPPG+GK
Sbjct: 10 RPKTFEEIVNQEEAKYTLASWICAKFKAPREFCTRWAKKKDKEIVEAKAVLLAGPPGIGK 69

Query: 68 TTLAQVVAREL 78
          TT+   +ARE+
Sbjct: 70 TTIVHALAREI 80


>gi|325853892|ref|ZP_08171408.1| ATP-dependent metallopeptidase HflB [Prevotella denticola CRIS
           18C-A]
 gi|325484229|gb|EGC87159.1| ATP-dependent metallopeptidase HflB [Prevotella denticola CRIS
           18C-A]
          Length = 676

 Score = 42.7 bits (99), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 67/264 (25%), Positives = 109/264 (41%), Gaps = 51/264 (19%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ  A   ++  +E  K   +  D         L +GPPG GKT LA+ VA E 
Sbjct: 190 TFKDVAGQTGAKQEVQEIVEFLKNPKKYTDLGGKIPKGALLIGPPGTGKTLLAKAVAGEA 249

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG       V   A  +  +    +++   ++FIDEI  +     +   PAM 
Sbjct: 250 GVPFFSMSGSDFVEMFVGVGASRVRDVFRQAKEKSPCIIFIDEIDAVGRARSK--NPAM- 306

Query: 131 DFQLDLMVGEGPSARSVKINL-----------SRFTLIAATTRVGLLTNPL--QDRFGIP 177
                     G   R   +N            S   ++AAT RV +L   L    RF   
Sbjct: 307 ---------GGNDERENTLNALLTEMDGFGTNSGVIVLAATNRVDMLDKALLRAGRFDRQ 357

Query: 178 IRLNFYEIEDLKTIV---QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
           I ++  ++ + K I     R  KL       E   +I + +R TP  +G  +  V + A 
Sbjct: 358 IHVDLPDLTERKAIFLVHMRPLKL-------EKNLDIDLLARQTPGFSGADIANVCNEAA 410

Query: 235 VAHAKTITREIADAALLRLAIDKM 258
           +  A+  +++++    L  A+D++
Sbjct: 411 LIAARHNSKDVSKQDFLD-AVDRI 433


>gi|301631595|ref|XP_002944883.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like
           [Xenopus (Silurana) tropicalis]
          Length = 421

 Score = 42.7 bits (99), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +AR+L V F       + +AG    D+  +++ L        
Sbjct: 117 NILLIGPTGSGKTLLAQTLARQLDVPFVMADATTLTEAGYVGEDVENIISKLLQSCNYDV 176

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 177 EKAQRGIIYIDEIDKIS 193


>gi|300711240|ref|YP_003737054.1| cell division control protein 48 [Halalkalicoccus jeotgali B3]
 gi|299124923|gb|ADJ15262.1| cell division control protein 48 [Halalkalicoccus jeotgali B3]
          Length = 701

 Score = 42.7 bits (99), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 21/41 (51%), Positives = 24/41 (58%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           K   E    VL  GPPG GKT LA+ +A E GVNF   +GP
Sbjct: 474 KTATEPPSGVLLYGPPGTGKTLLARAIASESGVNFIHVAGP 514



 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 23/34 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL  GPPG GKT +A+ VA E+  +F + SGP I
Sbjct: 220 VLLYGPPGTGKTLIARAVANEVDASFHTVSGPEI 253


>gi|219123158|ref|XP_002181897.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217406498|gb|EEC46437.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 550

 Score = 42.7 bits (99), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 31/68 (45%), Gaps = 8/68 (11%)

Query: 29 EFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARELGV 80
          +  G  E   N++  +E    R E   H        VL  GPPG GKT LA  VA +LGV
Sbjct: 1  DLGGMDEVVKNIRQLVEYPLIRPELYSHLGVDPPRGVLLRGPPGTGKTHLANAVAGQLGV 60

Query: 81 NFRSTSGP 88
           F   S P
Sbjct: 61 PFFRVSAP 68



 Score = 42.4 bits (98), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           V+  GPPG GKT LA+ +A E G NF S  GP
Sbjct: 317 VMLYGPPGCGKTLLAKAIAHESGANFISVKGP 348


>gi|145591861|ref|YP_001153863.1| AAA family ATPase, CDC48 subfamily protein [Pyrobaculum arsenaticum
           DSM 13514]
 gi|145283629|gb|ABP51211.1| AAA family ATPase, CDC48 subfamily [Pyrobaculum arsenaticum DSM
           13514]
          Length = 737

 Score = 42.7 bits (99), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 53/118 (44%), Gaps = 17/118 (14%)

Query: 24  PRTLEEFTGQVE-ACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVV 74
           PR   E  G +E A   ++  +E      E   H        +L +GPPG GKT LA+ V
Sbjct: 171 PRITWEDIGDLEDAKQKIRELVELPLRHPELFKHLGIEPPKGILLIGPPGTGKTLLAKAV 230

Query: 75  ARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DVLFIDEIHRLSIIVEEI 124
           A E    F + +GP I     G+  A L  + +        ++FIDEI  ++   EE+
Sbjct: 231 ANEANAYFVAINGPEIMSKYYGESEARLREIFEEAKKNAPAIIFIDEIDAIAPKREEV 288



 Score = 40.4 bits (93), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 17/32 (53%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG+GKT  A+ VA E G NF +  GP
Sbjct: 501 ILLFGPPGVGKTLFAKAVATESGANFIAVRGP 532


>gi|116753926|ref|YP_843044.1| AAA family ATPase, CDC48 subfamily protein [Methanosaeta
           thermophila PT]
 gi|116665377|gb|ABK14404.1| AAA family ATPase, CDC48 subfamily [Methanosaeta thermophila PT]
          Length = 721

 Score = 42.7 bits (99), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT +A+ VA E G+NF S  GP
Sbjct: 484 VLLYGPPGTGKTMIARAVATESGINFISIKGP 515



 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 55/131 (41%), Gaps = 16/131 (12%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGP 62
           N++ E  +    R  T E+  G       ++  +E      E            VL  GP
Sbjct: 158 NITSEQIEGFQFRDVTYEDIGGLSREIRAIREMVELPLRHPEVFQKLGITPPKGVLLHGP 217

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL-EDR-----DVLFIDEI 114
           PG GKT +A+ VA E    F + SGP I     G+    L  + ED       ++FIDEI
Sbjct: 218 PGTGKTLIARAVASETDATFTAISGPEIMSRYYGESEQRLRQIFEDAQKSAPSIIFIDEI 277

Query: 115 HRLSIIVEEIL 125
             ++   EE+L
Sbjct: 278 DSIAPKREEVL 288


>gi|116182002|ref|XP_001220850.1| hypothetical protein CHGG_01629 [Chaetomium globosum CBS 148.51]
 gi|88185926|gb|EAQ93394.1| hypothetical protein CHGG_01629 [Chaetomium globosum CBS 148.51]
          Length = 1421

 Score = 42.7 bits (99), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%)

Query: 41   KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
            ++F +  K R+     +LF GPPG GKT LA+ +A E  +NF S  GP
Sbjct: 1021 ELFAKGMKKRS----GILFYGPPGTGKTLLAKAIATEYSLNFFSVKGP 1064


>gi|291457503|ref|ZP_06596893.1| proteasome-activating nucleotidase [Bifidobacterium breve DSM
           20213]
 gi|291381338|gb|EFE88856.1| proteasome-activating nucleotidase [Bifidobacterium breve DSM
           20213]
          Length = 401

 Score = 42.7 bits (99), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 16/109 (14%)

Query: 26  TLEEFTGQVEACSNLKVFIE-----AAKARA---EALDHVLFVGPPGLGKTTLAQVVARE 77
           T + F G  +  +  K  IE     +A+ RA   + +  V+F G PG GKT LA+++A  
Sbjct: 151 TFDSFGGYEQVITRAKELIETQLGNSAQMRAIGAKPIKGVIFTGAPGTGKTHLARIIANV 210

Query: 78  LGVNFRSTSGPVIAK--AGDLAALL------TNLEDRDVLFIDEIHRLS 118
               F   SGP I     GD    L         + R ++F DEI  ++
Sbjct: 211 ADAQFYLVSGPTIVSKYVGDSEETLRMIFAAAQADKRAIIFFDEIDSIA 259


>gi|255549872|ref|XP_002515987.1| Cell division protein ftsH, putative [Ricinus communis]
 gi|223544892|gb|EEF46407.1| Cell division protein ftsH, putative [Ricinus communis]
          Length = 884

 Score = 42.7 bits (99), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDR--DV 108
           +L  GPPG+GKT LA+ VA E GVNF S S     +      A  + +L    ++    V
Sbjct: 455 ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKENAPSV 514

Query: 109 LFIDEI 114
           +FIDE+
Sbjct: 515 VFIDEL 520


>gi|167629386|ref|YP_001679885.1| ATP-dependent metalloprotease ftsh [Heliobacterium modesticaldum
           Ice1]
 gi|167592126|gb|ABZ83874.1| ATP-dependent metalloprotease ftsh [Heliobacterium modesticaldum
           Ice1]
          Length = 601

 Score = 42.7 bits (99), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 32/60 (53%), Gaps = 3/60 (5%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           EE    VE   + K F+E     A+    VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 168 EELQEVVEFLKHPKKFVELG---AKIPKGVLLFGPPGTGKTLLARAVAGEAGVPFFSISG 224


>gi|167393557|ref|XP_001740625.1| hypothetical protein [Entamoeba dispar SAW760]
 gi|165895198|gb|EDR22945.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
          Length = 439

 Score = 42.7 bits (99), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 33/60 (55%), Gaps = 2/60 (3%)

Query: 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG--VNFRSTSG 87
            GQ  A   L + +E  KA+  A   +L  G PG GKT LAQ +A+ELG  V FR+  G
Sbjct: 39 LVGQENAREALGLIVEMVKAKRMAGRGILLAGAPGTGKTALAQALAKELGEHVPFRAMVG 98


>gi|163737811|ref|ZP_02145228.1| ATP-dependent Clp protease ATP-binding subunit clpA [Phaeobacter
           gallaeciensis BS107]
 gi|161389337|gb|EDQ13689.1| ATP-dependent Clp protease ATP-binding subunit clpA [Phaeobacter
           gallaeciensis BS107]
          Length = 773

 Score = 42.7 bits (99), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 72/161 (44%), Gaps = 23/161 (14%)

Query: 10  RNVSQEDADISLLRPRTLEEFT-GQVEACSNLKVFIEAAKA----RAEALDHVLFVGPPG 64
           +NVS++DA++     R+L+    GQ  A   L   I+ A+A      + + + LF GP G
Sbjct: 449 KNVSKDDAEVLKDLERSLKRVVFGQDAAIDALSSAIKLARAGLREPEKPIGNYLFAGPTG 508

Query: 65  LGKTTLAQVVARELGVNF---------------RSTSGPVIAKAGDLAALLTNLEDRD-- 107
           +GKT +A+ +A  LGV                 R    P      D   LLT+  D+   
Sbjct: 509 VGKTEVAKQLADTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGVDQHPH 568

Query: 108 -VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSV 147
            VL +DEI +    V  IL   M++ QL    G   + R+V
Sbjct: 569 CVLLLDEIEKAHPDVFNILLQVMDNGQLTDHNGRTVNFRNV 609


>gi|146422813|ref|XP_001487341.1| hypothetical protein PGUG_00718 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 1159

 Score = 42.7 bits (99), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 17/32 (53%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +LF GPPG GKT LA+ +A    +NF S  GP
Sbjct: 872 ILFYGPPGTGKTLLAKAIATNFSLNFFSVKGP 903


>gi|115676917|ref|XP_797089.2| PREDICTED: similar to peroxisome biogenesis disorder protein 1
            [Strongylocentrotus purpuratus]
 gi|115925913|ref|XP_001181846.1| PREDICTED: similar to peroxisome biogenesis disorder protein 1
            [Strongylocentrotus purpuratus]
          Length = 1508

 Score = 42.7 bits (99), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 22/32 (68%)

Query: 57   VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
            +L  GPPG GKT L  VVA+E G+NF S  GP
Sbjct: 1032 LLLYGPPGTGKTLLGGVVAKECGLNFISIKGP 1063


>gi|26984237|gb|AAN85210.1| mitochondrial ATP-dependent protease Lon [Mus musculus]
          Length = 949

 Score = 42.7 bits (99), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 89/208 (42%), Gaps = 35/208 (16%)

Query: 14  QEDADISLLRPRTL--EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTL 70
           Q D ++ L R + +  E+  G  +    +  FI  ++ R      +L F GPPG+GKT++
Sbjct: 462 QSDENLDLARAQAVLEEDHYGMEDVKKRVLEFIAVSQLRGSTQGKILCFHGPPGVGKTSI 521

Query: 71  AQVVARELGVN-FRSTSGP--------------VIAKAGDLAALLTNLEDRDVL-FIDEI 114
           A+ +AR LG   FR + G               V A  G +   L   +  + L  IDE+
Sbjct: 522 ARSIARALGREYFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLVLIDEV 581

Query: 115 HRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
            ++        S  + E+L P      LD  +        V ++LS+   I     +  +
Sbjct: 582 DKIGRGYQGDPSSALLELLDPEQNANFLDHYL-------DVPVDLSKVLFICTANVIDTI 634

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
             PL+DR  + I ++ Y  ++   I +R
Sbjct: 635 PEPLRDRMEM-INVSGYVAQEKLAIAER 661


>gi|51246773|ref|YP_066657.1| ATP-dependent protease La [Desulfotalea psychrophila LSv54]
 gi|50877810|emb|CAG37650.1| probable ATP-dependent protease La [Desulfotalea psychrophila
           LSv54]
          Length = 489

 Score = 42.7 bits (99), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 69/164 (42%), Gaps = 36/164 (21%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF------------------RSTSGPVIAKAGDLAA 98
           + FVGPPG+GKT+L + VAR +G  F                  R+  G +  +   +  
Sbjct: 58  LCFVGPPGVGKTSLGKSVARAMGRKFHRLSLGGMRDEAEIRGHRRTYIGAMPGRI--IQG 115

Query: 99  LLTNLEDRDVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN 150
           L T   +  V  +DEI ++        S  + E+L P      +D       +   + ++
Sbjct: 116 LKTVATNNPVFMMDEIDKVGSDYRGDPSSALLEVLDPEQNSDFVD-------NYLDIPMD 168

Query: 151 LSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           LS+   I        +  PL DR  I IRL+ Y +E+   I +R
Sbjct: 169 LSQVMFITTANMTDTIPGPLLDRMEI-IRLSGYTLEEKIAIARR 211


>gi|330804227|ref|XP_003290099.1| hypothetical protein DICPUDRAFT_154583 [Dictyostelium purpureum]
 gi|325079808|gb|EGC33391.1| hypothetical protein DICPUDRAFT_154583 [Dictyostelium purpureum]
          Length = 1015

 Score = 42.7 bits (99), Expect = 0.069,   Method: Composition-based stats.
 Identities = 68/278 (24%), Positives = 108/278 (38%), Gaps = 67/278 (24%)

Query: 8   LSRNVSQEDA-DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGL 65
           L  NV   D  DIS ++     +  G  +    ++ FI   K R      + L VGPPG 
Sbjct: 522 LPWNVFSSDCLDISKIKKSLDNDHYGLKDVKEMIQTFIAVGKLRGSIGGKIILIVGPPGT 581

Query: 66  GKTTLAQVVARELGVNF------------------RSTSGPVIAKAGDLAALLTNLEDRD 107
           GKT++ + +A+ L   F                  R+  G +  K   + AL        
Sbjct: 582 GKTSIGKSIAKSLDRQFYRISVGGLSDVHEIKGHRRTYLGAMPGKI--IQALKFVKTSNP 639

Query: 108 VLFIDEIHRLS---------IIVEEILYP----AMEDFQLDLMVGEGPSARSVKINLSRF 154
           V+ IDEI ++S           + EIL P    +  D+ LDL             +LS+ 
Sbjct: 640 VILIDEIDKISQSSHHGDPTSTLLEILDPQQNKSFTDYYLDL-----------PYDLSKV 688

Query: 155 TLIAATTRVGLLTNPLQDRFGIPIRLN------------FYEIEDLKTIVQRGAKLTGLA 202
             I     +  +  PL DR  + IRLN             Y I +++T  + G     + 
Sbjct: 689 LFICTANSLHTIPPPLLDRMDV-IRLNGYVQSEQMEIAKHYLIPNIRT--ETGMTEDQVT 745

Query: 203 VTDEAA---CEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
           V+D++    CE   R  G  R   + + ++  F ++AH
Sbjct: 746 VSDDSIKQLCEFYCRESGV-RNLKKTIEKI--FRKIAH 780


>gi|319936956|ref|ZP_08011366.1| cell division protein ftsH [Coprobacillus sp. 29_1]
 gi|319807892|gb|EFW04471.1| cell division protein ftsH [Coprobacillus sp. 29_1]
          Length = 655

 Score = 42.7 bits (99), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 45/95 (47%), Gaps = 11/95 (11%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           EE T  V+   N K F+      A+    VL VGPPG GKT LA+ VA E  V F S SG
Sbjct: 181 EELTELVDFLKNPKKFVSMG---AKIPRGVLLVGPPGTGKTLLARAVAGEANVPFYSISG 237

Query: 88  P------VIAKAGDLAALLTNLEDRD--VLFIDEI 114
                  V   AG +  +    +     ++FIDEI
Sbjct: 238 SEFVEMFVGVGAGRVRDMFKKAKQNAPCIIFIDEI 272


>gi|296454485|ref|YP_003661628.1| vesicle-fusing ATPase [Bifidobacterium longum subsp. longum JDM301]
 gi|296183916|gb|ADH00798.1| Vesicle-fusing ATPase [Bifidobacterium longum subsp. longum JDM301]
          Length = 402

 Score = 42.7 bits (99), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 16/109 (14%)

Query: 26  TLEEFTGQVEACSNLKVFIE-----AAKARA---EALDHVLFVGPPGLGKTTLAQVVARE 77
           T + F G  +  +  K  IE     +A+ RA   + +  V+F G PG GKT LA+++A  
Sbjct: 151 TFDSFGGYEQVITRAKELIETQLGNSAQMRAIGAKPIKGVIFTGAPGTGKTHLARIIANV 210

Query: 78  LGVNFRSTSGPVIAK--AGDLAALL------TNLEDRDVLFIDEIHRLS 118
               F   SGP I     GD    L         + R ++F DEI  ++
Sbjct: 211 ADAQFYLVSGPTIVSKYVGDSEETLRMIFAAAQADKRAIIFFDEIDSIA 259


>gi|213691690|ref|YP_002322276.1| Vesicle-fusing ATPase [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|213523151|gb|ACJ51898.1| Vesicle-fusing ATPase [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|320457780|dbj|BAJ68401.1| putative ATPase [Bifidobacterium longum subsp. infantis ATCC 15697]
          Length = 402

 Score = 42.7 bits (99), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 16/109 (14%)

Query: 26  TLEEFTGQVEACSNLKVFIE-----AAKARA---EALDHVLFVGPPGLGKTTLAQVVARE 77
           T + F G  +  +  K  IE     +A+ RA   + +  V+F G PG GKT LA+++A  
Sbjct: 151 TFDSFGGYEQVITRAKELIETQLGNSAQMRAIGAKPIKGVIFTGAPGTGKTHLARIIANV 210

Query: 78  LGVNFRSTSGPVIAK--AGDLAALL------TNLEDRDVLFIDEIHRLS 118
               F   SGP I     GD    L         + R ++F DEI  ++
Sbjct: 211 ADAQFYLVSGPTIVSKYVGDSEETLRMIFAAAQADKRAIIFFDEIDSIA 259


>gi|190344856|gb|EDK36620.2| hypothetical protein PGUG_00718 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 1159

 Score = 42.7 bits (99), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 17/32 (53%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +LF GPPG GKT LA+ +A    +NF S  GP
Sbjct: 872 ILFYGPPGTGKTLLAKAIATNFSLNFFSVKGP 903


>gi|222480785|ref|YP_002567022.1| AAA family ATPase, CDC48 subfamily [Halorubrum lacusprofundi ATCC
           49239]
 gi|222453687|gb|ACM57952.1| AAA family ATPase, CDC48 subfamily [Halorubrum lacusprofundi ATCC
           49239]
          Length = 754

 Score = 42.7 bits (99), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 23/34 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL  GPPG GKT +A+ VA E+  NF + SGP I
Sbjct: 228 VLLHGPPGTGKTLIAKAVANEIDANFHTISGPEI 261



 Score = 40.0 bits (92), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 20/37 (54%), Positives = 22/37 (59%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +A   VL  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 496 QAAKGVLMYGPPGTGKTLLAKAVANESESNFISIKGP 532


>gi|2062173|gb|AAB63647.1| cell division protein FtsH isolog [Arabidopsis thaliana]
          Length = 983

 Score = 42.7 bits (99), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDR--DV 108
           +L  GPPG+GKT LA+ VA E GVNF S S     +      A  + AL     +    V
Sbjct: 608 ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRALYQEARENAPSV 667

Query: 109 LFIDEI 114
           +FIDE+
Sbjct: 668 VFIDEL 673


>gi|328952154|ref|YP_004369488.1| anti-sigma H sporulation factor, LonB [Desulfobacca acetoxidans DSM
           11109]
 gi|328452478|gb|AEB08307.1| anti-sigma H sporulation factor, LonB [Desulfobacca acetoxidans DSM
           11109]
          Length = 822

 Score = 42.7 bits (99), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 92/223 (41%), Gaps = 57/223 (25%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           +  VGPPG+GKT+LA+ VAR LG NF R + G V  +A              G +   L 
Sbjct: 363 LCLVGPPGVGKTSLAKSVARALGRNFVRLSLGGVRDEAEIRGHRRTYIGALPGKIIQSLR 422

Query: 102 NLEDRDVLF-IDEIHRLSI--------IVEEILYP----AMEDFQLDLMVGEGPSARSVK 148
             +  + +F +DE+ ++S          + E+L P    A  D  LD+            
Sbjct: 423 KAKTNNPVFCLDEVDKMSTDFRGDPSAALLEVLDPEQNNAFNDHYLDM-----------D 471

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY-EIEDLKT----IVQRGAKLTGLAV 203
            +LS    I     +  +  PLQDR  I IR+  Y E+E L      ++ +  +  GL  
Sbjct: 472 YDLSEVMFITTANTLYSIPLPLQDRMEI-IRIPGYTEVEKLNIAQLFLIPKQRQANGLTP 530

Query: 204 TDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
            +    E A            +L  +R +   A  + + REIA
Sbjct: 531 ENIEFSENA------------ILNVIRQYTREAGVRNLEREIA 561


>gi|313113476|ref|ZP_07799065.1| ATP-dependent metallopeptidase HflB [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310624203|gb|EFQ07569.1| ATP-dependent metallopeptidase HflB [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 723

 Score = 42.7 bits (99), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDRD------V 108
           VL VGPPG GKT LA+  A E GV F S SG   V    G  A+ + +L D+       +
Sbjct: 250 VLLVGPPGTGKTLLARACAGEAGVPFYSISGSDFVEMYVGVGASRVRDLFDKAKKSMPCI 309

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 310 IFIDEI 315


>gi|302344647|ref|YP_003809176.1| ATP-dependent protease La [Desulfarculus baarsii DSM 2075]
 gi|301641260|gb|ADK86582.1| ATP-dependent protease La [Desulfarculus baarsii DSM 2075]
          Length = 812

 Score = 42.7 bits (99), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 90/217 (41%), Gaps = 48/217 (22%)

Query: 43  FIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS--------------- 86
           F+   K   E    +L FVGPPG+GKT+L + +AR +G  F   S               
Sbjct: 367 FLAVRKLNPEVQGSILCFVGPPGVGKTSLGRSIARSMGRKFSRISLGGVRDEAEIRGHRR 426

Query: 87  GPVIAKAGDLAALLTNLEDRD-VLFIDEIHRL--------SIIVEEILYP----AMEDFQ 133
             V A  G +   +  +  ++ VL +DEI +L        S  + E+L P    +  D  
Sbjct: 427 TYVGAMPGRIIQSIRRVGSKNPVLMLDEIDKLGADFRGDPSSALLEVLDPEQNRSFSDHY 486

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED-----L 188
           LD           V  +LS+   +     +  +  PL+DR  I I +  Y  E+      
Sbjct: 487 LD-----------VAFDLSKVMFVTTANVLDTIPAPLRDRMEI-IEIPGYTAEEKLKIAK 534

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRS--RGTPRIAG 223
           + +V R  KL GL   + A  + A+ +  +G  R AG
Sbjct: 535 RYLVPRQRKLHGLGAANLAINDGAINALIQGYTREAG 571


>gi|74187378|dbj|BAE36666.1| unnamed protein product [Mus musculus]
          Length = 949

 Score = 42.7 bits (99), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 89/208 (42%), Gaps = 35/208 (16%)

Query: 14  QEDADISLLRPRTL--EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTL 70
           Q D ++ L R + +  E+  G  +    +  FI  ++ R      +L F GPPG+GKT++
Sbjct: 462 QSDENLDLARAQAVLEEDHYGMEDVKKRVLEFIAVSQLRGSTQGKILCFHGPPGVGKTSI 521

Query: 71  AQVVARELGVN-FRSTSGP--------------VIAKAGDLAALLTNLEDRDVL-FIDEI 114
           A+ +AR LG   FR + G               V A  G +   L   +  + L  IDE+
Sbjct: 522 ARSIARALGREYFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLVLIDEV 581

Query: 115 HRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
            ++        S  + E+L P      LD  +        V ++LS+   I     +  +
Sbjct: 582 DKIGRGYQGDPSSALLELLDPEQNANFLDHYL-------DVPVDLSKVLFICTANVIDTI 634

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
             PL+DR  + I ++ Y  ++   I +R
Sbjct: 635 PEPLRDRMEM-INVSGYVAQEKLAIAER 661


>gi|328774020|gb|EGF84057.1| hypothetical protein BATDEDRAFT_84775 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 358

 Score = 42.7 bits (99), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 33/63 (52%), Gaps = 6/63 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81
           RP  L+E     +  S +  FI+  K     L H+LF GPPG GKT+     AR+L G  
Sbjct: 43  RPSRLDELISHKDIISTIVRFIDENK-----LPHMLFYGPPGTGKTSTILACARKLYGDK 97

Query: 82  FRS 84
           FRS
Sbjct: 98  FRS 100


>gi|304407484|ref|ZP_07389136.1| Sigma 54 interacting domain protein [Paenibacillus curdlanolyticus
           YK9]
 gi|304343435|gb|EFM09277.1| Sigma 54 interacting domain protein [Paenibacillus curdlanolyticus
           YK9]
          Length = 567

 Score = 42.7 bits (99), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 8/95 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+ +++  GQ++    LK  + +A  +     HV+  GPPG+GKT  A+VV  E   N 
Sbjct: 64  RPQAMQDIVGQIDGLKALKAALCSANPQ-----HVIIYGPPGVGKTAAARVVLEEAKKNP 118

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVL--FIDEIH 115
            S   P  AK  ++ A     ++R +    I  +H
Sbjct: 119 ASPFLPE-AKFTEIDATTARFDERGIADPLIGSVH 152


>gi|169839076|ref|ZP_02872264.1| Holliday junction DNA helicase B [candidate division TM7
           single-cell isolate TM7a]
          Length = 53

 Score = 42.7 bits (99), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 29/52 (55%)

Query: 164 GLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRS 215
           G  + PL+DRFG+  RL FY  E+L  IVQ  +   G      AA E+A RS
Sbjct: 1   GYDSAPLRDRFGMDFRLQFYTREELARIVQIASVKLGKECEKAAALEVAARS 52


>gi|166368947|ref|YP_001661220.1| cell division protein [Microcystis aeruginosa NIES-843]
 gi|166091320|dbj|BAG06028.1| cell division protein [Microcystis aeruginosa NIES-843]
          Length = 625

 Score = 42.7 bits (99), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL VGPPG GKT LA+ VA E GV+F S SG    +   G  AA + +L ++       +
Sbjct: 205 VLLVGPPGTGKTLLAKAVAGEAGVSFFSISGSEFVELFVGAGAARVRDLFEQAKKKAPCI 264

Query: 109 LFIDEI 114
           +FIDE+
Sbjct: 265 IFIDEL 270


>gi|18401080|ref|NP_566541.1| EMB2083 (embryo defective 2083); ATP binding / ATP-dependent
           peptidase/ ATPase/ metalloendopeptidase/
           metallopeptidase/ nucleoside-triphosphatase/ nucleotide
           binding / serine-type endopeptidase [Arabidopsis
           thaliana]
 gi|332642273|gb|AEE75794.1| AAA-type ATPase family protein [Arabidopsis thaliana]
          Length = 876

 Score = 42.7 bits (99), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDR--DV 108
           +L  GPPG+GKT LA+ VA E GVNF S S     +      A  + AL     +    V
Sbjct: 446 ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRALYQEARENAPSV 505

Query: 109 LFIDEI 114
           +FIDE+
Sbjct: 506 VFIDEL 511


>gi|304315869|ref|YP_003851014.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777371|gb|ADL67930.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 611

 Score = 42.7 bits (99), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 34/69 (49%), Gaps = 7/69 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  E    L+  +E  K   + LD        VL VGPPG GKT LA+ VA E 
Sbjct: 156 TFNDVAGADEEKEELQEIVEFLKFPKKFLDLGARIPKGVLLVGPPGTGKTLLAKAVAGEA 215

Query: 79  GVNFRSTSG 87
           GV F S SG
Sbjct: 216 GVPFFSISG 224


>gi|261405362|ref|YP_003241603.1| Sigma 54 interacting domain-containing protein [Paenibacillus sp.
           Y412MC10]
 gi|261281825|gb|ACX63796.1| Sigma 54 interacting domain protein [Paenibacillus sp. Y412MC10]
          Length = 576

 Score = 42.7 bits (99), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 5/75 (6%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           R+VS         RP+T+++  GQ +    LK  + +A  +     HV+  GPPG+GKT 
Sbjct: 51  RSVSLTKPLAEKTRPQTMDDIVGQKDGLRALKAALCSANPQ-----HVIVYGPPGVGKTA 105

Query: 70  LAQVVARELGVNFRS 84
            A+VV  E   N +S
Sbjct: 106 AARVVMEEAKKNPQS 120


>gi|1706951|gb|AAB38088.1| ATPase [Sulfolobus solfataricus]
          Length = 112

 Score = 42.7 bits (99), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 29/50 (58%)

Query: 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
            GQVEA     + ++  +    A   +LFVGPPG GKT LA  +A+ELG
Sbjct: 39 LVGQVEAREASGIVVQLIRQGKMAGKGILFVGPPGTGKTALAVAIAKELG 88


>gi|297834500|ref|XP_002885132.1| EMB2083 [Arabidopsis lyrata subsp. lyrata]
 gi|297330972|gb|EFH61391.1| EMB2083 [Arabidopsis lyrata subsp. lyrata]
          Length = 874

 Score = 42.7 bits (99), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDR--DV 108
           +L  GPPG+GKT LA+ VA E GVNF S S     +      A  + AL     +    V
Sbjct: 444 ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRALYQEARENAPSV 503

Query: 109 LFIDEI 114
           +FIDE+
Sbjct: 504 VFIDEL 509


>gi|213512735|ref|NP_001134241.1| replication factor C subunit 4 [Salmo salar]
 gi|209731766|gb|ACI66752.1| Replication factor C subunit 4 [Salmo salar]
          Length = 355

 Score = 42.7 bits (99), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 5/60 (8%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          +   RP+ +EE   Q E  + LK  IE A      L ++LF GPPG GKT+     AREL
Sbjct: 35 VEKYRPKCMEEVAFQEEVVAVLKKTIEGAD-----LPNLLFYGPPGTGKTSTILAAAREL 89


>gi|148706232|gb|EDL38179.1| protease, serine, 15, isoform CRA_a [Mus musculus]
          Length = 515

 Score = 42.7 bits (99), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 89/208 (42%), Gaps = 35/208 (16%)

Query: 14  QEDADISLLRPRTL--EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTL 70
           Q D ++ L R + +  E+  G  +    +  FI  ++ R      +L F GPPG+GKT++
Sbjct: 28  QSDENLDLARAQAVLEEDHYGMEDVKKRVLEFIAVSQLRGSTQGKILCFHGPPGVGKTSI 87

Query: 71  AQVVARELGVN-FRSTSGP--------------VIAKAGDLAALLTNLEDRDVL-FIDEI 114
           A+ +AR LG   FR + G               V A  G +   L   +  + L  IDE+
Sbjct: 88  ARSIARALGREYFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLVLIDEV 147

Query: 115 HRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
            ++        S  + E+L P      LD  +        V ++LS+   I     +  +
Sbjct: 148 DKIGRGYQGDPSSALLELLDPEQNANFLDHYL-------DVPVDLSKVLFICTANVIDTI 200

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
             PL+DR  + I ++ Y  ++   I +R
Sbjct: 201 PEPLRDRMEM-INVSGYVAQEKLAIAER 227


>gi|330930220|ref|XP_003302946.1| hypothetical protein PTT_14943 [Pyrenophora teres f. teres 0-1]
 gi|311321413|gb|EFQ88982.1| hypothetical protein PTT_14943 [Pyrenophora teres f. teres 0-1]
          Length = 744

 Score = 42.7 bits (99), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 27/52 (51%)

Query: 37  CSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           C  +K   + AK    A   VL  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 499 CEPIKNPAKFAKFGISAPTGVLLWGPPGCGKTLLAKAVAAESKANFISVKGP 550



 Score = 36.2 bits (82), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 20/34 (58%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT + +  A ELGV F    GP +
Sbjct: 207 ILLHGPPGCGKTVICRAFAAELGVPFIEILGPSV 240


>gi|284163322|ref|YP_003401601.1| Replication factor C [Haloterrigena turkmenica DSM 5511]
 gi|284012977|gb|ADB58928.1| Replication factor C [Haloterrigena turkmenica DSM 5511]
          Length = 330

 Score = 42.7 bits (99), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 87/218 (39%), Gaps = 40/218 (18%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           I   RP  L+E  G       LK ++E      + L +++F GP G GKTT A  +ARE+
Sbjct: 20  IEKYRPERLDEIKGHENIVPRLKQYVER-----DELPNLMFAGPAGTGKTTAAVGIAREI 74

Query: 79  -GVNFRSTSGPVIA-----------KAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
            G ++R     + A           +  D A          ++F+DE   L+   +  L 
Sbjct: 75  YGDDWRENFLELNASDQRGIDVVRDRIKDFARSSFGGYSHRIIFLDEADALTSDAQSALR 134

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI- 185
             ME F                 N +RF L  +      + +P+Q R  +     F E+ 
Sbjct: 135 RTMEQFS----------------NNTRFIL--SCNYSSQIIDPIQSRCAV---FRFTELT 173

Query: 186 ED-LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
           ED ++  V+  A   G+ VTD+    +   + G  R A
Sbjct: 174 EDAIEAQVREIAANEGIEVTDDGVDALVYAADGDMRKA 211


>gi|260814169|ref|XP_002601788.1| hypothetical protein BRAFLDRAFT_215307 [Branchiostoma floridae]
 gi|229287090|gb|EEN57800.1| hypothetical protein BRAFLDRAFT_215307 [Branchiostoma floridae]
          Length = 538

 Score = 42.7 bits (99), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  G PG GKT LA VVA+E G+NF S  GP
Sbjct: 339 VLLYGAPGTGKTLLAGVVAKECGMNFISIKGP 370


>gi|163742883|ref|ZP_02150267.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Phaeobacter
           gallaeciensis 2.10]
 gi|161383847|gb|EDQ08232.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Phaeobacter
           gallaeciensis 2.10]
          Length = 766

 Score = 42.7 bits (99), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 72/161 (44%), Gaps = 23/161 (14%)

Query: 10  RNVSQEDADISLLRPRTLEEFT-GQVEACSNLKVFIEAAKA----RAEALDHVLFVGPPG 64
           +NVS++DA++     R+L+    GQ  A   L   I+ A+A      + + + LF GP G
Sbjct: 442 KNVSKDDAEVLKDLERSLKRVVFGQDAAIDALSSAIKLARAGLREPEKPIGNYLFAGPTG 501

Query: 65  LGKTTLAQVVARELGVNF---------------RSTSGPVIAKAGDLAALLTNLEDRD-- 107
           +GKT +A+ +A  LGV                 R    P      D   LLT+  D+   
Sbjct: 502 VGKTEVAKQLADTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGVDQHPH 561

Query: 108 -VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSV 147
            VL +DEI +    V  IL   M++ QL    G   + R+V
Sbjct: 562 CVLLLDEIEKAHPDVFNILLQVMDNGQLTDHNGRTVNFRNV 602


>gi|157692413|ref|YP_001486875.1| stage V sporulation protein K [Bacillus pumilus SAFR-032]
 gi|194014788|ref|ZP_03053405.1| stage V sporulation protein K [Bacillus pumilus ATCC 7061]
 gi|157681171|gb|ABV62315.1| stage V sporulation protein K [Bacillus pumilus SAFR-032]
 gi|194013814|gb|EDW23379.1| stage V sporulation protein K [Bacillus pumilus ATCC 7061]
          Length = 319

 Score = 42.7 bits (99), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 122/304 (40%), Gaps = 69/304 (22%)

Query: 3   DREGLLSRNVSQEDADISLLRP--RTLEEFTGQVEACSNLK-----VFI------EAAKA 49
           D E      + + +A  S+LR   R +    G  E   N+K     +F+      +  K 
Sbjct: 28  DSEAEYLEALQKNEAKHSILREIEREMNSLVGMDEMKRNIKEIYAWIFVNQKRQEQGLKV 87

Query: 50  RAEALDHVLFVGPPGLGKTTLAQVVAR-ELGVNFRSTSGPVIAKAGDLAALL---TNLED 105
             +AL H++F G PG GKTT+A++V +    +N  S    + A+ GDL       T  + 
Sbjct: 88  GKQAL-HMMFKGNPGTGKTTVARLVGKLFFEMNVLSKGHLIEAERGDLVGEYIGHTAQKT 146

Query: 106 RD--------VLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKI 149
           RD        +LFIDE + L+   E        + L   MED Q + ++     ++ +  
Sbjct: 147 RDLIKKSLGGILFIDEAYSLARGGEKDFGKEAIDTLVKHMEDKQHEFILILAGYSKEMDH 206

Query: 150 NLSRFTLIAATTRVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAA 208
            LS               NP LQ RF I I    Y ++ L  I +R         T EA 
Sbjct: 207 FLS--------------LNPGLQSRFPINISFPDYTVDQLMDIAKRMMADREYIFTQEAE 252

Query: 209 CEI-----AMRSRGTPR--IAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            ++      ++S  +P     GR +R            TI + I   A+  L +D   +D
Sbjct: 253 WKLRDYLMHIKSTTSPAKFSNGRFVRN-----------TIEKAIRTQAMRLLLVDH--YD 299

Query: 262 QLDL 265
           + DL
Sbjct: 300 KKDL 303


>gi|116089322|ref|NP_083058.2| lon protease homolog, mitochondrial precursor [Mus musculus]
 gi|118573575|sp|Q8CGK3|LONM_MOUSE RecName: Full=Lon protease homolog, mitochondrial; AltName:
           Full=Lon protease-like protein; Short=LONP; AltName:
           Full=Mitochondrial ATP-dependent protease Lon; AltName:
           Full=Serine protease 15; Flags: Precursor
 gi|74213600|dbj|BAE35606.1| unnamed protein product [Mus musculus]
 gi|162317882|gb|AAI56651.1| Lon peptidase 1, mitochondrial [synthetic construct]
          Length = 949

 Score = 42.7 bits (99), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 89/208 (42%), Gaps = 35/208 (16%)

Query: 14  QEDADISLLRPRTL--EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTL 70
           Q D ++ L R + +  E+  G  +    +  FI  ++ R      +L F GPPG+GKT++
Sbjct: 462 QSDENLDLARAQAVLEEDHYGMEDVKKRVLEFIAVSQLRGSTQGKILCFHGPPGVGKTSI 521

Query: 71  AQVVARELGVN-FRSTSGP--------------VIAKAGDLAALLTNLEDRDVL-FIDEI 114
           A+ +AR LG   FR + G               V A  G +   L   +  + L  IDE+
Sbjct: 522 ARSIARALGREYFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLVLIDEV 581

Query: 115 HRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
            ++        S  + E+L P      LD  +        V ++LS+   I     +  +
Sbjct: 582 DKIGRGYQGDPSSALLELLDPEQNANFLDHYL-------DVPVDLSKVLFICTANVIDTI 634

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
             PL+DR  + I ++ Y  ++   I +R
Sbjct: 635 PEPLRDRMEM-INVSGYVAQEKLAIAER 661


>gi|288920829|ref|ZP_06415127.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Frankia sp.
           EUN1f]
 gi|288347788|gb|EFC82067.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Frankia sp.
           EUN1f]
          Length = 431

 Score = 42.7 bits (99), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 59/133 (44%), Gaps = 35/133 (26%)

Query: 21  LLRPRTLEEF-----TGQVEACSNLKVFI---------------EAAKARAE-ALDHVLF 59
           L +PR + EF      GQ  A   L V +               +AAK+  E A  ++L 
Sbjct: 61  LPKPREIYEFLDGYVVGQEAAKKTLSVAVYNHYKRVQAGSSSSGDAAKSEVELAKSNILL 120

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDV---- 108
           +GP G GKT LAQ +AR L V F       + +AG +   + N+        D DV    
Sbjct: 121 LGPTGCGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKKAE 180

Query: 109 ---LFIDEIHRLS 118
              ++IDE+ +++
Sbjct: 181 TGIIYIDEVDKIA 193


>gi|264677388|ref|YP_003277294.1| ATP-dependent Clp protease ATP-binding subunit [Comamonas
           testosteroni CNB-2]
 gi|262207900|gb|ACY31998.1| ATP-dependent Clp protease, ATP-binding subunit [Comamonas
           testosteroni CNB-2]
          Length = 420

 Score = 42.7 bits (99), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LAQ +AR+L V F       + +AG +   + N+            
Sbjct: 116 NILLIGPTGSGKTLLAQTLARQLNVPFVMADATTLTEAGYVGEDVENIIQKLLQSCEYDV 175

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 176 ERAQRGIVYIDEIDKIS 192


>gi|221068423|ref|ZP_03544528.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Comamonas
           testosteroni KF-1]
 gi|299533086|ref|ZP_07046472.1| ATP-dependent protease ATP-binding subunit ClpX [Comamonas
           testosteroni S44]
 gi|220713446|gb|EED68814.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Comamonas
           testosteroni KF-1]
 gi|298718971|gb|EFI59942.1| ATP-dependent protease ATP-binding subunit ClpX [Comamonas
           testosteroni S44]
          Length = 420

 Score = 42.7 bits (99), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LAQ +AR+L V F       + +AG +   + N+            
Sbjct: 116 NILLIGPTGSGKTLLAQTLARQLNVPFVMADATTLTEAGYVGEDVENIIQKLLQSCEYDV 175

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 176 ERAQRGIVYIDEIDKIS 192


>gi|94968586|ref|YP_590634.1| Lon-A peptidase [Candidatus Koribacter versatilis Ellin345]
 gi|94550636|gb|ABF40560.1| ATP-dependent proteinase [Candidatus Koribacter versatilis
           Ellin345]
          Length = 798

 Score = 42.7 bits (99), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 74/162 (45%), Gaps = 33/162 (20%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           + FVGPPG+GKT+L   +A+  G  F R + G V  +A              G +  ++ 
Sbjct: 351 LCFVGPPGVGKTSLGMSIAKATGRKFVRMSLGGVRDEAEIRGHRRTYIGALPGQIIQMMK 410

Query: 102 NLEDRDVLF-IDEIHRLSI--------IVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152
               R+ +F +DE+ ++S+         + E+L P      +D  +        V+ +LS
Sbjct: 411 KAGTRNPVFMLDEVDKMSMDFRGDPSSALLEVLDPEQNFMFVDHYL-------DVEYDLS 463

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           +   +A    +  +  PLQDR  I IRL+ Y  ED K  + R
Sbjct: 464 QVFFVATANVLHTIPAPLQDRMEI-IRLHGY-TEDEKVEIGR 503


>gi|256053212|ref|XP_002570095.1| replication factor C / DNA polymerase III gamma-tau subunit
          [Schistosoma mansoni]
 gi|227287466|emb|CAY17767.1| replication factor C / DNA polymerase III gamma-tau subunit,
          putative [Schistosoma mansoni]
          Length = 362

 Score = 42.7 bits (99), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+T+ E   Q E  S L+  IE +      L ++LF GPPG GKT+L   +AR+L
Sbjct: 32 RPKTVGEVAYQTEVVSVLQRCIEGSD-----LPNLLFYGPPGTGKTSLILALARQL 82


>gi|206896312|ref|YP_002247246.1| putative cell division protease FtsH [Coprothermobacter
           proteolyticus DSM 5265]
 gi|206738929|gb|ACI18007.1| putative cell division protease FtsH [Coprothermobacter
           proteolyticus DSM 5265]
          Length = 605

 Score = 42.7 bits (99), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL VGPPG+GKT +A+ VA E GV F S SG    +   G  AA + +L ++       +
Sbjct: 201 VLLVGPPGVGKTLMAKAVAGEAGVPFFSVSGSEFVEMFVGVGAARVRDLFEQARKFAPCI 260

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 261 VFIDEI 266


>gi|168006313|ref|XP_001755854.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162693173|gb|EDQ79527.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 632

 Score = 42.7 bits (99), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 26/52 (50%)

Query: 37  CSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           C  +K   E      E    VL  GPPG GKT +A+ +A E G NF S  GP
Sbjct: 365 CRAIKFPEEYQALGMEMATGVLLYGPPGCGKTLVAKAIANEAGANFISVKGP 416



 Score = 39.7 bits (91), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 36/70 (51%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDV------ 108
           VL  GPPG GKT LA  +A E GV F   S P  V   +G+  A + +L    V      
Sbjct: 88  VLLHGPPGCGKTMLANAIAVETGVPFLKISAPEVVSGMSGESEAKVRSLFAEAVKLAPCI 147

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 148 VFIDEIDAIT 157


>gi|115443244|ref|XP_001218429.1| activator 1 subunit 3 [Aspergillus terreus NIH2624]
 gi|114188298|gb|EAU29998.1| activator 1 subunit 3 [Aspergillus terreus NIH2624]
          Length = 398

 Score = 42.7 bits (99), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 5/56 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           RP TL++ +G  +  + +  FIEA +     L H+L  GPPG GKT+    +AR++
Sbjct: 51  RPNTLDDVSGHQDILATINRFIEANR-----LPHLLLYGPPGTGKTSTILALARKI 101


>gi|74192936|dbj|BAE34972.1| unnamed protein product [Mus musculus]
          Length = 949

 Score = 42.7 bits (99), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 89/208 (42%), Gaps = 35/208 (16%)

Query: 14  QEDADISLLRPRTL--EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTL 70
           Q D ++ L R + +  E+  G  +    +  FI  ++ R      +L F GPPG+GKT++
Sbjct: 462 QSDENLDLARAQAVLEEDHYGMEDVKKRVLEFIAVSQLRGSTQGKILCFHGPPGVGKTSI 521

Query: 71  AQVVARELGVN-FRSTSGP--------------VIAKAGDLAALLTNLEDRDVL-FIDEI 114
           A+ +AR LG   FR + G               V A  G +   L   +  + L  IDE+
Sbjct: 522 ARSIARALGREYFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLVLIDEV 581

Query: 115 HRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
            ++        S  + E+L P      LD  +        V ++LS+   I     +  +
Sbjct: 582 DKIGRGYQGDPSSALLELLDPEQNANFLDHYL-------DVPVDLSKVLFICTANVIDTI 634

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
             PL+DR  + I ++ Y  ++   I +R
Sbjct: 635 PEPLRDRMEM-INVSGYVAQEKLAIAER 661


>gi|9279712|dbj|BAB01269.1| cell division protein FtsH-like [Arabidopsis thaliana]
          Length = 976

 Score = 42.7 bits (99), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDR--DV 108
           +L  GPPG+GKT LA+ VA E GVNF S S     +      A  + AL     +    V
Sbjct: 546 ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRALYQEARENAPSV 605

Query: 109 LFIDEI 114
           +FIDE+
Sbjct: 606 VFIDEL 611


>gi|225436731|ref|XP_002269370.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 941

 Score = 42.7 bits (99), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E  +NF S  GP
Sbjct: 692 VLLYGPPGTGKTLLAKAVATECSLNFLSVKGP 723


>gi|217077772|ref|YP_002335490.1| DNA polymerase III, gamma and tau subunit [Thermosipho africanus
           TCF52B]
 gi|217037627|gb|ACJ76149.1| DNA polymerase III, gamma and tau subunit [Thermosipho africanus
           TCF52B]
          Length = 480

 Score = 42.7 bits (99), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 90/229 (39%), Gaps = 37/229 (16%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+   E  GQ    +++K     +    E     +F GP G GKTT+A+++A+ L  N 
Sbjct: 9   RPKLFSEVVGQ----NHVKTLFLNSLKNGEISHAYIFAGPRGTGKTTVARILAKSL--NC 62

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLF--------IDEIHRLS--------------II 120
            + +G       +    + N    DVL         IDEI ++                I
Sbjct: 63  ENKNGVEPCNKCNTCQSIDNGSFMDVLEIDAASNRGIDEIRKIRETVGYHAAQGNYKVYI 122

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           ++E+     E F   L   E P +  V         I ATT    +   +  R  + I  
Sbjct: 123 IDEVHMLTKEAFNALLKTLEEPPSNVV--------FILATTNPEKIPQTIISRCQV-IDF 173

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
               IED+   ++   K   + ++ EA  EIA R+ G  R A  +L +V
Sbjct: 174 KNLTIEDIIKRLEFVCKKENINISQEALNEIAKRANGGMRDALTILEQV 222


>gi|294659268|ref|XP_461623.2| DEHA2G01892p [Debaryomyces hansenii CBS767]
 gi|300681246|sp|Q6BJJ8|LONP2_DEBHA RecName: Full=Lon protease homolog 2, peroxisomal
 gi|199433831|emb|CAG90071.2| DEHA2G01892p [Debaryomyces hansenii]
          Length = 1147

 Score = 42.7 bits (99), Expect = 0.075,   Method: Composition-based stats.
 Identities = 40/168 (23%), Positives = 69/168 (41%), Gaps = 38/168 (22%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD----------------LAALL 100
           ++ VGPPG GKT+LA+ +A+ LG NF+  S   I    +                + +L 
Sbjct: 647 IMLVGPPGTGKTSLAKSIAKSLGRNFQRVSLGGIKDESEIRGHRRTYVGAMPGVIIQSLR 706

Query: 101 TNLEDRDVLFIDEIHRL--------------SIIVEEILYPAMEDFQLDLMVGEGPSARS 146
            +     V+ +DEI ++              S  + E+L P      +D  +G       
Sbjct: 707 KSRSMNPVILLDEIDKIIGGNNGVNKFNGDPSAALLEVLDPEQNTSFIDHYLG------- 759

Query: 147 VKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
             ++LS+   I        L+ PL DR  + I +  Y+ ++   I +R
Sbjct: 760 FPVDLSQVMFICTANEASNLSRPLLDRLEM-IEVGAYDYDEKLVIGER 806


>gi|54022793|ref|YP_117035.1| hypothetical protein nfa8260 [Nocardia farcinica IFM 10152]
 gi|54014301|dbj|BAD55671.1| hypothetical protein [Nocardia farcinica IFM 10152]
          Length = 613

 Score = 42.7 bits (99), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 47/136 (34%), Positives = 58/136 (42%), Gaps = 32/136 (23%)

Query: 10  RNVSQED--------ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEAL------- 54
           RN   ED        A   L R   LE    QV   + L+   + AK RAE         
Sbjct: 300 RNADAEDRAKKILAEARAELDRQIGLESVKTQV---AKLQATAQLAKIRAEKGMASVPRG 356

Query: 55  DHVLFVGPPGLGKTTLAQVVAR-ELGVNFRSTSGPVIAKAGDLAA------------LLT 101
           +H+ F GPPG GKTT+A+VVA+   GV    T   V AK  D               L+ 
Sbjct: 357 NHLAFTGPPGTGKTTIARVVAKIYCGVGLLKTDKVVEAKRMDFVGQHLGSTAIKTDKLID 416

Query: 102 NLEDRDVLFIDEIHRL 117
           +  D  VLFIDE + L
Sbjct: 417 SAMD-GVLFIDEAYTL 431


>gi|19173766|ref|NP_596895.1| lon protease homolog, mitochondrial precursor [Rattus norvegicus]
 gi|81916424|sp|Q924S5|LONM_RAT RecName: Full=Lon protease homolog, mitochondrial; AltName:
           Full=Lon protease-like protein; Short=LONP; AltName:
           Full=Mitochondrial ATP-dependent protease Lon; AltName:
           Full=Serine protease 15; Flags: Precursor
 gi|15076622|dbj|BAB62423.1| Lon [Rattus norvegicus]
 gi|149028183|gb|EDL83621.1| protease, serine, 15 [Rattus norvegicus]
          Length = 950

 Score = 42.7 bits (99), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 90/208 (43%), Gaps = 35/208 (16%)

Query: 14  QEDADISLLRPRTL--EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTL 70
           Q D ++ L R +++  E+  G  +    +  FI  ++ R      +L F GPPG+GKT++
Sbjct: 463 QSDENLDLARAQSVLEEDHYGMEDVKKRVLEFIAVSQLRGSTQGKILCFHGPPGVGKTSI 522

Query: 71  AQVVARELGVN-FRSTSGP--------------VIAKAGDLAALLTNLEDRD-VLFIDEI 114
           A+ +AR LG   FR + G               V A  G +   L   +  + ++ IDE+
Sbjct: 523 ARSIARALGREYFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLVLIDEV 582

Query: 115 HRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
            ++        S  + E+L P      LD  +        V ++LS+   I        +
Sbjct: 583 DKIGRGYQGDPSSALLELLDPEQNANFLDHYL-------DVPVDLSKVLFICTANVTDTI 635

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
             PL+DR  + I ++ Y  ++   I +R
Sbjct: 636 PEPLRDRMEM-INVSGYVAQEKLAIAER 662


>gi|71656057|ref|XP_816581.1| vesicular transport protein (CDC48 homologue) [Trypanosoma cruzi
           strain CL Brener]
 gi|70881720|gb|EAN94730.1| vesicular transport protein (CDC48 homologue), putative
           [Trypanosoma cruzi]
          Length = 663

 Score = 42.7 bits (99), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 20/39 (51%), Positives = 24/39 (61%), Gaps = 3/39 (7%)

Query: 53  ALDH---VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
            LDH   VL  GPPG GKT +A+ +A + G NF S  GP
Sbjct: 400 GLDHPVGVLLYGPPGCGKTLVAKAIANQSGANFISIKGP 438


>gi|67471882|ref|XP_651853.1| ruvB-like DNA helicase [Entamoeba histolytica HM-1:IMSS]
 gi|56468632|gb|EAL46463.1| ruvB-like DNA helicase, putative [Entamoeba histolytica
          HM-1:IMSS]
          Length = 439

 Score = 42.7 bits (99), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 33/60 (55%), Gaps = 2/60 (3%)

Query: 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG--VNFRSTSG 87
            GQ  A   L + +E  KA+  A   +L  G PG GKT LAQ +A+ELG  V FR+  G
Sbjct: 39 LVGQENAREALGLIVEMVKAKRMAGRAILLAGAPGTGKTALAQALAKELGEHVPFRAMVG 98


>gi|298708657|emb|CBJ26144.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 966

 Score = 42.7 bits (99), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ +A E G NF S  GP
Sbjct: 696 VLLYGPPGCGKTLLAKAIANESGANFISVKGP 727


>gi|240103779|ref|YP_002960088.1| AAA family ATPase, CDC48 subfamily (Cdc48) [Thermococcus
           gammatolerans EJ3]
 gi|239911333|gb|ACS34224.1| AAA family ATPase, CDC48 subfamily (Cdc48) [Thermococcus
           gammatolerans EJ3]
          Length = 838

 Score = 42.7 bits (99), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 16/116 (13%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
           T E+  G  +A   ++  +E      E  +         VL  GPPG GKT LA+ VA E
Sbjct: 209 TYEDIGGLSDAIQKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANE 268

Query: 78  LGVNFRSTSGPVIAKA--GD----LAALLTNLEDR--DVLFIDEIHRLSIIVEEIL 125
              +F + +GP I     G+    L  +    E+    ++FIDEI  ++   EE++
Sbjct: 269 ANAHFIAINGPEIMSKFYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVV 324



 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 18/75 (24%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR---------- 106
           +L  GPPG GKT LA+ VA E   NF +  GP +     L+  +   E R          
Sbjct: 583 ILLYGPPGTGKTLLAKAVANESEANFIAIRGPEV-----LSKWVGETEKRIREIFRKARQ 637

Query: 107 ---DVLFIDEIHRLS 118
               V+FIDEI  ++
Sbjct: 638 AAPTVVFIDEIDAIA 652


>gi|255559284|ref|XP_002520662.1| peroxisome assembly factor-2, putative [Ricinus communis]
 gi|223540047|gb|EEF41624.1| peroxisome assembly factor-2, putative [Ricinus communis]
          Length = 920

 Score = 42.7 bits (99), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E  +NF S  GP
Sbjct: 684 VLLYGPPGTGKTLLAKAVATECSLNFLSVKGP 715


>gi|195977170|ref|YP_002122414.1| cell division protein FtsH-like [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|195973875|gb|ACG61401.1| cell division protein FtsH-like [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 639

 Score = 42.7 bits (99), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLE--DRDV 108
           VL  GPPG GKT LA+ VA E GV F S SG       V   A  + +L  + +  +R +
Sbjct: 205 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRSLFEDAKKAERAI 264

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 265 IFIDEI 270


>gi|108758871|ref|YP_630990.1| AAA family ATPase [Myxococcus xanthus DK 1622]
 gi|108462751|gb|ABF87936.1| ATPase, AAA family [Myxococcus xanthus DK 1622]
          Length = 711

 Score = 42.7 bits (99), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 26/46 (56%)

Query: 45  EAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           E A+A+      VL  GPPG GKT +A+  A E  VNF S  GP +
Sbjct: 484 EFARAKVRPPKGVLLSGPPGCGKTLMAKAAAHESQVNFISVKGPAL 529



 Score = 40.0 bits (92), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DV 108
           VL  GPPG GKT +A+ VA E    F + +GP I     G+  A L  + D        +
Sbjct: 223 VLLYGPPGCGKTLIARAVAHETAAAFFTITGPEIMHKFYGESEAHLRQIFDEAQRRAPAI 282

Query: 109 LFIDEI 114
           +F+DEI
Sbjct: 283 IFVDEI 288


>gi|114567169|ref|YP_754323.1| endopeptidase La [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114338104|gb|ABI68952.1| Endopeptidase La [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 566

 Score = 42.7 bits (99), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 8/108 (7%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           RN+   +   SL RP  +++  GQ EA S L+  +     +     HV+  GPPG+GKT 
Sbjct: 56  RNIKLSEPLSSLTRPAQMDDIIGQKEAVSILRSALCGPNPQ-----HVIIFGPPGVGKTA 110

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVL--FIDEIH 115
            A++V  E   N  S  G   A   ++ A ++  ++R++    I  +H
Sbjct: 111 AARLVLEEAKKNPLSPFGK-DANFVEVDATISRFDERNIADPLIGSVH 157


>gi|70985298|ref|XP_748155.1| DNA replication factor C subunit Rfc3 [Aspergillus fumigatus Af293]
 gi|66845783|gb|EAL86117.1| DNA replication factor C subunit Rfc3, putative [Aspergillus
           fumigatus Af293]
 gi|159125922|gb|EDP51038.1| DNA replication factor C subunit Rfc3, putative [Aspergillus
           fumigatus A1163]
          Length = 396

 Score = 42.7 bits (99), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 5/56 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           RP TL++ +G  +  + +  FIEA +     L H+L  GPPG GKT+    +AR +
Sbjct: 52  RPNTLDDVSGHQDILATINKFIEANR-----LPHLLLYGPPGTGKTSTILALARRI 102


>gi|163847597|ref|YP_001635641.1| ATP-dependent metalloprotease FtsH [Chloroflexus aurantiacus
           J-10-fl]
 gi|222525452|ref|YP_002569923.1| ATP-dependent metalloprotease FtsH [Chloroflexus sp. Y-400-fl]
 gi|163668886|gb|ABY35252.1| ATP-dependent metalloprotease FtsH [Chloroflexus aurantiacus
           J-10-fl]
 gi|222449331|gb|ACM53597.1| ATP-dependent metalloprotease FtsH [Chloroflexus sp. Y-400-fl]
          Length = 654

 Score = 42.7 bits (99), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 52/104 (50%), Gaps = 15/104 (14%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAK--ARAEALDH-----VLFVGPPGLGKTTLAQVVAREL 78
           T  +  GQ EA  +L   +E  K   +  AL       VL VGPPG GKT L++ VA E 
Sbjct: 167 TFADVAGQEEAKQDLAEIVEFLKFPDKFAALGARIPRGVLMVGPPGTGKTLLSRAVAGEA 226

Query: 79  GVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEI 114
           GV F S SG    +   G  A+ + +L D+       ++FIDEI
Sbjct: 227 GVPFFSISGSEFVEMFVGVGASRVRDLFDQAKRNAPCIVFIDEI 270


>gi|329923475|ref|ZP_08278956.1| ATP-dependent protease LonB [Paenibacillus sp. HGF5]
 gi|328941275|gb|EGG37570.1| ATP-dependent protease LonB [Paenibacillus sp. HGF5]
          Length = 576

 Score = 42.7 bits (99), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 5/62 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T+++  GQ +    LK  + +A  +     HV+  GPPG+GKT  A+VV  E   N 
Sbjct: 64  RPQTMDDIVGQKDGLRALKAALCSANPQ-----HVIVYGPPGVGKTAAARVVMEEAKKNP 118

Query: 83  RS 84
           +S
Sbjct: 119 QS 120


>gi|328956579|ref|YP_004373965.1| ATP-dependent zinc metalloprotease FtsH [Carnobacterium sp. 17-4]
 gi|328672903|gb|AEB28949.1| ATP-dependent zinc metalloprotease FtsH [Carnobacterium sp. 17-4]
          Length = 721

 Score = 42.7 bits (99), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 97/223 (43%), Gaps = 39/223 (17%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108
           VL  GPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 226 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFENAKKTAPAI 285

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN-----LSRFT------LI 157
           +FIDEI  +               Q    +G G   R   +N     +  F+      +I
Sbjct: 286 IFIDEIDAVG-------------RQRGAGMGGGHDEREQTLNQLLVEMDGFSGNEGVIVI 332

Query: 158 AATTRVGLLTNPL--QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRS 215
           AAT R  +L   L    RF   I +   +++  + I++  +K   LA    +  ++A+ +
Sbjct: 333 AATNRSDVLDPALLRPGRFDRQILVGHPDVKGREAILKVHSKNKPLA----SDVDLAVVA 388

Query: 216 RGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKM 258
           R TP  +G  L  V + A +  A+   +EI DA  L  A D++
Sbjct: 389 RQTPGFSGADLENVLNEAALVAARRNKKEI-DALDLDEAQDRV 430


>gi|224044897|ref|XP_002194546.1| PREDICTED: hypothetical protein [Taeniopygia guttata]
          Length = 1279

 Score = 42.7 bits (99), Expect = 0.076,   Method: Composition-based stats.
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  G PG GKT LA V+ARE G+NF S  GP
Sbjct: 873 VLLYGAPGTGKTLLAGVIARESGMNFISIKGP 904


>gi|171687307|ref|XP_001908594.1| hypothetical protein [Podospora anserina S mat+]
 gi|170943615|emb|CAP69267.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1354

 Score = 42.7 bits (99), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 22/32 (68%)

Query: 57   VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
            +LF GPPG GKT LA+ +A E  +NF S  GP
Sbjct: 989  ILFYGPPGTGKTLLAKAIATEYSLNFFSVKGP 1020


>gi|119953564|ref|YP_945774.1| cell division protein FtsH [Borrelia turicatae 91E135]
 gi|119862335|gb|AAX18103.1| cell division protein FtsH [Borrelia turicatae 91E135]
          Length = 635

 Score = 42.7 bits (99), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 36/69 (52%), Gaps = 7/69 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAK--ARAEAL-----DHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ EA   L+  +E  K   + E +       VL VG PG GKT LA+ VA E 
Sbjct: 171 TFKDVAGQEEAKQELREVVEFLKNPKKFEKIGARIPKGVLLVGSPGTGKTLLAKAVAGEA 230

Query: 79  GVNFRSTSG 87
           GVNF   SG
Sbjct: 231 GVNFFHMSG 239


>gi|147780708|emb|CAN69109.1| hypothetical protein VITISV_025716 [Vitis vinifera]
          Length = 1241

 Score = 42.7 bits (99), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 21/32 (65%)

Query: 57   VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
            VL  GPPG GKT LA+ VA E  +NF S  GP
Sbjct: 1008 VLLYGPPGTGKTLLAKAVATECSLNFLSVKGP 1039


>gi|148244364|ref|YP_001219058.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus
           Vesicomyosocius okutanii HA]
 gi|146326191|dbj|BAF61334.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Candidatus
           Vesicomyosocius okutanii HA]
          Length = 431

 Score = 42.7 bits (99), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +AR L + F       + +AG    D+  ++ NL        
Sbjct: 119 NILMIGPTGSGKTLLAQTLARILDIPFTVADATTLTEAGYVGDDVENVVKNLLSKCDFDP 178

Query: 104 --EDRDVLFIDEIHRLS 118
               R ++FIDEI ++S
Sbjct: 179 DRAQRGIIFIDEIDKIS 195


>gi|70606665|ref|YP_255535.1| hypothetical protein Saci_0877 [Sulfolobus acidocaldarius DSM 639]
 gi|30088860|gb|AAP13476.1| AAA family ATPase [Sulfolobus acidocaldarius]
 gi|68567313|gb|AAY80242.1| hypothetical protein Saci_0877 [Sulfolobus acidocaldarius DSM 639]
          Length = 591

 Score = 42.7 bits (99), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 8/77 (10%)

Query: 46  AAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA-----KAGDLAALL 100
           A K   + +  +L  GPPG GKT++A+ +A EL  +F   SG  I+     KAG+L A  
Sbjct: 358 ANKLGIKPVKGILLYGPPGTGKTSIAKALANELQASFIVVSGDEISSVGPFKAGELIAEK 417

Query: 101 TNLEDRD---VLFIDEI 114
            ++   +   ++FIDEI
Sbjct: 418 FHIAKDNSPSIIFIDEI 434


>gi|327274776|ref|XP_003222152.1| PREDICTED: peroxisome biogenesis factor 1-like [Anolis
           carolinensis]
          Length = 1276

 Score = 42.7 bits (99), Expect = 0.077,   Method: Composition-based stats.
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  G PG GKT LA VVARE G+NF S  GP
Sbjct: 871 ILLYGAPGTGKTLLAGVVARESGMNFISIKGP 902


>gi|294463363|gb|ADE77215.1| unknown [Picea sitchensis]
          Length = 442

 Score = 42.7 bits (99), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 55/127 (43%), Gaps = 23/127 (18%)

Query: 20  SLLRPRTLE-------EFTGQVEACSNLKVFIEAAKARAEAL----DH----VLFVGPPG 64
           S +R  TLE       +  GQ E    LK  +E  +    A      H    VL  GPPG
Sbjct: 156 SAMREVTLEIPKVCWSDIGGQAEVKQQLKEAVEWPQKYQHAFLRIGTHPPRGVLMFGPPG 215

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DVLFIDEIHR 116
             KT +A+ VA E G+NF +  GP +     G+    + +L  +       ++F DEI  
Sbjct: 216 CSKTIMARAVASEAGLNFLAVKGPELFSKWVGESEKAIQSLFAKARAAAPSIIFFDEIDG 275

Query: 117 LSIIVEE 123
           L++  E 
Sbjct: 276 LAVAREH 282


>gi|254798632|ref|YP_003058284.1| cell division protein [Parachlorella kessleri]
 gi|229915580|gb|ACQ90923.1| cell division protein [Parachlorella kessleri]
          Length = 1481

 Score = 42.7 bits (99), Expect = 0.077,   Method: Composition-based stats.
 Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 8/101 (7%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL---EDRD----VL 109
           +L +GPPG GKT L Q +A E  V     SG  +   G+  A+       E R     ++
Sbjct: 822 LLLIGPPGTGKTVLVQALAGEAQVPVLVLSGSSLISPGESGAVKLEFLFQEARQLAPCIV 881

Query: 110 FIDEIHRLSIIVEEILY-PAMEDFQLDLMVGEGPSARSVKI 149
           FIDEI  L++  ++++  P   D  L  +V    S R+ K+
Sbjct: 882 FIDEIDTLALKRQDVMQNPMGGDEVLSALVSFSSSKRNGKV 922


>gi|325968824|ref|YP_004245016.1| TBP-interacting protein TIP49 [Vulcanisaeta moutnovskia 768-28]
 gi|323708027|gb|ADY01514.1| TBP-interacting protein TIP49 [Vulcanisaeta moutnovskia 768-28]
          Length = 451

 Score = 42.7 bits (99), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 28/50 (56%)

Query: 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
          F GQVEA       ++  +A       VL VGPPG GKT LA  +ARELG
Sbjct: 39 FVGQVEAREAAYYVVKMIRAGKFGGKGVLIVGPPGTGKTALAIGIARELG 88


>gi|304440585|ref|ZP_07400470.1| cell division protein FtsH [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304370927|gb|EFM24548.1| cell division protein FtsH [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 593

 Score = 42.7 bits (99), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 47/104 (45%), Gaps = 15/104 (14%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78
           T +   GQ EA   LK  ++   +  +  D         L VGPPG GKT LAQ VA E 
Sbjct: 150 TFDNVEGQDEAKEALKELVDFLHSPKKYTDIGAKLPKGALLVGPPGTGKTLLAQAVAGEA 209

Query: 79  GVNFRSTSGPVIAK------AGDLAALLTNLEDRD--VLFIDEI 114
            V F S SG    +      A  +  L    +++   ++FIDEI
Sbjct: 210 NVPFFSISGSEFVEMFVGLGAAKVRDLFKQAQEKAPCIVFIDEI 253


>gi|288929194|ref|ZP_06423039.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Prevotella
           sp. oral taxon 317 str. F0108]
 gi|288329296|gb|EFC67882.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Prevotella
           sp. oral taxon 317 str. F0108]
          Length = 753

 Score = 42.7 bits (99), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 62/148 (41%), Gaps = 22/148 (14%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKA----RAEALDHVLFVGPPGLGKTTLAQVVARE 77
           L  R  E   GQ +A   +   I+ AKA      + L  +LFVGP G+GKT +A+V+A E
Sbjct: 448 LEKRMKELIYGQNQAVELVTQAIQTAKAGLTEEGKPLAAMLFVGPTGVGKTEVARVLATE 507

Query: 78  LGVNF------RSTSGPVIAKAGDLAALLTNLED------------RDVLFIDEIHRLSI 119
           LG+          T    +AK     A     ED              VL +DEI +   
Sbjct: 508 LGIELVRFDMSEYTEKHAVAKLIGSPAGYVGYEDGGLLTDAIRKTPNCVLLLDEIEKAHA 567

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSV 147
            +  IL   M+  +L    G+    R+V
Sbjct: 568 DIYNILLQVMDYARLTDNKGQKADFRNV 595


>gi|296086606|emb|CBI32241.3| unnamed protein product [Vitis vinifera]
          Length = 938

 Score = 42.7 bits (99), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E  +NF S  GP
Sbjct: 692 VLLYGPPGTGKTLLAKAVATECSLNFLSVKGP 723


>gi|224131204|ref|XP_002321026.1| predicted protein [Populus trichocarpa]
 gi|222861799|gb|EEE99341.1| predicted protein [Populus trichocarpa]
          Length = 930

 Score = 42.7 bits (99), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E  +NF S  GP
Sbjct: 685 VLLYGPPGTGKTLLAKAVATECSLNFLSVKGP 716


>gi|254172418|ref|ZP_04879093.1| AAA family ATPase, CDC48 subfamily [Thermococcus sp. AM4]
 gi|214033347|gb|EEB74174.1| AAA family ATPase, CDC48 subfamily [Thermococcus sp. AM4]
          Length = 838

 Score = 42.7 bits (99), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 16/116 (13%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
           T E+  G  +A   ++  +E      E  +         VL  GPPG GKT LA+ VA E
Sbjct: 209 TYEDIGGLSDAIQKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANE 268

Query: 78  LGVNFRSTSGPVIAKA--GD----LAALLTNLEDR--DVLFIDEIHRLSIIVEEIL 125
              +F + +GP I     G+    L  +    E+    ++FIDEI  ++   EE++
Sbjct: 269 ANAHFIAINGPEIMSKFYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVV 324



 Score = 38.5 bits (88), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 18/75 (24%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR---------- 106
           +L  GPPG GKT LA+ VA E   NF +  GP +     L+  +   E R          
Sbjct: 583 ILLYGPPGTGKTLLAKAVANESEANFIAIRGPEV-----LSKWVGETEKRIREIFRKARQ 637

Query: 107 ---DVLFIDEIHRLS 118
               V+FIDEI  ++
Sbjct: 638 AAPTVVFIDEIDAIA 652


>gi|85860155|ref|YP_462357.1| ATP-dependent protease La [Syntrophus aciditrophicus SB]
 gi|123517201|sp|Q2LVS9|LON_SYNAS RecName: Full=Lon protease; AltName: Full=ATP-dependent protease La
 gi|85723246|gb|ABC78189.1| ATP-dependent protease La [Syntrophus aciditrophicus SB]
          Length = 790

 Score = 42.7 bits (99), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 1/75 (1%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLA 71
           +Q++ DI   R    E+  G  +A   +  ++   K + +    +L FVGPPG GKT+LA
Sbjct: 323 TQDNQDIRQARRILDEDHYGLDKAKKRIIEYLAVRKLKPDTKGPILCFVGPPGTGKTSLA 382

Query: 72  QVVARELGVNFRSTS 86
           Q +AR LG  F   S
Sbjct: 383 QSIARALGRKFYRIS 397


>gi|57640604|ref|YP_183082.1| cell division protein CDC48 [Thermococcus kodakarensis KOD1]
 gi|6513847|dbj|BAA87866.1| Pk-cdcA [Thermococcus kodakaraensis]
 gi|57158928|dbj|BAD84858.1| CDC48/VCP homolog, AAA superfamily [Thermococcus kodakarensis KOD1]
          Length = 835

 Score = 42.7 bits (99), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 16/116 (13%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
           T E+  G  +A   ++  +E      E  +         VL  GPPG GKT LA+ VA E
Sbjct: 207 TYEDIGGLSDAIQKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANE 266

Query: 78  LGVNFRSTSGPVIAKA--GD----LAALLTNLEDR--DVLFIDEIHRLSIIVEEIL 125
              +F + +GP I     G+    L  +    E+    ++FIDEI  ++   EE++
Sbjct: 267 ANAHFIAINGPEIMSKFYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVV 322



 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 18/75 (24%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR---------- 106
           +L  GPPG GKT LA+ VA E   NF +  GP +     L+  +   E R          
Sbjct: 581 ILLYGPPGTGKTLLAKAVANESQANFIAIRGPEV-----LSKWVGETEKRIREIFRKARQ 635

Query: 107 ---DVLFIDEIHRLS 118
               V+FIDEI  ++
Sbjct: 636 AAPTVVFIDEIDAIA 650


>gi|328873528|gb|EGG21895.1| replication factor C subunit [Dictyostelium fasciculatum]
          Length = 1578

 Score = 42.7 bits (99), Expect = 0.078,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 2/85 (2%)

Query: 23   RPRTLEEFTGQVEACSNLKVFIEA--AKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            +P T  +  G     S+LK F+       R   L+ VL  GPPG+GKTT A ++ +E+G 
Sbjct: 1029 KPTTSSDIIGNPGMISHLKEFLMDFDKPLRKYKLNAVLIAGPPGIGKTTCASMILKEMGY 1088

Query: 81   NFRSTSGPVIAKAGDLAALLTNLED 105
            +    +        D+  LL  + D
Sbjct: 1089 DVIEMNASDTRSKNDIDHLLGGVSD 1113


>gi|320164406|gb|EFW41305.1| katanin 60-PA [Capsaspora owczarzaki ATCC 30864]
          Length = 351

 Score = 42.7 bits (99), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 33/66 (50%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DV 108
           VL VGPPG GKT LA+ VA E G  F + S   +     GD   L+  L D         
Sbjct: 105 VLMVGPPGTGKTMLAKAVATECGTTFFNVSASTLTSKYRGDSEKLVRLLFDMARFYAPST 164

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 165 IFIDEI 170


>gi|294055281|ref|YP_003548939.1| ATP-dependent metalloprotease FtsH [Coraliomargarita akajimensis
           DSM 45221]
 gi|293614614|gb|ADE54769.1| ATP-dependent metalloprotease FtsH [Coraliomargarita akajimensis
           DSM 45221]
          Length = 683

 Score = 42.7 bits (99), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 98/225 (43%), Gaps = 39/225 (17%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL VGPPG GKT LA+ VA E  V F S SG    +   G  AA + ++ ++       +
Sbjct: 229 VLMVGPPGTGKTLLAKAVAGEADVPFFSISGSDFVEMFVGVGAARVRDMFEQGRKNAPCI 288

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN-----LSRFT------LI 157
           +FIDEI  +               Q    +G G   R   +N     +  F       +I
Sbjct: 289 VFIDEIDAVG-------------RQRGAGLGGGNDEREQTLNSLLVEMDGFDGHEGVIII 335

Query: 158 AATTRVGLLTNPL--QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRS 215
           AAT R  +L N L    RF   + ++  ++     I+Q  AK   +A+++E   E    +
Sbjct: 336 AATNRPDVLDNALLRPGRFDRQVTIDLPDLNGRHEILQVHAK--KIALSEEVNLEHV--A 391

Query: 216 RGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGF 260
           R TP  +G  L  + +   +  A+   +++ D   +  A DK+ F
Sbjct: 392 RNTPGFSGADLANLLNEGALIAAR-YNKKVVDMQDIDEARDKISF 435


>gi|196010307|ref|XP_002115018.1| hypothetical protein TRIADDRAFT_28707 [Trichoplax adhaerens]
 gi|190582401|gb|EDV22474.1| hypothetical protein TRIADDRAFT_28707 [Trichoplax adhaerens]
          Length = 315

 Score = 42.7 bits (99), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 5/60 (8%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          I   RP+ L+E  G  +  S L+VF     A+   L +++  GPPG GKTT    +AR+L
Sbjct: 1  IEKYRPKQLDEVVGNEDTISRLEVF-----AKEGNLPNIVIAGPPGTGKTTSILCIARQL 55


>gi|120404041|ref|YP_953870.1| ATPase central domain-containing protein [Mycobacterium vanbaalenii
           PYR-1]
 gi|119956859|gb|ABM13864.1| AAA ATPase, central domain protein [Mycobacterium vanbaalenii
           PYR-1]
          Length = 440

 Score = 42.7 bits (99), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 7/69 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-----RSTSGPVIAKAGDLAALLTNLEDRD--VL 109
           V+  GPPG GKT+ A+ VA  LG  F        + P +A    L  + TNL + D  V+
Sbjct: 215 VILFGPPGTGKTSFAKAVAGRLGWPFVEIFPSRLATPDVAMPTALREVFTNLNELDAAVV 274

Query: 110 FIDEIHRLS 118
           FIDE+  ++
Sbjct: 275 FIDEVEEIA 283


>gi|42525081|ref|NP_970461.1| ATP-dependent protease ATP-binding subunit [Bdellovibrio
           bacteriovorus HD100]
 gi|61211515|sp|Q6MH12|CLPX_BDEBA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|39577292|emb|CAE81115.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bdellovibrio
           bacteriovorus HD100]
          Length = 431

 Score = 42.7 bits (99), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 51/114 (44%), Gaps = 27/114 (23%)

Query: 32  GQVEACSNLKVFIEAAKARAEALD-------------HVLFVGPPGLGKTTLAQVVAREL 78
           GQ +A   L V +     R  A+              ++L +GP G GKT LAQ +A+ L
Sbjct: 77  GQTQAKKTLAVAVHNHYKRVNAMSGGKKSADVEMQKSNILLIGPTGSGKTLLAQTIAKVL 136

Query: 79  GVNFRSTSGPVIAKAG----DLAALLTNL---EDRD-------VLFIDEIHRLS 118
            V F       + +AG    D+  ++ NL    D D       V+++DEI ++S
Sbjct: 137 NVPFAMADATTLTEAGYVGEDVENVVLNLLQASDYDVEKAQKGVIYVDEIDKIS 190


>gi|322819429|gb|EFZ26555.1| vesicular transport-like protein, putative [Trypanosoma cruzi]
          Length = 660

 Score = 42.7 bits (99), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 20/39 (51%), Positives = 24/39 (61%), Gaps = 3/39 (7%)

Query: 53  ALDH---VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
            LDH   VL  GPPG GKT +A+ +A + G NF S  GP
Sbjct: 397 GLDHPVGVLLYGPPGCGKTLVAKAIANQSGANFISIKGP 435


>gi|313889508|ref|ZP_07823154.1| ATP-dependent metallopeptidase HflB [Streptococcus pseudoporcinus
           SPIN 20026]
 gi|313122120|gb|EFR45213.1| ATP-dependent metallopeptidase HflB [Streptococcus pseudoporcinus
           SPIN 20026]
          Length = 658

 Score = 42.7 bits (99), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLE--DRDV 108
           VL  GPPG GKT LA+ VA E GV F S SG       V   A  + +L  + +  +R +
Sbjct: 223 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRSLFEDAKKAERAI 282

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 283 IFIDEI 288


>gi|147676533|ref|YP_001210748.1| ATP-dependent Zn proteases [Pelotomaculum thermopropionicum SI]
 gi|146272630|dbj|BAF58379.1| ATP-dependent Zn proteases [Pelotomaculum thermopropionicum SI]
          Length = 609

 Score = 42.7 bits (99), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 47/95 (49%), Gaps = 11/95 (11%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           EE    VE   N K F E     A+    VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 168 EELEEIVEFLKNPKKFQELG---AKIPKGVLLFGPPGTGKTLLARAVAGEAGVPFFSISG 224

Query: 88  PVIAK--AGDLAALLTNLEDRD------VLFIDEI 114
               +   G  A+ + +L D+       ++F+DEI
Sbjct: 225 SDFVEMFVGVGASRVRDLFDQAKKNSPCIVFVDEI 259


>gi|50291931|ref|XP_448398.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49527710|emb|CAG61359.1| unnamed protein product [Candida glabrata]
          Length = 359

 Score = 42.7 bits (99), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 84/197 (42%), Gaps = 18/197 (9%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--------AKAGDLAALLTNLEDRDV 108
           VL  GPPG GKT LA+ +A+E G NF S     I         K  D    L N  +  +
Sbjct: 129 VLLYGPPGCGKTMLAKALAKESGANFISVRMSTIMDKWYGESNKIVDAMFSLANKLEPCI 188

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLM-VGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           +FIDEI           +    + + + M + +G       +N  R  +I AT R+  + 
Sbjct: 189 IFIDEIDSFLRERSSTDHEVTANLKAEFMTLWDG------LLNNGRVMIIGATNRINDID 242

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
           +    R      ++   IE    I++    L G    D+A  ++++ ++ +  ++G  L+
Sbjct: 243 DAFLRRLPKRFLVSLPNIEQRTKILEV---LLGNTELDKANFDLSLIAKCSGGLSGSDLK 299

Query: 228 RVRDFAEVAHAKTITRE 244
            +   A +  AK   +E
Sbjct: 300 ELCREAALNAAKEAMKE 316


>gi|68476997|ref|XP_717476.1| hypothetical protein CaO19.8154 [Candida albicans SC5314]
 gi|46439189|gb|EAK98510.1| hypothetical protein CaO19.8154 [Candida albicans SC5314]
          Length = 969

 Score = 42.7 bits (99), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 74/189 (39%), Gaps = 38/189 (20%)

Query: 43  FIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNF-----------RSTSGP-- 88
           FI   K        +L   GPPG GKT++A+ +A  L   +               G   
Sbjct: 420 FISVGKISGNVDGKILCLAGPPGTGKTSIAKSIAEALNRKYTRIAVGGVQDVHDVKGHRR 479

Query: 89  --VIAKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVE--------EILYPAMEDFQLDLM 137
             V +  G +   LT  +  + ++ IDEI +L             EIL P   +  +D  
Sbjct: 480 TYVASIPGRIVTALTQAKTSNPLMLIDEIDKLDTTSHGGAARAFLEILDPEQNNSFVDNF 539

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR--- 194
           +        VK++LS+   +     +G +  PL+DR  I I +N Y   D   I +R   
Sbjct: 540 I-------EVKVDLSKVLFVCTANYLGSIPGPLRDRMEI-IEVNGYTKNDKIEITKRHLI 591

Query: 195 --GAKLTGL 201
              AK  GL
Sbjct: 592 PAAAKKVGL 600


>gi|319746206|gb|EFV98475.1| cell division protein FtsH [Streptococcus agalactiae ATCC 13813]
          Length = 658

 Score = 42.7 bits (99), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLE--DRDV 108
           VL  GPPG GKT LA+ VA E GV F S SG       V   A  + +L  + +  +R +
Sbjct: 224 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRSLFEDAKKAERAI 283

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 284 IFIDEI 289


>gi|313215883|emb|CBY37301.1| unnamed protein product [Oikopleura dioica]
          Length = 626

 Score = 42.7 bits (99), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 67/157 (42%), Gaps = 32/157 (20%)

Query: 43  FIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVN-FRSTSGP------------ 88
           FI  ++ R      +L F GPPG GKT++A+ +AR LG   +R + G             
Sbjct: 268 FICTSQLRGSVQGKILCFHGPPGTGKTSIAKSIARSLGRKYYRFSVGGMSDVAEIKGHRR 327

Query: 89  --VIAKAGDLAALLTNLEDRD-VLFIDEIHRL--------SIIVEEILYPAMEDFQLDLM 137
             V A  G L   L   E  + ++ IDEI +L        S  + E+L P      LD  
Sbjct: 328 TYVGAMPGKLVQCLKKTESENPLILIDEIDKLGRGYQGDPSSALLELLDPEQNVGFLDHY 387

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRF 174
           +        V I+LS+   I     +  ++ PL+DR 
Sbjct: 388 L-------DVPIDLSKALFICTANDLSTISGPLRDRM 417


>gi|238620900|ref|YP_002915726.1| AAA ATPase central domain protein [Sulfolobus islandicus M.16.4]
 gi|238381970|gb|ACR43058.1| AAA ATPase central domain protein [Sulfolobus islandicus M.16.4]
          Length = 585

 Score = 42.7 bits (99), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAA-------LLTNLEDRD-V 108
           +L  GPPG GKT++A+ +A +L  NF   SG  ++ AG L A           L++   +
Sbjct: 362 ILLYGPPGTGKTSIAKALANDLRFNFIELSGEEVSSAGPLDAPKIIAEKFYVALDNAPAI 421

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 422 IFIDEI 427



 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 8/71 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELG-VNFRSTSGPVIAKA-GDLAALLTNLEDR------DV 108
           V+  GPPG GKTT+A+ +A +LG   F      +++K  G+   LL N  D+       V
Sbjct: 95  VILFGPPGTGKTTIAKALANKLGWAYFELRPSKILSKWYGESELLLDNFFDQVEMNTPAV 154

Query: 109 LFIDEIHRLSI 119
           +FIDE+  L++
Sbjct: 155 VFIDELDSLAM 165


>gi|154270233|ref|XP_001535973.1| hypothetical protein HCAG_09086 [Ajellomyces capsulatus NAm1]
 gi|150410080|gb|EDN05468.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 447

 Score = 42.7 bits (99), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 59/110 (53%), Gaps = 11/110 (10%)

Query: 25  RTLEEFT---GQVEA-CSNLKVFIEAAKARAEA----LDHVLFVGPPGLGKTTLAQVVAR 76
           R+LE  +   GQ E  C+++  F++A +  A+         LF GPPG GKT+LAQ +A 
Sbjct: 209 RSLESISLAEGQKEEICNDMCKFLKAQRVYAKTERPYRRGYLFSGPPGTGKTSLAQALAG 268

Query: 77  ELGVNFR--STSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           + G++    S +G  +    +L  L ++L    VL I++I+   I  E++
Sbjct: 269 QYGLDIYMLSLTGQNMTDE-ELQWLCSHLPRCCVLLIEDINSARINCEKM 317


>gi|4587578|gb|AAD25809.1|AC006550_17 Belongs to PF|00004 ATPases associated with various cellular
           activities [Arabidopsis thaliana]
          Length = 983

 Score = 42.7 bits (99), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E  +NF S  GP
Sbjct: 736 VLLYGPPGTGKTLLAKAVATECSLNFLSVKGP 767


>gi|112982853|ref|NP_001036917.1| replication factor C subunit 2 [Bombyx mori]
 gi|54290087|dbj|BAD61055.1| RFC40 [Bombyx mori]
          Length = 340

 Score = 42.7 bits (99), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 6/66 (9%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE- 77
          I   RP+T ++  G  +  S L VF +   A      +++  GPPG+GKTT    +AR  
Sbjct: 24 IEKYRPQTFDDIVGNEDTVSRLAVFAKTGNA-----PNIIIAGPPGVGKTTTILCLARVL 78

Query: 78 LGVNFR 83
          LGV+F+
Sbjct: 79 LGVSFK 84


>gi|328870657|gb|EGG19030.1| replication factor C subunit [Dictyostelium fasciculatum]
          Length = 358

 Score = 42.7 bits (99), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 5/60 (8%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          +S  RPRT+++   Q E    LK  ++       AL H+LF GPPG GKT+    +A +L
Sbjct: 31 VSKYRPRTVDDVAHQDEVVRALKKSLDGG-----ALPHLLFYGPPGTGKTSTILAIAMDL 85


>gi|301154976|emb|CBW14439.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Haemophilus parainfluenzae T3T1]
          Length = 412

 Score = 42.7 bits (99), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD--------LAALLTNLE--- 104
           ++L +GP G GKT LAQ +AR L V F       + +AG         L  LL N +   
Sbjct: 111 NILLIGPTGSGKTLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVLQKLLQNCDYDT 170

Query: 105 ---DRDVLFIDEIHRLS 118
              ++ +++IDEI ++S
Sbjct: 171 EKAEQGIIYIDEIDKIS 187


>gi|297741681|emb|CBI32813.3| unnamed protein product [Vitis vinifera]
          Length = 956

 Score = 42.7 bits (99), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 17/114 (14%)

Query: 24  PRT-LEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVV 74
           PR   E+  GQ E  + L   +E  +   +A           VL  GPPG  KT +A+ V
Sbjct: 662 PRVKWEDVGGQNEVKAQLMEAVEWPQKHQDAFKRIGTRPPTGVLLFGPPGCSKTLMARAV 721

Query: 75  ARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DVLFIDEIHRLSII 120
           A E G+NF +  GP +     G+    + +L  +       ++F DEI  L++I
Sbjct: 722 ASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAVI 775



 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DV 108
           VL  GPPG GKT+LAQ+   + GVN  S +G  I     G+    L  + D        V
Sbjct: 437 VLLHGPPGTGKTSLAQLCICDAGVNLFSVNGAEIVSQYYGESEQALHEIFDSASQAAPAV 496

Query: 109 LFIDEI 114
           +FIDE+
Sbjct: 497 VFIDEL 502


>gi|268323248|emb|CBH36836.1| conserved hypothetical protein, AAA ATPase family and CDC48 family
           [uncultured archaeon]
          Length = 739

 Score = 42.7 bits (99), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL-EDRD-----V 108
           VL  GPPG GKT +A+ VA E   NF S SGP I     G+    L  + ED +     +
Sbjct: 225 VLLQGPPGTGKTLIAKAVANETDANFYSISGPEIMSKFYGESERHLRQIFEDAEKSAPSI 284

Query: 109 LFIDEIHRLS 118
           +FIDE+  ++
Sbjct: 285 IFIDELDSIA 294



 Score = 39.3 bits (90), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 19/32 (59%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT L + VA E   NF S  GP
Sbjct: 497 VLLFGPPGTGKTMLVKAVANESDANFISIKGP 528


>gi|218290651|ref|ZP_03494742.1| ATP-dependent metalloprotease FtsH [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218239316|gb|EED06514.1| ATP-dependent metalloprotease FtsH [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 602

 Score = 42.7 bits (99), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 38/66 (57%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL VGPPG GKT LA+ VA E GV F S SG    +   G  A+ + +L D+       +
Sbjct: 194 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFDQAKKNSPCI 253

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 254 IFIDEI 259


>gi|160943998|ref|ZP_02091228.1| hypothetical protein FAEPRAM212_01499 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444674|gb|EDP21678.1| hypothetical protein FAEPRAM212_01499 [Faecalibacterium prausnitzii
           M21/2]
          Length = 714

 Score = 42.7 bits (99), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDRD------V 108
           VL VGPPG GKT LA+  A E GV F S SG   V    G  A+ + +L D+       +
Sbjct: 249 VLLVGPPGTGKTLLARACAGEAGVPFYSLSGSDFVEMYVGVGASRVRDLFDKAKKTMPCI 308

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 309 IFIDEI 314


>gi|159904872|ref|YP_001548534.1| replication factor C small subunit [Methanococcus maripaludis C6]
 gi|226739142|sp|A9A6K6|RFCS_METM6 RecName: Full=Replication factor C small subunit; Short=RFC small
          subunit; AltName: Full=Clamp loader small subunit
 gi|159886365|gb|ABX01302.1| Replication factor C [Methanococcus maripaludis C6]
          Length = 315

 Score = 42.7 bits (99), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP TL E  G  E    L  ++E      +++ H+LF G PG+GKTT A  +A++L
Sbjct: 10 RPETLPEVVGHHEIIKRLTNYVEK-----KSMPHLLFSGSPGVGKTTAALALAKDL 60


>gi|154151966|ref|YP_001405584.1| AAA family ATPase, CDC48 subfamily protein [Candidatus
           Methanoregula boonei 6A8]
 gi|154000518|gb|ABS56941.1| AAA family ATPase, CDC48 subfamily [Methanoregula boonei 6A8]
          Length = 805

 Score = 42.7 bits (99), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 45/76 (59%), Gaps = 8/76 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNL--EDRD----V 108
           VL  GPPG GKT +A+ VA E G +F S +GP VI+K  G+    L  +  E R+    +
Sbjct: 222 VLLYGPPGTGKTLIAKAVASESGAHFISIAGPEVISKYYGESEQRLREVFEEARENSPSI 281

Query: 109 LFIDEIHRLSIIVEEI 124
           +FIDE+  ++   EE+
Sbjct: 282 IFIDELDSIAPRREEV 297



 Score = 40.0 bits (92), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT +A+ VA E G NF    GP
Sbjct: 495 VLLFGPPGTGKTLIAKAVASESGANFIPVRGP 526


>gi|134046237|ref|YP_001097722.1| replication factor C small subunit [Methanococcus maripaludis C5]
 gi|166225155|sp|A4FZ74|RFCS_METM5 RecName: Full=Replication factor C small subunit; Short=RFC small
          subunit; AltName: Full=Clamp loader small subunit
 gi|132663862|gb|ABO35508.1| replication factor C small subunit [Methanococcus maripaludis C5]
          Length = 315

 Score = 42.7 bits (99), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 6/64 (9%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81
          RP TL E  G  E    L  ++E      +++ H+LF G PG+GKTT A  +A++L G  
Sbjct: 10 RPETLPEVVGHHEIIKRLTNYVEK-----KSMPHLLFSGSPGVGKTTAALALAKDLYGET 64

Query: 82 FRST 85
          +R  
Sbjct: 65 WREN 68


>gi|20092335|ref|NP_618410.1| cell division control protein 48 AAA family protein [Methanosarcina
           acetivorans C2A]
 gi|19917582|gb|AAM06890.1| cell division control protein 48 AAA family protein [Methanosarcina
           acetivorans C2A]
          Length = 786

 Score = 42.7 bits (99), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT +AQ VA+E   NF S  GP
Sbjct: 546 ILLYGPPGTGKTLIAQAVAKESNANFISVKGP 577



 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 47/109 (43%), Gaps = 16/109 (14%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
           T E+  G  +    ++  IE      E   H        V+  GPPG GKT +A+ VA E
Sbjct: 196 TYEDIGGLGQEIMRVREIIEMPMKHPELFAHLNIEPPKGVILYGPPGTGKTLIAKAVANE 255

Query: 78  LGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DVLFIDEIHRLS 118
            G +F   +GP I     G+    L  + +        V+FIDEI  ++
Sbjct: 256 SGASFHYIAGPEIVGKFYGESEERLRKIFEEATQDAPSVIFIDEIDSIA 304


>gi|320582374|gb|EFW96591.1| Peroxisomal biogenesis factor 6 [Pichia angusta DL-1]
          Length = 1136

 Score = 42.7 bits (99), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 4/48 (8%)

Query: 41  KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           ++F +  K R+     +LF GPPG GKT LA+ +A    +NF S  GP
Sbjct: 838 ELFSKGMKKRS----GILFYGPPGTGKTLLAKAIATNFALNFFSVKGP 881


>gi|256372377|ref|YP_003110201.1| ATP-dependent metalloprotease FtsH [Acidimicrobium ferrooxidans DSM
           10331]
 gi|310943114|sp|C7M0M0|FTSH_ACIFD RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|256008961|gb|ACU54528.1| ATP-dependent metalloprotease FtsH [Acidimicrobium ferrooxidans DSM
           10331]
          Length = 660

 Score = 42.7 bits (99), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL------EDRDV 108
           +L VGPPG GKT LA+ VA E GV F S SG    +   G  AA + +L      +   +
Sbjct: 209 ILLVGPPGTGKTLLARAVAGEAGVPFMSVSGSDFMEMFVGVGAARVRDLFQTARRQSPSI 268

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 269 IFIDEI 274


>gi|159041324|ref|YP_001540576.1| ATPase central domain-containing protein [Caldivirga maquilingensis
           IC-167]
 gi|157920159|gb|ABW01586.1| AAA ATPase central domain protein [Caldivirga maquilingensis
           IC-167]
          Length = 318

 Score = 42.7 bits (99), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 77/178 (43%), Gaps = 24/178 (13%)

Query: 54  LDHVLFVGPPGLGKTTLAQVVAREL-GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID 112
           L H+LF GPPG+GKTT A  +AREL G ++RS+              +  L   D   ID
Sbjct: 31  LPHLLFYGPPGVGKTTAALALARELYGDSWRSS--------------VLELNASDERGID 76

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFT-LIAATTRVGLLTN--- 168
            I          +      F+L ++          +  L R   + A+TTR  LL N   
Sbjct: 77  VIREKVKEFARTIPTGPVPFKLVILDEADNMTSDAQQALRRIMEMYASTTRFILLANYIS 136

Query: 169 ----PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
               P+Q R  I  R N    E +   +++ AK TG+ VT++    I   S+G  R A
Sbjct: 137 GIIEPIQSRCAI-FRFNPLPKEAVIERLRQIAKETGVEVTEDGLEAIWEVSQGDMRKA 193


>gi|119499175|ref|XP_001266345.1| DNA replication factor C subunit Rfc3, putative [Neosartorya
           fischeri NRRL 181]
 gi|119414509|gb|EAW24448.1| DNA replication factor C subunit Rfc3, putative [Neosartorya
           fischeri NRRL 181]
          Length = 396

 Score = 42.7 bits (99), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 5/56 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           RP TL++ +G  +  + +  FIEA +     L H+L  GPPG GKT+    +AR +
Sbjct: 52  RPNTLDDVSGHQDILATINKFIEANR-----LPHLLLYGPPGTGKTSTILALARRI 102


>gi|38567232|emb|CAE76524.1| probable replication factor protein [Neurospora crassa]
          Length = 366

 Score = 42.7 bits (99), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 106/246 (43%), Gaps = 35/246 (14%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +   RP+TL + T Q    + L+  ++A+      L H+LF GPPG GKT+    +A+EL
Sbjct: 35  VEKYRPKTLSDVTAQDHTITVLQRTLQASN-----LPHMLFYGPPGTGKTSTILALAKEL 89

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDE----IHRLSIIVEEILYPA---MED 131
                   GP + K+  L   L   ++R +  + E      R+ +      Y A      
Sbjct: 90  -------YGPELIKSRVLE--LNASDERGISIVREKVKDFARMQLTNPSAAYKARYPCPP 140

Query: 132 FQL------DLMVGEGPSA--RSVKI--NLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           F+L      D M  +  SA  R+++    ++RF LI     V  + +PL  R     R  
Sbjct: 141 FKLIILDEADSMTQDAQSALRRTMETYSKITRFCLIC--NYVTRIIDPLASRCS-KFRFK 197

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
             +  + K  ++  A+L G+ + + A   +   S G  R A   L+      EV  AK +
Sbjct: 198 SLDQGNAKKRLEEIAQLEGVGLEEGAVDALIKCSEGDLRKAITYLQSAARLMEV-DAKLV 256

Query: 242 TREIAD 247
           T ++ +
Sbjct: 257 TVKVVE 262


>gi|47551109|ref|NP_999733.1| katanin p60 ATPase-containing subunit [Strongylocentrotus
           purpuratus]
 gi|60390159|sp|O61577|KTNA1_STRPU RecName: Full=Katanin p60 ATPase-containing subunit; Short=Katanin
           p60 subunit; AltName: Full=p60 katanin
 gi|3098603|gb|AAC15706.1| katanin p60 subunit [Strongylocentrotus purpuratus]
          Length = 516

 Score = 42.7 bits (99), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 80/192 (41%), Gaps = 32/192 (16%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108
           VL VGPPG GKT LA+ VA E G  F + S   +     G+   L      +        
Sbjct: 270 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSASLTSKYHGESEKLVRLLFEMARFYAPST 329

Query: 109 LFIDEIHRL-SIIVEEILYPAMEDFQLDLMVG-EGPSARSVKINLSRFTLIAATTRVGL- 165
           +FIDEI  + S       + A    + +L++  +G S  S     S+  ++ A T     
Sbjct: 330 IFIDEIDSICSKRGTGSEHEASRRVKSELLIQMDGVSGPSAGEESSKMVMVLAATNFPWD 389

Query: 166 ----LTNPLQDRFGIP----------IRLNFYEIE-----DLKTIVQRGAKLTGLAVTD- 205
               L   L+ R  IP          +R+N  E+      DLK+I ++    +G  +T+ 
Sbjct: 390 IDEALRRRLEKRIYIPLPEIDGREQLLRINLKEVPLADDIDLKSIAEKMDGYSGADITNV 449

Query: 206 -EAACEIAMRSR 216
              A  +AMR R
Sbjct: 450 CRDASMMAMRRR 461


>gi|77411319|ref|ZP_00787668.1| cell division protein FtsH [Streptococcus agalactiae CJB111]
 gi|77162655|gb|EAO73617.1| cell division protein FtsH [Streptococcus agalactiae CJB111]
          Length = 658

 Score = 42.7 bits (99), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLE--DRDV 108
           VL  GPPG GKT LA+ VA E GV F S SG       V   A  + +L  + +  +R +
Sbjct: 224 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRSLFEDAKKAERAI 283

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 284 IFIDEI 289


>gi|310778379|ref|YP_003966712.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Ilyobacter
           polytropus DSM 2926]
 gi|309747702|gb|ADO82364.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Ilyobacter
           polytropus DSM 2926]
          Length = 416

 Score = 42.7 bits (99), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 64/133 (48%), Gaps = 31/133 (23%)

Query: 17  ADISLLRPR----TLEEFT-GQVEACSNLKVFIEAA------KARAEALD------HVLF 59
           ++I+LL+P+    +L+E+  GQ  A   L V +         K + E  D      +VL 
Sbjct: 60  SEINLLKPKEIKTSLDEYVIGQEHAKKVLAVSVYNHYKRILHKDKREESDVELQKSNVLL 119

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL----------ED 105
           +GP G GKT LAQ +AR L V F       + +AG    D+  +L  L           +
Sbjct: 120 IGPTGSGKTLLAQTLARTLHVPFAIADATTLTEAGYVGDDVENVLVRLLQAADYDVDAAE 179

Query: 106 RDVLFIDEIHRLS 118
           R +++IDEI +++
Sbjct: 180 RGIIYIDEIDKIA 192


>gi|306834615|ref|ZP_07467727.1| cell division protein FtsH [Streptococcus bovis ATCC 700338]
 gi|304423251|gb|EFM26405.1| cell division protein FtsH [Streptococcus bovis ATCC 700338]
          Length = 660

 Score = 42.7 bits (99), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLE--DRDV 108
           VL  GPPG GKT LA+ VA E GV F S SG       V   A  + +L  + +  +R +
Sbjct: 223 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRSLFEDAKKAERAI 282

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 283 IFIDEI 288


>gi|296270180|ref|YP_003652812.1| shikimate kinase [Thermobispora bispora DSM 43833]
 gi|296092967|gb|ADG88919.1| Shikimate kinase [Thermobispora bispora DSM 43833]
          Length = 165

 Score = 42.7 bits (99), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 20/38 (52%), Positives = 26/38 (68%)

Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG 94
          V+ +GPPG GKTT+ +++A  LGV FR T   V A AG
Sbjct: 5  VVLIGPPGAGKTTVGRILADRLGVPFRDTDADVEAVAG 42


>gi|291542674|emb|CBL15784.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Ruminococcus
           bromii L2-63]
          Length = 446

 Score = 42.7 bits (99), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 71/146 (48%), Gaps = 30/146 (20%)

Query: 3   DREGLLSRNVSQEDADIS---LLRPRT----LEEFT-GQVEACSNLKVFIEAAKARA--- 51
           + E  LS++   +  ++S   LL+P+     L+E+  GQ  A   L V +     RA   
Sbjct: 53  ENENKLSKSGEPQTPELSVDELLKPKEIKTILDEYVIGQDHAKVTLSVAVYNHYKRAFSN 112

Query: 52  -EALD----HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTN 102
            E++D    +VL +GP G+GKT LAQ +A+ L V F       + +AG    D+  +L  
Sbjct: 113 DESVDFAKSNVLLLGPTGVGKTLLAQTLAKALDVPFAIADATTLTEAGYVGEDVENILLK 172

Query: 103 L----------EDRDVLFIDEIHRLS 118
           L           +  +++IDEI +++
Sbjct: 173 LIQAADFDIEKAEHGIIYIDEIDKIA 198


>gi|225867632|ref|YP_002743580.1| cell division protease FtsH [Streptococcus equi subsp.
           zooepidemicus]
 gi|225700908|emb|CAW97578.1| putative cell division protease FtsH [Streptococcus equi subsp.
           zooepidemicus]
          Length = 657

 Score = 42.7 bits (99), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLE--DRDV 108
           VL  GPPG GKT LA+ VA E GV F S SG       V   A  + +L  + +  +R +
Sbjct: 223 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRSLFEDAKKAERAI 282

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 283 IFIDEI 288


>gi|325191470|emb|CCA26243.1| peroxisome biogenesis factor putative [Albugo laibachii Nc14]
          Length = 1135

 Score = 42.7 bits (99), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 20/37 (54%), Positives = 25/37 (67%), Gaps = 1/37 (2%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK 92
           +L  GPPG GKT +A  VA E G+NF S  GP V++K
Sbjct: 866 LLLFGPPGCGKTLIASAVAAECGLNFISVKGPEVLSK 902


>gi|256370652|ref|YP_003108477.1| N terminal region of DNA polymerase III subunit gamma [Candidatus
           Sulcia muelleri SMDSEM]
 gi|256009444|gb|ACU52804.1| N terminal region of DNA polymerase III, gamma subunit [Candidatus
           Sulcia muelleri SMDSEM]
          Length = 347

 Score = 42.7 bits (99), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 48/112 (42%), Gaps = 22/112 (19%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFR 83
           PR  EE  GQ      LK  IE  K  +++    LF GP G+GKTT A+++AR++  NF 
Sbjct: 12  PRDFEEVIGQKNITETLKKAIEK-KMLSKSF---LFCGPRGVGKTTCAKILARKVN-NFS 66

Query: 84  STSGPVIAKAGDLAALLTNLED-----------------RDVLFIDEIHRLS 118
                 +    +L A   N  D                   V  IDE+H LS
Sbjct: 67  DEEKNSMFNIIELDAASNNSVDDIRNIINQVNFRPQYGKYKVYIIDEVHMLS 118


>gi|261379792|ref|ZP_05984365.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           subflava NJ9703]
 gi|284797477|gb|EFC52824.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           subflava NJ9703]
          Length = 421

 Score = 42.7 bits (99), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +AR+L V F       + +AG    D+  ++T L        
Sbjct: 115 NILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDV 174

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 175 EKAQRGIVYIDEIDKIS 191


>gi|225869502|ref|YP_002745449.1| cell division protease FtsH [Streptococcus equi subsp. equi 4047]
 gi|225698906|emb|CAW91898.1| putative cell division protease FtsH [Streptococcus equi subsp.
           equi 4047]
          Length = 656

 Score = 42.7 bits (99), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLE--DRDV 108
           VL  GPPG GKT LA+ VA E GV F S SG       V   A  + +L  + +  +R +
Sbjct: 222 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRSLFEDAKKAERAI 281

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 282 IFIDEI 287


>gi|114797075|ref|YP_759923.1| AAA family ATPase [Hyphomonas neptunium ATCC 15444]
 gi|114737249|gb|ABI75374.1| ATPase, AAA family [Hyphomonas neptunium ATCC 15444]
          Length = 318

 Score = 42.7 bits (99), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 71/168 (42%), Gaps = 26/168 (15%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKAGDLAALLTNLEDR-------- 106
           HVL  GPPG  KT LAQ  +R + + F R    P +     L   L N +          
Sbjct: 40  HVLLEGPPGTAKTLLAQCFSRAISLQFGRIQFTPDLMPGDVLGTNLFNFQTNQFSLTKGP 99

Query: 107 ---DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
              D+L  DEI+R     +  L  AM++ ++ +         S  +N  RFT+IA    +
Sbjct: 100 IFTDILLADEINRTPPKTQAALLEAMQERKVTI------DGESYPLN-PRFTVIATQNPI 152

Query: 164 GLL-TNPLQ----DRFGIPIRLNF-YEIEDLKTIVQRGAKLTGLAVTD 205
               T PL     DRF     L +    E+++ + Q G + TG+   +
Sbjct: 153 EQQGTYPLPEAQLDRFLFKHTLEYPTREEEIRIVAQHGTR-TGMKTAE 199


>gi|110005106|emb|CAK99435.1| putative conserved aaa type atpase protein [Spiroplasma citri]
          Length = 411

 Score = 42.7 bits (99), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 50/212 (23%), Positives = 96/212 (45%), Gaps = 29/212 (13%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           +LRP T+ +  GQ    +     I +   +      ++F G PG+GK+++A+ +A +L +
Sbjct: 8   VLRPTTITDIIGQSHLINEQNGVI-SRMLKYNYASSLIFYGDPGVGKSSIARALANDLQL 66

Query: 81  NFRSTSGPVIAKAGDLAALL---TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
            + +     I K  DL  ++    N E R ++ ++E+HR++   ++IL   +E+  L + 
Sbjct: 67  EY-AIFNAGINKKQDLEKIIKQAANFE-RFIIIVEEVHRMNKDRQDILLQYLENGHLIMF 124

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQR-- 194
                                 T     + NP L+ R  I I+L    ++++ T +Q+  
Sbjct: 125 A-------------------CTTENPYFVINPALRSRANI-IKLERITVDEMLTGLQKII 164

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
             K   L +T++A   I   + G  RIA  +L
Sbjct: 165 TKKKLPLTITNDALLLICQLASGDLRIAINIL 196


>gi|3377851|gb|AAC28233.1| contains similarity to ATPases associated with various cellular
           activities (Pfam: AAA.hmm, score: 155.05) [Arabidopsis
           thaliana]
 gi|7267174|emb|CAB77886.1| putative vesicle transfer ATPase [Arabidopsis thaliana]
          Length = 536

 Score = 42.7 bits (99), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 84/200 (42%), Gaps = 33/200 (16%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTS-GPVIAKA--------GDLAALLTNLEDRD 107
           VLF GPPG GKT+ A+V+A + G+         V++K         G + +    L D  
Sbjct: 291 VLFEGPPGTGKTSCARVIANQAGIPLLYVPLEAVMSKYYGESERLLGAVFSQANELPDGA 350

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDF------QLDLMVGEGPSARSVKINLSRFTLIAATT 161
           ++F+DEI   +I  +  ++ A          Q+D    E            +  +IAAT 
Sbjct: 351 IIFLDEIDAFAISRDSEMHEATRRVLSVLLRQIDGFEQE-----------KKVVVIAATN 399

Query: 162 RVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRI 221
           R   L   L  RF   I  +  +++  + I+ + AK         +  E+   ++ T  +
Sbjct: 400 RKQDLDPALISRFDSMIMFDLPDLQTRQEIIAQYAKQL-------SKPELVQLAQATEAM 452

Query: 222 AGRLLRRVRDFAEVAHAKTI 241
           +GR +R V   AE   A  I
Sbjct: 453 SGRDIRDVCQGAERTWASKI 472


>gi|76787819|ref|YP_328742.1| cell division protein FtsH [Streptococcus agalactiae A909]
 gi|77405616|ref|ZP_00782705.1| cell division protein FtsH [Streptococcus agalactiae H36B]
 gi|76562876|gb|ABA45460.1| cell division protein FtsH [Streptococcus agalactiae A909]
 gi|77175760|gb|EAO78540.1| cell division protein FtsH [Streptococcus agalactiae H36B]
          Length = 658

 Score = 42.7 bits (99), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLE--DRDV 108
           VL  GPPG GKT LA+ VA E GV F S SG       V   A  + +L  + +  +R +
Sbjct: 224 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRSLFEDAKKAERAI 283

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 284 IFIDEI 289


>gi|22536201|ref|NP_687052.1| cell division protein FtsH [Streptococcus agalactiae 2603V/R]
 gi|25010090|ref|NP_734485.1| cell division protein FtsH [Streptococcus agalactiae NEM316]
 gi|76797989|ref|ZP_00780248.1| cell division protein FtsH [Streptococcus agalactiae 18RS21]
 gi|77407696|ref|ZP_00784451.1| cell division protein FtsH [Streptococcus agalactiae COH1]
 gi|77414466|ref|ZP_00790616.1| cell division protein FtsH [Streptococcus agalactiae 515]
 gi|22533018|gb|AAM98924.1|AE014191_16 cell division protein FtsH [Streptococcus agalactiae 2603V/R]
 gi|23094441|emb|CAD45660.1| cell division protein FtsH [Streptococcus agalactiae NEM316]
 gi|76586669|gb|EAO63168.1| cell division protein FtsH [Streptococcus agalactiae 18RS21]
 gi|77159476|gb|EAO70637.1| cell division protein FtsH [Streptococcus agalactiae 515]
 gi|77173695|gb|EAO76809.1| cell division protein FtsH [Streptococcus agalactiae COH1]
          Length = 658

 Score = 42.7 bits (99), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLE--DRDV 108
           VL  GPPG GKT LA+ VA E GV F S SG       V   A  + +L  + +  +R +
Sbjct: 224 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRSLFEDAKKAERAI 283

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 284 IFIDEI 289


>gi|328955416|ref|YP_004372749.1| ATP-dependent metalloprotease FtsH [Coriobacterium glomerans PW2]
 gi|328455740|gb|AEB06934.1| ATP-dependent metalloprotease FtsH [Coriobacterium glomerans PW2]
          Length = 651

 Score = 42.7 bits (99), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 41/106 (38%), Positives = 50/106 (47%), Gaps = 19/106 (17%)

Query: 26  TLEEFTGQVEACSNLKV---FIEAAKARAEALDH-----VLFVGPPGLGKTTLAQVVARE 77
           T ++  GQ EA   LK    F+E  K R E +        L VGPPG GKT +A+ VA E
Sbjct: 179 TFKDVAGQEEAKEALKEVVDFLENPK-RYEEIGAKLPRGALLVGPPGTGKTLMAKAVAGE 237

Query: 78  LGVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEI 114
            GV F S SG            AK  DL     N +   ++FIDEI
Sbjct: 238 AGVPFFSISGSEFVEMFVGRGAAKVRDLFK-QANEKAPCIVFIDEI 282


>gi|319637747|ref|ZP_07992513.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Neisseria
           mucosa C102]
 gi|317400902|gb|EFV81557.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Neisseria
           mucosa C102]
          Length = 421

 Score = 42.7 bits (99), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +AR+L V F       + +AG    D+  ++T L        
Sbjct: 115 NILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDV 174

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 175 EKAQRGIVYIDEIDKIS 191


>gi|313206012|ref|YP_004045189.1| DNA polymerase iii, subunits gamma and tau [Riemerella
           anatipestifer DSM 15868]
 gi|312445328|gb|ADQ81683.1| DNA polymerase III, subunits gamma and tau [Riemerella
           anatipestifer DSM 15868]
          Length = 559

 Score = 42.7 bits (99), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 95/230 (41%), Gaps = 41/230 (17%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  +   GQ    S++   +E A A  +    +LF GP G+GKTT A+++AR++    
Sbjct: 12  RPQEFDTVVGQ----SHITDTLEHAIAENQLAQALLFCGPRGVGKTTCARILARKINEKD 67

Query: 83  RSTSG--------PVIAKAGDLAALLTNLEDR----------DVLFIDEIHRLSIIVEEI 124
            +TS          + A + +    +  L D+           V  IDE+H LS      
Sbjct: 68  GATSEDGFSYNIFELDAASNNSVDDIRELTDQVRYAPQVGKYKVYIIDEVHMLS------ 121

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
                + F   L   E P A ++         I ATT    +   +  R  I        
Sbjct: 122 ----SQAFNAFLKTLEEPPAHAI--------FILATTEKHKIIPTILSRCQI-YDFKRIT 168

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
           IED++  +++ A   G++  D+A   IA ++ G  R A  +  R+  F +
Sbjct: 169 IEDIQGHLRKIADKEGISYEDDALFLIAQKADGALRDALSIFDRLVTFTQ 218


>gi|304405792|ref|ZP_07387450.1| ATP-dependent metalloprotease FtsH [Paenibacillus curdlanolyticus
           YK9]
 gi|304345035|gb|EFM10871.1| ATP-dependent metalloprotease FtsH [Paenibacillus curdlanolyticus
           YK9]
          Length = 671

 Score = 42.7 bits (99), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 202 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 261

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 262 IFIDEI 267


>gi|261334065|emb|CBH17059.1| vesicular transport protein (CDC48 homologue),putative [Trypanosoma
           brucei gambiense DAL972]
          Length = 706

 Score = 42.7 bits (99), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 20/39 (51%), Positives = 24/39 (61%), Gaps = 3/39 (7%)

Query: 53  ALDH---VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
            LDH   VL  GPPG GKT +A+ +A + G NF S  GP
Sbjct: 443 GLDHPVGVLLYGPPGCGKTLVAKAIANQSGANFISIKGP 481



 Score = 36.6 bits (83), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL------EDRDV 108
           VL  GPPG GKT L   ++  L V     S P I    +GD  A L NL          +
Sbjct: 170 VLLHGPPGCGKTKLVHAISGSLQVPLFFVSAPEIVSGISGDSEAKLRNLFLDAISAAPSI 229

Query: 109 LFIDEI 114
           +FIDE+
Sbjct: 230 VFIDEV 235


>gi|290579539|ref|YP_003483931.1| putative cell division protein [Streptococcus mutans NN2025]
 gi|254996438|dbj|BAH87039.1| putative cell division protein [Streptococcus mutans NN2025]
          Length = 656

 Score = 42.7 bits (99), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLE--DRDV 108
           VL  GPPG GKT LA+ VA E GV F S SG       V   A  + +L  + +  +R +
Sbjct: 222 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRSLFEDAKKAERAI 281

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 282 IFIDEI 287


>gi|258510218|ref|YP_003183652.1| ATP-dependent metalloprotease FtsH [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257476944|gb|ACV57263.1| ATP-dependent metalloprotease FtsH [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 602

 Score = 42.7 bits (99), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 38/66 (57%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL VGPPG GKT LA+ VA E GV F S SG    +   G  A+ + +L D+       +
Sbjct: 194 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFDQAKKNSPCI 253

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 254 IFIDEI 259


>gi|145353045|ref|XP_001420841.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581076|gb|ABO99134.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 334

 Score = 42.7 bits (99), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+TL++  G  +A   ++  +     R+  + +++F GPPG GKT+   V+AREL
Sbjct: 8  RPKTLDDLVGNDDAVDRMRTMV-----RSGFMPNLIFSGPPGCGKTSAIGVLAREL 58


>gi|156740727|ref|YP_001430856.1| ATP-dependent metalloprotease FtsH [Roseiflexus castenholzii DSM
           13941]
 gi|156232055|gb|ABU56838.1| ATP-dependent metalloprotease FtsH [Roseiflexus castenholzii DSM
           13941]
          Length = 638

 Score = 42.7 bits (99), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 52/104 (50%), Gaps = 15/104 (14%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAK--ARAEALDH-----VLFVGPPGLGKTTLAQVVAREL 78
           T  +  GQ EA  +L   +E  K   +  AL       VL VGPPG GKT L++ VA E 
Sbjct: 162 TFADVAGQEEAKQDLTEVVEFLKFPDKFAALGARIPRGVLMVGPPGTGKTLLSRAVAGEA 221

Query: 79  GVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEI 114
           GV F S SG    +   G  A+ + +L D+       ++FIDEI
Sbjct: 222 GVPFFSISGSEFVEMFVGVGASRVRDLFDQAKRNAPCIVFIDEI 265


>gi|148658441|ref|YP_001278646.1| ATP-dependent metalloprotease FtsH [Roseiflexus sp. RS-1]
 gi|148570551|gb|ABQ92696.1| ATP-dependent metalloprotease FtsH [Roseiflexus sp. RS-1]
          Length = 640

 Score = 42.7 bits (99), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 52/104 (50%), Gaps = 15/104 (14%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAK--ARAEALDH-----VLFVGPPGLGKTTLAQVVAREL 78
           T  +  GQ EA  +L   +E  K   +  AL       VL VGPPG GKT L++ VA E 
Sbjct: 162 TFADVAGQEEAKQDLTEVVEFLKFPDKFAALGARIPRGVLMVGPPGTGKTLLSRAVAGEA 221

Query: 79  GVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEI 114
           GV F S SG    +   G  A+ + +L D+       ++FIDEI
Sbjct: 222 GVPFFSISGSEFVEMFVGVGASRVRDLFDQAKRNAPCIVFIDEI 265


>gi|71902680|ref|YP_279483.1| cell division protein [Streptococcus pyogenes MGAS6180]
 gi|71801775|gb|AAX71128.1| cell division protein [Streptococcus pyogenes MGAS6180]
          Length = 659

 Score = 42.7 bits (99), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLE--DRDV 108
           VL  GPPG GKT LA+ VA E GV F S SG       V   A  + +L  + +  +R +
Sbjct: 223 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRSLFEDAKKAERAI 282

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 283 IFIDEI 288


>gi|22329309|ref|NP_171799.2| PEX6 (PEROXIN 6); ATP binding / ATPase/ nucleoside-triphosphatase/
           nucleotide binding [Arabidopsis thaliana]
 gi|75330784|sp|Q8RY16|PEX6_ARATH RecName: Full=Peroxisome biogenesis protein 6; AltName:
           Full=Peroxin-6; Short=AtPEX6
 gi|19310449|gb|AAL84960.1| At1g03000/F22D16.27 [Arabidopsis thaliana]
 gi|24797060|gb|AAN64542.1| At1g03000/F22D16.27 [Arabidopsis thaliana]
 gi|37223130|gb|AAQ90161.1| AAA family ATPase peroxin 6 [Arabidopsis thaliana]
 gi|332189392|gb|AEE27513.1| peroxin 6 [Arabidopsis thaliana]
          Length = 941

 Score = 42.7 bits (99), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E  +NF S  GP
Sbjct: 694 VLLYGPPGTGKTLLAKAVATECSLNFLSVKGP 725


>gi|227828708|ref|YP_002830488.1| ATPase AAA [Sulfolobus islandicus M.14.25]
 gi|229585926|ref|YP_002844428.1| AAA ATPase central domain protein [Sulfolobus islandicus M.16.27]
 gi|227460504|gb|ACP39190.1| AAA ATPase central domain protein [Sulfolobus islandicus M.14.25]
 gi|228020976|gb|ACP56383.1| AAA ATPase central domain protein [Sulfolobus islandicus M.16.27]
 gi|323475914|gb|ADX86520.1| AAA ATPase central domain protein [Sulfolobus islandicus REY15A]
 gi|323478510|gb|ADX83748.1| AAA ATPase central domain protein [Sulfolobus islandicus HVE10/4]
          Length = 585

 Score = 42.7 bits (99), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAA-------LLTNLEDRD-V 108
           +L  GPPG GKT++A+ +A +L  NF   SG  ++ AG L A           L++   +
Sbjct: 362 ILLYGPPGTGKTSIAKALANDLRFNFIELSGEEVSSAGPLDAPKIIAEKFYVALDNAPAI 421

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 422 IFIDEI 427



 Score = 40.0 bits (92), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 8/71 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELG-VNFRSTSGPVIAKA-GDLAALLTNLEDR------DV 108
           V+  GPPG GKTT+A+ +A +LG   F      +++K  G+   LL N  D+       V
Sbjct: 95  VILFGPPGTGKTTIAKALANKLGWAYFELRPSKILSKWYGESELLLDNFFDQVEMNTPAV 154

Query: 109 LFIDEIHRLSI 119
           +FIDE+  L++
Sbjct: 155 VFIDELDSLAM 165


>gi|262199085|ref|YP_003270294.1| ATP-dependent protease La [Haliangium ochraceum DSM 14365]
 gi|262082432|gb|ACY18401.1| ATP-dependent protease La [Haliangium ochraceum DSM 14365]
          Length = 803

 Score = 42.7 bits (99), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 100/236 (42%), Gaps = 50/236 (21%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           +  VGPPG+GKT+L + VA  LG  + R+  G V  +A              G +A  L 
Sbjct: 351 LCLVGPPGVGKTSLGRSVATALGRKYVRTALGGVRDEAEIRGHRRTYIGALPGRIAGALK 410

Query: 102 NLEDRD-VLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152
                + V+ +DE+ +L        S  + E+L P       D  +        + ++LS
Sbjct: 411 KAGAMNPVMVLDELDKLGSDHRGDPSSALLEVLDPEQNSTFSDHYL-------EIDLDLS 463

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL----------KTIVQRGAKLTGLA 202
           R   IA   +   +  PL DR  I IR+  Y +E+           K I + G     L 
Sbjct: 464 RVMFIATANQTETIPAPLLDRLEI-IRIPGYTLEEKRVIARKHLLPKQIAEHGLGRDQLR 522

Query: 203 VTDEAACEIAMRSRGTPRIAGRLLRRV-RDFAEVAHAKTITREIADAALLRLAIDK 257
           V DEA  E+        R AG  +R + R+ A V     +  E+A A++  L++DK
Sbjct: 523 VDDEALDELIG---SYTREAG--VRNLEREIAAVCRHAAV--EVASASVSELSVDK 571


>gi|254486673|ref|ZP_05099878.1| putative Cell division protease FtsH family protein [Roseobacter
           sp. GAI101]
 gi|214043542|gb|EEB84180.1| putative Cell division protease FtsH family protein [Roseobacter
           sp. GAI101]
          Length = 686

 Score = 42.7 bits (99), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 35/77 (45%), Gaps = 9/77 (11%)

Query: 51  AEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR---- 106
           +E    VL  GPPG GKT LAQ +A   G+   +TS  +  KAG     L  L +     
Sbjct: 292 SEVTSSVLLYGPPGTGKTLLAQALAGSAGIPLIATSYGICQKAGHQGDFLRTLSESVEKT 351

Query: 107 -----DVLFIDEIHRLS 118
                 V F+DE+   S
Sbjct: 352 IASAPCVFFVDELDSFS 368


>gi|156062848|ref|XP_001597346.1| hypothetical protein SS1G_01540 [Sclerotinia sclerotiorum 1980]
 gi|154696876|gb|EDN96614.1| hypothetical protein SS1G_01540 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 390

 Score = 42.7 bits (99), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 5/56 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           RP TLE+ +G  +  + +  F++  +     L H+LF GPPG GKT+    +AR +
Sbjct: 52  RPDTLEDVSGHQDILATINKFVDTNR-----LPHLLFYGPPGTGKTSTILALARRI 102


>gi|51701862|sp|Q9UVU5|PEX6_PICAN RecName: Full=Peroxisomal biogenesis factor 6; AltName:
           Full=Peroxin-6
 gi|5817538|gb|AAD52812.1|AF129874_1 peroxin-6 [Pichia angusta]
          Length = 1135

 Score = 42.7 bits (99), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 4/48 (8%)

Query: 41  KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           ++F +  K R+     +LF GPPG GKT LA+ +A    +NF S  GP
Sbjct: 837 ELFSKGMKKRS----GILFYGPPGTGKTLLAKAIATNFALNFFSVKGP 880


>gi|332977179|gb|EGK13978.1| replication-associated recombination protein A [Psychrobacter sp.
           1501(2011)]
          Length = 438

 Score = 42.7 bits (99), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 116/281 (41%), Gaps = 53/281 (18%)

Query: 9   SRNVSQEDADISL-LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPG 64
           S N+   D  ++  +RP+TLEE  GQ    S    ++ F++        L  ++  G  G
Sbjct: 5   STNLPYSDTPLAQRMRPKTLEEVIGQNHLLSPGTPIRSFVDHGH-----LPSLILHGEAG 59

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLT--------NLE-DRDVLFIDEIH 115
           +GKTT+A ++A  +G  F   S  +      L  +L          LE    V+FIDEIH
Sbjct: 60  IGKTTIAMLLADAVGRPFYPLSA-INTGVKQLREVLDAGSKPGQGGLEFAAPVVFIDEIH 118

Query: 116 RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT--NPLQDR 173
           R +   ++ L  A+E        GE              TLI ATT     +  N L  R
Sbjct: 119 RFNKAQQDALLGAVES-------GE-------------ITLIGATTENPSFSVNNALLSR 158

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAK----LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
             +  RL     E ++ ++QR       L+ L +  EA  +IA  ++G  R +  LL   
Sbjct: 159 CQV-YRLEPLTEEQIEQLLQRAISEDEFLSKLDIQLEATPQIAKLAQGDARKSLNLLELA 217

Query: 230 RDFAEVAHAKTITRE-----IADAALLRLAIDKMGFDQLDL 265
              ++ +    +  +     +A  AL R   DK G    D+
Sbjct: 218 VQASDHSQQPIVINDALLSSVAQTALQRY--DKDGDQHYDI 256


>gi|332522221|ref|ZP_08398473.1| ATP-dependent metallopeptidase HflB [Streptococcus porcinus str.
           Jelinkova 176]
 gi|332313485|gb|EGJ26470.1| ATP-dependent metallopeptidase HflB [Streptococcus porcinus str.
           Jelinkova 176]
          Length = 658

 Score = 42.7 bits (99), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLE--DRDV 108
           VL  GPPG GKT LA+ VA E GV F S SG       V   A  + +L  + +  +R +
Sbjct: 223 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRSLFEDAKKAERAI 282

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 283 IFIDEI 288


>gi|241760359|ref|ZP_04758454.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           flavescens SK114]
 gi|241319237|gb|EER55715.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           flavescens SK114]
          Length = 421

 Score = 42.7 bits (99), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +AR+L V F       + +AG    D+  ++T L        
Sbjct: 115 NILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDV 174

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 175 EKAQRGIVYIDEIDKIS 191


>gi|222152216|ref|YP_002561391.1| cell division protease FtsH [Streptococcus uberis 0140J]
 gi|222113027|emb|CAR40340.1| putative cell division protease FtsH [Streptococcus uberis 0140J]
          Length = 655

 Score = 42.7 bits (99), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLE--DRDV 108
           VL  GPPG GKT LA+ VA E GV F S SG       V   A  + +L  + +  +R +
Sbjct: 222 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRSLFEDAKKAERAI 281

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 282 IFIDEI 287


>gi|219851454|ref|YP_002465886.1| AAA family ATPase, CDC48 subfamily [Methanosphaerula palustris
           E1-9c]
 gi|219545713|gb|ACL16163.1| AAA family ATPase, CDC48 subfamily [Methanosphaerula palustris
           E1-9c]
          Length = 806

 Score = 42.7 bits (99), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-----AGDLAALLTNLEDR--DV 108
           VL  GPPG GKT +A+ VA E+  +F + SGP +I+K      G+L  +    +     +
Sbjct: 224 VLLYGPPGTGKTLIAKAVANEVDAHFITLSGPEIISKYYGESEGNLRQVFEEAQQNAPTI 283

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 284 IFIDEIDSIA 293



 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 22/41 (53%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           K    A   +L  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 487 KLETSAPKGILLFGPPGTGKTMLAKAVANESQCNFISVKGP 527


>gi|218884381|ref|YP_002428763.1| AAA family ATPase, CDC48 subfamily [Desulfurococcus kamchatkensis
           1221n]
 gi|218765997|gb|ACL11396.1| AAA family ATPase, CDC48 subfamily [Desulfurococcus kamchatkensis
           1221n]
          Length = 729

 Score = 42.7 bits (99), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 20/34 (58%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL  GPPG GKT LA+ VA E G NF +  GP I
Sbjct: 491 VLLYGPPGCGKTLLAKAVATESGANFIAVKGPEI 524



 Score = 37.4 bits (85), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT LA+ +A E+   F + +GP I
Sbjct: 211 ILLYGPPGTGKTLLAKALANEVNAYFVTINGPEI 244


>gi|94987644|ref|YP_595745.1| cell division protein [Streptococcus pyogenes MGAS9429]
 gi|94541152|gb|ABF31201.1| cell division protein [Streptococcus pyogenes MGAS9429]
          Length = 659

 Score = 42.7 bits (99), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLE--DRDV 108
           VL  GPPG GKT LA+ VA E GV F S SG       V   A  + +L  + +  +R +
Sbjct: 223 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRSLFEDAKKAERAI 282

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 283 IFIDEI 288


>gi|71754681|ref|XP_828255.1| vesicular transport protein [Trypanosoma brucei TREU927]
 gi|70833641|gb|EAN79143.1| vesicular transport protein (CDC48 homologue), putative
           [Trypanosoma brucei]
          Length = 706

 Score = 42.7 bits (99), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 20/39 (51%), Positives = 24/39 (61%), Gaps = 3/39 (7%)

Query: 53  ALDH---VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
            LDH   VL  GPPG GKT +A+ +A + G NF S  GP
Sbjct: 443 GLDHPVGVLLYGPPGCGKTLVAKAIANQSGANFISIKGP 481



 Score = 36.6 bits (83), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL------EDRDV 108
           VL  GPPG GKT L   ++  L V     S P I    +GD  A L NL          +
Sbjct: 170 VLLHGPPGCGKTKLVHAISGSLQVPLFFVSAPEIVSGISGDSEAKLRNLFLDAISAAPSI 229

Query: 109 LFIDEI 114
           +FIDE+
Sbjct: 230 VFIDEV 235


>gi|163801289|ref|ZP_02195188.1| hypothetical protein 1103602000598_AND4_10489 [Vibrio sp. AND4]
 gi|159174778|gb|EDP59578.1| hypothetical protein AND4_10489 [Vibrio sp. AND4]
          Length = 1620

 Score = 42.7 bits (99), Expect = 0.085,   Method: Composition-based stats.
 Identities = 19/44 (43%), Positives = 27/44 (61%)

Query: 48   KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA 91
            K R + +  +L + PPG GKTTL + VA +LG+ F   +GP I 
Sbjct: 1253 KKRTDLMGMLLLISPPGYGKTTLIEYVAHKLGLVFMKINGPSIG 1296


>gi|124006624|ref|ZP_01691456.1| spore formation protein [Microscilla marina ATCC 23134]
 gi|123987779|gb|EAY27470.1| spore formation protein [Microscilla marina ATCC 23134]
          Length = 433

 Score = 42.7 bits (99), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 92/213 (43%), Gaps = 40/213 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVA---RELGVNFRSTSGPVIAKAGDLAALLTNLEDRD----- 107
           H++F+G PG GKT +A+++A   +E+G+   S    V A+  DL         +      
Sbjct: 212 HLVFMGNPGTGKTEVARLIAEIFQEIGL--LSRGHLVEARRSDLVEKYVGHTAKKVEEVV 269

Query: 108 ------VLFIDEIHRLSI--------IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSR 153
                 VLFIDE + L+            + L P ME+++ +L+V     A     ++ R
Sbjct: 270 MNALGGVLFIDEAYALTNGGTQDFGPEAIDTLTPLMENYRENLIV----IAAGYTKDMER 325

Query: 154 FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEA---ACE 210
           F  +AA          L  RF   I  + Y +++L  I ++     G  +TD A   A +
Sbjct: 326 F--LAA-------NQGLSSRFSEVIHFDDYNLDELTQIFEKMCHDRGYELTDAAKLHARK 376

Query: 211 IAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           + M+S GT        R VR+  E  + K   R
Sbjct: 377 LIMKSFGTDAAKFGNGRGVRNLFEKVYMKQADR 409


>gi|85067857|gb|ABC69312.1| mitochondrial Lon protease [Pichia angusta]
          Length = 1098

 Score = 42.7 bits (99), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 62/160 (38%), Gaps = 34/160 (21%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAKAGDLAALLT 101
           + FVGPPG+GKT++ + +AR L   F   S                 V A  G +   L 
Sbjct: 580 ICFVGPPGVGKTSIGKSIARALNRKFYRFSVGGLTDVAEIKGHRRTYVGAIPGRMVQALK 639

Query: 102 NLEDRDVL-FIDEIHRLSIIVE-----------EILYPAMEDFQLDLMVGEGPSARSVKI 149
           N E  + L  IDEI ++S               E+L P      +D  +        V I
Sbjct: 640 NTETENPLVLIDEIDKISHTHHGSGGDPSAALLELLDPEQNGTFMDYYM-------DVPI 692

Query: 150 NLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           NLSR   +     +  +  PL DR  +     + E E +K
Sbjct: 693 NLSRVLFVCTANTLSTIPAPLLDRMEVIEIAGYVEDEKIK 732


>gi|15674261|ref|NP_268434.1| putative cell division protein [Streptococcus pyogenes M1 GAS]
 gi|71909827|ref|YP_281377.1| cell division protein [Streptococcus pyogenes MGAS5005]
 gi|13621337|gb|AAK33156.1| putative cell division protein [Streptococcus pyogenes M1 GAS]
 gi|71852609|gb|AAZ50632.1| cell division protein [Streptococcus pyogenes MGAS5005]
          Length = 659

 Score = 42.7 bits (99), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLE--DRDV 108
           VL  GPPG GKT LA+ VA E GV F S SG       V   A  + +L  + +  +R +
Sbjct: 223 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRSLFEDAKKAERAI 282

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 283 IFIDEI 288


>gi|327313952|ref|YP_004329389.1| ATP-dependent metallopeptidase HflB [Prevotella denticola F0289]
 gi|326944304|gb|AEA20189.1| ATP-dependent metallopeptidase HflB [Prevotella denticola F0289]
          Length = 665

 Score = 42.7 bits (99), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 67/264 (25%), Positives = 109/264 (41%), Gaps = 51/264 (19%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ  A   ++  +E  K   +  D         L +GPPG GKT LA+ VA E 
Sbjct: 179 TFKDVAGQTGAKQEVQEIVEFLKNPKKYTDLGGKIPKGALLIGPPGTGKTLLAKAVAGEA 238

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG       V   A  +  +    +++   ++FIDEI  +     +   PAM 
Sbjct: 239 GVPFFSMSGSDFVEMFVGVGASRVRDVFRQAKEKSPCIIFIDEIDAVGRARSK--NPAM- 295

Query: 131 DFQLDLMVGEGPSARSVKINL-----------SRFTLIAATTRVGLLTNPL--QDRFGIP 177
                     G   R   +N            S   ++AAT RV +L   L    RF   
Sbjct: 296 ---------GGNDERENTLNALLTEMDGFGTNSGVIVLAATNRVDMLDKALLRAGRFDRQ 346

Query: 178 IRLNFYEIEDLKTIV---QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
           I ++  ++ + K I     R  KL       E   +I + +R TP  +G  +  V + A 
Sbjct: 347 IHVDLPDLTERKAIFLVHMRPLKL-------EKNLDIDLLARQTPGFSGADIANVCNEAA 399

Query: 235 VAHAKTITREIADAALLRLAIDKM 258
           +  A+  +++++    L  A+D++
Sbjct: 400 LIAARHNSKDVSKQDFLD-AVDRI 422


>gi|288904238|ref|YP_003429459.1| cell-division protein FtsH [Streptococcus gallolyticus UCN34]
 gi|306832498|ref|ZP_07465650.1| cell division protein FtsH [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325977215|ref|YP_004286931.1| cell division protein FtsH [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|288730963|emb|CBI12507.1| cell-division protein FtsH [Streptococcus gallolyticus UCN34]
 gi|304425398|gb|EFM28518.1| cell division protein FtsH [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325177143|emb|CBZ47187.1| cell division protein FtsH [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 660

 Score = 42.7 bits (99), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLE--DRDV 108
           VL  GPPG GKT LA+ VA E GV F S SG       V   A  + +L  + +  +R +
Sbjct: 223 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRSLFEDAKKAERAI 282

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 283 IFIDEI 288


>gi|171778210|ref|ZP_02919439.1| hypothetical protein STRINF_00278 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171283034|gb|EDT48458.1| hypothetical protein STRINF_00278 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 657

 Score = 42.7 bits (99), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLE--DRDV 108
           VL  GPPG GKT LA+ VA E GV F S SG       V   A  + +L  + +  +R +
Sbjct: 223 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRSLFEDAKKAERAI 282

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 283 IFIDEI 288


>gi|124360532|gb|ABN08542.1| AAA ATPase, central region; L-lactate dehydrogenase [Medicago
           truncatula]
          Length = 924

 Score = 42.7 bits (99), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E  +NF S  GP
Sbjct: 678 VLLYGPPGTGKTLLAKAVATECSLNFLSVKGP 709


>gi|21592745|gb|AAM64694.1| cell division protein FtsH-like protein [Arabidopsis thaliana]
          Length = 622

 Score = 42.7 bits (99), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 43/89 (48%), Gaps = 8/89 (8%)

Query: 34  VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK- 92
           VE  S L+  I   K  A     VL VGPPG GKT LA+ VA E GV F S S     + 
Sbjct: 347 VEIVSCLQGSINYKKLGARLPRGVLLVGPPGTGKTLLARAVAGEAGVPFFSVSASEFVEL 406

Query: 93  -AGDLAALLTNL------EDRDVLFIDEI 114
             G  AA + +L          ++FIDE+
Sbjct: 407 FVGRGAARIRDLFNAARKNSPSIIFIDEL 435


>gi|325577259|ref|ZP_08147743.1| ATP-dependent Clp protease ATP-binding subunit [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325160841|gb|EGC72962.1| ATP-dependent Clp protease ATP-binding subunit [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 412

 Score = 42.7 bits (99), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD--------LAALLTNLE--- 104
           ++L +GP G GKT LAQ +AR L V F       + +AG         L  LL N +   
Sbjct: 111 NILLIGPTGSGKTLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVLQKLLQNCDYDT 170

Query: 105 ---DRDVLFIDEIHRLS 118
              ++ +++IDEI ++S
Sbjct: 171 EKAEQGIIYIDEIDKIS 187


>gi|322412929|gb|EFY03836.1| cell division protein [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 661

 Score = 42.7 bits (99), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLE--DRDV 108
           VL  GPPG GKT LA+ VA E GV F S SG       V   A  + +L  + +  +R +
Sbjct: 223 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRSLFEDAKKAERAI 282

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 283 IFIDEI 288


>gi|313836729|gb|EFS74443.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL037PA2]
 gi|314929865|gb|EFS93696.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL044PA1]
 gi|314972292|gb|EFT16389.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL037PA3]
 gi|328907722|gb|EGG27486.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium sp. P08]
          Length = 430

 Score = 42.7 bits (99), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 59/135 (43%), Gaps = 37/135 (27%)

Query: 21  LLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAE-ALD-----------------HV 57
           L RPR L +F      GQ EA   L V +     R + A+D                 ++
Sbjct: 62  LPRPRELCDFLDAWVIGQEEAKRTLSVAVYNHYKRIQSAVDVPHARRAEDDGVELGKSNI 121

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------------- 103
           L +GP G GKT LAQ +AR+L V F       + +AG +   + N+              
Sbjct: 122 LLLGPTGCGKTYLAQTMARQLNVPFAMADATALTEAGYVGEDVENILLKLLQAADFDVKR 181

Query: 104 EDRDVLFIDEIHRLS 118
            +R +++IDEI +++
Sbjct: 182 AERGIVYIDEIDKVA 196


>gi|302795442|ref|XP_002979484.1| hypothetical protein SELMODRAFT_111106 [Selaginella moellendorffii]
 gi|300152732|gb|EFJ19373.1| hypothetical protein SELMODRAFT_111106 [Selaginella moellendorffii]
          Length = 788

 Score = 42.7 bits (99), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 8/71 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ VA  +  NF S  GP +     G+    +  + D+       V
Sbjct: 509 VLFYGPPGCGKTLLAKAVATMIHCNFISIKGPELLSKYLGESEGNVREVFDKARASAPCV 568

Query: 109 LFIDEIHRLSI 119
           LF DE+  ++I
Sbjct: 569 LFFDELDSIAI 579



 Score = 38.1 bits (87), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT +A+ VA E G  F   +GP I
Sbjct: 236 ILLFGPPGTGKTMIARAVANETGAFFTVINGPEI 269


>gi|297562256|ref|YP_003681230.1| ATPase AAA [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
 gi|296846704|gb|ADH68724.1| AAA ATPase central domain protein [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 823

 Score = 42.7 bits (99), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 80/181 (44%), Gaps = 44/181 (24%)

Query: 54  LDHVLFVGPPGLGKTTLAQVVAR---ELGVNFRSTSGPVIAKAGDL-------AALLTN- 102
           + H +F GPPG GKTT+A+V+ R    LG+  R+    V A+  DL        A+ TN 
Sbjct: 589 MRHFVFSGPPGTGKTTVARVLGRVFAALGLLGRADV--VEAQRADLVGEHLGATAVKTNR 646

Query: 103 LEDR---DVLFIDEIHRL------------SIIVEEILYPAMEDFQLDLMVGEGPSARSV 147
           L DR    VLF+DE + L            S  ++ +L  A +D    ++V  G  A   
Sbjct: 647 LVDRALGGVLFVDEAYSLVNPGYSGGDAFGSEAIQTLLKRAEDDRSRLVVVLAGYPA--- 703

Query: 148 KINLSRFTLIAATTRVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDE 206
              + RF          L +N  L  RF + +R   Y  ++L  I +  A  TG A  D 
Sbjct: 704 --EMERF----------LASNAGLSSRFNVRVRFPSYTADELTEIAETVAARTGDAFDDT 751

Query: 207 A 207
           A
Sbjct: 752 A 752



 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 41/97 (42%), Positives = 50/97 (51%), Gaps = 27/97 (27%)

Query: 44  IEAAKARAEA-------LDHVLFVGPPGLGKTTLAQVVARELGVNFRS-----TSGPVIA 91
           IEAA+ RA+A       L H++F GPPG GKT+    VAR L   F S     TS  V A
Sbjct: 277 IEAARLRADAGFPVERPLRHLVFSGPPGTGKTS----VARTLATIFHSFGLLPTSRVVEA 332

Query: 92  KAGDL-------AALLTN-LEDR---DVLFIDEIHRL 117
           +  DL        A+ TN L DR    VLF+DE + L
Sbjct: 333 QRADLVGEYLGATAIRTNELIDRALGGVLFVDEAYSL 369


>gi|227831447|ref|YP_002833227.1| AAA ATPase central domain protein [Sulfolobus islandicus L.S.2.15]
 gi|227457895|gb|ACP36582.1| AAA ATPase central domain protein [Sulfolobus islandicus L.S.2.15]
          Length = 585

 Score = 42.7 bits (99), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAA-------LLTNLEDRD-V 108
           +L  GPPG GKT++A+ +A +L  NF   SG  ++ AG L A           L++   +
Sbjct: 362 ILLYGPPGTGKTSIAKALANDLRFNFIELSGEEVSSAGPLDAPKIIAEKFYVALDNAPAI 421

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 422 IFIDEI 427



 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 8/71 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELG-VNFRSTSGPVIAKA-GDLAALLTNLEDR------DV 108
           V+  GPPG GKTT+A+ +A +LG V F      +++K  G+   LL N  D+       V
Sbjct: 95  VILFGPPGTGKTTIAKALANKLGWVYFELRPSKILSKWYGESELLLDNFFDQVEMNTPAV 154

Query: 109 LFIDEIHRLSI 119
           +FIDE+  L++
Sbjct: 155 VFIDELDSLAM 165


>gi|254520640|ref|ZP_05132696.1| ATP-dependent metalloprotease FtsH [Clostridium sp. 7_2_43FAA]
 gi|226914389|gb|EEH99590.1| ATP-dependent metalloprotease FtsH [Clostridium sp. 7_2_43FAA]
          Length = 638

 Score = 42.7 bits (99), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 53/107 (49%), Gaps = 15/107 (14%)

Query: 26  TLEEFTGQVEACSNLKVFIE----AAKAR---AEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ EA  +LK  I+    A+K     A+     L VGPPG GKT LA+ VA E 
Sbjct: 170 TFDDVAGQDEAKESLKEIIDYLNNASKYTEIGAKLPKGALLVGPPGTGKTLLAKAVAGEA 229

Query: 79  GVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEIHRL 117
            V F S SG    +  AG  AA + +L          ++FIDE+  +
Sbjct: 230 NVPFLSISGSNFVEMFAGMGAAKVRDLFQEAEKNAPCIIFIDEVDSI 276


>gi|254519653|ref|ZP_05131709.1| transcriptional regulator [Clostridium sp. 7_2_43FAA]
 gi|226913402|gb|EEH98603.1| transcriptional regulator [Clostridium sp. 7_2_43FAA]
          Length = 891

 Score = 42.7 bits (99), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 78/188 (41%), Gaps = 46/188 (24%)

Query: 14  QEDADISLLRPRTLEE----------FTGQVEACSNLKVFIEAAKARAEALDH---VLFV 60
           QED  I+ ++ +  E+          F   V    +L+V +E AKA      H   VL +
Sbjct: 98  QEDDYINAIKDKKTEDIKDFHEQKDFFKEVVGYNGSLRVQVEQAKAAVSYPPHGLHVLIL 157

Query: 61  GPPGLGKTTLAQVVAR--ELGVNFRSTSGPVIAKAGDLAA----LLTNL----------- 103
           GP G+GK+ LA  +    +   NF   +  +I    D A     LL+ L           
Sbjct: 158 GPSGVGKSYLADAMYEFAKSTSNFSEDAKYIIFNCADYADNPQLLLSQLFGSVKGAYTGA 217

Query: 104 ----------EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSR 153
                      D  +LF+DEIHRL    +EIL+  + D  +   +GE  + R      S 
Sbjct: 218 TENKMGIVEACDGGILFLDEIHRLPSEGQEILFSIL-DKGIFRRLGESETVRK-----SN 271

Query: 154 FTLIAATT 161
             +IAATT
Sbjct: 272 VMIIAATT 279


>gi|225075808|ref|ZP_03719007.1| hypothetical protein NEIFLAOT_00824 [Neisseria flavescens
           NRL30031/H210]
 gi|224952841|gb|EEG34050.1| hypothetical protein NEIFLAOT_00824 [Neisseria flavescens
           NRL30031/H210]
          Length = 421

 Score = 42.7 bits (99), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +AR+L V F       + +AG    D+  ++T L        
Sbjct: 115 NILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDV 174

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 175 EKAQRGIVYIDEIDKIS 191


>gi|255550758|ref|XP_002516427.1| Protein YME1, putative [Ricinus communis]
 gi|223544247|gb|EEF45768.1| Protein YME1, putative [Ricinus communis]
          Length = 716

 Score = 42.7 bits (99), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ +A E GV F S SG       V   A  +  L +  + R   +
Sbjct: 260 VLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCI 319

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 320 IFIDEI 325


>gi|219109832|ref|XP_002176669.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217411204|gb|EEC51132.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 350

 Score = 42.7 bits (99), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP++L+E + Q E  + L+  +   +     L H+L  GPPG GKT++A  + R+L
Sbjct: 23 RPKSLQEVSHQTEVVATLQNAVTTGR-----LPHLLLYGPPGSGKTSVALALCRQL 73


>gi|229580369|ref|YP_002838769.1| AAA ATPase central domain protein [Sulfolobus islandicus Y.G.57.14]
 gi|229580996|ref|YP_002839395.1| AAA ATPase central domain protein [Sulfolobus islandicus Y.N.15.51]
 gi|228011085|gb|ACP46847.1| AAA ATPase central domain protein [Sulfolobus islandicus Y.G.57.14]
 gi|228011712|gb|ACP47473.1| AAA ATPase central domain protein [Sulfolobus islandicus Y.N.15.51]
          Length = 585

 Score = 42.7 bits (99), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAA-------LLTNLEDRD-V 108
           +L  GPPG GKT++A+ +A +L  NF   SG  ++ AG L A           L++   +
Sbjct: 362 ILLYGPPGTGKTSIAKALANDLRFNFIELSGEEVSSAGPLDAPKIIAEKFYVALDNAPAI 421

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 422 IFIDEI 427



 Score = 40.0 bits (92), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 8/71 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELG-VNFRSTSGPVIAKA-GDLAALLTNLEDR------DV 108
           V+  GPPG GKTT+A+ +A +LG   F      +++K  G+   LL N  D+       V
Sbjct: 95  VILFGPPGTGKTTIAKALANKLGWAYFELRPSKILSKWYGESELLLDNFFDQVEMNTPAV 154

Query: 109 LFIDEIHRLSI 119
           +FIDE+  L++
Sbjct: 155 VFIDELDSLAM 165


>gi|149178953|ref|ZP_01857530.1| cell division protein FtsH [Planctomyces maris DSM 8797]
 gi|148842227|gb|EDL56613.1| cell division protein FtsH [Planctomyces maris DSM 8797]
          Length = 685

 Score = 42.7 bits (99), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 43/85 (50%), Gaps = 13/85 (15%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAK--ARAEAL-----DHVLFVGP 62
           R  +Q+D ++      T  +  G  EA   L+  +E  +  A+ +AL       VL VGP
Sbjct: 188 RMYAQDDIEV------TFNDVAGIDEAVEELREVVEFLRTPAKYQALGGRIPKGVLLVGP 241

Query: 63  PGLGKTTLAQVVARELGVNFRSTSG 87
           PG GKT LA+ VA E GV F   SG
Sbjct: 242 PGTGKTMLAKAVAGEAGVPFYGLSG 266


>gi|146090753|ref|XP_001466340.1| vesicular transport protein (CDC48 homologue) [Leishmania infantum
           JPCM5]
 gi|134070702|emb|CAM69054.1| putative vesicular transport protein (CDC48 homologue) [Leishmania
           infantum JPCM5]
 gi|322500176|emb|CBZ35252.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 666

 Score = 42.7 bits (99), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 20/39 (51%), Positives = 24/39 (61%), Gaps = 3/39 (7%)

Query: 53  ALDH---VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
            LDH   VL  GPPG GKT +A+ +A + G NF S  GP
Sbjct: 403 GLDHPVGVLLYGPPGCGKTLVAKAIANQSGANFISIKGP 441



 Score = 37.0 bits (84), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 32/66 (48%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL------EDRDV 108
           VL  GPPG+GKT L   +A  L V     + P I    +GD  A L NL          +
Sbjct: 130 VLLHGPPGVGKTKLVHAIAGSLQVPLFFVAAPEIVSGISGDSEAKLRNLFMDAIAAAPSI 189

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 190 VFIDEI 195


>gi|24378545|ref|NP_720500.1| putative cell division protein FtsH [Streptococcus mutans UA159]
 gi|24376393|gb|AAN57806.1|AE014853_13 putative cell division protein FtsH [Streptococcus mutans UA159]
          Length = 656

 Score = 42.7 bits (99), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLE--DRDV 108
           VL  GPPG GKT LA+ VA E GV F S SG       V   A  + +L  + +  +R +
Sbjct: 222 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRSLFEDAKKAERAI 281

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 282 IFIDEI 287


>gi|19745212|ref|NP_606348.1| cell division protein [Streptococcus pyogenes MGAS8232]
 gi|21909548|ref|NP_663816.1| putative cell division protein [Streptococcus pyogenes MGAS315]
 gi|28894925|ref|NP_801275.1| cell division protein [Streptococcus pyogenes SSI-1]
 gi|50913359|ref|YP_059331.1| cell division protein ftsH [Streptococcus pyogenes MGAS10394]
 gi|94989522|ref|YP_597622.1| cell division protein ftsH [Streptococcus pyogenes MGAS10270]
 gi|94993409|ref|YP_601507.1| cell division protein ftsH [Streptococcus pyogenes MGAS10750]
 gi|139472901|ref|YP_001127616.1| cell division protease FtsH [Streptococcus pyogenes str. Manfredo]
 gi|209558599|ref|YP_002285071.1| Cell division protein ftsH [Streptococcus pyogenes NZ131]
 gi|306826398|ref|ZP_07459712.1| cell division protein FtsH [Streptococcus pyogenes ATCC 10782]
 gi|19747301|gb|AAL96847.1| putative cell division protein [Streptococcus pyogenes MGAS8232]
 gi|21903728|gb|AAM78619.1| putative cell division protein [Streptococcus pyogenes MGAS315]
 gi|28810170|dbj|BAC63108.1| putative cell division protein [Streptococcus pyogenes SSI-1]
 gi|50902433|gb|AAT86148.1| Cell division protein ftsH [Streptococcus pyogenes MGAS10394]
 gi|94543030|gb|ABF33078.1| Cell division protein ftsH [Streptococcus pyogenes MGAS10270]
 gi|94546917|gb|ABF36963.1| Cell division protein ftsH [Streptococcus pyogenes MGAS10750]
 gi|134271147|emb|CAM29357.1| putative cell division protease FtsH [Streptococcus pyogenes str.
           Manfredo]
 gi|209539800|gb|ACI60376.1| Cell division protein ftsH [Streptococcus pyogenes NZ131]
 gi|304431393|gb|EFM34388.1| cell division protein FtsH [Streptococcus pyogenes ATCC 10782]
          Length = 659

 Score = 42.7 bits (99), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLE--DRDV 108
           VL  GPPG GKT LA+ VA E GV F S SG       V   A  + +L  + +  +R +
Sbjct: 223 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRSLFEDAKKAERAI 282

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 283 IFIDEI 288


>gi|71653872|ref|XP_815566.1| mitochondrial ATP-dependent zinc metallopeptidase [Trypanosoma
           cruzi strain CL Brener]
 gi|70880630|gb|EAN93715.1| mitochondrial ATP-dependent zinc metallopeptidase, putative
           [Trypanosoma cruzi]
          Length = 657

 Score = 42.7 bits (99), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 18/30 (60%), Positives = 22/30 (73%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           L VGPPG GKT LA+ +A+E GVNF   +G
Sbjct: 223 LLVGPPGCGKTMLAKAIAKEAGVNFFYATG 252


>gi|326389728|ref|ZP_08211293.1| PTS system transcriptional activator [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325994210|gb|EGD52637.1| PTS system transcriptional activator [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 880

 Score = 42.7 bits (99), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 59/134 (44%), Gaps = 35/134 (26%)

Query: 56  HVLFVGPPGLGKTTLAQVVAR---ELGVNFRSTSGPVIAKAGDLAA----LLTNL----- 103
           H L VGP G+GKTT A+ + +   ++G+     S  V+    D A     LL+ L     
Sbjct: 163 HTLIVGPTGVGKTTFAEAMYKYAVQIGI-LHEKSPFVVFNCADYAENPQLLLSQLFGYVK 221

Query: 104 ----------------EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSV 147
                            D  +LF+DE+HRL    +E+L+  M+      M GE  + R  
Sbjct: 222 GAFTGADKEKRGLVDEADGGILFLDEVHRLPPEGQEMLFTLMDKGMYRRM-GESENTRKA 280

Query: 148 KINLSRFTLIAATT 161
           K+      +IAATT
Sbjct: 281 KVR-----IIAATT 289


>gi|261365228|ref|ZP_05978111.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           mucosa ATCC 25996]
 gi|288566311|gb|EFC87871.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           mucosa ATCC 25996]
          Length = 422

 Score = 42.7 bits (99), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +AR+L V F       + +AG    D+  ++T L        
Sbjct: 113 NILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDV 172

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 173 EKAQRGIVYIDEIDKIS 189


>gi|188585730|ref|YP_001917275.1| ATP-dependent protease LonB [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179350417|gb|ACB84687.1| ATP-dependent protease LonB [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 537

 Score = 42.7 bits (99), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 5/65 (7%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  +E  GQ E    L+  +     +     HV+  GPPG+GKT  A+VV  E   N 
Sbjct: 65  RPQKFQEIVGQKEGLKALRAALCGPNPQ-----HVIIYGPPGIGKTAAARVVLEEAKNNP 119

Query: 83  RSTSG 87
           RS  G
Sbjct: 120 RSPFG 124


>gi|168023880|ref|XP_001764465.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162684329|gb|EDQ70732.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 934

 Score = 42.7 bits (99), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E  +NF S  GP
Sbjct: 685 VLLYGPPGTGKTLLAKAVATECALNFLSVKGP 716


>gi|154313201|ref|XP_001555927.1| hypothetical protein BC1G_05602 [Botryotinia fuckeliana B05.10]
 gi|150849687|gb|EDN24880.1| hypothetical protein BC1G_05602 [Botryotinia fuckeliana B05.10]
          Length = 390

 Score = 42.7 bits (99), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 5/56 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           RP TLE+ +G  +  + +  F++  +     L H+LF GPPG GKT+    +AR +
Sbjct: 53  RPDTLEDVSGHQDILATINKFVDTNR-----LPHLLFYGPPGTGKTSTILALARRI 103


>gi|85118512|ref|XP_965460.1| activator 1 41 kDa subunit [Neurospora crassa OR74A]
 gi|28927269|gb|EAA36224.1| activator 1 41 kDa subunit [Neurospora crassa OR74A]
          Length = 387

 Score = 42.7 bits (99), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 5/60 (8%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          +   RP+TL + T Q    + L+  ++A+      L H+LF GPPG GKT+    +A+EL
Sbjct: 35 VEKYRPKTLSDVTAQDHTITVLQRTLQASN-----LPHMLFYGPPGTGKTSTILALAKEL 89


>gi|322492922|emb|CBZ28203.1| vesicular transport protein (CDC48 homologue),putative [Leishmania
           mexicana MHOM/GT/2001/U1103]
          Length = 666

 Score = 42.4 bits (98), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 20/39 (51%), Positives = 24/39 (61%), Gaps = 3/39 (7%)

Query: 53  ALDH---VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
            LDH   VL  GPPG GKT +A+ +A + G NF S  GP
Sbjct: 403 GLDHPVGVLLYGPPGCGKTLVAKAIANQSGANFISIKGP 441



 Score = 38.1 bits (87), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 32/66 (48%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL------EDRDV 108
           VL  GPPG+GKT L   +A  L V     S P I    +GD  A L NL          +
Sbjct: 130 VLLHGPPGVGKTKLVHAIAGSLQVPLFFVSAPEIVSGISGDSEAKLRNLFMDAIAAAPSI 189

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 190 VFIDEI 195


>gi|320590805|gb|EFX03248.1| mitochondrial serine protease [Grosmannia clavigera kw1407]
          Length = 1161

 Score = 42.4 bits (98), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 74/179 (41%), Gaps = 37/179 (20%)

Query: 43  FIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNF------------------R 83
           FI   K R      +L FVGPPG+GKT++ + +AR L   +                  R
Sbjct: 618 FIAVGKLRGTVEGKILCFVGPPGVGKTSIGKSIARALNRQYYRFSVGGLTDVAEIKGHRR 677

Query: 84  STSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL--------SIIVEEILYPAMEDFQLD 135
           +  G +  +   + AL     +  ++ IDEI ++        S  + E+L P      LD
Sbjct: 678 TYVGALPGRV--IQALKKCQTENPLILIDEIDKIGKGYQGDPSSALLELLDPEQNSSFLD 735

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
             +        V ++LS+   +        +  PL DR  + IRL+ Y  ++ + I +R
Sbjct: 736 HYM-------DVPVDLSKVLFVCTANMTDTIPRPLLDRMEV-IRLSGYVSDEKRAIAER 786


>gi|320583837|gb|EFW98050.1| mitochondrial Lon protease [Pichia angusta DL-1]
          Length = 1108

 Score = 42.4 bits (98), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 62/160 (38%), Gaps = 34/160 (21%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAKAGDLAALLT 101
           + FVGPPG+GKT++ + +AR L   F   S                 V A  G +   L 
Sbjct: 585 ICFVGPPGVGKTSIGKSIARALNRKFYRFSVGGLTDVAEIKGHRRTYVGAIPGRMVQALK 644

Query: 102 NLEDRDVL-FIDEIHRLSIIVE-----------EILYPAMEDFQLDLMVGEGPSARSVKI 149
           N E  + L  IDEI ++S               E+L P      +D  +        V I
Sbjct: 645 NTETENPLVLIDEIDKISHTHHGSGGDPSAALLELLDPEQNGTFMDYYM-------DVPI 697

Query: 150 NLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           NLSR   +     +  +  PL DR  +     + E E +K
Sbjct: 698 NLSRVLFVCTANTLSTIPAPLLDRMEVIEIAGYVEDEKIK 737


>gi|307189842|gb|EFN74107.1| ATPase WRNIP1 [Camponotus floridanus]
          Length = 400

 Score = 42.4 bits (98), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 19/103 (18%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPV-IAKAGDLAALLTNLED---------- 105
           ++F GPPG GKT+L +++A    ++ + TS  V I     +++ + N+ D          
Sbjct: 34  MIFWGPPGCGKTSLTKIIA---CLSNKITSNNVHIVNLSAVSSGVKNIRDAVTTAKNKSK 90

Query: 106 ---RDVLFIDEIHRLSIIVEEILYPAME--DFQLDLMVGEGPS 143
              + ++F+DEIH  + + ++I  P +E   F L     E PS
Sbjct: 91  FGCKTIVFMDEIHCFNKLQQDIFLPHVEAGTFTLIGCTTENPS 133


>gi|297565860|ref|YP_003684832.1| ATPase [Meiothermus silvanus DSM 9946]
 gi|296850309|gb|ADH63324.1| ATPase associated with various cellular activities AAA_3
           [Meiothermus silvanus DSM 9946]
          Length = 309

 Score = 42.4 bits (98), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 93/227 (40%), Gaps = 57/227 (25%)

Query: 37  CSNLKVFI----EAAKARAEAL---DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPV 89
           C+N++  +    E  KA    L    HVL    PG GKTTLA+ +A+ LG+ FR      
Sbjct: 10  CANIEQAVVGKHEEVKAVVATLLSGGHVLLEDVPGTGKTTLARALAKSLGLEFRRVQFTP 69

Query: 90  IAKAGDLAALLTNLED----------RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
                DL  +   L              +L  DE++R +   +  L  AM++ Q+ L   
Sbjct: 70  DLLPSDLTGVYIYLNGAFEFRPGPLFAGLLLADELNRATPKTQSALLEAMQEGQVTLEGQ 129

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQ------------DRFGIPIRLNFYEIED 187
             P        L R  L+ AT       NP++            DRF   I+L +   ED
Sbjct: 130 THP--------LPRPFLVIAT------QNPIEQEGTYRLPEAQLDRFTARIKLGYPAEED 175

Query: 188 LKTIVQRGAKLTGL----AVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
            + +++R  + + L     VTD  A E+          A RL+R+VR
Sbjct: 176 ERVMLRRMRQKSPLEELEPVTD--AAEVLQ--------AQRLVRQVR 212


>gi|157273412|gb|ABV27311.1| cell division protein FtsH [Candidatus Chloracidobacterium
           thermophilum]
          Length = 618

 Score = 42.4 bits (98), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 37/101 (36%), Positives = 51/101 (50%), Gaps = 9/101 (8%)

Query: 27  LEEFTGQVEACSN-LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRST 85
           ++E   ++E   N LK   E  +  A     VL VGPPG GKT LA+ VA E GV F S 
Sbjct: 162 VDEAKAELEEVVNFLKAPQEYGRLGARIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSI 221

Query: 86  SGPVIAK--AGDLAALLTNLEDR------DVLFIDEIHRLS 118
           SG    +   G  AA + +L ++       ++FIDE+  L 
Sbjct: 222 SGSEFIEMFVGVGAARVRDLFEQARAHAPAIIFIDELDALG 262


>gi|21226549|ref|NP_632471.1| cell division control protein [Methanosarcina mazei Go1]
 gi|20904821|gb|AAM30143.1| Cell division control protein [Methanosarcina mazei Go1]
          Length = 792

 Score = 42.4 bits (98), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT +AQ VA+E   NF S  GP
Sbjct: 552 ILLYGPPGTGKTLIAQAVAKESNANFISVKGP 583



 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 47/109 (43%), Gaps = 16/109 (14%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
           T E+  G  +    ++  IE      E   H        V+  GPPG GKT +A+ VA E
Sbjct: 196 TYEDIGGLGDEIMRVREMIEMPMKHPELFAHLNIEPPKGVILYGPPGTGKTLIAKAVANE 255

Query: 78  LGVNFRSTSGPVIAKA--GDLAALLTNL------EDRDVLFIDEIHRLS 118
            G +F   +GP I     G+    L  +      E   V+FIDEI  ++
Sbjct: 256 SGASFHYIAGPEIVGKFYGESEERLRKIFEEATQEAPSVIFIDEIDSIA 304


>gi|71665863|ref|XP_819897.1| mitochondrial ATP-dependent zinc metallopeptidase [Trypanosoma
           cruzi strain CL Brener]
 gi|70885218|gb|EAN98046.1| mitochondrial ATP-dependent zinc metallopeptidase, putative
           [Trypanosoma cruzi]
          Length = 657

 Score = 42.4 bits (98), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 18/30 (60%), Positives = 22/30 (73%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           L VGPPG GKT LA+ +A+E GVNF   +G
Sbjct: 223 LLVGPPGCGKTMLAKAIAKEAGVNFFYATG 252


>gi|332704382|ref|ZP_08424470.1| ATP-dependent metalloprotease FtsH [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332554531|gb|EGJ51575.1| ATP-dependent metalloprotease FtsH [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 671

 Score = 42.4 bits (98), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 92/210 (43%), Gaps = 38/210 (18%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL VGPPG GKT LA+ VA E GV F S SG    +   G  AA + +L  +       +
Sbjct: 191 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGAARVRDLFVQGKKNAPCL 250

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN-----LSRFT------LI 157
           +FIDEI  +               Q    +G G   R   +N     +  F       LI
Sbjct: 251 IFIDEIDAVG-------------RQRGAGLGGGHDEREQTLNQLLVEMDGFESNEGVILI 297

Query: 158 AATTRVGLLTNPL--QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRS 215
           AAT R  +L   L    RF   + +   ++   K I++  A+ T L+    +  ++ + +
Sbjct: 298 AATNRPDVLDPALLRPGRFDRQVVVPTPDVRGRKRILEVHARRTPLS----SEVDLGVIA 353

Query: 216 RGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           RGTP  +G  L  + + A +  AKT   ++
Sbjct: 354 RGTPGFSGADLENLVNEAALHAAKTNKTQV 383


>gi|328856311|gb|EGG05433.1| putative peroxisomal biogenesis factor 6 [Melampsora
           larici-populina 98AG31]
          Length = 871

 Score = 42.4 bits (98), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 4/48 (8%)

Query: 41  KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           ++F    K R+     +L  GPPG GKT +A+ VA  +G+NF S  GP
Sbjct: 526 ELFANGLKKRS----GILLFGPPGTGKTLIAKAVATSIGMNFMSVKGP 569


>gi|312137192|ref|YP_004004529.1| ATPase AAA [Methanothermus fervidus DSM 2088]
 gi|311224911|gb|ADP77767.1| AAA family ATPase, CDC48 subfamily [Methanothermus fervidus DSM
           2088]
          Length = 732

 Score = 42.4 bits (98), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 50/115 (43%), Gaps = 16/115 (13%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
           T E+  G  EA   ++  IE      E  +         VL  GPPG GKT LA+ VA E
Sbjct: 202 TYEDIGGMKEAIQKVREMIEIPLKNPELFERLGIEPPKGVLLHGPPGTGKTLLAKAVANE 261

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEI 124
              +F + +GP I           L  +    E+    ++FIDEI  ++   EE+
Sbjct: 262 SDAHFIAINGPEIMSKYVGGSEERLREIFKEAEENAPSIIFIDEIDAIAPKREEV 316



 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E G NF +  GP
Sbjct: 513 VLLYGPPGTGKTLLAKAVANESGANFIAIKGP 544


>gi|307594463|ref|YP_003900780.1| TIP49 domain-containing protein [Vulcanisaeta distributa DSM
          14429]
 gi|307549664|gb|ADN49729.1| TIP49 domain protein [Vulcanisaeta distributa DSM 14429]
          Length = 451

 Score = 42.4 bits (98), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 28/50 (56%)

Query: 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
          F GQVEA       ++  +A       VL VGPPG GKT LA  +ARELG
Sbjct: 39 FVGQVEAREAAYYVVKMIRAGKFGGKGVLIVGPPGTGKTALAIGIARELG 88


>gi|289522162|ref|ZP_06439016.1| replication-associated recombination protein A [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503998|gb|EFD25162.1| replication-associated recombination protein A [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 448

 Score = 42.4 bits (98), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 65/144 (45%), Gaps = 18/144 (12%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP  LE+F GQ         L+  +EA +     +   +  GPPG GKTTL + +A   
Sbjct: 36  MRPAKLEDFVGQEHLLGKDKPLRRLLEAGQ-----VPSCILYGPPGSGKTTLVRAMASVT 90

Query: 79  GVNFRSTSGPV--IAKAGDLAALLTNLE----DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           G      +     +A+  D+     NL+       ++FIDEI+  +   +  L P++E  
Sbjct: 91  GRKLFEINAVTAKVAQLRDVVDTARNLKRSTGKSAIVFIDEIYHFNKQQQNALLPSVERG 150

Query: 133 QLDLMVG---EGPSARSVKINLSR 153
            L ++VG   E P     K  LSR
Sbjct: 151 DL-ILVGTTTENPYFEINKTLLSR 173


>gi|302405545|ref|XP_003000609.1| mitochondrial chaperone BCS1 [Verticillium albo-atrum VaMs.102]
 gi|261360566|gb|EEY22994.1| mitochondrial chaperone BCS1 [Verticillium albo-atrum VaMs.102]
          Length = 497

 Score = 42.4 bits (98), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 32/57 (56%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEI 114
           LF GPPG GK++L+  +A E G++      P +A   DL  +   +  R V+ +++I
Sbjct: 267 LFYGPPGTGKSSLSVALAGEFGLDLYEVKIPSVATDADLEQMFQEVPPRCVVLLEDI 323


>gi|253721988|gb|ACT34058.1| FtsH4 [Aegilops tauschii]
          Length = 709

 Score = 42.4 bits (98), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ +A E GV F S SG       V   A  +  L +  + R   +
Sbjct: 250 VLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCI 309

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 310 IFIDEI 315


>gi|251781483|ref|YP_002995784.1| cell division protein [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242390111|dbj|BAH80570.1| cell division protein [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 661

 Score = 42.4 bits (98), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLE--DRDV 108
           VL  GPPG GKT LA+ VA E GV F S SG       V   A  + +L  + +  +R +
Sbjct: 223 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRSLFEDAKKAERAI 282

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 283 IFIDEI 288


>gi|242006563|ref|XP_002424119.1| transitional endoplasmic reticulum ATPase, putative [Pediculus
           humanus corporis]
 gi|212507436|gb|EEB11381.1| transitional endoplasmic reticulum ATPase, putative [Pediculus
           humanus corporis]
          Length = 717

 Score = 42.4 bits (98), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ +A E    F S  GP
Sbjct: 478 VLFYGPPGTGKTLLAKAIATECNYTFLSVKGP 509


>gi|220929967|ref|YP_002506876.1| ATP-dependent protease La [Clostridium cellulolyticum H10]
 gi|220000295|gb|ACL76896.1| ATP-dependent protease La [Clostridium cellulolyticum H10]
          Length = 779

 Score = 42.4 bits (98), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 64/269 (23%), Positives = 107/269 (39%), Gaps = 47/269 (17%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF------------------RSTSGPVIAKAGDLAA 98
           +  VGPPG+GKT++A+ +A+ L  N+                  R+  G +  +   ++A
Sbjct: 355 LCLVGPPGVGKTSIAKSIAKALNRNYVRISLGGVKDESEIRGHRRTYVGSMPGRI--ISA 412

Query: 99  LLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSA-----RSVKINLSR 153
           L     +  ++ +DEI ++S         AM    L+++  E   A       +  NLS 
Sbjct: 413 LKQAGSNNPLILLDEIDKMSSDFRGDPASAM----LEVLDSEQNFAFRDHYMELPFNLSN 468

Query: 154 FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED-----LKTIVQRGAKLTGLAVTDEAA 208
              +     +  +  PL DR  I I L+ Y  ED     +K ++ +  KL GL   +   
Sbjct: 469 ALFLTTANTLDTIPRPLLDRMEI-INLSSYTEEDKANIAMKYLLPKQMKLHGLTSRNIRI 527

Query: 209 CEIAMRS-----------RGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257
            E  +R            R   R  G + R+V       + K++T    +     L + +
Sbjct: 528 DEGTVRDIINYYTREAGVRNLEREIGSVCRKVAKIIVSENKKSVTVNRNNLEKF-LGVKR 586

Query: 258 MGFDQLDLRYLTMIARNFGGGPVGIETIS 286
             FD    R    IAR     PVG +T+S
Sbjct: 587 FRFDYAGERDEIGIARGLAWTPVGGDTLS 615


>gi|42566294|ref|NP_192327.3| AAA-type ATPase family protein [Arabidopsis thaliana]
 gi|332656970|gb|AEE82370.1| AAA-type ATPase family protein [Arabidopsis thaliana]
          Length = 609

 Score = 42.4 bits (98), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 86/207 (41%), Gaps = 44/207 (21%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTS-GPVIAKA--------GDLAALLTNLEDRD 107
           VLF GPPG GKT+ A+V+A + G+         V++K         G + +    L D  
Sbjct: 364 VLFEGPPGTGKTSCARVIANQAGIPLLYVPLEAVMSKYYGESERLLGAVFSQANELPDGA 423

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDF------QLDLMVGEGPSARSVKINLSRFTLIAATT 161
           ++F+DEI   +I  +  ++ A          Q+D    E            +  +IAAT 
Sbjct: 424 IIFLDEIDAFAISRDSEMHEATRRVLSVLLRQIDGFEQE-----------KKVVVIAATN 472

Query: 162 RVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK------LTGLAVTDEA-------- 207
           R   L   L  RF   I  +  +++  + I+ + AK      L  LA   EA        
Sbjct: 473 RKQDLDPALISRFDSMIMFDLPDLQTRQEIIAQYAKQLSKPELVQLAQATEAMSGRDIRD 532

Query: 208 ACEIAMRSRGTP----RIAGRLLRRVR 230
            C+ A R+  +      I G+L+RR +
Sbjct: 533 VCQGAERTWASKIINLYIVGQLIRRAK 559


>gi|116207062|ref|XP_001229340.1| hypothetical protein CHGG_02824 [Chaetomium globosum CBS 148.51]
 gi|88183421|gb|EAQ90889.1| hypothetical protein CHGG_02824 [Chaetomium globosum CBS 148.51]
          Length = 382

 Score = 42.4 bits (98), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 5/60 (8%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          +   RP+TL + T Q    + L+  ++A+      L H+LF GPPG GKT+    +A+EL
Sbjct: 37 VEKYRPKTLSDVTAQDHTITVLERTLQASN-----LPHMLFYGPPGTGKTSTILALAKEL 91


>gi|297848522|ref|XP_002892142.1| hypothetical protein ARALYDRAFT_470277 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297337984|gb|EFH68401.1| hypothetical protein ARALYDRAFT_470277 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 947

 Score = 42.4 bits (98), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E  +NF S  GP
Sbjct: 701 VLLYGPPGTGKTLLAKAVATECSLNFLSVKGP 732


>gi|284998984|ref|YP_003420752.1| AAA ATPase, central domain protein [Sulfolobus islandicus L.D.8.5]
 gi|284446880|gb|ADB88382.1| AAA ATPase, central domain protein [Sulfolobus islandicus L.D.8.5]
          Length = 585

 Score = 42.4 bits (98), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAA-------LLTNLEDRD-V 108
           +L  GPPG GKT++A+ +A +L  NF   SG  ++ AG L A           L++   +
Sbjct: 362 ILLYGPPGTGKTSIAKALANDLRFNFIELSGEEVSSAGPLDAPKIIAEKFYVALDNAPAI 421

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 422 IFIDEI 427



 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 8/71 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELG-VNFRSTSGPVIAKA-GDLAALLTNLEDR------DV 108
           V+  GPPG GKTT+A+ +A +LG V F      +++K  G+   LL N  D+       V
Sbjct: 95  VILFGPPGTGKTTIAKALANKLGWVYFELRPSKILSKWYGESELLLDNFFDQVEMNTPAV 154

Query: 109 LFIDEIHRLSI 119
           +FIDE+  L++
Sbjct: 155 VFIDELDSLTM 165


>gi|224118112|ref|XP_002331561.1| predicted protein [Populus trichocarpa]
 gi|222873785|gb|EEF10916.1| predicted protein [Populus trichocarpa]
          Length = 562

 Score = 42.4 bits (98), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 83/202 (41%), Gaps = 33/202 (16%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA---------GDLAALLTNLEDRD 107
           VLF GPPG GKT+ A+V+A + GV        V+            G +  L   + +  
Sbjct: 327 VLFEGPPGTGKTSCARVIATQAGVPLLYLPLEVVMSKYYGESERLLGKVFTLANEIPNGA 386

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           ++F+DE+   +   +  ++ A     L +++ +       K    +  +IAAT R   L 
Sbjct: 387 IIFLDEVDSFAAARDSEMHEATRRI-LSVLLRQIDGFEQDK----KVVVIAATNRKQDLD 441

Query: 168 NPLQDR------FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRI 221
             L  R      FG+P R N  EI       Q    LT          E+   +R T  +
Sbjct: 442 PALISRFDSMITFGLPDRQNRQEI-----AAQYAKHLT--------ESELEEFARVTEDM 488

Query: 222 AGRLLRRVRDFAEVAHAKTITR 243
           +GR +R V   AE + A  I R
Sbjct: 489 SGRDIRDVCQQAERSWASKIIR 510


>gi|209875637|ref|XP_002139261.1| ATPase, AAA family protein [Cryptosporidium muris RN66]
 gi|209554867|gb|EEA04912.1| ATPase, AAA family protein [Cryptosporidium muris RN66]
          Length = 680

 Score = 42.4 bits (98), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT LA+ +ARE   NF S  GP
Sbjct: 435 ILLYGPPGCGKTLLAKAIARESNANFISIRGP 466



 Score = 39.3 bits (90), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDV------ 108
           +L  GPPG GKT L+  +A E+G+ F   SGP  +   +G   A L  L D  V      
Sbjct: 113 ILLQGPPGTGKTHLSLCIAGEVGLPFFRVSGPSLISGMSGSSEATLRRLFDNAVENAPCF 172

Query: 109 LFIDEIHRLS 118
           + IDEI  +S
Sbjct: 173 VLIDEIDIIS 182


>gi|78778614|ref|YP_396726.1| cell division protein FtsH2 [Prochlorococcus marinus str. MIT 9312]
 gi|78712113|gb|ABB49290.1| membrane protease FtsH catalytic subunit [Prochlorococcus marinus
           str. MIT 9312]
          Length = 617

 Score = 42.4 bits (98), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 38/66 (57%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL VGPPG GKT LA+ VA E GV F S SG    +   G  A+ + +L D+       +
Sbjct: 198 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFDQAKKNAPCI 257

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 258 VFIDEI 263


>gi|73544331|ref|XP_848060.1| vesicular transport protein (CDC48 homolog) [Leishmania major
           strain Friedlin]
 gi|321438414|emb|CBZ12168.1| putative vesicular transport protein (CDC48 homologue) [Leishmania
           major strain Friedlin]
          Length = 666

 Score = 42.4 bits (98), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 20/39 (51%), Positives = 24/39 (61%), Gaps = 3/39 (7%)

Query: 53  ALDH---VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
            LDH   VL  GPPG GKT +A+ +A + G NF S  GP
Sbjct: 403 GLDHPVGVLLYGPPGCGKTLVAKAIANQSGANFISIKGP 441



 Score = 37.0 bits (84), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 32/66 (48%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL------EDRDV 108
           VL  GPPG+GKT L   +A  L V     + P I    +GD  A L NL          +
Sbjct: 130 VLLHGPPGVGKTKLVHAIAGSLQVPLFFVAAPEIVSGISGDSEAKLRNLFMDAIAAAPSI 189

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 190 VFIDEI 195


>gi|323126274|gb|ADX23571.1| cell division protein [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 661

 Score = 42.4 bits (98), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLE--DRDV 108
           VL  GPPG GKT LA+ VA E GV F S SG       V   A  + +L  + +  +R +
Sbjct: 223 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRSLFEDAKKAERAI 282

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 283 IFIDEI 288


>gi|317496811|ref|ZP_07955141.1| ATP-dependent Clp protease [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316895823|gb|EFV17975.1| ATP-dependent Clp protease [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 434

 Score = 42.4 bits (98), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 28/134 (20%)

Query: 13  SQEDADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKAR---------AEALDHVL 58
           ++ D +I+L +P+ ++EF      GQ EA   L V +     R              ++L
Sbjct: 57  AENDGEINLRKPKEIKEFLDQYVIGQDEAKKVLSVAVYNHYKRILMGGDSDVELQKSNIL 116

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRD---- 107
            +GP G GKT LAQ +A+ L V F       + +AG +   + N+        D D    
Sbjct: 117 MLGPTGSGKTLLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKIIQAADYDIDRA 176

Query: 108 ---VLFIDEIHRLS 118
              +++IDEI +++
Sbjct: 177 QCGIIYIDEIDKIT 190


>gi|297832876|ref|XP_002884320.1| hypothetical protein ARALYDRAFT_896213 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297330160|gb|EFH60579.1| hypothetical protein ARALYDRAFT_896213 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 616

 Score = 42.4 bits (98), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 43/89 (48%), Gaps = 8/89 (8%)

Query: 34  VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK- 92
           VE  S L+  I   K  A     VL VGPPG GKT LA+ VA E GV F S S     + 
Sbjct: 341 VEIVSCLQGSINYKKLGARLPRGVLLVGPPGTGKTLLARAVAGEAGVPFFSVSASEFVEL 400

Query: 93  -AGDLAALLTNL------EDRDVLFIDEI 114
             G  AA + +L          ++FIDE+
Sbjct: 401 FVGRGAARIRDLFNAARKNSPSIIFIDEL 429


>gi|170288230|ref|YP_001738468.1| appr-1-p processing domain-containing protein [Thermotoga sp. RQ2]
 gi|170175733|gb|ACB08785.1| Appr-1-p processing domain protein [Thermotoga sp. RQ2]
          Length = 599

 Score = 42.4 bits (98), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 60/140 (42%), Gaps = 9/140 (6%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG- 79
           LLRP+  E+F GQ     +  +     K        +L+ GPPG GKT++  ++ R    
Sbjct: 11  LLRPKDFEDFVGQDHIFGDKGILRRTLKT-GNMFSSILY-GPPGSGKTSVFSLLKRYFNG 68

Query: 80  --VNFRSTSGPV--IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME--DFQ 133
             V   ST   V  I         L     + +LF+DEIHRL+   + +L   +E  D  
Sbjct: 69  EVVYLSSTVHGVSEIKNVLKRGEQLRKYGKKLLLFLDEIHRLNKNQQMVLVSHVERGDIV 128

Query: 134 LDLMVGEGPSARSVKINLSR 153
           L     E PS   V   LSR
Sbjct: 129 LVATTTENPSFAIVPALLSR 148


>gi|90399322|emb|CAH68334.1| H0313F03.5 [Oryza sativa Indica Group]
 gi|90399388|emb|CAH68418.1| H0818E11.8 [Oryza sativa Indica Group]
 gi|125549753|gb|EAY95575.1| hypothetical protein OsI_17423 [Oryza sativa Indica Group]
          Length = 940

 Score = 42.4 bits (98), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E  +NF S  GP
Sbjct: 693 VLLYGPPGTGKTLLAKAVATECSLNFLSVKGP 724


>gi|119387548|ref|YP_918582.1| ATP-dependent metalloprotease FtsH [Paracoccus denitrificans
           PD1222]
 gi|119378123|gb|ABL72886.1| membrane protease FtsH catalytic subunit [Paracoccus denitrificans
           PD1222]
          Length = 610

 Score = 42.4 bits (98), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           VL VGPPG GKT LA+ VA E GV F S SG    +   G  AA + +L ++       +
Sbjct: 192 VLLVGPPGTGKTLLARAVAGEAGVTFLSISGSEFVELFVGVGAARVRDLFEQARKSAPAI 251

Query: 109 LFIDEIHRL 117
           +FIDE+  L
Sbjct: 252 IFIDELDAL 260


>gi|327274098|ref|XP_003221815.1| PREDICTED: spermatogenesis-associated protein 5-like [Anolis
           carolinensis]
          Length = 876

 Score = 42.4 bits (98), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALL------TNLEDRDV 108
           VL  GPPG GKT +A+ VA E+G +  + +GP +I+K  G+  A L       +L    +
Sbjct: 373 VLLYGPPGTGKTLIARAVANEVGAHVTTINGPEIISKFYGESEARLRQIFAEASLRRPSI 432

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 433 IFIDEIDAL 441



 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 16/32 (50%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG  KT +A+ +A E G+NF +  GP
Sbjct: 647 VLLYGPPGCSKTMIAKALANESGLNFLAVKGP 678


>gi|242077202|ref|XP_002448537.1| hypothetical protein SORBIDRAFT_06g028670 [Sorghum bicolor]
 gi|241939720|gb|EES12865.1| hypothetical protein SORBIDRAFT_06g028670 [Sorghum bicolor]
          Length = 928

 Score = 42.4 bits (98), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E  +NF S  GP
Sbjct: 681 VLLYGPPGTGKTLLAKAVATECSLNFLSVKGP 712


>gi|227891816|ref|ZP_04009621.1| ATPase of the AAA+ class [Lactobacillus salivarius ATCC 11741]
 gi|227866381|gb|EEJ73802.1| ATPase of the AAA+ class [Lactobacillus salivarius ATCC 11741]
          Length = 535

 Score = 42.4 bits (98), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 41/77 (53%), Gaps = 18/77 (23%)

Query: 56  HVLFVGPPGLGKTTLAQVVAR---ELGVNFRST---------SGPVIAKAGDLAALLTNL 103
           H++F GPPG GKTT+A++VAR    LG+   +T          G  +   GDL+  +   
Sbjct: 312 HMIFEGPPGTGKTTVARIVARLFYALGILENTTVIETKRNELEGKWV---GDLSGKINEK 368

Query: 104 EDR---DVLFIDEIHRL 117
            D     VLFIDE H+L
Sbjct: 369 VDSALGGVLFIDEAHQL 385


>gi|303274320|ref|XP_003056481.1| AAA ATPase [Micromonas pusilla CCMP1545]
 gi|226462565|gb|EEH59857.1| AAA ATPase [Micromonas pusilla CCMP1545]
          Length = 749

 Score = 42.4 bits (98), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 14/85 (16%)

Query: 47  AKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--------------AK 92
           A  RAE   H++ VGPPG GK+ LA++ A  +     S  GP++               +
Sbjct: 213 AGGRAEPASHMVLVGPPGSGKSMLARLTAYIVSECDVSRHGPLVRPSRADIIDVGRSPGR 272

Query: 93  AGDLAALLTNLEDRDVLFIDEIHRL 117
           + +L A+  +  +  VL ID+ HR+
Sbjct: 273 SAELIAIQCDKAEGGVLLIDDFHRM 297


>gi|187918641|ref|YP_001884207.1| cell division protein FtsH [Borrelia hermsii DAH]
 gi|119861489|gb|AAX17284.1| cell division protein FtsH [Borrelia hermsii DAH]
          Length = 635

 Score = 42.4 bits (98), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 35/69 (50%), Gaps = 7/69 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAK--ARAEAL-----DHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ EA   L   +E  K   + E +       VL VG PG GKT LA+ VA E 
Sbjct: 171 TFKDVAGQEEAKQELSEIVEFLKYPKKFEKIGARIPKGVLLVGSPGTGKTLLAKAVAGEA 230

Query: 79  GVNFRSTSG 87
           GVNF   SG
Sbjct: 231 GVNFFHMSG 239


>gi|119963777|ref|YP_948114.1| ATP-dependent protease ATP-binding subunit ClpX [Arthrobacter
           aurescens TC1]
 gi|119950636|gb|ABM09547.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Arthrobacter
           aurescens TC1]
          Length = 450

 Score = 42.4 bits (98), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---ED 105
           A  ++L +GP G GKT LAQ +AR L V F       + +AG    D+  +L  L    D
Sbjct: 140 AKSNILLIGPTGCGKTYLAQTLARRLNVPFAVADATALTEAGYVGEDVENILLKLIQAAD 199

Query: 106 RDV-------LFIDEIHRLS 118
            DV       ++IDEI ++S
Sbjct: 200 YDVKKAEQGIIYIDEIDKIS 219


>gi|94991511|ref|YP_599610.1| cell division protein ftsH [Streptococcus pyogenes MGAS2096]
 gi|94545019|gb|ABF35066.1| Cell division protein ftsH [Streptococcus pyogenes MGAS2096]
          Length = 540

 Score = 42.4 bits (98), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLE--DRDV 108
           VL  GPPG GKT LA+ VA E GV F S SG       V   A  + +L  + +  +R +
Sbjct: 104 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRSLFEDAKKAERAI 163

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 164 IFIDEI 169


>gi|322818611|gb|EFZ25968.1| mitochondrial ATP-dependent zinc metallopeptidase, putative
           [Trypanosoma cruzi]
          Length = 595

 Score = 42.4 bits (98), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 18/30 (60%), Positives = 22/30 (73%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           L VGPPG GKT LA+ +A+E GVNF   +G
Sbjct: 161 LLVGPPGCGKTMLAKAIAKEAGVNFFYATG 190


>gi|313664905|ref|YP_004046776.1| ATP-dependent metallopeptidase HflB [Mycoplasma leachii PG50]
 gi|312949694|gb|ADR24290.1| ATP-dependent metallopeptidase HflB [Mycoplasma leachii PG50]
          Length = 648

 Score = 42.4 bits (98), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 33/60 (55%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           EE +  VE    LK   + A A A A   VL  GPPG GKT LA+ VA E  V+F S +G
Sbjct: 177 EEKSELVELVDYLKQPAKYASAGARAPKGVLMEGPPGTGKTLLAKAVAGEANVSFFSIAG 236


>gi|309389975|gb|ADO77855.1| membrane protease FtsH catalytic subunit [Halanaerobium praevalens
           DSM 2228]
          Length = 633

 Score = 42.4 bits (98), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 40/83 (48%), Gaps = 1/83 (1%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQV-EACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           G     +++ D DI+       EE   ++ E    LK   +  +  AE    VL VGPPG
Sbjct: 139 GKSKAKLNESDVDITFADVANYEEVKEELQEVIQFLKKPDKFTELGAEVPKGVLMVGPPG 198

Query: 65  LGKTTLAQVVARELGVNFRSTSG 87
            GKT +A+ VA E GV F   SG
Sbjct: 199 TGKTLMAKAVAGEAGVPFYFISG 221


>gi|118097931|ref|XP_414833.2| PREDICTED: hypothetical protein [Gallus gallus]
          Length = 951

 Score = 42.4 bits (98), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 32/68 (47%), Gaps = 10/68 (14%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP----------VIAKAGDLAALLTNLEDR 106
            L  GPPGLGKTTLA V+AR  G N    +             I  A  + ++L   E  
Sbjct: 354 ALLCGPPGLGKTTLAHVIARHAGYNVVEMNASDDRSPETFRIRIEAATQMKSVLGAEEKP 413

Query: 107 DVLFIDEI 114
           + L IDEI
Sbjct: 414 NCLIIDEI 421


>gi|115460572|ref|NP_001053886.1| Os04g0617600 [Oryza sativa Japonica Group]
 gi|38345607|emb|CAD41890.2| OSJNBa0093O08.9 [Oryza sativa Japonica Group]
 gi|113565457|dbj|BAF15800.1| Os04g0617600 [Oryza sativa Japonica Group]
 gi|125591647|gb|EAZ31997.1| hypothetical protein OsJ_16174 [Oryza sativa Japonica Group]
          Length = 940

 Score = 42.4 bits (98), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E  +NF S  GP
Sbjct: 693 VLLYGPPGTGKTLLAKAVATECSLNFLSVKGP 724


>gi|51246388|ref|YP_066272.1| ATP-dependent protease La [Desulfotalea psychrophila LSv54]
 gi|81826768|sp|Q6AK61|LON2_DESPS RecName: Full=Lon protease 2; AltName: Full=ATP-dependent protease
           La 2
 gi|50877425|emb|CAG37265.1| probable ATP-dependent protease La [Desulfotalea psychrophila
           LSv54]
          Length = 774

 Score = 42.4 bits (98), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 72/166 (43%), Gaps = 40/166 (24%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAKAGDLAALLT 101
           + FVGPPG+GKT++ Q +A+ +G  F   S                 V A AG +   + 
Sbjct: 346 LCFVGPPGVGKTSICQSIAKSMGREFARLSLGGLRDEAEIRGHRRTYVGAMAGKVLRAMQ 405

Query: 102 NLEDRDVLF-IDEIHRLSI--------IVEEILYP----AMEDFQLDLMVGEGPSARSVK 148
            +   + +F +DEI ++S          + E+L P    +  D  LDL            
Sbjct: 406 KVGVANPVFCLDEIDKMSTDFRGDPAAALLEVLDPEQNSSFNDHYLDL-----------D 454

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
            +LS+   I     +  +  PLQDR  I I+L+ Y  ED + I ++
Sbjct: 455 YDLSQVFFITTANSLEGIPIPLQDRMEI-IQLSGYTEEDKQVIAEK 499


>gi|332299592|ref|YP_004441513.1| DNA polymerase III, subunits gamma and tau [Porphyromonas
           asaccharolytica DSM 20707]
 gi|332176655|gb|AEE12345.1| DNA polymerase III, subunits gamma and tau [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 616

 Score = 42.4 bits (98), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 13/104 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T +E  GQ   C  LK  I+  K     + H  LF GP G+GKT+ A+++AR +   
Sbjct: 26  RPQTFDEMLGQEAICLTLKSAIKQGK-----IAHAYLFCGPRGVGKTSAARILARTINCE 80

Query: 82  FRSTSGPVIAKAGDLAALLT----NLEDRDVL---FIDEIHRLS 118
             +  G       +  A L     N+ + D      +D+I RL+
Sbjct: 81  QLTPQGEACGVCPNCQAALHQRAFNIYELDAASNNSVDDIRRLN 124


>gi|327479804|gb|AEA83114.1| ATP-dependent protease La [Pseudomonas stutzeri DSM 4166]
          Length = 791

 Score = 42.4 bits (98), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 91/215 (42%), Gaps = 53/215 (24%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           VL VGPPG+GKT++ + +A  LG  F R + G +  +A              G L   L 
Sbjct: 373 VLLVGPPGVGKTSIGKSIAESLGRPFYRFSVGGMRDEAEIKGHRRTYIGALPGKLVQALK 432

Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAME----DFQLDLMVGEGPSARSVK 148
           ++E  + V+ +DEI +LS   +        E L P       D  LDL           +
Sbjct: 433 DVEVMNPVIMLDEIDKLSSSYQGDPASALLETLDPEQNVEFLDHYLDL-----------R 481

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR----------GAKL 198
           ++LS+   +     +  +  PL DR  + IRL+ Y  E+   I +R          G   
Sbjct: 482 LDLSKVLFVCTANTLDSIPGPLLDRMEV-IRLSGYIAEEKLAIAKRHLWPKLLDKTGVPK 540

Query: 199 TGLAVTD---EAACEIAMRSRGTPRIAGRLLRRVR 230
             LA++D   +A  E   R  G  ++  +L + VR
Sbjct: 541 ERLAISDSALKAVIEGYAREAGVRQLEKQLGKLVR 575


>gi|325963647|ref|YP_004241553.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323469734|gb|ADX73419.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 426

 Score = 42.4 bits (98), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------ED 105
           A  ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+        D
Sbjct: 119 AKSNILLIGPTGCGKTYLAQTLARRLNVPFAVADATALTEAGYVGEDVENILLKLIQAAD 178

Query: 106 RDV-------LFIDEIHRLS 118
            DV       ++IDEI ++S
Sbjct: 179 YDVKKAEQGIIYIDEIDKIS 198


>gi|284054460|ref|ZP_06384670.1| cell division protein [Arthrospira platensis str. Paraca]
          Length = 75

 Score = 42.4 bits (98), Expect = 0.092,   Method: Composition-based stats.
 Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F S SG       V   A  +  L    +D    +
Sbjct: 10  VLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKDNSPCL 69

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 70  IFIDEI 75


>gi|241889763|ref|ZP_04777061.1| ATP-dependent protease La [Gemella haemolysans ATCC 10379]
 gi|241863385|gb|EER67769.1| ATP-dependent protease La [Gemella haemolysans ATCC 10379]
          Length = 765

 Score = 42.4 bits (98), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 88/189 (46%), Gaps = 38/189 (20%)

Query: 43  FIEAAKARAEALDHVLFV-GPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA------- 93
           F+   K R +    +L + GPPG+GK++LA+ +A  +G +F R + G V  +A       
Sbjct: 330 FLAVKKLRDDMKSPILCLSGPPGVGKSSLAKSIAASMGRSFVRISLGGVHDEAEIRGHRR 389

Query: 94  -------GDLAALLTNLEDRD-VLFIDEIHRLSIIVE--------EILYPAMEDFQLDLM 137
                  G +   L  ++ ++ V+ +DEI +++  ++        E++ PA  +  +D  
Sbjct: 390 TYLGALPGKIIQSLKKIKTKNPVILLDEIDKMASDIKGDPAAAMLEVIDPAQNNEFVDHY 449

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED-----LKTIV 192
           +        +  +LS+   IA    + L+  PL+DR  + I L  Y I++      K ++
Sbjct: 450 L-------DIPFDLSKVLFIATANNLSLIPAPLRDRMEV-IELESYTIKEKENIAAKYLI 501

Query: 193 QRGAKLTGL 201
            R  K  GL
Sbjct: 502 PRQTKENGL 510


>gi|170780555|ref|YP_001708887.1| cell division protein ftsH-like protein [Clavibacter michiganensis
           subsp. sepedonicus]
 gi|169155123|emb|CAQ00223.1| cell division protein ftsH homolog [Clavibacter michiganensis
           subsp. sepedonicus]
          Length = 666

 Score = 42.4 bits (98), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 104/247 (42%), Gaps = 52/247 (21%)

Query: 34  VEACSNLKVFI-EAAKARAEAL---DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPV 89
           +E    +K F+ E AK +A        VL  GPPG GKT LA+ VA E GV F S SG  
Sbjct: 173 IEELEEIKDFLKEPAKFQAVGARIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSD 232

Query: 90  IAK--AGDLAALLTNLEDR------DVLFIDEI-----HRLSIIVEEILYPAMEDFQLDL 136
             +   G  A+ + +L ++       ++F+DEI     HR +                  
Sbjct: 233 FVEMFVGVGASRVRDLFEQAKQNAPAIIFVDEIDAVGRHRGA------------------ 274

Query: 137 MVGEGPSARSVKINL-----------SRFTLIAATTRVGLLTNPL--QDRFGIPIRLNFY 183
            VG G   R   +N            +   LIAAT R  +L   L    RF   I ++  
Sbjct: 275 GVGGGNDEREQTLNQLLVEMDGFDVKTNVILIAATNRPDVLDPALLRPGRFDRQIGVDAP 334

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           +++  K I++   +   LA    A  ++ + +R TP   G  L  V + A +  A++  +
Sbjct: 335 DLQGRKQILEVHGRGKPLA----AGVDLEVLARKTPGFTGADLANVLNEAALLTARSNAQ 390

Query: 244 EIADAAL 250
            I D AL
Sbjct: 391 LIDDRAL 397


>gi|146281624|ref|YP_001171777.1| ATP-dependent protease La [Pseudomonas stutzeri A1501]
 gi|145569829|gb|ABP78935.1| ATP-dependent protease La [Pseudomonas stutzeri A1501]
          Length = 791

 Score = 42.4 bits (98), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 91/215 (42%), Gaps = 53/215 (24%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           VL VGPPG+GKT++ + +A  LG  F R + G +  +A              G L   L 
Sbjct: 373 VLLVGPPGVGKTSIGKSIAESLGRPFYRFSVGGMRDEAEIKGHRRTYIGALPGKLVQALK 432

Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAME----DFQLDLMVGEGPSARSVK 148
           ++E  + V+ +DEI +LS   +        E L P       D  LDL           +
Sbjct: 433 DVEVMNPVIMLDEIDKLSSSYQGDPASALLETLDPEQNVEFLDHYLDL-----------R 481

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR----------GAKL 198
           ++LS+   +     +  +  PL DR  + IRL+ Y  E+   I +R          G   
Sbjct: 482 LDLSKVLFVCTANTLDSIPGPLLDRMEV-IRLSGYIAEEKLAIAKRHLWPKLLDKTGVPK 540

Query: 199 TGLAVTD---EAACEIAMRSRGTPRIAGRLLRRVR 230
             LA++D   +A  E   R  G  ++  +L + VR
Sbjct: 541 ERLAISDSALKAVIEGYAREAGVRQLEKQLGKLVR 575


>gi|15232908|ref|NP_186894.1| cell division protein ftsH, putative [Arabidopsis thaliana]
 gi|6957708|gb|AAF32452.1| cell division protein FtsH-like protein [Arabidopsis thaliana]
 gi|17065470|gb|AAL32889.1| cell division protein FtsH-like protein [Arabidopsis thaliana]
 gi|30725442|gb|AAP37743.1| At3g02450 [Arabidopsis thaliana]
 gi|332640288|gb|AEE73809.1| putative cell division protein ftsH [Arabidopsis thaliana]
          Length = 622

 Score = 42.4 bits (98), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 43/89 (48%), Gaps = 8/89 (8%)

Query: 34  VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK- 92
           VE  S L+  I   K  A     VL VGPPG GKT LA+ VA E GV F S S     + 
Sbjct: 347 VEIVSCLQGSINYKKLGARLPRGVLLVGPPGTGKTLLARAVAGEAGVPFFSVSASEFVEL 406

Query: 93  -AGDLAALLTNL------EDRDVLFIDEI 114
             G  AA + +L          ++FIDE+
Sbjct: 407 FVGRGAARIRDLFNAARKNSPSIIFIDEL 435


>gi|326499736|dbj|BAJ86179.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 707

 Score = 42.4 bits (98), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ +A E GV F S SG       V   A  +  L +  + R   +
Sbjct: 256 VLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCI 315

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 316 IFIDEI 321


>gi|323142056|ref|ZP_08076904.1| cell division protease FtsH [Phascolarctobacterium sp. YIT 12067]
 gi|322413443|gb|EFY04314.1| cell division protease FtsH [Phascolarctobacterium sp. YIT 12067]
          Length = 651

 Score = 42.4 bits (98), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 50/104 (48%), Gaps = 15/104 (14%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  EA   L+  +E  K   +  D        VL  GPPG GKT LA+ VA E 
Sbjct: 151 TFKDVAGAEEAKQELEEVVEFLKHPQKYNDLGAKIPKGVLLYGPPGTGKTLLAKAVAGEA 210

Query: 79  GVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEI 114
           GV F S SG    +   G  A+ + +L D+       ++FIDEI
Sbjct: 211 GVPFFSISGSDFVEMFVGVGASRVRDLFDQAKKSAPCIVFIDEI 254


>gi|304312881|ref|YP_003812479.1| MoxR-like ATPase [gamma proteobacterium HdN1]
 gi|301798614|emb|CBL46844.1| MoxR-like ATPase [gamma proteobacterium HdN1]
          Length = 370

 Score = 42.4 bits (98), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 93/209 (44%), Gaps = 30/209 (14%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKAGDLAALLTNLEDR-------- 106
           HVL  G PGLGKT L + +AR     F R    P +  +      L +++          
Sbjct: 91  HVLIEGVPGLGKTLLVKALARCFDGQFGRIQFTPDLMPSDVTGHALYDMKTERFTIRRGP 150

Query: 107 ---DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
              ++L  DEI+R     +  L   M++ Q+ +  G+G +A      L+ F ++A    +
Sbjct: 151 AFTNLLLADEINRAPAKTQAALLEIMQEKQITIE-GKGFAA------LTPFMVLATQNPI 203

Query: 164 GLL-TNPLQ----DRFGIPIRLNFYEIED---LKTIVQRGAKLTGLAVTDEAACEIAMRS 215
               T PL     DRF + IR+++ ++++   L T V  G +L GL V    A E  + S
Sbjct: 204 EQEGTYPLPEAELDRFMLKIRIDYPDLQEEIKLVTQVTTGQRLDGLNVD---AIEPVITS 260

Query: 216 RGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
               RI   +   V D A V +A  + R+
Sbjct: 261 EQVQRIQALVSNIVADPAVVEYAVRLVRQ 289


>gi|302842074|ref|XP_002952581.1| hypothetical protein VOLCADRAFT_105558 [Volvox carteri f.
           nagariensis]
 gi|300262220|gb|EFJ46428.1| hypothetical protein VOLCADRAFT_105558 [Volvox carteri f.
           nagariensis]
          Length = 1909

 Score = 42.4 bits (98), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 59/134 (44%), Gaps = 19/134 (14%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTL 70
           +++ +P +  +  G  E  ++++  IE      E            VL  GPPG GKT L
Sbjct: 381 VTVAKPLSYADLGGIEEVLADIRELIEYPIKHPEVYAWLGVEPPRGVLLHGPPGCGKTAL 440

Query: 71  AQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL--EDRD----VLFIDEIHRLSIIVE 122
           A  +A E GV F   S P I    +G+  A L  L  E RD    ++FI    +  I   
Sbjct: 441 ANAIANECGVPFLKVSAPEIVSGMSGESEAKLRQLFGEARDLAPCIVFIASAGKDEI--- 497

Query: 123 EILYPAMEDFQLDL 136
           + ++P  E  Q ++
Sbjct: 498 DAIFPKRETAQREM 511



 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT +A+ VA E G NF S  GP
Sbjct: 789 VLLYGPPGCGKTLVAKAVANESGANFISIKGP 820


>gi|293630868|gb|ACB29725.3| FtsH4 protein [Triticum monococcum subsp. aegilopoides]
 gi|293630870|gb|ACU00615.2| FtsH4 protein [Triticum monococcum subsp. monococcum]
          Length = 706

 Score = 42.4 bits (98), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ +A E GV F S SG       V   A  +  L +  + R   +
Sbjct: 256 VLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCI 315

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 316 IFIDEI 321


>gi|293363689|ref|ZP_06610436.1| recombination factor protein RarA [Mycoplasma alligatoris A21JP2]
 gi|292552733|gb|EFF41496.1| recombination factor protein RarA [Mycoplasma alligatoris A21JP2]
          Length = 409

 Score = 42.4 bits (98), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 51/110 (46%), Gaps = 11/110 (10%)

Query: 22  LRPRTLEEFTGQVEACSNL-KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           LRP+ L +  GQ      L K+ +   K         +F G  G+GKT+ A  +A ++ +
Sbjct: 8   LRPKKLSDIVGQKHVVELLQKIALNKVKMS------FIFFGESGIGKTSAAFALANQMKL 61

Query: 81  NFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
              S     I    DL   L N E   ++ IDEIHRL+   ++IL   +E
Sbjct: 62  K-TSFFNASIDNKSDLVEKLANSE---IIIIDEIHRLNKDKQDILLSYLE 107


>gi|268325728|emb|CBH39316.1| cell division control protein 48 [uncultured archaeon]
          Length = 739

 Score = 42.4 bits (98), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 20/34 (58%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL  GPPG GKT +A+ VA E   NF S SGP I
Sbjct: 225 VLLRGPPGTGKTLIAKAVANETDANFYSISGPEI 258



 Score = 38.5 bits (88), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 17/32 (53%), Positives = 19/32 (59%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT L + VA E   NF S  GP
Sbjct: 497 ILLFGPPGTGKTMLVKAVANESDANFISIKGP 528


>gi|189205687|ref|XP_001939178.1| ribosome biogenesis ATPase RIX7 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187975271|gb|EDU41897.1| ribosome biogenesis ATPase RIX7 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 740

 Score = 42.4 bits (98), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 27/52 (51%)

Query: 37  CSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           C  +K   + AK    A   VL  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 495 CEPIKDPAKFAKFGISAPTGVLLWGPPGCGKTLLAKAVAAESKANFISVKGP 546



 Score = 36.2 bits (82), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 20/34 (58%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT + +  A ELGV F    GP +
Sbjct: 203 ILLHGPPGCGKTVICRAFAAELGVPFIEILGPSV 236


>gi|159041490|ref|YP_001540742.1| replication factor C [Caldivirga maquilingensis IC-167]
 gi|157920325|gb|ABW01752.1| Replication factor C [Caldivirga maquilingensis IC-167]
          Length = 348

 Score = 42.4 bits (98), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 77/178 (43%), Gaps = 24/178 (13%)

Query: 54  LDHVLFVGPPGLGKTTLAQVVAREL-GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID 112
           L H+LF GPPG+GKTT A  +AREL G ++RS+              +  L   D   ID
Sbjct: 40  LPHLLFYGPPGVGKTTAALALARELYGDSWRSS--------------VLELNASDERGID 85

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSR-FTLIAATTRVGLLTN--- 168
            I          +      F+L ++          +  L R   + A+TTR  LL N   
Sbjct: 86  VIREKVKEFARTIPTGPVPFKLVILDEADNMTSDAQQALRRIMEMYASTTRFILLANYIS 145

Query: 169 ----PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
               P+Q R  I  R N    E +   +++ AK TG+ VT++    I   S+G  R A
Sbjct: 146 GIIEPIQSRCAI-FRFNPLPKEAVIERLRQIAKETGVEVTEDGLEAIWEVSQGDMRKA 202


>gi|93007059|ref|YP_581496.1| ATP-dependent protease ATP-binding subunit [Psychrobacter
           cryohalolentis K5]
 gi|122414802|sp|Q1Q8J1|CLPX_PSYCK RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|92394737|gb|ABE76012.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Psychrobacter
           cryohalolentis K5]
          Length = 424

 Score = 42.4 bits (98), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 49/101 (48%), Gaps = 15/101 (14%)

Query: 33  QVEACSNLKVFIEAAKARAE-ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA 91
           Q+ A  + K  I A  A  E A  ++L +GP G GKT LAQ +AR L V F       + 
Sbjct: 103 QILANDSKKAKIGADDAMVELAKSNILLIGPTGSGKTLLAQTLARLLDVPFAMADATTLT 162

Query: 92  KAGDLAALLTNL-------EDRDV-------LFIDEIHRLS 118
           +AG +   + N+        D DV       ++IDEI ++S
Sbjct: 163 EAGYVGEDVENIVQKLLQASDYDVSKAEQGIIYIDEIDKIS 203


>gi|329765595|ref|ZP_08257171.1| AAA family ATPase, CDC48 subfamily protein [Candidatus
           Nitrosoarchaeum limnia SFB1]
 gi|329138033|gb|EGG42293.1| AAA family ATPase, CDC48 subfamily protein [Candidatus
           Nitrosoarchaeum limnia SFB1]
          Length = 713

 Score = 42.4 bits (98), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 8/75 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL--EDRD----V 108
           +L  GPPG GKT +A+V+A E   N  S +GP I     G+  A L ++  E +D    +
Sbjct: 208 ILLYGPPGCGKTLIAKVLASESEANMFSINGPEIMNKYYGETEAKLRDIFKEAKDNSPSI 267

Query: 109 LFIDEIHRLSIIVEE 123
           +FIDEI  ++   EE
Sbjct: 268 IFIDEIDAIAPKREE 282


>gi|307721184|ref|YP_003892324.1| ATPase AAA [Sulfurimonas autotrophica DSM 16294]
 gi|306979277|gb|ADN09312.1| AAA ATPase central domain protein [Sulfurimonas autotrophica DSM
           16294]
          Length = 551

 Score = 42.4 bits (98), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG+GKT +A+ VA E GV F   SG
Sbjct: 189 VLLVGPPGVGKTMIAKAVAHEAGVPFYYQSG 219


>gi|302388876|ref|YP_003824697.1| PTS system transcriptional activator [Thermosediminibacter oceani
           DSM 16646]
 gi|302199504|gb|ADL07074.1| PTS system transcriptional activator [Thermosediminibacter oceani
           DSM 16646]
          Length = 878

 Score = 42.4 bits (98), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 73/158 (46%), Gaps = 40/158 (25%)

Query: 36  ACSNLKVFIEAAKAR----AEALDHVLFVGPPGLGKTTLAQVVAR---ELGVNFRSTSGP 88
           A  +LK  IE AKA        L H L VGP G+GKTT A+ + R   E+G    +T+  
Sbjct: 147 ADESLKAQIEQAKAAILYPPHGL-HTLIVGPTGVGKTTFAEAMYRYAVEMG-KIPATAPF 204

Query: 89  VIAKAGDLAA----LLTNL----------EDRD-----------VLFIDEIHRLSIIVEE 123
           V+    D A     LL+ L           DR+           +LF+DE+HRL    +E
Sbjct: 205 VVFNCADYAENPQLLLSQLFGYVRGAFTGADREKKGLVEQADGGILFLDEVHRLPPEGQE 264

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATT 161
           +++  M D  +   +GE  + R      +R  +IAATT
Sbjct: 265 MMFLLM-DKGIYRRLGESENTRQ-----ARVLIIAATT 296


>gi|295092869|emb|CBK78976.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Clostridium
           cf. saccharolyticum K10]
          Length = 434

 Score = 42.4 bits (98), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 28/128 (21%)

Query: 19  ISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKAR-----AEALD----HVLFVGPPG 64
           I+LL+P+ ++EF      GQ EA   L V +     R     ++ +D    ++L +GP G
Sbjct: 63  INLLKPKEIKEFLDEYVVGQEEAKKVLSVAVYNHYKRITSQGSQDVDLQKSNILMLGPTG 122

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRD-------VLF 110
            GKT LA  +A+ L V F       + +AG +   + N+        D D       +++
Sbjct: 123 SGKTYLANTLAKILNVPFAVADATTLTEAGYVGEDVENILLKIIQAADYDISKAEYGIIY 182

Query: 111 IDEIHRLS 118
           IDEI +++
Sbjct: 183 IDEIDKIT 190


>gi|237786214|ref|YP_002906919.1| cell division protein FtsH [Corynebacterium kroppenstedtii DSM
           44385]
 gi|237759126|gb|ACR18376.1| cell division protein FtsH [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 910

 Score = 42.4 bits (98), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL  GPPG GKT LA+ VA E GV F S SG       V   A  +  L T  ++    +
Sbjct: 209 VLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFTQAKENSPCI 268

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 269 IFIDEI 274


>gi|115920972|ref|XP_785189.2| PREDICTED: similar to peroxisomal biogenesis factor 6-like protein
           [Strongylocentrotus purpuratus]
 gi|115978372|ref|XP_001187832.1| PREDICTED: similar to peroxisomal biogenesis factor 6-like protein
           [Strongylocentrotus purpuratus]
          Length = 956

 Score = 42.4 bits (98), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E  +NF S  GP
Sbjct: 715 VLLYGPPGTGKTLLAKAVATECSLNFLSVKGP 746


>gi|78777661|ref|YP_393976.1| ATP-dependent protease ATP-binding subunit [Sulfurimonas
           denitrificans DSM 1251]
 gi|78498201|gb|ABB44741.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Sulfurimonas
           denitrificans DSM 1251]
          Length = 414

 Score = 42.4 bits (98), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 14/84 (16%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL----- 103
           A  +VL +GP G GKT +AQ +AR L V         + +AG    D+  +LT L     
Sbjct: 110 AKSNVLLIGPTGSGKTLMAQTIARVLNVPIAIADATSLTEAGYVGEDVENILTKLLQAAD 169

Query: 104 -----EDRDVLFIDEIHRLSIIVE 122
                  R ++FIDEI ++S + E
Sbjct: 170 GDVERAQRGIVFIDEIDKISRMSE 193


>gi|73668447|ref|YP_304462.1| cell division control protein 48 [Methanosarcina barkeri str.
           Fusaro]
 gi|72395609|gb|AAZ69882.1| cell division control protein 48 [Methanosarcina barkeri str.
           Fusaro]
          Length = 754

 Score = 42.4 bits (98), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL------EDRDV 108
           VL  GPPG GKT +A+ VA E   NF + SGP I     G+    L  +      E   +
Sbjct: 213 VLLHGPPGTGKTLIAKAVASETDANFITISGPEIVSKYYGESEQKLREIFEEAEKEAPSI 272

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 273 IFIDEIDSIA 282



 Score = 40.0 bits (92), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 485 VLLFGPPGTGKTLLAKAVASESEANFISIKGP 516


>gi|327398442|ref|YP_004339311.1| AAA ATPase central domain-containing protein [Hippea maritima DSM
           10411]
 gi|327181071|gb|AEA33252.1| AAA ATPase central domain protein [Hippea maritima DSM 10411]
          Length = 370

 Score = 42.4 bits (98), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 50/92 (54%), Gaps = 19/92 (20%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF---RSTSGP------VIAKAGDLAALLTNLEDRD 107
           VLF GPPG+GKTT A+++A++  ++F    +T  P       + K    A +L       
Sbjct: 39  VLF-GPPGVGKTTYAKLLAKKHRLDFFYLNATDCPTKTLKDTLKKGSKEAPIL------- 90

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
            + IDEIHR     +++L P +ED  + +MVG
Sbjct: 91  -VVIDEIHRFDKKQQDVLLPFLEDGSV-VMVG 120


>gi|327311518|ref|YP_004338415.1| replication factor C large subunit [Thermoproteus uzoniensis
          768-20]
 gi|326947997|gb|AEA13103.1| replication factor C large subunit [Thermoproteus uzoniensis
          768-20]
          Length = 422

 Score = 42.4 bits (98), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 15/72 (20%)

Query: 23 RPRTLEEFTGQVEA--------CSNLKVFIEAAKARAEALDH-------VLFVGPPGLGK 67
          RPRT +E   Q EA        C+  +   +  KA A+  D        VL  GPPG+GK
Sbjct: 9  RPRTFKEVVDQEEAKYALASWVCARFRAPEQFCKAWAKNKDKKISEAKAVLLAGPPGIGK 68

Query: 68 TTLAQVVARELG 79
          TTL   +A E+ 
Sbjct: 69 TTLVHALANEIN 80


>gi|320352983|ref|YP_004194322.1| ATP-dependent proteinase [Desulfobulbus propionicus DSM 2032]
 gi|320121485|gb|ADW17031.1| ATP-dependent proteinase [Desulfobulbus propionicus DSM 2032]
          Length = 809

 Score = 42.4 bits (98), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 55/231 (23%), Positives = 92/231 (39%), Gaps = 53/231 (22%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF------------------RSTSGPVIAKAGDLAA 98
           + FVGPPG+GKT+L Q +A+ +G  F                  R+  G +  +   L  
Sbjct: 370 ICFVGPPGVGKTSLGQAIAKAMGRKFYRLSLGGMRDEAEIRGHRRTYIGALPGRI--LQG 427

Query: 99  LLTNLEDRDVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN 150
           L +   +  V  +DEI ++        S  + E+L P   +   D  +       ++  +
Sbjct: 428 LKSVGTNNPVFMMDEIDKIGDDYRGDPSSALLEVLDPEQNNTFSDHYM-------NLPFD 480

Query: 151 LSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL-----KTIVQRGAKLTGLAVT- 204
           LS+   I    R   +  PL DR  + I+L+ Y +E+      K ++ R  K  G+  T 
Sbjct: 481 LSKVMFITTANRSDTIPGPLLDRMEV-IQLSGYTLEEKMVIANKYLLPRQIKENGIKPTQ 539

Query: 205 ---DEAACEIAMRS-------RGTPRIAGRLLRRV-RDFAEVAHAKTITRE 244
              D    EI +         R   R  G++ R++ R  AE      +  E
Sbjct: 540 IKIDNPTLEIIISRYTHEAGVRNLERALGKVCRKIARKVAEGGKGPYVISE 590


>gi|291000128|ref|XP_002682631.1| peroxisomal biogenesis aaa ATPase Pex1 [Naegleria gruberi]
 gi|284096259|gb|EFC49887.1| peroxisomal biogenesis aaa ATPase Pex1 [Naegleria gruberi]
          Length = 818

 Score = 42.4 bits (98), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 17/32 (53%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT +A  +A+E G+NF S  GP
Sbjct: 501 LLLYGPPGSGKTFIASAIAKECGLNFISIKGP 532


>gi|255066288|ref|ZP_05318143.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           sicca ATCC 29256]
 gi|255049498|gb|EET44962.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           sicca ATCC 29256]
          Length = 422

 Score = 42.4 bits (98), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +AR+L V F       + +AG    D+  ++T L        
Sbjct: 113 NILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDV 172

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 173 EKAQRGIVYIDEIDKIS 189


>gi|224475654|ref|YP_002633260.1| ATP-dependent metalloprotease FtsH [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222420261|emb|CAL27075.1| ATP-dependent metalloprotease FtsH [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 700

 Score = 42.4 bits (98), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 260

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 261 IFIDEI 266


>gi|222099137|ref|YP_002533705.1| recombination factor protein RarA/unknown domain fusion protein
           [Thermotoga neapolitana DSM 4359]
 gi|221571527|gb|ACM22339.1| recombination factor protein RarA/unknown domain fusion protein
           [Thermotoga neapolitana DSM 4359]
          Length = 599

 Score = 42.4 bits (98), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 91/232 (39%), Gaps = 35/232 (15%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           LLRP   ++F+GQ        +     K        +L+ GPPG GKT++  ++ R    
Sbjct: 11  LLRPEDFDDFSGQDHLFGEDGILRRTLKT-GNMFSAILY-GPPGSGKTSVFSLLKRYFNG 68

Query: 81  NFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME--DF 132
                S  V     ++ ++L   E       + +LF+DEIHRL+   + +L   +E  D 
Sbjct: 69  EVVYLSSTVHG-VSEIKSVLKRGEQMKRYGKKLLLFLDEIHRLNKNQQAVLVTHVERGDI 127

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            L     E PS   +   LSR  +        L   PL +              DL  IV
Sbjct: 128 ILVATTTENPSFAVIPALLSRCKI--------LYFKPLSEN-------------DLLEIV 166

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           ++  K   + + D+    +   + G  R   RLL  +    +V   K +T E
Sbjct: 167 EKAVKKLNMKLDDDVKKALVRNAEGDAR---RLLNTLEIVYQVFKDKEVTIE 215


>gi|170027981|ref|XP_001841875.1| replication factor C subunit 2 [Culex quinquefasciatus]
 gi|167868345|gb|EDS31728.1| replication factor C subunit 2 [Culex quinquefasciatus]
          Length = 344

 Score = 42.4 bits (98), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 33/66 (50%), Gaps = 6/66 (9%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR-E 77
          I   RP+  EE  G  +  S L VF     A      +++  GPPG+GKTT    +AR  
Sbjct: 31 IEKYRPQKFEEIVGNEDTVSRLGVFATQGNA-----PNIIIAGPPGVGKTTTILCLARIL 85

Query: 78 LGVNFR 83
          LG NFR
Sbjct: 86 LGENFR 91


>gi|169824140|ref|YP_001691751.1| cell division protein [Finegoldia magna ATCC 29328]
 gi|302380855|ref|ZP_07269318.1| putative Cell division protease FtsH [Finegoldia magna
           ACS-171-V-Col3]
 gi|167830945|dbj|BAG07861.1| cell division protein [Finegoldia magna ATCC 29328]
 gi|302311350|gb|EFK93368.1| putative Cell division protease FtsH [Finegoldia magna
           ACS-171-V-Col3]
          Length = 628

 Score = 42.4 bits (98), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LAQ VA E  V F S SG    +      A  +  L     D+   +
Sbjct: 199 VLLVGPPGTGKTLLAQAVAGEAKVPFFSMSGSEFVEMFVGLGASKVRDLFKQAADKAPCI 258

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 259 VFIDEI 264


>gi|126460718|ref|YP_001056996.1| AAA family ATPase, CDC48 subfamily protein [Pyrobaculum
           calidifontis JCM 11548]
 gi|126250439|gb|ABO09530.1| AAA family ATPase, CDC48 subfamily [Pyrobaculum calidifontis JCM
           11548]
          Length = 731

 Score = 42.4 bits (98), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLAALLTNLEDR------DV 108
           +L  GPPG GKT LA+ VA E G NF +  GP I     G+   ++  +  +       V
Sbjct: 491 ILLFGPPGTGKTLLAKAVATESGANFVAVRGPEIFSKWVGESEKMVREIFRKARMAAPAV 550

Query: 109 LFIDEIHRLS 118
           +FIDEI  L+
Sbjct: 551 IFIDEIDALA 560



 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 16/115 (13%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
           T E+     +A   ++  +E      E   H        +L +GPPG GKT LA+ VA E
Sbjct: 177 TWEDIGDLEDAKQKIRELVELPLRHPELFKHLGIEPPKGILLIGPPGTGKTLLAKAVANE 236

Query: 78  LGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DVLFIDEIHRLSIIVEEI 124
               F + +GP I     G+  A L  + +        ++FIDEI  ++   EE+
Sbjct: 237 ANAYFVAINGPEIMSKYYGESEARLREIFEEAKKNAPAIIFIDEIDAIAPKREEV 291


>gi|116670949|ref|YP_831882.1| ATP-dependent protease ATP-binding subunit ClpX [Arthrobacter sp.
           FB24]
 gi|166214753|sp|A0JXL2|CLPX_ARTS2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|116611058|gb|ABK03782.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Arthrobacter
           sp. FB24]
          Length = 429

 Score = 42.4 bits (98), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------ED 105
           A  ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+        D
Sbjct: 119 AKSNILLIGPTGCGKTYLAQTLARRLNVPFAVADATALTEAGYVGEDVENILLKLIQAAD 178

Query: 106 RDV-------LFIDEIHRLS 118
            DV       ++IDEI ++S
Sbjct: 179 YDVKKAEQGIIYIDEIDKIS 198


>gi|319428675|gb|ADV56698.1| AAA-family ATPase [Phaseolus vulgaris]
          Length = 949

 Score = 42.4 bits (98), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E  +NF S  GP
Sbjct: 703 VLLYGPPGTGKTLLAKAVATECSLNFLSVKGP 734


>gi|298493199|ref|YP_003723376.1| ATP-dependent metalloprotease FtsH ['Nostoc azollae' 0708]
 gi|298235117|gb|ADI66253.1| ATP-dependent metalloprotease FtsH ['Nostoc azollae' 0708]
          Length = 631

 Score = 42.4 bits (98), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ +A E GV F S SG       V   A  +  L    +D    +
Sbjct: 211 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKDNAPCI 270

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 271 IFIDEI 276


>gi|237745592|ref|ZP_04576072.1| ATP-dependent protease ATP-binding subunit [Oxalobacter formigenes
           HOxBLS]
 gi|229376943|gb|EEO27034.1| ATP-dependent protease ATP-binding subunit [Oxalobacter formigenes
           HOxBLS]
          Length = 423

 Score = 42.4 bits (98), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE 104
           A  ++L VGP G GKT LAQ +AR L V F       + +AG +          LL N +
Sbjct: 113 AKSNILLVGPTGSGKTLLAQTLARMLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCD 172

Query: 105 ------DRDVLFIDEIHRLS 118
                  R +++IDEI ++S
Sbjct: 173 YDVEKAQRGIVYIDEIDKIS 192


>gi|218883356|ref|YP_002427738.1| Cell division control protein 48, AAA family [Desulfurococcus
           kamchatkensis 1221n]
 gi|218764972|gb|ACL10371.1| Cell division control protein 48, AAA family [Desulfurococcus
           kamchatkensis 1221n]
          Length = 746

 Score = 42.4 bits (98), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 51/120 (42%), Gaps = 26/120 (21%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
           T E+     E    ++  +E      E  +H        +L  GPPG GKT LA+ +A E
Sbjct: 186 TWEDIGDLDEVKQKIREIVELPLKYPELFEHLGIEPPKGILLYGPPGTGKTLLAKALANE 245

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDR-------------DVLFIDEIHRLSIIVEEI 124
           +G  F + +GP I     ++      E+R              V+FIDEI  ++   EE+
Sbjct: 246 IGAYFVTINGPEI-----MSKFYGESEERLRKIFEEAQANAPAVIFIDEIDSIAPKREEV 300



 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 8/72 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDR------DV 108
           +L  GPPG GKT LA+ VA E G NF +  GP V++K  G+    +  +  R       V
Sbjct: 501 ILLFGPPGTGKTLLAKAVATESGANFITVRGPEVLSKWVGESEKAIRQIFRRARMVAPAV 560

Query: 109 LFIDEIHRLSII 120
           +F DEI  ++ I
Sbjct: 561 VFFDEIDSIAGI 572


>gi|108761752|ref|YP_630244.1| ATP-dependent protease ATP-binding subunit ClpX [Myxococcus xanthus
           DK 1622]
 gi|8134368|sp|Q9X5N1|CLPX_MYXXA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|4838464|gb|AAD31003.1|AF127082_2 ATP-dependent protease ATPase subunit ClpX [Myxococcus xanthus]
 gi|108465632|gb|ABF90817.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Myxococcus
           xanthus DK 1622]
          Length = 427

 Score = 42.4 bits (98), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 59/136 (43%), Gaps = 31/136 (22%)

Query: 14  QEDADISLLRPR------TLEEFT-GQVEACSNLKVFIEAAKARAEAL----------DH 56
           +E  D  L  PR       L+E+  GQ  A   L V +     R E+            +
Sbjct: 56  EETKDTKLRIPRPSEIKAVLDEYVIGQERAKKTLSVAVHNHYKRIESKVAMEDVELQKSN 115

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL--------- 103
           +L +GP G GKT LAQ +AR L V F       + +AG    D+  ++ NL         
Sbjct: 116 ILLLGPTGSGKTLLAQTLARILNVPFTIADATCLTEAGYVGEDVENIIVNLLQAADHDIE 175

Query: 104 -EDRDVLFIDEIHRLS 118
              R +++IDEI +++
Sbjct: 176 RAQRGIVYIDEIDKIA 191


>gi|322700463|gb|EFY92218.1| DNA replication ATPase [Metarhizium acridum CQMa 102]
          Length = 1289

 Score = 42.4 bits (98), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 72/152 (47%), Gaps = 18/152 (11%)

Query: 22   LRPRTLEEFTGQVEACSN--LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
            +RP TL++  GQ     N  L+  IE  +     +  ++  G  G GKTT+A+ +A  +G
Sbjct: 881  MRPTTLDDVCGQDLVGPNGVLRGLIETNR-----VPSMILWGASGTGKTTIARCIAHMVG 935

Query: 80   VNF----RSTSGPVIAKA--GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
              F     +++G    K    + A+ L+    R ++F DEIHR +   +++    +E   
Sbjct: 936  SRFVELNATSTGVSECKKLFQEAASELSLTGRRTIIFCDEIHRFNKAQQDVFLKPVEAGT 995

Query: 134  LDLM--VGEGPSARSVKINLSR---FTLIAAT 160
            + L+    E PS +     LSR   FTL + T
Sbjct: 996  VTLIGATTENPSFKVASALLSRCRTFTLRSLT 1027


>gi|315426144|dbj|BAJ47789.1| AAA family ATPase [Candidatus Caldiarchaeum subterraneum]
          Length = 726

 Score = 42.4 bits (98), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 36/70 (51%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL------EDRDV 108
           VL  GPPG GKT LA+ VA E   NF   +GP I     G+  A L  +      E   +
Sbjct: 218 VLLYGPPGCGKTLLAKAVATEAEANFILINGPEIMNKYYGETEARLREIFRKAEEEAPSI 277

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 278 IFIDEIDAIA 287



 Score = 39.7 bits (91), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL  GPPG GKT LA+ VA E   NF +  GP I
Sbjct: 491 VLLYGPPGCGKTLLAKAVATESEANFITIKGPEI 524


>gi|300725894|ref|ZP_07059357.1| cell division protein FtsH [Prevotella bryantii B14]
 gi|299776831|gb|EFI73378.1| cell division protein FtsH [Prevotella bryantii B14]
          Length = 695

 Score = 42.4 bits (98), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 91/226 (40%), Gaps = 44/226 (19%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ  A   ++  +E  K   +  D         L VGPPG GKT LA+ VA E 
Sbjct: 198 TFKDVAGQEGAKQEVEEIVEFLKNPKKYTDLGGKIPKGALLVGPPGTGKTLLAKAVAGEA 257

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG       V   A  +  L    +++   ++FIDEI  +     +   PAM 
Sbjct: 258 GVPFFSMSGSDFVEMFVGVGASRVRDLFRQAKEKAPCIIFIDEIDAVGRARSK--NPAM- 314

Query: 131 DFQLDLMVGEGPSARSVKINL-----------SRFTLIAATTRVGLLTNPL--QDRFGIP 177
                     G   R   +N            S   ++AAT RV +L   L    RF   
Sbjct: 315 ---------GGNDERENTLNALLTEMDGFGTNSGVIILAATNRVDMLDKALLRAGRFDRE 365

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAG 223
           I ++  ++ + K I     K     +  + + +I + SR TP  +G
Sbjct: 366 IHVDLPDLNERKAIFNVHLK----PIKVDKSVDIDLLSRQTPGFSG 407


>gi|284161864|ref|YP_003400487.1| ATPase AAA [Archaeoglobus profundus DSM 5631]
 gi|284011861|gb|ADB57814.1| AAA ATPase central domain protein [Archaeoglobus profundus DSM
           5631]
          Length = 349

 Score = 42.4 bits (98), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 85/194 (43%), Gaps = 24/194 (12%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIE----AAKARAEALDHVLFVGPPGLGKTTLAQV 73
           +  +++   +E+  GQ EA   ++V ++      K    A  +VLF GPPG GKT  A+ 
Sbjct: 92  ETEIVKDVKIEDVVGQEEAKKKVRVILKYLQNPEKFGKWAPKNVLFYGPPGTGKTMTAKA 151

Query: 74  VARELGVNFRSTSGPVI--AKAGDLAALLTNLEDRD------VLFIDEIHRLSIIVEEIL 125
           +A E  V F S     +     GD A  +  L +R       ++F+DE   ++      L
Sbjct: 152 LANEANVPFISVKSTKLIGEHVGDGARRIHELYERARQVAPCIVFLDEFDSIA------L 205

Query: 126 YPAMEDFQLDLMVGEGPSARSVKIN----LSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
             + +D + D  V E  +A   +++          IAAT R+ L+   ++ RF   I   
Sbjct: 206 DRSYQDLRGD--VSEVVNALLTELDGIEKNEGICTIAATNRIELIDPSIRSRFEEEIEFT 263

Query: 182 FYEIEDLKTIVQRG 195
              +E+   I++  
Sbjct: 264 LPSLEERLKILENN 277


>gi|291087564|ref|ZP_06572003.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           sp. M62/1]
 gi|291074653|gb|EFE12017.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           sp. M62/1]
          Length = 443

 Score = 42.4 bits (98), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 28/134 (20%)

Query: 19  ISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKAR-----AEALD----HVLFVGPPG 64
           I+LL+P+ ++EF      GQ EA   L V +     R     ++ +D    ++L +GP G
Sbjct: 72  INLLKPKEIKEFLDEYVVGQEEAKKVLSVAVYNHYKRITSQGSQDVDLQKSNILMLGPTG 131

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRD-------VLF 110
            GKT LA  +A+ L V F       + +AG +   + N+        D D       +++
Sbjct: 132 SGKTYLANTLAKILNVPFAVADATTLTEAGYVGEDVENILLKIIQAADYDISKAEYGIIY 191

Query: 111 IDEIHRLSIIVEEI 124
           IDEI +++   E +
Sbjct: 192 IDEIDKITKKSENV 205


>gi|160894591|ref|ZP_02075367.1| hypothetical protein CLOL250_02143 [Clostridium sp. L2-50]
 gi|156863902|gb|EDO57333.1| hypothetical protein CLOL250_02143 [Clostridium sp. L2-50]
          Length = 640

 Score = 42.4 bits (98), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 98/224 (43%), Gaps = 42/224 (18%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL VGPPG GKT +A+ VA E GV F S SG    +   G  A+ + +L D        +
Sbjct: 218 VLLVGPPGTGKTLMAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFDEAKKNAPCI 277

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN-----LSRF------TLI 157
           +FIDEI  ++              Q    +G G   R   +N     +  F       ++
Sbjct: 278 IFIDEIDAVA-------------RQRGTGLGGGHDEREQTLNQLLVEMDGFGVNEGIIVL 324

Query: 158 AATTRVGLLTNPL--QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRS 215
           AAT RV +L + +    RF   + +N  +++  + I++   K   LA  D    +IA   
Sbjct: 325 AATNRVDILDHAILRPGRFDRKVFVNRPDVKGREEILKVHTKNKPLA-EDVNLNDIA--- 380

Query: 216 RGTPRIAGRLLRRVRDFAEVAHAK----TITREIADAALLRLAI 255
           R T   AG  L  + + A +  AK     I +E  D + +++ I
Sbjct: 381 RTTAGFAGADLENLMNEAAICAAKDNRAYIVKEDVDKSFIKVGI 424


>gi|148272023|ref|YP_001221584.1| cell division protein, membrane-bound ATP-dependent protease
           [Clavibacter michiganensis subsp. michiganensis NCPPB
           382]
 gi|147829953|emb|CAN00878.1| cell division protein, membrane-bound ATP-dependent protease
           [Clavibacter michiganensis subsp. michiganensis NCPPB
           382]
          Length = 666

 Score = 42.4 bits (98), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 104/247 (42%), Gaps = 52/247 (21%)

Query: 34  VEACSNLKVFI-EAAKARAEAL---DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPV 89
           +E    +K F+ E AK +A        VL  GPPG GKT LA+ VA E GV F S SG  
Sbjct: 173 IEELEEIKDFLKEPAKFQAVGARIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSD 232

Query: 90  IAK--AGDLAALLTNLEDR------DVLFIDEI-----HRLSIIVEEILYPAMEDFQLDL 136
             +   G  A+ + +L ++       ++F+DEI     HR +                  
Sbjct: 233 FVEMFVGVGASRVRDLFEQAKQNAPAIIFVDEIDAVGRHRGA------------------ 274

Query: 137 MVGEGPSARSVKINL-----------SRFTLIAATTRVGLLTNPL--QDRFGIPIRLNFY 183
            VG G   R   +N            +   LIAAT R  +L   L    RF   I ++  
Sbjct: 275 GVGGGNDEREQTLNQLLVEMDGFDVKTNVILIAATNRPDVLDPALLRPGRFDRQIGVDAP 334

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           +++  K I++   +   LA    A  ++ + +R TP   G  L  V + A +  A++  +
Sbjct: 335 DLQGRKQILEVHGRGKPLA----AGVDLEVLARKTPGFTGADLANVLNEAALLTARSNAQ 390

Query: 244 EIADAAL 250
            I D AL
Sbjct: 391 LIDDRAL 397


>gi|146328648|ref|YP_001209397.1| recombination factor protein RarA [Dichelobacter nodosus VCS1703A]
 gi|146232118|gb|ABQ13096.1| ATPase, AAA family domain protein [Dichelobacter nodosus VCS1703A]
          Length = 429

 Score = 42.4 bits (98), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 49/148 (33%), Positives = 72/148 (48%), Gaps = 17/148 (11%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRPRTL E+ GQ   V   + L V +E    R +    VL+ G PG GKTTLA ++A   
Sbjct: 18  LRPRTLAEYVGQQHIVGQGTPLAVAVE----RKQPFSMVLW-GAPGCGKTTLALLLAHLF 72

Query: 79  GVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
              F   S        + +A   A L      + +LFIDEIHR +   ++ L P +E+  
Sbjct: 73  DAEFIRLSAVFSGVKEVREASIQAQLFHQNGRQTLLFIDEIHRFNKAQQDALLPDIENGA 132

Query: 134 LDLMVG---EGPSARSVKINLSRFTLIA 158
           + + +G   E P+    +  LSR  ++A
Sbjct: 133 V-IFIGATTENPAFHLNRALLSRVRVLA 159


>gi|91786625|ref|YP_547577.1| FtsH-2 peptidase [Polaromonas sp. JS666]
 gi|91695850|gb|ABE42679.1| membrane protease FtsH catalytic subunit [Polaromonas sp. JS666]
          Length = 609

 Score = 42.4 bits (98), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           VL VGPPG GKT LA+ VA E GV F S SG    +   G  AA + +L ++       +
Sbjct: 196 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEMFVGGGAARVRDLFEQARSMAPAI 255

Query: 109 LFIDEIHRL 117
           +FIDE+  L
Sbjct: 256 IFIDELDAL 264


>gi|82539183|ref|XP_724000.1| replication factor C, 40 kDa subunit [Plasmodium yoelii yoelii
          str. 17XNL]
 gi|23478491|gb|EAA15565.1| replication factor C, 40 kDa subunit [Plasmodium yoelii yoelii]
          Length = 330

 Score = 42.4 bits (98), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+ L++   Q  A S LK  I     + + + H++F GPPG GKT+    +A EL
Sbjct: 11 RPKKLDDIVHQTNAISMLKEVI-----KTKNMPHLIFHGPPGTGKTSAINALAHEL 61


>gi|311069313|ref|YP_003974236.1| class III heat-shock ATP-dependent LonA protease [Bacillus
           atrophaeus 1942]
 gi|310869830|gb|ADP33305.1| class III heat-shock ATP-dependent LonA protease [Bacillus
           atrophaeus 1942]
          Length = 774

 Score = 42.4 bits (98), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 76/197 (38%), Gaps = 58/197 (29%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF------------------RSTSGPV-------IA 91
           +   GPPG+GKT+LA+ +A+ +G +F                  R+  G +       + 
Sbjct: 350 LCLAGPPGVGKTSLAKSIAKSMGRSFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMK 409

Query: 92  KAGDLAALLTNLEDRDVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPS 143
           KAG L           V  +DEI ++        S  + E+L P       D  + E   
Sbjct: 410 KAGKLNP---------VFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSTFSDHYIEEN-- 458

Query: 144 ARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL---------KTIVQR 194
                 +LS+   IA    +  +  PL+DR  I     + EIE L         K + + 
Sbjct: 459 -----FDLSKVLFIATANNLATIPGPLRDRMEIINISGYTEIEKLEIVKDHLLPKQLKEH 513

Query: 195 GAKLTGLAVTDEAACEI 211
           G K   L + D+A  +I
Sbjct: 514 GLKKGNLQIRDQAILDI 530


>gi|294670435|ref|ZP_06735317.1| hypothetical protein NEIELOOT_02154 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307899|gb|EFE49142.1| hypothetical protein NEIELOOT_02154 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 336

 Score = 42.4 bits (98), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +AR+L V F       + +AG    D+  ++T L        
Sbjct: 27  NILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDV 86

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 87  EKAQRGIVYIDEIDKIS 103


>gi|237747618|ref|ZP_04578098.1| DNA-binding ATP-dependent protease La [Oxalobacter formigenes
           OXCC13]
 gi|229378980|gb|EEO29071.1| DNA-binding ATP-dependent protease La [Oxalobacter formigenes
           OXCC13]
          Length = 807

 Score = 42.4 bits (98), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 99/231 (42%), Gaps = 42/231 (18%)

Query: 12  VSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTT 69
           +S ED  DI+  R    E+  G  +    +  F+   K   E    +L F+GPPG+GKT+
Sbjct: 327 ISSEDRTDIAEARKILDEDHYGLEKVKKRILEFLAVHKLNPEGKSPLLCFIGPPGVGKTS 386

Query: 70  LAQVVARELGVNF-RSTSGPVIAKA-------GDLAALLTNL--------EDRDVLFIDE 113
           L Q +A+  G  F R + G V  +A         + AL  N+         +  V+ +DE
Sbjct: 387 LGQSIAKATGREFVRVSMGGVHDEAEIRGHRRTYIGALPGNIIQAIRRAGTNNCVMLLDE 446

Query: 114 IHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
           + +L        S  + E+L PA      D  +       +V  +LS+   I        
Sbjct: 447 VDKLGNGVHGDPSAALLEVLDPAQNSTFRDNYL-------AVPFDLSKVMFICTANNPDT 499

Query: 166 LTNPLQDRFGIPIRLNFYEIED-----LKTIVQRGAKLTGLAVTDEAACEI 211
           +  PL+DR  + I+L  Y  ++     L+ +++R  +  GL   +   C+I
Sbjct: 500 IPGPLRDRLEM-IQLPGYTEQEKTQIALRYLIKRQREENGLKPEN---CDI 546


>gi|182418145|ref|ZP_02949445.1| putative Cell division protease FtsH [Clostridium butyricum 5521]
 gi|237666212|ref|ZP_04526199.1| cell division protease FtsH family protein [Clostridium butyricum
           E4 str. BoNT E BL5262]
 gi|182377963|gb|EDT75503.1| putative Cell division protease FtsH [Clostridium butyricum 5521]
 gi|237658302|gb|EEP55855.1| cell division protease FtsH family protein [Clostridium butyricum
           E4 str. BoNT E BL5262]
          Length = 703

 Score = 42.4 bits (98), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 36/69 (52%), Gaps = 7/69 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ EA  +LK  I+     A+  +        VL VGPPG GKT +A+ VA E 
Sbjct: 169 TFDDVAGQEEAKESLKEVIDFLNCPAKYTEIGAKLPKGVLLVGPPGTGKTLIAKAVAGEA 228

Query: 79  GVNFRSTSG 87
            V F S SG
Sbjct: 229 KVPFFSLSG 237


>gi|149045257|gb|EDL98343.1| Werner helicase interacting protein 1, isoform CRA_a [Rattus
           norvegicus]
          Length = 334

 Score = 42.4 bits (98), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 19/105 (18%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75
           +RP TL+++ GQ  A      L+  +E  +     +  ++  GPPG GKTTLA ++A   
Sbjct: 226 MRPDTLQDYIGQSRAVGQETLLRSLLETNE-----IPSLILWGPPGCGKTTLAHIIANNS 280

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDE 113
           ++  + F + S    AK  D+  ++   ++       + +LFIDE
Sbjct: 281 KKHSIRFVTLSA-TNAKTNDVRDVIKQAQNEKSFFKRKTILFIDE 324


>gi|154339832|ref|XP_001565873.1| vesicular transport protein (CDC48 homologue) [Leishmania
           braziliensis MHOM/BR/75/M2904]
 gi|134063191|emb|CAM45391.1| putative vesicular transport protein (CDC48 homologue) [Leishmania
           braziliensis MHOM/BR/75/M2904]
          Length = 666

 Score = 42.4 bits (98), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 20/39 (51%), Positives = 24/39 (61%), Gaps = 3/39 (7%)

Query: 53  ALDH---VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
            LDH   VL  GPPG GKT +A+ +A + G NF S  GP
Sbjct: 403 GLDHPVGVLLYGPPGCGKTLVAKAIANQSGANFISIKGP 441



 Score = 38.1 bits (87), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 32/66 (48%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL------EDRDV 108
           VL  GPPG+GKT L   +A  L V     S P I    +GD  A L NL          +
Sbjct: 130 VLLHGPPGVGKTRLVHAIAGSLQVPLFFVSAPEIVSGISGDSEAKLRNLFMDAIAASPSI 189

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 190 VFIDEI 195


>gi|308800808|ref|XP_003075185.1| Nuclear AAA ATPase (VCP subfamily) (ISS) [Ostreococcus tauri]
 gi|116061739|emb|CAL52457.1| Nuclear AAA ATPase (VCP subfamily) (ISS) [Ostreococcus tauri]
          Length = 566

 Score = 42.4 bits (98), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 97/223 (43%), Gaps = 41/223 (18%)

Query: 15  EDADISLLRPRTLEEFT-----------GQVEACSN-LKVFIEAAKARAEALDHV----- 57
           EDA + + RP  L E             G +E   N LK  +E A+   EA+  V     
Sbjct: 277 EDARVKV-RPSALREVAIEIPNVRWDDVGGLEEVKNRLKEAVEWAEKHPEAMKRVGATPP 335

Query: 58  ---LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD----- 107
              L  GPPG  KT LA+ VA   G NF S  G  +     GD    + ++  R      
Sbjct: 336 KGILLYGPPGCSKTMLARAVANASGRNFISIKGSELFSKWVGDSEKAVRSVFARARSSQP 395

Query: 108 -VLFIDEIHRLSIIVEEILY---PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
            V+FIDE+  L+           P+++D  +  ++GE     +  +N+   T++AAT R 
Sbjct: 396 CVIFIDEVDGLAGTRGGGEQGGAPSVQDRVITQLLGEM-DGLAPTVNV---TIVAATNRP 451

Query: 164 GLLTNPLQDRFGIPIRLNFY----EIEDLKTIVQRGAKLTGLA 202
            L+ + L  R G   RL +      IED  +I+Q   K T LA
Sbjct: 452 DLVDSALL-RPGRFDRLLYVPPPSSIEDRLSILQVLFKNTPLA 493


>gi|157112624|ref|XP_001657594.1| replication factor C, 37kD-subunit, putative [Aedes aegypti]
 gi|108877998|gb|EAT42223.1| replication factor C, 37kD-subunit, putative [Aedes aegypti]
          Length = 147

 Score = 42.4 bits (98), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 33/66 (50%), Gaps = 6/66 (9%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR-E 77
          I   RP+  EE  G  +  S L VF     A      +++  GPPG+GKTT    +AR  
Sbjct: 30 IEKYRPQKFEEIVGNEDTVSRLGVFATQGNA-----PNIIIAGPPGVGKTTTILCLARIL 84

Query: 78 LGVNFR 83
          LG NFR
Sbjct: 85 LGENFR 90


>gi|90961309|ref|YP_535225.1| ATPases of the AAA+ class [Lactobacillus salivarius UCC118]
 gi|90820503|gb|ABD99142.1| ATPases of the AAA+ class [Lactobacillus salivarius UCC118]
          Length = 535

 Score = 42.4 bits (98), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 41/77 (53%), Gaps = 18/77 (23%)

Query: 56  HVLFVGPPGLGKTTLAQVVAR---ELGVNFRST---------SGPVIAKAGDLAALLTNL 103
           H++F GPPG GKTT+A++VAR    LG+   +T          G  +   GDL+  +   
Sbjct: 312 HMIFEGPPGTGKTTVARIVARLFYALGILENTTVIETKRNELEGKWV---GDLSGKINEK 368

Query: 104 EDR---DVLFIDEIHRL 117
            D     VLFIDE H+L
Sbjct: 369 VDSALGGVLFIDEAHQL 385


>gi|83319940|ref|YP_424015.1| ATP-dependent metalloprotease FtsH [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
 gi|83283826|gb|ABC01758.1| ATP-dependent metalloprotease FtsH [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
          Length = 650

 Score = 42.4 bits (98), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 33/60 (55%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           EE +  VE    LK   + A A A A   VL  GPPG GKT LA+ VA E  V+F S +G
Sbjct: 180 EEKSELVELVDYLKQPAKYASAGARAPKGVLMEGPPGTGKTLLAKAVAGEANVSFFSIAG 239


>gi|46204752|ref|ZP_00049541.2| COG0465: ATP-dependent Zn proteases [Magnetospirillum
           magnetotacticum MS-1]
          Length = 485

 Score = 42.4 bits (98), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 42/82 (51%), Gaps = 8/82 (9%)

Query: 45  EAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN 102
           E  K  A     +L VGPPG GKT LA+ VA E GV F S SG    +   G  AA + +
Sbjct: 180 EYGKLGAHIPKGILLVGPPGTGKTLLARAVAGEAGVTFFSISGSEFVEMFVGVGAARVRD 239

Query: 103 LEDR------DVLFIDEIHRLS 118
           L ++       ++FIDE+  L 
Sbjct: 240 LFEQARKSAPAIIFIDELDALG 261


>gi|313158087|gb|EFR57492.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Alistipes sp.
           HGB5]
          Length = 425

 Score = 42.4 bits (98), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 61/127 (48%), Gaps = 29/127 (22%)

Query: 21  LLRPRTLEEFTGQ-------------VEACSNLKVFIEAAKARAEALD--HVLFVGPPGL 65
           LL+P  +++F  Q             V   ++ K  + A K     +D  +++ VGP G 
Sbjct: 75  LLKPAQIKDFLDQYVIGQDDAKRYMAVAVYNHYKRLLYAPKEDEVEIDKSNIVLVGPTGT 134

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL----------EDRDVLFI 111
           GKT +A+ +A+ L V F      V+ +AG    D+ ++L+ L           +R ++FI
Sbjct: 135 GKTLMARTIAKLLKVPFTIVDATVLTEAGYVGEDVESILSRLLQVADYNVEQAERGIVFI 194

Query: 112 DEIHRLS 118
           DEI +++
Sbjct: 195 DEIDKIA 201


>gi|313887429|ref|ZP_07821118.1| DNA polymerase III, subunit gamma and tau [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312923071|gb|EFR33891.1| DNA polymerase III, subunit gamma and tau [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 601

 Score = 42.4 bits (98), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 13/104 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T +E  GQ   C  LK  I+  K     + H  LF GP G+GKT+ A+++AR +   
Sbjct: 13  RPQTFDEMLGQEAICLTLKSAIKQGK-----IAHAYLFCGPRGVGKTSAARILARTINCE 67

Query: 82  FRSTSGPVIAKAGDLAALLT----NLEDRDVL---FIDEIHRLS 118
             +  G       +  A L     N+ + D      +D+I RL+
Sbjct: 68  QLTPQGEACGVCPNCQAALHQRAFNIYELDAASNNSVDDIRRLN 111


>gi|300214188|gb|ADJ78604.1| ATPases of the AAA+ class [Lactobacillus salivarius CECT 5713]
          Length = 535

 Score = 42.4 bits (98), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 41/77 (53%), Gaps = 18/77 (23%)

Query: 56  HVLFVGPPGLGKTTLAQVVAR---ELGVNFRST---------SGPVIAKAGDLAALLTNL 103
           H++F GPPG GKTT+A++VAR    LG+   +T          G  +   GDL+  +   
Sbjct: 312 HMIFEGPPGTGKTTVARIVARLFYALGILENTTVVETKRNELEGKWV---GDLSGKINEK 368

Query: 104 EDR---DVLFIDEIHRL 117
            D     VLFIDE H+L
Sbjct: 369 VDSALGGVLFIDEAHQL 385


>gi|323352805|gb|EGA85107.1| Pex6p [Saccharomyces cerevisiae VL3]
          Length = 952

 Score = 42.4 bits (98), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 4/48 (8%)

Query: 41  KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           ++F    K R+     +LF GPPG GKT +A+ +A    +NF S  GP
Sbjct: 756 ELFTSGMKKRS----GILFYGPPGTGKTLMAKAIATNFSLNFFSVKGP 799


>gi|312880130|ref|ZP_07739930.1| ATP-dependent proteinase [Aminomonas paucivorans DSM 12260]
 gi|310783421|gb|EFQ23819.1| ATP-dependent proteinase [Aminomonas paucivorans DSM 12260]
          Length = 788

 Score = 42.4 bits (98), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 40/76 (52%), Gaps = 2/76 (2%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAK-ARAEALDHVL-FVGPPGLGKTTL 70
           S++  D+ L R    E+  G  E    +  F+   K A  E   HVL FVGPPG+GKT+L
Sbjct: 300 SKDRLDVELARTVLDEDHYGLDEVKGRILEFLSVRKLAGKEMRGHVLCFVGPPGVGKTSL 359

Query: 71  AQVVARELGVNFRSTS 86
           A+ +AR L   F   S
Sbjct: 360 ARSIARSLNRRFVHMS 375


>gi|297288904|ref|XP_001101055.2| PREDICTED: peroxisome biogenesis factor 1 isoform 2 [Macaca
           mulatta]
          Length = 1216

 Score = 42.4 bits (98), Expect = 0.099,   Method: Composition-based stats.
 Identities = 19/32 (59%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT LA V+ARE  +NF S  GP
Sbjct: 851 ILLYGPPGTGKTLLAGVIARESRMNFISVKGP 882


>gi|303279056|ref|XP_003058821.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226459981|gb|EEH57276.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 865

 Score = 42.4 bits (98), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 100/232 (43%), Gaps = 50/232 (21%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVN-FRSTSGP--------------VIAKAGDLAALLT 101
           +  VGPPG+GKT++ Q +AR L    FR + G               V A  G L   L 
Sbjct: 380 ITLVGPPGVGKTSIGQSIARALDRKFFRFSVGGLSDVAEIKGHRRTYVGAMPGKLVQCLK 439

Query: 102 NLE-DRDVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152
           +   D  V+ IDE+ +L        +  + E+L P      LD  +        V ++LS
Sbjct: 440 STGVDNPVVLIDEVDKLGRGYQGDPASALLELLDPEQNGSFLDHYL-------DVPVDLS 492

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR-----GAKLTGLAVTDEA 207
           +   +     +  +  PL DR  + +RL+ Y  ++   I +R       + +G+  ++ +
Sbjct: 493 KVLFVCTANVLDTIPGPLLDRMEV-VRLSGYIADEKNAIARRYLEKNAKERSGVGESEAS 551

Query: 208 ACEIAMRS--RGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257
             + AM+S      R AG     VR+  +  H + I R++A    L+LA  K
Sbjct: 552 ITDQAMKSLIEDYCREAG-----VRNLQK--HLEKIYRKVA----LKLAKSK 592


>gi|255575800|ref|XP_002528799.1| ATP-dependent protease La, putative [Ricinus communis]
 gi|223531802|gb|EEF33621.1| ATP-dependent protease La, putative [Ricinus communis]
          Length = 890

 Score = 42.4 bits (98), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 86/210 (40%), Gaps = 33/210 (15%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKT 68
           ++  + D D+   + R   +  G V+    +  ++   K + +A   VL FVGPPG+GKT
Sbjct: 359 KDSEEHDLDLKAAKERLDSDHYGLVKVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKT 418

Query: 69  TLAQVVARELGVNF-RSTSGPVIAKA----------GDLAALLTNLEDR-----DVLFID 112
           +LA  +A  LG  F R + G V  +A          G +   L +   R      V+ +D
Sbjct: 419 SLASSIATALGRKFVRLSLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLD 478

Query: 113 EIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164
           EI +    V         E+L P       D  +       +V  +LS+   +A   R  
Sbjct: 479 EIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYL-------NVPFDLSKVIFVATANRAQ 531

Query: 165 LLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
            +  PL DR  + I L  Y  E+   I  R
Sbjct: 532 PIPPPLLDRMEV-IELPGYTPEEKLRIAMR 560


>gi|119597247|gb|EAW76841.1| peroxisome biogenesis factor 1, isoform CRA_b [Homo sapiens]
          Length = 1227

 Score = 42.4 bits (98), Expect = 0.099,   Method: Composition-based stats.
 Identities = 19/32 (59%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT LA V+ARE  +NF S  GP
Sbjct: 820 ILLYGPPGTGKTLLAGVIARESRMNFISVKGP 851


>gi|220932329|ref|YP_002509237.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Halothermothrix orenii H 168]
 gi|254763850|sp|B8CY73|CLPX_HALOH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|219993639|gb|ACL70242.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Halothermothrix orenii H 168]
          Length = 416

 Score = 42.4 bits (98), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L VGP G GKT LAQ +AR L V F  T    + +AG    D+  +L  L        
Sbjct: 111 NILMVGPTGCGKTLLAQTLARILDVPFAITDATSLTEAGYVGEDVENILLKLIQAADYDI 170

Query: 104 --EDRDVLFIDEIHRLS 118
              +R +++IDEI +++
Sbjct: 171 EKAERGIIYIDEIDKIA 187


>gi|116753401|ref|YP_842519.1| AAA family ATPase, CDC48 subfamily protein [Methanosaeta
           thermophila PT]
 gi|116664852|gb|ABK13879.1| AAA family ATPase, CDC48 subfamily [Methanosaeta thermophila PT]
          Length = 739

 Score = 42.4 bits (98), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 26/53 (49%), Gaps = 8/53 (15%)

Query: 44  IEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           IE    R E  +H        +L  GPPG GKT +AQ VA E   NF S  GP
Sbjct: 480 IEWPLKRPERFEHMGIKPPKGILLYGPPGTGKTLIAQAVANETNANFISVRGP 532



 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALL------TNLEDRDV 108
           VL  GPPG GKT +A+ VA E G +F S +GP I     G+    L       N     +
Sbjct: 229 VLLYGPPGTGKTLIAKAVANESGASFFSIAGPEIMSKYYGESEQRLREIFEEANSNTPSI 288

Query: 109 LFIDEIHRLS 118
           +FIDE+  ++
Sbjct: 289 VFIDELDSIA 298


>gi|315607707|ref|ZP_07882701.1| ATP-dependent metallopeptidase HflB [Prevotella buccae ATCC 33574]
 gi|315250643|gb|EFU30638.1| ATP-dependent metallopeptidase HflB [Prevotella buccae ATCC 33574]
          Length = 690

 Score = 42.4 bits (98), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 81/183 (44%), Gaps = 29/183 (15%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VL 109
           L VGPPG GKT LA+ VA E GV F S SG       V   A  +  L    +++   ++
Sbjct: 230 LLVGPPGTGKTLLAKAVAGEAGVPFFSMSGSDFVEMFVGVGASRVRDLFRQAKEKAPCII 289

Query: 110 FIDEIH-------RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTR 162
           FIDEI        + S++          +  L  M G G +        S   ++AAT R
Sbjct: 290 FIDEIDAVGRARAKNSMMNGNSEQENTLNALLTEMDGFGTN--------SGVIILAATNR 341

Query: 163 VGLLTNPL--QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPR 220
           V +L   L    RF   I ++  ++ + K I Q    L  + V D  + +I + +R TP 
Sbjct: 342 VDMLDAALLRAGRFDRQIHVDLPDLNERKEIFQ--VHLKPVKVDD--SVDIDLLARQTPG 397

Query: 221 IAG 223
            +G
Sbjct: 398 FSG 400


>gi|297681089|ref|XP_002818269.1| PREDICTED: peroxisome biogenesis factor 1-like [Pongo abelii]
          Length = 1259

 Score = 42.4 bits (98), Expect = 0.100,   Method: Composition-based stats.
 Identities = 19/32 (59%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT LA V+ARE  +NF S  GP
Sbjct: 853 ILLYGPPGTGKTLLAGVIARESRMNFISVKGP 884


>gi|325680665|ref|ZP_08160203.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ruminococcus
           albus 8]
 gi|324107445|gb|EGC01723.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ruminococcus
           albus 8]
          Length = 424

 Score = 42.4 bits (98), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 65/139 (46%), Gaps = 31/139 (22%)

Query: 10  RNVSQEDADISLLRPR----TLEEFT-GQVEACSNLKVFIEAAKARAEALD--------- 55
           +  S ED  I+L +P      L+E+  GQ EA   L V +     R   LD         
Sbjct: 63  KTASAEDG-ITLKKPAEIKAVLDEYVVGQDEAKIALSVAVYNHYKRILTLDDDFDDVEIQ 121

Query: 56  --HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLT-------- 101
             +VL +GP G GKT LAQ +AR L V F       + +AG    D+  +LT        
Sbjct: 122 KSNVLLLGPTGTGKTLLAQTLARLLNVPFAIADATTLTEAGYVGDDVENVLTRLIQAANY 181

Query: 102 NLED--RDVLFIDEIHRLS 118
           N+E+    +++IDEI +++
Sbjct: 182 NVEEASHGIIYIDEIDKIA 200


>gi|228919016|ref|ZP_04082396.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228956507|ref|ZP_04118304.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|229107752|ref|ZP_04237389.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           Rock1-15]
 gi|229125583|ref|ZP_04254616.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           BDRD-Cer4]
 gi|229142872|ref|ZP_04271314.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           BDRD-ST24]
 gi|228640584|gb|EEK96972.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           BDRD-ST24]
 gi|228657900|gb|EEL13705.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           BDRD-Cer4]
 gi|228675725|gb|EEL30932.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           Rock1-15]
 gi|228803197|gb|EEM50018.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228840665|gb|EEM85926.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 612

 Score = 42.4 bits (98), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 177 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 236

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 237 IFIDEI 242


>gi|329119329|ref|ZP_08248015.1| ATP-dependent Clp protease ATP-binding subunit [Neisseria
           bacilliformis ATCC BAA-1200]
 gi|327464474|gb|EGF10773.1| ATP-dependent Clp protease ATP-binding subunit [Neisseria
           bacilliformis ATCC BAA-1200]
          Length = 422

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +AR+L V F       + +AG    D+  ++T L        
Sbjct: 110 NILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDV 169

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 170 EKAQRGIVYIDEIDKIS 186


>gi|315645732|ref|ZP_07898856.1| hypothetical protein PVOR_09650 [Paenibacillus vortex V453]
 gi|315279210|gb|EFU42520.1| hypothetical protein PVOR_09650 [Paenibacillus vortex V453]
          Length = 588

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 5/62 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T+++  GQ +    LK  + +A  +     HV+  GPPG+GKT  A+VV  E   N 
Sbjct: 64  RPQTMDDIVGQKDGLRALKAALCSANPQ-----HVIVYGPPGVGKTAAARVVMEEAKKNP 118

Query: 83  RS 84
           +S
Sbjct: 119 QS 120


>gi|298369174|ref|ZP_06980492.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria sp.
           oral taxon 014 str. F0314]
 gi|298283177|gb|EFI24664.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria sp.
           oral taxon 014 str. F0314]
          Length = 424

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +AR+L V F       + +AG    D+  ++T L        
Sbjct: 112 NILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDV 171

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 172 EKAQRGIVYIDEIDKIS 188


>gi|284046734|ref|YP_003397074.1| DNA polymerase III subunits gamma and tau [Conexibacter woesei DSM
           14684]
 gi|283950955|gb|ADB53699.1| DNA polymerase III, subunits gamma and tau [Conexibacter woesei DSM
           14684]
          Length = 724

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 91/218 (41%), Gaps = 28/218 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPRT  +  GQ      L+  +E    R +     LFVG  G GKT++A+++A  L    
Sbjct: 12  RPRTFSDVVGQTHVVRTLRNAVE----RDKVHHAYLFVGSRGTGKTSMAKILAACLNCE- 66

Query: 83  RSTSGPVIAKAGDLAALLT--NLEDRDVLFIDEIHRLSI-----IVEEILYPAMEDFQLD 135
               GP I   G  ++ ++  N    DV+ +D     S+     + +++ Y  +      
Sbjct: 67  --RGGPTIEPCGVCSSCVSIANATSLDVIEMDAASNNSVDDIRELRDKVAYAPVSGRYKV 124

Query: 136 LMVGEGPSARSVKINLSRFTL---------IAATTRVGLLTNPLQDRFGIPIRLNFY--E 184
            ++ E     S   N    TL         + ATT    +   + DR     R +F    
Sbjct: 125 YILDEAHMLSSAAWNAFLKTLEEPPPHTIFVLATTEANKVLPTVVDRCH---RFDFTRPN 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
           +E++  +++R A    +A+ D+A   +A  + G+ R A
Sbjct: 182 VEEIAGVLRRVADQESIAIPDQAVALVARHATGSFRDA 219


>gi|317153551|ref|YP_004121599.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316943802|gb|ADU62853.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 416

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 66/144 (45%), Gaps = 32/144 (22%)

Query: 7   LLSRNVSQEDADISLLRPRT----LEEFT-GQVEACSNL---------KVFIEAAKARAE 52
           +    VS+E  D  LL P+     L+E+  GQ +A   L         +VF  AA    +
Sbjct: 45  MAQETVSEEFEDGRLLPPQEIKALLDEYVIGQEQAKKILSVAVHNHYKRVFYAAANTGPD 104

Query: 53  ALD----HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD--------LAALL 100
            ++    ++L +GP G GKT LAQ +AR L V F       + +AG         L  LL
Sbjct: 105 EVEIDKSNILLIGPTGSGKTLLAQTLARVLKVPFAIADATTLTEAGYVGEDVENILVQLL 164

Query: 101 TNLE------DRDVLFIDEIHRLS 118
            N +       R +++IDEI +++
Sbjct: 165 QNADYDIDAASRGIIYIDEIDKVA 188


>gi|260187916|ref|ZP_05765390.1| Mg chelatase [Mycobacterium tuberculosis CPHL_A]
          Length = 549

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 87/343 (25%), Positives = 133/343 (38%), Gaps = 93/343 (27%)

Query: 27  LEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ-------------- 72
           L +  GQ +A    +  +E A A A    H++  GPPG+GKT LAQ              
Sbjct: 191 LADVVGQSQA----RFAVEVAAAGAH---HLMLTGPPGVGKTMLAQRLPGLLPSLSGSES 243

Query: 73  --VVARELGVNFRSTSGPVIAK--------AGDLAALL-----------TNLEDRDVLFI 111
             V A        S   P+I +        +  +AAL+            +   R VLF+
Sbjct: 244 LEVTAIHSVAGLLSGDTPLITRPPFVAPHHSSSVAALVGGGSGMARPGAVSRAHRGVLFL 303

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLI-------------- 157
           DE   +S+   E L   +ED ++ L   +G     V    +RF L+              
Sbjct: 304 DECAEISLSALEALRTPLEDGEIRLARRDG-----VACYPARFQLVLAANPCPCAPADPQ 358

Query: 158 -----AATTR--VGLLTNPLQDRFGIPIRLN--------FYEIEDLKTIVQRGAKLTGLA 202
                AAT R  +G L+ PL DR  + ++++          + E    + QR      +A
Sbjct: 359 DCICAAATKRRYLGKLSGPLLDRVDLRVQMHRLRAGAFSAADGESTSQVRQR------VA 412

Query: 203 VTDEAACEIAMRSRG---TPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259
           +  EAA +   R  G      ++G LLR  R F   + A    R   D  LL +     G
Sbjct: 413 LAREAAAQ-RWRPHGFRTNAEVSGPLLR--RKFRPSSAAMLPLRTALDRGLLSI----RG 465

Query: 260 FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            D+  LR    +A   G    GI+ ++A LS  +     +I+P
Sbjct: 466 VDR-TLRVAWSLADLAGRTSPGIDEVAAALSFRQTGSTTMIDP 507


>gi|288930616|ref|YP_003434676.1| ATPase AAA, CDC48 subfamily [Ferroglobus placidus DSM 10642]
 gi|288892864|gb|ADC64401.1| AAA family ATPase, CDC48 subfamily [Ferroglobus placidus DSM 10642]
          Length = 791

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 8/76 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL--EDRD----V 108
           VL  GPPG GKT +A+ VA E+  +F   SGP I     G+    L  +  E R+    +
Sbjct: 216 VLLYGPPGTGKTLIAKAVANEVNAHFIPISGPEIMSKYYGESEQRLREIFEEARENAPSI 275

Query: 109 LFIDEIHRLSIIVEEI 124
           +FIDEI  ++   EE+
Sbjct: 276 IFIDEIDSIAPKREEV 291



 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 550 ILLYGPPGTGKTLLAKAVANESNANFISVKGP 581


>gi|228989273|ref|ZP_04149266.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus pseudomycoides
           DSM 12442]
 gi|228995456|ref|ZP_04155126.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus mycoides
           Rock3-17]
 gi|228764317|gb|EEM13194.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus mycoides
           Rock3-17]
 gi|228770483|gb|EEM19054.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus pseudomycoides
           DSM 12442]
          Length = 616

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 181 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 240

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 241 IFIDEI 246


>gi|218197842|gb|EEC80269.1| hypothetical protein OsI_22249 [Oryza sativa Indica Group]
          Length = 681

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 38/66 (57%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL VGPPG GKT LA+ +A E GV F S SG    +   G  A+ + +L DR       +
Sbjct: 252 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMFVGVGASRVRDLFDRPKASAPCL 311

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 312 VFIDEI 317


>gi|70951019|ref|XP_744784.1| replication factor C, subunit 2 [Plasmodium chabaudi chabaudi]
 gi|56524878|emb|CAH75042.1| replication factor C, subunit 2, putative [Plasmodium chabaudi
          chabaudi]
          Length = 330

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+ L++   Q  A S LK  I     + + + H++F GPPG GKT+    +A EL
Sbjct: 11 RPKKLDDIVHQTNAISMLKEVI-----KTKNMPHLIFHGPPGTGKTSAINALAHEL 61


>gi|46109186|ref|XP_381651.1| hypothetical protein FG01475.1 [Gibberella zeae PH-1]
          Length = 790

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 57/118 (48%), Gaps = 16/118 (13%)

Query: 13  SQEDADISLLRPRT-LEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPG 64
           S++D+++   +  T  ++  G  EA   L+  +E  K   +  D        VL VGPPG
Sbjct: 291 SKQDSEVKAEKQNTRFQDVHGCDEAKEELQEVVEFLKNPEKFSDLGAKLPKGVLLVGPPG 350

Query: 65  LGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEI 114
            GKT LA+ VA E GV F   SG       V   A  +  L T  +++   ++FIDE+
Sbjct: 351 TGKTLLARAVAGEAGVPFFYMSGSEFDEIFVGVGAKRVRELFTAAKNKSPAIVFIDEL 408


>gi|292491672|ref|YP_003527111.1| ATP-dependent metalloprotease FtsH [Nitrosococcus halophilus Nc4]
 gi|291580267|gb|ADE14724.1| ATP-dependent metalloprotease FtsH [Nitrosococcus halophilus Nc4]
          Length = 641

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL------EDRDV 108
           +L +GPPG GKT LA+ VA E GV F S SG    +   G  AA + ++      E   +
Sbjct: 220 ILLMGPPGTGKTLLAKAVAGEAGVPFYSISGSDFIEMFVGVGAARVRDMFKAAKEEAPSI 279

Query: 109 LFIDEI 114
           LFIDEI
Sbjct: 280 LFIDEI 285


>gi|229148475|ref|ZP_04276732.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus m1550]
 gi|228635017|gb|EEK91589.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus m1550]
          Length = 585

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 150 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 209

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 210 IFIDEI 215


>gi|220912905|ref|YP_002488214.1| ATP-dependent protease ATP-binding subunit ClpX [Arthrobacter
           chlorophenolicus A6]
 gi|254763831|sp|B8HA33|CLPX_ARTCA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|219859783|gb|ACL40125.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Arthrobacter
           chlorophenolicus A6]
          Length = 426

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------ED 105
           A  ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+        D
Sbjct: 119 AKSNILLIGPTGCGKTYLAQTLARRLNVPFAVADATALTEAGYVGEDVENILLKLIQAAD 178

Query: 106 RDV-------LFIDEIHRLS 118
            DV       ++IDEI ++S
Sbjct: 179 YDVKKAEQGIIYIDEIDKIS 198


>gi|261403931|ref|YP_003240172.1| ATP-dependent metalloprotease FtsH [Paenibacillus sp. Y412MC10]
 gi|329925503|ref|ZP_08280377.1| ATP-dependent metallopeptidase HflB [Paenibacillus sp. HGF5]
 gi|261280394|gb|ACX62365.1| ATP-dependent metalloprotease FtsH [Paenibacillus sp. Y412MC10]
 gi|328939786|gb|EGG36126.1| ATP-dependent metallopeptidase HflB [Paenibacillus sp. HGF5]
          Length = 689

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 203 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 262

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 263 IFIDEI 268


>gi|228970254|ref|ZP_04130914.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228789489|gb|EEM37408.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
          Length = 612

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 177 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 236

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 237 IFIDEI 242


>gi|224088822|ref|XP_002308554.1| predicted protein [Populus trichocarpa]
 gi|222854530|gb|EEE92077.1| predicted protein [Populus trichocarpa]
          Length = 723

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ +A E GV F S SG       V   A  +  L +  + R   +
Sbjct: 268 VLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCI 327

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 328 IFIDEI 333


>gi|150014992|ref|YP_001307246.1| ATP-dependent metalloprotease FtsH [Clostridium beijerinckii NCIMB
           8052]
 gi|149901457|gb|ABR32290.1| ATP-dependent metalloprotease FtsH [Clostridium beijerinckii NCIMB
           8052]
          Length = 602

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 49/104 (47%), Gaps = 15/104 (14%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78
           T E+  G  E  + L+  +E  K  ++ +         VL VGPPG GKT LA+ +A E 
Sbjct: 157 TFEDIAGADEEKAELEEIVEFLKLPSKYIQIGARIPKGVLLVGPPGTGKTLLAKAIAGEA 216

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEI 114
           GV F S SG       V   A  + +L    +     ++FIDEI
Sbjct: 217 GVPFFSISGSDFVEMFVGVGASRVRSLFEEAKKNSPCIVFIDEI 260


>gi|327276150|ref|XP_003222833.1| PREDICTED: replication factor C subunit 5-like [Anolis
          carolinensis]
          Length = 342

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 8/77 (10%)

Query: 5  EGLLSRNVSQEDADISLL---RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
          EG   R V+ + A++  +   RP+TL +     +  S ++ FI   +     L H+LF G
Sbjct: 8  EGPSERTVAVKSANLPWVEKYRPQTLNDLISHQDILSTIQKFISEDR-----LPHLLFYG 62

Query: 62 PPGLGKTTLAQVVAREL 78
          PPG GKT+     A++L
Sbjct: 63 PPGTGKTSTILACAKQL 79


>gi|323465366|gb|ADX77519.1| cell division protein FtsH, putative [Staphylococcus
           pseudintermedius ED99]
          Length = 704

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 260

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 261 IFIDEI 266


>gi|313247630|emb|CBY15796.1| unnamed protein product [Oikopleura dioica]
          Length = 500

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 75/174 (43%), Gaps = 36/174 (20%)

Query: 20  SLLRPRTLEEFTGQVEA-CSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           ++ RP  +  F+ +V++   ++K+    A    +A  +VL  GPPG GKT  A+ +A + 
Sbjct: 321 TVKRPNYI--FSEKVQSKVEDIKLVTRNALINKQAHRNVLLYGPPGTGKTLYAKSLATDA 378

Query: 79  GVNFRSTSGPVIAKAGDLAAL----LTNLEDRD----VLFIDEIHRLSIIVEEILYPAME 130
            + +   SG  +A  G  A      L N  D+     VLFIDE        E  L P  E
Sbjct: 379 NMQYAIMSGGDVAPLGAQATYELNKLFNWADKSKKGLVLFIDE-------AEAFLRPRDE 431

Query: 131 DFQLDLMVGEGPSARSVKINL---------SRFTLIAATTRVGLLTNPLQDRFG 175
           +          P  RSV IN          ++  ++ AT +V  L + + DR  
Sbjct: 432 NM--------SPELRSV-INTFLARTGEPSNKMQIVLATNQVNQLDSAVLDRMN 476


>gi|313201271|ref|YP_004039929.1| ATP-dependent clp protease, ATP-binding subunit clpx [Methylovorus
           sp. MP688]
 gi|312440587|gb|ADQ84693.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylovorus
           sp. MP688]
          Length = 423

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 51/113 (45%), Gaps = 26/113 (23%)

Query: 32  GQVEACSNLKVFI---------EAAKARAE---ALDHVLFVGPPGLGKTTLAQVVARELG 79
           GQ +A  NL V +          A K + E   A  ++L +GP G GKT LAQ +AR L 
Sbjct: 78  GQTQAKKNLAVAVYNHYKRLDQSATKDKDEVEIAKSNILVIGPTGSGKTLLAQTLARLLD 137

Query: 80  VNFRSTSGPVIAKAGDLAALLTNL--------------EDRDVLFIDEIHRLS 118
           V F       + +AG +   + N+                R +++IDEI ++S
Sbjct: 138 VPFVMADATTLTEAGYVGEDVENIMQKLLQKCDYDIEKAQRGIVYIDEIDKIS 190


>gi|301299480|ref|ZP_07205754.1| ATPase, AAA family [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300852914|gb|EFK80524.1| ATPase, AAA family [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 246

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 41/77 (53%), Gaps = 18/77 (23%)

Query: 56  HVLFVGPPGLGKTTLAQVVAR---ELGVNFRST---------SGPVIAKAGDLAALLTNL 103
           H++F GPPG GKTT+A++VAR    LG+   +T          G  +   GDL+  +   
Sbjct: 56  HMIFEGPPGTGKTTVARIVARLFYALGILENTTVVETKRNELEGKWV---GDLSGKINEK 112

Query: 104 EDR---DVLFIDEIHRL 117
            D     VLFIDE H+L
Sbjct: 113 VDSALGGVLFIDEAHQL 129


>gi|229039971|ref|ZP_04189735.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus AH676]
 gi|228727379|gb|EEL78572.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus AH676]
          Length = 582

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 147 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 206

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 207 IFIDEI 212


>gi|114614482|ref|XP_001167033.1| PREDICTED: peroxisome biogenesis factor 1 isoform 1 [Pan
           troglodytes]
          Length = 1226

 Score = 42.4 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 19/32 (59%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT LA V+ARE  +NF S  GP
Sbjct: 820 ILLYGPPGTGKTLLAGVIARESRMNFISVKGP 851


>gi|75116392|sp|Q67WJ2|FTSH6_ORYSJ RecName: Full=ATP-dependent zinc metalloprotease FTSH 6,
           chloroplastic; Short=OsFTSH6; Flags: Precursor
 gi|51535393|dbj|BAD37263.1| putative chloroplast protease [Oryza sativa Japonica Group]
 gi|51535559|dbj|BAD37477.1| putative chloroplast protease [Oryza sativa Japonica Group]
          Length = 686

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 38/66 (57%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL VGPPG GKT LA+ +A E GV F S SG    +   G  A+ + +L DR       +
Sbjct: 257 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMFVGVGASRVRDLFDRAKASAPCL 316

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 317 VFIDEI 322


>gi|14289171|dbj|BAB59061.1| Pex1p-634del690 [Homo sapiens]
 gi|119597248|gb|EAW76842.1| peroxisome biogenesis factor 1, isoform CRA_c [Homo sapiens]
          Length = 1226

 Score = 42.4 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 19/32 (59%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT LA V+ARE  +NF S  GP
Sbjct: 820 ILLYGPPGTGKTLLAGVIARESRMNFISVKGP 851


>gi|642339|emb|CAA58229.1| peroxisome biogenesis invlved proteind [Saccharomyces cerevisiae]
          Length = 889

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 4/48 (8%)

Query: 41  KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           ++F    K R+     +LF GPPG GKT +A+ +A    +NF S  GP
Sbjct: 615 ELFTSGMKKRS----GILFYGPPGTGKTLMAKAIATNFSLNFFSVKGP 658


>gi|326937857|gb|AEA13753.1| cell division protein ftsH [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 633

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 257

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 258 IFIDEI 263


>gi|295702308|ref|YP_003595383.1| cell division protease FtsH [Bacillus megaterium DSM 319]
 gi|294799967|gb|ADF37033.1| cell division protease FtsH [Bacillus megaterium DSM 319]
          Length = 636

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 200 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 259

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 260 IFIDEI 265


>gi|312195812|ref|YP_004015873.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Frankia sp.
           EuI1c]
 gi|311227148|gb|ADP80003.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Frankia sp.
           EuI1c]
          Length = 430

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 60/133 (45%), Gaps = 35/133 (26%)

Query: 21  LLRPRTLEEF-----TGQVEACSNLKVFI---------------EAAKARAE-ALDHVLF 59
           L +PR + EF      GQ  A   L V +               ++AKA  E A  ++L 
Sbjct: 61  LPKPREIYEFLDGYVVGQETAKKTLSVAVYNHYKRIQAGGSAPSDSAKADVELAKSNILL 120

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---EDRDV---- 108
           +GP G GKT LAQ +AR L V F       + +AG    D+  +L  L    D DV    
Sbjct: 121 LGPTGCGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKKAE 180

Query: 109 ---LFIDEIHRLS 118
              ++IDE+ +++
Sbjct: 181 TGIIYIDEVDKIA 193


>gi|225012270|ref|ZP_03702707.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Flavobacteria
           bacterium MS024-2A]
 gi|225003825|gb|EEG41798.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Flavobacteria
           bacterium MS024-2A]
          Length = 411

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 63/142 (44%), Gaps = 32/142 (22%)

Query: 9   SRNVSQEDADISLLRPRTLEEF-----TGQ--------VEACSNLKVFIEAAKARAE--- 52
           S + + E   I L  P+ ++ F      GQ        V   ++ K  ++ A  +     
Sbjct: 45  SSDTTSEQVQIELKPPKEIKAFLDTYVIGQESSKRVLSVAVYNHYKRLVQTASKKENDPV 104

Query: 53  --ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL--- 103
                +VL VGP G GKT LAQ ++R L V        V+ +AG    D+ ++L+ L   
Sbjct: 105 EIQKSNVLIVGPTGTGKTLLAQTISRLLNVPLAIVDATVLTEAGYVGEDVESILSRLLQA 164

Query: 104 EDRDV-------LFIDEIHRLS 118
            D DV       +FIDEI +++
Sbjct: 165 SDYDVDRAQKGIVFIDEIDKIA 186


>gi|212703544|ref|ZP_03311672.1| hypothetical protein DESPIG_01589 [Desulfovibrio piger ATCC 29098]
 gi|212673044|gb|EEB33527.1| hypothetical protein DESPIG_01589 [Desulfovibrio piger ATCC 29098]
          Length = 668

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 32/60 (53%), Gaps = 3/60 (5%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           +E +  VE  SN K F        +    VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 167 DELSEVVEFLSNPKKFTRLGGRIPKG---VLLVGPPGTGKTLLARAVAGEAGVPFFSISG 223


>gi|145613239|ref|XP_001412726.1| hypothetical protein MGG_11141 [Magnaporthe oryzae 70-15]
 gi|145020358|gb|EDK04487.1| hypothetical protein MGG_11141 [Magnaporthe oryzae 70-15]
          Length = 808

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 78/195 (40%), Gaps = 42/195 (21%)

Query: 43  FIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNF------------------R 83
           FI   K R      +L FVGPPG+GKT++ + +AR L   +                  R
Sbjct: 584 FIAVGKLRGTVEGKILCFVGPPGVGKTSIGKSIARALNREYYRFSVGGLTDVAEIKGHRR 643

Query: 84  STSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL--------SIIVEEILYPAMEDFQLD 135
           +  G +  +   + AL     +  ++ IDEI ++        S  + E+L P      LD
Sbjct: 644 TYVGALPGRV--IQALKKCNTENPLILIDEIDKMGSGYKGDPSSALLELLDPEQNSSFLD 701

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR- 194
             +        V ++LS+   +        +  PL DR  + IRL+ Y  ++   I QR 
Sbjct: 702 HYM-------DVPVDLSKVLFVCTANMTDTIPRPLLDRMEV-IRLSGYVSDEKMAIAQRY 753

Query: 195 ----GAKLTGLAVTD 205
                 +L GL   D
Sbjct: 754 LAPAAKELAGLEKAD 768


>gi|50955660|ref|YP_062948.1| cell division protein [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50952142|gb|AAT89843.1| cell division protein [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 667

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 36/69 (52%), Gaps = 7/69 (10%)

Query: 26  TLEEFTGQVEACSNL---KVFI-EAAKARAEAL---DHVLFVGPPGLGKTTLAQVVAREL 78
           T E+  G  EA   L   K F+ E AK +A        VL  GPPG GKT LA+ VA E 
Sbjct: 162 TFEDVAGSDEAIEELEEIKDFLKEPAKFQAVGARIPKGVLLYGPPGTGKTLLARAVAGEA 221

Query: 79  GVNFRSTSG 87
           GV F S SG
Sbjct: 222 GVPFYSISG 230


>gi|15612648|ref|NP_240951.1| cell-division protein (ATP-dependent Zn metallopeptidase) [Bacillus
           halodurans C-125]
 gi|10172697|dbj|BAB03804.1| cell-division protein (ATP-dependent Zn metallopeptidase) [Bacillus
           halodurans C-125]
          Length = 657

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 195 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 254

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 255 IFIDEI 260


>gi|47570189|ref|ZP_00240843.1| cell division protein FtsH [Bacillus cereus G9241]
 gi|47553133|gb|EAL11530.1| cell division protein FtsH [Bacillus cereus G9241]
          Length = 633

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 257

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 258 IFIDEI 263


>gi|319891464|ref|YP_004148339.1| Cell division protein FtsH [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317161160|gb|ADV04703.1| Cell division protein FtsH [Staphylococcus pseudintermedius
           HKU10-03]
          Length = 704

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 260

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 261 IFIDEI 266


>gi|313237893|emb|CBY13021.1| unnamed protein product [Oikopleura dioica]
          Length = 690

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 67/157 (42%), Gaps = 32/157 (20%)

Query: 43  FIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVN-FRSTSGP------------ 88
           FI  ++ R      +L F GPPG GKT++A+ +AR LG   +R + G             
Sbjct: 253 FICTSQLRGSVQGKILCFHGPPGTGKTSIAKSIARSLGRKYYRFSVGGMSDVAEIKGHRR 312

Query: 89  --VIAKAGDLAALLTNLEDRD-VLFIDEIHRL--------SIIVEEILYPAMEDFQLDLM 137
             V A  G L   L   E  + ++ IDEI +L        S  + E+L P      LD  
Sbjct: 313 TYVGAMPGKLVQCLKKTESENPLILIDEIDKLGRGYQGDPSSALLELLDPEQNVGFLDHY 372

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRF 174
           +        V I+LS+   I     +  ++ PL+DR 
Sbjct: 373 L-------DVPIDLSKALFICTANDLSTISGPLRDRM 402


>gi|325110829|ref|YP_004271897.1| ATPase associated with various cellular activities AAA_3
           [Planctomyces brasiliensis DSM 5305]
 gi|324971097|gb|ADY61875.1| ATPase associated with various cellular activities AAA_3
           [Planctomyces brasiliensis DSM 5305]
          Length = 324

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 67/157 (42%), Gaps = 24/157 (15%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKAGDLAALLTNLEDR-------- 106
           H+L    PGLGKTTLA+ +A  LG  F R    P +  +      L N + +        
Sbjct: 50  HLLLEDQPGLGKTTLAKALAAGLGEQFARVQCTPDLLPSDVTGFNLFNQKSQEFEFREGP 109

Query: 107 ---DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
              DVL  DEI+R +   +  L  AM + Q+ L     P + +       F +IA    V
Sbjct: 110 VFADVLLADEINRATPRTQSALLEAMAERQVTLDTKRYPLSET-------FFVIATQNPV 162

Query: 164 GLL-TNPLQ----DRFGIPIRLNFYEIEDLKTIVQRG 195
               T PL     DRF + + + +   ED   ++ RG
Sbjct: 163 EQHGTYPLPEAQLDRFAMKLSIGYAAAEDEVAMLDRG 199


>gi|297616334|ref|YP_003701493.1| ATP-dependent metalloprotease FtsH [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297144171|gb|ADI00928.1| ATP-dependent metalloprotease FtsH [Syntrophothermus lipocalidus
           DSM 12680]
          Length = 600

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 45/95 (47%), Gaps = 11/95 (11%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           EE    +E   N + FI+     A+    VL  GPPG GKT +A+ VA E GV F S SG
Sbjct: 167 EELQEVIEFLKNPQKFIQMG---AKIPKGVLLYGPPGTGKTLMARAVAGEAGVPFFSISG 223

Query: 88  P------VIAKAGDLAALLTNLEDRD--VLFIDEI 114
                  V   A  +  L  N +     ++FIDEI
Sbjct: 224 SDFVEMFVGVGAARVRDLFENAKKNAPCIVFIDEI 258


>gi|322418779|ref|YP_004198002.1| ATP-dependent metalloprotease FtsH [Geobacter sp. M18]
 gi|320125166|gb|ADW12726.1| ATP-dependent metalloprotease FtsH [Geobacter sp. M18]
          Length = 619

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108
           +L VGPPG GKT LA+ VA E GVNF + S        V   A  +  L  N +     +
Sbjct: 211 ILLVGPPGTGKTLLARAVAGEAGVNFFTISASQFIEMFVGVGASRVRDLFANAKKGAPSI 270

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 271 IFIDEI 276


>gi|253999169|ref|YP_003051232.1| ATP-dependent protease ATP-binding subunit ClpX [Methylovorus sp.
           SIP3-4]
 gi|253985848|gb|ACT50705.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylovorus
           sp. SIP3-4]
          Length = 423

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 51/113 (45%), Gaps = 26/113 (23%)

Query: 32  GQVEACSNLKVFI---------EAAKARAE---ALDHVLFVGPPGLGKTTLAQVVARELG 79
           GQ +A  NL V +          A K + E   A  ++L +GP G GKT LAQ +AR L 
Sbjct: 78  GQTQAKKNLAVAVYNHYKRLDQSATKDKDEVEIAKSNILVIGPTGSGKTLLAQTLARLLD 137

Query: 80  VNFRSTSGPVIAKAGDLAALLTNL--------------EDRDVLFIDEIHRLS 118
           V F       + +AG +   + N+                R +++IDEI ++S
Sbjct: 138 VPFVMADATTLTEAGYVGEDVENIMQKLLQKCDYDIEKAQRGIVYIDEIDKIS 190


>gi|255727949|ref|XP_002548900.1| ribosome biogenesis ATPase RIX7 [Candida tropicalis MYA-3404]
 gi|240133216|gb|EER32772.1| ribosome biogenesis ATPase RIX7 [Candida tropicalis MYA-3404]
          Length = 825

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL--EDRDV---- 108
           VL  GPPG GKTTLA  +A EL V F + S P I    +G+    L +L  E + V    
Sbjct: 230 VLLYGPPGCGKTTLANALAGELKVPFFNISAPSIVSGMSGESEKKLRDLFEEAKSVAPCL 289

Query: 109 LFIDEIHRLS 118
           +F+DEI  ++
Sbjct: 290 IFMDEIDAIT 299



 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 559 VLMWGPPGCGKTLLAKAVANESRANFISIKGP 590


>gi|229824776|ref|ZP_04450845.1| hypothetical protein GCWU000182_00125 [Abiotrophia defectiva ATCC
           49176]
 gi|229791105|gb|EEP27219.1| hypothetical protein GCWU000182_00125 [Abiotrophia defectiva ATCC
           49176]
          Length = 515

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 54/108 (50%), Gaps = 16/108 (14%)

Query: 27  LEEFTGQVEACSNLKVFIEAAKARA----EALDHVLFVGPPGLGKTTLAQVVA---RELG 79
           LEE   +V +  NL    +  K +     +   H++F G PG GKTT+A+++A   +ELG
Sbjct: 262 LEEVKNEVNSLINLINIRQLRKKKGLPSPDMSYHMVFTGSPGTGKTTVARLIASIYKELG 321

Query: 80  VNFR------STSGPVIAKAGDLAALLTNLEDR---DVLFIDEIHRLS 118
           V  +        SG V    G  A  +T + ++    VLFIDE + LS
Sbjct: 322 VLSKGGLIEVDRSGLVAGYVGQTALKVTEVVNKALGGVLFIDEAYSLS 369


>gi|269214372|ref|ZP_05986447.2| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           lactamica ATCC 23970]
 gi|269209943|gb|EEZ76398.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           lactamica ATCC 23970]
          Length = 442

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +AR+L V F       + +AG    D+  ++T L        
Sbjct: 142 NILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDV 201

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 202 EKAQRGIVYIDEIDKIS 218


>gi|256383978|gb|ACU78548.1| peptidase, M41 family [Mycoplasma mycoides subsp. capri str. GM12]
 gi|256384810|gb|ACU79379.1| peptidase, M41 family [Mycoplasma mycoides subsp. capri str. GM12]
 gi|296455408|gb|ADH21643.1| peptidase, M41 family [synthetic Mycoplasma mycoides JCVI-syn1.0]
          Length = 648

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 33/60 (55%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           EE +  VE    LK   + A A A A   VL  GPPG GKT LA+ VA E  V+F S +G
Sbjct: 177 EEKSELVELVDYLKQPAKYASAGARAPKGVLMEGPPGTGKTLLAKAVAGEANVSFFSIAG 236


>gi|171186425|ref|YP_001795344.1| AAA family ATPase, CDC48 subfamily protein [Thermoproteus
           neutrophilus V24Sta]
 gi|170935637|gb|ACB40898.1| AAA family ATPase, CDC48 subfamily [Thermoproteus neutrophilus
           V24Sta]
          Length = 731

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLAALLTNLEDR------DV 108
           +L  GPPG GKT LA+ VA E G NF +  GP I     G+   ++  +  +       V
Sbjct: 491 ILLFGPPGTGKTLLAKAVATESGANFIAVRGPEIFSKWVGESEKMVREIFRKARMAAPAV 550

Query: 109 LFIDEIHRLS 118
           +FIDEI  L+
Sbjct: 551 IFIDEIDALA 560



 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 16/115 (13%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
           T E+     +A   ++  +E      E   H        +L +GPPG GKT LA+ VA E
Sbjct: 177 TWEDIGDLEDAKQKIRELVELPLRHPELFKHLGIEPPKGILLIGPPGTGKTLLAKAVANE 236

Query: 78  LGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DVLFIDEIHRLSIIVEEI 124
               F + +GP I     G+  A L  + +        ++FIDEI  ++   EE+
Sbjct: 237 ANAYFVAINGPEIMSKYYGESEARLREIFEEAKKNAPAIIFIDEIDAIAPKREEV 291


>gi|156391074|ref|XP_001635594.1| predicted protein [Nematostella vectensis]
 gi|156222689|gb|EDO43531.1| predicted protein [Nematostella vectensis]
          Length = 285

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 19/28 (67%), Positives = 21/28 (75%)

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGP 88
           GPPG GKT LA VVA+E G+NF S  GP
Sbjct: 106 GPPGTGKTLLAGVVAKECGLNFISIKGP 133


>gi|170740232|ref|YP_001768887.1| ATPase central domain-containing protein [Methylobacterium sp.
           4-46]
 gi|168194506|gb|ACA16453.1| AAA ATPase central domain protein [Methylobacterium sp. 4-46]
          Length = 664

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 92/229 (40%), Gaps = 60/229 (26%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRST----SGPVIAK------AGDLAALLTNLED 105
           H++F GPPG+GKT     VAR LG  FR       G ++        AG +    T   D
Sbjct: 443 HMVFTGPPGVGKTQ----VARALGEIFRGVGVLRKGHLVETDRAGLVAGYVGQTATKTLD 498

Query: 106 R------DVLFIDEIHRLSIIVE---------EILYPAMEDF--QLDLMVGEGPSARSVK 148
           +       +LFIDE + L+   E         + L   MED   ++ ++V   PS     
Sbjct: 499 KCKEALDGILFIDEAYALADGQEGGSFGREAIDTLLKFMEDHRDRIIVIVAGYPS----- 553

Query: 149 INLSRFTLIAATTRVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEA 207
             + RF          + TNP L  RF   I    Y + +L+ I++R A     A+ D  
Sbjct: 554 -EMRRF----------IGTNPGLASRFTKTIDFPAYSVAELEEILRRMAAAQAYALPDPL 602

Query: 208 ACEIAMRSRGTPRIAGRLLRRVR--DFAEVAHAKTITREIADAALLRLA 254
                      PR++G L    R  D+      +T+     +A  +RLA
Sbjct: 603 G----------PRLSGWLAENARREDWGNARAMRTLLERAREAQAVRLA 641


>gi|197117001|ref|YP_002137428.1| ATP-dependent Lon protease [Geobacter bemidjiensis Bem]
 gi|197086361|gb|ACH37632.1| ATP-dependent Lon protease (La) [Geobacter bemidjiensis Bem]
          Length = 816

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 95/219 (43%), Gaps = 49/219 (22%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA----------GDLAA-LLTNLE 104
           + FVGPPG+GKT+L + +AR +G  F R + G V  +A          G L   ++  L+
Sbjct: 359 LCFVGPPGVGKTSLGKSIARAMGRKFVRISLGGVRDEAEIRGHRRTYVGALPGRIIQGLK 418

Query: 105 ----DRDVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152
               +  V  +DE+ +L        S  + E+L P   +   D  +       ++  NLS
Sbjct: 419 QAGSNNPVFMLDELDKLGSDFRGDPSSALLEVLDPEQNNSFSDHYI-------NLPFNLS 471

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED-----LKTIVQRGAKLTGL-----A 202
               IA   ++  +  PL+DR  + I L+ Y  E+      + +V R  K  G+     A
Sbjct: 472 NVMFIATANQMDTIPGPLRDRMEV-INLSGYTEEEKLGIAKRYLVPRQVKENGITDDIVA 530

Query: 203 VTDEAACEIAMRS------RGTPRIAGRLLRRV-RDFAE 234
            +DEA   +  +       R   R  G + R+V R  AE
Sbjct: 531 FSDEALRTVISKYTREAGLRNLEREVGSICRKVARKVAE 569


>gi|152973913|ref|YP_001373430.1| ATP-dependent metalloprotease FtsH [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152022665|gb|ABS20435.1| ATP-dependent metalloprotease FtsH [Bacillus cytotoxicus NVH
           391-98]
          Length = 639

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 257

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 258 IFIDEI 263


>gi|312213191|emb|CBX93273.1| similar to AAA ATPase central domain protein [Leptosphaeria
           maculans]
          Length = 541

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 69/148 (46%), Gaps = 18/148 (12%)

Query: 22  LRPRTLEEFTGQ--VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +RP  L++  GQ  V     L+  ++  K     L  ++  G PG GKTT+A+++A   G
Sbjct: 129 MRPSALDQVYGQELVAPGGVLRGMVDEGK-----LPSMVLWGRPGTGKTTIARLIANTSG 183

Query: 80  ---VNFRSTSGPVIAKAGDLAALLTNLE---DRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
              V   STS  +       A   ++L+    + ++F DE+HR S   ++     +E   
Sbjct: 184 ARYVEINSTSTKLEQVRKIFAEAASDLQLTGRKTIVFCDELHRFSKTQQDAFLGPVESGT 243

Query: 134 LDLMVG--EGPSARSVKINLSR---FTL 156
           + L+    E PS + +   LSR   FTL
Sbjct: 244 ITLIAATTENPSFKVISALLSRCRTFTL 271


>gi|302342890|ref|YP_003807419.1| ATP-dependent protease La [Desulfarculus baarsii DSM 2075]
 gi|301639503|gb|ADK84825.1| ATP-dependent protease La [Desulfarculus baarsii DSM 2075]
          Length = 798

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 75/178 (42%), Gaps = 45/178 (25%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA----------GDLAALLTNLED 105
           + FVGPPG+GKT+LA+ +AR +G  F R + G V  +A          G L   +     
Sbjct: 344 LCFVGPPGVGKTSLARSIARAMGRKFIRLSLGGVRDEAEIRGHRRTYIGALPGKIIQSMR 403

Query: 106 R-----DVLFIDEIHRLSI--------IVEEILYP----AMEDFQLDLMVGEGPSARSVK 148
           R      V  +DE+ ++S          + E+L P    A  D  LD           V 
Sbjct: 404 RVGSVNPVFCLDEVDKMSTDFRGDPSAALLEVLDPEQNYAFNDHYLD-----------VD 452

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY-EIEDLKTIVQ----RGAKLTGL 201
            NLS    I     +  +  PLQDR  I IRL  Y E+E +    Q    + AK  GL
Sbjct: 453 YNLSEVLFITTANTLYSIPAPLQDRMEI-IRLAGYTELEKVSIARQFLLPKQAKAHGL 509


>gi|294496941|ref|YP_003560641.1| cell division protease FtsH [Bacillus megaterium QM B1551]
 gi|294346878|gb|ADE67207.1| cell division protease FtsH [Bacillus megaterium QM B1551]
          Length = 636

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 200 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 259

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 260 IFIDEI 265


>gi|288924700|ref|ZP_06418637.1| cell division protein FtsH [Prevotella buccae D17]
 gi|288338487|gb|EFC76836.1| cell division protein FtsH [Prevotella buccae D17]
          Length = 690

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 81/183 (44%), Gaps = 29/183 (15%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VL 109
           L VGPPG GKT LA+ VA E GV F S SG       V   A  +  L    +++   ++
Sbjct: 230 LLVGPPGTGKTLLAKAVAGEAGVPFFSMSGSDFVEMFVGVGASRVRDLFRQAKEKAPCII 289

Query: 110 FIDEIH-------RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTR 162
           FIDEI        + S++          +  L  M G G +        S   ++AAT R
Sbjct: 290 FIDEIDAVGRARAKNSMMNGNSEQENTLNALLTEMDGFGTN--------SGVIILAATNR 341

Query: 163 VGLLTNPL--QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPR 220
           V +L   L    RF   I ++  ++ + K I Q    L  + V D  + +I + +R TP 
Sbjct: 342 VDMLDAALLRAGRFDRQIHVDLPDLNERKEIFQ--VHLKPVKVDD--SVDIDLLARQTPG 397

Query: 221 IAG 223
            +G
Sbjct: 398 FSG 400


>gi|283852374|ref|ZP_06369644.1| ATP-dependent protease La [Desulfovibrio sp. FW1012B]
 gi|283572222|gb|EFC20212.1| ATP-dependent protease La [Desulfovibrio sp. FW1012B]
          Length = 819

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 82/196 (41%), Gaps = 50/196 (25%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           +  VGPPG+GKT+LA+ +A+ +G  F R + G V  +A              G +   L 
Sbjct: 364 LCLVGPPGVGKTSLAKSIAKAMGREFVRLSLGGVRDEAEIRGHRRTYVGALPGKIIQSLK 423

Query: 102 NLE-DRDVLFIDEIHRLSI--------IVEEILYP----AMEDFQLDLMVGEGPSARSVK 148
            ++ +  V  +DE+ ++S          + E+L P    A  D  LDL            
Sbjct: 424 RVKFNNPVFCLDEVDKMSTDFRGDPSSALLEVLDPEQNYAYNDHYLDL-----------D 472

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY-EIEDL---------KTIVQRGAKL 198
            +LS+   I     +  +  PLQDR  I IR+  Y E E           K I Q G K 
Sbjct: 473 YDLSKIFFITTANSLHSIPLPLQDRMEI-IRIPGYLETEKSQIGRRFLLPKNIEQHGLKD 531

Query: 199 TGLAVTDEAACEIAMR 214
             L+  +EA  E+  R
Sbjct: 532 ENLSFDEEALLEVIRR 547


>gi|282897116|ref|ZP_06305118.1| Peptidase M41, FtsH [Raphidiopsis brookii D9]
 gi|281197768|gb|EFA72662.1| Peptidase M41, FtsH [Raphidiopsis brookii D9]
          Length = 628

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ +A E GV F S SG       V   A  +  L    +D    +
Sbjct: 209 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKDNAPCI 268

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 269 IFIDEI 274


>gi|228976824|ref|ZP_04137237.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           Bt407]
 gi|228782920|gb|EEM31085.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           Bt407]
          Length = 582

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 147 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 206

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 207 IFIDEI 212


>gi|229083384|ref|ZP_04215734.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           Rock3-44]
 gi|228699920|gb|EEL52555.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           Rock3-44]
          Length = 633

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 257

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 258 IFIDEI 263


>gi|256827871|ref|YP_003156599.1| ATP-dependent protease La [Desulfomicrobium baculatum DSM 4028]
 gi|256577047|gb|ACU88183.1| ATP-dependent protease La [Desulfomicrobium baculatum DSM 4028]
          Length = 804

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 104/239 (43%), Gaps = 54/239 (22%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA----------GDLAA-LLTNLE 104
           + FVGPPG+GKT+L + +AR LG  F R + G +  +A          G +   ++ +++
Sbjct: 380 LCFVGPPGVGKTSLGKSIARSLGRKFVRMSLGGMRDEAEIRGHRRTYIGAMPGRIIQSMK 439

Query: 105 D----RDVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152
           D      V+ +DEI +L        S  + E+L P   +   D  +       +V  +LS
Sbjct: 440 DAGTINPVIMLDEIDKLGNDFRGDPSSALLEVLDPEQNNSFTDHYL-------NVPYDLS 492

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT-----------GL 201
           +   I     +  + + L DR  + IR+  Y  E  KTI+ R   LT            L
Sbjct: 493 KVMFICTANMLDTIPSALLDRMEV-IRIPGY-TEQEKTIIARRYLLTRQIKENGLTNDTL 550

Query: 202 AVTDEAACEIAMRSRGTPRIAG-RLLRR-----VRDFA-EVAHAKTITREIADAALLRL 253
            ++D    EI    RG  R AG R L R      R +A  VA  K     +  +AL++L
Sbjct: 551 IISDAVLAEII---RGYTREAGLRNLEREIGSICRKYARRVAEGKKGPFRVTTSALIKL 606


>gi|226356612|ref|YP_002786352.1| MoxR-like ATPase [Deinococcus deserti VCD115]
 gi|226318602|gb|ACO46598.1| putative MoxR-like ATPase [Deinococcus deserti VCD115]
          Length = 315

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 71/161 (44%), Gaps = 28/161 (17%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED---------- 105
           H+L    PG+GKTTLAQ +AR  G++FR           DL  L  ++ D          
Sbjct: 47  HLLIEDQPGVGKTTLAQALARTCGLHFRRVQFTSDLLPADL--LGVSIWDAGAATFRFQP 104

Query: 106 ----RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATT 161
                +VL  DEI+R +   +  L  AME+ Q    V EG   R +      F +IA   
Sbjct: 105 GPVFSEVLLADEINRATPRTQGALLEAMEERQ----VSEGGVTRPLP---DPFFVIATQN 157

Query: 162 RVGLL-TNPLQ----DRFGIPIRLNFYEIEDLKTIVQRGAK 197
               + T+PL     DRF + + L + +    + +++ G +
Sbjct: 158 PAAFVGTSPLPEAQLDRFLLTVTLGYPDPRAERNLLETGGR 198


>gi|253699261|ref|YP_003020450.1| ATP-dependent protease La [Geobacter sp. M21]
 gi|251774111|gb|ACT16692.1| ATP-dependent protease La [Geobacter sp. M21]
          Length = 817

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 74/162 (45%), Gaps = 32/162 (19%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA----------GDLAA-LLTNLE 104
           + FVGPPG+GKT+L + +AR +G  F R + G V  +A          G L   ++  L+
Sbjct: 359 LCFVGPPGVGKTSLGKSIARAMGRKFVRISLGGVRDEAEIRGHRRTYVGALPGRIIQGLK 418

Query: 105 ----DRDVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152
               +  V  +DE+ +L        S  + E+L P   +   D  +       ++  NLS
Sbjct: 419 QAGSNNPVFMLDELDKLGSDFRGDPSSALLEVLDPEQNNSFSDHYI-------NLPFNLS 471

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
               IA   ++  +  PL+DR  + I L+ Y  E+   I +R
Sbjct: 472 NVMFIATANQMDTIPGPLRDRMEV-INLSGYTEEEKLGIAKR 512


>gi|119597250|gb|EAW76844.1| peroxisome biogenesis factor 1, isoform CRA_e [Homo sapiens]
          Length = 1284

 Score = 42.4 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/32 (59%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT LA V+ARE  +NF S  GP
Sbjct: 877 ILLYGPPGTGKTLLAGVIARESRMNFISVKGP 908


>gi|45357587|ref|NP_987144.1| ATPase [Methanococcus maripaludis S2]
 gi|45047147|emb|CAF29580.1| putative AAA superfamily ATPase, similar to FtsH [Methanococcus
           maripaludis S2]
          Length = 371

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 4/63 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKV---FIEAAKARAE-ALDHVLFVGPPGLGKTTLAQVVARE 77
            +  T EE  GQ++A    K+   ++E  +   E A  ++LF GPPG GKT LA+ +A E
Sbjct: 120 FKETTFEEVVGQIDAKKKCKIVIKYLENPELFGEWAPKNILFYGPPGTGKTMLARALATE 179

Query: 78  LGV 80
             V
Sbjct: 180 TDV 182


>gi|1813473|gb|AAB41679.1| cell division protein [Bacillus firmus]
          Length = 679

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 202 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 261

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 262 IFIDEI 267


>gi|332206820|ref|XP_003252493.1| PREDICTED: LOW QUALITY PROTEIN: peroxisome biogenesis factor 1-like
           [Nomascus leucogenys]
          Length = 1283

 Score = 42.4 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/32 (59%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT LA V+ARE  +NF S  GP
Sbjct: 877 ILLYGPPGTGKTLLAGVIARESRMNFISVKGP 908


>gi|331703056|ref|YP_004399743.1| ATP dependent zinc metallopeptidase FtsH [Mycoplasma mycoides
           subsp. capri LC str. 95010]
 gi|328801611|emb|CBW53764.1| ATP dependent zinc metallopeptidase FtsH [Mycoplasma mycoides
           subsp. capri LC str. 95010]
          Length = 648

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 33/60 (55%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           EE +  VE    LK   + A A A A   VL  GPPG GKT LA+ VA E  V+F S +G
Sbjct: 177 EEKSELVELVDYLKQPAKYASAGARAPKGVLMEGPPGTGKTLLAKAVAGEANVSFFSIAG 236


>gi|323331879|gb|EGA73291.1| Mgs1p [Saccharomyces cerevisiae AWRI796]
          Length = 360

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 19/106 (17%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVN----------FRSTSGPVIAKAGDLAALLTNLED- 105
           ++  GPPG+GKT+LA+++ +    +          F   +    A   +L  +    +  
Sbjct: 1   MILWGPPGVGKTSLARLLTKTATTSSNESNVGSRYFMIETSATKANTQELRGIFEKSKKE 60

Query: 106 ------RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPS 143
                 R VLFIDEIHR + + +++L P +E+  + L+    E PS
Sbjct: 61  YQLTKRRTVLFIDEIHRFNKVQQDLLLPHVENGDIILIGATTENPS 106


>gi|319942796|ref|ZP_08017098.1| hypothetical protein HMPREF9464_02317 [Sutterella wadsworthensis
           3_1_45B]
 gi|319803606|gb|EFW00562.1| hypothetical protein HMPREF9464_02317 [Sutterella wadsworthensis
           3_1_45B]
          Length = 807

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 3/100 (3%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG---VNF 82
           TL++F+ Q E  S L  +++ A A      +VL  GPPG GKT LA+++A+E G      
Sbjct: 330 TLKDFSHQPEIESYLLPYLKKALAEHRQGVNVLLYGPPGTGKTELARLLAKETGSALYEV 389

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
              SGP      D    LT     + LF +    + ++ E
Sbjct: 390 SPKSGPDNGYRSDKNNRLTRWHCGERLFANTSQTMLLLDE 429


>gi|229009575|ref|ZP_04166802.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus mycoides DSM
           2048]
 gi|229053912|ref|ZP_04195347.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus AH603]
 gi|229131073|ref|ZP_04259986.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           BDRD-ST196]
 gi|229165054|ref|ZP_04292850.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus AH621]
 gi|228618439|gb|EEK75468.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus AH621]
 gi|228652410|gb|EEL08334.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           BDRD-ST196]
 gi|228721453|gb|EEL72973.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus AH603]
 gi|228751719|gb|EEM01518.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus mycoides DSM
           2048]
          Length = 612

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 177 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 236

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 237 IFIDEI 242


>gi|241958554|ref|XP_002421996.1| ATP-dependent protease, mitochondrial precursor, putative [Candida
           dubliniensis CD36]
 gi|300681031|sp|B9WLN5|LONM_CANDC RecName: Full=Lon protease homolog, mitochondrial; Flags: Precursor
 gi|223645341|emb|CAX39997.1| ATP-dependent protease, mitochondrial precursor, putative [Candida
           dubliniensis CD36]
          Length = 1073

 Score = 42.4 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 63/254 (24%), Positives = 98/254 (38%), Gaps = 53/254 (20%)

Query: 43  FIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNF-RSTSGP------------ 88
           FI   K        +L   GPPG GKT++A+ +A  L   + R   G             
Sbjct: 524 FISVGKISGNVDGRILCLAGPPGTGKTSIAKSIAEALNRKYTRIAVGGVQDVHDVKGHRR 583

Query: 89  --VIAKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVE--------EILYPAMEDFQLDLM 137
             V +  G +   LT  +  + ++ IDEI +L             EIL P   +  +D  
Sbjct: 584 TYVASIPGRIVTALTQAKTSNPLMLIDEIDKLDTTSHGGAARAFLEILDPEQNNSFVDNF 643

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR--- 194
           +        VK++LS+   +     +G +  PL+DR  I I +N Y   D   I +R   
Sbjct: 644 I-------EVKVDLSKVLFVCTANYLGSIPAPLRDRMEI-IEVNGYTKNDKIEITKRHLI 695

Query: 195 --GAKLTGL-----AVTDEAACEIA---MRSRG-------TPRIAGRLLRRVRDFAEVAH 237
              AK  GL      + DE    +     R  G         RI  +  R++ +  E   
Sbjct: 696 PAAAKKVGLEEGRVVIPDETILRLIDKYCRESGLRHIKSLINRIFSKASRKIVEELEDTD 755

Query: 238 AKTITREIADAALL 251
           A   +REI + +L+
Sbjct: 756 ADPHSREIVEESLV 769


>gi|126460414|ref|YP_001056692.1| AAA family ATPase, CDC48 subfamily protein [Pyrobaculum
           calidifontis JCM 11548]
 gi|126250135|gb|ABO09226.1| AAA family ATPase, CDC48 subfamily [Pyrobaculum calidifontis JCM
           11548]
          Length = 736

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 17/118 (14%)

Query: 24  PRTLEEFTGQVE-ACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVV 74
           P+   E  G +E A   ++  +E      E   H        +L +GPPG GKT LA+ V
Sbjct: 172 PKVTWEDIGDLEDAKQKIRELVELPLRHPELFKHLGIEPPKGILLIGPPGTGKTLLAKAV 231

Query: 75  ARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DVLFIDEIHRLSIIVEEI 124
           A E    F + +GP I     G+  A L  + +        ++FIDEI  ++   EE+
Sbjct: 232 ANEANAYFVAINGPEIMSKYYGESEARLREIFEEAKKNAPAIIFIDEIDAIAPKREEV 289



 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 17/32 (53%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG+GKT  A+ VA E G NF +  GP
Sbjct: 502 ILLFGPPGVGKTLFAKAVATESGANFIAVRGP 533


>gi|114614480|ref|XP_519198.2| PREDICTED: peroxisome biogenesis factor 1 isoform 2 [Pan
           troglodytes]
          Length = 1283

 Score = 42.4 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/32 (59%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT LA V+ARE  +NF S  GP
Sbjct: 877 ILLYGPPGTGKTLLAGVIARESRMNFISVKGP 908


>gi|63102390|gb|AAH95222.1| Rfc5 protein [Danio rerio]
 gi|182889646|gb|AAI65456.1| Replication factor C (activator 1) 5 [Danio rerio]
          Length = 334

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+TL++     +  S ++ FI   +     L H+LF GPPG GKT+     AR+L
Sbjct: 21 RPQTLDDLISHQDILSTIQKFISEDR-----LPHLLFYGPPGTGKTSTILACARQL 71


>gi|30018336|ref|NP_829967.1| cell division protein ftsH [Bacillus cereus ATCC 14579]
 gi|218234053|ref|YP_002364915.1| cell division protein FtsH [Bacillus cereus B4264]
 gi|296500898|ref|YP_003662598.1| cell division protein FtsH [Bacillus thuringiensis BMB171]
 gi|29893876|gb|AAP07168.1| Cell division protein ftsH [Bacillus cereus ATCC 14579]
 gi|218162010|gb|ACK62002.1| cell division protein FtsH [Bacillus cereus B4264]
 gi|296321950|gb|ADH04878.1| cell division protein ftsH [Bacillus thuringiensis BMB171]
          Length = 633

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 257

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 258 IFIDEI 263


>gi|14289175|dbj|BAB59063.1| Pex1pG843D [Homo sapiens]
          Length = 1283

 Score = 42.4 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/32 (59%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT LA V+ARE  +NF S  GP
Sbjct: 877 ILLYGPPGTGKTLLAGVIARESRMNFISVKGP 908


>gi|305667604|ref|YP_003863891.1| DNA polymerase III subunit gamma/tau [Maribacter sp. HTCC2170]
 gi|88709654|gb|EAR01887.1| DNA polymerase III subunit gamma/tau [Maribacter sp. HTCC2170]
          Length = 614

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 98/248 (39%), Gaps = 61/248 (24%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV-- 80
           RP+T ++  GQ    + L   IE     A+AL   LF GP G+GKTT A+++A+++    
Sbjct: 19  RPQTFKDVVGQQAITNTLLNAIEHNHL-AQAL---LFCGPRGVGKTTCARILAKQINQDG 74

Query: 81  ------NFRSTSGPVIAKAGDLAALLTNLEDR----------DVLFIDEIHRLSIIVEEI 124
                 +F      + A + +    + NL D+           V  IDE+H LS      
Sbjct: 75  TEREDEDFAFNIFELDAASNNSVDDIRNLIDQVRIPPQVGKYKVYIIDEVHMLS------ 128

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
                  F   L   E P   ++         I ATT    +         IP  L+  +
Sbjct: 129 ----QSAFNAFLKTLEEPPKHAI--------FILATTEKHKI---------IPTILSRCQ 167

Query: 185 IEDLKTIVQRG--------AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
           I D K I  +         AK  G+   D+A   IA ++ G  R A  +  RV  F+   
Sbjct: 168 IFDFKRITVKDAAEYLKYIAKNQGIVADDDALHIIAQKADGAMRDALSIFDRVVSFS--- 224

Query: 237 HAKTITRE 244
             K +TR+
Sbjct: 225 -GKNLTRK 231


>gi|311029001|ref|ZP_07707091.1| cell division protease FtsH [Bacillus sp. m3-13]
          Length = 644

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 200 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 259

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 260 IFIDEI 265


>gi|307719319|ref|YP_003874851.1| hypothetical protein STHERM_c16380 [Spirochaeta thermophila DSM
           6192]
 gi|306533044|gb|ADN02578.1| hypothetical protein STHERM_c16380 [Spirochaeta thermophila DSM
           6192]
          Length = 790

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 74/166 (44%), Gaps = 41/166 (24%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVN-FRSTSG--------------PVIAKAGDLAALLT 101
           +  VGPPG+GKT++ + +AR LG   FR + G               + A  G +   L 
Sbjct: 358 ICLVGPPGVGKTSIGKSIARALGRKFFRFSVGGMRDEAEIKGHRRTYIGAMPGKIIQGLK 417

Query: 102 NLEDRDVLF-IDEIHRLSIIVE--------EILYP----AMEDFQLDLMVGEGPSARSVK 148
            ++ ++ +F IDEI +L +  +        E+L P    A  D  LD           V 
Sbjct: 418 IVKTKNPVFMIDEIDKLGVSFQGDPASALLEVLDPEQNVAFRDHYLD-----------VP 466

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
            ++S+   IA    +  +  PL DR  + IRL+ Y IE+ K  + R
Sbjct: 467 FDISKVLFIATANTLDTIPRPLLDRMEV-IRLSGY-IEEEKIAIAR 510


>gi|261392354|emb|CAX49892.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Neisseria
           meningitidis 8013]
          Length = 414

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +AR+L V F       + +AG    D+  ++T L        
Sbjct: 114 NILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDV 173

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 174 EKAQRGIVYIDEIDKIS 190


>gi|255724454|ref|XP_002547156.1| peroxisomal biogenesis factor 6 [Candida tropicalis MYA-3404]
 gi|240135047|gb|EER34601.1| peroxisomal biogenesis factor 6 [Candida tropicalis MYA-3404]
          Length = 1150

 Score = 42.4 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 17/32 (53%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +LF GPPG GKT LA+ +A    +NF S  GP
Sbjct: 869 ILFYGPPGTGKTLLAKAIATNFSLNFFSVKGP 900


>gi|229067830|ref|ZP_04201148.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus F65185]
 gi|228715314|gb|EEL67172.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus F65185]
          Length = 612

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 177 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 236

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 237 IFIDEI 242


>gi|229170916|ref|ZP_04298519.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus MM3]
 gi|228612582|gb|EEK69801.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus MM3]
          Length = 612

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 177 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 236

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 237 IFIDEI 242


>gi|222152145|ref|YP_002561305.1| cell-division protein [Macrococcus caseolyticus JCSC5402]
 gi|222121274|dbj|BAH18609.1| cell-division protein [Macrococcus caseolyticus JCSC5402]
          Length = 690

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 205 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 264

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 265 IFIDEI 270


>gi|218895201|ref|YP_002443612.1| cell division protein FtsH [Bacillus cereus G9842]
 gi|228898819|ref|ZP_04063102.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           IBL 4222]
 gi|218542807|gb|ACK95201.1| cell division protein FtsH [Bacillus cereus G9842]
 gi|228860844|gb|EEN05221.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           IBL 4222]
          Length = 633

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 257

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 258 IFIDEI 263


>gi|163841991|ref|YP_001626396.1| ATP-dependent protease ATP-binding subunit ClpX [Renibacterium
           salmoninarum ATCC 33209]
 gi|189044144|sp|A9WUW1|CLPX_RENSM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|162955467|gb|ABY24982.1| ATP-dependent endopeptidase clp ATP-binding subunit [Renibacterium
           salmoninarum ATCC 33209]
          Length = 427

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------ED 105
           A  ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+        D
Sbjct: 117 AKSNILLIGPTGCGKTYLAQTLARRLNVPFAVADATALTEAGYVGEDVENILLKLIQAAD 176

Query: 106 RDV-------LFIDEIHRLS 118
            DV       ++IDEI ++S
Sbjct: 177 YDVKKAEQGIIYIDEIDKIS 196


>gi|158259371|dbj|BAF85644.1| unnamed protein product [Homo sapiens]
          Length = 1283

 Score = 42.4 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/32 (59%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT LA V+ARE  +NF S  GP
Sbjct: 877 ILLYGPPGTGKTLLAGVIARESRMNFISVKGP 908


>gi|18977335|ref|NP_578692.1| cell division protein CDC48 [Pyrococcus furiosus DSM 3638]
 gi|18893012|gb|AAL81087.1| cell division control protein 48, aaa family [Pyrococcus furiosus
           DSM 3638]
          Length = 837

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 52/116 (44%), Gaps = 16/116 (13%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
           T E+  G  EA   ++  +E      E  +         VL  GPPG GKT LA+ VA E
Sbjct: 207 TYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANE 266

Query: 78  LGVNFRSTSGPVIAKA--GD----LAALLTNLEDR--DVLFIDEIHRLSIIVEEIL 125
               F + +GP I     G+    L  +    E+    ++FIDEI  ++   EE++
Sbjct: 267 ANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKREEVV 322



 Score = 37.7 bits (86), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT LA+ VA E   NF +  GP +
Sbjct: 581 ILLYGPPGTGKTLLAKAVATESQANFIAIRGPEV 614


>gi|21226355|ref|NP_632277.1| replication factor C large subunit [Methanosarcina mazei Go1]
 gi|42559489|sp|Q8Q084|RFCL_METMA RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|20904606|gb|AAM29949.1| replication factor C subunit [Methanosarcina mazei Go1]
          Length = 610

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 7/103 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR----- 76
            RPRTL +  G  +A  +L+ + E  ++       V+  GP G+GKT+ A  +A      
Sbjct: 16  YRPRTLGDVVGNRKAVQDLRKWAEEWQSGIPEKRAVILYGPAGIGKTSSAHALAGDMEWE 75

Query: 77  --ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
             EL  + + T+G +   AG  A++ T    + ++ +DE   L
Sbjct: 76  VIELNASDQRTAGVIEKIAGSAASMNTFFGGKRLIILDEADNL 118


>gi|14289173|dbj|BAB59062.1| Pex1pL664P [Homo sapiens]
          Length = 1283

 Score = 42.4 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/32 (59%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT LA V+ARE  +NF S  GP
Sbjct: 877 ILLYGPPGTGKTLLAGVIARESRMNFISVKGP 908


>gi|17231134|ref|NP_487682.1| cell division protein [Nostoc sp. PCC 7120]
 gi|17132775|dbj|BAB75341.1| cell division protein [Nostoc sp. PCC 7120]
          Length = 628

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ +A E GV F S SG       V   A  +  L    +D    +
Sbjct: 209 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKDNAPCI 268

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 269 IFIDEI 274


>gi|4505725|ref|NP_000457.1| peroxisome biogenesis factor 1 [Homo sapiens]
 gi|8134613|sp|O43933|PEX1_HUMAN RecName: Full=Peroxisome biogenesis factor 1; AltName:
           Full=Peroxin-1; AltName: Full=Peroxisome biogenesis
           disorder protein 1
 gi|2655141|gb|AAB87880.1| peroxisome biogenesis disorder protein 1 [Homo sapiens]
 gi|2827156|gb|AAB99758.1| peroxisome biogenesis gene 1 [Homo sapiens]
 gi|6015438|dbj|BAA85162.1| PEX1 [Homo sapiens]
 gi|23242696|gb|AAH35575.1| Peroxisomal biogenesis factor 1 [Homo sapiens]
 gi|51094904|gb|EAL24149.1| peroxisome biogenesis factor 1 [Homo sapiens]
 gi|119597246|gb|EAW76840.1| peroxisome biogenesis factor 1, isoform CRA_a [Homo sapiens]
 gi|123980036|gb|ABM81847.1| peroxisome biogenesis factor 1 [synthetic construct]
          Length = 1283

 Score = 42.4 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/32 (59%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT LA V+ARE  +NF S  GP
Sbjct: 877 ILLYGPPGTGKTLLAGVIARESRMNFISVKGP 908


>gi|323484459|ref|ZP_08089825.1| hypothetical protein HMPREF9474_01576 [Clostridium symbiosum
           WAL-14163]
 gi|323692475|ref|ZP_08106709.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Clostridium
           symbiosum WAL-14673]
 gi|323402237|gb|EGA94569.1| hypothetical protein HMPREF9474_01576 [Clostridium symbiosum
           WAL-14163]
 gi|323503472|gb|EGB19300.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Clostridium
           symbiosum WAL-14673]
          Length = 433

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 28/128 (21%)

Query: 19  ISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEAL---------DHVLFVGPPG 64
           I+LL+P+ ++EF      GQ EA   L V +     R  +           ++L +GP G
Sbjct: 62  INLLKPKEIKEFLDEYVVGQDEAKKVLSVAVYNHYKRITSKGTQEVELQKSNILMLGPTG 121

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------------EDRDVLF 110
            GKT LAQ +A+ L V F       + +AG +   + N+               +  +++
Sbjct: 122 SGKTYLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKIIQSANYDISKAEYGIVY 181

Query: 111 IDEIHRLS 118
           IDEI +++
Sbjct: 182 IDEIDKIT 189


>gi|323303345|gb|EGA57141.1| Mgs1p [Saccharomyces cerevisiae FostersB]
 gi|323335886|gb|EGA77164.1| Mgs1p [Saccharomyces cerevisiae Vin13]
          Length = 415

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 28/111 (25%), Positives = 54/111 (48%), Gaps = 18/111 (16%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVN----------FRSTSGPVIAKAGDLAALLTNLED- 105
           ++  GPPG+GKT+LA+++ +    +          F   +    A   +L  +    +  
Sbjct: 1   MILWGPPGVGKTSLARLLTKTATTSSNESNVGSRYFMIETSATKANTQELRGIFEKSKKE 60

Query: 106 ------RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN 150
                 R VLFIDEIHR + + +++L P +E+  + +++G      S ++N
Sbjct: 61  YQLTKRRTVLFIDEIHRFNKVQQDLLLPHVENGDI-ILIGATTENPSFQLN 110


>gi|309378864|emb|CBX22569.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 414

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +AR+L V F       + +AG    D+  ++T L        
Sbjct: 114 NILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDV 173

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 174 EKAQRGIVYIDEIDKIS 190


>gi|251794099|ref|YP_003008830.1| ATP-dependent metalloprotease FtsH [Paenibacillus sp. JDR-2]
 gi|247541725|gb|ACS98743.1| ATP-dependent metalloprotease FtsH [Paenibacillus sp. JDR-2]
          Length = 670

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 203 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 262

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 263 IFIDEI 268


>gi|219852692|ref|YP_002467124.1| replication factor C small subunit [Methanosphaerula palustris
           E1-9c]
 gi|219546951|gb|ACL17401.1| Replication factor C [Methanosphaerula palustris E1-9c]
          Length = 326

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 58/135 (42%), Gaps = 23/135 (17%)

Query: 16  DAD-----ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           DAD     I   RP  L +  GQ E    L  ++     +  +L H+LF G  G+GKTT 
Sbjct: 2   DADDHTIWIERYRPTRLADIVGQDEITERLISYV-----KGRSLPHLLFTGSAGIGKTTA 56

Query: 71  AQVVAREL-----GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRL 117
           A  +ARE       +NFR  +        V+       A  + LE  +  +LF+DE   L
Sbjct: 57  AVALAREFFGEAWHINFREMNASDERGIDVVRNQIKQFARTSPLEGAEFKILFLDEADAL 116

Query: 118 SIIVEEILYPAMEDF 132
           +   +  L   ME +
Sbjct: 117 TTDAQAALRRTMETY 131


>gi|164658640|ref|XP_001730445.1| hypothetical protein MGL_2241 [Malassezia globosa CBS 7966]
 gi|159104341|gb|EDP43231.1| hypothetical protein MGL_2241 [Malassezia globosa CBS 7966]
          Length = 353

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP++++E   Q  A + L+  + +A      L H+LF GPPG GKT+    +AR+L
Sbjct: 14 RPKSIDEVASQQHAVNVLRKALTSAN-----LPHMLFYGPPGTGKTSTILALARQL 64


>gi|150025047|ref|YP_001295873.1| DNA polymerase III subunit [Flavobacterium psychrophilum JIP02/86]
 gi|149771588|emb|CAL43059.1| Probable DNA polymerase III subunit [Flavobacterium psychrophilum
           JIP02/86]
          Length = 361

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 96/248 (38%), Gaps = 61/248 (24%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV-- 80
           RP+T ++  GQ    + L   IE     A AL   LF GP G+GKTT A+++AR++    
Sbjct: 12  RPQTFKDVVGQQAITNTLLNAIETNHL-ASAL---LFTGPRGVGKTTCARILARKINQPG 67

Query: 81  ------NFRSTSGPVIAKAGDLAALLTNLEDR----------DVLFIDEIHRLSIIVEEI 124
                 +F      + A + +    + NL D+           V  IDE+H LS      
Sbjct: 68  YDDPNEDFAFNVFELDAASNNSVDDIRNLIDQVRIPPQTGQYKVYIIDEVHMLSSAA--- 124

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
                  F   L   E P   ++         I ATT    +         IP  L+  +
Sbjct: 125 -------FNAFLKTLEEPPKHAI--------FILATTEKHKI---------IPTILSRCQ 160

Query: 185 IEDLKTIVQRGAK--------LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
           I D K I  + AK          G+   D+A   IA ++ G  R A  +  RV  F    
Sbjct: 161 IFDFKRITVKDAKEHLAEVATNQGVIFEDDALHIIAQKADGAMRDALSIFDRVVSFC--- 217

Query: 237 HAKTITRE 244
             K +TR+
Sbjct: 218 -GKNLTRQ 224


>gi|75909397|ref|YP_323693.1| FtsH peptidase [Anabaena variabilis ATCC 29413]
 gi|75703122|gb|ABA22798.1| membrane protease FtsH catalytic subunit [Anabaena variabilis ATCC
           29413]
          Length = 628

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ +A E GV F S SG       V   A  +  L    +D    +
Sbjct: 209 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKDNAPCI 268

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 269 IFIDEI 274


>gi|322707676|gb|EFY99254.1| ATPase, AAA family protein [Metarhizium anisopliae ARSEF 23]
          Length = 1012

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 33/75 (44%), Gaps = 10/75 (13%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH----------VLFVGPPGLGKTTLAQVVA 75
           T E+     +  S LK+    A  R +A  +           L  GPPG GKT LA+ VA
Sbjct: 697 TFEDVHAPKDTISALKLLTSLALVRPDAFAYGVLSQDRIPGCLLYGPPGTGKTMLAKAVA 756

Query: 76  RELGVNFRSTSGPVI 90
           +E G N    SG  I
Sbjct: 757 KESGANMLEISGATI 771


>gi|312113350|ref|YP_004010946.1| ATP-dependent metalloprotease FtsH [Rhodomicrobium vannielii ATCC
           17100]
 gi|311218479|gb|ADP69847.1| ATP-dependent metalloprotease FtsH [Rhodomicrobium vannielii ATCC
           17100]
          Length = 626

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           +L VGPPG+GKT LA+ VA E GV F S SG    +   G  AA + +L ++       +
Sbjct: 192 ILLVGPPGIGKTLLARAVAGEAGVPFFSISGSEFVEMFVGVGAARVRDLFEQARKMKPCI 251

Query: 109 LFIDEIHRLS 118
           +FIDE+  L 
Sbjct: 252 IFIDELDSLG 261


>gi|254566263|ref|XP_002490242.1| AAA-peroxin that heterodimerizes with AAA-peroxin Pex1p [Pichia
           pastoris GS115]
 gi|238030038|emb|CAY67961.1| AAA-peroxin that heterodimerizes with AAA-peroxin Pex1p [Pichia
           pastoris GS115]
 gi|328350635|emb|CCA37035.1| peroxin-6 [Pichia pastoris CBS 7435]
          Length = 1166

 Score = 42.4 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 17/32 (53%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +LF GPPG GKT LA+ +A    +NF S  GP
Sbjct: 856 ILFYGPPGTGKTLLAKAIATNFALNFFSVKGP 887


>gi|228905862|ref|ZP_04069760.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           IBL 200]
 gi|228937368|ref|ZP_04100015.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228822326|gb|EEM68307.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228853802|gb|EEM98561.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           IBL 200]
          Length = 585

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 150 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 209

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 210 IFIDEI 215


>gi|170688931|ref|ZP_02880133.1| cell division protein FtsH [Bacillus anthracis str. A0465]
 gi|254682308|ref|ZP_05146169.1| cell division protein FtsH [Bacillus anthracis str. CNEVA-9066]
 gi|170667155|gb|EDT17916.1| cell division protein FtsH [Bacillus anthracis str. A0465]
          Length = 633

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 257

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 258 IFIDEI 263


>gi|70732247|ref|YP_262003.1| ATP-dependent protease La [Pseudomonas fluorescens Pf-5]
 gi|68346546|gb|AAY94152.1| ATP-dependent protease La [Pseudomonas fluorescens Pf-5]
          Length = 806

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 77/189 (40%), Gaps = 50/189 (26%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAKAGDLAALLT 101
           VL VGPPG+GKT++ + +A  LG  F   S                 + A+ G L   L 
Sbjct: 388 VLLVGPPGVGKTSVGKSIAESLGRPFYRFSVGGMRDEAEIKGHRRTYIGAQPGKLVQALK 447

Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAME----DFQLDLMVGEGPSARSVK 148
            +E  + V+ +DEI ++    +        E L P       D  LDL           +
Sbjct: 448 EVEVMNPVIMLDEIDKMGQSYQGDPASALLETLDPEQNVDFLDHYLDL-----------R 496

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR----------GAKL 198
           ++LS+   +     +  +  PL DR  + IRL+ Y  E+   I +R          G   
Sbjct: 497 MDLSKVLFVCTANTLDSIPGPLLDRMEV-IRLSGYITEEKLAIAKRHLWPKQLEKAGVAK 555

Query: 199 TGLAVTDEA 207
           T L+++D A
Sbjct: 556 TSLSISDSA 564


>gi|464347|sp|P33289|PEX6_PICPA RecName: Full=Peroxisomal biogenesis factor 6; AltName:
           Full=Peroxin-6; AltName: Full=Peroxisome biosynthesis
           protein PAS5
 gi|396147|emb|CAA80278.1| PAS5 [Pichia pastoris]
          Length = 1165

 Score = 42.4 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 17/32 (53%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +LF GPPG GKT LA+ +A    +NF S  GP
Sbjct: 855 ILFYGPPGTGKTLLAKAIATNFALNFFSVKGP 886


>gi|322705901|gb|EFY97484.1| nonsense-mediated mRNA decay protein, putative [Metarhizium
            anisopliae ARSEF 23]
          Length = 2207

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 78/172 (45%), Gaps = 25/172 (14%)

Query: 38   SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-------GVNFRSTSGPVI 90
            SN+   I    + +E       +G PG GKTT+A++ A  L       G  F+ TSG  +
Sbjct: 1234 SNIDTKIRQELSLSEERLSCSLLGNPGTGKTTVARLWAEFLACTGALPGDGFKETSGSKL 1293

Query: 91   AKAG--DLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARS 146
            A  G      LL +L+D    VLFIDE ++LS        P  +   LD ++ E  + R 
Sbjct: 1294 ANMGVSGCEKLLEDLKDIGGGVLFIDEAYQLSSGNS----PGGKAV-LDYLLAEVENLRG 1348

Query: 147  VKINLSRFTLIAATTR---VGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQR 194
             K++     +IA   +        NP    RF I +R N Y  ++L  I+QR
Sbjct: 1349 -KVSF----VIAGYDKQMETFFAHNPGFPSRFPIQMRFNDYSDDELLQILQR 1395


>gi|315644387|ref|ZP_07897527.1| ATP-dependent metalloprotease FtsH [Paenibacillus vortex V453]
 gi|315280264|gb|EFU43556.1| ATP-dependent metalloprotease FtsH [Paenibacillus vortex V453]
          Length = 689

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 203 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 262

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 263 IFIDEI 268


>gi|304437033|ref|ZP_07396996.1| ATP-dependent Clp protease ATP-binding subunit [Selenomonas sp.
           oral taxon 149 str. 67H29BP]
 gi|304369984|gb|EFM23646.1| ATP-dependent Clp protease ATP-binding subunit [Selenomonas sp.
           oral taxon 149 str. 67H29BP]
          Length = 421

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 58/120 (48%), Gaps = 26/120 (21%)

Query: 25  RTLEEFT-GQVEACSNLKVF-------IEAAKARAEALD----HVLFVGPPGLGKTTLAQ 72
           R L+++  GQ EA  +L V        I A + + E ++    +VL +GP G GKT LAQ
Sbjct: 69  RILDQYVIGQDEAKKSLSVAVYNHYKRIHAGQGKNEDVELRKSNVLMIGPTGSGKTLLAQ 128

Query: 73  VVARELGVNFRSTSGPVIAKAG----DLAALLTNL----------EDRDVLFIDEIHRLS 118
            +AR L V F       + +AG    D+  +L  L            R +++IDEI +++
Sbjct: 129 TLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDIEKAQRGIIYIDEIDKIA 188


>gi|288554680|ref|YP_003426615.1| ATP-dependent Zn metallopeptidase [Bacillus pseudofirmus OF4]
 gi|298286810|sp|P94304|FTSH_BACPE RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|288545840|gb|ADC49723.1| cell-division protein (ATP-dependent Zn metallopeptidase) [Bacillus
           pseudofirmus OF4]
          Length = 679

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 202 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 261

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 262 IFIDEI 267


>gi|271965030|ref|YP_003339226.1| ATP-dependent protease ATP-binding subunit [Streptosporangium
           roseum DSM 43021]
 gi|270508205|gb|ACZ86483.1| ATP-dependent protease ATP-binding subunit [Streptosporangium
           roseum DSM 43021]
          Length = 431

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 59/145 (40%), Gaps = 37/145 (25%)

Query: 11  NVSQEDADISLLRPRTLEEF-----TGQVEACSNLKVFI----------EAAKARAEA-- 53
           N S ED    L +PR + EF      GQ  A   L V +           A   R  A  
Sbjct: 51  NGSPEDGPRDLPKPREIYEFLEQYVVGQESAKKTLSVAVYNHYKRIRPGAAGNGRPPAEK 110

Query: 54  ------LDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL---- 103
                   ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+    
Sbjct: 111 EPVELGKSNILLIGPTGCGKTYLAQTLARMLDVPFAIADATALTEAGYVGEDVENILLKL 170

Query: 104 ---EDRDV-------LFIDEIHRLS 118
               D DV       ++IDEI +++
Sbjct: 171 LQAADYDVKKAETGIVYIDEIDKVA 195


>gi|256397526|ref|YP_003119090.1| ATP-dependent metalloprotease FtsH [Catenulispora acidiphila DSM
           44928]
 gi|256363752|gb|ACU77249.1| ATP-dependent metalloprotease FtsH [Catenulispora acidiphila DSM
           44928]
          Length = 672

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 34/59 (57%), Gaps = 6/59 (10%)

Query: 34  VEACSNLKVFIEAAKARAEAL-----DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VE    +K F+EA  A+ +A+       VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 185 VEELQEVKEFLEAP-AKFQAIGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISG 242


>gi|229194456|ref|ZP_04321260.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus m1293]
 gi|228589046|gb|EEK47060.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus m1293]
          Length = 612

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 177 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 236

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 237 IFIDEI 242


>gi|241951494|ref|XP_002418469.1| peroxin, putative; peroxisomal biogenesis factor, putative;
           peroxisome biosynthesis protein, putative [Candida
           dubliniensis CD36]
 gi|223641808|emb|CAX43770.1| peroxin, putative [Candida dubliniensis CD36]
          Length = 1158

 Score = 42.4 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 17/32 (53%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +LF GPPG GKT LA+ +A    +NF S  GP
Sbjct: 849 ILFYGPPGTGKTLLAKAIATNFSLNFFSVKGP 880


>gi|254502854|ref|ZP_05115005.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Labrenzia
           alexandrii DFL-11]
 gi|222438925|gb|EEE45604.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Labrenzia
           alexandrii DFL-11]
          Length = 421

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L VGP G GKT LAQ +AR L V F       + +AG +   + N+         
Sbjct: 110 AKSNILLVGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSAD 169

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDEI ++S
Sbjct: 170 YNVERAQRGIVYIDEIDKIS 189


>gi|154339736|ref|XP_001565825.1| replication factor C, subunit 4 [Leishmania braziliensis
          MHOM/BR/75/M2904]
 gi|134063143|emb|CAM45343.1| putative replication factor C, subunit 4 [Leishmania braziliensis
          MHOM/BR/75/M2904]
          Length = 360

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+T+ +  G  EA S L+V      A+   L ++L  GPPG GKTT    +AR+L
Sbjct: 13 RPQTVTDIVGNTEAISRLQVI-----AKEGNLPNLLLCGPPGTGKTTSMLCLARDL 63


>gi|51467970|ref|NP_001003862.1| replication factor C subunit 5 [Danio rerio]
 gi|49618977|gb|AAT68073.1| replication factor C subunit RFC5 [Danio rerio]
 gi|220673394|emb|CAX13672.1| replication factor C (activator 1) 5 [Danio rerio]
          Length = 334

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+TL++     +  S ++ FI   +     L H+LF GPPG GKT+     AR+L
Sbjct: 21 RPQTLDDLISHQDILSTIQKFISEDR-----LPHLLFYGPPGTGKTSTILACARQL 71


>gi|296392741|ref|YP_003657625.1| ATPase AAA [Segniliparus rotundus DSM 44985]
 gi|296179888|gb|ADG96794.1| AAA ATPase central domain protein [Segniliparus rotundus DSM 44985]
          Length = 609

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 52/108 (48%), Gaps = 20/108 (18%)

Query: 30  FTGQVEACSNLKVFIEAAKARAEA--------LDHVLFVGPPGLGKTTLAQVVAR---EL 78
            +G  +  + L+  ++ A+ RAE           H+ F GPPG GKTT+A+VVA+    L
Sbjct: 327 MSGVKQQVARLQATVQMARLRAEKGLGGGQAKSQHLAFTGPPGTGKTTIARVVAKIYCGL 386

Query: 79  GV----NFRSTSGP--VIAKAGDLAALLTNLEDR---DVLFIDEIHRL 117
           G+    N   TS    V    G  A   T L DR    VLFIDE + L
Sbjct: 387 GLLKTANVLETSRKDFVGEHLGSTAIKTTALIDRAMDGVLFIDEAYTL 434


>gi|282859187|ref|ZP_06268309.1| ATP-dependent metallopeptidase HflB [Prevotella bivia JCVIHMP010]
 gi|282588006|gb|EFB93189.1| ATP-dependent metallopeptidase HflB [Prevotella bivia JCVIHMP010]
          Length = 707

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 94/222 (42%), Gaps = 38/222 (17%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VL 109
           L +GPPG GKT LA+ VA E GV F S SG       V   A  +  +    +++   ++
Sbjct: 233 LLIGPPGTGKTLLAKAVAGEAGVPFFSMSGSDFVEMFVGVGASRVRDVFHQAKEKAPCII 292

Query: 110 FIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINL-----------SRFTLIA 158
           FIDEI  +     +   P+M           G   R   +N            S   ++A
Sbjct: 293 FIDEIDAVGRARSK--NPSM----------GGNDERENTLNALLTEMDGFGTNSGVIVMA 340

Query: 159 ATTRVGLLTNPL--QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSR 216
           AT RV +L   L    RF   I ++  ++ + K I +       L  T     +I + SR
Sbjct: 341 ATNRVDMLDKALLRAGRFDRQIHVDLPDLPERKAIFKVHMAKLKLDTT----VDIDLLSR 396

Query: 217 GTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKM 258
            TP  +G  +  V + A +  A+  +++I     L  AID++
Sbjct: 397 QTPGFSGADIANVCNEAALIAARHSSKQIGKQDFLD-AIDRI 437


>gi|228912805|ref|ZP_04076453.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228925319|ref|ZP_04088416.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228931568|ref|ZP_04094475.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228943872|ref|ZP_04106258.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228983321|ref|ZP_04143535.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229089197|ref|ZP_04220479.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           Rock3-42]
 gi|229119728|ref|ZP_04248990.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           95/8201]
 gi|229136912|ref|ZP_04265540.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           BDRD-ST26]
 gi|229153844|ref|ZP_04281975.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus ATCC
           4342]
 gi|229182460|ref|ZP_04309712.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus BGSC
           6E1]
 gi|228601040|gb|EEK58608.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus BGSC
           6E1]
 gi|228629648|gb|EEK86344.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus ATCC
           4342]
 gi|228646577|gb|EEL02783.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           BDRD-ST26]
 gi|228663753|gb|EEL19331.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           95/8201]
 gi|228694160|gb|EEL47841.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           Rock3-42]
 gi|228776435|gb|EEM24787.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228815829|gb|EEM62064.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228828120|gb|EEM73847.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228834366|gb|EEM79906.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228846865|gb|EEM91869.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 612

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 177 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 236

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 237 IFIDEI 242


>gi|269213481|ref|ZP_06157997.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           cinerea ATCC 14685]
 gi|269146222|gb|EEZ72640.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           cinerea ATCC 14685]
          Length = 394

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +AR+L V F       + +AG    D+  ++T L        
Sbjct: 94  NILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDV 153

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 154 EKAQRGIVYIDEIDKIS 170


>gi|186681813|ref|YP_001865009.1| ATP-dependent metalloprotease FtsH [Nostoc punctiforme PCC 73102]
 gi|186464265|gb|ACC80066.1| ATP-dependent metalloprotease FtsH [Nostoc punctiforme PCC 73102]
          Length = 628

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ +A E GV F S SG       V   A  +  L    +D    +
Sbjct: 209 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKDNAPCI 268

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 269 IFIDEI 274


>gi|30260256|ref|NP_842633.1| cell division protein FtsH [Bacillus anthracis str. Ames]
 gi|47525318|ref|YP_016667.1| cell division protein FtsH [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49183099|ref|YP_026351.1| cell division protein FtsH [Bacillus anthracis str. Sterne]
 gi|49476704|ref|YP_034418.1| cell division protein [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|52145151|ref|YP_081677.1| cell division protein [Bacillus cereus E33L]
 gi|65317526|ref|ZP_00390485.1| COG0465: ATP-dependent Zn proteases [Bacillus anthracis str. A2012]
 gi|118475836|ref|YP_892987.1| FtsH-2 peptidase [Bacillus thuringiensis str. Al Hakam]
 gi|165872578|ref|ZP_02217210.1| cell division protein FtsH [Bacillus anthracis str. A0488]
 gi|167635100|ref|ZP_02393417.1| cell division protein FtsH [Bacillus anthracis str. A0442]
 gi|167641516|ref|ZP_02399764.1| cell division protein FtsH [Bacillus anthracis str. A0193]
 gi|170707578|ref|ZP_02898031.1| cell division protein FtsH [Bacillus anthracis str. A0389]
 gi|177655624|ref|ZP_02936987.1| cell division protein FtsH [Bacillus anthracis str. A0174]
 gi|190568979|ref|ZP_03021880.1| cell division protein FtsH [Bacillus anthracis Tsiankovskii-I]
 gi|196036369|ref|ZP_03103766.1| cell division protein FtsH [Bacillus cereus W]
 gi|196041768|ref|ZP_03109058.1| cell division protein FtsH [Bacillus cereus NVH0597-99]
 gi|196047383|ref|ZP_03114596.1| cell division protein FtsH [Bacillus cereus 03BB108]
 gi|206977945|ref|ZP_03238832.1| cell division protein FtsH [Bacillus cereus H3081.97]
 gi|217957641|ref|YP_002336183.1| cell division protein FtsH [Bacillus cereus AH187]
 gi|218901267|ref|YP_002449101.1| cell division protein FtsH [Bacillus cereus AH820]
 gi|222093835|ref|YP_002527884.1| cell division protein [Bacillus cereus Q1]
 gi|225862118|ref|YP_002747496.1| cell division protein FtsH [Bacillus cereus 03BB102]
 gi|227812739|ref|YP_002812748.1| cell division protein FtsH [Bacillus anthracis str. CDC 684]
 gi|229600537|ref|YP_002864717.1| cell division protein FtsH [Bacillus anthracis str. A0248]
 gi|254724206|ref|ZP_05185991.1| cell division protein FtsH [Bacillus anthracis str. A1055]
 gi|254735467|ref|ZP_05193175.1| cell division protein FtsH [Bacillus anthracis str. Western North
           America USA6153]
 gi|254744631|ref|ZP_05202310.1| cell division protein FtsH [Bacillus anthracis str. Kruger B]
 gi|254756336|ref|ZP_05208365.1| cell division protein FtsH [Bacillus anthracis str. Vollum]
 gi|254762392|ref|ZP_05214234.1| cell division protein FtsH [Bacillus anthracis str. Australia 94]
 gi|300119160|ref|ZP_07056861.1| cell division protein FtsH [Bacillus cereus SJ1]
 gi|30253577|gb|AAP24119.1| cell division protein FtsH [Bacillus anthracis str. Ames]
 gi|47500466|gb|AAT29142.1| cell division protein FtsH [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49177026|gb|AAT52402.1| cell division protein FtsH [Bacillus anthracis str. Sterne]
 gi|49328260|gb|AAT58906.1| cell division protein [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|51978620|gb|AAU20170.1| cell division protein [Bacillus cereus E33L]
 gi|118415061|gb|ABK83480.1| membrane protease FtsH catalytic subunit [Bacillus thuringiensis
           str. Al Hakam]
 gi|164711706|gb|EDR17251.1| cell division protein FtsH [Bacillus anthracis str. A0488]
 gi|167510501|gb|EDR85899.1| cell division protein FtsH [Bacillus anthracis str. A0193]
 gi|167529574|gb|EDR92324.1| cell division protein FtsH [Bacillus anthracis str. A0442]
 gi|170127574|gb|EDS96448.1| cell division protein FtsH [Bacillus anthracis str. A0389]
 gi|172080035|gb|EDT65134.1| cell division protein FtsH [Bacillus anthracis str. A0174]
 gi|190559903|gb|EDV13887.1| cell division protein FtsH [Bacillus anthracis Tsiankovskii-I]
 gi|195990999|gb|EDX54970.1| cell division protein FtsH [Bacillus cereus W]
 gi|196021785|gb|EDX60479.1| cell division protein FtsH [Bacillus cereus 03BB108]
 gi|196027388|gb|EDX66005.1| cell division protein FtsH [Bacillus cereus NVH0597-99]
 gi|206743851|gb|EDZ55271.1| cell division protein FtsH [Bacillus cereus H3081.97]
 gi|217067927|gb|ACJ82177.1| cell division protein FtsH [Bacillus cereus AH187]
 gi|218538348|gb|ACK90746.1| cell division protein FtsH [Bacillus cereus AH820]
 gi|221237882|gb|ACM10592.1| cell division protein [Bacillus cereus Q1]
 gi|225790446|gb|ACO30663.1| cell division protein FtsH [Bacillus cereus 03BB102]
 gi|227006912|gb|ACP16655.1| cell division protein FtsH [Bacillus anthracis str. CDC 684]
 gi|229264945|gb|ACQ46582.1| cell division protein FtsH [Bacillus anthracis str. A0248]
 gi|298723482|gb|EFI64223.1| cell division protein FtsH [Bacillus cereus SJ1]
 gi|324324055|gb|ADY19315.1| cell division protein FtsH [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 633

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 257

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 258 IFIDEI 263


>gi|332970938|gb|EGK09912.1| cell division protein FtsH [Desmospora sp. 8437]
          Length = 632

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 32/60 (53%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           EE T  VE    LK   + A   A     VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 168 EEKTELVEVVDFLKDPRKFAAVGARIPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISG 227


>gi|301051803|ref|YP_003790014.1| cell division protein [Bacillus anthracis CI]
 gi|300373972|gb|ADK02876.1| cell division protein [Bacillus cereus biovar anthracis str. CI]
          Length = 633

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 257

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 258 IFIDEI 263


>gi|311743053|ref|ZP_07716861.1| ATP-dependent Clp protease ATP-binding subunit [Aeromicrobium
           marinum DSM 15272]
 gi|311313733|gb|EFQ83642.1| ATP-dependent Clp protease ATP-binding subunit [Aeromicrobium
           marinum DSM 15272]
          Length = 422

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------ED 105
           A  ++L VGP G GKT LAQ +AR L V F       + +AG +   + N+        D
Sbjct: 113 AKSNILMVGPTGCGKTYLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAAD 172

Query: 106 RDV-------LFIDEIHRLS 118
            DV       ++IDEI ++S
Sbjct: 173 YDVKKAETGIIYIDEIDKIS 192


>gi|229176666|ref|ZP_04304071.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           172560W]
 gi|229188351|ref|ZP_04315400.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus ATCC
           10876]
 gi|228595150|gb|EEK52920.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus ATCC
           10876]
 gi|228606833|gb|EEK64249.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           172560W]
          Length = 612

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 177 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 236

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 237 IFIDEI 242


>gi|149183225|ref|ZP_01861670.1| FtsH [Bacillus sp. SG-1]
 gi|148849058|gb|EDL63263.1| FtsH [Bacillus sp. SG-1]
          Length = 608

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 181 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 240

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 241 IFIDEI 246


>gi|91086165|ref|XP_970259.1| PREDICTED: similar to GA17483-PA [Tribolium castaneum]
 gi|270009883|gb|EFA06331.1| hypothetical protein TcasGA2_TC009202 [Tribolium castaneum]
          Length = 716

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F   +GP      V   A  +  L  + +++   V
Sbjct: 311 VLLVGPPGTGKTLLARAVAGEAGVPFFHAAGPEFDEILVGQGARRVRDLFKSAKEKAPCV 370

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 371 IFIDEI 376


>gi|73669571|ref|YP_305586.1| replication factor C large subunit [Methanosarcina barkeri str.
           Fusaro]
 gi|110287808|sp|Q46AT6|RFCL_METBF RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|72396733|gb|AAZ71006.1| replication factor C large subunit [Methanosarcina barkeri str.
           Fusaro]
          Length = 642

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 7/98 (7%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR------ 76
           RP+TL+E  G  +A   L+ + E   +       V+  GP G+GKT+ A  +AR      
Sbjct: 12  RPQTLKEIVGNKKAVQYLRTWAEKWLSGIPDRRAVVLHGPAGVGKTSTAHALARDLDWEV 71

Query: 77  -ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDE 113
            EL  + + T+G +   AG  A++ T    + ++ +DE
Sbjct: 72  IELNASDQRTAGVIERVAGSAASMNTFFGGKRLIILDE 109


>gi|16329602|ref|NP_440330.1| cell division protein FtsH [Synechocystis sp. PCC 6803]
 gi|2492513|sp|P72991|FTSH3_SYNY3 RecName: Full=ATP-dependent zinc metalloprotease FtsH 3
 gi|1652085|dbj|BAA17010.1| cell division protein; FtsH [Synechocystis sp. PCC 6803]
          Length = 616

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 31/59 (52%), Gaps = 3/59 (5%)

Query: 29  EFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           E T  V+   N   F E     A+    VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 172 ELTEVVDFLKNADRFTELG---AKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 227


>gi|163938073|ref|YP_001642957.1| ATP-dependent metalloprotease FtsH [Bacillus weihenstephanensis
           KBAB4]
 gi|163860270|gb|ABY41329.1| ATP-dependent metalloprotease FtsH [Bacillus weihenstephanensis
           KBAB4]
          Length = 633

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 257

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 258 IFIDEI 263


>gi|299740851|ref|XP_001834051.2| ATP-dependent protease La [Coprinopsis cinerea okayama7#130]
 gi|298404439|gb|EAU87743.2| ATP-dependent protease La [Coprinopsis cinerea okayama7#130]
          Length = 988

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 80/197 (40%), Gaps = 51/197 (25%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRS--------------------TSGPVIAKAGDL 96
           +LFVGPPG GKT+L Q +A+ LG  F+                      SGP +     +
Sbjct: 507 LLFVGPPGTGKTSLGQSIAKSLGRPFQRISLGGVRDEAEIRGHRRTYVASGPGLI----V 562

Query: 97  AALLTNLEDRDVLFIDEIHRL---------SIIVEEILYPAMEDFQLDLMVGEGPSARSV 147
            AL        VL +DEI ++            + E+L P       D  +       +V
Sbjct: 563 QALRKAGRPDPVLLLDEIDKIGQSNFHGDPGAALLEVLDPEQNWSFNDHYI-------NV 615

Query: 148 KINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR----------GAK 197
            I+LS+   I     +  ++ PL DR  + I+L+ Y  ++   I +R          G +
Sbjct: 616 PIDLSQVLFICTANSLETISAPLLDRCEV-IQLSGYTYDEKLHIARRFLLPKQLTANGLE 674

Query: 198 LTGLAVTDEAACEIAMR 214
              + +T+ A  EIA R
Sbjct: 675 KEHVNITEPAMLEIATR 691


>gi|228963166|ref|ZP_04124336.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228796551|gb|EEM43989.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 585

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 150 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 209

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 210 IFIDEI 215


>gi|229074127|ref|ZP_04207174.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           Rock4-18]
 gi|229094787|ref|ZP_04225793.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           Rock3-29]
 gi|229100862|ref|ZP_04231670.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           Rock3-28]
 gi|229113742|ref|ZP_04243178.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           Rock1-3]
 gi|228669739|gb|EEL25145.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           Rock1-3]
 gi|228682562|gb|EEL36631.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           Rock3-28]
 gi|228688655|gb|EEL42527.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           Rock3-29]
 gi|228709021|gb|EEL61147.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           Rock4-18]
          Length = 612

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 177 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 236

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 237 IFIDEI 242


>gi|257051091|ref|YP_003128924.1| Vesicle-fusing ATPase [Halorhabdus utahensis DSM 12940]
 gi|256689854|gb|ACV10191.1| Vesicle-fusing ATPase [Halorhabdus utahensis DSM 12940]
          Length = 699

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 52/126 (41%), Gaps = 16/126 (12%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFV 60
           S + + E  D S     T E+  G  +    ++  IE   +  +  D         VL  
Sbjct: 167 SEDDTTESGDASEPGSVTYEDIGGLDDELDRVREMIELPLSDPDVFDRLGIEPPKGVLLY 226

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLEDR--DVLFID 112
           GPPG GKT +A+ VA E+   F + SGP I           L       ED    +LF+D
Sbjct: 227 GPPGTGKTLIARAVANEVDAYFEAISGPEIVSKYKGESEEQLREAFERAEDEAPSILFVD 286

Query: 113 EIHRLS 118
           EI  ++
Sbjct: 287 EIDSIA 292



 Score = 37.7 bits (86), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ +A E  VNF   +GP
Sbjct: 480 VLLYGPPGTGKTLLARSLAGETDVNFIRVAGP 511


>gi|303280281|ref|XP_003059433.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226459269|gb|EEH56565.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 673

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNL------EDRDV 108
           VL  GPPG GKTTLA  +ARE GV F S +    V   +G+  A +  L          +
Sbjct: 50  VLLHGPPGCGKTTLAHAIAREAGVPFFSIAATEIVAGVSGESEAKIRQLFAAAAQAAPSI 109

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 110 VFIDEI 115


>gi|242279529|ref|YP_002991658.1| ATP-dependent protease La [Desulfovibrio salexigens DSM 2638]
 gi|242122423|gb|ACS80119.1| ATP-dependent protease La [Desulfovibrio salexigens DSM 2638]
          Length = 817

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 78/192 (40%), Gaps = 48/192 (25%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           + F GPPG+GKT++A+ +AR +G  F R + G V  +A              G +   L 
Sbjct: 364 LCFAGPPGVGKTSIARSIARAMGREFVRLSLGGVRDEAEIRGHRRTYVGALPGKIIQSLR 423

Query: 102 NLE-DRDVLFIDEIHRLSI--------IVEEILYP----AMEDFQLDLMVGEGPSARSVK 148
             E    V+ +DE+ ++S          + E+L P       D  LDL            
Sbjct: 424 RCEFSNPVICLDEVDKMSTDFRGDPSAALLEVLDPEQNGTFNDHYLDL-----------D 472

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL---------KTIVQRGAKLT 199
            +LS+   I     +  +  PLQDR  I     + E E +         K + + G K  
Sbjct: 473 YDLSKVFFITTANDLHSIPLPLQDRMEIINLPGYLETEKMHIAKDFLLPKQVGEHGLKED 532

Query: 200 GLAVTDEAACEI 211
            LA++D A  +I
Sbjct: 533 NLAISDNAMIDI 544


>gi|203284370|ref|YP_002222110.1| DNA polymerase III, subunits gamma and tau [Borrelia duttonii Ly]
 gi|201083813|gb|ACH93404.1| DNA polymerase III, subunits gamma and tau [Borrelia duttonii Ly]
          Length = 555

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 93/231 (40%), Gaps = 41/231 (17%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPR      GQ      LK  IE+ K  A A    +F GP G+GKT+ A+  +R L    
Sbjct: 19  RPRDFTSLEGQDFVVETLKHSIESNKI-ANAY---IFSGPRGVGKTSSARAFSRCLNCQ- 73

Query: 83  RSTSGPVIAKAGDL--AALLTNLEDRDVLFIDEIHRLSI-----IVEEILYPAMED---- 131
              +GP I   G       + N    DV+ ID     S+     I EEI++P        
Sbjct: 74  ---TGPTIMPCGTCFNCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPANSRYRV 130

Query: 132 FQLDLMVGEGPSA-----RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF---- 182
           + +D +     SA     ++V+   +    I ATT V  L + ++ R       NF    
Sbjct: 131 YIIDEVHMLSNSAFNALLKTVEEPPNYIVFIFATTEVHKLPDTIKSRCQ---HFNFRLLP 187

Query: 183 ----YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
               YE+  LK +         +   DEA   IA +S G+ R A  L  ++
Sbjct: 188 LDKIYEM--LKCVCLED----DIKYEDEALKWIAYKSGGSVRDAYTLFDQI 232


>gi|194246442|ref|YP_002004081.1| similar to ATP-dependent Zn protease [Candidatus Phytoplasma mali]
 gi|193806799|emb|CAP18226.1| similar to ATP-dependent Zn protease [Candidatus Phytoplasma mali]
          Length = 467

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 33  QVEACSNLKVFIEAAKARAEALDH-VLFVGPPGLGKTTLAQVVARELGVNFRS 84
           Q+    N + F+ A K +   L   V+F GPPG GKT LA+  A+E  ++F +
Sbjct: 133 QLRKADNQEFFLRATKHKTNKLPKGVVFYGPPGTGKTYLAKCFAKEAQMSFYT 185


>gi|42779144|ref|NP_976391.1| cell division protein FtsH [Bacillus cereus ATCC 10987]
 gi|42735059|gb|AAS38999.1| cell division protein FtsH [Bacillus cereus ATCC 10987]
          Length = 633

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 257

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 258 IFIDEI 263


>gi|308479944|ref|XP_003102180.1| hypothetical protein CRE_06764 [Caenorhabditis remanei]
 gi|308262335|gb|EFP06288.1| hypothetical protein CRE_06764 [Caenorhabditis remanei]
          Length = 365

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 33/73 (45%), Gaps = 5/73 (6%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
          RP  L+E     +    L  FIE        L H+LF GPPG GKTT     AR++    
Sbjct: 18 RPSKLDELVAHEQVVKTLTKFIEN-----RTLPHLLFYGPPGTGKTTTVLAAARKMYSPA 72

Query: 83 RSTSGPVIAKAGD 95
          R +S  +   A D
Sbjct: 73 RMSSMVLELNASD 85


>gi|255316772|gb|ACU01771.1| protease FtsH-like protein 4 [Brachypodium distachyon]
          Length = 589

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ +A E GV F S SG       V   A  +  L +  + R   +
Sbjct: 133 VLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCI 192

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 193 IFIDEI 198


>gi|229027912|ref|ZP_04184067.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus AH1271]
 gi|228733426|gb|EEL84253.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus AH1271]
          Length = 612

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 177 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 236

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 237 IFIDEI 242


>gi|148906545|gb|ABR16425.1| unknown [Picea sitchensis]
          Length = 1036

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 32/55 (58%)

Query: 40  LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG 94
           +K  ++  K R +    +L  GPPG GKT LA+ +ARE G+ F   SG   +++G
Sbjct: 538 MKNPLQYYKKRVKLPRGILLSGPPGTGKTLLARAIARECGLPFVFASGAEFSESG 592


>gi|315230875|ref|YP_004071311.1| cell division protein FtsH [Thermococcus barophilus MP]
 gi|315183903|gb|ADT84088.1| cell division protein FtsH [Thermococcus barophilus MP]
          Length = 834

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 16/115 (13%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
           T E+  G  +A   ++  +E      E  +         VL  GPPG GKT LA+ VA E
Sbjct: 208 TYEDIGGLKDAIQKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANE 267

Query: 78  LGVNFRSTSGPVIAKA--GD----LAALLTNLEDR--DVLFIDEIHRLSIIVEEI 124
              +F + +GP I     G+    L  +    E+    ++FIDEI  ++   EE+
Sbjct: 268 TNAHFIAINGPEIMSKFYGESEERLREVFKEAEENAPSIIFIDEIDAIAPKREEV 322



 Score = 37.7 bits (86), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 34/75 (45%), Gaps = 18/75 (24%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR---------- 106
           +L  GPPG GKT LA+ VA E   NF    GP +     L+  +   E R          
Sbjct: 582 ILLYGPPGTGKTMLAKAVATESEANFIGIRGPEV-----LSKWVGESEKRIREIFRKARQ 636

Query: 107 ---DVLFIDEIHRLS 118
               V+FIDEI  ++
Sbjct: 637 AAPTVVFIDEIDAIA 651


>gi|149072041|ref|YP_001293616.1| cell division protein [Rhodomonas salina]
 gi|134302992|gb|ABO70796.1| cell division protein [Rhodomonas salina]
          Length = 628

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 99/241 (41%), Gaps = 42/241 (17%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ +A E GV F S SG       V   A  +  L    ++    +
Sbjct: 209 VLLVGPPGTGKTLLAKAIAGESGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENSPCI 268

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINL-----------SRFTLI 157
           +FIDEI  +               Q    +G G   R   +N            +   +I
Sbjct: 269 VFIDEIDAVG-------------RQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIII 315

Query: 158 AATTRVGLLTNPL--QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRS 215
           AAT RV +L   L    RF   + +N  ++     I+   A+   L  ++E + E+  R 
Sbjct: 316 AATNRVDVLDAALLRPGRFDRQVTVNVPDVRGRLEILNVHARNKKL--SEEISLEVIARR 373

Query: 216 RGTPRIAGRLLRRVRDFAEVAHA----KTITREIADAALLRLAIDKMGFDQLDLRYLTMI 271
             TP  +G  L  + + A +  A    K +T    DA++ R+     G   +D +   +I
Sbjct: 374 --TPGFSGADLANLLNEAAILTARRRKKAVTMSEVDASIDRVIAGMEGTALVDSKTKRLI 431

Query: 272 A 272
           A
Sbjct: 432 A 432


>gi|14521559|ref|NP_127035.1| cell division control protein [Pyrococcus abyssi GE5]
 gi|5458778|emb|CAB50265.1| ATPase of the AAA+ family [Pyrococcus abyssi GE5]
          Length = 840

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 52/116 (44%), Gaps = 16/116 (13%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
           T E+  G  EA   ++  +E      E  +         VL  GPPG GKT LA+ VA E
Sbjct: 210 TYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANE 269

Query: 78  LGVNFRSTSGPVIAKA--GD----LAALLTNLEDR--DVLFIDEIHRLSIIVEEIL 125
               F + +GP I     G+    L  +    E+    ++FIDEI  ++   EE++
Sbjct: 270 ANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKREEVV 325



 Score = 38.1 bits (87), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL  GPPG GKT LA+ VA E   NF +  GP +
Sbjct: 584 VLLYGPPGTGKTLLAKAVATESQANFIAIRGPEV 617


>gi|313897534|ref|ZP_07831076.1| cell division protease FtsH [Clostridium sp. HGF2]
 gi|312957486|gb|EFR39112.1| cell division protease FtsH [Clostridium sp. HGF2]
          Length = 617

 Score = 42.0 bits (97), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 53/105 (50%), Gaps = 15/105 (14%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +T  +  GQ EA + L+  +E  K+        A+     L VGPPG GKT LA+ VA E
Sbjct: 165 KTFLDVAGQEEAKAALQEMVEFLKSPQRYTQIGAQMPKGALLVGPPGTGKTLLAKAVAGE 224

Query: 78  LGVNFRSTSGPVIAK--AGDLAALLTNL--EDRD----VLFIDEI 114
             V F S SG    +   G  AA + +L  + R+    ++FIDEI
Sbjct: 225 ANVPFFSISGSEFVEMFVGRGAARVRDLFKQAREKAPCIVFIDEI 269


>gi|282901547|ref|ZP_06309469.1| Peptidase M41, FtsH [Cylindrospermopsis raciborskii CS-505]
 gi|281193590|gb|EFA68565.1| Peptidase M41, FtsH [Cylindrospermopsis raciborskii CS-505]
          Length = 628

 Score = 42.0 bits (97), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ +A E GV F S SG       V   A  +  L    +D    +
Sbjct: 209 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKDNAPCI 268

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 269 IFIDEI 274


>gi|299820645|ref|ZP_07052534.1| ATP-dependent metalloprotease FtsH [Listeria grayi DSM 20601]
 gi|299817666|gb|EFI84901.1| ATP-dependent metalloprotease FtsH [Listeria grayi DSM 20601]
          Length = 687

 Score = 42.0 bits (97), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 214 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 273

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 274 IFIDEI 279


>gi|254166710|ref|ZP_04873564.1| ATPase, AAA family protein [Aciduliprofundum boonei T469]
 gi|289596184|ref|YP_003482880.1| AAA ATPase central domain protein [Aciduliprofundum boonei T469]
 gi|197624320|gb|EDY36881.1| ATPase, AAA family protein [Aciduliprofundum boonei T469]
 gi|289533971|gb|ADD08318.1| AAA ATPase central domain protein [Aciduliprofundum boonei T469]
          Length = 437

 Score = 42.0 bits (97), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 33/61 (54%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          +   RP+ L +  G  +A + +  + E  +A   +   ++ VG PG GKTT A+ +A E+
Sbjct: 6  VEKYRPKRLRDIVGNTQAINEILRWAEEWEAGKPSYKALILVGKPGCGKTTTARALANEM 65

Query: 79 G 79
          G
Sbjct: 66 G 66


>gi|194374563|dbj|BAG57177.1| unnamed protein product [Homo sapiens]
          Length = 1075

 Score = 42.0 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/32 (59%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT LA V+ARE  +NF S  GP
Sbjct: 669 ILLYGPPGTGKTLLAGVIARESRMNFISVKGP 700


>gi|158337706|ref|YP_001518882.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris
           marina MBIC11017]
 gi|158307947|gb|ABW29564.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris
           marina MBIC11017]
          Length = 631

 Score = 42.0 bits (97), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 15/104 (14%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKAR-------AEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  E+ + L+  +E  K+        A+    VL VGPPG GKT +A+ VA E 
Sbjct: 168 TFDDVAGVEESKTELEEIVEFLKSPQRFTEIGAKIPKGVLLVGPPGTGKTLMAKAVAGEA 227

Query: 79  GVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEI 114
           GV F S SG    +   G  AA + +L ++       ++FIDE+
Sbjct: 228 GVPFFSISGSEFVELFVGTGAARVRDLFEQAKKKAPCIIFIDEL 271


>gi|46579689|ref|YP_010497.1| cell division protein FtsH [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120602831|ref|YP_967231.1| ATP-dependent metalloprotease FtsH [Desulfovibrio vulgaris DP4]
 gi|46449104|gb|AAS95756.1| cell division protein FtsH [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120563060|gb|ABM28804.1| membrane protease FtsH catalytic subunit [Desulfovibrio vulgaris
           DP4]
 gi|311233484|gb|ADP86338.1| ATP-dependent metalloprotease FtsH [Desulfovibrio vulgaris RCH1]
          Length = 656

 Score = 42.0 bits (97), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 72/275 (26%), Positives = 114/275 (41%), Gaps = 46/275 (16%)

Query: 9   SRNVSQEDADISLLR----PRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           +R ++QE A ++           EE +  VE  SN + F    +        VL VGPPG
Sbjct: 140 ARMITQESARVTFEDVAGVDEAKEELSEVVEFLSNPRKF---TRLGGRIPKGVLLVGPPG 196

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL------EDRDVLFIDEIHR 116
            GKT LA+ VA E GV F S SG    +   G  A+ + +L          ++FIDEI  
Sbjct: 197 TGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFMQGKKNAPCLIFIDEIDA 256

Query: 117 LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN-----LSRFT------LIAATTRVGL 165
           +               Q    +G G   R   +N     +  F       LIAAT R  +
Sbjct: 257 VG-------------RQRGAGLGGGHDEREQTLNQLLVEMDGFESNEGVILIAATNRPDV 303

Query: 166 LTNPL--QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAG 223
           L   L    RF   + +   ++   K I++   + T L+    +   + + ++GTP  +G
Sbjct: 304 LDPALLRPGRFDRQVVVPTPDVRGRKRILEVHGRRTPLS----SGVNLEIIAKGTPGFSG 359

Query: 224 RLLRRVRDFAEVAHAKTITREIADAALLRLAIDKM 258
             L  + + A +  AK + +++ D      A DK+
Sbjct: 360 ADLENLVNEAALQAAK-LNKDVVDMGDFEYAKDKV 393


>gi|71022951|ref|XP_761705.1| hypothetical protein UM05558.1 [Ustilago maydis 521]
 gi|46101091|gb|EAK86324.1| hypothetical protein UM05558.1 [Ustilago maydis 521]
          Length = 1129

 Score = 42.0 bits (97), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 94/234 (40%), Gaps = 52/234 (22%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAKAGDLAALLT 101
           +L VGPPG GKT++A+ +A  L   F   S                 V A  G + + L 
Sbjct: 651 LLLVGPPGTGKTSIAKSLASALQRPFTRLSLGGVRDEAEIRGHRRTYVGAMPGSIVSSLR 710

Query: 102 NLEDRD-VLFIDEIHRLS----------IIVEEILYPAMEDFQLDLMVGEGPSARSVKIN 150
            +   D V+ +DE+ +L             + E+L P       D  +       +V I+
Sbjct: 711 KVGVSDPVILLDEVDKLGSGNGLHGDPMAAMLEVLDPEQNHTFSDHYI-------NVPID 763

Query: 151 LSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR-----------GAKLT 199
           LSR   IA    +  ++ PL DR  + I ++ Y   D KT + R           G    
Sbjct: 764 LSRVLFIATANSLDTISPPLLDRTEV-IHISGY-THDEKTAIARQYLLPKQIKAQGLTSD 821

Query: 200 GLAVTDEAACEIAMRSRGTPRIAG-RLLRRVRDFAEVAHAKTITREIADAALLR 252
            L VTDE   ++AM   G  R AG R L   R+   +A AK +    +    LR
Sbjct: 822 QLVVTDEVLLKVAM---GYTREAGVRTLE--REIGALARAKAVEYSQSKKGTLR 870


>gi|325130451|gb|EGC53212.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           meningitidis OX99.30304]
          Length = 414

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +AR+L V F       + +AG    D+  ++T L        
Sbjct: 114 NILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDV 173

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 174 EKAQRGIVYIDEIDKIS 190


>gi|322695791|gb|EFY87593.1| AAA family ATPase, putative [Metarhizium acridum CQMa 102]
          Length = 2123

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 77/172 (44%), Gaps = 25/172 (14%)

Query: 38   SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-------GVNFRSTSGPVI 90
            SN+   I    + +E       +G PG GKTT+A++ A  L       G  F+ TSG  +
Sbjct: 1149 SNIDTKIRQELSLSEERLSCSLLGNPGTGKTTVARLWAEFLACTGALPGDGFKETSGSKL 1208

Query: 91   AKAG--DLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARS 146
            A  G      LL +L D    VLFIDE ++LS        P  +   LD ++ E  + R 
Sbjct: 1209 ANMGVSGCEKLLEDLRDNGGGVLFIDEAYQLSSGNS----PGGKAV-LDYLLAEVENLRG 1263

Query: 147  VKINLSRFTLIAATTR---VGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQR 194
             K++     +IA   +        NP    RF I +R N Y  ++L  I+QR
Sbjct: 1264 -KVSF----VIAGYDKQMETFFAHNPGFPSRFPIQMRFNDYSDDELLRILQR 1310


>gi|305663620|ref|YP_003859908.1| TBP-interacting protein TIP49 [Ignisphaera aggregans DSM 17230]
 gi|304378189|gb|ADM28028.1| TBP-interacting protein TIP49 [Ignisphaera aggregans DSM 17230]
          Length = 458

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 28/50 (56%)

Query: 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
            GQ+EA     + +   K    A   +LFVGPPG GKT LA  +ARELG
Sbjct: 43 LVGQIEARRAAGIVVRMIKEGRLAGRGILFVGPPGSGKTALAIAIARELG 92


>gi|289433575|ref|YP_003463447.1| ATP-dependent metalloprotease FtsH [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
 gi|289169819|emb|CBH26357.1| ATP-dependent metalloprotease FtsH [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
          Length = 691

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 217 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 276

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 277 IFIDEI 282


>gi|254825866|ref|ZP_05230867.1| FtsH [Listeria monocytogenes FSL J1-194]
 gi|293595105|gb|EFG02866.1| FtsH [Listeria monocytogenes FSL J1-194]
          Length = 691

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 216 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 275

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 276 IFIDEI 281


>gi|228950614|ref|ZP_04112749.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228809089|gb|EEM55573.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 585

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 150 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 209

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 210 IFIDEI 215


>gi|229015468|ref|ZP_04172468.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus AH1273]
 gi|229021677|ref|ZP_04178260.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus AH1272]
 gi|228739613|gb|EEL90026.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus AH1272]
 gi|228745826|gb|EEL95828.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus AH1273]
          Length = 584

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 147 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 206

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 207 IFIDEI 212


>gi|206972571|ref|ZP_03233514.1| cell division protein FtsH [Bacillus cereus AH1134]
 gi|229077355|ref|ZP_04210025.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           Rock4-2]
 gi|206732473|gb|EDZ49652.1| cell division protein FtsH [Bacillus cereus AH1134]
 gi|228705952|gb|EEL58268.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           Rock4-2]
          Length = 633

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 257

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 258 IFIDEI 263


>gi|162449912|ref|YP_001612279.1| putative membrane bound zinc metallopeptidase [Sorangium cellulosum
           'So ce 56']
 gi|310943099|sp|A9FDV9|FTSH2_SORC5 RecName: Full=ATP-dependent zinc metalloprotease FtsH 2
 gi|161160494|emb|CAN91799.1| putative membrane bound zinc metallopeptidase [Sorangium cellulosum
           'So ce 56']
          Length = 607

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 35/69 (50%), Gaps = 7/69 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA--RAEALDH-----VLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  EA + L   ++  KA  R E L       VL VGPPG GKT LA+ +A E 
Sbjct: 153 TFRDVAGNAEAKTELSEIVDFLKAPERYEKLGGRMPRGVLLVGPPGTGKTLLARAIAGEA 212

Query: 79  GVNFRSTSG 87
            V F S SG
Sbjct: 213 SVPFFSASG 221


>gi|115437800|ref|NP_001043384.1| Os01g0574400 [Oryza sativa Japonica Group]
 gi|75272532|sp|Q8LQJ9|FTSH4_ORYSJ RecName: Full=ATP-dependent zinc metalloprotease FTSH 4,
           mitochondrial; Short=OsFTSH4; Flags: Precursor
 gi|20521391|dbj|BAB91902.1| cell division protein-like [Oryza sativa Japonica Group]
 gi|113532915|dbj|BAF05298.1| Os01g0574400 [Oryza sativa Japonica Group]
 gi|125570900|gb|EAZ12415.1| hypothetical protein OsJ_02305 [Oryza sativa Japonica Group]
          Length = 709

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 259 VLLVGPPGTGKTMLARAVAGEAGVPFFSCSG 289


>gi|67470640|ref|XP_651283.1| replication factor C familiy protein [Entamoeba histolytica
          HM-1:IMSS]
 gi|56468001|gb|EAL45896.1| replication factor C familiy protein [Entamoeba histolytica
          HM-1:IMSS]
          Length = 325

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 6/63 (9%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81
          RP T +   G      +LK FI A +     + H+LF GPPG GKTT A  + ++L G  
Sbjct: 10 RPSTTDGIFGHEYILESLKQFINANQ-----IPHMLFYGPPGTGKTTTALAIVKQLCGTK 64

Query: 82 FRS 84
          F +
Sbjct: 65 FSA 67


>gi|329897203|ref|ZP_08271943.1| ATP-dependent protease La [gamma proteobacterium IMCC3088]
 gi|328921358|gb|EGG28752.1| ATP-dependent protease La [gamma proteobacterium IMCC3088]
          Length = 785

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 98/238 (41%), Gaps = 54/238 (22%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAKAGDLAALLT 101
           +L VGPPG+GKT++ + +A  LG  F   S                 + A  G     L 
Sbjct: 365 LLLVGPPGVGKTSIGKSIAESLGREFYRFSLGGMRDEAEIKGHRRTYIGAMPGKFIQALK 424

Query: 102 NLE-DRDVLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLS 152
           +++ +  V+ +DEI +L    +        E+L P      LD  +        ++++LS
Sbjct: 425 DVKVENPVIMLDEIDKLGQSFQGDPASALLEVLDPEQNSAFLDHYL-------DLRVDLS 477

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL----------KTIVQRGAKLTGLA 202
           +   +    ++  +  PL DR  + IRL  Y  E+           K + + GAK + + 
Sbjct: 478 KVLFVCTANQLDTIPGPLLDRMEV-IRLAGYIAEEKLAIAKNHLWPKLLAKHGAKRSQIR 536

Query: 203 VTDEAACEIAM---RSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257
           + D A   + +   R  G   +  +L R +R        K I  E+ +  L RL+I K
Sbjct: 537 INDAALKYVIVAYCREAGVRNLEKQLSRLIR--------KAIM-ELLERDLARLSISK 585


>gi|325290593|ref|YP_004266774.1| ATP-dependent protease LonB [Syntrophobotulus glycolicus DSM 8271]
 gi|324965994|gb|ADY56773.1| ATP-dependent protease LonB [Syntrophobotulus glycolicus DSM 8271]
          Length = 569

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 29/55 (52%), Gaps = 5/55 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           RP  L E  GQ E    LK  I  A  +     HVL  GPPG+GKT +A++V  E
Sbjct: 65  RPGDLREIIGQKEGVKALKAAICGANPQ-----HVLIYGPPGVGKTAVARLVLEE 114


>gi|320040847|gb|EFW22780.1| DNA replication factor C subunit [Coccidioides posadasii str.
           Silveira]
          Length = 398

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 5/56 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           RP TL++ +G  +  + +  FIE+ +     L H+L  GPPG GKT+    +AR++
Sbjct: 50  RPSTLDDVSGHQDIIATINRFIESNR-----LPHLLLYGPPGTGKTSTILALARQI 100


>gi|310639530|ref|YP_003944288.1| ATP-dependent metalloprotease ftsh [Paenibacillus polymyxa SC2]
 gi|309244480|gb|ADO54047.1| ATP-dependent metalloprotease FtsH [Paenibacillus polymyxa SC2]
          Length = 679

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 203 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 262

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 263 IFIDEI 268


>gi|308066893|ref|YP_003868498.1| cell division protein ftsH-like protein [Paenibacillus polymyxa
           E681]
 gi|305856172|gb|ADM67960.1| Cell division protein ftsH-like protein [Paenibacillus polymyxa
           E681]
          Length = 678

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 203 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 262

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 263 IFIDEI 268


>gi|240142553|ref|YP_002967066.1| protease, ATP-dependent zinc-metallo [Methylobacterium extorquens
           AM1]
 gi|240012500|gb|ACS43725.1| protease, ATP-dependent zinc-metallo [Methylobacterium extorquens
           AM1]
          Length = 610

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 42/81 (51%), Gaps = 8/81 (9%)

Query: 45  EAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTN 102
           E  K  A     +L VGPPG GKT LA+ VA E GV F S SG    +   G  AA + +
Sbjct: 180 EYGKLGAHIPKGILLVGPPGTGKTLLARAVAGEAGVTFFSISGSEFVEMFVGVGAARVRD 239

Query: 103 LEDR------DVLFIDEIHRL 117
           L ++       ++FIDE+  L
Sbjct: 240 LFEQARKSAPAIIFIDELDAL 260


>gi|229159239|ref|ZP_04287264.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           R309803]
 gi|228624254|gb|EEK81055.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           R309803]
          Length = 612

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 177 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 236

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 237 IFIDEI 242


>gi|241666946|ref|YP_002985030.1| AAA family ATPase, CDC48 subfamily [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240862403|gb|ACS60068.1| AAA family ATPase, CDC48 subfamily [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 704

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 8/76 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLAALLTNLEDR------DV 108
           VL  GPPG GKT LA+ VA E   NF   +GP I  +K G+    L  +          +
Sbjct: 188 VLLYGPPGTGKTLLARAVANETEANFFHIAGPEIMGSKYGESEERLRQVFQEASQNAPSI 247

Query: 109 LFIDEIHRLSIIVEEI 124
           +FIDEI  ++   E++
Sbjct: 248 IFIDEIDSIAPKREQV 263



 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 8/69 (11%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRST-SGPVIAK-AGDLAALLTNLEDR------DVL 109
           L  GPPG GKT LA+ VARE   NF +T S  +++K  G+    ++ L +R       V+
Sbjct: 461 LLFGPPGTGKTLLAKAVAREAEANFVATKSSDLLSKWYGESEQQVSRLFERARQVAPTVI 520

Query: 110 FIDEIHRLS 118
           FIDEI  L+
Sbjct: 521 FIDEIDSLA 529


>gi|11465793|ref|NP_053937.1| cell division protein [Porphyra purpurea]
 gi|1706926|sp|P51327|FTSH_PORPU RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|1276793|gb|AAC08213.1| hypothetical chloroplast ORF 25 [Porphyra purpurea]
          Length = 628

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ +A E GV F S SG       V   A  +  L    +D    +
Sbjct: 209 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKDNAPCI 268

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 269 VFIDEI 274


>gi|66817990|ref|XP_642688.1| peptidase S16, Lon protease family protein [Dictyostelium
           discoideum AX4]
 gi|74857001|sp|Q550C8|LONM2_DICDI RecName: Full=Lon protease homolog, mitochondrial 2; Flags:
           Precursor
 gi|60470868|gb|EAL68840.1| peptidase S16, Lon protease family protein [Dictyostelium
           discoideum AX4]
          Length = 836

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 67/259 (25%), Positives = 95/259 (36%), Gaps = 55/259 (21%)

Query: 2   MDREGLLSRNVSQEDA-DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LF 59
           +D   LL  NV   D  DIS ++     +  G  +    ++ FI   K R      V L 
Sbjct: 330 LDWMTLLPWNVYTNDNFDISKVKEILDRDHYGLKDIKEMIQTFIAVGKLRGSIGGKVILL 389

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA----------------ALLTNL 103
           VGPPG GKT++ + +A  LG  F   S   ++   ++                 AL T  
Sbjct: 390 VGPPGTGKTSVGKSIANALGRQFHRISVGGLSDVSEIKGHRRTYVASMPGKIIQALKTVK 449

Query: 104 EDRDVLFIDEIHRLSIIVE--------EILYPAME----DFQLDLMVGEGPSARSVKINL 151
               V+ IDEI ++S   +        E+L P       D+ LD           V  +L
Sbjct: 450 TSNPVILIDEIDKISRSSQGDPNSALLEVLDPQQNKNFVDYYLD-----------VPYDL 498

Query: 152 SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR----------GAKLTGL 201
           SR   I        +  PL DR  + + LN Y   +   I +R          G     L
Sbjct: 499 SRVLFICTANDADSIPAPLLDRMEV-MTLNGYIQSEQMEIAKRYLLPLVRKETGISEEQL 557

Query: 202 AVTDEAA---CEIAMRSRG 217
             T EA    CE+  R  G
Sbjct: 558 QFTPEAIKKLCELYCREAG 576


>gi|56808854|ref|ZP_00366565.1| COG0465: ATP-dependent Zn proteases [Streptococcus pyogenes M49
           591]
          Length = 364

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLE--DRDV 108
           VL  GPPG GKT LA+ VA E GV F S SG       V   A  + +L  + +  +R +
Sbjct: 205 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRSLFEDAKKAERAI 264

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 265 IFIDEI 270


>gi|226309710|ref|YP_002769604.1| cell division protein FtsH homolog [Brevibacillus brevis NBRC
           100599]
 gi|226092658|dbj|BAH41100.1| cell division protein FtsH homolog [Brevibacillus brevis NBRC
           100599]
          Length = 648

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 205 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 264

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 265 IFIDEI 270


>gi|170108166|ref|XP_001885292.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164639768|gb|EDR04037.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 770

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 32/70 (45%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALL--TNLEDRDV---- 108
           VL  GPPG GKT LA  +A ELGV F S S P I    +G+    L  T  E + V    
Sbjct: 159 VLLHGPPGCGKTLLANAMAGELGVPFISISAPSIVSGMSGESEKTLRDTFEEAKRVAPCL 218

Query: 109 LFIDEIHRLS 118
           LFIDEI  ++
Sbjct: 219 LFIDEIDAIT 228



 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 21/37 (56%), Positives = 22/37 (59%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           EA   VL  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 494 EAACGVLLWGPPGCGKTLLAKAVANESRANFISVKGP 530


>gi|121719320|ref|XP_001276359.1| DNA replication factor C subunit Rfc3, putative [Aspergillus
           clavatus NRRL 1]
 gi|119404557|gb|EAW14933.1| DNA replication factor C subunit Rfc3, putative [Aspergillus
           clavatus NRRL 1]
          Length = 395

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 5/56 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           RP TL++ +G  +  + +  F+EA +     L H+L  GPPG GKT+    +AR +
Sbjct: 52  RPNTLDDVSGHQDILTTINKFVEANR-----LPHLLLYGPPGTGKTSTILALARRI 102


>gi|154248843|ref|YP_001409668.1| recombination factor protein RarA [Fervidobacterium nodosum
           Rt17-B1]
 gi|154152779|gb|ABS60011.1| AAA ATPase central domain protein [Fervidobacterium nodosum
           Rt17-B1]
          Length = 378

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 84/203 (41%), Gaps = 34/203 (16%)

Query: 58  LFVGPPGLGKTTLAQVVARE-----LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID 112
           +  GPPG GKT++  ++ +      + +N   TS   I K    A  +  +++  +LFID
Sbjct: 14  ILAGPPGTGKTSVLNLIKKYTDYEIVQLNAAFTSVEDIKKWEKYAYNMKGIKNI-LLFID 72

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV--GLLTNPL 170
           EIHR +   +++  P +E                       +TL   TT     +L   L
Sbjct: 73  EIHRFNKKQQDVFLPGVET--------------------GIYTLYGTTTESPQHVLNPAL 112

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
             R  + +R      +DL+ I+++     G+ VT+     I   S G  R    L+    
Sbjct: 113 LSRCRV-LRFKKLSEKDLRIILEKAISYVGMEVTENVKDMIIRSSNGDARF---LINTYE 168

Query: 231 DFAEVAHAKTITREIADAALLRL 253
             + +  AKTI + + D  + ++
Sbjct: 169 ILSNI--AKTIGKNLIDEEIFKM 189


>gi|53136688|emb|CAG32673.1| hypothetical protein RCJMB04_32h3 [Gallus gallus]
          Length = 582

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 32/68 (47%), Gaps = 10/68 (14%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP----------VIAKAGDLAALLTNLEDR 106
            L  GPPGLGKTTLA V+AR  G N    +             I  A  + ++L   E  
Sbjct: 354 ALLCGPPGLGKTTLAHVIARHAGYNVVEMNASDDRSPETFRIRIEAATQMKSVLGAEEKP 413

Query: 107 DVLFIDEI 114
           + L IDEI
Sbjct: 414 NCLIIDEI 421


>gi|66809699|ref|XP_638572.1| AAA ATPase domain-containing protein [Dictyostelium discoideum AX4]
 gi|74996892|sp|Q54PT2|VPS4_DICDI RecName: Full=Vacuolar protein sorting-associated protein 4
 gi|60467188|gb|EAL65222.1| AAA ATPase domain-containing protein [Dictyostelium discoideum AX4]
          Length = 444

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTS-GPVIAKA-GDLAALLTNL------EDRDV 108
           +L  GPPG GK+ LA+ VA E+   F S S   ++ K  GD   L+  L      ++  V
Sbjct: 171 ILLYGPPGTGKSYLAKAVATEISSTFFSISPSDIVTKWLGDSEKLVKQLFEMAREKNNSV 230

Query: 109 LFIDEIHRL 117
           +FIDE+  L
Sbjct: 231 IFIDEVDSL 239


>gi|325128438|gb|EGC51319.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           meningitidis N1568]
          Length = 414

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +AR+L V F       + +AG    D+  ++T L        
Sbjct: 114 NILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDV 173

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 174 EKAQRGIVYIDEIDKIS 190


>gi|284162219|ref|YP_003400842.1| ATPase AAA [Archaeoglobus profundus DSM 5631]
 gi|284012216|gb|ADB58169.1| AAA family ATPase, CDC48 subfamily [Archaeoglobus profundus DSM
           5631]
          Length = 801

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DV 108
           VL  GPPG GKT +A+ VA E+G +F + +GP I     G+    L  + +        +
Sbjct: 228 VLLYGPPGTGKTLIAKAVANEIGASFFTINGPEIMSKYYGESEQRLREIFEEAKENAPSI 287

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 288 IFIDEIDAIA 297



 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT +A+ VA E   NF S  GP
Sbjct: 565 VLLYGPPGTGKTLIAKAVANEANANFISVKGP 596


>gi|256027041|ref|ZP_05440875.1| DNA polymerase III subunits gamma and tau [Fusobacterium sp. D11]
 gi|289765024|ref|ZP_06524402.1| DNA polymerase III subunit gamma/tau [Fusobacterium sp. D11]
 gi|289716579|gb|EFD80591.1| DNA polymerase III subunit gamma/tau [Fusobacterium sp. D11]
          Length = 482

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 112/248 (45%), Gaps = 35/248 (14%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP +  E +G+ E   +LK+ ++  K+ A A    LF GP G+GKTT+A+++A+  GVN 
Sbjct: 10  RPSSFSEVSGENEIVKSLKLSLKN-KSMAHAY---LFSGPRGVGKTTIARLIAK--GVNC 63

Query: 83  RS--TSGPVIAKAGDLAAL-------LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
            +   +G    +  +  A+       L  ++      IDEI  L    E+I Y  +E  +
Sbjct: 64  LNLKENGEPCNECKNCKAINEGRFSDLIEIDAASNRSIDEIRSLK---EKINYQPVEGLK 120

Query: 134 LDLMVGEGPSARSVKINLSRFTL---------IAATTRVGLLTNPLQDRFGIPIRLNF-- 182
              ++ E         N    TL         I ATT +  +   +  R     R +F  
Sbjct: 121 KVYIIDEAHMLTKEAFNALLKTLEEPPAHVIFILATTELEKILPTIISRCQ---RYDFKP 177

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            ++E++K+ ++   K   L++TD+    I   S G+ R +  +L R+      A+ K I 
Sbjct: 178 LDLEEMKSGLEHILKEENLSMTDDVYPVIYENSSGSMRDSISILERL---IVTANGKEIN 234

Query: 243 REIADAAL 250
            +IA+  L
Sbjct: 235 LKIAEDTL 242


>gi|242091595|ref|XP_002441630.1| hypothetical protein SORBIDRAFT_09g030660 [Sorghum bicolor]
 gi|241946915|gb|EES20060.1| hypothetical protein SORBIDRAFT_09g030660 [Sorghum bicolor]
          Length = 771

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ +A E GV F S SG       V   A  +  L    + R   +
Sbjct: 299 VLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFNAAKKRSPCI 358

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 359 IFIDEI 364


>gi|303319413|ref|XP_003069706.1| Activator 1 subunit 3 , putative [Coccidioides posadasii C735 delta
           SOWgp]
 gi|240109392|gb|EER27561.1| Activator 1 subunit 3 , putative [Coccidioides posadasii C735 delta
           SOWgp]
          Length = 398

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 5/56 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           RP TL++ +G  +  + +  FIE+ +     L H+L  GPPG GKT+    +AR++
Sbjct: 50  RPSTLDDVSGHQDIIATINRFIESNR-----LPHLLLYGPPGTGKTSTILALARQI 100


>gi|238882313|gb|EEQ45951.1| peroxisomal biogenesis factor 6 [Candida albicans WO-1]
          Length = 1147

 Score = 42.0 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/32 (53%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +LF GPPG GKT LA+ +A    +NF S  GP
Sbjct: 849 ILFYGPPGTGKTLLAKAIATNFSLNFFSVKGP 880


>gi|158338030|ref|YP_001519206.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris
           marina MBIC11017]
 gi|158308271|gb|ABW29888.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris
           marina MBIC11017]
          Length = 631

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 15/104 (14%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKAR-------AEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  E+ + L+  +E  K+        A+    VL VGPPG GKT +A+ VA E 
Sbjct: 168 TFDDVAGVEESKTELEEIVEFLKSPQRFTEIGAKIPKGVLLVGPPGTGKTLMAKAVAGEA 227

Query: 79  GVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEI 114
           GV F S SG    +   G  AA + +L ++       ++FIDE+
Sbjct: 228 GVPFFSISGSEFVELFVGTGAARVRDLFEQAKKKAPCIIFIDEL 271


>gi|125526519|gb|EAY74633.1| hypothetical protein OsI_02522 [Oryza sativa Indica Group]
          Length = 709

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 259 VLLVGPPGTGKTMLARAVAGEAGVPFFSCSG 289


>gi|68482222|ref|XP_714995.1| likely peroxisomal biogenesis AAA ATPase Pex6 [Candida albicans
           SC5314]
 gi|68482349|ref|XP_714932.1| likely peroxisomal biogenesis AAA ATPase Pex6 [Candida albicans
           SC5314]
 gi|46436531|gb|EAK95892.1| likely peroxisomal biogenesis AAA ATPase Pex6 [Candida albicans
           SC5314]
 gi|46436596|gb|EAK95956.1| likely peroxisomal biogenesis AAA ATPase Pex6 [Candida albicans
           SC5314]
          Length = 1157

 Score = 42.0 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/32 (53%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +LF GPPG GKT LA+ +A    +NF S  GP
Sbjct: 851 ILFYGPPGTGKTLLAKAIATNFSLNFFSVKGP 882


>gi|332186790|ref|ZP_08388532.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sphingomonas
           sp. S17]
 gi|332013123|gb|EGI55186.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sphingomonas
           sp. S17]
          Length = 420

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L VGP G GKT LAQ +AR L V F       + +AG +   + N+         
Sbjct: 108 AKSNILLVGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASD 167

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDEI ++S
Sbjct: 168 YNVERAQRGIVYIDEIDKIS 187


>gi|325264757|ref|ZP_08131486.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           sp. D5]
 gi|324030049|gb|EGB91335.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           sp. D5]
          Length = 423

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 56/129 (43%), Gaps = 28/129 (21%)

Query: 18  DISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEA---------LDHVLFVGPP 63
           DI+LL P  ++ F      GQ EA   L V +     R  A           ++L +GP 
Sbjct: 60  DINLLTPEEIKAFLDEYVIGQDEAKKVLSVAVYNHYKRIMAEQDLGVELQKSNILMLGPT 119

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------------EDRDVL 109
           G GKT LAQ +AR L V F       + +AG +   + N+               +  ++
Sbjct: 120 GCGKTLLAQTLARILNVPFAIADATALTEAGYVGEDVENILLKVIQAADGDIERAEHGII 179

Query: 110 FIDEIHRLS 118
           +IDEI +++
Sbjct: 180 YIDEIDKIT 188


>gi|308389490|gb|ADO31810.1| ATP-dependent Clp protease ATP-binding subunit [Neisseria
           meningitidis alpha710]
          Length = 414

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +AR+L V F       + +AG    D+  ++T L        
Sbjct: 114 NILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDV 173

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 174 EKAQRGIVYIDEIDKIS 190


>gi|229542261|ref|ZP_04431321.1| ATP-dependent metalloprotease FtsH [Bacillus coagulans 36D1]
 gi|229326681|gb|EEN92356.1| ATP-dependent metalloprotease FtsH [Bacillus coagulans 36D1]
          Length = 670

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 257

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 258 IFIDEI 263


>gi|156742524|ref|YP_001432653.1| ATP-dependent protease La [Roseiflexus castenholzii DSM 13941]
 gi|302425070|sp|A7NM80|LON_ROSCS RecName: Full=Lon protease; AltName: Full=ATP-dependent protease La
 gi|156233852|gb|ABU58635.1| ATP-dependent protease La [Roseiflexus castenholzii DSM 13941]
          Length = 802

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 85/221 (38%), Gaps = 55/221 (24%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA---GDLAALLTNLEDR------ 106
           + FVGPPG+GKT+L   +AR LG  F R   G V  +A   G     +  L  R      
Sbjct: 359 LCFVGPPGVGKTSLGTSIARALGRKFVRVALGGVRDEAEIRGHRRTYIGALPGRIIQGIN 418

Query: 107 ------DVLFIDEIHRLSIIVE--------EILYP----AMEDFQLDLMVGEGPSARSVK 148
                  V  +DE+ +LS+  +        E+L P    A  D  LD           V 
Sbjct: 419 RAGSNNPVFMLDEVDKLSVGFQGDPAAALLEVLDPEQNVAFVDRYLD-----------VP 467

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL----KTIVQRGAKLTGLAVT 204
            +LSR   I    R   +   L DR  +     + E+E L    + ++QR     GLA  
Sbjct: 468 FDLSRALFICTANRSDTIPPALLDRMELLELAGYTEMEKLEICRRYLIQRQRNEQGLAER 527

Query: 205 DEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
                E A+R            R +R++   A  + + R I
Sbjct: 528 APTITEAALR------------RLIREYTHEAGVRDLERRI 556


>gi|116871603|ref|YP_848384.1| cell division ATP-dependent metalloprotease FtsH [Listeria
           welshimeri serovar 6b str. SLCC5334]
 gi|116740481|emb|CAK19601.1| cell division ATP-dependent metalloprotease FtsH [Listeria
           welshimeri serovar 6b str. SLCC5334]
          Length = 691

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 216 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 275

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 276 IFIDEI 281


>gi|169609180|ref|XP_001798009.1| hypothetical protein SNOG_07677 [Phaeosphaeria nodorum SN15]
 gi|111064023|gb|EAT85143.1| hypothetical protein SNOG_07677 [Phaeosphaeria nodorum SN15]
          Length = 550

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 68/148 (45%), Gaps = 18/148 (12%)

Query: 22  LRPRTLEEFTGQVEACSN--LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +RP +L++  GQ     N  L+  +   K     L  ++  G PG GKTT+A+++A   G
Sbjct: 138 MRPTSLDDVCGQELVGPNGILRGMVNEGK-----LPSLVLWGRPGTGKTTIARLIANTSG 192

Query: 80  VNF---RSTSGP---VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             F    STS     V    G+ A  L     + ++F DE+HR S   ++     +E   
Sbjct: 193 ARFVEINSTSTKLEEVRKIFGEAARDLQLTGRKTIVFCDELHRFSKTQQDAFLGPVESGI 252

Query: 134 LDLMVG--EGPSARSVKINLSR---FTL 156
           + L+    E PS + +   LSR   FTL
Sbjct: 253 ITLIAATTENPSFKVISALLSRCRTFTL 280


>gi|91783911|ref|YP_559117.1| FtsH-2 peptidase [Burkholderia xenovorans LB400]
 gi|91687865|gb|ABE31065.1| membrane protease FtsH catalytic subunit [Burkholderia xenovorans
           LB400]
          Length = 659

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 79/271 (29%), Positives = 117/271 (43%), Gaps = 45/271 (16%)

Query: 26  TLEEFTGQVEACSNLKVFIE----AAKAR---AEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  EA + LK  +E    A + R    +    VL VG PG GKT LA+ VA E 
Sbjct: 168 TFDDIAGIDEAKAELKQIVEFLRNAERYRRLGGKIPKGVLIVGAPGTGKTLLAKAVAGEA 227

Query: 79  GVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG    +   G  AA + +L ++       ++FIDE+  L  +    +    +
Sbjct: 228 GVPFFSISGSAFVEMFVGVGAARVRDLFEQAQKKAPCIVFIDELDALGKVRGAGVTSGND 287

Query: 131 DFQLDL------MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPL--QDRFGIPIRLNF 182
           + +  L      M G  P+        S   ++AAT R  +L   L    RF   I ++ 
Sbjct: 288 EREQTLNQLLVEMDGFQPN--------SGVIILAATNRPEILDPALLRPGRFDRHIAIDR 339

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            ++   + I+Q   K   LA  D    EIA R   TP  AG  L  V + A + HA    
Sbjct: 340 PDLNGRRQILQVHVKKVTLA-ADVDLAEIASR---TPGFAGADLANVVNEAAL-HA---- 390

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIAR 273
                A L + A+  + FD+   R +T + R
Sbjct: 391 -----AELDKSAVGMVDFDEAIDRAMTGMER 416


>gi|325204365|gb|ADY99818.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           meningitidis M01-240355]
          Length = 414

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +AR+L V F       + +AG    D+  ++T L        
Sbjct: 114 NILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDV 173

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 174 EKAQRGIVYIDEIDKIS 190


>gi|325136470|gb|EGC59076.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           meningitidis M0579]
          Length = 414

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +AR+L V F       + +AG    D+  ++T L        
Sbjct: 114 NILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDV 173

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 174 EKAQRGIVYIDEIDKIS 190


>gi|322505367|emb|CAM40398.2| AAA family ATPase-like protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 944

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDRD------V 108
           VL  GPPG  KT LA+ +A E  +NF S  GP V +K  GD    + ++ DR       V
Sbjct: 712 VLLYGPPGCSKTMLAKALANESRMNFISVKGPEVFSKWVGDSEKAVRDIFDRARAASPCV 771

Query: 109 LFIDEI 114
           +FIDE+
Sbjct: 772 VFIDEL 777


>gi|313668518|ref|YP_004048802.1| ATP-dependent Clp protease ATP-binding subunit [Neisseria lactamica
           ST-640]
 gi|313005980|emb|CBN87437.1| ATP-dependent Clp protease ATP-binding subunit [Neisseria lactamica
           020-06]
          Length = 414

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +AR+L V F       + +AG    D+  ++T L        
Sbjct: 114 NILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDV 173

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 174 EKAQRGIVYIDEIDKIS 190


>gi|270290205|ref|ZP_06196431.1| cell division protease FtsH [Pediococcus acidilactici 7_4]
 gi|304385526|ref|ZP_07367870.1| cell division protein FtsH [Pediococcus acidilactici DSM 20284]
 gi|270281742|gb|EFA27574.1| cell division protease FtsH [Pediococcus acidilactici 7_4]
 gi|304328030|gb|EFL95252.1| cell division protein FtsH [Pediococcus acidilactici DSM 20284]
          Length = 694

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           VL  GPPG GKT LA+ VA E GV F S SG    +   G  A+ + +L D+       +
Sbjct: 224 VLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFDQAKKNAPSI 283

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 284 IFIDEI 289


>gi|254672175|emb|CBA05020.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           meningitidis alpha275]
          Length = 414

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +AR+L V F       + +AG    D+  ++T L        
Sbjct: 114 NILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDV 173

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 174 EKAQRGIVYIDEIDKIS 190


>gi|254670021|emb|CBA04788.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           meningitidis alpha153]
          Length = 376

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +AR+L V F       + +AG    D+  ++T L        
Sbjct: 114 NILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDV 173

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 174 EKAQRGIVYIDEIDKIS 190


>gi|254805167|ref|YP_003083388.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           meningitidis alpha14]
 gi|254668709|emb|CBA06486.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           meningitidis alpha14]
          Length = 414

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +AR+L V F       + +AG    D+  ++T L        
Sbjct: 114 NILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDV 173

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 174 EKAQRGIVYIDEIDKIS 190


>gi|256071912|ref|XP_002572282.1| PIM1 peptidase (S16 family) [Schistosoma mansoni]
 gi|238657437|emb|CAZ28513.1| PIM1 peptidase (S16 family) [Schistosoma mansoni]
          Length = 1036

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 87/208 (41%), Gaps = 33/208 (15%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTL 70
            S+E  DI   +    E+  G  +    +  FI  ++ +      +L F GPPG+GKT++
Sbjct: 512 TSEEHLDIGQAKKILDEDHYGMDDVKKRILEFIAVSQLKGSTQGKILCFCGPPGVGKTSI 571

Query: 71  AQVVARELGVN-FRSTSGP--------------VIAKAGDLAALLTNLEDRD-VLFIDEI 114
           A  +AR L    FR + G               V A  G +   L   +  + ++ IDEI
Sbjct: 572 ANSIARALNRKYFRFSVGGMSDVSEIKGHRRTYVGAMPGKIIQCLKKTKTENPLILIDEI 631

Query: 115 HRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
            +L        +  + E+L P      LD  +        V ++LSR   I    ++  +
Sbjct: 632 DKLGRGWQGDPASALLELLDPEQNANFLDHYL-------DVTVDLSRVLFITTANQLDTI 684

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
             PL+DR  + I ++ Y  E+   I +R
Sbjct: 685 PEPLRDRMEV-IEVSGYVEEEKLAIAKR 711


>gi|269120918|ref|YP_003309095.1| ATP-dependent protease La [Sebaldella termitidis ATCC 33386]
 gi|268614796|gb|ACZ09164.1| ATP-dependent protease La [Sebaldella termitidis ATCC 33386]
          Length = 769

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 99/235 (42%), Gaps = 48/235 (20%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           +  VGPPG+GKT+LA  VAR +   F R + G V  +A              G + + L 
Sbjct: 347 ICLVGPPGVGKTSLAHSVARAMDRKFVRISLGGVRDEAEIRGHRRTYIGSMPGRIISALK 406

Query: 102 NLE-DRDVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152
            +  +  V+  DEI ++        S  + E+L PA  +   D  V + P       +LS
Sbjct: 407 QIGVNNPVMLFDEIDKMASDFRGDPSSAMLEVLDPAQNNTFEDHYV-DAP------FDLS 459

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL---------KTIVQRGAKLTGLAV 203
           +   I     +G +  PL+DR  I    ++ E E L         +T  + G K   +  
Sbjct: 460 KVFFITTANDLGGIPGPLRDRMEIIYIESYTEFEKLNIAKKYLIPQTQEENGLKDYKVDF 519

Query: 204 TDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA-KTITREIADAALLRLAIDK 257
            DEA  +I   +  T     R LRR     E++   + + +E+ D    ++ I+K
Sbjct: 520 DDEAIFKII--NEYTREAGVRNLRR-----EISKVFRKVAKEVVDKRKAKIVINK 567


>gi|254520537|ref|ZP_05132593.1| ATP-dependent metalloprotease FtsH [Clostridium sp. 7_2_43FAA]
 gi|226914286|gb|EEH99487.1| ATP-dependent metalloprotease FtsH [Clostridium sp. 7_2_43FAA]
          Length = 600

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 194 VLLVGPPGTGKTLLAKAIAGEAGVPFYSISG 224


>gi|145592539|ref|YP_001154541.1| AAA family ATPase, CDC48 subfamily protein [Pyrobaculum arsenaticum
           DSM 13514]
 gi|145284307|gb|ABP51889.1| AAA family ATPase, CDC48 subfamily [Pyrobaculum arsenaticum DSM
           13514]
          Length = 731

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLAALLTNLEDR------DV 108
           +L  GPPG GKT LA+ VA E G NF +  GP I     G+   ++  +  +       V
Sbjct: 491 ILLFGPPGTGKTLLAKAVATESGANFIAVRGPEIFSKWVGESEKMVREIFRKARMAAPAV 550

Query: 109 LFIDEIHRLS 118
           +FIDEI  L+
Sbjct: 551 VFIDEIDALA 560



 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 8/76 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DV 108
           +L +GPPG GKT LA+ VA E    F + +GP I     G+  A L  + +        +
Sbjct: 216 ILLIGPPGTGKTLLAKAVANEANAYFVAINGPEIMSKYYGESEARLREIFEEAKKNAPAI 275

Query: 109 LFIDEIHRLSIIVEEI 124
           +FIDEI  ++   EE+
Sbjct: 276 IFIDEIDAIAPKREEV 291


>gi|18312110|ref|NP_558777.1| AAA family ATPase, CDC48 subfamily protein [Pyrobaculum aerophilum
           str. IM2]
 gi|18159541|gb|AAL62959.1| AAA family ATPase, possible cell division control protein cdc48
           [Pyrobaculum aerophilum str. IM2]
          Length = 731

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLAALLTNLEDR------DV 108
           +L  GPPG GKT LA+ VA E G NF +  GP I     G+   ++  +  +       V
Sbjct: 491 ILLFGPPGTGKTLLAKAVATESGANFIAVRGPEIFSKWVGESEKMVREIFRKARMAAPAV 550

Query: 109 LFIDEIHRLS 118
           +FIDEI  L+
Sbjct: 551 VFIDEIDALA 560



 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 16/115 (13%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
           T E+     +A   ++  +E      E   H        +L +GPPG GKT LA+ VA E
Sbjct: 177 TWEDIGDLEDAKQKIRELVELPLRHPELFKHLGIEPPKGILLIGPPGTGKTLLAKAVANE 236

Query: 78  LGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DVLFIDEIHRLSIIVEEI 124
               F + +GP I     G+  A L  + +        ++FIDEI  ++   EE+
Sbjct: 237 ANAYFVAINGPEIMSKYYGESEARLREIFEEAKKNAPAIIFIDEIDAIAPKREEV 291


>gi|16802266|ref|NP_463751.1| hypothetical protein lmo0220 [Listeria monocytogenes EGD-e]
 gi|224500329|ref|ZP_03668678.1| hypothetical protein LmonF1_11934 [Listeria monocytogenes Finland
           1988]
 gi|224503460|ref|ZP_03671767.1| hypothetical protein LmonFR_13282 [Listeria monocytogenes FSL
           R2-561]
 gi|254829311|ref|ZP_05233998.1| ftsH [Listeria monocytogenes FSL N3-165]
 gi|254832459|ref|ZP_05237114.1| hypothetical protein Lmon1_13976 [Listeria monocytogenes 10403S]
 gi|255028436|ref|ZP_05300387.1| hypothetical protein LmonL_03016 [Listeria monocytogenes LO28]
 gi|284803041|ref|YP_003414906.1| hypothetical protein LM5578_2798 [Listeria monocytogenes 08-5578]
 gi|284996182|ref|YP_003417950.1| hypothetical protein LM5923_2747 [Listeria monocytogenes 08-5923]
 gi|16409585|emb|CAD00747.1| ftsH [Listeria monocytogenes EGD-e]
 gi|258601724|gb|EEW15049.1| ftsH [Listeria monocytogenes FSL N3-165]
 gi|284058603|gb|ADB69544.1| hypothetical protein LM5578_2798 [Listeria monocytogenes 08-5578]
 gi|284061649|gb|ADB72588.1| hypothetical protein LM5923_2747 [Listeria monocytogenes 08-5923]
          Length = 691

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 216 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 275

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 276 IFIDEI 281


>gi|319410635|emb|CBY91004.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Neisseria
           meningitidis WUE 2594]
          Length = 414

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +AR+L V F       + +AG    D+  ++T L        
Sbjct: 114 NILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDV 173

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 174 EKAQRGIVYIDEIDKIS 190


>gi|167521884|ref|XP_001745280.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163776238|gb|EDQ89858.1| predicted protein [Monosiga brevicollis MX1]
          Length = 683

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 60/259 (23%), Positives = 103/259 (39%), Gaps = 52/259 (20%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNF---- 82
           E+  G  +    +  FI   K R      +L F GPPG+GKT++A+ +AR L   +    
Sbjct: 212 EDHYGMKDVKDRVLEFIAVGKLRNSMHGKILTFSGPPGVGKTSIAKSIARALNREYYRFS 271

Query: 83  --------------RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE------ 122
                         R+  G +  K   +  L T      ++ +DE+ ++   V       
Sbjct: 272 VGGLHDVAEIKGHRRTYVGAMPGKP--IQCLKTTGTQNPLILLDEVDKIGRGVHGDPTSS 329

Query: 123 --EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
             E+L PA     LD  +        V ++LS+   I     +  +  PL DR  I I+L
Sbjct: 330 LLELLDPAQNSGFLDHYL-------DVPVDLSKVLFICTANVLDTIPGPLLDRMEI-IQL 381

Query: 181 NFYEIEDLKTIVQR----------GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
           + Y  ++ + I ++          G     L +TDEA   + + +R   R +G  +R + 
Sbjct: 382 SGYMADEKRAIAKQYLIPEAQKTSGVTAEQLEITDEA---LDVLNRAYCRESG--VRNLE 436

Query: 231 DFAEVAHAKTITREIADAA 249
              +  H K   + + D A
Sbjct: 437 KHIDKIHRKAALKLVRDNA 455


>gi|254303476|ref|ZP_04970834.1| possible AAA family ATPase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148323668|gb|EDK88918.1| possible AAA family ATPase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 369

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 90/228 (39%), Gaps = 66/228 (28%)

Query: 56  HVLFVGPPGLGKTTLAQVVAR-------------------ELGVNFRSTSGPVIAKAGDL 96
           H+ FVG PG GKTT+A++V R                   +L   ++  +   + K  DL
Sbjct: 144 HLAFVGNPGTGKTTVARIVGRIYKRIGLLSKGHFVEVSRTDLIAGYQGQTALKVKKVIDL 203

Query: 97  AALLTNLEDRDVLFIDEIHRLS-----------IIVEEILYPAMEDFQLDLMVGEGPSAR 145
           A          VLFIDE + ++            + E  L  A+ED++ DL+V       
Sbjct: 204 AK-------GGVLFIDEAYSITENDHSDSYGKECLTE--LTKALEDYRGDLVV------- 247

Query: 146 SVKINLSRFTLIAATT---RVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
                     ++A  T        +NP L+ RF   I  + Y  ++L  I+    K    
Sbjct: 248 ----------IVAGYTEPMNKFFESNPGLKSRFNTFIEFDDYNSDELDKILISMCKNNDY 297

Query: 202 AVTDEAACEIAMRSRGTPRIA------GRLLRRVRDFAEVAHAKTITR 243
            + +EA  +I +       +       GRL+R + D   + HAK + +
Sbjct: 298 TLEEEAKEKIHLYFEKQITLKDKNFANGRLVRNLYDDLVMNHAKRVIK 345


>gi|139439224|ref|ZP_01772666.1| Hypothetical protein COLAER_01680 [Collinsella aerofaciens ATCC
           25986]
 gi|133775248|gb|EBA39068.1| Hypothetical protein COLAER_01680 [Collinsella aerofaciens ATCC
           25986]
          Length = 712

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 228 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 258


>gi|116493273|ref|YP_805008.1| FtsH-2 peptidase [Pediococcus pentosaceus ATCC 25745]
 gi|116103423|gb|ABJ68566.1| membrane protease FtsH catalytic subunit [Pediococcus pentosaceus
           ATCC 25745]
          Length = 693

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           VL  GPPG GKT LA+ VA E GV F S SG    +   G  A+ + +L D+       +
Sbjct: 224 VLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFDQAKKNAPSI 283

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 284 IFIDEI 289


>gi|1669371|gb|AAB46346.1| ATPase; strong similarity to peroxisome biosynthesis protein PAS1
           (PID:g1172019); coded for by human cDNA C04279
           (NID:g1467530) [Homo sapiens]
          Length = 541

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT LA V+ARE  +NF S  GP
Sbjct: 190 ILLYGPPGTGKTLLAGVIARESRMNFISVKGP 221


>gi|15677237|ref|NP_274390.1| ATP-dependent protease ATP-binding subunit [Neisseria meningitidis
           MC58]
 gi|21263485|sp|Q9JYY3|CLPX_NEIMB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|7226618|gb|AAF41746.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           meningitidis MC58]
 gi|316984186|gb|EFV63164.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           meningitidis H44/76]
 gi|325134392|gb|EGC57037.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           meningitidis M13399]
 gi|325140408|gb|EGC62929.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           meningitidis CU385]
 gi|325200007|gb|ADY95462.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           meningitidis H44/76]
 gi|325201919|gb|ADY97373.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           meningitidis M01-240149]
 gi|325205861|gb|ADZ01314.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           meningitidis M04-240196]
 gi|325208330|gb|ADZ03782.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           meningitidis NZ-05/33]
          Length = 414

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +AR+L V F       + +AG    D+  ++T L        
Sbjct: 114 NILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDV 173

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 174 EKAQRGIVYIDEIDKIS 190


>gi|16799329|ref|NP_469597.1| hypothetical protein lin0252 [Listeria innocua Clip11262]
 gi|16412681|emb|CAC95485.1| ftsH [Listeria innocua Clip11262]
          Length = 690

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 216 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 275

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 276 IFIDEI 281


>gi|304387303|ref|ZP_07369496.1| ATP-dependent Clp protease ATP-binding subunit [Neisseria
           meningitidis ATCC 13091]
 gi|304338686|gb|EFM04803.1| ATP-dependent Clp protease ATP-binding subunit [Neisseria
           meningitidis ATCC 13091]
          Length = 414

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +AR+L V F       + +AG    D+  ++T L        
Sbjct: 114 NILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDV 173

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 174 EKAQRGIVYIDEIDKIS 190


>gi|297250255|ref|ZP_06863929.2| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           polysaccharea ATCC 43768]
 gi|296839417|gb|EFH23355.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           polysaccharea ATCC 43768]
          Length = 394

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +AR+L V F       + +AG    D+  ++T L        
Sbjct: 94  NILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDV 153

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 154 EKAQRGIVYIDEIDKIS 170


>gi|291520851|emb|CBK79144.1| ATP-dependent metalloprotease FtsH [Coprococcus catus GD/7]
          Length = 677

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 7/69 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIE-------AAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ E+  +L+  ++         K  A+     L VGPPG GKT LA+ VA E 
Sbjct: 178 TFQDVAGQEESKESLREIVDFLHNPEKYTKIGAKLPKGALLVGPPGTGKTLLAKAVAGEA 237

Query: 79  GVNFRSTSG 87
           GV F S SG
Sbjct: 238 GVPFFSLSG 246


>gi|289620609|emb|CBI52970.1| unnamed protein product [Sordaria macrospora]
          Length = 387

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 5/60 (8%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          +   RP+TL + T Q    + L+  ++A       L H+LF GPPG GKT+    +A+EL
Sbjct: 35 VEKYRPKTLSDVTAQDHTITVLQRTLQATN-----LPHMLFYGPPGTGKTSTILALAKEL 89


>gi|297724619|ref|NP_001174673.1| Os06g0229066 [Oryza sativa Japonica Group]
 gi|255676855|dbj|BAH93401.1| Os06g0229066 [Oryza sativa Japonica Group]
          Length = 486

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 38/66 (57%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL VGPPG GKT LA+ +A E GV F S SG    +   G  A+ + +L DR       +
Sbjct: 252 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMFVGVGASRVRDLFDRAKASAPCL 311

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 312 VFIDEI 317


>gi|290894272|ref|ZP_06557239.1| ftsH protein [Listeria monocytogenes FSL J2-071]
 gi|290556156|gb|EFD89703.1| ftsH protein [Listeria monocytogenes FSL J2-071]
          Length = 690

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 216 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 275

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 276 IFIDEI 281


>gi|242399369|ref|YP_002994793.1| Pk-cdcA protein [Thermococcus sibiricus MM 739]
 gi|242265762|gb|ACS90444.1| Pk-cdcA protein [Thermococcus sibiricus MM 739]
          Length = 839

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 16/115 (13%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
           T E+  G  +A   ++  +E      E  +         VL  GPPG GKT LA+ VA E
Sbjct: 211 TYEDIGGLKDAVQKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANE 270

Query: 78  LGVNFRSTSGPVIAKA--GD----LAALLTNLEDR--DVLFIDEIHRLSIIVEEI 124
              +F + +GP I     G+    L  +    E+    ++FIDEI  ++   EE+
Sbjct: 271 ANAHFIAINGPEIMSKYYGESEERLRDIFKEAEENAPSIIFIDEIDAIAPKREEV 325



 Score = 37.7 bits (86), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 18/75 (24%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR---------- 106
           +L  GPPG GKT LA+ VA E   NF    GP +     L+  +   E R          
Sbjct: 585 ILLYGPPGTGKTLLAKAVANESEANFIGIRGPEV-----LSKWVGESEKRIREIFRKARQ 639

Query: 107 ---DVLFIDEIHRLS 118
               V+FIDE+  ++
Sbjct: 640 AAPTVVFIDEVDSIA 654


>gi|296120341|ref|YP_003628119.1| ATP-dependent metalloprotease FtsH [Planctomyces limnophilus DSM
           3776]
 gi|296012681|gb|ADG65920.1| ATP-dependent metalloprotease FtsH [Planctomyces limnophilus DSM
           3776]
          Length = 714

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 51/110 (46%), Gaps = 15/110 (13%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA--RAEALDH-----VLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  EA   L+  +E  K   + +AL       VL VGPPG GKT LA+ VA E 
Sbjct: 221 TFQDVAGIDEAVEELREVVEFLKTPEKYQALGGRIPRGVLLVGPPGTGKTLLAKAVAGEA 280

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSII 120
           GV F   SG       V   A  +  +     +R   ++FIDE+  L  +
Sbjct: 281 GVPFYGLSGSDFVEMFVGVGAARVRDMFQQAGERSPAIIFIDELDALGKV 330


>gi|212528130|ref|XP_002144222.1| AAA family ATPase/60S ribosome export protein Rix7, putative
           [Penicillium marneffei ATCC 18224]
 gi|210073620|gb|EEA27707.1| AAA family ATPase/60S ribosome export protein Rix7, putative
           [Penicillium marneffei ATCC 18224]
          Length = 741

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 35/72 (48%), Gaps = 3/72 (4%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           ADI  L     E  T  V+   N +++   AK    A   VL  GPPG GKT LA+ VA 
Sbjct: 481 ADIGALGGIRDELVTAVVDPIKNPEIY---AKVGITAPTGVLLWGPPGCGKTLLAKAVAN 537

Query: 77  ELGVNFRSTSGP 88
           E   NF S  GP
Sbjct: 538 ESRANFISIKGP 549



 Score = 40.0 bits (92), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 35/70 (50%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL  GPPG GKT LA   A +LGV F S S P I    +G+    L    D        +
Sbjct: 212 VLLHGPPGCGKTMLANAFAADLGVPFISISAPSIVSGMSGESEKALREHFDEAKKVAPCL 271

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 272 IFIDEIDAIT 281


>gi|161870243|ref|YP_001599413.1| ATP-dependent protease ATP-binding subunit ClpX [Neisseria
           meningitidis 053442]
 gi|189044141|sp|A9M020|CLPX_NEIM0 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|161595796|gb|ABX73456.1| ATP-dependent Clp protease ATP-binding subunit [Neisseria
           meningitidis 053442]
          Length = 414

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +AR+L V F       + +AG    D+  ++T L        
Sbjct: 114 NILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDV 173

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 174 EKAQRGIVYIDEIDKIS 190


>gi|156405290|ref|XP_001640665.1| predicted protein [Nematostella vectensis]
 gi|156227800|gb|EDO48602.1| predicted protein [Nematostella vectensis]
          Length = 675

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT +A+ VA E  +NF S  GP
Sbjct: 436 VLLYGPPGTGKTLMAKAVATECSLNFLSVKGP 467


>gi|153813437|ref|ZP_01966105.1| hypothetical protein RUMOBE_03857 [Ruminococcus obeum ATCC 29174]
 gi|149830458|gb|EDM85550.1| hypothetical protein RUMOBE_03857 [Ruminococcus obeum ATCC 29174]
          Length = 633

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 47/103 (45%), Gaps = 15/103 (14%)

Query: 27  LEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
             +  G+ EA  NL+  ++         K  A     VL VGPPG GKT LA+ VA E  
Sbjct: 165 FSDVAGEEEAKENLQEIVDYLHNPEKYTKVGASMPKGVLLVGPPGTGKTMLAKAVAGESN 224

Query: 80  VNFRSTSGPVIAK------AGDLAALLTNLEDRD--VLFIDEI 114
           V F S SG    +      A  +  L    +++   ++FIDEI
Sbjct: 225 VPFFSMSGSEFVEMFVGMGASKVRDLFKQAKEKAPCIVFIDEI 267


>gi|148657914|ref|YP_001278119.1| ATP-dependent protease La [Roseiflexus sp. RS-1]
 gi|148570024|gb|ABQ92169.1| ATP-dependent protease La [Roseiflexus sp. RS-1]
          Length = 783

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 99/218 (45%), Gaps = 47/218 (21%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA---GDLAALLTNLEDRDVLFID 112
           + FVGPPG+GKT+L + +AR LG  F R++ G +  +A   G     +  L  R +  + 
Sbjct: 357 LCFVGPPGVGKTSLGRSIARALGRKFVRTSLGGIRDEAEIRGHRRTYIGALPGRIIQGMK 416

Query: 113 EIH-RLSIIVEEILYPAMEDFQ-------LDLMVGEGPSARS-----VKINLSRFTLIAA 159
               R  + V + +    +DF+       L+++  E  +A S     +  +LS+   IA 
Sbjct: 417 TAKSRYPVYVLDEIDKVGQDFRGDPTSALLEVLDPEQNNAFSDHYLEIPFDLSQVVFIAT 476

Query: 160 TTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT------IVQRGAKLTGLA-----VTDEAA 208
             ++  + +PL+DR  I I +  Y  ED K       +V++  +  GL      +TD+A 
Sbjct: 477 ANQLDTIPSPLRDRMEI-IEIGGY-TEDEKLGIAQGFLVRKQREFHGLTPDQLIITDDA- 533

Query: 209 CEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
                           +++ VR++   A  + + REIA
Sbjct: 534 ----------------IIKLVREYTREAGVRNLEREIA 555


>gi|119182767|ref|XP_001242497.1| hypothetical protein CIMG_06393 [Coccidioides immitis RS]
          Length = 398

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 5/56 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           RP TL++ +G  +  + +  FIE+ +     L H+L  GPPG GKT+    +AR++
Sbjct: 50  RPSTLDDVSGHQDIIATINRFIESNR-----LPHLLLYGPPGTGKTSTILALARQI 100


>gi|19114380|ref|NP_593468.1| peroxin-6 (predicted) [Schizosaccharomyces pombe 972h-]
 gi|3219842|sp|O13764|PEX6_SCHPO RecName: Full=Peroxisomal ATPase pex6; AltName: Full=Peroxin-6;
           AltName: Full=Peroxisome biosynthesis protein pex6
 gi|2370473|emb|CAB11501.1| peroxin-6 (predicted) [Schizosaccharomyces pombe]
          Length = 948

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL  GPPG GKT LA+ VA EL + F S  GP +     G+  A + N+ ++       V
Sbjct: 691 VLLYGPPGTGKTLLAKAVATELSLEFVSIKGPELLNMYVGESEANVRNVFEKARNSSPCV 750

Query: 109 LFIDEIHRLS 118
           +F DE+  ++
Sbjct: 751 IFFDELDSIA 760


>gi|68477184|ref|XP_717385.1| hypothetical protein CaO19.522 [Candida albicans SC5314]
 gi|74590628|sp|Q5A6N1|LONM_CANAL RecName: Full=Lon protease homolog, mitochondrial; Flags: Precursor
 gi|46439094|gb|EAK98416.1| hypothetical protein CaO19.522 [Candida albicans SC5314]
          Length = 1078

 Score = 42.0 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 50/189 (26%), Positives = 75/189 (39%), Gaps = 38/189 (20%)

Query: 43  FIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNF-RSTSGP------------ 88
           FI   K        +L   GPPG GKT++A+ +A  L   + R   G             
Sbjct: 529 FISVGKISGNVDGKILCLAGPPGTGKTSIAKSIAEALNRKYTRIAVGGVQDVHDVKGHRR 588

Query: 89  --VIAKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVE--------EILYPAMEDFQLDLM 137
             V +  G +   LT  +  + ++ IDEI +L             EIL P   +  +D  
Sbjct: 589 TYVASIPGRIVTALTQAKTSNPLMLIDEIDKLDTTSHGGAARAFLEILDPEQNNSFVDNF 648

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR--- 194
           +        VK++LS+   +     +G +  PL+DR  I I +N Y   D   I +R   
Sbjct: 649 I-------EVKVDLSKVLFVCTANYLGSIPGPLRDRMEI-IEVNGYTKNDKIEITKRHLI 700

Query: 195 --GAKLTGL 201
              AK  GL
Sbjct: 701 PAAAKKVGL 709


>gi|309777529|ref|ZP_07672482.1| cell division protease FtsH [Erysipelotrichaceae bacterium 3_1_53]
 gi|308914704|gb|EFP60491.1| cell division protease FtsH [Erysipelotrichaceae bacterium 3_1_53]
          Length = 618

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 53/105 (50%), Gaps = 15/105 (14%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +T  +  GQ EA + L+  +E  K+        A+     L VGPPG GKT LA+ VA E
Sbjct: 166 KTFLDVAGQEEAKAALQEMVEFLKSPERYKKIGAQMPKGALLVGPPGTGKTLLAKAVAGE 225

Query: 78  LGVNFRSTSGPVIAK--AGDLAALLTNL--EDRD----VLFIDEI 114
             V F S SG    +   G  AA + +L  + R+    ++FIDEI
Sbjct: 226 ANVPFFSISGSEFVEMFVGRGAARVRDLFKQAREKAPCIVFIDEI 270


>gi|300122679|emb|CBK23246.2| unnamed protein product [Blastocystis hominis]
          Length = 903

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 36/70 (51%), Gaps = 16/70 (22%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGD----------LAALLTNLE 104
           +L  GPPG GKT LA+ +ARE G NF S +   I     GD          LAA L+   
Sbjct: 621 LLLFGPPGTGKTMLAKALARESGANFLSIATSTIFNKYVGDSEQNTRAIFTLAARLSPC- 679

Query: 105 DRDVLFIDEI 114
              V+FIDEI
Sbjct: 680 ---VIFIDEI 686


>gi|296130892|ref|YP_003638142.1| AAA ATPase central domain protein [Cellulomonas flavigena DSM
           20109]
 gi|296022707|gb|ADG75943.1| AAA ATPase central domain protein [Cellulomonas flavigena DSM
           20109]
          Length = 541

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 94/236 (39%), Gaps = 36/236 (15%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA---RELGVN 81
           R   E   Q E     ++  +A   R     H++FVG PG GKTT+A++VA   R LG+ 
Sbjct: 229 RVKREIRQQAEVLRVERLRADAGLTRPSLTRHLVFVGNPGTGKTTVARLVAGLYRALGLL 288

Query: 82  FRST------SGPVIAKAGDLAALLTNLEDR---DVLFIDEIHRLS-----IIVEEILYP 127
            +        S  V    G  A   T +  +    VLFIDE + L+           L  
Sbjct: 289 EKGHLVEVDRSELVAGYLGQTATKTTEVVTKALGGVLFIDEAYSLADDQYGAEAVNTLVK 348

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP-LQDRFGIPIRLNFYEIE 186
            MED + +L+V          + ++RF          L TNP L+ RF   +  + Y   
Sbjct: 349 DMEDHRSELVV----IVAGYPLPMARF----------LSTNPGLESRFATTVAFDDYTDA 394

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA----GRLLRRVRDFAEVAHA 238
            L+ I    A+      + EA   +       PR      GRL R + D A + HA
Sbjct: 395 QLREIFALAARKADFEPSPEALDLVEQIVAAQPRHEGFGNGRLARNLLDRAVLKHA 450


>gi|226222849|ref|YP_002756956.1| cell division protein ftsH [Listeria monocytogenes Clip81459]
 gi|225875311|emb|CAS04008.1| Putative cell division protein ftsH [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
          Length = 695

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 216 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 275

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 276 IFIDEI 281


>gi|203287904|ref|YP_002222919.1| DNA polymerase III, gamma and tau subunits [Borrelia recurrentis
           A1]
 gi|201085124|gb|ACH94698.1| DNA polymerase III, gamma and tau subunits [Borrelia recurrentis
           A1]
          Length = 555

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 93/231 (40%), Gaps = 41/231 (17%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPR      GQ      LK  IE+ K  A A    +F GP G+GKT+ A+  +R L    
Sbjct: 19  RPRDFTSLEGQDFVVETLKHSIESNKI-ANAY---IFSGPRGVGKTSSARAFSRCLNCQ- 73

Query: 83  RSTSGPVIAKAGDL--AALLTNLEDRDVLFIDEIHRLSI-----IVEEILYPAMED---- 131
              +GP I   G       + N    DV+ ID     S+     I EEI++P        
Sbjct: 74  ---TGPTIMPCGTCFNCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPANSRYRV 130

Query: 132 FQLDLMVGEGPSA-----RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF---- 182
           + +D +     SA     ++V+   +    I ATT V  L + ++ R       NF    
Sbjct: 131 YIIDEVHMLSNSAFNALLKTVEEPPNYIVFIFATTEVHKLPDTIKSRCQ---HFNFRLLP 187

Query: 183 ----YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
               YE+  LK +         +   DEA   IA +S G+ R A  L  ++
Sbjct: 188 LDKIYEM--LKCVCLED----DIKYEDEALKWIAYKSGGSVRDAYTLFDQI 232


>gi|158336375|ref|YP_001517549.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris
           marina MBIC11017]
 gi|158306616|gb|ABW28233.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris
           marina MBIC11017]
          Length = 631

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 15/104 (14%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKAR-------AEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  E+ + L+  +E  K+        A+    VL VGPPG GKT +A+ VA E 
Sbjct: 168 TFDDVAGVEESKTELEEIVEFLKSPQRFTEIGAKIPKGVLLVGPPGTGKTLMAKAVAGEA 227

Query: 79  GVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEI 114
           GV F S SG    +   G  AA + +L ++       ++FIDE+
Sbjct: 228 GVPFFSISGSEFVELFVGTGAARVRDLFEQAKKKAPCIIFIDEL 271


>gi|119487887|ref|ZP_01621384.1| ClpX, ATPase regulatory subunit [Lyngbya sp. PCC 8106]
 gi|119455463|gb|EAW36601.1| ClpX, ATPase regulatory subunit [Lyngbya sp. PCC 8106]
          Length = 449

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           +++ VGP G GKT LAQ +A++L V F       + +AG    D+  +L  L        
Sbjct: 135 NIMLVGPTGCGKTLLAQTLAKQLDVPFAVADATTLTEAGYVGDDVENILLRLLQVADFDI 194

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 195 EAAQRGIIYIDEIDKIS 211


>gi|254933060|ref|ZP_05266419.1| FtsH [Listeria monocytogenes HPB2262]
 gi|254992585|ref|ZP_05274775.1| ATP-dependent metalloprotease FtsH [Listeria monocytogenes FSL
           J2-064]
 gi|21667250|gb|AAM74002.1|AF467001_3 FtsH [Listeria monocytogenes]
 gi|293584618|gb|EFF96650.1| FtsH [Listeria monocytogenes HPB2262]
          Length = 687

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 216 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 275

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 276 IFIDEI 281


>gi|91775521|ref|YP_545277.1| FtsH-2 peptidase [Methylobacillus flagellatus KT]
 gi|91709508|gb|ABE49436.1| membrane protease FtsH catalytic subunit [Methylobacillus
           flagellatus KT]
          Length = 605

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 39/70 (55%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           VL VGPPG GKT LA+ VA E GV F S SG    +   G  AA + +L ++       +
Sbjct: 193 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEMFVGVGAARVRDLFEQARGQAPAI 252

Query: 109 LFIDEIHRLS 118
           +FIDE+  L 
Sbjct: 253 IFIDELDALG 262


>gi|47097259|ref|ZP_00234819.1| ATP-dependent metalloprotease FtsH [Listeria monocytogenes str.
           1/2a F6854]
 gi|254900995|ref|ZP_05260919.1| hypothetical protein LmonJ_14313 [Listeria monocytogenes J0161]
 gi|254913937|ref|ZP_05263949.1| ATP-dependent metalloprotease FtsH [Listeria monocytogenes J2818]
 gi|254938273|ref|ZP_05269970.1| ATP-dependent metalloprotease FtsH [Listeria monocytogenes F6900]
 gi|47014359|gb|EAL05332.1| ATP-dependent metalloprotease FtsH [Listeria monocytogenes str.
           1/2a F6854]
 gi|258610883|gb|EEW23491.1| ATP-dependent metalloprotease FtsH [Listeria monocytogenes F6900]
 gi|293591955|gb|EFG00290.1| ATP-dependent metalloprotease FtsH [Listeria monocytogenes J2818]
          Length = 691

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 216 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 275

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 276 IFIDEI 281


>gi|46906452|ref|YP_012841.1| ATP-dependent metalloprotease FtsH [Listeria monocytogenes serotype
           4b str. F2365]
 gi|47093162|ref|ZP_00230937.1| ATP-dependent metalloprotease FtsH [Listeria monocytogenes str. 4b
           H7858]
 gi|46879716|gb|AAT03018.1| ATP-dependent metalloprotease FtsH [Listeria monocytogenes serotype
           4b str. F2365]
 gi|47018469|gb|EAL09227.1| ATP-dependent metalloprotease FtsH [Listeria monocytogenes str. 4b
           H7858]
 gi|328467976|gb|EGF39003.1| ATP-dependent metalloprotease FtsH [Listeria monocytogenes 1816]
 gi|332310629|gb|EGJ23724.1| ATP-dependent zinc metalloprotease FtsH [Listeria monocytogenes
           str. Scott A]
          Length = 691

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 216 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 275

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 276 IFIDEI 281


>gi|303248990|ref|ZP_07335236.1| ATP-dependent protease La [Desulfovibrio fructosovorans JJ]
 gi|302489639|gb|EFL49577.1| ATP-dependent protease La [Desulfovibrio fructosovorans JJ]
          Length = 819

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 82/196 (41%), Gaps = 50/196 (25%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           +  VGPPG+GKT+LA+ +AR +   F R + G V  +A              G +   L 
Sbjct: 364 LCLVGPPGVGKTSLAKSIARAMDREFVRLSLGGVRDEAEIRGHRRTYVGALPGKIIQSLK 423

Query: 102 NLE-DRDVLFIDEIHRLSI--------IVEEILYP----AMEDFQLDLMVGEGPSARSVK 148
            ++ +  V  +DE+ ++S          + E+L P    A  D  LD+            
Sbjct: 424 RVKFNNPVFCLDEVDKMSTDFRGDPSAALLEVLDPEQNYAYSDHYLDM-----------D 472

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY-EIEDL---------KTIVQRGAKL 198
            +LS+   I     +  +  PLQDR  I IR+  Y E E +         K I Q G K 
Sbjct: 473 YDLSKIFFITTANSLHSIPLPLQDRMEI-IRIPGYLETEKMEIGRRFLMPKNIEQHGLKP 531

Query: 199 TGLAVTDEAACEIAMR 214
             L + D+A  E+  R
Sbjct: 532 ENLDLADDALLEVIRR 547


>gi|319763663|ref|YP_004127600.1| ATP-dependent clp protease, ATP-binding subunit clpx
           [Alicycliphilus denitrificans BC]
 gi|330824072|ref|YP_004387375.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Alicycliphilus denitrificans K601]
 gi|317118224|gb|ADV00713.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Alicycliphilus denitrificans BC]
 gi|329309444|gb|AEB83859.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Alicycliphilus denitrificans K601]
          Length = 421

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LAQ +AR+L V F       + +AG +   + N+            
Sbjct: 117 NILLIGPTGSGKTLLAQTLARQLDVPFVMADATTLTEAGYVGEDVENIVQKLLQSCNYDV 176

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 177 ERAQRGIVYIDEIDKIS 193


>gi|268316402|ref|YP_003290121.1| ATP-dependent metalloprotease FtsH [Rhodothermus marinus DSM 4252]
 gi|310946760|sp|D0MGU8|FTSH_RHOM4 RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|262333936|gb|ACY47733.1| ATP-dependent metalloprotease FtsH [Rhodothermus marinus DSM 4252]
          Length = 697

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 44/95 (46%), Gaps = 11/95 (11%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           EE    VE   N K F        +    VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 221 EEVAEIVEFLKNPKKFTRLGGKLPKG---VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 277

Query: 88  P------VIAKAGDLAALLTNLEDRD--VLFIDEI 114
                  V   A  +  L    +++   ++FIDEI
Sbjct: 278 SDFVEMFVGVGAARVRDLFRQAKEKAPCIIFIDEI 312


>gi|254854450|ref|ZP_05243798.1| FtsH [Listeria monocytogenes FSL R2-503]
 gi|300766353|ref|ZP_07076312.1| ATP-dependent metalloprotease FtsH [Listeria monocytogenes FSL
           N1-017]
 gi|258607850|gb|EEW20458.1| FtsH [Listeria monocytogenes FSL R2-503]
 gi|300512952|gb|EFK40040.1| ATP-dependent metalloprotease FtsH [Listeria monocytogenes FSL
           N1-017]
          Length = 691

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 216 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 275

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 276 IFIDEI 281


>gi|50286197|ref|XP_445527.1| hypothetical protein [Candida glabrata CBS 138]
 gi|51701761|sp|Q6FW67|PEX6_CANGA RecName: Full=Peroxisomal biogenesis factor 6; AltName:
           Full=Peroxin-6
 gi|49524832|emb|CAG58438.1| unnamed protein product [Candida glabrata]
          Length = 1017

 Score = 42.0 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/32 (53%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +LF GPPG GKT LA+ +A    +NF S  GP
Sbjct: 754 ILFYGPPGTGKTLLAKAIATNFSLNFFSVKGP 785


>gi|33151466|ref|NP_872819.1| ATP-dependent protease ATP-binding subunit [Haemophilus ducreyi
           35000HP]
 gi|46576468|sp|Q7VP79|CLPX_HAEDU RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|33147686|gb|AAP95208.1| ATP-dependent Clp protease, ATP-binding ClpX subunit [Haemophilus
           ducreyi 35000HP]
          Length = 418

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTN------------- 102
           ++L +GP G GKT LA+ +AR L V F       + +AG +   + N             
Sbjct: 117 NILLIGPTGSGKTLLAETLARRLNVPFAVADATTLTQAGYVGEDVENVIQKLLMKCNFDA 176

Query: 103 -LEDRDVLFIDEIHRLS 118
            L +R ++FIDEI +++
Sbjct: 177 ELAERGIIFIDEIDKIT 193


>gi|322492871|emb|CBZ28150.1| putative replication factor C, subunit 4 [Leishmania mexicana
          MHOM/GT/2001/U1103]
          Length = 360

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+T+ +  G  EA S L+V      A+   L ++L  GPPG GKTT    +AR+L
Sbjct: 13 RPQTVADIVGNTEAISRLQVI-----AKEGNLPNLLLCGPPGTGKTTSMLCLARDL 63


>gi|322368069|ref|ZP_08042638.1| replication factor C small subunit [Haladaptatus paucihalophilus
          DX253]
 gi|320552085|gb|EFW93730.1| replication factor C small subunit [Haladaptatus paucihalophilus
          DX253]
          Length = 325

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 6/67 (8%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          +   RP+TL++  G  +  + LK +IE        L ++LF G  G+GKTT A  +A+EL
Sbjct: 17 VEKYRPQTLDDVAGHDDITARLKSYIERND-----LPNLLFSGQAGIGKTTCAVAIAKEL 71

Query: 79 -GVNFRS 84
           G +++S
Sbjct: 72 YGDSWQS 78


>gi|309358101|emb|CAP34442.2| CBR-RFC-4.1 protein [Caenorhabditis briggsae AF16]
          Length = 340

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+TL++   Q E  + LK        + + L H+LF GPPG GKT+ A    R+L
Sbjct: 23 RPKTLDDIAHQEEVVTMLK-----GALQGKDLPHLLFYGPPGTGKTSTALAFCRQL 73


>gi|305663571|ref|YP_003859859.1| AAA family ATPase, CDC48 subfamily [Ignisphaera aggregans DSM
           17230]
 gi|304378140|gb|ADM27979.1| AAA family ATPase, CDC48 subfamily [Ignisphaera aggregans DSM
           17230]
          Length = 737

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 8/77 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DV 108
           +L  GPPG GKT LA+ +A E G  F   +GP I     G+    L  + D        +
Sbjct: 234 ILLYGPPGCGKTLLAKALANETGAYFIPINGPEIMSKFYGESEQRLRQIFDEAKKNAPAI 293

Query: 109 LFIDEIHRLSIIVEEIL 125
           +FIDEI  L+   EE++
Sbjct: 294 IFIDEIDALAPKREEVV 310



 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT LA+  A E G NF +  GP I
Sbjct: 508 ILLYGPPGCGKTLLAKAAATESGANFIAVKGPEI 541


>gi|302038046|ref|YP_003798368.1| cell division protease FtsH [Candidatus Nitrospira defluvii]
 gi|300606110|emb|CBK42443.1| Cell division protease FtsH [Candidatus Nitrospira defluvii]
          Length = 604

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 91/205 (44%), Gaps = 28/205 (13%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL VGPPG GKT LA+ +A E GV F S SG    +   G  A+ + +L ++       +
Sbjct: 190 VLIVGPPGTGKTLLAKAIAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQGKKHAPCI 249

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRF------TLIAATTR 162
           +FIDEI  +  +    L    ++ +  L          + + +  F       LIAAT R
Sbjct: 250 IFIDEIDAVGRLRGAGLGGGHDEREQTL--------NQLLVEMDGFDTTEGVILIAATNR 301

Query: 163 VGLLTNPL--QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPR 220
             +L   L    RF   + +N  ++     I++   K   LA    A  E+   +RGTP 
Sbjct: 302 PDVLDPALLRPGRFDRQVVVNRPDLRGRSEILKVHTKKVPLA----ADVELEKIARGTPG 357

Query: 221 IAGRLLRRVRDFAEVAHAKTITREI 245
            +G  L  + + A +  A+   +E+
Sbjct: 358 FSGADLENLVNEAALWAARWNKKEV 382


>gi|326792449|ref|YP_004310270.1| ATP-dependent metalloprotease FtsH [Clostridium lentocellum DSM
           5427]
 gi|326543213|gb|ADZ85072.1| ATP-dependent metalloprotease FtsH [Clostridium lentocellum DSM
           5427]
          Length = 655

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 203 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 233


>gi|260886972|ref|ZP_05898235.1| cell division protein FtsH [Selenomonas sputigena ATCC 35185]
 gi|260863034|gb|EEX77534.1| cell division protein FtsH [Selenomonas sputigena ATCC 35185]
          Length = 670

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 50/104 (48%), Gaps = 15/104 (14%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78
           T E+  G  EA   L+  +E  K   +  D        VL  GPPG GKT LA+ VA E 
Sbjct: 162 TFEDVAGADEAKQELEEVVEFLKHPKKFNDLGARIPKGVLLYGPPGTGKTLLARAVAGEA 221

Query: 79  GVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEI 114
           GV F + SG    +   G  A+ + +L D+       ++FIDEI
Sbjct: 222 GVPFFTISGSDFVEMFVGVGASRVRDLFDQAKKNAPCIVFIDEI 265


>gi|300774297|ref|ZP_07084161.1| ATP-dependent Clp protease ATP-binding subunit [Chryseobacterium
           gleum ATCC 35910]
 gi|300506941|gb|EFK38075.1| ATP-dependent Clp protease ATP-binding subunit [Chryseobacterium
           gleum ATCC 35910]
          Length = 378

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 61/128 (47%), Gaps = 30/128 (23%)

Query: 21  LLRPRTLEEF-----TGQVEACSNLKVFIEAAKARA-EALD----------HVLFVGPPG 64
           L +P+ ++EF      GQ +A   L + +     R   A D          +++ +G  G
Sbjct: 40  LKKPKEIKEFLDQYVIGQDQAKKQLSIAVYNHYKRLLHAQDENREVELEKSNIIMIGETG 99

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL----------EDRDVLF 110
            GKT LA+ +AREL V F      ++ +AG    D+ ++L+ L           ++ ++F
Sbjct: 100 TGKTLLAKTIARELNVPFCIVDATILTEAGYVGEDVESILSRLLMVADYDVEKAEKGIVF 159

Query: 111 IDEIHRLS 118
           IDEI +++
Sbjct: 160 IDEIDKIA 167


>gi|170077524|ref|YP_001734162.1| cell division protein ftsH like protein (ATP-dependent zinc
           metallopeptidase) [Synechococcus sp. PCC 7002]
 gi|169885193|gb|ACA98906.1| Cell division protein ftsH like protein (ATP-dependent zinc
           metallopeptidase) [Synechococcus sp. PCC 7002]
          Length = 625

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 51/104 (49%), Gaps = 15/104 (14%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKAR-------AEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  EA + L   +E  K         A+    VL VGPPG GKT +A+ VA E 
Sbjct: 168 TFDDVAGVEEAKTELTEIVEFLKTPQRYTAIGAKIPKGVLLVGPPGTGKTLMAKAVAGEA 227

Query: 79  GVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEI 114
           GV F S SG    +   G  AA + +L ++       ++FIDE+
Sbjct: 228 GVPFFSISGSEFVELFVGAGAARVRDLFEQAKKKAPCIIFIDEL 271


>gi|148233376|ref|NP_001080677.1| replication factor C (activator 1) 5, 36.5kDa [Xenopus laevis]
 gi|27882432|gb|AAH44712.1| Rfc5-prov protein [Xenopus laevis]
          Length = 335

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+TL++     +  S ++ FI   K     L H+LF GPPG GKT+     A++L
Sbjct: 22 RPQTLDDLISHQDILSTIQRFISEDK-----LPHLLFYGPPGTGKTSTILACAKQL 72


>gi|84996647|ref|XP_953045.1| replication factor C subunit [Theileria annulata strain Ankara]
 gi|65304041|emb|CAI76420.1| replication factor C subunit, putative [Theileria annulata]
          Length = 347

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 5/62 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
          RP TL++     +  S L VF E  +     L H+LF GPPG GKT+    ++R +  N 
Sbjct: 14 RPETLQDIISHEDIMSTLMVFAEKGQ-----LPHLLFHGPPGSGKTSTILAISRYMYGNS 68

Query: 83 RS 84
          R+
Sbjct: 69 RN 70


>gi|85110311|ref|XP_963397.1| activator 1 subunit 3 [Neurospora crassa OR74A]
 gi|28881264|emb|CAD70523.1| related to replication factor C chain Rfc3 [Neurospora crassa]
 gi|28925076|gb|EAA34161.1| activator 1 subunit 3 [Neurospora crassa OR74A]
          Length = 389

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 5/56 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           RP +L + +GQ +  + +  F++  +     L H+LF GPPG GKT+    +AR++
Sbjct: 50  RPVSLSDVSGQQDILATINKFVDTNR-----LPHLLFYGPPGTGKTSTVLALARQI 100


>gi|325958394|ref|YP_004289860.1| Replication factor C small subunit [Methanobacterium sp. AL-21]
 gi|325329826|gb|ADZ08888.1| Replication factor C small subunit [Methanobacterium sp. AL-21]
          Length = 347

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 11/81 (13%)

Query: 4  REGLLSRNVSQEDAD------ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
          R+ L++     E+ D      +   RP+TL+E  GQ      LK +++        + ++
Sbjct: 11 RQQLINNATQYENGDSMNAPWVEKYRPQTLDEVVGQEHTILRLKRYVKEGN-----MPNL 65

Query: 58 LFVGPPGLGKTTLAQVVAREL 78
          +F GP G+GKTT +  +A+E+
Sbjct: 66 MFTGPAGVGKTTTSIALAKEM 86


>gi|313125329|ref|YP_004035593.1| proteasome-activating nucleotidase [Halogeometricum borinquense DSM
           11551]
 gi|312291694|gb|ADQ66154.1| Proteasome-activating nucleotidase [Halogeometricum borinquense DSM
           11551]
          Length = 409

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 46/88 (52%), Gaps = 11/88 (12%)

Query: 35  EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA- 93
           +  SN ++F   AK   E    VL  GPPG GKT LA+ VA E    F   +G  + +  
Sbjct: 169 DPLSNPEMF---AKVGVEPPSGVLLHGPPGTGKTMLAKAVANETDATFIKMAGSELVRKF 225

Query: 94  -GDLAALLTNL----EDRD--VLFIDEI 114
            G+ A L+ +L     DR+  V+FIDEI
Sbjct: 226 IGEGARLVRDLFELAADREPAVIFIDEI 253


>gi|290558951|gb|EFD92336.1| AAA family ATPase, CDC48 subfamily [Candidatus Parvarchaeum
           acidophilus ARMAN-5]
 gi|290559274|gb|EFD92611.1| AAA family ATPase, CDC48 subfamily [Candidatus Parvarchaeum
           acidophilus ARMAN-5]
          Length = 764

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 8/75 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDR------DV 108
           VL  GPPG GKT LA+ VA E   +F + +GP V++K  GD    L  + D        +
Sbjct: 251 VLLYGPPGAGKTLLARAVADESDAHFITINGPEVMSKWVGDAEKKLREIFDDAEKNAPSI 310

Query: 109 LFIDEIHRLSIIVEE 123
           +FIDEI  ++   EE
Sbjct: 311 IFIDEIDAIATKREE 325



 Score = 40.0 bits (92), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           +L  GPPG GKT LA+ VA E   NF +  GP I     G+    +  + D+       +
Sbjct: 525 ILLFGPPGTGKTLLAKAVAHETESNFIAIKGPEIYNKYVGESEKRVREIFDKARQVSPSI 584

Query: 109 LFIDEIHRLS 118
           +FIDE+  ++
Sbjct: 585 IFIDELDSIA 594


>gi|242767242|ref|XP_002341331.1| AAA family ATPase/60S ribosome export protein Rix7, putative
           [Talaromyces stipitatus ATCC 10500]
 gi|218724527|gb|EED23944.1| AAA family ATPase/60S ribosome export protein Rix7, putative
           [Talaromyces stipitatus ATCC 10500]
          Length = 740

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 35/72 (48%), Gaps = 3/72 (4%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           ADI  L     E  T  V+   N +++   AK    A   VL  GPPG GKT LA+ VA 
Sbjct: 480 ADIGALGGIRDELVTAVVDPIKNPEIY---AKVGITAPTGVLLWGPPGCGKTLLAKAVAN 536

Query: 77  ELGVNFRSTSGP 88
           E   NF S  GP
Sbjct: 537 ESRANFISIKGP 548



 Score = 39.7 bits (91), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL  GPPG GKT LA   A +LGV F S S P +    +G+    L    D        +
Sbjct: 211 VLLHGPPGCGKTMLANAFAADLGVPFISISAPSVVSGMSGESEKALREHFDEAKKVAPCL 270

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 271 IFIDEIDAIT 280


>gi|167754078|ref|ZP_02426205.1| hypothetical protein ALIPUT_02366 [Alistipes putredinis DSM 17216]
 gi|167658703|gb|EDS02833.1| hypothetical protein ALIPUT_02366 [Alistipes putredinis DSM 17216]
          Length = 639

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 88/233 (37%), Gaps = 37/233 (15%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP T     GQ    S LK  IE    R +     LF GP G+GKTT A++ A+   +N 
Sbjct: 12  RPATFSSVVGQKHITSTLKNAIE----RGQLAHAYLFCGPRGVGKTTCARIFAK--AINC 65

Query: 83  RSTSGPVIAKAGDL----------------AALLTNLED-----RDVLFIDEIHRLSI-I 120
               G     A +                 AA   ++ED       V  I ++ R S+ I
Sbjct: 66  LHPEGAEACNACESCRSFNDGRSLNIHELDAASNNSVEDIRSLIEQVRIIPQVGRYSVFI 125

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           ++E+   +   F   L   E P A ++         I ATT    +   +  R  I    
Sbjct: 126 IDEVHMLSAAAFNAFLKTLEEPPAHAI--------FILATTEKHKIIPTILSRCQI-YDF 176

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
           N   +ED    ++  A   G+   DE+   IA ++ G  R A  +  +   F 
Sbjct: 177 NRIRVEDSVEYLKYIASQEGITADDESLNLIAQKADGGMRDALSMFDKAVSFC 229


>gi|118443553|ref|YP_876996.1| ATP-dependent protease LA [Clostridium novyi NT]
 gi|118134009|gb|ABK61053.1| ATP-dependent protease LA [Clostridium novyi NT]
          Length = 598

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 83/227 (36%), Gaps = 54/227 (23%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +S+LRP +  E  GQ     +L      +K  +    H++  GPPG+GKTT A++   E+
Sbjct: 129 LSMLRPSSFSEIVGQERPIKSL-----ISKLASPYPQHIILYGPPGVGKTTAARLALEEV 183

Query: 79  ------------------GVNFR------------STSGPVIAKAG-DLAAL-------- 99
                             G   R            S   P+   +  DLA +        
Sbjct: 184 KKLKHTPFGESAKFVEVDGTTLRWDPREIANPLLGSVHDPIYQGSKRDLAEIGVPEPKPG 243

Query: 100 LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG-EGPSARSVKINL------- 151
           L       VLFIDEI  L  I++  L   +ED +++       P   ++   +       
Sbjct: 244 LVTEAHGGVLFIDEIGELDTILQNKLLKVLEDKRVEFSSSYYDPDDENIPKYIKYLFENG 303

Query: 152 --SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA 196
             + F LI ATTR     NP        +        D+K IV+  A
Sbjct: 304 APADFVLIGATTREPKDINPALRSRCTEVYFEPLSAGDIKNIVENAA 350


>gi|57239194|ref|YP_180330.1| ATP-dependent Clp protease ATP-binding subunit clpA [Ehrlichia
           ruminantium str. Welgevonden]
 gi|58579152|ref|YP_197364.1| ATP-dependent Clp protease ATP-binding subunit clpA [Ehrlichia
           ruminantium str. Welgevonden]
 gi|57161273|emb|CAH58194.1| ATP-dependent Clp protease, ATP-binding subunit [Ehrlichia
           ruminantium str. Welgevonden]
 gi|58417778|emb|CAI26982.1| ATP-dependent Clp protease ATP-binding subunit clpA [Ehrlichia
           ruminantium str. Welgevonden]
          Length = 764

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 65/148 (43%), Gaps = 23/148 (15%)

Query: 6   GLLSRNVSQEDAD-ISLLRPRTLEEFTGQVEACSNLKVFIEAAKA----RAEALDHVLFV 60
           G+ SRN++  D D +  L     +   GQ  A S+L   I+ AKA      + L   LF 
Sbjct: 446 GIPSRNLAHNDLDKVKNLEKNLKQHIFGQDFAISSLVDSIKIAKAGLRDHRKPLASYLFT 505

Query: 61  GPPGLGKTTLAQVVARELGVNF-----------RSTSGPVIAKAG----DLAALLTNLED 105
           GP G+GKT LA+ +A  +G+              S S  + +  G    D   LLT+   
Sbjct: 506 GPTGVGKTELAKQLANHMGMKLIRFDMSEYMESHSISKIIGSPPGYVGYDQGGLLTDSIS 565

Query: 106 R---DVLFIDEIHRLSIIVEEILYPAME 130
           R    VL +DEI +    +  IL   M+
Sbjct: 566 RHQYSVLLLDEIEKAHSDIYNILLQIMD 593


>gi|332703465|ref|ZP_08423553.1| anti-sigma H sporulation factor, LonB [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332553614|gb|EGJ50658.1| anti-sigma H sporulation factor, LonB [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 833

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 83/190 (43%), Gaps = 44/190 (23%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA---GDLAALLTNLEDR------ 106
           + FVGPPG+GKT+L + +AR LG  F R + G +  +A   G     + ++  R      
Sbjct: 388 LCFVGPPGVGKTSLGRSIARSLGRQFVRMSLGGMRDEAEIRGHRRTYIGSMPGRIIQSIK 447

Query: 107 ------DVLFIDEIHRL--------SIIVEEILYPAME-DFQLDLMVGEGPSARSVKINL 151
                  ++ +DEI ++        S  + E+L P     FQ   +        +V  +L
Sbjct: 448 QAGTKNPIIMLDEIDKVGTDFRGDPSSALLEVLDPEQNYTFQDHYL--------NVPFDL 499

Query: 152 SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI-----VQRGAKLTGLA---- 202
           S+   I  +  +  +  PL+DR  I IR+  Y   D   I     V R AK  GL+    
Sbjct: 500 SKVMFICTSNVLDTIPGPLRDRMEI-IRIPGYTESDKVKIARTYLVPRQAKENGLSEDEV 558

Query: 203 -VTDEAACEI 211
            +TD+   ++
Sbjct: 559 QITDQVIAKV 568


>gi|330839242|ref|YP_004413822.1| ATP-dependent metalloprotease FtsH [Selenomonas sputigena ATCC
           35185]
 gi|329747006|gb|AEC00363.1| ATP-dependent metalloprotease FtsH [Selenomonas sputigena ATCC
           35185]
          Length = 663

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 50/104 (48%), Gaps = 15/104 (14%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78
           T E+  G  EA   L+  +E  K   +  D        VL  GPPG GKT LA+ VA E 
Sbjct: 155 TFEDVAGADEAKQELEEVVEFLKHPKKFNDLGARIPKGVLLYGPPGTGKTLLARAVAGEA 214

Query: 79  GVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEI 114
           GV F + SG    +   G  A+ + +L D+       ++FIDEI
Sbjct: 215 GVPFFTISGSDFVEMFVGVGASRVRDLFDQAKKNAPCIVFIDEI 258


>gi|313884248|ref|ZP_07818014.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Eremococcus
           coleocola ACS-139-V-Col8]
 gi|312620695|gb|EFR32118.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Eremococcus
           coleocola ACS-139-V-Col8]
          Length = 415

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 32/134 (23%)

Query: 17  ADISLLRPRTL-----EEFTGQVEACSNLKVFI---------EAAKARAEALD----HVL 58
            DI +L+P  +     +   GQ +A  NL V +            K   + +D    ++ 
Sbjct: 56  GDIQVLKPNEIMTILDQYVVGQKQAKKNLSVAVYNHYKRIMHNQDKQEEDEVDLQKSNIA 115

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL----------E 104
            +GP G GKT LAQ +AR L V F       + +AG    D+  +L  L           
Sbjct: 116 LIGPTGSGKTYLAQTLARILNVPFAIADATTLTEAGYVGEDVENVLLKLVQAADYDVAKA 175

Query: 105 DRDVLFIDEIHRLS 118
           ++ +++IDEI ++S
Sbjct: 176 EKGIIYIDEIDKIS 189


>gi|302348206|ref|YP_003815844.1| Cell division control protein 48, AAA family [Acidilobus
           saccharovorans 345-15]
 gi|302328618|gb|ADL18813.1| Cell division control protein 48, AAA family [Acidilobus
           saccharovorans 345-15]
          Length = 740

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 58/123 (47%), Gaps = 22/123 (17%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDR------DV 108
           VL  GPPG GKT LA+ VA E G NF +  GP V++K  G+    +  +  +       V
Sbjct: 500 VLLFGPPGTGKTMLAKAVATESGANFIAIRGPEVLSKWVGESEKAIREIFKKARQYAPAV 559

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVK-----INLSRFTLIAATTRV 163
           +F DEI  ++         ++   + D  VGE   ++ +       NL    +IAAT R 
Sbjct: 560 VFFDEIESIA---------SLRGTEEDSNVGERIVSQLLTEIDGITNLENVVVIAATNRP 610

Query: 164 GLL 166
            L+
Sbjct: 611 DLV 613



 Score = 36.6 bits (83), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL  GPPG GKT LA+ VA E    F + +GP I
Sbjct: 227 VLLYGPPGTGKTLLAKAVATESDAYFVAINGPEI 260


>gi|317126811|ref|YP_004093093.1| ATP-dependent metalloprotease FtsH [Bacillus cellulosilyticus DSM
           2522]
 gi|315471759|gb|ADU28362.1| ATP-dependent metalloprotease FtsH [Bacillus cellulosilyticus DSM
           2522]
          Length = 680

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 204 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 263

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 264 IFIDEI 269


>gi|229917401|ref|YP_002886047.1| ATP-dependent metalloprotease FtsH [Exiguobacterium sp. AT1b]
 gi|229468830|gb|ACQ70602.1| ATP-dependent metalloprotease FtsH [Exiguobacterium sp. AT1b]
          Length = 674

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 200 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 259

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 260 IFIDEI 265


>gi|156841391|ref|XP_001644069.1| hypothetical protein Kpol_1014p31 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156114703|gb|EDO16211.1| hypothetical protein Kpol_1014p31 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 1044

 Score = 42.0 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 17/32 (53%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT +A+ +A    +NF S  GP
Sbjct: 773 VLFYGPPGTGKTLMAKAIATNFSLNFFSVKGP 804


>gi|146094540|ref|XP_001467307.1| replication factor C, subunit 4 [Leishmania infantum JPCM5]
 gi|321398414|emb|CBZ08802.1| putative replication factor C, subunit 4 [Leishmania infantum
          JPCM5]
          Length = 360

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+T+ +  G  EA S L+V      A+   L ++L  GPPG GKTT    +AR+L
Sbjct: 13 RPQTVADIVGNTEAISRLQVI-----AKEGNLPNLLLCGPPGTGKTTSMLCLARDL 63


>gi|187920402|ref|YP_001889433.1| ATP-dependent protease La [Burkholderia phytofirmans PsJN]
 gi|302425038|sp|B2TFQ5|LON_BURPP RecName: Full=Lon protease; AltName: Full=ATP-dependent protease La
 gi|187718840|gb|ACD20063.1| ATP-dependent protease La [Burkholderia phytofirmans PsJN]
          Length = 804

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 60/246 (24%), Positives = 101/246 (41%), Gaps = 50/246 (20%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           + F+GPPG+GKT+L Q +AR L   F R + G V  +A              G++   + 
Sbjct: 372 LCFLGPPGVGKTSLGQSIARALERPFVRVSLGGVHDEAEIRGHRRTYIGAMPGNIIQAIR 431

Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLS 152
               R+ V+ +DE+ +L   V         E+L P       D  +G       V  +LS
Sbjct: 432 KAGARNCVMLLDELDKLGQGVHGDPAAAMLEVLDPEQNASFRDNYLG-------VPFDLS 484

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT----IVQRGAKLTGLAVTDEAA 208
               +A   ++  +  PL+DR  I     + E E  +     +V R  +  GL     A 
Sbjct: 485 AIVFVATANQIEGIAGPLRDRMEILDLPGYTEAEKFQIAQRFLVPRQLEACGLTA---AQ 541

Query: 209 CEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA---ALLRLAIDKMGFDQLDL 265
           CE+   +         L   +RD+   A  +++ R+I        LR+A D    ++++ 
Sbjct: 542 CELPDET---------LRAIIRDYTREAGVRSLERQIGAVFRYVALRVAEDPSTHERIEP 592

Query: 266 RYLTMI 271
             L+ I
Sbjct: 593 DRLSSI 598


>gi|55377635|ref|YP_135485.1| cell division control protein 48 [Haloarcula marismortui ATCC
           43049]
 gi|55230360|gb|AAV45779.1| cell division control protein 48 [Haloarcula marismortui ATCC
           43049]
          Length = 757

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 21/37 (56%), Positives = 22/37 (59%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           EA   VL  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 498 EAAKGVLMYGPPGTGKTLLAKAVANEAQSNFISVKGP 534



 Score = 40.4 bits (93), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DV 108
           VL  GPPG GKT +A+ VA E+   F + SGP I     G+    L  + D        +
Sbjct: 230 VLLHGPPGTGKTLMAKAVANEIDAYFTTISGPEIMSKYYGESEEQLREVFDEASENAPAI 289

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 290 VFIDEIDSIA 299


>gi|14590568|ref|NP_142636.1| cell division control [Pyrococcus horikoshii OT3]
 gi|3257095|dbj|BAA29778.1| 840aa long hypothetical cell division control protein (transitional
           endoplasmic reticulum ATPase) [Pyrococcus horikoshii
           OT3]
          Length = 840

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 52/116 (44%), Gaps = 16/116 (13%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
           T E+  G  EA   ++  +E      E  +         VL  GPPG GKT LA+ VA E
Sbjct: 210 TYEDIGGLKEAIQKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANE 269

Query: 78  LGVNFRSTSGPVIAKA--GD----LAALLTNLEDR--DVLFIDEIHRLSIIVEEIL 125
               F + +GP I     G+    L  +    E+    ++FIDEI  ++   EE++
Sbjct: 270 ANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKREEVV 325



 Score = 38.1 bits (87), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL  GPPG GKT LA+ VA E   NF +  GP +
Sbjct: 584 VLLYGPPGTGKTLLAKAVATESEANFIAVRGPEV 617


>gi|325198516|gb|ADY93972.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           meningitidis G2136]
          Length = 414

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +AR+L V F       + +AG    D+  ++T L        
Sbjct: 114 NILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDV 173

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 174 EKAQRGIVYIDEIDKIS 190


>gi|313204334|ref|YP_004042991.1| ATP-dependent clp protease ATP-binding subunit clpx [Paludibacter
           propionicigenes WB4]
 gi|312443650|gb|ADQ80006.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Paludibacter
           propionicigenes WB4]
          Length = 410

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 61/127 (48%), Gaps = 29/127 (22%)

Query: 21  LLRPRTLEEF-----TGQVEACSNLKVFIEAAKAR---AEALD-------HVLFVGPPGL 65
           L +P  ++E+      GQ EA   L V +     R   A+  D       +++ VG  G 
Sbjct: 60  LPKPTEIKEYLDQYVIGQNEAKKYLSVAVYNHYKRLMQAKTSDDVEIEKSNIIMVGYTGT 119

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL----------EDRDVLFI 111
           GKT LA+ +A++L V F      V+ +AG    D+ ++LT L           +R ++FI
Sbjct: 120 GKTLLAKTIAKKLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVADYDVKAAERGIVFI 179

Query: 112 DEIHRLS 118
           DEI +++
Sbjct: 180 DEIDKIA 186


>gi|297624945|ref|YP_003706379.1| ATP-dependent metalloprotease FtsH [Truepera radiovictrix DSM
           17093]
 gi|297166125|gb|ADI15836.1| ATP-dependent metalloprotease FtsH [Truepera radiovictrix DSM
           17093]
          Length = 665

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 50/104 (48%), Gaps = 15/104 (14%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKAR-------AEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T E+  G  EA   LK  ++  K         AE    +L VGPPG GKT LA+ VA E 
Sbjct: 161 TFEDVAGHEEAKQELKEVVDFLKNPQKYLRIGAEIPKGMLLVGPPGTGKTLLARAVAGEA 220

Query: 79  GVNFRSTSGPVIAK--AGDLAALLTNL--EDRD----VLFIDEI 114
           GV F + S     +   G  A+ + NL  E R     ++FIDE+
Sbjct: 221 GVPFLTVSASEFMEMFVGVGASRVRNLFEEARKASPAIIFIDEL 264


>gi|217965694|ref|YP_002351372.1| cell division protein FtsH [Listeria monocytogenes HCC23]
 gi|217334964|gb|ACK40758.1| cell division protein FtsH [Listeria monocytogenes HCC23]
 gi|307569759|emb|CAR82938.1| ATP-dependent metalloprotease [Listeria monocytogenes L99]
          Length = 690

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 216 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 275

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 276 IFIDEI 281


>gi|241859994|ref|XP_002416257.1| chromosome transmission fidelity factor, putative [Ixodes
           scapularis]
 gi|215510471|gb|EEC19924.1| chromosome transmission fidelity factor, putative [Ixodes
           scapularis]
          Length = 833

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 35/72 (48%), Gaps = 18/72 (25%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVN--------------FRSTSGPVIAKAGDLAALLTN 102
           VL  GPPGLGKTTLA V+AR  G N              F++T    +  A  + A+L  
Sbjct: 264 VLLYGPPGLGKTTLAHVIARHAGYNVVELNASDDRSPEVFKTT----LEAATQMRAVLGQ 319

Query: 103 LEDRDVLFIDEI 114
               + L IDEI
Sbjct: 320 DPRPNCLIIDEI 331


>gi|170087828|ref|XP_001875137.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164650337|gb|EDR14578.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 334

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 6/71 (8%)

Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
          Q    +   RP TL++     +  + ++ FIE  +     L H+LF GPPG GKT+    
Sbjct: 13 QRSFRVEKYRPVTLDDVVSHKDITNTIERFIEKNR-----LPHLLFYGPPGTGKTSTILA 67

Query: 74 VAREL-GVNFR 83
          VAR + G  +R
Sbjct: 68 VARRIYGAQYR 78


>gi|121635078|ref|YP_975323.1| ATP-dependent protease ATP-binding subunit [Neisseria meningitidis
           FAM18]
 gi|166214793|sp|A1KUJ4|CLPX_NEIMF RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|120866784|emb|CAM10537.1| ATP-dependent Clp protease ATP-binding subunit [Neisseria
           meningitidis FAM18]
 gi|325132435|gb|EGC55128.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           meningitidis M6190]
 gi|325138423|gb|EGC60991.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           meningitidis ES14902]
 gi|325143447|gb|EGC65773.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           meningitidis M01-240013]
          Length = 414

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +AR+L V F       + +AG    D+  ++T L        
Sbjct: 114 NILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDV 173

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 174 EKAQRGIVYIDEIDKIS 190


>gi|307184045|gb|EFN70595.1| Protein YME1-like protein [Camponotus floridanus]
          Length = 753

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL VGPPG GKT LA+ VA E GV F   +GP
Sbjct: 336 VLLVGPPGTGKTLLARAVAGEAGVPFFHVAGP 367


>gi|306820815|ref|ZP_07454439.1| ATP-dependent Clp protease ATP-binding subunit [Eubacterium yurii
           subsp. margaretiae ATCC 43715]
 gi|304551133|gb|EFM39100.1| ATP-dependent Clp protease ATP-binding subunit [Eubacterium yurii
           subsp. margaretiae ATCC 43715]
          Length = 416

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 66/148 (44%), Gaps = 33/148 (22%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEALD 55
           M+D E    +N   +  DI+L +P+ ++ F      GQ  A   L V +     R   L+
Sbjct: 44  MIDEE---KQNYKSDSYDINLPKPKEIKSFLDEYIIGQESAKKVLSVSLYNHYKRVYNLE 100

Query: 56  H-----------VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALL 100
           +           +L +GP G GKT LAQ +A+ + V F       + +AG    D+  +L
Sbjct: 101 NKKDDIDIQKSNILLLGPTGSGKTLLAQTLAKIMNVPFAIADATTLTEAGYVGEDVENIL 160

Query: 101 TNL---EDRD-------VLFIDEIHRLS 118
             L    D +       +++IDEI +++
Sbjct: 161 LKLIQASDYNIERAQTGIIYIDEIDKIT 188


>gi|299117347|emb|CBN75303.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 354

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 5/60 (8%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          +   RP+T+++   Q E  + LK  I         L H+LF GPPG GKT+ A  +AR L
Sbjct: 31 VEKYRPKTVDDVAHQDEVTNTLKGAIATG-----VLPHLLFYGPPGTGKTSTALALARTL 85


>gi|261415785|ref|YP_003249468.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|261372241|gb|ACX74986.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|302327080|gb|ADL26281.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 417

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L VGP G GKT LAQ +AR L V F      V+ +AG    D+ +++  L        
Sbjct: 120 NLLLVGPTGSGKTLLAQTMARFLDVPFTIADATVLTEAGYVGEDVDSIIVRLLQAADYDV 179

Query: 104 --EDRDVLFIDEIHRLS 118
              +R ++FIDEI +++
Sbjct: 180 AKAERGIIFIDEIDKIA 196


>gi|313125920|ref|YP_004036190.1| ATPase AAA [Halogeometricum borinquense DSM 11551]
 gi|312292285|gb|ADQ66745.1| AAA family ATPase, CDC48 subfamily [Halogeometricum borinquense DSM
           11551]
          Length = 754

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL-EDRD-----V 108
           VL  GPPG GKT +A+ VA E+  +F + SGP I     G+    L  + ED +     +
Sbjct: 227 VLLHGPPGTGKTLIAKAVANEIDASFHTISGPEIMSKYYGESEEQLREIFEDAEENAPAI 286

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 287 VFIDEIDSIA 296



 Score = 40.4 bits (93), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 500 VLLYGPPGTGKTLLAKAVANEADSNFISVKGP 531


>gi|291287208|ref|YP_003504024.1| ATP-dependent metalloprotease FtsH [Denitrovibrio acetiphilus DSM
           12809]
 gi|290884368|gb|ADD68068.1| ATP-dependent metalloprotease FtsH [Denitrovibrio acetiphilus DSM
           12809]
          Length = 619

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 191 VLLVGPPGTGKTLLARAVAGEAGVPFYSISG 221


>gi|257388390|ref|YP_003178163.1| Vesicle-fusing ATPase [Halomicrobium mukohataei DSM 12286]
 gi|257170697|gb|ACV48456.1| Vesicle-fusing ATPase [Halomicrobium mukohataei DSM 12286]
          Length = 703

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ +A E GVNF   +GP
Sbjct: 489 VLLYGPPGTGKTLLARAIAGESGVNFIHVNGP 520



 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 54/126 (42%), Gaps = 20/126 (15%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFV 60
           S + + E ADI +      E+  G  E    ++  IE   +  E            VL  
Sbjct: 180 SEDEATETADIDV----NYEDIGGLDEELDQIREMIEMPLSEPERFRRLGIDPPSGVLLH 235

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGD----LAALLTNLEDR--DVLFID 112
           GPPG GKT +A+ VA E+   F + SGP I     G+    L       ED    +LFID
Sbjct: 236 GPPGTGKTLIARAVANEVDAYFDTISGPEIVSKYKGESEERLREAFERAEDNAPSILFID 295

Query: 113 EIHRLS 118
           EI  ++
Sbjct: 296 EIDSIA 301


>gi|289580089|ref|YP_003478555.1| ATPase AAA, CDC48 subfamily [Natrialba magadii ATCC 43099]
 gi|289529642|gb|ADD03993.1| AAA family ATPase, CDC48 subfamily [Natrialba magadii ATCC 43099]
          Length = 754

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 70/154 (45%), Gaps = 29/154 (18%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DV 108
           VL  GPPG GKT +A+ VA E+  +F++ SGP I           L  +    E+    +
Sbjct: 228 VLLHGPPGTGKTLMAKAVANEIDADFQTISGPEIMSKYYGESEEQLREVFEEAEENAPAI 287

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQ-------LDLMVGEGPSARSVKINLSRFTLIAATT 161
           +FIDE+  ++   EE    A  D +       L LM  +G   R       R T+IAAT 
Sbjct: 288 VFIDELDSIAAKREE----AGGDVERRVVAQLLSLM--DGLEER------GRVTVIAATN 335

Query: 162 RVGLLTNPLQ--DRFGIPIRLNFYEIEDLKTIVQ 193
           R+  +   L+   RF   I +   + +  K I+Q
Sbjct: 336 RIDDIDPALRRGGRFDREIEIGVPDKDGRKEILQ 369



 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 20/37 (54%), Positives = 22/37 (59%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +A   VL  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 496 QAAKGVLMYGPPGTGKTLLAKAVANEAQSNFISIKGP 532


>gi|158334765|ref|YP_001515937.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris
           marina MBIC11017]
 gi|158305006|gb|ABW26623.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris
           marina MBIC11017]
          Length = 635

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 15/104 (14%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  E+ + L+  +E  K+        A+    VL VGPPG GKT +A+ VA E 
Sbjct: 166 TFDDVAGVEESKTELEEIVEFLKSPQRFTEIGAKIPKGVLLVGPPGTGKTLMAKAVAGEA 225

Query: 79  GVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEI 114
           GV F S SG    +   G  AA + +L ++       ++FIDE+
Sbjct: 226 GVPFFSISGSEFVELFVGTGAARVRDLFEQAKKKAPCIIFIDEL 269


>gi|241662241|ref|YP_002980601.1| ATP-dependent metalloprotease FtsH [Ralstonia pickettii 12D]
 gi|240864268|gb|ACS61929.1| ATP-dependent metalloprotease FtsH [Ralstonia pickettii 12D]
          Length = 605

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 39/70 (55%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           VL VGPPG GKT LA+ VA E GV F S SG    +   G  AA + +L ++       +
Sbjct: 193 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEMFVGVGAARVRDLFEQARGQAPAI 252

Query: 109 LFIDEIHRLS 118
           +FIDE+  L 
Sbjct: 253 IFIDELDALG 262


>gi|21227358|ref|NP_633280.1| CdcH protein [Methanosarcina mazei Go1]
 gi|20905716|gb|AAM30952.1| CdcH protein [Methanosarcina mazei Go1]
          Length = 751

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL---EDRD---V 108
           VL  GPPG GKT +A+ VA E   NF + SGP I     G+    L  +    ++D   +
Sbjct: 213 VLLHGPPGTGKTMIAKAVASETDANFITISGPEIVSKYYGESEQKLREIFEEAEKDAPSI 272

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 273 IFIDEIDSIA 282



 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 485 VLLFGPPGTGKTLLAKAVANESEANFISIKGP 516


>gi|320101277|ref|YP_004176869.1| AAA family ATPase, CDC48 subfamily [Desulfurococcus mucosus DSM
           2162]
 gi|319753629|gb|ADV65387.1| AAA family ATPase, CDC48 subfamily [Desulfurococcus mucosus DSM
           2162]
          Length = 730

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E G NF +  GP
Sbjct: 492 VLLYGPPGCGKTLLAKAVATESGANFIAVKGP 523



 Score = 37.0 bits (84), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT LA+ +A E+   F + +GP I
Sbjct: 212 ILLYGPPGTGKTLLAKALANEVNAYFITINGPEI 245


>gi|314968427|gb|EFT12525.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL037PA1]
          Length = 429

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LAQ +AR+L V F       + +AG +   + N+            
Sbjct: 120 NILMLGPTGCGKTYLAQTMARQLNVPFAMADATALTEAGYVGEDVENILLKLLQAADFDV 179

Query: 104 --EDRDVLFIDEIHRLS 118
              +R +++IDEI +++
Sbjct: 180 KRAERGIVYIDEIDKVA 196


>gi|326782893|ref|YP_004323291.1| clamp loader subunit [Prochlorococcus phage P-RSM4]
 gi|310004152|gb|ADO98546.1| clamp loader subunit [Prochlorococcus phage P-RSM4]
          Length = 313

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 15/121 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+ +E+        +  K FI+  +     + ++L  G  G+GKTT+A+ +  ELG ++
Sbjct: 11  RPKNVEQCILPESVKTTFKSFIQQGE-----IPNLLLSGTAGVGKTTIAKALCHELGADY 65

Query: 83  RSTSGP--------VIAKAGDLAAL--LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
              +G         V  +A + AA   LT      VL IDE    +  V+ +L  ++E+F
Sbjct: 66  YVINGSDEGRFLDTVRNQAKNFAATVSLTAEAKHKVLIIDEADNTTPDVQLLLRASIEEF 125

Query: 133 Q 133
           Q
Sbjct: 126 Q 126


>gi|317057634|ref|YP_004106101.1| ATPase [Ruminococcus albus 7]
 gi|315449903|gb|ADU23467.1| ATPase associated with various cellular activities AAA_3
           [Ruminococcus albus 7]
          Length = 313

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 64/155 (41%), Gaps = 26/155 (16%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR--------- 106
           HVL    PG GKTTLA  + R +G+ FR         A D+       E +         
Sbjct: 35  HVLLEDTPGTGKTTLALALTRTMGLRFRRIQMTPDTTASDITGYSAYDEGKGEFVYHEGA 94

Query: 107 ---DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS-RFTLIAA--- 159
              D+L  DE++R S   +  L  AME+         G +   +   LS  FT+IA    
Sbjct: 95  AMTDLLLADELNRTSGRTQAALLEAMEE--------RGLTVDGITHELSPYFTVIATQNP 146

Query: 160 TTRVGLLTNPLQ--DRFGIPIRLNFYEIEDLKTIV 192
           T   G    PL   DRF   +RL   + E LK ++
Sbjct: 147 TGTAGTSAIPLSQLDRFMERLRLGAPDREALKRLI 181


>gi|256848388|ref|ZP_05553831.1| ATP-dependent metalloprotease FtsH [Lactobacillus coleohominis
           101-4-CHN]
 gi|256714986|gb|EEU29964.1| ATP-dependent metalloprotease FtsH [Lactobacillus coleohominis
           101-4-CHN]
          Length = 708

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           VL  GPPG GKT LA+ VA E GV F S SG    +   G  A+ + +L D+       +
Sbjct: 228 VLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFDQAKKNAPSI 287

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 288 IFIDEI 293


>gi|238879894|gb|EEQ43532.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 1078

 Score = 42.0 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 50/189 (26%), Positives = 75/189 (39%), Gaps = 38/189 (20%)

Query: 43  FIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNF-RSTSGP------------ 88
           FI   K        +L   GPPG GKT++A+ +A  L   + R   G             
Sbjct: 529 FISVGKISGNVDGKILCLAGPPGTGKTSIAKSIAEALNRKYTRIAVGGVQDVHDVKGHRR 588

Query: 89  --VIAKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVE--------EILYPAMEDFQLDLM 137
             V +  G +   LT  +  + ++ IDEI +L             EIL P   +  +D  
Sbjct: 589 TYVASIPGRIVTALTQAKTSNPLMLIDEIDKLDTTSHGGAARAFLEILDPEQNNSFVDNF 648

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR--- 194
           +        VK++LS+   +     +G +  PL+DR  I I +N Y   D   I +R   
Sbjct: 649 I-------EVKVDLSKVLFVCTANYLGSIPGPLRDRMEI-IEVNGYTKNDKIEITKRHLI 700

Query: 195 --GAKLTGL 201
              AK  GL
Sbjct: 701 PAAAKKVGL 709


>gi|224062519|ref|XP_002196825.1| PREDICTED: similar to spermatogenesis associated 5-like 1
           [Taeniopygia guttata]
          Length = 939

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 11/75 (14%)

Query: 55  DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLAALLTNL--------- 103
           + VL +GPPG+GKT + + VA+ELG      SGP +  ++ G+    L  +         
Sbjct: 231 NGVLLIGPPGVGKTLMVKAVAKELGAYLFGISGPALHGSRPGEGEENLRRVFEKGREMSN 290

Query: 104 EDRDVLFIDEIHRLS 118
           E   +LF DEI  L 
Sbjct: 291 EGPTILFFDEIDSLC 305


>gi|196229299|ref|ZP_03128164.1| ATPase associated with various cellular activities AAA_5
          [Chthoniobacter flavus Ellin428]
 gi|196226531|gb|EDY21036.1| ATPase associated with various cellular activities AAA_5
          [Chthoniobacter flavus Ellin428]
          Length = 205

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 11/63 (17%)

Query: 22 LRPRTLEEFTGQVEA-CSNLKVFIEAAKARA-----EALDHVLFVGPPGLGKTTLAQVVA 75
           RP++ ++  GQ  + C+      +A+KAR       A   +L  GPPG+GKTT+A++VA
Sbjct: 3  WRPQSADDLIGQARSVCA-----AQASKARRVRDVRNAACKLLLYGPPGVGKTTVAELVA 57

Query: 76 REL 78
          REL
Sbjct: 58 REL 60


>gi|126180097|ref|YP_001048062.1| AAA family ATPase, CDC48 subfamily protein [Methanoculleus
           marisnigri JR1]
 gi|125862891|gb|ABN58080.1| AAA family ATPase, CDC48 subfamily [Methanoculleus marisnigri JR1]
          Length = 805

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 8/76 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNL-EDR-----DV 108
           VL  GPPG GKT +A+ VA E G +F S +GP VI+K  G+    L  + ED       +
Sbjct: 221 VLLYGPPGTGKTLIAKAVASESGAHFISIAGPEVISKYYGESEQRLREVFEDARQHAPAI 280

Query: 109 LFIDEIHRLSIIVEEI 124
           +FIDE+  ++   EE+
Sbjct: 281 IFIDELDSIAPRREEV 296



 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT +A+ VA E G NF    GP
Sbjct: 494 VLLYGPPGTGKTLIAKAVASESGANFVPVKGP 525


>gi|68070867|ref|XP_677347.1| ATPase [Plasmodium berghei strain ANKA]
 gi|56497430|emb|CAH94807.1| ATPase, putative [Plasmodium berghei]
          Length = 690

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT LA+ ++ E+  NF +  GP I
Sbjct: 292 ILLYGPPGCGKTMLAKAISNEMKANFIAIKGPEI 325


>gi|15678269|ref|NP_275384.1| replication factor C small subunit [Methanothermobacter
          thermautotrophicus str. Delta H]
 gi|42559322|sp|O26343|RFCS_METTH RecName: Full=Replication factor C small subunit; Short=RFC small
          subunit; AltName: Full=Clamp loader small subunit;
          AltName: Full=mthRFC small subunit
 gi|2621290|gb|AAB84747.1| replication factor C, small subunit [Methanothermobacter
          thermautotrophicus str. Delta H]
          Length = 321

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 6/64 (9%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE-LGVN 81
          RP+ L++  GQ      LK ++E      +++ +++F GP G+GKTT A  +ARE LG  
Sbjct: 13 RPQKLDDIVGQEHIIPRLKRYVEE-----KSMPNLMFTGPAGVGKTTAALALAREILGEY 67

Query: 82 FRST 85
          +R  
Sbjct: 68 WRQN 71


>gi|298208941|ref|YP_003717120.1| DNA polymerase III subunit gamma/tau [Croceibacter atlanticus
           HTCC2559]
 gi|83848868|gb|EAP86737.1| DNA polymerase III subunit gamma/tau [Croceibacter atlanticus
           HTCC2559]
          Length = 600

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 113/288 (39%), Gaps = 64/288 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP T  +  GQ +A +N  V        A+AL   LF GP G+GKTT A+++A+++    
Sbjct: 12  RPTTFADVVGQ-QAITNTLVNAIENNHLAQAL---LFTGPRGVGKTTCARILAKKI---- 63

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEI--------------HRLSIIVEEILYPA 128
            +  G  +A+  D A  +  L+      +D+I              H    I++E+   +
Sbjct: 64  -NQDGTDVAEDEDFAFNIFELDAASNNSVDDIRNLIDQVRIPPQVGHYKVYIIDEVHMLS 122

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
              F   L   E P   ++         I ATT    +         IP  L+  +I D 
Sbjct: 123 QAAFNAFLKTLEEPPKHAI--------FILATTEKHKI---------IPTILSRCQIFDF 165

Query: 189 KTIVQRGAKL--------TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           K I    AK          G+   D+A   IA ++ G  R A  +  RV  F+       
Sbjct: 166 KRITVTDAKQYLANIAEKEGVNAEDDALHIIAQKADGAMRDALSIYDRVVSFS----GNN 221

Query: 241 ITREIADAALLRLAIDKMGFDQLD-----------LRYLTMIARNFGG 277
           +TR+     L  L  D   F+  D           +++ T++++ F G
Sbjct: 222 LTRQAVTENLNVLDYDTY-FEMTDHILNNNIPEALVQFNTILSKGFDG 268


>gi|253576848|ref|ZP_04854173.1| ATP-dependent metalloprotease FtsH [Paenibacillus sp. oral taxon
           786 str. D14]
 gi|251843715|gb|EES71738.1| ATP-dependent metalloprotease FtsH [Paenibacillus sp. oral taxon
           786 str. D14]
          Length = 709

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 203 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 262

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 263 IFIDEI 268


>gi|293337100|ref|NP_001168382.1| hypothetical protein LOC100382151 [Zea mays]
 gi|223947901|gb|ACN28034.1| unknown [Zea mays]
          Length = 710

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ +A E GV F S SG       V   A  +  L    + R   +
Sbjct: 259 VLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFAAAKKRSPCI 318

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 319 IFIDEI 324


>gi|218885163|ref|YP_002434484.1| ATP-dependent metalloprotease FtsH [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218756117|gb|ACL07016.1| ATP-dependent metalloprotease FtsH [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 671

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 32/60 (53%), Gaps = 3/60 (5%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           EE +  VE  SN + F    +        VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 163 EELSEVVEFLSNPRKF---TRLGGRIPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISG 219


>gi|310600|gb|AAA72002.1| ATPase [Sulfolobus acidocaldarius]
          Length = 780

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT LA+ VA E G NF +  GP I
Sbjct: 524 ILLFGPPGTGKTMLAKAVATESGANFIAVRGPEI 557



 Score = 37.7 bits (86), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT LA+ +  E+G  F + +GP I
Sbjct: 249 ILLYGPPGTGKTLLARALRNEIGAYFITVNGPEI 282


>gi|71414095|ref|XP_809162.1| replication factor C, subunit 4 [Trypanosoma cruzi strain CL
          Brener]
 gi|70873501|gb|EAN87311.1| replication factor C, subunit 4, putative [Trypanosoma cruzi]
          Length = 144

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+++E+  G  +A S L+V      ++   L ++L  GPPG GKTT    +AR L
Sbjct: 13 RPKSMEDIVGNADAVSRLRVI-----SKEGNLPNLLLCGPPGTGKTTSVLCLARTL 63


>gi|260494910|ref|ZP_05815039.1| DNA polymerase III, subunits gamma and tau [Fusobacterium sp.
           3_1_33]
 gi|260197353|gb|EEW94871.1| DNA polymerase III, subunits gamma and tau [Fusobacterium sp.
           3_1_33]
          Length = 482

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 112/248 (45%), Gaps = 35/248 (14%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP +  E +G+ E   +LK+ ++  K+ A A    LF GP G+GKTT+A+++A+  GVN 
Sbjct: 10  RPSSFSEVSGENEIVKSLKLSLKN-KSMAHAY---LFSGPRGVGKTTVARLIAK--GVNC 63

Query: 83  RS--TSGPVIAKAGDLAAL-------LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
            +   +G    +  +  A+       L  ++      IDEI  L    E+I Y  +E  +
Sbjct: 64  LNLKENGEPCNECKNCKAINEGRFSDLIEIDAASNRSIDEIRSLK---EKINYQPVEGLK 120

Query: 134 LDLMVGEGPSARSVKINLSRFTL---------IAATTRVGLLTNPLQDRFGIPIRLNF-- 182
              ++ E         N    TL         I ATT +  +   +  R     R +F  
Sbjct: 121 KVYIIDEAHMLTKEAFNALLKTLEEPPAHVIFILATTELEKILPTIISRCQ---RYDFKP 177

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            ++E++K+ ++   K   L++TD+    I   S G+ R +  +L R+      A+ K I 
Sbjct: 178 LDLEEMKSGLEHILKEENLSMTDDVYPVIYENSSGSMRDSISILERL---IVTANGKEIN 234

Query: 243 REIADAAL 250
            +IA+  L
Sbjct: 235 LKIAEDTL 242


>gi|119597249|gb|EAW76843.1| peroxisome biogenesis factor 1, isoform CRA_d [Homo sapiens]
          Length = 549

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT LA V+ARE  +NF S  GP
Sbjct: 171 ILLYGPPGTGKTLLAGVIARESRMNFISVKGP 202


>gi|10640840|emb|CAC12618.1| probable replication factor C, 40 KD subunit [Thermoplasma
           acidophilum]
          Length = 330

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 95/230 (41%), Gaps = 37/230 (16%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL---- 78
           RP++L E  G+ E    LK F+E  +     + H+LF G  G GKT+ A  +A EL    
Sbjct: 22  RPKSLSEIYGEDENIQKLKSFVEKKE-----IPHLLFAGSVGTGKTSTAIALAIELFGDS 76

Query: 79  ------GVNFRSTSG--PVIAKAGDLAALL-TNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
                  +N  + +G   +  K  D+A +  +N     +LF+DE  +L+   +  L   M
Sbjct: 77  WKENMVEMNASNENGIDVIRNKIKDIARIKPSNPLGFKILFLDEADQLTAEAQAALRRTM 136

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           E +                   +RF  I +      +  P+Q R  + +R      E + 
Sbjct: 137 EIYS----------------ETTRF--IFSCNYSSKIIPPIQSR-TVVMRFRPVPDEYIS 177

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
             +Q  AK  G  + +E+   +   S G  R A  +L+ V    E++  K
Sbjct: 178 RKLQEIAKNEGFQIDEESMHALVEVSAGDMRKAINVLQAVYTSGEISPKK 227


>gi|73920780|sp|Q07590|SAV_SULAC RecName: Full=Protein SAV
          Length = 780

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT LA+ VA E G NF +  GP I
Sbjct: 524 ILLFGPPGTGKTMLAKAVATESGANFIAVRGPEI 557



 Score = 40.0 bits (92), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 23/34 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT LA+ +A E+G  F + +GP I
Sbjct: 249 ILLYGPPGTGKTLLARALANEIGAYFITVNGPEI 282


>gi|58617205|ref|YP_196404.1| ATP-dependent Clp protease ATP-binding subunit clpA [Ehrlichia
           ruminantium str. Gardel]
 gi|58416817|emb|CAI27930.1| ATP-dependent Clp protease ATP-binding subunit clpA [Ehrlichia
           ruminantium str. Gardel]
          Length = 764

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 65/148 (43%), Gaps = 23/148 (15%)

Query: 6   GLLSRNVSQEDAD-ISLLRPRTLEEFTGQVEACSNLKVFIEAAKA----RAEALDHVLFV 60
           G+ SRN++  D D +  L     +   GQ  A S+L   I+ AKA      + L   LF 
Sbjct: 446 GIPSRNLAHNDLDKVKNLEKNLKQHIFGQDFAISSLVDSIKIAKAGLRDHRKPLASYLFT 505

Query: 61  GPPGLGKTTLAQVVARELGVNF-----------RSTSGPVIAKAG----DLAALLTNLED 105
           GP G+GKT LA+ +A  +G+              S S  + +  G    D   LLT+   
Sbjct: 506 GPTGVGKTELAKQLANHMGMKLIRFDMSEYMESHSISKIIGSPPGYVGYDQGGLLTDSIS 565

Query: 106 R---DVLFIDEIHRLSIIVEEILYPAME 130
           R    VL +DEI +    +  IL   M+
Sbjct: 566 RHQYSVLLLDEIEKAHSDIYNILLQIMD 593


>gi|332665521|ref|YP_004448309.1| ATP-dependent metalloprotease FtsH [Haliscomenobacter hydrossis DSM
           1100]
 gi|332334335|gb|AEE51436.1| ATP-dependent metalloprotease FtsH [Haliscomenobacter hydrossis DSM
           1100]
          Length = 665

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 233 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 263


>gi|331003804|ref|ZP_08327296.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Lachnospiraceae oral taxon 107 str. F0167]
 gi|330411996|gb|EGG91393.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Lachnospiraceae oral taxon 107 str. F0167]
          Length = 427

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 61/129 (47%), Gaps = 28/129 (21%)

Query: 18  DISLLRPRTLEEF-----TGQVEACSNLKVFIE------AAKARAEA---LDHVLFVGPP 63
           DI+LL+P+ ++ F      GQ  A   L V +        +K  AE      ++L +GP 
Sbjct: 59  DINLLKPKEIKNFLDEYVIGQDSAKKVLSVAVYNHYKRIKSKKSAEVEIQKSNILMLGPT 118

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---EDRD-------VL 109
           G GKT LAQ +A+ L V F       + +AG    D+  +L  L    D D       ++
Sbjct: 119 GSGKTYLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLIQAADGDINRAEYGII 178

Query: 110 FIDEIHRLS 118
           +IDEI +++
Sbjct: 179 YIDEIDKIT 187


>gi|327539583|gb|EGF26192.1| DNA polymerase III gamma and tau subunits [Rhodopirellula baltica
           WH47]
          Length = 651

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 105/260 (40%), Gaps = 45/260 (17%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPR   +  GQ      L+  IE ++     + H  LF G  G+GKT+ A++ A+ L   
Sbjct: 20  RPRDFTQLVGQDHVARALQGAIETSR-----VGHAYLFTGARGVGKTSTARIFAKALNHP 74

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
              T+ P      D+A  + + ED DV+ ID      I  +EI         L   VG  
Sbjct: 75  DGPTANP--DNESDVAQAIDSGEDVDVIEIDGASNRGI--DEIR-------SLRANVGVR 123

Query: 142 PSARSVKI----NLSRFTLIAATTRVGLLTNPLQ---------DRFGIPI-------RLN 181
           PS    KI     +   T  A    +  L  P +         D   IPI       R +
Sbjct: 124 PSRSRYKIYIIDEVHMLTGAAFNALLKTLEEPPEHVKFIFCTTDPEKIPITVLSRCQRFD 183

Query: 182 FYEIEDLKTIVQRGAKLTGL---AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE---- 234
           F  +E  K IVQR  ++       V DEA   +A R+ G+ R +  LL +V  F++    
Sbjct: 184 FAPVESDK-IVQRLREIVEAEDNTVEDEALELLARRAAGSMRDSQSLLEQVLSFSDGHLT 242

Query: 235 VAHAKTITREIADAALLRLA 254
             H  T+     D  L RLA
Sbjct: 243 ADHVHTMLGTADDQRLHRLA 262


>gi|295107774|emb|CBL21727.1| ATP-dependent metalloprotease FtsH [Ruminococcus obeum A2-162]
          Length = 630

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 47/103 (45%), Gaps = 15/103 (14%)

Query: 27  LEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
             +  G+ EA  NL+  ++         K  A     VL VGPPG GKT LA+ VA E  
Sbjct: 165 FSDVAGEEEAKENLQEIVDYLHNPEKYTKVGASMPKGVLLVGPPGTGKTMLAKAVAGESN 224

Query: 80  VNFRSTSGPVIAK------AGDLAALLTNLEDRD--VLFIDEI 114
           V F S SG    +      A  +  L    +++   ++FIDEI
Sbjct: 225 VPFFSMSGSEFVEMFVGMGASKVRDLFKQAKEKAPCIVFIDEI 267


>gi|242053361|ref|XP_002455826.1| hypothetical protein SORBIDRAFT_03g025820 [Sorghum bicolor]
 gi|241927801|gb|EES00946.1| hypothetical protein SORBIDRAFT_03g025820 [Sorghum bicolor]
          Length = 710

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ +A E GV F S SG       V   A  +  L    + R   +
Sbjct: 259 VLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFAAAKKRSPCI 318

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 319 IFIDEI 324


>gi|218296645|ref|ZP_03497363.1| ATP-dependent protease La [Thermus aquaticus Y51MC23]
 gi|218242958|gb|EED09491.1| ATP-dependent protease La [Thermus aquaticus Y51MC23]
          Length = 804

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 86/226 (38%), Gaps = 49/226 (21%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD----------------LAALL 100
           +LFVGPPG+GKT++A+ +A  LG  +   S   +    D                +  L 
Sbjct: 358 LLFVGPPGVGKTSIAKSIAEALGRKYVRISLGGVRDESDIRGHRRTYIGAMPGRIIQGLR 417

Query: 101 TNLEDRDVLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLS 152
                  V  +DE+ +L I  +        E+L PA     +D  +G       V  +LS
Sbjct: 418 QAGTKNPVFLLDEVDKLGISYQGDPAAALLEVLDPAQNKEFVDHYLG-------VPFDLS 470

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL----KTIVQRGAKLTGLAVTDEAA 208
               I        +  PL DR       ++ E E L    + ++ R  + TGL+      
Sbjct: 471 EVMFICTANFPQNIPAPLMDRMEAIEFTSYIEQEKLEIAKRYLLPRQMRETGLSEGQVVV 530

Query: 209 CEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            E A            L+R +  +   A  + + REI   ALLR A
Sbjct: 531 TEAA------------LMRLITHYTREAGVRQLEREI--GALLRKA 562


>gi|167390711|ref|XP_001739466.1| replication factor C subunit [Entamoeba dispar SAW760]
 gi|165896845|gb|EDR24167.1| replication factor C subunit, putative [Entamoeba dispar SAW760]
          Length = 539

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 6/63 (9%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81
          RP T +   G      +LK FI A +     + H+LF GPPG GKTT A  + ++L G  
Sbjct: 10 RPSTTDGIFGHEYILESLKQFINANQ-----IPHMLFYGPPGTGKTTTALAIVKQLCGTK 64

Query: 82 FRS 84
          F +
Sbjct: 65 FSA 67


>gi|291238456|ref|XP_002739147.1| PREDICTED: TER94-like [Saccoglossus kowalevskii]
          Length = 1200

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 9/71 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED---------RD 107
           +L  GPPG GKT LA+ VA E   NF S  GP +         + N++D           
Sbjct: 920 MLLYGPPGCGKTLLAKAVANECRANFLSVGGPELMAMPFGHTAMDNVKDLYNKARLASPC 979

Query: 108 VLFIDEIHRLS 118
           +LF DE+  +S
Sbjct: 980 ILFFDEMDSIS 990



 Score = 35.8 bits (81), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 55/127 (43%), Gaps = 13/127 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI----AKAG----DLAALLTNLEDRDV 108
           +L  GP G GKT + + +A E   +     GP I    A+AG    +L  +        +
Sbjct: 641 ILLTGPSGSGKTMIGKSLANETDASIMFIDGPDIVSKCAEAGVSVLELVFIDAEKNQPSI 700

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +FID I  L+   ++I   A  D Q+      G     +  NLSR  +I AT     L +
Sbjct: 701 VFIDAIDGLA-GKDDI---AHSDVQMKCASFLGTRMDRIHNNLSRVVVIGATENSSRL-D 755

Query: 169 PLQDRFG 175
           P   RFG
Sbjct: 756 PRLRRFG 762


>gi|189485278|ref|YP_001956219.1| DNA polymerase III subunit gamma/tau [uncultured Termite group 1
           bacterium phylotype Rs-D17]
 gi|170287237|dbj|BAG13758.1| DNA polymerase III subunit gamma/tau [uncultured Termite group 1
           bacterium phylotype Rs-D17]
          Length = 531

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 44/93 (47%), Gaps = 10/93 (10%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
            RP+  +E  GQ      LK  I + K  A A    LF GP G GKTT+A+++A+ L   
Sbjct: 10  FRPQNFDEVVGQEHISQTLKNSI-SEKRIAHAY---LFSGPRGCGKTTMARILAKALNCK 65

Query: 82  FRSTSGPVIAKAG--DLAALLTNLEDRDVLFID 112
               +GP I   G  +    ++     DVL ID
Sbjct: 66  ----NGPTIKPCGVCENCVEISKSSSVDVLEID 94


>gi|159029290|emb|CAO90156.1| ftsH3 [Microcystis aeruginosa PCC 7806]
          Length = 625

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL VGPPG GKT LA+ VA E GV F S SG    +   G  AA + +L ++       +
Sbjct: 205 VLLVGPPGTGKTLLAKAVAGEAGVAFFSISGSEFVELFVGAGAARVRDLFEQAKKKAPCI 264

Query: 109 LFIDEI 114
           +FIDE+
Sbjct: 265 IFIDEL 270


>gi|118443161|ref|YP_877130.1| ATP-dependent metalloprotease FtsH [Clostridium novyi NT]
 gi|310943127|sp|A0PXM8|FTSH_CLONN RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|118133617|gb|ABK60661.1| ATP-dependent metalloprotease FtsH [Clostridium novyi NT]
          Length = 676

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 35/69 (50%), Gaps = 7/69 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH-------VLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  E    L+  ++  K   + LD        +L VGPPG GKT LA+ VA E 
Sbjct: 166 TFKDVAGADEEKGELEEIVDFLKEPKKYLDMGARIPKGILLVGPPGTGKTLLAKAVAGEA 225

Query: 79  GVNFRSTSG 87
           GV F S SG
Sbjct: 226 GVPFFSISG 234


>gi|121593622|ref|YP_985518.1| ATP-dependent protease ATP-binding subunit ClpX [Acidovorax sp.
           JS42]
 gi|222110342|ref|YP_002552606.1| ATP-dependent protease ATP-binding subunit clpx [Acidovorax ebreus
           TPSY]
 gi|166214752|sp|A1W5B7|CLPX_ACISJ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|254763845|sp|B9MG15|CLPX_ACIET RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|120605702|gb|ABM41442.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acidovorax
           sp. JS42]
 gi|221729786|gb|ACM32606.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acidovorax
           ebreus TPSY]
          Length = 421

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LAQ +AR+L V F       + +AG +   + N+            
Sbjct: 117 NILLIGPTGSGKTLLAQTLARQLDVPFVMADATTLTEAGYVGEDVENIVQKLLQSCNYDV 176

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 177 ERAQRGIVYIDEIDKIS 193


>gi|60735079|dbj|BAD91025.1| valosin containing protein-2 [Eisenia fetida]
 gi|147225258|dbj|BAF62456.1| valosine containing peptide-2 [Eisenia fetida]
          Length = 763

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VLF GPPG GKT LA+ +A +   NF S  GP
Sbjct: 507 VLFYGPPGCGKTLLAKAIATQCQANFISIKGP 538



 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL------EDRDV 108
           VL  GPPG GKT +A+ VA E GV F   +GP I     GD  A L  +          +
Sbjct: 235 VLMYGPPGTGKTLIARAVANETGVYFIVINGPDIMSKWFGDSEANLRKIFETAEANSPSI 294

Query: 109 LFIDEI 114
           +FIDE+
Sbjct: 295 IFIDEM 300


>gi|268569884|ref|XP_002648361.1| C. briggsae CBR-RFC-4.2 protein [Caenorhabditis briggsae]
 gi|268573696|ref|XP_002641825.1| C. briggsae CBR-RFC-4.1 protein [Caenorhabditis briggsae]
 gi|187040034|emb|CAP21143.1| CBR-RFC-4.2 protein [Caenorhabditis briggsae AF16]
          Length = 335

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+TL++   Q E  + LK        + + L H+LF GPPG GKT+ A    R+L
Sbjct: 23 RPKTLDDIAHQEEVVTMLK-----GALQGKDLPHLLFYGPPGTGKTSTALAFCRQL 73


>gi|268567908|ref|XP_002647902.1| Hypothetical protein CBG23770 [Caenorhabditis briggsae]
 gi|187040787|emb|CAP20535.1| hypothetical protein CBG_23770 [Caenorhabditis briggsae AF16]
          Length = 299

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 5/56 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           RP  L E     +    L  FIE        L H+LF GPPG GKTT     AR++
Sbjct: 178 RPSKLNELVAHEQVVKTLTKFIEN-----RTLPHLLFYGPPGTGKTTTVLAAARKM 228


>gi|148256655|ref|YP_001241240.1| cell division protein FtsH [Bradyrhizobium sp. BTAi1]
 gi|146408828|gb|ABQ37334.1| membrane protease FtsH catalytic subunit [Bradyrhizobium sp. BTAi1]
          Length = 615

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           VL VGPPG GKT LA+ VA E GV F S SG    +   G  AA + +L ++       +
Sbjct: 195 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEMFVGVGAARVRDLFEQARAKAPAI 254

Query: 109 LFIDEIHRL 117
           +FIDE+  L
Sbjct: 255 IFIDELDAL 263


>gi|83286709|ref|XP_730279.1| cell division cycle protein 48 [Plasmodium yoelii yoelii str.
           17XNL]
 gi|23489959|gb|EAA21844.1| cell division cycle protein 48 homolog [Plasmodium yoelii yoelii]
          Length = 713

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT LA+ ++ E+  NF +  GP I
Sbjct: 307 ILLYGPPGCGKTMLAKAISNEMKANFIAIKGPEI 340


>gi|332027262|gb|EGI67346.1| Protein YME1-like protein [Acromyrmex echinatior]
          Length = 749

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL VGPPG GKT LA+ VA E GV F   +GP
Sbjct: 344 VLLVGPPGTGKTLLARAVAGEAGVPFFHVAGP 375


>gi|331083658|ref|ZP_08332769.1| hypothetical protein HMPREF0992_01693 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330403869|gb|EGG83421.1| hypothetical protein HMPREF0992_01693 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 603

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 198 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 228


>gi|327481003|gb|AEA84313.1| ATP-dependent metalloprotease FtsH [Pseudomonas stutzeri DSM 4166]
          Length = 626

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           VL VGPPG GKT LA+ VA E GV F S SG    +   G  AA + +L ++       +
Sbjct: 193 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEMFVGVGAARVRDLFEQARGQAPAI 252

Query: 109 LFIDEIHRL 117
           +FIDE+  L
Sbjct: 253 IFIDELDAL 261


>gi|260587358|ref|ZP_05853271.1| cell division protein FtsH [Blautia hansenii DSM 20583]
 gi|260542225|gb|EEX22794.1| cell division protein FtsH [Blautia hansenii DSM 20583]
          Length = 567

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 162 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 192


>gi|294656651|ref|XP_458947.2| DEHA2D11088p [Debaryomyces hansenii CBS767]
 gi|218511754|sp|Q6BS73|PEX6_DEBHA RecName: Full=Peroxisomal biogenesis factor 6; AltName:
           Full=Peroxin-6
 gi|199431634|emb|CAG87108.2| DEHA2D11088p [Debaryomyces hansenii]
          Length = 1198

 Score = 42.0 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 17/32 (53%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +LF GPPG GKT LA+ +A    +NF S  GP
Sbjct: 875 ILFYGPPGTGKTLLAKAIATNFSLNFFSVKGP 906


>gi|158301096|ref|XP_320860.4| AGAP011652-PA [Anopheles gambiae str. PEST]
 gi|157013476|gb|EAA00408.4| AGAP011652-PA [Anopheles gambiae str. PEST]
          Length = 749

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 37/69 (53%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL--EDRD----V 108
           +L  GPPG  KTTLA+ +A E G+ F S S   +     GD   L+T +  E R     V
Sbjct: 509 ILLYGPPGCAKTTLAKCLAAETGMTFLSLSAAQVYSPYVGDAEKLITRVFNEARTNAPAV 568

Query: 109 LFIDEIHRL 117
           +F+DEI  L
Sbjct: 569 VFLDEIDSL 577


>gi|150865419|ref|XP_001384629.2| peroxisomal assembly protein [Scheffersomyces stipitis CBS 6054]
 gi|149386675|gb|ABN66600.2| peroxisomal assembly protein [Scheffersomyces stipitis CBS 6054]
          Length = 1178

 Score = 42.0 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 17/32 (53%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +LF GPPG GKT LA+ +A    +NF S  GP
Sbjct: 864 ILFYGPPGTGKTLLAKAIATNFSLNFFSVKGP 895


>gi|115655395|ref|XP_790650.2| PREDICTED: similar to replication factor C, 40-kDa subunit
          [Strongylocentrotus purpuratus]
 gi|115928698|ref|XP_001184083.1| PREDICTED: similar to replication factor C, 40-kDa subunit
          [Strongylocentrotus purpuratus]
          Length = 352

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 6/81 (7%)

Query: 4  REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
          + G   ++ S E   +   RP +L +  G  E  S L+VF     +R   + +V+  GPP
Sbjct: 21 KAGGSGKSASYEMPWVEKYRPTSLSDVVGNEETVSRLEVF-----SREGNVPNVIIAGPP 75

Query: 64 GLGKTTLAQVVARE-LGVNFR 83
          G GKTT    +AR  LG +F+
Sbjct: 76 GTGKTTSILCLARTMLGASFK 96


>gi|325272001|ref|ZP_08138448.1| ATP-dependent protease La [Pseudomonas sp. TJI-51]
 gi|324102868|gb|EGC00268.1| ATP-dependent protease La [Pseudomonas sp. TJI-51]
          Length = 806

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 87/215 (40%), Gaps = 53/215 (24%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAKAGDLAALLT 101
           VL VGPPG+GKT++ + +A  LG  F   S                 + A+ G L   L 
Sbjct: 388 VLLVGPPGVGKTSIGKSIAESLGRPFYRFSVGGMRDEAEIKGHRRTYIGAQPGKLVQALK 447

Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAME----DFQLDLMVGEGPSARSVK 148
           ++E  + V+ +DEI ++    +        E L P       D  LDL           +
Sbjct: 448 DVEVMNPVIMLDEIDKMGQSYQGDPASALLETLDPEQNVDFLDHYLDL-----------R 496

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR----------GAKL 198
           ++LS+   +     +  +  PL DR  + IRL+ Y  E+   I +R          G   
Sbjct: 497 LDLSKVLFVCTANTLDSIPGPLLDRMEV-IRLSGYITEEKLAIAKRHLWPKQLQKAGVAK 555

Query: 199 TGLAVTDEA---ACEIAMRSRGTPRIAGRLLRRVR 230
             L+++D A     E   R  G  ++  +L + VR
Sbjct: 556 ASLSISDSALRTVIEGYAREAGVRQLEKQLGKLVR 590


>gi|300709601|ref|YP_003735415.1| replication factor C small subunit [Halalkalicoccus jeotgali B3]
 gi|299123284|gb|ADJ13623.1| replication factor C small subunit [Halalkalicoccus jeotgali B3]
          Length = 329

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 6/71 (8%)

Query: 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
          +E+  +   RP TL E  GQ E    L+ ++E      + L ++LF G  G+GKTT A  
Sbjct: 14 REEIWVEKYRPGTLGEVIGQEEITDRLERYVER-----DDLPNLLFSGSAGIGKTTCATA 68

Query: 74 VAREL-GVNFR 83
          +ARE+ G ++R
Sbjct: 69 IAREVYGEDWR 79


>gi|258567588|ref|XP_002584538.1| ATP-dependent protease La [Uncinocarpus reesii 1704]
 gi|237905984|gb|EEP80385.1| ATP-dependent protease La [Uncinocarpus reesii 1704]
          Length = 900

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 72/167 (43%), Gaps = 21/167 (12%)

Query: 41  KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALL 100
           K+ +  +K + +    +L VGPPG GKT+LA+ VA  LG  F   S      A     ++
Sbjct: 446 KLQVLKSKRKTDKSPILLLVGPPGTGKTSLAKSVATSLGRRFHRISLGRTYVAAMPGLIV 505

Query: 101 TNLED----RDVLFIDEIHRL---------SIIVEEILYPAMEDFQLDLMVGEGPSARSV 147
             L+       V  +DEI ++         S  + E+L P       D  +       ++
Sbjct: 506 NGLKKVGVANPVFLLDEIDKVGGANFHGDPSAAMLEVLDPEQNHSFSDHYI-------NI 558

Query: 148 KINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
            I+LS+   IA    +  +  PL DR    I+L+ Y   + + I +R
Sbjct: 559 PIDLSKVLFIATANSLDTIPAPLLDRMET-IQLSGYTTIEKRHIARR 604


>gi|289807880|ref|ZP_06538509.1| Holliday junction DNA helicase [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 34

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 21/28 (75%), Positives = 22/28 (78%)

Query: 218 TPRIAGRLLRRVRDFAEVAHAKTITREI 245
           TPRIA RLLRRVRDFAEV H   I+ EI
Sbjct: 6   TPRIANRLLRRVRDFAEVKHDGAISAEI 33


>gi|61806033|ref|YP_214393.1| clamp loader subunit [Prochlorococcus phage P-SSM2]
 gi|61374542|gb|AAX44539.1| clamp loader subunit [Prochlorococcus phage P-SSM2]
 gi|265525243|gb|ACY76040.1| sliding clamp loader [Prochlorococcus phage P-SSM2]
          Length = 313

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 15/120 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T+EE           + F+   +     + ++L  GPPG+GKTT+A+ +  +LG ++
Sbjct: 11  RPQTIEECILPESTKKMFQDFLSKGE-----IPNMLLSGPPGIGKTTVAKCLCNQLGADY 65

Query: 83  RSTSGP--------VIAKAGDLAAL--LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
              +G         V   A + A+   LT+     V+ IDE    +  V+ +L  ++E+F
Sbjct: 66  YVINGSDEGRFLDTVRNNAKNFASTVSLTSESKHKVIIIDEADNTTPDVQLLLRASIEEF 125


>gi|58331833|ref|NP_001011112.1| replication factor C (activator 1) 5, 36.5kDa [Xenopus (Silurana)
          tropicalis]
 gi|54038730|gb|AAH84510.1| replication factor C (activator 1) 5 [Xenopus (Silurana)
          tropicalis]
 gi|89268121|emb|CAJ83540.1| replication factor C (activator 1) 5, 36.5kDa [Xenopus (Silurana)
          tropicalis]
          Length = 335

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+TL++     +  S ++ FI   K     L H+LF GPPG GKT+     A++L
Sbjct: 22 RPQTLDDLISHQDILSTIQRFISEDK-----LPHLLFYGPPGTGKTSTILACAKQL 72


>gi|15920578|ref|NP_376247.1| hypothetical protein ST0376 [Sulfolobus tokodaii str. 7]
 gi|15621361|dbj|BAB65356.1| 747aa long hypothetical SAV protein [Sulfolobus tokodaii str. 7]
          Length = 747

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT LA+ VA E G NF +  GP I
Sbjct: 491 ILLFGPPGTGKTMLAKAVATESGANFIAVRGPEI 524



 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 8/76 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DV 108
           +L  GPPG GKT LA+ +A E+G +F + +GP I     G+    L  + +        +
Sbjct: 216 ILLYGPPGNGKTLLARALANEVGASFYTINGPEIMSKFYGESEQRLREIFEEAQKNAPAI 275

Query: 109 LFIDEIHRLSIIVEEI 124
           +FIDEI  ++   EE+
Sbjct: 276 IFIDEIDSIAPKREEV 291


>gi|325095497|gb|EGC48807.1| ribosome biogenesis ATPase RIX7 [Ajellomyces capsulatus H88]
          Length = 751

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 34/72 (47%), Gaps = 3/72 (4%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           ADI  L     E  T  VE   N  ++   A+    A   VL  GPPG GKT LA+ VA 
Sbjct: 490 ADIGALSGVRDELATAIVEPIRNPDIY---ARVGITAPTGVLLWGPPGCGKTLLAKAVAN 546

Query: 77  ELGVNFRSTSGP 88
           E   NF S  GP
Sbjct: 547 ESRANFISVKGP 558



 Score = 38.9 bits (89), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL  GPPG GKT +A   A ELGV F + S P I    +G+    L    D        +
Sbjct: 214 VLLHGPPGCGKTMIANAFAAELGVPFIAISAPSIVSGMSGESEKALREHFDEAKKVAPCL 273

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 274 IFIDEIDAIT 283


>gi|322800491|gb|EFZ21495.1| hypothetical protein SINV_13651 [Solenopsis invicta]
          Length = 723

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL VGPPG GKT LA+ VA E GV F   +GP
Sbjct: 323 VLLVGPPGTGKTLLARAVAGEAGVPFFHVAGP 354


>gi|269986895|gb|EEZ93171.1| Microtubule-severing ATPase [Candidatus Parvarchaeum acidiphilum
           ARMAN-4]
          Length = 763

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 8/75 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDR------DV 108
           VL  GPPG GKT LA+ VA E   +F + +GP V++K  GD    L  + D        +
Sbjct: 250 VLLYGPPGTGKTLLARAVADESEAHFITINGPEVMSKWVGDAEKKLREIFDDAEKNAPSI 309

Query: 109 LFIDEIHRLSIIVEE 123
           +FIDEI  ++   EE
Sbjct: 310 IFIDEIDAIATKREE 324



 Score = 40.0 bits (92), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           +L  GPPG GKT LA+ VA E   NF +  GP I     G+    +  + D+       +
Sbjct: 524 ILLYGPPGTGKTLLARAVAHETESNFIAIKGPEIYNKYVGESEKRIREIFDKARQVSPSI 583

Query: 109 LFIDEIHRLS 118
           +FIDE+  ++
Sbjct: 584 IFIDELDSIA 593


>gi|254560086|ref|YP_003067181.1| protease, ATP-dependent zinc-metallo [Methylobacterium extorquens
           DM4]
 gi|254267364|emb|CAX23199.1| protease, ATP-dependent zinc-metallo [Methylobacterium extorquens
           DM4]
          Length = 620

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 39/70 (55%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           VL VGPPG GKT LA+ VA E GV F S SG    +   G  AA + +L ++       +
Sbjct: 200 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEMFVGVGAARVRDLFEQARQRAPAI 259

Query: 109 LFIDEIHRLS 118
           +FIDE+  L 
Sbjct: 260 IFIDELDALG 269


>gi|271970341|ref|YP_003344537.1| microtubule-severing ATPase [Streptosporangium roseum DSM 43021]
 gi|270513516|gb|ACZ91794.1| Microtubule-severing ATPase [Streptosporangium roseum DSM 43021]
          Length = 656

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 34/59 (57%), Gaps = 6/59 (10%)

Query: 34  VEACSNLKVFIEAAKARAEAL-----DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           +E    +K F++A  A+ +A+       VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 173 IEELQEIKEFLQAP-AKFQAIGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISG 230


>gi|224003639|ref|XP_002291491.1| atp-dependent serine protease [Thalassiosira pseudonana CCMP1335]
 gi|220973267|gb|EED91598.1| atp-dependent serine protease [Thalassiosira pseudonana CCMP1335]
          Length = 837

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 85/210 (40%), Gaps = 37/210 (17%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTL 70
            ++E+ DIS  R     +  G  E    +  FI   K +      +L   GPPG GKT++
Sbjct: 339 TTKENFDISDARTVLDRDHYGMDEVKETILQFIAVGKLKGSVQGKILCLAGPPGTGKTSI 398

Query: 71  AQVVARELGVNF------------------RSTSGPVIAKAGDLAALLTNLEDRDVLFID 112
           A+ VA  LG  F                  R+  G +  K   +  L +      ++ ID
Sbjct: 399 AESVAEALGRKFFRFSVGGMSDVSEIKGHRRTYVGAMPGKI--IQCLKSTGSSNPLVLID 456

Query: 113 EIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164
           EI +L        +  + E+L P+      D  + + P      +++S+   +     + 
Sbjct: 457 EIDKLGRDFRGDPASALLEVLDPSQNSTFRDHFI-DAP------VDISKVLFMCTANELD 509

Query: 165 LLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
            +  PL DR  + IRL+ Y++ +   I Q+
Sbjct: 510 AIPGPLLDRMEV-IRLSGYDVPEKLEIAQQ 538


>gi|158334484|ref|YP_001515656.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris
           marina MBIC11017]
 gi|158304725|gb|ABW26342.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris
           marina MBIC11017]
          Length = 629

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 15/104 (14%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  E+ + L+  +E  K+        A+    VL VGPPG GKT +A+ VA E 
Sbjct: 168 TFDDVAGVEESKTELEEIVEFLKSPQRFTEIGAKIPKGVLLVGPPGTGKTLMAKAVAGEA 227

Query: 79  GVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEI 114
           GV F S SG    +   G  AA + +L ++       ++FIDE+
Sbjct: 228 GVPFFSISGSEFVELFVGTGAARVRDLFEQAKKKAPCIIFIDEL 271


>gi|154288250|ref|XP_001544920.1| ribosome biogenesis ATPase RIX7 [Ajellomyces capsulatus NAm1]
 gi|150408561|gb|EDN04102.1| ribosome biogenesis ATPase RIX7 [Ajellomyces capsulatus NAm1]
          Length = 712

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 34/72 (47%), Gaps = 3/72 (4%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           ADI  L     E  T  VE   N  ++   A+    A   VL  GPPG GKT LA+ VA 
Sbjct: 451 ADIGALSGVRDELATAIVEPIRNPDIY---ARVGITAPTGVLLWGPPGCGKTLLAKAVAN 507

Query: 77  ELGVNFRSTSGP 88
           E   NF S  GP
Sbjct: 508 ESRANFISVKGP 519



 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL  GPPG GKT +A   A ELGV F + S P I
Sbjct: 214 VLLHGPPGCGKTMIANAFAAELGVPFIAISAPSI 247


>gi|146339824|ref|YP_001204872.1| cell division protein FtsH-like protein [Bradyrhizobium sp. ORS278]
 gi|146192630|emb|CAL76635.1| Cell division protein ftsH homolog (ATP-dependent zinc-metallo
           protease) [Bradyrhizobium sp. ORS278]
          Length = 615

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           VL VGPPG GKT LA+ VA E GV F S SG    +   G  AA + +L ++       +
Sbjct: 195 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEMFVGVGAARVRDLFEQARAKAPAI 254

Query: 109 LFIDEIHRL 117
           +FIDE+  L
Sbjct: 255 IFIDELDAL 263


>gi|77164885|ref|YP_343410.1| peptidase S16, ATP-dependent protease La [Nitrosococcus oceani ATCC
           19707]
 gi|254434556|ref|ZP_05048064.1| ATP-dependent protease La [Nitrosococcus oceani AFC27]
 gi|123594373|sp|Q3JBB6|LON_NITOC RecName: Full=Lon protease; AltName: Full=ATP-dependent protease La
 gi|76883199|gb|ABA57880.1| Peptidase S16, ATP-dependent protease La [Nitrosococcus oceani ATCC
           19707]
 gi|207090889|gb|EDZ68160.1| ATP-dependent protease La [Nitrosococcus oceani AFC27]
          Length = 772

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 91/240 (37%), Gaps = 57/240 (23%)

Query: 48  KARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDL---------- 96
           K   EA   +L FVGPPG+GKT++ Q +AR LG  F   S   +    +L          
Sbjct: 338 KLNPEAKSPILCFVGPPGVGKTSVGQSMARALGRKFERMSLGGLHDESELRGHRRTYIGA 397

Query: 97  ------AALLTNLEDRDVLFIDEIHRL--------SIIVEEILYPA----MEDFQLDLMV 138
                  A+        +L +DEI +L        +  + EIL PA      D  LDL  
Sbjct: 398 MPGRIIRAIRRTGYQNPLLMLDEIDKLGRDFRGDPAAALLEILDPAQNAEFHDNYLDL-- 455

Query: 139 GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR---- 194
                      +LS+   +     +  +  PL DR  I +RL  Y  E+ + I +R    
Sbjct: 456 ---------PFDLSKIFFVTTANTLDTIPRPLLDRMEI-LRLPGYSDEEKQHIARRYLIG 505

Query: 195 ------GAKLTGLAVTDEAACEIAMRS------RGTPRIAGRLLRRVRDFAEVAHAKTIT 242
                 G     L++ DE    +  R       R   R+ GR+ R+V         + +T
Sbjct: 506 RQIREAGLSEIQLSIPDETLSYLIRRYTREAGVRELERMLGRIARKVATQVATGQTQPVT 565


>gi|331697323|ref|YP_004333562.1| Shikimate kinase [Pseudonocardia dioxanivorans CB1190]
 gi|326952012|gb|AEA25709.1| Shikimate kinase [Pseudonocardia dioxanivorans CB1190]
          Length = 206

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 18/27 (66%), Positives = 22/27 (81%)

Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNF 82
           V+FVGPPG GK+T+ +VVAR LGV F
Sbjct: 7  SVVFVGPPGSGKSTVGKVVARRLGVAF 33


>gi|323344884|ref|ZP_08085108.1| ATP-dependent metalloprotease FtsH [Prevotella oralis ATCC 33269]
 gi|323094154|gb|EFZ36731.1| ATP-dependent metalloprotease FtsH [Prevotella oralis ATCC 33269]
          Length = 678

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 95/222 (42%), Gaps = 38/222 (17%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VL 109
           L VGPPG GKT LA+ VA E GV F S SG       V   A  +  +    +++   ++
Sbjct: 234 LLVGPPGTGKTLLAKAVAGEAGVPFFSMSGSDFVEMFVGVGASRVRDVFHQAKEKAPCII 293

Query: 110 FIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINL-----------SRFTLIA 158
           FIDEI  +     +   P+M           G   R   +N            S   ++A
Sbjct: 294 FIDEIDAVGRARSK--NPSM----------GGNDERENTLNALLTEMDGFGTNSGVIVLA 341

Query: 159 ATTRVGLLTNPL--QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSR 216
           AT R  +L   L    RF   I ++  ++++ K I Q   K     V  + + +I   +R
Sbjct: 342 ATNRADMLDKALLRAGRFDRQINVDLPDLQERKEIFQVHLK----PVKTDNSLDIDFLAR 397

Query: 217 GTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKM 258
            TP  +G  +  V + A +  A+  ++ ++    L  A+D++
Sbjct: 398 QTPGFSGADIANVCNEAALIAARHDSKTVSKQDFLD-AVDRI 438


>gi|310643603|ref|YP_003948361.1| ATP-dependent protease la-like protein [Paenibacillus polymyxa SC2]
 gi|309248553|gb|ADO58120.1| ATP-dependent protease La-like protein [Paenibacillus polymyxa SC2]
          Length = 634

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 5/62 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP TL++  GQ +    LK  + +A  +     HV+  GPPG+GKT  A+VV  E   N 
Sbjct: 123 RPATLQDIVGQKDGLRALKAALCSANPQ-----HVIIYGPPGVGKTAAARVVLEEAKKNQ 177

Query: 83  RS 84
            S
Sbjct: 178 SS 179


>gi|307110220|gb|EFN58456.1| hypothetical protein CHLNCDRAFT_48527 [Chlorella variabilis]
          Length = 293

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 12/75 (16%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          +   RPR++ E   Q E    L+  + +       L H+LF GPPG GKTT A  + R+L
Sbjct: 7  VEKYRPRSIGEVAHQEEVVQTLQHALSSGN-----LPHLLFYGPPGTGKTTSALAIVRQL 61

Query: 79 GVNFRSTSGPVIAKA 93
                  GP + KA
Sbjct: 62 -------FGPELCKA 69


>gi|291543931|emb|CBL17040.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Ruminococcus
           sp. 18P13]
          Length = 421

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           +VL +GP G+GKT LAQ +AR L V F       I +AG +   + N+            
Sbjct: 115 NVLLLGPTGVGKTFLAQTLARTLDVPFAIADATTITEAGYVGDDVENVLLRLIQAANYDV 174

Query: 104 --EDRDVLFIDEIHRLS 118
              +R +++IDEI +++
Sbjct: 175 EAAERGIIYIDEIDKIA 191


>gi|284161924|ref|YP_003400547.1| ATPase AAA [Archaeoglobus profundus DSM 5631]
 gi|284011921|gb|ADB57874.1| AAA family ATPase, CDC48 subfamily [Archaeoglobus profundus DSM
           5631]
          Length = 1217

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 44/89 (49%), Gaps = 8/89 (8%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK------AGDLAALLTNLEDRDVL 109
           +L  GPPG GKT LA+ VA E   NF S  GP +++K       GD   L        VL
Sbjct: 550 ILLYGPPGTGKTLLAKAVANEANANFISVKGPELLSKWVGESITGDEIVLAKVNGKLKVL 609

Query: 110 FIDEIHRLSIIVEEILYPAMEDFQLDLMV 138
             +E++   +  EEI  P +  F+ D +V
Sbjct: 610 TAEELYNAWMNGEEIEIPCIR-FESDEVV 637



 Score = 39.7 bits (91), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL  GPPG GKT +A+ VA E+  +F   SGP I
Sbjct: 219 VLLYGPPGTGKTLIAKAVANEVDAHFIPVSGPEI 252


>gi|269792563|ref|YP_003317467.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269100198|gb|ACZ19185.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 429

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           +VL VGP G GKT LAQ +AR L V F       + +AG    D+  +L  L        
Sbjct: 123 NVLLVGPTGSGKTLLAQTLARLLKVPFAIADATTLTEAGYVGEDVENILVRLLQAADYDV 182

Query: 104 --EDRDVLFIDEIHRLS 118
              +R +++IDEI ++S
Sbjct: 183 KAAERGIIYIDEIDKIS 199


>gi|119872197|ref|YP_930204.1| AAA family ATPase, CDC48 subfamily protein [Pyrobaculum islandicum
           DSM 4184]
 gi|119673605|gb|ABL87861.1| AAA family ATPase, CDC48 subfamily [Pyrobaculum islandicum DSM
           4184]
          Length = 731

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLAALLTNLEDR------DV 108
           +L  GPPG GKT LA+ VA E G NF +  GP I     G+   ++  +  +       V
Sbjct: 491 ILLFGPPGTGKTLLAKAVATESGANFIAVRGPEIFSKWVGESEKMVREIFRKARMAAPAV 550

Query: 109 LFIDEIHRLS 118
           +FIDE+  L+
Sbjct: 551 IFIDEVDALA 560



 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 16/115 (13%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
           T E+     +A   ++  +E      E   H        +L +GPPG GKT LA+ VA E
Sbjct: 177 TWEDIGDLEDAKQKIRELVELPLRHPELFKHLGIEPPKGILLIGPPGTGKTLLAKAVANE 236

Query: 78  LGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DVLFIDEIHRLSIIVEEI 124
               F + +GP I     G+  A L  + +        ++FIDEI  ++   EE+
Sbjct: 237 ANAYFVAINGPEIMSKYYGESEARLREIFEEAKKNAPAIIFIDEIDAIAPKREEV 291


>gi|161525463|ref|YP_001580475.1| ATP-dependent metalloprotease FtsH [Burkholderia multivorans ATCC
           17616]
 gi|189349804|ref|YP_001945432.1| cell division protease [Burkholderia multivorans ATCC 17616]
 gi|160342892|gb|ABX15978.1| ATP-dependent metalloprotease FtsH [Burkholderia multivorans ATCC
           17616]
 gi|189333826|dbj|BAG42896.1| cell division protease [Burkholderia multivorans ATCC 17616]
          Length = 615

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           VL VGPPG GKT LA+ VA E GV F S SG    +   G  AA + +L ++       +
Sbjct: 193 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEMFVGVGAARVRDLFEQARGQAPAI 252

Query: 109 LFIDEIHRL 117
           +FIDE+  L
Sbjct: 253 IFIDELDAL 261


>gi|118431889|ref|NP_148637.2| cell division protein CDC48 [Aeropyrum pernix K1]
 gi|116063212|dbj|BAA81490.2| cell division control protein 48, AAA family [Aeropyrum pernix K1]
          Length = 737

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 20/34 (58%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL  GPPG GKT LA+ VA E G NF +  GP I
Sbjct: 498 VLLFGPPGTGKTLLAKAVATESGANFIAVRGPEI 531



 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DV 108
           +L  GPPG GKT LA+ VA E    F S +GP I     G+    L  + +        +
Sbjct: 225 ILLYGPPGTGKTLLAKAVANEADAYFISINGPEIMSKYYGESEQRLREIFEEAKKNAPSI 284

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 285 IFIDEIDAIA 294


>gi|167949880|ref|ZP_02536954.1| ATP-dependent protease ATP-binding subunit [Endoriftia persephone
           'Hot96_1+Hot96_2']
 gi|110589388|gb|ABG77203.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Endoriftia
           persephone 'Hot96_1+Hot96_2']
          Length = 329

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 29/135 (21%)

Query: 13  SQEDADISLLRP----RTLEEFT-GQVEACSNLKVFIEAAKARAEAL----------DHV 57
           S E +  SL RP    +TL+++  GQ  A   L V +     R E+L           ++
Sbjct: 57  SGEKSSDSLPRPHEINKTLDQYVIGQQRAKKVLSVAVYNHYKRLESLGKESDIELAKSNI 116

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDV-- 108
           L +GP G GKT LA+ +AR L V F       + +AG +   + N+        D DV  
Sbjct: 117 LLIGPTGSGKTLLAETLARLLDVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEK 176

Query: 109 -----LFIDEIHRLS 118
                ++IDEI ++S
Sbjct: 177 AQTGIVYIDEIDKIS 191


>gi|327311898|ref|YP_004338795.1| TBP-interacting protein TIP49 [Thermoproteus uzoniensis 768-20]
 gi|326948377|gb|AEA13483.1| TBP-interacting protein TIP49 [Thermoproteus uzoniensis 768-20]
          Length = 458

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 36/68 (52%), Gaps = 6/68 (8%)

Query: 30  FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPV 89
           F GQ EA     + ++  KA   A   VL VGPPG GKT LA  +AREL     S   P 
Sbjct: 46  FVGQTEAREAAYMVVKMIKAGKFAGKGVLIVGPPGTGKTALAIGIAREL-----SEDTPF 100

Query: 90  IA-KAGDL 96
           +A  AG++
Sbjct: 101 VALSAGEI 108


>gi|326513256|dbj|BAK06868.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 782

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKTTLA  +A E GV F   S P +
Sbjct: 238 ILLHGPPGCGKTTLAHAIANETGVPFYKISAPEV 271



 Score = 38.9 bits (89), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 8/69 (11%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLT--NLEDRDVL 109
           L  GPPG GKT +A+ VA + G NF    GP      V     ++  + T   +    +L
Sbjct: 543 LLFGPPGCGKTLIAKAVAHDAGANFIHIKGPELLNKYVGESESEVRKIFTRARINSPCIL 602

Query: 110 FIDEIHRLS 118
           F DEI  L+
Sbjct: 603 FFDEIDALT 611


>gi|319954406|ref|YP_004165673.1| DNA polymerase iii, subunits gamma and tau [Cellulophaga algicola
           DSM 14237]
 gi|319423066|gb|ADV50175.1| DNA polymerase III, subunits gamma and tau [Cellulophaga algicola
           DSM 14237]
          Length = 617

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 116/284 (40%), Gaps = 47/284 (16%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T ++  GQ    + L   IE     A+AL   LF GP G+GKTT A+++A+++  + 
Sbjct: 12  RPQTFKDVVGQQAITNTLLNAIENNHL-AQAL---LFCGPRGVGKTTCARILAKKINEDG 67

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS--------------IIVEEILYPA 128
              S        D A  +  L+      +D+I  L+               I++E+   +
Sbjct: 68  SQHSD------EDYAFNIFELDAASNNSVDDIRSLTDQVRIPPQVGKYKVYIIDEVHMLS 121

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI--E 186
              F   L   E P   ++         I ATT    +   +  R  I    +F  I  +
Sbjct: 122 QSAFNAFLKTLEEPPKHAI--------FILATTEKHKIIPTILSRCQI---FDFKRITVK 170

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           D  T ++  A+  G+   D+A   IA ++ G  R A  +  RV  FA     K +TR+  
Sbjct: 171 DAATYLKYIAENQGIEAEDDALHIIAQKADGAMRDALSIFDRVVSFA----GKKLTRKAV 226

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGI-ETISAGL 289
              L  L  D   F   DL    ++A N  G  V   ET++ G 
Sbjct: 227 TENLNVLDYDTY-FAATDL----ILAHNIPGLLVLFNETLAKGF 265


>gi|307243867|ref|ZP_07525992.1| ATP-dependent metallopeptidase HflB [Peptostreptococcus stomatis
           DSM 17678]
 gi|306492689|gb|EFM64717.1| ATP-dependent metallopeptidase HflB [Peptostreptococcus stomatis
           DSM 17678]
          Length = 631

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 21/30 (70%), Positives = 21/30 (70%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           L VGPPG GKT LAQ VA E GV F S SG
Sbjct: 202 LLVGPPGTGKTLLAQAVAGEAGVPFFSISG 231


>gi|291244804|ref|XP_002742285.1| PREDICTED: replication factor C 4-like [Saccoglossus kowalevskii]
          Length = 288

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 7/68 (10%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +   RP++++E   Q E  + LK  IE +      L ++LF GPPG GKT+    VAREL
Sbjct: 38  VEKYRPKSVDEVAFQDEVVAVLKKSIEGSD-----LPNLLFYGPPGTGKTSTILAVAREL 92

Query: 79  GVN--FRS 84
             N  FR+
Sbjct: 93  FGNEMFRT 100


>gi|269469209|gb|EEZ80743.1| ATP-dependent protease Clp, ATPase subunit [uncultured SUP05
           cluster bacterium]
          Length = 418

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +AR L V F       + +AG    D+  ++ +L        
Sbjct: 109 NILMIGPTGSGKTLLAQTLARILDVPFTVADATTLTEAGYVGDDVENVIKSLLSRCDFDP 168

Query: 104 --EDRDVLFIDEIHRLS 118
              +R ++FIDEI ++S
Sbjct: 169 ERAERGIIFIDEIDKIS 185


>gi|255717520|ref|XP_002555041.1| KLTH0F19646p [Lachancea thermotolerans]
 gi|238936424|emb|CAR24604.1| KLTH0F19646p [Lachancea thermotolerans]
          Length = 1044

 Score = 42.0 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 17/32 (53%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +LF GPPG GKT LA+ +A    +NF S  GP
Sbjct: 782 ILFYGPPGTGKTLLAKAIATNFSLNFFSVKGP 813


>gi|298528951|ref|ZP_07016354.1| ATP-dependent protease La [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298510387|gb|EFI34290.1| ATP-dependent protease La [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 815

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 74/188 (39%), Gaps = 59/188 (31%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           +  VGPPG+GKT+LA+ VAR     F R + G V  +A              G +   L 
Sbjct: 361 LCLVGPPGVGKTSLAKSVARATQREFIRLSLGGVRDEAEIRGHRRTYVGAMPGKILQSLK 420

Query: 102 NLEDRDVLF-IDEIHRLSIIVE--------EILYP----AMEDFQLDLMVGEGPSARSVK 148
            ++  + +F +DE+ ++S+           E+L P    A  D  LDL            
Sbjct: 421 RVDTNNPVFCLDEVDKMSMDFRGDPSAALLEVLDPEQNSAFSDHYLDL-----------D 469

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGI--------------------PIRLNFYEIEDL 188
            +LS    I     +  +  PLQDR  I                    P +LN++ +ED 
Sbjct: 470 YDLSNIFFITTANYLQAIPAPLQDRMEIIKLPGYLETEKNRIARHFIWPKQLNYHGLEDS 529

Query: 189 KTIVQRGA 196
           K  +  GA
Sbjct: 530 KVSISEGA 537


>gi|168334113|ref|ZP_02692326.1| ATP-dependent Zn protease [Epulopiscium sp. 'N.t. morphotype B']
          Length = 670

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 202 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 232


>gi|115402109|ref|XP_001217131.1| ribosome biogenesis ATPase RIX7 [Aspergillus terreus NIH2624]
 gi|114188977|gb|EAU30677.1| ribosome biogenesis ATPase RIX7 [Aspergillus terreus NIH2624]
          Length = 514

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 50/104 (48%), Gaps = 21/104 (20%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDL-AALLTNLEDRD-----V 108
           VL  GPPG GKT +A   A ELGV F S S P I    +G+   AL  + E+       +
Sbjct: 147 VLLHGPPGCGKTMIANAFAAELGVPFISISAPSIVSGMSGESEKALREHFEEAKRLAPCL 206

Query: 109 LFIDEIHRLSI------------IVEEILYPAMEDFQLDLMVGE 140
           +FIDEI  ++             IV ++L   M+D  LD   G+
Sbjct: 207 IFIDEIDAITPKRESAQREMEKRIVAQLLT-CMDDLALDKTDGK 249


>gi|29841325|gb|AAP06357.1| similar to GenBank Accession Number BC003335 activator 1; 37 kDa
          subunit; replication factor C subunit)(RFC37)in Mus
          musculus [Schistosoma japonicum]
          Length = 364

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+T++E   Q E  S L+  I  +      L ++LF GPPG GKT+L   +AR+L
Sbjct: 32 RPKTIDEVAYQTEVVSVLRRCIGGSD-----LPNLLFYGPPGTGKTSLILALARQL 82


>gi|74203414|dbj|BAE20868.1| unnamed protein product [Mus musculus]
          Length = 953

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 89/208 (42%), Gaps = 33/208 (15%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTL 70
           +S E+ D++  +    E+  G  +    +  FI  ++ R      +L F GPPG+GKT++
Sbjct: 466 LSDENLDLARAQAVLEEDHYGMEDVKKRVLEFIAVSQLRGSTQGKILCFHGPPGVGKTSI 525

Query: 71  AQVVARELGVN-FRSTSGP--------------VIAKAGDLAALLTNLEDRDVL-FIDEI 114
           A+ +AR LG   FR + G               V A  G +   L   +  + L  IDE+
Sbjct: 526 ARSIARALGREYFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLVLIDEV 585

Query: 115 HRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
            ++        S  + E+L P      LD  +        V ++LS+   I     +  +
Sbjct: 586 DKIGRGYQGDPSSALLELLDPEQNANFLDHYL-------DVPVDLSKVLFICTANVIDTI 638

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
             PL+DR  + I ++ Y  ++   I +R
Sbjct: 639 PEPLRDRMEM-INVSGYVAQEKLAIAER 665


>gi|167038506|ref|YP_001666084.1| microtubule-severing ATPase [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|167038751|ref|YP_001661736.1| microtubule-severing ATPase [Thermoanaerobacter sp. X514]
 gi|256751376|ref|ZP_05492255.1| Microtubule-severing ATPase [Thermoanaerobacter ethanolicus CCSD1]
 gi|300913664|ref|ZP_07130981.1| Vesicle-fusing ATPase [Thermoanaerobacter sp. X561]
 gi|307723321|ref|YP_003903072.1| Vesicle-fusing ATPase [Thermoanaerobacter sp. X513]
 gi|320116902|ref|YP_004187061.1| Vesicle-fusing ATPase [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|166852991|gb|ABY91400.1| Microtubule-severing ATPase [Thermoanaerobacter sp. X514]
 gi|166857340|gb|ABY95748.1| Microtubule-severing ATPase [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|256749758|gb|EEU62783.1| Microtubule-severing ATPase [Thermoanaerobacter ethanolicus CCSD1]
 gi|300890349|gb|EFK85494.1| Vesicle-fusing ATPase [Thermoanaerobacter sp. X561]
 gi|307580382|gb|ADN53781.1| Vesicle-fusing ATPase [Thermoanaerobacter sp. X513]
 gi|319929993|gb|ADV80678.1| Vesicle-fusing ATPase [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 490

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 68/137 (49%), Gaps = 29/137 (21%)

Query: 1   MMDREGLL--SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIE-------AAKARA 51
           +++ +GL+  S+N+ + +++IS       E+  GQ  A S LK  ++        +K   
Sbjct: 40  IIENKGLIPGSKNIIKPESEISF------EDIGGQKTAISELKEALDFVINKEKLSKMGI 93

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNL------ 103
             +  +L  GPPG GKT LA+  A+    +F +TSG   +   AG  A  + NL      
Sbjct: 94  RPIKGILLTGPPGTGKTLLAKAAAKYTNSSFIATSGSEFIEMYAGVGAQRVRNLFETARN 153

Query: 104 ----EDRD--VLFIDEI 114
               E+++  ++FIDEI
Sbjct: 154 LARKENKNSAIIFIDEI 170


>gi|320547726|ref|ZP_08042011.1| cell division protein FtsH [Streptococcus equinus ATCC 9812]
 gi|320447801|gb|EFW88559.1| cell division protein FtsH [Streptococcus equinus ATCC 9812]
          Length = 657

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLED--RDV 108
           VL  GPPG GKT LA+ VA E GV F S SG       V   A  + +L  + +   R +
Sbjct: 223 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRSLFEDAKKAGRAI 282

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 283 IFIDEI 288


>gi|305663909|ref|YP_003860197.1| Adenylate kinase [Ignisphaera aggregans DSM 17230]
 gi|304378478|gb|ADM28317.1| Adenylate kinase [Ignisphaera aggregans DSM 17230]
          Length = 215

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 9/71 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPV---IAKAGDLAALLTNLEDRDVLFIDE 113
           ++F+GPPG+GK T A+++ ++ G+   ST       IAK  +L   +    +R +L  DE
Sbjct: 3   IVFIGPPGIGKGTYAKILNQKYGIPHISTGDIFREEIAKGSELGQKVKYYVERGLLVPDE 62

Query: 114 I------HRLS 118
           I      HRLS
Sbjct: 63  IVIEVIKHRLS 73


>gi|296421403|ref|XP_002840254.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295636469|emb|CAZ84445.1| unnamed protein product [Tuber melanosporum]
          Length = 372

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+ L + + Q    S LK  ++++      L H+LF GPPG GKT+    +A+EL
Sbjct: 41 RPKNLNDVSAQDHTISVLKRTLQSSN-----LPHMLFYGPPGTGKTSTVLALAKEL 91


>gi|269836808|ref|YP_003319036.1| ATP-dependent metalloprotease FtsH [Sphaerobacter thermophilus DSM
           20745]
 gi|310943090|sp|D1C1U7|FTSH1_SPHTD RecName: Full=ATP-dependent zinc metalloprotease FtsH 1
 gi|269786071|gb|ACZ38214.1| ATP-dependent metalloprotease FtsH [Sphaerobacter thermophilus DSM
           20745]
          Length = 653

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL VGPPG GKT L++ VA E GV F S SG    +   G  A+ + +L D+       +
Sbjct: 199 VLLVGPPGTGKTLLSRAVAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFDQAKRNAPCI 258

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 259 VFIDEI 264


>gi|221116027|ref|XP_002154784.1| PREDICTED: similar to predicted protein, partial [Hydra
           magnipapillata]
          Length = 322

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 5/68 (7%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           N    D  +   RP  L++     +    ++ FI   K     L H+LF GPPG GKT+ 
Sbjct: 116 NFHASDGWVEKYRPACLDDLISHKDIIDTIQKFISEGK-----LPHLLFYGPPGTGKTST 170

Query: 71  AQVVAREL 78
              VA++L
Sbjct: 171 ILAVAKQL 178


>gi|186470797|ref|YP_001862115.1| ATP-dependent metalloprotease FtsH [Burkholderia phymatum STM815]
 gi|310943122|sp|B2JVU2|FTSH_BURP8 RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|184197106|gb|ACC75069.1| ATP-dependent metalloprotease FtsH [Burkholderia phymatum STM815]
          Length = 645

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           VL VGPPG GKT LA+ VA E GV F S SG    +   G  AA + +L ++       +
Sbjct: 195 VLLVGPPGTGKTLLARAVAGEAGVAFFSISGSEFVEMFVGVGAARVRDLFEQARKHAPAI 254

Query: 109 LFIDEIHRL 117
           +FIDE+  L
Sbjct: 255 VFIDELDSL 263


>gi|328793565|ref|XP_392703.4| PREDICTED: ATP-dependent zinc metalloprotease YME1 homolog isoform
           1 [Apis mellifera]
          Length = 734

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL VGPPG GKT LA+ VA E GV F   +GP
Sbjct: 317 VLLVGPPGTGKTLLARAVAGEAGVPFFHAAGP 348


>gi|326935328|ref|XP_003213725.1| PREDICTED: cell cycle checkpoint protein RAD17-like, partial
           [Meleagris gallopavo]
          Length = 673

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 9/86 (10%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQ------VEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           RN SQ++  +   +P T  +   Q      VE    + +F    K     L   L  GP 
Sbjct: 74  RNQSQDEPWVDKYKPETQNDLAVQKKKIEEVETWLKMHIFRRQPKQGGCVL---LLTGPA 130

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPV 89
           G GKT   Q++AR+LGV  +  + P+
Sbjct: 131 GCGKTATVQILARDLGVQVQEWTNPI 156


>gi|302770164|ref|XP_002968501.1| hypothetical protein SELMODRAFT_89456 [Selaginella moellendorffii]
 gi|300164145|gb|EFJ30755.1| hypothetical protein SELMODRAFT_89456 [Selaginella moellendorffii]
          Length = 611

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 92/228 (40%), Gaps = 43/228 (18%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDR--- 106
           E +  +L  GPPG GK+ LA+ +A E  V F   S P  V   +G+  A L  L      
Sbjct: 39  EHMKALLLHGPPGCGKSLLAEAIANEASVPFFKVSAPEVVSGTSGESEAKLRTLFSEAFR 98

Query: 107 ---DVLFIDEIHRLSI------------IVEEILYPAMEDFQLDLMVGEGPSARSVKINL 151
               ++FIDE+  +              IV +++   M++        E     S K  L
Sbjct: 99  VAPAIIFIDEVDAICSKRESAQREMERRIVTQLMV-CMDEIDYAPRGSESEGGDSNK--L 155

Query: 152 SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEI 211
            R  +IAAT R   L   L+ RF   I L   ++ D K  +Q    LT LA       E 
Sbjct: 156 RRLLVIAATNRPEALDQALRRRFDREICL---KVPDEKARLQ---ILTVLASKLRLDGEF 209

Query: 212 AMR--SRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257
             +  +R TP   G            A  K +T+E   AA+ R+A  +
Sbjct: 210 DFKAIARRTPGFVG------------ADLKVLTKEAGVAAIRRIAAKR 245


>gi|284049192|ref|YP_003399531.1| ATP-dependent metalloprotease FtsH [Acidaminococcus fermentans DSM
           20731]
 gi|283953413|gb|ADB48216.1| ATP-dependent metalloprotease FtsH [Acidaminococcus fermentans DSM
           20731]
          Length = 635

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 57/123 (46%), Gaps = 15/123 (12%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAK--ARAEAL-----DHVLF 59
           ++S   S     I+    +T ++  GQ EA   L+  +      AR +A+       VL 
Sbjct: 146 MMSFGKSNAKVYIAAQTGKTFKDVAGQDEAKEALQEIVNYLHNPARYKAIGAVMPKGVLL 205

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFI 111
           VGPPG GKT LA+ VA E  V F S SG       V   A  +  L    +++   ++FI
Sbjct: 206 VGPPGTGKTLLAKAVAGEAKVPFFSISGSEFIEMFVGMGAARVRDLFKQAQEKAPCIVFI 265

Query: 112 DEI 114
           DEI
Sbjct: 266 DEI 268


>gi|313125585|ref|YP_004035849.1| ATPase AAA [Halogeometricum borinquense DSM 11551]
 gi|312291950|gb|ADQ66410.1| AAA family ATPase, CDC48 subfamily [Halogeometricum borinquense DSM
           11551]
          Length = 741

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 8/76 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNL------EDRDV 108
           VL  GPPG GKT LA+ VA E   +F S +GP +I+K  G+    L  +      E   +
Sbjct: 226 VLLHGPPGTGKTLLAKAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDAKEESPSI 285

Query: 109 LFIDEIHRLSIIVEEI 124
           +FIDE+  ++   E++
Sbjct: 286 IFIDELDSIAPKREDV 301



 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT +A+ VA E   NF S  GP
Sbjct: 499 VLLYGPPGTGKTLIAKAVANETNANFISVRGP 530


>gi|198276173|ref|ZP_03208704.1| hypothetical protein BACPLE_02362 [Bacteroides plebeius DSM 17135]
 gi|198270985|gb|EDY95255.1| hypothetical protein BACPLE_02362 [Bacteroides plebeius DSM 17135]
          Length = 393

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 71/145 (48%), Gaps = 30/145 (20%)

Query: 4   REGLLSRNVSQEDADISLL-RPRTLEEF-----TGQVEACSNLKVFIEAAKAR----AEA 53
           +E +  +   Q D ++S L +P+ ++EF      GQ +A   L V +     R     + 
Sbjct: 25  KEAMHHQGQGQTDLNLSELPKPKDIKEFLDQYVIGQDDAKRYLAVAVYNHYKRLLQPKDK 84

Query: 54  LD------HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLT-- 101
            D      +++ VG  G GKT LA+ +A+ L V F      V+ +AG    D+ ++LT  
Sbjct: 85  NDVEIEKSNIIMVGSTGTGKTLLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRL 144

Query: 102 ------NLE--DRDVLFIDEIHRLS 118
                 N+E  +R ++FIDEI +++
Sbjct: 145 LQVADYNVEEAERGIVFIDEIDKIA 169


>gi|66934628|gb|AAY58903.1| putative LON protease [Hyaloperonospora parasitica]
          Length = 725

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 58/266 (21%), Positives = 115/266 (43%), Gaps = 42/266 (15%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLA 71
           ++E+ D++  +    E+  G ++    +  F+  +K + +    ++ FVGPPG+GKT++ 
Sbjct: 414 TEENFDLAKAKQILNEDHYGLMDIKERVLEFVAVSKLKGDVQGKIICFVGPPGVGKTSIG 473

Query: 72  QVVARELGVN-FRSTSG--------------PVIAKAGDLAALLTNLEDRD-VLFIDEIH 115
           + +AR L    FR + G               V A  G +   L + +  + ++ IDEI 
Sbjct: 474 KSIARSLNREFFRFSVGGLSDVAEIKGHRRTYVGAMPGKIIQCLKSTQSSNPLILIDEID 533

Query: 116 RL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           +L        +  + E+L P+     +D  +        V ++LSR   I        + 
Sbjct: 534 KLGRGYQGDPASALLELLDPSQNSGFVDHYM-------DVPVDLSRVLFICTANVTDTIP 586

Query: 168 NPLQDRFGIPIRLNFYEIED-----LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
            PL DR  + +RL+ Y+  +      + +V R  + TGL  ++     + +       + 
Sbjct: 587 APLLDRMEV-LRLSGYDSPEKLAIAKEYLVPRAREKTGLEKSETTPESLGLTDDAIMALV 645

Query: 223 GRLLRR--VRDFAEVAHAKTITREIA 246
            +  R   VR+  +  H + I R++A
Sbjct: 646 KQYCRESGVRNLEK--HVEKIFRKVA 669


>gi|89901195|ref|YP_523666.1| ATP-dependent metalloprotease FtsH [Rhodoferax ferrireducens T118]
 gi|89345932|gb|ABD70135.1| FtsH-2 peptidase. Metallo peptidase. MEROPS family M41 [Rhodoferax
           ferrireducens T118]
          Length = 616

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           VL VGPPG GKT LA+ VA E GV F S SG    +   G  AA + +L ++       +
Sbjct: 192 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEMFVGVGAARVRDLFEQARAMAPAI 251

Query: 109 LFIDEIHRL 117
           +FIDE+  L
Sbjct: 252 IFIDELDAL 260


>gi|320352510|ref|YP_004193849.1| membrane protease FtsH catalytic subunit [Desulfobulbus propionicus
           DSM 2032]
 gi|320121012|gb|ADW16558.1| membrane protease FtsH catalytic subunit [Desulfobulbus propionicus
           DSM 2032]
          Length = 605

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           VL VGPPG GKT LA+ VA E GV F S SG    +   G  AA + +L ++       +
Sbjct: 194 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEMFVGVGAARVRDLFEQARKSAPAI 253

Query: 109 LFIDEIHRL 117
           +FIDE+  L
Sbjct: 254 IFIDELDAL 262


>gi|297569271|ref|YP_003690615.1| ATP-dependent protease La [Desulfurivibrio alkaliphilus AHT2]
 gi|296925186|gb|ADH85996.1| ATP-dependent protease La [Desulfurivibrio alkaliphilus AHT2]
          Length = 809

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 70/169 (41%), Gaps = 45/169 (26%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF------------------RSTSGPVIAKAGDLAA 98
           +  VGPPG+GKT++ + VAR +   F                  R+  G +  K   L A
Sbjct: 352 LCLVGPPGVGKTSICKSVARSMERRFQRLSLGGVRDEAEIRGHRRTYIGAMPGKI--LRA 409

Query: 99  LLTNLEDRDVLFIDEIHRLSI--------IVEEILYP----AMEDFQLDLMVGEGPSARS 146
           +        VL +DE+ ++S+         + E+L P    +  D  LDL          
Sbjct: 410 MQKAKVANPVLCLDEVDKMSMDFRGDPAAALLEVLDPEQNHSFSDHYLDL---------- 459

Query: 147 VKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
            + +LS    I     +  +  PLQDR  I IR+N Y  ED K  + RG
Sbjct: 460 -EYDLSDVFFITTANNLAAIPAPLQDRMEI-IRINGYTEED-KVNIARG 505


>gi|124806673|ref|XP_001350791.1| cell division protein FtsH, putative [Plasmodium falciparum 3D7]
 gi|23496919|gb|AAN36471.1|AE014850_36 cell division protein FtsH, putative [Plasmodium falciparum 3D7]
          Length = 880

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL VGPPG GKT LA+ VA E  V +  TSGP
Sbjct: 185 VLLVGPPGSGKTMLARAVATEANVPYIYTSGP 216


>gi|68074487|ref|XP_679159.1| cell division protein FtsH [Plasmodium berghei strain ANKA]
 gi|56499835|emb|CAI04925.1| cell division protein FtsH, putative [Plasmodium berghei]
          Length = 849

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL VGPPG GKT LA+ VA E  V +  TSGP
Sbjct: 188 VLLVGPPGSGKTMLARAVATEANVPYIYTSGP 219


>gi|82594547|ref|XP_725471.1| cell division protein FtsH [Plasmodium yoelii yoelii str. 17XNL]
 gi|23480490|gb|EAA17036.1| cell division protein ftsh homolog [Plasmodium yoelii yoelii]
          Length = 867

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL VGPPG GKT LA+ VA E  V +  TSGP
Sbjct: 200 VLLVGPPGSGKTMLARAVATEANVPYIYTSGP 231


>gi|226479998|emb|CAX73295.1| hypothetical protein [Schistosoma japonicum]
          Length = 364

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+T++E   Q E  S L+  I  +      L ++LF GPPG GKT+L   +AR+L
Sbjct: 32 RPKTIDEVAYQTEVVSVLRRCIGGSD-----LPNLLFYGPPGTGKTSLILALARQL 82


>gi|240274120|gb|EER37638.1| ribosome biogenesis ATPase RIX7 [Ajellomyces capsulatus H143]
          Length = 751

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 34/72 (47%), Gaps = 3/72 (4%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           ADI  L     E  T  VE   N  ++   A+    A   VL  GPPG GKT LA+ VA 
Sbjct: 490 ADIGALSGVRDELATAIVEPIRNPDIY---ARVGITAPTGVLLWGPPGCGKTLLAKAVAN 546

Query: 77  ELGVNFRSTSGP 88
           E   NF S  GP
Sbjct: 547 ESRANFISVKGP 558



 Score = 38.9 bits (89), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL  GPPG GKT +A   A ELGV F + S P I    +G+    L    D        +
Sbjct: 214 VLLHGPPGCGKTMIANAFAAELGVPFIAISAPSIVSGMSGESEKALREHFDEAKKVAPCL 273

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 274 IFIDEIDAIT 283


>gi|260949387|ref|XP_002618990.1| hypothetical protein CLUG_00149 [Clavispora lusitaniae ATCC 42720]
 gi|238846562|gb|EEQ36026.1| hypothetical protein CLUG_00149 [Clavispora lusitaniae ATCC 42720]
          Length = 1164

 Score = 42.0 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 17/32 (53%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +LF GPPG GKT LA+ +A    +NF S  GP
Sbjct: 851 ILFYGPPGTGKTLLAKAIATNFSLNFFSVKGP 882


>gi|222480132|ref|YP_002566369.1| AAA family ATPase, CDC48 subfamily [Halorubrum lacusprofundi ATCC
           49239]
 gi|222453034|gb|ACM57299.1| AAA family ATPase, CDC48 subfamily [Halorubrum lacusprofundi ATCC
           49239]
          Length = 740

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 8/71 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
           + ++  G  EA   ++  +E   +  E  D         VL  GPPG GKT +A+ VA E
Sbjct: 460 SWDDVGGLSEAQQQVQESVEWPLSSPEKFDRMGVDPPKGVLLYGPPGTGKTLMAKAVANE 519

Query: 78  LGVNFRSTSGP 88
              NF S  GP
Sbjct: 520 TNANFISVRGP 530



 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 8/76 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNL------EDRDV 108
           VL  GPPG GKT LA+ VA E   +F S +GP +I+K  G+    L  +      E   +
Sbjct: 226 VLLHGPPGTGKTLLAKAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDAKEESPSI 285

Query: 109 LFIDEIHRLSIIVEEI 124
           +FIDE+  ++   E++
Sbjct: 286 IFIDELDSIAPKREDV 301


>gi|149247677|ref|XP_001528247.1| peroxisomal biogenesis factor 6 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146448201|gb|EDK42589.1| peroxisomal biogenesis factor 6 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 1242

 Score = 42.0 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 17/32 (53%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +LF GPPG GKT LA+ +A    +NF S  GP
Sbjct: 883 ILFYGPPGTGKTLLAKAIATNFSLNFFSVKGP 914


>gi|70606628|ref|YP_255498.1| ATP-dependent Zn protease [Sulfolobus acidocaldarius DSM 639]
 gi|68567276|gb|AAY80205.1| ATP-dependent Zn protease [Sulfolobus acidocaldarius DSM 639]
          Length = 747

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT LA+ VA E G NF +  GP I
Sbjct: 491 ILLFGPPGTGKTMLAKAVATESGANFIAVRGPEI 524



 Score = 39.7 bits (91), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 8/76 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GD----LAALLTNLEDR--DV 108
           +L  GPPG GKT LA+ +A E+G  F + +GP I     G+    +  +    E+    +
Sbjct: 216 ILLYGPPGTGKTLLARALANEIGAYFITVNGPEIMSKFYGESEQRIREIFKEAEENAPSI 275

Query: 109 LFIDEIHRLSIIVEEI 124
           +FIDEI  ++   E++
Sbjct: 276 IFIDEIDAIAPKREDV 291


>gi|55378303|ref|YP_136153.1| cell division control protein 48 [Haloarcula marismortui ATCC
           43049]
 gi|55231028|gb|AAV46447.1| cell division control protein 48 [Haloarcula marismortui ATCC
           43049]
          Length = 741

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 8/76 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNL------EDRDV 108
           VL  GPPG GKT LA+ VA E   +F S +GP +I+K  G+    L  +      E   +
Sbjct: 226 VLLHGPPGTGKTLLAKAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDASEESPSI 285

Query: 109 LFIDEIHRLSIIVEEI 124
           +FIDE+  ++   E++
Sbjct: 286 IFIDELDSIAPKREDV 301



 Score = 40.0 bits (92), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT +A+ VA E   NF S  GP
Sbjct: 499 VLLYGPPGTGKTLMAKAVANETDANFISVRGP 530


>gi|332800065|ref|YP_004461564.1| ATP-dependent metalloprotease FtsH [Tepidanaerobacter sp. Re1]
 gi|332697800|gb|AEE92257.1| ATP-dependent metalloprotease FtsH [Tepidanaerobacter sp. Re1]
          Length = 599

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 38/66 (57%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL VGPPG GKT LA+ VA E GV F S SG    +   G  AA + +L ++       +
Sbjct: 193 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGAARVRDLFEQAKKNSPCI 252

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 253 VFIDEI 258


>gi|322372274|ref|ZP_08046815.1| cell division control protein 48 [Haladaptatus paucihalophilus
           DX253]
 gi|320548283|gb|EFW89956.1| cell division control protein 48 [Haladaptatus paucihalophilus
           DX253]
          Length = 740

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 8/76 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNL------EDRDV 108
           VL  GPPG GKT LA+ VA E   +F S +GP +I+K  G+    L  +      E   +
Sbjct: 226 VLLHGPPGTGKTLLAKAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDAAEESPSI 285

Query: 109 LFIDEIHRLSIIVEEI 124
           +FIDE+  ++   E++
Sbjct: 286 IFIDELDSIAPKREDV 301



 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 8/71 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
           + ++  G  +A S +K  +E   +  E  +         VL  GPPG GKT +A+ VA E
Sbjct: 460 SWDDVGGLEDAKSQVKESVEWPLSSPEKFERMGIEPPSGVLLYGPPGTGKTLMAKAVANE 519

Query: 78  LGVNFRSTSGP 88
              NF S  GP
Sbjct: 520 TNANFISVRGP 530


>gi|319411987|emb|CBQ74030.1| related to AFG2-ATPase of the CDC48/PAS1/SEC18 (AAA) family
           [Sporisorium reilianum]
          Length = 862

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL------EDRDV 108
           VL  GPPG GKT+LA+ VA   G ++ + +GP ++ A  G+  + L N+      +   +
Sbjct: 284 VLLYGPPGTGKTSLARAVAAATGSSYLTINGPELSSAFHGETESKLRNIFREARRKSPCI 343

Query: 109 LFIDEIHRLS 118
           + IDEI  L+
Sbjct: 344 IIIDEIDALA 353



 Score = 37.7 bits (86), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 16/32 (50%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG  KT +A+ +A E G+NF +  GP
Sbjct: 635 VLLYGPPGCSKTLIARALATESGLNFLAVKGP 666


>gi|310831096|ref|YP_003969739.1| putative AAA+ superfamily ATPase [Cafeteria roenbergensis virus
           BV-PW1]
 gi|309386280|gb|ADO67140.1| putative AAA+ superfamily ATPase [Cafeteria roenbergensis virus
           BV-PW1]
          Length = 469

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 14/77 (18%)

Query: 54  LDHVLFVGPPGLGKTTLAQVVARELGVN--FRSTSGPVIAKAGDL-AALL-------TNL 103
           L+H++ +GPPG GKT+++ ++  E+  N  F S    + AK  DL AA L        N+
Sbjct: 225 LNHIVIMGPPGTGKTSVSHIIG-EIYYNLGFLSKGTFIKAKRSDLIAAYLGQTAIKTQNM 283

Query: 104 EDR---DVLFIDEIHRL 117
            D+    +LFIDE++ L
Sbjct: 284 IDKAEGGILFIDEVYSL 300


>gi|307214991|gb|EFN89836.1| Protein YME1-like protein [Harpegnathos saltator]
          Length = 776

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL VGPPG GKT LA+ VA E GV F   +GP
Sbjct: 359 VLLVGPPGTGKTLLARAVAGEAGVPFFHVAGP 390


>gi|302820532|ref|XP_002991933.1| hypothetical protein SELMODRAFT_513 [Selaginella moellendorffii]
 gi|300140319|gb|EFJ07044.1| hypothetical protein SELMODRAFT_513 [Selaginella moellendorffii]
          Length = 823

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           V+  GPPG GKT LA+ VA E  +NF S  GP +
Sbjct: 577 VMLYGPPGTGKTLLAKAVATECSLNFLSVKGPEV 610


>gi|229578059|ref|YP_002836457.1| TIP49 domain protein [Sulfolobus islandicus Y.G.57.14]
 gi|228008773|gb|ACP44535.1| TIP49 domain protein [Sulfolobus islandicus Y.G.57.14]
          Length = 452

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 27/50 (54%)

Query: 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
            GQ EA     V ++       +   +LFVGPPG GKT LA  +ARELG
Sbjct: 39 LVGQAEAREAAGVVVQLINQGKMSGKGILFVGPPGTGKTALAVAIARELG 88


>gi|260830569|ref|XP_002610233.1| hypothetical protein BRAFLDRAFT_130765 [Branchiostoma floridae]
 gi|229295597|gb|EEN66243.1| hypothetical protein BRAFLDRAFT_130765 [Branchiostoma floridae]
          Length = 1853

 Score = 42.0 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 19/32 (59%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E  +NF S  GP
Sbjct: 754 VLLYGPPGTGKTLLAKAVATECSLNFLSVKGP 785



 Score = 42.0 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 19/32 (59%), Positives = 21/32 (65%)

Query: 57   VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
            VL  GPPG GKT LA+ VA E  +NF S  GP
Sbjct: 1603 VLLYGPPGTGKTLLAKAVATECSLNFLSVKGP 1634


>gi|167038463|ref|YP_001666041.1| PTS system transcriptional activator [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320116857|ref|YP_004187016.1| sigma-54 factor interaction domain-containing protein
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|166857297|gb|ABY95705.1| PTS system transcriptional activator [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319929948|gb|ADV80633.1| sigma-54 factor interaction domain-containing protein
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
          Length = 979

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 76/184 (41%), Gaps = 40/184 (21%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARA----EALDHVLFVGPPGL 65
           +NV +++ D      +    F   + +  +LKV I  AKA        L H L VGP G 
Sbjct: 112 QNVEKQNVDKDHNSNKDTLSFKDIIGSEGSLKVQISLAKAAVLYPPHGL-HTLIVGPSGA 170

Query: 66  GKTTLAQVV---ARELGVNFRSTSGPVIAKAGDLA------------------------- 97
           GK+ LA+ +   A E G  F   +  V+    D A                         
Sbjct: 171 GKSQLAEAMYSFAIESG-RFSKNAPFVVFNCADYADNPQLLMSQLFGYVKGAFTGADVPK 229

Query: 98  ALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLI 157
           A L    D  +LF+DE+HRL    +EIL+  ++  +   + GE  S R  +I      LI
Sbjct: 230 AGLVEKADGGILFLDEVHRLPSEGQEILFSILDKGKFRRL-GETESTREAQI-----MLI 283

Query: 158 AATT 161
           AATT
Sbjct: 284 AATT 287


>gi|134287770|ref|YP_001109936.1| FtsH-2 peptidase [Burkholderia vietnamiensis G4]
 gi|134132420|gb|ABO60155.1| membrane protease FtsH catalytic subunit [Burkholderia
           vietnamiensis G4]
          Length = 633

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           VL VGPPG GKT LA+ VA E GV F S SG    +   G  AA + +L ++       +
Sbjct: 200 VLLVGPPGTGKTLLARAVAGEAGVAFFSISGSEFVEMFVGVGAARVRDLFEQARQHAPAI 259

Query: 109 LFIDEIHRL 117
           +FIDE+  L
Sbjct: 260 VFIDELDSL 268


>gi|326501604|dbj|BAK02591.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 986

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK-----AGDLAALLTNLEDR---DV 108
           VL  GPPG GKT LA+ +A E G NF S +G  +       A  L   L +   R    +
Sbjct: 733 VLLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASRLAPVI 792

Query: 109 LFIDEIHRL 117
           +F+DE+  L
Sbjct: 793 IFVDEVDSL 801


>gi|311032289|ref|ZP_07710379.1| cell division protease FtsH [Bacillus sp. m3-13]
          Length = 327

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 40  VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 99

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 100 IFIDEI 105


>gi|284043135|ref|YP_003393475.1| ATP-dependent metalloprotease FtsH [Conexibacter woesei DSM 14684]
 gi|310943084|sp|D3F124|FTSH1_CONWI RecName: Full=ATP-dependent zinc metalloprotease FtsH 1
 gi|283947356|gb|ADB50100.1| ATP-dependent metalloprotease FtsH [Conexibacter woesei DSM 14684]
          Length = 653

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 33/59 (55%), Gaps = 6/59 (10%)

Query: 34  VEACSNLKVFIEAAKARAEAL-----DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VE    +K F+E  K + +AL       VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 167 VEELHEIKEFLENPK-KFQALGARIPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISG 224


>gi|255521742|ref|ZP_05388979.1| cell division protein ftsH [Listeria monocytogenes FSL J1-175]
          Length = 400

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 216 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 275

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 276 IFIDEI 281


>gi|242065978|ref|XP_002454278.1| hypothetical protein SORBIDRAFT_04g027890 [Sorghum bicolor]
 gi|241934109|gb|EES07254.1| hypothetical protein SORBIDRAFT_04g027890 [Sorghum bicolor]
          Length = 973

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK-----AGDLAALLTNLEDR---DV 108
           VL  GPPG GKT LA+ +A E G NF S +G  +       A  L   L +   R    +
Sbjct: 720 VLLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASRLAPVI 779

Query: 109 LFIDEIHRL 117
           +F+DE+  L
Sbjct: 780 IFVDEVDSL 788


>gi|225557765|gb|EEH06050.1| ribosome biogenesis ATPase RIX7 [Ajellomyces capsulatus G186AR]
          Length = 751

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 34/72 (47%), Gaps = 3/72 (4%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           ADI  L     E  T  VE   N  ++   A+    A   VL  GPPG GKT LA+ VA 
Sbjct: 490 ADIGALSGVRDELATAIVEPIRNPDIY---ARVGITAPTGVLLWGPPGCGKTLLAKAVAN 546

Query: 77  ELGVNFRSTSGP 88
           E   NF S  GP
Sbjct: 547 ESRANFISVKGP 558



 Score = 38.9 bits (89), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL  GPPG GKT +A   A ELGV F + S P I    +G+    L    D        +
Sbjct: 214 VLLHGPPGCGKTMIANAFAAELGVPFIAISAPSIVSGMSGESEKALREHFDEAKKVAPCL 273

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 274 IFIDEIDAIT 283


>gi|158285610|ref|XP_308395.4| AGAP007477-PA [Anopheles gambiae str. PEST]
 gi|157020075|gb|EAA04621.4| AGAP007477-PA [Anopheles gambiae str. PEST]
          Length = 341

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 6/66 (9%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR-E 77
          I   RP+  EE  G  E  + L +F     A      +++  GPPG+GKTT    +AR  
Sbjct: 28 IEKYRPQRFEEIVGNEETVARLGIFASQGNA-----PNIIIAGPPGVGKTTTILCLARIL 82

Query: 78 LGVNFR 83
          LG NFR
Sbjct: 83 LGPNFR 88


>gi|161528731|ref|YP_001582557.1| ATPase AAA [Nitrosopumilus maritimus SCM1]
 gi|160340032|gb|ABX13119.1| AAA family ATPase, CDC48 subfamily [Nitrosopumilus maritimus SCM1]
          Length = 721

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 64/138 (46%), Gaps = 19/138 (13%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEA--------AKARAEA 53
           +DR   L  N+S E A    +R  T EE  G  E    ++  +E         ++   E 
Sbjct: 156 IDRSTTL--NISTETAVDRKVR-VTYEEVGGLGEKVKAMREIVELPLRHPELFSRLGIEP 212

Query: 54  LDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL--EDRD-- 107
              +L  GPPG GKT LA+V+A E   N    +GP I     G+  A L ++  E +D  
Sbjct: 213 HSGILLYGPPGCGKTLLAKVMASESEANMFPINGPEIMNKYYGETEAKLRDIFKEAKDNS 272

Query: 108 --VLFIDEIHRLSIIVEE 123
             ++FIDEI  ++   EE
Sbjct: 273 PSIIFIDEIDAIAPKREE 290


>gi|50304409|ref|XP_452154.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49641286|emb|CAH02547.1| KLLA0B13992p [Kluyveromyces lactis]
          Length = 352

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RPR L++   Q  A + LK  ++ A      L H+LF GPPG GKT+    + +EL
Sbjct: 29 RPRKLDDVAAQDHAVTVLKRTLQTAN-----LPHMLFYGPPGTGKTSTILALTKEL 79


>gi|70952929|ref|XP_745599.1| ATPase [Plasmodium chabaudi chabaudi]
 gi|56525973|emb|CAH74260.1| ATPase, putative [Plasmodium chabaudi chabaudi]
          Length = 845

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT LA+ ++ E+  NF +  GP I
Sbjct: 461 ILLYGPPGCGKTMLAKAISNEMKANFIAIKGPEI 494


>gi|328954667|ref|YP_004372000.1| membrane protease FtsH catalytic subunit [Coriobacterium glomerans
           PW2]
 gi|328454991|gb|AEB06185.1| membrane protease FtsH catalytic subunit [Coriobacterium glomerans
           PW2]
          Length = 736

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL------EDRDV 108
           VL VGPPG GKT LA+ VA E GV F S SG    +   G  A+ + +L      +   +
Sbjct: 273 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFKEAKAQSPSI 332

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 333 VFIDEI 338


>gi|328953484|ref|YP_004370818.1| AAA family ATPase, CDC48 subfamily [Desulfobacca acetoxidans DSM
           11109]
 gi|328453808|gb|AEB09637.1| AAA family ATPase, CDC48 subfamily [Desulfobacca acetoxidans DSM
           11109]
          Length = 715

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 8/71 (11%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR--- 106
           +A   VL  GPPG GKT +A+ +A E   NF S SGP +     G+  A L  + +    
Sbjct: 215 DAPKGVLLHGPPGCGKTLIARTIAHETEANFFSVSGPEVVHKFYGESEAHLRKIFEEASR 274

Query: 107 ---DVLFIDEI 114
               ++F+DEI
Sbjct: 275 KGPSIIFMDEI 285



 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT LA+ +A E  VNF S  GP +
Sbjct: 493 ILLTGPPGCGKTLLAKAIATESRVNFLSVKGPAL 526


>gi|325096741|gb|EGC50051.1| activator 1 subunit 3 [Ajellomyces capsulatus H88]
          Length = 443

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           RP TLE+ +G  +  S +  FI+  +     L H+L  GPPG GKT+    +AR +
Sbjct: 52  RPNTLEDVSGHHDIISTINRFIDKNR-----LPHLLLYGPPGTGKTSTILALARRI 102


>gi|303240182|ref|ZP_07326702.1| ATP-dependent metalloprotease FtsH [Acetivibrio cellulolyticus CD2]
 gi|302592273|gb|EFL62001.1| ATP-dependent metalloprotease FtsH [Acetivibrio cellulolyticus CD2]
          Length = 604

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 47/95 (49%), Gaps = 11/95 (11%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           EE    VE     K F+E     A     VL VGPPG GKT LA+ V+ E GV F + SG
Sbjct: 172 EELKEIVEFLKQPKKFVELG---ARIPKGVLLVGPPGTGKTLLAKAVSGEAGVPFFTISG 228

Query: 88  PVIAK--AGDLAALLTNLEDRD------VLFIDEI 114
               +   G  A+ + +L D+       ++FIDEI
Sbjct: 229 SDFVEMFVGVGASRVRDLFDQAKKNSPCIVFIDEI 263


>gi|290997828|ref|XP_002681483.1| aaa ATPase family protein [Naegleria gruberi]
 gi|284095107|gb|EFC48739.1| aaa ATPase family protein [Naegleria gruberi]
          Length = 948

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 33/65 (50%), Gaps = 8/65 (12%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DVL 109
           L VGPPG GKT LA+ VA E GV F S SG       V      +  L    +D    ++
Sbjct: 503 LLVGPPGTGKTLLAKAVAGEAGVPFYSISGSEFVEMVVGVGPARVRKLFKEAKDNAPSII 562

Query: 110 FIDEI 114
           FIDEI
Sbjct: 563 FIDEI 567


>gi|225573964|ref|ZP_03782609.1| hypothetical protein RUMHYD_02058 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038781|gb|EEG49027.1| hypothetical protein RUMHYD_02058 [Blautia hydrogenotrophica DSM
           10507]
          Length = 595

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 184 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 214


>gi|160945108|ref|ZP_02092334.1| hypothetical protein FAEPRAM212_02627 [Faecalibacterium prausnitzii
           M21/2]
 gi|158442839|gb|EDP19844.1| hypothetical protein FAEPRAM212_02627 [Faecalibacterium prausnitzii
           M21/2]
 gi|295105644|emb|CBL03188.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Faecalibacterium prausnitzii SL3/3]
          Length = 440

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 28/131 (21%)

Query: 16  DADISLLRPRTLEE-----FTGQVEACSNLKVFIEAAKARAEA---------LDHVLFVG 61
           D DI+++ P  ++E       GQ EA   L V +     R  +           +VL +G
Sbjct: 76  DLDINIMTPAEIKEGLDQYVIGQDEAKRVLSVSVYNHYKRILSGKGGDVELQKSNVLLLG 135

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDV------ 108
           P G+GKT LAQ +A+ LGV F       + +AG +   + N+        D DV      
Sbjct: 136 PSGVGKTLLAQTLAKMLGVPFAIADATTLTEAGYVGEDVENILLKLIQAADFDVQKAQIG 195

Query: 109 -LFIDEIHRLS 118
            ++IDEI +++
Sbjct: 196 IIYIDEIDKIT 206


>gi|84490197|ref|YP_448429.1| putative 26S protease, regulatory subunit [Methanosphaera
           stadtmanae DSM 3091]
 gi|84373516|gb|ABC57786.1| putative 26S protease, regulatory subunit [Methanosphaera
           stadtmanae DSM 3091]
          Length = 370

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 105/242 (43%), Gaps = 34/242 (14%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKV---FIEAA-KARAEALDH 56
           M  ++  + + +S+ +  +S        +  GQ +A +  K+   ++E   K +  A  +
Sbjct: 105 MFKQDSKIKQTLSKHEYKVS--------DVVGQTKAKNKAKIITNYLENPDKFKNWAPRN 156

Query: 57  VLFVGPPGLGKTTLAQVVARELGV--NFRSTSGPVIAKAGDLAALLTNLEDR------DV 108
           +LF G PG GKT LAQ +A EL V  +    +  +    GD A  +  L  +       V
Sbjct: 157 ILFYGRPGTGKTMLAQALANELNVPIHMIKATSLIGNHVGDGANQIHELYKQARYTKPTV 216

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +FIDEI  +++   E  Y ++     +++         ++ N S  T I AT    +L  
Sbjct: 217 IFIDEIDAIAL---ERKYQSLRGDVTEIVNALLTEMDGIEDNDSIIT-ICATNNPEILDY 272

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVT---DEAACEIAMRSRGTPRIAGRL 225
            ++ RF   I       E+ + I+++  K   L  +   D+  CE       T  ++GR 
Sbjct: 273 AIRSRFEEEIEFTLPNDEERRIILEKNIKTLPLKCSFNLDKLVCE-------TKNLSGRD 325

Query: 226 LR 227
           ++
Sbjct: 326 MK 327


>gi|121603307|ref|YP_980636.1| ATP-dependent metalloprotease FtsH [Polaromonas naphthalenivorans
           CJ2]
 gi|120592276|gb|ABM35715.1| membrane protease FtsH catalytic subunit [Polaromonas
           naphthalenivorans CJ2]
          Length = 618

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 45/91 (49%), Gaps = 8/91 (8%)

Query: 35  EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK-- 92
           E    LK   E  +  A     VL VGPPG GKT LA+ VA E GV F S SG    +  
Sbjct: 176 EVVDFLKHPQEYGRLGAHIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEMF 235

Query: 93  AGDLAALLTNLEDR------DVLFIDEIHRL 117
            G  AA + +L ++       ++FIDE+  L
Sbjct: 236 VGVGAARVRDLFEQARGMAPAIIFIDELDAL 266


>gi|307194746|gb|EFN76980.1| Katanin p60 ATPase-containing subunit A-like 2 [Harpegnathos
           saltator]
          Length = 501

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRS-TSGPVIAKA-GDLAA---LLTNLEDR- 106
           A   VL  GPPG GKT LA+ VA E    F + TS  VI+K  GD      +LT+L    
Sbjct: 255 ACKGVLLYGPPGTGKTMLAKAVATECQSTFFNITSSSVISKWRGDSEKYIRVLTDLAKHY 314

Query: 107 --DVLFIDEI 114
              ++FIDEI
Sbjct: 315 APTIIFIDEI 324


>gi|301612800|ref|XP_002935905.1| PREDICTED: chromosome transmission fidelity protein 18 homolog
           [Xenopus (Silurana) tropicalis]
          Length = 982

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 34/68 (50%), Gaps = 10/68 (14%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG-----PVIAK-----AGDLAALLTNLEDR 106
            L  GPPGLGKTTLA V+AR  G N    +      P I K     A  + ++L   E  
Sbjct: 373 ALLCGPPGLGKTTLAHVIARHAGYNVVEMNASDDRSPEIFKTRIEAATQMKSVLGVDERP 432

Query: 107 DVLFIDEI 114
           + L IDEI
Sbjct: 433 NCLIIDEI 440


>gi|299536710|ref|ZP_07050020.1| cell division protease ftsH-like protein [Lysinibacillus fusiformis
           ZC1]
 gi|298727824|gb|EFI68389.1| cell division protease ftsH-like protein [Lysinibacillus fusiformis
           ZC1]
          Length = 675

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           +L VGPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 201 ILLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 260

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 261 IFIDEI 266


>gi|292656507|ref|YP_003536404.1| cell division control protein 48 [Haloferax volcanii DS2]
 gi|291371302|gb|ADE03529.1| cell division control protein 48 [Haloferax volcanii DS2]
          Length = 743

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 70/148 (47%), Gaps = 17/148 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNL------EDRDV 108
           VL  GPPG GKT LA+ VA E   +F S +GP +I+K  G+    L  +      E   +
Sbjct: 226 VLLHGPPGTGKTLLARAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDAKEESPSI 285

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLM-VGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           +FIDE+  ++   E++           L+ + +G  AR       +  +IAAT RV  + 
Sbjct: 286 IFIDELDSIAPKREDVTGEVERRVVAQLLTMMDGLEAR------GQVIVIAATNRVDSVD 339

Query: 168 NPLQ--DRFGIPIRLNFYEIEDLKTIVQ 193
             L+   RF   I +   + E  K I+Q
Sbjct: 340 PALRRPGRFDREIEIGVPDEEGRKEILQ 367



 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 20/37 (54%), Positives = 22/37 (59%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           EA   VL  GPPG GKT +A+ VA E   NF S  GP
Sbjct: 494 EAPKGVLLYGPPGTGKTLIAKAVANETNANFISVRGP 530


>gi|269792568|ref|YP_003317472.1| ATPase associated with various cellular activities AAA_5
           [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269100203|gb|ACZ19190.1| ATPase associated with various cellular activities AAA_5
           [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 651

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 28/114 (24%)

Query: 27  LEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE-LGVN---- 81
           L EFT   +   ++K FI A K       H++  GPPG GKTTLA+   +E + +N    
Sbjct: 331 LNEFTLPAKPIISVKNFINANK-------HIIMTGPPGTGKTTLAERFCQEAVRINYISG 383

Query: 82  ------------FRSTSGPVIAKAGDLA----ALLTNLEDRDVLFIDEIHRLSI 119
                       F +  G +  K G L+      L ++ +   L IDEI+R  +
Sbjct: 384 YMMTTAIADWSTFDTIGGYMPDKNGSLSFVEGVFLKSIRENKWLIIDEINRAEV 437


>gi|255324356|ref|ZP_05365475.1| DNA polymerase III subunit gamma/tau [Corynebacterium
          tuberculostearicum SK141]
 gi|255298575|gb|EET77873.1| DNA polymerase III subunit gamma/tau [Corynebacterium
          tuberculostearicum SK141]
          Length = 791

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 6/68 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
          RP T  E  GQ +  + L   ++A +     ++H  LF GP G GKT+ A+++AR L   
Sbjct: 8  RPATFAEVVGQEQVTTPLSAALDAGR-----INHAYLFSGPRGCGKTSSARIMARSLNCE 62

Query: 82 FRSTSGPV 89
             TS P 
Sbjct: 63 HGPTSTPC 70


>gi|258404646|ref|YP_003197388.1| ATP-dependent protease La [Desulfohalobium retbaense DSM 5692]
 gi|257796873|gb|ACV67810.1| ATP-dependent protease La [Desulfohalobium retbaense DSM 5692]
          Length = 815

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 84/196 (42%), Gaps = 50/196 (25%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           + FVGPPG+GKT+L++ +AR  G  F R + G V  +A              G +   L 
Sbjct: 361 LCFVGPPGVGKTSLSKSIARSTGREFVRLSLGGVRDEAEIRGHRRTYVGALPGKIIQSLK 420

Query: 102 NLEDRDVLF-IDEIHRLSI--------IVEEILYP----AMEDFQLDLMVGEGPSARSVK 148
             +  + +F +DE+ ++S+         + E+L P    A  D  LDL            
Sbjct: 421 RAQSNNPVFCLDEVDKMSMDFRGDPSAALLEVLDPEQNVAFNDHYLDL-----------D 469

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY-EIEDL---------KTIVQRGAKL 198
            +LS    I     +  +  PL+DR  I I+L+ Y E E L         K + + G   
Sbjct: 470 YDLSHIFFITTANYLEAIPAPLRDRMEI-IKLSGYLETEKLQIARKFLLPKQLHKNGLDP 528

Query: 199 TGLAVTDEAACEIAMR 214
             ++V+D A  E+  R
Sbjct: 529 EQVSVSDGALLEVIRR 544


>gi|254457852|ref|ZP_05071279.1| atpase ec atp-dependent zn protease [Campylobacterales bacterium GD
           1]
 gi|207085245|gb|EDZ62530.1| atpase ec atp-dependent zn protease [Campylobacterales bacterium GD
           1]
          Length = 547

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG+GKT +A+ VA E GV F   SG
Sbjct: 185 VLLVGPPGVGKTMIAKAVAHEAGVPFFYQSG 215


>gi|156384148|ref|XP_001633193.1| predicted protein [Nematostella vectensis]
 gi|156220260|gb|EDO41130.1| predicted protein [Nematostella vectensis]
          Length = 329

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+ L++     +  + ++ FI       E L H+LF GPPG GKT+    VA++L
Sbjct: 18 RPKCLDDLISHTDIINTIQRFINE-----ERLPHLLFYGPPGTGKTSTILAVAKQL 68


>gi|126180341|ref|YP_001048306.1| ATPase [Methanoculleus marisnigri JR1]
 gi|125863135|gb|ABN58324.1| ATPase associated with various cellular activities, AAA_3
           [Methanoculleus marisnigri JR1]
          Length = 324

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 12/93 (12%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR--------- 106
           H+L  G PG  KTT+ ++VAR +   FR   G V  +  D+  +     +R         
Sbjct: 47  HLLIEGVPGTAKTTICKIVARLIDYEFRRVQGAVDIQPADIIGVRVYDRNRSEFVLQRGP 106

Query: 107 ---DVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
              + L +DE++RL+   +  L  AM + Q+ +
Sbjct: 107 IFTNFLMVDEMNRLTPKTQSALLEAMSERQVTI 139


>gi|70948653|ref|XP_743809.1| cell division protein FtsH [Plasmodium chabaudi chabaudi]
 gi|56523487|emb|CAH79007.1| cell division protein FtsH, putative [Plasmodium chabaudi chabaudi]
          Length = 850

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL VGPPG GKT LA+ VA E  V +  TSGP
Sbjct: 188 VLLVGPPGSGKTMLARAVATEANVPYIYTSGP 219


>gi|50085313|ref|YP_046823.1| putative methanol dehydrogenase regulatory protein [Acinetobacter
           sp. ADP1]
 gi|49531289|emb|CAG69001.1| putative methanol dehydrogenase regulatory protein [Acinetobacter
           sp. ADP1]
          Length = 298

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 42/88 (47%), Gaps = 12/88 (13%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAAL-LTNLEDR-------- 106
           HVLF   PGLGKTTLA  ++R  G+NF          A D+  + + N +D         
Sbjct: 39  HVLFEDLPGLGKTTLASALSRLAGLNFGRIQFTNDMLASDVLGINMFNQKDHVFEFKRGP 98

Query: 107 ---DVLFIDEIHRLSIIVEEILYPAMED 131
               +L  DEI+R S   +  L  AME+
Sbjct: 99  IFTQILLADEINRCSPKTQSALLEAMEE 126


>gi|89100506|ref|ZP_01173367.1| Cell division protein ftsH [Bacillus sp. NRRL B-14911]
 gi|89084772|gb|EAR63912.1| Cell division protein ftsH [Bacillus sp. NRRL B-14911]
          Length = 662

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 257

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 258 IFIDEI 263


>gi|328707867|ref|XP_001946814.2| PREDICTED: peroxisome biogenesis protein 6-like [Acyrthosiphon
           pisum]
          Length = 810

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 583 ILLYGPPGTGKTLLAKAVATECKYNFLSIKGP 614


>gi|289449797|ref|YP_003475214.1| ATP-dependent metallopeptidase HflB [Clostridiales genomosp. BVAB3
           str. UPII9-5]
 gi|289184344|gb|ADC90769.1| ATP-dependent metallopeptidase HflB [Clostridiales genomosp. BVAB3
           str. UPII9-5]
          Length = 673

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           +L VGPPG GKT LA+ VA E GV F S SG       V   A  +  L   ++     +
Sbjct: 204 ILLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFAEVKKHSPAI 263

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 264 IFIDEI 269


>gi|254579643|ref|XP_002495807.1| ZYRO0C03476p [Zygosaccharomyces rouxii]
 gi|238938698|emb|CAR26874.1| ZYRO0C03476p [Zygosaccharomyces rouxii]
          Length = 1028

 Score = 41.6 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 4/48 (8%)

Query: 41  KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           ++F    K R+     VLF GPPG GKT +A+ +A    +NF S  GP
Sbjct: 753 QLFASGMKKRS----GVLFYGPPGTGKTLMAKAIATNFSLNFFSVKGP 796


>gi|229827992|ref|ZP_04454061.1| hypothetical protein GCWU000342_00041 [Shuttleworthia satelles DSM
           14600]
 gi|229792586|gb|EEP28700.1| hypothetical protein GCWU000342_00041 [Shuttleworthia satelles DSM
           14600]
          Length = 672

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 62/137 (45%), Gaps = 23/137 (16%)

Query: 1   MMDREG------LLSRNVSQEDADISLLRPRTL--EEFTGQVEACSNLKVFIEA------ 46
           MMDR G       LS  + + +A I +     +  ++  G+ EA  NL+  +E       
Sbjct: 134 MMDRMGGALGGNSLSFGMGKSNAKIYVKSSDGIRFDDVAGEEEAKENLQEIVEYLHDPHK 193

Query: 47  -AKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAAL 99
                A+    +L VGPPG GKT LA+ VA E  V F S SG    +      A  +  L
Sbjct: 194 YTAIGAKMPKGILLVGPPGTGKTMLAKAVAGEANVPFFSMSGSEFVEMFVGMGASKVRDL 253

Query: 100 LTNLEDRD--VLFIDEI 114
               +++   ++FIDEI
Sbjct: 254 FRQAKEKAPCIVFIDEI 270


>gi|311741093|ref|ZP_07714918.1| DNA polymerase III, gamma/tau subunit DnaX [Corynebacterium
          pseudogenitalium ATCC 33035]
 gi|311303895|gb|EFQ79973.1| DNA polymerase III, gamma/tau subunit DnaX [Corynebacterium
          pseudogenitalium ATCC 33035]
          Length = 787

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 6/68 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
          RP T  E  GQ +  + L   ++A +     ++H  LF GP G GKT+ A+++AR L   
Sbjct: 8  RPATFAEVVGQEQVTTPLSAALDAGR-----INHAYLFSGPRGCGKTSSARIMARSLNCE 62

Query: 82 FRSTSGPV 89
             TS P 
Sbjct: 63 HGPTSTPC 70


>gi|146161282|ref|XP_977097.2| ATPase, AAA family protein [Tetrahymena thermophila]
 gi|146146796|gb|EAR86317.2| ATPase, AAA family protein [Tetrahymena thermophila SB210]
          Length = 440

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 50/106 (47%), Gaps = 15/106 (14%)

Query: 27  LEEFTGQVEACSNLKV-------FIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL- 78
            ++  G V+A  +LK        F E  K   +    +L  GPPG GKT LA+  A E  
Sbjct: 139 WDDIAGLVKAKESLKEAVILPIRFPEIFKGARKPWKGILLYGPPGTGKTYLAKACATETE 198

Query: 79  GVNFRSTSGPVIAK-AGDLAALLTNL------EDRDVLFIDEIHRL 117
           G  F  +S  +++K  G+   L+ NL      +   ++FIDE+  L
Sbjct: 199 GTFFSVSSADLVSKYVGESEKLIKNLFALAREKKPSIIFIDEVDSL 244


>gi|85372702|gb|ABC70156.1| AAA-type ATPase [uncultured prokaryote 2E01B]
          Length = 725

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 20/34 (58%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL  GPPG GKT +AQ VA E+   F S SGP I
Sbjct: 242 VLLHGPPGTGKTLIAQAVANEVDAEFISVSGPEI 275



 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ +A E  VNF   +GP
Sbjct: 507 VLLHGPPGTGKTLLARAIAGESEVNFIQVAGP 538


>gi|66801075|ref|XP_629463.1| AAA ATPase domain-containing protein [Dictyostelium discoideum AX4]
 gi|74996469|sp|Q54CS8|PEX6_DICDI RecName: Full=Peroxisomal biogenesis factor 6; AltName:
           Full=Peroxin-6
 gi|60462869|gb|EAL61068.1| AAA ATPase domain-containing protein [Dictyostelium discoideum AX4]
          Length = 1201

 Score = 41.6 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 17/32 (53%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT LA+ +A E  +NF S  GP
Sbjct: 955 ILLFGPPGTGKTLLAKAIATECSLNFLSVKGP 986


>gi|327279995|ref|XP_003224740.1| PREDICTED: katanin p60 ATPase-containing subunit A1-like isoform 1
           [Anolis carolinensis]
          Length = 495

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 79/194 (40%), Gaps = 36/194 (18%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108
           VL VGPPG GKT LA+ VA E    F + S   +     G+   L      +        
Sbjct: 249 VLMVGPPGTGKTLLAKAVATECKTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTT 308

Query: 109 LFIDEIHRLSI---IVEEILYPAMEDFQLDLMVG-EGPSARSVKINLSRFTLIAATTRVG 164
           +FIDEI  +       EE  + A    + +L+V  +G    S   + S+  ++ A T   
Sbjct: 309 IFIDEIDSICSRRGTSEE--HEASRRVKAELLVQMDGVGGASENDDPSKMVMVLAATNFP 366

Query: 165 L-----LTNPLQDRFGIP----------IRLNFYEIE-----DLKTIVQRGAKLTGLAVT 204
                 L   L+ R  IP          +R+N  E+E     DL TI Q     +G  +T
Sbjct: 367 WDIDEALRRRLEKRIYIPLPSAKGREELLRINLRELELAGDVDLATIAQNMDGYSGADIT 426

Query: 205 D--EAACEIAMRSR 216
           +    A  +AMR R
Sbjct: 427 NVCRDASLMAMRRR 440


>gi|322370336|ref|ZP_08044895.1| cell division control protein 48 [Haladaptatus paucihalophilus
           DX253]
 gi|320550044|gb|EFW91699.1| cell division control protein 48 [Haladaptatus paucihalophilus
           DX253]
          Length = 713

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 21/39 (53%), Positives = 24/39 (61%)

Query: 50  RAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           R E    VL  GPPG GKT LA+ +A E  VNF S +GP
Sbjct: 488 RTEPPSGVLLYGPPGTGKTLLARALAGESDVNFVSVAGP 526



 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 23/34 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL  GPPG GKT +A+ VA E+  +F S SGP +
Sbjct: 229 VLLYGPPGTGKTLIAKAVANEVNAHFVSVSGPEV 262


>gi|222100874|ref|YP_002535442.1| DNA polymerase III, gamma and tau subunit [Thermotoga neapolitana
           DSM 4359]
 gi|221573264|gb|ACM24076.1| DNA polymerase III, gamma and tau subunit [Thermotoga neapolitana
           DSM 4359]
          Length = 473

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 94/237 (39%), Gaps = 43/237 (18%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  E   Q     ++K  I  A  +       +F GP G GKTTLA+++A+ L    
Sbjct: 9   RPKTFSEVVNQ----DHVKKAIIGAIQKNSVAHGYIFAGPRGTGKTTLARILAKSLNCEN 64

Query: 83  RSTSGPV----IAKAGDLAALLTNLE-----DRDVLFIDEIHRLS--------------I 119
           R    P       +  D    +  +E     +R    IDEI R+                
Sbjct: 65  REGVEPCNRCRSCREIDEGTFMDVIELDAASNRG---IDEIRRIRDAVGYRPMEGKYKVY 121

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           I++E+     E F   L   E P +  V         + ATT +  +   +  R  +   
Sbjct: 122 IIDEVHMLTKEAFNALLKTLEEPPSHVV--------FVLATTNLEKVPPTIISRCQV--- 170

Query: 180 LNFYEIED--LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
             F  I D  ++  +Q  A+  G+ + DEA   IA R+ G  R A  +L +V  F+E
Sbjct: 171 FEFRNIPDELIEKRLQEVARAEGIDIDDEALRFIARRAAGGMRDALTMLEQVWKFSE 227


>gi|115762608|ref|XP_784872.2| PREDICTED: similar to GA19899-PA [Strongylocentrotus purpuratus]
 gi|115948961|ref|XP_001198560.1| PREDICTED: similar to GA19899-PA [Strongylocentrotus purpuratus]
          Length = 444

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 20/109 (18%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E ++ S+LR + L  +         LK +             +L  GPPG GK+ LAQ V
Sbjct: 206 EGSNPSMLRSKVLSHYLKDWFLIGGLKPW-----------KRILLYGPPGTGKSRLAQAV 254

Query: 75  ARELGVNFRSTSGP--VIAKAGDLAALLTNL-------EDRDVLFIDEI 114
           ++E+   F   S    + +  G+   ++  L       E R V+FIDE+
Sbjct: 255 SKEINSTFYCVSSADLISSWVGESEKIIKELFHHATQQEGRSVVFIDEL 303


>gi|37522218|ref|NP_925595.1| cell division protein FtsH-like protein [Gloeobacter violaceus PCC
           7421]
 gi|35213218|dbj|BAC90590.1| glr2649 [Gloeobacter violaceus PCC 7421]
          Length = 785

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 7/68 (10%)

Query: 27  LEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           L E  G  EA   ++ FI+  ++        A+     LFVGPPG GKT LA+ +A E G
Sbjct: 335 LAEVIGCEEAKGEVQEFIDFLRSPDRYRRIGAKVPRGFLFVGPPGTGKTLLAKAIANEAG 394

Query: 80  VNFRSTSG 87
           V F + SG
Sbjct: 395 VPFYALSG 402



 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 38/82 (46%), Gaps = 20/82 (24%)

Query: 51  AEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------- 103
           AE    VL VGPPG GKT +A+ +A E GV F S +      A D A +   +       
Sbjct: 105 AEPPRGVLLVGPPGTGKTMIARAIANEAGVPFYSLA------AADFANMFLGVGSQRIRQ 158

Query: 104 -------EDRDVLFIDEIHRLS 118
                    R ++FIDEI  L+
Sbjct: 159 IYRTARRHPRAIVFIDEIEVLA 180


>gi|326202847|ref|ZP_08192714.1| ATP-dependent metalloprotease FtsH [Clostridium papyrosolvens DSM
           2782]
 gi|325986924|gb|EGD47753.1| ATP-dependent metalloprotease FtsH [Clostridium papyrosolvens DSM
           2782]
          Length = 619

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 34/69 (49%), Gaps = 7/69 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78
           T E   G  E    L   +E  KA  + ++        VL VGPPG GKT LA+ V+ E 
Sbjct: 162 TFENVAGADEEKEELAEIVEFLKAPKKFVELGARIPKGVLLVGPPGTGKTLLAKAVSGEA 221

Query: 79  GVNFRSTSG 87
           GV F S SG
Sbjct: 222 GVPFFSISG 230


>gi|255609009|ref|XP_002538985.1| werner helicase interacting protein, putative [Ricinus communis]
 gi|223509400|gb|EEF23399.1| werner helicase interacting protein, putative [Ricinus communis]
          Length = 109

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 2/61 (3%)

Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
          LRP+TL+E  GQ       K    A ++    L  ++  GPPG+GKTTLA+++A+     
Sbjct: 19 LRPKTLDEVVGQTHLLGESKPLRRAFESGK--LPSMILWGPPGVGKTTLARLIAQTADAE 76

Query: 82 F 82
          F
Sbjct: 77 F 77


>gi|254502137|ref|ZP_05114288.1| ATP-dependent metallopeptidase HflB subfamily [Labrenzia alexandrii
           DFL-11]
 gi|222438208|gb|EEE44887.1| ATP-dependent metallopeptidase HflB subfamily [Labrenzia alexandrii
           DFL-11]
          Length = 608

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 52/107 (48%), Gaps = 15/107 (14%)

Query: 26  TLEEFTGQVEACSNLKV---FIEAAKARAEALDHV----LFVGPPGLGKTTLAQVVAREL 78
           + E   G  EA   LK    F++  K+      HV    L VGPPG GKT LA+ VA E 
Sbjct: 155 SFENVAGVDEAKRELKEIVDFLKDPKSYGRLGAHVPKGILLVGPPGTGKTLLARAVAGEA 214

Query: 79  GVNFRSTSGPVIAK--AGDLAALLTNLEDR------DVLFIDEIHRL 117
           GV F S SG    +   G  AA + +L ++       ++FIDE+  L
Sbjct: 215 GVPFFSISGSEFVEMFVGVGAARVRDLFEQARKAAPAIIFIDELDAL 261


>gi|153814159|ref|ZP_01966827.1| hypothetical protein RUMTOR_00368 [Ruminococcus torques ATCC 27756]
 gi|317499958|ref|ZP_07958194.1| ATP-dependent Clp protease [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331087819|ref|ZP_08336744.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Lachnospiraceae bacterium 3_1_46FAA]
 gi|145848555|gb|EDK25473.1| hypothetical protein RUMTOR_00368 [Ruminococcus torques ATCC 27756]
 gi|316898675|gb|EFV20710.1| ATP-dependent Clp protease [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330409514|gb|EGG88955.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 423

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 28/129 (21%)

Query: 18  DISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEA---------LDHVLFVGPP 63
           DI+LL P  ++ F      GQ EA   L V +     R  A           ++L +GP 
Sbjct: 60  DINLLTPEEMKAFLDDYVIGQDEAKKVLSVAVYNHYKRIMAEQDLGVELQKSNILMLGPT 119

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------------EDRDVL 109
           G GKT LAQ +A+ L V F       + +AG +   + N+               +  ++
Sbjct: 120 GCGKTLLAQTLAKVLNVPFAIADATALTEAGYVGEDVENILLKIIQAADGDIERAEHGII 179

Query: 110 FIDEIHRLS 118
           +IDEI +++
Sbjct: 180 YIDEIDKIT 188


>gi|30526336|gb|AAP32310.1| putative FtsH protease [Solanum lycopersicum]
          Length = 714

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ +A E GV F S SG       V   A  +  L    + R   +
Sbjct: 261 VLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFAAAKKRSPCI 320

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 321 IFIDEI 326


>gi|15920392|ref|NP_376061.1| hypothetical protein ST0209 [Sulfolobus tokodaii str. 7]
 gi|15621174|dbj|BAB65170.1| 689aa long hypothetical SAV protein [Sulfolobus tokodaii str. 7]
          Length = 689

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT LA+ VA E G NF +  GP I
Sbjct: 422 ILLFGPPGTGKTMLAKAVATESGANFIAVRGPEI 455



 Score = 40.4 bits (93), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 8/77 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL-EDRD-----V 108
           +L  GPPG+GKT LA+ VA E    F S +GP I     G+    L  + ED       +
Sbjct: 149 ILLYGPPGVGKTLLAKAVANETEAYFTSINGPEIMSKFYGESEQRLREIFEDAKKHAPAI 208

Query: 109 LFIDEIHRLSIIVEEIL 125
           +FIDEI  ++   +E++
Sbjct: 209 IFIDEIDAIAPKRDEVI 225


>gi|327279997|ref|XP_003224741.1| PREDICTED: katanin p60 ATPase-containing subunit A1-like isoform 2
           [Anolis carolinensis]
          Length = 487

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 79/194 (40%), Gaps = 36/194 (18%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108
           VL VGPPG GKT LA+ VA E    F + S   +     G+   L      +        
Sbjct: 241 VLMVGPPGTGKTLLAKAVATECKTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTT 300

Query: 109 LFIDEIHRLSI---IVEEILYPAMEDFQLDLMVG-EGPSARSVKINLSRFTLIAATTRVG 164
           +FIDEI  +       EE  + A    + +L+V  +G    S   + S+  ++ A T   
Sbjct: 301 IFIDEIDSICSRRGTSEE--HEASRRVKAELLVQMDGVGGASENDDPSKMVMVLAATNFP 358

Query: 165 L-----LTNPLQDRFGIP----------IRLNFYEIE-----DLKTIVQRGAKLTGLAVT 204
                 L   L+ R  IP          +R+N  E+E     DL TI Q     +G  +T
Sbjct: 359 WDIDEALRRRLEKRIYIPLPSAKGREELLRINLRELELAGDVDLATIAQNMDGYSGADIT 418

Query: 205 D--EAACEIAMRSR 216
           +    A  +AMR R
Sbjct: 419 NVCRDASLMAMRRR 432


>gi|327302246|ref|XP_003235815.1| AAA family ATPase [Trichophyton rubrum CBS 118892]
 gi|326461157|gb|EGD86610.1| AAA family ATPase [Trichophyton rubrum CBS 118892]
          Length = 743

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 35/72 (48%), Gaps = 3/72 (4%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           ADI  L     E  T  VE   N +++   ++    A   VL  GPPG GKT LA+ VA 
Sbjct: 482 ADIGSLGSVREELVTAIVEPIRNPEIY---SRVGISAPTGVLLWGPPGCGKTLLAKAVAN 538

Query: 77  ELGVNFRSTSGP 88
           E   NF S  GP
Sbjct: 539 ESRANFISIKGP 550



 Score = 39.3 bits (90), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL  GPPG GKT +A   A ELGV F + S P I
Sbjct: 214 VLLHGPPGCGKTMIANAFAAELGVPFIAISAPSI 247


>gi|330790315|ref|XP_003283243.1| hypothetical protein DICPUDRAFT_146878 [Dictyostelium purpureum]
 gi|325086924|gb|EGC40307.1| hypothetical protein DICPUDRAFT_146878 [Dictyostelium purpureum]
          Length = 828

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ +A E   NF S  GP
Sbjct: 553 VLMYGPPGCGKTLLAKAIANECQANFISVKGP 584


>gi|326783297|ref|YP_004323757.1| clamp loader subunit [Prochlorococcus phage Syn33]
 gi|310005244|gb|ADO99633.1| clamp loader subunit [Prochlorococcus phage Syn33]
          Length = 313

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 15/121 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T+E+           + F+   +     + ++L  G  G+GKTT+A+ + RELG ++
Sbjct: 11  RPQTIEDCILPANVKETFQSFVNQGE-----IPNLLLSGTAGVGKTTIAKALCRELGADY 65

Query: 83  RSTSGP--------VIAKAGDLAAL--LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
              +G         V  +A   A+   LT      VL IDE    +  V+ +L  ++E+F
Sbjct: 66  YVINGSDEGRFLDTVRNQAKSFASTVSLTASAKHKVLIIDEADNTTPDVQLLLRASIEEF 125

Query: 133 Q 133
           Q
Sbjct: 126 Q 126


>gi|326783830|ref|YP_004324224.1| clamp loader subunit [Synechococcus phage S-SSM7]
 gi|310003842|gb|ADO98237.1| clamp loader subunit [Synechococcus phage S-SSM7]
          Length = 315

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 5/65 (7%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
          RP+T+E+        +  K F++  +     + ++L  GPPG+GKTT+A+ +  ELGV++
Sbjct: 12 RPKTVEDCILPETTKNTFKEFLKKGE-----IPNLLLSGPPGVGKTTVAKALCTELGVDY 66

Query: 83 RSTSG 87
             +G
Sbjct: 67 YVING 71


>gi|296161227|ref|ZP_06844036.1| ATP-dependent metalloprotease FtsH [Burkholderia sp. Ch1-1]
 gi|295888568|gb|EFG68377.1| ATP-dependent metalloprotease FtsH [Burkholderia sp. Ch1-1]
          Length = 634

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           VL VGPPG GKT LA+ VA E GV F S SG    +   G  AA + +L ++       +
Sbjct: 200 VLLVGPPGTGKTLLARAVAGEAGVAFFSISGSEFVEMFVGVGAARVRDLFEQARQHAPAI 259

Query: 109 LFIDEIHRL 117
           +FIDE+  L
Sbjct: 260 VFIDELDSL 268


>gi|302503873|ref|XP_003013896.1| hypothetical protein ARB_08008 [Arthroderma benhamiae CBS 112371]
 gi|291177462|gb|EFE33256.1| hypothetical protein ARB_08008 [Arthroderma benhamiae CBS 112371]
          Length = 743

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 35/72 (48%), Gaps = 3/72 (4%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           ADI  L     E  T  VE   N +++   ++    A   VL  GPPG GKT LA+ VA 
Sbjct: 482 ADIGSLGSVREELVTAIVEPIRNPEIY---SRVGISAPTGVLLWGPPGCGKTLLAKAVAN 538

Query: 77  ELGVNFRSTSGP 88
           E   NF S  GP
Sbjct: 539 ESRANFISIKGP 550



 Score = 39.3 bits (90), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL  GPPG GKT +A   A ELGV F + S P I
Sbjct: 214 VLLHGPPGCGKTMIANAFAAELGVPFIAISAPSI 247


>gi|254568858|ref|XP_002491539.1| Subunit of heteropentameric Replication factor C (RF-C) [Pichia
          pastoris GS115]
 gi|238031336|emb|CAY69259.1| Subunit of heteropentameric Replication factor C (RF-C) [Pichia
          pastoris GS115]
 gi|328351952|emb|CCA38351.1| Replication factor C subunit 2 [Pichia pastoris CBS 7435]
          Length = 324

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+ L+E + Q    SN+ + + + + ++  + H+LF GPPG GKT+    +AREL
Sbjct: 10 RPKKLDEVSAQ----SNV-IRVLSNQLKSANMPHLLFYGPPGTGKTSTILAMAREL 60


>gi|226941483|ref|YP_002796557.1| ATPase associated with various cellular activities AAA_3
           [Laribacter hongkongensis HLHK9]
 gi|226716410|gb|ACO75548.1| ATPase associated with various cellular activities AAA_3
           [Laribacter hongkongensis HLHK9]
          Length = 295

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 67/151 (44%), Gaps = 30/151 (19%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRD-------- 107
           H+L    PG+GKTTLAQ +AR LG+ FR           DL  +  N+ DR         
Sbjct: 34  HLLLEDIPGVGKTTLAQALARSLGLAFRRVQFTSDLLPADLTGV--NVFDRSSGQFRFEP 91

Query: 108 ------VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATT 161
                 ++  DEI+R S   +  L  AME+ Q+        S   V   L    ++ AT 
Sbjct: 92  GPLFSQLVLADEINRASPRTQSALLEAMEERQV--------SVDGVTRPLPDPFVVIATQ 143

Query: 162 ----RVGLLTNP--LQDRFGIPIRLNFYEIE 186
               ++G+   P   +DRF + +RL + + E
Sbjct: 144 NPGEQIGVFPLPESQRDRFLMCLRLGYPDPE 174


>gi|218191584|gb|EEC74011.1| hypothetical protein OsI_08942 [Oryza sativa Indica Group]
          Length = 951

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK-----AGDLAALLTNLEDR---DV 108
           VL  GPPG GKT LA+ +A E G NF S +G  +       A  L   L +   R    +
Sbjct: 698 VLLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASRLAPVI 757

Query: 109 LFIDEIHRL 117
           +F+DE+  L
Sbjct: 758 IFVDEVDSL 766


>gi|149479783|ref|XP_001519056.1| PREDICTED: hypothetical protein, partial [Ornithorhynchus anatinus]
          Length = 506

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 37/79 (46%), Gaps = 10/79 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELG-----VNFRSTSGPVIAK-----AGDLAALLTNLEDR 106
            L  GPPGLGKTTLA V+A+  G     +N      P I K     A  + ++L   E  
Sbjct: 387 ALLCGPPGLGKTTLAHVIAKHAGYNVVEMNASDDRSPDIFKTRIEAATQMKSVLGAHEKP 446

Query: 107 DVLFIDEIHRLSIIVEEIL 125
           + L IDEI     +   +L
Sbjct: 447 NCLIIDEIDGAPTVTINVL 465


>gi|119513548|ref|ZP_01632566.1| Peptidase M41, FtsH [Nodularia spumigena CCY9414]
 gi|119461797|gb|EAW42816.1| Peptidase M41, FtsH [Nodularia spumigena CCY9414]
          Length = 628

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL +GPPG GKT LA+ +A E GV F S SG       V   A  +  L    +D    +
Sbjct: 209 VLLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKDNAPCI 268

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 269 IFIDEI 274


>gi|15790472|ref|NP_280296.1| cell division cycle protein [Halobacterium sp. NRC-1]
 gi|169236208|ref|YP_001689408.1| AAA-type ATPase (transitional ATPase homolog) [Halobacterium
           salinarum R1]
 gi|10580970|gb|AAG19776.1| cell division cycle protein [Halobacterium sp. NRC-1]
 gi|167727274|emb|CAP14060.1| AAA-type ATPase (transitional ATPase homolog) [Halobacterium
           salinarum R1]
          Length = 759

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 99/236 (41%), Gaps = 50/236 (21%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DV 108
           VL  GPPG GKT +A+ VA E+  +F + SGP I     G+    L  + D        +
Sbjct: 233 VLLHGPPGTGKTLIAKAVANEIDAHFETISGPEIMSKYYGESEEKLREVFDEAEENAPAI 292

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDL---MVGEGPSARSVKINLSRFTLIAATTRVGL 165
           +F+DE+  ++        P   + Q D+   +V +  S      +    T+IAAT RV  
Sbjct: 293 VFVDELDSIA--------PKRGETQGDVERRVVAQLLSLMDGLEDRGDVTVIAATNRVDA 344

Query: 166 LTNPLQ--DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAG 223
           +   L+   RF   I +   + +  K I+Q                   + +RG P +  
Sbjct: 345 IDPALRRGGRFDREIEIGVPDQDGRKEILQ-------------------VHTRGMPLVED 385

Query: 224 RLLRRVRDFAEVAHA------KTITREIADAALLRLAID-KMGFDQLDLRYLTMIA 272
             L    D+AE  H       +++ +E A  AL R+  D  +  D++D   L  I+
Sbjct: 386 IDL---DDYAESTHGFVGADIESLAKEAAMNALRRVRPDIDLESDEIDAELLESIS 438



 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 506 VLLYGPPGTGKTLLAKAVANEANSNFISVKGP 537


>gi|66812296|ref|XP_640327.1| AAA ATPase domain-containing protein [Dictyostelium discoideum AX4]
 gi|74897137|sp|Q54SY2|NVL_DICDI RecName: Full=Putative ribosome biogenesis ATPase nvl; AltName:
           Full=Nuclear valosin-containing protein-like
 gi|60468363|gb|EAL66370.1| AAA ATPase domain-containing protein [Dictyostelium discoideum AX4]
          Length = 867

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ +A E   NF S  GP
Sbjct: 603 VLMYGPPGCGKTLLAKAIASECQANFISVKGP 634


>gi|320528059|ref|ZP_08029225.1| putative ATP-dependent metalloprotease [Solobacterium moorei F0204]
 gi|320131685|gb|EFW24249.1| putative ATP-dependent metalloprotease [Solobacterium moorei F0204]
          Length = 619

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--V 108
           +L VGPPG GKT LA+ VA E  V F S SG    +      A  + +L  + +++   +
Sbjct: 206 ILLVGPPGTGKTMLAKAVAGESNVPFFSISGSEFVEMFVGMGASKVRSLFKDAKEKAPCI 265

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 266 VFIDEI 271


>gi|315039481|ref|XP_003169116.1| ribosome biogenesis ATPase RIX7 [Arthroderma gypseum CBS 118893]
 gi|311337537|gb|EFQ96739.1| ribosome biogenesis ATPase RIX7 [Arthroderma gypseum CBS 118893]
          Length = 743

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 35/72 (48%), Gaps = 3/72 (4%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           ADI  L     E  T  VE   N +++   ++    A   VL  GPPG GKT LA+ VA 
Sbjct: 482 ADIGSLGSVREELVTAIVEPIRNPEIY---SRVGISAPTGVLLWGPPGCGKTLLAKAVAN 538

Query: 77  ELGVNFRSTSGP 88
           E   NF S  GP
Sbjct: 539 ESRANFISIKGP 550



 Score = 39.3 bits (90), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL  GPPG GKT +A   A ELGV F + S P I
Sbjct: 214 VLLHGPPGCGKTMIANAFAAELGVPFIAISAPSI 247


>gi|302796450|ref|XP_002979987.1| hypothetical protein SELMODRAFT_111871 [Selaginella moellendorffii]
 gi|300152214|gb|EFJ18857.1| hypothetical protein SELMODRAFT_111871 [Selaginella moellendorffii]
          Length = 876

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           V+  GPPG GKT LA+ VA E  +NF S  GP +
Sbjct: 629 VMLYGPPGTGKTLLAKAVATECSLNFLSVKGPEV 662


>gi|296446425|ref|ZP_06888369.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylosinus
           trichosporium OB3b]
 gi|296256060|gb|EFH03143.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylosinus
           trichosporium OB3b]
          Length = 420

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L +GP G+GKT LAQ +AR L V F       + +AG +   + N+         
Sbjct: 109 AKSNILLIGPTGVGKTMLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASD 168

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R ++++DEI ++S
Sbjct: 169 YNVERAQRGIVYVDEIDKIS 188


>gi|291569833|dbj|BAI92105.1| cell division protein FtsH [Arthrospira platensis NIES-39]
          Length = 612

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 193 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 223


>gi|301111033|ref|XP_002904596.1| replication factor C subunit 1 [Phytophthora infestans T30-4]
 gi|262095913|gb|EEY53965.1| replication factor C subunit 1 [Phytophthora infestans T30-4]
          Length = 770

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 16/73 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFI---EAAKARA-------------EALDHVLFVGPPGLG 66
           +P+TL    G +E    LK ++   EA   +                   VL  GPPG+G
Sbjct: 218 KPQTLNHMIGNIELGKKLKTWLLDWEAMHVKGTKKVPFSTKLSENRGAKTVLLSGPPGIG 277

Query: 67  KTTLAQVVARELG 79
           KTT+A +VARE G
Sbjct: 278 KTTIANLVARECG 290


>gi|225621124|ref|YP_002722382.1| ATP-dependent protease ATP-binding subunit [Brachyspira
           hyodysenteriae WA1]
 gi|225215944|gb|ACN84678.1| ATP-dependent protease ATP-binding subunit [Brachyspira
           hyodysenteriae WA1]
          Length = 410

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 65/143 (45%), Gaps = 30/143 (20%)

Query: 6   GLLSRNVSQEDADISLLRPRT----LEEFT-GQ--------VEACSNLKVFIEAAKARAE 52
            +  +   ++D DI +L P+     L+E+  GQ        V   ++ K   + A+ + +
Sbjct: 48  NMQKKKSKEKDYDIKILPPKQIKSLLDEYVVGQDYAKKVLSVSVYNHYKRITQNAEDKND 107

Query: 53  A---LDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTN------- 102
                 +VL +GP G GKT LA+ +A+ L V F       + +AG +   + N       
Sbjct: 108 VEIEKSNVLLIGPTGSGKTLLARTLAKALNVPFAIADATTVTEAGYVGDDVENILLRLIQ 167

Query: 103 -------LEDRDVLFIDEIHRLS 118
                  L ++ +++IDEI ++S
Sbjct: 168 NADGDIKLAEKGIIYIDEIDKIS 190


>gi|57234811|ref|YP_181136.1| ATP-dependent metalloprotease FtsH [Dehalococcoides ethenogenes
           195]
 gi|57225259|gb|AAW40316.1| ATP-dependent metalloprotease FtsH [Dehalococcoides ethenogenes
           195]
          Length = 608

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           +L +GPPG GKT LA+ +A E GV F S SG    +   G  A+ + +L D+       +
Sbjct: 195 ILLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFDQAKKNAPCI 254

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 255 IFIDEI 260


>gi|51891601|ref|YP_074292.1| methanol dehydrogenase regulatory protein [Symbiobacterium
           thermophilum IAM 14863]
 gi|51855290|dbj|BAD39448.1| methanol dehydrogenase regulatory protein [Symbiobacterium
           thermophilum IAM 14863]
          Length = 318

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 69/156 (44%), Gaps = 24/156 (15%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTS-GPVIAKAGDLAALLTNLED--------- 105
           HVL  G PGL KT L + +A+ LGV+FR     P +  A  +   + N  D         
Sbjct: 40  HVLIEGVPGLAKTLLVRSLAQALGVSFRRIQFTPDLMPADVVGTTVFNPRDLTFEVRRGP 99

Query: 106 --RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
              ++L  DE++R     +  L  AME+ Q+ L     P           F +IA    +
Sbjct: 100 VFTNLLLADEVNRTPPKTQSALLEAMEERQVTLDGQPYPLPEP-------FMVIATQNPI 152

Query: 164 GLL-TNPLQ----DRFGIPIRLNFYEIEDLKTIVQR 194
               T PL     DRF + I++++   E+ + I++R
Sbjct: 153 EYEGTYPLPEAQLDRFLMKIQMDYPAAEEERAILER 188


>gi|115437804|ref|NP_001043385.1| Os01g0574500 [Oryza sativa Japonica Group]
 gi|75330321|sp|Q8LQJ8|FTSH5_ORYSJ RecName: Full=ATP-dependent zinc metalloprotease FTSH 5,
           mitochondrial; Short=OsFTSH5; Flags: Precursor
 gi|20521392|dbj|BAB91903.1| cell division protein ftsH (ftsH)-like [Oryza sativa Japonica
           Group]
 gi|113532916|dbj|BAF05299.1| Os01g0574500 [Oryza sativa Japonica Group]
 gi|125570901|gb|EAZ12416.1| hypothetical protein OsJ_02306 [Oryza sativa Japonica Group]
          Length = 715

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 266 VLLVGPPGTGKTMLARAIAGEAGVPFFSCSG 296


>gi|88801526|ref|ZP_01117054.1| ATP-dependent protease ATP-binding subunit [Polaribacter irgensii
           23-P]
 gi|88782184|gb|EAR13361.1| ATP-dependent protease ATP-binding subunit [Polaribacter irgensii
           23-P]
          Length = 411

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 62/130 (47%), Gaps = 29/130 (22%)

Query: 18  DISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARA-EALD---------HVLFVGP 62
           D++L +P+ ++EF      GQ E   ++ V +     R  +  D         +++ VG 
Sbjct: 57  DLTLKKPKEIKEFLDQYIIGQDETKRSMSVAVYNHYKRLLQTKDDDDVEIEKSNIVLVGE 116

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL----------EDRDV 108
            G GKT +A+ +AR L V F      V+ +AG    D+ ++L+ L            R +
Sbjct: 117 TGTGKTLVAKTIARMLNVPFAIVDATVLTQAGYVGEDVESILSKLLQTADYDVEKAQRGI 176

Query: 109 LFIDEIHRLS 118
           +FIDEI +++
Sbjct: 177 VFIDEIDKIA 186


>gi|307197038|gb|EFN78410.1| Replication factor C subunit 1 [Harpegnathos saltator]
          Length = 1045

 Score = 41.6 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 22/119 (18%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQV---EACSNLKVFIE------------AAKARAEA 53
           + NVS E   +   RP+TL++  GQ     +  NL V++             + +   ++
Sbjct: 492 TTNVSSEPL-VEKYRPKTLKQIIGQQGDRSSAHNLYVWLRDWHKNRQDPKSSSKQNNGQS 550

Query: 54  LDHVLFVGPPGLGKTTLAQVVARELG-----VNFRSTSGPVIAKAGDLAALLTNLEDRD 107
               L  G PG+GKTT AQ+V +ELG      N   T    + K   ++ LL+N   +D
Sbjct: 551 FKAALLSGSPGVGKTTTAQIVCKELGYDLLEFNASDTRSKTLLKE-QVSGLLSNTTMKD 608


>gi|302659175|ref|XP_003021281.1| hypothetical protein TRV_04594 [Trichophyton verrucosum HKI 0517]
 gi|291185172|gb|EFE40663.1| hypothetical protein TRV_04594 [Trichophyton verrucosum HKI 0517]
          Length = 747

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 35/72 (48%), Gaps = 3/72 (4%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           ADI  L     E  T  VE   N +++   ++    A   VL  GPPG GKT LA+ VA 
Sbjct: 486 ADIGSLGSVREELVTAIVEPIRNPEIY---SRVGISAPTGVLLWGPPGCGKTLLAKAVAN 542

Query: 77  ELGVNFRSTSGP 88
           E   NF S  GP
Sbjct: 543 ESRANFISIKGP 554



 Score = 39.3 bits (90), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL  GPPG GKT +A   A ELGV F + S P I
Sbjct: 218 VLLHGPPGCGKTMIANAFAAELGVPFIAISAPSI 251


>gi|255536256|ref|YP_003096627.1| ATP-dependent Clp protease ATP-binding subunit clpX
           [Flavobacteriaceae bacterium 3519-10]
 gi|255342452|gb|ACU08565.1| ATP-dependent Clp protease ATP-binding subunit clpX
           [Flavobacteriaceae bacterium 3519-10]
          Length = 393

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 67/145 (46%), Gaps = 30/145 (20%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARA-EALD-- 55
           +E   S + +  D+   L +P+ ++ F      GQ +A   L V +     R   A D  
Sbjct: 40  KENNTSESFAPADSIAELKKPKEIKTFLDQYVIGQDQAKKQLSVAVYNHYKRLLHAKDEN 99

Query: 56  --------HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL 103
                   +++ +G  G GKT LA+ +AREL V F      ++ +AG    D+ ++L+ L
Sbjct: 100 REVEIEKSNIIMIGETGTGKTLLAKTIARELNVPFCIVDATILTEAGYVGEDVESILSRL 159

Query: 104 ----------EDRDVLFIDEIHRLS 118
                      ++ ++FIDEI +++
Sbjct: 160 LMVADYDVEKAEKGIVFIDEIDKIA 184


>gi|226290677|gb|EEH46161.1| ribosome biogenesis ATPase RIX7 [Paracoccidioides brasiliensis
           Pb18]
          Length = 716

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 35/72 (48%), Gaps = 3/72 (4%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           ADI  L     E  T  VE   N +++   A+    A   VL  GPPG GKT LA+ VA 
Sbjct: 455 ADIGALGGVRDELSTAIVEPIRNPEIY---ARVGITAPTGVLLWGPPGCGKTLLAKAVAN 511

Query: 77  ELGVNFRSTSGP 88
           E   NF S  GP
Sbjct: 512 ESRANFISVKGP 523



 Score = 40.0 bits (92), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDL-AALLTNLEDRD-----V 108
           VL  GPPG GKT +A   A ELGV F + S P I    +G+   AL  + E+       +
Sbjct: 214 VLLHGPPGCGKTMIANAFAAELGVPFIAISAPSIVSGMSGESEKALREHFEEAKKVAPCL 273

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 274 IFIDEIDAIT 283


>gi|218188506|gb|EEC70933.1| hypothetical protein OsI_02523 [Oryza sativa Indica Group]
          Length = 702

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 253 VLLVGPPGTGKTMLARAIAGEAGVPFFSCSG 283


>gi|209525311|ref|ZP_03273853.1| ATP-dependent metalloprotease FtsH [Arthrospira maxima CS-328]
 gi|209494326|gb|EDZ94639.1| ATP-dependent metalloprotease FtsH [Arthrospira maxima CS-328]
          Length = 612

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 193 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 223


>gi|189485258|ref|YP_001956199.1| ATP-dependent protease La [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|302425076|sp|B1GZQ6|LON_UNCTG RecName: Full=Lon protease; AltName: Full=ATP-dependent protease La
 gi|170287217|dbj|BAG13738.1| ATP-dependent protease La [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
          Length = 802

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 16/26 (61%), Positives = 22/26 (84%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF 82
           + F+GPPG+GKT++A+ VAR LG NF
Sbjct: 363 LCFIGPPGVGKTSIAKSVARSLGRNF 388


>gi|91773970|ref|YP_566662.1| AAA family ATPase, CDC48 subfamily protein [Methanococcoides
           burtonii DSM 6242]
 gi|91712985|gb|ABE52912.1| VCP-like ATPase, AAA family [Methanococcoides burtonii DSM 6242]
          Length = 738

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT +AQ VA E   NF S  GP
Sbjct: 498 ILLYGPPGTGKTLIAQAVANEANANFISIKGP 529



 Score = 37.7 bits (86), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           V+  GPPG GKT +A+ VA E   NF   +GP I
Sbjct: 225 VILYGPPGTGKTLIAKAVANESRANFLYVAGPEI 258


>gi|3892650|dbj|BAA34546.1| ruvB [Clostridium histolyticum]
          Length = 54

 Score = 41.6 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 19/34 (55%), Positives = 25/34 (73%)

Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALD 55
          LRP+ L E+ GQ +  +NL VFI+AAK R E+LD
Sbjct: 21 LRPQKLNEYIGQKKVKTNLNVFIKAAKNRNESLD 54


>gi|326389783|ref|ZP_08211348.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter ethanolicus
           JW 200]
 gi|325994265|gb|EGD52692.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 510

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 53/121 (43%), Gaps = 16/121 (13%)

Query: 10  RNVSQEDADISLLRPR-TLEEFTGQVEACSNLKVFIE-------AAKARAEALDHVLFVG 61
            N+++ + D S  +   T ++  G  E    LKV I+         K  A+    +LF G
Sbjct: 65  NNITETNEDASHRKTNITFKDVAGLDEVIDELKVIIDFMTNTEKYNKMGAKIPKGILFYG 124

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DVLFIDE 113
           PPG GKT LA  +A E    F S SG       V   A  + AL    +     ++FIDE
Sbjct: 125 PPGTGKTLLATALAGETNSTFISASGSEFVEKYVGVGASRIRALFAKAKKSAPSIIFIDE 184

Query: 114 I 114
           I
Sbjct: 185 I 185


>gi|320450983|ref|YP_004203079.1| cell division protein FtsH [Thermus scotoductus SA-01]
 gi|320151152|gb|ADW22530.1| cell division protein FtsH [Thermus scotoductus SA-01]
          Length = 617

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 26/53 (49%), Positives = 30/53 (56%), Gaps = 3/53 (5%)

Query: 34  VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTS 86
           V+   N K ++E     AE    VL VGPPG GKT LA+ VA E GV F S S
Sbjct: 181 VDFLKNPKKYLELG---AEIPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSVS 230


>gi|300114316|ref|YP_003760891.1| ATP-dependent protease la [Nitrosococcus watsonii C-113]
 gi|299540253|gb|ADJ28570.1| ATP-dependent protease La [Nitrosococcus watsonii C-113]
          Length = 773

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 87/230 (37%), Gaps = 56/230 (24%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDL----------------AALL 100
           + FVGPPG+GKT++ Q +AR LG  F   S   +    +L                 A+ 
Sbjct: 348 LCFVGPPGVGKTSVGQSMARALGRKFERMSLGGLHDESELRGHRRTYIGAMPGRIIRAIR 407

Query: 101 TNLEDRDVLFIDEIHRL--------SIIVEEILYPA----MEDFQLDLMVGEGPSARSVK 148
                  +L +DEI +L        +  + EIL PA      D  LDL            
Sbjct: 408 RTGYQNPLLMLDEIDKLGRDFRGDPAAALLEILDPAQNAEFHDNYLDL-----------P 456

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR----------GAKL 198
            +LS+   +     +  +  PL DR  I +RL  Y  E+ + I +R          G   
Sbjct: 457 FDLSKIFFVTTANTLDTIPRPLLDRMEI-LRLPGYSDEEKQHIARRYLIGRQIREAGLSE 515

Query: 199 TGLAVTDEAACEIAMRS------RGTPRIAGRLLRRVRDFAEVAHAKTIT 242
             L++ DE    +  R       R   R+ GR+ R+V         + +T
Sbjct: 516 IQLSIPDETLSYLIRRYTREAGVRELERMLGRIARKVATQVATGQTQPVT 565


>gi|326790541|ref|YP_004308362.1| ATP-dependent metalloprotease FtsH [Clostridium lentocellum DSM
           5427]
 gi|326541305|gb|ADZ83164.1| ATP-dependent metalloprotease FtsH [Clostridium lentocellum DSM
           5427]
          Length = 579

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 54/112 (48%), Gaps = 19/112 (16%)

Query: 22  LRPRTLE----EFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTL 70
           + P+ L+       G VEA   ++  I       + AK  A     ++  GPPG GKT +
Sbjct: 139 IEPKDLKIDFSHIAGNVEAKEQVEDVIDFMKNPEQYAKMGARMPKGLILYGPPGTGKTLM 198

Query: 71  AQVVARELGVNFRSTSGP--VIAKAGDLAALLTNL------EDRDVLFIDEI 114
           A+ +A+E GV F S SG   V    G  A+ + ++       ++ V+FIDEI
Sbjct: 199 AKAIAKEAGVAFFSASGSDFVQMYVGVGASRVRDIFKEARKHEKAVIFIDEI 250


>gi|118590046|ref|ZP_01547450.1| ATP-dependent protease ATP-binding subunit [Stappia aggregata IAM
           12614]
 gi|118437543|gb|EAV44180.1| ATP-dependent protease ATP-binding subunit [Stappia aggregata IAM
           12614]
          Length = 421

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L VGP G GKT LAQ +AR L V F       + +AG +   + N+         
Sbjct: 110 AKSNILLVGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSAD 169

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDE+ ++S
Sbjct: 170 YNVERAQRGIVYIDEVDKIS 189


>gi|15899546|ref|NP_344151.1| AAA ATPase family protein [Sulfolobus solfataricus P2]
 gi|284174685|ref|ZP_06388654.1| AAA ATPase family protein [Sulfolobus solfataricus 98/2]
 gi|13816186|gb|AAK42941.1| AAA family ATPase [Sulfolobus solfataricus P2]
 gi|261601318|gb|ACX90921.1| AAA ATPase central domain protein [Sulfolobus solfataricus 98/2]
          Length = 585

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 27/42 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAA 98
           +L  GPPG GKT++A+ +A +L  NF   SG  ++ AG L A
Sbjct: 362 ILLYGPPGTGKTSIAKALANDLRFNFIELSGEEVSGAGPLDA 403



 Score = 37.7 bits (86), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 8/71 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELG-VNFRSTSGPVIAKA-GDLAALLTNLEDR------DV 108
           V+  GPPG GKTT+A+ +A +LG   F      +++K  G+   LL +  D+       V
Sbjct: 95  VILFGPPGTGKTTIAKALANKLGWAYFELRPSKILSKWYGESELLLDSFFDQVEINTPAV 154

Query: 109 LFIDEIHRLSI 119
           +FIDE+  L++
Sbjct: 155 VFIDELDSLAM 165


>gi|296803659|ref|XP_002842682.1| ribosome biogenesis ATPase RIX7 [Arthroderma otae CBS 113480]
 gi|238846032|gb|EEQ35694.1| ribosome biogenesis ATPase RIX7 [Arthroderma otae CBS 113480]
          Length = 743

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 35/72 (48%), Gaps = 3/72 (4%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           ADI  L     E  T  VE   N +++   ++    A   VL  GPPG GKT LA+ VA 
Sbjct: 482 ADIGSLGSVREELVTAIVEPIRNPEIY---SRVGISAPTGVLLWGPPGCGKTLLAKAVAN 538

Query: 77  ELGVNFRSTSGP 88
           E   NF S  GP
Sbjct: 539 ESRANFISIKGP 550



 Score = 39.3 bits (90), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL  GPPG GKT +A   A ELGV F + S P I
Sbjct: 213 VLLHGPPGCGKTMIANAFAAELGVPFIAISAPSI 246


>gi|221632324|ref|YP_002521545.1| metalloprotease FtsH [Thermomicrobium roseum DSM 5159]
 gi|310943092|sp|B9KXV3|FTSH1_THERP RecName: Full=ATP-dependent zinc metalloprotease FtsH 1
 gi|221157088|gb|ACM06215.1| metalloprotease FtsH [Thermomicrobium roseum DSM 5159]
          Length = 652

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL VGPPG GKT L++ VA E GV F S SG    +   G  A+ + +L D+       +
Sbjct: 199 VLLVGPPGTGKTLLSRAVAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFDQAKRNAPCI 258

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 259 VFIDEI 264


>gi|254455799|ref|ZP_05069228.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Candidatus
           Pelagibacter sp. HTCC7211]
 gi|207082801|gb|EDZ60227.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Candidatus
           Pelagibacter sp. HTCC7211]
          Length = 422

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L VGP G GKT LAQ +AR L V F       + +AG +   + N+         
Sbjct: 107 AKSNILLVGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASD 166

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDE+ ++S
Sbjct: 167 YNVEKAQRGIVYIDEVDKIS 186


>gi|119484306|ref|ZP_01618923.1| cell division protein [Lyngbya sp. PCC 8106]
 gi|119457780|gb|EAW38903.1| cell division protein [Lyngbya sp. PCC 8106]
          Length = 612

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 193 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 223


>gi|73669810|ref|YP_305825.1| cell division control protein 48 AAA family protein [Methanosarcina
           barkeri str. Fusaro]
 gi|72396972|gb|AAZ71245.1| cell division control protein 48 AAA family protein [Methanosarcina
           barkeri str. Fusaro]
          Length = 775

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT +A+ VA+E   NF S  GP I
Sbjct: 535 ILLYGPPGTGKTLIAKAVAKESNANFISVKGPEI 568



 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DV 108
           V+  GPPG GKT +A+ VA E G +F   +GP I     G+    L  + +        V
Sbjct: 235 VILYGPPGTGKTLIAKAVANESGASFHYIAGPEIVGKFYGESEERLRKIFEEATQDAPSV 294

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 295 IFIDEIDSIA 304


>gi|71986063|ref|NP_498750.2| hypothetical protein F44B9.8 [Caenorhabditis elegans]
 gi|55584161|sp|P34429|RFC5_CAEEL RecName: Full=Probable replication factor C subunit 5; AltName:
          Full=Activator 1 subunit 5
 gi|52839833|gb|AAK95878.2|L23648_8 Hypothetical protein F44B9.8 [Caenorhabditis elegans]
          Length = 368

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP  L+E     +    L  FIE        L H+LF GPPG GKTT     AR++
Sbjct: 36 RPSKLDELVAHEQIVKTLTKFIEN-----RTLPHLLFYGPPGTGKTTTVLAAARQM 86


>gi|16082630|ref|NP_394950.1| replication factor C small subunit [Thermoplasma acidophilum DSM
           1728]
 gi|73920752|sp|Q9HI47|RFCS_THEAC RecName: Full=Replication factor C small subunit; Short=RFC small
           subunit; AltName: Full=Clamp loader small subunit
          Length = 318

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 95/230 (41%), Gaps = 37/230 (16%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL---- 78
           RP++L E  G+ E    LK F+E  +     + H+LF G  G GKT+ A  +A EL    
Sbjct: 10  RPKSLSEIYGEDENIQKLKSFVEKKE-----IPHLLFAGSVGTGKTSTAIALAIELFGDS 64

Query: 79  ------GVNFRSTSG--PVIAKAGDLAALL-TNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
                  +N  + +G   +  K  D+A +  +N     +LF+DE  +L+   +  L   M
Sbjct: 65  WKENMVEMNASNENGIDVIRNKIKDIARIKPSNPLGFKILFLDEADQLTAEAQAALRRTM 124

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           E +                   +RF  I +      +  P+Q R  + +R      E + 
Sbjct: 125 EIYS----------------ETTRF--IFSCNYSSKIIPPIQSR-TVVMRFRPVPDEYIS 165

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
             +Q  AK  G  + +E+   +   S G  R A  +L+ V    E++  K
Sbjct: 166 RKLQEIAKNEGFQIDEESMHALVEVSAGDMRKAINVLQAVYTSGEISPKK 215


>gi|218295185|ref|ZP_03496021.1| ATP-dependent metalloprotease FtsH [Thermus aquaticus Y51MC23]
 gi|218244388|gb|EED10913.1| ATP-dependent metalloprotease FtsH [Thermus aquaticus Y51MC23]
          Length = 615

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 26/53 (49%), Positives = 30/53 (56%), Gaps = 3/53 (5%)

Query: 34  VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTS 86
           V+   N K ++E     AE    VL VGPPG GKT LA+ VA E GV F S S
Sbjct: 181 VDFLKNPKKYLELG---AEIPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSVS 230


>gi|168187052|ref|ZP_02621687.1| putative Cell division protease FtsH homolog [Clostridium botulinum
           C str. Eklund]
 gi|169295060|gb|EDS77193.1| putative Cell division protease FtsH homolog [Clostridium botulinum
           C str. Eklund]
          Length = 657

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 35/69 (50%), Gaps = 7/69 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH-------VLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  E    L+  ++  K   + LD        +L VGPPG GKT LA+ VA E 
Sbjct: 161 TFKDVAGADEEKGELEEIVDFLKEPKKYLDMGARIPKGILLVGPPGTGKTLLAKAVAGEA 220

Query: 79  GVNFRSTSG 87
           GV F S SG
Sbjct: 221 GVPFFSISG 229


>gi|158335586|ref|YP_001516758.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris
           marina MBIC11017]
 gi|158305827|gb|ABW27444.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris
           marina MBIC11017]
          Length = 611

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 192 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 222


>gi|90425061|ref|YP_533431.1| vesicle-fusing ATPase [Rhodopseudomonas palustris BisB18]
 gi|90107075|gb|ABD89112.1| Vesicle-fusing ATPase [Rhodopseudomonas palustris BisB18]
          Length = 647

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 8/82 (9%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL------ 103
           EA   VL  GPPG GKT +A+ VA E GV F   +GP I +   G+   +L  +      
Sbjct: 141 EAPKGVLLYGPPGCGKTLIARTVACEAGVYFLHVNGPEIIQKHYGESEEMLRRIFADARK 200

Query: 104 EDRDVLFIDEIHRLSIIVEEIL 125
           +   ++F DEI  ++   E +L
Sbjct: 201 QPAAIIFFDEIDAIAPNRETVL 222


>gi|70606569|ref|YP_255439.1| SAV protein-like [Sulfolobus acidocaldarius DSM 639]
 gi|30088847|gb|AAP13472.1| AAA family ATPase [Sulfolobus acidocaldarius]
 gi|68567217|gb|AAY80146.1| SAV protein-like [Sulfolobus acidocaldarius DSM 639]
          Length = 773

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT LA+ VA E G NF +  GP I
Sbjct: 506 ILLFGPPGTGKTMLAKAVATESGANFIAVRGPEI 539



 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 8/77 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL-EDRD-----V 108
           +L  GPPG+GKT LA+ VA E    F S +GP I     G+    L  + ED       +
Sbjct: 233 ILLYGPPGVGKTLLAKAVANETDAYFTSINGPEIMSKFYGESEQRLREIFEDAKKHAPAI 292

Query: 109 LFIDEIHRLSIIVEEIL 125
           +FIDEI  ++   +E++
Sbjct: 293 IFIDEIDAIAPKRDEVI 309


>gi|73748233|ref|YP_307472.1| ATP-dependent metalloprotease FtsH [Dehalococcoides sp. CBDB1]
 gi|73659949|emb|CAI82556.1| ATP-dependent metalloprotease FtsH [Dehalococcoides sp. CBDB1]
          Length = 608

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           +L +GPPG GKT LA+ +A E GV F S SG    +   G  A+ + +L D+       +
Sbjct: 195 ILLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFDQAKKNAPCI 254

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 255 IFIDEI 260


>gi|86143055|ref|ZP_01061477.1| putative methanol denhydrogenase-related protein [Leeuwenhoekiella
           blandensis MED217]
 gi|85830500|gb|EAQ48959.1| putative methanol denhydrogenase-related protein [Leeuwenhoekiella
           blandensis MED217]
          Length = 347

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 38/169 (22%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKAGDLAALLTNLEDRD------- 107
           HVL  G PG+ KT  A++ A+ L   F R    P +  +  L   + N++  D       
Sbjct: 72  HVLIEGVPGIAKTVTAKLFAKTLSTGFSRIQFTPDLMPSDVLGTSVLNMKTSDFEFKHGP 131

Query: 108 ----VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
               ++ IDEI+R     +  L+  ME+ Q+ +           + +L +  ++ AT   
Sbjct: 132 IFSNIVLIDEINRAPAKTQAALFEVMEERQITI--------DGHRYDLEKPFMVLAT--- 180

Query: 164 GLLTNPLQ------------DRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
               NP++            DRF   I++N+ ++ED   I++   + TG
Sbjct: 181 ---QNPIEQEGTYALPEAQLDRFLFKIKVNYPDLEDEIEILKSQNERTG 226


>gi|113477219|ref|YP_723280.1| FtsH peptidase [Trichodesmium erythraeum IMS101]
 gi|110168267|gb|ABG52807.1| FtsH peptidase homologue, chloroplast. Metallo peptidase. MEROPS
           family M41 [Trichodesmium erythraeum IMS101]
          Length = 613

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 194 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 224


>gi|321476962|gb|EFX87921.1| hypothetical protein DAPPUDRAFT_305607 [Daphnia pulex]
          Length = 464

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 1/85 (1%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFI-EAAKARAEALDHVLFVGPPGL 65
           +L R++ Q+D ++       L E    +E    L +++ E  K        VL VGPPG 
Sbjct: 168 MLERDIVQKDPNVHWADIADLAEAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGT 227

Query: 66  GKTTLAQVVARELGVNFRSTSGPVI 90
           GKT LA+ VA E G  F + S   +
Sbjct: 228 GKTMLAKAVATECGTTFFNVSSSTL 252


>gi|320535321|ref|ZP_08035440.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Treponema
           phagedenis F0421]
 gi|320147821|gb|EFW39318.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Treponema
           phagedenis F0421]
          Length = 414

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALL----------T 101
           +VL VGP G GKT LA+ +A+++ V F       + +AG    D+  +L           
Sbjct: 111 NVLLVGPTGSGKTLLAKTLAQKMKVPFAIADATTLTEAGYVGEDVENILLKLIQNAGGDI 170

Query: 102 NLEDRDVLFIDEIHRLS 118
           N  +R ++FIDEI ++S
Sbjct: 171 NAAERGIIFIDEIDKIS 187


>gi|302334898|ref|YP_003800105.1| membrane protease FtsH catalytic subunit [Olsenella uli DSM 7084]
 gi|301318738|gb|ADK67225.1| membrane protease FtsH catalytic subunit [Olsenella uli DSM 7084]
          Length = 660

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 224 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 254


>gi|302788426|ref|XP_002975982.1| hypothetical protein SELMODRAFT_104715 [Selaginella moellendorffii]
 gi|300156258|gb|EFJ22887.1| hypothetical protein SELMODRAFT_104715 [Selaginella moellendorffii]
          Length = 580

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 92/228 (40%), Gaps = 43/228 (18%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDR--- 106
           E +  +L  GPPG GK+ LA+ +A E  V F   S P  V   +G+  A L  L      
Sbjct: 39  EHMKALLLHGPPGCGKSLLAEAIANEASVPFFKVSAPEVVSGTSGESEAKLRTLFSEAFR 98

Query: 107 ---DVLFIDEIHRLSI------------IVEEILYPAMEDFQLDLMVGEGPSARSVKINL 151
               ++FIDE+  +              IV +++   M++        E     S K  L
Sbjct: 99  VAPAIIFIDEVDAICSKRESAQREMERRIVTQLMV-CMDEIDYAPRGSESEGGDSNK--L 155

Query: 152 SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEI 211
            R  +IAAT R   L   L+ RF   I L   ++ D K  +Q    LT LA       E 
Sbjct: 156 RRLLVIAATNRPEALDQALRRRFDREICL---KVPDEKARLQ---ILTVLASKLRLDGEF 209

Query: 212 AMR--SRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257
             +  +R TP   G            A  K +T+E   AA+ R+A  +
Sbjct: 210 DFKAIARRTPGFVG------------ADLKVLTKEAGVAAIRRIAAKR 245


>gi|298372621|ref|ZP_06982611.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroidetes
           oral taxon 274 str. F0058]
 gi|298275525|gb|EFI17076.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroidetes
           oral taxon 274 str. F0058]
          Length = 404

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 29/125 (23%)

Query: 23  RPRTLEEF-----TGQVEACSNLKVFIEAAKARAEAL----------DHVLFVGPPGLGK 67
           +PR ++ F      GQ EA   L V +     R   L           +++ VG  G GK
Sbjct: 59  KPREIKAFLDQYVIGQDEAKKFLSVAVYNHYKRISQLTDDNDVEIEKSNIIMVGATGTGK 118

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL----------EDRDVLFIDE 113
           T LA+ +A++L V F      V+ +AG    D+ ++LT L           ++ ++FIDE
Sbjct: 119 TLLARTIAQKLHVPFTIVDATVLTEAGYVGEDIESILTRLLQAADYNVAAAEKGIVFIDE 178

Query: 114 IHRLS 118
           I +++
Sbjct: 179 IDKIA 183


>gi|301116741|ref|XP_002906099.1| peroxisome assembly factor, putative [Phytophthora infestans T30-4]
 gi|262109399|gb|EEY67451.1| peroxisome assembly factor, putative [Phytophthora infestans T30-4]
          Length = 893

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 17/32 (53%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT LA+ +A E  +NF S  GP
Sbjct: 626 ILLYGPPGTGKTLLAKAIATECNLNFLSVKGP 657


>gi|242310140|ref|ZP_04809295.1| zinc metallopeptidase [Helicobacter pullorum MIT 98-5489]
 gi|239523437|gb|EEQ63303.1| zinc metallopeptidase [Helicobacter pullorum MIT 98-5489]
          Length = 642

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108
           VL VGPPG GKT LA+ VA E  V F S SG       V   A  +  L  N +     +
Sbjct: 216 VLLVGPPGTGKTLLAKAVAGEANVPFFSVSGSSFIEMFVGVGASRVRDLFENAKKNAPSI 275

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 276 IFIDEI 281


>gi|210630009|ref|ZP_03296210.1| hypothetical protein COLSTE_00094 [Collinsella stercoris DSM 13279]
 gi|210160721|gb|EEA91692.1| hypothetical protein COLSTE_00094 [Collinsella stercoris DSM 13279]
          Length = 705

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108
           VL VGPPG GKT LA+ VA E GV F + SG       V   A  +  L  + +++   +
Sbjct: 249 VLLVGPPGTGKTLLAKAVAGEAGVPFFTISGSEFVEMFVGVGASRVRDLFKSAKEQAPSI 308

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 309 IFIDEI 314


>gi|220927544|ref|YP_002504453.1| ATP-dependent metalloprotease FtsH [Clostridium cellulolyticum H10]
 gi|310943126|sp|B8I4B9|FTSH_CLOCE RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|219997872|gb|ACL74473.1| ATP-dependent metalloprotease FtsH [Clostridium cellulolyticum H10]
          Length = 619

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 34/69 (49%), Gaps = 7/69 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78
           T E   G  E    L   +E  KA  + ++        VL VGPPG GKT LA+ V+ E 
Sbjct: 162 TFENVAGADEEKEELAEIVEFLKAPKKFVELGARIPKGVLLVGPPGTGKTLLAKAVSGEA 221

Query: 79  GVNFRSTSG 87
           GV F S SG
Sbjct: 222 GVPFFSISG 230


>gi|110669061|ref|YP_658872.1| AAA-type ATPase (transitional ATPase homolog) [Haloquadratum
           walsbyi DSM 16790]
 gi|109626808|emb|CAJ53276.1| AAA-type ATPase (transitional ATPase homolog) [Haloquadratum
           walsbyi DSM 16790]
          Length = 742

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 8/76 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNL------EDRDV 108
           VL  GPPG GKT LA+ VA E   +F S +GP +I+K  G+    L  +      E   +
Sbjct: 226 VLLHGPPGTGKTLLAKAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDATEESPSI 285

Query: 109 LFIDEIHRLSIIVEEI 124
           +FIDE+  ++   E++
Sbjct: 286 IFIDELDSIAPKREDV 301



 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 19/37 (51%), Positives = 22/37 (59%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +A   VL  GPPG GKT +A+ VA E   NF S  GP
Sbjct: 494 DAPKGVLLYGPPGTGKTLIAKAVANETNANFISVRGP 530


>gi|33860785|ref|NP_892346.1| cell division protein FtsH2 [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33633727|emb|CAE18685.1| cell division protein FtsH2 [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 618

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 199 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 229


>gi|116753844|ref|YP_842962.1| AAA family ATPase, CDC48 subfamily protein [Methanosaeta
           thermophila PT]
 gi|116665295|gb|ABK14322.1| AAA family ATPase, CDC48 subfamily [Methanosaeta thermophila PT]
          Length = 719

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 8/81 (9%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GD----LAALLTNLED 105
           EA   VL  GPPG GKT LA+ +A E   +F + SGP I     G+    L  L    E+
Sbjct: 210 EAPKGVLLHGPPGTGKTLLARALASETNAHFETLSGPEIMSKYYGESEERLRQLFKTAEE 269

Query: 106 R--DVLFIDEIHRLSIIVEEI 124
               ++ IDEI  ++   EE+
Sbjct: 270 NAPSIILIDEIDSIAPKREEV 290



 Score = 39.7 bits (91), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 488 ILLYGPPGTGKTLLAKAVATESQANFISVKGP 519


>gi|326482765|gb|EGE06775.1| ribosome biogenesis ATPase RIX7 [Trichophyton equinum CBS 127.97]
          Length = 743

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 35/72 (48%), Gaps = 3/72 (4%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           ADI  L     E  T  VE   N +++   ++    A   VL  GPPG GKT LA+ VA 
Sbjct: 482 ADIGSLGSVREELVTAIVEPIRNPEIY---SRVGISAPTGVLLWGPPGCGKTLLAKAVAN 538

Query: 77  ELGVNFRSTSGP 88
           E   NF S  GP
Sbjct: 539 ESRANFISIKGP 550



 Score = 38.9 bits (89), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL  GPPG GKT +A   A ELGV F + S P I
Sbjct: 214 VLLHGPPGCGKTMIANAFAAELGVPFIAISAPSI 247


>gi|326470013|gb|EGD94022.1| ribosome biogenesis ATPase RIX7 [Trichophyton tonsurans CBS 112818]
          Length = 743

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 35/72 (48%), Gaps = 3/72 (4%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           ADI  L     E  T  VE   N +++   ++    A   VL  GPPG GKT LA+ VA 
Sbjct: 482 ADIGSLGSVREELVTAIVEPIRNPEIY---SRVGISAPTGVLLWGPPGCGKTLLAKAVAN 538

Query: 77  ELGVNFRSTSGP 88
           E   NF S  GP
Sbjct: 539 ESRANFISIKGP 550



 Score = 38.9 bits (89), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL  GPPG GKT +A   A ELGV F + S P I
Sbjct: 214 VLLHGPPGCGKTMIANAFAAELGVPFIAISAPSI 247


>gi|323475288|gb|ADX85894.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus REY15A]
 gi|323478013|gb|ADX83251.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus HVE10/4]
          Length = 769

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT LA+ VA E G NF +  GP I
Sbjct: 502 ILLFGPPGTGKTMLAKAVATESGANFIAVRGPEI 535



 Score = 39.7 bits (91), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 8/77 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL-EDRD-----V 108
           +L  GPPG+GKT LA+ +A E    F S +GP I     G+    L  + ED       +
Sbjct: 229 ILLYGPPGVGKTLLAKAIANETDAYFTSINGPEIMSKFYGESEQRLREIFEDAKKHAPAI 288

Query: 109 LFIDEIHRLSIIVEEIL 125
           +F+DEI  ++   +E++
Sbjct: 289 IFVDEIDAIAPKRDEVI 305


>gi|301165513|emb|CBW25084.1| lon ATP-dependent protease [Bacteriovorax marinus SJ]
          Length = 828

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 72/174 (41%), Gaps = 37/174 (21%)

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAKAGDLAALLTNLE- 104
           GPPG+GKT+L + VA  LG  F   S                 V A  G +   L  +E 
Sbjct: 388 GPPGVGKTSLGRSVAEALGRKFYRFSLGGMRDEAEIKGHRRTYVGAMPGRIIQALKRVEV 447

Query: 105 DRDVLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTL 156
           +  V+ +DEI +L    +        E+L P      +D       +   +  +LS+   
Sbjct: 448 NNPVIMLDEIDKLGQSFQGDPASALLEVLDPEQNSTFID-------NYLDIPFDLSKVLF 500

Query: 157 IAATTRVGLLTNPLQDRFGIPIRLNFYEIED-----LKTIVQRGAKLTGLAVTD 205
           IA    +G +  PL DR  + I L+ Y IE+      K ++ +  K  GL  +D
Sbjct: 501 IATANYLGDIPEPLLDRMEV-IELSGYTIEEKVSIATKWVIPKQLKKHGLVKSD 553


>gi|284165453|ref|YP_003403732.1| ATPase AAA [Haloterrigena turkmenica DSM 5511]
 gi|284015108|gb|ADB61059.1| AAA family ATPase, CDC48 subfamily [Haloterrigena turkmenica DSM
           5511]
          Length = 743

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 8/76 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNL------EDRDV 108
           VL  GPPG GKT LA+ VA E   +F S +GP +I+K  G+    L  +      E   +
Sbjct: 226 VLLHGPPGTGKTLLAKAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDATEESPSI 285

Query: 109 LFIDEIHRLSIIVEEI 124
           +FIDE+  ++   E++
Sbjct: 286 IFIDELDSIAPKREDV 301



 Score = 40.4 bits (93), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT +A+ VA E   NF S  GP
Sbjct: 499 VLLYGPPGTGKTLMAKAVANETNANFISVRGP 530


>gi|281208808|gb|EFA82983.1| peroxisomal biogenesis factor 1 [Polysphondylium pallidum PN500]
          Length = 1212

 Score = 41.6 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 18/32 (56%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT LA  +A E G+NF S  GP
Sbjct: 892 LLLYGPPGCGKTMLASSIAGEFGLNFISVKGP 923


>gi|289432284|ref|YP_003462157.1| ATP-dependent metalloprotease FtsH [Dehalococcoides sp. GT]
 gi|288946004|gb|ADC73701.1| ATP-dependent metalloprotease FtsH [Dehalococcoides sp. GT]
          Length = 604

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           +L +GPPG GKT LA+ +A E GV F S SG    +   G  A+ + +L D+       +
Sbjct: 191 ILLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFDQAKKNAPCI 250

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 251 IFIDEI 256


>gi|255024485|ref|ZP_05296471.1| cell division protein FtsH [Listeria monocytogenes FSL J1-208]
          Length = 240

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 35/67 (52%), Gaps = 8/67 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 172 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 231

Query: 109 LFIDEIH 115
           +FIDEI 
Sbjct: 232 IFIDEID 238


>gi|257057516|ref|YP_003135348.1| membrane protease FtsH catalytic subunit [Saccharomonospora viridis
           DSM 43017]
 gi|256587388|gb|ACU98521.1| membrane protease FtsH catalytic subunit [Saccharomonospora viridis
           DSM 43017]
          Length = 798

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 33/59 (55%), Gaps = 6/59 (10%)

Query: 34  VEACSNLKVFIEAAKARAEAL-----DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VE    +K F++   AR +AL       VL  GPPG GKT LA+ VA E GV F + SG
Sbjct: 180 VEELQEIKDFLQNP-ARYQALGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYTISG 237


>gi|254526296|ref|ZP_05138348.1| ATP-dependent metallopeptidase HflB subfamily protein
           [Prochlorococcus marinus str. MIT 9202]
 gi|221537720|gb|EEE40173.1| ATP-dependent metallopeptidase HflB subfamily protein
           [Prochlorococcus marinus str. MIT 9202]
          Length = 617

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 198 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 228


>gi|218245163|ref|YP_002370534.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8801]
 gi|257058189|ref|YP_003136077.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8802]
 gi|218165641|gb|ACK64378.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8801]
 gi|256588355|gb|ACU99241.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8802]
          Length = 616

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 197 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 227


>gi|229581482|ref|YP_002839881.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus
           Y.N.15.51]
 gi|228012198|gb|ACP47959.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus
           Y.N.15.51]
          Length = 769

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT LA+ VA E G NF +  GP I
Sbjct: 502 ILLFGPPGTGKTMLAKAVATESGANFIAVRGPEI 535



 Score = 39.7 bits (91), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 8/77 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL-EDRD-----V 108
           +L  GPPG+GKT LA+ +A E    F S +GP I     G+    L  + ED       +
Sbjct: 229 ILLYGPPGVGKTLLAKAIANETDAYFTSINGPEIMSKFYGESEQRLREIFEDAKKHAPAI 288

Query: 109 LFIDEIHRLSIIVEEIL 125
           +F+DEI  ++   +E++
Sbjct: 289 IFVDEIDAIAPKRDEVI 305


>gi|126695586|ref|YP_001090472.1| cell division protein FtsH2 [Prochlorococcus marinus str. MIT 9301]
 gi|126542629|gb|ABO16871.1| cell division protein FtsH2 [Prochlorococcus marinus str. MIT 9301]
          Length = 617

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 198 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 228


>gi|118576898|ref|YP_876641.1| replication factor C small subunit [Cenarchaeum symbiosum A]
 gi|118195419|gb|ABK78337.1| replication factor C small subunit [Cenarchaeum symbiosum A]
          Length = 311

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 97/214 (45%), Gaps = 28/214 (13%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+ L +   Q E   +    IEA    A  + H+LF G  G+GKTT A  +AR++    
Sbjct: 7   RPKKLADVVDQKEIIGS----IEALLKNAGEMPHLLFSGSAGVGKTTTALCIARQV---- 58

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFI-DEIHRLSIIV--EEILYPAMEDFQLDLMVG 139
               GP I    D    L   ++R +  + D++ R S     EEI +  +   + D M  
Sbjct: 59  ---LGPHIQ---DNLLELNASDERGIGMVRDKVKRFSNFAAFEEIPFKIIILDEADEMTA 112

Query: 140 EGPSA--RSVK--INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ-- 193
           +  +A  R+++    + RF ++A    +  + +P+Q R  +     F  I + + + Q  
Sbjct: 113 DAQTALRRTIEDASKICRFIIVA--NNISKIIDPIQSRCAV---YKFTSIPEKEAMAQLK 167

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
           + AK    ++ +E   E+  +S G  R A  +L+
Sbjct: 168 KIAKGEKASIDEEGLKEVYEQSEGDLRHAINILQ 201


>gi|160872052|ref|ZP_02062184.1| DNA polymerase III subunit tau [Rickettsiella grylli]
 gi|159120851|gb|EDP46189.1| DNA polymerase III subunit tau [Rickettsiella grylli]
          Length = 523

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 56/127 (44%), Gaps = 36/127 (28%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP++ +E  GQ   C  LK  +     R + + H  LF G  G+GKTTLA+++A+ L   
Sbjct: 11  RPQSFDELIGQESTCRILKNAL-----RTQRIHHAYLFTGTRGVGKTTLARLLAKCLNCQ 65

Query: 82  FRSTSGPV----------IAKAGDL----AALLTNLED-RDVL---------------FI 111
            + T  P             +  DL    AA  T +ED RD+L                I
Sbjct: 66  TQITPEPCNQCISCQAIHANRFTDLIEVDAASRTKVEDTRDLLADVHYTPSQGRYKIYLI 125

Query: 112 DEIHRLS 118
           DE+H LS
Sbjct: 126 DEVHMLS 132


>gi|393291|gb|AAA16622.1| ATPase [Yarrowia lipolytica]
          Length = 1025

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 17/32 (53%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +LF GPPG GKT LA+ +A    +NF S  GP
Sbjct: 756 ILFYGPPGTGKTLLAKAIATTFSLNFFSVKGP 787


>gi|297583715|ref|YP_003699495.1| ATP-dependent protease La [Bacillus selenitireducens MLS10]
 gi|297142172|gb|ADH98929.1| ATP-dependent protease La [Bacillus selenitireducens MLS10]
          Length = 774

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 75/191 (39%), Gaps = 40/191 (20%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA---GDLAALLTNLEDR------ 106
           +   GPPG+GKT+LA+ VAR L   F R + G V  +A   G     +  +  R      
Sbjct: 349 LCLTGPPGVGKTSLARSVARSLDRKFVRMSLGGVRDEAEIRGHRRTYVGAMPGRIIQGMK 408

Query: 107 ------DVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152
                  V  +DEI +L        S  + E+L P   +   D  + E         +LS
Sbjct: 409 KAGTMNPVFLLDEIDKLVHDFRGDPSASLLEVLDPEQNNTFSDHFIEE-------PYDLS 461

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL---------KTIVQRGAKLTGLAV 203
           +   I     +G +  PL+DR  I     + E+E           K I + G     L V
Sbjct: 462 KVMFITTANNIGAIPAPLRDRMEIIHIPGYTEVEKKEIAKRYLLPKQIKEHGLSKGKLQV 521

Query: 204 TDEAACEIAMR 214
            DEA  ++  R
Sbjct: 522 KDEAILKVVRR 532


>gi|256846388|ref|ZP_05551845.1| DNA polymerase III, subunits gamma and tau [Fusobacterium sp.
           3_1_36A2]
 gi|256718157|gb|EEU31713.1| DNA polymerase III, subunits gamma and tau [Fusobacterium sp.
           3_1_36A2]
          Length = 484

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 111/248 (44%), Gaps = 35/248 (14%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP +  E +G+ E   +LK+ ++  K+ A A    LF GP G+GKTT+A+++A+  GVN 
Sbjct: 10  RPSSFSEVSGENEIVKSLKLSLKN-KSMAHAY---LFSGPRGVGKTTIARLIAK--GVNC 63

Query: 83  RS--TSGPVIAKAGDLAAL-------LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
            +   +G    +  +  A+       L  ++      IDEI  L    E+I Y  +E  +
Sbjct: 64  LNLKENGEPCNECKNCKAINEGRFSDLIEIDAASNRSIDEIRSLK---EKINYQPVEGLK 120

Query: 134 LDLMVGEGPSARSVKINLSRFTL---------IAATTRVGLLTNPLQDRFGIPIRLNF-- 182
              ++ E         N    TL         I ATT +  +   +  R     R +F  
Sbjct: 121 KVYIIDEAHMLTKEAFNALLKTLEEPPAHVMFILATTELEKILPTIISRCQ---RYDFKP 177

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            ++E++K  ++   K   L++TD+    I   S G+ R +  +L R+      A+ K I 
Sbjct: 178 LDLEEMKAGLEHILKEENLSMTDDVYSVIYENSSGSMRDSISILERL---IVTANGKEID 234

Query: 243 REIADAAL 250
            +IA+  L
Sbjct: 235 LKIAEDTL 242


>gi|237753269|ref|ZP_04583749.1| zinc metallopeptidase [Helicobacter winghamensis ATCC BAA-430]
 gi|229375536|gb|EEO25627.1| zinc metallopeptidase [Helicobacter winghamensis ATCC BAA-430]
          Length = 642

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNL--EDRDV 108
           VL VGPPG GKT LA+ VA E  V F S SG       V   A  +  L  N   E   +
Sbjct: 216 VLLVGPPGTGKTLLAKAVAGEANVPFFSVSGSSFIEMFVGVGASRVRDLFENAKKEAPSI 275

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 276 IFIDEI 281


>gi|227828221|ref|YP_002830001.1| ATPase AAA [Sulfolobus islandicus M.14.25]
 gi|227830979|ref|YP_002832759.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus L.S.2.15]
 gi|229579858|ref|YP_002838257.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus
           Y.G.57.14]
 gi|229585449|ref|YP_002843951.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus M.16.27]
 gi|238620412|ref|YP_002915238.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus M.16.4]
 gi|284998468|ref|YP_003420236.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus L.D.8.5]
 gi|227457427|gb|ACP36114.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus L.S.2.15]
 gi|227460017|gb|ACP38703.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus M.14.25]
 gi|228010573|gb|ACP46335.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus
           Y.G.57.14]
 gi|228020499|gb|ACP55906.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus M.16.27]
 gi|238381482|gb|ACR42570.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus M.16.4]
 gi|284446364|gb|ADB87866.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus L.D.8.5]
          Length = 769

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT LA+ VA E G NF +  GP I
Sbjct: 502 ILLFGPPGTGKTMLAKAVATESGANFIAVRGPEI 535



 Score = 39.7 bits (91), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 8/77 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL-EDRD-----V 108
           +L  GPPG+GKT LA+ +A E    F S +GP I     G+    L  + ED       +
Sbjct: 229 ILLYGPPGVGKTLLAKAIANETDAYFTSINGPEIMSKFYGESEQRLREIFEDAKKHAPAI 288

Query: 109 LFIDEIHRLSIIVEEIL 125
           +F+DEI  ++   +E++
Sbjct: 289 IFVDEIDAIAPKRDEVI 305


>gi|303289655|ref|XP_003064115.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226454431|gb|EEH51737.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 613

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F  TSG
Sbjct: 155 VLLVGPPGTGKTMLARAVAGEAGVPFFYTSG 185


>gi|281420562|ref|ZP_06251561.1| putative cell division protein FtsH [Prevotella copri DSM 18205]
 gi|281405335|gb|EFB36015.1| putative cell division protein FtsH [Prevotella copri DSM 18205]
          Length = 695

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 48/104 (46%), Gaps = 15/104 (14%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ  A   +K  ++  K   +  D         L VGPPG GKT LA+ VA E 
Sbjct: 197 TFKDVAGQEGAKQEVKEIVDFLKNPQKYTDLGGKIPKGALLVGPPGTGKTLLAKAVAGEA 256

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEI 114
           GV F S SG       V   A  +  L    +++   ++FIDEI
Sbjct: 257 GVPFFSMSGSDFVEMFVGVGASRVRDLFRQAKEKSPCIIFIDEI 300


>gi|148243292|ref|YP_001228449.1| cell division protein FtsH [Synechococcus sp. RCC307]
 gi|147851602|emb|CAK29096.1| Cell division protein FtsH [Synechococcus sp. RCC307]
          Length = 618

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 199 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 229


>gi|147669015|ref|YP_001213833.1| ATP-dependent metalloprotease FtsH [Dehalococcoides sp. BAV1]
 gi|146269963|gb|ABQ16955.1| membrane protease FtsH catalytic subunit [Dehalococcoides sp. BAV1]
          Length = 604

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           +L +GPPG GKT LA+ +A E GV F S SG    +   G  A+ + +L D+       +
Sbjct: 191 ILLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFDQAKKNAPCI 250

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 251 IFIDEI 256


>gi|126653288|ref|ZP_01725399.1| cell division protein [Bacillus sp. B14905]
 gi|126589962|gb|EAZ84091.1| cell division protein [Bacillus sp. B14905]
          Length = 660

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           +L VGPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 185 ILLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 244

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 245 IFIDEI 250


>gi|145544529|ref|XP_001457949.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124425768|emb|CAK90552.1| unnamed protein product [Paramecium tetraurelia]
          Length = 526

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 70/162 (43%), Gaps = 25/162 (15%)

Query: 46  AAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA-------- 97
           A ++++  L ++LF G PG GKT  A+++A   G++F   SG  I K G+ A        
Sbjct: 276 AKQSQSAPLRNLLFHGQPGTGKTLFAKLLAYNSGLHFAIISGGDIEKLGEQAVPEIDKLF 335

Query: 98  ALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ----LDLMVGEGPSARSVKINLSR 153
           A   +     ++FIDE        E I Y      Q    L   + +  +A        +
Sbjct: 336 AWCQSTPKGTLIFIDE-------AEAIFYKRSSSKQTSAALSTFLAQTSAAS------KK 382

Query: 154 FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           ++LI AT     L   + DR    ++ ++   E    ++++G
Sbjct: 383 YSLILATNLPNKLDEAILDRIDQIVKFDYLNEEQRVKLLKKG 424


>gi|123965493|ref|YP_001010574.1| cell division protein FtsH2 [Prochlorococcus marinus str. MIT 9515]
 gi|123199859|gb|ABM71467.1| cell division protein FtsH2 [Prochlorococcus marinus str. MIT 9515]
          Length = 619

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 200 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 230


>gi|14571708|emb|CAC42781.1| peroxin 6 [Helianthus annuus]
          Length = 908

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E  +NF S  GP
Sbjct: 661 VLLYGPPGTGKTLLAKAVATECFLNFLSVKGP 692


>gi|90962325|ref|YP_536241.1| cell division protein [Lactobacillus salivarius UCC118]
 gi|90821519|gb|ABE00158.1| Cell division protein [Lactobacillus salivarius UCC118]
          Length = 692

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108
           VL  GPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 227 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPSI 286

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 287 IFIDEI 292


>gi|46198343|ref|YP_004010.1| cell division protein ftsH [Thermus thermophilus HB27]
 gi|46195965|gb|AAS80383.1| cell division protein ftsH [Thermus thermophilus HB27]
          Length = 618

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 26/53 (49%), Positives = 30/53 (56%), Gaps = 3/53 (5%)

Query: 34  VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTS 86
           V+   N K ++E     AE    VL VGPPG GKT LA+ VA E GV F S S
Sbjct: 181 VDFLKNPKKYLEIG---AEIPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSVS 230


>gi|11500001|ref|NP_071247.1| methanol dehydrogenase regulatory protein (moxR) [Archaeoglobus
           fulgidus DSM 4304]
 gi|2650675|gb|AAB91247.1| methanol dehydrogenase regulatory protein (moxR) [Archaeoglobus
           fulgidus DSM 4304]
          Length = 324

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 92/223 (41%), Gaps = 32/223 (14%)

Query: 41  KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALL 100
           K  +E   A A    ++LF   PGLGKT LA+V AR +G ++R           D+  + 
Sbjct: 28  KNLVEKMLAAALTNGNILFEDYPGLGKTLLAKVFARVIGADYRRVQFTPDLLPSDIIGVK 87

Query: 101 TNLEDR----------DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN 150
               DR          +VL  DEI+R     +  L  AME+ Q+ +         +  ++
Sbjct: 88  IWRGDRFEFVKGPIFTNVLLADEINRSPPKTQAALLEAMEEKQITV------EGETFSLS 141

Query: 151 LSRFTLIAATTRVGLLTNPL----QDRFGIPIRLNFYE-IEDLKTIVQRGAKLTGLAVTD 205
           +  F L          T PL     DRF + +R  + E IE+   I++R         T+
Sbjct: 142 MPFFVLATQNPIEQEGTYPLPEAQMDRFMLRMRPGYPESIEEEMEILRRRISWRKDDPTE 201

Query: 206 EAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA-KTITREIAD 247
           +            P ++    RR++D  E  +  K+I + I++
Sbjct: 202 DVE----------PVVSLETFRRIQDAVEAVYVDKSILKYISE 234


>gi|15897129|ref|NP_341734.1| AAA ATPase family protein [Sulfolobus solfataricus P2]
 gi|284174370|ref|ZP_06388339.1| AAA ATPase family protein [Sulfolobus solfataricus 98/2]
 gi|13813310|gb|AAK40524.1| AAA family ATPase [Sulfolobus solfataricus P2]
 gi|261601791|gb|ACX91394.1| AAA family ATPase, CDC48 subfamily [Sulfolobus solfataricus 98/2]
          Length = 769

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT LA+ VA E G NF +  GP I
Sbjct: 502 ILLFGPPGTGKTMLAKAVATESGANFIAVRGPEI 535



 Score = 39.7 bits (91), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 8/77 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL-EDRD-----V 108
           +L  GPPG+GKT LA+ +A E    F S +GP I     G+    L  + ED       +
Sbjct: 229 ILLYGPPGVGKTLLAKAIANETDAYFTSINGPEIMSKFYGESEQRLREIFEDAKKHAPAI 288

Query: 109 LFIDEIHRLSIIVEEIL 125
           +F+DEI  ++   +E++
Sbjct: 289 IFVDEIDAIAPKRDEVI 305


>gi|324511079|gb|ADY44624.1| Katanin p60 ATPase-containing subunit [Ascaris suum]
          Length = 371

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 9/73 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFR--STSGPVIAKAGDLAALLTNLED-------RD 107
           VL  GPPG GKT L++ +ARE+   F   S+S  +   +G    L+  L D         
Sbjct: 132 VLLYGPPGTGKTQLSRSIAREINSRFYQVSSSDLISTWSGQSEKLIRELFDDALSFAGTS 191

Query: 108 VLFIDEIHRLSII 120
           V+F+DEI  L  I
Sbjct: 192 VVFVDEIDSLCRI 204


>gi|325142574|gb|EGC64970.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           meningitidis 961-5945]
          Length = 341

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +AR+L V F       + +AG    D+  ++T L        
Sbjct: 114 NILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDV 173

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 174 EKAQRGIVYIDEIDKIS 190


>gi|330841424|ref|XP_003292698.1| hypothetical protein DICPUDRAFT_157442 [Dictyostelium purpureum]
 gi|325077042|gb|EGC30782.1| hypothetical protein DICPUDRAFT_157442 [Dictyostelium purpureum]
          Length = 1147

 Score = 41.6 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 17/32 (53%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT LA+ +A E  +NF S  GP
Sbjct: 902 ILLYGPPGTGKTLLAKAIATECSLNFLSVKGP 933


>gi|302306576|ref|NP_982982.2| ABR036Wp [Ashbya gossypii ATCC 10895]
 gi|299788582|gb|AAS50806.2| ABR036Wp [Ashbya gossypii ATCC 10895]
          Length = 360

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 34/71 (47%), Gaps = 8/71 (11%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--------AKAGDLAALLTNL 103
           EA   VL  GPPG GKT +A+ +ARE G NF S     I         K  D    L N 
Sbjct: 123 EAPTGVLLYGPPGCGKTMIAKALARESGANFLSIRMSSIMDKWYGESNKIVDALFSLANK 182

Query: 104 EDRDVLFIDEI 114
               ++FIDEI
Sbjct: 183 IQPCIIFIDEI 193


>gi|227891605|ref|ZP_04009410.1| cell division protein FtsH, ATP-dependent zinc metallopeptidase
           [Lactobacillus salivarius ATCC 11741]
 gi|301300311|ref|ZP_07206518.1| ATP-dependent metallopeptidase HflB [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|227866752|gb|EEJ74173.1| cell division protein FtsH, ATP-dependent zinc metallopeptidase
           [Lactobacillus salivarius ATCC 11741]
 gi|300214976|gb|ADJ79392.1| Cell division protein [Lactobacillus salivarius CECT 5713]
 gi|300852084|gb|EFK79761.1| ATP-dependent metallopeptidase HflB [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 692

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108
           VL  GPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 227 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPSI 286

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 287 IFIDEI 292


>gi|257053680|ref|YP_003131513.1| AAA family ATPase, CDC48 subfamily [Halorhabdus utahensis DSM
           12940]
 gi|256692443|gb|ACV12780.1| AAA family ATPase, CDC48 subfamily [Halorhabdus utahensis DSM
           12940]
          Length = 742

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 8/76 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNL------EDRDV 108
           VL  GPPG GKT LA+ VA E   +F S +GP +I+K  G+    L  +      E   +
Sbjct: 226 VLLHGPPGTGKTLLAKAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDATEESPSI 285

Query: 109 LFIDEIHRLSIIVEEI 124
           +FIDE+  ++   E++
Sbjct: 286 IFIDELDSIAPKREDV 301



 Score = 40.0 bits (92), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT +A+ VA E   NF S  GP
Sbjct: 499 VLLYGPPGTGKTLMAKAVANETDANFISVRGP 530


>gi|169825698|ref|YP_001695856.1| cell division protease ftsH-like protein [Lysinibacillus sphaericus
           C3-41]
 gi|168990186|gb|ACA37726.1| Cell division protease ftsH-like protein [Lysinibacillus sphaericus
           C3-41]
          Length = 658

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           +L VGPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 185 ILLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 244

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 245 IFIDEI 250


>gi|76802176|ref|YP_327184.1| AAA-type ATPase (transitional ATPase homolog) [Natronomonas
           pharaonis DSM 2160]
 gi|76558041|emb|CAI49627.1| AAA-type ATPase (transitional ATPase homolog) [Natronomonas
           pharaonis DSM 2160]
          Length = 740

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 8/76 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNL------EDRDV 108
           VL  GPPG GKT LA+ VA E   +F S +GP +I+K  G+    L  +      E   +
Sbjct: 226 VLLHGPPGTGKTLLAKAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDATEESPSI 285

Query: 109 LFIDEIHRLSIIVEEI 124
           +FIDE+  ++   E++
Sbjct: 286 IFIDELDSIAPKREDV 301



 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT +A+ VA E   NF S  GP
Sbjct: 499 VLLYGPPGTGKTLMAKAVANETNANFISVRGP 530


>gi|46390947|dbj|BAD16461.1| transitional endoplasmic reticulum ATPase-like [Oryza sativa
           Japonica Group]
          Length = 473

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK-----AGDLAALLTNLEDR---DV 108
           VL  GPPG GKT LA+ +A E G NF S +G  +       A  L   L +   R    +
Sbjct: 220 VLLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASRLAPVI 279

Query: 109 LFIDEIHRL 117
           +F+DE+  L
Sbjct: 280 IFVDEVDSL 288


>gi|118581289|ref|YP_902539.1| ATP-dependent metalloprotease FtsH [Pelobacter propionicus DSM
           2379]
 gi|310946754|sp|A1AT11|FTSH_PELPD RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|118503999|gb|ABL00482.1| ATP-dependent metalloprotease FtsH [Pelobacter propionicus DSM
           2379]
          Length = 623

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108
           VL VGPPG GKT LA+ VA E GV F S S        V   A  +  L TN +     +
Sbjct: 210 VLLVGPPGTGKTLLARAVAGEAGVAFFSISASQFIEMFVGVGASRVRDLFTNAKKAAPSI 269

Query: 109 LFIDEI 114
           +FIDE+
Sbjct: 270 VFIDEL 275


>gi|289628151|ref|ZP_06461105.1| ATP-dependent protease La [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|330871234|gb|EGH05943.1| ATP-dependent protease La [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 805

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 87/215 (40%), Gaps = 53/215 (24%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAKAGDLAALLT 101
           VL VGPPG+GKT++ + +A  LG  F   S                 + A+ G L   L 
Sbjct: 387 VLLVGPPGVGKTSVGRSIAESLGRPFYRLSVGGMRDEAEIKGHRRTYIGAQPGKLVQALK 446

Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAME----DFQLDLMVGEGPSARSVK 148
           ++E  + V+ +DEI ++    +        E L P       D  LDL           +
Sbjct: 447 DVEVMNPVIMLDEIDKMGQSYQGDPASALLETLDPEQNVEFLDHYLDL-----------R 495

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR----------GAKL 198
           ++LS+   +     +  +  PL DR  + IRL+ Y  E+   I +R          G   
Sbjct: 496 LDLSKVLFVCTANTLDSIPGPLLDRMDV-IRLSGYITEEKLAIAKRHLWPKQLEKAGVAK 554

Query: 199 TGLAVTDE---AACEIAMRSRGTPRIAGRLLRRVR 230
           + L+++D    A  E   R  G   +  +L + VR
Sbjct: 555 SKLSISDSALRAVIEGYAREAGVRHLEKQLGKLVR 589


>gi|254492062|ref|ZP_05105238.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylophaga
           thiooxidans DMS010]
 gi|224462726|gb|EEF78999.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylophaga
           thiooxydans DMS010]
          Length = 423

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 61/138 (44%), Gaps = 29/138 (21%)

Query: 10  RNVSQEDADISLLRPRTLEE-----FTGQVEACSNLKVFIEAAKARAEA----------L 54
           + +S ++AD  L  PR + E       GQ +A   L V +     R  +           
Sbjct: 52  QELSADEADSKLPTPREINEALDNYVIGQEKAKRYLSVAVYNHYKRLRSGHKDDGVELSK 111

Query: 55  DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRD 107
            ++L +GP G GKT LA+ +AR+L V F       + +AG +   + N+        D D
Sbjct: 112 SNILLIGPTGSGKTLLAETLARQLNVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYD 171

Query: 108 V-------LFIDEIHRLS 118
           V       ++IDEI ++S
Sbjct: 172 VDKAETGIVYIDEIDKIS 189


>gi|254422833|ref|ZP_05036551.1| ATP-dependent metallopeptidase HflB subfamily [Synechococcus sp.
           PCC 7335]
 gi|196190322|gb|EDX85286.1| ATP-dependent metallopeptidase HflB subfamily [Synechococcus sp.
           PCC 7335]
          Length = 626

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 198 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 228


>gi|170076675|ref|YP_001733313.1| ATP-dependent metalloprotease FtsH [Synechococcus sp. PCC 7002]
 gi|169884344|gb|ACA98057.1| ATP-dependent metalloprotease FtsH subfamily [Synechococcus sp. PCC
           7002]
          Length = 620

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 197 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 227


>gi|148508161|gb|ABQ75952.1| AAA-type ATPase [uncultured haloarchaeon]
          Length = 752

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 8/76 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNL------EDRDV 108
           VL  GPPG GKT LA+ VA E   +F S +GP +I+K  G+    L  +      E   +
Sbjct: 236 VLLHGPPGTGKTLLAKAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDATEESPSI 295

Query: 109 LFIDEIHRLSIIVEEI 124
           +FIDE+  ++   E++
Sbjct: 296 IFIDELDSIAPKREDV 311



 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 19/37 (51%), Positives = 22/37 (59%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +A   VL  GPPG GKT +A+ VA E   NF S  GP
Sbjct: 504 DAPKGVLLYGPPGTGKTLIAKAVANETNANFISVRGP 540


>gi|55980372|ref|YP_143669.1| cell division protein FtsH [Thermus thermophilus HB8]
 gi|55771785|dbj|BAD70226.1| cell division protein FtsH [Thermus thermophilus HB8]
          Length = 618

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 26/53 (49%), Positives = 30/53 (56%), Gaps = 3/53 (5%)

Query: 34  VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTS 86
           V+   N K ++E     AE    VL VGPPG GKT LA+ VA E GV F S S
Sbjct: 181 VDFLKNPKKYLEIG---AEIPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSVS 230


>gi|67902154|ref|XP_681333.1| hypothetical protein AN8064.2 [Aspergillus nidulans FGSC A4]
 gi|40740496|gb|EAA59686.1| hypothetical protein AN8064.2 [Aspergillus nidulans FGSC A4]
 gi|259480821|tpe|CBF73811.1| TPA: subunit of heteropentameric Replication factor (Eurofung)
           [Aspergillus nidulans FGSC A4]
          Length = 398

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 5/56 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           RP TL++ +G  +  + +  F+EA +     L H+L  GPPG GKT+    +AR +
Sbjct: 52  RPNTLDDVSGHKDILATINRFVEANQ-----LPHLLLYGPPGTGKTSTILALARRI 102


>gi|309808245|ref|ZP_07702154.1| putative DNA polymerase III, subunit gamma and tau [Lactobacillus
           iners LactinV 01V1-a]
 gi|308168533|gb|EFO70642.1| putative DNA polymerase III, subunit gamma and tau [Lactobacillus
           iners LactinV 01V1-a]
          Length = 173

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 54/123 (43%), Gaps = 9/123 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGV 80
            RPRT E   GQ   C  L+  I+  K     + H  LF GP G GKT+ A++ A+ +  
Sbjct: 10  WRPRTFEAVVGQSAICDTLRNSIKRHK-----ISHAFLFSGPRGTGKTSCAKIFAKAINC 64

Query: 81  NFRSTSGPVIAKAGDLAA---LLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
                  P    +  LAA   +L ++ + D    + +  +  I +++ Y   + +    +
Sbjct: 65  MDSKDGEPCNQCSNCLAADKGILNDIIEIDAASNNGVDEIRAIRDKVKYAPTQGYYKVYI 124

Query: 138 VGE 140
           + E
Sbjct: 125 IDE 127


>gi|320106404|ref|YP_004181994.1| ATP-dependent protease La [Terriglobus saanensis SP1PR4]
 gi|319924925|gb|ADV82000.1| ATP-dependent protease La [Terriglobus saanensis SP1PR4]
          Length = 818

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 78/192 (40%), Gaps = 39/192 (20%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAKAGDLAALLT 101
           + FVGPPG+GKT+L + +AR LG  F   S                 + A  G +   L 
Sbjct: 369 LCFVGPPGVGKTSLGKSIARALGRKFSRISLGGMHDEAEIRGHRRTYIGAMPGQIIQNLK 428

Query: 102 NLEDRDVLF-IDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152
            +E  D +F +DEI +L        +  + E L PA      D  + +         +LS
Sbjct: 429 RVETNDPVFMLDEIDKLGRDFRGDPASALLETLDPAQNGTFRDHYLDQ-------PFDLS 481

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL-----KTIVQRGAKLTGLAVTD-- 205
           +   I    ++  +  PL DR  I I L  Y  E+      K +V R  K  G+   +  
Sbjct: 482 KVLFICTANQLDPIPAPLLDRMEI-IELTGYTEEEKVSIAEKYLVPRQVKENGIEAVEGG 540

Query: 206 EAACEIAMRSRG 217
           EA  E +  + G
Sbjct: 541 EAKIEFSREALG 552


>gi|299750239|ref|XP_001836624.2| ribosome biogenesis ATPase RIX7 [Coprinopsis cinerea okayama7#130]
 gi|298408810|gb|EAU85195.2| ribosome biogenesis ATPase RIX7 [Coprinopsis cinerea okayama7#130]
          Length = 799

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL--EDRDV---- 108
           VL  GPPG GKT LA  +A ELGV F + S P I    +G+    L +   E + V    
Sbjct: 195 VLLHGPPGCGKTLLANAIAGELGVPFINISAPSIVSGMSGESEKTLRDTFEEAKRVAPCL 254

Query: 109 LFIDEIHRLS 118
           LFIDEI  ++
Sbjct: 255 LFIDEIDAIT 264



 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 21/37 (56%), Positives = 22/37 (59%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           EA   VL  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 522 EAPCGVLMWGPPGCGKTLLAKAVANESRANFISVKGP 558


>gi|295133941|ref|YP_003584617.1| ATPase [Zunongwangia profunda SM-A87]
 gi|294981956|gb|ADF52421.1| ATPase [Zunongwangia profunda SM-A87]
          Length = 1649

 Score = 41.6 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 25/42 (59%)

Query: 50   RAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA 91
            R + +  +L + PPG GKTTL + +A  LG+ F   +GP I 
Sbjct: 1281 RTDRMGMLLLISPPGYGKTTLMEYIANRLGLVFMKINGPAIG 1322


>gi|291280407|ref|YP_003497242.1| ATPase AAA family [Deferribacter desulfuricans SSM1]
 gi|290755109|dbj|BAI81486.1| ATPase, AAA family [Deferribacter desulfuricans SSM1]
          Length = 310

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 70/157 (44%), Gaps = 22/157 (14%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAAL-LTNLED--------- 105
           H+L    PGLGKTTLA  +A+ +GV F            D+  L + N E          
Sbjct: 38  HILIEDSPGLGKTTLAIAIAKSMGVTFSRIQCTNDLLPTDITGLNIFNKETGEFEFKPGP 97

Query: 106 --RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
              ++L +DEI+R +   +  L  AM + Q+ +   EG   ++ K++   F +    +  
Sbjct: 98  IFNNILLVDEINRATPKTQSALLEAMGEKQVTI---EG---KTFKLSQPYFVIATQNSVE 151

Query: 164 GLLTNPLQ----DRFGIPIRLNFYEIEDLKTIVQRGA 196
              T PL     DRF + I L +   E+   I++ G+
Sbjct: 152 SYGTFPLPESQLDRFIMKINLGYPTKEEELEILKGGS 188


>gi|218888168|ref|YP_002437489.1| ATP-dependent protease La [Desulfovibrio vulgaris str. 'Miyazaki
           F']
 gi|218759122|gb|ACL10021.1| ATP-dependent protease La [Desulfovibrio vulgaris str. 'Miyazaki
           F']
          Length = 898

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 71/166 (42%), Gaps = 40/166 (24%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAKAGDLAALLT 101
           + F GPPG+GKT+L + +AR +G  F+  S                 + A  G +   L 
Sbjct: 475 LCFAGPPGVGKTSLGRSIARAMGRKFQRISLGGMRDEAEIRGHRRTYIGAMPGRIVQSLK 534

Query: 102 NLEDRD-VLFIDEIHRL--------SIIVEEILYP----AMEDFQLDLMVGEGPSARSVK 148
            L  R+ VL +DEI ++        S  + E+L P    +  D  L+           V 
Sbjct: 535 QLGTRNPVLMLDEIDKIGSDFRGDPSSALLEVLDPEQNFSFSDHYLN-----------VP 583

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
            +LS+   I    ++  +  PL+DR  + I +  Y +++   I +R
Sbjct: 584 FDLSKVMFICTANQLDTIPPPLRDRMEV-ISIPGYTMQEKLAIARR 628


>gi|203284683|ref|YP_002222423.1| cell division protein [Borrelia duttonii Ly]
 gi|203288216|ref|YP_002223231.1| cell division protein [Borrelia recurrentis A1]
 gi|201084126|gb|ACH93717.1| cell division protein [Borrelia duttonii Ly]
 gi|201085436|gb|ACH95010.1| cell division protein [Borrelia recurrentis A1]
          Length = 636

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 35/69 (50%), Gaps = 7/69 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAK--ARAEAL-----DHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ EA   L   +E  K   + E +       VL VG PG GKT LA+ VA E 
Sbjct: 171 TFKDVAGQEEAKQELGEVVEFLKYPKKFEKIGARIPKGVLLVGSPGTGKTLLAKAVAGEA 230

Query: 79  GVNFRSTSG 87
           GVNF   SG
Sbjct: 231 GVNFFHMSG 239


>gi|220910286|ref|YP_002485597.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7425]
 gi|219866897|gb|ACL47236.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7425]
          Length = 623

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 204 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 234


>gi|123967784|ref|YP_001008642.1| cell division protein FtsH2 [Prochlorococcus marinus str. AS9601]
 gi|123197894|gb|ABM69535.1| cell division protein FtsH2 [Prochlorococcus marinus str. AS9601]
          Length = 617

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 198 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 228


>gi|56751224|ref|YP_171925.1| ATP-dependent Zn protease [Synechococcus elongatus PCC 6301]
 gi|81299108|ref|YP_399316.1| FtsH peptidase [Synechococcus elongatus PCC 7942]
 gi|56686183|dbj|BAD79405.1| ATP-dependent Zn protease [Synechococcus elongatus PCC 6301]
 gi|81167989|gb|ABB56329.1| FtsH peptidase homologue, chloroplast. Metallo peptidase. MEROPS
           family M41 [Synechococcus elongatus PCC 7942]
          Length = 613

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 194 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 224


>gi|268576128|ref|XP_002643044.1| Hypothetical protein CBG22959 [Caenorhabditis briggsae]
          Length = 353

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP  L E     +    L  FIE        L H+LF GPPG GKTT     AR++
Sbjct: 18 RPSKLNELVAHEQVVKTLTKFIEN-----RTLPHLLFYGPPGTGKTTTVLAAARKM 68


>gi|333029343|ref|ZP_08457404.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacteroides
           coprosuis DSM 18011]
 gi|332739940|gb|EGJ70422.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacteroides
           coprosuis DSM 18011]
          Length = 413

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           +++ VG  G GKT LA+ +A++L V F      V+ +AG    D+ ++LT L        
Sbjct: 115 NIIMVGSTGTGKTLLARTIAKQLNVPFTIVDATVLTEAGYVGEDIESILTRLLQVADYDV 174

Query: 104 --EDRDVLFIDEIHRLS 118
              ++ ++FIDEI +++
Sbjct: 175 EKAEKGIVFIDEIDKIA 191


>gi|323699100|ref|ZP_08111012.1| ATP-dependent protease La [Desulfovibrio sp. ND132]
 gi|323459032|gb|EGB14897.1| ATP-dependent protease La [Desulfovibrio desulfuricans ND132]
          Length = 838

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 68/162 (41%), Gaps = 33/162 (20%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAKAGDLAALLT 101
           + FVGPPG+GKT+L + +AR LG  F   S                 + A  G +   + 
Sbjct: 417 LCFVGPPGVGKTSLGRSIARSLGRKFHRMSLGGMRDEAEIRGHRRTYIGAMPGRIIQAIK 476

Query: 102 NLEDRD-VLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152
               R+ V+ +DEI +L        S  + E+L P       D  +       +V  +LS
Sbjct: 477 QCGTRNPVIMLDEIDKLGSDFRGDPSSALLEVLDPEQNFSFTDHYL-------NVPFDLS 529

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           +   +     +  +  PL DR  + IR+  Y  E  KT++ R
Sbjct: 530 KVMFVCTANMLDSIPGPLMDRMEV-IRIPGY-TEQEKTVITR 569


>gi|295397832|ref|ZP_06807896.1| cell division protein FtsH [Aerococcus viridans ATCC 11563]
 gi|294973929|gb|EFG49692.1| cell division protein FtsH [Aerococcus viridans ATCC 11563]
          Length = 721

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108
           VL  GPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 236 VLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSEFVEMFVGVGASRVRDLFENAKKSAPSI 295

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 296 IFIDEI 301


>gi|225678278|gb|EEH16562.1| cdcH [Paracoccidioides brasiliensis Pb03]
          Length = 801

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 35/72 (48%), Gaps = 3/72 (4%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           ADI  L     E  T  VE   N +++   A+    A   VL  GPPG GKT LA+ VA 
Sbjct: 538 ADIGALGGVRDELSTAIVEPIRNPEIY---ARVGITAPTGVLLWGPPGCGKTLLAKAVAN 594

Query: 77  ELGVNFRSTSGP 88
           E   NF S  GP
Sbjct: 595 ESRANFISVKGP 606



 Score = 40.0 bits (92), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDL-AALLTNLEDRD-----V 108
           VL  GPPG GKT +A   A ELGV F + S P I    +G+   AL  + E+       +
Sbjct: 265 VLLHGPPGCGKTMIANAFAAELGVPFIAISAPSIVSGMSGESEKALREHFEEAKKVAPCL 324

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 325 IFIDEIDAIT 334


>gi|145640255|ref|ZP_01795839.1| Holliday junction DNA helicase B [Haemophilus influenzae R3021]
 gi|145274841|gb|EDK14703.1| Holliday junction DNA helicase B [Haemophilus influenzae 22.4-21]
          Length = 80

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 29/49 (59%)

Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
          +RP+ L ++ GQ +    + +FI+AAK R +ALDH+L +      K  L
Sbjct: 23 IRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLILALQVWEKQRL 71


>gi|90419400|ref|ZP_01227310.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90336337|gb|EAS50078.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 422

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+         
Sbjct: 110 AKSNILLIGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSAD 169

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDEI ++S
Sbjct: 170 YNVERAQRGIVYIDEIDKIS 189


>gi|308487512|ref|XP_003105951.1| CRE-RFC-4 protein [Caenorhabditis remanei]
 gi|308254525|gb|EFO98477.1| CRE-RFC-4 protein [Caenorhabditis remanei]
          Length = 362

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+TL++   Q E  + LK        + + L H+LF GPPG GKT+ A    R+L
Sbjct: 22 RPKTLDDIAHQDEVVTMLK-----GALQGKDLPHLLFYGPPGTGKTSTALAFCRQL 72


>gi|225019293|ref|ZP_03708485.1| hypothetical protein CLOSTMETH_03246 [Clostridium methylpentosum
           DSM 5476]
 gi|224947924|gb|EEG29133.1| hypothetical protein CLOSTMETH_03246 [Clostridium methylpentosum
           DSM 5476]
          Length = 453

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 122/289 (42%), Gaps = 67/289 (23%)

Query: 9   SRNVSQEDADISL-----LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFV 60
           SR  ++E   IS+      RP+T+++  GQ   +     L+  I + +     L +++F 
Sbjct: 20  SRFTNREKGVISMPLADRARPKTIDDVVGQKHLIGPGRPLRNIILSGE-----LPNMIFY 74

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-----EDRDVLFIDEIH 115
           GP G GKTT+A+++A   G      +G   A   D+  ++  L     ++  VL++DEI 
Sbjct: 75  GPSGTGKTTVARMIAENAGKRLHKLNG-TNASLADIKQVVGELDTIMGQNGIVLYLDEIQ 133

Query: 116 RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRF- 174
            L+   ++ L   +E                      R TLIA+TT      NP    + 
Sbjct: 134 YLNKKQQQSLLEYIES--------------------GRITLIASTTE-----NPYFYIYN 168

Query: 175 GIPIRLNFYEI-----EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA---GRLL 226
            I  R   +E      ++ +  V+RG +L    V +E   E+ +    T  IA   G  +
Sbjct: 169 AILSRATVFEFKSVPPQEAEAAVERGFRL----VAEEQKLELTLEEGVTAHIARGCGGDV 224

Query: 227 RRVRDFAEVA--------HAKTITREIADAALLRLAI--DKMGFDQLDL 265
           R+  +  E+           KT++ E+A     + A+  D+ G +  DL
Sbjct: 225 RKALNTVELCVLAAELRDGKKTVSLELAKELTQKSAMRYDRAGDEHYDL 273


>gi|218187083|gb|EEC69510.1| hypothetical protein OsI_38748 [Oryza sativa Indica Group]
          Length = 1295

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 89/196 (45%), Gaps = 20/196 (10%)

Query: 40  LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAAL 99
           +K+  E   A ++ L  +  VGP GLGKTTLA  V R+L   F+  +   +++  D+  +
Sbjct: 571 IKLLTEGEGASSQKLKVISIVGPGGLGKTTLANEVFRKLESQFQCRAFVSLSQQPDVKKI 630

Query: 100 LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD----LMVGEGPSARSVK-INLSRF 154
           + N+  +  +   E   + I  EE L  A  +F  +    +++ +  S ++ K I  + F
Sbjct: 631 VRNIYCQ--VSQQEYGNIDIWDEEKLINATREFLTNKRYFVVIDDIWSTQAWKTIRCALF 688

Query: 155 -----TLIAATTR----VGLLTNPLQDR-FGI-PIRLNFYEIEDLKTIVQRGAKLTGLAV 203
                + I  TTR          P  DR F I P+ ++  +   LK I   G+K   +  
Sbjct: 689 VNNCGSRIMTTTRNMAIAKSCCTPDHDRVFEIMPLSIDNSKSLFLKRIF--GSKDVCIPQ 746

Query: 204 TDEAACEIAMRSRGTP 219
            DE   EI  +  G+P
Sbjct: 747 LDEVCYEILKKCGGSP 762


>gi|70950279|ref|XP_744476.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56524446|emb|CAH74286.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
          Length = 725

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 15/88 (17%)

Query: 41  KVFIEAAKARAEALDH-----VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI----- 90
           K+FI    +  + +DH     +LF G  G GKT LA+ +A+EL  +F   SG        
Sbjct: 275 KLFINM-NSDNDYIDHPCSSSLLFTGETGTGKTLLAKAIAKELNADFIHVSGSSFIELYI 333

Query: 91  ----AKAGDLAALLTNLEDRDVLFIDEI 114
               +K  +L     N ++  V+FIDEI
Sbjct: 334 GNGASKVRNLFKAAKNNKNPVVVFIDEI 361


>gi|148260430|ref|YP_001234557.1| ATP-dependent metalloprotease FtsH [Acidiphilium cryptum JF-5]
 gi|326403623|ref|YP_004283705.1| ATP-dependent protease FtsH [Acidiphilium multivorum AIU301]
 gi|146402111|gb|ABQ30638.1| membrane protease FtsH catalytic subunit [Acidiphilium cryptum
           JF-5]
 gi|325050485|dbj|BAJ80823.1| ATP-dependent protease FtsH [Acidiphilium multivorum AIU301]
          Length = 633

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           +L VGPPG GKT LA+ VA E GV F S SG
Sbjct: 195 ILLVGPPGTGKTLLARAVAGEAGVTFFSISG 225


>gi|323136624|ref|ZP_08071705.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylocystis
           sp. ATCC 49242]
 gi|322397941|gb|EFY00462.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylocystis
           sp. ATCC 49242]
          Length = 422

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L +GP G+GKT LAQ +AR L V F       + +AG +   + N+         
Sbjct: 110 AKSNILLIGPTGVGKTMLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASD 169

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R ++++DEI ++S
Sbjct: 170 YNVERAQRGIVYVDEIDKIS 189


>gi|300867979|ref|ZP_07112618.1| FtsH peptidase [Oscillatoria sp. PCC 6506]
 gi|300334000|emb|CBN57796.1| FtsH peptidase [Oscillatoria sp. PCC 6506]
          Length = 612

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 193 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 223


>gi|269926167|ref|YP_003322790.1| ATP-dependent metalloprotease FtsH [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269789827|gb|ACZ41968.1| ATP-dependent metalloprotease FtsH [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 643

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL VGPPG GKT L++ VA E GV F S SG    +   G  A+ + +L D+       +
Sbjct: 197 VLLVGPPGTGKTLLSRAVAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFDQAKRNAPCI 256

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 257 VFIDEI 262


>gi|224418720|ref|ZP_03656726.1| zinc metallopeptidase [Helicobacter canadensis MIT 98-5491]
 gi|253826750|ref|ZP_04869635.1| Cell division protein FtsH [Helicobacter canadensis MIT 98-5491]
 gi|313142239|ref|ZP_07804432.1| zinc metallopeptidase [Helicobacter canadensis MIT 98-5491]
 gi|253510156|gb|EES88815.1| Cell division protein FtsH [Helicobacter canadensis MIT 98-5491]
 gi|313131270|gb|EFR48887.1| zinc metallopeptidase [Helicobacter canadensis MIT 98-5491]
          Length = 643

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNL--EDRDV 108
           VL VGPPG GKT LA+ VA E  V F S SG       V   A  +  L  N   E   +
Sbjct: 217 VLLVGPPGTGKTLLAKAVAGEANVPFFSVSGSSFIEMFVGVGASRVRDLFENAKKEAPSI 276

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 277 IFIDEI 282


>gi|182411953|ref|YP_001817019.1| ATP-dependent metalloprotease FtsH [Opitutus terrae PB90-1]
 gi|310946751|sp|B1ZMG6|FTSH_OPITP RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|177839167|gb|ACB73419.1| ATP-dependent metalloprotease FtsH [Opitutus terrae PB90-1]
          Length = 614

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108
           VL VGPPG GKT LA+ VA E   NF S SG       V   A  + +L     +    +
Sbjct: 210 VLLVGPPGTGKTMLAKAVAGEARANFYSLSGSDFVELYVGVGASRVRSLFKKARETAPSI 269

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 270 IFIDEI 275


>gi|157412585|ref|YP_001483451.1| cell division protein FtsH2 [Prochlorococcus marinus str. MIT 9215]
 gi|157387160|gb|ABV49865.1| cell division protein FtsH2 [Prochlorococcus marinus str. MIT 9215]
          Length = 617

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 198 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 228


>gi|114799276|ref|YP_760783.1| ATP-dependent protease ATP-binding subunit ClpX [Hyphomonas
           neptunium ATCC 15444]
 gi|123128702|sp|Q0C0G0|CLPX_HYPNA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|114739450|gb|ABI77575.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Hyphomonas
           neptunium ATCC 15444]
          Length = 420

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L VGP G GKT LAQ +AR L V F       + +AG +   + N+            
Sbjct: 114 NILLVGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIVLKLLQSADYNV 173

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 174 ERAQRGIVYIDEIDKIS 190


>gi|148657290|ref|YP_001277495.1| ATPase [Roseiflexus sp. RS-1]
 gi|148569400|gb|ABQ91545.1| ATPase associated with various cellular activities, AAA_3
           [Roseiflexus sp. RS-1]
          Length = 318

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 61/136 (44%), Gaps = 17/136 (12%)

Query: 14  QEDADISLLRPRTLEEFTGQVE-ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           ++ AD++LL  R +E    QVE      +  +E   A   A  HVL    PGL KT +A+
Sbjct: 3   EQYADVALLGQRVIE----QVERVIVGKRAVLEQIMAATLAGGHVLLEDYPGLAKTLIAR 58

Query: 73  VVARELGVNFRS------------TSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
             A  LG+ FR             T G V  +A D   L       +++  DEI+R S  
Sbjct: 59  SFAAALGLEFRRIQFTPDLLPGDITGGYVYNRAADRFELRRGPVFANIVLADEINRASPK 118

Query: 121 VEEILYPAMEDFQLDL 136
            +  L  AM++ Q+ L
Sbjct: 119 TQSALLEAMQERQVTL 134


>gi|50549031|ref|XP_501986.1| YALI0C18689p [Yarrowia lipolytica]
 gi|51704274|sp|P36966|PEX6_YARLI RecName: Full=Peroxisomal biogenesis factor 6; AltName:
           Full=Peroxin-6; AltName: Full=Peroxisome biosynthesis
           protein PAY4
 gi|49647853|emb|CAG82306.1| YALI0C18689p [Yarrowia lipolytica]
          Length = 1024

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 17/32 (53%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +LF GPPG GKT LA+ +A    +NF S  GP
Sbjct: 755 ILFYGPPGTGKTLLAKAIATTFSLNFFSVKGP 786


>gi|186682396|ref|YP_001865592.1| ATP-dependent metalloprotease FtsH [Nostoc punctiforme PCC 73102]
 gi|186464848|gb|ACC80649.1| ATP-dependent metalloprotease FtsH [Nostoc punctiforme PCC 73102]
          Length = 621

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 205 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 235


>gi|328872757|gb|EGG21124.1| AAA ATPase domain-containing protein [Dictyostelium fasciculatum]
          Length = 443

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTS-GPVIAKA-GDLAALLTNL------EDRDV 108
           +L  GPPG GK+ LA+ VA E+   F S S   ++ K  GD   L+  L      +   V
Sbjct: 170 ILLYGPPGTGKSYLAKAVATEISSTFFSISPSDIVTKWLGDSEKLVKQLFEMAREKKNSV 229

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 230 IFIDEIDSL 238


>gi|298706855|emb|CBJ25819.1| AAA ATPase domain-containing protein [Ectocarpus siliculosus]
          Length = 1182

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 28/48 (58%), Gaps = 4/48 (8%)

Query: 41  KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +VF +  K RA     +L  GPPG GKT LA+ VA E G+ F S  GP
Sbjct: 828 EVFGKGVKRRA----GILLYGPPGTGKTLLAKAVATECGLPFFSVKGP 871


>gi|296160892|ref|ZP_06843704.1| ATP-dependent metalloprotease FtsH [Burkholderia sp. Ch1-1]
 gi|295888781|gb|EFG68587.1| ATP-dependent metalloprotease FtsH [Burkholderia sp. Ch1-1]
          Length = 495

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 79/271 (29%), Positives = 117/271 (43%), Gaps = 45/271 (16%)

Query: 26  TLEEFTGQVEACSNLKVFIE----AAKAR---AEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  EA + LK  +E    A + R    +    VL VG PG GKT LA+ VA E 
Sbjct: 8   TFDDIAGIDEAKAELKQIVEFLRNAERYRRLGGKIPKGVLIVGAPGTGKTLLAKAVAGEA 67

Query: 79  GVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG    +   G  AA + +L ++       ++FIDE+  L  +    +    +
Sbjct: 68  GVPFFSISGSAFVEMFVGVGAARVRDLFEQAQKKAPCIVFIDELDALGKVRGAGVTSGND 127

Query: 131 DFQLDL------MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPL--QDRFGIPIRLNF 182
           + +  L      M G  P+        S   ++AAT R  +L   L    RF   I ++ 
Sbjct: 128 EREQTLNQLLVEMDGFQPN--------SGVIILAATNRPEILDPALLRPGRFDRHIAIDR 179

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            ++   + I+Q   K   LA  D    EIA R   TP  AG  L  V + A + HA    
Sbjct: 180 PDLNGRRQILQVHVKKVTLA-ADVDLAEIASR---TPGFAGADLANVVNEAAL-HA---- 230

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIAR 273
                A L + A+  + FD+   R +T + R
Sbjct: 231 -----AELDKSAVGMVDFDEAIDRAMTGMER 256


>gi|296109413|ref|YP_003616362.1| 26S proteasome subunit P45 family [Methanocaldococcus infernus ME]
 gi|295434227|gb|ADG13398.1| 26S proteasome subunit P45 family [Methanocaldococcus infernus ME]
          Length = 421

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 8/89 (8%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL------EDRDV 108
           VL  GPPG GKT LA+ VARE    F    G  + K   G+ A+L+ ++      +   +
Sbjct: 200 VLLYGPPGTGKTLLAKAVARETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSI 259

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           +FIDEI  ++    E L     + Q  LM
Sbjct: 260 IFIDEIDAIAAKRTEALTGGDREVQRTLM 288


>gi|296120883|ref|YP_003628661.1| ATPase associated with various cellular activities AAA_3
           [Planctomyces limnophilus DSM 3776]
 gi|296013223|gb|ADG66462.1| ATPase associated with various cellular activities AAA_3
           [Planctomyces limnophilus DSM 3776]
          Length = 319

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 12/104 (11%)

Query: 43  FIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKAGDLAALLT 101
            IEA      A  HVL  GPPGLGKT LA  ++R L   + R    P +  +      + 
Sbjct: 27  LIEAVFVALLAEGHVLIEGPPGLGKTLLATTISRVLKCRYSRIQFTPDLMPSDVTGHSVY 86

Query: 102 NLEDR-----------DVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           NL++R           ++L  DEI+R     +  L  AM++ Q+
Sbjct: 87  NLQERRFHFSEGPVFANLLLADEINRAPAKTQASLLEAMQECQV 130


>gi|221128917|ref|XP_002157293.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 422

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 9/70 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRS-TSGPVIAKA-GDLAALLTNL-------EDRD 107
           +L  GPPG GK+ +AQ V+ E+   F S TS  +++   G+   L+  L         R 
Sbjct: 157 ILLYGPPGTGKSRMAQAVSSEIECTFYSVTSSDLLSSWFGESEKLIKELFTHARTRSTRS 216

Query: 108 VLFIDEIHRL 117
           V+FIDEI  L
Sbjct: 217 VIFIDEIDSL 226


>gi|168334136|ref|ZP_02692345.1| ATP-dependent metalloprotease FtsH [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 577

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 15/98 (15%)

Query: 32  GQVEACSNLKVFIEAAKARAEALDH-------VLFVGPPGLGKTTLAQVVARELGVNFRS 84
           G VEA   ++  ++  KA  +  D        ++F GPPG GKT +A+ +A+E  V F S
Sbjct: 152 GNVEAKEQVQDIVDFIKAPHKYADMGATMPKGLIFYGPPGTGKTMMAKALAKEANVPFFS 211

Query: 85  TSGPVIAK--AGDLAALLTNL------EDRDVLFIDEI 114
            SG    +   G  A+ +  L       ++ V+FIDEI
Sbjct: 212 VSGSDFMQMYVGVGASRIRELFREAKKSEKAVIFIDEI 249


>gi|150866810|ref|XP_001386533.2| 40 kDa putative membrane-spanning ATPase [Scheffersomyces stipitis
           CBS 6054]
 gi|149388066|gb|ABN68504.2| 40 kDa putative membrane-spanning ATPase [Scheffersomyces stipitis
           CBS 6054]
          Length = 357

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 32/66 (48%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--------AKAGDLAALLTNLEDRDV 108
           VLF GPPG GKT LA+ +A+E G  F S     I         K  D    L N     +
Sbjct: 129 VLFYGPPGCGKTMLAKAIAKESGAFFLSIRMSTIMDKWYGESNKITDAIFSLANKLQPCI 188

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 189 IFIDEI 194


>gi|148238691|ref|YP_001224078.1| cell division protein FtsH [Synechococcus sp. WH 7803]
 gi|147847230|emb|CAK22781.1| Cell division protein FtsH [Synechococcus sp. WH 7803]
          Length = 617

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 198 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 228


>gi|312865755|ref|ZP_07725977.1| ATP-dependent metallopeptidase HflB [Streptococcus downei F0415]
 gi|311098630|gb|EFQ56852.1| ATP-dependent metallopeptidase HflB [Streptococcus downei F0415]
          Length = 666

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLE--DRDV 108
           VL  GPPG GKT LA+ VA E GV F S SG       V   A  + +L  + +  +R +
Sbjct: 226 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRSLFEDAKKAERAL 285

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 286 IFIDEI 291


>gi|254432227|ref|ZP_05045930.1| ATP-dependent metalloprotease FtsH [Cyanobium sp. PCC 7001]
 gi|197626680|gb|EDY39239.1| ATP-dependent metalloprotease FtsH [Cyanobium sp. PCC 7001]
          Length = 614

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 195 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 225


>gi|254421464|ref|ZP_05035182.1| ATP-dependent metallopeptidase HflB subfamily [Synechococcus sp.
           PCC 7335]
 gi|196188953|gb|EDX83917.1| ATP-dependent metallopeptidase HflB subfamily [Synechococcus sp.
           PCC 7335]
          Length = 613

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 194 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 224


>gi|189463817|ref|ZP_03012602.1| hypothetical protein BACINT_00150 [Bacteroides intestinalis DSM
           17393]
 gi|189438767|gb|EDV07752.1| hypothetical protein BACINT_00150 [Bacteroides intestinalis DSM
           17393]
          Length = 742

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 4/74 (5%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKA----RAEALDHVLFVGPPGLGKTT 69
           ++   +  L  R   +  GQ EA   +   ++ +KA      + L  +LFVGP G+GKT 
Sbjct: 438 EDTTSLETLHARISAKIYGQEEAVRQVVEAVQMSKAGLLDENKPLASLLFVGPTGVGKTE 497

Query: 70  LAQVVARELGVNFR 83
           +A+V+A ELG++ +
Sbjct: 498 VAKVLASELGISLQ 511


>gi|162451421|ref|YP_001613788.1| endopeptidase LA [Sorangium cellulosum 'So ce 56']
 gi|302425028|sp|A9GIS9|LON3_SORC5 RecName: Full=Lon protease 3; AltName: Full=ATP-dependent protease
           La 3
 gi|161162003|emb|CAN93308.1| Endopeptidase LA [Sorangium cellulosum 'So ce 56']
          Length = 830

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 80/192 (41%), Gaps = 45/192 (23%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           + FVGPPG+GKT+LA+ +AR  G  F R + G V  +A              G L   L 
Sbjct: 363 LCFVGPPGVGKTSLAKSIARATGRKFVRLSLGGVRDEAEIRGHRRTYIGALPGKLIQSLK 422

Query: 102 NL-EDRDVLFIDEIHRLSI--------IVEEILYP----AMEDFQLDLMVGEGPSARSVK 148
            +  +  V  +DE+ ++S          + E+L P       D  LDL            
Sbjct: 423 KVGTNNPVFLLDEVDKMSTDFRGDPAAALLEVLDPEQNHTFNDHYLDL-----------D 471

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY-EIEDL----KTIVQRGAKLTGLAV 203
            +LS    I     +  +  PLQDR  + I+L+ Y E E L    K +V R  K  GL  
Sbjct: 472 YDLSDVMFITTANTLSGIPVPLQDRMEV-IQLSGYTEFEKLNIAVKYLVPRQRKECGLED 530

Query: 204 TDEAACEIAMRS 215
                 E A+R+
Sbjct: 531 VSLDFTEGALRT 542


>gi|45655620|ref|YP_003429.1| methanol dehydrogenase regulator [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45602591|gb|AAS72066.1| methanol dehydrogenase regulator [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 357

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 98/222 (44%), Gaps = 43/222 (19%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLE-----EFTGQVEACSNLKVFIEAAKARAEALD 55
           +M++E L       ED + + ++  TL+     E TGQ E   N+ V +           
Sbjct: 30  LMEKETL-------EDLEFARIKLETLKQELGKEITGQDEVIRNVLVCLICQ-------G 75

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALL------TNLEDRD-- 107
           HVL  G PGL KT LA+ +A  L +NF+           DL   +      T  E R   
Sbjct: 76  HVLLEGMPGLAKTLLARSLASALDLNFKRIQFTPDLLPADLVGTVVFNPKTTEFETRKGP 135

Query: 108 ----VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
               VL  DEI+R    V+  L  +ME  +  + +G+    ++ K++   F +IA    +
Sbjct: 136 VFTGVLLADEINRAPAKVQSALLESME--EKTVTIGD----KTYKLD-KPFLVIATQNPI 188

Query: 164 GLL-TNPL----QDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
               T PL     DRF + I +++  +E+  +I+ +  K++ 
Sbjct: 189 DQDGTYPLPEAQMDRFLMKINVDYPTLEEEVSILDQHGKISS 230


>gi|87125051|ref|ZP_01080898.1| cell division protein [Synechococcus sp. RS9917]
 gi|86167371|gb|EAQ68631.1| cell division protein [Synechococcus sp. RS9917]
          Length = 616

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 197 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 227


>gi|330809354|ref|YP_004353816.1| cell division protein ftsH [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327377462|gb|AEA68812.1| putative cell division protein ftsH [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 608

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 47/92 (51%), Gaps = 8/92 (8%)

Query: 34  VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK- 92
           VE  S LK   + A+  A      L VGPPG GKT +A+ +A E GV F S SG    + 
Sbjct: 169 VEIVSFLKDKAKYARLGAHIPKGTLLVGPPGTGKTLVAKAIAGEAGVPFFSISGSEFVEM 228

Query: 93  -AGDLAALLTNLEDRD------VLFIDEIHRL 117
             G  AA + +L ++       ++FIDE+  L
Sbjct: 229 FVGVGAARVHDLFEQARQAAPCIIFIDELDAL 260


>gi|318042673|ref|ZP_07974629.1| cell division protein FtsH [Synechococcus sp. CB0101]
          Length = 614

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 195 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 225


>gi|291459314|ref|ZP_06598704.1| cell division protein FtsH [Oribacterium sp. oral taxon 078 str.
           F0262]
 gi|291418568|gb|EFE92287.1| cell division protein FtsH [Oribacterium sp. oral taxon 078 str.
           F0262]
          Length = 692

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 37/65 (56%), Gaps = 8/65 (12%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VL 109
           L VGPPG GKT LA+ VA E GV F S SG    +   G  AA + +L ++       ++
Sbjct: 270 LLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEMFVGMGAAKVRDLFEQAKKKSPCII 329

Query: 110 FIDEI 114
           FIDEI
Sbjct: 330 FIDEI 334


>gi|260436648|ref|ZP_05790618.1| cell division protease FtsH [Synechococcus sp. WH 8109]
 gi|260414522|gb|EEX07818.1| cell division protease FtsH [Synechococcus sp. WH 8109]
          Length = 616

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 197 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 227


>gi|222623676|gb|EEE57808.1| hypothetical protein OsJ_08386 [Oryza sativa Japonica Group]
          Length = 1167

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK-----AGDLAALLTNLEDR---DV 108
           VL  GPPG GKT LA+ +A E G NF S +G  +       A  L   L +   R    +
Sbjct: 914 VLLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASRLAPVI 973

Query: 109 LFIDEIHRL 117
           +F+DE+  L
Sbjct: 974 IFVDEVDSL 982


>gi|18401040|ref|NP_565616.1| ftsh4 (FtsH protease 4); ATP-dependent peptidase/ ATPase/
           metallopeptidase [Arabidopsis thaliana]
 gi|75100022|sp|O80983|FTSH4_ARATH RecName: Full=ATP-dependent zinc metalloprotease FTSH 4,
           mitochondrial; Short=AtFTSH4; Flags: Precursor
 gi|20197264|gb|AAC31223.2| FtsH protease, putative [Arabidopsis thaliana]
 gi|330252705|gb|AEC07799.1| cell division protease ftsH-4 [Arabidopsis thaliana]
          Length = 717

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 263 VLLVGPPGTGKTMLARAIAGEAGVPFFSCSG 293


>gi|78211853|ref|YP_380632.1| FtsH peptidase [Synechococcus sp. CC9605]
 gi|78196312|gb|ABB34077.1| ATP-dependent metalloprotease FtsH [Synechococcus sp. CC9605]
          Length = 616

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 197 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 227


>gi|61806330|ref|YP_214689.1| clamp loader subunit [Prochlorococcus phage P-SSM4]
 gi|61563874|gb|AAX46929.1| clamp loader subunit [Prochlorococcus phage P-SSM4]
          Length = 292

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 52/106 (49%), Gaps = 15/106 (14%)

Query: 38  SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP--------V 89
           S  K F+E  +     + ++L  G  G+GKTT+A+ +  ELG +F   +G         V
Sbjct: 3   STFKSFVEQGE-----IPNLLLSGTAGVGKTTIAKALCNELGADFYVINGSDEGRFLDTV 57

Query: 90  IAKAGDLAAL--LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             +A + AA   LT      VL IDE    +  V+ +L  ++E+FQ
Sbjct: 58  RNQAKNFAATVSLTAGAKHKVLIIDEADNTTPDVQLLLRASIEEFQ 103


>gi|33864841|ref|NP_896400.1| cell division protein FtsH2 [Synechococcus sp. WH 8102]
 gi|33632364|emb|CAE06820.1| cell division protein FtsH2 [Synechococcus sp. WH 8102]
          Length = 615

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 196 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 226


>gi|328543682|ref|YP_004303791.1| ATP-dependent Clp protease ATP-binding subunit ClpX [polymorphum
           gilvum SL003B-26A1]
 gi|326413426|gb|ADZ70489.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Polymorphum
           gilvum SL003B-26A1]
          Length = 421

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L VGP G GKT LAQ +AR L V F       + +AG +   + N+         
Sbjct: 110 AKSNILLVGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 169

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDE+ ++S
Sbjct: 170 YNVERAQRGIVYIDEVDKIS 189


>gi|323701589|ref|ZP_08113261.1| ATP-dependent metalloprotease FtsH [Desulfotomaculum nigrificans
           DSM 574]
 gi|323533362|gb|EGB23229.1| ATP-dependent metalloprotease FtsH [Desulfotomaculum nigrificans
           DSM 574]
          Length = 608

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           EE    V+   N K F E     A+    VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 168 EELAEIVDFLKNPKKFNEIG---AKIPKGVLLFGPPGTGKTLLARAVAGEAGVPFFSISG 224


>gi|323356263|gb|EGA88067.1| Pim1p [Saccharomyces cerevisiae VL3]
          Length = 1133

 Score = 41.6 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 50/208 (24%), Positives = 86/208 (41%), Gaps = 34/208 (16%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLA 71
           S+E   I   +    E+  G V+    +  FI   K   +    ++ FVGPPG+GKT++ 
Sbjct: 583 SKEQYSIPRAKKILDEDHYGMVDVKDRILEFIAVGKLLGKVDGKIICFVGPPGVGKTSIG 642

Query: 72  QVVARELGVN-FRSTSGPVI--------------AKAGDLAALLTNLEDRD-VLFIDEIH 115
           + +AR L    FR + G +               A  G +   L   + ++ ++ IDEI 
Sbjct: 643 KSIARALNRKFFRFSVGGMTDVAEIKGHRRTYIGALPGRVVQALKKCQTQNPLILIDEID 702

Query: 116 RL---------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
           ++         S  + E+L P   +  LD       +   + I+LS+   +     +  +
Sbjct: 703 KIGHGGIHGDPSAALLEVLDPEQNNSFLD-------NYLDIPIDLSKVLFVCTANSLETI 755

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
             PL DR  + I L  Y  ED   I ++
Sbjct: 756 PRPLLDRMEV-IELTGYVAEDKVKIAEQ 782


>gi|315425454|dbj|BAJ47117.1| AAA family ATPase [Candidatus Caldiarchaeum subterraneum]
          Length = 726

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 46/105 (43%), Gaps = 16/105 (15%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
           T E+  G  +    ++  IE      E   H        V+  GPPG GKT +A+ +A E
Sbjct: 183 TYEDIGGLHDELQRIREMIELPLKHPELFRHLGIEPPKGVILYGPPGTGKTLIAKAIANE 242

Query: 78  LGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DVLFIDEI 114
            G +F S +GP I     G+  A L  +          ++FIDE+
Sbjct: 243 TGAHFVSINGPEIMSKFYGESEARLREVFQEAEQNAPSIIFIDEL 287



 Score = 39.3 bits (90), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 495 ILLYGPPGTGKTLLAKAVATESQANFISVKGP 526


>gi|309355098|emb|CAP39475.2| hypothetical protein CBG_22959 [Caenorhabditis briggsae AF16]
          Length = 551

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 5/56 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           RP  L E     +    L  FIE        L H+LF GPPG GKTT     AR++
Sbjct: 233 RPSKLNELVAHEQVVKTLTKFIEN-----RTLPHLLFYGPPGTGKTTTVLAAARKM 283


>gi|297825729|ref|XP_002880747.1| hypothetical protein ARALYDRAFT_481469 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297326586|gb|EFH57006.1| hypothetical protein ARALYDRAFT_481469 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 718

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 263 VLLVGPPGTGKTMLARAIAGEAGVPFFSCSG 293


>gi|296420764|ref|XP_002839938.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295636146|emb|CAZ84129.1| unnamed protein product [Tuber melanosporum]
          Length = 422

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 64/148 (43%), Gaps = 17/148 (11%)

Query: 22  LRPRTLEEFTGQ--VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +RP+ L++  GQ  V     L+  IE  K  +     ++  G  G GKTT+A+V+A    
Sbjct: 1   MRPKNLDDIHGQELVGRRGVLRGLIEEGKVPS-----MILWGAAGCGKTTIARVIAAMSS 55

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDF 132
             F   S    +   D   +    ++       R +LF DEIHR +   +++    +E  
Sbjct: 56  CRFIEISATA-SGVNDCKKIFIEAKNELVLTGRRTILFCDEIHRYTKAQQDVFLAPVEKG 114

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIA 158
           ++ L+    E PS +     LSR    A
Sbjct: 115 EITLIGATTENPSFKVQSALLSRCRTFA 142


>gi|295674557|ref|XP_002797824.1| ribosome biogenesis ATPase RIX7 [Paracoccidioides brasiliensis
           Pb01]
 gi|226280474|gb|EEH36040.1| ribosome biogenesis ATPase RIX7 [Paracoccidioides brasiliensis
           Pb01]
          Length = 746

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 35/72 (48%), Gaps = 3/72 (4%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           ADI  L     E  T  VE   N +++   A+    A   VL  GPPG GKT LA+ VA 
Sbjct: 485 ADIGALGGIRDELSTAIVEPIRNPEIY---ARVGITAPTGVLLWGPPGCGKTLLAKAVAN 541

Query: 77  ELGVNFRSTSGP 88
           E   NF S  GP
Sbjct: 542 ESRANFISVKGP 553



 Score = 39.7 bits (91), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDL-AALLTNLEDRD-----V 108
           VL  GPPG GKT +A   A ELGV F + S P I    +G+   AL  + E+       +
Sbjct: 244 VLLHGPPGCGKTMIANAFAAELGVPFIAISAPSIVSGMSGESEKALREHFEEAKKVAPCL 303

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 304 VFIDEIDAIT 313


>gi|221505298|gb|EEE30952.1| paraplegin, putative [Toxoplasma gondii VEG]
          Length = 1188

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
            L VGPPG GKT LA+ VA E GV F S SG    +   G  A+ +  L D        +
Sbjct: 678 ALLVGPPGTGKTLLAKAVAGEAGVPFFSMSGSEFVEIFVGVGASRVRELFDEARKVAPSI 737

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 738 IFIDEI 743


>gi|221484027|gb|EEE22331.1| peptidase M14 family protein [Toxoplasma gondii GT1]
          Length = 1188

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
            L VGPPG GKT LA+ VA E GV F S SG    +   G  A+ +  L D        +
Sbjct: 678 ALLVGPPGTGKTLLAKAVAGEAGVPFFSMSGSEFVEIFVGVGASRVRELFDEARKVAPSI 737

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 738 IFIDEI 743


>gi|163796890|ref|ZP_02190847.1| AAA ATPase, central region [alpha proteobacterium BAL199]
 gi|159177879|gb|EDP62428.1| AAA ATPase, central region [alpha proteobacterium BAL199]
          Length = 403

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 48/105 (45%), Gaps = 12/105 (11%)

Query: 47  AKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALL------ 100
           AK R   L   +  GPPG GKTT+A+++A    + F   S  V +   DL          
Sbjct: 13  AKGR---LASCILWGPPGCGKTTIARLLAEHTDLEFVPLSA-VFSGVADLKKHFEAARGR 68

Query: 101 TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPS 143
                  +LF+DE+HR +   ++   P +ED  + L+    E PS
Sbjct: 69  RAGGRGTLLFVDEVHRFNRAQQDGFLPVVEDGTITLVGATTENPS 113


>gi|454438|gb|AAA53625.1| LON gene of S. cerevisiae is downstream of the HAP 3 gene; Putative
           ATP-binding motif bp 1960 to bp 1986.; Putative
           catalytic site serine of serine proteases from bp 3109
           to bp 3111 [Saccharomyces cerevisiae]
          Length = 1133

 Score = 41.6 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 50/208 (24%), Positives = 86/208 (41%), Gaps = 34/208 (16%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLA 71
           S+E   I   +    E+  G V+    +  FI   K   +    ++ FVGPPG+GKT++ 
Sbjct: 583 SKEQYSIPRAKKILDEDHYGMVDVKDRILEFIAVGKLLGKVDGKIICFVGPPGVGKTSIG 642

Query: 72  QVVARELGVN-FRSTSGPVI--------------AKAGDLAALLTNLEDRD-VLFIDEIH 115
           + +AR L    FR + G +               A  G +   L   + ++ ++ IDEI 
Sbjct: 643 KSIARALNRKFFRFSVGGMTDVAEIKGHRRTYIGALPGRVVQALKKCQTQNPLILIDEID 702

Query: 116 RL---------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
           ++         S  + E+L P   +  LD       +   + I+LS+   +     +  +
Sbjct: 703 KIGHGGIHGDPSAALLEVLDPEQNNSFLD-------NYLDIPIDLSKVLFVCTANSLETI 755

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
             PL DR  + I L  Y  ED   I ++
Sbjct: 756 PRPLLDRMEV-IELTGYVAEDKVKIAEQ 782


>gi|28493555|ref|NP_787716.1| cell division protein FtsH [Tropheryma whipplei str. Twist]
 gi|81437733|sp|Q83FV7|FTSH_TROWT RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|28476597|gb|AAO44685.1| cell division protein FtsH [Tropheryma whipplei str. Twist]
          Length = 666

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 58/206 (28%), Positives = 96/206 (46%), Gaps = 20/206 (9%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           VL  GPPG GKT LA+ VA E GV F S SG    +   G  A+ + +L ++       +
Sbjct: 198 VLLFGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKQNSPSI 257

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQ--LDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
           +FIDEI  +            ++ +  L+ ++ E      VK N+    LIAAT R  +L
Sbjct: 258 IFIDEIDAVGRRRGSGFGGGHDEREQTLNQLLVEM-DGFDVKTNI---ILIAATNRSDVL 313

Query: 167 TNPL--QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGR 224
            + L    RF   + ++   ++    I+Q  A+   ++     + ++ + +R TP   G 
Sbjct: 314 DSALLRPGRFDRHVAIDAPNLQGRLKILQVHARTKPVS----KSVDLEVLARKTPGFTGA 369

Query: 225 LLRRVRDFAEVAHAKTITREIADAAL 250
            L  V + A +  A++  + I D AL
Sbjct: 370 DLANVLNEAALLTARSNAQIIDDRAL 395


>gi|37522710|ref|NP_926087.1| cell division protein [Gloeobacter violaceus PCC 7421]
 gi|35213712|dbj|BAC91082.1| cell division protein [Gloeobacter violaceus PCC 7421]
          Length = 626

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL VGPPG GKT LA+ VA E GV F S SG    +   G  AA + +L ++       +
Sbjct: 204 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVELFVGVGAARVRDLFEQAKQQAPCI 263

Query: 109 LFIDEI 114
           +FIDE+
Sbjct: 264 IFIDEL 269


>gi|88798488|ref|ZP_01114073.1| putative ABC transporter ATP-binding protein [Reinekea sp. MED297]
 gi|88778928|gb|EAR10118.1| putative ABC transporter ATP-binding protein [Reinekea sp. MED297]
          Length = 388

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 36/64 (56%), Gaps = 4/64 (6%)

Query: 55  DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEI 114
           +H+  VGP G GKTTL +++A   G++   TSG +     D+A LL +L DR  L   E 
Sbjct: 178 EHLAIVGPSGAGKTTLGKLLA---GIHI-PTSGQLRLGGVDVAELLASLPDRITLLTQET 233

Query: 115 HRLS 118
           H  S
Sbjct: 234 HVFS 237


>gi|87301887|ref|ZP_01084721.1| cell division protein [Synechococcus sp. WH 5701]
 gi|87283455|gb|EAQ75410.1| cell division protein [Synechococcus sp. WH 5701]
          Length = 614

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 195 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 225


>gi|237733854|ref|ZP_04564335.1| recombination protein rarA [Mollicutes bacterium D7]
 gi|229383192|gb|EEO33283.1| recombination protein rarA [Coprobacillus sp. D7]
          Length = 421

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 58/114 (50%), Gaps = 11/114 (9%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP+ L++  GQ   V   + L  F++ +   +     ++  G PG GKTT+A  +A +L
Sbjct: 9   MRPQNLKDIIGQQHLVGPNAILTKFVQKSHPFS-----IILYGSPGCGKTTIAMALANDL 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLF--IDEIHRLSIIVEEILYPAME 130
            + +R  +     K  ++ A++   +    LF  IDE+HRL+   ++ L   ME
Sbjct: 64  DIPYRIFNASTGNKK-EMDAIIEEAKLSGSLFVIIDEVHRLNKARQDDLLSHME 116


>gi|227824810|ref|ZP_03989642.1| ATP-dependent metalloprotease ftsH [Acidaminococcus sp. D21]
 gi|226905309|gb|EEH91227.1| ATP-dependent metalloprotease ftsH [Acidaminococcus sp. D21]
          Length = 646

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 37/101 (36%), Positives = 49/101 (48%), Gaps = 15/101 (14%)

Query: 29  EFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +  G  EA   L+  +E  KA        A+    VL  GPPG GKT LA+ VA E GV 
Sbjct: 155 DVAGADEAKQELREVVEFLKAPQKYNQLGAKIPKGVLLYGPPGTGKTLLAKAVAGEAGVP 214

Query: 82  FRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEI 114
           F S SG    +   G  A+ + +L D+       ++FIDEI
Sbjct: 215 FFSISGSDFVEMFVGVGASRVRDLFDQAKKNAPCIVFIDEI 255


>gi|220904981|ref|YP_002480293.1| ATP-dependent metalloprotease FtsH [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219869280|gb|ACL49615.1| ATP-dependent metalloprotease FtsH [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 676

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           +E    VE  SN K F        +    VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 164 DELAEVVEFLSNPKKFTRLGGRIPKG---VLLVGPPGTGKTLLARAVAGEAGVPFFSISG 220


>gi|237836501|ref|XP_002367548.1| AFG3 ATPase family protein [Toxoplasma gondii ME49]
 gi|211965212|gb|EEB00408.1| AFG3 ATPase family protein [Toxoplasma gondii ME49]
          Length = 1188

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
            L VGPPG GKT LA+ VA E GV F S SG    +   G  A+ +  L D        +
Sbjct: 678 ALLVGPPGTGKTLLAKAVAGEAGVPFFSMSGSEFVEIFVGVGASRVRELFDEARKVAPSI 737

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 738 IFIDEI 743


>gi|151946373|gb|EDN64595.1| ATP-dependent protease [Saccharomyces cerevisiae YJM789]
 gi|190408847|gb|EDV12112.1| ATP-dependent protease [Saccharomyces cerevisiae RM11-1a]
 gi|207347833|gb|EDZ73885.1| YBL022Cp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|256269260|gb|EEU04582.1| Pim1p [Saccharomyces cerevisiae JAY291]
 gi|259144824|emb|CAY77763.1| Pim1p [Saccharomyces cerevisiae EC1118]
 gi|323334752|gb|EGA76125.1| Pim1p [Saccharomyces cerevisiae AWRI796]
 gi|323338803|gb|EGA80018.1| Pim1p [Saccharomyces cerevisiae Vin13]
          Length = 1133

 Score = 41.6 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 50/208 (24%), Positives = 86/208 (41%), Gaps = 34/208 (16%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLA 71
           S+E   I   +    E+  G V+    +  FI   K   +    ++ FVGPPG+GKT++ 
Sbjct: 583 SKEQYSIPRAKKILDEDHYGMVDVKDRILEFIAVGKLLGKVDGKIICFVGPPGVGKTSIG 642

Query: 72  QVVARELGVN-FRSTSGPVI--------------AKAGDLAALLTNLEDRD-VLFIDEIH 115
           + +AR L    FR + G +               A  G +   L   + ++ ++ IDEI 
Sbjct: 643 KSIARALNRKFFRFSVGGMTDVAEIKGHRRTYIGALPGRVVQALKKCQTQNPLILIDEID 702

Query: 116 RL---------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
           ++         S  + E+L P   +  LD       +   + I+LS+   +     +  +
Sbjct: 703 KIGHGGIHGDPSAALLEVLDPEQNNSFLD-------NYLDIPIDLSKVLFVCTANSLETI 755

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
             PL DR  + I L  Y  ED   I ++
Sbjct: 756 PRPLLDRMEV-IELTGYVAEDKVKIAEQ 782


>gi|150866932|ref|XP_001386694.2| hypothetical protein PICST_64463 [Scheffersomyces stipitis CBS
           6054]
 gi|149388188|gb|ABN68665.2| predicted protein [Scheffersomyces stipitis CBS 6054]
          Length = 935

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 72/176 (40%), Gaps = 41/176 (23%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF------------------RSTSGPVIAKAGDLAA 98
           +   GPPG GKT++A+ +A  L   +                  R+  G +  +   ++A
Sbjct: 403 LCLTGPPGTGKTSIAKSIAESLNRKYVRIAMGGIQDVHEVKGHRRTYVGSIPGRI--ISA 460

Query: 99  LLTNLEDRDVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN 150
           L        ++ IDEI +L        S    EIL P   +  +D  +        VK++
Sbjct: 461 LKQAKTSNPLMLIDEIDKLDLSRSGGASSAFLEILDPEQNNAFVDNYI-------DVKVD 513

Query: 151 LSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR-----GAKLTGL 201
           LS+   +     +G ++ PL+DR  I I +N Y   +   I +R      AK  GL
Sbjct: 514 LSKVLFVCTANYLGNISPPLRDRMEI-IEVNGYTNNEKIEIAKRHLIPDAAKKAGL 568


>gi|72390425|ref|XP_845507.1| replication factor C, subunit 2 [Trypanosoma brucei TREU927]
 gi|62360360|gb|AAX80776.1| replication factor C, subunit 2, putative [Trypanosoma brucei]
 gi|70802042|gb|AAZ11948.1| replication factor C, subunit 2, putative [Trypanosoma brucei
          brucei strain 927/4 GUTat10.1]
 gi|261328911|emb|CBH11889.1| replication factor C, subunit 2, putative [Trypanosoma brucei
          gambiense DAL972]
          Length = 347

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          I   RP++L+E   Q E    L+  +     +  ++ H LF GPPG GKTT    VA EL
Sbjct: 22 IEKYRPKSLDEVKSQEEVVQALRSTLR----QGASMPHFLFHGPPGTGKTTAILAVAHEL 77


>gi|57642154|ref|YP_184632.1| replication factor C large subunit [Thermococcus kodakarensis
          KOD1]
 gi|62287361|sp|Q5JHP1|RFCL_PYRKO RecName: Full=Replication factor C large subunit; Short=RFC large
          subunit; AltName: Full=Clamp loader large subunit
 gi|57160478|dbj|BAD86408.1| replication factor C, large subunit [Thermococcus kodakarensis
          KOD1]
          Length = 499

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAA-KARAEALDHVLFVGPPGLGKTTLAQVVARE 77
          +   RPR L E   Q +A   ++ ++EA           +L  GPPG+GKTT    +A E
Sbjct: 7  VEKYRPRKLSEIVNQEKALEQVRAWVEAWLHGNPPKKKALLLAGPPGVGKTTTVYALANE 66

Query: 78 LG 79
           G
Sbjct: 67 YG 68


>gi|6319449|ref|NP_009531.1| Pim1p [Saccharomyces cerevisiae S288c]
 gi|585414|sp|P36775|LONM_YEAST RecName: Full=Lon protease homolog, mitochondrial; Flags: Precursor
 gi|453236|emb|CAA52634.1| mitochondrial ATP-dependent protease [Saccharomyces cerevisiae]
 gi|536019|emb|CAA84841.1| PIM1 [Saccharomyces cerevisiae]
 gi|285810313|tpg|DAA07098.1| TPA: Pim1p [Saccharomyces cerevisiae S288c]
          Length = 1133

 Score = 41.6 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 50/208 (24%), Positives = 86/208 (41%), Gaps = 34/208 (16%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLA 71
           S+E   I   +    E+  G V+    +  FI   K   +    ++ FVGPPG+GKT++ 
Sbjct: 583 SKEQYSIPRAKKILDEDHYGMVDVKDRILEFIAVGKLLGKVDGKIICFVGPPGVGKTSIG 642

Query: 72  QVVARELGVN-FRSTSGPVI--------------AKAGDLAALLTNLEDRD-VLFIDEIH 115
           + +AR L    FR + G +               A  G +   L   + ++ ++ IDEI 
Sbjct: 643 KSIARALNRKFFRFSVGGMTDVAEIKGHRRTYIGALPGRVVQALKKCQTQNPLILIDEID 702

Query: 116 RL---------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
           ++         S  + E+L P   +  LD       +   + I+LS+   +     +  +
Sbjct: 703 KIGHGGIHGDPSAALLEVLDPEQNNSFLD-------NYLDIPIDLSKVLFVCTANSLETI 755

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
             PL DR  + I L  Y  ED   I ++
Sbjct: 756 PRPLLDRMEV-IELTGYVAEDKVKIAEQ 782


>gi|317968672|ref|ZP_07970062.1| cell division protein FtsH [Synechococcus sp. CB0205]
          Length = 614

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 195 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 225


>gi|303328061|ref|ZP_07358500.1| ATP-dependent protease La [Desulfovibrio sp. 3_1_syn3]
 gi|302861887|gb|EFL84822.1| ATP-dependent protease La [Desulfovibrio sp. 3_1_syn3]
          Length = 814

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 110/252 (43%), Gaps = 44/252 (17%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           + FVGPPG+GKT+LA+ VAR  G +F R + G V  +A              G +   L 
Sbjct: 355 LCFVGPPGVGKTSLAKSVARATGRDFIRLSLGGVRDEAEIRGHRRTYVGALPGKIIQSLK 414

Query: 102 NLEDRDVLF-IDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLS 152
            ++  + LF +DE+ +++            E+L P   +  +D  +        ++ +LS
Sbjct: 415 RVKYNNPLFCLDEVDKMTSDYRGDPASALLEVLDPEQNNTFMDHYL-------DLEYDLS 467

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIA 212
           +   I     +  +  PL DR  I I L+ Y +E  K  + R + L    V +    E  
Sbjct: 468 KVFFITTANSLHTIPVPLLDRMEI-IELSSY-LETEKRHIAR-SFLLPRQVEEHGLKE-- 522

Query: 213 MRSRGTPRIA-GRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMI 271
               G  RI+   LL  +R +   A  + + REI  AAL R    ++  D  DL     I
Sbjct: 523 ----GNIRISENALLEIIRGYTREAGVRNLEREI--AALCRKTAIRLVEDD-DLDKCVSI 575

Query: 272 ARNFGGGPVGIE 283
           +R    G +G++
Sbjct: 576 SRQSLQGFLGVK 587


>gi|224535858|ref|ZP_03676397.1| hypothetical protein BACCELL_00722 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522581|gb|EEF91686.1| hypothetical protein BACCELL_00722 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 742

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 4/74 (5%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKA----RAEALDHVLFVGPPGLGKTT 69
           ++   +  L  R   +  GQ EA   +   ++ +KA      + L  +LFVGP G+GKT 
Sbjct: 438 EDTTSLETLHARISAKIYGQEEAVRQVVEAVQMSKAGLLDENKPLASLLFVGPTGVGKTE 497

Query: 70  LAQVVARELGVNFR 83
           +A+V+A ELG++ +
Sbjct: 498 VAKVLASELGISLQ 511


>gi|218961502|ref|YP_001741277.1| DNA polymerase III, gamma/tau subunits (fragment) [Candidatus
           Cloacamonas acidaminovorans]
 gi|167730159|emb|CAO81071.1| DNA polymerase III, gamma/tau subunits (fragment) [Candidatus
           Cloacamonas acidaminovorans]
          Length = 533

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 11/111 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  +E   Q     ++   +++A A        LF GP G+GKT+LA+++A+ L    
Sbjct: 11  RPQNFKEVYAQ----EHITEILQSAIATNRIAHAYLFTGPRGVGKTSLARILAKSLNCVN 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI-----IVEEILYPA 128
             T+ P  A +  L   +T     DV+ ID     S+     +  E+LYPA
Sbjct: 67  GPTTTPCNACSNCLE--ITAGTSPDVIEIDGASNTSVDDIRELQRELLYPA 115


>gi|270307761|ref|YP_003329819.1| ATP-dependent metalloprotease, cell division protein
           [Dehalococcoides sp. VS]
 gi|270153653|gb|ACZ61491.1| ATP-dependent metalloprotease, cell division protein
           [Dehalococcoides sp. VS]
          Length = 499

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           +L +GPPG GKT LA+ +A E GV F S SG    +   G  A+ + +L D+       +
Sbjct: 86  ILLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFDQAKKNAPCI 145

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 146 IFIDEI 151


>gi|37521486|ref|NP_924863.1| cell division protein [Gloeobacter violaceus PCC 7421]
 gi|35212483|dbj|BAC89858.1| cell division protein [Gloeobacter violaceus PCC 7421]
          Length = 611

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 194 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 224


>gi|328768110|gb|EGF78157.1| hypothetical protein BATDEDRAFT_13267 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 611

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 376 VLLYGPPGCGKTLLAKAVANESHCNFISIKGP 407



 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           +L  GPPG GKT LA+ +A E GV F S + PVI    +G+    +  + +        +
Sbjct: 56  ILLHGPPGCGKTMLARAIAGEAGVPFISIAAPVIVSGMSGESEKKIREVFEEAKSLAPCI 115

Query: 109 LFIDEI 114
           LFIDEI
Sbjct: 116 LFIDEI 121


>gi|312281735|dbj|BAJ33733.1| unnamed protein product [Thellungiella halophila]
          Length = 717

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 263 VLLVGPPGTGKTMLARAIAGEAGVPFFSCSG 293


>gi|290976655|ref|XP_002671055.1| predicted protein [Naegleria gruberi]
 gi|284084620|gb|EFC38311.1| predicted protein [Naegleria gruberi]
          Length = 883

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 17/32 (53%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ ++ + G NF S  GP
Sbjct: 589 VLLYGPPGCGKTLLAKAISNDSGANFISIKGP 620



 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL------EDRDV 108
           +L  GPPG GKT LA  +A EL + F   S P I    +G+  A +  +          +
Sbjct: 262 ILLHGPPGCGKTMLANAIAGELQIPFLKVSAPEIVSGMSGESEAKIRQIFRDAISNAPSI 321

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 322 IFIDEI 327


>gi|270156950|ref|ZP_06185607.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Legionella
           longbeachae D-4968]
 gi|289164626|ref|YP_003454764.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Legionella
           longbeachae NSW150]
 gi|269988975|gb|EEZ95229.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Legionella
           longbeachae D-4968]
 gi|288857799|emb|CBJ11643.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Legionella
           longbeachae NSW150]
          Length = 424

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 58/134 (43%), Gaps = 28/134 (20%)

Query: 13  SQEDADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAE---------ALDHVL 58
           + E+A++ L  P+ +  F      GQ  A   L V +     R +            ++L
Sbjct: 55  THEEAEVQLPSPQEISGFLDEYVIGQAHAKKVLSVAVYNHYKRLQHKSEDGVELGKSNIL 114

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDV--- 108
            +GP G GKT LAQ +AR L V F       + +AG +   + N+        D DV   
Sbjct: 115 LIGPTGSGKTLLAQTLARILNVPFAMADATTLTEAGYVGEDVENIIQKLLQKCDYDVDKA 174

Query: 109 ----LFIDEIHRLS 118
               ++IDEI ++S
Sbjct: 175 QHGIVYIDEIDKIS 188


>gi|225375862|ref|ZP_03753083.1| hypothetical protein ROSEINA2194_01494 [Roseburia inulinivorans DSM
           16841]
 gi|225212297|gb|EEG94651.1| hypothetical protein ROSEINA2194_01494 [Roseburia inulinivorans DSM
           16841]
          Length = 598

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 187 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 217


>gi|224157403|ref|XP_002195915.1| PREDICTED: proteasome (prosome, macropain) 26S subunit, ATPase, 6,
           partial [Taeniopygia guttata]
          Length = 165

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 56/124 (45%), Gaps = 23/124 (18%)

Query: 8   LSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV--------L 58
           L  N+S ED  D+S        E  G  E    L+  IE      E    V        L
Sbjct: 32  LVYNMSHEDPGDVSY------SEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCL 85

Query: 59  FVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA-GDLAALLTNLED--RD----VLF 110
             GPPG GKT LA+ VA +L  NF +  S  ++ K  G+ A L+  + +  RD    ++F
Sbjct: 86  LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIF 145

Query: 111 IDEI 114
           +DEI
Sbjct: 146 MDEI 149


>gi|198425284|ref|XP_002119398.1| PREDICTED: similar to Replication factor C (activator 1) 3 [Ciona
           intestinalis]
          Length = 355

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 93/229 (40%), Gaps = 40/229 (17%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL---G 79
           RP++L +    +E   NLK  +E          H+LF GPPG GK T    + RE+   G
Sbjct: 9   RPKSLNKLDYHLEQAENLKKLVENGD-----FPHLLFYGPPGAGKKTRIMCLLREVYGSG 63

Query: 80  V--------NFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
           V        NF + S     K  ++AAL +N    +V   D      ++V+E++    + 
Sbjct: 64  VEKLRIEKHNFVTPS----KKKLEIAALSSNYHI-EVTPSDAGMHDRVVVQELIKTVAQS 118

Query: 132 FQL----------------DLMVGEGPSA--RSVKINLSRFTLIAATTRVGLLTNPLQDR 173
            QL                D +  +   A  R+++  +S   LI        +   +Q R
Sbjct: 119 HQLESKAQKRFKVIVLTEVDRLTRDAQHALRRTMEKYMSTCRLILYCNSTSKVIPAIQSR 178

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
             + +R+    I+D+  I+    K  G  +  E A  IA+ S+   R A
Sbjct: 179 -CLAVRVAAPSIDDVIKILTSVGKKEGHPIPQELARRIAVASKRNLRRA 226


>gi|254416578|ref|ZP_05030329.1| ATP-dependent metallopeptidase HflB subfamily [Microcoleus
           chthonoplastes PCC 7420]
 gi|196176544|gb|EDX71557.1| ATP-dependent metallopeptidase HflB subfamily [Microcoleus
           chthonoplastes PCC 7420]
          Length = 629

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 199 VLLVGPPGTGKTMLAKAIAGEAGVPFFSISG 229


>gi|167957354|ref|ZP_02544428.1| hypothetical protein cdiviTM7_01719 [candidate division TM7
           single-cell isolate TM7c]
          Length = 373

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 54/121 (44%), Gaps = 21/121 (17%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTS-GPVIAKAGDL------------AALLTNL 103
           V   G  G GK+T A+ +A EL ++FRS S GP  +KA DL             A     
Sbjct: 6   VWLYGEAGSGKSTAAEQMADELDLSFRSISLGPSTSKA-DLMGYRDATGEYRSTAYRETY 64

Query: 104 EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
           ED  V   DEI      V  IL  ++ + Q     GE P  R  + + +RF  IAA   +
Sbjct: 65  EDGGVFLFDEIDNAHPSVLTILNNSIANNQ-----GEFPDKRISRHDDTRF--IAAANTI 117

Query: 164 G 164
           G
Sbjct: 118 G 118


>gi|73544229|ref|XP_848009.1| replication factor C, subunit 4 [Leishmania major strain
          Friedlin]
 gi|321438363|emb|CBZ12115.1| putative replication factor C, subunit 4 [Leishmania major strain
          Friedlin]
          Length = 360

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+T+ +  G  EA S L+V      A+   L ++L  GPPG GKTT    +AR+L
Sbjct: 13 RPQTVVDIVGNTEAISRLQVI-----AKQGNLPNLLLCGPPGTGKTTSMLCLARDL 63


>gi|12045316|ref|NP_073127.1| ATP-dependent metalloprotease FtsH [Mycoplasma genitalium G37]
 gi|255660039|ref|ZP_05405448.1| ATP-dependent metalloprotease FtsH [Mycoplasma genitalium G37]
 gi|1346047|sp|P47695|FTSH_MYCGE RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|3845051|gb|AAC72477.1| ATP-dependent metalloprotease FtsH [Mycoplasma genitalium G37]
 gi|166078722|gb|ABY79340.1| ATP-dependent metalloprotease FtsH [synthetic Mycoplasma genitalium
           JCVI-1.0]
          Length = 702

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 103/211 (48%), Gaps = 26/211 (12%)

Query: 34  VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK- 92
           +E    LK  ++ A+  A +   V+  GPPG GKT LA+ VA E GV F  ++G      
Sbjct: 244 LEIVDYLKNPLKYAQMGARSPRGVILYGPPGTGKTLLAKAVAGEAGVPFFQSTGSGFEDM 303

Query: 93  -AGDLAALLTNLEDRD------VLFIDEIHRLSII---VEEILYPAMEDFQLDLMVGE-- 140
             G  A  + +L ++       ++FIDEI  +      VE   Y  +E   L+ ++ E  
Sbjct: 304 LVGVGAKRVRDLFNKAKKAAPCIIFIDEIDSVGSKRGRVELSSYSVVEQ-TLNQLLAEMD 362

Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPL--QDRFGIPIRLNFYEIEDLKTIVQRGAKL 198
           G ++R+  +      ++AAT R+ +L + L    RF   I++N  +I++ + I++  A+ 
Sbjct: 363 GFTSRTGVV------VMAATNRLDVLDDALLRPGRFDRHIQINLPDIKEREGILKVHAEN 416

Query: 199 TGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
             L+ +  +  ++A R   TP  +G  L  V
Sbjct: 417 KNLS-SKISLLDVAKR---TPGFSGAQLENV 443


>gi|6324000|ref|NP_014070.1| Pex6p [Saccharomyces cerevisiae S288c]
 gi|464348|sp|P33760|PEX6_YEAST RecName: Full=Peroxisomal ATPase PEX6; AltName: Full=Peroxin-6;
           AltName: Full=Peroxisomal assembly protein 8; AltName:
           Full=Peroxisome biosynthesis protein PAS8
 gi|393287|gb|AAA16574.1| PAS8 [Saccharomyces cerevisiae]
 gi|633657|emb|CAA86369.1| PAS8 gene [Saccharomyces cerevisiae]
 gi|1302449|emb|CAA96261.1| PAS8 [Saccharomyces cerevisiae]
 gi|285814340|tpg|DAA10234.1| TPA: Pex6p [Saccharomyces cerevisiae S288c]
          Length = 1030

 Score = 41.6 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 4/48 (8%)

Query: 41  KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           ++F    K R+     +LF GPPG GKT +A+ +A    +NF S  GP
Sbjct: 756 ELFTSGMKKRS----GILFYGPPGTGKTLMAKAIATNFSLNFFSVKGP 799


>gi|88807968|ref|ZP_01123479.1| cell division protein FtsH2 [Synechococcus sp. WH 7805]
 gi|88788007|gb|EAR19163.1| cell division protein FtsH2 [Synechococcus sp. WH 7805]
          Length = 616

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 197 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 227


>gi|313897563|ref|ZP_07831105.1| endopeptidase La [Clostridium sp. HGF2]
 gi|312957515|gb|EFR39141.1| endopeptidase La [Clostridium sp. HGF2]
          Length = 774

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 85/207 (41%), Gaps = 44/207 (21%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTS-GPVIAKA---GDLAALLTNLEDR------ 106
           +  VGPPG+GKT+LA+ VAR L   F   S G V  ++   G     L ++  R      
Sbjct: 353 ICLVGPPGVGKTSLAKSVARALDRKFVKISLGGVKDESEIRGHRRTYLGSMPGRFIQAMK 412

Query: 107 ------DVLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLS 152
                  V  IDEI +++   +        E+L P       D  + E         +LS
Sbjct: 413 KAGTVNPVFLIDEIDKMASDYKGDPASAMLEVLDPEQNSLFSDHYIEE-------PYDLS 465

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL---------KTIVQRGAKLTGLAV 203
           +   IA    +  + N L+DR  I    ++ E+E +         K I + G K + L +
Sbjct: 466 KVLFIATANYLENIPNALRDRLEIIELSSYTELEKIEIAKRHLVPKQIKENGLKTSQLKI 525

Query: 204 TDEAACEIAMRSRGTPRIAG-RLLRRV 229
            DE    I+   R   R +G R L RV
Sbjct: 526 DDEM---ISFLIRYYTRESGVRQLERV 549


>gi|289643070|ref|ZP_06475201.1| Shikimate kinase [Frankia symbiont of Datisca glomerata]
 gi|289507114|gb|EFD28082.1| Shikimate kinase [Frankia symbiont of Datisca glomerata]
          Length = 229

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 21/38 (55%), Positives = 27/38 (71%)

Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG 94
          V+ VGPPG GKTT+ +++AR L V FR T   V A+AG
Sbjct: 45 VVLVGPPGSGKTTVGRLLARRLDVAFRDTDVDVEARAG 82


>gi|269218252|ref|ZP_06162106.1| putative cell division protein [Actinomyces sp. oral taxon 848 str.
           F0332]
 gi|269212380|gb|EEZ78720.1| putative cell division protein [Actinomyces sp. oral taxon 848 str.
           F0332]
          Length = 1002

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 34/68 (50%), Gaps = 7/68 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIE--AAKARAEALDH-----VLFVGPPGLGKTTLAQVVAREL 78
           T  +  G+ EA + L+   E   A  R  AL       VL  GPPG GKT LA+ VA E 
Sbjct: 240 TFNDVAGEDEAVAELREITEFLTAPERFHALGAEIPRGVLLYGPPGTGKTLLARAVAGEA 299

Query: 79  GVNFRSTS 86
           GV F S S
Sbjct: 300 GVPFYSIS 307


>gi|242398512|ref|YP_002993936.1| CDC48/VCP like protein, AAA superfamily [Thermococcus sibiricus MM
           739]
 gi|242264905|gb|ACS89587.1| CDC48/VCP like protein, AAA superfamily [Thermococcus sibiricus MM
           739]
          Length = 810

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 16/109 (14%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
           T E+  G  +A   ++  IE      E  +         VL  GPPG GKT LA+ VA E
Sbjct: 180 TYEDIGGLKDAIQKIREMIELPLKHPEVFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANE 239

Query: 78  LGVNFRSTSGPVIAKA--GD----LAALLTNLEDR--DVLFIDEIHRLS 118
              +F + +GP I     G+    L  +    E+    ++FIDEI  ++
Sbjct: 240 ANAHFIAINGPEIMSKYYGESEERLREVFKESEENAPSIIFIDEIDAIA 288



 Score = 37.0 bits (84), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 20/34 (58%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT LA+ VA E   NF    GP +
Sbjct: 555 ILLYGPPGTGKTLLAKAVATESEANFIGIRGPEV 588


>gi|198433804|ref|XP_002132122.1| PREDICTED: similar to YME1-like 1 [Ciona intestinalis]
          Length = 702

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108
           +L +GPPG GKT LA+ VA E GV F  T+G       V   A  +  L  N   +   +
Sbjct: 271 ILLIGPPGTGKTLLAKAVAGESGVPFFYTAGSEFDEMFVGIGASRIRKLFENARKQAPSI 330

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 331 IFIDEI 336


>gi|123505671|ref|XP_001329029.1| ATPase, AAA family protein [Trichomonas vaginalis G3]
 gi|121911979|gb|EAY16806.1| ATPase, AAA family protein [Trichomonas vaginalis G3]
          Length = 325

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 34/65 (52%), Gaps = 7/65 (10%)

Query: 23 RPRTLEEFTGQVEAC-SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
          RP  L++     EAC S +K FI+        L H+ F GPPG GKTT A  ++ +L  N
Sbjct: 14 RPSKLDDVVSH-EACISTIKKFIDK-----NCLPHLCFHGPPGTGKTTTAIAISHQLYGN 67

Query: 82 FRSTS 86
            S S
Sbjct: 68 DTSMS 72


>gi|3820564|gb|AAC84037.1| ATP-dependent zinc metallopeptidase FtsH [Heliobacillus mobilis]
          Length = 601

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 32/60 (53%), Gaps = 3/60 (5%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           EE    V+   + K F+E     A+    VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 168 EELQEVVDFLKHPKKFVELG---AKIPKGVLLFGPPGTGKTLLARAVAGEAGVPFFSISG 224


>gi|322828516|gb|EFZ32279.1| replication factor C, subunit 4, putative [Trypanosoma cruzi]
          Length = 340

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+++E+  G  +A S L+V      ++   L ++L  GPPG GKTT    +AR L
Sbjct: 13 RPKSMEDIVGNADAVSRLRVI-----SKEGNLPNLLLCGPPGTGKTTSVLCLARTL 63


>gi|313114238|ref|ZP_07799786.1| putative ATP-dependent metalloprotease [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310623432|gb|EFQ06839.1| putative ATP-dependent metalloprotease [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 612

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 50/101 (49%), Gaps = 15/101 (14%)

Query: 29  EFTGQVEACSNLKVFIEAAK--ARAEAL-----DHVLFVGPPGLGKTTLAQVVARELGVN 81
           +F G+ EA  NL+  ++      + E++       +L VGPPG GKT LA+ VA E  V 
Sbjct: 168 DFAGEDEAKENLQEIVDYLHDPGKYESIGASMPKGILLVGPPGTGKTMLAKAVAGESNVP 227

Query: 82  FRSTSGPVIAK------AGDLAALLTNLEDRD--VLFIDEI 114
           F S SG    +      A  +  L    +++   ++FIDEI
Sbjct: 228 FFSISGSEFVEMFVGMGASKVRDLFRQAKEKAPCIVFIDEI 268


>gi|307108040|gb|EFN56281.1| hypothetical protein CHLNCDRAFT_145161 [Chlorella variabilis]
          Length = 328

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RPRTL++ +   +    ++  ++  +     L H+LF GPPG GKT+    +ARE+
Sbjct: 15 RPRTLDQISAHTDIIDTIRKLLDENQ-----LPHLLFYGPPGTGKTSTILAIAREI 65


>gi|307265244|ref|ZP_07546802.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306919688|gb|EFN49904.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 510

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 52/121 (42%), Gaps = 16/121 (13%)

Query: 10  RNVSQEDADISLLRPR-TLEEFTGQVEACSNLKVFIE-------AAKARAEALDHVLFVG 61
            N+++   D S  +   T ++  G  E    LKV I+         K  A+    +LF G
Sbjct: 65  NNITEAKEDTSHRKTNITFKDVAGLDEVIDELKVIIDFMTNTEKYNKMGAKVPKGILFYG 124

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDR--DVLFIDE 113
           PPG GKT LA  +A E    F S SG    +      A  + AL    +     ++FIDE
Sbjct: 125 PPGTGKTLLATALAGETNSTFISASGSEFVEKYVGVGASRIRALFAKAKKSAPSIIFIDE 184

Query: 114 I 114
           I
Sbjct: 185 I 185


>gi|293375861|ref|ZP_06622127.1| ATP-dependent metallopeptidase HflB [Turicibacter sanguinis PC909]
 gi|325841821|ref|ZP_08167481.1| ATP-dependent metallopeptidase HflB [Turicibacter sp. HGF1]
 gi|292645506|gb|EFF63550.1| ATP-dependent metallopeptidase HflB [Turicibacter sanguinis PC909]
 gi|325489851|gb|EGC92203.1| ATP-dependent metallopeptidase HflB [Turicibacter sp. HGF1]
          Length = 677

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           +L VGPPG GKT LA+ VA E GV F S SG
Sbjct: 222 ILLVGPPGTGKTLLARAVAGEAGVPFYSISG 252


>gi|221633538|ref|YP_002522764.1| ATP-dependent protease La [Thermomicrobium roseum DSM 5159]
 gi|221155788|gb|ACM04915.1| ATP-dependent protease La [Thermomicrobium roseum DSM 5159]
          Length = 772

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 80/189 (42%), Gaps = 42/189 (22%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTS-GPVIAKA--------------GDLAALLT 101
           + FVGPPG+GKT+LA+ +A  LG  F + S G V  +A              G +   L 
Sbjct: 341 LCFVGPPGVGKTSLARSIAEALGRRFVTVSLGGVRDEAEIRGHRRTYLGAYPGRIVEALR 400

Query: 102 NLEDRD-VLFIDEIHRLSI--------IVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152
               R+ V+ +DE+ +L+          + E+L P      +D  +        V ++LS
Sbjct: 401 RAGTRNPVILLDELDKLATDYRGDPAAALLEVLDPEQNKQFVDHYL-------DVPVDLS 453

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR----------GAKLTGLA 202
               IA    +  L  PL+DR    I L  Y  E+ + I +R          G   T + 
Sbjct: 454 GVLFIATANSLAPLPRPLRDRLEA-IVLEGYSEEEKREIGKRYLLPRQLAAHGLPETAVE 512

Query: 203 VTDEAACEI 211
           +TD A  E+
Sbjct: 513 LTDSAWQEL 521


>gi|167754507|ref|ZP_02426634.1| hypothetical protein CLORAM_00008 [Clostridium ramosum DSM 1402]
 gi|167705339|gb|EDS19918.1| hypothetical protein CLORAM_00008 [Clostridium ramosum DSM 1402]
          Length = 413

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 58/114 (50%), Gaps = 11/114 (9%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP+ L++  GQ   V   + L  F++ +   +     ++  G PG GKTT+A  +A +L
Sbjct: 1   MRPQNLKDIIGQQHLVGPNAILTKFVQKSHPFS-----IILYGSPGCGKTTIAMALANDL 55

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLF--IDEIHRLSIIVEEILYPAME 130
            + +R  +     K  ++ A++   +    LF  IDE+HRL+   ++ L   ME
Sbjct: 56  DIPYRIFNASTGNKK-EMDAIIEEAKLSGSLFVIIDEVHRLNKARQDDLLSHME 108


>gi|156543233|ref|XP_001606546.1| PREDICTED: similar to ENSANGP00000022333 [Nasonia vitripennis]
          Length = 705

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL VGPPG GKT LA+ VA E GV F   +GP
Sbjct: 327 VLLVGPPGTGKTLLARAVAGEAGVPFFYAAGP 358


>gi|126465619|ref|YP_001040728.1| AAA family ATPase, CDC48 subfamily protein [Staphylothermus marinus
           F1]
 gi|126014442|gb|ABN69820.1| AAA family ATPase, CDC48 subfamily [Staphylothermus marinus F1]
          Length = 738

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT LA+ VA E G NF +  GP I
Sbjct: 500 ILLYGPPGTGKTLLAKAVATESGANFIAVRGPEI 533



 Score = 37.4 bits (85), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 8/77 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDR------DV 108
           +L  GPPG GKT LA+ VA E    F + +GP +I+K  G+    L  + ++       +
Sbjct: 227 ILLYGPPGTGKTLLAKAVANEAEAYFIAINGPEIISKFYGESEQRLREIFEQAKKNAPAI 286

Query: 109 LFIDEIHRLSIIVEEIL 125
           +FIDEI  ++   +E++
Sbjct: 287 IFIDEIDAIAPKRDEVM 303


>gi|189425579|ref|YP_001952756.1| ATP-dependent metalloprotease FtsH [Geobacter lovleyi SZ]
 gi|189421838|gb|ACD96236.1| ATP-dependent metalloprotease FtsH [Geobacter lovleyi SZ]
          Length = 635

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 194 VLLVGPPGTGKTLLARAVAGEAGVPFFSISG 224


>gi|160898087|ref|YP_001563669.1| ATP-dependent protease ATP-binding subunit ClpX [Delftia
           acidovorans SPH-1]
 gi|238687212|sp|A9C1U9|CLPX_DELAS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|160363671|gb|ABX35284.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Delftia
           acidovorans SPH-1]
          Length = 420

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+         
Sbjct: 113 AKSNILLIGPTGSGKTLLAQTLARMLNVPFVMADATTLTEAGYVGEDVENIIQKLLQSCE 172

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDEI ++S
Sbjct: 173 YDVERAQRGIVYIDEIDKIS 192


>gi|78185610|ref|YP_378044.1| peptidase M41, FtsH [Synechococcus sp. CC9902]
 gi|78169904|gb|ABB27001.1| FtsH peptidase homologue, chloroplast. Metallo peptidase. MEROPS
           family M41 [Synechococcus sp. CC9902]
          Length = 617

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 198 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 228


>gi|32474299|ref|NP_867293.1| DNA polymerase III gamma and tau subunits [Rhodopirellula baltica
           SH 1]
 gi|32444837|emb|CAD74839.1| DNA polymerase III gamma and tau subunits [Rhodopirellula baltica
           SH 1]
          Length = 676

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 105/260 (40%), Gaps = 45/260 (17%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPR   +  GQ      L+  IE ++     + H  LF G  G+GKT+ A++ A+ L   
Sbjct: 45  RPRDFTQLVGQDHVARALQGAIETSR-----VGHAYLFTGARGVGKTSTARIFAKALNHP 99

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
              T+ P      D+A  + + ED DV+ ID      I  +EI         L   VG  
Sbjct: 100 DGPTANP--DSESDVAQAIDSGEDVDVIEIDGASNRGI--DEIR-------SLRANVGVR 148

Query: 142 PSARSVKI----NLSRFTLIAATTRVGLLTNPLQ---------DRFGIPI-------RLN 181
           PS    KI     +   T  A    +  L  P +         D   IPI       R +
Sbjct: 149 PSRSRYKIYIIDEVHMLTGAAFNALLKTLEEPPEHVKFIFCTTDPEKIPITVLSRCQRFD 208

Query: 182 FYEIEDLKTIVQRGAKLTGL---AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE---- 234
           F  +E  K IVQR  ++       V DEA   +A R+ G+ R +  LL +V  F++    
Sbjct: 209 FAPVESDK-IVQRLREIVEAEDNTVEDEALELLARRAAGSMRDSQSLLEQVLSFSDGHLT 267

Query: 235 VAHAKTITREIADAALLRLA 254
             H  T+     D  L RLA
Sbjct: 268 ADHVHTMLGTADDQRLHRLA 287


>gi|71654812|ref|XP_816018.1| replication factor C, subunit 4 [Trypanosoma cruzi strain CL
          Brener]
 gi|70881118|gb|EAN94167.1| replication factor C, subunit 4, putative [Trypanosoma cruzi]
          Length = 340

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+++E+  G  +A S L+V      ++   L ++L  GPPG GKTT    +AR L
Sbjct: 13 RPKSMEDIVGNADAVSRLRVI-----SKEGNLPNLLLCGPPGTGKTTSVLCLARTL 63


>gi|303388375|ref|XP_003072422.1| DNA replication factor C small subunit [Encephalitozoon
           intestinalis ATCC 50506]
 gi|303301562|gb|ADM11062.1| DNA replication factor C small subunit [Encephalitozoon
           intestinalis ATCC 50506]
          Length = 284

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 8/110 (7%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA-RELGVN 81
           RP++++ F G      +LK  +  +  R     ++L  GPPG GKTT A ++A R+L +N
Sbjct: 8   RPKSVDTFEGP----EHLKSILRNSSERGHP--NLLLYGPPGTGKTTFAHLLATRKLELN 61

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
                G  + +   +    + LE    + +DE   L+   +  L   +ED
Sbjct: 62  ASDERGISVIRE-KIKVYASTLEKDKTVILDECENLTSDAQHCLRRVIED 110


>gi|300865379|ref|ZP_07110188.1| FtsH-2 peptidase [Oscillatoria sp. PCC 6506]
 gi|300336614|emb|CBN55338.1| FtsH-2 peptidase [Oscillatoria sp. PCC 6506]
          Length = 623

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 204 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 234


>gi|291335263|gb|ADD94882.1| FtsH peptidase [uncultured marine bacterium MedDCM-OCT-S09-C166]
          Length = 616

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 197 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 227


>gi|316935669|ref|YP_004110651.1| ATP-dependent metalloprotease FtsH [Rhodopseudomonas palustris
           DX-1]
 gi|315603383|gb|ADU45918.1| ATP-dependent metalloprotease FtsH [Rhodopseudomonas palustris
           DX-1]
          Length = 617

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           +L VGPPG GKT LA+ VA E GV F S SG    +   G  AA + +L ++       +
Sbjct: 193 ILLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEMFVGVGAARVRDLFEQARAKAPAI 252

Query: 109 LFIDEIHRL 117
           +FIDE+  L
Sbjct: 253 IFIDELDAL 261


>gi|317153550|ref|YP_004121598.1| ATP-dependent protease La [Desulfovibrio aespoeensis Aspo-2]
 gi|316943801|gb|ADU62852.1| ATP-dependent protease La [Desulfovibrio aespoeensis Aspo-2]
          Length = 821

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 82/193 (42%), Gaps = 50/193 (25%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           + FVGPPG+GKT++A+ +AR +   F R + G V  +A              G +   L 
Sbjct: 368 LCFVGPPGVGKTSIAKSIARSMDREFLRLSLGGVRDEAEIRGHRRTYVGAMPGKIIQSLK 427

Query: 102 NLEDRD-VLFIDEIHRL--------SIIVEEILYP----AMEDFQLDLMVGEGPSARSVK 148
            ++  + V+ +DE+ ++        S  + E+L P    A  D  LDL            
Sbjct: 428 RVKHNNPVICLDEVDKMSADFRGDPSAALLEVLDPEQNYAFNDHYLDL-----------D 476

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY-EIEDL---------KTIVQRGAKL 198
            +LS+   I     +  +  PLQDR  I IRL  Y E E +         K + Q G K 
Sbjct: 477 YDLSKVFFITTANNLDGIPLPLQDRMEI-IRLPGYLENEKVEIAKGFLVPKQLEQHGLKT 535

Query: 199 TGLAVTDEAACEI 211
             +  +D A  +I
Sbjct: 536 ENIKFSDNAILDI 548


>gi|225850666|ref|YP_002730900.1| ATPase, AAA family [Persephonella marina EX-H1]
 gi|225646314|gb|ACO04500.1| ATPase, AAA family [Persephonella marina EX-H1]
          Length = 309

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 74/159 (46%), Gaps = 24/159 (15%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNF---RSTSGPVIAKAGDLAALLTNLED------- 105
           H+L    PGLGKTTLA  +A+ LG+ F   + TS  +      L+    NLE        
Sbjct: 38  HLLVEDLPGLGKTTLAIGIAKTLGLQFGRIQCTSDLLPTDITGLSIYNKNLEKFEFHPGP 97

Query: 106 --RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
              +++ +DEI+R +   +  L  AM + Q+ L   EG + +  K     F +IA    V
Sbjct: 98  IFNNIVLVDEINRATPKTQSALLEAMAEKQVTL---EGETYKLPK----PFFVIATQNPV 150

Query: 164 GLL-TNPL----QDRFGIPIRLNFYEIEDLKTIVQRGAK 197
               T PL     DRF + I + +   E  K I++ G++
Sbjct: 151 EQFGTFPLPESQMDRFMMKISIGYPTREAEKEILKGGSR 189


>gi|307153545|ref|YP_003888929.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7822]
 gi|306983773|gb|ADN15654.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7822]
          Length = 624

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 52/104 (50%), Gaps = 15/104 (14%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAK--ARAEALDH-----VLFVGPPGLGKTTLAQVVAREL 78
           T E+  G  EA + L   +E  K   R +A+       VL VGPPG GKT LA+ VA E 
Sbjct: 165 TFEDVAGVEEAKTELAEIVEFLKNPQRYKAIGARIPRGVLLVGPPGTGKTLLAKAVAGEA 224

Query: 79  GVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEI 114
            V F S SG    +   G  AA + +L ++       ++FIDE+
Sbjct: 225 KVPFFSISGSEFVELFVGAGAARVRDLFEQAKKKAPCIIFIDEL 268


>gi|190409291|gb|EDV12556.1| AAA ATPase [Saccharomyces cerevisiae RM11-1a]
          Length = 1030

 Score = 41.6 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 4/48 (8%)

Query: 41  KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           ++F    K R+     +LF GPPG GKT +A+ +A    +NF S  GP
Sbjct: 756 ELFTSGMKKRS----GILFYGPPGTGKTLMAKAIATNFSLNFFSVKGP 799


>gi|190344505|gb|EDK36189.2| hypothetical protein PGUG_00287 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 380

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 32/66 (48%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--------AKAGDLAALLTNLEDRDV 108
           VLF GPPG GKT LA+ +A+E G  F S     I         K  D    L N     +
Sbjct: 162 VLFYGPPGCGKTMLAKAIAKESGAFFLSVRMSTIMDKWYGESNKIVDAIFSLANKLQPCI 221

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 222 IFIDEI 227


>gi|116072106|ref|ZP_01469374.1| Peptidase M41, FtsH [Synechococcus sp. BL107]
 gi|116065729|gb|EAU71487.1| Peptidase M41, FtsH [Synechococcus sp. BL107]
          Length = 617

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 198 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 228


>gi|327438072|dbj|BAK14437.1| ATP-dependent Zn protease [Solibacillus silvestris StLB046]
          Length = 679

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           +L VGPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 205 ILLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 264

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 265 IFIDEI 270


>gi|323335955|gb|EGA77232.1| Pex6p [Saccharomyces cerevisiae Vin13]
 gi|323346935|gb|EGA81213.1| Pex6p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 1030

 Score = 41.6 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 4/48 (8%)

Query: 41  KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           ++F    K R+     +LF GPPG GKT +A+ +A    +NF S  GP
Sbjct: 756 ELFTSGMKKRS----GILFYGPPGTGKTLMAKAIATNFSLNFFSVKGP 799


>gi|322701087|gb|EFY92838.1| peroxin-1, putative [Metarhizium acridum CQMa 102]
          Length = 1217

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 77/183 (42%), Gaps = 35/183 (19%)

Query: 57   VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
            +L  G PG GKT LA  VA E G+NF S  GP I     G     + +L DR       V
Sbjct: 871  LLLYGYPGCGKTLLASAVAGECGLNFISVKGPEILNKYIGASEKSVRDLFDRAQAAKPCV 930

Query: 109  LFIDEI--------HRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAAT 160
            LF DE         H  + + + ++   +   Q+D   G           LS   ++AAT
Sbjct: 931  LFFDEFDSIAPKRGHDSTGVTDRVVNQLLT--QMDGAEG-----------LSGVYVLAAT 977

Query: 161  TRVGLLTNPL--QDRFGIPIRLNFYEIED----LKTIVQRGAKLTGLAVTDEAACEIAMR 214
            +R  L+   L    R    +  +   +ED    +K + Q+    + L  +D+   EIA R
Sbjct: 978  SRPDLIDPALLRPGRLDKSLLCDLPSLEDRLDIIKALFQKVRLSSELTDSDDGLTEIARR 1037

Query: 215  SRG 217
            + G
Sbjct: 1038 TDG 1040


>gi|330921788|ref|XP_003299563.1| hypothetical protein PTT_10587 [Pyrenophora teres f. teres 0-1]
 gi|311326698|gb|EFQ92339.1| hypothetical protein PTT_10587 [Pyrenophora teres f. teres 0-1]
          Length = 418

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+TL E T Q      L   ++++      L H+LF GPPG GKT+    +A+EL
Sbjct: 40 RPKTLSEVTAQDNTIQILSRTMQSSN-----LPHMLFYGPPGTGKTSTILALAKEL 90


>gi|297526098|ref|YP_003668122.1| AAA family ATPase, CDC48 subfamily [Staphylothermus hellenicus DSM
           12710]
 gi|297255014|gb|ADI31223.1| AAA family ATPase, CDC48 subfamily [Staphylothermus hellenicus DSM
           12710]
          Length = 738

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT LA+ VA E G NF +  GP I
Sbjct: 500 ILLYGPPGTGKTLLAKAVATESGANFIAVRGPEI 533



 Score = 37.4 bits (85), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 8/77 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDR------DV 108
           +L  GPPG GKT LA+ VA E    F + +GP +I+K  G+    L  + ++       +
Sbjct: 227 ILLYGPPGTGKTLLAKAVANEAEAYFIAINGPEIISKFYGESEQRLREIFEQAKKNAPAI 286

Query: 109 LFIDEIHRLSIIVEEIL 125
           +FIDEI  ++   +E++
Sbjct: 287 IFIDEIDAIAPKRDEVM 303


>gi|256269459|gb|EEU04750.1| Pex6p [Saccharomyces cerevisiae JAY291]
 gi|259149044|emb|CAY82285.1| Pex6p [Saccharomyces cerevisiae EC1118]
          Length = 1030

 Score = 41.6 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 4/48 (8%)

Query: 41  KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           ++F    K R+     +LF GPPG GKT +A+ +A    +NF S  GP
Sbjct: 756 ELFTSGMKKRS----GILFYGPPGTGKTLMAKAIATNFSLNFFSVKGP 799


>gi|302878842|ref|YP_003847406.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Gallionella
           capsiferriformans ES-2]
 gi|302581631|gb|ADL55642.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Gallionella
           capsiferriformans ES-2]
          Length = 416

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD------------LAALL 100
           A  ++L VGP G GKT LAQ +AR L V F       + +AG             L A  
Sbjct: 109 AKSNILLVGPTGSGKTLLAQTLARMLDVPFVMADATTLTEAGYVGEDVENIIQKLLQACD 168

Query: 101 TNLE--DRDVLFIDEIHRLS 118
            N+E   R ++++DEI ++S
Sbjct: 169 YNVEKAQRGIIYVDEIDKIS 188


>gi|224031915|gb|ACN35033.1| unknown [Zea mays]
          Length = 463

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 8/96 (8%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
            L VGPPG GKT LA+ VA E GV F S +     +   G  A+ + +L ++       +
Sbjct: 57  CLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKAKAPCI 116

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSA 144
           +FIDEI  + +  +  L   +    +D+ V EG SA
Sbjct: 117 VFIDEIDAVVVPNDPDLIDILATNGVDISVSEGESA 152


>gi|146185105|ref|XP_001030952.2| ATP-dependent metalloprotease FtsH family protein [Tetrahymena
           thermophila]
 gi|146142708|gb|EAR83289.2| ATP-dependent metalloprotease FtsH family protein [Tetrahymena
           thermophila SB210]
          Length = 741

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 3/60 (5%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           EE T  V+   N K + +A    A+    +L VGPPG GKT LA+ +A E G +F   SG
Sbjct: 317 EELTELVDYLKNPKKYQDAG---AKLPKGILLVGPPGTGKTLLARALAGEAGCSFYYKSG 373


>gi|145353765|ref|XP_001421175.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|145357141|ref|XP_001422780.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|300681034|sp|A4S6Y4|LONM_OSTLU RecName: Full=Lon protease homolog, mitochondrial; Flags: Precursor
 gi|144581411|gb|ABO99468.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144583024|gb|ABP01139.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 936

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 96/222 (43%), Gaps = 46/222 (20%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDL------------AALLTNLE 104
           +  VGPPG+GKT++ Q +A+ LG  F   S   ++   ++              L+  L+
Sbjct: 503 ITMVGPPGVGKTSIGQSIAKALGRKFYRFSVGGMSDVAEIKGHRRTYVGAMPGKLIQCLK 562

Query: 105 D----RDVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152
                  V+ IDEI +L        +  + E+L P      LD  +        V ++LS
Sbjct: 563 STGVCNPVVLIDEIDKLGRGYQGDPASALLELLDPEQNGTFLDHYL-------DVPVDLS 615

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFY----EIEDLKTIVQRGAK-LTGLAVTDEA 207
           +   +     +  +  PL DR  + +RL+ Y    +++  +T +++ A+  +GL+  D +
Sbjct: 616 KVLFVCTANVLDTIPGPLLDRMEV-VRLSGYITDEKVQIARTYLEKAAREKSGLSDVDAS 674

Query: 208 ACEIAM--------RSRGTPRIAGRLLRRVRDFA-EVAHAKT 240
             + AM        R  G   +   L +  R  A +VA AK+
Sbjct: 675 ITDAAMGKLIGDYCREAGVRNLQKHLEKVYRKIALKVARAKS 716


>gi|83592886|ref|YP_426638.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodospirillum
           rubrum ATCC 11170]
 gi|123739541|sp|Q2RU44|CLPX_RHORT RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|83575800|gb|ABC22351.1| ClpX, ATPase regulatory subunit [Rhodospirillum rubrum ATCC 11170]
          Length = 422

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+         
Sbjct: 110 AKSNILLIGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASD 169

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDEI ++S
Sbjct: 170 YNVERAQRGIVYIDEIDKIS 189


>gi|162459318|ref|NP_001105903.1| lon protease homolog 2, peroxisomal precursor [Zea mays]
 gi|3914005|sp|P93647|LONP2_MAIZE RecName: Full=Lon protease homolog 2, peroxisomal
 gi|1816586|gb|AAC50011.1| LON1 protease [Zea mays]
          Length = 885

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 99/231 (42%), Gaps = 47/231 (20%)

Query: 10  RNVSQE-DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGK 67
           + VS+E + D+ + +    ++  G  +    +  ++   K + +A   VL FVGPPG+GK
Sbjct: 356 QKVSEERELDLRVAKESLDQDHYGLTKVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGK 415

Query: 68  TTLAQVVARELGVNF-RSTSGPVIAKA----------GDLAALLTNLEDR-----DVLFI 111
           T+LA  +A+ L   F R + G V  +A          G +   L +   R      V+ +
Sbjct: 416 TSLASSIAKALNRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVSVSNPVMLL 475

Query: 112 DEIHRLSIIVE--------EILYP----AMEDFQLDLMVGEGPSARSVKINLSRFTLIAA 159
           DEI +    V         E+L P    A  D  L+           V  +LS+   +A 
Sbjct: 476 DEIDKTGSDVRGDPASALLEVLDPEQNKAFNDHYLN-----------VPFDLSKVIFVAT 524

Query: 160 TTRVGLLTNPLQDRFGIPIRLNFYEIED-----LKTIVQRGAKLTGLAVTD 205
             R+  +  PL DR  I I L  Y  E+     +K ++ R  +  GL+ T+
Sbjct: 525 ANRMQPIPPPLLDRMEI-IELPGYTPEEKLKIAMKHLIPRVLEQHGLSTTN 574


>gi|332970862|gb|EGK09840.1| ATP-dependent Clp protease ATP-binding subunit [Kingella kingae
           ATCC 23330]
          Length = 422

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           +VL +GP G GKT + Q +AR L V F       + +AG    D+ +++T L        
Sbjct: 114 NVLMIGPTGSGKTYMVQSLARHLNVPFAMADATTLTEAGYVGEDVESIVTKLLGNCDFDV 173

Query: 104 --EDRDVLFIDEIHRLS 118
               + +++IDEI ++S
Sbjct: 174 EKAQKGIIYIDEIDKIS 190


>gi|320101637|ref|YP_004177228.1| membrane protease FtsH catalytic subunit [Isosphaera pallida ATCC
           43644]
 gi|319748919|gb|ADV60679.1| membrane protease FtsH catalytic subunit [Isosphaera pallida ATCC
           43644]
          Length = 712

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F S SG       V   A  +  +    ++    +
Sbjct: 258 VLLVGPPGSGKTLLARAVAGEAGVPFFSISGSEFIQMFVGVGASRVRDMFKTAKENSPCI 317

Query: 109 LFIDEI 114
           LFIDEI
Sbjct: 318 LFIDEI 323


>gi|304314452|ref|YP_003849599.1| replication factor C, small subunit [Methanothermobacter
          marburgensis str. Marburg]
 gi|302587911|gb|ADL58286.1| replication factor C, small subunit [Methanothermobacter
          marburgensis str. Marburg]
          Length = 317

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 6/64 (9%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE-LGVN 81
          RP+ L++  GQ      LK ++E       ++ +++F GP G+GKTT A  +ARE LG  
Sbjct: 10 RPQKLDDIVGQEHIIPRLKRYVEE-----RSMPNLMFTGPAGVGKTTTALALAREILGEY 64

Query: 82 FRST 85
          +R  
Sbjct: 65 WRQN 68


>gi|296242479|ref|YP_003649966.1| ATPase [Thermosphaera aggregans DSM 11486]
 gi|296095063|gb|ADG91014.1| ATPase associated with various cellular activities AAA_3
           [Thermosphaera aggregans DSM 11486]
          Length = 318

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 91/222 (40%), Gaps = 38/222 (17%)

Query: 44  IEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG-PVIAKAGDLAALLTN 102
           ++ A A   A  H+L  G PG GKT LA+ +A+ +G  +    G P I  +  L   +  
Sbjct: 33  VKLAVATLFANGHLLIEGYPGTGKTLLAKALAKTIGGEYSRIQGHPDILPSDILGFHIYR 92

Query: 103 LED----------RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152
           LE            ++L IDE++R+    +  L  AM+++Q+ +          VK +L 
Sbjct: 93  LEGSKEFVRGPVFSNILLIDELNRIPTRSQSALLEAMQEYQVTI--------DGVKYSLP 144

Query: 153 R-FTLIAATTRVGLLTNPLQ------DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTD 205
           R F +I     V L T   Q      DRF             +K+      +   +    
Sbjct: 145 RPFMVIGTQISVRLGTGVYQVMETLADRFA----------SSVKSYYNPIEEEEEIIAKS 194

Query: 206 EAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           ++  E+ +    TPR    ++  +++   V   +TI R IA 
Sbjct: 195 DSIIELPINQVVTPRELSLVISSIQNLVHV--DETIIRYIAS 234


>gi|237785949|ref|YP_002906654.1| ATP-dependent Clp protease, ATP-binding subunit [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|259491254|sp|C4LJV6|CLPX_CORK4 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|237758861|gb|ACR18111.1| ATP-dependent Clp protease, ATP-binding subunit [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 422

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L +GP G GKT LAQ +AR L V F  T    + +AG +   + N+         
Sbjct: 114 AKSNILMLGPTGSGKTYLAQTLARMLDVPFAMTDATSLTEAGYVGEDVENILLKLLQAAD 173

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDE+ ++S
Sbjct: 174 FDVDRAQRGIIYIDEVDKIS 193


>gi|271963125|ref|YP_003337321.1| hypothetical protein Sros_1585 [Streptosporangium roseum DSM 43021]
 gi|270506300|gb|ACZ84578.1| conserved hypothetical protein [Streptosporangium roseum DSM 43021]
          Length = 1726

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 3/73 (4%)

Query: 50   RAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVL 109
            R + +  +L + PPG GKTTL + VA  LG+ F    GP +   G L   L   +  D  
Sbjct: 1355 RTDQMGMLLLISPPGYGKTTLMEYVASRLGLIFVKVDGPAL---GHLVTSLDPAQAPDAT 1411

Query: 110  FIDEIHRLSIIVE 122
               E+ ++S  +E
Sbjct: 1412 SRQEVEKISFALE 1424


>gi|159035922|ref|YP_001535175.1| DNA polymerase III, subunits gamma and tau [Salinispora arenicola
           CNS-205]
 gi|157914757|gb|ABV96184.1| DNA polymerase III, subunits gamma and tau [Salinispora arenicola
           CNS-205]
          Length = 834

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 42/92 (45%), Gaps = 8/92 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPRT  E  GQ      L   + + +     L+H  LF GP G GKT+ A+++AR L   
Sbjct: 10  RPRTFAEIIGQEHVTEPLSQALRSGR-----LNHAYLFSGPRGCGKTSSARILARSLNCE 64

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR-DVLFID 112
              T  P     G   AL T+     DV+ ID
Sbjct: 65  HGPTPEPC-GTCGSCRALATDGAGSIDVIEID 95


>gi|115374874|ref|ZP_01462147.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Stigmatella
           aurantiaca DW4/3-1]
 gi|115368092|gb|EAU67054.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Stigmatella
           aurantiaca DW4/3-1]
          Length = 400

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 57/133 (42%), Gaps = 29/133 (21%)

Query: 15  EDADISLLRPRTL-----EEFTGQVEACSNLKVFIEAAKARAEAL----------DHVLF 59
           +D  I + RP  +     E   GQ  A   L V +     R E+            ++L 
Sbjct: 34  KDTKIRIPRPSEIKSILDEYVVGQDRAKKVLSVAVHNHYKRIESKVQMDDVELQKSNILL 93

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL----------ED 105
           +GP G GKT LAQ +AR L V F       + +AG    D+  ++ NL            
Sbjct: 94  LGPTGSGKTLLAQTLARILNVPFTIADATCLTEAGYVGEDVENIIVNLLQAADHDIERAQ 153

Query: 106 RDVLFIDEIHRLS 118
           R +++IDEI +++
Sbjct: 154 RGIVYIDEIDKIA 166


>gi|94266501|ref|ZP_01290191.1| Peptidase S16, ATP-dependent protease La [delta proteobacterium
           MLMS-1]
 gi|93452888|gb|EAT03402.1| Peptidase S16, ATP-dependent protease La [delta proteobacterium
           MLMS-1]
          Length = 827

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 16/26 (61%), Positives = 21/26 (80%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF 82
           + FVGPPG+GKT+L Q +AR +G NF
Sbjct: 402 LCFVGPPGVGKTSLGQSIARSMGRNF 427


>gi|16120141|ref|NP_395729.1| cell division cycle protein [Halobacterium sp. NRC-1]
 gi|169237400|ref|YP_001690604.1| AAA-type ATPase (transitional ATPase homolog) [Halobacterium
           salinarum R1]
 gi|10584255|gb|AAG20864.1| cell division cycle protein [Halobacterium sp. NRC-1]
 gi|167728627|emb|CAP15469.1| AAA-type ATPase (transitional ATPase homolog) [Halobacterium
           salinarum R1]
          Length = 737

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 24/34 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL  GPPG GKT +A+ VA E+  +F++ SGP I
Sbjct: 230 VLLHGPPGTGKTLIAKAVANEIDAHFQTISGPEI 263



 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 26/48 (54%), Gaps = 7/48 (14%)

Query: 41  KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +V +E AK        VL  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 494 QVALEPAKG-------VLLYGPPGTGKTLLAKAVANEANSNFISIKGP 534


>gi|330939988|gb|EGH43188.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae
          pv. pisi str. 1704B]
          Length = 127

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 6/69 (8%)

Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGV 80
           RPR+  E  GQ      LK  I A  +  + L H  LF G  G+GKTT+A+++A+ L  
Sbjct: 10 WRPRSFREMVGQAHV---LKALISALDS--QRLHHAYLFTGTRGVGKTTIARIIAKCLNC 64

Query: 81 NFRSTSGPV 89
              TS P 
Sbjct: 65 ETGITSTPC 73


>gi|308322419|gb|ADO28347.1| 26S protease regulatory subunit s10b [Ictalurus furcatus]
          Length = 389

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 55/123 (44%), Gaps = 21/123 (17%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV--------LF 59
           L  N+S ED  I      +  E  G  E    L+  IE      E    V        L 
Sbjct: 118 LVYNMSHEDPGIV-----SYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLL 172

Query: 60  VGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA-GDLAALLTNLED--RD----VLFI 111
            GPPG GKT LA+ VA +L  NF +  S  ++ K  G+ A L+  + +  RD    ++F+
Sbjct: 173 YGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFM 232

Query: 112 DEI 114
           DEI
Sbjct: 233 DEI 235


>gi|260833506|ref|XP_002611698.1| hypothetical protein BRAFLDRAFT_117082 [Branchiostoma floridae]
 gi|229297069|gb|EEN67708.1| hypothetical protein BRAFLDRAFT_117082 [Branchiostoma floridae]
          Length = 859

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 13/69 (18%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAKAGDLAALLTNLEDRDVLFIDEIH 115
           VL  GPPG GKT +A+V+A E+G  F + +GP V++K               ++FIDE+ 
Sbjct: 379 VLLFGPPGTGKTMVARVLAAEIGATFITINGPEVLSKT------------PSIIFIDELD 426

Query: 116 RLSIIVEEI 124
            L    E +
Sbjct: 427 ALCPKRENV 435



 Score = 37.0 bits (84), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 15/32 (46%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG  KT +A+ +A E G+NF +  GP
Sbjct: 630 ILMYGPPGCSKTLIARALATESGLNFIAVKGP 661


>gi|154272872|ref|XP_001537288.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150415800|gb|EDN11144.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 450

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 58/112 (51%), Gaps = 11/112 (9%)

Query: 23  RPRTLEEFT---GQVE-ACSNLKVFIEAAKARAEA----LDHVLFVGPPGLGKTTLAQVV 74
           R R+LE  +   GQ E  C+++  F++A +  A+         LF GPPG GKT+L Q +
Sbjct: 275 RRRSLESISLAEGQKEEVCNDMCKFLKAQRVYAKTERPYRRGYLFSGPPGTGKTSLVQAL 334

Query: 75  ARELGVNFR--STSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           A + G++    S +G  +    +L  L ++L    VL I++I    I  E++
Sbjct: 335 AGKYGLDIYMLSLTGQNMTDE-ELQWLCSHLPRHCVLLIEDIDSAGINREKM 385


>gi|27381285|ref|NP_772814.1| ATP-dependent protease LA [Bradyrhizobium japonicum USDA 110]
 gi|27354452|dbj|BAC51439.1| ATP-dependent protease LA [Bradyrhizobium japonicum USDA 110]
          Length = 796

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 74/173 (42%), Gaps = 35/173 (20%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           + FVGPPG+GKT+L Q +AR +   F R + G V  +A              G++   + 
Sbjct: 366 LCFVGPPGVGKTSLGQSIARAMDRPFVRVSLGGVHDEAEIRGHRRTYIGALPGNIIQGIK 425

Query: 102 NLEDRD-VLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152
               R+ V+ +DEI ++        S  + E+L P       D  +G       V  +LS
Sbjct: 426 KAGSRNCVMMLDEIDKMGRGVQGDPSAAMLEVLDPEQNGTFRDNYLG-------VPFDLS 478

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL----KTIVQRGAKLTGL 201
           R   IA    +  +  PL DR  +     + E E L    + +V+R  +  GL
Sbjct: 479 RVVFIATANMLDQIPGPLLDRMELISLAGYTEDEKLEIAKRYLVRRQLEANGL 531


>gi|328876170|gb|EGG24533.1| AAA ATPase domain-containing protein [Dictyostelium fasciculatum]
          Length = 918

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 628 VLMYGPPGCGKTLLAKAVAAECQANFISVKGP 659



 Score = 38.9 bits (89), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL------EDRDV 108
           +L  GPPG GKT LA  +A EL V   S S P I    +G+  A +  L      +   +
Sbjct: 293 ILLHGPPGCGKTLLANCIAGELKVPLISISAPEITSGMSGESEAKIRQLFASAVEQSPCI 352

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 353 VFIDEI 358


>gi|313207085|ref|YP_004046262.1| AAA ATPase [Riemerella anatipestifer DSM 15868]
 gi|312446401|gb|ADQ82756.1| AAA ATPase [Riemerella anatipestifer DSM 15868]
 gi|315022517|gb|EFT35544.1| ATPase [Riemerella anatipestifer RA-YM]
 gi|325335478|gb|ADZ11752.1| ATPase, AAA+ type, core [Riemerella anatipestifer RA-GD]
          Length = 1603

 Score = 41.2 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 26/44 (59%)

Query: 48   KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA 91
            + R + +  +L V PPG GKTTL + VA  +G+ F   +GP I 
Sbjct: 1236 QKRTDRMGMLLLVSPPGYGKTTLIEYVADRMGLVFMKINGPAIG 1279


>gi|242095208|ref|XP_002438094.1| hypothetical protein SORBIDRAFT_10g007950 [Sorghum bicolor]
 gi|241916317|gb|EER89461.1| hypothetical protein SORBIDRAFT_10g007950 [Sorghum bicolor]
          Length = 319

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           +L  GPPG GKT LA+ +A E G NF S +G  +     GD   L  +L          +
Sbjct: 66  ILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKSLFSFASRLAPVI 125

Query: 109 LFIDEIHRL 117
           +F+DE+  L
Sbjct: 126 IFVDEVDSL 134


>gi|227533051|ref|ZP_03963100.1| M41 family endopeptidase FtsH [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|227189452|gb|EEI69519.1| M41 family endopeptidase FtsH [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
          Length = 715

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           VL  GPPG GKT LA+ VA E GV F S SG    +   G  A+ + +L D+       +
Sbjct: 225 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFDQAKKAAPSI 284

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 285 IFIDEI 290


>gi|160894379|ref|ZP_02075156.1| hypothetical protein CLOL250_01932 [Clostridium sp. L2-50]
 gi|156864080|gb|EDO57511.1| hypothetical protein CLOL250_01932 [Clostridium sp. L2-50]
          Length = 605

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 47/103 (45%), Gaps = 15/103 (14%)

Query: 27  LEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVARELG 79
             +  G+ EA  NL   ++     A+  D        VL VGPPG GKT LA+ VA E  
Sbjct: 164 FSDVAGEDEAKENLAEIVDYLHNPAKYTDVGALMPKGVLLVGPPGTGKTMLAKAVAGESN 223

Query: 80  VNFRSTSGPVIAK------AGDLAALLTNLEDRD--VLFIDEI 114
           V F S SG    +      A  +  L    +++   ++FIDEI
Sbjct: 224 VPFFSMSGSEFVEMFVGMGASKVRDLFKQAKEKAPCIVFIDEI 266


>gi|167035355|ref|YP_001670586.1| ATP-dependent protease La [Pseudomonas putida GB-1]
 gi|166861843|gb|ABZ00251.1| ATP-dependent protease La [Pseudomonas putida GB-1]
          Length = 805

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 70/166 (42%), Gaps = 40/166 (24%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAKAGDLAALLT 101
           VL VGPPG+GKT++ + +A  LG  F   S                 + A+ G L   L 
Sbjct: 387 VLLVGPPGVGKTSIGKSIAESLGRPFYRFSVGGMRDEAEIKGHRRTYIGAQPGKLVQALK 446

Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAME----DFQLDLMVGEGPSARSVK 148
           ++E  + V+ +DEI ++    +        E L P       D  LDL           +
Sbjct: 447 DVEVMNPVIMLDEIDKMGQSYQGDPASALLETLDPEQNVDFLDHYLDL-----------R 495

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           ++LS+   +     +  +  PL DR  + IRL+ Y  E+   I +R
Sbjct: 496 LDLSKVLFVCTANTLDSIPGPLLDRMEV-IRLSGYITEEKLAIAKR 540


>gi|118593590|ref|ZP_01550967.1| ATP-dependent metalloprotease FtsH [Stappia aggregata IAM 12614]
 gi|118433808|gb|EAV40468.1| ATP-dependent metalloprotease FtsH [Stappia aggregata IAM 12614]
          Length = 608

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           +L VGPPG GKT LA+ VA E GV F S SG    +   G  AA + +L ++       +
Sbjct: 193 ILLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEMFVGVGAARVRDLFEQARKAAPAI 252

Query: 109 LFIDEIHRL 117
           +FIDE+  L
Sbjct: 253 IFIDELDAL 261


>gi|114569889|ref|YP_756569.1| ATP-dependent protease ATP-binding subunit ClpX [Maricaulis maris
           MCS10]
 gi|122316140|sp|Q0AQ06|CLPX_MARMM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|114340351|gb|ABI65631.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Maricaulis
           maris MCS10]
          Length = 423

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+         
Sbjct: 112 AKSNILLIGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIVLKLLQAAD 171

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDEI ++S
Sbjct: 172 YNVERAQRGIVYIDEIDKIS 191


>gi|120401100|ref|YP_950929.1| ATPase central domain-containing protein [Mycobacterium vanbaalenii
           PYR-1]
 gi|119953918|gb|ABM10923.1| AAA ATPase, central domain protein [Mycobacterium vanbaalenii
           PYR-1]
          Length = 574

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 98/233 (42%), Gaps = 42/233 (18%)

Query: 4   REGLLSRNVSQEDADISLLRPR-TLEEF-----TGQVEACSNLKVFIEAAKARAEALDHV 57
           RE LL+   ++ D  I L R +  +E +       +V A   +KV        A+A  H+
Sbjct: 280 REMLLADAQAELDRQIGLTRVKDQIERYRAATQMAKVRAARGMKV--------AQASKHM 331

Query: 58  LFVGPPGLGKTTLAQVVAR---ELGV----NFRSTSGP--VIAKAGDLAALLTNLEDR-- 106
           +F GPPG GKTT+A+VVA     LGV        TS    V    G  A       DR  
Sbjct: 332 IFTGPPGTGKTTIARVVANILAGLGVIAEPKLVETSRKDFVAEYEGQSAVKTARTIDRAM 391

Query: 107 -DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSR---FTLIAATT- 161
             VLFIDE + L   V+E       D + D    E       ++   R     +IA  + 
Sbjct: 392 GGVLFIDEAYTL---VQE------RDGRADPFGTEALDTLLARMENDRDRLVVIIAGYSN 442

Query: 162 ---RVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEI 211
              R+    + L+ RF   I  + Y  E++  I +  A     ++TDEAA  +
Sbjct: 443 DIDRLLETNDGLRSRFSTRIEFDSYSPEEIVDIARVIAAHNDSSLTDEAAKRV 495


>gi|71907346|ref|YP_284933.1| Lon-A peptidase [Dechloromonas aromatica RCB]
 gi|71846967|gb|AAZ46463.1| ATP-dependent proteinase, Serine peptidase, MEROPS family S16
           [Dechloromonas aromatica RCB]
          Length = 804

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 70/274 (25%), Positives = 111/274 (40%), Gaps = 64/274 (23%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           +  VGPPG+GKT+L Q +A+     F R   G V  +A              G + + LT
Sbjct: 353 LCLVGPPGVGKTSLGQSIAKATNRKFVRMALGGVRDEAEIRGHRRTYIGSMPGKILSSLT 412

Query: 102 NLEDRDVLF-IDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152
            +  R+ LF +DE+ +L        S  + E+L P       D  V        V  +LS
Sbjct: 413 KVGVRNPLFLLDEVDKLGQDFRGDPSSALLEVLDPEQNHTFQDHYV-------EVDFDLS 465

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFY-EIEDL---------KTIVQRGAKLTGLA 202
               +A    +  +  PL DR  + IRL+ Y E E +         K I   G K T +A
Sbjct: 466 DVMFVATANTLN-IPAPLLDRMEV-IRLSGYTEDEKVNIAMRYLLPKQIKNNGLKKTEIA 523

Query: 203 VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQ 262
           V D A  +I                 VR +   A  + + REI  + + R  +  +   +
Sbjct: 524 VADSAVRDI-----------------VRYYTREAGVRALEREI--SKICRKVVKTLVLKK 564

Query: 263 LDLRYLTMIARNFGGGPVGIETISAGLSEPRDAI 296
            D + L   A+N     +G++  S G++E  + +
Sbjct: 565 RDSKILVN-AKNLDKF-LGVQRYSYGMAEKENQV 596


>gi|330950049|gb|EGH50309.1| peptidase S16, ATP-dependent protease La [Pseudomonas syringae Cit
           7]
          Length = 805

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 87/215 (40%), Gaps = 53/215 (24%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAKAGDLAALLT 101
           VL VGPPG+GKT++ + +A  LG  F   S                 + A+ G L   L 
Sbjct: 387 VLLVGPPGVGKTSVGRSIAESLGRPFYRLSVGGMRDEAEIKGHRRTYIGAQPGKLVQALK 446

Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAME----DFQLDLMVGEGPSARSVK 148
           ++E  + V+ +DEI ++    +        E L P       D  LDL           +
Sbjct: 447 DVEVMNPVIMLDEIDKMGQSYQGDPASALLETLDPEQNVEFLDHYLDL-----------R 495

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR----------GAKL 198
           ++LS+   +     +  +  PL DR  + IRL+ Y  E+   I +R          G   
Sbjct: 496 LDLSKVLFVCTANTLDSIPGPLLDRMEV-IRLSGYITEEKLAIAKRHLWPKQLEKAGVAK 554

Query: 199 TGLAVTDE---AACEIAMRSRGTPRIAGRLLRRVR 230
           + L+++D    A  E   R  G   +  +L + VR
Sbjct: 555 SKLSISDSALRAVIEGYAREAGVRHLEKQLGKLVR 589


>gi|319949375|ref|ZP_08023444.1| ATP-dependent protease FtsH [Dietzia cinnamea P4]
 gi|319436958|gb|EFV92009.1| ATP-dependent protease FtsH [Dietzia cinnamea P4]
          Length = 738

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 33/59 (55%), Gaps = 6/59 (10%)

Query: 34  VEACSNLKVFIEAAKARAEALD-----HVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VE  + +K F++   AR E L       VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 179 VEELNEIKDFLQN-PARYERLGAKIPRGVLLYGPPGTGKTLLARAVAGEAGVPFYSISG 236


>gi|303229430|ref|ZP_07316220.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Veillonella
           atypica ACS-134-V-Col7a]
 gi|302515966|gb|EFL57918.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Veillonella
           atypica ACS-134-V-Col7a]
          Length = 417

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           +VLF+GP G GKT LAQ +A+ L V F       + +AG    D+  +L  L        
Sbjct: 110 NVLFIGPTGSGKTLLAQTLAKMLEVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDI 169

Query: 104 --EDRDVLFIDEIHRLS 118
              +R +++IDEI +++
Sbjct: 170 ERAERGIIYIDEIDKIA 186


>gi|302792154|ref|XP_002977843.1| hypothetical protein SELMODRAFT_268097 [Selaginella moellendorffii]
 gi|300154546|gb|EFJ21181.1| hypothetical protein SELMODRAFT_268097 [Selaginella moellendorffii]
          Length = 789

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 8/71 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ VA  +  NF +  GP +     G+    +  + D+       V
Sbjct: 510 VLFYGPPGCGKTLLAKAVATMIHCNFITIKGPELLSKYLGESEGNVREVFDKARASAPCV 569

Query: 109 LFIDEIHRLSI 119
           LF DE+  ++I
Sbjct: 570 LFFDELDSIAI 580



 Score = 38.1 bits (87), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT +A+ VA E G  F   +GP I
Sbjct: 237 ILLFGPPGTGKTMIARAVANETGAFFTVINGPEI 270


>gi|258649122|ref|ZP_05736591.1| DNA polymerase III, gamma and tau subunit [Prevotella tannerae ATCC
           51259]
 gi|260850774|gb|EEX70643.1| DNA polymerase III, gamma and tau subunit [Prevotella tannerae ATCC
           51259]
          Length = 594

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 93/253 (36%), Gaps = 58/253 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELG-- 79
           RP   ++  GQ    + LK  I A K     L H  LF GP G+GKTT A++ A+ +   
Sbjct: 12  RPTNFDDVVGQHALTTTLKNAIAAGK-----LAHAYLFCGPRGVGKTTCARIFAKTINCL 66

Query: 80  -----------------------VNFRSTSGPVIAKAGDLAAL------LTNLEDRDVLF 110
                                  +N           A D+ AL      L  +    V  
Sbjct: 67  HPGPGGEACGECESCQAFQAGRSLNVHELDAASNNSAEDIRALIEQVNILPQMGRYKVFI 126

Query: 111 IDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           IDE+H LS          +E+          P A ++         I ATT    L   +
Sbjct: 127 IDEVHMLSTAAANAFLKTLEE----------PPAHAI--------FILATTEKQKLLPTI 168

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
             R  I    N  E+ D+   ++R A+   +   + A   IA ++ G  R A  +  +V 
Sbjct: 169 LSRCQI-YDFNRMEVNDIVHHLKRVAEDQHIQYEEAALNVIAQKADGGMRDALSIFDQVA 227

Query: 231 DFAE--VAHAKTI 241
            FAE  + +AK I
Sbjct: 228 GFAEGNLTYAKVI 240


>gi|221061149|ref|XP_002262144.1| ATPase [Plasmodium knowlesi strain H]
 gi|193811294|emb|CAQ42022.1| ATPase, putative [Plasmodium knowlesi strain H]
          Length = 964

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT LA+ ++ E+  NF +  GP I
Sbjct: 603 ILLYGPPGCGKTMLAKAISNEMKANFIAIKGPEI 636


>gi|167769422|ref|ZP_02441475.1| hypothetical protein ANACOL_00752 [Anaerotruncus colihominis DSM
           17241]
 gi|167668390|gb|EDS12520.1| hypothetical protein ANACOL_00752 [Anaerotruncus colihominis DSM
           17241]
          Length = 465

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDV 108
           +VL +GP G+GKT LAQ +AR L V F       + +AG +   + N+        D DV
Sbjct: 144 NVLLLGPTGVGKTLLAQTLARMLNVPFAIADATTLTEAGYVGEDVENILLRLLQAADYDV 203

Query: 109 -------LFIDEIHRLS 118
                  ++IDEI ++S
Sbjct: 204 ERAQKGIIYIDEIDKIS 220


>gi|94263344|ref|ZP_01287159.1| Peptidase S16, ATP-dependent protease La [delta proteobacterium
           MLMS-1]
 gi|93456299|gb|EAT06429.1| Peptidase S16, ATP-dependent protease La [delta proteobacterium
           MLMS-1]
          Length = 827

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 16/26 (61%), Positives = 21/26 (80%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF 82
           + FVGPPG+GKT+L Q +AR +G NF
Sbjct: 402 LCFVGPPGVGKTSLGQSIARSMGRNF 427


>gi|58040097|ref|YP_192061.1| recombination factor protein RarA [Gluconobacter oxydans 621H]
 gi|58002511|gb|AAW61405.1| ATPase associated with chromosome architecture/replication
           [Gluconobacter oxydans 621H]
          Length = 470

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 16/119 (13%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           LRP+ LE+  GQ   +     L   +E        L  ++  G PG GKTT+A+++A   
Sbjct: 57  LRPKRLEDVRGQDHLLGPEGTLTRMLERG-----TLSSLILWGGPGCGKTTIARLLAGRA 111

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLSIIVEEILYPAME 130
           G+ F S    V +   DL       + +        +LF+DEIHR +   ++   P +E
Sbjct: 112 GL-FYSQISAVFSGVADLRRAFEEADKKQAATGKGTLLFVDEIHRFNRAQQDGFLPYVE 169


>gi|67521818|ref|XP_658970.1| hypothetical protein AN1366.2 [Aspergillus nidulans FGSC A4]
 gi|40746393|gb|EAA65549.1| hypothetical protein AN1366.2 [Aspergillus nidulans FGSC A4]
          Length = 628

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDL-AALLTNLEDRD-----V 108
           VL  GPPG GKT +A   A ELGV F S S P I    +G+   AL  + E+       +
Sbjct: 101 VLLHGPPGCGKTMIANAFAAELGVPFISISAPSIVSGMSGESEKALREHFEEAKRLAPCL 160

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 161 IFIDEIDAIT 170



 Score = 40.0 bits (92), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 405 VLLWGPPGCGKTLLAKAVANESRANFISVKGP 436


>gi|332030728|gb|EGI70404.1| Paraplegin [Acromyrmex echinatior]
          Length = 725

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAKAGDLAA-----LLTNLEDR--DV 108
           VL +GPPG GKT LA+ VA E  V F S +G   I   G L A     L    E R   +
Sbjct: 293 VLLLGPPGCGKTLLAKAVATEASVPFLSMNGSEFIEVFGGLGAARVRHLFKEAEKRAPSI 352

Query: 109 LFIDEI 114
           ++IDEI
Sbjct: 353 IYIDEI 358


>gi|328545133|ref|YP_004305242.1| ATP-dependent metallopeptidase HflB subfamily [polymorphum gilvum
           SL003B-26A1]
 gi|326414875|gb|ADZ71938.1| ATP-dependent metallopeptidase HflB subfamily [Polymorphum gilvum
           SL003B-26A1]
          Length = 604

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           +L VGPPG GKT LA+ VA E GV F S SG    +   G  AA + +L ++       +
Sbjct: 192 ILLVGPPGTGKTLLARAVAGEAGVAFFSISGSEFVEMFVGVGAARVRDLFEQARKAAPAI 251

Query: 109 LFIDEIHRL 117
           +FIDE+  L
Sbjct: 252 IFIDELDAL 260


>gi|318061596|ref|ZP_07980317.1| cell division protein ftsH-like protein [Streptomyces sp. SA3_actG]
 gi|318077180|ref|ZP_07984512.1| cell division protein ftsH-like protein [Streptomyces sp. SA3_actF]
          Length = 684

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 72/255 (28%), Positives = 113/255 (44%), Gaps = 53/255 (20%)

Query: 34  VEACSNLKVFI-EAAKARA---EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPV 89
           VE    +K F+ E AK +A   +    VL  GPPG GKT LA+ VA E GV F S SG  
Sbjct: 182 VEELQEIKEFLQEPAKFQAVGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSD 241

Query: 90  IAK--AGDLAALLTNLEDR------DVLFIDEI-----HRLSIIVEEILYPAMEDFQLDL 136
             +   G  A+ + +L ++       ++F+DEI     HR + +                
Sbjct: 242 FVEMFVGVGASRVRDLFEQAKANAPAIVFVDEIDAVGRHRGAGL---------------- 285

Query: 137 MVGEGPSARSVKIN-----LSRFT------LIAATTRVGLLTNPL--QDRFGIPIRLNFY 183
             G G   R   +N     +  F       LIAAT R  +L   L    RF   I ++  
Sbjct: 286 --GGGHDEREQTLNQLLVEMDGFDVKGGVILIAATNRPDILDPALLRPGRFDRQIAVDRP 343

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           +++    I++    + G  VTD    ++A  +R TP   G  L  V + A +  A++  +
Sbjct: 344 DMQGRLEILK--VHVQGKPVTD--GVDLAAVARRTPGFTGADLANVLNEAALLTARS-DK 398

Query: 244 EIADAALLRLAIDKM 258
           ++ D ++L  AID++
Sbjct: 399 KLIDNSMLDEAIDRV 413


>gi|302342889|ref|YP_003807418.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfarculus
           baarsii DSM 2075]
 gi|301639502|gb|ADK84824.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfarculus
           baarsii DSM 2075]
          Length = 417

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +AR + V F       + +AG    D+  ++ NL        
Sbjct: 112 NILLIGPTGCGKTLLAQTLARIINVPFTIADATTLTEAGYVGEDVENIILNLLQAADYDV 171

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI +++
Sbjct: 172 ERAQRGIVYIDEIDKIA 188


>gi|282878237|ref|ZP_06287033.1| ATP-dependent metallopeptidase HflB [Prevotella buccalis ATCC
           35310]
 gi|281299655|gb|EFA92028.1| ATP-dependent metallopeptidase HflB [Prevotella buccalis ATCC
           35310]
          Length = 677

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 35/65 (53%), Gaps = 8/65 (12%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VL 109
           L VGPPG GKT LA+ VA E GV F S SG       V   A  +  L    +++   ++
Sbjct: 237 LLVGPPGTGKTLLAKAVAGEAGVPFFSMSGSDFVEMFVGVGASRVRDLFRQAKEKSPCII 296

Query: 110 FIDEI 114
           FIDEI
Sbjct: 297 FIDEI 301


>gi|257486571|ref|ZP_05640612.1| ATP-dependent protease La [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|330889510|gb|EGH22171.1| ATP-dependent protease La [Pseudomonas syringae pv. mori str.
           301020]
 gi|330989025|gb|EGH87128.1| ATP-dependent protease La [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 805

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 87/215 (40%), Gaps = 53/215 (24%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAKAGDLAALLT 101
           VL VGPPG+GKT++ + +A  LG  F   S                 + A+ G L   L 
Sbjct: 387 VLLVGPPGVGKTSVGRSIAESLGRPFYRLSVGGMRDEAEIKGHRRTYIGAQPGKLVQALK 446

Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAME----DFQLDLMVGEGPSARSVK 148
           ++E  + V+ +DEI ++    +        E L P       D  LDL           +
Sbjct: 447 DVEVMNPVIMLDEIDKMGQSYQGDPASALLETLDPEQNVEFLDHYLDL-----------R 495

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR----------GAKL 198
           ++LS+   +     +  +  PL DR  + IRL+ Y  E+   I +R          G   
Sbjct: 496 LDLSKVLFVCTANTLDSIPGPLLDRMEV-IRLSGYITEEKLAIAKRHLWPKQLEKAGVAK 554

Query: 199 TGLAVTDE---AACEIAMRSRGTPRIAGRLLRRVR 230
           + L+++D    A  E   R  G   +  +L + VR
Sbjct: 555 SKLSISDSALRAVIEGYAREAGVRHLEKQLGKLVR 589


>gi|255527646|ref|ZP_05394506.1| ATP-dependent metalloprotease FtsH [Clostridium carboxidivorans P7]
 gi|296186911|ref|ZP_06855312.1| ATP-dependent metallopeptidase HflB [Clostridium carboxidivorans
           P7]
 gi|255508659|gb|EET85039.1| ATP-dependent metalloprotease FtsH [Clostridium carboxidivorans P7]
 gi|296048625|gb|EFG88058.1| ATP-dependent metallopeptidase HflB [Clostridium carboxidivorans
           P7]
          Length = 600

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 195 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 225


>gi|303276573|ref|XP_003057580.1| microtubule-severing protein katanin 60kDa subunit [Micromonas
           pusilla CCMP1545]
 gi|226460237|gb|EEH57531.1| microtubule-severing protein katanin 60kDa subunit [Micromonas
           pusilla CCMP1545]
          Length = 484

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA-----KAGDLAALLTNLEDR---DV 108
           VL  GPPG GKT LA+ VA E G  F + S   +A     ++  +  +L +L  R     
Sbjct: 234 VLMFGPPGTGKTMLAKAVATECGTTFFNISSSTLASKYRGESERMVRILFDLARRHAPST 293

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 294 IFIDEIDSL 302


>gi|212690530|ref|ZP_03298658.1| hypothetical protein BACDOR_00012 [Bacteroides dorei DSM 17855]
 gi|212666879|gb|EEB27451.1| hypothetical protein BACDOR_00012 [Bacteroides dorei DSM 17855]
          Length = 370

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 61/127 (48%), Gaps = 29/127 (22%)

Query: 21  LLRPRTLEEF-----TGQVEACSNLKVFIEAAKARA-EALD---------HVLFVGPPGL 65
           L +P+ ++EF      GQ +A   L V +     R  + +D         +++ VG  G 
Sbjct: 20  LPKPKEIKEFLDQYIIGQDDAKRYLSVAVYNHYKRLLQKVDKDDIEIEKSNIIMVGSTGT 79

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL----------EDRDVLFI 111
           GKT LA+ +A+ L V F      V+ +AG    D+ +LLT L           +R ++FI
Sbjct: 80  GKTLLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESLLTRLLQVADYNVAEAERGIVFI 139

Query: 112 DEIHRLS 118
           DEI +++
Sbjct: 140 DEIDKIA 146


>gi|168026689|ref|XP_001765864.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162683041|gb|EDQ69455.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 554

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 88/214 (41%), Gaps = 35/214 (16%)

Query: 8   LSRNVSQEDADISL--LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPG 64
           L   +S E+ +I L   + R   E  G  +    +  ++   K + +A   VL FVGPPG
Sbjct: 21  LPWQISSEEHEIDLEAAKVRLDSEHYGLSKVKKRIIEYLAVRKLKPDARGPVLCFVGPPG 80

Query: 65  LGKTTLAQVVARELGVNF-RSTSGPVIAKA----------GDLAALLTNLEDR-----DV 108
           +GKT+LA  +A  LG  F R + G V  +A          G +   L +   R      V
Sbjct: 81  VGKTSLASSIAGALGRRFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGIKRVGVNNPV 140

Query: 109 LFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAAT 160
           + +DEI +    V         E+L P       D  +       +V  ++S+   +A  
Sbjct: 141 MLLDEIDKTGADVRGDPAAALLEVLDPEQNKTFNDHYL-------NVPFDVSKVVFVATA 193

Query: 161 TRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
            R+  +  PL DR  + I L  Y  E+   I  R
Sbjct: 194 NRMQTMPAPLLDRMEV-IELPGYTSEEKLRIAMR 226


>gi|28572335|ref|NP_789115.1| FtsH-like cell division protein [Tropheryma whipplei TW08/27]
 gi|28410466|emb|CAD66852.1| FtsH-like putative cell division protein [Tropheryma whipplei
           TW08/27]
          Length = 666

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 58/206 (28%), Positives = 96/206 (46%), Gaps = 20/206 (9%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           VL  GPPG GKT LA+ VA E GV F S SG    +   G  A+ + +L ++       +
Sbjct: 198 VLLFGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKQNSPSI 257

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQ--LDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
           +FIDEI  +            ++ +  L+ ++ E      VK N+    LIAAT R  +L
Sbjct: 258 IFIDEIDAVGRRRGSGFGGGHDEREQTLNQLLVEM-DGFDVKTNI---ILIAATNRSDVL 313

Query: 167 TNPL--QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGR 224
            + L    RF   + ++   ++    I+Q  A+   ++     + ++ + +R TP   G 
Sbjct: 314 DSALLRPGRFDRHVAIDAPNLQGRLKILQVHARTKPVS----KSVDLEVLARKTPGFTGA 369

Query: 225 LLRRVRDFAEVAHAKTITREIADAAL 250
            L  V + A +  A++  + I D AL
Sbjct: 370 DLANVLNEAALLTARSNAQIIDDRAL 395


>gi|332703912|ref|ZP_08424000.1| ATP-dependent Clp protease ATP-binding subunit clpX [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332554061|gb|EGJ51105.1| ATP-dependent Clp protease ATP-binding subunit clpX [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 415

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 61/144 (42%), Gaps = 30/144 (20%)

Query: 5   EGLLSRNVSQEDADISLLRPRTL-----EEFTGQVEACSNLKVFIEAAKARAEALD---- 55
           E +   +VS+   D  LL P+ +     E   GQ +A   L V +     R    D    
Sbjct: 44  EIIAQESVSEGLEDGRLLTPQEIKDQLDEHVIGQEQAKKVLSVAVHNHYKRVYYADTAGE 103

Query: 56  -------HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD--------LAALL 100
                  ++L +GP G GKT LAQ +AR L V F       + +AG         L  LL
Sbjct: 104 DVEIDKSNILLLGPTGCGKTLLAQTLARVLKVPFAIADATTLTEAGYVGEDVENILVQLL 163

Query: 101 TNLE------DRDVLFIDEIHRLS 118
            N +       R +++IDEI +++
Sbjct: 164 QNADYDIEAASRGIVYIDEIDKIA 187


>gi|303231335|ref|ZP_07318069.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Veillonella
           atypica ACS-049-V-Sch6]
 gi|302513931|gb|EFL55939.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Veillonella
           atypica ACS-049-V-Sch6]
          Length = 417

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           +VLF+GP G GKT LAQ +A+ L V F       + +AG    D+  +L  L        
Sbjct: 110 NVLFIGPTGSGKTLLAQTLAKMLEVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDI 169

Query: 104 --EDRDVLFIDEIHRLS 118
              +R +++IDEI +++
Sbjct: 170 ERAERGIIYIDEIDKIA 186


>gi|302521006|ref|ZP_07273348.1| cell division protein FtsH [Streptomyces sp. SPB78]
 gi|333025313|ref|ZP_08453377.1| putative cell division protein FtsH [Streptomyces sp. Tu6071]
 gi|302429901|gb|EFL01717.1| cell division protein FtsH [Streptomyces sp. SPB78]
 gi|332745165|gb|EGJ75606.1| putative cell division protein FtsH [Streptomyces sp. Tu6071]
          Length = 682

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 72/255 (28%), Positives = 113/255 (44%), Gaps = 53/255 (20%)

Query: 34  VEACSNLKVFI-EAAKARA---EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPV 89
           VE    +K F+ E AK +A   +    VL  GPPG GKT LA+ VA E GV F S SG  
Sbjct: 180 VEELQEIKEFLQEPAKFQAVGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSD 239

Query: 90  IAK--AGDLAALLTNLEDR------DVLFIDEI-----HRLSIIVEEILYPAMEDFQLDL 136
             +   G  A+ + +L ++       ++F+DEI     HR + +                
Sbjct: 240 FVEMFVGVGASRVRDLFEQAKANAPAIVFVDEIDAVGRHRGAGL---------------- 283

Query: 137 MVGEGPSARSVKIN-----LSRFT------LIAATTRVGLLTNPL--QDRFGIPIRLNFY 183
             G G   R   +N     +  F       LIAAT R  +L   L    RF   I ++  
Sbjct: 284 --GGGHDEREQTLNQLLVEMDGFDVKGGVILIAATNRPDILDPALLRPGRFDRQIAVDRP 341

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           +++    I++    + G  VTD    ++A  +R TP   G  L  V + A +  A++  +
Sbjct: 342 DMQGRLEILK--VHVQGKPVTD--GVDLAAVARRTPGFTGADLANVLNEAALLTARS-DK 396

Query: 244 EIADAALLRLAIDKM 258
           ++ D ++L  AID++
Sbjct: 397 KLIDNSMLDEAIDRV 411


>gi|225850709|ref|YP_002730943.1| ATP-dependent protease La [Persephonella marina EX-H1]
 gi|225646048|gb|ACO04234.1| ATP-dependent protease La [Persephonella marina EX-H1]
          Length = 801

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 65/155 (41%), Gaps = 32/155 (20%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA---GDLAALLTNLEDR------ 106
           + FVGPPG+GKT+L + +AR LG  F R + G V  +A   G     +  L  R      
Sbjct: 366 LCFVGPPGVGKTSLGKSIARSLGRKFVRQSLGGVRDEAEIRGHRRTYVGALPGRIIQAIK 425

Query: 107 ------DVLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLS 152
                  V+ +DE+ +L+            E+L P       D  +G       V  +LS
Sbjct: 426 QAGTKNPVIMLDEVDKLASDFRGDPASALLEVLDPEQNREFTDHYLG-------VPFDLS 478

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
               I    R+  +  PL DR  + IR+  Y  E+
Sbjct: 479 EVMFICTANRIDTIPRPLLDRMEV-IRIPGYSEEE 512


>gi|195999648|ref|XP_002109692.1| hypothetical protein TRIADDRAFT_53969 [Trichoplax adhaerens]
 gi|190587816|gb|EDV27858.1| hypothetical protein TRIADDRAFT_53969 [Trichoplax adhaerens]
          Length = 806

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 17/24 (70%), Positives = 18/24 (75%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVN 81
           L  GPPGLGKTTLA V+AR  G N
Sbjct: 291 LLCGPPGLGKTTLAHVIARHAGYN 314


>gi|29347020|ref|NP_810523.1| DNA polymerase III subunit gamma/tau [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253572655|ref|ZP_04850056.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. 1_1_6]
 gi|29338918|gb|AAO76717.1| DNA polymerase III subunit gamma/tau [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|251837787|gb|EES65877.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. 1_1_6]
          Length = 619

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 10/110 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP T E   GQ    + LK  I   K     L H  LF GP G+GKTT A++ A+ +   
Sbjct: 12  RPSTFESVVGQRALTTTLKNAIATQK-----LAHAYLFCGPRGVGKTTCARIFAKTINCM 66

Query: 82  FRSTSGPVIAKAGDLAAL----LTNLEDRDVLFIDEIHRLSIIVEEILYP 127
             +T G    +     A       N+ + D    + +  +  +VE++  P
Sbjct: 67  TPTTDGEACNECESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIP 116


>gi|324508707|gb|ADY43673.1| Replication factor C subunit 4 [Ascaris suum]
          Length = 354

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 5/59 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
          RPR +++   Q E  S LK  ++ A      L ++LF GPPG GKT+ A  + REL  N
Sbjct: 36 RPRKVDDIVFQDEVVSVLKKVLKGAD-----LPNLLFYGPPGTGKTSAAVALCRELFKN 89


>gi|282880908|ref|ZP_06289599.1| ATP-dependent metallopeptidase HflB [Prevotella timonensis CRIS
           5C-B1]
 gi|281305131|gb|EFA97200.1| ATP-dependent metallopeptidase HflB [Prevotella timonensis CRIS
           5C-B1]
          Length = 673

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 35/65 (53%), Gaps = 8/65 (12%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DVL 109
           L VGPPG GKT LA+ VA E GV F S SG       V   A  +  L    +++   ++
Sbjct: 237 LLVGPPGTGKTLLAKAVAGEAGVPFFSMSGSDFVEMFVGVGASRVRDLFRQAKEKSPSII 296

Query: 110 FIDEI 114
           FIDEI
Sbjct: 297 FIDEI 301


>gi|210615409|ref|ZP_03290536.1| hypothetical protein CLONEX_02752 [Clostridium nexile DSM 1787]
 gi|210150258|gb|EEA81267.1| hypothetical protein CLONEX_02752 [Clostridium nexile DSM 1787]
          Length = 426

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 57/129 (44%), Gaps = 28/129 (21%)

Query: 18  DISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEA---------LDHVLFVGPP 63
           DI+LL+P  ++ F      GQ EA   L V +     R  A           ++L +GP 
Sbjct: 69  DINLLKPEEIKAFLDEYVIGQDEAKKVLSVAVYNHYKRIMAEKDLGVELQKSNILMLGPT 128

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------------EDRDVL 109
           G GKT LAQ +A+ L V F       + +AG +   + N+               +  ++
Sbjct: 129 GCGKTLLAQTLAKILNVPFAIADATALTEAGYVGEDVENILLKIIQAADGDIERAEHGII 188

Query: 110 FIDEIHRLS 118
           ++DEI +++
Sbjct: 189 YLDEIDKIT 197


>gi|221061817|ref|XP_002262478.1| cell division protein ftsh [Plasmodium knowlesi strain H]
 gi|193811628|emb|CAQ42356.1| cell division protein ftsh, putative [Plasmodium knowlesi strain H]
          Length = 862

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL VGPPG GKT LA+ VA E  V +  TSGP
Sbjct: 189 VLLVGPPGSGKTMLARAVATEANVPYIYTSGP 220


>gi|104783338|ref|YP_609836.1| DNA-binding ATP-dependent protease La-2 [Pseudomonas entomophila
           L48]
 gi|95112325|emb|CAK17052.1| DNA-binding ATP-dependent protease La-2 [Pseudomonas entomophila
           L48]
          Length = 807

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 86/215 (40%), Gaps = 53/215 (24%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAKAGDLAALLT 101
           VL VGPPG+GKT++ + +A  LG  F   S                 + A+ G L   L 
Sbjct: 388 VLLVGPPGVGKTSIGKSIAESLGRPFYRFSVGGMRDEAEIKGHRRTYIGAQPGKLVQALK 447

Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAME----DFQLDLMVGEGPSARSVK 148
            +E  + V+ +DEI ++    +        E L P       D  LDL           +
Sbjct: 448 EVEVMNPVIMLDEIDKMGQSYQGDPASALLETLDPEQNVDFLDHYLDL-----------R 496

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR----------GAKL 198
           ++LS+   +     +  +  PL DR  + IRL+ Y  E+   I +R          G   
Sbjct: 497 LDLSKVLFVCTANTLDSIPGPLLDRMEV-IRLSGYITEEKLAIAKRHLWPKQLEKAGVSK 555

Query: 199 TGLAVTDEA---ACEIAMRSRGTPRIAGRLLRRVR 230
             L+++D A     E   R  G  ++  +L + VR
Sbjct: 556 HSLSISDSALRTVIEGYAREAGVRQLEKQLGKLVR 590


>gi|21325468|dbj|BAC00090.1| ATP-dependent Zn proteases [Corynebacterium glutamicum ATCC 13032]
          Length = 860

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 32/70 (45%), Positives = 35/70 (50%), Gaps = 9/70 (12%)

Query: 26  TLEEFTGQVEACSNL---KVFIEAAKARAEALDH-----VLFVGPPGLGKTTLAQVVARE 77
           T  +  G  EA   L   K F+E    R EAL       VL  GPPG GKT LA+ VA E
Sbjct: 170 TFADVAGAEEAVDELHEIKDFLEDP-TRYEALGAKIPRGVLLYGPPGTGKTLLARAVAGE 228

Query: 78  LGVNFRSTSG 87
            GV F S SG
Sbjct: 229 AGVPFYSISG 238


>gi|71735297|ref|YP_276077.1| ATP-dependent protease La [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|289649883|ref|ZP_06481226.1| ATP-dependent protease La [Pseudomonas syringae pv. aesculi str.
           2250]
 gi|71555850|gb|AAZ35061.1| ATP-dependent protease La [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|320325575|gb|EFW81637.1| ATP-dependent protease La [Pseudomonas syringae pv. glycinea str.
           B076]
 gi|320327139|gb|EFW83153.1| ATP-dependent protease La [Pseudomonas syringae pv. glycinea str.
           race 4]
 gi|330879209|gb|EGH13358.1| ATP-dependent protease La [Pseudomonas syringae pv. glycinea str.
           race 4]
          Length = 805

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 87/215 (40%), Gaps = 53/215 (24%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAKAGDLAALLT 101
           VL VGPPG+GKT++ + +A  LG  F   S                 + A+ G L   L 
Sbjct: 387 VLLVGPPGVGKTSVGRSIAESLGRPFYRLSVGGMRDEAEIKGHRRTYIGAQPGKLVQALK 446

Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAME----DFQLDLMVGEGPSARSVK 148
           ++E  + V+ +DEI ++    +        E L P       D  LDL           +
Sbjct: 447 DVEVMNPVIMLDEIDKMGQSYQGDPASALLETLDPEQNVEFLDHYLDL-----------R 495

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR----------GAKL 198
           ++LS+   +     +  +  PL DR  + IRL+ Y  E+   I +R          G   
Sbjct: 496 LDLSKVLFVCTANTLDSIPGPLLDRMEV-IRLSGYITEEKLAIAKRHLWPKQLEKAGVAK 554

Query: 199 TGLAVTDE---AACEIAMRSRGTPRIAGRLLRRVR 230
           + L+++D    A  E   R  G   +  +L + VR
Sbjct: 555 SKLSISDSALRAVIEGYAREAGVRHLEKQLGKLVR 589


>gi|14520328|ref|NP_125803.1| replication factor C small subunit [Pyrococcus abyssi GE5]
 gi|42559543|sp|Q9V2G4|RFCS_PYRAB RecName: Full=Replication factor C small subunit; Short=RFC small
           subunit; AltName: Full=Clamp loader small subunit;
           AltName: Full=PabRFC small subunit; Contains: RecName:
           Full=Pab RFC-1 intein; Contains: RecName: Full=Pab RFC-2
           intein
 gi|5457543|emb|CAB49034.1| rfcS intein containing activator 1, replication factor C, small
           subunit [Pyrococcus abyssi GE5]
          Length = 1437

 Score = 41.2 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 13/107 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK--TTLAQVVAR-ELG 79
           RP+ LEE  GQ      LK +++       ++ H+LF GPPG+GK  T  A+V+A  EL 
Sbjct: 22  RPQKLEEIVGQEHIVKRLKHYVKTG-----SMPHLLFAGPPGVGKCLTGDAKVIANGEL- 75

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
               +T G ++ +  +     T +    VL IDE  +L  +  E +Y
Sbjct: 76  ----TTIGELVERISNGKLGPTPVRGLTVLGIDEDGKLVELPVEYVY 118


>gi|296243008|ref|YP_003650495.1| proteasome-activating nucleotidase [Thermosphaera aggregans DSM
           11486]
 gi|296095592|gb|ADG91543.1| Proteasome-activating nucleotidase [Thermosphaera aggregans DSM
           11486]
          Length = 404

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 56/124 (45%), Gaps = 22/124 (17%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL------EDRDV 108
           VL  GPPG GKT LA+ VA E G  F S  G  + +   G+ A ++  L      +   +
Sbjct: 172 VLLYGPPGCGKTMLAKAVASEAGATFISIVGSELVQKFIGEGARIVRELFAYARRKAPAI 231

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMV------GEGPSARSVKINLSRFTLIAATTR 162
           +FIDEI  ++    +I      + Q  LM       G  P        L R  +IAAT R
Sbjct: 232 IFIDEIDAIAAKRIDIGTSGEREVQRTLMQLLAELDGFKP--------LDRIKVIAATNR 283

Query: 163 VGLL 166
           + +L
Sbjct: 284 IDIL 287


>gi|288870055|ref|ZP_06112759.2| ATP-dependent metalloprotease FtsH [Clostridium hathewayi DSM
           13479]
 gi|288868612|gb|EFD00911.1| ATP-dependent metalloprotease FtsH [Clostridium hathewayi DSM
           13479]
          Length = 606

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           +L VGPPG GKT LA+ VA E GV F S SG
Sbjct: 198 ILLVGPPGTGKTLLAKAVAGEAGVPFFSISG 228


>gi|296121876|ref|YP_003629654.1| ATP-dependent metalloprotease FtsH [Planctomyces limnophilus DSM
           3776]
 gi|296014216|gb|ADG67455.1| ATP-dependent metalloprotease FtsH [Planctomyces limnophilus DSM
           3776]
          Length = 650

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL +GPPG GKT LA+  A E GV F S +G       V   A  +  L  N ++    +
Sbjct: 233 VLLMGPPGTGKTLLARATAGEAGVPFYSINGSEFIQMFVGVGASRVRDLFRNAKENSPCI 292

Query: 109 LFIDEI 114
           LFIDEI
Sbjct: 293 LFIDEI 298


>gi|225181447|ref|ZP_03734890.1| ATP-dependent metalloprotease FtsH [Dethiobacter alkaliphilus AHT
           1]
 gi|225167845|gb|EEG76653.1| ATP-dependent metalloprotease FtsH [Dethiobacter alkaliphilus AHT
           1]
          Length = 652

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT +A+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 189 VLLVGPPGTGKTLIARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKSAPCI 248

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 249 IFIDEI 254


>gi|159471125|ref|XP_001693707.1| membrane AAA-metalloprotease [Chlamydomonas reinhardtii]
 gi|158283210|gb|EDP08961.1| membrane AAA-metalloprotease [Chlamydomonas reinhardtii]
          Length = 578

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F  TSG
Sbjct: 187 VLLVGPPGTGKTMLARAIAGEAGVPFFYTSG 217


>gi|146161442|ref|XP_001007155.2| hypothetical protein TTHERM_00213600 [Tetrahymena thermophila]
 gi|146146775|gb|EAR86910.2| hypothetical protein TTHERM_00213600 [Tetrahymena thermophila
          SB210]
          Length = 345

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 5/62 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81
          RP  L+         + +K FIE  K     L ++LF GPPG GKT+L   +A++L G N
Sbjct: 25 RPENLDNVISHEYIVATIKKFIEEDKK----LPNLLFYGPPGTGKTSLIVALAKQLYGKN 80

Query: 82 FR 83
          ++
Sbjct: 81 YK 82


>gi|320580148|gb|EFW94371.1| Putative ATPase of the AAA family [Pichia angusta DL-1]
          Length = 809

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 554 VLMWGPPGCGKTLLAKAVANESKANFISVKGP 585



 Score = 39.3 bits (90), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL  GPPG GKTT+A  +A EL V F S S P +
Sbjct: 222 VLLHGPPGCGKTTIAYALAGELQVPFISISAPSV 255


>gi|302038231|ref|YP_003798553.1| cell division protease FtsH [Candidatus Nitrospira defluvii]
 gi|300606295|emb|CBK42628.1| Cell division protease FtsH [Candidatus Nitrospira defluvii]
          Length = 594

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           +L VGPPG GKT LA+ VA E GV F S SG
Sbjct: 187 ILLVGPPGTGKTLLAKAVAGEAGVPFFSISG 217


>gi|298488684|ref|ZP_07006713.1| ATP-dependent protease La Type I [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298156757|gb|EFH97848.1| ATP-dependent protease La Type I [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 805

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 87/215 (40%), Gaps = 53/215 (24%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAKAGDLAALLT 101
           VL VGPPG+GKT++ + +A  LG  F   S                 + A+ G L   L 
Sbjct: 387 VLLVGPPGVGKTSVGRSIAESLGRPFYRLSVGGMRDEAEIKGHRRTYIGAQPGKLVQALK 446

Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAME----DFQLDLMVGEGPSARSVK 148
           ++E  + V+ +DEI ++    +        E L P       D  LDL           +
Sbjct: 447 DVEVMNPVIMLDEIDKMGQSYQGDPASALLETLDPEQNVEFLDHYLDL-----------R 495

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR----------GAKL 198
           ++LS+   +     +  +  PL DR  + IRL+ Y  E+   I +R          G   
Sbjct: 496 LDLSKVLFVCTANTLDSIPGPLLDRMEV-IRLSGYITEEKLAIAKRHLWPKQLEKAGVAK 554

Query: 199 TGLAVTDE---AACEIAMRSRGTPRIAGRLLRRVR 230
           + L+++D    A  E   R  G   +  +L + VR
Sbjct: 555 SKLSISDSALRAVIEGYAREAGVRHLEKQLGKLVR 589


>gi|266624422|ref|ZP_06117357.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           hathewayi DSM 13479]
 gi|288863729|gb|EFC96027.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           hathewayi DSM 13479]
          Length = 433

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 62/130 (47%), Gaps = 28/130 (21%)

Query: 17  ADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARA---EALD------HVLFVGP 62
           +DI+L++P+ ++ F      GQ  A   L V +     R     ++D      ++L +GP
Sbjct: 60  SDINLMKPKEIKSFLDDYVIGQDSAKKVLSVAVYNHYKRITSRRSMDVDVQKSNILMLGP 119

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---EDRD-------V 108
            G GKT +AQ +A+ L V F       + +AG    D+  +L  L    D D       +
Sbjct: 120 TGCGKTYVAQTLAKVLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDISRAEYGI 179

Query: 109 LFIDEIHRLS 118
           ++IDEI +++
Sbjct: 180 IYIDEIDKIT 189


>gi|227512324|ref|ZP_03942373.1| M41 family endopeptidase FtsH [Lactobacillus buchneri ATCC 11577]
 gi|227084499|gb|EEI19811.1| M41 family endopeptidase FtsH [Lactobacillus buchneri ATCC 11577]
          Length = 717

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           VL  GPPG GKT LA+ VA E GV F S SG    +   G  A+ + +L D+       +
Sbjct: 227 VLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFDQAKKAAPAI 286

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 287 IFIDEI 292


>gi|157363863|ref|YP_001470630.1| DNA polymerase III, subunits gamma and tau [Thermotoga lettingae
           TMO]
 gi|157314467|gb|ABV33566.1| DNA polymerase III, subunits gamma and tau [Thermotoga lettingae
           TMO]
          Length = 465

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 56/258 (21%), Positives = 100/258 (38%), Gaps = 56/258 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  ++   Q++A    K+ ++ A  + +     +F GP G GKT++A+++A+ L  + 
Sbjct: 9   RPKNFDQIIDQLQA----KLVLQNALLKNKISHAYIFSGPRGTGKTSVARILAKALNCSN 64

Query: 83  RSTSGPV------------------------------IAKAGDLAALLTNLEDRDVLFID 112
           R    P                               I K  D       L    +  ID
Sbjct: 65  RKGYEPCCECESCLSIDRGTHPDVIELDAASNRGIDEIRKIRDAVGFKPMLSSHKIYIID 124

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E H L+           E F   L   E P  + +         + ATT +  +   +  
Sbjct: 125 EFHMLT----------REAFNALLKTLEEPPEKVL--------FVLATTNLERVPQTIIS 166

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R  +    NF E   L+ I ++ A    + + ++AA  IA R+ G  R A   L ++ ++
Sbjct: 167 RCQVIEFRNFSEDAILENI-RKVAHFESIELHEDAARMIARRASGGMRDALSYLEQIANY 225

Query: 233 AEVAHAKTITREIADAAL 250
           A+    + IT ++ + AL
Sbjct: 226 AD---GQVITPQVVEKAL 240


>gi|153941351|ref|YP_001392879.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum F str.
           Langeland]
 gi|152937247|gb|ABS42745.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum F str.
           Langeland]
 gi|295320856|gb|ADG01234.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum F str.
           230613]
          Length = 601

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 195 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 225


>gi|108760095|ref|YP_632507.1| ATP-dependent metalloprotease FtsH [Myxococcus xanthus DK 1622]
 gi|108463975|gb|ABF89160.1| ATP-dependent metalloprotease FtsH [Myxococcus xanthus DK 1622]
          Length = 674

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 37/67 (55%), Gaps = 10/67 (14%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI---------AKAGDLAALLTNLEDRD 107
           VL VGPPG GKT LA+ VA E GV F S SG            A+  DL A  T+ +   
Sbjct: 226 VLLVGPPGTGKTLLARAVAGEAGVPFFSLSGSEFVEMFVGVGAARVRDLFAQATS-KAPC 284

Query: 108 VLFIDEI 114
           ++FIDE+
Sbjct: 285 IIFIDEL 291


>gi|15922015|ref|NP_377684.1| cell division control protein [Sulfolobus tokodaii str. 7]
 gi|15622803|dbj|BAB66793.1| 587aa long hypothetical cell division control protein [Sulfolobus
           tokodaii str. 7]
          Length = 587

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 8/81 (9%)

Query: 46  AAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED 105
           A K   + +  +L  GPPG GKT++A+ +A EL  +F   SG  I+ AG   A     E 
Sbjct: 353 AEKLGIKPVKGLLLYGPPGTGKTSIAKALANELNASFIILSGEEISSAGPFNAGEIIAEK 412

Query: 106 ----RD----VLFIDEIHRLS 118
               RD    ++FIDEI  ++
Sbjct: 413 FHIARDNAPAIIFIDEIDMIA 433


>gi|323491004|ref|ZP_08096198.1| ATP-dependent metalloprotease FtsH [Planococcus donghaensis MPA1U2]
 gi|323395360|gb|EGA88212.1| ATP-dependent metalloprotease FtsH [Planococcus donghaensis MPA1U2]
          Length = 672

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           +L VGPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 203 ILLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 262

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 263 IFIDEI 268


>gi|302388370|ref|YP_003824192.1| ATP-dependent metalloprotease FtsH [Clostridium saccharolyticum
           WM1]
 gi|302198998|gb|ADL06569.1| ATP-dependent metalloprotease FtsH [Clostridium saccharolyticum
           WM1]
          Length = 606

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           +L VGPPG GKT LA+ VA E GV F S SG
Sbjct: 196 ILLVGPPGTGKTLLAKAVAGEAGVPFFSISG 226


>gi|281211293|gb|EFA85458.1| AAA ATPase domain-containing protein [Polysphondylium pallidum
           PN500]
          Length = 442

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTS-GPVIAKA-GDLAALLTNL------EDRDV 108
           +L  GPPG GK+ LA+ VA E+   F S S   ++ K  GD   L+  L       +  V
Sbjct: 170 ILLYGPPGTGKSYLAKAVATEISSTFFSISPSDIVTKWLGDSEKLVKQLFEMARAANNSV 229

Query: 109 LFIDEIHRL 117
           +F+DEI  L
Sbjct: 230 IFVDEIDSL 238


>gi|301093002|ref|XP_002997350.1| replication factor C subunit, putative [Phytophthora infestans
           T30-4]
 gi|262110748|gb|EEY68800.1| replication factor C subunit, putative [Phytophthora infestans
           T30-4]
          Length = 893

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 16/73 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFI---EAAKARA-------------EALDHVLFVGPPGLG 66
           +P+TL    G +E    LK ++   EA   +                   VL  GPPG+G
Sbjct: 341 KPQTLNHMIGNIELGKKLKTWLLDWEAMHVKGTKKVPFSTKLSENRGAKTVLLSGPPGIG 400

Query: 67  KTTLAQVVARELG 79
           KTT+A +VARE G
Sbjct: 401 KTTIANLVARECG 413


>gi|291614262|ref|YP_003524419.1| ATP-dependent Clp protease ATP-binding protein ClpX [Sideroxydans
           lithotrophicus ES-1]
 gi|291584374|gb|ADE12032.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sideroxydans
           lithotrophicus ES-1]
          Length = 418

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L VGP G GKT LAQ +AR L V F       + +AG +   + N+         
Sbjct: 111 AKSNILLVGPTGSGKTLLAQTLARLLNVPFVMADATTLTEAGYVGEDVENIIQKLLQACD 170

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDEI ++S
Sbjct: 171 YDVERAQRGIVYIDEIDKIS 190


>gi|242062574|ref|XP_002452576.1| hypothetical protein SORBIDRAFT_04g028420 [Sorghum bicolor]
 gi|241932407|gb|EES05552.1| hypothetical protein SORBIDRAFT_04g028420 [Sorghum bicolor]
          Length = 543

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 83/213 (38%), Gaps = 55/213 (25%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA---------GDLAALLTNLEDRD 107
           VLF GPPG GKT+ A+V+A++ GV        V+            G + +L  +L +  
Sbjct: 314 VLFEGPPGTGKTSSARVIAKQAGVPLLYVPLEVVMSKYYGESERLLGSVFSLANDLPEGG 373

Query: 108 VLFIDEIHRLSIIVEEILYPA-----------MEDFQLDLMVGEGPSARSVKINLSRFTL 156
           ++F+DE+   +I  +  ++ A           ++ F+ D                 R  +
Sbjct: 374 IIFLDEVDSFAIARDSEMHEATRRILSVILRQIDGFEQD----------------RRVVV 417

Query: 157 IAATTRVGLLTNPLQDR------FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACE 210
           IAAT R   L   L  R      FG+P +    EI       Q    LT          E
Sbjct: 418 IAATNRKEDLDPALISRFDSIICFGLPDQQTRAEI-----AAQYAKHLT--------RSE 464

Query: 211 IAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           +   S  T  ++GR +R V   AE   A  + R
Sbjct: 465 LVQFSLATEEMSGRDIRDVCQQAERHWASKLIR 497


>gi|222617306|gb|EEE53438.1| hypothetical protein OsJ_36529 [Oryza sativa Japonica Group]
          Length = 900

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 89/196 (45%), Gaps = 20/196 (10%)

Query: 40  LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAAL 99
           +K+  E   A ++ L  +  VGP GLGKTTLA  V R+L   F+  +   +++  D+  +
Sbjct: 176 IKLLTEGEGASSQKLKVISIVGPGGLGKTTLANEVFRKLESQFQCRAFVSLSQQPDVKKI 235

Query: 100 LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD----LMVGEGPSARSVK-INLSRF 154
           + N+  +  +   E   + I  EE L  A  +F  +    +++ +  S ++ K I  + F
Sbjct: 236 VRNIYCQ--VSQQEYGNIDIWDEEKLINATREFLTNKRYFVVIDDIWSTQAWKTIRCALF 293

Query: 155 -----TLIAATTR----VGLLTNPLQDR-FGI-PIRLNFYEIEDLKTIVQRGAKLTGLAV 203
                + I  TTR          P  DR F I P+ ++  +   LK I   G+K   +  
Sbjct: 294 VNNCGSRIMTTTRNMAIAKSCCTPDHDRVFEIMPLSIDNSKSLFLKRIF--GSKDVCIPQ 351

Query: 204 TDEAACEIAMRSRGTP 219
            DE   EI  +  G+P
Sbjct: 352 LDEVCYEILKKCGGSP 367


>gi|297582403|ref|YP_003698183.1| ATP-dependent metalloprotease FtsH [Bacillus selenitireducens
           MLS10]
 gi|297140860|gb|ADH97617.1| ATP-dependent metalloprotease FtsH [Bacillus selenitireducens
           MLS10]
          Length = 681

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT +A+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 201 VLLVGPPGTGKTLIARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 260

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 261 IFIDEI 266


>gi|151944222|gb|EDN62501.1| AAA ATPase [Saccharomyces cerevisiae YJM789]
          Length = 1030

 Score = 41.2 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 4/48 (8%)

Query: 41  KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           ++F    K R+     +LF GPPG GKT +A+ +A    +NF S  GP
Sbjct: 756 ELFTSGIKKRS----GILFYGPPGTGKTLMAKAIATNFSLNFFSVKGP 799


>gi|119510170|ref|ZP_01629309.1| Peptidase M41, FtsH [Nodularia spumigena CCY9414]
 gi|119465231|gb|EAW46129.1| Peptidase M41, FtsH [Nodularia spumigena CCY9414]
          Length = 291

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 212 VLLVGPPGTGKTMLAKAVAGEAGVPFFSISG 242


>gi|116495971|ref|YP_807705.1| ATP-dependent Zn protease [Lactobacillus casei ATCC 334]
 gi|191639450|ref|YP_001988616.1| ATP-dependent zinc metalloendopeptidase FtsH (Cell division protein
           FtsH) [Lactobacillus casei BL23]
 gi|239630370|ref|ZP_04673401.1| ATP-dependent Zn protease [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|301067521|ref|YP_003789544.1| ATP-dependent Zn protease [Lactobacillus casei str. Zhang]
 gi|116106121|gb|ABJ71263.1| membrane protease FtsH catalytic subunit [Lactobacillus casei ATCC
           334]
 gi|190713752|emb|CAQ67758.1| ATP-dependent zinc metalloendopeptidase FtsH (Cell division protein
           FtsH) [Lactobacillus casei BL23]
 gi|239526653|gb|EEQ65654.1| ATP-dependent Zn protease [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|300439928|gb|ADK19694.1| ATP-dependent Zn protease [Lactobacillus casei str. Zhang]
 gi|327383542|gb|AEA55018.1| ATP-dependent metalloprotease FtsH [Lactobacillus casei LC2W]
 gi|327386735|gb|AEA58209.1| ATP-dependent metalloprotease FtsH [Lactobacillus casei BD-II]
          Length = 715

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           VL  GPPG GKT LA+ VA E GV F S SG    +   G  A+ + +L D+       +
Sbjct: 225 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFDQAKKAAPSI 284

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 285 IFIDEI 290


>gi|91215670|ref|ZP_01252640.1| putative transmembrane AAA-metalloprotease FtsH [Psychroflexus
           torquis ATCC 700755]
 gi|91186136|gb|EAS72509.1| putative transmembrane AAA-metalloprotease FtsH [Psychroflexus
           torquis ATCC 700755]
          Length = 699

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 35/65 (53%), Gaps = 8/65 (12%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DVL 109
           L VGPPG GKT LA+ VA E GV F S SG       V   A  +  L    +++   ++
Sbjct: 238 LLVGPPGTGKTLLAKAVAGEAGVPFFSLSGSDFVEMFVGVGASRVRDLFKQAKEKSPSII 297

Query: 110 FIDEI 114
           FIDEI
Sbjct: 298 FIDEI 302


>gi|89889589|ref|ZP_01201100.1| ATPase involved in DNA repair [Flavobacteria bacterium BBFL7]
 gi|89517862|gb|EAS20518.1| ATPase involved in DNA repair [Flavobacteria bacterium BBFL7]
          Length = 1654

 Score = 41.2 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 25/42 (59%)

Query: 50   RAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA 91
            R + +  +L + PPG GKTTL + VA  LG+ F   +GP I 
Sbjct: 1283 RTDRMGLLLLISPPGYGKTTLMEYVANRLGLIFMKINGPAIG 1324


>gi|47087311|ref|NP_998649.1| nuclear valosin-containing protein-like [Danio rerio]
 gi|27881916|gb|AAH44464.1| Nuclear VCP-like [Danio rerio]
          Length = 796

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT LA+ VA   G+NF S  GP
Sbjct: 557 LLLAGPPGCGKTLLAKAVANASGLNFISVKGP 588



 Score = 35.8 bits (81), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 32/65 (49%), Gaps = 8/65 (12%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDRD------VL 109
           L  GPPG GKT LAQ VA E  +     S P  V   +G+    L  L ++       +L
Sbjct: 264 LLHGPPGCGKTLLAQAVAGETALPLLKISAPELVSGVSGESEQKLRELFEQAISSAPCIL 323

Query: 110 FIDEI 114
           FIDEI
Sbjct: 324 FIDEI 328


>gi|319891430|ref|YP_004148305.1| DNA polymerase III subunits gamma and tau [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317161126|gb|ADV04669.1| DNA polymerase III subunits gamma and tau [Staphylococcus
           pseudintermedius HKU10-03]
 gi|323465400|gb|ADX77553.1| DNA polymerase III, subunits gamma and tau [Staphylococcus
           pseudintermedius ED99]
          Length = 567

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 6/92 (6%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           + RP++ E+  GQ      LK  I    A+ +     +F GP G GKT++A++ A+ +  
Sbjct: 9   MFRPQSFEDVVGQEHVTKTLKNAI----AKGKQSHAYIFSGPRGTGKTSIAKIFAKAINC 64

Query: 81  NFRSTSGPVIAKAGDLAALLTNLEDRDVLFID 112
             R    P    A      +T   + DV+ ID
Sbjct: 65  EVRDDGEPCNECAS--CKGITQGYNSDVIEID 94


>gi|294083693|ref|YP_003550450.1| ATP-dependent protease Clp [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292663265|gb|ADE38366.1| ATP-dependent protease Clp [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 420

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L VGP G GKT LAQ +AR L V F       + +AG +   + N+            
Sbjct: 112 NILLVGPTGCGKTLLAQTLARMLDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNV 171

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDE+ ++S
Sbjct: 172 ERAQRGIVYIDEVDKIS 188


>gi|227509312|ref|ZP_03939361.1| M41 family endopeptidase FtsH [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227191242|gb|EEI71309.1| M41 family endopeptidase FtsH [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 717

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           VL  GPPG GKT LA+ VA E GV F S SG    +   G  A+ + +L D+       +
Sbjct: 227 VLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFDQAKKAAPAI 286

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 287 IFIDEI 292


>gi|153952819|ref|YP_001393584.1| FtsH1 [Clostridium kluyveri DSM 555]
 gi|219853484|ref|YP_002470606.1| hypothetical protein CKR_0141 [Clostridium kluyveri NBRC 12016]
 gi|146345700|gb|EDK32236.1| FtsH1 [Clostridium kluyveri DSM 555]
 gi|219567208|dbj|BAH05192.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 600

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL VGPPG GKT LA+ ++ E GV F S SG    +   G  A+ + +L D+       +
Sbjct: 195 VLLVGPPGTGKTLLAKAISGEAGVPFFSISGSDFVEMFVGVGASRVRDLFDQAKKNSPCI 254

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 255 VFIDEI 260


>gi|94986632|ref|YP_594565.1| ATP-dependent Zn proteases [Lawsonia intracellularis PHE/MN1-00]
 gi|94730881|emb|CAJ54244.1| ATP-dependent Zn proteases [Lawsonia intracellularis PHE/MN1-00]
          Length = 635

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 190 VLLVGPPGTGKTLLARAVAGEAGVPFFSISG 220


>gi|113474440|ref|YP_720501.1| ATP-dependent protease ATP-binding subunit ClpX [Trichodesmium
           erythraeum IMS101]
 gi|123057080|sp|Q118P6|CLPX_TRIEI RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|110165488|gb|ABG50028.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Trichodesmium
           erythraeum IMS101]
          Length = 449

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 44/93 (47%), Gaps = 11/93 (11%)

Query: 43  FIEAAKARAEALDHV-------LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG- 94
           F+EA K+   + D V       L +GP G GKT LAQ +A  L V F       + +AG 
Sbjct: 118 FLEAKKSGKSSQDEVELQKSNILLIGPTGCGKTLLAQTLADLLDVPFAVADATTLTEAGY 177

Query: 95  ---DLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
              D+  +L  L     L +DE  R  I ++EI
Sbjct: 178 VGEDVENILLRLLQVADLEVDEAQRGIIYIDEI 210


>gi|332703913|ref|ZP_08424001.1| anti-sigma H sporulation factor, LonB [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332554062|gb|EGJ51106.1| anti-sigma H sporulation factor, LonB [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 820

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 81/195 (41%), Gaps = 48/195 (24%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           + FVGPPG+GKT+LA+ +AR     F R + G V  +A              G +   L 
Sbjct: 364 LCFVGPPGVGKTSLAKSIARSTDRPFVRLSLGGVRDEAEIRGHRRTYVGALPGKIIQSLK 423

Query: 102 NLEDRDVLFI-DEIHRLSI--------IVEEILYP----AMEDFQLDLMVGEGPSARSVK 148
            ++  + +FI DE+ ++S+         + E+L P    A  D  LDL            
Sbjct: 424 RVKYNNPVFILDEVDKMSMDFRGDPSAALLEVLDPEQNNAFGDHYLDL-----------D 472

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL---------KTIVQRGAKLT 199
            +LS+   I     +  +  PL+DR  I     + E E           K I Q G    
Sbjct: 473 YDLSKIFFITTANSLHSIPAPLRDRMEIIELPGYLETEKRQIARSFLLPKQIKQHGLTEE 532

Query: 200 GLAVTDEAACEIAMR 214
            L+++D+A  E+  R
Sbjct: 533 NLSLSDDAMLEVIRR 547


>gi|332707482|ref|ZP_08427528.1| membrane protease FtsH catalytic subunit [Lyngbya majuscula 3L]
 gi|332353740|gb|EGJ33234.1| membrane protease FtsH catalytic subunit [Lyngbya majuscula 3L]
          Length = 626

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL VGPPG GKT +A+ VA E GV F S SG    +   G  AA + +L ++       +
Sbjct: 205 VLLVGPPGTGKTLMAKAVAGEAGVPFFSISGSEFVELFVGAGAARVRDLFEQAKKKAPCI 264

Query: 109 LFIDEI 114
           +FIDE+
Sbjct: 265 IFIDEL 270


>gi|320585759|gb|EFW98438.1| aaa family ATPase rvb2 [Grosmannia clavigera kw1407]
          Length = 780

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 38/75 (50%), Gaps = 8/75 (10%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD-- 107
           EA+  +L  GPPG GKT +A+ VA E   NF S  GP +     G+    L  L +R   
Sbjct: 527 EAVGGILLWGPPGCGKTLVAKAVANESKANFISIRGPELLNKYVGESERALRELFERARA 586

Query: 108 ----VLFIDEIHRLS 118
               V+F DE+  L+
Sbjct: 587 MTPCVIFFDEMDALA 601



 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 84/188 (44%), Gaps = 26/188 (13%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLAALLTNLEDRDV------ 108
           VL  GP G GKT +A  +A E    F + SGP I    +G+    + N+ +  +      
Sbjct: 226 VLLYGPSGCGKTLVANAIAAETKAQFFAVSGPEIIGGVSGESEGNIRNIFEAAIRMAPSL 285

Query: 109 LFIDEIHRLSIIVEEILYPAMED-------FQLDLMVGEGPSARSVKINLSRFTLIAATT 161
           +F+D+I  ++   E+    AME+         +D +  E  + ++V        ++AAT+
Sbjct: 286 IFLDDIEAIAGKQEQTAKGAMENRIALTLKKCMDRLQWETEAGKNV-------VVLAATS 338

Query: 162 RVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRI 221
               L   ++ RF I + ++    +  + I+Q+  +   LA  D    EIA   R TP  
Sbjct: 339 DANNLNPLVRQRFDIEVAVSVPSQDAREQILQKMTQDMALA-DDVDLKEIA---RMTPGF 394

Query: 222 AGRLLRRV 229
            G  L+ V
Sbjct: 395 VGSDLKNV 402


>gi|313206080|ref|YP_004045257.1| sigma 54 interacting domain protein [Riemerella anatipestifer DSM
           15868]
 gi|312445396|gb|ADQ81751.1| Sigma 54 interacting domain protein [Riemerella anatipestifer DSM
           15868]
 gi|315023741|gb|EFT36744.1| ATP-dependent Clp protease ATP-binding subunit clpX [Riemerella
           anatipestifer RA-YM]
 gi|325336480|gb|ADZ12754.1| ATP-dependent protease Clp, ATPase subunit, RNA polymerase sigma
           factor 54, interaction [Riemerella anatipestifer RA-GD]
          Length = 390

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           +++ +G  G GKT LA+ +AREL V F      ++ +AG    D+ ++L+ L        
Sbjct: 109 NIIMIGETGTGKTLLAKTIARELNVPFCIVDATILTEAGYVGEDVESILSRLLMVADYDV 168

Query: 104 --EDRDVLFIDEIHRLS 118
              ++ ++FIDEI +++
Sbjct: 169 EKAEKGIVFIDEIDKIA 185


>gi|300857286|ref|YP_003782270.1| ATP-dependent metalloprotease [Clostridium ljungdahlii DSM 13528]
 gi|300437401|gb|ADK17168.1| ATP-dependent metalloprotease [Clostridium ljungdahlii DSM 13528]
          Length = 602

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL VGPPG GKT LA+ ++ E GV F S SG    +   G  A+ + +L D+       +
Sbjct: 197 VLLVGPPGTGKTLLAKAISGEAGVPFFSISGSDFVEMFVGVGASRVRDLFDQAKKNSPCI 256

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 257 VFIDEI 262


>gi|295837282|ref|ZP_06824215.1| cell division protein [Streptomyces sp. SPB74]
 gi|295826448|gb|EDY46884.2| cell division protein [Streptomyces sp. SPB74]
          Length = 685

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 4/58 (6%)

Query: 34  VEACSNLKVFI-EAAKARA---EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VE    +K F+ E AK +A   +    VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 180 VEELQEIKEFLQEPAKFQAVGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISG 237


>gi|291280083|ref|YP_003496918.1| ATP-dependent Lon protease [Deferribacter desulfuricans SSM1]
 gi|290754785|dbj|BAI81162.1| ATP-dependent Lon protease [Deferribacter desulfuricans SSM1]
          Length = 777

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 64/276 (23%), Positives = 108/276 (39%), Gaps = 50/276 (18%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLA 71
           S+++ D++  +    E+  G  E    +  F+   K        +L FVGPPG+GKT+L 
Sbjct: 311 SKDNLDLTHAKKILDEDHYGLKEVKERILEFLAVRKLNPNMKSPILCFVGPPGVGKTSLG 370

Query: 72  QVVARELGVNFRSTS---------------GPVIAKAGDLAALLTNL-EDRDVLFIDEIH 115
           + +AR +G  F   S                 + A  G +   + N   +  V  +DEI 
Sbjct: 371 KSIARAMGRKFHRISLGGMRDEAEIRGHRRTYIGAMPGKIIQGIKNCGTNNPVFMLDEID 430

Query: 116 RL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           ++        S  + E+L P   +  +D  +G       V  +LS+   I     +  + 
Sbjct: 431 KIGMDFRGDPSSALLEVLDPEQNNSFVDHYLG-------VPFDLSKVLFITTANYLDPIP 483

Query: 168 NPLQDRFGIPIRLNFYEIEDL-----KTIVQRGAKLTGLAVTDEAACEIAMRS------- 215
             L+DR  I I +  Y  ED      K ++ R  K  GL  +     + A+         
Sbjct: 484 PALKDRMEI-IYIPGYTEEDKVKIAEKYLIPRQIKENGLKESQIRFTKRAIEKIITGYTR 542

Query: 216 ----RGTPRIAGRLLRR-VRDFAEVAHAKTITREIA 246
               R   R+ G++ R+  R +AE    K +  E A
Sbjct: 543 ESGLRNLERLIGKICRKAARQYAEKRKDKFLINENA 578


>gi|281204261|gb|EFA78457.1| AAA ATPase domain-containing protein [Polysphondylium pallidum
           PN500]
          Length = 907

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ +A E   NF S  GP
Sbjct: 623 VLMYGPPGCGKTLLAKAIASECQANFISVKGP 654



 Score = 37.7 bits (86), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLEDRD--V 108
           +L  GPPG GKT LA  +A EL +   S S P IA          +  L  + +++   +
Sbjct: 294 ILLHGPPGTGKTLLANAIAGELKIPLISISAPEIASGLSGESESKIRGLFASAQEQAPCI 353

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 354 VFIDEI 359


>gi|227501007|ref|ZP_03931056.1| cell division protein FtsH [Anaerococcus tetradius ATCC 35098]
 gi|227216780|gb|EEI82178.1| cell division protein FtsH [Anaerococcus tetradius ATCC 35098]
          Length = 655

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 15/105 (14%)

Query: 25  RTLEEFTGQVEACSNLKVFIE-------AAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +T ++  GQ EA  +L   ++         +  A+    VL VGPPG GKT +A+ VA E
Sbjct: 170 KTFKDVAGQEEAKDSLSEIVDFLHKPGKYKEIGAKVPKGVLLVGPPGTGKTLMAKAVAGE 229

Query: 78  LGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--VLFIDEI 114
             V F S SG    +      A  +  L    +++   ++FIDEI
Sbjct: 230 ANVPFFSISGSEFVEMFVGMGASKVRDLFKQAKEKAPCIVFIDEI 274


>gi|294813244|ref|ZP_06771887.1| Putative cell division protein FtsH [Streptomyces clavuligerus ATCC
           27064]
 gi|294325843|gb|EFG07486.1| Putative cell division protein FtsH [Streptomyces clavuligerus ATCC
           27064]
          Length = 672

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 4/58 (6%)

Query: 34  VEACSNLKVFI-EAAKARA---EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VE    +K F+ E AK +A   +    VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 180 VEELQEIKEFLQEPAKFQAVGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISG 237


>gi|240144375|ref|ZP_04742976.1| ATP-dependent metalloprotease FtsH [Roseburia intestinalis L1-82]
 gi|257203626|gb|EEV01911.1| ATP-dependent metalloprotease FtsH [Roseburia intestinalis L1-82]
          Length = 608

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 202 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 232


>gi|221060450|ref|XP_002260870.1| ATPase [Plasmodium knowlesi strain H]
 gi|193810944|emb|CAQ42842.1| ATPase, putative [Plasmodium knowlesi strain H]
          Length = 1133

 Score = 41.2 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 8/71 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           +L  GPPG  KT  A+ +A E+ +NF S  GP I     G+    + N+  +       V
Sbjct: 748 ILLYGPPGCSKTLFAKAIASEINMNFISVKGPEIFSKYVGESEKTIRNIFKKARENNPCV 807

Query: 109 LFIDEIHRLSI 119
           +F DEI  +++
Sbjct: 808 IFFDEIDSIAV 818


>gi|189203731|ref|XP_001938201.1| replication factor C subunit 4 [Pyrenophora tritici-repentis
          Pt-1C-BFP]
 gi|187985300|gb|EDU50788.1| replication factor C subunit 4 [Pyrenophora tritici-repentis
          Pt-1C-BFP]
          Length = 417

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+TL E T Q      L   ++++      L H+LF GPPG GKT+    +A+EL
Sbjct: 40 RPKTLSEVTAQDNTIQILSRTMQSSN-----LPHMLFYGPPGTGKTSTILALAKEL 90


>gi|156102268|ref|XP_001616827.1| AAA family ATPase [Plasmodium vivax SaI-1]
 gi|148805701|gb|EDL47100.1| AAA family ATPase, putative [Plasmodium vivax]
          Length = 1186

 Score = 41.2 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 8/71 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           +L  GPPG  KT  A+ +A E+ +NF S  GP I     G+    + N+  +       V
Sbjct: 816 ILLYGPPGCSKTLFAKAIASEINMNFISVKGPEIFSKYVGESEKTIRNIFKKARENNPCV 875

Query: 109 LFIDEIHRLSI 119
           +F DEI  +++
Sbjct: 876 IFFDEIDSIAV 886


>gi|148381465|ref|YP_001256006.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A str.
           ATCC 3502]
 gi|153933552|ref|YP_001385840.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A str.
           ATCC 19397]
 gi|153937590|ref|YP_001389247.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A str.
           Hall]
 gi|168180994|ref|ZP_02615658.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum NCTC
           2916]
 gi|226950981|ref|YP_002806072.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A2 str.
           Kyoto]
 gi|148290949|emb|CAL85085.1| cell division protein [Clostridium botulinum A str. ATCC 3502]
 gi|152929596|gb|ABS35096.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A str.
           ATCC 19397]
 gi|152933504|gb|ABS39003.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A str.
           Hall]
 gi|182668051|gb|EDT80030.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum NCTC
           2916]
 gi|226843941|gb|ACO86607.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A2 str.
           Kyoto]
 gi|322807850|emb|CBZ05425.1| cell division protein FtsH [Clostridium botulinum H04402 065]
          Length = 601

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 195 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 225


>gi|146302995|ref|YP_001190311.1| AAA family ATPase [Metallosphaera sedula DSM 5348]
 gi|145701245|gb|ABP94387.1| AAA family ATPase, CDC48 subfamily [Metallosphaera sedula DSM 5348]
          Length = 768

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 24/42 (57%)

Query: 49  ARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           A  E    +L  GPPG GKT LA+ VA E G NF +  GP +
Sbjct: 493 AGVEPPKGILLFGPPGTGKTMLAKAVATESGANFIAVRGPEV 534



 Score = 39.3 bits (90), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 8/77 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL-EDRD-----V 108
           ++  GPPG+GKT LA+ VA E    F S +GP I     G+    L  + ED       +
Sbjct: 228 IMLYGPPGVGKTLLAKAVANETESYFTSINGPEIMSKFYGESEQRLREIFEDAKKHAPAI 287

Query: 109 LFIDEIHRLSIIVEEIL 125
           +FIDE+  ++   +E++
Sbjct: 288 IFIDEVDAIAPKRDEVI 304


>gi|159899548|ref|YP_001545795.1| ATP-dependent metalloprotease FtsH [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159892587|gb|ABX05667.1| ATP-dependent metalloprotease FtsH [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 651

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 35/69 (50%), Gaps = 7/69 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  GQ EA  +L   +E        A+  A     VL VGPPG GKT L++ VA E 
Sbjct: 187 TFADVAGQEEAKQDLTEVVEFLKFPEKFAQLGARIPRGVLMVGPPGTGKTLLSRAVAGEA 246

Query: 79  GVNFRSTSG 87
           GV F S SG
Sbjct: 247 GVPFFSISG 255


>gi|321265444|ref|XP_003197438.1| DNA replication factor [Cryptococcus gattii WM276]
 gi|317463918|gb|ADV25651.1| DNA replication factor, putative [Cryptococcus gattii WM276]
          Length = 373

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 5/60 (8%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +   RP +L++     +    ++ FIEA +     L H+LF GPPG GKT+    +AR L
Sbjct: 57  VEKYRPVSLDDVVSHKDITGTIEKFIEAGR-----LPHLLFYGPPGTGKTSTVLALARRL 111


>gi|331217656|ref|XP_003321506.1| ATPase [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
 gi|309300496|gb|EFP77087.1| ATPase [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
          Length = 368

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-----RSTSGPVIAKAGDLAALLTNLEDR---DV 108
           VL  GPPG GKT LA+ +A+E G  F        S     ++  L A L +L  +    +
Sbjct: 135 VLLYGPPGCGKTMLAKTLAKESGAMFINIKPSDLSSKWFGESSKLVAALFSLSQKLQPSI 194

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 195 IFIDEI 200


>gi|227522410|ref|ZP_03952459.1| M41 family endopeptidase FtsH [Lactobacillus hilgardii ATCC 8290]
 gi|227090468|gb|EEI25780.1| M41 family endopeptidase FtsH [Lactobacillus hilgardii ATCC 8290]
          Length = 717

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           VL  GPPG GKT LA+ VA E GV F S SG    +   G  A+ + +L D+       +
Sbjct: 227 VLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFDQAKKAAPAI 286

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 287 IFIDEI 292


>gi|168183605|ref|ZP_02618269.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum Bf]
 gi|237796986|ref|YP_002864538.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum Ba4 str.
           657]
 gi|182673184|gb|EDT85145.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum Bf]
 gi|229262710|gb|ACQ53743.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum Ba4 str.
           657]
          Length = 601

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 195 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 225


>gi|167533059|ref|XP_001748210.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163773330|gb|EDQ86971.1| predicted protein [Monosiga brevicollis MX1]
          Length = 291

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 8/75 (10%)

Query: 51  AEALDHVLFVGPPGLGKTTLAQVVARELGVNF-----RSTSGPVIAKAGDLAALLTNLED 105
           ++A+  +L  GPPG GKT LA+ VA E G  F      S S     +A  +A  +  L  
Sbjct: 27  SQAVKGLLLFGPPGTGKTMLAKAVATETGATFLNVDSASISSKWYGEAEKMARAVFTLAR 86

Query: 106 R---DVLFIDEIHRL 117
           +    ++FIDEI  L
Sbjct: 87  KLAPTIIFIDEIDSL 101


>gi|120436974|ref|YP_862660.1| hypothetical protein GFO_2637 [Gramella forsetii KT0803]
 gi|117579124|emb|CAL67593.1| conserved hypothetical protein [Gramella forsetii KT0803]
          Length = 1625

 Score = 41.2 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 26/44 (59%)

Query: 48   KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA 91
            + R + +  +L + PPG GKTTL + +A  LG+ F   +GP I 
Sbjct: 1255 QKRTDRMGLLLLISPPGYGKTTLMEYIANRLGLVFMKINGPAIG 1298


>gi|126179507|ref|YP_001047472.1| AAA family ATPase, CDC48 subfamily protein [Methanoculleus
           marisnigri JR1]
 gi|125862301|gb|ABN57490.1| AAA family ATPase, CDC48 subfamily [Methanoculleus marisnigri JR1]
          Length = 808

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 18/81 (22%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR---------- 106
           VL  GPPG GKT +A+ VA E+  +F + SGP I     ++      E+R          
Sbjct: 221 VLLYGPPGTGKTLIAKAVASEVDAHFITLSGPEI-----MSKYYGESEERLREVFEEAQE 275

Query: 107 ---DVLFIDEIHRLSIIVEEI 124
               ++FIDEI  ++   EE+
Sbjct: 276 NAPSIVFIDEIDSIAPKREEV 296



 Score = 39.3 bits (90), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 493 ILLFGPPGTGKTLLAKAVANESESNFISVKGP 524


>gi|58262376|ref|XP_568598.1| DNA replication factor [Cryptococcus neoformans var. neoformans
          JEC21]
 gi|57230772|gb|AAW47081.1| DNA replication factor, putative [Cryptococcus neoformans var.
          neoformans JEC21]
          Length = 327

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 5/63 (7%)

Query: 16 DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
          D  +   RP +L++     +  S ++ FIEA +     L H+L  GPPG GKT+    +A
Sbjct: 8  DDRVEKYRPVSLDDVVSHKDITSTIEKFIEAGR-----LPHLLLYGPPGTGKTSTVLALA 62

Query: 76 REL 78
          R L
Sbjct: 63 RRL 65


>gi|39996908|ref|NP_952859.1| cell division protein FtsH [Geobacter sulfurreducens PCA]
 gi|39983796|gb|AAR35186.1| cell division protein FtsH [Geobacter sulfurreducens PCA]
          Length = 614

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 193 VLLVGPPGTGKTLLARAVAGEAGVPFFSISG 223


>gi|34557037|ref|NP_906852.1| zinc metallopeptidase [Wolinella succinogenes DSM 1740]
 gi|34482752|emb|CAE09752.1| ZINC METALLOPEPTIDASE [Wolinella succinogenes]
          Length = 648

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL------EDRDV 108
           VL VGPPG GKT LA+ VA E  V F S SG    +   G  A+ + +L      E   +
Sbjct: 222 VLLVGPPGTGKTLLAKAVAGEASVPFFSVSGSSFIEMFVGVGASRVRDLFETAKKESPSI 281

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 282 IFIDEI 287


>gi|330835721|ref|YP_004410449.1| AAA family ATPase, CDC48 subfamily protein [Metallosphaera cuprina
           Ar-4]
 gi|329567860|gb|AEB95965.1| AAA family ATPase, CDC48 subfamily protein [Metallosphaera cuprina
           Ar-4]
          Length = 768

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 24/42 (57%)

Query: 49  ARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           A  E    +L  GPPG GKT LA+ VA E G NF +  GP +
Sbjct: 493 AGVEPPKGILLFGPPGTGKTMLAKAVATESGANFIAVRGPEV 534



 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           ++  GPPG+GKT LA+ VA E    F S +GP I
Sbjct: 228 IMLYGPPGVGKTLLAKAVANETESYFTSINGPEI 261


>gi|323357528|ref|YP_004223924.1| ATP-dependent Zn protease [Microbacterium testaceum StLB037]
 gi|323273899|dbj|BAJ74044.1| ATP-dependent Zn protease [Microbacterium testaceum StLB037]
          Length = 670

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 47/104 (45%), Gaps = 15/104 (14%)

Query: 26  TLEEFTGQVEACSNL---KVFIEAAKARAEA----LDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  EA   L   K F++  K   E        VL  GPPG GKT LA+ VA E 
Sbjct: 165 TFQDVAGSDEAIEELDEIKEFLKDPKKFEEVGARIPKGVLLYGPPGTGKTLLARAVAGEA 224

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEI 114
           GV F S SG       V   A  +  L    ++    ++FIDEI
Sbjct: 225 GVPFYSISGSDFVEMFVGVGASRVRDLFNQAKESSPAIIFIDEI 268


>gi|302690912|ref|XP_003035135.1| hypothetical protein SCHCODRAFT_52161 [Schizophyllum commune
          H4-8]
 gi|300108831|gb|EFJ00233.1| hypothetical protein SCHCODRAFT_52161 [Schizophyllum commune
          H4-8]
          Length = 376

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 7/64 (10%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL--GV 80
          RP+T+++ + Q    S L+  + +       L H+LF GPPG GKT+    ++R+L    
Sbjct: 36 RPKTIDDVSAQEHTVSVLQKALTSTN-----LPHMLFYGPPGTGKTSTILALSRQLFGPD 90

Query: 81 NFRS 84
          NFRS
Sbjct: 91 NFRS 94


>gi|257468339|ref|ZP_05632433.1| ATP-dependent protease ATP-binding subunit ClpX [Fusobacterium
           ulcerans ATCC 49185]
 gi|317062613|ref|ZP_07927098.1| ATP-dependent Clp protease ATP-binding subunit clpX [Fusobacterium
           ulcerans ATCC 49185]
 gi|313688289|gb|EFS25124.1| ATP-dependent Clp protease ATP-binding subunit clpX [Fusobacterium
           ulcerans ATCC 49185]
          Length = 416

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           +VL +GP G GKT LAQ +AR L V F       + +AG    D+  +L  L        
Sbjct: 115 NVLLIGPTGSGKTLLAQTLARCLSVPFAIADATTLTEAGYVGDDVENVLVRLLQAADYDV 174

Query: 104 --EDRDVLFIDEIHRLS 118
              +R +++IDEI +++
Sbjct: 175 DAAERGIIYIDEIDKIA 191


>gi|170760265|ref|YP_001788865.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169407254|gb|ACA55665.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 601

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 195 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 225


>gi|170755847|ref|YP_001783165.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum B1 str.
           Okra]
 gi|169121059|gb|ACA44895.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum B1 str.
           Okra]
          Length = 601

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 195 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 225


>gi|251798422|ref|YP_003013153.1| Fis family transcriptional regulator [Paenibacillus sp. JDR-2]
 gi|247546048|gb|ACT03067.1| Sigma 54 interacting domain protein [Paenibacillus sp. JDR-2]
          Length = 567

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 5/75 (6%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           R+VS         RP+ +++  GQ +    LK  + +A  +     HV+  GPPG+GKT 
Sbjct: 51  RSVSLTKPLAEKTRPQAMQDIVGQTDGLRALKAALCSANPQ-----HVIIYGPPGVGKTA 105

Query: 70  LAQVVARELGVNFRS 84
            A+VV  E   N  S
Sbjct: 106 AARVVLEEAKKNPSS 120


>gi|254302055|ref|ZP_04969413.1| DNA-directed DNA polymerase III gamma and tau subunit
           [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
 gi|148322247|gb|EDK87497.1| DNA-directed DNA polymerase III gamma and tau subunit
           [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
          Length = 484

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 112/248 (45%), Gaps = 35/248 (14%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP +  E +G+ E   +LK+ ++  K+ A A    LF GP G+GKTT+A+++A+  GVN 
Sbjct: 10  RPSSFSEVSGENEIVKSLKLSLKN-KSMAHAY---LFSGPRGVGKTTIARLIAK--GVNC 63

Query: 83  RS--TSGPVIAKAGDLAAL-------LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
            +   +G    +  +  A+       L  ++      IDEI  L    E+I Y  +E  +
Sbjct: 64  LNLKENGEPCNECKNCKAINEGRFSDLIEIDAASNRSIDEIRSLK---EKINYQPVEGLK 120

Query: 134 LDLMVGEGPSARSVKINLSRFTL---------IAATTRVGLLTNPLQDRFGIPIRLNF-- 182
              ++ E         N    TL         I ATT +  +   +  R     R +F  
Sbjct: 121 KVYIIDEAHMLTKEAFNALLKTLEEPPAHVMFILATTELEKILPTIISRCQ---RYDFKP 177

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            ++E++K+ ++   K   L++TD+    I   S G+ R +  +L R+      A+ K I 
Sbjct: 178 LDLEEMKSGLEHILKEENLSMTDDVYPVIYENSSGSMRDSISILERL---IVTANGKEID 234

Query: 243 REIADAAL 250
            +IA+  L
Sbjct: 235 LKIAEDTL 242


>gi|121534993|ref|ZP_01666811.1| peptidase S16, lon domain protein [Thermosinus carboxydivorans
           Nor1]
 gi|121306406|gb|EAX47330.1| peptidase S16, lon domain protein [Thermosinus carboxydivorans
           Nor1]
          Length = 644

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 5/59 (8%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           + L+RP +L E  GQ  A   L+     AK  +    H++  GPPG+GKTT A++V  E
Sbjct: 169 MELVRPASLAEIVGQERAIEALR-----AKLASPYPQHLIIYGPPGVGKTTAARLVLEE 222


>gi|28278099|gb|AAH45087.1| Psmc6 protein [Xenopus laevis]
          Length = 403

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 56/124 (45%), Gaps = 23/124 (18%)

Query: 8   LSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV--------L 58
           L  N+S ED  D+S        E  G  E    L+  IE      E    V        L
Sbjct: 132 LVYNMSHEDPGDVSY------SEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCL 185

Query: 59  FVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA-GDLAALLTNLED--RD----VLF 110
             GPPG GKT LA+ VA +L  NF +  S  ++ K  G+ A L+  + +  RD    ++F
Sbjct: 186 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIF 245

Query: 111 IDEI 114
           +DEI
Sbjct: 246 MDEI 249


>gi|85057694|ref|YP_456610.1| ATP-dependent Zn protease [Aster yellows witches'-broom phytoplasma
           AYWB]
 gi|84789799|gb|ABC65531.1| ATP-dependent Zn protease [Aster yellows witches'-broom phytoplasma
           AYWB]
          Length = 417

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 74/157 (47%), Gaps = 12/157 (7%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL  GPPG GKT LA+ +A E  V F + SG    +   G  A+ + +L  +       +
Sbjct: 211 VLLEGPPGTGKTLLAKALANEAKVPFYAVSGSEFVEIYVGVGASRIRDLFQKAKTTTPCI 270

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +FIDEI  L    +    P +E  + D  + +          LS+  +IAAT R+ +L  
Sbjct: 271 IFIDEIDTLG--AKRKNNPIIESREHDQSLNQLLLEMDGFFKLSQIIIIAATNRIDMLDP 328

Query: 169 PL--QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAV 203
            L    RF   I++N   ++  + I++  AK   +++
Sbjct: 329 ALIRPGRFDRKIKINLPNLKAREAILKVHAKNKNISL 365


>gi|332707340|ref|ZP_08427390.1| membrane protease FtsH catalytic subunit [Lyngbya majuscula 3L]
 gi|332353831|gb|EGJ33321.1| membrane protease FtsH catalytic subunit [Lyngbya majuscula 3L]
          Length = 597

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 177 VLLVGPPGTGKTLLARAVAGEAGVPFFSISG 207


>gi|328703928|ref|XP_001944185.2| PREDICTED: chromosome transmission fidelity protein 18 homolog
           [Acyrthosiphon pisum]
          Length = 926

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 17/24 (70%), Positives = 19/24 (79%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVN 81
           L  GPPGLGKTTLA +VAR+ G N
Sbjct: 354 LLCGPPGLGKTTLAHLVARQAGYN 377


>gi|325291428|ref|YP_004267609.1| Sigma 54 interacting domain protein [Syntrophobotulus glycolicus
           DSM 8271]
 gi|324966829|gb|ADY57608.1| Sigma 54 interacting domain protein [Syntrophobotulus glycolicus
           DSM 8271]
          Length = 640

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 35/68 (51%), Gaps = 6/68 (8%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           I +LRP+  EE  GQ  A   L      AK       H+L  GPPG+GKT+ A+ VA E 
Sbjct: 175 IDVLRPKRPEEIVGQENAMRGL-----LAKLATPYPQHILIYGPPGVGKTSAAR-VALET 228

Query: 79  GVNFRSTS 86
              F++ S
Sbjct: 229 VKQFKNAS 236


>gi|310820095|ref|YP_003952453.1| ATP-dependent CLP protease, ATP-binding subunit CLPx [Stigmatella
           aurantiaca DW4/3-1]
 gi|309393167|gb|ADO70626.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Stigmatella
           aurantiaca DW4/3-1]
          Length = 425

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 57/133 (42%), Gaps = 29/133 (21%)

Query: 15  EDADISLLRPRTL-----EEFTGQVEACSNLKVFIEAAKARAEAL----------DHVLF 59
           +D  I + RP  +     E   GQ  A   L V +     R E+            ++L 
Sbjct: 59  KDTKIRIPRPSEIKSILDEYVVGQDRAKKVLSVAVHNHYKRIESKVQMDDVELQKSNILL 118

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL----------ED 105
           +GP G GKT LAQ +AR L V F       + +AG    D+  ++ NL            
Sbjct: 119 LGPTGSGKTLLAQTLARILNVPFTIADATCLTEAGYVGEDVENIIVNLLQAADHDIERAQ 178

Query: 106 RDVLFIDEIHRLS 118
           R +++IDEI +++
Sbjct: 179 RGIVYIDEIDKIA 191


>gi|284165841|ref|YP_003404120.1| ATPase AAA [Haloterrigena turkmenica DSM 5511]
 gi|284015496|gb|ADB61447.1| AAA family ATPase, CDC48 subfamily [Haloterrigena turkmenica DSM
           5511]
          Length = 754

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 23/34 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL  GPPG GKT +A+ VA E+  +F + SGP I
Sbjct: 228 VLLHGPPGTGKTLMAKAVANEIDAHFETISGPEI 261



 Score = 40.4 bits (93), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 20/37 (54%), Positives = 22/37 (59%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +A   VL  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 496 QAAKGVLMYGPPGTGKTLLAKAVANEAQSNFISIKGP 532


>gi|282850556|ref|ZP_06259935.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Veillonella
           parvula ATCC 17745]
 gi|282580049|gb|EFB85453.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Veillonella
           parvula ATCC 17745]
          Length = 417

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           +VLF+GP G GKT LAQ +A+ L V F       + +AG +   + N+            
Sbjct: 110 NVLFIGPTGSGKTLLAQTLAKMLEVPFAIADATSLTEAGYVGEDVENILLKIIQAADYDI 169

Query: 104 --EDRDVLFIDEIHRLS 118
              +R +++IDEI +++
Sbjct: 170 ARAERGIIYIDEIDKIA 186


>gi|323340114|ref|ZP_08080379.1| cell division protein FtsH [Lactobacillus ruminis ATCC 25644]
 gi|323092491|gb|EFZ35098.1| cell division protein FtsH [Lactobacillus ruminis ATCC 25644]
          Length = 719

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108
           VL  GPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 237 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPSI 296

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 297 IFIDEI 302


>gi|229819199|ref|YP_002880725.1| ATP-dependent metalloprotease FtsH [Beutenbergia cavernae DSM
           12333]
 gi|229565112|gb|ACQ78963.1| ATP-dependent metalloprotease FtsH [Beutenbergia cavernae DSM
           12333]
          Length = 684

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 48/91 (52%), Gaps = 7/91 (7%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFI-EAAKARA---EALDH 56
           MM+     +R V+ E+ +++      ++E    VE    +K F+ E AK +A   +    
Sbjct: 148 MMNFGKSKARQVNVENPEVTFADVAGVDE---AVEELVEIKEFLSEPAKFQAVGAKIPKG 204

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT +A+ VA E GV F S SG
Sbjct: 205 VLLYGPPGTGKTLIARAVAGEAGVPFYSISG 235


>gi|218289109|ref|ZP_03493345.1| AAA ATPase central domain protein [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218240692|gb|EED07871.1| AAA ATPase central domain protein [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 329

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 78/181 (43%), Gaps = 37/181 (20%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI-AKAGDLAALL---TNLEDRD---- 107
           H++F G PG GKTT+A+++AR          G ++  +  DL       T  + R+    
Sbjct: 105 HMIFYGNPGTGKTTVARILARMFHECGLLEKGHLVEVERADLVGEYIGHTAQKTREQIQK 164

Query: 108 ----VLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLSRFT 155
               VLFIDE + L+   E        + L  AMED + +L+V      R ++  LS   
Sbjct: 165 ALGGVLFIDEAYSLARGGEKDFGREAIDCLVKAMEDHKHELIVILAGYEREMRWFLS--- 221

Query: 156 LIAATTRVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMR 214
                      TNP L  RF I I    Y +E L  I ++        +T EA  E A+R
Sbjct: 222 -----------TNPGLPSRFPIQILFPDYGVEQLVQIAKKTLATRDYRMTAEA--EWALR 268

Query: 215 S 215
           +
Sbjct: 269 N 269


>gi|91761999|ref|ZP_01263964.1| ATP-dependent clp proteinase regulatory chain X [Candidatus
           Pelagibacter ubique HTCC1002]
 gi|91717801|gb|EAS84451.1| ATP-dependent clp proteinase regulatory chain X [Candidatus
           Pelagibacter ubique HTCC1002]
          Length = 422

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L VGP G GKT LAQ +AR L V F       + +AG +   + N+            
Sbjct: 110 NILLVGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNV 169

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDE+ ++S
Sbjct: 170 EKAQRGIVYIDEVDKIS 186


>gi|86607354|ref|YP_476117.1| cell division protein FtsH [Synechococcus sp. JA-3-3Ab]
 gi|86555896|gb|ABD00854.1| cell division protein FtsH [Synechococcus sp. JA-3-3Ab]
          Length = 638

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 205 VLLVGPPGTGKTLLARAVAGEAGVPFFSISG 235


>gi|46579748|ref|YP_010556.1| ATP-dependent protease La [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|81830450|sp|Q72CE6|LON_DESVH RecName: Full=Lon protease; AltName: Full=ATP-dependent protease La
 gi|46449163|gb|AAS95815.1| ATP-dependent protease La [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311233538|gb|ADP86392.1| ATP-dependent protease La [Desulfovibrio vulgaris RCH1]
          Length = 821

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 89/228 (39%), Gaps = 67/228 (29%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           +  VGPPG+GKT+LA+ VA+  G  F R + G V  +A              G +   L 
Sbjct: 364 LCLVGPPGVGKTSLAKSVAKATGREFVRLSLGGVRDEAEIRGHRRTYVGALPGKIIQSLK 423

Query: 102 NLEDRDVLF-IDEIHRLSI--------IVEEILYP----AMEDFQLDLMVGEGPSARSVK 148
            ++  + LF +DEI ++S          + E+L P       D  LD+            
Sbjct: 424 RVKHNNPLFCLDEIDKMSTDFRGDPSSALLEVLDPEQNSTFNDHYLDM-----------D 472

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY-EIEDL---------KTIVQRGAKL 198
            +LS+   I     +  +  PLQDR  I IRL  Y E E           K +   G   
Sbjct: 473 YDLSQVFFITTANSLHSIPLPLQDRMEI-IRLPGYLETEKRRIAHDFLLPKQVEAHGLAA 531

Query: 199 TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           + L ++D A  EI                 +R +   A  + + REIA
Sbjct: 532 SNLRISDNAVLEI-----------------IRSYTREAGVRNLEREIA 562


>gi|20090664|ref|NP_616739.1| hypothetical protein MA1813 [Methanosarcina acetivorans C2A]
 gi|19915711|gb|AAM05219.1| hypothetical protein MA_1813 [Methanosarcina acetivorans C2A]
          Length = 764

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 33/71 (46%), Gaps = 8/71 (11%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARELG 79
           E+  G  +A S ++  IE      E  D         VL  GPPG GKT LA+ VA E  
Sbjct: 216 EDLGGLKDAISKVREMIELPLKHPELFDRLGIDAPKGVLLQGPPGTGKTMLAKAVANESD 275

Query: 80  VNFRSTSGPVI 90
             F S +GP I
Sbjct: 276 AYFISINGPEI 286



 Score = 38.1 bits (87), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 20/83 (24%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR----- 106
           EA   VL  GPPG GKT LA+ +A E   NF      + AK  DL +      ++     
Sbjct: 521 EAPKGVLLYGPPGTGKTLLAKAIAHESDANF------ITAKGSDLLSKWYGESEKRIAEV 574

Query: 107 ---------DVLFIDEIHRLSII 120
                     ++F+DE+  L+ I
Sbjct: 575 FTRARQVAPSIIFLDELDSLAPI 597


>gi|331701915|ref|YP_004398874.1| ATP-dependent metalloprotease FtsH [Lactobacillus buchneri NRRL
           B-30929]
 gi|329129258|gb|AEB73811.1| ATP-dependent metalloprotease FtsH [Lactobacillus buchneri NRRL
           B-30929]
          Length = 711

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           VL  GPPG GKT LA+ VA E GV F S SG    +   G  A+ + +L D+       +
Sbjct: 226 VLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFDQAKKAAPAI 285

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 286 IFIDEI 291


>gi|330807699|ref|YP_004352161.1| ATP-dependent protease [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327375807|gb|AEA67157.1| ATP-dependent protease [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 804

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 70/166 (42%), Gaps = 40/166 (24%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAKAGDLAALLT 101
           VL VGPPG+GKT++ + +A  LG  F   S                 + A+ G L   L 
Sbjct: 386 VLLVGPPGVGKTSVGKSIAESLGRPFYRFSLGGMRDEAEIKGHRRTYIGAQPGKLVQALK 445

Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAME----DFQLDLMVGEGPSARSVK 148
           ++E  + V+ +DEI ++    +        E L P       D  LDL           +
Sbjct: 446 DVEVMNPVIMLDEIDKMGQSYQGDPASALLETLDPEQNVEFLDHYLDL-----------R 494

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           ++LS+   +     +  +  PL DR  + IRL+ Y  E+   I +R
Sbjct: 495 LDLSKVLFVCTANTLDSIPGPLLDRMEV-IRLSGYITEEKVAIAKR 539


>gi|313114092|ref|ZP_07799644.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310623501|gb|EFQ06904.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 440

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 28/132 (21%)

Query: 15  EDADISLLRPRTLEE-----FTGQVEACSNLKVFIEAAKAR---AEALD------HVLFV 60
           ++ DI++L P  ++E       GQ EA   L V +     R    +  D      +VL +
Sbjct: 75  DNLDINILTPAEIKEGLDQYVIGQDEAKRVLAVSVYNHYKRILSGKGSDVELQKSNVLLL 134

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---EDRDV----- 108
           GP G+GKT LAQ +A+ LGV F       + +AG    D+  +L  L    D DV     
Sbjct: 135 GPSGVGKTLLAQTLAKMLGVPFAIADATTLTEAGYVGEDVENILLKLIQAADFDVQKAQI 194

Query: 109 --LFIDEIHRLS 118
             ++IDEI +++
Sbjct: 195 GIIYIDEIDKIT 206


>gi|260203078|ref|ZP_05770569.1| hypothetical protein MtubK8_01992 [Mycobacterium tuberculosis K85]
 gi|289572521|ref|ZP_06452748.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289536952|gb|EFD41530.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
          Length = 573

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 14/78 (17%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEE------FTGQVEACSNLKVFIEAAKARAEALDHV 57
           RE LL++  ++ D  I L R +   E         +V A   +KV        A+   H+
Sbjct: 279 RERLLAQAQAELDRQIGLTRVKNQIERYRAATLMARVRAAKGMKV--------AQPSKHM 330

Query: 58  LFVGPPGLGKTTLAQVVA 75
           +F GPPG GKTT+A+VVA
Sbjct: 331 IFTGPPGTGKTTIARVVA 348


>gi|238923370|ref|YP_002936886.1| ATP-dependent protease ATP-binding subunit [Eubacterium rectale
           ATCC 33656]
 gi|259491258|sp|C4ZGF5|CLPX_EUBR3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238875045|gb|ACR74752.1| ATP-dependent protease ATP-binding subunit [Eubacterium rectale
           ATCC 33656]
          Length = 423

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 61/135 (45%), Gaps = 28/135 (20%)

Query: 18  DISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEALD---------HVLFVGPP 63
           DI+L+ P  L+ F      GQ +A   L V +     R  A D         ++L +GP 
Sbjct: 62  DINLVTPEELKAFLDDYVIGQDQAKKVLSVAVYNHYKRVLAGDTSDVELQKSNILMLGPT 121

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---EDRD-------VL 109
           G GKT LAQ +AR + V F       + +AG    D+  +L  L    D D       ++
Sbjct: 122 GSGKTLLAQTLARVINVPFAIADATTLTEAGYVGEDVENILLKLIQAADYDIERAEHGII 181

Query: 110 FIDEIHRLSIIVEEI 124
           +IDEI +++   E +
Sbjct: 182 YIDEIDKITKKSENV 196


>gi|221636295|ref|YP_002524171.1| cell division protein FtsH [Thermomicrobium roseum DSM 5159]
 gi|221157985|gb|ACM07103.1| cell division protein FtsH [Thermomicrobium roseum DSM 5159]
          Length = 632

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 44/103 (42%), Gaps = 15/103 (14%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFR 83
           P  LE     V     +K F E      EA+  +L VGPPG GK+ LAQ ++ E  V F 
Sbjct: 120 PEVLESARRIVTLLKGIKEFKEMG---GEAIRGLLLVGPPGTGKSYLAQCISTEANVPFG 176

Query: 84  STSGPVIAK----AGDLAALLTNLEDRD--------VLFIDEI 114
             S P          +L  ++   + R         +LFIDEI
Sbjct: 177 YASAPSFQNMFFGVSNLRIMMLYRKARKLARKYGACILFIDEI 219


>gi|242279265|ref|YP_002991394.1| ATP-dependent metalloprotease FtsH [Desulfovibrio salexigens DSM
           2638]
 gi|242122159|gb|ACS79855.1| ATP-dependent metalloprotease FtsH [Desulfovibrio salexigens DSM
           2638]
          Length = 689

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 192 VLLVGPPGTGKTLLARAVAGEAGVPFFSISG 222


>gi|241997548|ref|XP_002433423.1| katanin, putative [Ixodes scapularis]
 gi|215490846|gb|EEC00487.1| katanin, putative [Ixodes scapularis]
          Length = 495

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108
           VL VGPPG GKT LA+ VA E G  F + S   +     G+   L      +        
Sbjct: 252 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFHAPST 311

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 312 IFIDEIDSL 320


>gi|254169220|ref|ZP_04876054.1| AAA family ATPase, CDC48 subfamily [Aciduliprofundum boonei T469]
 gi|289596750|ref|YP_003483446.1| AAA family ATPase, CDC48 subfamily [Aciduliprofundum boonei T469]
 gi|197621816|gb|EDY34397.1| AAA family ATPase, CDC48 subfamily [Aciduliprofundum boonei T469]
 gi|289534537|gb|ADD08884.1| AAA family ATPase, CDC48 subfamily [Aciduliprofundum boonei T469]
          Length = 738

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 16/121 (13%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLA 71
            LL   T E+  G  +    ++  IE      E  +         VL  GPPG GKT +A
Sbjct: 180 ELLEHVTYEDIGGLKDELQKVREMIELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLIA 239

Query: 72  QVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEE 123
           + VA E   +F + +GP I           L  +  N +     ++FIDEI  ++   EE
Sbjct: 240 KAVANESNAHFYAINGPEIMSKFYGQSEERLREIFQNAQKNAPSIIFIDEIDSIAPKREE 299

Query: 124 I 124
           +
Sbjct: 300 V 300



 Score = 39.3 bits (90), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT LA+ VA E   NF S  GP +
Sbjct: 502 ILLYGPPGTGKTLLAKAVATESEANFISIKGPEV 535


>gi|163759317|ref|ZP_02166403.1| ATP-dependent Clp protease, ATP-binding subunit protein [Hoeflea
           phototrophica DFL-43]
 gi|162283721|gb|EDQ34006.1| ATP-dependent Clp protease, ATP-binding subunit protein [Hoeflea
           phototrophica DFL-43]
          Length = 426

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 25/118 (21%)

Query: 26  TLEEFT-GQVEACSNLKVFIEAAKARAE----------ALDHVLFVGPPGLGKTTLAQVV 74
           TL+E+  GQ +A   L V +     R            A  ++L VGP G GKT LAQ +
Sbjct: 75  TLDEYVIGQHQAKKILSVAVHNHYKRLNHSSKSGEVELAKSNILLVGPTGCGKTYLAQTL 134

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNL--------------EDRDVLFIDEIHRLS 118
           AR + V F       + +AG +   + N+                R +++IDE+ ++S
Sbjct: 135 ARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVERAQRGIVYIDEVDKIS 192


>gi|145296692|ref|YP_001139513.1| hypothetical protein cgR_2597 [Corynebacterium glutamicum R]
 gi|140846612|dbj|BAF55611.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 853

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 32/70 (45%), Positives = 35/70 (50%), Gaps = 9/70 (12%)

Query: 26  TLEEFTGQVEACSNL---KVFIEAAKARAEALDH-----VLFVGPPGLGKTTLAQVVARE 77
           T  +  G  EA   L   K F+E    R EAL       VL  GPPG GKT LA+ VA E
Sbjct: 163 TFADVAGAEEAVDELHEIKDFLEDP-TRYEALGAKIPRGVLLYGPPGTGKTLLARAVAGE 221

Query: 78  LGVNFRSTSG 87
            GV F S SG
Sbjct: 222 AGVPFYSISG 231


>gi|68076493|ref|XP_680166.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56501060|emb|CAH98427.1| conserved hypothetical protein [Plasmodium berghei]
          Length = 931

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG  KT  A+ +A E+ +NF S  GP I
Sbjct: 621 ILLYGPPGCSKTLFAKAIASEINMNFISVKGPEI 654


>gi|150388894|ref|YP_001318943.1| ATP-dependent protease La [Alkaliphilus metalliredigens QYMF]
 gi|149948756|gb|ABR47284.1| ATP-dependent protease La [Alkaliphilus metalliredigens QYMF]
          Length = 783

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 78/174 (44%), Gaps = 37/174 (21%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           V  VGPPG+GKT++A+ +AR L   F R + G V  +A              G + + + 
Sbjct: 356 VCLVGPPGVGKTSIAKSIARSLNRKFVRMSLGGVRDEAEIRGHRRTYVGAIPGRIISSMR 415

Query: 102 NLEDRDVLF-IDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152
            +E ++ LF +DEI +L        +  + E+L P   D   D  + E P       +LS
Sbjct: 416 QVESKNPLFLLDEIDKLAGDFRGDPAAALLEVLDPEQNDDFTDHYL-EMP------FDLS 468

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL-----KTIVQRGAKLTGL 201
           +   I     +  +  PL DR  + IR+  Y  E+      K +V +  K+ GL
Sbjct: 469 KVLFITTANSLDTIPRPLLDRMEV-IRIAGYTEEEKVKIAEKYLVPKQLKVHGL 521


>gi|114331375|ref|YP_747597.1| ATP-dependent metalloprotease FtsH [Nitrosomonas eutropha C91]
 gi|114308389|gb|ABI59632.1| membrane protease FtsH catalytic subunit [Nitrosomonas eutropha
           C91]
          Length = 617

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           +L VGPPG GKT LA+ VA E GV F S SG    +   G  AA + +L ++       +
Sbjct: 199 ILLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEMFVGVGAARVRDLFEQARQMAPAI 258

Query: 109 LFIDEIHRL 117
           +FIDE+  L
Sbjct: 259 IFIDELDAL 267


>gi|159107696|ref|XP_001704125.1| ATPase, AAA family [Giardia lamblia ATCC 50803]
 gi|157432177|gb|EDO76451.1| ATPase, AAA family [Giardia lamblia ATCC 50803]
          Length = 509

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 14/140 (10%)

Query: 14  QEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARA---EALDHVLFVGPPGLGKTT 69
           QE   +S+ LRP T++E  G     S     I     ++     L  ++  GPPG GKT+
Sbjct: 92  QEAMCLSMRLRPTTIDEIIGNHHILSLTDGVISRIYEQSRTTHVLQSIIITGPPGTGKTS 151

Query: 70  LAQVVARELGVNFRSTS-GPVIAKAGDLAALLTNL---------EDRDVLFIDEIHRLSI 119
            A++ A+    ++R     P  A   +L  +   +           R  LF+DE HR + 
Sbjct: 152 FARLYAKSFDPSYRLIEFKPGQATVAELNKVTERIYTDRANSLTSARVCLFVDEAHRCTK 211

Query: 120 IVEEILYPAMEDFQLDLMVG 139
             ++ L  A+E+  L L++ 
Sbjct: 212 AQQDRLLSAVEEGVLTLILA 231


>gi|325115165|emb|CBZ50721.1| putative replication factor c subunit [Neospora caninum Liverpool]
          Length = 347

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 54/242 (22%), Positives = 98/242 (40%), Gaps = 50/242 (20%)

Query: 5   EGLLSRNVSQEDADISLL--------RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH 56
           E L   N  +EDA  + L        RP TL++  G  +    L++      A+   + H
Sbjct: 9   ENLPPDNRGKEDASPTTLDSIWIEKYRPETLDDVVGNDQVMRRLRII-----AKEGNMPH 63

Query: 57  VLFVGPPGLGKTTLAQVVARE-LGVNFRSTSGPVIAKAGDLAALLTN------LEDRD-- 107
           ++  GPPG GKT+    + ++ LG  +R+ +  + A       ++         E RD  
Sbjct: 64  LMLAGPPGTGKTSSVLCLCKQLLGSRWRACTLELNASDERTIDVIREKVKHFAKEKRDLP 123

Query: 108 -----VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTR 162
                ++ +DE+  ++   ++ L   ME F                 + +RF L  A   
Sbjct: 124 PGRHKIVILDEVDAMTEAAQQALRRIMEQFS----------------DTTRFAL--ACNS 165

Query: 163 VGLLTNPLQDRFGIPIRLNFYEIEDLKTI--VQRGAKLTGLAVTDEAACEIAMRSRGTPR 220
              +  PLQ R  I   L F +++D + +  +++   +  + VTD+    I   + G  R
Sbjct: 166 SASVIEPLQSRCAI---LRFRKLDDAQLVRRLRQVCSMEAVQVTDDGMEAIVFCADGDMR 222

Query: 221 IA 222
            A
Sbjct: 223 SA 224


>gi|300121635|emb|CBK22153.2| unnamed protein product [Blastocystis hominis]
          Length = 441

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRS-TSGPVIAK-AGDLAALLTNL------EDRDV 108
           +L  GPPG GK+ LA+ VA +    F S +S  +++K  G+ A L+ NL          V
Sbjct: 177 ILLYGPPGTGKSYLAKAVASQADSTFMSVSSADLVSKWQGETARLVKNLFQLARKNKPTV 236

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 237 IFIDEIDSL 245


>gi|298505921|gb|ADI84644.1| cell division ATP-dependent zinc protease FtsH [Geobacter
           sulfurreducens KN400]
          Length = 610

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 189 VLLVGPPGTGKTLLARAVAGEAGVPFFSISG 219


>gi|259488300|tpe|CBF87639.1| TPA: AAA family ATPase/60S ribosome export protein Rix7, putative
           (AFU_orthologue; AFUA_1G09210) [Aspergillus nidulans
           FGSC A4]
          Length = 729

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDL-AALLTNLEDRD-----V 108
           VL  GPPG GKT +A   A ELGV F S S P I    +G+   AL  + E+       +
Sbjct: 202 VLLHGPPGCGKTMIANAFAAELGVPFISISAPSIVSGMSGESEKALREHFEEAKRLAPCL 261

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 262 IFIDEIDAIT 271



 Score = 40.0 bits (92), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 506 VLLWGPPGCGKTLLAKAVANESRANFISVKGP 537


>gi|253581497|ref|ZP_04858722.1| ATP-dependent protease ATP-binding subunit [Fusobacterium varium
           ATCC 27725]
 gi|251836567|gb|EES65102.1| ATP-dependent protease ATP-binding subunit [Fusobacterium varium
           ATCC 27725]
          Length = 416

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           +VL +GP G GKT LAQ +AR L V F       + +AG    D+  +L  L        
Sbjct: 115 NVLLIGPTGSGKTLLAQTLARCLSVPFAIADATTLTEAGYVGDDVENVLVRLLQAADYDV 174

Query: 104 --EDRDVLFIDEIHRLS 118
              +R +++IDEI +++
Sbjct: 175 EAAERGIIYIDEIDKIA 191


>gi|291087305|ref|ZP_06346033.2| ATP-dependent metalloprotease FtsH [Clostridium sp. M62/1]
 gi|291075290|gb|EFE12654.1| ATP-dependent metalloprotease FtsH [Clostridium sp. M62/1]
          Length = 597

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 179 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 209


>gi|223974153|gb|ACN31264.1| unknown [Zea mays]
          Length = 234

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRD 107
           K +   +D +L+ GPPG GK++L   +A  L  +        +    DL  LL N+++R 
Sbjct: 126 KLKQSIIDDLLY-GPPGTGKSSLIAAMANHLRFDIYDLELTAVTSNSDLRRLLVNMDNRS 184

Query: 108 VLFIDEI 114
           +L I++I
Sbjct: 185 ILVIEDI 191


>gi|260822034|ref|XP_002606408.1| hypothetical protein BRAFLDRAFT_67659 [Branchiostoma floridae]
 gi|229291749|gb|EEN62418.1| hypothetical protein BRAFLDRAFT_67659 [Branchiostoma floridae]
          Length = 997

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 79/187 (42%), Gaps = 32/187 (17%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLA 71
           S+E+ D++  R    E+  G  +  + +  FI  ++ R      +L F GPPG+GKT++A
Sbjct: 526 SEENLDLARARAVLEEDHYGMDDVKNRILEFIAVSQLRGSVQGKILCFYGPPGVGKTSIA 585

Query: 72  QVVARELGVN-FRSTSGP--------------VIAKAGDLAALLTNLEDRDVL-FIDEIH 115
           + +AR L    FR + G               V A  G +   L   +  + L  IDE+ 
Sbjct: 586 RSIARALSREYFRFSVGGMTDVAEIKGHRRTYVGAMPGKVIQCLKKTKTENPLVLIDEVD 645

Query: 116 RL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           ++        S  + E+L P      LD  +        V ++LS+   I     +  + 
Sbjct: 646 KIGRGYQGDPSSALLELLDPEQNANFLDHYL-------DVSVDLSKVLFICTANIIDTIP 698

Query: 168 NPLQDRF 174
            PL+DR 
Sbjct: 699 EPLRDRM 705


>gi|254169043|ref|ZP_04875881.1| AAA family ATPase, CDC48 subfamily [Aciduliprofundum boonei T469]
 gi|197622013|gb|EDY34590.1| AAA family ATPase, CDC48 subfamily [Aciduliprofundum boonei T469]
          Length = 738

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 16/121 (13%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLA 71
            LL   T E+  G  +    ++  IE      E  +         VL  GPPG GKT +A
Sbjct: 180 ELLEHVTYEDIGGLKDELQKVREMIELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLIA 239

Query: 72  QVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEE 123
           + VA E   +F + +GP I           L  +  N +     ++FIDEI  ++   EE
Sbjct: 240 KAVANESNAHFYAINGPEIMSKFYGQSEERLREIFQNAQKNAPSIIFIDEIDSIAPKREE 299

Query: 124 I 124
           +
Sbjct: 300 V 300



 Score = 39.3 bits (90), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT LA+ VA E   NF S  GP +
Sbjct: 502 ILLYGPPGTGKTLLAKAVATESEANFISIKGPEV 535


>gi|220907269|ref|YP_002482580.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7425]
 gi|219863880|gb|ACL44219.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7425]
          Length = 612

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 193 VLLVGPPGTGKTLLARAVAGEAGVPFFSISG 223


>gi|187777493|ref|ZP_02993966.1| hypothetical protein CLOSPO_01068 [Clostridium sporogenes ATCC
           15579]
 gi|187774421|gb|EDU38223.1| hypothetical protein CLOSPO_01068 [Clostridium sporogenes ATCC
           15579]
          Length = 601

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 195 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 225


>gi|218440504|ref|YP_002378833.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7424]
 gi|218173232|gb|ACK71965.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7424]
          Length = 616

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 197 VLLVGPPGTGKTLLARAVAGEAGVPFFSISG 227


>gi|134283372|ref|ZP_01770072.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 305]
 gi|134245121|gb|EBA45215.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 305]
          Length = 666

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 8/72 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL VG PG GKT LA+ VA E GV F STSG    +   G  AA + +L ++       +
Sbjct: 206 VLIVGAPGTGKTLLAKAVAGEAGVPFFSTSGSSFVEMFVGVGAARVRDLFEQAQQKAPCI 265

Query: 109 LFIDEIHRLSII 120
           +FIDE+  L  +
Sbjct: 266 IFIDELDALGKV 277


>gi|153006261|ref|YP_001380586.1| ATP-dependent protease La [Anaeromyxobacter sp. Fw109-5]
 gi|152029834|gb|ABS27602.1| ATP-dependent protease La [Anaeromyxobacter sp. Fw109-5]
          Length = 810

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 73/166 (43%), Gaps = 40/166 (24%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA----------GDL-AALLTNLE 104
           + FVGPPG+GKT+LA+ +AR +   F R + G V  +A          G L   ++ +L+
Sbjct: 361 LCFVGPPGVGKTSLARSIARAMNRKFVRISLGGVRDEAEIRGHRRTYIGALPGKIIQSLK 420

Query: 105 D----RDVLFIDEIHRLSI--------IVEEILYPA----MEDFQLDLMVGEGPSARSVK 148
                  V  +DE+ ++S          + E+L P       D  LDL            
Sbjct: 421 KAGSGNPVFLLDEVDKMSTDFRGDPSAALLEVLDPEQNHNFNDHYLDL-----------D 469

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
            +LS+   I     +G +  PLQDR  + IR+  Y   +  +I QR
Sbjct: 470 YDLSKVMFICTANTMGGIPGPLQDRMEV-IRIAGYTDLEKLSIAQR 514


>gi|121597791|ref|YP_989640.1| ATP-dependent metalloprotease FtsH [Burkholderia mallei SAVP1]
 gi|121225589|gb|ABM49120.1| ATP-dependent metalloprotease, FtsH family [Burkholderia mallei
           SAVP1]
          Length = 852

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 8/72 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL VG PG GKT LA+ VA E GV F STSG    +   G  AA + +L ++       +
Sbjct: 392 VLIVGAPGTGKTLLAKAVAGEAGVPFFSTSGSSFVEMFVGVGAARVRDLFEQAQQKAPCI 451

Query: 109 LFIDEIHRLSII 120
           +FIDE+  L  +
Sbjct: 452 IFIDELDALGKV 463


>gi|91081833|ref|XP_974716.1| PREDICTED: similar to replication factor C, 37-kDa subunit,
          putative [Tribolium castaneum]
 gi|270006308|gb|EFA02756.1| hypothetical protein TcasGA2_TC008489 [Tribolium castaneum]
          Length = 355

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RPRT+ +   Q EA S L+  I  A      L ++LF GPPG GKT+     AR+L
Sbjct: 37 RPRTVSDVVEQSEAVSVLQQCISGAD-----LPNLLFYGPPGTGKTSTILAAARQL 87


>gi|19705135|ref|NP_602630.1| DNA polymerase III subunits gamma and tau [Fusobacterium
          nucleatum subsp. nucleatum ATCC 25586]
 gi|296328310|ref|ZP_06870839.1| DNA polymerase III gamma and tau [Fusobacterium nucleatum subsp.
          nucleatum ATCC 23726]
 gi|19713068|gb|AAL93929.1| DNA polymerase III subunits gamma and tau [Fusobacterium
          nucleatum subsp. nucleatum ATCC 25586]
 gi|296154614|gb|EFG95402.1| DNA polymerase III gamma and tau [Fusobacterium nucleatum subsp.
          nucleatum ATCC 23726]
          Length = 484

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 5/68 (7%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG-VN 81
          RP +  E +G+ E   +LK+ ++  K+ A A    LF GP G+GKTT+A+++A+ +  +N
Sbjct: 10 RPSSFSEVSGENEIVKSLKLSLKN-KSMAHAY---LFSGPRGVGKTTIARLIAKGVNCLN 65

Query: 82 FRSTSGPV 89
           + T  P 
Sbjct: 66 LKETGEPC 73


>gi|15672003|ref|NP_266177.1| hypothetical protein L0204 [Lactococcus lactis subsp. lactis
           Il1403]
 gi|281490520|ref|YP_003352500.1| cell division protein FtsH [Lactococcus lactis subsp. lactis KF147]
 gi|1169754|sp|P46469|FTSH_LACLA RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|12722858|gb|AAK04119.1|AE006241_8 cell division protein FtsH [Lactococcus lactis subsp. lactis
           Il1403]
 gi|44027|emb|CAA48877.1| Tma protein [Lactococcus lactis]
 gi|281374338|gb|ADA63871.1| Cell division protein FtsH [Lactococcus lactis subsp. lactis KF147]
 gi|326405619|gb|ADZ62690.1| cell division protease FtsH [Lactococcus lactis subsp. lactis CV56]
          Length = 695

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108
           VL  GPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 229 VLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFENAKKTAPSI 288

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 289 IFIDEI 294


>gi|134118756|ref|XP_771881.1| hypothetical protein CNBN0610 [Cryptococcus neoformans var.
          neoformans B-3501A]
 gi|50254485|gb|EAL17234.1| hypothetical protein CNBN0610 [Cryptococcus neoformans var.
          neoformans B-3501A]
          Length = 327

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 5/63 (7%)

Query: 16 DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
          D  +   RP +L++     +  S ++ FIEA +     L H+L  GPPG GKT+    +A
Sbjct: 8  DDRVEKYRPVSLDDVVSHKDITSTIEKFIEAGR-----LPHLLLYGPPGTGKTSTVLALA 62

Query: 76 REL 78
          R L
Sbjct: 63 RRL 65


>gi|307150022|ref|YP_003885406.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7822]
 gi|306980250|gb|ADN12131.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7822]
          Length = 616

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 197 VLLVGPPGTGKTLLARAVAGEAGVPFFSISG 227


>gi|302349009|ref|YP_003816647.1| Cell division control protein 48, AAA family [Acidilobus
           saccharovorans 345-15]
 gi|302329421|gb|ADL19616.1| Cell division control protein 48, AAA family [Acidilobus
           saccharovorans 345-15]
          Length = 736

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 18/81 (22%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR---------- 106
           +L  GPPG GKT LA+ +A E+G  F + +GP I     ++      E+R          
Sbjct: 230 ILLYGPPGTGKTLLAKALANEIGAYFIAINGPEI-----MSKFYGESEERLREVFKEAQE 284

Query: 107 ---DVLFIDEIHRLSIIVEEI 124
               ++FIDEI  ++   EE+
Sbjct: 285 NAPSIIFIDEIDSIAPKREEV 305



 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E G NF +  GP
Sbjct: 506 VLLFGPPGTGKTMLAKAVATESGANFIAIRGP 537


>gi|239980352|ref|ZP_04702876.1| cell division protein ftsH-like protein [Streptomyces albus J1074]
 gi|291452215|ref|ZP_06591605.1| cell division protein FtsH [Streptomyces albus J1074]
 gi|291355164|gb|EFE82066.1| cell division protein FtsH [Streptomyces albus J1074]
          Length = 669

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 4/58 (6%)

Query: 34  VEACSNLKVFI-EAAKARA---EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VE    +K F+ E AK +A   +    VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 169 VEELHEIKEFLQEPAKFQAVGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISG 226


>gi|242279531|ref|YP_002991660.1| ATP-dependent protease ATP-binding subunit ClpX [Desulfovibrio
           salexigens DSM 2638]
 gi|242122425|gb|ACS80121.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfovibrio
           salexigens DSM 2638]
          Length = 417

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD--------LAALLTNLE--- 104
           ++L +GP G GKT LAQ +AR L V F       + +AG         L  LL N +   
Sbjct: 113 NILLIGPTGSGKTLLAQTLARVLKVPFAIADATTLTEAGYVGEDVENILVQLLQNADYDI 172

Query: 105 ---DRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 173 DAASRGIIYIDEIDKIS 189


>gi|237843887|ref|XP_002371241.1| replication factor C subunit, putative [Toxoplasma gondii ME49]
 gi|211968905|gb|EEB04101.1| replication factor C subunit, putative [Toxoplasma gondii ME49]
 gi|221483809|gb|EEE22121.1| replication factor C subunit, putative [Toxoplasma gondii GT1]
 gi|221504190|gb|EEE29865.1| replication factor C subunit, putative [Toxoplasma gondii VEG]
          Length = 336

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 50/220 (22%), Positives = 90/220 (40%), Gaps = 42/220 (19%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE- 77
           I   RP TL++  G  +    L++      AR   + H++  GPPG GKT+    + ++ 
Sbjct: 35  IEKYRPETLDDVVGNDQVMRRLRII-----AREGNMPHLMLAGPPGTGKTSSVLCLCKQL 89

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTN------LEDRD-------VLFIDEIHRLSIIVEEI 124
           LG  +R+ +  + A       ++         E RD       ++ +DE+  ++   ++ 
Sbjct: 90  LGSRWRAYTLELNASDERTIDVIREKVKHFAKEKRDLPAGRHKIVILDEVDAMTEAAQQA 149

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           L   ME F                 + +RF L  A      +  PLQ R  I   L F +
Sbjct: 150 LRRIMEQFS----------------DTTRFAL--ACNSSASVIEPLQSRCAI---LRFRK 188

Query: 185 IEDLKTI--VQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
           ++D + +  +++   +  L VTD+    I   + G  R A
Sbjct: 189 LDDSQLVRRLRQVCAMEALQVTDDGIEAIVFCADGDMRSA 228


>gi|199598785|ref|ZP_03212197.1| ATP-dependent Zn protease [Lactobacillus rhamnosus HN001]
 gi|199590290|gb|EDY98384.1| ATP-dependent Zn protease [Lactobacillus rhamnosus HN001]
          Length = 716

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           VL  GPPG GKT LA+ VA E GV F S SG    +   G  A+ + +L D+       +
Sbjct: 225 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFDQAKKAAPSI 284

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 285 IFIDEI 290


>gi|254413594|ref|ZP_05027364.1| ATP-dependent metallopeptidase HflB subfamily [Microcoleus
           chthonoplastes PCC 7420]
 gi|196179701|gb|EDX74695.1| ATP-dependent metallopeptidase HflB subfamily [Microcoleus
           chthonoplastes PCC 7420]
          Length = 612

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 193 VLLVGPPGTGKTLLARAVAGEAGVPFFSISG 223


>gi|218246670|ref|YP_002372041.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8801]
 gi|257059712|ref|YP_003137600.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8802]
 gi|218167148|gb|ACK65885.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8801]
 gi|256589878|gb|ACV00765.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8802]
          Length = 640

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 223 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 253


>gi|167742526|ref|ZP_02415300.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 14]
          Length = 666

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 8/72 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL VG PG GKT LA+ VA E GV F STSG    +   G  AA + +L ++       +
Sbjct: 206 VLIVGAPGTGKTLLAKAVAGEAGVPFFSTSGSSFVEMFVGVGAARVRDLFEQAQQKAPCI 265

Query: 109 LFIDEIHRLSII 120
           +FIDE+  L  +
Sbjct: 266 IFIDELDALGKV 277


>gi|163868072|ref|YP_001609276.1| ATP-dependent protease ATP-binding subunit ClpX [Bartonella
           tribocorum CIP 105476]
 gi|189082484|sp|A9ISA8|CLPX_BART1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|161017723|emb|CAK01281.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bartonella
           tribocorum CIP 105476]
          Length = 424

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L VGP G GKT LAQ +AR + V F       + +AG +   + N+         
Sbjct: 112 AKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 171

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDE+ ++S
Sbjct: 172 YNVERAQRGIVYIDEVDKIS 191


>gi|115379417|ref|ZP_01466519.1| hypothetical protein STIAU_1902 [Stigmatella aurantiaca DW4/3-1]
 gi|115363581|gb|EAU62714.1| hypothetical protein STIAU_1902 [Stigmatella aurantiaca DW4/3-1]
          Length = 1833

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 26/44 (59%)

Query: 50   RAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA 93
            R + +  +L + PPG GKTTL + VA  LG+ F   +GP +  A
Sbjct: 1285 RTDRMGMLLLMSPPGYGKTTLMEYVASRLGLTFVKVNGPALGHA 1328


>gi|53716929|ref|YP_105706.1| ATP-dependent metalloprotease FtsH [Burkholderia mallei ATCC 23344]
 gi|124383118|ref|YP_001024213.1| ATP-dependent metalloprotease FtsH [Burkholderia mallei NCTC 10229]
 gi|126447417|ref|YP_001078380.1| ATP-dependent metalloprotease FtsH [Burkholderia mallei NCTC 10247]
 gi|254200513|ref|ZP_04906878.1| ATP-dependent metalloprotease, FtsH family [Burkholderia mallei
           FMH]
 gi|254204538|ref|ZP_04910891.1| ATP-dependent metalloprotease, FtsH family [Burkholderia mallei
           JHU]
 gi|254356833|ref|ZP_04973108.1| ATP-dependent metalloprotease, FtsH family [Burkholderia mallei
           2002721280]
 gi|52422899|gb|AAU46469.1| ATP-dependent metalloprotease, FtsH family [Burkholderia mallei
           ATCC 23344]
 gi|124291138|gb|ABN00408.1| ATP-dependent metallopeptidase HflB [Burkholderia mallei NCTC
           10229]
 gi|126240271|gb|ABO03383.1| ATP-dependent metallopeptidase HflB [Burkholderia mallei NCTC
           10247]
 gi|147748125|gb|EDK55200.1| ATP-dependent metalloprotease, FtsH family [Burkholderia mallei
           FMH]
 gi|147754124|gb|EDK61188.1| ATP-dependent metalloprotease, FtsH family [Burkholderia mallei
           JHU]
 gi|148025860|gb|EDK83983.1| ATP-dependent metalloprotease, FtsH family [Burkholderia mallei
           2002721280]
          Length = 666

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 8/72 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL VG PG GKT LA+ VA E GV F STSG    +   G  AA + +L ++       +
Sbjct: 206 VLIVGAPGTGKTLLAKAVAGEAGVPFFSTSGSSFVEMFVGVGAARVRDLFEQAQQKAPCI 265

Query: 109 LFIDEIHRLSII 120
           +FIDE+  L  +
Sbjct: 266 IFIDELDALGKV 277


>gi|19553890|ref|NP_601892.1| cell division protein [Corynebacterium glutamicum ATCC 13032]
 gi|62391533|ref|YP_226935.1| cell-division protein (ATP-dependent Zn metallopeptidase)
           [Corynebacterium glutamicum ATCC 13032]
 gi|75368391|sp|Q6M2F0|FTSH_CORGL RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|41326875|emb|CAF20719.1| CELL-DIVISION PROTEIN (ATP-DEPENDENT ZN METALLOPEPTIDASE)
           [Corynebacterium glutamicum ATCC 13032]
          Length = 853

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 32/70 (45%), Positives = 35/70 (50%), Gaps = 9/70 (12%)

Query: 26  TLEEFTGQVEACSNL---KVFIEAAKARAEALDH-----VLFVGPPGLGKTTLAQVVARE 77
           T  +  G  EA   L   K F+E    R EAL       VL  GPPG GKT LA+ VA E
Sbjct: 163 TFADVAGAEEAVDELHEIKDFLEDP-TRYEALGAKIPRGVLLYGPPGTGKTLLARAVAGE 221

Query: 78  LGVNFRSTSG 87
            GV F S SG
Sbjct: 222 AGVPFYSISG 231


>gi|71020215|ref|XP_760338.1| hypothetical protein UM04191.1 [Ustilago maydis 521]
 gi|46099962|gb|EAK85195.1| hypothetical protein UM04191.1 [Ustilago maydis 521]
          Length = 1142

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 35/70 (50%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           +L  G PG GKT LA  VA+E G+NF S  GP I     G     + +L DR       V
Sbjct: 809 LLLYGYPGCGKTLLASAVAKECGLNFISVKGPEILNKYIGASEKSVRDLFDRAQAAKPCV 868

Query: 109 LFIDEIHRLS 118
           LF DE   ++
Sbjct: 869 LFFDEFDSIA 878


>gi|325963519|ref|YP_004241425.1| AAA+ family ATPase [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469606|gb|ADX73291.1| AAA+ family ATPase [Arthrobacter phenanthrenivorans Sphe3]
          Length = 346

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 117/282 (41%), Gaps = 66/282 (23%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKA-----------RAEAL------DHVLFVGPPGLGK 67
           R L E   +++A   L+   E  +A           +A  L       H++F+G PG GK
Sbjct: 46  RPLSELQAELDALVGLETVKEQVRALVALLQVQARRKAHGLPEVATSQHLVFLGNPGTGK 105

Query: 68  TTLAQVVA---RELGVNFRST------SGPVIAKAGDLAALLTNLEDR---DVLFIDEIH 115
           TT+A+++A   R +G+  +        SG V    G  A     +  R    VLFIDE +
Sbjct: 106 TTVARLLAEMYRAVGLLQKGHLVEVDRSGLVGQYVGATAIKTDRVIRRALDGVLFIDEAY 165

Query: 116 RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRF--------TLIAATTRVG--- 164
            L          A ED ++D     GP A  +++ L R          ++A   R+    
Sbjct: 166 AL----------APEDGRMDF----GPEA--IEVLLKRMEDHRHRLVVIVAGYPRLMESF 209

Query: 165 LLTNP-LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAG 223
           LL+NP L+ RF   I    Y ++ L+TI  +   L     T E + +  +R   T   AG
Sbjct: 210 LLSNPGLRSRFAREITFPDYSVDALQTIFHQ--MLAQHEYTLEPSADQMLRRILTGLHAG 267

Query: 224 RLLRRVRDFAEVAHAKTITREIADAALLRLAIDK-MGFDQLD 264
                  D      A+T+  +  +   LRL++DK    D LD
Sbjct: 268 ------EDSGNARFARTLFEQALNRQALRLSLDKEQSLDTLD 303


>gi|307110057|gb|EFN58294.1| hypothetical protein CHLNCDRAFT_142278 [Chlorella variabilis]
          Length = 640

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F  TSG
Sbjct: 233 VLLVGPPGTGKTMLARAIAGEAGVPFFYTSG 263


>gi|289580455|ref|YP_003478921.1| ATPase AAA, CDC48 subfamily [Natrialba magadii ATCC 43099]
 gi|289530008|gb|ADD04359.1| AAA family ATPase, CDC48 subfamily [Natrialba magadii ATCC 43099]
          Length = 763

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 20/36 (55%), Positives = 22/36 (61%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           A + VL  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 522 AANGVLLYGPPGTGKTLLAKAVASEAQSNFISVKGP 557



 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 34/70 (48%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK---AGDLAALLTNLEDRD-----V 108
           VL  GPPG GKT +A+ VA E+   F   SGP I           L +  ED       V
Sbjct: 253 VLLHGPPGTGKTLIAKAVANEIDAFFTDISGPEIMSRYYGESEEQLRSVFEDATENAPAV 312

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 313 VFIDEIDSIA 322


>gi|289422715|ref|ZP_06424555.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Peptostreptococcus anaerobius 653-L]
 gi|289156894|gb|EFD05519.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Peptostreptococcus anaerobius 653-L]
          Length = 422

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 61/137 (44%), Gaps = 29/137 (21%)

Query: 11  NVSQEDADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEALD---------- 55
           N +QE+ +++L +P+ + E       GQ  A   L V +     R  + +          
Sbjct: 52  NAAQENGEMNLPKPKEMMEILNDYVIGQSGAKKALSVAVYNHYKRIYSENTTGDVEVQKS 111

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LAQ +A+ L V F       + +AG +   + N+            
Sbjct: 112 NILLLGPTGSGKTLLAQTLAKILNVPFAIADATSLTEAGYVGEDVENIILKLVQAADFDV 171

Query: 104 --EDRDVLFIDEIHRLS 118
               + +++IDEI ++S
Sbjct: 172 ERAQKGIIYIDEIDKIS 188


>gi|254294161|ref|YP_003060184.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Hirschia
           baltica ATCC 49814]
 gi|254042692|gb|ACT59487.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Hirschia
           baltica ATCC 49814]
          Length = 423

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L VGP G GKT LAQ +AR + V F       + +AG +   + N+         
Sbjct: 112 AKSNILLVGPTGCGKTLLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQASD 171

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDEI ++S
Sbjct: 172 YNVERAQRGIVYIDEIDKIS 191


>gi|240850275|ref|YP_002971668.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bartonella
           grahamii as4aup]
 gi|240267398|gb|ACS50986.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bartonella
           grahamii as4aup]
          Length = 424

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L VGP G GKT LAQ +AR + V F       + +AG +   + N+         
Sbjct: 112 AKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 171

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDE+ ++S
Sbjct: 172 YNVERAQRGIVYIDEVDKIS 191


>gi|269798317|ref|YP_003312217.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Veillonella
           parvula DSM 2008]
 gi|294792181|ref|ZP_06757329.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Veillonella
           sp. 6_1_27]
 gi|294794046|ref|ZP_06759183.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Veillonella
           sp. 3_1_44]
 gi|269094946|gb|ACZ24937.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Veillonella
           parvula DSM 2008]
 gi|294455616|gb|EFG23988.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Veillonella
           sp. 3_1_44]
 gi|294457411|gb|EFG25773.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Veillonella
           sp. 6_1_27]
          Length = 417

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           +VLF+GP G GKT LAQ +A+ L V F       + +AG +   + N+            
Sbjct: 110 NVLFIGPTGSGKTLLAQTLAKMLEVPFAIADATSLTEAGYVGEDVENILLKIIQAADYDI 169

Query: 104 --EDRDVLFIDEIHRLS 118
              +R +++IDEI +++
Sbjct: 170 ARAERGIIYIDEIDKIA 186


>gi|254172798|ref|ZP_04879472.1| replication factor C large subunit [Thermococcus sp. AM4]
 gi|214032954|gb|EEB73782.1| replication factor C large subunit [Thermococcus sp. AM4]
          Length = 498

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAA-KARAEALDHVLFVGPPGLGKTTLAQVVARE 77
          +   RPR L E   Q +A   ++ +IEA           ++  GPPG+GKTT    +A E
Sbjct: 6  VEKYRPRKLSEIVNQEKAIEQVRAWIEAWLHGNPPKKKALILAGPPGVGKTTTVYALANE 65

Query: 78 LG 79
           G
Sbjct: 66 YG 67


>gi|168207908|ref|ZP_02633913.1| ATP-dependent protease [Clostridium perfringens E str. JGS1987]
 gi|170660782|gb|EDT13465.1| ATP-dependent protease [Clostridium perfringens E str. JGS1987]
          Length = 632

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 6/65 (9%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           LLRP + +E  GQ  A  +L      +K  +    H++  GPPG+GKTT A+ +A E   
Sbjct: 165 LLRPDSFDEVVGQERAVKSL-----LSKLASPYPQHIILYGPPGVGKTTAAR-IALETAK 218

Query: 81  NFRST 85
             +ST
Sbjct: 219 KLKST 223


>gi|169343167|ref|ZP_02864188.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens C str.
           JGS1495]
 gi|169298719|gb|EDS80795.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens C str.
           JGS1495]
          Length = 601

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 194 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 224


>gi|167906504|ref|ZP_02493709.1| ATP-dependent metalloprotease, FtsH family protein [Burkholderia
           pseudomallei NCTC 13177]
          Length = 666

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 8/72 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL VG PG GKT LA+ VA E GV F STSG    +   G  AA + +L ++       +
Sbjct: 206 VLIVGAPGTGKTLLAKAVAGEAGVPFFSTSGSSFVEMFVGVGAARVRDLFEQAQQKAPCI 265

Query: 109 LFIDEIHRLSII 120
           +FIDE+  L  +
Sbjct: 266 IFIDELDALGKV 277


>gi|53722142|ref|YP_111127.1| FtsH-2 protease [Burkholderia pseudomallei K96243]
 gi|126458626|ref|YP_001075521.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei
           1106a]
 gi|167723562|ref|ZP_02406798.1| ATP-dependent metalloprotease, FtsH family protein [Burkholderia
           pseudomallei DM98]
 gi|167819698|ref|ZP_02451378.1| ATP-dependent metalloprotease, FtsH family protein [Burkholderia
           pseudomallei 91]
 gi|167849539|ref|ZP_02475047.1| ATP-dependent metalloprotease, FtsH family protein [Burkholderia
           pseudomallei B7210]
 gi|217418885|ref|ZP_03450392.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 576]
 gi|237508806|ref|ZP_04521521.1| putative Cell division protease FtsH homolog [Burkholderia
           pseudomallei MSHR346]
 gi|242311752|ref|ZP_04810769.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei
           1106b]
 gi|254190192|ref|ZP_04896701.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254193314|ref|ZP_04899748.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei S13]
 gi|254262317|ref|ZP_04953182.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei
           1710a]
 gi|254300451|ref|ZP_04967897.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 406e]
 gi|310943147|sp|Q3JMH0|FTSH_BURP1 RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|52212556|emb|CAH38582.1| FtsH-2 protease [Burkholderia pseudomallei K96243]
 gi|126232394|gb|ABN95807.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei
           1106a]
 gi|157810094|gb|EDO87264.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 406e]
 gi|157937869|gb|EDO93539.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei
           Pasteur 52237]
 gi|169650067|gb|EDS82760.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei S13]
 gi|217398189|gb|EEC38204.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 576]
 gi|235001011|gb|EEP50435.1| putative Cell division protease FtsH homolog [Burkholderia
           pseudomallei MSHR346]
 gi|242134991|gb|EES21394.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei
           1106b]
 gi|254213319|gb|EET02704.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei
           1710a]
          Length = 666

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 8/72 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL VG PG GKT LA+ VA E GV F STSG    +   G  AA + +L ++       +
Sbjct: 206 VLIVGAPGTGKTLLAKAVAGEAGVPFFSTSGSSFVEMFVGVGAARVRDLFEQAQQKAPCI 265

Query: 109 LFIDEIHRLSII 120
           +FIDE+  L  +
Sbjct: 266 IFIDELDALGKV 277


>gi|15893891|ref|NP_347240.1| ATP-dependent zinc metallopeptidase FtsH (cell dividion protein)
           [Clostridium acetobutylicum ATCC 824]
 gi|15023472|gb|AAK78580.1|AE007575_4 ATP-dependent zinc metallopeptidase FtsH (cell dividion protein)
           [Clostridium acetobutylicum ATCC 824]
 gi|325508018|gb|ADZ19654.1| ATP-dependent zinc metallopeptidase FtsH (cell dividion protein)
           [Clostridium acetobutylicum EA 2018]
          Length = 621

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 36/70 (51%), Gaps = 7/70 (10%)

Query: 25  RTLEEFTGQVEACSNLKVFIE-------AAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +T E+  GQ EA  +L   ++        A+  A+     L VGPPG GKT LA+ VA E
Sbjct: 162 KTFEDVAGQEEAKESLVEIVDFLHNPNKYAEIGAKLPKGALLVGPPGTGKTLLAKAVAGE 221

Query: 78  LGVNFRSTSG 87
             V F S SG
Sbjct: 222 AKVPFFSMSG 231


>gi|17228756|ref|NP_485304.1| cell division protein [Nostoc sp. PCC 7120]
 gi|17130608|dbj|BAB73218.1| cell division protein [Nostoc sp. PCC 7120]
          Length = 613

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 194 VLLVGPPGTGKTLLARAVAGEAGVPFFSISG 224


>gi|22297675|ref|NP_680922.1| cell division protein [Thermosynechococcus elongatus BP-1]
 gi|22293852|dbj|BAC07684.1| cell division protein [Thermosynechococcus elongatus BP-1]
          Length = 612

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 193 VLLVGPPGTGKTLLARAVAGEAGVPFFSISG 223


>gi|18311452|ref|NP_563386.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens str.
           13]
 gi|168206865|ref|ZP_02632870.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens E str.
           JGS1987]
 gi|168211208|ref|ZP_02636833.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens B str.
           ATCC 3626]
 gi|168215142|ref|ZP_02640767.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens CPE
           str. F4969]
 gi|168218230|ref|ZP_02643855.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens NCTC
           8239]
 gi|18146136|dbj|BAB82176.1| probable cell-division protein [Clostridium perfringens str. 13]
 gi|170661765|gb|EDT14448.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens E str.
           JGS1987]
 gi|170710762|gb|EDT22944.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens B str.
           ATCC 3626]
 gi|170713449|gb|EDT25631.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens CPE
           str. F4969]
 gi|182379753|gb|EDT77232.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens NCTC
           8239]
          Length = 601

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 194 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 224


>gi|67922579|ref|ZP_00516086.1| Peptidase M41, FtsH [Crocosphaera watsonii WH 8501]
 gi|67855588|gb|EAM50840.1| Peptidase M41, FtsH [Crocosphaera watsonii WH 8501]
          Length = 636

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL +GPPG GKT LA+ VA E GV F S SG
Sbjct: 225 VLLIGPPGTGKTLLAKAVAGEAGVPFFSISG 255


>gi|331268097|ref|YP_004347746.1| cell division protein [Chlorella variabilis]
 gi|325296274|gb|ADZ04994.1| cell division protein [Chlorella variabilis]
          Length = 1489

 Score = 41.2 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 8/89 (8%)

Query: 49  ARAEALDH-VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL---E 104
           A ++ L H +L  GPPG GKT L Q +A E  V     SG  + + G+ A+    +   E
Sbjct: 790 ALSKTLPHGILLTGPPGTGKTLLVQALAGEAQVPIIVLSGSSLIEPGESASFKLQMVFQE 849

Query: 105 DRD----VLFIDEIHRLSIIVEEILYPAM 129
            R     ++FIDEI  LS    +I+   M
Sbjct: 850 ARQLAPCIVFIDEIDTLSSKRSQIVQNPM 878


>gi|312213539|emb|CBX89969.1| similar to ATP-dependent protease La [Leptosphaeria maculans]
          Length = 932

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 68/163 (41%), Gaps = 33/163 (20%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTS-GPVIAKA----------GDLAALLTNLED 105
           +L  GPPG+GKT+LA+ VA  LG  F   S G V  +A            +  L+ N   
Sbjct: 484 LLLAGPPGVGKTSLAKSVATALGRKFHRISLGGVRDEAEIRGHRRTYVAAMPGLIVNGLK 543

Query: 106 R-----DVLFIDEIHRL---------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINL 151
           +      V+ +DEI +L         S  + E+L P       D  VG       + I+L
Sbjct: 544 KVGVANPVILLDEIDKLAGSNHNGDPSAAMLEVLDPEQNHTFTDHYVG-------IPIDL 596

Query: 152 SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           S+   IA    +  +  PL DR    I L+ Y   + + I  R
Sbjct: 597 SKVLFIATANSLDTIPPPLLDRMET-IELSGYTTIEKRHIASR 638


>gi|296393301|ref|YP_003658185.1| DNA polymerase III subunits gamma and tau [Segniliparus rotundus
          DSM 44985]
 gi|296180448|gb|ADG97354.1| DNA polymerase III, subunits gamma and tau [Segniliparus rotundus
          DSM 44985]
          Length = 664

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 6/68 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
          RP  L++  GQ      L V +EA +     L H  LF GP G GKT+LA+++AR +   
Sbjct: 8  RPERLDQVLGQEHVTKPLSVALEAGR-----LGHAYLFSGPRGCGKTSLARILARSVNCE 62

Query: 82 FRSTSGPV 89
             T+ P 
Sbjct: 63 KGPTANPC 70


>gi|284931299|gb|ADC31237.1| replication-associated recombination protein A (rarA) [Mycoplasma
           gallisepticum str. F]
          Length = 413

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 25/109 (22%)

Query: 21  LLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
             +P ++E+  GQ         L+  I+  K  +     +L  G PG+GKTTL  ++  E
Sbjct: 11  FYQPESVEDIIGQKHLLHEYGILRRMIDLRKPYS-----LLVTGEPGIGKTTLCNILISE 65

Query: 78  LGV---NFRSTSGPV------IAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           + +   +F S S  +      I+KA DL        ++ V+ IDEIHRL
Sbjct: 66  MNLPSFSFNSASDSLQELKQFISKAKDL--------NQCVIIIDEIHRL 106


>gi|258509509|ref|YP_003172260.1| cell division protein FtsH [Lactobacillus rhamnosus GG]
 gi|257149436|emb|CAR88409.1| Cell division protein FtsH [Lactobacillus rhamnosus GG]
 gi|259650777|dbj|BAI42939.1| ATP-dependent Zn protease FtsH [Lactobacillus rhamnosus GG]
          Length = 716

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           VL  GPPG GKT LA+ VA E GV F S SG    +   G  A+ + +L D+       +
Sbjct: 225 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFDQAKKAAPSI 284

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 285 IFIDEI 290


>gi|294871503|ref|XP_002765958.1| hypothetical protein Pmar_PMAR024969 [Perkinsus marinus ATCC 50983]
 gi|239866406|gb|EEQ98675.1| hypothetical protein Pmar_PMAR024969 [Perkinsus marinus ATCC 50983]
          Length = 366

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 16/77 (20%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD----------------LAALL 100
           +L VGPPG GKT++A+ +A+ LG  F   S   ++ AG+                L+AL+
Sbjct: 12  LLLVGPPGCGKTSIAESIAKALGRRFEMVSLGGLSDAGELKGHRRTYIGSQPGKILSALI 71

Query: 101 TNLEDRDVLFIDEIHRL 117
            +     V+ +DEI +L
Sbjct: 72  ASGSKNPVILLDEIDKL 88


>gi|238018908|ref|ZP_04599334.1| hypothetical protein VEIDISOL_00768 [Veillonella dispar ATCC 17748]
 gi|237864392|gb|EEP65682.1| hypothetical protein VEIDISOL_00768 [Veillonella dispar ATCC 17748]
          Length = 410

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           +VLF+GP G GKT LAQ +A+ L V F       + +AG +   + N+            
Sbjct: 103 NVLFIGPTGSGKTLLAQTLAKMLEVPFAIADATSLTEAGYVGEDVENILLKIIQAADYDI 162

Query: 104 --EDRDVLFIDEIHRLS 118
              +R +++IDEI +++
Sbjct: 163 ARAERGIIYIDEIDKIA 179


>gi|229551624|ref|ZP_04440349.1| M41 family endopeptidase FtsH [Lactobacillus rhamnosus LMS2-1]
 gi|258540709|ref|YP_003175208.1| cell division protein FtsH [Lactobacillus rhamnosus Lc 705]
 gi|229315028|gb|EEN81001.1| M41 family endopeptidase FtsH [Lactobacillus rhamnosus LMS2-1]
 gi|257152385|emb|CAR91357.1| Cell division protein FtsH [Lactobacillus rhamnosus Lc 705]
          Length = 716

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           VL  GPPG GKT LA+ VA E GV F S SG    +   G  A+ + +L D+       +
Sbjct: 225 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFDQAKKAAPSI 284

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 285 IFIDEI 290


>gi|169237565|ref|YP_001690769.1| AAA-type ATPase (cell division control protein homolog)
           [Halobacterium salinarum R1]
 gi|167728792|emb|CAP15676.1| AAA-type ATPase (cell division control protein homolog)
           [Halobacterium salinarum R1]
          Length = 415

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 22/125 (17%)

Query: 16  DADISLLRPRTLEE-----FTGQVEACSNLKVFIEAAKARAEALDHV--------LFVGP 62
           + D S L P+ + +     F G  +    +K  +E      E  + V        LF GP
Sbjct: 133 ETDSSDLTPKNVPDKEYADFGGMDDVVEEVKYKVEVPLKEPERFEDVGMSAPKGVLFYGP 192

Query: 63  PGLGKTTLAQVVAREL-GVNFRSTSGPVIAK------AGDLAALLTNLEDRD--VLFIDE 113
           PG GKT LA++VA ++   +F S  GP ++       A  L  L  N +     ++F DE
Sbjct: 193 PGTGKTYLAKIVANQVEDASFYSIRGPELSHELVGGTARKLRGLFENAKKNPPAIIFFDE 252

Query: 114 IHRLS 118
           I  ++
Sbjct: 253 IDSMA 257


>gi|166363123|ref|YP_001655396.1| cell division protein [Microcystis aeruginosa NIES-843]
 gi|166085496|dbj|BAG00204.1| cell division protein [Microcystis aeruginosa NIES-843]
          Length = 617

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISG 228


>gi|126442831|ref|YP_001062570.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 668]
 gi|167828076|ref|ZP_02459547.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 9]
 gi|226198325|ref|ZP_03793895.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei
           Pakistan 9]
 gi|126222322|gb|ABN85827.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 668]
 gi|225929609|gb|EEH25626.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei
           Pakistan 9]
          Length = 666

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 8/72 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL VG PG GKT LA+ VA E GV F STSG    +   G  AA + +L ++       +
Sbjct: 206 VLIVGAPGTGKTLLAKAVAGEAGVPFFSTSGSSFVEMFVGVGAARVRDLFEQAQQKAPCI 265

Query: 109 LFIDEIHRLSII 120
           +FIDE+  L  +
Sbjct: 266 IFIDELDALGKV 277


>gi|110800961|ref|YP_697158.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens ATCC
           13124]
 gi|110675608|gb|ABG84595.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens ATCC
           13124]
          Length = 601

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 194 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 224


>gi|78223097|ref|YP_384844.1| FtsH peptidase [Geobacter metallireducens GS-15]
 gi|78194352|gb|ABB32119.1| membrane protease FtsH catalytic subunit [Geobacter metallireducens
           GS-15]
          Length = 608

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 189 VLLVGPPGTGKTLLARAVAGEAGVPFFSISG 219


>gi|77556179|gb|ABA98975.1| NB-ARC domain containing protein, expressed [Oryza sativa Japonica
           Group]
 gi|215686821|dbj|BAG89671.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 700

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 89/196 (45%), Gaps = 20/196 (10%)

Query: 40  LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAAL 99
           +K+  E   A ++ L  +  VGP GLGKTTLA  V R+L   F+  +   +++  D+  +
Sbjct: 176 IKLLTEGEGASSQKLKVISIVGPGGLGKTTLANEVFRKLESQFQCRAFVSLSQQPDVKKI 235

Query: 100 LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD----LMVGEGPSARSVK-INLSRF 154
           + N+  +  +   E   + I  EE L  A  +F  +    +++ +  S ++ K I  + F
Sbjct: 236 VRNIYCQ--VSQQEYGNIDIWDEEKLINATREFLTNKRYFVVIDDIWSTQAWKTIRCALF 293

Query: 155 -----TLIAATTR----VGLLTNPLQDR-FGI-PIRLNFYEIEDLKTIVQRGAKLTGLAV 203
                + I  TTR          P  DR F I P+ ++  +   LK I   G+K   +  
Sbjct: 294 VNNCGSRIMTTTRNMAIAKSCCTPDHDRVFEIMPLSIDNSKSLFLKRIF--GSKDVCIPQ 351

Query: 204 TDEAACEIAMRSRGTP 219
            DE   EI  +  G+P
Sbjct: 352 LDEVCYEILKKCGGSP 367


>gi|332796313|ref|YP_004457813.1| AAA ATPase [Acidianus hospitalis W1]
 gi|332694048|gb|AEE93515.1| AAA family ATPase, CDC48 subfamily [Acidianus hospitalis W1]
          Length = 767

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT LA+ VA E G NF +  GP
Sbjct: 500 ILLFGPPGTGKTMLAKAVATESGANFIAVRGP 531



 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 8/77 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL-EDRD-----V 108
           VL  GPPG GKT LA+ VA E    F S +GP I     G+    L  + ED       +
Sbjct: 227 VLLYGPPGTGKTLLAKAVANETDAYFTSINGPEIMSKFYGESEQRLREIFEDAKKHAPAI 286

Query: 109 LFIDEIHRLSIIVEEIL 125
           +FIDEI  ++   +E++
Sbjct: 287 IFIDEIDAIAPKRDEVI 303


>gi|320164481|gb|EFW41380.1| 26S proteasome regulatory complex [Capsaspora owczarzaki ATCC
           30864]
          Length = 1105

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ +A E G +F S  GP
Sbjct: 795 VLLYGPPGCGKTLLAKAIAHESGASFISIKGP 826



 Score = 38.1 bits (87), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 47/100 (47%), Gaps = 17/100 (17%)

Query: 32  GQVEAC-SNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARELGVNF 82
           G +E+C  +++  IE      E   H        +L  GPPG GKT LA  +A EL + F
Sbjct: 403 GGLESCLQDVRELIEYPLTHPEIYVHLGVEPPRGILLHGPPGCGKTLLANAIAGELELPF 462

Query: 83  RSTSGPVIAK--AGDLAALLTNL------EDRDVLFIDEI 114
              S P I    +G+  A + +L      +   ++FIDEI
Sbjct: 463 LKVSAPEIVSGMSGESEAKIRDLFAEAAAQAPCIVFIDEI 502


>gi|310821340|ref|YP_003953698.1| hypothetical protein STAUR_4087 [Stigmatella aurantiaca DW4/3-1]
 gi|309394412|gb|ADO71871.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 1828

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 26/44 (59%)

Query: 50   RAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA 93
            R + +  +L + PPG GKTTL + VA  LG+ F   +GP +  A
Sbjct: 1280 RTDRMGMLLLMSPPGYGKTTLMEYVASRLGLTFVKVNGPALGHA 1323


>gi|302337809|ref|YP_003803015.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Spirochaeta
           smaragdinae DSM 11293]
 gi|301634994|gb|ADK80421.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Spirochaeta
           smaragdinae DSM 11293]
          Length = 413

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           +VL +GP G GKT LA+ +AR+L V F       + +AG    D+  +L  L        
Sbjct: 111 NVLLLGPTGTGKTLLAKTLARKLKVPFAIADATTLTEAGYVGEDVENILLKLIQAAGNNI 170

Query: 104 --EDRDVLFIDEIHRLS 118
              +R +++IDEI ++S
Sbjct: 171 AAAERGIIYIDEIDKIS 187


>gi|299469796|emb|CBN76650.1| FtsH protease [Ectocarpus siliculosus]
          Length = 738

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 48/101 (47%), Gaps = 19/101 (18%)

Query: 33  QVEACSNLKVFIEA-----------AKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           QV  C + K  +E             K  A+    V+  GPPG GKT +A+ VA E GV 
Sbjct: 267 QVAGCDSAKFELEEVVDFLKNPAKYTKVGAKIPRGVILEGPPGTGKTLIARAVAGEAGVP 326

Query: 82  FRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEI 114
           F +TSG    +   G  AA + +L D+       ++FIDEI
Sbjct: 327 FIATSGSEFVEMFVGVGAARVRDLFDKAKENSPCIIFIDEI 367


>gi|291525458|emb|CBK91045.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Eubacterium
           rectale DSM 17629]
          Length = 423

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 61/135 (45%), Gaps = 28/135 (20%)

Query: 18  DISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEALD---------HVLFVGPP 63
           DI+L+ P  L+ F      GQ +A   L V +     R  A D         ++L +GP 
Sbjct: 62  DINLVTPEELKAFLDDYVIGQDQAKKVLSVAVYNHYKRVLAGDTSDVELQKSNILMLGPT 121

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---EDRD-------VL 109
           G GKT LAQ +AR + V F       + +AG    D+  +L  L    D D       ++
Sbjct: 122 GSGKTLLAQTLARVINVPFAIADATTLTEAGYVGEDVENILLKLIQAADYDIERAEHGII 181

Query: 110 FIDEIHRLSIIVEEI 124
           +IDEI +++   E +
Sbjct: 182 YIDEIDKITKKSENV 196


>gi|291166566|gb|EFE28612.1| ATP-dependent metalloprotease FtsH [Filifactor alocis ATCC 35896]
          Length = 666

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           +L VGPPG GKT L++ VA E GV F S SG
Sbjct: 199 ILMVGPPGTGKTYLSKAVAGEAGVPFYSISG 229


>gi|296136116|ref|YP_003643358.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thiomonas
           intermedia K12]
 gi|295796238|gb|ADG31028.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thiomonas
           intermedia K12]
          Length = 420

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE 104
           A  ++L VGP G GKT LAQ +AR L V F       + +AG +          LL N  
Sbjct: 113 AKSNILLVGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCN 172

Query: 105 ------DRDVLFIDEIHRLS 118
                  R +++IDEI ++S
Sbjct: 173 YEIERAQRGIVYIDEIDKIS 192


>gi|239825648|ref|YP_002948272.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. WCH70]
 gi|239805941|gb|ACS23006.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. WCH70]
          Length = 635

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISG 228


>gi|313125289|ref|YP_004035553.1| ATPase AAA [Halogeometricum borinquense DSM 11551]
 gi|312291654|gb|ADQ66114.1| AAA+ family ATPase [Halogeometricum borinquense DSM 11551]
          Length = 456

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 16/26 (61%), Positives = 22/26 (84%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF 82
           +LFVGPPG GKTT+++ +A ELG+ F
Sbjct: 222 ILFVGPPGTGKTTVSRALAHELGLPF 247


>gi|261417562|ref|YP_003251244.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. Y412MC61]
 gi|297528437|ref|YP_003669712.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. C56-T3]
 gi|319765219|ref|YP_004130720.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. Y412MC52]
 gi|261374019|gb|ACX76762.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. Y412MC61]
 gi|297251689|gb|ADI25135.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. C56-T3]
 gi|317110085|gb|ADU92577.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. Y412MC52]
          Length = 632

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISG 228


>gi|212637911|ref|YP_002314431.1| ATP-dependent Zn protease FtsH [Anoxybacillus flavithermus WK1]
 gi|212559391|gb|ACJ32446.1| ATP-dependent Zn protease FtsH [Anoxybacillus flavithermus WK1]
          Length = 627

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISG 228


>gi|182625999|ref|ZP_02953762.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens D str.
           JGS1721]
 gi|177908706|gb|EDT71217.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens D str.
           JGS1721]
          Length = 601

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 194 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 224


>gi|86608120|ref|YP_476882.1| cell division protein FtsH [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|123738037|sp|Q2JNP0|FTSH_SYNJB RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|86556662|gb|ABD01619.1| cell division protein FtsH [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 638

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 205 VLLVGPPGTGKTLLARAVAGEAGVPFFSISG 235


>gi|83646751|ref|YP_435186.1| ATP-dependent Zn protease [Hahella chejuensis KCTC 2396]
 gi|123739894|sp|Q2SF13|FTSH_HAHCH RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|83634794|gb|ABC30761.1| ATP-dependent Zn protease [Hahella chejuensis KCTC 2396]
          Length = 619

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 7/69 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T +E  GQ  A   ++  +E         +  A A   VL +GPPG GKT LA+ +A E 
Sbjct: 174 TFDEVAGQTNAKREVQELVEYLRDPDRFHRVGALAPRGVLLMGPPGTGKTLLARALAGEA 233

Query: 79  GVNFRSTSG 87
           GVNF   S 
Sbjct: 234 GVNFYPMSA 242


>gi|75906798|ref|YP_321094.1| FtsH peptidase [Anabaena variabilis ATCC 29413]
 gi|75700523|gb|ABA20199.1| membrane protease FtsH catalytic subunit [Anabaena variabilis ATCC
           29413]
          Length = 613

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 194 VLLVGPPGTGKTLLARAVAGEAGVPFFSISG 224


>gi|24658770|ref|NP_726263.1| CG3499 [Drosophila melanogaster]
 gi|15291271|gb|AAK92904.1| GH14313p [Drosophila melanogaster]
 gi|23240115|gb|AAM71132.2| CG3499 [Drosophila melanogaster]
 gi|220945266|gb|ACL85176.1| CG3499-PB [synthetic construct]
 gi|220954998|gb|ACL90042.1| CG3499-PB [synthetic construct]
          Length = 736

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 35/70 (50%), Gaps = 7/70 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78
           T E+  G  EA   LK  +E  K+  +  +        VL VGPPG GKT LA+ VA E 
Sbjct: 298 TFEDVKGCDEAKQELKEVVEFLKSPEKFSNLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 357

Query: 79  GVNFRSTSGP 88
            V F   +GP
Sbjct: 358 KVPFFHAAGP 367


>gi|49474140|ref|YP_032182.1| ATP-dependent protease ATP-binding subunit [Bartonella quintana
           str. Toulouse]
 gi|61211489|sp|Q6G177|CLPX_BARQU RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|49239644|emb|CAF26004.1| ATP-dependent clp protease ATP-binding subunit clpX [Bartonella
           quintana str. Toulouse]
          Length = 424

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L VGP G GKT LAQ +AR + V F       + +AG +   + N+         
Sbjct: 112 AKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 171

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDE+ ++S
Sbjct: 172 YNVERAQRGIVYIDEVDKIS 191


>gi|313893233|ref|ZP_07826810.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Veillonella
           sp. oral taxon 158 str. F0412]
 gi|313442586|gb|EFR61001.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Veillonella
           sp. oral taxon 158 str. F0412]
          Length = 417

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           +VLF+GP G GKT LAQ +A+ L V F       + +AG +   + N+            
Sbjct: 110 NVLFIGPTGSGKTLLAQTLAKMLEVPFAIADATSLTEAGYVGEDVENILLKIIQAADYDI 169

Query: 104 --EDRDVLFIDEIHRLS 118
              +R +++IDEI +++
Sbjct: 170 ARAERGIIYIDEIDKIA 186


>gi|298710281|emb|CBJ31903.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 1242

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 21/34 (61%)

Query: 57   VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
             L  GPPG GKT LA  VA E G+NF S  GP +
Sbjct: 1069 ALLYGPPGCGKTLLAGAVAAECGLNFISVKGPEV 1102


>gi|291550776|emb|CBL27038.1| endopeptidase Clp ATP-binding regulatory subunit (clpX)
           [Ruminococcus torques L2-14]
          Length = 423

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 28/129 (21%)

Query: 18  DISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEA---------LDHVLFVGPP 63
           DI+LL P  ++ F      GQ EA   L V +     R  A           ++L +GP 
Sbjct: 60  DINLLTPEEMKAFLDEYVIGQDEAKKVLSVAVYNHYKRILAEQDLGVELQKSNILMLGPT 119

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------------EDRDVL 109
           G GKT LAQ +A+ L V F       + +AG +   + N+               +  ++
Sbjct: 120 GCGKTLLAQTLAKVLNVPFAIADATALTEAGYVGEDVENILLKVIQAADGDIERAEHGII 179

Query: 110 FIDEIHRLS 118
           +IDEI +++
Sbjct: 180 YIDEIDKIT 188


>gi|317130918|ref|YP_004097200.1| ATPase associated with various cellular activities AAA_3 [Bacillus
           cellulosilyticus DSM 2522]
 gi|315475866|gb|ADU32469.1| ATPase associated with various cellular activities AAA_3 [Bacillus
           cellulosilyticus DSM 2522]
          Length = 309

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 79/175 (45%), Gaps = 28/175 (16%)

Query: 37  CSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKAGD 95
            +NL++ + A  A      HVL  G PG GKT + + +A  LG +F R    P +  +  
Sbjct: 20  STNLRLLLSAVLAGG----HVLIEGVPGTGKTQMVRTLANLLGGDFNRIQFTPDLLPSDI 75

Query: 96  LAALLTNLEDR-----------DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSA 144
             + + N++D            +VL  DEI+R     +  L  AME+ Q+ +  GE    
Sbjct: 76  TGSTIYNMKDSSFETLKGPIFTNVLLADEINRTPAKTQAALLEAMEEKQVTIQ-GETYQL 134

Query: 145 RSVKINLSRFTLIAATTRVGLL-TNPL----QDRFGIPIRLNFYEIEDLKTIVQR 194
             V      F ++A    +    T PL    QDRF   + ++F  +E+ + ++++
Sbjct: 135 DDV------FFVVATQNPIEFEGTYPLPEAQQDRFLFKLLIDFPTLEEEQNVLKQ 183


>gi|237743482|ref|ZP_04573963.1| DNA polymerase III subunit gamma/tau [Fusobacterium sp. 7_1]
 gi|229433261|gb|EEO43473.1| DNA polymerase III subunit gamma/tau [Fusobacterium sp. 7_1]
          Length = 482

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 111/248 (44%), Gaps = 35/248 (14%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP +  E +G+ E   +LK+ ++  K+ A A    LF GP G+GKTT+A+++A+  GVN 
Sbjct: 10  RPSSFSEVSGENEIVKSLKLSLKN-KSMAHAY---LFSGPRGVGKTTIARLIAK--GVNC 63

Query: 83  RS--TSGPVIAKAGDLAAL-------LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
            +   +G    +  +  A+       L  ++      IDEI  L    E+I Y  +E  +
Sbjct: 64  LNLKENGEPCNECKNCKAINEGRFSDLIEIDAASNRSIDEIRSLK---EKINYQPVEGLK 120

Query: 134 LDLMVGEGPSARSVKINLSRFTL---------IAATTRVGLLTNPLQDRFGIPIRLNF-- 182
              ++ E         N    TL         I ATT +  +   +  R     R +F  
Sbjct: 121 KVYIIDEAHMLTKEAFNALLKTLEEPPAHVIFILATTELEKILPTIISRCQ---RYDFKP 177

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            ++E++K  ++   K   L++TD+    I   S G+ R +  +L R+      A+ K I 
Sbjct: 178 LDLEEMKAGLEHILKEENLSMTDDVYPVIYENSSGSMRDSISILERL---IVTANGKEIN 234

Query: 243 REIADAAL 250
            +IA+  L
Sbjct: 235 LKIAEDTL 242


>gi|294656475|ref|XP_458749.2| DEHA2D06688p [Debaryomyces hansenii CBS767]
 gi|199431503|emb|CAG86893.2| DEHA2D06688p [Debaryomyces hansenii]
          Length = 852

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 8/75 (10%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD-- 107
           EA   VL  GPPG GKTT+A  +A EL V F + S P +    +G+    L  + D    
Sbjct: 228 EAPRGVLLYGPPGCGKTTIANALAGELQVPFLNISAPSVVSGMSGESEKKLREIFDEAKT 287

Query: 108 ----VLFIDEIHRLS 118
               ++F+DEI  ++
Sbjct: 288 LAPCIIFMDEIDAIT 302



 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 579 VLLWGPPGCGKTLLAKAVANESRANFISIKGP 610


>gi|186489959|ref|NP_001117460.1| ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding
           [Arabidopsis thaliana]
 gi|332194398|gb|AEE32519.1| P-loop containing NTPase domain-containing protein [Arabidopsis
           thaliana]
          Length = 981

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           +L  GPPG GKT LA+ +A E G NF S +G  +     GD   L   L          +
Sbjct: 730 ILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFATKLAPVI 789

Query: 109 LFIDEIHRL 117
           +F+DEI  L
Sbjct: 790 IFVDEIDSL 798


>gi|171059224|ref|YP_001791573.1| ATP-dependent protease ATP-binding subunit ClpX [Leptothrix
           cholodnii SP-6]
 gi|238689116|sp|B1Y6H2|CLPX_LEPCP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|170776669|gb|ACB34808.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Leptothrix
           cholodnii SP-6]
          Length = 424

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE 104
           A  ++L +GP G GKT LAQ +AR L V F       + +AG +          LL N  
Sbjct: 116 AKSNILLIGPTGSGKTLLAQTLARMLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCN 175

Query: 105 ------DRDVLFIDEIHRLS 118
                  R +++IDEI ++S
Sbjct: 176 YEVERAQRGIVYIDEIDKIS 195


>gi|167577949|ref|ZP_02370823.1| ATP-dependent metalloprotease, FtsH family protein [Burkholderia
           thailandensis TXDOH]
          Length = 662

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 8/72 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL VG PG GKT LA+ VA E GV F STSG    +   G  AA + +L ++       +
Sbjct: 206 VLIVGAPGTGKTLLAKAVAGEAGVPFFSTSGSSFVEMFVGVGAARVRDLFEQAQQKAPCI 265

Query: 109 LFIDEIHRLSII 120
           +FIDE+  L  +
Sbjct: 266 IFIDELDALGKV 277


>gi|170094016|ref|XP_001878229.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164646683|gb|EDR10928.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 359

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 7/64 (10%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL--GV 80
          RP+T++E + Q    + L+  + +       L H+LF GPPG GKT+    +AR+L    
Sbjct: 32 RPKTIDEVSAQEHTVAVLRKTLTSTN-----LPHMLFYGPPGTGKTSTILALARQLFGPD 86

Query: 81 NFRS 84
          NFR+
Sbjct: 87 NFRN 90


>gi|162148814|ref|YP_001603275.1| ATP-dependent protease ATP-binding subunit ClpX [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209545438|ref|YP_002277667.1| ATP-dependent protease ATP-binding subunit ClpX [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|189044136|sp|A9HRV3|CLPX_GLUDA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|161787391|emb|CAP56986.1| ATP-dependent Clp protease ATP-binding subunit [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209533115|gb|ACI53052.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 419

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L VGP G GKT LAQ +AR L V F       + +AG +   + N+         
Sbjct: 109 AKSNILLVGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 168

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDEI ++S
Sbjct: 169 YNVERAQRGIVYIDEIDKIS 188


>gi|159028065|emb|CAO87142.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 617

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISG 228


>gi|119512548|ref|ZP_01631626.1| cell division protein [Nodularia spumigena CCY9414]
 gi|119462809|gb|EAW43768.1| cell division protein [Nodularia spumigena CCY9414]
          Length = 612

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 193 VLLVGPPGTGKTLLARAVAGEAGVPFFSISG 223


>gi|71083580|ref|YP_266299.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus
           Pelagibacter ubique HTCC1062]
 gi|71062693|gb|AAZ21696.1| ATP-dependent clp proteinase regulatory chain X [Candidatus
           Pelagibacter ubique HTCC1062]
          Length = 422

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L VGP G GKT LAQ +AR L V F       + +AG +   + N+            
Sbjct: 110 NILLVGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNV 169

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDE+ ++S
Sbjct: 170 EKAQRGIVYIDEVDKIS 186


>gi|322706939|gb|EFY98518.1| peroxin-1, putative [Metarhizium anisopliae ARSEF 23]
          Length = 1444

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 77/183 (42%), Gaps = 35/183 (19%)

Query: 57   VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
            +L  G PG GKT LA  VA E G+NF S  GP I     G     + +L DR       V
Sbjct: 871  LLLYGYPGCGKTLLASAVAGECGLNFISVKGPEILNKYIGASEKSVRDLFDRAQAAKPCV 930

Query: 109  LFIDEI--------HRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAAT 160
            LF DE         H  + + + ++   +   Q+D   G           LS   ++AAT
Sbjct: 931  LFFDEFDSIAPKRGHDSTGVTDRVVNQLLT--QMDGAEG-----------LSGVYVLAAT 977

Query: 161  TRVGLLTNPL--QDRFGIPIRLNFYEIED----LKTIVQRGAKLTGLAVTDEAACEIAMR 214
            +R  L+   L    R    +  +   +ED    +K + Q+    + L  +D+   EIA R
Sbjct: 978  SRPDLIDPALLRPGRLDKSLLCDLPSLEDRLDIIKALFQKVRLSSELTDSDDGLTEIARR 1037

Query: 215  SRG 217
            + G
Sbjct: 1038 TDG 1040


>gi|332654057|ref|ZP_08419801.1| cell division protein FtsH [Ruminococcaceae bacterium D16]
 gi|332517143|gb|EGJ46748.1| cell division protein FtsH [Ruminococcaceae bacterium D16]
          Length = 724

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 35/69 (50%), Gaps = 7/69 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIE-------AAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  GQ EA  +L+  I+         +  A+     L VGPPG GKT LA+ VA E 
Sbjct: 199 TFRDVAGQDEAKESLQEIIDILHNPQKYTEIGAKLPKGALLVGPPGTGKTLLAKAVAGEA 258

Query: 79  GVNFRSTSG 87
           GV F S SG
Sbjct: 259 GVPFFSISG 267


>gi|302687482|ref|XP_003033421.1| hypothetical protein SCHCODRAFT_54371 [Schizophyllum commune
          H4-8]
 gi|300107115|gb|EFI98518.1| hypothetical protein SCHCODRAFT_54371 [Schizophyllum commune
          H4-8]
          Length = 343

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 6/67 (8%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          +   RP TL++     +  + +  FIE  +     L H+LF GPPG GKT+    VAR +
Sbjct: 29 VEKYRPVTLDDVVSHKDITTTIDKFIEKNR-----LPHLLFYGPPGTGKTSTILAVARRI 83

Query: 79 -GVNFRS 84
           G  +R 
Sbjct: 84 YGPEYRK 90


>gi|296109578|ref|YP_003616527.1| AAA ATPase central domain protein [Methanocaldococcus infernus ME]
 gi|295434392|gb|ADG13563.1| AAA ATPase central domain protein [Methanocaldococcus infernus ME]
          Length = 369

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 12/100 (12%)

Query: 27  LEEFTGQVEACSNLKV---FIEAAKARAE-ALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
            +E  GQ +A    K+   +++  +   E A  +VLF GPPG GKT +A+ +A E   +F
Sbjct: 121 FDEIIGQEDAKKKCKIIMKYLQNPELFGEWAPKNVLFYGPPGTGKTMMARALATETDSSF 180

Query: 83  RSTSGPVI--AKAGDLAALLTNLEDRD------VLFIDEI 114
                P +     GD A ++  L  +       ++FIDE+
Sbjct: 181 IMVKAPELIGEHVGDSAKMIRELYKKASESAPCIIFIDEL 220


>gi|295401966|ref|ZP_06811928.1| ATP-dependent metalloprotease FtsH [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312109217|ref|YP_003987533.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. Y4.1MC1]
 gi|294975968|gb|EFG51584.1| ATP-dependent metalloprotease FtsH [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311214318|gb|ADP72922.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. Y4.1MC1]
          Length = 634

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISG 228


>gi|294873159|ref|XP_002766534.1| replication factor C3, putative [Perkinsus marinus ATCC 50983]
 gi|239867474|gb|EEQ99251.1| replication factor C3, putative [Perkinsus marinus ATCC 50983]
          Length = 354

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+TL++     E    +K F+     +  AL H+L  GPPG GKT+     AR++
Sbjct: 35 RPKTLDDLVAHQEIIETIKRFV-----KMNALPHLLLHGPPGTGKTSTILACARQM 85


>gi|254388632|ref|ZP_05003865.1| cell division protein FtsH [Streptomyces clavuligerus ATCC 27064]
 gi|326441646|ref|ZP_08216380.1| cell division protein FtsH [Streptomyces clavuligerus ATCC 27064]
 gi|197702352|gb|EDY48164.1| cell division protein FtsH [Streptomyces clavuligerus ATCC 27064]
          Length = 661

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 4/58 (6%)

Query: 34  VEACSNLKVFI-EAAKARA---EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VE    +K F+ E AK +A   +    VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 169 VEELQEIKEFLQEPAKFQAVGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISG 226


>gi|197103300|ref|YP_002128678.1| ATP-dependent metalloprotease [Phenylobacterium zucineum HLK1]
 gi|196480576|gb|ACG80103.1| ATP-dependent metalloprotease [Phenylobacterium zucineum HLK1]
          Length = 635

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           VL VGPPG GKT LA+ VA E GV F S +G    +   G  AA + +L ++       +
Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGVKFFSITGSEFVEMFVGVGAARVRDLFEQARAQAPAI 260

Query: 109 LFIDEIHRL 117
           +FIDE+  L
Sbjct: 261 IFIDELDAL 269


>gi|126656220|ref|ZP_01727604.1| cell division protein; FtsH [Cyanothece sp. CCY0110]
 gi|126622500|gb|EAZ93206.1| cell division protein; FtsH [Cyanothece sp. CCY0110]
          Length = 621

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL +GPPG GKT LA+ VA E GV F S SG
Sbjct: 209 VLLIGPPGTGKTLLAKAVAGEAGVPFFSISG 239


>gi|85104882|ref|XP_961826.1| ATP-dependent protease La [Neurospora crassa OR74A]
 gi|74616606|sp|Q7S8C4|LONM_NEUCR RecName: Full=Lon protease homolog, mitochondrial; Flags: Precursor
 gi|28923404|gb|EAA32590.1| ATP-dependent protease La [Neurospora crassa OR74A]
          Length = 1107

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 74/179 (41%), Gaps = 37/179 (20%)

Query: 43  FIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNF------------------R 83
           FI   K R      +L FVGPPG+GKT++ + +AR LG  +                  R
Sbjct: 575 FIAVGKLRGTVEGKILCFVGPPGVGKTSIGKSIARALGRQYYRFSVGGLTDVAEIKGHRR 634

Query: 84  STSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL--------SIIVEEILYPAMEDFQLD 135
           +  G +  +   + AL     +  ++ IDEI ++        S  + E+L P      LD
Sbjct: 635 TYVGALPGRV--IQALKKCKTENPLILIDEIDKIGRGYQGDPSSALLELLDPEQNGSFLD 692

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
             +        V ++LS+   +        +  PL DR  + IRL+ Y  ++   I ++
Sbjct: 693 HYL-------DVPVDLSKVLFVCTANLTDTIPRPLLDRMEV-IRLSGYVADEKMAIAEK 743


>gi|294340352|emb|CAZ88733.1| ATP-dependent Clp protease ATP-binding subunit clpX [Thiomonas sp.
           3As]
          Length = 422

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE 104
           A  ++L VGP G GKT LAQ +AR L V F       + +AG +          LL N  
Sbjct: 113 AKSNILLVGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCN 172

Query: 105 ------DRDVLFIDEIHRLS 118
                  R +++IDEI ++S
Sbjct: 173 YEIERAQRGIVYIDEIDKIS 192


>gi|291528434|emb|CBK94020.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Eubacterium
           rectale M104/1]
          Length = 423

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 69/153 (45%), Gaps = 29/153 (18%)

Query: 1   MMDREGLLSR-NVSQEDADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEAL 54
           +++ EG+    + S    DI+L+ P  L+ F      GQ +A   L V +     R  A 
Sbjct: 44  ILEEEGVEGHEDKSSAKDDINLVTPEELKAFLDDYVIGQDQAKKVLSVAVYNHYKRVLAG 103

Query: 55  D---------HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLT 101
           D         ++L +GP G GKT LAQ +AR + V F       + +AG    D+  +L 
Sbjct: 104 DTSDVELQKSNILMLGPTGSGKTLLAQTLARVINVPFAIADATTLTEAGYVGEDVENILL 163

Query: 102 NL---EDRD-------VLFIDEIHRLSIIVEEI 124
            L    D D       +++IDEI +++   E +
Sbjct: 164 KLIQAADYDIERAEHGIIYIDEIDKITKKSENV 196


>gi|292656040|ref|YP_003535937.1| cell division control protein 48 [Haloferax volcanii DS2]
 gi|291370819|gb|ADE03046.1| cell division control protein 48 [Haloferax volcanii DS2]
          Length = 474

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 16/26 (61%), Positives = 22/26 (84%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF 82
           +LFVGPPG GKTT+++ +A ELG+ F
Sbjct: 221 ILFVGPPGTGKTTVSRALAHELGLPF 246


>gi|290958426|ref|YP_003489608.1| membrane-bound FtsH family protein [Streptomyces scabiei 87.22]
 gi|260647952|emb|CBG71057.1| putative membrane-bound FtsH-family protein [Streptomyces scabiei
           87.22]
          Length = 660

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 4/58 (6%)

Query: 34  VEACSNLKVFI-EAAKARA---EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VE    +K F+ E AK +A   +    VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 169 VEELHEIKEFLQEPAKFQAVGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISG 226


>gi|298489876|ref|YP_003720053.1| ATP-dependent metalloprotease FtsH ['Nostoc azollae' 0708]
 gi|298231794|gb|ADI62930.1| ATP-dependent metalloprotease FtsH ['Nostoc azollae' 0708]
          Length = 613

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 194 VLLVGPPGTGKTLLARAVAGEAGVPFFSISG 224


>gi|172038492|ref|YP_001804993.1| cell division protein [Cyanothece sp. ATCC 51142]
 gi|171699946|gb|ACB52927.1| cell division protein [Cyanothece sp. ATCC 51142]
          Length = 617

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISG 228


>gi|167898139|ref|ZP_02485541.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 7894]
          Length = 666

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 8/72 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL VG PG GKT LA+ VA E GV F STSG    +   G  AA + +L ++       +
Sbjct: 206 VLIVGAPGTGKTLLAKAVAGEAGVPFFSTSGSSFVEMFVGVGAARVRDLFEQAQQKAPCI 265

Query: 109 LFIDEIHRLSII 120
           +FIDE+  L  +
Sbjct: 266 IFIDELDALGKV 277


>gi|125622902|ref|YP_001031385.1| putative cell division protein [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|124491710|emb|CAL96629.1| putative cell division protein [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|300069640|gb|ADJ59040.1| putative cell division protein [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 695

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108
           VL  GPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 229 VLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFENAKKTAPSI 288

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 289 IFIDEI 294


>gi|148553516|ref|YP_001261098.1| ATP-dependent protease ATP-binding subunit ClpX [Sphingomonas
           wittichii RW1]
 gi|166215208|sp|A5V3U4|CLPX_SPHWW RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|148498706|gb|ABQ66960.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sphingomonas
           wittichii RW1]
          Length = 424

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L VGP G GKT LAQ +AR L V F       + +AG +   + N+         
Sbjct: 111 AKSNILLVGPTGSGKTLLAQTMARLLDVPFTMADATTLTEAGYVGEDVENIILKLLQASD 170

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDEI ++S
Sbjct: 171 YNVERAQRGIVYIDEIDKIS 190


>gi|110803261|ref|YP_699726.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens SM101]
 gi|110683762|gb|ABG87132.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens SM101]
          Length = 601

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 194 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 224


>gi|56418597|ref|YP_145915.1| cell-division protein and general stress protein [Geobacillus
           kaustophilus HTA426]
 gi|56378439|dbj|BAD74347.1| cell-division protein and general stress protein (class III
           heat-shock) [Geobacillus kaustophilus HTA426]
          Length = 632

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISG 228


>gi|312113124|ref|YP_004010720.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Rhodomicrobium
           vannielii ATCC 17100]
 gi|311218253|gb|ADP69621.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Rhodomicrobium vannielii ATCC 17100]
          Length = 422

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+         
Sbjct: 111 AKSNILLIGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 170

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDE+ ++S
Sbjct: 171 YNVDRAQRGIVYIDEVDKIS 190


>gi|229820511|ref|YP_002882037.1| Shikimate kinase [Beutenbergia cavernae DSM 12333]
 gi|229566424|gb|ACQ80275.1| Shikimate kinase [Beutenbergia cavernae DSM 12333]
          Length = 173

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 20/38 (52%), Positives = 26/38 (68%)

Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG 94
          V+ VGPPG GKTT++ ++A  LGV+ R T   V A AG
Sbjct: 6  VVLVGPPGSGKTTVSALLAAALGVDVRDTDADVEATAG 43


>gi|184201574|ref|YP_001855781.1| cell division protein FtsH [Kocuria rhizophila DC2201]
 gi|183581804|dbj|BAG30275.1| ATP-dependent protease FtsH [Kocuria rhizophila DC2201]
          Length = 709

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 91/222 (40%), Gaps = 42/222 (18%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108
           VL  GPPG GKT LA+ VA E GV F S SG       V   A  +  L    ++    +
Sbjct: 206 VLLYGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFQQAKENAPAI 265

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINL-----------SRFTLI 157
           +F+DEI  +               Q    +G G   R   +N            +   LI
Sbjct: 266 IFVDEIDAVG-------------RQRGAGMGGGNDEREQTLNQLLVEMDGFDANTNVILI 312

Query: 158 AATTRVGLLTNPL--QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRS 215
           AAT R  +L   L    RF   I ++  +++  + I++  AK   LA       ++A  +
Sbjct: 313 AATNRPDVLDPALLRPGRFDRQIGVDAPDMKGREQILRVHAKNKPLAQN----VDLASVA 368

Query: 216 RGTPRIAGRLLRRVRDFAEV----AHAKTITREIADAALLRL 253
           + TP   G  L  V + A +    +HA+ I     D A+ R+
Sbjct: 369 KRTPGFTGAELANVMNEAALLTARSHAQLIDDRAVDEAIDRV 410


>gi|182678216|ref|YP_001832362.1| ATP-dependent metalloprotease FtsH [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182634099|gb|ACB94873.1| ATP-dependent metalloprotease FtsH [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 617

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           +L VGPPG GKT LA+ VA E GV F S SG    +   G  AA + +L ++       +
Sbjct: 198 ILLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEMFVGVGAARVRDLFEQARKAAPCI 257

Query: 109 LFIDEIHRL 117
           +FIDE+  L
Sbjct: 258 IFIDELDAL 266


>gi|188584723|ref|YP_001916268.1| FtsH-2 peptidase. Metallo peptidase. MEROPS family M41, membrane
           protease FtsH catalytic subunit [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|310946749|sp|B2A3Q4|FTSH_NATTJ RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|179349410|gb|ACB83680.1| FtsH-2 peptidase. Metallo peptidase. MEROPS family M41, membrane
           protease FtsH catalytic subunit [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 693

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT L + VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 190 VLLVGPPGTGKTLLGRAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNSPCI 249

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 250 VFIDEI 255


>gi|167922700|ref|ZP_02509791.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei
           BCC215]
          Length = 666

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 8/72 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL VG PG GKT LA+ VA E GV F STSG    +   G  AA + +L ++       +
Sbjct: 206 VLIVGAPGTGKTLLAKAVAGEAGVPFFSTSGSSFVEMFVGVGAARVRDLFEQAQQKAPCI 265

Query: 109 LFIDEIHRLSII 120
           +FIDE+  L  +
Sbjct: 266 IFIDELDALGKV 277


>gi|126657611|ref|ZP_01728766.1| cell division protein; FtsH [Cyanothece sp. CCY0110]
 gi|126621067|gb|EAZ91781.1| cell division protein; FtsH [Cyanothece sp. CCY0110]
          Length = 617

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISG 228


>gi|167914858|ref|ZP_02501949.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 112]
          Length = 659

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 8/72 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL VG PG GKT LA+ VA E GV F STSG    +   G  AA + +L ++       +
Sbjct: 199 VLIVGAPGTGKTLLAKAVAGEAGVPFFSTSGSSFVEMFVGVGAARVRDLFEQAQQKAPCI 258

Query: 109 LFIDEIHRLSII 120
           +FIDE+  L  +
Sbjct: 259 IFIDELDALGKV 270


>gi|67640886|ref|ZP_00439678.1| ATP-dependent metallopeptidase HflB [Burkholderia mallei GB8 horse
           4]
 gi|251767920|ref|ZP_04820323.1| ATP-dependent metallopeptidase HflB [Burkholderia mallei PRL-20]
 gi|254174450|ref|ZP_04881112.1| ATP-dependent metalloprotease, FtsH family [Burkholderia mallei
           ATCC 10399]
 gi|160695496|gb|EDP85466.1| ATP-dependent metalloprotease, FtsH family [Burkholderia mallei
           ATCC 10399]
 gi|238521691|gb|EEP85141.1| ATP-dependent metallopeptidase HflB [Burkholderia mallei GB8 horse
           4]
 gi|243061367|gb|EES43553.1| ATP-dependent metallopeptidase HflB [Burkholderia mallei PRL-20]
          Length = 659

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 8/72 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL VG PG GKT LA+ VA E GV F STSG    +   G  AA + +L ++       +
Sbjct: 199 VLIVGAPGTGKTLLAKAVAGEAGVPFFSTSGSSFVEMFVGVGAARVRDLFEQAQQKAPCI 258

Query: 109 LFIDEIHRLSII 120
           +FIDE+  L  +
Sbjct: 259 IFIDELDALGKV 270


>gi|309790742|ref|ZP_07685291.1| ATP-dependent metalloprotease FtsH [Oscillochloris trichoides DG6]
 gi|308227233|gb|EFO80912.1| ATP-dependent metalloprotease FtsH [Oscillochloris trichoides DG6]
          Length = 653

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 21/30 (70%), Positives = 22/30 (73%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTS 86
           VL VGPPG GKT LA+ VA E GV F STS
Sbjct: 214 VLLVGPPGTGKTLLAKAVAGEAGVPFFSTS 243


>gi|307183818|gb|EFN70466.1| Katanin p60 ATPase-containing subunit A-like 2 [Camponotus
           floridanus]
          Length = 493

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRS-TSGPVIAKA-GDLAA---LLTNLEDR---DV 108
           VL  GPPG GKT LA+ VA E    F + TS  +I+K  GD      +LT+L       +
Sbjct: 251 VLLYGPPGTGKTMLAKAVATECQSTFFNITSSSIISKWRGDSEKYIRVLTDLAKHYAPTI 310

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 311 IFIDEI 316


>gi|302553170|ref|ZP_07305512.1| cell division protein FtsH [Streptomyces viridochromogenes DSM
           40736]
 gi|302470788|gb|EFL33881.1| cell division protein FtsH [Streptomyces viridochromogenes DSM
           40736]
          Length = 669

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 4/58 (6%)

Query: 34  VEACSNLKVFI-EAAKARA---EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VE    +K F+ E AK +A   +    VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 170 VEELHEIKEFLQEPAKFQAVGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISG 227


>gi|300784640|ref|YP_003764931.1| shikimate kinase [Amycolatopsis mediterranei U32]
 gi|299794154|gb|ADJ44529.1| shikimate kinase [Amycolatopsis mediterranei U32]
          Length = 175

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 69/163 (42%), Gaps = 19/163 (11%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           + VGPPG GK+T+  ++A  LGV FR +   V+A+AG   +        D+   D     
Sbjct: 7   VIVGPPGSGKSTVGPLLAAALGVEFRDSDDDVVARAGRSIS--------DIFAEDGEAAF 58

Query: 118 SIIVEEILYPAMEDFQLDLMVGEG-PSARSVKINLSRFTLI-------AATTRVGLLT-N 168
             + EE +  A+ +    L +G G P     +  L+  T++       A   R GL +  
Sbjct: 59  RALEEEAVATALAEHDGVLALGGGAPLTPGTRARLAEHTVVFLGVGLAAGVQRTGLSSAR 118

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEI 211
           PL    G+  R  F ++ D +  V R      +   D    EI
Sbjct: 119 PLL--AGVNPRATFKKLLDERVPVYREVATVEIVTDDRTPSEI 159


>gi|289423563|ref|ZP_06425364.1| recombination factor protein RarA [Peptostreptococcus anaerobius
           653-L]
 gi|289156065|gb|EFD04729.1| recombination factor protein RarA [Peptostreptococcus anaerobius
           653-L]
          Length = 423

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 65/141 (46%), Gaps = 8/141 (5%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+ +E+  GQ       K+F    +       +++F G PG+GKTT+A+++A     +F
Sbjct: 8   RPKKIEDIVGQSHIVGKGKLFNNMLEKNYYP--NMIFFGGPGIGKTTVAEILASSADKSF 65

Query: 83  R--STSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138
              + S   +     +   +  L++ +  +L+IDEI   +   ++ +   +E   + L+ 
Sbjct: 66  YKINASNSSLEDIKKVIGQIGKLDNSNGILLYIDEIQSFNKKQQQSILEFIEKGDITLIA 125

Query: 139 G--EGPSARSVKINLSRFTLI 157
              E P     K  LSR  +I
Sbjct: 126 STTENPYHYVYKAILSRSVVI 146


>gi|282895979|ref|ZP_06304010.1| Peptidase M41, FtsH [Raphidiopsis brookii D9]
 gi|281199089|gb|EFA73959.1| Peptidase M41, FtsH [Raphidiopsis brookii D9]
          Length = 613

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 194 VLLVGPPGTGKTLLARAVAGEAGVPFFSISG 224


>gi|239988693|ref|ZP_04709357.1| putative cell division protein FtsH [Streptomyces roseosporus NRRL
           11379]
          Length = 684

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 4/58 (6%)

Query: 34  VEACSNLKVFI-EAAKARA---EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VE    +K F+ E AK +A   +    VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 182 VEELHEIKEFLQEPAKFQAVGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISG 239


>gi|239929769|ref|ZP_04686722.1| cell division protein ftsH-like protein [Streptomyces ghanaensis
           ATCC 14672]
 gi|291438095|ref|ZP_06577485.1| cell division protein ftsH-like protein [Streptomyces ghanaensis
           ATCC 14672]
 gi|291340990|gb|EFE67946.1| cell division protein ftsH-like protein [Streptomyces ghanaensis
           ATCC 14672]
          Length = 668

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 4/58 (6%)

Query: 34  VEACSNLKVFI-EAAKARA---EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VE    +K F+ E AK +A   +    VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 169 VEELHEIKEFLQEPAKFQAVGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISG 226


>gi|237747782|ref|ZP_04578262.1| ATP-dependent protease ATP-binding subunit [Oxalobacter formigenes
           OXCC13]
 gi|229379144|gb|EEO29235.1| ATP-dependent protease ATP-binding subunit [Oxalobacter formigenes
           OXCC13]
          Length = 423

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L VGP G GKT LAQ +AR L V F       + +AG +   + N+            
Sbjct: 116 NILLVGPTGSGKTLLAQTLARMLNVPFVIADATTLTEAGYVGEDVENIIQKLLQGCEYDV 175

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 176 EKAQRGIVYIDEIDKIS 192


>gi|297192938|ref|ZP_06910336.1| cell division protein FtsH [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297151567|gb|EDY66565.2| cell division protein FtsH [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 680

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 4/58 (6%)

Query: 34  VEACSNLKVFI-EAAKARA---EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VE    +K F+ E AK +A   +    VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 180 VEELHEIKEFLQEPAKFQAVGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISG 237


>gi|224372652|ref|YP_002607024.1| endopeptidase clp ATP-binding chain a [Nautilia profundicola AmH]
 gi|223589193|gb|ACM92929.1| endopeptidase clp ATP-binding chain a [Nautilia profundicola AmH]
          Length = 720

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 76/175 (43%), Gaps = 30/175 (17%)

Query: 3   DREGLLSR--NVSQEDA-DISLLRPRTLE-----EFTGQVEACSNLKVFIEAAKA----R 50
           D EG++++  N+ +E A +  + + R LE     +  GQ +A   L   I+  KA     
Sbjct: 402 DIEGIVAKIANIPKESASNNEIEKLRNLEGNLKAKVFGQDQAIKELVKVIKRKKAGLTRE 461

Query: 51  AEALDHVLFVGPPGLGKTTLAQVVARELGVNFR------------------STSGPVIAK 92
            + +   LFVGP G+GKT +A+ +A  LGVNF                   S  G V  +
Sbjct: 462 DKPIGSFLFVGPTGVGKTEIAKQLASILGVNFMRFDMSEYQEKHSVAKLIGSPPGYVGYE 521

Query: 93  AGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSV 147
            G L       +   VL +DEI +    + +IL   M++  L    G     R+V
Sbjct: 522 KGGLLTEAIRKQPHTVLLLDEIEKAHPDIVQILLQVMDNASLTDNDGRKADFRNV 576


>gi|172036868|ref|YP_001803369.1| cell division protein [Cyanothece sp. ATCC 51142]
 gi|171698322|gb|ACB51303.1| cell division protein [Cyanothece sp. ATCC 51142]
          Length = 636

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL +GPPG GKT LA+ VA E GV F S SG
Sbjct: 225 VLLIGPPGTGKTLLAKAVAGEAGVPFFSISG 255


>gi|146164901|ref|XP_001014311.2| Adenylate kinase family protein [Tetrahymena thermophila]
 gi|146145641|gb|EAR94066.2| Adenylate kinase family protein [Tetrahymena thermophila SB210]
          Length = 436

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 39/61 (63%), Gaps = 3/61 (4%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPV---IAKAGDLAALLTNLEDRDVLFIDE 113
           +L +GPPG G++TLA+ +A++ G+ + ST+  +   IAK  ++  +  NL +R  L  DE
Sbjct: 258 ILVIGPPGSGRSTLAKKLAQKYGLVYVSTTELISDQIAKKTEVGRVALNLLNRGELVPDE 317

Query: 114 I 114
           I
Sbjct: 318 I 318


>gi|120602776|ref|YP_967176.1| ATP-dependent protease La [Desulfovibrio vulgaris DP4]
 gi|120563005|gb|ABM28749.1| ATP-dependent proteinase, Serine peptidase, MEROPS family S16
           [Desulfovibrio vulgaris DP4]
          Length = 821

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 89/228 (39%), Gaps = 67/228 (29%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           +  VGPPG+GKT+LA+ VA+  G  F R + G V  +A              G +   L 
Sbjct: 364 LCLVGPPGVGKTSLAKSVAKATGREFVRLSLGGVRDEAEIRGHRRTYVGALPGKIIQSLK 423

Query: 102 NLEDRDVLF-IDEIHRLSI--------IVEEILYP----AMEDFQLDLMVGEGPSARSVK 148
            ++  + LF +DEI ++S          + E+L P       D  LD+            
Sbjct: 424 RVKHNNPLFCLDEIDKMSTDFRGDPSSALLEVLDPEQNSTFNDHYLDM-----------D 472

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY-EIEDL---------KTIVQRGAKL 198
            +LS+   I     +  +  PLQDR  I IRL  Y E E           K +   G   
Sbjct: 473 YDLSQVFFITTANSLHSIPLPLQDRMEI-IRLPGYLETEKRRIAHDFLLPKQVEAHGLAA 531

Query: 199 TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           + L ++D A  EI                 +R +   A  + + REIA
Sbjct: 532 SNLRISDNAVLEI-----------------IRSYTREAGVRNLEREIA 562


>gi|63054416|ref|NP_587809.2| 19S proteasome regulatory subunit Rpt4 (predicted)
           [Schizosaccharomyces pombe 972h-]
 gi|46397658|sp|O74445|PRS10_SCHPO RecName: Full=Probable 26S protease subunit rpt4
 gi|157310490|emb|CAA20682.2| 19S proteasome regulatory subunit Rpt4 (predicted)
           [Schizosaccharomyces pombe]
          Length = 388

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA-GDLAALLTNL------EDRDV 108
           VL  GPPG GKT LA+ VA  LGVNF +  S  ++ K  G+ A ++  +       +  V
Sbjct: 169 VLLYGPPGTGKTLLARAVAASLGVNFLKVVSSAIVDKYIGESARIIREMFGYAKEHEPCV 228

Query: 109 LFIDEI 114
           +F+DEI
Sbjct: 229 IFMDEI 234


>gi|11498895|ref|NP_070126.1| cell division protein CDC48 [Archaeoglobus fulgidus DSM 4304]
 gi|41688749|sp|O28972|Y1297_ARCFU RecName: Full=Cell division cycle protein 48 homolog AF_1297
 gi|2649281|gb|AAB89948.1| cell division control protein 48, AAA family (cdc48-1)
           [Archaeoglobus fulgidus DSM 4304]
          Length = 733

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 8/76 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DV 108
           VL  GPPG GKT +A+ VA E+  +F   SGP I     G+    L  + +        +
Sbjct: 219 VLLYGPPGTGKTLIAKAVANEVDAHFIPISGPEIMSKYYGESEQRLREIFEEAKENAPSI 278

Query: 109 LFIDEIHRLSIIVEEI 124
           +FIDEI  ++   EE+
Sbjct: 279 IFIDEIDSIAPKREEV 294



 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 492 ILLFGPPGTGKTLLAKAVANESNANFISVKGP 523


>gi|304319807|ref|YP_003853450.1| ATP-dependent protease ATP-binding subunit [Parvularcula
           bermudensis HTCC2503]
 gi|303298710|gb|ADM08309.1| ATP-dependent protease ATP-binding subunit [Parvularcula
           bermudensis HTCC2503]
          Length = 437

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L VGP G GKT LAQ +AR L V F       + +AG +   + N+         
Sbjct: 124 AKSNILLVGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIVLKLLQSAD 183

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDEI ++S
Sbjct: 184 YNVERAQRGIVYIDEIDKIS 203


>gi|167036973|ref|YP_001664551.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320115391|ref|YP_004185550.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|166855807|gb|ABY94215.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319928482|gb|ADV79167.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 510

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 52/121 (42%), Gaps = 16/121 (13%)

Query: 10  RNVSQEDADISLLRPR-TLEEFTGQVEACSNLKVFIE-------AAKARAEALDHVLFVG 61
            N+++   D S  +   T ++  G  E    LKV I+         K  A+    +LF G
Sbjct: 65  NNITETKEDTSHRKTNITFKDVAGLDEVIDELKVIIDFMTNTEKYNKMGAKIPKGILFYG 124

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DVLFIDE 113
           PPG GKT LA  +A E    F S SG       V   A  + AL    +     ++FIDE
Sbjct: 125 PPGTGKTLLATALAGETNSTFISASGSEFVEKYVGVGASRIRALFAKAKKSAPSIIFIDE 184

Query: 114 I 114
           I
Sbjct: 185 I 185


>gi|116510861|ref|YP_808077.1| FtsH-2 peptidase [Lactococcus lactis subsp. cremoris SK11]
 gi|116106515|gb|ABJ71655.1| membrane protease FtsH catalytic subunit [Lactococcus lactis subsp.
           cremoris SK11]
          Length = 695

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108
           VL  GPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 229 VLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFENAKKTAPSI 288

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 289 IFIDEI 294


>gi|113476779|ref|YP_722840.1| FtsH peptidase [Trichodesmium erythraeum IMS101]
 gi|122964671|sp|Q10ZF7|FTSH_TRIEI RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|110167827|gb|ABG52367.1| FtsH peptidase homologue, chloroplast. Metallo peptidase. MEROPS
           family M41 [Trichodesmium erythraeum IMS101]
          Length = 667

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 239 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 269


>gi|186684974|ref|YP_001868170.1| ATP-dependent metalloprotease FtsH [Nostoc punctiforme PCC 73102]
 gi|186467426|gb|ACC83227.1| ATP-dependent metalloprotease FtsH [Nostoc punctiforme PCC 73102]
          Length = 613

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 194 VLLVGPPGTGKTLLARAVAGEAGVPFFSISG 224


>gi|331090537|ref|ZP_08339390.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330405880|gb|EGG85408.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 415

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 28/130 (21%)

Query: 17  ADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEA---------LDHVLFVGP 62
            +I+LL+P  ++ F      GQ EA   L V +     R  A           ++L +GP
Sbjct: 57  GEINLLKPEEMKAFLDDYVIGQDEAKKVLSVAVYNHYKRIMAEKDLGVELHKSNILMLGP 116

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRD-------V 108
            G GKT LAQ +A+ L V F       + +AG +   + N+        D D       +
Sbjct: 117 TGCGKTLLAQTLAKVLNVPFAIADATALTEAGYVGEDVENILLKIIQAADGDIQRAEYGI 176

Query: 109 LFIDEIHRLS 118
           ++IDEI +++
Sbjct: 177 IYIDEIDKIT 186


>gi|329770458|ref|ZP_08261837.1| hypothetical protein HMPREF0433_01601 [Gemella sanguinis M325]
 gi|328836313|gb|EGF85979.1| hypothetical protein HMPREF0433_01601 [Gemella sanguinis M325]
          Length = 566

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 6/60 (10%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH-VLFVGPPGLGKTTLAQVVARELGVN 81
          RP+T  +  GQ    S LK  IE  +     + H  LF GP G GKT++A++ A E+  N
Sbjct: 10 RPQTFNDIVGQNHIVSVLKNAIEKNQ-----ISHAYLFYGPRGTGKTSIAKIFANEVNKN 64


>gi|319405543|emb|CBI79162.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bartonella
           sp. AR 15-3]
          Length = 424

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L VGP G GKT LAQ +AR + V F       + +AG +   + N+         
Sbjct: 112 AKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQSAD 171

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDE+ ++S
Sbjct: 172 YNVERAQRGIVYIDEVDKIS 191


>gi|297159329|gb|ADI09041.1| cell division protein ftsH-like protein [Streptomyces
           bingchenggensis BCW-1]
          Length = 678

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 4/58 (6%)

Query: 34  VEACSNLKVFI-EAAKARA---EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VE    +K F+ E AK +A   +    VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 182 VEELQEIKEFLQEPAKFQAVGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISG 239


>gi|260439221|ref|ZP_05793037.1| cell division protein FtsH [Butyrivibrio crossotus DSM 2876]
 gi|292808236|gb|EFF67441.1| cell division protein FtsH [Butyrivibrio crossotus DSM 2876]
          Length = 646

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 37/69 (53%), Gaps = 7/69 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIE--AAKARAEAL-----DHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ EA  ++K  ++     A+  A+        L VGPPG GKT LA+ VA E 
Sbjct: 194 TFKDVAGQEEAKESVKEIVDFLHNPAKYTAIGAKLPKGALLVGPPGTGKTLLAKAVAGEA 253

Query: 79  GVNFRSTSG 87
           GV F S SG
Sbjct: 254 GVPFFSLSG 262


>gi|257419844|ref|ZP_05596838.1| ATPase [Enterococcus faecalis T11]
 gi|257161672|gb|EEU91632.1| ATPase [Enterococcus faecalis T11]
          Length = 368

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 76/161 (47%), Gaps = 24/161 (14%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRST--SGPVIAKAGDLAALLTNLEDRD-----V 108
           H+L  GPPG GKT+LA+ ++ ++G+   +    G V +  G  A  +  + D       V
Sbjct: 119 HLLLYGPPGTGKTSLARFISLQVGLPLVTARLDGLVSSMLGSTAKNIRKIFDFASKQPCV 178

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRF----TLIAATTRVG 164
           LF+DE   L+ I ++      E  +L  +V       S+  N+  F     LIAAT    
Sbjct: 179 LFLDEFDVLAKIRDD----KNELGELKRVVN------SLLQNIDSFDDNSILIAATNHPQ 228

Query: 165 LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTD 205
           LL   +  RF   I+LN  E E  K +++   + +G+  T+
Sbjct: 229 LLDEAVWRRFDKVIKLNLPESEQRKELIE---EFSGVLTTN 266


>gi|298491599|ref|YP_003721776.1| ATP-dependent metalloprotease FtsH ['Nostoc azollae' 0708]
 gi|298233517|gb|ADI64653.1| ATP-dependent metalloprotease FtsH ['Nostoc azollae' 0708]
          Length = 645

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 210 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 240


>gi|254385665|ref|ZP_05000988.1| cell division protein FtsH [Streptomyces sp. Mg1]
 gi|194344533|gb|EDX25499.1| cell division protein FtsH [Streptomyces sp. Mg1]
          Length = 673

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 4/58 (6%)

Query: 34  VEACSNLKVFI-EAAKARA---EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VE    +K F+ E AK +A   +    VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 180 VEELHEIKEFLQEPAKFQAVGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISG 237


>gi|170089903|ref|XP_001876174.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164649434|gb|EDR13676.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 361

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI-----AKAGDLAALLTNLEDR---DV 108
           VL  GPPG GKT LA+ +A+E G  F + +  V+      ++  L A L +L  +    +
Sbjct: 122 VLLFGPPGCGKTMLAKALAKESGATFINIAASVLTNKWYGESNKLVAGLFSLARKTQPSI 181

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 182 IFIDEI 187


>gi|146093972|ref|XP_001467097.1| AAA family ATPase-like protein [Leishmania infantum JPCM5]
 gi|134071461|emb|CAM70150.1| AAA family ATPase-like protein [Leishmania infantum JPCM5]
          Length = 1049

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDRD------V 108
           VL  GPPG  KT LA+ +A E  +NF S  GP V +K  GD    + ++ +R       V
Sbjct: 817 VLLYGPPGCSKTMLAKALANESHMNFISVKGPEVFSKWVGDSEKAVRDIFERARAASPCV 876

Query: 109 LFIDEI 114
           +FIDE+
Sbjct: 877 VFIDEL 882


>gi|110668990|ref|YP_658801.1| AAA-type ATPase [Haloquadratum walsbyi DSM 16790]
 gi|109626737|emb|CAJ53204.1| AAA-type ATPase [Haloquadratum walsbyi DSM 16790]
          Length = 491

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 16/26 (61%), Positives = 22/26 (84%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF 82
           +LFVGPPG GKTT+++ +A ELG+ F
Sbjct: 246 ILFVGPPGTGKTTVSRALAHELGLPF 271


>gi|39998283|ref|NP_954234.1| ATP-dependent protease La [Geobacter sulfurreducens PCA]
 gi|39985229|gb|AAR36584.1| ATP-dependent protease La [Geobacter sulfurreducens PCA]
          Length = 819

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 77/177 (43%), Gaps = 33/177 (18%)

Query: 43  FIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA------- 93
           F+   K R +    +L FVGPPG+GKT+L + +AR LG  F R + G V  +A       
Sbjct: 345 FLAVRKLRKKMKGPILCFVGPPGVGKTSLGKSIARALGRKFVRISLGGVRDEAEIRGHRR 404

Query: 94  ---GDLAA-LLTNLE----DRDVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLM 137
              G L   ++  L+    +  V  +DE+ +L        S  + E+L P       D  
Sbjct: 405 TYVGALPGRIIQGLKQAGSNNPVFMLDELDKLGADFRGDPSSALLEVLDPEQNHMFSDHY 464

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           +       ++  NLS    IA   +   +  PL DR  + I L+ Y  E+   I +R
Sbjct: 465 I-------NLPFNLSNVMFIATANQYDTIPGPLLDRMEM-INLSGYTEEEKLEIAKR 513


>gi|22298276|ref|NP_681523.1| cell division protein [Thermosynechococcus elongatus BP-1]
 gi|22294455|dbj|BAC08285.1| cell division protein [Thermosynechococcus elongatus BP-1]
          Length = 631

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 212 VLLVGPPGTGKTMLAKAIAGEAGVPFFSISG 242


>gi|20093445|ref|NP_613292.1| replication factor C large subunit [Methanopyrus kandleri AV19]
 gi|42559499|sp|Q8TZC5|RFCL_METKA RecName: Full=Replication factor C large subunit; Short=RFC large
          subunit; AltName: Full=Clamp loader large subunit
 gi|19886264|gb|AAM01222.1| Replication factor C (ATPase involved in DNA replication)
          [Methanopyrus kandleri AV19]
          Length = 510

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 1/64 (1%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFI-EAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
          +   RPR+L+E   Q EA   L  +  E A+        VL  GPPG GKT+ A  +A +
Sbjct: 5  VEKYRPRSLKELVNQDEAKKELAAWANEWARGSIPEPRAVLLHGPPGTGKTSAAYALAHD 64

Query: 78 LGVN 81
           G +
Sbjct: 65 FGWD 68


>gi|17232428|ref|NP_488976.1| cell division protein [Nostoc sp. PCC 7120]
 gi|17134074|dbj|BAB76635.1| cell division protein [Nostoc sp. PCC 7120]
          Length = 645

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 210 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 240


>gi|325969252|ref|YP_004245444.1| ATPase AAA [Vulcanisaeta moutnovskia 768-28]
 gi|323708455|gb|ADY01942.1| AAA ATPase central domain protein [Vulcanisaeta moutnovskia
          768-28]
          Length = 327

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 5/66 (7%)

Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
          S+E   +   RP  +++   Q    + +K  +         + H+LF GPPG GKTT+A 
Sbjct: 3  SEETLWVEKYRPSRIDDIIDQDHVKARVKEMLANGN-----IPHLLFFGPPGTGKTTMAL 57

Query: 73 VVAREL 78
           +AREL
Sbjct: 58 AIAREL 63


>gi|284929519|ref|YP_003422041.1| membrane protease FtsH catalytic subunit [cyanobacterium UCYN-A]
 gi|284809963|gb|ADB95660.1| membrane protease FtsH catalytic subunit [cyanobacterium UCYN-A]
          Length = 618

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISG 228


>gi|282901690|ref|ZP_06309606.1| Peptidase M41, FtsH [Cylindrospermopsis raciborskii CS-505]
 gi|281193453|gb|EFA68434.1| Peptidase M41, FtsH [Cylindrospermopsis raciborskii CS-505]
          Length = 613

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 194 VLLVGPPGTGKTLLARAVAGEAGVPFFSISG 224


>gi|239942227|ref|ZP_04694164.1| putative cell division protein FtsH [Streptomyces roseosporus NRRL
           15998]
 gi|291445681|ref|ZP_06585071.1| cell division protein FtsH [Streptomyces roseosporus NRRL 15998]
 gi|291348628|gb|EFE75532.1| cell division protein FtsH [Streptomyces roseosporus NRRL 15998]
          Length = 673

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 4/58 (6%)

Query: 34  VEACSNLKVFI-EAAKARA---EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VE    +K F+ E AK +A   +    VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 171 VEELHEIKEFLQEPAKFQAVGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISG 228


>gi|297201400|ref|ZP_06918797.1| cell division protein FtsH [Streptomyces sviceus ATCC 29083]
 gi|197713809|gb|EDY57843.1| cell division protein FtsH [Streptomyces sviceus ATCC 29083]
          Length = 666

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 4/58 (6%)

Query: 34  VEACSNLKVFI-EAAKARA---EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VE    +K F+ E AK +A   +    VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 169 VEELQEIKEFLQEPAKFQAVGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISG 226


>gi|195346897|ref|XP_002039991.1| GM15603 [Drosophila sechellia]
 gi|194135340|gb|EDW56856.1| GM15603 [Drosophila sechellia]
          Length = 739

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 35/70 (50%), Gaps = 7/70 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78
           T E+  G  EA   LK  +E  K+  +  +        VL VGPPG GKT LA+ VA E 
Sbjct: 301 TFEDVKGCDEAKQELKEVVEFLKSPEKFSNLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 360

Query: 79  GVNFRSTSGP 88
            V F   +GP
Sbjct: 361 KVPFFHAAGP 370


>gi|186489957|ref|NP_175433.2| ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding
           [Arabidopsis thaliana]
 gi|332194397|gb|AEE32518.1| P-loop containing NTPase domain-containing protein [Arabidopsis
           thaliana]
          Length = 1003

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           +L  GPPG GKT LA+ +A E G NF S +G  +     GD   L   L          +
Sbjct: 752 ILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFATKLAPVI 811

Query: 109 LFIDEIHRL 117
           +F+DEI  L
Sbjct: 812 IFVDEIDSL 820


>gi|167839738|ref|ZP_02466422.1| ATP-dependent metalloprotease, FtsH family protein [Burkholderia
           thailandensis MSMB43]
          Length = 660

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 8/72 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL VG PG GKT LA+ VA E GV F STSG    +   G  AA + +L ++       +
Sbjct: 206 VLIVGAPGTGKTLLAKAVAGEAGVPFFSTSGSSFVEMFVGVGAARVRDLFEQAQQKAPCI 265

Query: 109 LFIDEIHRLSII 120
           +FIDE+  L  +
Sbjct: 266 IFIDELDALGKV 277


>gi|153812538|ref|ZP_01965206.1| hypothetical protein RUMOBE_02937 [Ruminococcus obeum ATCC 29174]
 gi|149831463|gb|EDM86551.1| hypothetical protein RUMOBE_02937 [Ruminococcus obeum ATCC 29174]
          Length = 595

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 30/60 (50%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           EE    VE    LK   +     A     V+ VGPPG GKT LA+ VA E GV F S SG
Sbjct: 153 EEKEDLVEVVDFLKAPQKYTNVGARIPKGVILVGPPGTGKTLLAKAVAGEAGVPFFSISG 212


>gi|145239089|ref|XP_001392191.1| hypothetical protein ANI_1_94074 [Aspergillus niger CBS 513.88]
 gi|134076694|emb|CAK45225.1| unnamed protein product [Aspergillus niger]
          Length = 736

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 34/72 (47%), Gaps = 3/72 (4%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           ADI  L     E  T  VE   N +++   A     A   VL  GPPG GKT LA+ VA 
Sbjct: 476 ADIGALGGIRDELSTAIVEPIKNPEIY---ANVGITAPTGVLLWGPPGCGKTLLAKAVAN 532

Query: 77  ELGVNFRSTSGP 88
           E   NF S  GP
Sbjct: 533 ESRANFISVKGP 544



 Score = 39.7 bits (91), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL  GPPG GKT +A   A ELGV F S S P +
Sbjct: 206 VLLHGPPGCGKTMIANAFAAELGVPFISISAPSV 239


>gi|145589118|ref|YP_001155715.1| ATP-dependent protease ATP-binding subunit [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|226706594|sp|A4SXD7|CLPX_POLSQ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|145047524|gb|ABP34151.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 453

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD------------LAALL 100
           A  ++L +GP G GKT LAQ +AR L V F       + +AG             L A  
Sbjct: 140 AKSNILLIGPTGSGKTLLAQTLARMLDVPFVMADATTLTEAGYVGEDVENIIQKLLQACD 199

Query: 101 TNLE--DRDVLFIDEIHRLS 118
            N+E   R +++IDEI ++S
Sbjct: 200 YNVEKAQRGIVYIDEIDKIS 219


>gi|83717168|ref|YP_439494.1| ATP-dependent metalloprotease FtsH [Burkholderia thailandensis
           E264]
 gi|167616072|ref|ZP_02384707.1| ATP-dependent metalloprotease, FtsH family protein [Burkholderia
           thailandensis Bt4]
 gi|257142620|ref|ZP_05590882.1| ATP-dependent metalloprotease FtsH [Burkholderia thailandensis
           E264]
 gi|83650993|gb|ABC35057.1| ATP-dependent metalloprotease, FtsH family [Burkholderia
           thailandensis E264]
          Length = 662

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 8/72 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL VG PG GKT LA+ VA E GV F STSG    +   G  AA + +L ++       +
Sbjct: 206 VLIVGAPGTGKTLLAKAVAGEAGVPFFSTSGSSFVEMFVGVGAARVRDLFEQAQQKAPCI 265

Query: 109 LFIDEIHRLSII 120
           +FIDE+  L  +
Sbjct: 266 IFIDELDALGKV 277


>gi|66812244|ref|XP_640301.1| replication factor C subunit [Dictyostelium discoideum AX4]
 gi|74855117|sp|Q54ST4|RFC5_DICDI RecName: Full=Probable replication factor C subunit 5; AltName:
          Full=Activator 1 subunit 5
 gi|60468315|gb|EAL66323.1| replication factor C subunit [Dictyostelium discoideum AX4]
          Length = 347

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 6/61 (9%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81
          RP+ L++     +    +   I+        L H+LF GPPG GKT+  Q +AR+L G N
Sbjct: 31 RPKNLDDLIAHEDITQTITKLIDN-----NTLPHLLFYGPPGTGKTSTIQAIARKLYGDN 85

Query: 82 F 82
          +
Sbjct: 86 Y 86


>gi|328751836|gb|AEB39673.1| MIP17311p [Drosophila melanogaster]
          Length = 740

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 35/70 (50%), Gaps = 7/70 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78
           T E+  G  EA   LK  +E  K+  +  +        VL VGPPG GKT LA+ VA E 
Sbjct: 302 TFEDVKGCDEAKQELKEVVEFLKSPEKFSNLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361

Query: 79  GVNFRSTSGP 88
            V F   +GP
Sbjct: 362 KVPFFHAAGP 371


>gi|307327053|ref|ZP_07606243.1| ATP-dependent metalloprotease FtsH [Streptomyces violaceusniger Tu
           4113]
 gi|306887351|gb|EFN18347.1| ATP-dependent metalloprotease FtsH [Streptomyces violaceusniger Tu
           4113]
          Length = 680

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 4/58 (6%)

Query: 34  VEACSNLKVFI-EAAKARA---EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VE    +K F+ E AK +A   +    VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 182 VEELQEIKEFLQEPAKFQAVGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISG 239


>gi|300123151|emb|CBK24424.2| unnamed protein product [Blastocystis hominis]
          Length = 314

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 5/47 (10%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
          RP+ LE+  G  E    +KV  E        L H+L  GPPG GKTT
Sbjct: 10 RPQCLEDIVGNEETIKRMKVITETGN-----LPHILLAGPPGTGKTT 51


>gi|291562917|emb|CBL41733.1| AAA domain (dynein-related subfamily) [butyrate-producing bacterium
           SS3/4]
          Length = 514

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 49/106 (46%), Gaps = 34/106 (32%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTS-----------GPVIAK---AGD------- 95
           VL +GPPG+GKT + + VARE G+   S +            P I++   +G        
Sbjct: 36  VLLIGPPGIGKTQIMEQVARECGIGLVSYTITHHTRQSAIGLPFISEKTYSGKNVHVTEY 95

Query: 96  -----LAALLTNLED----RDVLFIDEIHRLSIIVEEILYPAMEDF 132
                +AA+   +ED      +LFIDEI+     V E L PAM  F
Sbjct: 96  TMSEIVAAIYNKIEDTGLSEGLLFIDEIN----CVSETLAPAMLQF 137


>gi|256750615|ref|ZP_05491501.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|256750455|gb|EEU63473.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter ethanolicus
           CCSD1]
          Length = 510

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 52/121 (42%), Gaps = 16/121 (13%)

Query: 10  RNVSQEDADISLLRPR-TLEEFTGQVEACSNLKVFIE-------AAKARAEALDHVLFVG 61
            N+++   D S  +   T ++  G  E    LKV I+         K  A+    +LF G
Sbjct: 65  NNITETKEDTSHRKTNITFKDVAGLDEVIDELKVIIDFMTNTEKYNKMGAKIPKGILFYG 124

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DVLFIDE 113
           PPG GKT LA  +A E    F S SG       V   A  + AL    +     ++FIDE
Sbjct: 125 PPGTGKTLLATALAGETNSTFISASGSEFVEKYVGVGASRIRALFAKAKKSAPSIIFIDE 184

Query: 114 I 114
           I
Sbjct: 185 I 185


>gi|213514520|ref|NP_001135046.1| replication factor C subunit 5 [Salmo salar]
 gi|209738250|gb|ACI69994.1| Replication factor C subunit 5 [Salmo salar]
          Length = 335

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 9/72 (12%)

Query: 7  LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
          L SRN+      +   RP+TL++     +  S ++ FI   +     L H+LF GPPG G
Sbjct: 9  LQSRNLPW----VEKYRPQTLDDLISHKDILSTIQKFISEDR-----LPHLLFYGPPGTG 59

Query: 67 KTTLAQVVAREL 78
          KT+     A++L
Sbjct: 60 KTSTVLASAKQL 71


>gi|168021024|ref|XP_001763042.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162685854|gb|EDQ72247.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 557

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 85/199 (42%), Gaps = 33/199 (16%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQ 72
           + + D++  + R   E  G  +    +  ++   K + +A   VL FVGPPG+GKT+LA 
Sbjct: 29  EHEVDLAAAKVRLDSEHYGLSKVKKRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLAS 88

Query: 73  VVARELGVNF-RSTSGPVIAKA----------GDLAALLTNLEDR-----DVLFIDEIHR 116
            +A  LG  F R + G V  +A          G +   L +   R      V+ +DEI +
Sbjct: 89  SIAGALGRRFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGIKRVGVNNPVMLLDEIDK 148

Query: 117 --------LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
                   L+  + E+L P       D  +       +V  ++S+   +A   R+  +  
Sbjct: 149 TGTDVRGDLASALLEVLDPEQNKTFNDHYL-------NVPFDVSKVVFLATANRMQSMPA 201

Query: 169 PLQDRFGIPIRLNFYEIED 187
           PL DR  I I L  Y  E+
Sbjct: 202 PLLDRMEI-IELPGYTCEE 219


>gi|222053541|ref|YP_002535903.1| ATP-dependent metalloprotease FtsH [Geobacter sp. FRC-32]
 gi|221562830|gb|ACM18802.1| ATP-dependent metalloprotease FtsH [Geobacter sp. FRC-32]
          Length = 586

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 21/34 (61%), Positives = 23/34 (67%)

Query: 54  LDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           L  +L VGPPG GKT LA+ VA E GV F S SG
Sbjct: 179 LTGILLVGPPGTGKTLLARAVAGEAGVPFFSMSG 212


>gi|47210930|emb|CAF92729.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 724

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 33/67 (49%), Gaps = 10/67 (14%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNF------RSTSGPVIAKAGDLAALLTNL----EDRD 107
           L  GPPGLGKTTLA ++A+  G N          S  V  K  D A  + ++    E  +
Sbjct: 108 LLSGPPGLGKTTLAHIIAKHAGYNVVEINASDDRSAEVFQKRIDTATQMKSVLGVNEKPN 167

Query: 108 VLFIDEI 114
            L IDEI
Sbjct: 168 CLIIDEI 174


>gi|332706533|ref|ZP_08426594.1| membrane protease FtsH catalytic subunit [Lyngbya majuscula 3L]
 gi|332354417|gb|EGJ33896.1| membrane protease FtsH catalytic subunit [Lyngbya majuscula 3L]
          Length = 660

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 243 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 273


>gi|326921318|ref|XP_003206908.1| PREDICTED: 26S protease regulatory subunit 10B-like [Meleagris
           gallopavo]
          Length = 372

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 56/124 (45%), Gaps = 23/124 (18%)

Query: 8   LSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV--------L 58
           L  N+S ED  D+S        E  G  E    L+  IE      E    V        L
Sbjct: 101 LVYNMSHEDPGDVSY------SEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCL 154

Query: 59  FVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA-GDLAALLTNLED--RD----VLF 110
             GPPG GKT LA+ VA +L  NF +  S  ++ K  G+ A L+  + +  RD    ++F
Sbjct: 155 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIF 214

Query: 111 IDEI 114
           +DEI
Sbjct: 215 MDEI 218


>gi|291298362|ref|YP_003509640.1| ATP-dependent metalloprotease FtsH [Stackebrandtia nassauensis DSM
           44728]
 gi|290567582|gb|ADD40547.1| ATP-dependent metalloprotease FtsH [Stackebrandtia nassauensis DSM
           44728]
          Length = 671

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 37/70 (52%), Gaps = 9/70 (12%)

Query: 26  TLEEFTGQVEACSNL---KVFIEAAKARAEAL-----DHVLFVGPPGLGKTTLAQVVARE 77
           T ++  G  EA   L   K F++   A+ +AL       VL  GPPG GKT LA+ VA E
Sbjct: 178 TFDDVAGANEAVEELQEIKDFLQNP-AKYQALGAKIPKGVLLFGPPGTGKTLLARAVAGE 236

Query: 78  LGVNFRSTSG 87
            GV F S SG
Sbjct: 237 AGVPFYSISG 246


>gi|282896488|ref|ZP_06304508.1| Peptidase M41, FtsH [Raphidiopsis brookii D9]
 gi|281198594|gb|EFA73475.1| Peptidase M41, FtsH [Raphidiopsis brookii D9]
          Length = 645

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 210 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 240


>gi|296089772|emb|CBI39591.3| unnamed protein product [Vitis vinifera]
          Length = 964

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 79/191 (41%), Gaps = 32/191 (16%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV-GPPGLGKTT 69
           N S E+ D+   +    E+  G  +    +  FI   K R  +   ++ + GPPG+GKT+
Sbjct: 416 NYSDENFDVMQAQQILDEDHYGLTDVKERILEFIAVGKLRGSSQGKIICLSGPPGVGKTS 475

Query: 70  LAQVVARELGVN-FRSTSGPVI--------------AKAGDLAALLTNLEDRDVL-FIDE 113
           + + +AR L    FR + G +               A  G +   L N+   + L  IDE
Sbjct: 476 IGRSIARALNRKFFRFSVGGLADVAEIKGHRRTYIGAMPGKMVQCLKNVGTANPLVLIDE 535

Query: 114 IHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
           I +L        +  + E+L P      LD  +        V I+LS+   +     V +
Sbjct: 536 IDKLGKGHAGDPASALLELLDPEQNANFLDHYL-------DVPIDLSKVLFVCTANIVEM 588

Query: 166 LTNPLQDRFGI 176
           + NPL DR  +
Sbjct: 589 IPNPLLDRMEV 599


>gi|225427356|ref|XP_002282657.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297742183|emb|CBI33970.3| unnamed protein product [Vitis vinifera]
          Length = 888

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 82/206 (39%), Gaps = 33/206 (16%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQ 72
           + + D+   + R   +  G V+    +  ++   K + +A   VL FVGPPG+GKT+LA 
Sbjct: 361 EHELDLRAAKERLDSDHYGLVKVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLAS 420

Query: 73  VVARELGVNFRSTSGPVIAKAGDL------------AALLTNLE----DRDVLFIDEIHR 116
            +A  LG  F   S   +    D+              L+  L+       V+ +DEI +
Sbjct: 421 SIASALGRKFVRISLGGVKDEADIRGHRRTYIGSMPGRLIEGLKRVGVSNPVMLLDEIDK 480

Query: 117 LSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
               V         E+L P       D  +       +V  +LS+   +A   RV  +  
Sbjct: 481 TGSDVRGDPASALLEVLDPEQNKTFNDHYL-------NVPYDLSKVIFVATANRVQPIPP 533

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQR 194
           PL DR  + I L  Y  E+   I  R
Sbjct: 534 PLLDRMEV-IELPGYTPEEKLKIAMR 558


>gi|222148265|ref|YP_002549222.1| ATP-dependent protease ATP-binding subunit ClpX [Agrobacterium
           vitis S4]
 gi|254763828|sp|B9JVD6|CLPX_AGRVS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|221735253|gb|ACM36216.1| ATP-dependent Clp protease ATP-binding subunit [Agrobacterium vitis
           S4]
          Length = 425

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L VGP G GKT LAQ +AR + V F       + +AG +   + N+         
Sbjct: 113 AKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQSAD 172

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDE+ ++S
Sbjct: 173 YNVERAQRGIVYIDEVDKIS 192


>gi|218780718|ref|YP_002432036.1| ATP-dependent protease La [Desulfatibacillum alkenivorans AK-01]
 gi|218762102|gb|ACL04568.1| ATP-dependent protease La [Desulfatibacillum alkenivorans AK-01]
          Length = 785

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 81/189 (42%), Gaps = 42/189 (22%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA----------GDLAA-LLTNL- 103
           + F GPPG GKT+L + +AR LG NF R + G V  +A          G L   ++ N+ 
Sbjct: 364 ICFAGPPGTGKTSLGRSIARALGRNFVRISLGGVRDEAEIRGHRRTYVGALPGRIIQNIR 423

Query: 104 ---EDRDVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152
               +  +  +DE+ +L        S  + E+L P   D   D  +        V  +LS
Sbjct: 424 RAESNNPIFMLDEVDKLGNDFRGDPSSALLEVLDPEQNDTFSDHYL-------DVPFDLS 476

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR----------GAKLTGLA 202
           +   IA    +  +   L+DR  + I L  Y +E+   I ++          G K + + 
Sbjct: 477 KVMFIATANILDTIPPALRDRMEV-IELLGYTMEEKVKIAKKYLIPRQRDAHGLKASDIK 535

Query: 203 VTDEAACEI 211
           +TD A  +I
Sbjct: 536 ITDGAIKQI 544


>gi|195585855|ref|XP_002082694.1| GD25099 [Drosophila simulans]
 gi|194194703|gb|EDX08279.1| GD25099 [Drosophila simulans]
          Length = 603

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 35/70 (50%), Gaps = 7/70 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78
           T E+  G  EA   LK  +E  K+  +  +        VL VGPPG GKT LA+ VA E 
Sbjct: 213 TFEDVKGCDEAKQELKEVVEFLKSPEKFSNLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 272

Query: 79  GVNFRSTSGP 88
            V F   +GP
Sbjct: 273 KVPFFHAAGP 282


>gi|195488933|ref|XP_002092523.1| GE11626 [Drosophila yakuba]
 gi|194178624|gb|EDW92235.1| GE11626 [Drosophila yakuba]
          Length = 735

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 35/70 (50%), Gaps = 7/70 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78
           T E+  G  EA   LK  +E  K+  +  +        VL VGPPG GKT LA+ VA E 
Sbjct: 297 TFEDVKGCDEAKQELKEVVEFLKSPEKFSNLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 356

Query: 79  GVNFRSTSGP 88
            V F   +GP
Sbjct: 357 KVPFFHAAGP 366


>gi|182437881|ref|YP_001825600.1| putative cell division protein FtsH [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326778517|ref|ZP_08237782.1| ATP-dependent metalloprotease FtsH [Streptomyces cf. griseus
           XylebKG-1]
 gi|178466397|dbj|BAG20917.1| putative cell division protein FtsH [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326658850|gb|EGE43696.1| ATP-dependent metalloprotease FtsH [Streptomyces cf. griseus
           XylebKG-1]
          Length = 688

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 4/58 (6%)

Query: 34  VEACSNLKVFI-EAAKARA---EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VE    +K F+ E AK +A   +    VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 182 VEELHEIKEFLQEPAKFQAVGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISG 239


>gi|169830305|ref|YP_001716287.1| ATP-dependent metalloprotease FtsH [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169637149|gb|ACA58655.1| ATP-dependent metalloprotease FtsH [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 620

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL  GPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 195 VLLFGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 254

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 255 VFIDEI 260


>gi|160888887|ref|ZP_02069890.1| hypothetical protein BACUNI_01307 [Bacteroides uniformis ATCC 8492]
 gi|156861786|gb|EDO55217.1| hypothetical protein BACUNI_01307 [Bacteroides uniformis ATCC 8492]
          Length = 746

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 6/73 (8%)

Query: 14  QEDADISL--LRPRTLEEFTGQVEACSNLKVFIEAAKA----RAEALDHVLFVGPPGLGK 67
           +ED  ++L  L  R      GQ EA   +   ++ +KA      + L  +LFVGP G+GK
Sbjct: 440 KEDDTVALESLHERISSRIYGQEEAVRQVVEAVQMSKAGLLDENKPLASLLFVGPTGVGK 499

Query: 68  TTLAQVVARELGV 80
           T +A+V+A ELG+
Sbjct: 500 TEVAKVLAAELGI 512


>gi|138893741|ref|YP_001124194.1| cell-division protein and general stress protein [Geobacillus
           thermodenitrificans NG80-2]
 gi|196250783|ref|ZP_03149470.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. G11MC16]
 gi|134265254|gb|ABO65449.1| Cell-division protein and general stress protein(class III
           heat-shock) [Geobacillus thermodenitrificans NG80-2]
 gi|196209733|gb|EDY04505.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. G11MC16]
          Length = 631

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISG 228


>gi|167039684|ref|YP_001662669.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter sp. X514]
 gi|300915067|ref|ZP_07132382.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter sp. X561]
 gi|307724990|ref|YP_003904741.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter sp. X513]
 gi|310943101|sp|B0K657|FTSH2_THEPX RecName: Full=ATP-dependent zinc metalloprotease FtsH 2
 gi|166853924|gb|ABY92333.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter sp. X514]
 gi|300888791|gb|EFK83938.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter sp. X561]
 gi|307582051|gb|ADN55450.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter sp. X513]
          Length = 510

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 52/121 (42%), Gaps = 16/121 (13%)

Query: 10  RNVSQEDADISLLRPR-TLEEFTGQVEACSNLKVFIE-------AAKARAEALDHVLFVG 61
            N+++   D S  +   T ++  G  E    LKV I+         K  A+    +LF G
Sbjct: 65  NNITETKEDTSHRKTNITFKDVAGLDEVIDELKVIIDFMTNTEKYNKMGAKIPKGILFYG 124

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DVLFIDE 113
           PPG GKT LA  +A E    F S SG       V   A  + AL    +     ++FIDE
Sbjct: 125 PPGTGKTLLATALAGETNSTFISASGSEFVEKYVGVGASRIRALFAKAKKSAPSIIFIDE 184

Query: 114 I 114
           I
Sbjct: 185 I 185


>gi|57529874|ref|NP_001006494.1| 26S protease regulatory subunit S10B [Gallus gallus]
 gi|53130584|emb|CAG31621.1| hypothetical protein RCJMB04_8n6 [Gallus gallus]
          Length = 389

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 56/124 (45%), Gaps = 23/124 (18%)

Query: 8   LSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV--------L 58
           L  N+S ED  D+S        E  G  E    L+  IE      E    V        L
Sbjct: 118 LVYNMSHEDPGDVSY------SEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCL 171

Query: 59  FVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA-GDLAALLTNLED--RD----VLF 110
             GPPG GKT LA+ VA +L  NF +  S  ++ K  G+ A L+  + +  RD    ++F
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIF 231

Query: 111 IDEI 114
           +DEI
Sbjct: 232 MDEI 235


>gi|81299807|ref|YP_400015.1| FtsH peptidase [Synechococcus elongatus PCC 7942]
 gi|81168688|gb|ABB57028.1| FtsH peptidase homologue, chloroplast. Metallo peptidase. MEROPS
           family M41 [Synechococcus elongatus PCC 7942]
          Length = 632

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 204 VLLVGPPGTGKTLLAKAIAGEAGVPFFSMSG 234


>gi|56750555|ref|YP_171256.1| ATP-dependent Zn protease [Synechococcus elongatus PCC 6301]
 gi|56685514|dbj|BAD78736.1| ATP-dependent Zn protease [Synechococcus elongatus PCC 6301]
          Length = 632

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 204 VLLVGPPGTGKTLLAKAIAGEAGVPFFSMSG 234


>gi|312880129|ref|ZP_07739929.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Aminomonas
           paucivorans DSM 12260]
 gi|310783420|gb|EFQ23818.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Aminomonas
           paucivorans DSM 12260]
          Length = 428

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           +VL VGP G GKT LAQ +A+ L V F       + +AG    D+  +L  L        
Sbjct: 122 NVLLVGPTGCGKTLLAQSLAKLLKVPFAIADATTLTEAGYVGEDVENILVRLLQAADYDP 181

Query: 104 --EDRDVLFIDEIHRLS 118
              +R +++IDEI ++S
Sbjct: 182 KTAERGIIYIDEIDKIS 198


>gi|307298980|ref|ZP_07578782.1| DNA polymerase III, subunits gamma and tau [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306915405|gb|EFN45790.1| DNA polymerase III, subunits gamma and tau [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 485

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 104/247 (42%), Gaps = 36/247 (14%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPR   E  GQ +    L   IE  K     L H  +F G  G GKTT A+++A+ L   
Sbjct: 10  RPRNFNELVGQDQVKEILGKAIEKNK-----LSHAYIFSGSRGTGKTTSARILAKMLNCL 64

Query: 82  FRSTSGPV----IAKAGDLAALLTNLEDRDVLF--IDEIHRLSIIVEEILYPAMEDF--- 132
              +  P       KA D ++ +  +E     +  IDEI ++   V     P M  F   
Sbjct: 65  SEGSEKPCGVCDSCKAIDSSSHMDVVELDAASYRGIDEIRKIRDAVS--YRPVMGKFKVY 122

Query: 133 ---QLDLMVGEGPSA--RSVKINLSRFTLIAATTRVGLLTNPLQDRFGI----PIRLNFY 183
              +  ++  E  +A  ++++    R   I ATT +  +   +  R  I    P+R    
Sbjct: 123 IIDEFHMLTREAFNALLKTLEEPPDRVVFILATTNLEKVPETILSRCQIFYFKPLRE--- 179

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
             ED+ T ++R A+   L   ++A   I+  + G  R A  L+ RV     ++++  +  
Sbjct: 180 --EDIVTYLERIARAEELQYDEKALRYISKAAHGGMRDAVNLMERV-----ISYSGNVKE 232

Query: 244 EIADAAL 250
           E A  AL
Sbjct: 233 EAARTAL 239


>gi|302327390|gb|ADL26591.1| cell division protein FtsH [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 676

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 92/209 (44%), Gaps = 36/209 (17%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VL 109
           L VGPPG GKT LA+ VA E GV F S SG    +   G  A+ + +L +        +L
Sbjct: 207 LLVGPPGTGKTLLARAVAGEAGVPFFSMSGSDFVEMFVGVGASRVRDLFETGKKNAPCIL 266

Query: 110 FIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN-----LSRFT------LIA 158
           FIDEI  +               Q    +G G   R   +N     +  FT      LIA
Sbjct: 267 FIDEIDAVG-------------RQRGAGLGGGHDEREQTLNQLLVEMDGFTANEGVILIA 313

Query: 159 ATTRVGLLTNPL--QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSR 216
           AT R  +L   L    RF   I +   +++  + I++   K   + + D+   ++   ++
Sbjct: 314 ATNRPDVLDKALLRPGRFDRQIVVGLPDLKGREEILKVHLKKRKVPLGDD--VDVKAVAK 371

Query: 217 GTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           GTP +AG  L  + + A +  A+   +++
Sbjct: 372 GTPGLAGADLENLVNEAALLAARFNNKKV 400


>gi|284173019|ref|YP_003406400.1| ATPase AAA [Haloterrigena turkmenica DSM 5511]
 gi|284017779|gb|ADB63727.1| AAA ATPase central domain protein [Haloterrigena turkmenica DSM
           5511]
          Length = 317

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 35/75 (46%), Gaps = 20/75 (26%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------------ 104
           +LF GPPG GKT  A+ +A ELG  +   S      AGD+ +   N              
Sbjct: 112 ILFYGPPGTGKTLFARAIAGELGHPYLELS------AGDIKSRWVNESTEQVNQLFAEAA 165

Query: 105 --DRDVLFIDEIHRL 117
             DR V+FIDEI  L
Sbjct: 166 QFDRCVIFIDEIDAL 180


>gi|261417160|ref|YP_003250843.1| ATP-dependent metalloprotease FtsH [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261373616|gb|ACX76361.1| ATP-dependent metalloprotease FtsH [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 696

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 92/209 (44%), Gaps = 36/209 (17%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VL 109
           L VGPPG GKT LA+ VA E GV F S SG    +   G  A+ + +L +        +L
Sbjct: 227 LLVGPPGTGKTLLARAVAGEAGVPFFSMSGSDFVEMFVGVGASRVRDLFETGKKNAPCIL 286

Query: 110 FIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN-----LSRFT------LIA 158
           FIDEI  +               Q    +G G   R   +N     +  FT      LIA
Sbjct: 287 FIDEIDAVG-------------RQRGAGLGGGHDEREQTLNQLLVEMDGFTANEGVILIA 333

Query: 159 ATTRVGLLTNPL--QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSR 216
           AT R  +L   L    RF   I +   +++  + I++   K   + + D+   ++   ++
Sbjct: 334 ATNRPDVLDKALLRPGRFDRQIVVGLPDLKGREEILKVHLKKRKVPLGDD--VDVKAVAK 391

Query: 217 GTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           GTP +AG  L  + + A +  A+   +++
Sbjct: 392 GTPGLAGADLENLVNEAALLAARFNNKKV 420


>gi|282933688|ref|ZP_06339046.1| cell division protease FtsH [Lactobacillus jensenii 208-1]
 gi|297205112|ref|ZP_06922508.1| cell division protein FtsH [Lactobacillus jensenii JV-V16]
 gi|281302178|gb|EFA94422.1| cell division protease FtsH [Lactobacillus jensenii 208-1]
 gi|297149690|gb|EFH29987.1| cell division protein FtsH [Lactobacillus jensenii JV-V16]
          Length = 711

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108
           VL  GPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 229 VLLEGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFENAKKTSPSI 288

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 289 IFIDEI 294


>gi|222623647|gb|EEE57779.1| hypothetical protein OsJ_08323 [Oryza sativa Japonica Group]
          Length = 612

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 9/67 (13%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA---------GDLAALLTNLEDRD 107
           VLF GPPG GKT+ A+V+A++ GV        +I            G + +L  +L D  
Sbjct: 383 VLFEGPPGTGKTSSARVIAKQAGVPLLYVPLEIIMSKYYGESERLLGSVFSLANDLPDGG 442

Query: 108 VLFIDEI 114
           ++F+DE+
Sbjct: 443 IIFLDEV 449


>gi|241587680|ref|XP_002403757.1| conserved hypothetical protein [Ixodes scapularis]
 gi|215502246|gb|EEC11740.1| conserved hypothetical protein [Ixodes scapularis]
          Length = 458

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 29/52 (55%)

Query: 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
            GQ +A     + IE  +++  A   VLF GPPG GKT +A  +A+ELG  
Sbjct: 41 LVGQEQAREAAGIIIELIRSKKMAGRAVLFAGPPGTGKTAIALAIAQELGTK 92


>gi|169350636|ref|ZP_02867574.1| hypothetical protein CLOSPI_01408 [Clostridium spiroforme DSM 1552]
 gi|169292690|gb|EDS74823.1| hypothetical protein CLOSPI_01408 [Clostridium spiroforme DSM 1552]
          Length = 420

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 7/115 (6%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           S +RP+ L +  GQ        +  +  + +      ++  G PG GKTT+A  +A +L 
Sbjct: 7   SRMRPKNLCDVIGQQHLVGENSILTKIVEKKHPF--SIILYGNPGCGKTTIANALANDLN 64

Query: 80  VN---FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
           +    F +++G    K  D+      L +   + IDEIHRL+   ++ L   ME+
Sbjct: 65  IPCRFFNASTGN--KKEMDIIIEEAKLCNGLFIIIDEIHRLNKARQDDLLSYMEN 117


>gi|49475381|ref|YP_033422.1| ATP-dependent protease ATP-binding subunit [Bartonella henselae
           str. Houston-1]
 gi|61211490|sp|Q6G3Z2|CLPX_BARHE RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|49238187|emb|CAF27397.1| ATP-dependent clp protease ATP-binding subunit clpX [Bartonella
           henselae str. Houston-1]
          Length = 424

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L VGP G GKT LAQ +AR + V F       + +AG +   + N+         
Sbjct: 112 AKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 171

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDE+ ++S
Sbjct: 172 YNVERAQRGIVYIDEVDKIS 191


>gi|115448583|ref|NP_001048071.1| Os02g0740300 [Oryza sativa Japonica Group]
 gi|46390305|dbj|BAD15754.1| putative AAA family ATPase [Oryza sativa Japonica Group]
 gi|113537602|dbj|BAF09985.1| Os02g0740300 [Oryza sativa Japonica Group]
 gi|215695439|dbj|BAG90630.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 611

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 9/67 (13%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA---------GDLAALLTNLEDRD 107
           VLF GPPG GKT+ A+V+A++ GV        +I            G + +L  +L D  
Sbjct: 382 VLFEGPPGTGKTSSARVIAKQAGVPLLYVPLEIIMSKYYGESERLLGSVFSLANDLPDGG 441

Query: 108 VLFIDEI 114
           ++F+DE+
Sbjct: 442 IIFLDEV 448


>gi|321458433|gb|EFX69502.1| hypothetical protein DAPPUDRAFT_202808 [Daphnia pulex]
          Length = 330

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+ L++     +  S ++ FI   +     L H+LF GPPG GKT+     A+EL
Sbjct: 14 RPKQLDDLISHQDIISTIRKFINENR-----LPHLLFYGPPGTGKTSTILACAKEL 64


>gi|315274601|ref|ZP_07869471.1| putative cell division protease [Listeria marthii FSL S4-120]
 gi|313615771|gb|EFR89029.1| putative cell division protease [Listeria marthii FSL S4-120]
          Length = 270

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 216 VLLVGPPGTGKTLLARAVAGEAGVPFFSISG 246


>gi|313241103|emb|CBY33401.1| unnamed protein product [Oikopleura dioica]
          Length = 793

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 65/157 (41%), Gaps = 32/157 (20%)

Query: 43  FIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS--------------- 86
           FI  ++ R      +L F GPPG GKT++A+ +AR LG  +   S               
Sbjct: 355 FICTSQLRGSVQGKILCFHGPPGTGKTSIAKSIARSLGRKYYRFSVGGMSDVAEIKGHRR 414

Query: 87  GPVIAKAGDLAALLTNLEDRD-VLFIDEIHRL--------SIIVEEILYPAMEDFQLDLM 137
             V A  G L   L   +  + ++ IDEI +L        S  + E+L P      LD  
Sbjct: 415 TYVGAMPGKLVQCLKKTQSENPLILIDEIDKLGRGYQGDPSSALLELLDPEQNVGFLDHY 474

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRF 174
           +        V I+LS+   I     +  ++ PL+DR 
Sbjct: 475 L-------DVPIDLSKALFICTANDLSTISGPLRDRM 504


>gi|309791814|ref|ZP_07686301.1| AAA family ATPase, CDC48 subfamily protein [Oscillochloris
           trichoides DG6]
 gi|308226136|gb|EFO79877.1| AAA family ATPase, CDC48 subfamily protein [Oscillochloris
           trichoides DG6]
          Length = 710

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 16/95 (16%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLED 105
           +A   VL  GPPG GKT +A+ VA E   +F + +GP I      A   +L  +      
Sbjct: 215 DAPKGVLLYGPPGSGKTLIARAVANETSAHFVTINGPEIIDKLYGASEANLRGIFDEARK 274

Query: 106 R--DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138
           R   ++FIDEI        + + P  ED   D  V
Sbjct: 275 RAPAIIFIDEI--------DAIAPKREDLSGDRQV 301



 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ +ARE   NF S  GP
Sbjct: 495 VLLYGPPGTGKTLLAKALARESEANFISVKGP 526


>gi|302559295|ref|ZP_07311637.1| cell division protein [Streptomyces griseoflavus Tu4000]
 gi|302476913|gb|EFL40006.1| cell division protein [Streptomyces griseoflavus Tu4000]
          Length = 668

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 4/58 (6%)

Query: 34  VEACSNLKVFI-EAAKARA---EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VE    +K F+ E AK +A   +    VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 169 VEELHEIKEFLQEPAKFQAVGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISG 226


>gi|302846122|ref|XP_002954598.1| hypothetical protein VOLCADRAFT_82864 [Volvox carteri f.
           nagariensis]
 gi|300260017|gb|EFJ44239.1| hypothetical protein VOLCADRAFT_82864 [Volvox carteri f.
           nagariensis]
          Length = 271

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-----RSTSGPVIAKAGDLAALLTNLEDR---DV 108
           VL  GPPG GKT LA+ VA E G NF      S +     +A      +  L  +    V
Sbjct: 22  VLLFGPPGTGKTMLAKAVASECGANFLYVSLSSVTSKWFGEAEKYIKAVFTLAHKIAPSV 81

Query: 109 LFIDEIHRL 117
           +F+DE+  L
Sbjct: 82  IFVDEVDSL 90


>gi|289676665|ref|ZP_06497555.1| peptidase S16, ATP-dependent protease La [Pseudomonas syringae pv.
           syringae FF5]
          Length = 513

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 70/166 (42%), Gaps = 40/166 (24%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAKAGDLAALLT 101
           VL VGPPG+GKT++ + +A  LG  F   S                 + A+ G L   L 
Sbjct: 95  VLLVGPPGVGKTSVGRSIAESLGRPFYRLSVGGMRDEAEIKGHRRTYIGAQPGKLVQALK 154

Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAME----DFQLDLMVGEGPSARSVK 148
           ++E  + V+ +DEI ++    +        E L P       D  LDL           +
Sbjct: 155 DVEVMNPVIMLDEIDKMGQSYQGDPASALLETLDPEQNVEFLDHYLDL-----------R 203

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           ++LS+   +     +  +  PL DR  + IRL+ Y  E+   I +R
Sbjct: 204 LDLSKVLFVCTANTLDSIPGPLLDRMEV-IRLSGYITEEKLAIAKR 248


>gi|288926550|ref|ZP_06420468.1| cell division cycle protein [Prevotella buccae D17]
 gi|288336692|gb|EFC75060.1| cell division cycle protein [Prevotella buccae D17]
          Length = 594

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRS------TSGPVIAKAGDLAALLTNLEDR--DV 108
           +L  GPPG GKT  A+  A E+G NF         S  V A   ++A +    E+    V
Sbjct: 357 MLLYGPPGCGKTFFAKHFAEEVGFNFMCITPATLKSRYVNATQENIAKMFKEAEENAPTV 416

Query: 109 LFIDEIHRL 117
           +FIDE++ L
Sbjct: 417 IFIDEMNEL 425


>gi|255939672|ref|XP_002560605.1| Pc16g02330 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211585228|emb|CAP92903.1| Pc16g02330 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 727

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 33/72 (45%), Gaps = 3/72 (4%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           ADI  L     E  T  VE   N  ++   A     A   VL  GPPG GKT LA+ VA 
Sbjct: 467 ADIGALGGIRDELVTAIVEPIKNPDIY---ANVGITAPTGVLLWGPPGCGKTLLAKAVAN 523

Query: 77  ELGVNFRSTSGP 88
           E   NF S  GP
Sbjct: 524 ESRANFISVKGP 535



 Score = 39.3 bits (90), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDL-AALLTNLEDRD-----V 108
           VL  GPPG GKT +A   A ELGV F S S P +    +G+   AL    E+       +
Sbjct: 198 VLLHGPPGCGKTLIANAFAAELGVPFISISAPSVVSGMSGESEKALREYFEEAKRLAPCL 257

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 258 IFIDEIDAIT 267


>gi|167770587|ref|ZP_02442640.1| hypothetical protein ANACOL_01933 [Anaerotruncus colihominis DSM
           17241]
 gi|167667182|gb|EDS11312.1| hypothetical protein ANACOL_01933 [Anaerotruncus colihominis DSM
           17241]
          Length = 603

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E  V F S SG    +      A  +  L    +++   +
Sbjct: 201 VLLVGPPGTGKTMLAKAVAGEASVPFFSMSGSEFVEMFVGMGASKVRDLFKQAKEKAPCI 260

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 261 VFIDEI 266


>gi|154253669|ref|YP_001414493.1| ATP-dependent protease ATP-binding subunit ClpX [Parvibaculum
           lavamentivorans DS-1]
 gi|171769684|sp|A7HY53|CLPX_PARL1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|154157619|gb|ABS64836.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Parvibaculum
           lavamentivorans DS-1]
          Length = 421

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+         
Sbjct: 110 AKSNILLIGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSAD 169

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDE+ ++S
Sbjct: 170 YNVERAQRGIVYIDEVDKIS 189


>gi|75908451|ref|YP_322747.1| FtsH-2 peptidase [Anabaena variabilis ATCC 29413]
 gi|75702176|gb|ABA21852.1| membrane protease FtsH catalytic subunit [Anabaena variabilis ATCC
           29413]
          Length = 645

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 210 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 240


>gi|322375632|ref|ZP_08050144.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           sp. C300]
 gi|321279340|gb|EFX56381.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           sp. C300]
          Length = 410

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +AR L V F       + +AG    D+  +L  L        
Sbjct: 114 NILMIGPTGSGKTFLAQTLARSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNI 173

Query: 104 --EDRDVLFIDEIHRLS 118
              +R ++++DEI +++
Sbjct: 174 ERAERGIIYVDEIDKIA 190


>gi|298507219|gb|ADI85942.1| ATP-dependent Lon protease (La) [Geobacter sulfurreducens KN400]
          Length = 819

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 77/177 (43%), Gaps = 33/177 (18%)

Query: 43  FIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA------- 93
           F+   K R +    +L FVGPPG+GKT+L + +AR LG  F R + G V  +A       
Sbjct: 345 FLAVRKLRKKMKGPILCFVGPPGVGKTSLGKSIARALGRKFVRISLGGVRDEAEIRGHRR 404

Query: 94  ---GDLAA-LLTNLE----DRDVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLM 137
              G L   ++  L+    +  V  +DE+ +L        S  + E+L P       D  
Sbjct: 405 TYVGALPGRIIQGLKQAGSNNPVFMLDELDKLGADFRGDPSSALLEVLDPEQNHMFSDHY 464

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           +       ++  NLS    IA   +   +  PL DR  + I L+ Y  E+   I +R
Sbjct: 465 I-------NLPFNLSNVMFIATANQYDTIPGPLLDRMEM-INLSGYTEEEKLEIAKR 513


>gi|317050718|ref|YP_004111834.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Desulfurispirillum indicum S5]
 gi|316945802|gb|ADU65278.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Desulfurispirillum indicum S5]
          Length = 429

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+            
Sbjct: 125 NILLIGPTGSGKTLLAQTLARVLNVPFAIADATTLTEAGYVGEDVENILLKLLQSCDFDV 184

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 185 ERAQRGIIYIDEIDKIS 201


>gi|301099514|ref|XP_002898848.1| lon protease, putative [Phytophthora infestans T30-4]
 gi|262104554|gb|EEY62606.1| lon protease, putative [Phytophthora infestans T30-4]
          Length = 807

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 46/197 (23%), Positives = 85/197 (43%), Gaps = 33/197 (16%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLA 71
           ++E+ D++  +    E+  G  +    +  FI  +K + +    ++ FVGPPG+GKT++ 
Sbjct: 416 TEENFDLAKAKQILDEDHYGLKDIKERILEFIAVSKLKGDVQGKIICFVGPPGVGKTSIG 475

Query: 72  QVVARELGVNFRSTS---------------GPVIAKAGDLAALLTNLEDRD-VLFIDEIH 115
           + +AR L   F   S                 V A  G +   L + +  + ++ IDEI 
Sbjct: 476 KSIARSLNREFYRFSVGGLSDVAEIKGHRRTYVGAMPGKIIQCLKSTQSSNPLILIDEID 535

Query: 116 RL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           +L        +  + E+L P+     +D  +        V ++LSR   I        + 
Sbjct: 536 KLGRGYQGDPASALLELLDPSQNSGFVDHYM-------DVPVDLSRVLFICTANVTDTIP 588

Query: 168 NPLQDRFGIPIRLNFYE 184
            PL DR  + +RL+ Y+
Sbjct: 589 GPLLDRMEV-LRLSGYD 604


>gi|256852016|ref|ZP_05557403.1| cell division protein [Lactobacillus jensenii 27-2-CHN]
 gi|260661415|ref|ZP_05862328.1| cell division protein [Lactobacillus jensenii 115-3-CHN]
 gi|256615428|gb|EEU20618.1| cell division protein [Lactobacillus jensenii 27-2-CHN]
 gi|260547870|gb|EEX23847.1| cell division protein [Lactobacillus jensenii 115-3-CHN]
          Length = 715

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108
           VL  GPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 233 VLLEGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFENAKKTSPSI 292

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 293 IFIDEI 298


>gi|297543594|ref|YP_003675896.1| DNA polymerase III subunits gamma and tau [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
 gi|296841369|gb|ADH59885.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
          Length = 516

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 64/263 (24%), Positives = 109/263 (41%), Gaps = 40/263 (15%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH-VLFVGPPGLGKTTLAQVVARELGVN 81
           RP++ +E  GQ      LK      + +   + H  LF G  G GKT++A++ A+   VN
Sbjct: 10  RPKSFKEVVGQEHIVKTLK-----NQIKLNRIGHAYLFTGTRGTGKTSIAKIFAK--AVN 62

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI-----IVEEILY-PAMEDFQLD 135
             + +      + D+   + N    DVL ID     S+     + E ++Y P+   +++ 
Sbjct: 63  CLNNTEGEPCNSCDICHAINNNTTMDVLEIDAASNNSVNDVRELRESVIYAPSQTKYKVY 122

Query: 136 L-----MVGEGPSA---RSVKINLSRFTLIAATTRVGLLTNPLQDRFG------IPIRLN 181
           +     M+  G      ++++   S    I ATT    L + +  R        IP RL 
Sbjct: 123 IIDEVHMLSTGAFNALLKTLEEPPSHVIFILATTEPDKLPDTILSRCQRFDFKRIPTRL- 181

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
                 +   + R    +G+ + D+    IA+   G+ R A  LL +   + E      I
Sbjct: 182 ------IAQNLDRICNDSGIKIEDKGLKTIALYGNGSMRDAISLLEQCISYKE----GFI 231

Query: 242 TREIADAALLRLAIDKMGFDQLD 264
           T E     +L +A D+M F  LD
Sbjct: 232 TYEDV-CEMLGVANDEMLFSLLD 253


>gi|257051274|ref|YP_003129107.1| AAA family ATPase, CDC48 subfamily [Halorhabdus utahensis DSM
           12940]
 gi|256690037|gb|ACV10374.1| AAA family ATPase, CDC48 subfamily [Halorhabdus utahensis DSM
           12940]
          Length = 754

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 20/37 (54%), Positives = 22/37 (59%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           E+   VL  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 496 ESAKGVLLYGPPGTGKTLLAKAVANEAQSNFISVKGP 532



 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DV 108
           VL  GPPG GKT +A+ VA E+   F + SGP I     G+    L  + D        +
Sbjct: 228 VLLHGPPGTGKTLMAKAVANEIDAYFTTISGPEIMSKYYGESEEQLREMFDEAEENAPAI 287

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 288 VFIDEIDSIA 297


>gi|168034706|ref|XP_001769853.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162678962|gb|EDQ65415.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 635

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 209 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 239


>gi|121601766|ref|YP_988861.1| ATP-dependent protease ATP-binding subunit [Bartonella
           bacilliformis KC583]
 gi|166214756|sp|A1USA8|CLPX_BARBK RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|120613943|gb|ABM44544.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bartonella
           bacilliformis KC583]
          Length = 424

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L VGP G GKT LAQ +AR + V F       + +AG +   + N+         
Sbjct: 112 AKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQSAD 171

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDE+ ++S
Sbjct: 172 YNVERAQRGIVYIDEVDKIS 191


>gi|28209884|ref|NP_780828.1| ATP-dependent protease LA [Clostridium tetani E88]
 gi|28202319|gb|AAO34765.1| ATP-dependent protease LA [Clostridium tetani E88]
          Length = 628

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 74/199 (37%), Gaps = 54/199 (27%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE-- 77
           SLLRP    E  GQ  A  +L      +K  +    H++  GPPG+GKTT A++   E  
Sbjct: 160 SLLRPEEFPEIVGQEIAIKSL-----LSKVASPYPQHIILYGPPGVGKTTAARLALEEGK 214

Query: 78  --------------------LGVNFRSTSGPVIAKAG---------DLAAL--------L 100
                               L  + R  + P++             DLA +        L
Sbjct: 215 RLNNTPFEEDAKFIEVDGTTLRWDPREITNPLLGSVHDPIYQGSKRDLAEVGIPEPKPGL 274

Query: 101 TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG-EGPSARSVKINL-------- 151
                  VLFIDEI  L  I++  L   +ED +++       P   ++   +        
Sbjct: 275 VTEAHGGVLFIDEIGELDYILQNKLLKVLEDKRVEFSSSYYDPDDENIPKYIKYLFDKGA 334

Query: 152 -SRFTLIAATTRVGLLTNP 169
            + F LI ATTR     NP
Sbjct: 335 PADFILIGATTREPSEINP 353


>gi|47221499|emb|CAG08161.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 335

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+ L++     +  S ++ FI   K     L H+LF GPPG GKT+     AR+L
Sbjct: 21 RPQKLDDLISHKDILSTIQRFISEDK-----LPHLLFYGPPGTGKTSTILACARQL 71


>gi|319407113|emb|CBI80750.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bartonella
           sp. 1-1C]
          Length = 424

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L VGP G GKT LAQ +AR + V F       + +AG +   + N+         
Sbjct: 112 AKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQSAD 171

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDE+ ++S
Sbjct: 172 YNVERAQRGIVYIDEVDKIS 191


>gi|310816209|ref|YP_003964173.1| ATP-dependent protease ATP-binding subunit [Ketogulonicigenium
           vulgare Y25]
 gi|308754944|gb|ADO42873.1| ATP-dependent protease ATP-binding subunit [Ketogulonicigenium
           vulgare Y25]
          Length = 422

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 51/112 (45%), Gaps = 25/112 (22%)

Query: 32  GQVEACSNLKVFIE--------AAKARAE---ALDHVLFVGPPGLGKTTLAQVVARELGV 80
           GQV A   L V +         AAK+  E   A  ++L +GP G GKT LAQ +AR L V
Sbjct: 79  GQVHAKRVLSVAVHNHYKRLNHAAKSNNEIELAKSNILLIGPTGSGKTLLAQTLARILDV 138

Query: 81  NFRSTSGPVIAKAGDLAALLTNL--------------EDRDVLFIDEIHRLS 118
            F       + +AG +   + N+                R +++IDE+ +++
Sbjct: 139 PFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQRGIVYIDEVDKIT 190


>gi|295106550|emb|CBL04093.1| membrane protease FtsH catalytic subunit [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 781

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
            L VGPPG GKT LA+ VA E GV F S SG       V   A  +  L    +D    +
Sbjct: 256 CLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFQQAKDASPAI 315

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 316 IFIDEI 321


>gi|284928911|ref|YP_003421433.1| membrane protease FtsH catalytic subunit [cyanobacterium UCYN-A]
 gi|284809370|gb|ADB95075.1| membrane protease FtsH catalytic subunit [cyanobacterium UCYN-A]
          Length = 586

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 172 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 202


>gi|282866362|ref|ZP_06275407.1| ATP-dependent metalloprotease FtsH [Streptomyces sp. ACTE]
 gi|282558758|gb|EFB64315.1| ATP-dependent metalloprotease FtsH [Streptomyces sp. ACTE]
          Length = 685

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 4/58 (6%)

Query: 34  VEACSNLKVFI-EAAKARA---EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VE    +K F+ E AK +A   +    VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 182 VEELHEIKEFLQEPAKFQAVGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISG 239


>gi|237708013|ref|ZP_04538494.1| ATP-dependent protease ATP-binding subunit [Bacteroides sp.
           9_1_42FAA]
 gi|265754200|ref|ZP_06089389.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides
           sp. 3_1_33FAA]
 gi|229457999|gb|EEO63720.1| ATP-dependent protease ATP-binding subunit [Bacteroides sp.
           9_1_42FAA]
 gi|263234909|gb|EEZ20464.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides
           sp. 3_1_33FAA]
          Length = 416

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 61/127 (48%), Gaps = 29/127 (22%)

Query: 21  LLRPRTLEEF-----TGQVEACSNLKVFIEAAKARA-EALD---------HVLFVGPPGL 65
           L +P+ ++EF      GQ +A   L V +     R  + +D         +++ VG  G 
Sbjct: 66  LPKPKEIKEFLDQYIIGQDDAKRYLSVAVYNHYKRLLQKVDKDDIEIEKSNIIMVGSTGT 125

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL----------EDRDVLFI 111
           GKT LA+ +A+ L V F      V+ +AG    D+ +LLT L           +R ++FI
Sbjct: 126 GKTLLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESLLTRLLQVADYNVAEAERGIVFI 185

Query: 112 DEIHRLS 118
           DEI +++
Sbjct: 186 DEIDKIA 192


>gi|257387828|ref|YP_003177601.1| ATPase AAA [Halomicrobium mukohataei DSM 12286]
 gi|257170135|gb|ACV47894.1| AAA family ATPase, CDC48 subfamily [Halomicrobium mukohataei DSM
           12286]
          Length = 740

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 8/76 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNL------EDRDV 108
           VL  GPPG GKT LA+ VA E   +F S +GP +I+K  G+    L  +      E   +
Sbjct: 226 VLLHGPPGTGKTLLAKAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDASEEAPSI 285

Query: 109 LFIDEIHRLSIIVEEI 124
           +FIDE+  ++   E++
Sbjct: 286 IFIDELDSIAPKREDV 301



 Score = 40.0 bits (92), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT +A+ VA E   NF S  GP
Sbjct: 499 VLLYGPPGTGKTLMAKAVANETDANFISVRGP 530


>gi|224369353|ref|YP_002603517.1| Lon3 [Desulfobacterium autotrophicum HRM2]
 gi|223692070|gb|ACN15353.1| Lon3 [Desulfobacterium autotrophicum HRM2]
          Length = 802

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 88/211 (41%), Gaps = 45/211 (21%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVN-FRSTSGPVIAKA--------------GDLAALLT 101
           +L VGPPG+GKT++ + +A  LG   FR + G +  +A              G L   L 
Sbjct: 384 LLLVGPPGVGKTSIGKSIADALGRKFFRFSLGGMKDEAEIKGHRRTYIGALPGKLVHALK 443

Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLS 152
           N +  + V+ +DE+ ++ +  +        E+L P   +  LD  +        + ++LS
Sbjct: 444 NAKTSNPVIMLDEVDKIGMSYQGDPASALLEVLDPEQNENFLDHYL-------DLTLDLS 496

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR----------GAKLTGLA 202
           +   I    +   +  PL DR    IRL+ Y  ++   I +           G K   L 
Sbjct: 497 KVLFICTANQPDTIPGPLLDRMD-AIRLSGYISKEKVDIAKHHLWPRLLKRSGLKSKQLK 555

Query: 203 VTDEAACEIA---MRSRGTPRIAGRLLRRVR 230
           ++D A  EIA    R  G   +   L R VR
Sbjct: 556 ISDAAIREIAEGYAREAGVRNLEKHLARIVR 586


>gi|218191547|gb|EEC73974.1| hypothetical protein OsI_08877 [Oryza sativa Indica Group]
          Length = 612

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 9/67 (13%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA---------GDLAALLTNLEDRD 107
           VLF GPPG GKT+ A+V+A++ GV        +I            G + +L  +L D  
Sbjct: 383 VLFEGPPGTGKTSSARVIAKQAGVPLLYVPLEIIMSKYYGESERLLGSVFSLANDLPDGG 442

Query: 108 VLFIDEI 114
           ++F+DE+
Sbjct: 443 IIFLDEV 449


>gi|223934595|ref|ZP_03626515.1| AAA ATPase central domain protein [bacterium Ellin514]
 gi|223896550|gb|EEF62991.1| AAA ATPase central domain protein [bacterium Ellin514]
          Length = 447

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 101/235 (42%), Gaps = 53/235 (22%)

Query: 56  HVLFVGPPGLGKTTLAQVVA---RELGVNFRSTSGPVIA--KAGDLAALLTNLEDR---- 106
           H +F G PG GKT++A+++A   RE G     + G ++   +AG + +++   E +    
Sbjct: 207 HQIFHGNPGTGKTSVARILARIYREFGF---LSKGELVETDRAGLVGSVIGATEAKTEEI 263

Query: 107 ------DVLFIDEIHRLSIIVEE--------ILYPAMEDFQLDLMVGEGPSARSVKINLS 152
                  VLFIDE + L+   ++         L  AMED + +L+V         +  + 
Sbjct: 264 IRKSRGSVLFIDEAYSLATDSQQDFGQRAIDTLVKAMEDMRGNLVV----IVAGYRKEME 319

Query: 153 RFTLIAATTRVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEI 211
           RF          L  NP L  RF   +    Y  E+L  I +R A      + DEAA  +
Sbjct: 320 RF----------LGANPGLASRFNRNLDFPDYSNEELVEIFRRFAAERRFVMEDEAATRV 369

Query: 212 AMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLR 266
                    I+  + RR R      +A+ + R + + +L+R A  +  +DQ   R
Sbjct: 370 ---------ISALVERRQRLEERFGNARDV-RTLWEISLMRQA--ERIYDQWKAR 412


>gi|149371395|ref|ZP_01890881.1| DNA polymerase III subunit gamma/tau [unidentified eubacterium
           SCB49]
 gi|149355533|gb|EDM44092.1| DNA polymerase III subunit gamma/tau [unidentified eubacterium
           SCB49]
          Length = 361

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 98/242 (40%), Gaps = 49/242 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV-- 80
           RP T ++  GQ    S L+  I+     A+AL   LF GP G+GKT+ A+++A+++    
Sbjct: 12  RPTTFKQVVGQQAITSTLENAIDNNHL-AQAL---LFTGPRGVGKTSCARILAKKINSDG 67

Query: 81  ------NFRSTSGPVIAKAGDLAALLTNLEDR----------DVLFIDEIHRLSIIVEEI 124
                 +F      + A + +    + NL D+           V  IDE+H LS      
Sbjct: 68  TEKEDEDFAFNIFELDAASNNSVDDIRNLTDQVRIPPQTGKYKVYIIDEVHMLSSAA--- 124

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
                  F   L   E P   ++         I ATT    +   +  R  I    +F  
Sbjct: 125 -------FNAFLKTLEEPPKHAI--------FILATTEKHKIIPTILSRCQI---FDFRR 166

Query: 185 I--EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           I  +D+K  ++  A    +   D+A   IA ++ G  R A  +  RV  F+     K +T
Sbjct: 167 ITVQDIKGHLKDVANAENVNAEDDALHIIAQKADGALRDALSIFDRVVSFS----GKNLT 222

Query: 243 RE 244
           RE
Sbjct: 223 RE 224


>gi|332527227|ref|ZP_08403297.1| putative MoxR like protein [Rubrivivax benzoatilyticus JA2]
 gi|332111649|gb|EGJ11630.1| putative MoxR like protein [Rubrivivax benzoatilyticus JA2]
          Length = 312

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 54/124 (43%), Gaps = 16/124 (12%)

Query: 29  EFTGQVEACSNLKVF----IEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRS 84
           + +G V+  S + V     IE + A   A  H+L    PG+GKTTLA  +A  LG++F  
Sbjct: 12  QISGLVDQISTIIVGKRPQIEDSVACLLAGGHLLIEDVPGVGKTTLAHALAGSLGLSFSR 71

Query: 85  TSGPVIAKAGDLAALLTNLEDRD------------VLFIDEIHRLSIIVEEILYPAMEDF 132
           T         DL  +      RD            VL  DEI+R     +  L  AME+ 
Sbjct: 72  TQFTADLMPSDLVGVSVFDRQRDAFVFHPGPVFAQVLLADEINRAGPKTQSALLEAMEEH 131

Query: 133 QLDL 136
           Q+ +
Sbjct: 132 QVSI 135


>gi|328883303|emb|CCA56542.1| Cell division protein FtsH [Streptomyces venezuelae ATCC 10712]
          Length = 672

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 4/58 (6%)

Query: 34  VEACSNLKVFI-EAAKARA---EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VE    +K F+ E AK +A   +    VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 180 VEELHEIKEFLQEPAKFQAVGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISG 237


>gi|328953494|ref|YP_004370828.1| AAA ATPase central domain protein [Desulfobacca acetoxidans DSM
           11109]
 gi|328453818|gb|AEB09647.1| AAA ATPase central domain protein [Desulfobacca acetoxidans DSM
           11109]
          Length = 708

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 37/64 (57%), Gaps = 7/64 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVN-FRSTSGPVIAK-----AGDLAALLTNLEDRD-VL 109
            LF G PG GKT  AQV+A +LG++ FR     V++K     + +L  +L+   D D VL
Sbjct: 489 ALFTGSPGTGKTMAAQVIAAQLGLDLFRIDLSAVVSKYVGETSHNLQHILSRAADMDVVL 548

Query: 110 FIDE 113
           F DE
Sbjct: 549 FFDE 552


>gi|327286230|ref|XP_003227834.1| PREDICTED: 26S protease regulatory subunit 10B-like, partial
           [Anolis carolinensis]
          Length = 382

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 56/124 (45%), Gaps = 23/124 (18%)

Query: 8   LSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV--------L 58
           L  N+S ED  D+S        E  G  E    L+  IE      E    V        L
Sbjct: 111 LVYNMSHEDPGDVSY------SEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCL 164

Query: 59  FVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA-GDLAALLTNLED--RD----VLF 110
             GPPG GKT LA+ VA +L  NF +  S  ++ K  G+ A L+  + +  RD    ++F
Sbjct: 165 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIF 224

Query: 111 IDEI 114
           +DEI
Sbjct: 225 MDEI 228


>gi|330794936|ref|XP_003285532.1| hypothetical protein DICPUDRAFT_46137 [Dictyostelium purpureum]
 gi|325084535|gb|EGC37961.1| hypothetical protein DICPUDRAFT_46137 [Dictyostelium purpureum]
          Length = 438

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTS-GPVIAKA-GDLAALLTNL------EDRDV 108
           +L  GPPG GK+ LA+ VA E+   F S S   ++ K  GD   L+  L      +   V
Sbjct: 165 ILLYGPPGTGKSYLAKAVATEISSTFFSISPSDIVTKWLGDSEKLVKQLFEMAREKKNSV 224

Query: 109 LFIDEIHRL 117
           +FIDE+  L
Sbjct: 225 IFIDEVDSL 233


>gi|312211421|emb|CBX91506.1| similar to AAA family ATPase/60S ribosome export protein Rix7
           [Leptosphaeria maculans]
          Length = 729

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 22/42 (52%), Positives = 23/42 (54%)

Query: 47  AKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           AK    A   VL  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 495 AKVGISAPTGVLLWGPPGCGKTLLAKAVAAESKANFISVKGP 536



 Score = 37.7 bits (86), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLAALLTNLEDRD------V 108
           VL  GPPG GKT + +  A ELGV F    GP I  + +G+    +    +R       +
Sbjct: 192 VLLHGPPGCGKTMICRAFAAELGVPFIEILGPSIVSSMSGESEKQIREHFERAKEVAPCI 251

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 252 IFIDEI 257


>gi|311897757|dbj|BAJ30165.1| putative cell division protein FtsH [Kitasatospora setae KM-6054]
          Length = 669

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 4/58 (6%)

Query: 34  VEACSNLKVFI-EAAKARA---EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VE    +K F+ E AK +A   +    VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 178 VEELHEIKEFLQEPAKFQAVGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISG 235


>gi|302876586|ref|YP_003845219.1| ATP-dependent metalloprotease FtsH [Clostridium cellulovorans 743B]
 gi|307687261|ref|ZP_07629707.1| ATP-dependent metalloprotease FtsH [Clostridium cellulovorans 743B]
 gi|302579443|gb|ADL53455.1| ATP-dependent metalloprotease FtsH [Clostridium cellulovorans 743B]
          Length = 647

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 7/69 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH-------VLFVGPPGLGKTTLAQVVAREL 78
           T ++  G+ E  + L+  ++  K   + L+        +L VGPPG GKT LA+ VA E 
Sbjct: 154 TFKDVAGEDEEKAELQEVVDFLKYPKKYLEMGARIPKGMLLVGPPGTGKTLLAKAVAGEA 213

Query: 79  GVNFRSTSG 87
           GV F S SG
Sbjct: 214 GVPFFSISG 222


>gi|238855043|ref|ZP_04645371.1| ATP-dependent metallopeptidase HflB [Lactobacillus jensenii 269-3]
 gi|260664827|ref|ZP_05865678.1| cell division protein [Lactobacillus jensenii SJ-7A-US]
 gi|282934829|ref|ZP_06340063.1| cell division protease FtsH [Lactobacillus jensenii 208-1]
 gi|313472619|ref|ZP_07813108.1| cell division protein FtsH [Lactobacillus jensenii 1153]
 gi|238832287|gb|EEQ24596.1| ATP-dependent metallopeptidase HflB [Lactobacillus jensenii 269-3]
 gi|260561310|gb|EEX27283.1| cell division protein [Lactobacillus jensenii SJ-7A-US]
 gi|281301101|gb|EFA93411.1| cell division protease FtsH [Lactobacillus jensenii 208-1]
 gi|313448962|gb|EEQ68431.2| cell division protein FtsH [Lactobacillus jensenii 1153]
          Length = 708

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108
           VL  GPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 229 VLLEGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFENAKKTSPSI 288

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 289 IFIDEI 294


>gi|298529831|ref|ZP_07017234.1| ATP-dependent metalloprotease FtsH [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298511267|gb|EFI35170.1| ATP-dependent metalloprotease FtsH [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 613

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 23/31 (74%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           V+ VGPPG GKT LA+ VA E GV+F S +G
Sbjct: 205 VILVGPPGTGKTLLAKAVAGESGVSFLSITG 235


>gi|238576141|ref|XP_002387929.1| hypothetical protein MPER_13118 [Moniliophthora perniciosa FA553]
 gi|215448797|gb|EEB88859.1| hypothetical protein MPER_13118 [Moniliophthora perniciosa FA553]
          Length = 360

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 7/64 (10%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL--GV 80
          RP+T+++ + Q    + L+  + +       L H+LF GPPG GKT+    +AR+L    
Sbjct: 18 RPKTIDDVSAQQHTVAVLQKALTSTN-----LPHMLFYGPPGTGKTSTILALARQLFGPD 72

Query: 81 NFRS 84
          NFRS
Sbjct: 73 NFRS 76


>gi|194759542|ref|XP_001962006.1| GF14649 [Drosophila ananassae]
 gi|190615703|gb|EDV31227.1| GF14649 [Drosophila ananassae]
          Length = 992

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 17/27 (62%), Positives = 18/27 (66%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFR 83
            L  GPPGLGKTTLA  +AR  G N R
Sbjct: 423 ALLCGPPGLGKTTLAHTIARHAGYNVR 449


>gi|168001607|ref|XP_001753506.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162695385|gb|EDQ81729.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 688

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 262 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 292


>gi|164655411|ref|XP_001728835.1| hypothetical protein MGL_4002 [Malassezia globosa CBS 7966]
 gi|159102721|gb|EDP41621.1| hypothetical protein MGL_4002 [Malassezia globosa CBS 7966]
          Length = 1097

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 75/180 (41%), Gaps = 41/180 (22%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF------------------RSTSGPVIAKAGDLAA 98
           +  VGPPG+GKT++ + +AR L   F                  R+  G +  KA  + A
Sbjct: 608 ICLVGPPGVGKTSIGKSIARALDRQFYRFSVGGLSDVAEIKGHRRTYVGAMPGKA--IQA 665

Query: 99  LLTNLEDRDVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN 150
           L     +  ++ IDE+ +L        S  + E+L P      LD  +        V ++
Sbjct: 666 LKKVGTENPLILIDEVDKLGRGYNGDPSSALLEMLDPEQNSSFLDHYM-------DVPVD 718

Query: 151 LSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ-----RGAKLTGLAVTD 205
           LSR   +     +  +  PL DR  + I ++ Y  E+ + I +     +  + +GL  TD
Sbjct: 719 LSRVLFVCTANTLDTIPQPLLDRMEV-IEVSSYTAEEKRHIARDYLAPQAKEASGLKDTD 777


>gi|152990291|ref|YP_001356013.1| ATP-dependent protease ATP-binding subunit ClpX [Nitratiruptor sp.
           SB155-2]
 gi|151422152|dbj|BAF69656.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Nitratiruptor
           sp. SB155-2]
          Length = 409

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 14/84 (16%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---ED 105
           A  +VLF+GP G GKT +AQ +A+ L V         + +AG    D+  +LT L    D
Sbjct: 106 AKSNVLFIGPTGSGKTLMAQTMAKVLDVPLAIADATSLTEAGYVGEDVENILTRLYHAAD 165

Query: 106 RDV-------LFIDEIHRLSIIVE 122
            DV       +FIDEI +++ + E
Sbjct: 166 EDVKKAEKGIVFIDEIDKIARLSE 189


>gi|150003036|ref|YP_001297780.1| ATP-dependent protease ATP-binding subunit ClpX [Bacteroides
           vulgatus ATCC 8482]
 gi|254883674|ref|ZP_05256384.1| ATP-dependent protease ATP-binding subunit [Bacteroides sp.
           4_3_47FAA]
 gi|294775660|ref|ZP_06741168.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides
           vulgatus PC510]
 gi|319642189|ref|ZP_07996849.1| ATP-dependent Clp protease ATP-binding subunit [Bacteroides sp.
           3_1_40A]
 gi|149931460|gb|ABR38158.1| ATP-dependent Clp protease ATP-binding subunit [Bacteroides
           vulgatus ATCC 8482]
 gi|254836467|gb|EET16776.1| ATP-dependent protease ATP-binding subunit [Bacteroides sp.
           4_3_47FAA]
 gi|294450504|gb|EFG18996.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides
           vulgatus PC510]
 gi|317386175|gb|EFV67094.1| ATP-dependent Clp protease ATP-binding subunit [Bacteroides sp.
           3_1_40A]
          Length = 416

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 61/127 (48%), Gaps = 29/127 (22%)

Query: 21  LLRPRTLEEF-----TGQVEACSNLKVFIEAAKARA-EALD---------HVLFVGPPGL 65
           L +P+ ++EF      GQ +A   L V +     R  + +D         +++ VG  G 
Sbjct: 66  LPKPKEIKEFLDQYIIGQDDAKRYLSVAVYNHYKRLLQKVDKDDIEIEKSNIIMVGSTGT 125

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL----------EDRDVLFI 111
           GKT LA+ +A+ L V F      V+ +AG    D+ +LLT L           +R ++FI
Sbjct: 126 GKTLLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESLLTRLLQVADYNVAEAERGIVFI 185

Query: 112 DEIHRLS 118
           DEI +++
Sbjct: 186 DEIDKIA 192


>gi|119512416|ref|ZP_01631499.1| AAA ATPase, central region [Nodularia spumigena CCY9414]
 gi|119462945|gb|EAW43899.1| AAA ATPase, central region [Nodularia spumigena CCY9414]
          Length = 611

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 8/75 (10%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDRD-- 107
           E    VL VGP G GKT  A+ +A ELGVN+ +  GP VI K  G+    L  + ++   
Sbjct: 123 EPTHGVLLVGPSGTGKTLTARALAEELGVNYIALVGPEVITKYYGEAEQKLRAIFEKAAK 182

Query: 108 ----VLFIDEIHRLS 118
               ++FIDEI  L+
Sbjct: 183 NAPCIIFIDEIDSLA 197



 Score = 40.0 bits (92), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 8/79 (10%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLT 101
           + +A A   +L  GPPG GKT LA+ VA +   NF   +GP      V A    +  L  
Sbjct: 385 ETKARAPKGILLWGPPGTGKTLLAKAVASQARANFIGINGPDLLSRWVGASEQAVRELFA 444

Query: 102 NLEDRD--VLFIDEIHRLS 118
                D  V+FIDE+  L+
Sbjct: 445 KARQADPCVIFIDELDTLA 463


>gi|119492884|ref|ZP_01623933.1| ATP-dependent Zn protease [Lyngbya sp. PCC 8106]
 gi|119452912|gb|EAW34085.1| ATP-dependent Zn protease [Lyngbya sp. PCC 8106]
          Length = 618

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 195 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 225


>gi|49258183|gb|AAH73644.1| Psmc6 protein [Xenopus laevis]
          Length = 392

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 56/124 (45%), Gaps = 23/124 (18%)

Query: 8   LSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV--------L 58
           L  N+S ED  D+S        E  G  E    L+  IE      E    V        L
Sbjct: 121 LVYNMSHEDPGDVSY------SEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCL 174

Query: 59  FVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA-GDLAALLTNLED--RD----VLF 110
             GPPG GKT LA+ VA +L  NF +  S  ++ K  G+ A L+  + +  RD    ++F
Sbjct: 175 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIF 234

Query: 111 IDEI 114
           +DEI
Sbjct: 235 MDEI 238


>gi|321454581|gb|EFX65746.1| hypothetical protein DAPPUDRAFT_303531 [Daphnia pulex]
          Length = 343

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 6/62 (9%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE-LGVN 81
          RP T  E  G  +A   L+VF     AR     +++  GPPG+GKTT    +AR  LG N
Sbjct: 30 RPTTFGEIVGNEDAVGRLEVF-----AREGNTPNIIIAGPPGVGKTTTILCLARTLLGPN 84

Query: 82 FR 83
          ++
Sbjct: 85 YK 86


>gi|224051966|ref|XP_002200452.1| PREDICTED: proteasome (prosome, macropain) 26S subunit, ATPase, 6
           [Taeniopygia guttata]
          Length = 360

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 56/124 (45%), Gaps = 23/124 (18%)

Query: 8   LSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV--------L 58
           L  N+S ED  D+S        E  G  E    L+  IE      E    V        L
Sbjct: 89  LVYNMSHEDPGDVSY------SEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCL 142

Query: 59  FVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA-GDLAALLTNLED--RD----VLF 110
             GPPG GKT LA+ VA +L  NF +  S  ++ K  G+ A L+  + +  RD    ++F
Sbjct: 143 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIF 202

Query: 111 IDEI 114
           +DEI
Sbjct: 203 MDEI 206


>gi|219851054|ref|YP_002465486.1| ATPase associated with various cellular activities AAA_3
           [Methanosphaerula palustris E1-9c]
 gi|219545313|gb|ACL15763.1| ATPase associated with various cellular activities AAA_3
           [Methanosphaerula palustris E1-9c]
          Length = 324

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 12/90 (13%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAAL-LTNLEDR-------- 106
           HVL  G PG  KTT++++VAR +G  F    G V  +  D+  + + + E          
Sbjct: 47  HVLIDGVPGTAKTTISKIVARLIGYQFSRVQGAVDVQPTDIVGIRIYDNETHKFSLQKGP 106

Query: 107 ---DVLFIDEIHRLSIIVEEILYPAMEDFQ 133
              + + IDEI+RL+   +     AM + Q
Sbjct: 107 IFANFVMIDEINRLTPKTQSAFIEAMAEHQ 136


>gi|194884696|ref|XP_001976314.1| GG20087 [Drosophila erecta]
 gi|190659501|gb|EDV56714.1| GG20087 [Drosophila erecta]
          Length = 737

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 35/70 (50%), Gaps = 7/70 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78
           T E+  G  EA   LK  +E  K+  +  +        VL VGPPG GKT LA+ VA E 
Sbjct: 299 TFEDVKGCDEAKQELKEVVEFLKSPEKFSNLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 358

Query: 79  GVNFRSTSGP 88
            V F   +GP
Sbjct: 359 KVPFFHAAGP 368


>gi|153009535|ref|YP_001370750.1| ATP-dependent protease ATP-binding subunit ClpX [Ochrobactrum
           anthropi ATCC 49188]
 gi|166214795|sp|A6X117|CLPX_OCHA4 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|151561423|gb|ABS14921.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ochrobactrum
           anthropi ATCC 49188]
          Length = 424

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L VGP G GKT LAQ +AR + V F       + +AG +   + N+         
Sbjct: 112 AKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 171

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDE+ ++S
Sbjct: 172 YNVERAQRGIVYIDEVDKIS 191


>gi|56202307|dbj|BAD73766.1| katanin-like [Oryza sativa Japonica Group]
 gi|56784878|dbj|BAD82149.1| katanin-like [Oryza sativa Japonica Group]
          Length = 305

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLED------RDV 108
           VL  GPPG GKT LA+ VA E G  F + S   +A    G+   ++  L D         
Sbjct: 57  VLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARFYAPST 116

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 117 IFIDEIDSL 125


>gi|34556512|ref|NP_906327.1| ATP-dependent protease ATP-binding subunit ClpX [Wolinella
           succinogenes DSM 1740]
 gi|46576390|sp|Q7MAS4|CLPX1_WOLSU RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX 1
 gi|34482226|emb|CAE09227.1| CLP PROTEASE [Wolinella succinogenes]
          Length = 417

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 14/81 (17%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT +AQ +AR L V         + +AG    D+  +LT L        
Sbjct: 113 NILLIGPTGSGKTLMAQTLARFLNVPIAICDATSLTEAGYVGEDVENILTRLLQAAEGDV 172

Query: 104 --EDRDVLFIDEIHRLSIIVE 122
              +R ++FIDEI ++S + E
Sbjct: 173 KKAERGIVFIDEIDKISRLSE 193


>gi|93004934|ref|YP_579371.1| recombination factor protein RarA [Psychrobacter cryohalolentis K5]
 gi|92392612|gb|ABE73887.1| Recombination protein MgsA [Psychrobacter cryohalolentis K5]
          Length = 429

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 69/265 (26%), Positives = 105/265 (39%), Gaps = 53/265 (20%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP TL+   GQ   +   + L+  +E        L  ++  G  G+GKTT+A ++A  +
Sbjct: 15  MRPTTLDAIIGQEHLLAVGAPLRRLVEQGH-----LPSIILHGEAGIGKTTIAMLLADAV 69

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLSIIVEEILYPAMED 131
              F + S    A    +  L   L+ +D       V+FIDEIHR +   ++ L  A+E 
Sbjct: 70  ERPFHALS----ALNTGVKQLREVLDSKDSLSFESPVVFIDEIHRFNKAQQDALLGAVES 125

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT--NPLQDRFGIPIRLNFYEIEDLK 189
                                  TLI ATT     +  N L  R  +  RL     E + 
Sbjct: 126 --------------------GDITLIGATTENPSFSVNNALLSRCQV-YRLKPLTPEQIS 164

Query: 190 TIVQRG----AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA-----KT 240
            ++QR       L  L+V  +A   I+  + G  R A  LL      A+   +      T
Sbjct: 165 AVLQRALLEDNILKNLSVDLQAQDTISQLAHGDARKALNLLELAIQTADTKQSPIILDDT 224

Query: 241 ITREIADAALLRLAIDKMGFDQLDL 265
           +   IA  AL+R   DK G    D+
Sbjct: 225 LVARIAQTALVRY--DKDGEQHYDM 247


>gi|330964513|gb|EGH64773.1| ATP-dependent protease La [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 805

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 87/215 (40%), Gaps = 53/215 (24%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAKAGDLAALLT 101
           VL VGPPG+GKT++ + +A  LG  F   S                 + A+ G L   L 
Sbjct: 387 VLLVGPPGVGKTSVGRSIAESLGRPFYRLSVGGMRDEAEIKGHRRTYIGAQPGKLVQALK 446

Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAME----DFQLDLMVGEGPSARSVK 148
           ++E  + V+ +DEI ++    +        E L P       D  LDL           +
Sbjct: 447 DVEVMNPVIMLDEIDKMGQSYQGDPASALLETLDPEQNVEFLDHYLDL-----------R 495

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR----------GAKL 198
           ++LS+   +     +  +  PL DR  + IRL+ Y  E+   I +R          G   
Sbjct: 496 LDLSKVLFVCTANTLDSIPGPLLDRMEV-IRLSGYITEEKLAIAKRHLWPKQLAKAGVAK 554

Query: 199 TGLAVTD---EAACEIAMRSRGTPRIAGRLLRRVR 230
           + L+++D    A  E   R  G   +  +L + VR
Sbjct: 555 SKLSISDTALRAVIEGYAREAGVRHLEKQLGKLVR 589


>gi|319404100|emb|CBI77690.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bartonella
           rochalimae ATCC BAA-1498]
          Length = 398

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L VGP G GKT LAQ +AR + V F       + +AG +   + N+         
Sbjct: 86  AKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQSAD 145

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDE+ ++S
Sbjct: 146 YNVERAQRGIVYIDEVDKIS 165


>gi|296421944|ref|XP_002840523.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295636741|emb|CAZ84714.1| unnamed protein product [Tuber melanosporum]
          Length = 387

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           RP TL + +G  +  + +  F++  +     L H+LF GPPG GKT+    +AR +
Sbjct: 50  RPDTLNDVSGHEDILTTINKFVQTNR-----LPHLLFYGPPGTGKTSTILALARHI 100


>gi|284931036|gb|ADC30974.1| cell division protease ftsH-like protein [Mycoplasma gallisepticum
           str. F]
          Length = 765

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 73/151 (48%), Gaps = 20/151 (13%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           V+  GPPG GKT LA+ VA E GV F   +G        G  A  + NL  +       +
Sbjct: 310 VVLYGPPGTGKTLLAKAVAGEAGVPFFQVTGSAFEDMLVGVGAKRVRNLFAKAKKAAPCI 369

Query: 109 LFIDEIHRLSII--VEEILYPAMEDFQLDLMVGE--GPSARSVKINLSRFTLIAATTRVG 164
           +FIDEI  +       EI   +  D  L+ ++ E  G S R+  I      ++AAT R+ 
Sbjct: 370 IFIDEIDSVGSKRGKYEISAGSATDQTLNQLLAEMDGFSTRTGII------VMAATNRLD 423

Query: 165 LLTNPL--QDRFGIPIRLNFYEIEDLKTIVQ 193
           +L + L    RF   I++N  +I++ + I++
Sbjct: 424 VLDDALLRPGRFDRHIQVNLPDIKEREAILK 454


>gi|239831861|ref|ZP_04680190.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ochrobactrum
           intermedium LMG 3301]
 gi|239824128|gb|EEQ95696.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ochrobactrum
           intermedium LMG 3301]
          Length = 424

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L VGP G GKT LAQ +AR + V F       + +AG +   + N+         
Sbjct: 112 AKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 171

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDE+ ++S
Sbjct: 172 YNVERAQRGIVYIDEVDKIS 191


>gi|237725285|ref|ZP_04555766.1| ATP-dependent protease ATP-binding subunit [Bacteroides sp. D4]
 gi|229436551|gb|EEO46628.1| ATP-dependent protease ATP-binding subunit [Bacteroides dorei
           5_1_36/D4]
          Length = 416

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 61/127 (48%), Gaps = 29/127 (22%)

Query: 21  LLRPRTLEEF-----TGQVEACSNLKVFIEAAKARA-EALD---------HVLFVGPPGL 65
           L +P+ ++EF      GQ +A   L V +     R  + +D         +++ VG  G 
Sbjct: 66  LPKPKEIKEFLDQYIIGQDDAKRYLSVAVYNHYKRLLQKVDKDDIEIEKSNIIMVGSTGT 125

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL----------EDRDVLFI 111
           GKT LA+ +A+ L V F      V+ +AG    D+ +LLT L           +R ++FI
Sbjct: 126 GKTLLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESLLTRLLQVADYNVAEAERGIVFI 185

Query: 112 DEIHRLS 118
           DEI +++
Sbjct: 186 DEIDKIA 192


>gi|255280597|ref|ZP_05345152.1| cell division protein FtsH [Bryantella formatexigens DSM 14469]
 gi|255269062|gb|EET62267.1| cell division protein FtsH [Bryantella formatexigens DSM 14469]
          Length = 609

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 53/118 (44%), Gaps = 19/118 (16%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           EG+   +V+ ED           E  T  V+   N + + E   +  + L   L VGPPG
Sbjct: 160 EGIHFSDVAGED--------EAKESLTEIVDYLHNPQKYTEVGASMPKGL---LLVGPPG 208

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--VLFIDEI 114
            GKT LA+ VA E  V F S SG    +      A  +  L    +++   ++FIDEI
Sbjct: 209 TGKTMLAKAVAGEANVPFFSISGSEFVEMFVGMGASKVRDLFKQAKEKAPCIVFIDEI 266


>gi|182420046|ref|ZP_02951280.1| putative Cell division protease FtsH [Clostridium butyricum 5521]
 gi|237669537|ref|ZP_04529517.1| cell division protease FtsH [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182376083|gb|EDT73670.1| putative Cell division protease FtsH [Clostridium butyricum 5521]
 gi|237654981|gb|EEP52541.1| cell division protease FtsH [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 601

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           +L VGPPG GKT LA+ +A E GV F S SG
Sbjct: 195 ILLVGPPGTGKTLLAKAIAGEAGVPFFSISG 225


>gi|167855228|ref|ZP_02477998.1| ATP-dependent protease ATP-binding subunit [Haemophilus parasuis
           29755]
 gi|219872048|ref|YP_002476423.1| ATP-dependent protease ATP-binding subunit ClpX [Haemophilus
           parasuis SH0165]
 gi|167853681|gb|EDS24925.1| ATP-dependent protease ATP-binding subunit [Haemophilus parasuis
           29755]
 gi|219692252|gb|ACL33475.1| ATP-dependent protease ATP-binding subunit [Haemophilus parasuis
           SH0165]
          Length = 416

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LA+ +AR L V F       + +AG +   + N+            
Sbjct: 119 NILLIGPTGSGKTLLAETLARRLNVPFAVADATTLTQAGYVGEDVENVIQKLLMKCDFDK 178

Query: 104 --EDRDVLFIDEIHRLS 118
              +R ++FIDEI +++
Sbjct: 179 DQAERGIIFIDEIDKIT 195


>gi|37522147|ref|NP_925524.1| cell division protein [Gloeobacter violaceus PCC 7421]
 gi|35213147|dbj|BAC90519.1| cell division protein [Gloeobacter violaceus PCC 7421]
          Length = 630

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 210 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 240


>gi|67926179|ref|ZP_00519407.1| AAA ATPase, central region:Peptidase M41, FtsH extracellular
           [Crocosphaera watsonii WH 8501]
 gi|67851976|gb|EAM47507.1| AAA ATPase, central region:Peptidase M41, FtsH extracellular
           [Crocosphaera watsonii WH 8501]
          Length = 354

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 198 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 228


>gi|322389613|ref|ZP_08063161.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           parasanguinis ATCC 903]
 gi|321143612|gb|EFX39042.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           parasanguinis ATCC 903]
          Length = 410

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +AR L V F       + +AG    D+  +L  L        
Sbjct: 114 NILMIGPTGSGKTFLAQTLARSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNI 173

Query: 104 --EDRDVLFIDEIHRLS 118
              +R ++++DEI +++
Sbjct: 174 ERAERGIIYVDEIDKIA 190


>gi|303248989|ref|ZP_07335235.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfovibrio
           fructosovorans JJ]
 gi|302489638|gb|EFL49576.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfovibrio
           fructosovorans JJ]
          Length = 417

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 62/145 (42%), Gaps = 31/145 (21%)

Query: 5   EGLLSRNVSQEDADISLLRP----RTLEEFT-GQVEACSNLKVFIEAAKARAEAL----- 54
           E +   +VS+E     LL P    R L+E+  GQ +A   L V +     R         
Sbjct: 45  EIIAQESVSEETEGGKLLPPAEIKRLLDEYVIGQEQAKKILAVAVHNHYKRVYYAGAAAA 104

Query: 55  -------DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD--------LAAL 99
                   ++L +GP G GKT LAQ +AR L V F       + +AG         L  L
Sbjct: 105 DDVEIDKSNILLIGPTGSGKTLLAQTLARVLNVPFAIADATTLTEAGYVGEDVENILVQL 164

Query: 100 LTNLE------DRDVLFIDEIHRLS 118
           L N +       R +++IDEI +++
Sbjct: 165 LQNADYDIEAASRGIIYIDEIDKIA 189


>gi|239609886|gb|EEQ86873.1| ribosome biogenesis ATPase RIX7 [Ajellomyces dermatitidis ER-3]
          Length = 751

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 34/72 (47%), Gaps = 3/72 (4%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           ADI  L     E  T  VE   N  ++   A+    A   VL  GPPG GKT LA+ VA 
Sbjct: 490 ADIGALGGIRDELATAIVEPIRNPDIY---ARVGITAPTGVLLWGPPGCGKTLLAKAVAN 546

Query: 77  ELGVNFRSTSGP 88
           E   NF S  GP
Sbjct: 547 ESRANFISVKGP 558



 Score = 39.3 bits (90), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL  GPPG GKT +A   A ELGV F + S P I    +G+    L    D        +
Sbjct: 214 VLLHGPPGCGKTMIANAFAAELGVPFIAISAPSIVSGMSGESEKALREHFDEAKKVAPCL 273

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 274 IFIDEIDAIT 283


>gi|261198899|ref|XP_002625851.1| ribosome biogenesis ATPase RIX7 [Ajellomyces dermatitidis SLH14081]
 gi|239595003|gb|EEQ77584.1| ribosome biogenesis ATPase RIX7 [Ajellomyces dermatitidis SLH14081]
          Length = 751

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 34/72 (47%), Gaps = 3/72 (4%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           ADI  L     E  T  VE   N  ++   A+    A   VL  GPPG GKT LA+ VA 
Sbjct: 490 ADIGALGGIRDELATAIVEPIRNPDIY---ARVGITAPTGVLLWGPPGCGKTLLAKAVAN 546

Query: 77  ELGVNFRSTSGP 88
           E   NF S  GP
Sbjct: 547 ESRANFISVKGP 558



 Score = 39.3 bits (90), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL  GPPG GKT +A   A ELGV F + S P I    +G+    L    D        +
Sbjct: 214 VLLHGPPGCGKTMIANAFAAELGVPFIAISAPSIVSGMSGESEKALREHFDEAKKVAPCL 273

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 274 IFIDEIDAIT 283


>gi|255582129|ref|XP_002531859.1| Cell division protein ftsH, putative [Ricinus communis]
 gi|223528509|gb|EEF30537.1| Cell division protein ftsH, putative [Ricinus communis]
          Length = 1157

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 247 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSG 277


>gi|239813169|ref|YP_002942079.1| ATPase AAA [Variovorax paradoxus S110]
 gi|239799746|gb|ACS16813.1| AAA ATPase central domain protein [Variovorax paradoxus S110]
          Length = 775

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 31/57 (54%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           T  +F+   E    L   + AA AR E   +VL  GPPG GKT LA+VVA+  G+  
Sbjct: 283 TTHDFSFVEEDAQMLVTLLRAAVARKEPGVNVLLYGPPGTGKTELAKVVAQAAGLEL 339


>gi|195434144|ref|XP_002065063.1| GK15259 [Drosophila willistoni]
 gi|194161148|gb|EDW76049.1| GK15259 [Drosophila willistoni]
          Length = 331

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP  LE+     E  S +  FI   +     L H+LF GPPG GKT+     AR+L
Sbjct: 17 RPNNLEDLISHEEIVSTINRFIGQKQ-----LPHLLFYGPPGTGKTSTILACARQL 67


>gi|168040828|ref|XP_001772895.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162675806|gb|EDQ62297.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 696

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 270 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 300


>gi|146417537|ref|XP_001484737.1| hypothetical protein PGUG_02466 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 819

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL  GPPG GKTT+A  +A EL V F + S P +    +G+    L  + D        +
Sbjct: 224 VLLYGPPGCGKTTIANALAGELKVPFLNISAPSVVSGMSGESEKKLREIFDEAKSLAPCL 283

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 284 VFIDEIDAIT 293



 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 546 VLMWGPPGCGKTLLAKAVANESRANFISIKGP 577


>gi|11467752|ref|NP_050804.1| cell division protein [Guillardia theta]
 gi|6016057|sp|O78516|FTSH_GUITH RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|3603077|gb|AAC35738.1| hypothetical chloroplast RF25 [Guillardia theta]
          Length = 631

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ +A E GV F S SG       V   A  +  L    ++    +
Sbjct: 209 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENSPCI 268

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 269 VFIDEI 274


>gi|254495433|ref|ZP_05108357.1| AAA-metalloprotease FtsH, with ATPase domain [Polaribacter sp.
           MED152]
 gi|85819788|gb|EAQ40945.1| AAA-metalloprotease FtsH, with ATPase domain [Polaribacter sp.
           MED152]
          Length = 657

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 34/65 (52%), Gaps = 8/65 (12%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DVL 109
           L VGPPG GKT LA+ VA E GV F S SG       V   A  +  L    + +   ++
Sbjct: 232 LLVGPPGTGKTLLAKAVAGEAGVPFFSLSGSDFVEMFVGVGASRVRDLFKQAQQKSPSII 291

Query: 110 FIDEI 114
           FIDEI
Sbjct: 292 FIDEI 296


>gi|325282854|ref|YP_004255395.1| ATPase associated with various cellular activities AAA_3
           [Deinococcus proteolyticus MRP]
 gi|324314663|gb|ADY25778.1| ATPase associated with various cellular activities AAA_3
           [Deinococcus proteolyticus MRP]
          Length = 318

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 72/159 (45%), Gaps = 24/159 (15%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKAGDLAALLTNLEDR-------- 106
           H+L    PG+GKTTLA  +AR LG++F R      +  A  L   + + E R        
Sbjct: 51  HLLIEDQPGVGKTTLAGALARTLGLDFGRVQFTADLLPADLLGVSIWDSETRSFHFHAGP 110

Query: 107 ---DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
               VL  DEI+R +   +  L  AME+ Q    V EG  +R +      F +IA     
Sbjct: 111 VFTSVLLADEINRATPKTQGALLEAMEERQ----VSEGGVSRPLP---DPFFVIATQNPA 163

Query: 164 GLL-TNPLQ----DRFGIPIRLNFYEIEDLKTIVQRGAK 197
             + T+PL     DRF + + L + +    + +++ G +
Sbjct: 164 AFVGTSPLPEAQLDRFLLTVTLGYPDARAERELLETGGR 202


>gi|317488913|ref|ZP_07947443.1| ATP-dependent metallopeptidase HflB [Eggerthella sp. 1_3_56FAA]
 gi|316911987|gb|EFV33566.1| ATP-dependent metallopeptidase HflB [Eggerthella sp. 1_3_56FAA]
          Length = 725

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
            L VGPPG GKT LA+ VA E GV F S SG       V   A  +  L    +D    +
Sbjct: 228 CLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFQQAKDASPAI 287

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 288 IFIDEI 293


>gi|303388295|ref|XP_003072382.1| DNA replication factor C small subunit [Encephalitozoon
           intestinalis ATCC 50506]
 gi|303301522|gb|ADM11022.1| DNA replication factor C small subunit [Encephalitozoon
           intestinalis ATCC 50506]
          Length = 305

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 81/206 (39%), Gaps = 32/206 (15%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE----- 77
           RP +L++  G  E  + LK      K     + ++LF GPPG GKTT  + +A       
Sbjct: 10  RPESLQQVVGNREIVAALKSISSTNK-----IPNMLFYGPPGTGKTTSIRAIANNLPRSC 64

Query: 78  -LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
            L +N     G    +        T  +   ++ +DE   +S   +  L   +EDF  + 
Sbjct: 65  VLELNASDERGIATVRETIKEFASTYSKTTKLVILDEADMMSRDAQNALRRIIEDFSAN- 123

Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA 196
                          +RF LIA  +R   +  P+  R     +  F  IED ++ ++   
Sbjct: 124 ---------------ARFCLIANHSRK--IIPPILSRC---TKFRFGPIEDTESRIKEIC 163

Query: 197 KLTGLAVTDEAACEIAMRSRGTPRIA 222
           K   +  ++E    IA  S G  R A
Sbjct: 164 KKENIKYSEEGIKGIAEISEGDMRKA 189


>gi|302535218|ref|ZP_07287560.1| cell division protein FtsH [Streptomyces sp. C]
 gi|302444113|gb|EFL15929.1| cell division protein FtsH [Streptomyces sp. C]
          Length = 677

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 4/58 (6%)

Query: 34  VEACSNLKVFI-EAAKARA---EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VE    +K F+ E AK +A   +    VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 182 VEELHEIKEFLQEPAKFQAVGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISG 239


>gi|297587579|ref|ZP_06946223.1| M41 family endopeptidase FtsH [Finegoldia magna ATCC 53516]
 gi|297574268|gb|EFH92988.1| M41 family endopeptidase FtsH [Finegoldia magna ATCC 53516]
          Length = 628

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LAQ VA E  V F S SG
Sbjct: 199 VLLVGPPGTGKTLLAQAVAGEAKVPFFSMSG 229


>gi|171463606|ref|YP_001797719.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Polynucleobacter necessarius subsp. necessarius STIR1]
 gi|226706593|sp|B1XUS8|CLPX_POLNS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|171193144|gb|ACB44105.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Polynucleobacter necessarius subsp. necessarius STIR1]
          Length = 453

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD------------LAALL 100
           A  ++L +GP G GKT LAQ +AR L V F       + +AG             L A  
Sbjct: 140 AKSNILLIGPTGSGKTLLAQTLARMLDVPFVMADATTLTEAGYVGEDVENIIQKLLQACD 199

Query: 101 TNLE--DRDVLFIDEIHRLS 118
            N+E   R +++IDEI ++S
Sbjct: 200 YNVEKAQRGIVYIDEIDKIS 219


>gi|157736713|ref|YP_001489396.1| cell division protein FtsH [Arcobacter butzleri RM4018]
 gi|157698567|gb|ABV66727.1| cell division protein FtsH [Arcobacter butzleri RM4018]
          Length = 661

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E  V F S SG
Sbjct: 230 VLLVGPPGTGKTLLAKAVAGEANVEFLSVSG 260


>gi|20151923|gb|AAM11321.1| SD07712p [Drosophila melanogaster]
          Length = 874

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 18/26 (69%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFR 83
           L  GPPGLGKTTLA  +AR  G N R
Sbjct: 305 LLCGPPGLGKTTLAHTIARHAGYNVR 330


>gi|21221831|ref|NP_627610.1| cell division protein ftsH-like protein [Streptomyces coelicolor
           A3(2)]
 gi|256786989|ref|ZP_05525420.1| cell division protein ftsH-like protein [Streptomyces lividans
           TK24]
 gi|289770882|ref|ZP_06530260.1| cell division protein FtsH [Streptomyces lividans TK24]
 gi|4808343|emb|CAB42757.1| cell division protein ftsH homolog [Streptomyces coelicolor A3(2)]
 gi|289701081|gb|EFD68510.1| cell division protein FtsH [Streptomyces lividans TK24]
          Length = 668

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 4/58 (6%)

Query: 34  VEACSNLKVFI-EAAKARA---EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VE    +K F+ E AK +A   +    VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 169 VEELHEIKEFLQEPAKFQAVGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISG 226


>gi|322800189|gb|EFZ21274.1| hypothetical protein SINV_12219 [Solenopsis invicta]
          Length = 154

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 18/35 (51%), Positives = 22/35 (62%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           A+  VL  GPPG GKT  A+ +A E G+NF S  G
Sbjct: 104 AVSGVLLYGPPGCGKTMAAKAIANEAGINFISIKG 138


>gi|322391568|ref|ZP_08065037.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           peroris ATCC 700780]
 gi|321145651|gb|EFX41043.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           peroris ATCC 700780]
          Length = 410

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +AR L V F       + +AG    D+  +L  L        
Sbjct: 114 NILMIGPTGSGKTFLAQTLARSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNI 173

Query: 104 --EDRDVLFIDEIHRLS 118
              +R ++++DEI +++
Sbjct: 174 ERAERGIIYVDEIDKIA 190


>gi|315635885|ref|ZP_07891147.1| cell division protein FtsH [Arcobacter butzleri JV22]
 gi|315479864|gb|EFU70535.1| cell division protein FtsH [Arcobacter butzleri JV22]
          Length = 662

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E  V F S SG
Sbjct: 230 VLLVGPPGTGKTLLAKAVAGEANVEFLSVSG 260


>gi|302846326|ref|XP_002954700.1| hypothetical protein VOLCADRAFT_64976 [Volvox carteri f.
           nagariensis]
 gi|300260119|gb|EFJ44341.1| hypothetical protein VOLCADRAFT_64976 [Volvox carteri f.
           nagariensis]
          Length = 594

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 68/154 (44%), Gaps = 41/154 (26%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAAL----LTNL 103
           KA      H+LF GPPG G+T +A+ +AR  G+++   SG      GD+A L    +T L
Sbjct: 326 KAHGAPFRHMLFYGPPGTGETMVAKRMARTSGLDYAIMSG------GDVAPLEGRAVTQL 379

Query: 104 EDRD----------VLFIDE----IHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKI 149
                         +LFIDE    + R S  + E L  ++      L+   G  +R    
Sbjct: 380 HQTFDWAEKSRRGLLLFIDEADAFLGRRSDSMSEGLRGSLN----ALLFRTGDQSRD--- 432

Query: 150 NLSRFTLIAATTRVGLLTNPLQDR------FGIP 177
               F ++ AT R G L + + DR      FG+P
Sbjct: 433 ----FMVVLATNRPGDLDDAVLDRMDEALEFGLP 462


>gi|302818219|ref|XP_002990783.1| hypothetical protein SELMODRAFT_185567 [Selaginella moellendorffii]
 gi|300141344|gb|EFJ08056.1| hypothetical protein SELMODRAFT_185567 [Selaginella moellendorffii]
          Length = 691

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 264 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 294


>gi|300790552|ref|YP_003770843.1| cell division protease FtsH [Amycolatopsis mediterranei U32]
 gi|299800066|gb|ADJ50441.1| cell division protease FtsH [Amycolatopsis mediterranei U32]
          Length = 799

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 33/59 (55%), Gaps = 6/59 (10%)

Query: 34  VEACSNLKVFIEAAKARAEAL-----DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VE    +K F++   AR +AL       VL  GPPG GKT LA+ VA E GV F + SG
Sbjct: 180 VEELYEIKDFLQNP-ARYQALGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYTISG 237


>gi|297613356|ref|NP_001067045.2| Os12g0565100 [Oryza sativa Japonica Group]
 gi|255670397|dbj|BAF30064.2| Os12g0565100 [Oryza sativa Japonica Group]
          Length = 832

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 89/196 (45%), Gaps = 20/196 (10%)

Query: 40  LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAAL 99
           +K+  E   A ++ L  +  VGP GLGKTTLA  V R+L   F+  +   +++  D+  +
Sbjct: 308 IKLLTEGEGASSQKLKVISIVGPGGLGKTTLANEVFRKLESQFQCRAFVSLSQQPDVKKI 367

Query: 100 LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD----LMVGEGPSARSVK-INLSRF 154
           + N+  +  +   E   + I  EE L  A  +F  +    +++ +  S ++ K I  + F
Sbjct: 368 VRNIYCQ--VSQQEYGNIDIWDEEKLINATREFLTNKRYFVVIDDIWSTQAWKTIRCALF 425

Query: 155 -----TLIAATTR----VGLLTNPLQDR-FGI-PIRLNFYEIEDLKTIVQRGAKLTGLAV 203
                + I  TTR          P  DR F I P+ ++  +   LK I   G+K   +  
Sbjct: 426 VNNCGSRIMTTTRNMAIAKSCCTPDHDRVFEIMPLSIDNSKSLFLKRIF--GSKDVCIPQ 483

Query: 204 TDEAACEIAMRSRGTP 219
            DE   EI  +  G+P
Sbjct: 484 LDEVCYEILKKCGGSP 499


>gi|289577298|ref|YP_003475925.1| DNA polymerase III subunits gamma and tau [Thermoanaerobacter
           italicus Ab9]
 gi|289527011|gb|ADD01363.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter
           italicus Ab9]
          Length = 515

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 64/263 (24%), Positives = 109/263 (41%), Gaps = 40/263 (15%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH-VLFVGPPGLGKTTLAQVVARELGVN 81
           RP++ +E  GQ      LK      + +   + H  LF G  G GKT++A++ A+   VN
Sbjct: 10  RPKSFKEVVGQEHIVKTLK-----NQIKLNRIGHAYLFTGTRGTGKTSIAKIFAK--AVN 62

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI-----IVEEILY-PAMEDFQLD 135
             + +      + D+   + N    DVL ID     S+     + E ++Y P+   +++ 
Sbjct: 63  CLNNAEGEPCNSCDICHAINNNTTMDVLEIDAASNNSVNDVRELRESVIYAPSQTKYKVY 122

Query: 136 L-----MVGEGPSA---RSVKINLSRFTLIAATTRVGLLTNPLQDRFG------IPIRLN 181
           +     M+  G      ++++   S    I ATT    L + +  R        IP RL 
Sbjct: 123 IIDEVHMLSTGAFNALLKTLEEPPSHVIFILATTEPDKLPDTILSRCQRFDFKRIPTRL- 181

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
                 +   + R    +G+ + D+    IA+   G+ R A  LL +   + E      I
Sbjct: 182 ------IAQNLDRICNDSGIKIEDKGLKTIALYGNGSMRDAISLLEQCISYKE----GFI 231

Query: 242 TREIADAALLRLAIDKMGFDQLD 264
           T E     +L +A D+M F  LD
Sbjct: 232 TYEDV-CEMLGVANDEMLFSLLD 253


>gi|240102067|ref|YP_002958375.1| moxR-type AAA ATPase, putative chaperone protein (moxR)
           [Thermococcus gammatolerans EJ3]
 gi|239909620|gb|ACS32511.1| moxR-type AAA ATPase, putative chaperone protein (moxR)
           [Thermococcus gammatolerans EJ3]
          Length = 309

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 87/199 (43%), Gaps = 45/199 (22%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKAGDLAALLTNLED--------- 105
           H+L  G PGL KTTL++  A+ L + F R    P +  A  +     ++           
Sbjct: 36  HILLEGVPGLAKTTLSKNFAKSLNLAFTRVQMTPDLLPADIIGHSFYDMRTGEFKIRKGP 95

Query: 106 --RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
              ++L +DEI+R S   +  L  AME+ Q+ +   EG + R     L R  L+ AT   
Sbjct: 96  IFTNILLVDEINRASPKTQSALLEAMEEKQVTI---EGQTFR-----LPRPFLVIAT--- 144

Query: 164 GLLTNPLQ------------DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEI 211
               NP++            DRF + I++++      K +++R      L + DEA   +
Sbjct: 145 ---RNPVEIEGVYDIPTAQADRFMMEIKVSYLSENHEKEMLRR----KNLGLFDEAKPVV 197

Query: 212 AMRSRGTPRIAGRLLRRVR 230
              S+G    A + +R V+
Sbjct: 198 ---SKGELEKAAKEVRGVK 213


>gi|238026975|ref|YP_002911206.1| ATP-dependent protease La [Burkholderia glumae BGR1]
 gi|237876169|gb|ACR28502.1| ATP-dependent protease La [Burkholderia glumae BGR1]
          Length = 805

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 104/253 (41%), Gaps = 50/253 (19%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           +  VGPPG+GKT+L Q +AR     F R   G V  +A              G +   LT
Sbjct: 354 LCLVGPPGVGKTSLGQSIARATNRKFVRMALGGVRDEAEIRGHRRTYIGSMPGKILQSLT 413

Query: 102 NLEDRDVLF-IDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152
            +  R+ LF +DE+ ++        S  + E+L P       D  V        V  +LS
Sbjct: 414 KVGVRNPLFLLDEVDKMGMDFRGDPSSALLEVLDPEQNHTFADHYV-------EVDFDLS 466

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR-----GAKLTGLAVTDEA 207
               +A +  +  +  PL DR  + IRL+ Y  ++  +I QR       K  GL   + A
Sbjct: 467 DVMFVATSNSLN-IPPPLLDRMEV-IRLSGYTEDEKVSIAQRYLLPKQKKNNGLKDGEIA 524

Query: 208 ACEIAMRS--RGTPRIAG-RLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLD 264
             E A+R   R   R AG R L R            I R++    LL+ A   +  D  +
Sbjct: 525 VSEEAIRDIIRYYTREAGVRSLER--------EVSKICRKVVKMLLLKKAASPVKVDAGN 576

Query: 265 L-RYLTMIARNFG 276
           L  +L +   +FG
Sbjct: 577 LDTFLGVRKYDFG 589


>gi|225026759|ref|ZP_03715951.1| hypothetical protein EUBHAL_01011 [Eubacterium hallii DSM 3353]
 gi|224955878|gb|EEG37087.1| hypothetical protein EUBHAL_01011 [Eubacterium hallii DSM 3353]
          Length = 604

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E  V F S SG    +      A  +  L    +++   +
Sbjct: 202 VLLVGPPGTGKTMLAKAVAGEANVPFFSISGSEFVEMFVGMGASKVRDLFKQAKEKAPCI 261

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 262 VFIDEI 267


>gi|224111036|ref|XP_002332995.1| predicted protein [Populus trichocarpa]
 gi|222834384|gb|EEE72861.1| predicted protein [Populus trichocarpa]
          Length = 472

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
          VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 46 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 76


>gi|242024266|ref|XP_002432549.1| Replication factor C subunit, putative [Pediculus humanus
          corporis]
 gi|212518009|gb|EEB19811.1| Replication factor C subunit, putative [Pediculus humanus
          corporis]
          Length = 360

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+T+++   QVE  S L+  ++ A      L ++LF GPPG GKT+     AR+L
Sbjct: 42 RPKTVDDIVEQVEVVSVLRQTLKGAD-----LPNLLFYGPPGTGKTSTILAAARQL 92


>gi|196006672|ref|XP_002113202.1| hypothetical protein TRIADDRAFT_11565 [Trichoplax adhaerens]
 gi|190583606|gb|EDV23676.1| hypothetical protein TRIADDRAFT_11565 [Trichoplax adhaerens]
          Length = 526

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 16/32 (50%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT +A+ +A E G+NF +  GP
Sbjct: 337 LLLAGPPGCGKTLIAKAIANESGLNFIAVKGP 368


>gi|196011678|ref|XP_002115702.1| conserved hypothetical protein [Trichoplax adhaerens]
 gi|190581478|gb|EDV21554.1| conserved hypothetical protein [Trichoplax adhaerens]
          Length = 456

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 27/50 (54%)

Query: 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
            GQ +A     + +E  K+R  A   VL  GPPG GKT LA  VA ELG
Sbjct: 39 LVGQEKAREAAGIIVELIKSRKMAGRAVLLAGPPGTGKTALALAVAHELG 88


>gi|190346315|gb|EDK38368.2| hypothetical protein PGUG_02466 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 819

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL  GPPG GKTT+A  +A EL V F + S P +    +G+    L  + D        +
Sbjct: 224 VLLYGPPGCGKTTIANALAGELKVPFLNISAPSVVSGMSGESEKKLREIFDEAKSLAPCL 283

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 284 VFIDEIDAIT 293



 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 546 VLMWGPPGCGKTLLAKAVANESRANFISIKGP 577


>gi|88602110|ref|YP_502288.1| AAA family ATPase, CDC48 subfamily protein [Methanospirillum
           hungatei JF-1]
 gi|88187572|gb|ABD40569.1| AAA family ATPase, CDC48 subfamily [Methanospirillum hungatei JF-1]
          Length = 801

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 56/123 (45%), Gaps = 29/123 (23%)

Query: 6   GLLSRNVS--QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           G LSR +S  +E  +I L  PR  E            ++ I++ K        VL  GPP
Sbjct: 185 GGLSREISLIREMVEIPLRYPRIFE------------RLGIDSPKG-------VLLYGPP 225

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DVLFIDEIH 115
           G GKT LA+ VA E+  +F   SGP +     GD    +  + +        ++FIDEI 
Sbjct: 226 GTGKTLLARAVASEVDAHFIPLSGPEVMSRYYGDSEKKIREIFEEARQKAPSIIFIDEID 285

Query: 116 RLS 118
            ++
Sbjct: 286 SIA 288



 Score = 38.1 bits (87), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 17/32 (53%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT LA+ VA +  +NF S  GP
Sbjct: 491 ILLFGPPGTGKTLLAKAVAAKSRMNFISVKGP 522


>gi|88658550|ref|YP_507694.1| ATP-dependent protease ATP-binding subunit [Ehrlichia chaffeensis
           str. Arkansas]
 gi|123492907|sp|Q2GFT9|CLPX_EHRCR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|88600007|gb|ABD45476.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ehrlichia
           chaffeensis str. Arkansas]
          Length = 406

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 18/95 (18%)

Query: 38  SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG--- 94
           SNL V  E   +++    +VL +GP G GKT LA+ +AR L V F       + +AG   
Sbjct: 94  SNLSVISEVEISKS----NVLLIGPTGSGKTLLARTLARVLQVPFAMADATTLTEAGYVG 149

Query: 95  -DLAALLTNL----------EDRDVLFIDEIHRLS 118
            D+  +L  L            R +++IDE+ ++S
Sbjct: 150 EDVENILLKLLQAANFNVDAAQRGIIYIDEVDKIS 184


>gi|55820660|ref|YP_139102.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           thermophilus LMG 18311]
 gi|55822551|ref|YP_140992.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           thermophilus CNRZ1066]
 gi|81820326|sp|Q5M0S4|CLPX_STRT1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|81820490|sp|Q5M5B0|CLPX_STRT2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|55736645|gb|AAV60287.1| ATP-dependent Clp protease subunit X [Streptococcus thermophilus
           LMG 18311]
 gi|55738536|gb|AAV62177.1| ATP-dependent Clp protease subunit X [Streptococcus thermophilus
           CNRZ1066]
 gi|312277987|gb|ADQ62644.1| ATP-dependent Clp protease ATP-binding subunit clpX [Streptococcus
           thermophilus ND03]
          Length = 408

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +AR L V F       + +AG    D+  +L  L        
Sbjct: 112 NILMIGPTGSGKTYLAQTLARSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADFNI 171

Query: 104 --EDRDVLFIDEIHRLS 118
              +R ++++DEI +++
Sbjct: 172 ERAERGIIYVDEIDKIA 188


>gi|103488220|ref|YP_617781.1| ATP-dependent protease ATP-binding subunit ClpX [Sphingopyxis
           alaskensis RB2256]
 gi|123379515|sp|Q1GPH4|CLPX_SPHAL RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|98978297|gb|ABF54448.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sphingopyxis
           alaskensis RB2256]
          Length = 423

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L VGP G GKT LAQ +AR L V F       + +AG +   + N+         
Sbjct: 111 AKSNILLVGPTGSGKTLLAQTLARFLDVPFTMADATTLTEAGYVGEDVENIILKLLQSSD 170

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDEI ++S
Sbjct: 171 YNVEKAQRGIVYIDEIDKIS 190


>gi|323144628|ref|ZP_08079216.1| endopeptidase La [Succinatimonas hippei YIT 12066]
 gi|322415637|gb|EFY06383.1| endopeptidase La [Succinatimonas hippei YIT 12066]
          Length = 859

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 67/151 (44%), Gaps = 32/151 (21%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVN-FRSTSGPVIAKA--------------GDLAALLT 101
           +LFVGPPG+GKT++ + +A+ L    FR + G V  ++              G +   L 
Sbjct: 399 MLFVGPPGVGKTSIGKSIAKALNRPFFRLSLGGVDDESVIKGHRKTYIGSMPGKMVQALR 458

Query: 102 NLEDRD-VLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152
             +  + V+ +DEI +L        S  + E L P   +  LD  + E       K++LS
Sbjct: 459 ETKVMNPVIMLDEIDKLGRSYQGDPSAALLETLDPEQNNNFLDHYLDE-------KLDLS 511

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
               I     V  +  PL DR   PIRL+ Y
Sbjct: 512 NCLFICTANTVESIPEPLLDRMD-PIRLSGY 541


>gi|322385235|ref|ZP_08058882.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           cristatus ATCC 51100]
 gi|321270859|gb|EFX53772.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           cristatus ATCC 51100]
          Length = 409

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +AR L V F       + +AG    D+  +L  L        
Sbjct: 113 NILMIGPTGSGKTFLAQTLARSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNI 172

Query: 104 --EDRDVLFIDEIHRLS 118
              +R ++++DEI +++
Sbjct: 173 ERAERGIIYVDEIDKIA 189


>gi|319898777|ref|YP_004158870.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bartonella
           clarridgeiae 73]
 gi|319402741|emb|CBI76288.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bartonella
           clarridgeiae 73]
          Length = 398

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L VGP G GKT LAQ +AR + V F       + +AG +   + N+         
Sbjct: 86  AKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQSAD 145

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDE+ ++S
Sbjct: 146 YNVERAQRGIVYIDEVDKIS 165


>gi|303234817|ref|ZP_07321442.1| putative Cell division protease FtsH [Finegoldia magna BVS033A4]
 gi|302493935|gb|EFL53716.1| putative Cell division protease FtsH [Finegoldia magna BVS033A4]
          Length = 628

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LAQ VA E  V F S SG
Sbjct: 199 VLLVGPPGTGKTLLAQAVAGEAKVPFFSMSG 229


>gi|296876431|ref|ZP_06900483.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           parasanguinis ATCC 15912]
 gi|312866721|ref|ZP_07726935.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           parasanguinis F0405]
 gi|296432721|gb|EFH18516.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           parasanguinis ATCC 15912]
 gi|311097802|gb|EFQ56032.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           parasanguinis F0405]
          Length = 410

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +AR L V F       + +AG    D+  +L  L        
Sbjct: 114 NILMIGPTGSGKTFLAQTLARSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNI 173

Query: 104 --EDRDVLFIDEIHRLS 118
              +R ++++DEI +++
Sbjct: 174 ERAERGIIYVDEIDKIA 190


>gi|282899237|ref|ZP_06307210.1| Peptidase M41, FtsH [Cylindrospermopsis raciborskii CS-505]
 gi|281195873|gb|EFA70797.1| Peptidase M41, FtsH [Cylindrospermopsis raciborskii CS-505]
          Length = 645

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 210 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 240


>gi|254719173|ref|ZP_05180984.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella sp.
           83/13]
 gi|265984169|ref|ZP_06096904.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella sp.
           83/13]
 gi|306838165|ref|ZP_07471021.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella sp.
           NF 2653]
 gi|264662761|gb|EEZ33022.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella sp.
           83/13]
 gi|306406755|gb|EFM62978.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella sp.
           NF 2653]
          Length = 424

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L VGP G GKT LAQ +AR + V F       + +AG +   + N+         
Sbjct: 112 AKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 171

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDE+ ++S
Sbjct: 172 YNVERAQRGIVYIDEVDKIS 191


>gi|257792624|ref|YP_003183230.1| ATP-dependent metalloprotease FtsH [Eggerthella lenta DSM 2243]
 gi|257476521|gb|ACV56841.1| ATP-dependent metalloprotease FtsH [Eggerthella lenta DSM 2243]
          Length = 750

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
            L VGPPG GKT LA+ VA E GV F S SG       V   A  +  L    +D    +
Sbjct: 253 CLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFQQAKDASPAI 312

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 313 IFIDEI 318


>gi|213966172|ref|ZP_03394358.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Corynebacterium amycolatum SK46]
 gi|213951187|gb|EEB62583.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Corynebacterium amycolatum SK46]
          Length = 443

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LAQ +AR+L V F       + +AG +   + N+            
Sbjct: 138 NILLLGPTGCGKTYLAQTLARKLDVPFAIADATSLTEAGYVGEDVENILLKLLQATDFDV 197

Query: 104 --EDRDVLFIDEIHRLS 118
               R ++++DEI ++S
Sbjct: 198 EKAQRGIIYVDEIDKIS 214


>gi|125717923|ref|YP_001035056.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           sanguinis SK36]
 gi|323351645|ref|ZP_08087299.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           sanguinis VMC66]
 gi|166215215|sp|A3CMV1|CLPX_STRSV RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|125497840|gb|ABN44506.1| ATP-dependent Clp protease ATP-binding subunit clpX, putative
           [Streptococcus sanguinis SK36]
 gi|322122131|gb|EFX93857.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           sanguinis VMC66]
 gi|324991227|gb|EGC23161.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           sanguinis SK353]
 gi|324992983|gb|EGC24903.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           sanguinis SK405]
 gi|324995708|gb|EGC27620.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           sanguinis SK678]
 gi|325687395|gb|EGD29416.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           sanguinis SK72]
 gi|325689773|gb|EGD31777.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           sanguinis SK115]
 gi|325694581|gb|EGD36490.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           sanguinis SK150]
 gi|325696427|gb|EGD38317.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           sanguinis SK160]
 gi|327462279|gb|EGF08606.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           sanguinis SK1]
 gi|327470116|gb|EGF15580.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           sanguinis SK330]
 gi|327489632|gb|EGF21424.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           sanguinis SK1058]
 gi|328946144|gb|EGG40289.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           sanguinis SK1087]
 gi|332361329|gb|EGJ39133.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           sanguinis SK1056]
          Length = 409

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +AR L V F       + +AG    D+  +L  L        
Sbjct: 113 NILMIGPTGSGKTFLAQTLARSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNI 172

Query: 104 --EDRDVLFIDEIHRLS 118
              +R ++++DEI +++
Sbjct: 173 ERAERGIIYVDEIDKIA 189


>gi|152995750|ref|YP_001340585.1| ATP-dependent protease ATP-binding subunit ClpX [Marinomonas sp.
           MWYL1]
 gi|226706592|sp|A6VW21|CLPX_MARMS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|150836674|gb|ABR70650.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Marinomonas
           sp. MWYL1]
          Length = 426

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104
           ++L +GP G GKT LAQ +AR L V F       + +AG +          LL N +   
Sbjct: 119 NILLIGPTGSGKTLLAQTLARVLDVPFTIADATTLTEAGYVGEDVENIIQKLLQNCDYDV 178

Query: 105 ---DRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 179 EKAQRGIVYIDEIDKIS 195


>gi|63086953|emb|CAI72282.1| Lon protease, putative [Phytophthora infestans]
          Length = 930

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 46/197 (23%), Positives = 85/197 (43%), Gaps = 33/197 (16%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLA 71
           ++E+ D++  +    E+  G  +    +  FI  +K + +    ++ FVGPPG+GKT++ 
Sbjct: 416 TEENFDLAKAKQILDEDHYGLKDIKERILEFIAVSKLKGDVQGKIICFVGPPGVGKTSIG 475

Query: 72  QVVARELGVNFRSTS---------------GPVIAKAGDLAALLTNLEDRD-VLFIDEIH 115
           + +AR L   F   S                 V A  G +   L + +  + ++ IDEI 
Sbjct: 476 KSIARSLNREFYRFSVGGLSDVAEIKGHRRTYVGAMPGKIIQCLKSTQSSNPLILIDEID 535

Query: 116 RL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           +L        +  + E+L P+     +D  +        V ++LSR   I        + 
Sbjct: 536 KLGRGYQGDPASALLELLDPSQNSGFVDHYM-------DVPVDLSRVLFICTANVTDTIP 588

Query: 168 NPLQDRFGIPIRLNFYE 184
            PL DR  + +RL+ Y+
Sbjct: 589 GPLLDRMEV-LRLSGYD 604


>gi|76818320|ref|YP_335233.1| FtsH-2 protease [Burkholderia pseudomallei 1710b]
 gi|76582793|gb|ABA52267.1| FtsH-2 protease [Burkholderia pseudomallei 1710b]
          Length = 917

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 8/72 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL VG PG GKT LA+ VA E GV F STSG    +   G  AA + +L ++       +
Sbjct: 457 VLIVGAPGTGKTLLAKAVAGEAGVPFFSTSGSSFVEMFVGVGAARVRDLFEQAQQKAPCI 516

Query: 109 LFIDEIHRLSII 120
           +FIDE+  L  +
Sbjct: 517 IFIDELDALGKV 528


>gi|77460800|ref|YP_350307.1| PIM1 peptidase [Pseudomonas fluorescens Pf0-1]
 gi|77384803|gb|ABA76316.1| ATP dependent PIM1 peptidase. Serine peptidase. MEROPS family S16
           [Pseudomonas fluorescens Pf0-1]
          Length = 807

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 70/166 (42%), Gaps = 40/166 (24%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAKAGDLAALLT 101
           VL VGPPG+GKT++ + +A  LG  F   S                 + A+ G L   L 
Sbjct: 389 VLLVGPPGVGKTSVGKSIAESLGRPFYRFSLGGMRDEAEIKGHRRTYIGAQPGKLVQALK 448

Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAME----DFQLDLMVGEGPSARSVK 148
           ++E  + V+ +DEI ++    +        E L P       D  LDL           +
Sbjct: 449 DVEVMNPVIMLDEIDKMGQSYQGDPASALLETLDPEQNVEFLDHYLDL-----------R 497

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           ++LS+   +     +  +  PL DR  + IRL+ Y  E+   I +R
Sbjct: 498 MDLSKVLFVCTANTLDSIPGPLLDRMEV-IRLSGYITEEKVAIAKR 542


>gi|83311890|ref|YP_422154.1| ATP-dependent protease ATP-binding subunit ClpX [Magnetospirillum
           magneticum AMB-1]
 gi|123541533|sp|Q2W3I0|CLPX_MAGSA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|82946731|dbj|BAE51595.1| ATP-dependent protease Clp [Magnetospirillum magneticum AMB-1]
          Length = 421

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+         
Sbjct: 110 AKSNILLIGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAAE 169

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDE+ ++S
Sbjct: 170 YNVERAQRGIVYIDEVDKIS 189


>gi|38234566|ref|NP_940333.1| cell division protein [Corynebacterium diphtheriae NCTC 13129]
 gi|38200829|emb|CAE50533.1| Cell division protein [Corynebacterium diphtheriae]
          Length = 824

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 32/70 (45%), Positives = 35/70 (50%), Gaps = 9/70 (12%)

Query: 26  TLEEFTGQVEACSNL---KVFIEAAKARAEALDH-----VLFVGPPGLGKTTLAQVVARE 77
           T  +  G  EA   L   K F+E    R EAL       VL  GPPG GKT LA+ VA E
Sbjct: 168 TFADVAGADEAIDELHEIKDFLEDP-TRYEALGAKIPRGVLLYGPPGTGKTLLARAVAGE 226

Query: 78  LGVNFRSTSG 87
            GV F S SG
Sbjct: 227 AGVPFYSISG 236


>gi|58266798|ref|XP_570555.1| hypothetical protein [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|134110284|ref|XP_776198.1| hypothetical protein CNBD0190 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50258868|gb|EAL21551.1| hypothetical protein CNBD0190 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57226788|gb|AAW43248.1| conserved hypothetical protein [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 1076

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  G PG GKT LA  VA+E G+NF S  GP I
Sbjct: 712 LLLYGYPGCGKTLLASAVAKECGLNFISVKGPEI 745


>gi|332366632|gb|EGJ44375.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           sanguinis SK1059]
          Length = 409

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +AR L V F       + +AG    D+  +L  L        
Sbjct: 113 NILMIGPTGSGKTFLAQTLARSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNI 172

Query: 104 --EDRDVLFIDEIHRLS 118
              +R ++++DEI +++
Sbjct: 173 ERAERGIIYVDEIDKIA 189


>gi|332291098|ref|YP_004429707.1| AAA ATPase [Krokinobacter diaphorus 4H-3-7-5]
 gi|332169184|gb|AEE18439.1| AAA ATPase [Krokinobacter diaphorus 4H-3-7-5]
          Length = 1625

 Score = 40.8 bits (94), Expect = 0.27,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 25/42 (59%)

Query: 50   RAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA 91
            R + +  +L + PPG GKTTL + +A  LG+ F   +GP I 
Sbjct: 1257 RTDRMGMLLLISPPGYGKTTLMEYIANRLGLVFVKINGPAIG 1298


>gi|329939451|ref|ZP_08288787.1| cell division protein ftsH-like protein [Streptomyces
           griseoaurantiacus M045]
 gi|329301680|gb|EGG45574.1| cell division protein ftsH-like protein [Streptomyces
           griseoaurantiacus M045]
          Length = 676

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 4/58 (6%)

Query: 34  VEACSNLKVFI-EAAKARA---EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VE    +K F+ E AK +A   +    VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 178 VEELHEIKEFLQEPAKFQAVGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISG 235


>gi|327350812|gb|EGE79669.1| ribosome biogenesis ATPase RIX7 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 725

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 34/72 (47%), Gaps = 3/72 (4%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           ADI  L     E  T  VE   N  ++   A+    A   VL  GPPG GKT LA+ VA 
Sbjct: 464 ADIGALGGIRDELATAIVEPIRNPDIY---ARVGITAPTGVLLWGPPGCGKTLLAKAVAN 520

Query: 77  ELGVNFRSTSGP 88
           E   NF S  GP
Sbjct: 521 ESRANFISVKGP 532



 Score = 39.3 bits (90), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL  GPPG GKT +A   A ELGV F + S P I    +G+    L    D        +
Sbjct: 214 VLLHGPPGCGKTMIANAFAAELGVPFIAISAPSIVSGMSGESEKALREHFDEAKKVAPCL 273

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 274 IFIDEIDAIT 283


>gi|326795824|ref|YP_004313644.1| ATP-dependent Clp protease ATP-binding subunit clpX [Marinomonas
           mediterranea MMB-1]
 gi|326546588|gb|ADZ91808.1| ATP-dependent Clp protease ATP-binding subunit clpX [Marinomonas
           mediterranea MMB-1]
          Length = 427

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104
           ++L +GP G GKT LAQ +AR L V F       + +AG +          LL N +   
Sbjct: 119 NILLIGPTGSGKTLLAQTLARVLDVPFTIADATTLTEAGYVGEDVENIIQKLLQNCDYDV 178

Query: 105 ---DRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 179 EKAQRGIVYIDEIDKIS 195


>gi|320094885|ref|ZP_08026621.1| DNA polymerase III, gamma/tau subunit DnaX [Actinomyces sp. oral
          taxon 178 str. F0338]
 gi|319978181|gb|EFW09788.1| DNA polymerase III, gamma/tau subunit DnaX [Actinomyces sp. oral
          taxon 178 str. F0338]
          Length = 407

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 36/78 (46%), Gaps = 10/78 (12%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
          RP T +E  GQ      LK     A  RA  + H  LF GP G GKTT A+++AR L   
Sbjct: 6  RPDTFDEVIGQEHVTEPLK-----AALRANRVTHAYLFSGPRGCGKTTSARILARCL--- 57

Query: 82 FRSTSGPVIAKAGDLAAL 99
               GP  A  G  A+ 
Sbjct: 58 -NCAQGPTDAPCGQCASC 74


>gi|302544353|ref|ZP_07296695.1| putative cell division protein [Streptomyces hygroscopicus ATCC
           53653]
 gi|302461971|gb|EFL25064.1| putative cell division protein [Streptomyces himastatinicus ATCC
           53653]
          Length = 669

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 4/58 (6%)

Query: 34  VEACSNLKVFI-EAAKARA---EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VE    +K F+ E AK +A   +    VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 171 VEELQEIKEFLQEPAKFQAVGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISG 228


>gi|292491478|ref|YP_003526917.1| ATP-dependent protease La [Nitrosococcus halophilus Nc4]
 gi|291580073|gb|ADE14530.1| ATP-dependent protease La [Nitrosococcus halophilus Nc4]
          Length = 779

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 101/251 (40%), Gaps = 59/251 (23%)

Query: 48  KARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA---GDLAALLTN 102
           K   EA   +L FVGPPG+GKT++ Q +AR LG  F R + G +  +A   G     +  
Sbjct: 338 KLNPEAKSPILCFVGPPGVGKTSVGQSIARALGRKFERMSLGGLHDEAELRGHRRTYIGA 397

Query: 103 LEDR------------DVLFIDEIHRL--------SIIVEEILYPA----MEDFQLDLMV 138
           +  R             +L +DEI +L        +  + E+L PA      D  LDL  
Sbjct: 398 MPGRIIRAIRRAGYKNPLLMLDEIDKLGRDFRGDPAAALLEVLDPAQNVEFHDNYLDL-- 455

Query: 139 GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR---- 194
                      +LS+   +     +  +  PL DR  + +RL  Y  E+ + I +R    
Sbjct: 456 ---------PFDLSKVFFVTTANTLDTIPRPLLDRMEV-LRLPGYSDEEKQQIARRYLIG 505

Query: 195 ------GAKLTGLAVTDEAACEIAMRS------RGTPRIAGRLLRRVRDFAEVAHAKTIT 242
                 G     L++ DE    +  R       R   R+ GR+ R+V    +VA  +T  
Sbjct: 506 RQIGEAGLSEIQLSIPDETLRYVIRRYTREAGVRELERVLGRIARKV--ATQVAEGQTQP 563

Query: 243 REIADAALLRL 253
             +    L+ L
Sbjct: 564 MTVKPKKLVEL 574


>gi|302532878|ref|ZP_07285220.1| ATPase central domain-containing protein [Streptomyces sp. C]
 gi|302441773|gb|EFL13589.1| ATPase central domain-containing protein [Streptomyces sp. C]
          Length = 429

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 8/78 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALL-------TNLEDRDVL 109
           +   GPPG GKTT A+ +A  LG  F       +A  G+LAA L         LE R ++
Sbjct: 198 ITLFGPPGTGKTTFARAIASRLGWPFVELLPSRLADEGNLAAALRVAFARIAELE-RVLV 256

Query: 110 FIDEIHRLSIIVEEILYP 127
           FIDE+  ++ +  E   P
Sbjct: 257 FIDEVEEIAPVRTEPAQP 274


>gi|225450599|ref|XP_002277956.1| PREDICTED: similar to putative LON3 protease [Vitis vinifera]
          Length = 978

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 79/191 (41%), Gaps = 32/191 (16%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV-GPPGLGKTT 69
           N S E+ D+   +    E+  G  +    +  FI   K R  +   ++ + GPPG+GKT+
Sbjct: 416 NYSDENFDVMQAQQILDEDHYGLTDVKERILEFIAVGKLRGSSQGKIICLSGPPGVGKTS 475

Query: 70  LAQVVARELGVN-FRSTSGPVI--------------AKAGDLAALLTNLEDRDVL-FIDE 113
           + + +AR L    FR + G +               A  G +   L N+   + L  IDE
Sbjct: 476 IGRSIARALNRKFFRFSVGGLADVAEIKGHRRTYIGAMPGKMVQCLKNVGTANPLVLIDE 535

Query: 114 IHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
           I +L        +  + E+L P      LD  +        V I+LS+   +     V +
Sbjct: 536 IDKLGKGHAGDPASALLELLDPEQNANFLDHYL-------DVPIDLSKVLFVCTANIVEM 588

Query: 166 LTNPLQDRFGI 176
           + NPL DR  +
Sbjct: 589 IPNPLLDRMEV 599


>gi|225016527|ref|ZP_03705719.1| hypothetical protein CLOSTMETH_00433 [Clostridium methylpentosum
           DSM 5476]
 gi|224950756|gb|EEG31965.1| hypothetical protein CLOSTMETH_00433 [Clostridium methylpentosum
           DSM 5476]
          Length = 662

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL +GPPG GKT LA+ VA E GV F S SG
Sbjct: 213 VLLIGPPGTGKTLLARAVAGEAGVPFFSISG 243


>gi|28871352|ref|NP_793971.1| ATP-dependent protease La [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213971112|ref|ZP_03399231.1| ATP-dependent protease La [Pseudomonas syringae pv. tomato T1]
 gi|301381871|ref|ZP_07230289.1| ATP-dependent protease La [Pseudomonas syringae pv. tomato Max13]
 gi|302132839|ref|ZP_07258829.1| ATP-dependent protease La [Pseudomonas syringae pv. tomato NCPPB
           1108]
 gi|28854603|gb|AAO57666.1| ATP-dependent protease La [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213924101|gb|EEB57677.1| ATP-dependent protease La [Pseudomonas syringae pv. tomato T1]
 gi|330877428|gb|EGH11577.1| ATP-dependent protease La [Pseudomonas syringae pv. morsprunorum
           str. M302280PT]
 gi|331015609|gb|EGH95665.1| ATP-dependent protease La [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 805

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 87/215 (40%), Gaps = 53/215 (24%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAKAGDLAALLT 101
           VL VGPPG+GKT++ + +A  LG  F   S                 + A+ G L   L 
Sbjct: 387 VLLVGPPGVGKTSVGRSIAESLGRPFYRLSVGGMRDEAEIKGHRRTYIGAQPGKLVQALK 446

Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAME----DFQLDLMVGEGPSARSVK 148
           ++E  + V+ +DEI ++    +        E L P       D  LDL           +
Sbjct: 447 DVEVMNPVIMLDEIDKMGQSYQGDPASALLETLDPEQNVEFLDHYLDL-----------R 495

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR----------GAKL 198
           ++LS+   +     +  +  PL DR  + IRL+ Y  E+   I +R          G   
Sbjct: 496 LDLSKVLFVCTANTLDSIPGPLLDRMEV-IRLSGYITEEKLAIAKRHLWPKQLAKAGVAK 554

Query: 199 TGLAVTD---EAACEIAMRSRGTPRIAGRLLRRVR 230
           + L+++D    A  E   R  G   +  +L + VR
Sbjct: 555 SKLSISDTALRAVIEGYAREAGVRHLEKQLGKLVR 589


>gi|72072160|ref|XP_787339.1| PREDICTED: similar to replication factor C p37 subunit
          [Strongylocentrotus purpuratus]
 gi|115929579|ref|XP_001178763.1| PREDICTED: similar to replication factor C p37 subunit
          [Strongylocentrotus purpuratus]
          Length = 355

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 5/60 (8%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          +   RPRT++E   Q E  + LK  ++ A      L ++LF GPPG GKT+     +REL
Sbjct: 31 VEKYRPRTVDEVAYQDEVVAVLKKSLQGAD-----LPNMLFYGPPGTGKTSTILAASREL 85


>gi|320530149|ref|ZP_08031219.1| ATP-dependent metallopeptidase HflB [Selenomonas artemidis F0399]
 gi|320137582|gb|EFW29494.1| ATP-dependent metallopeptidase HflB [Selenomonas artemidis F0399]
          Length = 651

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL  GPPG GKT LA+ VA E GV F + SG    +   G  A+ + +L D+       +
Sbjct: 183 VLLFGPPGTGKTLLAKAVAGEAGVQFFTISGSDFVEMFVGVGASRVRDLFDQAKKAAPCI 242

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 243 VFIDEI 248


>gi|313894780|ref|ZP_07828340.1| ATP-dependent metallopeptidase HflB [Selenomonas sp. oral taxon 137
           str. F0430]
 gi|312976461|gb|EFR41916.1| ATP-dependent metallopeptidase HflB [Selenomonas sp. oral taxon 137
           str. F0430]
          Length = 665

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL  GPPG GKT LA+ VA E GV F + SG    +   G  A+ + +L D+       +
Sbjct: 197 VLLFGPPGTGKTLLAKAVAGEAGVQFFTISGSDFVEMFVGVGASRVRDLFDQAKKAAPCI 256

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 257 VFIDEI 262


>gi|291400267|ref|XP_002716498.1| PREDICTED: replication factor C 4 [Oryctolagus cuniculus]
          Length = 364

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+ ++E   Q E  S LK  +E A      L ++LF GPPG GKT+     AREL
Sbjct: 45 RPKCVDEVAFQEEVVSVLKKSLEGAD-----LPNLLFYGPPGTGKTSTILAAAREL 95


>gi|317133440|ref|YP_004092754.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Ethanoligenens harbinense YUAN-3]
 gi|315471419|gb|ADU28023.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Ethanoligenens harbinense YUAN-3]
          Length = 436

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 68/147 (46%), Gaps = 29/147 (19%)

Query: 1   MMDREGLLSR-NVSQEDADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKAR---A 51
           +++ E +++   ++ +D  I+L RP+ + E       GQ +A   L V +     R    
Sbjct: 44  ILEDENVIAHPQITGDDTAITLPRPKEINEILDQYVVGQEDAKVALSVAVYNHYKRIYYG 103

Query: 52  EALD------HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-- 103
           E  D      ++L +GP G+GKT LAQ +A  L V F       + +AG +   + N+  
Sbjct: 104 ETSDVDLQKSNILLLGPTGVGKTMLAQTLAHILKVPFAIADATTLTEAGYVGEDVENILL 163

Query: 104 -----EDRDV-------LFIDEIHRLS 118
                 D DV       ++IDEI +++
Sbjct: 164 RLIQAADYDVERAEHGIIYIDEIDKIA 190


>gi|302870328|ref|YP_003838965.1| ATP-dependent metalloprotease FtsH [Micromonospora aurantiaca ATCC
           27029]
 gi|315503395|ref|YP_004082282.1| ATP-dependent metalloprotease ftsh [Micromonospora sp. L5]
 gi|302573187|gb|ADL49389.1| ATP-dependent metalloprotease FtsH [Micromonospora aurantiaca ATCC
           27029]
 gi|315410014|gb|ADU08131.1| ATP-dependent metalloprotease FtsH [Micromonospora sp. L5]
          Length = 670

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 33/59 (55%), Gaps = 6/59 (10%)

Query: 34  VEACSNLKVFIEAAKARAEAL-----DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VE    +K F++   A+ +AL       VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 182 VEELHEIKDFLQNP-AKYQALGAKIPKGVLLFGPPGTGKTLLARAVAGEAGVPFYSISG 239


>gi|256073723|ref|XP_002573178.1| 26S protease regulatory subunit S10b [Schistosoma mansoni]
 gi|238658352|emb|CAZ29410.1| 26S protease regulatory subunit S10b, putative [Schistosoma
           mansoni]
          Length = 395

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRS--TSGPVIAKAGDLAALLTNLED--RD----V 108
            L  GPPG GKT LA+ VA +L VNF    +SG V    G+ A L+  + +  RD    +
Sbjct: 176 CLLYGPPGTGKTLLARAVASQLDVNFLKVVSSGIVDKYIGESARLIREMFNYARDHQPCI 235

Query: 109 LFIDEI 114
           +F+DEI
Sbjct: 236 IFMDEI 241


>gi|237748251|ref|ZP_04578731.1| ftsH protein [Oxalobacter formigenes OXCC13]
 gi|229379613|gb|EEO29704.1| ftsH protein [Oxalobacter formigenes OXCC13]
          Length = 650

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           +L VGPPG GKT LA+ VA E GV F S +G    +   G  AA + +L ++       +
Sbjct: 200 ILLVGPPGTGKTLLARAVAGEAGVPFFSINGSEFVEMFVGVGAARVRDLFEQARKQAPAI 259

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 260 IFIDEIDAL 268


>gi|254385393|ref|ZP_05000721.1| AAA ATPase [Streptomyces sp. Mg1]
 gi|194344266|gb|EDX25232.1| AAA ATPase [Streptomyces sp. Mg1]
          Length = 429

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 8/78 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALL-------TNLEDRDVL 109
           +   GPPG GKTT A+ +A  LG  F       +A  G+LAA L         LE R ++
Sbjct: 198 ITLFGPPGTGKTTFARAIASRLGWPFVELLPSRLADEGNLAAALRTAFARIAELE-RVLV 256

Query: 110 FIDEIHRLSIIVEEILYP 127
           FIDE+  ++ +  E   P
Sbjct: 257 FIDEVEEIAPVRTEPAQP 274


>gi|158522704|ref|YP_001530574.1| ATP-dependent protease ATP-binding subunit [Desulfococcus
           oleovorans Hxd3]
 gi|238686897|sp|A8ZXB8|CLPX_DESOH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|158511530|gb|ABW68497.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfococcus
           oleovorans Hxd3]
          Length = 417

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104
           ++L +GP G GKT LAQ +AR L V F       + +AG +         +LL N +   
Sbjct: 110 NILLIGPTGCGKTLLAQTLARFLNVPFTIADATTLTEAGYVGEDVENIILSLLQNADYDV 169

Query: 105 ---DRDVLFIDEIHRLS 118
               R ++++DEI +++
Sbjct: 170 EKAQRGIVYVDEIDKIA 186


>gi|119510340|ref|ZP_01629475.1| Peptidase M41, FtsH [Nodularia spumigena CCY9414]
 gi|119464977|gb|EAW45879.1| Peptidase M41, FtsH [Nodularia spumigena CCY9414]
          Length = 622

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL +GPPG GKT LA+ +A E GV F S SG       V   A  +  L    +D    +
Sbjct: 204 VLLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKDSAPCL 263

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 264 IFIDEI 269


>gi|8569089|gb|AAF76434.1|AC015445_1 Contains similarity to p60 katanin from Chlamydomonas reinhardtii
           gb|AF205377 and contains an AAA domain PF|00004
           [Arabidopsis thaliana]
          Length = 627

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           +L  GPPG GKT LA+ +A E G NF S +G  +     GD   L   L          +
Sbjct: 376 ILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFATKLAPVI 435

Query: 109 LFIDEIHRL 117
           +F+DEI  L
Sbjct: 436 IFVDEIDSL 444


>gi|15896449|ref|NP_349798.1| ATP-dependent Zn protease, FTSH [Clostridium acetobutylicum ATCC
           824]
 gi|15026273|gb|AAK81138.1|AE007816_2 ATP-dependent Zn protease, FTSH [Clostridium acetobutylicum ATCC
           824]
 gi|325510607|gb|ADZ22243.1| ATP-dependent Zn protease, FTSH [Clostridium acetobutylicum EA
           2018]
          Length = 602

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ V+ E GV F S SG
Sbjct: 196 VLLVGPPGTGKTLLAKAVSGEAGVPFFSISG 226


>gi|328768691|gb|EGF78737.1| hypothetical protein BATDEDRAFT_12969 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 645

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 70/162 (43%), Gaps = 32/162 (19%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTS-GPVIAKA----------GDLAALLTN--- 102
           +  VGPPG+GKT+L + +A  LG  F   S G +  +A          G L  L+     
Sbjct: 199 LCLVGPPGVGKTSLGKSIANALGRKFHRISLGGIHDEAEIRGHRRTYLGSLPGLIVQGLR 258

Query: 103 --LEDRDVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152
               +  VL +DEI +L        S  + E+L P       D  +G       V  NLS
Sbjct: 259 QCGVNNPVLLLDEIDKLGHDYRGDPSSALLEVLDPEQNSTFTDHYLG-------VPFNLS 311

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
               IA    +  +  PL DR  + ++++ Y +++  +I ++
Sbjct: 312 NVLFIATANDMDTIPAPLLDRMEV-VQISGYTVDEKLSIARQ 352


>gi|327460433|gb|EGF06770.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           sanguinis SK1057]
 gi|327474152|gb|EGF19562.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           sanguinis SK408]
 gi|332360699|gb|EGJ38508.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           sanguinis SK49]
 gi|332360755|gb|EGJ38563.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           sanguinis SK355]
          Length = 409

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +AR L V F       + +AG    D+  +L  L        
Sbjct: 113 NILMIGPTGSGKTFLAQTLARSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNI 172

Query: 104 --EDRDVLFIDEIHRLS 118
              +R ++++DEI +++
Sbjct: 173 ERAERGIIYVDEIDKIA 189


>gi|325832734|ref|ZP_08165497.1| ATP-dependent metallopeptidase HflB [Eggerthella sp. HGA1]
 gi|325485873|gb|EGC88334.1| ATP-dependent metallopeptidase HflB [Eggerthella sp. HGA1]
          Length = 750

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
            L VGPPG GKT LA+ VA E GV F S SG       V   A  +  L    +D    +
Sbjct: 253 CLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFQQAKDASPAI 312

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 313 IFIDEI 318


>gi|300710838|ref|YP_003736652.1| AAA family ATPase, CDC48 subfamily protein [Halalkalicoccus
           jeotgali B3]
 gi|299124521|gb|ADJ14860.1| AAA family ATPase, CDC48 subfamily protein [Halalkalicoccus
           jeotgali B3]
          Length = 757

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 23/34 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL  GPPG GKT +A+ VA E+  +F + SGP I
Sbjct: 231 VLLHGPPGTGKTLMAKAVANEIDASFHTISGPEI 264



 Score = 40.0 bits (92), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 20/37 (54%), Positives = 22/37 (59%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +A   VL  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 499 DAAKGVLLYGPPGTGKTLLAKAVANEAESNFISIKGP 535


>gi|294630627|ref|ZP_06709187.1| cell division protein [Streptomyces sp. e14]
 gi|292833960|gb|EFF92309.1| cell division protein [Streptomyces sp. e14]
          Length = 668

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 4/58 (6%)

Query: 34  VEACSNLKVFI-EAAKARA---EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VE    +K F+ E AK +A   +    VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 169 VEELHEIKEFLQEPAKFQAVGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISG 226


>gi|291520783|emb|CBK79076.1| ATP-dependent protease La [Coprococcus catus GD/7]
          Length = 779

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 93/210 (44%), Gaps = 42/210 (20%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           +  VGPPG GKT++A+ +AR L   + R + G V  +A              G +A+ L+
Sbjct: 349 LCLVGPPGTGKTSIARSIARALNKKYVRISLGGVHDEAEIRGHRRTYIGAMPGRIASGLS 408

Query: 102 NLEDRD-VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSA-----RSVKINLSRFT 155
           +   ++ V+ +DEI ++S   +   + A+    L+++  E  S        + ++LS   
Sbjct: 409 HAGVKNPVMLLDEIDKVSTDYKGDTFSAL----LEVLDSEQNSKFRDNYLELPLDLSDVL 464

Query: 156 LIAATTRVGLLTNPLQDRFGIPIRLNFY-EIEDL---------KTIVQRGAKLTGLAVTD 205
            IA    +  +  PL DR  I I +N Y + E L         K +   G K   L ++D
Sbjct: 465 FIATANSLSTIPRPLLDRMEI-IEINTYTQNEKLHIAKEHLIEKQMKANGIKAKQLTISD 523

Query: 206 EAACEIAMRS------RGTPRIAGRLLRRV 229
           +A  +I +        RG  R  G + R+ 
Sbjct: 524 KAIEDIILYYTRESGVRGLERCLGDICRKT 553


>gi|282918292|ref|ZP_06326032.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus
           C427]
 gi|282317858|gb|EFB48227.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus
           C427]
          Length = 697

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E G  F S SG       V   A  +  L  N +     +
Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEMFVGVGASRVRDLFDNAKKNAPCI 260

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 261 IFIDEI 266


>gi|260222836|emb|CBA32802.1| ATP-dependent Clp protease ATP-binding subunit clpX [Curvibacter
           putative symbiont of Hydra magnipapillata]
          Length = 421

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+         
Sbjct: 114 AKSNILLIGPTGSGKTLLAQTLARMLDVPFVMADATTLTEAGYVGEDVENIVLKLLQSCN 173

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDEI ++S
Sbjct: 174 YDVERAQRGIVYIDEIDKIS 193


>gi|256369535|ref|YP_003107045.1| ATP-dependent protease ATP-binding subunit [Brucella microti CCM
           4915]
 gi|306841835|ref|ZP_07474517.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella sp.
           BO2]
 gi|306843973|ref|ZP_07476568.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella sp.
           BO1]
 gi|255999697|gb|ACU48096.1| ATP-dependent protease ATP-binding subunit [Brucella microti CCM
           4915]
 gi|306275728|gb|EFM57452.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella sp.
           BO1]
 gi|306288062|gb|EFM59459.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella sp.
           BO2]
          Length = 424

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L VGP G GKT LAQ +AR + V F       + +AG +   + N+         
Sbjct: 112 AKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 171

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDE+ ++S
Sbjct: 172 YNVERAQRGIVYIDEVDKIS 191


>gi|237736665|ref|ZP_04567146.1| ATP-dependent protease ATP-binding subunit [Fusobacterium
           mortiferum ATCC 9817]
 gi|229420527|gb|EEO35574.1| ATP-dependent protease ATP-binding subunit [Fusobacterium
           mortiferum ATCC 9817]
          Length = 412

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           +VL +GP G GKT LAQ +AR L V F       + +AG    D+  +L  L        
Sbjct: 114 NVLLIGPTGSGKTLLAQTLARSLKVPFAIADATTLTEAGYVGDDVENVLVRLLQAADYDV 173

Query: 104 --EDRDVLFIDEIHRLS 118
              ++ +++IDEI +++
Sbjct: 174 EAAEKGIIYIDEIDKIA 190


>gi|307150315|ref|YP_003885699.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7822]
 gi|306980543|gb|ADN12424.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7822]
          Length = 628

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 209 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 239


>gi|156089603|ref|XP_001612208.1| ATPase, AAA family protein [Babesia bovis]
 gi|154799462|gb|EDO08640.1| ATPase, AAA family protein [Babesia bovis]
          Length = 893

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 26/46 (56%)

Query: 45  EAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           E  K + +A   VL  GPPG  KT +A+ VA E  +NF S  GP I
Sbjct: 583 EYKKLQIQAPRGVLLYGPPGCSKTLMAKAVATESHMNFISVKGPEI 628


>gi|153007227|ref|YP_001381552.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter sp. Fw109-5]
 gi|152030800|gb|ABS28568.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter sp. Fw109-5]
          Length = 623

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 51/107 (47%), Gaps = 15/107 (14%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAK-------ARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  EA + LK  +E  K         A     VL VGPPG GKT LA+ VA E 
Sbjct: 163 TFDDVAGVDEAKAELKEVVEFLKDPKRYGRLGARMPKGVLLVGPPGTGKTLLAKAVAGEA 222

Query: 79  GVNFRSTSGPVIAK--AGDLAALLTNLEDR------DVLFIDEIHRL 117
            V F S SG    +   G  AA + +L ++       ++FIDE+  L
Sbjct: 223 AVPFFSISGSEFVEMFVGVGAARVRDLFEQARLKAPAIIFIDELDAL 269


>gi|91088941|ref|XP_973644.1| PREDICTED: similar to cutlet CG33122-PA [Tribolium castaneum]
          Length = 771

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 48/96 (50%), Gaps = 15/96 (15%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD---LAALLTNLEDRDVL--FID 112
           L  GPPGLGKTTLA +VAR  G N       V   A D     A  T LE+   +   +D
Sbjct: 296 LLCGPPGLGKTTLAHMVARHAGYNV------VEVNASDDRSCEAFKTALENATQMRSVVD 349

Query: 113 EIHRLSIIV-EEI--LYPAMEDFQLDLMVGEGPSAR 145
           +  R + +V +EI    P+  D+ +  + G GPS R
Sbjct: 350 QERRPNCLVFDEIDGAPPSSIDYLVKFVQG-GPSGR 384


>gi|3808101|emb|CAA09935.1| chloroplast protease [Capsicum annuum]
          Length = 693

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 297


>gi|50954516|ref|YP_061804.1| ATP-dependent protease ATP-binding subunit [Leifsonia xyli subsp.
           xyli str. CTCB07]
 gi|61211467|sp|Q6AFZ6|CLPX_LEIXX RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|50950998|gb|AAT88699.1| ATP-dependent Clp protease ATP binding subunit [Leifsonia xyli
           subsp. xyli str. CTCB07]
          Length = 424

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------ED 105
           A  ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+        D
Sbjct: 116 AKSNILLIGPTGCGKTYLAQTLARRLNVPFAVADATALTEAGYVGEDVENILLKLIQAAD 175

Query: 106 RDV-------LFIDEIHRLS 118
            DV       ++IDE+ +++
Sbjct: 176 YDVKRAETGIIYIDEVDKIA 195


>gi|23097484|ref|NP_690950.1| DNA polymerase III gamma and tau subunits [Oceanobacillus iheyensis
           HTE831]
 gi|22775707|dbj|BAC11985.1| DNA polymerase III gamma and tau subunits [Oceanobacillus iheyensis
           HTE831]
          Length = 569

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 92/242 (38%), Gaps = 49/242 (20%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELG 79
           + RPRT E+  GQ      L+  IE  K       H  LF GP G GKT+ A++ A+ + 
Sbjct: 9   VWRPRTFEDVVGQTHITRTLQNAIEQDK-----FSHAYLFSGPRGTGKTSAAKIFAQTIN 63

Query: 80  VNFRSTSGPVIAKAGDLAAL--LTNLEDRDVLFIDEIHRLSI------------------ 119
                   PV     + AA   + +    DV+ ID     S+                  
Sbjct: 64  CEH----APVKEPCNECAACRGIQDGSVSDVIEIDAASNTSVDDIRDIRDKVKYAPSTVP 119

Query: 120 ----IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATT---RVGLLTNPLQD 172
               I++E+   ++  F   L   E P    V         I ATT   ++ L       
Sbjct: 120 YKVYIIDEVHMISVNAFNALLKTLEEPPKHVV--------FILATTEPHKIPLTIISRCQ 171

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           RF      N   +  ++TI+Q       + VTDEA   +A+ + G  R A  +L +   +
Sbjct: 172 RFDFKPISNQSIVGRMQTIMQ----AENIHVTDEALESVALAAEGGMRDALSILDQAISY 227

Query: 233 AE 234
           +E
Sbjct: 228 SE 229


>gi|86131728|ref|ZP_01050325.1| conserved hypothetical protein [Dokdonia donghaensis MED134]
 gi|85817550|gb|EAQ38724.1| conserved hypothetical protein [Dokdonia donghaensis MED134]
          Length = 1625

 Score = 40.8 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 25/42 (59%)

Query: 50   RAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA 91
            R + +  +L + PPG GKTTL + +A  LG+ F   +GP I 
Sbjct: 1257 RTDRMGMLLLISPPGYGKTTLMEYIANRLGLVFVKINGPAIG 1298


>gi|116627469|ref|YP_820088.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           thermophilus LMD-9]
 gi|122267933|sp|Q03LN0|CLPX_STRTD RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|116100746|gb|ABJ65892.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus
           thermophilus LMD-9]
          Length = 408

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +AR L V F       + +AG    D+  +L  L        
Sbjct: 112 NILMIGPTGSGKTYLAQTLARSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADFNI 171

Query: 104 --EDRDVLFIDEIHRLS 118
              +R ++++DEI +++
Sbjct: 172 ERAERGIIYVDEIDKIA 188


>gi|312865011|ref|ZP_07725239.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           downei F0415]
 gi|311099122|gb|EFQ57338.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           downei F0415]
          Length = 400

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 16/92 (17%)

Query: 43  FIEAAKARAEAL--DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DL 96
           F+E+A+     L   ++L +GP G GKT LAQ +A+ L V F       + +AG    D+
Sbjct: 89  FVESAQDEDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDV 148

Query: 97  AALLTNL----------EDRDVLFIDEIHRLS 118
             +L  L           +R ++++DEI +++
Sbjct: 149 ENILLKLIQAADFNIERAERGIIYVDEIDKIA 180


>gi|300868425|ref|ZP_07113046.1| FtsH peptidase [Oscillatoria sp. PCC 6506]
 gi|300333559|emb|CBN58234.1| FtsH peptidase [Oscillatoria sp. PCC 6506]
          Length = 628

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 209 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 239


>gi|302785487|ref|XP_002974515.1| hypothetical protein SELMODRAFT_149856 [Selaginella moellendorffii]
 gi|300158113|gb|EFJ24737.1| hypothetical protein SELMODRAFT_149856 [Selaginella moellendorffii]
          Length = 597

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 170 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 200


>gi|284929257|ref|YP_003421779.1| membrane protease FtsH catalytic subunit [cyanobacterium UCYN-A]
 gi|284809701|gb|ADB95398.1| membrane protease FtsH catalytic subunit [cyanobacterium UCYN-A]
          Length = 626

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 209 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 239


>gi|282882852|ref|ZP_06291457.1| cell division protease FtsH-like protein [Peptoniphilus lacrimalis
           315-B]
 gi|281297263|gb|EFA89754.1| cell division protease FtsH-like protein [Peptoniphilus lacrimalis
           315-B]
          Length = 651

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 34/65 (52%), Gaps = 8/65 (12%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--VL 109
           L VGPPG GKT LA+ VA E  V F S SG    +      A  +  L    E++   ++
Sbjct: 215 LLVGPPGTGKTLLAKAVASEAEVPFFSISGSEFVEMFVGLGAAKVRDLFKQAEEKAPCII 274

Query: 110 FIDEI 114
           FIDEI
Sbjct: 275 FIDEI 279


>gi|226311383|ref|YP_002771277.1| ATP-dependent protease La homolog [Brevibacillus brevis NBRC
           100599]
 gi|226094331|dbj|BAH42773.1| ATP-dependent protease La homolog [Brevibacillus brevis NBRC
           100599]
          Length = 565

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 5/59 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           RP TLEE  GQ +    L+  +     +     HV+  GPPG+GKT  A+VV  E   N
Sbjct: 65  RPATLEEIVGQEDGLRALRAALCGPNPQ-----HVIIYGPPGVGKTAAARVVLEEAKKN 118


>gi|254780271|ref|YP_003064684.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|254039948|gb|ACT56744.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 424

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L VGP G GKT LAQ +AR + V F       + +AG +   + N+         
Sbjct: 112 AKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 171

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDE+ ++S
Sbjct: 172 YNVERAQRGIVYIDEVDKIS 191


>gi|197302445|ref|ZP_03167500.1| hypothetical protein RUMLAC_01173 [Ruminococcus lactaris ATCC
           29176]
 gi|197298343|gb|EDY32888.1| hypothetical protein RUMLAC_01173 [Ruminococcus lactaris ATCC
           29176]
          Length = 423

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 28/129 (21%)

Query: 18  DISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEA---------LDHVLFVGPP 63
           DI+LL P  ++ F      GQ EA   L V +     R  A           ++L +GP 
Sbjct: 60  DINLLTPEEMKAFLDQYVIGQDEAKKVLSVAVYNHYKRILAEQDLGVELQKSNILMLGPT 119

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------------EDRDVL 109
           G GKT LAQ +A+ L V F       + +AG +   + N+               +  ++
Sbjct: 120 GCGKTLLAQTLAKILNVPFAIADATALTEAGYVGEDVENILLKVIQAADGDIERAEHGII 179

Query: 110 FIDEIHRLS 118
           +IDEI +++
Sbjct: 180 YIDEIDKIT 188


>gi|189199446|ref|XP_001936060.1| DNA-dependent ATPase MGS1 [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187983159|gb|EDU48647.1| DNA-dependent ATPase MGS1 [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 534

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 68/152 (44%), Gaps = 26/152 (17%)

Query: 22  LRPRTLEEFTGQ--VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +RP +LE   GQ  V     L+  ++  +     L  ++  G PG GKTT+A+++A   G
Sbjct: 123 MRPMSLEHVYGQELVGPKGILRAMVDEGR-----LPSMVLWGRPGTGKTTIARLIANTSG 177

Query: 80  VNF---RSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAM 129
             F    STS     +   + A+ T           + ++F DE+HR S   ++     +
Sbjct: 178 SRFVEINSTS----TRLEQVRAIFTEASQDLRLTGRKTIVFCDELHRFSKTQQDAFLGPV 233

Query: 130 EDFQLDLMVG--EGPSARSVKINLSR---FTL 156
           E   + L+    E PS + +   LSR   FTL
Sbjct: 234 ESGTITLIAATTENPSFKIISALLSRCRTFTL 265


>gi|218440251|ref|YP_002378580.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7424]
 gi|218172979|gb|ACK71712.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7424]
          Length = 628

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 209 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 239


>gi|153814722|ref|ZP_01967390.1| hypothetical protein RUMTOR_00937 [Ruminococcus torques ATCC 27756]
 gi|317500253|ref|ZP_07958482.1| cell division protein FtsH [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331087513|ref|ZP_08336447.1| hypothetical protein HMPREF1025_00030 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145847753|gb|EDK24671.1| hypothetical protein RUMTOR_00937 [Ruminococcus torques ATCC 27756]
 gi|316898349|gb|EFV20391.1| cell division protein FtsH [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330406265|gb|EGG85782.1| hypothetical protein HMPREF1025_00030 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 645

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 34/65 (52%), Gaps = 8/65 (12%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--VL 109
           L VGPPG GKT LA+ VA E GV F S SG    +      A  +  L     ++   ++
Sbjct: 205 LLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEMFVGMGASKVRDLFKQANEKAPCIV 264

Query: 110 FIDEI 114
           FIDEI
Sbjct: 265 FIDEI 269


>gi|120610145|ref|YP_969823.1| ATP-dependent protease ATP-binding subunit ClpX [Acidovorax
           citrulli AAC00-1]
 gi|326316314|ref|YP_004233986.1| ATP-dependent Clp protease ATP-binding subunit clpX [Acidovorax
           avenae subsp. avenae ATCC 19860]
 gi|166214750|sp|A1TM61|CLPX_ACIAC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|120588609|gb|ABM32049.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acidovorax
           citrulli AAC00-1]
 gi|323373150|gb|ADX45419.1| ATP-dependent Clp protease ATP-binding subunit clpX [Acidovorax
           avenae subsp. avenae ATCC 19860]
          Length = 421

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+         
Sbjct: 114 AKSNILLIGPTGSGKTLLAQTLARMLDVPFVMADATTLTEAGYVGEDVENIVQKLLQSCN 173

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDEI ++S
Sbjct: 174 YEVERAQRGIVYIDEIDKIS 193


>gi|29831209|ref|NP_825843.1| cell division protein FtsH [Streptomyces avermitilis MA-4680]
 gi|29608323|dbj|BAC72378.1| putative cell division protein FtsH [Streptomyces avermitilis
           MA-4680]
          Length = 664

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 4/58 (6%)

Query: 34  VEACSNLKVFI-EAAKARA---EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VE    +K F+ E AK +A   +    VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 169 VEELHEIKEFLQEPAKFQAVGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISG 226


>gi|4325041|gb|AAD17230.1| FtsH-like protein Pftf precursor [Nicotiana tabacum]
          Length = 693

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 297


>gi|71900576|ref|ZP_00682703.1| Peptidase S16, ATP-dependent protease La [Xylella fastidiosa Ann-1]
 gi|71729633|gb|EAO31737.1| Peptidase S16, ATP-dependent protease La [Xylella fastidiosa Ann-1]
          Length = 823

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 85/191 (44%), Gaps = 46/191 (24%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           +  VGPPG+GKT+LAQ +A+     F R + G V  +A              G +   L 
Sbjct: 353 LCLVGPPGVGKTSLAQSIAKATNRKFVRMSLGGVRDEAEVRGHRRTYVGSMPGRVVQNLN 412

Query: 102 NLEDRDVLFI-DEIHRL--------SIIVEEILYP----AMEDFQLDLMVGEGPSARSVK 148
            +  ++ LF+ DEI ++        S  + E+L P    A  D  LD           V 
Sbjct: 413 KVGSKNPLFVLDEIDKMAMDFRGDPSAALLEVLDPEQNNAFNDHYLD-----------VD 461

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY-EIEDL----KTIVQRGAKLTGLAV 203
           ++LS    +A +  +  +  PL DR  + IR+  Y E E L    + +V +  +  GLAV
Sbjct: 462 LDLSEVMFVATSNSLN-IPGPLLDRMEV-IRIPGYTEDEKLNIATRYLVPKQIRANGLAV 519

Query: 204 TDEAACEIAMR 214
            + A  E A+R
Sbjct: 520 EELAIGEDAIR 530


>gi|330981616|gb|EGH79719.1| peptidase S16, ATP-dependent protease La [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 805

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 86/215 (40%), Gaps = 53/215 (24%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAKAGDLAALLT 101
           VL VGPPG+GKT++ + +A  LG  F   S                 + A+ G L   L 
Sbjct: 387 VLLVGPPGVGKTSVGRSIAESLGRPFYRLSVGGMRDEAEIKGHRRTYIGAQPGKLVQALK 446

Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAME----DFQLDLMVGEGPSARSVK 148
           ++E  + V+ +DEI ++    +        E L P       D  LDL           +
Sbjct: 447 DVEVMNPVIMLDEIDKMGQSYQGDPASALLETLDPEQNVEFLDHYLDL-----------R 495

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR----------GAKL 198
           ++LS+   +     +  +  PL DR  + IRL+ Y  E+   I +R          G   
Sbjct: 496 LDLSKVLFVCTANTLDSIPGPLLDRMEV-IRLSGYITEEKLAIAKRHLWPKQLAKAGVAK 554

Query: 199 TGLAVTDE---AACEIAMRSRGTPRIAGRLLRRVR 230
             L+++D    A  E   R  G   +  +L + VR
Sbjct: 555 NKLSISDSALRAVIEGYAREAGVRHLEKQLGKLVR 589


>gi|328952153|ref|YP_004369487.1| ATP-dependent Clp protease ATP-binding subunit clpX [Desulfobacca
           acetoxidans DSM 11109]
 gi|328452477|gb|AEB08306.1| ATP-dependent Clp protease ATP-binding subunit clpX [Desulfobacca
           acetoxidans DSM 11109]
          Length = 417

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +AR L V F       + +AG    D+  ++ NL        
Sbjct: 113 NILLIGPTGSGKTLLAQTLARILNVPFTIADATTLTEAGYVGEDVENIILNLLQVADYDI 172

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI +++
Sbjct: 173 EKATRGIVYIDEIDKIA 189


>gi|323487347|ref|ZP_08092647.1| hypothetical protein HMPREF9474_04398 [Clostridium symbiosum
           WAL-14163]
 gi|323694214|ref|ZP_08108390.1| cell division protein FtsH [Clostridium symbiosum WAL-14673]
 gi|323399392|gb|EGA91790.1| hypothetical protein HMPREF9474_04398 [Clostridium symbiosum
           WAL-14163]
 gi|323501687|gb|EGB17573.1| cell division protein FtsH [Clostridium symbiosum WAL-14673]
          Length = 592

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           V+ VGPPG GKT LA+ VA E GV F S SG
Sbjct: 187 VILVGPPGTGKTLLAKAVAGEAGVPFFSISG 217


>gi|317484643|ref|ZP_07943546.1| ATP-dependent metallopeptidase HflB [Bilophila wadsworthia 3_1_6]
 gi|316924117|gb|EFV45300.1| ATP-dependent metallopeptidase HflB [Bilophila wadsworthia 3_1_6]
          Length = 650

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 190 VLLVGPPGTGKTLLARAVAGEAGVPFFSISG 220


>gi|314937282|ref|ZP_07844624.1| ATP-dependent metalloprotease FtsH [Staphylococcus hominis subsp.
           hominis C80]
 gi|313654578|gb|EFS18328.1| ATP-dependent metalloprotease FtsH [Staphylococcus hominis subsp.
           hominis C80]
          Length = 710

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E G  F S SG       V   A  +  L  N +     +
Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 260

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 261 IFIDEI 266


>gi|300814179|ref|ZP_07094462.1| ATP-dependent metallopeptidase HflB [Peptoniphilus sp. oral taxon
           836 str. F0141]
 gi|300511836|gb|EFK39053.1| ATP-dependent metallopeptidase HflB [Peptoniphilus sp. oral taxon
           836 str. F0141]
          Length = 651

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 34/65 (52%), Gaps = 8/65 (12%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--VL 109
           L VGPPG GKT LA+ VA E  V F S SG    +      A  +  L    E++   ++
Sbjct: 215 LLVGPPGTGKTLLAKAVASEAEVPFFSISGSEFVEMFVGLGAAKVRDLFKQAEEKAPCII 274

Query: 110 FIDEI 114
           FIDEI
Sbjct: 275 FIDEI 279


>gi|297562334|ref|YP_003681308.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296846782|gb|ADH68802.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 424

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 59/131 (45%), Gaps = 32/131 (24%)

Query: 20  SLLRPRTLEEF-----TGQVEACSNLKV--FIEAAKARAE-----------ALDHVLFVG 61
           SL +PR + EF      GQ +A   L V  +    + R+E           A  ++L +G
Sbjct: 60  SLPKPREIYEFLDSYVIGQEQAKKALSVAVYNHYKRVRSEGDRPGEEDVEIAKSNILLLG 119

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDV------ 108
           P G GKT LAQ +AR L V F       + +AG +   + N+        D DV      
Sbjct: 120 PTGSGKTLLAQTLARILNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKKAETG 179

Query: 109 -LFIDEIHRLS 118
            ++IDE+ +++
Sbjct: 180 IIYIDEVDKVA 190


>gi|294653582|ref|NP_714595.2| magnesium chelatase, putative [Leptospira interrogans serovar Lai
           str. 56601]
 gi|293630704|gb|AAN51610.2| MoxR-like ATPase [Leptospira interrogans serovar Lai str. 56601]
          Length = 327

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 92/208 (44%), Gaps = 36/208 (17%)

Query: 15  EDADISLLRPRTLE-----EFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           ED + + ++  TL+     E TGQ E   N+ V +           HVL  G PGL KT 
Sbjct: 7   EDLEFARIKLETLKQELGKEITGQDEVIRNVLVCLICQ-------GHVLLEGMPGLAKTL 59

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALL------TNLEDRD------VLFIDEIHRL 117
           LA+ +A  L +NF+           DL   +      T  E R       VL  DEI+R 
Sbjct: 60  LARSLASALDLNFKRIQFTPDLLPADLVGTVVFNPKTTEFETRKGPVFTGVLLADEINRA 119

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL-TNPL----QD 172
              V+  L  +ME  +  + +G+    ++ K++   F +IA    +    T PL     D
Sbjct: 120 PAKVQSALLESME--EKTVTIGD----KTYKLD-KPFLVIATQNPIDQDGTYPLPEAQMD 172

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
           RF + I +++  +E+  +I+ +  K++ 
Sbjct: 173 RFLMKINVDYPTLEEEVSILDQHGKISS 200


>gi|289760036|ref|ZP_06519414.1| ATPase [Mycobacterium tuberculosis T85]
 gi|289715600|gb|EFD79612.1| ATPase [Mycobacterium tuberculosis T85]
          Length = 404

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 14/78 (17%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEE------FTGQVEACSNLKVFIEAAKARAEALDHV 57
           RE LL+   ++ D  I L R +   E         +V A   +KV        A+   H+
Sbjct: 146 RERLLAEAQAELDRQIGLTRVKNQIERYRAATLMARVRAAKGMKV--------AQPSKHM 197

Query: 58  LFVGPPGLGKTTLAQVVA 75
           +F GPPG GKTT+A+VVA
Sbjct: 198 IFTGPPGTGKTTIARVVA 215


>gi|290981598|ref|XP_002673517.1| predicted protein [Naegleria gruberi]
 gi|284087101|gb|EFC40773.1| predicted protein [Naegleria gruberi]
          Length = 459

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 10/70 (14%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------GPVIAKAGDLAALLTNLEDRD 107
           VLF GPPG GKT+LA+ +A+E    F +           G      G L +  T ++   
Sbjct: 220 VLFYGPPGTGKTSLAKAIAKECNCAFLNVKREFLSDFLYGETEKLVGALFSFATKVKPC- 278

Query: 108 VLFIDEIHRL 117
           ++FIDEI  L
Sbjct: 279 IIFIDEIESL 288


>gi|289578969|ref|YP_003477596.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter italicus
           Ab9]
 gi|289528682|gb|ADD03034.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter italicus
           Ab9]
          Length = 510

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 52/121 (42%), Gaps = 16/121 (13%)

Query: 10  RNVSQEDADISLLRPR-TLEEFTGQVEACSNLKVFIE-------AAKARAEALDHVLFVG 61
            N+++   D S  +   T ++  G  E    LKV I+         K  A+    +LF G
Sbjct: 65  NNITEAKEDTSHRKNNITFKDVAGLDEVIDELKVIIDFMTNTEKYNKMGAKIPKGILFYG 124

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DVLFIDE 113
           PPG GKT LA  +A E    F S SG       V   A  + AL    +     ++FIDE
Sbjct: 125 PPGTGKTLLATALAGETNSTFISASGSEFVEKYVGVGASRIRALFAKAKKSTPSIIFIDE 184

Query: 114 I 114
           I
Sbjct: 185 I 185


>gi|260792464|ref|XP_002591235.1| hypothetical protein BRAFLDRAFT_106463 [Branchiostoma floridae]
 gi|229276438|gb|EEN47246.1| hypothetical protein BRAFLDRAFT_106463 [Branchiostoma floridae]
          Length = 345

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 17/25 (68%), Positives = 18/25 (72%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVN 81
            L  GPPGLGKTTLA V+AR  G N
Sbjct: 312 ALLCGPPGLGKTTLAHVIARHAGYN 336


>gi|170761619|ref|YP_001787678.1| stage V sporulation protein K [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169408608|gb|ACA57019.1| stage V sporulation protein K [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 1212

 Score = 40.8 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 53/204 (25%), Positives = 90/204 (44%), Gaps = 36/204 (17%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKARAEALD-HVLFVGPPGLGKTTLAQVVAREL----- 78
           ++++++   +E    ++   E++  +A  +  H++F G PG GKTT+A++VA+ L     
Sbjct: 423 KSVKQYVESLEDNLKIQKMRESSGFKAANISMHMIFTGNPGTGKTTIARIVAKYLKALGI 482

Query: 79  ---GVNFRSTSGPVIAKAGDLAALLTNLEDRD----VLFIDEIHRLSIIVEEI------- 124
              G     T   ++ +     A LTN   +     VLFIDE + L    E+I       
Sbjct: 483 LSQGQLREVTRADLVGQYVGHTAKLTNDVIKSSLGGVLFIDEAYALCRDKEDIFGIEAID 542

Query: 125 -LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP-LQDRFGIPIRLNF 182
            L   +ED + DL+V         K  ++ F          L TNP L+ RF   I    
Sbjct: 543 TLVKGIEDNREDLVV----ILAGYKDEMNEF----------LKTNPGLKSRFPNIINFED 588

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDE 206
           Y  E++  I    AK  G  ++++
Sbjct: 589 YTSEEMYEISLVTAKSKGYKISED 612


>gi|157149993|ref|YP_001450429.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           gordonii str. Challis substr. CH1]
 gi|262282292|ref|ZP_06060060.1| ATP-dependent protease ATP-binding subunit [Streptococcus sp.
           2_1_36FAA]
 gi|189044157|sp|A8AXB9|CLPX_STRGC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|157074787|gb|ABV09470.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           gordonii str. Challis substr. CH1]
 gi|262261583|gb|EEY80281.1| ATP-dependent protease ATP-binding subunit [Streptococcus sp.
           2_1_36FAA]
          Length = 409

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +AR L V F       + +AG    D+  +L  L        
Sbjct: 113 NILMIGPTGSGKTFLAQTLARSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNI 172

Query: 104 --EDRDVLFIDEIHRLS 118
              +R ++++DEI +++
Sbjct: 173 ERAERGIIYVDEIDKIA 189


>gi|123411246|ref|XP_001303853.1| pontin [Trichomonas vaginalis G3]
 gi|121885263|gb|EAX90923.1| pontin, putative [Trichomonas vaginalis G3]
          Length = 463

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 29/50 (58%)

Query: 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
          F GQ EA     + +E  K R  A   +LFVG PG GKT +A  +++ELG
Sbjct: 42 FVGQREAREAAGIIVELIKKRHMAGRALLFVGAPGTGKTAIALAISQELG 91


>gi|157112522|ref|XP_001651818.1| aaa atpase [Aedes aegypti]
 gi|108878039|gb|EAT42264.1| aaa atpase [Aedes aegypti]
          Length = 624

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108
           VL VGPPG GKT LA+ VA E G  F + S   +     G+   L      +        
Sbjct: 382 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPST 441

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 442 IFIDEIDSL 450


>gi|50303759|ref|XP_451825.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49640957|emb|CAH02218.1| KLLA0B06523p [Kluyveromyces lactis]
          Length = 997

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  G PG GKT LA  VA++ G+NF S  GP I
Sbjct: 681 ILLYGYPGCGKTMLASAVAQQCGLNFISVKGPEI 714


>gi|21954076|gb|AAK76625.2| putative FtsH protease [Arabidopsis thaliana]
          Length = 501

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 72  VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 102


>gi|50549279|ref|XP_502110.1| YALI0C21868p [Yarrowia lipolytica]
 gi|74689662|sp|Q6CB52|RUVB1_YARLI RecName: Full=RuvB-like helicase 1
 gi|49647977|emb|CAG82430.1| YALI0C21868p [Yarrowia lipolytica]
          Length = 453

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 59/129 (45%), Gaps = 7/129 (5%)

Query: 30  FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG--VNFRSTSG 87
           F GQ EA   L + ++  +A   +   +L  G PG GKT LA  V++ELG  V F    G
Sbjct: 40  FVGQTEAREALGLVVDLIRASKMSGRGILLAGGPGTGKTALALAVSQELGPKVPFCPIVG 99

Query: 88  PVI--AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSAR 145
             I  A+    AAL+ N      L I E     I   E+     E+ + D + G G + R
Sbjct: 100 SEIFSAEVKKTAALMENFRRAIGLRIKETK--DIYEGEVTELTPEEAE-DPLGGYGKTIR 156

Query: 146 SVKINLSRF 154
           SV + L  +
Sbjct: 157 SVVVGLKSY 165


>gi|163848711|ref|YP_001636755.1| ATPase central domain-containing protein [Chloroflexus aurantiacus
           J-10-fl]
 gi|222526654|ref|YP_002571125.1| AAA ATPase central domain-containing protein [Chloroflexus sp.
           Y-400-fl]
 gi|163670000|gb|ABY36366.1| AAA ATPase central domain protein [Chloroflexus aurantiacus
           J-10-fl]
 gi|222450533|gb|ACM54799.1| AAA ATPase central domain protein [Chloroflexus sp. Y-400-fl]
          Length = 658

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 12/70 (17%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA----GDLAALLTNLEDRD----- 107
           +L +GPPG GK+ LAQ ++ E GV F   S P +  A    G++  +    + R      
Sbjct: 152 ILLIGPPGTGKSYLAQAISTEAGVPFGYLSAPSLLSAWMGMGNIKVMNLYRKARRLAREY 211

Query: 108 ---VLFIDEI 114
              +LFIDEI
Sbjct: 212 GACILFIDEI 221


>gi|15923501|ref|NP_371035.1| cell-division protein [Staphylococcus aureus subsp. aureus Mu50]
 gi|15926188|ref|NP_373721.1| cell-division protein [Staphylococcus aureus subsp. aureus N315]
 gi|21282195|ref|NP_645283.1| cell-division protein (ATP-dependent Zn metallopeptidase)
           [Staphylococcus aureus subsp. aureus MW2]
 gi|49482738|ref|YP_039962.1| cell division protein [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49485375|ref|YP_042596.1| putative cell division protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|88194271|ref|YP_499063.1| hypothetical protein SAOUHSC_00486 [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|148266970|ref|YP_001245913.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus JH9]
 gi|150393016|ref|YP_001315691.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156978839|ref|YP_001441098.1| cell-division protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|253315220|ref|ZP_04838433.1| cell-division protein [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|253730979|ref|ZP_04865144.1| cell division protein FtsH [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253735246|ref|ZP_04869411.1| cell division protein FtsH [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|255005304|ref|ZP_05143905.2| cell-division protein [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257424623|ref|ZP_05601051.1| cell-division protein [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257427289|ref|ZP_05603690.1| cell-division protein [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257429926|ref|ZP_05606312.1| cell-division protein [Staphylococcus aureus subsp. aureus 68-397]
 gi|257432628|ref|ZP_05608990.1| cell-division protein [Staphylococcus aureus subsp. aureus E1410]
 gi|257435532|ref|ZP_05611582.1| cell-division protein [Staphylococcus aureus subsp. aureus M876]
 gi|257794249|ref|ZP_05643228.1| cell division protein [Staphylococcus aureus A9781]
 gi|258407234|ref|ZP_05680379.1| cell division protein [Staphylococcus aureus A9763]
 gi|258420798|ref|ZP_05683734.1| conserved hypothetical protein [Staphylococcus aureus A9719]
 gi|258429628|ref|ZP_05688302.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus A9299]
 gi|258446102|ref|ZP_05694263.1| cell-division protein [Staphylococcus aureus A6300]
 gi|258448010|ref|ZP_05696140.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus A6224]
 gi|258453844|ref|ZP_05701817.1| cell-division protein [Staphylococcus aureus A5937]
 gi|269202131|ref|YP_003281400.1| cell division protein FtsH, putative [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282895119|ref|ZP_06303339.1| cell division protease FtsH [Staphylococcus aureus A8117]
 gi|282903097|ref|ZP_06310989.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus C160]
 gi|282904886|ref|ZP_06312746.1| cell-division protein [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282907833|ref|ZP_06315671.1| cell-division protein [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282910149|ref|ZP_06317955.1| cell-division protein [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282913339|ref|ZP_06321130.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus M899]
 gi|282923043|ref|ZP_06330729.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus
           C101]
 gi|283768946|ref|ZP_06341855.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus
           H19]
 gi|283957301|ref|ZP_06374759.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|293500388|ref|ZP_06666240.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293509327|ref|ZP_06668043.1| cell division protease ftsH [Staphylococcus aureus subsp. aureus
           M809]
 gi|293515915|ref|ZP_06670605.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus M1015]
 gi|295407401|ref|ZP_06817198.1| cell division protease FtsH [Staphylococcus aureus A8819]
 gi|295427045|ref|ZP_06819682.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|296276164|ref|ZP_06858671.1| cell division protein FtsH, putative [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297207386|ref|ZP_06923825.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|297246481|ref|ZP_06930321.1| cell division protease FtsH [Staphylococcus aureus A8796]
 gi|297591578|ref|ZP_06950215.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus MN8]
 gi|300910345|ref|ZP_07127798.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|13700401|dbj|BAB41699.1| cell-division protein [Staphylococcus aureus subsp. aureus N315]
 gi|14246279|dbj|BAB56673.1| cell-division protein [Staphylococcus aureus subsp. aureus Mu50]
 gi|21203631|dbj|BAB94331.1| cell-division protein [Staphylococcus aureus subsp. aureus MW2]
 gi|49240867|emb|CAG39534.1| putative cell division protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49243818|emb|CAG42243.1| putative cell division protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|87201829|gb|ABD29639.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|147740039|gb|ABQ48337.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus JH9]
 gi|149945468|gb|ABR51404.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156720974|dbj|BAF77391.1| cell-division protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|253725291|gb|EES94020.1| cell division protein FtsH [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253726806|gb|EES95535.1| cell division protein FtsH [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257272650|gb|EEV04770.1| cell-division protein [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257275940|gb|EEV07408.1| cell-division protein [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257279442|gb|EEV10037.1| cell-division protein [Staphylococcus aureus subsp. aureus 68-397]
 gi|257282493|gb|EEV12626.1| cell-division protein [Staphylococcus aureus subsp. aureus E1410]
 gi|257285169|gb|EEV15286.1| cell-division protein [Staphylococcus aureus subsp. aureus M876]
 gi|257788221|gb|EEV26561.1| cell division protein [Staphylococcus aureus A9781]
 gi|257841192|gb|EEV65641.1| cell division protein [Staphylococcus aureus A9763]
 gi|257843190|gb|EEV67603.1| conserved hypothetical protein [Staphylococcus aureus A9719]
 gi|257849687|gb|EEV73654.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus A9299]
 gi|257855079|gb|EEV78021.1| cell-division protein [Staphylococcus aureus A6300]
 gi|257858700|gb|EEV81573.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus A6224]
 gi|257864015|gb|EEV86770.1| cell-division protein [Staphylococcus aureus A5937]
 gi|262074421|gb|ACY10394.1| cell division protein FtsH, putative [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282314562|gb|EFB44949.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus
           C101]
 gi|282322810|gb|EFB53130.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus M899]
 gi|282325997|gb|EFB56303.1| cell-division protein [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282328309|gb|EFB58584.1| cell-division protein [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282332003|gb|EFB61512.1| cell-division protein [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282596523|gb|EFC01483.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus C160]
 gi|282762537|gb|EFC02677.1| cell division protease FtsH [Staphylococcus aureus A8117]
 gi|283461127|gb|EFC08213.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus
           H19]
 gi|283469803|emb|CAQ49014.1| putative Cell division protease FtsH homolog [Staphylococcus aureus
           subsp. aureus ST398]
 gi|283791225|gb|EFC30035.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|285816210|gb|ADC36697.1| Cell division protein FtsH [Staphylococcus aureus 04-02981]
 gi|290921323|gb|EFD98381.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291096348|gb|EFE26608.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291467872|gb|EFF10382.1| cell division protease ftsH [Staphylococcus aureus subsp. aureus
           M809]
 gi|294967758|gb|EFG43790.1| cell division protease FtsH [Staphylococcus aureus A8819]
 gi|295129048|gb|EFG58677.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|296887949|gb|EFH26843.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|297176668|gb|EFH35930.1| cell division protease FtsH [Staphylococcus aureus A8796]
 gi|297575447|gb|EFH94164.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus MN8]
 gi|300888334|gb|EFK83521.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|302332224|gb|ADL22417.1| cell-division protein (ATP-dependent Zn metallopeptidase)
           [Staphylococcus aureus subsp. aureus JKD6159]
 gi|312436399|gb|ADQ75470.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus TCH60]
 gi|312829006|emb|CBX33848.1| cell division protease ftsH homolog [Staphylococcus aureus subsp.
           aureus ECT-R 2]
 gi|315128639|gb|EFT84642.1| cell-division protein [Staphylococcus aureus subsp. aureus CGS03]
 gi|315193873|gb|EFU24267.1| cell-division protein [Staphylococcus aureus subsp. aureus CGS00]
 gi|329729768|gb|EGG66165.1| ATP-dependent metallopeptidase HflB [Staphylococcus aureus subsp.
           aureus 21189]
 gi|329731083|gb|EGG67455.1| ATP-dependent metallopeptidase HflB [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 697

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E G  F S SG       V   A  +  L  N +     +
Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEMFVGVGASRVRDLFDNAKKNAPCI 260

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 261 IFIDEI 266


>gi|329725069|gb|EGG61564.1| ATP-dependent metallopeptidase HflB [Staphylococcus aureus subsp.
           aureus 21172]
          Length = 697

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E G  F S SG       V   A  +  L  N +     +
Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEMFVGVGASRVRDLFDNAKKNAPCI 260

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 261 IFIDEI 266


>gi|320165062|gb|EFW41961.1| pontin [Capsaspora owczarzaki ATCC 30864]
          Length = 490

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 27/50 (54%)

Query: 30  FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
             GQ EA     V +E  +++  A    L  GPPG GKT LA  VA+ELG
Sbjct: 73  LVGQTEAREACGVIVELIRSKKMAGRAALLAGPPGTGKTALALAVAQELG 122


>gi|304404688|ref|ZP_07386349.1| ATPase associated with various cellular activities AAA_3
           [Paenibacillus curdlanolyticus YK9]
 gi|304346495|gb|EFM12328.1| ATPase associated with various cellular activities AAA_3
           [Paenibacillus curdlanolyticus YK9]
          Length = 322

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 85/201 (42%), Gaps = 28/201 (13%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAAL------LTNLEDR--- 106
           HVL    PG GKT LA+  AR +  +FR           DL+ +      L+  E R   
Sbjct: 42  HVLLEDVPGTGKTLLAKSFARSVDCSFRRVQFTPDLMPSDLSGISFFNQKLSEFEFRPGP 101

Query: 107 ---DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
              +VL  DEI+R +   +  L   ME+ Q+ +   +G + +     +  F +IA    +
Sbjct: 102 LFTNVLLADEINRATPRTQSSLLECMEERQISV---DGQTHQL----MPPFLVIATQNPI 154

Query: 164 GLL-TNPLQ----DRFGIPIRLNFYEIEDLKTIVQRGAKLTGL----AVTDEAACEIAMR 214
               T PL     DRF   + + +   E+   ++ R      L    AV D AA E A R
Sbjct: 155 EQQGTFPLPEAQLDRFLFKLSVGYPSSEESVQLLNRFKAAQPLDQLNAVVDVAALEEAQR 214

Query: 215 SRGTPRIAGRLLRRVRDFAEV 235
                ++   LLR + + AE+
Sbjct: 215 LSAQVQVHDDLLRYIVNIAEL 235


>gi|300710268|ref|YP_003736082.1| AAA family ATPase, CDC48 subfamily protein [Halalkalicoccus
           jeotgali B3]
 gi|299123951|gb|ADJ14290.1| AAA family ATPase, CDC48 subfamily protein [Halalkalicoccus
           jeotgali B3]
          Length = 741

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 8/71 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
           +  +  G  +A  ++K  +E      E  D         VL  GPPG GKT +A+ VA E
Sbjct: 460 SWNDVGGLEDAIGDIKESVEWPLTNPERFDRLGIDPPAGVLLYGPPGTGKTLMAKAVANE 519

Query: 78  LGVNFRSTSGP 88
              NF S  GP
Sbjct: 520 TNANFISIRGP 530



 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 8/76 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNL------EDRDV 108
           VL  GPPG GKT LA+ VA E   +F S +GP +I+K  G+    L  +      E   +
Sbjct: 226 VLLHGPPGTGKTLLAKAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDASEESPAI 285

Query: 109 LFIDEIHRLSIIVEEI 124
           +FIDE+  ++   E++
Sbjct: 286 IFIDELDSIAPKREDV 301


>gi|298708669|emb|CBJ26156.1| putative; katanin like protein [Ectocarpus siliculosus]
          Length = 452

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVAREL-GVNFRSTSGPVIAK-AGDLAALLTNL------EDRDV 108
           +L  GPPG GK+ LA+ VA E   V F  +S  +++K  G+   L+ NL       +R +
Sbjct: 168 ILLYGPPGTGKSYLAKAVATESDAVFFAVSSSDLVSKWQGESEKLVRNLFELAREHERSI 227

Query: 109 LFIDEIHRLS 118
           +FIDE+  + 
Sbjct: 228 IFIDEVDSMC 237


>gi|258424453|ref|ZP_05687332.1| cell-division protein [Staphylococcus aureus A9635]
 gi|257845322|gb|EEV69357.1| cell-division protein [Staphylococcus aureus A9635]
          Length = 697

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E G  F S SG       V   A  +  L  N +     +
Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEMFVGVGASRVRDLFDNAKKNAPCI 260

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 261 IFIDEI 266


>gi|288941152|ref|YP_003443392.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Allochromatium
           vinosum DSM 180]
 gi|288896524|gb|ADC62360.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Allochromatium vinosum DSM 180]
          Length = 419

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 61/127 (48%), Gaps = 29/127 (22%)

Query: 21  LLRPR----TLEEFT-GQVEACSNLKVFI-------EAAKARAE---ALDHVLFVGPPGL 65
           L +PR     L+EF  GQ +A   L V +       E A+A+ +   A  ++L +GP G 
Sbjct: 60  LPKPREINAKLDEFVIGQEKAKKVLSVAVYNHYKRLEVAEAKEDIEIAKSNILLIGPTGS 119

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDV-------LFI 111
           GKT LA+ +AR L V F       + +AG +   + N+        D DV       ++I
Sbjct: 120 GKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQTGIVYI 179

Query: 112 DEIHRLS 118
           DEI ++S
Sbjct: 180 DEIDKIS 186


>gi|254585047|ref|XP_002498091.1| ZYRO0G02002p [Zygosaccharomyces rouxii]
 gi|238940985|emb|CAR29158.1| ZYRO0G02002p [Zygosaccharomyces rouxii]
          Length = 352

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 12/71 (16%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
          RP+ L++ + Q    S LK  + +A      L H+LF GPPG GKT+    + REL    
Sbjct: 30 RPKKLDDVSAQDHTISVLKKTLTSAN-----LPHMLFYGPPGTGKTSTIFALTREL---- 80

Query: 83 RSTSGPVIAKA 93
              GP ++K 
Sbjct: 81 ---YGPELSKT 88


>gi|303279767|ref|XP_003059176.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226459012|gb|EEH56308.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 336

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 33/69 (47%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLED------RDV 108
           VL  GPPG GKT LA+ VA E G  F + S   +     GD   L+  L D         
Sbjct: 65  VLLYGPPGTGKTMLAKAVATECGTTFFNVSASTVVSKWRGDSEKLVRVLFDLARHYGPST 124

Query: 109 LFIDEIHRL 117
           +F+DEI  L
Sbjct: 125 IFLDEIDAL 133


>gi|255558698|ref|XP_002520373.1| Cell division protein ftsH, putative [Ricinus communis]
 gi|223540420|gb|EEF41989.1| Cell division protein ftsH, putative [Ricinus communis]
          Length = 701

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 275 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 305


>gi|167957160|ref|ZP_02544234.1| DNA polymerase III subunit gamma/tau [candidate division TM7
           single-cell isolate TM7c]
 gi|332878578|ref|ZP_08446298.1| DNA polymerase III, subunit gamma and tau [Capnocytophaga sp. oral
           taxon 329 str. F0087]
 gi|332683479|gb|EGJ56356.1| DNA polymerase III, subunit gamma and tau [Capnocytophaga sp. oral
           taxon 329 str. F0087]
          Length = 362

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 96/237 (40%), Gaps = 33/237 (13%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP++  +  GQ    + L   IE     A+AL   LF GP G+GKTT A+++A+++    
Sbjct: 12  RPQSFRDVVGQQAITNTLLNAIENNHL-AQAL---LFTGPRGVGKTTCARILAKKIN--- 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL--------------SIIVEEILYPA 128
              SG  +    D A  +  L+      +D+I +L                I++E+   +
Sbjct: 65  -EQSG--VTDDNDFAFNVFELDAASNNSVDDIRKLIEQVRIPPQVGNYKVYIIDEVHMLS 121

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
              F   L   E P   ++         I ATT    +   +  R  I        I D+
Sbjct: 122 TAAFNAFLKTLEEPPKHAI--------FILATTEKHKIIPTILSRCQI-FDFKRITISDI 172

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           +  ++  A+  G+   DEA   IA ++ G  R A  +  RV  F+     +  T EI
Sbjct: 173 REYLKYIAEQQGIEAEDEALQIIAQKADGAMRDALSIFDRVVSFSGDKITRQATSEI 229


>gi|126668409|ref|ZP_01739366.1| ftsH; cell division protein [Marinobacter sp. ELB17]
 gi|126627118|gb|EAZ97758.1| ftsH; cell division protein [Marinobacter sp. ELB17]
          Length = 613

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           +L VGPPG GKT LA+ VA E GV F S SG    +   G  AA + +L ++       +
Sbjct: 192 ILLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEMFVGVGAARVRDLFEQARGTAPAI 251

Query: 109 LFIDEIHRL 117
           +FIDE+  L
Sbjct: 252 VFIDELDAL 260


>gi|169611346|ref|XP_001799091.1| hypothetical protein SNOG_08783 [Phaeosphaeria nodorum SN15]
 gi|111062831|gb|EAT83951.1| hypothetical protein SNOG_08783 [Phaeosphaeria nodorum SN15]
          Length = 738

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 22/42 (52%), Positives = 23/42 (54%)

Query: 47  AKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           AK    A   VL  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 504 AKVGITAATGVLLWGPPGCGKTLLAKAVAAESKANFISVKGP 545



 Score = 36.6 bits (83), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           +L  GPPG GKT +++  A ELGV F    GP +    +G+    +    D+       +
Sbjct: 203 ILLHGPPGCGKTVISRAFAAELGVPFIEILGPSVVSGMSGESEKQIREHFDKAKEVAPCL 262

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 263 IFIDEI 268


>gi|157872644|ref|XP_001684857.1| AAA family ATPase-like protein [Leishmania major]
 gi|68127927|emb|CAJ06549.1| AAA family ATPase-like protein [Leishmania major strain Friedlin]
          Length = 807

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDRD------V 108
           VL  GPPG  KT LA+ +A E  +NF S  GP V +K  GD    + ++ +R       V
Sbjct: 575 VLLYGPPGCSKTMLAKALANESHMNFISVKGPEVFSKWVGDSEKAVRDIFERARAASPCV 634

Query: 109 LFIDEI 114
           +FIDE+
Sbjct: 635 VFIDEL 640


>gi|83858430|ref|ZP_00951952.1| ATP-dependent protease ATP-binding subunit [Oceanicaulis alexandrii
           HTCC2633]
 gi|83853253|gb|EAP91105.1| ATP-dependent protease ATP-binding subunit [Oceanicaulis alexandrii
           HTCC2633]
          Length = 424

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+            
Sbjct: 113 NILLIGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIVLKLLQAADYNV 172

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 173 ERAQRGIVYIDEIDKIS 189


>gi|328870428|gb|EGG18802.1| AAA ATPase domain-containing protein [Dictyostelium fasciculatum]
          Length = 1173

 Score = 40.8 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           +L  GPPG GKT +A+ +A E  +NF S  GP +     G+    + ++ +R       V
Sbjct: 915 ILLYGPPGTGKTLMAKAIATECSLNFLSVKGPELINMYIGESEKNIRDIFNRARQAKPCV 974

Query: 109 LFIDEIHRLS 118
           +F DE+  L+
Sbjct: 975 IFFDELDSLA 984


>gi|315122829|ref|YP_004063318.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus
           Liberibacter solanacearum CLso-ZC1]
 gi|313496231|gb|ADR52830.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus
           Liberibacter solanacearum CLso-ZC1]
          Length = 424

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L VGP G GKT LAQ +AR + V F       + +AG +   + N+         
Sbjct: 112 AKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 171

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDE+ ++S
Sbjct: 172 YNVERAQRGIVYIDEVDKIS 191


>gi|310657901|ref|YP_003935622.1| clpx-clpp ATP-dependent serine protease ATPase and specificity
           subunit [Clostridium sticklandii DSM 519]
 gi|308824679|emb|CBH20717.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Clostridium sticklandii]
          Length = 421

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 31/134 (23%)

Query: 16  DADIS-LLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEALD-----------HVL 58
           D +I+ L +P+ ++++      GQ +A   L V +     R  A+D           ++L
Sbjct: 54  DTEITGLPKPKEIKDYLDEYVIGQDDAKKTLAVAVYNHYKRIYAVDGKAKDIELQKSNIL 113

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL----------E 104
            +GP G GKT LAQ +A+ L V F       + +AG    D+  +L  L           
Sbjct: 114 MLGPTGSGKTLLAQTLAKMLNVPFAMADATALTEAGYVGEDVENILLKLIQASDYDISKA 173

Query: 105 DRDVLFIDEIHRLS 118
           ++ +++IDEI +++
Sbjct: 174 EKGIIYIDEIDKIT 187


>gi|303328062|ref|ZP_07358501.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfovibrio
           sp. 3_1_syn3]
 gi|302861888|gb|EFL84823.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfovibrio
           sp. 3_1_syn3]
          Length = 429

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 55/122 (45%), Gaps = 25/122 (20%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKAR---AEALDH--------VLFVGPPGLGKTTL 70
           ++ R  E   GQ EA   L V +     R   A+AL H        +L VGP G GKT L
Sbjct: 68  IKDRLDEYVIGQHEAKKILSVAVHNHYKRVFYADALGHDVELEKSNILLVGPSGSGKTLL 127

Query: 71  AQVVARELGVNFRSTSGPVIAKAGD--------LAALLTNLE------DRDVLFIDEIHR 116
           A+ +A+ L V F       + +AG         L  LL N +       + +++IDEI +
Sbjct: 128 AKTLAKVLRVPFAIADATTLTEAGYVGEDVENILVQLLQNADYDLEAAGKGIIYIDEIDK 187

Query: 117 LS 118
           +S
Sbjct: 188 IS 189


>gi|302186924|ref|ZP_07263597.1| peptidase S16, ATP-dependent protease La [Pseudomonas syringae pv.
           syringae 642]
          Length = 805

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 86/215 (40%), Gaps = 53/215 (24%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAKAGDLAALLT 101
           VL VGPPG+GKT++ + +A  LG  F   S                 + A+ G L   L 
Sbjct: 387 VLLVGPPGVGKTSVGRSIAESLGRPFYRLSVGGMRDEAEIKGHRRTYIGAQPGKLVQALK 446

Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAME----DFQLDLMVGEGPSARSVK 148
           ++E  + V+ +DEI ++    +        E L P       D  LDL           +
Sbjct: 447 DVEVMNPVIMLDEIDKMGQSYQGDPASALLETLDPEQNVEFLDHYLDL-----------R 495

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR----------GAKL 198
           ++LS+   +     +  +  PL DR  + IRL+ Y  E+   I +R          G   
Sbjct: 496 LDLSKVLFVCTANTLDSIPGPLLDRMEV-IRLSGYITEEKLAIAKRHLWPKQLAKAGVAK 554

Query: 199 TGLAVTDE---AACEIAMRSRGTPRIAGRLLRRVR 230
             L+++D    A  E   R  G   +  +L + VR
Sbjct: 555 NKLSISDSALRAVIEGYAREAGVRHLEKQLGKLVR 589


>gi|291569654|dbj|BAI91926.1| cell division protein FtsH [Arthrospira platensis NIES-39]
          Length = 629

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 210 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 240


>gi|254499263|ref|ZP_05111939.1| cell division control protein 48 ATPase of AAA family CDC48
           subfamily [Legionella drancourtii LLAP12]
 gi|254351507|gb|EET10366.1| cell division control protein 48 ATPase of AAA family CDC48
           subfamily [Legionella drancourtii LLAP12]
          Length = 708

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           +L VG PG GKT LA+ VA E GVNF S  G
Sbjct: 489 ILLVGSPGCGKTLLAKAVATESGVNFLSVKG 519



 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DV 108
           VL  GPPG GKT +A+ +A E   +F S SGP I     G+  A L  + ++       +
Sbjct: 216 VLLYGPPGSGKTLIAKAIAHETDASFFSISGPEIVHKFYGESEANLRKIFEQAAQKAPSI 275

Query: 109 LFIDEI 114
           +F+DEI
Sbjct: 276 IFLDEI 281


>gi|237746179|ref|ZP_04576659.1| ftsh-2 peptidase, metallo peptidase, merops family m41 protein
           [Oxalobacter formigenes HOxBLS]
 gi|229377530|gb|EEO27621.1| ftsh-2 peptidase, metallo peptidase, merops family m41 protein
           [Oxalobacter formigenes HOxBLS]
          Length = 655

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           +L VGPPG GKT LA+ VA E GV F S +G    +   G  AA + +L ++       +
Sbjct: 199 ILLVGPPGTGKTLLARAVAGEAGVPFFSINGSEFVEMFVGVGAARVRDLFEQARKQAPAI 258

Query: 109 LFIDEIHRLS 118
           +FIDEI  L 
Sbjct: 259 IFIDEIDALG 268


>gi|228476204|ref|ZP_04060907.1| Cell division protease FtsH homolog [Staphylococcus hominis SK119]
 gi|228269689|gb|EEK11188.1| Cell division protease FtsH homolog [Staphylococcus hominis SK119]
          Length = 710

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E G  F S SG       V   A  +  L  N +     +
Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 260

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 261 IFIDEI 266


>gi|255071009|ref|XP_002507586.1| aaa-metalloprotease chloroplast precursor [Micromonas sp. RCC299]
 gi|226522861|gb|ACO68844.1| aaa-metalloprotease chloroplast precursor [Micromonas sp. RCC299]
          Length = 619

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 197 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 227


>gi|224284462|gb|ACN39965.1| unknown [Picea sitchensis]
          Length = 695

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 271 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 301


>gi|213405245|ref|XP_002173394.1| replication factor C subunit 3 [Schizosaccharomyces japonicus
          yFS275]
 gi|212001441|gb|EEB07101.1| replication factor C subunit 3 [Schizosaccharomyces japonicus
          yFS275]
          Length = 338

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 6/63 (9%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT-TLAQVVARELGVN 81
          RP+ L++     +  + L+ FI   +     + H+LF GPPG GKT T+     R  G N
Sbjct: 27 RPKNLDDVVAHKDIIATLEKFISTNR-----VPHMLFYGPPGTGKTSTILACANRIYGPN 81

Query: 82 FRS 84
          FR+
Sbjct: 82 FRN 84


>gi|195623450|gb|ACG33555.1| FtsH6 - Zea mays FtsH protease
          Length = 677

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 250 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 280


>gi|195342330|ref|XP_002037754.1| GM18121 [Drosophila sechellia]
 gi|194132604|gb|EDW54172.1| GM18121 [Drosophila sechellia]
          Length = 993

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 17/27 (62%), Positives = 18/27 (66%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFR 83
            L  GPPGLGKTTLA  +AR  G N R
Sbjct: 423 ALLCGPPGLGKTTLAHTIARHAGYNVR 449


>gi|170076977|ref|YP_001733615.1| ATP-dependent metalloprotease FtsH [Synechococcus sp. PCC 7002]
 gi|169884646|gb|ACA98359.1| ATP-dependent metalloprotease, FtsH family [Synechococcus sp. PCC
           7002]
          Length = 628

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 209 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 239


>gi|158335287|ref|YP_001516459.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris
           marina MBIC11017]
 gi|158305528|gb|ABW27145.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris
           marina MBIC11017]
          Length = 630

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 211 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 241


>gi|57651387|ref|YP_185443.1| cell division protein FtsH, putative [Staphylococcus aureus subsp.
           aureus COL]
 gi|87161534|ref|YP_493198.1| putative cell division protein FtsH [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|151220685|ref|YP_001331507.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|161508751|ref|YP_001574410.1| cell division protein FtsH [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221142297|ref|ZP_03566790.1| cell division protein FtsH [Staphylococcus aureus subsp. aureus
           str. JKD6009]
 gi|258452808|ref|ZP_05700803.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus A5948]
 gi|262049996|ref|ZP_06022855.1| cell-division protein [Staphylococcus aureus D30]
 gi|282925586|ref|ZP_06333239.1| cell division protease FtsH [Staphylococcus aureus A9765]
 gi|284023520|ref|ZP_06377918.1| putative cell division protein FtsH [Staphylococcus aureus subsp.
           aureus 132]
 gi|294850371|ref|ZP_06791104.1| cell division protease FtsH [Staphylococcus aureus A9754]
 gi|304380529|ref|ZP_07363205.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|57285573|gb|AAW37667.1| cell division protein FtsH, putative [Staphylococcus aureus subsp.
           aureus COL]
 gi|87127508|gb|ABD22022.1| putative cell division protein FtsH [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|150373485|dbj|BAF66745.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|160367560|gb|ABX28531.1| cell division protein FtsH [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|257859494|gb|EEV82347.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus A5948]
 gi|259161931|gb|EEW46514.1| cell-division protein [Staphylococcus aureus D30]
 gi|269940082|emb|CBI48458.1| putative cell division protein [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282592490|gb|EFB97502.1| cell division protease FtsH [Staphylococcus aureus A9765]
 gi|294822795|gb|EFG39231.1| cell division protease FtsH [Staphylococcus aureus A9754]
 gi|304340933|gb|EFM06857.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|315196194|gb|EFU26550.1| cell division protein FtsH [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320139402|gb|EFW31280.1| ATP-dependent metallopeptidase HflB [Staphylococcus aureus subsp.
           aureus MRSA131]
 gi|320144179|gb|EFW35947.1| ATP-dependent metallopeptidase HflB [Staphylococcus aureus subsp.
           aureus MRSA177]
 gi|329313230|gb|AEB87643.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus T0131]
          Length = 697

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E G  F S SG       V   A  +  L  N +     +
Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEMFVGVGASRVRDLFDNAKKNAPCI 260

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 261 IFIDEI 266


>gi|28574716|ref|NP_787969.1| cutlet [Drosophila melanogaster]
 gi|28380272|gb|AAN10380.2| cutlet [Drosophila melanogaster]
          Length = 993

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 17/27 (62%), Positives = 18/27 (66%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFR 83
            L  GPPGLGKTTLA  +AR  G N R
Sbjct: 423 ALLCGPPGLGKTTLAHTIARHAGYNVR 449


>gi|118581016|ref|YP_902266.1| ATP-dependent protease La [Pelobacter propionicus DSM 2379]
 gi|118503726|gb|ABL00209.1| ATP-dependent proteinase, Serine peptidase, MEROPS family S16
           [Pelobacter propionicus DSM 2379]
          Length = 823

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 90/227 (39%), Gaps = 49/227 (21%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA---GDLAALLTNLEDR------ 106
           + FVGPPG+GKT+L + +AR +   F R + G V  +A   G     +  L  R      
Sbjct: 364 LCFVGPPGVGKTSLGKSIARAMNRKFVRISLGGVRDEAEIRGHRRTYIGALPGRIIQGMK 423

Query: 107 ------DVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152
                  V  +DE+ +L        S  + E+L P       D  + +         NLS
Sbjct: 424 QAGTNNPVFMLDELDKLGYDYKGDPSSALLEVLDPEQNHSFSDHYINQ-------PYNLS 476

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL---------KTIVQRGAKLTGLAV 203
               IA   ++  + + L+DR  +     + E E L         + + + G K   +A 
Sbjct: 477 NVMFIATANQIDPVPSALRDRMEVITLSGYTEEEKLEISRRFLVPRQMKENGLKEKNIAF 536

Query: 204 TDEAACEIAMRS------RGTPRIAGRLLRRV-RDFAEVAHAKTITR 243
            DEA  EI  +       R   R  G + R+V R  AE    K ITR
Sbjct: 537 DDEAIAEIIAKYTREAGLRNLEREIGTVCRKVARKVAE--GQKRITR 581


>gi|114567578|ref|YP_754732.1| ATPase [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
 gi|114338513|gb|ABI69361.1| ATPases of the AAA+ class-like protein [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
          Length = 365

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 94/219 (42%), Gaps = 52/219 (23%)

Query: 56  HVLFVGPPGLGKTTLAQVVAR---ELGVNFR------STSGPVIAKAGDLAALLTNLEDR 106
           H+ F G PG GKTT+A++V R   ++G+  +      S +  +    G  A  +  + ++
Sbjct: 144 HLAFTGKPGTGKTTVARIVGRVYKQIGLLTKGHFIEVSRTDLIAGYQGQTALKVRKVIEK 203

Query: 107 ---DVLFIDEIHRLS-----------IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152
               VLFIDE + ++            + E  L  A+ED++ DL+V              
Sbjct: 204 AKGGVLFIDEAYSITENDHSDSYGRECLTE--LTKALEDYRDDLVV-------------- 247

Query: 153 RFTLIAATT---RVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAA 208
              ++A  T        +NP L+ RF   I  + Y  ++L+ I+    K     +++EA 
Sbjct: 248 ---IVAGYTEPMNKFFESNPGLKSRFNTFIEFDDYTSDELEEILTMMCKNNDYILSEEAR 304

Query: 209 CEIA------MRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
             I       + ++      GRL+R + D   + HAK +
Sbjct: 305 SRIKQALNNHVAAKDDHFANGRLVRNIYDDIVMNHAKRV 343


>gi|71756209|ref|XP_829019.1| replication factor C subunit 4 [Trypanosoma brucei TREU927]
 gi|70834405|gb|EAN79907.1| replication factor C, subunit 4, putative [Trypanosoma brucei]
 gi|261334959|emb|CBH17953.1| replication factor C, subunit 4, putative [Trypanosoma brucei
          gambiense DAL972]
          Length = 341

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP ++E+  G  +A + L+V      AR   L ++L  GPPG GKTT    +AR L
Sbjct: 13 RPMSMEDIVGNADAVARLQVI-----AREGNLPNLLLCGPPGTGKTTSMLCLARSL 63


>gi|23014985|ref|ZP_00054777.1| COG1219: ATP-dependent protease Clp, ATPase subunit
           [Magnetospirillum magnetotacticum MS-1]
          Length = 422

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+         
Sbjct: 111 AKSNILLIGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAAE 170

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDE+ ++S
Sbjct: 171 YNVERAQRGIVYIDEVDKIS 190


>gi|330914443|ref|XP_003296642.1| hypothetical protein PTT_06788 [Pyrenophora teres f. teres 0-1]
 gi|311331120|gb|EFQ95258.1| hypothetical protein PTT_06788 [Pyrenophora teres f. teres 0-1]
          Length = 925

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 69/163 (42%), Gaps = 33/163 (20%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTS-GPVIAKA----------GDLAALLTNLED 105
           +L VGPPG+GKT+LA+ VA  LG  F   S G V  +A            +  L+ N   
Sbjct: 478 LLLVGPPGVGKTSLAKSVATALGRKFHRISLGGVRDEAEIRGHRRTYVAAMPGLIVNGLK 537

Query: 106 R-----DVLFIDEIHRLSIIVE---------EILYPAMEDFQLDLMVGEGPSARSVKINL 151
           +      V  +DEI +L ++           E+L P       D  V       ++ I+L
Sbjct: 538 KVGVANPVFLLDEIDKLGMMNHNGDPGAAMLEVLDPEQNHTFTDHYV-------NIPIDL 590

Query: 152 SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           S+   IA    +  +  PL DR    I+L+ Y   + + I  R
Sbjct: 591 SKVLFIATANSLDTIPPPLLDRMET-IQLSGYTTLEKRHIAAR 632


>gi|298693841|gb|ADI97063.1| cell division protein FtsH, putative [Staphylococcus aureus subsp.
           aureus ED133]
 gi|323438743|gb|EGA96483.1| cell division protein [Staphylococcus aureus O11]
 gi|323442045|gb|EGA99680.1| cell division protein [Staphylococcus aureus O46]
          Length = 697

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E G  F S SG       V   A  +  L  N +     +
Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEMFVGVGASRVRDLFDNAKKNAPCI 260

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 261 IFIDEI 266


>gi|297848920|ref|XP_002892341.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297338183|gb|EFH68600.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 685

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 256 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 286


>gi|292656819|ref|YP_003536716.1| cell division control protein 48 [Haloferax volcanii DS2]
 gi|291371169|gb|ADE03396.1| cell division control protein 48 [Haloferax volcanii DS2]
          Length = 754

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 23/34 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL  GPPG GKT +A+ VA E+  +F + SGP I
Sbjct: 227 VLLHGPPGTGKTLIAKAVANEIDASFHTISGPEI 260



 Score = 40.0 bits (92), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 20/37 (54%), Positives = 22/37 (59%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +A   VL  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 495 DAAKGVLMYGPPGTGKTLLAKAVANEAESNFISIKGP 531


>gi|282915829|ref|ZP_06323597.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus
           D139]
 gi|282320320|gb|EFB50662.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus
           D139]
          Length = 697

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E G  F S SG       V   A  +  L  N +     +
Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEMFVGVGASRVRDLFDNAKKNAPCI 260

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 261 IFIDEI 266


>gi|297545179|ref|YP_003677481.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296842954|gb|ADH61470.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 510

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 52/121 (42%), Gaps = 16/121 (13%)

Query: 10  RNVSQEDADISLLRPR-TLEEFTGQVEACSNLKVFIE-------AAKARAEALDHVLFVG 61
            N+++   D S  +   T ++  G  E    LKV I+         K  A+    +LF G
Sbjct: 65  NNITEAKEDTSHRKNNITFKDVAGLDEVIDELKVIIDFMTNTEKYNKMGAKIPKGILFYG 124

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DVLFIDE 113
           PPG GKT LA  +A E    F S SG       V   A  + AL    +     ++FIDE
Sbjct: 125 PPGTGKTLLATALAGETNSTFISASGSEFVEKYVGVGASRIRALFAKAKKSTPSIIFIDE 184

Query: 114 I 114
           I
Sbjct: 185 I 185


>gi|229829756|ref|ZP_04455825.1| hypothetical protein GCWU000342_01853 [Shuttleworthia satelles DSM
           14600]
 gi|229791745|gb|EEP27859.1| hypothetical protein GCWU000342_01853 [Shuttleworthia satelles DSM
           14600]
          Length = 633

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           V+ VGPPG GKT LA+ VA E GV F S SG
Sbjct: 212 VILVGPPGTGKTLLAKAVAGEAGVPFFSISG 242


>gi|282600857|ref|ZP_05979925.2| ATP-dependent metalloprotease FtsH [Subdoligranulum variabile DSM
           15176]
 gi|282571161|gb|EFB76696.1| ATP-dependent metalloprotease FtsH [Subdoligranulum variabile DSM
           15176]
          Length = 681

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 52/107 (48%), Gaps = 15/107 (14%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAE------ALDH-VLFVGPPGLGKTTLAQVVA 75
           R  T  +  G  E  + L+  +E  KA  +       + H VL VGPPG GKT LA+  A
Sbjct: 184 RKATFADVAGADEEKAELQEVVEFLKAPGKFNSLGARIPHGVLLVGPPGTGKTLLARACA 243

Query: 76  RELGVNFRSTSGP--VIAKAGDLAALLTNLEDR------DVLFIDEI 114
            E GV F + SG   V    G  A+ + +L ++       ++FIDEI
Sbjct: 244 GEAGVPFYAISGSDFVEMYVGVGASRVRDLFEKAKKTMPSIVFIDEI 290


>gi|219117131|ref|XP_002179360.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217409251|gb|EEC49183.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 485

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 26/53 (49%), Positives = 30/53 (56%), Gaps = 6/53 (11%)

Query: 30  FTGQV---EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
             GQV   EAC  +   I+A K    AL   L VGPPG GKT LA  +A+ELG
Sbjct: 55  LVGQVPAREACGLVVDLIQAQKLAGRAL---LLVGPPGTGKTALALAMAKELG 104


>gi|167574957|ref|ZP_02367831.1| ATP-dependent metalloprotease, FtsH family protein [Burkholderia
           oklahomensis C6786]
          Length = 657

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL VG PG GKT LA+ VA E GV F STSG    +   G  AA + +L ++       +
Sbjct: 206 VLIVGAPGTGKTLLAKAVAGEAGVPFFSTSGSSFVEMFVGVGAARVRDLFEQAQQKAPCI 265

Query: 109 LFIDEI 114
           +FIDE+
Sbjct: 266 IFIDEL 271


>gi|149178490|ref|ZP_01857079.1| hypothetical protein PM8797T_19697 [Planctomyces maris DSM 8797]
 gi|148842703|gb|EDL57077.1| hypothetical protein PM8797T_19697 [Planctomyces maris DSM 8797]
          Length = 1776

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 1/73 (1%)

Query: 20   SLLRPRTLEEFTGQVEACSNLKVFIEAAK-ARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
            S +R R L+E    V   +  K   EA +  R + +  ++ V PPG GKTTL + +A  L
Sbjct: 1240 SFVRNRLLDEVYLPVIGDNLAKQMGEAGENKRTDRMGLLMLVSPPGYGKTTLMEYIANRL 1299

Query: 79   GVNFRSTSGPVIA 91
            G+ F   +GP + 
Sbjct: 1300 GIIFMKINGPALG 1312


>gi|156095797|ref|XP_001613933.1| cell division protein FtsH [Plasmodium vivax SaI-1]
 gi|148802807|gb|EDL44206.1| cell division protein FtsH, putative [Plasmodium vivax]
          Length = 896

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL VGPPG GKT LA+ VA E  V +  TSGP
Sbjct: 197 VLLVGPPGSGKTMLARAVATEANVPYIYTSGP 228


>gi|6692685|gb|AAF24819.1|AC007592_12 F12K11.22 [Arabidopsis thaliana]
          Length = 662

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 256 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 286


>gi|39938720|ref|NP_950486.1| hypothetical protein PAM_234 [Onion yellows phytoplasma OY-M]
 gi|39721829|dbj|BAD04319.1| hypothetical protein [Onion yellows phytoplasma OY-M]
          Length = 224

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 88/193 (45%), Gaps = 16/193 (8%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           +L  GPPG GKT L + +A E   +F + SG    +   GD A  + +L ++       +
Sbjct: 35  ILLYGPPGTGKTLLVKALAGESDSSFYAFSGTDFLQRIHGDGAKKVRDLFEKTKTHKTSI 94

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +FIDEI    I   +      E     L   +G  ++    N +   +IAAT RV  L +
Sbjct: 95  IFIDEIDSFGIARNDFSQKEKEITTELLNQMDGIKSKD---NENNVIVIAATNRVESLDS 151

Query: 169 PL--QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
            L    RF   + +   +++  K I++  AK   +A  D    ++A  ++G   ++G  L
Sbjct: 152 ALLRPGRFDYVVNVLLPDLKARKAILKLCAKGKQIADEDINLEQLAQETQG---LSGAQL 208

Query: 227 RRVRDFAEVAHAK 239
           + + + A +  A+
Sbjct: 209 KAILNEASMLQAE 221


>gi|113477982|ref|YP_724043.1| FtsH peptidase [Trichodesmium erythraeum IMS101]
 gi|110169030|gb|ABG53570.1| FtsH peptidase homologue, chloroplast. Metallo peptidase. MEROPS
           family M41 [Trichodesmium erythraeum IMS101]
          Length = 628

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 209 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 239


>gi|328779626|ref|XP_393943.4| PREDICTED: ATPase WRNIP1-like [Apis mellifera]
          Length = 426

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 67/149 (44%), Gaps = 14/149 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV---VAREL 78
           +RP    ++ GQ E        ++    +   +  ++F GPPG GKT+L  +   +++E+
Sbjct: 1   MRPACFHDYIGQ-EKVVGSNTILQQLLTKGH-IPSMIFWGPPGCGKTSLTNIISKISKEM 58

Query: 79  G------VNFRSTSGPVIAKAGDLAALLTNLE-DRDVLFIDEIHRLSIIVEEILYPAME- 130
                  +N  +TS  V      +    T  + ++ ++ +D+IHR + + ++I  P +E 
Sbjct: 59  HGEKVNIINLSATSSGVSNIKNIINKTKTESKFNQIIVIMDKIHRFNKLQQDIFLPHVET 118

Query: 131 -DFQLDLMVGEGPSARSVKINLSRFTLIA 158
             F L     E PS       LSR  + A
Sbjct: 119 GTFTLIGTTTENPSYSLNSALLSRCRIFA 147


>gi|325125153|gb|ADY84483.1| Cell division protein [Lactobacillus delbrueckii subsp. bulgaricus
           2038]
          Length = 737

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108
           VL  GPPG GKT LA+ VA E GV F   SG       V   A  +  L TN +     +
Sbjct: 225 VLLEGPPGTGKTLLAKAVAGEAGVPFFYISGSDFVEMFVGVGASRVRDLFTNAKKNAPSI 284

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 285 IFIDEI 290


>gi|322493640|emb|CBZ28930.1| AAA family ATPase-like protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 786

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDRD------V 108
           VL  GPPG  KT LA+ +A E  +NF S  GP V +K  GD    + ++ +R       V
Sbjct: 554 VLLYGPPGCSKTMLAKALANESHMNFISVKGPEVFSKWVGDSEKAVRDIFERARAASPCV 613

Query: 109 LFIDEI 114
           +FIDE+
Sbjct: 614 VFIDEL 619


>gi|302750402|gb|ADL64579.1| cell-division protein (ATP-dependent Zn metallopeptidase)
           [Staphylococcus aureus subsp. aureus str. JKD6008]
          Length = 667

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E G  F S SG       V   A  +  L  N +     +
Sbjct: 171 VLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEMFVGVGASRVRDLFDNAKKNAPCI 230

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 231 IFIDEI 236


>gi|296118973|ref|ZP_06837546.1| cell division protein FtsH [Corynebacterium ammoniagenes DSM 20306]
 gi|295968071|gb|EFG81323.1| cell division protein FtsH [Corynebacterium ammoniagenes DSM 20306]
          Length = 853

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 34/69 (49%), Gaps = 7/69 (10%)

Query: 26  TLEEFTGQVEACSNL---KVFIEAAKAR----AEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T E+  G  EA   L   K F+E         A+    VL  GPPG GKT LA+ VA E 
Sbjct: 165 TFEDVAGADEAVDELQEIKDFLEDPSRYHELGAKIPRGVLLYGPPGTGKTLLARAVAGEA 224

Query: 79  GVNFRSTSG 87
           GV F S SG
Sbjct: 225 GVPFYSISG 233


>gi|270012364|gb|EFA08812.1| hypothetical protein TcasGA2_TC006507 [Tribolium castaneum]
          Length = 821

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 48/96 (50%), Gaps = 15/96 (15%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD---LAALLTNLEDRDVL--FID 112
           L  GPPGLGKTTLA +VAR  G N       V   A D     A  T LE+   +   +D
Sbjct: 296 LLCGPPGLGKTTLAHMVARHAGYNV------VEVNASDDRSCEAFKTALENATQMRSVVD 349

Query: 113 EIHRLSIIV-EEI--LYPAMEDFQLDLMVGEGPSAR 145
           +  R + +V +EI    P+  D+ +  + G GPS R
Sbjct: 350 QERRPNCLVFDEIDGAPPSSIDYLVKFVQG-GPSGR 384


>gi|300023468|ref|YP_003756079.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299525289|gb|ADJ23758.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 415

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L VGP G GKT LAQ +AR L V F       + +AG +   + N+         
Sbjct: 105 AKSNILLVGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSAD 164

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDE+ ++S
Sbjct: 165 YNVERAQRGIVYIDEVDKIS 184


>gi|213966429|ref|ZP_03394606.1| DNA polymerase III subunit gamma/tau [Corynebacterium amycolatum
          SK46]
 gi|213950922|gb|EEB62327.1| DNA polymerase III subunit gamma/tau [Corynebacterium amycolatum
          SK46]
          Length = 944

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 7/81 (8%)

Query: 22 LRPRTLEEFTGQVEACSNLKVFIEA--AKARAEALDHV-LFVGPPGLGKTTLAQVVAREL 78
           RP +  E  GQ      L   +E+  A+ R   ++H  LF GP G GKT+ A+++AR L
Sbjct: 7  YRPASFAEVVGQRHVTDPLSAALESRDAQGRPNRINHAYLFSGPRGCGKTSSARIMARSL 66

Query: 79 GVNFRSTSGPVIAKAGDLAAL 99
                  GP     G  A+ 
Sbjct: 67 NC----AEGPTATPCGQCASC 83


>gi|210613790|ref|ZP_03289904.1| hypothetical protein CLONEX_02115 [Clostridium nexile DSM 1787]
 gi|210150999|gb|EEA82007.1| hypothetical protein CLONEX_02115 [Clostridium nexile DSM 1787]
          Length = 605

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F + SG
Sbjct: 193 VLLVGPPGTGKTLLAKAVAGEAGVPFFTISG 223


>gi|226498812|ref|NP_001149810.1| katanin p60 ATPase-containing subunit [Zea mays]
 gi|195634807|gb|ACG36872.1| katanin p60 ATPase-containing subunit [Zea mays]
          Length = 518

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLED------RDV 108
           VL  GPPG GKT LA+ VA E G  F + S   +A    G+   ++  L D         
Sbjct: 270 VLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPST 329

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 330 IFIDEIDSL 338


>gi|209523843|ref|ZP_03272396.1| ATP-dependent metalloprotease FtsH [Arthrospira maxima CS-328]
 gi|209495875|gb|EDZ96177.1| ATP-dependent metalloprotease FtsH [Arthrospira maxima CS-328]
          Length = 629

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 210 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 240


>gi|195576414|ref|XP_002078071.1| GD22729 [Drosophila simulans]
 gi|194190080|gb|EDX03656.1| GD22729 [Drosophila simulans]
          Length = 978

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 17/27 (62%), Positives = 18/27 (66%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFR 83
            L  GPPGLGKTTLA  +AR  G N R
Sbjct: 423 ALLCGPPGLGKTTLAHTIARHAGYNVR 449


>gi|82750218|ref|YP_415959.1| cell division protein [Staphylococcus aureus RF122]
 gi|82655749|emb|CAI80148.1| cell division protein [Staphylococcus aureus RF122]
          Length = 697

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E G  F S SG       V   A  +  L  N +     +
Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGAPFLSISGSDFVEMFVGVGASRVRDLFDNAKKNAPCI 260

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 261 IFIDEI 266


>gi|332712424|ref|ZP_08432351.1| membrane protease FtsH catalytic subunit [Lyngbya majuscula 3L]
 gi|332348898|gb|EGJ28511.1| membrane protease FtsH catalytic subunit [Lyngbya majuscula 3L]
          Length = 510

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 91  VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 121


>gi|323703641|ref|ZP_08115284.1| Sigma 54 interacting domain protein [Desulfotomaculum nigrificans
           DSM 574]
 gi|323531413|gb|EGB21309.1| Sigma 54 interacting domain protein [Desulfotomaculum nigrificans
           DSM 574]
          Length = 571

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 12/97 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  +E  GQ E   +L+  +     +     HVL  GPPG+GKT  A++V  E     
Sbjct: 68  RPKNFDEIIGQEEGLRSLRAALCGPNPQ-----HVLIYGPPGVGKTAAARLVLEEAK--- 119

Query: 83  RSTSGPVIAKAG--DLAALLTNLEDRDVL--FIDEIH 115
           +S S P   KA   +L A     ++R +    I  +H
Sbjct: 120 KSPSSPFKEKAKFIELDATTARFDERGIADPLIGSVH 156


>gi|312872227|ref|ZP_07732300.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners
          LEAF 2062A-h1]
 gi|311092311|gb|EFQ50682.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners
          LEAF 2062A-h1]
          Length = 587

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 6/77 (7%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
          RPRT E   GQ   C  L+  I+  K     + H  LF GP G GKT+ A++ A+ +   
Sbjct: 15 RPRTFEAVVGQSAICDTLRNSIKRHK-----ISHAFLFSGPRGTGKTSCAKIFAKAINCM 69

Query: 82 FRSTSGPVIAKAGDLAA 98
                P    +  LAA
Sbjct: 70 DSKDGEPCNQCSNCLAA 86


>gi|307261755|ref|ZP_07543421.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306868573|gb|EFN00384.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 419

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LA+ +AR L V F       + +AG +   + N+            
Sbjct: 118 NILLIGPTGSGKTLLAETLARRLNVPFAVADATTLTQAGYVGEDVENVIQKLLMKCDFDA 177

Query: 104 --EDRDVLFIDEIHRLS 118
              +R ++FIDEI +++
Sbjct: 178 EQAERGIVFIDEIDKIT 194


>gi|301618395|ref|XP_002938599.1| PREDICTED: lon protease homolog, mitochondrial-like [Xenopus
           (Silurana) tropicalis]
          Length = 970

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 76/187 (40%), Gaps = 32/187 (17%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLA 71
           SQE+ D+        E+  G  +    +  FI  ++ R      +L F GPPG+GKT++A
Sbjct: 497 SQENLDLRRAEEVLEEDHYGMEDVKKRILEFIAVSQLRGSTQGKILCFYGPPGVGKTSIA 556

Query: 72  QVVARELGVN-FRSTSGP--------------VIAKAGDLAALLTNLEDRD-VLFIDEIH 115
           + +AR L    FR + G               V A  G +   L   +  + ++ IDE+ 
Sbjct: 557 RSIARALNREYFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLILIDEVD 616

Query: 116 RL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           +L        S  + E+L P      LD  +        V ++LS+   I        + 
Sbjct: 617 KLGRGYQGDPSSALLELLDPEQNSNFLDHYL-------DVPVDLSKVLFICTANVTETIP 669

Query: 168 NPLQDRF 174
            PL+DR 
Sbjct: 670 EPLRDRM 676


>gi|302822268|ref|XP_002992793.1| hypothetical protein SELMODRAFT_135916 [Selaginella moellendorffii]
 gi|300139438|gb|EFJ06179.1| hypothetical protein SELMODRAFT_135916 [Selaginella moellendorffii]
          Length = 518

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLED------RDV 108
           VL  GPPG GKT LA+ VA E G  F + S   +A    G+   ++  L D         
Sbjct: 273 VLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPST 332

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 333 IFIDEIDSL 341


>gi|284051382|ref|ZP_06381592.1| FtsH peptidase [Arthrospira platensis str. Paraca]
          Length = 634

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 210 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 240


>gi|261415784|ref|YP_003249467.1| ATP-dependent protease La [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261372240|gb|ACX74985.1| ATP-dependent protease La [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302327636|gb|ADL26837.1| endopeptidase La [Fibrobacter succinogenes subsp. succinogenes S85]
          Length = 789

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 95/219 (43%), Gaps = 43/219 (19%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA---GDLAALLTNLEDR------ 106
           +  VGPPG+GKTTL + +A  +  NF R T G V  +A   G     +  +  R      
Sbjct: 351 LCLVGPPGVGKTTLVESIATAMQRNFVRITLGGVRDEAEIRGHRRTYIGAMPGRFIHALR 410

Query: 107 ------DVLFIDEIHRL--------SIIVEEILYPAM-EDFQLDLMVGEGPSARSVKINL 151
                  V+ +DEI ++        +  + E+L P    DF    M         V ++L
Sbjct: 411 RAKCMNPVILLDEIDKMASDFRGDPASAMLEVLDPEQNHDFTDHFM--------EVGLDL 462

Query: 152 SRFTLIAATTRVGLLTNPLQDRFGIPIRL-NFYEIEDL----KTIVQRGAKLTGLAVTDE 206
           SR   IA     G +   L+DR  + +RL  +Y  E L    K ++ R  + TG+ + ++
Sbjct: 463 SRVLFIATANSEGEIPEALRDRMEV-VRLPGYYPHEKLQIAGKYLLPRICERTGVKLGEQ 521

Query: 207 AACEIAMRS---RGTPRIAG-RLLRRVRDFAEVAHAKTI 241
            +    M +   RG  R AG R L RV + A    AK I
Sbjct: 522 VSFSDEMINAVMRGWTREAGVRELERVLESAVRHRAKDI 560


>gi|255722075|ref|XP_002545972.1| ATPase family AAA domain-containing protein 1-A [Candida tropicalis
           MYA-3404]
 gi|240136461|gb|EER36014.1| ATPase family AAA domain-containing protein 1-A [Candida tropicalis
           MYA-3404]
          Length = 364

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 32/66 (48%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--------AKAGDLAALLTNLEDRDV 108
           VLF GPPG GKT LA+ +A+E G  F S     I         K  D    L N     +
Sbjct: 137 VLFYGPPGCGKTMLAKAIAKESGAFFLSIRMSSIMDKWYGESNKITDAIFSLANKLQPCI 196

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 197 IFIDEI 202


>gi|295658083|ref|XP_002789604.1| replication factor C subunit 3 [Paracoccidioides brasiliensis Pb01]
 gi|226283157|gb|EEH38723.1| replication factor C subunit 3 [Paracoccidioides brasiliensis Pb01]
          Length = 404

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           RP +LE+ +G  +    +  FI++ +     L H+L  GPPG GKT+    +AR +
Sbjct: 52  RPNSLEDVSGHHDVIGTINTFIDSNR-----LPHLLLYGPPGTGKTSTILALARRI 102


>gi|218961380|ref|YP_001741155.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Candidatus Cloacamonas acidaminovorans]
 gi|167730037|emb|CAO80949.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Candidatus Cloacamonas acidaminovorans]
          Length = 415

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT +AQ +AR L V F  +    + +AG    D+  +L  L        
Sbjct: 106 NILMIGPTGSGKTLIAQTLARFLQVPFAISDATTLTEAGYVGEDVENILVRLLQNANYDV 165

Query: 104 --EDRDVLFIDEIHRLS 118
              +R +++IDEI ++S
Sbjct: 166 ARAERGIVYIDEIDKIS 182


>gi|159028508|emb|CAO87315.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 628

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 209 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 239


>gi|66047171|ref|YP_237012.1| peptidase S16, ATP-dependent protease La [Pseudomonas syringae pv.
           syringae B728a]
 gi|63257878|gb|AAY38974.1| Peptidase S16, ATP-dependent protease La [Pseudomonas syringae pv.
           syringae B728a]
 gi|330973039|gb|EGH73105.1| peptidase S16, ATP-dependent protease La [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 805

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 86/215 (40%), Gaps = 53/215 (24%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAKAGDLAALLT 101
           VL VGPPG+GKT++ + +A  LG  F   S                 + A+ G L   L 
Sbjct: 387 VLLVGPPGVGKTSVGRSIAESLGRPFYRLSVGGMRDEAEIKGHRRTYIGAQPGKLVQALK 446

Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAME----DFQLDLMVGEGPSARSVK 148
           ++E  + V+ +DEI ++    +        E L P       D  LDL           +
Sbjct: 447 DVEVMNPVIMLDEIDKMGQSYQGDPASALLETLDPEQNVEFLDHYLDL-----------R 495

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR----------GAKL 198
           ++LS+   +     +  +  PL DR  + IRL+ Y  E+   I +R          G   
Sbjct: 496 LDLSKVLFVCTANTLDSIPGPLLDRMEV-IRLSGYITEEKLAIAKRHLWPKQLAKAGVAK 554

Query: 199 TGLAVTDE---AACEIAMRSRGTPRIAGRLLRRVR 230
             L+++D    A  E   R  G   +  +L + VR
Sbjct: 555 NKLSISDSALRAVIEGYAREAGVRHLEKQLGKLVR 589


>gi|55981080|ref|YP_144377.1| alternative ATP-dependent protease La [Thermus thermophilus HB8]
 gi|55772493|dbj|BAD70934.1| alternative ATP-dependent protease La (Lon protease) [Thermus
           thermophilus HB8]
          Length = 804

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 84/227 (37%), Gaps = 51/227 (22%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD----------------LAALL 100
           +LFVGPPG+GKT++A+ +A  LG  +   S   +    D                +  L 
Sbjct: 358 LLFVGPPGVGKTSIAKSIAEALGRKYVRVSLGGVRDESDIRGHRRTYIGAMPGRIIQGLR 417

Query: 101 TNLEDRDVLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLS 152
                  V  +DE+ +L I  +        E+L PA     +D  +G       V  +LS
Sbjct: 418 QAGTKNPVFLLDEVDKLGISYQGDPAAALLEVLDPAQNKEFVDHYLG-------VPFDLS 470

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFY-EIEDL----KTIVQRGAKLTGLAVTDEA 207
               I        +  PL DR   PI    Y E E L    + ++ R  K  GL      
Sbjct: 471 EVMFICTANFPQNIPAPLYDRME-PIEFTSYTEQEKLEIAKRYLLPRQLKENGLEPEQVV 529

Query: 208 ACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
             E A            L R +  +   A  + + REI   ALLR A
Sbjct: 530 VTEAA------------LTRLITHYTREAGVRQLEREI--GALLRKA 562


>gi|52075839|dbj|BAD45447.1| putative chloroplast protease [Oryza sativa Japonica Group]
          Length = 472

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
          VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 46 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 76


>gi|115439215|ref|NP_001043887.1| Os01g0683100 [Oryza sativa Japonica Group]
 gi|19386661|dbj|BAB86043.1| putative katanin [Oryza sativa Japonica Group]
 gi|21644706|dbj|BAC01262.1| putative katanin [Oryza sativa Japonica Group]
 gi|32966063|gb|AAP92128.1| putative ATPase ATP1 [Oryza sativa]
 gi|113533418|dbj|BAF05801.1| Os01g0683100 [Oryza sativa Japonica Group]
 gi|125571595|gb|EAZ13110.1| hypothetical protein OsJ_03030 [Oryza sativa Japonica Group]
 gi|215697345|dbj|BAG91339.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 519

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLED------RDV 108
           VL  GPPG GKT LA+ VA E G  F + S   +A    G+   ++  L D         
Sbjct: 271 VLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARFYAPST 330

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 331 IFIDEIDSL 339


>gi|260062280|ref|YP_003195360.1| methanol dehydrogenase regulator [Robiginitalea biformata HTCC2501]
 gi|88783842|gb|EAR15013.1| methanol dehydrogenase regulator [Robiginitalea biformata HTCC2501]
          Length = 317

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 64/153 (41%), Gaps = 21/153 (13%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFI---- 111
           H L +G PGL KT +   +A+ LG++F+           D+       ++R+ +F+    
Sbjct: 44  HSLLIGVPGLAKTLMVNTIAQTLGLDFKRIQFTPDLMPSDILGSEVLDQNRNFIFVKGPV 103

Query: 112 -------DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164
                  DEI+R     +  L  AM++  + +      + +  K++   F L        
Sbjct: 104 FANIILADEINRTPPKTQAALLEAMQERAVTI------TGKQYKLDQPYFVLATQNPIEQ 157

Query: 165 LLTNPLQ----DRFGIPIRLNFYEIEDLKTIVQ 193
             T PL     DRF   I L +  +E+  T+VQ
Sbjct: 158 EGTYPLPEAQLDRFMFAIELKYPSVEEEITVVQ 190


>gi|332026996|gb|EGI67092.1| Katanin p60 ATPase-containing subunit A-like 1 [Acromyrmex
           echinatior]
          Length = 507

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108
           VL VGPPG GKT LA+ VA E G  F + S   +     G+   L      +        
Sbjct: 263 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPST 322

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 323 IFIDEIDSL 331


>gi|325663695|ref|ZP_08152099.1| hypothetical protein HMPREF0490_02840 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|331087217|ref|ZP_08336287.1| hypothetical protein HMPREF0987_02590 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|325470188|gb|EGC73421.1| hypothetical protein HMPREF0490_02840 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|330408903|gb|EGG88364.1| hypothetical protein HMPREF0987_02590 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 609

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F + SG
Sbjct: 201 VLLVGPPGTGKTLLAKAVAGEAGVPFFTISG 231


>gi|323449509|gb|EGB05397.1| hypothetical protein AURANDRAFT_1128 [Aureococcus anophagefferens]
          Length = 492

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 13/70 (18%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRD 107
           + R     H LF GPPG GKT  A+ +A   G+++       +A  GD+A L      RD
Sbjct: 256 RKRGAVFRHCLFYGPPGTGKTLFAKKLAANAGMDY------AVASGGDVAPL-----GRD 304

Query: 108 VLFIDEIHRL 117
              + E+H+L
Sbjct: 305 A--VTEMHKL 312


>gi|307215082|gb|EFN89889.1| Katanin p60 ATPase-containing subunit A1 [Harpegnathos saltator]
          Length = 504

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA-----KAGDLAALLTNLED---RDV 108
           VL VGPPG GKT LA+ VA E G  F + S   +      ++  L  LL  +        
Sbjct: 260 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPST 319

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 320 IFIDEIDSL 328


>gi|307250530|ref|ZP_07532474.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306857423|gb|EFM89535.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
          Length = 419

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LA+ +AR L V F       + +AG +   + N+            
Sbjct: 118 NILLIGPTGSGKTLLAETLARRLNVPFAVADATTLTQAGYVGEDVENVIQKLLMKCDFDA 177

Query: 104 --EDRDVLFIDEIHRLS 118
              +R ++FIDEI +++
Sbjct: 178 EQAERGIVFIDEIDKIT 194


>gi|294672833|ref|YP_003573449.1| ATP-dependent metalloprotease FtsH [Prevotella ruminicola 23]
 gi|294473889|gb|ADE83278.1| putative ATP-dependent metalloprotease FtsH [Prevotella ruminicola
           23]
          Length = 673

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 34/65 (52%), Gaps = 8/65 (12%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VL 109
           L VGPPG GKT LA+ VA E GV F S SG       V   A  +  L    + +   ++
Sbjct: 222 LLVGPPGTGKTLLAKAVAGEAGVPFFSMSGSDFVEMFVGVGASRVRDLFQQAKTKSPCII 281

Query: 110 FIDEI 114
           FIDEI
Sbjct: 282 FIDEI 286


>gi|290890959|ref|ZP_06554023.1| hypothetical protein AWRIB429_1413 [Oenococcus oeni AWRIB429]
 gi|290479358|gb|EFD88018.1| hypothetical protein AWRIB429_1413 [Oenococcus oeni AWRIB429]
          Length = 594

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 23/114 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVAREL-GV 80
           RPRT  +  GQ      L+  +++ K     + H  LF GP G GKT++A++ ARE+ G+
Sbjct: 10  RPRTFSDLVGQTVIAQTLENALKSNK-----VGHAYLFAGPRGTGKTSVAKIFAREIEGI 64

Query: 81  ---NFRSTSGPVI---AKAGDLAALLTNLEDR----------DVLFIDEIHRLS 118
              N R +   +I   A + +    + NL D            +  IDE+H LS
Sbjct: 65  PDDNNRESFSDIIEIDAASNNGVDEIRNLRDAANYAPIEYQFKIYIIDEVHMLS 118


>gi|242371659|ref|ZP_04817233.1| cell division protein FtsH [Staphylococcus epidermidis M23864:W1]
 gi|242350608|gb|EES42209.1| cell division protein FtsH [Staphylococcus epidermidis M23864:W1]
          Length = 709

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E G  F S SG       V   A  +  L  N +     +
Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 260

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 261 IFIDEI 266


>gi|238922947|ref|YP_002936460.1| ATP-dependent metalloprotease FtsH [Eubacterium rectale ATCC 33656]
 gi|238874619|gb|ACR74326.1| ATP-dependent metalloprotease FtsH [Eubacterium rectale ATCC 33656]
          Length = 609

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F + SG
Sbjct: 193 VLLVGPPGTGKTLLAKAVAGEAGVPFFTISG 223


>gi|224128696|ref|XP_002320396.1| predicted protein [Populus trichocarpa]
 gi|222861169|gb|EEE98711.1| predicted protein [Populus trichocarpa]
          Length = 684

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 297


>gi|220909618|ref|YP_002484929.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7425]
 gi|219866229|gb|ACL46568.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7425]
          Length = 632

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 213 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 243


>gi|239917501|ref|YP_002957059.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Micrococcus
           luteus NCTC 2665]
 gi|259491263|sp|C5CAX2|CLPX_MICLC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|239838708|gb|ACS30505.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Micrococcus
           luteus NCTC 2665]
          Length = 432

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDV 108
           ++L VGP G GKT LAQ +AR L V F       + +AG +   + N+        D DV
Sbjct: 125 NILMVGPTGSGKTYLAQTLARRLNVPFAVADATSLTEAGYVGEDVENILLKLIQAADYDV 184

Query: 109 -------LFIDEIHRLS 118
                  ++IDEI ++S
Sbjct: 185 KKAEQGIIYIDEIDKIS 201


>gi|187830070|ref|NP_001120720.1| LOC100147734 [Zea mays]
 gi|166093207|gb|ABY82589.1| filamentation temperature-sensitive H 2A [Zea mays]
 gi|166093211|gb|ABY82591.1| filamentation temperature-sensitive H 2A [Zea mays]
          Length = 677

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 250 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 280


>gi|167762257|ref|ZP_02434384.1| hypothetical protein BACSTE_00610 [Bacteroides stercoris ATCC
           43183]
 gi|167699900|gb|EDS16479.1| hypothetical protein BACSTE_00610 [Bacteroides stercoris ATCC
           43183]
          Length = 594

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRS------TSGPVIAKAGDLAALLTNLEDR--DV 108
           +L  GPPG GKT  A+  A E+G NF         S  V A   ++A +    E+    V
Sbjct: 357 MLLYGPPGCGKTFFAKHFAEEVGFNFMCITPATLKSRYVNATQENIAKMFKEAEENAPTV 416

Query: 109 LFIDEIHRL 117
           +FIDE++ L
Sbjct: 417 IFIDEMNEL 425


>gi|150865535|ref|XP_001384792.2| AAA ATPase [Scheffersomyces stipitis CBS 6054]
 gi|149386791|gb|ABN66763.2| AAA ATPase [Scheffersomyces stipitis CBS 6054]
          Length = 832

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL  GPPG GKTT+A  +A EL V F + S P I    +G+    L  + D        +
Sbjct: 229 VLLYGPPGCGKTTIANALAGELQVPFINISAPSIVSGMSGESEKKLREIFDEAKTLAPCI 288

Query: 109 LFIDEIHRLS 118
           +F+DEI  ++
Sbjct: 289 IFMDEIDAIT 298



 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 560 VLMWGPPGCGKTLLAKAVANESRANFISIKGP 591


>gi|219847456|ref|YP_002461889.1| AAA ATPase central domain-containing protein [Chloroflexus
           aggregans DSM 9485]
 gi|219541715|gb|ACL23453.1| AAA ATPase central domain protein [Chloroflexus aggregans DSM 9485]
          Length = 657

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 12/70 (17%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA----GDLAALLTNLEDRD----- 107
           +L +GPPG GK+ LAQ ++ E GV F   S P +  A    G++  +    + R      
Sbjct: 152 ILLIGPPGTGKSYLAQAISTEAGVPFGYLSAPSLLSAWMGMGNIKVMNLYRKARRLAREY 211

Query: 108 ---VLFIDEI 114
              +LFIDEI
Sbjct: 212 GACILFIDEI 221


>gi|308812909|ref|XP_003083761.1| FtsH protease, putative (ISS) [Ostreococcus tauri]
 gi|116055643|emb|CAL57728.1| FtsH protease, putative (ISS) [Ostreococcus tauri]
          Length = 610

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           +L VGPPG GKT LA+ VA E GV F  TSG
Sbjct: 215 LLLVGPPGTGKTMLAKAVAGEAGVPFFYTSG 245


>gi|115374427|ref|ZP_01461709.1| peptidase M41, FtsH [Stigmatella aurantiaca DW4/3-1]
 gi|115368519|gb|EAU67472.1| peptidase M41, FtsH [Stigmatella aurantiaca DW4/3-1]
          Length = 671

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 225 VLLVGPPGTGKTLLARAVAGEAGVPFFSLSG 255


>gi|114707245|ref|ZP_01440143.1| ATP-dependent protease ATP-binding subunit [Fulvimarina pelagi
           HTCC2506]
 gi|114537441|gb|EAU40567.1| ATP-dependent protease ATP-binding subunit [Fulvimarina pelagi
           HTCC2506]
          Length = 422

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L +GP G GKT LAQ +AR + V F       + +AG +   + N+         
Sbjct: 110 AKSNILLIGPTGCGKTLLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQSAD 169

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDEI ++S
Sbjct: 170 YNVERAQRGIVYIDEIDKIS 189


>gi|84468286|dbj|BAE71226.1| putative zinc dependent protease [Trifolium pratense]
          Length = 692

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 266 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 296


>gi|70727499|ref|YP_254415.1| cell-division protein [Staphylococcus haemolyticus JCSC1435]
 gi|123748601|sp|Q4L3G8|FTSH_STAHJ RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|68448225|dbj|BAE05809.1| cell-division protein [Staphylococcus haemolyticus JCSC1435]
          Length = 727

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E G  F S SG       V   A  +  L  N +     +
Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 260

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 261 IFIDEI 266


>gi|34557847|ref|NP_907662.1| ATP-dependent Zn protease [Wolinella succinogenes DSM 1740]
 gi|34483565|emb|CAE10562.1| ATPASE EC 3.4.24.-ATP-dependent Zn proteases [Wolinella
           succinogenes]
          Length = 579

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           VL +GPPG+GKT +A+ VA E GV F   SG   A+   G  A  + +L  R       +
Sbjct: 217 VLLMGPPGVGKTLIAKAVAGEAGVPFFYQSGSSFAQIYVGMGAKRVRDLFMRAKLSAPSI 276

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 277 IFIDEI 282


>gi|326429974|gb|EGD75544.1| replication factor C 4 [Salpingoeca sp. ATCC 50818]
          Length = 345

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RPRT  +   Q +  + L+  I  A      + H+LF GPPG GKT+    ++REL
Sbjct: 30 RPRTTADVAHQSQVIATLRATISGAD-----MPHLLFYGPPGTGKTSTILALSREL 80


>gi|320161491|ref|YP_004174715.1| cell division protein FtsH [Anaerolinea thermophila UNI-1]
 gi|319995344|dbj|BAJ64115.1| cell division protein FtsH [Anaerolinea thermophila UNI-1]
          Length = 623

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 51/104 (49%), Gaps = 15/104 (14%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  EA   LK  +E  +   + +         VL VGPPG GKT +A+ V+ E 
Sbjct: 162 TFDDVAGVDEAKEELKEVVEFLREPQKFIQLGARIPKGVLLVGPPGTGKTLIAKAVSGEA 221

Query: 79  GVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEI 114
           GV F S SG    +   G  A+ + +L D+       ++F+DEI
Sbjct: 222 GVPFFSISGSEFVEMFVGVGASRVRDLFDQARRHSPCIVFVDEI 265


>gi|302760667|ref|XP_002963756.1| hypothetical protein SELMODRAFT_141788 [Selaginella moellendorffii]
 gi|300169024|gb|EFJ35627.1| hypothetical protein SELMODRAFT_141788 [Selaginella moellendorffii]
          Length = 879

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 90/214 (42%), Gaps = 35/214 (16%)

Query: 8   LSRNVSQEDADISLL--RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPG 64
           L   +S E+ ++ L+  + R   E  G  +    +  ++   K + +A   VL FVGPPG
Sbjct: 342 LPWQISSEERELDLVAAKERLDSEHYGLGKVKKRIIEYLAVRKLKPDARGPVLCFVGPPG 401

Query: 65  LGKTTLAQVVARELGVNF-RSTSGPVIAKA---GDLAALLTNLEDR------------DV 108
           +GKT+LA  +A  LG  F R + G V  +A   G     + ++  R             V
Sbjct: 402 VGKTSLASSIAGALGRLFIRISLGGVKDEADIRGHRRTYIGSMPGRLIEGIKRVGVNNPV 461

Query: 109 LFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAAT 160
           + +DEI +    V         E+L P       D  +       +V  +LS+   +A  
Sbjct: 462 MLLDEIDKTGTDVRGDPASALLEVLDPEQNRTFNDHYL-------NVPFDLSKVVFVATA 514

Query: 161 TRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
            R+  ++ PL DR  + I L  Y  E+   I  R
Sbjct: 515 NRIQPISPPLLDRMEV-IELPGYTSEEKLCIAMR 547


>gi|302794532|ref|XP_002979030.1| hypothetical protein SELMODRAFT_152929 [Selaginella moellendorffii]
 gi|300153348|gb|EFJ19987.1| hypothetical protein SELMODRAFT_152929 [Selaginella moellendorffii]
          Length = 595

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 169 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 199


>gi|302806390|ref|XP_002984945.1| hypothetical protein SELMODRAFT_156952 [Selaginella moellendorffii]
 gi|300147531|gb|EFJ14195.1| hypothetical protein SELMODRAFT_156952 [Selaginella moellendorffii]
          Length = 595

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 169 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 199


>gi|284054936|ref|ZP_06385146.1| ATP-dependent metalloprotease FtsH [Arthrospira platensis str.
          Paraca]
          Length = 121

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
          VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 10 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 40


>gi|290961843|ref|YP_003493025.1| shikimate kinase I [Streptomyces scabiei 87.22]
 gi|260651369|emb|CBG74491.1| shikimate kinase I [Streptomyces scabiei 87.22]
          Length = 172

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 17/38 (44%), Positives = 27/38 (71%)

Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG 94
          V+ VGP G+GK+T+ Q++A  LGV +R T   ++A+ G
Sbjct: 7  VVLVGPMGVGKSTVGQLLAERLGVAYRDTDDDIVAEQG 44


>gi|254573476|ref|XP_002493847.1| Putative ATPase of the AAA family [Pichia pastoris GS115]
 gi|238033646|emb|CAY71668.1| Putative ATPase of the AAA family [Pichia pastoris GS115]
 gi|328354331|emb|CCA40728.1| Uncharacterized AAA domain-containing protein C16E9.10c [Pichia
           pastoris CBS 7435]
          Length = 818

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 556 VLMWGPPGCGKTLLAKAVANESKANFISIKGP 587



 Score = 39.3 bits (90), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL  GPPG GKTT+A  +A EL V F S S P +
Sbjct: 232 VLLHGPPGCGKTTIANALAGELQVPFISLSAPSV 265


>gi|241060074|ref|XP_002407985.1| ATP-dependent protease PIM1/LON, putative [Ixodes scapularis]
 gi|215492328|gb|EEC01969.1| ATP-dependent protease PIM1/LON, putative [Ixodes scapularis]
          Length = 857

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 88/209 (42%), Gaps = 33/209 (15%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTT 69
             S+E+ D++  +    E+  G  +    +  FI  ++ +      +L F GPPG+GKT+
Sbjct: 379 KTSEENLDLARAKEVLEEDHYGMDDVKKRILEFIAVSQLKGTTQGKMLCFYGPPGVGKTS 438

Query: 70  LAQVVARELGVN-FRSTSG--------------PVIAKAGDLAALLTNLEDRD-VLFIDE 113
           +A+ +AR L    FR + G               V A  G L   L   +  + ++ IDE
Sbjct: 439 IARSIARALNREYFRFSVGGMTDVAEIKGHRRTYVGAMPGKLIQCLKKTKTENPLVLIDE 498

Query: 114 IHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
           + ++        S  + E+L P      LD  +        V ++LS+   I        
Sbjct: 499 VDKIGRGYQGDPSSALLEVLDPEQNANFLDHYL-------DVNVDLSKVLFICTANVTDT 551

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           +  PL+DR  + I ++ Y  E+   I +R
Sbjct: 552 IPEPLKDRLEM-IEVSGYVAEEKMAIAER 579


>gi|194855767|ref|XP_001968610.1| GG24404 [Drosophila erecta]
 gi|190660477|gb|EDV57669.1| GG24404 [Drosophila erecta]
          Length = 993

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 17/27 (62%), Positives = 18/27 (66%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFR 83
            L  GPPGLGKTTLA  +AR  G N R
Sbjct: 423 ALLCGPPGLGKTTLAHTIARHAGYNVR 449


>gi|144899461|emb|CAM76325.1| ClpX, ATPase regulatory subunit [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 421

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+         
Sbjct: 110 AKSNILLIGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAAE 169

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDE+ ++S
Sbjct: 170 YNVERAQRGIVYIDEVDKIS 189


>gi|104773522|ref|YP_618502.1| cell division protein FtsH [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|103422603|emb|CAI97206.1| Cell division protein FtsH [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
          Length = 737

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108
           VL  GPPG GKT LA+ VA E GV F   SG       V   A  +  L TN +     +
Sbjct: 225 VLLEGPPGTGKTLLAKAVAGEAGVPFFYISGSDFVEMFVGVGASRVRDLFTNAKKNAPSI 284

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 285 IFIDEI 290


>gi|58038574|ref|YP_190538.1| ATP-dependent protease ATP-binding subunit ClpX [Gluconobacter
           oxydans 621H]
 gi|81352673|sp|Q5FUR4|CLPX_GLUOX RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|58000988|gb|AAW59882.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Gluconobacter
           oxydans 621H]
          Length = 421

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+         
Sbjct: 109 AKSNILLIGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSAD 168

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDEI ++S
Sbjct: 169 YNVDRAQRGIVYIDEIDKIS 188


>gi|75114857|sp|Q655S1|FTSH2_ORYSJ RecName: Full=ATP-dependent zinc metalloprotease FTSH 2,
           chloroplastic; Short=OsFTSH2; Flags: Precursor
 gi|52075838|dbj|BAD45446.1| putative FtsH-like protein Pftf precursor [Oryza sativa Japonica
           Group]
 gi|125556417|gb|EAZ02023.1| hypothetical protein OsI_24055 [Oryza sativa Indica Group]
 gi|125598182|gb|EAZ37962.1| hypothetical protein OsJ_22309 [Oryza sativa Japonica Group]
          Length = 676

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 250 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 280


>gi|56750609|ref|YP_171310.1| ATP-dependent Zn protease [Synechococcus elongatus PCC 6301]
 gi|81299751|ref|YP_399959.1| FtsH peptidase [Synechococcus elongatus PCC 7942]
 gi|56685568|dbj|BAD78790.1| ATP-dependent Zn protease [Synechococcus elongatus PCC 6301]
 gi|81168632|gb|ABB56972.1| FtsH peptidase homologue, chloroplast. Metallo peptidase. MEROPS
           family M41 [Synechococcus elongatus PCC 7942]
          Length = 630

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 210 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 240


>gi|13476995|ref|NP_108565.1| ATP-dependent protease ATP-binding subunit ClpX [Mesorhizobium loti
           MAFF303099]
 gi|21263478|sp|Q982V5|CLPX_RHILO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|14027758|dbj|BAB54351.1| ATP-dependent Clp protease ATP binding subunit; ClpX [Mesorhizobium
           loti MAFF303099]
          Length = 424

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L +GP G GKT LAQ +AR + V F       + +AG +   + N+         
Sbjct: 112 AKSNILLIGPTGCGKTLLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQSAD 171

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDEI ++S
Sbjct: 172 YNVERAQRGIVYIDEIDKIS 191


>gi|313680147|ref|YP_004057886.1| ATP-dependent clp protease ATP-binding subunit clpx [Oceanithermus
           profundus DSM 14977]
 gi|313152862|gb|ADR36713.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Oceanithermus
           profundus DSM 14977]
          Length = 398

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 56/123 (45%), Gaps = 25/123 (20%)

Query: 21  LLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAE------ALDHVLFVGPPGLGKTT 69
           L RP  ++ F      GQ EA   L V +     R +         +VL +GP G GKT 
Sbjct: 57  LPRPAEIKAFLDDYVIGQEEAKKVLAVAVYNHYKRLQHPEAELGKSNVLLIGPTGTGKTL 116

Query: 70  LAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL----------EDRDVLFIDEIH 115
           LA+ +AR+L V F       + +AG    D+  +L  L           +R +++IDEI 
Sbjct: 117 LAETLARQLKVPFAIADATTLTEAGYVGDDVENVLVRLLQAADYNVEAAERGIIYIDEID 176

Query: 116 RLS 118
           +++
Sbjct: 177 KIA 179


>gi|303247806|ref|ZP_07334075.1| ATP-dependent metalloprotease FtsH [Desulfovibrio fructosovorans
           JJ]
 gi|302490890|gb|EFL50789.1| ATP-dependent metalloprotease FtsH [Desulfovibrio fructosovorans
           JJ]
          Length = 609

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL +GPPG GKT LA+ VA E GV F S SG
Sbjct: 194 VLLIGPPGTGKTLLARAVAGEAGVPFFSISG 224


>gi|291238538|ref|XP_002739185.1| PREDICTED: predicted protein-like [Saccoglossus kowalevskii]
          Length = 434

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 9/67 (13%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFR--STSGPVIAKAGDLAALLTNL-------EDRD 107
           +L  GPPG GK+ LAQ V+ E+   F   S+S  V +  G+   L+  L       + R 
Sbjct: 168 ILLYGPPGTGKSRLAQAVSSEIDSVFYCVSSSDLVSSWVGESEKLIKELFQHAVDQKGRS 227

Query: 108 VLFIDEI 114
           V+FIDEI
Sbjct: 228 VVFIDEI 234


>gi|283852375|ref|ZP_06369645.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfovibrio
           sp. FW1012B]
 gi|283572223|gb|EFC20213.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfovibrio
           sp. FW1012B]
          Length = 417

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 67/145 (46%), Gaps = 31/145 (21%)

Query: 5   EGLLSRNVSQEDADISLLRP----RTLEEFT-GQVEACSNLKVFIE--------AAKARA 51
           E +   +VS+E     LL P    R L+E+  GQ +A   L V +         A  A A
Sbjct: 45  EIIAQESVSEETEGGKLLPPAEIKRLLDEYVIGQEQAKKILAVAVHNHYKRVYYAGAAGA 104

Query: 52  EALD----HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD--------LAAL 99
           + ++    ++L +GP G GKT LAQ +AR L V F       + +AG         L  L
Sbjct: 105 DDVEIDKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILVQL 164

Query: 100 LTNLE------DRDVLFIDEIHRLS 118
           L N +       + +++IDEI +++
Sbjct: 165 LQNADYDIEAASKGIIYIDEIDKIA 189


>gi|242005728|ref|XP_002423714.1| Katanin p60 ATPase-containing subunit, putative [Pediculus humanus
           corporis]
 gi|212506899|gb|EEB10976.1| Katanin p60 ATPase-containing subunit, putative [Pediculus humanus
           corporis]
          Length = 526

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108
           VL VGPPG GKT LA+ VA E G  F + S   +     G+   L      +        
Sbjct: 282 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPST 341

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 342 IFIDEIDSL 350


>gi|307152321|ref|YP_003887705.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7822]
 gi|306982549|gb|ADN14430.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7822]
          Length = 672

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL VGPPG GKT LA+ VA E GV F S S     +   G  AA + +L ++       +
Sbjct: 240 VLLVGPPGTGKTLLAKAVAGEAGVTFFSISASEFVELFVGTGAARVRDLFEQAKQQAPCI 299

Query: 109 LFIDEI 114
           +FIDE+
Sbjct: 300 IFIDEL 305


>gi|166367879|ref|YP_001660152.1| cell division protein [Microcystis aeruginosa NIES-843]
 gi|166090252|dbj|BAG04960.1| cell division protein [Microcystis aeruginosa NIES-843]
          Length = 628

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 209 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 239


>gi|166033186|ref|ZP_02236015.1| hypothetical protein DORFOR_02908 [Dorea formicigenerans ATCC
           27755]
 gi|166027543|gb|EDR46300.1| hypothetical protein DORFOR_02908 [Dorea formicigenerans ATCC
           27755]
          Length = 612

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F + SG
Sbjct: 204 VLLVGPPGTGKTLLAKAVAGEAGVPFFTISG 234


>gi|309780957|ref|ZP_07675696.1| FtsH cell division protein [Ralstonia sp. 5_7_47FAA]
 gi|330824647|ref|YP_004387950.1| ATP-dependent metalloprotease FtsH [Alicycliphilus denitrificans
           K601]
 gi|57282289|emb|CAD32530.1| putative zinc metallopeptidase [uncultured bacterium]
 gi|308920260|gb|EFP65918.1| FtsH cell division protein [Ralstonia sp. 5_7_47FAA]
 gi|329310019|gb|AEB84434.1| ATP-dependent metalloprotease FtsH [Alicycliphilus denitrificans
           K601]
          Length = 627

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 45/92 (48%), Gaps = 8/92 (8%)

Query: 34  VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK- 92
           VE    LK   E  +  A     VL VGPPG GKT L + VA E GV F S SG    + 
Sbjct: 170 VEIVDFLKNPQEYGRLGARIPKGVLLVGPPGTGKTLLTKAVAGEAGVPFFSISGSEFVEM 229

Query: 93  -AGDLAALLTNLEDR------DVLFIDEIHRL 117
             G  AA + +L ++       ++FIDE+  L
Sbjct: 230 FVGVGAARVRDLFEQARGQAPAIIFIDELDAL 261


>gi|18033709|gb|AAL57218.1|AF361493_1 FNP001 [Homo sapiens]
          Length = 361

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-----RSTSGPVIAKAGDLAALLTNLEDR---DV 108
           VL  GPPG GKT +A+  A+E G  F     R+ +     ++  LAA + +L  +    +
Sbjct: 129 VLLYGPPGCGKTLIAKATAKEAGCRFINLQPRTLTDKWYGESQKLAAAVFSLAIKLQPSI 188

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 189 IFIDEI 194


>gi|46199052|ref|YP_004719.1| ATP-dependent protease La [Thermus thermophilus HB27]
 gi|81405922|sp|Q72JM6|LON2_THET2 RecName: Full=Lon protease 2; AltName: Full=ATP-dependent protease
           La 2
 gi|46196676|gb|AAS81092.1| ATP-dependent protease La [Thermus thermophilus HB27]
          Length = 804

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 84/227 (37%), Gaps = 51/227 (22%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD----------------LAALL 100
           +LFVGPPG+GKT++A+ +A  LG  +   S   +    D                +  L 
Sbjct: 358 LLFVGPPGVGKTSIAKSIAEALGRKYVRVSLGGVRDESDIRGHRRTYIGAMPGRIIQGLR 417

Query: 101 TNLEDRDVLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLS 152
                  V  +DE+ +L I  +        E+L PA     +D  +G       V  +LS
Sbjct: 418 QAGTKNPVFLLDEVDKLGISYQGDPAAALLEVLDPAQNKEFVDHYLG-------VPFDLS 470

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFY-EIEDL----KTIVQRGAKLTGLAVTDEA 207
               I        +  PL DR   PI    Y E E L    + ++ R  K  GL      
Sbjct: 471 EVMFICTANFPQNIPAPLYDRME-PIEFTSYTEQEKLEIAKRYLLPRQLKENGLEPEQVV 529

Query: 208 ACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
             E A            L R +  +   A  + + REI   ALLR A
Sbjct: 530 VTEAA------------LTRLITHYTREAGVRQLEREI--GALLRKA 562


>gi|330686091|gb|EGG97713.1| ATP-dependent metallopeptidase HflB [Staphylococcus epidermidis
           VCU121]
          Length = 685

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E G  F S SG       V   A  +  L  N +     +
Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 260

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 261 IFIDEI 266


>gi|325266076|ref|ZP_08132762.1| ATP-dependent Clp protease ATP-binding subunit [Kingella
           denitrificans ATCC 33394]
 gi|324982714|gb|EGC18340.1| ATP-dependent Clp protease ATP-binding subunit [Kingella
           denitrificans ATCC 33394]
          Length = 427

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           +VL +GP G GKT + Q +AR+L V F       + +AG    D+  ++T L        
Sbjct: 120 NVLMIGPTGSGKTYMVQSLARQLNVPFAMADATTLTEAGYVGEDVETIITKLLGNCDFNV 179

Query: 104 --EDRDVLFIDEIHRLS 118
                 +++IDEI ++S
Sbjct: 180 EKAQHGIIYIDEIDKIS 196


>gi|321262545|ref|XP_003195991.1| peroxisome biosynthesis protein PAS1 (Peroxin-1) [Cryptococcus
           gattii WM276]
 gi|317462466|gb|ADV24204.1| Peroxisome biosynthesis protein PAS1 (Peroxin-1), putative
           [Cryptococcus gattii WM276]
          Length = 1009

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  G PG GKT LA  VA+E G+NF S  GP I
Sbjct: 687 LLLYGYPGCGKTLLASAVAKECGLNFISVKGPEI 720


>gi|310821962|ref|YP_003954320.1| ATP-dependent metalloprotease ftsh [Stigmatella aurantiaca DW4/3-1]
 gi|309395034|gb|ADO72493.1| ATP-dependent metalloprotease FtsH [Stigmatella aurantiaca DW4/3-1]
          Length = 683

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 237 VLLVGPPGTGKTLLARAVAGEAGVPFFSLSG 267


>gi|320010035|gb|ADW04885.1| ATP-dependent metalloprotease FtsH [Streptomyces flavogriseus ATCC
           33331]
          Length = 682

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 4/58 (6%)

Query: 34  VEACSNLKVFI-EAAKARA---EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VE    +K F+ E AK +A   +    VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 182 VEELYEIKEFLQEPAKFQAVGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISG 239


>gi|239637497|ref|ZP_04678471.1| Cell division protease FtsH homolog [Staphylococcus warneri L37603]
 gi|239596942|gb|EEQ79465.1| Cell division protease FtsH homolog [Staphylococcus warneri L37603]
          Length = 685

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E G  F S SG       V   A  +  L  N +     +
Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 260

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 261 IFIDEI 266


>gi|238926239|ref|ZP_04657999.1| ATP dependent protease ATP-binding subunit [Selenomonas flueggei
           ATCC 43531]
 gi|238885919|gb|EEQ49557.1| ATP dependent protease ATP-binding subunit [Selenomonas flueggei
           ATCC 43531]
          Length = 421

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 53/112 (47%), Gaps = 25/112 (22%)

Query: 32  GQVEACSNLKVF-------IEAAKARAEALD----HVLFVGPPGLGKTTLAQVVARELGV 80
           GQ EA  +L V        I A + + E ++    +VL +GP G GKT LAQ +AR L V
Sbjct: 77  GQDEAKKSLSVAVYNHYKRIHAGQGKNEDVELRKSNVLMIGPTGSGKTLLAQTLARILNV 136

Query: 81  NFRSTSGPVIAKAG----DLAALLTNL----------EDRDVLFIDEIHRLS 118
            F       + +AG    D+  +L  L            R +++IDEI +++
Sbjct: 137 PFAIADATSLTEAGYVGEDVENILLKLIQAADYDIEKAQRGIIYIDEIDKIA 188


>gi|225022112|ref|ZP_03711304.1| hypothetical protein CORMATOL_02145 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945045|gb|EEG26254.1| hypothetical protein CORMATOL_02145 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 977

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 36/70 (51%), Gaps = 9/70 (12%)

Query: 26  TLEEFTGQVEACSNL---KVFIEAAKARAEALD-----HVLFVGPPGLGKTTLAQVVARE 77
           T  +  G  EA   L   K F++   +R EAL       VL  GPPG GKT LA+ VA E
Sbjct: 165 TFADVAGANEAVDELQEIKDFLQDP-SRYEALGAKIPRGVLLYGPPGTGKTLLARAVAGE 223

Query: 78  LGVNFRSTSG 87
            GV F S SG
Sbjct: 224 AGVPFYSISG 233


>gi|255563409|ref|XP_002522707.1| Protein cdcH, putative [Ricinus communis]
 gi|223538057|gb|EEF39669.1| Protein cdcH, putative [Ricinus communis]
          Length = 828

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 17/32 (53%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT +A+ VA E G NF    GP
Sbjct: 595 ILLYGPPGCGKTLIAKAVANEAGANFIHIKGP 626



 Score = 37.7 bits (86), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 10/67 (14%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED---------RD 107
           +L  GPPG GKT LA  +A E GV F   S   +  +G   A   N+ +           
Sbjct: 290 ILLHGPPGCGKTKLAHAIANETGVPFYKISATEVV-SGVSGASEENIRELFSKAYRTAPS 348

Query: 108 VLFIDEI 114
           ++FIDEI
Sbjct: 349 IVFIDEI 355


>gi|195051153|ref|XP_001993043.1| GH13305 [Drosophila grimshawi]
 gi|193900102|gb|EDV98968.1| GH13305 [Drosophila grimshawi]
          Length = 332

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 7/64 (10%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL--GV 80
          RP  L++     E  S +  FI   +     L H+LF GPPG GKT+     AR+L    
Sbjct: 18 RPNCLDDLISHEEIISTITRFINQKQ-----LPHLLFYGPPGTGKTSTILACARQLYSSA 72

Query: 81 NFRS 84
          +F+S
Sbjct: 73 HFKS 76


>gi|172036185|ref|YP_001802686.1| cell division protein [Cyanothece sp. ATCC 51142]
 gi|171697639|gb|ACB50620.1| cell division protein [Cyanothece sp. ATCC 51142]
          Length = 628

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 209 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 239


>gi|126660834|ref|ZP_01731928.1| cell division protein; FtsH [Cyanothece sp. CCY0110]
 gi|126617885|gb|EAZ88660.1| cell division protein; FtsH [Cyanothece sp. CCY0110]
          Length = 628

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 209 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 239


>gi|157116507|ref|XP_001658526.1| aaa atpase [Aedes aegypti]
 gi|108876428|gb|EAT40653.1| aaa atpase [Aedes aegypti]
          Length = 546

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108
           VL VGPPG GKT LA+ VA E G  F + S   +     G+   L      +        
Sbjct: 304 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPST 363

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 364 IFIDEIDSL 372


>gi|58262374|ref|XP_568597.1| DNA replication factor [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|57230771|gb|AAW47080.1| DNA replication factor, putative [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 373

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 5/60 (8%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +   RP +L++     +  S ++ FIEA +     L H+L  GPPG GKT+    +AR L
Sbjct: 57  VEKYRPVSLDDVVSHKDITSTIEKFIEAGR-----LPHLLLYGPPGTGKTSTVLALARRL 111


>gi|150390919|ref|YP_001320968.1| ATP-dependent metalloprotease FtsH [Alkaliphilus metalliredigens
           QYMF]
 gi|310943083|sp|A6TSZ1|FTSH1_ALKMQ RecName: Full=ATP-dependent zinc metalloprotease FtsH 1
 gi|149950781|gb|ABR49309.1| ATP-dependent metalloprotease FtsH [Alkaliphilus metalliredigens
           QYMF]
          Length = 590

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--V 108
           V+  G PG GKT LA+ +A E GV F + SG    +      AG +  L    +D+   V
Sbjct: 191 VILYGSPGTGKTLLARALASEAGVEFLAVSGSDFVQVYAGLGAGRIRNLFKKAKDKGKCV 250

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 251 IFIDEI 256


>gi|219669328|ref|YP_002459763.1| ATPase AAA [Desulfitobacterium hafniense DCB-2]
 gi|219539588|gb|ACL21327.1| AAA ATPase central domain protein [Desulfitobacterium hafniense
           DCB-2]
          Length = 617

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 79/176 (44%), Gaps = 40/176 (22%)

Query: 56  HVLFVGPPGLGKTTLAQVVA---RELGVNFRST------SGPVIAKAGDLAALLTNLEDR 106
           H++F G PG GKTT+A+++A   + LG+  +        SG V    G  A     +  +
Sbjct: 396 HLVFSGNPGTGKTTVARLLAEIYKALGLVSKGQLIETDRSGLVAGYVGQTALKTQEVISK 455

Query: 107 ---DVLFIDEIHRLS-------IIVEEI--LYPAMEDFQLDL--MVGEGPSARSVKINLS 152
               +LFIDE + L+          E I  L  AMED + DL  +V   P        + 
Sbjct: 456 AKGGILFIDEAYSLTENRGEADFGTEAIDTLVKAMEDNRADLVIIVAGYPEP------ME 509

Query: 153 RFTLIAATTRVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEA 207
           RF          L +NP L+ RF   I  + Y  E+L  I++   K T L+++ +A
Sbjct: 510 RF----------LDSNPGLRSRFNKFISFDDYSAEELLLILKSMCKKTNLSLSSQA 555


>gi|32035049|ref|ZP_00135115.1| COG1219: ATP-dependent protease Clp, ATPase subunit [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126208745|ref|YP_001053970.1| ATP-dependent protease ATP-binding subunit ClpX [Actinobacillus
           pleuropneumoniae L20]
 gi|190150598|ref|YP_001969123.1| ATP-dependent Clp protease ATP-binding subunit [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|303250640|ref|ZP_07336837.1| ATP-dependent protease ATP-binding subunit [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|303252092|ref|ZP_07338261.1| ATP-dependent protease ATP-binding subunit [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307246196|ref|ZP_07528277.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307248302|ref|ZP_07530327.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|307252912|ref|ZP_07534800.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307255176|ref|ZP_07536994.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307257344|ref|ZP_07539114.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|307259614|ref|ZP_07541338.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307263942|ref|ZP_07545545.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|126097537|gb|ABN74365.1| ATP-dependent Clp protease ATP-binding subunit [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|189915729|gb|ACE61981.1| ATP-dependent Clp protease ATP-binding subunit [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|302649074|gb|EFL79261.1| ATP-dependent protease ATP-binding subunit [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|302650628|gb|EFL80787.1| ATP-dependent protease ATP-binding subunit [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306852805|gb|EFM85029.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306855172|gb|EFM87350.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306859550|gb|EFM91575.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306862049|gb|EFM94025.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306864194|gb|EFM96107.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306866259|gb|EFM98123.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306870704|gb|EFN02445.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 419

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LA+ +AR L V F       + +AG +   + N+            
Sbjct: 118 NILLIGPTGSGKTLLAETLARRLNVPFAVADATTLTQAGYVGEDVENVIQKLLMKCDFDA 177

Query: 104 --EDRDVLFIDEIHRLS 118
              +R ++FIDEI +++
Sbjct: 178 EQAERGIVFIDEIDKIT 194


>gi|34762904|ref|ZP_00143886.1| DNA polymerase III subunit gamma/tau [Fusobacterium nucleatum
          subsp. vincentii ATCC 49256]
 gi|27887431|gb|EAA24519.1| DNA polymerase III subunit gamma/tau [Fusobacterium nucleatum
          subsp. vincentii ATCC 49256]
          Length = 490

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 6/59 (10%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
          RP +  E +G+ E   +LK+ ++  K+ A A    LF GP G+GKTT+A+++A+  GVN
Sbjct: 16 RPSSFSEVSGENEIVKSLKLSLKN-KSMAHAY---LFSGPRGVGKTTIARLIAK--GVN 68


>gi|332702893|ref|ZP_08422981.1| ATP-dependent metalloprotease FtsH [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332553042|gb|EGJ50086.1| ATP-dependent metalloprotease FtsH [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 628

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108
           VL VGPPG GKT LA+ VA E GV F S +G       V   A  + +L  + +     +
Sbjct: 213 VLLVGPPGCGKTLLARAVAGEAGVPFFSITGSDFMEMFVGVGASRVRSLFEDAKKNTPSI 272

Query: 109 LFIDEI 114
           +FIDE+
Sbjct: 273 IFIDEL 278


>gi|325911570|ref|ZP_08173978.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners
          UPII 143-D]
 gi|325476556|gb|EGC79714.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners
          UPII 143-D]
          Length = 587

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 6/77 (7%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
          RPRT E   GQ   C  L+  I+  K     + H  LF GP G GKT+ A++ A+ +   
Sbjct: 15 RPRTFEAVVGQSAICDTLRNSIKRHK-----ISHAFLFSGPRGTGKTSCAKIFAKAINCM 69

Query: 82 FRSTSGPVIAKAGDLAA 98
                P    +  LAA
Sbjct: 70 DSKDGEPCNQCSNCLAA 86


>gi|309806689|ref|ZP_07700685.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners
          LactinV 03V1-b]
 gi|308166994|gb|EFO69177.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners
          LactinV 03V1-b]
          Length = 587

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 6/77 (7%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
          RPRT E   GQ   C  L+  I+  K     + H  LF GP G GKT+ A++ A+ +   
Sbjct: 15 RPRTFEAVVGQSAICDTLRNSIKRHK-----ISHAFLFSGPRGTGKTSCAKIFAKAINCM 69

Query: 82 FRSTSGPVIAKAGDLAA 98
                P    +  LAA
Sbjct: 70 DSKDGEPCNQCSNCLAA 86


>gi|309803539|ref|ZP_07697632.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners
          LactinV 11V1-d]
 gi|308164423|gb|EFO66677.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners
          LactinV 11V1-d]
          Length = 583

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 6/77 (7%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
          RPRT E   GQ   C  L+  I+  K     + H  LF GP G GKT+ A++ A+ +   
Sbjct: 11 RPRTFEAVVGQSAICDTLRNSIKRHK-----ISHAFLFSGPRGTGKTSCAKIFAKAINCM 65

Query: 82 FRSTSGPVIAKAGDLAA 98
                P    +  LAA
Sbjct: 66 DSKDGEPCNQCSNCLAA 82


>gi|307190797|gb|EFN74666.1| Katanin p60 ATPase-containing subunit [Camponotus floridanus]
          Length = 504

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA-----KAGDLAALLTNLED---RDV 108
           VL VGPPG GKT LA+ VA E G  F + S   +      ++  L  LL  +        
Sbjct: 260 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPST 319

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 320 IFIDEIDSL 328


>gi|302681813|ref|XP_003030588.1| hypothetical protein SCHCODRAFT_57861 [Schizophyllum commune H4-8]
 gi|300104279|gb|EFI95685.1| hypothetical protein SCHCODRAFT_57861 [Schizophyllum commune H4-8]
          Length = 1042

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  G PG GKT LA  VA+E G+NF S  GP I
Sbjct: 728 LLLYGYPGCGKTLLASAVAKECGLNFISVKGPEI 761


>gi|299137537|ref|ZP_07030718.1| ATP-dependent protease La [Acidobacterium sp. MP5ACTX8]
 gi|298600178|gb|EFI56335.1| ATP-dependent protease La [Acidobacterium sp. MP5ACTX8]
          Length = 810

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 96/230 (41%), Gaps = 42/230 (18%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAKAGDLAALLT 101
           + FVGPPG+GKT+L + +AR LG  F   S                 + A  G +   L 
Sbjct: 366 LCFVGPPGVGKTSLGRSIARALGRKFSRISLGGMHDEAEIRGHRRTYIGALPGQIIQHLK 425

Query: 102 NLEDRDVLF-IDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152
            +E  D +F +DEI +L        S  + E L P   +   D  + +         +LS
Sbjct: 426 RVEVNDPVFMLDEIDKLGRDFRGDPSSALLETLDPEQNNTFRDNYLDQ-------PFDLS 478

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL-----KTIVQRGAKLTGLAVT--D 205
           +   I    ++  +  PL DR  I I L  Y  E+      K ++ R  K  G++V   +
Sbjct: 479 KVLFICTANQLDPIPAPLLDRMEI-IELTGYTEEEKVNIAEKYLIPRQIKENGISVDLIE 537

Query: 206 EAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255
                +A+ +R   R AG  +RR+         + + R++A+    +L I
Sbjct: 538 FPTESVALIARHYTREAG--VRRLEQLIGTV-CRKLARKVAEGRTEKLVI 584


>gi|291278627|ref|YP_003495462.1| ATP-dependent Lon protease [Deferribacter desulfuricans SSM1]
 gi|290753329|dbj|BAI79706.1| ATP-dependent Lon protease [Deferribacter desulfuricans SSM1]
          Length = 772

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 16/26 (61%), Positives = 21/26 (80%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF 82
           + FVGPPG+GKT+LA+ +A  LG NF
Sbjct: 349 ICFVGPPGVGKTSLAKSIAEALGRNF 374


>gi|294660198|ref|NP_852808.2| cell division protease FtsH-like protein [Mycoplasma gallisepticum
           str. R(low)]
 gi|310946906|sp|D3FFN2|FTSH_MYCGH RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|284811848|gb|AAP56376.2| cell division protease ftsH-like protein [Mycoplasma gallisepticum
           str. R(low)]
 gi|284930269|gb|ADC30208.1| cell division protease ftsH-like protein [Mycoplasma gallisepticum
           str. R(high)]
          Length = 765

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 73/151 (48%), Gaps = 20/151 (13%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           V+  GPPG GKT LA+ VA E GV F   +G        G  A  + NL  +       +
Sbjct: 310 VVLYGPPGTGKTLLAKAVAGEAGVPFFQVTGSAFEDMLVGVGAKRVRNLFAKAKKAAPCI 369

Query: 109 LFIDEIHRLSII--VEEILYPAMEDFQLDLMVGE--GPSARSVKINLSRFTLIAATTRVG 164
           +FIDEI  +       EI   +  D  L+ ++ E  G S R+  I      ++AAT R+ 
Sbjct: 370 IFIDEIDSVGSKRGKYEISAGSATDQTLNQLLAEMDGFSTRTGII------VMAATNRLD 423

Query: 165 LLTNPL--QDRFGIPIRLNFYEIEDLKTIVQ 193
           +L + L    RF   I++N  +I++ + I++
Sbjct: 424 VLDDALLRPGRFDRHIQVNLPDIKEREAILK 454


>gi|258542725|ref|YP_003188158.1| Clp protease ATP-binding subunit ClpX [Acetobacter pasteurianus IFO
           3283-01]
 gi|256633803|dbj|BAH99778.1| Clp protease ATP-binding subunit ClpX [Acetobacter pasteurianus IFO
           3283-01]
 gi|256636862|dbj|BAI02831.1| Clp protease ATP-binding subunit ClpX [Acetobacter pasteurianus IFO
           3283-03]
 gi|256639915|dbj|BAI05877.1| Clp protease ATP-binding subunit ClpX [Acetobacter pasteurianus IFO
           3283-07]
 gi|256642971|dbj|BAI08926.1| Clp protease ATP-binding subunit ClpX [Acetobacter pasteurianus IFO
           3283-22]
 gi|256646026|dbj|BAI11974.1| Clp protease ATP-binding subunit ClpX [Acetobacter pasteurianus IFO
           3283-26]
 gi|256649079|dbj|BAI15020.1| Clp protease ATP-binding subunit ClpX [Acetobacter pasteurianus IFO
           3283-32]
 gi|256652066|dbj|BAI18000.1| Clp protease ATP-binding subunit ClpX [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256655123|dbj|BAI21050.1| Clp protease ATP-binding subunit ClpX [Acetobacter pasteurianus IFO
           3283-12]
          Length = 421

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+         
Sbjct: 109 AKSNILLIGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASD 168

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDEI ++S
Sbjct: 169 YNVERAQRGIVYIDEIDKIS 188


>gi|305680500|ref|ZP_07403308.1| putative cell division protease FtsH [Corynebacterium matruchotii
           ATCC 14266]
 gi|305660031|gb|EFM49530.1| putative cell division protease FtsH [Corynebacterium matruchotii
           ATCC 14266]
          Length = 974

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 33/59 (55%), Gaps = 6/59 (10%)

Query: 34  VEACSNLKVFIEAAKARAEALD-----HVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           V+    +K F++   +R EAL       VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 176 VDELQEIKDFLQDP-SRYEALGAKIPRGVLLYGPPGTGKTLLARAVAGEAGVPFYSISG 233


>gi|226509884|ref|NP_001150200.1| ATPase family AAA domain-containing protein 1 [Zea mays]
 gi|195637516|gb|ACG38226.1| ATPase family AAA domain-containing protein 1 [Zea mays]
          Length = 364

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 64/138 (46%), Gaps = 19/138 (13%)

Query: 57  VLFVGPPGLGKTTLAQVVARELG---VNFRSTS--GPVIAKAGDLAALLTNLEDR---DV 108
           VL  GPPG GKT LA+ +ARE G   +N R ++        A  L A + +L  +    +
Sbjct: 123 VLLYGPPGTGKTMLAKAIARESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAHKLQPAI 182

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLM-VGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           +FIDE+           + AM + + + M + +G +        +R  ++AAT R   L 
Sbjct: 183 IFIDEVDSFLGQRRTTDHEAMTNMKTEFMSLWDGFTTDQN----ARVMVLAATNRPSELD 238

Query: 168 NPLQDRF------GIPIR 179
             +  RF      GIP++
Sbjct: 239 EAILRRFTQIFEIGIPVQ 256


>gi|226491602|ref|NP_001147824.1| mitochondrial chaperone BCS1 [Zea mays]
 gi|195613970|gb|ACG28815.1| mitochondrial chaperone BCS1 [Zea mays]
          Length = 468

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 30/57 (52%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEI 114
           L  GPPG GK++L   +A  L  +        +    DL  LL N+++R +L I++I
Sbjct: 243 LLYGPPGTGKSSLIAAMANHLRFDIYDLELTAVTSNSDLRRLLVNMDNRSILVIEDI 299


>gi|195434969|ref|XP_002065474.1| GK15463 [Drosophila willistoni]
 gi|194161559|gb|EDW76460.1| GK15463 [Drosophila willistoni]
          Length = 980

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 18/26 (69%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFR 83
           L  GPPGLGKTTLA  +AR  G N R
Sbjct: 408 LLCGPPGLGKTTLAHTIARHAGYNVR 433


>gi|195117224|ref|XP_002003149.1| GI17752 [Drosophila mojavensis]
 gi|193913724|gb|EDW12591.1| GI17752 [Drosophila mojavensis]
          Length = 993

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 17/27 (62%), Positives = 18/27 (66%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFR 83
            L  GPPGLGKTTLA  +AR  G N R
Sbjct: 413 ALLCGPPGLGKTTLAHTIARHAGYNVR 439


>gi|163814649|ref|ZP_02206038.1| hypothetical protein COPEUT_00800 [Coprococcus eutactus ATCC 27759]
 gi|158450284|gb|EDP27279.1| hypothetical protein COPEUT_00800 [Coprococcus eutactus ATCC 27759]
          Length = 641

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT +A+ +A E GV F S SG
Sbjct: 219 VLLVGPPGTGKTLMAKAIAGEAGVPFFSISG 249


>gi|197117409|ref|YP_002137836.1| DNA-binding ATP-dependent protease La [Geobacter bemidjiensis Bem]
 gi|197086769|gb|ACH38040.1| DNA-binding ATP-dependent protease La [Geobacter bemidjiensis Bem]
          Length = 800

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 75/183 (40%), Gaps = 45/183 (24%)

Query: 43  FIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNF------------------R 83
           FI   K + +    +L  VGPPG+GKT++ + +A  LG  F                  R
Sbjct: 363 FIAVGKMKGDISGSILCLVGPPGVGKTSIGKSIADALGRTFYRFSLGGMRDEAEIKGHRR 422

Query: 84  STSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE--------EILYP----AMED 131
           +  G +  K   + A+ +      VL +DEI ++    +        E+L P    +  D
Sbjct: 423 TYIGAMPGKF--VQAMKSAGSSNPVLMLDEIDKIGASFQGDPASALLEVLDPEQNGSFRD 480

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
             LD           V  +LS    IA   ++  +  PL DR  + IRL+ Y +E+   I
Sbjct: 481 HYLD-----------VPFDLSNVLFIATANQLDTIPAPLLDRMEV-IRLSGYVLEEKMEI 528

Query: 192 VQR 194
            +R
Sbjct: 529 ARR 531


>gi|15617460|gb|AAL02426.1|AF287273_1 DNA replication accessory factor Cutlet [Drosophila melanogaster]
          Length = 993

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 17/27 (62%), Positives = 18/27 (66%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFR 83
            L  GPPGLGKTTLA  +AR  G N R
Sbjct: 423 ALLCGPPGLGKTTLAHTIARHAGYNVR 449


>gi|73663554|ref|YP_302335.1| ATP-dependent Zn metallopeptidase [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
 gi|72496069|dbj|BAE19390.1| ATP-dependent Zn metallopeptidase [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
          Length = 696

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E G  F S SG       V   A  +  L  N +     +
Sbjct: 202 VLLVGPPGTGKTLLARAVAGEAGTPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 261

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 262 IFIDEI 267


>gi|17554730|ref|NP_498521.1| RFC (DNA replication factor) family member (rfc-4)
          [Caenorhabditis elegans]
 gi|1703051|sp|P53016|RFC4_CAEEL RecName: Full=Replication factor C subunit 4; AltName:
          Full=Activator 1 subunit 4
 gi|1072162|gb|AAA81689.1| Rfc (dna replication factor) family protein 4, confirmed by
          transcript evidence [Caenorhabditis elegans]
          Length = 334

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+TL++   Q E  + LK        +   L H+LF GPPG GKT+ A    R+L
Sbjct: 22 RPKTLDDIAYQDEVVTMLK-----GALQGRDLPHLLFYGPPGTGKTSAALAFCRQL 72


>gi|119714708|ref|YP_921673.1| Mername-AA223 peptidase [Nocardioides sp. JS614]
 gi|119535369|gb|ABL79986.1| membrane protease FtsH catalytic subunit [Nocardioides sp. JS614]
          Length = 681

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 33/58 (56%), Gaps = 4/58 (6%)

Query: 34  VEACSNLKVFI-EAAKARA---EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           +E    +K F+ E AK +A   +    VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 172 IEELGEIKEFLQEPAKFQAVGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISG 229


>gi|71028744|ref|XP_764015.1| replication factor C subunit 3 [Theileria parva strain Muguga]
 gi|68350969|gb|EAN31732.1| replication factor C subunit 3, putative [Theileria parva]
          Length = 347

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP TL++     +  S L +F E  +     L H+LF GPPG GKT+    ++R L
Sbjct: 14 RPETLQDIISHEDIMSTLMIFAEKGQ-----LPHLLFHGPPGSGKTSTILAISRYL 64


>gi|134118754|ref|XP_771880.1| hypothetical protein CNBN0610 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50254484|gb|EAL17233.1| hypothetical protein CNBN0610 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 373

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 5/60 (8%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +   RP +L++     +  S ++ FIEA +     L H+L  GPPG GKT+    +AR L
Sbjct: 57  VEKYRPVSLDDVVSHKDITSTIEKFIEAGR-----LPHLLLYGPPGTGKTSTVLALARRL 111


>gi|332158940|ref|YP_004424219.1| cell division control protein [Pyrococcus sp. NA2]
 gi|331034403|gb|AEC52215.1| cell division control protein [Pyrococcus sp. NA2]
          Length = 840

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 52/116 (44%), Gaps = 16/116 (13%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
           T E+  G  +A   ++  +E      E  +         VL  GPPG GKT LA+ VA E
Sbjct: 210 TYEDIGGLKDAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANE 269

Query: 78  LGVNFRSTSGPVIAKA--GD----LAALLTNLEDR--DVLFIDEIHRLSIIVEEIL 125
               F + +GP I     G+    L  +    E+    ++FIDEI  ++   EE++
Sbjct: 270 ANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKREEVV 325



 Score = 37.7 bits (86), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT LA+ VA E   NF +  GP +
Sbjct: 584 ILLYGPPGTGKTLLAKAVATESQANFIAIRGPEV 617


>gi|323140178|ref|ZP_08075161.1| ATP-dependent metalloprotease FtsH [Methylocystis sp. ATCC 49242]
 gi|322394566|gb|EFX97184.1| ATP-dependent metalloprotease FtsH [Methylocystis sp. ATCC 49242]
          Length = 453

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL VGPPG GKT LA+ +A E GV F S SG    +   G  A+ + ++ D+       +
Sbjct: 195 VLLVGPPGTGKTLLARAIAGEAGVPFFSISGSHFVEMFVGVGASRVRDMFDQAKKNAPCI 254

Query: 109 LFIDEI 114
           +F+DEI
Sbjct: 255 VFVDEI 260


>gi|312875754|ref|ZP_07735749.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners
          LEAF 2053A-b]
 gi|311088746|gb|EFQ47195.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners
          LEAF 2053A-b]
          Length = 583

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 6/77 (7%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
          RPRT E   GQ   C  L+  I+  K     + H  LF GP G GKT+ A++ A+ +   
Sbjct: 11 RPRTFEAVVGQSAICDTLRNSIKRHK-----ISHAFLFSGPRGTGKTSCAKIFAKAINCM 65

Query: 82 FRSTSGPVIAKAGDLAA 98
                P    +  LAA
Sbjct: 66 DSKDGEPCNQCSNCLAA 82


>gi|309805430|ref|ZP_07699477.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners
          LactinV 09V1-c]
 gi|308165248|gb|EFO67484.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners
          LactinV 09V1-c]
          Length = 583

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 6/77 (7%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
          RPRT E   GQ   C  L+  I+  K     + H  LF GP G GKT+ A++ A+ +   
Sbjct: 11 RPRTFEAVVGQSAICDTLRNSIKRHK-----ISHAFLFSGPRGTGKTSCAKIFAKAINCM 65

Query: 82 FRSTSGPVIAKAGDLAA 98
                P    +  LAA
Sbjct: 66 DSKDGEPCNQCSNCLAA 82


>gi|302786134|ref|XP_002974838.1| hypothetical protein SELMODRAFT_150045 [Selaginella moellendorffii]
 gi|300157733|gb|EFJ24358.1| hypothetical protein SELMODRAFT_150045 [Selaginella moellendorffii]
          Length = 888

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 90/214 (42%), Gaps = 35/214 (16%)

Query: 8   LSRNVSQEDADISLL--RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPG 64
           L   +S E+ ++ L+  + R   E  G  +    +  ++   K + +A   VL FVGPPG
Sbjct: 351 LPWQISSEERELDLVAAKERLDSEHYGLGKVKKRIIEYLAVRKLKPDARGPVLCFVGPPG 410

Query: 65  LGKTTLAQVVARELGVNF-RSTSGPVIAKA---GDLAALLTNLEDR------------DV 108
           +GKT+LA  +A  LG  F R + G V  +A   G     + ++  R             V
Sbjct: 411 VGKTSLASSIAGALGRLFIRISLGGVKDEADIRGHRRTYIGSMPGRLIEGIKRVGVNNPV 470

Query: 109 LFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAAT 160
           + +DEI +    V         E+L P       D  +       +V  +LS+   +A  
Sbjct: 471 MLLDEIDKTGTDVRGDPASALLEVLDPEQNRTFNDHYL-------NVPFDLSKVVFVATA 523

Query: 161 TRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
            R+  ++ PL DR  + I L  Y  E+   I  R
Sbjct: 524 NRIQPISPPLLDRMEV-IELPGYTSEEKLCIAMR 556


>gi|289705666|ref|ZP_06502051.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Micrococcus
           luteus SK58]
 gi|289557614|gb|EFD50920.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Micrococcus
           luteus SK58]
          Length = 432

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDV 108
           ++L VGP G GKT LAQ +AR L V F       + +AG +   + N+        D DV
Sbjct: 125 NILMVGPTGSGKTYLAQTLARRLNVPFAVADATSLTEAGYVGEDVENILLKLIQAADYDV 184

Query: 109 -------LFIDEIHRLS 118
                  ++IDEI ++S
Sbjct: 185 KKAEQGIIYIDEIDKIS 201


>gi|288958488|ref|YP_003448829.1| cell division protease [Azospirillum sp. B510]
 gi|288910796|dbj|BAI72285.1| cell division protease [Azospirillum sp. B510]
          Length = 593

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL------EDRDV 108
           +L VGPPG GKT LA+  A E GV F + SG    +   G  AA + NL          +
Sbjct: 190 LLLVGPPGTGKTMLAKAAAGEAGVPFFAASGSDFVEMFVGLGAARVRNLFKTARASAPCI 249

Query: 109 LFIDEIHRLS 118
           LFIDEI  L+
Sbjct: 250 LFIDEIDALA 259


>gi|262277076|ref|ZP_06054869.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [alpha
           proteobacterium HIMB114]
 gi|262224179|gb|EEY74638.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [alpha
           proteobacterium HIMB114]
          Length = 423

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 23/101 (22%)

Query: 32  GQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA 91
           G  E  SN    +E AK+      ++L +GP G GKT LAQ +A+ L V F       + 
Sbjct: 95  GHTEKSSN---DVELAKS------NILLIGPTGCGKTLLAQTLAKILDVPFTMADATTLT 145

Query: 92  KAGDLAALLTNL--------------EDRDVLFIDEIHRLS 118
           +AG +   + N+                R +++IDE+ ++S
Sbjct: 146 EAGYVGEDVENIILKLLQAADYNVEKAQRGIVYIDEVDKIS 186


>gi|255038784|ref|YP_003089405.1| ATP-dependent metalloprotease FtsH [Dyadobacter fermentans DSM
           18053]
 gi|254951540|gb|ACT96240.1| ATP-dependent metalloprotease FtsH [Dyadobacter fermentans DSM
           18053]
          Length = 685

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 47/104 (45%), Gaps = 15/104 (14%)

Query: 26  TLEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  EA   +K  +E         K  A+     L VGPPG GKT LA+ VA E 
Sbjct: 195 TFNDVAGLDEAKEEIKEIVEYLQSPDKFKKLGAKIPKGALLVGPPGTGKTLLAKAVAGEA 254

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEI 114
           GV F S SG       V   A  +  L    +++   ++FIDEI
Sbjct: 255 GVPFFSLSGSDFVEMFVGVGAARVRDLFKQAKEKAPCIIFIDEI 298


>gi|242054017|ref|XP_002456154.1| hypothetical protein SORBIDRAFT_03g031360 [Sorghum bicolor]
 gi|241928129|gb|EES01274.1| hypothetical protein SORBIDRAFT_03g031360 [Sorghum bicolor]
          Length = 519

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLED------RDV 108
           VL  GPPG GKT LA+ VA E G  F + S   +A    G+   ++  L D         
Sbjct: 271 VLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPST 330

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 331 IFIDEIDSL 339


>gi|238061465|ref|ZP_04606174.1| ATP-dependent metalloprotease ftsH [Micromonospora sp. ATCC 39149]
 gi|237883276|gb|EEP72104.1| ATP-dependent metalloprotease ftsH [Micromonospora sp. ATCC 39149]
          Length = 671

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 33/59 (55%), Gaps = 6/59 (10%)

Query: 34  VEACSNLKVFIEAAKARAEAL-----DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VE    +K F++   A+ +AL       VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 181 VEELHEIKDFLQNP-AKYQALGAKIPKGVLLFGPPGTGKTLLARAVAGEAGVPFYSISG 238


>gi|225571155|ref|ZP_03780153.1| hypothetical protein CLOHYLEM_07243 [Clostridium hylemonae DSM
           15053]
 gi|225159986|gb|EEG72605.1| hypothetical protein CLOHYLEM_07243 [Clostridium hylemonae DSM
           15053]
          Length = 615

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F + SG
Sbjct: 204 VLLVGPPGTGKTLLAKAVAGEAGVPFFTISG 234


>gi|289579864|ref|YP_003478330.1| ATPase AAA, CDC48 subfamily [Natrialba magadii ATCC 43099]
 gi|289529417|gb|ADD03768.1| AAA family ATPase, CDC48 subfamily [Natrialba magadii ATCC 43099]
          Length = 742

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 8/76 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNL------EDRDV 108
           VL  GPPG GKT LA+ VA E   +F S +GP +I+K  G+    L  +      E   +
Sbjct: 226 VLLHGPPGTGKTLLAKAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDASEESPAI 285

Query: 109 LFIDEIHRLSIIVEEI 124
           +FIDE+  ++   E++
Sbjct: 286 IFIDELDSIAPKREDV 301



 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT +A+ VA E   NF S  GP
Sbjct: 499 VLLYGPPGTGKTLMAKAVANETNANFISVRGP 530


>gi|224141399|ref|XP_002324060.1| predicted protein [Populus trichocarpa]
 gi|222867062|gb|EEF04193.1| predicted protein [Populus trichocarpa]
          Length = 677

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 251 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSG 281


>gi|194707888|gb|ACF88028.1| unknown [Zea mays]
          Length = 516

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLED------RDV 108
           VL  GPPG GKT LA+ VA E G  F + S   +A    G+   ++  L D         
Sbjct: 268 VLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPST 327

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 328 IFIDEIDSL 336


>gi|218245487|ref|YP_002370858.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8801]
 gi|257058522|ref|YP_003136410.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8802]
 gi|218165965|gb|ACK64702.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8801]
 gi|256588688|gb|ACU99574.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8802]
          Length = 628

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 209 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 239


>gi|170030497|ref|XP_001843125.1| AAA family ATPase [Culex quinquefasciatus]
 gi|167867366|gb|EDS30749.1| AAA family ATPase [Culex quinquefasciatus]
          Length = 640

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108
           VL VGPPG GKT LA+ VA E G  F + S   +     G+   L      +        
Sbjct: 398 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPST 457

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 458 IFIDEIDSL 466


>gi|77993704|gb|ABB13465.1| 26S proteasome subunit RPT4 [Schistosoma mansoni]
          Length = 368

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRS--TSGPVIAKAGDLAALLTNLED--RD----V 108
            L  GPPG GKT LA+ VA +L VNF    +SG V    G+ A L+  + +  RD    +
Sbjct: 176 CLLYGPPGTGKTLLARAVASQLDVNFLKVVSSGIVDKYIGESARLIREMFNYARDHQPCI 235

Query: 109 LFIDEI 114
           +F+DEI
Sbjct: 236 IFMDEI 241


>gi|125527277|gb|EAY75391.1| hypothetical protein OsI_03290 [Oryza sativa Indica Group]
          Length = 519

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLED------RDV 108
           VL  GPPG GKT LA+ VA E G  F + S   +A    G+   ++  L D         
Sbjct: 271 VLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARFYAPST 330

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 331 IFIDEIDSL 339


>gi|145545135|ref|XP_001458252.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124426071|emb|CAK90855.1| unnamed protein product [Paramecium tetraurelia]
          Length = 359

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 82/191 (42%), Gaps = 30/191 (15%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLED------RDV 108
           +LF GPPG GKT LA+ VA ++   F + S   + +   G+   L+  L D        V
Sbjct: 129 ILFYGPPGNGKTLLAKAVANQIKCCFFNISASTLVQKHLGEGEKLMRALFDVAFQLQPSV 188

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +F+DEI  +     +  + A    + + ++       S   +  R  LIAAT R   + +
Sbjct: 189 IFVDEIDSILSKRSQNEHEASRRLKTEFLISFDGIQSS---DQDRVFLIAATNRPQDIDD 245

Query: 169 PLQDRFGIPIRLNFYE----IEDLKTIVQR-------------GAKLTGLAVTDEAAC-- 209
            +  RF + I ++  E    +E +K+++ +               KL G + +D  A   
Sbjct: 246 AVLRRFTVKILIDQPELKVRVEMVKSLLSKVKNNLTEQQFQYVAEKLQGYSASDIKAVVK 305

Query: 210 EIAMRSRGTPR 220
           E  MR   T R
Sbjct: 306 EACMRPLRTDR 316


>gi|119493933|ref|ZP_01624495.1| cell division protein [Lyngbya sp. PCC 8106]
 gi|119452331|gb|EAW33525.1| cell division protein [Lyngbya sp. PCC 8106]
          Length = 628

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 209 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 239


>gi|219666120|ref|YP_002456555.1| DNA polymerase III subunits gamma and tau [Desulfitobacterium
           hafniense DCB-2]
 gi|219536380|gb|ACL18119.1| DNA polymerase III, subunits gamma and tau [Desulfitobacterium
           hafniense DCB-2]
          Length = 554

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 92/353 (26%), Positives = 132/353 (37%), Gaps = 89/353 (25%)

Query: 23  RPRTLEEFTGQVEACSNL-KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           RP+  ++  GQ      L    +++  A A      LF GP G GKTT A+V+A+ L   
Sbjct: 11  RPKNFKDMVGQDHVTKTLTNALMQSKVAHA-----YLFSGPRGTGKTTTAKVLAKALNCE 65

Query: 82  FRSTSGPVIAKAGDL------AALLTNLEDRDVLFIDEIH------RLS--------IIV 121
            R    P    A  L      A  +  ++      IDEI       RLS         I+
Sbjct: 66  HREGVEPCNQCAFCLSIDQGSAMEVFEIDAASNRGIDEIRDLRDKVRLSAGESKYKVYII 125

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           +E+     E F   L   E P  R V         I ATT V  +   +  R     R  
Sbjct: 126 DEVHMLTTEAFNALLKTLEEPPERVV--------FILATTEVHKIPLTILSRVQ---RFE 174

Query: 182 FYEI--EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           F+ I  E + + + +  +  G  V  EA   IA +S G  R A  +L             
Sbjct: 175 FHRIPLEQIHSHLDKVCQTIGRDVEPEALQIIAQKSEGGLRDALSIL------------- 221

Query: 240 TITREIADAALLRLAID-KMGFDQLDLRYLTMIARNFGG---------------GPVGIE 283
                  D  LL   +D K+G +Q+  + L M+   F                 G +G E
Sbjct: 222 -------DQCLL---LDGKLGVEQV-YQVLGMVGEEFSAQLVDHLLTGDYAKALGCLG-E 269

Query: 284 TISAGLSEPRDAIEDLIEPYMIQ-------QGFIQRTPRGRLLMPIAWQHLGI 329
            I+ G+ +PR  I +L++ YM Q       Q F Q  P  R  +    Q LG+
Sbjct: 270 GINQGM-DPRQIIRELLD-YMRQALLYASTQAFPQVAPHLREHLAYQCQKLGL 320


>gi|42561751|ref|NP_563766.3| FTSH8; ATP-dependent peptidase/ ATPase/ metallopeptidase/ zinc ion
           binding [Arabidopsis thaliana]
 gi|75331430|sp|Q8W585|FTSH8_ARATH RecName: Full=ATP-dependent zinc metalloprotease FTSH 8,
           chloroplastic; Short=AtFTSH8; Flags: Precursor
 gi|16930423|gb|AAL31897.1|AF419565_1 At1g06430/F12K11_24 [Arabidopsis thaliana]
 gi|27363292|gb|AAO11565.1| At1g06430/F12K11_24 [Arabidopsis thaliana]
 gi|28392858|gb|AAO41866.1| putative FtsH protease [Arabidopsis thaliana]
 gi|332189865|gb|AEE27986.1| cell division protease ftsH-8 [Arabidopsis thaliana]
          Length = 685

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 256 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 286


>gi|33862949|ref|NP_894509.1| FtsH ATP-dependent protease-like protein [Prochlorococcus marinus
           str. MIT 9313]
 gi|33634866|emb|CAE20852.1| FtsH ATP-dependent protease homolog [Prochlorococcus marinus str.
           MIT 9313]
          Length = 638

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 217 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSG 247


>gi|108763928|ref|YP_630246.1| ATP-dependent protease La [Myxococcus xanthus DK 1622]
 gi|547860|sp|P36773|LON1_MYXXA RecName: Full=Lon protease 1; AltName: Full=ATP-dependent protease
           La 1
 gi|4838466|gb|AAD31005.1|AF127082_4 ATP-dependent protease LonV [Myxococcus xanthus]
 gi|303712|dbj|BAA02307.1| ATP-dependent protease La [Myxococcus xanthus]
 gi|108467808|gb|ABF92993.1| ATP-dependent protease La [Myxococcus xanthus DK 1622]
          Length = 817

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 69/166 (41%), Gaps = 40/166 (24%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           + FVGPPG+GKT+LA+ +AR  G  F R + G V  +A              G L   L 
Sbjct: 364 LCFVGPPGVGKTSLARSIARATGRKFVRLSLGGVRDEAEIRGHRRTYIGAMPGKLIQSLK 423

Query: 102 NL-EDRDVLFIDEIHRLSI--------IVEEILYP----AMEDFQLDLMVGEGPSARSVK 148
               +  V  +DEI ++S          + E+L P       D  LDL            
Sbjct: 424 KAGSNNPVFLLDEIDKMSTDFRGDPSAALLEVLDPEQNHTFNDHYLDL-----------D 472

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
            +LS+   I     +  +  PLQDR  + IR+  Y   +  +I +R
Sbjct: 473 YDLSKVMFICTANTMHNIPGPLQDRMEV-IRIAGYTEPEKLSIARR 517


>gi|330957800|gb|EGH58060.1| peptidase S16, ATP-dependent protease La [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 805

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 70/166 (42%), Gaps = 40/166 (24%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAKAGDLAALLT 101
           VL VGPPG+GKT++ + +A  LG  F   S                 + A+ G L   L 
Sbjct: 387 VLLVGPPGVGKTSVGRSIAESLGRPFYRLSVGGMRDEAEIKGHRRTYIGAQPGKLVQALK 446

Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAME----DFQLDLMVGEGPSARSVK 148
           ++E  + V+ +DEI ++    +        E L P       D  LDL           +
Sbjct: 447 DVEVMNPVIMLDEIDKMGQSYQGDPASALLETLDPEQNVEFLDHYLDL-----------R 495

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           ++LS+   +     +  +  PL DR  + IRL+ Y  E+   I +R
Sbjct: 496 LDLSKVLFVCTANTLDSIPGPLLDRMEV-IRLSGYITEEKLAIAKR 540


>gi|329114675|ref|ZP_08243434.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Acetobacter
           pomorum DM001]
 gi|326696155|gb|EGE47837.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Acetobacter
           pomorum DM001]
          Length = 421

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+         
Sbjct: 109 AKSNILLIGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASD 168

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDEI ++S
Sbjct: 169 YNVERAQRGIVYIDEIDKIS 188


>gi|310790313|gb|EFQ25846.1| ATPase [Glomerella graminicola M1.001]
          Length = 2283

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 13/72 (18%)

Query: 59   FVGPPGLGKTTLAQVVAREL-------GVNFRSTSGPVIAKAGDLAALLTNLEDR----- 106
             +G PG GKTT+A++ ++ L       G  F+ TSG  +A  G +AA    LED      
Sbjct: 1323 LLGNPGTGKTTVARIYSKFLTSVGVIAGSGFKETSGSKLASMG-VAACQKMLEDMLNDGG 1381

Query: 107  DVLFIDEIHRLS 118
             V+FIDE ++LS
Sbjct: 1382 GVVFIDEAYQLS 1393


>gi|310830691|ref|YP_003965792.1| Probable metalloprotease transmembrane protein [Paenibacillus
           polymyxa SC2]
 gi|309250158|gb|ADO59724.1| Probable metalloprotease transmembrane protein [Paenibacillus
           polymyxa SC2]
          Length = 606

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 15/104 (14%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  EA  +++  ++  K         A+    V+F GPPG GKT  A+ +A E 
Sbjct: 170 TFKQIAGHEEAKEDMQYLVDFLKNPLNYTIMGAKLPKGVIFYGPPGTGKTLFAKALAGEA 229

Query: 79  GVNFRSTSGP-----VIAKAGDLAALLTNLEDRD---VLFIDEI 114
           GV F S SG       +         + NL  +    ++FIDEI
Sbjct: 230 GVPFFSVSGSDFVEKYVGTGASRVRDMFNLARKKAPCIIFIDEI 273


>gi|283457233|ref|YP_003361803.1| ATP-dependent Zn protease [Rothia mucilaginosa DY-18]
 gi|310946761|sp|D2NQQ7|FTSH_ROTMD RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|283133218|dbj|BAI63983.1| ATP-dependent Zn protease [Rothia mucilaginosa DY-18]
          Length = 756

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 237 VLLYGPPGTGKTLLAKAVAGEAGVPFYSISG 267


>gi|269957762|ref|YP_003327551.1| ATP-dependent metalloprotease FtsH [Xylanimonas cellulosilytica DSM
           15894]
 gi|269306443|gb|ACZ31993.1| ATP-dependent metalloprotease FtsH [Xylanimonas cellulosilytica DSM
           15894]
          Length = 669

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 95/223 (42%), Gaps = 39/223 (17%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           VL  GPPG GKT LA+ VA E GV F S SG    +   G  A+ + +L ++       +
Sbjct: 205 VLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFEQAKQNAPAI 264

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINL-----------SRFTLI 157
           +F+DEI  +                    +G G   R   +N            +   LI
Sbjct: 265 IFVDEIDAVG-------------RHRGAGMGGGHDEREQTLNQLLVEMDGFDVKTNVILI 311

Query: 158 AATTRVGLLTNPL--QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRS 215
           AAT R  +L   L    RF   I +   +++  + I+Q  AK   +      A ++A  +
Sbjct: 312 AATNRPDILDPALLRPGRFDRQIAVEAPDLKGREAILQVHAKGKPMV----PAVDLAAVA 367

Query: 216 RGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKM 258
           R TP   G  L  V + A +  A++  + I D AL   AID++
Sbjct: 368 RRTPGFTGADLANVLNEAALLTARSGAQLIDDRALDE-AIDRV 409


>gi|293330979|ref|NP_001168687.1| hypothetical protein LOC100382477 [Zea mays]
 gi|223950229|gb|ACN29198.1| unknown [Zea mays]
          Length = 516

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLED------RDV 108
           VL  GPPG GKT LA+ VA E G  F + S   +A    G+   ++  L D         
Sbjct: 268 VLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPST 327

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 328 IFIDEIDSL 336


>gi|223944623|gb|ACN26395.1| unknown [Zea mays]
          Length = 518

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLED------RDV 108
           VL  GPPG GKT LA+ VA E G  F + S   +A    G+   ++  L D         
Sbjct: 270 VLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPST 329

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 330 IFIDEIDSL 338


>gi|223042117|ref|ZP_03612289.1| ATP-dependent Clp protease ATP-binding subunit [Actinobacillus
           minor 202]
 gi|223017094|gb|EEF15534.1| ATP-dependent Clp protease ATP-binding subunit [Actinobacillus
           minor 202]
          Length = 414

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LA+ +AR L V F       + +AG +   + N+            
Sbjct: 117 NILLIGPTGSGKTLLAETLARRLNVPFAVADATTLTQAGYVGEDVENVIQKLLMKCDFDP 176

Query: 104 --EDRDVLFIDEIHRLS 118
              +R ++FIDEI +++
Sbjct: 177 EQAERGIVFIDEIDKIT 193


>gi|210076057|ref|XP_505704.2| YALI0F21329p [Yarrowia lipolytica]
 gi|199424971|emb|CAG78513.2| YALI0F21329p [Yarrowia lipolytica]
          Length = 845

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 605 VLLWGPPGCGKTLLAKAVASETAANFISVRGP 636



 Score = 37.0 bits (84), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL--EDRDV---- 108
           VL  GPPG GKT LA  +A +  V F S S P +    +G+    +  +  E R +    
Sbjct: 245 VLLHGPPGCGKTVLANAIANKAQVPFMSISAPSVVSGMSGESEKKIREIFEEARAIAPCL 304

Query: 109 LFIDEIHRLS 118
           LFIDEI  ++
Sbjct: 305 LFIDEIDAVT 314


>gi|195471147|ref|XP_002087867.1| GE14801 [Drosophila yakuba]
 gi|194173968|gb|EDW87579.1| GE14801 [Drosophila yakuba]
          Length = 993

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 18/26 (69%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFR 83
           L  GPPGLGKTTLA  +AR  G N R
Sbjct: 424 LLCGPPGLGKTTLAHTIARHAGYNVR 449


>gi|195148000|ref|XP_002014962.1| GL19453 [Drosophila persimilis]
 gi|194106915|gb|EDW28958.1| GL19453 [Drosophila persimilis]
          Length = 756

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 17/27 (62%), Positives = 18/27 (66%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFR 83
            L  GPPGLGKTTLA  +AR  G N R
Sbjct: 423 ALLCGPPGLGKTTLAHTIARHAGYNVR 449


>gi|189206397|ref|XP_001939533.1| ATP-dependent protease La [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187975626|gb|EDU42252.1| ATP-dependent protease La [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 923

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 69/163 (42%), Gaps = 33/163 (20%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTS-GPVIAKA----------GDLAALLTNLED 105
           +L VGPPG+GKT+LA+ VA  LG  F   S G V  +A            +  L+ N   
Sbjct: 476 LLLVGPPGVGKTSLAKSVATALGRKFHRISLGGVRDEAEIRGHRRTYVAAMPGLIVNGLK 535

Query: 106 R-----DVLFIDEIHRLSIIVE---------EILYPAMEDFQLDLMVGEGPSARSVKINL 151
           +      V  +DEI +L ++           E+L P       D  V       ++ I+L
Sbjct: 536 KVGVANPVFLLDEIDKLGMMNHNGDPGAAMLEVLDPEQNHTFTDHYV-------NIPIDL 588

Query: 152 SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           S+   IA    +  +  PL DR    I+L+ Y   + + I  R
Sbjct: 589 SKVLFIATANSLDTIPPPLLDRMET-IQLSGYTTLEKRHIAAR 630


>gi|209885040|ref|YP_002288897.1| ATP-dependent Clp protease [Oligotropha carboxidovorans OM5]
 gi|229484078|sp|B6JGU8|CLPX_OLICO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|209873236|gb|ACI93032.1| ATP-dependent Clp protease [Oligotropha carboxidovorans OM5]
          Length = 424

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+         
Sbjct: 110 AKSNILLIGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 169

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDEI ++S
Sbjct: 170 YNVERAQRGIVYIDEIDKIS 189


>gi|187830110|ref|NP_001120721.1| filamentation temperature-sensitive H 2B [Zea mays]
 gi|166093209|gb|ABY82590.1| filamentation temperature-sensitive H 2B [Zea mays]
 gi|166093213|gb|ABY82592.1| filamentation temperature-sensitive H 2B [Zea mays]
          Length = 677

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 250 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 280


>gi|167759637|ref|ZP_02431764.1| hypothetical protein CLOSCI_01995 [Clostridium scindens ATCC 35704]
 gi|167662763|gb|EDS06893.1| hypothetical protein CLOSCI_01995 [Clostridium scindens ATCC 35704]
          Length = 614

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F + SG
Sbjct: 203 VLLVGPPGTGKTLLAKAVAGEAGVPFFTISG 233


>gi|124023247|ref|YP_001017554.1| FtsH ATP-dependent protease-like protein [Prochlorococcus marinus
           str. MIT 9303]
 gi|123963533|gb|ABM78289.1| FtsH ATP-dependent protease-like protein [Prochlorococcus marinus
           str. MIT 9303]
          Length = 638

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 217 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSG 247


>gi|167646808|ref|YP_001684471.1| ATP-dependent protease ATP-binding subunit ClpX [Caulobacter sp.
           K31]
 gi|189082487|sp|B0SZ62|CLPX_CAUSK RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|167349238|gb|ABZ71973.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Caulobacter
           sp. K31]
          Length = 420

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L VGP G GKT LAQ +AR + V F       + +AG +   + N+         
Sbjct: 110 AKSNILLVGPTGTGKTLLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIVLKLLQAAD 169

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDEI ++S
Sbjct: 170 YNVERAQRGIVYIDEIDKIS 189


>gi|115469444|ref|NP_001058321.1| Os06g0669400 [Oryza sativa Japonica Group]
 gi|113596361|dbj|BAF20235.1| Os06g0669400 [Oryza sativa Japonica Group]
          Length = 609

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 183 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 213


>gi|84468324|dbj|BAE71245.1| putative zinc dependent protease [Trifolium pratense]
          Length = 702

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 276 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 306


>gi|158313819|ref|YP_001506327.1| ATP-dependent metalloprotease FtsH [Frankia sp. EAN1pec]
 gi|158109224|gb|ABW11421.1| ATP-dependent metalloprotease FtsH [Frankia sp. EAN1pec]
          Length = 659

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 114/273 (41%), Gaps = 31/273 (11%)

Query: 6   GLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH----VLFV 60
           G+  R+ ++  +AD    R   +  + G  +  S +  F+       E   H    VL V
Sbjct: 168 GMFGRSRAKITEADRPDTRFSDVAGYEGAKQEISEVVAFLRNPDQYLEVGAHGPRGVLMV 227

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DVLFID 112
           GPPG GKT LA+ VA E  V F S +G       V   A  +  L T    R   ++FID
Sbjct: 228 GPPGTGKTLLARAVAGEAEVPFLSITGSGFVEMFVGVGASRVRDLFTEARKRAPSIIFID 287

Query: 113 EIHRLSIIVEEILYPAMEDFQ---LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           EI  +        +    D +   L+ ++ E     S     S   ++AAT R   L + 
Sbjct: 288 EIDAIGGRRGSSAFGGSNDEREQTLNQLLAEMDGFEST----SGVVVLAATNRPETLDHA 343

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLT----GLAVTDEAACEIAMRSRGTPRIAGRL 225
           L      P R +      L T  +R   L     G A+TD+A  ++   +RGTP  +G  
Sbjct: 344 LLR----PGRFDRQVTVPLPTQSERAEILAVHTRGKALTDDA--DLTRIARGTPGFSGAD 397

Query: 226 LRRVRDFAEVAHAKTITREIADAALLRLAIDKM 258
           L  + + A + +A    R +  AA L  A D++
Sbjct: 398 LASLVNEAAI-NAVRDGRSVVSAADLDAARDRI 429


>gi|328953179|ref|YP_004370513.1| ATP-dependent metalloprotease FtsH [Desulfobacca acetoxidans DSM
           11109]
 gi|328453503|gb|AEB09332.1| ATP-dependent metalloprotease FtsH [Desulfobacca acetoxidans DSM
           11109]
          Length = 624

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 196 VLLVGPPGTGKTLLARAIAGEAGVPFFSISG 226


>gi|325912930|ref|ZP_08175304.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners
          UPII 60-B]
 gi|325477744|gb|EGC80882.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners
          UPII 60-B]
          Length = 583

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 6/77 (7%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
          RPRT E   GQ   C  L+  I+  K     + H  LF GP G GKT+ A++ A+ +   
Sbjct: 11 RPRTFEAVVGQSAICDTLRNSIKRHK-----ISHAFLFSGPRGTGKTSCAKIFAKAINCM 65

Query: 82 FRSTSGPVIAKAGDLAA 98
                P    +  LAA
Sbjct: 66 DSKDGEPCNQCSNCLAA 82


>gi|312870907|ref|ZP_07731012.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners
          LEAF 3008A-a]
 gi|311093597|gb|EFQ51936.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners
          LEAF 3008A-a]
          Length = 583

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 6/77 (7%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
          RPRT E   GQ   C  L+  I+  K     + H  LF GP G GKT+ A++ A+ +   
Sbjct: 11 RPRTFEAVVGQSAICDTLRNSIKRHK-----ISHAFLFSGPRGTGKTSCAKIFAKAINCM 65

Query: 82 FRSTSGPVIAKAGDLAA 98
                P    +  LAA
Sbjct: 66 DSKDGEPCNQCSNCLAA 82


>gi|307110169|gb|EFN58405.1| hypothetical protein CHLNCDRAFT_140338 [Chlorella variabilis]
          Length = 881

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 18/32 (56%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
            L  GPPG GKT LAQ  A   G NF S  GP
Sbjct: 556 ALLYGPPGCGKTLLAQAAASRCGANFLSVRGP 587


>gi|299135042|ref|ZP_07028233.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Afipia sp.
           1NLS2]
 gi|298590019|gb|EFI50223.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Afipia sp.
           1NLS2]
          Length = 424

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+         
Sbjct: 110 AKSNILLIGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 169

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDEI ++S
Sbjct: 170 YNVERAQRGIVYIDEIDKIS 189


>gi|295094514|emb|CBK83605.1| ATP-dependent metalloprotease FtsH [Coprococcus sp. ART55/1]
          Length = 680

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT +A+ +A E GV F S SG
Sbjct: 231 VLLVGPPGTGKTLMAKAIAGEAGVPFFSISG 261


>gi|260892395|ref|YP_003238492.1| Sigma 54 interacting domain protein [Ammonifex degensii KC4]
 gi|260864536|gb|ACX51642.1| Sigma 54 interacting domain protein [Ammonifex degensii KC4]
          Length = 557

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 5/78 (6%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           R +S  +     +RP++  E  GQ EA   L+  +     +     HVL  GPPG+GKT 
Sbjct: 55  RAISLSEPLAEKVRPQSFAEIVGQEEAIKALRAALCGPHPQ-----HVLLYGPPGVGKTA 109

Query: 70  LAQVVARELGVNFRSTSG 87
            A++V  E   N  S  G
Sbjct: 110 AARLVLEEAKHNPLSPFG 127


>gi|302530789|ref|ZP_07283131.1| cell division protein [Streptomyces sp. AA4]
 gi|302439684|gb|EFL11500.1| cell division protein [Streptomyces sp. AA4]
          Length = 667

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 33/59 (55%), Gaps = 6/59 (10%)

Query: 34  VEACSNLKVFIEAAKARAEAL-----DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VE    +K F++   AR +AL       VL  GPPG GKT LA+ VA E GV F + SG
Sbjct: 49  VEELYEIKDFLQNP-ARYQALGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYTISG 106


>gi|255326126|ref|ZP_05367213.1| cell division protease FtsH [Rothia mucilaginosa ATCC 25296]
 gi|255296837|gb|EET76167.1| cell division protease FtsH [Rothia mucilaginosa ATCC 25296]
          Length = 724

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 216 VLLYGPPGTGKTLLAKAVAGEAGVPFYSISG 246


>gi|227832004|ref|YP_002833711.1| DNA polymerase III, gamma and tau subunit [Corynebacterium
          aurimucosum ATCC 700975]
 gi|227453020|gb|ACP31773.1| DNA polymerase III, gamma and tau subunit [Corynebacterium
          aurimucosum ATCC 700975]
          Length = 868

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 6/68 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
          RP T  E  GQ +  + L   ++A +     ++H  LF GP G GKT+ A+++AR L   
Sbjct: 8  RPATFAEVVGQEQVTTPLSAALDAGR-----INHAYLFSGPRGCGKTSSARIMARSLNCE 62

Query: 82 FRSTSGPV 89
             TS P 
Sbjct: 63 QGPTSTPC 70


>gi|210134230|ref|YP_002300669.1| ATP-dependent clp protease [Helicobacter pylori P12]
 gi|210132198|gb|ACJ07189.1| ATP-dependent clp protease [Helicobacter pylori P12]
          Length = 741

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 74/187 (39%), Gaps = 38/187 (20%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFR------------------STSGPVIAKAGDLAAL 99
           LFVGP G+GKT LA+ +A  L ++F                   S SG V  + G L   
Sbjct: 480 LFVGPSGVGKTELAKELALNLNLHFERFDMSEYKEAHSVAKLIGSPSGYVGFEQGGLLVN 539

Query: 100 LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSV------------ 147
                   +L +DEI +    V ++L   M++  L   +G   S + V            
Sbjct: 540 AIKKHPHCLLLLDEIEKAHSNVYDLLLQVMDNATLSDNLGNQASFKHVILIMTSNVGSKD 599

Query: 148 KINLSRFTLIAATTRVG-----LLTNPLQDRFGIPIRLNFYEIEDLKTIVQ-RGAKLTGL 201
           K  L  F+  A  T+       LLT  LQ R    +  N   +ED + IV     KL  L
Sbjct: 600 KDTLGFFS--AKNTKYDRAVKELLTPELQSRIDAIVPFNALSLEDFERIVSVELDKLKAL 657

Query: 202 AVTDEAA 208
           A+  + A
Sbjct: 658 ALEQDIA 664


>gi|195387666|ref|XP_002052515.1| GJ17580 [Drosophila virilis]
 gi|194148972|gb|EDW64670.1| GJ17580 [Drosophila virilis]
          Length = 994

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 18/26 (69%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFR 83
           L  GPPGLGKTTLA  +AR  G N R
Sbjct: 420 LLCGPPGLGKTTLAHTIARHAGYNVR 445


>gi|220927298|ref|YP_002502600.1| AAA family ATPase, CDC48 subfamily [Methylobacterium nodulans ORS
           2060]
 gi|219951905|gb|ACL62297.1| AAA family ATPase, CDC48 subfamily [Methylobacterium nodulans ORS
           2060]
          Length = 757

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 8/71 (11%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRST-SGPVIAK-AGDLAALLTNLEDR------DVL 109
           L  GPPG GKT LA+ VARE   NF +T S  +++K  G+    ++ L  R       V+
Sbjct: 514 LLFGPPGTGKTLLAKAVAREASANFVATKSSDLLSKWYGESEQQVSRLFARARQVAPTVI 573

Query: 110 FIDEIHRLSII 120
           FIDEI  L+ +
Sbjct: 574 FIDEIDSLAPV 584



 Score = 38.1 bits (87), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 8/75 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLAALLTNL---EDRD---V 108
           VL  GPPG GKT LA+ VA E    F   +GP I  ++ G+    L  +     R+   +
Sbjct: 241 VLLYGPPGTGKTLLARAVANETEAQFFHIAGPEIMGSQYGESEQRLRQIFSEAQRNAPAI 300

Query: 109 LFIDEIHRLSIIVEE 123
           +FIDEI  ++   EE
Sbjct: 301 IFIDEIDSIAPKREE 315


>gi|160878301|ref|YP_001557269.1| ATP-dependent metalloprotease FtsH [Clostridium phytofermentans
           ISDg]
 gi|160426967|gb|ABX40530.1| ATP-dependent metalloprotease FtsH [Clostridium phytofermentans
           ISDg]
          Length = 609

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 43/89 (48%), Gaps = 11/89 (12%)

Query: 34  VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP----- 88
           V+   N K FI+     A     VL  GPPG GKT LA+ VA E GV F S SG      
Sbjct: 180 VDFLKNPKKFIQVG---ARIPKGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 236

Query: 89  -VIAKAGDLAALLTNLEDRD--VLFIDEI 114
            V   A  +  L +  +  +  ++FIDEI
Sbjct: 237 FVGVGASRVRDLFSEAKKNNPCIIFIDEI 265


>gi|58270968|ref|XP_572640.1| hypothetical protein CNI03110 [Cryptococcus neoformans var.
           neoformans JEC21]
 gi|57228899|gb|AAW45333.1| hypothetical protein CNI03110 [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 1124

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 4/48 (8%)

Query: 41  KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           ++F E  K R+     +L  GPPG GKT LA+ VA    +NF S  GP
Sbjct: 805 EMFGEGLKKRS----GILLYGPPGTGKTLLAKAVATSFSLNFFSVKGP 848


>gi|76802633|ref|YP_330728.1| AAA-type ATPase (transitional ATPase homolog) [Natronomonas
           pharaonis DSM 2160]
 gi|76558498|emb|CAI50090.1| AAA-type ATPase (transitional ATPase homolog) [Natronomonas
           pharaonis DSM 2160]
          Length = 759

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DV 108
           VL  GPPG GKT +A+ VA E+  +F   SGP I     G+    L  + D        +
Sbjct: 233 VLLHGPPGTGKTLMAKAVANEIDAHFTDISGPEIMSKYYGESEEQLREVFDEASENAPAI 292

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 293 VFIDEIDSIA 302



 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 18/37 (48%), Positives = 22/37 (59%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +A   VL  GPPG GKT +A+ +A E   NF S  GP
Sbjct: 501 QAAKGVLLYGPPGTGKTLMAKAIANEAQSNFISIKGP 537


>gi|16331432|ref|NP_442160.1| cell division protein FtsH [Synechocystis sp. PCC 6803]
 gi|2492510|sp|Q55700|FTSH2_SYNY3 RecName: Full=ATP-dependent zinc metalloprotease FtsH 2
 gi|1001602|dbj|BAA10230.1| cell division protein; FtsH [Synechocystis sp. PCC 6803]
          Length = 627

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 208 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 238


>gi|27380054|ref|NP_771583.1| ATP-dependent protease ATP-binding subunit ClpX [Bradyrhizobium
           japonicum USDA 110]
 gi|46576546|sp|Q89KG2|CLPX_BRAJA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|27353208|dbj|BAC50208.1| ATP-dependent Clp protease ATP-binding subunit [Bradyrhizobium
           japonicum USDA 110]
          Length = 423

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+         
Sbjct: 110 AKSNILLIGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 169

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDEI ++S
Sbjct: 170 YNVERAQRGIVYIDEIDKIS 189


>gi|16126204|ref|NP_420768.1| ATP-dependent protease ATP-binding subunit [Caulobacter crescentus
           CB15]
 gi|221234976|ref|YP_002517412.1| ATP-dependent protease ATP-binding subunit ClpX [Caulobacter
           crescentus NA1000]
 gi|239977101|sp|B8GX14|CLPX_CAUCN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|239977102|sp|P0CAU2|CLPX_CAUCR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|3688207|emb|CAA09092.1| clpX protein [Caulobacter crescentus CB15]
 gi|13423422|gb|AAK23936.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Caulobacter
           crescentus CB15]
 gi|220964148|gb|ACL95504.1| ATP-dependent endopeptidase clp, ATP-binding subunit ClpX
           [Caulobacter crescentus NA1000]
          Length = 420

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L VGP G GKT LAQ +AR + V F       + +AG +   + N+         
Sbjct: 110 AKSNILLVGPTGTGKTLLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIVLKLLQAAD 169

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDEI ++S
Sbjct: 170 YNVERAQRGIVYIDEIDKIS 189


>gi|116513517|ref|YP_812423.1| ATP-dependent Zn protease [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|116092832|gb|ABJ57985.1| membrane protease FtsH catalytic subunit [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
          Length = 690

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108
           VL  GPPG GKT LA+ VA E GV F   SG       V   A  +  L TN +     +
Sbjct: 178 VLLEGPPGTGKTLLAKAVAGEAGVPFFYISGSDFVEMFVGVGASRVRDLFTNAKKNAPSI 237

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 238 IFIDEI 243


>gi|329920997|ref|ZP_08277525.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners
          SPIN 1401G]
 gi|328935273|gb|EGG31753.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners
          SPIN 1401G]
          Length = 583

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 6/77 (7%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
          RPRT E   GQ   C  L+  I+  K     + H  LF GP G GKT+ A++ A+ +   
Sbjct: 11 RPRTFEAVVGQSAICDTLRNSIKRHK-----ISHAFLFSGPRGTGKTSCAKIFAKAINCM 65

Query: 82 FRSTSGPVIAKAGDLAA 98
                P    +  LAA
Sbjct: 66 DSKDGEPCNQCSNCLAA 82


>gi|328858938|gb|EGG08049.1| peroxisome assembly protein Pex1p [Melampsora larici-populina
           98AG31]
          Length = 915

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  G PG GKT LA  VA+E G+NF S  GP
Sbjct: 680 LLLYGYPGCGKTMLASAVAKECGLNFISIKGP 711


>gi|323455708|gb|EGB11576.1| hypothetical protein AURANDRAFT_10538 [Aureococcus anophagefferens]
          Length = 574

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 43/89 (48%), Gaps = 8/89 (8%)

Query: 34  VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK- 92
           VE    LK   +  K  A+    VL  GPPG GKT LA+  A E GV F STSG    + 
Sbjct: 142 VEVVDFLKYPEKFTKVGAKTPRGVLLEGPPGTGKTLLARACAGEAGVPFISTSGSEFVEM 201

Query: 93  -AGDLAALLTNL------EDRDVLFIDEI 114
             G  A+ + NL          ++FIDEI
Sbjct: 202 FVGVGASRIRNLFGDAKKNAPCIIFIDEI 230


>gi|323454913|gb|EGB10782.1| hypothetical protein AURANDRAFT_71065 [Aureococcus anophagefferens]
          Length = 747

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 6/67 (8%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +   RP +L+E     +  S L+  IEA K     L H L  GPPG GKT+     A+++
Sbjct: 428 VEKYRPSSLDELVAHKDIISVLRRLIEADK-----LPHTLLYGPPGTGKTSTILAAAKDM 482

Query: 79  -GVNFRS 84
            G  ++S
Sbjct: 483 YGAGYKS 489


>gi|317505297|ref|ZP_07963226.1| ATP-dependent metalloprotease FtsH [Prevotella salivae DSM 15606]
 gi|315663600|gb|EFV03338.1| ATP-dependent metalloprotease FtsH [Prevotella salivae DSM 15606]
          Length = 683

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 8/65 (12%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VL 109
           L VGPPG GKT LA+ VA E GV F S SG       V   A  +  +    +++   ++
Sbjct: 240 LLVGPPGTGKTLLAKAVAGEAGVPFFSMSGSDFVEMFVGVGASRVRDVFAQAKEKSPCII 299

Query: 110 FIDEI 114
           FIDEI
Sbjct: 300 FIDEI 304


>gi|312873576|ref|ZP_07733623.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners
          LEAF 2052A-d]
 gi|311090829|gb|EFQ49226.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners
          LEAF 2052A-d]
          Length = 587

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 6/77 (7%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
          RPRT E   GQ   C  L+  I+  K     + H  LF GP G GKT+ A++ A+ +   
Sbjct: 15 RPRTFEAVVGQSAICDTLRNSIKRHK-----ISHAFLFSGPRGTGKTSCAKIFAKAINCM 69

Query: 82 FRSTSGPVIAKAGDLAA 98
                P    +  LAA
Sbjct: 70 DSKDGEPCNQCSNCLAA 86


>gi|307822781|ref|ZP_07653012.1| ATP-dependent metalloprotease FtsH [Methylobacter tundripaludum
           SV96]
 gi|307736385|gb|EFO07231.1| ATP-dependent metalloprotease FtsH [Methylobacter tundripaludum
           SV96]
          Length = 640

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 91/218 (41%), Gaps = 28/218 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           +L VGPPG GKT +A+ +A E GV F + SG       V   A  +  +    ++    +
Sbjct: 188 ILMVGPPGTGKTLIARAIAGEAGVKFFTISGSDFVEMFVGVGASRVRDMFAQAKEHAPCI 247

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFT------LIAATTR 162
           +FIDEI  +             D +   +         + + +  F       +IAAT R
Sbjct: 248 IFIDEIDAVGRQRGGPGMGGGNDEREQTL-------NQLLVEMDGFNGNEGVIVIAATNR 300

Query: 163 VGLLTNPL--QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPR 220
             +L   L    RF   + +   ++   + I+    K     V   A  E+   +RGTP 
Sbjct: 301 ADVLDKALLRPGRFDRQVNVGLPDVRGREQILNVHIK----KVPAAADVELKYIARGTPG 356

Query: 221 IAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKM 258
            +G  L  V + A +  A++  +E+ + + L  A DK+
Sbjct: 357 FSGADLANVVNEAALFAARSNKQEV-NMSDLEKAKDKI 393


>gi|296082901|emb|CBI22202.3| unnamed protein product [Vitis vinifera]
          Length = 657

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 250 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSG 280


>gi|257458486|ref|ZP_05623623.1| DNA polymerase III, subunits gamma and tau [Treponema vincentii
           ATCC 35580]
 gi|257444083|gb|EEV19189.1| DNA polymerase III, subunits gamma and tau [Treponema vincentii
           ATCC 35580]
          Length = 416

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 53/113 (46%), Gaps = 17/113 (15%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+  E+  GQ    + L+  IEA K     + H  LF GP G GKT+ A+++A+ L   
Sbjct: 11  RPQRFEDLLGQDFVAATLQKSIEAGK-----IAHAYLFSGPRGCGKTSSARILAKALNCE 65

Query: 82  FRSTSGPVIAKAGDLAAL--LTNLEDRDVLFIDEIHRLSI-----IVEEILYP 127
               +G V    G   +   +T     DV+ ID     S+     I +EIL+P
Sbjct: 66  ----TGTVATPCGVCTSCCEITAGSSIDVIEIDGASNTSVNDVRQIKDEILFP 114


>gi|268680380|ref|YP_003304811.1| ATP-dependent metalloprotease FtsH [Sulfurospirillum deleyianum DSM
           6946]
 gi|268618411|gb|ACZ12776.1| ATP-dependent metalloprotease FtsH [Sulfurospirillum deleyianum DSM
           6946]
          Length = 643

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108
           VL VGPPG GKT LA+ VA E  V F S SG       V   A  +  L  N +     +
Sbjct: 221 VLLVGPPGTGKTLLAKAVAGEASVPFFSVSGSSFIEMFVGVGASRVRDLFENAKKEAPAI 280

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 281 VFIDEI 286


>gi|225452799|ref|XP_002283393.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 676

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 250 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSG 280


>gi|225446693|ref|XP_002282107.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 694

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 268 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 298


>gi|215425127|ref|ZP_03423046.1| hypothetical protein MtubT9_01540 [Mycobacterium tuberculosis T92]
 gi|215432851|ref|ZP_03430770.1| hypothetical protein MtubE_19828 [Mycobacterium tuberculosis
           EAS054]
 gi|219559969|ref|ZP_03539045.1| hypothetical protein MtubT1_22617 [Mycobacterium tuberculosis T17]
 gi|260198923|ref|ZP_05766414.1| hypothetical protein MtubT4_01954 [Mycobacterium tuberculosis T46]
 gi|289441310|ref|ZP_06431054.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289572126|ref|ZP_06452353.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289748401|ref|ZP_06507779.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289756002|ref|ZP_06515380.1| ATPase [Mycobacterium tuberculosis EAS054]
 gi|289414229|gb|EFD11469.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289545881|gb|EFD49528.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289688988|gb|EFD56417.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289696589|gb|EFD64018.1| ATPase [Mycobacterium tuberculosis EAS054]
          Length = 573

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 14/78 (17%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEE------FTGQVEACSNLKVFIEAAKARAEALDHV 57
           RE LL+   ++ D  I L R +   E         +V A   +KV        A+   H+
Sbjct: 279 RERLLAEAQAELDRQIGLTRVKNQIERYRAATLMARVRAAKGMKV--------AQPSKHM 330

Query: 58  LFVGPPGLGKTTLAQVVA 75
           +F GPPG GKTT+A+VVA
Sbjct: 331 IFTGPPGTGKTTIARVVA 348


>gi|210623041|ref|ZP_03293528.1| hypothetical protein CLOHIR_01478 [Clostridium hiranonis DSM 13275]
 gi|210153844|gb|EEA84850.1| hypothetical protein CLOHIR_01478 [Clostridium hiranonis DSM 13275]
          Length = 627

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 20/30 (66%), Positives = 21/30 (70%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           L VGPPG GKT LA+ VA E GV F S SG
Sbjct: 202 LLVGPPGTGKTLLAKAVAGEAGVPFFSISG 231


>gi|153854743|ref|ZP_01995977.1| hypothetical protein DORLON_01975 [Dorea longicatena DSM 13814]
 gi|149752650|gb|EDM62581.1| hypothetical protein DORLON_01975 [Dorea longicatena DSM 13814]
          Length = 510

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F + SG
Sbjct: 99  VLLVGPPGTGKTLLAKAVAGEAGVPFFTISG 129


>gi|147834823|emb|CAN75012.1| hypothetical protein VITISV_034238 [Vitis vinifera]
          Length = 904

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 82/206 (39%), Gaps = 33/206 (16%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQ 72
           + + D+   + R   +  G V+    +  ++   K + +A   VL FVGPPG+GKT+LA 
Sbjct: 377 EHELDLRAAKERLDSDHYGLVKVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLAS 436

Query: 73  VVARELGVNFRSTSGPVIAKAGDL------------AALLTNLE----DRDVLFIDEIHR 116
            +A  LG  F   S   +    D+              L+  L+       V+ +DEI +
Sbjct: 437 SIASALGRKFVRISLGGVKDEADIRGHRRTYIGSMPGRLIEGLKRVGVSNPVMLLDEIDK 496

Query: 117 LSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
               V         E+L P       D  +       +V  +LS+   +A   RV  +  
Sbjct: 497 TGSDVRGDPASALLEVLDPEQNKTFNDHYL-------NVPYDLSKVIFVATANRVQPIPP 549

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQR 194
           PL DR  + I L  Y  E+   I  R
Sbjct: 550 PLLDRMEV-IELPGYTPEEKLKIAMR 574


>gi|147809607|emb|CAN73350.1| hypothetical protein VITISV_000418 [Vitis vinifera]
          Length = 694

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 268 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 298


>gi|118587402|ref|ZP_01544828.1| ATP-dependent Clp protease, ATP-binding subunit [Oenococcus oeni
           ATCC BAA-1163]
 gi|118432226|gb|EAV38966.1| ATP-dependent Clp protease, ATP-binding subunit [Oenococcus oeni
           ATCC BAA-1163]
          Length = 429

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 26/120 (21%)

Query: 25  RTLEEFT-GQVEACSNLKVFIEAAKARA-EALDH----------VLFVGPPGLGKTTLAQ 72
           + L E+  GQ EA   L V +     R  E+L H          +L +GP G GKT LAQ
Sbjct: 80  KHLNEYVIGQEEAKKTLAVAVYNHYKRVNESLQHKSDVELQKSNILLIGPTGSGKTYLAQ 139

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNL--------------EDRDVLFIDEIHRLS 118
            +A+ L V F       + +AG +   + N+                R +++IDEI +++
Sbjct: 140 SLAKMLDVPFAIADATTLTEAGYVGEDVENVVLKLLQAADFDVEKAQRGIIYIDEIDKIA 199


>gi|116309721|emb|CAH66766.1| OSIGBa0115M15.4 [Oryza sativa Indica Group]
          Length = 577

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 29/53 (54%)

Query: 34  VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTS 86
           VE  S L   +   K  A+    VL VGPPG GKT LA+ VA E G+ F S S
Sbjct: 303 VEVVSCLHGSLNYKKLGAKLPRGVLLVGPPGTGKTLLARAVAGEAGIPFFSVS 355


>gi|162606098|ref|XP_001713564.1| CDC48 like protein [Guillardia theta]
 gi|13794484|gb|AAK39859.1|AF165818_67 CDC48 like protein [Guillardia theta]
          Length = 606

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT +A+  A+E G NF    GP I
Sbjct: 385 ILINGPPGCGKTMIAKAAAKESGANFSYIKGPEI 418


>gi|71064675|ref|YP_263402.1| recombination factor protein RarA [Psychrobacter arcticus 273-4]
 gi|71037660|gb|AAZ17968.1| Recombination protein MgsA [Psychrobacter arcticus 273-4]
          Length = 429

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 66/144 (45%), Gaps = 21/144 (14%)

Query: 22  LRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP TL+   GQ   +   + L+  +E        L  ++  G  G+GKTT+A ++A  +
Sbjct: 15  MRPTTLDTIIGQEHLLAVGAPLRRLVEQGH-----LPSIILHGEAGIGKTTIAMLLADAV 69

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLSIIVEEILYPAMED 131
           G  F + S    A    +  L   L+ +D       V+FIDEIHR +   ++ L  A+E 
Sbjct: 70  GRPFHALS----ALNTGVKQLREVLDSKDSLSFESPVVFIDEIHRFNKAQQDALLGAVES 125

Query: 132 FQLDLM--VGEGPSARSVKINLSR 153
             + L+    E PS       LSR
Sbjct: 126 GDITLIGATTENPSFSVNNALLSR 149


>gi|15611004|ref|NP_218385.1| hypothetical protein Rv3868 [Mycobacterium tuberculosis H37Rv]
 gi|15843498|ref|NP_338535.1| AAA family ATPase [Mycobacterium tuberculosis CDC1551]
 gi|148663735|ref|YP_001285258.1| hypothetical protein MRA_3907 [Mycobacterium tuberculosis H37Ra]
 gi|148825076|ref|YP_001289830.1| hypothetical protein TBFG_13903 [Mycobacterium tuberculosis F11]
 gi|167967458|ref|ZP_02549735.1| hypothetical protein MtubH3_05242 [Mycobacterium tuberculosis
           H37Ra]
 gi|215405924|ref|ZP_03418105.1| hypothetical protein Mtub0_19988 [Mycobacterium tuberculosis
           02_1987]
 gi|215413796|ref|ZP_03422464.1| hypothetical protein Mtub9_20610 [Mycobacterium tuberculosis
           94_M4241A]
 gi|218755654|ref|ZP_03534450.1| hypothetical protein MtubG1_20484 [Mycobacterium tuberculosis GM
           1503]
 gi|253800918|ref|YP_003033920.1| hypothetical protein TBMG_03916 [Mycobacterium tuberculosis KZN
           1435]
 gi|254233356|ref|ZP_04926682.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|254366412|ref|ZP_04982456.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254548872|ref|ZP_05139319.1| hypothetical protein Mtube_00135 [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|289556137|ref|ZP_06445347.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
 gi|289747711|ref|ZP_06507089.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289764058|ref|ZP_06523436.1| ATPase [Mycobacterium tuberculosis GM 1503]
 gi|297636553|ref|ZP_06954333.1| hypothetical protein MtubK4_20610 [Mycobacterium tuberculosis KZN
           4207]
 gi|297733548|ref|ZP_06962666.1| hypothetical protein MtubKR_20755 [Mycobacterium tuberculosis KZN
           R506]
 gi|298527341|ref|ZP_07014750.1| ATPase, AAA family [Mycobacterium tuberculosis 94_M4241A]
 gi|306778761|ref|ZP_07417098.1| hypothetical protein TMBG_02408 [Mycobacterium tuberculosis
           SUMu002]
 gi|307086666|ref|ZP_07495779.1| hypothetical protein TMLG_00364 [Mycobacterium tuberculosis
           SUMu012]
 gi|313660879|ref|ZP_07817759.1| hypothetical protein MtubKV_20750 [Mycobacterium tuberculosis KZN
           V2475]
 gi|7388391|sp|O69733|ECCA1_MYCTU RecName: Full=ESX-1 secretion system protein EccA1; AltName:
           Full=ESX conserved component A1; AltName: Full=Type VII
           secretion system protein EccA1; Short=T7SS protein EccA1
 gi|2960220|emb|CAA17960.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv]
 gi|13883872|gb|AAK48349.1| ATPase, AAA family [Mycobacterium tuberculosis CDC1551]
 gi|124603149|gb|EAY61424.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|134151924|gb|EBA43969.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148507887|gb|ABQ75696.1| conserved hypothetical protein [Mycobacterium tuberculosis H37Ra]
 gi|148723603|gb|ABR08228.1| conserved hypothetical protein [Mycobacterium tuberculosis F11]
 gi|253322422|gb|ACT27025.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
           1435]
 gi|289440769|gb|EFD23262.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
 gi|289688239|gb|EFD55727.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289711564|gb|EFD75580.1| ATPase [Mycobacterium tuberculosis GM 1503]
 gi|298497135|gb|EFI32429.1| ATPase, AAA family [Mycobacterium tuberculosis 94_M4241A]
 gi|308328243|gb|EFP17094.1| hypothetical protein TMBG_02408 [Mycobacterium tuberculosis
           SUMu002]
 gi|308363932|gb|EFP52783.1| hypothetical protein TMLG_00364 [Mycobacterium tuberculosis
           SUMu012]
 gi|323717451|gb|EGB26655.1| hypothetical protein TMMG_00363 [Mycobacterium tuberculosis
           CDC1551A]
 gi|326905704|gb|EGE52637.1| hypothetical protein TBPG_03666 [Mycobacterium tuberculosis W-148]
 gi|328460646|gb|AEB06069.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
           4207]
          Length = 573

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 14/78 (17%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEE------FTGQVEACSNLKVFIEAAKARAEALDHV 57
           RE LL+   ++ D  I L R +   E         +V A   +KV        A+   H+
Sbjct: 279 RERLLAEAQAELDRQIGLTRVKNQIERYRAATLMARVRAAKGMKV--------AQPSKHM 330

Query: 58  LFVGPPGLGKTTLAQVVA 75
           +F GPPG GKTT+A+VVA
Sbjct: 331 IFTGPPGTGKTTIARVVA 348


>gi|323304219|gb|EGA57994.1| Pex1p [Saccharomyces cerevisiae FostersB]
          Length = 902

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  G PG GKT LA  VA++ G+NF S  GP I
Sbjct: 734 ILLYGYPGCGKTLLASAVAQQCGLNFISVKGPEI 767


>gi|309810107|ref|ZP_07703953.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners
          SPIN 2503V10-D]
 gi|308169606|gb|EFO71653.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners
          SPIN 2503V10-D]
          Length = 583

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 6/77 (7%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
          RPRT E   GQ   C  L+  I+  K     + H  LF GP G GKT+ A++ A+ +   
Sbjct: 11 RPRTFEAVVGQSAICDTLRNSIKRHK-----ISHAFLFSGPRGTGKTSCAKIFAKAINCM 65

Query: 82 FRSTSGPVIAKAGDLAA 98
                P    +  LAA
Sbjct: 66 DSKDGEPCNQCSNCLAA 82


>gi|260893890|ref|YP_003239987.1| ATP-dependent metalloprotease FtsH [Ammonifex degensii KC4]
 gi|260866031|gb|ACX53137.1| ATP-dependent metalloprotease FtsH [Ammonifex degensii KC4]
          Length = 639

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 46/95 (48%), Gaps = 11/95 (11%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           EE    VE   N + F E     A     VL  GPPG GKT +A+ VA E GV F S SG
Sbjct: 169 EELQEIVEFLKNPRKFSELG---ARIPKGVLLYGPPGTGKTLIARAVAGEAGVPFFSISG 225

Query: 88  PVIAK--AGDLAALLTNLEDRD------VLFIDEI 114
               +   G  AA + +L ++       ++FIDEI
Sbjct: 226 SDFVEMFVGVGAARVRDLFEQAKKNAPCIVFIDEI 260


>gi|240950345|ref|ZP_04754615.1| ATP-dependent protease ATP-binding subunit ClpX [Actinobacillus
           minor NM305]
 gi|240295156|gb|EER45975.1| ATP-dependent protease ATP-binding subunit ClpX [Actinobacillus
           minor NM305]
          Length = 414

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LA+ +AR L V F       + +AG +   + N+            
Sbjct: 117 NILLIGPTGSGKTLLAETLARRLNVPFAVADATTLTQAGYVGEDVENVIQKLLMKCDFDA 176

Query: 104 --EDRDVLFIDEIHRLS 118
              +R ++FIDEI +++
Sbjct: 177 EQAERGIVFIDEIDKIT 193


>gi|240104120|ref|YP_002960429.1| replication factor C large subunit [Thermococcus gammatolerans
          EJ3]
 gi|239911674|gb|ACS34565.1| Replication factor C, large subunit (rfcL) [Thermococcus
          gammatolerans EJ3]
          Length = 507

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAA-KARAEALDHVLFVGPPGLGKTTLAQVVARE 77
          +   RPR L E   Q +A   ++ ++EA           ++  GPPG+GKTT    +A E
Sbjct: 10 VEKYRPRKLSEIVNQEKAIEQVRAWVEAWLHGNPPKKKALILAGPPGVGKTTTVYALANE 69

Query: 78 LG 79
           G
Sbjct: 70 YG 71


>gi|260947222|ref|XP_002617908.1| hypothetical protein CLUG_01367 [Clavispora lusitaniae ATCC 42720]
 gi|238847780|gb|EEQ37244.1| hypothetical protein CLUG_01367 [Clavispora lusitaniae ATCC 42720]
          Length = 809

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 547 VLMWGPPGCGKTLLAKAVANESRANFISVKGP 578



 Score = 39.3 bits (90), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL  GPPG GKTT+A  +A EL V F + S P +
Sbjct: 221 VLLYGPPGCGKTTIANALAGELQVPFINISAPSV 254


>gi|218458415|ref|ZP_03498506.1| cell division protein ftsH (ATP-dependent zinc-metallo protease)
           [Rhizobium etli Kim 5]
          Length = 192

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           VL VGPPG GKT LA+ VA E GV + S SG    +   G  AA + +L ++       +
Sbjct: 70  VLLVGPPGTGKTLLAKAVAGEAGVPYFSISGSEFVEMFVGVGAARVRDLFEQARAKAPAI 129

Query: 109 LFIDEIHRLS 118
           +FIDE+  L 
Sbjct: 130 IFIDELDALG 139


>gi|182679146|ref|YP_001833292.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Beijerinckia
           indica subsp. indica ATCC 9039]
 gi|238691227|sp|B2IGP2|CLPX_BEII9 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|182635029|gb|ACB95803.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Beijerinckia
           indica subsp. indica ATCC 9039]
          Length = 421

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+         
Sbjct: 110 AKSNILLIGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASD 169

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDEI ++S
Sbjct: 170 YNVERAQRGIVYIDEIDKIS 189


>gi|170745082|ref|YP_001766539.1| AAA family ATPase, CDC48 subfamily protein [Methylobacterium
           radiotolerans JCM 2831]
 gi|170658683|gb|ACB27737.1| AAA family ATPase, CDC48 subfamily [Methylobacterium radiotolerans
           JCM 2831]
          Length = 755

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 52/109 (47%), Gaps = 16/109 (14%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDHV--------LFVGPPGLGKTTLAQVVARE 77
           T ++  G  EA   L+  +E      +A   +        L  GPPG GKT LA+ VARE
Sbjct: 476 TWDDVGGLAEAQMRLREGVELPLRSPQAFRRIGIRPAKGFLLFGPPGTGKTLLAKAVARE 535

Query: 78  LGVNFRST-SGPVIAK-AGDLAALLTNLEDR------DVLFIDEIHRLS 118
              NF +T S  +++K  G+    ++ L  R       V+FIDEI  L+
Sbjct: 536 SDANFVATKSSDLLSKWYGESEQQVSRLFQRARQVAPTVIFIDEIDSLA 584



 Score = 37.4 bits (85), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 8/76 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLAALLTNLEDR------DV 108
           VL  GPPG GKT LA+ VA E    F   +GP I  ++ G+    L  +          +
Sbjct: 243 VLLHGPPGTGKTRLARAVANETEARFFHIAGPEIMGSRYGESEQRLREVFQEAAQSAPSI 302

Query: 109 LFIDEIHRLSIIVEEI 124
           +FIDEI  ++   E++
Sbjct: 303 IFIDEIDSIAPKREQV 318


>gi|152990824|ref|YP_001356546.1| ATP-dependent zinc metalloproteinase [Nitratiruptor sp. SB155-2]
 gi|151422685|dbj|BAF70189.1| ATP-dependent zinc metalloproteinase [Nitratiruptor sp. SB155-2]
          Length = 552

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDR--DV 108
           VL VGPPG+GKT +A+ VA E GV F   SG    +      A  +  L    ++    +
Sbjct: 190 VLLVGPPGVGKTLIAKAVAGEAGVPFFYQSGSAFVQIYVGMGAKRVRELFKKAKEMAPSI 249

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 250 VFIDEI 255


>gi|147852346|emb|CAN80115.1| hypothetical protein VITISV_032527 [Vitis vinifera]
          Length = 676

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 250 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSG 280


>gi|126458632|ref|YP_001054910.1| replication factor C large subunit [Pyrobaculum calidifontis JCM
          11548]
 gi|158513487|sp|A3MS27|RFCL_PYRCJ RecName: Full=Replication factor C large subunit; Short=RFC large
          subunit; AltName: Full=Clamp loader large subunit
 gi|126248353|gb|ABO07444.1| transcriptional regulator, Fis family [Pyrobaculum calidifontis
          JCM 11548]
          Length = 421

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 15/72 (20%)

Query: 23 RPRTLEEFTGQVEA--------CSNLKVFIEAAKARAEALDH-------VLFVGPPGLGK 67
          RP++  E   Q EA        C+  K   E     A+  D        VL  GPPG+GK
Sbjct: 10 RPKSFSEIVNQEEAKQILASWICTRFKAPQEFCARWAKRRDKEIKEARAVLLWGPPGIGK 69

Query: 68 TTLAQVVARELG 79
          TTL   +A+E+G
Sbjct: 70 TTLVHALAKEIG 81


>gi|119599729|gb|EAW79323.1| RuvB-like 1 (E. coli) [Homo sapiens]
          Length = 404

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 31/62 (50%)

Query: 18 DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
          D S L  +      GQ  A     V +E  K++  A   VL  GPPG GKT LA  +A+E
Sbjct: 27 DESGLAKQAASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQE 86

Query: 78 LG 79
          LG
Sbjct: 87 LG 88


>gi|323333485|gb|EGA74879.1| Msp1p [Saccharomyces cerevisiae AWRI796]
          Length = 361

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 34/71 (47%), Gaps = 8/71 (11%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--------AKAGDLAALLTNL 103
           +A   VL  GPPG GKT LA+ +A+E G NF S     I         K  D    L N 
Sbjct: 124 QAPSGVLLYGPPGCGKTMLAKALAKESGANFISIRMSSIMDKWYGESNKIVDAMFSLANK 183

Query: 104 EDRDVLFIDEI 114
               ++FIDEI
Sbjct: 184 LQPCIIFIDEI 194


>gi|322515315|ref|ZP_08068312.1| ATP-dependent Clp protease ATP-binding subunit [Actinobacillus
           ureae ATCC 25976]
 gi|322118691|gb|EFX90903.1| ATP-dependent Clp protease ATP-binding subunit [Actinobacillus
           ureae ATCC 25976]
          Length = 419

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LA+ +AR L V F       + +AG +   + N+            
Sbjct: 118 NILLIGPTGSGKTLLAETLARRLNVPFAVADATTLTQAGYVGEDVENVIQKLLMKCDFDA 177

Query: 104 --EDRDVLFIDEIHRLS 118
              +R ++FIDEI +++
Sbjct: 178 EQAERGIVFIDEIDKIT 194


>gi|319399668|gb|EFV87922.1| putative ATP-dependent metallopeptidase HflB [Staphylococcus
           epidermidis FRI909]
          Length = 700

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E G  F S SG       V   A  +  L  N +     +
Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 260

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 261 IFIDEI 266


>gi|307293096|ref|ZP_07572942.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sphingobium
           chlorophenolicum L-1]
 gi|306881162|gb|EFN12378.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sphingobium
           chlorophenolicum L-1]
          Length = 422

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L VGP G GKT LAQ +A+   V F       + +AG +   + N+         
Sbjct: 111 AKSNILLVGPTGCGKTLLAQTLAKTFDVPFTMADATTLTEAGYVGEDVENIILKLLQASD 170

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDEI ++S
Sbjct: 171 YNVEKAQRGIVYIDEIDKIS 190


>gi|289551690|ref|YP_003472594.1| Cell division protein FtsH [Staphylococcus lugdunensis HKU09-01]
 gi|315660321|ref|ZP_07913174.1| ATP-dependent metalloprotease FtsH [Staphylococcus lugdunensis
           M23590]
 gi|289181221|gb|ADC88466.1| Cell division protein FtsH [Staphylococcus lugdunensis HKU09-01]
 gi|315494610|gb|EFU82952.1| ATP-dependent metalloprotease FtsH [Staphylococcus lugdunensis
           M23590]
          Length = 695

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E G  F S SG       V   A  +  L  N +     +
Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 260

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 261 IFIDEI 266


>gi|260184797|ref|ZP_05762271.1| hypothetical protein MtubCP_01892 [Mycobacterium tuberculosis
           CPHL_A]
 gi|289445470|ref|ZP_06435214.1| ATPase [Mycobacterium tuberculosis CPHL_A]
 gi|289418428|gb|EFD15629.1| ATPase [Mycobacterium tuberculosis CPHL_A]
          Length = 573

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 14/78 (17%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEE------FTGQVEACSNLKVFIEAAKARAEALDHV 57
           RE LL+   ++ D  I L R +   E         +V A   +KV        A+   H+
Sbjct: 279 RERLLAEAQAELDRQIGLTRVKNQIERYRAATLMARVRAAKGMKV--------AQPSKHM 330

Query: 58  LFVGPPGLGKTTLAQVVA 75
           +F GPPG GKTT+A+VVA
Sbjct: 331 IFTGPPGTGKTTIARVVA 348


>gi|257068143|ref|YP_003154398.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Brachybacterium faecium DSM 4810]
 gi|256558961|gb|ACU84808.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Brachybacterium faecium DSM 4810]
          Length = 444

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 15/97 (15%)

Query: 36  ACSNLKVFIEAAKARAE-ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG 94
           A ++L   +++   R E A  +V+ VGP G GKT LAQ +AR L V F       + +AG
Sbjct: 113 AAASLAEEVDSEDDRIEVAKSNVMLVGPTGCGKTYLAQTLARMLDVPFTMADATALTEAG 172

Query: 95  ----DLAALLTNL---EDRDV-------LFIDEIHRL 117
               D+  +L  L    D DV       ++IDEI ++
Sbjct: 173 YVGEDVENILLKLLQAADYDVKKAEHGIIYIDEIDKI 209


>gi|225021670|ref|ZP_03710862.1| hypothetical protein CORMATOL_01698 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305681341|ref|ZP_07404148.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Corynebacterium matruchotii ATCC 14266]
 gi|224945661|gb|EEG26870.1| hypothetical protein CORMATOL_01698 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305659546|gb|EFM49046.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Corynebacterium matruchotii ATCC 14266]
          Length = 427

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 60/152 (39%), Gaps = 38/152 (25%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEALD---- 55
           E L   +  QED    L RP  +  F      GQ EA   L V +     R  A D    
Sbjct: 48  EELAKSSKPQEDQTTGLPRPSEIAAFLDKYVVGQDEAKRILAVAVYNHYKRVRAEDARTL 107

Query: 56  ---------------HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DL 96
                          ++L +GP G GKT LAQ +AR L V F       + +AG    D+
Sbjct: 108 GGRKYRDDDTELQKSNILMLGPTGSGKTYLAQTLARLLDVPFAIADATSLTEAGYVGEDV 167

Query: 97  AALLTNL----------EDRDVLFIDEIHRLS 118
             +L  L            R ++++DE+ ++S
Sbjct: 168 ENILLKLLQAADFDVQRAQRGIIYVDEVDKIS 199


>gi|223044433|ref|ZP_03614466.1| putative ATP-dependent metallopeptidase HflB subfamily
           [Staphylococcus capitis SK14]
 gi|222442222|gb|EEE48334.1| putative ATP-dependent metallopeptidase HflB subfamily
           [Staphylococcus capitis SK14]
          Length = 711

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E G  F S SG       V   A  +  L  N +     +
Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 260

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 261 IFIDEI 266


>gi|220908960|ref|YP_002484271.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7425]
 gi|219865571|gb|ACL45910.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7425]
          Length = 631

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL +GPPG GKT LA+ +A E GV F S SG       V   A  +  L    +D    +
Sbjct: 202 VLLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKDNAPCL 261

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 262 VFIDEI 267


>gi|254410318|ref|ZP_05024097.1| ATP-dependent metallopeptidase HflB subfamily [Microcoleus
           chthonoplastes PCC 7420]
 gi|196182524|gb|EDX77509.1| ATP-dependent metallopeptidase HflB subfamily [Microcoleus
           chthonoplastes PCC 7420]
          Length = 627

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 208 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 238


>gi|195976596|dbj|BAG68527.1| katanin p60 [Vigna angularis]
          Length = 259

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLED------RDV 108
           VL  GPPG GKT LA+ VA E G  F + S   +A    G+   ++  L D         
Sbjct: 47  VLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPST 106

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 107 IFIDEIDSL 115


>gi|167565768|ref|ZP_02358684.1| ATP-dependent metalloprotease, FtsH family protein [Burkholderia
           oklahomensis EO147]
          Length = 663

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL VG PG GKT LA+ VA E GV F STSG    +   G  AA + +L ++       +
Sbjct: 206 VLIVGAPGTGKTLLAKAVAGEAGVPFFSTSGSSFVEMFVGVGAARVRDLFEQAQQKAPCI 265

Query: 109 LFIDEI 114
           +FIDE+
Sbjct: 266 IFIDEL 271


>gi|165976698|ref|YP_001652291.1| ATP-dependent protease ATP-binding subunit ClpX [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|165876799|gb|ABY69847.1| ATP-dependent Clp protease, ATP-binding subunit [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
          Length = 378

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LA+ +AR L V F       + +AG +   + N+            
Sbjct: 77  NILLIGPTGSGKTLLAETLARRLNVPFAVADATTLTQAGYVGEDVENVIQKLLMKCDFDA 136

Query: 104 --EDRDVLFIDEIHRLS 118
              +R ++FIDEI +++
Sbjct: 137 EQAERGIVFIDEIDKIT 153


>gi|146341126|ref|YP_001206174.1| ATP-dependent protease ATP-binding subunit ClpX [Bradyrhizobium sp.
           ORS278]
 gi|166214759|sp|A4YVM3|CLPX_BRASO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|146193932|emb|CAL77949.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bradyrhizobium
           sp. ORS278]
          Length = 424

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+         
Sbjct: 110 AKSNILLIGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 169

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDEI ++S
Sbjct: 170 YNVERAQRGIVYIDEIDKIS 189


>gi|134094957|ref|YP_001100032.1| ATP-dependent protease ATP-binding subunit ClpX [Herminiimonas
           arsenicoxydans]
 gi|166214778|sp|A4G5X0|CLPX_HERAR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|133738860|emb|CAL61907.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Herminiimonas
           arsenicoxydans]
          Length = 422

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE 104
           A  ++L VGP G GKT LAQ +AR L V F       + +AG +          LL N  
Sbjct: 112 AKSNILLVGPTGSGKTLLAQTLARTLDVPFVIADATTLTEAGYVGEDVENIIQKLLQNCN 171

Query: 105 ------DRDVLFIDEIHRLS 118
                  + +++IDEI ++S
Sbjct: 172 YEVERAQKGIVYIDEIDKIS 191


>gi|159040235|ref|YP_001539488.1| ATP-dependent metalloprotease FtsH [Salinispora arenicola CNS-205]
 gi|157919070|gb|ABW00498.1| ATP-dependent metalloprotease FtsH [Salinispora arenicola CNS-205]
          Length = 669

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 33/59 (55%), Gaps = 6/59 (10%)

Query: 34  VEACSNLKVFIEAAKARAEAL-----DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VE    +K F++   A+ +AL       VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 181 VEELHEIKDFLQN-PAKYQALGAKIPKGVLLFGPPGTGKTLLARAVAGEAGVPFYSISG 238


>gi|113954954|ref|YP_730623.1| metalloprotease ATP-dependent, FtsH family protein [Synechococcus
           sp. CC9311]
 gi|113882305|gb|ABI47263.1| metalloprotease, ATP-dependent, FtsH family protein [Synechococcus
           sp. CC9311]
          Length = 643

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 223 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSG 253


>gi|92117751|ref|YP_577480.1| ATP-dependent protease ATP-binding subunit ClpX [Nitrobacter
           hamburgensis X14]
 gi|122417675|sp|Q1QL77|CLPX_NITHX RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|91800645|gb|ABE63020.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Nitrobacter
           hamburgensis X14]
          Length = 424

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+         
Sbjct: 110 AKSNILLIGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSAD 169

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDEI ++S
Sbjct: 170 YNVERAQRGIVYIDEIDKIS 189


>gi|75676089|ref|YP_318510.1| ATP-dependent protease ATP-binding subunit [Nitrobacter
           winogradskyi Nb-255]
 gi|123773227|sp|Q3SRD3|CLPX_NITWN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|74420959|gb|ABA05158.1| ClpX, ATPase regulatory subunit [Nitrobacter winogradskyi Nb-255]
          Length = 424

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+         
Sbjct: 110 AKSNILLIGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSAD 169

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDEI ++S
Sbjct: 170 YNVERAQRGIVYIDEIDKIS 189


>gi|27469190|ref|NP_765827.1| cell-division protein [Staphylococcus epidermidis ATCC 12228]
 gi|57866073|ref|YP_187746.1| cell division protein FtsH [Staphylococcus epidermidis RP62A]
 gi|242241596|ref|ZP_04796041.1| cell division protein FtsH [Staphylococcus epidermidis W23144]
 gi|251809818|ref|ZP_04824291.1| cell division protein FtsH [Staphylococcus epidermidis BCM-HMP0060]
 gi|282875442|ref|ZP_06284314.1| ATP-dependent metallopeptidase HflB [Staphylococcus epidermidis
           SK135]
 gi|293366153|ref|ZP_06612840.1| ATP-dependent metalloprotease FtsH [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|27316739|gb|AAO05914.1|AE016751_209 cell-division protein [Staphylococcus epidermidis ATCC 12228]
 gi|57636731|gb|AAW53519.1| cell division protein FtsH, putative [Staphylococcus epidermidis
           RP62A]
 gi|242234977|gb|EES37288.1| cell division protein FtsH [Staphylococcus epidermidis W23144]
 gi|251806686|gb|EES59343.1| cell division protein FtsH [Staphylococcus epidermidis BCM-HMP0060]
 gi|281295799|gb|EFA88321.1| ATP-dependent metallopeptidase HflB [Staphylococcus epidermidis
           SK135]
 gi|291319747|gb|EFE60106.1| ATP-dependent metalloprotease FtsH [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329723965|gb|EGG60490.1| ATP-dependent metallopeptidase HflB [Staphylococcus epidermidis
           VCU144]
 gi|329733033|gb|EGG69372.1| ATP-dependent metallopeptidase HflB [Staphylococcus epidermidis
           VCU028]
 gi|329737911|gb|EGG74139.1| ATP-dependent metallopeptidase HflB [Staphylococcus epidermidis
           VCU045]
          Length = 700

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E G  F S SG       V   A  +  L  N +     +
Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 260

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 261 IFIDEI 266


>gi|28201889|sp|Q9DE26|RUVB1_XENLA RecName: Full=RuvB-like 1; AltName: Full=Pontin
 gi|12004636|gb|AAG44127.1|AF218072_1 pontin [Xenopus laevis]
          Length = 456

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 22/45 (48%), Positives = 27/45 (60%), Gaps = 3/45 (6%)

Query: 35 EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
          EAC    V +E  K++  A   VL  GPPG GKT LA  +A+ELG
Sbjct: 47 EACG---VIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88


>gi|159903386|ref|YP_001550730.1| FtsH ATP-dependent protease-like protein [Prochlorococcus marinus
           str. MIT 9211]
 gi|159888562|gb|ABX08776.1| FtsH ATP-dependent protease-like protein [Prochlorococcus marinus
           str. MIT 9211]
          Length = 637

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 217 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSG 247


>gi|148255922|ref|YP_001240507.1| ATP-dependent protease ATP-binding subunit ClpX [Bradyrhizobium sp.
           BTAi1]
 gi|166214758|sp|A5EKA7|CLPX_BRASB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|146408095|gb|ABQ36601.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Bradyrhizobium
           sp. BTAi1]
          Length = 424

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+         
Sbjct: 110 AKSNILLIGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 169

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDEI ++S
Sbjct: 170 YNVERAQRGIVYIDEIDKIS 189


>gi|314932733|ref|ZP_07840103.1| ATP-dependent metalloprotease FtsH [Staphylococcus caprae C87]
 gi|313654563|gb|EFS18315.1| ATP-dependent metalloprotease FtsH [Staphylococcus caprae C87]
          Length = 711

 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E G  F S SG       V   A  +  L  N +     +
Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 260

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 261 IFIDEI 266


>gi|307243201|ref|ZP_07525374.1| ATP-dependent metallopeptidase HflB [Peptostreptococcus stomatis
           DSM 17678]
 gi|306493462|gb|EFM65442.1| ATP-dependent metallopeptidase HflB [Peptostreptococcus stomatis
           DSM 17678]
          Length = 680

 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL------EDRDV 108
           +L VGPPG GKT L++ VA E GV F S SG    +   G  A+ + +L      E   +
Sbjct: 200 ILMVGPPGTGKTYLSKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKESPAI 259

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 260 VFIDEI 265


>gi|303389385|ref|XP_003072925.1| transitional endoplasmic reticulum ATPase [Encephalitozoon
           intestinalis ATCC 50506]
 gi|303302068|gb|ADM11565.1| transitional endoplasmic reticulum ATPase [Encephalitozoon
           intestinalis ATCC 50506]
          Length = 506

 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 35/70 (50%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDRD------V 108
           +L  GPPG GKT L + V+     NF S  GP +I+K  GD    +  L D+       V
Sbjct: 299 ILLYGPPGCGKTLLVRAVSNMSHCNFLSIKGPELISKYVGDSEKEIRKLFDKAKQLQPCV 358

Query: 109 LFIDEIHRLS 118
           LF DEI  L 
Sbjct: 359 LFFDEIDSLC 368


>gi|302386738|ref|YP_003822560.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           saccharolyticum WM1]
 gi|302197366|gb|ADL04937.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           saccharolyticum WM1]
          Length = 433

 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 28/130 (21%)

Query: 17  ADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARA---EALD------HVLFVGP 62
            DI+L++P+ ++ F      GQ  A   L V +     R    + +D      ++L +GP
Sbjct: 60  GDINLMKPKEIKAFLDDYVIGQDNAKKVLSVAVYNHYKRITSRKKMDVDVQKSNILMLGP 119

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---EDRD-------V 108
            G GKT LAQ +A+ L V F       + +AG    D+  +L  L    D D       +
Sbjct: 120 TGSGKTYLAQTLAKVLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDISRAEYGI 179

Query: 109 LFIDEIHRLS 118
           ++IDEI +++
Sbjct: 180 IYIDEIDKIT 189


>gi|196005443|ref|XP_002112588.1| hypothetical protein TRIADDRAFT_25144 [Trichoplax adhaerens]
 gi|190584629|gb|EDV24698.1| hypothetical protein TRIADDRAFT_25144 [Trichoplax adhaerens]
          Length = 496

 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRS-TSGPVIAKA-GDLAAL------LTNLEDRDV 108
           VL VGPPG GKT LA+ VA E G  F + TS  + +K  GD   L      +        
Sbjct: 251 VLMVGPPGTGKTLLAKAVATECGTTFFNVTSSTLTSKYRGDSEKLVRLLFEMARFYAPST 310

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 311 IFIDEI 316


>gi|270003418|gb|EEZ99865.1| hypothetical protein TcasGA2_TC002647 [Tribolium castaneum]
          Length = 668

 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 17/32 (53%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT +A+ VA E G+ F S  GP
Sbjct: 426 ILLYGPPGTGKTLIAKAVATECGLCFLSVKGP 457


>gi|126324700|ref|XP_001375103.1| PREDICTED: similar to Replication factor C subunit 5 (Replication
          factor C 36 kDa subunit) (RF-C 36 kDa subunit) (RFC36)
          (Activator 1 36 kDa subunit) (A1 36 kDa subunit)
          [Monodelphis domestica]
          Length = 342

 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+TL+E     +  S ++ FI   +     L H+L  GPPG GKT+     AR+L
Sbjct: 29 RPQTLDELISHQDILSTIQKFISEDR-----LPHLLLYGPPGTGKTSTILACARQL 79


>gi|157671927|ref|NP_660208.2| spermatogenesis-associated protein 5 [Homo sapiens]
 gi|308153554|sp|Q8NB90|SPAT5_HUMAN RecName: Full=Spermatogenesis-associated protein 5; AltName:
           Full=ATPase family protein 2 homolog; AltName:
           Full=Spermatogenesis-associated factor protein
 gi|119625621|gb|EAX05216.1| spermatogenesis associated 5, isoform CRA_d [Homo sapiens]
          Length = 893

 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALL------TNLEDRDV 108
           VL  GPPG GKT +A+ VA E+G      +GP +I+K  G+  A L        L    +
Sbjct: 390 VLLYGPPGTGKTMIARAVANEVGAYVSVINGPEIISKFYGETEAKLRQIFAEATLRHPSI 449

Query: 109 LFIDEIHRLS 118
           +FIDE+  L 
Sbjct: 450 IFIDELDALC 459



 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 16/32 (50%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG  KT +A+ +A E G+NF +  GP
Sbjct: 664 VLLYGPPGCSKTMIAKALANESGLNFLAIKGP 695


>gi|117644704|emb|CAL37817.1| hypothetical protein [synthetic construct]
          Length = 893

 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALL------TNLEDRDV 108
           VL  GPPG GKT +A+ VA E+G      +GP +I+K  G+  A L        L    +
Sbjct: 390 VLLYGPPGTGKTMIARAVANEVGAYVSVINGPEIISKFYGETEAKLRQIFAEATLRHPSI 449

Query: 109 LFIDEIHRLS 118
           +FIDE+  L 
Sbjct: 450 IFIDELDALC 459



 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 16/32 (50%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG  KT +A+ +A E G+NF +  GP
Sbjct: 664 VLLYGPPGCSKTMIAKALANESGLNFLAIKGP 695


>gi|308807567|ref|XP_003081094.1| replication factor C 37 kDa subunit (ISS) [Ostreococcus tauri]
 gi|116059556|emb|CAL55263.1| replication factor C 37 kDa subunit (ISS) [Ostreococcus tauri]
          Length = 342

 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 5/60 (8%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          +   RP+T+ +   Q +    L+  +E        + H LF GPPG GKTT A  +A++L
Sbjct: 19 VEKYRPKTVRDVASQEQVVRVLEQALETGN-----MPHCLFYGPPGTGKTTCALAIAKQL 73


>gi|126700923|ref|YP_001089820.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium
           difficile 630]
 gi|254976903|ref|ZP_05273375.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium
           difficile QCD-66c26]
 gi|255094289|ref|ZP_05323767.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium
           difficile CIP 107932]
 gi|255102471|ref|ZP_05331448.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium
           difficile QCD-63q42]
 gi|255308376|ref|ZP_05352547.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium
           difficile ATCC 43255]
 gi|255316043|ref|ZP_05357626.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium
           difficile QCD-76w55]
 gi|255518700|ref|ZP_05386376.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium
           difficile QCD-97b34]
 gi|255651822|ref|ZP_05398724.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium
           difficile QCD-37x79]
 gi|255657262|ref|ZP_05402671.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium
           difficile QCD-23m63]
 gi|260684848|ref|YP_003216133.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium
           difficile CD196]
 gi|260688506|ref|YP_003219640.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium
           difficile R20291]
 gi|296451897|ref|ZP_06893614.1| ATP-dependent Clp protease ATP-binding subunit [Clostridium
           difficile NAP08]
 gi|296879708|ref|ZP_06903683.1| ATP-dependent Clp protease ATP-binding subunit [Clostridium
           difficile NAP07]
 gi|306521609|ref|ZP_07407956.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium
           difficile QCD-32g58]
 gi|123066426|sp|Q180E8|CLPX_CLOD6 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|115252360|emb|CAJ70201.1| ATP-dependent Clp protease ATP-binding subunit clpX [Clostridium
           difficile]
 gi|260211011|emb|CBA66322.1| ATP-dependent Clp protease ATP-binding subunit [Clostridium
           difficile CD196]
 gi|260214523|emb|CBE07037.1| ATP-dependent Clp protease ATP-binding subunit [Clostridium
           difficile R20291]
 gi|296259279|gb|EFH06157.1| ATP-dependent Clp protease ATP-binding subunit [Clostridium
           difficile NAP08]
 gi|296429297|gb|EFH15169.1| ATP-dependent Clp protease ATP-binding subunit [Clostridium
           difficile NAP07]
          Length = 416

 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +AR L V F       + +AG    D+  +L  L        
Sbjct: 111 NILLLGPTGSGKTLLAQTLARTLNVPFAMADATSLTEAGYVGEDVENILLKLIQAADFDI 170

Query: 104 --EDRDVLFIDEIHRLS 118
              +R +++IDEI +++
Sbjct: 171 EKAERGIIYIDEIDKIA 187


>gi|78776658|ref|YP_392973.1| AAA ATPase [Sulfurimonas denitrificans DSM 1251]
 gi|78497198|gb|ABB43738.1| AAA ATPase [Sulfurimonas denitrificans DSM 1251]
          Length = 725

 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 96/229 (41%), Gaps = 42/229 (18%)

Query: 6   GLLSRNVSQEDADISL--LRPRTLEEFTGQVEACSNLKVFIEAAKA----RAEALDHVLF 59
           G+ ++ VS+ D  +SL  L+    +   GQ +A   +   I+ +KA      + +   LF
Sbjct: 416 GISNQKVSK-DETLSLINLQESLKQRVIGQDKAVEEVTKAIKISKAGLTPEGKPIASFLF 474

Query: 60  VGPPGLGKTTLAQVVARELGVNFR------------------STSGPVIAKAGDLAALLT 101
            GP G+GKT LA  ++  LGVNF                   +  G V  + G L     
Sbjct: 475 SGPTGVGKTELALSLSEILGVNFERFDMSEYMEKHALSRLIGAPPGYVGYEQGGLLTEAI 534

Query: 102 NLEDRDVLFIDEIHRLSIIVEEILYPAME------------DFQ---LDLMVGEGPSARS 146
                 VL +DEI +    +  IL   M+            +FQ   L +    G +ARS
Sbjct: 535 KKHPYSVLLLDEIEKAHPDLVNILLQIMDNATLTDNNGYKANFQNVILIMTSNVGATARS 594

Query: 147 VKINLSRFTLIAATTRVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQR 194
           V +  ++ + +A    + L   P  ++R    +  N  +IE +K IV++
Sbjct: 595 V-MGFNKDSSLAKNEELKLFFTPEFRNRLSAIVEFNQLDIEIVKNIVKK 642


>gi|124808388|ref|XP_001348299.1| AAA family ATPase, putative [Plasmodium falciparum 3D7]
 gi|23497191|gb|AAN36738.1| AAA family ATPase, putative [Plasmodium falciparum 3D7]
          Length = 1219

 Score = 40.8 bits (94), Expect = 0.33,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 8/80 (10%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLED 105
           K   E+   +L  GPPG  KT  A+ +A E+ +NF S  GP I     G+    + N+  
Sbjct: 863 KYNIESPKGILLYGPPGCSKTLFAKAIASEIHMNFISVKGPEIFSKYVGESEKSIRNIFK 922

Query: 106 RD------VLFIDEIHRLSI 119
           +       V+F DEI  +++
Sbjct: 923 KARENHPCVIFFDEIDSIAV 942


>gi|30584409|gb|AAP36457.1| Homo sapiens RuvB-like 1 (E. coli) [synthetic construct]
 gi|60652563|gb|AAX28976.1| RuvB-like 1 [synthetic construct]
          Length = 457

 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 31/62 (50%)

Query: 18 DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
          D S L  +      GQ  A     V +E  K++  A   VL  GPPG GKT LA  +A+E
Sbjct: 27 DESGLAKQAASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQE 86

Query: 78 LG 79
          LG
Sbjct: 87 LG 88


>gi|9790083|ref|NP_062659.1| ruvB-like 1 [Mus musculus]
 gi|22208848|ref|NP_671706.1| ruvB-like 1 [Rattus norvegicus]
 gi|38605681|sp|P60123|RUVB1_RAT RecName: Full=RuvB-like 1; AltName: Full=49 kDa TATA box-binding
          protein-interacting protein; Short=49 kDa
          TBP-interacting protein; AltName: Full=DNA helicase
          p50; AltName: Full=Pontin 52; AltName: Full=TIP49a
 gi|38605687|sp|P60122|RUVB1_MOUSE RecName: Full=RuvB-like 1; AltName: Full=49 kDa TATA box-binding
          protein-interacting protein; Short=49 kDa
          TBP-interacting protein; AltName: Full=DNA helicase
          p50; AltName: Full=Pontin 52; AltName: Full=TIP49a
 gi|2225877|dbj|BAA20875.1| TIP49 [Rattus norvegicus]
 gi|4106528|gb|AAD02877.1| Pontin52 [Mus musculus]
 gi|4521276|dbj|BAA76313.1| DNA helicase p50 [Rattus norvegicus]
 gi|13435708|gb|AAH04718.1| RuvB-like protein 1 [Mus musculus]
 gi|48734829|gb|AAH72511.1| RuvB-like 1 (E. coli) [Rattus norvegicus]
 gi|55824715|gb|AAH86531.1| RuvB-like 1 (E. coli) [Rattus norvegicus]
 gi|74210174|dbj|BAE21358.1| unnamed protein product [Mus musculus]
 gi|74217681|dbj|BAE33576.1| unnamed protein product [Mus musculus]
 gi|148666833|gb|EDK99249.1| mCG130614 [Mus musculus]
 gi|149036694|gb|EDL91312.1| rCG56325 [Rattus norvegicus]
          Length = 456

 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 31/62 (50%)

Query: 18 DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
          D S L  +      GQ  A     V +E  K++  A   VL  GPPG GKT LA  +A+E
Sbjct: 27 DESGLAKQAASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQE 86

Query: 78 LG 79
          LG
Sbjct: 87 LG 88


>gi|90423894|ref|YP_532264.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodopseudomonas
           palustris BisB18]
 gi|115524518|ref|YP_781429.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodopseudomonas
           palustris BisA53]
 gi|122296221|sp|Q07NN5|CLPX_RHOP5 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|122476340|sp|Q215J1|CLPX_RHOPB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|90105908|gb|ABD87945.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Rhodopseudomonas palustris BisB18]
 gi|115518465|gb|ABJ06449.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Rhodopseudomonas palustris BisA53]
          Length = 424

 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+         
Sbjct: 110 AKSNILLIGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSAD 169

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDEI ++S
Sbjct: 170 YNVERAQRGIVYIDEIDKIS 189


>gi|134115096|ref|XP_773846.1| hypothetical protein CNBH2980 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50256474|gb|EAL19199.1| hypothetical protein CNBH2980 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 1210

 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 4/48 (8%)

Query: 41  KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           ++F E  K R+     +L  GPPG GKT LA+ VA    +NF S  GP
Sbjct: 891 EMFGEGLKKRS----GILLYGPPGTGKTLLAKAVATSFSLNFFSVKGP 934


>gi|332817809|ref|XP_003310033.1| PREDICTED: ruvB-like 1 isoform 2 [Pan troglodytes]
          Length = 386

 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 31/62 (50%)

Query: 18 DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
          D S L  +      GQ  A     V +E  K++  A   VL  GPPG GKT LA  +A+E
Sbjct: 27 DESGLAKQAASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQE 86

Query: 78 LG 79
          LG
Sbjct: 87 LG 88


>gi|328771029|gb|EGF81070.1| hypothetical protein BATDEDRAFT_35044 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 1124

 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 17/32 (53%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT +A+ VA  L +NF S  GP
Sbjct: 838 ILLYGPPGTGKTLVAKAVATTLSLNFFSVKGP 869


>gi|323354219|gb|EGA86063.1| Pex1p [Saccharomyces cerevisiae VL3]
          Length = 902

 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  G PG GKT LA  VA++ G+NF S  GP I
Sbjct: 734 ILLYGYPGCGKTLLASAVAQQCGLNFISVKGPEI 767


>gi|323304947|gb|EGA58704.1| Msp1p [Saccharomyces cerevisiae FostersB]
          Length = 361

 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 34/71 (47%), Gaps = 8/71 (11%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--------AKAGDLAALLTNL 103
           +A   VL  GPPG GKT LA+ +A+E G NF S     I         K  D    L N 
Sbjct: 124 QAPSGVLLYGPPGCGKTMLAKALAKESGANFISIRMSSIMDKWYGESNKIVDAMFSLANK 183

Query: 104 EDRDVLFIDEI 114
               ++FIDEI
Sbjct: 184 LQPCIIFIDEI 194


>gi|298243866|ref|ZP_06967673.1| ATP-dependent protease La [Ktedonobacter racemifer DSM 44963]
 gi|297556920|gb|EFH90784.1| ATP-dependent protease La [Ktedonobacter racemifer DSM 44963]
          Length = 869

 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 72/167 (43%), Gaps = 41/167 (24%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           + FVGPPG+GKT+L   +AR LG  F R + G +  +A              G +   L 
Sbjct: 412 LCFVGPPGVGKTSLGHSIARSLGRKFARISLGGIRDEAEVRGHRRTYIGAMPGRIIQTLR 471

Query: 102 NLEDRD-VLFIDEIHRL--------SIIVEEILYPAME----DFQLDLMVGEGPSARSVK 148
            ++  D V+ +DE+ ++        S  + E+L P       D  LDL            
Sbjct: 472 RVDSNDPVIMLDEVDKVGADWRGDPSSALLEVLDPEQNYNFRDNYLDL-----------P 520

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
            +LS+   IA    +  +  PL+DR  I + L+ Y  ED K  + R 
Sbjct: 521 FDLSKVMFIATANSLEPIPAPLRDRMEI-LELSGY-TEDQKVHIARN 565


>gi|294011931|ref|YP_003545391.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Sphingobium
           japonicum UT26S]
 gi|292675261|dbj|BAI96779.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Sphingobium
           japonicum UT26S]
          Length = 422

 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L VGP G GKT LAQ +A+   V F       + +AG +   + N+         
Sbjct: 111 AKSNILLVGPTGCGKTLLAQTLAKTFDVPFTMADATTLTEAGYVGEDVENIILKLLQASD 170

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDEI ++S
Sbjct: 171 YNVEKAQRGIVYIDEIDKIS 190


>gi|295689636|ref|YP_003593329.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Caulobacter
           segnis ATCC 21756]
 gi|295431539|gb|ADG10711.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Caulobacter
           segnis ATCC 21756]
          Length = 420

 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L VGP G GKT LAQ +AR + V F       + +AG +   + N+         
Sbjct: 110 AKSNILLVGPTGTGKTLLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIVLKLLQAAD 169

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDEI ++S
Sbjct: 170 YNVERAQRGIVYIDEIDKIS 189


>gi|261403255|ref|YP_003247479.1| AAA ATPase central domain protein [Methanocaldococcus vulcanius M7]
 gi|261370248|gb|ACX72997.1| AAA ATPase central domain protein [Methanocaldococcus vulcanius M7]
          Length = 371

 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 12/100 (12%)

Query: 27  LEEFTGQVEA---CSNLKVFIEAAKARAE-ALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
             E  GQ EA   C  +  ++E  +   + A  +VLF GPPG GKT +A+ +A E   +F
Sbjct: 123 FSEIVGQEEAKKKCRIIMKYLEDPELFGDWAPKNVLFYGPPGTGKTLMARALATETNSSF 182

Query: 83  RSTSGPVI--AKAGDLAALLTNLEDRD------VLFIDEI 114
                P +     GD + ++  L  +       V+FIDE+
Sbjct: 183 ILVKAPELIGEHVGDASKMIRELYQKASENAPCVVFIDEL 222


>gi|242024677|ref|XP_002432753.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212518238|gb|EEB20015.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 483

 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108
           VL VGPPG GKT LA+ VA E G  F + S   I     G+   L      +        
Sbjct: 239 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTITSKYRGESEKLVRLLFEMARFYSPST 298

Query: 109 LFIDEIHRL 117
           +FIDE+  L
Sbjct: 299 IFIDELDAL 307


>gi|297620228|ref|YP_003708333.1| AAA ATPase central domain-containing protein [Methanococcus voltae
           A3]
 gi|297379205|gb|ADI37360.1| AAA ATPase central domain protein [Methanococcus voltae A3]
          Length = 510

 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 48/109 (44%), Gaps = 11/109 (10%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +   RP+++ +  GQ +    L  +IE           +L  GPPG GKTTLA  +A + 
Sbjct: 4   VEKYRPKSMNDVAGQNKTKEQLITWIEEYIQNGGYHKPLLLAGPPGCGKTTLAYALANDY 63

Query: 79  GVNFR--------STSGPVIAKAGDLAALLTNLEDRDVLFI-DEIHRLS 118
             NF           +  VI +    AA+  +L  R  L I DE+  LS
Sbjct: 64  --NFEVIELNASDKRNKNVIQQVVGTAAVSKSLSGRRSLIILDEVDGLS 110


>gi|145596817|ref|YP_001161114.1| ATP-dependent metalloprotease FtsH [Salinispora tropica CNB-440]
 gi|145306154|gb|ABP56736.1| ATP-dependent metalloprotease FtsH [Salinispora tropica CNB-440]
          Length = 671

 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 33/59 (55%), Gaps = 6/59 (10%)

Query: 34  VEACSNLKVFIEAAKARAEAL-----DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VE    +K F++   A+ +AL       VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 183 VEELHEIKDFLQN-PAKYQALGAKIPKGVLLFGPPGTGKTLLARAVAGEAGVPFYSISG 240


>gi|126336241|ref|XP_001366708.1| PREDICTED: similar to TIP49 [Monodelphis domestica]
          Length = 456

 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 31/62 (50%)

Query: 18 DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
          D S L  +      GQ  A     V +E  K++  A   VL  GPPG GKT LA  +A+E
Sbjct: 27 DESGLAKQAASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQE 86

Query: 78 LG 79
          LG
Sbjct: 87 LG 88


>gi|148270735|ref|YP_001245195.1| ATPase [Thermotoga petrophila RKU-1]
 gi|281413040|ref|YP_003347119.1| ATPase associated with various cellular activities AAA_3
           [Thermotoga naphthophila RKU-10]
 gi|147736279|gb|ABQ47619.1| ATPase associated with various cellular activities, AAA_3
           [Thermotoga petrophila RKU-1]
 gi|281374143|gb|ADA67705.1| ATPase associated with various cellular activities AAA_3
           [Thermotoga naphthophila RKU-10]
          Length = 305

 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 68/159 (42%), Gaps = 30/159 (18%)

Query: 44  IEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL 103
           IEA  A   A  HVL    PG+GKT LA+ +A  LGV+FR           DL  L   +
Sbjct: 20  IEAVVAALLAKGHVLMEDVPGVGKTMLARALAISLGVDFRRVQFTPDLLPTDLTGLY--I 77

Query: 104 EDR--------------DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKI 149
            DR              DVL  DEI+R +   +  L  AM + Q+        +   +  
Sbjct: 78  YDRKKEDFVFKKGPVFTDVLLADEINRATPRTQSALLEAMAEGQV--------TVDGITH 129

Query: 150 NLS-RFTLIAATTRVGLL-TNPLQ----DRFGIPIRLNF 182
            LS RF +IA    +    T PL     DRF I +++ +
Sbjct: 130 KLSERFFVIATQNPIEYEGTFPLPEAQLDRFMICVKMGY 168


>gi|113970829|ref|YP_734622.1| ATP-dependent protease ATP-binding subunit ClpX [Shewanella sp.
           MR-4]
 gi|114048054|ref|YP_738604.1| ATP-dependent protease ATP-binding subunit ClpX [Shewanella sp.
           MR-7]
 gi|123131263|sp|Q0HTK8|CLPX_SHESR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|123324884|sp|Q0HHA2|CLPX_SHESM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|113885513|gb|ABI39565.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Shewanella sp.
           MR-4]
 gi|113889496|gb|ABI43547.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Shewanella sp.
           MR-7]
          Length = 426

 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LA+ +AR L V F       + +AG +   + N+            
Sbjct: 115 NILLIGPTGSGKTLLAETLARSLNVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 174

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 175 EKAQRGIVYIDEIDKIS 191


>gi|108805004|ref|YP_644941.1| FtsH-2 peptidase [Rubrobacter xylanophilus DSM 9941]
 gi|108766247|gb|ABG05129.1| FtsH-2 peptidase. Metallo peptidase. MEROPS family M41 [Rubrobacter
           xylanophilus DSM 9941]
          Length = 627

 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 31/58 (53%), Gaps = 4/58 (6%)

Query: 34  VEACSNLKVFIEA----AKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           V+  + +K F+E      K  A      L VGPPG GKT LA+ VA E GV F S SG
Sbjct: 174 VQELTEIKEFLENPQKFQKLGARIPKGALLVGPPGTGKTLLARAVAGEAGVPFFSISG 231


>gi|50303727|ref|XP_451808.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49640940|emb|CAH02201.1| KLLA0B06094p [Kluyveromyces lactis]
          Length = 360

 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 56/122 (45%), Gaps = 15/122 (12%)

Query: 6   GLLSRNVSQEDADISLLR----PRTLEEFTGQV-EACSNLKVFIEAAKARAEALDHVLFV 60
            +L+  ++ +D D+S          +EE T  V    ++ ++F E+A    EA   VL  
Sbjct: 75  SVLASVITPQDIDVSFEDIGGLEDVIEELTESVIYPLTSPEIFSESA--LLEAPKGVLLY 132

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVI--------AKAGDLAALLTNLEDRDVLFID 112
           GPPG GKT +A+ +A E G NF S     I         K  D    L N     ++FID
Sbjct: 133 GPPGCGKTMIAKALAHESGANFISIRMSSIMDKWYGESNKIVDAMFSLANKIQPCIIFID 192

Query: 113 EI 114
           EI
Sbjct: 193 EI 194


>gi|31795042|ref|NP_857535.1| hypothetical protein Mb3898 [Mycobacterium bovis AF2122/97]
 gi|121639786|ref|YP_980010.1| hypothetical protein BCG_3931 [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|224992281|ref|YP_002646971.1| hypothetical protein JTY_3933 [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|31620640|emb|CAD96084.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
 gi|121495434|emb|CAL73921.1| Conserved hypothetical protein [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|224775397|dbj|BAH28203.1| hypothetical protein JTY_3933 [Mycobacterium bovis BCG str. Tokyo
           172]
          Length = 573

 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 14/78 (17%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEE------FTGQVEACSNLKVFIEAAKARAEALDHV 57
           RE LL+   ++ D  I L R +   E         +V A   +KV        A+   H+
Sbjct: 279 RERLLAEAQAELDRQIGLTRVKNQIERYRAATLMARVRAAKGMKV--------AQPSKHM 330

Query: 58  LFVGPPGLGKTTLAQVVA 75
           +F GPPG GKTT+A+VVA
Sbjct: 331 IFTGPPGTGKTTIARVVA 348


>gi|4506753|ref|NP_003698.1| ruvB-like 1 [Homo sapiens]
 gi|73984468|ref|XP_848712.1| PREDICTED: similar to RuvB-like protein 1 isoform 2 [Canis
          familiaris]
 gi|73984478|ref|XP_857049.1| PREDICTED: similar to RuvB-like protein 1 isoform 6 [Canis
          familiaris]
 gi|291393338|ref|XP_002713193.1| PREDICTED: RuvB-like 1 [Oryctolagus cuniculus]
 gi|296225998|ref|XP_002758741.1| PREDICTED: ruvB-like 1 isoform 1 [Callithrix jacchus]
 gi|297263177|ref|XP_002798758.1| PREDICTED: ruvB-like 1-like [Macaca mulatta]
 gi|301764525|ref|XP_002917679.1| PREDICTED: ruvB-like 1-like [Ailuropoda melanoleuca]
 gi|332261767|ref|XP_003279938.1| PREDICTED: ruvB-like 1 [Nomascus leucogenys]
 gi|332817807|ref|XP_003310032.1| PREDICTED: ruvB-like 1 isoform 1 [Pan troglodytes]
 gi|28201891|sp|Q9Y265|RUVB1_HUMAN RecName: Full=RuvB-like 1; AltName: Full=49 kDa TATA box-binding
          protein-interacting protein; Short=49 kDa
          TBP-interacting protein; AltName: Full=54 kDa
          erythrocyte cytosolic protein; Short=ECP-54; AltName:
          Full=INO80 complex subunit H; AltName: Full=Nuclear
          matrix protein 238; Short=NMP 238; AltName: Full=Pontin
          52; AltName: Full=TIP49a; AltName:
          Full=TIP60-associated protein 54-alpha;
          Short=TAP54-alpha
 gi|118137422|pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
 gi|118137423|pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
 gi|118137424|pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
 gi|21305114|gb|AAM45570.1|AF380344_1 pontin 52 [Homo sapiens]
 gi|3132308|dbj|BAA28169.1| TIP49 [Homo sapiens]
 gi|3243035|gb|AAC77819.1| RuvB-like protein RUVBL1 [Homo sapiens]
 gi|3892584|emb|CAA08986.1| Nuclear matrix protein NMP238 [Homo sapiens]
 gi|4151525|gb|AAD04427.1| Pontin52 [Homo sapiens]
 gi|5327000|emb|CAB46271.1| erythrocyte cytosolic protein of 54 kDa, ECP-54 [Homo sapiens]
 gi|12804269|gb|AAH02993.1| RuvB-like 1 (E. coli) [Homo sapiens]
 gi|15277588|gb|AAH12886.1| RuvB-like 1 (E. coli) [Homo sapiens]
 gi|30582953|gb|AAP35706.1| RuvB-like 1 (E. coli) [Homo sapiens]
 gi|60655669|gb|AAX32398.1| RuvB-like 1 [synthetic construct]
 gi|60655671|gb|AAX32399.1| RuvB-like 1 [synthetic construct]
 gi|123981090|gb|ABM82374.1| RuvB-like 1 (E. coli) [synthetic construct]
 gi|123995903|gb|ABM85553.1| RuvB-like 1 (E. coli) [synthetic construct]
 gi|189055333|dbj|BAG35217.1| unnamed protein product [Homo sapiens]
 gi|197692149|dbj|BAG70038.1| RuvB-like 1 [Homo sapiens]
 gi|281347005|gb|EFB22589.1| hypothetical protein PANDA_006025 [Ailuropoda melanoleuca]
 gi|307684682|dbj|BAJ20381.1| RuvB-like 1 [synthetic construct]
          Length = 456

 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 31/62 (50%)

Query: 18 DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
          D S L  +      GQ  A     V +E  K++  A   VL  GPPG GKT LA  +A+E
Sbjct: 27 DESGLAKQAASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQE 86

Query: 78 LG 79
          LG
Sbjct: 87 LG 88


>gi|19173654|ref|NP_597457.1| TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE [Encephalitozoon cuniculi
           GB-M1]
 gi|19170860|emb|CAD26634.1| TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE [Encephalitozoon cuniculi
           GB-M1]
          Length = 506

 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 35/70 (50%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDRD------V 108
           +L  GPPG GKT L + V+     NF S  GP +I+K  GD    +  L D+       V
Sbjct: 299 ILLYGPPGCGKTLLVRAVSNMSHCNFLSIKGPELISKYVGDSEKEIRKLFDKAKQLQPCV 358

Query: 109 LFIDEIHRLS 118
           LF DEI  L 
Sbjct: 359 LFFDEIDSLC 368


>gi|85716434|ref|ZP_01047406.1| ATP-dependent protease ATP-binding subunit [Nitrobacter sp.
           Nb-311A]
 gi|85696791|gb|EAQ34677.1| ATP-dependent protease ATP-binding subunit [Nitrobacter sp.
           Nb-311A]
          Length = 400

 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+         
Sbjct: 86  AKSNILLIGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSAD 145

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDEI ++S
Sbjct: 146 YNVERAQRGIVYIDEIDKIS 165


>gi|302335826|ref|YP_003801033.1| ATP-dependent metalloprotease FtsH [Olsenella uli DSM 7084]
 gi|301319666|gb|ADK68153.1| ATP-dependent metalloprotease FtsH [Olsenella uli DSM 7084]
          Length = 633

 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 46/105 (43%), Gaps = 17/105 (16%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ EA  +L+  +   K         A      L VGPPG GKT LA+ VA E 
Sbjct: 179 TFKDVAGQDEAKESLQEIVSFLKNPDKYTEIGARCPRGALLVGPPGTGKTLLAKAVAGEA 238

Query: 79  GVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEI 114
           GV F   SG            AK  DL     N +   ++FIDEI
Sbjct: 239 GVTFFQISGSEFVEMFVGRGAAKVRDLFK-EANKKAPCIIFIDEI 282


>gi|300863957|ref|ZP_07108871.1| FtsH peptidase [Oscillatoria sp. PCC 6506]
 gi|300338031|emb|CBN54017.1| FtsH peptidase [Oscillatoria sp. PCC 6506]
          Length = 640

 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL +GPPG GKT LA+ +A E GV F S SG
Sbjct: 217 VLLIGPPGTGKTLLAKAIAGEAGVPFFSISG 247


>gi|297674296|ref|XP_002815167.1| PREDICTED: spermatogenesis-associated protein 5-like isoform 1
           [Pongo abelii]
          Length = 892

 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALL------TNLEDRDV 108
           VL  GPPG GKT +A+ VA E+G      +GP +I+K  G+  A L        L    +
Sbjct: 389 VLLYGPPGTGKTMIARAVANEVGAYVSVINGPEIISKFYGETEAKLRQIFAEATLRHPSI 448

Query: 109 LFIDEIHRLS 118
           +FIDE+  L 
Sbjct: 449 IFIDELDALC 458



 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 16/32 (50%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG  KT +A+ +A E G+NF +  GP
Sbjct: 663 VLLYGPPGCSKTMIAKALANESGLNFLAIKGP 694


>gi|298242533|ref|ZP_06966340.1| ATP-dependent metalloprotease FtsH [Ktedonobacter racemifer DSM
           44963]
 gi|297555587|gb|EFH89451.1| ATP-dependent metalloprotease FtsH [Ktedonobacter racemifer DSM
           44963]
          Length = 616

 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL--EDRD----V 108
           VL VG PG GKT +++ VA E GV+F S SG    +   G  AA + +L  E +D    +
Sbjct: 220 VLLVGAPGTGKTLISRAVAGEAGVSFYSVSGSEFVEMFVGVGAARVRDLFKEAKDHSPCI 279

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 280 IFIDEI 285


>gi|296282012|ref|ZP_06860010.1| cell division cycle protein [Citromicrobium bathyomarinum JL354]
          Length = 769

 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG------DLAALLTNLEDR--DV 108
           VL  GPPG GKT LAQ VA E    F + +GP I  +G       L  +  N       +
Sbjct: 243 VLLHGPPGTGKTRLAQAVANESDAEFFAINGPEIMGSGYGESEKRLREVFENANQAAPAI 302

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 303 IFIDEIDSIA 312



 Score = 37.0 bits (84), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 8/68 (11%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRS-TSGPVIAK-AGDLAALLTNLEDRD------VL 109
           L  GPPG GKT LA+ VA+E   NF S  S  +++K  G+    +  +  R       V+
Sbjct: 517 LLYGPPGTGKTQLAKAVAKEADANFISMKSSDLLSKWYGESEQQIAKMFRRARAVSPCVI 576

Query: 110 FIDEIHRL 117
           FIDEI  L
Sbjct: 577 FIDEIDSL 584


>gi|316933822|ref|YP_004108804.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Rhodopseudomonas palustris DX-1]
 gi|315601536|gb|ADU44071.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Rhodopseudomonas palustris DX-1]
          Length = 424

 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+         
Sbjct: 110 AKSNILLIGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 169

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDEI ++S
Sbjct: 170 YNVERAQRGIVYIDEIDKIS 189


>gi|260460896|ref|ZP_05809146.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Mesorhizobium
           opportunistum WSM2075]
 gi|319784103|ref|YP_004143579.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
 gi|259033473|gb|EEW34734.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Mesorhizobium
           opportunistum WSM2075]
 gi|317169991|gb|ADV13529.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
          Length = 424

 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L +GP G GKT LAQ +AR + V F       + +AG +   + N+         
Sbjct: 112 AKSNILLIGPTGCGKTLLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQSAD 171

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDEI ++S
Sbjct: 172 YNVERAQRGIVYIDEIDKIS 191


>gi|237798721|ref|ZP_04587182.1| peptidase S16, ATP-dependent protease La [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|237806154|ref|ZP_04592858.1| peptidase S16, ATP-dependent protease La [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331021574|gb|EGI01631.1| peptidase S16, ATP-dependent protease La [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331027267|gb|EGI07322.1| peptidase S16, ATP-dependent protease La [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 805

 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 70/166 (42%), Gaps = 40/166 (24%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAKAGDLAALLT 101
           VL VGPPG+GKT++ + +A  LG  F   S                 + A+ G L   L 
Sbjct: 387 VLLVGPPGVGKTSVGRSIAESLGRPFYRLSVGGMRDEAEIKGHRRTYIGAQPGKLVQALK 446

Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAME----DFQLDLMVGEGPSARSVK 148
           ++E  + V+ +DEI ++    +        E L P       D  LDL           +
Sbjct: 447 DVEVMNPVIMLDEIDKMGQSYQGDPASALLETLDPEQNVEFLDHYLDL-----------R 495

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           ++LS+   +     +  +  PL DR  + IRL+ Y  E+   I +R
Sbjct: 496 LDLSKVLFVCTANTLDSIPGPLLDRMEV-IRLSGYITEEKLAIAKR 540


>gi|197103210|ref|YP_002128588.1| ATP-dependent protease LA [Phenylobacterium zucineum HLK1]
 gi|196480486|gb|ACG80013.1| ATP-dependent protease LA [Phenylobacterium zucineum HLK1]
          Length = 792

 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 70/162 (43%), Gaps = 32/162 (19%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVI--------------AKAGDLAALLT 101
           + FVGPPG+GKT+L Q +AR +   F R + G V               A  G++   + 
Sbjct: 358 LCFVGPPGVGKTSLGQSIARAMHRPFVRVSLGGVHDESEIRGHRRTYVGALPGNIIQAIR 417

Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLS 152
               RD V+ +DEI ++S  +         E+L P       D  +       +V  +LS
Sbjct: 418 KAGRRDCVMMLDEIDKMSAGLHGDPSAALLEVLDPEQNATFRDNYL-------AVPFDLS 470

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           R   +     +  +  PL+DR  I I+L+ Y   +   I +R
Sbjct: 471 RVVFLTTANMLDTIPGPLRDRMEI-IQLSGYTAGEKLQIAER 511


>gi|110668618|ref|YP_658429.1| AAA-type ATPase (transitional ATPase homolog) [Haloquadratum
           walsbyi DSM 16790]
 gi|109626365|emb|CAJ52824.1| AAA-type ATPase (transitional ATPase homolog) [Haloquadratum
           walsbyi DSM 16790]
          Length = 753

 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 23/34 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL  GPPG GKT +A+ VA E+  +F + SGP I
Sbjct: 226 VLLHGPPGTGKTLIAKAVANEIDASFHTISGPEI 259



 Score = 40.0 bits (92), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 499 VLMYGPPGTGKTMLAKAVANESESNFISVKGP 530


>gi|86749682|ref|YP_486178.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodopseudomonas
           palustris HaA2]
 gi|123292611|sp|Q2IWZ3|CLPX_RHOP2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|86572710|gb|ABD07267.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Rhodopseudomonas palustris HaA2]
          Length = 424

 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+         
Sbjct: 110 AKSNILLIGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 169

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDEI ++S
Sbjct: 170 YNVERAQRGIVYIDEIDKIS 189


>gi|74226963|dbj|BAE27123.1| unnamed protein product [Mus musculus]
          Length = 456

 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 31/62 (50%)

Query: 18 DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
          D S L  +      GQ  A     V +E  K++  A   VL  GPPG GKT LA  +A+E
Sbjct: 27 DESGLAKQAASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQE 86

Query: 78 LG 79
          LG
Sbjct: 87 LG 88


>gi|194333458|ref|YP_002015318.1| ATP-dependent protease ATP-binding subunit ClpX [Prosthecochloris
           aestuarii DSM 271]
 gi|238693326|sp|B4S620|CLPX_PROA2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|194311276|gb|ACF45671.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Prosthecochloris aestuarii DSM 271]
          Length = 439

 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLT--------NL 103
           ++L +GP G GKT LAQ +A  L V F       + +AG    D+  +LT        NL
Sbjct: 133 NILLIGPTGTGKTLLAQTLANLLDVPFTIVDATSLTEAGYVGDDVETILTRLLQASDFNL 192

Query: 104 E--DRDVLFIDEIHRLS 118
           E  +R ++++DEI +++
Sbjct: 193 ERAERGIIYVDEIDKIA 209


>gi|308475041|ref|XP_003099740.1| hypothetical protein CRE_23600 [Caenorhabditis remanei]
 gi|308266395|gb|EFP10348.1| hypothetical protein CRE_23600 [Caenorhabditis remanei]
          Length = 329

 Score = 40.4 bits (93), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 52/124 (41%), Gaps = 21/124 (16%)

Query: 6   GLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV------- 57
           G L+ N+S ED  +IS           G  E    L+ F++ +    E  D V       
Sbjct: 66  GPLANNMSPEDPGNISY------SHVGGLAEQIRELREFVDLSLINLELFDRVGISPPKG 119

Query: 58  -LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED--RD----VLF 110
            L  GPPG GKT LA+ VA E   N+     P I    D    +    D  RD    ++F
Sbjct: 120 CLLFGPPGNGKTLLARAVAFESEYNYVEVVSPTIVNYEDSVKTIRGTFDHARDHQPCIIF 179

Query: 111 IDEI 114
           +DEI
Sbjct: 180 MDEI 183


>gi|302190914|ref|ZP_07267168.1| DNA polymerase III, gamma/tau subunit [Lactobacillus iners AB-1]
          Length = 583

 Score = 40.4 bits (93), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 6/77 (7%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
          RPRT E   GQ   C  L+  I+  K     + H  LF GP G GKT+ A++ A+ +   
Sbjct: 11 RPRTFEAVVGQSAICDTLRNSIKRHK-----ISHAFLFSGPRGTGKTSCAKIFAKAINCM 65

Query: 82 FRSTSGPVIAKAGDLAA 98
                P    +  LAA
Sbjct: 66 DSKDGEPCNQCSNCLAA 82


>gi|302759084|ref|XP_002962965.1| hypothetical protein SELMODRAFT_78692 [Selaginella moellendorffii]
 gi|300169826|gb|EFJ36428.1| hypothetical protein SELMODRAFT_78692 [Selaginella moellendorffii]
          Length = 516

 Score = 40.4 bits (93), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLED------RDV 108
           VL  GPPG GKT LA+ VA E G  F + S   +A    G+   ++  L D         
Sbjct: 271 VLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPST 330

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 331 IFIDEIDSL 339


>gi|281414009|ref|ZP_06245751.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Micrococcus
           luteus NCTC 2665]
          Length = 358

 Score = 40.4 bits (93), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDV 108
           ++L VGP G GKT LAQ +AR L V F       + +AG +   + N+        D DV
Sbjct: 51  NILMVGPTGSGKTYLAQTLARRLNVPFAVADATSLTEAGYVGEDVENILLKLIQAADYDV 110

Query: 109 -------LFIDEIHRLS 118
                  ++IDEI ++S
Sbjct: 111 KKAEQGIIYIDEIDKIS 127


>gi|260945197|ref|XP_002616896.1| hypothetical protein CLUG_02340 [Clavispora lusitaniae ATCC 42720]
 gi|238848750|gb|EEQ38214.1| hypothetical protein CLUG_02340 [Clavispora lusitaniae ATCC 42720]
          Length = 391

 Score = 40.4 bits (93), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 32/66 (48%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA--------KAGDLAALLTNLEDRDV 108
           VLF GPPG GKT LA+ +A+E G  F S     +         K  D    L N     +
Sbjct: 168 VLFYGPPGCGKTMLAKAIAKESGAFFLSIRMSTVMDKWYGESNKIVDAIFSLANKLQPCI 227

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 228 IFIDEI 233


>gi|241958412|ref|XP_002421925.1| mitochondrial membrane-spanning ATPase, putative [Candida
           dubliniensis CD36]
 gi|223645270|emb|CAX39926.1| mitochondrial membrane-spanning ATPase, putative [Candida
           dubliniensis CD36]
          Length = 369

 Score = 40.4 bits (93), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 32/66 (48%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--------AKAGDLAALLTNLEDRDV 108
           VLF GPPG GKT LA+ +A+E G  F S     I         K  D    L N     +
Sbjct: 137 VLFYGPPGCGKTMLAKAIAKESGAFFLSIRMSSIMDKWYGESNKITDAIFSLANKLQPCI 196

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 197 IFIDEI 202


>gi|217979045|ref|YP_002363192.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylocella
           silvestris BL2]
 gi|254763855|sp|B8EIL3|CLPX_METSB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|217504421|gb|ACK51830.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylocella
           silvestris BL2]
          Length = 421

 Score = 40.4 bits (93), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+         
Sbjct: 110 AKSNILLIGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASD 169

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDEI ++S
Sbjct: 170 YNVERAQRGIVYIDEIDKIS 189


>gi|197692395|dbj|BAG70161.1| RuvB-like 1 [Homo sapiens]
          Length = 456

 Score = 40.4 bits (93), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 31/62 (50%)

Query: 18 DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
          D S L  +      GQ  A     V +E  K++  A   VL  GPPG GKT LA  +A+E
Sbjct: 27 DESGLAKQAASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQE 86

Query: 78 LG 79
          LG
Sbjct: 87 LG 88


>gi|218248318|ref|YP_002373689.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8801]
 gi|257060355|ref|YP_003138243.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8802]
 gi|218168796|gb|ACK67533.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8801]
 gi|256590521|gb|ACV01408.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8802]
          Length = 673

 Score = 40.4 bits (93), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 49/104 (47%), Gaps = 15/104 (14%)

Query: 26  TLEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  EA + L   +E        +K  A     VL VGPPG GKT LA+ VA E 
Sbjct: 208 TFNDVAGAEEAKTELVEIVEFLKNPERFSKIGARIPKGVLLVGPPGTGKTLLAKAVAGEA 267

Query: 79  GVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEI 114
           GV F S S     +   G  AA + +L ++       ++FIDE+
Sbjct: 268 GVTFFSISASEFVELFVGTGAARVRDLFEQAKKQAPCIIFIDEL 311


>gi|124025672|ref|YP_001014788.1| FtsH ATP-dependent protease-like protein [Prochlorococcus marinus
           str. NATL1A]
 gi|123960740|gb|ABM75523.1| FtsH ATP-dependent protease-like protein [Prochlorococcus marinus
           str. NATL1A]
          Length = 640

 Score = 40.4 bits (93), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 217 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSG 247


>gi|119625618|gb|EAX05213.1| spermatogenesis associated 5, isoform CRA_a [Homo sapiens]
          Length = 856

 Score = 40.4 bits (93), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALL------TNLEDRDV 108
           VL  GPPG GKT +A+ VA E+G      +GP +I+K  G+  A L        L    +
Sbjct: 353 VLLYGPPGTGKTMIARAVANEVGAYVSVINGPEIISKFYGETEAKLRQIFAEATLRHPSI 412

Query: 109 LFIDEIHRL 117
           +FIDE+  L
Sbjct: 413 IFIDELDAL 421



 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 16/32 (50%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG  KT +A+ +A E G+NF +  GP
Sbjct: 627 VLLYGPPGCSKTMIAKALANESGLNFLAIKGP 658


>gi|117921101|ref|YP_870293.1| ATP-dependent protease ATP-binding subunit ClpX [Shewanella sp.
           ANA-3]
 gi|166215205|sp|A0KYL8|CLPX_SHESA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|117613433|gb|ABK48887.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella
           sp. ANA-3]
          Length = 426

 Score = 40.4 bits (93), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LA+ +AR L V F       + +AG +   + N+            
Sbjct: 115 NILLIGPTGSGKTLLAETLARSLNVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 174

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 175 EKAQRGIVYIDEIDKIS 191


>gi|62896709|dbj|BAD96295.1| TATA binding protein interacting protein 49 kDa variant [Homo
          sapiens]
          Length = 456

 Score = 40.4 bits (93), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 31/62 (50%)

Query: 18 DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
          D S L  +      GQ  A     V +E  K++  A   VL  GPPG GKT LA  +A+E
Sbjct: 27 DESGLAKQAASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQE 86

Query: 78 LG 79
          LG
Sbjct: 87 LG 88


>gi|29476791|gb|AAH48217.1| SPATA5 protein [Homo sapiens]
          Length = 695

 Score = 40.4 bits (93), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALL------TNLEDRDV 108
           VL  GPPG GKT +A+ VA E+G      +GP +I+K  G+  A L        L    +
Sbjct: 389 VLLYGPPGTGKTMIARAVANEVGAYVSVINGPEIISKFYGETEAKLRQIFAEATLRHPSI 448

Query: 109 LFIDEIHRLS 118
           +FIDE+  L 
Sbjct: 449 IFIDELDALC 458


>gi|89900347|ref|YP_522818.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodoferax
           ferrireducens T118]
 gi|122479496|sp|Q21Y66|CLPX_RHOFD RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|89345084|gb|ABD69287.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhodoferax
           ferrireducens T118]
          Length = 421

 Score = 40.4 bits (93), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+         
Sbjct: 114 AKSNILLIGPTGSGKTLLAQTLARMLDVPFVMADATTLTEAGYVGEDVENIVLKLLQSCN 173

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDEI ++S
Sbjct: 174 YEVERAQRGIVYIDEIDKIS 193


>gi|27311537|gb|AAO00734.1| Lon protease homolog 1 precursor [Arabidopsis thaliana]
 gi|34098905|gb|AAQ56835.1| At5g47040 [Arabidopsis thaliana]
          Length = 557

 Score = 40.4 bits (93), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 84/206 (40%), Gaps = 33/206 (16%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQ 72
           + + D+   + R   +  G  +    +  ++   K + +A   VL FVGPPG+GKT+LA 
Sbjct: 29  EHELDLKAAKERLDSDHYGLAKVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLAS 88

Query: 73  VVARELGVNF-RSTSGPVIAKA----------GDLAALLTNLEDR-----DVLFIDEIHR 116
            +A  LG  F R + G V  +A          G +   L +   R      V+ +DEI +
Sbjct: 89  SIAAALGRKFVRLSLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEIDK 148

Query: 117 LSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
               V         E+L P       D  +       +V  +LS+   +A   RV  +  
Sbjct: 149 TGSDVRGDPASALLEVLDPEQNKSFNDHYL-------NVPYDLSKVVFVATANRVQPIPP 201

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQR 194
           PL DR  + I L  Y  E+   I  R
Sbjct: 202 PLLDRMEL-IELPGYTQEEKLKIAMR 226


>gi|78223596|ref|YP_385343.1| FtsH peptidase [Geobacter metallireducens GS-15]
 gi|78194851|gb|ABB32618.1| FtsH peptidase, Metallo peptidase, MEROPS family M41 [Geobacter
           metallireducens GS-15]
          Length = 619

 Score = 40.4 bits (93), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108
           VL VGPPG GKT LA+ VA E GV F S +        V   AG +  L    +     +
Sbjct: 211 VLLVGPPGTGKTLLARAVAGEAGVTFLSITASQFIEMFVGVGAGRVRDLFATAKKSAPSI 270

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 271 IFIDEI 276


>gi|20088903|ref|NP_614978.1| IstB helper protein [Methanosarcina acetivorans C2A]
 gi|20090392|ref|NP_616467.1| IstB helper protein [Methanosarcina acetivorans C2A]
 gi|20090436|ref|NP_616511.1| IstB helper protein [Methanosarcina acetivorans C2A]
 gi|20090733|ref|NP_616808.1| IstB helper protein [Methanosarcina acetivorans C2A]
 gi|20090876|ref|NP_616951.1| IstB helper protein [Methanosarcina acetivorans C2A]
 gi|20091645|ref|NP_617720.1| IstB helper protein [Methanosarcina acetivorans C2A]
 gi|20092245|ref|NP_618320.1| IstB helper protein [Methanosarcina acetivorans C2A]
 gi|20092315|ref|NP_618390.1| IstB helper protein [Methanosarcina acetivorans C2A]
 gi|20092558|ref|NP_618633.1| IstB helper protein [Methanosarcina acetivorans C2A]
 gi|20092926|ref|NP_619001.1| IstB helper protein [Methanosarcina acetivorans C2A]
 gi|20093314|ref|NP_619389.1| IstB helper protein [Methanosarcina acetivorans C2A]
 gi|19913745|gb|AAM03458.1| IstB helper protein [Methanosarcina acetivorans C2A]
 gi|19915401|gb|AAM04947.1| IstB helper protein [Methanosarcina acetivorans C2A]
 gi|19915450|gb|AAM04991.1| IstB helper protein [Methanosarcina acetivorans C2A]
 gi|19915788|gb|AAM05288.1| IstB helper protein [Methanosarcina acetivorans C2A]
 gi|19915950|gb|AAM05431.1| IstB helper protein [Methanosarcina acetivorans C2A]
 gi|19916813|gb|AAM06200.1| IstB helper protein [Methanosarcina acetivorans C2A]
 gi|19917480|gb|AAM06800.1| IstB helper protein [Methanosarcina acetivorans C2A]
 gi|19917560|gb|AAM06870.1| IstB helper protein [Methanosarcina acetivorans C2A]
 gi|19917831|gb|AAM07113.1| IstB helper protein [Methanosarcina acetivorans C2A]
 gi|19918237|gb|AAM07481.1| IstB helper protein [Methanosarcina acetivorans C2A]
 gi|19918673|gb|AAM07869.1| IstB helper protein [Methanosarcina acetivorans C2A]
          Length = 257

 Score = 40.4 bits (93), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 51/103 (49%), Gaps = 13/103 (12%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAKAR-AEALDHVLFVGPPGLGKTTLA-----QVVARE 77
            +TLEEF  + +   + K   + A  R     ++V+F+GPPG+GK+ LA     +V    
Sbjct: 71  KKTLEEFDFEFQKSIDKKAIEDLATLRFVHNSENVVFLGPPGVGKSHLAIALGIEVAKAG 130

Query: 78  LGVNFRSTSGPVIAK------AGDLAALLTNLEDRDVLFIDEI 114
           + V F +T G +I K       G L   L +L    VL IDEI
Sbjct: 131 ISVYFTNT-GNLIEKLKIANREGMLEKKLRDLMKYKVLIIDEI 172


>gi|20089920|ref|NP_615995.1| IstB helper protein [Methanosarcina acetivorans C2A]
 gi|19914877|gb|AAM04475.1| IstB helper protein [Methanosarcina acetivorans C2A]
          Length = 257

 Score = 40.4 bits (93), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 51/103 (49%), Gaps = 13/103 (12%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAKAR-AEALDHVLFVGPPGLGKTTLA-----QVVARE 77
            +TLEEF  + +   + K   + A  R     ++V+F+GPPG+GK+ LA     +V    
Sbjct: 71  KKTLEEFDFEFQKSIDKKAIEDLATLRFVHNSENVVFLGPPGVGKSHLAIALGIEVAKAG 130

Query: 78  LGVNFRSTSGPVIAK------AGDLAALLTNLEDRDVLFIDEI 114
           + V F +T G +I K       G L   L +L    VL IDEI
Sbjct: 131 ISVYFTNT-GNLIEKLKIANREGMLEKKLRDLMKYKVLIIDEI 172


>gi|169768094|ref|XP_001818518.1| hypothetical protein AOR_1_2826174 [Aspergillus oryzae RIB40]
 gi|238485043|ref|XP_002373760.1| AAA family ATPase/60S ribosome export protein Rix7, putative
           [Aspergillus flavus NRRL3357]
 gi|83766373|dbj|BAE56516.1| unnamed protein product [Aspergillus oryzae]
 gi|220701810|gb|EED58148.1| AAA family ATPase/60S ribosome export protein Rix7, putative
           [Aspergillus flavus NRRL3357]
          Length = 735

 Score = 40.4 bits (93), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 512 VLLWGPPGCGKTLLAKAVANESHANFISVKGP 543



 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 20/34 (58%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL  GPPG GKT +A   A ELGV F S S P I
Sbjct: 208 VLLHGPPGCGKTMIANAFAAELGVPFISISAPSI 241


>gi|67622295|ref|XP_667804.1| replication factor c subunit 4 [Cryptosporidium hominis TU502]
 gi|54658967|gb|EAL37571.1| replication factor c subunit 4 [Cryptosporidium hominis]
          Length = 327

 Score = 40.4 bits (93), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 5/60 (8%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          I   RP+ L+E  G  E  + LKV      A+   + ++L  GPPG GKTT    +A E+
Sbjct: 7  IEKYRPKILDEMVGNEEVLTRLKVL-----AKHGNMPNLLLSGPPGTGKTTSIHCLASEM 61


>gi|319425893|gb|ADV53967.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella
           putrefaciens 200]
          Length = 426

 Score = 40.4 bits (93), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LA+ +AR L V F       + +AG +   + N+            
Sbjct: 115 NILLIGPTGSGKTLLAETLARSLNVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 174

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 175 EKAQRGIVYIDEIDKIS 191


>gi|325111245|ref|YP_004272313.1| DNA polymerase III subunits gamma and tau [Planctomyces
           brasiliensis DSM 5305]
 gi|324971513|gb|ADY62291.1| DNA polymerase III, subunits gamma and tau [Planctomyces
           brasiliensis DSM 5305]
          Length = 593

 Score = 40.4 bits (93), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 8/91 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T +   GQ      L+  I     RAE + H  LF G  G+GKT++A+++A+ L   
Sbjct: 16  RPQTFDAVVGQQHVAQALRNAI-----RAERVAHAYLFTGARGVGKTSMARILAKALNCT 70

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID 112
                 P      +L   ++   D DV+ ID
Sbjct: 71  NSQDGNPC--NQCELCQAISTGSDVDVMEID 99


>gi|302343613|ref|YP_003808142.1| ATP-dependent metalloprotease FtsH [Desulfarculus baarsii DSM 2075]
 gi|301640226|gb|ADK85548.1| ATP-dependent metalloprotease FtsH [Desulfarculus baarsii DSM 2075]
          Length = 609

 Score = 40.4 bits (93), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT L++ VA E GV F S SG       V   A  +  L    +++   +
Sbjct: 189 VLLVGPPGTGKTLLSRAVAGEAGVPFFSISGSEFVELFVGVGAARVRELFAQAKEKAPCI 248

Query: 109 LFIDEIHRLS 118
           +FIDE+  L 
Sbjct: 249 IFIDELDALG 258


>gi|302761752|ref|XP_002964298.1| hypothetical protein SELMODRAFT_166381 [Selaginella moellendorffii]
 gi|300168027|gb|EFJ34631.1| hypothetical protein SELMODRAFT_166381 [Selaginella moellendorffii]
          Length = 600

 Score = 40.4 bits (93), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA-----KAGDLAALLTNLEDR---DV 108
           +L  GPPG GKT LA+ VA E G NF + S   IA     +A      +  L  +    V
Sbjct: 334 LLLFGPPGTGKTMLAKAVATEAGANFINISMSTIASKWFGEAEKYVKAVFTLASKISPSV 393

Query: 109 LFIDEI 114
           +FIDE+
Sbjct: 394 VFIDEV 399


>gi|259501365|ref|ZP_05744267.1| DNA polymerase III [Lactobacillus iners DSM 13335]
 gi|259167218|gb|EEW51713.1| DNA polymerase III [Lactobacillus iners DSM 13335]
          Length = 605

 Score = 40.4 bits (93), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 6/77 (7%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPRT E   GQ   C  L+  I+  K     + H  LF GP G GKT+ A++ A+ +   
Sbjct: 33  RPRTFEAVVGQSAICDTLRNSIKRHK-----ISHAFLFSGPRGTGKTSCAKIFAKAINCM 87

Query: 82  FRSTSGPVIAKAGDLAA 98
                 P    +  LAA
Sbjct: 88  DSKDGEPCNQCSNCLAA 104


>gi|254469906|ref|ZP_05083311.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudovibrio
           sp. JE062]
 gi|211961741|gb|EEA96936.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudovibrio
           sp. JE062]
          Length = 421

 Score = 40.4 bits (93), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L VGP G GKT LAQ +AR L V F       + +AG +   + N+         
Sbjct: 110 AKSNILLVGPTGCGKTHLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 169

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDE+ +++
Sbjct: 170 YNVERAQRGIVYIDEVDKIT 189


>gi|154506029|ref|ZP_02042767.1| hypothetical protein RUMGNA_03571 [Ruminococcus gnavus ATCC 29149]
 gi|153793528|gb|EDN75948.1| hypothetical protein RUMGNA_03571 [Ruminococcus gnavus ATCC 29149]
          Length = 424

 Score = 40.4 bits (93), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 28/129 (21%)

Query: 18  DISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEA---------LDHVLFVGPP 63
           DI+LL P  ++ F      GQ EA   L V +     R  A           ++L +GP 
Sbjct: 61  DINLLTPEEIKAFLDEYVIGQDEAKKVLSVAVYNHYKRIMAGSDLGVDLQKSNILMLGPT 120

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL----------EDRDVL 109
           G GKT LAQ +A+ L V F       + +AG    D+ ++L  +           +  ++
Sbjct: 121 GCGKTLLAQTLAKILNVPFAIADATALTEAGYVGEDVESILLKVIQAADGDIERAEHGII 180

Query: 110 FIDEIHRLS 118
           +IDEI +++
Sbjct: 181 YIDEIDKIT 189


>gi|149728221|ref|XP_001488151.1| PREDICTED: similar to RuvB-like 1 (49 kDa TATA box-binding
          protein-interacting protein) (49 kDa TBP-interacting
          protein) (TIP49a) (Pontin 52) (Nuclear matrix protein
          238) (NMP 238) (54 kDa erythrocyte cytosolic protein)
          [Equus caballus]
          Length = 456

 Score = 40.4 bits (93), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 31/62 (50%)

Query: 18 DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
          D S L  +      GQ  A     V +E  K++  A   VL  GPPG GKT LA  +A+E
Sbjct: 27 DESGLAKQAASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQE 86

Query: 78 LG 79
          LG
Sbjct: 87 LG 88


>gi|117646480|emb|CAL38707.1| hypothetical protein [synthetic construct]
          Length = 893

 Score = 40.4 bits (93), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALL------TNLEDRDV 108
           VL  GPPG GKT +A+ VA E+G      +GP +I+K  G+  A L        L    +
Sbjct: 390 VLLYGPPGTGKTMIARAVANEVGAYVSVINGPEIISKFYGETEAKLRQIFAEATLRHPSI 449

Query: 109 LFIDEIHRL 117
           +FIDE+  L
Sbjct: 450 IFIDELDAL 458



 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 16/32 (50%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG  KT +A+ +A E G+NF +  GP
Sbjct: 664 VLLYGPPGCSKTMIAKALANESGLNFLAIKGP 695


>gi|114595942|ref|XP_517427.2| PREDICTED: spermatogenesis-associated protein 5 isoform 2 [Pan
           troglodytes]
          Length = 893

 Score = 40.4 bits (93), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALL------TNLEDRDV 108
           VL  GPPG GKT +A+ VA E+G      +GP +I+K  G+  A L        L    +
Sbjct: 390 VLLYGPPGTGKTMIARAVANEVGAYVSVINGPEIISKFYGETEAKLRQIFAEATLRHPSI 449

Query: 109 LFIDEIHRLS 118
           +FIDE+  L 
Sbjct: 450 IFIDELDALC 459



 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 16/32 (50%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG  KT +A+ +A E G+NF +  GP
Sbjct: 664 VLLYGPPGCSKTMIAKALANESGLNFLAIKGP 695


>gi|21749742|dbj|BAC03651.1| unnamed protein product [Homo sapiens]
          Length = 893

 Score = 40.4 bits (93), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALL------TNLEDRDV 108
           VL  GPPG GKT +A+ VA E+G      +GP +I+K  G+  A L        L    +
Sbjct: 390 VLLYGPPGTGKTMIARAVANEVGAYVSVINGPEIISKFYGETEAKLRQIFAEATLRHPSI 449

Query: 109 LFIDEIHRL 117
           +FIDE+  L
Sbjct: 450 IFIDELDAL 458



 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 16/32 (50%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG  KT +A+ +A E G+NF +  GP
Sbjct: 664 VLLYGPPGCSKTMIAKALANESGLNFLAIKGP 695


>gi|84996219|ref|XP_952831.1| 26S proteasome ATPase subunit [Theileria annulata strain Ankara]
 gi|65303829|emb|CAI76206.1| 26S proteasome ATPase subunit, putative [Theileria annulata]
          Length = 448

 Score = 40.4 bits (93), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA-GDLAALLTNL----EDRD--V 108
           VL  GPPG GKT LA+ +A +LG NF +  +  V+ K  G+ A ++  +    +D    +
Sbjct: 229 VLLYGPPGTGKTLLARALANDLGCNFLKVVASAVVDKYIGESAKIIREMFGYAKDNQPCI 288

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 289 IFIDEI 294


>gi|75761782|ref|ZP_00741718.1| Cell division protein ftsH / Peptidase family M41 [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|74490732|gb|EAO54012.1| Cell division protein ftsH  / Peptidase family M41 [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
          Length = 267

 Score = 40.4 bits (93), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S SG
Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISG 228


>gi|66359084|ref|XP_626720.1| replication factor C like AAA+ ATpase [Cryptosporidium parvum
          Iowa II]
 gi|46228380|gb|EAK89279.1| replication factor C like AAA+ ATpase [Cryptosporidium parvum
          Iowa II]
          Length = 339

 Score = 40.4 bits (93), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 5/60 (8%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          I   RP+ L+E  G  E  + LKV      A+   + ++L  GPPG GKTT    +A E+
Sbjct: 19 IEKYRPKILDEMVGNEEVLTRLKVL-----AKHGNMPNLLLSGPPGTGKTTSIHCLASEM 73


>gi|331092500|ref|ZP_08341322.1| hypothetical protein HMPREF9477_01965 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330400721|gb|EGG80324.1| hypothetical protein HMPREF9477_01965 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 611

 Score = 40.4 bits (93), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F + SG
Sbjct: 199 VLLVGPPGTGKTLLAKAVAGEAGVPFFTISG 229


>gi|224070736|ref|XP_002186835.1| PREDICTED: hypothetical protein [Taeniopygia guttata]
          Length = 751

 Score = 40.4 bits (93), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 17/25 (68%), Positives = 18/25 (72%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVN 81
            L  GPPGLGKTTLA V+AR  G N
Sbjct: 302 ALLCGPPGLGKTTLAHVIARHAGYN 326



 Score = 40.4 bits (93), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 17/25 (68%), Positives = 18/25 (72%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVN 81
            L  GPPGLGKTTLA V+AR  G N
Sbjct: 669 ALLCGPPGLGKTTLAHVIARHAGYN 693


>gi|253701836|ref|YP_003023025.1| ATP-dependent protease La [Geobacter sp. M21]
 gi|251776686|gb|ACT19267.1| ATP-dependent protease La [Geobacter sp. M21]
          Length = 800

 Score = 40.4 bits (93), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 75/183 (40%), Gaps = 45/183 (24%)

Query: 43  FIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNF------------------R 83
           FI   K + +    +L  VGPPG+GKT++ + +A  LG  F                  R
Sbjct: 363 FIAVGKMKGDISGSILCLVGPPGVGKTSIGKSIADALGRTFYRFSLGGMRDEAEIKGHRR 422

Query: 84  STSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE--------EILYP----AMED 131
           +  G +  K   + A+ +      VL +DEI ++    +        E+L P    +  D
Sbjct: 423 TYIGAMPGKF--VQAMKSAGSSNPVLMLDEIDKIGASFQGDPASALLEVLDPEQNGSFRD 480

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
             LD           V  +LS    IA   ++  +  PL DR  + IRL+ Y +E+   I
Sbjct: 481 HYLD-----------VPFDLSNVLFIATANQLDTIPAPLLDRMEV-IRLSGYVLEEKMEI 528

Query: 192 VQR 194
            +R
Sbjct: 529 ARR 531


>gi|155371883|ref|NP_001094546.1| ruvB-like 1 [Bos taurus]
 gi|154426056|gb|AAI51552.1| RUVBL1 protein [Bos taurus]
 gi|296474623|gb|DAA16738.1| RuvB-like 1 [Bos taurus]
          Length = 456

 Score = 40.4 bits (93), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 31/62 (50%)

Query: 18 DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
          D S L  +      GQ  A     V +E  K++  A   VL  GPPG GKT LA  +A+E
Sbjct: 27 DESGLAKQAASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQE 86

Query: 78 LG 79
          LG
Sbjct: 87 LG 88


>gi|119625619|gb|EAX05214.1| spermatogenesis associated 5, isoform CRA_b [Homo sapiens]
          Length = 890

 Score = 40.4 bits (93), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALL------TNLEDRDV 108
           VL  GPPG GKT +A+ VA E+G      +GP +I+K  G+  A L        L    +
Sbjct: 390 VLLYGPPGTGKTMIARAVANEVGAYVSVINGPEIISKFYGETEAKLRQIFAEATLRHPSI 449

Query: 109 LFIDEIHRLS 118
           +FIDE+  L 
Sbjct: 450 IFIDELDALC 459



 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 16/32 (50%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG  KT +A+ +A E G+NF +  GP
Sbjct: 661 VLLYGPPGCSKTMIAKALANESGLNFLAIKGP 692


>gi|32266378|ref|NP_860410.1| ATP-dependent zinc metalloproteinase [Helicobacter hepaticus ATCC
           51449]
 gi|32262428|gb|AAP77476.1| ATP-dependent zinc metalloproteinase [Helicobacter hepaticus ATCC
           51449]
          Length = 562

 Score = 40.4 bits (93), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL VGPPG+GKT +A+ VA E GV F   SG 
Sbjct: 199 VLLVGPPGVGKTMIAKAVAGEAGVPFFYQSGS 230


>gi|39936025|ref|NP_948301.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodopseudomonas
           palustris CGA009]
 gi|192291680|ref|YP_001992285.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodopseudomonas
           palustris TIE-1]
 gi|61211520|sp|Q6N5L4|CLPX_RHOPA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|229484081|sp|B3Q7P4|CLPX_RHOPT RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|39649879|emb|CAE28401.1| ATP-dependent Clp protease ATP binding subunit ClpX
           [Rhodopseudomonas palustris CGA009]
 gi|192285429|gb|ACF01810.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Rhodopseudomonas palustris TIE-1]
          Length = 424

 Score = 40.4 bits (93), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+         
Sbjct: 110 AKSNILLIGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 169

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDEI ++S
Sbjct: 170 YNVERAQRGIVYIDEIDKIS 189


>gi|86133647|ref|ZP_01052229.1| DNA polymerase III subunit gamma/tau [Polaribacter sp. MED152]
 gi|85820510|gb|EAQ41657.1| DNA polymerase III subunit gamma/tau [Polaribacter sp. MED152]
          Length = 561

 Score = 40.4 bits (93), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 99/238 (41%), Gaps = 40/238 (16%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  E+  GQ +A +N    +E A         +LF GP G+GKT+ A+++A+++    
Sbjct: 12  RPQNFEDVVGQ-QAITNT---LENAIKNNHLAQALLFTGPRGVGKTSCARILAKKINQQE 67

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS--------------IIVEEILYPA 128
             +S     +  D A  +  L+      +D+I  L+               I++E+   +
Sbjct: 68  VESS-----EDEDFAFNIFELDAASNNSVDDIRSLTDQVRIPPQTGKYKVYIIDEVHMLS 122

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE-- 186
              F   L   E P A ++         I ATT    +   +  R  I    +F  I   
Sbjct: 123 QAAFNAFLKTLEEPPAHAI--------FILATTEKHKIIPTILSRCQI---FDFKRIGVL 171

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           D K  ++  ++  G+   D+A   IA ++ G  R A  +  RV  F+     K +TRE
Sbjct: 172 DAKNYLKTISEKEGINADDDALHIIAQKADGAMRDALSIFDRVVSFS----GKELTRE 225


>gi|68481793|ref|XP_715138.1| hypothetical protein CaO19.4362 [Candida albicans SC5314]
 gi|68481896|ref|XP_715087.1| hypothetical protein CaO19.11840 [Candida albicans SC5314]
 gi|46436695|gb|EAK96053.1| hypothetical protein CaO19.11840 [Candida albicans SC5314]
 gi|46436748|gb|EAK96105.1| hypothetical protein CaO19.4362 [Candida albicans SC5314]
 gi|238879825|gb|EEQ43463.1| hypothetical protein CAWG_01700 [Candida albicans WO-1]
          Length = 369

 Score = 40.4 bits (93), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 32/66 (48%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--------AKAGDLAALLTNLEDRDV 108
           VLF GPPG GKT LA+ +A+E G  F S     I         K  D    L N     +
Sbjct: 137 VLFYGPPGCGKTMLAKAIAKESGAFFLSIRMSSIMDKWYGESNKITDAIFSLANKLQPCI 196

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 197 IFIDEI 202


>gi|322795747|gb|EFZ18426.1| hypothetical protein SINV_08833 [Solenopsis invicta]
          Length = 511

 Score = 40.4 bits (93), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA-----KAGDLAALLTNLED---RDV 108
           VL VGPPG GKT LA+ VA E G  F + S   +      ++  L  LL  +        
Sbjct: 267 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPST 326

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 327 IFIDEIDSL 335


>gi|319957420|ref|YP_004168683.1| membrane protease ftsh catalytic subunit [Nitratifractor salsuginis
           DSM 16511]
 gi|319419824|gb|ADV46934.1| membrane protease FtsH catalytic subunit [Nitratifractor salsuginis
           DSM 16511]
          Length = 696

 Score = 40.4 bits (93), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL------EDRDV 108
           VL VGPPG GKT LA+ VA E  V F S SG    +   G  A+ + +L      E   +
Sbjct: 219 VLLVGPPGTGKTLLAKAVAGEASVPFFSVSGSSFIEMFVGVGASRVRDLFEQAKKEAPSI 278

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 279 IFIDEI 284


>gi|315425403|dbj|BAJ47068.1| replication factor C small subunit [Candidatus Caldiarchaeum
          subterraneum]
 gi|315427367|dbj|BAJ48977.1| replication factor C small subunit [Candidatus Caldiarchaeum
          subterraneum]
          Length = 327

 Score = 40.4 bits (93), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 11/59 (18%)

Query: 23 RPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RPR L++   Q   VEA  N+ V        ++ + H+LF GPPG GKT  A   A++L
Sbjct: 16 RPRRLDDVVNQEQVVEALKNIVV--------SKNVPHMLFAGPPGTGKTATAHAFAQDL 66


>gi|308232597|ref|ZP_07416569.2| hypothetical protein TMAG_00615 [Mycobacterium tuberculosis
           SUMu001]
 gi|308371486|ref|ZP_07425111.2| hypothetical protein TMCG_01378 [Mycobacterium tuberculosis
           SUMu003]
 gi|308371531|ref|ZP_07425240.2| hypothetical protein TMDG_01826 [Mycobacterium tuberculosis
           SUMu004]
 gi|308372769|ref|ZP_07429773.2| hypothetical protein TMEG_00367 [Mycobacterium tuberculosis
           SUMu005]
 gi|308373853|ref|ZP_07433840.2| hypothetical protein TMFG_02105 [Mycobacterium tuberculosis
           SUMu006]
 gi|308375016|ref|ZP_07442388.2| hypothetical protein TMGG_01414 [Mycobacterium tuberculosis
           SUMu007]
 gi|308378501|ref|ZP_07482776.2| hypothetical protein TMIG_00224 [Mycobacterium tuberculosis
           SUMu009]
 gi|308379651|ref|ZP_07487011.2| hypothetical protein TMJG_01124 [Mycobacterium tuberculosis
           SUMu010]
 gi|308380845|ref|ZP_07491226.2| hypothetical protein TMKG_01118 [Mycobacterium tuberculosis
           SUMu011]
 gi|308213388|gb|EFO72787.1| hypothetical protein TMAG_00615 [Mycobacterium tuberculosis
           SUMu001]
 gi|308328641|gb|EFP17492.1| hypothetical protein TMCG_01378 [Mycobacterium tuberculosis
           SUMu003]
 gi|308336386|gb|EFP25237.1| hypothetical protein TMDG_01826 [Mycobacterium tuberculosis
           SUMu004]
 gi|308339983|gb|EFP28834.1| hypothetical protein TMEG_00367 [Mycobacterium tuberculosis
           SUMu005]
 gi|308343981|gb|EFP32832.1| hypothetical protein TMFG_02105 [Mycobacterium tuberculosis
           SUMu006]
 gi|308347766|gb|EFP36617.1| hypothetical protein TMGG_01414 [Mycobacterium tuberculosis
           SUMu007]
 gi|308352390|gb|EFP41241.1| hypothetical protein TMIG_00224 [Mycobacterium tuberculosis
           SUMu009]
 gi|308356340|gb|EFP45191.1| hypothetical protein TMJG_01124 [Mycobacterium tuberculosis
           SUMu010]
 gi|308360296|gb|EFP49147.1| hypothetical protein TMKG_01118 [Mycobacterium tuberculosis
           SUMu011]
          Length = 583

 Score = 40.4 bits (93), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 14/78 (17%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEE------FTGQVEACSNLKVFIEAAKARAEALDHV 57
           RE LL+   ++ D  I L R +   E         +V A   +KV        A+   H+
Sbjct: 289 RERLLAEAQAELDRQIGLTRVKNQIERYRAATLMARVRAAKGMKV--------AQPSKHM 340

Query: 58  LFVGPPGLGKTTLAQVVA 75
           +F GPPG GKTT+A+VVA
Sbjct: 341 IFTGPPGTGKTTIARVVA 358


>gi|283781331|ref|YP_003372086.1| ATP-dependent metalloprotease FtsH [Pirellula staleyi DSM 6068]
 gi|310946755|sp|D2QZ34|FTSH_PIRSD RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|283439784|gb|ADB18226.1| ATP-dependent metalloprotease FtsH [Pirellula staleyi DSM 6068]
          Length = 700

 Score = 40.4 bits (93), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 258 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSG 288


>gi|257093850|ref|YP_003167491.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257046374|gb|ACV35562.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 423

 Score = 40.4 bits (93), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+         
Sbjct: 112 AKSNILLIGPTGSGKTLLAQTLARMLDVPFVMADATTLTEAGYVGEDVENIIQKLLQKAD 171

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDEI ++S
Sbjct: 172 YDTEKAQRGIVYIDEIDKIS 191


>gi|296128488|ref|YP_003635738.1| ATP-dependent metalloprotease FtsH [Cellulomonas flavigena DSM
           20109]
 gi|296020303|gb|ADG73539.1| ATP-dependent metalloprotease FtsH [Cellulomonas flavigena DSM
           20109]
          Length = 682

 Score = 40.4 bits (93), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 42/80 (52%), Gaps = 7/80 (8%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFI-EAAKARA---EALDHVLFVGPPGLGK 67
           VS+E   ++      ++E    VE    +K F+ E +K +A   +    VL  GPPG GK
Sbjct: 161 VSKESPKVTFADVAGVDE---AVEELQEIKEFLSEPSKFQAVGAKIPKGVLLYGPPGTGK 217

Query: 68  TTLAQVVARELGVNFRSTSG 87
           T LA+ VA E GV F S SG
Sbjct: 218 TLLARAVAGEAGVPFYSISG 237


>gi|297563885|ref|YP_003682858.1| ATP-dependent metalloprotease FtsH [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296848334|gb|ADH70352.1| ATP-dependent metalloprotease FtsH [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 685

 Score = 40.4 bits (93), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL +GPPG GKT LA+ VA E GV F S SG
Sbjct: 203 VLLMGPPGTGKTLLARAVAGEAGVPFYSISG 233


>gi|224367557|ref|YP_002601720.1| ATP-dependent protease ATP-binding subunit ClpX [Desulfobacterium
           autotrophicum HRM2]
 gi|259491255|sp|C0QHJ8|CLPX_DESAH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|223690273|gb|ACN13556.1| ClpX1 [Desulfobacterium autotrophicum HRM2]
          Length = 418

 Score = 40.4 bits (93), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+            
Sbjct: 114 NILLIGPTGCGKTLLAQTLARFLDVPFALADATTLTEAGYVGEDVENIILSLVQNADYDI 173

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDE+ ++S
Sbjct: 174 EKAQRGIIYIDEVDKIS 190


>gi|222528930|ref|YP_002572812.1| ATP-dependent protease La [Caldicellulosiruptor bescii DSM 6725]
 gi|222455777|gb|ACM60039.1| ATP-dependent protease La [Caldicellulosiruptor bescii DSM 6725]
          Length = 775

 Score = 40.4 bits (93), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLA 71
           S E  DI+L++    E+  G  +    +  +I   K + +    +L  VGPPG+GKT++A
Sbjct: 309 SDEKIDINLVKKVLDEDHYGLTKVKERILEYIAVRKLKNDMKGPILCLVGPPGVGKTSIA 368

Query: 72  QVVARELGVNF 82
           + +AR L  N+
Sbjct: 369 KSIARALNRNY 379


>gi|195052158|ref|XP_001993245.1| GH13174 [Drosophila grimshawi]
 gi|193900304|gb|EDV99170.1| GH13174 [Drosophila grimshawi]
          Length = 990

 Score = 40.4 bits (93), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 18/26 (69%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFR 83
           L  GPPGLGKTTLA  +AR  G N R
Sbjct: 417 LLCGPPGLGKTTLAHTIARHAGYNVR 442


>gi|170744850|ref|YP_001773505.1| AAA family ATPase, CDC48 subfamily protein [Methylobacterium sp.
           4-46]
 gi|168199124|gb|ACA21071.1| AAA family ATPase, CDC48 subfamily [Methylobacterium sp. 4-46]
          Length = 757

 Score = 40.4 bits (93), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 8/71 (11%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRST-SGPVIAK-AGDLAALLTNLEDR------DVL 109
           L  GPPG GKT LA+ VARE   NF +T S  +++K  G+    ++ L  R       V+
Sbjct: 514 LLFGPPGTGKTLLAKAVAREASANFVATKSSDLLSKWYGESEQQVSRLFARARQVAPTVI 573

Query: 110 FIDEIHRLSII 120
           FIDEI  L+ +
Sbjct: 574 FIDEIDSLAPV 584



 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 8/75 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGD----LAALLTNLEDRD--V 108
           VL  GPPG GKT LA+ VA E    F   +GP I  ++ G+    L  + ++ +     +
Sbjct: 241 VLLYGPPGTGKTLLARAVANETEAQFFHIAGPEIMGSQYGESEQRLRQIFSDAQRNSPAI 300

Query: 109 LFIDEIHRLSIIVEE 123
           +FIDEI  ++   EE
Sbjct: 301 IFIDEIDSIAPKREE 315


>gi|19880131|gb|AAM00262.1|AF361489_1 spermatogenesis associated factor [Homo sapiens]
          Length = 893

 Score = 40.4 bits (93), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALL------TNLEDRDV 108
           VL  GPPG GKT +A+ VA E+G      +GP +I+K  G+  A L        L    +
Sbjct: 390 VLLYGPPGTGKTMIARAVANEVGAYVSVINGPEIISKFYGETEAKLRQIFAEATLRHPSI 449

Query: 109 LFIDEIHRLS 118
           +FIDE+  L 
Sbjct: 450 IFIDELDALC 459



 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 16/32 (50%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG  KT +A+ +A E G+NF +  GP
Sbjct: 664 VLLYGPPGCSKTMIAKALANESGLNFLAIKGP 695


>gi|86604737|ref|YP_473500.1| FtsH family metalloprotease [Synechococcus sp. JA-3-3Ab]
 gi|86553279|gb|ABC98237.1| metalloprotease, ATP-dependent, FtsH family [Synechococcus sp.
           JA-3-3Ab]
          Length = 628

 Score = 40.4 bits (93), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 203 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSG 233


>gi|73984474|ref|XP_856966.1| PREDICTED: similar to RuvB-like 1 (49-kDa TATA box-binding
          protein-interacting protein) (49 kDa TBP-interacting
          protein) (TIP49a) (Pontin 52) (Nuclear matrix protein
          238) (NMP 238) (54 kDa erythrocyte cytosolic protein)
          (ECP-54) (TIP60-associated protein 54-a... iso [Canis
          familiaris]
          Length = 450

 Score = 40.4 bits (93), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 31/62 (50%)

Query: 18 DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
          D S L  +      GQ  A     V +E  K++  A   VL  GPPG GKT LA  +A+E
Sbjct: 27 DESGLAKQAASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQE 86

Query: 78 LG 79
          LG
Sbjct: 87 LG 88


>gi|73984476|ref|XP_857008.1| PREDICTED: similar to RuvB-like 1 (49-kDa TATA box-binding
          protein-interacting protein) (49 kDa TBP-interacting
          protein) (TIP49a) (Pontin 52) (Nuclear matrix protein
          238) (NMP 238) (54 kDa erythrocyte cytosolic protein)
          (ECP-54) (TIP60-associated protein 54-a... iso [Canis
          familiaris]
          Length = 454

 Score = 40.4 bits (93), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 22/45 (48%), Positives = 27/45 (60%), Gaps = 3/45 (6%)

Query: 35 EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
          EAC    V +E  K++  A   VL  GPPG GKT LA  +A+ELG
Sbjct: 47 EACG---VIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88


>gi|72382133|ref|YP_291488.1| FtsH peptidase [Prochlorococcus marinus str. NATL2A]
 gi|72001983|gb|AAZ57785.1| membrane protease FtsH catalytic subunit [Prochlorococcus marinus
           str. NATL2A]
          Length = 640

 Score = 40.4 bits (93), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 217 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSG 247


>gi|66529882|ref|XP_397402.2| PREDICTED: katanin p60 ATPase-containing subunit A-like 1-like
           [Apis mellifera]
          Length = 506

 Score = 40.4 bits (93), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108
           VL VGPPG GKT LA+ VA E G  F + S   +     G+   L      +        
Sbjct: 262 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPST 321

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 322 IFIDEIDSL 330


>gi|88808601|ref|ZP_01124111.1| hypothetical protein WH7805_02887 [Synechococcus sp. WH 7805]
 gi|88787589|gb|EAR18746.1| hypothetical protein WH7805_02887 [Synechococcus sp. WH 7805]
          Length = 637

 Score = 40.4 bits (93), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 217 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSG 247


>gi|91977363|ref|YP_570022.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodopseudomonas
           palustris BisB5]
 gi|123762673|sp|Q135W8|CLPX_RHOPS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|91683819|gb|ABE40121.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Rhodopseudomonas palustris BisB5]
          Length = 424

 Score = 40.4 bits (93), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+         
Sbjct: 110 AKSNILLIGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 169

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDEI ++S
Sbjct: 170 YNVERAQRGIVYIDEIDKIS 189


>gi|326927944|ref|XP_003210147.1| PREDICTED: ruvB-like 1-like [Meleagris gallopavo]
          Length = 456

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 22/45 (48%), Positives = 27/45 (60%), Gaps = 3/45 (6%)

Query: 35 EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
          EAC    V +E  K++  A   VL  GPPG GKT LA  +A+ELG
Sbjct: 47 EACG---VIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88


>gi|326427696|gb|EGD73266.1| RuvB-like helicase 1 [Salpingoeca sp. ATCC 50818]
          Length = 455

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 28/50 (56%)

Query: 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
            GQ +A     + ++  KA+  A   VLF GPPG GKT LA  ++ ELG
Sbjct: 39 LVGQDQAREAASIVVDLIKAKKMAGRAVLFAGPPGTGKTALALAISSELG 88


>gi|323509483|dbj|BAJ77634.1| cgd3_1450 [Cryptosporidium parvum]
          Length = 327

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 5/60 (8%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          I   RP+ L+E  G  E  + LKV      A+   + ++L  GPPG GKTT    +A E+
Sbjct: 7  IEKYRPKILDEMVGNEEVLTRLKVL-----AKHGNMPNLLLSGPPGTGKTTSIHCLASEM 61


>gi|323450958|gb|EGB06837.1| hypothetical protein AURANDRAFT_59175 [Aureococcus anophagefferens]
          Length = 479

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 45/89 (50%), Gaps = 11/89 (12%)

Query: 34  VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP----- 88
           V+  SN + F    K  A++   VL  GPPG GKT LA+ VA E GV F S SG      
Sbjct: 47  VDFLSNPEKFT---KVGAQSPRGVLLEGPPGTGKTLLARAVAGEAGVPFISASGSEFVEM 103

Query: 89  -VIAKAGDLAALLTNLEDRD--VLFIDEI 114
            V   A  + +L  + +     ++FIDEI
Sbjct: 104 FVGVGASRIRSLFADAKKNAPCIIFIDEI 132


>gi|320164674|gb|EFW41573.1| peroxisome assembly factor-2 [Capsaspora owczarzaki ATCC 30864]
          Length = 1171

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT LA+ VA E  +NF S  GP
Sbjct: 916 LLLYGPPGTGKTLLAKAVATECSLNFISVKGP 947


>gi|309799588|ref|ZP_07693814.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           infantis SK1302]
 gi|308116776|gb|EFO54226.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           infantis SK1302]
          Length = 268

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +AR L V F       + +AG    D+  +L  L        
Sbjct: 106 NILMIGPTGSGKTFLAQTLARSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNI 165

Query: 104 --EDRDVLFIDEIHRLS 118
              +R ++++DEI +++
Sbjct: 166 ERAERGIIYVDEIDKIA 182


>gi|299751623|ref|XP_001830385.2| peroxisome biogenesis factor 1 [Coprinopsis cinerea okayama7#130]
 gi|298409459|gb|EAU91532.2| peroxisome biogenesis factor 1 [Coprinopsis cinerea okayama7#130]
          Length = 962

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  G PG GKT LA  VA+E G+NF S  GP I
Sbjct: 647 LLLYGYPGCGKTLLASAVAKECGLNFISVKGPEI 680


>gi|296226000|ref|XP_002758742.1| PREDICTED: ruvB-like 1 isoform 2 [Callithrix jacchus]
          Length = 386

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 31/62 (50%)

Query: 18 DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
          D S L  +      GQ  A     V +E  K++  A   VL  GPPG GKT LA  +A+E
Sbjct: 27 DESGLAKQAASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQE 86

Query: 78 LG 79
          LG
Sbjct: 87 LG 88


>gi|295100805|emb|CBK98350.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Faecalibacterium prausnitzii L2-6]
          Length = 443

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDV 108
           +VL +GP G+GKT LAQ +A+ LGV F       + +AG +   + N+        D DV
Sbjct: 133 NVLLLGPSGVGKTLLAQTLAKMLGVPFAIADATTLTEAGYVGEDVENILLKLIQAADFDV 192

Query: 109 -------LFIDEIHRLS 118
                  ++IDEI +++
Sbjct: 193 QKAQIGIIYIDEIDKIT 209


>gi|257388135|ref|YP_003177908.1| ATPase AAA [Halomicrobium mukohataei DSM 12286]
 gi|257170442|gb|ACV48201.1| AAA family ATPase, CDC48 subfamily [Halomicrobium mukohataei DSM
           12286]
          Length = 757

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 23/34 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL  GPPG GKT +A+ VA E+  +F + SGP I
Sbjct: 230 VLLHGPPGTGKTLMAKAVANEIDAHFTTISGPEI 263



 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 20/37 (54%), Positives = 22/37 (59%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +A   VL  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 498 QAAKGVLLYGPPGTGKTLLAKAVANEAQSNFISIKGP 534


>gi|224066125|ref|XP_002198322.1| PREDICTED: RuvB-like 1 [Taeniopygia guttata]
          Length = 456

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 22/45 (48%), Positives = 27/45 (60%), Gaps = 3/45 (6%)

Query: 35 EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
          EAC    V +E  K++  A   VL  GPPG GKT LA  +A+ELG
Sbjct: 47 EACG---VIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88


>gi|221131979|ref|XP_002167314.1| PREDICTED: similar to ClpX caseinolytic protease X homolog [Hydra
           magnipapillata]
          Length = 683

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 14/79 (17%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTN--------- 102
           ++L +GP G GKT LAQ +A+ L V F       + +AG    D+ +++T          
Sbjct: 349 NILLLGPTGSGKTLLAQTIAKCLDVPFAMCDCTSLTQAGYVGEDIESVITKLLQEANYNV 408

Query: 103 -LEDRDVLFIDEIHRLSII 120
            L  + ++F+DE+ ++S +
Sbjct: 409 ELAQQGIIFLDEVDKISCV 427


>gi|152980700|ref|YP_001353222.1| ATP-dependent protease ATP-binding subunit ClpX [Janthinobacterium
           sp. Marseille]
 gi|166214779|sp|A6SY75|CLPX_JANMA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|151280777|gb|ABR89187.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Janthinobacterium sp. Marseille]
          Length = 422

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE 104
           A  ++L VGP G GKT LAQ +AR L V F       + +AG +          LL N  
Sbjct: 112 AKSNILLVGPTGSGKTLLAQTLARTLDVPFVIADATTLTEAGYVGEDVENIIQKLLQNCN 171

Query: 105 ------DRDVLFIDEIHRLS 118
                  + +++IDEI ++S
Sbjct: 172 YEVERAQKGIVYIDEIDKIS 191


>gi|148242501|ref|YP_001227658.1| cell division protein FtsH [Synechococcus sp. RCC307]
 gi|147850811|emb|CAK28305.1| Cell division protein FtsH [Synechococcus sp. RCC307]
          Length = 639

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 216 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSG 246


>gi|153000123|ref|YP_001365804.1| ATP-dependent protease ATP-binding subunit ClpX [Shewanella baltica
           OS185]
 gi|166215202|sp|A6WLQ2|CLPX_SHEB8 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|151364741|gb|ABS07741.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella
           baltica OS185]
          Length = 426

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LA+ +AR L V F       + +AG +   + N+            
Sbjct: 115 NILLIGPTGSGKTLLAETLARSLNVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 174

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 175 EKAQRGIVYIDEIDKIS 191


>gi|121535064|ref|ZP_01666881.1| ATP-dependent metalloprotease FtsH [Thermosinus carboxydivorans
           Nor1]
 gi|121306314|gb|EAX47239.1| ATP-dependent metalloprotease FtsH [Thermosinus carboxydivorans
           Nor1]
          Length = 651

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 34/69 (49%), Gaps = 7/69 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  EA   L+  +E  K   +  D        VL  GPPG GKT LA+ VA E 
Sbjct: 161 TFKDVAGADEAKQELEEVVEFLKHPKKFNDLGARIPKGVLLFGPPGTGKTLLARAVAGEA 220

Query: 79  GVNFRSTSG 87
           GV F S SG
Sbjct: 221 GVPFFSISG 229


>gi|126173839|ref|YP_001049988.1| ATP-dependent protease ATP-binding subunit ClpX [Shewanella baltica
           OS155]
 gi|160874745|ref|YP_001554061.1| ATP-dependent protease ATP-binding subunit ClpX [Shewanella baltica
           OS195]
 gi|217973909|ref|YP_002358660.1| ATP-dependent protease ATP-binding subunit ClpX [Shewanella baltica
           OS223]
 gi|304409712|ref|ZP_07391332.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella
           baltica OS183]
 gi|307304068|ref|ZP_07583821.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella
           baltica BA175]
 gi|166215201|sp|A3D306|CLPX_SHEB5 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|189044150|sp|A9KWH8|CLPX_SHEB9 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|254763862|sp|B8E5E8|CLPX_SHEB2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|125997044|gb|ABN61119.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella
           baltica OS155]
 gi|160860267|gb|ABX48801.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella
           baltica OS195]
 gi|217499044|gb|ACK47237.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella
           baltica OS223]
 gi|304352230|gb|EFM16628.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella
           baltica OS183]
 gi|306912966|gb|EFN43389.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella
           baltica BA175]
 gi|315266987|gb|ADT93840.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella
           baltica OS678]
          Length = 426

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LA+ +AR L V F       + +AG +   + N+            
Sbjct: 115 NILLIGPTGSGKTLLAETLARSLNVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 174

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 175 EKAQRGIVYIDEIDKIS 191


>gi|157876189|ref|XP_001686454.1| ruvb-like 1 DNA helicase [Leishmania major strain Friedlin]
 gi|68129528|emb|CAJ08071.1| putative ruvb-like 1 DNA helicase [Leishmania major strain
          Friedlin]
          Length = 459

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 30/50 (60%)

Query: 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
          F GQ +A     + +E  +++  A   +LF GPPG GKT LA  +A+ELG
Sbjct: 42 FVGQEKAREAAGIAVELIRSKKMAGRALLFAGPPGTGKTALALGIAKELG 91


>gi|60825511|gb|AAX36722.1| RuvB-like 1 [synthetic construct]
          Length = 457

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 22/45 (48%), Positives = 27/45 (60%), Gaps = 3/45 (6%)

Query: 35 EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
          EAC    V +E  K++  A   VL  GPPG GKT LA  +A+ELG
Sbjct: 47 EACG---VIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88


>gi|33240371|ref|NP_875313.1| cell division protein FtsH [Prochlorococcus marinus subsp. marinus
           str. CCMP1375]
 gi|33237898|gb|AAP99965.1| Cell division protein FtsH [Prochlorococcus marinus subsp. marinus
           str. CCMP1375]
          Length = 638

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 217 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSG 247


>gi|23097534|ref|NP_691000.1| cell division protein [Oceanobacillus iheyensis HTE831]
 gi|22775757|dbj|BAC12035.1| cell division protein (general stress protein) [Oceanobacillus
           iheyensis HTE831]
          Length = 675

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E G  F S SG       V   A  +  L  N +     +
Sbjct: 199 VLLVGPPGTGKTLLARAVAGEAGTPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 258

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 259 IFIDEI 264


>gi|154247519|ref|YP_001418477.1| ATP-dependent protease ATP-binding subunit ClpX [Xanthobacter
           autotrophicus Py2]
 gi|238686732|sp|A7ILC7|CLPX_XANP2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|154161604|gb|ABS68820.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Xanthobacter
           autotrophicus Py2]
          Length = 422

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+         
Sbjct: 110 AKSNILLIGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 169

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDEI ++S
Sbjct: 170 YNVERAQRGIVYIDEIDKIS 189


>gi|67926050|ref|ZP_00519307.1| Peptidase M41, FtsH [Crocosphaera watsonii WH 8501]
 gi|67852105|gb|EAM47607.1| Peptidase M41, FtsH [Crocosphaera watsonii WH 8501]
          Length = 503

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 209 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 239


>gi|163845899|ref|YP_001633943.1| ATP-dependent protease La [Chloroflexus aurantiacus J-10-fl]
 gi|222523621|ref|YP_002568091.1| ATP-dependent protease La [Chloroflexus sp. Y-400-fl]
 gi|163667188|gb|ABY33554.1| ATP-dependent protease La [Chloroflexus aurantiacus J-10-fl]
 gi|222447500|gb|ACM51766.1| ATP-dependent protease La [Chloroflexus sp. Y-400-fl]
          Length = 790

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 95/239 (39%), Gaps = 50/239 (20%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           + FVGPPG+GKT+L   +AR LG  F R   G V  +A              G +   L+
Sbjct: 361 LCFVGPPGVGKTSLGASIARALGRKFVRVALGGVRDEAEIRGHRRTYIGALPGRIIQGLS 420

Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYP----AMEDFQLDLMVGEGPSARSVK 148
             +  + VL +DE+ +LSI  +        E+L P    A  D  LD           V 
Sbjct: 421 RAKSNNPVLLLDEVDKLSIGFQGDPAAALLEVLDPEQNVAFVDRYLD-----------VP 469

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAA 208
            +LS+   +    R   +   L DR  +     + E E L+ I +R        +     
Sbjct: 470 FDLSKVLFVCTANRADTIPPALLDRMELLELAGYTEQEKLE-IARR-------YLIPRQR 521

Query: 209 CEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA---DAALLRLAIDKMGFDQLD 264
            E  M +RG       L R +R++   A  + + R I         RLA ++   DQ+D
Sbjct: 522 REQGMTNRGPELTTAALQRLIREYTHEAGVRDLERRIGAIYRKMATRLASEQTLPDQVD 580


>gi|327265956|ref|XP_003217773.1| PREDICTED: ruvB-like 1-like [Anolis carolinensis]
          Length = 456

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 22/45 (48%), Positives = 27/45 (60%), Gaps = 3/45 (6%)

Query: 35 EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
          EAC    V +E  K++  A   VL  GPPG GKT LA  +A+ELG
Sbjct: 47 EACG---VIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88


>gi|299116532|emb|CBN74720.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 382

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 6/62 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81
           RP +LEE     +    L+  I + K     L H+LF GPPG GKT+     A++L G +
Sbjct: 70  RPSSLEELVAHEDIVGILQKLIASNK-----LPHLLFYGPPGTGKTSTILACAKKLYGAD 124

Query: 82  FR 83
           F+
Sbjct: 125 FK 126


>gi|297674298|ref|XP_002815168.1| PREDICTED: spermatogenesis-associated protein 5-like isoform 2
           [Pongo abelii]
          Length = 789

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALL------TNLEDRDV 108
           VL  GPPG GKT +A+ VA E+G      +GP +I+K  G+  A L        L    +
Sbjct: 389 VLLYGPPGTGKTMIARAVANEVGAYVSVINGPEIISKFYGETEAKLRQIFAEATLRHPSI 448

Query: 109 LFIDEIHRLS 118
           +FIDE+  L 
Sbjct: 449 IFIDELDALC 458



 Score = 38.5 bits (88), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 16/32 (50%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG  KT +A+ +A E G+NF +  GP
Sbjct: 663 VLLYGPPGCSKTMIAKALANESGLNFLAIKGP 694


>gi|261494049|ref|ZP_05990552.1| S14 family endopeptidase ClpX [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261496190|ref|ZP_05992596.1| S14 family endopeptidase ClpX [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261308142|gb|EEY09439.1| S14 family endopeptidase ClpX [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261310215|gb|EEY11415.1| S14 family endopeptidase ClpX [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 415

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LA+ +AR L V F       + +AG +   + N+            
Sbjct: 118 NILLIGPTGSGKTLLAETLARRLNVPFAVADATTLTQAGYVGEDVENVIQKLLMKCDFEA 177

Query: 104 --EDRDVLFIDEIHRLS 118
              +R ++FIDEI +++
Sbjct: 178 EQAERGIVFIDEIDKIT 194


>gi|269925293|ref|YP_003321916.1| ATP-dependent metalloprotease FtsH [Thermobaculum terrenum ATCC
           BAA-798]
 gi|310946768|sp|D1CDT8|FTSH_THET1 RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|269788953|gb|ACZ41094.1| ATP-dependent metalloprotease FtsH [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 646

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL +GPPG GKT LA+ VA E GV F S SG
Sbjct: 233 VLLIGPPGTGKTLLARAVAGEAGVPFFSMSG 263


>gi|224058731|ref|XP_002299621.1| predicted protein [Populus trichocarpa]
 gi|222846879|gb|EEE84426.1| predicted protein [Populus trichocarpa]
          Length = 526

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLED------RDV 108
           VL  GPPG GKT LA+ VA E G  F + S   +A    G+   ++  L D         
Sbjct: 278 VLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPST 337

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 338 IFIDEIDSL 346


>gi|221633008|ref|YP_002522233.1| ATP-dependent protease La [Thermomicrobium roseum DSM 5159]
 gi|221156805|gb|ACM05932.1| ATP-dependent protease La [Thermomicrobium roseum DSM 5159]
          Length = 832

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 18/30 (60%), Positives = 22/30 (73%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTS 86
           + FVGPPG+GKT+LAQ +AR LG  F   S
Sbjct: 383 LCFVGPPGVGKTSLAQSIARALGRAFTRMS 412


>gi|215448213|ref|ZP_03434965.1| hypothetical protein MtubT_20554 [Mycobacterium tuberculosis T85]
          Length = 533

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 14/78 (17%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEE------FTGQVEACSNLKVFIEAAKARAEALDHV 57
           RE LL+   ++ D  I L R +   E         +V A   +KV        A+   H+
Sbjct: 275 RERLLAEAQAELDRQIGLTRVKNQIERYRAATLMARVRAAKGMKV--------AQPSKHM 326

Query: 58  LFVGPPGLGKTTLAQVVA 75
           +F GPPG GKTT+A+VVA
Sbjct: 327 IFTGPPGTGKTTIARVVA 344


>gi|152978445|ref|YP_001344074.1| ATP-dependent protease ATP-binding subunit [Actinobacillus
           succinogenes 130Z]
 gi|171704241|sp|A6VME2|CLPX_ACTSZ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|150840168|gb|ABR74139.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Actinobacillus succinogenes 130Z]
          Length = 411

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104
           +VL +GP G GKT LAQ +AR L V F       + +AG +          LL N +   
Sbjct: 111 NVLLIGPTGSGKTLLAQTLARMLNVPFAMADATTLTEAGYVGEDVENIIQKLLQNCDYDT 170

Query: 105 ---DRDVLFIDEIHRLS 118
              ++ +++IDEI +++
Sbjct: 171 EKAEQGIIYIDEIDKIT 187


>gi|123968339|ref|YP_001009197.1| FtsH ATP-dependent protease-like protein [Prochlorococcus marinus
           str. AS9601]
 gi|123198449|gb|ABM70090.1| FtsH ATP-dependent protease-like protein [Prochlorococcus marinus
           str. AS9601]
          Length = 637

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 217 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSG 247


>gi|108804640|ref|YP_644577.1| ATP-dependent metalloprotease FtsH [Rubrobacter xylanophilus DSM
           9941]
 gi|123069043|sp|Q1AV13|FTSH_RUBXD RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|108765883|gb|ABG04765.1| ATP-dependent metalloprotease FtsH [Rubrobacter xylanophilus DSM
           9941]
          Length = 651

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 31/58 (53%), Gaps = 4/58 (6%)

Query: 34  VEACSNLKVFIEAA----KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           V+  + +K F+E      K  A      L VGPPG GKT LA+ VA E GV F S SG
Sbjct: 198 VQELTEIKEFLENPQKFQKLGARIPKGALLVGPPGTGKTLLARAVAGEAGVPFFSISG 255


>gi|41615216|ref|NP_963714.1| replication factor C large subunit [Nanoarchaeum equitans Kin4-M]
 gi|42559421|sp|P60373|RFCL_NANEQ RecName: Full=Replication factor C large subunit; Short=RFC large
          subunit; AltName: Full=Clamp loader large subunit
 gi|40068940|gb|AAR39275.1| NEQ430 [Nanoarchaeum equitans Kin4-M]
          Length = 430

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
          RP+TL+E   Q +A   L+ ++   K + +    +L  GPPG GKT+    +A ELG
Sbjct: 38 RPKTLDEVENQEQAKQILRDYVINYKKKYKG-KALLLYGPPGTGKTSSVYALANELG 93


>gi|26553595|ref|NP_757529.1| recombination factor protein RarA [Mycoplasma penetrans HF-2]
 gi|26453601|dbj|BAC43933.1| predicted ATPase [Mycoplasma penetrans HF-2]
          Length = 409

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAAL-LTNLEDRDVLFIDEIH 115
           +LF G PG+GK+   Q + ++L  NF   +     K   L  L L   +++ ++ I+EIH
Sbjct: 42  ILFFGNPGVGKSASIQFILKKLNKNFYYFNSTTNNKNDLLEILELATEDNKPIIIIEEIH 101

Query: 116 RLS 118
           RL+
Sbjct: 102 RLN 104


>gi|322372510|ref|ZP_08047046.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           sp. C150]
 gi|321277552|gb|EFX54621.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           sp. C150]
          Length = 408

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +AR L V F       + +AG    D+  +L  L        
Sbjct: 112 NILMIGPTGSGKTFLAQTLARSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADFNI 171

Query: 104 --EDRDVLFIDEIHRLS 118
              +R ++++DEI +++
Sbjct: 172 ERAERGIIYVDEIDKIA 188


>gi|300311894|ref|YP_003775986.1| ATP-dependent protease ATP-binding specificity subunit
           [Herbaspirillum seropedicae SmR1]
 gi|300074679|gb|ADJ64078.1| ATP-dependent protease (ATP-binding specificity subunit) protein
           [Herbaspirillum seropedicae SmR1]
          Length = 421

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE 104
           A  ++L VGP G GKT LAQ +AR L V F       + +AG +          LL N  
Sbjct: 112 AKSNILLVGPTGSGKTLLAQTLARMLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCN 171

Query: 105 ------DRDVLFIDEIHRLS 118
                  + +++IDEI ++S
Sbjct: 172 YEVEKAQKGIVYIDEIDKIS 191


>gi|282915794|ref|ZP_06323563.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus subsp.
           aureus D139]
 gi|282320332|gb|EFB50673.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus subsp.
           aureus D139]
          Length = 565

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 6/92 (6%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           + RP++ E+  GQ      L+  I   K ++ A    +F GP G GKT++A+V A+ +  
Sbjct: 9   MYRPQSFEDVVGQEHVTKTLRNAISKEK-QSHAY---IFSGPRGTGKTSIAKVFAKAINC 64

Query: 81  NFRSTSGPVIAKAGDLAALLTNLEDRDVLFID 112
            F ST G    +   +   +T   + DV+ ID
Sbjct: 65  -FNSTDGEPCNECH-ICKGITQGTNSDVIEID 94


>gi|198474425|ref|XP_001356680.2| GA17299 [Drosophila pseudoobscura pseudoobscura]
 gi|198138387|gb|EAL33745.2| GA17299 [Drosophila pseudoobscura pseudoobscura]
          Length = 1002

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 18/26 (69%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFR 83
           L  GPPGLGKTTLA  +AR  G N R
Sbjct: 425 LLCGPPGLGKTTLAHTIARHAGYNVR 450


>gi|189235677|ref|XP_971331.2| PREDICTED: similar to Peroxisomal biogenesis factor 6 [Tribolium
           castaneum]
          Length = 444

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 17/32 (53%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT +A+ VA E G+ F S  GP
Sbjct: 202 ILLYGPPGTGKTLIAKAVATECGLCFLSVKGP 233


>gi|164655783|ref|XP_001729020.1| hypothetical protein MGL_3808 [Malassezia globosa CBS 7966]
 gi|159102909|gb|EDP41806.1| hypothetical protein MGL_3808 [Malassezia globosa CBS 7966]
          Length = 1228

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 4/48 (8%)

Query: 41  KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           ++F +  K R+     VL  GPPG GKT LA+ VA    +NF S  GP
Sbjct: 844 ELFADGVKKRS----GVLLYGPPGTGKTLLAKAVATTCSLNFFSVKGP 887


>gi|149238059|ref|XP_001524906.1| ribosome biogenesis ATPase RIX7 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146451503|gb|EDK45759.1| ribosome biogenesis ATPase RIX7 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 832

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL--EDRDV---- 108
           VL  GPPG GKTT+A  +A EL V F + S P I    +G+    L +L  E + V    
Sbjct: 232 VLLYGPPGCGKTTVANALAGELKVPFINISAPSIVSGMSGESEKKLRDLFEEAKSVAPCI 291

Query: 109 LFIDEIHRLS 118
           +F+DEI  ++
Sbjct: 292 IFMDEIDAIT 301



 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 561 VLMWGPPGCGKTLLAKAVANESRANFISIKGP 592


>gi|134097009|ref|YP_001102670.1| putative cell division protein [Saccharopolyspora erythraea NRRL
           2338]
 gi|291006245|ref|ZP_06564218.1| putative cell division protein [Saccharopolyspora erythraea NRRL
           2338]
 gi|133909632|emb|CAL99744.1| putative cell division protein [Saccharopolyspora erythraea NRRL
           2338]
          Length = 795

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 32/59 (54%), Gaps = 6/59 (10%)

Query: 34  VEACSNLKVFIEAAKARAEAL-----DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VE    +K F++    R +AL       VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 160 VEELHEIKDFLQNP-GRYQALGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISG 217


>gi|126696141|ref|YP_001091027.1| FtsH ATP-dependent protease-like protein [Prochlorococcus marinus
           str. MIT 9301]
 gi|126543184|gb|ABO17426.1| FtsH ATP-dependent protease-like protein [Prochlorococcus marinus
           str. MIT 9301]
          Length = 637

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 217 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSG 247


>gi|91773629|ref|YP_566321.1| AAA family ATPase, CDC48 subfamily protein [Methanococcoides
           burtonii DSM 6242]
 gi|91712644|gb|ABE52571.1| CDC48, AAA family ATPase [Methanococcoides burtonii DSM 6242]
          Length = 736

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNL------EDRDV 108
           VL  GPPG GKT +A+ VA E   NF   SGP +I+K  G+    L  +      E   +
Sbjct: 213 VLLYGPPGTGKTMIAKAVASESEANFIPISGPEIISKYYGESEQKLREIFEEAEKEGPTI 272

Query: 109 LFIDEIHRLS 118
           +FIDE+  ++
Sbjct: 273 IFIDELDSIA 282



 Score = 39.7 bits (91), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 485 ILLFGPPGTGKTLLAKAVANESEANFISIKGP 516


>gi|87124413|ref|ZP_01080262.1| FtsH ATP-dependent protease-like protein [Synechococcus sp. RS9917]
 gi|86167985|gb|EAQ69243.1| FtsH ATP-dependent protease-like protein [Synechococcus sp. RS9917]
          Length = 638

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 217 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSG 247


>gi|150017878|ref|YP_001310132.1| ATP-dependent metalloprotease FtsH [Clostridium beijerinckii NCIMB
           8052]
 gi|149904343|gb|ABR35176.1| ATP-dependent metalloprotease FtsH [Clostridium beijerinckii NCIMB
           8052]
          Length = 627

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 48/104 (46%), Gaps = 15/104 (14%)

Query: 26  TLEEFTGQVEACSNLKVFIE-------AAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           + ++  GQ EA  +LK  ++         K  A+     L VGPPG GKT LA+ VA E 
Sbjct: 178 SFKDVAGQEEAKESLKEIVDFLHKPERYTKIGAKLPKGALLVGPPGTGKTLLAKAVAGEA 237

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEI 114
            V F S SG       V   A  +  L    E +   ++FIDEI
Sbjct: 238 KVPFFSLSGSGFVEMFVGVGASRVRDLFAQAEKQAPCIIFIDEI 281


>gi|325968403|ref|YP_004244595.1| ATPase AAA [Vulcanisaeta moutnovskia 768-28]
 gi|323707606|gb|ADY01093.1| AAA family ATPase [Vulcanisaeta moutnovskia 768-28]
          Length = 885

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 8/75 (10%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD--LAALLTNLED--RD 107
           E +  +L  GPPG+GKT +A+  A  L  NF   +G  +A+ G    AA++ ++ +  RD
Sbjct: 652 EPIHGILLFGPPGVGKTLVAKATANMLKANFIELNGAELARVGPERAAAVVKDVFNMARD 711

Query: 108 ----VLFIDEIHRLS 118
               ++FIDEI  ++
Sbjct: 712 NTPAIIFIDEIDSVA 726


>gi|322495155|emb|CBZ30459.1| putative ruvb-like 1 DNA helicase [Leishmania mexicana
          MHOM/GT/2001/U1103]
          Length = 459

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 30/50 (60%)

Query: 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
          F GQ +A     + +E  +++  A   +LF GPPG GKT LA  +A+ELG
Sbjct: 42 FVGQEKAREAAGIAVELIRSKKMAGRALLFAGPPGTGKTALALGIAKELG 91


>gi|321457088|gb|EFX68181.1| hypothetical protein DAPPUDRAFT_114746 [Daphnia pulex]
          Length = 699

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E  ++F S  GP
Sbjct: 551 VLLYGPPGTGKTLLAKAVATECNLHFLSVKGP 582


>gi|297670091|ref|XP_002813209.1| PREDICTED: ruvB-like 1-like [Pongo abelii]
          Length = 478

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 31/62 (50%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           D S L  +      GQ  A     V +E  K++  A   VL  GPPG GKT LA  +A+E
Sbjct: 49  DESGLAKQAASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQE 108

Query: 78  LG 79
           LG
Sbjct: 109 LG 110


>gi|290891315|ref|ZP_06554376.1| hypothetical protein AWRIB429_1766 [Oenococcus oeni AWRIB429]
 gi|290478961|gb|EFD87624.1| hypothetical protein AWRIB429_1766 [Oenococcus oeni AWRIB429]
          Length = 421

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 26/126 (20%)

Query: 25  RTLEEFT-GQVEACSNLKVFIEAAKARA-EALDH----------VLFVGPPGLGKTTLAQ 72
           + L E+  GQ EA   L V +     R  E+L H          +L +GP G GKT LAQ
Sbjct: 72  KHLNEYVIGQEEAKKTLAVAVYNHYKRVNESLQHKSDVELQKSNILLIGPTGSGKTYLAQ 131

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNL--------------EDRDVLFIDEIHRLS 118
            +A+ L V F       + +AG +   + N+                R +++IDEI +++
Sbjct: 132 SLAKMLDVPFAIADATTLTEAGYVGEDVENVVLKLLQAADFDVEKAQRGIIYIDEIDKIA 191

Query: 119 IIVEEI 124
              E +
Sbjct: 192 KKSENV 197


>gi|283781755|ref|YP_003372510.1| ATPase associated with various cellular activities AAA_3 [Pirellula
           staleyi DSM 6068]
 gi|283440208|gb|ADB18650.1| ATPase associated with various cellular activities AAA_3 [Pirellula
           staleyi DSM 6068]
          Length = 328

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 79/188 (42%), Gaps = 34/188 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKAGDLAALLTNLEDR-------- 106
           H+LF   PGLGKTTLA+ +A  +G  F R    P +  +      L N + R        
Sbjct: 56  HLLFDDLPGLGKTTLAKALATAVGGRFARVQCTPDLLPSDITGFNLFNQQSREFEFVSGP 115

Query: 107 ---DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
              DVL  DEI+R +   +  L+ AM + Q+ +        +S K++ + F +       
Sbjct: 116 VFSDVLLADEINRATPRTQSALFEAMAERQVTI------DNQSRKLSDTFFVIATQNPVE 169

Query: 164 GLLTNPLQ----DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTP 219
                PL     DRF + +R+ +           RG++L  LA     + +   R  G+P
Sbjct: 170 SHGAYPLPEAQLDRFAMKLRIGYPS---------RGSELAMLAAQVGVSSD---RPAGSP 217

Query: 220 RIAGRLLR 227
            +    LR
Sbjct: 218 VVDPSQLR 225


>gi|262372887|ref|ZP_06066166.1| methanol dehydrogenase regulatory protein [Acinetobacter junii
           SH205]
 gi|262312912|gb|EEY93997.1| methanol dehydrogenase regulatory protein [Acinetobacter junii
           SH205]
          Length = 319

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 12/88 (13%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAAL-LTNLEDR-------- 106
           HVLF   PGLGKTTLA  +AR  G++F+         A D+  + + N ++         
Sbjct: 60  HVLFEDLPGLGKTTLASALARLAGLHFQRIQFTNDMLASDVIGINIFNQKEHIFEFKKGP 119

Query: 107 ---DVLFIDEIHRLSIIVEEILYPAMED 131
               +L  DEI+R S   +  L  AME+
Sbjct: 120 VFTQILLADEINRCSPKTQSALLEAMEE 147


>gi|225713814|gb|ACO12753.1| Replication factor C subunit 2 [Lepeophtheirus salmonis]
          Length = 325

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 6/66 (9%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE- 77
          I   RP+T ++  G  E  S L  F     A      +++  GPPG+GKTT    +AR  
Sbjct: 13 IEKYRPKTFDDIVGNSETVSRLTTFAHDGNA-----PNIIISGPPGVGKTTTILCLARAL 67

Query: 78 LGVNFR 83
          LG +F+
Sbjct: 68 LGSSFK 73


>gi|224011257|ref|XP_002295403.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|209583434|gb|ACI64120.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 208

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 66/147 (44%), Gaps = 14/147 (9%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAK-AGDLAALLTNL----EDRDVL 109
           +L  GPPG GKT LA+ VA E    + S  GP  +++K  G+  A +  L    +   V+
Sbjct: 1   ILLHGPPGCGKTKLAKAVAGEAQAAYLSV-GPSDILSKYVGESEASVRGLFLEGDKCAVI 59

Query: 110 FIDEIHRL--SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           F DEI  L  S + E++  P           G+  +A   +    R  ++AAT R     
Sbjct: 60  FFDEIDALGRSRVDEDVQTPTRSSSS----AGKQGNAVKPRQPKPRVIVVAATNRPEDCD 115

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQR 194
             L  RF   + +     +D K I++R
Sbjct: 116 PALLRRFACRVLVGLPSRKDRKKIIKR 142


>gi|157413172|ref|YP_001484038.1| ATP-dependent metalloprotease FtsH [Prochlorococcus marinus str.
           MIT 9215]
 gi|254526354|ref|ZP_05138406.1| ATP-dependent metallopeptidase HflB subfamily protein
           [Prochlorococcus marinus str. MIT 9202]
 gi|157387747|gb|ABV50452.1| ATP-dependent metalloprotease FtsH [Prochlorococcus marinus str.
           MIT 9215]
 gi|221537778|gb|EEE40231.1| ATP-dependent metallopeptidase HflB subfamily protein
           [Prochlorococcus marinus str. MIT 9202]
          Length = 637

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 217 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSG 247


>gi|254361749|ref|ZP_04977884.1| S14 family endopeptidase ClpX [Mannheimia haemolytica PHL213]
 gi|153093284|gb|EDN74280.1| S14 family endopeptidase ClpX [Mannheimia haemolytica PHL213]
          Length = 415

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LA+ +AR L V F       + +AG +   + N+            
Sbjct: 118 NILLIGPTGSGKTLLAETLARRLNVPFAVADATTLTQAGYVGEDVENVIQKLLMKCDFEA 177

Query: 104 --EDRDVLFIDEIHRLS 118
              +R ++FIDEI +++
Sbjct: 178 EQAERGIVFIDEIDKIT 194


>gi|120599413|ref|YP_963987.1| ATP-dependent protease ATP-binding subunit ClpX [Shewanella sp.
           W3-18-1]
 gi|146292591|ref|YP_001183015.1| ATP-dependent protease ATP-binding subunit ClpX [Shewanella
           putrefaciens CN-32]
 gi|166215204|sp|A4Y5I3|CLPX_SHEPC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|166215206|sp|A1RL88|CLPX_SHESW RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|120559506|gb|ABM25433.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella
           sp. W3-18-1]
 gi|145564281|gb|ABP75216.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella
           putrefaciens CN-32]
          Length = 426

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LA+ +AR L V F       + +AG +   + N+            
Sbjct: 115 NILLIGPTGSGKTLLAETLARSLNVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 174

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 175 EKAQRGIVYIDEIDKIS 191


>gi|120436181|ref|YP_861867.1| DNA polymerase III subunit gamma/tau [Gramella forsetii KT0803]
 gi|117578331|emb|CAL66800.1| DNA polymerase III subunit gamma/tau [Gramella forsetii KT0803]
          Length = 653

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 93/233 (39%), Gaps = 49/233 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T ++  GQ +A +N           A+AL   LF GP G+GKTT A+++A+   +N 
Sbjct: 12  RPQTFKDVVGQ-QAITNTLANAINNNHLAQAL---LFTGPRGVGKTTCARILAK--MINQ 65

Query: 83  RSTSGP----------VIAKAGDLAALLTNLEDR----------DVLFIDEIHRLSIIVE 122
           + T  P          + A + +    + NL D+           V  IDE+H LS    
Sbjct: 66  KETQDPNEDFAFNIFELDAASNNSVDDIRNLIDQVRIPPQVGNYKVYIIDEVHMLSASA- 124

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                    F   L   E P   ++         I ATT    +   +  R  I    +F
Sbjct: 125 ---------FNAFLKTLEEPPKHAI--------FILATTEKHKIIPTILSRCQI---FDF 164

Query: 183 YEI--EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
             I   D K  +   A+  G+   D+A   IA ++ G  R A  +  RV  F+
Sbjct: 165 KRITVTDAKNYLAHIAEQEGVNAEDDALHIIAQKADGAMRDALSIYDRVVSFS 217


>gi|93359803|gb|ABF13334.1| RUVBL1-FK [Homo sapiens]
          Length = 386

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 31/62 (50%)

Query: 18 DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
          D S L  +      GQ  A     V +E  K++  A   VL  GPPG GKT LA  +A+E
Sbjct: 27 DESGLAKQAASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQE 86

Query: 78 LG 79
          LG
Sbjct: 87 LG 88


>gi|24373361|ref|NP_717404.1| ATP-dependent protease ATP-binding subunit [Shewanella oneidensis
           MR-1]
 gi|46576583|sp|Q8EG18|CLPX_SHEON RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|24347624|gb|AAN54848.1|AE015624_1 ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella
           oneidensis MR-1]
          Length = 426

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LA+ +AR L V F       + +AG +   + N+            
Sbjct: 115 NILLIGPTGSGKTLLAETLARSLNVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 174

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 175 EKAQRGIVYIDEIDKIS 191


>gi|87302738|ref|ZP_01085549.1| FtsH ATP-dependent protease-like protein [Synechococcus sp. WH
           5701]
 gi|87282621|gb|EAQ74579.1| FtsH ATP-dependent protease-like protein [Synechococcus sp. WH
           5701]
          Length = 641

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 219 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSG 249


>gi|332669946|ref|YP_004452954.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Cellulomonas
           fimi ATCC 484]
 gi|332338984|gb|AEE45567.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Cellulomonas
           fimi ATCC 484]
          Length = 425

 Score = 40.4 bits (93), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------ED 105
           A  ++L VGP G GKT LAQ +AR L V F       + +AG +   + N+        D
Sbjct: 112 AKSNILLVGPTGTGKTYLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAAD 171

Query: 106 RDV-------LFIDEIHRLS 118
            DV       ++IDEI +++
Sbjct: 172 YDVKKAEQGIIYIDEIDKIA 191


>gi|312374261|gb|EFR21850.1| hypothetical protein AND_16263 [Anopheles darlingi]
          Length = 681

 Score = 40.4 bits (93), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108
           VL VGPPG GKT LA+ VA E G  F + S   +     G+   L      +        
Sbjct: 517 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPST 576

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 577 IFIDEIDSL 585


>gi|260101304|ref|ZP_05751541.1| AAA family ATPase [Lactobacillus helveticus DSM 20075]
 gi|260084889|gb|EEW69009.1| AAA family ATPase [Lactobacillus helveticus DSM 20075]
          Length = 89

 Score = 40.4 bits (93), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 7/64 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLF 110
           ++  GPPG GKTTLA+++A+    +F + S  V +   D+  ++   E      ++ ++F
Sbjct: 13  LILWGPPGTGKTTLAEIIAKRTKAHFITFSA-VTSSIKDIRKIMEEAEQNRQFGEKTIVF 71

Query: 111 IDEI 114
           IDEI
Sbjct: 72  IDEI 75


>gi|297570186|ref|YP_003691530.1| ATP-dependent protease La [Desulfurivibrio alkaliphilus AHT2]
 gi|296926101|gb|ADH86911.1| ATP-dependent protease La [Desulfurivibrio alkaliphilus AHT2]
          Length = 790

 Score = 40.4 bits (93), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 17/30 (56%), Positives = 21/30 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTS 86
           + FVGPPG+GKT+L Q +AR LG  F   S
Sbjct: 369 LCFVGPPGVGKTSLGQSIARALGRKFHRIS 398


>gi|223985489|ref|ZP_03635548.1| hypothetical protein HOLDEFILI_02854 [Holdemania filiformis DSM
           12042]
 gi|223962578|gb|EEF67031.1| hypothetical protein HOLDEFILI_02854 [Holdemania filiformis DSM
           12042]
          Length = 619

 Score = 40.4 bits (93), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 15/105 (14%)

Query: 25  RTLEEFTGQVEACSNLKVFIE-------AAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +T ++  GQ EA   L   ++         K  A+     L VGPPG GKT LA+ VA E
Sbjct: 163 KTFQDVAGQDEAKEALSEIVDFLHNPDKYKKLGAKMPKGALLVGPPGTGKTLLAKAVAGE 222

Query: 78  LGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--VLFIDEI 114
             V F S SG    +      A  +  L    +++   ++FIDEI
Sbjct: 223 ANVPFFSISGSEFVEMFVGMGAARVRDLFKQAQEKAPCIVFIDEI 267


>gi|195384914|ref|XP_002051157.1| GJ14606 [Drosophila virilis]
 gi|194147614|gb|EDW63312.1| GJ14606 [Drosophila virilis]
          Length = 332

 Score = 40.4 bits (93), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP  L++     E  S +  FI   +     L H+LF GPPG GKT+     AR+L
Sbjct: 18 RPNCLDDLISHEEIISTINRFINQKQ-----LPHLLFYGPPGTGKTSTILACARQL 68


>gi|168002938|ref|XP_001754170.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694724|gb|EDQ81071.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 958

 Score = 40.4 bits (93), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 36/69 (52%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           VL  GPPG GKT LA+ +A E GV F   +G    +   G  AA + +L  R       V
Sbjct: 455 VLLEGPPGCGKTLLAKAIAGEAGVPFYQMAGSEFVEVLVGVGAARIRDLFKRAKVNRPSV 514

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 515 VFIDEIDAL 523


>gi|159027910|emb|CAO89717.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 600

 Score = 40.4 bits (93), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL +GPPG GKT LA+ +A E GV F S SG
Sbjct: 182 VLLIGPPGTGKTLLAKAIAGEAGVPFFSISG 212


>gi|156840873|ref|XP_001643814.1| hypothetical protein Kpol_1044p15 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156114440|gb|EDO15956.1| hypothetical protein Kpol_1044p15 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 839

 Score = 40.4 bits (93), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 578 VLLWGPPGCGKTLLAKAVANESRANFISIKGP 609



 Score = 39.3 bits (90), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL  GPPG GKT++A  +A EL V F S S P +    +G+    + +L D        +
Sbjct: 247 VLLHGPPGCGKTSIANALAGELQVPFISISAPSVVSGMSGESEKKIRDLFDEAKAIAPCL 306

Query: 109 LFIDEIHRLS 118
           +F DEI  ++
Sbjct: 307 MFFDEIDAIT 316


>gi|118103080|ref|XP_001232112.1| PREDICTED: similar to ATP-dependent Lon protease [Gallus gallus]
          Length = 790

 Score = 40.4 bits (93), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 88/209 (42%), Gaps = 33/209 (15%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTT 69
             S+E+ ++S  +    E+  G  +    +  FI  ++ R      +L F GPPG+GKT+
Sbjct: 363 KCSEENLELSRAQAVLEEDHYGMDDVKKRILEFIAVSQLRGSTQGKILCFYGPPGVGKTS 422

Query: 70  LAQVVARELGVN-FRSTSG--------------PVIAKAGDLAALLTNLEDRD-VLFIDE 113
           +A+ +AR L    FR + G               V A  G +   L   +  + ++ IDE
Sbjct: 423 IARSIARALNREYFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLILIDE 482

Query: 114 IHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
           + ++        S  + E+L P      LD  +        V ++LS+   I        
Sbjct: 483 VDKIGRGYQGDPSSALLELLDPEQNSNFLDHYL-------DVPVDLSKVLFICTANVTET 535

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           +  PL+DR  + I ++ Y  E+   I +R
Sbjct: 536 IPEPLRDRMEV-INVSGYVAEEKLAIAER 563


>gi|111225921|ref|YP_716715.1| cell division protein FtsH [Frankia alni ACN14a]
 gi|111153453|emb|CAJ65211.1| Cell division protein FtsH (ATP-dependent zinc-metallo protease)
           [Frankia alni ACN14a]
          Length = 739

 Score = 40.4 bits (93), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 30/58 (51%), Gaps = 4/58 (6%)

Query: 34  VEACSNLKVFIEAAKA----RAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           +E    +K F+E         A+    VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 167 IEELQEIKEFLENPSKFQAIGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISG 224


>gi|148225893|ref|NP_001083856.1| ruvB-like 1 [Xenopus laevis]
 gi|49256030|gb|AAH71105.1| Ruvbl1 protein [Xenopus laevis]
          Length = 456

 Score = 40.4 bits (93), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 22/45 (48%), Positives = 27/45 (60%), Gaps = 3/45 (6%)

Query: 35 EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
          EAC    V +E  K++  A   VL  GPPG GKT LA  +A+ELG
Sbjct: 47 EACG---VIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88


>gi|78779135|ref|YP_397247.1| FtsH peptidase [Prochlorococcus marinus str. MIT 9312]
 gi|78712634|gb|ABB49811.1| membrane protease FtsH catalytic subunit [Prochlorococcus marinus
           str. MIT 9312]
          Length = 637

 Score = 40.4 bits (93), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 217 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSG 247


>gi|116621421|ref|YP_823577.1| ATPase central domain-containing protein [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116224583|gb|ABJ83292.1| AAA ATPase, central domain protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 482

 Score = 40.4 bits (93), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 13/128 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLF 110
           VL  GPPG GKTT+ + +A  L   F    G V+A  GD    +  + +        V+F
Sbjct: 269 VLLAGPPGTGKTTIGRALAHRLKSKFFLIDGTVVAGTGDFYCQVRQIFEAARRNAPSVIF 328

Query: 111 IDEIHRLSIIVEEILYPAMEDFQLDLMVG-EGPSARSVKINLSRFT---LIAATTRVGLL 166
           ID+     +I E    P +  + L ++ G E  SA  V + ++      L AA  R G +
Sbjct: 329 IDDT---DVIFEGDGDPGLYRYLLTMLDGLESASAGRVCVMMTAMNPGALPAAMLRSGRV 385

Query: 167 TNPLQDRF 174
              L+ R 
Sbjct: 386 ELWLETRL 393


>gi|325961735|ref|YP_004239641.1| membrane protease FtsH catalytic subunit [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323467822|gb|ADX71507.1| membrane protease FtsH catalytic subunit [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 687

 Score = 40.4 bits (93), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 4/58 (6%)

Query: 34  VEACSNLKVFI-EAAKARA---EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VE    +K F+ E AK +A   +    VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 177 VEELQEIKEFLQEPAKFQAVGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISG 234


>gi|317970009|ref|ZP_07971399.1| FtsH ATP-dependent protease-like protein [Synechococcus sp. CB0205]
          Length = 645

 Score = 40.4 bits (93), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 218 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSG 248


>gi|301607045|ref|XP_002933113.1| PREDICTED: ruvB-like 1 [Xenopus (Silurana) tropicalis]
          Length = 456

 Score = 40.4 bits (93), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 22/45 (48%), Positives = 27/45 (60%), Gaps = 3/45 (6%)

Query: 35 EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
          EAC    V +E  K++  A   VL  GPPG GKT LA  +A+ELG
Sbjct: 47 EACG---VIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88


>gi|298292193|ref|YP_003694132.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Starkeya
           novella DSM 506]
 gi|296928704|gb|ADH89513.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Starkeya
           novella DSM 506]
          Length = 423

 Score = 40.4 bits (93), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+         
Sbjct: 111 AKSNILLIGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSAD 170

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDEI ++S
Sbjct: 171 YNVERAQRGIVYIDEIDKIS 190


>gi|291518252|emb|CBK73473.1| ATP-dependent metalloprotease FtsH [Butyrivibrio fibrisolvens 16/4]
          Length = 515

 Score = 40.4 bits (93), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           V+ VGPPG GKT LA+ +A E GV F S SG
Sbjct: 86  VILVGPPGTGKTLLAKAIAGEAGVPFFSISG 116


>gi|254818503|ref|ZP_05223504.1| DNA polymerase III subunits gamma and tau [Mycobacterium
          intracellulare ATCC 13950]
          Length = 615

 Score = 40.4 bits (93), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 6/68 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
          RP T  E  GQ      L + +EA +     ++H  LF GP G GKT+ A+++AR L   
Sbjct: 8  RPATFAEVVGQEHVTEPLSIALEAGR-----INHAYLFSGPRGCGKTSSARILARSLNCA 62

Query: 82 FRSTSGPV 89
             T+ P 
Sbjct: 63 QGPTATPC 70


>gi|242095232|ref|XP_002438106.1| hypothetical protein SORBIDRAFT_10g008130 [Sorghum bicolor]
 gi|241916329|gb|EER89473.1| hypothetical protein SORBIDRAFT_10g008130 [Sorghum bicolor]
          Length = 687

 Score = 40.4 bits (93), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 261 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSG 291


>gi|228478308|ref|ZP_04062916.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           salivarius SK126]
 gi|228249987|gb|EEK09257.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           salivarius SK126]
          Length = 408

 Score = 40.4 bits (93), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +AR L V F       + +AG    D+  +L  L        
Sbjct: 112 NILMIGPTGSGKTFLAQTLARSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADFNI 171

Query: 104 --EDRDVLFIDEIHRLS 118
              +R ++++DEI +++
Sbjct: 172 ERAERGIIYVDEIDKIA 188


>gi|227821607|ref|YP_002825577.1| ATP-dependent protease ATP-binding subunit ClpX [Sinorhizobium
           fredii NGR234]
 gi|254763858|sp|C3MA45|CLPX_RHISN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|227340606|gb|ACP24824.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Sinorhizobium
           fredii NGR234]
          Length = 425

 Score = 40.4 bits (93), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  +++ VGP G GKT LAQ +AR + V F       + +AG +   + N+         
Sbjct: 113 AKSNIMLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 172

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDE+ ++S
Sbjct: 173 YNVERAQRGIVYIDEVDKIS 192


>gi|209521468|ref|ZP_03270175.1| AAA ATPase central domain protein [Burkholderia sp. H160]
 gi|209498098|gb|EDZ98246.1| AAA ATPase central domain protein [Burkholderia sp. H160]
          Length = 633

 Score = 40.4 bits (93), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 18/35 (51%), Positives = 23/35 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA 91
           +L VG PG+GKT LAQ +A E G NF S +G   +
Sbjct: 225 ILMVGAPGVGKTRLAQALAGECGANFVSITGSYFS 259


>gi|195118794|ref|XP_002003921.1| GI18168 [Drosophila mojavensis]
 gi|193914496|gb|EDW13363.1| GI18168 [Drosophila mojavensis]
          Length = 332

 Score = 40.4 bits (93), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP  L++     E  S +  FI   +     L H+LF GPPG GKT+     AR+L
Sbjct: 18 RPNCLDDLISHEEIISTINRFINQKQ-----LPHLLFYGPPGTGKTSTILACARQL 68


>gi|220927144|ref|YP_002502446.1| ATP-dependent protease ATP-binding subunit ClpX [Methylobacterium
           nodulans ORS 2060]
 gi|254763854|sp|B8IN27|CLPX_METNO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|219951751|gb|ACL62143.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Methylobacterium nodulans ORS 2060]
          Length = 423

 Score = 40.4 bits (93), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+         
Sbjct: 110 AKSNILLIGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASD 169

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDEI ++S
Sbjct: 170 YNVERAQRGIVYIDEIDKIS 189


>gi|146099593|ref|XP_001468685.1| ruvb-like 1 DNA helicase [Leishmania infantum]
 gi|134073053|emb|CAM71773.1| putative ruvb-like 1 DNA helicase [Leishmania infantum JPCM5]
 gi|322502722|emb|CBZ37805.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 459

 Score = 40.4 bits (93), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 30/50 (60%)

Query: 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
          F GQ +A     + +E  +++  A   +LF GPPG GKT LA  +A+ELG
Sbjct: 42 FVGQEKAREAAGIAVELIRSKKMAGRALLFAGPPGTGKTALALGIAKELG 91


>gi|109075576|ref|XP_001104133.1| PREDICTED: spermatogenesis-associated protein 5-like isoform 3
           [Macaca mulatta]
          Length = 892

 Score = 40.4 bits (93), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALL------TNLEDRDV 108
           VL  GPPG GKT +A+ VA E+G      +GP +I+K  G+  A L        L    +
Sbjct: 389 VLLYGPPGTGKTMIARAVANEVGAYVSVINGPEIISKFYGETEAKLRQIFAEATLRHPSI 448

Query: 109 LFIDEIHRLS 118
           +FIDE+  L 
Sbjct: 449 IFIDELDALC 458



 Score = 38.1 bits (87), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 15/32 (46%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG  KT +A+ +A E G+NF +  GP
Sbjct: 663 ILLYGPPGCSKTMIAKALANESGLNFLAIKGP 694


>gi|73984470|ref|XP_856885.1| PREDICTED: similar to RuvB-like protein 1 isoform 3 [Canis
          familiaris]
          Length = 353

 Score = 40.4 bits (93), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 31/62 (50%)

Query: 18 DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
          D S L  +      GQ  A     V +E  K++  A   VL  GPPG GKT LA  +A+E
Sbjct: 27 DESGLAKQAASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQE 86

Query: 78 LG 79
          LG
Sbjct: 87 LG 88


>gi|148547674|ref|YP_001267776.1| ATP-dependent metalloprotease FtsH [Pseudomonas putida F1]
 gi|310946757|sp|A5W382|FTSH_PSEP1 RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|148511732|gb|ABQ78592.1| ATP-dependent metalloprotease FtsH [Pseudomonas putida F1]
          Length = 615

 Score = 40.4 bits (93), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 9/118 (7%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQV-EACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           +R   + D  ++      +++  G++ E  S LK     A+  A      L VGPPG GK
Sbjct: 145 ARVYVEHDTQVTFADVAGIDDVKGELTEIVSFLKNKAWYARLGAHVPKGTLLVGPPGTGK 204

Query: 68  TTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEIHRL 117
           T +A+ +A E  V F S SG    +   G  AA + +L D+       ++FIDE+  L
Sbjct: 205 TLVAKAIAGEAAVPFFSISGSEFVEMFVGVGAARVRDLFDQARQAAPCIIFIDELDAL 262


>gi|186682152|ref|YP_001865348.1| ATP-dependent metalloprotease FtsH [Nostoc punctiforme PCC 73102]
 gi|186464604|gb|ACC80405.1| ATP-dependent metalloprotease FtsH [Nostoc punctiforme PCC 73102]
          Length = 642

 Score = 40.4 bits (93), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL +GPPG GKT LA+ +A E GV F S SG
Sbjct: 224 VLLIGPPGTGKTLLAKAIAGEAGVPFFSISG 254


>gi|330801691|ref|XP_003288858.1| hypothetical protein DICPUDRAFT_153140 [Dictyostelium purpureum]
 gi|325081104|gb|EGC34633.1| hypothetical protein DICPUDRAFT_153140 [Dictyostelium purpureum]
          Length = 348

 Score = 40.4 bits (93), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 24/35 (68%), Gaps = 1/35 (2%)

Query: 49 ARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVNF 82
           ++  L H+LF GPPG GKT+  Q +AR+L G N+
Sbjct: 50 TKSNTLPHLLFYGPPGTGKTSTIQAIARKLYGENY 84


>gi|312377133|gb|EFR24044.1| hypothetical protein AND_11679 [Anopheles darlingi]
          Length = 552

 Score = 40.4 bits (93), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108
           VL VGPPG GKT LA+ VA E G  F + S   +     G+   L      +        
Sbjct: 310 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPST 369

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 370 IFIDEIDSL 378


>gi|310798050|gb|EFQ32943.1| ATPase [Glomerella graminicola M1.001]
          Length = 1041

 Score = 40.4 bits (93), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 32/75 (42%), Gaps = 10/75 (13%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH----------VLFVGPPGLGKTTLAQVVA 75
           T  +     E  +NLK+    +  R EA  +           L  GPPG GKT LA+ VA
Sbjct: 729 TFADVHADPETKNNLKLLTSLSLVRPEAFTYGVLATDRIPGCLLYGPPGTGKTLLAKAVA 788

Query: 76  RELGVNFRSTSGPVI 90
           +E   N    SG  I
Sbjct: 789 KESSANMLEVSGASI 803


>gi|309792212|ref|ZP_07686684.1| ATP-dependent protease La [Oscillochloris trichoides DG6]
 gi|308225753|gb|EFO79509.1| ATP-dependent protease La [Oscillochloris trichoides DG6]
          Length = 814

 Score = 40.4 bits (93), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 114/273 (41%), Gaps = 55/273 (20%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           + FVGPPG+GKT+L + +AR L   F R++ G V  +A              G +   + 
Sbjct: 374 LCFVGPPGVGKTSLGRSIARSLNRQFIRTSLGGVRDEAEIRGHRRTYIGAMPGRVIQGMK 433

Query: 102 NLEDRDVLFI-DEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152
           +++    ++I DE+ ++        +  + E+L P   +   D  +        +  +LS
Sbjct: 434 SVKSNSPVYILDEVDKVGTDFRGDPTSALLEVLDPEQNNTFSDHYL-------EIPFDLS 486

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG---AKLTGLAVTDEAAC 209
           +   IA   ++  +  PL+DR  I I +  Y  ED K  + RG    K            
Sbjct: 487 KVIFIATANQLEPIPGPLRDRMEI-IEIGGY-TEDEKLGIARGFLVPKQREFHGLQPEQL 544

Query: 210 EIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKM------GFDQL 263
           EI           G +L+ VR++   A  + + RE+  A L R    K+      G +  
Sbjct: 545 EIT---------DGAVLKLVREYTREAGVRNLEREL--ATLCRKVARKVASATEPGAESG 593

Query: 264 DLRYLTMIARNFGGGPVGIETISAGLSEPRDAI 296
             RY+  I  +     +G E  + GL+E RD I
Sbjct: 594 PERYV--IDTDDVATYLGPERFTFGLAEERDEI 624


>gi|297834890|ref|XP_002885327.1| hypothetical protein ARALYDRAFT_479491 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297331167|gb|EFH61586.1| hypothetical protein ARALYDRAFT_479491 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1003

 Score = 40.4 bits (93), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           +L  GPPG GKT LA+ +A E G NF S +G  +     GD   L   L          +
Sbjct: 752 ILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVI 811

Query: 109 LFIDEIHRL 117
           +F+DE+  L
Sbjct: 812 IFVDEVDSL 820


>gi|296535580|ref|ZP_06897761.1| cell division protein FtsH [Roseomonas cervicalis ATCC 49957]
 gi|296264096|gb|EFH10540.1| cell division protein FtsH [Roseomonas cervicalis ATCC 49957]
          Length = 622

 Score = 40.4 bits (93), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           +L VGPPG GKT +A+ +A E GV+F S SG    +   G  AA + +L ++       +
Sbjct: 192 ILLVGPPGTGKTLVARAIAGEAGVSFFSISGSEFVEMFVGVGAARVRDLFEQARKAAPCI 251

Query: 109 LFIDEIHRL 117
           +FIDE+  L
Sbjct: 252 IFIDELDAL 260


>gi|294101894|ref|YP_003553752.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Aminobacterium colombiense DSM 12261]
 gi|293616874|gb|ADE57028.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Aminobacterium colombiense DSM 12261]
          Length = 429

 Score = 40.4 bits (93), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           +VL +GP G GKT LAQ +A++L V F       + +AG    D+  +L  L        
Sbjct: 124 NVLLIGPTGSGKTLLAQSLAKKLNVPFAMADATTLTEAGYVGEDVENILVRLLQAADYDI 183

Query: 104 --EDRDVLFIDEIHRLS 118
              +R +++IDE+ +++
Sbjct: 184 QAAERGIIYIDELDKIT 200


>gi|240168347|ref|ZP_04747006.1| hypothetical protein MkanA1_03482 [Mycobacterium kansasii ATCC
           12478]
          Length = 573

 Score = 40.4 bits (93), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 14/78 (17%)

Query: 4   REGLLSRNVSQEDADISLLRPRT-LEEF-----TGQVEACSNLKVFIEAAKARAEALDHV 57
           RE LL+   ++ D  I L R +  +E +       +V A   +KV        A+   H+
Sbjct: 279 RERLLAEAQAELDRQIGLTRVKAQIERYRAATMMARVRAAKGMKV--------AQPSKHM 330

Query: 58  LFVGPPGLGKTTLAQVVA 75
           +F GPPG GKTT+A+VVA
Sbjct: 331 IFTGPPGTGKTTIARVVA 348


>gi|255712125|ref|XP_002552345.1| KLTH0C02684p [Lachancea thermotolerans]
 gi|238933724|emb|CAR21907.1| KLTH0C02684p [Lachancea thermotolerans]
          Length = 1019

 Score = 40.4 bits (93), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  G PG GKT LA  VA++ G+NF S  GP I
Sbjct: 718 ILLYGYPGCGKTMLASAVAQQCGLNFISIKGPEI 751


>gi|260939716|ref|XP_002614158.1| hypothetical protein CLUG_05644 [Clavispora lusitaniae ATCC 42720]
 gi|238852052|gb|EEQ41516.1| hypothetical protein CLUG_05644 [Clavispora lusitaniae ATCC 42720]
          Length = 805

 Score = 40.4 bits (93), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 59/250 (23%), Positives = 98/250 (39%), Gaps = 47/250 (18%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF------------------RSTSGPVIAKAGDLAA 98
           +   GPPG GKT++A+ +A  L   +                  R+  G +  +   +AA
Sbjct: 573 LCLAGPPGTGKTSIAKSIAEALDRRYVRIAMGGIQDVHEVKGHRRTYIGSIPGRI--IAA 630

Query: 99  LLTNLEDRDVLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKIN 150
           L +      ++ IDEI +L +           EIL P   +  +D  +        VK++
Sbjct: 631 LKSAKTSNPLMLIDEIDKLDLSRSGGAASAFLEILDPEQNNAFVDNYI-------DVKVD 683

Query: 151 LSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL----KTIVQRGAKLTGLAVTDE 206
           LS+   +     +G +  PL+DR  +     +   E L    K ++ + AK  GL   DE
Sbjct: 684 LSKVLFVCTANYLGNIPGPLRDRMEVIDVSGYTNNEKLEIARKHLIPQAAKKAGL---DE 740

Query: 207 AACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLR 266
           +   I   +     I   + +  R+       K ITR  + A+L  +   +   DQ   R
Sbjct: 741 SHVVIPEET-----ITTLIEKYCRESGLRNIKKLITRIFSKASLKIVEELEEKGDQGGKR 795

Query: 267 YLTMIARNFG 276
                 RNFG
Sbjct: 796 ADGNFQRNFG 805


>gi|256374468|ref|YP_003098128.1| ATP-dependent metalloprotease FtsH [Actinosynnema mirum DSM 43827]
 gi|255918771|gb|ACU34282.1| ATP-dependent metalloprotease FtsH [Actinosynnema mirum DSM 43827]
          Length = 743

 Score = 40.4 bits (93), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 32/59 (54%), Gaps = 6/59 (10%)

Query: 34  VEACSNLKVFIEAAKARAEAL-----DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VE    +K F++    R +AL       VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 175 VEELYEIKDFLQNP-GRYQALGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISG 232


>gi|226324935|ref|ZP_03800453.1| hypothetical protein COPCOM_02727 [Coprococcus comes ATCC 27758]
 gi|225206283|gb|EEG88637.1| hypothetical protein COPCOM_02727 [Coprococcus comes ATCC 27758]
          Length = 587

 Score = 40.4 bits (93), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E  V F S SG    +      A  +  L    +++   +
Sbjct: 184 VLLVGPPGTGKTMLAKAVAGESNVPFFSMSGSEFVEMFVGMGASKVRDLFKQAKEKAPCI 243

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 244 VFIDEI 249


>gi|224068787|ref|XP_002302825.1| predicted protein [Populus trichocarpa]
 gi|222844551|gb|EEE82098.1| predicted protein [Populus trichocarpa]
          Length = 485

 Score = 40.4 bits (93), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 269 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 299


>gi|149926125|ref|ZP_01914387.1| ATP-dependent protease ATP-binding subunit [Limnobacter sp. MED105]
 gi|149824943|gb|EDM84155.1| ATP-dependent protease ATP-binding subunit [Limnobacter sp. MED105]
          Length = 423

 Score = 40.4 bits (93), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L VGP G GKT LAQ +AR L V F       + +AG +   + N+            
Sbjct: 113 NILLVGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQSCNYEV 172

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 173 EKAQRGIVYIDEIDKIS 189


>gi|145350673|ref|XP_001419724.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579956|gb|ABO98017.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 342

 Score = 40.4 bits (93), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 5/78 (6%)

Query: 1  MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
          M+D E    +        +   RPR +++   Q +    L+  ++        + H LF 
Sbjct: 1  MVDAEATRPQRAEAHAPWVEKYRPRVVKDVASQEQIVGVLENALKTGN-----MPHCLFY 55

Query: 61 GPPGLGKTTLAQVVAREL 78
          GPPG GKTT A  +A+EL
Sbjct: 56 GPPGTGKTTTALAIAKEL 73


>gi|124266486|ref|YP_001020490.1| ATP-dependent protease ATP-binding subunit ClpX [Methylibium
           petroleiphilum PM1]
 gi|166214784|sp|A2SFB6|CLPX_METPP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|124259261|gb|ABM94255.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Methylibium
           petroleiphilum PM1]
          Length = 423

 Score = 40.4 bits (93), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE 104
           A  ++L +GP G GKT LAQ +AR L V F       + +AG +          LL N  
Sbjct: 116 AKSNILLIGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCN 175

Query: 105 ------DRDVLFIDEIHRLS 118
                  R +++IDEI ++S
Sbjct: 176 YEVERAQRGIVYIDEIDKIS 195


>gi|116074799|ref|ZP_01472060.1| hypothetical protein RS9916_29734 [Synechococcus sp. RS9916]
 gi|116068021|gb|EAU73774.1| hypothetical protein RS9916_29734 [Synechococcus sp. RS9916]
          Length = 638

 Score = 40.4 bits (93), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 217 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSG 247


>gi|169767788|ref|XP_001818365.1| replication factor C subunit 2 [Aspergillus oryzae RIB40]
 gi|83766220|dbj|BAE56363.1| unnamed protein product [Aspergillus oryzae]
          Length = 391

 Score = 40.4 bits (93), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 5/66 (7%)

Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
          +Q+   +   RP+TL++   Q    + L+  ++A+      L H+LF GPPG GKT+   
Sbjct: 33 AQQQPWVEKYRPKTLDDVAAQDHTTNVLQRTLQASN-----LPHMLFYGPPGTGKTSTIL 87

Query: 73 VVAREL 78
           +A+ L
Sbjct: 88 ALAKSL 93


>gi|15965009|ref|NP_385362.1| ATP-dependent protease ATP-binding subunit [Sinorhizobium meliloti
           1021]
 gi|307301081|ref|ZP_07580850.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sinorhizobium
           meliloti BL225C]
 gi|307317815|ref|ZP_07597253.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sinorhizobium
           meliloti AK83]
 gi|21263475|sp|Q92QQ2|CLPX_RHIME RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|15074188|emb|CAC45835.1| Probable ATP-dependent CLP protease ATP-binding subunit
           [Sinorhizobium meliloti 1021]
 gi|306896577|gb|EFN27325.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sinorhizobium
           meliloti AK83]
 gi|306904036|gb|EFN34622.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sinorhizobium
           meliloti BL225C]
          Length = 425

 Score = 40.4 bits (93), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  +++ VGP G GKT LAQ +AR + V F       + +AG +   + N+         
Sbjct: 113 AKSNIMLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 172

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDE+ ++S
Sbjct: 173 YNVERAQRGIVYIDEVDKIS 192


>gi|118581608|ref|YP_902858.1| ATP-dependent protease La [Pelobacter propionicus DSM 2379]
 gi|118504318|gb|ABL00801.1| ATP-dependent protease La [Pelobacter propionicus DSM 2379]
          Length = 771

 Score = 40.4 bits (93), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 69/159 (43%), Gaps = 40/159 (25%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA---GDLAALLTNLEDR------ 106
           + FVGPPG+GKT+L + +AR LG  F R + G +  +A   G     +  L  R      
Sbjct: 352 LCFVGPPGVGKTSLGKSIARSLGRKFVRISLGGMRDEAEIRGHRRTYIGALPGRIIKEIF 411

Query: 107 ------DVLFIDEIHRL--------SIIVEEILYP----AMEDFQLDLMVGEGPSARSVK 148
                  V  +DEI +L        +  + E+L P    + +D  LD           V 
Sbjct: 412 RCGSNNPVFMLDEIDKLGQDFRGDPASALLEVLDPEQNFSFQDHYLD-----------VP 460

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
            +LS+   I    ++  +  PL+DR  + IRL  Y  E+
Sbjct: 461 FDLSKVMFITTANQLDPIPGPLKDRMEV-IRLAGYSTEE 498


>gi|116747550|ref|YP_844237.1| ATP-dependent protease ATP-binding subunit ClpX [Syntrophobacter
           fumaroxidans MPOB]
 gi|116696614|gb|ABK15802.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Syntrophobacter fumaroxidans MPOB]
          Length = 417

 Score = 40.4 bits (93), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +AR L V F       + +AG    D+  +L +L        
Sbjct: 112 NILMIGPTGSGKTLLAQTLARILNVPFTIADATTLTEAGYVGEDVENILVSLIQAADYDI 171

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI +++
Sbjct: 172 EKASRGIVYIDEIDKIA 188


>gi|307825991|ref|ZP_07656205.1| ATP-dependent protease La [Methylobacter tundripaludum SV96]
 gi|307732966|gb|EFO03829.1| ATP-dependent protease La [Methylobacter tundripaludum SV96]
          Length = 806

 Score = 40.4 bits (93), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 59/247 (23%), Positives = 101/247 (40%), Gaps = 52/247 (21%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA-------GDLAALLTNL----- 103
           + FVGPPG+GKT+L + +AR  G  F R++ G    +A         + AL  N+     
Sbjct: 381 LCFVGPPGVGKTSLGRSIARATGREFIRASLGGTHDEAEIRGHRRTYIGALPGNIIQSIR 440

Query: 104 ---EDRDVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152
               +  V  +DE+ +L        S  + E+L P       D  +       +V  +LS
Sbjct: 441 KAGTNNPVFMLDEMDKLGSGFQGDPSSALLEVLDPEQNSTFRDNYL-------AVAFDLS 493

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED-----LKTIVQRGAKLTGLAVTDEA 207
               I     +  +  PL+DR  + I L  Y  ++      + +VQR  + +GL     A
Sbjct: 494 HVMFIGTANVLDSIPGPLRDRMEV-IELTGYTTDEKLQIAKRYLVQRQLESSGLTPEQCA 552

Query: 208 ACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA---ALLRLAIDKMGFDQLD 264
             E A            +L  ++D+   A  + + REI        +R+A   +  +Q+D
Sbjct: 553 ITENA------------ILTIIQDYTREAGCRNLEREIGSVFRHVAMRIAESLVVNEQID 600

Query: 265 LRYLTMI 271
             ++  I
Sbjct: 601 SEHIPGI 607


>gi|303390791|ref|XP_003073626.1| replication factor C [Encephalitozoon intestinalis ATCC 50506]
 gi|303302773|gb|ADM12266.1| replication factor C [Encephalitozoon intestinalis ATCC 50506]
          Length = 309

 Score = 40.4 bits (93), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 5/60 (8%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          ++  RP  +++  G       + + I++     + + H+LF GPPG GKTT A+++AR+L
Sbjct: 5  VNKYRPNEVQDVIGNQMTVELVSLIIDS-----KDMPHLLFAGPPGTGKTTCAKILARKL 59


>gi|289707001|ref|ZP_06503336.1| ATP-dependent metallopeptidase HflB [Micrococcus luteus SK58]
 gi|289556326|gb|EFD49682.1| ATP-dependent metallopeptidase HflB [Micrococcus luteus SK58]
          Length = 696

 Score = 40.4 bits (93), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 202 VLLYGPPGTGKTLLAKAVAGEAGVPFYSISG 232


>gi|260589156|ref|ZP_05855069.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Blautia
           hansenii DSM 20583]
 gi|260540576|gb|EEX21145.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Blautia
           hansenii DSM 20583]
          Length = 456

 Score = 40.4 bits (93), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 28/130 (21%)

Query: 17  ADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEA---------LDHVLFVGP 62
            +I+LL+P+ ++E       GQ EA   L V +     R  +           ++L +GP
Sbjct: 80  GEINLLKPQEIKEILDEYVIGQDEAKKVLSVAVYNHYKRVLSGGNTDVELQKSNILMLGP 139

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRD-------V 108
            G GKT LAQ +AR L V F       + +AG +   + N+        D D       +
Sbjct: 140 TGSGKTLLAQTLARLLNVPFAIADATTLTEAGYVGEDVENILLKIIQAADYDIERAQYGI 199

Query: 109 LFIDEIHRLS 118
           ++IDEI +++
Sbjct: 200 IYIDEIDKIT 209


>gi|224418139|ref|ZP_03656145.1| ATP-dependent Zn protease [Helicobacter canadensis MIT 98-5491]
 gi|253827466|ref|ZP_04870351.1| ATP-dependent Zn protease [Helicobacter canadensis MIT 98-5491]
 gi|313141674|ref|ZP_07803867.1| atpase-ATP-dependent zn protease [Helicobacter canadensis MIT
           98-5491]
 gi|253510872|gb|EES89531.1| ATP-dependent Zn protease [Helicobacter canadensis MIT 98-5491]
 gi|313130705|gb|EFR48322.1| atpase-ATP-dependent zn protease [Helicobacter canadensis MIT
           98-5491]
          Length = 555

 Score = 40.4 bits (93), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 47/103 (45%), Gaps = 15/103 (14%)

Query: 27  LEEFTGQVEACSNLKVFIEAAKARAEALDH-------VLFVGPPGLGKTTLAQVVARELG 79
            E+  G  EA   LK  ++  K+  +  D        VL VGPPG+GKT +A+ +A E  
Sbjct: 156 FEDVAGITEAKEELKEIVDYLKSPKKYQDFGVKLPKGVLLVGPPGVGKTLIAKALAGEAK 215

Query: 80  VNFRSTSGPVIAK------AGDLAALLT--NLEDRDVLFIDEI 114
           V F   SG    +      A  +  L T   L    ++FIDEI
Sbjct: 216 VPFYYQSGASFVQIYVGMGAKRVHDLFTKAKLNAPAIIFIDEI 258


>gi|184152912|ref|YP_001841253.1| cell division protein FtsH [Lactobacillus reuteri JCM 1112]
 gi|183224256|dbj|BAG24773.1| cell division protein FtsH [Lactobacillus reuteri JCM 1112]
          Length = 680

 Score = 40.4 bits (93), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 44/89 (49%), Gaps = 11/89 (12%)

Query: 34  VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK- 92
           VE   N K F    K  A     VL  GPPG GKT LA+ VA E GV F S SG    + 
Sbjct: 189 VEFLKNPKKF---TKLGARIPSGVLLEGPPGTGKTLLAKAVAGESGVPFFSISGSDFVEM 245

Query: 93  -AGDLAALLTNLEDR------DVLFIDEI 114
             G  A+ + +L D+       ++FIDEI
Sbjct: 246 FVGVGASRVRDLFDQAKKAAPAIIFIDEI 274


>gi|172036958|ref|YP_001803459.1| cell division protein [Cyanothece sp. ATCC 51142]
 gi|171698412|gb|ACB51393.1| cell division protein [Cyanothece sp. ATCC 51142]
          Length = 660

 Score = 40.4 bits (93), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL VGPPG GKT LA+ VA E GV F S S     +   G  AA + +L ++       +
Sbjct: 244 VLLVGPPGTGKTLLAKAVAGEAGVTFFSISASEFVELFVGTGAARVRDLFEQAKKQAPCI 303

Query: 109 LFIDEI 114
           +FIDE+
Sbjct: 304 IFIDEL 309


>gi|209548851|ref|YP_002280768.1| ATP-dependent protease ATP-binding subunit ClpX [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|238066658|sp|B5ZY09|CLPX_RHILW RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|209534607|gb|ACI54542.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 425

 Score = 40.4 bits (93), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  +++ VGP G GKT LAQ +AR + V F       + +AG +   + N+         
Sbjct: 113 AKSNIMLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQSAD 172

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDE+ ++S
Sbjct: 173 YNVERAQRGIVYIDEVDKIS 192


>gi|170744619|ref|YP_001773274.1| ATP-dependent protease ATP-binding subunit ClpX [Methylobacterium
           sp. 4-46]
 gi|238688059|sp|B0UD19|CLPX_METS4 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|168198893|gb|ACA20840.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Methylobacterium sp. 4-46]
          Length = 423

 Score = 40.4 bits (93), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+         
Sbjct: 110 AKSNILLIGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASD 169

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDEI ++S
Sbjct: 170 YNVERAQRGIVYIDEIDKIS 189


>gi|114563761|ref|YP_751274.1| ATP-dependent protease ATP-binding subunit [Shewanella
           frigidimarina NCIMB 400]
 gi|122299289|sp|Q07ZX9|CLPX_SHEFN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|114335054|gb|ABI72436.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella
           frigidimarina NCIMB 400]
          Length = 426

 Score = 40.4 bits (93), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LA+ +AR L V F       + +AG +   + N+            
Sbjct: 115 NILLLGPTGSGKTLLAETLARSLNVPFAMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 174

Query: 104 --EDRDVLFIDEIHRLS 118
              +R +++IDEI ++S
Sbjct: 175 EKAERGIVYIDEIDKIS 191


>gi|222055724|ref|YP_002538086.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Geobacter sp.
           FRC-32]
 gi|254763849|sp|B9M0Y2|CLPX_GEOSF RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|221565013|gb|ACM20985.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Geobacter sp.
           FRC-32]
          Length = 417

 Score = 40.4 bits (93), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 56/117 (47%), Gaps = 25/117 (21%)

Query: 27  LEEFT-GQVEACSNLKVFIEAAKARAEAL----------DHVLFVGPPGLGKTTLAQVVA 75
           L+E+  GQ +A   L V +     R EA+           ++L +GP G GKT LAQ +A
Sbjct: 73  LDEYVIGQKQAKKVLAVAVYNHYKRIEAMTKPGEVEMQKSNILLLGPTGSGKTLLAQTLA 132

Query: 76  RELGVNFRSTSGPVIAKAG----DLAALLTNL---EDRDV-------LFIDEIHRLS 118
           R L V F       + +AG    D+  ++ NL    D DV       ++IDEI +++
Sbjct: 133 RILKVPFAMADATNLTEAGYVGEDVENIILNLLQAADYDVERAQKGIIYIDEIDKIA 189


>gi|332820137|ref|XP_003310499.1| PREDICTED: spermatogenesis-associated protein 5 isoform 1 [Pan
           troglodytes]
          Length = 790

 Score = 40.4 bits (93), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALL------TNLEDRDV 108
           VL  GPPG GKT +A+ VA E+G      +GP +I+K  G+  A L        L    +
Sbjct: 390 VLLYGPPGTGKTMIARAVANEVGAYVSVINGPEIISKFYGETEAKLRQIFAEATLRHPSI 449

Query: 109 LFIDEIHRL 117
           +FIDE+  L
Sbjct: 450 IFIDELDAL 458



 Score = 38.5 bits (88), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 16/32 (50%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG  KT +A+ +A E G+NF +  GP
Sbjct: 664 VLLYGPPGCSKTMIAKALANESGLNFLAIKGP 695


>gi|312863135|ref|ZP_07723373.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           vestibularis F0396]
 gi|311100671|gb|EFQ58876.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           vestibularis F0396]
          Length = 408

 Score = 40.4 bits (93), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +AR L V F       + +AG    D+  +L  L        
Sbjct: 112 NILMIGPTGSGKTFLAQTLARSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADFNI 171

Query: 104 --EDRDVLFIDEIHRLS 118
              +R ++++DEI +++
Sbjct: 172 ERAERGIIYVDEIDKIA 188


>gi|303245833|ref|ZP_07332115.1| ATP-dependent protease La [Desulfovibrio fructosovorans JJ]
 gi|302492616|gb|EFL52484.1| ATP-dependent protease La [Desulfovibrio fructosovorans JJ]
          Length = 819

 Score = 40.4 bits (93), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 92/223 (41%), Gaps = 51/223 (22%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA---GDLAALLTNLEDR------ 106
           + FVGPPG+GKT+L + +AR LG  F R + G +  +A   G     + ++  R      
Sbjct: 388 LCFVGPPGVGKTSLGRSIARALGRKFVRMSLGGMRDEAEIRGHRRTYIGSMPGRVIQSIK 447

Query: 107 ------DVLFIDEIHRL--------SIIVEEILYPAMED-FQLDLMVGEGPSARSVKINL 151
                  V+ +DEI ++        S  + E+L P   + FQ   +        +V  +L
Sbjct: 448 QAGTRNPVIMLDEIDKVGSDFRGDPSSALLEVLDPEQNNTFQDHYL--------NVPFDL 499

Query: 152 SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT----IVQRGAKLTGLAVTDEA 207
           S+   I     +  +  PL DR  +     + E E +K     I+ R  K  GL   D  
Sbjct: 500 SKVMFICTANILDTIPGPLLDRMELIQLPGYTEQEKVKIARRYILPRQIKENGLEPGDMT 559

Query: 208 ACEIAMRSRGTPRIAGRLLRRV-RDFAEVAHAKTITREIADAA 249
                        I+ +++ RV RD+   A  + + REI   A
Sbjct: 560 -------------ISDKVVARVIRDYTREAGLRNLEREIGSVA 589


>gi|300859209|ref|YP_003784192.1| cell division protein [Corynebacterium pseudotuberculosis FRC41]
 gi|300686663|gb|ADK29585.1| cell division protein [Corynebacterium pseudotuberculosis FRC41]
 gi|302206898|gb|ADL11240.1| Cell division protease ftsH-like protein [Corynebacterium
           pseudotuberculosis C231]
 gi|302331465|gb|ADL21659.1| Cell division protein [Corynebacterium pseudotuberculosis 1002]
 gi|308277152|gb|ADO27051.1| Cell division protein [Corynebacterium pseudotuberculosis I19]
          Length = 667

 Score = 40.4 bits (93), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 35/70 (50%), Gaps = 9/70 (12%)

Query: 26  TLEEFTGQVEACSNL---KVFIEAAKARAEALDH-----VLFVGPPGLGKTTLAQVVARE 77
           T  +  G  EA   L   K F+E   +R E L       VL  GPPG GKT LA+ VA E
Sbjct: 161 TFADVAGAEEAVDELHEIKDFLEDP-SRYEQLGAKIPRGVLLYGPPGTGKTLLARAVAGE 219

Query: 78  LGVNFRSTSG 87
            GV F S SG
Sbjct: 220 AGVPFYSISG 229


>gi|289423791|ref|ZP_06425586.1| cell division protease FtsH [Peptostreptococcus anaerobius 653-L]
 gi|289155830|gb|EFD04500.1| cell division protease FtsH [Peptostreptococcus anaerobius 653-L]
          Length = 645

 Score = 40.4 bits (93), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 20/30 (66%), Positives = 21/30 (70%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           L VGPPG GKT LA+ VA E GV F S SG
Sbjct: 200 LLVGPPGTGKTLLAKAVAGEAGVPFFSISG 229


>gi|225442743|ref|XP_002284961.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297743333|emb|CBI36200.3| unnamed protein product [Vitis vinifera]
          Length = 521

 Score = 40.4 bits (93), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLED------RDV 108
           VL  GPPG GKT LA+ VA E G  F + S   +A    G+   ++  L D         
Sbjct: 273 VLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPST 332

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 333 IFIDEIDSL 341


>gi|218290815|ref|ZP_03494884.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Alicyclobacillus acidocaldarius LAA1]
 gi|258511811|ref|YP_003185245.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|218239173|gb|EED06374.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Alicyclobacillus acidocaldarius LAA1]
 gi|257478537|gb|ACV58856.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 423

 Score = 40.4 bits (93), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +AR L V F       + +AG    D+  +L  L        
Sbjct: 112 NILLIGPTGSGKTLLAQTLARTLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDI 171

Query: 104 --EDRDVLFIDEIHRLS 118
              +R +++IDEI +++
Sbjct: 172 EKAERGIIYIDEIDKIA 188


>gi|193215075|ref|YP_001996274.1| ATP-dependent metalloprotease FtsH [Chloroherpeton thalassium ATCC
           35110]
 gi|193088552|gb|ACF13827.1| ATP-dependent metalloprotease FtsH [Chloroherpeton thalassium ATCC
           35110]
          Length = 700

 Score = 40.4 bits (93), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E G  F S SG       V   A  +  L    +++   +
Sbjct: 229 VLLVGPPGTGKTLLAKAVAGEAGAPFFSISGSDFVEMFVGVGAARVRDLFKQAKEKAPCI 288

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 289 IFIDEI 294


>gi|183985209|ref|YP_001853500.1| DNA polymerase III (subunit gamma/tau) DnaZX [Mycobacterium
          marinum M]
 gi|183178535|gb|ACC43645.1| DNA polymerase III (subunit gamma/tau) DnaZX [Mycobacterium
          marinum M]
          Length = 633

 Score = 40.4 bits (93), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 6/68 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
          RP T  E  GQ      L + +EA +     ++H  LF GP G GKT+ A+++AR L   
Sbjct: 8  RPATFAEVVGQEHVTEPLSIALEAGR-----INHAYLFSGPRGCGKTSSARILARSLNCA 62

Query: 82 FRSTSGPV 89
             T+ P 
Sbjct: 63 QGPTATPC 70


>gi|160935941|ref|ZP_02083315.1| hypothetical protein CLOBOL_00836 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441183|gb|EDP18900.1| hypothetical protein CLOBOL_00836 [Clostridium bolteae ATCC
           BAA-613]
          Length = 604

 Score = 40.4 bits (93), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           +L VGPPG GKT LA+ VA E GV F S SG
Sbjct: 196 LLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 226


>gi|149185471|ref|ZP_01863787.1| Cell division cycle protein [Erythrobacter sp. SD-21]
 gi|148830691|gb|EDL49126.1| Cell division cycle protein [Erythrobacter sp. SD-21]
          Length = 774

 Score = 40.4 bits (93), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 35/70 (50%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG---DLAALLTNLEDRD-----V 108
           VL  GPPG GKT LAQ VA E    F + +GP I  +G      AL    E        +
Sbjct: 245 VLLHGPPGTGKTRLAQAVANESDAEFFTINGPEIMGSGYGESEKALREVFEQATKASPAI 304

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 305 IFIDEIDSIA 314


>gi|119963542|ref|YP_945966.1| cell division protein (ftsH) [Arthrobacter aurescens TC1]
 gi|119950401|gb|ABM09312.1| putative cell division protein (ftsH) [Arthrobacter aurescens TC1]
          Length = 689

 Score = 40.4 bits (93), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 4/58 (6%)

Query: 34  VEACSNLKVFI-EAAKARA---EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VE    +K F+ E AK +A   +    VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 178 VEELQEIKEFLQEPAKFQAVGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISG 235


>gi|116491694|ref|YP_811238.1| ATP-dependent protease ATP-binding subunit [Oenococcus oeni PSU-1]
 gi|116092419|gb|ABJ57573.1| ATP-dependent protease Clp, ATPase subunit [Oenococcus oeni PSU-1]
          Length = 421

 Score = 40.4 bits (93), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 26/126 (20%)

Query: 25  RTLEEFT-GQVEACSNLKVFIEAAKARA-EALDH----------VLFVGPPGLGKTTLAQ 72
           + L E+  GQ EA   L V +     R  E+L H          +L +GP G GKT LAQ
Sbjct: 72  KHLNEYVIGQEEAKKTLAVAVYNHYKRVNESLQHKSDVELQKSNILLIGPTGSGKTYLAQ 131

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNL--------------EDRDVLFIDEIHRLS 118
            +A+ L V F       + +AG +   + N+                R +++IDEI +++
Sbjct: 132 SLAKMLDVPFAIADATTLTEAGYVGEDVENVVLKLLQAADFDVEKAQRGIIYIDEIDKIA 191

Query: 119 IIVEEI 124
              E +
Sbjct: 192 KKSENV 197


>gi|150396096|ref|YP_001326563.1| ATP-dependent protease ATP-binding subunit ClpX [Sinorhizobium
           medicae WSM419]
 gi|166215207|sp|A6U7U8|CLPX_SINMW RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|150027611|gb|ABR59728.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sinorhizobium
           medicae WSM419]
          Length = 425

 Score = 40.4 bits (93), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  +++ VGP G GKT LAQ +AR + V F       + +AG +   + N+         
Sbjct: 113 AKSNIMLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 172

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDE+ ++S
Sbjct: 173 YNVERAQRGIVYIDEVDKIS 192


>gi|6942107|gb|AAF32319.1|AF218420_2 ClpX [Brucella abortus]
          Length = 423

 Score = 40.4 bits (93), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 13/79 (16%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L VGP G GKT LAQ +AR + V F       + +AG +   + N+         
Sbjct: 112 AKSNILLVGPTGCGKTYLAQTLARIIDVPFIMADATTLTEAGYVGEDVENIILKLLQAAD 171

Query: 104 ----EDRDVLFIDEIHRLS 118
                 R +++IDE+ ++S
Sbjct: 172 YNVERARSIVYIDEVDKIS 190


>gi|56478266|ref|YP_159855.1| ATP-dependent protease ATP-binding subunit ClpX [Aromatoleum
           aromaticum EbN1]
 gi|62286505|sp|Q5P160|CLPX_AZOSE RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|56314309|emb|CAI08954.1| ATP-dependent Clp protease ATP-binding,subunit clpX [Aromatoleum
           aromaticum EbN1]
          Length = 422

 Score = 40.4 bits (93), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 49/112 (43%), Gaps = 25/112 (22%)

Query: 32  GQVEACSNLKVFIEAAKARAEALD-----------HVLFVGPPGLGKTTLAQVVARELGV 80
           GQ +A  NL V +     R   L            ++L +GP G GKT LAQ +AR L V
Sbjct: 80  GQTQAKRNLSVAVYNHYKRLRHLSGRKEEVELSKSNILLIGPTGSGKTLLAQTLARLLNV 139

Query: 81  NFRSTSGPVIAKAGDLAALLTNL-------EDRDV-------LFIDEIHRLS 118
            F       + +AG +   + N+        D DV       ++IDEI ++S
Sbjct: 140 PFVMADATTLTEAGYVGEDVENIIQKLLQKCDYDVDKAQHGIVYIDEIDKIS 191


>gi|85115272|ref|XP_964849.1| hypothetical protein NCU08641 [Neurospora crassa OR74A]
 gi|28926644|gb|EAA35613.1| predicted protein [Neurospora crassa OR74A]
          Length = 718

 Score = 40.4 bits (93), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 65/147 (44%), Gaps = 23/147 (15%)

Query: 43  FIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN-FRSTSGPVIAKAGDLAALLT 101
           F +  K + + L  VL  GPPG+GKT  A+ VA  +    +  +SG +   + +L A LT
Sbjct: 481 FDDIVKGKGQGLVCVLH-GPPGVGKTLTAECVAEYVQRPLYMVSSGDLGCVSSELDAQLT 539

Query: 102 NLED-----RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFT- 155
            + D     R VL IDE     I +E+    A+ D   + MV       SV + +  +  
Sbjct: 540 QIMDMTATWRAVLLIDEA---DIFLEQ---RALHDLHRNAMV-------SVFLRVLEYYT 586

Query: 156 --LIAATTRVGLLTNPLQDRFGIPIRL 180
             L   T RV       + R  IPIR 
Sbjct: 587 GILFLTTNRVTTFDEAFKSRIHIPIRY 613


>gi|326429717|gb|EGD75287.1| replication factor C subunit 5 [Salpingoeca sp. ATCC 50818]
          Length = 330

 Score = 40.4 bits (93), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 6/63 (9%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81
          RP +L++     E    ++ F++  +     L H+LF GPPG GKT+  +  A++L G  
Sbjct: 17 RPDSLDQLVSHKEIIDTIQRFVDEKR-----LPHLLFYGPPGTGKTSTIKACAKQLYGKA 71

Query: 82 FRS 84
          ++S
Sbjct: 72 YKS 74


>gi|321458492|gb|EFX69559.1| hypothetical protein DAPPUDRAFT_202764 [Daphnia pulex]
          Length = 697

 Score = 40.4 bits (93), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL VGPPG GKT LA+ VA E GV +   +GP
Sbjct: 294 VLLVGPPGTGKTLLARAVAGEAGVPYFHAAGP 325


>gi|262368512|ref|ZP_06061841.1| methanol dehydrogenase regulatory protein [Acinetobacter johnsonii
           SH046]
 gi|262316190|gb|EEY97228.1| methanol dehydrogenase regulatory protein [Acinetobacter johnsonii
           SH046]
          Length = 318

 Score = 40.4 bits (93), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 60/135 (44%), Gaps = 24/135 (17%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEAL------DHVLFVGPPGLGKT 68
           +++ +S+  P+ ++EF  QV      ++ ++  +    AL       H+LF   PGLGKT
Sbjct: 18  DESQLSVFYPK-IQEFLNQVN-----QIILDKNQQTQLALCSLLAGGHILFEDLPGLGKT 71

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDL--AALLTNLEDR----------DVLFIDEIHR 116
           TLA  +A   G+ F+         A D+    +    E R           +L  DEI+R
Sbjct: 72  TLASSLAHLAGLQFKRIQFTNDMLASDVIGVNMFNQKEHRFEFKQGPIFTQILLADEINR 131

Query: 117 LSIIVEEILYPAMED 131
            S   +  L  AME+
Sbjct: 132 CSPKTQSALLEAMEE 146


>gi|242049964|ref|XP_002462726.1| hypothetical protein SORBIDRAFT_02g030960 [Sorghum bicolor]
 gi|241926103|gb|EER99247.1| hypothetical protein SORBIDRAFT_02g030960 [Sorghum bicolor]
          Length = 885

 Score = 40.4 bits (93), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 84/187 (44%), Gaps = 26/187 (13%)

Query: 43  FIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKAGDLAALL 100
           ++   K + +A   VL FVGPPG+GKT+LA  +A+ L   F R + G V  +A       
Sbjct: 390 YLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIAKALNRKFIRISLGGVKDEADIRGHRR 449

Query: 101 TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSA---------------- 144
           T +       ID + R+S+    +L   ++    D+  G+  SA                
Sbjct: 450 TYIGSMPGRLIDGLKRVSVSNPVMLLDEIDKTGSDVR-GDPASALLEVLDPEQNKAFNDH 508

Query: 145 -RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED-----LKTIVQRGAKL 198
             +V  +LS+   +A   R+  +  PL DR  + I L  Y  E+     +K ++ R  + 
Sbjct: 509 YLNVPFDLSKVIFVATANRMQPIPPPLLDRMEV-IELPGYTPEEKLKIAMKHLIPRVLEQ 567

Query: 199 TGLAVTD 205
            GL++T+
Sbjct: 568 HGLSMTN 574


>gi|239916685|ref|YP_002956243.1| membrane protease FtsH catalytic subunit [Micrococcus luteus NCTC
           2665]
 gi|281414857|ref|ZP_06246599.1| membrane protease FtsH catalytic subunit [Micrococcus luteus NCTC
           2665]
 gi|239837892|gb|ACS29689.1| membrane protease FtsH catalytic subunit [Micrococcus luteus NCTC
           2665]
          Length = 696

 Score = 40.4 bits (93), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 202 VLLYGPPGTGKTLLAKAVAGEAGVPFYSISG 232


>gi|170049163|ref|XP_001854132.1| katanin p60 ATPase-containing subunit [Culex quinquefasciatus]
 gi|167871046|gb|EDS34429.1| katanin p60 ATPase-containing subunit [Culex quinquefasciatus]
          Length = 553

 Score = 40.4 bits (93), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108
           VL VGPPG GKT LA+ VA E G  F + S   +     G+   L      +        
Sbjct: 311 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPST 370

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 371 IFIDEIDSL 379


>gi|168009415|ref|XP_001757401.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162691524|gb|EDQ77886.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 373

 Score = 40.4 bits (93), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA-----KAGDLAALLTNLEDR---DV 108
           +L  GPPG GKT LA+ VA E G NF + S   IA     +A      +  L  +    V
Sbjct: 107 LLLFGPPGTGKTMLAKAVATEAGANFINISMSTIASKWFGEAEKYVKAVFTLASKISPSV 166

Query: 109 LFIDEIHRL 117
           +FIDE+  +
Sbjct: 167 IFIDEVDSM 175


>gi|145499016|ref|XP_001435494.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124402627|emb|CAK68097.1| unnamed protein product [Paramecium tetraurelia]
          Length = 443

 Score = 40.4 bits (93), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 80/186 (43%), Gaps = 21/186 (11%)

Query: 43  FIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVNFRSTSGPVIAK-AGDLAALL 100
           F E A+   +    +L  GPPG GKT LA+  A E  G  F  +S  +I+K  G+   L+
Sbjct: 168 FFEGARTPWKG---ILMYGPPGTGKTYLAKACATEAEGTFFSVSSADLISKYVGESEKLI 224

Query: 101 TNL------EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV---GEGPSARSVKINL 151
             L      +   ++FIDEI  +     E    A      + +V   G G   + V +  
Sbjct: 225 KTLFTMAREQKPSIIFIDEIDSMCGARGEGQNDASRRVITEFLVQMQGVGHDDKGVLV-- 282

Query: 152 SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEI 211
                + AT     L   ++ RF   I +   +++  + ++Q   K T   +T E   ++
Sbjct: 283 -----LGATNLPWALDTAIRRRFEKRIYIPLPDVQAREYMIQNSLKQTKTTLTKEQFEDL 337

Query: 212 AMRSRG 217
           A+++ G
Sbjct: 338 AVKTEG 343


>gi|121707797|ref|XP_001271944.1| AAA family ATPase Pontin, putative [Aspergillus clavatus NRRL 1]
 gi|119400092|gb|EAW10518.1| AAA family ATPase Pontin, putative [Aspergillus clavatus NRRL 1]
          Length = 458

 Score = 40.4 bits (93), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 33/65 (50%), Gaps = 5/65 (7%)

Query: 22 LRP-----RTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
          LRP     +T + F GQ  A     V ++  KA+  A   VL  G PG GKT LA  V++
Sbjct: 27 LRPDGTAEQTADGFVGQASAREACGVVVDLIKAKKMAGRAVLLAGGPGTGKTALALAVSQ 86

Query: 77 ELGVN 81
          ELG  
Sbjct: 87 ELGTK 91


>gi|116251455|ref|YP_767293.1| ATP-dependent protease ATP-binding subunit ClpX [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|241204074|ref|YP_002975170.1| ATP-dependent protease ATP-binding subunit ClpX [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|166214809|sp|Q1MIM6|CLPX_RHIL3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|115256103|emb|CAK07184.1| putative ATP-dependent Clp protease ATP-binding subunit ClpX
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|240857964|gb|ACS55631.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 425

 Score = 40.4 bits (93), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  +++ VGP G GKT LAQ +AR + V F       + +AG +   + N+         
Sbjct: 113 AKSNIMLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQSAD 172

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDE+ ++S
Sbjct: 173 YNVERAQRGIVYIDEVDKIS 192


>gi|86357225|ref|YP_469117.1| ATP-dependent protease ATP-binding subunit [Rhizobium etli CFN 42]
 gi|190891273|ref|YP_001977815.1| ATP-dependent Clp protease, ATP-binding subunit [Rhizobium etli
           CIAT 652]
 gi|123512322|sp|Q2K9U6|CLPX_RHIEC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238692521|sp|B3PVY5|CLPX_RHIE6 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|86281327|gb|ABC90390.1| ATP-dependent Clp protease, ATP-binding subunit protein [Rhizobium
           etli CFN 42]
 gi|190696552|gb|ACE90637.1| ATP-dependent Clp protease protein, ATP-binding subunit [Rhizobium
           etli CIAT 652]
 gi|327188466|gb|EGE55680.1| ATP-dependent protease ATP-binding subunit [Rhizobium etli
           CNPAF512]
          Length = 425

 Score = 40.4 bits (93), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  +++ VGP G GKT LAQ +AR + V F       + +AG +   + N+         
Sbjct: 113 AKSNIMLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 172

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDE+ ++S
Sbjct: 173 YNVERAQRGIVYIDEVDKIS 192


>gi|73984472|ref|XP_533718.2| PREDICTED: similar to RuvB-like protein 1 isoform 1 [Canis
          familiaris]
          Length = 471

 Score = 40.4 bits (93), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 31/62 (50%)

Query: 18 DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
          D S L  +      GQ  A     V +E  K++  A   VL  GPPG GKT LA  +A+E
Sbjct: 27 DESGLAKQAASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQE 86

Query: 78 LG 79
          LG
Sbjct: 87 LG 88


>gi|68160836|gb|AAY86864.1| lr1227 [Lactobacillus reuteri]
          Length = 551

 Score = 40.4 bits (93), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 44/89 (49%), Gaps = 11/89 (12%)

Query: 34  VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK- 92
           VE   N K F    K  A     VL  GPPG GKT LA+ VA E GV F S SG    + 
Sbjct: 211 VEFLKNPKKF---TKLGARIPSGVLLEGPPGTGKTLLAKAVAGESGVPFFSISGSDFVEM 267

Query: 93  -AGDLAALLTNLEDR------DVLFIDEI 114
             G  A+ + +L D+       ++FIDEI
Sbjct: 268 FVGVGASRVRDLFDQAKKAAPAIIFIDEI 296


>gi|331082572|ref|ZP_08331697.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330400550|gb|EGG80180.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 436

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 28/130 (21%)

Query: 17  ADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEA---------LDHVLFVGP 62
            +I+LL+P+ ++E       GQ EA   L V +     R  +           ++L +GP
Sbjct: 60  GEINLLKPQEIKEILDEYVIGQDEAKKVLSVAVYNHYKRVLSGGNTDVELQKSNILMLGP 119

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRD-------V 108
            G GKT LAQ +AR L V F       + +AG +   + N+        D D       +
Sbjct: 120 TGSGKTLLAQTLARLLNVPFAIADATTLTEAGYVGEDVENILLKIIQAADYDIERAQYGI 179

Query: 109 LFIDEIHRLS 118
           ++IDEI +++
Sbjct: 180 IYIDEIDKIT 189


>gi|322517186|ref|ZP_08070069.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           vestibularis ATCC 49124]
 gi|322124245|gb|EFX95761.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           vestibularis ATCC 49124]
          Length = 408

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +AR L V F       + +AG    D+  +L  L        
Sbjct: 112 NILMIGPTGSGKTFLAQTLARSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADFNI 171

Query: 104 --EDRDVLFIDEIHRLS 118
              +R ++++DEI +++
Sbjct: 172 ERAERGIIYVDEIDKIA 188


>gi|319408365|emb|CBI82018.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bartonella
           schoenbuchensis R1]
          Length = 424

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L VGP G GKT LAQ +AR + V F       + +AG +   + N+            
Sbjct: 115 NILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNV 174

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDE+ ++S
Sbjct: 175 ERAQRGIVYIDEVDKIS 191


>gi|319654928|ref|ZP_08009002.1| cell division protein ftsH [Bacillus sp. 2_A_57_CT2]
 gi|317393353|gb|EFV74117.1| cell division protein ftsH [Bacillus sp. 2_A_57_CT2]
          Length = 663

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+  A E GV F S SG       V   A  +  L  N +     +
Sbjct: 198 VLLVGPPGTGKTLLARAAAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 257

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 258 IFIDEI 263


>gi|312869843|ref|ZP_07729984.1| ATP-dependent metallopeptidase HflB [Lactobacillus oris PB013-T2-3]
 gi|311094622|gb|EFQ52925.1| ATP-dependent metallopeptidase HflB [Lactobacillus oris PB013-T2-3]
          Length = 709

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           VL  GPPG GKT LA+ VA E GV F S SG    +   G  A+ + +L D+       +
Sbjct: 229 VLLEGPPGTGKTLLAKAVAGESGVPFFSISGSDFVEMFVGVGASRVRDLFDQAKKAAPAI 288

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 289 IFIDEI 294


>gi|307197462|gb|EFN78696.1| Paraplegin [Harpegnathos saltator]
          Length = 708

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 95/219 (43%), Gaps = 32/219 (14%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAKAGDLAA-----LLTNLEDR--DVL 109
           L +GPPG GKT LA+ VA E  V F S +G   I   G L A     L    + R   ++
Sbjct: 278 LLLGPPGCGKTLLAKAVATEASVPFLSMNGSEFIEVFGGLGAARVRDLFKEAKKRAPSII 337

Query: 110 FIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVK---------INLSRFTLIAAT 160
           +IDEI  +             D  L ++  E  S R++          I+     ++A+T
Sbjct: 338 YIDEIDAIG--------KKRSDNSLGIINSE--SERTLNQLLVEMDGMISKEDVIILAST 387

Query: 161 TRVGLLTNPL--QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGT 218
            R  +L   L    RF   I ++F  +E+ + I +    L  +++ +E +      +  T
Sbjct: 388 NRADVLDKALLRPGRFDRHILIDFPTLEERQQIFE--THLKKISLKNEPSKYSGYLAYLT 445

Query: 219 PRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257
           P  +G  +  V + A + HA    ++  D+  L  AID+
Sbjct: 446 PGFSGADIANVCNEAAL-HAARDKKKQVDSNDLMYAIDR 483


>gi|282163543|ref|YP_003355928.1| putative AAA ATPase [Methanocella paludicola SANAE]
 gi|282155857|dbj|BAI60945.1| putative AAA ATPase [Methanocella paludicola SANAE]
          Length = 322

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 77/178 (43%), Gaps = 36/178 (20%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRS------------TSGPVIAKAG-----DLAA 98
           +++  G PG+ KTT+A+V A   G+NF+             T GPV  +           
Sbjct: 50  NIMLEGVPGVAKTTIAKVFAASTGLNFKRIQFVPDIMPSDITGGPVFNQKTMEFNVYKGP 109

Query: 99  LLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSR-FTLI 157
           + TNL     L  DEI+R S  ++  L  AME+ Q+        S   V   L   F +I
Sbjct: 110 IFTNL-----LLADEINRASPKIQSSLLEAMEEKQV--------SINGVAYPLPEPFMVI 156

Query: 158 AATTRVGLL-TNPLQ----DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACE 210
           A    + ++ T PL     DRF   + +++ + +D   +++     +G+ + D    E
Sbjct: 157 ATENPIDIIGTFPLPEAQIDRFMFKLDIDYPDNDDELALLKSKNAGSGVNIEDALNSE 214


>gi|259501964|ref|ZP_05744866.1| cell division protein FtsH [Lactobacillus antri DSM 16041]
 gi|259170141|gb|EEW54636.1| cell division protein FtsH [Lactobacillus antri DSM 16041]
          Length = 706

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           VL  GPPG GKT LA+ VA E GV F S SG    +   G  A+ + +L D+       +
Sbjct: 229 VLLEGPPGTGKTLLAKAVAGESGVPFFSISGSDFVEMFVGVGASRVRDLFDQAKKAAPAI 288

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 289 IFIDEI 294


>gi|240171031|ref|ZP_04749690.1| DNA polymerase III subunits gamma and tau [Mycobacterium kansasii
          ATCC 12478]
          Length = 598

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 6/68 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
          RP T  E  GQ      L + +EA +     ++H  LF GP G GKT+ A+++AR L   
Sbjct: 8  RPATFAEVVGQEHVTEPLSIALEAGR-----INHAYLFSGPRGCGKTSSARILARSLNCA 62

Query: 82 FRSTSGPV 89
             T+ P 
Sbjct: 63 QGPTATPC 70


>gi|222085565|ref|YP_002544095.1| ATP-dependent Clp protease [Agrobacterium radiobacter K84]
 gi|221723013|gb|ACM26169.1| ATP-dependent Clp protease [Agrobacterium radiobacter K84]
          Length = 470

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  +++ VGP G GKT LAQ +AR + V F       + +AG +   + N+         
Sbjct: 158 AKSNIMLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 217

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDE+ ++S
Sbjct: 218 YNVERAQRGIVYIDEVDKIS 237


>gi|220911094|ref|YP_002486403.1| ATP-dependent metalloprotease FtsH [Arthrobacter chlorophenolicus
           A6]
 gi|219857972|gb|ACL38314.1| ATP-dependent metalloprotease FtsH [Arthrobacter chlorophenolicus
           A6]
          Length = 687

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 4/58 (6%)

Query: 34  VEACSNLKVFI-EAAKARA---EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VE    +K F+ E AK +A   +    VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 177 VEELQEIKEFLQEPAKFQAVGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISG 234


>gi|213692574|ref|YP_002323160.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|213524035|gb|ACJ52782.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|320458726|dbj|BAJ69347.1| ATP-dependent Clp protease ATP-binding subunit [Bifidobacterium
           longum subsp. infantis ATCC 15697]
          Length = 459

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---ED 105
           A  ++L +GP G+GKT LAQ +AR + V F  T    + +AG    D+  +L  L    D
Sbjct: 146 AKSNILLLGPTGVGKTYLAQALARVMNVPFVITDATTLTEAGYVGDDVETVLQRLLQAAD 205

Query: 106 RDV-------LFIDEIHRLS 118
            DV       ++IDEI +++
Sbjct: 206 GDVSRAQHGIIYIDEIDKIA 225


>gi|254458150|ref|ZP_05071576.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Campylobacterales bacterium GD 1]
 gi|207084986|gb|EDZ62272.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Campylobacterales bacterium GD 1]
          Length = 414

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---ED 105
           A  +VL +GP G GKT +AQ +AR L V         + +AG    D+  +LT L    D
Sbjct: 110 AKSNVLLIGPTGSGKTLMAQTIARVLNVPIAIADATSLTEAGYVGEDVENILTKLIQAAD 169

Query: 106 RDV-------LFIDEIHRLS 118
            DV       +FIDE+ ++S
Sbjct: 170 GDVERAQQGIVFIDEVDKVS 189


>gi|254432500|ref|ZP_05046203.1| cell division protein FtsH [Cyanobium sp. PCC 7001]
 gi|197626953|gb|EDY39512.1| cell division protein FtsH [Cyanobium sp. PCC 7001]
          Length = 644

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL VGPPG GKT LA+ +A E GV F S SG    +   G  A+ + +L  R       +
Sbjct: 217 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFVEMFVGVGASRVRDLFKRAKENSPCL 276

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 277 IFIDEI 282


>gi|220909725|ref|YP_002485036.1| ATP-dependent protease ATP-binding subunit ClpX [Cyanothece sp. PCC
           7425]
 gi|219866336|gb|ACL46675.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Cyanothece
           sp. PCC 7425]
          Length = 447

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+            
Sbjct: 137 NILLIGPTGCGKTLLAQTLARMLDVPFAVADATTLTEAGYVGEDVENILLRLLQVSDLDV 196

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI +++
Sbjct: 197 EQAQRGIIYIDEIDKIA 213


>gi|194757108|ref|XP_001960807.1| GF11321 [Drosophila ananassae]
 gi|190622105|gb|EDV37629.1| GF11321 [Drosophila ananassae]
          Length = 740

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 34/71 (47%), Gaps = 9/71 (12%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
           T E+  G  EA   LK  +E  K   E   +        VL VGPPG GKT LA+ VA E
Sbjct: 302 TFEDVKGCDEAKQELKEVVEFLK-NPEKFSNLGGKLPKGVLLVGPPGTGKTLLARAVAGE 360

Query: 78  LGVNFRSTSGP 88
             V F   +GP
Sbjct: 361 AKVPFFHAAGP 371


>gi|167999145|ref|XP_001752278.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162696673|gb|EDQ83011.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 334

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA-----KAGDLAALLTNLEDR---DV 108
           +L  GPPG GKT LA+ VA E G NF + S   IA     +A      +  L  +    V
Sbjct: 66  LLLFGPPGTGKTMLAKAVATEAGANFINISMSTIASKWFGEAEKYVKAVFTLASKISPSV 125

Query: 109 LFIDEIHRL 117
           +FIDE+  +
Sbjct: 126 IFIDEVDSM 134


>gi|170744864|ref|YP_001773519.1| ATPase central domain-containing protein [Methylobacterium sp.
           4-46]
 gi|168199138|gb|ACA21085.1| AAA ATPase central domain protein [Methylobacterium sp. 4-46]
          Length = 354

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 57/118 (48%), Gaps = 28/118 (23%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALD----------HVLFVGPPGLGKTTLAQVVA 75
           +L+   G  E  + L+  IE  K  A   D          H++F GPPG+GKT +A++  
Sbjct: 92  SLDRLIGLAEVKAELRTLIERLKVEAARRDAGMRVSPLSLHMVFTGPPGVGKTVVARLYG 151

Query: 76  ---RELGVNFRSTSGPVIA--KAGDLAALL--TNLEDRD--------VLFIDEIHRLS 118
              RELGV     SG ++   ++G +A  +  T L+ R         VLFIDE + L+
Sbjct: 152 AALRELGV---LESGHIVETDRSGLVAGYVGQTALKTRQRIAEALDGVLFIDEAYALA 206


>gi|148239552|ref|YP_001224939.1| cell division protein FtsH [Synechococcus sp. WH 7803]
 gi|147848091|emb|CAK23642.1| Cell division protein FtsH [Synechococcus sp. WH 7803]
          Length = 637

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 217 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSG 247


>gi|148269390|ref|YP_001243850.1| DNA polymerase III, subunits gamma and tau [Thermotoga petrophila
           RKU-1]
 gi|147734934|gb|ABQ46274.1| DNA polymerase III, subunits gamma and tau [Thermotoga petrophila
           RKU-1]
          Length = 478

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 93/237 (39%), Gaps = 43/237 (18%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  E   Q     ++K  I  A  +       +F GP G GKTTLA+++A+ L    
Sbjct: 9   RPKTFSEVVNQ----DHVKKAIIGAIQKNSVAHGYIFAGPRGTGKTTLARILAKSLNCEN 64

Query: 83  RSTSGPV----IAKAGDLAALLTNLE-----DRDVLFIDEIHRLS--------------I 119
           R    P       +  D    +  +E     +R    IDEI R+                
Sbjct: 65  RKGVEPCNSCRACREIDEGTFMDVIELDAASNRG---IDEIRRIRDAVGYRPMEGKYKVY 121

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           I++E+     E F   L   E P +  V         + ATT +  +   +  R  +   
Sbjct: 122 IIDEVHMLTKEAFNALLKTLEEPPSHVV--------FVLATTNLEKVPPTIISRCQV--- 170

Query: 180 LNFYEIED--LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
             F  I D  ++  +Q  A+  G+ +  EA   IA R+ G  R A  +L +V  F+E
Sbjct: 171 FEFRNIPDELIEKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWKFSE 227


>gi|118619468|ref|YP_907800.1| DNA polymerase III subunits gamma and tau [Mycobacterium ulcerans
          Agy99]
 gi|118571578|gb|ABL06329.1| DNA polymerase III (subunit gamma/tau) DnaZX [Mycobacterium
          ulcerans Agy99]
          Length = 621

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 6/68 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
          RP T  E  GQ      L + +EA +     ++H  LF GP G GKT+ A+++AR L   
Sbjct: 8  RPATFAEVVGQEHVTEPLSIALEAGR-----INHAYLFSGPRGCGKTSSARILARSLNCA 62

Query: 82 FRSTSGPV 89
             T+ P 
Sbjct: 63 QGPTATPC 70


>gi|109075578|ref|XP_001104047.1| PREDICTED: spermatogenesis-associated protein 5-like isoform 2
           [Macaca mulatta]
          Length = 789

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALL------TNLEDRDV 108
           VL  GPPG GKT +A+ VA E+G      +GP +I+K  G+  A L        L    +
Sbjct: 389 VLLYGPPGTGKTMIARAVANEVGAYVSVINGPEIISKFYGETEAKLRQIFAEATLRHPSI 448

Query: 109 LFIDEIHRLS 118
           +FIDE+  L 
Sbjct: 449 IFIDELDALC 458



 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 15/32 (46%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG  KT +A+ +A E G+NF +  GP
Sbjct: 663 ILLYGPPGCSKTMIAKALANESGLNFLAIKGP 694


>gi|91793846|ref|YP_563497.1| ATP-dependent protease ATP-binding subunit [Shewanella
           denitrificans OS217]
 gi|123060778|sp|Q12LA2|CLPX_SHEDO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|91715848|gb|ABE55774.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Shewanella
           denitrificans OS217]
          Length = 426

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LA+ +AR L V F       + +AG +   + N+            
Sbjct: 115 NILLIGPTGSGKTLLAETLARSLNVPFAMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 174

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 175 EKAQRGIVYIDEIDKIS 191


>gi|57524964|ref|NP_001006138.1| ruvB-like 1 [Gallus gallus]
 gi|53136380|emb|CAG32519.1| hypothetical protein RCJMB04_28a17 [Gallus gallus]
          Length = 456

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 22/45 (48%), Positives = 27/45 (60%), Gaps = 3/45 (6%)

Query: 35 EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
          EAC    V +E  K++  A   VL  GPPG GKT LA  +A+ELG
Sbjct: 47 EACG---VIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88


>gi|50307971|ref|XP_453984.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49643119|emb|CAG99071.1| KLLA0E00837p [Kluyveromyces lactis]
          Length = 814

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 551 VLLWGPPGCGKTLLAKAVANESRANFISIKGP 582



 Score = 38.5 bits (88), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL  GPPG GKT++A  +A EL V F S S P +
Sbjct: 236 VLLHGPPGCGKTSIANALAGELQVPFISISAPSV 269


>gi|325292626|ref|YP_004278490.1| ATP-dependent clp protease ATP-binding subunit ClpX [Agrobacterium
           sp. H13-3]
 gi|325060479|gb|ADY64170.1| ATP-dependent clp protease ATP-binding subunit ClpX [Agrobacterium
           sp. H13-3]
          Length = 425

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  +++ VGP G GKT LAQ +AR + V F       + +AG +   + N+         
Sbjct: 113 AKSNIMLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 172

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDE+ ++S
Sbjct: 173 YNVERAQRGIVYIDEVDKIS 192


>gi|315640558|ref|ZP_07895666.1| cell division protein FtsH [Enterococcus italicus DSM 15952]
 gi|315483762|gb|EFU74250.1| cell division protein FtsH [Enterococcus italicus DSM 15952]
          Length = 699

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           VL  GPPG GKT LA+ VA E GV F S SG    +   G  A+ + +L D        +
Sbjct: 239 VLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFDTAKKNAPAI 298

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 299 IFIDEI 304


>gi|292655481|ref|YP_003535378.1| cell division control protein 48 [Haloferax volcanii DS2]
 gi|291370782|gb|ADE03009.1| cell division control protein 48 [Haloferax volcanii DS2]
          Length = 736

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT LA+ +A E GVNF   +GP
Sbjct: 514 LLLHGPPGTGKTMLARAIAAESGVNFIHVAGP 545



 Score = 39.7 bits (91), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 23/34 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL  GPPG GKT +A+ VA E+  +F + SGP +
Sbjct: 241 VLLHGPPGTGKTLIAKAVANEVDASFTTISGPEV 274


>gi|238882613|gb|EEQ46251.1| ribosome biogenesis ATPase RIX7 [Candida albicans WO-1]
          Length = 827

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 559 VLMWGPPGCGKTLLAKAVANESRANFISIKGP 590



 Score = 39.7 bits (91), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL  GPPG GKTT+A  +A EL V F + S P +
Sbjct: 230 VLLYGPPGCGKTTIANALAGELKVPFINISAPSV 263


>gi|225874967|ref|YP_002756426.1| endopeptidase LA [Acidobacterium capsulatum ATCC 51196]
 gi|225793844|gb|ACO33934.1| endopeptidase LA [Acidobacterium capsulatum ATCC 51196]
          Length = 815

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 73/166 (43%), Gaps = 41/166 (24%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           + FVGPPG+GKT+L   +A+  G  F R + G V  +A              G +   + 
Sbjct: 362 LCFVGPPGVGKTSLGMSIAKATGRKFVRLSLGGVRDEAEIRGHRRTYIGALPGQIIQSMK 421

Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYP----AMEDFQLDLMVGEGPSARSVK 148
               R+ V+ +DEI +++            E+L P      +D  LD           V+
Sbjct: 422 KAGTRNPVMMLDEIDKMASDFRGDPASALLEVLDPEQNSTFQDHYLD-----------VE 470

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY-EIEDLKTIVQ 193
            +LS+   +A    +  +  PLQDR  I +RL+ Y E+E L+   Q
Sbjct: 471 YDLSQVLFVATANVLHTIPAPLQDRMEI-LRLHGYTEVEKLEIAKQ 515


>gi|221635848|ref|YP_002523724.1| cell division protein FtsH [Thermomicrobium roseum DSM 5159]
 gi|310943102|sp|B9L3S8|FTSH2_THERP RecName: Full=ATP-dependent zinc metalloprotease FtsH 2
 gi|221157798|gb|ACM06916.1| cell division protein FtsH [Thermomicrobium roseum DSM 5159]
          Length = 699

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           VL VGPPG GKT LA+ VA E GV F S S     +   G  A+ + +L +R       +
Sbjct: 287 VLLVGPPGTGKTLLARAVAGEAGVPFFSVSASEFVEMFVGVGASRVRDLFERAKAQAPSI 346

Query: 109 LFIDEI 114
           +FIDE+
Sbjct: 347 IFIDEL 352


>gi|166364178|ref|YP_001656451.1| cell division protein [Microcystis aeruginosa NIES-843]
 gi|166086551|dbj|BAG01259.1| cell division protein [Microcystis aeruginosa NIES-843]
          Length = 631

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL +GPPG GKT LA+ +A E GV F S SG
Sbjct: 213 VLLIGPPGTGKTLLAKAIAGEAGVPFFSISG 243


>gi|168033123|ref|XP_001769066.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162679700|gb|EDQ66144.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 966

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 36/69 (52%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           VL  GPPG GKT LA+ +A E GV F   +G    +   G  AA + +L  R       V
Sbjct: 458 VLLEGPPGCGKTLLAKAIAGEAGVPFYQMAGSEFVEVLVGVGAARIRDLFKRAKVNRPSV 517

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 518 VFIDEIDAL 526


>gi|156044192|ref|XP_001588652.1| hypothetical protein SS1G_10199 [Sclerotinia sclerotiorum 1980]
 gi|154694588|gb|EDN94326.1| hypothetical protein SS1G_10199 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 781

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 543 VLLWGPPGCGKTLLAKAVANESKANFISIKGP 574



 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDRD------V 108
           VL  GPPG GKT +A   A E+GV+F   S P  V   +G+    + ++ D        +
Sbjct: 227 VLLHGPPGCGKTMIANAFAAEIGVSFIPISAPSLVAGMSGESEKKIRDVFDEAKRMAPCL 286

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 287 VFIDEI 292


>gi|72383093|ref|YP_292448.1| ATP-dependent protease ATP-binding subunit ClpX [Prochlorococcus
           marinus str. NATL2A]
 gi|124026831|ref|YP_001015946.1| ATP-dependent protease ATP-binding subunit [Prochlorococcus marinus
           str. NATL1A]
 gi|123759843|sp|Q46ID3|CLPX_PROMT RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|166214801|sp|A2C5C2|CLPX_PROM1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|72002943|gb|AAZ58745.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Prochlorococcus marinus str. NATL2A]
 gi|123961899|gb|ABM76682.1| Clp protease ATP-binding subunit, ClpX [Prochlorococcus marinus
           str. NATL1A]
          Length = 451

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 61/141 (43%), Gaps = 31/141 (21%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALL----------T 101
           ++L +GP G GKT LAQ +A  L V F       + +AG    D+  +L           
Sbjct: 136 NILLIGPTGCGKTLLAQTLAEMLDVPFAVADATTLTEAGYVGEDVENILLRLLQKADMDV 195

Query: 102 NLEDRDVLFIDEIHRLS------IIVEEILYPAMEDFQLDLMVG-----------EGPSA 144
           +L  R +++IDEI +++       I  ++    ++   L ++ G           + P  
Sbjct: 196 DLAQRGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPYG 255

Query: 145 RSVKINLSRFTLIAATTRVGL 165
            S++I+ S+   I     VGL
Sbjct: 256 DSIQIDTSQILFICGGAFVGL 276


>gi|15888589|ref|NP_354270.1| ATP-dependent protease ATP-binding subunit [Agrobacterium
           tumefaciens str. C58]
 gi|23813866|sp|Q8UFY5|CLPX_AGRT5 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|15156307|gb|AAK87055.1| ATP-dependent Clp protease, ATP-binding subunit [Agrobacterium
           tumefaciens str. C58]
          Length = 425

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  +++ VGP G GKT LAQ +AR + V F       + +AG +   + N+         
Sbjct: 113 AKSNIMLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 172

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDE+ ++S
Sbjct: 173 YNVERAQRGIVYIDEVDKIS 192


>gi|172056096|ref|YP_001812556.1| ATP-dependent metalloprotease FtsH [Exiguobacterium sibiricum
           255-15]
 gi|171988617|gb|ACB59539.1| ATP-dependent metalloprotease FtsH [Exiguobacterium sibiricum
           255-15]
          Length = 668

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+  A E GV F S SG       V   A  +  L  N +     +
Sbjct: 200 VLLVGPPGTGKTLLARAAAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 259

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 260 IFIDEI 265


>gi|68470308|ref|XP_720658.1| hypothetical protein CaO19.11695 [Candida albicans SC5314]
 gi|68470569|ref|XP_720530.1| hypothetical protein CaO19.4219 [Candida albicans SC5314]
 gi|40362746|gb|AAR84642.1| AAA ATPase [Candida albicans]
 gi|46442402|gb|EAL01691.1| hypothetical protein CaO19.4219 [Candida albicans SC5314]
 gi|46442537|gb|EAL01825.1| hypothetical protein CaO19.11695 [Candida albicans SC5314]
          Length = 827

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 559 VLMWGPPGCGKTLLAKAVANESRANFISIKGP 590



 Score = 39.7 bits (91), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL  GPPG GKTT+A  +A EL V F + S P +
Sbjct: 230 VLLYGPPGCGKTTIANALAGELKVPFINISAPSV 263


>gi|329908484|ref|ZP_08274874.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327546711|gb|EGF31662.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 422

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L VGP G GKT LAQ +AR L V F       + +AG +   + N+         
Sbjct: 112 AKSNILLVGPTGSGKTLLAQTLARMLNVPFVIADATTLTEAGYVGEDVENIIQKLLQACN 171

Query: 104 -----EDRDVLFIDEIHRLS 118
                  + +++IDEI ++S
Sbjct: 172 YDVEKAQKGIVYIDEIDKIS 191


>gi|323348569|gb|EGA82813.1| Msp1p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 362

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 34/71 (47%), Gaps = 8/71 (11%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA--------KAGDLAALLTNL 103
           +A   VL  GPPG GKT LA+ +A+E G NF S     I         K  D    L N 
Sbjct: 124 QAPSGVLLYGPPGCGKTMLAKALAKESGANFISIRMSSIMDKWYGESNKIVDAMFSLANK 183

Query: 104 EDRDVLFIDEI 114
               ++FIDEI
Sbjct: 184 LQPCIIFIDEI 194


>gi|318041527|ref|ZP_07973483.1| cell division protein FtsH [Synechococcus sp. CB0101]
          Length = 654

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 217 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSG 247


>gi|307596637|ref|YP_003902954.1| Microtubule-severing ATPase [Vulcanisaeta distributa DSM 14429]
 gi|307551838|gb|ADN51903.1| Microtubule-severing ATPase [Vulcanisaeta distributa DSM 14429]
          Length = 882

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 8/75 (10%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD--LAALLTNLED--RD 107
           E +  +L  GPPG+GKT +A+  A  L  NF   +G  +A+ G    AA++ ++ +  RD
Sbjct: 649 EPIHGILLFGPPGVGKTLVAKATANMLKANFIELNGAELARVGPERAAAVVKDVFNMARD 708

Query: 108 ----VLFIDEIHRLS 118
               ++FIDEI  ++
Sbjct: 709 NAPAIIFIDEIDSVA 723


>gi|296453942|ref|YP_003661085.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Bifidobacterium longum subsp. longum JDM301]
 gi|296183373|gb|ADH00255.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Bifidobacterium longum subsp. longum JDM301]
          Length = 459

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---ED 105
           A  ++L +GP G+GKT LAQ +AR + V F  T    + +AG    D+  +L  L    D
Sbjct: 146 AKSNILLLGPTGVGKTYLAQALARVMNVPFVITDATTLTEAGYVGDDVETVLQRLLQAAD 205

Query: 106 RDV-------LFIDEIHRLS 118
            DV       ++IDEI +++
Sbjct: 206 GDVSRAQHGIIYIDEIDKIA 225


>gi|295694781|ref|YP_003588019.1| ATP-dependent metalloprotease FtsH [Bacillus tusciae DSM 2912]
 gi|295410383|gb|ADG04875.1| ATP-dependent metalloprotease FtsH [Bacillus tusciae DSM 2912]
          Length = 648

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           +L VGPPG GKT LA+ VA E GV F S SG
Sbjct: 197 ILLVGPPGTGKTLLARAVAGEAGVPFFSISG 227


>gi|258544637|ref|ZP_05704871.1| chaperone protein ClpB [Cardiobacterium hominis ATCC 15826]
 gi|258520118|gb|EEV88977.1| chaperone protein ClpB [Cardiobacterium hominis ATCC 15826]
          Length = 412

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 3/65 (4%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIE---AAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           D   ++ R   +  GQ + C +L   +    A   R + +   LF GPPG GKT LA+V+
Sbjct: 101 DAEAVKARLQSQVVGQDQVCHDLAWQLRRRLALTQRNKPVGVFLFAGPPGTGKTWLAKVL 160

Query: 75  ARELG 79
           A+ LG
Sbjct: 161 AQVLG 165


>gi|225691100|gb|ACO06234.1| NBS-LRR disease resistance protein-like protein [Hordeum vulgare]
          Length = 1250

 Score = 40.4 bits (93), Expect = 0.38,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 5/71 (7%)

Query: 18  DISLLRPRTLEE-----FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           DI+  RP+T +E     F G+ +    +  FI   +   + L  V  VGP G+GKTTL Q
Sbjct: 223 DITKNRPKTTQEIVEPEFYGRDDQKKEIVDFITHGEYCKDELTVVPLVGPGGIGKTTLTQ 282

Query: 73  VVARELGVNFR 83
            + REL  +F+
Sbjct: 283 HIYRELEGSFQ 293


>gi|225023958|ref|ZP_03713150.1| hypothetical protein EIKCOROL_00825 [Eikenella corrodens ATCC
           23834]
 gi|224942983|gb|EEG24192.1| hypothetical protein EIKCOROL_00825 [Eikenella corrodens ATCC
           23834]
          Length = 418

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL----- 103
           A  ++L +GP G GKT LAQ +AR L V F       + +AG    D+  ++T L     
Sbjct: 105 AKSNILLIGPTGSGKTLLAQSLARRLDVPFVMADATTLTEAGYVGEDVEQIITKLLGNCD 164

Query: 104 -----EDRDVLFIDEIHRLS 118
                    +++IDEI ++S
Sbjct: 165 FNVEKAQNGIVYIDEIDKIS 184


>gi|195614112|gb|ACG28886.1| FtsH6 - Zea mays FtsH protease
          Length = 691

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 264 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSG 294


>gi|126323252|ref|XP_001376069.1| PREDICTED: similar to protease, serine, 15, [Monodelphis domestica]
          Length = 973

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 87/207 (42%), Gaps = 33/207 (15%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLA 71
           S E+ D++  +    E+  G  +    +  FI  ++ R      +L F GPPG+GKT++A
Sbjct: 491 SNENLDLARAKEVLEEDHYGMEDVKKRILEFIAVSQLRGSTQGKILCFYGPPGVGKTSIA 550

Query: 72  QVVARELGVN-FRSTSGP--------------VIAKAGDLAALLTNLEDRD-VLFIDEIH 115
           + +AR L    FR + G               V A  G +   L   +  + ++ IDE+ 
Sbjct: 551 RSIARALNREYFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLILIDEVD 610

Query: 116 RL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           ++        S  + E+L P      LD  +        V ++LS+   I        + 
Sbjct: 611 KIGRGYQGDPSSALLELLDPEQNSNFLDHYL-------DVPVDLSKVLFICTANVTETIP 663

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQR 194
            PL+DR  + I ++ Y  ++   I +R
Sbjct: 664 EPLRDRMEM-INVSGYVAQEKLAIAER 689


>gi|94264385|ref|ZP_01288176.1| Peptidase S16, ATP-dependent protease La [delta proteobacterium
           MLMS-1]
 gi|93455214|gb|EAT05430.1| Peptidase S16, ATP-dependent protease La [delta proteobacterium
           MLMS-1]
          Length = 802

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 17/30 (56%), Positives = 21/30 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTS 86
           + FVGPPG+GKT+L Q +AR LG  F   S
Sbjct: 367 LCFVGPPGVGKTSLGQSIARALGRKFHRIS 396


>gi|32478843|gb|AAP83638.1| katanin [Gossypium barbadense]
          Length = 521

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLED------RDV 108
           VL  GPPG GKT LA+ VA E G  F + S   +A    G+   ++  L D         
Sbjct: 273 VLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPST 332

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 333 IFIDEIDSL 341


>gi|86607507|ref|YP_476269.1| FtsH family metalloprotease [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86556049|gb|ABD01006.1| metalloprotease, ATP-dependent, FtsH family [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 640

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 207 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSG 237


>gi|50725794|dbj|BAD33324.1| putative Lon protease [Oryza sativa Japonica Group]
 gi|52075953|dbj|BAD46033.1| putative Lon protease [Oryza sativa Japonica Group]
          Length = 880

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 82/182 (45%), Gaps = 22/182 (12%)

Query: 43  FIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKAGDLAALL 100
           ++   K + +A   VL FVGPPG+GKT+LA  +A+ L   F R + G V  +A       
Sbjct: 389 YLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIAKALNRKFIRISLGGVKDEADIRGHRR 448

Query: 101 TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSA-------------RSV 147
           T +       ID + R+S+    +L   ++    D+  G+  SA              +V
Sbjct: 449 TYIGSMPGRLIDGLKRVSVSNPVMLLDEIDKTGSDVR-GDPASALLEVLDPEQNKTYLNV 507

Query: 148 KINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED-----LKTIVQRGAKLTGLA 202
             +LS+   +A   R+  +  PL DR  + I L  Y  E+     +K ++ R  +  GL+
Sbjct: 508 PFDLSKVIFVATANRMQPIPPPLLDRMEV-IELPGYTPEEKLKIAMKHLIPRVLEQHGLS 566

Query: 203 VT 204
            T
Sbjct: 567 ST 568


>gi|6321465|ref|NP_011542.1| Msp1p [Saccharomyces cerevisiae S288c]
 gi|462627|sp|P28737|MSP1_YEAST RecName: Full=Protein MSP1; AltName: Full=Tat-binding homolog 4
 gi|404217|emb|CAA48191.1| MSP1 protein [Saccharomyces cerevisiae]
 gi|531756|emb|CAA56956.1| YTA4 (=MSP1) [Saccharomyces cerevisiae]
 gi|1323004|emb|CAA97015.1| MSP1 [Saccharomyces cerevisiae]
 gi|45269435|gb|AAS56098.1| YGR028W [Saccharomyces cerevisiae]
 gi|151943311|gb|EDN61624.1| 40 kDa membrane-spanning ATPase [Saccharomyces cerevisiae YJM789]
 gi|190406946|gb|EDV10213.1| 40 kDa membrane-spanning ATPase [Saccharomyces cerevisiae RM11-1a]
 gi|207345217|gb|EDZ72108.1| YGR028Wp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|256273852|gb|EEU08773.1| Msp1p [Saccharomyces cerevisiae JAY291]
 gi|259146531|emb|CAY79788.1| Msp1p [Saccharomyces cerevisiae EC1118]
 gi|285812224|tpg|DAA08124.1| TPA: Msp1p [Saccharomyces cerevisiae S288c]
 gi|323309131|gb|EGA62359.1| Msp1p [Saccharomyces cerevisiae FostersO]
 gi|323354997|gb|EGA86828.1| Msp1p [Saccharomyces cerevisiae VL3]
          Length = 362

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 34/71 (47%), Gaps = 8/71 (11%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA--------KAGDLAALLTNL 103
           +A   VL  GPPG GKT LA+ +A+E G NF S     I         K  D    L N 
Sbjct: 124 QAPSGVLLYGPPGCGKTMLAKALAKESGANFISIRMSSIMDKWYGESNKIVDAMFSLANK 183

Query: 104 EDRDVLFIDEI 114
               ++FIDEI
Sbjct: 184 LQPCIIFIDEI 194


>gi|28555882|emb|CAD45024.1| NBS-LRR disease resistance protein homologue [Hordeum vulgare]
          Length = 1280

 Score = 40.4 bits (93), Expect = 0.38,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 5/71 (7%)

Query: 18  DISLLRPRTLEE-----FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           DI+  RP+T +E     F G+ +    +  FI   +   + L  V  VGP G+GKTTL Q
Sbjct: 253 DITKNRPKTTQEIVEPEFYGRDDQKKEIVDFITHGEYCKDELTVVPLVGPGGIGKTTLTQ 312

Query: 73  VVARELGVNFR 83
            + REL  +F+
Sbjct: 313 HIYRELEGSFQ 323


>gi|85108152|ref|XP_962516.1| hypothetical protein NCU08303 [Neurospora crassa OR74A]
 gi|74617090|sp|Q7SA85|LONP2_NEUCR RecName: Full=Lon protease homolog 2, peroxisomal
 gi|28924124|gb|EAA33280.1| hypothetical protein NCU08303 [Neurospora crassa OR74A]
          Length = 937

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 89/222 (40%), Gaps = 48/222 (21%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------------GPVIAKAGDLAALLT 101
           +L VGPPG+GKT+LA+ VA  LG  F   S                 V A  G +   L 
Sbjct: 487 LLLVGPPGVGKTSLARSVATALGRKFHRISLGGVRDEAEIRGHRRTYVAAMPGLIVQGLK 546

Query: 102 NLEDRDVLF-IDEIHRL---------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINL 151
            +   + +F +DEI ++         S  + E+L P       D  V       +V I+L
Sbjct: 547 KVGVANPVFLLDEIDKVGGSSIHGDPSAAMLEVLDPEQNHNFTDHYV-------NVPIDL 599

Query: 152 SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED----LKTIVQRGAKLTGLAVTDEA 207
           S+   IA    +  +  PL DR        +  +E     ++ +V +  ++ GL   DE+
Sbjct: 600 SKVLFIATANSLDTIPAPLLDRMETIYIPGYTTLEKRHIAMRHLVPKQLRVNGL---DES 656

Query: 208 ACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
                     TP +  R+   +  +   A  + + REI+  A
Sbjct: 657 QVSF------TPEVVSRI---IESYTREAGVRNLEREISSVA 689


>gi|313123479|ref|YP_004033738.1| ATP-dependent clp protease ATP-binding subunit clpx [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
 gi|312280042|gb|ADQ60761.1| ATP-dependent Clp protease ATP-binding subunit clpX [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
          Length = 417

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD--------LAALLTNLE--- 104
           ++  +GP G GKT LAQ++AR L V F       + +AG         L  LL N +   
Sbjct: 111 NIALIGPTGSGKTYLAQILARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDL 170

Query: 105 ---DRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 171 ERAQRGIIYIDEIDKIS 187


>gi|301787789|ref|XP_002929310.1| PREDICTED: 26S protease regulatory subunit 10B-like [Ailuropoda
           melanoleuca]
          Length = 403

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 56/124 (45%), Gaps = 23/124 (18%)

Query: 8   LSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV--------L 58
           L  N+S ED  ++S        E  G  E    L+  IE      E    V        L
Sbjct: 132 LVYNMSHEDPGNVSY------SEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCL 185

Query: 59  FVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA-GDLAALLTNLED--RD----VLF 110
             GPPG GKT LA+ VA +L  NF +  S  ++ K  G+ A L+  + +  RD    ++F
Sbjct: 186 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESACLIREMFNYARDHQPCIIF 245

Query: 111 IDEI 114
           +DEI
Sbjct: 246 MDEI 249


>gi|297839905|ref|XP_002887834.1| katanin [Arabidopsis lyrata subsp. lyrata]
 gi|297333675|gb|EFH64093.1| katanin [Arabidopsis lyrata subsp. lyrata]
          Length = 522

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLED------RDV 108
           VL  GPPG GKT LA+ VA E G  F + S   +A    G+   ++  L D         
Sbjct: 274 VLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPST 333

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 334 IFIDEIDSL 342


>gi|239629120|ref|ZP_04672151.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519266|gb|EEQ59132.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 604

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           +L VGPPG GKT LA+ VA E GV F S SG
Sbjct: 196 LLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 226


>gi|241955559|ref|XP_002420500.1| ATPase of the AAA family, putative; ribosome biogenesis ATPase,
           putative; ribosome export protein, putative [Candida
           dubliniensis CD36]
 gi|223643842|emb|CAX41579.1| ATPase of the AAA family, putative [Candida dubliniensis CD36]
          Length = 830

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 562 VLMWGPPGCGKTLLAKAVANESRANFISIKGP 593



 Score = 39.7 bits (91), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL  GPPG GKTT+A  +A EL V F + S P +
Sbjct: 233 VLLYGPPGCGKTTIANALAGELKVPFINISAPSV 266


>gi|213402523|ref|XP_002172034.1| 26S protease regulatory subunit S10B [Schizosaccharomyces japonicus
           yFS275]
 gi|212000081|gb|EEB05741.1| 26S protease regulatory subunit S10B [Schizosaccharomyces japonicus
           yFS275]
          Length = 389

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA-GDLAALLTNL------EDRDV 108
           VL  GPPG GKT LA+ VA  LGVNF +  S  ++ K  G+ A ++  +       +  V
Sbjct: 170 VLLYGPPGTGKTLLARAVASTLGVNFLKVVSSAIVDKYIGESARIIREMFSYAKEHEPCV 229

Query: 109 LFIDEI 114
           +F+DE+
Sbjct: 230 IFMDEV 235


>gi|294658879|ref|XP_461219.2| DEHA2F20086p [Debaryomyces hansenii CBS767]
 gi|202953457|emb|CAG89607.2| DEHA2F20086p [Debaryomyces hansenii]
          Length = 366

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 32/66 (48%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--------AKAGDLAALLTNLEDRDV 108
           VLF GPPG GKT LA+ +A+E G  F S     I         K  D    L N     +
Sbjct: 137 VLFYGPPGCGKTMLAKAIAKESGAFFLSIRMSTIMDKWYGESNKIVDAIFSLANKLQPCI 196

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 197 VFIDEI 202


>gi|186510248|ref|NP_188608.3| ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding
           [Arabidopsis thaliana]
          Length = 1001

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           +L  GPPG GKT LA+ +A E G NF S +G  +     GD   L   L          +
Sbjct: 750 ILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVI 809

Query: 109 LFIDEIHRL 117
           +F+DE+  L
Sbjct: 810 IFVDEVDSL 818


>gi|166031091|ref|ZP_02233920.1| hypothetical protein DORFOR_00776 [Dorea formicigenerans ATCC
           27755]
 gi|166028938|gb|EDR47695.1| hypothetical protein DORFOR_00776 [Dorea formicigenerans ATCC
           27755]
          Length = 607

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--V 108
           +L VGPPG GKT LA+ VA E  V F S SG    +      A  +  L    +++   +
Sbjct: 205 ILLVGPPGTGKTMLAKAVAGEANVPFFSMSGSEFVEMFVGMGASKVRDLFQQAKEKAPCI 264

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 265 VFIDEI 270


>gi|190360157|sp|P0C7N7|RFC2_PHANO RecName: Full=Replication factor C subunit 2; Short=Replication
          factor C2
          Length = 411

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 5/60 (8%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          +   RP+TL E T Q      L   ++++      L H+LF GPPG GKT+    +A++L
Sbjct: 36 VEKYRPKTLSEVTAQDNTIQILSRTLQSSN-----LPHMLFYGPPGTGKTSTILALAKQL 90


>gi|86739914|ref|YP_480314.1| ATP-dependent protease ATP-binding subunit ClpX [Frankia sp. CcI3]
 gi|123751353|sp|Q2JDQ7|CLPX_FRASC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|86566776|gb|ABD10585.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Frankia sp.
           CcI3]
          Length = 428

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 56/132 (42%), Gaps = 34/132 (25%)

Query: 21  LLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEAL---------------DHVLFV 60
           L +PR + EF      GQ  A   L V +     R +A                 ++L +
Sbjct: 61  LPKPREIYEFLDSYVVGQETAKKTLSVAVYNHYKRVQAGGSSGDGSKGEVELAKSNILLL 120

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---EDRDV----- 108
           GP G GKT LAQ +AR L V F       + +AG    D+  +L  L    D DV     
Sbjct: 121 GPTGCGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKKAET 180

Query: 109 --LFIDEIHRLS 118
             ++IDE+ +++
Sbjct: 181 GIIYIDEVDKIA 192


>gi|86157972|ref|YP_464757.1| ATP-dependent protease ATP-binding subunit ClpX [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85774483|gb|ABC81320.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 427

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L VGP G GKT LAQ +AR L V F       + +AG    D+  ++ NL        
Sbjct: 123 NILLVGPTGSGKTLLAQSLARFLNVPFTIADATSLTEAGYVGEDVENIIQNLLHNADYDV 182

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI +++
Sbjct: 183 EKASRGIVYIDEIDKIA 199


>gi|21165879|gb|AAM43608.1|AF479656_1 spermatogenesis associated factor protein [Homo sapiens]
          Length = 790

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALL------TNLEDRDV 108
           VL  GPPG GKT +A+ VA E+G      +GP +I+K  G+  A L        L    +
Sbjct: 390 VLLYGPPGTGKTMIARAVANEVGAYVSVINGPEIISKFYGETEAKLRQIFAEATLRHPSI 449

Query: 109 LFIDEIHRL 117
           +FIDE+  L
Sbjct: 450 IFIDELDAL 458


>gi|148543505|ref|YP_001270875.1| ATP-dependent metalloprotease FtsH [Lactobacillus reuteri DSM
           20016]
 gi|194467680|ref|ZP_03073667.1| ATP-dependent metalloprotease FtsH [Lactobacillus reuteri 100-23]
 gi|227363654|ref|ZP_03847768.1| ATP-dependent metalloprotease FtsH [Lactobacillus reuteri MM2-3]
 gi|325681849|ref|ZP_08161368.1| cell division protein FtsH [Lactobacillus reuteri MM4-1A]
 gi|148530539|gb|ABQ82538.1| membrane protease FtsH catalytic subunit [Lactobacillus reuteri DSM
           20016]
 gi|194454716|gb|EDX43613.1| ATP-dependent metalloprotease FtsH [Lactobacillus reuteri 100-23]
 gi|227071323|gb|EEI09632.1| ATP-dependent metalloprotease FtsH [Lactobacillus reuteri MM2-3]
 gi|324978940|gb|EGC15888.1| cell division protein FtsH [Lactobacillus reuteri MM4-1A]
          Length = 702

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           VL  GPPG GKT LA+ VA E GV F S SG    +   G  A+ + +L D+       +
Sbjct: 231 VLLEGPPGTGKTLLAKAVAGESGVPFFSISGSDFVEMFVGVGASRVRDLFDQAKKAAPAI 290

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 291 IFIDEI 296


>gi|117927947|ref|YP_872498.1| ATP-dependent protease ATP-binding subunit ClpX [Acidothermus
           cellulolyticus 11B]
 gi|166214751|sp|A0LSV2|CLPX_ACIC1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|117648410|gb|ABK52512.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Acidothermus
           cellulolyticus 11B]
          Length = 427

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---ED 105
           A  ++L +GP G GKT LAQ +AR L V F       + +AG    D+  +L  L    D
Sbjct: 112 AKSNILLIGPTGCGKTYLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAAD 171

Query: 106 RDV-------LFIDEIHRLS 118
            DV       ++IDEI +++
Sbjct: 172 YDVKRAETGIIYIDEIDKIA 191


>gi|332642761|gb|AEE76282.1| P-loop containing nucleoside triphosphate hydrolase
           domain-containing protein [Arabidopsis thaliana]
          Length = 993

 Score = 40.4 bits (93), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           +L  GPPG GKT LA+ +A E G NF S +G  +     GD   L   L          +
Sbjct: 742 ILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVI 801

Query: 109 LFIDEIHRL 117
           +F+DE+  L
Sbjct: 802 IFVDEVDSL 810


>gi|319946999|ref|ZP_08021233.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           australis ATCC 700641]
 gi|319747047|gb|EFV99306.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           australis ATCC 700641]
          Length = 410

 Score = 40.4 bits (93), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L VGP G GKT LAQ +A+ L V F       + +AG    D+  +L  L        
Sbjct: 114 NILMVGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNI 173

Query: 104 --EDRDVLFIDEIHRLS 118
              +R ++++DEI +++
Sbjct: 174 ERAERGIIYVDEIDKIA 190


>gi|300913622|ref|ZP_07130939.1| PTS system transcriptional activator [Thermoanaerobacter sp. X561]
 gi|300890307|gb|EFK85452.1| PTS system transcriptional activator [Thermoanaerobacter sp. X561]
          Length = 977

 Score = 40.4 bits (93), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 81/192 (42%), Gaps = 44/192 (22%)

Query: 5   EGLLSRNVSQEDADISLLRPRT---LEEFTGQVEACSNLKVFIEAAKARA----EALDHV 57
           + L+ R+  + D  ++   P+T   L  F   + +  +LKV I  AKA        L H 
Sbjct: 103 DNLVQRSTIKNDT-VNFETPKTAKSLLSFKEIIGSEGSLKVQISLAKAAVLYPPHGL-HT 160

Query: 58  LFVGPPGLGKTTLAQVV---ARELGVNFRSTSGPVIAKAGDLA----------------- 97
           L VGP G GK+ LA+ +   A E G  F   +  V+    D A                 
Sbjct: 161 LIVGPSGSGKSQLAEAMYNYAIESG-RFNENAPFVVFNCADYADNPQLLMAQLFGYVKGA 219

Query: 98  --------ALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKI 149
                   A L    D  +LF+DE+HRL    +EIL+  ++  +   + GE  S R  +I
Sbjct: 220 FTGADTAKAGLVEKADGGILFLDEVHRLPSEGQEILFYLLDKGKFRRL-GETESTREAQI 278

Query: 150 NLSRFTLIAATT 161
                 LIAATT
Sbjct: 279 -----MLIAATT 285


>gi|224096592|ref|XP_002310664.1| predicted protein [Populus trichocarpa]
 gi|222853567|gb|EEE91114.1| predicted protein [Populus trichocarpa]
          Length = 655

 Score = 40.4 bits (93), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           +L  GPPG GKT LA+ +A E G NF S +G  +     GD   L   L          +
Sbjct: 391 ILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVI 450

Query: 109 LFIDEIHRL 117
           +F+DE+  L
Sbjct: 451 IFVDEVDSL 459


>gi|206602655|gb|EDZ39136.1| ClpX, ATPase regulatory subunit [Leptospirillum sp. Group II '5-way
           CG']
          Length = 426

 Score = 40.4 bits (93), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+            
Sbjct: 114 NILMIGPTGTGKTLLAQTLARILEVPFAIADATTLTEAGYVGEDVENIILKLLQAADYDV 173

Query: 104 --EDRDVLFIDEIHRLS 118
              +R +++IDEI ++S
Sbjct: 174 EKAERGIVYIDEIDKIS 190


>gi|212274447|ref|NP_001130462.1| hypothetical protein LOC100191560 [Zea mays]
 gi|194689194|gb|ACF78681.1| unknown [Zea mays]
          Length = 691

 Score = 40.4 bits (93), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 264 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSG 294


>gi|118489540|gb|ABK96572.1| unknown [Populus trichocarpa x Populus deltoides]
          Length = 525

 Score = 40.4 bits (93), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLED------RDV 108
           VL  GPPG GKT LA+ VA E G  F + S   +A    G+   ++  L D         
Sbjct: 277 VLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPST 336

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 337 IFIDEIDSL 345


>gi|159463438|ref|XP_001689949.1| membrane AAA-metalloprotease [Chlamydomonas reinhardtii]
 gi|158283937|gb|EDP09687.1| membrane AAA-metalloprotease [Chlamydomonas reinhardtii]
          Length = 752

 Score = 40.4 bits (93), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 34/66 (51%), Gaps = 10/66 (15%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI---------AKAGDLAALLTNLEDRDV 108
           L VGPPG GKT LA+  A E GV F S SG            A+  DL A     ++  +
Sbjct: 323 LLVGPPGTGKTLLAKATAGEAGVPFLSISGSDFMEMFVGVGPARVRDLFA-QARTQNPSI 381

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 382 IFIDEI 387


>gi|154305492|ref|XP_001553148.1| hypothetical protein BC1G_08515 [Botryotinia fuckeliana B05.10]
 gi|150853302|gb|EDN28494.1| hypothetical protein BC1G_08515 [Botryotinia fuckeliana B05.10]
          Length = 778

 Score = 40.4 bits (93), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 540 VLLWGPPGCGKTLLAKAVANESKANFISIKGP 571



 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDRD------V 108
           VL  GPPG GKT +A   A E+GV+F   S P  V   +G+    + ++ D        +
Sbjct: 224 VLLHGPPGCGKTMIANAFAAEIGVSFIPISAPSLVAGMSGESEKKIRDVFDEAKRMAPCL 283

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 284 VFIDEI 289


>gi|86140704|ref|ZP_01059263.1| ATP-dependent protease ATP-binding subunit [Leeuwenhoekiella
           blandensis MED217]
 gi|85832646|gb|EAQ51095.1| ATP-dependent protease ATP-binding subunit [Leeuwenhoekiella
           blandensis MED217]
          Length = 410

 Score = 40.4 bits (93), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 62/132 (46%), Gaps = 29/132 (21%)

Query: 16  DADISLLRPRTLEEF----------TGQVEACSNLKVFIEAAKARAE-----ALDHVLFV 60
           D D++L +P+ +++F          T +V A +    +    +   E        +++ V
Sbjct: 54  DGDLTLKKPKEIKDFLDEYIIGQDYTKKVMAVAVYNHYKRLLQPETEDDIEIQKSNIVMV 113

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLT--------NLE--DR 106
           G  G GKT +A+ +AR L V        V+ +AG    D+ ++LT        NLE   R
Sbjct: 114 GQTGTGKTLMAKTIARMLNVPLAIVDATVLTEAGYVGEDVESILTRLLQAADYNLEKAQR 173

Query: 107 DVLFIDEIHRLS 118
            ++FIDEI +++
Sbjct: 174 GIVFIDEIDKIA 185


>gi|328951760|ref|YP_004369094.1| ATPase AAA-2 domain protein [Desulfobacca acetoxidans DSM 11109]
 gi|328452084|gb|AEB07913.1| ATPase AAA-2 domain protein [Desulfobacca acetoxidans DSM 11109]
          Length = 595

 Score = 40.4 bits (93), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 26/127 (20%)

Query: 55  DHVLFVGPPGLGKTTLAQVVARELGVNF-------RSTSGPVIAKAGDLAALLTNLEDRD 107
           ++++ +GP G+GKT L +++A++LGV F        S +G V     DL   L    D D
Sbjct: 116 NNIILIGPTGVGKTYLVKLIAKKLGVPFVKGDATKFSETGYVGGDVEDLVRDLVYEADDD 175

Query: 108 -------VLFIDEIHRLSII------------VEEILYPAMEDFQLDLMVGEGPSARSVK 148
                  +++IDEI +++              V+  L   ME+ ++DL     P ++   
Sbjct: 176 LELAQFGIIYIDEIDKIAASGNLIGPDVSRSGVQRALLKPMEETEVDLKTPHDPISQIQA 235

Query: 149 INLSRFT 155
           I   R T
Sbjct: 236 IEHYRRT 242


>gi|330845966|ref|XP_003294831.1| replication factor C subunit [Dictyostelium purpureum]
 gi|325074630|gb|EGC28646.1| replication factor C subunit [Dictyostelium purpureum]
          Length = 344

 Score = 40.4 bits (93), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 5/60 (8%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          +S  RP+T+++ + Q +  S LK  +         L H+LF GPPG GKT+    +A ++
Sbjct: 14 VSKYRPKTMDDVSYQDDVVSALKKSLSTGN-----LPHLLFYGPPGTGKTSTILAIAMDI 68


>gi|303240903|ref|ZP_07327414.1| AAA ATPase [Acetivibrio cellulolyticus CD2]
 gi|302591489|gb|EFL61226.1| AAA ATPase [Acetivibrio cellulolyticus CD2]
          Length = 1677

 Score = 40.4 bits (93), Expect = 0.39,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 27/51 (52%)

Query: 41   KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA 91
            ++ +     R + +  +L + PPG GKTTL + +A  LG+     +GP I 
Sbjct: 1262 QIGVAGEDKRTDLMGMLLLISPPGYGKTTLMEYIASRLGITMVKINGPAIG 1312


>gi|297802292|ref|XP_002869030.1| AAA-type ATPase family protein [Arabidopsis lyrata subsp. lyrata]
 gi|297314866|gb|EFH45289.1| AAA-type ATPase family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 620

 Score = 40.4 bits (93), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 70/156 (44%), Gaps = 31/156 (19%)

Query: 38  SNLKVFIEA-AKARAEALDH------VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           ++LK  IE  A+A A    H      ++F GPPG GKT +A+ +AR+ G+++   +G  +
Sbjct: 347 TSLKKRIEHLARATANTKSHQAPFRNMMFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV 406

Query: 91  AKAGDLAAL----LTNLEDRD----VLFIDE-----IHRLSIIVEEILYPAMEDFQLDLM 137
           A  G  A      + +   +     +LFIDE       R S  + E    A+      L+
Sbjct: 407 APLGSQAVTKIHQIFDWAKKSNKGLLLFIDEADAFLCRRNSTYMSEAQRSALN----ALL 462

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
              G  +R +        L+ AT R G L + + DR
Sbjct: 463 FRTGDQSRDI-------VLVLATNRPGDLDSAVTDR 491


>gi|257439813|ref|ZP_05615568.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Faecalibacterium prausnitzii A2-165]
 gi|257197722|gb|EEU96006.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Faecalibacterium prausnitzii A2-165]
          Length = 439

 Score = 40.4 bits (93), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDV 108
           +VL +GP G+GKT LAQ +A+ LGV F       + +AG +   + N+        D DV
Sbjct: 129 NVLLLGPSGVGKTLLAQTLAKMLGVPFAIADATTLTEAGYVGEDVENILLKLLQAADFDV 188

Query: 109 -------LFIDEIHRLS 118
                  ++IDEI +++
Sbjct: 189 QKAQVGIIYIDEIDKIT 205


>gi|225420297|ref|ZP_03762600.1| hypothetical protein CLOSTASPAR_06640 [Clostridium asparagiforme
           DSM 15981]
 gi|225041114|gb|EEG51360.1| hypothetical protein CLOSTASPAR_06640 [Clostridium asparagiforme
           DSM 15981]
          Length = 595

 Score = 40.4 bits (93), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           +L VGPPG GKT LA+ VA E GV F S SG
Sbjct: 184 LLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 214


>gi|255582646|ref|XP_002532103.1| Protein MSP1, putative [Ricinus communis]
 gi|223528225|gb|EEF30282.1| Protein MSP1, putative [Ricinus communis]
          Length = 323

 Score = 40.4 bits (93), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           +L  GPPG GKT LA+ +A E G NF S +G  +     GD   L   L          +
Sbjct: 73  ILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVI 132

Query: 109 LFIDEIHRL 117
           +F+DE+  L
Sbjct: 133 IFVDEVDSL 141


>gi|224070873|ref|XP_002303274.1| predicted protein [Populus trichocarpa]
 gi|222840706|gb|EEE78253.1| predicted protein [Populus trichocarpa]
          Length = 498

 Score = 40.4 bits (93), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLED------RDV 108
           VL  GPPG GKT LA+ VA E G  F + S   +A    G+   ++  L D         
Sbjct: 279 VLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPST 338

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 339 IFIDEIDSL 347


>gi|222097842|ref|YP_002531899.1| ATPase, AAA family [Bacillus cereus Q1]
 gi|221241900|gb|ACM14610.1| ATPase, AAA family [Bacillus cereus Q1]
          Length = 146

 Score = 40.4 bits (93), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 2/82 (2%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           ++R+  L   V  +      +RP  ++E  GQ       K+     +A       ++  G
Sbjct: 37  IERDYTLRETVKMKQPLAHRMRPTNIQEIIGQQHLVGEGKILWRMVQA--NHFQSMILYG 94

Query: 62  PPGLGKTTLAQVVARELGVNFR 83
           PPG GKT++A  +A   G  FR
Sbjct: 95  PPGTGKTSIASAIAGSTGTPFR 116


>gi|219128993|ref|XP_002184684.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217403793|gb|EEC43743.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 590

 Score = 40.4 bits (93), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 1/80 (1%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQV-EACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           ++ +++ED  ++       +E   ++ E    LK      K  A+     L  GPPG GK
Sbjct: 101 AKKINKEDVTVNFASVAGCDEAKKEIMEFVDFLKDSDRFTKLGAKIPKGALLCGPPGTGK 160

Query: 68  TTLAQVVARELGVNFRSTSG 87
           T LA+ VA E GV F S SG
Sbjct: 161 TLLAKAVAGEAGVPFYSISG 180


>gi|219850937|ref|YP_002465369.1| AAA family ATPase, CDC48 subfamily [Methanosphaerula palustris
           E1-9c]
 gi|219545196|gb|ACL15646.1| AAA family ATPase, CDC48 subfamily [Methanosphaerula palustris
           E1-9c]
          Length = 810

 Score = 40.4 bits (93), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNL--EDRD----V 108
           VL  GPPG GKT +A+ VA E G +F + +GP VI+K  G+    L  +  E R+    +
Sbjct: 226 VLLYGPPGTGKTLIAKAVASESGAHFIAIAGPEVISKYYGESEQRLREVFEEARENAPAI 285

Query: 109 LFIDEIHRLS 118
           +FIDE+  ++
Sbjct: 286 IFIDELDSIA 295



 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 17/32 (53%), Positives = 19/32 (59%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT +A+  A E G NF    GP
Sbjct: 499 VLLYGPPGTGKTLIAKAAAHESGANFIPVRGP 530


>gi|158301622|ref|XP_321284.4| AGAP001783-PA [Anopheles gambiae str. PEST]
 gi|157012561|gb|EAA01173.4| AGAP001783-PA [Anopheles gambiae str. PEST]
          Length = 587

 Score = 40.4 bits (93), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108
           VL VGPPG GKT LA+ VA E G  F + S   +     G+   L      +        
Sbjct: 345 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPST 404

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 405 IFIDEIDSL 413


>gi|126659472|ref|ZP_01730605.1| cell division protein; FtsH [Cyanothece sp. CCY0110]
 gi|126619206|gb|EAZ89942.1| cell division protein; FtsH [Cyanothece sp. CCY0110]
          Length = 667

 Score = 40.4 bits (93), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL VGPPG GKT LA+ VA E GV F S S     +   G  AA + +L ++       +
Sbjct: 244 VLLVGPPGTGKTLLAKAVAGEAGVTFFSISASEFVELFVGTGAARVRDLFEQAKKQAPCI 303

Query: 109 LFIDEI 114
           +FIDE+
Sbjct: 304 IFIDEL 309


>gi|114653055|ref|XP_509951.2| PREDICTED: similar to Psmc6 protein isoform 3 [Pan troglodytes]
          Length = 353

 Score = 40.4 bits (93), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 56/124 (45%), Gaps = 23/124 (18%)

Query: 8   LSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV--------L 58
           L  N+S ED  ++S        E  G  E    L+  IE      E    V        L
Sbjct: 132 LVYNMSHEDPGNVSY------SEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCL 185

Query: 59  FVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA-GDLAALLTNLED--RD----VLF 110
             GPPG GKT LA+ VA +L  NF +  S  ++ K  G+ A L+  + +  RD    ++F
Sbjct: 186 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIF 245

Query: 111 IDEI 114
           +DEI
Sbjct: 246 MDEI 249


>gi|78223741|ref|YP_385488.1| peptidase S16, ATP-dependent protease La [Geobacter metallireducens
           GS-15]
 gi|78194996|gb|ABB32763.1| Peptidase S16, ATP-dependent protease La [Geobacter metallireducens
           GS-15]
          Length = 774

 Score = 40.4 bits (93), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 90/219 (41%), Gaps = 49/219 (22%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA---GDLAALLTNLEDR------ 106
           + FVGPPG+GKT+L + +AR LG  F R + G +  +A   G     +  L  R      
Sbjct: 352 LCFVGPPGVGKTSLGKSIARALGRKFIRMSLGGMRDEAEIRGHRRTYIGALPGRIIQELY 411

Query: 107 ------DVLFIDEIHRLSI--------IVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152
                  V  +DE+ ++ +         + E+L P   +   D  +        V  +LS
Sbjct: 412 RCGTNNPVFMLDEVDKIGLDFRGDPASALLEVLDPEQNNTFTDHYL-------DVPFDLS 464

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED-----LKTIVQRGAKLTGLAVTDEA 207
               I    ++  +   L+DR  + IRL+ Y  E+     ++ +V R  +  GLA    A
Sbjct: 465 NVMFITTANQLDPVPAALKDRMEV-IRLSGYTDEEKEKIAVRYLVPREVEENGLAKNPPA 523

Query: 208 ACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + A            L + +RD+   A  + + R IA
Sbjct: 524 FADEA------------LFKIIRDYTREAGVRNLQRNIA 550


>gi|16081968|ref|NP_394378.1| regulatory protein moxR related protein [Thermoplasma acidophilum
           DSM 1728]
 gi|10640197|emb|CAC12049.1| regulatory protein moxR related protein [Thermoplasma acidophilum]
          Length = 319

 Score = 40.4 bits (93), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 12/94 (12%)

Query: 55  DHVLFVGPPGLGKTTLAQVVARELGVNFRSTS-GPVIAKAGDLAALLTNLEDR------- 106
           +H+L  G PGL KT LA   AR   + FR     P +  +     ++ N+E R       
Sbjct: 43  NHILMEGVPGLAKTMLANEFARHTRMKFRRIQFTPDMLPSDVTGTIMFNIESRKMEFKEG 102

Query: 107 ----DVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
               +V+  DEI+R    V+  L  AME+ Q+ +
Sbjct: 103 PIFANVILADEINRTPPKVQSALLEAMEETQVTI 136


>gi|317506432|ref|ZP_07964235.1| DNA polymerase III [Segniliparus rugosus ATCC BAA-974]
 gi|316255263|gb|EFV14530.1| DNA polymerase III [Segniliparus rugosus ATCC BAA-974]
          Length = 322

 Score = 40.4 bits (93), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 6/68 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
          RP  L++  GQ      L V +EA +     L H  LF GP G GKT+LA+++AR +   
Sbjct: 8  RPERLDQVLGQDHVTRPLSVALEAGR-----LGHAYLFSGPRGCGKTSLARILARSVNCE 62

Query: 82 FRSTSGPV 89
             T+ P 
Sbjct: 63 RGPTANPC 70


>gi|308272581|emb|CBX29185.1| ATP-dependent protease La 2 [uncultured Desulfobacterium sp.]
          Length = 789

 Score = 40.4 bits (93), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLA 71
           ++++ DI   R    E+  G  +A   +  F+   K + E+   +L F GPPG GKT+L 
Sbjct: 320 TKDNLDIKKARKVLDEDHYGLEKAKKRIIEFLAVRKLKPESKGPILCFAGPPGTGKTSLG 379

Query: 72  QVVARELGVNF 82
           + +AR LG  F
Sbjct: 380 KSIARALGRKF 390


>gi|307352634|ref|YP_003893685.1| AAA ATPase central domain-containing protein [Methanoplanus
           petrolearius DSM 11571]
 gi|307155867|gb|ADN35247.1| AAA ATPase central domain protein [Methanoplanus petrolearius DSM
           11571]
          Length = 601

 Score = 40.4 bits (93), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 95/220 (43%), Gaps = 54/220 (24%)

Query: 56  HVLFVGPPGLGKTTLAQVVA---RELGVNFRSTSGPVIAKAGDLAALL---TNLEDRD-- 107
           H++F G PG GKTT+A++V+    +LGV   S    V     DL A     T L+ ++  
Sbjct: 379 HMVFSGNPGTGKTTVARLVSEIYHKLGV--LSKGHLVEVDRADLVAGYVGQTALKVQEVV 436

Query: 108 ------VLFIDEIHRLS------IIVEEI--LYPAMEDFQLDLMVGEGPSARSVKINLSR 153
                 VLFIDE + L+         E I  L  AMED + DL+V               
Sbjct: 437 QSALGGVLFIDEAYTLTSKEGNDFGDEAIATLLKAMEDNRNDLLV--------------- 481

Query: 154 FTLIAATTRV---GLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDE--- 206
             ++A    +    L +NP L+ RF   I    Y  E+L  ++    +  G+A++DE   
Sbjct: 482 --IVAGYPDLMNEFLQSNPGLRSRFNKFINFEDYSPEELMEMLDMRCRKNGMALSDESRV 539

Query: 207 ---AACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
              A  E   +++G     G   R VR+F E A+     R
Sbjct: 540 YARAFFEKRCKTKGADFANG---RDVRNFFERAYLNMSDR 576


>gi|296272249|ref|YP_003654880.1| ATP-dependent metalloprotease FtsH [Arcobacter nitrofigilis DSM
           7299]
 gi|296096424|gb|ADG92374.1| ATP-dependent metalloprotease FtsH [Arcobacter nitrofigilis DSM
           7299]
          Length = 688

 Score = 40.4 bits (93), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E  V F S SG
Sbjct: 229 VLLVGPPGTGKTLLAKAVAGEADVEFLSVSG 259


>gi|258593181|emb|CBE69514.1| Cell division protein FtsH; ATP-dependent zinc-metallo protease
           [NC10 bacterium 'Dutch sediment']
          Length = 642

 Score = 40.4 bits (93), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           +L VGPPG GKT LA+ VA E GV F S SG
Sbjct: 198 LLLVGPPGCGKTLLAKAVAGEAGVPFFSLSG 228


>gi|227544679|ref|ZP_03974728.1| ATP-dependent metalloprotease FtsH [Lactobacillus reuteri CF48-3A]
 gi|300909079|ref|ZP_07126542.1| cell division protein FtsH [Lactobacillus reuteri SD2112]
 gi|227185325|gb|EEI65396.1| ATP-dependent metalloprotease FtsH [Lactobacillus reuteri CF48-3A]
 gi|300894486|gb|EFK87844.1| cell division protein FtsH [Lactobacillus reuteri SD2112]
          Length = 702

 Score = 40.4 bits (93), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           VL  GPPG GKT LA+ VA E GV F S SG    +   G  A+ + +L D+       +
Sbjct: 231 VLLEGPPGTGKTLLAKAVAGESGVPFFSISGSDFVEMFVGVGASRVRDLFDQAKKAAPAI 290

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 291 IFIDEI 296


>gi|163816595|ref|ZP_02207959.1| hypothetical protein COPEUT_02786 [Coprococcus eutactus ATCC 27759]
 gi|158448295|gb|EDP25290.1| hypothetical protein COPEUT_02786 [Coprococcus eutactus ATCC 27759]
          Length = 629

 Score = 40.4 bits (93), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--V 108
           +L VGPPG GKT LA+ VA E  V F S SG    +      A  +  L    +++   +
Sbjct: 227 ILLVGPPGTGKTMLAKAVAGEANVPFFSMSGSEFVEMFVGMGASKVRDLFQQAKEKAPCI 286

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 287 VFIDEI 292


>gi|84495018|ref|ZP_00994137.1| putative cell division protein FtsH [Janibacter sp. HTCC2649]
 gi|84384511|gb|EAQ00391.1| putative cell division protein FtsH [Janibacter sp. HTCC2649]
          Length = 707

 Score = 40.4 bits (93), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 207 VLLYGPPGTGKTLLARAVAGEAGVPFYSISG 237


>gi|332638690|ref|ZP_08417553.1| FtsH-2 peptidase [Weissella cibaria KACC 11862]
          Length = 687

 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           VL  GPPG GKT LA+ VA E GV F S SG    +   G  A+ + +L D        +
Sbjct: 229 VLLEGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFDNAKKAAPSI 288

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 289 IFIDEI 294


>gi|284164772|ref|YP_003403051.1| 26S proteasome subunit P45 family [Haloterrigena turkmenica DSM
           5511]
 gi|284014427|gb|ADB60378.1| 26S proteasome subunit P45 family [Haloterrigena turkmenica DSM
           5511]
          Length = 405

 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLED--RD----V 108
           VL  GPPG GKT LA+ VA E    F   +G  +     G+ A L+ +L D  R+    V
Sbjct: 186 VLLYGPPGTGKTMLAKAVANETNATFIKMAGSELVHKFIGEGAKLVRDLFDVAREHEPAV 245

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 246 IFIDEI 251


>gi|284162502|ref|YP_003401125.1| ATPase AAA [Archaeoglobus profundus DSM 5631]
 gi|284012499|gb|ADB58452.1| AAA ATPase central domain protein [Archaeoglobus profundus DSM
           5631]
          Length = 412

 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 16/70 (22%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGV------------NFRSTSGPVIAKAGDLAALLTNL 103
            +LF+GPPG GKTT A+ ++R+LG+             +   +   I K  +LA +L+  
Sbjct: 203 KLLFIGPPGTGKTTTARALSRKLGLPLVEVKLSMITSQYLGETSKNIEKVFELAKILSPC 262

Query: 104 EDRDVLFIDE 113
               +LFIDE
Sbjct: 263 ----ILFIDE 268


>gi|281203381|gb|EFA77581.1| AAA ATPase domain-containing protein [Polysphondylium pallidum
           PN500]
          Length = 336

 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 68/158 (43%), Gaps = 32/158 (20%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRDVLFIDEI 114
           +L  GPPG GKT LA+ +A+E G  F + +  +I     G+   LLT +           
Sbjct: 116 ILLYGPPGTGKTMLAKAIAKESGYFFLNINDSLIESKFYGETGKLLTAI----------- 164

Query: 115 HRLSIIVEEILYPAMEDF-QLDLMVGE--------GPSARSVKINL------SRFTLIAA 159
                 + E L P +  F ++D +VG           S +SV + L      S+  +I A
Sbjct: 165 ----FTLAEKLQPVIVFFDEIDGIVGTRSATTTDYNISKKSVLLQLWDGIKDSKIIIIGA 220

Query: 160 TTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
           T R+  +      R    IR+N  ++   + I+++  K
Sbjct: 221 TNRINAIDEAFLRRMPKRIRINLPDVTSRENILRKMLK 258


>gi|242770327|ref|XP_002341956.1| DNA replication factor C subunit Rfc3, putative [Talaromyces
           stipitatus ATCC 10500]
 gi|218725152|gb|EED24569.1| DNA replication factor C subunit Rfc3, putative [Talaromyces
           stipitatus ATCC 10500]
          Length = 399

 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           RP +L+E  G  +  + +  FI++ +     L H+L  GPPG GKTT    +AR +
Sbjct: 52  RPNSLDEVQGHQDILATINRFIDSHR-----LPHLLLYGPPGTGKTTTILALARRI 102


>gi|188589992|ref|YP_001919612.1| putative Cell division protease FtsH homolog [Clostridium botulinum
           E3 str. Alaska E43]
 gi|251780453|ref|ZP_04823373.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|188500273|gb|ACD53409.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum E3 str.
           Alaska E43]
 gi|243084768|gb|EES50658.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 601

 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ ++ E GV F S SG
Sbjct: 195 VLLVGPPGTGKTLLAKAISGEAGVPFFSISG 225


>gi|167772096|ref|ZP_02444149.1| hypothetical protein ANACOL_03470 [Anaerotruncus colihominis DSM
           17241]
 gi|167665894|gb|EDS10024.1| hypothetical protein ANACOL_03470 [Anaerotruncus colihominis DSM
           17241]
          Length = 653

 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL +GPPG GKT LA+ VA E GV F S SG
Sbjct: 211 VLLMGPPGTGKTLLAKAVAGEAGVPFFSISG 241


>gi|163841941|ref|YP_001626346.1| cell division protein [Renibacterium salmoninarum ATCC 33209]
 gi|162955417|gb|ABY24932.1| cell division protein [Renibacterium salmoninarum ATCC 33209]
          Length = 704

 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 202 VLLYGPPGTGKTLLARAVAGEAGVPFYSISG 232


>gi|308800020|ref|XP_003074791.1| replication factor C 110 kDa subunit (ISS) [Ostreococcus tauri]
 gi|116061331|emb|CAL52049.1| replication factor C 110 kDa subunit (ISS) [Ostreococcus tauri]
          Length = 553

 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 18/119 (15%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAKAR-------AEALDHVLFVGPPGLGKTTLAQVVAR 76
           PRT+ +  G   A + L+ ++    AR        +    +L  GPPG+GKTT A ++ +
Sbjct: 72  PRTVTDLVGNSSAINVLRSWLLQWSARKFNVQLKGQDRKCILISGPPGVGKTTTAVLLCK 131

Query: 77  ELGV--------NFRSTSGPVI-AKAGDLAALLTNLEDRDVLFID--EIHRLSIIVEEI 124
           ELG+        + R  SG V+   AG LA+ +        +  D  +  R ++I++E+
Sbjct: 132 ELGLQTLNINASDSRGKSGKVVDGIAGTLASAVREFVTNKCIGSDSEQTVRSALIMDEV 190


>gi|52078564|ref|YP_077355.1| cell-division protein and general stress protein [Bacillus
           licheniformis ATCC 14580]
 gi|52783926|ref|YP_089755.1| hypothetical protein BLi00085 [Bacillus licheniformis ATCC 14580]
 gi|319648593|ref|ZP_08002807.1| cell division protease ftsH [Bacillus sp. BT1B_CT2]
 gi|52001775|gb|AAU21717.1| cell-division protein and general stress protein (class III
           heat-shock) [Bacillus licheniformis ATCC 14580]
 gi|52346428|gb|AAU39062.1| FtsH [Bacillus licheniformis ATCC 14580]
 gi|317389360|gb|EFV70173.1| cell division protease ftsH [Bacillus sp. BT1B_CT2]
          Length = 639

 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+  A E GV F S SG       V   A  +  L  N +     +
Sbjct: 197 VLLVGPPGTGKTLLAKACAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCL 256

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 257 IFIDEI 262


>gi|125624160|ref|YP_001032643.1| ATP-dependent protease ATP-binding subunit [Lactococcus lactis
           subsp. cremoris MG1363]
 gi|38257645|sp|Q8GJP6|CLPX_LACLM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|7546983|gb|AAF63738.1|AF236863_2 protease ClpX [Lactococcus lactis subsp. cremoris MG1363]
 gi|24935310|gb|AAN64303.1| ClpX protein [Lactococcus lactis subsp. cremoris MG1363]
 gi|124492968|emb|CAL97931.1| ATP-dependent Clp protease ATP-binding subunit clpX [Lactococcus
           lactis subsp. cremoris MG1363]
 gi|300070936|gb|ADJ60336.1| ATP-dependent protease ATP-binding subunit ClpX [Lactococcus lactis
           subsp. cremoris NZ9000]
          Length = 411

 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +A+ L V F       + +AG    D+  +L  L        
Sbjct: 111 NILLIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLLQASDFNI 170

Query: 104 --EDRDVLFIDEIHRLS 118
              +R +++IDEI +++
Sbjct: 171 ERAERGIIYIDEIDKIA 187


>gi|71028288|ref|XP_763787.1| 26S proteasome regulatory subunit [Theileria parva strain Muguga]
 gi|68350741|gb|EAN31504.1| 26S proteasome regulatory subunit, putative [Theileria parva]
          Length = 415

 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA-GDLAALLTNL----EDRD--V 108
           VL  GPPG GKT LA+ +A +LG NF +  +  V+ K  G+ A ++  +    +D    +
Sbjct: 196 VLLYGPPGTGKTLLARALANDLGCNFLKVVASAVVDKYIGESAKIIREMFGYAKDNQPCI 255

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 256 IFIDEI 261


>gi|322786219|gb|EFZ12823.1| hypothetical protein SINV_00013 [Solenopsis invicta]
          Length = 431

 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 14/101 (13%)

Query: 57  VLFVGPPGLGKTTLAQVVA---RELG------VNFRSTSGPV--IAKAGDLAALLTNLED 105
           ++F GPPG GKT+L  ++A   ++L       VN  + +  V  I  A   A     L D
Sbjct: 77  MIFWGPPGCGKTSLTNIIATLSKKLTSNNVHIVNLSAANSGVKNIRDAVTEAKNKLKLSD 136

Query: 106 -RDVLFIDEIHRLSIIVEEILYPAME--DFQLDLMVGEGPS 143
            + ++F+DEIH  + + ++I  P +E   F L     E PS
Sbjct: 137 CKTIVFMDEIHCFNKLQQDIFLPHVEAGTFTLIGCTTENPS 177


>gi|323138990|ref|ZP_08074050.1| ATP-dependent metalloprotease FtsH [Methylocystis sp. ATCC 49242]
 gi|322395744|gb|EFX98285.1| ATP-dependent metalloprotease FtsH [Methylocystis sp. ATCC 49242]
          Length = 639

 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 192 VLLVGPPGTGKTLLARAIAGEAGVPFFSISG 222


>gi|319956958|ref|YP_004168221.1| sigma 54 interacting domain protein [Nitratifractor salsuginis DSM
           16511]
 gi|319419362|gb|ADV46472.1| Sigma 54 interacting domain protein [Nitratifractor salsuginis DSM
           16511]
          Length = 405

 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 56/128 (43%), Gaps = 29/128 (22%)

Query: 20  SLLRPRTLEEF-----TGQVEACSNLKVFIEAAKAR----------AEALDHVLFVGPPG 64
            LL P+ L+ F      GQ EA   L V +     R            +  ++L +GP G
Sbjct: 55  KLLTPKELKHFLDEYVIGQEEAKKTLSVAVYNHYKRLFKHIEDDDTEISKSNILLIGPTG 114

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL----------EDRDVLF 110
            GKT LAQ +AR L V         + +AG    D+  +LT L           ++ ++F
Sbjct: 115 SGKTLLAQSIARFLDVPIAIADATNLTEAGYVGEDVENILTKLLMAADGDVDKAEKGIVF 174

Query: 111 IDEIHRLS 118
           IDEI +++
Sbjct: 175 IDEIDKIA 182


>gi|311743363|ref|ZP_07717170.1| ATP-dependent metalloprotease FtsH [Aeromicrobium marinum DSM
           15272]
 gi|311313431|gb|EFQ83341.1| ATP-dependent metalloprotease FtsH [Aeromicrobium marinum DSM
           15272]
          Length = 687

 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 33/58 (56%), Gaps = 4/58 (6%)

Query: 34  VEACSNLKVFI-EAAKARA---EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           +E    +K F+ E AK +A   +    VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 197 IEELGEIKEFLAEPAKFQAVGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISG 254


>gi|296232625|ref|XP_002761658.1| PREDICTED: lon protease homolog, mitochondrial isoform 1
           [Callithrix jacchus]
          Length = 960

 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 87/207 (42%), Gaps = 33/207 (15%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLA 71
           S E+ D++  +    E+  G  +    +  FI  ++ R      +L F GPPG+GKT++A
Sbjct: 474 SDENLDLARAQAVLEEDHYGMEDVKKRILEFIAVSQLRGSTQGKILCFYGPPGVGKTSIA 533

Query: 72  QVVARELGVN-FRSTSGP--------------VIAKAGDLAALLTNLEDRD-VLFIDEIH 115
           + +AR L    FR + G               V A  G +   L   +  + ++ IDE+ 
Sbjct: 534 RSIARALNREYFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLILIDEVD 593

Query: 116 RL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           ++        S  + E+L P      LD  +        V ++LS+   I        + 
Sbjct: 594 KIGRGYQGDPSSALLELLDPEQNANFLDHYL-------DVPVDLSKVLFICTANVTDTIP 646

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQR 194
            PL+DR  + I ++ Y  ++   I +R
Sbjct: 647 EPLRDRMEV-ISVSGYVAQEKLAIAER 672


>gi|289164075|ref|YP_003454213.1| protease, ATP-dependent zinc-metallo [Legionella longbeachae
           NSW150]
 gi|288857248|emb|CBJ11073.1| protease, ATP-dependent zinc-metallo [Legionella longbeachae
           NSW150]
          Length = 553

 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S +G
Sbjct: 146 VLLVGPPGTGKTLLARAVAGEAGVPFFSING 176


>gi|270157541|ref|ZP_06186198.1| cell division protease FtsH-like protein [Legionella longbeachae
           D-4968]
 gi|269989566|gb|EEZ95820.1| cell division protease FtsH-like protein [Legionella longbeachae
           D-4968]
          Length = 601

 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S +G
Sbjct: 194 VLLVGPPGTGKTLLARAVAGEAGVPFFSING 224


>gi|281411913|ref|YP_003345992.1| DNA polymerase III, subunits gamma and tau [Thermotoga naphthophila
           RKU-10]
 gi|281373016|gb|ADA66578.1| DNA polymerase III, subunits gamma and tau [Thermotoga naphthophila
           RKU-10]
          Length = 478

 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 93/237 (39%), Gaps = 43/237 (18%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  E   Q     ++K  I  A  +       +F GP G GKTTLA+++A+ L    
Sbjct: 9   RPKTFSEVVNQ----DHVKKAIIGAIQKNSVAHGYIFAGPRGTGKTTLARILAKSLNCEN 64

Query: 83  RSTSGPV----IAKAGDLAALLTNLE-----DRDVLFIDEIHRLS--------------I 119
           R    P       +  D    +  +E     +R    IDEI R+                
Sbjct: 65  RKGVEPCNSCRACREIDEGTFMDVIELDAASNRG---IDEIRRIRDAVGYRPMEGKYKVY 121

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           I++E+     E F   L   E P +  V         + ATT +  +   +  R  +   
Sbjct: 122 IIDEVHMLTKEAFNALLKTLEEPPSHVV--------FVLATTNLEKVPPTIISRCQV--- 170

Query: 180 LNFYEIED--LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
             F  I D  ++  +Q  A+  G+ +  EA   IA R+ G  R A  +L +V  F+E
Sbjct: 171 FEFRNIPDELIEKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWKFSE 227


>gi|255552989|ref|XP_002517537.1| Katanin p60 ATPase-containing subunit, putative [Ricinus communis]
 gi|223543169|gb|EEF44701.1| Katanin p60 ATPase-containing subunit, putative [Ricinus communis]
          Length = 523

 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLED------RDV 108
           VL  GPPG GKT LA+ VA E G  F + S   +A    G+   ++  L D         
Sbjct: 275 VLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPST 334

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 335 IFIDEIDSL 343


>gi|210622564|ref|ZP_03293246.1| hypothetical protein CLOHIR_01194 [Clostridium hiranonis DSM
          13275]
 gi|210154147|gb|EEA85153.1| hypothetical protein CLOHIR_01194 [Clostridium hiranonis DSM
          13275]
          Length = 438

 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 2/61 (3%)

Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           RP  +E+  GQ       KV     ++    + +++F GPPG GKTTLA ++A   G  
Sbjct: 16 FRPSKIEDMVGQSHIIGENKVMNRIIQSGN--IPNMIFYGPPGTGKTTLANIIANATGKK 73

Query: 82 F 82
          +
Sbjct: 74 Y 74


>gi|147797355|emb|CAN76004.1| hypothetical protein VITISV_021762 [Vitis vinifera]
          Length = 512

 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLED------RDV 108
           VL  GPPG GKT LA+ VA E G  F + S   +A    G+   ++  L D         
Sbjct: 273 VLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPST 332

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 333 IFIDEIDSL 341


>gi|73984095|ref|XP_540960.2| PREDICTED: similar to spermatogenesis associated factor SPAF [Canis
           familiaris]
          Length = 893

 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALL------TNLEDRDV 108
           VL  GPPG GKT +A+ VA E+G      +GP +I+K  G+  A L        L    +
Sbjct: 390 VLLYGPPGTGKTMIARAVANEVGAYVSVINGPEIISKFYGETEARLRQIFAEATLRHPSI 449

Query: 109 LFIDEIHRLS 118
           +FIDE+  L 
Sbjct: 450 IFIDELDALC 459



 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 16/32 (50%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG  KT +A+ +A E G+NF +  GP
Sbjct: 664 VLLYGPPGCSKTMIAKALANESGLNFLAIKGP 695


>gi|15643449|ref|NP_228495.1| DNA polymerase III, gamma and tau subunit [Thermotoga maritima
           MSB8]
 gi|4981209|gb|AAD35768.1|AE001741_1 DNA polymerase III, gamma and tau subunit [Thermotoga maritima
           MSB8]
          Length = 478

 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 93/237 (39%), Gaps = 43/237 (18%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  E   Q     ++K  I  A  +       +F GP G GKTTLA+++A+ L    
Sbjct: 9   RPKTFSEVVNQ----DHVKKAIIGAIQKNSVAHGYIFAGPRGTGKTTLARILAKSLNCEN 64

Query: 83  RSTSGPV----IAKAGDLAALLTNLE-----DRDVLFIDEIHRLS--------------I 119
           R    P       +  D    +  +E     +R    IDEI R+                
Sbjct: 65  RKGVEPCNSCRACREIDEGTFMDVIELDAASNRG---IDEIRRIRDAVGYRPMEGKYKVY 121

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           I++E+     E F   L   E P +  V         + ATT +  +   +  R  +   
Sbjct: 122 IIDEVHMLTKEAFNALLKTLEEPPSHVV--------FVLATTNLEKVPPTIISRCQV--- 170

Query: 180 LNFYEIED--LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
             F  I D  ++  +Q  A+  G+ +  EA   IA R+ G  R A  +L +V  F+E
Sbjct: 171 FEFRNIPDELIEKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWKFSE 227


>gi|71407388|ref|XP_806166.1| AAA ATPase [Trypanosoma cruzi strain CL Brener]
 gi|70869829|gb|EAN84315.1| AAA ATPase, putative [Trypanosoma cruzi]
          Length = 783

 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDRD------V 108
           VL  GPPG  KT LA+ +A E  +NF S  GP V +K  GD    + ++  R       V
Sbjct: 553 VLLYGPPGCSKTMLAKALANESKMNFISVKGPEVFSKWVGDSEKAVRDIFTRARAVAPCV 612

Query: 109 LFIDEI 114
           +FIDE+
Sbjct: 613 IFIDEL 618


>gi|322823350|gb|EFZ29121.1| AAA ATPase, putative [Trypanosoma cruzi]
          Length = 782

 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDRD------V 108
           VL  GPPG  KT LA+ +A E  +NF S  GP V +K  GD    + ++  R       V
Sbjct: 552 VLLYGPPGCSKTMLAKALANESKMNFISVKGPEVFSKWVGDSEKAVRDIFTRARAVAPCV 611

Query: 109 LFIDEI 114
           +FIDE+
Sbjct: 612 IFIDEL 617


>gi|323139555|ref|ZP_08074600.1| ATP-dependent metalloprotease FtsH [Methylocystis sp. ATCC 49242]
 gi|322395174|gb|EFX97730.1| ATP-dependent metalloprotease FtsH [Methylocystis sp. ATCC 49242]
          Length = 662

 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 195 VLLVGPPGTGKTLLARAIAGEAGVPFFSISG 225


>gi|313159185|gb|EFR58558.1| DNA polymerase III, subunit gamma and tau [Alistipes sp. HGB5]
          Length = 749

 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 33/65 (50%), Gaps = 6/65 (9%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
          RP T     GQ    S LK  IE    RA+     LF GP G+GKTT A++ A+   +N 
Sbjct: 12 RPATFASVVGQKHITSTLKNAIE----RAQLAHAYLFCGPRGVGKTTCARIFAK--AINC 65

Query: 83 RSTSG 87
           S +G
Sbjct: 66 LSPNG 70


>gi|297153990|gb|ADI03702.1| hypothetical protein SBI_00581 [Streptomyces bingchenggensis BCW-1]
          Length = 1101

 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 108/275 (39%), Gaps = 69/275 (25%)

Query: 1    MMDREGL-LSRNVSQEDADISLLRP---------------RTLEEFTGQVEA-------- 36
            M+DR+   L    +  +AD+SLL P               R+ EE    ++A        
Sbjct: 788  MIDRQAFRLGSMANPAEADLSLLLPEDIADESAVAAGADGRSSEELLADLDAMIGLQAVK 847

Query: 37   --CSNLKVFIEAAKARAEA-------LDHVLFVGPPGLGKTTLAQVVAR-ELGVNFRSTS 86
               ++L   + A K R  A         H++F GPPG GKTT+A++ A   L +   +T 
Sbjct: 848  HEVTDLVNLLSATKRRQAAGLPTPKISHHLVFSGPPGTGKTTVARLYAELLLSLGVLATG 907

Query: 87   GPV-IAKA-------GDLAALLTNLEDR---DVLFIDEIHRLSI---------IVEEILY 126
              V +A+A       G  A L   + +R    VLFIDE + L+             + L 
Sbjct: 908  QLVEVARADLVGRYVGHTAQLTKEVFERALGGVLFIDEAYTLTPEGAGSDFGREAVDTLL 967

Query: 127  PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP-LQDRFGIPIRLNFYEI 185
              MED + +++V            ++RF          L +NP L  RF   +    Y  
Sbjct: 968  KLMEDHRDEVVV----IVAGYTEEMARF----------LASNPGLASRFSRSVDFEHYST 1013

Query: 186  EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPR 220
            ++L  I+ R A  +G     E    +     G PR
Sbjct: 1014 DELVEIMSRHATASGYDCAPETVEALLQYVAGLPR 1048


>gi|255325836|ref|ZP_05366928.1| membrane protease FtsH catalytic subunit [Corynebacterium
           tuberculostearicum SK141]
 gi|255297048|gb|EET76373.1| membrane protease FtsH catalytic subunit [Corynebacterium
           tuberculostearicum SK141]
          Length = 785

 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 203 VLLYGPPGTGKTLLARAVAGEAGVPFYSISG 233


>gi|238059367|ref|ZP_04604076.1| ATP-dependent protease La [Micromonospora sp. ATCC 39149]
 gi|237881178|gb|EEP70006.1| ATP-dependent protease La [Micromonospora sp. ATCC 39149]
          Length = 777

 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 79/189 (41%), Gaps = 44/189 (23%)

Query: 59  FVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA---GDLAALLTNLEDR-------- 106
             GPPG+GKT+L + VAR LG NF R + G V  +A   G     +  L  R        
Sbjct: 345 LAGPPGVGKTSLGESVARALGRNFVRVSLGGVRDEAEIRGHRRTYVGALPGRIVRALREA 404

Query: 107 ----DVLFIDEIHRLSI--------IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRF 154
                V+ +DE+ +L++         + E+L PA      D  +        V ++LS  
Sbjct: 405 GSMNPVVLLDEVDKLAVGYAGDPAAALLEVLDPAQNHTFRDHYL-------EVDLDLSDV 457

Query: 155 TLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG---------AKLTGLAVT- 204
             +A    V  +  PL DR  + + L+ Y  ED K  + R          A LT   VT 
Sbjct: 458 LFLATANVVETIPGPLLDRMEL-VTLDGY-TEDEKAAIARDHLLPRQLQRAGLTAEEVTV 515

Query: 205 -DEAACEIA 212
            DEA   IA
Sbjct: 516 ADEALTSIA 524


>gi|227834066|ref|YP_002835773.1| cell division protein FtsH [Corynebacterium aurimucosum ATCC
           700975]
 gi|262183448|ref|ZP_06042869.1| cell division protein FtsH [Corynebacterium aurimucosum ATCC
           700975]
 gi|227455082|gb|ACP33835.1| cell division protein FtsH [Corynebacterium aurimucosum ATCC
           700975]
          Length = 818

 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 203 VLLYGPPGTGKTLLARAVAGEAGVPFYSISG 233


>gi|255079830|ref|XP_002503495.1| predicted protein [Micromonas sp. RCC299]
 gi|226518762|gb|ACO64753.1| predicted protein [Micromonas sp. RCC299]
          Length = 1184

 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 8/93 (8%)

Query: 35  EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK-- 92
           E  S L+ +    +A A     VL  GPPG GKT LA+ +A E GV F + +G    +  
Sbjct: 539 ELISYLRDYQRYVRAGASIPMGVLLCGPPGTGKTLLARCLAGEAGVPFFACAGTEFMEMF 598

Query: 93  AGDLAALLTNLEDRD------VLFIDEIHRLSI 119
            G  AA + NL ++       ++FIDE   +++
Sbjct: 599 VGVGAARIRNLFNQARKCRPCIIFIDEFDSVAV 631


>gi|213965130|ref|ZP_03393328.1| Cell division protease FtsH homolog [Corynebacterium amycolatum
           SK46]
 gi|213952244|gb|EEB63628.1| Cell division protease FtsH homolog [Corynebacterium amycolatum
           SK46]
          Length = 894

 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 49/105 (46%), Gaps = 17/105 (16%)

Query: 26  TLEEFTGQVEACSNL---KVFIEAAKARAEALD-----HVLFVGPPGLGKTTLAQVVARE 77
           T E+  G  EA   L   + F++   AR E L       VL  GPPG GKT LA+ VA E
Sbjct: 166 TFEDVAGADEAVQELDEIRDFLQHP-ARYEELGAKIPRGVLLYGPPGTGKTLLARAVAGE 224

Query: 78  LGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEI 114
            GV F + SG       V   A  +  L    ++    ++FIDEI
Sbjct: 225 AGVPFYTISGSDFVEMFVGVGASRVRDLFNQAKENSPCIIFIDEI 269


>gi|182679710|ref|YP_001833856.1| ATPase central domain-containing protein [Beijerinckia indica
           subsp. indica ATCC 9039]
 gi|182635593|gb|ACB96367.1| AAA ATPase central domain protein [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 855

 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 97/232 (41%), Gaps = 49/232 (21%)

Query: 56  HVLFVGPPGLGKTTLAQV---VARELGVNFRST------SGPVIAKAGDLAALLTNLEDR 106
           H++F GPPG GKT +A++   + R+LGV  +        +G V    G   AL T  +  
Sbjct: 143 HMVFTGPPGTGKTAVARLYGAILRDLGVLEKGHLVETDRAGLVAGYVGQ-TALKTKEKIA 201

Query: 107 D----VLFIDEIHRLSIIVEEILYPAMEDF---QLDLMVGEGPSARSVKINLSRFTLIAA 159
           D    +LFIDE + L+   E +   A  DF    +D ++ E    R       R  +I A
Sbjct: 202 DALDGILFIDEAYALA---EPVGVGA--DFGQEAIDTLLKEMEDKR------DRLVVIVA 250

Query: 160 ----TTRVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAM- 213
                 R  L +NP L  RF   I    Y  +DL  I    A+  GL ++ +A   +   
Sbjct: 251 GYPDQMRKFLTSNPGLPSRFTKTIPFESYATDDLVAITHSMARRDGLHMSPDADPILKTF 310

Query: 214 --RSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA--IDKMGFD 261
             R+R  P           DFA    A+T+     +A   RLA  I   G D
Sbjct: 311 FERARTAP-----------DFANARTARTVLERAREAQAARLAPLITSSGVD 351



 Score = 39.3 bits (90), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 101/243 (41%), Gaps = 58/243 (23%)

Query: 56  HVLFVGPPGLGKTTLAQV---VARELGVNFRST------SGPVIAKAGDLAALLTNLEDR 106
           H++F GPPG GKT +A++   + RELGV  +        +G V    G   AL T  +  
Sbjct: 420 HMVFTGPPGTGKTAVARLYGAILRELGVLEKGHLIETDRAGLVAGYVGQ-TALKTKEKIA 478

Query: 107 D----VLFIDEIHRLSIIVE----------EILYPAMEDF--QLDLMVGEGPSARSVKIN 150
           D    +LFIDE + LS  +           E L   MED   +L ++V   P        
Sbjct: 479 DALDGILFIDEAYGLSQQMGSEHDFGREAIETLLKEMEDKRDRLVVIVAGYPD------E 532

Query: 151 LSRFTLIAATTRVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAAC 209
           +S+F          L +NP L  RF   I  + Y   +L +I +  A+  GL +  +A  
Sbjct: 533 MSKF----------LDSNPGLPSRFTKTIAFDSYGASELVSITRGMARHDGLYLNPDA-- 580

Query: 210 EIAMRSRGTPRIAGRLLRRVR---DFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLR 266
                      I      RVR   DFA    A+T+     +A   R+A   +G   +DL 
Sbjct: 581 ---------DPILTTYFERVRTEPDFANARTARTVLERAREAQAGRIA-PLIGTPGIDLN 630

Query: 267 YLT 269
            LT
Sbjct: 631 ELT 633


>gi|86150829|ref|ZP_01069045.1| cell division protein FtsH, putative [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|85841999|gb|EAQ59245.1| cell division protein FtsH, putative [Campylobacter jejuni subsp.
           jejuni 260.94]
          Length = 538

 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL VGPPG+GKT +A+ VA E GV F   SG 
Sbjct: 188 VLMVGPPGVGKTLIAKAVAGEAGVPFFYQSGS 219


>gi|332661274|gb|AEE86674.1| AAA-type ATPase family protein [Arabidopsis thaliana]
          Length = 632

 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 70/156 (44%), Gaps = 31/156 (19%)

Query: 38  SNLKVFIEA-AKARAEALDH------VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           ++LK  IE  A+A A    H      ++F GPPG GKT +A+ +AR+ G+++   +G  +
Sbjct: 359 TSLKKRIERLARATANTKSHQAPFRNMMFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV 418

Query: 91  AKAGDLAAL----LTNLEDRD----VLFIDE-----IHRLSIIVEEILYPAMEDFQLDLM 137
           A  G  A      + +   +     +LFIDE       R S  + E    A+      L+
Sbjct: 419 APLGSQAVTKIHQIFDWAKKSNKGLLLFIDEADAFLCERNSTYMSEAQRSALN----ALL 474

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
              G  +R +        L+ AT R G L + + DR
Sbjct: 475 FRTGDQSRDI-------VLVLATNRRGDLDSAVTDR 503


>gi|330814218|ref|YP_004358457.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Candidatus
           Pelagibacter sp. IMCC9063]
 gi|327487313|gb|AEA81718.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Candidatus
           Pelagibacter sp. IMCC9063]
          Length = 380

 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+         
Sbjct: 68  AKSNILLMGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 127

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDE+ ++S
Sbjct: 128 YNVEKAQRGIVYIDEVDKIS 147


>gi|323486792|ref|ZP_08092111.1| hypothetical protein HMPREF9474_03862 [Clostridium symbiosum
           WAL-14163]
 gi|323399931|gb|EGA92310.1| hypothetical protein HMPREF9474_03862 [Clostridium symbiosum
           WAL-14163]
          Length = 658

 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 7/64 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVN-FRSTSGPVIAKA-GDLAALLTNLED-----RDVL 109
           +LF GPPG GKT  AQV+A +L +  ++     V++K  G+    L N+ D     R +L
Sbjct: 506 MLFYGPPGTGKTMGAQVIANQLSMELYKVDLSSVMSKYIGETEKNLGNIFDEVKKSRSIL 565

Query: 110 FIDE 113
           F DE
Sbjct: 566 FFDE 569


>gi|291296855|ref|YP_003508253.1| ATP-dependent metalloprotease FtsH [Meiothermus ruber DSM 1279]
 gi|290471814|gb|ADD29233.1| ATP-dependent metalloprotease FtsH [Meiothermus ruber DSM 1279]
          Length = 622

 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 95/232 (40%), Gaps = 45/232 (19%)

Query: 51  AEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR-- 106
           AE    VL VGPPG GKT L + VA E GV F S S     +   G  A+ +  L D   
Sbjct: 196 AEIPKGVLLVGPPGTGKTLLTRAVAGEAGVPFFSVSASEFMEMFVGVGASRVRTLFDEAR 255

Query: 107 ----DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINL----------- 151
                ++FIDE+  +               +    +G G   R   +N            
Sbjct: 256 RNAPAIIFIDELDSIGR-------------KRGAGIGGGHDEREQTLNQILSEMDGFEKD 302

Query: 152 SRFTLIAATTRVGLLTNPL--QDRFGIPIRLNFYEIEDLKTIVQ---RGAKLTGLAVTDE 206
           +   ++AAT R  +L   L    RF   + +    +E+ K I+Q   RG K         
Sbjct: 303 TSVIVLAATNRPDILDPALLRPGRFDRQVVIGLPTLEERKEILQVHMRGKKFA------- 355

Query: 207 AACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKM 258
              ++   +R TP+ +G  L+ + + A +  A+    EI +A   + A+DK+
Sbjct: 356 PDVDVNNLARLTPQFSGADLKNLVNEAALQAARENASEITNAH-FQAALDKI 406


>gi|269128700|ref|YP_003302070.1| ATP-dependent metalloprotease FtsH [Thermomonospora curvata DSM
           43183]
 gi|268313658|gb|ACZ00033.1| ATP-dependent metalloprotease FtsH [Thermomonospora curvata DSM
           43183]
          Length = 672

 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           VL  GPPG GKT LA+ VA E GV F S SG    +   G  A+ + +L ++       +
Sbjct: 200 VLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFEQAKANAPSI 259

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 260 IFIDEI 265


>gi|187935018|ref|YP_001884419.1| ATP-dependent metallopeptidase HflB [Clostridium botulinum B str.
           Eklund 17B]
 gi|187723171|gb|ACD24392.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum B str.
           Eklund 17B]
          Length = 601

 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ ++ E GV F S SG
Sbjct: 195 VLLVGPPGTGKTLLAKAISGEAGVPFFSISG 225


>gi|167038793|ref|YP_001661778.1| sigma-54 factor interaction domain-containing protein
           [Thermoanaerobacter sp. X514]
 gi|307723363|ref|YP_003903114.1| PTS system transcriptional activator [Thermoanaerobacter sp. X513]
 gi|166853033|gb|ABY91442.1| sigma-54 factor, interaction domain-containing protein
           [Thermoanaerobacter sp. X514]
 gi|307580424|gb|ADN53823.1| PTS system transcriptional activator [Thermoanaerobacter sp. X513]
          Length = 977

 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 81/192 (42%), Gaps = 44/192 (22%)

Query: 5   EGLLSRNVSQEDADISLLRPRT---LEEFTGQVEACSNLKVFIEAAKARA----EALDHV 57
           + L+ R+  + D  ++   P+T   L  F   + +  +LKV I  AKA        L H 
Sbjct: 103 DNLVQRSTIKNDT-VNFETPKTAKSLLSFKEIIGSEGSLKVQISLAKAAVLYPPHGL-HT 160

Query: 58  LFVGPPGLGKTTLAQVV---ARELGVNFRSTSGPVIAKAGDLA----------------- 97
           L VGP G GK+ LA+ +   A E G  F   +  V+    D A                 
Sbjct: 161 LIVGPSGSGKSQLAEAMYNYAIESG-RFNENAPFVVFNCADYADNPQLLMAQLFGYVKGA 219

Query: 98  --------ALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKI 149
                   A L    D  +LF+DE+HRL    +EIL+  ++  +   + GE  S R  +I
Sbjct: 220 FTGADTAKAGLVEKADGGILFLDEVHRLPSEGQEILFYLLDKGKFRRL-GETESTREAQI 278

Query: 150 NLSRFTLIAATT 161
                 LIAATT
Sbjct: 279 -----MLIAATT 285


>gi|113461576|ref|YP_719645.1| ATP-dependent protease ATP-binding subunit ClpX [Haemophilus somnus
           129PT]
 gi|122945369|sp|Q0I4F0|CLPX_HAES1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|112823619|gb|ABI25708.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Haemophilus
           somnus 129PT]
          Length = 414

 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD--------LAALLTNLE--- 104
           ++L +GP G GKT LAQ +AR L V F       + +AG         L  LL N +   
Sbjct: 112 NILLIGPTGSGKTLLAQTLARMLNVPFAMADATTLTEAGYVGEDVENVLQKLLQNCDYDI 171

Query: 105 ---DRDVLFIDEIHRLS 118
               + +++IDEI +++
Sbjct: 172 EKAQQGIIYIDEIDKIT 188


>gi|60115356|gb|AAX14030.1| ATP-binding subunit heat shock protein ClpX [Azospirillum
           brasilense]
          Length = 422

 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L VGP G GKT LAQ +AR + V F       + +AG +   + N+         
Sbjct: 110 AKSNILLVGPTGCGKTLLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAAR 169

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDE+ ++S
Sbjct: 170 LNRRAAQRGIVYIDEVDKIS 189


>gi|71281243|ref|YP_270451.1| ATP-dependent protease ATP-binding subunit ClpX [Colwellia
           psychrerythraea 34H]
 gi|123631419|sp|Q47XL9|CLPX_COLP3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|71146983|gb|AAZ27456.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Colwellia
           psychrerythraea 34H]
          Length = 424

 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+            
Sbjct: 115 NILLIGPTGSGKTLLAQTLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 174

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 175 EKAQRGIVYIDEIDKIS 191


>gi|9294440|dbj|BAB02560.1| unnamed protein product [Arabidopsis thaliana]
          Length = 270

 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           +L  GPPG GKT LA+ +A E G NF S +G  +     GD   L   L          +
Sbjct: 19  ILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVI 78

Query: 109 LFIDEIHRL 117
           +F+DE+  L
Sbjct: 79  IFVDEVDSL 87


>gi|116668719|ref|YP_829652.1| Mername-AA223 peptidase [Arthrobacter sp. FB24]
 gi|116608828|gb|ABK01552.1| membrane protease FtsH catalytic subunit [Arthrobacter sp. FB24]
          Length = 689

 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 4/58 (6%)

Query: 34  VEACSNLKVFI-EAAKARA---EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VE    +K F+ E AK +A   +    VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 178 VEELQEIKEFLQEPAKFQAVGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISG 235


>gi|46190461|ref|ZP_00121496.2| COG1219: ATP-dependent protease Clp, ATPase subunit
           [Bifidobacterium longum DJO10A]
 gi|189439547|ref|YP_001954628.1| ATP-dependent protease ATP-binding subunit ClpX [Bifidobacterium
           longum DJO10A]
 gi|189427982|gb|ACD98130.1| ATP-dependent Clp protease ATPase subunit [Bifidobacterium longum
           DJO10A]
          Length = 459

 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---ED 105
           A  ++L +GP G+GKT LAQ +AR + V F  T    + +AG    D+  +L  L    D
Sbjct: 146 AKSNILLLGPTGVGKTYLAQALARVMNVPFVITDATTLTEAGYVGDDVETVLQRLLQAAD 205

Query: 106 RDV-------LFIDEIHRLS 118
            DV       ++IDEI +++
Sbjct: 206 GDVSRAQHGIIYIDEIDKIA 225


>gi|326504648|dbj|BAK06615.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 920

 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT+LA   A +LG N  + +GP I
Sbjct: 350 ILLYGPPGTGKTSLASSCAYDLGANLFTINGPEI 383



 Score = 40.0 bits (92), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 8/71 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGD----LAALLTNLEDR--DV 108
           +L +GPPG  KT +A+ VA E  +NF +  GP +     GD    + +L    +D    +
Sbjct: 679 LLMIGPPGCSKTLMARAVASEAKMNFLAVKGPELFSKWVGDSEKAVRSLFAKAKDNAPAI 738

Query: 109 LFIDEIHRLSI 119
           LF DEI  L++
Sbjct: 739 LFFDEIDGLAV 749


>gi|315049065|ref|XP_003173907.1| replication factor C protein subunit 3 [Arthroderma gypseum CBS
           118893]
 gi|311341874|gb|EFR01077.1| replication factor C protein subunit 3 [Arthroderma gypseum CBS
           118893]
          Length = 397

 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 5/56 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           RP TL++ +G  +  + +  F+E+ +     L H+L  GPPG GKT+    +AR +
Sbjct: 52  RPDTLDDVSGHQDIIATINRFVESNR-----LPHLLLYGPPGTGKTSTILALARRI 102


>gi|296447237|ref|ZP_06889167.1| ATP-dependent metalloprotease FtsH [Methylosinus trichosporium
           OB3b]
 gi|296255296|gb|EFH02393.1| ATP-dependent metalloprotease FtsH [Methylosinus trichosporium
           OB3b]
          Length = 637

 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           +L VGPPG GKT LA+ VA E GV F S +G
Sbjct: 201 ILLVGPPGTGKTLLARAVAGEAGVPFYSITG 231


>gi|284926235|gb|ADC28587.1| putative membrane bound ATPase [Campylobacter jejuni subsp. jejuni
           IA3902]
          Length = 538

 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG+GKT +A+ VA E GV F   SG
Sbjct: 188 VLMVGPPGVGKTLIAKAVAGEAGVPFFYQSG 218


>gi|283956403|ref|ZP_06373883.1| putative membrane bound ATPase [Campylobacter jejuni subsp. jejuni
           1336]
 gi|283792123|gb|EFC30912.1| putative membrane bound ATPase [Campylobacter jejuni subsp. jejuni
           1336]
          Length = 536

 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG+GKT +A+ VA E GV F   SG
Sbjct: 186 VLMVGPPGVGKTLIAKAVAGEAGVPFFYQSG 216


>gi|297567008|ref|YP_003685980.1| ATP-dependent protease La [Meiothermus silvanus DSM 9946]
 gi|296851457|gb|ADH64472.1| ATP-dependent protease La [Meiothermus silvanus DSM 9946]
          Length = 817

 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 81/211 (38%), Gaps = 46/211 (21%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD----------------LAALL 100
           +LFVGPPG+GKT++A+ +A+ LG  +   S   +    D                + AL 
Sbjct: 366 LLFVGPPGVGKTSIAKSIAKSLGRKYVRISLGGVRDESDIRGHRRTYIGAMPGRIIQALR 425

Query: 101 TNLEDRDVLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLS 152
                  VL +DE+ +L +  +        E+L PA      D  +G       V  ++S
Sbjct: 426 QAGSKNPVLLLDEVDKLGVSYQGDPASALLELLDPAQNKEFTDHYLG-------VPFDMS 478

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL---------KTIVQRGAKLTGLAV 203
               I        +  PL DR  +    ++ E E L         + +++ G K   + +
Sbjct: 479 ETLFICTANFPENIPGPLMDRMELIEFTSYIEQEKLEIAKRYLLPRQMLENGLKENQVVI 538

Query: 204 TDEAACEIAMRS------RGTPRIAGRLLRR 228
           T+ A   +          R   R  G LLR+
Sbjct: 539 TEAALSRLITHYTREAGVRNLEREIGSLLRK 569


>gi|226363733|ref|YP_002781515.1| ATP-dependent protease FtsH [Rhodococcus opacus B4]
 gi|226242222|dbj|BAH52570.1| ATP-dependent protease FtsH [Rhodococcus opacus B4]
          Length = 768

 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 14/94 (14%)

Query: 34  VEACSNLKVFIEAAKARAEAL-----DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VE    +K F++   AR +AL       VL  GPPG GKT LA+ VA E GV F + SG 
Sbjct: 175 VEELYEIKDFLQNP-ARYQALGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGS 233

Query: 89  VIAK--AGDLAALLTNLEDRD------VLFIDEI 114
              +   G  A+ + ++ D+       ++F+DEI
Sbjct: 234 DFVEMFVGVGASRVRDMFDQAKQNSPCIIFVDEI 267


>gi|170516913|gb|ACB15392.1| ClpX [Bifidobacterium longum]
          Length = 467

 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---ED 105
           A  ++L +GP G+GKT LAQ +AR + V F  T    + +AG    D+  +L  L    D
Sbjct: 171 AKSNILLLGPTGVGKTYLAQALARVMNVPFVITDATTLTEAGYVGDDVETVLQRLLQAAD 230

Query: 106 RDV-------LFIDEIHRLS 118
            DV       ++IDEI +++
Sbjct: 231 GDVSRAQHGIIYIDEIDKIA 250


>gi|189024263|ref|YP_001935031.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella abortus
           S19]
 gi|260546575|ref|ZP_05822314.1| ATP-dependent protease ATP-binding subunit [Brucella abortus NCTC
           8038]
 gi|238689370|sp|B2S5W0|CLPX_BRUA1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|189019835|gb|ACD72557.1| ATP-dependent protease ATP-binding subunit [Brucella abortus S19]
 gi|260095625|gb|EEW79502.1| ATP-dependent protease ATP-binding subunit [Brucella abortus NCTC
           8038]
          Length = 424

 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L VGP G GKT LAQ +AR + V F       + +AG +   + N+         
Sbjct: 112 AKSNILLVGPTGCGKTYLAQTLARIIDVPFIMADATTLTQAGYVGEDVENIILKLLQAAD 171

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDE+ ++S
Sbjct: 172 YNVERAQRGIVYIDEVDKIS 191


>gi|154148871|ref|YP_001406629.1| putative cell division protease FtsH-like protein [Campylobacter
           hominis ATCC BAA-381]
 gi|153804880|gb|ABS51887.1| putative Cell division protease FtsH-like protein [Campylobacter
           hominis ATCC BAA-381]
          Length = 561

 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 19/36 (52%), Positives = 24/36 (66%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK 92
           VL +GPPG+GKT +A+ VA E GV F   SG   A+
Sbjct: 199 VLMIGPPGVGKTLIAKAVAGEAGVPFFYQSGASFAE 234


>gi|148926085|ref|ZP_01809771.1| putative membrane bound ATPase [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|145845564|gb|EDK22656.1| putative membrane bound ATPase [Campylobacter jejuni subsp. jejuni
           CG8486]
          Length = 527

 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG+GKT +A+ VA E GV F   SG
Sbjct: 177 VLMVGPPGVGKTLIAKAVAGEAGVPFFYQSG 207


>gi|124003041|ref|ZP_01687892.1| respiratory chain complexes assembly protein RCA1 [Microscilla
           marina ATCC 23134]
 gi|123991691|gb|EAY31099.1| respiratory chain complexes assembly protein RCA1 [Microscilla
           marina ATCC 23134]
          Length = 696

 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 35/65 (53%), Gaps = 8/65 (12%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VL 109
           L VGPPG GKT LA+ VA E GV F S SG       V   A  +  L    +++   ++
Sbjct: 244 LLVGPPGTGKTLLAKAVAGEAGVPFFSLSGSDFVEMFVGVGAARVRDLFKQAKEKAPCIV 303

Query: 110 FIDEI 114
           FIDEI
Sbjct: 304 FIDEI 308


>gi|57237830|ref|YP_179078.1| cell division protein FtsH, putative [Campylobacter jejuni RM1221]
 gi|57166634|gb|AAW35413.1| cell division protein FtsH, putative [Campylobacter jejuni RM1221]
          Length = 538

 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG+GKT +A+ VA E GV F   SG
Sbjct: 188 VLMVGPPGVGKTLIAKAVAGEAGVPFFYQSG 218


>gi|23465516|ref|NP_696119.1| ATP-dependent protease ATP-binding subunit ClpX [Bifidobacterium
           longum NCC2705]
 gi|23326176|gb|AAN24755.1| ATP-dependent specificity component of the Clp protease
           [Bifidobacterium longum NCC2705]
          Length = 497

 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---ED 105
           A  ++L +GP G+GKT LAQ +AR + V F  T    + +AG    D+  +L  L    D
Sbjct: 171 AKSNILLLGPTGVGKTYLAQALARVMNVPFVITDATTLTEAGYVGDDVETVLQRLLQAAD 230

Query: 106 RDV-------LFIDEIHRLS 118
            DV       ++IDEI +++
Sbjct: 231 GDVSRAQHGIIYIDEIDKIA 250


>gi|86136457|ref|ZP_01055036.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Roseobacter
           sp. MED193]
 gi|85827331|gb|EAQ47527.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Roseobacter
           sp. MED193]
          Length = 776

 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 73/161 (45%), Gaps = 23/161 (14%)

Query: 10  RNVSQEDADISLLRPRTLEEFT-GQVEACSNLKVFIEAAKA----RAEALDHVLFVGPPG 64
           ++V+++DA++     ++L+    GQ +A   L   I+ A+A      + + + LF GP G
Sbjct: 452 KSVTKDDAEVLKDLEKSLKRVVFGQDDAIDALSSAIKLARAGLREPEKPIGNYLFAGPTG 511

Query: 65  LGKTTLAQVVARELGVNF---------------RSTSGPVIAKAGDLAALLTNLEDRD-- 107
           +GKT +A+ +A  LGV                 R    P      D   LLT+  D+   
Sbjct: 512 VGKTEVAKQLADTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGVDQHPH 571

Query: 108 -VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSV 147
            VL +DEI +    V  IL   M++ QL    G   + R+V
Sbjct: 572 CVLLLDEIEKAHPDVFNILLQVMDNGQLTDHNGRAVNFRNV 612



 Score = 36.2 bits (82), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 69/156 (44%), Gaps = 42/156 (26%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           N    + DI  L  R+ E     VE C  ++V     K      ++ L VG PG+GKT +
Sbjct: 190 NAKSREGDIDPLIGRSHE-----VERC--IQVLCRRRK------NNPLLVGDPGVGKTAI 236

Query: 71  AQVVAREL-----------GVNFRSTSGPVIAKA---GD----LAALLTNLEDR--DVLF 110
           A+ +AR++              F    G ++A     GD    L A++T LED    VLF
Sbjct: 237 AEGLARKIVQGEVPNVLAETTIFSLDMGALLAGTRYRGDFEERLKAVVTELEDHPDGVLF 296

Query: 111 IDEIHRL---------SIIVEEILYPAMEDFQLDLM 137
           IDEIH +         ++    +L PA++  +L  M
Sbjct: 297 IDEIHTVIGAGATSGGAMDASNLLKPALQGGKLRTM 332


>gi|170718337|ref|YP_001783565.1| ATP-dependent protease ATP-binding subunit ClpX [Haemophilus somnus
           2336]
 gi|189044137|sp|B0UW19|CLPX_HAES2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|168826466|gb|ACA31837.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Haemophilus
           somnus 2336]
          Length = 414

 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD--------LAALLTNLE--- 104
           ++L +GP G GKT LAQ +AR L V F       + +AG         L  LL N +   
Sbjct: 112 NILLIGPTGSGKTLLAQTLARMLNVPFAMADATTLTEAGYVGEDVENVLQKLLQNCDYDI 171

Query: 105 ---DRDVLFIDEIHRLS 118
               + +++IDEI +++
Sbjct: 172 EKAQQGIIYIDEIDKIT 188


>gi|68482739|ref|XP_714679.1| potential mitochondrial ATP-dependent protease [Candida albicans
           SC5314]
 gi|74679828|sp|Q59YV0|LONP2_CANAL RecName: Full=Lon protease homolog 2, peroxisomal
 gi|46436267|gb|EAK95632.1| potential mitochondrial ATP-dependent protease [Candida albicans
           SC5314]
          Length = 1258

 Score = 40.4 bits (93), Expect = 0.41,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 72/184 (39%), Gaps = 44/184 (23%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTS-----------GPVIAKAGDLAALLTNLED 105
           ++  GPPG GKT+LA+ +A  LG NF+  S           G      G +  LL     
Sbjct: 724 IMLAGPPGTGKTSLAKSIASALGRNFQRISLGGIKDESEIRGHRRTYVGAMPGLLIQALR 783

Query: 106 RD-----VLFIDEIHRL---------------SIIVEEILYPAMEDFQLDLMVGEGPSAR 145
           +      V+ +DEI ++               S  + E+L P   +  +D  +G      
Sbjct: 784 KSRCMNPVILLDEIDKVIGGNSGGVNKFNGDPSAALLEVLDPEQNNTFIDHYLG------ 837

Query: 146 SVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED-----LKTIVQRGAKLTG 200
              ++LS+   I        +T PL DR  + I +  Y+  +      K ++ R  K  G
Sbjct: 838 -FPVDLSQVIFICTANDPWNMTRPLLDRLEM-IEIGAYDYNEKLIIGKKYLLPRQIKRNG 895

Query: 201 LAVT 204
             VT
Sbjct: 896 FPVT 899


>gi|110637033|ref|YP_677240.1| cell division protein, ATP-dependent metalloprotease [Cytophaga
           hutchinsonii ATCC 33406]
 gi|110279714|gb|ABG57900.1| membrane protease FtsH catalytic subunit [Cytophaga hutchinsonii
           ATCC 33406]
          Length = 692

 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 35/65 (53%), Gaps = 8/65 (12%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VL 109
           L VGPPG GKT LA+ VA E GV F S SG       V   A  +  L    +++   ++
Sbjct: 241 LLVGPPGTGKTLLAKAVAGEAGVPFFSLSGSDFVEMFVGVGAARVRDLFKQAKEKAPCII 300

Query: 110 FIDEI 114
           FIDEI
Sbjct: 301 FIDEI 305


>gi|113476986|ref|YP_723047.1| FtsH-2 peptidase [Trichodesmium erythraeum IMS101]
 gi|110168034|gb|ABG52574.1| FtsH-2 peptidase. Metallo peptidase. MEROPS family M41
           [Trichodesmium erythraeum IMS101]
          Length = 621

 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 45/94 (47%), Gaps = 11/94 (11%)

Query: 29  EFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           E T  V+     K F E     A     +L VGPPG GKT L++ VA E GV F S SG 
Sbjct: 172 ELTEIVDFLKTPKCFTEIG---ARIPKGLLLVGPPGTGKTLLSKAVAGEAGVPFFSISGS 228

Query: 89  VIAK--AGDLAALLTNLEDRD------VLFIDEI 114
              +   G  AA + +L  +       ++FIDEI
Sbjct: 229 EFVELFVGTGAARVRDLFKQAKKKAPCIIFIDEI 262


>gi|329848734|ref|ZP_08263762.1| metalloprotease [Asticcacaulis biprosthecum C19]
 gi|328843797|gb|EGF93366.1| metalloprotease [Asticcacaulis biprosthecum C19]
          Length = 627

 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 37/65 (56%), Gaps = 8/65 (12%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VL 109
           L VGPPG GKT LA+ VA E GV F S SG    +   G  A+ + ++ D+       ++
Sbjct: 196 LLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDMFDQAKKNAPCII 255

Query: 110 FIDEI 114
           FIDEI
Sbjct: 256 FIDEI 260


>gi|322368817|ref|ZP_08043384.1| AAA family ATPase, CDC48 subfamily protein [Haladaptatus
           paucihalophilus DX253]
 gi|320551548|gb|EFW93195.1| AAA family ATPase, CDC48 subfamily protein [Haladaptatus
           paucihalophilus DX253]
          Length = 753

 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 23/34 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL  GPPG GKT +A+ VA E+   F++ SGP I
Sbjct: 227 VLLHGPPGTGKTLMAKAVANEIDAYFQTISGPEI 260



 Score = 39.7 bits (91), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 19/37 (51%), Positives = 22/37 (59%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +A   VL  GPPG GKT +A+ VA E   NF S  GP
Sbjct: 495 QAAKGVLMYGPPGTGKTLMAKAVANESDSNFISIKGP 531


>gi|302874447|ref|YP_003843080.1| Sigma 54 interacting domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|307690946|ref|ZP_07633392.1| Sigma 54 interacting domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|302577304|gb|ADL51316.1| Sigma 54 interacting domain protein [Clostridium cellulovorans
           743B]
          Length = 567

 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 5/52 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           RP+  EE  GQ E    LK  +     +     HV+  GPPG+GKT  A++V
Sbjct: 66  RPKNFEEIIGQEEGIKALKAALCGGNPQ-----HVIIYGPPGIGKTAAARLV 112


>gi|295444927|ref|NP_001171384.1| spermatogenesis-associated protein 5 [Sus scrofa]
 gi|292485838|gb|ADE28534.1| spermatogenesis associated 5 [Sus scrofa]
          Length = 887

 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALL------TNLEDRDV 108
           VL  GPPG GKT +A+ VA E+G      +GP +I+K  G+  A L        L    +
Sbjct: 384 VLLYGPPGTGKTMIARAVANEVGAYVSVINGPEIISKFYGETEARLRQIFAEATLRHPSI 443

Query: 109 LFIDEIHRLS 118
           +FIDE+  L 
Sbjct: 444 IFIDELDALC 453



 Score = 38.5 bits (88), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 16/32 (50%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG  KT +A+ +A E G+NF +  GP
Sbjct: 658 VLLYGPPGCSKTMIAKALANESGLNFLAIKGP 689


>gi|315498688|ref|YP_004087492.1| ATP-dependent metalloprotease ftsh [Asticcacaulis excentricus CB
           48]
 gi|315416700|gb|ADU13341.1| ATP-dependent metalloprotease FtsH [Asticcacaulis excentricus CB
           48]
          Length = 633

 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 20/30 (66%), Positives = 21/30 (70%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           L VGPPG GKT LA+ VA E GV F S SG
Sbjct: 190 LLVGPPGTGKTMLARAVAGEAGVPFFSISG 219


>gi|193215173|ref|YP_001996372.1| ATP-dependent metalloprotease FtsH [Chloroherpeton thalassium ATCC
           35110]
 gi|193088650|gb|ACF13925.1| ATP-dependent metalloprotease FtsH [Chloroherpeton thalassium ATCC
           35110]
          Length = 640

 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL +GPPG GKT LA+ VA E GV F S SG
Sbjct: 229 VLLLGPPGTGKTLLAKAVAGEAGVPFFSMSG 259


>gi|154341847|ref|XP_001566875.1| AAA family ATPase-like protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 944

 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDRD------V 108
           VL  GPPG  KT LA+ +A E  +NF S  GP V +K  GD    + ++ +R       V
Sbjct: 712 VLLYGPPGCSKTMLAKALANESRMNFISVKGPEVFSKWVGDSEKAVRDIFERARAASPCV 771

Query: 109 LFIDEI 114
           +FIDE+
Sbjct: 772 VFIDEL 777


>gi|118577019|ref|YP_876762.1| AAA ATPase [Cenarchaeum symbiosum A]
 gi|118195540|gb|ABK78458.1| AAA ATPase [Cenarchaeum symbiosum A]
          Length = 709

 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 36/81 (44%), Gaps = 18/81 (22%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR---------- 106
           VL  GPPG GKT LA+ VA E   NF    GP I     +       E+R          
Sbjct: 214 VLLYGPPGTGKTLLAKAVAGETNANFSYIGGPEI-----MGKYYGESEERLREMFREAEE 268

Query: 107 ---DVLFIDEIHRLSIIVEEI 124
               ++FIDEI  ++   +E+
Sbjct: 269 NAPSIIFIDEIDSIAPKRDEV 289


>gi|50286221|ref|XP_445539.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49524844|emb|CAG58450.1| unnamed protein product [Candida glabrata]
          Length = 834

 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 569 VLLWGPPGCGKTLLAKAVANESRANFISIKGP 600



 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL  GPPG GKT++A  +A EL V F S S P +
Sbjct: 235 VLLHGPPGCGKTSIANALAGELQVPFISISAPSV 268


>gi|16329797|ref|NP_440525.1| cell division protein FtsH [Synechocystis sp. PCC 6803]
 gi|2492511|sp|P73179|FTSH1_SYNY3 RecName: Full=ATP-dependent zinc metalloprotease FtsH 1
 gi|1652282|dbj|BAA17205.1| cell division protein; FtsH [Synechocystis sp. PCC 6803]
          Length = 665

 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL +GPPG GKT LA+ +A E GV F S SG
Sbjct: 247 VLLIGPPGTGKTLLAKAIAGEAGVPFFSISG 277


>gi|88855130|ref|ZP_01129795.1| ATP-dependent protease ATP-binding subunit [marine actinobacterium
           PHSC20C1]
 gi|88815658|gb|EAR25515.1| ATP-dependent protease ATP-binding subunit [marine actinobacterium
           PHSC20C1]
          Length = 425

 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---ED 105
           A  ++L +GP G GKT LAQ +A+ L V F       + +AG    D+  +L  L    D
Sbjct: 117 AKSNILLIGPTGCGKTYLAQTLAKRLNVPFAVADATALTEAGYVGEDVENILLKLIQAAD 176

Query: 106 RDV-------LFIDEIHRLS 118
            DV       ++IDEI +++
Sbjct: 177 YDVKRAETGIIYIDEIDKIA 196


>gi|306836929|ref|ZP_07469881.1| cell division protein HflB [Corynebacterium accolens ATCC 49726]
 gi|304567184|gb|EFM42797.1| cell division protein HflB [Corynebacterium accolens ATCC 49726]
          Length = 249

 Score = 40.4 bits (93), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 203 VLLYGPPGTGKTLLARAVAGEAGVPFYSISG 233


>gi|237749838|ref|ZP_04580318.1| membrane bound zinc metallopeptidase [Helicobacter bilis ATCC
           43879]
 gi|229374588|gb|EEO24979.1| membrane bound zinc metallopeptidase [Helicobacter bilis ATCC
           43879]
          Length = 635

 Score = 40.4 bits (93), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           VL VGPPG GKT LA+ VA E  V F S SG    +   G  A+ + +L ++       +
Sbjct: 210 VLLVGPPGTGKTLLAKAVAGEANVPFFSMSGSSFIEMFVGLGASRVRDLFEKAKKEAPSI 269

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 270 IFIDEI 275


>gi|261368793|ref|ZP_05981676.1| cell division protein FtsH [Subdoligranulum variabile DSM 15176]
 gi|282569057|gb|EFB74592.1| cell division protein FtsH [Subdoligranulum variabile DSM 15176]
          Length = 626

 Score = 40.4 bits (93), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F S +G
Sbjct: 205 VLLVGPPGTGKTLLARAVAGEAGVPFFSIAG 235


>gi|222424701|dbj|BAH20304.1| AT2G30950 [Arabidopsis thaliana]
          Length = 586

 Score = 40.4 bits (93), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL +GPPG GKT LA+ +A E GV F S SG
Sbjct: 154 VLLIGPPGTGKTLLAKAIAGEAGVPFFSISG 184


>gi|195451441|ref|XP_002072921.1| GK13431 [Drosophila willistoni]
 gi|194169006|gb|EDW83907.1| GK13431 [Drosophila willistoni]
          Length = 680

 Score = 40.4 bits (93), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108
           VL VGPPG GKT LA+ VA E G  F + S   +     G+   L      +        
Sbjct: 437 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPST 496

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 497 IFIDEIDAL 505


>gi|145257829|ref|XP_001401861.1| protein YME1 [Aspergillus niger CBS 513.88]
 gi|134074464|emb|CAK38759.1| unnamed protein product [Aspergillus niger]
          Length = 803

 Score = 40.4 bits (93), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F   SG       V   A  +  L T    +   +
Sbjct: 374 VLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEVYVGVGAKRVRELFTQARSKSPAI 433

Query: 109 LFIDEI 114
           +FIDE+
Sbjct: 434 IFIDEL 439


>gi|94970228|ref|YP_592276.1| ATPase [Candidatus Koribacter versatilis Ellin345]
 gi|94552278|gb|ABF42202.1| ATPase associated with various cellular activities, AAA_3
           [Candidatus Koribacter versatilis Ellin345]
          Length = 319

 Score = 40.4 bits (93), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 12/91 (13%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDL--AALLTNLEDR------- 106
           H+L  G PG+GKTTL   VAR + VNF+           D+   ++ + +E +       
Sbjct: 43  HLLIEGVPGVGKTTLGHAVARAMDVNFQRVQFTSDMLPSDVLGISVYSTVEQKFEFKRGP 102

Query: 107 ---DVLFIDEIHRLSIIVEEILYPAMEDFQL 134
              +VL  DEI+R +   +  L  AM + Q+
Sbjct: 103 IFTNVLLADEINRTTPKTQSALLEAMNENQV 133


>gi|145358053|ref|NP_568311.2| FTSH6 (FTSH PROTEASE 6); ATP-dependent peptidase/ ATPase/
           metallopeptidase/ peptidase/ zinc ion binding
           [Arabidopsis thaliana]
 gi|122231638|sp|Q1PDW5|FTSH6_ARATH RecName: Full=ATP-dependent zinc metalloprotease FTSH 6,
           chloroplastic; Short=AtFTSH6; Flags: Precursor
 gi|91806862|gb|ABE66158.1| FtsH protease [Arabidopsis thaliana]
 gi|332004753|gb|AED92136.1| cell division protease ftsH-6 [Arabidopsis thaliana]
          Length = 688

 Score = 40.4 bits (93), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 7/69 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKAR-------AEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T E+  G  EA  + +  +E  K         A+    VL  GPPG GKT LA+ +A E 
Sbjct: 222 TFEDVAGVDEAKQDFEEIVEFLKTPEKFSALGAKIPKGVLLTGPPGTGKTLLAKAIAGEA 281

Query: 79  GVNFRSTSG 87
           GV F S SG
Sbjct: 282 GVPFFSLSG 290


>gi|297605428|ref|NP_001057200.2| Os06g0225900 [Oryza sativa Japonica Group]
 gi|51535008|dbj|BAD37292.1| spastin-like [Oryza sativa Japonica Group]
 gi|255676849|dbj|BAF19114.2| Os06g0225900 [Oryza sativa Japonica Group]
          Length = 271

 Score = 40.4 bits (93), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK-----AGDLAALLTNLEDR---DV 108
           +L  GPPG GKT LA+ +A E G NF S +G  +       A  L   L +   R    +
Sbjct: 19  ILLFGPPGTGKTLLAKALATEAGANFISITGSNLTSKWFGDAEKLTKALFSFASRLAPVI 78

Query: 109 LFIDEIHRL 117
           +F+DE+  L
Sbjct: 79  IFVDEVDSL 87


>gi|22299375|ref|NP_682622.1| cell division protein [Thermosynechococcus elongatus BP-1]
 gi|22295558|dbj|BAC09384.1| cell division protein [Thermosynechococcus elongatus BP-1]
          Length = 644

 Score = 40.4 bits (93), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL +GPPG GKT LA+ +A E GV F S SG
Sbjct: 208 VLLIGPPGTGKTLLAKAIAGEAGVPFFSISG 238


>gi|19909896|dbj|BAB87822.1| katanin [Arabidopsis thaliana]
          Length = 523

 Score = 40.4 bits (93), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLED------RDV 108
           VL  GPPG GKT LA+ VA E G  F + S   +A    G+   ++  L D         
Sbjct: 275 VLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPST 334

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 335 IFIDEIDSL 343


>gi|222823705|ref|YP_002575279.1| cell division protein FtsH [Campylobacter lari RM2100]
 gi|222538927|gb|ACM64028.1| cell division protein FtsH [Campylobacter lari RM2100]
          Length = 532

 Score = 40.4 bits (93), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG+GKT +A+ VA E GV F   SG
Sbjct: 182 VLLVGPPGVGKTLIAKAVAGEAGVPFFYQSG 212


>gi|110633523|ref|YP_673731.1| ATP-dependent protease ATP-binding subunit [Mesorhizobium sp. BNC1]
 gi|123162493|sp|Q11J59|CLPX_MESSB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|110284507|gb|ABG62566.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Chelativorans
           sp. BNC1]
          Length = 424

 Score = 40.4 bits (93), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LAQ +AR + V F       + +AG +   + N+            
Sbjct: 115 NILLIGPTGCGKTLLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNV 174

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 175 ERAQRGIVYIDEIDKIS 191


>gi|332004754|gb|AED92137.1| cell division protease ftsH-6 [Arabidopsis thaliana]
          Length = 709

 Score = 40.4 bits (93), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 7/69 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKAR-------AEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T E+  G  EA  + +  +E  K         A+    VL  GPPG GKT LA+ +A E 
Sbjct: 220 TFEDVAGVDEAKQDFEEIVEFLKTPEKFSALGAKIPKGVLLTGPPGTGKTLLAKAIAGEA 279

Query: 79  GVNFRSTSG 87
           GV F S SG
Sbjct: 280 GVPFFSLSG 288


>gi|323456794|gb|EGB12660.1| hypothetical protein AURANDRAFT_18406 [Aureococcus anophagefferens]
          Length = 420

 Score = 40.4 bits (93), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFR--STSGPVIAKAGDLAALLTNL------EDRDV 108
           +L  GPPG GK+ LA+ VA E    F   S+S  V    G+   L+ NL      E+  +
Sbjct: 162 ILLYGPPGTGKSFLAKAVATEADAQFFAVSSSDLVSKWQGESERLVKNLFEMARHEEHAI 221

Query: 109 LFIDEIHRL 117
           +FIDEI  +
Sbjct: 222 IFIDEIDSM 230


>gi|321250239|ref|XP_003191739.1| helicase [Cryptococcus gattii WM276]
 gi|317458206|gb|ADV19952.1| Helicase, putative [Cryptococcus gattii WM276]
          Length = 752

 Score = 40.4 bits (93), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 20/37 (54%), Positives = 22/37 (59%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +A   VL  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 438 DAPSGVLLWGPPGCGKTLLAKAVANESRANFISVKGP 474


>gi|297484618|ref|XP_002694445.1| PREDICTED: spermatogenesis associated 5-like, partial [Bos taurus]
 gi|296478718|gb|DAA20833.1| spermatogenesis associated 5-like [Bos taurus]
          Length = 1004

 Score = 40.4 bits (93), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALL------TNLEDRDV 108
           VL  GPPG GKT +A+ VA E+G      +GP +I+K  G+  A L        L    +
Sbjct: 501 VLLYGPPGTGKTMIARAVANEVGAYVSVINGPEIISKFYGETEARLRQIFAEATLRHPSI 560

Query: 109 LFIDEIHRL 117
           +FIDE+  L
Sbjct: 561 IFIDELDAL 569



 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 16/32 (50%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG  KT +A+ +A E G+NF +  GP
Sbjct: 775 VLLYGPPGCSKTMIAKALANESGLNFLAIKGP 806


>gi|256545930|ref|ZP_05473285.1| cell division protease FtsH family protein 3 [Anaerococcus
           vaginalis ATCC 51170]
 gi|256398352|gb|EEU11974.1| cell division protease FtsH family protein 3 [Anaerococcus
           vaginalis ATCC 51170]
          Length = 695

 Score = 40.4 bits (93), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E  V F S SG    +      A  +  L    +++   +
Sbjct: 209 VLLVGPPGTGKTLLAKAVAGEANVPFFSISGSEFVEMFVGMGASKVRDLFKQAKEKAPCI 268

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 269 VFIDEI 274


>gi|289577374|ref|YP_003476001.1| Vesicle-fusing ATPase [Thermoanaerobacter italicus Ab9]
 gi|297543661|ref|YP_003675963.1| Vesicle-fusing ATPase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|289527087|gb|ADD01439.1| Vesicle-fusing ATPase [Thermoanaerobacter italicus Ab9]
 gi|296841436|gb|ADH59952.1| Vesicle-fusing ATPase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 498

 Score = 40.4 bits (93), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 68/142 (47%), Gaps = 29/142 (20%)

Query: 1   MMDREGLLS--RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIE-------AAKARA 51
           +++ +G++S  +N+ + +++IS       E+  GQ  A + LK  ++        +K   
Sbjct: 40  IIENKGIISGSKNIIKPESEISF------EDIGGQSTAIAELKEALDFVINREKISKMGI 93

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNL------ 103
             +  +L  GPPG GKT LA+  A+    +F +TSG   +   AG  A  + NL      
Sbjct: 94  RPIKGILLTGPPGTGKTLLAKAAAKYTNSSFIATSGSEFIEMYAGVGAQRVRNLFKTAKN 153

Query: 104 ------EDRDVLFIDEIHRLSI 119
                 ++  ++FIDEI  L +
Sbjct: 154 IARKEGKNSAIIFIDEIDILGV 175


>gi|311740143|ref|ZP_07713975.1| ATP-dependent metalloprotease FtsH [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311304698|gb|EFQ80769.1| ATP-dependent metalloprotease FtsH [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 785

 Score = 40.4 bits (93), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 203 VLLYGPPGTGKTLLARAVAGEAGVPFYSISG 233


>gi|226227817|ref|YP_002761923.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Gemmatimonas
           aurantiaca T-27]
 gi|226091008|dbj|BAH39453.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Gemmatimonas
           aurantiaca T-27]
          Length = 420

 Score = 40.4 bits (93), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G+GKT LAQ +AR L V F       + +AG    D+  +L  L        
Sbjct: 109 NILLIGPTGVGKTLLAQTLARILDVPFTIADATTLTEAGYVGEDVENILVRLLQAGDFNV 168

Query: 104 --EDRDVLFIDEIHRLS 118
              +R +++IDEI +++
Sbjct: 169 AECERGIVYIDEIDKIA 185


>gi|225377814|ref|ZP_03755035.1| hypothetical protein ROSEINA2194_03465 [Roseburia inulinivorans DSM
           16841]
 gi|225210325|gb|EEG92679.1| hypothetical protein ROSEINA2194_03465 [Roseburia inulinivorans DSM
           16841]
          Length = 456

 Score = 40.4 bits (93), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 9/96 (9%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPR--TLEEFTGQVEACSNLKVFIE----AAKAR---A 51
           +M R G  +  V +  A + + +    T ++  GQ EA  +L+  ++      K R   A
Sbjct: 177 LMKRMGGGAMGVGKSTAKVYVEKTTGVTFKDVAGQDEAKESLQEVVDFLHNPKKYREIGA 236

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           +     L VGPPG GKT LA+ VA E GV F S +G
Sbjct: 237 KLPKGALLVGPPGTGKTLLAKAVAGEAGVPFFSLAG 272


>gi|223984578|ref|ZP_03634705.1| hypothetical protein HOLDEFILI_02001 [Holdemania filiformis DSM
           12042]
 gi|223963425|gb|EEF67810.1| hypothetical protein HOLDEFILI_02001 [Holdemania filiformis DSM
           12042]
          Length = 772

 Score = 40.4 bits (93), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 98/222 (44%), Gaps = 38/222 (17%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH--VLFVGPPGLGKTTL 70
           ++++ D+  ++ R  E+  G +E   N  +   A K    +L+   +  VGPPG+GKT+L
Sbjct: 306 TEDNEDLKRVQQRLDEDHFG-LEKVKNRIMEYLAVKQMTHSLNAPILCLVGPPGVGKTSL 364

Query: 71  AQVVARELGVNF-RSTSGPVIAKA---GDLAALLTNLEDR------------DVLFIDEI 114
           A+ VAR L   F +++ G V  +A   G     L +L  R             V  IDEI
Sbjct: 365 AKSVARALDRKFVKASLGGVRDEAEIRGHRRTYLGSLPGRIIQGMKKAGVVNPVFLIDEI 424

Query: 115 HRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
            ++        S  + E+L P       D  + E         +LS+   IA    +  +
Sbjct: 425 DKMASDYKGDPSSAMLEVLDPEQNKLFSDNYLEE-------PYDLSKVMFIATANTLDTI 477

Query: 167 TNPLQDRFGIPIRLNFYEIEDL----KTIVQRGAKLTGLAVT 204
              L+DR  I    ++ E+E +    + ++++ A++ GL  +
Sbjct: 478 PAALRDRLEIIELSSYTEVEKVSIAKEHLIRKQAEINGLKAS 519


>gi|241953439|ref|XP_002419441.1| mitochondrial ATP-dependent protease, putative [Candida
           dubliniensis CD36]
 gi|300681037|sp|B9WEC4|LONP2_CANDC RecName: Full=Lon protease homolog 2, peroxisomal
 gi|223642781|emb|CAX43035.1| mitochondrial ATP-dependent protease, putative [Candida
           dubliniensis CD36]
          Length = 1247

 Score = 40.4 bits (93), Expect = 0.42,   Method: Composition-based stats.
 Identities = 46/186 (24%), Positives = 71/186 (38%), Gaps = 45/186 (24%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTS-----------GPVIAKAGDLAALLTNLED 105
           ++  GPPG GKT+LA+ +A  LG NF+  S           G      G +  LL     
Sbjct: 717 IMLAGPPGTGKTSLAKSIASALGRNFQRISLGGIKDESEIRGHRRTYVGAMPGLLIQALR 776

Query: 106 RD-----VLFIDEIHRL----------------SIIVEEILYPAMEDFQLDLMVGEGPSA 144
           +      V+ +DEI ++                S  + E+L P   +  +D  +G     
Sbjct: 777 KSRCMNPVILLDEIDKVIGGNNSGGVNKFNGDPSAALLEVLDPEQNNTFIDHYLG----- 831

Query: 145 RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED-----LKTIVQRGAKLT 199
               I+LS+   I        +T PL DR    I +  Y+  +      K ++ R  K  
Sbjct: 832 --FPIDLSQVIFICTANDPWNMTRPLLDRLET-IEIGAYDYNEKLIIGKKYLLPRQIKRN 888

Query: 200 GLAVTD 205
           G  V D
Sbjct: 889 GFPVVD 894


>gi|218461293|ref|ZP_03501384.1| ATP-dependent protease ATP-binding subunit ClpX [Rhizobium etli Kim
           5]
          Length = 333

 Score = 40.4 bits (93), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  +++ VGP G GKT LAQ +AR + V F       + +AG +   + N+         
Sbjct: 21  AKSNIMLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 80

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDE+ ++S
Sbjct: 81  YNVERAQRGIVYIDEVDKIS 100


>gi|205356716|ref|ZP_03223477.1| putative membrane bound ATPase [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|205345454|gb|EDZ32096.1| putative membrane bound ATPase [Campylobacter jejuni subsp. jejuni
           CG8421]
          Length = 536

 Score = 40.4 bits (93), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG+GKT +A+ VA E GV F   SG
Sbjct: 186 VLMVGPPGVGKTLIAKAVAGEAGVPFFYQSG 216


>gi|157415262|ref|YP_001482518.1| putative membrane bound ATPase [Campylobacter jejuni subsp. jejuni
           81116]
 gi|157386226|gb|ABV52541.1| putative membrane bound ATPase [Campylobacter jejuni subsp. jejuni
           81116]
 gi|307747904|gb|ADN91174.1| cell division protein (ftsH) [Campylobacter jejuni subsp. jejuni
           M1]
 gi|315932133|gb|EFV11076.1| ATPase family associated with various cellular activities (AAA)
           family protein [Campylobacter jejuni subsp. jejuni 327]
          Length = 538

 Score = 40.4 bits (93), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG+GKT +A+ VA E GV F   SG
Sbjct: 188 VLMVGPPGVGKTLIAKAVAGEAGVPFFYQSG 218


>gi|153952493|ref|YP_001397916.1| putative cell division protein FtsH [Campylobacter jejuni subsp.
           doylei 269.97]
 gi|152939939|gb|ABS44680.1| putative cell division protein FtsH [Campylobacter jejuni subsp.
           doylei 269.97]
          Length = 538

 Score = 40.4 bits (93), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG+GKT +A+ VA E GV F   SG
Sbjct: 188 VLMVGPPGVGKTLIAKAVAGEAGVPFFYQSG 218


>gi|115374881|ref|ZP_01462154.1| ATP-dependent protease La [Stigmatella aurantiaca DW4/3-1]
 gi|310820097|ref|YP_003952455.1| ATP-dependent protease la 1 [Stigmatella aurantiaca DW4/3-1]
 gi|115368099|gb|EAU67061.1| ATP-dependent protease La [Stigmatella aurantiaca DW4/3-1]
 gi|309393169|gb|ADO70628.1| ATP-dependent protease La 1 [Stigmatella aurantiaca DW4/3-1]
          Length = 819

 Score = 40.4 bits (93), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 69/166 (41%), Gaps = 40/166 (24%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           + FVGPPG+GKT+LA+ +AR  G  F R + G V  +A              G L   L 
Sbjct: 364 LCFVGPPGVGKTSLARSIARATGRKFVRLSLGGVRDEAEIRGHRRTYIGAMPGKLIQSLK 423

Query: 102 NL-EDRDVLFIDEIHRLSI--------IVEEILYPA----MEDFQLDLMVGEGPSARSVK 148
               +  V  +DEI ++S          + E+L P       D  LDL            
Sbjct: 424 KAGSNNPVFLLDEIDKMSTDFRGDPSAALLEVLDPEQNHNFNDHYLDL-----------D 472

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
            +LS+   I     +  +  PLQDR  + IR+  Y   +  +I +R
Sbjct: 473 YDLSKVMFICTANTMHNIPGPLQDRMEV-IRIAGYTEPEKLSIARR 517


>gi|157110895|ref|XP_001651297.1| spermatogenesis associated factor [Aedes aegypti]
 gi|108883898|gb|EAT48123.1| spermatogenesis associated factor [Aedes aegypti]
          Length = 735

 Score = 40.4 bits (93), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 49/109 (44%), Gaps = 16/109 (14%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKARAEA--------LDHVLFVGPPGLGKTTLAQVVAR 76
           +TL+   G  E    L++ +     R EA        L  +L  GPPG  KTT+A+ +A 
Sbjct: 456 QTLDSIGGMDELKKVLRISVLGPLRRPEAFRRFGMSPLKGILLYGPPGCAKTTIAKCLAA 515

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTN---LEDRDVLFIDEIHRL 117
           E  + F S S      P +  +  L A L N   L    V+F+DEI  L
Sbjct: 516 ESRMTFVSVSAAEVYSPYVGDSEKLIAKLFNQARLSAPAVIFLDEIDSL 564


>gi|7671494|emb|CAB89335.1| FtsH-like protein Pftf precursor-like [Arabidopsis thaliana]
          Length = 687

 Score = 40.4 bits (93), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 7/69 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKAR-------AEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T E+  G  EA  + +  +E  K         A+    VL  GPPG GKT LA+ +A E 
Sbjct: 221 TFEDVAGVDEAKQDFEEIVEFLKTPEKFSALGAKIPKGVLLTGPPGTGKTLLAKAIAGEA 280

Query: 79  GVNFRSTSG 87
           GV F S SG
Sbjct: 281 GVPFFSLSG 289


>gi|319794077|ref|YP_004155717.1| ATP-dependent clp protease, ATP-binding subunit clpx [Variovorax
           paradoxus EPS]
 gi|315596540|gb|ADU37606.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Variovorax
           paradoxus EPS]
          Length = 421

 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+            
Sbjct: 117 NILLIGPTGSGKTLLAQTLARMLDVPFVMADATTLTEAGYVGEDVENIIQKLLQSCNYEV 176

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 177 ERAQRGIVYIDEIDKIS 193


>gi|313220370|emb|CBY31225.1| unnamed protein product [Oikopleura dioica]
          Length = 634

 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 39/78 (50%), Gaps = 5/78 (6%)

Query: 12  VSQEDADISLLR--PRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           V   D + S +R     LEEF   V+  +N   +   AK  A+    +L  GPPG GKT 
Sbjct: 159 VESSDKNFSDVRGMDEILEEFEQAVDLLTNGDKY---AKIGAKVPRGILLNGPPGTGKTL 215

Query: 70  LAQVVARELGVNFRSTSG 87
           +A+ +A E GV F   SG
Sbjct: 216 IAKAIAGEAGVPFLYASG 233


>gi|289679612|ref|ZP_06500502.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae
          pv. syringae FF5]
          Length = 212

 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 6/68 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
          RPR+  E  GQ      LK  I A  +  + L H  LF G  G+GKTT+A+++A+ L   
Sbjct: 11 RPRSFREMVGQAHV---LKALINALDS--QRLHHAYLFTGTRGVGKTTIARIIAKCLNCE 65

Query: 82 FRSTSGPV 89
             TS P 
Sbjct: 66 TGITSTPC 73


>gi|253742391|gb|EES99226.1| Replication factor C, subunit 4 [Giardia intestinalis ATCC 50581]
          Length = 322

 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 56/123 (45%), Gaps = 19/123 (15%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE-LGVN 81
           RPRTL+   G  E    L+ F  AA+     L ++L  G PGLGKTT+A  +A + LG N
Sbjct: 11  RPRTLDGLIGNPEILRRLRYF--AAQGN---LPNILLTGGPGLGKTTIALCLANQMLGSN 65

Query: 82  ----FRSTSGPVIAKAGDLAALLTNLEDRDV---------LFIDEIHRLSIIVEEILYPA 128
               F   +        D+ A +     + V         +F+DE   ++   +++L   
Sbjct: 66  RSEAFLELNASDERNVSDIRAKVKTFAQKQVTLPAGIQKLVFLDECDAMTEAAQQVLRRI 125

Query: 129 MED 131
           M+D
Sbjct: 126 MDD 128


>gi|227546001|ref|ZP_03976050.1| ATP-dependent protease ATP-binding subunit [Bifidobacterium longum
           subsp. infantis ATCC 55813]
 gi|227213635|gb|EEI81484.1| ATP-dependent protease ATP-binding subunit [Bifidobacterium longum
           subsp. infantis ATCC 55813]
          Length = 472

 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---ED 105
           A  ++L +GP G+GKT LAQ +AR + V F  T    + +AG    D+  +L  L    D
Sbjct: 146 AKSNILLLGPTGVGKTYLAQALARVMNVPFVITDATTLTEAGYVGDDVETVLQRLLQAAD 205

Query: 106 RDV-------LFIDEIHRLS 118
            DV       ++IDEI +++
Sbjct: 206 GDVSRAQHGIIYIDEIDKIA 225


>gi|239621943|ref|ZP_04664974.1| ATP-dependent protease ATP-binding subunit [Bifidobacterium longum
           subsp. infantis CCUG 52486]
 gi|312132956|ref|YP_004000295.1| clpx [Bifidobacterium longum subsp. longum BBMN68]
 gi|317482287|ref|ZP_07941308.1| ATP-dependent Clp protease [Bifidobacterium sp. 12_1_47BFAA]
 gi|322688892|ref|YP_004208626.1| ATP-dependent Clp protease ATP-binding subunit [Bifidobacterium
           longum subsp. infantis 157F]
 gi|322690867|ref|YP_004220437.1| ATP-dependent Clp protease ATP-binding subunit [Bifidobacterium
           longum subsp. longum JCM 1217]
 gi|239515134|gb|EEQ55001.1| ATP-dependent protease ATP-binding subunit [Bifidobacterium longum
           subsp. infantis CCUG 52486]
 gi|291517063|emb|CBK70679.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Bifidobacterium longum subsp. longum F8]
 gi|311773938|gb|ADQ03426.1| ClpX [Bifidobacterium longum subsp. longum BBMN68]
 gi|316916303|gb|EFV37704.1| ATP-dependent Clp protease [Bifidobacterium sp. 12_1_47BFAA]
 gi|320455723|dbj|BAJ66345.1| ATP-dependent Clp protease ATP-binding subunit [Bifidobacterium
           longum subsp. longum JCM 1217]
 gi|320460228|dbj|BAJ70848.1| ATP-dependent Clp protease ATP-binding subunit [Bifidobacterium
           longum subsp. infantis 157F]
          Length = 472

 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---ED 105
           A  ++L +GP G+GKT LAQ +AR + V F  T    + +AG    D+  +L  L    D
Sbjct: 146 AKSNILLLGPTGVGKTYLAQALARVMNVPFVITDATTLTEAGYVGDDVETVLQRLLQAAD 205

Query: 106 RDV-------LFIDEIHRLS 118
            DV       ++IDEI +++
Sbjct: 206 GDVSRAQHGIIYIDEIDKIA 225


>gi|239815494|ref|YP_002944404.1| ATP-dependent protease ATP-binding subunit ClpX [Variovorax
           paradoxus S110]
 gi|259491272|sp|C5CJT5|CLPX_VARPS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|239802071|gb|ACS19138.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Variovorax
           paradoxus S110]
          Length = 421

 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+            
Sbjct: 117 NILLIGPTGSGKTLLAQTLARMLDVPFVMADATTLTEAGYVGEDVENIIQKLLQSCNYEV 176

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 177 ERAQRGIVYIDEIDKIS 193


>gi|163753151|ref|ZP_02160275.1| ATP-dependent protease ATP-binding subunit [Kordia algicida OT-1]
 gi|161326883|gb|EDP98208.1| ATP-dependent protease ATP-binding subunit [Kordia algicida OT-1]
          Length = 410

 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLT--------NL 103
           +++ VG  G GKT +A+ +AR L V        V+ +AG    D+ ++LT        NL
Sbjct: 109 NIIMVGQTGTGKTLMAKTIARMLNVPLAIVDATVLTEAGYVGEDVESILTRLLQAADYNL 168

Query: 104 E--DRDVLFIDEIHRLS 118
           E  +R ++FIDEI +++
Sbjct: 169 EKAERGIVFIDEIDKIA 185


>gi|134103754|ref|YP_001109415.1| ATP-dependent protease ATP-binding subunit ClpX [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291007720|ref|ZP_06565693.1| ATP-dependent protease ATP-binding subunit ClpX [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133916377|emb|CAM06490.1| putative Clp protease ATP-binding subunit [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 432

 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDV 108
           ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+        D DV
Sbjct: 121 NILLIGPTGCGKTHLAQTLARMLDVPFAIADATALTEAGYVGEDVENILLKLIQAADYDV 180

Query: 109 -------LFIDEIHRLS 118
                  L+IDE+ ++S
Sbjct: 181 ARAQTGILYIDEVDKVS 197


>gi|124514480|gb|EAY55993.1| ATP-dependent Clp protease, ATP-binding subunit [Leptospirillum
           rubarum]
          Length = 426

 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+            
Sbjct: 114 NILMIGPTGTGKTLLAQTLARILEVPFAIADATTLTEAGYVGEDVENIILKLLQAADYDV 173

Query: 104 --EDRDVLFIDEIHRLS 118
              +R +++IDEI ++S
Sbjct: 174 EKAERGIVYIDEIDKIS 190


>gi|145552042|ref|XP_001461697.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124429533|emb|CAK94324.1| unnamed protein product [Paramecium tetraurelia]
          Length = 384

 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+TL+E  G  +    L+     A A+   L +++ VGPPG+GKT+    +AR++
Sbjct: 12 RPKTLDEVHGNSDIVDKLR-----AIAKMGNLPNIILVGPPGIGKTSSVLCLARQI 62


>gi|32478841|gb|AAP83637.1| katanin [Gossypium hirsutum]
          Length = 520

 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLED------RDV 108
           VL  GPPG GKT LA+ VA E G  F + S   +A    G+   ++  L D         
Sbjct: 272 VLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPST 331

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 332 IFIDEIDSL 340


>gi|46581704|ref|YP_012512.1| ATP-dependent protease La, truncation [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46451127|gb|AAS97772.1| ATP-dependent protease La, truncation [Desulfovibrio vulgaris str.
           Hildenborough]
          Length = 702

 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 87/221 (39%), Gaps = 53/221 (23%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF------------------RSTSGPVIAKAGDLAA 98
           + FVGPPG+GKT++ Q +A+ +   F                  R+ +G +  +   + A
Sbjct: 268 LCFVGPPGVGKTSVGQAIAKAMNRPFVRLSLADLRDEAELRGHRRTYAGAMPGRI--MQA 325

Query: 99  LLTNLEDRDVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN 150
           L T      V  +DE+ ++        ++ + E+L P   D  LD  V        +  +
Sbjct: 326 LRTAGVRNPVFMLDEMDKMGQDARSDPAMALLELLDPEQNDRFLDRYV-------DLPFD 378

Query: 151 LSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL----KTIVQRGAKLTGLAVTDE 206
           LS    IA       +  PL DR  +     + E E      + ++ R  +  GL     
Sbjct: 379 LSEVMFIATANDTSRMRGPLLDRLEVVPFAGYSEDEKADIASRFLLPRQLREHGLV---- 434

Query: 207 AACEIAMRSRGTPRIAGRLLRR-VRDFAEVAHAKTITREIA 246
                       P +A   LRR VRD+ + A  + + RE+A
Sbjct: 435 ---------HPRPVVADEALRRIVRDYTDEAGVRGLERELA 466


>gi|61211644|sp|Q8G5R1|CLPX_BIFLO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
          Length = 472

 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---ED 105
           A  ++L +GP G+GKT LAQ +AR + V F  T    + +AG    D+  +L  L    D
Sbjct: 146 AKSNILLLGPTGVGKTYLAQALARVMNVPFVITDATTLTEAGYVGDDVETVLQRLLQAAD 205

Query: 106 RDV-------LFIDEIHRLS 118
            DV       ++IDEI +++
Sbjct: 206 GDVSRAQHGIIYIDEIDKIA 225


>gi|94310822|ref|YP_584032.1| ATP-dependent protease ATP-binding subunit ClpX [Cupriavidus
           metallidurans CH34]
 gi|166214808|sp|Q1LM63|CLPX_RALME RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|93354674|gb|ABF08763.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Cupriavidus metallidurans CH34]
          Length = 425

 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104
           ++L +GP G GKT LAQ +AR L V F       + +AG +          LL N     
Sbjct: 117 NILLIGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEV 176

Query: 105 ---DRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 177 EKAQRGIVYIDEIDKIS 193


>gi|332288868|ref|YP_004419720.1| ATP-dependent protease ATP-binding subunit ClpX [Gallibacterium
           anatis UMN179]
 gi|330431764|gb|AEC16823.1| ATP-dependent protease ATP-binding subunit ClpX [Gallibacterium
           anatis UMN179]
          Length = 415

 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAA--------LLTNLE--- 104
           ++L +GP G GKT LAQ +AR++ V F       + +AG +          LL N +   
Sbjct: 116 NILLIGPTGSGKTLLAQTLARQINVPFAIADATTLTEAGYVGEDVENIIQRLLQNCDYDT 175

Query: 105 ---DRDVLFIDEIHRLS 118
              ++ +++IDEI +++
Sbjct: 176 EKAEQGIIYIDEIDKIT 192


>gi|312282199|dbj|BAJ33965.1| unnamed protein product [Thellungiella halophila]
          Length = 697

 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL +GPPG GKT LA+ +A E GV F S SG
Sbjct: 265 VLLIGPPGTGKTLLAKAIAGEAGVPFFSISG 295


>gi|301060526|ref|ZP_07201366.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [delta
           proteobacterium NaphS2]
 gi|300445369|gb|EFK09294.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [delta
           proteobacterium NaphS2]
          Length = 415

 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 17/94 (18%)

Query: 39  NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG---- 94
           N KV +E  +       ++L +GP G GKT LAQ +AR L V F       + +AG    
Sbjct: 97  NTKVDMEGVEIEKS---NILLIGPTGSGKTLLAQTLARILKVPFTIADATTLTEAGYVGE 153

Query: 95  DLAALLTNL---EDRDV-------LFIDEIHRLS 118
           D+  ++ NL    D DV       ++IDEI +++
Sbjct: 154 DVENIILNLVQMADYDVESACKGIVYIDEIDKIA 187


>gi|301117286|ref|XP_002906371.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262107720|gb|EEY65772.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 2023

 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 18/33 (54%), Positives = 23/33 (69%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPV 89
           +  VGPPG GKT LAQV+AR LG+ + S  G +
Sbjct: 315 IAVVGPPGSGKTRLAQVLARRLGLKYLSLDGAI 347


>gi|260592723|ref|ZP_05858181.1| putative methanol dehydrogenase regulatory protein [Prevotella
           veroralis F0319]
 gi|260535254|gb|EEX17871.1| putative methanol dehydrogenase regulatory protein [Prevotella
           veroralis F0319]
          Length = 340

 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 79/176 (44%), Gaps = 24/176 (13%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKAGDLAALLTNLEDRDVLF---- 110
           HVL  G PG+ KT LA++V+R +   F R    P +  +  L   + N++  +  F    
Sbjct: 64  HVLIEGVPGVAKTLLARLVSRLIDARFSRIQFTPDLMPSDVLGTTVFNMKTSEFDFHQGP 123

Query: 111 -------IDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
                  +DEI+R     +  L+  ME+ Q+ +   +G S R   +    +T+IA    V
Sbjct: 124 VFAEMVLVDEINRAPAKTQAALFEVMEERQVTI---DGVSHRMNDL----YTIIATQNPV 176

Query: 164 GL-----LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMR 214
                  L     DRF   IR+++  +E+  +I+Q   +   L   D+    +++R
Sbjct: 177 EQEGTYRLPEAQLDRFLFKIRMSYPTLEEEVSILQHHQENRKLVKLDDIQPLLSVR 232


>gi|226469390|emb|CAX70174.1| 26S proteasome regulatory subunit T4 [Schistosoma japonicum]
          Length = 395

 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRS--TSGPVIAKAGDLAALLTNLED--RD----V 108
            L  GPPG GKT LA+ VA +L VNF    +SG V    G+ A L+  +    RD    +
Sbjct: 176 CLLYGPPGTGKTLLARAVASQLDVNFLKVVSSGIVDKYIGESARLIREMFSYARDHQPCI 235

Query: 109 LFIDEI 114
           +F+DEI
Sbjct: 236 IFMDEI 241


>gi|254585551|ref|XP_002498343.1| ZYRO0G08008p [Zygosaccharomyces rouxii]
 gi|238941237|emb|CAR29410.1| ZYRO0G08008p [Zygosaccharomyces rouxii]
          Length = 826

 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 553 VLLWGPPGCGKTLLAKAVANESRANFISIKGP 584



 Score = 39.7 bits (91), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL  GPPG GKT++A  +A EL V F S S P +    +G+    + +L D        +
Sbjct: 229 VLLHGPPGCGKTSIANALAGELQVPFLSISAPSVVSGMSGESEKKIRDLFDEARSLAPCL 288

Query: 109 LFIDEIHRLS 118
           +F DEI  ++
Sbjct: 289 MFFDEIDAIT 298


>gi|296126216|ref|YP_003633468.1| DNA polymerase III, subunits gamma and tau [Brachyspira murdochii
           DSM 12563]
 gi|296018032|gb|ADG71269.1| DNA polymerase III, subunits gamma and tau [Brachyspira murdochii
           DSM 12563]
          Length = 520

 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 103/255 (40%), Gaps = 49/255 (19%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T EE  GQ      +   I A K  A A    LF G  G+GKT+LA+++A+ L    
Sbjct: 13  RPQTFEEVIGQEHITKTISKSI-AQKKIAHAY---LFSGAHGVGKTSLARIIAKALNC-- 66

Query: 83  RSTSGPVIAKAGDLAALLTNLED---RDVLFID--------------EIHRLS------- 118
              +GP     G +    T +E+    DV+ ID              E  R+S       
Sbjct: 67  --VNGPTDKPCG-VCPSCTQIENGTPLDVIEIDGASNRGIENIRSIIENVRISPVAGKYK 123

Query: 119 -IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             I++E+     E F   L   E P A  V         I ATT    +   ++ R    
Sbjct: 124 VYIIDEVHQITNEAFNALLKTLEEPPAHVV--------FILATTEADRVLPTIRSRCQ-- 173

Query: 178 IRLNFYE--IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
            +  F    IEDL+ I++       +   +EA   IA ++RG+ R +  +L ++   A  
Sbjct: 174 -QYTFKSLGIEDLEKILKGILDKENIKYDEEAIFLIAKQARGSVRDSETILEKM--IAYT 230

Query: 236 AHAKTITREIADAAL 250
              K IT    +A +
Sbjct: 231 TDKKYITSADVNAVV 245


>gi|222424645|dbj|BAH20277.1| AT2G30950 [Arabidopsis thaliana]
          Length = 695

 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL +GPPG GKT LA+ +A E GV F S SG
Sbjct: 263 VLLIGPPGTGKTLLAKAIAGEAGVPFFSISG 293


>gi|194595679|gb|ACF77122.1| ATP-dependent Clp protease ATP-binding subunit [Azospirillum
           brasilense]
          Length = 422

 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L VGP G GKT LAQ +AR + V F       + +AG +   + N+         
Sbjct: 110 AKSNILLVGPTGCGKTLLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 169

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDE+ ++S
Sbjct: 170 YNVERAQRGIVYIDEVDKIS 189


>gi|189501688|ref|YP_001957405.1| hypothetical protein Aasi_0232 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497129|gb|ACE05676.1| hypothetical protein Aasi_0232 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 691

 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 8/65 (12%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DVL 109
           L +GPPG GKT LA+ VA E GV F S SG       V   A  +  L    +++   ++
Sbjct: 229 LLIGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGAARVRDLFKQAKEKAPAII 288

Query: 110 FIDEI 114
           FIDEI
Sbjct: 289 FIDEI 293


>gi|152993533|ref|YP_001359254.1| cell division protein FtsH [Sulfurovum sp. NBC37-1]
 gi|310946765|sp|A6QBN8|FTSH_SULNB RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|151425394|dbj|BAF72897.1| cell division protein FtsH [Sulfurovum sp. NBC37-1]
          Length = 671

 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 34/67 (50%), Gaps = 10/67 (14%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI---------AKAGDLAALLTNLEDRD 107
           VL VGPPG GKT LA+ VA E  V F S SG            ++  DL A     E   
Sbjct: 220 VLLVGPPGTGKTLLAKAVAGEASVPFFSVSGSGFIEMFVGVGASRVRDLFAQAKK-EAPS 278

Query: 108 VLFIDEI 114
           ++FIDEI
Sbjct: 279 IIFIDEI 285


>gi|126178633|ref|YP_001046598.1| ATPase [Methanoculleus marisnigri JR1]
 gi|125861427|gb|ABN56616.1| ATPase associated with various cellular activities, AAA_3
           [Methanoculleus marisnigri JR1]
          Length = 325

 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 12/90 (13%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAAL-LTNLEDR-------- 106
           HVL  G PG  KTT+ ++VA+ +G +F    G V  +  D+  + + + E +        
Sbjct: 48  HVLVEGLPGTAKTTIGKIVAKLMGYDFSRVQGAVDVQPADIIGIRIYDPEQKAFILRKGP 107

Query: 107 ---DVLFIDEIHRLSIIVEEILYPAMEDFQ 133
              + + IDEI+RL+   +     AM + Q
Sbjct: 108 IFHNFIMIDEINRLTPKTQSAFLEAMSERQ 137


>gi|73541075|ref|YP_295595.1| ATP-dependent protease ATP-binding subunit [Ralstonia eutropha
           JMP134]
 gi|123760219|sp|Q472D2|CLPX_RALEJ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|72118488|gb|AAZ60751.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Ralstonia
           eutropha JMP134]
          Length = 425

 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104
           ++L +GP G GKT LAQ +AR L V F       + +AG +          LL N     
Sbjct: 117 NILLIGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEV 176

Query: 105 ---DRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 177 EKAQRGIVYIDEIDKIS 193


>gi|15220118|ref|NP_178151.1| ERH3 (ECTOPIC ROOT HAIR 3); ATP binding /
           nucleoside-triphosphatase/ nucleotide binding
           [Arabidopsis thaliana]
 gi|60390221|sp|Q9SEX2|KTNA1_ARATH RecName: Full=Katanin p60 ATPase-containing subunit; Short=Katanin
           p60 subunit; AltName: Full=CAD ATPase; AltName:
           Full=Katanin-1; Short=Atp60; AltName: Full=Protein
           BOTERO 1; AltName: Full=Protein ECTOPIC ROOT HAIR 3;
           AltName: Full=Protein FAT ROOT; AltName: Full=Protein
           FRAGILE FIBER 2; Short=AtAAA1; AltName: Full=p60 katanin
 gi|6648606|gb|AAF21247.1|AF048706_1 CAD ATPase [Arabidopsis thaliana]
 gi|12324979|gb|AAG52435.1|AC018848_6 CAD ATPase (AAA1); 35570-33019 [Arabidopsis thaliana]
 gi|13958985|gb|AAK51051.1|AF358779_1 katanin [Arabidopsis thaliana]
 gi|14133602|gb|AAK54074.1|AF359248_1 katanin 1 [Arabidopsis thaliana]
 gi|16649099|gb|AAL24401.1| CAD ATPase (AAA1) [Arabidopsis thaliana]
 gi|23197882|gb|AAN15468.1| CAD ATPase (AAA1) [Arabidopsis thaliana]
 gi|110736965|dbj|BAF00438.1| CAD ATPase [Arabidopsis thaliana]
 gi|332198269|gb|AEE36390.1| Katanin p60 ATPase-containing subunit [Arabidopsis thaliana]
          Length = 523

 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLED------RDV 108
           VL  GPPG GKT LA+ VA E G  F + S   +A    G+   ++  L D         
Sbjct: 275 VLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPST 334

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 335 IFIDEIDSL 343


>gi|58259205|ref|XP_567015.1| helicase [Cryptococcus neoformans var. neoformans JEC21]
 gi|134107345|ref|XP_777557.1| hypothetical protein CNBA6790 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50260251|gb|EAL22910.1| hypothetical protein CNBA6790 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57223152|gb|AAW41196.1| helicase, putative [Cryptococcus neoformans var. neoformans JEC21]
          Length = 756

 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 20/37 (54%), Positives = 22/37 (59%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +A   VL  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 439 DAPSGVLLWGPPGCGKTLLAKAVANESRANFISVKGP 475


>gi|325300152|ref|YP_004260069.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacteroides
           salanitronis DSM 18170]
 gi|324319705|gb|ADY37596.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacteroides
           salanitronis DSM 18170]
          Length = 414

 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 62/127 (48%), Gaps = 29/127 (22%)

Query: 21  LLRPRTLEEF-----TGQVEACSNLKVFIEAAKAR---AEALD-------HVLFVGPPGL 65
           L +P+ ++EF      GQ  A   L V +     R    E+ D       +++ VG  G 
Sbjct: 64  LPKPKDIKEFLDQYVIGQDSAKRYLSVAVYNHYKRLLQPESKDDVEIEKSNIIMVGSTGT 123

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLT--------NLE--DRDVLFI 111
           GKT LA+ +A+ L V F      V+ +AG    D+ ++LT        N+E  +R ++FI
Sbjct: 124 GKTLLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVADYNVEEAERGIVFI 183

Query: 112 DEIHRLS 118
           DEI +++
Sbjct: 184 DEIDKIA 190


>gi|320105914|ref|YP_004181504.1| ATP-dependent metalloprotease FtsH [Terriglobus saanensis SP1PR4]
 gi|319924435|gb|ADV81510.1| ATP-dependent metalloprotease FtsH [Terriglobus saanensis SP1PR4]
          Length = 639

 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 34/69 (49%), Gaps = 7/69 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEAL-------DHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  EA   LK  IE  +  A+           VL VGPPG GKT LA+ VA E 
Sbjct: 154 TFKDVAGVDEAKEELKEIIEFLRESAKFQRLGGRIPKGVLLVGPPGTGKTLLARAVAGEA 213

Query: 79  GVNFRSTSG 87
            V F S SG
Sbjct: 214 NVPFFSISG 222


>gi|315058448|gb|ADT72777.1| Cell division protein FtsH [Campylobacter jejuni subsp. jejuni S3]
          Length = 538

 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG+GKT +A+ VA E GV F   SG
Sbjct: 188 VLMVGPPGVGKTLIAKAVAGEAGVPFFYQSG 218


>gi|302347883|ref|YP_003815521.1| MoxR-like ATPase [Acidilobus saccharovorans 345-15]
 gi|302328295|gb|ADL18490.1| MoxR-like ATPase [Acidilobus saccharovorans 345-15]
          Length = 307

 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 16/28 (57%), Positives = 23/28 (82%)

Query: 56 HVLFVGPPGLGKTTLAQVVARELGVNFR 83
          HVL  GPPG+GKTTLA+++A+ +G  F+
Sbjct: 40 HVLLEGPPGVGKTTLAKLLAQAMGGQFK 67


>gi|296329571|ref|ZP_06872057.1| cell-division protein and general stress protein (class III
           heat-shock) [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305672768|ref|YP_003864439.1| cell division protein and general stress protein [Bacillus subtilis
           subsp. spizizenii str. W23]
 gi|296153314|gb|EFG94177.1| cell-division protein and general stress protein (class III
           heat-shock) [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305411011|gb|ADM36129.1| cell-division protein and general stress protein (class III
           heat-shock) [Bacillus subtilis subsp. spizizenii str.
           W23]
          Length = 637

 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+  A E GV F S SG       V   A  +  L  N +     +
Sbjct: 197 VLLVGPPGTGKTLLAKACAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCL 256

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 257 IFIDEI 262


>gi|296270439|ref|YP_003653071.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Thermobispora
           bispora DSM 43833]
 gi|296093226|gb|ADG89178.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermobispora
           bispora DSM 43833]
          Length = 427

 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 31/130 (23%)

Query: 20  SLLRPRTLEEF-----TGQVEACSNLKVFI--------EAAKARAEALD----HVLFVGP 62
           +L +PR + EF      GQ +A   L V +           +AR + L+    ++L +GP
Sbjct: 60  NLPKPREIYEFLDSYVVGQDKAKKALSVAVYNHYKRIQSGNRARDDGLELAKSNILLLGP 119

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---EDRDV------- 108
            G GKT LAQ +A+ L V F       + +AG    D+  +L  L    D DV       
Sbjct: 120 TGSGKTLLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKKAETGI 179

Query: 109 LFIDEIHRLS 118
           ++IDE+ +++
Sbjct: 180 IYIDEVDKIA 189


>gi|257899973|ref|ZP_05679626.1| peptidase M41 [Enterococcus faecium Com15]
 gi|293571078|ref|ZP_06682119.1| Cell division protease FtsH [Enterococcus faecium E980]
 gi|257837885|gb|EEV62959.1| peptidase M41 [Enterococcus faecium Com15]
 gi|291608861|gb|EFF38142.1| Cell division protease FtsH [Enterococcus faecium E980]
          Length = 703

 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 224 VLLEGPPGTGKTLLAKAVAGEAGVPFYSISG 254


>gi|212697413|ref|ZP_03305541.1| hypothetical protein ANHYDRO_01983 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675605|gb|EEB35212.1| hypothetical protein ANHYDRO_01983 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 677

 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E  V F S SG    +      A  +  L    +++   +
Sbjct: 209 VLLVGPPGTGKTLLAKAVAGEANVPFFSISGSEFVEMFVGMGASKVRDLFKQAKEKAPCI 268

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 269 VFIDEI 274


>gi|190406014|gb|EDV09281.1| ribosome biogenesis ATPase RIX7 [Saccharomyces cerevisiae RM11-1a]
 gi|259147956|emb|CAY81205.1| Rix7p [Saccharomyces cerevisiae EC1118]
 gi|323303931|gb|EGA57711.1| Rix7p [Saccharomyces cerevisiae FostersB]
          Length = 837

 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 570 VLLWGPPGCGKTLLAKAVANESRANFISIKGP 601



 Score = 38.5 bits (88), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL  GPPG GKT++A  +A EL V F S S P +    +G+    + +L D        +
Sbjct: 242 VLLHGPPGCGKTSIANALAGELQVPFISISAPSVVSGMSGESEKKIRDLFDEARSLAPCL 301

Query: 109 LFIDEIHRLS 118
           +F DEI  ++
Sbjct: 302 VFFDEIDAIT 311


>gi|218441183|ref|YP_002379512.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7424]
 gi|218173911|gb|ACK72644.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7424]
          Length = 667

 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 20/30 (66%), Positives = 21/30 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTS 86
           VL VGPPG GKT LA+ VA E GV F S S
Sbjct: 239 VLLVGPPGTGKTLLAKAVAGEAGVTFFSIS 268


>gi|170098422|ref|XP_001880430.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164644868|gb|EDR09117.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 1040

 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  G PG GKT LA  VA+E G+NF S  GP I
Sbjct: 728 LLLYGFPGCGKTLLASAVAKECGLNFISVKGPEI 761


>gi|151941136|gb|EDN59514.1| ribosome export [Saccharomyces cerevisiae YJM789]
          Length = 837

 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 570 VLLWGPPGCGKTLLAKAVANESRANFISIKGP 601



 Score = 38.5 bits (88), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL  GPPG GKT++A  +A EL V F S S P +    +G+    + +L D        +
Sbjct: 242 VLLHGPPGCGKTSIANALAGELQVPFISISAPSVVSGMSGESEKKIRDLFDEARSLAPCL 301

Query: 109 LFIDEIHRLS 118
           +F DEI  ++
Sbjct: 302 VFFDEIDAIT 311


>gi|159037462|ref|YP_001536715.1| shikimate kinase [Salinispora arenicola CNS-205]
 gi|229541092|sp|A8LY07|AROK_SALAI RecName: Full=Shikimate kinase; Short=SK
 gi|157916297|gb|ABV97724.1| Shikimate kinase [Salinispora arenicola CNS-205]
          Length = 167

 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 21/38 (55%), Positives = 24/38 (63%)

Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG 94
           + VGPPG GKTT+ Q +A  LGV FR T   V A AG
Sbjct: 5  CVLVGPPGSGKTTVGQALAELLGVEFRDTDLDVEATAG 42


>gi|297612760|ref|NP_001066296.2| Os12g0176500 [Oryza sativa Japonica Group]
 gi|10798806|dbj|BAB16441.1| replication factor C 37 kDa subunit [Oryza sativa Japonica Group]
 gi|77553810|gb|ABA96606.1| Activator 1 37 kDa subunit, putative, expressed [Oryza sativa
          Japonica Group]
 gi|125535960|gb|EAY82448.1| hypothetical protein OsI_37665 [Oryza sativa Indica Group]
 gi|125578677|gb|EAZ19823.1| hypothetical protein OsJ_35406 [Oryza sativa Japonica Group]
 gi|215737297|dbj|BAG96226.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255670097|dbj|BAF29315.2| Os12g0176500 [Oryza sativa Japonica Group]
          Length = 339

 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RPR +++   Q E    L   ++ A      L H+LF GPPG GKTT A  +A +L
Sbjct: 16 RPRQVKDVAHQEEVVRVLTTTLQTAD-----LPHMLFYGPPGTGKTTTALAIAYQL 66


>gi|16077137|ref|NP_387950.1| cell-division protein and general stress protein [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|221307879|ref|ZP_03589726.1| cell-division protein and general stress protein (class III
           heat-shock) [Bacillus subtilis subsp. subtilis str. 168]
 gi|221312201|ref|ZP_03594006.1| cell-division protein and general stress protein (class III
           heat-shock) [Bacillus subtilis subsp. subtilis str. NCIB
           3610]
 gi|221317134|ref|ZP_03598428.1| cell-division protein and general stress protein (class III
           heat-shock) [Bacillus subtilis subsp. subtilis str.
           JH642]
 gi|221321397|ref|ZP_03602691.1| cell-division protein and general stress protein (class III
           heat-shock) [Bacillus subtilis subsp. subtilis str. SMY]
 gi|321313739|ref|YP_004206026.1| cell-division protein and general stress protein (class III
           heat-shock) [Bacillus subtilis BSn5]
 gi|585159|sp|P37476|FTSH_BACSU RecName: Full=ATP-dependent zinc metalloprotease FtsH; AltName:
           Full=Cell division protease FtsH
 gi|467458|dbj|BAA05304.1| cell division protein [Bacillus subtilis]
 gi|2632336|emb|CAB11845.1| cell-division protein and general stress protein (class III
           heat-shock) [Bacillus subtilis subsp. subtilis str. 168]
 gi|291482441|dbj|BAI83516.1| cell division protease FtsH [Bacillus subtilis subsp. natto
           BEST195]
 gi|320020013|gb|ADV94999.1| cell-division protein and general stress protein (class III
           heat-shock) [Bacillus subtilis BSn5]
          Length = 637

 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+  A E GV F S SG       V   A  +  L  N +     +
Sbjct: 197 VLLVGPPGTGKTLLAKACAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCL 256

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 257 IFIDEI 262


>gi|86150472|ref|ZP_01068697.1| cell division protein FtsH, putative [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|88596784|ref|ZP_01100021.1| cell division protein FtsH, putative [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|218562621|ref|YP_002344400.1| putative membrane bound ATPase [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|85839067|gb|EAQ56331.1| cell division protein FtsH, putative [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|88191625|gb|EAQ95597.1| cell division protein FtsH, putative [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|112360327|emb|CAL35123.1| putative membrane bound ATPase [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|315928364|gb|EFV07679.1| metalloprotease [Campylobacter jejuni subsp. jejuni DFVF1099]
          Length = 538

 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG+GKT +A+ VA E GV F   SG
Sbjct: 188 VLMVGPPGVGKTLIAKAVAGEAGVPFFYQSG 218


>gi|332298399|ref|YP_004440321.1| ATP-dependent metalloprotease FtsH [Treponema brennaborense DSM
           12168]
 gi|332181502|gb|AEE17190.1| ATP-dependent metalloprotease FtsH [Treponema brennaborense DSM
           12168]
          Length = 616

 Score = 40.0 bits (92), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 41/95 (43%), Gaps = 17/95 (17%)

Query: 10  RNVSQEDADISLLRPR----------TLEEFTGQVEACSNLKVFIEAAKARAEALDH--- 56
           +N SQ    +   R R          T  +  GQ EA + L   I+  K   + LD    
Sbjct: 140 QNASQSAKGMQFGRSRARVYSGGKKITFADVAGQEEAKNELSDVIDFLKNPQKYLDMGAK 199

Query: 57  ----VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
               +L VG PG GKT LA+ VA E GV F   SG
Sbjct: 200 IPTGILLVGNPGTGKTLLARAVAGEAGVAFLHISG 234


>gi|330897699|gb|EGH29118.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae
          pv. japonica str. M301072PT]
          Length = 232

 Score = 40.0 bits (92), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 6/68 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
          RPR+  E  GQ      LK  I A  +  + L H  LF G  G+GKTT+A+++A+ L   
Sbjct: 11 RPRSFREMVGQAHV---LKALINALDS--QRLHHAYLFTGTRGVGKTTIARIIAKCLNCE 65

Query: 82 FRSTSGPV 89
             TS P 
Sbjct: 66 TGITSTPC 73


>gi|307942385|ref|ZP_07657736.1| AAA ATPase, central region [Roseibium sp. TrichSKD4]
 gi|307774671|gb|EFO33881.1| AAA ATPase, central region [Roseibium sp. TrichSKD4]
          Length = 369

 Score = 40.0 bits (92), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 24/47 (51%), Positives = 27/47 (57%), Gaps = 3/47 (6%)

Query: 34  VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           V    NL   +EA     E    VLF GPPG+GKT  A+ VARELGV
Sbjct: 106 VNERQNLGALLEAG---LEPTRTVLFTGPPGVGKTLGARWVARELGV 149


>gi|304313998|ref|YP_003849145.1| cell division protein 48 [Methanothermobacter marburgensis str.
           Marburg]
 gi|302587457|gb|ADL57832.1| predicted cell division protein 48 [Methanothermobacter
           marburgensis str. Marburg]
          Length = 729

 Score = 40.0 bits (92), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 8/73 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
           T E+  G  E    ++  IE    R E  +         VL  GPPG GKT LA+ VA E
Sbjct: 200 TYEDIGGLKEEVKKVREMIEIPLKRPELFERLGITPPKGVLMHGPPGTGKTLLAKAVANE 259

Query: 78  LGVNFRSTSGPVI 90
              +F + +GP I
Sbjct: 260 SDAHFIAINGPEI 272


>gi|296417934|ref|XP_002838602.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295634552|emb|CAZ82793.1| unnamed protein product [Tuber melanosporum]
          Length = 747

 Score = 40.0 bits (92), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL--EDRD----V 108
           VL  GPPG GKT LA  VA E+G+ F + S P I    +G+    L  L  E R+    +
Sbjct: 219 VLLHGPPGCGKTMLANAVAGEIGLPFIAISAPSIVSGMSGESEKKLRELFEEAREKAPCL 278

Query: 109 LFIDEIHRLS 118
           +F+DEI  ++
Sbjct: 279 IFMDEIDAIT 288



 Score = 39.3 bits (90), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 500 VLLWGPPGCGKTLLAKAVANESRANFISIRGP 531


>gi|258593674|emb|CBE70015.1| DNA polymerase III, subunits gamma and tau [NC10 bacterium 'Dutch
          sediment']
          Length = 601

 Score = 40.0 bits (92), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 36/68 (52%), Gaps = 6/68 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKAR-AEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
          RP+  +E  GQ      LK  I  AK R A AL   LF GP G+GKTT A+++A+ L   
Sbjct: 11 RPQNFDEVVGQRPVTQTLKNAI--AKDRVAHAL---LFAGPRGVGKTTTARILAKALNCE 65

Query: 82 FRSTSGPV 89
             TS P 
Sbjct: 66 RGRTSEPC 73


>gi|295699009|ref|YP_003606902.1| ATPase AAA [Burkholderia sp. CCGE1002]
 gi|295438222|gb|ADG17391.1| AAA ATPase central domain protein [Burkholderia sp. CCGE1002]
          Length = 632

 Score = 40.0 bits (92), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 18/35 (51%), Positives = 23/35 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA 91
           +L VG PG+GKT LAQ +A E G NF S +G   +
Sbjct: 224 ILMVGAPGVGKTRLAQALAGECGANFISITGSYFS 258


>gi|302419019|ref|XP_003007340.1| cell division protease ftsH [Verticillium albo-atrum VaMs.102]
 gi|261352991|gb|EEY15419.1| cell division protease ftsH [Verticillium albo-atrum VaMs.102]
          Length = 718

 Score = 40.0 bits (92), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           +L VGPPG GKT LA+ VA E GV F   SG       V   A  +  L T+ + +   +
Sbjct: 279 ILLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEVYVGVGAKRVRDLFTSAKSKSPAI 338

Query: 109 LFIDEI 114
           +FIDE+
Sbjct: 339 IFIDEL 344


>gi|256271958|gb|EEU06977.1| Rix7p [Saccharomyces cerevisiae JAY291]
          Length = 837

 Score = 40.0 bits (92), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 570 VLLWGPPGCGKTLLAKAVANESRANFISIKGP 601



 Score = 38.5 bits (88), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL  GPPG GKT++A  +A EL V F S S P +    +G+    + +L D        +
Sbjct: 242 VLLHGPPGCGKTSIANALAGELQVPFISISAPSVVSGMSGESEKKIRDLFDEARSLAPCL 301

Query: 109 LFIDEIHRLS 118
           +F DEI  ++
Sbjct: 302 VFFDEIDAIT 311


>gi|227552663|ref|ZP_03982712.1| M41 family endopeptidase FtsH [Enterococcus faecium TX1330]
 gi|257888631|ref|ZP_05668284.1| peptidase M41 [Enterococcus faecium 1,141,733]
 gi|257897414|ref|ZP_05677067.1| peptidase M41 [Enterococcus faecium Com12]
 gi|293378828|ref|ZP_06624983.1| ATP-dependent metallopeptidase HflB [Enterococcus faecium PC4.1]
 gi|227178192|gb|EEI59164.1| M41 family endopeptidase FtsH [Enterococcus faecium TX1330]
 gi|257824685|gb|EEV51617.1| peptidase M41 [Enterococcus faecium 1,141,733]
 gi|257833979|gb|EEV60400.1| peptidase M41 [Enterococcus faecium Com12]
 gi|292642369|gb|EFF60524.1| ATP-dependent metallopeptidase HflB [Enterococcus faecium PC4.1]
          Length = 703

 Score = 40.0 bits (92), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 224 VLLEGPPGTGKTLLAKAVAGEAGVPFYSISG 254


>gi|224178038|ref|YP_002600953.1| cell division protein [Pyramimonas parkeae]
 gi|215882705|gb|ACJ71078.1| cell division protein [Pyramimonas parkeae]
          Length = 561

 Score = 40.0 bits (92), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRST--SGPVIAKAGDLAALLTNLEDR------DV 108
            LFVGPPG GKT LAQ +A   GV   +T  S  +  + G     L +L ++       +
Sbjct: 71  FLFVGPPGTGKTLLAQAIAGTAGVTLYATVASEFIDGQKGIGCCRLRDLFEKAKKDSPSI 130

Query: 109 LFIDEIHRLS 118
           +FIDEI  L+
Sbjct: 131 IFIDEIDTLA 140


>gi|222445802|ref|ZP_03608317.1| hypothetical protein METSMIALI_01445 [Methanobrevibacter smithii
           DSM 2375]
 gi|222435367|gb|EEE42532.1| hypothetical protein METSMIALI_01445 [Methanobrevibacter smithii
           DSM 2375]
          Length = 740

 Score = 40.0 bits (92), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 52/124 (41%), Gaps = 24/124 (19%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
           + E+  G  +    ++  IE    R E  D         VL  GPPG GKT LA+ VA E
Sbjct: 211 SYEDIGGLKDEVKKVREMIEIPLKRPELFDKLGIAPPKGVLMHGPPGTGKTLLAKAVASE 270

Query: 78  LGVNFRSTSGPVIAK---AGDLAALLTNLEDRD-----VLFIDEIHRLSIIVEEILYPAM 129
              +F + +GP I      G    L    E+ +     ++FIDE+  ++        P  
Sbjct: 271 SDAHFIAINGPEIMSKYVGGSEENLREYFEEAEENAPSIIFIDELDAIA--------PKR 322

Query: 130 EDFQ 133
           ED Q
Sbjct: 323 EDTQ 326


>gi|167630672|ref|YP_001681171.1| cell division cycle protein 48 [Heliobacterium modesticaldum Ice1]
 gi|167593412|gb|ABZ85160.1| cell division cycle protein 48 [Heliobacterium modesticaldum Ice1]
          Length = 580

 Score = 40.0 bits (92), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LAQ VA E+   F +  GP
Sbjct: 345 VLLYGPPGCGKTLLAQAVANEVEATFFAVKGP 376


>gi|146420643|ref|XP_001486276.1| hypothetical protein PGUG_01947 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 768

 Score = 40.0 bits (92), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL  GPPG  KT  A+ +A ELG+NF +  GP I
Sbjct: 542 VLLYGPPGCSKTLTAKALATELGLNFLAVKGPEI 575


>gi|113867497|ref|YP_725986.1| ATP-dependent protease ATP-binding subunit ClpX [Ralstonia eutropha
           H16]
 gi|123033070|sp|Q0KBK3|CLPX_RALEH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|113526273|emb|CAJ92618.1| ATP-dependent Clp protease ATP-binding subunit (ClpX) [Ralstonia
           eutropha H16]
          Length = 425

 Score = 40.0 bits (92), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104
           ++L +GP G GKT LAQ +AR L V F       + +AG +          LL N     
Sbjct: 117 NILLIGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEV 176

Query: 105 ---DRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 177 EKAQRGIVYIDEIDKIS 193


>gi|86152943|ref|ZP_01071148.1| atpase ec atp-dependent zn proteases [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|121612530|ref|YP_001000684.1| cell division protein FtsH, putative [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|167005606|ref|ZP_02271364.1| putative membrane bound ATPase [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|85843828|gb|EAQ61038.1| atpase ec atp-dependent zn proteases [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|87249291|gb|EAQ72252.1| cell division protein FtsH, putative [Campylobacter jejuni subsp.
           jejuni 81-176]
          Length = 538

 Score = 40.0 bits (92), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG+GKT +A+ VA E GV F   SG
Sbjct: 188 VLMVGPPGVGKTLIAKAVAGEAGVPFFYQSG 218


>gi|325185486|emb|CCA19969.1| ribosome biogenesis ATPase RIX7 putative [Albugo laibachii Nc14]
          Length = 770

 Score = 40.0 bits (92), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ +A E   NF S  GP
Sbjct: 507 VLLYGPPGCGKTLLAKAIANESEANFISIKGP 538



 Score = 37.7 bits (86), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 32/77 (41%), Gaps = 9/77 (11%)

Query: 23  RPRT-LEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQV 73
           RPRT   +F G       +K  IE      E   H        +L  GPPG GKT LA  
Sbjct: 153 RPRTRYSDFGGIHSILQEVKELIEYPLTHPEVYVHLGVEPPRGILLHGPPGTGKTMLANS 212

Query: 74  VARELGVNFRSTSGPVI 90
           +A E G  F   S P I
Sbjct: 213 IAGESGAAFIRISAPEI 229


>gi|311063897|ref|YP_003970622.1| AAA family ATPase [Bifidobacterium bifidum PRL2010]
 gi|310866216|gb|ADP35585.1| AAA family ATPase [Bifidobacterium bifidum PRL2010]
          Length = 402

 Score = 40.0 bits (92), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 51/118 (43%), Gaps = 20/118 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIE-----AAKARA---EALDHVLFVGPPGLGKT 68
           AD SL    T   F G     +  K  IE     +A+ RA   + +  V+F G PG GKT
Sbjct: 146 ADSSL----TFAAFGGYERVIARAKELIETQLGNSAQMRAIGAKPIKGVIFTGAPGTGKT 201

Query: 69  TLAQVVARELGVNFRSTSGPVIAK--AGDLAALL------TNLEDRDVLFIDEIHRLS 118
            LA+++A      F   SGP I     GD    L         + R ++F DEI  ++
Sbjct: 202 HLARIIANVADAQFYLVSGPTIVSKYVGDSEETLRMIFAAAQSDKRAIIFFDEIDSIA 259


>gi|297297857|ref|XP_001099493.2| PREDICTED: 26S protease regulatory subunit S10B-like, partial
           [Macaca mulatta]
          Length = 352

 Score = 40.0 bits (92), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 56/124 (45%), Gaps = 23/124 (18%)

Query: 8   LSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV--------L 58
           L  N+S ED  ++S        E  G  E    L+  IE      E    V        L
Sbjct: 132 LVYNMSHEDPGNVSY------SEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCL 185

Query: 59  FVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA-GDLAALLTNLED--RD----VLF 110
             GPPG GKT LA+ VA +L  NF +  S  ++ K  G+ A L+  + +  RD    ++F
Sbjct: 186 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIF 245

Query: 111 IDEI 114
           +DEI
Sbjct: 246 MDEI 249


>gi|269101027|ref|YP_003289175.1| Probable chloroplast ATP-dependent protease [Ectocarpus
           siliculosus]
 gi|310943129|sp|D1J722|FTSH_ECTSI RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|266631535|emb|CAV31206.1| Probable chloroplast ATP-dependent protease [Ectocarpus
           siliculosus]
 gi|270118665|emb|CAT18723.1| Probable chloroplast ATP-dependent protease [Ectocarpus
           siliculosus]
          Length = 661

 Score = 40.0 bits (92), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 49/116 (42%), Gaps = 19/116 (16%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAK-------ARAEALDHVLFVGPPGLG 66
           Q DAD  +L      +  G  EA    + F+   K         A     V+ VGPPG G
Sbjct: 185 QLDADTGVL----FSDVAGIDEAKQEFEEFVSFLKMPQLFTAVGANPPKGVIIVGPPGTG 240

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--VLFIDEI 114
           KT LA+ +A E GV F S SG    +      A  +  L    E     +LFIDEI
Sbjct: 241 KTLLAKAIAGEAGVPFISISGSEFVEMFVGIGASRVRDLFETAERNSPCILFIDEI 296


>gi|300780435|ref|ZP_07090291.1| cell division protein FtsH [Corynebacterium genitalium ATCC 33030]
 gi|300534545|gb|EFK55604.1| cell division protein FtsH [Corynebacterium genitalium ATCC 33030]
          Length = 865

 Score = 40.0 bits (92), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 202 VLLYGPPGTGKTLLARAVAGEAGVPFYSISG 232


>gi|255714923|ref|XP_002553743.1| KLTH0E06006p [Lachancea thermotolerans]
 gi|238935125|emb|CAR23306.1| KLTH0E06006p [Lachancea thermotolerans]
          Length = 819

 Score = 40.0 bits (92), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 559 VLLWGPPGCGKTLLAKAVANESRANFISIKGP 590



 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL  GPPG GKT++A  +A EL V F S S P +
Sbjct: 239 VLLHGPPGCGKTSIANALAGELQVPFISISAPSV 272


>gi|296005011|ref|XP_001349382.2| ATPase, putative [Plasmodium falciparum 3D7]
 gi|225632241|emb|CAD51231.2| ATPase, putative [Plasmodium falciparum 3D7]
          Length = 1200

 Score = 40.0 bits (92), Expect = 0.44,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT LA+ ++ E+  NF +  GP I
Sbjct: 713 ILLYGPPGCGKTMLAKAISNEMKANFIAIKGPEI 746


>gi|224536929|ref|ZP_03677468.1| hypothetical protein BACCELL_01805 [Bacteroides cellulosilyticus DSM
            14838]
 gi|224521456|gb|EEF90561.1| hypothetical protein BACCELL_01805 [Bacteroides cellulosilyticus DSM
            14838]
          Length = 1113

 Score = 40.0 bits (92), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 84/217 (38%), Gaps = 46/217 (21%)

Query: 43   FIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVA------------RELGVNF 82
            +I+  +A+AEA+        DH LFVG PG GKTT+A+++             R L V  
Sbjct: 874  YIKVERAKAEAMGKKFQGVVDHYLFVGNPGTGKTTVARIMGNIFYSLGVLPSNRLLEVTR 933

Query: 83   RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL-----SIIVEEILYPAMEDFQLDLM 137
            +      + +     A +       V FIDE + L            + P + D++  ++
Sbjct: 934  KDLVEGYVGQTATKTARVVKRAVGGVFFIDEAYSLMGDNFGQEATNTILPMLLDYKGKMV 993

Query: 138  VGEGPSARSVKINLSRFTLIAATTRVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQRGA 196
                   R +              R  + TN  L+ RF   I    Y  ++L  I +   
Sbjct: 994  CIAAGYPREI--------------RQWIDTNSGLESRFTKVIHFEDYNPDELAQIFRMKV 1039

Query: 197  KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
            K   L +T EA  E AMR   T        RR R+FA
Sbjct: 1040 KKDKLTLTPEA--ENAMRVYFTDLYN----RRERNFA 1070



 Score = 40.0 bits (92), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 108/273 (39%), Gaps = 65/273 (23%)

Query: 27  LEEFTGQVEACSNLKVFI---------EAAKARAEALDHVLFVGPPGLGKTTLAQVVA-- 75
           L+EF G  E  + ++  I         + A A+ E  DH LF+G PG GKTT+A++ A  
Sbjct: 296 LDEFVGIDEIKATVQKIINKIDFERERKGAGAKREVKDHFLFLGNPGTGKTTIARIFADI 355

Query: 76  -----------------RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
                            +EL   +   +   + K  D+A          VLFIDE + L 
Sbjct: 356 LNSLEVLPIGQLVEVSRKELVAGYVGQTALAVEKYVDMAM-------GGVLFIDEAYTLK 408

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA--TTRVG--LLTNP-LQDR 173
               +       D  L L          V+    +F  IAA  T  +G  L +N  +  R
Sbjct: 409 QGDNDQFGQEAIDTLLKL----------VEDRRGQFVAIAAGYTKEMGEFLSSNSGMASR 458

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
           F   +    Y+ ++L  I +R  K   L + +EA  E  +R+      +   L R R+F 
Sbjct: 459 FNETVTFRDYKADELTEIFRRQVKKEHLTLDEEA--EAFIRN----YFSKMYLTRTRNFG 512

Query: 234 EVAHAKTITREIADAALLRLAIDKMGFDQLDLR 266
                    RE+ +A  +  AI   G   L+L+
Sbjct: 513 NA-------REVRNA--MDRAIKNQGVRLLELK 536


>gi|255569991|ref|XP_002525958.1| Cell division protease ftsH, putative [Ricinus communis]
 gi|223534690|gb|EEF36382.1| Cell division protease ftsH, putative [Ricinus communis]
          Length = 636

 Score = 40.0 bits (92), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 44/89 (49%), Gaps = 8/89 (8%)

Query: 34  VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK- 92
           +E  S ++  I   K  A+    VL VGPPG GKT LA+ VA E GV F S S     + 
Sbjct: 361 MEIVSCMQGAINYQKLGAKIPRGVLLVGPPGTGKTLLARAVAGEAGVPFFSVSASEFVEL 420

Query: 93  -AGDLAALLTNL------EDRDVLFIDEI 114
             G  AA + +L          ++FIDE+
Sbjct: 421 FVGRGAARIRDLFKVARKSAPSIIFIDEL 449


>gi|224123964|ref|XP_002330253.1| predicted protein [Populus trichocarpa]
 gi|222871709|gb|EEF08840.1| predicted protein [Populus trichocarpa]
          Length = 950

 Score = 40.0 bits (92), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 81/191 (42%), Gaps = 34/191 (17%)

Query: 13  SQEDADISLLRPRTL--EEFTGQVEACSNLKVFIEAAKARAEALDHVLFV-GPPGLGKTT 69
           S  D +  +LR + +  E+  G  +    +  FI   K R  +   ++ + GPPG+GKT+
Sbjct: 428 SYSDENFDVLRAQKILDEDHYGLADVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTS 487

Query: 70  LAQVVARELGVN-FRSTSGP--------------VIAKAGDLAALLTNLEDRD-VLFIDE 113
           + + +AR L    FR + G               + A  G +   L N+   + ++ IDE
Sbjct: 488 IGRSIARSLNRKFFRFSVGGLSDVAEIKGHRRTYIGAMPGKMVQCLKNVGTANPLVLIDE 547

Query: 114 IHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
           I +L        +  + E+L P      LD  +        V I+LS+   +     V +
Sbjct: 548 IDKLGRGHAGDPASALLELLDPEQNANFLDHYL-------DVPIDLSKVLFVCTANVVDM 600

Query: 166 LTNPLQDRFGI 176
           + NPL DR  +
Sbjct: 601 IPNPLLDRMEV 611


>gi|171186450|ref|YP_001795369.1| replication factor C large subunit [Thermoproteus neutrophilus
          V24Sta]
 gi|226739140|sp|B1YC69|RFCL_THENV RecName: Full=Replication factor C large subunit; Short=RFC large
          subunit; AltName: Full=Clamp loader large subunit
 gi|170935662|gb|ACB40923.1| AAA ATPase central domain protein [Thermoproteus neutrophilus
          V24Sta]
          Length = 422

 Score = 40.0 bits (92), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 37/75 (49%), Gaps = 4/75 (5%)

Query: 4  REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
          R    S  V+QE+A  +LL       F    E C+      E   A A+A   VL  GPP
Sbjct: 10 RPKAFSEIVNQEEAK-TLLASWICARFRAPKEFCARWAKKREKEVAEAKA---VLLAGPP 65

Query: 64 GLGKTTLAQVVAREL 78
          G+GKTT+   +ARE+
Sbjct: 66 GIGKTTVVHALAREI 80


>gi|147920445|ref|YP_685764.1| cell division cycle protein 48 [uncultured methanogenic archaeon
           RC-I]
 gi|110621160|emb|CAJ36438.1| cell division cycle protein 48 [uncultured methanogenic archaeon
           RC-I]
          Length = 758

 Score = 40.0 bits (92), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 8/73 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
           T E+  G  +A   ++  IE      E  +         VL +GPPG GKT LA+ VA E
Sbjct: 208 TYEDLGGIRDAIQKIREMIELPLKYPELFNRLGIDPPKGVLILGPPGTGKTLLAKAVANE 267

Query: 78  LGVNFRSTSGPVI 90
               F S +GP I
Sbjct: 268 SDAYFTSINGPEI 280



 Score = 37.7 bits (86), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 24/45 (53%), Gaps = 6/45 (13%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDL 96
           EA   VL  GPPG GKT LA+ +A E   NF      + AK  DL
Sbjct: 515 EAPKGVLLYGPPGTGKTLLAKAIANESQANF------ITAKGSDL 553


>gi|49246399|gb|AAT58331.1| FtsH-like protein [Aegilops tauschii]
 gi|49246407|gb|AAT58335.1| FtsH-like protein [Hordeum vulgare subsp. spontaneum]
 gi|49246421|gb|AAT58342.1| FtsH-like protein [Hordeum vulgare subsp. spontaneum]
 gi|49246457|gb|AAT58360.1| FtsH-like protein [Triticum urartu]
          Length = 151

 Score = 40.0 bits (92), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
          VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 56 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 86


>gi|86143111|ref|ZP_01061533.1| putative DNA polymerase III [Leeuwenhoekiella blandensis MED217]
 gi|85830556|gb|EAQ49015.1| putative DNA polymerase III [Leeuwenhoekiella blandensis MED217]
          Length = 391

 Score = 40.0 bits (92), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 96/220 (43%), Gaps = 21/220 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP T ++  GQ +A +N    +E A A       +LF GP G+GKTT A+++A+++    
Sbjct: 40  RPATFKDVVGQ-QAITNT---LENAIANNHLAQALLFTGPRGVGKTTCARILAKKIN--- 92

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI-LYPAMEDFQLDLMVGEG 141
              +  V+ +  D A  +  L+      +D+I  L   ++++ + P + ++++  ++ E 
Sbjct: 93  -QEADEVVDENEDYAFNIFELDAASNNSVDDIRNL---IDQVRIAPQVGNYKV-YIIDEV 147

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG------ 195
               S   N    TL         +    +    +P  L+  +I D K I  +       
Sbjct: 148 HMLSSAAFNAFLKTLEEPPKHAIFILATTEKHKILPTILSRCQIFDFKRITVKDIREHLV 207

Query: 196 --AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
             AK  G+   +EA   IA ++ G  R A     RV  F+
Sbjct: 208 DIAKQEGITADEEALHIIAQKADGALRDALSTFDRVVSFS 247


>gi|226943511|ref|YP_002798584.1| ATP-dependent protease La [Azotobacter vinelandii DJ]
 gi|226718438|gb|ACO77609.1| ATP-dependent protease La [Azotobacter vinelandii DJ]
          Length = 800

 Score = 40.0 bits (92), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 74/166 (44%), Gaps = 40/166 (24%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           VL VGPPG+GKT++ + +A  LG  F R + G +  +A              G L   L 
Sbjct: 377 VLLVGPPGVGKTSIGKSIAESLGRPFYRFSVGGMRDEAEIKGHRRTYIGALPGKLVQALK 436

Query: 102 NLEDRD-VLFIDEIHRL--------SIIVEEILYP----AMEDFQLDLMVGEGPSARSVK 148
           ++E  + V+ +DEI +L        +  + E L P    A  D  LDL           +
Sbjct: 437 DVEVMNPVIMLDEIDKLGASHHGDPASALLETLDPEQNAAFLDHYLDL-----------R 485

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           ++LS+   +     +  +  PL DR  + IRL+ Y  E+   I +R
Sbjct: 486 LDLSKVLFVCTANTLDSIPGPLLDRMEV-IRLSGYIAEEKFAIAKR 530


>gi|332020666|gb|EGI61072.1| Katanin p60 ATPase-containing subunit A-like 2 [Acromyrmex
           echinatior]
          Length = 496

 Score = 40.0 bits (92), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRS-TSGPVIAKA-GD---LAALLTNLEDR---DV 108
           VL  GPPG GKT LA+ VA +    F + TS  VI+K  GD      +LT+L       +
Sbjct: 254 VLLYGPPGTGKTMLAKAVATKCQSTFFNITSSSVISKWRGDSEKYIRVLTDLAKHYAPTI 313

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 314 IFIDEI 319


>gi|332188786|ref|ZP_08390497.1| AAA ATPase, CDC48 subfamily protein [Sphingomonas sp. S17]
 gi|332011185|gb|EGI53279.1| AAA ATPase, CDC48 subfamily protein [Sphingomonas sp. S17]
          Length = 763

 Score = 40.0 bits (92), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 38/68 (55%), Gaps = 8/68 (11%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRST-SGPVIAK-AGDLAALLTNLEDR------DVL 109
           L  GPPG GKT LA+ VARE   NF +T S  +++K  G+    +T L  R       V+
Sbjct: 514 LLYGPPGTGKTLLAKAVAREAEANFIATKSSDLLSKWYGESEQQITRLFQRARQVAPTVI 573

Query: 110 FIDEIHRL 117
           FIDE+  L
Sbjct: 574 FIDELDSL 581


>gi|298708269|emb|CBJ48332.1| similar to CTF18, chromosome transmission fidelity factor 18
           homolog isoform 3 [Ectocarpus siliculosus]
          Length = 1130

 Score = 40.0 bits (92), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 1/68 (1%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHR 116
           ++  GPPGLGKTTLAQVVA+  G      +      A  L   +T   + + L  D+   
Sbjct: 402 IMLCGPPGLGKTTLAQVVAKHAGYRVYEINASDDRTASVLRQRMTEAMEGNTLLADKRPN 461

Query: 117 LSIIVEEI 124
           L I+++E+
Sbjct: 462 L-IVLDEV 468


>gi|291521148|emb|CBK79441.1| ATP-dependent metalloprotease FtsH [Coprococcus catus GD/7]
          Length = 604

 Score = 40.0 bits (92), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--V 108
           +L VGPPG GKT LA+ VA E  V F S SG    +      A  +  L    +++   +
Sbjct: 202 ILLVGPPGTGKTMLAKAVAGESNVPFFSMSGSEFVEMFVGMGASKVRDLFKQAKEKAPCI 261

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 262 VFIDEI 267


>gi|289641546|ref|ZP_06473708.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Frankia
           symbiont of Datisca glomerata]
 gi|289508641|gb|EFD29578.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Frankia
           symbiont of Datisca glomerata]
          Length = 430

 Score = 40.0 bits (92), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 57/131 (43%), Gaps = 33/131 (25%)

Query: 21  LLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAE--------------ALDHVLFVG 61
           L +PR + EF      GQ +A   L V +     R +              A  ++L +G
Sbjct: 61  LPKPREIYEFLDSYVVGQEQAKKILSVAVYNHYKRVQAGGAGGDAKGDVELAKSNILLLG 120

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---EDRDV------ 108
           P G GKT LAQ +AR L V F       + +AG    D+  +L  L    D DV      
Sbjct: 121 PTGCGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKKAETG 180

Query: 109 -LFIDEIHRLS 118
            ++IDE+ +++
Sbjct: 181 IIYIDEVDKIA 191


>gi|288555053|ref|YP_003426988.1| PAS modulated sigma54 specific transcriptional regulator, Fis
           family protein [Bacillus pseudofirmus OF4]
 gi|288546213|gb|ADC50096.1| PAS modulated sigma54 specific transcriptional regulator, Fis
           family protein [Bacillus pseudofirmus OF4]
          Length = 455

 Score = 40.0 bits (92), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 76/168 (45%), Gaps = 33/168 (19%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +I +LR + ++  TG V     +K  +  AK  AE   +VL +G  G+GKT LA+++ RE
Sbjct: 135 EIEVLRNQQMKN-TGFVGNSYEMKKCLSVAKQVAEVDVNVLILGESGVGKTHLAKLIHRE 193

Query: 78  LG--------VN---------------FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEI 114
            G        VN               + + S     K G L   L  L +   LF+DEI
Sbjct: 194 SGRCNKPFIEVNCGAIPESLFESEFFGYEAGSFTSANKKGKLG--LAELAEGGTLFLDEI 251

Query: 115 HRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTR 162
             LS+ ++  +   +++ Q   + G  P  R+V      F LIAAT +
Sbjct: 252 GELSLPLQVKVLRFIQEKQFYRVGGTKP--RTVD-----FRLIAATNQ 292


>gi|302916499|ref|XP_003052060.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256732999|gb|EEU46347.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 389

 Score = 40.0 bits (92), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           RP TLE+ +G  +  + +  F++  +     L H+L  GPPG GKT+    +AR +
Sbjct: 50  RPNTLEDVSGHHDILATINKFVDTNR-----LPHLLLYGPPGTGKTSTILALARRI 100


>gi|296808249|ref|XP_002844463.1| DNA helicase [Arthroderma otae CBS 113480]
 gi|238843946|gb|EEQ33608.1| DNA helicase [Arthroderma otae CBS 113480]
          Length = 458

 Score = 40.0 bits (92), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 28/50 (56%)

Query: 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
          F GQV A     V ++  K+R  A   VL  G PG GKT LA  V++ELG
Sbjct: 40 FVGQVPAREACGVIVDLIKSRKMAGRAVLLAGGPGTGKTALALAVSQELG 89


>gi|227903174|ref|ZP_04020979.1| M41 family endopeptidase FtsH [Lactobacillus acidophilus ATCC 4796]
 gi|227868979|gb|EEJ76400.1| M41 family endopeptidase FtsH [Lactobacillus acidophilus ATCC 4796]
          Length = 718

 Score = 40.0 bits (92), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108
           VL  GPPG GKT LA+ VA E  V F S SG       V   A  +  L +N +     +
Sbjct: 229 VLLEGPPGTGKTLLARAVAGEANVPFYSISGSDFVEMFVGVGASRVRDLFSNAKKNAPSI 288

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 289 IFIDEI 294


>gi|227547907|ref|ZP_03977956.1| cell division protein FtsH [Corynebacterium lipophiloflavum DSM
           44291]
 gi|227080012|gb|EEI17975.1| cell division protein FtsH [Corynebacterium lipophiloflavum DSM
           44291]
          Length = 805

 Score = 40.0 bits (92), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 202 VLLYGPPGTGKTLLARAVAGEAGVPFYSISG 232


>gi|227824800|ref|ZP_03989632.1| ATP-dependent metalloprotease ftsH [Acidaminococcus sp. D21]
 gi|226905299|gb|EEH91217.1| ATP-dependent metalloprotease ftsH [Acidaminococcus sp. D21]
          Length = 625

 Score = 40.0 bits (92), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 51/105 (48%), Gaps = 15/105 (14%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAK--ARAEAL-----DHVLFVGPPGLGKTTLAQVVARE 77
           +T ++  GQ EA   L+  +      +R +A+       VL VGPPG GKT LA+ VA E
Sbjct: 164 KTFKDVAGQDEAKEALQEIVSFLHDPSRYQAIGATMPKGVLLVGPPGTGKTLLAKAVAGE 223

Query: 78  LGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEI 114
             V F S SG       V   A  +  L    +++   ++FIDEI
Sbjct: 224 AKVPFFSISGSEFIEMFVGMGAARVRDLFKQAQEKAPCIVFIDEI 268


>gi|224031823|gb|ACN34987.1| unknown [Zea mays]
          Length = 391

 Score = 40.0 bits (92), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 63/137 (45%), Gaps = 19/137 (13%)

Query: 57  VLFVGPPGLGKTTLAQVVARELG---VNFRSTS--GPVIAKAGDLAALLTNLEDR---DV 108
           VL  GPPG GKT LA+ +ARE G   +N R ++        A  L A + +L  +    +
Sbjct: 123 VLLYGPPGTGKTMLAKAIARESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAHKLQPAI 182

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLM-VGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           +FIDE+           + AM + + + M + +G +        +R  ++AAT R   L 
Sbjct: 183 IFIDEVDSFLGQRRTTDHEAMTNMKTEFMSLWDGFTTDQN----ARVMVLAATNRPSELD 238

Query: 168 NPLQDRF------GIPI 178
             +  RF      GIP+
Sbjct: 239 EAILRRFTQIFEIGIPV 255


>gi|254441332|ref|ZP_05054825.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Octadecabacter
           antarcticus 307]
 gi|198251410|gb|EDY75725.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Octadecabacter
           antarcticus 307]
          Length = 773

 Score = 40.0 bits (92), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 43/80 (53%), Gaps = 20/80 (25%)

Query: 58  LFVGPPGLGKTTLAQVVAREL----------GVNFRSTS-GPVIAKA---GD----LAAL 99
           L VG PG+GKT +A+ +AR++          G    S   G ++A     GD    L A+
Sbjct: 221 LLVGDPGVGKTAIAEGLARKIIESKVPEVLAGTTIYSLDMGALLAGTRYRGDFEERLKAV 280

Query: 100 LTNLEDRD--VLFIDEIHRL 117
           +T LED D  VLFIDEIH +
Sbjct: 281 MTELEDHDDAVLFIDEIHTI 300



 Score = 40.0 bits (92), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 76/163 (46%), Gaps = 23/163 (14%)

Query: 10  RNVSQEDADISLLRPRTLEEFT-GQVEACSNLKVFIEAAKAR----AEALDHVLFVGPPG 64
           +NVS++DA++      +L+    GQ +A   L   I+ A+A      + + + LF GP G
Sbjct: 449 KNVSKDDAEVLKDLESSLKRVVFGQDDAIVALSSAIKLARAGLREPEKPIGNYLFAGPTG 508

Query: 65  LGKTTLAQVVARELGVNF-----------RSTSGPVIAKAG----DLAALLTNLEDRD-- 107
           +GKT +A+ +A  LGV              S S  + A  G    D   +LT+  D++  
Sbjct: 509 VGKTEVAKQLADTLGVELLRFDMSEYMEKHSISRLIGAPPGYVGFDQGGMLTDGVDQNPH 568

Query: 108 -VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKI 149
            VL +DE+ +    V  IL   M++ +L    G     R+V I
Sbjct: 569 CVLLLDEMEKAHPDVYNILLQVMDNGKLTDHNGRTTDFRNVII 611


>gi|194289505|ref|YP_002005412.1| ATP-dependent protease ATP-binding subunit clpx [Cupriavidus
           taiwanensis LMG 19424]
 gi|238692761|sp|B3R4W2|CLPX_CUPTR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|193223340|emb|CAQ69345.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Cupriavidus taiwanensis LMG 19424]
          Length = 425

 Score = 40.0 bits (92), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104
           ++L +GP G GKT LAQ +AR L V F       + +AG +          LL N     
Sbjct: 117 NILLIGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEV 176

Query: 105 ---DRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 177 EKAQRGIVYIDEIDKIS 193


>gi|184200756|ref|YP_001854963.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Kocuria
           rhizophila DC2201]
 gi|238689204|sp|B2GGB7|CLPX_KOCRD RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|183580986|dbj|BAG29457.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Kocuria
           rhizophila DC2201]
          Length = 431

 Score = 40.0 bits (92), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 20/89 (22%)

Query: 44  IEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAAL 99
           IE AK+      ++L VGP G GKT LAQ +A++L V F       + +AG    D+  +
Sbjct: 117 IEVAKS------NILLVGPTGSGKTYLAQSLAKKLDVPFAVADATSLTEAGYVGEDVENI 170

Query: 100 LTNL----------EDRDVLFIDEIHRLS 118
           L  L           ++ +++IDEI ++S
Sbjct: 171 LLKLIQAADFDLKKAEQGIIYIDEIDKIS 199


>gi|167766201|ref|ZP_02438254.1| hypothetical protein CLOSS21_00695 [Clostridium sp. SS2/1]
 gi|167712281|gb|EDS22860.1| hypothetical protein CLOSS21_00695 [Clostridium sp. SS2/1]
          Length = 679

 Score = 40.0 bits (92), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 20/30 (66%), Positives = 21/30 (70%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           L VGPPG GKT LA+ VA E GV F S SG
Sbjct: 211 LLVGPPGTGKTLLAKAVAGEAGVPFFSLSG 240


>gi|56755741|gb|AAW26049.1| SJCHGC06030 protein [Schistosoma japonicum]
 gi|226469386|emb|CAX70172.1| 26S proteasome regulatory subunit T4 [Schistosoma japonicum]
 gi|226469388|emb|CAX70173.1| 26S proteasome regulatory subunit T4 [Schistosoma japonicum]
          Length = 395

 Score = 40.0 bits (92), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRS--TSGPVIAKAGDLAALLTNLED--RD----V 108
            L  GPPG GKT LA+ VA +L VNF    +SG V    G+ A L+  +    RD    +
Sbjct: 176 CLLYGPPGTGKTLLARAVASQLDVNFLKVVSSGIVDKYIGESARLIREMFSYARDHQPCI 235

Query: 109 LFIDEI 114
           +F+DEI
Sbjct: 236 IFMDEI 241


>gi|63079330|gb|AAY29673.1| predicted ATP-dependent specificity component of the Clp protease
           [Bifidobacterium breve UCC2003]
          Length = 453

 Score = 40.0 bits (92), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---ED 105
           A  ++L +GP G+GKT LAQ +AR + V F  T    + +AG    D+  +L  L    D
Sbjct: 139 AKSNILLLGPTGVGKTYLAQSLARVMNVPFVITDATTLTEAGYVGDDVETVLQRLLQAAD 198

Query: 106 RDV-------LFIDEIHRLS 118
            DV       ++IDEI +++
Sbjct: 199 GDVSRAQHGIIYIDEIDKIA 218


>gi|30684767|ref|NP_850156.1| VAR2 (VARIEGATED 2); ATP-dependent peptidase/ ATPase/
           metallopeptidase/ zinc ion binding [Arabidopsis
           thaliana]
 gi|75318709|sp|O80860|FTSH2_ARATH RecName: Full=ATP-dependent zinc metalloprotease FTSH 2,
           chloroplastic; Short=AtFTSH2; AltName: Full=Protein
           VARIEGATED 2; Flags: Precursor
 gi|7650138|gb|AAF65925.1|AF135189_1 zinc dependent protease [Arabidopsis thaliana]
 gi|3201633|gb|AAC20729.1| FtsH protease (VAR2) [Arabidopsis thaliana]
 gi|330253372|gb|AEC08466.1| cell division protease ftsH-2 [Arabidopsis thaliana]
          Length = 695

 Score = 40.0 bits (92), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL +GPPG GKT LA+ +A E GV F S SG
Sbjct: 263 VLLIGPPGTGKTLLAKAIAGEAGVPFFSISG 293


>gi|21672968|ref|NP_661033.1| cell division protein FtsH [Chlorobium tepidum TLS]
 gi|21646027|gb|AAM71375.1| cell division protein FtsH [Chlorobium tepidum TLS]
          Length = 706

 Score = 40.0 bits (92), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E  V F S SG       V   A  +  L  + +++   +
Sbjct: 233 VLLVGPPGTGKTLLAKAVAGEANVPFFSISGSDFVEMFVGVGAARVRDLFKSAKEKAPCI 292

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 293 IFIDEI 298


>gi|12654321|gb|AAH00981.1| Spermatogenesis associated 5-like 1 [Homo sapiens]
          Length = 753

 Score = 40.0 bits (92), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL  GPPG+GKT L Q VARE G    + S P +
Sbjct: 237 VLLAGPPGVGKTQLVQAVAREAGAELLAVSAPAL 270


>gi|6322994|ref|NP_013066.1| Rix7p [Saccharomyces cerevisiae S288c]
 gi|2492526|sp|Q07844|RIX7_YEAST RecName: Full=Ribosome biogenesis ATPase RIX7
 gi|1360222|emb|CAA97483.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|285813391|tpg|DAA09287.1| TPA: Rix7p [Saccharomyces cerevisiae S288c]
          Length = 837

 Score = 40.0 bits (92), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 570 VLLWGPPGCGKTLLAKAVANESRANFISIKGP 601



 Score = 38.5 bits (88), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL  GPPG GKT++A  +A EL V F S S P +    +G+    + +L D        +
Sbjct: 242 VLLHGPPGCGKTSIANALAGELQVPFISISAPSVVSGMSGESEKKIRDLFDEARSLAPCL 301

Query: 109 LFIDEIHRLS 118
           +F DEI  ++
Sbjct: 302 VFFDEIDAIT 311


>gi|148263973|ref|YP_001230679.1| ATP-dependent protease ATP-binding subunit ClpX [Geobacter
           uraniireducens Rf4]
 gi|189044135|sp|A5GFA1|CLPX_GEOUR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|146397473|gb|ABQ26106.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Geobacter
           uraniireducens Rf4]
          Length = 417

 Score = 40.0 bits (92), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 56/118 (47%), Gaps = 25/118 (21%)

Query: 26  TLEEFT-GQVEACSNLKVFIEAAKARAEAL----------DHVLFVGPPGLGKTTLAQVV 74
            L+E+  GQ +A   L V +     R EA+           ++L +GP G GKT LAQ +
Sbjct: 72  VLDEYVIGQNQAKKVLAVAVYNHYKRIEAMAKPGEVEMQKSNILLLGPTGSGKTLLAQTL 131

Query: 75  ARELGVNFRSTSGPVIAKAG----DLAALLTNL---EDRDV-------LFIDEIHRLS 118
           AR L V F       + +AG    D+  ++ NL    D DV       ++IDEI +++
Sbjct: 132 ARILKVPFAMADATNLTEAGYVGEDVENIILNLLQAADYDVERAQKGIIYIDEIDKIA 189


>gi|87121307|ref|ZP_01077197.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Marinomonas
           sp. MED121]
 gi|86163464|gb|EAQ64739.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Marinomonas
           sp. MED121]
          Length = 425

 Score = 40.0 bits (92), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+            
Sbjct: 118 NILLIGPTGSGKTLLAQTLARVLDVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDV 177

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 178 DKAQRGIVYIDEIDKIS 194


>gi|70995044|ref|XP_752288.1| AAA family ATPase/60S ribosome export protein Rix7 [Aspergillus
           fumigatus Af293]
 gi|66849923|gb|EAL90250.1| AAA family ATPase/60S ribosome export protein Rix7, putative
           [Aspergillus fumigatus Af293]
 gi|159131044|gb|EDP56157.1| AAA family ATPase/60S ribosome export protein Rix7, putative
           [Aspergillus fumigatus A1163]
          Length = 784

 Score = 40.0 bits (92), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 561 VLLWGPPGCGKTLLAKAVANESRANFISVKGP 592



 Score = 40.0 bits (92), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 49/104 (47%), Gaps = 21/104 (20%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDL-AALLTNLEDRD-----V 108
           VL  GPPG GKT +A   A ELGV F   S P I    +G+   AL  + E+       +
Sbjct: 257 VLLHGPPGCGKTMIANAFAAELGVPFIPISAPSIVSGMSGESEKALREHFEEAKRLAPCL 316

Query: 109 LFIDEIHRLSI------------IVEEILYPAMEDFQLDLMVGE 140
           +FIDEI  ++             IV ++L   M+D  LD   G+
Sbjct: 317 IFIDEIDAITPKRESAQREMEKRIVAQLLT-CMDDLALDKTDGK 359


>gi|69245450|ref|ZP_00603445.1| Peptidase M41, FtsH [Enterococcus faecium DO]
 gi|257879861|ref|ZP_05659514.1| peptidase M41 [Enterococcus faecium 1,230,933]
 gi|257882587|ref|ZP_05662240.1| peptidase M41 [Enterococcus faecium 1,231,502]
 gi|257886015|ref|ZP_05665668.1| peptidase M41 [Enterococcus faecium 1,231,501]
 gi|257891702|ref|ZP_05671355.1| peptidase M41 [Enterococcus faecium 1,231,410]
 gi|257894177|ref|ZP_05673830.1| peptidase M41 [Enterococcus faecium 1,231,408]
 gi|258614290|ref|ZP_05712060.1| cell division protein FtsH [Enterococcus faecium DO]
 gi|260559533|ref|ZP_05831714.1| peptidase M41 [Enterococcus faecium C68]
 gi|261206684|ref|ZP_05921382.1| peptidase M41 [Enterococcus faecium TC 6]
 gi|289565046|ref|ZP_06445500.1| peptidase M41 [Enterococcus faecium D344SRF]
 gi|293553699|ref|ZP_06674323.1| putative cell division protease FtsH [Enterococcus faecium E1039]
 gi|293563200|ref|ZP_06677656.1| putative cell division protease FtsH [Enterococcus faecium E1162]
 gi|293570122|ref|ZP_06681202.1| putative cell division protease FtsH [Enterococcus faecium E1071]
 gi|294614893|ref|ZP_06694784.1| putative cell division protease FtsH [Enterococcus faecium E1636]
 gi|294618635|ref|ZP_06698174.1| putative cell division protease FtsH [Enterococcus faecium E1679]
 gi|294623711|ref|ZP_06702544.1| putative cell division protease FtsH [Enterococcus faecium U0317]
 gi|314938208|ref|ZP_07845508.1| ATP-dependent metallopeptidase HflB [Enterococcus faecium
           TX0133a04]
 gi|314943103|ref|ZP_07849902.1| ATP-dependent metallopeptidase HflB [Enterococcus faecium TX0133C]
 gi|314949300|ref|ZP_07852643.1| ATP-dependent metallopeptidase HflB [Enterococcus faecium TX0082]
 gi|314952233|ref|ZP_07855248.1| ATP-dependent metallopeptidase HflB [Enterococcus faecium TX0133A]
 gi|314992091|ref|ZP_07857541.1| ATP-dependent metallopeptidase HflB [Enterococcus faecium TX0133B]
 gi|314996274|ref|ZP_07861330.1| ATP-dependent metallopeptidase HflB [Enterococcus faecium
           TX0133a01]
 gi|68195832|gb|EAN10268.1| Peptidase M41, FtsH [Enterococcus faecium DO]
 gi|257814089|gb|EEV42847.1| peptidase M41 [Enterococcus faecium 1,230,933]
 gi|257818245|gb|EEV45573.1| peptidase M41 [Enterococcus faecium 1,231,502]
 gi|257821871|gb|EEV49001.1| peptidase M41 [Enterococcus faecium 1,231,501]
 gi|257828062|gb|EEV54688.1| peptidase M41 [Enterococcus faecium 1,231,410]
 gi|257830556|gb|EEV57163.1| peptidase M41 [Enterococcus faecium 1,231,408]
 gi|260074632|gb|EEW62953.1| peptidase M41 [Enterococcus faecium C68]
 gi|260079177|gb|EEW66870.1| peptidase M41 [Enterococcus faecium TC 6]
 gi|289163253|gb|EFD11099.1| peptidase M41 [Enterococcus faecium D344SRF]
 gi|291587494|gb|EFF19378.1| putative cell division protease FtsH [Enterococcus faecium E1071]
 gi|291592179|gb|EFF23797.1| putative cell division protease FtsH [Enterococcus faecium E1636]
 gi|291595154|gb|EFF26492.1| putative cell division protease FtsH [Enterococcus faecium E1679]
 gi|291596926|gb|EFF28144.1| putative cell division protease FtsH [Enterococcus faecium U0317]
 gi|291602274|gb|EFF32502.1| putative cell division protease FtsH [Enterococcus faecium E1039]
 gi|291604850|gb|EFF34328.1| putative cell division protease FtsH [Enterococcus faecium E1162]
 gi|313589518|gb|EFR68363.1| ATP-dependent metallopeptidase HflB [Enterococcus faecium
           TX0133a01]
 gi|313593305|gb|EFR72150.1| ATP-dependent metallopeptidase HflB [Enterococcus faecium TX0133B]
 gi|313595628|gb|EFR74473.1| ATP-dependent metallopeptidase HflB [Enterococcus faecium TX0133A]
 gi|313598162|gb|EFR77007.1| ATP-dependent metallopeptidase HflB [Enterococcus faecium TX0133C]
 gi|313642404|gb|EFS06984.1| ATP-dependent metallopeptidase HflB [Enterococcus faecium
           TX0133a04]
 gi|313644306|gb|EFS08886.1| ATP-dependent metallopeptidase HflB [Enterococcus faecium TX0082]
          Length = 703

 Score = 40.0 bits (92), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 224 VLLEGPPGTGKTLLAKAVAGEAGVPFYSISG 254


>gi|326406698|gb|ADZ63769.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lactococcus
           lactis subsp. lactis CV56]
          Length = 411

 Score = 40.0 bits (92), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +A+ L V F       + +AG    D+  +L  L        
Sbjct: 111 NILLIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLLQASDFNI 170

Query: 104 --EDRDVLFIDEIHRLS 118
              +R +++IDEI +++
Sbjct: 171 ERAERGIIYIDEIDKIA 187


>gi|312215534|emb|CBX95486.1| hypothetical protein [Leptosphaeria maculans]
          Length = 434

 Score = 40.0 bits (92), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 5/60 (8%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          +   RP+TL E T Q      L   ++++      L H+LF GPPG GKT+    +A++L
Sbjct: 36 VEKYRPKTLSEVTAQDNTIQILSRTLQSSN-----LPHMLFYGPPGTGKTSTILALAKQL 90


>gi|302308716|ref|NP_985735.2| AFR188Wp [Ashbya gossypii ATCC 10895]
 gi|299790761|gb|AAS53559.2| AFR188Wp [Ashbya gossypii ATCC 10895]
          Length = 827

 Score = 40.0 bits (92), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 560 VLLWGPPGCGKTLLAKAVANESRANFISIKGP 591



 Score = 37.7 bits (86), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT++A  +A EL V F S S P +
Sbjct: 242 ILLHGPPGCGKTSIANALAGELQVPFISISAPSV 275


>gi|282856880|ref|ZP_06266138.1| cell division protease FtsH [Pyramidobacter piscolens W5455]
 gi|282585298|gb|EFB90608.1| cell division protease FtsH [Pyramidobacter piscolens W5455]
          Length = 607

 Score = 40.0 bits (92), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--V 108
           +L VGPPG GKT LA+ VA E  V F S SG    +      A  +  L    +++   +
Sbjct: 200 ILLVGPPGTGKTMLAKAVAGESNVPFFSMSGSEFVEMFVGMGASKVRDLFKQAKEKAPCI 259

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 260 VFIDEI 265


>gi|269991327|emb|CAX12511.1| cell division protein FtsH-like protein [Fucus vesiculosus]
          Length = 628

 Score = 40.0 bits (92), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--V 108
           V+ VGPPG GKT LA+ +A E GV F S SG    +      A  +  L    E     +
Sbjct: 210 VIIVGPPGTGKTLLAKAIAGEAGVPFISISGSEFVEMFVGIGASRVRDLFETAERNSPCI 269

Query: 109 LFIDEI 114
           LFIDEI
Sbjct: 270 LFIDEI 275


>gi|256762060|ref|ZP_05502640.1| peptidase M41 [Enterococcus faecalis T3]
 gi|257078476|ref|ZP_05572837.1| peptidase M41 [Enterococcus faecalis JH1]
 gi|256683311|gb|EEU23006.1| peptidase M41 [Enterococcus faecalis T3]
 gi|256986506|gb|EEU73808.1| peptidase M41 [Enterococcus faecalis JH1]
          Length = 709

 Score = 40.0 bits (92), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 214 VLLEGPPGTGKTLLAKAVAGEAGVPFYSISG 244


>gi|255971765|ref|ZP_05422351.1| peptidase M41 [Enterococcus faecalis T1]
 gi|255962783|gb|EET95259.1| peptidase M41 [Enterococcus faecalis T1]
          Length = 711

 Score = 40.0 bits (92), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 216 VLLEGPPGTGKTLLAKAVAGEAGVPFYSISG 246


>gi|296817467|ref|XP_002849070.1| replication factor C subunit 3 [Arthroderma otae CBS 113480]
 gi|238839523|gb|EEQ29185.1| replication factor C subunit 3 [Arthroderma otae CBS 113480]
          Length = 397

 Score = 40.0 bits (92), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 5/56 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           RP TL++ +G  +  + +  F+E+ +     L H+L  GPPG GKT+    +AR +
Sbjct: 52  RPDTLDDVSGHQDIIATINRFVESNR-----LPHLLLYGPPGTGKTSTILALARRI 102


>gi|288869580|ref|ZP_05975070.2| AAA family ATPase [Methanobrevibacter smithii DSM 2374]
 gi|288861611|gb|EFC93909.1| AAA family ATPase [Methanobrevibacter smithii DSM 2374]
          Length = 740

 Score = 40.0 bits (92), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 52/124 (41%), Gaps = 24/124 (19%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
           + E+  G  +    ++  IE    R E  D         VL  GPPG GKT LA+ VA E
Sbjct: 211 SYEDIGGLKDEVKKVREMIEIPLKRPELFDKLGIAPPKGVLMHGPPGTGKTLLAKAVASE 270

Query: 78  LGVNFRSTSGPVIAK---AGDLAALLTNLEDRD-----VLFIDEIHRLSIIVEEILYPAM 129
              +F + +GP I      G    L    E+ +     ++FIDE+  ++        P  
Sbjct: 271 SDAHFIAINGPEIMSKYVGGSEENLREYFEEAEENAPSIIFIDELDAIA--------PKR 322

Query: 130 EDFQ 133
           ED Q
Sbjct: 323 EDTQ 326


>gi|254168911|ref|ZP_04875751.1| ATPase, AAA family protein [Aciduliprofundum boonei T469]
 gi|197622175|gb|EDY34750.1| ATPase, AAA family protein [Aciduliprofundum boonei T469]
          Length = 437

 Score = 40.0 bits (92), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 32/61 (52%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          +   RP+ L +  G  +A + +  + E  +    +   ++ VG PG GKTT A+ +A E+
Sbjct: 6  VEKYRPKRLRDIVGNTQAINEILRWAEEWEEGKPSYKALILVGKPGCGKTTTARALANEM 65

Query: 79 G 79
          G
Sbjct: 66 G 66


>gi|195343803|ref|XP_002038480.1| GM10839 [Drosophila sechellia]
 gi|194133501|gb|EDW55017.1| GM10839 [Drosophila sechellia]
          Length = 711

 Score = 40.0 bits (92), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108
           VL VGPPG GKT LA+ VA E G  F + S   +     G+   L      +        
Sbjct: 468 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPST 527

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 528 IFIDEIDAL 536


>gi|134046379|ref|YP_001097864.1| replication factor C large subunit [Methanococcus maripaludis C5]
 gi|166977384|sp|A4FZL6|RFCL_METM5 RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|132664004|gb|ABO35650.1| replication factor C large subunit [Methanococcus maripaludis C5]
          Length = 484

 Score = 40.0 bits (92), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 8/107 (7%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +   RP++L +  G  +    L  +IE+     +    +L  GPPG GKTTLA  +A++ 
Sbjct: 5   VEKYRPKSLNDVAGHNKTKQALINWIESF-VNGQKQKPILLAGPPGSGKTTLAHAIAKDY 63

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLE-DRDVLFIDEIHRLS 118
             +    +        VIA+    AA   +L   R ++ +DE+  LS
Sbjct: 64  AFDVIELNASDKRNKDVIAQVVGTAATSKSLTGKRTLIVLDEVDGLS 110


>gi|56460112|ref|YP_155393.1| ATP-dependent protease ATP-binding subunit ClpX [Idiomarina
           loihiensis L2TR]
 gi|61211402|sp|Q5QXN9|CLPX_IDILO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|56179122|gb|AAV81844.1| ATP-dependent protease Clp, ATPase subunit [Idiomarina loihiensis
           L2TR]
          Length = 423

 Score = 40.0 bits (92), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LA+ +AR L V F       + +AG +   + N+            
Sbjct: 113 NILLIGPTGSGKTFLAETLARYLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 172

Query: 104 --EDRDVLFIDEIHRLS 118
              +R +++IDEI ++S
Sbjct: 173 EKAERGIVYIDEIDKIS 189


>gi|150017388|ref|YP_001309642.1| ATP-dependent metalloprotease FtsH [Clostridium beijerinckii NCIMB
           8052]
 gi|149903853|gb|ABR34686.1| ATP-dependent metalloprotease FtsH [Clostridium beijerinckii NCIMB
           8052]
          Length = 578

 Score = 40.0 bits (92), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNL------EDRDV 108
           V+  G PG GKT LA+ VA E GV F + SG   V    G  AA + NL      + + V
Sbjct: 185 VILYGDPGTGKTLLAKAVAGEAGVPFYALSGSDFVQVYVGVGAARVRNLFKKAKSQGKAV 244

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 245 IFIDEI 250


>gi|114330231|ref|YP_746453.1| ATP-dependent protease ATP-binding subunit [Nitrosomonas eutropha
           C91]
 gi|122314710|sp|Q0AJI3|CLPX_NITEC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|114307245|gb|ABI58488.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Nitrosomonas
           eutropha C91]
          Length = 427

 Score = 40.0 bits (92), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+         
Sbjct: 114 AKSNILLIGPTGSGKTLLAQTLARLLDVPFVIADATTLTEAGYVGEDVENIIQKLLQASN 173

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDEI ++S
Sbjct: 174 HDVEKAQRGIVYIDEIDKIS 193


>gi|57168871|ref|ZP_00368001.1| cell division protein (ftsH) [Campylobacter coli RM2228]
 gi|305431978|ref|ZP_07401145.1| ATP-dependent metalloprotease FtsH [Campylobacter coli JV20]
 gi|57019707|gb|EAL56393.1| cell division protein (ftsH) [Campylobacter coli RM2228]
 gi|304445062|gb|EFM37708.1| ATP-dependent metalloprotease FtsH [Campylobacter coli JV20]
          Length = 534

 Score = 40.0 bits (92), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           VL VGPPG+GKT +A+ VA E GV F   SG    +   G  A  +  L  R       +
Sbjct: 184 VLMVGPPGVGKTLIAKAVAGEAGVPFFYQSGSSFVEIYVGMGAKRVRELFSRAKMMAPSI 243

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 244 IFIDEI 249


>gi|322381175|ref|ZP_08055178.1| hypothetical protein PL1_0087 [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321154751|gb|EFX47022.1| hypothetical protein PL1_0087 [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 677

 Score = 40.0 bits (92), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL  GPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 199 VLLNGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 258

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 259 IFIDEI 264


>gi|281344564|gb|EFB20148.1| hypothetical protein PANDA_019466 [Ailuropoda melanoleuca]
          Length = 389

 Score = 40.0 bits (92), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 56/124 (45%), Gaps = 23/124 (18%)

Query: 8   LSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV--------L 58
           L  N+S ED  ++S        E  G  E    L+  IE      E    V        L
Sbjct: 118 LVYNMSHEDPGNVSY------SEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCL 171

Query: 59  FVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA-GDLAALLTNLED--RD----VLF 110
             GPPG GKT LA+ VA +L  NF +  S  ++ K  G+ A L+  + +  RD    ++F
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESACLIREMFNYARDHQPCIIF 231

Query: 111 IDEI 114
           +DEI
Sbjct: 232 MDEI 235


>gi|260939858|ref|XP_002614229.1| hypothetical protein CLUG_05714 [Clavispora lusitaniae ATCC
          42720]
 gi|238852123|gb|EEQ41587.1| hypothetical protein CLUG_05714 [Clavispora lusitaniae ATCC
          42720]
          Length = 339

 Score = 40.0 bits (92), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+ L++   Q  A   L+  +++A      L H+LF GPPG GKT+    +A++L
Sbjct: 19 RPKKLDDVASQDHAVRVLQKTLQSAN-----LPHMLFYGPPGTGKTSTVLALAKQL 69


>gi|269120919|ref|YP_003309096.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Sebaldella
           termitidis ATCC 33386]
 gi|268614797|gb|ACZ09165.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sebaldella
           termitidis ATCC 33386]
          Length = 408

 Score = 40.0 bits (92), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 68/148 (45%), Gaps = 30/148 (20%)

Query: 1   MMDREGLLSRNVSQEDADISLLRP----RTLEEFT-GQVEACSNLKVFIEAAKARA---- 51
           +++ E     N  +ED  + L +P    + L+++  GQ EA   L V +     R     
Sbjct: 42  LIEDEMKYDNNYLEEDHGLKLYKPSEIKKKLDDYIIGQDEAKKVLAVSVYNHYKRITHKL 101

Query: 52  EALD-------HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALL 100
           + +D       +VL +GP G GKT LAQ +AR L V F       + +AG    D+  +L
Sbjct: 102 QNVDDIELQKSNVLLMGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGDDVENVL 161

Query: 101 TNL---EDRD-------VLFIDEIHRLS 118
             L    D D       +++IDEI +++
Sbjct: 162 LKLIKAADYDINAAQHGIIYIDEIDKIA 189


>gi|303271193|ref|XP_003054958.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226462932|gb|EEH60210.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 833

 Score = 40.0 bits (92), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 5/59 (8%)

Query: 29  EFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           +FT +VE  +     + A +A+      VLF GPPG GKT LA+ VA E GV F   +G
Sbjct: 260 DFTYEVEDDN-----LSAERAKLSIPKGVLFEGPPGTGKTLLAKAVAGEAGVPFFYANG 313


>gi|146303379|ref|YP_001190695.1| TBP-interacting protein TIP49 [Metallosphaera sedula DSM 5348]
 gi|145701629|gb|ABP94771.1| TBP-interacting protein TIP49 [Metallosphaera sedula DSM 5348]
          Length = 452

 Score = 40.0 bits (92), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 28/50 (56%)

Query: 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
            GQ+EA     V ++  K    A   +L VGPPG GKT LA  +A+ELG
Sbjct: 39 LVGQLEAREAAWVVVQLIKQGKMAGKGILLVGPPGTGKTALAVGIAKELG 88


>gi|15234455|ref|NP_195376.1| AAA-type ATPase family protein [Arabidopsis thaliana]
 gi|4006905|emb|CAB16835.1| ATPase-like protein [Arabidopsis thaliana]
 gi|7270606|emb|CAB80324.1| ATPase-like protein [Arabidopsis thaliana]
          Length = 620

 Score = 40.0 bits (92), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 70/156 (44%), Gaps = 31/156 (19%)

Query: 38  SNLKVFIEA-AKARAEALDH------VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           ++LK  IE  A+A A    H      ++F GPPG GKT +A+ +AR+ G+++   +G  +
Sbjct: 347 TSLKKRIERLARATANTKSHQAPFRNMMFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV 406

Query: 91  AKAGDLAAL----LTNLEDRD----VLFIDE-----IHRLSIIVEEILYPAMEDFQLDLM 137
           A  G  A      + +   +     +LFIDE       R S  + E    A+      L+
Sbjct: 407 APLGSQAVTKIHQIFDWAKKSNKGLLLFIDEADAFLCERNSTYMSEAQRSALN----ALL 462

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
              G  +R +        L+ AT R G L + + DR
Sbjct: 463 FRTGDQSRDI-------VLVLATNRRGDLDSAVTDR 491


>gi|323508048|emb|CBQ67919.1| probable MSP1-intra-mitochondrial sorting protein [Sporisorium
           reilianum]
          Length = 399

 Score = 40.0 bits (92), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-----RSTSGPVIAKAGDLAALLTNLEDR---DV 108
           VL  GPPG GKT LA+ +A+E G  F      + +     ++  L A L +L  +    +
Sbjct: 124 VLLYGPPGTGKTMLAKALAKESGATFINMHVSTLTNKWFGESNKLVAALFSLARKLQPSI 183

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 184 IFIDEI 189


>gi|315925531|ref|ZP_07921741.1| exopolyphosphatase [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315621072|gb|EFV01043.1| exopolyphosphatase [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 652

 Score = 40.0 bits (92), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 46/103 (44%), Gaps = 15/103 (14%)

Query: 27  LEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
             +  G+ EA  NL   +       + A   A     VL VGPPG GKT LA+ VA E  
Sbjct: 194 FSDVAGEEEAKENLSEIVSYLDDPKQYANIGATMPKGVLLVGPPGTGKTMLAKAVAGEAN 253

Query: 80  VNFRSTSGPVIAK------AGDLAALLTNLEDRD--VLFIDEI 114
           V F S SG    +      A  +  L    +++   ++F+DEI
Sbjct: 254 VPFFSISGSEFVEMFVGMGASKVRDLFKQAKEKAPCIVFVDEI 296


>gi|312282051|dbj|BAJ33891.1| unnamed protein product [Thellungiella halophila]
          Length = 693

 Score = 40.0 bits (92), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL +GPPG GKT LA+ +A E GV F S SG
Sbjct: 262 VLLIGPPGTGKTLLAKAIAGEAGVPFFSISG 292


>gi|303244620|ref|ZP_07330953.1| ATPase associated with various cellular activities AAA_3
           [Methanothermococcus okinawensis IH1]
 gi|302485046|gb|EFL47977.1| ATPase associated with various cellular activities AAA_3
           [Methanothermococcus okinawensis IH1]
          Length = 310

 Score = 40.0 bits (92), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 12/88 (13%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDR---- 106
           HVL  G PGL KTTLA+  ++ +G+ F    G     P     G++  + T         
Sbjct: 33  HVLLEGVPGLAKTTLAKSFSKCMGLYFSRVQGTPDLIPSDITGGEIYKMQTGEFQYIPGP 92

Query: 107 ---DVLFIDEIHRLSIIVEEILYPAMED 131
              +++ +DEI+R+S   +  L  AME+
Sbjct: 93  LFANIVLVDEINRMSPKTQSALLEAMEE 120


>gi|298492637|ref|YP_003722814.1| DNA polymerase III subunits gamma and tau ['Nostoc azollae' 0708]
 gi|298234555|gb|ADI65691.1| DNA polymerase III, subunits gamma and tau ['Nostoc azollae' 0708]
          Length = 663

 Score = 40.0 bits (92), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 4/90 (4%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP++  E  GQ    + L   I +AK         LF GP G GKT+ A+++A+ L    
Sbjct: 11  RPKSFAELVGQEAITTTLTNAISSAKIAPA----YLFTGPRGTGKTSSARILAKSLNCLK 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID 112
                P+     D+   +T     DV+ ID
Sbjct: 67  SDKPTPIPCGVCDICQGITKGYSLDVIEID 96


>gi|297822823|ref|XP_002879294.1| hypothetical protein ARALYDRAFT_482018 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297325133|gb|EFH55553.1| hypothetical protein ARALYDRAFT_482018 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 695

 Score = 40.0 bits (92), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL +GPPG GKT LA+ +A E GV F S SG
Sbjct: 263 VLLIGPPGTGKTLLAKAIAGEAGVPFFSISG 293


>gi|281491647|ref|YP_003353627.1| ATP-dependent endopeptidase Clp ATP-binding subunit ClpX
           [Lactococcus lactis subsp. lactis KF147]
 gi|281375365|gb|ADA64878.1| ATP-dependent endopeptidase Clp, ATP-binding subunit ClpX
           [Lactococcus lactis subsp. lactis KF147]
          Length = 411

 Score = 40.0 bits (92), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +A+ L V F       + +AG    D+  +L  L        
Sbjct: 111 NILLIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLLQASDFNI 170

Query: 104 --EDRDVLFIDEIHRLS 118
              +R +++IDEI +++
Sbjct: 171 ERAERGIIYIDEIDKIA 187


>gi|255974765|ref|ZP_05425351.1| peptidase M41 [Enterococcus faecalis T2]
 gi|255967637|gb|EET98259.1| peptidase M41 [Enterococcus faecalis T2]
          Length = 711

 Score = 40.0 bits (92), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 216 VLLEGPPGTGKTLLAKAVAGEAGVPFYSISG 246


>gi|255323418|ref|ZP_05364549.1| Cell division protease FtsH homolog [Campylobacter showae RM3277]
 gi|255299455|gb|EET78741.1| Cell division protease FtsH homolog [Campylobacter showae RM3277]
          Length = 642

 Score = 40.0 bits (92), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNL--EDRDV 108
           VL VGPPG GKT LA+ VA E  V F S SG       V   A  +  L  N   E   +
Sbjct: 214 VLLVGPPGTGKTLLAKAVAGEADVPFFSVSGSSFIEMFVGVGASRVRDLFENAKKEAPAI 273

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 274 VFIDEI 279


>gi|227502057|ref|ZP_03932106.1| cell division protein FtsH [Corynebacterium accolens ATCC 49725]
 gi|227077212|gb|EEI15175.1| cell division protein FtsH [Corynebacterium accolens ATCC 49725]
          Length = 808

 Score = 40.0 bits (92), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 203 VLLYGPPGTGKTLLARAVAGEAGVPFYSISG 233


>gi|255080816|ref|XP_002503981.1| predicted protein [Micromonas sp. RCC299]
 gi|226519248|gb|ACO65239.1| predicted protein [Micromonas sp. RCC299]
          Length = 239

 Score = 40.0 bits (92), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 8/79 (10%)

Query: 44  IEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLT 101
           + A +AR      VLF GPPG GKT LA+ +A E GV F   +G    +   G  A  + 
Sbjct: 5   LSAERARLSIPKGVLFEGPPGTGKTLLAKAIAGEAGVPFFYANGSEFVEMFVGVAAKRVR 64

Query: 102 NLEDR------DVLFIDEI 114
           +L  R       ++FIDE+
Sbjct: 65  DLFKRARQVSPSIIFIDEL 83


>gi|291456563|ref|ZP_06595953.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Bifidobacterium breve DSM 20213]
 gi|291381840|gb|EFE89358.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Bifidobacterium breve DSM 20213]
          Length = 453

 Score = 40.0 bits (92), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---ED 105
           A  ++L +GP G+GKT LAQ +AR + V F  T    + +AG    D+  +L  L    D
Sbjct: 139 AKSNILLLGPTGVGKTYLAQSLARVMNVPFVITDATTLTEAGYVGDDVETVLQRLLQAAD 198

Query: 106 RDV-------LFIDEIHRLS 118
            DV       ++IDEI +++
Sbjct: 199 GDVSRAQHGIIYIDEIDKIA 218


>gi|195502105|ref|XP_002098077.1| GE10164 [Drosophila yakuba]
 gi|194184178|gb|EDW97789.1| GE10164 [Drosophila yakuba]
          Length = 672

 Score = 40.0 bits (92), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108
           VL VGPPG GKT LA+ VA E G  F + S   +     G+   L      +        
Sbjct: 429 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPST 488

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 489 IFIDEIDAL 497


>gi|281357811|ref|ZP_06244297.1| ATP-dependent protease La [Victivallis vadensis ATCC BAA-548]
 gi|281315758|gb|EFA99785.1| ATP-dependent protease La [Victivallis vadensis ATCC BAA-548]
          Length = 805

 Score = 40.0 bits (92), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 75/162 (46%), Gaps = 32/162 (19%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA----------GDLAA-LLTNLE 104
           +  VGPPG+GKT+L Q +AR +  NF R + G V  +A          G +   ++ NL+
Sbjct: 378 LCLVGPPGVGKTSLGQSIARAMNRNFVRVSLGGVRDEAEIRGHRRTYVGAMPGRIVQNLK 437

Query: 105 D----RDVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152
                  V  +DEI +L        +  + E+L PA +++  +    E      V  +LS
Sbjct: 438 KAGTANPVFMLDEIDKLANDFRGDPASALLEVLDPA-QNYAFNDHYLE------VDCDLS 490

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           +   IA    +  +  PL+DR  I IRL  Y   + + I +R
Sbjct: 491 KVFFIATANLLDTIPGPLRDRMEI-IRLPGYTSFEKREIARR 531


>gi|150400075|ref|YP_001323842.1| replication factor C large subunit [Methanococcus vannielii SB]
 gi|166977386|sp|A6URV8|RFCL_METVS RecName: Full=Replication factor C large subunit; Short=RFC large
          subunit; AltName: Full=Clamp loader large subunit
 gi|150012778|gb|ABR55230.1| AAA ATPase central domain protein [Methanococcus vannielii SB]
          Length = 492

 Score = 40.0 bits (92), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          +   RP++L +  G  +    L  +IE+   R      VL  GPPG GKTT+A  +A + 
Sbjct: 5  VEKYRPKSLNDVAGHSKTKEALCYWIESF-IRGNKQKPVLLFGPPGSGKTTMAHAIANDY 63

Query: 79 GVN 81
            +
Sbjct: 64 NFD 66


>gi|169849253|ref|XP_001831330.1| DNA replication factor [Coprinopsis cinerea okayama7#130]
 gi|116507598|gb|EAU90493.1| DNA replication factor [Coprinopsis cinerea okayama7#130]
          Length = 347

 Score = 40.0 bits (92), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 6/66 (9%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          +   RP +LE+     +  + +  FIE  +     L H+LF GPPG GKT+    VAR +
Sbjct: 31 VEKYRPVSLEDVVSHQDITTTIDRFIEKNR-----LPHLLFYGPPGTGKTSTILAVARRI 85

Query: 79 -GVNFR 83
           G +++
Sbjct: 86 YGSDYK 91


>gi|124087412|ref|XP_001346845.1| AAA ATPase, cell division control protein [Paramecium tetraurelia
           strain d4-2]
 gi|145474957|ref|XP_001423501.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|50057234|emb|CAH03218.1| AAA ATPase, cell division control protein, putative [Paramecium
           tetraurelia]
 gi|124390561|emb|CAK56103.1| unnamed protein product [Paramecium tetraurelia]
          Length = 632

 Score = 40.0 bits (92), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 8/70 (11%)

Query: 26  TLEEFTGQVEAC-----SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           +L+E   +++ C      N +VF +  K R  A   VL  GPPG GKT LA+ VA     
Sbjct: 377 SLQELRKELDNCLVLPIQNPEVF-QKFKVRPPA--GVLLWGPPGCGKTLLAKAVANASRA 433

Query: 81  NFRSTSGPVI 90
           NF +  GP I
Sbjct: 434 NFIAVKGPEI 443


>gi|49246401|gb|AAT58332.1| FtsH-like protein [Hordeum vulgare subsp. spontaneum]
 gi|49246403|gb|AAT58333.1| FtsH-like protein [Triticum monococcum]
 gi|49246417|gb|AAT58340.1| FtsH-like protein [Hordeum vulgare subsp. spontaneum]
 gi|49246435|gb|AAT58349.1| FtsH-like protein [Triticum monococcum]
          Length = 152

 Score = 40.0 bits (92), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
          VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 57 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 87


>gi|39938793|ref|NP_950559.1| ATP-dependent Zn protease [Onion yellows phytoplasma OY-M]
 gi|39721902|dbj|BAD04392.1| ATP-dependent Zn protease [Onion yellows phytoplasma OY-M]
          Length = 422

 Score = 40.0 bits (92), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 76/159 (47%), Gaps = 16/159 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDRD------V 108
           VL  GPPG GKT LA+ +A E+ + F + SG   V    G  A+ + +L  +       +
Sbjct: 216 VLLEGPPGTGKTLLAKALANEVKIPFYAVSGSEFVEVYVGVGASRIRDLFQKAKRTTPCI 275

Query: 109 LFIDEIHRLSIIVEE--ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
           +FIDEI  L    +   I+     D  L+ ++ E          LS+  +IAAT R+ +L
Sbjct: 276 IFIDEIDALGAKRKNNSIIESREHDQSLNQLLLEMDGF----FKLSQIIIIAATNRIDML 331

Query: 167 TNPL--QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAV 203
              L    RF   I++N   ++  + I++  AK   +++
Sbjct: 332 DPALIRPGRFDRKIKINLPNLKAREAILKVHAKNKNISL 370


>gi|329116171|ref|ZP_08244888.1| ATP-dependent metallopeptidase HflB [Streptococcus parauberis NCFD
           2020]
 gi|326906576|gb|EGE53490.1| ATP-dependent metallopeptidase HflB [Streptococcus parauberis NCFD
           2020]
          Length = 668

 Score = 40.0 bits (92), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLE--DRDV 108
           VL  GPPG GKT LA+ VA E  V F S SG       V   A  + +L  + +  +R +
Sbjct: 223 VLLEGPPGTGKTLLAKAVAGEAAVPFFSISGSDFVEMFVGVGASRVRSLFEDAKKAERAI 282

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 283 IFIDEI 288


>gi|325970630|ref|YP_004246821.1| ATP-dependent metalloprotease FtsH [Spirochaeta sp. Buddy]
 gi|324025868|gb|ADY12627.1| ATP-dependent metalloprotease FtsH [Spirochaeta sp. Buddy]
          Length = 651

 Score = 40.0 bits (92), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 38/66 (57%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL--EDRD----V 108
           VL VGPPG GKT LA+ VA E GV F   SG    +   G  AA + +L  + R+    +
Sbjct: 244 VLLVGPPGTGKTLLAKAVAGEAGVPFFKMSGADFVEMFVGVGAARVRDLFRQARENSPCI 303

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 304 IFIDEI 309


>gi|317499321|ref|ZP_07957593.1| ATP-dependent metallopeptidase HflB [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316893412|gb|EFV15622.1| ATP-dependent metallopeptidase HflB [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 672

 Score = 40.0 bits (92), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 20/30 (66%), Positives = 21/30 (70%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           L VGPPG GKT LA+ VA E GV F S SG
Sbjct: 211 LLVGPPGTGKTLLAKAVAGEAGVPFFSLSG 240


>gi|307290189|ref|ZP_07570107.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0411]
 gi|306498745|gb|EFM68244.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0411]
          Length = 728

 Score = 40.0 bits (92), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 233 VLLEGPPGTGKTLLAKAVAGEAGVPFYSISG 263


>gi|319788748|ref|YP_004090063.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ruminococcus
           albus 7]
 gi|315450615|gb|ADU24177.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ruminococcus
           albus 7]
          Length = 423

 Score = 40.0 bits (92), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLT--------NL 103
           +VL +GP G GKT LAQ +AR L V F       + +AG    D+  +LT        N+
Sbjct: 121 NVLLLGPTGTGKTLLAQTLARLLNVPFAIADATTLTEAGYVGDDVENVLTRLIQAANYNV 180

Query: 104 ED--RDVLFIDEIHRLS 118
           E+    +++IDEI +++
Sbjct: 181 EEASHGIIYIDEIDKIA 197


>gi|268607891|ref|ZP_06141622.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Ruminococcus
           flavefaciens FD-1]
          Length = 742

 Score = 40.0 bits (92), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 5/76 (6%)

Query: 12  VSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKA----RAEALDHVLFVGPPGLG 66
           VS ED   ++ L  R  +   GQ EA + +   ++ +KA      + L  +LFVGP G+G
Sbjct: 432 VSNEDITGLAGLEDRMKKRIFGQDEAIAQVVNAVKFSKAGLLEENKPLASLLFVGPTGVG 491

Query: 67  KTTLAQVVARELGVNF 82
           KT +A+ +A ELGV  
Sbjct: 492 KTEIAKSLAEELGVKL 507


>gi|257461436|ref|ZP_05626532.1| Cell division protease FtsH homolog [Campylobacter gracilis RM3268]
 gi|257441159|gb|EEV16306.1| Cell division protease FtsH homolog [Campylobacter gracilis RM3268]
          Length = 649

 Score = 40.0 bits (92), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108
           VL VGPPG GKT LA+ VA E  V F S SG       V   A  +  L  N + +   +
Sbjct: 215 VLLVGPPGTGKTLLAKAVAGEADVPFFSVSGSSFIEMFVGVGASRVRDLFDNAKKQAPAI 274

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 275 VFIDEI 280


>gi|241896601|ref|ZP_04783897.1| M41 family endopeptidase FtsH [Weissella paramesenteroides ATCC
           33313]
 gi|241870082|gb|EER73833.1| M41 family endopeptidase FtsH [Weissella paramesenteroides ATCC
           33313]
          Length = 689

 Score = 40.0 bits (92), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108
           VL  GPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 231 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKAAPSI 290

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 291 IFIDEI 296


>gi|261200183|ref|XP_002626492.1| activator 1 subunit 3 [Ajellomyces dermatitidis SLH14081]
 gi|239593564|gb|EEQ76145.1| activator 1 subunit 3 [Ajellomyces dermatitidis SLH14081]
 gi|239607557|gb|EEQ84544.1| replication factor C [Ajellomyces dermatitidis ER-3]
 gi|327357386|gb|EGE86243.1| replication factor C [Ajellomyces dermatitidis ATCC 18188]
          Length = 404

 Score = 40.0 bits (92), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           RP TLE+ +G  +    +  FI+  +     L H+L  GPPG GKT+    +AR +
Sbjct: 52  RPNTLEDVSGHQDIIGTINRFIDTNR-----LPHLLLYGPPGTGKTSTILALARRI 102


>gi|258404645|ref|YP_003197387.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Desulfohalobium retbaense DSM 5692]
 gi|257796872|gb|ACV67809.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Desulfohalobium retbaense DSM 5692]
          Length = 414

 Score = 40.0 bits (92), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD--------LAALLTNLE--- 104
           ++LFVGP G GKT +AQ +AR L V F       + +AG         L  LL N +   
Sbjct: 110 NILFVGPTGSGKTLMAQTLARILNVPFAIADATNLTEAGYVGEDVENILVQLLQNADYDL 169

Query: 105 ---DRDVLFIDEIHRLS 118
               + +++IDEI +++
Sbjct: 170 EKASKGIIYIDEIDKVA 186


>gi|225620830|ref|YP_002722088.1| DNA polymerase III subunit gamma and tau [Brachyspira
           hyodysenteriae WA1]
 gi|225215650|gb|ACN84384.1| DNA polymerase III, gamma and tau subunits [Brachyspira
           hyodysenteriae WA1]
          Length = 527

 Score = 40.0 bits (92), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 103/255 (40%), Gaps = 49/255 (19%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T EE  GQ      +   I A K  A A    LF G  G+GKT+LA+++A+ L    
Sbjct: 13  RPQTFEEVIGQEHITKTISKSI-AQKKIAHAY---LFSGAHGVGKTSLARIIAKALNC-- 66

Query: 83  RSTSGPVIAKAGDLAALLTNLED---RDVLFID--------------EIHRLS------- 118
              +GP     G +    T +E+    DV+ ID              E  R+S       
Sbjct: 67  --VNGPTDKPCG-VCPSCTQIENGTPLDVIEIDGASNRGIENIRTIIENVRISPVAGKYK 123

Query: 119 -IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             I++E+     E F   L   E P A  V         I ATT    +   ++ R    
Sbjct: 124 VYIIDEVHQITNEAFNALLKTLEEPPAHVV--------FILATTEAERVLPTIRSRCQ-- 173

Query: 178 IRLNFYE--IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
            +  F    IEDL+ I++       +   +EA   IA ++RG+ R +  +L ++   A  
Sbjct: 174 -QYTFKSLGIEDLEKILKGILDKENIKYDEEAIFLIAKQARGSVRDSETILEKM--IAYT 230

Query: 236 AHAKTITREIADAAL 250
              K IT    +A +
Sbjct: 231 TDKKYITSADVNAVV 245


>gi|225377197|ref|ZP_03754418.1| hypothetical protein ROSEINA2194_02843 [Roseburia inulinivorans DSM
           16841]
 gi|225210957|gb|EEG93311.1| hypothetical protein ROSEINA2194_02843 [Roseburia inulinivorans DSM
           16841]
          Length = 604

 Score = 40.0 bits (92), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E  V F S SG    +      A  +  L    +++   +
Sbjct: 201 VLLVGPPGTGKTMLAKAVAGESNVPFFSMSGSEFVEMFVGMGASKVRDLFGQAKEKAPCI 260

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 261 VFIDEI 266


>gi|194898883|ref|XP_001978992.1| GG13037 [Drosophila erecta]
 gi|190650695|gb|EDV47950.1| GG13037 [Drosophila erecta]
          Length = 666

 Score = 40.0 bits (92), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108
           VL VGPPG GKT LA+ VA E G  F + S   +     G+   L      +        
Sbjct: 423 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPST 482

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 483 IFIDEIDAL 491


>gi|188578370|ref|YP_001915299.1| ATP-dependent protease ATP-binding subunit ClpX [Xanthomonas oryzae
           pv. oryzae PXO99A]
 gi|238689531|sp|B2SMI2|CLPX_XANOP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|188522822|gb|ACD60767.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Xanthomonas
           oryzae pv. oryzae PXO99A]
          Length = 428

 Score = 40.0 bits (92), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 58/133 (43%), Gaps = 29/133 (21%)

Query: 15  EDADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAE----------ALDHVLF 59
           + A  SL +PR + E       GQ+ A   L V +     R E          A  ++L 
Sbjct: 60  QSARSSLPKPREILEVLDQYVIGQLRAKRTLAVAVYNHYKRIESRSKNDDVELAKSNILL 119

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDV---- 108
           VGP G GKT LA+ +AR L V F       + +AG +   + N+        D DV    
Sbjct: 120 VGPTGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQ 179

Query: 109 ---LFIDEIHRLS 118
              ++IDEI ++S
Sbjct: 180 QGIVYIDEIDKIS 192


>gi|164427356|ref|XP_956468.2| hypothetical protein NCU03359 [Neurospora crassa OR74A]
 gi|157071709|gb|EAA27232.2| hypothetical protein NCU03359 [Neurospora crassa OR74A]
          Length = 828

 Score = 40.0 bits (92), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F + SG
Sbjct: 404 VLLVGPPGTGKTLLARAVAGEAGVPFFNMSG 434


>gi|119898361|ref|YP_933574.1| ATP-dependent protease ATP-binding subunit ClpX [Azoarcus sp. BH72]
 gi|166214754|sp|A1K782|CLPX_AZOSB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|119670774|emb|CAL94687.1| ATP-dependent Clp protease ATP-binding subunit [Azoarcus sp. BH72]
          Length = 422

 Score = 40.0 bits (92), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 49/112 (43%), Gaps = 25/112 (22%)

Query: 32  GQVEACSNLKVFIEAAKARAEALD-----------HVLFVGPPGLGKTTLAQVVARELGV 80
           GQ +A  NL V +     R   L            ++L +GP G GKT LAQ +AR L V
Sbjct: 80  GQAQAKRNLSVAVYNHYKRLRHLSGRQDEVELSKSNILLIGPTGSGKTLLAQTLARLLNV 139

Query: 81  NFRSTSGPVIAKAGDLAALLTNL-------EDRDV-------LFIDEIHRLS 118
            F       + +AG +   + N+        D DV       ++IDEI ++S
Sbjct: 140 PFVMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQQGIVYIDEIDKIS 191


>gi|222054005|ref|YP_002536367.1| ATP-dependent protease La [Geobacter sp. FRC-32]
 gi|221563294|gb|ACM19266.1| ATP-dependent protease La [Geobacter sp. FRC-32]
          Length = 817

 Score = 40.0 bits (92), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 32/162 (19%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA----------GDLAA-LLTNLE 104
           + FVGPPG+GKT+L + +AR +G  F R + G V  +A          G L   ++  L+
Sbjct: 359 LCFVGPPGVGKTSLGKSIARAMGRKFVRISLGGVRDEAEIRGHRRTYVGALPGRIIQGLK 418

Query: 105 ----DRDVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152
               +  V  +DE+ +L        S  + E+L P       D  +       ++  NLS
Sbjct: 419 QAGSNNPVFMLDELDKLGADFRGDPSSALLEVLDPEQNHSFSDHYI-------NLPFNLS 471

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
               IA   ++  +  PL+DR  + I L+ Y  E+   I +R
Sbjct: 472 DVMFIATANQMDTIPGPLRDRMEV-ISLSGYTEEEKLQIAKR 512


>gi|49246461|gb|AAT58362.1| FtsH-like protein [Hordeum vulgare subsp. spontaneum]
          Length = 152

 Score = 40.0 bits (92), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
          VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 56 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 86


>gi|440874|gb|AAA61616.1| hLON ATP-dependent protease [Homo sapiens]
          Length = 962

 Score = 40.0 bits (92), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 87/207 (42%), Gaps = 33/207 (15%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLA 71
           S E+ D++  +    E+  G  +    +  FI  ++ R      +L F GPPG+GKT++A
Sbjct: 477 SNENLDLARAQAVLEEDHYGMEDVKKRILEFIAVSQLRGSTQGKILCFYGPPGVGKTSIA 536

Query: 72  QVVARELGVN-FRSTSGP--------------VIAKAGDLAALLTNLEDRD-VLFIDEIH 115
           + +AR L    FR + G               V A  G +   L   +  + ++ IDE+ 
Sbjct: 537 RSIARALNREYFRFSVGGMTDVTEIKGHRRTYVGAMPGKIIQCLKKTKTENPLILIDEVD 596

Query: 116 RL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           ++        S  + E+L P      LD  +        V ++LS+   I        + 
Sbjct: 597 KIGRGYQGDPSSALLELLDPEQNANFLDHYL-------DVPVDLSKVLFICTANVTDTIP 649

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQR 194
            PL+DR  + I ++ Y  ++   I +R
Sbjct: 650 EPLRDRMEM-INVSGYVAQEKLAIAER 675


>gi|15673133|ref|NP_267307.1| ATP-dependent protease ATP-binding subunit [Lactococcus lactis
           subsp. lactis Il1403]
 gi|13878442|sp|Q9CGE6|CLPX_LACLA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|12724114|gb|AAK05249.1|AE006347_7 ATP dependent Clp protease [Lactococcus lactis subsp. lactis
           Il1403]
          Length = 411

 Score = 40.0 bits (92), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +A+ L V F       + +AG    D+  +L  L        
Sbjct: 111 NILLIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLLQASDFNI 170

Query: 104 --EDRDVLFIDEIHRLS 118
              +R +++IDEI +++
Sbjct: 171 ERAERGIIYIDEIDKIA 187


>gi|84499431|ref|ZP_00997719.1| ATP-dependent protease ATP-binding subunit [Oceanicola batsensis
           HTCC2597]
 gi|84392575|gb|EAQ04786.1| ATP-dependent protease ATP-binding subunit [Oceanicola batsensis
           HTCC2597]
          Length = 422

 Score = 40.0 bits (92), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 17/98 (17%)

Query: 38  SNLKVFIEAAKARAE---ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG 94
           ++ K    AAK+  +   A  ++L +GP G GKT LAQ +AR L V F       + +AG
Sbjct: 93  NHYKRLNHAAKSGGDIELAKSNILLIGPTGCGKTLLAQTLARILDVPFTMADATTLTEAG 152

Query: 95  DLAALLTNL--------------EDRDVLFIDEIHRLS 118
            +   + N+                R +++IDE+ +++
Sbjct: 153 YVGEDVENIILKLLQSSEYNVEKAQRGIVYIDEVDKIT 190


>gi|332977274|gb|EGK14065.1| ATP-dependent Clp protease ATP-binding subunit [Psychrobacter sp.
           1501(2011)]
          Length = 425

 Score = 40.0 bits (92), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDV 108
           ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+        D DV
Sbjct: 128 NILLIGPTGSGKTLLAQTLARMLDVPFAMADATTLTEAGYVGEDVENIVQKLLQAADYDV 187

Query: 109 -------LFIDEIHRLS 118
                  +++DEI ++S
Sbjct: 188 ERAEQGIIYVDEIDKIS 204


>gi|331003433|ref|ZP_08326932.1| hypothetical protein HMPREF0491_01794 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412479|gb|EGG91868.1| hypothetical protein HMPREF0491_01794 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 603

 Score = 40.0 bits (92), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--V 108
           +L VGPPG GKT LA+ VA E  V F S SG    +      A  +  L    +++   +
Sbjct: 201 ILLVGPPGTGKTMLAKAVAGEANVPFFSMSGSEFVEMFVGMGASKVRDLFKQAKEKAPCI 260

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 261 VFIDEI 266


>gi|325179752|emb|CCA14155.1| ATPase putative [Albugo laibachii Nc14]
          Length = 551

 Score = 40.0 bits (92), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 66/160 (41%), Gaps = 35/160 (21%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAK-----AGDLAALLTNLEDRD--V 108
           VLF GPPG GKT  A+++A++ G+         V++K        L+ +    E  D  +
Sbjct: 334 VLFEGPPGTGKTLTARIIAQQAGIPMIHIPVEAVVSKWYGESEKKLSTIFDACEQLDGAI 393

Query: 109 LFIDE-----------IHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLI 157
           +FIDE           IH  S  +  +L   +E F+                +  + T+I
Sbjct: 394 IFIDEIDALAGDRSGGIHEASRRILSVLLQKVEGFE----------------SAQKTTVI 437

Query: 158 AATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
            AT R   L   L  RF + IR +  +      I +R AK
Sbjct: 438 CATNRKEDLDAALLSRFDLCIRYDLPDQSTRTAIFKRYAK 477


>gi|311235340|gb|ADP88194.1| response regulator receiver protein [Desulfovibrio vulgaris RCH1]
          Length = 682

 Score = 40.0 bits (92), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 87/221 (39%), Gaps = 53/221 (23%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF------------------RSTSGPVIAKAGDLAA 98
           + FVGPPG+GKT++ Q +A+ +   F                  R+ +G +  +   + A
Sbjct: 248 LCFVGPPGVGKTSVGQAIAKAMNRPFVRLSLADLRDEAELRGHRRTYAGAMPGRI--MQA 305

Query: 99  LLTNLEDRDVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN 150
           L T      V  +DE+ ++        ++ + E+L P   D  LD  V        +  +
Sbjct: 306 LRTAGVRNPVFMLDEMDKMGQDARSDPAMALLELLDPEQNDRFLDRYV-------DLPFD 358

Query: 151 LSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL----KTIVQRGAKLTGLAVTDE 206
           LS    IA       +  PL DR  +     + E E      + ++ R  +  GL     
Sbjct: 359 LSEVMFIATANDTSRMRGPLLDRLEVVPFAGYSEDEKADIASRFLLPRQLREHGLV---- 414

Query: 207 AACEIAMRSRGTPRIAGRLLRR-VRDFAEVAHAKTITREIA 246
                       P +A   LRR VRD+ + A  + + RE+A
Sbjct: 415 ---------HPRPVVADEALRRIVRDYTDEAGVRGLERELA 446


>gi|311030169|ref|ZP_07708259.1| stage V sporulation protein K [Bacillus sp. m3-13]
          Length = 310

 Score = 40.0 bits (92), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 84/202 (41%), Gaps = 42/202 (20%)

Query: 56  HVLFVGPPGLGKTTLAQVVAREL-GVNFRSTSGPVIAKAGDLAALL---TNLEDRD---- 107
           H++F G PG GKTT+A+++ +    +N  S    + A+  DL       T  + RD    
Sbjct: 89  HMMFKGNPGTGKTTVARLIGKLFCDMNVLSKGHLIEAERADLVGEYIGHTAQKTRDLVKK 148

Query: 108 ----VLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLSRFT 155
               +LF+DE + L+   E        + L   MED Q D ++      R     +  F 
Sbjct: 149 ALGGILFVDEAYSLARGGEKDFGKEAIDTLVKHMEDKQHDFILILAGYQRE----MEEF- 203

Query: 156 LIAATTRVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEI--- 211
                    L TNP L  RF I +    Y +E+L  I QR  K     ++ EA  ++   
Sbjct: 204 ---------LRTNPGLISRFPIIVDFPDYSVEELMEICQRMLKEREYIMSKEAEWKMREH 254

Query: 212 --AMRSRGTPRI--AGRLLRRV 229
              M+S   P     GR +R V
Sbjct: 255 LNQMKSVLLPSAFSNGRYIRNV 276


>gi|295094966|emb|CBK84057.1| ATP-dependent metalloprotease FtsH [Coprococcus sp. ART55/1]
          Length = 606

 Score = 40.0 bits (92), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--V 108
           +L VGPPG GKT LA+ VA E  V F S SG    +      A  +  L    +++   +
Sbjct: 204 ILLVGPPGTGKTMLAKAVAGEANVPFFSMSGSEFVEMFVGMGASKVRDLFQQAKEKAPCI 263

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 264 VFIDEI 269


>gi|256960612|ref|ZP_05564783.1| peptidase M41 [Enterococcus faecalis Merz96]
 gi|256951108|gb|EEU67740.1| peptidase M41 [Enterococcus faecalis Merz96]
          Length = 718

 Score = 40.0 bits (92), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 223 VLLEGPPGTGKTLLAKAVAGEAGVPFYSISG 253


>gi|256826248|ref|YP_003150208.1| membrane protease FtsH catalytic subunit [Kytococcus sedentarius
           DSM 20547]
 gi|256689641|gb|ACV07443.1| membrane protease FtsH catalytic subunit [Kytococcus sedentarius
           DSM 20547]
          Length = 698

 Score = 40.0 bits (92), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 201 VLLYGPPGTGKTLLARAVAGEAGVPFYSISG 231


>gi|255084099|ref|XP_002508624.1| predicted protein [Micromonas sp. RCC299]
 gi|226523901|gb|ACO69882.1| predicted protein [Micromonas sp. RCC299]
          Length = 717

 Score = 40.0 bits (92), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           +L VGPPG GKT LA+ VA E GV F  TSG
Sbjct: 251 LLLVGPPGTGKTMLARAVAGEAGVPFFYTSG 281


>gi|195111314|ref|XP_002000224.1| GI10108 [Drosophila mojavensis]
 gi|193916818|gb|EDW15685.1| GI10108 [Drosophila mojavensis]
          Length = 738

 Score = 40.0 bits (92), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108
           VL VGPPG GKT LA+ VA E G  F + S   +     G+   L      +        
Sbjct: 495 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPST 554

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 555 IFIDEIDAL 563


>gi|167465129|ref|ZP_02330218.1| Cell division protein ftsH [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 629

 Score = 40.0 bits (92), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL  GPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 151 VLLNGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 210

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 211 IFIDEI 216


>gi|145486997|ref|XP_001429504.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124396597|emb|CAK62106.1| unnamed protein product [Paramecium tetraurelia]
          Length = 412

 Score = 40.0 bits (92), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLED------RDV 108
           +LF GPPG GKT LA+ VA ++   F + S   + +   G+   L+  L +        V
Sbjct: 179 ILFYGPPGNGKTLLAKAVANQIKCCFFNVSASTLVQKHLGEGEKLMKTLFNVAFKFQPSV 238

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 239 IFIDEI 244


>gi|108763997|ref|YP_631762.1| hypothetical protein MXAN_3572 [Myxococcus xanthus DK 1622]
 gi|108467877|gb|ABF93062.1| conserved hypothetical protein [Myxococcus xanthus DK 1622]
          Length = 1855

 Score = 40.0 bits (92), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 26/44 (59%)

Query: 50   RAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA 93
            R + +  +L + PPG GKTTL + VA  LG+ F   +GP +  +
Sbjct: 1285 RTDRMGMLLLMSPPGYGKTTLMEYVASRLGLTFVKVNGPALGHS 1328


>gi|15679634|ref|NP_276751.1| cell division control protein Cdc48 [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|2622767|gb|AAB86112.1| cell division control protein Cdc48 [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 732

 Score = 40.0 bits (92), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 8/73 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
           T E+  G  E    ++  IE    R E  +         VL  GPPG GKT LA+ VA E
Sbjct: 203 TYEDIGGLKEEVKKVREMIEIPLKRPELFERLGITPPKGVLMHGPPGTGKTLLAKAVANE 262

Query: 78  LGVNFRSTSGPVI 90
              +F + +GP I
Sbjct: 263 SDAHFIAINGPEI 275


>gi|169771859|ref|XP_001820399.1| replication factor C subunit 3 [Aspergillus oryzae RIB40]
 gi|83768258|dbj|BAE58397.1| unnamed protein product [Aspergillus oryzae]
          Length = 398

 Score = 40.0 bits (92), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 5/56 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           RP TL++ +G  +  + +  F++A +     L H+L  GPPG GKT+    +AR +
Sbjct: 50  RPNTLDDVSGHQDILATINRFVDANR-----LPHLLLYGPPGTGKTSTILALARRI 100


>gi|28493446|ref|NP_787607.1| ATP-dependent protease ATP-binding subunit ClpX [Tropheryma
           whipplei str. Twist]
 gi|46576524|sp|Q83G50|CLPX_TROWT RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|28476487|gb|AAO44576.1| ATP-dependent Clp protease ATP-binding subunit [Tropheryma whipplei
           str. Twist]
          Length = 423

 Score = 40.0 bits (92), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA-----ALLTNLEDRD--- 107
           ++L +GP G GKT LAQ +AR L V F       + +AG +       LL  L+D D   
Sbjct: 120 NILLIGPTGCGKTYLAQTLARMLRVPFAVADATALTEAGYVGDDVENVLLKLLQDADFDI 179

Query: 108 ------VLFIDEIHRLS 118
                 ++ IDEI ++S
Sbjct: 180 TRAEAGIVCIDEIDKIS 196


>gi|85709567|ref|ZP_01040632.1| Cell division cycle protein [Erythrobacter sp. NAP1]
 gi|85688277|gb|EAQ28281.1| Cell division cycle protein [Erythrobacter sp. NAP1]
          Length = 742

 Score = 40.0 bits (92), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 20/38 (52%), Positives = 23/38 (60%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG 94
           VL  GPPG GKT LAQ VA E    F + +GP I  +G
Sbjct: 212 VLLHGPPGTGKTRLAQAVANESDAEFFTINGPEIMGSG 249


>gi|325846375|ref|ZP_08169344.1| ATP-dependent metallopeptidase HflB [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325481559|gb|EGC84599.1| ATP-dependent metallopeptidase HflB [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 678

 Score = 40.0 bits (92), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E  V F S SG    +      A  +  L    +++   +
Sbjct: 209 VLLVGPPGTGKTLLAKAVAGEANVPFFSISGSEFVEMFVGMGASKVRDLFKQAKEKAPCI 268

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 269 VFIDEI 274


>gi|320032422|gb|EFW14375.1| cbxX protein [Coccidioides posadasii str. Silveira]
          Length = 1240

 Score = 40.0 bits (92), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 65/133 (48%), Gaps = 20/133 (15%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALD----HVLFVGPPGLGKTTLAQVVA- 75
           L+R + LEE   Q     ++K  ++  +++  +L+    +V+F G PG GKTT A++ A 
Sbjct: 169 LMRYQGLEEVKQQF---LDIKSKVDICESQGRSLNRERFNVVFQGNPGTGKTTFARLYAE 225

Query: 76  --RELGV----NFRSTSGPVIAKAGDLAALLTNLED-----RDVLFIDEIHRLSIIVEEI 124
               +GV     F+ T+G  +A  G   A    +ED       VLFIDE ++L+    E 
Sbjct: 226 FLHSVGVINSSYFKETAGIALAVKGAEGA-QDEVEDILNHNGGVLFIDEAYQLTAAYIEA 284

Query: 125 LYPAMEDFQLDLM 137
           L     DF L  M
Sbjct: 285 LGKQALDFLLKAM 297


>gi|319790868|ref|YP_004152508.1| aaa atpase central domain protein [Variovorax paradoxus EPS]
 gi|315593331|gb|ADU34397.1| AAA ATPase central domain protein [Variovorax paradoxus EPS]
          Length = 774

 Score = 40.0 bits (92), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 31/57 (54%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           T  +F+   E    L   + AA AR E   +VL  GPPG GKT LA+VVA+  G+  
Sbjct: 283 TPHDFSFVEEDAQMLVTLLRAAVARKEPGVNVLLYGPPGTGKTELAKVVAQAAGLEL 339


>gi|311893429|dbj|BAJ25846.1| ATP-dependent zinc metalloprotease ThFtsH8 [Eutrema salsugineum]
          Length = 693

 Score = 40.0 bits (92), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL +GPPG GKT LA+ +A E GV F S SG
Sbjct: 262 VLLIGPPGTGKTLLAKAIAGEAGVPFFSISG 292


>gi|293382699|ref|ZP_06628624.1| cell division protein FtsH [Enterococcus faecalis R712]
 gi|312908595|ref|ZP_07767537.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis DAPTO
           512]
 gi|291079859|gb|EFE17223.1| cell division protein FtsH [Enterococcus faecalis R712]
 gi|310625382|gb|EFQ08665.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis DAPTO
           512]
          Length = 726

 Score = 40.0 bits (92), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 231 VLLEGPPGTGKTLLAKAVAGEAGVPFYSISG 261


>gi|259416112|ref|ZP_05740032.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Silicibacter
           sp. TrichCH4B]
 gi|259347551|gb|EEW59328.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Silicibacter
           sp. TrichCH4B]
          Length = 778

 Score = 40.0 bits (92), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 71/161 (44%), Gaps = 23/161 (14%)

Query: 10  RNVSQEDADISLLRPRTLEEFT-GQVEACSNLKVFIEAAKAR----AEALDHVLFVGPPG 64
           +NVS++DA++      +L+    GQ  A   L   I+ A+A      + + + LF GP G
Sbjct: 454 KNVSKDDAEVLKDLEASLKRVVFGQDAAIDALSSAIKLARAGLREPEKPIGNYLFAGPTG 513

Query: 65  LGKTTLAQVVARELGVNF---------------RSTSGPVIAKAGDLAALLTNLEDRD-- 107
           +GKT +A+ +A  LGV                 R    P      D   LLT+  D+   
Sbjct: 514 VGKTEVAKQLADTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGVDQHPH 573

Query: 108 -VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSV 147
            VL +DEI +    V  IL   M++ QL    G   + R+V
Sbjct: 574 CVLLLDEIEKAHPDVFNILLQVMDNGQLTDHNGRTVNFRNV 614


>gi|313126645|ref|YP_004036915.1| ATPase AAA [Halogeometricum borinquense DSM 11551]
 gi|312293010|gb|ADQ67470.1| AAA family ATPase, CDC48 subfamily [Halogeometricum borinquense DSM
           11551]
          Length = 718

 Score = 40.0 bits (92), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 44/99 (44%), Gaps = 12/99 (12%)

Query: 4   REGLLSRNVSQ----EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH--- 56
           ++G +SR V+      D D       T E+  G  E    ++  IE   +  E   H   
Sbjct: 165 KQGTVSRVVTSVSGGGDGDSDKPTGVTYEDIGGLDEELDLVREMIELPLSEPEVFAHLGV 224

Query: 57  -----VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
                VL  GPPG GKT +A+ VA E+   F + SGP I
Sbjct: 225 DPPKGVLLHGPPGTGKTLIAKAVATEVDATFITISGPEI 263



 Score = 37.7 bits (86), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ +A E  VNF   +GP
Sbjct: 496 VLLHGPPGTGKTLLARAIAGESEVNFIHVAGP 527


>gi|224087194|ref|XP_002189153.1| PREDICTED: similar to lon peptidase 1, mitochondrial [Taeniopygia
           guttata]
          Length = 921

 Score = 40.0 bits (92), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 88/209 (42%), Gaps = 33/209 (15%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTT 69
             S+E+ +++  +    E+  G  +    +  FI  ++ R      +L F GPPG+GKT+
Sbjct: 441 KCSEENLELARAQEVLEEDHYGMDDVKKRILEFIAVSQLRGSTQGKILCFYGPPGVGKTS 500

Query: 70  LAQVVARELGVN-FRSTSGP--------------VIAKAGDLAALLTNLEDRD-VLFIDE 113
           +A+ +AR L    FR + G               V A  G +   L   +  + ++ IDE
Sbjct: 501 IARSIARALNREYFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLILIDE 560

Query: 114 IHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
           + ++        S  + E+L P      LD  +        V ++LS+   I        
Sbjct: 561 VDKIGRGYQGDPSSALLELLDPEQNSNFLDHYL-------DVPVDLSKVLFICTANVTET 613

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           +  PL+DR  + I ++ Y  E+   I +R
Sbjct: 614 IPEPLRDRMEV-INVSGYVAEEKLAIAER 641


>gi|195038301|ref|XP_001990598.1| GH18155 [Drosophila grimshawi]
 gi|193894794|gb|EDV93660.1| GH18155 [Drosophila grimshawi]
          Length = 607

 Score = 40.0 bits (92), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108
           VL VGPPG GKT LA+ VA E G  F + S   +     G+   L      +        
Sbjct: 364 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPST 423

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 424 IFIDEIDAL 432


>gi|123968548|ref|YP_001009406.1| cell division protein FtsH4 [Prochlorococcus marinus str. AS9601]
 gi|123198658|gb|ABM70299.1| cell division protein FtsH4 [Prochlorococcus marinus str. AS9601]
          Length = 584

 Score = 40.0 bits (92), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL +GPPG GKT LA+ +A E GV F S S        V   A  +  L +  +++   +
Sbjct: 170 VLLIGPPGTGKTLLAKAIAGESGVPFLSISASEFVELFVGVGASRVRDLFSKAKEKSPCI 229

Query: 109 LFIDEIHRL 117
           +FIDEI  +
Sbjct: 230 IFIDEIDSI 238


>gi|159043936|ref|YP_001532730.1| ATP-dependent protease ATP-binding subunit ClpX [Dinoroseobacter
           shibae DFL 12]
 gi|189044133|sp|A8LJA7|CLPX_DINSH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|157911696|gb|ABV93129.1| ATP-dependent Clp protease [Dinoroseobacter shibae DFL 12]
          Length = 419

 Score = 40.0 bits (92), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 20/92 (21%)

Query: 41  KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALL 100
           K  IE AK+      ++L +GP G GKT LAQ +AR L V F       + +AG +   +
Sbjct: 102 KTDIELAKS------NILLIGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDV 155

Query: 101 TNL--------------EDRDVLFIDEIHRLS 118
            N+                R +++IDE+ +++
Sbjct: 156 ENIILKLLQASEYNVERAQRGIVYIDEVDKIT 187


>gi|114771110|ref|ZP_01448550.1| ATP-dependent protease ATP-binding subunit [alpha proteobacterium
           HTCC2255]
 gi|114548392|gb|EAU51278.1| ATP-dependent protease ATP-binding subunit [alpha proteobacterium
           HTCC2255]
          Length = 420

 Score = 40.0 bits (92), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L VGP G GKT LAQ +AR + V F       + +AG +   + N+            
Sbjct: 113 NILLVGPTGCGKTLLAQTLARVIDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNV 172

Query: 104 --EDRDVLFIDEIHRLS 118
              +R +++IDE+ +++
Sbjct: 173 ERAERGIVYIDEVDKIT 189


>gi|49246397|gb|AAT58330.1| FtsH-like protein [Lophopyrum elongatum]
 gi|49246413|gb|AAT58338.1| FtsH-like protein [Triticum urartu]
 gi|49246429|gb|AAT58346.1| FtsH-like protein [Triticum urartu]
 gi|49246431|gb|AAT58347.1| FtsH-like protein [Aegilops tauschii]
 gi|49246433|gb|AAT58348.1| FtsH-like protein [Hordeum vulgare subsp. spontaneum]
 gi|49246447|gb|AAT58355.1| FtsH-like protein [Triticum monococcum]
 gi|49246449|gb|AAT58356.1| FtsH-like protein [Triticum monococcum]
 gi|49246453|gb|AAT58358.1| FtsH-like protein [Aegilops tauschii]
 gi|49246459|gb|AAT58361.1| FtsH-like protein [Aegilops tauschii]
          Length = 151

 Score = 40.0 bits (92), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
          VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 57 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 87


>gi|49246405|gb|AAT58334.1| FtsH-like protein [Triticum urartu]
 gi|49246419|gb|AAT58341.1| FtsH-like protein [Aegilops tauschii]
 gi|49246423|gb|AAT58343.1| FtsH-like protein [Hordeum vulgare subsp. spontaneum]
 gi|49246425|gb|AAT58344.1| FtsH-like protein [Hordeum vulgare subsp. spontaneum]
 gi|49246437|gb|AAT58350.1| FtsH-like protein [Triticum urartu]
 gi|49246441|gb|AAT58352.1| FtsH-like protein [Triticum urartu]
 gi|49246443|gb|AAT58353.1| FtsH-like protein [Hordeum vulgare subsp. spontaneum]
 gi|49246445|gb|AAT58354.1| FtsH-like protein [Triticum urartu]
 gi|49246451|gb|AAT58357.1| FtsH-like protein [Aegilops tauschii]
 gi|49246455|gb|AAT58359.1| FtsH-like protein [Hordeum vulgare subsp. spontaneum]
          Length = 150

 Score = 40.0 bits (92), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
          VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 56 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 86


>gi|58336617|ref|YP_193202.1| cell division protein [Lactobacillus acidophilus NCFM]
 gi|58253934|gb|AAV42171.1| cell division protein [Lactobacillus acidophilus NCFM]
          Length = 718

 Score = 40.0 bits (92), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108
           VL  GPPG GKT LA+ VA E  V F S SG       V   A  +  L +N +     +
Sbjct: 229 VLLEGPPGTGKTLLARAVAGEANVPFYSISGSDFVEMFVGVGASRVRDLFSNAKKNAPSI 288

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 289 IFIDEI 294


>gi|55377649|ref|YP_135499.1| cell division control protein 48 [Haloarcula marismortui ATCC
           43049]
 gi|55230374|gb|AAV45793.1| cell division control protein 48 [Haloarcula marismortui ATCC
           43049]
          Length = 705

 Score = 40.0 bits (92), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           +L  GPPG GKT LA+ VA E  VNF   +GP I     G+    +  L +R       +
Sbjct: 488 ILLYGPPGTGKTLLARAVAGESDVNFIHVAGPEIMDRYVGESEEAVRELFERARQTAPSI 547

Query: 109 LFIDEIHRLS 118
           +F+DEI  ++
Sbjct: 548 IFLDEIDAIA 557



 Score = 38.5 bits (88), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA---KAGDLAALLTNLEDRD-----V 108
           VL  GPPG GKT +A+ VA E+   F + SGP I    K      L    E  +     +
Sbjct: 231 VLLHGPPGTGKTLIARAVANEVDAYFDTISGPEIVSKYKGESEERLREAFEKAEANAPAI 290

Query: 109 LFIDEIHRLS 118
           LF+DEI  ++
Sbjct: 291 LFVDEIDSIA 300


>gi|72163294|ref|YP_290951.1| Mername-AA223 peptidase [Thermobifida fusca YX]
 gi|71917026|gb|AAZ56928.1| Mername-AA223 peptidase. Metallo peptidase. MEROPS family M41
           [Thermobifida fusca YX]
          Length = 682

 Score = 40.0 bits (92), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 200 VLLYGPPGTGKTLLARAVAGEAGVPFYSISG 230


>gi|29374906|ref|NP_814059.1| cell division protein FtsH [Enterococcus faecalis V583]
 gi|256618325|ref|ZP_05475171.1| peptidase M41 [Enterococcus faecalis ATCC 4200]
 gi|256855219|ref|ZP_05560580.1| cell division protein FtsH [Enterococcus faecalis T8]
 gi|257081552|ref|ZP_05575913.1| peptidase M41 [Enterococcus faecalis E1Sol]
 gi|257084200|ref|ZP_05578561.1| cell division protein FtsH [Enterococcus faecalis Fly1]
 gi|257088027|ref|ZP_05582388.1| peptidase M41 [Enterococcus faecalis D6]
 gi|257417630|ref|ZP_05594624.1| peptidase M41 [Enterococcus faecalis AR01/DG]
 gi|257418645|ref|ZP_05595639.1| peptidase M41 [Enterococcus faecalis T11]
 gi|29342364|gb|AAO80130.1| cell division protein FtsH [Enterococcus faecalis V583]
 gi|256597852|gb|EEU17028.1| peptidase M41 [Enterococcus faecalis ATCC 4200]
 gi|256709732|gb|EEU24779.1| cell division protein FtsH [Enterococcus faecalis T8]
 gi|256989582|gb|EEU76884.1| peptidase M41 [Enterococcus faecalis E1Sol]
 gi|256992230|gb|EEU79532.1| cell division protein FtsH [Enterococcus faecalis Fly1]
 gi|256996057|gb|EEU83359.1| peptidase M41 [Enterococcus faecalis D6]
 gi|257159458|gb|EEU89418.1| peptidase M41 [Enterococcus faecalis ARO1/DG]
 gi|257160473|gb|EEU90433.1| peptidase M41 [Enterococcus faecalis T11]
          Length = 718

 Score = 40.0 bits (92), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 223 VLLEGPPGTGKTLLAKAVAGEAGVPFYSISG 253


>gi|20807813|ref|NP_622984.1| ATPase of the AAA+ class [Thermoanaerobacter tengcongensis MB4]
 gi|20516372|gb|AAM24588.1| ATPases of the AAA+ class [Thermoanaerobacter tengcongensis MB4]
          Length = 298

 Score = 40.0 bits (92), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 72/283 (25%), Positives = 120/283 (42%), Gaps = 65/283 (22%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALD------HVLFVGPPGLGKTTLAQV 73
           SL+    ++E   ++ A S L++     K + E L       H++F G PG GKTT+A++
Sbjct: 43  SLIGLHKVKEIIYEIYAFSQLQM-----KRKKEGLATDPIVLHMIFKGNPGTGKTTVARI 97

Query: 74  VAREL-GVNFRSTSGPVIAKAGDLAA---------LLTNLEDR--DVLFIDEIHRLSIIV 121
           + + L G+        V  +  DL           +  N++     +LF+DE + L+   
Sbjct: 98  LGKLLKGIGVLEKGHVVEVERADLVGEYIGHTAHRVRENVKKALGGILFVDEAYSLA--- 154

Query: 122 EEILYPAMEDF---QLDLMVGEGPSARSVKINLSRFTLIAATTRVG----LLTNP-LQDR 173
                   +DF    +D +V E    R      ++F LI A  +      L TNP L+ R
Sbjct: 155 ----RGGEKDFGKEAIDTLVKEMEDNR------NKFILILAGYKYEMEYFLNTNPGLRSR 204

Query: 174 FGIPIRLNF--YEIEDLKTIVQRGAKLTGLAVTDEAACEI--------AMRSRGTPRIAG 223
           F  PI+++F  Y IE+L  I +   K     +T+ A  ++        A R  G  R+  
Sbjct: 205 F--PIQIDFPDYTIEELLQIAEVMVKNRQYKLTESAKRKLMKILIKNDASREMGNARM-- 260

Query: 224 RLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLR 266
                VR+  E A  K   R +    + +   D +  D +D+R
Sbjct: 261 -----VRNIIEKAIRKQAVRVLNKVNITKE--DLITIDSIDIR 296


>gi|332669078|ref|YP_004452086.1| ATP-dependent metalloprotease FtsH [Cellulomonas fimi ATCC 484]
 gi|332338116|gb|AEE44699.1| ATP-dependent metalloprotease FtsH [Cellulomonas fimi ATCC 484]
          Length = 684

 Score = 40.0 bits (92), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 42/80 (52%), Gaps = 7/80 (8%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFI-EAAKARA---EALDHVLFVGPPGLGK 67
           VS+E   ++      ++E    +E    +K F+ E AK +A   +    VL  GPPG GK
Sbjct: 158 VSKESPQVTFADVAGVDE---ALEELQEIKEFLSEPAKFQAVGAKIPKGVLLYGPPGTGK 214

Query: 68  TTLAQVVARELGVNFRSTSG 87
           T LA+ VA E GV F S SG
Sbjct: 215 TLLARAVAGEAGVPFYSISG 234


>gi|313139717|ref|ZP_07801910.1| AAA family ATPase [Bifidobacterium bifidum NCIMB 41171]
 gi|313132227|gb|EFR49844.1| AAA family ATPase [Bifidobacterium bifidum NCIMB 41171]
          Length = 420

 Score = 40.0 bits (92), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 51/118 (43%), Gaps = 20/118 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIE-----AAKARA---EALDHVLFVGPPGLGKT 68
           AD SL    T   F G     +  K  IE     +A+ RA   + +  V+F G PG GKT
Sbjct: 164 ADPSL----TFAAFGGYERVIARAKELIETQLGNSAQMRAIGAKPIKGVIFTGAPGTGKT 219

Query: 69  TLAQVVARELGVNFRSTSGPVIAK--AGDLAALL------TNLEDRDVLFIDEIHRLS 118
            LA+++A      F   SGP I     GD    L         + R ++F DEI  ++
Sbjct: 220 HLARIIANVADAQFYLVSGPTIVSKYVGDSEETLRMIFAAAQSDKRAIIFFDEIDSIA 277


>gi|291534756|emb|CBL07868.1| ATP-dependent metalloprotease FtsH [Roseburia intestinalis M50/1]
          Length = 604

 Score = 40.0 bits (92), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E  V F S SG    +      A  +  L    +++   +
Sbjct: 201 VLLVGPPGTGKTMLAKAVAGESNVPFFSMSGSEFVEMFVGMGASKVRDLFGQAKEKAPCI 260

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 261 VFIDEI 266


>gi|291518669|emb|CBK73890.1| endopeptidase Clp ATP-binding regulatory subunit (clpX)
           [Butyrivibrio fibrisolvens 16/4]
          Length = 428

 Score = 40.0 bits (92), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 29/130 (22%)

Query: 18  DISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEA----------LDHVLFVGP 62
           +I+L +P  ++ F      GQ EA   L V +     R  A            +VL +GP
Sbjct: 61  EINLQKPEDMKAFLDQYVIGQDEAKKVLSVAVYNHYKRIMANPDDIDVELQKSNVLMLGP 120

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL----------EDRDV 108
            G GKT LAQ +AR LGV F       + +AG    D+  +L  L           +  +
Sbjct: 121 TGSGKTLLAQTLARVLGVPFAIADATTLTEAGYVGEDVENILLKLIQAAEFDIKKAEIGI 180

Query: 109 LFIDEIHRLS 118
           ++IDEI +++
Sbjct: 181 VYIDEIDKIT 190


>gi|293388119|ref|ZP_06632646.1| cell division protein FtsH [Enterococcus faecalis S613]
 gi|312909257|ref|ZP_07768114.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis DAPTO
           516]
 gi|291082495|gb|EFE19458.1| cell division protein FtsH [Enterococcus faecalis S613]
 gi|311290499|gb|EFQ69055.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis DAPTO
           516]
          Length = 725

 Score = 40.0 bits (92), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 230 VLLEGPPGTGKTLLAKAVAGEAGVPFYSISG 260


>gi|281360138|ref|NP_001163522.1| katanin p60-like 1, isoform D [Drosophila melanogaster]
 gi|281360146|ref|NP_001163526.1| katanin p60-like 1, isoform H [Drosophila melanogaster]
 gi|272476827|gb|ACZ94821.1| katanin p60-like 1, isoform D [Drosophila melanogaster]
 gi|272476831|gb|ACZ94825.1| katanin p60-like 1, isoform H [Drosophila melanogaster]
          Length = 609

 Score = 40.0 bits (92), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108
           VL VGPPG GKT LA+ VA E G  F + S   +     G+   L      +        
Sbjct: 366 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPST 425

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 426 IFIDEIDAL 434


>gi|241764197|ref|ZP_04762231.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acidovorax
           delafieldii 2AN]
 gi|241366474|gb|EER60978.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acidovorax
           delafieldii 2AN]
          Length = 421

 Score = 40.0 bits (92), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+            
Sbjct: 117 NILLIGPTGSGKTLLAQTLARMLDVPFVMADATTLTEAGYVGEDVENIVQKLLQSCNYEV 176

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 177 ERAQRGIVYIDEIDKIS 193


>gi|294892167|ref|XP_002773928.1| cell division cycle protein 48, putative [Perkinsus marinus ATCC
           50983]
 gi|239879132|gb|EER05744.1| cell division cycle protein 48, putative [Perkinsus marinus ATCC
           50983]
          Length = 605

 Score = 40.0 bits (92), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLAALLTNLEDR------DV 108
           +L  GPPG  KT LA+ VA E  +NF S  GP +     GD  A + +L  +       V
Sbjct: 370 ILLYGPPGCSKTMLARAVATETEMNFISIKGPELFSKWVGDSEAKVRDLFRKARQAAPTV 429

Query: 109 LFIDEI 114
           +FIDE+
Sbjct: 430 VFIDEV 435


>gi|229546905|ref|ZP_04435630.1| cell division protein FtsH [Enterococcus faecalis TX1322]
 gi|229307833|gb|EEN73820.1| cell division protein FtsH [Enterococcus faecalis TX1322]
          Length = 726

 Score = 40.0 bits (92), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 231 VLLEGPPGTGKTLLAKAVAGEAGVPFYSISG 261


>gi|256833317|ref|YP_003162044.1| ATP-dependent metalloprotease FtsH [Jonesia denitrificans DSM
           20603]
 gi|256686848|gb|ACV09741.1| ATP-dependent metalloprotease FtsH [Jonesia denitrificans DSM
           20603]
          Length = 677

 Score = 40.0 bits (92), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 4/58 (6%)

Query: 34  VEACSNLKVFI-EAAKARA---EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VE    +K F+ E AK +A   +    VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 176 VEELREIKEFLSEPAKFQAVGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISG 233


>gi|227486248|ref|ZP_03916564.1| ATP dependent protease ATP-binding subunit [Anaerococcus
           lactolyticus ATCC 51172]
 gi|227235659|gb|EEI85674.1| ATP dependent protease ATP-binding subunit [Anaerococcus
           lactolyticus ATCC 51172]
          Length = 404

 Score = 40.0 bits (92), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 59/132 (44%), Gaps = 29/132 (21%)

Query: 16  DADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEALD----------HVLFV 60
           D D  L +P+ ++ +      GQ +A   L V +     R  + +          ++L +
Sbjct: 55  DFDFKLSKPKDIKAYLDSYVIGQEDAKKTLSVAVYNHYKRITSNEDDSEVELQKSNILML 114

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRD------ 107
           GP G GKT LAQ +AR+L V F       + +AG +   + N+        D D      
Sbjct: 115 GPTGSGKTLLAQTLARKLNVPFAIADATSLTEAGYVGEDVENIILKLVQAADYDIEAAEL 174

Query: 108 -VLFIDEIHRLS 118
            ++++DEI +++
Sbjct: 175 GIIYVDEIDKIT 186


>gi|240146417|ref|ZP_04745018.1| cell division protein FtsH [Roseburia intestinalis L1-82]
 gi|257201465|gb|EEU99749.1| cell division protein FtsH [Roseburia intestinalis L1-82]
          Length = 604

 Score = 40.0 bits (92), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E  V F S SG    +      A  +  L    +++   +
Sbjct: 201 VLLVGPPGTGKTMLAKAVAGESNVPFFSMSGSEFVEMFVGMGASKVRDLFGQAKEKAPCI 260

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 261 VFIDEI 266


>gi|225627582|ref|ZP_03785619.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella ceti
           str. Cudo]
 gi|254706706|ref|ZP_05168534.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella
           pinnipedialis M163/99/10]
 gi|254710186|ref|ZP_05171997.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella
           pinnipedialis B2/94]
 gi|254714184|ref|ZP_05175995.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella ceti
           M644/93/1]
 gi|254717619|ref|ZP_05179430.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella ceti
           M13/05/1]
 gi|256031680|ref|ZP_05445294.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella
           pinnipedialis M292/94/1]
 gi|256159836|ref|ZP_05457569.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella ceti
           M490/95/1]
 gi|256255082|ref|ZP_05460618.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella ceti
           B1/94]
 gi|260168814|ref|ZP_05755625.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella sp.
           F5/99]
 gi|261219455|ref|ZP_05933736.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella ceti
           M13/05/1]
 gi|261222275|ref|ZP_05936556.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella ceti
           B1/94]
 gi|261314168|ref|ZP_05953365.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
           pinnipedialis M163/99/10]
 gi|261317743|ref|ZP_05956940.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
           pinnipedialis B2/94]
 gi|261321951|ref|ZP_05961148.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella ceti
           M644/93/1]
 gi|261758299|ref|ZP_06002008.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella sp.
           F5/99]
 gi|265988774|ref|ZP_06101331.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
           pinnipedialis M292/94/1]
 gi|265998239|ref|ZP_06110796.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella ceti
           M490/95/1]
 gi|225617587|gb|EEH14632.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella ceti
           str. Cudo]
 gi|260920859|gb|EEX87512.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella ceti
           B1/94]
 gi|260924544|gb|EEX91112.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella ceti
           M13/05/1]
 gi|261294641|gb|EEX98137.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella ceti
           M644/93/1]
 gi|261296966|gb|EEY00463.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
           pinnipedialis B2/94]
 gi|261303194|gb|EEY06691.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
           pinnipedialis M163/99/10]
 gi|261738283|gb|EEY26279.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella sp.
           F5/99]
 gi|262552707|gb|EEZ08697.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella ceti
           M490/95/1]
 gi|264660971|gb|EEZ31232.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
           pinnipedialis M292/94/1]
          Length = 424

 Score = 40.0 bits (92), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L VGP G GKT LAQ +AR + V F       + +AG +   + N+         
Sbjct: 112 AKSNILLVGPTGCGKTYLAQTLARIIDVPFIMADATTLTEAGYVGEDVENIILKLLQAAD 171

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDE+ ++S
Sbjct: 172 YNVERAQRGIVYIDEVDKIS 191


>gi|242012194|ref|XP_002426820.1| ATP-dependent metalloprotease, putative [Pediculus humanus
           corporis]
 gi|212511027|gb|EEB14082.1| ATP-dependent metalloprotease, putative [Pediculus humanus
           corporis]
          Length = 559

 Score = 40.0 bits (92), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 35/70 (50%), Gaps = 7/70 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA--RAEAL-----DHVLFVGPPGLGKTTLAQVVAREL 78
           T E+  G  EA   LK  +E  K   +  AL       VL VGPPG GKT LA+ VA E 
Sbjct: 107 TFEDVKGVDEAKQELKEVVEFLKNPNKFSALGGKLPKGVLLVGPPGTGKTLLARAVAGEA 166

Query: 79  GVNFRSTSGP 88
            V F   +GP
Sbjct: 167 RVPFFHAAGP 176


>gi|154484850|ref|ZP_02027298.1| hypothetical protein EUBVEN_02568 [Eubacterium ventriosum ATCC
           27560]
 gi|149733803|gb|EDM49922.1| hypothetical protein EUBVEN_02568 [Eubacterium ventriosum ATCC
           27560]
          Length = 604

 Score = 40.0 bits (92), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E  V F S SG    +      A  +  L    +++   +
Sbjct: 201 VLLVGPPGTGKTMLAKAVAGESNVPFFSMSGSEFVEMFVGMGASKVRDLFGQAKEKAPCI 260

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 261 VFIDEI 266


>gi|148642702|ref|YP_001273215.1| cell division protein CDC48 [Methanobrevibacter smithii ATCC 35061]
 gi|148551719|gb|ABQ86847.1| cell division control protein Cdc48, AAA+ ATPase family
           [Methanobrevibacter smithii ATCC 35061]
          Length = 730

 Score = 40.0 bits (92), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 52/124 (41%), Gaps = 24/124 (19%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
           + E+  G  +    ++  IE    R E  D         VL  GPPG GKT LA+ VA E
Sbjct: 201 SYEDIGGLKDEVKKVREMIEIPLKRPELFDKLGIAPPKGVLMHGPPGTGKTLLAKAVASE 260

Query: 78  LGVNFRSTSGPVIAK---AGDLAALLTNLEDRD-----VLFIDEIHRLSIIVEEILYPAM 129
              +F + +GP I      G    L    E+ +     ++FIDE+  ++        P  
Sbjct: 261 SDAHFIAINGPEIMSKYVGGSEENLREYFEEAEENAPSIIFIDELDAIA--------PKR 312

Query: 130 EDFQ 133
           ED Q
Sbjct: 313 EDTQ 316


>gi|125596557|gb|EAZ36337.1| hypothetical protein OsJ_20663 [Oryza sativa Japonica Group]
          Length = 937

 Score = 40.0 bits (92), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK-----AGDLAALLTNLEDR---DV 108
           +L  GPPG GKT LA+ +A E G NF S +G  +       A  L   L +   R    +
Sbjct: 685 ILLFGPPGTGKTLLAKALATEAGANFISITGSNLTSKWFGDAEKLTKALFSFASRLAPVI 744

Query: 109 LFIDEIHRL 117
           +F+DE+  L
Sbjct: 745 IFVDEVDSL 753


>gi|38606517|emb|CAE05991.3| OSJNBa0016O02.1 [Oryza sativa Japonica Group]
          Length = 584

 Score = 40.0 bits (92), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 29/53 (54%)

Query: 34  VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTS 86
           +E  S L   +   K  A+    VL VGPPG GKT LA+ VA E G+ F S S
Sbjct: 310 IEVVSCLHGSLNYKKLGAKLPRGVLLVGPPGTGKTLLARAVAGEAGIPFFSVS 362


>gi|21357333|ref|NP_649586.1| katanin p60-like 1, isoform A [Drosophila melanogaster]
 gi|281360142|ref|NP_001163524.1| katanin p60-like 1, isoform F [Drosophila melanogaster]
 gi|15291493|gb|AAK93015.1| GH23455p [Drosophila melanogaster]
 gi|23175931|gb|AAF51955.2| katanin p60-like 1, isoform A [Drosophila melanogaster]
 gi|220945628|gb|ACL85357.1| CG1193-PA [synthetic construct]
 gi|220955422|gb|ACL90254.1| CG1193-PA [synthetic construct]
 gi|272476829|gb|ACZ94823.1| katanin p60-like 1, isoform F [Drosophila melanogaster]
          Length = 605

 Score = 40.0 bits (92), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108
           VL VGPPG GKT LA+ VA E G  F + S   +     G+   L      +        
Sbjct: 362 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPST 421

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 422 IFIDEIDAL 430


>gi|28572441|ref|NP_789221.1| ATP-dependent protease ATP-binding subunit [Tropheryma whipplei
           TW08/27]
 gi|46576526|sp|Q83MI6|CLPX_TROW8 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|28410572|emb|CAD66959.1| ATP dependent Clp Protease ATP binding subunit [Tropheryma whipplei
           TW08/27]
          Length = 423

 Score = 40.0 bits (92), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA-----ALLTNLEDRD--- 107
           ++L +GP G GKT LAQ +AR L V F       + +AG +       LL  L+D D   
Sbjct: 120 NILLIGPTGCGKTYLAQTLARMLRVPFAVADATALTEAGYVGDDVENVLLKLLQDADFDI 179

Query: 108 ------VLFIDEIHRLS 118
                 ++ IDEI ++S
Sbjct: 180 TRAEAGIVCIDEIDKIS 196


>gi|86138022|ref|ZP_01056597.1| ATP-dependent Zn protease [Roseobacter sp. MED193]
 gi|85825049|gb|EAQ45249.1| ATP-dependent Zn protease [Roseobacter sp. MED193]
          Length = 703

 Score = 40.0 bits (92), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 48/108 (44%), Gaps = 16/108 (14%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKA-RAEALDH------VLFVGPPGLGKTTLAQVVA 75
            P  L +  G     S +K   +  +A RA  L+       VL  GPPG GKT  A  +A
Sbjct: 253 NPEALNQVKGLGPTSSPIKQLAQDMRAWRANELEWSEIPRGVLLSGPPGTGKTFTASKLA 312

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNL-----EDRD----VLFIDEI 114
             +G +F +TS     + G L   L  +     E RD    VLFIDEI
Sbjct: 313 EAVGGHFIATSYADWQREGHLGDFLAAMYRCFQEARDNAPSVLFIDEI 360


>gi|53723666|ref|YP_103111.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia
           mallei ATCC 23344]
 gi|67642017|ref|ZP_00440780.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           mallei GB8 horse 4]
 gi|121600417|ref|YP_993273.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia
           mallei SAVP1]
 gi|124383380|ref|YP_001029283.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia
           mallei NCTC 10229]
 gi|126448291|ref|YP_001080783.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia
           mallei NCTC 10247]
 gi|166998704|ref|ZP_02264558.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           mallei PRL-20]
 gi|254177862|ref|ZP_04884517.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           mallei ATCC 10399]
 gi|254200062|ref|ZP_04906428.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           mallei FMH]
 gi|254206397|ref|ZP_04912749.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           mallei JHU]
 gi|254358193|ref|ZP_04974466.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           mallei 2002721280]
 gi|61211429|sp|Q62JK8|CLPX_BURMA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|166214762|sp|A3MKJ7|CLPX_BURM7 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|166214763|sp|A2SBG4|CLPX_BURM9 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|166214764|sp|A1V4X0|CLPX_BURMS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|52427089|gb|AAU47682.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           mallei ATCC 23344]
 gi|121229227|gb|ABM51745.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           mallei SAVP1]
 gi|124291400|gb|ABN00669.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           mallei NCTC 10229]
 gi|126241161|gb|ABO04254.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           mallei NCTC 10247]
 gi|147749658|gb|EDK56732.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           mallei FMH]
 gi|147753840|gb|EDK60905.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           mallei JHU]
 gi|148027320|gb|EDK85341.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           mallei 2002721280]
 gi|160698901|gb|EDP88871.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           mallei ATCC 10399]
 gi|238523065|gb|EEP86506.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           mallei GB8 horse 4]
 gi|243065059|gb|EES47245.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           mallei PRL-20]
          Length = 423

 Score = 40.0 bits (92), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104
           ++L +GP G GKT LAQ +AR L V F       + +AG +          LL N     
Sbjct: 116 NILLIGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEV 175

Query: 105 ---DRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 176 EKAQRGIVYIDEIDKIS 192


>gi|12082995|gb|AAG48698.1|AF323913_1 intermembrane space AAA protease IAP-1 [Neurospora crassa]
 gi|12082997|gb|AAG48699.1|AF323914_1 intermembrane space AAA protease IAP-1 [Neurospora crassa]
 gi|21622385|emb|CAD37039.1| AAA protease IAP-1 (mitochondrial intermembrane space) [Neurospora
           crassa]
          Length = 738

 Score = 40.0 bits (92), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F + SG
Sbjct: 291 VLLVGPPGTGKTLLARAVAGEAGVPFFNMSG 321


>gi|299743241|ref|XP_001835627.2| ATPase [Coprinopsis cinerea okayama7#130]
 gi|298405567|gb|EAU86198.2| ATPase [Coprinopsis cinerea okayama7#130]
          Length = 360

 Score = 40.0 bits (92), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI-----AKAGDLAALLTNLEDR---DV 108
           VL  GPPG GKT +A+ +A+E G  F + +  V+      ++  L A L +L  +    +
Sbjct: 121 VLLFGPPGCGKTMMAKALAKESGATFINIAASVLTNKWYGESNKLVAGLFSLARKVQPSI 180

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 181 IFIDEI 186


>gi|295090291|emb|CBK76398.1| ATP-dependent metalloprotease FtsH [Clostridium cf. saccharolyticum
           K10]
          Length = 620

 Score = 40.0 bits (92), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 47/105 (44%), Gaps = 15/105 (14%)

Query: 25  RTLEEFTGQVEACSNLKVFIE-------AAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +T  +  GQ EA   LK  ++        A+  A      L VGPPG GKT LA+ VA E
Sbjct: 167 KTFADVAGQEEAKDALKEIVDFLHNPGKYAEIGATLPKGALLVGPPGTGKTLLAKAVAGE 226

Query: 78  LGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--VLFIDEI 114
             V F S SG    +      A  +  L     ++   ++FIDEI
Sbjct: 227 AHVPFFSISGSEFVEMFVGMGAAKVRDLFKQANEKAPCIVFIDEI 271


>gi|257088704|ref|ZP_05583065.1| peptidase M41 [Enterococcus faecalis CH188]
 gi|256997516|gb|EEU84036.1| peptidase M41 [Enterococcus faecalis CH188]
          Length = 718

 Score = 40.0 bits (92), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 223 VLLEGPPGTGKTLLAKAVAGEAGVPFYSISG 253


>gi|229550494|ref|ZP_04439219.1| cell division protein FtsH [Enterococcus faecalis ATCC 29200]
 gi|307286956|ref|ZP_07567031.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0109]
 gi|312901063|ref|ZP_07760352.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0470]
 gi|229304351|gb|EEN70347.1| cell division protein FtsH [Enterococcus faecalis ATCC 29200]
 gi|306501902|gb|EFM71191.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0109]
 gi|311291809|gb|EFQ70365.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0470]
 gi|315026777|gb|EFT38709.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX2137]
 gi|315028816|gb|EFT40748.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX4000]
 gi|315147113|gb|EFT91129.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX4244]
 gi|315165843|gb|EFU09860.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX1302]
 gi|315171402|gb|EFU15419.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX1342]
 gi|315172635|gb|EFU16652.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX1346]
 gi|315582079|gb|EFU94270.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0309A]
          Length = 726

 Score = 40.0 bits (92), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 231 VLLEGPPGTGKTLLAKAVAGEAGVPFYSISG 261


>gi|227520050|ref|ZP_03950099.1| cell division protein FtsH [Enterococcus faecalis TX0104]
 gi|227555911|ref|ZP_03985958.1| cell division protein FtsH [Enterococcus faecalis HH22]
 gi|307276454|ref|ZP_07557577.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX2134]
 gi|307278664|ref|ZP_07559734.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0860]
 gi|227072598|gb|EEI10561.1| cell division protein FtsH [Enterococcus faecalis TX0104]
 gi|227174968|gb|EEI55940.1| cell division protein FtsH [Enterococcus faecalis HH22]
 gi|306504724|gb|EFM73924.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0860]
 gi|306506934|gb|EFM76081.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX2134]
 gi|315151134|gb|EFT95150.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0012]
 gi|315168158|gb|EFU12175.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX1341]
 gi|315573573|gb|EFU85764.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0309B]
          Length = 725

 Score = 40.0 bits (92), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 230 VLLEGPPGTGKTLLAKAVAGEAGVPFYSISG 260


>gi|224282562|ref|ZP_03645884.1| Vesicle-fusing ATPase [Bifidobacterium bifidum NCIMB 41171]
 gi|310287024|ref|YP_003938282.1| ATPase family associated with various cellular activities (AAA)
           [Bifidobacterium bifidum S17]
 gi|309250960|gb|ADO52708.1| ATPase family associated with various cellular activities (AAA)
           [Bifidobacterium bifidum S17]
          Length = 402

 Score = 40.0 bits (92), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 51/118 (43%), Gaps = 20/118 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIE-----AAKARA---EALDHVLFVGPPGLGKT 68
           AD SL    T   F G     +  K  IE     +A+ RA   + +  V+F G PG GKT
Sbjct: 146 ADPSL----TFAAFGGYERVIARAKELIETQLGNSAQMRAIGAKPIKGVIFTGAPGTGKT 201

Query: 69  TLAQVVARELGVNFRSTSGPVIAK--AGDLAALL------TNLEDRDVLFIDEIHRLS 118
            LA+++A      F   SGP I     GD    L         + R ++F DEI  ++
Sbjct: 202 HLARIIANVADAQFYLVSGPTIVSKYVGDSEETLRMIFAAAQSDKRAIIFFDEIDSIA 259


>gi|224025974|ref|ZP_03644340.1| hypothetical protein BACCOPRO_02725 [Bacteroides coprophilus DSM
           18228]
 gi|224019210|gb|EEF77208.1| hypothetical protein BACCOPRO_02725 [Bacteroides coprophilus DSM
           18228]
          Length = 386

 Score = 40.0 bits (92), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLT--------NL 103
           +++ VG  G GKT LA+ +A+ L V F      V+ +AG    D+ ++LT        N+
Sbjct: 86  NIIMVGSTGTGKTLLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQAADYNV 145

Query: 104 E--DRDVLFIDEIHRLS 118
           E  +R ++FIDEI +++
Sbjct: 146 EEAERGIVFIDEIDKIA 162


>gi|218134340|ref|ZP_03463144.1| hypothetical protein BACPEC_02233 [Bacteroides pectinophilus ATCC
           43243]
 gi|217989725|gb|EEC55736.1| hypothetical protein BACPEC_02233 [Bacteroides pectinophilus ATCC
           43243]
          Length = 476

 Score = 40.0 bits (92), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E  V F S SG    +      A  +  L    +++   +
Sbjct: 73  VLLVGPPGTGKTMLAKAVAGESNVPFFSMSGSEFVEMFVGMGASKVRDLFGQAKEKAPCI 132

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 133 VFIDEI 138


>gi|158292645|ref|XP_314028.3| AGAP005144-PA [Anopheles gambiae str. PEST]
 gi|157017089|gb|EAA09454.3| AGAP005144-PA [Anopheles gambiae str. PEST]
          Length = 327

 Score = 40.0 bits (92), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 5/68 (7%)

Query: 11 NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
          NV      +   RP  L +     E    +  FI     + E L H+LF GPPG GKT+ 
Sbjct: 4  NVKSNLPWVEKYRPAKLNDLISHEEIIGTINKFI-----KEEQLPHLLFYGPPGTGKTST 58

Query: 71 AQVVAREL 78
              AR+L
Sbjct: 59 ILACARQL 66


>gi|120601143|ref|YP_965543.1| response regulator receiver protein [Desulfovibrio vulgaris DP4]
 gi|120561372|gb|ABM27116.1| response regulator receiver protein [Desulfovibrio vulgaris DP4]
          Length = 682

 Score = 40.0 bits (92), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 87/221 (39%), Gaps = 53/221 (23%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF------------------RSTSGPVIAKAGDLAA 98
           + FVGPPG+GKT++ Q +A+ +   F                  R+ +G +  +   + A
Sbjct: 248 LCFVGPPGVGKTSVGQAIAKAMNRPFVRLSLADLRDEAELRGHRRTYAGAMPGRI--MQA 305

Query: 99  LLTNLEDRDVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN 150
           L T      V  +DE+ ++        ++ + E+L P   D  LD  V        +  +
Sbjct: 306 LRTAGVRNPVFMLDEMDKMGQDARSDPAMALLELLDPEQNDRFLDRYV-------DLPFD 358

Query: 151 LSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL----KTIVQRGAKLTGLAVTDE 206
           LS    IA       +  PL DR  +     + E E      + ++ R  +  GL     
Sbjct: 359 LSEVMFIATANDTSRMRGPLLDRLEVVPFAGYSEDEKADIASRFLLPRQLREHGLV---- 414

Query: 207 AACEIAMRSRGTPRIAGRLLRR-VRDFAEVAHAKTITREIA 246
                       P +A   LRR VRD+ + A  + + RE+A
Sbjct: 415 ---------HPRPVVADEALRRIVRDYTDEAGVRGLERELA 446


>gi|113953333|ref|YP_729587.1| cell division protein FtsH [Synechococcus sp. CC9311]
 gi|113880684|gb|ABI45642.1| cell division protein FtsH [Synechococcus sp. CC9311]
          Length = 617

 Score = 40.0 bits (92), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
            L VGPPG GKT LA+ VA E GV F S SG
Sbjct: 198 CLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 228


>gi|148652117|ref|YP_001279210.1| ATP-dependent protease ATP-binding subunit ClpX [Psychrobacter sp.
           PRwf-1]
 gi|172048458|sp|A5WC69|CLPX_PSYWF RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|148571201|gb|ABQ93260.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Psychrobacter
           sp. PRwf-1]
          Length = 425

 Score = 40.0 bits (92), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDV 108
           ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+        D DV
Sbjct: 128 NILLIGPTGSGKTLLAQTLARMLDVPFAMADATTLTEAGYVGEDVENIVQKLLQAADYDV 187

Query: 109 -------LFIDEIHRLS 118
                  +++DEI ++S
Sbjct: 188 EKAEQGIIYVDEIDKIS 204


>gi|10176992|dbj|BAB10224.1| unnamed protein product [Arabidopsis thaliana]
          Length = 469

 Score = 40.0 bits (92), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 2/93 (2%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           + P+  EE    + A SN K + +    +A    ++L+ GPPG GK+T+   +A  L  N
Sbjct: 210 MDPKKKEEIVNDLIAFSNGKEYYKKI-GKAWKRGYLLY-GPPGTGKSTMISAMANLLNYN 267

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEI 114
                   +    +L  LLT    + ++ I++I
Sbjct: 268 IYDLELTAVKNNSELKKLLTATSSKSIIVIEDI 300


>gi|89073231|ref|ZP_01159761.1| ATP-dependent protease ATP-binding subunit [Photobacterium sp.
           SKA34]
 gi|89050941|gb|EAR56405.1| ATP-dependent protease ATP-binding subunit [Photobacterium sp.
           SKA34]
          Length = 426

 Score = 40.0 bits (92), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LA+ +AR L V F       + +AG +   + N+            
Sbjct: 116 NILLIGPTGSGKTLLAETLARMLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 175

Query: 104 --EDRDVLFIDEIHRLS 118
              +R +++IDEI ++S
Sbjct: 176 AKAERGIVYIDEIDKIS 192


>gi|258568646|ref|XP_002585067.1| ribosome biogenesis ATPase RIX7 [Uncinocarpus reesii 1704]
 gi|237906513|gb|EEP80914.1| ribosome biogenesis ATPase RIX7 [Uncinocarpus reesii 1704]
          Length = 741

 Score = 40.0 bits (92), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 516 VLLWGPPGCGKTLLAKAVANESRANFISVKGP 547



 Score = 40.0 bits (92), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 20/34 (58%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL  GPPG GKT +A   A ELGV F S S P I
Sbjct: 211 VLLHGPPGCGKTLIANAFAAELGVPFISISAPSI 244


>gi|226355419|ref|YP_002785159.1| ATP-dependent protease La [Deinococcus deserti VCD115]
 gi|226317409|gb|ACO45405.1| putative ATP-dependent protease La [Deinococcus deserti VCD115]
          Length = 820

 Score = 40.0 bits (92), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 72/186 (38%), Gaps = 44/186 (23%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF------------------RSTSGPVIAKAGDLAA 98
           ++F GPPG+GKT++AQ +AR LG  +                  R+  G +  +   +  
Sbjct: 365 LVFTGPPGVGKTSIAQSIARALGRKYVRIALGGARDESDIRGHRRTYIGAMPGRL--IQG 422

Query: 99  LLTNLEDRDVLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKIN 150
           + T      V+ +DE+ +L    +        E+L PA      D  +G       V  +
Sbjct: 423 IRTAGTKNPVILLDEVDKLGTSYQGDPSSALLEVLDPAQNQHFTDHYLG-------VPFD 475

Query: 151 LSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL---------KTIVQRGAKLTGL 201
           LS    IA       +   L DR  +    ++ E E L         + + Q G K   +
Sbjct: 476 LSEVMFIATANYPEQIPPALMDRMEVIDFSSYIEQEKLEIAKRYLLPRQLTQNGLKPNQI 535

Query: 202 AVTDEA 207
           + TD A
Sbjct: 536 SFTDAA 541


>gi|167751542|ref|ZP_02423669.1| hypothetical protein EUBSIR_02543 [Eubacterium siraeum DSM 15702]
 gi|167655350|gb|EDR99479.1| hypothetical protein EUBSIR_02543 [Eubacterium siraeum DSM 15702]
          Length = 661

 Score = 40.0 bits (92), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           VL +GPPG GKT LA+ VA E  V F S SG    +   G  A+ + +L D+       +
Sbjct: 218 VLLLGPPGTGKTLLAKAVAGEANVPFFSISGSDFVEMFVGVGASRVRDLFDQAKKHTPSI 277

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 278 IFIDEI 283


>gi|119496141|ref|XP_001264844.1| AAA family ATPase/60S ribosome export protein Rix7, putative
           [Neosartorya fischeri NRRL 181]
 gi|119413006|gb|EAW22947.1| AAA family ATPase/60S ribosome export protein Rix7, putative
           [Neosartorya fischeri NRRL 181]
          Length = 736

 Score = 40.0 bits (92), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 513 VLLWGPPGCGKTLLAKAVANESRANFISVKGP 544



 Score = 38.9 bits (89), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 49/104 (47%), Gaps = 21/104 (20%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDL-AALLTNLEDRD-----V 108
           VL  GPPG GKT +A   A ELGV F   S P I    +G+   AL  + E+       +
Sbjct: 209 VLLHGPPGCGKTMIANAFAAELGVPFIPISAPSIVSGMSGESEKALREHFEEARRLAPCL 268

Query: 109 LFIDEIHRLSI------------IVEEILYPAMEDFQLDLMVGE 140
           +FIDEI  ++             IV ++L   M+D  LD   G+
Sbjct: 269 IFIDEIDAITPKRESAQREMEKRIVAQLLT-CMDDLALDKTDGK 311


>gi|90579277|ref|ZP_01235087.1| ATP-dependent protease ATP-binding subunit [Vibrio angustum S14]
 gi|90440110|gb|EAS65291.1| ATP-dependent protease ATP-binding subunit [Vibrio angustum S14]
          Length = 426

 Score = 40.0 bits (92), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LA+ +AR L V F       + +AG +   + N+            
Sbjct: 116 NILLIGPTGSGKTLLAETLARMLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 175

Query: 104 --EDRDVLFIDEIHRLS 118
              +R +++IDEI ++S
Sbjct: 176 AKAERGIVYIDEIDKIS 192


>gi|146302257|ref|YP_001196848.1| DNA polymerase III, subunits gamma and tau [Flavobacterium
           johnsoniae UW101]
 gi|146156675|gb|ABQ07529.1| DNA polymerase III, subunits gamma and tau [Flavobacterium
           johnsoniae UW101]
          Length = 361

 Score = 40.0 bits (92), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 93/237 (39%), Gaps = 57/237 (24%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV-- 80
           RP+T ++  GQ    + L   IE+    A AL   LF GP G+GKTT A+++AR++    
Sbjct: 12  RPQTFKDVVGQKAITNTLLNAIES-NHLASAL---LFTGPRGVGKTTCARILARKINQPG 67

Query: 81  ------NFRSTSGPVIAKAGDLAALLTNLEDR----------DVLFIDEIHRLSIIVEEI 124
                 +F      + A + +    + NL D+           V  IDE+H LS      
Sbjct: 68  YDDPTEDFAFNVFELDAASNNSVDDIRNLIDQVRIPPQTGQYKVYIIDEVHMLSSAA--- 124

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
                  F   L   E P   ++ I       +A T +  +L          P  L+  +
Sbjct: 125 -------FNAFLKTLEEPPKHAIFI-------LATTEKHKIL----------PTILSRCQ 160

Query: 185 IEDLKTIVQRGAK--------LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
           I D K I  + AK          G+   D+A   IA ++ G  R A  +  RV  + 
Sbjct: 161 IFDFKRITVKDAKEHLADVAESQGINFEDDALHIIAQKADGAMRDALSIFDRVVSYC 217


>gi|49246427|gb|AAT58345.1| FtsH-like protein [Hordeum vulgare subsp. spontaneum]
          Length = 153

 Score = 40.0 bits (92), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
          VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 57 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 87


>gi|46123299|ref|XP_386203.1| hypothetical protein FG06027.1 [Gibberella zeae PH-1]
          Length = 390

 Score = 40.0 bits (92), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP TL++ +G  +  + +  FIE  +     L H+L  GPPG GKT+    +AR +
Sbjct: 49 RPTTLDDVSGHQDILATINKFIEQNR-----LPHLLLYGPPGTGKTSTILALARRI 99


>gi|330470513|ref|YP_004408256.1| ATP-dependent metalloprotease FtsH [Verrucosispora maris AB-18-032]
 gi|328813484|gb|AEB47656.1| ATP-dependent metalloprotease FtsH [Verrucosispora maris AB-18-032]
          Length = 671

 Score = 40.0 bits (92), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 208 VLLFGPPGTGKTLLARAVAGEAGVPFYSISG 238


>gi|330817270|ref|YP_004360975.1| ATP-dependent protease ATP-binding subunit [Burkholderia gladioli
           BSR3]
 gi|327369663|gb|AEA61019.1| ATP-dependent protease ATP-binding subunit [Burkholderia gladioli
           BSR3]
          Length = 423

 Score = 40.0 bits (92), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104
           ++L +GP G GKT LAQ +AR L V F       + +AG +          LL N     
Sbjct: 116 NILLIGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEV 175

Query: 105 ---DRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 176 DKAQRGIVYIDEIDKIS 192


>gi|315652556|ref|ZP_07905537.1| cell division protein FtsH [Eubacterium saburreum DSM 3986]
 gi|315485185|gb|EFU75586.1| cell division protein FtsH [Eubacterium saburreum DSM 3986]
          Length = 603

 Score = 40.0 bits (92), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--V 108
           +L VGPPG GKT LA+ VA E  V F S SG    +      A  +  L    +++   +
Sbjct: 201 ILLVGPPGTGKTMLAKAVAGEANVPFFSMSGSEFVEMFVGMGASKVRDLFKQAKEKAPCI 260

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 261 VFIDEI 266


>gi|312796429|ref|YP_004029351.1| ATP-dependent endopeptidase clp ATP-binding subunit clpX
           [Burkholderia rhizoxinica HKI 454]
 gi|312168204|emb|CBW75207.1| ATP-dependent endopeptidase clp ATP-binding subunit clpX
           [Burkholderia rhizoxinica HKI 454]
          Length = 410

 Score = 40.0 bits (92), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104
           ++L +GP G GKT LAQ +AR L V F       + +AG +          LL N     
Sbjct: 116 NILLIGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEV 175

Query: 105 ---DRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 176 EKAQRGIVYIDEIDKIS 192


>gi|307135876|gb|ADN33742.1| ATP-dependent clp protease ATP-binding subunit clpx [Cucumis melo
           subsp. melo]
          Length = 571

 Score = 40.0 bits (92), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 23/119 (19%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           SL RP T + F  + +A  + KV +E +        ++L +GP G GKT LA+ +AR + 
Sbjct: 194 SLQRP-TGDAFNNKADAADDDKVELEKS--------NILLMGPTGSGKTLLAKTLARFVN 244

Query: 80  VNFRSTSGPVIAKAG----DLAALLTNL----------EDRDVLFIDEIHRLSIIVEEI 124
           V F       + +AG    D+ ++L  L            + +++IDE+ +++   E +
Sbjct: 245 VPFVIADATTLTQAGYVGEDVESILYKLLMVADYNVAAAQQGIVYIDEVDKITKKAESL 303


>gi|312904626|ref|ZP_07763781.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0635]
 gi|310631978|gb|EFQ15261.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0635]
 gi|315036602|gb|EFT48534.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0027]
 gi|315153551|gb|EFT97567.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0031]
 gi|315158586|gb|EFU02603.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0312]
 gi|329577260|gb|EGG58724.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX1467]
          Length = 726

 Score = 40.0 bits (92), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 231 VLLEGPPGTGKTLLAKAVAGEAGVPFYSISG 261


>gi|307268518|ref|ZP_07549893.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX4248]
 gi|312952665|ref|ZP_07771529.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0102]
 gi|306515179|gb|EFM83719.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX4248]
 gi|310629453|gb|EFQ12736.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0102]
 gi|315032985|gb|EFT44917.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0017]
 gi|315145395|gb|EFT89411.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX2141]
 gi|315156269|gb|EFU00286.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0043]
 gi|315160785|gb|EFU04802.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0645]
 gi|315579384|gb|EFU91575.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0630]
 gi|327534062|gb|AEA92896.1| cell division protein FtsH [Enterococcus faecalis OG1RF]
          Length = 725

 Score = 40.0 bits (92), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 230 VLLEGPPGTGKTLLAKAVAGEAGVPFYSISG 260


>gi|302907531|ref|XP_003049666.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256730602|gb|EEU43953.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 825

 Score = 40.0 bits (92), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F   SG       V   A  +  L T  + +   +
Sbjct: 379 VLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEIFVGVGAKRVRELFTAAKSKSPAI 438

Query: 109 LFIDEI 114
           +FIDE+
Sbjct: 439 VFIDEL 444


>gi|303316103|ref|XP_003068056.1| ATPase, AAA family protein [Coccidioides posadasii C735 delta
           SOWgp]
 gi|240107732|gb|EER25911.1| ATPase, AAA family protein [Coccidioides posadasii C735 delta
           SOWgp]
          Length = 1240

 Score = 40.0 bits (92), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 65/133 (48%), Gaps = 20/133 (15%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALD----HVLFVGPPGLGKTTLAQVVA- 75
           L+R + LEE   Q     ++K  ++  +++  +L+    +V+F G PG GKTT A++ A 
Sbjct: 169 LMRYQGLEEVKQQF---LDIKSKVDICESQGRSLNRERFNVVFQGNPGTGKTTFARLYAE 225

Query: 76  --RELGV----NFRSTSGPVIAKAGDLAALLTNLED-----RDVLFIDEIHRLSIIVEEI 124
               +GV     F+ T+G  +A  G   A    +ED       VLFIDE ++L+    E 
Sbjct: 226 FLHSVGVINSSYFKETAGIALAVKGAEGA-QDEVEDILNHNGGVLFIDEAYQLTAAYIEA 284

Query: 125 LYPAMEDFQLDLM 137
           L     DF L  M
Sbjct: 285 LGKQALDFLLKAM 297


>gi|256956807|ref|ZP_05560978.1| peptidase M41 [Enterococcus faecalis DS5]
 gi|256964188|ref|ZP_05568359.1| peptidase M41 [Enterococcus faecalis HIP11704]
 gi|257421554|ref|ZP_05598544.1| cell division protein ftsH [Enterococcus faecalis X98]
 gi|294779309|ref|ZP_06744712.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis PC1.1]
 gi|300862072|ref|ZP_07108152.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TUSoD
           Ef11]
 gi|256947303|gb|EEU63935.1| peptidase M41 [Enterococcus faecalis DS5]
 gi|256954684|gb|EEU71316.1| peptidase M41 [Enterococcus faecalis HIP11704]
 gi|257163378|gb|EEU93338.1| cell division protein ftsH [Enterococcus faecalis X98]
 gi|294453595|gb|EFG21994.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis PC1.1]
 gi|295112550|emb|CBL31187.1| membrane protease FtsH catalytic subunit [Enterococcus sp. 7L76]
 gi|300848597|gb|EFK76354.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TUSoD
           Ef11]
 gi|323479478|gb|ADX78917.1| ATP-dependent metallopeptidase, cell division protease ftsH domain
           protein [Enterococcus faecalis 62]
          Length = 718

 Score = 40.0 bits (92), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 223 VLLEGPPGTGKTLLAKAVAGEAGVPFYSISG 253


>gi|296138295|ref|YP_003645538.1| ATP-dependent metalloprotease FtsH [Tsukamurella paurometabola DSM
           20162]
 gi|296026429|gb|ADG77199.1| ATP-dependent metalloprotease FtsH [Tsukamurella paurometabola DSM
           20162]
          Length = 801

 Score = 40.0 bits (92), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 33/59 (55%), Gaps = 6/59 (10%)

Query: 34  VEACSNLKVFIEAAKARAEAL-----DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VE    +K F++   AR +AL       VL  GPPG GKT LA+ VA E GV F + SG
Sbjct: 180 VEELYEIKDFLQNP-ARYQALGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISG 237


>gi|283798857|ref|ZP_06348010.1| cell division protein FtsH [Clostridium sp. M62/1]
 gi|291073395|gb|EFE10759.1| cell division protein FtsH [Clostridium sp. M62/1]
          Length = 620

 Score = 40.0 bits (92), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 47/105 (44%), Gaps = 15/105 (14%)

Query: 25  RTLEEFTGQVEACSNLKVFIE-------AAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +T  +  GQ EA   LK  ++        A+  A      L VGPPG GKT LA+ VA E
Sbjct: 167 KTFADVAGQEEAKDALKEIVDFLHNPGKYAEIGATLPKGALLVGPPGTGKTLLAKAVAGE 226

Query: 78  LGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--VLFIDEI 114
             V F S SG    +      A  +  L     ++   ++FIDEI
Sbjct: 227 AHVPFFSISGSEFVEMFVGMGAAKVRDLFKQANEKAPCIVFIDEI 271


>gi|168044124|ref|XP_001774532.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674087|gb|EDQ60600.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 630

 Score = 40.0 bits (92), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F + SG
Sbjct: 204 VLLVGPPGTGKTLLAKAIAGEAGVPFFAVSG 234


>gi|152991151|ref|YP_001356873.1| cell division protein FtsH [Nitratiruptor sp. SB155-2]
 gi|151423012|dbj|BAF70516.1| cell division protein FtsH [Nitratiruptor sp. SB155-2]
          Length = 660

 Score = 40.0 bits (92), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL------EDRDV 108
           VL VGPPG GKT LA+ VA E  V F + SG    +   G  AA + +L      E   +
Sbjct: 220 VLLVGPPGTGKTLLAKAVAGEADVPFFAVSGSSFIEMFVGVGAARVRDLFEQAKKEAPSI 279

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 280 IFIDEI 285


>gi|153004905|ref|YP_001379230.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter sp. Fw109-5]
 gi|152028478|gb|ABS26246.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter sp. Fw109-5]
          Length = 687

 Score = 40.0 bits (92), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 36/71 (50%), Gaps = 10/71 (14%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI---------AKAGDLAALLTNLEDRD 107
           VL VGPPG GKT LA+  A E GV F S SG            A+  DL A  T  +   
Sbjct: 232 VLLVGPPGTGKTLLARATAGEAGVPFFSLSGSEFVEMFVGVGAARVRDLFAQATQ-KAPC 290

Query: 108 VLFIDEIHRLS 118
           ++FIDE+  L 
Sbjct: 291 IVFIDELDALG 301


>gi|153005199|ref|YP_001379524.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter sp. Fw109-5]
 gi|152028772|gb|ABS26540.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter sp. Fw109-5]
          Length = 634

 Score = 40.0 bits (92), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL +GPPG GKT LA+ VA E GV F S SG    +   G  A+ + +L ++       +
Sbjct: 191 VLLMGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQGKKNAPCI 250

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 251 IFIDEI 256


>gi|49246395|gb|AAT58329.1| FtsH-like protein [Hordeum vulgare subsp. spontaneum]
 gi|49246409|gb|AAT58336.1| FtsH-like protein [Hordeum vulgare subsp. spontaneum]
 gi|49246411|gb|AAT58337.1| FtsH-like protein [Hordeum vulgare subsp. spontaneum]
 gi|49246415|gb|AAT58339.1| FtsH-like protein [Hordeum vulgare subsp. spontaneum]
          Length = 152

 Score = 40.0 bits (92), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
          VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 56 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 86


>gi|86561515|ref|NP_490816.4| related to yeast Vacuolar Protein Sorting factor family member
           (vps-4) [Caenorhabditis elegans]
 gi|145312333|gb|AAK29883.4| Related to yeast vacuolar protein sorting factor protein 4
           [Caenorhabditis elegans]
          Length = 430

 Score = 40.0 bits (92), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 47/201 (23%), Positives = 84/201 (41%), Gaps = 19/201 (9%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVN--FRSTSGPVIAKA-GDLAALLTNL------EDRD 107
           +L  GPPG GK+ +A+ VA E G +  F  +S  +++K  G+   L+ NL          
Sbjct: 154 ILLFGPPGTGKSYIAKAVATEAGESTFFSISSSDLMSKWLGESEKLVKNLFALAREHKPS 213

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           ++FIDEI  L     +    +    + + MV      + V +N     ++ AT    +L 
Sbjct: 214 IIFIDEIDSLCSARSDNESESARRIKTEFMV----QMQGVGLNNDGILVLGATNIPWILD 269

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPR------I 221
           + ++ RF   I +   +I   K + +         +TD+    +A R  G         +
Sbjct: 270 SAIRRRFEKRIYIPLPDIHARKEMFRIDVGKNYNTLTDQDFKVLAERCEGYSGYDISILV 329

Query: 222 AGRLLRRVRDFAEVAHAKTIT 242
              L++ VR      H K ++
Sbjct: 330 KDALMQPVRRVQSATHFKHVS 350


>gi|254252157|ref|ZP_04945475.1| ATP-dependent protease ATP-binding subunit [Burkholderia dolosa
           AUO158]
 gi|124894766|gb|EAY68646.1| ATP-dependent protease ATP-binding subunit [Burkholderia dolosa
           AUO158]
          Length = 423

 Score = 40.0 bits (92), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104
           ++L +GP G GKT LAQ +AR L V F       + +AG +          LL N     
Sbjct: 116 NILLIGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEV 175

Query: 105 ---DRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 176 EKAQRGIVYIDEIDKIS 192


>gi|78066692|ref|YP_369461.1| ATP-dependent protease ATP-binding subunit [Burkholderia sp. 383]
 gi|107028899|ref|YP_625994.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           cenocepacia AU 1054]
 gi|116689943|ref|YP_835566.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           cenocepacia HI2424]
 gi|170733281|ref|YP_001765228.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia
           cenocepacia MC0-3]
 gi|206560358|ref|YP_002231122.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia
           cenocepacia J2315]
 gi|122977698|sp|Q1BH84|CLPX_BURCA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|123756153|sp|Q39FE9|CLPX_BURS3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|166214761|sp|A0K846|CLPX_BURCH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238688580|sp|B1JTU9|CLPX_BURCC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238693098|sp|B4EBM2|CLPX_BURCJ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|77967437|gb|ABB08817.1| ClpX, ATPase regulatory subunit [Burkholderia sp. 383]
 gi|105898063|gb|ABF81021.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           cenocepacia AU 1054]
 gi|116648032|gb|ABK08673.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           cenocepacia HI2424]
 gi|169816523|gb|ACA91106.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           cenocepacia MC0-3]
 gi|198036399|emb|CAR52295.1| ATP-dependent Clp protease ATP-binding subunit [Burkholderia
           cenocepacia J2315]
 gi|325518992|gb|EGC98515.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia sp.
           TJI49]
          Length = 423

 Score = 40.0 bits (92), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104
           ++L +GP G GKT LAQ +AR L V F       + +AG +          LL N     
Sbjct: 116 NILLIGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEV 175

Query: 105 ---DRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 176 DKAQRGIVYIDEIDKIS 192


>gi|332283983|ref|YP_004415894.1| ATP-dependent protease ATP-binding subunit ClpX [Pusillimonas sp.
           T7-7]
 gi|330427936|gb|AEC19270.1| ATP-dependent protease ATP-binding subunit ClpX [Pusillimonas sp.
           T7-7]
          Length = 435

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104
           ++L +GP G GKT LAQ +AR L V F       + +AG +          LL N     
Sbjct: 115 NILLIGPTGSGKTLLAQTLARMLDVPFVMADATTLTEAGYVGEDVENIVQKLLQNCNYDV 174

Query: 105 ---DRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 175 DKAQRAIIYIDEIDKIS 191


>gi|327287589|ref|XP_003228511.1| PREDICTED: chromosome transmission fidelity protein 18 homolog
           [Anolis carolinensis]
          Length = 987

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 33/68 (48%), Gaps = 10/68 (14%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF--------RSTSG--PVIAKAGDLAALLTNLEDR 106
            L  GPPGLGKTTLA V+A+  G N         RS       I  A  + ++L   E  
Sbjct: 389 ALLCGPPGLGKTTLAHVIAKHAGYNVVEMNASDDRSPEAFKTRIEAATQMRSVLGANEKP 448

Query: 107 DVLFIDEI 114
           + L IDEI
Sbjct: 449 NCLVIDEI 456


>gi|315924139|ref|ZP_07920365.1| ATP-dependent Clp protease ATP-binding subunit [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315622541|gb|EFV02496.1| ATP-dependent Clp protease ATP-binding subunit [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 431

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +AR L V F       + +AG    D+  +L  L        
Sbjct: 113 NILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGEDVENILLKLLQAADMDI 172

Query: 104 --EDRDVLFIDEIHRLS 118
              ++ +++IDEI ++S
Sbjct: 173 ERAEKGIIYIDEIDKIS 189


>gi|307274229|ref|ZP_07555437.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0855]
 gi|306509191|gb|EFM78253.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0855]
          Length = 725

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 230 VLLEGPPGTGKTLLAKAVAGEAGVPFYSISG 260


>gi|296271397|ref|YP_003654029.1| ATP-dependent metalloprotease FtsH [Thermobispora bispora DSM
           43833]
 gi|296094184|gb|ADG90136.1| ATP-dependent metalloprotease FtsH [Thermobispora bispora DSM
           43833]
          Length = 679

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 204 VLLYGPPGTGKTLLARAVAGEAGVPFYSISG 234


>gi|296166815|ref|ZP_06849233.1| DNA polymerase III, gamma/tau subunit DnaX [Mycobacterium
          parascrofulaceum ATCC BAA-614]
 gi|295897831|gb|EFG77419.1| DNA polymerase III, gamma/tau subunit DnaX [Mycobacterium
          parascrofulaceum ATCC BAA-614]
          Length = 625

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 6/68 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
          RP T  E  GQ      L + +EA +     ++H  LF GP G GKT+ A+++AR L   
Sbjct: 23 RPATFAEVVGQEHVTEPLSIALEAGR-----INHAYLFSGPRGCGKTSSARILARSLNCV 77

Query: 82 FRSTSGPV 89
             T+ P 
Sbjct: 78 QGPTANPC 85


>gi|294852447|ref|ZP_06793120.1| ATP-dependent Clp protease [Brucella sp. NVSL 07-0026]
 gi|294821036|gb|EFG38035.1| ATP-dependent Clp protease [Brucella sp. NVSL 07-0026]
          Length = 424

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L VGP G GKT LAQ +AR + V F       + +AG +   + N+         
Sbjct: 112 AKSNILLVGPTGCGKTYLAQTLARIIDVPFIMADATTLTEAGYVGEDVENIILKLLQAAD 171

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDE+ ++S
Sbjct: 172 YNVERAQRGIVYIDEVDKIS 191


>gi|302895269|ref|XP_003046515.1| hypothetical protein NECHADRAFT_66291 [Nectria haematococca mpVI
           77-13-4]
 gi|256727442|gb|EEU40802.1| hypothetical protein NECHADRAFT_66291 [Nectria haematococca mpVI
           77-13-4]
          Length = 1120

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 72/179 (40%), Gaps = 37/179 (20%)

Query: 43  FIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNF------------------R 83
           FI   K R      +L FVGPPG+GKT++ + +AR L   +                  R
Sbjct: 587 FIAVGKLRGTVEGKILCFVGPPGVGKTSIGKSIARALNREYYRFSVGGLTDVAEIKGHRR 646

Query: 84  STSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL--------SIIVEEILYPAMEDFQLD 135
           +  G +  +   + AL     +  ++ IDEI ++        S  + E+L P      LD
Sbjct: 647 TYVGALPGRM--IQALKKCQTENPLILIDEIDKIGRGYQGDPSSALLELLDPEQNSSFLD 704

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
             +        V ++LS+   +        +  PL DR  I I L+ Y  ++   I QR
Sbjct: 705 HYM-------DVPVDLSKVLFVCTANMTDTIPRPLLDRMEI-ITLSGYVADEKMAIAQR 755


>gi|254701853|ref|ZP_05163681.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella suis bv.
           5 str. 513]
 gi|261752414|ref|ZP_05996123.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella suis
           bv. 5 str. 513]
 gi|261742167|gb|EEY30093.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella suis
           bv. 5 str. 513]
          Length = 424

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L VGP G GKT LAQ +AR + V F       + +AG +   + N+         
Sbjct: 112 AKSNILLVGPTGCGKTYLAQTLARIIDVPFIMADATTLTEAGYVGEDVENIILKLLQAAD 171

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDE+ ++S
Sbjct: 172 YNVERAQRGIVYIDEVDKIS 191


>gi|237714894|ref|ZP_04545375.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262406838|ref|ZP_06083387.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294647192|ref|ZP_06724791.1| ATPase family associated with various cellular activities (AAA)
           [Bacteroides ovatus SD CC 2a]
 gi|294809196|ref|ZP_06767912.1| ATPase family associated with various cellular activities (AAA)
           [Bacteroides xylanisolvens SD CC 1b]
 gi|229445219|gb|EEO51010.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262355541|gb|EEZ04632.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292637479|gb|EFF55898.1| ATPase family associated with various cellular activities (AAA)
           [Bacteroides ovatus SD CC 2a]
 gi|294443590|gb|EFG12341.1| ATPase family associated with various cellular activities (AAA)
           [Bacteroides xylanisolvens SD CC 1b]
          Length = 324

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 24/168 (14%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKAGDLAALLTNLEDR-------- 106
           HVL  G PG+ KT LA++ AR +  +F R    P +  +  L   + N++          
Sbjct: 48  HVLIEGVPGVAKTLLARLTARLIDADFSRVQFTPDLMPSDVLGTTVFNMKTNGFDFHQGP 107

Query: 107 ---DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
              D++ +DEI+R     +  L+  ME+ Q+ +   +G + R   +    +T++A    V
Sbjct: 108 IFADIVLVDEINRAPAKTQAALFEVMEERQISI---DGTTHRMGDL----YTILATQNPV 160

Query: 164 ---GLLTNPLQ--DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDE 206
              G    P    DRF + I +++  +E+   I++R      L   D+
Sbjct: 161 EQEGTYKLPEAQLDRFLMKITMDYPSLEEEVNILERHHTNAALVKLDD 208


>gi|168019251|ref|XP_001762158.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162686562|gb|EDQ72950.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 513

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 8/71 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           VL  GPPG  KT LA+  A E G+NF +  GP +     G+    + +L  R       +
Sbjct: 309 VLLYGPPGCSKTLLARACASEAGLNFIAVKGPELFSKWVGESEKAVQSLFARARTAAPSI 368

Query: 109 LFIDEIHRLSI 119
           +F DEI  L++
Sbjct: 369 VFFDEIDALAV 379



 Score = 36.6 bits (83), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GD----LAALLTNLEDR--DV 108
           +L  GPPG GK+TLA+  A E GV   + +GP +     G+    L A+ T  E+    V
Sbjct: 41  ILLYGPPGTGKSTLARAAACEAGVPLFAINGPDVVSQFYGESEEALRAVFTAAEEAAPSV 100

Query: 109 LFIDEI 114
           + IDE+
Sbjct: 101 VVIDEV 106


>gi|168023113|ref|XP_001764083.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162684822|gb|EDQ71222.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 802

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 48/108 (44%), Gaps = 9/108 (8%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH-VLFVGPPGLGKTTLAQVV 74
           DAD+       L +   ++E   +   + E  + R   +   +L  G PG GKT LA+ V
Sbjct: 330 DADVKFADVAGLGDIRKELEEIVDFFTYGEKYRRRGSKIPAGILLCGEPGTGKTLLAKAV 389

Query: 75  ARELGVNFRSTSGPVIAK------AGDLAALLTNLEDR--DVLFIDEI 114
           A E GVNF S S     +      A  + AL     +    V+FIDE+
Sbjct: 390 AGEAGVNFFSISASQFVEIYVGVGASRVRALYNEARENAPAVVFIDEL 437


>gi|156937754|ref|YP_001435550.1| TBP-interacting protein TIP49 [Ignicoccus hospitalis KIN4/I]
 gi|156566738|gb|ABU82143.1| TBP-interacting protein TIP49 [Ignicoccus hospitalis KIN4/I]
          Length = 450

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 27/50 (54%)

Query: 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
            GQ EA   L V  +  K    A   VL VGPPG GKT LA  +A+ELG
Sbjct: 42 LVGQEEAREALGVVAQMVKEGKMAGKGVLIVGPPGTGKTALAVGLAKELG 91


>gi|121702141|ref|XP_001269335.1| AAA family ATPase/60S ribosome export protein Rix7, putative
           [Aspergillus clavatus NRRL 1]
 gi|119397478|gb|EAW07909.1| AAA family ATPase/60S ribosome export protein Rix7, putative
           [Aspergillus clavatus NRRL 1]
          Length = 738

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 515 VLLWGPPGCGKTLLAKAVANESRANFISVKGP 546



 Score = 38.9 bits (89), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 49/104 (47%), Gaps = 21/104 (20%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDL-AALLTNLEDRD-----V 108
           VL  GPPG GKT +A   A ELG+ F   S P I    +G+   AL  + E+       +
Sbjct: 209 VLLHGPPGCGKTMIANAFAAELGIPFIPISAPSIVSGMSGESEKALREHFEEAKRIAPCL 268

Query: 109 LFIDEIHRLSI------------IVEEILYPAMEDFQLDLMVGE 140
           +FIDEI  ++             IV ++L   M+D  LD   G+
Sbjct: 269 IFIDEIDAITPKRESAQREMEKRIVAQLLT-CMDDLALDKTDGK 311


>gi|160880656|ref|YP_001559624.1| stage III sporulation protein AA [Clostridium phytofermentans ISDg]
 gi|160429322|gb|ABX42885.1| stage III sporulation protein AA [Clostridium phytofermentans ISDg]
          Length = 322

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 3/58 (5%)

Query: 30  FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
            + QV+ C+NL   +     R  ++ H L + PPG GKTTL + V R+L    + T G
Sbjct: 130 LSHQVKGCANL---VMPYILRDNSIYHTLIISPPGCGKTTLLRDVIRQLSDGEQDTKG 184


>gi|90410783|ref|ZP_01218798.1| ATP-dependent protease ATP-binding subunit [Photobacterium
           profundum 3TCK]
 gi|90328414|gb|EAS44712.1| ATP-dependent protease ATP-binding subunit [Photobacterium
           profundum 3TCK]
          Length = 426

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LA+ +AR L V F       + +AG +   + N+            
Sbjct: 116 NILLIGPTGSGKTLLAETLARMLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 175

Query: 104 --EDRDVLFIDEIHRLS 118
              +R +++IDEI ++S
Sbjct: 176 AKAERGIVYIDEIDKIS 192


>gi|281360140|ref|NP_001163523.1| katanin p60-like 1, isoform E [Drosophila melanogaster]
 gi|281360144|ref|NP_001163525.1| katanin p60-like 1, isoform G [Drosophila melanogaster]
 gi|68051715|gb|AAY85121.1| AT01259p [Drosophila melanogaster]
 gi|272476828|gb|ACZ94822.1| katanin p60-like 1, isoform E [Drosophila melanogaster]
 gi|272476830|gb|ACZ94824.1| katanin p60-like 1, isoform G [Drosophila melanogaster]
          Length = 673

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108
           VL VGPPG GKT LA+ VA E G  F + S   +     G+   L      +        
Sbjct: 430 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPST 489

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 490 IFIDEIDAL 498


>gi|49246439|gb|AAT58351.1| FtsH-like protein [Hordeum vulgare subsp. spontaneum]
          Length = 154

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
          VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 58 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 88


>gi|8132824|gb|AAF73407.1|AF230642_1 ClpX [Ehrlichia chaffeensis]
          Length = 443

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 18/95 (18%)

Query: 38  SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG--- 94
           SNL V  E   +++    +VL +GP G GKT LA+ +AR L + F       + +AG   
Sbjct: 94  SNLSVISEVEISKS----NVLLIGPTGSGKTLLARTLARVLQIPFAMADATTLTEAGYVG 149

Query: 95  -DLAALLTNL----------EDRDVLFIDEIHRLS 118
            D+  +L  L            R +++IDE+ ++S
Sbjct: 150 EDVENILLKLLQAANFNVDAAQRGIIYIDEVDKIS 184


>gi|50556774|ref|XP_505795.1| YALI0F23595p [Yarrowia lipolytica]
 gi|74632314|sp|Q6C0L7|LONP2_YARLI RecName: Full=Lon protease homolog 2, peroxisomal
 gi|49651665|emb|CAG78606.1| YALI0F23595p [Yarrowia lipolytica]
          Length = 952

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 18/30 (60%), Positives = 23/30 (76%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTS 86
           +L VGPPG+GKT+LA+ VAR LG  F+  S
Sbjct: 489 LLLVGPPGVGKTSLAKSVARALGRKFQRLS 518


>gi|17987158|ref|NP_539792.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella
           melitensis bv. 1 str. 16M]
 gi|62290023|ref|YP_221816.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella abortus
           bv. 1 str. 9-941]
 gi|82699950|ref|YP_414524.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella
           melitensis biovar Abortus 2308]
 gi|225852609|ref|YP_002732842.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella
           melitensis ATCC 23457]
 gi|237815532|ref|ZP_04594529.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella
           abortus str. 2308 A]
 gi|254689335|ref|ZP_05152589.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella abortus
           bv. 6 str. 870]
 gi|254693819|ref|ZP_05155647.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella abortus
           bv. 3 str. Tulya]
 gi|254697468|ref|ZP_05159296.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|254730365|ref|ZP_05188943.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella abortus
           bv. 4 str. 292]
 gi|256044766|ref|ZP_05447670.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|256061192|ref|ZP_05451344.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella neotomae
           5K33]
 gi|256257581|ref|ZP_05463117.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella abortus
           bv. 9 str. C68]
 gi|256263898|ref|ZP_05466430.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
           melitensis bv. 2 str. 63/9]
 gi|260565632|ref|ZP_05836116.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
           melitensis bv. 1 str. 16M]
 gi|260754851|ref|ZP_05867199.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
           abortus bv. 6 str. 870]
 gi|260758068|ref|ZP_05870416.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
           abortus bv. 4 str. 292]
 gi|260761892|ref|ZP_05874235.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|260883863|ref|ZP_05895477.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
           abortus bv. 9 str. C68]
 gi|261214102|ref|ZP_05928383.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
           abortus bv. 3 str. Tulya]
 gi|261325199|ref|ZP_05964396.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
           neotomae 5K33]
 gi|265991189|ref|ZP_06103746.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|297248423|ref|ZP_06932141.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella
           abortus bv. 5 str. B3196]
 gi|21263465|sp|Q8YHC7|CLPX_BRUME RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|68067919|sp|Q9L7X5|CLPX_BRUAB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|123727373|sp|Q2YPX2|CLPX_BRUA2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|254763837|sp|C0RJ80|CLPX_BRUMB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|17982824|gb|AAL52056.1| ATP-dependent clp protease ATP-binding subunit clpx [Brucella
           melitensis bv. 1 str. 16M]
 gi|62196155|gb|AAX74455.1| ClpX, ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Brucella abortus bv. 1 str. 9-941]
 gi|82616051|emb|CAJ11087.1| CbxX/CfqX superfamily:ATP/GTP-binding site motif A
           (P-loop):Bacterial chromosomal replication initiator
           protein, DnaA:AAA ATP [Brucella melitensis biovar
           Abortus 2308]
 gi|225640974|gb|ACO00888.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella
           melitensis ATCC 23457]
 gi|237788830|gb|EEP63041.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella
           abortus str. 2308 A]
 gi|260151700|gb|EEW86794.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
           melitensis bv. 1 str. 16M]
 gi|260668386|gb|EEX55326.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
           abortus bv. 4 str. 292]
 gi|260672324|gb|EEX59145.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|260674959|gb|EEX61780.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
           abortus bv. 6 str. 870]
 gi|260873391|gb|EEX80460.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
           abortus bv. 9 str. C68]
 gi|260915709|gb|EEX82570.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
           abortus bv. 3 str. Tulya]
 gi|261301179|gb|EEY04676.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
           neotomae 5K33]
 gi|263001973|gb|EEZ14548.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|263094030|gb|EEZ17964.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
           melitensis bv. 2 str. 63/9]
 gi|297175592|gb|EFH34939.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella
           abortus bv. 5 str. B3196]
 gi|326409128|gb|ADZ66193.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella
           melitensis M28]
 gi|326538836|gb|ADZ87051.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella
           melitensis M5-90]
          Length = 424

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L VGP G GKT LAQ +AR + V F       + +AG +   + N+         
Sbjct: 112 AKSNILLVGPTGCGKTYLAQTLARIIDVPFIMADATTLTEAGYVGEDVENIILKLLQAAD 171

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDE+ ++S
Sbjct: 172 YNVERAQRGIVYIDEVDKIS 191


>gi|119384011|ref|YP_915067.1| ATP-dependent protease ATP-binding subunit [Paracoccus
           denitrificans PD1222]
 gi|166214797|sp|A1B1H7|CLPX_PARDP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|119373778|gb|ABL69371.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Paracoccus
           denitrificans PD1222]
          Length = 421

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 20/92 (21%)

Query: 41  KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALL 100
           K  IE AK+      ++L +GP G GKT LAQ +AR L V F       + +AG +   +
Sbjct: 103 KTDIELAKS------NILLIGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDV 156

Query: 101 TNL--------------EDRDVLFIDEIHRLS 118
            N+                R +++IDE+ +++
Sbjct: 157 ENIILKLLQASEYNVERAQRGIVYIDEVDKIT 188


>gi|323139016|ref|ZP_08074076.1| AAA ATPase central domain protein [Methylocystis sp. ATCC 49242]
 gi|322395770|gb|EFX98311.1| AAA ATPase central domain protein [Methylocystis sp. ATCC 49242]
          Length = 254

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S SG
Sbjct: 193 VLLVGPPGTGKTLLARAIAGEAGVPFFSISG 223


>gi|312138052|ref|YP_004005388.1| cell division related ATP-dependent protease ftsh [Rhodococcus equi
           103S]
 gi|311887391|emb|CBH46703.1| cell division related ATP-dependent protease FtsH [Rhodococcus equi
           103S]
          Length = 777

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 33/59 (55%), Gaps = 6/59 (10%)

Query: 34  VEACSNLKVFIEAAKARAEAL-----DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VE    +K F++   AR +AL       VL  GPPG GKT LA+ VA E GV F + SG
Sbjct: 175 VEELYEIKDFLQN-PARYQALGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISG 232


>gi|289619587|emb|CBI53870.1| unnamed protein product [Sordaria macrospora]
          Length = 909

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 98/244 (40%), Gaps = 57/244 (23%)

Query: 44  IEAAKARAEALDH---------VLFVGPPGLGKTTLAQVVARELGVNFRSTS-------- 86
           ++A  A+ EAL +         +L VGPPG+GKT+LA+ VA  LG  F   S        
Sbjct: 437 VKAGGAKLEALKNRRMVDKSPILLLVGPPGVGKTSLARSVATALGRKFHRISLGGVRDEA 496

Query: 87  -------GPVIAKAGDLAALLTNLEDRDVLF-IDEIHRL---------SIIVEEILYPAM 129
                    V A  G +   L  +   + +F +DEI ++         S  + E+L P  
Sbjct: 497 EIRGHRRTYVAAMPGLVVQGLKKVGVANPVFLLDEIDKVGGSSIHGDPSAAMLEVLDPEQ 556

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED-- 187
                D  V       ++ I+LS+   IA    +  +  PL DR        +  +E   
Sbjct: 557 NHNFTDHYV-------NIPIDLSKVLFIATANSLDTIPAPLLDRMETIYIPGYTTLEKRH 609

Query: 188 --LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
             ++ +V +  ++ GL   DE+          TP +  ++   +  +   A  + + REI
Sbjct: 610 IAMQHLVPKQLRVNGL---DESQVSF------TPEVVSKI---IESYTREAGVRNLEREI 657

Query: 246 ADAA 249
           +  A
Sbjct: 658 SSVA 661


>gi|312194201|ref|YP_004014262.1| ATP-dependent metalloprotease FtsH [Frankia sp. EuI1c]
 gi|311225537|gb|ADP78392.1| ATP-dependent metalloprotease FtsH [Frankia sp. EuI1c]
          Length = 718

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 194 VLLYGPPGTGKTLLARAVAGEAGVPFYSISG 224


>gi|258648945|ref|ZP_05736414.1| lipoprotein releasing system, ATP-binding protein [Prevotella
           tannerae ATCC 51259]
 gi|260850540|gb|EEX70409.1| lipoprotein releasing system, ATP-binding protein [Prevotella
           tannerae ATCC 51259]
          Length = 217

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 11/77 (14%)

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAAL----LTNLEDRDVLFIDEIH 115
           VGP G GKTTL QV    LG  +R  +G ++    DL+AL    L    +  + FI + H
Sbjct: 33  VGPSGAGKTTLLQV----LGTLYRPDAGSILFNGTDLSALGKKALARFRNEHIGFIFQFH 88

Query: 116 RL---SIIVEEILYPAM 129
           +L      +E +  PA+
Sbjct: 89  QLLPEFTALENVFIPAL 105


>gi|257877910|ref|ZP_05657563.1| peptidase M41 [Enterococcus casseliflavus EC20]
 gi|257812076|gb|EEV40896.1| peptidase M41 [Enterococcus casseliflavus EC20]
          Length = 702

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 224 VLLEGPPGTGKTLLAKAVAGEAGVPFYSISG 254


>gi|197302420|ref|ZP_03167475.1| hypothetical protein RUMLAC_01148 [Ruminococcus lactaris ATCC
           29176]
 gi|197298318|gb|EDY32863.1| hypothetical protein RUMLAC_01148 [Ruminococcus lactaris ATCC
           29176]
          Length = 700

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 20/30 (66%), Positives = 21/30 (70%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           L VGPPG GKT LA+ VA E GV F S SG
Sbjct: 272 LLVGPPGTGKTLLAKAVAGEAGVPFFSLSG 301


>gi|195568563|ref|XP_002102283.1| GD19820 [Drosophila simulans]
 gi|194198210|gb|EDX11786.1| GD19820 [Drosophila simulans]
          Length = 668

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108
           VL VGPPG GKT LA+ VA E G  F + S   +     G+   L      +        
Sbjct: 425 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPST 484

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 485 IFIDEIDAL 493


>gi|167586933|ref|ZP_02379321.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           ubonensis Bu]
          Length = 423

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104
           ++L +GP G GKT LAQ +AR L V F       + +AG +          LL N     
Sbjct: 116 NILLIGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEV 175

Query: 105 ---DRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 176 EKAQRGIVYIDEIDKIS 192


>gi|161619060|ref|YP_001592947.1| ATP-dependent protease ATP-binding subunit [Brucella canis ATCC
           23365]
 gi|189082485|sp|A9M5C1|CLPX_BRUC2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|161335871|gb|ABX62176.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella
           canis ATCC 23365]
          Length = 424

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L VGP G GKT LAQ +AR + V F       + +AG +   + N+         
Sbjct: 112 AKSNILLVGPTGCGKTYLAQTLARIIDVPFIMADATTLTEAGYVGEDVENIILKLLQAAD 171

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDE+ ++S
Sbjct: 172 YNVERAQRGIVYIDEVDKIS 191


>gi|160880188|ref|YP_001559156.1| ATP-dependent metalloprotease FtsH [Clostridium phytofermentans
           ISDg]
 gi|310943128|sp|A9KIG5|FTSH_CLOPH RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|160428854|gb|ABX42417.1| ATP-dependent metalloprotease FtsH [Clostridium phytofermentans
           ISDg]
          Length = 577

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLE--DRDV 108
           V+  GPPG GKT +A+ +A E GV F + SG       V   A  +  L    +  ++ V
Sbjct: 182 VMLYGPPGTGKTLIAKAIATEAGVPFYAMSGSDFVQMYVGVGASRIRTLFNKAKKSEKAV 241

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 242 IFIDEI 247


>gi|157413381|ref|YP_001484247.1| cell division protein FtsH4 [Prochlorococcus marinus str. MIT 9215]
 gi|157387956|gb|ABV50661.1| cell division protein FtsH4 [Prochlorococcus marinus str. MIT 9215]
          Length = 584

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL +GPPG GKT LA+ +A E GV F S S        V   A  +  L +  +++   +
Sbjct: 170 VLLIGPPGTGKTLLAKAIAGESGVPFLSISASEFVELFVGVGASRVRDLFSKAKEKSPCI 229

Query: 109 LFIDEIHRL 117
           +FIDEI  +
Sbjct: 230 IFIDEIDSI 238


>gi|148560290|ref|YP_001259030.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella ovis ATCC
           25840]
 gi|166214760|sp|A5VQN3|CLPX_BRUO2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|148371547|gb|ABQ61526.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella ovis
           ATCC 25840]
          Length = 427

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L VGP G GKT LAQ +AR + V F       + +AG +   + N+         
Sbjct: 112 AKSNILLVGPTGCGKTYLAQTLARIIDVPFIMADATTLTEAGYVGEDVENIILKLLQAAD 171

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDE+ ++S
Sbjct: 172 YNVERAQRGIVYIDEVDKIS 191


>gi|118576833|ref|YP_876576.1| replication factor C/ATPase involved in DNA replication
           [Cenarchaeum symbiosum A]
 gi|118195354|gb|ABK78272.1| replication factor C/ATPase involved in DNA replication
           [Cenarchaeum symbiosum A]
          Length = 386

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 9/98 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG--- 79
           RPR +    G  EA + L  +    K   +    VL VGPPG GKTT+A + A+  G   
Sbjct: 8   RPRDIPSMVGNEEARAALSGWFSKWK---KGTKPVLLVGPPGTGKTTVANLAAKAHGYDV 64

Query: 80  VNFRSTSGPVIAKAGD-LAALLTNLE--DRDVLFIDEI 114
           ++  ++     ++  + L+ +L N+      ++FIDE+
Sbjct: 65  ISLNASDARSKSRINEVLSPVLGNVSVLGSPMIFIDEV 102


>gi|117927413|ref|YP_871964.1| Mername-AA223 peptidase [Acidothermus cellulolyticus 11B]
 gi|117647876|gb|ABK51978.1| membrane protease FtsH catalytic subunit [Acidothermus
           cellulolyticus 11B]
          Length = 654

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 187 VLLYGPPGTGKTLLARAVAGEAGVPFYSISG 217


>gi|83721081|ref|YP_442644.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia
           thailandensis E264]
 gi|167581578|ref|ZP_02374452.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           thailandensis TXDOH]
 gi|167619694|ref|ZP_02388325.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           thailandensis Bt4]
 gi|257138855|ref|ZP_05587117.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia
           thailandensis E264]
 gi|123536902|sp|Q2SWQ5|CLPX_BURTA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|83654906|gb|ABC38969.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           thailandensis E264]
          Length = 423

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104
           ++L +GP G GKT LAQ +AR L V F       + +AG +          LL N     
Sbjct: 116 NILLIGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEV 175

Query: 105 ---DRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 176 DKAQRGIVYIDEIDKIS 192


>gi|15615613|ref|NP_243917.1| ATP-dependent proteinase La [Bacillus halodurans C-125]
 gi|10175673|dbj|BAB06770.1| ATP-dependent proteinase La [Bacillus halodurans C-125]
          Length = 556

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 5/63 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP + E+  GQ E    LK  +     +     HV+  GPPG+GKT  A++V +E   N
Sbjct: 63  VRPESFEDIVGQKEGIRALKAALCGPNPQ-----HVIIYGPPGVGKTAAARLVLQEAKKN 117

Query: 82  FRS 84
             S
Sbjct: 118 PNS 120


>gi|254247969|ref|ZP_04941290.1| ClpX, ATPase regulatory subunit [Burkholderia cenocepacia PC184]
 gi|124872745|gb|EAY64461.1| ClpX, ATPase regulatory subunit [Burkholderia cenocepacia PC184]
          Length = 390

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104
           ++L +GP G GKT LAQ +AR L V F       + +AG +          LL N     
Sbjct: 83  NILLIGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEV 142

Query: 105 ---DRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 143 DKAQRGIVYIDEIDKIS 159


>gi|126441050|ref|YP_001059355.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia
           pseudomallei 668]
 gi|126452859|ref|YP_001066626.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           pseudomallei 1106a]
 gi|134277221|ref|ZP_01763936.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           pseudomallei 305]
 gi|162210030|ref|YP_333873.2| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia
           pseudomallei 1710b]
 gi|167719123|ref|ZP_02402359.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           pseudomallei DM98]
 gi|167738117|ref|ZP_02410891.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           pseudomallei 14]
 gi|167815309|ref|ZP_02446989.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           pseudomallei 91]
 gi|167823711|ref|ZP_02455182.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           pseudomallei 9]
 gi|167836266|ref|ZP_02463149.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           thailandensis MSMB43]
 gi|167845262|ref|ZP_02470770.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           pseudomallei B7210]
 gi|167893806|ref|ZP_02481208.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           pseudomallei 7894]
 gi|167902258|ref|ZP_02489463.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           pseudomallei NCTC 13177]
 gi|167910497|ref|ZP_02497588.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           pseudomallei 112]
 gi|167918526|ref|ZP_02505617.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           pseudomallei BCC215]
 gi|217421598|ref|ZP_03453102.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           pseudomallei 576]
 gi|226197310|ref|ZP_03792887.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           pseudomallei Pakistan 9]
 gi|237812683|ref|YP_002897134.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           pseudomallei MSHR346]
 gi|242316368|ref|ZP_04815384.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           pseudomallei 1106b]
 gi|254179428|ref|ZP_04886027.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           pseudomallei 1655]
 gi|254189183|ref|ZP_04895694.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254197477|ref|ZP_04903899.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           pseudomallei S13]
 gi|254260834|ref|ZP_04951888.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           pseudomallei 1710a]
 gi|254297313|ref|ZP_04964766.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           pseudomallei 406e]
 gi|61211439|sp|Q63V40|CLPX_BURPS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|166214765|sp|A3NWA5|CLPX_BURP0 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|166214766|sp|A3NAI4|CLPX_BURP6 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|126220543|gb|ABN84049.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           pseudomallei 668]
 gi|126226501|gb|ABN90041.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           pseudomallei 1106a]
 gi|134250871|gb|EBA50950.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           pseudomallei 305]
 gi|157806801|gb|EDO83971.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           pseudomallei 406e]
 gi|157936862|gb|EDO92532.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           pseudomallei Pasteur 52237]
 gi|169654218|gb|EDS86911.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           pseudomallei S13]
 gi|184209968|gb|EDU07011.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           pseudomallei 1655]
 gi|217395340|gb|EEC35358.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           pseudomallei 576]
 gi|225930689|gb|EEH26699.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           pseudomallei Pakistan 9]
 gi|237506116|gb|ACQ98434.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           pseudomallei MSHR346]
 gi|242139607|gb|EES26009.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           pseudomallei 1106b]
 gi|254219523|gb|EET08907.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           pseudomallei 1710a]
          Length = 423

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104
           ++L +GP G GKT LAQ +AR L V F       + +AG +          LL N     
Sbjct: 116 NILLIGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEV 175

Query: 105 ---DRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 176 EKAQRGIVYIDEIDKIS 192


>gi|134295957|ref|YP_001119692.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia
           vietnamiensis G4]
 gi|166214767|sp|A4JF04|CLPX_BURVG RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|134139114|gb|ABO54857.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           vietnamiensis G4]
          Length = 423

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104
           ++L +GP G GKT LAQ +AR L V F       + +AG +          LL N     
Sbjct: 116 NILLIGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEV 175

Query: 105 ---DRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 176 DKAQRGIVYIDEIDKIS 192


>gi|325922709|ref|ZP_08184449.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Xanthomonas
           gardneri ATCC 19865]
 gi|325546826|gb|EGD17940.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Xanthomonas
           gardneri ATCC 19865]
          Length = 428

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 58/133 (43%), Gaps = 29/133 (21%)

Query: 15  EDADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAE----------ALDHVLF 59
           + A  SL +PR + E       GQ+ A   L V +     R E          A  ++L 
Sbjct: 60  QSARSSLPKPREILEVLDQYVIGQLRAKRTLAVAVYNHYKRIESRSKNDEVELAKSNILL 119

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDV---- 108
           VGP G GKT LA+ +AR L V F       + +AG +   + N+        D DV    
Sbjct: 120 VGPTGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQ 179

Query: 109 ---LFIDEIHRLS 118
              ++IDEI ++S
Sbjct: 180 QGIVYIDEIDKIS 192


>gi|307942063|ref|ZP_07657414.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Roseibium sp.
           TrichSKD4]
 gi|307774349|gb|EFO33559.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Roseibium sp.
           TrichSKD4]
          Length = 431

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L  GP G GKT LAQ +AR L V F       + +AG +   + N+         
Sbjct: 120 AKSNILLAGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASD 179

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDE+ ++S
Sbjct: 180 YNVERAQRGIVYIDEVDKIS 199


>gi|307595017|ref|YP_003901334.1| Replication factor C [Vulcanisaeta distributa DSM 14429]
 gi|307550218|gb|ADN50283.1| Replication factor C [Vulcanisaeta distributa DSM 14429]
          Length = 327

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 5/66 (7%)

Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
          S+E   +   RP  +++   Q    + +K  +         + H+LF GPPG GKTT+A 
Sbjct: 3  SEEVLWVEKYRPSRIDDIIDQDHVKARVKEMLANGN-----IPHLLFFGPPGTGKTTMAL 57

Query: 73 VVAREL 78
           +AREL
Sbjct: 58 AIAREL 63


>gi|300710324|ref|YP_003736138.1| hypothetical protein HacjB3_04775 [Halalkalicoccus jeotgali B3]
 gi|299124007|gb|ADJ14346.1| hypothetical protein HacjB3_04775 [Halalkalicoccus jeotgali B3]
          Length = 723

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 496 VLLYGPPGTGKTLLAKAVANEADSNFISIKGP 527


>gi|297466769|ref|XP_001787757.2| PREDICTED: Cell Division Cycle related family member
           (cdc-48.2)-like, partial [Bos taurus]
          Length = 786

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALL------TNLEDRDV 108
           VL  GPPG GKT +A+ VA E+G      +GP +I+K  G+  A L        L    +
Sbjct: 396 VLLYGPPGTGKTMIARAVANEVGAYVSVINGPEIISKFYGETEARLRQIFAEATLRHPSI 455

Query: 109 LFIDEIHRL 117
           +FIDE+  L
Sbjct: 456 IFIDELDAL 464



 Score = 38.1 bits (87), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 16/32 (50%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG  KT +A+ +A E G+NF +  GP
Sbjct: 670 VLLYGPPGCSKTMIAKALANESGLNFLAIKGP 701


>gi|291530324|emb|CBK95909.1| membrane protease FtsH catalytic subunit [Eubacterium siraeum 70/3]
          Length = 649

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           VL +GPPG GKT LA+ VA E  V F S SG    +   G  A+ + +L D+       +
Sbjct: 206 VLLLGPPGTGKTLLAKAVAGEANVPFFSISGSDFVEMFVGVGASRVRDLFDQAKKHTPSI 265

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 266 IFIDEI 271


>gi|291526623|emb|CBK92209.1| ATP-dependent metalloprotease FtsH [Eubacterium rectale M104/1]
          Length = 604

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E  V F S SG    +      A  +  L    +++   +
Sbjct: 201 VLLVGPPGTGKTMLAKAVAGESNVPFFSMSGSEFVEMFVGMGASKVRDLFRQAKEKAPCI 260

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 261 VFIDEI 266


>gi|289616165|emb|CBI56961.1| putative ATP-dependent peptidase [Sordaria macrospora]
          Length = 846

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F + SG
Sbjct: 399 VLLVGPPGTGKTLLARAVAGEAGVPFFNMSG 429


>gi|288921153|ref|ZP_06415441.1| ATP-dependent metalloprotease FtsH [Frankia sp. EUN1f]
 gi|288347462|gb|EFC81751.1| ATP-dependent metalloprotease FtsH [Frankia sp. EUN1f]
          Length = 751

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 201 VLLYGPPGTGKTLLARAVAGEAGVPFYSISG 231


>gi|295676518|ref|YP_003605042.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           sp. CCGE1002]
 gi|295436361|gb|ADG15531.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           sp. CCGE1002]
          Length = 423

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104
           ++L +GP G GKT LAQ +AR L V F       + +AG +          LL N     
Sbjct: 116 NILLIGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEV 175

Query: 105 ---DRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 176 DKAQRGIVYIDEIDKIS 192


>gi|297738362|emb|CBI27563.3| unnamed protein product [Vitis vinifera]
          Length = 769

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 19/31 (61%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           L  GPPG GKT +A+ VA E G NF    GP
Sbjct: 536 LLYGPPGCGKTLIAKAVANEAGANFIHIKGP 566


>gi|260437757|ref|ZP_05791573.1| ATP-dependent metalloprotease FtsH [Butyrivibrio crossotus DSM
           2876]
 gi|292809779|gb|EFF68984.1| ATP-dependent metalloprotease FtsH [Butyrivibrio crossotus DSM
           2876]
          Length = 618

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           V+ VGPPG GKT +A+ VA E GV F S SG
Sbjct: 210 VILVGPPGTGKTLIAKAVAGEAGVPFFSISG 240


>gi|238922414|ref|YP_002935928.1| microtubule-severing ATPase [Eubacterium eligens ATCC 27750]
 gi|238874086|gb|ACR73794.1| microtubule-severing ATPase [Eubacterium eligens ATCC 27750]
          Length = 604

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E  V F S SG    +      A  +  L    +++   +
Sbjct: 201 VLLVGPPGTGKTMLAKAVAGESNVPFFSMSGSEFVEMFVGMGASKVRDLFRQAKEKAPCI 260

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 261 VFIDEI 266


>gi|238026974|ref|YP_002911205.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia
           glumae BGR1]
 gi|237876168|gb|ACR28501.1| ATP-dependent protease ATP-binding subunit [Burkholderia glumae
           BGR1]
          Length = 423

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104
           ++L +GP G GKT LAQ +AR L V F       + +AG +          LL N     
Sbjct: 116 NILLIGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEV 175

Query: 105 ---DRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 176 EKAQRGIVYIDEIDKIS 192


>gi|189485209|ref|YP_001956150.1| cell division protease FtsH [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|310946769|sp|B1GZK7|FTSH_UNCTG RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|170287168|dbj|BAG13689.1| cell division protease FtsH [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
          Length = 631

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 42/115 (36%), Positives = 54/115 (46%), Gaps = 20/115 (17%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAK--ARAEAL-----DHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  EA   L+  IE  K  AR + L       VL  G PG GKT LA+ VA E 
Sbjct: 154 TFKDVAGCDEAKEELQELIEFLKDPARFQKLGGKIPKGVLLFGSPGTGKTLLAKAVAGEA 213

Query: 79  GVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEI-----HRLSII 120
            V F S+SG    +   G  A+ + +L D        +LFIDEI     HR + I
Sbjct: 214 NVPFFSSSGSEFVEMFVGVGASRVRDLFDHGRKSAPCLLFIDEIDAVGRHRFAGI 268


>gi|167562415|ref|ZP_02355331.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           oklahomensis EO147]
 gi|167569598|ref|ZP_02362472.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           oklahomensis C6786]
          Length = 423

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104
           ++L +GP G GKT LAQ +AR L V F       + +AG +          LL N     
Sbjct: 116 NILLIGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEV 175

Query: 105 ---DRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 176 EKAQRGIVYIDEIDKIS 192


>gi|126696352|ref|YP_001091238.1| cell division protein FtsH4 [Prochlorococcus marinus str. MIT 9301]
 gi|126543395|gb|ABO17637.1| cell division protein FtsH4 [Prochlorococcus marinus str. MIT 9301]
          Length = 584

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL +GPPG GKT LA+ +A E GV F S S        V   A  +  L +  +++   +
Sbjct: 170 VLLIGPPGTGKTLLAKAIAGESGVPFLSISASEFVELFVGVGASRVRDLFSKAKEKSPCI 229

Query: 109 LFIDEIHRL 117
           +FIDEI  +
Sbjct: 230 IFIDEIDSI 238


>gi|118443245|ref|YP_878862.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium novyi
           NT]
 gi|229889851|sp|A0Q2L0|CLPX_CLONN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|118133701|gb|ABK60745.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           novyi NT]
          Length = 431

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +AR L V F       + +AG    D+  +L  L        
Sbjct: 110 NILLLGPTGSGKTLLAQTLARLLNVPFAMADATTLTEAGYVGEDVENILLKLIQNADYDI 169

Query: 104 --EDRDVLFIDEIHRLS 118
              +R +++IDEI +++
Sbjct: 170 EKAERGIIYIDEIDKIA 186


>gi|186475877|ref|YP_001857347.1| ATP-dependent metalloprotease FtsH [Burkholderia phymatum STM815]
 gi|184192336|gb|ACC70301.1| ATP-dependent metalloprotease FtsH [Burkholderia phymatum STM815]
          Length = 653

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 38/72 (52%), Gaps = 8/72 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL------EDRDV 108
           VL VG PG GKT LA+ VA E GV F S SG    +   G  AA + +L      E   +
Sbjct: 218 VLIVGAPGTGKTLLAKAVAGEAGVPFHSVSGAGFVEMFVGVGAARVRDLFEQAQAEAPCI 277

Query: 109 LFIDEIHRLSII 120
           +FIDE+  L  +
Sbjct: 278 IFIDELDALGKV 289


>gi|10435075|dbj|BAB14482.1| unnamed protein product [Homo sapiens]
 gi|158256350|dbj|BAF84146.1| unnamed protein product [Homo sapiens]
          Length = 620

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL  GPPG+GKT L Q VARE G    + S P +
Sbjct: 237 VLLAGPPGVGKTQLVQAVAREAGAELLAVSAPAL 270


>gi|21241839|ref|NP_641421.1| ATP-dependent protease ATP-binding subunit ClpX [Xanthomonas
           axonopodis pv. citri str. 306]
 gi|78046638|ref|YP_362813.1| ATP-dependent protease ATP-binding subunit ClpX [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|289664184|ref|ZP_06485765.1| ATP-dependent protease ATP-binding subunit ClpX [Xanthomonas
           campestris pv. vasculorum NCPPB702]
 gi|289668775|ref|ZP_06489850.1| ATP-dependent protease ATP-binding subunit ClpX [Xanthomonas
           campestris pv. musacearum NCPPB4381]
 gi|294627914|ref|ZP_06706493.1| ATP-dependent protease ATP-binding subunit [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 11122]
 gi|294666561|ref|ZP_06731802.1| ATP-dependent protease ATP-binding subunit [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
 gi|325914925|ref|ZP_08177257.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325927442|ref|ZP_08188689.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Xanthomonas
           perforans 91-118]
 gi|23813860|sp|Q8PNI4|CLPX_XANAC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|123585731|sp|Q3BWQ0|CLPX_XANC5 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|21107219|gb|AAM35957.1| ATP-dependent Clp protease ATP binding subunit [Xanthomonas
           axonopodis pv. citri str. 306]
 gi|78035068|emb|CAJ22713.1| ATP-dependent Clp protease ATP binding subunit [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|292597828|gb|EFF41986.1| ATP-dependent protease ATP-binding subunit [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 11122]
 gi|292603705|gb|EFF47115.1| ATP-dependent protease ATP-binding subunit [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
 gi|325538818|gb|EGD10482.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325542192|gb|EGD13687.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Xanthomonas
           perforans 91-118]
          Length = 428

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 58/133 (43%), Gaps = 29/133 (21%)

Query: 15  EDADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAE----------ALDHVLF 59
           + A  SL +PR + E       GQ+ A   L V +     R E          A  ++L 
Sbjct: 60  QSARSSLPKPREILEVLDQYVIGQLRAKRTLAVAVYNHYKRIESRSKNDDVELAKSNILL 119

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDV---- 108
           VGP G GKT LA+ +AR L V F       + +AG +   + N+        D DV    
Sbjct: 120 VGPTGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQ 179

Query: 109 ---LFIDEIHRLS 118
              ++IDEI ++S
Sbjct: 180 QGIVYIDEIDKIS 192


>gi|116621146|ref|YP_823302.1| Lon-A peptidase [Candidatus Solibacter usitatus Ellin6076]
 gi|122254884|sp|Q026Q2|LON_SOLUE RecName: Full=Lon protease; AltName: Full=ATP-dependent protease La
 gi|116224308|gb|ABJ83017.1| Lon-A peptidase. Serine peptidase. MEROPS family S16 [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 806

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 81/174 (46%), Gaps = 37/174 (21%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           + FVGPPG+GKT+L   +A+  G  F R + G V  +A              G +  ++ 
Sbjct: 352 LCFVGPPGVGKTSLGMSIAKATGRKFVRMSLGGVRDEAEVRGHRRTYIGALPGQIIQMMK 411

Query: 102 NLEDRDVLF-IDEIHRLSI--------IVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152
               R+ +F +DE+ ++S+         + E+L P      +D  +        V+ +LS
Sbjct: 412 KAGTRNPVFMLDEVDKMSMDFRGDPSAALLEVLDPEQNFMFVDHYL-------DVEYDLS 464

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFY-EIEDLKT----IVQRGAKLTGL 201
           +   +A    +  +   LQDR  + IRL+ Y E+E ++     +V++  + TGL
Sbjct: 465 QVFFVATANVMHTIPAALQDRMEV-IRLSGYTELEKMEIAKRFLVKKQIEATGL 517


>gi|320163523|gb|EFW40422.1| proteasome-activating nucleotidase [Capsaspora owczarzaki ATCC
           30864]
          Length = 956

 Score = 40.0 bits (92), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 35/69 (50%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VL  GPPG GKT LA+ VA E   NF S S P + K   G+    L  +  R       V
Sbjct: 611 VLLFGPPGTGKTLLARAVATESHANFLSVSVPDLVKGHVGESERTLRRVFARAVRLAPCV 670

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 671 VFIDEIDAL 679


>gi|308272158|emb|CBX28765.1| Cell division protease ftsH [uncultured Desulfobacterium sp.]
          Length = 609

 Score = 40.0 bits (92), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 33/69 (47%), Gaps = 7/69 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEAL-------DHVLFVGPPGLGKTTLAQVVAREL 78
           T E+  G  EA   L   +E  K   +           VL +GPPG GKT LA+ +A E 
Sbjct: 151 TFEDVAGIEEAKEELSEIVEFLKEPKKYTRLGGRIPKGVLLMGPPGTGKTLLARAIAGEA 210

Query: 79  GVNFRSTSG 87
           GV F S SG
Sbjct: 211 GVPFFSISG 219


>gi|260566356|ref|ZP_05836826.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella suis
           bv. 4 str. 40]
 gi|260155874|gb|EEW90954.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella suis
           bv. 4 str. 40]
          Length = 424

 Score = 40.0 bits (92), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L VGP G GKT LAQ +AR + V F       + +AG +   + N+         
Sbjct: 112 AKSNILLVGPTGCGKTYLAQTLARIIDVPFIMADATTLTEAGYVGEDVENIILKLLQAAD 171

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDE+ ++S
Sbjct: 172 YNVERAQRGIVYIDEVDKIS 191


>gi|269796484|ref|YP_003315939.1| membrane protease FtsH catalytic subunit [Sanguibacter keddieii DSM
           10542]
 gi|269098669|gb|ACZ23105.1| membrane protease FtsH catalytic subunit [Sanguibacter keddieii DSM
           10542]
          Length = 684

 Score = 40.0 bits (92), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 198 VLLYGPPGTGKTLLARAVAGEAGVPFYSISG 228


>gi|257868305|ref|ZP_05647958.1| peptidase M41 [Enterococcus casseliflavus EC30]
 gi|257874422|ref|ZP_05654075.1| peptidase M41 [Enterococcus casseliflavus EC10]
 gi|257802419|gb|EEV31291.1| peptidase M41 [Enterococcus casseliflavus EC30]
 gi|257808586|gb|EEV37408.1| peptidase M41 [Enterococcus casseliflavus EC10]
          Length = 702

 Score = 40.0 bits (92), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 224 VLLEGPPGTGKTLLAKAVAGEAGVPFYSISG 254


>gi|256826672|ref|YP_003150631.1| membrane protease FtsH catalytic subunit [Cryptobacterium curtum
           DSM 15641]
 gi|256582815|gb|ACU93949.1| membrane protease FtsH catalytic subunit [Cryptobacterium curtum
           DSM 15641]
          Length = 759

 Score = 40.0 bits (92), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
            L VGPPG GKT LA+ VA E GV F S SG
Sbjct: 230 CLLVGPPGTGKTLLARAVAGEAGVPFFSISG 260


>gi|256113665|ref|ZP_05454476.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella
           melitensis bv. 3 str. Ether]
 gi|265995025|ref|ZP_06107582.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
           melitensis bv. 3 str. Ether]
 gi|262766138|gb|EEZ11927.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
           melitensis bv. 3 str. Ether]
          Length = 424

 Score = 40.0 bits (92), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L VGP G GKT LAQ +AR + V F       + +AG +   + N+         
Sbjct: 112 AKSNILLVGPTGCGKTYLAQTLARIIDVPFIMADATTLTEAGYVGEDVENIILKLLQAAD 171

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDE+ ++S
Sbjct: 172 YNVERAQRGIVYIDEVDKIS 191


>gi|325983081|ref|YP_004295483.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Nitrosomonas
           sp. AL212]
 gi|325532600|gb|ADZ27321.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Nitrosomonas
           sp. AL212]
          Length = 425

 Score = 40.0 bits (92), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L VGP G GKT LAQ +AR L V F       + +AG +   + N+            
Sbjct: 116 NILLVGPTGSGKTLLAQTLARLLDVPFIMADATALTEAGYVGEDVENIIQKLLQKCNYDA 175

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 176 EKAQRGIVYIDEIDKIS 192


>gi|238925821|ref|YP_002939339.1| ATP-dependent metalloprotease FtsH [Eubacterium rectale ATCC 33656]
 gi|238877498|gb|ACR77205.1| ATP-dependent metalloprotease FtsH [Eubacterium rectale ATCC 33656]
          Length = 604

 Score = 40.0 bits (92), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E  V F S SG    +      A  +  L    +++   +
Sbjct: 201 VLLVGPPGTGKTMLAKAVAGESNVPFFSMSGSEFVEMFVGMGASKVRDLFRQAKEKAPCI 260

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 261 VFIDEI 266


>gi|257062950|ref|YP_003142622.1| membrane protease FtsH catalytic subunit [Slackia
           heliotrinireducens DSM 20476]
 gi|310946762|sp|C7N1I1|FTSH_SLAHD RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|256790603|gb|ACV21273.1| membrane protease FtsH catalytic subunit [Slackia
           heliotrinireducens DSM 20476]
          Length = 783

 Score = 40.0 bits (92), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
            L VGPPG GKT LA+ VA E  V F S SG    +   G  A+ + NL ++       +
Sbjct: 321 CLLVGPPGTGKTLLARAVAGEANVPFFSISGSEFVEMFVGVGASRVRNLFEQAKEAAPSI 380

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 381 IFIDEI 386


>gi|227876234|ref|ZP_03994350.1| cell division protein ftsH family protein [Mobiluncus mulieris ATCC
           35243]
 gi|227843195|gb|EEJ53388.1| cell division protein ftsH family protein [Mobiluncus mulieris ATCC
           35243]
          Length = 765

 Score = 40.0 bits (92), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 223 VLLYGPPGTGKTLLAKAVAGEAGVPFFSMSG 253


>gi|254462093|ref|ZP_05075509.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Rhodobacterales bacterium HTCC2083]
 gi|206678682|gb|EDZ43169.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Rhodobacteraceae bacterium HTCC2083]
          Length = 377

 Score = 40.0 bits (92), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+         
Sbjct: 66  AKSNILLMGPTGCGKTLLAQTLARTLDVPFTMADATTLTEAGYVGEDVENIILKLLQASE 125

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDE+ +++
Sbjct: 126 YNVEKAQRGIVYIDEVDKIT 145


>gi|194098830|ref|YP_002001893.1| ATP-dependent protease ATP-binding subunit ClpX [Neisseria
           gonorrhoeae NCCP11945]
 gi|193934120|gb|ACF29944.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae
           NCCP11945]
          Length = 442

 Score = 40.0 bits (92), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +AR+L V F       + +AG    D+  ++T L        
Sbjct: 142 NILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDV 201

Query: 104 --EDRDVLFIDEIHRLS 118
                 +++IDEI ++S
Sbjct: 202 EKAQHGIVYIDEIDKIS 218


>gi|171059223|ref|YP_001791572.1| ATP-dependent protease La [Leptothrix cholodnii SP-6]
 gi|170776668|gb|ACB34807.1| ATP-dependent protease La [Leptothrix cholodnii SP-6]
          Length = 805

 Score = 40.0 bits (92), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 81/188 (43%), Gaps = 38/188 (20%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           +  VGPPG+GKT+L Q VAR  G  F R   G V  +A              G +   L+
Sbjct: 354 LCLVGPPGVGKTSLGQSVARATGRKFVRMALGGVRDEAEIRGHRRTYIGSMPGKVLQSLS 413

Query: 102 NLEDRDVLF-IDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152
            +  R+ LF +DEI +L        S  + E+L P       D  V        V  +LS
Sbjct: 414 KVGVRNPLFLLDEIDKLGMDFRGDPSSALLEVLDPEQNHTFADHYV-------EVDFDLS 466

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR-----GAKLTGLAVTDEA 207
               +A +  +  +   L DR  + IRL+ Y  ++  +I QR       K  G+A T+  
Sbjct: 467 DVMFVATSNSLN-IPPALLDRMEV-IRLSGYTEDEKVSIAQRYLLPKQLKNNGVAETELE 524

Query: 208 ACEIAMRS 215
             E A+R+
Sbjct: 525 VTESAVRA 532


>gi|152992701|ref|YP_001358422.1| ATP-dependent protease ATP-binding subunit ClpX [Sulfurovum sp.
           NBC37-1]
 gi|151424562|dbj|BAF72065.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sulfurovum
           sp. NBC37-1]
          Length = 406

 Score = 40.0 bits (92), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL----- 103
           A  +VL +GP G GKT LAQ +AR L V         + +AG    D+  +LT L     
Sbjct: 104 AKSNVLLIGPTGSGKTLLAQTIARFLNVPIAIADATNLTEAGYVGEDVENILTKLLMEAD 163

Query: 104 -----EDRDVLFIDEIHRLS 118
                 ++ ++FIDEI +++
Sbjct: 164 GDPQRAEQGIVFIDEIDKIA 183


>gi|94994608|ref|YP_602706.1| DNA polymerase III subunit gamma/tau [Streptococcus pyogenes
           MGAS10750]
 gi|94548116|gb|ABF38162.1| DNA polymerase III subunit gamma/tau [Streptococcus pyogenes
           MGAS10750]
          Length = 135

 Score = 40.0 bits (92), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 8/92 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGV 80
            R +T +E  GQ    + LK  +E+ K     + H  LF GP G GKT+ A++ A+ +  
Sbjct: 9   YRSQTFDEMVGQSVISTTLKQAVESGK-----ISHAYLFSGPRGTGKTSAAKIFAKAMNC 63

Query: 81  NFRSTSGPVIAKAGDLAALLTNLEDRDVLFID 112
             +    P      D+   +TN    DV+ ID
Sbjct: 64  PNQVDGEP--CNQCDICRDITNGSLEDVIEID 93


>gi|76154622|gb|AAX26071.2| SJCHGC04043 protein [Schistosoma japonicum]
          Length = 249

 Score = 40.0 bits (92), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
          VL  GPPG GKT +A+ ++ + G+NF S  GP +
Sbjct: 36 VLLEGPPGCGKTLVAKALSNQAGLNFLSVKGPEV 69


>gi|15242534|ref|NP_198816.1| AAA-type ATPase family protein [Arabidopsis thaliana]
 gi|332007117|gb|AED94500.1| AAA-type ATPase family protein [Arabidopsis thaliana]
          Length = 470

 Score = 40.0 bits (92), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 2/93 (2%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           + P+  EE    + A SN K + +    +A    ++L+ GPPG GK+T+   +A  L  N
Sbjct: 211 MDPKKKEEIVNDLIAFSNGKEYYKKI-GKAWKRGYLLY-GPPGTGKSTMISAMANLLNYN 268

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEI 114
                   +    +L  LLT    + ++ I++I
Sbjct: 269 IYDLELTAVKNNSELKKLLTATSSKSIIVIEDI 301


>gi|24644411|ref|NP_731004.1| katanin p60-like 1, isoform B [Drosophila melanogaster]
 gi|281360136|ref|NP_001163521.1| katanin p60-like 1, isoform C [Drosophila melanogaster]
 gi|7296674|gb|AAF51954.1| katanin p60-like 1, isoform B [Drosophila melanogaster]
 gi|25009709|gb|AAN71030.1| AT05655p [Drosophila melanogaster]
 gi|220957924|gb|ACL91505.1| CG1193-PB [synthetic construct]
 gi|220960256|gb|ACL92664.1| CG1193-PB [synthetic construct]
 gi|272476826|gb|ACZ94820.1| katanin p60-like 1, isoform C [Drosophila melanogaster]
          Length = 669

 Score = 40.0 bits (92), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108
           VL VGPPG GKT LA+ VA E G  F + S   +     G+   L      +        
Sbjct: 426 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPST 485

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 486 IFIDEIDAL 494


>gi|58580657|ref|YP_199673.1| ATP-dependent protease ATP-binding subunit ClpX [Xanthomonas oryzae
           pv. oryzae KACC10331]
 gi|84622590|ref|YP_449962.1| ATP-dependent protease ATP-binding subunit [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|166710929|ref|ZP_02242136.1| ATP-dependent protease ATP-binding subunit [Xanthomonas oryzae pv.
           oryzicola BLS256]
 gi|81311961|sp|Q5H433|CLPX_XANOR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|123522986|sp|Q2P6Y9|CLPX_XANOM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|58425251|gb|AAW74288.1| ATP-dependent Clp protease ATP binding subunit [Xanthomonas oryzae
           pv. oryzae KACC10331]
 gi|84366530|dbj|BAE67688.1| ATP-dependent Clp protease ATP binding subunit [Xanthomonas oryzae
           pv. oryzae MAFF 311018]
          Length = 428

 Score = 40.0 bits (92), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 58/133 (43%), Gaps = 29/133 (21%)

Query: 15  EDADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAE----------ALDHVLF 59
           + A  SL +PR + E       GQ+ A   L V +     R E          A  ++L 
Sbjct: 60  QSARSSLPKPREILEVLDQYVIGQLRAKRTLAVAVYNHYKRIESRSKNDDVELAKSNILL 119

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDV---- 108
           VGP G GKT LA+ +AR L V F       + +AG +   + N+        D DV    
Sbjct: 120 VGPTGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQ 179

Query: 109 ---LFIDEIHRLS 118
              ++IDEI ++S
Sbjct: 180 QGIVYIDEIDKIS 192


>gi|23501986|ref|NP_698113.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella suis
           1330]
 gi|163843377|ref|YP_001627781.1| ATP-dependent protease ATP-binding subunit [Brucella suis ATCC
           23445]
 gi|38257637|sp|Q8G0I5|CLPX_BRUSU RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|189082486|sp|B0CGR0|CLPX_BRUSI RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|23347936|gb|AAN30028.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella suis
           1330]
 gi|163674100|gb|ABY38211.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella suis
           ATCC 23445]
          Length = 424

 Score = 40.0 bits (92), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L VGP G GKT LAQ +AR + V F       + +AG +   + N+         
Sbjct: 112 AKSNILLVGPTGCGKTYLAQTLARIIDVPFIMADATTLTEAGYVGEDVENIILKLLQAAD 171

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDE+ ++S
Sbjct: 172 YNVERAQRGIVYIDEVDKIS 191


>gi|115351961|ref|YP_773800.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia
           ambifaria AMMD]
 gi|170702051|ref|ZP_02892967.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           ambifaria IOP40-10]
 gi|171320791|ref|ZP_02909798.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           ambifaria MEX-5]
 gi|172060887|ref|YP_001808539.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia
           ambifaria MC40-6]
 gi|122322953|sp|Q0BEF7|CLPX_BURCM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238689158|sp|B1YRZ4|CLPX_BURA4 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|115281949|gb|ABI87466.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           ambifaria AMMD]
 gi|170133037|gb|EDT01449.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           ambifaria IOP40-10]
 gi|171093961|gb|EDT39075.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           ambifaria MEX-5]
 gi|171993404|gb|ACB64323.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           ambifaria MC40-6]
          Length = 423

 Score = 40.0 bits (92), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104
           ++L +GP G GKT LAQ +AR L V F       + +AG +          LL N     
Sbjct: 116 NILLIGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEV 175

Query: 105 ---DRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 176 DKAQRGIVYIDEIDKIS 192


>gi|71013254|ref|XP_758568.1| hypothetical protein UM02421.1 [Ustilago maydis 521]
 gi|46098226|gb|EAK83459.1| hypothetical protein UM02421.1 [Ustilago maydis 521]
          Length = 1293

 Score = 40.0 bits (92), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 17/32 (53%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT LA+ VA    +NF S  GP
Sbjct: 940 ILLYGPPGTGKTLLAKAVATSCSLNFFSVKGP 971


>gi|325568178|ref|ZP_08144619.1| cell division protein FtsH [Enterococcus casseliflavus ATCC 12755]
 gi|325158379|gb|EGC70530.1| cell division protein FtsH [Enterococcus casseliflavus ATCC 12755]
          Length = 702

 Score = 40.0 bits (92), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 224 VLLEGPPGTGKTLLAKAVAGEAGVPFYSISG 254


>gi|300711801|ref|YP_003737615.1| proteasome-activating nucleotidase [Halalkalicoccus jeotgali B3]
 gi|299125484|gb|ADJ15823.1| proteasome-activating nucleotidase [Halalkalicoccus jeotgali B3]
          Length = 403

 Score = 40.0 bits (92), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL------EDRDV 108
           VL  GPPG GKT LA+ VA E    F   +G  +     G+ A L+ +L       +  V
Sbjct: 185 VLLYGPPGTGKTMLAKAVANETDATFIKMAGSELVHKFIGEGAKLVRDLFEVARSHEPAV 244

Query: 109 LFIDEIHRLS 118
           LFIDEI  ++
Sbjct: 245 LFIDEIDAIA 254


>gi|300691405|ref|YP_003752400.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Ralstonia solanacearum PSI07]
 gi|299078465|emb|CBJ51117.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Ralstonia solanacearum PSI07]
          Length = 424

 Score = 40.0 bits (92), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104
           ++L +GP G GKT LAQ +AR L V F       + +AG +          LL N     
Sbjct: 117 NILLIGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEV 176

Query: 105 ---DRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 177 DKAQRGIVYIDEIDKIS 193


>gi|291557137|emb|CBL34254.1| membrane protease FtsH catalytic subunit [Eubacterium siraeum
           V10Sc8a]
          Length = 649

 Score = 40.0 bits (92), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           VL +GPPG GKT LA+ VA E  V F S SG    +   G  A+ + +L D+       +
Sbjct: 206 VLLLGPPGTGKTLLAKAVAGEANVPFFSISGSDFVEMFVGVGASRVRDLFDQAKKHTPSI 265

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 266 IFIDEI 271


>gi|269102130|ref|ZP_06154827.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268162028|gb|EEZ40524.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 392

 Score = 40.0 bits (92), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LA+ +AR L V F       + +AG +   + N+            
Sbjct: 82  NILLIGPTGSGKTLLAETLARMLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 141

Query: 104 --EDRDVLFIDEIHRLS 118
              +R +++IDEI ++S
Sbjct: 142 AKAERGIVYIDEIDKIS 158


>gi|257463899|ref|ZP_05628285.1| ATP-dependent protease La [Fusobacterium sp. D12]
 gi|317061428|ref|ZP_07925913.1| ATP-dependent protease La [Fusobacterium sp. D12]
 gi|313687104|gb|EFS23939.1| ATP-dependent protease La [Fusobacterium sp. D12]
          Length = 770

 Score = 40.0 bits (92), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 54/226 (23%), Positives = 94/226 (41%), Gaps = 55/226 (24%)

Query: 43  FIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNF------------------R 83
           ++   K   EA   +L  VGPPG+GKT+L + +A  +G  F                  R
Sbjct: 330 YLAVKKLNPEAKGSILCLVGPPGVGKTSLVKSIADSMGRAFVRVSLGGVRDEAEIRGHRR 389

Query: 84  STSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE--------EILYP----AMED 131
           +  G +  K   + AL     +  V+ +DEI ++S  ++        E+L P    + ED
Sbjct: 390 TYVGSMPGKI--MKALKEAGTNNPVILLDEIDKMSSDIKGDPASAMLEVLDPEQNKSFED 447

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL--- 188
             +D+             +LS+   +A    +  ++ PL DR  I    ++ E E L   
Sbjct: 448 HFIDM-----------PFDLSKVFFVATANSLYPVSRPLIDRMEIVELDSYTEYEKLHIA 496

Query: 189 -KTIVQRGAKLTG-----LAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            + ++++  K  G     L++TD+A   I       P +  R L+R
Sbjct: 497 KQYLIKQARKENGLEKISLSITDKAISRIINEYTAEPGV--RNLKR 540


>gi|296127044|ref|YP_003634296.1| hypothetical protein Bmur_2020 [Brachyspira murdochii DSM 12563]
 gi|296018860|gb|ADG72097.1| Sigma 54 interacting domain protein [Brachyspira murdochii DSM
           12563]
          Length = 411

 Score = 40.0 bits (92), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 65/139 (46%), Gaps = 30/139 (21%)

Query: 10  RNVSQEDADISLLRPRT----LEEFT-GQ--------VEACSNLKVFIEAAKARAEA--- 53
           +   ++D +I +L P+     L+E+  GQ        V   ++ K   ++A+ + +    
Sbjct: 52  KKSKEKDYEIKILPPKQIKSLLDEYVIGQNYAKKVLSVAVYNHYKRITQSAEDKNDVEIE 111

Query: 54  LDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTN----------- 102
             +VL +GP G GKT LA+ +A+ L V F       + +AG +   + N           
Sbjct: 112 KSNVLLIGPTGSGKTLLARTLAKALNVPFAIADATTVTEAGYVGDDVENILLRLIQNADG 171

Query: 103 ---LEDRDVLFIDEIHRLS 118
              L ++ +++IDEI ++S
Sbjct: 172 DIKLAEKGIIYIDEIDKIS 190


>gi|224079924|ref|XP_002305974.1| predicted protein [Populus trichocarpa]
 gi|222848938|gb|EEE86485.1| predicted protein [Populus trichocarpa]
          Length = 556

 Score = 40.0 bits (92), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL------EDRDV 108
           VL VGPPG GKT LA+ VA E GV F S S     +   G  AA + +L          +
Sbjct: 304 VLLVGPPGTGKTLLARAVAGEAGVPFFSVSASEFVELFVGRGAARIRDLFNAARKSSPSI 363

Query: 109 LFIDEI 114
           +FIDE+
Sbjct: 364 IFIDEL 369


>gi|218197837|gb|EEC80264.1| hypothetical protein OsI_22232 [Oryza sativa Indica Group]
          Length = 951

 Score = 40.0 bits (92), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK-----AGDLAALLTNLEDR---DV 108
           +L  GPPG GKT LA+ +A E G NF S +G  +       A  L   L +   R    +
Sbjct: 699 ILLFGPPGTGKTLLAKALATEAGANFISITGSNLTSKWFGDAEKLTKALFSFASRLAPVI 758

Query: 109 LFIDEIHRL 117
           +F+DE+  L
Sbjct: 759 IFVDEVDSL 767


>gi|164662989|ref|XP_001732616.1| hypothetical protein MGL_0391 [Malassezia globosa CBS 7966]
 gi|159106519|gb|EDP45402.1| hypothetical protein MGL_0391 [Malassezia globosa CBS 7966]
          Length = 1091

 Score = 40.0 bits (92), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  G PG GKT LA  VA+E G+NF S  GP +
Sbjct: 742 LLLYGFPGCGKTLLASAVAKECGLNFISVKGPEV 775


>gi|119222225|gb|ABL62310.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222227|gb|ABL62311.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222229|gb|ABL62312.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222231|gb|ABL62313.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222233|gb|ABL62314.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222235|gb|ABL62315.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222237|gb|ABL62316.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222239|gb|ABL62317.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222241|gb|ABL62318.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
          Length = 199

 Score = 40.0 bits (92), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +AR L V F       + +AG    D+  ++ NL        
Sbjct: 2   NILLLGPTGSGKTLLAQTLARILNVPFTIADATCLTEAGYVGEDVENIIVNLLQAADHDI 61

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI +++
Sbjct: 62  ERAQRGIVYIDEIDKIA 78


>gi|116075678|ref|ZP_01472937.1| cell division protein FtsH2 [Synechococcus sp. RS9916]
 gi|116066993|gb|EAU72748.1| cell division protein FtsH2 [Synechococcus sp. RS9916]
          Length = 615

 Score = 40.0 bits (92), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
            L VGPPG GKT LA+ VA E GV F S SG
Sbjct: 196 CLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 226


>gi|119184765|ref|XP_001243250.1| hypothetical protein CIMG_07146 [Coccidioides immitis RS]
          Length = 697

 Score = 40.0 bits (92), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 516 VLLWGPPGCGKTLLAKAVANESRANFISVKGP 547



 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL  GPPG GKT +A   A ELGV F + S P I    +G+    L    D        +
Sbjct: 211 VLLHGPPGCGKTLIANAFAAELGVPFIAISAPSIVSGMSGESEKALREHFDEAKKAAPCL 270

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 271 VFIDEIDAIT 280


>gi|91783521|ref|YP_558727.1| ATP-dependent protease ATP-binding subunit [Burkholderia xenovorans
           LB400]
 gi|123358810|sp|Q13Z14|CLPX_BURXL RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|91687475|gb|ABE30675.1| ClpX, ATPase regulatory subunit [Burkholderia xenovorans LB400]
          Length = 423

 Score = 40.0 bits (92), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104
           ++L +GP G GKT LAQ +AR L V F       + +AG +          LL N     
Sbjct: 116 NILLIGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEV 175

Query: 105 ---DRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 176 DKAQRGIVYIDEIDKIS 192


>gi|55380068|ref|YP_137918.1| proteasome-activating nucleotidase [Haloarcula marismortui ATCC
           43049]
 gi|55232793|gb|AAV48212.1| proteasome-activating nucleotidase 2 [Haloarcula marismortui ATCC
           43049]
          Length = 404

 Score = 40.0 bits (92), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL------EDRDV 108
           VL  GPPG GKT LA+ VA E    F   +G  +     G+ A L+ +L      E+  V
Sbjct: 185 VLLHGPPGTGKTMLAKAVANETDATFIKMAGSELVHKFIGEGAKLVRDLFELARQEEPAV 244

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 245 VFIDEIDAIA 254


>gi|68068609|ref|XP_676215.1| cell division cycle protein [Plasmodium berghei strain ANKA]
 gi|56495807|emb|CAH97250.1| cell division cycle protein 48 homologue, putative [Plasmodium
           berghei]
          Length = 500

 Score = 40.0 bits (92), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTN-LEDRD-----V 108
           VL  GPPG GKT +A+ VA E G  F   +GP V++K AG+  A L    E+ +     +
Sbjct: 242 VLLYGPPGSGKTCIARAVANETGAFFFLINGPEVMSKMAGEAEANLRRAFEEAEKNSPAI 301

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 302 IFIDEIDSIA 311


>gi|305664431|ref|YP_003860718.1| putative transmembrane AAA-metalloprotease FtsH [Maribacter sp.
           HTCC2170]
 gi|88708448|gb|EAR00684.1| putative transmembrane AAA-metalloprotease FtsH [Maribacter sp.
           HTCC2170]
          Length = 669

 Score = 40.0 bits (92), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 34/65 (52%), Gaps = 8/65 (12%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VL 109
           L VGPPG GKT LA+ VA E  V F S SG       V   A  +  L    +D+   ++
Sbjct: 233 LLVGPPGTGKTLLAKAVAGEAKVPFFSLSGSDFVEMFVGVGASRVRDLFKQAKDKSPAII 292

Query: 110 FIDEI 114
           FIDEI
Sbjct: 293 FIDEI 297


>gi|158312162|ref|YP_001504670.1| ATP-dependent metalloprotease FtsH [Frankia sp. EAN1pec]
 gi|158107567|gb|ABW09764.1| ATP-dependent metalloprotease FtsH [Frankia sp. EAN1pec]
          Length = 753

 Score = 40.0 bits (92), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 201 VLLYGPPGTGKTLLARAVAGEAGVPFYSISG 231


>gi|328769715|gb|EGF79758.1| hypothetical protein BATDEDRAFT_89162 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 1081

 Score = 40.0 bits (92), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 17/32 (53%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  G PG GKT LA  V++E G+NF S  GP
Sbjct: 772 LLLFGYPGCGKTMLASAVSKECGLNFISVKGP 803


>gi|330446592|ref|ZP_08310244.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328490783|dbj|GAA04741.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 426

 Score = 40.0 bits (92), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LA+ +AR L V F       + +AG +   + N+            
Sbjct: 116 NILLIGPTGSGKTLLAETLARMLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 175

Query: 104 --EDRDVLFIDEIHRLS 118
              +R +++IDEI ++S
Sbjct: 176 AKAERGIVYIDEIDKIS 192


>gi|315124494|ref|YP_004066498.1| putative membrane bound ATPase [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|315018216|gb|ADT66309.1| putative membrane bound ATPase [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 233

 Score = 40.0 bits (92), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG+GKT +A+ VA E GV F   SG
Sbjct: 188 VLMVGPPGVGKTLIAKAVAGEAGVPFFYQSG 218


>gi|312897779|ref|ZP_07757195.1| ATP-dependent protease, Lon family [Megasphaera micronuciformis
           F0359]
 gi|310621163|gb|EFQ04707.1| ATP-dependent protease, Lon family [Megasphaera micronuciformis
           F0359]
          Length = 635

 Score = 40.0 bits (92), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 12/78 (15%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEAL--DHVLFVGPPGLGKTTLAQVV---AR 76
           +RP+ +E   GQ  A       +EA +++  ++   H+L  GPPG+GKTT A+++   A+
Sbjct: 170 VRPQKMERIVGQERA-------VEAMRSKVASVYPQHILLYGPPGVGKTTAARIILEEAK 222

Query: 77  ELGVNFRSTSGPVIAKAG 94
           +L     S   P +   G
Sbjct: 223 KLPYTPFSVDAPFVETDG 240


>gi|256810123|ref|YP_003127492.1| 26S proteasome subunit P45 family [Methanocaldococcus fervens AG86]
 gi|256793323|gb|ACV23992.1| 26S proteasome subunit P45 family [Methanocaldococcus fervens AG86]
          Length = 430

 Score = 40.0 bits (92), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL------EDRDV 108
           +L  GPPG GKT LA+ VARE    F    G  + K   G+ A L+ ++      +   +
Sbjct: 207 ILLYGPPGTGKTLLAKAVARETNATFIRVVGSELVKKFIGEGATLVKDIFKLAKEKAPSI 266

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 267 IFIDEIDAIA 276


>gi|288574818|ref|ZP_06393175.1| ATP-dependent metalloprotease FtsH [Dethiosulfovibrio peptidovorans
           DSM 11002]
 gi|288570559|gb|EFC92116.1| ATP-dependent metalloprotease FtsH [Dethiosulfovibrio peptidovorans
           DSM 11002]
          Length = 640

 Score = 40.0 bits (92), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 36/73 (49%), Gaps = 8/73 (10%)

Query: 23  RPR-TLEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVV 74
           RP+ T ++  G  E+   L+  IE         K  A     VL +GPPG GKT LA+  
Sbjct: 150 RPKVTFDDVAGCDESKEELQEVIEYLKDPSRFTKLGATVPKGVLLLGPPGTGKTLLARAC 209

Query: 75  ARELGVNFRSTSG 87
           A E  V F STSG
Sbjct: 210 AGEAAVPFFSTSG 222


>gi|222153344|ref|YP_002562521.1| DNA polymerase III subunits gamma and tau [Streptococcus uberis
           0140J]
 gi|222114157|emb|CAR42660.1| DNA polymerase III subunit gamma/tau [Streptococcus uberis 0140J]
          Length = 555

 Score = 40.0 bits (92), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 8/91 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           R ++  E  GQ    + LK  +E+ K     + H  LF GP G GKT+ A++ A+ +   
Sbjct: 10  RSQSFSEMVGQSVISTTLKQAVESGK-----ISHAYLFSGPRGTGKTSAAKIFAKAMNCP 64

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID 112
            +    P      DL   +TN    DV+ ID
Sbjct: 65  HQVNGEPC--NQCDLCQDITNGSLEDVIEID 93


>gi|198453074|ref|XP_002137592.1| GA27309 [Drosophila pseudoobscura pseudoobscura]
 gi|198132203|gb|EDY68150.1| GA27309 [Drosophila pseudoobscura pseudoobscura]
          Length = 679

 Score = 40.0 bits (92), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108
           VL VGPPG GKT LA+ VA E G  F + S   +     G+   L      +        
Sbjct: 436 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPST 495

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 496 IFIDEIDAL 504


>gi|170692396|ref|ZP_02883559.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           graminis C4D1M]
 gi|170142826|gb|EDT10991.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           graminis C4D1M]
          Length = 423

 Score = 40.0 bits (92), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104
           ++L +GP G GKT LAQ +AR L V F       + +AG +          LL N     
Sbjct: 116 NILLIGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEV 175

Query: 105 ---DRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 176 DKAQRGIVYIDEIDKIS 192


>gi|218848112|ref|YP_002454681.1| DNA polymerase III subunit gamma/tau [Bacillus cereus G9842]
 gi|218546243|gb|ACK98636.1| DNA polymerase III subunit gamma/tau [Bacillus cereus G9842]
          Length = 548

 Score = 40.0 bits (92), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 5/90 (5%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP    E  GQ    +++K  I+ A   A+     +F GP G GKTT+A+++A  L    
Sbjct: 10  RPTNFSELIGQ----NHIKQTIQNALKLAKFSHAYMFTGPRGTGKTTIAKLIATSLNCES 65

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID 112
            +  G    +     A+  N    DVL ID
Sbjct: 66  LNNEGEPCNECSQCKAIRGN-SHADVLEID 94


>gi|168032696|ref|XP_001768854.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162679966|gb|EDQ66407.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 594

 Score = 40.0 bits (92), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAAL----LTNLEDRD---- 107
           ++LF GPPG GKT  A+V+A+E G+++   +G  +A  G  A      L N   R     
Sbjct: 348 NMLFYGPPGTGKTMAAKVLAQESGLDYALMTGGDVAPLGANAVTKIHELFNWAGRTRRGL 407

Query: 108 VLFIDE 113
           +LFIDE
Sbjct: 408 LLFIDE 413


>gi|156547510|ref|XP_001603936.1| PREDICTED: similar to 26S proteasome regulatory complex ATPase RPT4
           [Nasonia vitripennis]
          Length = 393

 Score = 40.0 bits (92), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 56/124 (45%), Gaps = 23/124 (18%)

Query: 8   LSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV--------L 58
           L  N+S ED  D+      T  E  G  E    L+  IE      E    V        L
Sbjct: 122 LVYNMSHEDPGDV------TYSEIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCL 175

Query: 59  FVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA-GDLAALLTNLED--RD----VLF 110
             GPPG GKT LA+ VA +L  NF +  S  ++ K  G+ A L+  + +  RD    ++F
Sbjct: 176 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARDHQPCIIF 235

Query: 111 IDEI 114
           +DEI
Sbjct: 236 MDEI 239


>gi|108756903|ref|YP_632232.1| ATP-dependent protease ATP-binding subunit ClpX [Myxococcus xanthus
           DK 1622]
 gi|108460783|gb|ABF85968.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Myxococcus
           xanthus DK 1622]
          Length = 425

 Score = 40.0 bits (92), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +AR L V F       + +AG    D+  ++ NL        
Sbjct: 121 NILLIGPTGSGKTLLAQSLARFLNVPFTIADATSLTEAGYVGEDVENIIQNLLHNADYDV 180

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI +++
Sbjct: 181 EKASRGIVYIDEIDKIA 197


>gi|148227978|ref|NP_001082566.1| RAD17 homolog [Xenopus laevis]
 gi|47937773|gb|AAH72343.1| Rad17 protein [Xenopus laevis]
          Length = 674

 Score = 40.0 bits (92), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 12/106 (11%)

Query: 11  NVSQEDADISLLRPRTLEEFT------GQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           + SQ D  I   RP    E         +VEA   LK  +E  + + +    +L  GPPG
Sbjct: 79  DYSQNDPWIDKYRPEIQAELAVHKKKIEEVEAW--LKTHVEK-RPQKQGGQILLLTGPPG 135

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLF 110
            GKT   QV+ +E+G+  +    P++    +    L  + DRD  F
Sbjct: 136 CGKTATIQVLTKEMGIQVQEWINPLMQ---EFKQDLPEVFDRDTRF 178


>gi|47220181|emb|CAG07322.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 486

 Score = 40.0 bits (92), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 55/197 (27%), Positives = 80/197 (40%), Gaps = 43/197 (21%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DV 108
           VL VGPPG GKT LA+ VA E G  F + S   +     G+   L+  L +         
Sbjct: 241 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRVLFEMARFYAPTT 300

Query: 109 LFIDEI-----HRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATT 161
           +FIDEI      R +    E       +F  Q+D M G  P       + S+  ++ A T
Sbjct: 301 IFIDEIDSICSRRGTSDEHEASRRVKSEFLVQMDGM-GNTPDE-----DPSKMVMVLAAT 354

Query: 162 RVGL-----LTNPLQDRFGIP----------IRLNFYEIE-----DLKTIVQRGAKLTGL 201
                    L   L+ R  IP          +++N  E+E     DL  I ++    +G 
Sbjct: 355 NFPWDIDEALRRRLEKRIYIPLPSASGRAELLKINLKEVEVAEDVDLNVIAEKMEGYSGA 414

Query: 202 AVTD--EAACEIAMRSR 216
            +T+    A  +AMR R
Sbjct: 415 DITNVCRDASMMAMRRR 431


>gi|325285489|ref|YP_004261279.1| ATP-dependent metalloprotease FtsH [Cellulophaga lytica DSM 7489]
 gi|324320943|gb|ADY28408.1| ATP-dependent metalloprotease FtsH [Cellulophaga lytica DSM 7489]
          Length = 660

 Score = 40.0 bits (92), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 34/65 (52%), Gaps = 8/65 (12%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VL 109
           L VGPPG GKT LA+ VA E  V F S SG       V   A  +  L    +D+   ++
Sbjct: 233 LLVGPPGTGKTLLAKAVAGEAKVPFFSLSGSDFVEMFVGVGASRVRDLFKQAKDKSPAII 292

Query: 110 FIDEI 114
           FIDEI
Sbjct: 293 FIDEI 297


>gi|299146823|ref|ZP_07039891.1| DNA polymerase III, gamma and tau subunits [Bacteroides sp. 3_1_23]
 gi|298517314|gb|EFI41195.1| DNA polymerase III, gamma and tau subunits [Bacteroides sp. 3_1_23]
          Length = 621

 Score = 40.0 bits (92), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 71/316 (22%), Positives = 111/316 (35%), Gaps = 64/316 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP T E   GQ    + LK  I   K     L H  LF GP G+GKTT A++ A+ +   
Sbjct: 12  RPSTFESVVGQRALTTTLKNAIATQK-----LAHAYLFCGPRGVGKTTCARIFAKTINCM 66

Query: 82  FRSTSGPVIAKAGDLAAL----LTNLEDRDVLFIDEIHRLSIIVEEILYP---------- 127
             +  G    +     A       N+ + D    + +  +  +VE++  P          
Sbjct: 67  TPTADGEACNQCESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYI 126

Query: 128 -------AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                  +   F   L   E P   ++         I ATT    +   +  R  I    
Sbjct: 127 IDEVHMLSASAFNAFLKTLEEPPRHAI--------FILATTEKHKILPTILSRCQI-YDF 177

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA--EVAHA 238
           N   +ED    +   A   G+    EA   IAM++ G  R A  +  +V  F    + + 
Sbjct: 178 NRISVEDTVNHLSYVASKEGITAEPEALNVIAMKADGGMRDALSIFDQVVSFTGGNITYK 237

Query: 239 KTI-------------------TREIADAALLRLAIDKMGFDQLDLRYLTMIARNF---- 275
             I                     +++DA LL   I   GFD     ++T ++ +F    
Sbjct: 238 SVIDNLNVLDYEYYFRLTDCFLENKVSDALLLFNDILNKGFD--GSHFITGLSSHFRDLL 295

Query: 276 -GGGPVGIETISAGLS 290
            G  PV +  +  G S
Sbjct: 296 VGKDPVTLPLLEVGAS 311


>gi|296195631|ref|XP_002745475.1| PREDICTED: spermatogenesis-associated protein 5, partial
           [Callithrix jacchus]
          Length = 617

 Score = 40.0 bits (92), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALL------TNLEDRDV 108
           VL  GPPG GKT +A+ VA E+G      +GP +I+K  G+  A L        L    +
Sbjct: 362 VLLYGPPGTGKTMIARAVASEVGAYVSVINGPEIISKFYGETEAKLRQIFAEATLRHPSI 421

Query: 109 LFIDEIHRLS 118
           +FIDE+  L 
Sbjct: 422 IFIDELDALC 431


>gi|291540574|emb|CBL13685.1| ATP-dependent metalloprotease FtsH [Roseburia intestinalis XB6B4]
          Length = 524

 Score = 40.0 bits (92), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E  V F S SG    +      A  +  L    +++   +
Sbjct: 121 VLLVGPPGTGKTMLAKAVAGESNVPFFSMSGSEFVEMFVGMGASKVRDLFGQAKEKAPCI 180

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 181 VFIDEI 186


>gi|307729639|ref|YP_003906863.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           sp. CCGE1003]
 gi|323526046|ref|YP_004228199.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           sp. CCGE1001]
 gi|307584174|gb|ADN57572.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           sp. CCGE1003]
 gi|323383048|gb|ADX55139.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           sp. CCGE1001]
          Length = 423

 Score = 40.0 bits (92), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104
           ++L +GP G GKT LAQ +AR L V F       + +AG +          LL N     
Sbjct: 116 NILLIGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEV 175

Query: 105 ---DRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 176 DKAQRGIVYIDEIDKIS 192


>gi|257438589|ref|ZP_05614344.1| cell division protein FtsH [Faecalibacterium prausnitzii A2-165]
 gi|257198958|gb|EEU97242.1| cell division protein FtsH [Faecalibacterium prausnitzii A2-165]
          Length = 608

 Score = 40.0 bits (92), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--V 108
           +L VGPPG GKT LA+ VA E  V F S SG    +      A  +  L    +++   +
Sbjct: 203 ILLVGPPGTGKTMLAKAVAGESNVPFFSISGSEFVEMFVGMGASKVRDLFKQAKEKAPCI 262

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 263 VFIDEI 268


>gi|240080536|ref|ZP_04725079.1| ATP-dependent protease ATP-binding subunit ClpX [Neisseria
           gonorrhoeae FA19]
 gi|240123698|ref|ZP_04736654.1| ATP-dependent protease ATP-binding subunit ClpX [Neisseria
           gonorrhoeae PID332]
 gi|240128399|ref|ZP_04741060.1| ATP-dependent protease ATP-binding subunit ClpX [Neisseria
           gonorrhoeae SK-93-1035]
 gi|268596668|ref|ZP_06130835.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae
           FA19]
 gi|268682330|ref|ZP_06149192.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae
           PID332]
 gi|268686798|ref|ZP_06153660.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268550456|gb|EEZ45475.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae
           FA19]
 gi|268622614|gb|EEZ55014.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae
           PID332]
 gi|268627082|gb|EEZ59482.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 414

 Score = 40.0 bits (92), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +AR+L V F       + +AG    D+  ++T L        
Sbjct: 114 NILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDV 173

Query: 104 --EDRDVLFIDEIHRLS 118
                 +++IDEI ++S
Sbjct: 174 EKAQHGIVYIDEIDKIS 190


>gi|221116859|ref|XP_002155743.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 500

 Score = 40.0 bits (92), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 35/69 (50%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRS-TSGPVIAKA-GDLAAL------LTNLEDRDV 108
           VL VGPPG GKT LA+ VA E G  F + TS  + +K  G+   L      +        
Sbjct: 254 VLMVGPPGTGKTMLAKAVATECGTTFFNVTSSTLTSKYRGESEKLVRLLFEMARFYAPST 313

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 314 IFIDEIDSL 322


>gi|210623232|ref|ZP_03293671.1| hypothetical protein CLOHIR_01621 [Clostridium hiranonis DSM 13275]
 gi|210153769|gb|EEA84775.1| hypothetical protein CLOHIR_01621 [Clostridium hiranonis DSM 13275]
          Length = 668

 Score = 40.0 bits (92), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           +L VGPPG GKT L++ VA E GV F S SG
Sbjct: 195 ILMVGPPGTGKTFLSKAVAGEAGVPFFSISG 225


>gi|254468529|ref|ZP_05081935.1| ATP-dependent Clp protease ATP-binding subunit ClpA [beta
           proteobacterium KB13]
 gi|207087339|gb|EDZ64622.1| ATP-dependent Clp protease ATP-binding subunit ClpA [beta
           proteobacterium KB13]
          Length = 750

 Score = 40.0 bits (92), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 82/181 (45%), Gaps = 35/181 (19%)

Query: 9   SRNVSQEDADISLLR--PRTLEEFT-GQVEACSNLKVFIEAAKA----RAEALDHVLFVG 61
           S+N++Q+D  +S+LR   R L+    GQ EA + L   I+ A++      + +   +F G
Sbjct: 427 SKNINQDD--LSMLRNLDRDLKAIIFGQDEAINKLSTAIKMARSGLLSDNKPIGSFMFSG 484

Query: 62  PPGLGKTTLAQVVARELGVNF-----------RSTSGPVIAKAG----DLAALLTNLEDR 106
           P G+GKT +A+ +A  LG+              + S  + A  G    D    LT   ++
Sbjct: 485 PTGVGKTEVAKQLAYTLGIELIRIDMSEFMERHAVSKLIGAPPGYVGFDQGGTLTESINK 544

Query: 107 D---VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
           +   VL +DEI +    V  IL   M++       G    +   KI+    TLI  TT V
Sbjct: 545 NPYAVLLLDEIEKAHPDVHNILLQIMDN-------GFLTDSNGRKIDFRNVTLI-MTTNV 596

Query: 164 G 164
           G
Sbjct: 597 G 597


>gi|148258950|ref|YP_001243535.1| cell division protein [Bradyrhizobium sp. BTAi1]
 gi|146411123|gb|ABQ39629.1| membrane protease FtsH catalytic subunit [Bradyrhizobium sp. BTAi1]
          Length = 630

 Score = 40.0 bits (92), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL VGPPG GKT LA+ +A E GV F S +G    +   G  AA + +L ++       +
Sbjct: 198 VLLVGPPGTGKTMLARAIAGEAGVPFLSINGSEFVEMFVGVGAARVRDLFEQARSMAPCI 257

Query: 109 LFIDEIHRL 117
           +FIDE+  L
Sbjct: 258 IFIDELDAL 266


>gi|150399700|ref|YP_001323467.1| proteasome-activating nucleotidase [Methanococcus vannielii SB]
 gi|166199294|sp|A6UQT3|PAN_METVS RecName: Full=Proteasome-activating nucleotidase; Short=PAN;
           AltName: Full=Proteasomal ATPase; AltName:
           Full=Proteasome regulatory ATPase; AltName:
           Full=Proteasome regulatory particle
 gi|150012403|gb|ABR54855.1| 26S proteasome subunit P45 family [Methanococcus vannielii SB]
          Length = 407

 Score = 40.0 bits (92), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 8/89 (8%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL------EDRDV 108
           VL  GPPG GKT LA+ VARE   +F    G  + K   G+ A L+ ++      +   +
Sbjct: 185 VLLYGPPGTGKTLLAKAVARETNASFVRVVGSELVKKFIGEGAKLVRDVFKLAKEKSPCI 244

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           +FIDEI  ++    E L     + Q  LM
Sbjct: 245 IFIDEIDAVASKRTESLTGGDREVQRTLM 273


>gi|121611286|ref|YP_999093.1| ATP-dependent protease ATP-binding subunit ClpX [Verminephrobacter
           eiseniae EF01-2]
 gi|121555926|gb|ABM60075.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Verminephrobacter eiseniae EF01-2]
          Length = 447

 Score = 40.0 bits (92), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 14/78 (17%)

Query: 55  DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL----------- 103
            ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+           
Sbjct: 142 SNILLIGPTGSGKTLLAQTLARMLDVPFVMADATTLTEAGYVGEDVENIIQKLLQSCGYK 201

Query: 104 ---EDRDVLFIDEIHRLS 118
                R +++IDEI ++S
Sbjct: 202 VEPAQRGIVYIDEIDKIS 219


>gi|76581159|gb|ABA50634.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           pseudomallei 1710b]
          Length = 466

 Score = 40.0 bits (92), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104
           ++L +GP G GKT LAQ +AR L V F       + +AG +          LL N     
Sbjct: 159 NILLIGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEV 218

Query: 105 ---DRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 219 EKAQRGIVYIDEIDKIS 235


>gi|53719040|ref|YP_108026.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia
           pseudomallei K96243]
 gi|52209454|emb|CAH35405.1| ATP-dependent Clp protease ATP-binding subunit [Burkholderia
           pseudomallei K96243]
          Length = 430

 Score = 40.0 bits (92), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104
           ++L +GP G GKT LAQ +AR L V F       + +AG +          LL N     
Sbjct: 123 NILLIGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEV 182

Query: 105 ---DRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 183 EKAQRGIVYIDEIDKIS 199


>gi|21230440|ref|NP_636357.1| ATP-dependent protease ATP-binding subunit ClpX [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
 gi|66769566|ref|YP_244328.1| ATP-dependent protease ATP-binding subunit ClpX [Xanthomonas
           campestris pv. campestris str. 8004]
 gi|188992774|ref|YP_001904784.1| ATP-dependent protease ATP-binding subunit ClpX [Xanthomonas
           campestris pv. campestris str. B100]
 gi|23813857|sp|Q8PBY5|CLPX_XANCP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|81304479|sp|Q4URL5|CLPX_XANC8 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|229485950|sp|B0RTF5|CLPX_XANCB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|21112002|gb|AAM40281.1| ATP-dependent Clp protease ATP binding subunit [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
 gi|66574898|gb|AAY50308.1| ATP-dependent Clp protease ATP binding subunit [Xanthomonas
           campestris pv. campestris str. 8004]
 gi|167734534|emb|CAP52744.1| ATP-dependent Clp protease ATP binding subunit [Xanthomonas
           campestris pv. campestris]
          Length = 428

 Score = 40.0 bits (92), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 58/133 (43%), Gaps = 29/133 (21%)

Query: 15  EDADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAE----------ALDHVLF 59
           + A  SL +PR + E       GQ+ A   L V +     R E          A  ++L 
Sbjct: 60  QSARSSLPKPREILEVLDQYVIGQLRAKRTLAVAVYNHYKRIESRSKNDEVELAKSNILL 119

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDV---- 108
           VGP G GKT LA+ +AR L V F       + +AG +   + N+        D DV    
Sbjct: 120 VGPTGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQ 179

Query: 109 ---LFIDEIHRLS 118
              ++IDEI ++S
Sbjct: 180 QGIVYIDEIDKIS 192


>gi|152964507|ref|YP_001360291.1| ATP-dependent metalloprotease FtsH [Kineococcus radiotolerans
           SRS30216]
 gi|151359024|gb|ABS02027.1| ATP-dependent metalloprotease FtsH [Kineococcus radiotolerans
           SRS30216]
          Length = 659

 Score = 40.0 bits (92), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 4/58 (6%)

Query: 34  VEACSNLKVFIEAAK----ARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VE    +K F++ +       A+    VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 176 VEELHEIKEFLQDSSKFLAVGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISG 233


>gi|323452123|gb|EGB07998.1| hypothetical protein AURANDRAFT_71725 [Aureococcus anophagefferens]
          Length = 1039

 Score = 40.0 bits (92), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           V+  GPPG GKT LA+ VA E GV F STSG
Sbjct: 198 VILEGPPGTGKTLLARAVAGEAGVPFISTSG 228


>gi|321461635|gb|EFX72665.1| hypothetical protein DAPPUDRAFT_308117 [Daphnia pulex]
          Length = 389

 Score = 40.0 bits (92), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 56/124 (45%), Gaps = 23/124 (18%)

Query: 8   LSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV--------L 58
           L  N+S ED  D+      T  E  G  E    L+  IE      E    V        L
Sbjct: 118 LVYNMSHEDPGDV------TYSEIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCL 171

Query: 59  FVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA-GDLAALLTNLED--RD----VLF 110
             GPPG GKT LA+ VA +L  NF +  S  ++ K  G+ A L+  + +  RD    ++F
Sbjct: 172 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARDHQPCIIF 231

Query: 111 IDEI 114
           +DEI
Sbjct: 232 MDEI 235


>gi|269976860|ref|ZP_06183834.1| ATP-dependent metallopeptidase HflB [Mobiluncus mulieris 28-1]
 gi|306819509|ref|ZP_07453216.1| ATP-dependent metalloprotease FtsH [Mobiluncus mulieris ATCC 35239]
 gi|269934691|gb|EEZ91251.1| ATP-dependent metallopeptidase HflB [Mobiluncus mulieris 28-1]
 gi|304647801|gb|EFM45119.1| ATP-dependent metalloprotease FtsH [Mobiluncus mulieris ATCC 35239]
          Length = 765

 Score = 40.0 bits (92), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 223 VLLYGPPGTGKTLLAKAVAGEAGVPFFSMSG 253


>gi|119953249|ref|YP_945458.1| DNA polymerase III subunits gamma and tau [Borrelia turicatae
           91E135]
 gi|119862020|gb|AAX17788.1| DNA polymerase III subunit gamma/tau [Borrelia turicatae 91E135]
          Length = 548

 Score = 40.0 bits (92), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 87/225 (38%), Gaps = 29/225 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPR L    GQ      LK  IE  K  A A    +F GP G+GKT+ A+  AR L    
Sbjct: 12  RPRDLNSLEGQDFVVETLKHSIENNKI-ANAY---IFSGPRGVGKTSSARAFARCLNCKI 67

Query: 83  RSTSGPVIAKAGDLAAL--LTNLEDRDVLFIDEIHRLSI-----IVEEILYPAMEDFQLD 135
               GP I       +   + N    D++ ID     S+     I EEI++P        
Sbjct: 68  ----GPTIMPCDMCFSCKSIDNDNKLDIIEIDGASNTSVQDVKQIKEEIMFPPASSRYRV 123

Query: 136 LMVGEGPSARSVKINL---------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNF--YE 184
            ++ E     +   N          S    I ATT V  L + ++ R       NF    
Sbjct: 124 YIIDEVHMLSNSAFNALLKTIEEPPSYIVFIFATTEVHKLPDTIKSRCQ---HFNFRLLP 180

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           ++ +  +++       +   DEA   IA +S G+ R A  L  ++
Sbjct: 181 LDKVYEMLKHVCLEDNIKYEDEALRWIAYKSGGSVRDAYTLFDQI 225


>gi|153808560|ref|ZP_01961228.1| hypothetical protein BACCAC_02855 [Bacteroides caccae ATCC 43185]
 gi|149128882|gb|EDM20099.1| hypothetical protein BACCAC_02855 [Bacteroides caccae ATCC 43185]
          Length = 618

 Score = 40.0 bits (92), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 70/316 (22%), Positives = 112/316 (35%), Gaps = 64/316 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP T E   GQ    + LK  I   K     L H  LF GP G+GKTT A++ A+ +   
Sbjct: 12  RPSTFESVVGQRALTTTLKNAIATQK-----LAHAYLFCGPRGVGKTTCARIFAKTINCM 66

Query: 82  FRSTSGPVIAKAGDLAAL----LTNLEDRDVLFIDEIHRLSIIVEEILYP---------- 127
             +  G    +     A       N+ + D    + +  +  +VE++  P          
Sbjct: 67  TPTADGEACNQCESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYI 126

Query: 128 -------AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                  +   F   L   E P   ++         I ATT    +   +  R  I    
Sbjct: 127 IDEVHMLSASAFNAFLKTLEEPPRHAI--------FILATTEKHKILPTILSRCQI-YDF 177

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA--EVAHA 238
           N   +ED    +   A   G++   EA   IAM++ G  R A  +  +V  F    + + 
Sbjct: 178 NRISVEDTVNHLSYVASKEGISAEPEALNVIAMKADGGMRDALSIFDQVVSFTGGNITYK 237

Query: 239 KTI-------------------TREIADAALLRLAIDKMGFDQLDLRYLTMIARNF---- 275
             I                     +++DA LL   +   GFD     ++T ++ +F    
Sbjct: 238 SVIDNLNVLDYEYYFRLTDCFLANKVSDALLLFNDVLNKGFD--GSHFITGLSSHFRDLL 295

Query: 276 -GGGPVGIETISAGLS 290
            G  PV +  +  G S
Sbjct: 296 VGKDPVTLPLLEVGAS 311


>gi|119222481|gb|ABL62438.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
          Length = 198

 Score = 40.0 bits (92), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +AR L V F       + +AG    D+  ++ NL        
Sbjct: 2   NILLLGPTGSGKTLLAQTLARILNVPFTIADATCLTEAGYVGEDVENIIVNLLQAADHDI 61

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI +++
Sbjct: 62  ERAQRGIVYIDEIDKIA 78


>gi|99081932|ref|YP_614086.1| ATP-dependent Clp protease ATP-binding subunit clpA [Ruegeria sp.
           TM1040]
 gi|99038212|gb|ABF64824.1| ATP-dependent Clp protease ATP-binding subunit clpA [Ruegeria sp.
           TM1040]
          Length = 792

 Score = 40.0 bits (92), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 71/161 (44%), Gaps = 23/161 (14%)

Query: 10  RNVSQEDADISLLRPRTLEEFT-GQVEACSNLKVFIEAAKA----RAEALDHVLFVGPPG 64
           +NVS++DA++      +L+    GQ  A   L   I+ A+A      + + + LF GP G
Sbjct: 468 KNVSKDDAEVLKDLEASLKRVVFGQDAAIDALSSAIKLARAGLREPEKPIGNYLFAGPTG 527

Query: 65  LGKTTLAQVVARELGVNF---------------RSTSGPVIAKAGDLAALLTNLEDRD-- 107
           +GKT +A+ +A  LGV                 R    P      D   LLT+  D+   
Sbjct: 528 VGKTEVAKQLADTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGVDQHPH 587

Query: 108 -VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSV 147
            VL +DEI +    V  IL   M++ QL    G   + R+V
Sbjct: 588 CVLLLDEIEKAHPDVFNILLQVMDNGQLTDHNGRTVNFRNV 628


>gi|42523611|ref|NP_968991.1| ATP-dependent protease LA [Bdellovibrio bacteriovorus HD100]
 gi|81617154|sp|Q6ML73|LON1_BDEBA RecName: Full=Lon protease 1; AltName: Full=ATP-dependent protease
           La 1
 gi|39575817|emb|CAE79984.1| ATP-dependent protease LA [Bdellovibrio bacteriovorus HD100]
          Length = 793

 Score = 40.0 bits (92), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 82/193 (42%), Gaps = 50/193 (25%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           ++F+GPPG+GKT+L + +AR LG  + R   G V   A              G + A + 
Sbjct: 350 LMFIGPPGVGKTSLGKSIARALGKKYVRVALGGVRDDAEIRGHRRTYIGALPGRIIAGIK 409

Query: 102 NLEDRDVLFI-DEIHRLS--------IIVEEILYP----AMEDFQLDLMVGEGPSARSVK 148
              + D +FI DEI +L+          + E+L P      +D  LD             
Sbjct: 410 KAGENDPVFILDEIDKLTRGFGGDPASAMLEVLDPEQNNTFQDHYLD-----------TP 458

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV----------QRGAKL 198
            +LS+   IA    +  +  PL DR  + I L+ Y +++ + I           + G + 
Sbjct: 459 FDLSKVFFIATANSLEGIPLPLLDRMEV-IDLSGYTVDEKRQIARSHLWPKQLKEHGLEE 517

Query: 199 TGLAVTDEAACEI 211
             L +TD+A  ++
Sbjct: 518 NQLQITDQALTKL 530


>gi|68471103|ref|XP_720328.1| hypothetical protein CaO19.7035 [Candida albicans SC5314]
 gi|77022536|ref|XP_888712.1| hypothetical protein CaO19_7035 [Candida albicans SC5314]
 gi|46442191|gb|EAL01482.1| hypothetical protein CaO19.7035 [Candida albicans SC5314]
 gi|76573525|dbj|BAE44609.1| hypothetical protein [Candida albicans]
 gi|238883252|gb|EEQ46890.1| activator 1 41 kDa subunit [Candida albicans WO-1]
          Length = 363

 Score = 40.0 bits (92), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP++L + + Q      +KV  +  K+    L H+LF GPPG GKT+    +A+EL
Sbjct: 31 RPKSLNDVSSQEHT---IKVLTQTIKSGN--LPHMLFYGPPGTGKTSTILALAKEL 81


>gi|326676750|ref|XP_003200668.1| PREDICTED: peroxisome biogenesis factor 1-like [Danio rerio]
          Length = 1237

 Score = 40.0 bits (92), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  G PG GKT LA  VA+E G+NF S  GP
Sbjct: 833 VLLYGAPGTGKTLLAGAVAKESGMNFISIKGP 864


>gi|311346940|gb|ADP90395.1| mitochondrial lon protease-like protein [Homo sapiens]
          Length = 959

 Score = 40.0 bits (92), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 87/207 (42%), Gaps = 33/207 (15%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLA 71
           S E+ D++  +    E+  G  +    +  FI  ++ R      +L F GPPG+GKT++A
Sbjct: 474 SNENLDLARAQAVLEEDHYGMEDVKKRILEFIAVSQLRGSTQGKILCFYGPPGVGKTSIA 533

Query: 72  QVVARELGVN-FRSTSGP--------------VIAKAGDLAALLTNLEDRD-VLFIDEIH 115
           + +AR L    FR + G               V A  G +   L   +  + ++ IDE+ 
Sbjct: 534 RSIARALNREYFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLILIDEVD 593

Query: 116 RL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           ++        S  + E+L P      LD  +        V ++LS+   I        + 
Sbjct: 594 KIGRGYQGDPSSALLELLDPEQNANFLDHYL-------DVPVDLSKVLFICTANVTDTIP 646

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQR 194
            PL+DR  + I ++ Y  ++   I +R
Sbjct: 647 EPLRDRMEM-INVSGYVAQEKLAIAER 672


>gi|307701252|ref|ZP_07638274.1| ATP-dependent metallopeptidase HflB [Mobiluncus mulieris FB024-16]
 gi|307613646|gb|EFN92893.1| ATP-dependent metallopeptidase HflB [Mobiluncus mulieris FB024-16]
          Length = 765

 Score = 40.0 bits (92), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 223 VLLYGPPGTGKTLLAKAVAGEAGVPFFSMSG 253


>gi|307266098|ref|ZP_07547643.1| PTS system transcriptional activator [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306918880|gb|EFN49109.1| PTS system transcriptional activator [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 971

 Score = 40.0 bits (92), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 71/169 (42%), Gaps = 40/169 (23%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKARA----EALDHVLFVGPPGLGKTTLAQVV---ARE 77
           ++L  F   + +  +LKV I  AKA        L H L VGP G GK+ LA+ +   A E
Sbjct: 125 KSLLSFKEIIGSEGSLKVQISLAKAAVLYPPHGL-HTLIVGPSGSGKSQLAEAMYNYAIE 183

Query: 78  LGVNFRSTSGPVIAKAGDLA-------------------------ALLTNLEDRDVLFID 112
            G  F   +  V+    D A                         A L    D  +LF+D
Sbjct: 184 SG-KFNENAPFVVFNCADYADNPQLLMAQLFGYVKGAFTGADTAKAGLVEKADGGILFLD 242

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATT 161
           E+HRL    +EIL+  ++  +   + GE  S R  +I      LIAATT
Sbjct: 243 EVHRLPSEGQEILFYLLDKGKFRRL-GETESTREAQI-----MLIAATT 285


>gi|300916540|ref|ZP_07133270.1| ATP-dependent metallopeptidase HflB [Escherichia coli MS 115-1]
 gi|300416164|gb|EFJ99474.1| ATP-dependent metallopeptidase HflB [Escherichia coli MS 115-1]
          Length = 416

 Score = 40.0 bits (92), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 45/92 (48%), Gaps = 8/92 (8%)

Query: 34  VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK- 92
           VE    LK   E  +  A     VL VGPPG GKT LA+ VA E  V F S SG    + 
Sbjct: 170 VEIVDFLKNPQEYGRLGARIPKGVLLVGPPGTGKTLLAKAVAGEAAVPFFSISGSEFVEM 229

Query: 93  -AGDLAALLTNLEDR------DVLFIDEIHRL 117
             G  AA + +L ++       ++FIDE+  L
Sbjct: 230 FVGVGAARVRDLFEQARGQAPAIIFIDELDAL 261


>gi|297849202|ref|XP_002892482.1| 26S proteasome aaa-ATPase subunit rpt5B [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338324|gb|EFH68741.1| 26S proteasome aaa-ATPase subunit rpt5B [Arabidopsis lyrata subsp.
           lyrata]
          Length = 406

 Score = 40.0 bits (92), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 6/64 (9%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAA------LLTNLEDRDVLF 110
           VL  GPPG GKT +A+  A +    F   +GP +   GD A       LL   +   ++F
Sbjct: 198 VLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLMFIGDGAKLVRDAFLLAKEKSPCIIF 257

Query: 111 IDEI 114
           IDEI
Sbjct: 258 IDEI 261


>gi|283046720|ref|NP_001164306.1| peroxisome biogenesis factor 1 [Danio rerio]
 gi|154200022|gb|ABS71030.1| peroxin 1 [Danio rerio]
          Length = 1237

 Score = 40.0 bits (92), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  G PG GKT LA  VA+E G+NF S  GP
Sbjct: 833 VLLYGAPGTGKTLLAGAVAKESGMNFISIKGP 864


>gi|254704396|ref|ZP_05166224.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella suis bv.
           3 str. 686]
 gi|261755074|ref|ZP_05998783.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella suis
           bv. 3 str. 686]
 gi|261744827|gb|EEY32753.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella suis
           bv. 3 str. 686]
          Length = 424

 Score = 40.0 bits (92), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L VGP G GKT LAQ +AR + V F       + +AG +   + N+         
Sbjct: 112 AKSNILLVGPTGCGKTYLAQTLARIIDVPFIMADATTLTEAGYVGEDVENIILKLLQAAD 171

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDE+ ++S
Sbjct: 172 YNVERAQRGIVYIDEVDKIS 191


>gi|261205028|ref|XP_002627251.1| DNA replication factor C subunit Rfc2 [Ajellomyces dermatitidis
          SLH14081]
 gi|239592310|gb|EEQ74891.1| DNA replication factor C subunit Rfc2 [Ajellomyces dermatitidis
          SLH14081]
 gi|327348452|gb|EGE77309.1| DNA replication factor C subunit Rfc2 [Ajellomyces dermatitidis
          ATCC 18188]
          Length = 389

 Score = 40.0 bits (92), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+TL++   Q    + L+  ++A+      L H+LF GPPG GKT+    +A+ L
Sbjct: 40 RPKTLDDVASQEHTVTVLQRTLQASN-----LPHMLFYGPPGTGKTSTILALAKSL 90


>gi|225425863|ref|XP_002266185.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 825

 Score = 40.0 bits (92), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 19/31 (61%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           L  GPPG GKT +A+ VA E G NF    GP
Sbjct: 592 LLYGPPGCGKTLIAKAVANEAGANFIHIKGP 622


>gi|254526680|ref|ZP_05138732.1| cell division protein FtsH2 [Prochlorococcus marinus str. MIT 9202]
 gi|221538104|gb|EEE40557.1| cell division protein FtsH2 [Prochlorococcus marinus str. MIT 9202]
          Length = 584

 Score = 40.0 bits (92), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL +GPPG GKT LA+ +A E GV F S S        V   A  +  L +  +++   +
Sbjct: 170 VLLIGPPGTGKTLLAKAIAGESGVPFLSISASEFVELFVGVGASRVRDLFSKAKEKSPCI 229

Query: 109 LFIDEIHRL 117
           +FIDEI  +
Sbjct: 230 IFIDEIDSI 238


>gi|209521457|ref|ZP_03270165.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           sp. H160]
 gi|209498113|gb|EDZ98260.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           sp. H160]
          Length = 423

 Score = 40.0 bits (92), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104
           ++L +GP G GKT LAQ +AR L V F       + +AG +          LL N     
Sbjct: 116 NILLIGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEV 175

Query: 105 ---DRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 176 DKAQRGIVYIDEIDKIS 192


>gi|195146352|ref|XP_002014150.1| GL24523 [Drosophila persimilis]
 gi|194103093|gb|EDW25136.1| GL24523 [Drosophila persimilis]
          Length = 677

 Score = 40.0 bits (92), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108
           VL VGPPG GKT LA+ VA E G  F + S   +     G+   L      +        
Sbjct: 434 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPST 493

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 494 IFIDEIDAL 502


>gi|241663133|ref|YP_002981493.1| ATP-dependent protease ATP-binding subunit ClpX [Ralstonia
           pickettii 12D]
 gi|309781949|ref|ZP_07676680.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ralstonia sp.
           5_7_47FAA]
 gi|240865160|gb|ACS62821.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ralstonia
           pickettii 12D]
 gi|308919293|gb|EFP64959.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ralstonia sp.
           5_7_47FAA]
          Length = 424

 Score = 40.0 bits (92), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104
           ++L +GP G GKT LAQ +AR L V F       + +AG +          LL N     
Sbjct: 117 NILLIGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEV 176

Query: 105 ---DRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 177 DKAQRGIVYIDEIDKIS 193


>gi|149698244|ref|XP_001502977.1| PREDICTED: spermatogenesis associated 5 isoform 1 [Equus caballus]
          Length = 894

 Score = 40.0 bits (92), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALL------TNLEDRDV 108
           VL  GPPG GKT +A+ VA E+G      +GP +I+K  G+  A L        L    +
Sbjct: 391 VLLYGPPGTGKTMIARAVANEVGAYVSIINGPEIISKFYGETEARLRQIFAEATLRHPSI 450

Query: 109 LFIDEIHRLS 118
           +FIDE+  L 
Sbjct: 451 IFIDELDALC 460



 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 16/32 (50%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG  KT +A+ +A E G+NF +  GP
Sbjct: 665 VLLYGPPGCSKTMIAKALANESGLNFLAIKGP 696


>gi|186475777|ref|YP_001857247.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia
           phymatum STM815]
 gi|238691290|sp|B2JGL6|CLPX_BURP8 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|184192236|gb|ACC70201.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           phymatum STM815]
          Length = 423

 Score = 40.0 bits (92), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104
           ++L +GP G GKT LAQ +AR L V F       + +AG +          LL N     
Sbjct: 116 NILLIGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEV 175

Query: 105 ---DRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 176 DKAQRGIVYIDEIDKIS 192


>gi|119719222|ref|YP_919717.1| AAA family ATPase, CDC48 subfamily protein [Thermofilum pendens Hrk
           5]
 gi|119524342|gb|ABL77714.1| AAA family ATPase, CDC48 subfamily [Thermofilum pendens Hrk 5]
          Length = 732

 Score = 40.0 bits (92), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDR------DV 108
           +L  GPPG GKT LA+ VA E   NF S  GP V +K  G+    +  L  +       +
Sbjct: 493 ILLYGPPGTGKTLLAKAVATESEANFVSIKGPEVYSKWVGESERAIRELFRKARQVAPSI 552

Query: 109 LFIDEIHRLS 118
           +FIDEI  L+
Sbjct: 553 IFIDEIDALA 562



 Score = 37.7 bits (86), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 8/76 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL--EDRD----V 108
           +L  GPPG GKT LA+ VA E    F + +GP I     G+    L  +  E ++    +
Sbjct: 220 ILLYGPPGTGKTLLAKAVANETDAYFIAINGPEIMSKFYGESEQRLREIFEEAKEHAPAI 279

Query: 109 LFIDEIHRLSIIVEEI 124
           +FIDEI  ++   EE+
Sbjct: 280 IFIDEIDAIAPKREEV 295


>gi|328850881|gb|EGG00041.1| AAA ATPase [Melampsora larici-populina 98AG31]
          Length = 745

 Score = 40.0 bits (92), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 479 ILLWGPPGCGKTLLAKAVANESQANFISVKGP 510



 Score = 37.0 bits (84), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           +L  GPPG GKT LA  ++ +LG+   + S   I    +G+    + ++ D+       +
Sbjct: 142 LLLCGPPGCGKTMLASAISNQLGITLINVSSTSIVSGMSGESEKAIRDIFDQATKQAPCL 201

Query: 109 LFIDEIHRLS 118
           LFIDEI  ++
Sbjct: 202 LFIDEIDAIT 211


>gi|329962190|ref|ZP_08300197.1| ATPase family protein [Bacteroides fluxus YIT 12057]
 gi|328530477|gb|EGF57351.1| ATPase family protein [Bacteroides fluxus YIT 12057]
          Length = 324

 Score = 40.0 bits (92), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 115/288 (39%), Gaps = 71/288 (24%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKAGDLAALLTNLEDR-------- 106
           HVL  G PG+ KT LA++VAR +  +F R    P +  +  L   + N+++         
Sbjct: 48  HVLIEGVPGVAKTLLARLVARLIDADFSRIQFTPDLMPSDVLGTTVFNMKNSEFDFHRGP 107

Query: 107 ---DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
              DV+ +DEI+R     +  L+  ME+ Q  +   +G + R   +    +T++A     
Sbjct: 108 VFADVVLVDEINRAPAKTQAALFEVMEERQASI---DGTTYRMGAL----YTILAT---- 156

Query: 164 GLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAG 223
               NP++                     Q G      A  D    +I M   G P +  
Sbjct: 157 ---QNPVE---------------------QEGTYKLPEAQLDRFLMKITM---GYPSVDE 189

Query: 224 R--LLRRVRDFAEVAHAKTITREIADAALLRL--AIDKMGFDQLDLRYLTMIARN----- 274
              +L R    A +   + IT  I  A LL L   +D++  D+  LRY+ +I        
Sbjct: 190 EVDILERHHTNASLVKLENITPVITKAELLELRRLMDRVFVDRTLLRYIALIVEQTRTSK 249

Query: 275 ---FGGGP-VGIETISA----GLSEPRDAI--EDL--IEPYMIQQGFI 310
               G  P   +  + A     L + RD +  ED+  + PY++Q   I
Sbjct: 250 SVYLGASPRASVAMLQASKAYALLQGRDFVTPEDIKSVAPYVLQHRLI 297


>gi|325675047|ref|ZP_08154734.1| ATP-dependent metalloprotease FtsH [Rhodococcus equi ATCC 33707]
 gi|325554633|gb|EGD24308.1| ATP-dependent metalloprotease FtsH [Rhodococcus equi ATCC 33707]
          Length = 777

 Score = 40.0 bits (92), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 33/59 (55%), Gaps = 6/59 (10%)

Query: 34  VEACSNLKVFIEAAKARAEAL-----DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VE    +K F++   AR +AL       VL  GPPG GKT LA+ VA E GV F + SG
Sbjct: 175 VEELYEIKDFLQN-PARYQALGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISG 232


>gi|239999117|ref|ZP_04719041.1| ATP-dependent protease ATP-binding subunit ClpX [Neisseria
           gonorrhoeae 35/02]
 gi|240113095|ref|ZP_04727585.1| ATP-dependent protease ATP-binding subunit ClpX [Neisseria
           gonorrhoeae MS11]
 gi|268594953|ref|ZP_06129120.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae
           35/02]
 gi|268599181|ref|ZP_06133348.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae
           MS11]
 gi|268548342|gb|EEZ43760.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae
           35/02]
 gi|268583312|gb|EEZ47988.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae
           MS11]
          Length = 414

 Score = 40.0 bits (92), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +AR+L V F       + +AG    D+  ++T L        
Sbjct: 114 NILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDV 173

Query: 104 --EDRDVLFIDEIHRLS 118
                 +++IDEI ++S
Sbjct: 174 EKAQHGIVYIDEIDKIS 190


>gi|239611536|gb|EEQ88523.1| DNA replication factor C subunit Rfc2 [Ajellomyces dermatitidis
          ER-3]
          Length = 389

 Score = 40.0 bits (92), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+TL++   Q    + L+  ++A+      L H+LF GPPG GKT+    +A+ L
Sbjct: 40 RPKTLDDVASQEHTVTVLQRTLQASN-----LPHMLFYGPPGTGKTSTILALAKSL 90


>gi|227538075|ref|ZP_03968124.1| ATP-dependent protease ATP-binding subunit [Sphingobacterium
           spiritivorum ATCC 33300]
 gi|300772704|ref|ZP_07082574.1| ATP-dependent Clp protease ATP-binding subunit [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|227242151|gb|EEI92166.1| ATP-dependent protease ATP-binding subunit [Sphingobacterium
           spiritivorum ATCC 33300]
 gi|300761007|gb|EFK57833.1| ATP-dependent Clp protease ATP-binding subunit [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 416

 Score = 40.0 bits (92), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           +++ VG  G GKT LA+ VA+ L V F      V+ +AG    D+ ++LT L        
Sbjct: 112 NLIIVGETGTGKTLLAKTVAKILNVPFSIVDATVLTEAGYVGEDVESILTRLLQAADYDV 171

Query: 104 --EDRDVLFIDEIHRLS 118
              +R +++IDEI +++
Sbjct: 172 AAAERGIIYIDEIDKIA 188


>gi|212696597|ref|ZP_03304725.1| hypothetical protein ANHYDRO_01137 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676328|gb|EEB35935.1| hypothetical protein ANHYDRO_01137 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 402

 Score = 40.0 bits (92), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 30/134 (22%)

Query: 15  EDADISLLRPRTLEEFTGQV-----EACSNLKVFIEAAKARAEA-----------LDHVL 58
           ++ DI L +PR ++E+  Q       A   L V +     R  +             ++L
Sbjct: 53  KNMDIELAKPREIKEYLDQYVIQQEMAKKTLSVSVYNHYKRINSNYDKDDGVELQKSNIL 112

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRD---- 107
            +GP G GKT LAQ +A++L V F       + +AG +   + N+        D D    
Sbjct: 113 MLGPTGSGKTLLAQTLAKKLNVPFAIADATSLTEAGYVGEDVENIILKLVQAADYDIELA 172

Query: 108 ---VLFIDEIHRLS 118
              +++IDEI +++
Sbjct: 173 QTGIIYIDEIDKIT 186


>gi|194745470|ref|XP_001955211.1| GF16351 [Drosophila ananassae]
 gi|190628248|gb|EDV43772.1| GF16351 [Drosophila ananassae]
          Length = 669

 Score = 40.0 bits (92), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108
           VL VGPPG GKT LA+ VA E G  F + S   +     G+   L      +        
Sbjct: 426 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPST 485

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 486 IFIDEIDAL 494


>gi|189219178|ref|YP_001939819.1| MoxR-like ATPase [Methylacidiphilum infernorum V4]
 gi|161075757|gb|ABX56626.1| ATPase [Methylacidiphilum infernorum V4]
 gi|189186036|gb|ACD83221.1| MoxR-like ATPase [Methylacidiphilum infernorum V4]
          Length = 309

 Score = 40.0 bits (92), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 18/99 (18%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNF-----------------RSTSGPVIAKAGD 95
           AL  VL  GPPG+GKT LA+ VA+ +G                    ++  G ++A    
Sbjct: 49  ALSAVLLDGPPGVGKTFLAKSVAKAIGAKLLLFQFFPGCGKEELLRDKTIDGALVAGIIP 108

Query: 96  LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           L A+ ++LE + VL ++E+ +  + V+  L   + + Q+
Sbjct: 109 L-AIASSLEKKTVLILNELDKAEVAVDSFLLDFINEAQV 146


>gi|164659848|ref|XP_001731048.1| hypothetical protein MGL_2047 [Malassezia globosa CBS 7966]
 gi|159104946|gb|EDP43834.1| hypothetical protein MGL_2047 [Malassezia globosa CBS 7966]
          Length = 987

 Score = 40.0 bits (92), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 99/234 (42%), Gaps = 38/234 (16%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           +L VGPPG GKT++A+ +A  L   F R + G V  +A              G + A L 
Sbjct: 526 LLLVGPPGTGKTSIARSLAAALQRPFVRLSLGGVRDEAEIRGHRRTYVGALPGSIVASLR 585

Query: 102 NLEDRD-VLFIDEIHRLSIIVEEILYPA---MEDFQLDLMVGEGPSARSVKINLSRFTLI 157
                D V+ +DE+ +LS  +     P    +E   L+          +V +NLSR   I
Sbjct: 586 KARASDCVMLLDELDKLSNGMGFHGDPTAAMLEVLDLEQNHTFKDHYLNVPVNLSRVIFI 645

Query: 158 AATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR----------GAKLTGLAVTDEA 207
           A    +  +  PL DR    + +  Y  ++   I QR          G  L+ +A++ E 
Sbjct: 646 ATANSLDTIPEPLLDRVDT-VHVAGYTYDEKVAIAQRHLLPKQVAVHGLTLSNVAMSHEI 704

Query: 208 ACEIAMRS------RGTPRIAGRLLR-RVRDFAEV-AHAKTITREIADAALLRL 253
              IA         R   R  G ++R +  ++AE    + T T EI+ A LLR+
Sbjct: 705 LMTIAQSYTREAGVRTMERRIGDVVRAKAVEYAESRGGSATYTPEISQADLLRI 758


>gi|187928949|ref|YP_001899436.1| ATP-dependent protease ATP-binding subunit ClpX [Ralstonia
           pickettii 12J]
 gi|238691846|sp|B2UFQ3|CLPX_RALPJ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|187725839|gb|ACD27004.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ralstonia
           pickettii 12J]
          Length = 424

 Score = 40.0 bits (92), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104
           ++L +GP G GKT LAQ +AR L V F       + +AG +          LL N     
Sbjct: 117 NILLIGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEV 176

Query: 105 ---DRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 177 DKAQRGIVYIDEIDKIS 193


>gi|119222469|gb|ABL62432.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222471|gb|ABL62433.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222473|gb|ABL62434.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222475|gb|ABL62435.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222477|gb|ABL62436.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222479|gb|ABL62437.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222483|gb|ABL62439.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222485|gb|ABL62440.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222487|gb|ABL62441.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
          Length = 197

 Score = 40.0 bits (92), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +AR L V F       + +AG    D+  ++ NL        
Sbjct: 1   NILLLGPTGSGKTLLAQTLARILNVPFTIADATCLTEAGYVGEDVENIIVNLLQAADHDI 60

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI +++
Sbjct: 61  ERAQRGIVYIDEIDKIA 77


>gi|119222243|gb|ABL62319.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222245|gb|ABL62320.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222247|gb|ABL62321.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222249|gb|ABL62322.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222251|gb|ABL62323.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222253|gb|ABL62324.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
          Length = 198

 Score = 40.0 bits (92), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +AR L V F       + +AG    D+  ++ NL        
Sbjct: 1   NILLLGPTGSGKTLLAQTLARILNVPFTIADATCLTEAGYVGEDVENIIVNLLQAADHDI 60

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI +++
Sbjct: 61  ERAQRGIVYIDEIDKIA 77


>gi|161524523|ref|YP_001579535.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia
           multivorans ATCC 17616]
 gi|189350721|ref|YP_001946349.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia
           multivorans ATCC 17616]
 gi|221198215|ref|ZP_03571261.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           multivorans CGD2M]
 gi|221209203|ref|ZP_03582195.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           multivorans CGD2]
 gi|221215058|ref|ZP_03588025.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           multivorans CGD1]
 gi|238687053|sp|A9AJR1|CLPX_BURM1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|160341952|gb|ABX15038.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           multivorans ATCC 17616]
 gi|189334743|dbj|BAG43813.1| ATP-dependent Clp protease ATP-binding subunit [Burkholderia
           multivorans ATCC 17616]
 gi|221164994|gb|EED97473.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           multivorans CGD1]
 gi|221170941|gb|EEE03396.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           multivorans CGD2]
 gi|221182147|gb|EEE14548.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           multivorans CGD2M]
          Length = 423

 Score = 40.0 bits (92), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104
           ++L +GP G GKT LAQ +AR L V F       + +AG +          LL N     
Sbjct: 116 NILLIGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEV 175

Query: 105 ---DRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 176 DKAQRGIVYIDEIDKIS 192


>gi|187923897|ref|YP_001895539.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia
           phytofirmans PsJN]
 gi|296157828|ref|ZP_06840662.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           sp. Ch1-1]
 gi|238689607|sp|B2T404|CLPX_BURPP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|187715091|gb|ACD16315.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           phytofirmans PsJN]
 gi|295892074|gb|EFG71858.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           sp. Ch1-1]
          Length = 423

 Score = 40.0 bits (92), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104
           ++L +GP G GKT LAQ +AR L V F       + +AG +          LL N     
Sbjct: 116 NILLIGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEV 175

Query: 105 ---DRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 176 DKAQRGIVYIDEIDKIS 192


>gi|32266682|ref|NP_860714.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
           hepaticus ATCC 51449]
 gi|46576465|sp|Q7VGY5|CLPX_HELHP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|32262733|gb|AAP77780.1| ATP-dependent Clp protease [Helicobacter hepaticus ATCC 51449]
          Length = 426

 Score = 40.0 bits (92), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 69/158 (43%), Gaps = 41/158 (25%)

Query: 6   GLLSRN--VSQEDADISLLRPRTL-----EEFTGQVEA--CSNLKVFIEAAKARAEALD- 55
           G L++N    QE  DI    P+ L     E   GQ EA    ++ V+    + +A +L  
Sbjct: 46  GYLNKNPQQDQEAIDIKTPSPKELKAKLDEYVIGQDEAKRVFSVAVYNHYKRIKANSLSE 105

Query: 56  -----------------HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG---- 94
                            ++L +GP G GKT +AQ +AR L +    +    + +AG    
Sbjct: 106 EEMPNPILQDDVELSKSNILLIGPTGSGKTLMAQTLARFLDIPIAISDATSLTEAGYVGE 165

Query: 95  DLAALLTNL----------EDRDVLFIDEIHRLSIIVE 122
           D+  +LT L           ++ ++FIDEI ++S + E
Sbjct: 166 DVENILTRLLQAADGDVKKAEKGIVFIDEIDKISRLSE 203


>gi|21396489|ref|NP_004784.2| lon protease homolog, mitochondrial precursor [Homo sapiens]
 gi|12644239|sp|P36776|LONM_HUMAN RecName: Full=Lon protease homolog, mitochondrial; AltName:
           Full=LONHs; AltName: Full=Lon protease-like protein;
           Short=LONP; AltName: Full=Mitochondrial ATP-dependent
           protease Lon; AltName: Full=Serine protease 15; Flags:
           Precursor
 gi|4580549|gb|AAD24414.1|AF059309_1 LON protease [Homo sapiens]
 gi|12652953|gb|AAH00235.1| Lon peptidase 1, mitochondrial [Homo sapiens]
 gi|119589557|gb|EAW69151.1| protease, serine, 15, isoform CRA_a [Homo sapiens]
 gi|119589560|gb|EAW69154.1| protease, serine, 15, isoform CRA_a [Homo sapiens]
 gi|123989499|gb|ABM83881.1| protease, serine, 15 [synthetic construct]
 gi|123999245|gb|ABM87201.1| protease, serine, 15 [synthetic construct]
 gi|311346898|gb|ADP90374.1| mitochondrial lon protease-like protein [Homo sapiens]
 gi|311346900|gb|ADP90375.1| mitochondrial lon protease-like protein [Homo sapiens]
 gi|311346902|gb|ADP90376.1| mitochondrial lon protease-like protein [Homo sapiens]
 gi|311346904|gb|ADP90377.1| mitochondrial lon protease-like protein [Homo sapiens]
 gi|311346906|gb|ADP90378.1| mitochondrial lon protease-like protein [Homo sapiens]
 gi|311346908|gb|ADP90379.1| mitochondrial lon protease-like protein [Homo sapiens]
 gi|311346910|gb|ADP90380.1| mitochondrial lon protease-like protein [Homo sapiens]
 gi|311346912|gb|ADP90381.1| mitochondrial lon protease-like protein [Homo sapiens]
 gi|311346914|gb|ADP90382.1| mitochondrial lon protease-like protein [Homo sapiens]
 gi|311346916|gb|ADP90383.1| mitochondrial lon protease-like protein [Homo sapiens]
 gi|311346918|gb|ADP90384.1| mitochondrial lon protease-like protein [Homo sapiens]
 gi|311346920|gb|ADP90385.1| mitochondrial lon protease-like protein [Homo sapiens]
 gi|311346922|gb|ADP90386.1| mitochondrial lon protease-like protein [Homo sapiens]
 gi|311346926|gb|ADP90388.1| mitochondrial lon protease-like protein [Homo sapiens]
 gi|311346928|gb|ADP90389.1| mitochondrial lon protease-like protein [Homo sapiens]
 gi|311346930|gb|ADP90390.1| mitochondrial lon protease-like protein [Homo sapiens]
 gi|311346932|gb|ADP90391.1| mitochondrial lon protease-like protein [Homo sapiens]
 gi|311346934|gb|ADP90392.1| mitochondrial lon protease-like protein [Homo sapiens]
 gi|311346936|gb|ADP90393.1| mitochondrial lon protease-like protein [Homo sapiens]
 gi|311346938|gb|ADP90394.1| mitochondrial lon protease-like protein [Homo sapiens]
 gi|311346942|gb|ADP90396.1| mitochondrial lon protease-like protein [Homo sapiens]
 gi|311346944|gb|ADP90397.1| mitochondrial lon protease-like protein [Homo sapiens]
 gi|311346946|gb|ADP90398.1| mitochondrial lon protease-like protein [Homo sapiens]
 gi|311346948|gb|ADP90399.1| mitochondrial lon protease-like protein [Homo sapiens]
 gi|311346950|gb|ADP90400.1| mitochondrial lon protease-like protein [Homo sapiens]
 gi|311346952|gb|ADP90401.1| mitochondrial lon protease-like protein [Homo sapiens]
 gi|311346954|gb|ADP90402.1| mitochondrial lon protease-like protein [Homo sapiens]
 gi|311346956|gb|ADP90403.1| mitochondrial lon protease-like protein [Homo sapiens]
 gi|311346958|gb|ADP90404.1| mitochondrial lon protease-like protein [Homo sapiens]
 gi|311346960|gb|ADP90405.1| mitochondrial lon protease-like protein [Homo sapiens]
 gi|311346962|gb|ADP90406.1| mitochondrial lon protease-like protein [Homo sapiens]
 gi|311346964|gb|ADP90407.1| mitochondrial lon protease-like protein [Homo sapiens]
 gi|311346966|gb|ADP90408.1| mitochondrial lon protease-like protein [Homo sapiens]
 gi|311346968|gb|ADP90409.1| mitochondrial lon protease-like protein [Homo sapiens]
 gi|311346970|gb|ADP90410.1| mitochondrial lon protease-like protein [Homo sapiens]
 gi|311346972|gb|ADP90411.1| mitochondrial lon protease-like protein [Homo sapiens]
 gi|311346974|gb|ADP90412.1| mitochondrial lon protease-like protein [Homo sapiens]
 gi|311346976|gb|ADP90413.1| mitochondrial lon protease-like protein [Homo sapiens]
          Length = 959

 Score = 40.0 bits (92), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 87/207 (42%), Gaps = 33/207 (15%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLA 71
           S E+ D++  +    E+  G  +    +  FI  ++ R      +L F GPPG+GKT++A
Sbjct: 474 SNENLDLARAQAVLEEDHYGMEDVKKRILEFIAVSQLRGSTQGKILCFYGPPGVGKTSIA 533

Query: 72  QVVARELGVN-FRSTSGP--------------VIAKAGDLAALLTNLEDRD-VLFIDEIH 115
           + +AR L    FR + G               V A  G +   L   +  + ++ IDE+ 
Sbjct: 534 RSIARALNREYFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLILIDEVD 593

Query: 116 RL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           ++        S  + E+L P      LD  +        V ++LS+   I        + 
Sbjct: 594 KIGRGYQGDPSSALLELLDPEQNANFLDHYL-------DVPVDLSKVLFICTANVTDTIP 646

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQR 194
            PL+DR  + I ++ Y  ++   I +R
Sbjct: 647 EPLRDRMEM-INVSGYVAQEKLAIAER 672


>gi|17546431|ref|NP_519833.1| ATP-dependent protease ATP-binding subunit [Ralstonia solanacearum
           GMI1000]
 gi|21263463|sp|Q8XYP6|CLPX_RALSO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|17428729|emb|CAD15414.1| probable atp-dependent clp protease atp-binding subunit clpx
           protein [Ralstonia solanacearum GMI1000]
          Length = 424

 Score = 40.0 bits (92), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104
           ++L +GP G GKT LAQ +AR L V F       + +AG +          LL N     
Sbjct: 117 NILLIGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEV 176

Query: 105 ---DRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 177 DKAQRGIVYIDEIDKIS 193


>gi|194336865|ref|YP_002018659.1| AAA family ATPase, CDC48 subfamily [Pelodictyon phaeoclathratiforme
           BU-1]
 gi|194309342|gb|ACF44042.1| AAA family ATPase, CDC48 subfamily [Pelodictyon phaeoclathratiforme
           BU-1]
          Length = 715

 Score = 40.0 bits (92), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           ++  G PG GKT LA+ +A E GVNF S  GP I
Sbjct: 493 IILYGKPGTGKTYLAKALASESGVNFISVKGPQI 526



 Score = 37.0 bits (84), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLAALLTNL------EDRDV 108
           V   GPPG GKT + + VA+E    F + SGP I     G+  A + N+          +
Sbjct: 218 VFLYGPPGTGKTLIVRAVAQETDAYFINISGPEIMGKYYGESEARVRNIFAEAQSHAPSI 277

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 278 IFIDEI 283


>gi|66357178|ref|XP_625767.1| CDC48 like AAA ATpase [Cryptosporidium parvum Iowa II]
 gi|46226983|gb|EAK87949.1| CDC48 like AAA ATpase [Cryptosporidium parvum Iowa II]
          Length = 891

 Score = 40.0 bits (92), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 9/74 (12%)

Query: 24  PRT-LEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVV 74
           P+T   +  G  E    LK  +E     +E  ++        VL  GPPG  KT +A+ V
Sbjct: 560 PKTDWNDIGGYEEVKEQLKECVEWPLIHSELFEYMKIKPPSGVLLYGPPGCSKTLMAKAV 619

Query: 75  ARELGVNFRSTSGP 88
           A E  +NF S  GP
Sbjct: 620 ATESKMNFISVKGP 633


>gi|322387323|ref|ZP_08060933.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           infantis ATCC 700779]
 gi|321141852|gb|EFX37347.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           infantis ATCC 700779]
          Length = 410

 Score = 40.0 bits (92), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLT--------NL 103
           ++L +GP G GKT LAQ +A+ L V F       + +AG    D+  +L         N+
Sbjct: 114 NILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNI 173

Query: 104 E--DRDVLFIDEIHRLS 118
           E  +R ++++DEI +++
Sbjct: 174 ERAERGIIYVDEIDKIA 190


>gi|317405212|gb|EFV85551.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Achromobacter
           xylosoxidans C54]
          Length = 432

 Score = 40.0 bits (92), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104
           +++ +GP G GKT LAQ +AR L V F       + +AG +          LL N     
Sbjct: 115 NIMLIGPTGSGKTLLAQTLARMLNVPFVMADATTLTEAGYVGEDVENIIQKLLQNCNYEV 174

Query: 105 ---DRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 175 EKAQRAIIYIDEIDKIS 191


>gi|317164409|gb|ADV07950.1| ATP-dependent protease ATP-binding subunit ClpX [Neisseria
           gonorrhoeae TCDC-NG08107]
          Length = 442

 Score = 40.0 bits (92), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +AR+L V F       + +AG    D+  ++T L        
Sbjct: 142 NILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDV 201

Query: 104 --EDRDVLFIDEIHRLS 118
                 +++IDEI ++S
Sbjct: 202 EKAQHGIVYIDEIDKIS 218


>gi|293606139|ref|ZP_06688504.1| ATP-dependent Clp protease ATP-binding subunit [Achromobacter
           piechaudii ATCC 43553]
 gi|292815594|gb|EFF74710.1| ATP-dependent Clp protease ATP-binding subunit [Achromobacter
           piechaudii ATCC 43553]
          Length = 432

 Score = 40.0 bits (92), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104
           +++ +GP G GKT LAQ +AR L V F       + +AG +          LL N     
Sbjct: 115 NIMLIGPTGSGKTLLAQTLARMLNVPFVMADATTLTEAGYVGEDVENIIQKLLQNCNYEV 174

Query: 105 ---DRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 175 EKAQRAIIYIDEIDKIS 191


>gi|291002133|ref|XP_002683633.1| predicted protein [Naegleria gruberi]
 gi|284097262|gb|EFC50889.1| predicted protein [Naegleria gruberi]
          Length = 351

 Score = 40.0 bits (92), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 7/73 (9%)

Query: 11 NVSQEDAD--ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
          N S  DA   I   RP  L +     E  S ++  I+  K     L H+L  GPPG GKT
Sbjct: 5  NSSSSDAKMWIEKYRPHELTDLLSHTEIISTIQRLIDGGK-----LPHLLLYGPPGTGKT 59

Query: 69 TLAQVVARELGVN 81
          +    +A++L  N
Sbjct: 60 STVLAIAKKLFGN 72


>gi|303320579|ref|XP_003070289.1| ATPase, AAA family protein [Coccidioides posadasii C735 delta
           SOWgp]
 gi|240109975|gb|EER28144.1| ATPase, AAA family protein [Coccidioides posadasii C735 delta
           SOWgp]
          Length = 762

 Score = 40.0 bits (92), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 537 VLLWGPPGCGKTLLAKAVANESRANFISVKGP 568



 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL  GPPG GKT +A   A ELGV F + S P I    +G+    L    D        +
Sbjct: 232 VLLHGPPGCGKTLIANAFAAELGVPFIAISAPSIVSGMSGESEKALREHFDEAKKAAPCL 291

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 292 VFIDEIDAIT 301


>gi|240013975|ref|ZP_04720888.1| ATP-dependent protease ATP-binding subunit ClpX [Neisseria
           gonorrhoeae DGI18]
 gi|240016417|ref|ZP_04722957.1| ATP-dependent protease ATP-binding subunit ClpX [Neisseria
           gonorrhoeae FA6140]
 gi|240121542|ref|ZP_04734504.1| ATP-dependent protease ATP-binding subunit ClpX [Neisseria
           gonorrhoeae PID24-1]
          Length = 414

 Score = 40.0 bits (92), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +AR+L V F       + +AG    D+  ++T L        
Sbjct: 114 NILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDV 173

Query: 104 --EDRDVLFIDEIHRLS 118
                 +++IDEI ++S
Sbjct: 174 EKAQHGIVYIDEIDKIS 190


>gi|229494160|ref|ZP_04387923.1| cell division protease FtsH [Rhodococcus erythropolis SK121]
 gi|229318522|gb|EEN84380.1| cell division protease FtsH [Rhodococcus erythropolis SK121]
          Length = 850

 Score = 40.0 bits (92), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 33/59 (55%), Gaps = 6/59 (10%)

Query: 34  VEACSNLKVFIEAAKARAEALD-----HVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VE    +K F++   AR +AL       VL  GPPG GKT LA+ VA E GV F + SG
Sbjct: 167 VEELYEIKDFLQN-PARYQALGAKIPRGVLLYGPPGTGKTLLARAVAGEAGVPFFTISG 224


>gi|222632348|gb|EEE64480.1| hypothetical protein OsJ_19330 [Oryza sativa Japonica Group]
          Length = 504

 Score = 40.0 bits (92), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 14/81 (17%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LA+ +AR   V F       I +AG    D+ +++ NL        
Sbjct: 121 NILLIGPTGSGKTLLAKTLARFADVPFVIADATAITQAGYSGEDVESIICNLLAAAKFNV 180

Query: 104 --EDRDVLFIDEIHRLSIIVE 122
              +R +++IDE+ +L   VE
Sbjct: 181 EATERGIVYIDEVDKLIKKVE 201


>gi|222054983|ref|YP_002537345.1| ATP-dependent metalloprotease FtsH [Geobacter sp. FRC-32]
 gi|221564272|gb|ACM20244.1| ATP-dependent metalloprotease FtsH [Geobacter sp. FRC-32]
          Length = 616

 Score = 40.0 bits (92), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 46/104 (44%), Gaps = 15/104 (14%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78
           T E+  G   +   LK  ++  K      D        +L VGPPG GKT LA+ VA E 
Sbjct: 172 TFEDVAGMENSKQELKEMVDYLKNPKRFQDIGGKVPKGILLVGPPGTGKTLLARAVAGEA 231

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDR--DVLFIDEI 114
           GV F S S        V   A  +  L +N +     ++FIDE+
Sbjct: 232 GVAFFSISASQFIEMFVGVGASRVRDLFSNAKKAAPSIVFIDEL 275


>gi|218510874|ref|ZP_03508752.1| ATP-dependent protease ATP-binding subunit ClpX [Rhizobium etli
           Brasil 5]
          Length = 324

 Score = 40.0 bits (92), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  +++ VGP G GKT LAQ +AR + V F       + +AG +   + N+         
Sbjct: 51  AKSNIMLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 110

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDE+ ++S
Sbjct: 111 YNVERAQRGIVYIDEVDKIS 130


>gi|189462224|ref|ZP_03011009.1| hypothetical protein BACCOP_02907 [Bacteroides coprocola DSM 17136]
 gi|189431077|gb|EDV00062.1| hypothetical protein BACCOP_02907 [Bacteroides coprocola DSM 17136]
          Length = 414

 Score = 40.0 bits (92), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLT--------NL 103
           +++ VG  G GKT LA+ +A+ L V F      V+ +AG    D+ ++LT        N+
Sbjct: 114 NIIMVGSTGTGKTLLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVADYNV 173

Query: 104 E--DRDVLFIDEIHRLS 118
           E  +R ++FIDEI +++
Sbjct: 174 EEAERGIVFIDEIDKIA 190


>gi|239827923|ref|YP_002950547.1| ATP-dependent protease LonB [Geobacillus sp. WCH70]
 gi|239808216|gb|ACS25281.1| ATP-dependent protease LonB [Geobacillus sp. WCH70]
          Length = 556

 Score = 40.0 bits (92), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 5/72 (6%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           R++S  +     +RP++ E+  GQ +    LK  +     +     HV+  GPPG+GKT 
Sbjct: 51  RSISLTEPLAEKVRPKSFEDIVGQEDGIKALKAALCGPNPQ-----HVIIYGPPGVGKTA 105

Query: 70  LAQVVARELGVN 81
            A++V  E   N
Sbjct: 106 AARLVLEEAKKN 117


>gi|169831648|ref|YP_001717630.1| AAA family ATPase [Candidatus Desulforudis audaxviator MP104C]
 gi|169638492|gb|ACA59998.1| AAA family ATPase, CDC48 subfamily [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 753

 Score = 40.0 bits (92), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  G PG GKT +A+ VA E GVNF S  GP +
Sbjct: 510 ILLHGSPGTGKTLIAKAVANESGVNFISVKGPAL 543



 Score = 37.7 bits (86), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 8/75 (10%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR--- 106
           EA   VL  GPPG GKT +A+ VA E   +F   +GP I     G+  A L  + +    
Sbjct: 232 EAPKGVLLHGPPGTGKTLIARAVANETDAHFFHVNGPEIIHKFYGESEANLRGIFEEAGK 291

Query: 107 ---DVLFIDEIHRLS 118
               ++F+DEI  ++
Sbjct: 292 NAPSIIFLDEIDAIA 306


>gi|50303471|ref|XP_451677.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49640809|emb|CAH02070.1| KLLA0B03234p [Kluyveromyces lactis]
          Length = 804

 Score = 40.0 bits (92), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 9/82 (10%)

Query: 18  DISLLRPRTL-EEFTGQVEACSNLKVFI----EAAKARAE----ALDHVLFVGPPGLGKT 68
           +I L  P+   ++  GQ E    +K  I    EAA+  A+    A   VL  GPPG  KT
Sbjct: 528 EIFLETPKVYWDDIGGQEELKQKMKEMIQLPLEAAETFAKLGVSAPKGVLLYGPPGCSKT 587

Query: 69  TLAQVVARELGVNFRSTSGPVI 90
             A+ +A E G+NF +  GP I
Sbjct: 588 LTAKALATESGINFLAVKGPEI 609



 Score = 39.3 bits (90), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DV 108
           +L  GPPG GKT L + VA E   +  + SGP I     G+  A L ++ +        +
Sbjct: 307 ILLHGPPGTGKTMLLRCVANETDAHILTISGPSIVSKYLGETEAALRDIFNEAKRYQPSI 366

Query: 109 LFIDEIHRLS 118
           +FIDEI  L+
Sbjct: 367 IFIDEIDSLA 376


>gi|20808395|ref|NP_623566.1| ATP-dependent Zn protease [Thermoanaerobacter tengcongensis MB4]
 gi|254479371|ref|ZP_05092706.1| ATP-dependent metallopeptidase HflB subfamily protein
           [Carboxydibrachium pacificum DSM 12653]
 gi|20517008|gb|AAM25170.1| ATP-dependent Zn proteases [Thermoanaerobacter tengcongensis MB4]
 gi|214034684|gb|EEB75423.1| ATP-dependent metallopeptidase HflB subfamily protein
           [Carboxydibrachium pacificum DSM 12653]
          Length = 510

 Score = 40.0 bits (92), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 45/104 (43%), Gaps = 15/104 (14%)

Query: 26  TLEEFTGQVEACSNLKVFIE-------AAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  E    LKV I+         K  A+    +LF GPPG GKT LA  +A E 
Sbjct: 82  TFKDVAGLDEVIEELKVIIDFMTNTEKYNKMGAKIPKGILFYGPPGTGKTLLATALAGET 141

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDR--DVLFIDEI 114
              F S SG       V   A  + AL    +     ++FIDEI
Sbjct: 142 NSTFISASGSEFVEKYVGVGASRIRALFAKAKKNAPSIIFIDEI 185


>gi|260063604|ref|YP_003196684.1| putative transmembrane AAA-metalloprotease FtsH [Robiginitalea
           biformata HTCC2501]
 gi|88783049|gb|EAR14222.1| putative transmembrane AAA-metalloprotease FtsH [Robiginitalea
           biformata HTCC2501]
          Length = 696

 Score = 40.0 bits (92), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 34/65 (52%), Gaps = 8/65 (12%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VL 109
           L VGPPG GKT LA+ VA E  V F S SG       V   A  +  L    +D+   ++
Sbjct: 233 LLVGPPGTGKTLLAKAVAGEAKVPFFSLSGSDFVEMFVGVGASRVRDLFKQAKDKSPAII 292

Query: 110 FIDEI 114
           FIDEI
Sbjct: 293 FIDEI 297


>gi|325959789|ref|YP_004291255.1| AAA family ATPase [Methanobacterium sp. AL-21]
 gi|325331221|gb|ADZ10283.1| AAA family ATPase, CDC48 subfamily [Methanobacterium sp. AL-21]
          Length = 729

 Score = 40.0 bits (92), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 8/73 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
           T E+  G  E    ++  IE    R E  +         VL  GPPG GKT LA+ VA E
Sbjct: 201 TYEDIGGLKEEVKKVREMIEIPLKRPELFERLGIAPPKGVLMHGPPGTGKTLLAKAVANE 260

Query: 78  LGVNFRSTSGPVI 90
              +F + +GP I
Sbjct: 261 SDAHFIAINGPEI 273



 Score = 39.7 bits (91), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E   NF +  GP
Sbjct: 512 VLIYGPPGTGKTLLAKAVANESDANFIAVKGP 543


>gi|325105012|ref|YP_004274666.1| DNA polymerase III, subunits gamma and tau [Pedobacter saltans
          DSM 12145]
 gi|324973860|gb|ADY52844.1| DNA polymerase III, subunits gamma and tau [Pedobacter saltans
          DSM 12145]
          Length = 605

 Score = 40.0 bits (92), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 4/65 (6%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
          RP T E   GQ+   + LK  I++ +  A+A    LF GP G+GKTT A+++A+ +    
Sbjct: 12 RPVTFESVVGQLHITNTLKNAIKSNQL-AQAF---LFCGPRGVGKTTCARILAKTINCQN 67

Query: 83 RSTSG 87
           +  G
Sbjct: 68 LTAQG 72


>gi|313906308|ref|ZP_07839651.1| ATP-dependent protease La [Eubacterium cellulosolvens 6]
 gi|313468864|gb|EFR64223.1| ATP-dependent protease La [Eubacterium cellulosolvens 6]
          Length = 776

 Score = 40.0 bits (92), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 100/242 (41%), Gaps = 45/242 (18%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVF--IEAAKARAEALDHVLFVGPP 63
           GL    +S+++ D+   R    E+  G  +    +  +  +  A  + EA   V  VGPP
Sbjct: 302 GLPWNKMSKDNKDLKKARAALEEDHYGLEKVKERILEYLAVRLATKKGEA-PIVCLVGPP 360

Query: 64  GLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLTNLEDRD- 107
           G GKT++++ +A+ L   F R + G V  +A              G +A  L     R+ 
Sbjct: 361 GTGKTSISKSIAKALNKTFVRISLGGVRDEAEIRGHRRTYIGAMPGRIAQGLHQAGVRNP 420

Query: 108 VLFIDEIHR--------LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA 159
           ++ +DEI +        +S  + E+L P       D  V        V ++LS    IA 
Sbjct: 421 LMLLDEIDKTSSDYKGDISSALLEVLDPEENSHFRDHYV-------EVPLDLSDVLFIAT 473

Query: 160 TTRVGLLTNPLQDRFGIPIRLNFY-EIEDL---------KTIVQRGAKLTGLAVTDEAAC 209
              +  +  PL DR  + I +N Y E E +         K +   G K T L + DEA  
Sbjct: 474 ANDIQTIPKPLLDRMEL-IEINSYTENEKIHIAREHLMPKQLRSNGLKKTQLTIDDEALH 532

Query: 210 EI 211
           EI
Sbjct: 533 EI 534


>gi|311346924|gb|ADP90387.1| mitochondrial lon protease-like protein [Homo sapiens]
          Length = 959

 Score = 40.0 bits (92), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 87/207 (42%), Gaps = 33/207 (15%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLA 71
           S E+ D++  +    E+  G  +    +  FI  ++ R      +L F GPPG+GKT++A
Sbjct: 474 SNENLDLARAQAVLEEDHYGMEDVKKRILEFIAVSQLRGSTQGKILCFYGPPGVGKTSIA 533

Query: 72  QVVARELGVN-FRSTSGP--------------VIAKAGDLAALLTNLEDRD-VLFIDEIH 115
           + +AR L    FR + G               V A  G +   L   +  + ++ IDE+ 
Sbjct: 534 RSIARALNREYFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLILIDEVD 593

Query: 116 RL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           ++        S  + E+L P      LD  +        V ++LS+   I        + 
Sbjct: 594 KIGRGYQGDPSSALLELLDPEQNANFLDHYL-------DVPVDLSKVLFICTANVTDTIP 646

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQR 194
            PL+DR  + I ++ Y  ++   I +R
Sbjct: 647 EPLRDRMEM-INVSGYVAQEKLAIAER 672


>gi|320106217|ref|YP_004181807.1| ATP-dependent protease La [Terriglobus saanensis SP1PR4]
 gi|319924738|gb|ADV81813.1| ATP-dependent protease La [Terriglobus saanensis SP1PR4]
          Length = 820

 Score = 40.0 bits (92), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 87/204 (42%), Gaps = 51/204 (25%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           + FVGPPG+GKT+L   +A+  G  F R + G V  +A              G +   + 
Sbjct: 366 LCFVGPPGVGKTSLGMSIAKATGRKFVRFSLGGVRDEAEIRGHRRTYIGSLPGQIIQSMK 425

Query: 102 NLEDRD-VLFIDEIHRL--------SIIVEEILYP----AMEDFQLDLMVGEGPSARSVK 148
               ++ V+ +DEI ++        +  + E+L P      +D  LD           V+
Sbjct: 426 KAGTKNPVIMLDEIDKMASDFRGDPASAMLEVLDPEQNSTFQDHYLD-----------VE 474

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL----KTIVQRGAKLTGLA-- 202
            +LS+   +A    +  +  PL+DR  I     + EIE L    + ++++  + TGL   
Sbjct: 475 YDLSQVLFVATANVLHTIPGPLRDRMEILQLHGYTEIEKLEIAKQYLLKKQREATGLTEE 534

Query: 203 ---VTDEAACEIAMRSRGTPRIAG 223
               TD A  EI    RG  R AG
Sbjct: 535 NIEFTDGALKEII---RGYTREAG 555


>gi|301061949|ref|ZP_07202678.1| putative ATP-dependent Clp protease, ATP-binding subunit ClpX
           [delta proteobacterium NaphS2]
 gi|300443966|gb|EFK08002.1| putative ATP-dependent Clp protease, ATP-binding subunit ClpX
           [delta proteobacterium NaphS2]
          Length = 611

 Score = 40.0 bits (92), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 59/127 (46%), Gaps = 26/127 (20%)

Query: 55  DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK----AGDLAALLTN-------- 102
           ++VL +GP G+GKT + +++A++LGV F        ++     GD+  L+ +        
Sbjct: 131 NNVLMIGPTGVGKTYMIKLIAQKLGVPFVKGDATKFSETGYVGGDVEDLIRDLVYEADES 190

Query: 103 --LEDRDVLFIDEIHRLSII------------VEEILYPAMEDFQLDLMVGEGPSARSVK 148
             L +  +++IDEI ++S              V+  L   ME+  +DL V   P ++   
Sbjct: 191 IELAENGIVYIDEIDKISSSRNLIGHDVSRTGVQRALLKPMEETDVDLKVPHDPISQIQA 250

Query: 149 INLSRFT 155
           I   R T
Sbjct: 251 IEHYRRT 257


>gi|257871357|ref|ZP_05651010.1| peptidase M41 [Enterococcus gallinarum EG2]
 gi|257805521|gb|EEV34343.1| peptidase M41 [Enterococcus gallinarum EG2]
          Length = 697

 Score = 40.0 bits (92), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 224 VLLEGPPGTGKTLLAKAVAGEAGVPFYSISG 254


>gi|284037881|ref|YP_003387811.1| ATP-dependent metalloprotease FtsH [Spirosoma linguale DSM 74]
 gi|283817174|gb|ADB39012.1| ATP-dependent metalloprotease FtsH [Spirosoma linguale DSM 74]
          Length = 676

 Score = 40.0 bits (92), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 8/65 (12%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VL 109
           L +GPPG GKT LA+ VA E GV F S SG       V   A  +  L    +++   ++
Sbjct: 235 LLIGPPGTGKTLLAKAVAGEAGVPFFSLSGSDFVEMFVGVGAARVRDLFKQAKEKAPCII 294

Query: 110 FIDEI 114
           FIDEI
Sbjct: 295 FIDEI 299


>gi|224372201|ref|YP_002606573.1| HpFtsH [Nautilia profundicola AmH]
 gi|223588557|gb|ACM92293.1| HpFtsH [Nautilia profundicola AmH]
          Length = 640

 Score = 40.0 bits (92), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL------EDRDV 108
           VL VGPPG GKT LA+ VA E  V F + SG    +   G  AA + +L      E   +
Sbjct: 210 VLLVGPPGTGKTLLAKAVAGEADVPFFAVSGSSFIEMFVGVGAARVRDLFNQAKKEAPSI 269

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 270 IFIDEI 275


>gi|222148226|ref|YP_002549183.1| AAA-family ATPase [Agrobacterium vitis S4]
 gi|221735214|gb|ACM36177.1| AAA-family ATPase [Agrobacterium vitis S4]
          Length = 308

 Score = 40.0 bits (92), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 7/69 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLED-----RDVL 109
           +LF GPPG GK+  A+V+A+ELG+ F       +  +  G+ A+ L  L D       +L
Sbjct: 99  LLFCGPPGCGKSLTAEVLAKELGLPFMVAKLDALIGSMLGETASNLRRLFDAAERQTSIL 158

Query: 110 FIDEIHRLS 118
           FIDE   L+
Sbjct: 159 FIDEFDALA 167


>gi|198276945|ref|ZP_03209476.1| hypothetical protein BACPLE_03150 [Bacteroides plebeius DSM 17135]
 gi|198270470|gb|EDY94740.1| hypothetical protein BACPLE_03150 [Bacteroides plebeius DSM 17135]
          Length = 633

 Score = 40.0 bits (92), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 12/134 (8%)

Query: 1   MMDREGLLSRNVSQEDADISL--LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV- 57
           +   +G+  +N   E+  +S    RP T +   GQ    + LK  I   K     L H  
Sbjct: 10  LQKYQGIKQKNRHMENYIVSARKYRPSTFDTVVGQRALTTTLKNAIANHK-----LAHAY 64

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAAL----LTNLEDRDVLFIDE 113
           LF GP G+GKTT A++ A+ +     ++ G    +     A       N+ + D    + 
Sbjct: 65  LFCGPRGVGKTTCARIFAKTINCLHPTSEGEACNECESCKAFNEQRSYNIHELDAASNNS 124

Query: 114 IHRLSIIVEEILYP 127
           +  +  ++E++  P
Sbjct: 125 VEDIRSLIEQVRIP 138


>gi|164688546|ref|ZP_02212574.1| hypothetical protein CLOBAR_02191 [Clostridium bartlettii DSM
           16795]
 gi|164602959|gb|EDQ96424.1| hypothetical protein CLOBAR_02191 [Clostridium bartlettii DSM
           16795]
          Length = 423

 Score = 40.0 bits (92), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 64/144 (44%), Gaps = 13/144 (9%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP  +E+  GQ       K+     + +   + +++  GPPG GKTTLA ++A   G  
Sbjct: 8   LRPEAIEDMVGQSHIIGKGKIINRLIENKT--IPNMILYGPPGTGKTTLANIIANVTGKK 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLSIIVEEILYPAMEDFQL 134
           +   +  V     ++   + N   RD       +L +DEI  L+   ++ L   +E+  +
Sbjct: 66  YIKLNA-VNCGVKEIKDAIDN-SKRDLFSYNGIILMLDEIQALNKKQQQSLLEVIEEGSV 123

Query: 135 DLM--VGEGPSARSVKINLSRFTL 156
            L+    + P     K  LSR T+
Sbjct: 124 TLIASTADNPYFVVYKAILSRSTI 147


>gi|156035707|ref|XP_001585965.1| hypothetical protein SS1G_13057 [Sclerotinia sclerotiorum 1980]
 gi|154698462|gb|EDN98200.1| hypothetical protein SS1G_13057 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 650

 Score = 40.0 bits (92), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDR------DV 108
           +L  GPPG  KT  AQ VA E+G NF +  G  +++K  GD    + N+  R       +
Sbjct: 425 LLLYGPPGCSKTLTAQAVATEMGFNFFAVKGAELLSKYVGDSERAVRNIFSRARAAAPSI 484

Query: 109 LFIDEIHRL 117
           +F DEI  +
Sbjct: 485 IFFDEIESI 493


>gi|150024698|ref|YP_001295524.1| cell division protein FtsH [Flavobacterium psychrophilum JIP02/86]
 gi|149771239|emb|CAL42708.1| Cell division protein FtsH [Flavobacterium psychrophilum JIP02/86]
          Length = 643

 Score = 40.0 bits (92), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 34/65 (52%), Gaps = 8/65 (12%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DVL 109
           L VGPPG GKT LA+ VA E  V F S SG       V   A  +  L    +D+   ++
Sbjct: 227 LLVGPPGTGKTLLAKAVAGEAQVPFFSLSGSDFVEMFVGVGASRVRDLFKQAKDKSPSII 286

Query: 110 FIDEI 114
           FIDEI
Sbjct: 287 FIDEI 291


>gi|156102963|ref|XP_001617174.1| AAA family ATPase [Plasmodium vivax SaI-1]
 gi|148806048|gb|EDL47447.1| AAA family ATPase, putative [Plasmodium vivax]
          Length = 1070

 Score = 40.0 bits (92), Expect = 0.53,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT LA+ ++ E+  NF +  GP I
Sbjct: 610 ILLYGPPGCGKTMLAKAISNEMKANFIAIKGPEI 643


>gi|114653053|ref|XP_001159421.1| PREDICTED: similar to Psmc6 protein isoform 1 [Pan troglodytes]
          Length = 370

 Score = 40.0 bits (92), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 56/124 (45%), Gaps = 23/124 (18%)

Query: 8   LSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV--------L 58
           L  N+S ED  ++S        E  G  E    L+  IE      E    V        L
Sbjct: 132 LVYNMSHEDPGNVSY------SEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCL 185

Query: 59  FVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA-GDLAALLTNLED--RD----VLF 110
             GPPG GKT LA+ VA +L  NF +  S  ++ K  G+ A L+  + +  RD    ++F
Sbjct: 186 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIF 245

Query: 111 IDEI 114
           +DEI
Sbjct: 246 MDEI 249


>gi|158319483|ref|YP_001511990.1| ATP-dependent metalloprotease FtsH [Alkaliphilus oremlandii OhILAs]
 gi|158139682|gb|ABW17994.1| ATP-dependent metalloprotease FtsH [Alkaliphilus oremlandii OhILAs]
          Length = 651

 Score = 40.0 bits (92), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           +L VGPPG GKT L + VA E GV F S SG
Sbjct: 200 ILMVGPPGTGKTYLTKAVAGEAGVPFFSISG 230


>gi|89892857|ref|YP_516344.1| hypothetical protein DSY0111 [Desulfitobacterium hafniense Y51]
 gi|89332305|dbj|BAE81900.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 557

 Score = 40.0 bits (92), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 92/353 (26%), Positives = 132/353 (37%), Gaps = 89/353 (25%)

Query: 23  RPRTLEEFTGQVEACSNL-KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           RP+  ++  GQ      L    +++  A A      LF GP G GKTT A+V+A+ L   
Sbjct: 11  RPKNFKDMVGQDHVTKTLTNALMQSKVAHA-----YLFSGPRGTGKTTTAKVLAKALNCE 65

Query: 82  FRSTSGPVIAKAGDL------AALLTNLEDRDVLFIDEIH------RLS--------IIV 121
            R    P    A  L      A  +  ++      IDEI       RLS         I+
Sbjct: 66  HREGVEPCNQCAFCLSIDQGSAMEVFEIDAASNRGIDEIRDLRDKVRLSAGESKYKVYII 125

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           +E+     E F   L   E P  R V         I ATT V  +   +  R     R  
Sbjct: 126 DEVHMLTTEAFNALLKTLEEPPERVV--------FILATTEVHKIPLTILSRVQ---RFE 174

Query: 182 FYEI--EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           F+ I  E + + + +  +  G  V  EA   IA +S G  R A  +L             
Sbjct: 175 FHRIPLEQIHSHLDKVCQTIGRDVEPEALQIIAQKSEGGLRDALSIL------------- 221

Query: 240 TITREIADAALLRLAID-KMGFDQLDLRYLTMIARNFGG---------------GPVGIE 283
                  D  LL   +D K+G +Q+  + L M+   F                 G +G E
Sbjct: 222 -------DQCLL---LDGKLGVEQV-YQVLGMVGEEFSAQLVDHLLTGDYAKALGCLG-E 269

Query: 284 TISAGLSEPRDAIEDLIEPYMIQ-------QGFIQRTPRGRLLMPIAWQHLGI 329
            I+ G+ +PR  I +L++ YM Q       Q F Q  P  R  +    Q LG+
Sbjct: 270 GINQGM-DPRQIIRELLD-YMRQALLYASTQAFPQVAPHLREHLAYQCQMLGL 320


>gi|46579747|ref|YP_010555.1| ATP-dependent protease ATP-binding subunit ClpX [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|120602777|ref|YP_967177.1| ATP-dependent protease ATP-binding subunit ClpX [Desulfovibrio
           vulgaris DP4]
 gi|61211537|sp|Q72CE7|CLPX_DESVH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|166214774|sp|A1VE84|CLPX_DESVV RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|46449162|gb|AAS95814.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|120563006|gb|ABM28750.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Desulfovibrio
           vulgaris DP4]
 gi|311233537|gb|ADP86391.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfovibrio
           vulgaris RCH1]
          Length = 417

 Score = 40.0 bits (92), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 25/122 (20%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKAR---AEAL--------DHVLFVGPPGLGKTTL 70
           ++ R  E   GQ +A   L V +     R   AEAL         ++L +GP G GKT L
Sbjct: 67  IKARLDEYVIGQHQAKKILSVAVHNHYKRVFYAEALGGEVELEKSNILLIGPSGSGKTLL 126

Query: 71  AQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---EDRD-------VLFIDEIHR 116
           A+ +AR L V F       + +AG    D+  +L  L    D D       +++IDEI +
Sbjct: 127 AKTLARVLKVPFAIADATTLTEAGYVGEDVENILVQLLQNADYDIEAAAKGIIYIDEIDK 186

Query: 117 LS 118
           +S
Sbjct: 187 IS 188


>gi|33573324|emb|CAE37307.1| ATP-dependent Clp protease ATP-binding subunit [Bordetella
           parapertussis]
 gi|33575673|emb|CAE32751.1| ATP-dependent Clp protease ATP-binding subunit [Bordetella
           bronchiseptica RB50]
          Length = 453

 Score = 40.0 bits (92), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104
           +++ +GP G GKT LAQ +AR L V F       + +AG +          LL N     
Sbjct: 134 NIMLIGPTGSGKTLLAQTLARMLNVPFVMADATTLTEAGYVGEDVENIIQKLLQNCNYDV 193

Query: 105 ---DRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 194 EKAQRAIIYIDEIDKIS 210


>gi|83745914|ref|ZP_00942971.1| ClpX [Ralstonia solanacearum UW551]
 gi|300703973|ref|YP_003745575.1| ATPase and specificity subunit of clpx-clpp ATP-dependent serine
           protease [Ralstonia solanacearum CFBP2957]
 gi|83727604|gb|EAP74725.1| ClpX [Ralstonia solanacearum UW551]
 gi|299071636|emb|CBJ42960.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Ralstonia solanacearum CFBP2957]
          Length = 424

 Score = 40.0 bits (92), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104
           ++L +GP G GKT LAQ +AR L V F       + +AG +          LL N     
Sbjct: 117 NILLIGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEV 176

Query: 105 ---DRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 177 DKAQRGIVYIDEIDKIS 193


>gi|294495737|ref|YP_003542230.1| ATPase AAA [Methanohalophilus mahii DSM 5219]
 gi|292666736|gb|ADE36585.1| AAA family ATPase, CDC48 subfamily [Methanohalophilus mahii DSM
           5219]
          Length = 761

 Score = 40.0 bits (92), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 33/70 (47%), Gaps = 8/70 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAA--------KARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           T E+  G  E  S LK  +E          +   +A   VL  GPPG GKT LA+ +A E
Sbjct: 484 TWEDVGGLEEVKSLLKEAVEWPLKYPDSFRRIGVDAPKGVLLYGPPGTGKTMLAKAIAHE 543

Query: 78  LGVNFRSTSG 87
             VNF S  G
Sbjct: 544 SNVNFISAKG 553



 Score = 38.9 bits (89), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 47/107 (43%), Gaps = 16/107 (14%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARELG 79
           E+  G   A   ++  IE      E  D         VL  GPPG GKT LA+ VA E  
Sbjct: 213 EDLGGIKPAIGKIREMIELPLKHPELFDRLGIDAPKGVLLQGPPGTGKTMLARAVANESD 272

Query: 80  VNFRSTSGPVIAKA--GDLAALLTNL-EDRD-----VLFIDEIHRLS 118
             F S +GP I     G+    L  L ED +     ++F+DEI  ++
Sbjct: 273 AYFISINGPEIMSKFYGESEQHLRQLFEDAEANAPSIIFLDEIDSIA 319


>gi|284034750|ref|YP_003384681.1| AAA ATPase central domain-containing protein [Kribbella flavida DSM
           17836]
 gi|283814043|gb|ADB35882.1| AAA ATPase central domain protein [Kribbella flavida DSM 17836]
          Length = 572

 Score = 40.0 bits (92), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 38/74 (51%), Gaps = 12/74 (16%)

Query: 56  HVLFVGPPGLGKTTLAQVVAR---ELGVNFRST------SGPVIAKAGDLAALLTNLEDR 106
           H++F GPPG GKTT+A+VVAR    LG+    T      SG V    G  A     + D 
Sbjct: 342 HLIFAGPPGTGKTTVARVVARLYCALGLLAADTVIETDRSGLVAEWIGQTAVKTNEVVDS 401

Query: 107 ---DVLFIDEIHRL 117
               VLF+DE + L
Sbjct: 402 ALDGVLFVDEAYAL 415


>gi|260426453|ref|ZP_05780432.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Citreicella
           sp. SE45]
 gi|260420945|gb|EEX14196.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Citreicella
           sp. SE45]
          Length = 421

 Score = 40.0 bits (92), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+         
Sbjct: 110 AKSNILLIGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASE 169

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDE+ +++
Sbjct: 170 YNVERAQRGIVYIDEVDKIT 189


>gi|237718289|ref|ZP_04548770.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|293368802|ref|ZP_06615406.1| ATPase family associated with various cellular activities (AAA)
           [Bacteroides ovatus SD CMC 3f]
 gi|298483646|ref|ZP_07001821.1| ATPase, AAA family [Bacteroides sp. D22]
 gi|299147836|ref|ZP_07040899.1| ATPase, AAA family [Bacteroides sp. 3_1_23]
 gi|229452473|gb|EEO58264.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|292636107|gb|EFF54595.1| ATPase family associated with various cellular activities (AAA)
           [Bacteroides ovatus SD CMC 3f]
 gi|298270216|gb|EFI11802.1| ATPase, AAA family [Bacteroides sp. D22]
 gi|298514019|gb|EFI37905.1| ATPase, AAA family [Bacteroides sp. 3_1_23]
          Length = 324

 Score = 40.0 bits (92), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 24/168 (14%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKAGDLAALLTNLEDR-------- 106
           HVL  G PG+ KT LA++ AR +  +F R    P +  +  L   + N++          
Sbjct: 48  HVLIEGVPGVAKTLLARLTARLIDADFSRVQFTPDLMPSDVLGTTVFNMKTNGFDFHQGP 107

Query: 107 ---DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
              D++ +DEI+R     +  L+  ME+ Q+ +   +G + R   +    +T++A    V
Sbjct: 108 IFADIVLVDEINRAPAKTQAALFEVMEERQISI---DGTTHRMGDL----YTILATQNPV 160

Query: 164 ---GLLTNPLQ--DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDE 206
              G    P    DRF + I +++  +E+   I++R      L   D+
Sbjct: 161 EQEGTYKLPEAQLDRFLMKITMDYPSLEEEVNILERHHTNAALVKLDD 208


>gi|225027803|ref|ZP_03716995.1| hypothetical protein EUBHAL_02062 [Eubacterium hallii DSM 3353]
 gi|224954853|gb|EEG36062.1| hypothetical protein EUBHAL_02062 [Eubacterium hallii DSM 3353]
          Length = 618

 Score = 40.0 bits (92), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           V+ VGPPG GKT LA+ V+ E GV F S SG
Sbjct: 204 VILVGPPGTGKTLLAKAVSGEAGVPFFSISG 234


>gi|207343269|gb|EDZ70783.1| YLL034Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 693

 Score = 40.0 bits (92), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 426 VLLWGPPGCGKTLLAKAVANESRANFISIKGP 457



 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL  GPPG GKT++A  +A EL V F S S P +    +G+    + +L D        +
Sbjct: 98  VLLHGPPGCGKTSIANALAGELQVPFISISAPSVVSGMSGESEKKIRDLFDEARSLAPCL 157

Query: 109 LFIDEIHRLS 118
           +F DEI  ++
Sbjct: 158 VFFDEIDAIT 167


>gi|193785434|dbj|BAG54587.1| unnamed protein product [Homo sapiens]
          Length = 923

 Score = 40.0 bits (92), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 87/207 (42%), Gaps = 33/207 (15%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLA 71
           S E+ D++  +    E+  G  +    +  FI  ++ R      +L F GPPG+GKT++A
Sbjct: 438 SNENLDLARAQAVLEEDHYGMEDVKKRILEFIAVSQLRGSTQGKILCFYGPPGVGKTSIA 497

Query: 72  QVVARELGVN-FRSTSGP--------------VIAKAGDLAALLTNLEDRD-VLFIDEIH 115
           + +AR L    FR + G               V A  G +   L   +  + ++ IDE+ 
Sbjct: 498 RSIARALNREYFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLILIDEVD 557

Query: 116 RL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           ++        S  + E+L P      LD  +        V ++LS+   I        + 
Sbjct: 558 KIGRGYQGDPSSALLELLDPEQNANFLDHYL-------DVPVDLSKVLFICTANVTDTIP 610

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQR 194
            PL+DR  + I ++ Y  ++   I +R
Sbjct: 611 EPLRDRMEM-INVSGYVAQEKLAIAER 636


>gi|119222397|gb|ABL62396.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222399|gb|ABL62397.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222401|gb|ABL62398.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222403|gb|ABL62399.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222405|gb|ABL62400.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222407|gb|ABL62401.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222421|gb|ABL62408.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222423|gb|ABL62409.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus
           NewJersey2]
 gi|119222425|gb|ABL62410.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222427|gb|ABL62411.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222429|gb|ABL62412.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222431|gb|ABL62413.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222433|gb|ABL62414.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222435|gb|ABL62415.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222437|gb|ABL62416.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222439|gb|ABL62417.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
          Length = 197

 Score = 40.0 bits (92), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +AR L V F       + +AG    D+  ++ NL        
Sbjct: 2   NILLLGPTGSGKTLLAQTLARILNVPFTIADATCLTEAGYVGEDVENIIVNLLQAADHDI 61

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI +++
Sbjct: 62  ERAQRGIVYIDEIDKIA 78


>gi|115465091|ref|NP_001056145.1| Os05g0533900 [Oryza sativa Japonica Group]
 gi|48843829|gb|AAT47088.1| putative ATP-dependent Clp protease subunit clpX [Oryza sativa
           Japonica Group]
 gi|113579696|dbj|BAF18059.1| Os05g0533900 [Oryza sativa Japonica Group]
          Length = 406

 Score = 40.0 bits (92), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 14/81 (17%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LA+ +AR   V F       I +AG    D+ +++ NL        
Sbjct: 23  NILLIGPTGSGKTLLAKTLARFADVPFVIADATAITQAGYSGEDVESIICNLLAAAKFNV 82

Query: 104 --EDRDVLFIDEIHRLSIIVE 122
              +R +++IDE+ +L   VE
Sbjct: 83  EATERGIVYIDEVDKLIKKVE 103


>gi|30060003|gb|AAP13338.1| RFC-like DNA checkpoint protein Rad17 [Xenopus laevis]
          Length = 674

 Score = 40.0 bits (92), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 12/106 (11%)

Query: 11  NVSQEDADISLLRPRTLEEFT------GQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           + SQ D  I   RP    E         +VEA   LK  +E  + + +    +L  GPPG
Sbjct: 79  DYSQNDPWIDKYRPEIQAELAVHKKKIEEVEAW--LKTHVEK-RPQKQGGQILLLTGPPG 135

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLF 110
            GKT   QV+ +E+G+  +    P++    +    L  + DRD  F
Sbjct: 136 CGKTATIQVLTKEMGIQVQEWINPLMQ---EFKQDLPEVFDRDTRF 178


>gi|260905315|ref|ZP_05913637.1| DNA polymerase III, subunits gamma and tau [Brevibacterium linens
          BL2]
          Length = 1148

 Score = 40.0 bits (92), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 36/79 (45%), Gaps = 10/79 (12%)

Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGV 80
           RP T +E  GQ      LK  IE  +     ++H  LF GP G GKTT A+++AR L  
Sbjct: 9  YRPETFDEVIGQEHVTDPLKAAIERGR-----INHAYLFSGPRGCGKTTSARILARCLNC 63

Query: 81 NFRSTSGPVIAKAGDLAAL 99
                GP     G+  + 
Sbjct: 64 ----AKGPTPVPCGECPSC 78


>gi|54309797|ref|YP_130817.1| ATP-dependent protease ATP-binding subunit ClpX [Photobacterium
           profundum SS9]
 gi|61211506|sp|Q6LNW1|CLPX_PHOPR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|46914235|emb|CAG21015.1| putative ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Photobacterium profundum SS9]
          Length = 426

 Score = 40.0 bits (92), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LA+ +AR L V F       + +AG +   + N+            
Sbjct: 116 NILLIGPTGSGKTLLAETLARMLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 175

Query: 104 --EDRDVLFIDEIHRLS 118
              +R +++IDEI ++S
Sbjct: 176 AKAERGIVYIDEIDKIS 192


>gi|305665190|ref|YP_003861477.1| ATP-dependent protease ATP-binding subunit [Maribacter sp.
           HTCC2170]
 gi|88709942|gb|EAR02174.1| ATP-dependent protease ATP-binding subunit [Maribacter sp.
           HTCC2170]
          Length = 411

 Score = 40.0 bits (92), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLT--------NL 103
           +++ VG  G GKT +A+ +AR L V        V+ +AG    D+ ++LT        NL
Sbjct: 110 NIIMVGQTGTGKTLMAKTIARMLNVPLAIVDATVLTEAGYVGEDVESILTRLLQAADYNL 169

Query: 104 E--DRDVLFIDEIHRLS 118
           E  +R ++FIDEI +++
Sbjct: 170 EKAERGIVFIDEIDKIA 186


>gi|326800323|ref|YP_004318142.1| Sigma 54 interacting domain protein [Sphingobacterium sp. 21]
 gi|326551087|gb|ADZ79472.1| Sigma 54 interacting domain protein [Sphingobacterium sp. 21]
          Length = 414

 Score = 40.0 bits (92), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           +++ VG  G GKT LA+ +A+ L V F      V+ +AG    D+ ++LT L        
Sbjct: 111 NIIMVGETGTGKTLLAKTIAKVLNVPFCICDATVLTEAGYVGEDVESILTRLLQAADYDV 170

Query: 104 --EDRDVLFIDEIHRLS 118
              +R +++IDEI +++
Sbjct: 171 ASAERGIIYIDEIDKIA 187


>gi|307111636|gb|EFN59870.1| hypothetical protein CHLNCDRAFT_33715 [Chlorella variabilis]
          Length = 757

 Score = 40.0 bits (92), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 83/209 (39%), Gaps = 38/209 (18%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLA 71
           SQE  +++  +    E+  G  +    +  FI   K R      +L  VGPPG+GKT++ 
Sbjct: 201 SQEKLEVTAAKQVLDEDHYGLEDVKDRILEFIAVGKLRGSTQGKILCLVGPPGVGKTSIG 260

Query: 72  QVVARELGVNF------------------RSTSGPVIAKAGDLAALLTNLEDRDVLFIDE 113
           + +AR L   +                  R+  G +  K   +  L T       + IDE
Sbjct: 261 RSIARALNRKYYRFSVGGLSDVAEIKGHRRTYVGAMPGKM--VQCLKTTGTSNPFVLIDE 318

Query: 114 IHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
           I +L        +  + E+L P      LD  +        V ++LS+   +     +  
Sbjct: 319 IDKLGRGYQGDPASALLELLDPEQNSGFLDHYL-------DVPVDLSKVLFMCTANVLDT 371

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           +  PL DR  I IRL+ Y I D K  + R
Sbjct: 372 IPGPLLDRMEI-IRLSGY-IFDEKVAIAR 398


>gi|262038579|ref|ZP_06011948.1| DNA polymerase III, subunit gamma and tau [Leptotrichia
           goodfellowii F0264]
 gi|261747448|gb|EEY34918.1| DNA polymerase III, subunit gamma and tau [Leptotrichia
           goodfellowii F0264]
          Length = 501

 Score = 40.0 bits (92), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 97/233 (41%), Gaps = 44/233 (18%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH-VLFVGPPGLGKTTLAQVVARELGVN 81
           RP+  +E  GQ      +K        R + L H  LF GP G+GKTT+A+++A+  GVN
Sbjct: 15  RPQNFDEIAGQEFVTRAIK-----NSLREDKLSHAYLFTGPRGVGKTTIARLIAK--GVN 67

Query: 82  FRS---TSGP--VIAKAGDLAALLT----NLEDRDVLFIDEIHRLS-------------- 118
             +   T  P  V     ++A  ++     ++      IDEI  L               
Sbjct: 68  CLNNGITDNPCGVCDNCREIAQGISMDMIEIDAASNRGIDEIRELKEKINYQPVKGRRKI 127

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            I++E+     E F   L   E P A  +         I ATT +  + + +  R     
Sbjct: 128 YIIDEVHMLTKEAFNALLKTLEEPPAHVI--------FILATTEIDKIPDTVISRCQ--- 176

Query: 179 RLNFYEIE--DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           R +F  I+  D+  +++  A+   + + DE+   I  +S G+ R +  +  +V
Sbjct: 177 RYDFLPIDEKDITKLLKEVAEKENITIDDESLDLIYRKSEGSARDSFSIFEQV 229


>gi|256828016|ref|YP_003156744.1| ATP-dependent protease La [Desulfomicrobium baculatum DSM 4028]
 gi|256577192|gb|ACU88328.1| ATP-dependent protease La [Desulfomicrobium baculatum DSM 4028]
          Length = 815

 Score = 40.0 bits (92), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 79/195 (40%), Gaps = 48/195 (24%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           +  VGPPG+GKT+LA+ +AR  G  F R + G V  +A              G +   L 
Sbjct: 362 LCLVGPPGVGKTSLAKSIARATGREFVRLSLGGVRDEAEIRGHRRTYVGALPGKIIQSLK 421

Query: 102 NLEDRDVLF-IDEIHRLSI--------IVEEILYP----AMEDFQLDLMVGEGPSARSVK 148
            +   + +F +DE+ ++S+         + E+L P    A  D  LD+            
Sbjct: 422 RVSTNNPVFCLDEVDKMSMDFRGDPSAALLEVLDPEQNSAFNDHYLDM-----------D 470

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL---------KTIVQRGAKLT 199
            +LS+   I     +  +  PLQDR  I     + E E           K + Q G K  
Sbjct: 471 YDLSQVFFITTANSLQTIPLPLQDRMEIITIPGYLETEKERIASDFLLPKQLEQHGLKPE 530

Query: 200 GLAVTDEAACEIAMR 214
            L+++  A  EI  R
Sbjct: 531 NLSMSKGAILEIIRR 545


>gi|225562412|gb|EEH10691.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
          Length = 394

 Score = 40.0 bits (92), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+TL++   Q    + L+  ++A+      L H+LF GPPG GKT+    +A+ L
Sbjct: 42 RPKTLDDVASQEHTVTVLQRTLQASN-----LPHMLFYGPPGTGKTSTILALAKSL 92


>gi|160943001|ref|ZP_02090239.1| hypothetical protein FAEPRAM212_00478 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445695|gb|EDP22698.1| hypothetical protein FAEPRAM212_00478 [Faecalibacterium prausnitzii
           M21/2]
          Length = 616

 Score = 40.0 bits (92), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--V 108
           +L VGPPG GKT LA+ VA E  V F S SG    +      A  +  L    +++   +
Sbjct: 203 ILLVGPPGTGKTMLAKAVAGESNVPFFSISGSEFVEMFVGMGASKVRDLFKQAKEKAPCI 262

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 263 VFIDEI 268


>gi|149234968|ref|XP_001523363.1| activator 1 41 kDa subunit [Lodderomyces elongisporus NRRL
          YB-4239]
 gi|146453152|gb|EDK47408.1| activator 1 41 kDa subunit [Lodderomyces elongisporus NRRL
          YB-4239]
          Length = 402

 Score = 40.0 bits (92), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+ L++   Q  A   LK  I         L H+LF GPPG GKT+    +A++L
Sbjct: 42 RPKNLDDVASQDHAVKVLKKQISTGN-----LPHMLFYGPPGTGKTSTILALAKQL 92


>gi|20092857|ref|NP_618932.1| hypothetical protein MA4064 [Methanosarcina acetivorans C2A]
 gi|19918161|gb|AAM07412.1| hypothetical protein MA_4064 [Methanosarcina acetivorans C2A]
          Length = 428

 Score = 40.0 bits (92), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--------AKAGDLAALLTNLEDRDV 108
           +LFVGPPG GKT++A+ ++ +L + F      +I        AK  D   LL    +  +
Sbjct: 213 LLFVGPPGTGKTSVARALSEQLSIPFVEVKLSMITDQYLGETAKNIDRVFLLAKKLNPCI 272

Query: 109 LFIDEI 114
           LFIDE+
Sbjct: 273 LFIDEL 278


>gi|57642153|ref|YP_184631.1| replication factor C small subunit [Thermococcus kodakarensis
          KOD1]
 gi|62287362|sp|Q5JHP2|RFCS_PYRKO RecName: Full=Replication factor C small subunit; Short=RFC small
          subunit; AltName: Full=Clamp loader small subunit;
          Contains: RecName: Full=Pko RFC intein
 gi|57160477|dbj|BAD86407.1| replication factor C, small subunit [Thermococcus kodakarensis
          KOD1]
          Length = 866

 Score = 40.0 bits (92), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 7/63 (11%)

Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK--TTLAQ 72
          E   +   RP+ LE+  GQ      LK +++       ++ H+LF GPPG+GK  T  A+
Sbjct: 12 EKPWVEKYRPQRLEDIVGQDHIVKRLKHYVKTG-----SMPHLLFAGPPGVGKCLTGDAK 66

Query: 73 VVA 75
          V+A
Sbjct: 67 VIA 69


>gi|320041387|gb|EFW23320.1| ribosome biogenesis ATPase [Coccidioides posadasii str. Silveira]
          Length = 762

 Score = 40.0 bits (92), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA E   NF S  GP
Sbjct: 537 VLLWGPPGCGKTLLAKAVANESRANFISVKGP 568



 Score = 38.5 bits (88), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL  GPPG GKT +A   A ELGV F + S P I    +G+    L    D        +
Sbjct: 232 VLLHGPPGCGKTLIANAFAAELGVPFIAISAPSIVSGMSGESEKALREHFDEAKKAAPCL 291

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 292 VFIDEIDAIT 301


>gi|321262352|ref|XP_003195895.1| hypothetical protein CGB_H5110W [Cryptococcus gattii WM276]
 gi|317462369|gb|ADV24108.1| Hypothetical protein CGB_H5110W [Cryptococcus gattii WM276]
          Length = 1202

 Score = 40.0 bits (92), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 17/32 (53%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT LA+ VA    +NF S  GP
Sbjct: 899 ILLYGPPGTGKTLLAKAVATSFSLNFFSVKGP 930


>gi|311107152|ref|YP_003980005.1| ATP-dependent Clp protease ATP-binding subunit ClpX 1
           [Achromobacter xylosoxidans A8]
 gi|310761841|gb|ADP17290.1| ATP-dependent Clp protease, ATP-binding subunit ClpX 1
           [Achromobacter xylosoxidans A8]
          Length = 432

 Score = 40.0 bits (92), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104
           +++ +GP G GKT LAQ +AR L V F       + +AG +          LL N     
Sbjct: 115 NIMLIGPTGSGKTLLAQTLARMLNVPFVMADATTLTEAGYVGEDVENIIQKLLQNCNYEV 174

Query: 105 ---DRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 175 EKAQRAIIYIDEIDKIS 191


>gi|302808211|ref|XP_002985800.1| hypothetical protein SELMODRAFT_123078 [Selaginella
          moellendorffii]
 gi|300146307|gb|EFJ12977.1| hypothetical protein SELMODRAFT_123078 [Selaginella
          moellendorffii]
          Length = 345

 Score = 40.0 bits (92), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+ +++   Q E    L   +E        L H+LF GPPG GKT+ A  V REL
Sbjct: 12 RPKQVKDVAHQDEVVRTLANALETGN-----LPHLLFYGPPGTGKTSTALAVTREL 62


>gi|299066732|emb|CBJ37926.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Ralstonia solanacearum CMR15]
          Length = 424

 Score = 40.0 bits (92), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104
           ++L +GP G GKT LAQ +AR L V F       + +AG +          LL N     
Sbjct: 117 NILLIGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEV 176

Query: 105 ---DRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 177 DKAQRGIVYIDEIDKIS 193


>gi|294673359|ref|YP_003573975.1| AAA family ATPase [Prevotella ruminicola 23]
 gi|294473223|gb|ADE82612.1| ATPase, AAA family [Prevotella ruminicola 23]
          Length = 1063

 Score = 40.0 bits (92), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 48/104 (46%), Gaps = 16/104 (15%)

Query: 31  TGQVEACSNLKVFIEAAKARAEAL----DHVLFVGPPGLGKTTLAQVVA---RELGVNFR 83
           +G  +  +NL  F+    AR E       H +F G PG GKTT+A+++A   + LGV  R
Sbjct: 538 SGVKKEIANLAAFLNLQIARGETNTFQGKHYVFTGNPGTGKTTVARIMADIFKTLGVVAR 597

Query: 84  ST------SGPVIAKAGDLAALLTNLEDR---DVLFIDEIHRLS 118
                   S  V   +G  A     L D+    VLFIDE + L 
Sbjct: 598 GQLVEADRSKLVAGFSGQTAIKTNQLVDQAMGGVLFIDEAYTLK 641


>gi|261880081|ref|ZP_06006508.1| ATP-dependent metalloprotease FtsH [Prevotella bergensis DSM 17361]
 gi|270333236|gb|EFA44022.1| ATP-dependent metalloprotease FtsH [Prevotella bergensis DSM 17361]
          Length = 720

 Score = 40.0 bits (92), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 19/30 (63%), Positives = 21/30 (70%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           L +GPPG GKT LA+ VA E GV F S SG
Sbjct: 236 LLIGPPGTGKTLLAKAVAGEAGVPFFSMSG 265


>gi|251782781|ref|YP_002997084.1| DNA polymerase III subunits gamma and tau [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|242391411|dbj|BAH81870.1| DNA polymerase III subunits gamma and tau [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
          Length = 559

 Score = 40.0 bits (92), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 8/91 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           R +T +E  GQ    + LK  +E+ K     + H  LF GP G GKT+ A++ A+ +   
Sbjct: 10  RSQTFDEMVGQSVISTTLKQAVESGK-----ISHAYLFSGPRGTGKTSAAKIFAKAMNCP 64

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID 112
            +    P      D+   +TN    DV+ ID
Sbjct: 65  NQVNGEPC--NQCDICRDITNGSLEDVIEID 93


>gi|240281117|gb|EER44620.1| DNA replication factor C subunit Rfc2 [Ajellomyces capsulatus
          H143]
 gi|325092385|gb|EGC45695.1| activator 1 41 kDa subunit [Ajellomyces capsulatus H88]
          Length = 394

 Score = 40.0 bits (92), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+TL++   Q    + L+  ++A+      L H+LF GPPG GKT+    +A+ L
Sbjct: 42 RPKTLDDVASQEHTVTVLQRTLQASN-----LPHMLFYGPPGTGKTSTILALAKSL 92


>gi|294936741|ref|XP_002781856.1| cell division protein FtsH, putative [Perkinsus marinus ATCC 50983]
 gi|239892914|gb|EER13651.1| cell division protein FtsH, putative [Perkinsus marinus ATCC 50983]
          Length = 608

 Score = 40.0 bits (92), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 20/30 (66%), Positives = 21/30 (70%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           L VGPPG GKT LA+ VA E GV F S SG
Sbjct: 109 LLVGPPGTGKTLLAKAVAGESGVPFFSMSG 138


>gi|239907452|ref|YP_002954193.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Desulfovibrio
           magneticus RS-1]
 gi|239797318|dbj|BAH76307.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Desulfovibrio
           magneticus RS-1]
          Length = 417

 Score = 40.0 bits (92), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 67/146 (45%), Gaps = 31/146 (21%)

Query: 4   REGLLSRNVSQEDADISLLRP----RTLEEFT-GQVEACSNLKVFIE--------AAKAR 50
            E +   +V++E     LL P    R L+E+  GQ +A   L V +         A  A 
Sbjct: 44  NEIIAQESVTEETEGGKLLPPAEIKRLLDEYVIGQEQAKKILAVAVHNHYKRVYYAGSAG 103

Query: 51  AEALD----HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD--------LAA 98
           A+ ++    ++L +GP G GKT LAQ +AR L V F       + +AG         L  
Sbjct: 104 ADDVEIDKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILVQ 163

Query: 99  LLTNLE------DRDVLFIDEIHRLS 118
           LL N +       + +++IDEI +++
Sbjct: 164 LLQNADYDIESASKGIIYIDEIDKIA 189


>gi|226304114|ref|YP_002764072.1| ATP-dependent protease FtsH [Rhodococcus erythropolis PR4]
 gi|310946759|sp|C0ZPK5|FTSH_RHOE4 RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|226183229|dbj|BAH31333.1| ATP-dependent protease FtsH [Rhodococcus erythropolis PR4]
          Length = 854

 Score = 40.0 bits (92), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 33/59 (55%), Gaps = 6/59 (10%)

Query: 34  VEACSNLKVFIEAAKARAEALD-----HVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VE    +K F++   AR +AL       VL  GPPG GKT LA+ VA E GV F + SG
Sbjct: 176 VEELYEIKDFLQN-PARYQALGAKIPRGVLLYGPPGTGKTLLARAVAGEAGVPFFTISG 233


>gi|225423767|ref|XP_002277238.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297737931|emb|CBI27132.3| unnamed protein product [Vitis vinifera]
          Length = 1032

 Score = 40.0 bits (92), Expect = 0.55,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           +L  GPPG GKT LA+ +A E G NF S +G  +     GD   L   L          +
Sbjct: 779 ILLFGPPGTGKTLLAKALATEAGANFISVTGSNLTSKWFGDAEKLTKALFSFAGKLAPVI 838

Query: 109 LFIDEIHRL 117
           +F+DE+  L
Sbjct: 839 IFVDEVDSL 847


>gi|212541869|ref|XP_002151089.1| DNA replication factor C subunit Rfc3, putative [Penicillium
           marneffei ATCC 18224]
 gi|210065996|gb|EEA20089.1| DNA replication factor C subunit Rfc3, putative [Penicillium
           marneffei ATCC 18224]
          Length = 397

 Score = 40.0 bits (92), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           RP +L+E  G  +  + +  FI++ +     L H+L  GPPG GKTT    +AR +
Sbjct: 51  RPSSLDEVQGHQDILATINRFIDSHR-----LPHLLLYGPPGTGKTTTILALARRI 101


>gi|163793183|ref|ZP_02187159.1| ATP-dependent protease Clp [alpha proteobacterium BAL199]
 gi|159181829|gb|EDP66341.1| ATP-dependent protease Clp [alpha proteobacterium BAL199]
          Length = 424

 Score = 40.0 bits (92), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L +GP G GKT LAQ +AR + V F       + +AG +   + N+         
Sbjct: 113 AKSNILLIGPTGCGKTLLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 172

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDE+ ++S
Sbjct: 173 YNVERAQRGIVYIDEVDKIS 192


>gi|119589558|gb|EAW69152.1| protease, serine, 15, isoform CRA_b [Homo sapiens]
          Length = 950

 Score = 40.0 bits (92), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 87/207 (42%), Gaps = 33/207 (15%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLA 71
           S E+ D++  +    E+  G  +    +  FI  ++ R      +L F GPPG+GKT++A
Sbjct: 465 SNENLDLARAQAVLEEDHYGMEDVKKRILEFIAVSQLRGSTQGKILCFYGPPGVGKTSIA 524

Query: 72  QVVARELGVN-FRSTSGP--------------VIAKAGDLAALLTNLEDRD-VLFIDEIH 115
           + +AR L    FR + G               V A  G +   L   +  + ++ IDE+ 
Sbjct: 525 RSIARALNREYFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLILIDEVD 584

Query: 116 RL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           ++        S  + E+L P      LD  +        V ++LS+   I        + 
Sbjct: 585 KIGRGYQGDPSSALLELLDPEQNANFLDHYL-------DVPVDLSKVLFICTANVTDTIP 637

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQR 194
            PL+DR  + I ++ Y  ++   I +R
Sbjct: 638 EPLRDRMEM-INVSGYVAQEKLAIAER 663


>gi|187478000|ref|YP_786024.1| ATP-dependent protease ATP-binding subunit ClpX [Bordetella avium
           197N]
 gi|123515222|sp|Q2L255|CLPX_BORA1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|115422586|emb|CAJ49111.1| ATP-dependent Clp protease ATP-binding subunit [Bordetella avium
           197N]
          Length = 432

 Score = 40.0 bits (92), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104
           +++ +GP G GKT LAQ +AR L V F       + +AG +          LL N     
Sbjct: 115 NIMLIGPTGSGKTLLAQTLARMLNVPFVMADATTLTEAGYVGEDVENIIQKLLQNCNYDV 174

Query: 105 ---DRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 175 EKAQRAIIYIDEIDKIS 191


>gi|103488442|ref|YP_618003.1| ATPase [Sphingopyxis alaskensis RB2256]
 gi|98978519|gb|ABF54670.1| ATPase associated with various cellular activities, AAA_3
           [Sphingopyxis alaskensis RB2256]
          Length = 298

 Score = 40.0 bits (92), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 74/168 (44%), Gaps = 25/168 (14%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKAGDLAALLTNLEDR-------- 106
           HVL  GPPG  KT LAQ  AR  G++F R    P +     L + L N +          
Sbjct: 20  HVLLEGPPGTAKTLLAQAFARASGLDFGRIQFTPDLMPGDILGSNLFNFQTSSFTLTKGP 79

Query: 107 ---DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
              ++L  DEI+R     +  L  AM++ ++ +  GE P   S      RFT++A    +
Sbjct: 80  IFAELLLADEINRTPPKTQAALLEAMQERRVTIN-GE-PHVMS-----PRFTVLATQNPI 132

Query: 164 ---GLLTNPLQ--DRFGIPIRLNFYEIEDLKTIV-QRGAKLTGLAVTD 205
              G+   P    DRF   + +++   ++ + IV   G +    AV D
Sbjct: 133 EQQGVYPLPEAQLDRFLFKLVVDYPAADEERRIVADHGGRFNSPAVGD 180


>gi|78777221|ref|YP_393536.1| peptidase M41 [Sulfurimonas denitrificans DSM 1251]
 gi|78497761|gb|ABB44301.1| Peptidase M41 [Sulfurimonas denitrificans DSM 1251]
          Length = 547

 Score = 40.0 bits (92), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG+GKT +A+ VA   GV F   SG
Sbjct: 185 VLLVGPPGVGKTMIAKAVANAAGVPFYYQSG 215


>gi|62896685|dbj|BAD96283.1| TATA binding protein interacting protein 49 kDa variant [Homo
          sapiens]
          Length = 456

 Score = 40.0 bits (92), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 31/62 (50%)

Query: 18 DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
          D S L  +      GQ  A     V +E  K++  A   VL  GPPG GKT LA  +A+E
Sbjct: 27 DESGLAKQAASGLVGQENAREACGVTVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQE 86

Query: 78 LG 79
          LG
Sbjct: 87 LG 88


>gi|55741540|ref|NP_001006957.1| katanin p60 ATPase-containing subunit A-like 1 [Rattus norvegicus]
 gi|60389845|sp|Q5XIK7|KATL1_RAT RecName: Full=Katanin p60 ATPase-containing subunit A-like 1;
           Short=Katanin p60 subunit A-like 1; AltName: Full=p60
           katanin-like 1
 gi|53733477|gb|AAH83673.1| Katanin p60 subunit A-like 1 [Rattus norvegicus]
 gi|149034821|gb|EDL89541.1| katanin p60 subunit A-like 1, isoform CRA_a [Rattus norvegicus]
          Length = 488

 Score = 40.0 bits (92), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL VGPPG GKT LA+ VA E G  F + S   +
Sbjct: 242 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTL 275


>gi|24379392|ref|NP_721347.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           mutans UA159]
 gi|290580606|ref|YP_003484998.1| ATP-dependent protease Clp ATPase subunit [Streptococcus mutans
           NN2025]
 gi|46576567|sp|Q8DUI0|CLPX_STRMU RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|24377322|gb|AAN58653.1|AE014935_5 ATP-dependent protease Clp, ATPase subunit ClpX [Streptococcus
           mutans UA159]
 gi|254997505|dbj|BAH88106.1| ATP-dependent protease Clp ATPase subunit [Streptococcus mutans
           NN2025]
          Length = 410

 Score = 40.0 bits (92), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +A+ L V F       + +AG    D+  +L  L        
Sbjct: 113 NILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYNV 172

Query: 104 --EDRDVLFIDEIHRLS 118
              +R ++++DEI +++
Sbjct: 173 ERAERGIIYVDEIDKIA 189


>gi|86137327|ref|ZP_01055904.1| ATP-dependent protease ATP-binding subunit [Roseobacter sp. MED193]
 gi|85825662|gb|EAQ45860.1| ATP-dependent protease ATP-binding subunit [Roseobacter sp. MED193]
          Length = 422

 Score = 40.0 bits (92), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+         
Sbjct: 111 AKSNILLIGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASE 170

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDE+ +++
Sbjct: 171 YNVERAQRGIVYIDEVDKIT 190


>gi|289422494|ref|ZP_06424337.1| ATP-dependent metallopeptidase HflB [Peptostreptococcus anaerobius
           653-L]
 gi|289157066|gb|EFD05688.1| ATP-dependent metallopeptidase HflB [Peptostreptococcus anaerobius
           653-L]
          Length = 625

 Score = 40.0 bits (92), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           +L VGPPG GKT L++ VA E GV F S SG
Sbjct: 199 ILMVGPPGTGKTYLSRAVAGEAGVPFFSISG 229


>gi|255527671|ref|ZP_05394530.1| Sigma 54 interacting domain protein [Clostridium carboxidivorans
           P7]
 gi|296186812|ref|ZP_06855213.1| ATP-dependent protease, Lon family [Clostridium carboxidivorans P7]
 gi|255508651|gb|EET85032.1| Sigma 54 interacting domain protein [Clostridium carboxidivorans
           P7]
 gi|296048526|gb|EFG87959.1| ATP-dependent protease, Lon family [Clostridium carboxidivorans P7]
          Length = 638

 Score = 40.0 bits (92), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 11/71 (15%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           LS+N+       S+LRP    E  GQ  A  ++      +K  +    H++  GPPG+GK
Sbjct: 157 LSKNIQ------SILRPGCFSEIVGQERAIKSI-----LSKLASPYPQHIILYGPPGVGK 205

Query: 68  TTLAQVVAREL 78
           TT A++   E+
Sbjct: 206 TTAARLALEEV 216


>gi|240115851|ref|ZP_04729913.1| ATP-dependent protease ATP-binding subunit ClpX [Neisseria
           gonorrhoeae PID18]
 gi|254493894|ref|ZP_05107065.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae
           1291]
 gi|260440333|ref|ZP_05794149.1| ATP-dependent protease ATP-binding subunit ClpX [Neisseria
           gonorrhoeae DGI2]
 gi|268601527|ref|ZP_06135694.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae
           PID18]
 gi|291043626|ref|ZP_06569342.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae
           DGI2]
 gi|226512934|gb|EEH62279.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae
           1291]
 gi|268585658|gb|EEZ50334.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae
           PID18]
 gi|291012089|gb|EFE04078.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae
           DGI2]
          Length = 414

 Score = 40.0 bits (92), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +AR+L V F       + +AG    D+  ++T L        
Sbjct: 114 NILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDV 173

Query: 104 --EDRDVLFIDEIHRLS 118
                 +++IDEI ++S
Sbjct: 174 EKAQHGIVYIDEIDKIS 190


>gi|255659637|ref|ZP_05405046.1| cell division protein FtsH [Mitsuokella multacida DSM 20544]
 gi|260848199|gb|EEX68206.1| cell division protein FtsH [Mitsuokella multacida DSM 20544]
          Length = 684

 Score = 40.0 bits (92), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E  V F S +G    +      A  +  L    +++   +
Sbjct: 200 VLLVGPPGTGKTMLAKAVAGEANVPFFSIAGSEFVEMFVGMGASKVRDLFKQAKEKAPCI 259

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 260 VFIDEI 265


>gi|163857102|ref|YP_001631400.1| ATP-dependent protease ATP-binding subunit ClpX [Bordetella petrii
           DSM 12804]
 gi|229889853|sp|A9IR50|CLPX_BORPD RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|163260830|emb|CAP43132.1| ATP-dependent Clp protease ATP-binding subunit [Bordetella petrii]
          Length = 432

 Score = 40.0 bits (92), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104
           +++ +GP G GKT LAQ +AR L V F       + +AG +          LL N     
Sbjct: 115 NIMLIGPTGSGKTLLAQTLARMLNVPFVMADATTLTEAGYVGEDVENIIQKLLQNCNYEV 174

Query: 105 ---DRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 175 EKAQRAIIYIDEIDKIS 191


>gi|156054484|ref|XP_001593168.1| hypothetical protein SS1G_06090 [Sclerotinia sclerotiorum 1980]
 gi|154703870|gb|EDO03609.1| hypothetical protein SS1G_06090 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 774

 Score = 40.0 bits (92), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F   SG       V   A  +  L T  + +   +
Sbjct: 333 VLLVGPPGTGKTLLARAVAGEAGVPFFFMSGSEFDEIYVGVGAKRVRELFTAAKSKSPAI 392

Query: 109 LFIDEI 114
           +FIDE+
Sbjct: 393 IFIDEL 398


>gi|76802726|ref|YP_330821.1| AAA-type ATPase (transitional ATPase homolog) [Natronomonas
           pharaonis DSM 2160]
 gi|76558591|emb|CAI50183.1| AAA-type ATPase (transitional ATPase homolog) [Natronomonas
           pharaonis DSM 2160]
          Length = 702

 Score = 40.0 bits (92), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLAALLTNLEDR------DV 108
           +L  GPPG GKT LA+ +A E  VNF S +GP +     G+    +  + DR       +
Sbjct: 485 ILLYGPPGTGKTLLARALAGESDVNFVSVAGPELLDKYVGESEKAVREVFDRARQAAPAI 544

Query: 109 LFIDEIHRLS 118
           +F DEI  L+
Sbjct: 545 VFFDEIDALA 554



 Score = 38.9 bits (89), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           VL  GPPG GKT +A+ VA E+  +F    GP I     G+    L    +R       V
Sbjct: 226 VLLYGPPGTGKTLIAKAVANEVDAHFEVIDGPEIVSKYKGESEERLRETFERAVDNQPAV 285

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 286 VFIDEIDSIA 295


>gi|12852148|dbj|BAB29293.1| unnamed protein product [Mus musculus]
          Length = 389

 Score = 40.0 bits (92), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 57/124 (45%), Gaps = 23/124 (18%)

Query: 8   LSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV--------L 58
           L  N+S ED  ++S        E  G  E   +L+  IE      E    V        L
Sbjct: 118 LVYNMSHEDPGNVSY------SEIGGLSEQIRDLREVIELPLTNPELFQRVGIIPPKGCL 171

Query: 59  FVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA-GDLAALLTNLED--RD----VLF 110
             GPPG GKT LA+ VA +L  NF +  S  ++ K  G+ A L+  + +  RD    ++F
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYVRDHQPCIIF 231

Query: 111 IDEI 114
           +DEI
Sbjct: 232 MDEI 235


>gi|71003982|ref|XP_756657.1| hypothetical protein UM00510.1 [Ustilago maydis 521]
 gi|46095729|gb|EAK80962.1| hypothetical protein UM00510.1 [Ustilago maydis 521]
          Length = 398

 Score = 40.0 bits (92), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-----RSTSGPVIAKAGDLAALLTNLEDR---DV 108
           VL  GPPG GKT LA+ +A+E G  F      + +     ++  L A L +L  +    +
Sbjct: 124 VLLYGPPGTGKTMLAKALAKESGATFINMHVSTLTNKWFGESNKLVAALFSLARKLQPSI 183

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 184 IFIDEI 189


>gi|323498277|ref|ZP_08103279.1| ATP-dependent protease ATP-binding subunit ClpX [Vibrio sinaloensis
           DSM 21326]
 gi|323316705|gb|EGA69714.1| ATP-dependent protease ATP-binding subunit ClpX [Vibrio sinaloensis
           DSM 21326]
          Length = 427

 Score = 40.0 bits (92), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LA+ +AR L V F       + +AG +   + N+            
Sbjct: 116 NILLIGPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 175

Query: 104 --EDRDVLFIDEIHRLS 118
              +R +++IDEI ++S
Sbjct: 176 AKAERGIVYIDEIDKIS 192


>gi|270292403|ref|ZP_06198614.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           sp. M143]
 gi|270278382|gb|EFA24228.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           sp. M143]
          Length = 410

 Score = 40.0 bits (92), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +A+ L V F       + +AG    D+  +L  L        
Sbjct: 114 NILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNI 173

Query: 104 --EDRDVLFIDEIHRLS 118
              +R ++++DEI +++
Sbjct: 174 ERAERGIIYVDEIDKIA 190


>gi|261328900|emb|CBH11878.1| AAA ATPase, putative [Trypanosoma brucei gambiense DAL972]
          Length = 795

 Score = 40.0 bits (92), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDRD------V 108
           VL  GPPG  KT LA+ +A E  +NF S  GP V +K  GD    + ++  R       V
Sbjct: 565 VLLYGPPGCSKTMLAKALANESKMNFVSVKGPEVFSKWVGDSEKAVRDIFARARAAAPCV 624

Query: 109 LFIDEI 114
           +FIDE+
Sbjct: 625 VFIDEL 630


>gi|257387362|ref|YP_003177135.1| proteasome-activating nucleotidase [Halomicrobium mukohataei DSM
           12286]
 gi|257169669|gb|ACV47428.1| 26S proteasome subunit P45 family [Halomicrobium mukohataei DSM
           12286]
          Length = 406

 Score = 40.0 bits (92), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL----EDRD--V 108
           VL  GPPG GKT LA+ VA E    F   +G  + +   G+ A L+ +L     DR+  V
Sbjct: 188 VLLHGPPGTGKTMLAKAVANETDATFIKMAGSELVRKFIGEGARLVRDLFELAADREPAV 247

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 248 IFIDEIDAIA 257


>gi|256028616|ref|ZP_05442450.1| ATP-dependent protease ATP-binding subunit ClpX [Fusobacterium sp.
           D11]
 gi|289766534|ref|ZP_06525912.1| ATP-dependent Clp protease ATP-binding subunit clpX [Fusobacterium
           sp. D11]
 gi|289718089|gb|EFD82101.1| ATP-dependent Clp protease ATP-binding subunit clpX [Fusobacterium
           sp. D11]
          Length = 424

 Score = 40.0 bits (92), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 64/145 (44%), Gaps = 31/145 (21%)

Query: 4   REGLLSRNVSQEDADISLLRP----RTLEEFT-GQVEACSNLKVFIEAAKAR--AEALD- 55
           R+G  S N + +   I LL+P      L+E+  GQ EA   L V +     R      D 
Sbjct: 57  RDGKSSNNKNYK-GKIELLKPVEIKAKLDEYVVGQDEAKKVLSVAVYNHYKRILNNGQDD 115

Query: 56  --------HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL 103
                   +VL VGP G GKT LAQ +AR L V F       + +AG    D+  +L  L
Sbjct: 116 DGVELQKSNVLLVGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGDDVENVLVRL 175

Query: 104 ----------EDRDVLFIDEIHRLS 118
                      +R +++IDE  +++
Sbjct: 176 IQACNYDIPNAERGIIYIDEFDKIA 200


>gi|254507763|ref|ZP_05119894.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           parahaemolyticus 16]
 gi|219549288|gb|EED26282.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           parahaemolyticus 16]
          Length = 427

 Score = 40.0 bits (92), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LA+ +AR L V F       + +AG +   + N+            
Sbjct: 116 NILLIGPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 175

Query: 104 --EDRDVLFIDEIHRLS 118
              +R +++IDEI ++S
Sbjct: 176 AKAERGIVYIDEIDKIS 192


>gi|195028710|ref|XP_001987219.1| GH20092 [Drosophila grimshawi]
 gi|193903219|gb|EDW02086.1| GH20092 [Drosophila grimshawi]
          Length = 754

 Score = 40.0 bits (92), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 7/70 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  EA   LK  +E  K+  +  +        VL VGPPG GKT LA+ VA E 
Sbjct: 317 TFDDVKGCDEAKQELKEVVEFLKSPDKFSNLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 376

Query: 79  GVNFRSTSGP 88
            V F   +GP
Sbjct: 377 NVPFFHAAGP 386


>gi|189095436|ref|YP_001936449.1| cell division protein [Heterosigma akashiwo]
 gi|310943132|sp|B2XTF7|FTSH_HETA2 RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|157694779|gb|ABV66055.1| ATP-dependent Zn protease; cell division protein FtsH homolog
           [Heterosigma akashiwo]
 gi|157778010|gb|ABV70196.1| ATP-dependent Zn protease [Heterosigma akashiwo]
          Length = 663

 Score = 40.0 bits (92), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL VGPPG GKT LA+ +A E  V F + SG    +   G  AA + NL ++       +
Sbjct: 240 VLLVGPPGTGKTLLAKAIAGEAKVPFINISGSEFVEMFVGVGAARVRNLFEKAKQDTPCI 299

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 300 IFIDEI 305


>gi|168704277|ref|ZP_02736554.1| ATP-dependent protease ATP-binding subunit [Gemmata obscuriglobus
           UQM 2246]
          Length = 433

 Score = 40.0 bits (92), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 61/141 (43%), Gaps = 31/141 (21%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++LFVGP G GKT LA+ +A+ L V F       + +AG +   + NL            
Sbjct: 130 NILFVGPTGSGKTLLARTLAKILDVPFAIGDATTLTEAGYVGEDVENLLLKLLHAADFDI 189

Query: 104 --EDRDVLFIDEIHRLS------IIVEEILYPAMEDFQLDLMVG-----------EGPSA 144
               R +++IDEI +++       I  ++    ++   L ++ G           + P  
Sbjct: 190 EAAQRGIIYIDEIDKIAKTSQNVSITRDVSGEGVQQALLKMLEGTVSNVPPQGGRKHPEQ 249

Query: 145 RSVKINLSRFTLIAATTRVGL 165
           + ++++ S    I   T VGL
Sbjct: 250 QYIQVDTSNILFICGGTFVGL 270


>gi|114767021|ref|ZP_01445929.1| ATP-dependent protease ATP-binding subunit [Pelagibaca bermudensis
           HTCC2601]
 gi|114540805|gb|EAU43869.1| ATP-dependent protease ATP-binding subunit [Roseovarius sp.
           HTCC2601]
          Length = 421

 Score = 40.0 bits (92), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+         
Sbjct: 110 AKSNILLIGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSSE 169

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDE+ +++
Sbjct: 170 YNVERAQRGIVYIDEVDKIT 189


>gi|158321197|ref|YP_001513704.1| sporulation protease LonB [Alkaliphilus oremlandii OhILAs]
 gi|158141396|gb|ABW19708.1| Sporulation protease LonB [Alkaliphilus oremlandii OhILAs]
          Length = 571

 Score = 40.0 bits (92), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 5/63 (7%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP T+E+  GQ +    L+  +     +     HV+  GPPG+GKT  A+V+  E   N
Sbjct: 61  VRPSTIEDIIGQEDGIKALRAALCTNNPQ-----HVIIYGPPGVGKTAAARVILEEAKRN 115

Query: 82  FRS 84
            +S
Sbjct: 116 HQS 118


>gi|86742989|ref|YP_483389.1| Mername-AA223 peptidase [Frankia sp. CcI3]
 gi|86569851|gb|ABD13660.1| membrane protease FtsH catalytic subunit [Frankia sp. CcI3]
          Length = 753

 Score = 40.0 bits (92), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 30/58 (51%), Gaps = 4/58 (6%)

Query: 34  VEACSNLKVFIEAAKA----RAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           +E    +K F+E         A+    VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 167 IEELEEIKEFLENPGKFQAIGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISG 224


>gi|72390405|ref|XP_845497.1| valosin-containing protein homolog [Trypanosoma brucei TREU927]
 gi|62360347|gb|AAX80763.1| valosin-containing protein homolog, putative [Trypanosoma brucei]
 gi|70802032|gb|AAZ11938.1| valosin-containing protein homolog, putative [Trypanosoma brucei
           brucei strain 927/4 GUTat10.1]
          Length = 795

 Score = 40.0 bits (92), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDRD------V 108
           VL  GPPG  KT LA+ +A E  +NF S  GP V +K  GD    + ++  R       V
Sbjct: 565 VLLYGPPGCSKTMLAKALANESKMNFVSVKGPEVFSKWVGDSEKAVRDIFARARAAAPCV 624

Query: 109 LFIDEI 114
           +FIDE+
Sbjct: 625 VFIDEL 630


>gi|332685804|ref|YP_004455578.1| cell division protein FtsH [Melissococcus plutonius ATCC 35311]
 gi|332369813|dbj|BAK20769.1| cell division protein FtsH [Melissococcus plutonius ATCC 35311]
          Length = 711

 Score = 40.0 bits (92), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 222 VLLEGPPGTGKTLLAKAVAGEAGVPFYSISG 252


>gi|327402293|ref|YP_004343131.1| ATP-dependent protease La [Fluviicola taffensis DSM 16823]
 gi|327317801|gb|AEA42293.1| ATP-dependent protease La [Fluviicola taffensis DSM 16823]
          Length = 808

 Score = 40.0 bits (92), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 67/162 (41%), Gaps = 32/162 (19%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA---GDLAALLTNLEDR------ 106
           + F GPPG+GKT+L + VA  LG  + R + G V  +A   G     +  +  R      
Sbjct: 385 LCFYGPPGVGKTSLGKSVAEALGRKYVRMSLGGVHDEAEIRGHRKTYIGAMPGRVIQHLK 444

Query: 107 ------DVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152
                  V  +DEI +L        S  + E+L P       D  V         + +LS
Sbjct: 445 KAGSANPVFVLDEIDKLGRSNHGDPSSALLEVLDPEQNSSFYDNYV-------ETEFDLS 497

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           +   IA    +  +  PL DR  I I +N Y IE+   I ++
Sbjct: 498 KVMFIATANNLSSVQGPLLDRMEI-IEVNGYTIEEKIEIAKK 538


>gi|323465809|gb|ADX69496.1| M41 family endopeptidase FtsH [Lactobacillus helveticus H10]
          Length = 726

 Score = 40.0 bits (92), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 33/66 (50%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108
           VL  GPPG GKT LA+ VA E  V F S SG       V   A  +  L  N +     +
Sbjct: 234 VLLEGPPGTGKTLLARAVAGEANVPFYSISGSDFVEMFVGVGASRVRDLFNNAKKNAPSI 293

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 294 IFIDEI 299


>gi|323127623|gb|ADX24920.1| DNA polymerase III subunits gamma and tau [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 559

 Score = 40.0 bits (92), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 8/91 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           R +T +E  GQ    + LK  +E+ K     + H  LF GP G GKT+ A++ A+ +   
Sbjct: 10  RSQTFDEMVGQSVISTTLKQAVESGK-----ISHAYLFSGPRGTGKTSAAKIFAKAMNCP 64

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID 112
            +    P      D+   +TN    DV+ ID
Sbjct: 65  NQVNGEPC--NQCDICRDITNGSLEDVIEID 93


>gi|319956172|ref|YP_004167435.1| ATP-dependent proteinase [Nitratifractor salsuginis DSM 16511]
 gi|319418576|gb|ADV45686.1| ATP-dependent proteinase [Nitratifractor salsuginis DSM 16511]
          Length = 805

 Score = 40.0 bits (92), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 69/163 (42%), Gaps = 38/163 (23%)

Query: 59  FVGPPGLGKTTLAQVVAR------------------ELGVNFRSTSGPVIAKAGDLAALL 100
           F GPPG+GKT+LA  +A+                  EL  + R+  G   A  G +   L
Sbjct: 364 FAGPPGVGKTSLANSIAKALDRPLVRIALGGLEDVNELRGHRRTYVG---AMPGRIVQGL 420

Query: 101 TNLEDRD-VLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINL 151
              +  D V+ +DEI ++        +  + EIL P       D  +       +  I+L
Sbjct: 421 IEAKTMDPVMVLDEIDKVGRTHRGDPTSALLEILDPEQNTHYRDYYL-------NFSIDL 473

Query: 152 SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           S+   IA    +G +  PL+DR  I I +N Y  E+   I +R
Sbjct: 474 SKVVFIATANELGYIPAPLRDRMEI-IIINSYTPEEKFEIARR 515


>gi|312882506|ref|ZP_07742247.1| ATP-dependent protease ATP-binding subunit ClpX [Vibrio
           caribbenthicus ATCC BAA-2122]
 gi|309369906|gb|EFP97417.1| ATP-dependent protease ATP-binding subunit ClpX [Vibrio
           caribbenthicus ATCC BAA-2122]
          Length = 427

 Score = 40.0 bits (92), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LA+ +AR L V F       + +AG +   + N+            
Sbjct: 116 NILLIGPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 175

Query: 104 --EDRDVLFIDEIHRLS 118
              +R +++IDEI ++S
Sbjct: 176 AKAERGIVYIDEIDKIS 192


>gi|299471164|emb|CBN79021.1| ATP-dependent protease La [Ectocarpus siliculosus]
          Length = 1170

 Score = 40.0 bits (92), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 93/233 (39%), Gaps = 42/233 (18%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTS-GPVIAKA--------------GDLAALLT 101
           +  VGPPG+GKT+L + +A  L   F+  S G V  +A              G +   L 
Sbjct: 416 LCLVGPPGVGKTSLGRSIAAALNRKFQRLSLGGVHDEAEIRGHRRTYIGAMPGGIVRCLR 475

Query: 102 NLEDRD-VLFIDEIHRL---------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINL 151
               R+ V+ +DE+ ++         S  + E+L P   D   D  V       +V  +L
Sbjct: 476 RAGTRNPVMLLDEVDKIGSNVRGGDPSAALLEVLDPEQNDSFTDHYV-------NVPFDL 528

Query: 152 SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEI 211
           S    +A   +V  +  PL DR  + I +  Y +E+ K  +     +      +    E 
Sbjct: 529 SSVLFVATANKVDAIPEPLLDRLEV-IHIPGYTLEE-KVKIAEAYLIPKQMKKNGVGAEH 586

Query: 212 AMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLD 264
            +  R T      +LR    +   A  + + RE+  AA+ R    K+G  Q D
Sbjct: 587 MLLPRST------VLRVASSYTREAGVRQLEREL--AAVCRHVALKVGVWQQD 631


>gi|296134052|ref|YP_003641299.1| Sigma 54 interacting domain protein [Thermincola sp. JR]
 gi|296032630|gb|ADG83398.1| Sigma 54 interacting domain protein [Thermincola potens JR]
          Length = 560

 Score = 40.0 bits (92), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 5/59 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           RP T  E  GQ E    LK  +     +     HV+  GPPG+GKT  A++V  E   N
Sbjct: 68  RPSTFNEIVGQQEGIKALKAALCGPNPQ-----HVIIYGPPGVGKTAAARLVMEEAKKN 121


>gi|295102377|emb|CBK99922.1| ATP-dependent metalloprotease FtsH [Faecalibacterium prausnitzii
           L2-6]
          Length = 611

 Score = 40.0 bits (92), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--V 108
           +L VGPPG GKT LA+ VA E  V F S SG    +      A  +  L    +++   +
Sbjct: 202 ILLVGPPGTGKTMLAKAVAGESNVPFFSISGSEFVEMFVGMGASKVRDLFKQAKEKAPCI 261

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 262 VFIDEI 267


>gi|295084718|emb|CBK66241.1| MoxR-like ATPases [Bacteroides xylanisolvens XB1A]
          Length = 324

 Score = 40.0 bits (92), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 24/168 (14%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKAGDLAALLTNLEDR-------- 106
           HVL  G PG+ KT LA++ AR +  +F R    P +  +  L   + N++          
Sbjct: 48  HVLIEGVPGVAKTLLARLTARLIDADFSRVQFTPDLMPSDVLGTTVFNMKTNGFDFHQGP 107

Query: 107 ---DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
              D++ +DEI+R     +  L+  ME+ Q+ +   +G + R   +    +T++A    V
Sbjct: 108 IFADIVLVDEINRAPAKTQAALFEVMEERQISI---DGTTHRMGDL----YTILATQNPV 160

Query: 164 ---GLLTNPLQ--DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDE 206
              G    P    DRF + I +++  +E+   I++R      L   D+
Sbjct: 161 EQEGTYKLPEAQLDRFLMKITMDYPSLEEEVNILERHHTNAALVKLDD 208


>gi|294816606|ref|ZP_06775248.1| Putative sporulation protein K-like protein [Streptomyces
            clavuligerus ATCC 27064]
 gi|294321421|gb|EFG03556.1| Putative sporulation protein K-like protein [Streptomyces
            clavuligerus ATCC 27064]
          Length = 1135

 Score = 40.0 bits (92), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 72/191 (37%), Gaps = 39/191 (20%)

Query: 55   DHVLFVGPPGLGKTTLAQVVARELG------------VNFRSTSGPVIAKAGDLAALLTN 102
            +H++F GPPG GKTT+A++    L             V+     G  I     L   +  
Sbjct: 912  NHLVFAGPPGTGKTTVARLYGELLSSLEVLPRGQLVEVSRADLVGRYIGHTAQLTKEVFQ 971

Query: 103  LEDRDVLFIDEIHRL---------SIIVEE---ILYPAMEDFQLDLMVGEGPSARSVKIN 150
                 VLFIDE + L         S   +E    L   MED + +++V     A      
Sbjct: 972  RALGGVLFIDEAYTLTPESGGPGSSDFGQEAVDTLLKLMEDHRDEVVV----IAAGYTRE 1027

Query: 151  LSRFTLIAATTRVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAAC 209
            + RF          L +NP L  RF   +    Y  ++L TIVQR A   G     E A 
Sbjct: 1028 MDRF----------LGSNPGLASRFTRTVEFPNYSSDELVTIVQRHAADNGYDCAPETAA 1077

Query: 210  EIAMRSRGTPR 220
             +       PR
Sbjct: 1078 GLHTHFETIPR 1088


>gi|289743537|gb|ADD20516.1| replication factor C subunit RFC2 [Glossina morsitans morsitans]
          Length = 333

 Score = 40.0 bits (92), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 6/66 (9%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR-E 77
          I   RP   +E  G  E    L VF     A      +++  GPPG+GKTT  Q +AR  
Sbjct: 22 IEKYRPTKFDEIVGNEETVCRLSVFATQGNA-----PNIIIAGPPGVGKTTTIQCLARIL 76

Query: 78 LGVNFR 83
          LG +F+
Sbjct: 77 LGDSFK 82


>gi|289613128|emb|CBI59901.1| unnamed protein product [Sordaria macrospora]
          Length = 743

 Score = 40.0 bits (92), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 66/147 (44%), Gaps = 23/147 (15%)

Query: 43  FIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN-FRSTSGPVIAKAGDLAALLT 101
           F +  K + + L  VL  GPPG+GKT  A+ VA  +    +  +SG +   + +L A LT
Sbjct: 506 FDDIVKGKGQGLVCVLH-GPPGVGKTLTAECVAEYVQRPLYMVSSGDLGCVSSELDAQLT 564

Query: 102 NLED-----RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN-LSRFT 155
            + D     R VL IDE     + +E+    A+ D   + MV       SV +  L  +T
Sbjct: 565 KIMDMTATWRAVLLIDEA---DVFLEQ---RALHDLHRNAMV-------SVFLRVLEYYT 611

Query: 156 --LIAATTRVGLLTNPLQDRFGIPIRL 180
             L   T RV       + R  IPIR 
Sbjct: 612 GILFLTTNRVTTFDEAFKSRIHIPIRY 638


>gi|262394814|ref|YP_003286668.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio sp.
           Ex25]
 gi|262338408|gb|ACY52203.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio sp.
           Ex25]
          Length = 426

 Score = 40.0 bits (92), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LA+ +AR L V F       + +AG +   + N+            
Sbjct: 116 NILLIGPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 175

Query: 104 --EDRDVLFIDEIHRLS 118
              +R +++IDEI ++S
Sbjct: 176 AKAERGIVYIDEIDKIS 192


>gi|261253458|ref|ZP_05946031.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           orientalis CIP 102891]
 gi|260936849|gb|EEX92838.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           orientalis CIP 102891]
          Length = 427

 Score = 40.0 bits (92), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LA+ +AR L V F       + +AG +   + N+            
Sbjct: 116 NILLIGPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 175

Query: 104 --EDRDVLFIDEIHRLS 118
              +R +++IDEI ++S
Sbjct: 176 AKAERGIVYIDEIDKIS 192


>gi|260495116|ref|ZP_05815245.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Fusobacterium
           sp. 3_1_33]
 gi|260197559|gb|EEW95077.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Fusobacterium
           sp. 3_1_33]
          Length = 424

 Score = 40.0 bits (92), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 64/145 (44%), Gaps = 31/145 (21%)

Query: 4   REGLLSRNVSQEDADISLLRP----RTLEEFT-GQVEACSNLKVFIEAAKAR--AEALD- 55
           R+G  S N + +   I LL+P      L+E+  GQ EA   L V +     R      D 
Sbjct: 57  RDGKSSNNKNYK-GKIELLKPVEIKAKLDEYVVGQDEAKKVLSVAVYNHYKRILNNGQDD 115

Query: 56  --------HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL 103
                   +VL VGP G GKT LAQ +AR L V F       + +AG    D+  +L  L
Sbjct: 116 DGVELQKSNVLLVGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGDDVENVLVRL 175

Query: 104 ----------EDRDVLFIDEIHRLS 118
                      +R +++IDE  +++
Sbjct: 176 IQACNYDIPNAERGIIYIDEFDKIA 200


>gi|218197157|gb|EEC79584.1| hypothetical protein OsI_20758 [Oryza sativa Indica Group]
          Length = 495

 Score = 40.0 bits (92), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 14/81 (17%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LA+ +AR   V F       I +AG    D+ +++ NL        
Sbjct: 112 NILLIGPTGSGKTLLAKTLARFADVPFVIADATAITQAGYSGEDVESIICNLLAAAKFNV 171

Query: 104 --EDRDVLFIDEIHRLSIIVE 122
              +R +++IDE+ +L   VE
Sbjct: 172 EATERGIVYIDEVDKLIKKVE 192


>gi|159478022|ref|XP_001697103.1| membrane AAA-metalloprotease [Chlamydomonas reinhardtii]
 gi|158274577|gb|EDP00358.1| membrane AAA-metalloprotease [Chlamydomonas reinhardtii]
          Length = 689

 Score = 40.0 bits (92), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
            L VGPPG GKT LA+ +A E GV F S SG
Sbjct: 252 CLLVGPPGTGKTLLAKAIAGEAGVPFFSVSG 282


>gi|160902924|ref|YP_001568505.1| ATP-dependent protease ATP-binding subunit [Petrotoga mobilis SJ95]
 gi|160360568|gb|ABX32182.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Petrotoga
           mobilis SJ95]
          Length = 409

 Score = 40.0 bits (92), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           +VL +GP G GKT +AQ +AR L V F       + +AG +   + N+            
Sbjct: 108 NVLLIGPTGTGKTLIAQTLARILDVPFAIADATTLTEAGYVGEDVENVILRLLQACDYDV 167

Query: 104 --EDRDVLFIDEIHRLS 118
              ++ +++IDEI ++S
Sbjct: 168 KKAEKGIIYIDEIDKIS 184


>gi|51894333|ref|YP_077024.1| cell division protein [Symbiobacterium thermophilum IAM 14863]
 gi|81387870|sp|Q67JH0|FTSH3_SYMTH RecName: Full=ATP-dependent zinc metalloprotease FtsH 3
 gi|51858022|dbj|BAD42180.1| cell division protein [Symbiobacterium thermophilum IAM 14863]
          Length = 626

 Score = 40.0 bits (92), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 193 VLLYGPPGTGKTLLAKAVAGEAGVPFFSISG 223


>gi|33592843|ref|NP_880487.1| ATP-dependent protease ATP-binding subunit [Bordetella pertussis
           Tohama I]
 gi|46576479|sp|Q7VXI6|CLPX_BORPE RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|33572491|emb|CAE42063.1| ATP-dependent Clp protease ATP-binding subunit [Bordetella
           pertussis Tohama I]
 gi|332382256|gb|AEE67103.1| ATP-dependent protease ATP-binding subunit ClpX [Bordetella
           pertussis CS]
          Length = 434

 Score = 40.0 bits (92), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104
           +++ +GP G GKT LAQ +AR L V F       + +AG +          LL N     
Sbjct: 115 NIMLIGPTGSGKTLLAQTLARMLNVPFVMADATTLTEAGYVGEDVENIIQKLLQNCNYDV 174

Query: 105 ---DRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 175 EKAQRAIIYIDEIDKIS 191


>gi|84514770|ref|ZP_01002133.1| Chaperonin clpA/B [Loktanella vestfoldensis SKA53]
 gi|84510929|gb|EAQ07383.1| Chaperonin clpA/B [Loktanella vestfoldensis SKA53]
          Length = 772

 Score = 40.0 bits (92), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 72/162 (44%), Gaps = 23/162 (14%)

Query: 9   SRNVSQEDADISLLRPRTLEEFT-GQVEACSNLKVFIEAAKAR----AEALDHVLFVGPP 63
           ++NVS++DA++     ++L+    GQ  A   L   I+ A+A      + + + LF GP 
Sbjct: 446 AKNVSKDDAEVLKDLEKSLKRVVFGQDRAIEALSSAIKLARAGLREPEKPIGNYLFAGPT 505

Query: 64  GLGKTTLAQVVARELGVNF---------------RSTSGPVIAKAGDLAALLTNLEDRD- 107
           G+GKT +A+ +A  LGV                 R    P      D   +LT+  D++ 
Sbjct: 506 GVGKTEVAKQLADTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGMLTDGVDQNP 565

Query: 108 --VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSV 147
             VL +DE+ +    V  IL   M+  +L    G     R+V
Sbjct: 566 HCVLLLDEMEKAHPDVYNILLQVMDHGKLTDHNGRTTDFRNV 607


>gi|118580667|ref|YP_901917.1| ATP-dependent metalloprotease FtsH [Pelobacter propionicus DSM
           2379]
 gi|118503377|gb|ABK99859.1| membrane protease FtsH catalytic subunit [Pelobacter propionicus
           DSM 2379]
          Length = 621

 Score = 40.0 bits (92), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL +GPPG GKT LA+ +A E GV F S SG
Sbjct: 192 VLLMGPPGTGKTLLAKAIAGEAGVPFFSISG 222


>gi|116748161|ref|YP_844848.1| ATP-dependent protease La [Syntrophobacter fumaroxidans MPOB]
 gi|302425112|sp|A0LG61|LON2_SYNFM RecName: Full=Lon protease 2; AltName: Full=ATP-dependent protease
           La 2
 gi|116697225|gb|ABK16413.1| ATP-dependent protease La [Syntrophobacter fumaroxidans MPOB]
          Length = 790

 Score = 40.0 bits (92), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 111/260 (42%), Gaps = 53/260 (20%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA---GDLAALLTNLEDR------ 106
           + FVGPPG+GKT+L Q +AR LG  F R + G V  +A   G     +  L  R      
Sbjct: 358 LCFVGPPGVGKTSLGQSIARTLGRKFLRISLGGVRDEAEIRGHRRTYVGALPGRIVQGLR 417

Query: 107 ------DVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152
                  V  +DEI ++        S  + E+L P       D  +G       V  +LS
Sbjct: 418 RVGSNNPVFMLDEIDKIGMDFRGDPSSALLEVLDPEQNFSFSDHYLG-------VPFDLS 470

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL-----KTIVQRGAKLTGLA----- 202
           R   IA    +  +   L+DR  + I +  Y  E+      K +V+R     GL      
Sbjct: 471 RVMFIATGNLLDTVPAALKDRMEV-IEIPGYTAEEKLEIARKFLVERETANHGLTSDHIR 529

Query: 203 VTDEAACEIAMRSRGTPRIAG-RLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
           + ++A  EI    R   R AG R L+  R+ A V   +   + IA+ A   + ID  G  
Sbjct: 530 IGEDAILEII---RSYTREAGVRSLQ--RNLASV--CRNTAKAIAEGASGPIHIDASGIP 582

Query: 262 QL--DLRYLTMIA-RNFGGG 278
           ++   +++L   A R++G G
Sbjct: 583 EILGPVQFLPETATRSWGCG 602


>gi|326445521|ref|ZP_08220255.1| hypothetical protein SclaA2_30862 [Streptomyces clavuligerus ATCC
            27064]
          Length = 1106

 Score = 40.0 bits (92), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 72/191 (37%), Gaps = 39/191 (20%)

Query: 55   DHVLFVGPPGLGKTTLAQVVARELG------------VNFRSTSGPVIAKAGDLAALLTN 102
            +H++F GPPG GKTT+A++    L             V+     G  I     L   +  
Sbjct: 883  NHLVFAGPPGTGKTTVARLYGELLSSLEVLPRGQLVEVSRADLVGRYIGHTAQLTKEVFQ 942

Query: 103  LEDRDVLFIDEIHRL---------SIIVEE---ILYPAMEDFQLDLMVGEGPSARSVKIN 150
                 VLFIDE + L         S   +E    L   MED + +++V     A      
Sbjct: 943  RALGGVLFIDEAYTLTPESGGPGSSDFGQEAVDTLLKLMEDHRDEVVV----IAAGYTRE 998

Query: 151  LSRFTLIAATTRVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAAC 209
            + RF          L +NP L  RF   +    Y  ++L TIVQR A   G     E A 
Sbjct: 999  MDRF----------LGSNPGLASRFTRTVEFPNYSSDELVTIVQRHAADNGYDCAPETAA 1048

Query: 210  EIAMRSRGTPR 220
             +       PR
Sbjct: 1049 GLHTHFETIPR 1059


>gi|322412086|gb|EFY02994.1| DNA polymerase III subunits gamma and tau [Streptococcus
           dysgalactiae subsp. dysgalactiae ATCC 27957]
          Length = 559

 Score = 40.0 bits (92), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 8/91 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           R +T +E  GQ    + LK  +E+ K     + H  LF GP G GKT+ A++ A+ +   
Sbjct: 10  RSQTFDEMVGQSVISTTLKQAVESGK-----ISHAYLFSGPRGTGKTSAAKIFAKAMNCP 64

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID 112
            +    P      D+   +TN    DV+ ID
Sbjct: 65  NQVNGEPC--NQCDICRDITNGSLEDVIEID 93


>gi|300871120|ref|YP_003785992.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Brachyspira
           pilosicoli 95/1000]
 gi|300688820|gb|ADK31491.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brachyspira
           pilosicoli 95/1000]
          Length = 402

 Score = 40.0 bits (92), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALL----------T 101
           +VL +GP G GKT LA+ +A+ L V F       + +AG    D+  +L           
Sbjct: 110 NVLLIGPTGSGKTLLARTLAKALNVPFAIADATTVTEAGYVGDDVENILLRLIQNADGDV 169

Query: 102 NLEDRDVLFIDEIHRLS 118
            L ++ +++IDEI ++S
Sbjct: 170 KLAEKGIIYIDEIDKIS 186


>gi|296237052|ref|XP_002763589.1| PREDICTED: replication factor C subunit 1, partial [Callithrix
           jacchus]
          Length = 827

 Score = 40.0 bits (92), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 17/37 (45%), Positives = 23/37 (62%)

Query: 46  AAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           A K    +   VL  GPPG+GKTT A +V +ELG ++
Sbjct: 641 AGKDDGSSFKAVLLSGPPGVGKTTTASLVCQELGYSY 677


>gi|296116538|ref|ZP_06835148.1| ATP-dependent protease ATP-binding subunit ClpX [Gluconacetobacter
           hansenii ATCC 23769]
 gi|295976750|gb|EFG83518.1| ATP-dependent protease ATP-binding subunit ClpX [Gluconacetobacter
           hansenii ATCC 23769]
          Length = 419

 Score = 40.0 bits (92), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  +++ +GP G GKT LAQ +AR L V F       + +AG +   + N+         
Sbjct: 109 AKSNIMLIGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 168

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDEI ++S
Sbjct: 169 YNVEKAQRGIVYIDEIDKIS 188


>gi|295103468|emb|CBL01012.1| ATP-dependent metalloprotease FtsH [Faecalibacterium prausnitzii
           SL3/3]
          Length = 616

 Score = 40.0 bits (92), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--V 108
           +L VGPPG GKT LA+ VA E  V F S SG    +      A  +  L    +++   +
Sbjct: 203 ILLVGPPGTGKTMLAKAVAGESNVPFFSISGSEFVEMFVGMGASKVRDLFKQAKEKAPCI 262

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 263 VFIDEI 268


>gi|291548433|emb|CBL21541.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Ruminococcus
           sp. SR1/5]
          Length = 437

 Score = 40.0 bits (92), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 68/146 (46%), Gaps = 28/146 (19%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRT----LEEFT-GQVEACSNLKVFIEAAKAR---AE 52
           +M+ E  +  + +  +  I+LL+P      L+E+  GQ +A   L V +     R   + 
Sbjct: 45  IMEEEFSMYDHEADYETGINLLKPEEIHSILDEYVIGQDDAKKALSVAVYNHYKRILASR 104

Query: 53  ALD------HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--- 103
            LD      ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+   
Sbjct: 105 NLDVELQKSNILMLGPTGSGKTLLAQTLARLLNVPFAIADATTLTEAGYVGEDVENILLK 164

Query: 104 ----EDRD-------VLFIDEIHRLS 118
                D D       +++IDEI +++
Sbjct: 165 IIQAADYDIERAQYGIIYIDEIDKIT 190


>gi|293365855|ref|ZP_06612560.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           oralis ATCC 35037]
 gi|315613540|ref|ZP_07888447.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           sanguinis ATCC 49296]
 gi|331265985|ref|YP_004325615.1| ATP-dependent Clp protease ATP-binding subunit clpX [Streptococcus
           oralis Uo5]
 gi|291315679|gb|EFE56127.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           oralis ATCC 35037]
 gi|315314231|gb|EFU62276.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           sanguinis ATCC 49296]
 gi|326682657|emb|CBZ00274.1| ATP-dependent Clp protease ATP-binding subunit clpX [Streptococcus
           oralis Uo5]
          Length = 410

 Score = 40.0 bits (92), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +A+ L V F       + +AG    D+  +L  L        
Sbjct: 114 NILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNI 173

Query: 104 --EDRDVLFIDEIHRLS 118
              +R ++++DEI +++
Sbjct: 174 ERAERGIIYVDEIDKIA 190


>gi|237752785|ref|ZP_04583265.1| ATP-dependent protease ATP-binding subunit [Helicobacter
           winghamensis ATCC BAA-430]
 gi|229376274|gb|EEO26365.1| ATP-dependent protease ATP-binding subunit [Helicobacter
           winghamensis ATCC BAA-430]
          Length = 416

 Score = 40.0 bits (92), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 67/152 (44%), Gaps = 35/152 (23%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTL-----EEFTGQVEACSNLKVFIEAAKAR---AEA 53
           +DRE      V++E  D+ ++ P+ L     E   GQ +A     V +     R     A
Sbjct: 46  IDRE----EEVAKESDDLKIVSPKELKAVLDEYVIGQEKAKKVFSVAVYNHYKRVLQGAA 101

Query: 54  LD---------HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALL 100
           +D         ++L +GP G GKT +AQ +A+ L +         + +AG    D+  +L
Sbjct: 102 IDDDDTEITKSNILLIGPTGSGKTLMAQTLAKFLNIPIAICDATSLTEAGYVGEDVENIL 161

Query: 101 TNL----------EDRDVLFIDEIHRLSIIVE 122
           T L            + ++FIDEI ++S + E
Sbjct: 162 TRLLQEAGGDIQKAQKGIVFIDEIDKISRLSE 193


>gi|237751691|ref|ZP_04582171.1| ATP-dependent zinc metalloproteinase [Helicobacter bilis ATCC
           43879]
 gi|229373057|gb|EEO23448.1| ATP-dependent zinc metalloproteinase [Helicobacter bilis ATCC
           43879]
          Length = 584

 Score = 40.0 bits (92), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL VGPPG+GKT +A+ +A E GV F   SG 
Sbjct: 220 VLLVGPPGVGKTMIAKAIAGESGVPFFYHSGS 251


>gi|116785245|gb|ABK23650.1| unknown [Picea sitchensis]
 gi|224286688|gb|ACN41047.1| unknown [Picea sitchensis]
          Length = 339

 Score = 40.0 bits (92), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 6/63 (9%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN 81
          RP+ +++   Q E    L   +E        L H+LF GPPG GKTT A  +A +L G  
Sbjct: 16 RPKQVKDVAHQEEVVRALTNTLETGN-----LPHLLFYGPPGTGKTTTALAIAHQLFGPE 70

Query: 82 FRS 84
          ++S
Sbjct: 71 YKS 73


>gi|145492132|ref|XP_001432064.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124399173|emb|CAK64667.1| unnamed protein product [Paramecium tetraurelia]
          Length = 443

 Score = 40.0 bits (92), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 79/186 (42%), Gaps = 21/186 (11%)

Query: 43  FIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVNFRSTSGPVIAK-AGDLAALL 100
           F E A+   +    +L  GPPG GKT LA+  A E  G  F  +S  +I+K  G+   L+
Sbjct: 168 FFEGARTPWKG---ILMYGPPGTGKTYLAKACATEAEGTFFSVSSADLISKYVGESEKLI 224

Query: 101 TNL------EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV---GEGPSARSVKINL 151
             L      +   ++FIDEI  +     E    A      + +V   G G   + V    
Sbjct: 225 KTLFTMAREQKPSIIFIDEIDSMCGARGEGQNDASRRVITEFLVQMQGVGHDDKGV---- 280

Query: 152 SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEI 211
               ++ AT     L   ++ RF   I +   +++  + ++Q   K T   +T E   ++
Sbjct: 281 ---LVLGATNLPWALDTAIRRRFEKRIYIPLPDVQAREYMIQNSLKQTKTTLTKEQFEDL 337

Query: 212 AMRSRG 217
           A ++ G
Sbjct: 338 ASKTEG 343


>gi|119177229|ref|XP_001240416.1| hypothetical protein CIMG_07579 [Coccidioides immitis RS]
          Length = 1307

 Score = 40.0 bits (92), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 65/133 (48%), Gaps = 20/133 (15%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALD----HVLFVGPPGLGKTTLAQVVA- 75
           L+R + LEE   Q     ++K  ++  +++  +L+    +V+F G PG GKTT A++ A 
Sbjct: 169 LMRYQGLEEVKQQF---LDIKSKVDICESQGRSLNRERFNVVFQGNPGTGKTTFARLYAE 225

Query: 76  --RELGV----NFRSTSGPVIAKAGDLAALLTNLED-----RDVLFIDEIHRLSIIVEEI 124
               +GV     F+ T+G  +A  G   A    +ED       VLFIDE ++L+    E 
Sbjct: 226 FLHSVGVINSSYFKETAGIALAVKGAEGA-QDEVEDILNHNGGVLFIDEAYQLTAAYIEA 284

Query: 125 LYPAMEDFQLDLM 137
           L     DF L  M
Sbjct: 285 LGKQALDFLLKAM 297


>gi|71003365|ref|XP_756363.1| hypothetical protein UM00216.1 [Ustilago maydis 521]
 gi|46095800|gb|EAK81033.1| hypothetical protein UM00216.1 [Ustilago maydis 521]
          Length = 384

 Score = 40.0 bits (92), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+T++E   Q    + LK  +      +  L H+LF GPPG GKT+    +AR+L
Sbjct: 36 RPKTIDEVAAQEHTVAVLKKTL-----LSNNLPHMLFYGPPGTGKTSTILALARQL 86


>gi|326563260|gb|EGE13527.1| ATP-dependent protease ATP-binding subunit ClpX [Moraxella
           catarrhalis 46P47B1]
          Length = 438

 Score = 39.7 bits (91), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDV 108
           ++L +GP G GKT LAQ +A+ L V F       + +AG +   + N+        D DV
Sbjct: 139 NILLIGPTGSGKTLLAQTLAKMLDVPFAMADATTLTEAGYVGEDVENIVQKLLQASDYDV 198

Query: 109 -------LFIDEIHRLS 118
                  ++IDEI ++S
Sbjct: 199 QKAEQGIIYIDEIDKIS 215


>gi|305691182|gb|ADM65834.1| leaf rust resistance protein Lr10 [Triticum turgidum subsp.
           dicoccoides]
          Length = 810

 Score = 39.7 bits (91), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 29/44 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALL 100
           V  VG  GLGKTTLA+ V  EL +NF   +   I+++ D+AA+L
Sbjct: 193 VSIVGCAGLGKTTLAKQVYDELRINFEYRAFVSISRSPDMAAIL 236


>gi|297811665|ref|XP_002873716.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297319553|gb|EFH49975.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 685

 Score = 39.7 bits (91), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL  GPPG GKT LA+ +A E GV F S SG    +   G  A+ + +L +R       +
Sbjct: 259 VLLTGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMFVGVGASRVRDLFNRAKANSPCI 318

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 319 VFIDEI 324


>gi|297155325|gb|ADI05037.1| hypothetical protein SBI_01916 [Streptomyces bingchenggensis BCW-1]
          Length = 1103

 Score = 39.7 bits (91), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 79/201 (39%), Gaps = 41/201 (20%)

Query: 56  HVLFVGPPGLGKTTLAQVVAR---ELGV-----NFRSTSGPVIAKAGDLAALLT----NL 103
           H++F GPPG GKTT+A++      +LGV         +   ++A+     A+ T    N 
Sbjct: 601 HLVFAGPPGTGKTTVARLYGSILAQLGVLPSGHLVEVSRADLVAQVIGGTAIKTTEAFNE 660

Query: 104 EDRDVLFIDEIHRLSI----------IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSR 153
               VLFIDE + L+              + L   MED + D++V     A      ++ 
Sbjct: 661 AIGGVLFIDEAYTLTPEGGSSNDFGREAVDTLLKLMEDHREDVVV----IAAGYSAEMTS 716

Query: 154 FTLIAATTRVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQRGAKLT----GLAVTDEAA 208
           F          L++NP L  RF   I    Y + DL TI +          G   T+  A
Sbjct: 717 F----------LVSNPGLASRFTRTIEFTNYSVTDLVTITESMCASHQYELGPGTTEALA 766

Query: 209 CEIAMRSRGTPRIAGRLLRRV 229
                  RG     GR  RRV
Sbjct: 767 AHFEAMDRGASFGNGRAARRV 787



 Score = 37.4 bits (85), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 68/170 (40%), Gaps = 36/170 (21%)

Query: 56   HVLFVGPPGLGKTTLAQVVA---RELGVNFRST---------SGPVIAKAGDLAALLTNL 103
            H++F GPPG GKTT+A++ A     LGV  R            G  +     L   +   
Sbjct: 878  HLVFSGPPGTGKTTVARLYAGLLHSLGVLPRGQLVEVARADLVGRYVGHTAQLTKEVFES 937

Query: 104  EDRDVLFIDEIHRLSIIVE---------EILYPAMEDFQLDLMVGEGPSARSVKINLSRF 154
                VLFIDE + L+             + L   MED +  ++V            + RF
Sbjct: 938  AMGGVLFIDEAYTLTPEGNSSDFGREAVDTLLKLMEDHRDQVVV----IVAGYTAEMRRF 993

Query: 155  TLIAATTRVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAV 203
                      L +NP L  RF   +    Y  ++L TI++R A+ +G A 
Sbjct: 994  ----------LDSNPGLASRFSRFVEFENYTTDELLTILERHAEESGYAC 1033


>gi|289642581|ref|ZP_06474723.1| ATP-dependent metalloprotease FtsH [Frankia symbiont of Datisca
           glomerata]
 gi|289507576|gb|EFD28533.1| ATP-dependent metalloprotease FtsH [Frankia symbiont of Datisca
           glomerata]
          Length = 720

 Score = 39.7 bits (91), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 30/58 (51%), Gaps = 4/58 (6%)

Query: 34  VEACSNLKVFIEAAKA----RAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           +E    +K F+E         A+    VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 167 IEELQEIKEFLENPGKFQAMGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISG 224


>gi|237743261|ref|ZP_04573742.1| ATP-dependent protease ATP-binding subunit [Fusobacterium sp. 7_1]
 gi|229433040|gb|EEO43252.1| ATP-dependent protease ATP-binding subunit [Fusobacterium sp. 7_1]
          Length = 424

 Score = 39.7 bits (91), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 64/145 (44%), Gaps = 31/145 (21%)

Query: 4   REGLLSRNVSQEDADISLLRP----RTLEEFT-GQVEACSNLKVFIEAAKAR--AEALD- 55
           R+G  S N + +   I LL+P      L+E+  GQ EA   L V +     R      D 
Sbjct: 57  RDGKSSNNKNYK-GKIELLKPVEIKAKLDEYVVGQDEAKKVLSVAVYNHYKRILNNGQDD 115

Query: 56  --------HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL 103
                   +VL VGP G GKT LAQ +AR L V F       + +AG    D+  +L  L
Sbjct: 116 DGVELQKSNVLLVGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGDDVENVLVRL 175

Query: 104 ----------EDRDVLFIDEIHRLS 118
                      +R +++IDE  +++
Sbjct: 176 IQACNYDIPNAERGIIYIDEFDKIA 200


>gi|289207759|ref|YP_003459825.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Thioalkalivibrio sp. K90mix]
 gi|288943390|gb|ADC71089.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Thioalkalivibrio sp. K90mix]
          Length = 425

 Score = 39.7 bits (91), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 55/128 (42%), Gaps = 29/128 (22%)

Query: 20  SLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEA----------LDHVLFVGPPG 64
           SL +PR + E       GQ  A   L V +     R EA            +++ +GP G
Sbjct: 63  SLPKPREIREILDDYVIGQTSAKKILSVAVYNHYKRLEARAGKDDVELSKSNIMLIGPTG 122

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDV-------LF 110
            GKT LA+ +AR L V F       + +AG +   + N+        D DV       ++
Sbjct: 123 SGKTLLAETLARVLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAENGIVY 182

Query: 111 IDEIHRLS 118
           IDEI ++S
Sbjct: 183 IDEIDKVS 190


>gi|241957153|ref|XP_002421296.1| replication factor C subunit, putative [Candida dubliniensis
          CD36]
 gi|223644640|emb|CAX40630.1| replication factor C subunit, putative [Candida dubliniensis
          CD36]
          Length = 364

 Score = 39.7 bits (91), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP++L + + Q      +KV  +  K+    L H+LF GPPG GKT+    +A+EL
Sbjct: 32 RPKSLSDVSSQEHT---IKVLTQTIKSGN--LPHMLFYGPPGTGKTSTILALAKEL 82


>gi|213513822|ref|NP_001134786.1| replication factor C subunit 2 [Salmo salar]
 gi|209735998|gb|ACI68868.1| Replication factor C subunit 2 [Salmo salar]
          Length = 353

 Score = 39.7 bits (91), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP  L E  G  E  S L+VF     AR   + +++  GPPG GKTT    +AR L
Sbjct: 42 RPLKLNEIVGNEETVSRLEVF-----AREGNVPNIIIAGPPGTGKTTSILCLARAL 92


>gi|209882379|ref|XP_002142626.1| MIT domain-containing protein [Cryptosporidium muris RN66]
 gi|209558232|gb|EEA08277.1| MIT domain-containing protein [Cryptosporidium muris RN66]
          Length = 434

 Score = 39.7 bits (91), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 77/183 (42%), Gaps = 8/183 (4%)

Query: 43  FIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRS-TSGPVIAK-AGDLAALL 100
           F +  K   +    +L  GPPG GKT LA+  A EL   F + +S  + +K  G+   L+
Sbjct: 138 FPQLFKGNLKPWKGILLYGPPGTGKTYLAKACATELNGTFLTLSSADLTSKWQGESEKLI 197

Query: 101 TNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRF 154
            +L D        ++FIDE+  L     +    +    + + +V        +  N    
Sbjct: 198 KSLFDIAREKAPSIIFIDEVDSLCSSRNDQENESSRRIKTEFLVQMDGINSGILDNNKSI 257

Query: 155 TLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMR 214
            ++ AT     L   ++ RF   I +   +    K I+ +G K T   +TD+    I+ +
Sbjct: 258 LVLGATNVPWDLDIAIRRRFERRIYIPLPDYSARKQIILQGLKDTNHNLTDDDISYISEQ 317

Query: 215 SRG 217
           + G
Sbjct: 318 TNG 320


>gi|194208909|ref|XP_001488280.2| PREDICTED: similar to Paraplegin (Spastic paraplegia protein 7)
           [Equus caballus]
          Length = 765

 Score = 39.7 bits (91), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 20/134 (14%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRT-----LEEFTGQVEACSNLKVFIEAAKA------ 49
           M  REG  S     + A  +++  +T      ++  G  EA   +K F++  K+      
Sbjct: 249 MTGREGGFSAFNQLKMARFTIVDGKTGKGVSFKDVAGMHEAKLEVKEFVDYLKSPERFLQ 308

Query: 50  -RAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTN 102
             A+     L +GPPG GKT LA+ VA E  V F + +GP   +      A  + +L   
Sbjct: 309 LGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGPEFVEVIGGLGAARVRSLFKE 368

Query: 103 LEDRD--VLFIDEI 114
              R   +++IDEI
Sbjct: 369 ARSRAPCIVYIDEI 382


>gi|165934065|gb|ABY74559.1| katanin p60 ATPase-containing subunit A-like 1 (predicted)
           [Callithrix jacchus]
          Length = 322

 Score = 39.7 bits (91), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL VGPPG GKT LA+ VA E G  F + S   +
Sbjct: 76  VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTL 109


>gi|160887744|ref|ZP_02068747.1| hypothetical protein BACUNI_00146 [Bacteroides uniformis ATCC 8492]
 gi|270295690|ref|ZP_06201891.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|156862775|gb|EDO56206.1| hypothetical protein BACUNI_00146 [Bacteroides uniformis ATCC 8492]
 gi|270274937|gb|EFA20798.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 604

 Score = 39.7 bits (91), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 10/110 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP T E   GQ    + LK  I   K     L H  LF GP G+GKTT A++ A+ +   
Sbjct: 12  RPSTFESVVGQRALTTTLKNAIATGK-----LAHAYLFCGPRGVGKTTCARIFAKTINCM 66

Query: 82  FRSTSGPVIAKAGDLAAL----LTNLEDRDVLFIDEIHRLSIIVEEILYP 127
             +  G    +     A       N+ + D    + +  +  +VE++  P
Sbjct: 67  SPTADGEACNQCESCTAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIP 116


>gi|148673904|gb|EDL05851.1| katanin p60 subunit A-like 1, isoform CRA_a [Mus musculus]
          Length = 490

 Score = 39.7 bits (91), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL VGPPG GKT LA+ VA E G  F + S   +
Sbjct: 244 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTL 277


>gi|148977889|ref|ZP_01814442.1| ATP-dependent protease ATP-binding subunit [Vibrionales bacterium
           SWAT-3]
 gi|145962835|gb|EDK28107.1| ATP-dependent protease ATP-binding subunit [Vibrionales bacterium
           SWAT-3]
          Length = 426

 Score = 39.7 bits (91), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LA+ +AR L V F       + +AG +   + N+            
Sbjct: 116 NILLIGPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 175

Query: 104 --EDRDVLFIDEIHRLS 118
              +R +++IDEI ++S
Sbjct: 176 AKAERGIVYIDEIDKIS 192


>gi|154344573|ref|XP_001568228.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134065565|emb|CAM43335.1| conserved hypothetical protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 361

 Score = 39.7 bits (91), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGDL---AALLTNLEDR---DV 108
           VL  GPPG GKT LA+ +A+ELG +F + +   I     GD    AA +  L  +    V
Sbjct: 138 VLLYGPPGTGKTLLARALAKELGCSFINVNTESIFSKWVGDTERNAAAIFTLAAKISPCV 197

Query: 109 LFIDEIHRL 117
           +F+DEI  L
Sbjct: 198 IFVDEIDSL 206


>gi|51891498|ref|YP_074189.1| Lon-like ATP-dependent protease [Symbiobacterium thermophilum IAM
           14863]
 gi|51855187|dbj|BAD39345.1| Lon-like ATP-dependent protease [Symbiobacterium thermophilum IAM
           14863]
          Length = 579

 Score = 39.7 bits (91), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 5/66 (7%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP + +E  GQ E    L+  +     +     HV+  GPPG+GKT  A++V  E   N 
Sbjct: 64  RPASFDEIVGQEEGIRALRAALCGPNPQ-----HVIIYGPPGVGKTAAARLVLEEAKRNP 118

Query: 83  RSTSGP 88
            S  GP
Sbjct: 119 ASPFGP 124


>gi|161609274|ref|NP_888798.2| ATP-dependent protease ATP-binding subunit [Bordetella
           bronchiseptica RB50]
 gi|161610395|ref|NP_884266.2| ATP-dependent protease ATP-binding subunit [Bordetella
           parapertussis 12822]
 gi|46576487|sp|Q7W8X1|CLPX_BORPA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|46576495|sp|Q7WK82|CLPX_BORBR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
          Length = 434

 Score = 39.7 bits (91), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104
           +++ +GP G GKT LAQ +AR L V F       + +AG +          LL N     
Sbjct: 115 NIMLIGPTGSGKTLLAQTLARMLNVPFVMADATTLTEAGYVGEDVENIIQKLLQNCNYDV 174

Query: 105 ---DRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 175 EKAQRAIIYIDEIDKIS 191


>gi|28897692|ref|NP_797297.1| ATP-dependent protease ATP-binding subunit ClpX [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|153839647|ref|ZP_01992314.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           parahaemolyticus AQ3810]
 gi|260366280|ref|ZP_05778736.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           parahaemolyticus K5030]
 gi|260879438|ref|ZP_05891793.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           parahaemolyticus AN-5034]
 gi|260898291|ref|ZP_05906787.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           parahaemolyticus Peru-466]
 gi|31340005|sp|Q87R79|CLPX_VIBPA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|28805905|dbj|BAC59181.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|149746837|gb|EDM57825.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           parahaemolyticus AQ3810]
 gi|308088429|gb|EFO38124.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           parahaemolyticus Peru-466]
 gi|308093194|gb|EFO42889.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           parahaemolyticus AN-5034]
 gi|308114044|gb|EFO51584.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           parahaemolyticus K5030]
 gi|328473325|gb|EGF44173.1| ATP-dependent protease ATP-binding subunit ClpX [Vibrio
           parahaemolyticus 10329]
          Length = 426

 Score = 39.7 bits (91), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LA+ +AR L V F       + +AG +   + N+            
Sbjct: 116 NILLIGPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 175

Query: 104 --EDRDVLFIDEIHRLS 118
              +R +++IDEI ++S
Sbjct: 176 AKAERGIVYIDEIDKIS 192


>gi|85707625|ref|ZP_01038691.1| ATP-dependent protease ATP-binding subunit [Erythrobacter sp. NAP1]
 gi|85689159|gb|EAQ29162.1| ATP-dependent protease ATP-binding subunit [Erythrobacter sp. NAP1]
          Length = 420

 Score = 39.7 bits (91), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 52/118 (44%), Gaps = 25/118 (21%)

Query: 26  TLEEFT-GQVEACSNLKVFIEAAKARAE----------ALDHVLFVGPPGLGKTTLAQVV 74
           TL ++  GQ  A  NL V +     R +          A  ++L VGP G GKT LAQ +
Sbjct: 73  TLNDYVIGQNSAKRNLSVAVHNHYKRLKHSGKADGVELAKSNILLVGPTGTGKTLLAQTL 132

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTN-----LEDRD---------VLFIDEIHRLS 118
           AR   V F       + +AG +   + N     L+  D         +++IDEI +++
Sbjct: 133 ARTFDVPFTMADATTLTEAGYVGEDVENIILKLLQSSDYNVEKAQHGIVYIDEIDKIT 190


>gi|150392225|ref|YP_001322274.1| ATP-dependent metalloprotease FtsH [Alkaliphilus metalliredigens
           QYMF]
 gi|310943093|sp|A6TWP7|FTSH2_ALKMQ RecName: Full=ATP-dependent zinc metalloprotease FtsH 2
 gi|149952087|gb|ABR50615.1| ATP-dependent metalloprotease FtsH [Alkaliphilus metalliredigens
           QYMF]
          Length = 689

 Score = 39.7 bits (91), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 34  VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           V+   N K +IE     A     +L +GPPG GKT L + VA E GV F S SG
Sbjct: 181 VDFLKNPKKYIELG---ARIPKGILMIGPPGTGKTYLTKAVAGEAGVPFFSISG 231


>gi|332072416|gb|EGI82899.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae GA17570]
 gi|332072739|gb|EGI83220.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae GA17545]
          Length = 401

 Score = 39.7 bits (91), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +A+ L V F       + +AG    D+  +L  L        
Sbjct: 105 NILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQVADFNI 164

Query: 104 --EDRDVLFIDEIHRLS 118
              +R ++++DEI +++
Sbjct: 165 ERAERGIIYVDEIDKIA 181


>gi|328949928|ref|YP_004367263.1| ATP-dependent metalloprotease FtsH [Marinithermus hydrothermalis
           DSM 14884]
 gi|328450252|gb|AEB11153.1| ATP-dependent metalloprotease FtsH [Marinithermus hydrothermalis
           DSM 14884]
          Length = 621

 Score = 39.7 bits (91), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 22/36 (61%), Positives = 23/36 (63%)

Query: 51  AEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTS 86
           AE    VL VGPPG GKT LA+ VA E GV F S S
Sbjct: 195 AEIPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSVS 230


>gi|326577945|gb|EGE27809.1| ATP-dependent protease ATP-binding subunit ClpX [Moraxella
           catarrhalis O35E]
          Length = 438

 Score = 39.7 bits (91), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDV 108
           ++L +GP G GKT LAQ +A+ L V F       + +AG +   + N+        D DV
Sbjct: 139 NILLIGPTGSGKTLLAQTLAKMLDVPFAMADATTLTEAGYVGEDVENIVQKLLQASDYDV 198

Query: 109 -------LFIDEIHRLS 118
                  ++IDEI ++S
Sbjct: 199 QKAEKGIIYIDEIDKIS 215


>gi|323699863|ref|ZP_08111775.1| ATPase associated with various cellular activities AAA_5
           [Desulfovibrio sp. ND132]
 gi|323459795|gb|EGB15660.1| ATPase associated with various cellular activities AAA_5
           [Desulfovibrio desulfuricans ND132]
          Length = 362

 Score = 39.7 bits (91), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 75/193 (38%), Gaps = 26/193 (13%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHR 116
           +L  GP G GKT LA+ VA  LGV F   +   +    D  A L   ED+       +  
Sbjct: 107 ILLDGPQGSGKTVLARKVAESLGVRFIFFNCSAVYDPTDFLASLQPAEDQSKRTFTWVE- 165

Query: 117 LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
            + I+  +   A  + +  + + E    R     ++R  +++A      + NP+   F I
Sbjct: 166 -TDILRALTEAAESNERFLIFLDEFNRCRE----MARNGVMSALDATRKMFNPVNGEF-I 219

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAA---------------CEIAMRSRGTPRI 221
           PI  N   I      +  GA+ TG    D A                 E  + SR  P +
Sbjct: 220 PIPENVQWI----AAINNGAQFTGTTAVDPAQLDRFAPLKVDYPPPEAEARLLSRTYPDV 275

Query: 222 AGRLLRRVRDFAE 234
             R +RRV   AE
Sbjct: 276 PLREIRRVVKVAE 288


>gi|313680818|ref|YP_004058557.1| membrane protease ftsh catalytic subunit [Oceanithermus profundus
           DSM 14977]
 gi|313153533|gb|ADR37384.1| membrane protease FtsH catalytic subunit [Oceanithermus profundus
           DSM 14977]
          Length = 618

 Score = 39.7 bits (91), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 22/36 (61%), Positives = 23/36 (63%)

Query: 51  AEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTS 86
           AE    VL VGPPG GKT LA+ VA E GV F S S
Sbjct: 197 AEIPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSVS 232


>gi|307705961|ref|ZP_07642786.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           mitis SK564]
 gi|307620471|gb|EFN99582.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           mitis SK564]
          Length = 401

 Score = 39.7 bits (91), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +A+ L V F       + +AG    D+  +L  L        
Sbjct: 105 NILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNI 164

Query: 104 --EDRDVLFIDEIHRLS 118
              +R ++++DEI +++
Sbjct: 165 ERAERGIIYVDEIDKIA 181


>gi|260102341|ref|ZP_05752578.1| cell division protein FtsH [Lactobacillus helveticus DSM 20075]
 gi|260083850|gb|EEW67970.1| cell division protein FtsH [Lactobacillus helveticus DSM 20075]
          Length = 721

 Score = 39.7 bits (91), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 33/66 (50%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108
           VL  GPPG GKT LA+ VA E  V F S SG       V   A  +  L  N +     +
Sbjct: 229 VLLEGPPGTGKTLLARAVAGEANVPFYSISGSDFVEMFVGVGASRVRDLFNNAKKNAPSI 288

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 289 IFIDEI 294


>gi|255263549|ref|ZP_05342891.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thalassiobium
           sp. R2A62]
 gi|255105884|gb|EET48558.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thalassiobium
           sp. R2A62]
          Length = 422

 Score = 39.7 bits (91), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 17/98 (17%)

Query: 38  SNLKVFIEAAKARAE---ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG 94
           ++ K    AAK+  +   A  +++ VGP G GKT LAQ +AR L V F       + +AG
Sbjct: 93  NHYKRLNHAAKSGGDIELAKSNIMLVGPTGCGKTLLAQTLARILDVPFTMADATTLTEAG 152

Query: 95  DLAALLTNL--------------EDRDVLFIDEIHRLS 118
            +   + N+                R +++IDE+ +++
Sbjct: 153 YVGEDVENIILKLLQASEYNVERAQRGIVYIDEVDKIT 190


>gi|169402701|gb|ACA53509.1| katanin p60 ATPase-containing subunit A-like 1 (predicted)
           [Callicebus moloch]
          Length = 322

 Score = 39.7 bits (91), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL VGPPG GKT LA+ VA E G  F + S   +
Sbjct: 76  VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTL 109


>gi|164686639|ref|ZP_02210667.1| hypothetical protein CLOBAR_00232 [Clostridium bartlettii DSM
           16795]
 gi|164604368|gb|EDQ97833.1| hypothetical protein CLOBAR_00232 [Clostridium bartlettii DSM
           16795]
          Length = 672

 Score = 39.7 bits (91), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 3/60 (5%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           E+ +  V+   N K +IE     A     +L VGPPG GKT L++ VA E GV F + SG
Sbjct: 179 EDLSEVVDFLKNPKRYIELG---ARIPKGILMVGPPGTGKTYLSRAVAGEAGVPFFTISG 235


>gi|153835694|ref|ZP_01988361.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           harveyi HY01]
 gi|156973713|ref|YP_001444620.1| ATP-dependent protease ATP-binding subunit [Vibrio harveyi ATCC
           BAA-1116]
 gi|269961044|ref|ZP_06175413.1| ATP-dependent Clp protease ATP-binding subunit clpX [Vibrio harveyi
           1DA3]
 gi|166215218|sp|A7MV82|CLPX_VIBHB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|148867675|gb|EDL66951.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           harveyi HY01]
 gi|156525307|gb|ABU70393.1| hypothetical protein VIBHAR_01418 [Vibrio harveyi ATCC BAA-1116]
 gi|269834263|gb|EEZ88353.1| ATP-dependent Clp protease ATP-binding subunit clpX [Vibrio harveyi
           1DA3]
          Length = 426

 Score = 39.7 bits (91), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LA+ +AR L V F       + +AG +   + N+            
Sbjct: 116 NILLIGPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 175

Query: 104 --EDRDVLFIDEIHRLS 118
              +R +++IDEI ++S
Sbjct: 176 AKAERGIVYIDEIDKIS 192


>gi|111610207|gb|ABH11595.1| cell division protein [Lactobacillus helveticus CNRZ32]
 gi|328463466|gb|EGF35117.1| cell division protein [Lactobacillus helveticus MTCC 5463]
          Length = 721

 Score = 39.7 bits (91), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 33/66 (50%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108
           VL  GPPG GKT LA+ VA E  V F S SG       V   A  +  L  N +     +
Sbjct: 229 VLLEGPPGTGKTLLARAVAGEANVPFYSISGSDFVEMFVGVGASRVRDLFNNAKKNAPSI 288

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 289 IFIDEI 294


>gi|91228616|ref|ZP_01262534.1| ATP-dependent protease ATP-binding subunit [Vibrio alginolyticus
           12G01]
 gi|269965579|ref|ZP_06179693.1| ATP-dependent Clp protease ATP-binding subunit clpX [Vibrio
           alginolyticus 40B]
 gi|91187848|gb|EAS74162.1| ATP-dependent protease ATP-binding subunit [Vibrio alginolyticus
           12G01]
 gi|269829804|gb|EEZ84039.1| ATP-dependent Clp protease ATP-binding subunit clpX [Vibrio
           alginolyticus 40B]
          Length = 426

 Score = 39.7 bits (91), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LA+ +AR L V F       + +AG +   + N+            
Sbjct: 116 NILLIGPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 175

Query: 104 --EDRDVLFIDEIHRLS 118
              +R +++IDEI ++S
Sbjct: 176 AKAERGIVYIDEIDKIS 192


>gi|124088814|ref|XP_001347246.1| AAA+-type ATPase [Paramecium tetraurelia strain d4-2]
 gi|50057635|emb|CAH03620.1| AAA+-type ATPase, putative [Paramecium tetraurelia]
          Length = 526

 Score = 39.7 bits (91), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 23/161 (14%)

Query: 46  AAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA-------- 97
           A ++++  L ++LF G PG GKT  A+++A   G++F   SG  I K G+ A        
Sbjct: 276 AKQSQSTPLRNLLFHGQPGTGKTLFAKLLAYNSGLHFAIISGGDIEKLGEQAVPEIDKLF 335

Query: 98  ALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE---GPSARSVKINLSRF 154
           +   +     ++FIDE        E I Y      Q    +       SA S K     +
Sbjct: 336 SWCNSTPKGTLIFIDE-------AEAIFYKRSSSKQTSAALSTFLAQTSAVSKK-----Y 383

Query: 155 TLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           +LI AT     L   + DR    ++ ++   E    ++++G
Sbjct: 384 SLILATNLPNKLDEAILDRIDQIVKFDYLNEEQRVKLLKKG 424


>gi|73669574|ref|YP_305589.1| cell division cycle protein [Methanosarcina barkeri str. Fusaro]
 gi|72396736|gb|AAZ71009.1| cell division cycle protein [Methanosarcina barkeri str. Fusaro]
          Length = 763

 Score = 39.7 bits (91), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 32/71 (45%), Gaps = 8/71 (11%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARELG 79
           E+  G  EA   ++  IE      E  D         VL  GPPG GKT LA+ VA E  
Sbjct: 215 EDLGGLKEAIGKVREMIELPLNHPELFDRLGIDAPKGVLLHGPPGTGKTLLAKAVANESD 274

Query: 80  VNFRSTSGPVI 90
             F S +GP I
Sbjct: 275 AYFISINGPEI 285



 Score = 38.1 bits (87), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 20/83 (24%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR----- 106
           EA   VL  GPPG GKT LA+ +A E   NF      + AK  DL +      ++     
Sbjct: 520 EAPKGVLLYGPPGTGKTLLAKAIAHESDANF------ITAKGSDLLSKWYGESEKRIAEV 573

Query: 107 ---------DVLFIDEIHRLSII 120
                     ++F+DE+  L+ I
Sbjct: 574 FTRARQVAPSIIFLDELDSLAPI 596


>gi|56695905|ref|YP_166256.1| ATP-dependent protease ATP-binding subunit ClpX [Ruegeria pomeroyi
           DSS-3]
 gi|81350417|sp|Q5LUP9|CLPX_SILPO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|56677642|gb|AAV94308.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ruegeria
           pomeroyi DSS-3]
          Length = 424

 Score = 39.7 bits (91), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+         
Sbjct: 113 AKSNILLIGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASE 172

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDE+ +++
Sbjct: 173 YNVERAQRGIVYIDEVDKIT 192


>gi|32474395|ref|NP_867389.1| hypothetical protein RB6669 [Rhodopirellula baltica SH 1]
 gi|32444933|emb|CAD74935.1| conserved hypothetical protein [Rhodopirellula baltica SH 1]
          Length = 1784

 Score = 39.7 bits (91), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 25/41 (60%)

Query: 50   RAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
            R + +  +L + PPG GKTTL + +A  LG+ F   +GP I
Sbjct: 1296 RTDRMGLLLLISPPGYGKTTLMEYIASRLGLVFMKINGPAI 1336


>gi|15639499|ref|NP_218949.1| ATP-dependent protease ATP-binding subunit ClpX [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189025738|ref|YP_001933510.1| ATP-dependent protease ATP-binding subunit ClpX [Treponema pallidum
           subsp. pallidum SS14]
 gi|6225173|sp|O83521|CLPX_TREPA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238689324|sp|B2S3A2|CLPX_TREPS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|3322800|gb|AAC65496.1| ATP-dependent Clp protease subunit X (clpX) [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189018313|gb|ACD70931.1| ATP-dependent Clp protease subunit X [Treponema pallidum subsp.
           pallidum SS14]
 gi|291059885|gb|ADD72620.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Treponema
           pallidum subsp. pallidum str. Chicago]
          Length = 415

 Score = 39.7 bits (91), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTN------------- 102
           +VL +GP G GKT LA+ +++++ V F       + +AG +   + N             
Sbjct: 112 NVLLIGPTGSGKTLLAKTLSQKMKVPFAIADATTLTEAGYVGEDVENILLKLVQNANGDV 171

Query: 103 -LEDRDVLFIDEIHRLS 118
            L +R ++FIDEI ++S
Sbjct: 172 ALAERGIIFIDEIDKIS 188


>gi|326914238|ref|XP_003203433.1| PREDICTED: katanin p60 ATPase-containing subunit A-like 1-like
           [Meleagris gallopavo]
          Length = 462

 Score = 39.7 bits (91), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL VGPPG GKT LA+ VA E G  F + S   +
Sbjct: 216 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTL 249


>gi|326576474|gb|EGE26382.1| ATP-dependent protease ATP-binding subunit ClpX [Moraxella
           catarrhalis CO72]
          Length = 438

 Score = 39.7 bits (91), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDV 108
           ++L +GP G GKT LAQ +A+ L V F       + +AG +   + N+        D DV
Sbjct: 139 NILLIGPTGSGKTLLAQTLAKMLDVPFAMADATTLTEAGYVGEDVENIVQKLLQASDYDV 198

Query: 109 -------LFIDEIHRLS 118
                  ++IDEI ++S
Sbjct: 199 QKAEKGIIYIDEIDKIS 215


>gi|326565912|gb|EGE16073.1| ATP-dependent protease ATP-binding subunit ClpX [Moraxella
           catarrhalis 103P14B1]
 gi|326575438|gb|EGE25363.1| ATP-dependent protease ATP-binding subunit ClpX [Moraxella
           catarrhalis 101P30B1]
          Length = 438

 Score = 39.7 bits (91), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDV 108
           ++L +GP G GKT LAQ +A+ L V F       + +AG +   + N+        D DV
Sbjct: 139 NILLIGPTGSGKTLLAQTLAKMLDVPFAMADATTLTEAGYVGEDVENIVQKLLQASDYDV 198

Query: 109 -------LFIDEIHRLS 118
                  ++IDEI ++S
Sbjct: 199 QKAEKGIIYIDEIDKIS 215


>gi|319787635|ref|YP_004147110.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Pseudoxanthomonas suwonensis 11-1]
 gi|317466147|gb|ADV27879.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 429

 Score = 39.7 bits (91), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 57/133 (42%), Gaps = 29/133 (21%)

Query: 15  EDADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAE----------ALDHVLF 59
           + A  SL +PR + E       GQ  A   L V +     R E          A  ++L 
Sbjct: 60  QSARSSLPKPREILEVLDQYVIGQQRAKKTLAVAVYNHYKRIESRQRNEDVELAKSNILL 119

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDV---- 108
           VGP G GKT LA+ +AR L V F       + +AG +   + N+        D DV    
Sbjct: 120 VGPTGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQ 179

Query: 109 ---LFIDEIHRLS 118
              ++IDEI ++S
Sbjct: 180 QGIVYIDEIDKIS 192


>gi|325104588|ref|YP_004274242.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Pedobacter
           saltans DSM 12145]
 gi|324973436|gb|ADY52420.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Pedobacter
           saltans DSM 12145]
          Length = 413

 Score = 39.7 bits (91), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 66/143 (46%), Gaps = 29/143 (20%)

Query: 5   EGLLSRNVSQEDADISLLRP----RTLEEFT-GQVEACSNLKVFI---------EAAKAR 50
           E   SR      A ++LL+P    R L+++  GQ  A   L V +         +  K  
Sbjct: 45  EEFASRKNKNVQATLTLLKPLEIKRHLDQYVIGQDSAKKVLSVAVYNHYKRLNQKVGKDE 104

Query: 51  AE-ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-- 103
            E    +++ VG  G GKT LA+ +A+ L V F      V+ +AG    D+ ++LT L  
Sbjct: 105 VEIEKSNIMMVGETGTGKTLLAKTIAKILNVPFCICDATVLTEAGYVGEDVESILTRLLQ 164

Query: 104 --------EDRDVLFIDEIHRLS 118
                    +R +++IDE+ +++
Sbjct: 165 AADYDVAAAERGIVYIDEVDKVA 187


>gi|306829878|ref|ZP_07463065.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus mitis
           ATCC 6249]
 gi|304427889|gb|EFM30982.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus mitis
           ATCC 6249]
          Length = 410

 Score = 39.7 bits (91), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +A+ L V F       + +AG    D+  +L  L        
Sbjct: 114 NILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNI 173

Query: 104 --EDRDVLFIDEIHRLS 118
              +R ++++DEI +++
Sbjct: 174 ERAERGIIYVDEIDKIA 190


>gi|284928754|ref|YP_003421276.1| DNA polymerase III subunit gamma/tau [cyanobacterium UCYN-A]
 gi|284809213|gb|ADB94918.1| DNA polymerase III, subunit gamma/tau [cyanobacterium UCYN-A]
          Length = 726

 Score = 39.7 bits (91), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 8/80 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T +   GQ        V   +   R++ + H  LF GP G GKT+ A++ A+   +N
Sbjct: 12  RPQTFDGLVGQKSI-----VLTLSNAIRSQRISHAYLFTGPRGTGKTSTARIFAK--SIN 64

Query: 82  FRSTSGPVIAKAGDLAALLT 101
             ++  P I+  G+  A  T
Sbjct: 65  CLASDAPSISPCGNCEACQT 84


>gi|240118149|ref|ZP_04732211.1| ATP-dependent protease ATP-binding subunit ClpX [Neisseria
           gonorrhoeae PID1]
 gi|268603866|ref|ZP_06138033.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae
           PID1]
 gi|268587997|gb|EEZ52673.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae
           PID1]
          Length = 414

 Score = 39.7 bits (91), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---EDRDV 108
           ++L +GP G GKT LAQ +AR+L V F       + +AG    D+  ++T L    D DV
Sbjct: 114 NILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDV 173

Query: 109 -------LFIDEIHRLS 118
                  ++IDEI ++S
Sbjct: 174 EKARHGIVYIDEIDKIS 190


>gi|237712928|ref|ZP_04543409.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. D1]
 gi|262409631|ref|ZP_06086171.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. 2_1_22]
 gi|294647112|ref|ZP_06724716.1| DNA polymerase III, subunit gamma and tau [Bacteroides ovatus SD CC
           2a]
 gi|294807901|ref|ZP_06766682.1| DNA polymerase III, subunit gamma and tau [Bacteroides
           xylanisolvens SD CC 1b]
 gi|229447047|gb|EEO52838.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. D1]
 gi|262352484|gb|EEZ01584.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. 2_1_22]
 gi|292637529|gb|EFF55943.1| DNA polymerase III, subunit gamma and tau [Bacteroides ovatus SD CC
           2a]
 gi|294444899|gb|EFG13585.1| DNA polymerase III, subunit gamma and tau [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 621

 Score = 39.7 bits (91), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 71/316 (22%), Positives = 111/316 (35%), Gaps = 64/316 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP T E   GQ    + LK  I   K     L H  LF GP G+GKTT A++ A+ +   
Sbjct: 12  RPSTFESVVGQRALTTTLKNAIATQK-----LAHAYLFCGPRGVGKTTCARIFAKTINCM 66

Query: 82  FRSTSGPVIAKAGDLAAL----LTNLEDRDVLFIDEIHRLSIIVEEILYP---------- 127
             +  G    +     A       N+ + D    + +  +  +VE++  P          
Sbjct: 67  TPTADGEACNQCESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYI 126

Query: 128 -------AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                  +   F   L   E P   ++         I ATT    +   +  R  I    
Sbjct: 127 IDEVHMLSASAFNAFLKTLEEPPRHAI--------FILATTEKHKILPTILSRCQI-YDF 177

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA--EVAHA 238
           N   +ED    +   A   G+    EA   IAM++ G  R A  +  +V  F    + + 
Sbjct: 178 NRISVEDTVNHLSYVASKEGITAEPEALNVIAMKADGGMRDALSIFDQVVSFTGGNITYK 237

Query: 239 KTI-------------------TREIADAALLRLAIDKMGFDQLDLRYLTMIARNF---- 275
             I                     +++DA LL   I   GFD     ++T ++ +F    
Sbjct: 238 SVIDNLNVLDYEYYFRLTDCFLENKVSDALLLFNDILNKGFD--GSHFITGLSSHFRDLL 295

Query: 276 -GGGPVGIETISAGLS 290
            G  PV +  +  G S
Sbjct: 296 VGKDPVTLPLLEVGAS 311


>gi|225861402|ref|YP_002742911.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|225727587|gb|ACO23438.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae Taiwan19F-14]
          Length = 402

 Score = 39.7 bits (91), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +A+ L V F       + +AG    D+  +L  L        
Sbjct: 106 NILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNI 165

Query: 104 --EDRDVLFIDEIHRLS 118
              +R ++++DEI +++
Sbjct: 166 ERAERGIIYVDEIDKIA 182


>gi|223039935|ref|ZP_03610218.1| putative Cell division protease FtsH homolog [Campylobacter rectus
           RM3267]
 gi|222878803|gb|EEF13901.1| putative Cell division protease FtsH homolog [Campylobacter rectus
           RM3267]
          Length = 555

 Score = 39.7 bits (91), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG+GKT +A+ VA E GV F   SG
Sbjct: 192 VLMVGPPGVGKTLVAKAVAGEAGVPFFYQSG 222


>gi|218781695|ref|YP_002433013.1| ATPase AAA-2 domain protein [Desulfatibacillum alkenivorans AK-01]
 gi|218763079|gb|ACL05545.1| ATPase AAA-2 domain protein [Desulfatibacillum alkenivorans AK-01]
          Length = 593

 Score = 39.7 bits (91), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 26/114 (22%)

Query: 55  DHVLFVGPPGLGKTTLAQVVARELGVNF-------RSTSGPVIAKAGDLAALLTNLEDRD 107
           ++VL +GP G+GKT L +++A+++GV F        S +G V     DL   L    D D
Sbjct: 113 NNVLLLGPTGVGKTYLIKLIAKKIGVPFVKGDATKFSETGYVGGDVEDLVRDLVREADDD 172

Query: 108 V-------LFIDEIHRLSII------------VEEILYPAMEDFQLDLMVGEGP 142
           V       ++IDEI +++              V+  L   ME+ +++L V   P
Sbjct: 173 VELAQYGIIYIDEIDKIAAAHNMMGADVSRTGVQRALLKPMEETEVELKVPHDP 226


>gi|218779309|ref|YP_002430627.1| ATP-dependent protease ATP-binding subunit ClpX [Desulfatibacillum
           alkenivorans AK-01]
 gi|226706583|sp|B8FA63|CLPX_DESAA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|218760693|gb|ACL03159.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Desulfatibacillum alkenivorans AK-01]
          Length = 416

 Score = 39.7 bits (91), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104
           +VL +GP G GKT LAQ +AR L V F       + +AG +         +LL N +   
Sbjct: 112 NVLLIGPTGSGKTLLAQTLARFLDVPFTIADATALTEAGYVGEDVENIILSLLQNADYDV 171

Query: 105 ---DRDVLFIDEIHRLS 118
               R +++IDEI +++
Sbjct: 172 ERAKRGIVYIDEIDKIA 188


>gi|209879988|ref|XP_002141434.1| chaperone clpB family protein [Cryptosporidium muris RN66]
 gi|209557040|gb|EEA07085.1| chaperone clpB family protein [Cryptosporidium muris RN66]
          Length = 1270

 Score = 39.7 bits (91), Expect = 0.58,   Method: Composition-based stats.
 Identities = 30/101 (29%), Positives = 42/101 (41%), Gaps = 28/101 (27%)

Query: 39  NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-------------------- 78
           N    IE   +R E    V+ +GPPG GKTTLA+ +A+ +                    
Sbjct: 459 NEMALIERVLSR-EGKSSVMLIGPPGTGKTTLAEALAQRIIDGTVTSFLLGYKVFSVDIS 517

Query: 79  ----GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIH 115
               G  FR   G   AK  D+  L+     + +LF DE+H
Sbjct: 518 NILSGSTFR---GEFEAKLHDILKLVNGHNQKVILFFDEMH 555


>gi|159484076|ref|XP_001700086.1| DNA replication factor C complex subunit 2 [Chlamydomonas
          reinhardtii]
 gi|158272582|gb|EDO98380.1| DNA replication factor C complex subunit 2 [Chlamydomonas
          reinhardtii]
          Length = 340

 Score = 39.7 bits (91), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 6/62 (9%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE-LGVN 81
          RP+ + E  G  EA + L+V  E        + +V+  GPPG GKTT    +A + LG N
Sbjct: 30 RPQFINEIVGNTEAVARLQVIAEEGN-----MPNVILSGPPGTGKTTSILCLAHQLLGPN 84

Query: 82 FR 83
          ++
Sbjct: 85 YK 86


>gi|163851840|ref|YP_001639883.1| ATP-dependent protease ATP-binding subunit [Methylobacterium
           extorquens PA1]
 gi|218530632|ref|YP_002421448.1| ATP-dependent protease ATP-binding subunit ClpX [Methylobacterium
           chloromethanicum CM4]
 gi|240139004|ref|YP_002963479.1| ATP-dependent Clp protease ATP-binding subunit clpX
           [Methylobacterium extorquens AM1]
 gi|254561599|ref|YP_003068694.1| ATP-dependent Clp protease ATP-binding subunit clpX
           [Methylobacterium extorquens DM4]
 gi|238687353|sp|A9W5F6|CLPX_METEP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|254763853|sp|B7KNT1|CLPX_METC4 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|163663445|gb|ABY30812.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Methylobacterium extorquens PA1]
 gi|218522935|gb|ACK83520.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Methylobacterium chloromethanicum CM4]
 gi|240008976|gb|ACS40202.1| ATP-dependent Clp protease ATP-binding subunit clpX
           [Methylobacterium extorquens AM1]
 gi|254268877|emb|CAX24838.1| ATP-dependent Clp protease ATP-binding subunit clpX
           [Methylobacterium extorquens DM4]
          Length = 423

 Score = 39.7 bits (91), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  +++ +GP G GKT LAQ +AR L V F       + +AG +   + N+         
Sbjct: 110 AKSNIMLIGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASD 169

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDEI ++S
Sbjct: 170 YNVERAQRGIVYIDEIDKIS 189


>gi|126664260|ref|ZP_01735252.1| putative DNA polymerase III [Flavobacteria bacterium BAL38]
 gi|126623792|gb|EAZ94488.1| putative DNA polymerase III [Flavobacteria bacterium BAL38]
          Length = 357

 Score = 39.7 bits (91), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 96/248 (38%), Gaps = 61/248 (24%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG--- 79
           RP+T ++  GQ    + L   IE     A+AL   LF GP G+GKTT A+++AR++    
Sbjct: 12  RPQTFKDVVGQQAITNTLLNAIETNHL-AQAL---LFTGPRGVGKTTCARILARKINQEG 67

Query: 80  -------VNFRSTSGPVIAKAG--DLAALLTNLE------DRDVLFIDEIHRLSIIVEEI 124
                   +F        +  G  D+ +++  +          V  IDE+H LS      
Sbjct: 68  YDDPYEDFSFNVFELDAASNNGVDDIRSIIDQVRIPPQTGKYKVYIIDEVHMLS------ 121

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
                  F   L   E P   ++         I ATT    +         IP  L+  +
Sbjct: 122 ----TSAFNAFLKTLEEPPKHAI--------FILATTEKHKI---------IPTILSRCQ 160

Query: 185 IEDLKTIVQRGAKL--------TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
           I D K I  + AK          G+   D+A   IA ++ G  R A  +  RV  +    
Sbjct: 161 IFDFKRITIKDAKNHLAEIANEQGVTFEDDALHIIAQKADGAMRDALSIFDRVVSYC--- 217

Query: 237 HAKTITRE 244
             K +TR+
Sbjct: 218 -GKNLTRQ 224


>gi|19113502|ref|NP_596710.1| ribosome biogenesis factor recycling AAA family ATPase
           [Schizosaccharomyces pombe 972h-]
 gi|74676032|sp|O60058|AFG2_SCHPO RecName: Full=ATPase family gene 2 protein
 gi|3116137|emb|CAA18886.1| ribosome biogenesis factor recycling AAA family ATPase
           [Schizosaccharomyces pombe]
          Length = 809

 Score = 39.7 bits (91), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 8/65 (12%)

Query: 32  GQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARELGVNFR 83
           GQ E    LK  +E      E            VL  GPPG  KT  A+ +A E G+NF 
Sbjct: 552 GQEEVKQKLKESVEWPLTHGETFSRLGVRPPKGVLLYGPPGCSKTITAKAIATETGLNFI 611

Query: 84  STSGP 88
           +  GP
Sbjct: 612 AVKGP 616


>gi|53804996|ref|YP_113346.1| cell division protein FtsH [Methylococcus capsulatus str. Bath]
 gi|81682587|sp|Q60AK1|FTSH_METCA RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|53758757|gb|AAU93048.1| cell division protein FtsH [Methylococcus capsulatus str. Bath]
          Length = 637

 Score = 39.7 bits (91), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F + SG
Sbjct: 227 VLLVGPPGTGKTLLARAVAGEAGVPFFNISG 257


>gi|327541325|gb|EGF27867.1| protein containing ATPase, AAA+ type, core domain [Rhodopirellula
            baltica WH47]
          Length = 1784

 Score = 39.7 bits (91), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 25/41 (60%)

Query: 50   RAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
            R + +  +L + PPG GKTTL + +A  LG+ F   +GP I
Sbjct: 1296 RTDRMGLLLLISPPGYGKTTLMEYIASRLGLVFMKINGPAI 1336


>gi|324507237|gb|ADY43072.1| Peroxisome assembly factor 2 [Ascaris suum]
          Length = 753

 Score = 39.7 bits (91), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 17/32 (53%), Positives = 19/32 (59%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           V+  GPPG GKT  A+ VA E  V F S  GP
Sbjct: 516 VILYGPPGCGKTLTAKAVANEFKVTFLSVKGP 547


>gi|320169797|gb|EFW46696.1| replication factor C subunit 4 [Capsaspora owczarzaki ATCC 30864]
          Length = 347

 Score = 39.7 bits (91), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RPRT++E   Q E  + LK  + +         H+LF GPPG GKT+    +AR++
Sbjct: 30 RPRTVDEVAFQDEVVAVLKKSLTS-----NDFPHLLFYGPPGTGKTSTILAIARQM 80


>gi|313679507|ref|YP_004057246.1| ATP-dependent proteinase [Oceanithermus profundus DSM 14977]
 gi|313152222|gb|ADR36073.1| ATP-dependent proteinase [Oceanithermus profundus DSM 14977]
          Length = 808

 Score = 39.7 bits (91), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 54/226 (23%), Positives = 86/226 (38%), Gaps = 49/226 (21%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD----------------LAALL 100
           +LFVGPPG+GKT++A+ +AR LG  +   S   +    D                +  L 
Sbjct: 359 LLFVGPPGVGKTSIAKSIARALGRKYVRVSLGGVRDESDIRGHRRTYIGAMPGRIIQGLR 418

Query: 101 TNLEDRDVLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLS 152
                  V  +DE+ ++    +        E+L PA      D  +G       V  +LS
Sbjct: 419 QAGSKNPVFLLDEVDKMGQSFQGDPAAALLEVLDPAQNKEFTDHYLG-------VPFDLS 471

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL----KTIVQRGAKLTGLAVTDEAA 208
               I       L+  PL DR  +    ++ E E L    + ++ R  +  GL+      
Sbjct: 472 EVLFIGTANFPQLIPAPLMDRMELIEFTSYIEQEKLEIARRFLLPRQLEENGLSKGQVHI 531

Query: 209 CEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            E A            L+R +  +   A  + + REI   +LLR A
Sbjct: 532 TEAA------------LMRLITHYTREAGVRNLEREI--GSLLRKA 563


>gi|312385829|gb|EFR30234.1| hypothetical protein AND_00302 [Anopheles darlingi]
          Length = 833

 Score = 39.7 bits (91), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           +L  GPPG GKT +A+ VA E  ++F S  GP +     G     +  + DR       V
Sbjct: 588 ILLYGPPGTGKTLIAKAVATECNLSFLSVQGPELLNMYVGQSEQNVREVFDRARTASPCV 647

Query: 109 LFIDEIHRLS 118
           LF+DE+  L+
Sbjct: 648 LFLDELDSLA 657


>gi|308126598|ref|ZP_05911209.2| ClpX C4-type zinc finger domain protein [Vibrio parahaemolyticus
           AQ4037]
 gi|308108657|gb|EFO46197.1| ClpX C4-type zinc finger domain protein [Vibrio parahaemolyticus
           AQ4037]
          Length = 414

 Score = 39.7 bits (91), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LA+ +AR L V F       + +AG +   + N+            
Sbjct: 104 NILLIGPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 163

Query: 104 --EDRDVLFIDEIHRLS 118
              +R +++IDEI ++S
Sbjct: 164 AKAERGIVYIDEIDKIS 180


>gi|308177633|ref|YP_003917039.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Arthrobacter
           arilaitensis Re117]
 gi|307745096|emb|CBT76068.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Arthrobacter
           arilaitensis Re117]
          Length = 430

 Score = 39.7 bits (91), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---EDRDV 108
           +++ +GP G GKT LAQ +A++L V F       + +AG    D+  +L  L    D DV
Sbjct: 123 NIMLIGPTGCGKTYLAQSLAKKLNVPFAVADATSLTEAGYVGEDVENILLKLLQAADYDV 182

Query: 109 -------LFIDEIHRLS 118
                  ++IDEI ++S
Sbjct: 183 KKAETGIIYIDEIDKIS 199


>gi|294678130|ref|YP_003578745.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Rhodobacter
           capsulatus SB 1003]
 gi|294476950|gb|ADE86338.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhodobacter
           capsulatus SB 1003]
          Length = 424

 Score = 39.7 bits (91), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+         
Sbjct: 109 AKSNILLIGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASE 168

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDE+ +++
Sbjct: 169 YNVERAQRGIVYIDEVDKIT 188


>gi|312196285|ref|YP_004016346.1| ATP-dependent metalloprotease FtsH [Frankia sp. EuI1c]
 gi|311227621|gb|ADP80476.1| ATP-dependent metalloprotease FtsH [Frankia sp. EuI1c]
          Length = 654

 Score = 39.7 bits (91), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 38/76 (50%), Gaps = 8/76 (10%)

Query: 47  AKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALL 100
           A+A A+    VL VGPPG GKT LA+ VA E  V F S +G       V   A  +  L 
Sbjct: 214 ARAGAKGPRGVLMVGPPGTGKTLLARAVAGEAEVPFLSVTGSSFVEMFVGVGASRVRDLF 273

Query: 101 TNLEDR--DVLFIDEI 114
                R   ++FIDEI
Sbjct: 274 AEARKRAPSIIFIDEI 289


>gi|223994525|ref|XP_002286946.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220978261|gb|EED96587.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 344

 Score = 39.7 bits (91), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 37/74 (50%), Gaps = 8/74 (10%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNF-----RSTSGPVIAKAGDLAALLTNLEDR 106
           EA+  VL  GPPG GKT LA+ VA E G +F      S     + ++   A  +  L  R
Sbjct: 77  EAVKGVLLYGPPGTGKTMLAKAVATEGGASFLSVDASSVENKWLGESEKNAKAVFTLARR 136

Query: 107 ---DVLFIDEIHRL 117
               V+FIDE+  L
Sbjct: 137 LAPCVIFIDEVDSL 150


>gi|195152623|ref|XP_002017236.1| GL22198 [Drosophila persimilis]
 gi|198453938|ref|XP_001359405.2| GA10173 [Drosophila pseudoobscura pseudoobscura]
 gi|194112293|gb|EDW34336.1| GL22198 [Drosophila persimilis]
 gi|198132580|gb|EAL28551.2| GA10173 [Drosophila pseudoobscura pseudoobscura]
          Length = 582

 Score = 39.7 bits (91), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108
           VL VGPPG GKT LA+ VA E G  F + S   +     G+   +      +        
Sbjct: 339 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSATLTSKYRGESEKMVRLLFEMARFYAPST 398

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 399 IFIDEIDSL 407


>gi|183603154|ref|ZP_02712907.2| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae SP195]
 gi|183572734|gb|EDT93262.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae SP195]
          Length = 402

 Score = 39.7 bits (91), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +A+ L V F       + +AG    D+  +L  L        
Sbjct: 106 NILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQVADFNI 165

Query: 104 --EDRDVLFIDEIHRLS 118
              +R ++++DEI +++
Sbjct: 166 ERAERGIIYVDEIDKIA 182


>gi|170751515|ref|YP_001757775.1| ATP-dependent protease ATP-binding subunit ClpX [Methylobacterium
           radiotolerans JCM 2831]
 gi|238688765|sp|B1LW29|CLPX_METRJ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|170658037|gb|ACB27092.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Methylobacterium radiotolerans JCM 2831]
          Length = 423

 Score = 39.7 bits (91), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  +++ +GP G GKT LAQ +AR L V F       + +AG +   + N+         
Sbjct: 110 AKSNIMLIGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASD 169

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDEI ++S
Sbjct: 170 YNVERAQRGIVYIDEIDKIS 189


>gi|168049025|ref|XP_001776965.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671666|gb|EDQ58214.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 530

 Score = 39.7 bits (91), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLED------RDV 108
           VL  GPPG GKT LA+ VA E G  F + S   +A    G+   ++  L D         
Sbjct: 285 VLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRVLFDLARAYAPST 344

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 345 IFIDEIDSL 353


>gi|154151216|ref|YP_001404834.1| replication factor C small subunit [Candidatus Methanoregula
          boonei 6A8]
 gi|166225154|sp|A7I8Y0|RFCS_METB6 RecName: Full=Replication factor C small subunit; Short=RFC small
          subunit; AltName: Full=Clamp loader small subunit
 gi|153999768|gb|ABS56191.1| Replication factor C [Methanoregula boonei 6A8]
          Length = 322

 Score = 39.7 bits (91), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 10/70 (14%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          I   RP  L +  GQ +    L  ++++       L H+LF G  G+GKTT A  +ARE 
Sbjct: 9  IEKYRPAKLADIVGQDDIVERLSSYVKSGN-----LPHLLFTGSAGVGKTTAAVTLAREF 63

Query: 79 -----GVNFR 83
                +NFR
Sbjct: 64 FGDSWQMNFR 73


>gi|119177342|ref|XP_001240460.1| hypothetical protein CIMG_07623 [Coccidioides immitis RS]
 gi|303316031|ref|XP_003068020.1| Activator 1 41 kDa subunit , putative [Coccidioides posadasii
          C735 delta SOWgp]
 gi|240107696|gb|EER25875.1| Activator 1 41 kDa subunit , putative [Coccidioides posadasii
          C735 delta SOWgp]
          Length = 393

 Score = 39.7 bits (91), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+TL++   Q    + L+  ++A+      L H+LF GPPG GKT+    +A+ L
Sbjct: 43 RPKTLDDVAAQDHTVTVLQRTLQASN-----LPHMLFYGPPGTGKTSTILALAKSL 93


>gi|86148884|ref|ZP_01067135.1| ATP-dependent protease ATP-binding subunit [Vibrio sp. MED222]
 gi|218710173|ref|YP_002417794.1| ATP-dependent protease ATP-binding subunit ClpX [Vibrio splendidus
           LGP32]
 gi|254763873|sp|B7VHZ9|CLPX_VIBSL RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|85833327|gb|EAQ51534.1| ATP-dependent protease ATP-binding subunit [Vibrio sp. MED222]
 gi|218323192|emb|CAV19369.1| ATP-dependent Clp protease ATP-binding subunit clpX [Vibrio
           splendidus LGP32]
          Length = 426

 Score = 39.7 bits (91), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LA+ +AR L V F       + +AG +   + N+            
Sbjct: 116 NILLIGPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 175

Query: 104 --EDRDVLFIDEIHRLS 118
              +R +++IDEI ++S
Sbjct: 176 AKAERGIVYIDEIDKIS 192


>gi|84387736|ref|ZP_00990752.1| ATP-dependent protease ATP-binding subunit [Vibrio splendidus
           12B01]
 gi|84377419|gb|EAP94286.1| ATP-dependent protease ATP-binding subunit [Vibrio splendidus
           12B01]
          Length = 426

 Score = 39.7 bits (91), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LA+ +AR L V F       + +AG +   + N+            
Sbjct: 116 NILLIGPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 175

Query: 104 --EDRDVLFIDEIHRLS 118
              +R +++IDEI ++S
Sbjct: 176 AKAERGIVYIDEIDKIS 192


>gi|325295581|ref|YP_004282095.1| ATP-dependent protease La [Desulfurobacterium thermolithotrophum
           DSM 11699]
 gi|325066029|gb|ADY74036.1| ATP-dependent protease La [Desulfurobacterium thermolithotrophum
           DSM 11699]
          Length = 803

 Score = 39.7 bits (91), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 16/26 (61%), Positives = 21/26 (80%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF 82
           + FVGPPG+GKT+LA+ +AR LG  F
Sbjct: 369 ICFVGPPGVGKTSLARSIARALGRKF 394


>gi|323452125|gb|EGB08000.1| hypothetical protein AURANDRAFT_26972 [Aureococcus anophagefferens]
          Length = 159

 Score = 39.7 bits (91), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 8/76 (10%)

Query: 51  AEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLE 104
           A+    V+  GPPG GKT LA+ VA E GV F STSG       V   A  + ++  + +
Sbjct: 51  AQCPRGVILEGPPGTGKTLLARAVAGEAGVPFISTSGSEFVEMFVGVGASRIRSMFGDAK 110

Query: 105 DRD--VLFIDEIHRLS 118
                ++FIDEI  + 
Sbjct: 111 KNAPCIIFIDEIDAIG 126


>gi|323495055|ref|ZP_08100144.1| ATP-dependent protease ATP-binding subunit ClpX [Vibrio
           brasiliensis LMG 20546]
 gi|323310712|gb|EGA63887.1| ATP-dependent protease ATP-binding subunit ClpX [Vibrio
           brasiliensis LMG 20546]
          Length = 427

 Score = 39.7 bits (91), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LA+ +AR L V F       + +AG +   + N+            
Sbjct: 116 NILLIGPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 175

Query: 104 --EDRDVLFIDEIHRLS 118
              +R +++IDEI ++S
Sbjct: 176 AKAERGIVYIDEIDKIS 192


>gi|322377849|ref|ZP_08052338.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           sp. M334]
 gi|321281272|gb|EFX58283.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           sp. M334]
          Length = 410

 Score = 39.7 bits (91), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +A+ L V F       + +AG    D+  +L  L        
Sbjct: 114 NILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNI 173

Query: 104 --EDRDVLFIDEIHRLS 118
              +R ++++DEI +++
Sbjct: 174 ERTERGIIYVDEIDKIA 190


>gi|320032378|gb|EFW14331.1| DNA replication factor C subunit Rfc2 [Coccidioides posadasii
          str. Silveira]
          Length = 393

 Score = 39.7 bits (91), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+TL++   Q    + L+  ++A+      L H+LF GPPG GKT+    +A+ L
Sbjct: 43 RPKTLDDVAAQDHTVTVLQRTLQASN-----LPHMLFYGPPGTGKTSTILALAKSL 93


>gi|307703276|ref|ZP_07640221.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           oralis ATCC 35037]
 gi|307623142|gb|EFO02134.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           oralis ATCC 35037]
          Length = 401

 Score = 39.7 bits (91), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +A+ L V F       + +AG    D+  +L  L        
Sbjct: 105 NILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNI 164

Query: 104 --EDRDVLFIDEIHRLS 118
              +R ++++DEI +++
Sbjct: 165 ERAERGIIYVDEIDKIA 181


>gi|306824842|ref|ZP_07458186.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus sp.
           oral taxon 071 str. 73H25AP]
 gi|304433053|gb|EFM36025.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus sp.
           oral taxon 071 str. 73H25AP]
          Length = 410

 Score = 39.7 bits (91), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +A+ L V F       + +AG    D+  +L  L        
Sbjct: 114 NILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNI 173

Query: 104 --EDRDVLFIDEIHRLS 118
              +R ++++DEI +++
Sbjct: 174 ERAERGIIYVDEIDKIA 190


>gi|302671435|ref|YP_003831395.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Butyrivibrio
           proteoclasticus B316]
 gi|302395908|gb|ADL34813.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Butyrivibrio
           proteoclasticus B316]
          Length = 741

 Score = 39.7 bits (91), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 4/68 (5%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKA----RAEALDHVLFVGPPGLGKTTLAQ 72
           A +  L  R      GQ EA S +   ++ +KA      + L  +LFVGP G+GKT +A+
Sbjct: 440 AGLETLEERIKTRIFGQDEAVSQVVNAVKFSKAGLIEDGKPLASLLFVGPTGVGKTEIAR 499

Query: 73  VVARELGV 80
            +A ELGV
Sbjct: 500 TLADELGV 507


>gi|301769913|ref|XP_002920373.1| PREDICTED: spermatogenesis-associated protein 5-like [Ailuropoda
           melanoleuca]
          Length = 894

 Score = 39.7 bits (91), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTN------LEDRDV 108
           VL  GPPG GKT +A+ VA E+G      +GP +I+K  G+  A L        L    +
Sbjct: 391 VLLYGPPGTGKTMIARAVANEVGAYVSVINGPEIISKFYGETEARLRQIFAEAALRHPSI 450

Query: 109 LFIDEIHRLS 118
           +FIDE+  L 
Sbjct: 451 IFIDELDALC 460



 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 16/32 (50%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG  KT +A+ +A E G+NF +  GP
Sbjct: 665 VLLYGPPGCSKTMIAKALANESGLNFLAIKGP 696


>gi|302035646|ref|YP_003795968.1| ATP-dependent Clp protease ATP-binding subunit clpX [Candidatus
           Nitrospira defluvii]
 gi|300603710|emb|CBK40041.1| ATP-dependent Clp protease, ATP-binding subunit clpX [Candidatus
           Nitrospira defluvii]
          Length = 418

 Score = 39.7 bits (91), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 59/141 (41%), Gaps = 31/141 (21%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LAQ +A+ L V F       + +AG +   + N+            
Sbjct: 112 NILVIGPTGTGKTLLAQTLAKFLDVPFTLADATTLTEAGYVGEDVENIILKLLQAADYDV 171

Query: 104 --EDRDVLFIDEIHRLS------IIVEEILYPAMEDFQLDLMVG-----------EGPSA 144
              +R +++IDEI ++S       I  ++    ++   L L+ G           + P  
Sbjct: 172 ERAERGIVYIDEIDKISRKSDSPSITRDVSGEGVQQALLKLIEGTVANVPPQGGRKHPHQ 231

Query: 145 RSVKINLSRFTLIAATTRVGL 165
             +++N S    I     VGL
Sbjct: 232 EFIQVNTSNILFICGGAFVGL 252


>gi|298482983|ref|ZP_07001165.1| DNA polymerase III, gamma and tau subunits [Bacteroides sp. D22]
 gi|298270955|gb|EFI12534.1| DNA polymerase III, gamma and tau subunits [Bacteroides sp. D22]
          Length = 621

 Score = 39.7 bits (91), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 71/316 (22%), Positives = 111/316 (35%), Gaps = 64/316 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP T E   GQ    + LK  I   K     L H  LF GP G+GKTT A++ A+ +   
Sbjct: 12  RPSTFESVVGQRALTTTLKNAIATQK-----LAHAYLFCGPRGVGKTTCARIFAKTINCM 66

Query: 82  FRSTSGPVIAKAGDLAAL----LTNLEDRDVLFIDEIHRLSIIVEEILYP---------- 127
             +  G    +     A       N+ + D    + +  +  +VE++  P          
Sbjct: 67  TPTADGEACNQCESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYI 126

Query: 128 -------AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                  +   F   L   E P   ++         I ATT    +   +  R  I    
Sbjct: 127 IDEVHMLSASAFNAFLKTLEEPPRHAI--------FILATTEKHKILPTILSRCQI-YDF 177

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA--EVAHA 238
           N   +ED    +   A   G+    EA   IAM++ G  R A  +  +V  F    + + 
Sbjct: 178 NRISVEDTVNHLSYVASKEGITAEPEALNVIAMKADGGMRDALSIFDQVVSFTGGNITYK 237

Query: 239 KTI-------------------TREIADAALLRLAIDKMGFDQLDLRYLTMIARNF---- 275
             I                     +++DA LL   I   GFD     ++T ++ +F    
Sbjct: 238 SVIDNLNVLDYEYYFRLTDCFLENKVSDALLLFNDILNKGFD--GSHFITGLSSHFRDLL 295

Query: 276 -GGGPVGIETISAGLS 290
            G  PV +  +  G S
Sbjct: 296 VGKDPVTLPLLEVGAS 311


>gi|296232627|ref|XP_002761659.1| PREDICTED: lon protease homolog, mitochondrial isoform 2
           [Callithrix jacchus]
          Length = 924

 Score = 39.7 bits (91), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 87/207 (42%), Gaps = 33/207 (15%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLA 71
           S E+ D++  +    E+  G  +    +  FI  ++ R      +L F GPPG+GKT++A
Sbjct: 438 SDENLDLARAQAVLEEDHYGMEDVKKRILEFIAVSQLRGSTQGKILCFYGPPGVGKTSIA 497

Query: 72  QVVARELGVN-FRSTSGP--------------VIAKAGDLAALLTNLEDRD-VLFIDEIH 115
           + +AR L    FR + G               V A  G +   L   +  + ++ IDE+ 
Sbjct: 498 RSIARALNREYFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLILIDEVD 557

Query: 116 RL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           ++        S  + E+L P      LD  +        V ++LS+   I        + 
Sbjct: 558 KIGRGYQGDPSSALLELLDPEQNANFLDHYL-------DVPVDLSKVLFICTANVTDTIP 610

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQR 194
            PL+DR  + I ++ Y  ++   I +R
Sbjct: 611 EPLRDRMEV-ISVSGYVAQEKLAIAER 636


>gi|301758022|ref|XP_002914857.1| PREDICTED: replication factor C subunit 4-like [Ailuropoda
          melanoleuca]
 gi|281350719|gb|EFB26303.1| hypothetical protein PANDA_002794 [Ailuropoda melanoleuca]
          Length = 363

 Score = 39.7 bits (91), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+ ++E   Q E  + LK  +E A      L ++LF GPPG GKT+     AREL
Sbjct: 44 RPKCVDEIAFQEEVVAVLKKSLEGAD-----LPNLLFYGPPGTGKTSTILAAAREL 94


>gi|270006246|gb|EFA02694.1| hypothetical protein TcasGA2_TC008415 [Tribolium castaneum]
          Length = 758

 Score = 39.7 bits (91), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 17/32 (53%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG  KT +A+ +A E G+NF S  GP
Sbjct: 535 VLMFGPPGCSKTMIAKALATESGLNFLSIKGP 566


>gi|269467848|gb|EEZ79591.1| DNA polymerase III, gamma/tau subunit [uncultured SUP05 cluster
          bacterium]
          Length = 528

 Score = 39.7 bits (91), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 6/68 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
          RP T  E  GQ      +K  I A  A  ++L H  LF G  G+GKTT+A++ A+ +   
Sbjct: 13 RPHTFSEMVGQTHT---VKTLINALDA--DSLHHAFLFTGTRGVGKTTIARIFAKSINCE 67

Query: 82 FRSTSGPV 89
             +S P 
Sbjct: 68 AGVSSKPC 75


>gi|296141683|ref|YP_003648926.1| DNA polymerase III subunits gamma/tau [Tsukamurella paurometabola
          DSM 20162]
 gi|296029817|gb|ADG80587.1| DNA polymerase III, subunits gamma and tau [Tsukamurella
          paurometabola DSM 20162]
          Length = 737

 Score = 39.7 bits (91), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 6/68 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
          RP T  E  GQ      L V +++ +     ++H  LF GP G GKT+ A+++AR L   
Sbjct: 8  RPATFAEVVGQEHVTEPLSVALDSGR-----INHAYLFSGPRGCGKTSSARILARSLNCE 62

Query: 82 FRSTSGPV 89
             TS P 
Sbjct: 63 QGPTSTPC 70


>gi|284030230|ref|YP_003380161.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Kribbella
           flavida DSM 17836]
 gi|283809523|gb|ADB31362.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Kribbella
           flavida DSM 17836]
          Length = 431

 Score = 39.7 bits (91), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------ED 105
           A  ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+        D
Sbjct: 117 AKSNILLIGPTGCGKTYLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAAD 176

Query: 106 RDV-------LFIDEIHRLS 118
            DV       ++IDE+ +++
Sbjct: 177 YDVKKAETGIIYIDEVDKIA 196


>gi|227497061|ref|ZP_03927311.1| ATP-dependent metalloprotease FtsH [Actinomyces urogenitalis DSM
           15434]
 gi|226833458|gb|EEH65841.1| ATP-dependent metalloprotease FtsH [Actinomyces urogenitalis DSM
           15434]
          Length = 721

 Score = 39.7 bits (91), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 249 VLLYGPPGTGKTLLAKAVAGEAGVPFFSMSG 279


>gi|209881462|ref|XP_002142169.1| ATPase, AAA family protein [Cryptosporidium muris RN66]
 gi|209557775|gb|EEA07820.1| ATPase, AAA family protein [Cryptosporidium muris RN66]
          Length = 626

 Score = 39.7 bits (91), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 86/207 (41%), Gaps = 38/207 (18%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTS---------GPVIAKAGDLAALLTNLEDRD 107
           +LF GPPG GKTT A+++++   +     S         G    K   +  L    ++  
Sbjct: 404 ILFEGPPGTGKTTSARIISKVAKIPLLYVSLENIISKWYGESEQKLAQVFNLAKQFDNGC 463

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFT----------LI 157
           ++FIDEI  L+         +  D   ++  G   S R + + L +            LI
Sbjct: 464 IIFIDEIDTLA---------SSRDNTFNMHEG---SKRILSVLLRKLDGFDTIKDKILLI 511

Query: 158 AATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRG 217
            AT R   +     +R    I  +  + ++ K I Q+ AK     + DE   E+   S+ 
Sbjct: 512 CATNRRNDIDQAFINRIDSTIYFHLPDEKERKAIFQQYAK----HLNDEQLSEL---SKL 564

Query: 218 TPRIAGRLLRRVRDFAEVAHAKTITRE 244
           + +++GR +R V   AE   A  I ++
Sbjct: 565 SNKLSGRAIRHVCLEAEREWAANILKK 591


>gi|193211748|ref|YP_001997701.1| ATP-dependent metalloprotease FtsH [Chlorobaculum parvum NCIB 8327]
 gi|193085225|gb|ACF10501.1| ATP-dependent metalloprotease FtsH [Chlorobaculum parvum NCIB 8327]
          Length = 703

 Score = 39.7 bits (91), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 50/109 (45%), Gaps = 9/109 (8%)

Query: 15  EDADISLLRPRTLEEFTGQV-EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           E   IS      L+E  G+V E    LK   +  K   +    VL VGPPG GKT LA+ 
Sbjct: 190 EHTRISFKDVAGLDEAKGEVMEVVDFLKDPKKYTKLGGKLPKGVLLVGPPGTGKTLLAKA 249

Query: 74  VARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEI 114
           VA E  V F S SG       V   A  +  L    +++   ++FIDEI
Sbjct: 250 VAGEADVPFFSISGSDFVEMFVGVGAARVRDLFKQAKEKAPCIIFIDEI 298


>gi|220917260|ref|YP_002492564.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|310943116|sp|B8J992|FTSH_ANAD2 RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|219955114|gb|ACL65498.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 706

 Score = 39.7 bits (91), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 36/71 (50%), Gaps = 10/71 (14%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI---------AKAGDLAALLTNLEDRD 107
           VL VGPPG GKT LA+  A E GV F S SG            A+  DL A  T  +   
Sbjct: 242 VLLVGPPGTGKTLLARATAGEAGVPFFSLSGSEFVEMFVGVGAARVRDLFAQATQ-KAPC 300

Query: 108 VLFIDEIHRLS 118
           ++FIDE+  L 
Sbjct: 301 IVFIDELDALG 311


>gi|197122472|ref|YP_002134423.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter sp. K]
 gi|196172321|gb|ACG73294.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter sp. K]
          Length = 705

 Score = 39.7 bits (91), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 36/71 (50%), Gaps = 10/71 (14%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI---------AKAGDLAALLTNLEDRD 107
           VL VGPPG GKT LA+  A E GV F S SG            A+  DL A  T  +   
Sbjct: 241 VLLVGPPGTGKTLLARATAGEAGVPFFSLSGSEFVEMFVGVGAARVRDLFAQATQ-KAPC 299

Query: 108 VLFIDEIHRLS 118
           ++FIDE+  L 
Sbjct: 300 IVFIDELDALG 310


>gi|161506860|ref|YP_001576814.1| cell division protein [Lactobacillus helveticus DPC 4571]
 gi|160347849|gb|ABX26523.1| Cell division protein [Lactobacillus helveticus DPC 4571]
          Length = 721

 Score = 39.7 bits (91), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 33/66 (50%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108
           VL  GPPG GKT LA+ VA E  V F S SG       V   A  +  L  N +     +
Sbjct: 229 VLLEGPPGTGKTLLARAVAGEANVPFYSISGSDFVEMFVGVGASRVRDLFNNAKKNAPSI 288

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 289 IFIDEI 294


>gi|148988623|ref|ZP_01820056.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae SP6-BS73]
 gi|147925824|gb|EDK76899.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae SP6-BS73]
          Length = 410

 Score = 39.7 bits (91), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLT--------NL 103
           ++L +GP G GKT LAQ +A+ L V F       + +AG    D+  +L         N+
Sbjct: 114 NILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQVADFNI 173

Query: 104 E--DRDVLFIDEIHRLS 118
           E  +R ++++DEI +++
Sbjct: 174 ERAERGIIYVDEIDKIA 190


>gi|23956364|ref|NP_705800.1| katanin p60 ATPase-containing subunit A-like 1 [Mus musculus]
 gi|60390206|sp|Q8K0T4|KATL1_MOUSE RecName: Full=Katanin p60 ATPase-containing subunit A-like 1;
           Short=Katanin p60 subunit A-like 1; AltName: Full=p60
           katanin-like 1
 gi|20987888|gb|AAH30434.1| Katanin p60 subunit A-like 1 [Mus musculus]
          Length = 488

 Score = 39.7 bits (91), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL VGPPG GKT LA+ VA E G  F + S   +
Sbjct: 242 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTL 275


>gi|304437097|ref|ZP_07397060.1| cell division protein FtsH [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304370048|gb|EFM23710.1| cell division protein FtsH [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 664

 Score = 39.7 bits (91), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F + SG
Sbjct: 196 VLLFGPPGTGKTLLAKAVAGEAGVQFFTISG 226


>gi|303255354|ref|ZP_07341424.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           pneumoniae BS455]
 gi|302597722|gb|EFL64798.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           pneumoniae BS455]
          Length = 410

 Score = 39.7 bits (91), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLT--------NL 103
           ++L +GP G GKT LAQ +A+ L V F       + +AG    D+  +L         N+
Sbjct: 114 NILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQVADFNI 173

Query: 104 E--DRDVLFIDEIHRLS 118
           E  +R ++++DEI +++
Sbjct: 174 ERAERGIIYVDEIDKIA 190


>gi|302836203|ref|XP_002949662.1| hypothetical protein VOLCADRAFT_74350 [Volvox carteri f.
           nagariensis]
 gi|300265021|gb|EFJ49214.1| hypothetical protein VOLCADRAFT_74350 [Volvox carteri f.
           nagariensis]
          Length = 692

 Score = 39.7 bits (91), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
            L VGPPG GKT LA+ +A E GV F S SG
Sbjct: 257 CLLVGPPGTGKTLLAKAIAGEAGVPFFSVSG 287


>gi|302841647|ref|XP_002952368.1| hypothetical protein VOLCADRAFT_105496 [Volvox carteri f.
           nagariensis]
 gi|300262304|gb|EFJ46511.1| hypothetical protein VOLCADRAFT_105496 [Volvox carteri f.
           nagariensis]
          Length = 1104

 Score = 39.7 bits (91), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 48/105 (45%), Gaps = 15/105 (14%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKAR-------AEALDHVLFVGPPGLGKTTLAQVVARE 77
           RT ++  G  EA   L+  +E  K         A+    VL  GPPG GKT LA+ VA E
Sbjct: 446 RTFKDVKGCDEAKEELREVVEFLKNPGKFTRLGAKLPKGVLLTGPPGTGKTLLAKAVAGE 505

Query: 78  LGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEI 114
            GV F   +G       V   +  + AL    + R   ++FIDEI
Sbjct: 506 AGVPFFYRAGSEFEELYVGVGSRRMRALFAAAKKRSPCIVFIDEI 550


>gi|297844582|ref|XP_002890172.1| hypothetical protein ARALYDRAFT_889048 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297336014|gb|EFH66431.1| hypothetical protein ARALYDRAFT_889048 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 766

 Score = 39.7 bits (91), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 10/67 (14%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED---------RD 107
           +LF GPPG GKT LA  +A E+GV F   S   +  +G   A   N+ +           
Sbjct: 231 ILFHGPPGCGKTKLANAIANEVGVPFYKISATDVV-SGVSGASEENIRELFSKAYRTAPS 289

Query: 108 VLFIDEI 114
           ++FIDEI
Sbjct: 290 IVFIDEI 296



 Score = 37.4 bits (85), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 16/30 (53%), Positives = 18/30 (60%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           L  GPPG GKT +A+ VA E G NF    G
Sbjct: 524 LLYGPPGCGKTLIAKAVANEAGANFMHIKG 553


>gi|260776381|ref|ZP_05885276.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260607604|gb|EEX33869.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 427

 Score = 39.7 bits (91), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LA+ +AR L V F       + +AG +   + N+            
Sbjct: 116 NILLIGPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 175

Query: 104 --EDRDVLFIDEIHRLS 118
              +R +++IDEI ++S
Sbjct: 176 AKAERGIVYIDEIDKIS 192


>gi|260173527|ref|ZP_05759939.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. D2]
 gi|315921797|ref|ZP_07918037.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. D2]
 gi|313695672|gb|EFS32507.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. D2]
          Length = 621

 Score = 39.7 bits (91), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 71/316 (22%), Positives = 111/316 (35%), Gaps = 64/316 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP T E   GQ    + LK  I   K     L H  LF GP G+GKTT A++ A+ +   
Sbjct: 12  RPSTFESVVGQRALTTTLKNAIATQK-----LAHAYLFCGPRGVGKTTCARIFAKTINCM 66

Query: 82  FRSTSGPVIAKAGDLAAL----LTNLEDRDVLFIDEIHRLSIIVEEILYP---------- 127
             +  G    +     A       N+ + D    + +  +  +VE++  P          
Sbjct: 67  TPTADGEACNQCESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYI 126

Query: 128 -------AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                  +   F   L   E P   ++         I ATT    +   +  R  I    
Sbjct: 127 IDEVHMLSASAFNAFLKTLEEPPRHAI--------FILATTEKHKILPTILSRCQI-YDF 177

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA--EVAHA 238
           N   +ED    +   A   G+    EA   IAM++ G  R A  +  +V  F    + + 
Sbjct: 178 NRISVEDTVNHLSYVASKEGITAEPEALNVIAMKADGGMRDALSIFDQVVSFTGGNITYK 237

Query: 239 KTI-------------------TREIADAALLRLAIDKMGFDQLDLRYLTMIARNF---- 275
             I                     +++DA LL   I   GFD     ++T ++ +F    
Sbjct: 238 SVIDNLNVLDYEYYFRLTDCFLENKVSDALLLFNDILNKGFD--GSHFITGLSSHFRDLL 295

Query: 276 -GGGPVGIETISAGLS 290
            G  PV +  +  G S
Sbjct: 296 VGKDPVTLPLLEVGAS 311


>gi|169834164|ref|YP_001694974.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           pneumoniae Hungary19A-6]
 gi|168996666|gb|ACA37278.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae Hungary19A-6]
          Length = 402

 Score = 39.7 bits (91), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +A+ L V F       + +AG    D+  +L  L        
Sbjct: 106 NILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNI 165

Query: 104 --EDRDVLFIDEIHRLS 118
              +R ++++DEI +++
Sbjct: 166 ERAERGIIYVDEIDKIA 182


>gi|167629104|ref|YP_001679603.1| ATP-dependent lon protease [Heliobacterium modesticaldum Ice1]
 gi|167591844|gb|ABZ83592.1| ATP-dependent lon protease [Heliobacterium modesticaldum Ice1]
          Length = 658

 Score = 39.7 bits (91), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 5/63 (7%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           +VS   + + +LRPR L E  GQ  A   +      +K  +    H+L  GPPG+GKTT 
Sbjct: 161 SVSLARSAMEMLRPRQLNEVVGQERAVQAI-----LSKLASPYPQHILCYGPPGVGKTTA 215

Query: 71  AQV 73
           A++
Sbjct: 216 ARL 218


>gi|170093437|ref|XP_001877940.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164647799|gb|EDR12043.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 1027

 Score = 39.7 bits (91), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 84/207 (40%), Gaps = 33/207 (15%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLA 71
           + E+ +IS       E+  G  E  S +  F+   K R      ++  VGPPG+GKT++ 
Sbjct: 473 TPENYNISHAEKVLDEDHYGLSEVKSRILEFLAVGKLRGTVQGKIICLVGPPGVGKTSIG 532

Query: 72  QVVARELGVN-FRSTSGP--------------VIAKAGDLAALLTNLEDRDVL-FIDEIH 115
           + ++R LG   FR + G               V A  G +   L  +E  + L  IDE+ 
Sbjct: 533 KSISRALGRQFFRFSVGGLTDVAEIKGHRRTYVGALPGKIIQALKRVETENPLVLIDEVD 592

Query: 116 RLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           ++   +         E+L P      LD  +        V ++LSR   +     +  + 
Sbjct: 593 KIGRGINGDPASALLEMLDPEQNSGFLDHYM-------DVPVDLSRVLFVCTANNLDTIP 645

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQR 194
            PL DR  + + ++ Y  E+   I  R
Sbjct: 646 APLLDRMEV-LEVSGYVSEEKAVIASR 671


>gi|150865406|ref|XP_001384609.2| hypothetical protein PICST_45980 [Scheffersomyces stipitis CBS
           6054]
 gi|300681245|sp|A3LUF7|LONP2_PICST RecName: Full=Lon protease homolog 2, peroxisomal
 gi|149386662|gb|ABN66580.2| predicted protein [Scheffersomyces stipitis CBS 6054]
          Length = 1180

 Score = 39.7 bits (91), Expect = 0.59,   Method: Composition-based stats.
 Identities = 43/184 (23%), Positives = 72/184 (39%), Gaps = 43/184 (23%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD----------------LAALL 100
           ++  GPPG GKT+LA+ +A  LG NF+  S   +    +                + AL 
Sbjct: 663 IMLAGPPGTGKTSLAKSIASSLGRNFQRISLGGVKDESEIRGHRRTYVGAMPGLIIQALR 722

Query: 101 TNLEDRDVLFIDEIHRL--------------SIIVEEILYPAMEDFQLDLMVGEGPSARS 146
            +     V+ +DEI ++              S  + E+L P      +D  +G       
Sbjct: 723 KSRSMNPVILLDEIDKVIGGSSGVNKFNGDPSAALLEVLDPEQNTSFIDHYLG------- 775

Query: 147 VKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED-----LKTIVQRGAKLTGL 201
             ++LS+   I        LT PL DR  + I ++ Y+  +      K ++ R  K  G 
Sbjct: 776 FPVDLSQVIFICTANEPHNLTRPLLDRLEM-IEVSAYDYNEKLIIGRKYLLPRQVKRNGF 834

Query: 202 AVTD 205
             +D
Sbjct: 835 PASD 838


>gi|126732555|ref|ZP_01748353.1| ATP-dependent protease ATP-binding subunit [Sagittula stellata
           E-37]
 gi|126707001|gb|EBA06069.1| ATP-dependent protease ATP-binding subunit [Sagittula stellata
           E-37]
          Length = 421

 Score = 39.7 bits (91), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+         
Sbjct: 110 AKSNILLIGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASE 169

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDE+ +++
Sbjct: 170 YNVERAQRGIVYIDEVDKIT 189


>gi|147676386|ref|YP_001210601.1| DNA polymerase III, gamma/tau subunits [Pelotomaculum
          thermopropionicum SI]
 gi|146272483|dbj|BAF58232.1| DNA polymerase III, gamma/tau subunits [Pelotomaculum
          thermopropionicum SI]
          Length = 558

 Score = 39.7 bits (91), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 6/69 (8%)

Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGV 80
           RPRT  E  GQ      LK  +EA +     + H  +F G  G GKTT A+V+A+ L  
Sbjct: 10 WRPRTFGEIIGQEHITRTLKNAVEAGR-----VGHAYIFCGARGTGKTTAAKVLAKALNC 64

Query: 81 NFRSTSGPV 89
            R  + P 
Sbjct: 65 TGREGAEPC 73


>gi|86157920|ref|YP_464705.1| FtsH peptidase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|197122777|ref|YP_002134728.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter sp. K]
 gi|85774431|gb|ABC81268.1| membrane protease FtsH catalytic subunit [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|196172626|gb|ACG73599.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter sp. K]
          Length = 635

 Score = 39.7 bits (91), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL +GPPG GKT LA+ VA E GV F S SG    +   G  A+ + +L ++       +
Sbjct: 191 VLLMGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQGKKNAPCI 250

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 251 IFIDEI 256


>gi|78211619|ref|YP_380398.1| ATP-dependent protease ATP-binding subunit [Synechococcus sp.
           CC9605]
 gi|123579027|sp|Q3ANI9|CLPX_SYNSC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|78196078|gb|ABB33843.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Synechococcus
           sp. CC9605]
          Length = 449

 Score = 39.7 bits (91), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 4/73 (5%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNLEDRDVLFI 111
           ++L +GP G GKT LAQ +A  L V F       + +AG    D+  +L  L  +  + +
Sbjct: 137 NILLIGPTGCGKTLLAQTLAEMLDVPFAVADATTLTEAGYVGEDVENILLRLLQKAEMDV 196

Query: 112 DEIHRLSIIVEEI 124
           D+  R  I ++EI
Sbjct: 197 DQAQRGIIYIDEI 209


>gi|89070384|ref|ZP_01157691.1| ATP-dependent protease ATP-binding subunit [Oceanicola granulosus
           HTCC2516]
 gi|89044031|gb|EAR50206.1| ATP-dependent protease ATP-binding subunit [Oceanicola granulosus
           HTCC2516]
          Length = 422

 Score = 39.7 bits (91), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+         
Sbjct: 109 AKSNILLIGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASE 168

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDE+ +++
Sbjct: 169 YNVERAQRGIVYIDEVDKIT 188


>gi|134301131|ref|YP_001114627.1| endopeptidase La [Desulfotomaculum reducens MI-1]
 gi|134053831|gb|ABO51802.1| Endopeptidase La [Desulfotomaculum reducens MI-1]
          Length = 648

 Score = 39.7 bits (91), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 5/55 (9%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           + +LRP + EE  GQ  A   L      AK  +    H++  GPPG+GKTT A++
Sbjct: 169 MEILRPESFEEVIGQERAVKAL-----LAKLASPFPQHIILYGPPGVGKTTAARL 218


>gi|119717697|ref|YP_924662.1| ATP-dependent protease ATP-binding subunit ClpX [Nocardioides sp.
           JS614]
 gi|166214794|sp|A1SME0|CLPX_NOCSJ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|119538358|gb|ABL82975.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Nocardioides
           sp. JS614]
          Length = 426

 Score = 39.7 bits (91), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---ED 105
           A  ++L +GP G GKT LAQ +AR L V F       + +AG    D+  +L  L    D
Sbjct: 116 AKSNILVIGPTGCGKTYLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAAD 175

Query: 106 RDV-------LFIDEIHRLS 118
            DV       ++IDEI +++
Sbjct: 176 YDVKKAETGIIYIDEIDKVA 195


>gi|325847170|ref|ZP_08169969.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325480950|gb|EGC83996.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 399

 Score = 39.7 bits (91), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 30/134 (22%)

Query: 15  EDADISLLRPRTLEEFTGQV-----EACSNLKVFIEAAKARAEA-----------LDHVL 58
           ++ DI L +PR ++E+  Q       A   L V +     R  +             ++L
Sbjct: 50  KNMDIELAKPREIKEYLDQYVIQQEMAKKTLSVSVYNHYKRINSNYDKDDGVELQKSNIL 109

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRD---- 107
            +GP G GKT LAQ +A++L V F       + +AG +   + N+        D D    
Sbjct: 110 MLGPTGSGKTLLAQTLAKKLNVPFAIADATSLTEAGYVGEDVENIILKLVQAADYDIELA 169

Query: 108 ---VLFIDEIHRLS 118
              +++IDEI +++
Sbjct: 170 QTGIIYIDEIDKIT 183


>gi|302687963|ref|XP_003033661.1| hypothetical protein SCHCODRAFT_75067 [Schizophyllum commune H4-8]
 gi|300107356|gb|EFI98758.1| hypothetical protein SCHCODRAFT_75067 [Schizophyllum commune H4-8]
          Length = 597

 Score = 39.7 bits (91), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG  KT LA+  A E GVNF +  GP
Sbjct: 371 VLLYGPPGCSKTVLARACACESGVNFVAVKGP 402


>gi|294795209|ref|ZP_06760343.1| cell division protein FtsH [Veillonella sp. 3_1_44]
 gi|294454001|gb|EFG22376.1| cell division protein FtsH [Veillonella sp. 3_1_44]
          Length = 642

 Score = 39.7 bits (91), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL  GPPG GKT LA+ VA E GV F + SG       V   A  +  L T  +     +
Sbjct: 190 VLLAGPPGTGKTLLAKAVAGEAGVPFFTISGSDFVEMFVGVGASRVRDLFTQAKKNAPCI 249

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 250 IFIDEI 255


>gi|256828015|ref|YP_003156743.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Desulfomicrobium baculatum DSM 4028]
 gi|256577191|gb|ACU88327.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Desulfomicrobium baculatum DSM 4028]
          Length = 416

 Score = 39.7 bits (91), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLT--------NL 103
           ++L +GP G GKT LAQ +AR L V F       + +AG    D+  +L         NL
Sbjct: 112 NILLIGPTGSGKTLLAQTLARILKVPFAIADATTLTEAGYVGEDVENILVQLVQNADYNL 171

Query: 104 ED--RDVLFIDEIHRLS 118
           E   + ++++DEI ++S
Sbjct: 172 ETAAKGIIYVDEIDKIS 188


>gi|254512525|ref|ZP_05124592.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Rhodobacteraceae bacterium KLH11]
 gi|221536236|gb|EEE39224.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Rhodobacteraceae bacterium KLH11]
          Length = 421

 Score = 39.7 bits (91), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+         
Sbjct: 111 AKSNILLIGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASE 170

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDE+ +++
Sbjct: 171 YNVERAQRGIVYIDEVDKIT 190


>gi|195568356|ref|XP_002102182.1| GD19637 [Drosophila simulans]
 gi|194198109|gb|EDX11685.1| GD19637 [Drosophila simulans]
          Length = 572

 Score = 39.7 bits (91), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108
           VL VGPPG GKT LA+ VA E G  F + S   +     G+   +      +        
Sbjct: 329 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSATLTSKYRGESEKMVRLLFEMARFYAPST 388

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 389 IFIDEIDSL 397


>gi|172041381|ref|YP_001801095.1| cell division protein [Corynebacterium urealyticum DSM 7109]
 gi|171852685|emb|CAQ05661.1| cell division protein [Corynebacterium urealyticum DSM 7109]
          Length = 837

 Score = 39.7 bits (91), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 207 VLLYGPPGTGKTLLARAVAGESGVPFYSISG 237


>gi|158423233|ref|YP_001524525.1| ATP-dependent protease ATP-binding subunit ClpX [Azorhizobium
           caulinodans ORS 571]
 gi|172047857|sp|A8HYF4|CLPX_AZOC5 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|158330122|dbj|BAF87607.1| ATP-dependent Clp protease ATP-binding subunit [Azorhizobium
           caulinodans ORS 571]
          Length = 422

 Score = 39.7 bits (91), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  +++ +GP G GKT LAQ +AR L V F       + +AG +   + N+         
Sbjct: 110 AKSNIMLIGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 169

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDEI ++S
Sbjct: 170 YNVERAQRGIVYIDEIDKIS 189


>gi|148272647|ref|YP_001222208.1| ATP-dependent protease ATP-binding subunit ClpX [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|166214771|sp|A5CR08|CLPX_CLAM3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|147830577|emb|CAN01512.1| ATP-dependent protease, ATP-binding subunit [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 426

 Score = 39.7 bits (91), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------ED 105
           A  ++L +GP G GKT LAQ +A+ L V F       + +AG +   + N+        D
Sbjct: 117 AKSNILLIGPTGCGKTYLAQTLAKRLNVPFAVADATALTEAGYVGEDVENILLKLIQAAD 176

Query: 106 RDV-------LFIDEIHRLS 118
            DV       ++IDE+ +++
Sbjct: 177 YDVKRAETGIIYIDEVDKIA 196


>gi|118474218|ref|YP_892493.1| putative cell division protein FtsH-like protein [Campylobacter
           fetus subsp. fetus 82-40]
 gi|118413444|gb|ABK81864.1| putative Cell division protein FtsH homolog [Campylobacter fetus
           subsp. fetus 82-40]
          Length = 643

 Score = 39.7 bits (91), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNL--EDRDV 108
           VL VGPPG GKT LA+ VA E  V F S SG       V   A  +  L  N   E   +
Sbjct: 209 VLLVGPPGTGKTLLAKAVAGEADVPFFSVSGSSFIEMFVGVGASRVRDLFENAKKEAPAI 268

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 269 VFIDEI 274


>gi|126701185|ref|YP_001090082.1| cell division protein [Clostridium difficile 630]
 gi|260685079|ref|YP_003216364.1| cell division protein [Clostridium difficile CD196]
 gi|260688737|ref|YP_003219871.1| cell division protein [Clostridium difficile R20291]
 gi|296452819|ref|ZP_06894506.1| M41 family endopeptidase FtsH [Clostridium difficile NAP08]
 gi|296879929|ref|ZP_06903901.1| M41 family endopeptidase FtsH [Clostridium difficile NAP07]
 gi|115252622|emb|CAJ70465.1| Cell division protease FtsH2 [Clostridium difficile]
 gi|260211242|emb|CBA66769.1| cell division protein [Clostridium difficile CD196]
 gi|260214754|emb|CBE07450.1| cell division protein [Clostridium difficile R20291]
 gi|296258367|gb|EFH05275.1| M41 family endopeptidase FtsH [Clostridium difficile NAP08]
 gi|296429043|gb|EFH14918.1| M41 family endopeptidase FtsH [Clostridium difficile NAP07]
          Length = 664

 Score = 39.7 bits (91), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 30/54 (55%), Gaps = 3/54 (5%)

Query: 34  VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           V+   N K +IE     A     +L VGPPG GKT L++ VA E GV F S SG
Sbjct: 187 VDFLKNPKKYIELG---ARIPKGMLMVGPPGTGKTYLSRAVAGEAGVPFFSISG 237


>gi|86158199|ref|YP_464984.1| FtsH-2 peptidase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774710|gb|ABC81547.1| membrane protease FtsH catalytic subunit [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 702

 Score = 39.7 bits (91), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 36/71 (50%), Gaps = 10/71 (14%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI---------AKAGDLAALLTNLEDRD 107
           VL VGPPG GKT LA+  A E GV F S SG            A+  DL A  T  +   
Sbjct: 241 VLLVGPPGTGKTLLARATAGEAGVPFFSLSGSEFVEMFVGVGAARVRDLFAQATQ-KAPC 299

Query: 108 VLFIDEIHRLS 118
           ++FIDE+  L 
Sbjct: 300 IVFIDELDALG 310


>gi|78485522|ref|YP_391447.1| ATP-dependent protease ATP-binding subunit [Thiomicrospira
           crunogena XCL-2]
 gi|78363808|gb|ABB41773.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Thiomicrospira
           crunogena XCL-2]
          Length = 416

 Score = 39.7 bits (91), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +AR L V F       + +AG    D+ +++  L        
Sbjct: 108 NILLIGPTGSGKTLLAQTLARLLDVPFAIADATTLTEAGYVGEDVESIVLKLLQRCDNDA 167

Query: 104 --EDRDVLFIDEIHRLS 118
              +R +++IDEI +++
Sbjct: 168 EKAERGIIYIDEIDKIT 184


>gi|78223078|ref|YP_384825.1| Lon-A peptidase [Geobacter metallireducens GS-15]
 gi|78194333|gb|ABB32100.1| ATP-dependent proteinase, Serine peptidase, MEROPS family S16
           [Geobacter metallireducens GS-15]
          Length = 805

 Score = 39.7 bits (91), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 94/219 (42%), Gaps = 49/219 (22%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTS-----------GPVIAKAGDL-AALLTNLE 104
           +  VGPPG+GKT+LA+ +A   G  F   S           G      G +   ++ NL+
Sbjct: 359 LCLVGPPGVGKTSLARSIATATGRKFVKMSLGGMRDEAEIRGHRRTYVGAMPGKIIQNLK 418

Query: 105 ----DRDVLFIDEIHRLS--------IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152
               +  V  +DE+ ++S          + E+L P       D  +        V+ +LS
Sbjct: 419 KAGSNNPVFLLDELDKMSSDFRGDPASAMLEVLDPEQNAHFSDHFL-------DVEYDLS 471

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFY-EIEDL----KTIVQRGAKLTGLAVTDEA 207
           R   IA    +  +  PL DR  + IRL+ Y E E L    + +V++  +  GLA+    
Sbjct: 472 RVMFIATANSIHGIPRPLLDRLEV-IRLDGYTEHEKLAIAERYLVKKQMEANGLALE--- 527

Query: 208 ACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
              +++ S+        +L  +R ++  A  + + REIA
Sbjct: 528 --RVSISSKA-------ILDMIRFYSREAGVRNLEREIA 557


>gi|332200133|gb|EGJ14206.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae GA47368]
          Length = 401

 Score = 39.7 bits (91), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +A+ L V F       + +AG    D+  +L  L        
Sbjct: 105 NILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNI 164

Query: 104 --EDRDVLFIDEIHRLS 118
              +R ++++DEI +++
Sbjct: 165 ERAERGIIYVDEIDKIA 181


>gi|328954114|ref|YP_004371448.1| DNA polymerase III, subunits gamma and tau [Desulfobacca
           acetoxidans DSM 11109]
 gi|328454438|gb|AEB10267.1| DNA polymerase III, subunits gamma and tau [Desulfobacca
           acetoxidans DSM 11109]
          Length = 546

 Score = 39.7 bits (91), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  +E  GQ      LK  +E+ +  A A    LF GP G+GKT++A+++A+ L  N 
Sbjct: 11  RPQNFDEVVGQEHITRTLKNALESGRV-AHAF---LFSGPRGVGKTSIARILAKAL--NC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID 112
                P           +T     DVL ID
Sbjct: 65  AEGPAPTPCNRCQSCVEITQGHSLDVLEID 94


>gi|327268864|ref|XP_003219215.1| PREDICTED: katanin p60 ATPase-containing subunit A-like 1-like
           [Anolis carolinensis]
          Length = 489

 Score = 39.7 bits (91), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL VGPPG GKT LA+ VA E G  F + S   +
Sbjct: 243 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTL 276


>gi|326494184|dbj|BAJ90361.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 594

 Score = 39.7 bits (91), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL +GPPG GKT LA+ VA E GV F + SG
Sbjct: 140 VLLMGPPGTGKTMLARAVAGEAGVPFCACSG 170


>gi|319778292|ref|YP_004129205.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Taylorella
           equigenitalis MCE9]
 gi|317108316|gb|ADU91062.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Taylorella
           equigenitalis MCE9]
          Length = 409

 Score = 39.7 bits (91), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104
           ++L +GP G GKT LAQ +A++L V F       + +AG +          LL N +   
Sbjct: 113 NILLIGPTGSGKTLLAQTIAKQLDVPFAMADATTLTEAGYVGEDVEHIIQKLLQNCDFDI 172

Query: 105 ---DRDVLFIDEIHRLS 118
               + +++IDEI +++
Sbjct: 173 EKAQQAIIYIDEIDKIA 189


>gi|297745145|emb|CBI38984.3| unnamed protein product [Vitis vinifera]
          Length = 236

 Score = 39.7 bits (91), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 9/67 (13%)

Query: 57  VLFVGPPGLGKTTLAQVVARELG-----VNFRS--TSGPVIAKAGDLAALLTNLEDR--D 107
           +L  GPPGLGKTTLA V A+  G     +N     +S  + AK  D+  + + + D   +
Sbjct: 28  LLLCGPPGLGKTTLAHVAAKHCGYRVVEINASDDRSSSTIEAKILDVVQMNSVMADSKPN 87

Query: 108 VLFIDEI 114
            L IDEI
Sbjct: 88  CLVIDEI 94


>gi|302525855|ref|ZP_07278197.1| shikimate kinase [Streptomyces sp. AA4]
 gi|302434750|gb|EFL06566.1| shikimate kinase [Streptomyces sp. AA4]
          Length = 174

 Score = 39.7 bits (91), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 17/37 (45%), Positives = 26/37 (70%)

Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG 94
          + +GPPG GK+T+  ++A  LGV FR T   ++A+AG
Sbjct: 6  VVIGPPGSGKSTVGPLLAAALGVTFRDTDDDIVARAG 42


>gi|269797567|ref|YP_003311467.1| ATP-dependent metalloprotease FtsH [Veillonella parvula DSM 2008]
 gi|310946772|sp|D1BLD0|FTSH_VEIPT RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|269094196|gb|ACZ24187.1| ATP-dependent metalloprotease FtsH [Veillonella parvula DSM 2008]
          Length = 642

 Score = 39.7 bits (91), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL  GPPG GKT LA+ VA E GV F + SG       V   A  +  L T  +     +
Sbjct: 190 VLLAGPPGTGKTLLAKAVAGEAGVPFFTISGSDFVEMFVGVGASRVRDLFTQAKKNAPCI 249

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 250 IFIDEI 255


>gi|224010104|ref|XP_002294010.1| peroxisomal biogenesis factor 6, peroxisomal assembly factor w,
           Paf2, pex6-like protein [Thalassiosira pseudonana
           CCMP1335]
 gi|220970682|gb|EED89019.1| peroxisomal biogenesis factor 6, peroxisomal assembly factor w,
           Paf2, pex6-like protein [Thalassiosira pseudonana
           CCMP1335]
          Length = 303

 Score = 39.7 bits (91), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 4/66 (6%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLAALLTNLEDR--DVLFID 112
           +L  GPPG GKT +A+ VA E G+ F S  GP +  +  G+  A +  + +    VLF D
Sbjct: 41  ILLFGPPGTGKTLVAKAVAAECGLPFLSIKGPELLGSYVGESEANVRAVFEAAPSVLFFD 100

Query: 113 EIHRLS 118
           E+  L+
Sbjct: 101 ELDSLA 106


>gi|209876712|ref|XP_002139798.1| replication factor C subunit protein [Cryptosporidium muris RN66]
 gi|209555404|gb|EEA05449.1| replication factor C subunit protein, putative [Cryptosporidium
           muris RN66]
          Length = 845

 Score = 39.7 bits (91), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 20/36 (55%), Positives = 23/36 (63%), Gaps = 5/36 (13%)

Query: 44  IEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           IE   ARA     VL  GPPG+GKTT A +VA+E G
Sbjct: 319 IENINARA-----VLLSGPPGIGKTTTANLVAKECG 349


>gi|194746625|ref|XP_001955777.1| GF16069 [Drosophila ananassae]
 gi|190628814|gb|EDV44338.1| GF16069 [Drosophila ananassae]
          Length = 578

 Score = 39.7 bits (91), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108
           VL VGPPG GKT LA+ VA E G  F + S   +     G+   +      +        
Sbjct: 335 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSATLTSKYRGESEKMVRLLFEMARFYAPST 394

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 395 IFIDEIDSL 403


>gi|220917560|ref|YP_002492864.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219955414|gb|ACL65798.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 635

 Score = 39.7 bits (91), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL +GPPG GKT LA+ VA E GV F S SG    +   G  A+ + +L ++       +
Sbjct: 191 VLLMGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQGKKNAPCI 250

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 251 IFIDEI 256


>gi|156120691|ref|NP_001095492.1| paraplegin [Bos taurus]
 gi|154757434|gb|AAI51633.1| SPG7 protein [Bos taurus]
 gi|296477959|gb|DAA20074.1| spastic paraplegia 7 [Bos taurus]
          Length = 779

 Score = 39.7 bits (91), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 81/191 (42%), Gaps = 34/191 (17%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           + ++  G  EA   +K F++  K+        A+     L +GPPG GKT LA+ VA E 
Sbjct: 307 SFKDVAGMHEAKLEVKEFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA 366

Query: 79  GVNFRSTSGPVIAK------AGDLAALLTNLEDRD--VLFIDEI----HRLSIIVEEILY 126
            V F + +GP   +      A  + +L      R   +++IDEI     + S  V     
Sbjct: 367 QVPFLAMAGPEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTAVSGFSN 426

Query: 127 PAMEDFQLDLMV---GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
              E     L+V   G G +   +        ++AAT R  +L N L      P RL+ +
Sbjct: 427 TEEEQTLNQLLVEMDGMGTTDHVI--------VLAATNRADILDNALLR----PGRLDRH 474

Query: 184 EIEDLKTIVQR 194
              DL T+ +R
Sbjct: 475 VFIDLPTLQER 485


>gi|153831438|ref|ZP_01984105.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae 623-39]
 gi|148873080|gb|EDL71215.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae 623-39]
          Length = 391

 Score = 39.7 bits (91), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LA+ +AR L V F       + +AG +   + N+            
Sbjct: 81  NILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 140

Query: 104 --EDRDVLFIDEIHRLS 118
              +R +++IDEI ++S
Sbjct: 141 AKAERGIVYIDEIDKIS 157


>gi|145592779|ref|YP_001157076.1| DNA polymerase III, subunits gamma and tau [Salinispora tropica
           CNB-440]
 gi|145302116|gb|ABP52698.1| DNA polymerase III, subunits gamma and tau [Salinispora tropica
           CNB-440]
          Length = 808

 Score = 39.7 bits (91), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 38/91 (41%), Gaps = 6/91 (6%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPRT  E  GQ      L   +   +     L+H  LF GP G GKT+ A+++AR L   
Sbjct: 10  RPRTFAEVIGQEHVTEPLSQALRGGR-----LNHAYLFSGPRGCGKTSSARILARSLNCE 64

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID 112
              T  P    A   A         DV+ ID
Sbjct: 65  HGPTPEPCGTCASCRALATDGAGSIDVIEID 95


>gi|134099316|ref|YP_001104977.1| ATPase central domain-containing protein [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291007297|ref|ZP_06565270.1| ATPase central domain-containing protein [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133911939|emb|CAM02052.1| AAA ATPase, central domain protein [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 424

 Score = 39.7 bits (91), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF------RSTSGPVIAKAGDLAALLTNLEDRD--V 108
           ++  GPPG GKT+ A+ +A  L   F      R         A  L A+   LED D  V
Sbjct: 198 IVLFGPPGTGKTSFAKAIASRLNWPFVELFPSRLAGSSPDGLAASLRAVFAELEDLDDLV 257

Query: 109 LFIDEIHRLS 118
           LFIDE+  ++
Sbjct: 258 LFIDEVEEIA 267


>gi|84489225|ref|YP_447457.1| replication factor C small subunit [Methanosphaera stadtmanae DSM
          3091]
 gi|110287813|sp|Q2NH89|RFCS_METST RecName: Full=Replication factor C small subunit; Short=RFC small
          subunit; AltName: Full=Clamp loader small subunit
 gi|84372544|gb|ABC56814.1| RfcS [Methanosphaera stadtmanae DSM 3091]
          Length = 321

 Score = 39.7 bits (91), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+TL++  GQ +    LK ++E      ++L +++F G  G+GKTT A  +A+ L
Sbjct: 10 RPQTLDDVVGQEQIVGRLKRYVEE-----KSLPNIMFTGFAGVGKTTCALALAKSL 60


>gi|59801072|ref|YP_207784.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae
           FA 1090]
 gi|293398934|ref|ZP_06643099.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           gonorrhoeae F62]
 gi|75356149|sp|Q5F8W5|CLPX_NEIG1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|59717967|gb|AAW89372.1| putative ATP-dependent Clp protease ATP-binding subunit [Neisseria
           gonorrhoeae FA 1090]
 gi|291610348|gb|EFF39458.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           gonorrhoeae F62]
          Length = 414

 Score = 39.7 bits (91), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---EDRDV 108
           ++L +GP G GKT LAQ +AR+L V F       + +AG    D+  ++T L    D DV
Sbjct: 114 NILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDV 173

Query: 109 -------LFIDEIHRLS 118
                  ++IDEI ++S
Sbjct: 174 EKARHGIVYIDEIDKIS 190


>gi|78357261|ref|YP_388710.1| Lon-A peptidase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
 gi|78219666|gb|ABB39015.1| ATP-dependent proteinase, Serine peptidase, MEROPS family S16
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
          Length = 819

 Score = 39.7 bits (91), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 103/258 (39%), Gaps = 69/258 (26%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           +  VGPPG+GKT+LA+ VA   G  F R + G V  +A              G +   L 
Sbjct: 365 LCLVGPPGVGKTSLARSVATATGREFVRLSLGGVRDEAEIRGHRRTYVGALPGKILQSLK 424

Query: 102 NLEDRDVLF-IDEIHRLSI--------IVEEILYPAME----DFQLDLMVGEGPSARSVK 148
            ++  + LF +DEI ++S          + E+L P       D  LDL            
Sbjct: 425 RVKFNNPLFCLDEIDKMSTDFRGDPSSALLEVLDPEQNGTFGDHYLDL-----------D 473

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY-EIEDL---------KTIVQRGAKL 198
            +LS+   I     +  +  PLQDR  I IRL  Y E E           K I Q G K 
Sbjct: 474 YDLSQIFFITTANSLHSIPLPLQDRMEI-IRLPGYLETEKRRIARDFLLPKQIEQHGLKP 532

Query: 199 TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKM 258
             + ++D A  +I                 +R +   A  + + REIA     + A+  +
Sbjct: 533 ENVRLSDNALLDI-----------------IRSYTREAGVRNLEREIA-TICRKSAMQLV 574

Query: 259 GFDQLDLRYLTMIARNFG 276
             D +D R +T+  +N G
Sbjct: 575 EKDDMD-RAVTVSRQNLG 591


>gi|15643889|ref|NP_228938.1| moxR protein, putative [Thermotoga maritima MSB8]
 gi|4981679|gb|AAD36208.1|AE001771_1 moxR protein, putative [Thermotoga maritima MSB8]
          Length = 305

 Score = 39.7 bits (91), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 69/158 (43%), Gaps = 28/158 (17%)

Query: 44  IEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL 103
           IE   A   A  HVL    PG+GKT LA+ +A  LGV+FR           DL  L   +
Sbjct: 20  IEVVVAALLAKGHVLMEDVPGVGKTMLARALALSLGVDFRRVQFTPDLLPTDLTGLY--I 77

Query: 104 EDR--------------DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKI 149
            DR              DVL  DEI+R +   +  L  AM + Q+ +   +G + R  + 
Sbjct: 78  YDRKKEDFVFKKGPVFTDVLLADEINRATPRTQSALLEAMAEGQVTV---DGVTHRLSE- 133

Query: 150 NLSRFTLIAATTRVGLL-TNPLQ----DRFGIPIRLNF 182
              RF +IA    +    T PL     DRF I +++ +
Sbjct: 134 ---RFFVIATQNPIEYEGTFPLPEAQLDRFMICVKMGY 168


>gi|254245033|ref|ZP_04938355.1| hypothetical protein PA2G_05917 [Pseudomonas aeruginosa 2192]
 gi|126198411|gb|EAZ62474.1| hypothetical protein PA2G_05917 [Pseudomonas aeruginosa 2192]
          Length = 799

 Score = 39.7 bits (91), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 71/166 (42%), Gaps = 40/166 (24%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           VL VGPPG+GKT++ + +A  LG  F R + G +  +A              G L   L 
Sbjct: 379 VLLVGPPGVGKTSIGKSIAESLGRPFYRFSVGGMRDEAEIKGHRRTYIGALPGKLVQALK 438

Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAME----DFQLDLMVGEGPSARSVK 148
            +E  + V+ +DEI +L    +        E L P       D  LDL           +
Sbjct: 439 EVEVMNPVIMLDEIDKLGASYQGDPASALLETLDPEQNVEFLDHYLDL-----------R 487

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           ++LS+   +     +  +  PL DR  + IRL+ Y  E+   I +R
Sbjct: 488 LDLSKVLFVCTANTLDSIPGPLLDRMEV-IRLSGYISEEKLAIAKR 532


>gi|327389757|gb|EGE88102.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae GA04375]
          Length = 401

 Score = 39.7 bits (91), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +A+ L V F       + +AG    D+  +L  L        
Sbjct: 105 NILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQVADFNI 164

Query: 104 --EDRDVLFIDEIHRLS 118
              +R ++++DEI +++
Sbjct: 165 ERAERGIIYVDEIDKIA 181


>gi|329116172|ref|ZP_08244889.1| DNA polymerase III, subunit gamma and tau [Streptococcus parauberis
           NCFD 2020]
 gi|326906577|gb|EGE53491.1| DNA polymerase III, subunit gamma and tau [Streptococcus parauberis
           NCFD 2020]
          Length = 558

 Score = 39.7 bits (91), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 8/91 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           R +T +E  GQ    + LK  +E+ K     + H  LF GP G GKT+ A++ A+ +   
Sbjct: 10  RSQTFDEMVGQSVISTTLKQAVESKK-----ISHAYLFSGPRGTGKTSAAKIFAKAMNCP 64

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID 112
            +    P      D+   +TN    DV+ ID
Sbjct: 65  NQVNGEP--CNNCDICHDITNGSLEDVIEID 93


>gi|315638250|ref|ZP_07893432.1| cell division protein (ftsH) [Campylobacter upsaliensis JV21]
 gi|315481786|gb|EFU72408.1| cell division protein (ftsH) [Campylobacter upsaliensis JV21]
          Length = 530

 Score = 39.7 bits (91), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           VL +GPPG+GKT +A+ VA E GV F   SG    +   G  A  +  L  R       +
Sbjct: 181 VLMIGPPGVGKTLIAKAVAGEAGVPFFYQSGSSFVEIYVGMGAKRVRELFSRAKMMAPSI 240

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 241 IFIDEI 246


>gi|315221693|ref|ZP_07863609.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           anginosus F0211]
 gi|315189180|gb|EFU22879.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           anginosus F0211]
          Length = 410

 Score = 39.7 bits (91), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +A+ L V F       + +AG    D+  +L  L        
Sbjct: 114 NILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNI 173

Query: 104 --EDRDVLFIDEIHRLS 118
              +R ++++DEI +++
Sbjct: 174 ERAERGIIYVDEIDKIA 190


>gi|308497384|ref|XP_003110879.1| CRE-YMEL-1 protein [Caenorhabditis remanei]
 gi|308242759|gb|EFO86711.1| CRE-YMEL-1 protein [Caenorhabditis remanei]
          Length = 735

 Score = 39.7 bits (91), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 56/114 (49%), Gaps = 9/114 (7%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSN-LKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           + V+ ED  ++    R ++E   +VE   + LK   + ++        VL VGPPG GKT
Sbjct: 232 QEVNPEDVQVTFDDVRGMDEAKLEVEEIVDYLKDPEKYSRLGGRLPKGVLLVGPPGTGKT 291

Query: 69  TLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEI 114
            LA+ +A E  V F  TSG    +   G  A  + +L D+       ++FIDEI
Sbjct: 292 LLARAIAGEAQVPFFHTSGSEFDEVLVGQGARRVRDLFDKAKARAPCIIFIDEI 345


>gi|307704381|ref|ZP_07641296.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           mitis SK597]
 gi|307708344|ref|ZP_07644811.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           mitis NCTC 12261]
 gi|307615790|gb|EFN94996.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           mitis NCTC 12261]
 gi|307622066|gb|EFO01088.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           mitis SK597]
          Length = 401

 Score = 39.7 bits (91), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +A+ L V F       + +AG    D+  +L  L        
Sbjct: 105 NILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNI 164

Query: 104 --EDRDVLFIDEIHRLS 118
              +R ++++DEI +++
Sbjct: 165 ERAERGIIYVDEIDKIA 181


>gi|301623590|ref|XP_002941102.1| PREDICTED: spermatogenesis-associated protein 5-like [Xenopus
           (Silurana) tropicalis]
          Length = 792

 Score = 39.7 bits (91), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 8/71 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           VL  GPPG  KT +A+ +A E G+NF +  GP +     G+    +  +  +       +
Sbjct: 565 VLLYGPPGCSKTMIAKALANESGLNFLAVKGPELMNKYVGESERAVREIFHKARAVAPSI 624

Query: 109 LFIDEIHRLSI 119
           LF DEI  L+I
Sbjct: 625 LFFDEIDALAI 635



 Score = 37.4 bits (85), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL  GPPG GKT +A+ +A E+G +    +GP I
Sbjct: 291 VLLYGPPGTGKTLIARAIANEVGAHVTVINGPEI 324


>gi|300120053|emb|CBK19607.2| unnamed protein product [Blastocystis hominis]
          Length = 508

 Score = 39.7 bits (91), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ V+ E   NF S  GP
Sbjct: 273 VLLYGPPGCGKTLLAKAVSNESRANFISIKGP 304


>gi|255322312|ref|ZP_05363458.1| Cell division protease FtsH homolog [Campylobacter showae RM3277]
 gi|255300685|gb|EET79956.1| Cell division protease FtsH homolog [Campylobacter showae RM3277]
          Length = 555

 Score = 39.7 bits (91), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG+GKT +A+ VA E GV F   SG
Sbjct: 192 VLMVGPPGVGKTLVAKAVAGEAGVPFFYQSG 222


>gi|255693690|ref|ZP_05417365.1| putative methanol dehydrogenase regulatory protein [Bacteroides
           finegoldii DSM 17565]
 gi|260620507|gb|EEX43378.1| putative methanol dehydrogenase regulatory protein [Bacteroides
           finegoldii DSM 17565]
          Length = 324

 Score = 39.7 bits (91), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 74/156 (47%), Gaps = 24/156 (15%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKAGDLAALLTNLEDR-------- 106
           HVL  G PG+ KT LA++ AR +  +F R    P +  +  L   + N++          
Sbjct: 48  HVLIEGVPGVAKTLLARLTARLIDADFSRIQFTPDLMPSDVLGTTVFNMKTNGFDFHQGP 107

Query: 107 ---DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
              D++ +DEI+R     +  L+  ME+ Q+ +   +G + R  ++    +T++A    V
Sbjct: 108 IFADIVLVDEINRAPAKTQAALFEVMEERQVSI---DGTTHRMGEL----YTILATQNPV 160

Query: 164 ---GLLTNPLQ--DRFGIPIRLNFYEIEDLKTIVQR 194
              G    P    DRF + I +++  +E+   I++R
Sbjct: 161 EQEGTYKLPEAQLDRFLMKITMDYPSLEEEVNILER 196


>gi|209877196|ref|XP_002140040.1| replication factor C, subunit 4 [Cryptosporidium muris RN66]
 gi|209555646|gb|EEA05691.1| replication factor C, subunit 4, putative [Cryptosporidium muris
          RN66]
          Length = 335

 Score = 39.7 bits (91), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 7/64 (10%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN- 81
          RPR + +   Q E    LK  +E        + H+LF GPPG GKT+    + REL  N 
Sbjct: 15 RPRQIADIYHQTEVVKMLKNVLEFGN-----MPHLLFYGPPGTGKTSAILALCRELFGND 69

Query: 82 -FRS 84
           FR+
Sbjct: 70 EFRN 73


>gi|194222681|ref|XP_001498117.2| PREDICTED: similar to Replication factor C subunit 4 (Replication
          factor C 37 kDa subunit) (RF-C 37 kDa subunit) (RFC37)
          (Activator 1 37 kDa subunit) (A1 37 kDa subunit) [Equus
          caballus]
          Length = 364

 Score = 39.7 bits (91), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+ ++E   Q E  + LK  +E A      L ++LF GPPG GKT+     AREL
Sbjct: 45 RPKCVDEVAFQEEVVAVLKKSLEGAD-----LPNLLFYGPPGTGKTSTILAAAREL 95


>gi|182684524|ref|YP_001836271.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae CGSP14]
 gi|221232330|ref|YP_002511483.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus
           pneumoniae ATCC 700669]
 gi|238691178|sp|B2IR87|CLPX_STRPS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|254763866|sp|B8ZLT1|CLPX_STRPJ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|182629858|gb|ACB90806.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae CGSP14]
 gi|220674791|emb|CAR69364.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus
           pneumoniae ATCC 700669]
          Length = 410

 Score = 39.7 bits (91), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +A+ L V F       + +AG    D+  +L  L        
Sbjct: 114 NILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNI 173

Query: 104 --EDRDVLFIDEIHRLS 118
              +R ++++DEI +++
Sbjct: 174 ERAERGIIYVDEIDKIA 190


>gi|149200008|ref|ZP_01877034.1| probable cell division protein FtsH [Lentisphaera araneosa
           HTCC2155]
 gi|149136881|gb|EDM25308.1| probable cell division protein FtsH [Lentisphaera araneosa
           HTCC2155]
          Length = 693

 Score = 39.7 bits (91), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
            L VGPPG GKT LA+ +A E GV F S SG    +   G  A+ + +L ++       +
Sbjct: 221 CLMVGPPGTGKTLLARAIAGEAGVPFFSMSGSDFVEMFVGVGASRVRDLFEQAKKHQPCI 280

Query: 109 LFIDEI 114
           LFIDEI
Sbjct: 281 LFIDEI 286


>gi|91081693|ref|XP_970788.1| PREDICTED: similar to spermatogenesis associated 5 [Tribolium
           castaneum]
          Length = 696

 Score = 39.7 bits (91), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 17/32 (53%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG  KT +A+ +A E G+NF S  GP
Sbjct: 473 VLMFGPPGCSKTMIAKALATESGLNFLSIKGP 504


>gi|61651808|ref|NP_001013344.1| replication factor C subunit 2 [Danio rerio]
 gi|60477744|gb|AAH90779.1| Zgc:110810 [Danio rerio]
 gi|182890088|gb|AAI64018.1| Zgc:110810 protein [Danio rerio]
          Length = 349

 Score = 39.7 bits (91), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 5/60 (8%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          +   RP  L E  G  E  S L+VF     AR   + +++  GPPG GKTT    +AR L
Sbjct: 34 VEKYRPLKLNEIVGNEETVSRLEVF-----AREGNVPNIIIAGPPGTGKTTSILCLARAL 88


>gi|332073906|gb|EGI84384.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae GA41301]
          Length = 410

 Score = 39.7 bits (91), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +A+ L V F       + +AG    D+  +L  L        
Sbjct: 114 NILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNI 173

Query: 104 --EDRDVLFIDEIHRLS 118
              +R ++++DEI +++
Sbjct: 174 ERAERGIIYVDEIDKIA 190


>gi|329768246|ref|ZP_08259747.1| hypothetical protein HMPREF0428_01444 [Gemella haemolysans M341]
 gi|328837445|gb|EGF87074.1| hypothetical protein HMPREF0428_01444 [Gemella haemolysans M341]
          Length = 668

 Score = 39.7 bits (91), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 93/222 (41%), Gaps = 42/222 (18%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL  GPPG GKT LA+ VA E  V F S SG       V   A  +  L    E     +
Sbjct: 204 VLLEGPPGTGKTLLARAVAGEAKVPFFSISGSDFVEMFVGVGASRVRDLFKEAEKNAPCI 263

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN-----LSRFT------LI 157
           +FIDEI  +               +    VG G   R   +N     +  F       +I
Sbjct: 264 IFIDEIDAVG-------------RKRGSGVGGGNDEREQTLNQLLVEMDGFDGEKGIIVI 310

Query: 158 AATTRVGLLTNPLQ--DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRS 215
           AAT R  +L N L+   RF   I+++  +++  + I++  AK   LA       E+   +
Sbjct: 311 AATNRADVLDNALRRPGRFDRQIKVSTPDVKGREAILKVHAKNKPLA----KGVELRSLA 366

Query: 216 RGTPRIAGRLLRRVRDFAEVAHAK----TITREIADAALLRL 253
             TP  +G  L  + + A +  A+    +I +E  D A+ R+
Sbjct: 367 EKTPGFSGADLANILNEAALLAARENKSSIDKEDLDEAMDRV 408


>gi|313903079|ref|ZP_07836473.1| Sigma 54 interacting domain protein [Thermaerobacter subterraneus
           DSM 13965]
 gi|313466581|gb|EFR62101.1| Sigma 54 interacting domain protein [Thermaerobacter subterraneus
           DSM 13965]
          Length = 563

 Score = 39.7 bits (91), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 5/66 (7%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  E+  GQ E    L+  +     +     HVL  GPPG+GKT  A++V  E   N 
Sbjct: 64  RPQRFEDIVGQEEGLRALRAALCGPNPQ-----HVLIYGPPGVGKTAAARLVLEEAKRNP 118

Query: 83  RSTSGP 88
           RS   P
Sbjct: 119 RSPFRP 124


>gi|290969236|ref|ZP_06560761.1| ATP-dependent metallopeptidase HflB [Megasphaera genomosp. type_1
           str. 28L]
 gi|290780742|gb|EFD93345.1| ATP-dependent metallopeptidase HflB [Megasphaera genomosp. type_1
           str. 28L]
          Length = 646

 Score = 39.7 bits (91), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 7/69 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78
           + ++  G+ EA   L   +E  +   +  D        VL  GPPG GKT LA+ VA E 
Sbjct: 153 SFKDVAGEDEAKEELSELVEFLRNPGKYNDIGAKIPKGVLLFGPPGTGKTLLARAVAGEA 212

Query: 79  GVNFRSTSG 87
           GV F S SG
Sbjct: 213 GVPFFSISG 221


>gi|288958757|ref|YP_003449098.1| ATP-dependent Clp protease ATP-binding subunit [Azospirillum sp.
           B510]
 gi|288911065|dbj|BAI72554.1| ATP-dependent Clp protease ATP-binding subunit [Azospirillum sp.
           B510]
          Length = 420

 Score = 39.7 bits (91), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L +GP G GKT LAQ +AR + V F       + +AG +   + N+         
Sbjct: 110 AKSNILLIGPTGCGKTLLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 169

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDE+ ++S
Sbjct: 170 YNVERAQRGIVYIDEVDKIS 189


>gi|282850015|ref|ZP_06259397.1| ATP-dependent metallopeptidase HflB [Veillonella parvula ATCC
           17745]
 gi|294793390|ref|ZP_06758535.1| cell division protein FtsH [Veillonella sp. 6_1_27]
 gi|282580204|gb|EFB85605.1| ATP-dependent metallopeptidase HflB [Veillonella parvula ATCC
           17745]
 gi|294455821|gb|EFG24186.1| cell division protein FtsH [Veillonella sp. 6_1_27]
          Length = 642

 Score = 39.7 bits (91), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL  GPPG GKT LA+ VA E GV F + SG       V   A  +  L T  +     +
Sbjct: 190 VLLAGPPGTGKTLLAKAVAGEAGVPFFTISGSDFVEMFVGVGASRVRDLFTQAKKNAPCI 249

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 250 IFIDEI 255


>gi|270293656|ref|ZP_06199858.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275123|gb|EFA20983.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 746

 Score = 39.7 bits (91), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 6/73 (8%)

Query: 14  QEDADISL--LRPRTLEEFTGQVEACSNLKVFIEAAKA----RAEALDHVLFVGPPGLGK 67
           +ED   +L  L  R      GQ EA   +   ++ +KA      + L  +LFVGP G+GK
Sbjct: 440 KEDDTTALESLHERISSRIYGQEEAVRQVVEAVQMSKAGLLDENKPLASLLFVGPTGVGK 499

Query: 68  TTLAQVVARELGV 80
           T +A+V+A ELG+
Sbjct: 500 TEVAKVLAAELGI 512


>gi|297741990|emb|CBI33777.3| unnamed protein product [Vitis vinifera]
          Length = 235

 Score = 39.7 bits (91), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 9/70 (12%)

Query: 54  LDHVLFVGPPGLGKTTLAQVVARELG-----VNFRS--TSGPVIAKAGDLAALLTNLEDR 106
           L  +L  GPPGLGKTTLA V A+  G     +N     +S  + AK  D+  + + + D 
Sbjct: 28  LQILLLCGPPGLGKTTLAHVAAKHCGYRVVEINASDDRSSSTIEAKILDVVQMNSVMADS 87

Query: 107 --DVLFIDEI 114
             + L IDEI
Sbjct: 88  KPNCLVIDEI 97


>gi|262404274|ref|ZP_06080829.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio sp.
           RC586]
 gi|262349306|gb|EEY98444.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio sp.
           RC586]
          Length = 426

 Score = 39.7 bits (91), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LA+ +AR L V F       + +AG +   + N+            
Sbjct: 116 NILLIGPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 175

Query: 104 --EDRDVLFIDEIHRLS 118
              +R +++IDEI ++S
Sbjct: 176 AKAERGIVYIDEIDKIS 192


>gi|298230526|ref|ZP_06964207.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           pneumoniae str. Canada MDR_19F]
 gi|298255218|ref|ZP_06978804.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           pneumoniae str. Canada MDR_19A]
 gi|298503307|ref|YP_003725247.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae TCH8431/19A]
 gi|298238902|gb|ADI70033.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae TCH8431/19A]
          Length = 410

 Score = 39.7 bits (91), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +A+ L V F       + +AG    D+  +L  L        
Sbjct: 114 NILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQVADFNI 173

Query: 104 --EDRDVLFIDEIHRLS 118
              +R ++++DEI +++
Sbjct: 174 ERAERGIIYVDEIDKIA 190


>gi|254488366|ref|ZP_05101571.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Roseobacter
           sp. GAI101]
 gi|214045235|gb|EEB85873.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Roseobacter
           sp. GAI101]
          Length = 421

 Score = 39.7 bits (91), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+         
Sbjct: 110 AKSNILLIGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSSE 169

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDE+ +++
Sbjct: 170 YNVERAQRGIVYIDEVDKIT 189


>gi|213513069|ref|NP_001133845.1| katanin p60 ATPase-containing subunit A1 [Salmo salar]
 gi|238690595|sp|B5X3X5|KTNA1_SALSA RecName: Full=Katanin p60 ATPase-containing subunit A1;
           Short=Katanin p60 subunit A1; AltName: Full=p60 katanin
 gi|209155548|gb|ACI34006.1| Katanin p60 ATPase-containing subunit [Salmo salar]
          Length = 486

 Score = 39.7 bits (91), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 94/232 (40%), Gaps = 40/232 (17%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108
           VL VGPPG GKT LA+ VA E    F + S   +     G+   L      +        
Sbjct: 240 VLMVGPPGTGKTLLAKAVATECRTTFFNVSSSTLTSKYRGESEKLVRILFEMARFYAPTT 299

Query: 109 LFIDEIHRLSI---IVEEILYPAMEDFQLDLMVG-EGPSARSVKINLSRFTLIAATTRVG 164
           +FIDEI  +       EE  + A    + +L+V  +G    S   + S+  ++ A T   
Sbjct: 300 IFIDEIDSMCSRRGTSEE--HEASRRVKAELLVQMDGVGGASDNEDPSKMVMVLAATNFP 357

Query: 165 L-----LTNPLQDRFGIP----------IRLNFYEIE-----DLKTIVQRGAKLTGLAVT 204
                 L   L+ R  IP          +R+N  E+E     D+  I ++    +G  +T
Sbjct: 358 WDIDEALRRRLEKRIYIPLPSAKGRVELLRINLKELELANDVDMAKIAEQSEGYSGADIT 417

Query: 205 D--EAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
           +    A  +AMR     RI G     +R+ +        T E  +++L +++
Sbjct: 418 NVCRDASLMAMRR----RIEGLTPEEIRNISRAEMHMPTTMEDFESSLKKVS 465


>gi|195453410|ref|XP_002073776.1| GK14289 [Drosophila willistoni]
 gi|194169861|gb|EDW84762.1| GK14289 [Drosophila willistoni]
          Length = 574

 Score = 39.7 bits (91), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108
           VL VGPPG GKT LA+ VA E G  F + S   +     G+   +      +        
Sbjct: 331 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSATLTSKYRGESEKMVRLLFEMARFYAPST 390

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 391 IFIDEIDSL 399


>gi|195343587|ref|XP_002038377.1| GM10656 [Drosophila sechellia]
 gi|194133398|gb|EDW54914.1| GM10656 [Drosophila sechellia]
          Length = 572

 Score = 39.7 bits (91), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108
           VL VGPPG GKT LA+ VA E G  F + S   +     G+   +      +        
Sbjct: 329 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSATLTSKYRGESEKMVRLLFEMARFYAPST 388

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 389 IFIDEIDSL 397


>gi|160886339|ref|ZP_02067342.1| hypothetical protein BACOVA_04349 [Bacteroides ovatus ATCC 8483]
 gi|237723209|ref|ZP_04553690.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. 2_2_4]
 gi|156108224|gb|EDO09969.1| hypothetical protein BACOVA_04349 [Bacteroides ovatus ATCC 8483]
 gi|229447731|gb|EEO53522.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. 2_2_4]
          Length = 621

 Score = 39.7 bits (91), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 71/316 (22%), Positives = 111/316 (35%), Gaps = 64/316 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP T E   GQ    + LK  I   K     L H  LF GP G+GKTT A++ A+ +   
Sbjct: 12  RPSTFESVVGQRALTTTLKNAIATQK-----LAHAYLFCGPRGVGKTTCARIFAKTINCM 66

Query: 82  FRSTSGPVIAKAGDLAAL----LTNLEDRDVLFIDEIHRLSIIVEEILYP---------- 127
             +  G    +     A       N+ + D    + +  +  +VE++  P          
Sbjct: 67  TPTADGEACNQCESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYI 126

Query: 128 -------AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                  +   F   L   E P   ++         I ATT    +   +  R  I    
Sbjct: 127 IDEVHMLSASAFNAFLKTLEEPPRHAI--------FILATTEKHKILPTILSRCQI-YDF 177

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA--EVAHA 238
           N   +ED    +   A   G+    EA   IAM++ G  R A  +  +V  F    + + 
Sbjct: 178 NRISVEDTVNHLSYVASKEGITAEPEALNVIAMKADGGMRDALSIFDQVVSFTGGNITYK 237

Query: 239 KTI-------------------TREIADAALLRLAIDKMGFDQLDLRYLTMIARNF---- 275
             I                     +++DA LL   I   GFD     ++T ++ +F    
Sbjct: 238 SVIDNLNVLDYEYYFRLTDCFLENKVSDALLLFNDILNKGFD--GSHFITGLSSHFRDLL 295

Query: 276 -GGGPVGIETISAGLS 290
            G  PV +  +  G S
Sbjct: 296 VGKDPVTLPLLEVGAS 311


>gi|148993405|ref|ZP_01822922.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae SP9-BS68]
 gi|194397730|ref|YP_002038201.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           pneumoniae G54]
 gi|238690843|sp|B5E6L2|CLPX_STRP4 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|147927960|gb|EDK78980.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae SP9-BS68]
 gi|194357397|gb|ACF55845.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae G54]
          Length = 410

 Score = 39.7 bits (91), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLT--------NL 103
           ++L +GP G GKT LAQ +A+ L V F       + +AG    D+  +L         N+
Sbjct: 114 NILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQVADFNI 173

Query: 104 E--DRDVLFIDEIHRLS 118
           E  +R ++++DEI +++
Sbjct: 174 ERAERGIIYVDEIDKIA 190


>gi|126741245|ref|ZP_01756924.1| ATP-dependent protease ATP-binding subunit [Roseobacter sp.
           SK209-2-6]
 gi|126717650|gb|EBA14373.1| ATP-dependent protease ATP-binding subunit [Roseobacter sp.
           SK209-2-6]
          Length = 422

 Score = 39.7 bits (91), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+         
Sbjct: 111 AKSNILLIGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASE 170

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDE+ +++
Sbjct: 171 YNVERAQRGIVYIDEVDKIT 190


>gi|119178672|ref|XP_001240981.1| hypothetical protein CIMG_08144 [Coccidioides immitis RS]
          Length = 1063

 Score = 39.7 bits (91), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 76/193 (39%), Gaps = 38/193 (19%)

Query: 43  FIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA---- 97
           FI   K R      +L FVGPPG+GKT++ + +AR L   +   S   +    ++     
Sbjct: 554 FIAVGKLRGTVEGKILCFVGPPGVGKTSIGKSIARALNRQYYRFSVGGLTDVAEIKGHRR 613

Query: 98  ------------ALLTNLEDRDVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLM 137
                       AL     +  ++ IDE+ ++        S  + E+L P      LD  
Sbjct: 614 TYVGALPGRIIQALKKCQTENPLILIDEVDKIGRGHQGDPSSALLELLDPEQNSSFLDHY 673

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR--- 194
           +        V ++LS+   +        +  PL DR  I I L+ Y  ++   I +R   
Sbjct: 674 M-------DVPVDLSKVLFVCTANMTDTIPRPLLDRMEI-IELSGYVADEKMAIAERYLA 725

Query: 195 --GAKLTGLAVTD 205
               +L+GL   D
Sbjct: 726 PAAKELSGLKEVD 738


>gi|2462109|emb|CAA72104.1| stage V sporulation protein K [Bacillus cereus ATCC 10987]
          Length = 598

 Score = 39.7 bits (91), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 71/172 (41%), Gaps = 35/172 (20%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPV------------IAKAGDLAALLTNL 103
           + +F G PG GKTT+A++VA+ L      +SG +            + + G     + + 
Sbjct: 325 NFIFTGNPGTGKTTIARLVAKYLKALGYLSSGHLVEVDRARLVAQYVGQTGPKTQAVIDS 384

Query: 104 EDRDVLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLSRFT 155
               VLFIDE + L+   E        + L   MED + DL+V         K  +  F 
Sbjct: 385 AKGGVLFIDEAYSLARGGENDFGKEAIDTLVKGMEDLREDLVV----ILAGYKDEMDDF- 439

Query: 156 LIAATTRVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDE 206
                    L TNP LQ RF   I    Y  E+L  I ++  +  G  + D+
Sbjct: 440 ---------LKTNPGLQSRFNNHIDFPDYTSEELFMISEKIVESEGFTIADD 482


>gi|150016210|ref|YP_001308464.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium
           beijerinckii NCIMB 8052]
 gi|189082489|sp|A6LT28|CLPX_CLOB8 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|149902675|gb|ABR33508.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           beijerinckii NCIMB 8052]
          Length = 429

 Score = 39.7 bits (91), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +AR L V F       + +AG    D+  +L  L        
Sbjct: 110 NILLLGPTGSGKTLLAQTLARFLNVPFAIADATTLTEAGYVGEDVENILLKLIQNADYDV 169

Query: 104 --EDRDVLFIDEIHRLS 118
              +R +++IDEI +++
Sbjct: 170 EKAERGIIYIDEIDKIA 186


>gi|15595976|ref|NP_249470.1| ATP-dependent protease [Pseudomonas aeruginosa PAO1]
 gi|107100240|ref|ZP_01364158.1| hypothetical protein PaerPA_01001263 [Pseudomonas aeruginosa PACS2]
 gi|218893278|ref|YP_002442147.1| putative ATP-dependent protease [Pseudomonas aeruginosa LESB58]
 gi|254239140|ref|ZP_04932463.1| hypothetical protein PACG_05325 [Pseudomonas aeruginosa C3719]
 gi|9946668|gb|AAG04168.1|AE004512_11 probable ATP-dependent protease [Pseudomonas aeruginosa PAO1]
 gi|126171071|gb|EAZ56582.1| hypothetical protein PACG_05325 [Pseudomonas aeruginosa C3719]
 gi|218773506|emb|CAW29318.1| probable ATP-dependent protease [Pseudomonas aeruginosa LESB58]
          Length = 799

 Score = 39.7 bits (91), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 71/166 (42%), Gaps = 40/166 (24%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           VL VGPPG+GKT++ + +A  LG  F R + G +  +A              G L   L 
Sbjct: 379 VLLVGPPGVGKTSIGKSIAESLGRPFYRFSVGGMRDEAEIKGHRRTYIGALPGKLVQALK 438

Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAME----DFQLDLMVGEGPSARSVK 148
            +E  + V+ +DEI +L    +        E L P       D  LDL           +
Sbjct: 439 EVEVMNPVIMLDEIDKLGASYQGDPASALLETLDPEQNVEFLDHYLDL-----------R 487

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           ++LS+   +     +  +  PL DR  + IRL+ Y  E+   I +R
Sbjct: 488 LDLSKVLFVCTANTLDSIPGPLLDRMEV-IRLSGYISEEKLAIAKR 532


>gi|15641923|ref|NP_231555.1| ATP-dependent protease ATP-binding subunit ClpX [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|121727847|ref|ZP_01680914.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae V52]
 gi|147674941|ref|YP_001217454.1| ATP-dependent protease ATP-binding subunit ClpX [Vibrio cholerae
           O395]
 gi|153217637|ref|ZP_01951318.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae 1587]
 gi|227082051|ref|YP_002810602.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae M66-2]
 gi|229507983|ref|ZP_04397488.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           cholerae BX 330286]
 gi|229511780|ref|ZP_04401259.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           cholerae B33]
 gi|229515307|ref|ZP_04404767.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           cholerae TMA 21]
 gi|229518917|ref|ZP_04408360.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           cholerae RC9]
 gi|229523941|ref|ZP_04413346.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           cholerae bv. albensis VL426]
 gi|229529053|ref|ZP_04418443.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           cholerae 12129(1)]
 gi|229607529|ref|YP_002878177.1| ATP-dependent protease ATP-binding subunit ClpX [Vibrio cholerae
           MJ-1236]
 gi|254286857|ref|ZP_04961809.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae AM-19226]
 gi|254849009|ref|ZP_05238359.1| ATP-dependent protease ATP-binding subunit [Vibrio cholerae MO10]
 gi|255745320|ref|ZP_05419269.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio cholera
           CIRS 101]
 gi|261210562|ref|ZP_05924855.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio sp.
           RC341]
 gi|262156044|ref|ZP_06029164.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           cholerae INDRE 91/1]
 gi|262167883|ref|ZP_06035583.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           cholerae RC27]
 gi|297579439|ref|ZP_06941367.1| ATP-dependent protease ATP-binding subunit [Vibrio cholerae RC385]
 gi|298498041|ref|ZP_07007848.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae MAK 757]
 gi|21263486|sp|Q9KQS7|CLPX_VIBCH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|172047650|sp|A5F6Z1|CLPX_VIBC3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|254763872|sp|C3LNM5|CLPX_VIBCM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|9656457|gb|AAF95069.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae O1 biovar El Tor str. N16961]
 gi|121629883|gb|EAX62297.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae V52]
 gi|124113416|gb|EAY32236.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae 1587]
 gi|146316824|gb|ABQ21363.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae O395]
 gi|150423007|gb|EDN14956.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae AM-19226]
 gi|227009939|gb|ACP06151.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae M66-2]
 gi|227013819|gb|ACP10029.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae O395]
 gi|229332827|gb|EEN98313.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           cholerae 12129(1)]
 gi|229337522|gb|EEO02539.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           cholerae bv. albensis VL426]
 gi|229343606|gb|EEO08581.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           cholerae RC9]
 gi|229348012|gb|EEO12971.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           cholerae TMA 21]
 gi|229351745|gb|EEO16686.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           cholerae B33]
 gi|229355488|gb|EEO20409.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           cholerae BX 330286]
 gi|229370184|gb|ACQ60607.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           cholerae MJ-1236]
 gi|254844714|gb|EET23128.1| ATP-dependent protease ATP-binding subunit [Vibrio cholerae MO10]
 gi|255737150|gb|EET92546.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio cholera
           CIRS 101]
 gi|260840347|gb|EEX66918.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio sp.
           RC341]
 gi|262023610|gb|EEY42311.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           cholerae RC27]
 gi|262030222|gb|EEY48866.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           cholerae INDRE 91/1]
 gi|297537033|gb|EFH75866.1| ATP-dependent protease ATP-binding subunit [Vibrio cholerae RC385]
 gi|297542374|gb|EFH78424.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae MAK 757]
 gi|327484464|gb|AEA78871.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           cholerae LMA3894-4]
          Length = 426

 Score = 39.7 bits (91), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LA+ +AR L V F       + +AG +   + N+            
Sbjct: 116 NILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 175

Query: 104 --EDRDVLFIDEIHRLS 118
              +R +++IDEI ++S
Sbjct: 176 AKAERGIVYIDEIDKIS 192


>gi|329888406|ref|ZP_08267004.1| metalloprotease [Brevundimonas diminuta ATCC 11568]
 gi|328846962|gb|EGF96524.1| metalloprotease [Brevundimonas diminuta ATCC 11568]
          Length = 650

 Score = 39.7 bits (91), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 20/30 (66%), Positives = 21/30 (70%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           L VGPPG GKT LA+ VA E GV F S SG
Sbjct: 202 LLVGPPGTGKTLLARAVAGEAGVPFFSISG 231


>gi|319651746|ref|ZP_08005872.1| ATP-dependent protease [Bacillus sp. 2_A_57_CT2]
 gi|317396565|gb|EFV77277.1| ATP-dependent protease [Bacillus sp. 2_A_57_CT2]
          Length = 555

 Score = 39.7 bits (91), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 12/90 (13%)

Query: 2   MDREGLLSRNVSQEDADISL-------LRPRTLEEFTGQVEACSNLKVFIEAAKARAEAL 54
           +DRE     +V ++   ISL       +RP +  +  GQ +   +LK  +     +    
Sbjct: 36  IDRESRKEMDVLKKMRSISLTEPLSEKVRPASFADIVGQEDGIKSLKAALCGPNPQ---- 91

Query: 55  DHVLFVGPPGLGKTTLAQVVARELGVNFRS 84
            HV+  GPPG+GKT  A++V  E   N +S
Sbjct: 92  -HVIIYGPPGVGKTAAARLVLEEAKKNAKS 120


>gi|312277431|gb|ADQ62088.1| ATP-dependent metalloprotease FtsH [Streptococcus thermophilus
           ND03]
          Length = 637

 Score = 39.7 bits (91), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLE--DRDV 108
           VL  GPPG GKT LA+ VA E  V F S SG       V   A  + +L  + +  +R +
Sbjct: 202 VLLEGPPGTGKTLLAKAVAGEADVPFFSISGSDFVEMFVGVGASRVRSLFEDAKKAERAI 261

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 262 IFIDEI 267


>gi|315037516|ref|YP_004031084.1| cell division protein [Lactobacillus amylovorus GRL 1112]
 gi|312275649|gb|ADQ58289.1| cell division protein [Lactobacillus amylovorus GRL 1112]
 gi|327182812|gb|AEA31259.1| cell division protein [Lactobacillus amylovorus GRL 1118]
          Length = 722

 Score = 39.7 bits (91), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 33/66 (50%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108
           VL  GPPG GKT LA+ VA E  V F S SG       V   A  +  L  N +     +
Sbjct: 229 VLLEGPPGTGKTLLARAVAGEANVPFYSISGSDFVEMFVGVGASRVRDLFNNAKKNAPSI 288

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 289 IFIDEI 294


>gi|331215451|ref|XP_003320406.1| hypothetical protein PGTG_01318 [Puccinia graminis f. sp. tritici
          CRL 75-36-700-3]
 gi|309299396|gb|EFP75987.1| hypothetical protein PGTG_01318 [Puccinia graminis f. sp. tritici
          CRL 75-36-700-3]
          Length = 382

 Score = 39.7 bits (91), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 5/60 (8%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          I   RP+++E   GQ E  + +   +  A  RA+ L H+LF GPPG GKT+    +AR+L
Sbjct: 34 IEKYRPKSIESVQGQ-EGTTKI---LSKALNRAD-LPHMLFYGPPGTGKTSTILALARDL 88


>gi|307127779|ref|YP_003879810.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae 670-6B]
 gi|306484841|gb|ADM91710.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae 670-6B]
          Length = 410

 Score = 39.7 bits (91), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +A+ L V F       + +AG    D+  +L  L        
Sbjct: 114 NILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNI 173

Query: 104 --EDRDVLFIDEIHRLS 118
              +R ++++DEI +++
Sbjct: 174 ERAERGIIYVDEIDKIA 190


>gi|302348724|ref|YP_003816362.1| Replication factor C large subunit [Acidilobus saccharovorans
          345-15]
 gi|302329136|gb|ADL19331.1| Replication factor C large subunit [Acidilobus saccharovorans
          345-15]
          Length = 484

 Score = 39.7 bits (91), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAA-KARAEALDHVLFVGPPGLGKTTLAQVVARE 77
          RP+++ +   Q EA S    ++EA  K R       L  GPPG+GKT+L +  A +
Sbjct: 14 RPKSVNDVVDQEEAKSQFLTWLEAWLKGRPPEKRAALLYGPPGVGKTSLVEAAAHD 69


>gi|301628751|ref|XP_002943510.1| PREDICTED: peroxisome assembly factor 2-like [Xenopus (Silurana)
          tropicalis]
          Length = 236

 Score = 39.7 bits (91), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 20/32 (62%)

Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
          VL  GPPG GKT LA+ VA E  + F S  GP
Sbjct: 8  VLLYGPPGTGKTLLAKAVATECAMTFLSVKGP 39


>gi|295087965|emb|CBK69488.1| DNA polymerase III, tau subunit [Bacteroides xylanisolvens XB1A]
          Length = 621

 Score = 39.7 bits (91), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 71/316 (22%), Positives = 111/316 (35%), Gaps = 64/316 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP T E   GQ    + LK  I   K     L H  LF GP G+GKTT A++ A+ +   
Sbjct: 12  RPSTFESVVGQRALTTTLKNAIATQK-----LAHAYLFCGPRGVGKTTCARIFAKTINCM 66

Query: 82  FRSTSGPVIAKAGDLAAL----LTNLEDRDVLFIDEIHRLSIIVEEILYP---------- 127
             +  G    +     A       N+ + D    + +  +  +VE++  P          
Sbjct: 67  TPTADGEACNQCESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYI 126

Query: 128 -------AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                  +   F   L   E P   ++         I ATT    +   +  R  I    
Sbjct: 127 IDEVHMLSASAFNAFLKTLEEPPRHAI--------FILATTEKHKILPTILSRCQI-YDF 177

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA--EVAHA 238
           N   +ED    +   A   G+    EA   IAM++ G  R A  +  +V  F    + + 
Sbjct: 178 NRISVEDTVNHLSYVASKEGITAEPEALNVIAMKADGGMRDALSIFDQVVSFTGGNITYK 237

Query: 239 KTI-------------------TREIADAALLRLAIDKMGFDQLDLRYLTMIARNF---- 275
             I                     +++DA LL   I   GFD     ++T ++ +F    
Sbjct: 238 SVIDNLNVLDYEYYFRLTDCFLENKVSDALLLFNDILNKGFD--GSHFITGLSSHFRDLL 295

Query: 276 -GGGPVGIETISAGLS 290
            G  PV +  +  G S
Sbjct: 296 VGKDPVTLPLLEVGAS 311


>gi|289168392|ref|YP_003446661.1| ATP-dependent Clp protease ATP-binding subunit clpX [Streptococcus
           mitis B6]
 gi|288907959|emb|CBJ22799.1| ATP-dependent Clp protease ATP-binding subunit clpX [Streptococcus
           mitis B6]
          Length = 410

 Score = 39.7 bits (91), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +A+ L V F       + +AG    D+  +L  L        
Sbjct: 114 NILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNI 173

Query: 104 --EDRDVLFIDEIHRLS 118
              +R ++++DEI +++
Sbjct: 174 ERAERGIIYVDEIDKIA 190


>gi|301095569|ref|XP_002896884.1| chromosome transmission fidelity protein, putative [Phytophthora
           infestans T30-4]
 gi|262108531|gb|EEY66583.1| chromosome transmission fidelity protein, putative [Phytophthora
           infestans T30-4]
          Length = 881

 Score = 39.7 bits (91), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 19/39 (48%), Positives = 22/39 (56%), Gaps = 6/39 (15%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD 95
           +L  GPPG GKTTLA +VAR  G N      P+   A D
Sbjct: 305 ILICGPPGAGKTTLANIVARHAGYN------PIEVNASD 337


>gi|260773193|ref|ZP_05882109.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           metschnikovii CIP 69.14]
 gi|260612332|gb|EEX37535.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           metschnikovii CIP 69.14]
          Length = 426

 Score = 39.7 bits (91), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LA+ +AR L V F       + +AG +   + N+            
Sbjct: 116 NILLIGPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 175

Query: 104 --EDRDVLFIDEIHRLS 118
              +R +++IDEI ++S
Sbjct: 176 AKAERGIVYIDEIDKIS 192


>gi|256084196|ref|XP_002578317.1| AAA family ATPase [Schistosoma mansoni]
 gi|238663686|emb|CAZ34555.1| AAA family ATPase, putative [Schistosoma mansoni]
          Length = 691

 Score = 39.7 bits (91), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 16/32 (50%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT +A+ ++ + G+NF S  GP
Sbjct: 478 VLLEGPPGCGKTLVAKALSNQAGLNFLSVKGP 509


>gi|254463915|ref|ZP_05077326.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Rhodobacterales bacterium Y4I]
 gi|206684823|gb|EDZ45305.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Rhodobacterales bacterium Y4I]
          Length = 422

 Score = 39.7 bits (91), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+         
Sbjct: 111 AKSNILLIGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSSE 170

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDE+ +++
Sbjct: 171 YNVERAQRGIVYIDEVDKIT 190


>gi|195497255|ref|XP_002096023.1| GE25304 [Drosophila yakuba]
 gi|194182124|gb|EDW95735.1| GE25304 [Drosophila yakuba]
          Length = 572

 Score = 39.7 bits (91), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108
           VL VGPPG GKT LA+ VA E G  F + S   +     G+   +      +        
Sbjct: 329 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSATLTSKYRGESEKMVRLLFEMARFYAPST 388

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 389 IFIDEIDSL 397


>gi|170288047|ref|YP_001738285.1| DNA polymerase III, subunits gamma and tau [Thermotoga sp. RQ2]
 gi|170175550|gb|ACB08602.1| DNA polymerase III, subunits gamma and tau [Thermotoga sp. RQ2]
          Length = 478

 Score = 39.7 bits (91), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 93/237 (39%), Gaps = 43/237 (18%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  E   Q     ++K  I  A  +       +F GP G GKTTLA+++A+ L    
Sbjct: 9   RPKTFSEVVDQ----DHVKKAIIGAIQKNSVAHGYIFAGPRGTGKTTLARILAKSLNCEN 64

Query: 83  RSTSGPV----IAKAGDLAALLTNLE-----DRDVLFIDEIHRLS--------------I 119
           R    P       +  D    +  +E     +R    IDEI R+                
Sbjct: 65  RKGVEPCNSCRACREIDEGTFMDVIELDAASNRG---IDEIRRIRDAVGYRPMEGKYKVY 121

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           I++E+     E F   L   E P +  V         + ATT +  +   +  R  +   
Sbjct: 122 IIDEVHMLTKEAFNALLKTLEEPPSHVV--------FVLATTNLEKVPPTIISRCQV--- 170

Query: 180 LNFYEIED--LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
             F  I D  ++  +Q  A+  G+ +  EA   IA R+ G  R A  +L +V  F+E
Sbjct: 171 FEFRNIPDELIEKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWKFSE 227


>gi|156383785|ref|XP_001633013.1| predicted protein [Nematostella vectensis]
 gi|156220077|gb|EDO40950.1| predicted protein [Nematostella vectensis]
          Length = 357

 Score = 39.7 bits (91), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+ +++   Q E    LK  +E A      L ++LF GPPG GKT+    VAREL
Sbjct: 38 RPKCVDDVAQQEEVVMVLKKSLEGAD-----LPNLLFYGPPGTGKTSTILAVAREL 88


>gi|148238400|ref|YP_001223787.1| ATP-dependent protease ATP-binding subunit [Synechococcus sp. WH
           7803]
 gi|166215216|sp|A5GHS5|CLPX_SYNPW RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|147846939|emb|CAK22490.1| ATP-dependent Clp protease ATP-binding subunit, ClpX [Synechococcus
           sp. WH 7803]
          Length = 451

 Score = 39.7 bits (91), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 65/151 (43%), Gaps = 32/151 (21%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALL----------T 101
           ++L +GP G GKT LAQ +A  L V F       + +AG    D+  +L           
Sbjct: 138 NILLIGPTGCGKTLLAQTLAEMLDVPFAVADATTLTEAGYVGEDVENILLRLLQKADMDV 197

Query: 102 NLEDRDVLFIDEIHRLS------IIVEEILYPAMEDFQLDLMVG-----------EGPSA 144
           +L  R +++IDEI +++       I  ++    ++   L ++ G           + P  
Sbjct: 198 DLAQRGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPYQ 257

Query: 145 RSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
             ++I+ S+   I     VG L + +Q R G
Sbjct: 258 DCIQIDTSQILFICGGAFVG-LDDVVQKRMG 287


>gi|146338365|ref|YP_001203413.1| putative vesicle-fusing ATPase [Bradyrhizobium sp. ORS278]
 gi|146191171|emb|CAL75176.1| putative Vesicle-fusing ATPase [Bradyrhizobium sp. ORS278]
          Length = 714

 Score = 39.7 bits (91), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAKA-GDLAALLTNLEDR------DV 108
           +LF GPPG GKT LA+ +A E   +F   SGP ++AK  G+  A L ++ ++       +
Sbjct: 221 ILFSGPPGTGKTLLARAIAYENKCSFFQISGPEIVAKHYGESEAQLRSVFEQARAKAPSI 280

Query: 109 LFIDEI 114
           +F+DE+
Sbjct: 281 VFLDEL 286



 Score = 38.5 bits (88), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  G PG GKT LA+ +A E GVNF S  GP
Sbjct: 492 VLLHGAPGTGKTLLAKALATEAGVNFISVRGP 523


>gi|187920723|ref|YP_001889755.1| AAA ATPase central domain-containing protein [Burkholderia
           phytofirmans PsJN]
 gi|187719161|gb|ACD20384.1| AAA ATPase central domain protein [Burkholderia phytofirmans PsJN]
          Length = 634

 Score = 39.7 bits (91), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 18/35 (51%), Positives = 23/35 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA 91
           +L VG PG+GKT LAQ +A E G NF S +G   +
Sbjct: 226 ILMVGGPGVGKTRLAQALAGECGANFISITGSYFS 260


>gi|328876465|gb|EGG24828.1| peptidase S16 [Dictyostelium fasciculatum]
          Length = 1046

 Score = 39.7 bits (91), Expect = 0.62,   Method: Composition-based stats.
 Identities = 67/265 (25%), Positives = 99/265 (37%), Gaps = 47/265 (17%)

Query: 8   LSRNVSQEDA-DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGL 65
           L  NV+  D  DI  ++     +  G  +    +K FI   K R      + L VGPPG 
Sbjct: 553 LPWNVTTNDNFDIPSIKASLDRDHYGLDDIKEMIKTFIAVGKLRGSVGGKIILLVGPPGT 612

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLA----------------ALLTNLEDRDVL 109
           GKT++ + +A  L   F   S   I+   ++                 AL T      V+
Sbjct: 613 GKTSIGKSIATALDRQFYRFSVGGISDVAEIKGHRRTFVGAMPGKIIQALKTVKTSNPVI 672

Query: 110 FIDEIHRLS--------IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATT 161
            IDEI ++S          + E+L P      LD  +        +  +LS+   I    
Sbjct: 673 LIDEIDKISKGSHSDPFAALLEVLDPQQNKNFLDHYM-------DIPYDLSKVLFICTAN 725

Query: 162 RVGLLTNPLQDRFGIPIRLNFY-EIEDLKT----IVQRGAKLTG-----LAVTDEAA--- 208
               +  PL DR  + +RLN Y + E ++     IV      TG     L +T EA    
Sbjct: 726 LTHPIPAPLLDRMDV-MRLNGYIQAEQIEIANNYIVPSVKSETGIGDDKLMITKEAIKHL 784

Query: 209 CEIAMRSRGTPRIAGRLLRRVRDFA 233
           CE   R  G   +   + R  R  A
Sbjct: 785 CEYWCRESGVRNLKKMIERMFRKVA 809


>gi|317479380|ref|ZP_07938514.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Bacteroides
           sp. 4_1_36]
 gi|316904454|gb|EFV26274.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Bacteroides
           sp. 4_1_36]
          Length = 746

 Score = 39.7 bits (91), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 6/73 (8%)

Query: 14  QEDADISL--LRPRTLEEFTGQVEACSNLKVFIEAAKA----RAEALDHVLFVGPPGLGK 67
           +ED   +L  L  R      GQ EA   +   ++ +KA      + L  +LFVGP G+GK
Sbjct: 440 KEDDTTALESLHERISSRIYGQEEAVRQVVEAVQMSKAGLLDENKPLASLLFVGPTGVGK 499

Query: 68  TTLAQVVARELGV 80
           T +A+V+A ELG+
Sbjct: 500 TEVAKVLAAELGI 512


>gi|307102591|gb|EFN50862.1| hypothetical protein CHLNCDRAFT_28658 [Chlorella variabilis]
          Length = 187

 Score = 39.7 bits (91), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 21/32 (65%)

Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
          VL  GPPG GKT LA+ VA E  ++F S  GP
Sbjct: 43 VLLYGPPGTGKTLLAKAVATECSISFLSVKGP 74


>gi|305691181|gb|ADM65833.1| leaf rust resistance protein Lr10 [Triticum turgidum subsp.
           dicoccoides]
 gi|305691184|gb|ADM65835.1| leaf rust resistance protein Lr10 [Triticum turgidum subsp.
           dicoccoides]
          Length = 921

 Score = 39.7 bits (91), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 29/44 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALL 100
           V  VG  GLGKTTLA+ V  EL +NF   +   I+++ D+AA+L
Sbjct: 193 VSIVGCAGLGKTTLAKQVYDELRINFEYRAFVSISRSPDMAAIL 236


>gi|296536160|ref|ZP_06898288.1| ATP-dependent Clp protease ATP-binding subunit [Roseomonas
           cervicalis ATCC 49957]
 gi|296263531|gb|EFH10028.1| ATP-dependent Clp protease ATP-binding subunit [Roseomonas
           cervicalis ATCC 49957]
          Length = 418

 Score = 39.7 bits (91), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  +++ VGP G GKT LAQ +AR L V F       + +AG +   + N+         
Sbjct: 108 AKSNIMLVGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 167

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDE+ ++S
Sbjct: 168 YNVERAQRGIVYIDEVDKIS 187


>gi|293372713|ref|ZP_06619095.1| DNA polymerase III, subunit gamma and tau [Bacteroides ovatus SD
           CMC 3f]
 gi|292632522|gb|EFF51118.1| DNA polymerase III, subunit gamma and tau [Bacteroides ovatus SD
           CMC 3f]
          Length = 621

 Score = 39.7 bits (91), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 71/316 (22%), Positives = 111/316 (35%), Gaps = 64/316 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP T E   GQ    + LK  I   K     L H  LF GP G+GKTT A++ A+ +   
Sbjct: 12  RPSTFESVVGQRALTTTLKNAIATQK-----LAHAYLFCGPRGVGKTTCARIFAKTINCM 66

Query: 82  FRSTSGPVIAKAGDLAAL----LTNLEDRDVLFIDEIHRLSIIVEEILYP---------- 127
             +  G    +     A       N+ + D    + +  +  +VE++  P          
Sbjct: 67  TPTADGEACNQCESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYI 126

Query: 128 -------AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                  +   F   L   E P   ++         I ATT    +   +  R  I    
Sbjct: 127 IDEVHMLSASAFNAFLKTLEEPPRHAI--------FILATTEKHKILPTILSRCQI-YDF 177

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA--EVAHA 238
           N   +ED    +   A   G+    EA   IAM++ G  R A  +  +V  F    + + 
Sbjct: 178 NRISVEDTVNHLSYVASKEGITAEPEALNVIAMKADGGMRDALSIFDQVVSFTGGNITYK 237

Query: 239 KTI-------------------TREIADAALLRLAIDKMGFDQLDLRYLTMIARNF---- 275
             I                     +++DA LL   I   GFD     ++T ++ +F    
Sbjct: 238 SVIDNLNVLDYEYYFRLTDCFLENKVSDALLLFNDILNKGFD--GSHFITGLSSHFRDLL 295

Query: 276 -GGGPVGIETISAGLS 290
            G  PV +  +  G S
Sbjct: 296 VGKDPVTLPLLEVGAS 311


>gi|283768399|ref|ZP_06341311.1| ATP-dependent metallopeptidase HflB [Bulleidia extructa W1219]
 gi|283104791|gb|EFC06163.1| ATP-dependent metallopeptidase HflB [Bulleidia extructa W1219]
          Length = 625

 Score = 39.7 bits (91), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           +L VGPPG GKT LA+ VA E  V F S SG       V   A  +  L    +++   +
Sbjct: 208 ILLVGPPGTGKTMLAKAVAGESNVPFISISGSEFIEMFVGMGASKVRDLFKKAKEKAPCI 267

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 268 VFIDEI 273


>gi|260663745|ref|ZP_05864633.1| cell division protein FtsH [Lactobacillus fermentum 28-3-CHN]
 gi|260551796|gb|EEX24912.1| cell division protein FtsH [Lactobacillus fermentum 28-3-CHN]
          Length = 698

 Score = 39.7 bits (91), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           VL  GPPG GKT LA+ VA E GV F S SG    +   G  A+ + +L ++       +
Sbjct: 205 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKTAPSI 264

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 265 IFIDEI 270


>gi|254796847|ref|YP_003081684.1| DNA polymerase III, subunits gamma and tau [Neorickettsia risticii
           str. Illinois]
 gi|254590084|gb|ACT69446.1| DNA polymerase III, subunits gamma and tau [Neorickettsia risticii
           str. Illinois]
          Length = 403

 Score = 39.7 bits (91), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 52/117 (44%), Gaps = 12/117 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPR L E  GQ      L   + A+ AR E    VL  GP G GKTT A+ V   L  + 
Sbjct: 18  RPRLLNEIVGQ----DFLVKCLSASIARDEVAGAVLLSGPYGTGKTTTARAVTLSLLCSN 73

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDE-----IHRLSIIVEEILY-PAMEDFQ 133
           R    P +     L+ L  N    DVL ID      +  + +++E  LY P +  ++
Sbjct: 74  RMDVLPCLKCDSCLSVL--NGSHPDVLEIDAASNTGVEDVRMLIEGALYKPLLSKYK 128


>gi|253681026|ref|ZP_04861829.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           botulinum D str. 1873]
 gi|253562875|gb|EES92321.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           botulinum D str. 1873]
          Length = 431

 Score = 39.7 bits (91), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +AR L V F       + +AG    D+  +L  L        
Sbjct: 110 NILLLGPTGSGKTLLAQTLARLLNVPFAIADATTLTEAGYVGEDVENILLKLIQNADYDV 169

Query: 104 --EDRDVLFIDEIHRLS 118
              +R +++IDEI +++
Sbjct: 170 EKAERGIIYIDEIDKIA 186


>gi|168031129|ref|XP_001768074.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162680712|gb|EDQ67146.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 505

 Score = 39.7 bits (91), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLED------RDV 108
           VL  GPPG GKT LA+ VA E G  F + S   +A    G+   ++  L D         
Sbjct: 260 VLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRVLFDLARAYAPST 319

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 320 IFIDEIDSL 328


>gi|18398708|ref|NP_565435.1| AAA-type ATPase family protein [Arabidopsis thaliana]
 gi|15450828|gb|AAK96685.1| putative AAA-type ATPase [Arabidopsis thaliana]
 gi|20197813|gb|AAD15504.2| putative AAA-type ATPase [Arabidopsis thaliana]
 gi|20259834|gb|AAM13264.1| putative AAA-type ATPase [Arabidopsis thaliana]
 gi|330251663|gb|AEC06757.1| AAA-type ATPase-like protein [Arabidopsis thaliana]
          Length = 636

 Score = 39.7 bits (91), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 70/157 (44%), Gaps = 35/157 (22%)

Query: 39  NLKVFIEA-AKARAEALDH------VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA 91
           +LK  IE  A+A A    H      ++F GPPG GKT +A+ +AR+ G+++   +G  +A
Sbjct: 363 SLKTRIERLARATANTKSHKAPFRNMMFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVA 422

Query: 92  KAGDLAALLTNLED----------RDVLFIDE-----IHRLSIIVEEILYPAMEDFQLDL 136
             G  A  +T + +            +LFIDE       R S  + E    A+      L
Sbjct: 423 PLG--AQAVTKIHEIFDWAKKSNKGLLLFIDEADAFLCERNSTYMSEAQRSALN----AL 476

Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           +   G  +R +        L+ AT R G L + + DR
Sbjct: 477 LFRTGDQSRDI-------VLVLATNRPGDLDSAVTDR 506


>gi|74002396|ref|XP_853576.1| PREDICTED: similar to proteasome 26S ATPase subunit 6 [Canis
           familiaris]
          Length = 260

 Score = 39.7 bits (91), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 56/124 (45%), Gaps = 23/124 (18%)

Query: 8   LSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV--------L 58
           L  N+S ED  ++S        E  G  E    L+  IE      E    V        L
Sbjct: 118 LVYNMSHEDPGNVSY------SEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCL 171

Query: 59  FVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA-GDLAALLTNLED--RD----VLF 110
             GPPG GKT LA+ VA +L  NF +  S  ++ K  G+ A L+  + +  RD    ++F
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIF 231

Query: 111 IDEI 114
           +DEI
Sbjct: 232 MDEI 235


>gi|21226956|ref|NP_632878.1| cell division cycle protein 48-like protein [Methanosarcina mazei
           Go1]
 gi|20905268|gb|AAM30550.1| Cell division cycle protein 48 homolog [Methanosarcina mazei Go1]
          Length = 428

 Score = 39.7 bits (91), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--------AKAGDLAALLTNLEDRDV 108
           +LFVGPPG GKT++A+ ++ +L + F      +I        AK  D   LL    +  +
Sbjct: 213 LLFVGPPGTGKTSVARALSEQLSIPFVEVKLSMITDQYLGETAKNIDRVFLLAKKLNPCI 272

Query: 109 LFIDEI 114
           LFIDE+
Sbjct: 273 LFIDEL 278


>gi|429100|emb|CAA53625.1| Lon protease-like protein [Homo sapiens]
 gi|741362|prf||2007252A ATP-dependent lon protease
          Length = 937

 Score = 39.7 bits (91), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 87/207 (42%), Gaps = 33/207 (15%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLA 71
           S E+ D++  +    E+  G  +    +  FI  ++ R      +L F GPPG+GKT++A
Sbjct: 452 SNENLDLARAQAVLEEDHYGMEDVKKRILEFIAVSQLRGSTQGKILCFYGPPGVGKTSIA 511

Query: 72  QVVARELGVN-FRSTSGP--------------VIAKAGDLAALLTNLEDRD-VLFIDEIH 115
           + +AR L    FR + G               V A  G +   L   +  + ++ IDE+ 
Sbjct: 512 RSIARALNREYFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLILIDEVD 571

Query: 116 RL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           ++        S  + E+L P      LD  +        V ++LS+   I        + 
Sbjct: 572 KIGRGYQGDPSSALLELLDPEQNANFLDHYL-------DVPVDLSKVLFICTANVTDTIP 624

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQR 194
            PL+DR  + I ++ Y  ++   I +R
Sbjct: 625 EPLRDRMEM-INVSGYVAQEKLAIAER 650


>gi|15901412|ref|NP_346016.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           pneumoniae TIGR4]
 gi|15903470|ref|NP_359020.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           pneumoniae R6]
 gi|116517127|ref|YP_816859.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae D39]
 gi|148984921|ref|ZP_01818174.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae SP3-BS71]
 gi|148997363|ref|ZP_01824968.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae SP11-BS70]
 gi|149007515|ref|ZP_01831150.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae SP18-BS74]
 gi|149007878|ref|ZP_01831465.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae SP18-BS74]
 gi|149012698|ref|ZP_01833674.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae SP19-BS75]
 gi|149022039|ref|ZP_01836001.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae SP23-BS72]
 gi|168483552|ref|ZP_02708504.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae CDC1873-00]
 gi|168486832|ref|ZP_02711340.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae CDC1087-00]
 gi|168491537|ref|ZP_02715680.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae CDC0288-04]
 gi|168493474|ref|ZP_02717617.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae CDC3059-06]
 gi|168575233|ref|ZP_02721196.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae MLV-016]
 gi|225855011|ref|YP_002736523.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           pneumoniae JJA]
 gi|225857195|ref|YP_002738706.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           pneumoniae P1031]
 gi|225859326|ref|YP_002740836.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           pneumoniae 70585]
 gi|237650252|ref|ZP_04524504.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           pneumoniae CCRI 1974]
 gi|237820865|ref|ZP_04596710.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           pneumoniae CCRI 1974M2]
 gi|303260196|ref|ZP_07346168.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae SP-BS293]
 gi|303262587|ref|ZP_07348528.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae SP14-BS292]
 gi|303264989|ref|ZP_07350904.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae BS397]
 gi|303266452|ref|ZP_07352340.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae BS457]
 gi|303269034|ref|ZP_07354816.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae BS458]
 gi|307068212|ref|YP_003877178.1| ATP-dependent protease Clp, ATPase subunit [Streptococcus
           pneumoniae AP200]
 gi|54036857|sp|P63792|CLPX_STRR6 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|54040895|sp|P63791|CLPX_STRPN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|122278295|sp|Q04JH9|CLPX_STRP2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|254763865|sp|C1C8G0|CLPX_STRP7 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|254763868|sp|C1CFF2|CLPX_STRZJ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|254763869|sp|C1CLR8|CLPX_STRZP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|14973060|gb|AAK75656.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae TIGR4]
 gi|15459081|gb|AAL00231.1| ATP-dependent Clp protease ATP-binding subunit (class III
           heat-shock protein) [Streptococcus pneumoniae R6]
 gi|116077703|gb|ABJ55423.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae D39]
 gi|147756418|gb|EDK63459.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae SP11-BS70]
 gi|147760605|gb|EDK67579.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae SP18-BS74]
 gi|147760874|gb|EDK67844.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae SP18-BS74]
 gi|147763298|gb|EDK70236.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae SP19-BS75]
 gi|147922943|gb|EDK74059.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae SP3-BS71]
 gi|147929883|gb|EDK80872.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae SP23-BS72]
 gi|172043151|gb|EDT51197.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae CDC1873-00]
 gi|183570188|gb|EDT90716.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae CDC1087-00]
 gi|183574196|gb|EDT94724.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae CDC0288-04]
 gi|183576310|gb|EDT96838.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae CDC3059-06]
 gi|183578742|gb|EDT99270.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae MLV-016]
 gi|225722023|gb|ACO17877.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae 70585]
 gi|225723578|gb|ACO19431.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae JJA]
 gi|225725234|gb|ACO21086.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae P1031]
 gi|301794578|emb|CBW37022.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus
           pneumoniae INV104]
 gi|301800400|emb|CBW33031.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus
           pneumoniae OXC141]
 gi|301802287|emb|CBW35039.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus
           pneumoniae INV200]
 gi|302636304|gb|EFL66798.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae SP14-BS292]
 gi|302638693|gb|EFL69156.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae SP-BS293]
 gi|302641424|gb|EFL71789.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae BS458]
 gi|302644030|gb|EFL74289.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae BS457]
 gi|302645508|gb|EFL75740.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae BS397]
 gi|306409749|gb|ADM85176.1| ATP-dependent protease Clp, ATPase subunit [Streptococcus
           pneumoniae AP200]
 gi|332199613|gb|EGJ13688.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae GA41317]
 gi|332201010|gb|EGJ15081.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae GA47901]
          Length = 410

 Score = 39.7 bits (91), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +A+ L V F       + +AG    D+  +L  L        
Sbjct: 114 NILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQVADFNI 173

Query: 104 --EDRDVLFIDEIHRLS 118
              +R ++++DEI +++
Sbjct: 174 ERAERGIIYVDEIDKIA 190


>gi|67624401|ref|XP_668483.1| Ruv DNA-helicase-related protein [Cryptosporidium hominis TU502]
 gi|126653037|ref|XP_001388382.1| Ruv DNA-helicase-related protein [Cryptosporidium parvum Iowa II]
 gi|54659691|gb|EAL38257.1| Ruv DNA-helicase-related protein [Cryptosporidium hominis]
 gi|126117475|gb|EAZ51575.1| Ruv DNA-helicase-related protein [Cryptosporidium parvum Iowa II]
 gi|323508497|dbj|BAJ77142.1| cgd7_2090 [Cryptosporidium parvum]
 gi|323509765|dbj|BAJ77775.1| cgd7_2090 [Cryptosporidium parvum]
          Length = 457

 Score = 39.7 bits (91), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 28/48 (58%)

Query: 32 GQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
          GQ++A  +  V +   + +  A   VL  GPPG GKT +AQ +A ELG
Sbjct: 43 GQLQARESAGVVLSLIQNKKLAGKAVLLAGPPGTGKTAIAQAIAHELG 90


>gi|326934254|ref|XP_003213207.1| PREDICTED: lon protease homolog, mitochondrial-like [Meleagris
           gallopavo]
          Length = 815

 Score = 39.7 bits (91), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 88/209 (42%), Gaps = 33/209 (15%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTT 69
             S+E+ +++  +    E+  G  +    +  FI  ++ R      +L F GPPG+GKT+
Sbjct: 335 KCSEENLELTRAQAVLEEDHYGMDDVKKRILEFIAVSQLRGSTQGKILCFYGPPGVGKTS 394

Query: 70  LAQVVARELGVN-FRSTSG--------------PVIAKAGDLAALLTNLEDRD-VLFIDE 113
           +A+ +AR L    FR + G               V A  G +   L   +  + ++ IDE
Sbjct: 395 IARSIARALNREYFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLILIDE 454

Query: 114 IHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
           + ++        S  + E+L P      LD  +        V ++LS+   I        
Sbjct: 455 VDKIGRGYQGDPSSALLELLDPEQNSNFLDHYL-------DVPVDLSKVLFICTANVTET 507

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           +  PL+DR  + I ++ Y  E+   I +R
Sbjct: 508 IPEPLRDRMEV-INVSGYVAEEKLAIAER 535


>gi|324096504|gb|ADY17781.1| RE37382p [Drosophila melanogaster]
          Length = 554

 Score = 39.7 bits (91), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108
           VL VGPPG GKT LA+ VA E G  F + S   +     G+   +      +        
Sbjct: 311 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSATLTSKYRGESEKMVRLLFEMARFYAPST 370

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 371 IFIDEIDSL 379


>gi|319939271|ref|ZP_08013634.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus
           anginosus 1_2_62CV]
 gi|319811667|gb|EFW07943.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus
           anginosus 1_2_62CV]
          Length = 410

 Score = 39.7 bits (91), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +A+ L V F       + +AG    D+  +L  L        
Sbjct: 114 NILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNI 173

Query: 104 --EDRDVLFIDEIHRLS 118
              +R ++++DEI +++
Sbjct: 174 ERAERGIIYVDEIDKIA 190


>gi|313894617|ref|ZP_07828180.1| cell division protease FtsH [Veillonella sp. oral taxon 158 str.
           F0412]
 gi|313440807|gb|EFR59236.1| cell division protease FtsH [Veillonella sp. oral taxon 158 str.
           F0412]
          Length = 642

 Score = 39.7 bits (91), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL  GPPG GKT LA+ VA E GV F + SG       V   A  +  L T  +     +
Sbjct: 190 VLLAGPPGTGKTLLAKAVAGEAGVPFFTISGSDFVEMFVGVGASRVRDLFTQAKKNAPCI 249

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 250 IFIDEI 255


>gi|305691179|gb|ADM65832.1| leaf rust resistance protein Lr10 [Triticum turgidum subsp.
           dicoccoides]
          Length = 921

 Score = 39.7 bits (91), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 29/44 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALL 100
           V  VG  GLGKTTLA+ V  EL +NF   +   I+++ D+AA+L
Sbjct: 193 VSIVGCAGLGKTTLAKQVYDELRINFEYRAFVSISRSPDMAAIL 236


>gi|302387411|ref|YP_003823233.1| ATP-dependent metalloprotease FtsH [Clostridium saccharolyticum
           WM1]
 gi|302198039|gb|ADL05610.1| ATP-dependent metalloprotease FtsH [Clostridium saccharolyticum
           WM1]
          Length = 625

 Score = 39.7 bits (91), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 48/105 (45%), Gaps = 15/105 (14%)

Query: 25  RTLEEFTGQVEACSNLKVFIE-------AAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +T  +  GQ EA   LK  ++        A   A      L VGPPG GKT LA+ VA E
Sbjct: 175 KTFRDVAGQEEAKEALKEIVDFLHNPQKYADIGASLPKGALLVGPPGTGKTLLAKAVAGE 234

Query: 78  LGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEI 114
             V F S SG    +   G  AA + +L  +       ++FIDEI
Sbjct: 235 AHVPFFSISGSEFVEMFVGMGAAKVRDLFKQAGEKAPCIVFIDEI 279


>gi|283954556|ref|ZP_06372075.1| putative membrane bound ATPase [Campylobacter jejuni subsp. jejuni
           414]
 gi|283793960|gb|EFC32710.1| putative membrane bound ATPase [Campylobacter jejuni subsp. jejuni
           414]
          Length = 538

 Score = 39.7 bits (91), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL +GPPG+GKT +A+ VA E GV F   SG 
Sbjct: 188 VLMIGPPGVGKTLIAKAVAGEAGVPFFYQSGS 219


>gi|271968523|ref|YP_003342719.1| ATP-dependent protease ATP-binding subunit [Streptosporangium
           roseum DSM 43021]
 gi|270511698|gb|ACZ89976.1| ATP-dependent protease ATP-binding subunit [Streptosporangium
           roseum DSM 43021]
          Length = 426

 Score = 39.7 bits (91), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 31/130 (23%)

Query: 20  SLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEALD------------HVLFVGP 62
           SL +PR + EF      GQ +A   L V +     R ++ +            ++L +GP
Sbjct: 60  SLPKPREIYEFLDAYVIGQDQAKKALSVAVYNHYKRVQSGERGRDDGIELSKSNILLLGP 119

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDV------- 108
            G GKT LAQ +A+ L V F       + +AG +   + N+        D DV       
Sbjct: 120 TGSGKTLLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKKAETGI 179

Query: 109 LFIDEIHRLS 118
           ++IDE+ +++
Sbjct: 180 IYIDEVDKIA 189


>gi|289580410|ref|YP_003478876.1| ATPase AAA [Natrialba magadii ATCC 43099]
 gi|289529963|gb|ADD04314.1| AAA ATPase central domain protein [Natrialba magadii ATCC 43099]
          Length = 514

 Score = 39.7 bits (91), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 3/58 (5%)

Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           RP TL E  G  +A   LK   E A+   +  D V+  G PG+GKT+ A  +A +LG
Sbjct: 8  YRPTTLSEVRGNNKARDKLK---EWAETWDDHQDAVIVHGSPGVGKTSAAHALANDLG 62


>gi|170781896|ref|YP_001710228.1| ATP-dependent protease ATP-binding subunit ClpX [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|189082488|sp|B0RAS4|CLPX_CLAMS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|169156464|emb|CAQ01612.1| ATP dependent Clp Protease ATP binding subunit [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 426

 Score = 39.7 bits (91), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------ED 105
           A  ++L +GP G GKT LAQ +A+ L V F       + +AG +   + N+        D
Sbjct: 117 AKSNILLIGPTGCGKTYLAQTLAKRLNVPFAVADATALTEAGYVGEDVENILLKLIQAAD 176

Query: 106 RDV-------LFIDEIHRLS 118
            DV       ++IDE+ +++
Sbjct: 177 YDVKRAETGIIYIDEVDKIA 196


>gi|116794435|gb|ABK27142.1| unknown [Picea sitchensis]
          Length = 439

 Score = 39.7 bits (91), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 8/68 (11%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRS-TSGPVIAKA-GDLAALLTNLED--RD----VL 109
           L  GPPG GK+ LA+ VA E    F S +S  +++K  G+   L++NL    RD    ++
Sbjct: 170 LLYGPPGTGKSYLAKAVATEADSTFYSISSSDLVSKWMGESEKLVSNLFQMARDCAPSII 229

Query: 110 FIDEIHRL 117
           FIDEI  L
Sbjct: 230 FIDEIDSL 237


>gi|59711404|ref|YP_204180.1| ATP-dependent protease ATP-binding subunit [Vibrio fischeri ES114]
 gi|75354361|sp|Q5E6Q4|CLPX_VIBF1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|59479505|gb|AAW85292.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Vibrio fischeri ES114]
          Length = 428

 Score = 39.7 bits (91), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 60/145 (41%), Gaps = 30/145 (20%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEALD--- 55
           RE L    +S +++   L  PR + E       GQ  A   L V +     R    D   
Sbjct: 50  REELKDNTLSPKESSEELPTPRNIREHLDDYVIGQEHAKKVLAVAVYNHYKRLRNGDTTK 109

Query: 56  --------HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL---- 103
                   ++L +GP G GKT LA+ +AR L V F       + +AG +   + N+    
Sbjct: 110 DGVELGKSNILLIGPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKL 169

Query: 104 ----------EDRDVLFIDEIHRLS 118
                      +R +++IDEI ++S
Sbjct: 170 LQKCDYDPAKAERGIVYIDEIDKIS 194


>gi|76154228|gb|AAX25721.2| SJCHGC01613 protein [Schistosoma japonicum]
          Length = 210

 Score = 39.7 bits (91), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 16/32 (50%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT +A+ ++ + G+NF S  GP
Sbjct: 107 VLLEGPPGCGKTLVAKALSNQAGLNFLSVKGP 138


>gi|77458032|ref|YP_347537.1| DNA polymerase III subunits gamma and tau [Pseudomonas
          fluorescens Pf0-1]
 gi|77382035|gb|ABA73548.1| DNA polymerase III subunit Tau [Pseudomonas fluorescens Pf0-1]
          Length = 696

 Score = 39.7 bits (91), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 6/68 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
          RPR+  E  GQ      LK  I A  +  + L H  LF G  G+GKTT+A+++A+ L   
Sbjct: 11 RPRSFREMVGQTHV---LKALINALDS--QRLHHAYLFTGTRGVGKTTIARIIAKCLNCE 65

Query: 82 FRSTSGPV 89
             TS P 
Sbjct: 66 TGITSSPC 73


>gi|20091941|ref|NP_618016.1| IstB helper protein [Methanosarcina acetivorans C2A]
 gi|19917143|gb|AAM06496.1| IstB helper protein [Methanosarcina acetivorans C2A]
          Length = 257

 Score = 39.7 bits (91), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 50/103 (48%), Gaps = 13/103 (12%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAKAR-AEALDHVLFVGPPGLGKTTLA-----QVVARE 77
            +TLEEF  + +   + K   + A  R    L++V+F+GPPG+GK+ LA     +V    
Sbjct: 71  KKTLEEFDFEFQKSIDKKAIEDLATLRFVHNLENVVFLGPPGVGKSHLAIALGIEVAKAG 130

Query: 78  LGVNFRSTSGPVIAK------AGDLAALLTNLEDRDVLFIDEI 114
           + V F +T G +I K       G L   L       VL IDE+
Sbjct: 131 ISVYFTNT-GNLIEKLKIANREGMLEKKLKGFMKFKVLIIDEM 172


>gi|148259929|ref|YP_001234056.1| ATP-dependent protease ATP-binding subunit [Acidiphilium cryptum
           JF-5]
 gi|326403117|ref|YP_004283198.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Acidiphilium
           multivorum AIU301]
 gi|254763827|sp|A5FX05|CLPX_ACICJ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|146401610|gb|ABQ30137.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acidiphilium
           cryptum JF-5]
 gi|325049978|dbj|BAJ80316.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Acidiphilium
           multivorum AIU301]
          Length = 418

 Score = 39.7 bits (91), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  +++ VGP G GKT LAQ +AR L V F       + +AG +   + N+         
Sbjct: 109 AKSNIMLVGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 168

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDE+ ++S
Sbjct: 169 YNVERAQRGIVYIDEVDKIS 188


>gi|326569250|gb|EGE19311.1| ATP-dependent protease ATP-binding subunit ClpX [Moraxella
           catarrhalis BC7]
          Length = 438

 Score = 39.7 bits (91), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LAQ +A+ L V F       + +AG +   + N+            
Sbjct: 139 NILLIGPTGSGKTLLAQTLAKMLDVPFAMADATTLTEAGYVGEDVENIVQKLLQAADYDV 198

Query: 104 --EDRDVLFIDEIHRLS 118
              ++ +++IDEI ++S
Sbjct: 199 QKAEKGIIYIDEIDKIS 215


>gi|307726327|ref|YP_003909540.1| AAA ATPase central domain-containing protein [Burkholderia sp.
           CCGE1003]
 gi|307586852|gb|ADN60249.1| AAA ATPase central domain protein [Burkholderia sp. CCGE1003]
          Length = 636

 Score = 39.7 bits (91), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 18/35 (51%), Positives = 23/35 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA 91
           +L VG PG+GKT LAQ +A E G NF S +G   +
Sbjct: 226 ILMVGGPGVGKTRLAQALAGECGANFISITGSYFS 260


>gi|281352318|gb|EFB27902.1| hypothetical protein PANDA_009106 [Ailuropoda melanoleuca]
          Length = 735

 Score = 39.7 bits (91), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTN------LEDRDV 108
           VL  GPPG GKT +A+ VA E+G      +GP +I+K  G+  A L        L    +
Sbjct: 337 VLLYGPPGTGKTMIARAVANEVGAYVSVINGPEIISKFYGETEARLRQIFAEAALRHPSI 396

Query: 109 LFIDEIHRLS 118
           +FIDE+  L 
Sbjct: 397 IFIDELDALC 406



 Score = 38.5 bits (88), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 16/32 (50%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG  KT +A+ +A E G+NF +  GP
Sbjct: 611 VLLYGPPGCSKTMIAKALANESGLNFLAIKGP 642


>gi|260768946|ref|ZP_05877880.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           furnissii CIP 102972]
 gi|260616976|gb|EEX42161.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           furnissii CIP 102972]
 gi|315180642|gb|ADT87556.1| ATP-dependent protease ATP-binding subunit [Vibrio furnissii NCTC
           11218]
          Length = 426

 Score = 39.7 bits (91), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LA+ +AR L V F       + +AG +   + N+            
Sbjct: 116 NILLIGPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 175

Query: 104 --EDRDVLFIDEIHRLS 118
              +R +++IDEI ++S
Sbjct: 176 AKAERGIVYIDEIDKIS 192


>gi|300707763|ref|XP_002996077.1| hypothetical protein NCER_100876 [Nosema ceranae BRL01]
 gi|239605343|gb|EEQ82406.1| hypothetical protein NCER_100876 [Nosema ceranae BRL01]
          Length = 520

 Score = 39.7 bits (91), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 36/70 (51%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDRD------V 108
           VL  GPPG GKT LA+ V+     NF S  GP +I+K  GD    + +L  +       V
Sbjct: 314 VLLYGPPGCGKTLLAKAVSNMSHCNFISVRGPELISKFVGDSEKEIRDLFGKAKHLQPCV 373

Query: 109 LFIDEIHRLS 118
           +F DEI  L 
Sbjct: 374 IFFDEIDSLC 383


>gi|238019647|ref|ZP_04600073.1| hypothetical protein VEIDISOL_01521 [Veillonella dispar ATCC 17748]
 gi|237863688|gb|EEP64978.1| hypothetical protein VEIDISOL_01521 [Veillonella dispar ATCC 17748]
          Length = 642

 Score = 39.7 bits (91), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL  GPPG GKT LA+ VA E GV F + SG       V   A  +  L T  +     +
Sbjct: 190 VLLAGPPGTGKTLLAKAVAGEAGVPFFTISGSDFVEMFVGVGASRVRDLFTQAKKNAPCI 249

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 250 IFIDEI 255


>gi|229521843|ref|ZP_04411260.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           cholerae TM 11079-80]
 gi|229340768|gb|EEO05773.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           cholerae TM 11079-80]
          Length = 426

 Score = 39.7 bits (91), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LA+ +AR L V F       + +AG +   + N+            
Sbjct: 116 NILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 175

Query: 104 --EDRDVLFIDEIHRLS 118
              +R +++IDEI ++S
Sbjct: 176 AKAERGIVYIDEIDKIS 192


>gi|228476803|ref|ZP_04061451.1| cell division protein FtsH [Streptococcus salivarius SK126]
 gi|228251540|gb|EEK10677.1| cell division protein FtsH [Streptococcus salivarius SK126]
          Length = 659

 Score = 39.7 bits (91), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLE--DRDV 108
           VL  GPPG GKT LA+ VA E  V F S SG       V   A  + +L  + +  +R +
Sbjct: 220 VLLEGPPGTGKTLLAKAVAGEADVPFFSISGSDFVEMFVGVGASRVRSLFEDAKKAERAI 279

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 280 IFIDEI 285


>gi|224536875|ref|ZP_03677414.1| hypothetical protein BACCELL_01751 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521499|gb|EEF90604.1| hypothetical protein BACCELL_01751 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 615

 Score = 39.7 bits (91), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 10/110 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP T E   GQ    + LK  I   K     L H  LF GP G+GKTT A++ A+ +   
Sbjct: 12  RPTTFESVVGQRALTTTLKNAIATGK-----LAHAYLFCGPRGVGKTTCARIFAKTINCM 66

Query: 82  FRSTSGPVIAKAGDLAAL----LTNLEDRDVLFIDEIHRLSIIVEEILYP 127
             +  G    +     A       N+ + D    + +  +  +VE++  P
Sbjct: 67  TPTADGEACNQCESCTAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIP 116


>gi|184154697|ref|YP_001843037.1| cell division protein FtsH [Lactobacillus fermentum IFO 3956]
 gi|227514337|ref|ZP_03944386.1| M41 family endopeptidase FtsH [Lactobacillus fermentum ATCC 14931]
 gi|183226041|dbj|BAG26557.1| cell division protein FtsH [Lactobacillus fermentum IFO 3956]
 gi|227087309|gb|EEI22621.1| M41 family endopeptidase FtsH [Lactobacillus fermentum ATCC 14931]
 gi|299782819|gb|ADJ40817.1| M41 family endopeptidase FtsH [Lactobacillus fermentum CECT 5716]
          Length = 722

 Score = 39.7 bits (91), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           VL  GPPG GKT LA+ VA E GV F S SG    +   G  A+ + +L ++       +
Sbjct: 229 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKTAPSI 288

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 289 IFIDEI 294


>gi|160899253|ref|YP_001564835.1| AAA ATPase [Delftia acidovorans SPH-1]
 gi|160364837|gb|ABX36450.1| AAA ATPase [Delftia acidovorans SPH-1]
          Length = 1841

 Score = 39.7 bits (91), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 16/53 (30%), Positives = 29/53 (54%)

Query: 41   KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA 93
            ++ +     R + +  ++ + PPG GKTTL + VA  LG+ F   +GP +  +
Sbjct: 1295 QIGVAGENKRTDQMGLLMMISPPGYGKTTLMEYVANRLGLIFMKINGPALGHS 1347


>gi|146082368|ref|XP_001464492.1| hypothetical protein [Leishmania infantum JPCM5]
 gi|134068585|emb|CAM66881.1| conserved hypothetical protein [Leishmania infantum JPCM5]
          Length = 214

 Score = 39.7 bits (91), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 4/56 (7%)

Query: 42 VFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA 97
          +F+E A  R   L H++  GPPG GKTTLA  +A   G+   + +    A AGD+A
Sbjct: 40 IFLEEAFRRPTPL-HIIITGPPGSGKTTLAAKLAAHYGITHVAATS---AAAGDMA 91


>gi|152987354|ref|YP_001350082.1| putative ATP-dependent protease [Pseudomonas aeruginosa PA7]
 gi|150962512|gb|ABR84537.1| ATP-dependent protease La [Pseudomonas aeruginosa PA7]
          Length = 799

 Score = 39.7 bits (91), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 71/166 (42%), Gaps = 40/166 (24%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           VL VGPPG+GKT++ + +A  LG  F R + G +  +A              G L   L 
Sbjct: 379 VLLVGPPGVGKTSIGKSIAESLGRPFYRFSVGGMRDEAEIKGHRRTYIGALPGKLVQALK 438

Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAME----DFQLDLMVGEGPSARSVK 148
            +E  + V+ +DEI +L    +        E L P       D  LDL           +
Sbjct: 439 EVEVMNPVIMLDEIDKLGASYQGDPASALLETLDPEQNVEFLDHYLDL-----------R 487

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           ++LS+   +     +  +  PL DR  + IRL+ Y  E+   I +R
Sbjct: 488 LDLSKVLFVCTANTLDSIPGPLLDRMEV-IRLSGYISEEKLAIAKR 532


>gi|91777844|ref|YP_553052.1| putative cell division protein [Burkholderia xenovorans LB400]
 gi|91690504|gb|ABE33702.1| Putative cell division protein [Burkholderia xenovorans LB400]
          Length = 634

 Score = 39.7 bits (91), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 18/35 (51%), Positives = 23/35 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA 91
           +L VG PG+GKT LAQ +A E G NF S +G   +
Sbjct: 226 ILMVGGPGVGKTRLAQALAGECGANFISITGSYFS 260


>gi|17945419|gb|AAL48764.1| RE17942p [Drosophila melanogaster]
          Length = 572

 Score = 39.7 bits (91), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108
           VL VGPPG GKT LA+ VA E G  F + S   +     G+   +      +        
Sbjct: 329 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSATLTSKYRGESEKMVRLLFEMARFYAPST 388

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 389 IFIDEIDSL 397


>gi|27363511|ref|NP_759039.1| ATP-dependent protease ATP-binding subunit ClpX [Vibrio vulnificus
           CMCP6]
 gi|37679289|ref|NP_933898.1| ATP-dependent protease ATP-binding subunit [Vibrio vulnificus
           YJ016]
 gi|320156968|ref|YP_004189347.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           vulnificus MO6-24/O]
 gi|31340018|sp|Q8DG27|CLPX_VIBVU RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|46576400|sp|Q7MMG6|CLPX_VIBVY RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|27359627|gb|AAO08566.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           vulnificus CMCP6]
 gi|37198032|dbj|BAC93869.1| ATP-dependent Clp protease, ATPase subunit [Vibrio vulnificus
           YJ016]
 gi|319932280|gb|ADV87144.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           vulnificus MO6-24/O]
          Length = 426

 Score = 39.7 bits (91), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LA+ +AR L V F       + +AG +   + N+            
Sbjct: 116 NILLIGPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 175

Query: 104 --EDRDVLFIDEIHRLS 118
              +R +++IDEI ++S
Sbjct: 176 AKAERGIVYIDEIDKIS 192


>gi|17556486|ref|NP_499577.1| hypothetical protein Y75B8A.4 [Caenorhabditis elegans]
 gi|75028907|sp|Q9XW87|LONP2_CAEEL RecName: Full=Lon protease homolog 2, peroxisomal
 gi|3980014|emb|CAA22082.1| C. elegans protein Y75B8A.4, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 773

 Score = 39.7 bits (91), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 88/216 (40%), Gaps = 40/216 (18%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-----LFVGP 62
           L  N S  D DI L + RT+   T   EA  ++K  +    A  +  + V      F GP
Sbjct: 281 LPWNTSTID-DIELHKARTI--LTESHEAMDDVKERVLEHLAVCKMNNSVKGMILCFTGP 337

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD----------------LAALLTNLEDR 106
           PG+GKT++A+ +A  +G  F+  S   I    D                + AL T   + 
Sbjct: 338 PGIGKTSIAKAIAESMGRKFQRVSLGGIRDESDIRGHRRTYVAAMPGRIIEALKTCKTNN 397

Query: 107 DVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIA 158
            V  +DE+ +L        S  + E+L P       D  +       ++  ++S+   IA
Sbjct: 398 PVFLLDEVDKLYSGNQGSPSAALLELLDPEQNSTFHDHYL-------NIPFDVSKIMFIA 450

Query: 159 ATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
               +  L   L+DR  I I ++ Y +++   I + 
Sbjct: 451 TANDIDRLEPALRDRLEI-IEMSGYSLKEKVKICEN 485


>gi|332799278|ref|YP_004460777.1| stage V sporulation protein K [Tepidanaerobacter sp. Re1]
 gi|332697013|gb|AEE91470.1| stage V sporulation protein K [Tepidanaerobacter sp. Re1]
          Length = 335

 Score = 39.7 bits (91), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 114/278 (41%), Gaps = 56/278 (20%)

Query: 37  CSNLKVFIEAAKARAE-------ALDHVLFVGPPGLGKTTLAQVVARELGVNFR-----S 84
              ++ F E  + RAE        + H++F G PG GKTT    VAR LG  F+      
Sbjct: 77  VKEIQAFSEIQRKRAEEKLLAEPQVLHMIFKGNPGTGKTT----VARLLGKIFKHIGILE 132

Query: 85  TSGPVIAKAGDLAALL---TNLEDRD--------VLFIDEIHRLSIIVE--------EIL 125
               V  +  D+       T  + RD        +LFIDE + L+   E        + L
Sbjct: 133 KGHTVEVERADIVGEYIGHTAQKTRDQIKRARGGILFIDEAYSLARGGEKDFGKEAIDTL 192

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP-LQDRFGIPIRLNFYE 184
             AMED++ DL+V         K  +  F          L  NP L+ RF I I  N Y 
Sbjct: 193 VKAMEDYKDDLIV----ILAGYKDEMDWF----------LQINPGLRSRFPIQIEFNDYS 238

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIA--MRSRGTPRIAGRL--LRRVRDFAEVAHAKT 240
           +++L  I +  A+      + EA  +    ++S        +L   R VR+  E A  + 
Sbjct: 239 VDELMQIAKMMAEKRQYRFSPEALLQFEDILQSSMDNMFYNKLGNARLVRNMIEKAIRRQ 298

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
             R ++ + + R++ + +   Q++   + +    FGGG
Sbjct: 299 ALRLVSQSKISRISREDLL--QIEPEDIPVDISEFGGG 334


>gi|325955980|ref|YP_004286590.1| cell division protein [Lactobacillus acidophilus 30SC]
 gi|325332545|gb|ADZ06453.1| cell division protein [Lactobacillus acidophilus 30SC]
          Length = 722

 Score = 39.7 bits (91), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 33/66 (50%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108
           VL  GPPG GKT LA+ VA E  V F S SG       V   A  +  L  N +     +
Sbjct: 229 VLLEGPPGTGKTLLARAVAGEANVPFYSISGSDFVEMFVGVGASRVRDLFNNAKKNAPSI 288

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 289 IFIDEI 294


>gi|325186172|emb|CCA20675.1| unnamed protein product putative [Albugo laibachii Nc14]
          Length = 941

 Score = 39.7 bits (91), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 71/176 (40%), Gaps = 41/176 (23%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF------------------RSTSGPVIAKAGDLAA 98
           + FVGPPG+GKT++ + +A  L   F                  R+  G +  K   +  
Sbjct: 495 ICFVGPPGVGKTSIGKSIAECLNREFYRFSVGGLSDVAEIKGHRRTYVGAMPGKV--IQC 552

Query: 99  LLTNLEDRDVLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKIN 150
           L T      ++ IDEI +L    +        E+L P+     +D  +        V ++
Sbjct: 553 LKTTQSSNPLILIDEIDKLGKGYQGDPASALLELLDPSQNQHFVDHFM-------DVPVD 605

Query: 151 LSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI-----VQRGAKLTGL 201
           LSR   I        +  PL DR  + +RL+ Y+  +  +I     V +  K TGL
Sbjct: 606 LSRILFICTANVTDTIPGPLLDRMEV-LRLSGYDAPEKLSIAREYLVPKVMKRTGL 660


>gi|317123027|ref|YP_004103030.1| Sigma 54 interacting domain protein [Thermaerobacter marianensis
           DSM 12885]
 gi|315593007|gb|ADU52303.1| Sigma 54 interacting domain protein [Thermaerobacter marianensis
           DSM 12885]
          Length = 564

 Score = 39.7 bits (91), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 5/66 (7%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  E+  GQ E    L+  +     +     HVL  GPPG+GKT  A++V  E   N 
Sbjct: 64  RPQRFEDIVGQEEGLRALRAALCGPNPQ-----HVLIYGPPGVGKTAAARLVLEEAKRNP 118

Query: 83  RSTSGP 88
           RS   P
Sbjct: 119 RSPFRP 124


>gi|331242462|ref|XP_003333877.1| cell division cycle protein 48 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309312867|gb|EFP89458.1| cell division cycle protein 48 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 795

 Score = 39.7 bits (91), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT +A+ VA E   NF S  GP
Sbjct: 515 VLLWGPPGCGKTLVAKAVANESQANFISVKGP 546



 Score = 37.0 bits (84), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 10/67 (14%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGV---NFRSTSGPVIAKAGDLAALLTNLEDRD------ 107
           +L  GPPG GKT LA  +A +LGV   N  STS  V   +G+    + ++ ++       
Sbjct: 178 LLLCGPPGCGKTMLANAIANQLGVRLINVSSTSI-VSGMSGESEKAIRDIFEQATKQAPC 236

Query: 108 VLFIDEI 114
           +LFIDEI
Sbjct: 237 LLFIDEI 243


>gi|308160432|gb|EFO62923.1| Replication factor C, subunit 4 [Giardia lamblia P15]
          Length = 322

 Score = 39.7 bits (91), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 19/123 (15%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL---- 78
           RPR+L+   G  E  + L+ F  AA+     L ++L  G PGLGKTT+A  +A ++    
Sbjct: 11  RPRSLDGLIGNPEILARLRYF--AAQGN---LPNILLTGGPGLGKTTIALCLANQMLGAH 65

Query: 79  -GVNFRSTSGPVIAKAGDLAALLTNLEDRDV---------LFIDEIHRLSIIVEEILYPA 128
             V F   +        D+ A +     + V         +F+DE   ++   +++L   
Sbjct: 66  RSVAFLELNASDERNVSDIRAKVKTFAQKQVTLPTGIQKLVFLDECDAMTEAAQQVLRRI 125

Query: 129 MED 131
           M+D
Sbjct: 126 MDD 128


>gi|307307908|ref|ZP_07587633.1| AAA ATPase central domain protein [Sinorhizobium meliloti BL225C]
 gi|306901524|gb|EFN32127.1| AAA ATPase central domain protein [Sinorhizobium meliloti BL225C]
          Length = 623

 Score = 39.7 bits (91), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 28/67 (41%), Gaps = 9/67 (13%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR---------D 107
           +L  GPPG GKT  A  +AR  G  F  TS       G L  +L  +             
Sbjct: 230 LLLSGPPGTGKTLFASALARSCGAKFIGTSSAQWQSKGHLGDMLGAMRKSFREAADAAPS 289

Query: 108 VLFIDEI 114
           VLFIDE 
Sbjct: 290 VLFIDEF 296


>gi|293391573|ref|ZP_06635907.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290952107|gb|EFE02226.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 410

 Score = 39.7 bits (91), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD--------LAALLTNLE--- 104
           ++L +GP G GKT LA+ +AR L V F       + +AG         L  LL N +   
Sbjct: 109 NILLIGPTGSGKTLLAETMARMLNVPFAMADATTLTEAGYVGEDVENVLQKLLQNCDYDI 168

Query: 105 ---DRDVLFIDEIHRLS 118
              ++ +++IDEI +++
Sbjct: 169 ERAEQGIIYIDEIDKIT 185


>gi|323529454|ref|YP_004231606.1| AAA ATPase central domain-containing protein [Burkholderia sp.
           CCGE1001]
 gi|323386456|gb|ADX58546.1| AAA ATPase central domain protein [Burkholderia sp. CCGE1001]
          Length = 638

 Score = 39.7 bits (91), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 18/35 (51%), Positives = 23/35 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA 91
           +L VG PG+GKT LAQ +A E G NF S +G   +
Sbjct: 226 ILMVGGPGVGKTRLAQALAGECGANFISITGSYFS 260


>gi|268592035|ref|ZP_06126256.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Providencia
           rettgeri DSM 1131]
 gi|291312427|gb|EFE52880.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Providencia
           rettgeri DSM 1131]
          Length = 425

 Score = 39.7 bits (91), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LA+ +AR L V F       + +AG +   + N+            
Sbjct: 115 NILLIGPTGSGKTLLAETLARYLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 174

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 175 EKAQRGIVYIDEIDKIS 191


>gi|261346363|ref|ZP_05974007.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Providencia
           rustigianii DSM 4541]
 gi|282565677|gb|EFB71212.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Providencia
           rustigianii DSM 4541]
          Length = 425

 Score = 39.7 bits (91), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LA+ +AR L V F       + +AG +   + N+            
Sbjct: 115 NILLIGPTGSGKTLLAETLARYLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 174

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 175 EKAQRGIVYIDEIDKIS 191


>gi|197335469|ref|YP_002155558.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           fischeri MJ11]
 gi|238690274|sp|B5FBZ9|CLPX_VIBFM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|197316959|gb|ACH66406.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           fischeri MJ11]
          Length = 428

 Score = 39.7 bits (91), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 60/145 (41%), Gaps = 30/145 (20%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEALD--- 55
           RE L    +S +++   L  PR + E       GQ  A   L V +     R    D   
Sbjct: 50  REELKDNTLSPKESSEELPTPRNIREHLDDYVIGQEHAKKVLAVAVYNHYKRLRNGDTTK 109

Query: 56  --------HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL---- 103
                   ++L +GP G GKT LA+ +AR L V F       + +AG +   + N+    
Sbjct: 110 DGVELGKSNILLIGPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKL 169

Query: 104 ----------EDRDVLFIDEIHRLS 118
                      +R +++IDEI ++S
Sbjct: 170 LQKCDYDPAKAERGIVYIDEIDKIS 194


>gi|195389576|ref|XP_002053452.1| GJ23329 [Drosophila virilis]
 gi|194151538|gb|EDW66972.1| GJ23329 [Drosophila virilis]
          Length = 607

 Score = 39.7 bits (91), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108
           VL VGPPG GKT LA+ VA E G  F + S   +     G+   L      +        
Sbjct: 364 VLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPST 423

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 424 IFIDEIDAL 432


>gi|183601062|ref|ZP_02962555.1| hypothetical protein PROSTU_04685 [Providencia stuartii ATCC 25827]
 gi|188019402|gb|EDU57442.1| hypothetical protein PROSTU_04685 [Providencia stuartii ATCC 25827]
          Length = 425

 Score = 39.7 bits (91), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LA+ +AR L V F       + +AG +   + N+            
Sbjct: 115 NILLIGPTGSGKTLLAETLARYLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 174

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 175 EKAQRGIVYIDEIDKIS 191


>gi|163746711|ref|ZP_02154068.1| ATP-dependent protease ATP-binding subunit [Oceanibulbus indolifex
           HEL-45]
 gi|161379825|gb|EDQ04237.1| ATP-dependent protease ATP-binding subunit [Oceanibulbus indolifex
           HEL-45]
          Length = 422

 Score = 39.7 bits (91), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+         
Sbjct: 110 AKSNILLIGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSSE 169

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDE+ +++
Sbjct: 170 YNVERAQRGIVYIDEVDKIT 189


>gi|188581624|ref|YP_001925069.1| ATP-dependent protease ATP-binding subunit ClpX [Methylobacterium
           populi BJ001]
 gi|238692872|sp|B1Z9C8|CLPX_METPB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|179345122|gb|ACB80534.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Methylobacterium populi BJ001]
          Length = 423

 Score = 39.7 bits (91), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  +++ +GP G GKT LAQ +AR L V F       + +AG +   + N+         
Sbjct: 110 AKSNIMLIGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASD 169

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDEI ++S
Sbjct: 170 YNVERAQRGIVYIDEIDKIS 189


>gi|56757311|gb|AAW26827.1| unknown [Schistosoma japonicum]
          Length = 182

 Score = 39.7 bits (91), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 16/32 (50%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT +A+ ++ + G+NF S  GP
Sbjct: 79  VLLEGPPGCGKTLVAKALSNQAGLNFLSVKGP 110


>gi|24644145|ref|NP_524997.2| katanin 60 [Drosophila melanogaster]
 gi|23170422|gb|AAF52059.2| katanin 60 [Drosophila melanogaster]
          Length = 572

 Score = 39.7 bits (91), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108
           VL VGPPG GKT LA+ VA E G  F + S   +     G+   +      +        
Sbjct: 329 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSATLTSKYRGESEKMVRLLFEMARFYAPST 388

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 389 IFIDEIDSL 397


>gi|33599899|ref|NP_887459.1| putative ATPase [Bordetella bronchiseptica RB50]
 gi|33567496|emb|CAE31409.1| putative ATPase [Bordetella bronchiseptica RB50]
          Length = 331

 Score = 39.7 bits (91), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 21/39 (53%), Positives = 25/39 (64%), Gaps = 8/39 (20%)

Query: 50  RAEAL--------DHVLFVGPPGLGKTTLAQVVARELGV 80
           RAEAL        D +LF GPPG GKT  A+V+A ELG+
Sbjct: 109 RAEALQSYGLYPADRLLFCGPPGCGKTLTAEVLASELGL 147


>gi|84686589|ref|ZP_01014482.1| ATP-dependent protease ATP-binding subunit [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84665502|gb|EAQ11979.1| ATP-dependent protease ATP-binding subunit [Rhodobacterales
           bacterium HTCC2654]
          Length = 423

 Score = 39.7 bits (91), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+         
Sbjct: 112 AKSNILLIGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASE 171

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDE+ +++
Sbjct: 172 YNVERAQRGIVYIDEVDKIT 191


>gi|83943112|ref|ZP_00955572.1| ATP-dependent protease ATP-binding subunit [Sulfitobacter sp.
           EE-36]
 gi|83954270|ref|ZP_00962990.1| ATP-dependent protease ATP-binding subunit [Sulfitobacter sp.
           NAS-14.1]
 gi|83841307|gb|EAP80477.1| ATP-dependent protease ATP-binding subunit [Sulfitobacter sp.
           NAS-14.1]
 gi|83846120|gb|EAP83997.1| ATP-dependent protease ATP-binding subunit [Sulfitobacter sp.
           EE-36]
          Length = 421

 Score = 39.7 bits (91), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+         
Sbjct: 110 AKSNILLIGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASE 169

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDE+ +++
Sbjct: 170 YNVERAQRGIVYIDEVDKIT 189


>gi|57242029|ref|ZP_00369969.1| cell division protein (ftsH) [Campylobacter upsaliensis RM3195]
 gi|57017221|gb|EAL54002.1| cell division protein (ftsH) [Campylobacter upsaliensis RM3195]
          Length = 530

 Score = 39.7 bits (91), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           VL +GPPG+GKT +A+ VA E GV F   SG    +   G  A  +  L  R       +
Sbjct: 181 VLMIGPPGVGKTLIAKAVAGEAGVPFFYQSGSSFVEIYVGMGAKRVRELFSRAKMMAPSI 240

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 241 IFIDEI 246


>gi|116048695|ref|YP_792505.1| putative ATP-dependent protease [Pseudomonas aeruginosa UCBPP-PA14]
 gi|296390871|ref|ZP_06880346.1| putative ATP-dependent protease [Pseudomonas aeruginosa PAb1]
 gi|313105601|ref|ZP_07791867.1| putative ATP-dependent protease [Pseudomonas aeruginosa 39016]
 gi|115583916|gb|ABJ09931.1| probable ATP-dependent protease [Pseudomonas aeruginosa UCBPP-PA14]
 gi|310878369|gb|EFQ36963.1| putative ATP-dependent protease [Pseudomonas aeruginosa 39016]
          Length = 799

 Score = 39.7 bits (91), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 71/166 (42%), Gaps = 40/166 (24%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           VL VGPPG+GKT++ + +A  LG  F R + G +  +A              G L   L 
Sbjct: 379 VLLVGPPGVGKTSIGKSIAESLGRPFYRFSVGGMRDEAEIKGHRRTYIGALPGKLVQALK 438

Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAME----DFQLDLMVGEGPSARSVK 148
            +E  + V+ +DEI +L    +        E L P       D  LDL           +
Sbjct: 439 EVEVMNPVIMLDEIDKLGASYQGDPASALLETLDPEQNVEFLDHYLDL-----------R 487

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           ++LS+   +     +  +  PL DR  + IRL+ Y  E+   I +R
Sbjct: 488 LDLSKVLFVCTANTLDSIPGPLLDRMEV-IRLSGYISEEKLAIAKR 532


>gi|313884430|ref|ZP_07818191.1| ATP-dependent metallopeptidase HflB [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312620214|gb|EFR31642.1| ATP-dependent metallopeptidase HflB [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 688

 Score = 39.7 bits (91), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108
           VL  GPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 224 VLLEGPPGTGKTLLAKAVAGEAGVPFFSMSGSEFVEMFVGVGASRVRDLFENAKKAAPAI 283

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 284 IFIDEI 289


>gi|303239034|ref|ZP_07325564.1| Sigma 54 interacting domain protein [Acetivibrio cellulolyticus
           CD2]
 gi|302593372|gb|EFL63090.1| Sigma 54 interacting domain protein [Acetivibrio cellulolyticus
           CD2]
          Length = 559

 Score = 39.7 bits (91), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 5/62 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP TL+E  GQ +    L+  +     +     HVL  GPPG+GKT  A+V+  E   N 
Sbjct: 63  RPSTLKEIVGQEQGLKALRAALCGPNPQ-----HVLIYGPPGVGKTAAARVILDEAKQND 117

Query: 83  RS 84
            S
Sbjct: 118 SS 119


>gi|295425666|ref|ZP_06818353.1| cell division protein FtsH [Lactobacillus amylolyticus DSM 11664]
 gi|295064682|gb|EFG55603.1| cell division protein FtsH [Lactobacillus amylolyticus DSM 11664]
          Length = 716

 Score = 39.7 bits (91), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 33/66 (50%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108
           VL  GPPG GKT LA+ VA E  V F S SG       V   A  +  L  N +     +
Sbjct: 228 VLLEGPPGTGKTLLARAVAGEANVPFYSMSGSDFVEMFVGVGASRVRDLFNNAKKNAPSI 287

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 288 IFIDEI 293


>gi|282857610|ref|ZP_06266828.1| AAA ATPase, CDC48 [Pyramidobacter piscolens W5455]
 gi|282584548|gb|EFB89898.1| AAA ATPase, CDC48 [Pyramidobacter piscolens W5455]
          Length = 710

 Score = 39.7 bits (91), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 40/92 (43%), Gaps = 10/92 (10%)

Query: 9   SRNVSQEDADISLLRPR--TLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVL 58
           S +V  E A I  L+P+  T  +  G       ++  IE      EA           VL
Sbjct: 150 STDVVLERAQIGALKPKKITYADIGGLDAQLRRIREMIELPLKFPEAFVRLGVEPPKGVL 209

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
             GPPG GKT +A+ VA E    F S SGP I
Sbjct: 210 LYGPPGTGKTVIARAVANESDAWFTSISGPEI 241


>gi|294932355|ref|XP_002780231.1| replication factor C subunit, putative [Perkinsus marinus ATCC
           50983]
 gi|239890153|gb|EER12026.1| replication factor C subunit, putative [Perkinsus marinus ATCC
           50983]
          Length = 829

 Score = 39.7 bits (91), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 56/127 (44%), Gaps = 40/127 (31%)

Query: 23  RPRTLEEFTGQVEACSNLKVFI-----------------------EAAKARAEALDHVLF 59
           +PRTL++  G     + L+ ++                       E   A+A     VL 
Sbjct: 296 KPRTLKDLVGNNAPITKLRTWLQDWEKVHVHGQKKPVTFRGRGVPENVNAKA-----VLV 350

Query: 60  VGPPGLGKTTLAQVVARELG---VNFRSTSGPVIAKAGDLAA-LLTN--------LEDRD 107
            GPPG+GKTT  ++VARELG   + F ++     A   +LA+ L TN        L+ + 
Sbjct: 351 SGPPGIGKTTACRLVARELGYMPMEFNASDQRNKATVDNLASGLATNAVIGQNYSLKQKP 410

Query: 108 VLFIDEI 114
            L +DE+
Sbjct: 411 CLVMDEV 417


>gi|254479231|ref|ZP_05092576.1| stage V sporulation protein K [Carboxydibrachium pacificum DSM
           12653]
 gi|214034832|gb|EEB75561.1| stage V sporulation protein K [Carboxydibrachium pacificum DSM
           12653]
          Length = 302

 Score = 39.7 bits (91), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 72/283 (25%), Positives = 120/283 (42%), Gaps = 65/283 (22%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALD------HVLFVGPPGLGKTTLAQV 73
           SL+    ++E   ++ A S L++     K + E L       H++F G PG GKTT+A++
Sbjct: 47  SLIGLHKVKEIIYEIYAFSQLQM-----KRKKEGLATDPIVLHMIFKGNPGTGKTTVARI 101

Query: 74  VAREL-GVNFRSTSGPVIAKAGDLAA---------LLTNLEDR--DVLFIDEIHRLSIIV 121
           + + L G+        V  +  DL           +  N++     +LF+DE + L+   
Sbjct: 102 LGKLLKGIGVLEKGHVVEVERADLVGEYIGHTAHRVRENVKKALGGILFVDEAYSLA--- 158

Query: 122 EEILYPAMEDF---QLDLMVGEGPSARSVKINLSRFTLIAATTR----VGLLTNP-LQDR 173
                   +DF    +D +V E    R      ++F LI A  +      L TNP L+ R
Sbjct: 159 ----RGGEKDFGKEAIDTLVKEMEDNR------NKFILILAGYKHEMEYFLNTNPGLRSR 208

Query: 174 FGIPIRLNF--YEIEDLKTIVQRGAKLTGLAVTDEAACEI--------AMRSRGTPRIAG 223
           F  PI+++F  Y IE+L  I +   K     +T+ A  ++        A R  G  R+  
Sbjct: 209 F--PIQIDFPDYTIEELLQIAEVMVKNRQYKLTESAKRKLMKILIKNDASREMGNARM-- 264

Query: 224 RLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLR 266
                VR+  E A  K   R +    + +   D +  D +D+R
Sbjct: 265 -----VRNIIEKAIRKQAVRVLNKVNITKE--DLITIDSIDIR 300


>gi|168010201|ref|XP_001757793.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162691069|gb|EDQ77433.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 893

 Score = 39.7 bits (91), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 90/216 (41%), Gaps = 39/216 (18%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKV----FIEAAKARAEALDHVL-FVGP 62
           L   V+ E+ +I L+  +  E+   +    S +K     ++   K + +A   VL FVGP
Sbjct: 354 LPWQVASEEREIDLVAAQ--EQLDSEHYGLSKVKKRIIEYLAVRKLKPDARGPVLCFVGP 411

Query: 63  PGLGKTTLAQVVARELGVNF-RSTSGPVIAKA----------GDLAALLTNLEDR----- 106
           PG+GKT+LA  +A  LG  F R + G V  +A          G +   L +   R     
Sbjct: 412 PGVGKTSLASSIAGALGRKFIRLSLGGVKDEADIRGHRRTYIGSMPGRLIDGIKRVGVNN 471

Query: 107 DVLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIA 158
            V+ +DEI +    V         E+L P       D  +       +V  ++S+   +A
Sbjct: 472 PVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYL-------NVPFDVSKVVFVA 524

Query: 159 ATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
              RV  +  PL DR  + I L  Y  E+   I  R
Sbjct: 525 TANRVQTMPAPLLDRMEV-IELPGYTSEEKLRIAMR 559


>gi|156378275|ref|XP_001631069.1| predicted protein [Nematostella vectensis]
 gi|156218102|gb|EDO39006.1| predicted protein [Nematostella vectensis]
          Length = 573

 Score = 39.7 bits (91), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DV 108
           +L  GP G GKT +A+ VA E GV+F   +GP +           L  + T  +++   +
Sbjct: 64  ILLYGPSGTGKTMIARAVANETGVHFFCINGPEVLSRYYGETEARLREIFTEAQNKSPSI 123

Query: 109 LFIDEIHRLS 118
           +FIDE+  L 
Sbjct: 124 VFIDELDALC 133



 Score = 37.0 bits (84), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 15/32 (46%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG  KT +A+ +A E G+NF +  GP
Sbjct: 345 ILMYGPPGCSKTLIARALATESGLNFIAIKGP 376


>gi|78186575|ref|YP_374618.1| AAA ATPase, CDC48 [Chlorobium luteolum DSM 273]
 gi|78166477|gb|ABB23575.1| AAA ATPase, CDC48 [Chlorobium luteolum DSM 273]
          Length = 718

 Score = 39.7 bits (91), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 34/70 (48%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--------AKAGDLAALLTNLEDRDV 108
           V+  G PG GKT LA+ +A E GVNF S  GP I         KA      L       +
Sbjct: 493 VILYGKPGTGKTWLAKALATESGVNFISVKGPEIISRFIGESEKAVRELFRLAKQSAPTI 552

Query: 109 LFIDEIHRLS 118
           +F+DEI  L+
Sbjct: 553 IFLDEIDSLA 562



 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL------EDRDV 108
           V   GPPG GKT + + VARE    F + SGP I     G+  A + N+          +
Sbjct: 218 VFLYGPPGTGKTLIVRAVARETDAYFINISGPEIMGKFYGESEARIRNIFAEAEAHAPSI 277

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 278 IFIDEIDAIA 287


>gi|32266321|ref|NP_860353.1| membrane bound zinc metallopeptidase [Helicobacter hepaticus ATCC
           51449]
 gi|32262371|gb|AAP77419.1| membrane bound zinc metallopeptidase [Helicobacter hepaticus ATCC
           51449]
          Length = 611

 Score = 39.7 bits (91), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E  V F S SG
Sbjct: 186 VLLVGPPGTGKTLLAKAVAGEANVPFFSMSG 216


>gi|39996890|ref|NP_952841.1| ATP-dependent protease ATP-binding subunit ClpX [Geobacter
           sulfurreducens PCA]
 gi|61211572|sp|Q74C83|CLPX_GEOSL RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|39983778|gb|AAR35168.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Geobacter
           sulfurreducens PCA]
          Length = 417

 Score = 39.7 bits (91), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 60/128 (46%), Gaps = 29/128 (22%)

Query: 20  SLLRPR----TLEEFT-GQVEACSNLKVFIEAAKARAEAL----------DHVLFVGPPG 64
            L +PR     L+E+  GQ +A   L V +     R E++           ++L +GP G
Sbjct: 62  KLPKPREIKDVLDEYVIGQDQAKKVLAVAVYNHYKRIESMGKPSDVEMQKSNILLLGPTG 121

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---EDRDV-------LF 110
            GKT LAQ +AR L V F       + +AG    D+  ++ NL    D DV       ++
Sbjct: 122 SGKTLLAQTLARILKVPFAMADATNLTEAGYVGEDVENIILNLLQAADYDVERAQKGIIY 181

Query: 111 IDEIHRLS 118
           IDEI +++
Sbjct: 182 IDEIDKIA 189


>gi|18422747|ref|NP_568675.1| LON2 (LON PROTEASE 2); ATP binding / ATP-dependent peptidase/
           nucleoside-triphosphatase/ nucleotide binding /
           serine-type endopeptidase/ serine-type peptidase
           [Arabidopsis thaliana]
 gi|3914002|sp|O64948|LONP2_ARATH RecName: Full=Lon protease homolog 2, peroxisomal
 gi|2935279|gb|AAC05085.1| Lon protease [Arabidopsis thaliana]
 gi|9759446|dbj|BAB10243.1| mitochondrial Lon protease homolog 1 precursor [Arabidopsis
           thaliana]
 gi|332008077|gb|AED95460.1| ATP-dependent Lon protease [Arabidopsis thaliana]
          Length = 888

 Score = 39.7 bits (91), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 84/206 (40%), Gaps = 33/206 (16%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQ 72
           + + D+   + R   +  G  +    +  ++   K + +A   VL FVGPPG+GKT+LA 
Sbjct: 360 EHELDLKAAKERLDSDHYGLAKVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLAS 419

Query: 73  VVARELGVNF-RSTSGPVIAKA----------GDLAALLTNLEDR-----DVLFIDEIHR 116
            +A  LG  F R + G V  +A          G +   L +   R      V+ +DEI +
Sbjct: 420 SIAAALGRKFVRLSLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEIDK 479

Query: 117 LSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
               V         E+L P       D  +       +V  +LS+   +A   RV  +  
Sbjct: 480 TGSDVRGDPASALLEVLDPEQNKSFNDHYL-------NVPYDLSKVVFVATANRVQPIPP 532

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQR 194
           PL DR  + I L  Y  E+   I  R
Sbjct: 533 PLLDRMEL-IELPGYTQEEKLKIAMR 557


>gi|14521830|ref|NP_127306.1| methanol dehydrogenase regulatory protein [Pyrococcus abyssi GE5]
 gi|5459050|emb|CAB50536.1| moxR-1 methanol dehydrogenase regulatory protein [Pyrococcus abyssi
           GE5]
          Length = 317

 Score = 39.7 bits (91), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 55/121 (45%), Gaps = 19/121 (15%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTS- 86
           E F G+VE     KVF     A A    +VLF   PGLGKT LA+  A+ LG+N+R    
Sbjct: 14  EVFIGKVEVVR--KVF-----AAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLNYRRIQF 66

Query: 87  GPVIAKAGDLAALLTNLED-----------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
            P +  A  +   +   E             +VL  DEI+R     +  L  AME+ Q+ 
Sbjct: 67  TPDLLPADIIGTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAMEERQVT 126

Query: 136 L 136
           +
Sbjct: 127 I 127


>gi|87306773|ref|ZP_01088920.1| cell division protein FtsH [Blastopirellula marina DSM 3645]
 gi|87290952|gb|EAQ82839.1| cell division protein FtsH [Blastopirellula marina DSM 3645]
          Length = 356

 Score = 39.7 bits (91), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 19/37 (51%), Positives = 24/37 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA 93
           VL VGPPG GKT LA+ +A E GV F S S   +++ 
Sbjct: 242 VLLVGPPGTGKTLLAKAIAGEAGVTFFSLSALTLSRC 278


>gi|298242189|ref|ZP_06965996.1| transcriptional regulator, TrmB [Ktedonobacter racemifer DSM 44963]
 gi|297555243|gb|EFH89107.1| transcriptional regulator, TrmB [Ktedonobacter racemifer DSM 44963]
          Length = 1011

 Score = 39.7 bits (91), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 62/137 (45%), Gaps = 35/137 (25%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKAR----AEALDHVLFVGPPGLGKTTLAQVV-ARELGV 80
           + E   G  E    LKV I+ AKA        L H L  GP G+GKTTLA+++ +  L  
Sbjct: 136 SFETMIGHHEG---LKVAIQQAKAAILYPPRGL-HTLLYGPSGVGKTTLARLMHSFALEH 191

Query: 81  NFRSTSGPVIA-----KAGDLAALLTNL----------EDRD-----------VLFIDEI 114
           N  S   P I+      AG+   L+ +L           DRD           +LF+DE+
Sbjct: 192 NAFSPDAPFISFNCADYAGNPQLLMGHLFGVVKGAYTGADRDRAGLVEQAHRGILFLDEV 251

Query: 115 HRLSIIVEEILYPAMED 131
           HRL    +E+L+  M+ 
Sbjct: 252 HRLPPEGQEMLFYLMDQ 268


>gi|240125888|ref|ZP_04738774.1| ATP-dependent protease ATP-binding subunit ClpX [Neisseria
           gonorrhoeae SK-92-679]
 gi|268684487|ref|ZP_06151349.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae
           SK-92-679]
 gi|268624771|gb|EEZ57171.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae
           SK-92-679]
          Length = 414

 Score = 39.7 bits (91), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---EDRDV 108
           ++L +GP G GKT LAQ +AR+L V F       + +AG    D+  ++T L    D DV
Sbjct: 114 NILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDV 173

Query: 109 -------LFIDEIHRLS 118
                  ++IDEI ++S
Sbjct: 174 EKARHGIVYIDEIDKIS 190


>gi|212709198|ref|ZP_03317326.1| hypothetical protein PROVALCAL_00231 [Providencia alcalifaciens DSM
           30120]
 gi|212688110|gb|EEB47638.1| hypothetical protein PROVALCAL_00231 [Providencia alcalifaciens DSM
           30120]
          Length = 425

 Score = 39.7 bits (91), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LA+ +AR L V F       + +AG +   + N+            
Sbjct: 115 NILLIGPTGSGKTLLAETLARYLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 174

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 175 EKAQRGIVYIDEIDKIS 191


>gi|168186117|ref|ZP_02620752.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           botulinum C str. Eklund]
 gi|169296071|gb|EDS78204.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           botulinum C str. Eklund]
          Length = 431

 Score = 39.7 bits (91), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +AR L V F       + +AG    D+  +L  L        
Sbjct: 110 NILLLGPTGSGKTLLAQTLARLLNVPFAIADATTLTEAGYVGEDVENILLKLIQNADYDI 169

Query: 104 --EDRDVLFIDEIHRLS 118
              +R +++IDEI +++
Sbjct: 170 EKAERGIIYIDEIDKIA 186


>gi|124028210|ref|YP_001013530.1| ATP-dependent protease [Hyperthermus butylicus DSM 5456]
 gi|123978904|gb|ABM81185.1| ATP-dependent protease [Hyperthermus butylicus DSM 5456]
          Length = 736

 Score = 39.7 bits (91), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT LA+  A E G NF +  GP I
Sbjct: 495 ILLFGPPGTGKTLLAKAAATESGANFIAVRGPEI 528



 Score = 37.7 bits (86), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG+GKT LA+ +A E    F + +GP I
Sbjct: 222 ILLYGPPGVGKTLLAKAIANETNAYFIAINGPEI 255


>gi|52317098|ref|NP_999902.2| replication factor C subunit 4 [Danio rerio]
 gi|49619077|gb|AAT68123.1| replication factor C subunit RFC4 [Danio rerio]
          Length = 358

 Score = 39.7 bits (91), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 5/60 (8%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          +   RP+ ++E   Q E  + LK  +E A      L ++LF GPPG GKT+     AREL
Sbjct: 36 VEKYRPKCVDEVAFQEEVVAVLKKSLEGAD-----LPNLLFYGPPGTGKTSTILAAAREL 90


>gi|73987072|ref|XP_854391.1| PREDICTED: similar to Lon protease homolog, mitochondrial precursor
           (Lon protease-like protein) (LONP) (LONHs) isoform 1
           [Canis familiaris]
          Length = 960

 Score = 39.7 bits (91), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 87/207 (42%), Gaps = 33/207 (15%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLA 71
           S E+ D++  +    E+  G  +    +  FI  ++ R      +L F GPPG+GKT++A
Sbjct: 475 SNENLDLARAQAVLEEDHYGMEDVKKRILEFIAVSQLRGSTQGKILCFYGPPGVGKTSIA 534

Query: 72  QVVARELGVN-FRSTSGP--------------VIAKAGDLAALLTNLEDRD-VLFIDEIH 115
           + +AR L    FR + G               V A  G +   L   +  + ++ IDE+ 
Sbjct: 535 RSIARALNREYFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLILIDEVD 594

Query: 116 RL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           ++        S  + E+L P      LD  +        V ++LS+   I        + 
Sbjct: 595 KIGRGYQGDPSSALLELLDPEQNANFLDHYL-------DVPVDLSKVLFICTANVTETIP 647

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQR 194
            PL+DR  + I ++ Y  ++   I +R
Sbjct: 648 EPLRDRMEM-INVSGYVAQEKLAIAER 673


>gi|120556298|ref|YP_960649.1| ATP-dependent metalloprotease FtsH [Marinobacter aquaeolei VT8]
 gi|120326147|gb|ABM20462.1| membrane protease FtsH catalytic subunit [Marinobacter aquaeolei
           VT8]
          Length = 624

 Score = 39.7 bits (91), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 38/69 (55%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           VL VGPPG GKT LA+ VA E  V F S SG    +   G  AA + +L ++       +
Sbjct: 193 VLLVGPPGTGKTLLAKAVAGEAAVPFFSISGSEFVEMFVGVGAARVRDLFEQARAQAPAI 252

Query: 109 LFIDEIHRL 117
           +FIDE+  L
Sbjct: 253 IFIDELDAL 261


>gi|82705588|ref|XP_727032.1| cell division protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23482685|gb|EAA18597.1| cell division protein [Plasmodium yoelii yoelii]
          Length = 1110

 Score = 39.7 bits (91), Expect = 0.65,   Method: Composition-based stats.
 Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 14/80 (17%)

Query: 54  LDH-----VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTN 102
           +DH     +LF G  G GKT LA+ +A EL  +F   SG    +      A  +  L  N
Sbjct: 577 IDHPLNSCILFTGETGTGKTLLAKTIANELDADFMHVSGSSFIELYIGNGASKIRNLFKN 636

Query: 103 LEDRD---VLFIDEIHRLSI 119
            ++     V+FIDEI  + I
Sbjct: 637 AQNNKNPVVIFIDEIDSIGI 656


>gi|331270304|ref|YP_004396796.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           botulinum BKT015925]
 gi|329126854|gb|AEB76799.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           botulinum BKT015925]
          Length = 431

 Score = 39.7 bits (91), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +AR L V F       + +AG    D+  +L  L        
Sbjct: 110 NILLLGPTGSGKTLLAQTLARLLNVPFAIADATTLTEAGYVGEDVENILLKLIQNADYDV 169

Query: 104 --EDRDVLFIDEIHRLS 118
              +R +++IDEI +++
Sbjct: 170 EKAERGIIYIDEIDKIA 186


>gi|317507802|ref|ZP_07965504.1| ATP-dependent metallopeptidase HflB [Segniliparus rugosus ATCC
           BAA-974]
 gi|316253921|gb|EFV13289.1| ATP-dependent metallopeptidase HflB [Segniliparus rugosus ATCC
           BAA-974]
          Length = 694

 Score = 39.7 bits (91), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 33/59 (55%), Gaps = 6/59 (10%)

Query: 34  VEACSNLKVFIEAAKARAEALDH-----VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VE    +K F++   AR +AL       VL  GPPG GKT LA+ VA E GV F + SG
Sbjct: 179 VEELYEIKDFLQN-PARYQALGAKIPRGVLLFGPPGTGKTLLARAVAGEAGVPFFTISG 236


>gi|262068218|ref|ZP_06027830.1| stage V sporulation protein K [Fusobacterium periodonticum ATCC
           33693]
 gi|291378086|gb|EFE85604.1| stage V sporulation protein K [Fusobacterium periodonticum ATCC
           33693]
          Length = 363

 Score = 39.7 bits (91), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 94/228 (41%), Gaps = 58/228 (25%)

Query: 56  HVLFVGPPGLGKTTLAQVVAR---ELGVNFR------STSGPVIAKAGDLAALLTNLEDR 106
           H+ F G PG GKTT+A++V R   ++G+  +      S +  +    G  A  +  + + 
Sbjct: 143 HLAFTGNPGTGKTTVARIVGRIYKQIGLLSKGHFIEVSRTDLIAGYQGQTALKVKKVIES 202

Query: 107 ---DVLFIDEIHRLS-----------IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152
               VLFIDE + ++            + E  L  A+ED++ DL+V              
Sbjct: 203 AKGGVLFIDEAYSITENDNNDSYGKECLTE--LTKALEDYREDLVV-------------- 246

Query: 153 RFTLIAATT---RVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAA 208
              ++A  T        +NP L+ RF   I    Y +E+L+ I+    K     + +E  
Sbjct: 247 ---IVAGYTEPMNKFFESNPGLKSRFNTFIEFQDYNVEELEEILMTMCKNNDYLLNEELK 303

Query: 209 CEIA------MRSRGTPRIAGRLLRRVRD------FAEVAHAKTITRE 244
            ++       + ++      GR++R V D         V + + ITRE
Sbjct: 304 IKVKNFFAEQLSNKNQNFANGRMVRNVYDDLIMCQARRVVNIENITRE 351


>gi|238689907|sp|B4USW8|KATL1_OTOGA RecName: Full=Katanin p60 ATPase-containing subunit A-like 1;
           Short=Katanin p60 subunit A-like 1; AltName: Full=p60
           katanin-like 1
 gi|196050398|gb|ACG64309.1| katanin p60 ATPase-containing subunit A-like 1 (predicted)
           [Otolemur garnettii]
          Length = 490

 Score = 39.7 bits (91), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL VGPPG GKT LA+ VA E G  F + S   +
Sbjct: 244 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTL 277


>gi|170692615|ref|ZP_02883777.1| AAA ATPase central domain protein [Burkholderia graminis C4D1M]
 gi|170142271|gb|EDT10437.1| AAA ATPase central domain protein [Burkholderia graminis C4D1M]
          Length = 638

 Score = 39.7 bits (91), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 18/35 (51%), Positives = 23/35 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA 91
           +L VG PG+GKT LAQ +A E G NF S +G   +
Sbjct: 226 ILMVGGPGVGKTRLAQALAGECGANFISITGSYFS 260


>gi|159905310|ref|YP_001548972.1| ATPase central domain-containing protein [Methanococcus maripaludis
           C6]
 gi|159886803|gb|ABX01740.1| AAA ATPase central domain protein [Methanococcus maripaludis C6]
          Length = 371

 Score = 39.7 bits (91), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 4/63 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKV---FIEAAKARAE-ALDHVLFVGPPGLGKTTLAQVVARE 77
            +    EE  GQ++A    K+   ++E  +   E A  ++LF GPPG GKT LA+ +A E
Sbjct: 120 FKETNFEEVIGQLDAKKKCKIVIKYLENPEIFGEWAPKNILFYGPPGTGKTMLARALATE 179

Query: 78  LGV 80
             V
Sbjct: 180 TDV 182


>gi|146100765|ref|XP_001468939.1| hypothetical protein [Leishmania infantum]
 gi|134073308|emb|CAM72034.1| conserved hypothetical protein [Leishmania infantum JPCM5]
 gi|322502948|emb|CBZ38032.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 361

 Score = 39.7 bits (91), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGDL---AALLTNLEDR---DV 108
           VL  GPPG GKT LA+ +A+ELG +F + +   I     GD    AA +  L  +    V
Sbjct: 138 VLLYGPPGTGKTLLARALAKELGCSFINVNTESIFSKWVGDTERNAAAVFTLAAKISPCV 197

Query: 109 LFIDEIHRL 117
           +F+DEI  L
Sbjct: 198 IFVDEIDSL 206


>gi|55820115|ref|YP_138557.1| cell division protein [Streptococcus thermophilus LMG 18311]
 gi|55822005|ref|YP_140446.1| cell division protein [Streptococcus thermophilus CNRZ1066]
 gi|55736100|gb|AAV59742.1| cell division protein [Streptococcus thermophilus LMG 18311]
 gi|55737990|gb|AAV61631.1| cell division protein [Streptococcus thermophilus CNRZ1066]
          Length = 655

 Score = 39.7 bits (91), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLE--DRDV 108
           VL  GPPG GKT LA+ VA E  V F S SG       V   A  + +L  + +  +R +
Sbjct: 220 VLLEGPPGTGKTLLAKAVAGEADVPFFSISGSDFVEMFVGVGASRVRSLFEDAKKAERAI 279

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 280 IFIDEI 285


>gi|323139857|ref|ZP_08074887.1| ATP-dependent metalloprotease FtsH [Methylocystis sp. ATCC 49242]
 gi|322394884|gb|EFX97455.1| ATP-dependent metalloprotease FtsH [Methylocystis sp. ATCC 49242]
          Length = 619

 Score = 39.7 bits (91), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           +L VGPPG GKT LA+ VA E GV F S +G
Sbjct: 196 ILLVGPPGTGKTLLARAVAGEAGVPFLSITG 226


>gi|319900098|ref|YP_004159826.1| DNA polymerase III, tau subunit [Bacteroides helcogenes P 36-108]
 gi|319415129|gb|ADV42240.1| DNA polymerase III, tau subunit [Bacteroides helcogenes P 36-108]
          Length = 611

 Score = 39.7 bits (91), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 10/110 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP T E   GQ    + LK  I   K     L H  LF GP G+GKTT A++ A+ +   
Sbjct: 12  RPSTFESVVGQRALTTTLKNAIATGK-----LAHAYLFCGPRGVGKTTCARIFAKTINCM 66

Query: 82  FRSTSGPVIAKAGDLAAL----LTNLEDRDVLFIDEIHRLSIIVEEILYP 127
             +  G    +     A       N+ + D    + +  +  +VE++  P
Sbjct: 67  TPTADGEACNQCESCTAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIP 116


>gi|295091048|emb|CBK77155.1| ATP-dependent metalloprotease FtsH [Clostridium cf. saccharolyticum
           K10]
          Length = 699

 Score = 39.7 bits (91), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 35/69 (50%), Gaps = 7/69 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIE-------AAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G+ EA  +LK  ++         K  A+     L VGPPG GKT LA+ VA E 
Sbjct: 181 TFKDVAGEDEAKESLKEIVDFLHNPGKYTKIGAKLPKGALLVGPPGTGKTLLAKAVAGEA 240

Query: 79  GVNFRSTSG 87
            V F S SG
Sbjct: 241 KVPFFSLSG 249


>gi|258621303|ref|ZP_05716337.1| ATP-dependent Clp protease ATP-binding subunit clpX [Vibrio mimicus
           VM573]
 gi|258586691|gb|EEW11406.1| ATP-dependent Clp protease ATP-binding subunit clpX [Vibrio mimicus
           VM573]
          Length = 426

 Score = 39.7 bits (91), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LA+ +AR L V F       + +AG +   + N+            
Sbjct: 116 NILLIGPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 175

Query: 104 --EDRDVLFIDEIHRLS 118
              +R +++IDEI ++S
Sbjct: 176 AKAERGIVYIDEIDKIS 192


>gi|258625373|ref|ZP_05720270.1| ATP-dependent Clp protease ATP-binding subunit clpX [Vibrio mimicus
           VM603]
 gi|262166051|ref|ZP_06033788.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio mimicus
           VM223]
 gi|262171084|ref|ZP_06038762.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio mimicus
           MB-451]
 gi|258582364|gb|EEW07216.1| ATP-dependent Clp protease ATP-binding subunit clpX [Vibrio mimicus
           VM603]
 gi|261892160|gb|EEY38146.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio mimicus
           MB-451]
 gi|262025767|gb|EEY44435.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio mimicus
           VM223]
          Length = 426

 Score = 39.7 bits (91), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LA+ +AR L V F       + +AG +   + N+            
Sbjct: 116 NILLIGPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 175

Query: 104 --EDRDVLFIDEIHRLS 118
              +R +++IDEI ++S
Sbjct: 176 AKAERGIVYIDEIDKIS 192


>gi|227894506|ref|ZP_04012311.1| M41 family endopeptidase FtsH [Lactobacillus ultunensis DSM 16047]
 gi|227863665|gb|EEJ71086.1| M41 family endopeptidase FtsH [Lactobacillus ultunensis DSM 16047]
          Length = 717

 Score = 39.7 bits (91), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 33/66 (50%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108
           VL  GPPG GKT LA+ VA E  V F S SG       V   A  +  L  N +     +
Sbjct: 229 VLLEGPPGTGKTLLARAVAGEANVPFYSISGSDFVEMFVGVGASRVRDLFNNAKKNAPSI 288

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 289 IFIDEI 294


>gi|210616887|ref|ZP_03291268.1| hypothetical protein CLONEX_03489 [Clostridium nexile DSM 1787]
 gi|210149592|gb|EEA80601.1| hypothetical protein CLONEX_03489 [Clostridium nexile DSM 1787]
          Length = 121

 Score = 39.7 bits (91), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
          +  RP+TL E  GQ E    LK  +   K  +      LF G  G GKT++A+++AR + 
Sbjct: 4  TTYRPQTLSEVVGQTENILTLKKQMTQNKFDSA----YLFAGHRGTGKTSIARILARSIC 59

Query: 80 VNFRSTSGPV 89
              + +GP 
Sbjct: 60 CEHPTENGPC 69


>gi|254302271|ref|ZP_04969629.1| S14 family endopeptidase ClpX [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148322463|gb|EDK87713.1| S14 family endopeptidase ClpX [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 423

 Score = 39.7 bits (91), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           +VL VGP G GKT LAQ +AR L V F       + +AG    D+  +L  L        
Sbjct: 124 NVLLVGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGDDVENVLVRLIQACNYDI 183

Query: 104 --EDRDVLFIDEIHRLS 118
              +R +++IDE  +++
Sbjct: 184 PNAERGIIYIDEFDKIA 200


>gi|149239116|ref|XP_001525434.1| 26S protease subunit RPT4 [Lodderomyces elongisporus NRRL YB-4239]
 gi|146450927|gb|EDK45183.1| 26S protease subunit RPT4 [Lodderomyces elongisporus NRRL YB-4239]
          Length = 434

 Score = 39.7 bits (91), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVN--FRSTSGPVIAKAGDLAALLTNL------EDRDV 108
           VL  GPPG GKT LA+ VA  +G N  F   SG V    G+ A L+  +       +  +
Sbjct: 215 VLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARLIREMFAYAKEHEPCI 274

Query: 109 LFIDEI 114
           +F+DEI
Sbjct: 275 IFMDEI 280


>gi|134098636|ref|YP_001104297.1| shikimate kinase I [Saccharopolyspora erythraea NRRL 2338]
 gi|291003678|ref|ZP_06561651.1| shikimate kinase I [Saccharopolyspora erythraea NRRL 2338]
 gi|226729540|sp|A4FBE7|AROK_SACEN RecName: Full=Shikimate kinase; Short=SK
 gi|133911259|emb|CAM01372.1| shikimate kinase I [Saccharopolyspora erythraea NRRL 2338]
          Length = 175

 Score = 39.7 bits (91), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 19/37 (51%), Positives = 25/37 (67%)

Query: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG 94
          + VGPPG GKTT+ +++A  LGV FR T   V+  AG
Sbjct: 6  VVVGPPGAGKTTVGRLLAERLGVAFRDTDDDVVRVAG 42


>gi|119493255|ref|ZP_01624095.1| AAA ATPase, central region [Lyngbya sp. PCC 8106]
 gi|119452728|gb|EAW33906.1| AAA ATPase, central region [Lyngbya sp. PCC 8106]
          Length = 683

 Score = 39.7 bits (91), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 8/92 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L   I     R   +   LF GP G GKT+ A+++A+ L  N 
Sbjct: 11  RPQTFADLVGQDAIATTLTNAIH----RGRIVPAYLFTGPRGTGKTSSARILAKSL--NC 64

Query: 83  RSTSGPVIAKAGDLAAL--LTNLEDRDVLFID 112
            ST  P     G  A    +TN    DV+ ID
Sbjct: 65  LSTDEPTATPCGTCAVCKGITNGSTLDVIEID 96


>gi|116071741|ref|ZP_01469009.1| ATP-dependent protease ATP-binding subunit [Synechococcus sp.
           BL107]
 gi|116065364|gb|EAU71122.1| ATP-dependent protease ATP-binding subunit [Synechococcus sp.
           BL107]
          Length = 450

 Score = 39.7 bits (91), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 4/73 (5%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNLEDRDVLFI 111
           ++L +GP G GKT LAQ +A  L V F       + +AG    D+  +L  L  +  + +
Sbjct: 137 NILLIGPTGCGKTLLAQTLAEMLDVPFAVADATTLTEAGYVGEDVENILLRLLQKADMDV 196

Query: 112 DEIHRLSIIVEEI 124
           D+  R  I ++EI
Sbjct: 197 DQAQRGIIYIDEI 209


>gi|91787907|ref|YP_548859.1| ATP-dependent protease ATP-binding subunit ClpX [Polaromonas sp.
           JS666]
 gi|123165007|sp|Q12BY1|CLPX_POLSJ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|91697132|gb|ABE43961.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Polaromonas
           sp. JS666]
          Length = 421

 Score = 39.7 bits (91), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+            
Sbjct: 117 NILLIGPTGSGKTLLAQTLARTLNVPFVMADATTLTEAGYVGEDVENIIQKLLQSCNYEV 176

Query: 104 --EDRDVLFIDEIHRLS 118
               + +++IDEI ++S
Sbjct: 177 ERAQQGIVYIDEIDKIS 193


>gi|72547461|ref|XP_843233.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|323363747|emb|CBZ12753.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 361

 Score = 39.7 bits (91), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGDL---AALLTNLEDR---DV 108
           VL  GPPG GKT LA+ +A+ELG +F + +   I     GD    AA +  L  +    V
Sbjct: 138 VLLYGPPGTGKTLLARALAKELGCSFINVNTESIFSKWVGDTERNAAAVFTLAAKISPCV 197

Query: 109 LFIDEIHRL 117
           +F+DEI  L
Sbjct: 198 IFVDEIDSL 206


>gi|4506491|ref|NP_002907.1| replication factor C subunit 4 [Homo sapiens]
 gi|31881687|ref|NP_853551.1| replication factor C subunit 4 [Homo sapiens]
 gi|1703052|sp|P35249|RFC4_HUMAN RecName: Full=Replication factor C subunit 4; AltName:
          Full=Activator 1 37 kDa subunit; Short=A1 37 kDa
          subunit; AltName: Full=Activator 1 subunit 4; AltName:
          Full=Replication factor C 37 kDa subunit; Short=RF-C 37
          kDa subunit; Short=RFC37
 gi|1498256|gb|AAB09785.1| replication factor C, 37-kDa subunit [Homo sapiens]
 gi|16924323|gb|AAH17452.1| Replication factor C (activator 1) 4, 37kDa [Homo sapiens]
 gi|18645198|gb|AAH24022.1| Replication factor C (activator 1) 4, 37kDa [Homo sapiens]
 gi|22532479|gb|AAM97933.1| replication factor C (activator 1) 4 (37kD) [Homo sapiens]
 gi|30582813|gb|AAP35633.1| replication factor C (activator 1) 4, 37kDa [Homo sapiens]
 gi|49168606|emb|CAG38798.1| RFC4 [Homo sapiens]
 gi|60819475|gb|AAX36501.1| replication factor C 4 [synthetic construct]
 gi|61362396|gb|AAX42213.1| replication factor C [synthetic construct]
 gi|61362402|gb|AAX42214.1| replication factor C [synthetic construct]
 gi|61363130|gb|AAX42340.1| replication factor C 4 [synthetic construct]
 gi|119598575|gb|EAW78169.1| replication factor C (activator 1) 4, 37kDa, isoform CRA_a [Homo
          sapiens]
 gi|119598576|gb|EAW78170.1| replication factor C (activator 1) 4, 37kDa, isoform CRA_a [Homo
          sapiens]
 gi|123993605|gb|ABM84404.1| replication factor C (activator 1) 4, 37kDa [synthetic construct]
 gi|123993735|gb|ABM84469.1| replication factor C (activator 1) 4, 37kDa [synthetic construct]
 gi|123994261|gb|ABM84732.1| replication factor C (activator 1) 4, 37kDa [synthetic construct]
 gi|123999624|gb|ABM87354.1| replication factor C (activator 1) 4, 37kDa [synthetic construct]
 gi|261860114|dbj|BAI46579.1| replication factor C (activator 1) 4, 37kDa [synthetic construct]
          Length = 363

 Score = 39.7 bits (91), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+ ++E   Q E  + LK  +E A      L ++LF GPPG GKT+     AREL
Sbjct: 45 RPKCVDEVAFQEEVVAVLKKSLEGAD-----LPNLLFYGPPGTGKTSTILAAAREL 95


>gi|88800032|ref|ZP_01115602.1| ATP-dependent protease ATP-binding subunit [Reinekea sp. MED297]
 gi|88777158|gb|EAR08363.1| ATP-dependent protease ATP-binding subunit [Reinekea sp. MED297]
          Length = 392

 Score = 39.7 bits (91), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LA+ +AR L V F       + +AG +   + N+            
Sbjct: 81  NILLIGPTGSGKTLLAETMARLLNVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 140

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 141 DKAQRGIVYIDEIDKIS 157


>gi|322373965|ref|ZP_08048499.1| cell division protein FtsH [Streptococcus sp. C150]
 gi|321276931|gb|EFX54002.1| cell division protein FtsH [Streptococcus sp. C150]
          Length = 651

 Score = 39.7 bits (91), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLE--DRDV 108
           VL  GPPG GKT LA+ VA E  V F S SG       V   A  + +L  + +  +R +
Sbjct: 211 VLLEGPPGTGKTLLAKAVAGEADVPFFSISGSDFVEMFVGVGASRVRSLFEDAKKAERAI 270

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 271 IFIDEI 276


>gi|312864117|ref|ZP_07724352.1| ATP-dependent metallopeptidase HflB [Streptococcus vestibularis
           F0396]
 gi|311100349|gb|EFQ58557.1| ATP-dependent metallopeptidase HflB [Streptococcus vestibularis
           F0396]
          Length = 659

 Score = 39.7 bits (91), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLE--DRDV 108
           VL  GPPG GKT LA+ VA E  V F S SG       V   A  + +L  + +  +R +
Sbjct: 220 VLLEGPPGTGKTLLAKAVAGEADVPFFSISGSDFVEMFVGVGASRVRSLFEDAKKAERAI 279

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 280 IFIDEI 285


>gi|310828188|ref|YP_003960545.1| hypothetical protein ELI_2600 [Eubacterium limosum KIST612]
 gi|308739922|gb|ADO37582.1| hypothetical protein ELI_2600 [Eubacterium limosum KIST612]
          Length = 611

 Score = 39.7 bits (91), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 50/105 (47%), Gaps = 15/105 (14%)

Query: 25  RTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHV----LFVGPPGLGKTTLAQVVARE 77
           +T ++  GQ    EA + +  F+   K  A+   ++    L VGPPG GKT LA+ VA E
Sbjct: 169 KTFKDVAGQDEAKEALTEIVDFLHNPKKYADIGANLPKGALLVGPPGTGKTLLARAVAGE 228

Query: 78  LGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--VLFIDEI 114
             V F S SG    +      A  +  L     D+   ++FIDEI
Sbjct: 229 AKVPFFSISGSEFVEMFVGMGAAKVRDLFKQATDKAPCIVFIDEI 273


>gi|302835774|ref|XP_002949448.1| DNA replication factor C complex subunit 3 [Volvox carteri f.
          nagariensis]
 gi|300265275|gb|EFJ49467.1| DNA replication factor C complex subunit 3 [Volvox carteri f.
          nagariensis]
          Length = 355

 Score = 39.7 bits (91), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 12/70 (17%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
          RP+T ++F    +   NLK  + A         H LF GPPG GK TL   +        
Sbjct: 8  RPQTFDKFVIHKQIADNLKKLVAAGD-----FPHTLFYGPPGAGKKTLVMAL-------L 55

Query: 83 RSTSGPVIAK 92
          R+  GP + K
Sbjct: 56 RAIYGPGVEK 65


>gi|297790979|ref|XP_002863374.1| hypothetical protein ARALYDRAFT_494276 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297309209|gb|EFH39633.1| hypothetical protein ARALYDRAFT_494276 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 888

 Score = 39.7 bits (91), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 84/206 (40%), Gaps = 33/206 (16%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQ 72
           + + D+   + R   +  G  +    +  ++   K + +A   VL FVGPPG+GKT+LA 
Sbjct: 360 EHELDLKAAKERLDSDHYGLAKVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLAS 419

Query: 73  VVARELGVNF-RSTSGPVIAKA----------GDLAALLTNLEDR-----DVLFIDEIHR 116
            +A  LG  F R + G V  +A          G +   L +   R      V+ +DEI +
Sbjct: 420 SIAAALGRKFVRLSLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEIDK 479

Query: 117 LSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
               V         E+L P       D  +       +V  +LS+   +A   RV  +  
Sbjct: 480 TGSDVRGDPASALLEVLDPEQNKSFNDHYL-------NVPYDLSKVVFVATANRVQPIPP 532

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQR 194
           PL DR  + I L  Y  E+   I  R
Sbjct: 533 PLLDRMEL-IELPGYTQEEKLKIAMR 557


>gi|296112318|ref|YP_003626256.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Moraxella
           catarrhalis RH4]
 gi|295920012|gb|ADG60363.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Moraxella
           catarrhalis RH4]
          Length = 438

 Score = 39.7 bits (91), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LAQ +A+ L V F       + +AG +   + N+            
Sbjct: 139 NILLIGPTGSGKTLLAQTLAKMLDVPFAMADATTLTEAGYVGEDVENIVQKLLQAADYDV 198

Query: 104 --EDRDVLFIDEIHRLS 118
              ++ +++IDEI ++S
Sbjct: 199 QKAEKGIIYIDEIDKIS 215


>gi|296162408|ref|ZP_06845200.1| AAA ATPase central domain protein [Burkholderia sp. Ch1-1]
 gi|295887327|gb|EFG67153.1| AAA ATPase central domain protein [Burkholderia sp. Ch1-1]
          Length = 636

 Score = 39.7 bits (91), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 18/35 (51%), Positives = 23/35 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA 91
           +L VG PG+GKT LAQ +A E G NF S +G   +
Sbjct: 228 ILMVGGPGVGKTRLAQALAGECGANFISITGSYFS 262


>gi|293606967|ref|ZP_06689313.1| ATP-dependent metalloprotease FtsH [Achromobacter piechaudii ATCC
           43553]
 gi|292814633|gb|EFF73768.1| ATP-dependent metalloprotease FtsH [Achromobacter piechaudii ATCC
           43553]
          Length = 513

 Score = 39.7 bits (91), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 45/93 (48%), Gaps = 8/93 (8%)

Query: 34  VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK- 92
           VE    LK   E  +  A     VL VGPPG GKT LA+ VA E  V F S SG    + 
Sbjct: 74  VEIVDFLKNPQEYGRLGARIPKGVLLVGPPGTGKTLLAKAVAGEAAVPFFSISGSEFVEM 133

Query: 93  -AGDLAALLTNLEDR------DVLFIDEIHRLS 118
             G  AA + +L ++       ++FIDE+  L 
Sbjct: 134 FVGVGAARVRDLFEQARGQAPAIIFIDELDALG 166


>gi|291276455|ref|YP_003516227.1| membrane bound zinc metallopeptidase [Helicobacter mustelae 12198]
 gi|290963649|emb|CBG39481.1| membrane bound zinc metallopeptidase [Helicobacter mustelae 12198]
          Length = 631

 Score = 39.7 bits (91), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 34/67 (50%), Gaps = 10/67 (14%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI---------AKAGDLAALLTNLEDRD 107
           VL VGPPG GKT LA+ VA E  V F S SG            ++  DL  +    E   
Sbjct: 207 VLLVGPPGTGKTLLAKAVAGEANVPFFSMSGSSFIEMFVGLGASRVRDLFEMAKK-EAPS 265

Query: 108 VLFIDEI 114
           ++FIDEI
Sbjct: 266 MIFIDEI 272


>gi|261868694|ref|YP_003256616.1| ATP-dependent protease ATP-binding subunit ClpX [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261414026|gb|ACX83397.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 413

 Score = 39.7 bits (91), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD--------LAALLTNLE--- 104
           ++L +GP G GKT LA+ +AR L V F       + +AG         L  LL N +   
Sbjct: 112 NILLIGPTGSGKTLLAETMARMLNVPFAMADATTLTEAGYVGEDVENVLQKLLQNCDYDI 171

Query: 105 ---DRDVLFIDEIHRLS 118
              ++ +++IDEI +++
Sbjct: 172 ERAEQGIIYIDEIDKIT 188


>gi|238927153|ref|ZP_04658913.1| M41 family endopeptidase FtsH [Selenomonas flueggei ATCC 43531]
 gi|238884935|gb|EEQ48573.1| M41 family endopeptidase FtsH [Selenomonas flueggei ATCC 43531]
          Length = 650

 Score = 39.7 bits (91), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F + SG
Sbjct: 182 VLLFGPPGTGKTLLAKAVAGEAGVQFFTISG 212


>gi|226313809|ref|YP_002773703.1| hypothetical protein BBR47_42220 [Brevibacillus brevis NBRC 100599]
 gi|226096757|dbj|BAH45199.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 718

 Score = 39.7 bits (91), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 20/37 (54%), Positives = 26/37 (70%), Gaps = 1/37 (2%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVN-FRSTSGPVIAK 92
           +LF GPPG GKT  A+VVA+ELG+  F+     VI+K
Sbjct: 503 MLFAGPPGTGKTMSAEVVAKELGLELFKIDLSQVISK 539


>gi|224002124|ref|XP_002290734.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220974156|gb|EED92486.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 552

 Score = 39.7 bits (91), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRD------- 107
           HVL  GPPG GKT +A+ +A  +GV++   SG  ++  G D    + NL           
Sbjct: 306 HVLLYGPPGTGKTMVAKKLASVIGVDYALMSGGDVSPLGADAVTQIHNLFSWAKMSPRGV 365

Query: 108 VLFIDE 113
           +LFIDE
Sbjct: 366 ILFIDE 371


>gi|238692326|sp|B3EX35|KATL1_SORAR RecName: Full=Katanin p60 ATPase-containing subunit A-like 1;
           Short=Katanin p60 subunit A-like 1; AltName: Full=p60
           katanin-like 1
 gi|190195541|gb|ACE73638.1| katanin p60 ATPase-containing subunit A-like 1 (predicted) [Sorex
           araneus]
          Length = 490

 Score = 39.7 bits (91), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL VGPPG GKT LA+ VA E G  F + S   +
Sbjct: 244 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTL 277


>gi|153826369|ref|ZP_01979036.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae MZO-2]
 gi|149739847|gb|EDM54038.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae MZO-2]
          Length = 363

 Score = 39.7 bits (91), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LA+ +AR L V F       + +AG +   + N+            
Sbjct: 116 NILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 175

Query: 104 --EDRDVLFIDEIHRLS 118
              +R +++IDEI ++S
Sbjct: 176 AKAERGIVYIDEIDKIS 192


>gi|149408523|ref|XP_001512393.1| PREDICTED: similar to RAD17 homolog [Ornithorhynchus anatinus]
          Length = 679

 Score = 39.7 bits (91), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 20/85 (23%), Positives = 41/85 (48%), Gaps = 3/85 (3%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH---VLFVGPPGL 65
           +R++S+ +  +   RP T  E     +    ++ +++A   + +       +L  GPPG 
Sbjct: 82  NRSLSENETWVDKYRPETQSELAVHKKKIEEVETWLKAQILKGQPKQGGSILLLTGPPGC 141

Query: 66  GKTTLAQVVARELGVNFRSTSGPVI 90
           GKT   Q++ ++LG+  +    PV 
Sbjct: 142 GKTATLQILTKDLGIQVQEWINPVF 166


>gi|153820475|ref|ZP_01973142.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae NCTC 8457]
 gi|126508982|gb|EAZ71576.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae NCTC 8457]
          Length = 366

 Score = 39.7 bits (91), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LA+ +AR L V F       + +AG +   + N+            
Sbjct: 56  NILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 115

Query: 104 --EDRDVLFIDEIHRLS 118
              +R +++IDEI ++S
Sbjct: 116 AKAERGIVYIDEIDKIS 132


>gi|122890956|emb|CAM14036.1| novel protein (zgc:91969) [Danio rerio]
          Length = 666

 Score = 39.7 bits (91), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 33/76 (43%), Gaps = 3/76 (3%)

Query: 35  EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG 94
           E  S L+V ++ +K     L   L  GP G GKT   QV+A+ELG   +  S P      
Sbjct: 101 EVESWLRVHLDKSKKGGAIL---LLTGPSGCGKTATVQVLAKELGFQVQEWSNPSTTSQY 157

Query: 95  DLAALLTNLEDRDVLF 110
               L T   D D  F
Sbjct: 158 KTEDLFTQSFDPDSRF 173


>gi|308799531|ref|XP_003074546.1| FtsH-like protein Pftf precursor (ISS) [Ostreococcus tauri]
 gi|116000717|emb|CAL50397.1| FtsH-like protein Pftf precursor (ISS) [Ostreococcus tauri]
          Length = 636

 Score = 39.7 bits (91), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
            L VGPPG GKT LA+ +A E GV F S SG
Sbjct: 208 CLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 238


>gi|118393771|ref|XP_001029293.1| ATPase, AAA family protein [Tetrahymena thermophila]
 gi|89283465|gb|EAR81630.1| ATPase, AAA family protein [Tetrahymena thermophila SB210]
          Length = 702

 Score = 39.7 bits (91), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 19/32 (59%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA     NF S  GP
Sbjct: 463 VLLYGPPGCGKTLLAKAVANASKANFISVKGP 494


>gi|61367093|gb|AAX42951.1| replication factor C 4 [synthetic construct]
          Length = 364

 Score = 39.7 bits (91), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+ ++E   Q E  + LK  +E A      L ++LF GPPG GKT+     AREL
Sbjct: 45 RPKCVDEVAFQEEVVAVLKKSLEGAD-----LPNLLFYGPPGTGKTSTILAAAREL 95


>gi|30584245|gb|AAP36371.1| Homo sapiens replication factor C (activator 1) 4, 37kDa
          [synthetic construct]
 gi|54697188|gb|AAV38966.1| replication factor C (activator 1) 4, 37kDa [synthetic construct]
 gi|60653953|gb|AAX29669.1| replication factor C 4 [synthetic construct]
 gi|60654181|gb|AAX29783.1| replication factor C 4 [synthetic construct]
 gi|60830868|gb|AAX36948.1| replication factor C 4 [synthetic construct]
 gi|61367088|gb|AAX42950.1| replication factor C 4 [synthetic construct]
          Length = 364

 Score = 39.7 bits (91), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+ ++E   Q E  + LK  +E A      L ++LF GPPG GKT+     AREL
Sbjct: 45 RPKCVDEVAFQEEVVAVLKKSLEGAD-----LPNLLFYGPPGTGKTSTILAAAREL 95


>gi|84489878|ref|YP_448110.1| CdcH [Methanosphaera stadtmanae DSM 3091]
 gi|84373197|gb|ABC57467.1| CdcH [Methanosphaera stadtmanae DSM 3091]
          Length = 730

 Score = 39.7 bits (91), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 8/76 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DV 108
           VL  GPPG GKT LA+ VA E   +F   +GP I           L  L    E+    +
Sbjct: 241 VLLHGPPGTGKTLLAKAVANETNAHFIVINGPEIMSKYVGGSEEQLRELFEEAEENSPSI 300

Query: 109 LFIDEIHRLSIIVEEI 124
           +FIDE+  ++   EE+
Sbjct: 301 IFIDELDAIAPKREEV 316



 Score = 37.4 bits (85), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 19/32 (59%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  G PG GKT LA+ VA E   NF S  GP
Sbjct: 513 VLLTGVPGTGKTLLAKAVANESDANFISVKGP 544


>gi|134298005|ref|YP_001111501.1| ATP-dependent metalloprotease FtsH [Desulfotomaculum reducens MI-1]
 gi|134050705|gb|ABO48676.1| membrane protease FtsH catalytic subunit [Desulfotomaculum reducens
           MI-1]
          Length = 615

 Score = 39.7 bits (91), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 34/72 (47%), Gaps = 7/72 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVA 75
           R  T E+  G  E    L   ++  K+        A+    VL  GPPG GKT LA+ VA
Sbjct: 160 RKVTFEDVAGADEVKEELAEIVDFLKSPKKFNEIGAKIPKGVLLFGPPGTGKTLLARAVA 219

Query: 76  RELGVNFRSTSG 87
            E GV F S SG
Sbjct: 220 GEAGVPFFSISG 231


>gi|121605847|ref|YP_983176.1| ATP-dependent protease ATP-binding subunit ClpX [Polaromonas
           naphthalenivorans CJ2]
 gi|166214799|sp|A1VRH7|CLPX_POLNA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|120594816|gb|ABM38255.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Polaromonas
           naphthalenivorans CJ2]
          Length = 421

 Score = 39.7 bits (91), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+            
Sbjct: 117 NILLIGPTGSGKTLLAQTLARTLNVPFVMADATTLTEAGYVGEDVENIIQKLLQSCNYEV 176

Query: 104 --EDRDVLFIDEIHRLS 118
               + +++IDEI ++S
Sbjct: 177 DRAQQGIVYIDEIDKIS 193


>gi|326568951|gb|EGE19020.1| ATP-dependent protease ATP-binding subunit ClpX [Moraxella
           catarrhalis BC1]
          Length = 438

 Score = 39.7 bits (91), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LAQ +A+ L V F       + +AG +   + N+            
Sbjct: 139 NILLIGPTGSGKTLLAQTLAKMLDVPFAMADATTLTEAGYVGEDVENIVQKLLQAADYDV 198

Query: 104 --EDRDVLFIDEIHRLS 118
              ++ +++IDEI ++S
Sbjct: 199 QKAEKGIIYIDEIDKIS 215


>gi|326561828|gb|EGE12163.1| ATP-dependent protease ATP-binding subunit ClpX [Moraxella
           catarrhalis 7169]
 gi|326563374|gb|EGE13639.1| ATP-dependent protease ATP-binding subunit ClpX [Moraxella
           catarrhalis 12P80B1]
 gi|326571925|gb|EGE21930.1| ATP-dependent protease ATP-binding subunit ClpX [Moraxella
           catarrhalis BC8]
          Length = 438

 Score = 39.7 bits (91), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LAQ +A+ L V F       + +AG +   + N+            
Sbjct: 139 NILLIGPTGSGKTLLAQTLAKMLDVPFAMADATTLTEAGYVGEDVENIVQKLLQAADYDV 198

Query: 104 --EDRDVLFIDEIHRLS 118
              ++ +++IDEI ++S
Sbjct: 199 QKAEKGIIYIDEIDKIS 215


>gi|326437038|gb|EGD82608.1| hypothetical protein PTSG_11986 [Salpingoeca sp. ATCC 50818]
          Length = 1028

 Score = 39.7 bits (91), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 10/68 (14%)

Query: 57  VLFVGPPGLGKTTLAQVVARELG-----VNFRSTSGP-----VIAKAGDLAALLTNLEDR 106
           VL  GPPG+GKTTLA VVAR  G     +N      P      +  A  +  +L+  +  
Sbjct: 402 VLLAGPPGVGKTTLAHVVARHAGYATVEINASDDRSPDRLKQAVLDATQMREVLSAEKRP 461

Query: 107 DVLFIDEI 114
           + L +DEI
Sbjct: 462 NCLVLDEI 469


>gi|322497908|emb|CBZ32983.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 214

 Score = 39.7 bits (91), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 4/56 (7%)

Query: 42 VFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA 97
          +F+E A  R  +L H++  GPPG GKTTLA  +A   G+   + +    A AGD+A
Sbjct: 40 LFLEEAFRRPTSL-HIIITGPPGSGKTTLAAKLAAHYGITHVAATS---AAAGDMA 91


>gi|320163492|gb|EFW40391.1| ATPase [Capsaspora owczarzaki ATCC 30864]
          Length = 352

 Score = 39.7 bits (91), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-----RSTSGPVIAKAGDLAALLTNLEDR---DV 108
           VL  GPPG GKT LA+VVARE G  F      S       ++  L A +  L ++    +
Sbjct: 118 VLLHGPPGCGKTMLAKVVARESGCVFINLQIASLMEKWYGESQKLVAAVFTLAEKLQPAI 177

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 178 VFIDEI 183


>gi|301633000|ref|XP_002945567.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit
           clpX-like, partial [Xenopus (Silurana) tropicalis]
          Length = 350

 Score = 39.7 bits (91), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+         
Sbjct: 40  AKSNILLIGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASD 99

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDE+ ++S
Sbjct: 100 YKVERAQRGIVYIDEVDKIS 119


>gi|302770687|ref|XP_002968762.1| hypothetical protein SELMODRAFT_90486 [Selaginella
          moellendorffii]
 gi|300163267|gb|EFJ29878.1| hypothetical protein SELMODRAFT_90486 [Selaginella
          moellendorffii]
          Length = 326

 Score = 39.7 bits (91), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 8/69 (11%)

Query: 13 SQEDADISLL---RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
          S+E+ D+  +   RP+ L +  G  +A   L+V      AR   + +++F GPPG+GKTT
Sbjct: 3  SREEYDLPWVEKYRPQKLADVVGNQDAIGRLQVI-----ARDGNMPNLIFSGPPGIGKTT 57

Query: 70 LAQVVAREL 78
              +A E+
Sbjct: 58 CIMAMAHEM 66


>gi|295098773|emb|CBK87862.1| membrane protease FtsH catalytic subunit [Eubacterium cylindroides
           T2-87]
          Length = 655

 Score = 39.7 bits (91), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E  V F S SG       V   A  +  +  N +     +
Sbjct: 198 VLMVGPPGTGKTLLAKAVAGEANVPFFSISGSDFVEMFVGTGASRVRDMFKNAQKSAPCI 257

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 258 VFIDEI 263


>gi|262276277|ref|ZP_06054086.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Grimontia
           hollisae CIP 101886]
 gi|262220085|gb|EEY71401.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Grimontia
           hollisae CIP 101886]
          Length = 426

 Score = 39.7 bits (91), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LA+ +AR L V F       + +AG +   + N+            
Sbjct: 116 NILLIGPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 175

Query: 104 --EDRDVLFIDEIHRLS 118
              +R +++IDEI ++S
Sbjct: 176 AKAERGIVYIDEIDKIS 192


>gi|254497438|ref|ZP_05110235.1| hypothetical protein LDG_1842 [Legionella drancourtii LLAP12]
 gi|254353340|gb|EET12078.1| hypothetical protein LDG_1842 [Legionella drancourtii LLAP12]
          Length = 848

 Score = 39.7 bits (91), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 17/119 (14%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV-GPPGLGKTT 69
           NV+     +S+LRP    +F G  E  + +  F+++ K       H+L V GPPG+GKT 
Sbjct: 418 NVNDPYKILSILRPF---DFIGTSEKEAEVGSFLKSIKTNPHLEQHLLLVAGPPGVGKTE 474

Query: 70  LAQVVARELGVNFRSTSGPVIA-----------KAGDLAALLTNLEDRDVLFIDEIHRL 117
           + + +  + G  F+     V A           +   L A +  +++   LFIDEI  L
Sbjct: 475 ITKTIVNKEG--FKVIEYAVDAEEDKHINQHGYRISKLFAAVAQMKEPICLFIDEIDTL 531


>gi|303310016|ref|XP_003065021.1| ATP-dependent protease La, putative [Coccidioides posadasii C735
           delta SOWgp]
 gi|240104680|gb|EER22876.1| ATP-dependent protease La, putative [Coccidioides posadasii C735
           delta SOWgp]
          Length = 1067

 Score = 39.7 bits (91), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 76/193 (39%), Gaps = 38/193 (19%)

Query: 43  FIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA---- 97
           FI   K R      +L FVGPPG+GKT++ + +AR L   +   S   +    ++     
Sbjct: 558 FIAVGKLRGTVEGKILCFVGPPGVGKTSIGKSIARALNRQYYRFSVGGLTDVAEIKGHRR 617

Query: 98  ------------ALLTNLEDRDVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLM 137
                       AL     +  ++ IDE+ ++        S  + E+L P      LD  
Sbjct: 618 TYVGALPGRIIQALKKCQTENPLILIDEVDKIGRGHQGDPSSALLELLDPEQNSSFLDHY 677

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR--- 194
           +        V ++LS+   +        +  PL DR  I I L+ Y  ++   I +R   
Sbjct: 678 M-------DVPVDLSKVLFVCTANMTDTIPRPLLDRMEI-IELSGYVADEKMAIAERYLA 729

Query: 195 --GAKLTGLAVTD 205
               +L+GL   D
Sbjct: 730 PAAKELSGLKEVD 742


>gi|268679887|ref|YP_003304318.1| ATPase AAA [Sulfurospirillum deleyianum DSM 6946]
 gi|268617918|gb|ACZ12283.1| AAA ATPase central domain protein [Sulfurospirillum deleyianum DSM
           6946]
          Length = 553

 Score = 39.7 bits (91), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDR--DV 108
           VL VGPPG+GKT +A+ VA E  V F   SG    +      A  +  L +  +     +
Sbjct: 191 VLLVGPPGVGKTMIAKAVAGEASVPFFYQSGATFVQIYVGMGAKRVKELFSQAKAHAPSI 250

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 251 IFIDEI 256


>gi|227878372|ref|ZP_03996327.1| M41 family endopeptidase FtsH [Lactobacillus crispatus JV-V01]
 gi|256844415|ref|ZP_05549901.1| cell division protein [Lactobacillus crispatus 125-2-CHN]
 gi|256849197|ref|ZP_05554630.1| cell division protein [Lactobacillus crispatus MV-1A-US]
 gi|262047213|ref|ZP_06020171.1| cell division protein [Lactobacillus crispatus MV-3A-US]
 gi|293380362|ref|ZP_06626433.1| ATP-dependent metallopeptidase HflB [Lactobacillus crispatus 214-1]
 gi|295692144|ref|YP_003600754.1| cell division protein ftsh [Lactobacillus crispatus ST1]
 gi|312978415|ref|ZP_07790157.1| cell division protein FtsH [Lactobacillus crispatus CTV-05]
 gi|227862051|gb|EEJ69615.1| M41 family endopeptidase FtsH [Lactobacillus crispatus JV-V01]
 gi|256613493|gb|EEU18696.1| cell division protein [Lactobacillus crispatus 125-2-CHN]
 gi|256713973|gb|EEU28961.1| cell division protein [Lactobacillus crispatus MV-1A-US]
 gi|260572458|gb|EEX29020.1| cell division protein [Lactobacillus crispatus MV-3A-US]
 gi|290923045|gb|EFD99976.1| ATP-dependent metallopeptidase HflB [Lactobacillus crispatus 214-1]
 gi|295030250|emb|CBL49729.1| Cell division protein FtsH [Lactobacillus crispatus ST1]
 gi|310894758|gb|EFQ43830.1| cell division protein FtsH [Lactobacillus crispatus CTV-05]
          Length = 722

 Score = 39.7 bits (91), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 33/66 (50%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108
           VL  GPPG GKT LA+ VA E  V F S SG       V   A  +  L  N +     +
Sbjct: 229 VLLEGPPGTGKTLLARAVAGEANVPFYSISGSDFVEMFVGVGASRVRDLFNNAKKNAPSI 288

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 289 IFIDEI 294


>gi|255282855|ref|ZP_05347410.1| cell division protein FtsH [Bryantella formatexigens DSM 14469]
 gi|255266629|gb|EET59834.1| cell division protein FtsH [Bryantella formatexigens DSM 14469]
          Length = 641

 Score = 39.7 bits (91), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 7/69 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  GQ EA  +L+  ++  K         A+     L VGPPG GKT LA+ VA E 
Sbjct: 201 TFRDVAGQDEAKESLEEMVDYLKNPEKYRAIGAQQPKGALLVGPPGTGKTLLAKAVAGEA 260

Query: 79  GVNFRSTSG 87
           GV F   +G
Sbjct: 261 GVPFYHLTG 269


>gi|224824151|ref|ZP_03697259.1| ATP-dependent metalloprotease FtsH [Lutiella nitroferrum 2002]
 gi|224603570|gb|EEG09745.1| ATP-dependent metalloprotease FtsH [Lutiella nitroferrum 2002]
          Length = 652

 Score = 39.7 bits (91), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 36/69 (52%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VG PG GKT LA+ VA E GV F S SG       V   A  +  L    E++   +
Sbjct: 220 VLIVGAPGTGKTLLAKAVAGEAGVPFFSISGSEFVEMFVGVGAARVRDLFEQAEEKAPCI 279

Query: 109 LFIDEIHRL 117
           +FIDE+  L
Sbjct: 280 IFIDELDAL 288


>gi|149921666|ref|ZP_01910115.1| predicted ATP-dependent protease [Plesiocystis pacifica SIR-1]
 gi|149817510|gb|EDM76980.1| predicted ATP-dependent protease [Plesiocystis pacifica SIR-1]
          Length = 862

 Score = 39.7 bits (91), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 65/156 (41%), Gaps = 33/156 (21%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           + F GPPG+GKTTLA+ +A  LG  F R + G V   A              G L   + 
Sbjct: 368 LCFAGPPGVGKTTLAKSIAATLGREFVRISLGGVRDDAEIRGHRRTYVGALPGRLVQAMK 427

Query: 102 NLEDRD-VLFIDEIHRLS---------IIVEEILYPAMEDFQLDLMVGEGPSARSVKINL 151
                D V+ +DEI +LS           + E L P   D   D  +G       V  +L
Sbjct: 428 TAGTTDPVILLDEIDKLSGADLRGDPASALLETLDPEQNDAFEDHYLG-------VPYDL 480

Query: 152 SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           S+   I     +G +   L+DR  I I L+ Y + +
Sbjct: 481 SQVVFICTANELGAIPMVLRDRLEI-INLSGYTLAE 515


>gi|145590270|ref|YP_001152272.1| replication factor C large subunit [Pyrobaculum arsenaticum DSM
          13514]
 gi|158514159|sp|A4WGV3|RFCL_PYRAR RecName: Full=Replication factor C large subunit; Short=RFC large
          subunit; AltName: Full=Clamp loader large subunit
 gi|145282038|gb|ABP49620.1| AAA ATPase, central domain protein [Pyrobaculum arsenaticum DSM
          13514]
          Length = 422

 Score = 39.7 bits (91), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 34/72 (47%), Gaps = 15/72 (20%)

Query: 23 RPRTLEEFTGQVEACSNLKVFI-------------EAAKARAEALDH--VLFVGPPGLGK 67
          RP++  +   Q EA   L  +I              A K   E LD   VL  GPPG+GK
Sbjct: 10 RPKSFADVVDQEEAKYVLASWICARFRAPKDFCTRWAKKKDKEILDARAVLLAGPPGVGK 69

Query: 68 TTLAQVVARELG 79
          TTL   +ARE+G
Sbjct: 70 TTLIHALAREIG 81


>gi|114052583|ref|NP_001039359.1| replication factor C subunit 4 [Bos taurus]
 gi|88954368|gb|AAI14042.1| Replication factor C (activator 1) 4, 37kDa [Bos taurus]
 gi|296491286|gb|DAA33349.1| replication factor C 4 [Bos taurus]
          Length = 337

 Score = 39.7 bits (91), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+ ++E   Q E  + LK  +E A      L ++LF GPPG GKT+     AREL
Sbjct: 45 RPKCVDEVAFQEEVVAVLKKSLEGAD-----LPNLLFYGPPGTGKTSTILAAAREL 95


>gi|59711405|ref|YP_204181.1| DNA-binding ATP-dependent protease Lon (La) [Vibrio fischeri ES114]
 gi|59479506|gb|AAW85293.1| DNA-binding ATP-dependent protease Lon (La) [Vibrio fischeri ES114]
          Length = 784

 Score = 39.7 bits (91), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 77/164 (46%), Gaps = 28/164 (17%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           +  VGPPG+GKT+L Q +A+  G  + R   G V  +A              G L   L+
Sbjct: 351 LCLVGPPGVGKTSLGQSIAKATGRKYTRMALGGVRDEAEIRGHRRTYIGSLPGKLIQKLS 410

Query: 102 NLEDRDVLF-IDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARS-----VKINLSRFT 155
            +E ++ LF +DEI ++S  +      A+    L+++  E  SA S     V  +LS   
Sbjct: 411 KVEVKNPLFLLDEIDKMSSDMRGDPASAL----LEVLDPEQNSAFSDHYLEVDYDLSDVM 466

Query: 156 LIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199
            +A +  +  +  PL DR  + IRL+ Y  ED K  + +   LT
Sbjct: 467 FVATSNSMN-IPGPLLDRMEV-IRLSGY-TEDEKLNIAKNHLLT 507


>gi|48097300|ref|XP_393747.1| PREDICTED: replication factor C subunit 5-like [Apis mellifera]
          Length = 328

 Score = 39.7 bits (91), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 5/73 (6%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
          RP+ L++     E    +  FI+        L H+LF GPPG GKT+     AR+L  + 
Sbjct: 18 RPKKLDDLISHEEIIKTINKFIDE-----NLLPHLLFYGPPGTGKTSTILACARKLYTSA 72

Query: 83 RSTSGPVIAKAGD 95
          +  S  +   A D
Sbjct: 73 QFNSMVLEMNASD 85


>gi|326330781|ref|ZP_08197082.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Nocardioidaceae bacterium Broad-1]
 gi|325951311|gb|EGD43350.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Nocardioidaceae bacterium Broad-1]
          Length = 430

 Score = 39.7 bits (91), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------ED 105
           A  ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+        D
Sbjct: 120 AKSNILVIGPTGCGKTYLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAAD 179

Query: 106 RDV-------LFIDEIHRLS 118
            DV       ++IDEI +++
Sbjct: 180 YDVKKAETGIIYIDEIDKVA 199


>gi|311068266|ref|YP_003973189.1| stage V sporulation protein K [Bacillus atrophaeus 1942]
 gi|310868783|gb|ADP32258.1| stage V sporulation protein K [Bacillus atrophaeus 1942]
          Length = 321

 Score = 39.7 bits (91), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 75/177 (42%), Gaps = 36/177 (20%)

Query: 39  NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR-ELGVNFRSTSGPVIAKAGDLA 97
           N K   +  KA  +AL H++F G PG GKTT+A+++ R    +N  S    + A+  DL 
Sbjct: 77  NQKRAEQGLKAGKQAL-HMMFKGNPGTGKTTVARLIGRLFFEMNVLSKGHLIEAERADLV 135

Query: 98  ALL---TNLEDRD--------VLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMV 138
                 T  + RD        +LFIDE + L+   E        + L   MED Q + ++
Sbjct: 136 GEYIGHTAQKTRDLIKKSLGGILFIDEAYSLARGGEKDFGKEAIDTLVKHMEDKQHEFIL 195

Query: 139 GEGPSARSVKINLSRFTLIAATTRVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQR 194
                +R +   LS               NP LQ RF I I    Y +  L  I +R
Sbjct: 196 ILAGYSREMDHFLS--------------LNPGLQSRFPISIDFPDYSVSQLMDIAKR 238


>gi|308271900|emb|CBX28508.1| ATP-dependent Clp protease ATP-binding subunit clpX [uncultured
           Desulfobacterium sp.]
          Length = 414

 Score = 39.7 bits (91), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104
           ++L +GP G GKT +AQ +AR L V F       + +AG +         +LL N +   
Sbjct: 110 NILLIGPTGTGKTLMAQTLARFLNVPFTIADATSLTEAGYVGEDVENIILSLLQNADYDV 169

Query: 105 ---DRDVLFIDEIHRLS 118
               R +++IDEI +++
Sbjct: 170 EKCKRGIVYIDEIDKIA 186


>gi|302768635|ref|XP_002967737.1| hypothetical protein SELMODRAFT_88110 [Selaginella moellendorffii]
 gi|300164475|gb|EFJ31084.1| hypothetical protein SELMODRAFT_88110 [Selaginella moellendorffii]
          Length = 641

 Score = 39.7 bits (91), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA-----KAGDLAALLTNLEDR---DV 108
           +L  GPPG GKT LA+ VA E G NF + S   IA     +A      +  L  +    V
Sbjct: 375 LLLFGPPGTGKTMLAKAVATEAGANFINISMSTIASKWFGEAEKYVKAVFTLASKISPSV 434

Query: 109 LFIDEI 114
           +F+DE+
Sbjct: 435 VFVDEV 440


>gi|297672721|ref|XP_002814437.1| PREDICTED: replication factor C subunit 4-like isoform 1 [Pongo
          abelii]
 gi|297672723|ref|XP_002814438.1| PREDICTED: replication factor C subunit 4-like isoform 2 [Pongo
          abelii]
          Length = 363

 Score = 39.7 bits (91), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+ ++E   Q E  + LK  +E A      L ++LF GPPG GKT+     AREL
Sbjct: 45 RPKCVDEVAFQEEVVAVLKKSLEGAD-----LPNLLFYGPPGTGKTSTILAAAREL 95


>gi|296203643|ref|XP_002748989.1| PREDICTED: katanin p60 ATPase-containing subunit A-like 1 isoform 1
           [Callithrix jacchus]
 gi|296203645|ref|XP_002748990.1| PREDICTED: katanin p60 ATPase-containing subunit A-like 1 isoform 2
           [Callithrix jacchus]
          Length = 490

 Score = 39.7 bits (91), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL VGPPG GKT LA+ VA E G  F + S   +
Sbjct: 244 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTL 277


>gi|294776213|ref|ZP_06741698.1| recombination factor protein RarA [Bacteroides vulgatus PC510]
 gi|294449896|gb|EFG18411.1| recombination factor protein RarA [Bacteroides vulgatus PC510]
          Length = 376

 Score = 39.7 bits (91), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 10/101 (9%)

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRL 117
           +GKTTLAQ++A +L   F + S  V +   D+  ++          +   +LFIDEIHR 
Sbjct: 1   MGKTTLAQIIANKLETPFYTLSA-VTSGVKDVRDVIEKARSNRFFSQASPILFIDEIHRF 59

Query: 118 SIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTL 156
           S   ++ L  A+E   + L+    E PS   ++  LSR  L
Sbjct: 60  SKSQQDSLLGAVETGVVTLIGATTENPSFEVIRPLLSRCQL 100


>gi|292669436|ref|ZP_06602862.1| ATP-dependent metalloprotease FtsH [Selenomonas noxia ATCC 43541]
 gi|292648889|gb|EFF66861.1| ATP-dependent metalloprotease FtsH [Selenomonas noxia ATCC 43541]
          Length = 649

 Score = 39.7 bits (91), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F + SG
Sbjct: 181 VLLFGPPGTGKTLLAKAVAGEAGVQFFTISG 211


>gi|283795863|ref|ZP_06345016.1| cell division protein FtsH [Clostridium sp. M62/1]
 gi|291076494|gb|EFE13858.1| cell division protein FtsH [Clostridium sp. M62/1]
 gi|295115763|emb|CBL36610.1| ATP-dependent metalloprotease FtsH [butyrate-producing bacterium
           SM4/1]
          Length = 699

 Score = 39.7 bits (91), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 35/69 (50%), Gaps = 7/69 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIE-------AAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G+ EA  +LK  ++         K  A+     L VGPPG GKT LA+ VA E 
Sbjct: 181 TFKDVAGEDEAKESLKEIVDFLHNPGKYTKIGAKLPKGALLVGPPGTGKTLLAKAVAGEA 240

Query: 79  GVNFRSTSG 87
            V F S SG
Sbjct: 241 KVPFFSLSG 249


>gi|283852532|ref|ZP_06369800.1| ATP-dependent protease La [Desulfovibrio sp. FW1012B]
 gi|283572140|gb|EFC20132.1| ATP-dependent protease La [Desulfovibrio sp. FW1012B]
          Length = 838

 Score = 39.7 bits (91), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 92/222 (41%), Gaps = 49/222 (22%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA---GDLAALLTNLEDR------ 106
           + FVGPPG+GKT+L + +AR LG  F R + G +  +A   G     + ++  R      
Sbjct: 388 LCFVGPPGVGKTSLGRSIARALGRKFVRMSLGGMRDEAEIRGHRRTYIGSMPGRVIQSIK 447

Query: 107 ------DVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152
                  V+ +DEI ++        S  + E+L P  ++F             +V  +LS
Sbjct: 448 QAGTRNPVIMLDEIDKVGSDFRGDPSSALLEVLDPE-QNFSF------SDHYLNVPFDLS 500

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFY-EIEDLKT----IVQRGAKLTGLAVTDEA 207
           +   I     +  +  PL DR  + IRL  Y E E +K     I+ R  +  GLA  D  
Sbjct: 501 KVMFICTANILDTIPAPLLDRMEL-IRLPGYTEQEKIKIARRYILPRQIEENGLAKDDMV 559

Query: 208 ACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
             +              L R +RD+   A  + + RE+   A
Sbjct: 560 LSDQV------------LARIIRDYTREAGLRNLEREVGSVA 589


>gi|262369922|ref|ZP_06063249.1| ATP-dependent protease Clp [Acinetobacter johnsonii SH046]
 gi|262314961|gb|EEY96001.1| ATP-dependent protease Clp [Acinetobacter johnsonii SH046]
          Length = 438

 Score = 39.7 bits (91), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------ED 105
           A  ++L VGP G GKT LAQ +AR L V F       + +AG +   + N+        D
Sbjct: 113 AKSNILLVGPTGSGKTLLAQTMARLLDVPFAMADATTLTEAGYVGEDVENIVQKLLQKAD 172

Query: 106 RDV-------LFIDEIHRLS 118
            DV       ++IDEI +++
Sbjct: 173 YDVEKAQKGIIYIDEIDKIT 192


>gi|254977185|ref|ZP_05273657.1| cell division protein [Clostridium difficile QCD-66c26]
 gi|255094514|ref|ZP_05323992.1| cell division protein [Clostridium difficile CIP 107932]
 gi|255102771|ref|ZP_05331748.1| cell division protein [Clostridium difficile QCD-63q42]
 gi|255308592|ref|ZP_05352763.1| cell division protein [Clostridium difficile ATCC 43255]
 gi|255316266|ref|ZP_05357849.1| cell division protein [Clostridium difficile QCD-76w55]
 gi|255518927|ref|ZP_05386603.1| cell division protein [Clostridium difficile QCD-97b34]
 gi|255652106|ref|ZP_05399008.1| cell division protein [Clostridium difficile QCD-37x79]
 gi|255657509|ref|ZP_05402918.1| cell division protein [Clostridium difficile QCD-23m63]
 gi|306521840|ref|ZP_07408187.1| cell division protein [Clostridium difficile QCD-32g58]
          Length = 656

 Score = 39.7 bits (91), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 30/54 (55%), Gaps = 3/54 (5%)

Query: 34  VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           V+   N K +IE     A     +L VGPPG GKT L++ VA E GV F S SG
Sbjct: 179 VDFLKNPKKYIELG---ARIPKGMLMVGPPGTGKTYLSRAVAGEAGVPFFSISG 229


>gi|194040499|ref|XP_001928701.1| PREDICTED: katanin p60 ATPase-containing subunit A-like 1-like [Sus
           scrofa]
          Length = 490

 Score = 39.7 bits (91), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL VGPPG GKT LA+ VA E G  F + S   +
Sbjct: 244 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTL 277


>gi|159467843|ref|XP_001692101.1| DNA damage repair and chromosome cohesion protein [Chlamydomonas
           reinhardtii]
 gi|158278828|gb|EDP04591.1| DNA damage repair and chromosome cohesion protein [Chlamydomonas
           reinhardtii]
          Length = 1490

 Score = 39.7 bits (91), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 21/36 (58%), Positives = 24/36 (66%), Gaps = 1/36 (2%)

Query: 47  AKARAEALDHVLFVG-PPGLGKTTLAQVVARELGVN 81
           AKA     + VL +G PPGLGKTTLA VVAR  G +
Sbjct: 672 AKADTRPQNKVLLIGGPPGLGKTTLAHVVARHCGYH 707


>gi|156545181|ref|XP_001603491.1| PREDICTED: similar to conserved hypothetical protein [Nasonia
           vitripennis]
          Length = 913

 Score = 39.7 bits (91), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 17/24 (70%), Positives = 17/24 (70%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVN 81
           L  GPPGLGKTTLA V AR  G N
Sbjct: 331 LLTGPPGLGKTTLAHVAARHAGYN 354


>gi|126432667|ref|YP_001068358.1| ATPase central domain-containing protein [Mycobacterium sp. JLS]
 gi|126232467|gb|ABN95867.1| AAA ATPase, central domain protein [Mycobacterium sp. JLS]
          Length = 573

 Score = 39.7 bits (91), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 2/72 (2%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           RE LL    ++ D  I L R +  E+      A    K+        A+   H++F GPP
Sbjct: 279 RERLLEEAQAELDRQIGLSRVK--EQIEAYRAATQMAKIRAARGMKVAQTSKHMIFAGPP 336

Query: 64  GLGKTTLAQVVA 75
           G GKTT+A+VVA
Sbjct: 337 GTGKTTIARVVA 348


>gi|89894329|ref|YP_517816.1| hypothetical protein DSY1583 [Desulfitobacterium hafniense Y51]
 gi|89333777|dbj|BAE83372.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 325

 Score = 39.7 bits (91), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 82/196 (41%), Gaps = 42/196 (21%)

Query: 40  LKVFIEAAKAR------AEALD-HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI-A 91
           ++ +IE  K R      AE L  H++F G PG GKTT+A+++ R          G +I  
Sbjct: 78  IQAYIEIQKRRTREKLVAEPLVLHMIFRGNPGTGKTTVARLIGRLFKEMEVLQKGHIIEC 137

Query: 92  KAGDLAALL---TNLEDRD--------VLFIDEIHRLSIIVE--------EILYPAMEDF 132
           +  DL       T  + RD        +LFIDE + L+   E        + L  AMED 
Sbjct: 138 ERADLVGEYIGHTAQKTRDMVKKALGGILFIDEAYSLARGGEKDFGKEAIDALVKAMEDH 197

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP-LQDRFGIPIRLNFYEIEDLKTI 191
           + DL++         K  +  F          L TNP L+ RF I I    Y IE+L +I
Sbjct: 198 KTDLIL----ILAGYKHEMEWF----------LQTNPGLRSRFPIHIDFPDYSIEELLSI 243

Query: 192 VQRGAKLTGLAVTDEA 207
                K      T EA
Sbjct: 244 GDSMLKTRQYQFTAEA 259


>gi|83768030|dbj|BAE58169.1| unnamed protein product [Aspergillus oryzae]
          Length = 719

 Score = 39.7 bits (91), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108
           VL VGPPG GKT LA+ VA E GV F   SG       V   A  +  L T    +   +
Sbjct: 284 VLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEVYVGVGAKRVRELFTQARSKAPAI 343

Query: 109 LFIDEI 114
           +FIDE+
Sbjct: 344 IFIDEL 349


>gi|56751592|ref|YP_172293.1| ATP-dependent protease ATP-binding subunit ClpX [Synechococcus
           elongatus PCC 6301]
 gi|81301335|ref|YP_401543.1| ATP-dependent protease ATP-binding subunit ClpX [Synechococcus
           elongatus PCC 7942]
 gi|61211388|sp|Q5N1P7|CLPX_SYNP6 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|93141243|sp|O34126|CLPX_SYNE7 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|56686551|dbj|BAD79773.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Synechococcus
           elongatus PCC 6301]
 gi|81170216|gb|ABB58556.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Synechococcus
           elongatus PCC 7942]
          Length = 449

 Score = 39.7 bits (91), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 70/174 (40%), Gaps = 33/174 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LAQ +A+ L V F       + +AG +   + N+            
Sbjct: 140 NILLIGPTGCGKTLLAQTLAKLLDVPFAVADATTLTEAGYVGEDVENILLRLLQVADLDI 199

Query: 104 --EDRDVLFIDEIHRLS------IIVEEILYPAMEDFQLDLMVG-----------EGPSA 144
               R +++IDEI +++       I  ++    ++   L ++ G           + P  
Sbjct: 200 EEAQRGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTIANVPPQGGRKHPYQ 259

Query: 145 RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKL 198
             ++I+      I     VGL    L DR      + F   E+ KT  QR A +
Sbjct: 260 DCIQIDTRNILFICGGAFVGL--EKLVDRRLGKKSIGFVHPEESKTKEQRAAAI 311


>gi|47214930|emb|CAG01152.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 357

 Score = 39.7 bits (91), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 12/68 (17%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
          RP+ ++E   Q E  + LK  +E A      L ++LF GPPG GKT+     AREL    
Sbjct: 40 RPKCVDEVAFQEEVVAVLKKSLEGAD-----LPNLLFYGPPGTGKTSTILAAAREL---- 90

Query: 83 RSTSGPVI 90
              GPV+
Sbjct: 91 ---YGPVL 95


>gi|323466767|gb|ADX70454.1| caseinolytic peptidase-like protein X [Lactobacillus helveticus
           H10]
          Length = 424

 Score = 39.7 bits (91), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 14/83 (16%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD--------LAALLTNLE--- 104
           ++  +GP G GKT LAQ +AR L V F       + +AG         L  LL N +   
Sbjct: 111 NIAMIGPTGSGKTYLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDL 170

Query: 105 ---DRDVLFIDEIHRLSIIVEEI 124
               R +++IDEI ++S   E +
Sbjct: 171 ERAQRGIIYIDEIDKISKKSENV 193


>gi|322495372|emb|CBZ30676.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 361

 Score = 39.7 bits (91), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGDL---AALLTNLEDR---DV 108
           VL  GPPG GKT LA+ +A+ELG +F + +   I     GD    AA +  L  +    V
Sbjct: 138 VLLYGPPGTGKTLLARALAKELGCSFINVNTESIFSKWVGDTERNAAAVFTLAAKISPCV 197

Query: 109 LFIDEIHRL 117
           +F+DEI  L
Sbjct: 198 IFVDEIDSL 206


>gi|321456941|gb|EFX68037.1| hypothetical protein DAPPUDRAFT_301682 [Daphnia pulex]
          Length = 356

 Score = 39.7 bits (91), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RPRT++E + Q E  + L+  ++ A      L ++LF GPPG GKT+     AR+L
Sbjct: 41 RPRTIDEVSYQEEVVAVLQKSLQGAD-----LPNLLFYGPPGTGKTSTILAAARDL 91


>gi|297171040|gb|ADI22053.1| hypothetical protein [uncultured myxobacterium HF0200_08J13]
          Length = 1815

 Score = 39.7 bits (91), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 25/42 (59%)

Query: 50   RAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA 91
            R + +  +L V PPG GKTTL + +A  LG+ F   +GP + 
Sbjct: 1273 RTDLMGLLLLVSPPGYGKTTLMEYIANRLGLIFMKINGPALG 1314


>gi|317968360|ref|ZP_07969750.1| ATP-dependent protease ATP-binding subunit ClpX [Synechococcus sp.
           CB0205]
          Length = 451

 Score = 39.7 bits (91), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 4/73 (5%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNLEDRDVLFI 111
           ++L +GP G GKT LAQ +A  L V F       + +AG    D+  +L  L  +  L +
Sbjct: 138 NILLIGPTGCGKTLLAQTLAELLDVPFAVADATTLTEAGYVGEDVENILLRLLQKADLDV 197

Query: 112 DEIHRLSIIVEEI 124
           D+  R  I ++EI
Sbjct: 198 DQAQRGIIYIDEI 210


>gi|315656174|ref|ZP_07909065.1| cell division protein FtsH [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|315493176|gb|EFU82776.1| cell division protein FtsH [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 759

 Score = 39.7 bits (91), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 223 VLLYGPPGTGKTLLARAVAGEAGVPFFSMSG 253


>gi|307297687|ref|ZP_07577493.1| ATP-dependent metalloprotease FtsH [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306916947|gb|EFN47329.1| ATP-dependent metalloprotease FtsH [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 633

 Score = 39.7 bits (91), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108
           +L VGPPG GKT LA+ VA E GV F   SG       V   A  +  L T  +     +
Sbjct: 198 LLLVGPPGTGKTLLARAVAGEAGVPFFFISGSDFVELFVGVGAARVRDLFTQAKSSAPSI 257

Query: 109 LFIDEI 114
           LFIDEI
Sbjct: 258 LFIDEI 263


>gi|302539068|ref|ZP_07291410.1| ATPase [Streptomyces sp. C]
 gi|302447963|gb|EFL19779.1| ATPase [Streptomyces sp. C]
          Length = 404

 Score = 39.7 bits (91), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 18/30 (60%), Positives = 21/30 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTS 86
           +L  GPPG GKT +A+ VA ELG NF S S
Sbjct: 160 LLLYGPPGCGKTFIARAVAGELGANFLSVS 189


>gi|302690806|ref|XP_003035082.1| hypothetical protein SCHCODRAFT_50055 [Schizophyllum commune H4-8]
 gi|300108778|gb|EFJ00180.1| hypothetical protein SCHCODRAFT_50055 [Schizophyllum commune H4-8]
          Length = 992

 Score = 39.7 bits (91), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 17/32 (53%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT LA+ VA    +NF S  GP
Sbjct: 720 ILLYGPPGTGKTLLAKAVATSCSLNFFSVKGP 751


>gi|296392854|ref|YP_003657738.1| ATP-dependent metalloprotease FtsH [Segniliparus rotundus DSM
           44985]
 gi|296180001|gb|ADG96907.1| ATP-dependent metalloprotease FtsH [Segniliparus rotundus DSM
           44985]
          Length = 698

 Score = 39.7 bits (91), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 33/59 (55%), Gaps = 6/59 (10%)

Query: 34  VEACSNLKVFIEAAKARAEALDH-----VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VE    +K F++   AR +AL       VL  GPPG GKT LA+ VA E GV F + SG
Sbjct: 179 VEELYEIKDFLQN-PARYQALGAKIPRGVLLFGPPGTGKTLLARAVAGEAGVPFFTISG 236


>gi|256787755|ref|ZP_05526186.1| ATP-dependent protease ATP-binding subunit ClpX [Streptomyces
           lividans TK24]
 gi|289771642|ref|ZP_06531020.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
           lividans TK24]
 gi|289701841|gb|EFD69270.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
           lividans TK24]
          Length = 428

 Score = 39.7 bits (91), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 59/133 (44%), Gaps = 35/133 (26%)

Query: 21  LLRPRTLEEF-----TGQVEACSNLKVFIE------------AAKARAEALD----HVLF 59
           L +PR + EF      GQ  A   L V +              A+ R +A++    ++L 
Sbjct: 61  LPKPREIYEFLESYVVGQEAAKKALSVAVYNHYKRVQAGENGGAQGREDAIELAKSNILL 120

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDV---- 108
           +GP G GKT LAQ +AR L V F       + +AG +   + N+        D DV    
Sbjct: 121 LGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKKAE 180

Query: 109 ---LFIDEIHRLS 118
              ++IDEI +++
Sbjct: 181 TGIIYIDEIDKVA 193


>gi|224438185|ref|ZP_03659120.1| membrane bound zinc metallopeptidase [Helicobacter cinaedi CCUG
           18818]
 gi|313144630|ref|ZP_07806823.1| membrane bound zinc metallopeptidase [Helicobacter cinaedi CCUG
           18818]
 gi|313129661|gb|EFR47278.1| membrane bound zinc metallopeptidase [Helicobacter cinaedi CCUG
           18818]
          Length = 631

 Score = 39.7 bits (91), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E  V F S SG
Sbjct: 207 VLLVGPPGTGKTLLAKAVAGEANVPFFSMSG 237


>gi|224089933|ref|XP_002308870.1| predicted protein [Populus trichocarpa]
 gi|222854846|gb|EEE92393.1| predicted protein [Populus trichocarpa]
          Length = 1042

 Score = 39.7 bits (91), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 23/34 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL  GPPG GKT+LA++   + GVN  S +GP I
Sbjct: 443 VLLHGPPGTGKTSLARLCVIDAGVNLFSVNGPEI 476



 Score = 38.9 bits (89), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 8/72 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           +L  GPPG  KT +A+ VA + G+NF +  GP +     G+    + +L  +       +
Sbjct: 795 ILMFGPPGCSKTLMARAVASKAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSI 854

Query: 109 LFIDEIHRLSII 120
           +F DEI  L++I
Sbjct: 855 IFFDEIDGLAVI 866


>gi|189464151|ref|ZP_03012936.1| hypothetical protein BACINT_00487 [Bacteroides intestinalis DSM
           17393]
 gi|189437941|gb|EDV06926.1| hypothetical protein BACINT_00487 [Bacteroides intestinalis DSM
           17393]
          Length = 616

 Score = 39.7 bits (91), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 10/110 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP T E   GQ    + LK  I   K     L H  LF GP G+GKTT A++ A+ +   
Sbjct: 12  RPTTFESVVGQRALTTTLKNAIATGK-----LAHAYLFCGPRGVGKTTCARIFAKTINCM 66

Query: 82  FRSTSGPVIAKAGDLAAL----LTNLEDRDVLFIDEIHRLSIIVEEILYP 127
             +  G    +     A       N+ + D    + +  +  +VE++  P
Sbjct: 67  SPTAEGEACNQCESCTAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIP 116


>gi|154321103|ref|XP_001559867.1| hypothetical protein BC1G_01426 [Botryotinia fuckeliana B05.10]
 gi|150851964|gb|EDN27156.1| hypothetical protein BC1G_01426 [Botryotinia fuckeliana B05.10]
          Length = 551

 Score = 39.7 bits (91), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E GV F   SG       V   A  +  L T  + +   +
Sbjct: 333 VLLVGPPGTGKTLLARAVAGEAGVPFFFMSGSEFDEIYVGVGAKRVRELFTAAKGKSPAI 392

Query: 109 LFIDEI 114
           +FIDE+
Sbjct: 393 IFIDEL 398


>gi|149635753|ref|XP_001508568.1| PREDICTED: similar to Katanin p60 subunit A-like 1 [Ornithorhynchus
           anatinus]
          Length = 485

 Score = 39.7 bits (91), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL VGPPG GKT LA+ VA E G  F + S   +
Sbjct: 239 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTL 272


>gi|149192522|ref|ZP_01870700.1| ATP-dependent protease ATP-binding subunit [Vibrio shilonii AK1]
 gi|148833642|gb|EDL50701.1| ATP-dependent protease ATP-binding subunit [Vibrio shilonii AK1]
          Length = 417

 Score = 39.7 bits (91), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LA+ +AR L V F       + +AG +   + N+            
Sbjct: 107 NILLIGPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 166

Query: 104 --EDRDVLFIDEIHRLS 118
              +R +++IDEI ++S
Sbjct: 167 AKAERGIVYIDEIDKIS 183


>gi|126668932|ref|ZP_01739873.1| ATP-dependent protease ATP-binding subunit [Marinobacter sp. ELB17]
 gi|126626595|gb|EAZ97251.1| ATP-dependent protease ATP-binding subunit [Marinobacter sp. ELB17]
          Length = 427

 Score = 39.7 bits (91), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LA+ +AR L V F       + +AG +   + N+            
Sbjct: 117 NILLIGPTGSGKTLLAETLARVLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDV 176

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 177 EKAQRGIVYIDEIDKIS 193


>gi|118430998|ref|NP_147150.2| TATA box-binding protein-interacting protein TIP49 [Aeropyrum
          pernix K1]
 gi|116062324|dbj|BAA79281.2| TATA box-binding protein-interacting protein TIP49 [Aeropyrum
          pernix K1]
          Length = 449

 Score = 39.7 bits (91), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 26/50 (52%)

Query: 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
            GQ EA     V +E  +        +L VGPPG GKT LA  +ARELG
Sbjct: 39 LVGQEEAREAAGVIVEMVREGRLGGRGILIVGPPGTGKTALAIAIARELG 88


>gi|91200785|emb|CAJ73838.1| strongly similar to cell division protein FtsH [Candidatus Kuenenia
           stuttgartiensis]
          Length = 623

 Score = 39.7 bits (91), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL +G PG GKT LA+ VA E GV+F S SG
Sbjct: 205 VLLIGSPGTGKTLLAKAVAGEAGVHFFSISG 235


>gi|118462751|ref|YP_879667.1| DNA polymerase III subunits gamma/tau [Mycobacterium avium 104]
 gi|48928138|gb|AAT47747.1| probable DNA polymerase III gamma [Mycobacterium avium]
 gi|118164038|gb|ABK64935.1| DNA polymerase III gamma/tau subunit [Mycobacterium avium 104]
          Length = 608

 Score = 39.7 bits (91), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 6/68 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
          RP T  E  GQ      L + +EA +     ++H  LF GP G GKT+ A+++AR L   
Sbjct: 8  RPATFAEVVGQEHVTEPLSIALEAGR-----INHAYLFSGPRGCGKTSSARILARSLNCV 62

Query: 82 FRSTSGPV 89
             T+ P 
Sbjct: 63 QGPTATPC 70


>gi|332818666|ref|XP_003310208.1| PREDICTED: replication factor C subunit 4 isoform 1 [Pan
          troglodytes]
 gi|332818668|ref|XP_003310209.1| PREDICTED: replication factor C subunit 4 isoform 2 [Pan
          troglodytes]
          Length = 363

 Score = 39.7 bits (91), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+ ++E   Q E  + LK  +E A      L ++LF GPPG GKT+     AREL
Sbjct: 45 RPKCVDEVAFQEEVVAVLKKSLEGAD-----LPNLLFYGPPGTGKTSTILAAAREL 95


>gi|195539395|ref|NP_002797.3| 26S protease regulatory subunit 10B [Homo sapiens]
 gi|73963837|ref|XP_535701.2| PREDICTED: similar to proteasome 26S ATPase subunit 6 [Canis
           familiaris]
 gi|114653051|ref|XP_001159476.1| PREDICTED: 26S protease regulatory subunit 10B isoform 2 [Pan
           troglodytes]
 gi|291403875|ref|XP_002718294.1| PREDICTED: proteasome 26S ATPase subunit 6 [Oryctolagus cuniculus]
 gi|296215034|ref|XP_002753956.1| PREDICTED: 26S protease regulatory subunit S10B [Callithrix
           jacchus]
 gi|297695107|ref|XP_002824794.1| PREDICTED: 26S protease regulatory subunit S10B-like [Pongo abelii]
 gi|332237110|ref|XP_003267746.1| PREDICTED: 26S protease regulatory subunit 10B [Nomascus
           leucogenys]
          Length = 403

 Score = 39.7 bits (91), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 56/124 (45%), Gaps = 23/124 (18%)

Query: 8   LSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV--------L 58
           L  N+S ED  ++S        E  G  E    L+  IE      E    V        L
Sbjct: 132 LVYNMSHEDPGNVSY------SEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCL 185

Query: 59  FVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA-GDLAALLTNLED--RD----VLF 110
             GPPG GKT LA+ VA +L  NF +  S  ++ K  G+ A L+  + +  RD    ++F
Sbjct: 186 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIF 245

Query: 111 IDEI 114
           +DEI
Sbjct: 246 MDEI 249


>gi|57109940|ref|XP_535837.1| PREDICTED: similar to Activator 1 37 kDa subunit (Replication
          factor C 37 kDa subunit) (A1 37 kDa subunit) (RF-C 37
          kDa subunit) (RFC37) [Canis familiaris]
          Length = 363

 Score = 39.7 bits (91), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+ ++E   Q E  + LK  +E A      L ++LF GPPG GKT+     AREL
Sbjct: 44 RPKCVDEVAFQEEVVAVLKKSLEGAD-----LPNLLFYGPPGTGKTSTILAAAREL 94


>gi|89092955|ref|ZP_01165907.1| ATP-dependent protease ATP-binding subunit [Oceanospirillum sp.
           MED92]
 gi|89082980|gb|EAR62200.1| ATP-dependent protease ATP-binding subunit [Oceanospirillum sp.
           MED92]
          Length = 416

 Score = 39.7 bits (91), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDV 108
           ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+        D DV
Sbjct: 106 NILLIGPTGSGKTLLAQTLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDV 165

Query: 109 -------LFIDEIHRLS 118
                  ++IDEI ++S
Sbjct: 166 EKAQLGIVYIDEIDKIS 182


>gi|194335260|ref|YP_002017054.1| ATP-dependent metalloprotease FtsH [Pelodictyon phaeoclathratiforme
           BU-1]
 gi|194307737|gb|ACF42437.1| ATP-dependent metalloprotease FtsH [Pelodictyon phaeoclathratiforme
           BU-1]
          Length = 697

 Score = 39.7 bits (91), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E  V F S SG       V   A  +  L    +++   +
Sbjct: 233 VLLVGPPGTGKTLLAKAVAGEADVPFFSISGSDFVEMFVGVGAARVRDLFKQAKEKAPCI 292

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 293 IFIDEI 298


>gi|116626986|ref|YP_819605.1| cell division protein [Streptococcus thermophilus LMD-9]
 gi|116100263|gb|ABJ65409.1| FtsH-2 peptidase. Metallo peptidase. MEROPS family M41
           [Streptococcus thermophilus LMD-9]
          Length = 655

 Score = 39.7 bits (91), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLE--DRDV 108
           VL  GPPG GKT LA+ VA E  V F S SG       V   A  + +L  + +  +R +
Sbjct: 220 VLLEGPPGTGKTLLAKAVAGEADVPFFSISGSDFVEMFVGVGASRVRSLFEDAKKTERAI 279

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 280 IFIDEI 285


>gi|332215081|ref|XP_003256668.1| PREDICTED: replication factor C subunit 4 isoform 1 [Nomascus
          leucogenys]
 gi|332215083|ref|XP_003256669.1| PREDICTED: replication factor C subunit 4 isoform 2 [Nomascus
          leucogenys]
          Length = 363

 Score = 39.7 bits (91), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+ ++E   Q E  + LK  +E A      L ++LF GPPG GKT+     AREL
Sbjct: 45 RPKCVDEVAFQEEVVAVLKKSLEGAD-----LPNLLFYGPPGTGKTSTILAAAREL 95


>gi|329956773|ref|ZP_08297342.1| DNA polymerase III, subunit gamma and tau [Bacteroides clarus YIT
           12056]
 gi|328523812|gb|EGF50899.1| DNA polymerase III, subunit gamma and tau [Bacteroides clarus YIT
           12056]
          Length = 647

 Score = 39.7 bits (91), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 10/110 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP T E   GQ    + LK  I   K     L H  LF GP G+GKTT A++ A+ +   
Sbjct: 52  RPSTFESVVGQRALTTTLKNAIATGK-----LAHAYLFCGPRGVGKTTCARIFAKTINCM 106

Query: 82  FRSTSGPVIAKAGDLAAL----LTNLEDRDVLFIDEIHRLSIIVEEILYP 127
             +  G    +     A       N+ + D    + +  +  +VE++  P
Sbjct: 107 APTAEGEACNQCESCTAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIP 156


>gi|306778610|ref|ZP_07416947.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
          tuberculosis SUMu002]
 gi|306790999|ref|ZP_07429321.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
          tuberculosis SUMu004]
 gi|306791318|ref|ZP_07429620.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
          tuberculosis SUMu005]
 gi|308328340|gb|EFP17191.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
          tuberculosis SUMu002]
 gi|308332586|gb|EFP21437.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
          tuberculosis SUMu004]
 gi|308340077|gb|EFP28928.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
          tuberculosis SUMu005]
          Length = 578

 Score = 39.7 bits (91), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 6/68 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
          RP +  E  GQ    + L V ++A +     ++H  LF GP G GKT+ A+++AR L   
Sbjct: 8  RPASFAEVVGQEHVTAPLSVALDAGR-----INHAYLFSGPRGCGKTSSARILARSLNCA 62

Query: 82 FRSTSGPV 89
             T+ P 
Sbjct: 63 QGPTANPC 70


>gi|300176326|emb|CBK23637.2| unnamed protein product [Blastocystis hominis]
          Length = 445

 Score = 39.7 bits (91), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 90/211 (42%), Gaps = 36/211 (17%)

Query: 57  VLFVGPPGLGKTTLAQVVARELG-----VNFRS----TSGPVIAKAGDLAALLTNLEDRD 107
           +LF GPPG GKT++A+++ARE G     V   S      G    +   +  L   ++D  
Sbjct: 216 LLFEGPPGTGKTSIARLIARESGSILVHVPLESIVDKYYGESEKRLSSILKLCGEIDDA- 274

Query: 108 VLFIDEIHRLSIIVEE------------ILYPAMEDFQLDLMVG--EGPSARSVKINLS- 152
           ++FIDE+  L+   +             +L   +E F  +       G +  S K   + 
Sbjct: 275 IIFIDEVDSLATSRDNDQMNEVTRRLLSVLLRFLEGFNANNEEAGKNGSNGESGKRETAP 334

Query: 153 -RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEI 211
               LI AT R   L + L  RF + +     ++E  K I    AK     +++E   ++
Sbjct: 335 KHNILICATNRKHDLDSALLSRFDVQLHFPLPDVEARKQIFACYAK----QLSEEERQQL 390

Query: 212 AMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           A  S G   ++G   R +RD  E+A    ++
Sbjct: 391 AELSEG---MSG---RDIRDSCEIAERSWVS 415


>gi|302381982|ref|YP_003817805.1| ATP-dependent metalloprotease FtsH [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302192610|gb|ADL00182.1| ATP-dependent metalloprotease FtsH [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 646

 Score = 39.7 bits (91), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 20/30 (66%), Positives = 21/30 (70%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           L VGPPG GKT LA+ VA E GV F S SG
Sbjct: 199 LLVGPPGTGKTLLARAVAGEAGVPFFSISG 228


>gi|302560652|ref|ZP_07312994.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
           griseoflavus Tu4000]
 gi|302478270|gb|EFL41363.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
           griseoflavus Tu4000]
          Length = 428

 Score = 39.7 bits (91), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 59/133 (44%), Gaps = 35/133 (26%)

Query: 21  LLRPRTLEEF-----TGQVEACSNLKVFIE------------AAKARAEALD----HVLF 59
           L +PR + EF      GQ  A   L V +              A+ R +A++    ++L 
Sbjct: 61  LPKPREIYEFLEGYVVGQEAAKKALSVAVYNHYKRVQAGENGGAQGREDAIELAKSNILL 120

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDV---- 108
           +GP G GKT LAQ +AR L V F       + +AG +   + N+        D DV    
Sbjct: 121 LGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKKAE 180

Query: 109 ---LFIDEIHRLS 118
              ++IDEI +++
Sbjct: 181 TGIIYIDEIDKVA 193


>gi|251791977|ref|YP_003006697.1| ATP-dependent protease ATP-binding subunit ClpX [Aggregatibacter
           aphrophilus NJ8700]
 gi|247533364|gb|ACS96610.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Aggregatibacter aphrophilus NJ8700]
          Length = 415

 Score = 39.7 bits (91), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD--------LAALLTNLE--- 104
           ++L +GP G GKT LA+ +AR L V F       + +AG         L  LL N +   
Sbjct: 113 NILLIGPTGSGKTLLAETMARMLNVPFAMADATTLTEAGYVGEDVENVLQKLLQNCDYDI 172

Query: 105 ---DRDVLFIDEIHRLS 118
              ++ +++IDEI +++
Sbjct: 173 ERAEQGIIYIDEIDKIT 189


>gi|298345494|ref|YP_003718181.1| ATP-dependent metalloprotease FtsH [Mobiluncus curtisii ATCC 43063]
 gi|304391050|ref|ZP_07373002.1| cell division protein FtsH [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|298235555|gb|ADI66687.1| ATP-dependent metalloprotease FtsH [Mobiluncus curtisii ATCC 43063]
 gi|304325933|gb|EFL93179.1| cell division protein FtsH [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
          Length = 759

 Score = 39.7 bits (91), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 223 VLLYGPPGTGKTLLARAVAGEAGVPFFSMSG 253


>gi|289583038|ref|YP_003481504.1| adenosinetriphosphatase [Natrialba magadii ATCC 43099]
 gi|289532591|gb|ADD06942.1| Adenosinetriphosphatase [Natrialba magadii ATCC 43099]
          Length = 746

 Score = 39.7 bits (91), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 23/34 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL  GPPG GKT +A+ VA E+  +F + SGP I
Sbjct: 263 VLLYGPPGTGKTLIARAVANEVDAHFVTISGPEI 296



 Score = 38.1 bits (87), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL  GPPG GKT LA+ +A E  VNF    GP I
Sbjct: 530 VLLHGPPGTGKTLLARALAGETDVNFVRVDGPEI 563


>gi|197335612|ref|YP_002155559.1| ATP-dependent protease La [Vibrio fischeri MJ11]
 gi|197317102|gb|ACH66549.1| ATP-dependent protease La [Vibrio fischeri MJ11]
          Length = 760

 Score = 39.7 bits (91), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 77/164 (46%), Gaps = 28/164 (17%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           +  VGPPG+GKT+L Q +A+  G  + R   G V  +A              G L   L+
Sbjct: 327 LCLVGPPGVGKTSLGQSIAKATGRKYTRMALGGVRDEAEIRGHRRTYIGSLPGKLIQKLS 386

Query: 102 NLEDRDVLF-IDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARS-----VKINLSRFT 155
            +E ++ LF +DEI ++S  +      A+    L+++  E  SA S     V  +LS   
Sbjct: 387 KVEVKNPLFLLDEIDKMSSDMRGDPASAL----LEVLDPEQNSAFSDHYLEVDYDLSDVM 442

Query: 156 LIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199
            +A +  +  +  PL DR  + IRL+ Y  ED K  + +   LT
Sbjct: 443 FVATSNSMN-IPGPLLDRMEV-IRLSGY-TEDEKLNIAKNHLLT 483


>gi|156837546|ref|XP_001642796.1| hypothetical protein Kpol_385p7 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156113365|gb|EDO14938.1| hypothetical protein Kpol_385p7 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 362

 Score = 39.7 bits (91), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 17/28 (60%), Positives = 20/28 (71%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRS 84
           VL  GPPG GKT LA+ +A+E G NF S
Sbjct: 129 VLLYGPPGCGKTMLAKALAKESGANFIS 156


>gi|146175214|ref|XP_001470868.1| metalloprotease m41 ftsh [Tetrahymena thermophila]
 gi|146144688|gb|EDK31554.1| metalloprotease m41 ftsh [Tetrahymena thermophila SB210]
          Length = 708

 Score = 39.7 bits (91), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 45/95 (47%), Gaps = 11/95 (11%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           EE    V+   N + + EA    A+    +L VGPPG GKT LA+ +A E G +F   SG
Sbjct: 287 EELIELVDYLKNPQKYHEAG---AKLPKGILLVGPPGTGKTLLARALAGEAGCSFFYKSG 343

Query: 88  P------VIAKAGDLAALLTNLEDR--DVLFIDEI 114
                  V   A  +  L     ++   ++FIDEI
Sbjct: 344 SEFDEMFVGVGASRVRELFKKAREKAPSIIFIDEI 378


>gi|159897151|ref|YP_001543398.1| ATPase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159890190|gb|ABX03270.1| ATPase associated with various cellular activities AAA_3
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 327

 Score = 39.7 bits (91), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 22/96 (22%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFR-----------STSGPVI--AKAGDL----AA 98
           HVL    PG+GKTTLA+ +AR +G +F+             SG  I   K+G+       
Sbjct: 38  HVLLEDVPGVGKTTLAKAIARSIGCSFKRIQFTPDLLPTDVSGVSIYNQKSGEFEFRPGP 97

Query: 99  LLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           ++ NL     +  DEI+R +   +  L  +ME+ QL
Sbjct: 98  IIANL-----VLADEINRATPKTQSALLESMEEGQL 128


>gi|90994519|ref|YP_537009.1| cell division protein [Porphyra yezoensis]
 gi|122225815|sp|Q1XDF9|FTSH_PORYE RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|90819083|dbj|BAE92452.1| unnamed protein product [Porphyra yezoensis]
          Length = 628

 Score = 39.7 bits (91), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ +A E  V F S SG       V   A  +  L    +D    +
Sbjct: 209 VLLVGPPGTGKTLLAKAIAGEASVPFFSISGSEFVEMFVGVGASRVRDLFKKAKDNAPCI 268

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 269 VFIDEI 274


>gi|50540390|ref|NP_001002661.1| cell cycle checkpoint protein RAD17 [Danio rerio]
 gi|49901334|gb|AAH76494.1| RAD17 homolog (S. pombe) [Danio rerio]
 gi|182890084|gb|AAI63976.1| Rad17 protein [Danio rerio]
          Length = 665

 Score = 39.7 bits (91), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 33/76 (43%), Gaps = 3/76 (3%)

Query: 35  EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG 94
           E  S L+V ++ +K     L   L  GP G GKT   QV+A+ELG   +  S P      
Sbjct: 100 EVESWLRVHLDKSKKGGAIL---LLTGPSGCGKTATVQVLAKELGFQVQEWSNPSTTSQY 156

Query: 95  DLAALLTNLEDRDVLF 110
               L T   D D  F
Sbjct: 157 KTEDLFTQSFDPDSRF 172


>gi|157786766|ref|NP_001099339.1| replication factor C subunit 4 [Rattus norvegicus]
 gi|149019930|gb|EDL78078.1| replication factor C (activator 1) 4 (predicted), isoform CRA_a
          [Rattus norvegicus]
 gi|195540022|gb|AAI68166.1| Rfc4 protein [Rattus norvegicus]
          Length = 364

 Score = 39.7 bits (91), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+ ++E   Q E  + LK  +E A      L ++LF GPPG GKT+     AREL
Sbjct: 45 RPKCVDEVAFQEEVVAVLKKSLEGAD-----LPNLLFYGPPGTGKTSTILAAAREL 95


>gi|72162543|ref|YP_290200.1| ATPase [Thermobifida fusca YX]
 gi|71916275|gb|AAZ56177.1| ATPase [Thermobifida fusca YX]
          Length = 802

 Score = 39.7 bits (91), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 40/76 (52%), Gaps = 12/76 (15%)

Query: 54  LDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI-AKAGDL-------AALLTN-LE 104
           + H +FVGPPG GKTT+A+++ R        T   V+ A   DL        A+ TN L 
Sbjct: 567 MRHFVFVGPPGTGKTTVARILGRVFAALGLLTRADVVEASRADLVGEHLGATAIKTNQLV 626

Query: 105 DR---DVLFIDEIHRL 117
           DR    VLFIDE + L
Sbjct: 627 DRALGGVLFIDEAYSL 642



 Score = 36.2 bits (82), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 70/169 (41%), Gaps = 48/169 (28%)

Query: 54  LDHVLFVGPPGLGKTTLAQVVARELGVNFRS-----TSGPVIAKAGDL-------AALLT 101
           L H +F GPPG GKT+    VAR L   F S     T+  V A   DL        A+ T
Sbjct: 276 LRHFVFSGPPGTGKTS----VARTLATIFHSFGLLPTARVVEASRADLVGEYLGATAIKT 331

Query: 102 N-LEDR---DVLFIDEIHRL------------SIIVEEILYPAMEDFQLDLMVGEGPSAR 145
           N L DR    VLFIDE + L            +  V+ +L  A +D    +++  G  A 
Sbjct: 332 NELVDRALGGVLFIDEAYSLVNEGDGQPDRFGNEAVQTLLKRAEDDRDRLVIILAGYEA- 390

Query: 146 SVKINLSRFTLIAATTRVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQ 193
                + RF          L +NP L  RF   I    Y  ++L+ I +
Sbjct: 391 ----EMDRF----------LASNPGLASRFATRISFPSYTADELRRIAE 425


>gi|20806651|ref|NP_621822.1| ATP-dependent Zn protease [Thermoanaerobacter tengcongensis MB4]
 gi|20515099|gb|AAM23426.1| ATP-dependent Zn proteases [Thermoanaerobacter tengcongensis MB4]
          Length = 492

 Score = 39.7 bits (91), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 65/137 (47%), Gaps = 29/137 (21%)

Query: 1   MMDREGLL--SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAE------ 52
           +++  GL+  ++N+   ++++S       E+  GQ  A S LK  ++    R +      
Sbjct: 40  LIENRGLVPANKNIVNPESEVSF------EDIGGQNTAISELKEALDFVVNREKIAQMGI 93

Query: 53  -ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP----VIAKAG--------DLAAL 99
             +  +L +GPPG GKT LA+  A+    +F +TSG     + A  G        + A  
Sbjct: 94  RPIKGILLIGPPGTGKTLLAKAAAKYTNSSFIATSGSEFIEMYAGVGAQRVRHLFETAKS 153

Query: 100 LTNLEDRD--VLFIDEI 114
           L   E ++  ++FIDEI
Sbjct: 154 LAKKEGKNSAIIFIDEI 170


>gi|325184327|emb|CCA18818.1| ATPase AFG2 protein putative [Albugo laibachii Nc14]
          Length = 814

 Score = 39.7 bits (91), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 63/139 (45%), Gaps = 24/139 (17%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEA-LDH-------VLFVGPPGL 65
           +E+  +  ++  T  E  G  E    ++  +E++  + +  +DH       +L  GPPG 
Sbjct: 263 KEEHLVESVKRSTFAEIGGLEEEIRTIRQVMESSLYQPQFFMDHGLPPPKGILLFGPPGT 322

Query: 66  GKTTLAQVVARELGVNFRSTSGPVI-------AKAGDLAALLTNLEDR-DVLFIDEIHRL 117
           GK+ LA+ VA E   +F + +GP +        +A   A     L++   ++FIDEI   
Sbjct: 323 GKSMLAKAVASEFKASFYTINGPELITDMIGENEARVRAIFKLALQNSPSIIFIDEI--- 379

Query: 118 SIIVEEILYPAMEDFQLDL 136
                ++L P   D   DL
Sbjct: 380 -----DVLCPKRHDRSSDL 393


>gi|322515780|ref|ZP_08068725.1| cell division protein FtsH [Streptococcus vestibularis ATCC 49124]
 gi|322125742|gb|EFX97060.1| cell division protein FtsH [Streptococcus vestibularis ATCC 49124]
          Length = 659

 Score = 39.7 bits (91), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLE--DRDV 108
           VL  GPPG GKT LA+ VA E  V F S SG       V   A  + +L  + +  +R +
Sbjct: 220 VLLEGPPGTGKTLLAKAVAGEADVPFFSISGSDFVEMFVGVGASRVRSLFEDAKKAERAI 279

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 280 IFIDEI 285


>gi|320031241|gb|EFW13219.1| LON serine protease [Coccidioides posadasii str. Silveira]
          Length = 1067

 Score = 39.7 bits (91), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 76/193 (39%), Gaps = 38/193 (19%)

Query: 43  FIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA---- 97
           FI   K R      +L FVGPPG+GKT++ + +AR L   +   S   +    ++     
Sbjct: 558 FIAVGKLRGTVEGKILCFVGPPGVGKTSIGKSIARALNRQYYRFSVGGLTDVAEIKGHRR 617

Query: 98  ------------ALLTNLEDRDVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLM 137
                       AL     +  ++ IDE+ ++        S  + E+L P      LD  
Sbjct: 618 TYVGALPGRIIQALKKCQTENPLILIDEVDKIGRGHQGDPSSALLELLDPEQNSSFLDHY 677

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR--- 194
           +        V ++LS+   +        +  PL DR  I I L+ Y  ++   I +R   
Sbjct: 678 M-------DVPVDLSKVLFVCTANMTDTIPRPLLDRMEI-IELSGYVADEKMAIAERYLA 729

Query: 195 --GAKLTGLAVTD 205
               +L+GL   D
Sbjct: 730 PAAKELSGLKEVD 742


>gi|311269763|ref|XP_003132629.1| PREDICTED: replication factor C subunit 4-like [Sus scrofa]
          Length = 364

 Score = 39.7 bits (91), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+ ++E   Q E  + LK  +E A      L ++LF GPPG GKT+     AREL
Sbjct: 45 RPKCVDEVAFQEEVVAVLKKSLEGAD-----LPNLLFYGPPGTGKTSTILAAAREL 95


>gi|309776474|ref|ZP_07671460.1| ATP-dependent protease La [Erysipelotrichaceae bacterium 3_1_53]
 gi|308915865|gb|EFP61619.1| ATP-dependent protease La [Erysipelotrichaceae bacterium 3_1_53]
          Length = 774

 Score = 39.7 bits (91), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 85/207 (41%), Gaps = 44/207 (21%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTS-GPVIAKA---GDLAALLTNLEDR------ 106
           +  VGPPG+GKT+LA+ VAR L   F   S G V  ++   G     L ++  R      
Sbjct: 353 ICLVGPPGVGKTSLAKSVARALDRKFVKISLGGVKDESEIRGHRRTYLGSMPGRFIQAMK 412

Query: 107 ------DVLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLS 152
                  V  IDEI +++   +        E+L P       D  + E         +LS
Sbjct: 413 KAGTVNPVFLIDEIDKMASDYKGDPASAMLEVLDPEQNSLFSDHYIEE-------PYDLS 465

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL---------KTIVQRGAKLTGLAV 203
           +   IA    +  + N L+DR  I    ++ E+E +         K I + G K + L +
Sbjct: 466 KVLFIATANYLENIPNALRDRLEIIELSSYTELEKVEIAKRHLVPKQIKENGLKASQLKI 525

Query: 204 TDEAACEIAMRSRGTPRIAG-RLLRRV 229
            D+    I+   R   R +G R L RV
Sbjct: 526 DDDM---ISFLIRYYTRESGVRQLERV 549


>gi|296268571|ref|YP_003651203.1| adenylate kinase [Thermobispora bispora DSM 43833]
 gi|296091358|gb|ADG87310.1| adenylate kinase [Thermobispora bispora DSM 43833]
          Length = 217

 Score = 39.7 bits (91), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 49/103 (47%), Gaps = 5/103 (4%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSG---PVIAKAGDLAALLTNLEDRDVLFID 112
            V+ VGPPG GK T AQ +A  L V   ST       +++  +L  L     DR  L  D
Sbjct: 2   RVVLVGPPGAGKGTQAQYIASHLSVPKISTGDIFRANVSRGTELGKLAKEYMDRGELVPD 61

Query: 113 EIHRLSIIVEEILY-PAMEDFQLDLMVGEGPSARSVKINLSRF 154
           E+  ++++ + +L   A E F LD      P A  +K  L+ F
Sbjct: 62  EVT-IAMVRDRLLQDDAREGFLLDGFPRNVPQAEVLKEMLAEF 103


>gi|258592922|emb|CBE69231.1| ATP-dependent Clp protease ATP-binding subunit clpX [NC10 bacterium
           'Dutch sediment']
          Length = 415

 Score = 39.7 bits (91), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LAQ +A+ L V F       + +AG +   + N+            
Sbjct: 111 NILLIGPTGCGKTLLAQTLAKILDVPFTIADATTLTEAGYVGEDVENIILRLLQVADYDV 170

Query: 104 --EDRDVLFIDEIHRLS 118
              +R +++IDEI +++
Sbjct: 171 ERAERGIIYIDEIDKIA 187


>gi|289523085|ref|ZP_06439939.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503628|gb|EFD24792.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 427

 Score = 39.7 bits (91), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTN------------- 102
           ++L +GP G GKT LAQ +A+ L V F       + +AG +   + N             
Sbjct: 123 NILLLGPTGCGKTLLAQTLAQMLNVPFAIADATTLTEAGYVGEDVENILVRLLQSCDYDV 182

Query: 103 -LEDRDVLFIDEIHRLS 118
            L +R +++IDEI +++
Sbjct: 183 ALAERGIVYIDEIDKIA 199


>gi|284006422|emb|CBA71658.1| ATP-dependent Clp protease ATP-binding subunit [Arsenophonus
           nasoniae]
          Length = 428

 Score = 39.7 bits (91), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LA+ +AR L V F       + +AG +   + N+            
Sbjct: 118 NILLIGPTGSGKTLLAETLARYLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 177

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 178 EKAQRGIVYIDEIDKIS 194


>gi|253996689|ref|YP_003048753.1| ATP-dependent protease ATP-binding subunit ClpX [Methylotenera
           mobilis JLW8]
 gi|253983368|gb|ACT48226.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylotenera
           mobilis JLW8]
          Length = 426

 Score = 39.7 bits (91), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+         
Sbjct: 115 AKSNILLIGPTGSGKTLLAQTLARLLDVPFVMADATTLTEAGYVGEDVENIMQKLLQKCD 174

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDE+ ++S
Sbjct: 175 YDTEKAQRGIVYIDEVDKIS 194


>gi|256420339|ref|YP_003120992.1| ATPase AAA [Chitinophaga pinensis DSM 2588]
 gi|256035247|gb|ACU58791.1| Sigma 54 interacting domain protein [Chitinophaga pinensis DSM
           2588]
          Length = 411

 Score = 39.7 bits (91), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           +++ VG  G GKT LA+ +AR L V F      V  +AG    D+ ++LT L        
Sbjct: 111 NIIMVGETGTGKTLLAKSIARLLNVPFTIVDATVFTEAGYVGEDVESILTRLLQVCNYDV 170

Query: 104 --EDRDVLFIDEIHRLS 118
              +R +++IDEI +++
Sbjct: 171 EAAERGIVYIDEIDKIA 187


>gi|224126871|ref|XP_002319947.1| predicted protein [Populus trichocarpa]
 gi|222858323|gb|EEE95870.1| predicted protein [Populus trichocarpa]
          Length = 822

 Score = 39.7 bits (91), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 32/67 (47%), Gaps = 10/67 (14%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED---------RD 107
           +L  GPPG GKT LA  +A E GV F   S   +  +G   A   N+ D           
Sbjct: 272 ILLHGPPGCGKTKLAHAIANETGVPFYKISATEVV-SGVSGASEENIRDLFSKAYRTAPS 330

Query: 108 VLFIDEI 114
           ++FIDEI
Sbjct: 331 IIFIDEI 337


>gi|254419693|ref|ZP_05033417.1| ATP-dependent metallopeptidase HflB subfamily [Brevundimonas sp.
           BAL3]
 gi|196185870|gb|EDX80846.1| ATP-dependent metallopeptidase HflB subfamily [Brevundimonas sp.
           BAL3]
          Length = 654

 Score = 39.7 bits (91), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 20/30 (66%), Positives = 21/30 (70%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           L VGPPG GKT LA+ VA E GV F S SG
Sbjct: 201 LLVGPPGTGKTLLARAVAGEAGVPFFSISG 230


>gi|194898677|ref|XP_001978894.1| GG11155 [Drosophila erecta]
 gi|190650597|gb|EDV47852.1| GG11155 [Drosophila erecta]
          Length = 572

 Score = 39.7 bits (91), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108
           VL VGPPG GKT LA+ VA E G  F + S   +     G+   +      +        
Sbjct: 329 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSATLTSKYRGESEKMVRLLFEMARFYAPST 388

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 389 IFIDEIDSL 397


>gi|163731526|ref|ZP_02138973.1| ATP-dependent protease ATP-binding subunit [Roseobacter litoralis
           Och 149]
 gi|161394980|gb|EDQ19302.1| ATP-dependent protease ATP-binding subunit [Roseobacter litoralis
           Och 149]
          Length = 421

 Score = 39.7 bits (91), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+         
Sbjct: 110 AKSNILLIGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSSE 169

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDE+ +++
Sbjct: 170 YNVERAQRGIVYIDEVDKIT 189


>gi|125524362|gb|EAY72476.1| hypothetical protein OsI_00332 [Oryza sativa Indica Group]
          Length = 452

 Score = 39.7 bits (91), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 8/68 (11%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRS-TSGPVIAKA-GDLAALLTNL------EDRDVL 109
           L  GPPG GK+ LA+ VA E+   F S +S  +++K  G+   L+ NL          ++
Sbjct: 143 LLYGPPGTGKSYLAEAVATEVDSTFFSISSSDLVSKWMGESEKLVANLFQMARENAPSII 202

Query: 110 FIDEIHRL 117
           FIDEI  L
Sbjct: 203 FIDEIDSL 210


>gi|72111462|ref|XP_790164.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115951765|ref|XP_001175913.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 889

 Score = 39.7 bits (91), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 17/32 (53%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG  KT +A+ +A E G+NF S  GP
Sbjct: 660 VLLYGPPGCSKTLIAKALATESGLNFISVKGP 691


>gi|57641092|ref|YP_183570.1| cell division protein CDC48 [Thermococcus kodakarensis KOD1]
 gi|57159416|dbj|BAD85346.1| CDC48/VCP homolog, AAA superfamily [Thermococcus kodakarensis KOD1]
          Length = 796

 Score = 39.7 bits (91), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 8/75 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GD----LAALLTNLEDR--DV 108
           VL  GPPG GKT LA+ VA E   +F + +GP I     G+    L  +    E+    +
Sbjct: 219 VLLYGPPGTGKTLLAKAVANEANAHFIAINGPEIMSKYYGESEERLREVFKEAEENAPAI 278

Query: 109 LFIDEIHRLSIIVEE 123
           +FIDEI  ++   EE
Sbjct: 279 IFIDEIDSIAPKREE 293



 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT LA+ VA E   NF +  GP +
Sbjct: 554 ILLYGPPGTGKTLLAKAVANESEANFIAIKGPEV 587


>gi|15620529|gb|AAL03913.1|U30252_1 ClpX [Synechococcus elongatus PCC 7942]
 gi|2351824|gb|AAB68678.1| ATP-dependent Clp protease, regulatory subunit [Synechococcus
           elongatus PCC 7942]
          Length = 450

 Score = 39.7 bits (91), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 70/174 (40%), Gaps = 33/174 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LAQ +A+ L V F       + +AG +   + N+            
Sbjct: 141 NILLIGPTGCGKTLLAQTLAKLLDVPFAVADATTLTEAGYVGEDVENILLRLLQVADLDI 200

Query: 104 --EDRDVLFIDEIHRLS------IIVEEILYPAMEDFQLDLMVG-----------EGPSA 144
               R +++IDEI +++       I  ++    ++   L ++ G           + P  
Sbjct: 201 EEAQRGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTIANVPPQGGRKHPYQ 260

Query: 145 RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKL 198
             ++I+      I     VGL    L DR      + F   E+ KT  QR A +
Sbjct: 261 DCIQIDTRNILFICGGAFVGL--EKLVDRRLGKKSIGFVHPEESKTKEQRAAAI 312


>gi|297693781|ref|XP_002824183.1| PREDICTED: katanin p60 ATPase-containing subunit A-like 1-like
           isoform 1 [Pongo abelii]
 gi|297693783|ref|XP_002824184.1| PREDICTED: katanin p60 ATPase-containing subunit A-like 1-like
           isoform 2 [Pongo abelii]
          Length = 490

 Score = 39.7 bits (91), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL VGPPG GKT LA+ VA E G  F + S   +
Sbjct: 244 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTL 277


>gi|302901636|ref|XP_003048479.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256729412|gb|EEU42766.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 1018

 Score = 39.7 bits (91), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 10/66 (15%)

Query: 35  EACSNLKVFIEAAKARAEALDH----------VLFVGPPGLGKTTLAQVVARELGVNFRS 84
           +  S LK+    A  R +A  +           L  GPPG GKT LA+ VA+E G N   
Sbjct: 715 DTISALKLLTSLALVRPDAFSYGVLAQDKIPGCLLYGPPGTGKTLLAKAVAKESGANMLE 774

Query: 85  TSGPVI 90
            SG  I
Sbjct: 775 ISGATI 780


>gi|253681680|ref|ZP_04862477.1| ATP-dependent metallopeptidase HflB [Clostridium botulinum D str.
           1873]
 gi|253561392|gb|EES90844.1| ATP-dependent metallopeptidase HflB [Clostridium botulinum D str.
           1873]
          Length = 611

 Score = 39.7 bits (91), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 34/65 (52%), Gaps = 8/65 (12%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--VL 109
           L VGPPG GKT LA+ VA E  V F S SG    +      A  +  L    E++   ++
Sbjct: 200 LLVGPPGTGKTLLAKAVAGEAKVPFFSLSGSSFVEMFVGMGAARVRDLFKQAEEKAPCIV 259

Query: 110 FIDEI 114
           FIDEI
Sbjct: 260 FIDEI 264


>gi|239939935|ref|ZP_04691872.1| putative shikimate kinase and 3-dehydroquinate synthase
          [Streptomyces roseosporus NRRL 15998]
 gi|239986419|ref|ZP_04707083.1| putative shikimate kinase and 3-dehydroquinate synthase
          [Streptomyces roseosporus NRRL 11379]
 gi|291443366|ref|ZP_06582756.1| 3-dehydroquinate synthase [Streptomyces roseosporus NRRL 15998]
 gi|291346313|gb|EFE73217.1| 3-dehydroquinate synthase [Streptomyces roseosporus NRRL 15998]
          Length = 545

 Score = 39.7 bits (91), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 17/38 (44%), Positives = 27/38 (71%)

Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG 94
          V+ VGP G+GK+T+ +++A  LG  +R T   V+A+AG
Sbjct: 6  VVLVGPMGVGKSTVGELLAARLGTTYRDTDADVVAEAG 43


>gi|239931289|ref|ZP_04688242.1| ATP-dependent protease ATP-binding subunit ClpX [Streptomyces
           ghanaensis ATCC 14672]
 gi|291439662|ref|ZP_06579052.1| ATP-dependent protease ATP-binding subunit [Streptomyces ghanaensis
           ATCC 14672]
 gi|291342557|gb|EFE69513.1| ATP-dependent protease ATP-binding subunit [Streptomyces ghanaensis
           ATCC 14672]
          Length = 428

 Score = 39.7 bits (91), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 59/133 (44%), Gaps = 35/133 (26%)

Query: 21  LLRPRTLEEF-----TGQVEACSNLKVFIE------------AAKARAEALD----HVLF 59
           L +PR + EF      GQ  A   L V +              A+ R +A++    ++L 
Sbjct: 61  LPKPREIYEFLEGYVVGQEAAKKALSVAVYNHYKRVQAGENGGAQGREDAIELAKSNILL 120

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDV---- 108
           +GP G GKT LAQ +AR L V F       + +AG +   + N+        D DV    
Sbjct: 121 LGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKKAE 180

Query: 109 ---LFIDEIHRLS 118
              ++IDEI +++
Sbjct: 181 TGIIYIDEIDKVA 193


>gi|224824779|ref|ZP_03697886.1| ATPase associated with various cellular activities AAA_3 [Lutiella
           nitroferrum 2002]
 gi|224603272|gb|EEG09448.1| ATPase associated with various cellular activities AAA_3 [Lutiella
           nitroferrum 2002]
          Length = 304

 Score = 39.7 bits (91), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 16/107 (14%)

Query: 44  IEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL 103
           I+ A A   A  H+L    PG+GKTTLAQ +A  LG+++R           D+  +  N+
Sbjct: 22  IKLALACLVARGHLLIEDVPGVGKTTLAQGLAHVLGLDYRRVQFTSDLLPADIVGV--NI 79

Query: 104 EDRD--------------VLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
            +R+              VL  DEI+R S  V+  L  AME+ Q+ +
Sbjct: 80  FERETGTFRFHRGPVFAQVLLADEINRASPKVQSALLEAMEERQVSV 126


>gi|212693626|ref|ZP_03301754.1| hypothetical protein BACDOR_03145 [Bacteroides dorei DSM 17855]
 gi|237708786|ref|ZP_04539267.1| AAA-metalloprotease FtsH ATPase domain-containing protein
           [Bacteroides sp. 9_1_42FAA]
 gi|237724224|ref|ZP_04554705.1| metalloprotease FtsH [Bacteroides sp. D4]
 gi|265755948|ref|ZP_06090415.1| metalloprotease FtsH [Bacteroides sp. 3_1_33FAA]
 gi|212663879|gb|EEB24453.1| hypothetical protein BACDOR_03145 [Bacteroides dorei DSM 17855]
 gi|229437412|gb|EEO47489.1| metalloprotease FtsH [Bacteroides dorei 5_1_36/D4]
 gi|229457212|gb|EEO62933.1| AAA-metalloprotease FtsH ATPase domain-containing protein
           [Bacteroides sp. 9_1_42FAA]
 gi|263234026|gb|EEZ19627.1| metalloprotease FtsH [Bacteroides sp. 3_1_33FAA]
          Length = 668

 Score = 39.7 bits (91), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 48/104 (46%), Gaps = 15/104 (14%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ EA   ++  +E  K   +  +         L VGPPG GKT LA+ VA E 
Sbjct: 188 TFKDVAGQAEAKQEVEEIVEFLKQPQKYTELGGKIPKGALLVGPPGTGKTLLAKAVAGEA 247

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEI 114
            V F S SG       V   A  +  L    +++   ++FIDEI
Sbjct: 248 DVPFFSLSGSDFVEMFVGVGASRVRDLFRQAKEKAPCIIFIDEI 291


>gi|254421263|ref|ZP_05034981.1| ATP-dependent metallopeptidase HflB subfamily [Synechococcus sp.
           PCC 7335]
 gi|196188752|gb|EDX83716.1| ATP-dependent metallopeptidase HflB subfamily [Synechococcus sp.
           PCC 7335]
          Length = 668

 Score = 39.7 bits (91), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E G  F S SG
Sbjct: 248 VLLVGPPGTGKTLLAKAIAGEAGTPFFSISG 278


>gi|213983145|ref|NP_001135488.1| replication factor C (activator 1) 2, 40kDa [Xenopus (Silurana)
          tropicalis]
 gi|195539917|gb|AAI67884.1| Unknown (protein for MGC:135299) [Xenopus (Silurana) tropicalis]
          Length = 345

 Score = 39.7 bits (91), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP  L E  G  E  S L+VF     AR   + +++  GPPG GKTT    +AR L
Sbjct: 38 RPLKLSEIVGNEETVSRLEVF-----AREGNVPNIIIAGPPGTGKTTSILCLARAL 88


>gi|195111694|ref|XP_002000413.1| GI10218 [Drosophila mojavensis]
 gi|193917007|gb|EDW15874.1| GI10218 [Drosophila mojavensis]
          Length = 580

 Score = 39.7 bits (91), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108
           VL VGPPG GKT LA+ VA E G  F + S   +     G+   +      +        
Sbjct: 337 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSATLTSKYRGESEKMVRLLFEMARFYAPST 396

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 397 IFIDEIDSL 405


>gi|193676219|ref|XP_001942989.1| PREDICTED: replication factor C subunit 5-like [Acyrthosiphon
          pisum]
          Length = 329

 Score = 39.7 bits (91), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 7/64 (10%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV-- 80
          RP TL++     +    +  FI     + + L H+LF GPPG GKT+     A++L    
Sbjct: 15 RPNTLDDLISHEDIIQTIGKFI-----KEDQLPHLLFYGPPGTGKTSTILACAKQLYTPA 69

Query: 81 NFRS 84
           FRS
Sbjct: 70 QFRS 73


>gi|189055096|dbj|BAG38080.1| unnamed protein product [Homo sapiens]
          Length = 490

 Score = 39.7 bits (91), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL VGPPG GKT LA+ VA E G  F + S   +
Sbjct: 244 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTL 277


>gi|149194984|ref|ZP_01872077.1| ZINC METALLOPEPTIDASE [Caminibacter mediatlanticus TB-2]
 gi|149134905|gb|EDM23388.1| ZINC METALLOPEPTIDASE [Caminibacter mediatlanticus TB-2]
          Length = 647

 Score = 39.7 bits (91), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL------EDRDV 108
           VL VGPPG GKT LA+ VA E  V F + SG    +   G  AA + +L      E   +
Sbjct: 208 VLLVGPPGTGKTLLAKAVAGEADVPFFAVSGSSFIEMFVGVGAARVRDLFNQAKKEAPSI 267

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 268 IFIDEI 273


>gi|145355383|ref|XP_001421942.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144582181|gb|ABP00236.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 636

 Score = 39.7 bits (91), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           +L VGPPG GKT LA+ VA E GV F  +SG
Sbjct: 241 LLLVGPPGTGKTMLAKAVAGEAGVPFFYSSG 271


>gi|126338206|ref|XP_001370165.1| PREDICTED: similar to replication factor C, 37-kDa subunit
          [Monodelphis domestica]
          Length = 366

 Score = 39.7 bits (91), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 5/60 (8%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          +   RP+ ++E   Q E  + LK  +E A      L ++LF GPPG GKT+     AREL
Sbjct: 42 VEKYRPKCVDEVAFQEEVVAVLKKSLEGAD-----LPNLLFYGPPGTGKTSTILAAAREL 96


>gi|108797045|ref|YP_637242.1| AAA ATPase, central region [Mycobacterium sp. MCS]
 gi|119866130|ref|YP_936082.1| ATPase central domain-containing protein [Mycobacterium sp. KMS]
 gi|108767464|gb|ABG06186.1| AAA ATPase, central region [Mycobacterium sp. MCS]
 gi|119692219|gb|ABL89292.1| AAA ATPase, central domain protein [Mycobacterium sp. KMS]
          Length = 573

 Score = 39.7 bits (91), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 2/72 (2%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           RE LL    ++ D  I L R +  E+      A    K+        A+   H++F GPP
Sbjct: 279 RERLLEEAQAELDRQIGLSRVK--EQIEAYRAATQMAKIRAARGMKVAQTSKHMIFAGPP 336

Query: 64  GLGKTTLAQVVA 75
           G GKTT+A+VVA
Sbjct: 337 GTGKTTIARVVA 348


>gi|147904320|ref|NP_001084837.1| replication factor C (activator 1) 2, 40kDa [Xenopus laevis]
 gi|47124709|gb|AAH70622.1| MGC81391 protein [Xenopus laevis]
          Length = 348

 Score = 39.7 bits (91), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 5/67 (7%)

Query: 12 VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
          V+ E   +   RP  L E  G  E  S L+VF     AR   + +++  GPPG GKTT  
Sbjct: 27 VTYELPWVEKYRPLKLNEIVGNEETVSRLEVF-----AREGNVPNIIIAGPPGTGKTTSI 81

Query: 72 QVVAREL 78
            +AR L
Sbjct: 82 LCLARAL 88


>gi|213972598|ref|NP_001093979.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Rattus
           norvegicus]
 gi|293341981|ref|XP_002725096.1| PREDICTED: proteasome (prosome, macropain) 26S subunit, ATPase,
           6-like [Rattus norvegicus]
 gi|149033503|gb|EDL88301.1| rCG61291 [Rattus norvegicus]
          Length = 403

 Score = 39.7 bits (91), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 56/124 (45%), Gaps = 23/124 (18%)

Query: 8   LSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV--------L 58
           L  N+S ED  ++S        E  G  E    L+  IE      E    V        L
Sbjct: 132 LVYNMSHEDPGNVSY------SEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCL 185

Query: 59  FVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA-GDLAALLTNLED--RD----VLF 110
             GPPG GKT LA+ VA +L  NF +  S  ++ K  G+ A L+  + +  RD    ++F
Sbjct: 186 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIF 245

Query: 111 IDEI 114
           +DEI
Sbjct: 246 MDEI 249


>gi|31077102|ref|NP_852053.1| paraplegin [Rattus norvegicus]
 gi|81912692|sp|Q7TT47|SPG7_RAT RecName: Full=Paraplegin
 gi|30841810|gb|AAP35059.1| paraplegin [Rattus norvegicus]
 gi|149038417|gb|EDL92777.1| spastic paraplegia 7 homolog (human) [Rattus norvegicus]
          Length = 744

 Score = 39.7 bits (91), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 115/278 (41%), Gaps = 52/278 (18%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRT-----LEEFTGQVEACSNLKVFIEAAKAR----- 50
           M  REG  S     + A  +++  +T      ++  G  EA   ++ F++  K+      
Sbjct: 277 MTGREGGFSAFNQLKMARFTIVDGKTGKGVSFQDVAGMHEAKLEVREFVDYLKSPERFLQ 336

Query: 51  --AEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTN 102
             A+     L +GPPG GKT LA+ VA E  V F + +GP   +      A  + +L   
Sbjct: 337 LGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGPEFVEVIGGLGAARVRSLFKE 396

Query: 103 LEDRD--VLFIDEIHRLSIIVEEIL--YPAMEDFQ-----LDLMVGEGPSARSVKINLSR 153
              R   +++IDEI  +       +  +   E+ Q     L  M G G +   +      
Sbjct: 397 ARARAPCIVYIDEIDAVGKKRSTSMSGFSNTEEEQTLNQLLVEMDGMGTADHVI------ 450

Query: 154 FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR----GAKLTGLAVTDEAAC 209
             ++A+T R  +L N L      P RL+ +   DL T+ +R       L GL +T  ++ 
Sbjct: 451 --VLASTNRADVLDNALMR----PGRLDRHVFIDLPTLQERREIFEQHLKGLKLTQPSSF 504

Query: 210 EIAMRSRGTPRIAG-----RLL----RRVRDFAEVAHA 238
                +  TP  +G     ++L    +RV  F E  HA
Sbjct: 505 YSQRLAELTPGFSGTAKKSKILSKEEQRVVAFHESGHA 542


>gi|78183645|ref|YP_376079.1| ATP-dependent protease ATP-binding subunit ClpX [Synechococcus sp.
           CC9902]
 gi|123729976|sp|Q3B0U2|CLPX_SYNS9 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|78167939|gb|ABB25036.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Synechococcus
           sp. CC9902]
          Length = 450

 Score = 39.7 bits (91), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 4/73 (5%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNLEDRDVLFI 111
           ++L +GP G GKT LAQ +A  L V F       + +AG    D+  +L  L  +  + +
Sbjct: 137 NILLIGPTGCGKTLLAQTLAEMLDVPFAVADATTLTEAGYVGEDVENILLRLLQKADMDV 196

Query: 112 DEIHRLSIIVEEI 124
           D+  R  I ++EI
Sbjct: 197 DQAQRGIIYIDEI 209


>gi|54290174|dbj|BAD61062.1| putative p60 katanin [Oryza sativa Japonica Group]
 gi|222617709|gb|EEE53841.1| hypothetical protein OsJ_00317 [Oryza sativa Japonica Group]
          Length = 478

 Score = 39.7 bits (91), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 8/68 (11%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRS-TSGPVIAKA-GDLAALLTNL------EDRDVL 109
           L  GPPG GK+ LA+ VA E+   F S +S  +++K  G+   L+ NL          ++
Sbjct: 146 LLYGPPGTGKSYLAEAVATEVDSTFFSISSSDLVSKWMGESEKLVANLFQMARENAPSII 205

Query: 110 FIDEIHRL 117
           FIDEI  L
Sbjct: 206 FIDEIDSL 213


>gi|19113998|ref|NP_593086.1| AAA family ATPase Vps4 (predicted) [Schizosaccharomyces pombe
           972h-]
 gi|1173445|sp|Q09803|VPS4_SCHPO RecName: Full=Suppressor protein of bem1/bed5 double mutants
 gi|496311|gb|AAA35347.1| supressor protein [Schizosaccharomyces pombe]
 gi|1019404|emb|CAA91171.1| AAA family ATPase Vps4 (predicted) [Schizosaccharomyces pombe]
          Length = 432

 Score = 39.7 bits (91), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRS-TSGPVIAKA-GDLAALLTNL------EDRDV 108
           +L  GPPG GK+ LA+ VA E G  F S +S  +++K  G+   L+  L      +   +
Sbjct: 165 ILLYGPPGTGKSYLAKAVATEAGSTFFSISSSDLVSKWMGESERLVRQLFEMAREQKPSI 224

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 225 IFIDEIDSL 233


>gi|14149767|ref|NP_115492.1| katanin p60 ATPase-containing subunit A-like 1 [Homo sapiens]
 gi|62177112|ref|NP_001014402.1| katanin p60 ATPase-containing subunit A-like 1 [Homo sapiens]
 gi|60390214|sp|Q9BW62|KATL1_HUMAN RecName: Full=Katanin p60 ATPase-containing subunit A-like 1;
           Short=Katanin p60 subunit A-like 1; AltName: Full=p60
           katanin-like 1
 gi|12653659|gb|AAH00612.1| Katanin p60 subunit A-like 1 [Homo sapiens]
 gi|55958969|emb|CAI13718.1| katanin p60 subunit A-like 1 [Homo sapiens]
 gi|119628857|gb|EAX08452.1| katanin p60 subunit A-like 1, isoform CRA_a [Homo sapiens]
 gi|119628858|gb|EAX08453.1| katanin p60 subunit A-like 1, isoform CRA_a [Homo sapiens]
 gi|123984439|gb|ABM83565.1| katanin p60 subunit A-like 1 [synthetic construct]
 gi|123998403|gb|ABM86803.1| katanin p60 subunit A-like 1 [synthetic construct]
 gi|158256314|dbj|BAF84128.1| unnamed protein product [Homo sapiens]
          Length = 490

 Score = 39.7 bits (91), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL VGPPG GKT LA+ VA E G  F + S   +
Sbjct: 244 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTL 277


>gi|66816709|ref|XP_642364.1| AAA ATPase domain-containing protein [Dictyostelium discoideum AX4]
 gi|60470410|gb|EAL68390.1| AAA ATPase domain-containing protein [Dictyostelium discoideum AX4]
          Length = 886

 Score = 39.7 bits (91), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 8/71 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDR------DV 108
           +L  GPPG  KT LA+ +A E G+NF +  GP +++K  G+    + ++  +       +
Sbjct: 659 ILLYGPPGCSKTLLAKALATESGLNFIAVKGPELLSKWVGESERAVRDIFKKARQNSPSI 718

Query: 109 LFIDEIHRLSI 119
           LF DEI  L+I
Sbjct: 719 LFFDEIDGLAI 729


>gi|15610857|ref|NP_218238.1| DNA polymerase III subunits gamma and tau [Mycobacterium
          tuberculosis H37Rv]
 gi|15843342|ref|NP_338379.1| DNA polymerase III subunits gamma and tau [Mycobacterium
          tuberculosis CDC1551]
 gi|31794893|ref|NP_857386.1| DNA polymerase III subunits gamma and tau [Mycobacterium bovis
          AF2122/97]
 gi|121639637|ref|YP_979861.1| DNA polymerase III subunits gamma and tau [Mycobacterium bovis
          BCG str. Pasteur 1173P2]
 gi|148663586|ref|YP_001285109.1| DNA polymerase III subunits gamma and tau [Mycobacterium
          tuberculosis H37Ra]
 gi|148824926|ref|YP_001289680.1| DNA polymerase III subunits gamma and tau [Mycobacterium
          tuberculosis F11]
 gi|167970876|ref|ZP_02553153.1| DNA polymerase III subunits gamma and tau [Mycobacterium
          tuberculosis H37Ra]
 gi|215405773|ref|ZP_03417954.1| DNA polymerase III subunits gamma and tau [Mycobacterium
          tuberculosis 02_1987]
 gi|215413648|ref|ZP_03422316.1| DNA polymerase III subunits gamma and tau [Mycobacterium
          tuberculosis 94_M4241A]
 gi|215432700|ref|ZP_03430619.1| DNA polymerase III subunits gamma and tau [Mycobacterium
          tuberculosis EAS054]
 gi|215448061|ref|ZP_03434813.1| DNA polymerase III subunits gamma and tau [Mycobacterium
          tuberculosis T85]
 gi|224992133|ref|YP_002646822.1| DNA polymerase III subunit gamma and tau [Mycobacterium bovis BCG
          str. Tokyo 172]
 gi|253800767|ref|YP_003033768.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
          tuberculosis KZN 1435]
 gi|254233216|ref|ZP_04926542.1| DNA polymerase III (subunit gamma/tau) dnaZ/X [Mycobacterium
          tuberculosis C]
 gi|254366266|ref|ZP_04982310.1| DNA polymerase III (subunit gamma/tau) dnaZ/X [Mycobacterium
          tuberculosis str. Haarlem]
 gi|254552831|ref|ZP_05143278.1| DNA polymerase III subunits gamma and tau [Mycobacterium
          tuberculosis '98-R604 INH-RIF-EM']
 gi|260184642|ref|ZP_05762116.1| DNA polymerase III subunits gamma and tau [Mycobacterium
          tuberculosis CPHL_A]
 gi|260198766|ref|ZP_05766257.1| DNA polymerase III subunits gamma and tau [Mycobacterium
          tuberculosis T46]
 gi|260202922|ref|ZP_05770413.1| DNA polymerase III subunits gamma and tau [Mycobacterium
          tuberculosis K85]
 gi|289441157|ref|ZP_06430901.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
          tuberculosis T46]
 gi|289445320|ref|ZP_06435064.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
          tuberculosis CPHL_A]
 gi|289555986|ref|ZP_06445196.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
          tuberculosis KZN 605]
 gi|289572372|ref|ZP_06452599.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
          tuberculosis K85]
 gi|289747560|ref|ZP_06506938.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
          tuberculosis 02_1987]
 gi|289755852|ref|ZP_06515230.1| DNA polymerase III subunit gamma/tau [Mycobacterium tuberculosis
          EAS054]
 gi|289759882|ref|ZP_06519260.1| DNA polymerase III subunit gamma/tau [Mycobacterium tuberculosis
          T85]
 gi|294995369|ref|ZP_06801060.1| DNA polymerase III subunits gamma and tau [Mycobacterium
          tuberculosis 210]
 gi|297636399|ref|ZP_06954179.1| DNA polymerase III subunits gamma and tau [Mycobacterium
          tuberculosis KZN 4207]
 gi|297733393|ref|ZP_06962511.1| DNA polymerase III subunits gamma and tau [Mycobacterium
          tuberculosis KZN R506]
 gi|298527198|ref|ZP_07014607.1| DNA polymerase III, gamma and tau subunits [Mycobacterium
          tuberculosis 94_M4241A]
 gi|306778078|ref|ZP_07416415.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
          tuberculosis SUMu001]
 gi|306786633|ref|ZP_07424955.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
          tuberculosis SUMu003]
 gi|306795383|ref|ZP_07433685.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
          tuberculosis SUMu006]
 gi|306801354|ref|ZP_07438022.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
          tuberculosis SUMu008]
 gi|306805565|ref|ZP_07442233.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
          tuberculosis SUMu007]
 gi|306969962|ref|ZP_07482623.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
          tuberculosis SUMu009]
 gi|306974195|ref|ZP_07486856.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
          tuberculosis SUMu010]
 gi|307081903|ref|ZP_07491073.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
          tuberculosis SUMu011]
 gi|307086516|ref|ZP_07495629.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
          tuberculosis SUMu012]
 gi|313660724|ref|ZP_07817604.1| DNA polymerase III subunits gamma and tau [Mycobacterium
          tuberculosis KZN V2475]
 gi|54036989|sp|P63976|DPO3X_MYCBO RecName: Full=DNA polymerase III subunit gamma/tau
 gi|54040950|sp|P63975|DPO3X_MYCTU RecName: Full=DNA polymerase III subunit gamma/tau
 gi|2960145|emb|CAA18043.1| DNA POLYMERASE III (SUBUNIT GAMMA/TAU) DNAZ/X [Mycobacterium
          tuberculosis H37Rv]
 gi|13883704|gb|AAK48193.1| DNA polymerase III, gamma and tau subunits [Mycobacterium
          tuberculosis CDC1551]
 gi|31620491|emb|CAD95934.1| DNA POLYMERASE III (SUBUNIT GAMMA/TAU) DNAZ/X [Mycobacterium
          bovis AF2122/97]
 gi|121495285|emb|CAL73771.1| DNA polymerase III (subunit gamma/tau) dnaZ/X [Mycobacterium
          bovis BCG str. Pasteur 1173P2]
 gi|124603009|gb|EAY61284.1| DNA polymerase III (subunit gamma/tau) dnaZ/X [Mycobacterium
          tuberculosis C]
 gi|134151778|gb|EBA43823.1| DNA polymerase III (subunit gamma/tau) dnaZ/X [Mycobacterium
          tuberculosis str. Haarlem]
 gi|148507738|gb|ABQ75547.1| DNA polymerase III subunits gamma and tau DnaZ/X [Mycobacterium
          tuberculosis H37Ra]
 gi|148723453|gb|ABR08078.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
          tuberculosis F11]
 gi|224775248|dbj|BAH28054.1| DNA polymerase III subunit gamma and tau [Mycobacterium bovis BCG
          str. Tokyo 172]
 gi|253322270|gb|ACT26873.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
          tuberculosis KZN 1435]
 gi|289414076|gb|EFD11316.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
          tuberculosis T46]
 gi|289418278|gb|EFD15479.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
          tuberculosis CPHL_A]
 gi|289440618|gb|EFD23111.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
          tuberculosis KZN 605]
 gi|289536803|gb|EFD41381.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
          tuberculosis K85]
 gi|289688088|gb|EFD55576.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
          tuberculosis 02_1987]
 gi|289696439|gb|EFD63868.1| DNA polymerase III subunit gamma/tau [Mycobacterium tuberculosis
          EAS054]
 gi|289715446|gb|EFD79458.1| DNA polymerase III subunit gamma/tau [Mycobacterium tuberculosis
          T85]
 gi|298496992|gb|EFI32286.1| DNA polymerase III, gamma and tau subunits [Mycobacterium
          tuberculosis 94_M4241A]
 gi|308213607|gb|EFO73006.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
          tuberculosis SUMu001]
 gi|308328744|gb|EFP17595.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
          tuberculosis SUMu003]
 gi|308344067|gb|EFP32918.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
          tuberculosis SUMu006]
 gi|308347865|gb|EFP36716.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
          tuberculosis SUMu007]
 gi|308351853|gb|EFP40704.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
          tuberculosis SUMu008]
 gi|308352518|gb|EFP41369.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
          tuberculosis SUMu009]
 gi|308356468|gb|EFP45319.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
          tuberculosis SUMu010]
 gi|308360415|gb|EFP49266.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
          tuberculosis SUMu011]
 gi|308364111|gb|EFP52962.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
          tuberculosis SUMu012]
 gi|323717585|gb|EGB26787.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
          tuberculosis CDC1551A]
 gi|326905560|gb|EGE52493.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
          tuberculosis W-148]
 gi|328460495|gb|AEB05918.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
          tuberculosis KZN 4207]
          Length = 578

 Score = 39.7 bits (91), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 6/68 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
          RP +  E  GQ    + L V ++A +     ++H  LF GP G GKT+ A+++AR L   
Sbjct: 8  RPASFAEVVGQEHVTAPLSVALDAGR-----INHAYLFSGPRGCGKTSSARILARSLNCA 62

Query: 82 FRSTSGPV 89
             T+ P 
Sbjct: 63 QGPTANPC 70


>gi|326926086|ref|XP_003209236.1| PREDICTED: replication factor C subunit 4-like [Meleagris
          gallopavo]
          Length = 362

 Score = 39.7 bits (91), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+ ++E   Q E  + LK  +E A      L ++LF GPPG GKT+     AREL
Sbjct: 43 RPKNVDEVAFQDEVVAVLKKSLEGAD-----LPNLLFYGPPGTGKTSTILAAAREL 93


>gi|315634781|ref|ZP_07890063.1| ATP-dependent Clp protease ATP-binding subunit [Aggregatibacter
           segnis ATCC 33393]
 gi|315476333|gb|EFU67083.1| ATP-dependent Clp protease ATP-binding subunit [Aggregatibacter
           segnis ATCC 33393]
          Length = 416

 Score = 39.7 bits (91), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD--------LAALLTNLE--- 104
           ++L +GP G GKT LA+ +AR L V F       + +AG         L  LL N +   
Sbjct: 114 NILLIGPTGSGKTLLAETMARMLNVPFAMADATTLTEAGYVGEDVENVLQKLLQNCDYDI 173

Query: 105 ---DRDVLFIDEIHRLS 118
              ++ +++IDEI +++
Sbjct: 174 ERAEQGIIYIDEIDKIT 190


>gi|312143236|ref|YP_003994682.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Halanaerobium
           sp. 'sapolanicus']
 gi|311903887|gb|ADQ14328.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Halanaerobium
           sp. 'sapolanicus']
          Length = 421

 Score = 39.7 bits (91), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           +++ VGP G GKT +AQ +AR L V F  T    + +AG    D+  +L  L        
Sbjct: 112 NIMMVGPTGCGKTLMAQTLARILDVPFAITDATSLTEAGYVGEDVENILLKLIQAADYDV 171

Query: 104 --EDRDVLFIDEIHRLS 118
              ++ ++++DEI +++
Sbjct: 172 EKAEKGIIYVDEIDKIA 188


>gi|302837440|ref|XP_002950279.1| hypothetical protein VOLCADRAFT_104663 [Volvox carteri f.
           nagariensis]
 gi|300264284|gb|EFJ48480.1| hypothetical protein VOLCADRAFT_104663 [Volvox carteri f.
           nagariensis]
          Length = 1576

 Score = 39.7 bits (91), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 33/62 (53%), Gaps = 10/62 (16%)

Query: 48  KARAEALDHVLFVG-PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD---LAALLTNL 103
           KA +     VL +G PPGLGKTTLA VVAR  G +      P    A D    A LLT +
Sbjct: 752 KADSRPQQKVLLIGGPPGLGKTTLAHVVARHCGYH------PYEINASDDRTAATLLTKI 805

Query: 104 ED 105
           +D
Sbjct: 806 QD 807


>gi|296224812|ref|XP_002758207.1| PREDICTED: replication factor C subunit 4 [Callithrix jacchus]
          Length = 363

 Score = 39.7 bits (91), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+ ++E   Q E  + LK  +E A      L ++LF GPPG GKT+     AREL
Sbjct: 45 RPKCVDEVAFQEEVVAVLKKSLEGAD-----LPNLLFYGPPGTGKTSTILAAAREL 95


>gi|291403094|ref|XP_002717793.1| PREDICTED: spermatogenesis associated 5-like 1 [Oryctolagus
           cuniculus]
          Length = 810

 Score = 39.7 bits (91), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 11/73 (15%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLAALLTNLEDR-------- 106
           VL  GPPG+GKT L + VARE G    + S P +  ++ G+    +  +  R        
Sbjct: 237 VLLAGPPGVGKTQLVRAVAREAGAELLAVSAPALQGSRPGETEENVRRVFQRARELARRG 296

Query: 107 -DVLFIDEIHRLS 118
             VLF+DE+  L 
Sbjct: 297 PSVLFLDEVDALC 309


>gi|254773386|ref|ZP_05214902.1| DNA polymerase III subunits gamma and tau [Mycobacterium avium
          subsp. avium ATCC 25291]
          Length = 612

 Score = 39.7 bits (91), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 6/68 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
          RP T  E  GQ      L + +EA +     ++H  LF GP G GKT+ A+++AR L   
Sbjct: 8  RPATFAEVVGQEHVTEPLSIALEAGR-----INHAYLFSGPRGCGKTSSARILARSLNCV 62

Query: 82 FRSTSGPV 89
             T+ P 
Sbjct: 63 QGPTATPC 70


>gi|255714124|ref|XP_002553344.1| KLTH0D14586p [Lachancea thermotolerans]
 gi|238934724|emb|CAR22906.1| KLTH0D14586p [Lachancea thermotolerans]
          Length = 774

 Score = 39.7 bits (91), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL  GPPG  KT  A+ +A E GVNF +  GP I
Sbjct: 546 VLLYGPPGCSKTLTAKALATESGVNFLAVKGPEI 579



 Score = 38.1 bits (87), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DV 108
           +L  GPPG GKT L + VA E   +  + +GP I     G+  A L ++ +        +
Sbjct: 277 ILLHGPPGTGKTMLLRCVASEANAHVLTINGPSIVSKYLGETEAALRDIFNEARIYQPSI 336

Query: 109 LFIDEIHRLS 118
           +FIDEI  L+
Sbjct: 337 IFIDEIDSLA 346


>gi|256832189|ref|YP_003160916.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Jonesia
           denitrificans DSM 20603]
 gi|256685720|gb|ACV08613.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Jonesia
           denitrificans DSM 20603]
          Length = 425

 Score = 39.7 bits (91), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---ED 105
           A  ++L +GP G GKT LAQ +AR L V F       + +AG    D+  +L  L    D
Sbjct: 114 AKSNILLIGPTGCGKTYLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAAD 173

Query: 106 RDV-------LFIDEIHRLS 118
            DV       ++IDEI +++
Sbjct: 174 FDVKKAETGIIYIDEIDKIA 193


>gi|227505941|ref|ZP_03935990.1| cell division protein FtsH [Corynebacterium striatum ATCC 6940]
 gi|227197463|gb|EEI77511.1| cell division protein FtsH [Corynebacterium striatum ATCC 6940]
          Length = 750

 Score = 39.7 bits (91), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 203 VLLYGPPGTGKTLLARAVAGEAGVPFFSISG 233


>gi|255070529|ref|XP_002507346.1| AAA ATPase [Micromonas sp. RCC299]
 gi|226522621|gb|ACO68604.1| AAA ATPase [Micromonas sp. RCC299]
          Length = 770

 Score = 39.7 bits (91), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 52/103 (50%), Gaps = 20/103 (19%)

Query: 56  HVLFVGPPGLGKTTLAQVVA---RELGVNFR-----STSGPVIAKAGDLAALLTNLEDRD 107
           H++FVG PG GKTT+A++VA   R LGV  R     +    ++A      AL T    +D
Sbjct: 541 HMIFVGNPGTGKTTVARIVANLMRALGVLRRGHLVEADRSSLVAGYSGQTALKTKAVVQD 600

Query: 108 ----VLFIDEIHRL------SIIVE--EILYPAMEDFQLDLMV 138
               VLF+DE + L      S   E  + L   MED + DL+V
Sbjct: 601 ALGGVLFLDEAYALVSGDNDSFGKEALDTLMKEMEDHREDLVV 643



 Score = 37.0 bits (84), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 14/80 (17%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI-AKAGDLAAL----------- 99
           E   H++  GP G GK+ LAQ++AR +  +  S  GP+I A   DL ++           
Sbjct: 237 EPAPHIVLAGPSGSGKSLLAQLLARIISDHDVSRHGPLIKASKNDLISIGRSPGRTAELV 296

Query: 100 LTNLEDRD--VLFIDEIHRL 117
           +   E  +  VL ID+ HRL
Sbjct: 297 IQQCEKAEGGVLLIDDFHRL 316


>gi|222637668|gb|EEE67800.1| hypothetical protein OsJ_25538 [Oryza sativa Japonica Group]
          Length = 784

 Score = 39.7 bits (91), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 19/35 (54%), Positives = 22/35 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA 91
           +L  GPPG GKT LA+ VA E G NF + S   IA
Sbjct: 520 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSIA 554


>gi|315231037|ref|YP_004071473.1| cell division FtsH-like protein [Thermococcus barophilus MP]
 gi|315184065|gb|ADT84250.1| cell division FtsH-like protein [Thermococcus barophilus MP]
          Length = 796

 Score = 39.7 bits (91), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GD----LAALLTNLEDR--DV 108
           VL  GPPG GKT LA+ VA E   +F + +GP I     G+    L  +    E+    +
Sbjct: 219 VLLYGPPGTGKTLLAKAVANEANAHFIAINGPEIMSKYYGESEERLREVFKEAEENAPSI 278

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 279 IFIDEIDAIA 288



 Score = 37.0 bits (84), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 20/34 (58%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT LA+ VA E   NF    GP +
Sbjct: 554 ILLYGPPGTGKTLLAKAVATESEANFIGIRGPEV 587


>gi|153006600|ref|YP_001380925.1| DNA polymerase III subunits gamma/tau [Anaeromyxobacter sp.
           Fw109-5]
 gi|152030173|gb|ABS27941.1| DNA polymerase III, subunits gamma and tau [Anaeromyxobacter sp.
           Fw109-5]
          Length = 606

 Score = 39.7 bits (91), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 54/121 (44%), Gaps = 18/121 (14%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+   E +GQ      L   ++  +     L H  LF GP G+GKTT A++VA+ L   
Sbjct: 11  RPQQFGEMSGQQHVVRTLSNALKTGQ-----LAHAFLFTGPRGVGKTTTARLVAKALNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDE-----IHRLSIIVEEILY-PAMEDFQ 133
                GP     G     +   E R  DV+ ID      +  +  IVE + Y PA + ++
Sbjct: 66  ----KGPTAEPCGACTPCVEIAEGRAVDVVEIDAASNNGVDNVRDIVEAVKYRPARDRYK 121

Query: 134 L 134
           +
Sbjct: 122 V 122


>gi|139473596|ref|YP_001128312.1| DNA polymerase III subunits gamma and tau [Streptococcus pyogenes
           str. Manfredo]
 gi|306827119|ref|ZP_07460411.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus pyogenes
           ATCC 10782]
 gi|134271843|emb|CAM30078.1| DNA polymerase III subunit gamma/tau [Streptococcus pyogenes str.
           Manfredo]
 gi|304430672|gb|EFM33689.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus pyogenes
           ATCC 10782]
          Length = 556

 Score = 39.7 bits (91), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 8/91 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           R +T +E  GQ    + LK  +E+ K     + H  LF GP G GKT+ A++ A+ +   
Sbjct: 10  RSQTFDEMVGQSVISTTLKQAVESGK-----ISHAYLFSGPRGTGKTSAAKIFAKAMNCP 64

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID 112
            +    P      D+   +TN    DV+ ID
Sbjct: 65  NQVDGEP--CNQCDICRDITNGSLEDVIEID 93


>gi|126734140|ref|ZP_01749887.1| ATP-dependent Clp protease, ATP-binding subunit ClpA, putative
           [Roseobacter sp. CCS2]
 gi|126717006|gb|EBA13870.1| ATP-dependent Clp protease, ATP-binding subunit ClpA, putative
           [Roseobacter sp. CCS2]
          Length = 759

 Score = 39.7 bits (91), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 72/163 (44%), Gaps = 23/163 (14%)

Query: 10  RNVSQEDADISLLRPRTLEEFT-GQVEACSNLKVFIEAAKAR----AEALDHVLFVGPPG 64
           +NVS++DA++     ++L+    GQ  A   L   I+ A+A      + + + LF GP G
Sbjct: 433 KNVSKDDAEVLKDLEKSLKRVVFGQDTAIEALSSAIKLARAGLREPEKPIGNYLFAGPTG 492

Query: 65  LGKTTLAQVVARELGVNF---------------RSTSGPVIAKAGDLAALLTNLEDRD-- 107
           +GKT +A+ +A  LGV                 R    P      D   +LT+  D++  
Sbjct: 493 VGKTEVAKQLADTLGVELMRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGMLTDGVDQNPH 552

Query: 108 -VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKI 149
            VL +DE+ +    V  IL   M+  +L    G     R+V I
Sbjct: 553 CVLLLDEMEKAHPDVYNILLQVMDHGKLTDHNGRTTDFRNVII 595


>gi|126466181|ref|YP_001041290.1| TBP-interacting protein TIP49 [Staphylothermus marinus F1]
 gi|126015004|gb|ABN70382.1| TBP-interacting protein TIP49 [Staphylothermus marinus F1]
          Length = 451

 Score = 39.7 bits (91), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 2/63 (3%)

Query: 30  FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN--FRSTSG 87
             GQ+EA     + +   K    A   +L VGPPG GKT +A  +ARELG +  F + SG
Sbjct: 39  LVGQLEAREAAGIVVNMIKEGRIAGRGILLVGPPGTGKTAIAIAIARELGEDTPFVAMSG 98

Query: 88  PVI 90
             I
Sbjct: 99  SEI 101


>gi|116515167|ref|YP_802796.1| ATP-dependent protease [Buchnera aphidicola str. Cc (Cinara cedri)]
 gi|116257021|gb|ABJ90703.1| ATP-dependent protease [Buchnera aphidicola str. Cc (Cinara cedri)]
          Length = 600

 Score = 39.7 bits (91), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           +L VGPPG GKT LA+ +A E  V F + SG    +   G  AA + N+ +        +
Sbjct: 188 ILMVGPPGTGKTLLAKAIAGEANVPFFTISGSDFVEMFVGVGAARVRNMFENSRKYAPCI 247

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 248 IFIDEI 253


>gi|114649253|ref|XP_509610.2| PREDICTED: katanin p60 subunit A-like 1 isoform 2 [Pan troglodytes]
 gi|332841116|ref|XP_003314143.1| PREDICTED: katanin p60 subunit A-like 1 isoform 1 [Pan troglodytes]
          Length = 490

 Score = 39.7 bits (91), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL VGPPG GKT LA+ VA E G  F + S   +
Sbjct: 244 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTL 277


>gi|110834072|ref|YP_692931.1| ATP-dependent protease ATP-binding subunit ClpX [Alcanivorax
           borkumensis SK2]
 gi|123345580|sp|Q0VQ89|CLPX_ALCBS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|110647183|emb|CAL16659.1| ATP-dependent Clp protease, ATP-binding subunitClpX [Alcanivorax
           borkumensis SK2]
          Length = 426

 Score = 39.7 bits (91), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LA+ +AR L V F       + +AG +   + N+            
Sbjct: 116 NILLIGPTGSGKTLLAETLARMLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDV 175

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 176 DKAQRGIVYIDEIDKIS 192


>gi|90657569|gb|ABD96869.1| hypothetical protein [Cleome spinosa]
          Length = 635

 Score = 39.7 bits (91), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 26/53 (49%), Positives = 29/53 (54%)

Query: 34  VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTS 86
           +E  S L+  I   K  A     VL VGPPG GKT LA+ VA E GV F S S
Sbjct: 360 MEIVSCLQGSINYRKLGARLPRGVLLVGPPGTGKTLLARAVAGEAGVPFFSVS 412


>gi|260905554|ref|ZP_05913876.1| cell division protein [Brevibacterium linens BL2]
          Length = 724

 Score = 39.7 bits (91), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 1/88 (1%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKA-RAEALDHVLF 59
           MM+     ++ V++E+ D++      ++E   ++E         E  KA  A+    VL 
Sbjct: 153 MMNFGKSKAKLVNKENPDVTFKDVAGVDEALEELEEIKEFLAEPEKFKAVGAKIPKGVLL 212

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSG 87
            G PG GKT LA+ VA E GV F S SG
Sbjct: 213 YGQPGTGKTLLAKAVAGEAGVPFYSISG 240


>gi|85014379|ref|XP_955685.1| replication factor C [Encephalitozoon cuniculi GB-M1]
 gi|74630071|sp|Q8SQM0|RFC4_ENCCU RecName: Full=Replication factor C subunit 4; Short=Replication
          factor C4
 gi|19171379|emb|CAD27104.1| REPLICATION FACTOR C (ACTIVATOR 1) 37kDa SUBUNIT [Encephalitozoon
          cuniculi GB-M1]
          Length = 309

 Score = 39.7 bits (91), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 5/63 (7%)

Query: 16 DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
          D  ++  +P  +++  G       + + IE+       + H+LF GPPG GKTT A+++A
Sbjct: 2  DLLVNKYQPSEIQDIVGNEATMELVSLMIESRD-----MPHLLFTGPPGTGKTTCAKILA 56

Query: 76 REL 78
          R L
Sbjct: 57 RRL 59


>gi|21221074|ref|NP_626853.1| ATP-dependent protease ATP-binding subunit ClpX [Streptomyces
           coelicolor A3(2)]
 gi|23813896|sp|Q9F316|CLPX_STRCO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|10280517|emb|CAC09993.1| ATP dependent Clp Protease ATP binding subunit [Streptomyces
           coelicolor A3(2)]
          Length = 428

 Score = 39.7 bits (91), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 59/133 (44%), Gaps = 35/133 (26%)

Query: 21  LLRPRTLEEF-----TGQVEACSNLKVFIE------------AAKARAEALD----HVLF 59
           L +PR + EF      GQ  A   L V +              A+ R +A++    ++L 
Sbjct: 61  LPKPREIYEFLESYVVGQEAAKKALSVAVYNHYKRVQAGENGGAQGREDAIELAKSNILL 120

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDV---- 108
           +GP G GKT LAQ +AR L V F       + +AG +   + N+        D DV    
Sbjct: 121 LGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKKAE 180

Query: 109 ---LFIDEIHRLS 118
              ++IDEI +++
Sbjct: 181 TGIIYIDEIDKVA 193


>gi|117927369|ref|YP_871920.1| ATP-dependent metalloprotease FtsH [Acidothermus cellulolyticus
           11B]
 gi|310943112|sp|A0LR74|FTSH_ACIC1 RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|117647832|gb|ABK51934.1| ATP-dependent metalloprotease FtsH [Acidothermus cellulolyticus
           11B]
          Length = 666

 Score = 39.7 bits (91), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT +A+ VA E GV F S +G
Sbjct: 215 VLMVGPPGTGKTLMARAVAGEAGVPFLSVTG 245


>gi|116753783|ref|YP_842901.1| replication factor C large subunit [Methanosaeta thermophila PT]
 gi|121693813|sp|A0B6D7|RFCL_METTP RecName: Full=Replication factor C large subunit; Short=RFC large
          subunit; AltName: Full=Clamp loader large subunit
 gi|116665234|gb|ABK14261.1| replication factor C large subunit [Methanosaeta thermophila PT]
          Length = 467

 Score = 39.7 bits (91), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 33/60 (55%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
          RP+ L+   G  +A S L+ +  A +     +  ++  GPPG+GKT+ A  +A E+  ++
Sbjct: 9  RPKNLDGILGNAKAVSELRAWAMAWEKGRPEVKCLILYGPPGVGKTSAALALASEMDWDY 68


>gi|219668752|ref|YP_002459187.1| ATPase AAA [Desulfitobacterium hafniense DCB-2]
 gi|219539012|gb|ACL20751.1| AAA ATPase central domain protein [Desulfitobacterium hafniense
           DCB-2]
          Length = 321

 Score = 39.7 bits (91), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 82/196 (41%), Gaps = 42/196 (21%)

Query: 40  LKVFIEAAKAR------AEALD-HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI-A 91
           ++ +IE  K R      AE L  H++F G PG GKTT+A+++ R          G +I  
Sbjct: 74  IQAYIEIQKRRTREKLVAEPLVLHMIFRGNPGTGKTTVARLIGRLFKEMEVLQKGHIIEC 133

Query: 92  KAGDLAALL---TNLEDRD--------VLFIDEIHRLSIIVE--------EILYPAMEDF 132
           +  DL       T  + RD        +LFIDE + L+   E        + L  AMED 
Sbjct: 134 ERADLVGEYIGHTAQKTRDMVKKALGGILFIDEAYSLARGGEKDFGKEAIDALVKAMEDH 193

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP-LQDRFGIPIRLNFYEIEDLKTI 191
           + DL++         K  +  F          L TNP L+ RF I I    Y IE+L +I
Sbjct: 194 KTDLIL----ILAGYKHEMEWF----------LQTNPGLRSRFPIHIDFPDYSIEELLSI 239

Query: 192 VQRGAKLTGLAVTDEA 207
                K      T EA
Sbjct: 240 GDSMLKTRQYQFTAEA 255


>gi|328767372|gb|EGF77422.1| hypothetical protein BATDEDRAFT_5010 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 203

 Score = 39.7 bits (91), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFR--STSGPVIAKAGD----LAALLTNLEDRD--V 108
           VL  GPPG GKT +A+ VA+E G  F   S S  V    GD    LA    N   R   +
Sbjct: 16  VLLYGPPGTGKTLIARAVAKESGAEFMVLSLSDLVHGHIGDSEKALAEAFKNARKRAPCI 75

Query: 109 LFIDEI 114
           +F+DEI
Sbjct: 76  MFLDEI 81


>gi|315655900|ref|ZP_07908798.1| cell division protein FtsH [Mobiluncus curtisii ATCC 51333]
 gi|315489964|gb|EFU79591.1| cell division protein FtsH [Mobiluncus curtisii ATCC 51333]
          Length = 759

 Score = 39.7 bits (91), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 223 VLLYGPPGTGKTLLARAVAGEAGVPFFSMSG 253


>gi|315650624|ref|ZP_07903684.1| ATP-dependent protease La [Eubacterium saburreum DSM 3986]
 gi|315487121|gb|EFU77443.1| ATP-dependent protease La [Eubacterium saburreum DSM 3986]
          Length = 763

 Score = 39.7 bits (91), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 63/264 (23%), Positives = 108/264 (40%), Gaps = 38/264 (14%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           +  VGPPG GKT++A+ VA+ LG  + R + G V  +A              G +   + 
Sbjct: 344 LCLVGPPGTGKTSIAKSVAKALGRKYVRISLGGVGDEAEIRGHRRTYVGAMPGRIVEAIK 403

Query: 102 NLE-DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSA-----RSVKINLSRFT 155
           N + +  +L +DEI + S   +  +  A+    L+++ GE           + ++LS+  
Sbjct: 404 NAKVENPLLLLDEIDKTSRDYKGDVSSAL----LEVLDGEQNKTFRDRYLEIPLDLSKVL 459

Query: 156 LIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL----KTIVQRGAKLTGLAVTDEAACEI 211
            IA    +  +  PL DR  I    ++ E E      K +V +  K  GL   D +  + 
Sbjct: 460 FIATANTLDTIPRPLLDRMDIIEISSYTENEKFHIAKKYLVPKEIKTNGLEDIDMSFSDK 519

Query: 212 AMRS--RGTPRIAG--RLLRRVRDFA-----EVAHAKTITREIADAALLRLAIDKMGFDQ 262
           A++       R AG   L RR+ D       E    K   +    +    L  +K+ FD+
Sbjct: 520 AIKKLIHNYTREAGVRNLSRRIGDICRKCARESLEGKKKFKITEKSVYKYLGKEKVRFDE 579

Query: 263 LDLRYLTMIARNFGGGPVGIETIS 286
           +       +        VG +T+S
Sbjct: 580 IKKEPQVGVVTGLAWTSVGGDTLS 603


>gi|300871007|ref|YP_003785879.1| ATP-dependent metalloprotease FtsH [Brachyspira pilosicoli 95/1000]
 gi|300688707|gb|ADK31378.1| ATP-dependent metalloprotease, FtsH [Brachyspira pilosicoli
           95/1000]
          Length = 698

 Score = 39.7 bits (91), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E  V F S SG
Sbjct: 215 VLLVGPPGTGKTLLAKAVAGEANVPFFSMSG 245


>gi|297287127|ref|XP_002803097.1| PREDICTED: replication factor C subunit 4-like isoform 1 [Macaca
          mulatta]
 gi|297287129|ref|XP_002803098.1| PREDICTED: replication factor C subunit 4-like isoform 2 [Macaca
          mulatta]
          Length = 363

 Score = 39.7 bits (91), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+ ++E   Q E  + LK  +E A      L ++LF GPPG GKT+     AREL
Sbjct: 45 RPKCVDEVAFQEEVVAVLKKSLEGAD-----LPNLLFYGPPGTGKTSTILAAAREL 95


>gi|302417888|ref|XP_003006775.1| ATPase WRNIP1 [Verticillium albo-atrum VaMs.102]
 gi|261354377|gb|EEY16805.1| ATPase WRNIP1 [Verticillium albo-atrum VaMs.102]
          Length = 458

 Score = 39.7 bits (91), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 70/152 (46%), Gaps = 26/152 (17%)

Query: 22  LRPRTLEEFTGQ--VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +RP+ L++  GQ  V     L+  IE  +     +  ++  G  G GKTT+A+ +A   G
Sbjct: 165 MRPQALDDVFGQDLVGPHGVLRSLIETDR-----VPSMILWGGSGTGKTTIARCIAHRAG 219

Query: 80  VNF---RSTSGPV-------IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
             F    +TS  V       +  A DLA  LT    + ++F DEIHR +   +++    +
Sbjct: 220 SRFIELNATSTGVAEVKKMFLEAANDLA--LTGR--KTIIFCDEIHRFTKAQQDVFLKPV 275

Query: 130 EDFQLDLM--VGEGPSARSVKINLSR---FTL 156
           E   + L+    E PS R     LSR   FTL
Sbjct: 276 EAGTITLVGATTENPSFRVGAALLSRCRTFTL 307


>gi|258513583|ref|YP_003189805.1| ATP-dependent metalloprotease FtsH [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257777288|gb|ACV61182.1| ATP-dependent metalloprotease FtsH [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 608

 Score = 39.7 bits (91), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 195 VLLFGPPGTGKTLLARAVAGEAGVPFFSISG 225


>gi|256751328|ref|ZP_05492207.1| Sigma 54 interacting domain protein [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|256749710|gb|EEU62735.1| Sigma 54 interacting domain protein [Thermoanaerobacter ethanolicus
           CCSD1]
          Length = 650

 Score = 39.7 bits (91), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 71/169 (42%), Gaps = 40/169 (23%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKARA----EALDHVLFVGPPGLGKTTLAQVV---ARE 77
           ++L  F   + +  +LKV I  AKA        L H L VGP G GK+ LA+ +   A E
Sbjct: 125 KSLLSFKEIIGSEGSLKVQISLAKAAVLYPPHGL-HTLIVGPSGSGKSQLAEAMYNYAIE 183

Query: 78  LGVNFRSTSGPVIAKAGDLA-------------------------ALLTNLEDRDVLFID 112
            G  F   +  V+    D A                         A L    D  +LF+D
Sbjct: 184 SG-RFNENAPFVVFNCADYADNPQLLMAQLFGYVKGAFTGADTAKAGLVEKADGGILFLD 242

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATT 161
           E+HRL    +EIL+  ++  +   + GE  S R  +I      LIAATT
Sbjct: 243 EVHRLPSEGQEILFYLLDKGKFRRL-GETESTREAQI-----MLIAATT 285


>gi|300362402|ref|ZP_07058578.1| cell division protein FtsH [Lactobacillus gasseri JV-V03]
 gi|300353393|gb|EFJ69265.1| cell division protein FtsH [Lactobacillus gasseri JV-V03]
          Length = 708

 Score = 39.7 bits (91), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 228 VLLEGPPGTGKTLLARAVAGEAGVPFYSISG 258


>gi|224043264|ref|XP_002194459.1| PREDICTED: katanin p60 (ATPase-containing) subunit A 1 [Taeniopygia
           guttata]
          Length = 489

 Score = 39.7 bits (91), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL VGPPG GKT LA+ VA E G  F + S   +
Sbjct: 243 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTL 276


>gi|207343687|gb|EDZ71076.1| YKL197Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 1043

 Score = 39.7 bits (91), Expect = 0.71,   Method: Composition-based stats.
 Identities = 18/34 (52%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  G PG GKT LA  VA++ G+NF S  GP I
Sbjct: 734 ILLYGYPGCGKTLLASAVAQQCGLNFISVKGPEI 767


>gi|198463535|ref|XP_001352857.2| GA11333 [Drosophila pseudoobscura pseudoobscura]
 gi|198151299|gb|EAL30358.2| GA11333 [Drosophila pseudoobscura pseudoobscura]
          Length = 729

 Score = 39.7 bits (91), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRD---V 108
           VL  GPPG  KTT+A+ +A+E  + F +TS      P +  A      + +L  ++   +
Sbjct: 497 VLLYGPPGCAKTTIAKCLAKEANMTFIATSAAEVYSPYVGCAERYITRMFHLARKNAPCL 556

Query: 109 LFIDEIHRL 117
           +F+DEI  L
Sbjct: 557 IFLDEIDSL 565


>gi|195395914|ref|XP_002056579.1| GJ11019 [Drosophila virilis]
 gi|194143288|gb|EDW59691.1| GJ11019 [Drosophila virilis]
          Length = 577

 Score = 39.7 bits (91), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108
           VL VGPPG GKT LA+ VA E G  F + S   +     G+   +      +        
Sbjct: 334 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSATLTSKYRGESEKMVRLLFEMARFYAPST 393

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 394 IFIDEIDSL 402


>gi|193587013|ref|XP_001943645.1| PREDICTED: ATPase family AAA domain-containing protein 1-B-like
           [Acyrthosiphon pisum]
          Length = 359

 Score = 39.7 bits (91), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 34/67 (50%), Gaps = 10/67 (14%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF---------RSTSGPVIAKAGDLAALLTNLEDRD 107
           VL  GPPG GKT +A+  ARE G+NF             G     AG + +L   L+   
Sbjct: 122 VLLHGPPGCGKTMIAKATAREAGMNFLYLDVSLLTDKWYGESQKLAGAVFSLAQKLQPC- 180

Query: 108 VLFIDEI 114
           ++FIDEI
Sbjct: 181 IIFIDEI 187


>gi|183985414|ref|YP_001853705.1| hypothetical protein MMAR_5443 [Mycobacterium marinum M]
 gi|183178740|gb|ACC43850.1| conserved hypothetical membrane protein [Mycobacterium marinum M]
          Length = 573

 Score = 39.7 bits (91), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 8/78 (10%)

Query: 4   REGLLSRNVSQEDADISLLRPRT-LEEFTGQVEACSNLKVFIEAAKAR--AEALDHVLFV 60
           RE LL+    + D  I L R ++ LE +       + +   I  AK    A+   H++F 
Sbjct: 279 REKLLAEAQEELDRQIGLSRVKSQLERYR-----AATMMARIREAKGMKVAQPSKHMIFT 333

Query: 61  GPPGLGKTTLAQVVAREL 78
           GPPG GKTT+A+VVA  L
Sbjct: 334 GPPGTGKTTIARVVANML 351


>gi|220919476|ref|YP_002494780.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219957330|gb|ACL67714.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 618

 Score = 39.7 bits (91), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 38/69 (55%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           VL VGPPG GKT LA+ VA E  V F S SG    +   G  AA + +L ++       +
Sbjct: 197 VLLVGPPGTGKTLLAKAVAGEASVPFFSISGSEFVEMFVGVGAARVRDLFEQARAKAPAI 256

Query: 109 LFIDEIHRL 117
           +FIDE+  L
Sbjct: 257 IFIDELDAL 265


>gi|154293396|ref|XP_001547229.1| hypothetical protein BC1G_14324 [Botryotinia fuckeliana B05.10]
 gi|150845305|gb|EDN20498.1| hypothetical protein BC1G_14324 [Botryotinia fuckeliana B05.10]
          Length = 413

 Score = 39.7 bits (91), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDR------DV 108
           +L  GPPG  KT  AQ VA E+G NF +  G  +++K  GD    + N+  R       +
Sbjct: 188 LLLYGPPGCSKTLTAQAVATEMGFNFFAVKGAELLSKYVGDSERAVRNVFSRARAAAPSI 247

Query: 109 LFIDEIHRL 117
           +F DEI  +
Sbjct: 248 IFFDEIESI 256


>gi|57529590|ref|NP_001006550.1| replication factor C subunit 4 [Gallus gallus]
 gi|53136906|emb|CAG32782.1| hypothetical protein RCJMB04_37a17 [Gallus gallus]
          Length = 359

 Score = 39.7 bits (91), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+ ++E   Q E  + LK  +E A      L ++LF GPPG GKT+     AREL
Sbjct: 43 RPKNVDEVAFQDEVVAVLKKSLEGAD-----LPNLLFYGPPGTGKTSTILAAAREL 93


>gi|58337154|ref|YP_193739.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus
           acidophilus NCFM]
 gi|227903730|ref|ZP_04021535.1| ATP-dependent protease ATP-binding subunit [Lactobacillus
           acidophilus ATCC 4796]
 gi|58254471|gb|AAV42708.1| ATP-dependent protease [Lactobacillus acidophilus NCFM]
 gi|227868617|gb|EEJ76038.1| ATP-dependent protease ATP-binding subunit [Lactobacillus
           acidophilus ATCC 4796]
          Length = 420

 Score = 39.7 bits (91), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 14/83 (16%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD--------LAALLTNLE--- 104
           ++  +GP G GKT LAQ +AR L V F       + +AG         L  LL N +   
Sbjct: 111 NIAMIGPTGSGKTYLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDL 170

Query: 105 ---DRDVLFIDEIHRLSIIVEEI 124
               R +++IDEI ++S   E +
Sbjct: 171 ERAQRGIIYIDEIDKISKKSENV 193


>gi|33864599|ref|NP_896158.1| ATP-dependent protease ATP-binding subunit ClpX [Synechococcus sp.
           WH 8102]
 gi|46576440|sp|Q7UA37|CLPX_SYNPX RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|33632122|emb|CAE06578.1| Putative ATP-dependent protease ATP-binding subunit ClpX
           [Synechococcus sp. WH 8102]
          Length = 449

 Score = 39.7 bits (91), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 4/73 (5%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNLEDRDVLFI 111
           ++L +GP G GKT LAQ +A  L V F       + +AG    D+  +L  L  +  + +
Sbjct: 137 NILLIGPTGCGKTLLAQTLAEMLDVPFAVADATTLTEAGYVGEDVENILLRLLQKADMDV 196

Query: 112 DEIHRLSIIVEEI 124
           D+  R  I ++EI
Sbjct: 197 DQAQRGIIYIDEI 209


>gi|324501967|gb|ADY40871.1| ATP-dependent zinc metalloprotease YME1 [Ascaris suum]
          Length = 729

 Score = 39.7 bits (91), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 54/114 (47%), Gaps = 9/114 (7%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEA-CSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           + V  ED  ++    R ++E   +VE   S L+     ++        VL VGPPG GKT
Sbjct: 237 QEVKPEDVTVTFDDVRGMDEAKKEVEEIVSYLRDPDRYSRLGGRLPKGVLLVGPPGTGKT 296

Query: 69  TLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEI 114
            LA+ +A E  V F  TSG    +   G  A  + +L +R       ++FIDEI
Sbjct: 297 LLARAIAGEAQVPFFHTSGSEFDEVLVGQGARRVRDLFERAKQRAPCIIFIDEI 350


>gi|320546908|ref|ZP_08041210.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           equinus ATCC 9812]
 gi|320448426|gb|EFW89167.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           equinus ATCC 9812]
          Length = 409

 Score = 39.7 bits (91), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +A+ L V F       + +AG    D+  +L  L        
Sbjct: 113 NILLIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADFNI 172

Query: 104 --EDRDVLFIDEIHRLS 118
              +R ++++DEI +++
Sbjct: 173 ERAERGIIYVDEIDKIA 189


>gi|302390301|ref|YP_003826122.1| ATP-dependent protease LonB [Thermosediminibacter oceani DSM 16646]
 gi|302200929|gb|ADL08499.1| ATP-dependent protease LonB [Thermosediminibacter oceani DSM 16646]
          Length = 555

 Score = 39.7 bits (91), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 8/108 (7%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           R +S  +      RP   E+  GQ E    LK  +     +     HV+  GPPG+GKT 
Sbjct: 52  REISLTEPLAEKTRPTKFEDIIGQEEGLKALKAALCGPNPQ-----HVIIYGPPGIGKTA 106

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVL--FIDEIH 115
            A++V  E      S  GP  AK  ++ A +   ++R +    I  +H
Sbjct: 107 AARLVLEEAKKTPGSPFGP-DAKFVEVDATIARFDERGIADPLIGSVH 153


>gi|296131747|ref|YP_003638994.1| ATP-dependent metalloprotease FtsH [Thermincola sp. JR]
 gi|296030325|gb|ADG81093.1| ATP-dependent metalloprotease FtsH [Thermincola potens JR]
          Length = 646

 Score = 39.7 bits (91), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           EE    VE   + K F E     A+    VL  GPPG GKT LA+ VA E GV F + SG
Sbjct: 172 EELQEVVEFLKHPKKFNELG---AKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISG 228


>gi|297741773|emb|CBI33002.3| unnamed protein product [Vitis vinifera]
          Length = 596

 Score = 39.7 bits (91), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 81/196 (41%), Gaps = 21/196 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGV-----NFRSTSGPVIAKA----GDLAALLTNLEDRD 107
           VLF GPPG GKT+ A+V+A + GV        S       ++    G +        +  
Sbjct: 361 VLFEGPPGTGKTSCARVIANQAGVPLVYLPLESIMSKYYGESERLLGKVFVHANEFPEGA 420

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           ++F+DE+   ++     ++ A     L +++ +       K    +  +IAAT R   L 
Sbjct: 421 IVFLDEVDSFAVSRSREMHEATRRI-LSVILRQIDGFEQDK----KVVVIAATNRKQDLD 475

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             L  RF   I     +  D + I  + AK     +T+    E A  + G   ++GR +R
Sbjct: 476 PALMSRFDSMITFGLPDNHDRQKIAAQFAK----HLTESELVEFATATEG---MSGRDIR 528

Query: 228 RVRDFAEVAHAKTITR 243
            +   AE   A  + R
Sbjct: 529 DICQQAERHWASKVIR 544


>gi|242046886|ref|XP_002461189.1| hypothetical protein SORBIDRAFT_02g042560 [Sorghum bicolor]
 gi|241924566|gb|EER97710.1| hypothetical protein SORBIDRAFT_02g042560 [Sorghum bicolor]
          Length = 1060

 Score = 39.7 bits (91), Expect = 0.72,   Method: Composition-based stats.
 Identities = 19/35 (54%), Positives = 22/35 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA 91
           +L  GPPG GKT LA+ VA E G NF + S   IA
Sbjct: 796 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSIA 830


>gi|294884287|ref|XP_002771125.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
 gi|239874403|gb|EER02941.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
          Length = 288

 Score = 39.7 bits (91), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 27/40 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDL 96
           +L VGPPG GKT++A+ +A+ LG  F   S   ++ AG+L
Sbjct: 222 LLLVGPPGCGKTSIAESIAKALGRRFEMVSLGGLSDAGEL 261


>gi|224060747|ref|XP_002196271.1| PREDICTED: replication factor C (activator 1) 4, 37kDa
          [Taeniopygia guttata]
          Length = 362

 Score = 39.7 bits (91), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+ ++E   Q E  + LK  +E A      L ++LF GPPG GKT+     AREL
Sbjct: 43 RPKNVDEVAFQDEVVAVLKKSLEGAD-----LPNLLFYGPPGTGKTSTILAAAREL 93


>gi|218200238|gb|EEC82665.1| hypothetical protein OsI_27291 [Oryza sativa Indica Group]
          Length = 1081

 Score = 39.7 bits (91), Expect = 0.72,   Method: Composition-based stats.
 Identities = 19/35 (54%), Positives = 22/35 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA 91
           +L  GPPG GKT LA+ VA E G NF + S   IA
Sbjct: 817 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSIA 851


>gi|116628950|ref|YP_814122.1| ATP-dependent Zn protease [Lactobacillus gasseri ATCC 33323]
 gi|238853549|ref|ZP_04643921.1| ATP-dependent metallopeptidase HflB [Lactobacillus gasseri 202-4]
 gi|282852628|ref|ZP_06261970.1| ATP-dependent metallopeptidase HflB [Lactobacillus gasseri 224-1]
 gi|116094532|gb|ABJ59684.1| membrane protease FtsH catalytic subunit [Lactobacillus gasseri
           ATCC 33323]
 gi|238833845|gb|EEQ26110.1| ATP-dependent metallopeptidase HflB [Lactobacillus gasseri 202-4]
 gi|282556370|gb|EFB61990.1| ATP-dependent metallopeptidase HflB [Lactobacillus gasseri 224-1]
          Length = 708

 Score = 39.7 bits (91), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 228 VLLEGPPGTGKTLLARAVAGEAGVPFYSISG 258


>gi|110680062|ref|YP_683069.1| ATP-dependent protease ATP-binding subunit ClpX [Roseobacter
           denitrificans OCh 114]
 gi|123361806|sp|Q165G0|CLPX_ROSDO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|109456178|gb|ABG32383.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Roseobacter
           denitrificans OCh 114]
          Length = 421

 Score = 39.7 bits (91), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+         
Sbjct: 110 AKSNILLIGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSSE 169

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDE+ +++
Sbjct: 170 YNVERAQRGIVYIDEVDKIT 189


>gi|111658475|ref|ZP_01409148.1| hypothetical protein SpneT_02000375 [Streptococcus pneumoniae
           TIGR4]
          Length = 372

 Score = 39.7 bits (91), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +A+ L V F       + +AG    D+  +L  L        
Sbjct: 76  NILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQVADFNI 135

Query: 104 --EDRDVLFIDEIHRLS 118
              +R ++++DEI +++
Sbjct: 136 ERAERGIIYVDEIDKIA 152


>gi|152967458|ref|YP_001363242.1| ATP-dependent protease ATP-binding subunit ClpX [Kineococcus
           radiotolerans SRS30216]
 gi|189044138|sp|A6WDT9|CLPX_KINRD RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|151361975|gb|ABS04978.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Kineococcus
           radiotolerans SRS30216]
          Length = 430

 Score = 39.7 bits (91), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 34/134 (25%)

Query: 19  ISLLRPRTLEEF-----TGQVEACSNLKVFI-----------EAAKARAEALD----HVL 58
           + L +P+ + +F      GQ  A  +L V +            + K R +A++    ++L
Sbjct: 59  VELPKPKEIFDFLDQYVIGQSSAKKSLAVAVYNHYKRIQVGEPSTKGREDAVEISKSNIL 118

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDV--- 108
            +GP G GKT LAQ +A+ L V F       + +AG +   + N+        D DV   
Sbjct: 119 LIGPTGCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKKA 178

Query: 109 ----LFIDEIHRLS 118
               ++IDE+ +++
Sbjct: 179 ETGIIYIDEVDKIA 192


>gi|331268689|ref|YP_004395181.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum
           BKT015925]
 gi|329125239|gb|AEB75184.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum
           BKT015925]
          Length = 597

 Score = 39.7 bits (91), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 34/65 (52%), Gaps = 8/65 (12%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--VL 109
           L VGPPG GKT LA+ VA E  V F S SG    +      A  +  L    E++   ++
Sbjct: 186 LLVGPPGTGKTLLAKAVAGEAKVPFFSLSGSSFVEMFVGMGAARVRDLFKQAEEKAPCIV 245

Query: 110 FIDEI 114
           FIDEI
Sbjct: 246 FIDEI 250


>gi|310792034|gb|EFQ27561.1| ATPase [Glomerella graminicola M1.001]
          Length = 425

 Score = 39.7 bits (91), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 19/26 (73%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF 82
           VL  GPPG GKT LA+ VARE G +F
Sbjct: 171 VLLYGPPGCGKTMLAKAVARESGASF 196


>gi|296126118|ref|YP_003633370.1| ATP-dependent metalloprotease FtsH [Brachyspira murdochii DSM
           12563]
 gi|296017934|gb|ADG71171.1| ATP-dependent metalloprotease FtsH [Brachyspira murdochii DSM
           12563]
          Length = 701

 Score = 39.7 bits (91), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 1/80 (1%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQV-EACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           +R +++ED  ++       +E   ++ E    LK   +  K  A+    VL VGPPG GK
Sbjct: 168 ARLLTKEDVKVTFKDVEGCKEAKEELQEVVQFLKDASKFTKLGAKIPKGVLLVGPPGTGK 227

Query: 68  TTLAQVVARELGVNFRSTSG 87
           T LA+ VA E  V F S SG
Sbjct: 228 TLLAKAVAGEANVPFFSMSG 247


>gi|300768964|ref|ZP_07078855.1| cell division protein FtsH [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|300493485|gb|EFK28662.1| cell division protein FtsH [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
          Length = 750

 Score = 39.7 bits (91), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           VL  GPPG GKT LA+ VA E GV F S SG    +   G  A+ + +L ++       +
Sbjct: 228 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPSI 287

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 288 IFIDEI 293


>gi|225444466|ref|XP_002267342.1| PREDICTED: hypothetical protein, partial [Vitis vinifera]
          Length = 660

 Score = 39.7 bits (91), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 81/196 (41%), Gaps = 21/196 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGV-----NFRSTSGPVIAKA----GDLAALLTNLEDRD 107
           VLF GPPG GKT+ A+V+A + GV        S       ++    G +        +  
Sbjct: 425 VLFEGPPGTGKTSCARVIANQAGVPLVYLPLESIMSKYYGESERLLGKVFVHANEFPEGA 484

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           ++F+DE+   ++     ++ A     L +++ +       K    +  +IAAT R   L 
Sbjct: 485 IVFLDEVDSFAVSRSREMHEATRRI-LSVILRQIDGFEQDK----KVVVIAATNRKQDLD 539

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             L  RF   I     +  D + I  + AK     +T+    E A  + G   ++GR +R
Sbjct: 540 PALMSRFDSMITFGLPDNHDRQKIAAQFAK----HLTESELVEFATATEG---MSGRDIR 592

Query: 228 RVRDFAEVAHAKTITR 243
            +   AE   A  + R
Sbjct: 593 DICQQAERHWASKVIR 608


>gi|225620270|ref|YP_002721527.1| ATP-dependent metalloprotease FtsH [Brachyspira hyodysenteriae WA1]
 gi|225215089|gb|ACN83823.1| ATP-dependent metalloprotease FtsH [Brachyspira hyodysenteriae WA1]
          Length = 698

 Score = 39.7 bits (91), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E  V F S SG
Sbjct: 213 VLLVGPPGTGKTLLAKAVAGEANVPFFSMSG 243


>gi|284005412|ref|NP_001164961.1| katanin p60 ATPase-containing subunit A-like 1 [Oryctolagus
           cuniculus]
 gi|229621849|sp|B7NZ88|KATL1_RABIT RecName: Full=Katanin p60 ATPase-containing subunit A-like 1;
           Short=Katanin p60 subunit A-like 1; AltName: Full=p60
           katanin-like 1
 gi|216397585|gb|ACJ72829.1| katanin p60 subunit A-like 1, isoform 2 (predicted) [Oryctolagus
           cuniculus]
          Length = 490

 Score = 39.7 bits (91), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL VGPPG GKT LA+ VA E G  F + S   +
Sbjct: 244 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTL 277


>gi|190409646|gb|EDV12911.1| AAA ATPase [Saccharomyces cerevisiae RM11-1a]
 gi|256274284|gb|EEU09191.1| Pex1p [Saccharomyces cerevisiae JAY291]
 gi|259147645|emb|CAY80895.1| Pex1p [Saccharomyces cerevisiae EC1118]
 gi|323347697|gb|EGA81961.1| Pex1p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 1043

 Score = 39.7 bits (91), Expect = 0.73,   Method: Composition-based stats.
 Identities = 18/34 (52%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  G PG GKT LA  VA++ G+NF S  GP I
Sbjct: 734 ILLYGYPGCGKTLLASAVAQQCGLNFISVKGPEI 767


>gi|182417603|ref|ZP_02948925.1| ATP-dependent protease LonB [Clostridium butyricum 5521]
 gi|237668963|ref|ZP_04528947.1| ATP-dependent protease LonB [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182378558|gb|EDT76087.1| ATP-dependent protease LonB [Clostridium butyricum 5521]
 gi|237657311|gb|EEP54867.1| ATP-dependent protease LonB [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 543

 Score = 39.7 bits (91), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 8/66 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP T EE  GQ +    LK  +     +     HV+  GPPG+GKT  A++V  E     
Sbjct: 49  RPSTFEEVVGQEKGIKALKAALCGPNPQ-----HVIIYGPPGVGKTAAARLVLEEAK--- 100

Query: 83  RSTSGP 88
           R+ S P
Sbjct: 101 RAMSSP 106


>gi|281182402|ref|NP_001162539.1| katanin p60 ATPase-containing subunit A-like 1 [Papio anubis]
 gi|238687341|sp|A9RA82|KATL1_PAPAN RecName: Full=Katanin p60 ATPase-containing subunit A-like 1;
           Short=Katanin p60 subunit A-like 1; AltName: Full=p60
           katanin-like 1
 gi|162415898|gb|ABX89264.1| katanin p60 subunit A-like 1, isoform 2 (predicted) [Papio anubis]
          Length = 490

 Score = 39.7 bits (91), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL VGPPG GKT LA+ VA E G  F + S   +
Sbjct: 244 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTL 277


>gi|156379406|ref|XP_001631448.1| predicted protein [Nematostella vectensis]
 gi|156218489|gb|EDO39385.1| predicted protein [Nematostella vectensis]
          Length = 401

 Score = 39.7 bits (91), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 6/62 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE-LGVN 81
           RP  L E  G  E  S L+VF     A+   + +++  GPPG GKTT    +AR  LGV+
Sbjct: 60  RPTKLHEIVGNEETVSRLEVF-----AQQGNVPNIIIAGPPGTGKTTSILCLARALLGVS 114

Query: 82  FR 83
            +
Sbjct: 115 LK 116


>gi|151941464|gb|EDN59828.1| AAA ATPase [Saccharomyces cerevisiae YJM789]
          Length = 1043

 Score = 39.7 bits (91), Expect = 0.73,   Method: Composition-based stats.
 Identities = 18/34 (52%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  G PG GKT LA  VA++ G+NF S  GP I
Sbjct: 734 ILLYGYPGCGKTLLASAVAQQCGLNFISVKGPEI 767


>gi|124359471|gb|ABN05909.1| Peptidase S26A, signal peptidase I; AAA ATPase; Peptidase M,
           neutral zinc metallopeptidases, zinc-binding site;
           Peptidase M41, FtsH extracellular [Medicago truncatula]
          Length = 569

 Score = 39.7 bits (91), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 7/69 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T E+  G  EA  + +  +E  K         A+    VL VGPPG GKT LA+ +A E 
Sbjct: 207 TFEDIAGVDEAKQDFQEIVEFLKTPEKFSSVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA 266

Query: 79  GVNFRSTSG 87
            V F S SG
Sbjct: 267 KVPFFSLSG 275


>gi|115376196|ref|ZP_01463438.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Stigmatella
           aurantiaca DW4/3-1]
 gi|115366769|gb|EAU65762.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Stigmatella
           aurantiaca DW4/3-1]
          Length = 320

 Score = 39.7 bits (91), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +AR L V F       + +AG    D+  ++ NL        
Sbjct: 15  NILLIGPTGSGKTLLAQSLARFLNVPFTIADATSLTEAGYVGEDVENIIQNLLHNADYDV 74

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI +++
Sbjct: 75  EKAARGIVYIDEIDKIA 91


>gi|109946680|ref|YP_663908.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Helicobacter
           acinonychis str. Sheeba]
 gi|109713901|emb|CAJ98909.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Helicobacter
           acinonychis str. Sheeba]
          Length = 739

 Score = 39.7 bits (91), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 47/108 (43%), Gaps = 18/108 (16%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFR------------------STSGPVIAKAGDLAAL 99
           LFVGP G+GKT LA+ +A  LG++F                   S SG V  + G L   
Sbjct: 478 LFVGPSGVGKTELAKELALNLGLHFERFDMSEYKEAHSVAKLIGSPSGYVGFEQGGLLVN 537

Query: 100 LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSV 147
                   +L +DEI +    V ++L   M++  L   +G   S + V
Sbjct: 538 AIKKHPHCLLLLDEIEKAHTDVYDLLLQVMDNATLSDNLGNKASFKHV 585


>gi|302564445|ref|NP_001181048.1| katanin p60 ATPase-containing subunit A-like 1 [Macaca mulatta]
 gi|109120376|ref|XP_001099323.1| PREDICTED: katanin p60 ATPase-containing subunit A-like 1-like
           isoform 3 [Macaca mulatta]
          Length = 490

 Score = 39.7 bits (91), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL VGPPG GKT LA+ VA E G  F + S   +
Sbjct: 244 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTL 277


>gi|469101|emb|CAA46565.1| ORF2 [Pseudomonas aeruginosa PAO1]
          Length = 263

 Score = 39.7 bits (91), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 16/98 (16%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRD----- 107
           A  H+L    PG+GKTTL+  +AR LG++F+          GD+  L T++ D+D     
Sbjct: 32  ARGHLLIEDLPGMGKTTLSHALARWLGLSFQRIQFTSDLLPGDI--LGTSVFDKDSGQFV 89

Query: 108 ---------VLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
                    ++  DEI+R +   +  L  AME+ Q+ +
Sbjct: 90  FHPGPIFAELVLADEINRATPKSQSALLEAMEEGQVTI 127


>gi|172098|gb|AAA34842.1| ATPase Pas1p [Saccharomyces cerevisiae]
          Length = 1043

 Score = 39.7 bits (91), Expect = 0.73,   Method: Composition-based stats.
 Identities = 18/34 (52%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  G PG GKT LA  VA++ G+NF S  GP I
Sbjct: 734 ILLYGYPGCGKTLLASAVAQQCGLNFISVKGPEI 767


>gi|42518369|ref|NP_964299.1| cell division protein FtsH-like protein [Lactobacillus johnsonii
           NCC 533]
 gi|41582654|gb|AAS08265.1| cell division protein FtsH-like protein [Lactobacillus johnsonii
           NCC 533]
          Length = 708

 Score = 39.7 bits (91), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 228 VLLEGPPGTGKTLLARAVAGEAGVPFYSISG 258


>gi|52080367|ref|YP_079158.1| hypothetical protein BL03237 [Bacillus licheniformis ATCC 14580]
 gi|52785745|ref|YP_091574.1| hypothetical protein BLi01989 [Bacillus licheniformis ATCC 14580]
 gi|52003578|gb|AAU23520.1| SpoVK [Bacillus licheniformis ATCC 14580]
 gi|52348247|gb|AAU40881.1| SpoVK [Bacillus licheniformis ATCC 14580]
          Length = 321

 Score = 39.7 bits (91), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 93/216 (43%), Gaps = 47/216 (21%)

Query: 12  VSQEDADISLLRP--RTLEEFTGQVEACSNLK-----VFI------EAAKARAEALDHVL 58
           + + +A  S+L+   R +    G  E   N+K     +F+      +  KA  +AL H++
Sbjct: 38  LQKNEAKHSILKEIEREMNTLVGMEEMKRNIKEIYAWIFVNKKREEQGLKAGKQAL-HMM 96

Query: 59  FVGPPGLGKTTLAQVVAREL-GVNFRSTSGPVIAKAGDLAALL---TNLEDRD------- 107
           F G PG GKTT+A+++ R    +N  S    + A+  DL       T  + RD       
Sbjct: 97  FKGNPGTGKTTVARLIGRLFYEMNVLSKGHLIEAERADLVGEYIGHTAQKTRDLIKKAMG 156

Query: 108 -VLFIDEIHRLSIIVEEILYPAMEDF---QLDLMVGEGPSARSVKINLSRFTLI-AATTR 162
            +LFIDE + L+   E       +DF    +D +V      R      + F LI A  +R
Sbjct: 157 GILFIDEAYSLARGGE-------KDFGKEAIDTLVKHMEDKR------NEFILILAGYSR 203

Query: 163 VG---LLTNP-LQDRFGIPIRLNFYEIEDLKTIVQR 194
                L  NP LQ RF I I    Y +  L  I +R
Sbjct: 204 EMDHFLSLNPGLQSRFPISIDFPDYSVSQLMDIAKR 239


>gi|21910574|ref|NP_664842.1| DNA polymerase III subunits gamma and tau [Streptococcus pyogenes
           MGAS315]
 gi|21904775|gb|AAM79645.1| DNA polymerase III gamma/tau subunits [Streptococcus pyogenes
           MGAS315]
          Length = 556

 Score = 39.7 bits (91), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 8/91 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           R +T +E  GQ    + LK  +E+ K     + H  LF GP G GKT+ A++ A+ +   
Sbjct: 10  RSQTFDEMVGQSVISTTLKQAVESGK-----ISHAYLFSGPRGTGKTSAAKIFAKAMNCP 64

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID 112
            +    P      D+   +TN    DV+ ID
Sbjct: 65  NQVDGEP--CNQCDICRDITNGSLEDVIEID 93


>gi|6322651|ref|NP_012724.1| Pex1p [Saccharomyces cerevisiae S288c]
 gi|548458|sp|P24004|PEX1_YEAST RecName: Full=Peroxisomal ATPase PEX1; AltName: Full=Peroxin-1;
           AltName: Full=Peroxisomal assembly protein 1; AltName:
           Full=Peroxisome biogenesis protein PAS1
 gi|486351|emb|CAA82041.1| PEX1 [Saccharomyces cerevisiae]
 gi|285813072|tpg|DAA08969.1| TPA: Pex1p [Saccharomyces cerevisiae S288c]
          Length = 1043

 Score = 39.7 bits (91), Expect = 0.73,   Method: Composition-based stats.
 Identities = 18/34 (52%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  G PG GKT LA  VA++ G+NF S  GP I
Sbjct: 734 ILLYGYPGCGKTLLASAVAQQCGLNFISVKGPEI 767


>gi|328872932|gb|EGG21299.1| AAA ATPase domain-containing protein [Dictyostelium fasciculatum]
          Length = 352

 Score = 39.7 bits (91), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GD----LAALLTNLEDRD--V 108
           +L  GPPG GKT+LA+ +ARE G  F S +  +I     G+    + A+ T  E     +
Sbjct: 123 ILLYGPPGTGKTSLAKAIARESGYFFLSINDSLIESKFYGESQKLINAVFTVSEKLQPAI 182

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 183 IFIDEI 188


>gi|326389285|ref|ZP_08210853.1| PTS system transcriptional activator [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325994648|gb|EGD53072.1| PTS system transcriptional activator [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 977

 Score = 39.7 bits (91), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 71/169 (42%), Gaps = 40/169 (23%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKARA----EALDHVLFVGPPGLGKTTLAQVV---ARE 77
           ++L  F   + +  +LKV I  AKA        L H L VGP G GK+ LA+ +   A E
Sbjct: 125 KSLLSFKEIIGSEGSLKVQISLAKAAVLYPPHGL-HTLIVGPSGSGKSQLAEAMYNYAIE 183

Query: 78  LGVNFRSTSGPVIAKAGDLA-------------------------ALLTNLEDRDVLFID 112
            G  F   +  V+    D A                         A L    D  +LF+D
Sbjct: 184 SG-RFNENAPFVVFNCADYADNPQLLMAQLFGYVKGAFTGADTAKAGLVEKADGGILFLD 242

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATT 161
           E+HRL    +EIL+  ++  +   + GE  S R  +I      LIAATT
Sbjct: 243 EVHRLPSEGQEILFYLLDKGKFRRL-GETESTREAQI-----MLIAATT 285


>gi|317144506|ref|XP_001820171.2| protein YME1 [Aspergillus oryzae RIB40]
          Length = 805

 Score = 39.7 bits (91), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108
           VL VGPPG GKT LA+ VA E GV F   SG       V   A  +  L T    +   +
Sbjct: 370 VLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEVYVGVGAKRVRELFTQARSKAPAI 429

Query: 109 LFIDEI 114
           +FIDE+
Sbjct: 430 IFIDEL 435


>gi|300721990|ref|YP_003711270.1| ATPase [Xenorhabdus nematophila ATCC 19061]
 gi|297628487|emb|CBJ89054.1| ATPase, chaperone subunit of serine protease [Xenorhabdus
           nematophila ATCC 19061]
          Length = 423

 Score = 39.7 bits (91), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LA+ +AR L V F       + +AG +   + N+            
Sbjct: 114 NILLIGPTGSGKTLLAETLARYLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 173

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 174 QKAQRGIVYIDEIDKIS 190


>gi|297832780|ref|XP_002884272.1| hypothetical protein ARALYDRAFT_896083 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297330112|gb|EFH60531.1| hypothetical protein ARALYDRAFT_896083 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 821

 Score = 39.7 bits (91), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 10/67 (14%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED---------RD 107
           +LF GPPG GKT LA  +A E+GV F   S   +  +G   A   N+ +           
Sbjct: 270 ILFHGPPGCGKTKLANAIANEVGVPFFKISATEVV-SGVSGASEENIRELFSKAYRTAPS 328

Query: 108 VLFIDEI 114
           ++FIDEI
Sbjct: 329 IVFIDEI 335


>gi|295395009|ref|ZP_06805221.1| ATP-dependent Clp protease ATP-binding subunit [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294972168|gb|EFG48031.1| ATP-dependent Clp protease ATP-binding subunit [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 419

 Score = 39.7 bits (91), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---ED 105
           A  ++L VGP G GKT +AQ +A++L V F       + +AG    D+  +L  L    D
Sbjct: 109 AKSNILMVGPTGSGKTYVAQTLAKKLNVPFAVADATSLTEAGYVGEDVENILLKLLQAAD 168

Query: 106 RDV-------LFIDEIHRLS 118
            DV       ++IDEI ++S
Sbjct: 169 FDVERAQTGIIYIDEIDKIS 188


>gi|289641314|ref|ZP_06473480.1| ATP-dependent metalloprotease FtsH [Frankia symbiont of Datisca
           glomerata]
 gi|289508912|gb|EFD29845.1| ATP-dependent metalloprotease FtsH [Frankia symbiont of Datisca
           glomerata]
          Length = 673

 Score = 39.7 bits (91), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 37/75 (49%), Gaps = 8/75 (10%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLT 101
           +A A+    VL VGPPG GKT LA+ VA E  V F S SG       V   A  +  L  
Sbjct: 216 QAGAKGPGGVLMVGPPGTGKTLLARAVAGEAEVPFLSVSGSGFVEMFVGVGASRVRDLFG 275

Query: 102 NLEDR--DVLFIDEI 114
               R   ++FIDEI
Sbjct: 276 EARKRAPSIIFIDEI 290


>gi|290474662|ref|YP_003467542.1| ATPase, chaperone subunit of serine protease [Xenorhabdus bovienii
           SS-2004]
 gi|289173975|emb|CBJ80762.1| ATPase, chaperone subunit of serine protease [Xenorhabdus bovienii
           SS-2004]
          Length = 423

 Score = 39.7 bits (91), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LA+ +AR L V F       + +AG +   + N+            
Sbjct: 114 NILLIGPTGSGKTLLAETLARYLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 173

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 174 QKAQRGIVYIDEIDKIS 190


>gi|254573528|ref|XP_002493873.1| ATP-dependent Lon protease, involved in degradation of misfolded
           proteins in mitochondria [Pichia pastoris GS115]
 gi|238033672|emb|CAY71694.1| ATP-dependent Lon protease, involved in degradation of misfolded
           proteins in mitochondria [Pichia pastoris GS115]
 gi|328354306|emb|CCA40703.1| Lon-like ATP-dependent protease [Pichia pastoris CBS 7435]
          Length = 1106

 Score = 39.7 bits (91), Expect = 0.73,   Method: Composition-based stats.
 Identities = 39/167 (23%), Positives = 70/167 (41%), Gaps = 39/167 (23%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF------------------RSTSGPVIAKAGDLAA 98
           + FVGPPG+GKT++ + +AR L   F                  R+  G +  +   + A
Sbjct: 587 ICFVGPPGVGKTSIGKSIARALNRKFYRFSVGGLSDVSEIKGHRRTYVGAIPGRV--VQA 644

Query: 99  LLTNLEDRDVLFIDEIHRL-----------SIIVEEILYPAMEDFQLDLMVGEGPSARSV 147
           L     +  ++ IDEI ++           S  + E+L P   +  LD       +   V
Sbjct: 645 LKKTETENPLILIDEIDKISHTHSVNGGDPSSALLELLDPEQNNSFLD-------NYMDV 697

Query: 148 KINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
            I+LS+   +    ++  +  PL DR  + I ++ Y  ++   I +R
Sbjct: 698 PIDLSKVLFVCTANQLNTIPGPLLDRMEV-IEISGYIADEKIKIAER 743


>gi|269128878|ref|YP_003302248.1| hypothetical protein Tcur_4689 [Thermomonospora curvata DSM 43183]
 gi|268313836|gb|ACZ00211.1| conserved hypothetical protein [Thermomonospora curvata DSM 43183]
          Length = 1685

 Score = 39.7 bits (91), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 26/44 (59%)

Query: 50   RAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA 93
            R + +  +L + PPG GKTTL + VA  LG+ F   +GP +  +
Sbjct: 1305 RTDQMGLLLLISPPGYGKTTLMEYVASRLGLMFVKVNGPALGHS 1348


>gi|224825920|ref|ZP_03699024.1| ATP-dependent protease La [Lutiella nitroferrum 2002]
 gi|224602144|gb|EEG08323.1| ATP-dependent protease La [Lutiella nitroferrum 2002]
          Length = 809

 Score = 39.7 bits (91), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 55/229 (24%), Positives = 91/229 (39%), Gaps = 51/229 (22%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD--------LAALLTNL----- 103
           + F GPPG+GKT+L Q +AR  G  F+  +   +    +        + AL  N+     
Sbjct: 383 LCFSGPPGVGKTSLGQSIARATGRAFQRVALGGLHDEAEIRGHRRTYIGALPGNIIQALR 442

Query: 104 ---EDRDVLFIDEIHRLSI---------IVEEILYPAMEDFQLDLMVGEGPSARSVKINL 151
                  VL +DEI +L            + E+L P       D  +G       V  +L
Sbjct: 443 RAGTTHTVLMLDEIDKLGAGGFHGDPGSALLEVLDPEQNRTFRDNYLG-------VDFDL 495

Query: 152 SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL-----KTIVQRGAKLTGLAVTDE 206
           SR   +     +  +  PL+DR  I I+L  Y  E+      + +V+R  +  GL     
Sbjct: 496 SRVMFVCTANVLDTIPGPLRDRMEI-IQLPGYTEEEKIEIARRYLVRRQLEANGLTTEQA 554

Query: 207 AACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255
              + A+ +             VRD+   A  + + RE+  + L R+A+
Sbjct: 555 GLTDAALTA------------IVRDYTREAGVRNLERELG-SVLRRVAM 590


>gi|221487011|gb|EEE25257.1| cell division protein, putative [Toxoplasma gondii GT1]
          Length = 978

 Score = 39.7 bits (91), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV +   SG
Sbjct: 115 VLLVGPPGTGKTALARAVATEAGVPYFYASG 145


>gi|197124755|ref|YP_002136706.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter sp. K]
 gi|196174604|gb|ACG75577.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter sp. K]
          Length = 618

 Score = 39.7 bits (91), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 38/69 (55%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           VL VGPPG GKT LA+ VA E  V F S SG    +   G  AA + +L ++       +
Sbjct: 197 VLLVGPPGTGKTLLAKAVAGEASVPFFSISGSEFVEMFVGVGAARVRDLFEQARAKAPAI 256

Query: 109 LFIDEIHRL 117
           +FIDE+  L
Sbjct: 257 IFIDELDAL 265


>gi|195122172|ref|XP_002005586.1| GI18990 [Drosophila mojavensis]
 gi|193910654|gb|EDW09521.1| GI18990 [Drosophila mojavensis]
          Length = 752

 Score = 39.7 bits (91), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL VGPPG GKT LA+ VA E  V F   +GP
Sbjct: 353 VLLVGPPGTGKTLLARAVAGEANVPFFHAAGP 384


>gi|170289459|ref|YP_001739697.1| ATPase [Thermotoga sp. RQ2]
 gi|170176962|gb|ACB10014.1| ATPase associated with various cellular activities AAA_3
           [Thermotoga sp. RQ2]
          Length = 305

 Score = 39.7 bits (91), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 69/158 (43%), Gaps = 28/158 (17%)

Query: 44  IEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL 103
           IE   A   A  HVL    PG+GKT LA+ +A  LGV+FR           DL  L   +
Sbjct: 20  IEVVVAALLAKGHVLMEDVPGVGKTMLARALALSLGVDFRRVQFTPDLLPTDLTGLY--I 77

Query: 104 EDR--------------DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKI 149
            DR              DVL  DEI+R +   +  L  AM + Q+ +   +G + R  + 
Sbjct: 78  YDRKKEDFVFKKGPVFTDVLLADEINRATPRTQSALLEAMAEGQVTV---DGITHRLSE- 133

Query: 150 NLSRFTLIAATTRVGLL-TNPLQ----DRFGIPIRLNF 182
              RF +IA    +    T PL     DRF I +++ +
Sbjct: 134 ---RFFVIATQNPIEYEGTFPLPEAQLDRFMICVKMGY 168


>gi|156341294|ref|XP_001620716.1| hypothetical protein NEMVEDRAFT_v1g62711 [Nematostella vectensis]
 gi|156205968|gb|EDO28616.1| predicted protein [Nematostella vectensis]
          Length = 172

 Score = 39.7 bits (91), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 12/81 (14%)

Query: 50  RAEALDHVLFVGPPGLGKTTLAQVVA---RELGVNFRST---------SGPVIAKAGDLA 97
           +A+   H++FVG PG GKTT+A+++A    E GV  R+           G  I + G   
Sbjct: 26  KAKETYHMMFVGNPGTGKTTMARMMAGILHEAGVIKRNKVIEVQRTALVGRYIGETGTKT 85

Query: 98  ALLTNLEDRDVLFIDEIHRLS 118
               +     VL IDE +RLS
Sbjct: 86  KGAIDRAKGSVLLIDEAYRLS 106


>gi|149376711|ref|ZP_01894469.1| ATP-dependent protease ATP-binding subunit [Marinobacter algicola
           DG893]
 gi|149358950|gb|EDM47416.1| ATP-dependent protease ATP-binding subunit [Marinobacter algicola
           DG893]
          Length = 427

 Score = 39.7 bits (91), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LA+ +AR L V F       + +AG +   + N+            
Sbjct: 117 NILLIGPTGSGKTLLAETLARMLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDV 176

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 177 DKAQRGIVYIDEIDKIS 193


>gi|124028340|ref|YP_001013660.1| putative MoxR ATPase [Hyperthermus butylicus DSM 5456]
 gi|123979034|gb|ABM81315.1| putative MoxR ATPase [Hyperthermus butylicus DSM 5456]
          Length = 315

 Score = 39.7 bits (91), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 79/185 (42%), Gaps = 25/185 (13%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRS 84
           R +EE +  V    N+   + AA A   A  HVL  G PG+ KT L++ VA    V F  
Sbjct: 17  RVVEEVSKAVVGKRNVVDLMVAAIA---AGGHVLLEGVPGVAKTLLSRAVASAFNVEFSR 73

Query: 85  TSGPVIAKAGDLAALLTNLEDR----------DVLFIDEIHRLSIIVEEILYPAMEDFQL 134
                     D+       + R          D++ +DEI+R S   +  L  AM++ Q+
Sbjct: 74  VQCTPDLLPSDIIGTFVYRDGRFEFVRGPIFADIVLVDEINRASPKTQSALLEAMQERQV 133

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRV---GL--LTNPLQDRFGIPIRLNFYEIEDLK 189
            +        ++ ++    FT+IA    V   G+  L+    DRF   I + +   E+L 
Sbjct: 134 TVW------GKTFRLP-DTFTVIATMNPVESEGVYPLSEAQVDRFLAKIPVGYPSREELV 186

Query: 190 TIVQR 194
            I++R
Sbjct: 187 EIMER 191


>gi|194364615|ref|YP_002027225.1| ATP-dependent protease ATP-binding subunit ClpX [Stenotrophomonas
           maltophilia R551-3]
 gi|238693450|sp|B4SLN2|CLPX_STRM5 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|194347419|gb|ACF50542.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Stenotrophomonas maltophilia R551-3]
          Length = 429

 Score = 39.7 bits (91), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------ED 105
           A  ++L VGP G GKT LA+ +AR L V F       + +AG +   + N+        D
Sbjct: 113 AKSNILLVGPTGSGKTLLAETLARLLNVPFTMADATTLTEAGYVGEDVENIIQKLLQKCD 172

Query: 106 RDV-------LFIDEIHRLS 118
            DV       ++IDEI ++S
Sbjct: 173 YDVEKAQQGIVYIDEIDKIS 192


>gi|109947137|ref|YP_664365.1| cell division protein FtsH3 [Helicobacter acinonychis str. Sheeba]
 gi|109714358|emb|CAJ99366.1| cell division protein FtsH3 [Helicobacter acinonychis str. Sheeba]
          Length = 550

 Score = 39.7 bits (91), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDR--DV 108
           VL +GPPG+GKT +A+ +A E  V F   SG   ++      A  +  L  + +     +
Sbjct: 198 VLLIGPPGVGKTMIAKALASEAKVPFFYESGSAFSQIYVGAGAKKVHELFMHAKKHAPSI 257

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 258 IFIDEIDAL 266


>gi|147679221|ref|YP_001213436.1| ATP-dependent protease [Pelotomaculum thermopropionicum SI]
 gi|146275318|dbj|BAF61067.1| predicted ATP-dependent protease [Pelotomaculum thermopropionicum
           SI]
          Length = 646

 Score = 39.7 bits (91), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 78/214 (36%), Gaps = 56/214 (26%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           E L  R +S   + +  LRP + +E  GQ  A   L      AK  +    H++  GPPG
Sbjct: 157 EKLEQRKLST--SALEFLRPASFDEIVGQERAVKAL-----LAKLASPYPQHIILYGPPG 209

Query: 65  LGKTTLAQVVAREL----GVNFRSTSGPVIAKAGDL--------AALLTNLED------- 105
           +GKTT A++   E     G  F   +  V      L          LL ++ D       
Sbjct: 210 VGKTTAARLALEEAKRAGGTPFSKEAAFVEVNGATLRWDPREVTNPLLGSVHDPIYQGAR 269

Query: 106 RD--------------------VLFIDEIHRLSIIVEEILYPAMED----FQLDLMVGEG 141
           RD                    VLFIDEI  +  I++  L   +ED    F+        
Sbjct: 270 RDLAESGVPEPKLGLVTEAHGGVLFIDEIGEMDPILQNKLLKVLEDKRVFFESSYYDPSD 329

Query: 142 PSARSVKINL------SRFTLIAATTRVGLLTNP 169
           P+       L      + F LI ATTR     NP
Sbjct: 330 PNIPQYIKKLFEEGAPADFILIGATTREPEEINP 363


>gi|94990691|ref|YP_598791.1| DNA polymerase III subunits gamma and tau [Streptococcus pyogenes
           MGAS10270]
 gi|94544199|gb|ABF34247.1| DNA polymerase III subunit gamma/tau [Streptococcus pyogenes
           MGAS10270]
          Length = 556

 Score = 39.7 bits (91), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 8/91 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           R +T +E  GQ    + LK  +E+ K     + H  LF GP G GKT+ A++ A+ +   
Sbjct: 10  RSQTFDEMVGQSVISTTLKQAVESGK-----ISHAYLFSGPRGTGKTSAAKIFAKAMNCP 64

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID 112
            +    P      D+   +TN    DV+ ID
Sbjct: 65  NQVDGEP--CNQCDICRDITNGSLEDVIEID 93


>gi|71280636|ref|YP_268526.1| ATP-dependent M41 family peptidase [Colwellia psychrerythraea 34H]
 gi|71146376|gb|AAZ26849.1| ATP-dependent peptidase, M41 family [Colwellia psychrerythraea 34H]
          Length = 1301

 Score = 39.7 bits (91), Expect = 0.73,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 8/69 (11%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGP-----VIAKAGDLAALLTNLEDR---DVL 109
           LF GPPG GKT LA+ VA E G+ F S S       +I  + +    L ++  +    ++
Sbjct: 905 LFAGPPGTGKTFLAKAVAGECGLPFFSVSASELSSTIIGGSSEKIMALFSVARKYAPSIV 964

Query: 110 FIDEIHRLS 118
           FIDEI  ++
Sbjct: 965 FIDEIDAIA 973


>gi|41406420|ref|NP_959256.1| DNA polymerase III subunits gamma and tau [Mycobacterium avium
          subsp. paratuberculosis K-10]
 gi|41394769|gb|AAS02639.1| DnaZX [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 612

 Score = 39.7 bits (91), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 6/68 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
          RP T  E  GQ      L + +EA +     ++H  LF GP G GKT+ A+++AR L   
Sbjct: 8  RPATFAEVVGQEHVTEPLSIALEAGR-----INHAYLFSGPRGCGKTSSARILARSLNCV 62

Query: 82 FRSTSGPV 89
             T+ P 
Sbjct: 63 QGPTATPC 70


>gi|33519712|ref|NP_878544.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus
           Blochmannia floridanus]
 gi|46576472|sp|Q7VRH0|CLPX_BLOFL RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|33504057|emb|CAD83318.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Candidatus
           Blochmannia floridanus]
          Length = 426

 Score = 39.7 bits (91), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 20/101 (19%)

Query: 38  SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG--- 94
           SNL   +E +K+      ++L +GP G GKT LAQ +AR L + F  +    + +AG   
Sbjct: 112 SNLYQDVELSKS------NILLIGPTGSGKTLLAQTLARFLDIPFSISDATTLTEAGYVG 165

Query: 95  -DLAALLTNLEDR----------DVLFIDEIHRLSIIVEEI 124
            D+  ++  L  R           +++IDEI +++   E I
Sbjct: 166 EDVENVIQKLLQRCDYNIDRAQSGIIYIDEIDKIAKKSENI 206


>gi|99081367|ref|YP_613521.1| ATP-dependent protease ATP-binding subunit ClpX [Ruegeria sp.
           TM1040]
 gi|123077615|sp|Q1GGF7|CLPX_SILST RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|99037647|gb|ABF64259.1| ATP-dependent Clp protease; ATP-binding subunit ClpX [Ruegeria sp.
           TM1040]
          Length = 421

 Score = 39.7 bits (91), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+            
Sbjct: 114 NILLIGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNV 173

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDE+ +++
Sbjct: 174 ERAQRGIVYIDEVDKIT 190


>gi|329666678|gb|AEB92626.1| cell division protein FtsH-like protein [Lactobacillus johnsonii
           DPC 6026]
          Length = 708

 Score = 39.7 bits (91), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 228 VLLEGPPGTGKTLLARAVAGEAGVPFYSISG 258


>gi|328774431|gb|EGF84468.1| hypothetical protein BATDEDRAFT_85172 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 747

 Score = 39.7 bits (91), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 22/108 (20%)

Query: 3   DREGLLSRNVSQEDA--DISLLRPRTLEEFT------------GQVEACSNLKVFIEAAK 48
           D   LL   ++ ED    +S+++P  + E T            GQ +    L+  +E   
Sbjct: 444 DEMHLLDLQITLEDMRLGMSMVQPSAMREVTLEVPKVKWTDIGGQEDVKQRLREAVEWPL 503

Query: 49  ARAEAL--------DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
              EA           +L  GPPG  KT +A+ +A E G+NF +  GP
Sbjct: 504 KHPEAFLKFNISPPKGILLYGPPGCSKTLMAKALATEAGLNFLAVKGP 551



 Score = 35.8 bits (81), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 64/151 (42%), Gaps = 26/151 (17%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALL------TNLEDRDV 108
           +L  GPPG GKT LA+ VA E   +  + +G  I     G+    L       N +   +
Sbjct: 237 ILLFGPPGTGKTLLARAVAYETSAHVITVNGSEIMSRFHGEAETRLHHIFQEANEKSPSI 296

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQ------LDLMVGEGPSARSVKINLSRFTLIAATTR 162
           +F+DEI  L    +E    A E  Q      L LM G   +  S      R  +I AT R
Sbjct: 297 IFLDEIDALCPKRDE---GATEVHQRIVAALLTLMDGIN-TYSSKTTQHHRLVVIGATNR 352

Query: 163 VGLLTNPLQ--DRF------GIPIRLNFYEI 185
              + + L+   RF      GIP  ++ +EI
Sbjct: 353 PNAIDDALRRPGRFDHEIEIGIPSEIHRFEI 383


>gi|327183368|gb|AEA31815.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus
           amylovorus GRL 1118]
          Length = 423

 Score = 39.7 bits (91), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 14/83 (16%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD--------LAALLTNLE--- 104
           ++  +GP G GKT LAQ +AR L V F       + +AG         L  LL N +   
Sbjct: 111 NIAMIGPTGSGKTYLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDI 170

Query: 105 ---DRDVLFIDEIHRLSIIVEEI 124
               R +++IDEI ++S   E +
Sbjct: 171 ERAQRGIIYIDEIDKISKKSENV 193


>gi|323453628|gb|EGB09499.1| hypothetical protein AURANDRAFT_24084 [Aureococcus anophagefferens]
          Length = 282

 Score = 39.7 bits (91), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL------EDRDV 108
           VL  GPPG GKT LA+  A   G  F + S   +A    G+   L+  L      EDR V
Sbjct: 40  VLLFGPPGTGKTLLAKAAAGVEGATFFNVSAATLASKHRGESEKLVRALFARARGEDRGV 99

Query: 109 LFIDEIHRL 117
           +F DE+  L
Sbjct: 100 VFFDEVDAL 108


>gi|323486773|ref|ZP_08092092.1| hypothetical protein HMPREF9474_03843 [Clostridium symbiosum
           WAL-14163]
 gi|323399912|gb|EGA92291.1| hypothetical protein HMPREF9474_03843 [Clostridium symbiosum
           WAL-14163]
          Length = 687

 Score = 39.7 bits (91), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 14/94 (14%)

Query: 34  VEACSNLK----VFIEAAKARAEALD---HVLFVGPPGLGKTTLAQVVARELGVN-FRST 85
           +EACS +K    ++ +   ++  A      ++F GPPG GKT  AQV+A ELG+  F+  
Sbjct: 431 MEACSQVKHRYQIYEKWGFSQKMAYGTGTSIVFSGPPGTGKTMAAQVMAGELGLELFKVD 490

Query: 86  SGPVIAKA-GDLAALLTNL-----EDRDVLFIDE 113
              V++K  G+    L  +       + VLF DE
Sbjct: 491 LSSVVSKYIGETEKNLNQIFEEGRRSQAVLFFDE 524


>gi|322411594|gb|EFY02502.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           dysgalactiae subsp. dysgalactiae ATCC 27957]
          Length = 409

 Score = 39.7 bits (91), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +A+ L V F       + +AG    D+  +L  L        
Sbjct: 113 NILMIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYNV 172

Query: 104 --EDRDVLFIDEIHRLS 118
              +R ++++DEI +++
Sbjct: 173 ERAERGIIYVDEIDKIA 189


>gi|312898242|ref|ZP_07757633.1| ATP-dependent metalloprotease [Megasphaera micronuciformis F0359]
 gi|310620739|gb|EFQ04308.1| ATP-dependent metalloprotease [Megasphaera micronuciformis F0359]
          Length = 649

 Score = 39.7 bits (91), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 177 VLLFGPPGTGKTLLARAVAGEAGVPFFSISG 207


>gi|302392147|ref|YP_003827967.1| ATPase AAA [Acetohalobium arabaticum DSM 5501]
 gi|302204224|gb|ADL12902.1| AAA ATPase central domain protein [Acetohalobium arabaticum DSM
           5501]
          Length = 339

 Score = 39.7 bits (91), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 76/194 (39%), Gaps = 33/194 (17%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           ED  +S    R +     +    + L+ +   AK R      +LF GPPG GKT  AQ +
Sbjct: 95  EDVVLSNENKRVINRIMAEYYGANQLRGYNLNAKRR------ILFCGPPGCGKTMTAQSL 148

Query: 75  ARELGVN--FRSTSGPVIAKAGDLAALLTNL-----EDRDVLFIDEIHRLSIIVEEILYP 127
           A E+ +   +      + +  GD A+ L  +     + R V+F DE   +          
Sbjct: 149 ANEINLPLLYIHMDSLISSYLGDTASNLRKIFQYAEQGRWVIFFDEFDTIGK-------- 200

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFT-------LIAATTRVGLLTNPLQDRFGIPIRL 180
                  D     G   R+V   L           LIAAT    LL N +  RF   +  
Sbjct: 201 -----SRDDENEHGELKRAVNTFLQMLDNFKTETLLIAATNHQHLLDNAIWRRFDEIVYF 255

Query: 181 NFYEIEDLKTIVQR 194
           +  +IE ++ ++++
Sbjct: 256 DKPDIEQIQKLLKK 269


>gi|282162727|ref|YP_003355112.1| cell division control protein 48 [Methanocella paludicola SANAE]
 gi|282155041|dbj|BAI60129.1| cell division control protein 48 [Methanocella paludicola SANAE]
          Length = 760

 Score = 39.7 bits (91), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL +GPPG GKT LA+ VA E    F S +GP I
Sbjct: 249 VLILGPPGTGKTLLAKAVANESDAYFTSINGPEI 282



 Score = 37.7 bits (86), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 24/45 (53%), Gaps = 6/45 (13%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDL 96
           EA   VL  GPPG GKT LA+ +A E   NF      + AK  DL
Sbjct: 517 EAPKGVLLYGPPGTGKTLLAKAIANESQANF------ITAKGSDL 555


>gi|227888867|ref|ZP_04006672.1| M41 family endopeptidase FtsH [Lactobacillus johnsonii ATCC 33200]
 gi|227850704|gb|EEJ60790.1| M41 family endopeptidase FtsH [Lactobacillus johnsonii ATCC 33200]
          Length = 708

 Score = 39.7 bits (91), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 228 VLLEGPPGTGKTLLARAVAGEAGVPFYSISG 258


>gi|221488766|gb|EEE26980.1| ATPase, AAA family protein [Toxoplasma gondii GT1]
          Length = 1326

 Score = 39.7 bits (91), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 8/69 (11%)

Query: 57   VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDR------DV 108
            +L  GPPG GKT LA+ +A     NF +  GP +++K  GD  A L  L  R       +
Sbjct: 982  ILLYGPPGCGKTFLAKALANACQANFIAVKGPELLSKYVGDSEAALRRLFSRASFFSPSL 1041

Query: 109  LFIDEIHRL 117
            +F DEI  L
Sbjct: 1042 IFFDEIDAL 1050


>gi|45200823|ref|NP_986393.1| AGL274Wp [Ashbya gossypii ATCC 10895]
 gi|44985521|gb|AAS54217.1| AGL274Wp [Ashbya gossypii ATCC 10895]
          Length = 732

 Score = 39.7 bits (91), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 44/85 (51%), Gaps = 10/85 (11%)

Query: 13  SQEDADISLLRPRT---LEEFTGQVEACSNLKVFIEAAK--ARAEAL-----DHVLFVGP 62
           S E AD S+   +T    E+  G  EA + L+  ++  K  A+ E+L       VL  GP
Sbjct: 248 SAETADKSVDVAKTNVKFEDVRGCDEARAELEEIVDFLKDPAKYESLGGNLPKGVLLTGP 307

Query: 63  PGLGKTTLAQVVARELGVNFRSTSG 87
           PG GKT LA+  A E GV+F   SG
Sbjct: 308 PGTGKTLLARATAGEAGVDFFFMSG 332


>gi|81429209|ref|YP_396210.1| ATP-dependent zinc metalloendopeptidase FtsH (cell division protein
           FtsH) [Lactobacillus sakei subsp. sakei 23K]
 gi|78610852|emb|CAI55904.1| ATP-dependent zinc metalloendopeptidase FtsH (cell division protein
           FtsH) [Lactobacillus sakei subsp. sakei 23K]
          Length = 696

 Score = 39.7 bits (91), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           VL  GPPG GKT LA+ VA E GV F S SG    +   G  A+ + +L ++       +
Sbjct: 226 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKSAPSI 285

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 286 IFIDEI 291


>gi|30248063|ref|NP_840133.1| ATP-dependent protease ATP-binding subunit [Nitrosomonas europaea
           ATCC 19718]
 gi|46576514|sp|Q82Y56|CLPX_NITEU RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|30179948|emb|CAD83943.1| clpX; ATP-dependent protease (ATP-binding specificity subunit)
           [Nitrosomonas europaea ATCC 19718]
          Length = 426

 Score = 39.7 bits (91), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+            
Sbjct: 116 NILLIGPTGSGKTLLAQTLARLLDVPFVIADATTLTEAGYVGEDVENIIQKLLQKCNHDV 175

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 176 EKAQRGIVYIDEIDKIS 192


>gi|71018963|ref|XP_759712.1| hypothetical protein UM03565.1 [Ustilago maydis 521]
 gi|46099223|gb|EAK84456.1| hypothetical protein UM03565.1 [Ustilago maydis 521]
          Length = 861

 Score = 39.7 bits (91), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL------EDRDV 108
           VL  GPPG GKT+LA+ VA   G ++ + +GP ++ A  G+  + L ++      +   +
Sbjct: 288 VLLYGPPGTGKTSLARAVATATGSSYITINGPELSSAFHGETESKLRSIFKEARRKSPCI 347

Query: 109 LFIDEIHRLS 118
           + IDEI  L+
Sbjct: 348 IIIDEIDALA 357



 Score = 37.7 bits (86), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 16/32 (50%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG  KT +A+ +A E G+NF +  GP
Sbjct: 633 VLLYGPPGCSKTLIARALATESGLNFLAVKGP 664


>gi|325117783|emb|CBZ53334.1| putative ATPase, AAA family domain-containing protein [Neospora
            caninum Liverpool]
          Length = 1221

 Score = 39.3 bits (90), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 8/69 (11%)

Query: 57   VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDR------DV 108
            +L  GPPG GKT LA+ +A     NF +  GP +++K  GD  A L  L  R       +
Sbjct: 1002 ILLYGPPGCGKTFLAKALANACQANFIAVKGPELLSKYVGDSEAALRRLFSRASFFSPSL 1061

Query: 109  LFIDEIHRL 117
            +F DEI  L
Sbjct: 1062 IFFDEIDAL 1070


>gi|312959183|ref|ZP_07773702.1| ATP-dependent Lon protease [Pseudomonas fluorescens WH6]
 gi|311286953|gb|EFQ65515.1| ATP-dependent Lon protease [Pseudomonas fluorescens WH6]
          Length = 806

 Score = 39.3 bits (90), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 72/166 (43%), Gaps = 40/166 (24%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           VL VGPPG+GKT++ + +A  LG  F R + G +  +A              G L   L 
Sbjct: 388 VLLVGPPGVGKTSVGKSIAESLGRPFYRFSVGGMRDEAEIKGHRRTYIGALPGKLVQALK 447

Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAME----DFQLDLMVGEGPSARSVK 148
           ++E  + V+ +DEI ++    +        E L P       D  LDL           +
Sbjct: 448 DVEVMNPVIMLDEIDKMGQSFQGDPASALLETLDPEQNVEFLDHYLDL-----------R 496

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           ++LS+   +     +  +  PL DR  + IRL+ Y  E+   I +R
Sbjct: 497 LDLSKVLFVCTANTLDSIPGPLLDRMEV-IRLSGYITEEKVAIAKR 541


>gi|290969193|ref|ZP_06560718.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Megasphaera
           genomosp. type_1 str. 28L]
 gi|290780699|gb|EFD93302.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Megasphaera
           genomosp. type_1 str. 28L]
          Length = 410

 Score = 39.3 bits (90), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           +V+ VGP G GKT LAQ +AR L V F       + +AG    D+   L  L        
Sbjct: 109 NVVMVGPTGSGKTLLAQTLARLLNVPFAIADATSLTEAGYVGEDVENCLLKLIQAADYDI 168

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 169 EKAQRGIIYIDEIDKIS 185


>gi|281350895|gb|EFB26479.1| hypothetical protein PANDA_002733 [Ailuropoda melanoleuca]
          Length = 491

 Score = 39.3 bits (90), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL VGPPG GKT LA+ VA E G  F + S   +
Sbjct: 245 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTL 278


>gi|269928564|ref|YP_003320885.1| ATP-dependent metalloprotease FtsH [Sphaerobacter thermophilus DSM
           20745]
 gi|310943109|sp|D1C8C0|FTSH4_SPHTD RecName: Full=ATP-dependent zinc metalloprotease FtsH 4
 gi|269787921|gb|ACZ40063.1| ATP-dependent metalloprotease FtsH [Sphaerobacter thermophilus DSM
           20745]
          Length = 658

 Score = 39.3 bits (90), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           +L VGPPG GKT LA+ VA E GV F S S     +   G  A+ + +L +R       +
Sbjct: 239 ILLVGPPGTGKTLLARAVAGEAGVPFFSVSASEFVEMFVGVGASRVRDLFERAKASAPSI 298

Query: 109 LFIDEI 114
           +F+DE+
Sbjct: 299 MFVDEL 304


>gi|268318838|ref|YP_003292494.1| ATP-dependent metalloprotease FtsH [Lactobacillus johnsonii FI9785]
 gi|262397213|emb|CAX66227.1| ATP-dependent metalloprotease FtsH [Lactobacillus johnsonii FI9785]
          Length = 708

 Score = 39.3 bits (90), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 228 VLLEGPPGTGKTLLARAVAGEAGVPFYSISG 258


>gi|260654670|ref|ZP_05860160.1| negative regulator of genetic competence ClpC/MecB [Jonquetella
           anthropi E3_33 E1]
 gi|260630686|gb|EEX48880.1| negative regulator of genetic competence ClpC/MecB [Jonquetella
           anthropi E3_33 E1]
          Length = 826

 Score = 39.3 bits (90), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 5/73 (6%)

Query: 11  NVSQEDADISL-LRPRTLEEFTGQVEA----CSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            +SQ +A+  L L  R  +   GQ EA    C  L+      +     +   LF+GP G+
Sbjct: 497 QMSQSEAERLLTLESRVEKHLIGQSEAVSCVCRALRRNRSGLQDEKRPIGSFLFLGPSGV 556

Query: 66  GKTTLAQVVAREL 78
           GKT LA+VVAREL
Sbjct: 557 GKTELARVVAREL 569


>gi|229588611|ref|YP_002870730.1| ATP-dependent protease [Pseudomonas fluorescens SBW25]
 gi|229360477|emb|CAY47334.1| ATP-dependent protease [Pseudomonas fluorescens SBW25]
          Length = 806

 Score = 39.3 bits (90), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 72/166 (43%), Gaps = 40/166 (24%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           VL VGPPG+GKT++ + +A  LG  F R + G +  +A              G L   L 
Sbjct: 388 VLLVGPPGVGKTSVGKSIAESLGRPFYRFSVGGMRDEAEIKGHRRTYIGALPGKLVQALK 447

Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAME----DFQLDLMVGEGPSARSVK 148
           ++E  + V+ +DEI ++    +        E L P       D  LDL           +
Sbjct: 448 DVEVMNPVIMLDEIDKMGQSFQGDPASALLETLDPEQNVEFLDHYLDL-----------R 496

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           ++LS+   +     +  +  PL DR  + IRL+ Y  E+   I +R
Sbjct: 497 LDLSKVLFVCTANTLDSIPGPLLDRMEV-IRLSGYITEEKVAIAKR 541


>gi|323340666|ref|ZP_08080918.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus
           ruminis ATCC 25644]
 gi|323091789|gb|EFZ34409.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus
           ruminis ATCC 25644]
          Length = 410

 Score = 39.3 bits (90), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 53/121 (43%), Gaps = 27/121 (22%)

Query: 25  RTLEEFT-GQVEACSNLKVFIEAAKARAEAL------------DHVLFVGPPGLGKTTLA 71
           +TL ++  GQ EA   L V +     R  A+             ++  +GP G GKT LA
Sbjct: 69  KTLNQYVIGQNEAKKTLAVAVYNHYKRINAMLEDENEDTELQKSNICLIGPTGSGKTYLA 128

Query: 72  QVVARELGVNFRSTSGPVIAKAGD--------LAALLTNLE------DRDVLFIDEIHRL 117
           Q +A+ L V F       + +AG         L  LL N +       R +++IDEI ++
Sbjct: 129 QSLAKLLNVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDVERAQRGIIYIDEIDKI 188

Query: 118 S 118
           +
Sbjct: 189 A 189


>gi|255593034|ref|XP_002535776.1| conserved hypothetical protein [Ricinus communis]
 gi|223521997|gb|EEF26607.1| conserved hypothetical protein [Ricinus communis]
          Length = 297

 Score = 39.3 bits (90), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 82/193 (42%), Gaps = 36/193 (18%)

Query: 11  NVSQEDADISLLRPRTL--EEFTGQVEACSNLKVFIEAAKARAEALDHVLFV-GPPGLGK 67
           N S E+ D+  LR + +  E+  G  +    +  FI   K R  +   ++ + GPPG+GK
Sbjct: 63  NYSDENFDV--LRAQKILDEDHYGLTDVKERILEFIAVGKLRGTSQGKIICLSGPPGVGK 120

Query: 68  TTLAQVVARELGVN-FRSTSGP--------------VIAKAGDLAALLTNLEDRD-VLFI 111
           T++ + +AR L    FR + G               + A  G +   L N+   + ++ I
Sbjct: 121 TSIGRSIARALNRKFFRFSVGGLSDVAEIKGHRRTYIGAMPGKMVQCLKNVGTANPLVLI 180

Query: 112 DEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
           DEI +L        +  + E+L P      LD  +        V I+LS+   +     V
Sbjct: 181 DEIDKLGRGHAGDPASALLELLDPEQNANFLDHYL-------DVPIDLSKVLFVCTANVV 233

Query: 164 GLLTNPLQDRFGI 176
            ++  PL DR  +
Sbjct: 234 DMIPGPLLDRMEV 246


>gi|218132155|ref|ZP_03460959.1| hypothetical protein BACPEC_00012 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992949|gb|EEC58947.1| hypothetical protein BACPEC_00012 [Bacteroides pectinophilus ATCC
           43243]
          Length = 216

 Score = 39.3 bits (90), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E  V F S SG       V   A  +  L    +++   +
Sbjct: 92  VLLVGPPGTGKTMLAKAVAGESNVPFFSMSGSEFVEMFVGMGASKVRDLFGQAKEKAPCI 151

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 152 VFIDEI 157


>gi|237831685|ref|XP_002365140.1| cell division protein, putative [Toxoplasma gondii ME49]
 gi|211962804|gb|EEA97999.1| cell division protein, putative [Toxoplasma gondii ME49]
 gi|221506694|gb|EEE32311.1| cell division protein, putative [Toxoplasma gondii VEG]
          Length = 978

 Score = 39.3 bits (90), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV +   SG
Sbjct: 115 VLLVGPPGTGKTALARAVATEAGVPYFYASG 145


>gi|190573023|ref|YP_001970868.1| ATP-dependent protease ATP-binding subunit ClpX [Stenotrophomonas
           maltophilia K279a]
 gi|254524793|ref|ZP_05136848.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Stenotrophomonas sp. SKA14]
 gi|229485949|sp|B2FQR3|CLPX_STRMK RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|190010945|emb|CAQ44554.1| ATP-dependent clp protease ATP-binding subunit ClpX
           [Stenotrophomonas maltophilia K279a]
 gi|219722384|gb|EED40909.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Stenotrophomonas sp. SKA14]
          Length = 429

 Score = 39.3 bits (90), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------ED 105
           A  ++L VGP G GKT LA+ +AR L V F       + +AG +   + N+        D
Sbjct: 113 AKSNILLVGPTGSGKTLLAETLARLLNVPFTMADATTLTEAGYVGEDVENIIQKLLQKCD 172

Query: 106 RDV-------LFIDEIHRLS 118
            DV       ++IDEI ++S
Sbjct: 173 YDVEKAQQGIVYIDEIDKIS 192


>gi|171778305|ref|ZP_02919511.1| hypothetical protein STRINF_00353 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171283005|gb|EDT48429.1| hypothetical protein STRINF_00353 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 409

 Score = 39.3 bits (90), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +A+ L V F       + +AG    D+  +L  L        
Sbjct: 113 NILLIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADFNI 172

Query: 104 --EDRDVLFIDEIHRLS 118
              +R ++++DEI +++
Sbjct: 173 ERAERGIIYVDEIDKIA 189


>gi|149177956|ref|ZP_01856553.1| ATP-dependent protease ATP-binding subunit [Planctomyces maris DSM
           8797]
 gi|148843149|gb|EDL57515.1| ATP-dependent protease ATP-binding subunit [Planctomyces maris DSM
           8797]
          Length = 428

 Score = 39.3 bits (90), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 59/141 (41%), Gaps = 31/141 (21%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LA+ +AR L V F       + +AG +   + NL            
Sbjct: 124 NILLIGPTGSGKTLLAKSLARYLQVPFAIGDATTLTEAGYVGEDVENLLLKLLHAADFDV 183

Query: 104 --EDRDVLFIDEIHRLS------IIVEEILYPAMEDFQLDLMVG-----------EGPSA 144
               R +LFIDEI ++        I  ++    ++   L ++ G           + P  
Sbjct: 184 EAAQRGILFIDEIDKIGKTSQNVSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPEQ 243

Query: 145 RSVKINLSRFTLIAATTRVGL 165
           + ++++ S    I   T VGL
Sbjct: 244 QYIQLDTSNILFICGGTFVGL 264


>gi|149003196|ref|ZP_01828092.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae SP14-BS69]
 gi|147758656|gb|EDK65653.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae SP14-BS69]
          Length = 251

 Score = 39.3 bits (90), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +A+ L V F       + +AG    D+  +L  L        
Sbjct: 114 NILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQVADFNI 173

Query: 104 --EDRDVLFIDEIHRLS 118
              +R ++++DEI +++
Sbjct: 174 ERAERGIIYVDEIDKIA 190


>gi|153824131|ref|ZP_01976798.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae B33]
 gi|126518350|gb|EAZ75573.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae B33]
          Length = 339

 Score = 39.3 bits (90), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LA+ +AR L V F       + +AG +   + N+            
Sbjct: 116 NILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 175

Query: 104 --EDRDVLFIDEIHRLS 118
              +R +++IDEI ++S
Sbjct: 176 AKAERGIVYIDEIDKIS 192


>gi|118383455|ref|XP_001024882.1| ATPase, AAA family protein [Tetrahymena thermophila]
 gi|89306649|gb|EAS04637.1| ATPase, AAA family protein [Tetrahymena thermophila SB210]
          Length = 476

 Score = 39.3 bits (90), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 85/205 (41%), Gaps = 22/205 (10%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           +D + L      + D + ++L      E   Q+ A + +K      KA       VLF G
Sbjct: 196 LDWDYLAGYEQQKRDIEDTVLLALQYPEIYDQITAATRMKQEPNRPKA-------VLFEG 248

Query: 62  PPGLGKTTLAQVVARELGVNF---------RSTSGPVIAKAGDLAALLTNLEDRDVLFID 112
           PPG GKTT A+++A+++ +               G    K  DL    T +  + ++FID
Sbjct: 249 PPGTGKTTSAKIIAQQVSIPLIYMPLESIMSKYYGEAEKKFADLWE-ATKMLGKSIIFID 307

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           EI  ++   +  ++ A     L  ++ +  S  S     S   L+ AT R   L   +  
Sbjct: 308 EIDAIAGTRDSEMHEASRRI-LSTLLRKIDSFESS----SDVLLVCATNRKQDLDPAMLS 362

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAK 197
           R  + I+    ++   + I +R AK
Sbjct: 363 RIDMSIKFEKPDVHSRQAIFKRYAK 387


>gi|19746336|ref|NP_607472.1| DNA polymerase III subunits gamma and tau [Streptococcus pyogenes
           MGAS8232]
 gi|19748530|gb|AAL97971.1| DNA polymerase III gamma/tau subunits [Streptococcus pyogenes
           MGAS8232]
          Length = 556

 Score = 39.3 bits (90), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 8/91 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           R +T +E  GQ    + LK  +E+ K     + H  LF GP G GKT+ A++ A+ +   
Sbjct: 10  RSQTFDEMVGQSVISTTLKQAVESGK-----ISHAYLFSGPRGTGKTSAAKIFAKAMNCP 64

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID 112
            +    P      D+   +TN    DV+ ID
Sbjct: 65  NQVDGEP--CNQCDICRDITNGSLEDVIEID 93


>gi|330817269|ref|YP_004360974.1| ATP-dependent protease La [Burkholderia gladioli BSR3]
 gi|327369662|gb|AEA61018.1| ATP-dependent protease La [Burkholderia gladioli BSR3]
          Length = 805

 Score = 39.3 bits (90), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 105/256 (41%), Gaps = 56/256 (21%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           +  VGPPG+GKT+L Q +AR     F R   G V  +A              G +   LT
Sbjct: 354 LCLVGPPGVGKTSLGQSIARATNRKFVRMALGGVRDEAEIRGHRRTYIGSMPGKILQSLT 413

Query: 102 NLEDRDVLF-IDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152
            +  R+ LF +DE+ ++        S  + E+L P       D  V        V  +LS
Sbjct: 414 KVGVRNPLFLLDEVDKMGMDFRGDPSSALLEVLDPEQNHTFADHYV-------EVDFDLS 466

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR----------GAKLTGLA 202
               +A +  +  +  PL DR  + IRL+ Y  ++  +I QR          G K   + 
Sbjct: 467 DVMFVATSNSLN-IPPPLLDRMEV-IRLSGYTEDEKVSIAQRYLLPKQKKNNGLKDGEID 524

Query: 203 VTDEAACEIAMRSRGTPRIAG-RLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
           VT+EA  +I    R   R AG R L R            I R++    LL+ A   +  D
Sbjct: 525 VTEEAIRDII---RYYTREAGVRSLER--------EVSKICRKVVKMLLLKKAASPVKVD 573

Query: 262 QLDL-RYLTMIARNFG 276
             +L  +L +   +FG
Sbjct: 574 AGNLDTFLGVRKYDFG 589


>gi|301059684|ref|ZP_07200592.1| putative ATP-dependent protease La [delta proteobacterium NaphS2]
 gi|300446250|gb|EFK10107.1| putative ATP-dependent protease La [delta proteobacterium NaphS2]
          Length = 1152

 Score = 39.3 bits (90), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 4/53 (7%)

Query: 38  SNLKVFIEAAKARAEALDHV----LFVGPPGLGKTTLAQVVARELGVNFRSTS 86
           +NL    + AK   E +       LFVGPPG+GKT+LA  +A  LG+ +   S
Sbjct: 433 ANLIWRYQHAKGTDETMHRCGSAFLFVGPPGVGKTSLAISIAENLGIPYHKVS 485


>gi|297527514|ref|YP_003669538.1| 26S proteasome subunit P45 family [Staphylothermus hellenicus DSM
           12710]
 gi|297256430|gb|ADI32639.1| 26S proteasome subunit P45 family [Staphylothermus hellenicus DSM
           12710]
          Length = 402

 Score = 39.3 bits (90), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 67/163 (41%), Gaps = 30/163 (18%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
           T E+  G  E    L+  +E      E  +         VL  GPPG GKT LA+ VA E
Sbjct: 131 TFEDIGGLKEQVRELREVVELPLKNPELFEEIGIEPPKGVLLYGPPGCGKTLLAKAVAHE 190

Query: 78  LGVNFRSTSGPVIAKA--GDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAM 129
            G  F S  G  + +   G+ A ++  +      +   ++FIDEI  ++    +I     
Sbjct: 191 SGATFISIVGSELVQKFIGEGARIVREVFQYARKKAPAIVFIDEIDAIAARRLDIGTSGE 250

Query: 130 EDFQLDLMV------GEGPSARSVKINLSRFTLIAATTRVGLL 166
            + Q  LM       G  P        L +  +IAAT R+ +L
Sbjct: 251 REVQRTLMQLLAEIDGFKP--------LDKVKIIAATNRIDIL 285


>gi|302545418|ref|ZP_07297760.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302463036|gb|EFL26129.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
           himastatinicus ATCC 53653]
          Length = 428

 Score = 39.3 bits (90), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 57/132 (43%), Gaps = 34/132 (25%)

Query: 21  LLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEALDH---------------VLFV 60
           L +PR + EF      GQ  A  +L V +     R +A ++               +L +
Sbjct: 61  LPKPREIYEFLEGYVVGQEAAKKSLSVAVYNHYKRVQAGENGSHSKDDGIELAKSNILLL 120

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDV----- 108
           GP G GKT LAQ +AR L V F       + +AG +   + N+        D DV     
Sbjct: 121 GPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKKAET 180

Query: 109 --LFIDEIHRLS 118
             ++IDEI +++
Sbjct: 181 GIIYIDEIDKVA 192


>gi|269123513|ref|YP_003306090.1| DNA polymerase III, subunits gamma and tau [Streptobacillus
          moniliformis DSM 12112]
 gi|268314839|gb|ACZ01213.1| DNA polymerase III, subunits gamma and tau [Streptobacillus
          moniliformis DSM 12112]
          Length = 455

 Score = 39.3 bits (90), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 6/68 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH-VLFVGPPGLGKTTLAQVVARELGVN 81
          RP+   E  GQ      +K  ++  K     L H  LF GP G+GKTT+A+++A+    N
Sbjct: 11 RPQNFSELYGQEHIVRAIKNSLDNDK-----LSHAYLFNGPRGVGKTTIARLIAKGANCN 65

Query: 82 FRSTSGPV 89
             TS P 
Sbjct: 66 SGITSNPC 73


>gi|303276735|ref|XP_003057661.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226460318|gb|EEH57612.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 917

 Score = 39.3 bits (90), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 91/216 (42%), Gaps = 44/216 (20%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTS-GPVIAKA--------------GDLAALLT 101
           + F GPPG+GKTTLA+ +A+ L   F+  S G V  +A              G L   L 
Sbjct: 428 LCFQGPPGVGKTTLARSIAKVLQRPFQRISLGGVRDEADVRGHRRTYIASMPGRLIQGLK 487

Query: 102 NLEDRD-VLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152
            +  RD V+ +DE+ ++        +  + E+L P       D  +G       V  +LS
Sbjct: 488 RVGVRDPVMLLDELDKMGSDSRGDPAAAMLEVLDPEQNHAFTDHYMG-------VPFDLS 540

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL----KTIVQRGAKLTGLAVTDEAA 208
           R T +A       +  PL+DR  +     + + E L    + +V +  +  GL     A 
Sbjct: 541 RITFLATANDPRTIPGPLRDRMEMITVPGYTDEEKLAIACRHVVPKVLEEHGLL---HAG 597

Query: 209 CEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            E   R   TPR     LR  RD  E+   ++ TRE
Sbjct: 598 REGNNRDANTPR-----LRIPRDAVELV-VRSYTRE 627


>gi|225551709|ref|ZP_03772653.1| cell division protein FtsH [Borrelia sp. SV1]
 gi|225371736|gb|EEH01162.1| cell division protein FtsH [Borrelia sp. SV1]
          Length = 639

 Score = 39.3 bits (90), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 7/69 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ E    L+  +E         K  A+    VL VG PG GKT LA+ VA E 
Sbjct: 170 TFKDVAGQEEVKQELREVVEFLKNPKKFEKIGAKIPKGVLLVGSPGTGKTLLAKAVAGEA 229

Query: 79  GVNFRSTSG 87
           GV+F   SG
Sbjct: 230 GVSFFHMSG 238


>gi|163743917|ref|ZP_02151287.1| ATP-dependent protease ATP-binding subunit [Phaeobacter
           gallaeciensis 2.10]
 gi|161382762|gb|EDQ07161.1| ATP-dependent protease ATP-binding subunit [Phaeobacter
           gallaeciensis 2.10]
          Length = 408

 Score = 39.3 bits (90), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+            
Sbjct: 114 NILLIGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNV 173

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDE+ +++
Sbjct: 174 ERAQRGIVYIDEVDKIT 190


>gi|161507349|ref|YP_001577303.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus
           helveticus DPC 4571]
 gi|172048267|sp|A8YUS4|CLPX_LACH4 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|160348338|gb|ABX27012.1| ATP-dependent protease [Lactobacillus helveticus DPC 4571]
          Length = 424

 Score = 39.3 bits (90), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 14/83 (16%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD--------LAALLTNLE--- 104
           ++  +GP G GKT LAQ +AR L V F       + +AG         L  LL N +   
Sbjct: 111 NIAMIGPTGSGKTYLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDL 170

Query: 105 ---DRDVLFIDEIHRLSIIVEEI 124
               R +++IDEI ++S   E +
Sbjct: 171 ERAQRGIIYIDEIDKISKKSENV 193


>gi|300798642|ref|NP_001179847.1| katanin p60 ATPase-containing subunit A-like 1 [Bos taurus]
 gi|297481109|ref|XP_002691858.1| PREDICTED: katanin p60 subunit A-like 1 [Bos taurus]
 gi|296481912|gb|DAA24027.1| katanin p60 subunit A-like 1 [Bos taurus]
          Length = 490

 Score = 39.3 bits (90), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL VGPPG GKT LA+ VA E G  F + S   +
Sbjct: 244 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTL 277


>gi|20090925|ref|NP_617000.1| IstB helper protein [Methanosarcina acetivorans C2A]
 gi|20091042|ref|NP_617117.1| IstB helper protein [Methanosarcina acetivorans C2A]
 gi|20091562|ref|NP_617637.1| IstB helper protein [Methanosarcina acetivorans C2A]
 gi|20092141|ref|NP_618216.1| IstB helper protein [Methanosarcina acetivorans C2A]
 gi|19916005|gb|AAM05480.1| IstB helper protein [Methanosarcina acetivorans C2A]
 gi|19916134|gb|AAM05597.1| IstB helper protein [Methanosarcina acetivorans C2A]
 gi|19916721|gb|AAM06117.1| IstB helper protein [Methanosarcina acetivorans C2A]
 gi|19917364|gb|AAM06696.1| IstB helper protein [Methanosarcina acetivorans C2A]
          Length = 257

 Score = 39.3 bits (90), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 13/103 (12%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAKAR-AEALDHVLFVGPPGLGKTTLA-----QVVARE 77
            +TL+EF  + ++  + KV  + A  R    +++V+F+GPPG+GK+ LA     +V    
Sbjct: 71  KKTLDEFDFEFQSSIDKKVIEDLATLRFVHNVENVVFLGPPGVGKSHLAIALGIEVAKAG 130

Query: 78  LGVNFRSTSGPVIAK------AGDLAALLTNLEDRDVLFIDEI 114
           + V F +T G +I K       G L   L       VL IDE+
Sbjct: 131 ISVYFTNT-GNLIEKLKIANREGMLEKKLKGFMKFKVLIIDEM 172


>gi|18976777|ref|NP_578134.1| methanol dehydrogenase regulatory protein [Pyrococcus furiosus DSM
           3638]
 gi|18892368|gb|AAL80529.1| methanol dehydrogenase regulatory protein [Pyrococcus furiosus DSM
           3638]
          Length = 310

 Score = 39.3 bits (90), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 74/166 (44%), Gaps = 38/166 (22%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKAGDLAALLTNLED--------- 105
           HVL  G PG+ KTT+A+  A+ LG+ F R    P +  A  L  +  +  D         
Sbjct: 38  HVLIEGLPGVAKTTIAKSFAQALGLKFSRIQLTPDLLPADILGTVYYDQVDGNWKIKKGP 97

Query: 106 --RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
              +V+  DEI+R     +  L  AM++ Q+ +   EG +      +L R  L+ AT   
Sbjct: 98  IFANVVLADEINRAQPKTQSALLEAMQERQVTI---EGKT-----FSLERPFLVIAT--- 146

Query: 164 GLLTNPLQ------------DRFGIPIRLNFYEIEDLKTIVQRGAK 197
               NPL+            DRF + I++ +  IE+   +++R  K
Sbjct: 147 ---RNPLEFEGVYNLPEAQIDRFLLEIKVGYPSIEEELEMLKRKDK 189


>gi|120554757|ref|YP_959108.1| ATP-dependent protease ATP-binding subunit ClpX [Marinobacter
           aquaeolei VT8]
 gi|166214783|sp|A1U1Q2|CLPX_MARAV RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|120324606|gb|ABM18921.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Marinobacter
           aquaeolei VT8]
          Length = 427

 Score = 39.3 bits (90), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LA+ +AR L V F       + +AG +   + N+            
Sbjct: 117 NILLIGPTGSGKTLLAETLARMLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDV 176

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 177 EKAQRGIVYIDEIDKIS 193


>gi|56807590|ref|ZP_00365500.1| COG2812: DNA polymerase III, gamma/tau subunits [Streptococcus
           pyogenes M49 591]
          Length = 334

 Score = 39.3 bits (90), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 8/91 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           R +T +E  GQ    + LK  +E+ K     + H  LF GP G GKT+ A++ A+ +   
Sbjct: 10  RSQTFDEMVGQSVISTTLKQAVESGK-----ISHAYLFSGPRGTGKTSAAKIFAKAMNCP 64

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID 112
            +    P      D+   +TN    DV+ ID
Sbjct: 65  NQVDGEP--CNQCDICRDITNGSLEDVIEID 93


>gi|46125453|ref|XP_387280.1| hypothetical protein FG07104.1 [Gibberella zeae PH-1]
          Length = 1209

 Score = 39.3 bits (90), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 34/70 (48%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           +L  G PG GKT LA  VA E G+NF S  GP I     G     + +L DR       V
Sbjct: 869 LLLYGYPGCGKTLLASAVAGECGLNFISVKGPEILNKYIGASEKSVRDLFDRASAAKPCV 928

Query: 109 LFIDEIHRLS 118
           LF DE   ++
Sbjct: 929 LFFDEFDSIA 938


>gi|328776099|ref|XP_393770.4| PREDICTED: paraplegin-like [Apis mellifera]
          Length = 725

 Score = 39.3 bits (90), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 8/65 (12%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK-AGDLAA-----LLTNLEDR--DVL 109
           L +GPPG GKT LA+ VA E  V F S +G    +  G L A     L T  + R   ++
Sbjct: 329 LLLGPPGCGKTLLAKAVATESNVPFLSMNGSEFTELIGGLGAARVRDLFTEAKKRAPSII 388

Query: 110 FIDEI 114
           +IDEI
Sbjct: 389 YIDEI 393


>gi|331699843|ref|YP_004336082.1| ATP-dependent metalloprotease FtsH [Pseudonocardia dioxanivorans
           CB1190]
 gi|326954532|gb|AEA28229.1| ATP-dependent metalloprotease FtsH [Pseudonocardia dioxanivorans
           CB1190]
          Length = 818

 Score = 39.3 bits (90), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 32/59 (54%), Gaps = 6/59 (10%)

Query: 34  VEACSNLKVFIEAAKARAEAL-----DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VE    +K F++    R +AL       VL  GPPG GKT LA+ VA E GV F + SG
Sbjct: 175 VEELYEIKDFLQN-PGRYQALGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYTISG 232


>gi|326501866|dbj|BAK06425.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 398

 Score = 39.3 bits (90), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAK-AGDLAALLTNL------EDRDV 108
           VL  GPPG GKT LA+ VA  +  NF +  S  VIAK  G+ A ++  +       +  +
Sbjct: 175 VLLYGPPGTGKTLLARAVASNIDANFMKVVSSAVIAKFIGESARIIREMFAYARNHEPCI 234

Query: 109 LFIDEIHRL 117
           +F+DEI  L
Sbjct: 235 IFMDEIDAL 243


>gi|317010567|gb|ADU84314.1| cell division protein FtsH3 [Helicobacter pylori SouthAfrica7]
          Length = 550

 Score = 39.3 bits (90), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDR--DV 108
           VL +GPPG+GKT +A+ +A E  V F   SG   ++      A  +  L  + +     +
Sbjct: 198 VLLIGPPGVGKTMIAKALASEAKVPFFYESGSAFSQIYVGAGAKKVHELFMHAKKHAPSI 257

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 258 IFIDEIDAL 266


>gi|297568715|ref|YP_003690059.1| ATP-dependent protease La [Desulfurivibrio alkaliphilus AHT2]
 gi|296924630|gb|ADH85440.1| ATP-dependent protease La [Desulfurivibrio alkaliphilus AHT2]
          Length = 821

 Score = 39.3 bits (90), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 70/162 (43%), Gaps = 32/162 (19%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           + F GPPG+GKT+L Q +AR +G  F R + G V  +A              G +   L 
Sbjct: 398 LCFAGPPGVGKTSLGQSIARSMGRKFVRISLGGVRDEAEIRGHRRTYIGALPGRIIQSLR 457

Query: 102 NLEDRDVLF-IDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152
                + LF +DEI +L        S  + E+L P  ++F       E P       +LS
Sbjct: 458 KAGSCNPLFMLDEIDKLGMDFRGDPSSALLEVLDPE-QNFSFSDHYLEIP------FDLS 510

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           R   I     +  +  PL+DR  + I L+ Y  E+   I +R
Sbjct: 511 RVMFITTANLLDNIPGPLRDRMEV-IELSGYTEEEKMHIARR 551


>gi|225868471|ref|YP_002744419.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus
           equi subsp. zooepidemicus]
 gi|259491269|sp|C0MEW5|CLPX_STRS7 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|225701747|emb|CAW99121.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus
           equi subsp. zooepidemicus]
          Length = 409

 Score = 39.3 bits (90), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +A+ L V F       + +AG    D+  +L  L        
Sbjct: 113 NILMIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYNV 172

Query: 104 --EDRDVLFIDEIHRLS 118
              +R ++++DEI +++
Sbjct: 173 ERAERGIIYVDEIDKIA 189


>gi|254392446|ref|ZP_05007627.1| ATP-dependent Clp protease ATP-binding subunit clpX [Streptomyces
           clavuligerus ATCC 27064]
 gi|326440936|ref|ZP_08215670.1| ATP-dependent protease ATP-binding subunit ClpX [Streptomyces
           clavuligerus ATCC 27064]
 gi|197706114|gb|EDY51926.1| ATP-dependent Clp protease ATP-binding subunit clpX [Streptomyces
           clavuligerus ATCC 27064]
          Length = 427

 Score = 39.3 bits (90), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 59/133 (44%), Gaps = 35/133 (26%)

Query: 21  LLRPRTLEEF-----TGQVEACSNLKVFIE------------AAKARAEALD----HVLF 59
           L +PR + EF      GQ  A   L V +              A+ R +A++    ++L 
Sbjct: 61  LPKPREIYEFLEGYVVGQEPAKKALSVAVYNHYKRVQAGETGGAQGREDAIELAKSNILL 120

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDV---- 108
           +GP G GKT LAQ +AR L V F       + +AG +   + N+        D DV    
Sbjct: 121 LGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKKAE 180

Query: 109 ---LFIDEIHRLS 118
              ++IDEI +++
Sbjct: 181 TGIIYIDEIDKVA 193


>gi|195054278|ref|XP_001994053.1| GH22753 [Drosophila grimshawi]
 gi|193895923|gb|EDV94789.1| GH22753 [Drosophila grimshawi]
          Length = 581

 Score = 39.3 bits (90), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108
           VL VGPPG GKT LA+ VA E G  F + S   +     G+   +      +        
Sbjct: 338 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSATLTSKYRGESEKMVRLLFEMARFYAPST 397

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 398 IFIDEIDSL 406


>gi|253700219|ref|YP_003021408.1| ATP-dependent metalloprotease FtsH [Geobacter sp. M21]
 gi|251775069|gb|ACT17650.1| ATP-dependent metalloprotease FtsH [Geobacter sp. M21]
          Length = 612

 Score = 39.3 bits (90), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL +GPPG GKT LA+ +A E GV F S SG
Sbjct: 196 VLLMGPPGTGKTLLARAIAGEAGVPFFSISG 226


>gi|167746333|ref|ZP_02418460.1| hypothetical protein ANACAC_01042 [Anaerostipes caccae DSM 14662]
 gi|317470743|ref|ZP_07930128.1| ATP-dependent Clp protease [Anaerostipes sp. 3_2_56FAA]
 gi|167654326|gb|EDR98455.1| hypothetical protein ANACAC_01042 [Anaerostipes caccae DSM 14662]
 gi|316901878|gb|EFV23807.1| ATP-dependent Clp protease [Anaerostipes sp. 3_2_56FAA]
          Length = 433

 Score = 39.3 bits (90), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 28/132 (21%)

Query: 15  EDADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKAR-----AEALD----HVLFV 60
           +D +I L +P+ ++ F      GQ EA   L V +     R     +  +D    +++ +
Sbjct: 58  DDTEIHLNKPKEIKAFLDDYVIGQDEAKKVLSVAVYNHYKRILLGDSSDIDLQKSNIIML 117

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRD------ 107
           GP G GKT LAQ +A+ L V F       + +AG +   + N+        D D      
Sbjct: 118 GPTGSGKTLLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKIIQAADYDIERAQC 177

Query: 108 -VLFIDEIHRLS 118
            +++IDEI +++
Sbjct: 178 GIIYIDEIDKIT 189


>gi|156404594|ref|XP_001640492.1| predicted protein [Nematostella vectensis]
 gi|156227626|gb|EDO48429.1| predicted protein [Nematostella vectensis]
          Length = 602

 Score = 39.3 bits (90), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 32/67 (47%), Gaps = 10/67 (14%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGP----------VIAKAGDLAALLTNLEDRD 107
           L  GPPGLGKTTLA V+A+  G N    +             I  A  + ++L   E  +
Sbjct: 110 LLCGPPGLGKTTLAHVIAQHAGYNVVEMNASDDRAVEVFRQKIEVATQMKSVLGANERPN 169

Query: 108 VLFIDEI 114
            L IDEI
Sbjct: 170 CLVIDEI 176


>gi|32451662|gb|AAH54598.1| Rfc4 protein [Danio rerio]
          Length = 202

 Score = 39.3 bits (90), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 5/60 (8%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          +   RP+ ++E   Q E  + LK  +E A      L ++LF GPPG GKT+     AREL
Sbjct: 36 VEKYRPKCVDEVAFQEEVVAVLKKSLEGAD-----LPNLLFYGPPGTGKTSTILAAAREL 90


>gi|19263883|gb|AAH25134.1| Psmc6 protein [Mus musculus]
          Length = 293

 Score = 39.3 bits (90), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 56/124 (45%), Gaps = 23/124 (18%)

Query: 8   LSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV--------L 58
           L  N+S ED  ++S        E  G  E    L+  IE      E    V        L
Sbjct: 22  LVYNMSHEDPGNVSY------SEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCL 75

Query: 59  FVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA-GDLAALLTNLED--RD----VLF 110
             GPPG GKT LA+ VA +L  NF +  S  ++ K  G+ A L+  + +  RD    ++F
Sbjct: 76  LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIF 135

Query: 111 IDEI 114
           +DEI
Sbjct: 136 MDEI 139


>gi|50914432|ref|YP_060404.1| DNA polymerase III subunits gamma and tau [Streptococcus pyogenes
           MGAS10394]
 gi|209559603|ref|YP_002286075.1| DNA polymerase III subunits gamma and tau [Streptococcus pyogenes
           NZ131]
 gi|50903506|gb|AAT87221.1| DNA polymerase III subunit gamma/tau [Streptococcus pyogenes
           MGAS10394]
 gi|209540804|gb|ACI61380.1| DNA polymerase III subunits gamma and tau [Streptococcus pyogenes
           NZ131]
          Length = 556

 Score = 39.3 bits (90), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 8/91 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           R +T +E  GQ    + LK  +E+ K     + H  LF GP G GKT+ A++ A+ +   
Sbjct: 10  RSQTFDEMVGQSVISTTLKQAVESGK-----ISHAYLFSGPRGTGKTSAAKIFAKAMNCP 64

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID 112
            +    P      D+   +TN    DV+ ID
Sbjct: 65  NQVDGEP--CNQCDICRDITNGSLEDVIEID 93


>gi|15611341|ref|NP_222992.1| ATP-dependent zinc metallopeptidase [Helicobacter pylori J99]
 gi|4154795|gb|AAD05852.1| ATP-DEPENDENT ZINC METALLOPEPTIDASE [Helicobacter pylori J99]
          Length = 550

 Score = 39.3 bits (90), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDR--DV 108
           VL VGPPG+GKT +A+ +A E  V F   SG   ++      A  +  L  + +     +
Sbjct: 198 VLLVGPPGVGKTMIAKALASEARVPFFYESGSAFSQIYVGAGAKKVHELFMHAKKHAPSI 257

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 258 IFIDEIDAL 266


>gi|47209532|emb|CAF89804.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 795

 Score = 39.3 bits (90), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 33/65 (50%), Gaps = 8/65 (12%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRDV------L 109
           L  GPPG GKT LAQ VA EL +     S P +    +G+    L  L D+ V      L
Sbjct: 168 LLHGPPGCGKTLLAQAVAGELQLPMLKVSAPEVVSGVSGESEQKLRQLFDQAVSSAPCIL 227

Query: 110 FIDEI 114
           FIDEI
Sbjct: 228 FIDEI 232


>gi|28377431|ref|NP_784323.1| cell division protein FtsH, ATP-dependent zinc metallopeptidase
           [Lactobacillus plantarum WCFS1]
 gi|254555614|ref|YP_003062031.1| cell division protein FtsH, ATP-dependent zinc metallopeptidase
           [Lactobacillus plantarum JDM1]
 gi|308179644|ref|YP_003923772.1| cell division protein FtsH, ATP-dependent zinc metallopeptidase
           [Lactobacillus plantarum subsp. plantarum ST-III]
 gi|81586545|sp|Q88Z31|FTSH_LACPL RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|310943135|sp|C6VKW6|FTSH_LACPJ RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|28270263|emb|CAD63164.1| cell division protein FtsH, ATP-dependent zinc metallopeptidase
           [Lactobacillus plantarum WCFS1]
 gi|51537265|gb|AAU05734.1| FtsH [Lactobacillus plantarum]
 gi|254044541|gb|ACT61334.1| cell division protein FtsH, ATP-dependent zinc metallopeptidase
           [Lactobacillus plantarum JDM1]
 gi|308045135|gb|ADN97678.1| cell division protein FtsH, ATP-dependent zinc metallopeptidase
           [Lactobacillus plantarum subsp. plantarum ST-III]
          Length = 745

 Score = 39.3 bits (90), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           VL  GPPG GKT LA+ VA E GV F S SG    +   G  A+ + +L ++       +
Sbjct: 223 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPSI 282

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 283 IFIDEI 288


>gi|88797616|ref|ZP_01113205.1| cell division protein FtsH [Reinekea sp. MED297]
 gi|88779788|gb|EAR10974.1| cell division protein FtsH [Reinekea sp. MED297]
          Length = 643

 Score = 39.3 bits (90), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 95/218 (43%), Gaps = 42/218 (19%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL VGPPG GKT LA+ +A E  V F S SG    +   G  A+ + ++ ++       +
Sbjct: 192 VLMVGPPGTGKTLLAKAIAGEARVPFFSISGSDFVEMFVGVGASRVRDMFEQAKKQAPCI 251

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN-----LSRFT------LI 157
           +FIDEI  +                  + +G G   R   +N     +  F       +I
Sbjct: 252 IFIDEIDAVG-------------RSRGVGIGGGNDEREQTLNQLLVEMDGFEVNDGIIVI 298

Query: 158 AATTRVGLLTNPLQ--DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRS 215
           AAT R  +L   LQ   RF   + ++  +I   + I+     +  + V+D+   ++   +
Sbjct: 299 AATNRPDVLDPALQRPGRFDRQVVVSLPDIRGREQILN--VHMRKVPVSDDVDPKVI--A 354

Query: 216 RGTPRIAG----RLLRRVRDFAEVAHAKTITREIADAA 249
           RGTP  +G     L+     FA   + +T+T+E  D A
Sbjct: 355 RGTPGFSGADLANLVNEAALFAARINRRTVTQEEFDKA 392


>gi|87123285|ref|ZP_01079136.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Synechococcus
           sp. RS9917]
 gi|86169005|gb|EAQ70261.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Synechococcus
           sp. RS9917]
          Length = 450

 Score = 39.3 bits (90), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 4/73 (5%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNLEDRDVLFI 111
           ++L +GP G GKT LAQ +A  L V F       + +AG    D+  +L  L  +  + +
Sbjct: 137 NILLIGPTGCGKTLLAQTLAELLDVPFAVADATTLTEAGYVGEDVENILLRLLQKSDMDV 196

Query: 112 DEIHRLSIIVEEI 124
           D+  R  I ++EI
Sbjct: 197 DQAQRGIIYIDEI 209


>gi|330998242|ref|ZP_08322068.1| cell division protease FtsH [Paraprevotella xylaniphila YIT 11841]
 gi|329568934|gb|EGG50732.1| cell division protease FtsH [Paraprevotella xylaniphila YIT 11841]
          Length = 695

 Score = 39.3 bits (90), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 94/222 (42%), Gaps = 38/222 (17%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VL 109
           L VGPPG GKT LA+ VA E  V F S SG       V   A  +  L    +++   ++
Sbjct: 224 LLVGPPGTGKTLLAKAVAGEANVPFFSLSGSDFVEMFVGVGASRVRDLFRQAKEKSPCII 283

Query: 110 FIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINL-----------SRFTLIA 158
           FIDEI  +     +   PAM           G   R   +N            S   ++A
Sbjct: 284 FIDEIDAVGRARGK--NPAM----------GGNDERENTLNQLLTEMDGFGTNSGVIILA 331

Query: 159 ATTRVGLLTNPL--QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSR 216
           AT RV +L   L    RF   I ++  ++ + K +     K+    V  ++  +I + +R
Sbjct: 332 ATNRVDILDKALLRAGRFDRQIHVDLPDLNERKAVF----KVHLRPVKTDSTVDIDLLAR 387

Query: 217 GTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKM 258
            TP  +G  +  V + A +  A+   + ++    L  A+D++
Sbjct: 388 QTPGFSGADIANVCNEAALIAARHGKKAVSKDDFLS-AVDRI 428


>gi|308322095|gb|ADO28185.1| replication factor c subunit 4 [Ictalurus furcatus]
          Length = 358

 Score = 39.3 bits (90), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 5/60 (8%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          +   RP+ ++E   Q E  + LK  +E A      L ++LF GPPG GKT+     AREL
Sbjct: 36 VEKYRPKCVDEVAFQEEVVAVLKKSLEGAD-----LPNLLFYGPPGTGKTSTILAAAREL 90


>gi|300681251|sp|A3M072|LONM_PICST RecName: Full=Lon protease homolog, mitochondrial; Flags: Precursor
          Length = 1086

 Score = 39.3 bits (90), Expect = 0.76,   Method: Composition-based stats.
 Identities = 47/191 (24%), Positives = 77/191 (40%), Gaps = 42/191 (21%)

Query: 43  FIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNF------------------R 83
           FI   +   +    +L   GPPG GKT++A+ +A  L   +                  R
Sbjct: 539 FISMGRVSGKVDGKILCLTGPPGTGKTSIAKSIAESLNRKYVRIAMGGIQDVHEVKGHRR 598

Query: 84  STSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL--------SIIVEEILYPAMEDFQLD 135
           +  G +  +   ++AL        ++ IDEI +L        S    EIL P   +  +D
Sbjct: 599 TYVGSIPGRI--ISALKQAKTSNPLMLIDEIDKLDLSRSGGASSAFLEILDPEQNNAFVD 656

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR- 194
             +        VK++LS+   +     +G ++ PL+DR  I I +N Y   +   I +R 
Sbjct: 657 NYI-------DVKVDLSKVLFVCTANYLGNISPPLRDRMEI-IEVNGYTNNEKIEIAKRH 708

Query: 195 ----GAKLTGL 201
                AK  GL
Sbjct: 709 LIPDAAKKAGL 719


>gi|302853225|ref|XP_002958129.1| DNA replication factor C complex subunit 1 [Volvox carteri f.
           nagariensis]
 gi|300256597|gb|EFJ40860.1| DNA replication factor C complex subunit 1 [Volvox carteri f.
           nagariensis]
          Length = 963

 Score = 39.3 bits (90), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 18/79 (22%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEA------------------AKARAEALDHVLFV 60
           +   +PR   E  G     +NLK ++E+                  +K +  +    L  
Sbjct: 368 VDKYKPRNSSELVGNNTLVANLKQWLESWEQVHLRGAAAPTAKGGGSKPKDLSKKAALLS 427

Query: 61  GPPGLGKTTLAQVVARELG 79
           GPPG+GKT+ A ++ARE G
Sbjct: 428 GPPGIGKTSAAHIIAREAG 446


>gi|297458730|ref|XP_002684330.1| PREDICTED: katanin p60 subunit A-like 1 [Bos taurus]
          Length = 475

 Score = 39.3 bits (90), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL VGPPG GKT LA+ VA E G  F + S   +
Sbjct: 229 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTL 262


>gi|297626028|ref|YP_003687791.1| ATP-dependent Clp protease (ATP-dependent Clp protease, ATP-binding
           subunit ClpX) [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
 gi|296921793|emb|CBL56353.1| ATP-dependent Clp protease (ATP-dependent Clp protease, ATP-binding
           subunit ClpX) [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
          Length = 425

 Score = 39.3 bits (90), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------ED 105
           A  ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+        D
Sbjct: 114 AKSNILLIGPTGCGKTYLAQTLARMLNVPFAMADATALTEAGYVGEDVENILLKLLQAAD 173

Query: 106 RDV-------LFIDEIHRLS 118
            DV       ++IDEI +++
Sbjct: 174 FDVKRAQTGIIYIDEIDKVA 193


>gi|257468478|ref|ZP_05632572.1| putative iron ABC transporter, ATP-binding protein [Fusobacterium
           ulcerans ATCC 49185]
 gi|317062739|ref|ZP_07927224.1| amino acid ABC transporter [Fusobacterium ulcerans ATCC 49185]
 gi|313688415|gb|EFS25250.1| amino acid ABC transporter [Fusobacterium ulcerans ATCC 49185]
          Length = 327

 Score = 39.3 bits (90), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 11/92 (11%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +S L  + + ++ G+  A  N+ + IE         + + F+GP G GKTTL +V++   
Sbjct: 1   MSYLEVKNVNKYYGKFHALKNISLSIEKG-------EFISFLGPSGCGKTTLLRVISGLE 53

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLF 110
            +N    SG +  K  D+++L  +  +  ++F
Sbjct: 54  ELN----SGNLFLKGKDISSLHPSKRNFSIVF 81


>gi|256842924|ref|ZP_05548412.1| ATP-dependent Clp protease, ATP-binding subunit [Lactobacillus
           crispatus 125-2-CHN]
 gi|256848701|ref|ZP_05554135.1| ATP-dependent protease ATP-binding subunit [Lactobacillus crispatus
           MV-1A-US]
 gi|262045891|ref|ZP_06018855.1| ATP-dependent Clp protease, ATP-binding subunit [Lactobacillus
           crispatus MV-3A-US]
 gi|293381819|ref|ZP_06627791.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           crispatus 214-1]
 gi|312978251|ref|ZP_07789994.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           crispatus CTV-05]
 gi|256614344|gb|EEU19545.1| ATP-dependent Clp protease, ATP-binding subunit [Lactobacillus
           crispatus 125-2-CHN]
 gi|256714240|gb|EEU29227.1| ATP-dependent protease ATP-binding subunit [Lactobacillus crispatus
           MV-1A-US]
 gi|260573850|gb|EEX30406.1| ATP-dependent Clp protease, ATP-binding subunit [Lactobacillus
           crispatus MV-3A-US]
 gi|290921605|gb|EFD98635.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           crispatus 214-1]
 gi|310894770|gb|EFQ43841.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           crispatus CTV-05]
          Length = 421

 Score = 39.3 bits (90), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 14/83 (16%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD--------LAALLTNLE--- 104
           ++  +GP G GKT LAQ +AR L V F       + +AG         L  LL N +   
Sbjct: 111 NIAMIGPTGSGKTYLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDL 170

Query: 105 ---DRDVLFIDEIHRLSIIVEEI 124
               R +++IDEI ++S   E +
Sbjct: 171 ERAQRGIIYIDEIDKISKKSENV 193


>gi|255007542|ref|ZP_05279668.1| magnesium chelatase subunit I [Bacteroides fragilis 3_1_12]
          Length = 339

 Score = 39.3 bits (90), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 74/156 (47%), Gaps = 24/156 (15%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKAGDLAALLTNLEDR-------- 106
           HVL  G PG+ KT LA++ AR +  +F R    P +  +  L   + N++          
Sbjct: 63  HVLIEGVPGVAKTLLARLTARLIDADFSRVQFTPDLMPSDVLGTTVFNMKTNEFDFHRGP 122

Query: 107 ---DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
              +V+ +DEI+R     +  L+  ME+ Q  +   +G + R  ++    +T++A    V
Sbjct: 123 VFANVILVDEINRAPAKTQSALFEVMEERQASI---DGTTYRMGEL----YTILATQNPV 175

Query: 164 ---GLLTNPLQ--DRFGIPIRLNFYEIEDLKTIVQR 194
              G    P    DRF + I +++  +E+  +I++R
Sbjct: 176 EQEGTYKLPEAQLDRFLMKITMDYPSLEEEVSILER 211


>gi|253990890|ref|YP_003042246.1| ATP-dependent protease ATP-binding subunit ClpX [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253782340|emb|CAQ85504.1| ATP-dependent Clp protease ATP-binding subunit clpX [Photorhabdus
           asymbiotica]
          Length = 423

 Score = 39.3 bits (90), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LA+ +AR L V F       + +AG +   + N+            
Sbjct: 114 NILLIGPTGSGKTLLAETLARYLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 173

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 174 QKAQRGIVYIDEIDKIS 190


>gi|221121120|ref|XP_002160048.1| PREDICTED: similar to Replication factor C subunit 2 [Hydra
          magnipapillata]
          Length = 349

 Score = 39.3 bits (90), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP  L + TG  E    L+VF E        + +++  GPPG+GKTT    +AR+L
Sbjct: 41 RPLKLTDITGNEETIKRLQVFSEQGN-----VPNIIIAGPPGIGKTTSILCLARQL 91


>gi|215259685|gb|ACJ64334.1| 26S proteasome regulatory complex ATPase RPT4 [Culex tarsalis]
          Length = 323

 Score = 39.3 bits (90), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA-GDLAALLTNLED--RD----V 108
            L  GPPG GKT+LA+ VA +L  NF +  S  ++ K  G+ A L+  + +  RD    +
Sbjct: 107 CLLYGPPGTGKTSLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARDHQPCI 166

Query: 109 LFIDEIHRL 117
           +F+DEI  L
Sbjct: 167 IFMDEIDAL 175


>gi|213406089|ref|XP_002173816.1| chromosome transmission fidelity protein [Schizosaccharomyces
           japonicus yFS275]
 gi|212001863|gb|EEB07523.1| chromosome transmission fidelity protein [Schizosaccharomyces
           japonicus yFS275]
          Length = 825

 Score = 39.3 bits (90), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 16/25 (64%), Positives = 19/25 (76%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVN 81
           +L  GPPG GKTTLA V+AR+ G N
Sbjct: 284 LLLTGPPGSGKTTLAHVIARQAGYN 308


>gi|195978196|ref|YP_002123440.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus equi
           subsp. zooepidemicus MGCS10565]
 gi|238689818|sp|B4U360|CLPX_STREM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|195974901|gb|ACG62427.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus
           equi subsp. zooepidemicus MGCS10565]
          Length = 409

 Score = 39.3 bits (90), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +A+ L V F       + +AG    D+  +L  L        
Sbjct: 113 NILMIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYNV 172

Query: 104 --EDRDVLFIDEIHRLS 118
              +R ++++DEI +++
Sbjct: 173 ERAERGIIYVDEIDKIA 189


>gi|164686708|ref|ZP_02210736.1| hypothetical protein CLOBAR_00303 [Clostridium bartlettii DSM
           16795]
 gi|164604098|gb|EDQ97563.1| hypothetical protein CLOBAR_00303 [Clostridium bartlettii DSM
           16795]
          Length = 415

 Score = 39.3 bits (90), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +A+ L V F       + +AG    D+  +L  L        
Sbjct: 111 NILLLGPTGSGKTLLAQTLAKTLNVPFAMADATSLTEAGYVGEDVENILLKLIQAADFDI 170

Query: 104 --EDRDVLFIDEIHRLS 118
              +R +++IDEI +++
Sbjct: 171 EKAERGIIYIDEIDKIA 187


>gi|158522705|ref|YP_001530575.1| ATP-dependent protease La [Desulfococcus oleovorans Hxd3]
 gi|158511531|gb|ABW68498.1| ATP-dependent protease La [Desulfococcus oleovorans Hxd3]
          Length = 811

 Score = 39.3 bits (90), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 64/167 (38%), Gaps = 43/167 (25%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF------------------RSTSGPVIAKAGDLAA 98
           +  VGPPG+GKT+LA+ VAR  G NF                  R+  G +  K   + A
Sbjct: 363 LCLVGPPGVGKTSLAKSVARATGRNFVRISLGGVRDEAEIRGHRRTYIGSMPGKI--IQA 420

Query: 99  LLTNLEDRDVLFIDEIHRLSI--------IVEEILYP----AMEDFQLDLMVGEGPSARS 146
           L     +  V  +DE+ ++S+         + E+L P    A  D  LD+          
Sbjct: 421 LRKTSVNNPVFCLDEVDKMSMDFRGDPSAALLEVLDPEQNFAFNDHYLDM---------- 470

Query: 147 VKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
              +LS    +     +  +  PLQDR  I     + E E      Q
Sbjct: 471 -DYDLSDILFVTTANSLHSIPLPLQDRMEIIKLPGYTEYEKYNIATQ 516


>gi|50290931|ref|XP_447898.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74690835|sp|Q6FPE6|LONM_CANGA RecName: Full=Lon protease homolog, mitochondrial; Flags: Precursor
 gi|49527209|emb|CAG60847.1| unnamed protein product [Candida glabrata]
          Length = 1026

 Score = 39.3 bits (90), Expect = 0.76,   Method: Composition-based stats.
 Identities = 49/208 (23%), Positives = 85/208 (40%), Gaps = 34/208 (16%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLA 71
           S+E   I   R    E+  G  +    +  FI   K   +    ++ FVGPPG+GKT++ 
Sbjct: 448 SKEQYSIPRARKILDEDHYGMKDVKDRILEFIAVGKLLGKVDGKIICFVGPPGVGKTSIG 507

Query: 72  QVVARELGVN-FRSTSGPVI--------------AKAGDLAALLTNLEDRD-VLFIDEIH 115
           + ++R L    FR + G +               A  G +   L   + ++ ++ IDEI 
Sbjct: 508 KSISRALNRQFFRFSVGGMTDVAEIKGHRRTYIGALPGRIIQALKKCQTQNPLILIDEID 567

Query: 116 RL---------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
           ++         S  + E+L P   +  LD       +   + I+LS+   +     +  +
Sbjct: 568 KIGHGGIHGDPSAALLEVLDPEQNNSFLD-------NYLDIPIDLSKVLFVCTANSLDTI 620

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
             PL DR  + I L  Y  ED   I ++
Sbjct: 621 PRPLLDRMEV-IELTGYVAEDKIKIAEQ 647


>gi|42560599|ref|NP_975050.1| ATP-dependent zinc metallopeptidase FtsH [Mycoplasma mycoides
           subsp. mycoides SC str. PG1]
 gi|42492095|emb|CAE76692.1| ATP-dependent zinc metallopeptidase FtsH [Mycoplasma mycoides
           subsp. mycoides SC str. PG1]
          Length = 648

 Score = 39.3 bits (90), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 24/48 (50%), Positives = 28/48 (58%)

Query: 40  LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           LK   + A A A A   VL  GPPG GKT LA+ VA E  V+F S +G
Sbjct: 189 LKQPAKYASAGARAPKGVLMEGPPGTGKTLLAKAVAGEANVSFFSIAG 236


>gi|37527728|ref|NP_931073.1| ATP-dependent protease ATP-binding subunit [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|46576407|sp|Q7N0L4|CLPX_PHOLL RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|36787164|emb|CAE16240.1| ATP-dependent Clp protease ATP-binding subunit [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 423

 Score = 39.3 bits (90), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LA+ +AR L V F       + +AG +   + N+            
Sbjct: 114 NILLIGPTGSGKTLLAETLARYLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 173

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 174 QKAQRGIVYIDEIDKIS 190


>gi|28895734|ref|NP_802084.1| DNA polymerase III subunits gamma and tau [Streptococcus pyogenes
           SSI-1]
 gi|28810983|dbj|BAC63917.1| putative DNA polymerase III gamma/tau subunit [Streptococcus
           pyogenes SSI-1]
          Length = 557

 Score = 39.3 bits (90), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 8/91 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           R +T +E  GQ    + LK  +E+ K     + H  LF GP G GKT+ A++ A+ +   
Sbjct: 11  RSQTFDEMVGQSVISTTLKQAVESGK-----ISHAYLFSGPRGTGKTSAAKIFAKAMNCP 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID 112
            +    P      D+   +TN    DV+ ID
Sbjct: 66  NQVDGEP--CNQCDICRDITNGSLEDVIEID 94


>gi|331001372|ref|ZP_08324996.1| endopeptidase La [Parasutterella excrementihominis YIT 11859]
 gi|329568631|gb|EGG50433.1| endopeptidase La [Parasutterella excrementihominis YIT 11859]
          Length = 795

 Score = 39.3 bits (90), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 100/256 (39%), Gaps = 56/256 (21%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           +  VGPPG+GKT+L Q +AR  G  F R   G V  ++              G +   LT
Sbjct: 342 LCLVGPPGVGKTSLGQSIARATGRKFVRLALGGVRDESEIRGHRRTYIGSMPGRILQSLT 401

Query: 102 NLEDRDVLF-IDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLS 152
             E  + LF +DE+ ++ +           E+L P   +   D  V        V  +LS
Sbjct: 402 KAETNNPLFLLDEVDKMGMDYRGDPAAALLEVLDPEQNNTFQDHYV-------EVDFDLS 454

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR----------GAKLTGLA 202
               IA +  +  +  PL DR  + I L+ Y  ++   I QR          G K   L 
Sbjct: 455 HVMFIATSNSMN-IPAPLLDRMEV-IHLSGYTEDEKLHIAQRHLIPKQMKLNGVKPGELE 512

Query: 203 VTDEAACEIAMRSRGTPRIAG-RLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
           + D A  +I    R   R AG R L R            I R+     LL+    K+  +
Sbjct: 513 IEDSAIVDIV---RYYTREAGVRSLER--------EINKICRKTVRDILLKKTKGKVVAN 561

Query: 262 QLDLRYLTMIAR-NFG 276
             +L Y   + R NFG
Sbjct: 562 SDNLDYFLGVRRYNFG 577


>gi|325662429|ref|ZP_08151035.1| hypothetical protein HMPREF0490_01774 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471263|gb|EGC74487.1| hypothetical protein HMPREF0490_01774 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 213

 Score = 39.3 bits (90), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 28/128 (21%)

Query: 19  ISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEA---------LDHVLFVGPPG 64
           I+LL+P  ++ F      GQ EA   L V +     R  A           ++L +GP G
Sbjct: 61  INLLKPEEIKAFLDDYVIGQDEAKKVLAVSVYNHYKRIMAEKDLGVELQKSNILMLGPTG 120

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRD-------VLF 110
            GKT LAQ +A+ L V F       + +AG +   + N+        D D       +++
Sbjct: 121 CGKTFLAQTLAKILNVPFAIADATALTEAGYVGEDVENILLKIIQAADGDIERAEYGIIY 180

Query: 111 IDEIHRLS 118
           IDEI +++
Sbjct: 181 IDEIDKIT 188


>gi|330791557|ref|XP_003283859.1| hypothetical protein DICPUDRAFT_147573 [Dictyostelium purpureum]
 gi|325086245|gb|EGC39638.1| hypothetical protein DICPUDRAFT_147573 [Dictyostelium purpureum]
          Length = 851

 Score = 39.3 bits (90), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 8/71 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDR------DV 108
           +L  GPPG  KT LA+ +A E G+NF +  GP +++K  G+    + ++  +       +
Sbjct: 624 ILLYGPPGCSKTLLAKALATESGLNFIAVKGPELLSKWVGESERAVRDIFKKARQNAPSI 683

Query: 109 LFIDEIHRLSI 119
           LF DEI  L+I
Sbjct: 684 LFFDEIDGLAI 694


>gi|323127108|gb|ADX24405.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 409

 Score = 39.3 bits (90), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +A+ L V F       + +AG    D+  +L  L        
Sbjct: 113 NILMIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYNV 172

Query: 104 --EDRDVLFIDEIHRLS 118
              +R ++++DEI +++
Sbjct: 173 ERAERGIIYVDEIDKIA 189


>gi|314965443|gb|EFT09542.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL082PA2]
          Length = 717

 Score = 39.3 bits (90), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 203 VLLYGPPGTGKTLLARAVAGEAGVPFFSISG 233


>gi|315038089|ref|YP_004031657.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus
           amylovorus GRL 1112]
 gi|325956542|ref|YP_004291954.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus
           acidophilus 30SC]
 gi|312276222|gb|ADQ58862.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus
           amylovorus GRL 1112]
 gi|325333107|gb|ADZ07015.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus
           acidophilus 30SC]
          Length = 423

 Score = 39.3 bits (90), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 14/83 (16%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD--------LAALLTNLE--- 104
           ++  +GP G GKT LAQ +AR L V F       + +AG         L  LL N +   
Sbjct: 111 NIAMIGPTGSGKTYLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDI 170

Query: 105 ---DRDVLFIDEIHRLSIIVEEI 124
               R +++IDEI ++S   E +
Sbjct: 171 ERAQRGIIYIDEIDKISKKSENV 193


>gi|311695075|gb|ADP97948.1| ATP-dependent Clp protease ATP-binding subunit ClpX [marine
           bacterium HP15]
          Length = 427

 Score = 39.3 bits (90), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LA+ +AR L V F       + +AG +   + N+            
Sbjct: 117 NILLIGPTGSGKTLLAETLARMLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDV 176

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 177 DKAQRGIVYIDEIDKIS 193


>gi|301320650|gb|ADK69293.1| ATP-dependent metallopeptidase HflB [Mycoplasma mycoides subsp.
           mycoides SC str. Gladysdale]
          Length = 648

 Score = 39.3 bits (90), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 24/48 (50%), Positives = 28/48 (58%)

Query: 40  LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           LK   + A A A A   VL  GPPG GKT LA+ VA E  V+F S +G
Sbjct: 189 LKQPAKYASAGARAPKGVLMEGPPGTGKTLLAKAVAGEANVSFFSIAG 236


>gi|296081650|emb|CBI20655.3| unnamed protein product [Vitis vinifera]
          Length = 1053

 Score = 39.3 bits (90), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ +A E  V F S SG       V   A  +  L +  + R   +
Sbjct: 257 VLLVGPPGTGKTMLARAIAGEAEVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCI 316

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 317 IFIDEI 322


>gi|251782259|ref|YP_002996561.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|242390888|dbj|BAH81347.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
          Length = 409

 Score = 39.3 bits (90), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +A+ L V F       + +AG    D+  +L  L        
Sbjct: 113 NILMIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYNV 172

Query: 104 --EDRDVLFIDEIHRLS 118
              +R ++++DEI +++
Sbjct: 173 ERAERGIIYVDEIDKIA 189


>gi|226312836|ref|YP_002772730.1| hypothetical protein BBR47_32490 [Brevibacillus brevis NBRC 100599]
 gi|226095784|dbj|BAH44226.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 800

 Score = 39.3 bits (90), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 75/165 (45%), Gaps = 27/165 (16%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELG-VNFRSTSGPVIAKAGDL-------AALLTNLEDRD 107
           H +F G PG GKTT+AQ+ A+ L  + +      V A   DL        A LT  + R+
Sbjct: 567 HAVFTGNPGTGKTTVAQLYAKILQEIGYLKRGHLVTASRADLVAGYVGQTAALTRRKVRE 626

Query: 108 ----VLFIDEIHRLSIIVEEILYPAMEDF---QLDLMVGE-GPSARSVKINLSRFTLIAA 159
               VLFIDE + L       L     DF    +D +V E      ++ + L+ + L   
Sbjct: 627 ALGGVLFIDEAYSL-------LGGGERDFGQEAVDTLVEEMTKHEENLVVVLAGYPLEMN 679

Query: 160 TTRVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAV 203
           T    +++NP L  RF   I    Y +++L  I+++ A   G A+
Sbjct: 680 TL---MMSNPGLLSRFKKYIAFPDYTVKELVHILEQAACEVGYAI 721


>gi|255659247|ref|ZP_05404656.1| cell division protein FtsH [Mitsuokella multacida DSM 20544]
 gi|260848701|gb|EEX68708.1| cell division protein FtsH [Mitsuokella multacida DSM 20544]
          Length = 662

 Score = 39.3 bits (90), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 193 VLLFGPPGTGKTLLARAVAGEAGVPFFSISG 223


>gi|225451905|ref|XP_002279064.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 617

 Score = 39.3 bits (90), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLED------RDV 108
           VL VGPPG GKT LA+ VA E GV F S S     +   G  AA + +L +        +
Sbjct: 365 VLLVGPPGTGKTLLARAVAGEAGVPFFSVSASEFVELFVGRGAARVRDLFNVARKCAPSI 424

Query: 109 LFIDEI 114
           +FIDE+
Sbjct: 425 IFIDEL 430


>gi|224532920|ref|ZP_03673531.1| cell division protein FtsH [Borrelia burgdorferi WI91-23]
 gi|224512158|gb|EEF82548.1| cell division protein FtsH [Borrelia burgdorferi WI91-23]
          Length = 350

 Score = 39.3 bits (90), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 46/104 (44%), Gaps = 15/104 (14%)

Query: 26  TLEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ E    L+  +E         K  A+    VL VG PG GKT LA+ VA E 
Sbjct: 170 TFKDVAGQEEVKQELREVVEFLKNPKKFEKIGAKIPKGVLLVGSPGTGKTLLAKAVAGEA 229

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEI 114
           GV+F   SG       V   A  +  L  N       ++FIDE+
Sbjct: 230 GVSFFHMSGSDFVEMFVGVGASRVRDLFDNARKNSPCIIFIDEL 273


>gi|224045088|ref|XP_002199401.1| PREDICTED: vacuolar protein sorting factor 4B [Taeniopygia guttata]
          Length = 441

 Score = 39.3 bits (90), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 9/70 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVN--FRSTSGPVIAKA-GDLAALLTNL-----EDR-D 107
           +L  GPPG GKT LA+ VA E   +  F  +S  +++K  G+   L+ NL     E++  
Sbjct: 168 ILLFGPPGTGKTYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKNLFQLARENKPS 227

Query: 108 VLFIDEIHRL 117
           ++FIDEI  L
Sbjct: 228 IIFIDEIDSL 237


>gi|255561118|ref|XP_002521571.1| Protein MSP1, putative [Ricinus communis]
 gi|223539249|gb|EEF40842.1| Protein MSP1, putative [Ricinus communis]
          Length = 626

 Score = 39.3 bits (90), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 84/198 (42%), Gaps = 47/198 (23%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------EDRD-- 107
           +++F GPPG GKT +A+ +AR+ G+++   +G  +A  G  A    +       + R   
Sbjct: 385 NMMFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVTKIHQIFDWAKKSRKGL 444

Query: 108 VLFIDEI-----HRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTR 162
           +LFIDE       R S  + E    A+      L+   G  +R +        L+ AT R
Sbjct: 445 LLFIDEADAFLSERNSTHMSEAQRSALN----ALLFRTGDQSRDI-------VLVLATNR 493

Query: 163 VGLLTNPLQDR------FGIPIR------LNFYEIEDLKT-----------IVQRGAKLT 199
            G L + + DR      F +P        LN Y  + L             + ++  K+T
Sbjct: 494 PGDLDSAITDRIDEVIEFPLPGEEERFKLLNLYLSKYLSHEDDNGSDWGLFVKKKPQKIT 553

Query: 200 GLAVTDEAACEIAMRSRG 217
              ++++  CE A ++ G
Sbjct: 554 MKDISEDVICEAAKKTEG 571


>gi|189219923|ref|YP_001940563.1| ATP-dependent Zn protease FtsH [Methylacidiphilum infernorum V4]
 gi|310943095|sp|B3DY14|FTSH2_METI4 RecName: Full=ATP-dependent zinc metalloprotease FtsH 2
 gi|189186781|gb|ACD83966.1| ATP-dependent Zn protease FtsH [Methylacidiphilum infernorum V4]
          Length = 641

 Score = 39.3 bits (90), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 100/221 (45%), Gaps = 35/221 (15%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL VGPPG GKT LA+ +A E  V F S SG    +   G  A+ + ++ ++       +
Sbjct: 189 VLMVGPPGTGKTLLAKAIAGEADVPFFSISGSDFVEMFVGVGASRVRDMFEQARRHAPCI 248

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQ--LDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
           +FIDEI  +       L    ++ +  L+ ++ E     S +       +IAAT R  +L
Sbjct: 249 VFIDEIDAVGRARGTGLGGGHDEREQTLNALLVEMDGIESQE----GVIVIAATNRKDVL 304

Query: 167 TNPL--QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGR 224
              L    RF   +R+N  +I   + I++  A+   L+       +++  +RGTP  +G 
Sbjct: 305 DPALLRPGRFDREVRVNLPDIRGREQILRVHAQKIKLSKN----ADLSALARGTPGFSG- 359

Query: 225 LLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDL 265
                   AE+A+       I +AAL+     K   DQ DL
Sbjct: 360 --------AELANL------INEAALIAAKKGKDNVDQPDL 386


>gi|169342287|ref|ZP_02863365.1| ATP-dependent protease LonB [Clostridium perfringens C str.
           JGS1495]
 gi|169299614|gb|EDS81673.1| ATP-dependent protease LonB [Clostridium perfringens C str.
           JGS1495]
          Length = 570

 Score = 39.3 bits (90), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 5/55 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           RP  LEE  GQ +    LK  +     +     HV+  GPPG+GKT  A+++  E
Sbjct: 64  RPSNLEEIIGQEKGIKALKAALCGPNPQ-----HVIIYGPPGVGKTAAARIILEE 113


>gi|167860135|ref|NP_001103572.2| CTF18, chromosome transmission fidelity factor 18 homolog [Danio
           rerio]
          Length = 957

 Score = 39.3 bits (90), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 10/67 (14%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNF------RSTSGPVIAKAGDLAALLTNL----EDRD 107
           L  GPPGLGKTTLA ++A+  G N          S  +  K  D A  + ++    E  +
Sbjct: 370 LLSGPPGLGKTTLAHIIAKHAGYNVVEINASDDRSAELFQKRIDTATQMKSVLGANEKPN 429

Query: 108 VLFIDEI 114
            L IDEI
Sbjct: 430 CLIIDEI 436


>gi|222480480|ref|YP_002566717.1| AAA ATPase central domain protein [Halorubrum lacusprofundi ATCC
           49239]
 gi|222453382|gb|ACM57647.1| AAA ATPase central domain protein [Halorubrum lacusprofundi ATCC
           49239]
          Length = 776

 Score = 39.3 bits (90), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 22/32 (68%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +L  GPPG GKT LA+ +A E GVNF   +GP
Sbjct: 554 ILLHGPPGTGKTLLARGIAGESGVNFIQVAGP 585



 Score = 36.6 bits (83), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL  GPPG GKT +A+ VA E+   F +  GP I
Sbjct: 290 VLLHGPPGTGKTLIARAVANEVDATFITVDGPEI 323


>gi|154499593|ref|ZP_02037631.1| hypothetical protein BACCAP_03249 [Bacteroides capillosus ATCC
           29799]
 gi|150271671|gb|EDM98915.1| hypothetical protein BACCAP_03249 [Bacteroides capillosus ATCC
           29799]
          Length = 625

 Score = 39.3 bits (90), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 34/67 (50%), Gaps = 10/67 (14%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI---------AKAGDLAALLTNLEDRD 107
           VL VGPPG GKT LA+ VA E  V F S SG            AK  DL     N +   
Sbjct: 219 VLLVGPPGTGKTLLAKAVAGEAKVPFFSISGSEFVEMFVGMGAAKVRDLFK-QANEKAPC 277

Query: 108 VLFIDEI 114
           ++FIDEI
Sbjct: 278 IVFIDEI 284


>gi|149916366|ref|ZP_01904886.1| ATP-dependent protease ATP-binding subunit [Roseobacter sp.
           AzwK-3b]
 gi|149809820|gb|EDM69672.1| ATP-dependent protease ATP-binding subunit [Roseobacter sp.
           AzwK-3b]
          Length = 420

 Score = 39.3 bits (90), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+            
Sbjct: 112 NILLIGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSSEYNV 171

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDE+ +++
Sbjct: 172 ERAQRGIVYIDEVDKIT 188


>gi|94988378|ref|YP_596479.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           pyogenes MGAS9429]
 gi|94992260|ref|YP_600359.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           pyogenes MGAS2096]
 gi|166215210|sp|Q1JC93|CLPX_STRPB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|166215211|sp|Q1JM77|CLPX_STRPC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|94541886|gb|ABF31935.1| ATP-dependent endopeptidase clp ATP-binding subunit [Streptococcus
           pyogenes MGAS9429]
 gi|94545768|gb|ABF35815.1| ATP-dependent endopeptidase clp ATP-binding subunit clpX
           [Streptococcus pyogenes MGAS2096]
          Length = 409

 Score = 39.3 bits (90), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +A+ L V F       + +AG    D+  +L  L        
Sbjct: 113 NILMIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYNV 172

Query: 104 --EDRDVLFIDEIHRLS 118
              +R ++++DEI +++
Sbjct: 173 ERAERGIIYVDEIDKIA 189


>gi|15675296|ref|NP_269470.1| DNA polymerase III subunits gamma and tau [Streptococcus pyogenes
           M1 GAS]
 gi|71910925|ref|YP_282475.1| DNA polymerase III subunits gamma/tau [Streptococcus pyogenes
           MGAS5005]
 gi|9789547|gb|AAF98348.1| DNA polymerase III gamma/tau subunits [Streptococcus pyogenes]
 gi|13622473|gb|AAK34191.1| DNA polymerase III subunits gamma / tau [Streptococcus pyogenes M1
           GAS]
 gi|71853707|gb|AAZ51730.1| DNA polymerase III subunit gamma/tau [Streptococcus pyogenes
           MGAS5005]
          Length = 556

 Score = 39.3 bits (90), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 8/91 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           R +T +E  GQ    + LK  +E+ K     + H  LF GP G GKT+ A++ A+ +   
Sbjct: 10  RSQTFDEMVGQSVISTTLKQAVESGK-----ISHAYLFSGPRGTGKTSAAKIFAKAMNCP 64

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID 112
            +    P      D+   +TN    DV+ ID
Sbjct: 65  NQVDGEP--CNQCDICRDITNGSLEDVIEID 93


>gi|52425901|ref|YP_089038.1| ATP-dependent protease ATP-binding subunit [Mannheimia
           succiniciproducens MBEL55E]
 gi|61211443|sp|Q65RF7|CLPX_MANSM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|52307953|gb|AAU38453.1| ClpX protein [Mannheimia succiniciproducens MBEL55E]
          Length = 412

 Score = 39.3 bits (90), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--------ALLTNLE--- 104
           ++L +GP G GKT LA+ +AR L V F       + +AG +          LL N +   
Sbjct: 113 NILLIGPTGSGKTLLAETMARMLNVPFAMADATTLTEAGYVGEDVENVIQKLLQNCDYDT 172

Query: 105 ---DRDVLFIDEIHRLS 118
               R +++IDEI +++
Sbjct: 173 EKAQRGIIYIDEIDKIT 189


>gi|34558275|ref|NP_908090.1| MOXR like ATPase [Wolinella succinogenes DSM 1740]
 gi|34483994|emb|CAE10990.1| conserved hypothetical protein-MOXR LIKE ATPASES [Wolinella
           succinogenes]
          Length = 315

 Score = 39.3 bits (90), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 38/166 (22%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTS-GPVIAKAGDLAALLTNLEDRD------- 107
           H+L  G PGL KTT  + ++R LG++ +     P +  +  L A + N ++RD       
Sbjct: 35  HILLEGVPGLAKTTAIKALSRALGLSLKRLQFTPDLLPSDILGAEVYNPKERDFYIKKGP 94

Query: 108 ----VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
               ++  DEI+R    V+  L  AM++ Q+ L         S    L    L+ AT   
Sbjct: 95  IFAHLILADEINRAPAKVQSALLEAMQERQVTL--------GSESFVLPEPFLVMAT--- 143

Query: 164 GLLTNPLQ------------DRFGIPIRLNFYEIEDLKTIVQRGAK 197
               NP++            DRF + + + +   E+   I Q G+K
Sbjct: 144 ---QNPIEQEGAYALPEAQLDRFMMKVEVGYGRYEEELLIAQIGSK 186


>gi|22298053|ref|NP_681300.1| ATP-dependent protease ATP-binding subunit [Thermosynechococcus
           elongatus BP-1]
 gi|46576560|sp|Q8DLI1|CLPX_THEEB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|22294231|dbj|BAC08062.1| ATP-dependent protease ATPase subunit [Thermosynechococcus
           elongatus BP-1]
          Length = 440

 Score = 39.3 bits (90), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 54/129 (41%), Gaps = 33/129 (25%)

Query: 23  RPRTLEEF-----TGQVEACSNLKVFIEAAKARAEALD--------------HVLFVGPP 63
           +PR ++EF      GQ EA   L V +     R   LD              ++L +GP 
Sbjct: 80  KPRQIKEFLDKHVVGQHEAKKILAVAVYNHYKRLSLLDSDQRGDDNVELQKSNILLIGPT 139

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------------EDRDVL 109
           G GKT  AQ +A+ L V F       + +AG +   + N+                R ++
Sbjct: 140 GSGKTLSAQTLAKLLDVPFAVADATTLTEAGYVGEDVENILLRLLQNANMDVEEAQRGII 199

Query: 110 FIDEIHRLS 118
           +IDEI +++
Sbjct: 200 YIDEIDKIA 208


>gi|46116936|ref|XP_384486.1| hypothetical protein FG04310.1 [Gibberella zeae PH-1]
          Length = 1014

 Score = 39.3 bits (90), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 20/34 (58%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
            L  GPPG GKT LA+ VA+E G N    SG  I
Sbjct: 744 CLLYGPPGTGKTLLAKAVAKESGANMLEISGATI 777


>gi|327329237|gb|EGE70997.1| cell division protein FtsH [Propionibacterium acnes HL103PA1]
          Length = 717

 Score = 39.3 bits (90), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 203 VLLYGPPGTGKTLLARAVAGEAGVPFFSISG 233


>gi|315094259|gb|EFT66235.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL060PA1]
          Length = 717

 Score = 39.3 bits (90), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 203 VLLYGPPGTGKTLLARAVAGEAGVPFFSISG 233


>gi|314922407|gb|EFS86238.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL001PA1]
          Length = 717

 Score = 39.3 bits (90), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 203 VLLYGPPGTGKTLLARAVAGEAGVPFFSISG 233


>gi|313835711|gb|EFS73425.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL037PA2]
 gi|314928383|gb|EFS92214.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL044PA1]
 gi|314970189|gb|EFT14287.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL037PA3]
 gi|328908037|gb|EGG27796.1| putative cell division protein FtsH [Propionibacterium sp. P08]
          Length = 719

 Score = 39.3 bits (90), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 203 VLLYGPPGTGKTLLARAVAGEAGVPFFSISG 233


>gi|312149056|gb|ADQ29127.1| cell division protein FtsH [Borrelia burgdorferi N40]
          Length = 639

 Score = 39.3 bits (90), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 7/69 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ E    L+  +E         K  A+    VL VG PG GKT LA+ VA E 
Sbjct: 170 TFKDVAGQEEVKQELREVVEFLKNPKKFEKIGAKIPKGVLLVGSPGTGKTLLAKAVAGEA 229

Query: 79  GVNFRSTSG 87
           GV+F   SG
Sbjct: 230 GVSFFHMSG 238


>gi|307128584|ref|YP_003880614.1| ATP-dependent protease ATP-binding subunit [Candidatus Sulcia
           muelleri CARI]
 gi|306483046|gb|ADM89916.1| ATP-dependent protease ATP-binding subunit [Candidatus Sulcia
           muelleri CARI]
          Length = 344

 Score = 39.3 bits (90), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 25/125 (20%)

Query: 19  ISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEALD------HVLFVGPPGLGK 67
           + L  P+ +++F      GQ +A   + V +     R   L+      +VL +G  G GK
Sbjct: 1   MKLNYPKKIKDFLDQYVIGQEDAKKTISVAVYNHYKRIYLLNDEIDKSNVLMIGDTGTGK 60

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTN----------LEDRDVLFIDE 113
           T +A+ +++ L V F       + +AG    D+ ++LT           L ++ ++FIDE
Sbjct: 61  TLIAKSISKFLNVPFAIADATSLTEAGYVGEDVESILTKLLQSANYNIALAEKGIVFIDE 120

Query: 114 IHRLS 118
           I ++S
Sbjct: 121 IDKIS 125


>gi|301757912|ref|XP_002914803.1| PREDICTED: katanin p60 ATPase-containing subunit A-like 1-like
           [Ailuropoda melanoleuca]
          Length = 490

 Score = 39.3 bits (90), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL VGPPG GKT LA+ VA E G  F + S   +
Sbjct: 244 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTL 277


>gi|282853315|ref|ZP_06262652.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes J139]
 gi|282582768|gb|EFB88148.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes J139]
 gi|314982855|gb|EFT26947.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL110PA3]
 gi|315091173|gb|EFT63149.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL110PA4]
          Length = 717

 Score = 39.3 bits (90), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 203 VLLYGPPGTGKTLLARAVAGEAGVPFFSISG 233


>gi|322420024|ref|YP_004199247.1| ATP-dependent metalloprotease FtsH [Geobacter sp. M18]
 gi|320126411|gb|ADW13971.1| ATP-dependent metalloprotease FtsH [Geobacter sp. M18]
          Length = 612

 Score = 39.3 bits (90), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL +GPPG GKT LA+ +A E GV F S SG
Sbjct: 196 VLLMGPPGTGKTLLARAIAGEAGVPFFSISG 226


>gi|229824539|ref|ZP_04450608.1| hypothetical protein GCWU000282_01883 [Catonella morbi ATCC 51271]
 gi|229785910|gb|EEP22024.1| hypothetical protein GCWU000282_01883 [Catonella morbi ATCC 51271]
          Length = 668

 Score = 39.3 bits (90), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108
           VL  GPPG GKT LA+ VA E GV F + SG       V   A  +  L  N +     +
Sbjct: 210 VLLEGPPGTGKTLLAKAVAGEAGVPFFTMSGSEFVEMFVGVGASRVRDLFENAKKNAPAI 269

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 270 IFIDEI 275


>gi|256396399|ref|YP_003117963.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Catenulispora
           acidiphila DSM 44928]
 gi|256362625|gb|ACU76122.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Catenulispora
           acidiphila DSM 44928]
          Length = 438

 Score = 39.3 bits (90), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 37/135 (27%)

Query: 21  LLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEALDH------------------V 57
           L +P+ + +F      GQ  A  +L V +     R +A D+                  +
Sbjct: 61  LPKPKEIYDFLDEYVIGQENAKKSLSVAVYNHYKRVQAGDYQRERGGRRGEQIELAKSNI 120

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---EDRD--- 107
           L +GP G GKT LAQ +AR L V F       + +AG    D+  +L  L    D D   
Sbjct: 121 LLLGPTGCGKTYLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDIKK 180

Query: 108 ----VLFIDEIHRLS 118
               +++IDEI +++
Sbjct: 181 AETGIIYIDEIDKIA 195


>gi|269125775|ref|YP_003299145.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Thermomonospora curvata DSM 43183]
 gi|268310733|gb|ACY97107.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Thermomonospora curvata DSM 43183]
          Length = 425

 Score = 39.3 bits (90), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 31/130 (23%)

Query: 20  SLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEALD------------HVLFVGP 62
           SL +PR + EF      GQ  A   L V +     R ++ D            ++L +GP
Sbjct: 60  SLPKPREIYEFLDSYVIGQEAAKKALSVAVYNHYKRIQSGDSGRDDSVELAKSNILLLGP 119

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---EDRDV------- 108
            G GKT LAQ +A+ L V F       + +AG    D+  +L  L    D DV       
Sbjct: 120 TGSGKTLLAQTLAKLLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKKAETGI 179

Query: 109 LFIDEIHRLS 118
           ++IDE+ +++
Sbjct: 180 IYIDEVDKIA 189


>gi|219684938|ref|ZP_03539879.1| cell division protein FtsH [Borrelia garinii PBr]
 gi|219671676|gb|EED28732.1| cell division protein FtsH [Borrelia garinii PBr]
          Length = 639

 Score = 39.3 bits (90), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 7/69 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ E    L+  +E         K  A+    VL VG PG GKT LA+ VA E 
Sbjct: 170 TFKDVAGQEEVKQELREVVEFLKNPKKFEKIGAKIPKGVLLVGSPGTGKTLLAKAVAGEA 229

Query: 79  GVNFRSTSG 87
           GV+F   SG
Sbjct: 230 GVSFFHMSG 238


>gi|146318491|ref|YP_001198203.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus suis
           05ZYH33]
 gi|145689297|gb|ABP89803.1| ATP-dependent protease Clp, ATPase subunit [Streptococcus suis
           05ZYH33]
          Length = 396

 Score = 39.3 bits (90), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +A+ L V F       + +AG    D+  +L  L        
Sbjct: 112 NILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNI 171

Query: 104 --EDRDVLFIDEIHRLS 118
              +R ++++DEI +++
Sbjct: 172 DRAERGIIYVDEIDKIA 188


>gi|86160657|ref|YP_467442.1| FtsH-2 peptidase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85777168|gb|ABC84005.1| membrane protease FtsH catalytic subunit [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 621

 Score = 39.3 bits (90), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 38/69 (55%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           VL VGPPG GKT LA+ VA E  V F S SG    +   G  AA + +L ++       +
Sbjct: 197 VLLVGPPGTGKTLLAKAVAGEASVPFFSISGSEFVEMFVGVGAARVRDLFEQARAKAPAI 256

Query: 109 LFIDEIHRL 117
           +FIDE+  L
Sbjct: 257 IFIDELDAL 265


>gi|83588978|ref|YP_428987.1| FtsH-2 peptidase [Moorella thermoacetica ATCC 39073]
 gi|83571892|gb|ABC18444.1| membrane protease FtsH catalytic subunit [Moorella thermoacetica
           ATCC 39073]
          Length = 645

 Score = 39.3 bits (90), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 193 VLLFGPPGTGKTLLARAVAGEAGVPFFSISG 223


>gi|89892947|ref|YP_516434.1| hypothetical protein DSY0201 [Desulfitobacterium hafniense Y51]
 gi|89332395|dbj|BAE81990.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 657

 Score = 39.3 bits (90), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 193 VLLFGPPGTGKTLLARAVAGEAGVPFFSISG 223


>gi|326496172|dbj|BAJ90707.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 351

 Score = 39.3 bits (90), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 28/53 (52%)

Query: 34  VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTS 86
           VE  S L+  +   K  A     VL  GPPG GKT LA+ VA E G+ F S S
Sbjct: 77  VEIVSCLRGSLNYKKLGARLPRGVLLAGPPGTGKTLLAKAVAGEAGIPFFSVS 129


>gi|325684388|gb|EGD26557.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus
           delbrueckii subsp. lactis DSM 20072]
          Length = 417

 Score = 39.3 bits (90), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 14/83 (16%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD--------LAALLTNLE--- 104
           ++  +GP G GKT LAQ +AR L V F       + +AG         L  LL N +   
Sbjct: 111 NIALIGPTGSGKTYLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDL 170

Query: 105 ---DRDVLFIDEIHRLSIIVEEI 124
               R +++IDEI ++S   E +
Sbjct: 171 ERAQRGIIYIDEIDKISKKSENV 193


>gi|322698624|gb|EFY90393.1| activator 1 subunit 3 [Metarhizium acridum CQMa 102]
          Length = 921

 Score = 39.3 bits (90), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 5/60 (8%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           I   RP TL++ +G  +  + +  F+++ +     L H+L  GPPG GKT+    +AR +
Sbjct: 46  IEKYRPATLDDVSGHQDILATINKFVDSNR-----LPHLLLYGPPGTGKTSTILALARRI 100


>gi|300811984|ref|ZP_07092441.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
 gi|300497045|gb|EFK32110.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
          Length = 417

 Score = 39.3 bits (90), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 14/83 (16%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD--------LAALLTNLE--- 104
           ++  +GP G GKT LAQ +AR L V F       + +AG         L  LL N +   
Sbjct: 111 NIALIGPTGSGKTYLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDL 170

Query: 105 ---DRDVLFIDEIHRLSIIVEEI 124
               R +++IDEI ++S   E +
Sbjct: 171 ERAQRGIIYIDEIDKISKKSENV 193


>gi|298242539|ref|ZP_06966346.1| AAA family ATPase, CDC48 subfamily [Ktedonobacter racemifer DSM
           44963]
 gi|297555593|gb|EFH89457.1| AAA family ATPase, CDC48 subfamily [Ktedonobacter racemifer DSM
           44963]
          Length = 893

 Score = 39.3 bits (90), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 24/42 (57%)

Query: 47  AKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           A A+ E    VL  GPPG GKT +A+ +A +   NF S  GP
Sbjct: 556 ANAKVEPPRGVLLAGPPGSGKTLIARALANQCEANFISIKGP 597



 Score = 37.4 bits (85), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL------EDRDV 108
           VL  GPPG GKT +A+VVA E    F   +GP I     G+  + L ++      +   +
Sbjct: 293 VLLYGPPGTGKTLIARVVAAETNAAFFVINGPEIINKFYGESESRLRSVFQEAQRQAPSI 352

Query: 109 LFIDEIHRLS 118
           +FIDE+  L+
Sbjct: 353 IFIDELDALA 362


>gi|295692729|ref|YP_003601339.1| ATP-dependent clp protease ATP-binding subunit clpx [Lactobacillus
           crispatus ST1]
 gi|295030835|emb|CBL50314.1| ATP-dependent Clp protease ATP-binding subunit clpX [Lactobacillus
           crispatus ST1]
          Length = 421

 Score = 39.3 bits (90), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 14/83 (16%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD--------LAALLTNLE--- 104
           ++  +GP G GKT LAQ +AR L V F       + +AG         L  LL N +   
Sbjct: 111 NIAMIGPTGSGKTYLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDL 170

Query: 105 ---DRDVLFIDEIHRLSIIVEEI 124
               R +++IDEI ++S   E +
Sbjct: 171 ERAQRGIIYIDEIDKISKKSENV 193


>gi|282880881|ref|ZP_06289574.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella
           timonensis CRIS 5C-B1]
 gi|281305263|gb|EFA97330.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella
           timonensis CRIS 5C-B1]
          Length = 414

 Score = 39.3 bits (90), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           +++ VG  G GKT LA+ +AR L V F      V  +AG    D+ ++L+ L        
Sbjct: 115 NIIMVGSTGTGKTLLAKTIARLLDVPFTIVDATVFTEAGYVGEDVESILSRLLQVANYDV 174

Query: 104 --EDRDVLFIDEIHRLS 118
              +R ++FIDEI +++
Sbjct: 175 AAAERGIVFIDEIDKIA 191


>gi|282898111|ref|ZP_06306106.1| ClpX, ATPase regulatory subunit [Raphidiopsis brookii D9]
 gi|281197255|gb|EFA72156.1| ClpX, ATPase regulatory subunit [Raphidiopsis brookii D9]
          Length = 252

 Score = 39.3 bits (90), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 31/127 (24%)

Query: 23  RPRTLEEF-----TGQVEACSNLKV-----FIEAAKARAEALD-------HVLFVGPPGL 65
           +PR ++ +      GQ EA   L V     +   A A+ +A D       ++L +GP G 
Sbjct: 63  KPREIKNYLDDHVIGQDEAKKVLSVAVYNHYKRLAVAQGKAEDSVELQKSNILLIGPTGC 122

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALL------TNLE----DRDVLFI 111
           GKT LAQ +A+ L V F       + +AG    D+  +L       NL+     R +++I
Sbjct: 123 GKTLLAQTLAKILDVPFAVADATTLTEAGYVGEDVENILLRLLQVANLDVEEAQRGIIYI 182

Query: 112 DEIHRLS 118
           DEI +++
Sbjct: 183 DEIDKIA 189


>gi|254882796|ref|ZP_05255506.1| metalloprotease FtsH [Bacteroides sp. 4_3_47FAA]
 gi|294778231|ref|ZP_06743657.1| ATP-dependent metallopeptidase HflB [Bacteroides vulgatus PC510]
 gi|319644311|ref|ZP_07998805.1| AAA-metalloprotease FtsH with ATPase domain-containing protein
           [Bacteroides sp. 3_1_40A]
 gi|254835589|gb|EET15898.1| metalloprotease FtsH [Bacteroides sp. 4_3_47FAA]
 gi|294447859|gb|EFG16433.1| ATP-dependent metallopeptidase HflB [Bacteroides vulgatus PC510]
 gi|317384206|gb|EFV65179.1| AAA-metalloprotease FtsH with ATPase domain-containing protein
           [Bacteroides sp. 3_1_40A]
          Length = 668

 Score = 39.3 bits (90), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 7/69 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ EA   ++  +E  K   +  +         L VGPPG GKT LA+ VA E 
Sbjct: 188 TFKDVAGQAEAKQEVEEIVEFLKQPQKYTELGGKIPKGALLVGPPGTGKTLLAKAVAGEA 247

Query: 79  GVNFRSTSG 87
            V F S SG
Sbjct: 248 DVPFFSLSG 256


>gi|254773201|ref|ZP_05214717.1| ATP-dependent metallopeptidase HflB [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 799

 Score = 39.3 bits (90), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 14/94 (14%)

Query: 34  VEACSNLKVFIEAAKARAEAL-----DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VE    +K F++    R +AL       VL  GPPG GKT LA+ VA E GV F + SG 
Sbjct: 172 VEELYEIKDFLQNP-GRYQALGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGS 230

Query: 89  VIAK--AGDLAALLTNLEDRD------VLFIDEI 114
              +   G  A+ + +L D+       ++F+DEI
Sbjct: 231 DFVEMFVGVGASRVRDLFDQAKQNNPCIIFVDEI 264


>gi|227489340|ref|ZP_03919656.1| cell division protein FtsH [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227090713|gb|EEI26025.1| cell division protein FtsH [Corynebacterium glucuronolyticum ATCC
           51867]
          Length = 776

 Score = 39.3 bits (90), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT +A+ VA E GV F S SG
Sbjct: 214 VLLYGPPGTGKTLMARAVAGEAGVPFYSISG 244


>gi|225870476|ref|YP_002746423.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus
           equi subsp. equi 4047]
 gi|254763864|sp|C0M9R7|CLPX_STRE4 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|225699880|emb|CAW93774.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus
           equi subsp. equi 4047]
          Length = 409

 Score = 39.3 bits (90), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +A+ L V F       + +AG    D+  +L  L        
Sbjct: 113 NILMIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYNV 172

Query: 104 --EDRDVLFIDEIHRLS 118
              +R ++++DEI +++
Sbjct: 173 ERAERGIIYVDEIDKIA 189


>gi|298528707|ref|ZP_07016111.1| ATPase associated with various cellular activities AAA_3
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298512359|gb|EFI36261.1| ATPase associated with various cellular activities AAA_3
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 302

 Score = 39.3 bits (90), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 81/207 (39%), Gaps = 36/207 (17%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR--------- 106
           H+L    PG+GKTTLA  +AR LG++F           GD+   ++  + R         
Sbjct: 39  HLLIQDIPGVGKTTLALSMARTLGLDFARIQMTSDMLPGDVLG-VSMFDPRTNEFCFHPG 97

Query: 107 ----DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTR 162
                ++  DEI+R S   +  L  AM + Q+        SA      L    L+ AT  
Sbjct: 98  PIFHSIVLADEINRSSPRTQSALLEAMAEKQV--------SADGRTYPLPEAFLVIATQN 149

Query: 163 ------VGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL--AVTDE------AA 208
                 V  L N   DRF + I L +      K ++ +GA +      V+ E       +
Sbjct: 150 PLEEHGVNPLPNSQMDRFMMSITLGYPGPGSEKDMLTKGATVPDFEAVVSQEELLSLRQS 209

Query: 209 CEIAMRSRGTPRIAGRLLRRVRDFAEV 235
           C+    S    R+   L    RD AEV
Sbjct: 210 CKDVFLSDEIARMILELTHATRDHAEV 236


>gi|242310371|ref|ZP_04809526.1| ATP-dependent Clp protease ATP-binding subunit clpX 1 [Helicobacter
           pullorum MIT 98-5489]
 gi|239522769|gb|EEQ62635.1| ATP-dependent Clp protease ATP-binding subunit clpX 1 [Helicobacter
           pullorum MIT 98-5489]
          Length = 413

 Score = 39.3 bits (90), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 14/81 (17%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT +AQ +A+ L +         + +AG    D+  +LT L        
Sbjct: 110 NILLIGPTGSGKTLMAQTLAKSLNIPIAICDATSLTEAGYVGEDVENILTRLLQEANGNV 169

Query: 104 --EDRDVLFIDEIHRLSIIVE 122
              ++ ++FIDEI ++S + E
Sbjct: 170 QRAEKGIVFIDEIDKISRLSE 190


>gi|222478623|ref|YP_002564860.1| 26S proteasome subunit P45 family [Halorubrum lacusprofundi ATCC
           49239]
 gi|222451525|gb|ACM55790.1| 26S proteasome subunit P45 family [Halorubrum lacusprofundi ATCC
           49239]
          Length = 405

 Score = 39.3 bits (90), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL-----EDRD-V 108
           VL  GPPG GKT LA+ VA E    F   +G  +     G+ A L+ +L     E++  V
Sbjct: 186 VLLYGPPGTGKTMLAKAVANETDATFIKMAGSELVHKFIGEGAKLVRDLFEVARENQPAV 245

Query: 109 LFIDEI 114
           LFIDEI
Sbjct: 246 LFIDEI 251


>gi|254477070|ref|ZP_05090456.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ruegeria sp.
           R11]
 gi|214031313|gb|EEB72148.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ruegeria sp.
           R11]
          Length = 422

 Score = 39.3 bits (90), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+            
Sbjct: 114 NILLIGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNV 173

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDE+ +++
Sbjct: 174 ERAQRGIVYIDEVDKIT 190


>gi|255944955|ref|XP_002563245.1| Pc20g07200 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211587980|emb|CAP86049.1| Pc20g07200 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 388

 Score = 39.3 bits (90), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 5/66 (7%)

Query: 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
          ++ED+     RP++L++   Q    + L+  ++A+      L H+LF GPPG GKT+   
Sbjct: 27 NKEDSSRLQPRPKSLDDVAAQDHTTNVLQRTLQASN-----LPHMLFYGPPGTGKTSTIL 81

Query: 73 VVAREL 78
           +A+ L
Sbjct: 82 ALAKSL 87


>gi|170727452|ref|YP_001761478.1| ATP-dependent protease ATP-binding subunit ClpX [Shewanella woodyi
           ATCC 51908]
 gi|238688691|sp|B1KLT6|CLPX_SHEWM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|169812799|gb|ACA87383.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella
           woodyi ATCC 51908]
          Length = 426

 Score = 39.3 bits (90), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LA+ +AR L V F       + +AG +   + N+            
Sbjct: 115 NILLIGPTGSGKTLLAETLARFLNVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 174

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 175 EKAQRGIVYIDEIDKIS 191


>gi|153808699|ref|ZP_01961367.1| hypothetical protein BACCAC_02998 [Bacteroides caccae ATCC 43185]
 gi|149128525|gb|EDM19743.1| hypothetical protein BACCAC_02998 [Bacteroides caccae ATCC 43185]
          Length = 324

 Score = 39.3 bits (90), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 77/168 (45%), Gaps = 24/168 (14%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKAGDLAALLTNLEDR-------- 106
           HVL  G PG+ KT LA++ AR +  +F R    P +  +  L   + N++          
Sbjct: 48  HVLIEGVPGVAKTLLARLTARLIDADFSRIQFTPDLMPSDVLGTTVFNMKTNEFDFHKGP 107

Query: 107 ---DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
              D++ +DEI+R     +  L+  ME+ Q+ +   +G + R  ++    +T++A    V
Sbjct: 108 IFADIVLVDEINRAPAKTQSALFEVMEERQISI---DGTTHRMGEL----YTILATQNPV 160

Query: 164 ---GLLTNPLQ--DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDE 206
              G    P    DRF + I +++  +++   I++R      L   D+
Sbjct: 161 EQEGTYKLPEAQLDRFLMKITMDYPSLDEEVNILERHHSNAALVKLDD 208


>gi|260101782|ref|ZP_05752019.1| ATP-dependent Clp protease [Lactobacillus helveticus DSM 20075]
 gi|112148408|gb|ABI13542.1| Clp protease ATP-binding subunit [Lactobacillus helveticus CNRZ32]
 gi|260084426|gb|EEW68546.1| ATP-dependent Clp protease [Lactobacillus helveticus DSM 20075]
 gi|328468550|gb|EGF39552.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus
           helveticus MTCC 5463]
          Length = 424

 Score = 39.3 bits (90), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 14/83 (16%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD--------LAALLTNLE--- 104
           ++  +GP G GKT LAQ +AR L V F       + +AG         L  LL N +   
Sbjct: 111 NIAMIGPTGSGKTYLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDL 170

Query: 105 ---DRDVLFIDEIHRLSIIVEEI 124
               R +++IDEI ++S   E +
Sbjct: 171 ERAQRGIIYIDEIDKISKKSENV 193


>gi|197119016|ref|YP_002139443.1| cell division ATP-dependent zinc protease FtsH [Geobacter
           bemidjiensis Bem]
 gi|197088376|gb|ACH39647.1| cell division ATP-dependent zinc protease FtsH [Geobacter
           bemidjiensis Bem]
          Length = 612

 Score = 39.3 bits (90), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL +GPPG GKT LA+ +A E GV F S SG
Sbjct: 196 VLLMGPPGTGKTLLARAIAGEAGVPFFSISG 226


>gi|145341034|ref|XP_001415621.1| AAA-metalloprotease FtsH, chloroplast precursor [Ostreococcus
           lucimarinus CCE9901]
 gi|144575844|gb|ABO93913.1| AAA-metalloprotease FtsH, chloroplast precursor [Ostreococcus
           lucimarinus CCE9901]
          Length = 632

 Score = 39.3 bits (90), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
            L VGPPG GKT LA+ +A E GV F S SG
Sbjct: 202 CLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 232


>gi|126327417|ref|XP_001367198.1| PREDICTED: similar to Cat eye syndrome chromosome region, candidate
           1 [Monodelphis domestica]
          Length = 490

 Score = 39.3 bits (90), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL VGPPG GKT LA+ VA E G  F + S   +
Sbjct: 244 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTL 277


>gi|146306255|ref|YP_001186720.1| ATP-dependent protease La [Pseudomonas mendocina ymp]
 gi|145574456|gb|ABP83988.1| ATP dependent PIM1 peptidase, Serine peptidase, MEROPS family S16
           [Pseudomonas mendocina ymp]
          Length = 798

 Score = 39.3 bits (90), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 69/166 (41%), Gaps = 40/166 (24%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGP--------------VIAKAGDLAALLT 101
           VL VGPPG+GKT++ + +A  LG  F R + G               + A  G L   L 
Sbjct: 379 VLLVGPPGVGKTSIGKSIAESLGRPFYRFSVGGMRDEAEIKGHRRTYIGAMPGKLVQALK 438

Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPAME----DFQLDLMVGEGPSARSVK 148
             E  + V+ +DEI ++    +        E L P       D  LDL           +
Sbjct: 439 EAEVMNPVIMLDEIDKMGTSYQGDPASALLETLDPEQNVEFLDHYLDL-----------R 487

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           ++LS+   +     +  +  PL DR  + IRL+ Y  E+   I +R
Sbjct: 488 LDLSKVLFVCTANTLDSIPGPLLDRMEV-IRLSGYITEEKLAIAKR 532


>gi|116074349|ref|ZP_01471611.1| ATP-dependent protease ATP-binding subunit [Synechococcus sp.
           RS9916]
 gi|116069654|gb|EAU75406.1| ATP-dependent protease ATP-binding subunit [Synechococcus sp.
           RS9916]
          Length = 451

 Score = 39.3 bits (90), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 4/73 (5%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNLEDRDVLFI 111
           ++L +GP G GKT LAQ +A  L V F       + +AG    D+  +L  L  +  + +
Sbjct: 137 NILLIGPTGCGKTLLAQTLAEMLDVPFAVADATTLTEAGYVGEDVENILLRLLQKADMDV 196

Query: 112 DEIHRLSIIVEEI 124
           D+  R  I ++EI
Sbjct: 197 DQAQRGIIYIDEI 209


>gi|110803598|ref|YP_698702.1| ATP-dependent protease LonB [Clostridium perfringens SM101]
 gi|110684099|gb|ABG87469.1| ATP-dependent protease LonB [Clostridium perfringens SM101]
          Length = 570

 Score = 39.3 bits (90), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 5/55 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           RP  LEE  GQ +    LK  +     +     HV+  GPPG+GKT  A+++  E
Sbjct: 64  RPSNLEEIIGQEKGIKALKAALCGPNPQ-----HVIIYGPPGVGKTAAARIILEE 113


>gi|66954652|dbj|BAD99306.1| FtsH protease [Solanum lycopersicum]
          Length = 672

 Score = 39.3 bits (90), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 7/69 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKAR-------AEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  EA  + +  +E  K         A+     L VGPPG GKT LA+ +A E 
Sbjct: 208 TFDDVAGVNEAKQDFQEIVEFLKTPEKFAAVGAKIPKGFLLVGPPGTGKTLLAKAIAGEA 267

Query: 79  GVNFRSTSG 87
           GV F S SG
Sbjct: 268 GVPFFSLSG 276


>gi|15837791|ref|NP_298479.1| ATP-dependent serine proteinase La [Xylella fastidiosa 9a5c]
 gi|9106159|gb|AAF83999.1|AE003953_3 ATP-dependent serine proteinase La [Xylella fastidiosa 9a5c]
          Length = 848

 Score = 39.3 bits (90), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 84/191 (43%), Gaps = 46/191 (24%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           +  VGPPG+GKT+L Q +A+     F R + G V  +A              G +   L 
Sbjct: 378 LCLVGPPGVGKTSLGQSIAKATNRKFVRMSLGGVRDEAEVRGHRRTYVGSMPGRVVQNLN 437

Query: 102 NLEDRDVLFI-DEIHRL--------SIIVEEILYP----AMEDFQLDLMVGEGPSARSVK 148
            +  ++ LF+ DEI ++        S  + E+L P    A  D  LD           V 
Sbjct: 438 KVGSKNPLFVLDEIDKMAMDFRGDPSAALLEVLDPEQNNAFNDHYLD-----------VD 486

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY-EIEDL----KTIVQRGAKLTGLAV 203
           ++LS    +A +  +  +  PL DR  + IR+  Y E E L    + +V +  +  GLAV
Sbjct: 487 LDLSEVMFVATSNSLN-IPGPLLDRMEV-IRIPGYTEDEKLNIATRYLVPKQIRANGLAV 544

Query: 204 TDEAACEIAMR 214
            + A  E A+R
Sbjct: 545 EELAIGEDAIR 555


>gi|48477659|ref|YP_023365.1| replication factor C small subunit [Picrophilus torridus DSM
          9790]
 gi|50400868|sp|Q6L1I0|RFCS_PICTO RecName: Full=Replication factor C small subunit; Short=RFC small
          subunit; AltName: Full=Clamp loader small subunit
 gi|48430307|gb|AAT43172.1| replication factor C, small subunit [Picrophilus torridus DSM
          9790]
          Length = 318

 Score = 39.3 bits (90), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+ L++  G+ E  + LK F++        L H++F GP G GKT+ A  +  EL
Sbjct: 10 RPKRLDDVIGEDENINTLKSFVKNGD-----LPHLIFAGPAGTGKTSTAIALTIEL 60


>gi|115474007|ref|NP_001060602.1| Os07g0672500 [Oryza sativa Japonica Group]
 gi|33146850|dbj|BAC79845.1| putative MSP1(mitochondrial sorting of proteins) protein [Oryza
           sativa Japonica Group]
 gi|113612138|dbj|BAF22516.1| Os07g0672500 [Oryza sativa Japonica Group]
          Length = 1081

 Score = 39.3 bits (90), Expect = 0.78,   Method: Composition-based stats.
 Identities = 19/35 (54%), Positives = 22/35 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA 91
           +L  GPPG GKT LA+ VA E G NF + S   IA
Sbjct: 817 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSIA 851


>gi|158317028|ref|YP_001509536.1| ATP-dependent protease ATP-binding subunit ClpX [Frankia sp.
           EAN1pec]
 gi|238686843|sp|A8L1X0|CLPX_FRASN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|158112433|gb|ABW14630.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Frankia sp.
           EAN1pec]
          Length = 430

 Score = 39.3 bits (90), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 56/133 (42%), Gaps = 35/133 (26%)

Query: 21  LLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAE----------------ALDHVLF 59
           L +PR + EF      GQ  A   L V +     R +                A  ++L 
Sbjct: 61  LPKPREIYEFLDGYVVGQEAAKKTLSVAVYNHYKRVQAGGASGGDAGKGEVELAKSNILL 120

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---EDRDV---- 108
           +GP G GKT LAQ +AR L V F       + +AG    D+  +L  L    D DV    
Sbjct: 121 LGPTGCGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKKAE 180

Query: 109 ---LFIDEIHRLS 118
              ++IDE+ +++
Sbjct: 181 TGIIYIDEVDKIA 193


>gi|146320684|ref|YP_001200395.1| ATP-dependent protease ATP-binding protein ClpX [Streptococcus suis
           98HAH33]
 gi|223932113|ref|ZP_03624117.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           suis 89/1591]
 gi|253751619|ref|YP_003024760.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus
           suis SC84]
 gi|253753521|ref|YP_003026662.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus
           suis P1/7]
 gi|253755654|ref|YP_003028794.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus
           suis BM407]
 gi|302023732|ref|ZP_07248943.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus suis
           05HAS68]
 gi|330832767|ref|YP_004401592.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus suis
           ST3]
 gi|145691490|gb|ABP91995.1| ATP-dependent protease Clp, ATPase subunit [Streptococcus suis
           98HAH33]
 gi|223899094|gb|EEF65451.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           suis 89/1591]
 gi|251815908|emb|CAZ51522.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus
           suis SC84]
 gi|251818118|emb|CAZ55912.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus
           suis BM407]
 gi|251819767|emb|CAR45665.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus
           suis P1/7]
 gi|292558274|gb|ADE31275.1| ClpX, ATPase regulatory subunit [Streptococcus suis GZ1]
 gi|329306990|gb|AEB81406.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus suis
           ST3]
          Length = 408

 Score = 39.3 bits (90), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +A+ L V F       + +AG    D+  +L  L        
Sbjct: 112 NILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNI 171

Query: 104 --EDRDVLFIDEIHRLS 118
              +R ++++DEI +++
Sbjct: 172 DRAERGIIYVDEIDKIA 188


>gi|330465034|ref|YP_004402777.1| hypothetical protein VAB18032_05255 [Verrucosispora maris AB-18-032]
 gi|328808005|gb|AEB42177.1| hypothetical protein VAB18032_05255 [Verrucosispora maris AB-18-032]
          Length = 1690

 Score = 39.3 bits (90), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 3/66 (4%)

Query: 57   VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHR 116
            +L + PPG GKTTL + VA  LG+ F   +GP +   G     L   E  D     E+ +
Sbjct: 1328 LLLISPPGYGKTTLMEYVASRLGLVFVKVNGPAL---GTKVTSLDPAEAPDATARQEVEK 1384

Query: 117  LSIIVE 122
            +S  +E
Sbjct: 1385 ISFALE 1390


>gi|326429601|gb|EGD75171.1| katanin p60 ATPase-containing subunit A1 [Salpingoeca sp. ATCC
           50818]
          Length = 484

 Score = 39.3 bits (90), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 33/69 (47%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAAL------LTNLEDRDV 108
           VL VGPPG GKT LA+ VA E G  F + S   ++    G+   L      +        
Sbjct: 240 VLMVGPPGTGKTLLAKAVATECGTTFFNVSTSTLSSKYRGESEKLVRLLFEMARFYAPTT 299

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 300 IFIDEIDSL 308


>gi|325125526|gb|ADY84856.1| ATP-dependent protease [Lactobacillus delbrueckii subsp. bulgaricus
           2038]
          Length = 417

 Score = 39.3 bits (90), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD--------LAALLTNLE--- 104
           ++  +GP G GKT LAQ +AR L V F       + +AG         L  LL N +   
Sbjct: 111 NIALIGPTGSGKTYLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDL 170

Query: 105 ---DRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 171 ERAQRGIIYIDEIDKIS 187


>gi|319758057|gb|ADV69999.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus suis
           JS14]
          Length = 408

 Score = 39.3 bits (90), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +A+ L V F       + +AG    D+  +L  L        
Sbjct: 112 NILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNI 171

Query: 104 --EDRDVLFIDEIHRLS 118
              +R ++++DEI +++
Sbjct: 172 DRAERGIIYVDEIDKIA 188


>gi|319745297|gb|EFV97615.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           agalactiae ATCC 13813]
          Length = 416

 Score = 39.3 bits (90), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +A+ L V F       + +AG    D+  +L  L        
Sbjct: 120 NILMIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYNV 179

Query: 104 --EDRDVLFIDEIHRLS 118
              +R ++++DEI +++
Sbjct: 180 ERAERGIIYVDEIDKIA 196


>gi|317120983|ref|YP_004100986.1| membrane protease FtsH catalytic subunit [Thermaerobacter
           marianensis DSM 12885]
 gi|315590963|gb|ADU50259.1| membrane protease FtsH catalytic subunit [Thermaerobacter
           marianensis DSM 12885]
          Length = 615

 Score = 39.3 bits (90), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 30/60 (50%), Gaps = 3/60 (5%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           EE    V+   N + +IE     A     VL  GPPG GKT +A+ VA E GV F   SG
Sbjct: 169 EELKEIVDYLKNPRRYIELG---ARIPKGVLLYGPPGTGKTHMARAVAGEAGVPFYYISG 225


>gi|313772804|gb|EFS38770.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL074PA1]
 gi|313810944|gb|EFS48658.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL083PA1]
 gi|314964587|gb|EFT08687.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL082PA1]
          Length = 717

 Score = 39.3 bits (90), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 203 VLLYGPPGTGKTLLARAVAGEAGVPFFSISG 233


>gi|297852706|ref|XP_002894234.1| hypothetical protein ARALYDRAFT_891942 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297340076|gb|EFH70493.1| hypothetical protein ARALYDRAFT_891942 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1002

 Score = 39.3 bits (90), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           +L  GPPG GKT L + +A E G NF S +G  +     GD   L   L          +
Sbjct: 751 ILLFGPPGTGKTLLTKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFATKLAPVI 810

Query: 109 LFIDEIHRL 117
           +F+DEI  L
Sbjct: 811 IFVDEIDSL 819


>gi|295093765|emb|CBK82856.1| endopeptidase Clp ATP-binding regulatory subunit (clpX)
           [Coprococcus sp. ART55/1]
          Length = 495

 Score = 39.3 bits (90), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L VGP G GKT + + +AR L V    T    + +AG    D+ ++L+ L        
Sbjct: 182 NMLMVGPTGCGKTYIVKTIARLLKVPLAITDATTLTEAGYIGDDVESVLSKLLAAADNDV 241

Query: 104 --EDRDVLFIDEIHRLS 118
              +R ++FIDEI +++
Sbjct: 242 EKAERGIVFIDEIDKIA 258


>gi|304316360|ref|YP_003851505.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302777862|gb|ADL68421.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 424

 Score = 39.3 bits (90), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 66/137 (48%), Gaps = 32/137 (23%)

Query: 14  QEDADIS---LLRPRTLEEF-----TGQVEACSNLKVFI----EAAKARAEALD------ 55
           +E+ D+    L +P+ ++EF      GQ +A   L V +    +   +R ++ D      
Sbjct: 50  EENIDVEIGELPKPKEIKEFLDQYVIGQDKAKKALAVAVYNHYKRINSRVKSDDVELQKS 109

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +AR L V F       + +AG    D+  +L  L        
Sbjct: 110 NILMLGPTGSGKTLLAQTLARMLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDI 169

Query: 104 --EDRDVLFIDEIHRLS 118
              +R +++IDE+ +++
Sbjct: 170 EKAERGIVYIDEVDKIA 186


>gi|294944253|ref|XP_002784163.1| 26S proteosome regulatory subunit, putative [Perkinsus marinus ATCC
           50983]
 gi|239897197|gb|EER15959.1| 26S proteosome regulatory subunit, putative [Perkinsus marinus ATCC
           50983]
          Length = 601

 Score = 39.3 bits (90), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 19/103 (18%)

Query: 21  LLRPRT---LEEFTGQVEACSNLKVFIEA---AKARAEALDHVLFVGPPGLGKTTLAQVV 74
           L RP T   LE+   Q E    L+    +   AK       H++  GPPG GKT  A+ +
Sbjct: 316 LGRPATTNMLEKIVLQQELAERLQWTTNSIINAKKNGTPFRHLMLYGPPGTGKTLFARTL 375

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           AR+ G+++       I   GD+  L  +        +DE++RL
Sbjct: 376 ARQSGLDY------AIMTGGDVGPLGKDA-------VDEMNRL 405


>gi|255076561|ref|XP_002501955.1| microtubule-severing protein katanin 60kDa subunit [Micromonas sp.
           RCC299]
 gi|226517219|gb|ACO63213.1| microtubule-severing protein katanin 60kDa subunit [Micromonas sp.
           RCC299]
          Length = 478

 Score = 39.3 bits (90), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLED------RDV 108
           VL  GPPG GKT LA+ VA E G  F + S   +A    G+   ++  L D         
Sbjct: 223 VLMFGPPGTGKTMLAKAVATECGTTFFNISSSTLASKYRGESERMVRILFDLARHHAPST 282

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 283 IFIDEIDSL 291


>gi|223889283|ref|ZP_03623870.1| cell division protein FtsH [Borrelia burgdorferi 64b]
 gi|223885204|gb|EEF56307.1| cell division protein FtsH [Borrelia burgdorferi 64b]
          Length = 639

 Score = 39.3 bits (90), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 7/69 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ E    L+  +E         K  A+    VL VG PG GKT LA+ VA E 
Sbjct: 170 TFKDVAGQEEVKQELREVVEFLKNPKKFEKIGAKIPKGVLLVGSPGTGKTLLAKAVAGEA 229

Query: 79  GVNFRSTSG 87
           GV+F   SG
Sbjct: 230 GVSFFHMSG 238


>gi|226321254|ref|ZP_03796782.1| cell division protein FtsH [Borrelia burgdorferi Bol26]
 gi|226233286|gb|EEH32037.1| cell division protein FtsH [Borrelia burgdorferi Bol26]
          Length = 639

 Score = 39.3 bits (90), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 7/69 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ E    L+  +E         K  A+    VL VG PG GKT LA+ VA E 
Sbjct: 170 TFKDVAGQEEVKQELREVVEFLKNPKKFEKIGAKIPKGVLLVGSPGTGKTLLAKAVAGEA 229

Query: 79  GVNFRSTSG 87
           GV+F   SG
Sbjct: 230 GVSFFHMSG 238


>gi|163736127|ref|ZP_02143546.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Phaeobacter
           gallaeciensis BS107]
 gi|161389997|gb|EDQ14347.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Phaeobacter
           gallaeciensis BS107]
          Length = 422

 Score = 39.3 bits (90), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+            
Sbjct: 114 NILLIGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNV 173

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDE+ +++
Sbjct: 174 ERAQRGIVYIDEVDKIT 190


>gi|156401368|ref|XP_001639263.1| predicted protein [Nematostella vectensis]
 gi|156226390|gb|EDO47200.1| predicted protein [Nematostella vectensis]
          Length = 484

 Score = 39.3 bits (90), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL VGPPG GKT LA+ VA E G  F + S   +
Sbjct: 239 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTL 272


>gi|146317677|ref|YP_001197389.1| ATP-dependent Zn protease [Streptococcus suis 05ZYH33]
 gi|146319867|ref|YP_001199578.1| ATP-dependent Zn protease [Streptococcus suis 98HAH33]
 gi|253750938|ref|YP_003024079.1| cell division protease FtsH [Streptococcus suis SC84]
 gi|253752837|ref|YP_003025977.1| cell division protease FtsH [Streptococcus suis P1/7]
 gi|253754662|ref|YP_003027802.1| cell division protease FtsH [Streptococcus suis BM407]
 gi|145688483|gb|ABP88989.1| ATP-dependent Zn protease [Streptococcus suis 05ZYH33]
 gi|145690673|gb|ABP91178.1| ATP-dependent Zn protease [Streptococcus suis 98HAH33]
 gi|251815227|emb|CAZ50791.1| putative cell division protease FtsH [Streptococcus suis SC84]
 gi|251817126|emb|CAZ54847.1| putative cell division protease FtsH [Streptococcus suis BM407]
 gi|251819082|emb|CAR44108.1| putative cell division protease FtsH [Streptococcus suis P1/7]
 gi|292557479|gb|ADE30480.1| Peptidase M41, FtsH [Streptococcus suis GZ1]
 gi|319757187|gb|ADV69129.1| ATP-dependent Zn protease [Streptococcus suis JS14]
          Length = 657

 Score = 39.3 bits (90), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 225 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISG 255


>gi|119598577|gb|EAW78171.1| replication factor C (activator 1) 4, 37kDa, isoform CRA_b [Homo
          sapiens]
 gi|194386378|dbj|BAG59753.1| unnamed protein product [Homo sapiens]
          Length = 303

 Score = 39.3 bits (90), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+ ++E   Q E  + LK  +E A      L ++LF GPPG GKT+     AREL
Sbjct: 45 RPKCVDEVAFQEEVVAVLKKSLEGAD-----LPNLLFYGPPGTGKTSTILAAAREL 95


>gi|118463779|ref|YP_879822.1| ATP-dependent metallopeptidase HflB [Mycobacterium avium 104]
 gi|118165066|gb|ABK65963.1| ATP-dependent metallopeptidase HflB [Mycobacterium avium 104]
          Length = 799

 Score = 39.3 bits (90), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 14/94 (14%)

Query: 34  VEACSNLKVFIEAAKARAEAL-----DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VE    +K F++    R +AL       VL  GPPG GKT LA+ VA E GV F + SG 
Sbjct: 172 VEELYEIKDFLQNP-GRYQALGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGS 230

Query: 89  VIAK--AGDLAALLTNLEDRD------VLFIDEI 114
              +   G  A+ + +L D+       ++F+DEI
Sbjct: 231 DFVEMFVGVGASRVRDLFDQAKQNNPCIIFVDEI 264


>gi|110798596|ref|YP_696086.1| ATP-dependent protease LonB [Clostridium perfringens ATCC 13124]
 gi|168207808|ref|ZP_02633813.1| ATP-dependent protease LonB [Clostridium perfringens E str.
           JGS1987]
 gi|168212104|ref|ZP_02637729.1| ATP-dependent protease LonB [Clostridium perfringens B str. ATCC
           3626]
 gi|110673243|gb|ABG82230.1| ATP-dependent protease LonB [Clostridium perfringens ATCC 13124]
 gi|170660860|gb|EDT13543.1| ATP-dependent protease LonB [Clostridium perfringens E str.
           JGS1987]
 gi|170709988|gb|EDT22170.1| ATP-dependent protease LonB [Clostridium perfringens B str. ATCC
           3626]
          Length = 570

 Score = 39.3 bits (90), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 5/55 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           RP  LEE  GQ +    LK  +     +     HV+  GPPG+GKT  A+++  E
Sbjct: 64  RPSNLEEIIGQEKGIKALKAALCGPNPQ-----HVIIYGPPGVGKTAAARIILEE 113


>gi|110598266|ref|ZP_01386541.1| ATP-dependent metalloprotease FtsH [Chlorobium ferrooxidans DSM
           13031]
 gi|110340074|gb|EAT58574.1| ATP-dependent metalloprotease FtsH [Chlorobium ferrooxidans DSM
           13031]
          Length = 701

 Score = 39.3 bits (90), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E  V F S SG       V   A  +  L    +++   +
Sbjct: 232 VLLVGPPGTGKTLLAKAVAGEADVPFFSISGSDFVEMFVGVGAARVRDLFKQAKEKAPCI 291

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 292 IFIDEI 297


>gi|73987070|ref|XP_868436.1| PREDICTED: similar to Lon protease homolog, mitochondrial precursor
           (Lon protease-like protein) (LONP) (LONHs) isoform 2
           [Canis familiaris]
          Length = 898

 Score = 39.3 bits (90), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 87/207 (42%), Gaps = 33/207 (15%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLA 71
           S E+ D++  +    E+  G  +    +  FI  ++ R      +L F GPPG+GKT++A
Sbjct: 413 SNENLDLARAQAVLEEDHYGMEDVKKRILEFIAVSQLRGSTQGKILCFYGPPGVGKTSIA 472

Query: 72  QVVARELGVN-FRSTSGP--------------VIAKAGDLAALLTNLEDRD-VLFIDEIH 115
           + +AR L    FR + G               V A  G +   L   +  + ++ IDE+ 
Sbjct: 473 RSIARALNREYFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLILIDEVD 532

Query: 116 RL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           ++        S  + E+L P      LD  +        V ++LS+   I        + 
Sbjct: 533 KIGRGYQGDPSSALLELLDPEQNANFLDHYL-------DVPVDLSKVLFICTANVTETIP 585

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQR 194
            PL+DR  + I ++ Y  ++   I +R
Sbjct: 586 EPLRDRMEM-INVSGYVAQEKLAIAER 611


>gi|41406546|ref|NP_959382.1| hypothetical protein MAP0448 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41394895|gb|AAS02765.1| FtsH [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 799

 Score = 39.3 bits (90), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 14/94 (14%)

Query: 34  VEACSNLKVFIEAAKARAEAL-----DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VE    +K F++    R +AL       VL  GPPG GKT LA+ VA E GV F + SG 
Sbjct: 172 VEELYEIKDFLQNP-GRYQALGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGS 230

Query: 89  VIAK--AGDLAALLTNLEDRD------VLFIDEI 114
              +   G  A+ + +L D+       ++F+DEI
Sbjct: 231 DFVEMFVGVGASRVRDLFDQAKQNNPCIIFVDEI 264


>gi|33152553|ref|NP_873906.1| cell division protein, FtsH [Haemophilus ducreyi 35000HP]
 gi|33148777|gb|AAP96295.1| cell division protein, FtsH [Haemophilus ducreyi 35000HP]
          Length = 639

 Score = 39.3 bits (90), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           +L VGPPG GKT LA+ +A E GV F + +G    +   G  A+ + +L D+       +
Sbjct: 189 ILMVGPPGTGKTLLAKAIAGEAGVPFFTMAGSDFVEMFVGVGASRVRDLFDQAKKNAPCI 248

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 249 IFIDEI 254


>gi|15595134|ref|NP_212923.1| cell division protein (ftsH) [Borrelia burgdorferi B31]
 gi|195942000|ref|ZP_03087382.1| cell division protein (ftsH) [Borrelia burgdorferi 80a]
 gi|216264644|ref|ZP_03436636.1| cell division protein FtsH [Borrelia burgdorferi 156a]
 gi|218249315|ref|YP_002375288.1| cell division protein FtsH [Borrelia burgdorferi ZS7]
 gi|221217602|ref|ZP_03589071.1| cell division protein FtsH [Borrelia burgdorferi 72a]
 gi|224533427|ref|ZP_03674020.1| cell division protein FtsH [Borrelia burgdorferi CA-11.2a]
 gi|225549393|ref|ZP_03770365.1| cell division protein FtsH [Borrelia burgdorferi 94a]
 gi|225550274|ref|ZP_03771233.1| cell division protein FtsH [Borrelia burgdorferi 118a]
 gi|226321220|ref|ZP_03796754.1| cell division protein FtsH [Borrelia burgdorferi 29805]
 gi|310943120|sp|B7J0N5|FTSH_BORBZ RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|2688712|gb|AAC67120.1| cell division protein (ftsH) [Borrelia burgdorferi B31]
 gi|215981117|gb|EEC21924.1| cell division protein FtsH [Borrelia burgdorferi 156a]
 gi|218164503|gb|ACK74564.1| cell division protein FtsH [Borrelia burgdorferi ZS7]
 gi|221192548|gb|EEE18766.1| cell division protein FtsH [Borrelia burgdorferi 72a]
 gi|224513389|gb|EEF83747.1| cell division protein FtsH [Borrelia burgdorferi CA-11.2a]
 gi|225369142|gb|EEG98596.1| cell division protein FtsH [Borrelia burgdorferi 118a]
 gi|225370021|gb|EEG99462.1| cell division protein FtsH [Borrelia burgdorferi 94a]
 gi|226233374|gb|EEH32121.1| cell division protein FtsH [Borrelia burgdorferi 29805]
 gi|312148114|gb|ADQ30773.1| cell division protein FtsH [Borrelia burgdorferi JD1]
          Length = 639

 Score = 39.3 bits (90), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 7/69 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ E    L+  +E         K  A+    VL VG PG GKT LA+ VA E 
Sbjct: 170 TFKDVAGQEEVKQELREVVEFLKNPKKFEKIGAKIPKGVLLVGSPGTGKTLLAKAVAGEA 229

Query: 79  GVNFRSTSG 87
           GV+F   SG
Sbjct: 230 GVSFFHMSG 238


>gi|46577697|sp|P70730|CLPX_AZOBR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|5002358|gb|AAD37436.1|AF150957_3 heat-shock protein ClpX [Azospirillum brasilense]
          Length = 422

 Score = 39.3 bits (90), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
           A  ++L VGP G GKT LAQ +AR + V F       + +AG +   + N+         
Sbjct: 110 AKSNILLVGPTGCGKTLLAQTLARIIDVPFTMADATTLTEAGYVREDVENIILKLLQAAR 169

Query: 104 -----EDRDVLFIDEIHRLS 118
                  R +++IDE+ ++S
Sbjct: 170 LQRRAAQRGIVYIDEVDKIS 189


>gi|15674910|ref|NP_269084.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           pyogenes M1 GAS]
 gi|19745953|ref|NP_607089.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           pyogenes MGAS8232]
 gi|21910140|ref|NP_664408.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           pyogenes MGAS315]
 gi|28896161|ref|NP_802511.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           pyogenes SSI-1]
 gi|71903336|ref|YP_280139.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           pyogenes MGAS6180]
 gi|71910504|ref|YP_282054.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           pyogenes MGAS5005]
 gi|94990258|ref|YP_598358.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           pyogenes MGAS10270]
 gi|94994179|ref|YP_602277.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           pyogenes MGAS10750]
 gi|306827518|ref|ZP_07460801.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           pyogenes ATCC 10782]
 gi|54036858|sp|P63794|CLPX_STRP3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|54036859|sp|P63795|CLPX_STRP8 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|54040896|sp|P63793|CLPX_STRP1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|123640038|sp|Q48U22|CLPX_STRPM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|166215212|sp|Q1JHC2|CLPX_STRPD RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|166215213|sp|Q1J741|CLPX_STRPF RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|13622051|gb|AAK33805.1| putative ATP-dependent Clp protease subunit X [Streptococcus
           pyogenes M1 GAS]
 gi|19748112|gb|AAL97588.1| putative ATP-dependent Clp protease subunit X [Streptococcus
           pyogenes MGAS8232]
 gi|21904333|gb|AAM79211.1| putative ATP-dependent Clp protease subunit X [Streptococcus
           pyogenes MGAS315]
 gi|28811411|dbj|BAC64344.1| putative ATP-dependent Clp protease subunit X [Streptococcus
           pyogenes SSI-1]
 gi|71802431|gb|AAX71784.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           pyogenes MGAS6180]
 gi|71853286|gb|AAZ51309.1| ATP-dependent clp protease ATP-binding subunit [Streptococcus
           pyogenes MGAS5005]
 gi|94543766|gb|ABF33814.1| ATP-dependent endopeptidase clp ATP-binding subunit clpX
           [Streptococcus pyogenes MGAS10270]
 gi|94547687|gb|ABF37733.1| ATP-dependent endopeptidase clp ATP-binding subunit clpX
           [Streptococcus pyogenes MGAS10750]
 gi|304430316|gb|EFM33342.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           pyogenes ATCC 10782]
          Length = 409

 Score = 39.3 bits (90), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +A+ L V F       + +AG    D+  +L  L        
Sbjct: 113 NILMIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYNV 172

Query: 104 --EDRDVLFIDEIHRLS 118
              +R ++++DEI +++
Sbjct: 173 ERAERGIIYVDEIDKIA 189


>gi|25029098|ref|NP_739152.1| putative cell division protein FtsH [Corynebacterium efficiens
           YS-314]
 gi|23494385|dbj|BAC19352.1| putative cell division protein FtsH [Corynebacterium efficiens
           YS-314]
          Length = 812

 Score = 39.3 bits (90), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL  GPPG GKT LA+ VA E GV F S SG       V   A  +  L    ++    +
Sbjct: 203 VLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFKQAKENSPCI 262

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 263 IFIDEI 268


>gi|116513869|ref|YP_812775.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
 gi|116093184|gb|ABJ58337.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
          Length = 417

 Score = 39.3 bits (90), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD--------LAALLTNLE--- 104
           ++  +GP G GKT LAQ +AR L V F       + +AG         L  LL N +   
Sbjct: 111 NIALIGPTGSGKTYLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDL 170

Query: 105 ---DRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 171 ERAQRGIIYIDEIDKIS 187


>gi|330443930|ref|YP_004376916.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Chlamydophila
           pecorum E58]
 gi|328807040|gb|AEB41213.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Chlamydophila
           pecorum E58]
          Length = 422

 Score = 39.3 bits (90), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 58/138 (42%), Gaps = 29/138 (21%)

Query: 9   SRNVSQEDADISLLRPRTL-----EEFTGQVEACSNLKVFIEAAKARAEALDH------- 56
           S+    +  D+ +L P+ +     E   GQ  A   + V +     R  AL H       
Sbjct: 56  SQETPSQHVDLRVLTPKEIKKHIDEYVVGQERAKKTIAVAVYNHYKRIRALLHNKHVSYG 115

Query: 57  ---VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL---------- 103
              VL +GP G GKT +A+ +A+ L V F       + +AG +   + N+          
Sbjct: 116 KSNVLLLGPTGSGKTLIAKTLAKILDVPFTIADATTLTEAGYVGEDVENIVLRLLQSADY 175

Query: 104 ----EDRDVLFIDEIHRL 117
                +R +++IDEI ++
Sbjct: 176 DVSRAERGIIYIDEIDKI 193


>gi|327334838|gb|EGE76549.1| putative cell division protein [Propionibacterium acnes HL097PA1]
          Length = 711

 Score = 39.3 bits (90), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 203 VLLYGPPGTGKTLLARAVAGEAGVPFFSISG 233


>gi|318043032|ref|ZP_07974988.1| ATP-dependent protease ATP-binding subunit ClpX [Synechococcus sp.
           CB0101]
          Length = 450

 Score = 39.3 bits (90), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 4/73 (5%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNLEDRDVLFI 111
           ++L +GP G GKT LAQ +A  L V F       + +AG    D+  +L  L  +  L +
Sbjct: 136 NILLIGPTGCGKTLLAQTLAELLDVPFAVADATTLTEAGYVGEDVENILLRLLQKADLDV 195

Query: 112 DEIHRLSIIVEEI 124
           D+  R  I ++EI
Sbjct: 196 DQAQRGIIYIDEI 208


>gi|315104914|gb|EFT76890.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL050PA2]
          Length = 717

 Score = 39.3 bits (90), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 203 VLLYGPPGTGKTLLARAVAGEAGVPFFSISG 233


>gi|315082721|gb|EFT54697.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL027PA2]
          Length = 717

 Score = 39.3 bits (90), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 203 VLLYGPPGTGKTLLARAVAGEAGVPFFSISG 233


>gi|313902545|ref|ZP_07835946.1| membrane protease FtsH catalytic subunit [Thermaerobacter
           subterraneus DSM 13965]
 gi|313467231|gb|EFR62744.1| membrane protease FtsH catalytic subunit [Thermaerobacter
           subterraneus DSM 13965]
          Length = 614

 Score = 39.3 bits (90), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 30/60 (50%), Gaps = 3/60 (5%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           EE    V+   N + +IE     A     VL  GPPG GKT +A+ VA E GV F   SG
Sbjct: 169 EELKEIVDYLKNPRRYIELG---ARIPKGVLLYGPPGTGKTHMARAVAGEAGVPFYYISG 225


>gi|326783112|ref|YP_004323509.1| clamp loader subunit [Prochlorococcus phage P-HM2]
 gi|310005530|gb|ADO99918.1| clamp loader subunit [Prochlorococcus phage P-HM2]
          Length = 313

 Score = 39.3 bits (90), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 15/121 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+ +E      +     K F++A +     + ++L  G  G+GKTT+A+ +  ELGV+ 
Sbjct: 11  RPKNIEHCILPDDLKKTFKSFVDAGE-----VPNLLLCGTAGIGKTTVAKALCHELGVDS 65

Query: 83  RSTSGP--------VIAKAGDLAAL--LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
              +G         V   A   A+   LT+     V+ IDE    +  V+ +L  ++E+F
Sbjct: 66  IVINGSDEGRFLDTVRNNAKQFASTVSLTSSAKHKVIIIDEADNTTHDVQLLLRASIEEF 125

Query: 133 Q 133
           Q
Sbjct: 126 Q 126


>gi|317575745|ref|NP_001187540.1| replication factor C subunit 4 [Ictalurus punctatus]
 gi|308323307|gb|ADO28790.1| replication factor c subunit 4 [Ictalurus punctatus]
          Length = 358

 Score = 39.3 bits (90), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+ ++E   Q E  + LK  +E A      L ++LF GPPG GKT+     AREL
Sbjct: 40 RPKCVDEVAFQEEVVAVLKKSLEGAD-----LPNLLFYGPPGTGKTSTILAAAREL 90


>gi|307705919|ref|ZP_07642757.1| ATP-dependent metallopeptidase HflB [Streptococcus mitis SK597]
 gi|307620580|gb|EFN99678.1| ATP-dependent metallopeptidase HflB [Streptococcus mitis SK597]
          Length = 652

 Score = 39.3 bits (90), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 223 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISG 253


>gi|282859211|ref|ZP_06268333.1| DNA polymerase III, subunit gamma and tau [Prevotella bivia
          JCVIHMP010]
 gi|282588030|gb|EFB93213.1| DNA polymerase III, subunit gamma and tau [Prevotella bivia
          JCVIHMP010]
          Length = 595

 Score = 39.3 bits (90), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 6/78 (7%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
          RP T +   GQ    + LK  +++ K     L H  LF GP G+GKTT A++ A+ +   
Sbjct: 12 RPATFDSVVGQAALTTTLKNAVKSGK-----LAHAYLFCGPRGVGKTTTARIFAKAINCE 66

Query: 82 FRSTSGPVIAKAGDLAAL 99
            ++ G    +     A 
Sbjct: 67 HPTSEGEACNECESCKAF 84


>gi|261749484|ref|YP_003257170.1| AAA-metalloprotease FtsH [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
 gi|261497577|gb|ACX84027.1| AAA-metalloprotease FtsH [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
          Length = 653

 Score = 39.3 bits (90), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 34/65 (52%), Gaps = 8/65 (12%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VL 109
           L +GPPG GKT LA+ VA E  V F S SG       V   A  +  L    +D+   ++
Sbjct: 233 LLIGPPGTGKTLLAKAVAGEAKVPFFSLSGSDFVEMFVGVGASRVRDLFEKAKDKSPCII 292

Query: 110 FIDEI 114
           FIDEI
Sbjct: 293 FIDEI 297


>gi|238917787|ref|YP_002931304.1| microtubule-severing ATPase [Eubacterium eligens ATCC 27750]
 gi|238873147|gb|ACR72857.1| microtubule-severing ATPase [Eubacterium eligens ATCC 27750]
          Length = 622

 Score = 39.3 bits (90), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           V+  GPPG GKT LA+ VA E GV F S SG
Sbjct: 200 VILTGPPGTGKTLLAKAVAGEAGVPFFSISG 230


>gi|291294612|ref|YP_003506010.1| ATP-dependent metalloprotease FtsH [Meiothermus ruber DSM 1279]
 gi|290469571|gb|ADD26990.1| ATP-dependent metalloprotease FtsH [Meiothermus ruber DSM 1279]
          Length = 626

 Score = 39.3 bits (90), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 37/72 (51%), Gaps = 8/72 (11%)

Query: 24  PRT-LEEFTGQVEACSNLKVFIEAAKARAEALDH-------VLFVGPPGLGKTTLAQVVA 75
           P+T  ++  G  EA   LK  +E  KA A   +        VL VGPPG GKT +A+ VA
Sbjct: 149 PKTSFKDVAGCEEAKEELKEIVEFLKAPARFHEMGARIPKGVLLVGPPGSGKTHIARAVA 208

Query: 76  RELGVNFRSTSG 87
            E  V F + SG
Sbjct: 209 GEAKVPFIAASG 220


>gi|225561830|gb|EEH10110.1| lon protease Lon1 2 [Ajellomyces capsulatus G186AR]
          Length = 928

 Score = 39.3 bits (90), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 68/163 (41%), Gaps = 33/163 (20%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTS-GPVIAKA----------GDLAALLTNLED 105
           +L VGPPG GKT+LA+ VA  LG  F   S G V  +A            +  L+ N   
Sbjct: 479 MLLVGPPGTGKTSLAKSVATALGRKFHRISLGGVRDEAEIRGHRRTYVAAMPGLIVNGLK 538

Query: 106 R-----DVLFIDEIHRL---------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINL 151
           +      V  +DEI ++         S  + E+L P       D  +       ++ I+L
Sbjct: 539 KVGVANPVFLLDEIDKVVGSNFHGDPSAAMLEVLDPEQNHSFTDHYI-------NIPIDL 591

Query: 152 SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           S+   IA    +  +  PL DR    I+L+ Y   + K I  R
Sbjct: 592 SKVLFIATANSLDTIPPPLLDRMET-IQLSGYTTVEKKHIASR 633


>gi|238584921|ref|XP_002390711.1| hypothetical protein MPER_09971 [Moniliophthora perniciosa FA553]
 gi|215454443|gb|EEB91641.1| hypothetical protein MPER_09971 [Moniliophthora perniciosa FA553]
          Length = 502

 Score = 39.3 bits (90), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 4/48 (8%)

Query: 41  KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           ++F +  K R+     +L  GPPG GKT +A+ VA    +NF S  GP
Sbjct: 366 ELFADGLKKRS----GILLYGPPGTGKTLIAKAVATSFSLNFFSVKGP 409


>gi|237837369|ref|XP_002367982.1| ATPase, AAA family domain-containing protein [Toxoplasma gondii ME49]
 gi|211965646|gb|EEB00842.1| ATPase, AAA family domain-containing protein [Toxoplasma gondii ME49]
 gi|221509256|gb|EEE34825.1| spermatogenesis associated factor, putative [Toxoplasma gondii VEG]
          Length = 1288

 Score = 39.3 bits (90), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 8/69 (11%)

Query: 57   VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDR------DV 108
            +L  GPPG GKT LA+ +A     NF +  GP +++K  GD  A L  L  R       +
Sbjct: 982  ILLYGPPGCGKTFLAKALANACQANFIAVKGPELLSKYVGDSEAALRRLFSRASFFSPSL 1041

Query: 109  LFIDEIHRL 117
            +F DEI  L
Sbjct: 1042 IFFDEIDAL 1050


>gi|209736064|gb|ACI68901.1| Replication factor C subunit 2 [Salmo salar]
          Length = 153

 Score = 39.3 bits (90), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 5/60 (8%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          +   RP  L E  G  E  S L+VF     AR   + +++  GPPG GKTT    +AR L
Sbjct: 38 VEKYRPLKLNEIVGNEETVSRLEVF-----AREGNVPNIIIAGPPGTGKTTSILCLARAL 92


>gi|168215327|ref|ZP_02640952.1| ATP-dependent protease LonB [Clostridium perfringens CPE str.
           F4969]
 gi|170713284|gb|EDT25466.1| ATP-dependent protease LonB [Clostridium perfringens CPE str.
           F4969]
          Length = 570

 Score = 39.3 bits (90), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 5/55 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           RP  LEE  GQ +    LK  +     +     HV+  GPPG+GKT  A+++  E
Sbjct: 64  RPSNLEEIIGQEKGIKALKAALCGPNPQ-----HVIIYGPPGVGKTAAARIILEE 113


>gi|164657456|ref|XP_001729854.1| hypothetical protein MGL_2840 [Malassezia globosa CBS 7966]
 gi|159103748|gb|EDP42640.1| hypothetical protein MGL_2840 [Malassezia globosa CBS 7966]
          Length = 758

 Score = 39.3 bits (90), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL------EDRDV 108
           VL  GPPG GKT+LA+ VA  L  + ++ +GP ++    G+  + L ++        R +
Sbjct: 246 VLLYGPPGTGKTSLARTVALSLQAHVQTINGPELSSVYHGETESKLRSIFENAASHKRSI 305

Query: 109 LFIDEIHRLS 118
           + +DEI  L+
Sbjct: 306 IILDEIDALA 315



 Score = 38.1 bits (87), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 20/31 (64%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           L  GPPG  KT  A+ +ARE G+NF +  GP
Sbjct: 531 LLYGPPGCSKTLTAKALARESGLNFLAVRGP 561


>gi|156937486|ref|YP_001435282.1| ATPase AAA [Ignicoccus hospitalis KIN4/I]
 gi|156566470|gb|ABU81875.1| AAA family ATPase, CDC48 subfamily [Ignicoccus hospitalis KIN4/I]
          Length = 734

 Score = 39.3 bits (90), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 8/76 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DV 108
           VL  GPPG GKT LA+ +A E+  +F   +GP I     G+    L  + +        +
Sbjct: 222 VLLFGPPGTGKTMLAKALANEIDAHFIPINGPEIMSKYYGESEQRLREIFEEARKNAPSI 281

Query: 109 LFIDEIHRLSIIVEEI 124
           +FIDEI  ++   EE+
Sbjct: 282 IFIDEIDAIAPKREEV 297



 Score = 37.4 bits (85), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 31/71 (43%), Gaps = 8/71 (11%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARELG 79
           E+  G  EA   L+  +E      EA           +L  GPPG GKT LA+  A E  
Sbjct: 458 EDVGGLKEAKQQLREAVEWPLKYPEAFRRLGIEPPKGILLFGPPGTGKTLLAKAAATESQ 517

Query: 80  VNFRSTSGPVI 90
            NF +  GP I
Sbjct: 518 ANFIAVRGPEI 528


>gi|139473950|ref|YP_001128666.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           pyogenes str. Manfredo]
 gi|166215214|sp|A2RF17|CLPX_STRPG RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|134272197|emb|CAM30443.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus
           pyogenes str. Manfredo]
          Length = 409

 Score = 39.3 bits (90), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +A+ L V F       + +AG    D+  +L  L        
Sbjct: 113 NILMIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYNV 172

Query: 104 --EDRDVLFIDEIHRLS 118
              +R ++++DEI +++
Sbjct: 173 ERAERGIIYVDEIDKIA 189


>gi|118411032|ref|YP_874427.1| cell division protein FtsH-like protein [Phaeodactylum tricornutum]
 gi|116739779|gb|ABK20650.1| cell division protein FtsH-like protein [Phaeodactylum tricornutum]
          Length = 624

 Score = 39.3 bits (90), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E  V F S +G
Sbjct: 216 VLLVGPPGTGKTLLAKAIANEANVPFYSVAG 246


>gi|104773862|ref|YP_618842.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
 gi|103422943|emb|CAI97605.1| ATP-dependent Clp protease ATP-binding subunit clpX [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
          Length = 417

 Score = 39.3 bits (90), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD--------LAALLTNLE--- 104
           ++  +GP G GKT LAQ +AR L V F       + +AG         L  LL N +   
Sbjct: 111 NIALIGPTGSGKTYLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDL 170

Query: 105 ---DRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 171 ERAQRGIIYIDEIDKIS 187


>gi|30583901|gb|AAP36199.1| Homo sapiens proteasome (prosome, macropain) 26S subunit, ATPase, 6
           [synthetic construct]
 gi|60653563|gb|AAX29475.1| proteasome 26S subunit 6 [synthetic construct]
          Length = 390

 Score = 39.3 bits (90), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 56/124 (45%), Gaps = 23/124 (18%)

Query: 8   LSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV--------L 58
           L  N+S ED  ++S        E  G  E    L+  IE      E    V        L
Sbjct: 118 LVYNMSHEDPGNVSY------SEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCL 171

Query: 59  FVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA-GDLAALLTNLED--RD----VLF 110
             GPPG GKT LA+ VA +L  NF +  S  ++ K  G+ A L+  + +  RD    ++F
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIF 231

Query: 111 IDEI 114
           +DEI
Sbjct: 232 MDEI 235


>gi|73993476|ref|XP_543146.2| PREDICTED: similar to katanin p60 subunit A-like 1 [Canis
           familiaris]
          Length = 490

 Score = 39.3 bits (90), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL VGPPG GKT LA+ VA E G  F + S   +
Sbjct: 244 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTL 277


>gi|57238934|ref|YP_180070.1| ATP-dependent protease ATP-binding subunit ClpX [Ehrlichia
           ruminantium str. Welgevonden]
 gi|58578867|ref|YP_197079.1| ATP-dependent protease ATP-binding subunit [Ehrlichia ruminantium
           str. Welgevonden]
 gi|58616925|ref|YP_196124.1| ATP-dependent protease ATP-binding subunit [Ehrlichia ruminantium
           str. Gardel]
 gi|75356618|sp|Q5FFG6|CLPX_EHRRG RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|81353017|sp|Q5HBX4|CLPX_EHRRW RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|57161013|emb|CAH57919.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Ehrlichia
           ruminantium str. Welgevonden]
 gi|58416537|emb|CAI27650.1| ATP-dependent clp protease ATP-binding subunit ClpX [Ehrlichia
           ruminantium str. Gardel]
 gi|58417493|emb|CAI26697.1| ATP-dependent clp protease ATP-binding subunit ClpX [Ehrlichia
           ruminantium str. Welgevonden]
          Length = 406

 Score = 39.3 bits (90), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           +VL +GP G GKT LA+ +AR L V F       + +AG    D+ ++L  L        
Sbjct: 108 NVLLIGPTGSGKTLLARTLARVLQVPFAMADATTLTEAGYVGEDVESILLKLLQAANFNV 167

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDE+ ++S
Sbjct: 168 EAAQRGIIYIDEVDKIS 184


>gi|18310373|ref|NP_562307.1| Lon-like ATP-dependent protease [Clostridium perfringens str. 13]
 gi|18145053|dbj|BAB81097.1| Lon-like ATP-dependent protease [Clostridium perfringens str. 13]
          Length = 570

 Score = 39.3 bits (90), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 5/55 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           RP  LEE  GQ +    LK  +     +     HV+  GPPG+GKT  A+++  E
Sbjct: 64  RPSNLEEIIGQEKGIKALKAALCGPNPQ-----HVIIYGPPGVGKTAAARIILEE 113


>gi|22298071|ref|NP_681318.1| cell division protein [Thermosynechococcus elongatus BP-1]
 gi|22294249|dbj|BAC08080.1| cell division protein [Thermosynechococcus elongatus BP-1]
          Length = 619

 Score = 39.3 bits (90), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E  V F S SG
Sbjct: 205 VLLVGPPGTGKTLLAKAVAGEANVPFFSISG 235


>gi|84515417|ref|ZP_01002779.1| ATP-dependent protease ATP-binding subunit [Loktanella
           vestfoldensis SKA53]
 gi|84510700|gb|EAQ07155.1| ATP-dependent protease ATP-binding subunit [Loktanella
           vestfoldensis SKA53]
          Length = 421

 Score = 39.3 bits (90), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 23/110 (20%)

Query: 32  GQVEACSNLKVFIEAAKARAEALD---------HVLFVGPPGLGKTTLAQVVARELGVNF 82
           GQV A   L V +     R    D         +++ +GP G GKT LAQ +AR L V F
Sbjct: 79  GQVHAKRVLSVAVHNHYKRLNHADKSDIELAKSNIMLIGPTGCGKTLLAQTLARILDVPF 138

Query: 83  RSTSGPVIAKAGDLAALLTNL--------------EDRDVLFIDEIHRLS 118
                  + +AG +   + N+                R +++IDE+ +++
Sbjct: 139 TMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQRGIVYIDEVDKIT 188


>gi|56808899|ref|ZP_00366608.1| COG1219: ATP-dependent protease Clp, ATPase subunit [Streptococcus
           pyogenes M49 591]
 gi|209559238|ref|YP_002285710.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           pyogenes NZ131]
 gi|238066660|sp|B5XL03|CLPX_STRPZ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|209540439|gb|ACI61015.1| ATP-dependent Clp protease ATP-binding subunit clpX [Streptococcus
           pyogenes NZ131]
          Length = 409

 Score = 39.3 bits (90), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +A+ L V F       + +AG    D+  +L  L        
Sbjct: 113 NILMIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYNV 172

Query: 104 --EDRDVLFIDEIHRLS 118
              +R ++++DEI +++
Sbjct: 173 ERAERGIIYVDEIDKIA 189


>gi|332242206|ref|XP_003270277.1| PREDICTED: katanin p60 ATPase-containing subunit A-like 1 isoform 1
           [Nomascus leucogenys]
 gi|332242208|ref|XP_003270278.1| PREDICTED: katanin p60 ATPase-containing subunit A-like 1 isoform 2
           [Nomascus leucogenys]
          Length = 490

 Score = 39.3 bits (90), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL VGPPG GKT LA+ VA E G  F + S   +
Sbjct: 244 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTL 277


>gi|330850841|ref|YP_004376591.1| cell division protein FtsH-like protein [Fistulifera sp. JPCC
           DA0580]
 gi|328835661|dbj|BAK18957.1| cell division protein FtsH-like protein [Fistulifera sp. JPCC
           DA0580]
          Length = 626

 Score = 39.3 bits (90), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VL VGPPG GKT LA+ +A E  V F S +G    +   G  AA + +L  +       +
Sbjct: 218 VLLVGPPGTGKTLLAKAIANEANVPFYSVAGSEFVEMFIGIGAARIRDLFKKASENTPCI 277

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 278 VFIDEI 283


>gi|325124453|gb|ADY83976.1| ATP-dependent protease ATP-binding subunit [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 437

 Score = 39.3 bits (90), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------ED 105
           A  ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+        D
Sbjct: 110 AKSNILLIGPTGSGKTLLAQTLARLLDVPFAMADATTLTEAGYVGEDVENIVQKLLQKAD 169

Query: 106 RDV-------LFIDEIHRLS 118
            DV       ++IDEI +++
Sbjct: 170 YDVEKAQKGIIYIDEIDKIT 189


>gi|315102008|gb|EFT73984.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL046PA1]
          Length = 717

 Score = 39.3 bits (90), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 203 VLLYGPPGTGKTLLARAVAGEAGVPFFSISG 233


>gi|313821991|gb|EFS59705.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL036PA1]
 gi|313824113|gb|EFS61827.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL036PA2]
 gi|313826480|gb|EFS64194.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL063PA1]
 gi|314926566|gb|EFS90397.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL036PA3]
 gi|314961368|gb|EFT05469.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL002PA2]
 gi|314980289|gb|EFT24383.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL072PA2]
 gi|314987373|gb|EFT31464.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL005PA2]
 gi|314989086|gb|EFT33177.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL005PA3]
 gi|315086079|gb|EFT58055.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL002PA3]
 gi|315087665|gb|EFT59641.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL072PA1]
 gi|327333318|gb|EGE75038.1| putative cell division protein [Propionibacterium acnes HL096PA3]
 gi|327445204|gb|EGE91858.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL013PA2]
 gi|332674668|gb|AEE71484.1| cell division protease FtsH [Propionibacterium acnes 266]
          Length = 717

 Score = 39.3 bits (90), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 203 VLLYGPPGTGKTLLARAVAGEAGVPFFSISG 233


>gi|313793175|gb|EFS41242.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL110PA1]
 gi|315078396|gb|EFT50427.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL053PA2]
 gi|327457122|gb|EGF03777.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL092PA1]
          Length = 717

 Score = 39.3 bits (90), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 203 VLLYGPPGTGKTLLARAVAGEAGVPFFSISG 233


>gi|313228702|emb|CBY17853.1| unnamed protein product [Oikopleura dioica]
          Length = 515

 Score = 39.3 bits (90), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPV-----IAKAGDLAALLTNLEDR---DV 108
           VL  GPPG GKT + + +A + G  F S S        I +   L  +L  L  R    V
Sbjct: 282 VLLFGPPGTGKTLIGKCIASQAGATFFSISASSMTSKWIGEGEKLVKVLFTLAQRKAPSV 341

Query: 109 LFIDEIHRL 117
           +F+DEI  L
Sbjct: 342 VFVDEIDSL 350


>gi|312134774|ref|YP_004002112.1| ATP-dependent protease la [Caldicellulosiruptor owensensis OL]
 gi|311774825|gb|ADQ04312.1| ATP-dependent protease La [Caldicellulosiruptor owensensis OL]
          Length = 775

 Score = 39.3 bits (90), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLA 71
           S E  DI++++    E+  G  +    +  +I   K + +    +L  VGPPG+GKT++A
Sbjct: 309 SDEKIDINVVKKVLDEDHYGLTKVKERILEYIAVRKLKNDMKGPILCLVGPPGVGKTSIA 368

Query: 72  QVVARELGVNF 82
           + +AR L  N+
Sbjct: 369 KSIARALNRNY 379


>gi|326783524|ref|YP_004323973.1| clamp loader subunit [Synechococcus phage Syn19]
 gi|310005027|gb|ADO99417.1| clamp loader subunit [Synechococcus phage Syn19]
          Length = 313

 Score = 39.3 bits (90), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 15/121 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+ +E+        S  + FI+  +     + ++L  G  G+GKTT+A+ +  ELG ++
Sbjct: 11  RPQKVEDCILPKSVKSTFQSFIDQGE-----IPNLLLSGTAGVGKTTIAKALCNELGADY 65

Query: 83  RSTSGP--------VIAKAGDLAAL--LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
              +G         V  +A + A+   LT      VL IDE    +  V+ +L  ++E+F
Sbjct: 66  YVINGSDEGRFLDTVRNQAKNFASTVSLTASARHKVLIIDEADNTTPDVQLLLRASIEEF 125

Query: 133 Q 133
           Q
Sbjct: 126 Q 126


>gi|312079317|ref|XP_003142122.1| ATPase [Loa loa]
 gi|307762714|gb|EFO21948.1| ATPase [Loa loa]
          Length = 657

 Score = 39.3 bits (90), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 15/32 (46%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT +A+ +A +  + F S  GP
Sbjct: 441 VLLYGPPGCGKTLIAKAIANQFKITFLSVKGP 472


>gi|303257390|ref|ZP_07343403.1| ATP-dependent protease La [Burkholderiales bacterium 1_1_47]
 gi|302859747|gb|EFL82825.1| ATP-dependent protease La [Burkholderiales bacterium 1_1_47]
          Length = 806

 Score = 39.3 bits (90), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 100/256 (39%), Gaps = 56/256 (21%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           +  VGPPG+GKT+L Q +AR  G  F R   G V  ++              G +   LT
Sbjct: 353 LCLVGPPGVGKTSLGQSIARATGRKFVRLALGGVRDESEIRGHRRTYIGSMPGRILQSLT 412

Query: 102 NLEDRDVLF-IDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLS 152
             E  + LF +DE+ ++ +           E+L P   +   D  V        V  +LS
Sbjct: 413 KAETNNPLFLLDEVDKMGMDYRGDPAAALLEVLDPEQNNTFQDHYV-------EVDFDLS 465

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR----------GAKLTGLA 202
               IA +  +  +  PL DR  + I L+ Y  ++   I QR          G K   L 
Sbjct: 466 HVMFIATSNSMN-IPAPLLDRMEV-IHLSGYTEDEKLHIAQRHLIPKQMKLNGVKPGELE 523

Query: 203 VTDEAACEIAMRSRGTPRIAG-RLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
           + D A  +I    R   R AG R L R            I R+     LL+    K+  +
Sbjct: 524 IEDSAIVDIV---RYYTREAGVRSLER--------EINKICRKTVRDILLKKTKGKVVAN 572

Query: 262 QLDLRYLTMIAR-NFG 276
             +L Y   + R NFG
Sbjct: 573 SDNLDYFLGVRRYNFG 588


>gi|301609016|ref|XP_002934061.1| PREDICTED: katanin p60 ATPase-containing subunit A-like 1-like
           [Xenopus (Silurana) tropicalis]
          Length = 487

 Score = 39.3 bits (90), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL VGPPG GKT LA+ VA E G  F + S   +
Sbjct: 241 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTL 274


>gi|294812616|ref|ZP_06771259.1| ATP-dependent Clp protease ATP-binding subunit clpX [Streptomyces
           clavuligerus ATCC 27064]
 gi|294325215|gb|EFG06858.1| ATP-dependent Clp protease ATP-binding subunit clpX [Streptomyces
           clavuligerus ATCC 27064]
          Length = 464

 Score = 39.3 bits (90), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 59/133 (44%), Gaps = 35/133 (26%)

Query: 21  LLRPRTLEEF-----TGQVEACSNLKVFIE------------AAKARAEALD----HVLF 59
           L +PR + EF      GQ  A   L V +              A+ R +A++    ++L 
Sbjct: 98  LPKPREIYEFLEGYVVGQEPAKKALSVAVYNHYKRVQAGETGGAQGREDAIELAKSNILL 157

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDV---- 108
           +GP G GKT LAQ +AR L V F       + +AG +   + N+        D DV    
Sbjct: 158 LGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKKAE 217

Query: 109 ---LFIDEIHRLS 118
              ++IDEI +++
Sbjct: 218 TGIIYIDEIDKVA 230


>gi|262280903|ref|ZP_06058686.1| ATP-dependent protease Clp [Acinetobacter calcoaceticus RUH2202]
 gi|262257803|gb|EEY76538.1| ATP-dependent protease Clp [Acinetobacter calcoaceticus RUH2202]
          Length = 437

 Score = 39.3 bits (90), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------ED 105
           A  ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+        D
Sbjct: 110 AKSNILLIGPTGSGKTLLAQTLARLLDVPFAMADATTLTEAGYVGEDVENIVQKLLQKAD 169

Query: 106 RDV-------LFIDEIHRLS 118
            DV       ++IDEI +++
Sbjct: 170 YDVEKAQKGIIYIDEIDKIT 189


>gi|242070735|ref|XP_002450644.1| hypothetical protein SORBIDRAFT_05g008540 [Sorghum bicolor]
 gi|241936487|gb|EES09632.1| hypothetical protein SORBIDRAFT_05g008540 [Sorghum bicolor]
          Length = 988

 Score = 39.3 bits (90), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 22/34 (64%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           +L  GPPG GKT+LA   A + GVN  + +GP I
Sbjct: 435 ILLYGPPGTGKTSLASSCAYDAGVNLFTINGPEI 468



 Score = 36.6 bits (83), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 8/71 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           +L +GPPG  KT +A+  A E  +NF +  GP +     GD    + +L  +       +
Sbjct: 758 LLMIGPPGCSKTLMARAAASEAKLNFLAVKGPELFSKWVGDSEKAVRSLFAKARANAPAI 817

Query: 109 LFIDEIHRLSI 119
           LF DEI  L++
Sbjct: 818 LFFDEIDGLAV 828


>gi|294893028|ref|XP_002774316.1| AAA ATPase, putative [Perkinsus marinus ATCC 50983]
 gi|239879610|gb|EER06132.1| AAA ATPase, putative [Perkinsus marinus ATCC 50983]
          Length = 711

 Score = 39.3 bits (90), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 19/32 (59%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG GKT LA+ VA     NF S  GP
Sbjct: 475 VLLFGPPGCGKTLLAKAVANASNANFISVKGP 506



 Score = 37.4 bits (85), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 27/49 (55%), Gaps = 2/49 (4%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL 103
           VL  GPPG GKT LA  +A ELG  +   S P I    +G+  A L +L
Sbjct: 204 VLLHGPPGSGKTMLATAIAGELGCAWFKVSAPEIVSGVSGESEATLRSL 252


>gi|254579010|ref|XP_002495491.1| ZYRO0B12606p [Zygosaccharomyces rouxii]
 gi|238938381|emb|CAR26558.1| ZYRO0B12606p [Zygosaccharomyces rouxii]
          Length = 777

 Score = 39.3 bits (90), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL  GPPG  KT  A+ +A E GVNF +  GP I
Sbjct: 547 VLLYGPPGCSKTLTAKALATESGVNFLAVKGPEI 580



 Score = 35.8 bits (81), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDR------DV 108
           +L  GPPG GKT L + VA     +  + +GP I     G+  A L  + D        +
Sbjct: 276 ILLHGPPGTGKTMLLRCVANTTDAHILTINGPSIVSKYLGETEATLREIFDEAKLYQPSI 335

Query: 109 LFIDEIHRLS 118
           +FIDEI  ++
Sbjct: 336 IFIDEIDSIA 345


>gi|297564371|ref|YP_003683344.1| hypothetical protein Ndas_5459 [Nocardiopsis dassonvillei subsp.
            dassonvillei DSM 43111]
 gi|296848820|gb|ADH70838.1| conserved hypothetical protein [Nocardiopsis dassonvillei subsp.
            dassonvillei DSM 43111]
          Length = 1676

 Score = 39.3 bits (90), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 17/37 (45%), Positives = 23/37 (62%)

Query: 57   VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA 93
            +L + PPG GKTTL + VA  LG+ F   +GP +  A
Sbjct: 1312 LLLISPPGYGKTTLMEYVASRLGLVFVKVNGPALGHA 1348


>gi|227893377|ref|ZP_04011182.1| ATP-dependent protease ATP-binding subunit [Lactobacillus
           ultunensis DSM 16047]
 gi|227864792|gb|EEJ72213.1| ATP-dependent protease ATP-binding subunit [Lactobacillus
           ultunensis DSM 16047]
          Length = 432

 Score = 39.3 bits (90), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 14/83 (16%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD--------LAALLTNLE--- 104
           ++  +GP G GKT LAQ +AR L V F       + +AG         L  LL N +   
Sbjct: 120 NIAMIGPTGSGKTYLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDL 179

Query: 105 ---DRDVLFIDEIHRLSIIVEEI 124
               R +++IDEI ++S   E +
Sbjct: 180 ERAQRGIIYIDEIDKISKKSENV 202


>gi|238486048|ref|XP_002374262.1| intermembrane space AAA protease IAP-1 [Aspergillus flavus
           NRRL3357]
 gi|220699141|gb|EED55480.1| intermembrane space AAA protease IAP-1 [Aspergillus flavus
           NRRL3357]
          Length = 624

 Score = 39.3 bits (90), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108
           VL VGPPG GKT LA+ VA E GV F   SG       V   A  +  L T    +   +
Sbjct: 189 VLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEVYVGVGAKRVRELFTQARSKAPAI 248

Query: 109 LFIDEI 114
           +FIDE+
Sbjct: 249 IFIDEL 254


>gi|194700788|gb|ACF84478.1| unknown [Zea mays]
 gi|194706416|gb|ACF87292.1| unknown [Zea mays]
          Length = 339

 Score = 39.3 bits (90), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RPR +++   Q E    L   ++ A      L H+LF GPPG GKTT A  +A +L
Sbjct: 16 RPRQVKDVAHQEEVIRVLNNTLQTAD-----LPHMLFYGPPGTGKTTTALAIAYQL 66


>gi|168217822|ref|ZP_02643447.1| ATP-dependent protease LonB [Clostridium perfringens NCTC 8239]
 gi|182380131|gb|EDT77610.1| ATP-dependent protease LonB [Clostridium perfringens NCTC 8239]
          Length = 570

 Score = 39.3 bits (90), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 5/55 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           RP  LEE  GQ +    LK  +     +     HV+  GPPG+GKT  A+++  E
Sbjct: 64  RPSNLEEIIGQEKGIKALKAALCGPNPQ-----HVIIYGPPGVGKTAAARIILEE 113


>gi|218847992|ref|YP_002454835.1| stage V sporulation protein K [Bacillus cereus G9842]
 gi|218546123|gb|ACK98516.1| stage V sporulation protein K [Bacillus cereus G9842]
          Length = 550

 Score = 39.3 bits (90), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 52/102 (50%), Gaps = 19/102 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI-AKAGDLAALL---TNLEDRD---- 107
           H++F G PG+GKTT A+++AR L        G ++     DL A     T ++ ++    
Sbjct: 331 HMVFKGSPGVGKTTFARIIARLLKEMKVLKKGHLVEVDRSDLVAGYVGQTAIKTKEVIES 390

Query: 108 ----VLFIDEIHRL-----SIIVEEI--LYPAMEDFQLDLMV 138
               VLFIDE + L     S   E I  L  AMED++ DL+V
Sbjct: 391 AIGGVLFIDEAYSLVQEQDSFGKEAIDTLVKAMEDYREDLVV 432


>gi|167767829|ref|ZP_02439882.1| hypothetical protein CLOSS21_02366 [Clostridium sp. SS2/1]
 gi|167710568|gb|EDS21147.1| hypothetical protein CLOSS21_02366 [Clostridium sp. SS2/1]
          Length = 598

 Score = 39.3 bits (90), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E  V F S SG
Sbjct: 183 VLLVGPPGTGKTLLAKAVAGEANVPFFSISG 213


>gi|167761782|ref|ZP_02433909.1| hypothetical protein BACSTE_00122 [Bacteroides stercoris ATCC
           43183]
 gi|167700288|gb|EDS16867.1| hypothetical protein BACSTE_00122 [Bacteroides stercoris ATCC
           43183]
          Length = 607

 Score = 39.3 bits (90), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 10/110 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP T E   GQ    + LK  I   K     L H  LF GP G+GKTT A++ A+ +   
Sbjct: 12  RPSTFESVVGQRALTTTLKNAIATGK-----LAHAYLFCGPRGVGKTTCARIFAKTINCM 66

Query: 82  FRSTSGPVIAKAGDLAAL----LTNLEDRDVLFIDEIHRLSIIVEEILYP 127
             +  G    +     A       N+ + D    + +  +  +VE++  P
Sbjct: 67  SPTAEGEACNQCESCTAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIP 116


>gi|147825239|emb|CAN64406.1| hypothetical protein VITISV_003510 [Vitis vinifera]
          Length = 169

 Score = 39.3 bits (90), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 9/67 (13%)

Query: 57  VLFVGPPGLGKTTLAQVVARELG-----VNFRS--TSGPVIAKAGDLAALLTNLEDR--D 107
           +L  GPPGLGKTTLA V A+  G     +N     +S  + AK  D+  + + + D   +
Sbjct: 28  LLLCGPPGLGKTTLAHVAAKHCGYRVVEINASDDRSSSTIEAKILDVVQMNSVMADSKPN 87

Query: 108 VLFIDEI 114
            L IDEI
Sbjct: 88  CLVIDEI 94


>gi|51599040|ref|YP_073228.1| cell division protein [Borrelia garinii PBi]
 gi|51573611|gb|AAU07636.1| cell division protein [Borrelia garinii PBi]
          Length = 639

 Score = 39.3 bits (90), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 7/69 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ E    L+  +E         K  A+    VL VG PG GKT LA+ VA E 
Sbjct: 170 TFKDVAGQEEVKQELREVVEFLKNPKKFEKIGAKIPKGVLLVGSPGTGKTLLAKAVAGEA 229

Query: 79  GVNFRSTSG 87
           GV+F   SG
Sbjct: 230 GVSFFHMSG 238


>gi|50841750|ref|YP_054977.1| putative cell division protein FtsH [Propionibacterium acnes
           KPA171202]
 gi|289424180|ref|ZP_06425963.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes SK187]
 gi|50839352|gb|AAT82019.1| putative cell division protein FtsH [Propionibacterium acnes
           KPA171202]
 gi|289154877|gb|EFD03559.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes SK187]
 gi|313802737|gb|EFS43955.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL110PA2]
 gi|313814558|gb|EFS52272.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL025PA1]
 gi|313828789|gb|EFS66503.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL063PA2]
 gi|313831709|gb|EFS69423.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL007PA1]
 gi|313834409|gb|EFS72123.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL056PA1]
 gi|313840400|gb|EFS78114.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL086PA1]
 gi|314969686|gb|EFT13784.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL037PA1]
 gi|314974751|gb|EFT18846.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL053PA1]
 gi|314977052|gb|EFT21147.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL045PA1]
 gi|314985463|gb|EFT29555.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL005PA1]
 gi|315082135|gb|EFT54111.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL078PA1]
 gi|315097298|gb|EFT69274.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL038PA1]
 gi|315106292|gb|EFT78268.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL030PA1]
 gi|315110070|gb|EFT82046.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL030PA2]
 gi|327331332|gb|EGE73071.1| cell division protein FtsH [Propionibacterium acnes HL096PA2]
 gi|327447287|gb|EGE93941.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL043PA1]
 gi|327450266|gb|EGE96920.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL043PA2]
 gi|328761145|gb|EGF74689.1| cell division protein FtsH [Propionibacterium acnes HL099PA1]
          Length = 717

 Score = 39.3 bits (90), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 203 VLLYGPPGTGKTLLARAVAGEAGVPFFSISG 233


>gi|50730993|ref|XP_417114.1| PREDICTED: similar to Katanin p60 subunit A-like 1 [Gallus gallus]
          Length = 489

 Score = 39.3 bits (90), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL VGPPG GKT LA+ VA E G  F + S   +
Sbjct: 243 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTL 276


>gi|28211964|ref|NP_782908.1| ATP-dependent protease La [Clostridium tetani E88]
 gi|28204407|gb|AAO36845.1| ATP-dependent protease La [Clostridium tetani E88]
          Length = 771

 Score = 39.3 bits (90), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 94/212 (44%), Gaps = 43/212 (20%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH--VLFVGPPGLGKTTL 70
           ++++ DI   R    EE  G +E   N  +   A K  +++L    +  VGPPG+GKT++
Sbjct: 305 TKDNLDIKRAREIFEEEHYG-LEDVKNRIIEYLAVKKMSKSLKGPILCLVGPPGVGKTSI 363

Query: 71  AQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLTNLEDRDVLF-IDEI 114
           A+ +A  L  NF R + G V  +A              G +   +   + ++ LF +DEI
Sbjct: 364 AKSIAHALNRNFVRMSLGGVRDEAEIRGHRKTYIGAIPGRIIYGMKQAKSKNPLFLLDEI 423

Query: 115 HRLSIIVEEILYPAMEDFQ-------LDLMVGEGPSA-----RSVKINLSRFTLIAATTR 162
            ++S            DF+       L+++  E  +A       ++ +LS+   I     
Sbjct: 424 DKMS-----------SDFRGNPGDALLEVLDSEQNNAFRDHYLELECDLSKVLFITTANT 472

Query: 163 VGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           +G +  PL DR  I I ++ Y  E+   I +R
Sbjct: 473 LGTIPRPLMDRMEI-IEVSGYTGEEKFNIAKR 503


>gi|76801540|ref|YP_326548.1| replication factor C large subunit [Natronomonas pharaonis DSM
          2160]
 gi|83288435|sp|Q3ISA5|RFCL_NATPD RecName: Full=Replication factor C large subunit; Short=RFC large
          subunit; AltName: Full=Clamp loader large subunit
 gi|76557405|emb|CAI48982.1| replication factor C large subunit [Natronomonas pharaonis DSM
          2160]
          Length = 483

 Score = 39.3 bits (90), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 3/58 (5%)

Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           RP TL E  G  +A      F E AKA  +  + V+  G PG+GKT+ A  +A ++G
Sbjct: 8  YRPTTLSEVRGNNKA---RDAFEEWAKAWEDHREAVILHGSPGVGKTSAAHALANDMG 62


>gi|83949689|ref|ZP_00958422.1| ATP-dependent protease ATP-binding subunit [Roseovarius nubinhibens
           ISM]
 gi|83837588|gb|EAP76884.1| ATP-dependent protease ATP-binding subunit [Roseovarius nubinhibens
           ISM]
          Length = 421

 Score = 39.3 bits (90), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+            
Sbjct: 113 NILLIGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSSEYNV 172

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDE+ +++
Sbjct: 173 ERAQRGIVYIDEVDKIT 189


>gi|219666214|ref|YP_002456649.1| ATP-dependent metalloprotease FtsH [Desulfitobacterium hafniense
           DCB-2]
 gi|219536474|gb|ACL18213.1| ATP-dependent metalloprotease FtsH [Desulfitobacterium hafniense
           DCB-2]
          Length = 657

 Score = 39.3 bits (90), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 193 VLLFGPPGTGKTLLARAVAGEAGVPFFSISG 223


>gi|25011425|ref|NP_735820.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           agalactiae NEM316]
 gi|76786965|ref|YP_329953.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           agalactiae A909]
 gi|77406716|ref|ZP_00783755.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           agalactiae H36B]
 gi|77411190|ref|ZP_00787542.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           agalactiae CJB111]
 gi|77414070|ref|ZP_00790239.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           agalactiae 515]
 gi|46576576|sp|Q8E4L8|CLPX_STRA3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|123601634|sp|Q3K0K0|CLPX_STRA1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|24412963|emb|CAD47042.1| unknown [Streptococcus agalactiae NEM316]
 gi|76562022|gb|ABA44606.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           agalactiae A909]
 gi|77159868|gb|EAO71010.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           agalactiae 515]
 gi|77162808|gb|EAO73767.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           agalactiae CJB111]
 gi|77174679|gb|EAO77509.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           agalactiae H36B]
          Length = 408

 Score = 39.3 bits (90), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +A+ L V F       + +AG    D+  +L  L        
Sbjct: 112 NILMIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYNV 171

Query: 104 --EDRDVLFIDEIHRLS 118
              +R ++++DEI +++
Sbjct: 172 ERAERGIIYVDEIDKIA 188


>gi|22537459|ref|NP_688310.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           agalactiae 2603V/R]
 gi|76798608|ref|ZP_00780836.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           agalactiae 18RS21]
 gi|77409179|ref|ZP_00785891.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           agalactiae COH1]
 gi|46576570|sp|Q8DZ10|CLPX_STRA5 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|22534337|gb|AAN00183.1|AE014252_6 ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           agalactiae 2603V/R]
 gi|76586042|gb|EAO62572.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           agalactiae 18RS21]
 gi|77172225|gb|EAO75382.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           agalactiae COH1]
          Length = 408

 Score = 39.3 bits (90), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +A+ L V F       + +AG    D+  +L  L        
Sbjct: 112 NILMIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYNV 171

Query: 104 --EDRDVLFIDEIHRLS 118
              +R ++++DEI +++
Sbjct: 172 ERAERGIIYVDEIDKIA 188


>gi|329964135|ref|ZP_08301301.1| DNA polymerase III, subunit gamma and tau [Bacteroides fluxus YIT
           12057]
 gi|328525655|gb|EGF52684.1| DNA polymerase III, subunit gamma and tau [Bacteroides fluxus YIT
           12057]
          Length = 609

 Score = 39.3 bits (90), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 10/110 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP T E   GQ    + LK  I   K     L H  LF GP G+GKTT A++ A+ +   
Sbjct: 12  RPSTFESVVGQRALTTTLKNAIATGK-----LAHAYLFCGPRGVGKTTCARIFAKTINCM 66

Query: 82  FRSTSGPVIAKAGDLAAL----LTNLEDRDVLFIDEIHRLSIIVEEILYP 127
             +  G    +     A       N+ + D    + +  +  +VE++  P
Sbjct: 67  NPTADGEACNQCESCTAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIP 116


>gi|320037406|gb|EFW19343.1| ATP-dependent protease La 2 [Coccidioides posadasii str. Silveira]
          Length = 922

 Score = 39.3 bits (90), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 76/179 (42%), Gaps = 33/179 (18%)

Query: 41  KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTS-GPVIAKA------ 93
           K+ +  +K + +    +L VGPPG GKT+LA+ +A  LG  F   S G V  +A      
Sbjct: 456 KLHVLKSKRKTDKSPILLLVGPPGTGKTSLAKSIATSLGRKFHRISLGGVRDEAEIRGHR 515

Query: 94  ----GDLAALLTNLEDR-----DVLFIDEIHRL---------SIIVEEILYPAMEDFQLD 135
                 +  L+ N   +      V  +DEI ++         S  + E+L P       D
Sbjct: 516 RTYVAAMPGLIVNGLKKVGVANPVFLLDEIDKVGGANFHGDPSAAMLEVLDPEQNHSFSD 575

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
             +       ++ I+LS+   IA    +  +  PL DR    I+L+ Y   + + I +R
Sbjct: 576 HYI-------NIPIDLSKVLFIATANSLDTIPAPLLDRMET-IQLSGYTTIEKRHIARR 626


>gi|313765281|gb|EFS36645.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL013PA1]
 gi|313815350|gb|EFS53064.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL059PA1]
 gi|314917217|gb|EFS81048.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL050PA1]
 gi|314921717|gb|EFS85548.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL050PA3]
 gi|314931076|gb|EFS94907.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL067PA1]
 gi|314955055|gb|EFS99461.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL027PA1]
 gi|315099486|gb|EFT71462.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL059PA2]
 gi|327454532|gb|EGF01187.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL087PA3]
 gi|327456602|gb|EGF03257.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL083PA2]
 gi|328755586|gb|EGF69202.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL087PA1]
 gi|328756913|gb|EGF70529.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL025PA2]
          Length = 717

 Score = 39.3 bits (90), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 203 VLLYGPPGTGKTLLARAVAGEAGVPFFSISG 233


>gi|310778380|ref|YP_003966713.1| ATP-dependent protease La [Ilyobacter polytropus DSM 2926]
 gi|309747703|gb|ADO82365.1| ATP-dependent protease La [Ilyobacter polytropus DSM 2926]
          Length = 768

 Score = 39.3 bits (90), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 96/222 (43%), Gaps = 55/222 (24%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           +  VGPPG+GKT+LA+ +A  +G  F R + G V  +A              G +   L 
Sbjct: 345 LCLVGPPGVGKTSLAKSIASAMGRKFARVSLGGVRDEADIRGHRRTYIGSMPGRIIRTLK 404

Query: 102 NLEDRD-VLFIDEIHRLSIIVE--------EILYPA----MEDFQLDLMVGEGPSARSVK 148
           + + ++ ++ +DEI ++S   +        E+L P      ED  +D+            
Sbjct: 405 DAQSKNPLVLLDEIDKMSSDFKGDPASAMLEVLDPEQNKHFEDHYVDM-----------P 453

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL----KTIVQRGAKLTGLAVT 204
            +LS    IA    +  +  PL+DR  I    ++ E E L    + ++++     GL   
Sbjct: 454 FDLSDVFFIATANDLRTIPAPLRDRMDIISLSSYTEYEKLHIAKRYLIEQAKNENGL--- 510

Query: 205 DEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +    E++ R+         L+R + ++   A  +T+ REI+
Sbjct: 511 NNITLELSDRA---------LMRIIDEYTREAGVRTLKREIS 543


>gi|310821762|ref|YP_003954120.1| ATP-dependent CLP protease, ATP-binding subunit CLPx [Stigmatella
           aurantiaca DW4/3-1]
 gi|309394834|gb|ADO72293.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Stigmatella
           aurantiaca DW4/3-1]
          Length = 426

 Score = 39.3 bits (90), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +AR L V F       + +AG    D+  ++ NL        
Sbjct: 121 NILLIGPTGSGKTLLAQSLARFLNVPFTIADATSLTEAGYVGEDVENIIQNLLHNADYDV 180

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI +++
Sbjct: 181 EKAARGIVYIDEIDKIA 197


>gi|309811163|ref|ZP_07704959.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Dermacoccus
           sp. Ellin185]
 gi|308434893|gb|EFP58729.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Dermacoccus
           sp. Ellin185]
          Length = 413

 Score = 39.3 bits (90), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 20/100 (20%)

Query: 33  QVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK 92
           Q    S  K  +E AK+      ++L +GP G GKT LAQ +AR L V F       + +
Sbjct: 97  QAAEASGSKDPVEIAKS------NILLIGPTGCGKTYLAQTMARMLNVPFAIADATALTE 150

Query: 93  AGDLAALLTNL-------EDRD-------VLFIDEIHRLS 118
           AG +   + N+        D D       +++IDEI +++
Sbjct: 151 AGYVGEDVENILLKLLQASDFDIKRAETGIIYIDEIDKVA 190


>gi|293610273|ref|ZP_06692574.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827505|gb|EFF85869.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 439

 Score = 39.3 bits (90), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------ED 105
           A  ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+        D
Sbjct: 112 AKSNILLIGPTGSGKTLLAQTLARLLDVPFAMADATTLTEAGYVGEDVENIVQKLLQKAD 171

Query: 106 RDV-------LFIDEIHRLS 118
            DV       ++IDEI +++
Sbjct: 172 YDVEKAQKGIIYIDEIDKIT 191


>gi|289428980|ref|ZP_06430660.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes J165]
 gi|289157981|gb|EFD06204.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes J165]
 gi|328758404|gb|EGF72020.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL020PA1]
          Length = 717

 Score = 39.3 bits (90), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 203 VLLYGPPGTGKTLLARAVAGEAGVPFFSISG 233


>gi|297526214|ref|YP_003668238.1| ATPase associated with various cellular activities AAA_5
           [Staphylothermus hellenicus DSM 12710]
 gi|297255130|gb|ADI31339.1| ATPase associated with various cellular activities AAA_5
           [Staphylothermus hellenicus DSM 12710]
          Length = 568

 Score = 39.3 bits (90), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 12/51 (23%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTS------------GPVIAKAG 94
           H+L VGPPG GK+ LA+++A+ L     ST+            GP+I+  G
Sbjct: 243 HLLLVGPPGTGKSYLAELLAKYLNYELVSTTASSTWTRYDFIGGPIISSKG 293


>gi|282866217|ref|ZP_06275264.1| 3-dehydroquinate synthase [Streptomyces sp. ACTE]
 gi|282559001|gb|EFB64556.1| 3-dehydroquinate synthase [Streptomyces sp. ACTE]
          Length = 548

 Score = 39.3 bits (90), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 16/38 (42%), Positives = 26/38 (68%)

Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG 94
          ++ VGP G+GK+T+ +++A  LG  +R T   V+A AG
Sbjct: 6  IVLVGPMGVGKSTVGELLAERLGTTYRDTDADVVATAG 43


>gi|266622121|ref|ZP_06115056.1| cell division protein FtsH [Clostridium hathewayi DSM 13479]
 gi|288866171|gb|EFC98469.1| cell division protein FtsH [Clostridium hathewayi DSM 13479]
          Length = 622

 Score = 39.3 bits (90), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 46/105 (43%), Gaps = 15/105 (14%)

Query: 25  RTLEEFTGQVEACSNLKVFIE-------AAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +T  +  GQ EA   LK  ++        A   A      L VGPPG GKT LA+ VA E
Sbjct: 175 KTFADVAGQEEAKDALKEIVDFLHNPQKYADIGASLPKGALLVGPPGTGKTLLARAVAGE 234

Query: 78  LGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--VLFIDEI 114
             V F S SG    +      A  +  L     ++   ++FIDEI
Sbjct: 235 AHVPFFSISGSEFVEMFVGMGASKVRDLFKQANEKAPCIVFIDEI 279


>gi|326203839|ref|ZP_08193701.1| Sigma 54 interacting domain protein [Clostridium papyrosolvens DSM
           2782]
 gi|325985937|gb|EGD46771.1| Sigma 54 interacting domain protein [Clostridium papyrosolvens DSM
           2782]
          Length = 560

 Score = 39.3 bits (90), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 5/62 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP TL +  GQ +    L+  +  A  +     HV+  GPPG+GKT  A+V+  E   N 
Sbjct: 63  RPATLSDIVGQEQGLKALRAALCGANPQ-----HVIIYGPPGVGKTAAARVILEEAKKNS 117

Query: 83  RS 84
            S
Sbjct: 118 MS 119


>gi|226953944|ref|ZP_03824408.1| ATP-dependent Clp protease ATP-binding subunit [Acinetobacter sp.
           ATCC 27244]
 gi|226835298|gb|EEH67681.1| ATP-dependent Clp protease ATP-binding subunit [Acinetobacter sp.
           ATCC 27244]
          Length = 436

 Score = 39.3 bits (90), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------ED 105
           A  ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+        D
Sbjct: 110 AKSNILLIGPTGSGKTLLAQTLARLLDVPFAMADATTLTEAGYVGEDVENIVQKLLQKAD 169

Query: 106 RDV-------LFIDEIHRLS 118
            DV       ++IDEI +++
Sbjct: 170 YDVEKAQKGIIYIDEIDKIT 189


>gi|222152935|ref|YP_002562112.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           uberis 0140J]
 gi|254763867|sp|B9DU73|CLPX_STRU0 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|222113748|emb|CAR41754.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus
           uberis 0140J]
          Length = 409

 Score = 39.3 bits (90), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +A+ L V F       + +AG    D+  +L  L        
Sbjct: 113 NILMIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYNV 172

Query: 104 --EDRDVLFIDEIHRLS 118
              +R ++++DEI +++
Sbjct: 173 ERAERGIIYVDEIDKIA 189


>gi|218132111|ref|ZP_03460915.1| hypothetical protein BACEGG_03739 [Bacteroides eggerthii DSM 20697]
 gi|217985761|gb|EEC52102.1| hypothetical protein BACEGG_03739 [Bacteroides eggerthii DSM 20697]
          Length = 607

 Score = 39.3 bits (90), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 10/110 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP T E   GQ    + LK  I   K     L H  LF GP G+GKTT A++ A+ +   
Sbjct: 12  RPSTFESVVGQHALTTTLKNAIATNK-----LAHAYLFCGPRGVGKTTCARIFAKTINCM 66

Query: 82  FRSTSGPVIAKAGDLAAL----LTNLEDRDVLFIDEIHRLSIIVEEILYP 127
             +  G    +     A       N+ + D    + +  +  +VE++  P
Sbjct: 67  SPTAEGEACNQCESCTAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIP 116


>gi|295129829|ref|YP_003580492.1| Cell division protein FtsH [Propionibacterium acnes SK137]
 gi|310946756|sp|D4HA34|FTSH_PROAS RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|291376079|gb|ADD99933.1| Cell division protein FtsH [Propionibacterium acnes SK137]
          Length = 717

 Score = 39.3 bits (90), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 203 VLLYGPPGTGKTLLARAVAGEAGVPFFSISG 233


>gi|212636026|ref|YP_002312551.1| ATP-dependent protease ATP-binding subunit ClpX [Shewanella
           piezotolerans WP3]
 gi|226706596|sp|B8CRF6|CLPX_SHEPW RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|212557510|gb|ACJ29964.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella
           piezotolerans WP3]
          Length = 423

 Score = 39.3 bits (90), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LA+ +AR L V F       + +AG +   + N+            
Sbjct: 113 NILLIGPTGSGKTLLAETLARFLNVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 172

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 173 EKAQRGIVYIDEIDKIS 189


>gi|195384371|ref|XP_002050891.1| GJ19952 [Drosophila virilis]
 gi|194145688|gb|EDW62084.1| GJ19952 [Drosophila virilis]
          Length = 749

 Score = 39.3 bits (90), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL VGPPG GKT LA+ VA E  V F   +GP
Sbjct: 350 VLLVGPPGTGKTLLARAVAGEASVPFFHAAGP 381


>gi|193783558|dbj|BAG53469.1| unnamed protein product [Homo sapiens]
          Length = 490

 Score = 39.3 bits (90), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 18/30 (60%), Positives = 20/30 (66%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTS 86
           VL VGPPG GKT LA+ VA E G  F + S
Sbjct: 244 VLMVGPPGTGKTMLAKAVATECGTTFFNVS 273


>gi|216263728|ref|ZP_03435723.1| cell division protein FtsH [Borrelia afzelii ACA-1]
 gi|215980572|gb|EEC21393.1| cell division protein FtsH [Borrelia afzelii ACA-1]
          Length = 639

 Score = 39.3 bits (90), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 7/69 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ E    L+  +E         K  A+    VL VG PG GKT LA+ VA E 
Sbjct: 170 TFKDVAGQEEVKQELREVVEFLKNPKKFEKIGAKIPKGVLLVGSPGTGKTLLAKAVAGEA 229

Query: 79  GVNFRSTSG 87
           GV+F   SG
Sbjct: 230 GVSFFHMSG 238


>gi|111115623|ref|YP_710241.1| cell division protein [Borrelia afzelii PKo]
 gi|110890897|gb|ABH02065.1| cell division protein [Borrelia afzelii PKo]
          Length = 639

 Score = 39.3 bits (90), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 7/69 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ E    L+  +E         K  A+    VL VG PG GKT LA+ VA E 
Sbjct: 170 TFKDVAGQEEVKQELREVVEFLKNPKKFEKIGAKIPKGVLLVGSPGTGKTLLAKAVAGEA 229

Query: 79  GVNFRSTSG 87
           GV+F   SG
Sbjct: 230 GVSFFHMSG 238


>gi|110769975|ref|XP_001122528.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit ClpX-like
           [Apis mellifera]
          Length = 361

 Score = 39.3 bits (90), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 14/83 (16%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD--------LAALLTNLE--- 104
           ++  +GP G GKT LAQ +AR L V F       + +AG         L  LL N +   
Sbjct: 47  NIALIGPTGSGKTYLAQTLARILDVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDI 106

Query: 105 ---DRDVLFIDEIHRLSIIVEEI 124
              +R +++IDEI ++S   E +
Sbjct: 107 ERAERGIIYIDEIDKISKKSENV 129


>gi|50914054|ref|YP_060026.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           pyogenes MGAS10394]
 gi|61211417|sp|Q5XCM0|CLPX_STRP6 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|50903128|gb|AAT86843.1| ATP-dependent clp protease ATP-binding subunit [Streptococcus
           pyogenes MGAS10394]
          Length = 409

 Score = 39.3 bits (90), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +A+ L V F       + +AG    D+  +L  L        
Sbjct: 113 NILMIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYNV 172

Query: 104 --EDRDVLFIDEIHRLS 118
              +R ++++DEI +++
Sbjct: 173 ERAERGIIYVDEIDKIA 189


>gi|47205942|emb|CAF93631.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 389

 Score = 39.3 bits (90), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 56/124 (45%), Gaps = 23/124 (18%)

Query: 8   LSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV--------L 58
           L  N+S ED  ++S        E  G  E    L+  IE      E    V        L
Sbjct: 118 LVYNMSHEDPGNVSY------SEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCL 171

Query: 59  FVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA-GDLAALLTNLED--RD----VLF 110
             GPPG GKT LA+ VA +L  NF +  S  ++ K  G+ A L+  + +  RD    ++F
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIF 231

Query: 111 IDEI 114
           +DEI
Sbjct: 232 MDEI 235


>gi|89098929|ref|ZP_01171809.1| ATP-dependent protease [Bacillus sp. NRRL B-14911]
 gi|89086333|gb|EAR65454.1| ATP-dependent protease [Bacillus sp. NRRL B-14911]
          Length = 555

 Score = 39.3 bits (90), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +RP + E+  GQ +   +LK  +     +     HV+  GPPG+GKT  A++V  E
Sbjct: 63  VRPASFEDIVGQADGIKSLKAALCGPNPQ-----HVIIYGPPGVGKTAAARLVLEE 113


>gi|85704730|ref|ZP_01035831.1| ATP-dependent protease ATP-binding subunit [Roseovarius sp. 217]
 gi|85670548|gb|EAQ25408.1| ATP-dependent protease ATP-binding subunit [Roseovarius sp. 217]
          Length = 422

 Score = 39.3 bits (90), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+            
Sbjct: 112 NILLIGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSSEYNV 171

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDE+ +++
Sbjct: 172 ERAQRGIVYIDEVDKIT 188


>gi|119774362|ref|YP_927102.1| ATP-dependent protease ATP-binding subunit ClpX [Shewanella
           amazonensis SB2B]
 gi|166215200|sp|A1S4X6|CLPX_SHEAM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|119766862|gb|ABL99432.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Shewanella
           amazonensis SB2B]
          Length = 425

 Score = 39.3 bits (90), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LA+ +AR L V F       + +AG +   + N+            
Sbjct: 114 NILLIGPTGSGKTLLAETLARFLNVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 173

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 174 EKAQRGIVYIDEIDKIS 190


>gi|325695773|gb|EGD37672.1| cell division protein FtsH [Streptococcus sanguinis SK150]
          Length = 659

 Score = 39.3 bits (90), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL-EDRD-----V 108
           VL  GPPG GKT LA+ VA E GV F S SG    +   G  A+ + +L ED       +
Sbjct: 224 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRSLFEDAKKAAPAI 283

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 284 IFIDEI 289


>gi|313817473|gb|EFS55187.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL046PA2]
          Length = 717

 Score = 39.3 bits (90), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 203 VLLYGPPGTGKTLLARAVAGEAGVPFFSISG 233


>gi|313806394|gb|EFS44901.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL087PA2]
          Length = 717

 Score = 39.3 bits (90), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 203 VLLYGPPGTGKTLLARAVAGEAGVPFFSISG 233


>gi|299771639|ref|YP_003733665.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter sp.
           DR1]
 gi|298701727|gb|ADI92292.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter sp.
           DR1]
          Length = 437

 Score = 39.3 bits (90), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------ED 105
           A  ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+        D
Sbjct: 110 AKSNILLIGPTGSGKTLLAQTLARLLDVPFAMADATTLTEAGYVGEDVENIVQKLLQKAD 169

Query: 106 RDV-------LFIDEIHRLS 118
            DV       ++IDEI +++
Sbjct: 170 YDVEKAQKGIIYIDEIDKIT 189


>gi|297832492|ref|XP_002884128.1| AAA-type ATPase family protein [Arabidopsis lyrata subsp. lyrata]
 gi|297329968|gb|EFH60387.1| AAA-type ATPase family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 633

 Score = 39.3 bits (90), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 70/157 (44%), Gaps = 35/157 (22%)

Query: 39  NLKVFIEA-AKARAEALDH------VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA 91
           +LK  IE  A+A A    H      ++F GPPG GKT +A+ +AR+ G+++   +G  +A
Sbjct: 360 SLKTRIERLARATANTKSHKAPFRNMMFYGPPGTGKTLVAREIARKSGLDYAMMTGGDVA 419

Query: 92  KAGDLAALLTNLED----------RDVLFIDE-----IHRLSIIVEEILYPAMEDFQLDL 136
             G  A  +T + +            +LFIDE       R S  + E    A+      L
Sbjct: 420 PLG--AQAVTKIHEIFDWAKKSNKGLLLFIDEADAFLCERNSTYMSEAQRSALN----AL 473

Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           +   G  +R +        L+ AT R G L + + DR
Sbjct: 474 LFRTGDQSRDI-------VLVLATNRPGDLDSAVTDR 503


>gi|296194409|ref|XP_002744995.1| PREDICTED: cell cycle checkpoint protein RAD17 [Callithrix jacchus]
          Length = 653

 Score = 39.3 bits (90), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 3/68 (4%)

Query: 26  TLEEFTG---QVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           +LE+  G     E  S  + +++  K   +    +L  GPPG GKTT  +++++ELG+  
Sbjct: 71  SLEQIYGLENSEEYLSGNEPWVDKYKPETQGGSILLITGPPGCGKTTTIKILSKELGIQV 130

Query: 83  RSTSGPVI 90
           +    PV+
Sbjct: 131 QEWINPVL 138


>gi|260432981|ref|ZP_05786952.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260416809|gb|EEX10068.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 422

 Score = 39.3 bits (90), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+            
Sbjct: 114 NILLIGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNV 173

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDE+ +++
Sbjct: 174 ERAQRGIVYIDEVDKIT 190


>gi|302916655|ref|XP_003052138.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256733077|gb|EEU46425.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 1209

 Score = 39.3 bits (90), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 34/70 (48%), Gaps = 8/70 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           +L  G PG GKT LA  VA E G+NF S  GP I     G     + +L DR       V
Sbjct: 868 LLLYGYPGCGKTLLASAVAGECGLNFISVKGPEILNKYIGASEKSVRDLFDRAQAAKPCV 927

Query: 109 LFIDEIHRLS 118
           LF DE   ++
Sbjct: 928 LFFDEFDSIA 937


>gi|229825873|ref|ZP_04451942.1| hypothetical protein GCWU000182_01237 [Abiotrophia defectiva ATCC
           49176]
 gi|229789893|gb|EEP26007.1| hypothetical protein GCWU000182_01237 [Abiotrophia defectiva ATCC
           49176]
          Length = 611

 Score = 39.3 bits (90), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           V+  GPPG GKT LA+ VA E GV F S SG
Sbjct: 205 VILTGPPGTGKTLLAKAVAGEAGVPFFSISG 235


>gi|226507260|ref|NP_001145788.1| hypothetical protein LOC100279295 [Zea mays]
 gi|219884425|gb|ACL52587.1| unknown [Zea mays]
          Length = 331

 Score = 39.3 bits (90), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 33/67 (49%), Gaps = 10/67 (14%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED---------RD 107
           +L  GPPG GKTTLA  +A E GV F   S P +  +G   A   N+             
Sbjct: 220 LLLHGPPGCGKTTLAHAIAIETGVLFYKISAPEVV-SGVSGASEENIRGLFQKAYRTAPS 278

Query: 108 VLFIDEI 114
           ++FIDEI
Sbjct: 279 IVFIDEI 285


>gi|182627121|ref|ZP_02954839.1| rubrerythrin [Clostridium perfringens D str. JGS1721]
 gi|177907510|gb|EDT70168.1| rubrerythrin [Clostridium perfringens D str. JGS1721]
          Length = 549

 Score = 39.3 bits (90), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 5/55 (9%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
          RP  LEE  GQ +    LK  +     +     HV+  GPPG+GKT  A+++  E
Sbjct: 43 RPSNLEEIIGQEKGIKALKAALCGPNPQ-----HVIIYGPPGVGKTAAARIILEE 92


>gi|197122724|ref|YP_002134675.1| ATP-dependent protease ATP-binding subunit ClpX [Anaeromyxobacter
           sp. K]
 gi|220917507|ref|YP_002492811.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|196172573|gb|ACG73546.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Anaeromyxobacter sp. K]
 gi|219955361|gb|ACL65745.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 427

 Score = 39.3 bits (90), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT LAQ +AR L V F       + +AG    D+  ++ NL        
Sbjct: 123 NILLIGPTGSGKTLLAQSLARFLNVPFTIADATSLTEAGYVGEDVENIIQNLLHNADYDV 182

Query: 104 --EDRDVLFIDEIHRLS 118
               R ++++DEI +++
Sbjct: 183 EKASRGIVYVDEIDKIA 199


>gi|158337485|ref|YP_001518660.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris
           marina MBIC11017]
 gi|158307726|gb|ABW29343.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris
           marina MBIC11017]
          Length = 634

 Score = 39.3 bits (90), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL +GPPG GKT LA+ ++ E GV F S SG
Sbjct: 202 VLLIGPPGTGKTLLAKAISGEAGVPFFSISG 232


>gi|91791263|ref|YP_552213.1| AAA ATPase, central region [Polaromonas sp. JS666]
 gi|91701144|gb|ABE47315.1| AAA ATPase, central region [Polaromonas sp. JS666]
          Length = 577

 Score = 39.3 bits (90), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 50/105 (47%), Gaps = 14/105 (13%)

Query: 25  RTLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +   E +   E    +K+ I       E  ++  +A   VLF G PG GKT  A+++A+E
Sbjct: 334 KAFAEMSYPAEQSDTIKLLISRIASSFEIEESGGQAPSGVLFYGDPGTGKTETARMIAKE 393

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLED-RD----VLFIDEIHRL 117
            G  F   SG  IA+  D A L   L+  R+    ++FIDE   L
Sbjct: 394 TGWAFFPLSGSDIAR--DPAILEKTLKQVRNARPAIIFIDEADDL 436


>gi|55925351|ref|NP_001007432.1| katanin p60 ATPase-containing subunit A-like 1 [Danio rerio]
 gi|82232967|sp|Q5U3S1|KATL1_DANRE RecName: Full=Katanin p60 ATPase-containing subunit A-like 1;
           Short=Katanin p60 subunit A-like 1; AltName: Full=p60
           katanin-like 1
 gi|55250013|gb|AAH85416.1| Zgc:101696 [Danio rerio]
          Length = 488

 Score = 39.3 bits (90), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL VGPPG GKT LA+ VA E G  F + S   +
Sbjct: 242 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTL 275


>gi|219670925|ref|YP_002461360.1| ATPase AAA [Desulfitobacterium hafniense DCB-2]
 gi|219541185|gb|ACL22924.1| Sigma 54 interacting domain protein [Desulfitobacterium hafniense
           DCB-2]
          Length = 652

 Score = 39.3 bits (90), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 89/230 (38%), Gaps = 56/230 (24%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           +LRP+ +EE  GQ      L      AK       H++  GPPG+GKT+ A+V    +  
Sbjct: 189 VLRPQAVEEIIGQEVPMQFL-----LAKLATPYPQHIIIYGPPGVGKTSAARVALEAVKK 243

Query: 81  NFRS---TSGPVIAKAGD---------LAALLTNLED-------RD-------------- 107
           N  S    S P +   G             LL ++ D       RD              
Sbjct: 244 NVNSPFAESAPFVEVDGTTLRWDPRDVTNPLLGSVHDPIYQGAKRDLAETGIPEPKLGLV 303

Query: 108 ------VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG-EGPSARSVKINLSR------- 153
                 +LFIDEI  +  ++   L   +ED ++        P+   V + + +       
Sbjct: 304 SDAHGGILFIDEIGEMDPVLLNKLLKVLEDKRVAFESAYYDPNDPQVPLYIKKLFEEGAP 363

Query: 154 --FTLIAATTRVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
             F LI ATTR     NP L+ R G  I  N  E  D++ IV + A+  G
Sbjct: 364 ADFVLIGATTRDPRELNPALRSRCG-EIYFNPLEPRDIQHIVSQAAQKLG 412


>gi|325117386|emb|CBZ52938.1| putative cell division protein [Neospora caninum Liverpool]
          Length = 959

 Score = 39.3 bits (90), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV +   SG
Sbjct: 115 VLLVGPPGTGKTALARAVATEAGVPYFYASG 145


>gi|325091276|gb|EGC44586.1| conserved hypothetical protein [Ajellomyces capsulatus H88]
          Length = 928

 Score = 39.3 bits (90), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 68/163 (41%), Gaps = 33/163 (20%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTS-GPVIAKA----------GDLAALLTNLED 105
           +L VGPPG GKT+LA+ VA  LG  F   S G V  +A            +  L+ N   
Sbjct: 479 MLLVGPPGTGKTSLAKSVATALGRKFHRISLGGVRDEAEIRGHRRTYVAAMPGLIVNGLK 538

Query: 106 R-----DVLFIDEIHRL---------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINL 151
           +      V  +DEI ++         S  + E+L P       D  +       ++ I+L
Sbjct: 539 KVGVANPVFLLDEIDKVVGSNFHGDPSAAMLEVLDPEQNHSFTDHYI-------NIPIDL 591

Query: 152 SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           S+   IA    +  +  PL DR    I+L+ Y   + K I  R
Sbjct: 592 SKVLFIATANSLDTIPPPLLDRMET-IQLSGYTTVEKKHIASR 633


>gi|317497135|ref|ZP_07955461.1| ATP-dependent metallopeptidase HflB [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316895545|gb|EFV17701.1| ATP-dependent metallopeptidase HflB [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 615

 Score = 39.3 bits (90), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E  V F S SG
Sbjct: 200 VLLVGPPGTGKTLLAKAVAGEANVPFFSISG 230


>gi|314916066|gb|EFS79897.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL005PA4]
          Length = 717

 Score = 39.3 bits (90), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 203 VLLYGPPGTGKTLLARAVAGEAGVPFFSISG 233


>gi|312793143|ref|YP_004026066.1| ATP-dependent protease la [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312180283|gb|ADQ40453.1| ATP-dependent protease La [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 775

 Score = 39.3 bits (90), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLA 71
           S E  DI++++    E+  G  +    +  +I   K + +    +L  VGPPG+GKT++A
Sbjct: 309 SDEKIDINVVKKVLDEDHYGLTKVKERILEYIAVRKLKNDMKGPILCLVGPPGVGKTSIA 368

Query: 72  QVVARELGVNF 82
           + +AR L  N+
Sbjct: 369 KSIARALNRNY 379


>gi|311070716|ref|YP_003975639.1| hypothetical protein BATR1942_18955 [Bacillus atrophaeus 1942]
 gi|310871233|gb|ADP34708.1| hypothetical protein BATR1942_18955 [Bacillus atrophaeus 1942]
          Length = 639

 Score = 39.3 bits (90), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+  A E GV F S SG       V   A  +  L  N +     +
Sbjct: 197 VLLVGPPGTGKTLLARASAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCL 256

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 257 IFIDEI 262


>gi|310794958|gb|EFQ30419.1| ATPase [Glomerella graminicola M1.001]
          Length = 437

 Score = 39.3 bits (90), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 8/78 (10%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRS-TSGPVIAKA-GDLAALLTNL-- 103
           + + +A   +L  GPPG GK+ LA+ VA E    F S +S  +++K  G+   L+  L  
Sbjct: 162 QGKRQAWKGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESERLVKALFS 221

Query: 104 ---EDR-DVLFIDEIHRL 117
              E++  VLFIDEI  L
Sbjct: 222 MARENKPSVLFIDEIDAL 239


>gi|299830570|ref|YP_003735018.1| cell division protein FtsH-like protein [Durinskia baltica]
 gi|297384934|gb|ADI40233.1| cell division protein FtsH-like protein [Durinskia baltica]
          Length = 625

 Score = 39.3 bits (90), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E  V F S +G
Sbjct: 218 VLLVGPPGTGKTLLAKAIANEASVPFYSVAG 248


>gi|303311303|ref|XP_003065663.1| ATP-dependent metalloprotease FtsH family protein [Coccidioides
           posadasii C735 delta SOWgp]
 gi|240105325|gb|EER23518.1| ATP-dependent metalloprotease FtsH family protein [Coccidioides
           posadasii C735 delta SOWgp]
          Length = 811

 Score = 39.3 bits (90), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F   SG
Sbjct: 383 VLLVGPPGTGKTLLARAVAGEAGVPFFYMSG 413


>gi|238014828|gb|ACR38449.1| unknown [Zea mays]
          Length = 391

 Score = 39.3 bits (90), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 64/138 (46%), Gaps = 19/138 (13%)

Query: 57  VLFVGPPGLGKTTLAQVVARELG---VNFRSTS--GPVIAKAGDLAALLTNLEDR---DV 108
           VL  GPPG GKT LA+ +ARE G   +N R ++        A  L + + +L  +    +
Sbjct: 123 VLLYGPPGTGKTMLAKAIARESGAVFINVRISNLMSKWFGDAQKLVSAVFSLAHKLQPAI 182

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLM-VGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           +FIDE+           + AM + + + M + +G +        +R  ++AAT R   L 
Sbjct: 183 IFIDEVDSFLGQRRTTDHEAMTNMKTEFMSLWDGFTTDQN----ARVMVLAATNRPSELD 238

Query: 168 NPLQDRF------GIPIR 179
             +  RF      GIP++
Sbjct: 239 EAILRRFTQIFEIGIPVQ 256


>gi|227540928|ref|ZP_03970977.1| cell division protein FtsH [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227183188|gb|EEI64160.1| cell division protein FtsH [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 776

 Score = 39.3 bits (90), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT +A+ VA E GV F S SG
Sbjct: 214 VLLYGPPGTGKTLMARAVAGEAGVPFYSISG 244


>gi|225682684|gb|EEH20968.1| cell division protease ftsH [Paracoccidioides brasiliensis Pb03]
          Length = 541

 Score = 39.3 bits (90), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F   SG
Sbjct: 109 VLLVGPPGTGKTLLARAVAGEAGVPFFYMSG 139


>gi|238567752|ref|XP_002386306.1| hypothetical protein MPER_15500 [Moniliophthora perniciosa FA553]
 gi|215437859|gb|EEB87236.1| hypothetical protein MPER_15500 [Moniliophthora perniciosa FA553]
          Length = 98

 Score = 39.3 bits (90), Expect = 0.82,   Method: Composition-based stats.
 Identities = 20/34 (58%), Positives = 22/34 (64%), Gaps = 1/34 (2%)

Query: 61 GPPGLGKTTLAQVVARELGVNFRSTSGP-VIAKA 93
          GPPG GKT LA+ VA   G NF S  GP V+ KA
Sbjct: 40 GPPGCGKTLLAKAVANASGANFISVKGPEVLNKA 73


>gi|226492916|ref|NP_001148581.1| replication factor C subunit 2 [Zea mays]
 gi|195620566|gb|ACG32113.1| replication factor C subunit 2 [Zea mays]
          Length = 339

 Score = 39.3 bits (90), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RPR +++   Q E    L   ++ A      L H+LF GPPG GKTT A  +A +L
Sbjct: 16 RPRQVKDVAHQEEVIRVLNNTLQTAD-----LPHMLFYGPPGTGKTTTALAIAYQL 66


>gi|195426391|ref|XP_002061318.1| GK20855 [Drosophila willistoni]
 gi|194157403|gb|EDW72304.1| GK20855 [Drosophila willistoni]
          Length = 753

 Score = 39.3 bits (90), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL VGPPG GKT LA+ VA E  V F   +GP
Sbjct: 353 VLLVGPPGTGKTLLARAVAGEANVPFFHAAGP 384


>gi|194017983|ref|ZP_03056590.1| putative Cell division protease FtsH homolog [Bacillus pumilus ATCC
           7061]
 gi|194010320|gb|EDW19895.1| putative Cell division protease FtsH homolog [Bacillus pumilus ATCC
           7061]
          Length = 586

 Score = 39.3 bits (90), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+  A E GV F S SG       V   A  +  L  N +     +
Sbjct: 149 VLLVGPPGTGKTLLARASAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCL 208

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 209 IFIDEI 214


>gi|225163994|ref|ZP_03726282.1| DNA-directed DNA polymerase [Opitutaceae bacterium TAV2]
 gi|224801408|gb|EEG19716.1| DNA-directed DNA polymerase [Opitutaceae bacterium TAV2]
          Length = 388

 Score = 39.3 bits (90), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 8/66 (12%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
          RP+T ++  GQ      LK  I    AR       LFVGP G GKT+ A++ A+ L    
Sbjct: 14 RPQTFDDVVGQDHVVRTLKNAI----ARNRIAHAYLFVGPRGTGKTSTARIFAKALNC-- 67

Query: 83 RSTSGP 88
            T GP
Sbjct: 68 --TDGP 71


>gi|148264775|ref|YP_001231481.1| ATP-dependent metalloprotease FtsH [Geobacter uraniireducens Rf4]
 gi|146398275|gb|ABQ26908.1| membrane protease FtsH catalytic subunit [Geobacter uraniireducens
           Rf4]
          Length = 617

 Score = 39.3 bits (90), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL +GPPG GKT LA+ +A E GV F S SG
Sbjct: 196 VLLMGPPGTGKTLLARAIAGEAGVPFFSISG 226


>gi|145343484|ref|XP_001416352.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144576577|gb|ABO94645.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 567

 Score = 39.3 bits (90), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 69/162 (42%), Gaps = 23/162 (14%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHV--------LFVGPPGLGKTTLAQVVARELG 79
           ++  G  E    LK  +E A+   +A+  V        L  GPPG  KT LA+ VA   G
Sbjct: 302 DDVGGLDEVKDRLKEAVEWAEKHPDAMKRVGASPPKGILLYGPPGCSKTMLARAVASASG 361

Query: 80  VNFRSTSGPVIAK--AGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILY---PA 128
            NF S  G  +     GD    +  +  R       V+FIDE+  L+           P+
Sbjct: 362 RNFISIKGSELFSKWVGDSEKAVRAVFSRARTSAPSVIFIDEVDGLAGTRGGGEQGGAPS 421

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           ++D  +  ++GE     S   N+   T++AAT R  L+   L
Sbjct: 422 VQDRVITQLLGEM-DGLSPTTNV---TVVAATNRPDLVDGAL 459


>gi|124024074|ref|YP_001018381.1| cell division protein FtsH2 [Prochlorococcus marinus str. MIT 9303]
 gi|123964360|gb|ABM79116.1| cell division protein FtsH2 [Prochlorococcus marinus str. MIT 9303]
          Length = 615

 Score = 39.3 bits (90), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E  V F S SG
Sbjct: 196 VLLVGPPGTGKTLLAKAVAGEAAVPFFSISG 226


>gi|115936460|ref|XP_001182384.1| PREDICTED: similar to MGC81266 protein [Strongylocentrotus
            purpuratus]
          Length = 1754

 Score = 39.3 bits (90), Expect = 0.82,   Method: Composition-based stats.
 Identities = 16/24 (66%), Positives = 18/24 (75%)

Query: 58   LFVGPPGLGKTTLAQVVARELGVN 81
            L  GPPGLGKTTLA ++AR  G N
Sbjct: 1140 LLCGPPGLGKTTLAHIIARHAGYN 1163


>gi|52842085|ref|YP_095884.1| ATP-dependent protease ATP-binding subunit ClpX [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|52629196|gb|AAU27937.1| ATP-dependent Clp protease, ATP binding subunit ClpX [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
          Length = 426

 Score = 39.3 bits (90), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDV 108
           ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+        D DV
Sbjct: 114 NILLIGPTGSGKTLLAQTLARILNVPFAMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 173

Query: 109 -------LFIDEIHRLS 118
                  ++IDEI ++S
Sbjct: 174 DKAQQGIVYIDEIDKIS 190


>gi|81294202|gb|AAI07951.1| Psmc6 protein [Rattus norvegicus]
          Length = 381

 Score = 39.3 bits (90), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 56/124 (45%), Gaps = 23/124 (18%)

Query: 8   LSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV--------L 58
           L  N+S ED  ++S        E  G  E    L+  IE      E    V        L
Sbjct: 110 LVYNMSHEDPGNVSY------SEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCL 163

Query: 59  FVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA-GDLAALLTNLED--RD----VLF 110
             GPPG GKT LA+ VA +L  NF +  S  ++ K  G+ A L+  + +  RD    ++F
Sbjct: 164 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIF 223

Query: 111 IDEI 114
           +DEI
Sbjct: 224 MDEI 227


>gi|45361531|ref|NP_989342.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Xenopus
           (Silurana) tropicalis]
 gi|39850228|gb|AAH64227.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Xenopus
           (Silurana) tropicalis]
 gi|89266829|emb|CAJ83423.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Xenopus
           (Silurana) tropicalis]
          Length = 389

 Score = 39.3 bits (90), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 56/124 (45%), Gaps = 23/124 (18%)

Query: 8   LSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV--------L 58
           L  N+S ED  ++S        E  G  E    L+  IE      E    V        L
Sbjct: 118 LVYNMSHEDPGNVSY------SEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCL 171

Query: 59  FVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA-GDLAALLTNLED--RD----VLF 110
             GPPG GKT LA+ VA +L  NF +  S  ++ K  G+ A L+  + +  RD    ++F
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIF 231

Query: 111 IDEI 114
           +DEI
Sbjct: 232 MDEI 235


>gi|17232268|ref|NP_488816.1| cell division protein [Nostoc sp. PCC 7120]
 gi|81769738|sp|Q8YMZ8|FTSH_ANASP RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|17133913|dbj|BAB76475.1| cell division protein [Nostoc sp. PCC 7120]
          Length = 656

 Score = 39.3 bits (90), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ +A E  V F S SG       V   A  +  L    +D    +
Sbjct: 235 VLLVGPPGTGKTLLAKAIAGEAAVPFFSISGSEFVEMFVGVGASRVRDLFKKAKDNAPCL 294

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 295 IFIDEI 300


>gi|88810608|ref|ZP_01125865.1| ATP-dependent protease ATP-binding subunit [Nitrococcus mobilis
           Nb-231]
 gi|88792238|gb|EAR23348.1| ATP-dependent protease ATP-binding subunit [Nitrococcus mobilis
           Nb-231]
          Length = 425

 Score = 39.3 bits (90), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 17/92 (18%)

Query: 44  IEAAKARAE---ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALL 100
           +EA+ +++E   +  ++L +GP G GKT LA+ +AR L V F       + +AG +   +
Sbjct: 101 MEASHSKSEVELSKSNILLIGPTGSGKTLLAETLARLLDVPFTIADATTLTEAGYVGEDV 160

Query: 101 TNL-------EDRDV-------LFIDEIHRLS 118
            N+        D DV       ++IDEI ++S
Sbjct: 161 ENIIQKLLQKCDYDVEKAQQGIVYIDEIDKIS 192


>gi|194332970|ref|YP_002014830.1| ATP-dependent metalloprotease FtsH [Prosthecochloris aestuarii DSM
           271]
 gi|194310788|gb|ACF45183.1| ATP-dependent metalloprotease FtsH [Prosthecochloris aestuarii DSM
           271]
          Length = 699

 Score = 39.3 bits (90), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 27  LEEFTGQV-EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRST 85
           L+E  G+V E    LK   +  K   +    VL VGPPG GKT LA+ VA E  V F S 
Sbjct: 202 LDEAKGEVMEVVDFLKDPKKYTKLGGKLPKGVLLVGPPGTGKTLLAKAVAGEADVPFFSI 261

Query: 86  SG 87
           SG
Sbjct: 262 SG 263


>gi|332364177|gb|EGJ41954.1| cell division protein FtsH [Streptococcus sanguinis SK49]
          Length = 659

 Score = 39.3 bits (90), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL-EDRD-----V 108
           VL  GPPG GKT LA+ VA E GV F S SG    +   G  A+ + +L ED       +
Sbjct: 224 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRSLFEDAKKAAPAI 283

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 284 IFIDEI 289


>gi|332295575|ref|YP_004437498.1| ATP-dependent metalloprotease FtsH [Thermodesulfobium narugense DSM
           14796]
 gi|332178678|gb|AEE14367.1| ATP-dependent metalloprotease FtsH [Thermodesulfobium narugense DSM
           14796]
          Length = 627

 Score = 39.3 bits (90), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E  V F S SG       V   A  +  L    +++   +
Sbjct: 192 VLLVGPPGCGKTLLARAVAGEAKVPFFSISGSDFVEMFVGVGASRVRDLFEQAKNQSPCI 251

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 252 IFIDEI 257


>gi|328954112|ref|YP_004371446.1| ATP-dependent metalloprotease FtsH [Desulfobacca acetoxidans DSM
           11109]
 gi|328454436|gb|AEB10265.1| ATP-dependent metalloprotease FtsH [Desulfobacca acetoxidans DSM
           11109]
          Length = 625

 Score = 39.3 bits (90), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 43/89 (48%), Gaps = 7/89 (7%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAK--ARAEAL-----DHVL 58
           GL+S   S+    +      T ++  G  EA   L+  IE  +   + +AL       VL
Sbjct: 154 GLMSIGKSKAKVYVEDETKITFKDVAGVEEAIEELQEVIEFLQNPEKFQALGGKIPKGVL 213

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSG 87
            VGPPG GKT L + VA E GV F S +G
Sbjct: 214 LVGPPGTGKTLLGRAVAGEAGVPFLSLTG 242


>gi|327467725|gb|EGF13219.1| cell division protein FtsH [Streptococcus sanguinis SK330]
          Length = 659

 Score = 39.3 bits (90), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 224 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISG 254


>gi|325689367|gb|EGD31373.1| cell division protein FtsH [Streptococcus sanguinis SK115]
          Length = 659

 Score = 39.3 bits (90), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL-EDRD-----V 108
           VL  GPPG GKT LA+ VA E GV F S SG    +   G  A+ + +L ED       +
Sbjct: 224 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRSLFEDAKKAAPAI 283

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 284 IFIDEI 289


>gi|322377894|ref|ZP_08052382.1| cell division protein FtsH [Streptococcus sp. M334]
 gi|321281070|gb|EFX58082.1| cell division protein FtsH [Streptococcus sp. M334]
          Length = 652

 Score = 39.3 bits (90), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 223 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISG 253


>gi|322392413|ref|ZP_08065873.1| cell division protein FtsH [Streptococcus peroris ATCC 700780]
 gi|321144405|gb|EFX39806.1| cell division protein FtsH [Streptococcus peroris ATCC 700780]
          Length = 652

 Score = 39.3 bits (90), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 223 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISG 253


>gi|317013731|gb|ADU81167.1| ATP-dependent zinc metallopeptidase [Helicobacter pylori
           Gambia94/24]
          Length = 550

 Score = 39.3 bits (90), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDR--DV 108
           VL VGPPG+GKT +A+ +A E  V F   SG   ++      A  +  L  + +     +
Sbjct: 198 VLLVGPPGVGKTMIAKALASEARVPFFYESGSAFSQIYVGAGAKKVHELFMHAKKHAPSI 257

Query: 109 LFIDEIHRL 117
           +FIDEI  L
Sbjct: 258 IFIDEIDAL 266


>gi|314959094|gb|EFT03196.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL002PA1]
          Length = 717

 Score = 39.3 bits (90), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 203 VLLYGPPGTGKTLLARAVAGEAGVPFFSISG 233


>gi|312622796|ref|YP_004024409.1| ATP-dependent protease la [Caldicellulosiruptor kronotskyensis
           2002]
 gi|312203263|gb|ADQ46590.1| ATP-dependent protease La [Caldicellulosiruptor kronotskyensis
           2002]
          Length = 775

 Score = 39.3 bits (90), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLA 71
           S E  DI++++    E+  G  +    +  +I   K + +    +L  VGPPG+GKT++A
Sbjct: 309 SDEKIDINVVKKVLDEDHYGLTKVKERILEYIAVRKLKNDMKGPILCLVGPPGVGKTSIA 368

Query: 72  QVVARELGVNF 82
           + +AR L  N+
Sbjct: 369 KSIARALNRNY 379


>gi|312127982|ref|YP_003992856.1| ATP-dependent protease la [Caldicellulosiruptor hydrothermalis 108]
 gi|311778001|gb|ADQ07487.1| ATP-dependent protease La [Caldicellulosiruptor hydrothermalis 108]
          Length = 775

 Score = 39.3 bits (90), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLA 71
           S E  DI++++    E+  G  +    +  +I   K + +    +L  VGPPG+GKT++A
Sbjct: 309 SDEKIDINVVKKVLDEDHYGLTKVKERILEYIAVRKLKNDMKGPILCLVGPPGVGKTSIA 368

Query: 72  QVVARELGVNF 82
           + +AR L  N+
Sbjct: 369 KSIARALNRNY 379


>gi|308446478|ref|XP_003087188.1| hypothetical protein CRE_23295 [Caenorhabditis remanei]
 gi|308260041|gb|EFP03994.1| hypothetical protein CRE_23295 [Caenorhabditis remanei]
          Length = 436

 Score = 39.3 bits (90), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------ED 105
           A  ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+        D
Sbjct: 111 AKSNILLIGPTGSGKTLLAQTLARLLDVPFAMADATTLTEAGYVGEDVENIIQKLLQKAD 170

Query: 106 RDV-------LFIDEIHRLS 118
            DV       ++IDEI +++
Sbjct: 171 YDVEKAQKGIIYIDEIDKIT 190


>gi|296195629|ref|XP_002745473.1| PREDICTED: spermatogenesis-associated protein 5-like, partial
           [Callithrix jacchus]
          Length = 321

 Score = 39.3 bits (90), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 16/32 (50%), Positives = 21/32 (65%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  GPPG  KT +A+ +A E G+NF +  GP
Sbjct: 92  VLLYGPPGCSKTMIAKALANESGLNFLAIKGP 123


>gi|282878162|ref|ZP_06286959.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella
           buccalis ATCC 35310]
 gi|281299740|gb|EFA92112.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella
           buccalis ATCC 35310]
          Length = 415

 Score = 39.3 bits (90), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           +++ VG  G GKT LA+ +AR L V F      V  +AG    D+ ++L+ L        
Sbjct: 115 NIIMVGSTGTGKTLLAKTIARLLDVPFTIVDATVFTEAGYVGEDVESILSRLLQVADYDV 174

Query: 104 --EDRDVLFIDEIHRLS 118
              +R ++FIDEI +++
Sbjct: 175 PAAERGIVFIDEIDKIA 191


>gi|296088871|emb|CBI38383.3| unnamed protein product [Vitis vinifera]
          Length = 880

 Score = 39.3 bits (90), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 9/67 (13%)

Query: 57  VLFVGPPGLGKTTLAQVVARELG-----VNFRS--TSGPVIAKAGDLAALLTNLEDR--D 107
           +L  GPPGLGKTTLA V A+  G     +N     +S  + AK  D+  + + + D   +
Sbjct: 421 LLLCGPPGLGKTTLAHVAAKHCGYRVVEINASDDRSSSTIEAKILDVVQMNSVMADSKPN 480

Query: 108 VLFIDEI 114
            L IDEI
Sbjct: 481 CLVIDEI 487


>gi|227877365|ref|ZP_03995436.1| ATP-dependent protease ATP-binding subunit [Lactobacillus crispatus
           JV-V01]
 gi|227863033|gb|EEJ70481.1| ATP-dependent protease ATP-binding subunit [Lactobacillus crispatus
           JV-V01]
          Length = 429

 Score = 39.3 bits (90), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 14/83 (16%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD--------LAALLTNLE--- 104
           ++  +GP G GKT LAQ +AR L V F       + +AG         L  LL N +   
Sbjct: 119 NIAMIGPTGSGKTYLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDL 178

Query: 105 ---DRDVLFIDEIHRLSIIVEEI 124
               R +++IDEI ++S   E +
Sbjct: 179 ERAQRGIIYIDEIDKISKKSENV 201


>gi|226951342|ref|ZP_03821806.1| ATPase [Acinetobacter sp. ATCC 27244]
 gi|294650797|ref|ZP_06728145.1| methanol dehydrogenase regulatory family protein [Acinetobacter
           haemolyticus ATCC 19194]
 gi|226837864|gb|EEH70247.1| ATPase [Acinetobacter sp. ATCC 27244]
 gi|292823312|gb|EFF82167.1| methanol dehydrogenase regulatory family protein [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 333

 Score = 39.3 bits (90), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 12/88 (13%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAAL-LTNLEDR-------- 106
           HVLF   PGLGKTTLA  +AR  G++F+         A D+  + + N ++         
Sbjct: 74  HVLFEDLPGLGKTTLASALARLAGLHFQRIQFTNDMLASDVIGINIFNQKEHVFEFKKGP 133

Query: 107 ---DVLFIDEIHRLSIIVEEILYPAMED 131
               +L  DEI+R S   +  L  AME+
Sbjct: 134 VFTQILLGDEINRCSPKTQSALLEAMEE 161


>gi|224534150|ref|ZP_03674730.1| cell division protein FtsH [Borrelia spielmanii A14S]
 gi|224514575|gb|EEF84889.1| cell division protein FtsH [Borrelia spielmanii A14S]
          Length = 639

 Score = 39.3 bits (90), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 7/69 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ E    L+  +E         K  A+    VL VG PG GKT LA+ VA E 
Sbjct: 170 TFKDVAGQEEVKQELREVVEFLKNPKKFEKIGAKIPKGVLLVGSPGTGKTLLAKAVAGEA 229

Query: 79  GVNFRSTSG 87
           GV+F   SG
Sbjct: 230 GVSFFHMSG 238


>gi|168030360|ref|XP_001767691.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162681011|gb|EDQ67442.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 338

 Score = 39.3 bits (90), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RPR +++   Q E    L   +E        L H+LF GPPG GKTT A  +  +L
Sbjct: 16 RPRKVKDVAHQEEVVRTLTNTLETGN-----LPHLLFYGPPGTGKTTTALAICHQL 66


>gi|162455574|ref|YP_001617941.1| putative membrane bound zinc metallopeptidase [Sorangium cellulosum
           'So ce 56']
 gi|310943108|sp|A9EXK6|FTSH4_SORC5 RecName: Full=ATP-dependent zinc metalloprotease FtsH 4
 gi|161166156|emb|CAN97461.1| putative membrane bound zinc metallopeptidase [Sorangium cellulosum
           'So ce 56']
          Length = 648

 Score = 39.3 bits (90), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL +GPPG GKT LA+ +A E GV F S SG
Sbjct: 201 VLMMGPPGTGKTLLARAIAGEAGVPFFSISG 231


>gi|127513435|ref|YP_001094632.1| ATP-dependent protease ATP-binding subunit [Shewanella loihica
           PV-4]
 gi|166215203|sp|A3QFX5|CLPX_SHELP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|126638730|gb|ABO24373.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella
           loihica PV-4]
          Length = 426

 Score = 39.3 bits (90), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LA+ +AR L V F       + +AG +   + N+            
Sbjct: 115 NILLIGPTGSGKTLLAETLARFLNVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 174

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 175 EKAQRGIVYIDEIDKIS 191


>gi|119904632|ref|XP_001249863.1| PREDICTED: katanin p60 subunit A-like 1, partial [Bos taurus]
          Length = 436

 Score = 39.3 bits (90), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 21/34 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           VL VGPPG GKT LA+ VA E G  F + S   +
Sbjct: 190 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTL 223


>gi|222056505|ref|YP_002538867.1| ATP-dependent metalloprotease FtsH [Geobacter sp. FRC-32]
 gi|221565794|gb|ACM21766.1| ATP-dependent metalloprotease FtsH [Geobacter sp. FRC-32]
          Length = 614

 Score = 39.3 bits (90), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL +GPPG GKT LA+ +A E GV F S SG
Sbjct: 196 VLLMGPPGTGKTLLARAIAGEAGVPFFSISG 226


>gi|89897776|ref|YP_521263.1| hypothetical protein DSY5030 [Desulfitobacterium hafniense Y51]
 gi|89337224|dbj|BAE86819.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 623

 Score = 39.3 bits (90), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 89/230 (38%), Gaps = 56/230 (24%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           +LRP+ +EE  GQ      L      AK       H++  GPPG+GKT+ A+V    +  
Sbjct: 160 VLRPQAVEEIIGQEVPMQFL-----LAKLATPYPQHIIIYGPPGVGKTSAARVALEAVKK 214

Query: 81  NFRS---TSGPVIAKAGD---------LAALLTNLED-------RD-------------- 107
           N  S    S P +   G             LL ++ D       RD              
Sbjct: 215 NVNSPFAESAPFVEVDGTTLRWDPRDVTNPLLGSVHDPIYQGAKRDLAETGIPEPKLGLV 274

Query: 108 ------VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG-EGPSARSVKINLSR------- 153
                 +LFIDEI  +  ++   L   +ED ++        P+   V + + +       
Sbjct: 275 SDAHGGILFIDEIGEMDPVLLNKLLKVLEDKRVAFESAYYDPNDPQVPLYIKKLFEEGAP 334

Query: 154 --FTLIAATTRVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
             F LI ATTR     NP L+ R G  I  N  E  D++ IV + A+  G
Sbjct: 335 ADFVLIGATTRDPRELNPALRSRCG-EIYFNPLEPRDIQHIVSQAAQKLG 383


>gi|28175479|gb|AAH43044.1| Psmc6 protein [Mus musculus]
          Length = 390

 Score = 39.3 bits (90), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 56/124 (45%), Gaps = 23/124 (18%)

Query: 8   LSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV--------L 58
           L  N+S ED  ++S        E  G  E    L+  IE      E    V        L
Sbjct: 119 LVYNMSHEDPGNVSY------SEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCL 172

Query: 59  FVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA-GDLAALLTNLED--RD----VLF 110
             GPPG GKT LA+ VA +L  NF +  S  ++ K  G+ A L+  + +  RD    ++F
Sbjct: 173 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIF 232

Query: 111 IDEI 114
           +DEI
Sbjct: 233 MDEI 236


>gi|21228802|ref|NP_634724.1| transposase [Methanosarcina mazei Go1]
 gi|20907320|gb|AAM32396.1| Transposase [Methanosarcina mazei Go1]
          Length = 265

 Score = 39.3 bits (90), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 11/102 (10%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAKAR-AEALDHVLFVGPPGLGKTTLA-----QVVARE 77
            + LEEF  + ++  N KV  + A  R     ++++ +GPPG+GK+ LA     + V   
Sbjct: 71  KKMLEEFDFEFQSSINKKVIEDLATLRFVHNAENIVLLGPPGVGKSHLAIALGIEAVKAG 130

Query: 78  LGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEI 114
           + V+F +T        +  + G L   + +L    VL IDEI
Sbjct: 131 ISVHFTNTGNLIERLKIANREGILEKKIRDLMKFKVLIIDEI 172


>gi|116747494|ref|YP_844181.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Syntrophobacter fumaroxidans MPOB]
 gi|116696558|gb|ABK15746.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Syntrophobacter fumaroxidans MPOB]
          Length = 776

 Score = 39.3 bits (90), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 33/82 (40%), Positives = 45/82 (54%), Gaps = 13/82 (15%)

Query: 10  RNVSQEDADISLLRPRTL-EEFTGQVEACSN-LKVFIEAAK-ARA------EALDHVLFV 60
           R+VS  D     LR  +L EE  GQV      + V ++A K +RA        +   LF+
Sbjct: 445 RSVSASDQ----LRLHSLDEELKGQVFGQDGAIDVLVKAIKRSRAGLRIPERPIGSFLFI 500

Query: 61  GPPGLGKTTLAQVVARELGVNF 82
           GP G+GKT +A+ +AR LGVNF
Sbjct: 501 GPTGVGKTEVAKQLARILGVNF 522


>gi|145218956|ref|YP_001129665.1| ATP-dependent metalloprotease FtsH [Prosthecochloris vibrioformis
           DSM 265]
 gi|145205120|gb|ABP36163.1| membrane protease FtsH catalytic subunit [Chlorobium
           phaeovibrioides DSM 265]
          Length = 701

 Score = 39.3 bits (90), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ VA E  V F S SG       V   A  +  L    +++   +
Sbjct: 236 VLLVGPPGTGKTLLAKAVAGEADVPFFSISGSDFVEMFVGVGAARVRDLFKQAKEKAPCI 295

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 296 IFIDEI 301


>gi|223933448|ref|ZP_03625433.1| ATP-dependent metalloprotease FtsH [Streptococcus suis 89/1591]
 gi|302023122|ref|ZP_07248333.1| cell division protease FtsH [Streptococcus suis 05HAS68]
 gi|223897886|gb|EEF64262.1| ATP-dependent metalloprotease FtsH [Streptococcus suis 89/1591]
          Length = 656

 Score = 39.3 bits (90), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 224 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISG 254


>gi|322706678|gb|EFY98258.1| ATP-dependent protease La [Metarhizium anisopliae ARSEF 23]
          Length = 1124

 Score = 39.3 bits (90), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 79/204 (38%), Gaps = 43/204 (21%)

Query: 43  FIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA---- 97
           FI   K R      +L FVGPPG+GKT++ + +AR L   +   S   +    ++     
Sbjct: 585 FIAVGKLRGTVEGKILCFVGPPGVGKTSIGKSIARALNREYYRFSVGGLTDVAEIKGHRR 644

Query: 98  ------------ALLTNLEDRDVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLM 137
                       AL     +  ++ IDE+ ++        S  + E+L P      LD  
Sbjct: 645 TYVGALPGRIIQALKKCQTENPLILIDEVDKIGRGYQGDPSSALLELLDPEQNSSFLDHY 704

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR--- 194
           +        V ++LS+   +        +  PL DR  + I L+ Y  ++ K I      
Sbjct: 705 M-------DVPVDLSKVLFVCTANMTDTIPRPLLDRMEL-ITLSGYVADEKKAIANTYLA 756

Query: 195 -------GAKLTGLAVTDEAACEI 211
                  G K   + +TDEA  E+
Sbjct: 757 PAAKDAAGLKDANVNLTDEAVEEL 780


>gi|307711228|ref|ZP_07647650.1| ATP-dependent metallopeptidase HflB [Streptococcus mitis SK321]
 gi|307617190|gb|EFN96368.1| ATP-dependent metallopeptidase HflB [Streptococcus mitis SK321]
          Length = 652

 Score = 39.3 bits (90), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 223 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISG 253


>gi|294651551|ref|ZP_06728860.1| ATP-dependent Clp protease ATP-binding subunit [Acinetobacter
           haemolyticus ATCC 19194]
 gi|292822574|gb|EFF81468.1| ATP-dependent Clp protease ATP-binding subunit [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 436

 Score = 39.3 bits (90), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------ED 105
           A  ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+        D
Sbjct: 110 AKSNILLIGPTGSGKTLLAQTLARLLDVPFAMADATTLTEAGYVGEDVENIVQKLLQKAD 169

Query: 106 RDV-------LFIDEIHRLS 118
            DV       ++IDEI +++
Sbjct: 170 YDVEKAQKGIIYIDEIDKIT 189


>gi|289571965|ref|ZP_06452192.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
          tuberculosis T17]
 gi|289545719|gb|EFD49367.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
          tuberculosis T17]
          Length = 409

 Score = 39.3 bits (90), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 6/68 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
          RP +  E  GQ    + L V ++A +     ++H  LF GP G GKT+ A+++AR L   
Sbjct: 8  RPASFAEVVGQEHVTAPLSVALDAGR-----INHAYLFSGPRGCGKTSSARILARSLNCA 62

Query: 82 FRSTSGPV 89
             T+ P 
Sbjct: 63 QGPTANPC 70


>gi|294940484|ref|XP_002782801.1| hypothetical protein Pmar_PMAR025798 [Perkinsus marinus ATCC 50983]
 gi|239894791|gb|EER14596.1| hypothetical protein Pmar_PMAR025798 [Perkinsus marinus ATCC 50983]
          Length = 288

 Score = 39.3 bits (90), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 27/40 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDL 96
           +L VGPPG GKT++A+ +A+ LG  F   S   ++ AG+L
Sbjct: 222 LLLVGPPGCGKTSIAESIAKALGRRFEMVSLGGLSDAGEL 261


>gi|219129570|ref|XP_002184958.1| vacuolar protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217403453|gb|EEC43405.1| vacuolar protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 422

 Score = 39.3 bits (90), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 10/71 (14%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRS-TSGPVIAK-AGDLAALLTNLED--------R 106
           +L  GPPG GK+ LA+ VA E    F S +S  +I+K  G+   L+ NL +        R
Sbjct: 160 ILLYGPPGTGKSYLAKAVATEADSTFFSVSSADLISKWQGESERLVRNLFEMARESPGSR 219

Query: 107 DVLFIDEIHRL 117
            ++FIDE+  L
Sbjct: 220 AIIFIDEVDSL 230


>gi|254382768|ref|ZP_04998125.1| ATP-dependent protease ATP-binding subunit [Streptomyces sp. Mg1]
 gi|194341670|gb|EDX22636.1| ATP-dependent protease ATP-binding subunit [Streptomyces sp. Mg1]
          Length = 428

 Score = 39.3 bits (90), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 59/133 (44%), Gaps = 35/133 (26%)

Query: 21  LLRPRTLEEF-----TGQVEACSNLKVFIE------------AAKARAEALD----HVLF 59
           L +PR + EF      GQ  A   L V +              A+ R +A++    ++L 
Sbjct: 61  LPKPREIYEFLESYVVGQEPAKKALSVAVYNHYKRVQAGENGGAQGRDDAIELAKSNILL 120

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDV---- 108
           +GP G GKT LAQ +AR L V F       + +AG +   + N+        D DV    
Sbjct: 121 LGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKKAE 180

Query: 109 ---LFIDEIHRLS 118
              ++IDEI +++
Sbjct: 181 TGIIYIDEIDKVA 193


>gi|163751870|ref|ZP_02159084.1| ATP-dependent protease ATP-binding subunit [Shewanella benthica
           KT99]
 gi|161328220|gb|EDP99384.1| ATP-dependent protease ATP-binding subunit [Shewanella benthica
           KT99]
          Length = 425

 Score = 39.3 bits (90), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 20/95 (21%)

Query: 38  SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA 97
           SN K  +E  K+      ++L +GP G GKT LA+  AR L V F       + +AG + 
Sbjct: 103 SNHKDGVELGKS------NILLIGPTGSGKTLLAETFARFLDVPFTMADATTLTEAGYVG 156

Query: 98  ALLTNL--------------EDRDVLFIDEIHRLS 118
             + N+                R +++IDEI ++S
Sbjct: 157 EDVENIIQKLLQKCDYDVEKAQRGIVYIDEIDKIS 191


>gi|163786487|ref|ZP_02180935.1| ATP-dependent protease ATP-binding subunit [Flavobacteriales
           bacterium ALC-1]
 gi|159878347|gb|EDP72403.1| ATP-dependent protease ATP-binding subunit [Flavobacteriales
           bacterium ALC-1]
          Length = 410

 Score = 39.3 bits (90), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLT--------NL 103
           +++ VG  G GKT +A+ +AR L V        V+ +AG    D+ ++LT        NL
Sbjct: 109 NIIMVGQTGTGKTLMAKTIARMLNVPLAIVDATVLTEAGYVGEDVESILTRLLQAADYNL 168

Query: 104 E--DRDVLFIDEIHRLS 118
           E   R ++FIDEI +++
Sbjct: 169 EKAQRGIVFIDEIDKIA 185


>gi|157374681|ref|YP_001473281.1| ATP-dependent protease ATP-binding subunit [Shewanella sediminis
           HAW-EB3]
 gi|189044153|sp|A8FTI0|CLPX_SHESH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|157317055|gb|ABV36153.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella
           sediminis HAW-EB3]
          Length = 425

 Score = 39.3 bits (90), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LA+ +AR L V F       + +AG +   + N+            
Sbjct: 115 NILLIGPTGSGKTLLAETLARFLNVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 174

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDEI ++S
Sbjct: 175 EKAQRGIVYIDEIDKIS 191


>gi|153815238|ref|ZP_01967906.1| hypothetical protein RUMTOR_01472 [Ruminococcus torques ATCC 27756]
 gi|145847497|gb|EDK24415.1| hypothetical protein RUMTOR_01472 [Ruminococcus torques ATCC 27756]
          Length = 595

 Score = 39.3 bits (90), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 183 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISG 213


>gi|125716901|ref|YP_001034034.1| membrane ATPase FtsH, degrades sigma32 (integral membrane
           cell-division Zn metallo-peptidase) [Streptococcus
           sanguinis SK36]
 gi|323350842|ref|ZP_08086501.1| cell division protein FtsH [Streptococcus sanguinis VMC66]
 gi|125496818|gb|ABN43484.1| Membrane ATPase FtsH, degrades sigma32 (integral membrane
           cell-division Zn metallo-peptidase), putative
           [Streptococcus sanguinis SK36]
 gi|322123016|gb|EFX94719.1| cell division protein FtsH [Streptococcus sanguinis VMC66]
 gi|324989591|gb|EGC21537.1| cell division protein FtsH [Streptococcus sanguinis SK353]
 gi|324991853|gb|EGC23776.1| cell division protein FtsH [Streptococcus sanguinis SK405]
 gi|324996257|gb|EGC28167.1| cell division protein FtsH [Streptococcus sanguinis SK678]
 gi|325698019|gb|EGD39900.1| cell division protein FtsH [Streptococcus sanguinis SK160]
 gi|327458477|gb|EGF04827.1| cell division protein FtsH [Streptococcus sanguinis SK1]
 gi|327463847|gb|EGF10163.1| cell division protein FtsH [Streptococcus sanguinis SK1057]
 gi|327471621|gb|EGF17064.1| cell division protein FtsH [Streptococcus sanguinis SK408]
 gi|327490351|gb|EGF22138.1| cell division protein FtsH [Streptococcus sanguinis SK1058]
 gi|328945187|gb|EGG39342.1| cell division protein FtsH [Streptococcus sanguinis SK1087]
 gi|332359483|gb|EGJ37302.1| cell division protein FtsH [Streptococcus sanguinis SK1056]
 gi|332363619|gb|EGJ41400.1| cell division protein FtsH [Streptococcus sanguinis SK1059]
          Length = 659

 Score = 39.3 bits (90), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 224 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISG 254


>gi|146304791|ref|YP_001192107.1| replicative DNA helicase Mcm [Metallosphaera sedula DSM 5348]
 gi|145703041|gb|ABP96183.1| replicative DNA helicase Mcm [Metallosphaera sedula DSM 5348]
          Length = 686

 Score = 39.3 bits (90), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 79/312 (25%), Positives = 117/312 (37%), Gaps = 84/312 (26%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRS--TSGPVI------------AKAGD--LAAL 99
           HVL +G PG  K+ + Q  AR   V+ RS  T+G                  GD  L A 
Sbjct: 334 HVLIIGDPGTAKSQILQFAAR---VSPRSVYTTGKGATAAGLTAAVVREKNTGDYYLEAG 390

Query: 100 LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL---------------------MV 138
              L D  +  IDEI ++       ++ AME   + +                       
Sbjct: 391 ALVLADGGIAVIDEIDKMREEDRVAIHEAMEQQTVSIAKAGILAKLNARATIIAAGNPKF 450

Query: 139 GEGPSARSVKIN-------LSRFTLI-----AATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           G     R+V  N       LSRF LI        T    L N + D  G     NF  +E
Sbjct: 451 GRYIQERAVAENIELPPTILSRFDLIFILVDKPGTEDQNLANHILDMHGGKEIRNFIPVE 510

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIA-----MRSRG----------TPRIAGRLLRRVRD 231
           DLK  +    K     + +EA   +A     MR +           TPR    L+R    
Sbjct: 511 DLKKYIAFARKFVNPKLNEEAKQLLADFYVEMRRKSSENPSSPILITPRQLEALIRITEA 570

Query: 232 FAEVAHAKTITREIADAA--LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGL 289
           +A +A  +  TRE A+ A  ++R+ ++K+G D                G + I+TI  G 
Sbjct: 571 YARMALRQEATREDAERAINIMRIFLEKVGID-------------VESGSLDIDTIMTG- 616

Query: 290 SEPRDAIEDLIE 301
            +P+ A E +++
Sbjct: 617 -KPKSAREKMVK 627


>gi|21756162|dbj|BAC04829.1| unnamed protein product [Homo sapiens]
          Length = 895

 Score = 39.3 bits (90), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 87/207 (42%), Gaps = 33/207 (15%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLA 71
           S E+ D++  +    E+  G  +    +  FI  ++ R      +L F GPPG+GKT++A
Sbjct: 410 SNENLDLARAQAVLEEDHYGMEDVKKRILEFIAVSQLRGSTQGKILCFYGPPGVGKTSIA 469

Query: 72  QVVARELGVN-FRSTSGP--------------VIAKAGDLAALLTNLEDRD-VLFIDEIH 115
           + +AR L    FR + G               V A  G +   L   +  + ++ IDE+ 
Sbjct: 470 RSIARALNREYFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLILIDEVD 529

Query: 116 RL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           ++        S  + E+L P      LD  +        V ++LS+   I        + 
Sbjct: 530 KIGRGYQGDPSSALLELLDPEQNANFLDHYL-------DVPVDLSKVLFICTANVTDTIP 582

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQR 194
            PL+DR  + I ++ Y  ++   I +R
Sbjct: 583 EPLRDRMEM-INVSGYVAQEKLAIAER 608


>gi|239939577|ref|ZP_04691514.1| hypothetical protein SrosN15_01150 [Streptomyces roseosporus NRRL
           15998]
 gi|239986063|ref|ZP_04706727.1| hypothetical protein SrosN1_02017 [Streptomyces roseosporus NRRL
           11379]
 gi|291443000|ref|ZP_06582390.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
 gi|60650952|gb|AAX31577.1| hypothetical protein [Streptomyces roseosporus NRRL 11379]
 gi|291345947|gb|EFE72851.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
          Length = 1103

 Score = 39.3 bits (90), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 75/164 (45%), Gaps = 42/164 (25%)

Query: 56  HVLFVGPPGLGKTTLAQV---VARELGVNFRSTSGPVIAKAGDLAALL---TNLEDRD-- 107
           H++F GPPG GKTT+A++   +  ELG + RS     +++A DL A +   T ++  +  
Sbjct: 598 HLIFAGPPGTGKTTVARLYGAILAELG-SLRSGHLVEVSRA-DLVAQVVGGTAIKTSETF 655

Query: 108 ------VLFIDEIHRLSII-----------VEEILYPAMEDFQLDLMVGEGPSARSVKIN 150
                 VLFIDE + L+               + L   MED + D++V     +R ++  
Sbjct: 656 QRALGGVLFIDEAYTLTADSGNGGADFGREAVDTLLKLMEDHRDDVVVVAAGYSREMESF 715

Query: 151 LSRFTLIAATTRVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQ 193
           LS              +NP L  RF   +    Y ++DL  I++
Sbjct: 716 LS--------------SNPGLASRFSRTVEFENYSVDDLVAIME 745



 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 91/218 (41%), Gaps = 53/218 (24%)

Query: 17   ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEA-------LDHVLFVGPPGLGKTT 69
            AD  L R   +    G     ++L   I  A+ RA A        +H++F GPPG GKTT
Sbjct: 831  ADDPLTRLGDMIGLAGVKREVADLVNLITTARHRAAAGLPVPTLSNHLVFTGPPGTGKTT 890

Query: 70   LAQV---VARELGVNFRSTSGPVIAKA---------GDLAALLTNLEDR---DVLFIDEI 114
            +A++   V  +LGV  R   G +I  A         G  A L   + ++    VLFIDE 
Sbjct: 891  VARLYGEVLTQLGVLER---GQLIEAARADLVGRYIGHTAQLTREVFEKARGGVLFIDEA 947

Query: 115  HRLS---------IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
            + L+             + L   MED + +++V            + RF          L
Sbjct: 948  YTLTPRGGGADFGQEAVDTLLKLMEDHRDEVVV----IVAGYTDEMERF----------L 993

Query: 166  LTNP-LQDRFGIPIRLNF--YEIEDLKTIVQRGAKLTG 200
             +NP L  RF  P R+ F  Y  E+L TIV+  A   G
Sbjct: 994  ASNPGLSSRF--PRRIAFADYSSEELVTIVRAQAAAMG 1029


>gi|31544730|ref|NP_853308.1| replication-associated recombination protein A [Mycoplasma
           gallisepticum str. R(low)]
 gi|31541576|gb|AAP56876.1| replication-associated recombination protein A (rarA) [Mycoplasma
           gallisepticum str. R(low)]
 gi|284930797|gb|ADC30736.1| replication-associated recombination protein A (rarA) [Mycoplasma
           gallisepticum str. R(high)]
          Length = 413

 Score = 39.3 bits (90), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 25/109 (22%)

Query: 21  LLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
             +P ++E+  GQ         L+  I+  K  +     +L  G PG+GKTTL  ++  E
Sbjct: 11  FYQPESVEDIIGQKHLLHEYGILRRMIDLRKPYS-----LLVTGEPGIGKTTLCNILISE 65

Query: 78  LGV---NFRSTSGPV------IAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           + +   +F S S  +      I+KA +L        ++ V+ IDEIHRL
Sbjct: 66  MNLPSFSFNSASDSLQELKQFISKAKEL--------NQCVIIIDEIHRL 106


>gi|116754033|ref|YP_843151.1| AAA family ATPase, CDC48 subfamily protein [Methanosaeta
           thermophila PT]
 gi|116665484|gb|ABK14511.1| AAA family ATPase, CDC48 subfamily [Methanosaeta thermophila PT]
          Length = 756

 Score = 39.3 bits (90), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 32/71 (45%), Gaps = 8/71 (11%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARELG 79
           E+  G   A + ++  IE      E  D         +L  GPPG GKT LA+ VA E  
Sbjct: 207 EDVGGLKNAITKVREMIELPLKHPELFDRLGIDPPKGILLYGPPGTGKTMLAKAVANESD 266

Query: 80  VNFRSTSGPVI 90
             F S +GP I
Sbjct: 267 AYFISVNGPEI 277



 Score = 36.6 bits (83), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 19/31 (61%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           +L  GPPG GKT LA+ VA E   NF +  G
Sbjct: 517 ILLYGPPGTGKTMLAKAVANESDANFITAKG 547


>gi|85713355|ref|ZP_01044369.1| ATP-dependent protease ATP-binding subunit [Idiomarina baltica
           OS145]
 gi|85692822|gb|EAQ30806.1| ATP-dependent protease ATP-binding subunit [Idiomarina baltica
           OS145]
          Length = 425

 Score = 39.3 bits (90), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LA+ +AR L V F       + +AG +   + N+            
Sbjct: 115 NILLIGPTGSGKTFLAETMARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 174

Query: 104 --EDRDVLFIDEIHRLS 118
              +R +++IDEI ++S
Sbjct: 175 EKAERGIVYIDEIDKIS 191


>gi|332886186|gb|EGK06430.1| ATP-dependent zinc metalloprotease FtsH [Dysgonomonas mossii DSM
           22836]
          Length = 673

 Score = 39.3 bits (90), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 77/183 (42%), Gaps = 29/183 (15%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VL 109
           L VGPPG GKT LA+ VA E  V F S SG       V   A  +  L    +++   ++
Sbjct: 232 LLVGPPGTGKTLLAKAVAGEADVPFFSLSGSDFVEMFVGVGASRVRDLFKQAKEKSPCII 291

Query: 110 FIDEIHRLSIIVEEILYPAMEDFQ-------LDLMVGEGPSARSVKINLSRFTLIAATTR 162
           FIDEI  +       L     D +       L  M G G +        S   ++AAT R
Sbjct: 292 FIDEIDAIGRARGRNLNMGSNDERENTLNQLLTEMDGFGTN--------SGVIILAATNR 343

Query: 163 VGLLTNPL--QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPR 220
             +L   L    RF   I ++  ++ D K I +    L  + + D  + ++   SR TP 
Sbjct: 344 ADILDKALLRAGRFDRQITVDLPDLNDRKEIFK--VHLRPIKIDD--SVDVEFLSRQTPG 399

Query: 221 IAG 223
            +G
Sbjct: 400 FSG 402


>gi|330973302|gb|EGH73368.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae
          pv. aceris str. M302273PT]
          Length = 461

 Score = 39.3 bits (90), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 6/68 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
          RPR+  E  GQ      LK  I A  +  + L H  LF G  G+GKTT+A+++A+ L   
Sbjct: 11 RPRSFREMVGQAHV---LKALINALDS--QRLHHAYLFTGTRGVGKTTIARIIAKCLNCE 65

Query: 82 FRSTSGPV 89
             TS P 
Sbjct: 66 TGITSTPC 73


>gi|320039500|gb|EFW21434.1| intermembrane space AAA protease IAP-1 [Coccidioides posadasii str.
           Silveira]
          Length = 811

 Score = 39.3 bits (90), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F   SG
Sbjct: 383 VLLVGPPGTGKTLLARAVAGEAGVPFFYMSG 413


>gi|319940220|ref|ZP_08014573.1| cell division protein FtsH [Streptococcus anginosus 1_2_62CV]
 gi|319810691|gb|EFW07021.1| cell division protein FtsH [Streptococcus anginosus 1_2_62CV]
          Length = 656

 Score = 39.3 bits (90), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 224 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISG 254


>gi|317488829|ref|ZP_07947360.1| DNA polymerase III [Eggerthella sp. 1_3_56FAA]
 gi|316912058|gb|EFV33636.1| DNA polymerase III [Eggerthella sp. 1_3_56FAA]
          Length = 506

 Score = 39.3 bits (90), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 48/106 (45%), Gaps = 10/106 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+  E+  GQ      +K  IE  K     + H  LF GP G GKTT A+++A+ L   
Sbjct: 10  RPQIFEDVVGQEHIERTIKNAIEQDK-----VSHAYLFTGPRGTGKTTTARLLAKALLCE 64

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI--IVEEIL 125
              T  P      D   ++ N E  DV  +D   R  +  + EEI+
Sbjct: 65  CGPTPEP--DGTCDDCVMIANGEHPDVYELDAASRTGVENVREEII 108


>gi|282862508|ref|ZP_06271570.1| AAA ATPase central domain protein [Streptomyces sp. ACTE]
 gi|282562847|gb|EFB68387.1| AAA ATPase central domain protein [Streptomyces sp. ACTE]
          Length = 1101

 Score = 39.3 bits (90), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 88/213 (41%), Gaps = 52/213 (24%)

Query: 27   LEEFTGQVEACSNLKVFIEAAKARAEA-------LDHVLFVGPPGLGKTTLAQVVA---R 76
            L     +V A  NL   + AAK R  A        +H++F GPPG GKTT+A++ A   R
Sbjct: 843  LTAVKNEVAALVNL---LTAAKQRKAAGLPTPRISNHLIFSGPPGTGKTTVARLYADLLR 899

Query: 77   ELGVNFRSTSGPVIAKA---------GDLAALLTNLEDR---DVLFIDEIHRLSI----- 119
             LGV  +   G ++  A         G  A L     +R    VLF+DE + L+      
Sbjct: 900  SLGVLPK---GQLVEVARADLVGRYVGHTAQLTKEAFERALGGVLFVDEAYTLTPEGATS 956

Query: 120  ----IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP-LQDRF 174
                   + L   MED + +++V      R ++    RF          L +NP L  RF
Sbjct: 957  DFGREAVDTLLKLMEDHRDEVVVIAAGYTREMR----RF----------LDSNPGLASRF 1002

Query: 175  GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEA 207
               +    Y  +DL  I+ + A   G   + EA
Sbjct: 1003 SRTVEFENYSTDDLLEILSKQATDYGYDCSPEA 1035


>gi|269125836|ref|YP_003299206.1| AAA ATPase central domain-containing protein [Thermomonospora
           curvata DSM 43183]
 gi|268310794|gb|ACY97168.1| AAA ATPase central domain protein [Thermomonospora curvata DSM
           43183]
          Length = 819

 Score = 39.3 bits (90), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 41/100 (41%), Positives = 51/100 (51%), Gaps = 23/100 (23%)

Query: 39  NLKVFIEAAKARAEA-------LDHVLFVGPPGLGKTTLAQVVA---RELGVNFRSTSGP 88
           ++   IEAA  RA A       L H +FVGPPG GKTT+A+V+A      G+  R T   
Sbjct: 269 SIAAAIEAAHLRAAAGVPTEKPLRHFVFVGPPGTGKTTVARVLAGIFYAFGLLPRPTV-- 326

Query: 89  VIAKAGDL-------AALLTN-LEDR---DVLFIDEIHRL 117
           V A+  DL        A+ TN L D     VLFIDE + L
Sbjct: 327 VEAQRADLVGEHLGATAIKTNRLIDSALGGVLFIDEAYGL 366



 Score = 36.2 bits (82), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 7/40 (17%)

Query: 44  IEAAKARAE-------ALDHVLFVGPPGLGKTTLAQVVAR 76
           ++ A+ RAE        + H +FVGPPG GKTT+A+V+ R
Sbjct: 566 LQVAQMRAERGLPTRPPMRHFVFVGPPGTGKTTVARVLGR 605


>gi|262281630|ref|ZP_06059399.1| cell division protein FtsH [Streptococcus sp. 2_1_36FAA]
 gi|262262084|gb|EEY80781.1| cell division protein FtsH [Streptococcus sp. 2_1_36FAA]
          Length = 660

 Score = 39.3 bits (90), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 224 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISG 254


>gi|259416323|ref|ZP_05740243.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Silicibacter
           sp. TrichCH4B]
 gi|259347762|gb|EEW59539.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Silicibacter
           sp. TrichCH4B]
          Length = 395

 Score = 39.3 bits (90), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+            
Sbjct: 114 NILLIGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNV 173

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDE+ +++
Sbjct: 174 ERAQRGIVYIDEVDKIT 190


>gi|255036262|ref|YP_003086883.1| ATPase associated with various cellular activities AAA_3
           [Dyadobacter fermentans DSM 18053]
 gi|254949018|gb|ACT93718.1| ATPase associated with various cellular activities AAA_3
           [Dyadobacter fermentans DSM 18053]
          Length = 308

 Score = 39.3 bits (90), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 43/101 (42%), Gaps = 11/101 (10%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFI---- 111
           H L VG PGL KT L Q +A  L +NF            D+    T  ++R+  FI    
Sbjct: 35  HCLLVGVPGLAKTLLIQTIASSLDLNFNRIQFTPDLMPSDILGSETLDQNRNFKFIKGPI 94

Query: 112 -------DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSAR 145
                  DEI+R     +  L  AM+++ + +   + P  R
Sbjct: 95  FANIILADEINRTPPKTQSALLEAMQEYSVTIAGAKHPLDR 135


>gi|303314267|ref|XP_003067142.1| ATP-dependent protease La, putative [Coccidioides posadasii C735
           delta SOWgp]
 gi|240106810|gb|EER24997.1| ATP-dependent protease La, putative [Coccidioides posadasii C735
           delta SOWgp]
          Length = 922

 Score = 39.3 bits (90), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 76/179 (42%), Gaps = 33/179 (18%)

Query: 41  KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTS-GPVIAKA------ 93
           K+ +  +K + +    +L VGPPG GKT+LA+ +A  LG  F   S G V  +A      
Sbjct: 456 KLHVLKSKRKTDKSPILLLVGPPGTGKTSLAKSIATSLGRKFHRISLGGVRDEAEIRGHR 515

Query: 94  ----GDLAALLTNLEDR-----DVLFIDEIHRL---------SIIVEEILYPAMEDFQLD 135
                 +  L+ N   +      V  +DEI ++         S  + E+L P       D
Sbjct: 516 RTYVAAMPGLIVNGLKKVGVANPVFLLDEIDKVGGANFHGDPSAAMLEVLDPEQNHSFSD 575

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
             +       ++ I+LS+   IA    +  +  PL DR    I+L+ Y   + + I +R
Sbjct: 576 HYI-------NIPIDLSKVLFIATANSLDTIPAPLLDRMET-IQLSGYTTIEKRHIARR 626


>gi|254573602|ref|XP_002493910.1| Essential protein involved in transcription regulation [Pichia
          pastoris GS115]
 gi|238033709|emb|CAY71731.1| Essential protein involved in transcription regulation [Pichia
          pastoris GS115]
 gi|328354270|emb|CCA40667.1| RuvB-like helicase 1 [Pichia pastoris CBS 7435]
          Length = 456

 Score = 39.3 bits (90), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 27/50 (54%)

Query: 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
          F GQ EA     V ++  K R  +   +L  G PG GKT LA  V++ELG
Sbjct: 41 FVGQAEAREACGVIVDLIKYRKMSGKAILLAGGPGTGKTALALAVSQELG 90


>gi|298346900|ref|YP_003719587.1| ATP-binding protein [Mobiluncus curtisii ATCC 43063]
 gi|298236961|gb|ADI68093.1| ATP-binding protein [Mobiluncus curtisii ATCC 43063]
          Length = 250

 Score = 39.3 bits (90), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 10/105 (9%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA-----QVVARELG 79
           +T+EEF    +     ++   A+ A     ++++ +GPPG GKT LA     +V+ +   
Sbjct: 71  KTMEEFDFDYQPQIRNEILPNASGAYIAKAENIILLGPPGTGKTHLAVSRGMKVIEQNTN 130

Query: 80  VNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
           V F +  G +           LA  L  L+   +L IDE   L I
Sbjct: 131 VLFNTAQGWIETLQTAHNHAQLAQALKRLKKYPLLIIDEFGYLPI 175


>gi|219111347|ref|XP_002177425.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217411960|gb|EEC51888.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 337

 Score = 39.3 bits (90), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 8/74 (10%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNF-----RSTSGPVIAKAGDLAALLTNLEDR 106
           EA+  VL  GPPG GKT LA+ VA E G +F      S     + ++   A  +  L  R
Sbjct: 58  EAVKGVLLFGPPGTGKTMLAKAVATEGGASFLSVDASSVENKWLGESEKNAKAVFTLARR 117

Query: 107 ---DVLFIDEIHRL 117
               V+F+DE+  L
Sbjct: 118 LAPCVIFVDEVDSL 131


>gi|210621781|ref|ZP_03292810.1| hypothetical protein CLOHIR_00755 [Clostridium hiranonis DSM 13275]
 gi|210154545|gb|EEA85551.1| hypothetical protein CLOHIR_00755 [Clostridium hiranonis DSM 13275]
          Length = 412

 Score = 39.3 bits (90), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---EDRDV 108
           ++L +GP G GKT LAQ +A+ L V F       + +AG    D+  +L  L    D DV
Sbjct: 111 NILLLGPTGSGKTLLAQTLAKTLNVPFAMADATALTEAGYVGEDVENILLKLIQAADNDV 170

Query: 109 -------LFIDEIHRLS 118
                  ++IDEI +++
Sbjct: 171 EKAEKGIIYIDEIDKIA 187


>gi|149201012|ref|ZP_01877987.1| ATP-dependent protease ATP-binding subunit [Roseovarius sp. TM1035]
 gi|149145345|gb|EDM33371.1| ATP-dependent protease ATP-binding subunit [Roseovarius sp. TM1035]
          Length = 422

 Score = 39.3 bits (90), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+            
Sbjct: 112 NILLIGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSSEYNV 171

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDE+ +++
Sbjct: 172 ERAQRGIVYIDEVDKIT 188


>gi|145473987|ref|XP_001423016.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124390076|emb|CAK55618.1| unnamed protein product [Paramecium tetraurelia]
          Length = 483

 Score = 39.3 bits (90), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 23/161 (14%)

Query: 46  AAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA-------- 97
           A ++++  L ++LF G PG GKT  A+++A   G++F   SG  I K G+ A        
Sbjct: 276 AKQSQSTPLRNLLFHGQPGTGKTLFAKLLAYNSGLHFAIISGGDIEKLGEQAVPEIDKLF 335

Query: 98  ALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE---GPSARSVKINLSRF 154
           +   +     ++FIDE        E I Y      Q    +       SA S K     +
Sbjct: 336 SWCNSTPKGTLIFIDE-------AEAIFYKRSSSKQTSAALSTFLAQTSAVSKK-----Y 383

Query: 155 TLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           +LI AT     L   + DR    ++ ++   E    ++++G
Sbjct: 384 SLILATNLPNKLDEAILDRIDQIVKFDYLNEEQRVKLLKKG 424


>gi|123966074|ref|YP_001011155.1| FtsH ATP-dependent protease-like protein [Prochlorococcus marinus
           str. MIT 9515]
 gi|123200440|gb|ABM72048.1| FtsH ATP-dependent protease-like protein [Prochlorococcus marinus
           str. MIT 9515]
          Length = 637

 Score = 39.3 bits (90), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S +G
Sbjct: 217 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLAG 247


>gi|119194407|ref|XP_001247807.1| hypothetical protein CIMG_01578 [Coccidioides immitis RS]
          Length = 811

 Score = 39.3 bits (90), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F   SG
Sbjct: 383 VLLVGPPGTGKTLLARAVAGEAGVPFFYMSG 413


>gi|119174392|ref|XP_001239557.1| hypothetical protein CIMG_09178 [Coccidioides immitis RS]
          Length = 922

 Score = 39.3 bits (90), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 76/179 (42%), Gaps = 33/179 (18%)

Query: 41  KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTS-GPVIAKA------ 93
           K+ +  +K + +    +L VGPPG GKT+LA+ +A  LG  F   S G V  +A      
Sbjct: 456 KLHVLKSKRKTDKSPILLLVGPPGTGKTSLAKSIATSLGRKFHRISLGGVRDEAEIRGHR 515

Query: 94  ----GDLAALLTNLEDR-----DVLFIDEIHRL---------SIIVEEILYPAMEDFQLD 135
                 +  L+ N   +      V  +DEI ++         S  + E+L P       D
Sbjct: 516 RTYVAAMPGLIVNGLKKVGVANPVFLLDEIDKVGGANFHGDPSAAMLEVLDPEQNHSFSD 575

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
             +       ++ I+LS+   IA    +  +  PL DR    I+L+ Y   + + I +R
Sbjct: 576 HYI-------NIPIDLSKVLFIATANSLDTIPAPLLDRMET-IQLSGYTTIEKRHIARR 626


>gi|85543015|gb|ABC71388.1| putative FtsH protease [Triticum monococcum]
          Length = 531

 Score = 39.3 bits (90), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 21/31 (67%)

Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
          VL VGPPG GKT LA+ +A E  V F S SG
Sbjct: 38 VLLVGPPGTGKTMLARAIAGEASVPFFSCSG 68


>gi|54297777|ref|YP_124146.1| ATP-dependent protease ATP-binding subunit ClpX [Legionella
           pneumophila str. Paris]
 gi|61211415|sp|Q5X452|CLPX_LEGPA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|53751562|emb|CAH12980.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Legionella
           pneumophila str. Paris]
          Length = 424

 Score = 39.3 bits (90), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDV 108
           ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+        D DV
Sbjct: 112 NILLIGPTGSGKTLLAQTLARILNVPFAMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 171

Query: 109 -------LFIDEIHRLS 118
                  ++IDEI ++S
Sbjct: 172 DKAQQGIVYIDEIDKIS 188


>gi|33861300|ref|NP_892861.1| FtsH ATP-dependent protease-like protein [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
 gi|33633877|emb|CAE19202.1| FtsH ATP-dependent protease homolog [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 637

 Score = 39.3 bits (90), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F S +G
Sbjct: 217 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLAG 247


>gi|118578616|ref|YP_899866.1| ATPase central domain-containing protein [Pelobacter propionicus
           DSM 2379]
 gi|118501326|gb|ABK97808.1| AAA ATPase, central domain protein [Pelobacter propionicus DSM
           2379]
          Length = 387

 Score = 39.3 bits (90), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 33/66 (50%), Gaps = 7/66 (10%)

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GD----LAALLTNLE-DRDVLFI 111
           F GPPG GKT  A V+A ELG N    S   I     GD    + AL    E D+ VLFI
Sbjct: 136 FHGPPGTGKTMTAHVIAVELGKNILVASYAQIESKYHGDGPKNVEALFHAAERDQAVLFI 195

Query: 112 DEIHRL 117
           DE   L
Sbjct: 196 DEADSL 201


>gi|328868721|gb|EGG17099.1| AAA ATPase domain-containing protein [Dictyostelium fasciculatum]
          Length = 756

 Score = 39.3 bits (90), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARELG 79
           E+  GQ +    LK  IE       A +         +L  GPPG  KT LA+ +A E G
Sbjct: 492 EDIGGQDDIKEKLKEAIEWPLKHPAAFERMGIRPPKGILLYGPPGCSKTLLAKALATESG 551

Query: 80  VNFRSTSGP 88
           +NF +  GP
Sbjct: 552 LNFIAVKGP 560


>gi|325686490|gb|EGD28519.1| cell division protein FtsH [Streptococcus sanguinis SK72]
          Length = 659

 Score = 39.3 bits (90), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 224 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISG 254


>gi|298386276|ref|ZP_06995832.1| DNA polymerase III, gamma/tau subunit [Bacteroides sp. 1_1_14]
 gi|298260653|gb|EFI03521.1| DNA polymerase III, gamma/tau subunit [Bacteroides sp. 1_1_14]
          Length = 619

 Score = 39.3 bits (90), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 10/110 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP T E   GQ    + LK  I   K     L H  LF GP G+GKTT A++ A+ +   
Sbjct: 12  RPSTFESVVGQRALTTTLKNAIATQK-----LAHAYLFCGPRGVGKTTCARIFAKTINCM 66

Query: 82  FRSTSGPVIAKAGDLAAL----LTNLEDRDVLFIDEIHRLSIIVEEILYP 127
             +  G    +     A       N+ + D    + +  +  +VE++  P
Sbjct: 67  TPTADGEACNECESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIP 116


>gi|295395571|ref|ZP_06805765.1| ATP-dependent metalloprotease FtsH [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294971590|gb|EFG47471.1| ATP-dependent metalloprotease FtsH [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 727

 Score = 39.3 bits (90), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 7/83 (8%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKA----RAEALDHVLFVGPPG 64
           ++ V++E  D++      ++E    +E    +K F+   K      A+    V+  GPPG
Sbjct: 178 AKMVNKEHPDVTFKDVAGVDE---ALEELQEIKEFLAEPKKFTDLGAKIPKGVMLYGPPG 234

Query: 65  LGKTTLAQVVARELGVNFRSTSG 87
            GKT LA+ VA E GV F S SG
Sbjct: 235 TGKTLLARAVAGEAGVPFFSISG 257


>gi|289166921|ref|YP_003445188.1| cell-division protein [Streptococcus mitis B6]
 gi|288906486|emb|CBJ21316.1| cell-division protein [Streptococcus mitis B6]
          Length = 652

 Score = 39.3 bits (90), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 223 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISG 253


>gi|262037377|ref|ZP_06010842.1| ATP-dependent protease LonB [Leptotrichia goodfellowii F0264]
 gi|261748634|gb|EEY36008.1| ATP-dependent protease LonB [Leptotrichia goodfellowii F0264]
          Length = 590

 Score = 39.3 bits (90), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 82/218 (37%), Gaps = 47/218 (21%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTS-----------GPVIAKAGDLAALLTNL-- 103
           +  VGPPG+GKT+LA  VAR +   F   S           G      G +   L N   
Sbjct: 347 ICLVGPPGVGKTSLANSVARSMNRKFTRISLGGLRDEAEIRGHRRTYIGSMPGRLINSLK 406

Query: 104 ---EDRDVLFIDEIHRLSIIVE--------EILYPA----MEDFQLDLMVGEGPSARSVK 148
               +  V+  DEI +++            E+L PA     ED  +D             
Sbjct: 407 QVGVNNPVMLFDEIDKMASDFRGDPASAMLEVLDPAQNHTFEDHYIDY-----------P 455

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAA 208
            +LS+   I     +G +  PL+DR  I    ++ E E L       AK   +  T E  
Sbjct: 456 FDLSKVFFICTANDLGGIPGPLRDRMEIISIESYTEFEKLNI-----AKKYLIPQTQE-- 508

Query: 209 CEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
            E  ++    P     + + + ++   A  + + REI+
Sbjct: 509 -ENGLKDYKIPFSDASIFKIINEYTREAGVRNLRREIS 545


>gi|259484950|tpe|CBF81608.1| TPA: intermembrane space AAA protease IAP-1 (AFU_orthologue;
           AFUA_4G11530) [Aspergillus nidulans FGSC A4]
          Length = 784

 Score = 39.3 bits (90), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F   SG
Sbjct: 351 VLLVGPPGTGKTLLARAVAGEAGVPFFYMSG 381


>gi|227494494|ref|ZP_03924810.1| ATP-dependent metalloprotease FtsH [Actinomyces coleocanis DSM
           15436]
 gi|226832228|gb|EEH64611.1| ATP-dependent metalloprotease FtsH [Actinomyces coleocanis DSM
           15436]
          Length = 670

 Score = 39.3 bits (90), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 45/93 (48%), Gaps = 12/93 (12%)

Query: 34  VEACSNLKVFIEAA----KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPV 89
           VE    +K F+  A    K  A+    VL  GPPG GKT LA+ VA E  V F S SG  
Sbjct: 180 VEELEEIKNFLANAERYQKVGAKVPRGVLLYGPPGTGKTLLAKAVAGEAEVPFFSISGSE 239

Query: 90  IAK--AGDLAALLTNLEDR------DVLFIDEI 114
             +   G  A+ +  L D+       ++FIDEI
Sbjct: 240 FMELYVGVGASRVRELFDKAKKAAPAIIFIDEI 272


>gi|224101003|ref|XP_002334315.1| predicted protein [Populus trichocarpa]
 gi|222871041|gb|EEF08172.1| predicted protein [Populus trichocarpa]
          Length = 245

 Score = 39.3 bits (90), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 8/68 (11%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRS-TSGPVIAKA-GDLAALLTNL----EDR--DVL 109
           L  GPPG GK+ LA+ VA E    F S +S  +++K  G+   L++NL     D+   ++
Sbjct: 169 LLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFQMARDKAPSII 228

Query: 110 FIDEIHRL 117
           FIDEI  L
Sbjct: 229 FIDEIDSL 236


>gi|168007929|ref|XP_001756660.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162692256|gb|EDQ78614.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 677

 Score = 39.3 bits (90), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ +A E GV F   SG
Sbjct: 229 VLLVGPPGTGKTMLARAIAGEAGVPFFYCSG 259


>gi|114053003|ref|NP_001039705.1| 26S protease regulatory subunit 10B [Bos taurus]
 gi|119390895|sp|Q2KIW6|PRS10_BOVIN RecName: Full=26S protease regulatory subunit 10B; AltName:
           Full=26S proteasome AAA-ATPase subunit RPT4; AltName:
           Full=Proteasome 26S subunit ATPase 6
 gi|86827363|gb|AAI12483.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Bos taurus]
          Length = 389

 Score = 39.3 bits (90), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 56/124 (45%), Gaps = 23/124 (18%)

Query: 8   LSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV--------L 58
           L  N+S ED  ++S        E  G  E    L+  IE      E    V        L
Sbjct: 118 LVYNMSHEDPGNVSY------SEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCL 171

Query: 59  FVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA-GDLAALLTNLED--RD----VLF 110
             GPPG GKT LA+ VA +L  NF +  S  ++ K  G+ A L+  + +  RD    ++F
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIF 231

Query: 111 IDEI 114
           +DEI
Sbjct: 232 MDEI 235


>gi|54294747|ref|YP_127162.1| ATP-dependent protease ATP-binding subunit [Legionella pneumophila
           str. Lens]
 gi|148359405|ref|YP_001250612.1| ATP-dependent Clp protease ATP binding subunit ClpX [Legionella
           pneumophila str. Corby]
 gi|296107451|ref|YP_003619151.1| 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase
           [Legionella pneumophila 2300/99 Alcoy]
 gi|61211413|sp|Q5WVJ1|CLPX_LEGPL RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|166214781|sp|A5ID16|CLPX_LEGPC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|53754579|emb|CAH16063.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Legionella
           pneumophila str. Lens]
 gi|148281178|gb|ABQ55266.1| ATP-dependent Clp protease, ATP binding subunit ClpX [Legionella
           pneumophila str. Corby]
 gi|295649352|gb|ADG25199.1| 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase
           [Legionella pneumophila 2300/99 Alcoy]
          Length = 424

 Score = 39.3 bits (90), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDV 108
           ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+        D DV
Sbjct: 112 NILLIGPTGSGKTLLAQTLARILNVPFAMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 171

Query: 109 -------LFIDEIHRLS 118
                  ++IDEI ++S
Sbjct: 172 DKAQQGIVYIDEIDKIS 188


>gi|15828258|ref|NP_302521.1| DNA polymerase III subunits gamma and tau [Mycobacterium leprae
          TN]
 gi|221230735|ref|YP_002504151.1| DNA polymerase III subunits gamma and tau [Mycobacterium leprae
          Br4923]
 gi|3150103|emb|CAA19155.1| DNA polymerase III subunits gamma and tau [Mycobacterium leprae]
 gi|13093951|emb|CAC31851.1| DNA polymerase III, subunit [gamma/tau] [Mycobacterium leprae]
 gi|219933842|emb|CAR72433.1| DNA polymerase III, subunit [gamma/tau] [Mycobacterium leprae
          Br4923]
          Length = 611

 Score = 39.3 bits (90), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 6/68 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
          RP    E  GQ      L + +EA +     ++H  LF GP G GKT+ A+++AR L   
Sbjct: 8  RPAAFAEVVGQEHVTEPLSIALEAGR-----INHAYLFSGPRGCGKTSSARILARSLNCA 62

Query: 82 FRSTSGPV 89
            +T+ P 
Sbjct: 63 QGTTATPC 70


>gi|1526426|dbj|BAA11338.1| proteasome subunit p42 [Homo sapiens]
          Length = 389

 Score = 39.3 bits (90), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 56/124 (45%), Gaps = 23/124 (18%)

Query: 8   LSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV--------L 58
           L  N+S ED  ++S        E  G  E    L+  IE      E    V        L
Sbjct: 118 LVYNMSHEDPGNVSY------SEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCL 171

Query: 59  FVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA-GDLAALLTNLED--RD----VLF 110
             GPPG GKT LA+ VA +L  NF +  S  ++ K  G+ A L+  + +  RD    ++F
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIF 231

Query: 111 IDEI 114
           +DEI
Sbjct: 232 MDEI 235


>gi|89096405|ref|ZP_01169298.1| hypothetical protein B14911_26950 [Bacillus sp. NRRL B-14911]
 gi|89089259|gb|EAR68367.1| hypothetical protein B14911_26950 [Bacillus sp. NRRL B-14911]
          Length = 309

 Score = 39.3 bits (90), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 68/156 (43%), Gaps = 26/156 (16%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKAGDLAALLTNLEDR-------- 106
           HVL  G PG GKT + + +A  LG  F R    P +  +    +++ N+++         
Sbjct: 35  HVLIEGVPGTGKTQMVKTLAGLLGGEFSRIQFTPDLLPSDITGSMIYNMKESSFQTLKGP 94

Query: 107 ---DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
              +VL  DEI+R     +  L  AME+ Q+ +  GE          L     +AAT   
Sbjct: 95  VFTNVLLADEINRTPAKTQAALLEAMEEKQVTIQ-GE-------TYQLPEAFFVAATQNP 146

Query: 164 GLL--TNPL----QDRFGIPIRLNFYEIEDLKTIVQ 193
                T PL    QDRF   + + F E ++ K ++Q
Sbjct: 147 IEFEGTYPLPEAQQDRFLFKLIIGFPEFDEEKLVLQ 182


>gi|330831864|ref|YP_004400689.1| cell division protease FtsH [Streptococcus suis ST3]
 gi|329306087|gb|AEB80503.1| cell division protease FtsH [Streptococcus suis ST3]
          Length = 656

 Score = 39.3 bits (90), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 224 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISG 254


>gi|325284113|ref|YP_004256654.1| ATP-dependent metalloprotease FtsH [Deinococcus proteolyticus MRP]
 gi|324315922|gb|ADY27037.1| ATP-dependent metalloprotease FtsH [Deinococcus proteolyticus MRP]
          Length = 625

 Score = 39.3 bits (90), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 7/69 (10%)

Query: 26  TLEEFTGQVEACSNLKVFI------EAAKARAEALDH-VLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  EA ++L+  +      E  +A    + H +L VGPPG GKT LA+ VA E 
Sbjct: 157 TFADVAGCEEAKADLQEVVDFLRQPEKYRALGARIPHGLLLVGPPGSGKTLLAKAVAGEA 216

Query: 79  GVNFRSTSG 87
           GV + + SG
Sbjct: 217 GVPYFAVSG 225


>gi|317477107|ref|ZP_07936348.1| DNA polymerase III [Bacteroides eggerthii 1_2_48FAA]
 gi|316906650|gb|EFV28363.1| DNA polymerase III [Bacteroides eggerthii 1_2_48FAA]
          Length = 606

 Score = 39.3 bits (90), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 10/110 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP T E   GQ    + LK  I   K     L H  LF GP G+GKTT A++ A+ +   
Sbjct: 12  RPSTFESVVGQHALTTTLKNAIATNK-----LAHAYLFCGPRGVGKTTCARIFAKTINCM 66

Query: 82  FRSTSGPVIAKAGDLAAL----LTNLEDRDVLFIDEIHRLSIIVEEILYP 127
             +  G    +     A       N+ + D    + +  +  +VE++  P
Sbjct: 67  SPTAEGEACNQCESCTAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIP 116


>gi|317502306|ref|ZP_07960475.1| ATP-dependent metalloprotease FtsH [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331089910|ref|ZP_08338802.1| hypothetical protein HMPREF1025_02385 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316896262|gb|EFV18364.1| ATP-dependent metalloprotease FtsH [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330403142|gb|EGG82703.1| hypothetical protein HMPREF1025_02385 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 613

 Score = 39.3 bits (90), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 201 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISG 231


>gi|313678387|ref|YP_004056127.1| adenylate kinase [Mycoplasma bovis PG45]
 gi|312950364|gb|ADR24959.1| adenylate kinase [Mycoplasma bovis PG45]
          Length = 216

 Score = 39.3 bits (90), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 47/85 (55%), Gaps = 9/85 (10%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG---PVIAKAGDLAALLTNLEDRDV 108
           + + +++F+GPPG+GK T+A ++A+E G+   ST       IA A +L   ++++ +   
Sbjct: 5   KKIKNLVFMGPPGVGKGTVASIIAQEYGLVHLSTGNIFRAEIASASELGKKVSSIVESGG 64

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQ 133
              D+      I  EI+  A+E++ 
Sbjct: 65  YVPDD------ITNEIVARALENYN 83


>gi|312877976|ref|ZP_07737917.1| ATP-dependent protease La [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795250|gb|EFR11638.1| ATP-dependent protease La [Caldicellulosiruptor lactoaceticus 6A]
          Length = 775

 Score = 39.3 bits (90), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLA 71
           S E  DI++++    E+  G  +    +  +I   K + +    +L  VGPPG+GKT++A
Sbjct: 309 SDEKIDINVVKKVLDEDHYGLTKVKERILEYIAVRKLKNDMKGPILCLVGPPGVGKTSIA 368

Query: 72  QVVARELGVNF 82
           + +AR L  N+
Sbjct: 369 KSIARALNRNY 379


>gi|308183486|ref|YP_003927613.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
           pylori PeCan4]
 gi|308065671|gb|ADO07563.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
           pylori PeCan4]
          Length = 452

 Score = 39.3 bits (90), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 14/81 (17%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT +AQ +A+ L +    +    + +AG    D+  +LT L        
Sbjct: 150 NILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNV 209

Query: 104 --EDRDVLFIDEIHRLSIIVE 122
               + ++FIDEI ++S + E
Sbjct: 210 QKAQKGIVFIDEIDKISRLSE 230


>gi|270291816|ref|ZP_06198031.1| cell division protein FtsH [Streptococcus sp. M143]
 gi|270279344|gb|EFA25186.1| cell division protein FtsH [Streptococcus sp. M143]
          Length = 652

 Score = 39.3 bits (90), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 223 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISG 253


>gi|262373454|ref|ZP_06066732.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
           junii SH205]
 gi|262311207|gb|EEY92293.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
           junii SH205]
          Length = 436

 Score = 39.3 bits (90), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------ED 105
           A  ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+        D
Sbjct: 110 AKSNILLIGPTGSGKTLLAQTLARLLDVPFAMADATTLTEAGYVGEDVENIVQKLLQKAD 169

Query: 106 RDV-------LFIDEIHRLS 118
            DV       ++IDEI +++
Sbjct: 170 YDVEKAQKGIIYIDEIDKIT 189


>gi|260549097|ref|ZP_05823318.1| ATP-dependent protease Clp [Acinetobacter sp. RUH2624]
 gi|260407825|gb|EEX01297.1| ATP-dependent protease Clp [Acinetobacter sp. RUH2624]
          Length = 437

 Score = 39.3 bits (90), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------ED 105
           A  ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+        D
Sbjct: 110 AKSNILLIGPTGSGKTLLAQTLARLLDVPFAMADATTLTEAGYVGEDVENIVQKLLQKAD 169

Query: 106 RDV-------LFIDEIHRLS 118
            DV       ++IDEI +++
Sbjct: 170 YDVEKAQKGIIYIDEIDKIT 189


>gi|237739237|ref|ZP_04569718.1| ATP-dependent protease ATP-binding subunit [Fusobacterium sp.
           2_1_31]
 gi|229422845|gb|EEO37892.1| ATP-dependent protease ATP-binding subunit [Fusobacterium sp.
           2_1_31]
          Length = 430

 Score = 39.3 bits (90), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           +VL +GP G GKT LAQ +AR L V F       + +AG    D+  +L  L        
Sbjct: 123 NVLLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGDDVENVLVRLIQACNYDI 182

Query: 104 --EDRDVLFIDEIHRLS 118
              +R +++IDE  +++
Sbjct: 183 PNAERGIIYIDEFDKIA 199


>gi|224049231|ref|XP_002188452.1| PREDICTED: similar to Spermatogenesis-associated protein 5, partial
           [Taeniopygia guttata]
          Length = 831

 Score = 39.3 bits (90), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 17/37 (45%), Positives = 23/37 (62%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           +A   VL  GPPG  KT +A+ +A E G+NF +  GP
Sbjct: 597 QAPKGVLLYGPPGCSKTMIAKALAHESGLNFLAVKGP 633



 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 77/182 (42%), Gaps = 34/182 (18%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALL------TNLEDRDV 108
           VL  GPPG GKT +A+ +A E+G +    +GP +I+K  G+  + L       +L    +
Sbjct: 328 VLLYGPPGTGKTMIAKAIANEVGAHVTVINGPEIISKFYGESESRLRQIFAEASLCRPSI 387

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQ-----------LDLMVGEGPSARSVKINLSRFTLI 157
           +FIDE+        + L P  E  Q           L LM G G  +        +  ++
Sbjct: 388 IFIDEL--------DALCPKREGTQNEVEKRVVASLLTLMDGIGSESSE-----GQLLVL 434

Query: 158 AATTRVGLLTNPLQ--DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRS 215
            AT R   L   L+   RF   I +     +D   I+Q+  K    ++T E    +A  +
Sbjct: 435 GATNRPHALDAALRRPGRFDKEIEIGIPNAQDRLDILQKLLKKVPHSLTAEQLAHLADSA 494

Query: 216 RG 217
            G
Sbjct: 495 HG 496


>gi|162453518|ref|YP_001615885.1| hypothetical protein sce5242 [Sorangium cellulosum 'So ce 56']
 gi|161164100|emb|CAN95405.1| hypothetical protein sce5242 [Sorangium cellulosum 'So ce 56']
          Length = 1902

 Score = 39.3 bits (90), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 26/41 (63%)

Query: 50   RAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
            R + +  +L + PPG GKTTL + VA +LG+ F   +GP +
Sbjct: 1322 RTDLMGMLLLISPPGYGKTTLMEYVASKLGLVFMKVNGPSL 1362


>gi|157690851|ref|YP_001485313.1| M41 family endopeptidase FtsH [Bacillus pumilus SAFR-032]
 gi|157679609|gb|ABV60753.1| M41 family endopeptidase FtsH [Bacillus pumilus SAFR-032]
          Length = 634

 Score = 39.3 bits (90), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+  A E GV F S SG       V   A  +  L  N +     +
Sbjct: 197 VLLVGPPGTGKTLLARASAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCL 256

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 257 IFIDEI 262


>gi|149921067|ref|ZP_01909526.1| cell division protein FtsH [Plesiocystis pacifica SIR-1]
 gi|149818071|gb|EDM77528.1| cell division protein FtsH [Plesiocystis pacifica SIR-1]
          Length = 651

 Score = 39.3 bits (90), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL +GPPG GKT LA+ +A E GV F S SG
Sbjct: 199 VLLMGPPGTGKTLLARAIAGEAGVAFFSISG 229


>gi|111658618|ref|ZP_01409268.1| hypothetical protein SpneT_02000208 [Streptococcus pneumoniae
           TIGR4]
          Length = 630

 Score = 39.3 bits (90), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 201 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISG 231


>gi|34783985|gb|AAH57997.1| Psmc6 protein [Mus musculus]
          Length = 382

 Score = 39.3 bits (90), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 56/124 (45%), Gaps = 23/124 (18%)

Query: 8   LSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV--------L 58
           L  N+S ED  ++S        E  G  E    L+  IE      E    V        L
Sbjct: 111 LVYNMSHEDPGNVSY------SEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCL 164

Query: 59  FVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA-GDLAALLTNLED--RD----VLF 110
             GPPG GKT LA+ VA +L  NF +  S  ++ K  G+ A L+  + +  RD    ++F
Sbjct: 165 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIF 224

Query: 111 IDEI 114
           +DEI
Sbjct: 225 MDEI 228


>gi|85057871|ref|YP_456787.1| cell division protein ftsH-like protein [Aster yellows
           witches'-broom phytoplasma AYWB]
 gi|123725332|sp|Q2NIN5|FTSH_AYWBP RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|84789976|gb|ABC65708.1| cell division protein ftsH homolog [Aster yellows witches'-broom
           phytoplasma AYWB]
          Length = 676

 Score = 39.3 bits (90), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F + SG
Sbjct: 208 VLLYGPPGTGKTLLAKAVAGEAGVPFFAASG 238


>gi|75908658|ref|YP_322954.1| FtsH peptidase [Anabaena variabilis ATCC 29413]
 gi|75702383|gb|ABA22059.1| membrane protease FtsH catalytic subunit [Anabaena variabilis ATCC
           29413]
          Length = 633

 Score = 39.3 bits (90), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+ +A E  V F S SG       V   A  +  L    +D    +
Sbjct: 211 VLLVGPPGTGKTLLAKAIAGEAAVPFFSISGSEFVEMFVGVGASRVRDLFKKAKDNAPCL 270

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 271 IFIDEI 276


>gi|39938616|ref|NP_950382.1| ATP-dependent Zn protease [Onion yellows phytoplasma OY-M]
 gi|39721725|dbj|BAD04215.1| ATP-dependent Zn protease [Onion yellows phytoplasma OY-M]
          Length = 674

 Score = 39.3 bits (90), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F + SG
Sbjct: 208 VLLYGPPGTGKTLLAKAVAGEAGVPFFAASG 238


>gi|27754103|ref|NP_080235.2| 26S protease regulatory subunit 10B [Mus musculus]
 gi|126290027|ref|XP_001365047.1| PREDICTED: similar to conserved ATPase domain protein 44
           [Monodelphis domestica]
 gi|194034456|ref|XP_001928782.1| PREDICTED: 26S protease regulatory subunit 10B [Sus scrofa]
 gi|51702772|sp|P62333|PRS10_HUMAN RecName: Full=26S protease regulatory subunit 10B; AltName:
           Full=26S proteasome AAA-ATPase subunit RPT4; AltName:
           Full=Proteasome 26S subunit ATPase 6; AltName:
           Full=Proteasome subunit p42
 gi|55977306|sp|P62334|PRS10_MOUSE RecName: Full=26S protease regulatory subunit 10B; AltName:
           Full=26S proteasome AAA-ATPase subunit RPT4; AltName:
           Full=Proteasome 26S subunit ATPase 6; AltName:
           Full=Proteasome subunit p42
 gi|59800155|sp|P62335|PRS10_SPETR RecName: Full=26S protease regulatory subunit 10B; AltName:
           Full=26S proteasome AAA-ATPase subunit RPT4; AltName:
           Full=Conserved ATPase domain protein 44; Short=CADp44;
           AltName: Full=Proteasome 26S subunit ATPase 6; AltName:
           Full=Proteasome subunit p42
 gi|1045497|gb|AAB40354.1| conserved ATPase domain protein 44 [Spermophilus tridecemlineatus]
 gi|2213932|gb|AAB61616.1| 26S proteasome regulatory subunit [Homo sapiens]
 gi|12848757|dbj|BAB28078.1| unnamed protein product [Mus musculus]
 gi|13529266|gb|AAH05390.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Homo
           sapiens]
 gi|30582525|gb|AAP35489.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Homo
           sapiens]
 gi|48145535|emb|CAG32990.1| PSMC6 [Homo sapiens]
 gi|61361236|gb|AAX42017.1| proteasome 26S subunit 6 [synthetic construct]
 gi|61361244|gb|AAX42018.1| proteasome 26S subunit 6 [synthetic construct]
 gi|74185083|dbj|BAE39144.1| unnamed protein product [Mus musculus]
 gi|74194908|dbj|BAE26034.1| unnamed protein product [Mus musculus]
 gi|109733764|gb|AAI16753.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Mus
           musculus]
 gi|111601154|gb|AAI19169.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Mus
           musculus]
 gi|119586049|gb|EAW65645.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Homo
           sapiens]
 gi|123994057|gb|ABM84630.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [synthetic
           construct]
 gi|148688745|gb|EDL20692.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6, isoform
           CRA_b [Mus musculus]
 gi|189053915|dbj|BAG36422.1| unnamed protein product [Homo sapiens]
 gi|208967156|dbj|BAG73592.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [synthetic
           construct]
 gi|296483635|gb|DAA25750.1| 26S protease regulatory subunit S10B [Bos taurus]
          Length = 389

 Score = 39.3 bits (90), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 56/124 (45%), Gaps = 23/124 (18%)

Query: 8   LSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV--------L 58
           L  N+S ED  ++S        E  G  E    L+  IE      E    V        L
Sbjct: 118 LVYNMSHEDPGNVSY------SEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCL 171

Query: 59  FVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA-GDLAALLTNLED--RD----VLF 110
             GPPG GKT LA+ VA +L  NF +  S  ++ K  G+ A L+  + +  RD    ++F
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIF 231

Query: 111 IDEI 114
           +DEI
Sbjct: 232 MDEI 235


>gi|86130753|ref|ZP_01049352.1| ATP-dependent Clp protease ATP-binding subunit [Dokdonia
           donghaensis MED134]
 gi|85818164|gb|EAQ39324.1| ATP-dependent Clp protease ATP-binding subunit [Dokdonia
           donghaensis MED134]
          Length = 410

 Score = 39.3 bits (90), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLT--------NL 103
           +++ VG  G GKT +A+ VAR L V        V+ +AG    D+ ++LT        NL
Sbjct: 109 NIVMVGQTGTGKTLIAKTVARMLNVPLAIVDATVLTEAGYVGEDVESILTRLLQAADYNL 168

Query: 104 E--DRDVLFIDEIHRLS 118
           E   R ++FIDEI +++
Sbjct: 169 EKAQRGIVFIDEIDKIA 185


>gi|126462594|ref|YP_001043708.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodobacter
           sphaeroides ATCC 17029]
 gi|221639634|ref|YP_002525896.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodobacter
           sphaeroides KD131]
 gi|332558620|ref|ZP_08412942.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodobacter
           sphaeroides WS8N]
 gi|166215194|sp|A3PKS0|CLPX_RHOS1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|254763860|sp|B9KJU8|CLPX_RHOSK RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|126104258|gb|ABN76936.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhodobacter
           sphaeroides ATCC 17029]
 gi|221160415|gb|ACM01395.1| ATP-dependent Clp protease ATP-binding subunit clpX [Rhodobacter
           sphaeroides KD131]
 gi|332276332|gb|EGJ21647.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodobacter
           sphaeroides WS8N]
          Length = 421

 Score = 39.3 bits (90), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+            
Sbjct: 112 NILLIGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNV 171

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDE+ +++
Sbjct: 172 ERAQRGIVYIDEVDKIT 188


>gi|71000134|ref|XP_754784.1| DNA replication factor C subunit Rfc2 [Aspergillus fumigatus
          Af293]
 gi|66852421|gb|EAL92746.1| DNA replication factor C subunit Rfc2, putative [Aspergillus
          fumigatus Af293]
 gi|159127792|gb|EDP52907.1| DNA replication factor C subunit Rfc2, putative [Aspergillus
          fumigatus A1163]
          Length = 394

 Score = 39.3 bits (90), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+TL++   Q      L+  ++A+      L H+LF GPPG GKT+    +A+ L
Sbjct: 46 RPKTLDDVAAQDHTTKVLQRTLQASN-----LPHMLFYGPPGTGKTSTILALAKSL 96


>gi|322386419|ref|ZP_08060048.1| cell division protein FtsH [Streptococcus cristatus ATCC 51100]
 gi|321269505|gb|EFX52436.1| cell division protein FtsH [Streptococcus cristatus ATCC 51100]
          Length = 655

 Score = 39.3 bits (90), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL-EDRD-----V 108
           VL  GPPG GKT LA+ VA E GV F S SG    +   G  A+ + +L ED       +
Sbjct: 223 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRSLFEDAKKAAPAI 282

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 283 IFIDEI 288


>gi|315453105|ref|YP_004073375.1| ATP-dependent clp protease ATP-binding subunit clpX [Helicobacter
           felis ATCC 49179]
 gi|315132157|emb|CBY82785.1| ATP-dependent clp protease ATP-binding subunit clpX [Helicobacter
           felis ATCC 49179]
          Length = 446

 Score = 39.3 bits (90), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 14/81 (17%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L VGP G GKT +AQ +AR L +    +    + +AG    D+  +LT L        
Sbjct: 143 NILLVGPTGSGKTLMAQTLARFLNIPIAISDATSLTEAGYVGEDVENILTRLLQASDGDV 202

Query: 104 --EDRDVLFIDEIHRLSIIVE 122
               R ++FIDEI +++ + E
Sbjct: 203 ERAQRGIVFIDEIDKIARLSE 223


>gi|310829343|ref|YP_003961700.1| ATP-dependent metallopeptidase HflB subfamily protein [Eubacterium
           limosum KIST612]
 gi|308741077|gb|ADO38737.1| ATP-dependent metallopeptidase HflB subfamily protein [Eubacterium
           limosum KIST612]
          Length = 627

 Score = 39.3 bits (90), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F   SG
Sbjct: 200 VLLVGPPGTGKTLLARAVAGEAGVPFYIISG 230


>gi|308185155|ref|YP_003929288.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
           pylori SJM180]
 gi|308061075|gb|ADO02971.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
           pylori SJM180]
          Length = 448

 Score = 39.3 bits (90), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 14/81 (17%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT +AQ +A+ L +    +    + +AG    D+  +LT L        
Sbjct: 146 NILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNV 205

Query: 104 --EDRDVLFIDEIHRLSIIVE 122
               + ++FIDEI ++S + E
Sbjct: 206 QKAQKGIVFIDEIDKISRLSE 226


>gi|304311291|ref|YP_003810889.1| ATP-dependent Clp protease ATP-binding subunit [gamma
           proteobacterium HdN1]
 gi|301797024|emb|CBL45237.1| ATP-dependent Clp protease ATP-binding subunit [gamma
           proteobacterium HdN1]
          Length = 434

 Score = 39.3 bits (90), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 19/93 (20%)

Query: 45  EAAKARAE-----ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAAL 99
           ++AK R E     +  ++L +GP G GKT LA+ +AR L V F       + +AG +   
Sbjct: 108 KSAKGRGEGDIELSKSNILLIGPTGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGED 167

Query: 100 LTNL-------EDRDV-------LFIDEIHRLS 118
           + N+        D DV       ++IDEI ++S
Sbjct: 168 VENIIQKLLQKCDYDVEKAQVGIVYIDEIDKIS 200


>gi|298710533|emb|CBJ25597.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 268

 Score = 39.3 bits (90), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 8/72 (11%)

Query: 55  DHVLFVGPPGLGKTTLAQVVARELGVNFRS-TSGPVIAK-AGDLAALLTNLEDR------ 106
           ++VL  GPPG GKTT+AQ  ++E G  F S     +++K  G+   +L  L D       
Sbjct: 181 NNVLLHGPPGTGKTTIAQAASQEAGAAFYSVVPSSILSKYQGESERVLHQLFDDAKKTKP 240

Query: 107 DVLFIDEIHRLS 118
            V+F+DE+  L+
Sbjct: 241 SVIFLDELDALA 252


>gi|297616504|ref|YP_003701663.1| Sigma 54 interacting domain protein [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297144341|gb|ADI01098.1| Sigma 54 interacting domain protein [Syntrophothermus lipocalidus
           DSM 12680]
          Length = 556

 Score = 39.3 bits (90), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 8/108 (7%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           R +S  +   S  RP   EE  GQ E    LK  +     +     HV+  GPPG+GKT 
Sbjct: 52  RGISLTEPLSSKTRPSRFEEIVGQEEGIEALKAALCGPNPQ-----HVIIYGPPGVGKTA 106

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVL--FIDEIH 115
            A++V      +  S  G   A+  ++ A +T  ++R++    I  +H
Sbjct: 107 AARLVLEYAKADPLSPFGGQ-ARFVEIDATITRFDERNIADPLIGSVH 153


>gi|294678496|ref|YP_003579111.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Rhodobacter
           capsulatus SB 1003]
 gi|294477316|gb|ADE86704.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Rhodobacter
           capsulatus SB 1003]
          Length = 773

 Score = 39.3 bits (90), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 66/148 (44%), Gaps = 23/148 (15%)

Query: 10  RNVSQEDADISLLRPRTLEEFT-GQVEACSNLKVFIEAAKAR----AEALDHVLFVGPPG 64
           ++VS++DA I     +TL+    GQ +A   L   I+ A+A      + + + LF GP G
Sbjct: 449 KSVSKDDAAILRDLEKTLKRVVFGQDKAIETLASAIKLARAGLREPEKPIGNYLFAGPTG 508

Query: 65  LGKTTLAQVVARELGVNF---------------RSTSGPVIAKAGDLAALLTNLEDRD-- 107
           +GKT +A+ +A  LGV                 R    P      D   LLT+  D+   
Sbjct: 509 VGKTEVAKQLANTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGVDQHPH 568

Query: 108 -VLFIDEIHRLSIIVEEILYPAMEDFQL 134
            VL +DEI +    V  IL   M+  +L
Sbjct: 569 CVLLLDEIEKAHSDVFNILLQVMDHGKL 596


>gi|206602072|gb|EDZ38554.1| Probable ATPase, AAA family [Leptospirillum sp. Group II '5-way
           CG']
          Length = 444

 Score = 39.3 bits (90), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 49/117 (41%), Gaps = 7/117 (5%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
            SLL P   EEF GQ        +       R+     ++  GPPG GK+    ++ + L
Sbjct: 14  CSLLFPDRPEEFLGQPHLMGEGGILRRLIAVRS--FRSMVIHGPPGCGKSAFVHLLQKVL 71

Query: 79  GVNFR-----STSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
             +F        SG  + KA D            +L I+EI R +   +++L PA+E
Sbjct: 72  PFHFEVVRAGEASGGDLKKAMDRGVSYRQSGQDCLLVIEEIDRFTRTQQDVLVPALE 128


>gi|163858167|ref|YP_001632465.1| ATP-dependent protease La [Bordetella petrii DSM 12804]
 gi|163261895|emb|CAP44197.1| ATP-dependent protease La [Bordetella petrii]
          Length = 782

 Score = 39.3 bits (90), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 92/228 (40%), Gaps = 52/228 (22%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTS-GPVIAKA-------GDLAALLTNL----- 103
           + F GPPG+GKT+L Q +AR  G  F+  + G V  +A         L AL  N+     
Sbjct: 353 LCFAGPPGVGKTSLGQSIARATGRVFQRVALGGVHDEAEIRGHRRTYLGALPGNIIQAMR 412

Query: 104 ---EDRDVLFIDEIHRLSI---------IVEEILYPAMEDFQLDLMVGEGPSARSVKINL 151
               +  V+ +DEI +L            + E+L P       D  +G       V  +L
Sbjct: 413 RAGTNNAVVMLDEIDKLGAGGFHGDPGSALLEVLDPEQNHKFRDNYLG-------VDFDL 465

Query: 152 SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL-----KTIVQRGAKLTGLAVTDE 206
           S    I     +  +  PL+DR  I I+L  Y  E+      + +V+R  +  GL     
Sbjct: 466 SHVMFICTANMLETIPGPLRDRMEI-IQLPGYTEEEKVQIARRYLVRRQLEANGLTAGQA 524

Query: 207 AACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
              + A+ S     I G       D+   A  + + REI   A+LR A
Sbjct: 525 ELSDAALSS-----IVG-------DYTREAGVRQLEREI--GAVLRHA 558


>gi|168034138|ref|XP_001769570.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162679112|gb|EDQ65563.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 643

 Score = 39.3 bits (90), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 8/74 (10%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAAL----LTNL 103
           K  A    ++LF GPPG GKT  A+++A+E G+++   +G  +A  G  A      L N 
Sbjct: 389 KQHAAPYRNMLFHGPPGTGKTMAAKILAQESGLDYALMTGGDVAPLGADAVTKIHELFNW 448

Query: 104 EDRD----VLFIDE 113
             R     +LFIDE
Sbjct: 449 AGRSNKGLLLFIDE 462


>gi|157065028|gb|ABV04347.1| membrane protein FtsH1 [Toxoplasma gondii]
          Length = 1250

 Score = 39.3 bits (90), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV +   SG
Sbjct: 387 VLLVGPPGTGKTALARAVATEAGVPYFYASG 417


>gi|308812448|ref|XP_003083531.1| cell division protein (ISS) [Ostreococcus tauri]
 gi|116055412|emb|CAL58080.1| cell division protein (ISS) [Ostreococcus tauri]
          Length = 785

 Score = 39.3 bits (90), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 15/80 (18%)

Query: 43  FIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALL 100
           F+EA K        +L  GPPG GKT LA+ VA E G+ F   +G    +   G  A+ +
Sbjct: 331 FVEAPKG-------ILLEGPPGTGKTLLAKAVAGEAGLPFFYANGSEFVEMFVGVAASRM 383

Query: 101 TNLEDR------DVLFIDEI 114
            NL  R       ++FIDE+
Sbjct: 384 RNLFKRARTNAPAIIFIDEL 403


>gi|70997455|ref|XP_753475.1| LON domain serine protease [Aspergillus fumigatus Af293]
 gi|74673478|sp|Q4WVD9|LONP2_ASPFU RecName: Full=Lon protease homolog 2, peroxisomal
 gi|66851111|gb|EAL91437.1| LON domain serine protease, putative [Aspergillus fumigatus Af293]
          Length = 932

 Score = 39.3 bits (90), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 69/163 (42%), Gaps = 33/163 (20%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTS-GPVIAKA----------GDLAALLTNLED 105
           +L VGPPG GKT+LA+ VA  LG  F   S G V  +A            +  L+ N   
Sbjct: 482 LLLVGPPGTGKTSLARSVATSLGRKFHRISLGGVRDEAEIRGHRRTYVAAMPGLIVNGLK 541

Query: 106 R-----DVLFIDEIHRL---------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINL 151
           +      V  +DEI ++         S  + E+L P      +D  +       ++ I+L
Sbjct: 542 KVGVANPVFLLDEIDKVGGANFQGDPSAAMLEVLDPEQNSTFVDHYI-------NIPIDL 594

Query: 152 SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           S+   IA    +  +  PL DR    I L+ Y   + + I +R
Sbjct: 595 SKVLFIATANSLDTIPAPLLDRMET-ITLSGYTTVEKRHIAKR 636


>gi|328551770|gb|AEB22262.1| cell-division protein and general stress protein (class III
           heat-shock) [Bacillus amyloliquefaciens TA208]
          Length = 639

 Score = 39.3 bits (90), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           VL VGPPG GKT LA+  A E GV F S SG       V   A  +  L  N +     +
Sbjct: 197 VLLVGPPGTGKTLLARASAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCL 256

Query: 109 LFIDEI 114
           +FIDEI
Sbjct: 257 IFIDEI 262


>gi|322700953|gb|EFY92705.1| ATP-dependent protease La [Metarhizium acridum CQMa 102]
          Length = 1118

 Score = 39.3 bits (90), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 79/204 (38%), Gaps = 43/204 (21%)

Query: 43  FIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA---- 97
           FI   K R      +L FVGPPG+GKT++ + +AR L   +   S   +    ++     
Sbjct: 585 FIAVGKLRGTVEGKILCFVGPPGVGKTSIGKSIARALNREYYRFSVGGLTDVAEIKGHRR 644

Query: 98  ------------ALLTNLEDRDVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLM 137
                       AL     +  ++ IDE+ ++        S  + E+L P      LD  
Sbjct: 645 TYVGALPGRIIQALKKCQTENPLILIDEVDKIGRGYQGDPSSALLELLDPEQNSSFLDHY 704

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR--- 194
           +        V ++LS+   +        +  PL DR  + I L+ Y  ++ K I      
Sbjct: 705 M-------DVPVDLSKVLFVCTANMTDTIPRPLLDRMEL-ITLSGYVADEKKAIANTYLA 756

Query: 195 -------GAKLTGLAVTDEAACEI 211
                  G K   + +TDEA  E+
Sbjct: 757 PAAKDAAGLKGANVNLTDEAVEEL 780


>gi|320450068|ref|YP_004202164.1| ATP-dependent protease La [Thermus scotoductus SA-01]
 gi|320150237|gb|ADW21615.1| ATP-dependent protease La [Thermus scotoductus SA-01]
          Length = 818

 Score = 39.3 bits (90), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 85/226 (37%), Gaps = 49/226 (21%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD----------------LAALL 100
           +LFVGPPG+GKT++A+ +A  LG  +   S   +    D                +  L 
Sbjct: 368 LLFVGPPGVGKTSIAKSIAEALGRKYVRISLGGVRDESDIRGHRRTYIGAMPGRIIQGLR 427

Query: 101 TNLEDRDVLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLS 152
                  V  +DE+ +L I  +        E+L PA     +D  +G       V  +LS
Sbjct: 428 QAGTKNPVFLLDEVDKLGISYQGDPAAALLEVLDPAQNKEFVDHYLG-------VPFDLS 480

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL----KTIVQRGAKLTGLAVTDEAA 208
               I        +  PL DR       ++ E E L    + ++ R  + TGL       
Sbjct: 481 EVMFICTANFPQNIPAPLWDRMEAIEFTSYIEQEKLEIAKRYLLPRQMRETGLLEGQVVI 540

Query: 209 CEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            E A            L+R +  +   A  + + REI   +LLR A
Sbjct: 541 TEAA------------LMRLITHYTREAGVRQLEREI--GSLLRKA 572


>gi|326782164|ref|YP_004322565.1| clamp loader subunit [Prochlorococcus phage P-HM1]
 gi|310004371|gb|ADO98764.1| clamp loader subunit [Prochlorococcus phage P-HM1]
          Length = 313

 Score = 39.3 bits (90), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 15/121 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+ +E      +     K F++A +     + ++L  G  G+GKTT+A+ +  ELGV+ 
Sbjct: 11  RPKNIEHCILPDDLKKTFKSFVDAGE-----VPNLLLCGTAGIGKTTVAKALCHELGVDS 65

Query: 83  RSTSGP--------VIAKAGDLAAL--LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
              +G         V   A   A+   LT+     V+ IDE    +  V+ +L  ++E+F
Sbjct: 66  IVINGSDEGRFLDTVRNSAKQFASTVSLTSSAKHKVIIIDEADNTTHDVQLLLRASIEEF 125

Query: 133 Q 133
           Q
Sbjct: 126 Q 126


>gi|309799286|ref|ZP_07693534.1| putative Cell division protein FtsH [Streptococcus infantis SK1302]
 gi|308117131|gb|EFO54559.1| putative Cell division protein FtsH [Streptococcus infantis SK1302]
          Length = 652

 Score = 39.3 bits (90), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 223 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISG 253


>gi|307638046|gb|ADN80496.1| ATP-dependent Clp protease ATP-binding subunit [Helicobacter pylori
           908]
 gi|325996650|gb|ADZ52055.1| ATP-dependent Clp protease ATP-binding subunit [Helicobacter pylori
           2018]
 gi|325998239|gb|ADZ50447.1| ATP-dependent Clp protease ATP-binding subunit [Helicobacter pylori
           2017]
          Length = 452

 Score = 39.3 bits (90), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 14/81 (17%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT +AQ +A+ L +    +    + +AG    D+  +LT L        
Sbjct: 150 NILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNV 209

Query: 104 --EDRDVLFIDEIHRLSIIVE 122
               + ++FIDEI ++S + E
Sbjct: 210 QKAQKGIVFIDEIDKISRLSE 230


>gi|307610563|emb|CBX00151.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Legionella
           pneumophila 130b]
          Length = 424

 Score = 39.3 bits (90), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDV 108
           ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+        D DV
Sbjct: 112 NILLIGPTGSGKTLLAQTLARILNVPFAMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 171

Query: 109 -------LFIDEIHRLS 118
                  ++IDEI ++S
Sbjct: 172 DKAQQGIVYIDEIDKIS 188


>gi|301793338|emb|CBW35697.1| putative putative cell division protease FtsH [Streptococcus
           pneumoniae INV104]
          Length = 652

 Score = 39.3 bits (90), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 223 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISG 253


>gi|296220658|ref|XP_002756429.1| PREDICTED: 26S protease regulatory subunit S10B-like [Callithrix
           jacchus]
          Length = 442

 Score = 39.3 bits (90), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 56/124 (45%), Gaps = 23/124 (18%)

Query: 8   LSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV--------L 58
           L  N+S ED  ++S        E  G  E    L+  IE      E    V        L
Sbjct: 171 LVYNMSHEDPGNVSY------SEIGGLSEQIRGLREVIELPLTNPELFQRVGIIPPKGCL 224

Query: 59  FVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA-GDLAALLTNLED--RD----VLF 110
             GPPG GKT LA+ VA +L  NF +  S  ++ K  G+ A L+  + +  RD    ++F
Sbjct: 225 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESAHLIREMFNYARDHQPCIIF 284

Query: 111 IDEI 114
           +DEI
Sbjct: 285 MDEI 288


>gi|294884501|ref|XP_002771144.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
 gi|239874463|gb|EER02960.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
          Length = 100

 Score = 39.3 bits (90), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 5/60 (8%)

Query: 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          +   RP  +EE   Q E    LK  +         L H+LF GPPG GKT+    +AREL
Sbjct: 13 VEKYRPARVEELAHQPEVVGALKEAVGTGN-----LPHLLFYGPPGNGKTSAILALAREL 67


>gi|226290113|gb|EEH45597.1| proteasome-activating nucleotidase [Paracoccidioides brasiliensis
           Pb18]
          Length = 813

 Score = 39.3 bits (90), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F   SG
Sbjct: 381 VLLVGPPGTGKTLLARAVAGEAGVPFFYMSG 411


>gi|225855748|ref|YP_002737259.1| ATP-dependent metallopeptidase HflB [Streptococcus pneumoniae
           P1031]
 gi|225724440|gb|ACO20292.1| ATP-dependent metallopeptidase HflB [Streptococcus pneumoniae
           P1031]
          Length = 652

 Score = 39.3 bits (90), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 223 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISG 253


>gi|208435267|ref|YP_002266933.1| ATP-dependent protease ATPase subunit [Helicobacter pylori G27]
 gi|208433196|gb|ACI28067.1| ATP-dependent protease ATPase subunit [Helicobacter pylori G27]
          Length = 448

 Score = 39.3 bits (90), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 14/81 (17%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT +AQ +A+ L +    +    + +AG    D+  +LT L        
Sbjct: 146 NILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNV 205

Query: 104 --EDRDVLFIDEIHRLSIIVE 122
               + ++FIDEI ++S + E
Sbjct: 206 QKAQKGIVFIDEIDKISRLSE 226


>gi|224534186|ref|ZP_03674765.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia
           spielmanii A14S]
 gi|224514547|gb|EEF84862.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia
           spielmanii A14S]
          Length = 435

 Score = 39.3 bits (90), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALL----------T 101
           ++L VGP G GKT LA+ +A E+ V F       + +AG    D+  +L           
Sbjct: 117 NILLVGPTGSGKTLLAKTLASEMNVPFAIADATTLTEAGYVGEDVENILLKLIHAAHGDV 176

Query: 102 NLEDRDVLFIDEIHRLS 118
           +L ++ +++IDEI +++
Sbjct: 177 SLAEKGIIYIDEIDKIA 193


>gi|157151579|ref|YP_001451358.1| cell division protein ftsH-like protein [Streptococcus gordonii
           str. Challis substr. CH1]
 gi|157076373|gb|ABV11056.1| Cell division protein ftsH-like protein [Streptococcus gordonii
           str. Challis substr. CH1]
          Length = 660

 Score = 39.3 bits (90), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 224 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISG 254


>gi|158521239|ref|YP_001529109.1| ATPase [Desulfococcus oleovorans Hxd3]
 gi|158510065|gb|ABW67032.1| ATPase AAA-2 domain protein [Desulfococcus oleovorans Hxd3]
          Length = 597

 Score = 39.3 bits (90), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 14/78 (17%)

Query: 55  DHVLFVGPPGLGKTTLAQVVARELGVNF-------RSTSGPVIAKAGDLAALLTNLEDRD 107
           ++VL +GP G+GKT + +++A++LGV F        S +G V     DL   L    D D
Sbjct: 112 NNVLMIGPTGVGKTYMIRLIAKKLGVPFVKGDATKFSETGYVGGDVEDLVRDLVREADND 171

Query: 108 -------VLFIDEIHRLS 118
                  +++IDEI +++
Sbjct: 172 IERAQFGIIYIDEIDKIA 189


>gi|110803260|ref|YP_697892.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens SM101]
 gi|110683761|gb|ABG87131.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens SM101]
          Length = 713

 Score = 39.3 bits (90), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 34/65 (52%), Gaps = 8/65 (12%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--VL 109
           L VGPPG GKT LA+ VA E  V F S SG    +      A  +  L    E++   ++
Sbjct: 203 LLVGPPGTGKTLLAKAVAGEAKVPFFSMSGSDFVEMFVGMGAARVRDLFKQAEEKAPCIV 262

Query: 110 FIDEI 114
           FIDEI
Sbjct: 263 FIDEI 267


>gi|71903770|ref|YP_280573.1| DNA polymerase III subunits gamma and tau [Streptococcus pyogenes
           MGAS6180]
 gi|71802865|gb|AAX72218.1| DNA polymerase III subunit gamma/tau [Streptococcus pyogenes
           MGAS6180]
          Length = 561

 Score = 39.3 bits (90), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 8/91 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           R +T +E  GQ    + LK  +E+ K     + H  LF GP G GKT+ A++ A+ +   
Sbjct: 10  RSQTFDEMVGQSVISTTLKQAVESGK-----ISHAYLFSGPRGTGKTSAAKIFAKAMNCP 64

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID 112
            +    P      D+   +TN    DV+ ID
Sbjct: 65  NQVDGEPC--NQCDICRDITNGSLEDVIEID 93


>gi|33239707|ref|NP_874649.1| cell division protein FtsH2 [Prochlorococcus marinus subsp. marinus
           str. CCMP1375]
 gi|33237232|gb|AAP99301.1| Cell division protein FtsH [Prochlorococcus marinus subsp. marinus
           str. CCMP1375]
          Length = 599

 Score = 39.3 bits (90), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E  V F S SG
Sbjct: 180 VLLVGPPGTGKTLLAKAVAGEAAVPFFSISG 210


>gi|61211423|sp|Q5ZUE0|CLPX_LEGPH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
          Length = 424

 Score = 39.3 bits (90), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDV 108
           ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+        D DV
Sbjct: 112 NILLIGPTGSGKTLLAQTLARILNVPFAMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 171

Query: 109 -------LFIDEIHRLS 118
                  ++IDEI ++S
Sbjct: 172 DKAQQGIVYIDEIDKIS 188


>gi|116195888|ref|XP_001223756.1| hypothetical protein CHGG_04542 [Chaetomium globosum CBS 148.51]
 gi|88180455|gb|EAQ87923.1| hypothetical protein CHGG_04542 [Chaetomium globosum CBS 148.51]
          Length = 414

 Score = 39.3 bits (90), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 19/26 (73%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF 82
           VL  GPPG GKT LA+ VARE G +F
Sbjct: 150 VLLYGPPGCGKTMLAKAVARESGASF 175


>gi|146277489|ref|YP_001167648.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodobacter
           sphaeroides ATCC 17025]
 gi|166215195|sp|A4WSH9|CLPX_RHOS5 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|145555730|gb|ABP70343.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 421

 Score = 39.3 bits (90), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+            
Sbjct: 112 NILLIGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNV 171

Query: 104 --EDRDVLFIDEIHRLS 118
               R +++IDE+ +++
Sbjct: 172 ERAQRGIVYIDEVDKIT 188


>gi|332018668|gb|EGI59240.1| Peroxisome biogenesis factor 1 [Acromyrmex echinatior]
          Length = 914

 Score = 39.3 bits (90), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 20/32 (62%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
           VL  G PG GKT LA+ +A E GVN  S  GP
Sbjct: 674 VLLYGMPGTGKTMLAKAIASECGVNLISIKGP 705


>gi|331003929|ref|ZP_08327418.1| hypothetical protein HMPREF0491_02280 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330411949|gb|EGG91349.1| hypothetical protein HMPREF0491_02280 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 608

 Score = 39.3 bits (90), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           ++ VGPPG GKT LA+ VA E GV F + SG
Sbjct: 204 IILVGPPGTGKTLLAKAVAGEAGVPFFTISG 234


>gi|327282022|ref|XP_003225743.1| PREDICTED: replication factor C subunit 4-like [Anolis
          carolinensis]
          Length = 364

 Score = 39.3 bits (90), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+ ++E   Q E  + LK  ++ A      L ++LF GPPG GKT+     AREL
Sbjct: 46 RPKCMDEVAFQEEVVAVLKKCLQGAD-----LPNLLFYGPPGTGKTSTILAAAREL 96


>gi|325954172|ref|YP_004237832.1| ATP-dependent metalloprotease FtsH [Weeksella virosa DSM 16922]
 gi|323436790|gb|ADX67254.1| ATP-dependent metalloprotease FtsH [Weeksella virosa DSM 16922]
          Length = 670

 Score = 39.3 bits (90), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 34/65 (52%), Gaps = 8/65 (12%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DVL 109
           L VGPPG GKT LA+ VA E  V F S SG       V   A  +  L  N + +   ++
Sbjct: 233 LLVGPPGTGKTLLAKAVAGEAKVPFFSLSGSDFVEMFVGVGASRVRDLFANAKAKSPSII 292

Query: 110 FIDEI 114
           FIDEI
Sbjct: 293 FIDEI 297


>gi|319938041|ref|ZP_08012441.1| ATP-dependent Zn protease [Coprobacillus sp. 29_1]
 gi|319806947|gb|EFW03586.1| ATP-dependent Zn protease [Coprobacillus sp. 29_1]
          Length = 546

 Score = 39.3 bits (90), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 11/75 (14%)

Query: 24  PRTLEEFTGQVEACSNLKV-------FIEAAKARAEALDHV----LFVGPPGLGKTTLAQ 72
           P  ++     V  CS +K        F++  +   E   H+    LF+GPPG GKT LA+
Sbjct: 110 PDNMKTRMSDVAGCSEVKEDLMEVIDFLKNPQKYNEMGAHIPHGILFMGPPGTGKTMLAR 169

Query: 73  VVARELGVNFRSTSG 87
            VA E  V +   SG
Sbjct: 170 AVAGEANVKYIYCSG 184


>gi|313887830|ref|ZP_07821510.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Peptoniphilus
           harei ACS-146-V-Sch2b]
 gi|312846173|gb|EFR33554.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Peptoniphilus
           harei ACS-146-V-Sch2b]
          Length = 405

 Score = 39.3 bits (90), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
           ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+            
Sbjct: 108 NILMIGPTGSGKTLLAQTLARLLNVPFAIADATTLTEAGYVGEDVENIILKLIQNADYDI 167

Query: 104 --EDRDVLFIDEIHRLS 118
              ++ +++IDEI +++
Sbjct: 168 ERAEKGIIYIDEIDKIA 184


>gi|303241119|ref|ZP_07327628.1| ATP-dependent protease La [Acetivibrio cellulolyticus CD2]
 gi|302591379|gb|EFL61118.1| ATP-dependent protease La [Acetivibrio cellulolyticus CD2]
          Length = 811

 Score = 39.3 bits (90), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 62/265 (23%), Positives = 112/265 (42%), Gaps = 39/265 (14%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA--------------GDLAALLT 101
           +  VGPPG+GKT++A+ +A+ L  N+ R + G V  +A              G + A L 
Sbjct: 356 LCLVGPPGVGKTSIAKSIAKALNRNYVRMSLGGVRDEAEIRGHRRTYVGAMPGRIIAALK 415

Query: 102 NLEDRD-VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSA-----RSVKINLSRFT 155
             + ++ ++ +DEI ++S         AM    L+++ GE   A       +  +LS   
Sbjct: 416 QADSKNPLILLDEIDKMSNDFRGDPASAM----LEVLDGEQNFAFRDHYMELPFDLSDVL 471

Query: 156 LIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL---------KTIVQRGAKLTGLAVTDE 206
            +     +  +  PL DR  +    ++ E E +         K I   G K   + V ++
Sbjct: 472 FLTTANSLDTIPRPLLDRMEVISLTSYTEEEKVNISTRYLFPKQIEAHGLKKESVKVDEQ 531

Query: 207 AACEI---AMRSRGTPRIAGRLLRRVRDFA-EVAHAKTITREIADAALLR-LAIDKMGFD 261
           A  +I     R  G   +  ++    R  A ++  +K  + +I  A L + L   K  +D
Sbjct: 532 AVRDIINCYTREAGVRNLERQIATVCRKVAKKLVSSKQHSIKITSANLEKFLGTKKYRYD 591

Query: 262 QLDLRYLTMIARNFGGGPVGIETIS 286
           + + +    IA      PVG +T+S
Sbjct: 592 KANEKDDVGIATGLAWTPVGGDTLS 616


>gi|239627918|ref|ZP_04670949.1| ATP-dependent metalloprotease FtsH [Clostridiales bacterium
           1_7_47_FAA]
 gi|239518064|gb|EEQ57930.1| ATP-dependent metalloprotease FtsH [Clostridiales bacterium
           1_7_47FAA]
          Length = 625

 Score = 39.3 bits (90), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 33/65 (50%), Gaps = 8/65 (12%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--VL 109
           L VGPPG GKT LA+ VA E  V F S SG    +      A  +  L     D+   ++
Sbjct: 216 LLVGPPGTGKTLLARAVAGEAHVPFFSISGSEFVEMFVGMGAAKVRDLFKQANDKAPCIV 275

Query: 110 FIDEI 114
           FIDEI
Sbjct: 276 FIDEI 280


>gi|262196734|ref|YP_003267943.1| ATP-dependent metalloprotease FtsH [Haliangium ochraceum DSM 14365]
 gi|310943130|sp|D0LWB8|FTSH_HALO1 RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|262080081|gb|ACY16050.1| ATP-dependent metalloprotease FtsH [Haliangium ochraceum DSM 14365]
          Length = 682

 Score = 39.3 bits (90), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 22/31 (70%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL +GPPG GKT LA+ +A E GV F S SG
Sbjct: 228 VLMMGPPGTGKTLLARAIAGEAGVPFFSISG 258


>gi|169351620|ref|ZP_02868558.1| hypothetical protein CLOSPI_02400 [Clostridium spiroforme DSM
          1552]
 gi|169291842|gb|EDS73975.1| hypothetical protein CLOSPI_02400 [Clostridium spiroforme DSM
          1552]
          Length = 593

 Score = 39.3 bits (90), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 4/58 (6%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
          RP+T +E  GQ    + LK  I+  +  A A    LF GP G GKTT+A+++A+ L  
Sbjct: 11 RPQTFDEVAGQEHIVTTLKNAIKENRI-AHAY---LFAGPRGTGKTTVAKLLAKALNC 64


>gi|169823651|ref|YP_001691154.1| hypothetical protein FMG_P0137 [Finegoldia magna ATCC 29328]
 gi|167832271|dbj|BAG09186.1| conserved hypothetical protein [Finegoldia magna ATCC 29328]
          Length = 513

 Score = 39.3 bits (90), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 72/174 (41%), Gaps = 34/174 (19%)

Query: 55  DHVLFVGPPGLGKTTLAQVVA------------RELGVNFRSTSGPVIAKAGDLAALLTN 102
           +H++F G PG GKTT+A+++A            R + VN  S     + +       + +
Sbjct: 292 NHMIFYGEPGTGKTTVARIIAGLLYKLGITRKNRCVQVNGESLKAEYVGQTAPKVQKVID 351

Query: 103 LEDRDVLFIDEIHRLSII-----VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLI 157
                VLFIDE + L+ +        +L   MED + DL++        ++  ++     
Sbjct: 352 AAVGGVLFIDEAYALNDVHYGKEAVNVLLQNMEDKKDDLVIILAGYENDMQDLMN----- 406

Query: 158 AATTRVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACE 210
                     NP L+ R G  I+   Y   +L  I +   K  GL ++ +  CE
Sbjct: 407 ---------VNPGLKSRIGYWIKFESYNANELLDIFKFSLKKKGLGLSSD--CE 449


>gi|146296519|ref|YP_001180290.1| ATP-dependent protease La [Caldicellulosiruptor saccharolyticus DSM
           8903]
 gi|302425039|sp|A4XJL4|LON_CALS8 RecName: Full=Lon protease; AltName: Full=ATP-dependent protease La
 gi|145410095|gb|ABP67099.1| ATP-dependent proteinase, Serine peptidase, MEROPS family S16
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 774

 Score = 39.3 bits (90), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLA 71
           S+E  DI++++    E+  G  +    +  +I   K +      +L  VGPPG+GKT++A
Sbjct: 308 SEEKIDINVVKNVLDEDHYGLTKVKERILEYIAVRKLKNNLKGPILCLVGPPGVGKTSIA 367

Query: 72  QVVARELGVNF 82
           + +AR L  N+
Sbjct: 368 KSIARALNRNY 378


>gi|150402945|ref|YP_001330239.1| ATPase central domain-containing protein [Methanococcus maripaludis
           C7]
 gi|150033975|gb|ABR66088.1| AAA ATPase central domain protein [Methanococcus maripaludis C7]
          Length = 371

 Score = 39.3 bits (90), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 4/63 (6%)

Query: 22  LRPRTLEEFTGQVEACSNLKV---FIEAAKARAE-ALDHVLFVGPPGLGKTTLAQVVARE 77
            +    EE  GQ++A    K+   ++E  +   E A  ++LF GPPG GKT LA+ +A E
Sbjct: 120 FKETNFEEVIGQLDAKKKCKIVIKYLENPEIFGEWAPKNILFYGPPGTGKTMLARALATE 179

Query: 78  LGV 80
             V
Sbjct: 180 TEV 182


>gi|145607029|ref|XP_361452.2| hypothetical protein MGG_03926 [Magnaporthe oryzae 70-15]
 gi|145014635|gb|EDJ99203.1| hypothetical protein MGG_03926 [Magnaporthe oryzae 70-15]
          Length = 618

 Score = 39.3 bits (90), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F   SG
Sbjct: 182 VLLVGPPGTGKTLLARAVAGEAGVPFFYMSG 212


>gi|126640550|ref|YP_001083534.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter
           baumannii ATCC 17978]
          Length = 364

 Score = 39.3 bits (90), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 14/80 (17%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------ED 105
           A  ++L +GP G GKT LAQ +AR L V F       + +AG +   + N+        D
Sbjct: 37  AKSNILLIGPTGSGKTLLAQTLARLLDVPFAMADATTLTEAGYVGEDVENIVQKLLQKAD 96

Query: 106 RDV-------LFIDEIHRLS 118
            DV       ++IDEI +++
Sbjct: 97  YDVEKAQKGIIYIDEIDKIT 116


>gi|119500238|ref|XP_001266876.1| intermembrane space AAA protease IAP-1 [Neosartorya fischeri NRRL
           181]
 gi|119415041|gb|EAW24979.1| intermembrane space AAA protease IAP-1 [Neosartorya fischeri NRRL
           181]
          Length = 821

 Score = 39.3 bits (90), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F   SG
Sbjct: 389 VLLVGPPGTGKTLLARAVAGEAGVPFFYMSG 419


>gi|119492485|ref|XP_001263608.1| DNA replication factor C subunit Rfc2, putative [Neosartorya
          fischeri NRRL 181]
 gi|119411768|gb|EAW21711.1| DNA replication factor C subunit Rfc2, putative [Neosartorya
          fischeri NRRL 181]
          Length = 420

 Score = 39.3 bits (90), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          RP+TL++   Q      L+  ++A+      L H+LF GPPG GKT+    +A+ L
Sbjct: 44 RPKTLDDVAAQDHTTKVLQRTLQASN-----LPHMLFYGPPGTGKTSTILALAKSL 94


>gi|94266225|ref|ZP_01289933.1| AAA ATPase, central region [delta proteobacterium MLMS-1]
 gi|93453198|gb|EAT03659.1| AAA ATPase, central region [delta proteobacterium MLMS-1]
          Length = 600

 Score = 39.3 bits (90), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 14/78 (17%)

Query: 55  DHVLFVGPPGLGKTTLAQVVARELGVNFR-------STSGPVIAKAGDLAALLTNLEDRD 107
           ++VL +GP G+GKT L +++AR LGV F        S +G V     DL   L    D D
Sbjct: 130 NNVLLIGPTGVGKTYLIKLIARHLGVPFVKGDATKFSETGYVGGDVDDLIRDLVREADHD 189

Query: 108 -------VLFIDEIHRLS 118
                  ++++DE+ +++
Sbjct: 190 LERARFGIVYLDEVDKIA 207


>gi|38606907|gb|AAR25446.1| Clp protease [Lactobacillus johnsonii]
          Length = 395

 Score = 39.3 bits (90), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 54/126 (42%), Gaps = 26/126 (20%)

Query: 25  RTLEEFT-GQVEACSNLKVFIEAAKARAEALD-----------HVLFVGPPGLGKTTLAQ 72
           + L+E+  GQ  A   L V +     R   +D           ++  +GP G GKT LAQ
Sbjct: 43  KQLDEYVIGQDRAKKVLSVAVYNHYKRISQMDIDSTGTELQKSNIALIGPTGSGKTYLAQ 102

Query: 73  VVARELGVNFRSTSGPVIAKAGD--------LAALLTNLE------DRDVLFIDEIHRLS 118
            +A+ L V F       + +AG         L  LL N +       R +++IDEI ++S
Sbjct: 103 TLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDIERAQRGIIYIDEIDKIS 162

Query: 119 IIVEEI 124
              E +
Sbjct: 163 KKAENV 168


>gi|124512692|ref|XP_001349479.1| AAA family ATPase, putative [Plasmodium falciparum 3D7]
 gi|23499248|emb|CAD51328.1| AAA family ATPase, putative [Plasmodium falciparum 3D7]
          Length = 1467

 Score = 39.3 bits (90), Expect = 0.88,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 9/74 (12%)

Query: 55  DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD- 107
           D +LF G  G GKT LA+ +A+EL  +F   SG         + A  +  L    +  + 
Sbjct: 697 DTILFSGDTGTGKTMLAKTMAKELNFDFLHVSGSTFIELYIGSGASKIRTLFKKAKKNNK 756

Query: 108 --VLFIDEIHRLSI 119
             V+FIDEI  + I
Sbjct: 757 PMVIFIDEIDSIGI 770


>gi|77918603|ref|YP_356418.1| ATP-dependent zinc protease/ cell division protein [Pelobacter
           carbinolicus DSM 2380]
 gi|77544686|gb|ABA88248.1| membrane protease FtsH catalytic subunit [Pelobacter carbinolicus
           DSM 2380]
          Length = 616

 Score = 39.3 bits (90), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT L + +A E GV F S SG
Sbjct: 189 VLLVGPPGTGKTLLGRAIAGEAGVPFFSISG 219


>gi|42525986|ref|NP_971084.1| cell division protein FtsH [Treponema denticola ATCC 35405]
 gi|41816036|gb|AAS10965.1| cell division protein FtsH [Treponema denticola ATCC 35405]
 gi|325475667|gb|EGC78843.1| cell division protein FtsH [Treponema denticola F0402]
          Length = 658

 Score = 39.3 bits (90), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E GV F   SG
Sbjct: 241 VLLVGPPGTGKTLLARAVAGEAGVPFFRISG 271


>gi|33864065|ref|NP_895625.1| cell division protein FtsH2 [Prochlorococcus marinus str. MIT 9313]
 gi|33635649|emb|CAE21973.1| cell division protein FtsH2 [Prochlorococcus marinus str. MIT 9313]
          Length = 615

 Score = 39.3 bits (90), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL VGPPG GKT LA+ VA E  V F S SG
Sbjct: 196 VLLVGPPGTGKTLLAKAVAGEAAVPFFSISG 226


>gi|15899962|ref|NP_344566.1| cell division protein FtsH [Streptococcus pneumoniae TIGR4]
 gi|18266790|sp|O69076|FTSH_STRPN RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|14971477|gb|AAK74206.1| cell division protein FtsH [Streptococcus pneumoniae TIGR4]
          Length = 652

 Score = 39.3 bits (90), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 223 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISG 253


>gi|254495063|ref|ZP_05107987.1| ATP-dependent Clp protease ATP-binding subunit [Polaribacter sp.
           MED152]
 gi|85819413|gb|EAQ40570.1| ATP-dependent Clp protease ATP-binding subunit [Polaribacter sp.
           MED152]
          Length = 412

 Score = 39.3 bits (90), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 14/77 (18%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           +++ VG  G GKT +A+ +A+ L V F      V+ +AG    D+ ++L+ L        
Sbjct: 111 NIVLVGETGTGKTLVAKTIAKMLNVPFSIVDATVLTQAGYVGEDVESILSRLLQVADYDV 170

Query: 104 --EDRDVLFIDEIHRLS 118
              +R ++FIDEI +++
Sbjct: 171 EKAERGIVFIDEIDKIA 187


>gi|332365107|gb|EGJ42872.1| cell division protein FtsH [Streptococcus sanguinis SK355]
          Length = 659

 Score = 39.3 bits (90), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 224 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISG 254


>gi|321444018|gb|EFX60267.1| hypothetical protein DAPPUDRAFT_19763 [Daphnia pulex]
          Length = 83

 Score = 39.3 bits (90), Expect = 0.89,   Method: Composition-based stats.
 Identities = 18/34 (52%), Positives = 21/34 (61%)

Query: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
          VL VGPPG GKT LA+ VA E G  F + S   +
Sbjct: 46 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTL 79


>gi|322375228|ref|ZP_08049742.1| cell division protein FtsH [Streptococcus sp. C300]
 gi|321280728|gb|EFX57767.1| cell division protein FtsH [Streptococcus sp. C300]
          Length = 652

 Score = 39.3 bits (90), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 223 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISG 253


>gi|322388492|ref|ZP_08062095.1| cell division protein FtsH [Streptococcus infantis ATCC 700779]
 gi|321140805|gb|EFX36307.1| cell division protein FtsH [Streptococcus infantis ATCC 700779]
          Length = 652

 Score = 39.3 bits (90), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 223 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISG 253


>gi|319945969|ref|ZP_08020218.1| cell division protein FtsH [Streptococcus australis ATCC 700641]
 gi|319747777|gb|EFW00022.1| cell division protein FtsH [Streptococcus australis ATCC 700641]
          Length = 657

 Score = 39.3 bits (90), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 224 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISG 254


>gi|317011705|gb|ADU85452.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
           pylori SouthAfrica7]
          Length = 452

 Score = 39.3 bits (90), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 14/81 (17%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-------- 103
           ++L +GP G GKT +AQ +A+ L +    +    + +AG    D+  +LT L        
Sbjct: 150 NILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNV 209

Query: 104 --EDRDVLFIDEIHRLSIIVE 122
               + ++FIDEI ++S + E
Sbjct: 210 QKAQKGIVFIDEIDKISRLSE 230


>gi|315612147|ref|ZP_07887062.1| cell division protein FtsH [Streptococcus sanguinis ATCC 49296]
 gi|315315708|gb|EFU63745.1| cell division protein FtsH [Streptococcus sanguinis ATCC 49296]
          Length = 652

 Score = 39.3 bits (90), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 223 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISG 253


>gi|306828584|ref|ZP_07461778.1| cell division protein FtsH [Streptococcus mitis ATCC 6249]
 gi|304429192|gb|EFM32278.1| cell division protein FtsH [Streptococcus mitis ATCC 6249]
          Length = 652

 Score = 39.3 bits (90), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           VL  GPPG GKT LA+ VA E GV F S SG
Sbjct: 223 VLLEGPPGTGKTLLAKAVAGEAGVPFFSISG 253


Searching..................................................done


Results from round 2




>gi|254780552|ref|YP_003064965.1| Holliday junction DNA helicase RuvB [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040229|gb|ACT57025.1| Holliday junction DNA helicase RuvB [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 334

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 334/334 (100%), Positives = 334/334 (100%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV
Sbjct: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII
Sbjct: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL
Sbjct: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT
Sbjct: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI
Sbjct: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR
Sbjct: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334


>gi|315122879|ref|YP_004063368.1| Holliday junction DNA helicase RuvB [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313496281|gb|ADR52880.1| Holliday junction DNA helicase RuvB [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 344

 Score =  414 bits (1065), Expect = e-114,   Method: Composition-based stats.
 Identities = 302/334 (90%), Positives = 321/334 (96%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M DREGLLS +VS+ED D+ LLRPRTL+EFTGQ EACSNLKVFIEAAKAR+EALDHVLFV
Sbjct: 1   MTDREGLLSHSVSKEDGDVLLLRPRTLDEFTGQTEACSNLKVFIEAAKARSEALDHVLFV 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII
Sbjct: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL+NPLQDRFGIPIRL
Sbjct: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLSNPLQDRFGIPIRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           NFYE+EDLKTIV RGAKL GL +TDEAA EIAMRSRGTPRIAGRLLRRVRDFAEVAHA+ 
Sbjct: 181 NFYEVEDLKTIVHRGAKLIGLPITDEAAYEIAMRSRGTPRIAGRLLRRVRDFAEVAHAEI 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           ITR+IAD AL+RL++DKMGFDQLD+RYLTMIAR+FGGGPVGIETISAGLSEPRDAIEDLI
Sbjct: 241 ITRDIADEALVRLSVDKMGFDQLDVRYLTMIARHFGGGPVGIETISAGLSEPRDAIEDLI 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           EPYMIQ+GFIQRTPRGRLLMP AW+HLGI IP++
Sbjct: 301 EPYMIQKGFIQRTPRGRLLMPSAWKHLGISIPYK 334


>gi|253997449|ref|YP_003049513.1| Holliday junction DNA helicase RuvB [Methylotenera mobilis JLW8]
 gi|253984128|gb|ACT48986.1| Holliday junction DNA helicase RuvB [Methylotenera mobilis JLW8]
          Length = 346

 Score =  398 bits (1022), Expect = e-109,   Method: Composition-based stats.
 Identities = 197/334 (58%), Positives = 255/334 (76%), Gaps = 2/334 (0%)

Query: 1   MMDREGLLSRNV--SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M++ + L++ +V   QEDA    LRP+ L+E+ GQ +A + L++FI AA+ R+EALDHVL
Sbjct: 1   MIETDRLIAPDVVSPQEDALERALRPKVLDEYIGQEKARAQLEIFINAARGRSEALDHVL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA ++A+E+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS
Sbjct: 61  LFGPPGLGKTTLAHIIAKEMGVNMRQTSGPVLERAGDLAALLTNLEPNDVLFIDEIHRLS 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            +VEEILYPAMED++LD+M+GEGP+ARSV+++L  FTL+ ATTR G+LTNPL+DRFGI  
Sbjct: 121 PVVEEILYPAMEDYRLDIMIGEGPAARSVRLDLPPFTLVGATTRAGMLTNPLRDRFGIVS 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           RL FY  E+L  IVQR A L  + + D  A EIA RSRGTPRIA RLLRRVRD+A+V   
Sbjct: 181 RLEFYTSEELGRIVQRSAGLLDVEMVDSGALEIARRSRGTPRIANRLLRRVRDYAQVKAD 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             +   IADAAL  L +DK+GFD +D + L  +   FGGGPVG++ ++A + E RD IED
Sbjct: 241 GKVNANIADAALRMLDVDKLGFDVMDRKLLLAVLEKFGGGPVGLDNLAAAIGEERDTIED 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++EPY+IQQGF+ RTPRGR+    ++QH G+ +P
Sbjct: 301 VLEPYLIQQGFLMRTPRGRVATSQSYQHFGLPVP 334


>gi|163758800|ref|ZP_02165887.1| Holliday junction DNA helicase RuvB [Hoeflea phototrophica DFL-43]
 gi|162284090|gb|EDQ34374.1| Holliday junction DNA helicase RuvB [Hoeflea phototrophica DFL-43]
          Length = 345

 Score =  395 bits (1015), Expect = e-108,   Method: Composition-based stats.
 Identities = 251/333 (75%), Positives = 295/333 (88%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D + L+S +   ED D S LRP++L+EFTGQ EA +NLKVFIEAAK RAEALDHVLFV
Sbjct: 1   MNDPDRLISPDKRGEDVD-STLRPQSLDEFTGQAEARANLKVFIEAAKGRAEALDHVLFV 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++A+ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL+  
Sbjct: 60  GPPGLGKTTLAQIMAKELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLNPA 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILYPAMEDFQLDL++GEGP+ARSVKI+LSRFTL+AATTR+GLLT PL+DRFGIP+RL
Sbjct: 120 VEEILYPAMEDFQLDLIIGEGPAARSVKIDLSRFTLVAATTRLGLLTTPLRDRFGIPVRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY +E+L+ IV+RGA++ GL +TD+ A EIA R+RGTPRIAGRLLRRVRDFAEVA A+ 
Sbjct: 180 QFYTVEELELIVRRGARIMGLGMTDDGALEIARRARGTPRIAGRLLRRVRDFAEVAKAEA 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +T++IAD AL RL++D +G DQLD RYL MIARNFGGGPVGIETI+AGLSEPRDAIED+I
Sbjct: 240 VTQKIADEALTRLSVDSIGLDQLDRRYLDMIARNFGGGPVGIETIAAGLSEPRDAIEDII 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY+IQQGF+QRTPRGR++   AW H+G++ P 
Sbjct: 300 EPYLIQQGFLQRTPRGRVMTARAWGHIGLNPPK 332


>gi|91776696|ref|YP_546452.1| Holliday junction DNA helicase B [Methylobacillus flagellatus KT]
 gi|122985393|sp|Q1GYS6|RUVB_METFK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|91710683|gb|ABE50611.1| Holliday junction DNA helicase subunit RuvB [Methylobacillus
           flagellatus KT]
          Length = 345

 Score =  395 bits (1014), Expect = e-108,   Method: Composition-based stats.
 Identities = 195/336 (58%), Positives = 255/336 (75%), Gaps = 2/336 (0%)

Query: 1   MMDREGLL--SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M++ + L+  S   +QE+A    LRP+ L+E+ GQ +A   L++FI AA+ R+EALDHVL
Sbjct: 1   MIETDRLIAPSTQGTQEEALECALRPKVLDEYVGQEKARGQLEIFINAARGRSEALDHVL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA ++A+E+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS
Sbjct: 61  LFGPPGLGKTTLAHIIAKEMGVNMRQTSGPVLERAGDLAALLTNLEPNDVLFIDEIHRLS 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            +VEEILYPAMED++LD+M+GEGP+ARSV+++L  FTL+ ATTR G+LTNPL+DRFGI  
Sbjct: 121 PVVEEILYPAMEDYRLDIMIGEGPAARSVRLDLPPFTLVGATTRAGMLTNPLRDRFGIVS 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           RL FY  ++L  IV R A L  +A+  E A EIA RSRGTPRIA RLLRRVRD+A+V   
Sbjct: 181 RLEFYTADELARIVHRSAGLLEVAIQQEGALEIARRSRGTPRIANRLLRRVRDYAQVKSD 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             ++ +IADAAL  L +DK+GFD +D + L  +   F GGPVG++ ++A + E RD IED
Sbjct: 241 GVVSADIADAALKMLDVDKLGFDVMDRKLLLAVLEKFDGGPVGLDNLAAAIGEERDTIED 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           ++EPY+IQQG++ RTPRGR+    A+QH G+ IP +
Sbjct: 301 VLEPYLIQQGYLMRTPRGRIATQQAYQHFGLAIPGK 336


>gi|83647601|ref|YP_436036.1| Holliday junction DNA helicase RuvB [Hahella chejuensis KCTC 2396]
 gi|97190097|sp|Q2SCL3|RUVB_HAHCH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|83635644|gb|ABC31611.1| Holliday junction DNA helicase RuvB [Hahella chejuensis KCTC 2396]
          Length = 334

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 191/334 (57%), Positives = 250/334 (74%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + ++S N + QED+    +RP+ LE++ GQ +    +++FI AA+ R EALDH L 
Sbjct: 1   MIEADRIISPNATLQEDSQDRAIRPKRLEDYVGQPQVREQMEIFINAARGRQEALDHTLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A E+ V+ ++TSGPV+ KAGDLAALLTNLE +DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIIANEMDVSIKTTSGPVLEKAGDLAALLTNLEPKDVLFIDEIHRLSA 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ ATTR GLLT+PL+DRFGI  R
Sbjct: 121 AVEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGLLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY +EDL+ IV R A L G+++ D  A EIA RSRGTPRIA RLLRRVRD+AEV    
Sbjct: 181 LEFYSVEDLRHIVARSASLLGVSIDDGGAHEIARRSRGTPRIANRLLRRVRDYAEVKADG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT E+AD AL  L +D  GFD +D R L  +   F GGPVG+E+++A + E +  IED+
Sbjct: 241 AITNEVADKALNMLNVDLHGFDHMDRRLLLAVMEKFDGGPVGVESLAAAIGEEKGTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +EPY+IQQGF+ RTPRGR+    A+ H G+ +P 
Sbjct: 301 VEPYLIQQGFLMRTPRGRVATQAAYNHFGLTMPE 334


>gi|332531312|ref|ZP_08407223.1| Holliday junction DNA helicase RuvB [Hylemonella gracilis ATCC
           19624]
 gi|332039226|gb|EGI75641.1| Holliday junction DNA helicase RuvB [Hylemonella gracilis ATCC
           19624]
          Length = 358

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 189/325 (58%), Positives = 240/325 (73%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           +    +E+     LRP+ L+E+ GQ++    L++FI AA+ R EALDHVL  GPPGLGKT
Sbjct: 18  ASASPKEEVIERALRPKLLDEYVGQLKVREQLEIFIGAARKRGEALDHVLLFGPPGLGKT 77

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           TL+ ++A+ELGVN R TSGPV+ K  DLAALLTNLE  DVLFIDEIHRLS +VEEILYPA
Sbjct: 78  TLSHIIAQELGVNLRQTSGPVLEKPKDLAALLTNLEKNDVLFIDEIHRLSPVVEEILYPA 137

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +ED+Q+D+M+GEGP+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  E+L
Sbjct: 138 LEDYQIDIMIGEGPAARSIKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTAEEL 197

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             IV R AKL    + D  A EIA RSRGTPRIA RLLRRVRD+A+V  A  IT+E+A  
Sbjct: 198 TRIVTRSAKLLNAPMDDAGASEIARRSRGTPRIANRLLRRVRDYADVKGAGHITQEMAQK 257

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL+ L +D  GFD +D + L  +   F GGPVG++ I+A + E    IED+IEPY+IQQG
Sbjct: 258 ALVMLDVDPQGFDVMDRKLLEAVIHRFDGGPVGLDNIAASIGEEAGTIEDVIEPYLIQQG 317

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIPH 333
           F+QRTPRGR+    A++HLG+  P 
Sbjct: 318 FLQRTPRGRVATLAAYRHLGVAPPQ 342


>gi|222055416|ref|YP_002537778.1| Holliday junction DNA helicase RuvB [Geobacter sp. FRC-32]
 gi|254767428|sp|B9LZC4|RUVB_GEOSF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|221564705|gb|ACM20677.1| Holliday junction DNA helicase RuvB [Geobacter sp. FRC-32]
          Length = 339

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 189/328 (57%), Positives = 247/328 (75%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
             ++ +++ +D   + LRP++L+++ GQ +A  NL+VFIEAA+ R EALDHVL  GPPGL
Sbjct: 3   RTITPDMTDDDLLEATLRPKSLDDYVGQEKAKGNLRVFIEAARGRGEALDHVLLYGPPGL 62

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLA ++A E+GVN +STSGPVI + GDLAA+LTNLE  DVLFIDEIHRLS +VEEIL
Sbjct: 63  GKTTLANIIACEMGVNIKSTSGPVIERPGDLAAILTNLETHDVLFIDEIHRLSHVVEEIL 122

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           YPAMEDFQLD+++G+GPSAR++K++L +FTL+ ATTR GLL++PL+DRFG+  RL FY I
Sbjct: 123 YPAMEDFQLDIIIGQGPSARTIKLDLPKFTLVGATTRAGLLSSPLRDRFGVISRLEFYTI 182

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           E+L  I+ R A++ G+ +  E A E+A RSRGTPRIA RLLRRVRDFA+V     IT  +
Sbjct: 183 EELAFIITRSARILGMEIKPEGATELARRSRGTPRIANRLLRRVRDFAQVKADGVITLNV 242

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
              AL  L ID MGFD +D   L  I   FGGGPVG++TI+A +SE  D IED+ EP++I
Sbjct: 243 VQDALALLEIDHMGFDYMDRMILLTIIDKFGGGPVGLDTIAAAISEESDTIEDVYEPFLI 302

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           Q GF+ RTPRGR+    A++H G  +P 
Sbjct: 303 QNGFLNRTPRGRVATRAAYEHFGRIVPE 330


>gi|110635505|ref|YP_675713.1| Holliday junction DNA helicase B [Mesorhizobium sp. BNC1]
 gi|122965617|sp|Q11DH7|RUVB_MESSB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|110286489|gb|ABG64548.1| Holliday junction DNA helicase subunit RuvB [Chelativorans sp.
           BNC1]
          Length = 345

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 238/333 (71%), Positives = 287/333 (86%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M + + ++S     ED D + +RP++L+EF GQ  A +NLKVFIEAA++R EALDHVLFV
Sbjct: 1   MSEPDRIVSAVQRGEDID-TTMRPQSLDEFVGQKTARANLKVFIEAARSRGEALDHVLFV 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++ARELGVNFRSTSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRL+  
Sbjct: 60  GPPGLGKTTLAQIMARELGVNFRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLNPA 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILYPAMED+QLDL++GEGP+ARSVKI+L++FTL+AATTR+GLLT PL+DRFGIPIRL
Sbjct: 120 VEEILYPAMEDYQLDLIIGEGPAARSVKIDLAKFTLVAATTRLGLLTTPLRDRFGIPIRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY +++L+ IV RGA++ G+ + ++ A EIA R+RGTPRIAGRLLRRVRDFA VA A+ 
Sbjct: 180 EFYTVDELQAIVTRGARIMGMPLAEDGAEEIARRARGTPRIAGRLLRRVRDFAYVAGAEN 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +TR+IADAAL RL +D +G DQLD RYL MI  NFGGGPVGIETI+A LSEPRDAIED+I
Sbjct: 240 VTRQIADAALSRLEVDALGLDQLDRRYLHMIVENFGGGPVGIETIAAALSEPRDAIEDII 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY+IQQGFIQRTPRGR+L   AW+HLG++ P 
Sbjct: 300 EPYLIQQGFIQRTPRGRVLAAKAWRHLGLNPPK 332


>gi|150397835|ref|YP_001328302.1| Holliday junction DNA helicase RuvB [Sinorhizobium medicae WSM419]
 gi|166231558|sp|A6UCT7|RUVB_SINMW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|150029350|gb|ABR61467.1| Holliday junction DNA helicase RuvB [Sinorhizobium medicae WSM419]
          Length = 346

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 252/333 (75%), Positives = 294/333 (88%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M +   L++     ED D + LRP+TL+EFTGQ EA +NLK+FIEAA+ R EALDHVLFV
Sbjct: 1   MSEAARLIAPEKRGEDVD-ATLRPQTLDEFTGQAEARANLKIFIEAARNRGEALDHVLFV 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++A+ELGVNFRSTSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRL+  
Sbjct: 60  GPPGLGKTTLAQIMAKELGVNFRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLNPA 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILYPAMEDFQLDL++GEGPSARSVKI+L++FTL+AATTR+GLLT PL+DRFGIP+RL
Sbjct: 120 VEEILYPAMEDFQLDLIIGEGPSARSVKIDLAKFTLVAATTRLGLLTTPLRDRFGIPVRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           NFY +E+L+ IV+RGA+L GL +TDE A EIA R+RGTPRIAGRLLRRVRDFAEVA A+ 
Sbjct: 180 NFYTVEELELIVRRGARLMGLGMTDEGAREIARRARGTPRIAGRLLRRVRDFAEVARAEA 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +TR+IAD AL RL +D MG DQLD RYLTMIA+NFGGGPVGIETI+AGLSEPRDAIED+I
Sbjct: 240 VTRQIADEALTRLLVDSMGLDQLDRRYLTMIAQNFGGGPVGIETIAAGLSEPRDAIEDII 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY+IQQGFIQRTPRGR+L   AW+HLG++ P 
Sbjct: 300 EPYLIQQGFIQRTPRGRVLTANAWKHLGLNPPK 332


>gi|254000105|ref|YP_003052168.1| Holliday junction DNA helicase RuvB [Methylovorus sp. SIP3-4]
 gi|313202064|ref|YP_004040722.1| holliday junction DNA helicase ruvb [Methylovorus sp. MP688]
 gi|253986784|gb|ACT51641.1| Holliday junction DNA helicase RuvB [Methylovorus sp. SIP3-4]
 gi|312441380|gb|ADQ85486.1| Holliday junction DNA helicase RuvB [Methylovorus sp. MP688]
          Length = 345

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 194/334 (58%), Positives = 252/334 (75%), Gaps = 2/334 (0%)

Query: 1   MMDREGLLSRNV--SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M++ + L++      +E+A    LRP+ L+E+ GQ +A   L++FI AA+ R+EALDHVL
Sbjct: 1   MIETDRLIAAEPLGREEEALERALRPKVLDEYVGQEKARGQLEIFINAARGRSEALDHVL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA ++ARE+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS
Sbjct: 61  LFGPPGLGKTTLAHIIAREMGVNMRQTSGPVLERAGDLAALLTNLEPNDVLFIDEIHRLS 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            +VEEILYPAMED++LD+M+GEGP+ARSV+++L  FTL+ ATTR G+LTNPL+DRFGI  
Sbjct: 121 PVVEEILYPAMEDYRLDIMIGEGPAARSVRLDLPPFTLVGATTRAGMLTNPLRDRFGIVS 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           RL FY  E+L  IV R A L  +++ +  A EIA RSRGTPRIA RLLRRVRD+A+V   
Sbjct: 181 RLEFYTSEELARIVHRSATLLDVSMQEAGALEIAKRSRGTPRIANRLLRRVRDYAQVKAD 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             +T  IADAAL  L +DK+GFD +D + L  +   FGGGPVG++ ++A + E RD IED
Sbjct: 241 GIVTSAIADAALQMLDVDKLGFDVMDRKLLLAVLEKFGGGPVGLDNLAAAIGEERDTIED 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++EPY+IQQG++ RTPRGR+    A+QH G+  P
Sbjct: 301 VLEPYLIQQGYLMRTPRGRIATQQAYQHFGLPAP 334


>gi|332716452|ref|YP_004443918.1| Holliday junction DNA helicase RuvB [Agrobacterium sp. H13-3]
 gi|325063137|gb|ADY66827.1| Holliday junction DNA helicase RuvB [Agrobacterium sp. H13-3]
          Length = 349

 Score =  392 bits (1006), Expect = e-107,   Method: Composition-based stats.
 Identities = 252/333 (75%), Positives = 295/333 (88%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D + L+S +   ED D + +RP++L++FTGQ EA +NLKVFIEAAK R EALDHVLFV
Sbjct: 4   MSDADRLISADKRGEDID-TTMRPQSLDDFTGQAEARANLKVFIEAAKNRGEALDHVLFV 62

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++A+ELGVNF+STSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRL+  
Sbjct: 63  GPPGLGKTTLAQIMAKELGVNFKSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLNPA 122

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILYPAMEDFQLDL++GEGP+ARSVKI+LS+FTL+AATTR+GLLT PL+DRFGIP+RL
Sbjct: 123 VEEILYPAMEDFQLDLIIGEGPAARSVKIDLSKFTLVAATTRLGLLTTPLRDRFGIPVRL 182

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY +++L+ IV+RGA+L GL +TD+ A EIA R+RGTPRIAGRLLRRVRDFAEVA A+ 
Sbjct: 183 AFYTVDELELIVRRGARLMGLNMTDDGAREIARRARGTPRIAGRLLRRVRDFAEVARAEA 242

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +TREIAD AL RL +DKMG DQLD+RYLTMIA NFGGGPVGIETI+AGLSEPRDAIED+I
Sbjct: 243 VTREIADEALTRLLVDKMGLDQLDMRYLTMIAVNFGGGPVGIETIAAGLSEPRDAIEDII 302

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPYMIQQGFIQRTPRGR+L   AW+HLG+  P 
Sbjct: 303 EPYMIQQGFIQRTPRGRVLTGTAWKHLGMQPPK 335


>gi|218905615|ref|YP_002453449.1| Holliday junction DNA helicase RuvA [Bacillus cereus AH820]
 gi|218536299|gb|ACK88697.1| Holliday junction DNA helicase RuvA [Bacillus cereus AH820]
          Length = 541

 Score =  391 bits (1005), Expect = e-107,   Method: Composition-based stats.
 Identities = 189/334 (56%), Positives = 248/334 (74%), Gaps = 2/334 (0%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           +MD E LLS   + EDAD+   LRP+TL ++ GQ +A  NL+VFIEAAK R E LDHVL 
Sbjct: 208 IMD-ERLLSGESAYEDADLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLL 266

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT+L+  DVLFIDEIHRL  
Sbjct: 267 YGPPGLGKTTLANIIANEMGVNVRTTSGPAIERPGDLAAVLTSLQPGDVLFIDEIHRLHR 326

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            +EE+LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTR G L+ PL+DRFG+  R
Sbjct: 327 SIEEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSR 386

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y ++ L  IV+R A++  + +   AA EIA R+RGTPRIA RLLRRVRDFA+V    
Sbjct: 387 LEYYTVDQLSAIVERTAEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRGNG 446

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           T+T EI   AL  L +DK+G D +D + L  I   F GGPVG+ET+SA + E    IED+
Sbjct: 447 TVTMEITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSATIGEESHTIEDV 506

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            EPY++Q GF+QRTPRGR++ P+A++H G+++P 
Sbjct: 507 YEPYLLQIGFLQRTPRGRIVTPLAYEHFGMEMPK 540


>gi|116253729|ref|YP_769567.1| Holliday junction DNA helicase RuvB [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|241206205|ref|YP_002977301.1| Holliday junction DNA helicase RuvB [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|123384541|sp|Q1MC52|RUVB_RHIL3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|115258377|emb|CAK09480.1| putative Holliday junction DNA helicase RuvB [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|240860095|gb|ACS57762.1| Holliday junction DNA helicase RuvB [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 346

 Score =  391 bits (1005), Expect = e-107,   Method: Composition-based stats.
 Identities = 254/333 (76%), Positives = 293/333 (87%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M +   L+S     ED DI+ LRP++L+EFTGQ EA +NLKVFIEAAK R EALDHVLFV
Sbjct: 1   MSEPARLISPEKRGEDLDIT-LRPQSLDEFTGQAEARANLKVFIEAAKNRGEALDHVLFV 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++A+ELGVNFRSTSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRL+  
Sbjct: 60  GPPGLGKTTLAQIMAKELGVNFRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLNPA 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILYPAMEDFQLDL++GEGP+ARSVKI+LS+FTL+AATTR+GLLT PL+DRFGIP+RL
Sbjct: 120 VEEILYPAMEDFQLDLIIGEGPAARSVKIDLSKFTLVAATTRLGLLTTPLRDRFGIPVRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           +FY +E+L+ IV+RGA+L  L +T+E A EIA R+RGTPRIAGRLLRRVRDFAEVA A+ 
Sbjct: 180 SFYTVEELELIVRRGARLMNLPITEEGAREIARRARGTPRIAGRLLRRVRDFAEVARAEA 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +TREIAD AL RL +D +GFDQLD RYL MIA NFGGGPVGIETI+AGLSEPRDAIED+I
Sbjct: 240 VTREIADEALTRLLVDNVGFDQLDKRYLNMIAVNFGGGPVGIETIAAGLSEPRDAIEDII 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPYMIQQGFIQRTPRGR+L  IAW+HLG+  P 
Sbjct: 300 EPYMIQQGFIQRTPRGRVLTAIAWKHLGMQPPK 332


>gi|15966502|ref|NP_386855.1| Holliday junction DNA helicase B [Sinorhizobium meliloti 1021]
 gi|307300461|ref|ZP_07580241.1| Holliday junction DNA helicase RuvB [Sinorhizobium meliloti BL225C]
 gi|307318326|ref|ZP_07597761.1| Holliday junction DNA helicase RuvB [Sinorhizobium meliloti AK83]
 gi|20140125|sp|Q92M92|RUVB_RHIME RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|15075773|emb|CAC47328.1| Probable holliday junction DNA helicase [Sinorhizobium meliloti
           1021]
 gi|306896008|gb|EFN26759.1| Holliday junction DNA helicase RuvB [Sinorhizobium meliloti AK83]
 gi|306904627|gb|EFN35211.1| Holliday junction DNA helicase RuvB [Sinorhizobium meliloti BL225C]
          Length = 346

 Score =  391 bits (1005), Expect = e-107,   Method: Composition-based stats.
 Identities = 249/333 (74%), Positives = 293/333 (87%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M +   L++     ED D + +RP+TL+EFTGQ EA +NLK+FIEAA+ R EALDHVLFV
Sbjct: 1   MSEAARLIAPEKRGEDLD-ATMRPQTLDEFTGQAEARANLKIFIEAARNRGEALDHVLFV 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++A+ELGVNFRSTSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRL+  
Sbjct: 60  GPPGLGKTTLAQIMAKELGVNFRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLNPA 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILYPAMEDFQLDL++GEGP+ARSVKI+L++FTL+AATTR+GLLT PL+DRFGIP+RL
Sbjct: 120 VEEILYPAMEDFQLDLIIGEGPAARSVKIDLAKFTLVAATTRLGLLTTPLRDRFGIPVRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           NFY +E+L+ IV+RGA+L GL +TDE A EIA R+RGTPRIAGRLLRRVRDFAEVA A+ 
Sbjct: 180 NFYTVEELELIVRRGARLMGLGMTDEGAREIARRARGTPRIAGRLLRRVRDFAEVARAEA 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +T +IAD AL RL +D MG DQLD RYLTMIA+NFGGGPVGIETI+AGLSEPRDAIED+I
Sbjct: 240 VTLKIADEALTRLLVDSMGLDQLDRRYLTMIAQNFGGGPVGIETIAAGLSEPRDAIEDII 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY+IQQGFIQRTPRGR+L   AW+HLG++ P 
Sbjct: 300 EPYLIQQGFIQRTPRGRVLTANAWKHLGLNPPR 332


>gi|209550797|ref|YP_002282714.1| Holliday junction DNA helicase RuvB [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|226698781|sp|B5ZP80|RUVB_RHILW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|209536553|gb|ACI56488.1| Holliday junction DNA helicase RuvB [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 346

 Score =  391 bits (1004), Expect = e-107,   Method: Composition-based stats.
 Identities = 254/333 (76%), Positives = 293/333 (87%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M +   L+S     ED DI+ LRP++L+EFTGQ EA +NLKVFIEAAK R EALDHVLFV
Sbjct: 1   MSEPARLISPEKRGEDLDIT-LRPQSLDEFTGQAEARANLKVFIEAAKNRGEALDHVLFV 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++A+ELGVNFRSTSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRL+  
Sbjct: 60  GPPGLGKTTLAQIMAKELGVNFRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLNPA 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILYPAMEDFQLDL++GEGP+ARSVKI+LS+FTL+AATTR+GLLT PL+DRFGIP+RL
Sbjct: 120 VEEILYPAMEDFQLDLIIGEGPAARSVKIDLSKFTLVAATTRLGLLTTPLRDRFGIPVRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           +FY +E+L+ IV+RGA+L  L +T+E A EIA R+RGTPRIAGRLLRRVRDFAEVA A+ 
Sbjct: 180 SFYTVEELELIVRRGARLMNLPITEEGAREIARRARGTPRIAGRLLRRVRDFAEVARAEA 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +TREIAD AL RL +D +GFDQLD RYL MIA NFGGGPVGIETI+AGLSEPRDAIED+I
Sbjct: 240 VTREIADEALTRLLVDNVGFDQLDKRYLNMIAVNFGGGPVGIETIAAGLSEPRDAIEDII 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPYMIQQGFIQRTPRGR+L  IAW+HLG+  P 
Sbjct: 300 EPYMIQQGFIQRTPRGRVLTAIAWKHLGMQPPK 332


>gi|240144038|ref|ZP_04742639.1| holliday junction DNA helicase RuvB [Roseburia intestinalis L1-82]
 gi|257203964|gb|EEV02249.1| holliday junction DNA helicase RuvB [Roseburia intestinalis L1-82]
          Length = 330

 Score =  391 bits (1004), Expect = e-107,   Method: Composition-based stats.
 Identities = 174/328 (53%), Positives = 245/328 (74%), Gaps = 1/328 (0%)

Query: 4   REGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
            + ++S  V +ED  I   LRP+TL+++ GQ +A  NLKV+IEAAK R EALDHVLF GP
Sbjct: 2   EKRVISTQVQEEDIKIEKSLRPQTLDDYIGQQKAKENLKVYIEAAKQRGEALDHVLFYGP 61

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++A E+G + + TSGP I K G++AA+L+NL++ DVLF+DEIHRL+  VE
Sbjct: 62  PGLGKTTLAGIIANEMGTHLKVTSGPAIGKPGEMAAILSNLQEGDVLFVDEIHRLNRQVE 121

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMED+ +D+M+G+G +AR+++++L +FTL+ ATTR GLL+ PL+DRFG+   L F
Sbjct: 122 EVLYPAMEDYVIDIMIGKGATARAIRLDLPKFTLVGATTRAGLLSAPLRDRFGVVHHLEF 181

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y +E+LKTI+   AK  G+ + ++ A E+A RSRGTPR+A RLL+RVRDFAEV +   I+
Sbjct: 182 YTVEELKTIILHSAKTLGVEIDEKGAFELARRSRGTPRLANRLLKRVRDFAEVKYDGKIS 241

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           +E+A  AL  L +DKMG DQ D   L ++   F GGPVG++T++A + E    IED+ EP
Sbjct: 242 KEVAAFALDLLEVDKMGLDQNDRNILKIMIEKFSGGPVGLDTLAAAIGEDSGTIEDVYEP 301

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           Y+++ GFI RTP+GR++   A+QH G+ 
Sbjct: 302 YLVKNGFINRTPKGRVVTDFAYQHFGLT 329


>gi|146312075|ref|YP_001177149.1| Holliday junction DNA helicase RuvB [Enterobacter sp. 638]
 gi|167012671|sp|A4WBL8|RUVB_ENT38 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|145318951|gb|ABP61098.1| Holliday junction DNA helicase subunit RuvB [Enterobacter sp. 638]
          Length = 336

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 200/334 (59%), Positives = 253/334 (75%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S   +Q ED     +RP+ LEE+ GQ +  S +++FI+AAK R EALDH+L 
Sbjct: 1   MIEADRLISAASNQPEDVVDRAIRPKLLEEYIGQPQVRSQMEIFIQAAKLRGEALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IV R A+  GL ++DE A E+A RSRGTPRIA RLLRRVRDFAEV H  
Sbjct: 181 LEFYQVPDLQYIVGRSARFMGLELSDEGAFEVAKRSRGTPRIANRLLRRVRDFAEVKHDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           TI+ ++A  AL  L +D  GFD +D + L  I   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 TISLDVAAQALDMLNVDAEGFDYMDRKLLLAILDKFFGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +EPY+IQQGF+QRTPRGR+    AW H GI  P 
Sbjct: 301 LEPYLIQQGFLQRTPRGRMATVRAWNHFGITPPE 334


>gi|170769448|ref|ZP_02903901.1| Holliday junction DNA helicase RuvB [Escherichia albertii TW07627]
 gi|170121772|gb|EDS90703.1| Holliday junction DNA helicase RuvB [Escherichia albertii TW07627]
          Length = 336

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 195/334 (58%), Positives = 252/334 (75%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S   +  ED     +RP+ LEE+ GQ +  S +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IV R A+  GL ++D+ A E+A R+RGTPRIA RLLRRVRDFAEV H  
Sbjct: 181 LEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           TI+ ++A  AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 TISADVAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +EPY+IQQGF+QRTPRGR+    AW H GI  P 
Sbjct: 301 LEPYLIQQGFLQRTPRGRMATARAWNHFGITPPE 334


>gi|218462461|ref|ZP_03502552.1| Holliday junction DNA helicase RuvB [Rhizobium etli Kim 5]
          Length = 346

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 252/333 (75%), Positives = 293/333 (87%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M +   L+S     ED D++ LRP++L+EFTGQ EA +NLK+FIEAAK R EALDHVLFV
Sbjct: 1   MSEPARLISPEKRGEDLDVT-LRPQSLDEFTGQAEARANLKIFIEAAKNRGEALDHVLFV 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++A+ELGVNFRSTSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRL+  
Sbjct: 60  GPPGLGKTTLAQIMAKELGVNFRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLNPA 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILYPAMEDFQLDL++GEGP+ARSVKI+LS+FTL+AATTR+GLLT PL+DRFGIP+RL
Sbjct: 120 VEEILYPAMEDFQLDLIIGEGPAARSVKIDLSKFTLVAATTRLGLLTTPLRDRFGIPVRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           +FY +E+L+ IV+RGA+L  L +T+E A EIA R+RGTPRIAGRLLRRVRDFAEVA A+ 
Sbjct: 180 SFYTVEELELIVRRGARLMNLPITEEGAREIARRARGTPRIAGRLLRRVRDFAEVARAEA 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +TREIAD AL RL +D +GFDQLD RYL MIA NFGGGPVGIETI+AGLSEPRDAIED+I
Sbjct: 240 VTREIADEALTRLLVDNVGFDQLDKRYLNMIAVNFGGGPVGIETIAAGLSEPRDAIEDII 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPYMIQQGFIQRTPRGR+L  IAW+HLG+  P 
Sbjct: 300 EPYMIQQGFIQRTPRGRVLTAIAWKHLGMQPPK 332


>gi|86359073|ref|YP_470965.1| Holliday junction DNA helicase B [Rhizobium etli CFN 42]
 gi|20140295|sp|Q9L9C3|RUVB_RHIET RecName: Full=Holliday junction DNA helicase ruvB
 gi|123751943|sp|Q2K4J8|RUVB_RHIEC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|7110155|gb|AAF36814.1|AF175525_2 RuvB [Rhizobium etli]
 gi|86283175|gb|ABC92238.1| holliday junction DNA helicase protein [Rhizobium etli CFN 42]
          Length = 346

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 253/333 (75%), Positives = 292/333 (87%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M +   L+S     ED DI+ LRP++L+EFTGQ EA +NLKVFIEAAK R EALDHVLFV
Sbjct: 1   MSEPARLISPEKRGEDLDIT-LRPQSLDEFTGQAEARANLKVFIEAAKNRGEALDHVLFV 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++A+ELGVNFRSTSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRL+  
Sbjct: 60  GPPGLGKTTLAQIMAKELGVNFRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLNPA 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILYPAMED+QLDL++GEGP+ARSVKI+LS+FTL+AATTR+GLLT PL+DRFGIP+RL
Sbjct: 120 VEEILYPAMEDYQLDLIIGEGPAARSVKIDLSKFTLVAATTRLGLLTTPLRDRFGIPVRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY +E+L+ IV+RGA+L  L +T+E A EIA R+RGTPRIAGRLLRRVRDFAEVA A+ 
Sbjct: 180 TFYTVEELELIVRRGARLMNLPMTEEGAREIARRARGTPRIAGRLLRRVRDFAEVARAEA 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +TREIAD AL RL +D +GFDQLD RYL MIA NFGGGPVGIETI+AGLSEPRDAIED+I
Sbjct: 240 VTREIADEALTRLLVDNVGFDQLDKRYLNMIAVNFGGGPVGIETIAAGLSEPRDAIEDII 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPYMIQQGFIQRTPRGR+L  IAW+HLG+  P 
Sbjct: 300 EPYMIQQGFIQRTPRGRVLTAIAWKHLGMQPPK 332


>gi|319781020|ref|YP_004140496.1| Holliday junction DNA helicase RuvB [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317166908|gb|ADV10446.1| Holliday junction DNA helicase RuvB [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 345

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 243/333 (72%), Positives = 285/333 (85%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M     L++     EDA    LRP+TL++F GQ  A +NLKVFIEAAK+R+EALDHVLFV
Sbjct: 1   MSLSPRLIAPEKRGEDA-EQTLRPQTLDDFVGQAAARANLKVFIEAAKSRSEALDHVLFV 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++ARELGVNFRSTSGPVIAKAGDLAALLTNLE+ DVLFIDEIHRLS  
Sbjct: 60  GPPGLGKTTLAQIMARELGVNFRSTSGPVIAKAGDLAALLTNLEEGDVLFIDEIHRLSPA 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILYPAMEDFQLDL++GEGP+ARSVKI+L+RFTL+AATTR+GLLTNPL+DRFGIP+RL
Sbjct: 120 VEEILYPAMEDFQLDLIIGEGPAARSVKIDLARFTLVAATTRLGLLTNPLRDRFGIPVRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           NFY +E+L+ IV+RGA++  + + ++ A EIA R+RGTPRIAGRLLRRVRDFA VA    
Sbjct: 180 NFYTVEELEQIVRRGARILQMPLGNDGALEIARRARGTPRIAGRLLRRVRDFASVAGDGH 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           + R+IAD AL RL +D +G D LD RYL+MIARNFGGGPVGIETI+AGLSEPRDAIED+I
Sbjct: 240 VDRKIADEALTRLEVDALGLDALDRRYLSMIARNFGGGPVGIETIAAGLSEPRDAIEDII 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY+IQQGFIQRTPRGR+L   AW+HLG+D P 
Sbjct: 300 EPYLIQQGFIQRTPRGRMLTANAWRHLGLDAPK 332


>gi|15891226|ref|NP_356898.1| Holliday junction DNA helicase B [Agrobacterium tumefaciens str.
           C58]
 gi|21759426|sp|Q8U9K6|RUVB_AGRT5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|15159589|gb|AAK89683.1| Holliday junction DNA helicase RuvB [Agrobacterium tumefaciens str.
           C58]
          Length = 346

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 251/333 (75%), Positives = 292/333 (87%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D + L++     ED D + LRP++L++FTGQ EA +NLKVFIEAAK R EALDHVLFV
Sbjct: 1   MSDADRLITPEKRGEDID-TTLRPQSLDDFTGQAEARANLKVFIEAAKNRGEALDHVLFV 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++A+ELGVNF+STSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRL+  
Sbjct: 60  GPPGLGKTTLAQIMAKELGVNFKSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLNPA 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILYPAMEDFQLDL++GEGP+ARSVKI+LS+FTL+AATTR+GLLT PL+DRFGIP+RL
Sbjct: 120 VEEILYPAMEDFQLDLIIGEGPAARSVKIDLSKFTLVAATTRLGLLTTPLRDRFGIPVRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY +++L+ IV+RGA+L GL +TD  A EIA R+RGTPRIAGRLLRRVRDFAEVA A+ 
Sbjct: 180 AFYTVDELELIVRRGARLMGLNMTDGGAREIARRARGTPRIAGRLLRRVRDFAEVARAEA 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +TREIAD AL RL +D MG DQLD+RYLTMIA NFGGGPVGIETI+AGLSEPRDAIED+I
Sbjct: 240 VTREIADEALTRLLVDNMGLDQLDMRYLTMIAVNFGGGPVGIETIAAGLSEPRDAIEDII 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPYMIQQGFIQRTPRGR+L   AW+HLG+  P 
Sbjct: 300 EPYMIQQGFIQRTPRGRILTATAWKHLGLQPPK 332


>gi|331673390|ref|ZP_08374158.1| holliday junction DNA helicase RuvB [Escherichia coli TA280]
 gi|331069588|gb|EGI40975.1| holliday junction DNA helicase RuvB [Escherichia coli TA280]
          Length = 336

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 196/334 (58%), Positives = 252/334 (75%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S   +  ED     +RP+ LEE+ GQ +  S +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IV R A+  GL ++D+ A E+A R+RGTPRIA RLLRRVRDFAEV H  
Sbjct: 181 LEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           TI+ +IA  AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 TISADIAAQALDMLNVDAEGFDYMDRKLLLTVIDKFFGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +EPY+IQQGF+QRTPRGR+    AW H GI  P 
Sbjct: 301 LEPYLIQQGFLQRTPRGRMATVRAWNHFGITPPE 334


>gi|291538855|emb|CBL11966.1| Holliday junction DNA helicase, RuvB subunit [Roseburia
           intestinalis XB6B4]
          Length = 330

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 175/328 (53%), Positives = 245/328 (74%), Gaps = 1/328 (0%)

Query: 4   REGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
            + ++S  V +ED  I   LRP+TL+++ GQ +A  NLKV+IEAAK R EALDHVLF GP
Sbjct: 2   EKRVISTQVQEEDIKIEKSLRPQTLDDYIGQQKAKENLKVYIEAAKQRGEALDHVLFYGP 61

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++A E+G + + TSGP I K G++AA+L+NL++ DVLF+DEIHRL+  VE
Sbjct: 62  PGLGKTTLAGIIANEMGTHLKVTSGPAIGKPGEMAAILSNLQEGDVLFVDEIHRLNRQVE 121

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMED+ +D+M+G+G +AR+++++L +FTL+ ATTR GLL+ PL+DRFG+   L F
Sbjct: 122 EVLYPAMEDYVIDIMIGKGATARAIRLDLPKFTLVGATTRAGLLSAPLRDRFGVVHHLEF 181

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y +E+LKTI+   AK  G+ + +E A E+A RSRGTPR+A RLL+RVRDFAEV +   I+
Sbjct: 182 YTVEELKTIILHSAKTLGVEIDEEGAFELARRSRGTPRLANRLLKRVRDFAEVKYDGKIS 241

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           +E+A  AL  L +DKMG DQ D   L ++   F GGPVG++T++A + E    IED+ EP
Sbjct: 242 KEVAAFALDLLEVDKMGLDQNDRNILKIMIEKFSGGPVGLDTLAAAIGEDSGTIEDVYEP 301

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           Y+++ GFI RTP+GR++   A+QH G+ 
Sbjct: 302 YLVKNGFINRTPKGRVVTDFAYQHFGLT 329


>gi|13473338|ref|NP_104905.1| Holliday junction DNA helicase RuvB [Mesorhizobium loti MAFF303099]
 gi|20140185|sp|Q98F76|RUVB_RHILO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|14024087|dbj|BAB50691.1| Holliday branch migration protein; RuvB [Mesorhizobium loti
           MAFF303099]
          Length = 345

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 243/333 (72%), Positives = 281/333 (84%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M     L++     EDAD   LRP+TL +F GQ    +NLKVFIEAAK R EALDHVLFV
Sbjct: 1   MSLSPRLIAPEKRGEDAD-QTLRPQTLADFVGQAAVRANLKVFIEAAKGRNEALDHVLFV 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++ARELGVNFRSTSGPVIAKAGDLAALLTNLE+ DVLFIDEIHRL+  
Sbjct: 60  GPPGLGKTTLAQIMARELGVNFRSTSGPVIAKAGDLAALLTNLEEGDVLFIDEIHRLNPA 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILYPAMEDFQLDL++GEGP+ARSVKI+L+RFTL+AATTR+GLLTNPL+DRFGIP+RL
Sbjct: 120 VEEILYPAMEDFQLDLIIGEGPAARSVKIDLARFTLVAATTRLGLLTNPLRDRFGIPVRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           NFY +E+L+ IV+RGA++  + + D+ A EIA R+RGTPRIAGRLLRRVRDFA VA    
Sbjct: 180 NFYTVEELEQIVRRGARILQMPLGDDGALEIARRARGTPRIAGRLLRRVRDFASVAGDGH 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           + R IAD AL RL +D +G D LD RYL+MIARNFGGGPVGIETI+AGLSEPRDAIED+I
Sbjct: 240 VDRLIADEALTRLEVDALGLDALDRRYLSMIARNFGGGPVGIETIAAGLSEPRDAIEDII 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY+IQQGFIQRTPRGR+L   AW+HLG+D P 
Sbjct: 300 EPYLIQQGFIQRTPRGRMLTANAWRHLGLDAPK 332


>gi|260467058|ref|ZP_05813238.1| Holliday junction DNA helicase RuvB [Mesorhizobium opportunistum
           WSM2075]
 gi|259029167|gb|EEW30463.1| Holliday junction DNA helicase RuvB [Mesorhizobium opportunistum
           WSM2075]
          Length = 345

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 242/333 (72%), Positives = 281/333 (84%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M     L++     EDA    LRP+TL++F GQ    +NLKVFIEAAK R EALDHVLFV
Sbjct: 1   MSLAPRLIAPEKRGEDA-EQTLRPQTLDDFVGQAAVRANLKVFIEAAKGRNEALDHVLFV 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++ARELGVNFRSTSGPVIAKAGDLAALLTNLE+ DVLFIDEIHRL+  
Sbjct: 60  GPPGLGKTTLAQIMARELGVNFRSTSGPVIAKAGDLAALLTNLEEGDVLFIDEIHRLNPA 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILYPAMEDFQLDL++GEGP+ARSVKI+L+RFTL+AATTR+GLLTNPL+DRFGIP+RL
Sbjct: 120 VEEILYPAMEDFQLDLIIGEGPAARSVKIDLARFTLVAATTRLGLLTNPLRDRFGIPVRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           NFY +E+L+ IV+RGA++  + + D+ A EIA R+RGTPRIAGRLLRRVRDFA VA    
Sbjct: 180 NFYTVEELEQIVRRGARILQMPLGDDGALEIARRARGTPRIAGRLLRRVRDFASVAGDGH 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           + R IAD AL RL +D +G D LD RYL+MIARNFGGGPVGIETI+AGLSEPRDAIED+I
Sbjct: 240 VDRLIADEALTRLEVDALGLDALDRRYLSMIARNFGGGPVGIETIAAGLSEPRDAIEDII 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY+IQQGFIQRTPRGR+L   AW+HLG+D P 
Sbjct: 300 EPYLIQQGFIQRTPRGRMLTGNAWRHLGLDAPK 332


>gi|297539681|ref|YP_003675450.1| Holliday junction DNA helicase RuvB [Methylotenera sp. 301]
 gi|297259028|gb|ADI30873.1| Holliday junction DNA helicase RuvB [Methylotenera sp. 301]
          Length = 344

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 194/335 (57%), Positives = 254/335 (75%), Gaps = 2/335 (0%)

Query: 1   MMDREGLLSRNV--SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M++ + L++ +    +E+A    LRP+ L+E+ GQ +A S L++FI AA+ R+EALDHVL
Sbjct: 1   MIETDRLIAPDAESPREEALERALRPKLLDEYVGQEKARSQLEIFINAARGRSEALDHVL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA ++A+E+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS
Sbjct: 61  LFGPPGLGKTTLAHIIAKEMGVNMRQTSGPVLERAGDLAALLTNLEPNDVLFIDEIHRLS 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            +VEEILYPAMED++LD+M+GEGP+ARSV+++L  FTLI ATTR G+LTNPL+DRFGI  
Sbjct: 121 PVVEEILYPAMEDYRLDIMIGEGPAARSVRLDLPPFTLIGATTRAGMLTNPLRDRFGIVS 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           RL FY  E+L  IV R A L  + + D  + EIA RSRGTPRIA RLLRRVRD+A+V   
Sbjct: 181 RLEFYTSEELARIVHRSAGLLEVEMADTGSLEIARRSRGTPRIANRLLRRVRDYAQVKAN 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             ++ EIADAAL  L +DK+GFD +D + L  +   FGGGPVG++ ++A + E RD IED
Sbjct: 241 GIVSSEIADAALKMLDVDKLGFDVMDRKLLLAVIEKFGGGPVGLDNLAAAIGEERDTIED 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           ++EPY+IQQG++ RTPRGR+    A+QH  + +P 
Sbjct: 301 VLEPYLIQQGYLMRTPRGRIATLQAYQHFELPMPK 335


>gi|190893295|ref|YP_001979837.1| holliday junction DNA helicase [Rhizobium etli CIAT 652]
 gi|238692541|sp|B3PYZ5|RUVB_RHIE6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|190698574|gb|ACE92659.1| holliday junction DNA helicase protein [Rhizobium etli CIAT 652]
          Length = 346

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 253/333 (75%), Positives = 293/333 (87%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M +   L+S     ED D++ LRP++L+EFTGQ EA +NLKVFIEAAK R EALDHVLFV
Sbjct: 1   MSEPARLISPEKRGEDLDMT-LRPQSLDEFTGQAEARANLKVFIEAAKNRGEALDHVLFV 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++A+ELGVNFRSTSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRL+  
Sbjct: 60  GPPGLGKTTLAQIMAKELGVNFRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLNPA 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILYPAMEDFQLDL++GEGP+ARSVKI+LS+FTL+AATTR+GLLT PL+DRFGIP+RL
Sbjct: 120 VEEILYPAMEDFQLDLIIGEGPAARSVKIDLSKFTLVAATTRLGLLTTPLRDRFGIPVRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           +FY +E+L+ IV+RGA+L  L +T+E A EIA R+RGTPRIAGRLLRRVRDFAEVA A+ 
Sbjct: 180 SFYTVEELELIVRRGARLMNLPMTEEGAREIARRARGTPRIAGRLLRRVRDFAEVARAEA 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +TREIAD AL RL +D +GFDQLD RYL MIA NFGGGPVGIETI+AGLSEPRDAIED+I
Sbjct: 240 VTREIADEALTRLLVDNVGFDQLDKRYLNMIAVNFGGGPVGIETIAAGLSEPRDAIEDII 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPYMIQQGFIQRTPRGR+L  IAW+HLG+  P 
Sbjct: 300 EPYMIQQGFIQRTPRGRVLTAIAWKHLGMQPPK 332


>gi|281178930|dbj|BAI55260.1| holliday junction helicase subunit RuvB [Escherichia coli SE15]
          Length = 336

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 196/334 (58%), Positives = 252/334 (75%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S   +  ED     +RP+ LEE+ GQ +  S +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IV R A+  GL ++D+ A E+A R+RGTPRIA RLLRRVRDFAEV H  
Sbjct: 181 LEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           TI+ +IA  AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +EPY+IQQGF+QRTPRGR+    AW H GI  P 
Sbjct: 301 LEPYLIQQGFLQRTPRGRMATTRAWNHFGITPPE 334


>gi|331657909|ref|ZP_08358871.1| holliday junction DNA helicase RuvB [Escherichia coli TA206]
 gi|315296551|gb|EFU55848.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 16-3]
 gi|331056157|gb|EGI28166.1| holliday junction DNA helicase RuvB [Escherichia coli TA206]
          Length = 336

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 196/334 (58%), Positives = 252/334 (75%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S   +  ED     +RP+ LEE+ GQ +  S +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IV R A+  GL ++D+ A E+A R+RGTPRIA RLLRRVRDFAEV H  
Sbjct: 181 LEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           TI+ +IA  AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +EPY+IQQGF+QRTPRGR+    AW H GI  P 
Sbjct: 301 LEPYLIQQGFLQRTPRGRMATTRAWNHFGITPPE 334


>gi|237731898|ref|ZP_04562379.1| holliday junction DNA helicase ruvB [Citrobacter sp. 30_2]
 gi|226907437|gb|EEH93355.1| holliday junction DNA helicase ruvB [Citrobacter sp. 30_2]
          Length = 336

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 197/334 (58%), Positives = 253/334 (75%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSR-NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S  + + ED     +RP+ LEE+ GQ +  S +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRLISAVSTTPEDLVDRAIRPKLLEEYIGQPQVRSQMEIFIQAAKLRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IV R A+  GL ++DE A E+A R+RGTPRIA RLLRRVRDFAEV H  
Sbjct: 181 LEFYQVADLQHIVGRSARFMGLEMSDEGALEVARRARGTPRIANRLLRRVRDFAEVKHDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           TI+ +IA  AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +EPY+IQQGF+QRTPRGR+    AW H GI  P 
Sbjct: 301 LEPYLIQQGFLQRTPRGRMATVRAWNHFGITPPQ 334


>gi|24113210|ref|NP_707720.1| Holliday junction DNA helicase RuvB [Shigella flexneri 2a str. 301]
 gi|30063271|ref|NP_837442.1| Holliday junction DNA helicase RuvB [Shigella flexneri 2a str.
           2457T]
 gi|110805804|ref|YP_689324.1| Holliday junction DNA helicase RuvB [Shigella flexneri 5 str. 8401]
 gi|44888468|sp|Q83KR5|RUVB_SHIFL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|122957400|sp|Q0T3U6|RUVB_SHIF8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|24052206|gb|AAN43427.1| Holliday junction helicase subunit A [Shigella flexneri 2a str.
           301]
 gi|30041523|gb|AAP17251.1| Holliday junction helicase subunit A [Shigella flexneri 2a str.
           2457T]
 gi|110615352|gb|ABF04019.1| Holliday junction helicase [Shigella flexneri 5 str. 8401]
 gi|281601275|gb|ADA74259.1| Holliday junction ATP-dependent DNA helicase ruvB [Shigella
           flexneri 2002017]
 gi|313650644|gb|EFS15046.1| holliday junction DNA helicase RuvB [Shigella flexneri 2a str.
           2457T]
 gi|332756760|gb|EGJ87107.1| holliday junction DNA helicase RuvB [Shigella flexneri 4343-70]
 gi|332757637|gb|EGJ87970.1| holliday junction DNA helicase RuvB [Shigella flexneri 2747-71]
 gi|332758048|gb|EGJ88374.1| holliday junction DNA helicase RuvB [Shigella flexneri K-671]
 gi|332766836|gb|EGJ97037.1| holliday junction DNA helicase RuvB [Shigella flexneri 2930-71]
 gi|333003564|gb|EGK23104.1| holliday junction DNA helicase RuvB [Shigella flexneri VA-6]
 gi|333004731|gb|EGK24253.1| holliday junction DNA helicase RuvB [Shigella flexneri K-218]
 gi|333018629|gb|EGK37923.1| holliday junction DNA helicase RuvB [Shigella flexneri K-304]
          Length = 336

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 196/334 (58%), Positives = 252/334 (75%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S   +  ED     +RP+ LEE+ GQ +  S +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IV R A+  GL ++D+ A E+A R+RGTPRIA RLLRRVRDFAEV H  
Sbjct: 181 LEFYQVPDLQYIVSRSARFMGLEMSDDGAQEVARRARGTPRIANRLLRRVRDFAEVKHDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           TI+ +IA  AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +EPY+IQQGF+QRTPRGR+    AW H GI  P 
Sbjct: 301 LEPYLIQQGFLQRTPRGRMATTRAWNHFGITPPE 334


>gi|187732707|ref|YP_001879637.1| Holliday junction DNA helicase RuvB [Shigella boydii CDC 3083-94]
 gi|238691714|sp|B2TWQ1|RUVB_SHIB3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|187429699|gb|ACD08973.1| Holliday junction DNA helicase RuvB [Shigella boydii CDC 3083-94]
          Length = 336

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 195/334 (58%), Positives = 252/334 (75%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S   +  ED     +RP+ LEE+ GQ +  S +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+++GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIIIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IV R A+  GL ++D+ A E+A R+RGTPRIA RLLRRVRDFAEV H  
Sbjct: 181 LEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           TI+ +IA  AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +EPY+IQQGF+QRTPRGR+    AW H GI  P 
Sbjct: 301 LEPYLIQQGFLQRTPRGRMATTRAWNHFGITPPE 334


>gi|26248126|ref|NP_754166.1| Holliday junction DNA helicase RuvB [Escherichia coli CFT073]
 gi|110641978|ref|YP_669708.1| Holliday junction DNA helicase RuvB [Escherichia coli 536]
 gi|170681518|ref|YP_001743384.1| Holliday junction DNA helicase RuvB [Escherichia coli SMS-3-5]
 gi|191173034|ref|ZP_03034568.1| Holliday junction DNA helicase RuvB [Escherichia coli F11]
 gi|215487073|ref|YP_002329504.1| Holliday junction DNA helicase RuvB [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218548579|ref|YP_002382370.1| Holliday junction DNA helicase RuvB [Escherichia fergusonii ATCC
           35469]
 gi|218699568|ref|YP_002407197.1| Holliday junction DNA helicase RuvB [Escherichia coli IAI39]
 gi|218705361|ref|YP_002412880.1| Holliday junction DNA helicase RuvB [Escherichia coli UMN026]
 gi|227885712|ref|ZP_04003517.1| Holliday junction DNA helicase B [Escherichia coli 83972]
 gi|293405355|ref|ZP_06649347.1| ruvB [Escherichia coli FVEC1412]
 gi|293410172|ref|ZP_06653748.1| Holliday junction DNA helicase RuvB [Escherichia coli B354]
 gi|298380997|ref|ZP_06990596.1| Holliday junction DNA helicase RuvB [Escherichia coli FVEC1302]
 gi|300899110|ref|ZP_07117393.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 198-1]
 gi|300935835|ref|ZP_07150793.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 21-1]
 gi|300982164|ref|ZP_07175899.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 200-1]
 gi|300994111|ref|ZP_07180694.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 45-1]
 gi|301018304|ref|ZP_07182813.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 69-1]
 gi|312967062|ref|ZP_07781280.1| holliday junction DNA helicase RuvB [Escherichia coli 2362-75]
 gi|331663356|ref|ZP_08364266.1| holliday junction DNA helicase RuvB [Escherichia coli TA143]
 gi|29336705|sp|Q8FGR3|RUVB_ECOL6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|122958286|sp|Q0TGX2|RUVB_ECOL5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|226725458|sp|B7NS58|RUVB_ECO7I RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|226725460|sp|B7NBL1|RUVB_ECOLU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|226725461|sp|B1LD11|RUVB_ECOSM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|226725462|sp|B7LPI4|RUVB_ESCF3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|254767425|sp|B7USN7|RUVB_ECO27 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|26108529|gb|AAN80731.1|AE016761_306 Holliday junction DNA helicase ruvB [Escherichia coli CFT073]
 gi|110343570|gb|ABG69807.1| holliday junction DNA helicase RuvB [Escherichia coli 536]
 gi|170519236|gb|ACB17414.1| Holliday junction DNA helicase RuvB [Escherichia coli SMS-3-5]
 gi|190906745|gb|EDV66350.1| Holliday junction DNA helicase RuvB [Escherichia coli F11]
 gi|215265145|emb|CAS09533.1| ATP-dependent DNA helicase RuvB, component of RuvABC resolvasome
           [Escherichia coli O127:H6 str. E2348/69]
 gi|218356120|emb|CAQ88737.1| ATP-dependent DNA helicase, component of RuvABC resolvasome
           [Escherichia fergusonii ATCC 35469]
 gi|218369554|emb|CAR17323.1| ATP-dependent DNA helicase, component of RuvABC resolvasome
           [Escherichia coli IAI39]
 gi|218432458|emb|CAR13351.1| ATP-dependent DNA helicase, component of RuvABC resolvasome
           [Escherichia coli UMN026]
 gi|227837285|gb|EEJ47751.1| Holliday junction DNA helicase B [Escherichia coli 83972]
 gi|284921780|emb|CBG34853.1| holliday junction ATP-dependent DNA helicase [Escherichia coli 042]
 gi|291427563|gb|EFF00590.1| ruvB [Escherichia coli FVEC1412]
 gi|291470640|gb|EFF13124.1| Holliday junction DNA helicase RuvB [Escherichia coli B354]
 gi|298278439|gb|EFI19953.1| Holliday junction DNA helicase RuvB [Escherichia coli FVEC1302]
 gi|300307320|gb|EFJ61840.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 200-1]
 gi|300357267|gb|EFJ73137.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 198-1]
 gi|300399740|gb|EFJ83278.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 69-1]
 gi|300406373|gb|EFJ89911.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 45-1]
 gi|300458947|gb|EFK22440.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 21-1]
 gi|307553879|gb|ADN46654.1| holliday junction ATP-dependent DNA helicase RuvB [Escherichia coli
           ABU 83972]
 gi|312288526|gb|EFR16428.1| holliday junction DNA helicase RuvB [Escherichia coli 2362-75]
 gi|315290339|gb|EFU49715.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 153-1]
 gi|323968280|gb|EGB63687.1| Holliday junction DNA helicase RuvB [Escherichia coli M863]
 gi|323977956|gb|EGB73042.1| Holliday junction DNA helicase RuvB [Escherichia coli TW10509]
 gi|324012871|gb|EGB82090.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 60-1]
 gi|324113596|gb|EGC07571.1| Holliday junction DNA helicase RuvB [Escherichia fergusonii B253]
 gi|325496997|gb|EGC94856.1| Holliday junction DNA helicase RuvB [Escherichia fergusonii ECD227]
 gi|327252986|gb|EGE64640.1| holliday junction DNA helicase RuvB [Escherichia coli STEC_7v]
 gi|331059155|gb|EGI31132.1| holliday junction DNA helicase RuvB [Escherichia coli TA143]
          Length = 336

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 196/334 (58%), Positives = 252/334 (75%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S   +  ED     +RP+ LEE+ GQ +  S +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IV R A+  GL ++D+ A E+A R+RGTPRIA RLLRRVRDFAEV H  
Sbjct: 181 LEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           TI+ +IA  AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +EPY+IQQGF+QRTPRGR+    AW H GI  P 
Sbjct: 301 LEPYLIQQGFLQRTPRGRMATVRAWNHFGITPPE 334


>gi|15802273|ref|NP_288297.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H7
           EDL933]
 gi|15831824|ref|NP_310597.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H7 str.
           Sakai]
 gi|16129813|ref|NP_416374.1| ATP-dependent DNA helicase, component of RuvABC resolvasome
           [Escherichia coli str. K-12 substr. MG1655]
 gi|82543693|ref|YP_407640.1| Holliday junction DNA helicase RuvB [Shigella boydii Sb227]
 gi|82776446|ref|YP_402795.1| Holliday junction DNA helicase RuvB [Shigella dysenteriae Sd197]
 gi|89108700|ref|AP_002480.1| ATP-dependent DNA helicase, component of RuvABC resolvasome
           [Escherichia coli str. K-12 substr. W3110]
 gi|91211085|ref|YP_541071.1| Holliday junction DNA helicase RuvB [Escherichia coli UTI89]
 gi|117624012|ref|YP_852925.1| Holliday junction DNA helicase B [Escherichia coli APEC O1]
 gi|157154884|ref|YP_001463163.1| Holliday junction DNA helicase RuvB [Escherichia coli E24377A]
 gi|157161329|ref|YP_001458647.1| Holliday junction DNA helicase RuvB [Escherichia coli HS]
 gi|168747888|ref|ZP_02772910.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H7 str.
           EC4113]
 gi|168757894|ref|ZP_02782901.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H7 str.
           EC4401]
 gi|168762346|ref|ZP_02787353.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H7 str.
           EC4501]
 gi|168770843|ref|ZP_02795850.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H7 str.
           EC4486]
 gi|168783160|ref|ZP_02808167.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H7 str.
           EC4076]
 gi|170019795|ref|YP_001724749.1| Holliday junction DNA helicase RuvB [Escherichia coli ATCC 8739]
 gi|170081516|ref|YP_001730836.1| ATP-dependent DNA helicase, component of RuvABC resolvasome
           [Escherichia coli str. K-12 substr. DH10B]
 gi|188495043|ref|ZP_03002313.1| Holliday junction DNA helicase RuvB [Escherichia coli 53638]
 gi|193066059|ref|ZP_03047116.1| Holliday junction DNA helicase RuvB [Escherichia coli E22]
 gi|193069915|ref|ZP_03050864.1| Holliday junction DNA helicase RuvB [Escherichia coli E110019]
 gi|194429647|ref|ZP_03062165.1| Holliday junction DNA helicase RuvB [Escherichia coli B171]
 gi|194433957|ref|ZP_03066229.1| Holliday junction DNA helicase RuvB [Shigella dysenteriae 1012]
 gi|194439048|ref|ZP_03071131.1| Holliday junction DNA helicase RuvB [Escherichia coli 101-1]
 gi|195940294|ref|ZP_03085676.1| Holliday junction DNA helicase B [Escherichia coli O157:H7 str.
           EC4024]
 gi|208810394|ref|ZP_03252270.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H7 str.
           EC4206]
 gi|208816613|ref|ZP_03257733.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H7 str.
           EC4045]
 gi|209399063|ref|YP_002270943.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H7 str.
           EC4115]
 gi|209919227|ref|YP_002293311.1| Holliday junction DNA helicase RuvB [Escherichia coli SE11]
 gi|217328582|ref|ZP_03444663.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H7 str.
           TW14588]
 gi|218554448|ref|YP_002387361.1| Holliday junction DNA helicase RuvB [Escherichia coli IAI1]
 gi|218558725|ref|YP_002391638.1| Holliday junction DNA helicase RuvB [Escherichia coli S88]
 gi|218689798|ref|YP_002398010.1| Holliday junction DNA helicase RuvB [Escherichia coli ED1a]
 gi|218695426|ref|YP_002403093.1| Holliday junction DNA helicase RuvB [Escherichia coli 55989]
 gi|237705814|ref|ZP_04536295.1| holliday junction helicase subunit A [Escherichia sp. 3_2_53FAA]
 gi|238901075|ref|YP_002926871.1| ATP-dependent DNA helicase, component of RuvABC resolvasome
           [Escherichia coli BW2952]
 gi|253773183|ref|YP_003036014.1| Holliday junction DNA helicase RuvB [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254161920|ref|YP_003045028.1| Holliday junction DNA helicase RuvB [Escherichia coli B str.
           REL606]
 gi|254793484|ref|YP_003078321.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H7 str.
           TW14359]
 gi|256017936|ref|ZP_05431801.1| Holliday junction DNA helicase RuvB [Shigella sp. D9]
 gi|256022474|ref|ZP_05436339.1| Holliday junction DNA helicase RuvB [Escherichia sp. 4_1_40B]
 gi|260844204|ref|YP_003221982.1| ATP-dependent DNA helicase RuvB [Escherichia coli O103:H2 str.
           12009]
 gi|260855800|ref|YP_003229691.1| ATP-dependent DNA helicase RuvB [Escherichia coli O26:H11 str.
           11368]
 gi|260868395|ref|YP_003234797.1| ATP-dependent DNA helicase RuvB [Escherichia coli O111:H- str.
           11128]
 gi|261227639|ref|ZP_05941920.1| ATP-dependent DNA helicase, component of RuvABC resolvasome
           [Escherichia coli O157:H7 str. FRIK2000]
 gi|261258195|ref|ZP_05950728.1| ATP-dependent DNA helicase RuvB [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291283042|ref|YP_003499860.1| Holliday junction ATP-dependent DNA helicase ruvB [Escherichia coli
           O55:H7 str. CB9615]
 gi|293415175|ref|ZP_06657818.1| Holliday junction DNA helicase RuvB [Escherichia coli B185]
 gi|293446247|ref|ZP_06662669.1| Holliday junction DNA helicase RuvB [Escherichia coli B088]
 gi|300816248|ref|ZP_07096470.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 107-1]
 gi|300824198|ref|ZP_07104316.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 119-7]
 gi|300904744|ref|ZP_07122574.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 84-1]
 gi|300917563|ref|ZP_07134218.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 115-1]
 gi|300924949|ref|ZP_07140876.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 182-1]
 gi|300928891|ref|ZP_07144396.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 187-1]
 gi|300951482|ref|ZP_07165317.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 116-1]
 gi|300956627|ref|ZP_07168906.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 175-1]
 gi|301029310|ref|ZP_07192407.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 196-1]
 gi|301304449|ref|ZP_07210561.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 124-1]
 gi|301327649|ref|ZP_07220857.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 78-1]
 gi|301645624|ref|ZP_07245553.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 146-1]
 gi|306814310|ref|ZP_07448476.1| Holliday junction DNA helicase RuvB [Escherichia coli NC101]
 gi|307138523|ref|ZP_07497879.1| Holliday junction DNA helicase RuvB [Escherichia coli H736]
 gi|307314228|ref|ZP_07593838.1| Holliday junction DNA helicase RuvB [Escherichia coli W]
 gi|309789256|ref|ZP_07683849.1| holliday junction DNA helicase RuvB [Shigella dysenteriae 1617]
 gi|309794241|ref|ZP_07688665.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 145-7]
 gi|312969900|ref|ZP_07784083.1| holliday junction DNA helicase RuvB [Escherichia coli 1827-70]
 gi|331642474|ref|ZP_08343609.1| holliday junction DNA helicase RuvB [Escherichia coli H736]
 gi|331647457|ref|ZP_08348549.1| holliday junction DNA helicase RuvB [Escherichia coli M605]
 gi|331653269|ref|ZP_08354274.1| holliday junction DNA helicase RuvB [Escherichia coli M718]
 gi|331668554|ref|ZP_08369402.1| holliday junction DNA helicase RuvB [Escherichia coli TA271]
 gi|331677741|ref|ZP_08378416.1| holliday junction DNA helicase RuvB [Escherichia coli H591]
 gi|331683366|ref|ZP_08383967.1| holliday junction DNA helicase RuvB [Escherichia coli H299]
 gi|332278970|ref|ZP_08391383.1| holliday junction DNA helicase RuvB [Shigella sp. D9]
 gi|67472392|sp|P0A812|RUVB_ECOLI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|67472393|sp|P0A813|RUVB_ECO57 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|97190295|sp|Q322E6|RUVB_SHIBS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|97190303|sp|Q32HA1|RUVB_SHIDS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|123266057|sp|Q1RAS4|RUVB_ECOUT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|166231490|sp|A1AC21|RUVB_ECOK1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|167012669|sp|A7ZMY4|RUVB_ECO24 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|167012670|sp|A8A160|RUVB_ECOHS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|189046031|sp|B1J0M8|RUVB_ECOLC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|226698775|sp|B5YR05|RUVB_ECO5E RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|226698776|sp|B6IBT9|RUVB_ECOSE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|226725457|sp|B7MBR9|RUVB_ECO45 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|226725459|sp|B7M2F1|RUVB_ECO8A RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|229564227|sp|B1XHC8|RUVB_ECODH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|254767426|sp|B7L7R3|RUVB_ECO55 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|254767427|sp|B7MVZ1|RUVB_ECO81 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|259495664|sp|C4ZQE4|RUVB_ECOBW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|12515916|gb|AAG56850.1|AE005408_8 Holliday junction helicase subunit A; branch migration; repair
           [Escherichia coli O157:H7 str. EDL933]
 gi|42903|emb|CAA30120.1| unnamed protein product [Escherichia coli]
 gi|147783|gb|AAA24613.1| ruvB protein [Escherichia coli]
 gi|1736507|dbj|BAA15671.1| ATP-dependent DNA helicase, component of RuvABC resolvasome
           [Escherichia coli str. K12 substr. W3110]
 gi|1788167|gb|AAC74930.1| ATP-dependent DNA helicase, component of RuvABC resolvasome
           [Escherichia coli str. K-12 substr. MG1655]
 gi|13362038|dbj|BAB35993.1| Holliday junction helicase subunit A [Escherichia coli O157:H7 str.
           Sakai]
 gi|81240594|gb|ABB61304.1| Holliday junction helicase subunit A [Shigella dysenteriae Sd197]
 gi|81245104|gb|ABB65812.1| Holliday junction helicase subunit A [Shigella boydii Sb227]
 gi|91072659|gb|ABE07540.1| RuvB protein, Holliday junction helicase subunit A [Escherichia
           coli UTI89]
 gi|115513136|gb|ABJ01211.1| Holliday junction DNA helicase ruvB [Escherichia coli APEC O1]
 gi|157067009|gb|ABV06264.1| Holliday junction DNA helicase RuvB [Escherichia coli HS]
 gi|157076914|gb|ABV16622.1| Holliday junction DNA helicase RuvB [Escherichia coli E24377A]
 gi|169754723|gb|ACA77422.1| Holliday junction DNA helicase RuvB [Escherichia coli ATCC 8739]
 gi|169889351|gb|ACB03058.1| ATP-dependent DNA helicase, component of RuvABC resolvasome
           [Escherichia coli str. K-12 substr. DH10B]
 gi|188017493|gb|EDU55615.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H7 str.
           EC4113]
 gi|188490242|gb|EDU65345.1| Holliday junction DNA helicase RuvB [Escherichia coli 53638]
 gi|188999428|gb|EDU68414.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H7 str.
           EC4076]
 gi|189355195|gb|EDU73614.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H7 str.
           EC4401]
 gi|189360310|gb|EDU78729.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H7 str.
           EC4486]
 gi|189367355|gb|EDU85771.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H7 str.
           EC4501]
 gi|192926296|gb|EDV80933.1| Holliday junction DNA helicase RuvB [Escherichia coli E22]
 gi|192956815|gb|EDV87269.1| Holliday junction DNA helicase RuvB [Escherichia coli E110019]
 gi|194412289|gb|EDX28593.1| Holliday junction DNA helicase RuvB [Escherichia coli B171]
 gi|194417829|gb|EDX33926.1| Holliday junction DNA helicase RuvB [Shigella dysenteriae 1012]
 gi|194422007|gb|EDX38011.1| Holliday junction DNA helicase RuvB [Escherichia coli 101-1]
 gi|195182922|dbj|BAG66490.1| Holliday junction helicase subunit A [Escherichia coli O111:H-]
 gi|208724910|gb|EDZ74617.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H7 str.
           EC4206]
 gi|208730956|gb|EDZ79645.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H7 str.
           EC4045]
 gi|209160463|gb|ACI37896.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H7 str.
           EC4115]
 gi|209767478|gb|ACI82051.1| Holliday junction helicase subunit A [Escherichia coli]
 gi|209767480|gb|ACI82052.1| Holliday junction helicase subunit A [Escherichia coli]
 gi|209767482|gb|ACI82053.1| Holliday junction helicase subunit A [Escherichia coli]
 gi|209767484|gb|ACI82054.1| Holliday junction helicase subunit A [Escherichia coli]
 gi|209767486|gb|ACI82055.1| Holliday junction helicase subunit A [Escherichia coli]
 gi|209912486|dbj|BAG77560.1| holliday junction helicase subunit RuvB [Escherichia coli SE11]
 gi|217317929|gb|EEC26356.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H7 str.
           TW14588]
 gi|218352158|emb|CAU97897.1| ATP-dependent DNA helicase, component of RuvABC resolvasome
           [Escherichia coli 55989]
 gi|218361216|emb|CAQ98800.1| ATP-dependent DNA helicase, component of RuvABC resolvasome
           [Escherichia coli IAI1]
 gi|218365494|emb|CAR03221.1| ATP-dependent DNA helicase, component of RuvABC resolvasome
           [Escherichia coli S88]
 gi|218427362|emb|CAR08257.2| ATP-dependent DNA helicase, component of RuvABC resolvasome
           [Escherichia coli ED1a]
 gi|222033609|emb|CAP76350.1| Holliday junction ATP-dependent DNA helicase ruvB [Escherichia coli
           LF82]
 gi|226900571|gb|EEH86830.1| holliday junction helicase subunit A [Escherichia sp. 3_2_53FAA]
 gi|238860043|gb|ACR62041.1| ATP-dependent DNA helicase, component of RuvABC resolvasome
           [Escherichia coli BW2952]
 gi|242377581|emb|CAQ32336.1| branch migration of Holliday structures; repair helicase, subunit
           of resolvasome [Escherichia coli BL21(DE3)]
 gi|253324227|gb|ACT28829.1| Holliday junction DNA helicase RuvB [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253973821|gb|ACT39492.1| Holliday junction DNA helicase B [Escherichia coli B str. REL606]
 gi|253978015|gb|ACT43685.1| Holliday junction DNA helicase B [Escherichia coli BL21(DE3)]
 gi|254592884|gb|ACT72245.1| ATP-dependent DNA helicase, component of RuvABC resolvasome
           [Escherichia coli O157:H7 str. TW14359]
 gi|257754449|dbj|BAI25951.1| ATP-dependent DNA helicase RuvB [Escherichia coli O26:H11 str.
           11368]
 gi|257759351|dbj|BAI30848.1| ATP-dependent DNA helicase RuvB [Escherichia coli O103:H2 str.
           12009]
 gi|257764751|dbj|BAI36246.1| ATP-dependent DNA helicase RuvB [Escherichia coli O111:H- str.
           11128]
 gi|260449017|gb|ACX39439.1| Holliday junction DNA helicase RuvB [Escherichia coli DH1]
 gi|290762915|gb|ADD56876.1| Holliday junction ATP-dependent DNA helicase ruvB [Escherichia coli
           O55:H7 str. CB9615]
 gi|291323077|gb|EFE62505.1| Holliday junction DNA helicase RuvB [Escherichia coli B088]
 gi|291432823|gb|EFF05802.1| Holliday junction DNA helicase RuvB [Escherichia coli B185]
 gi|294494033|gb|ADE92789.1| Holliday junction DNA helicase RuvB [Escherichia coli IHE3034]
 gi|299877736|gb|EFI85947.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 196-1]
 gi|300316609|gb|EFJ66393.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 175-1]
 gi|300403328|gb|EFJ86866.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 84-1]
 gi|300415217|gb|EFJ98527.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 115-1]
 gi|300418885|gb|EFK02196.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 182-1]
 gi|300449232|gb|EFK12852.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 116-1]
 gi|300463119|gb|EFK26612.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 187-1]
 gi|300523269|gb|EFK44338.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 119-7]
 gi|300530938|gb|EFK52000.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 107-1]
 gi|300840300|gb|EFK68060.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 124-1]
 gi|300845797|gb|EFK73557.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 78-1]
 gi|301076156|gb|EFK90962.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 146-1]
 gi|305852469|gb|EFM52920.1| Holliday junction DNA helicase RuvB [Escherichia coli NC101]
 gi|306906197|gb|EFN36715.1| Holliday junction DNA helicase RuvB [Escherichia coli W]
 gi|307626657|gb|ADN70961.1| Holliday junction DNA helicase RuvB [Escherichia coli UM146]
 gi|308122146|gb|EFO59408.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 145-7]
 gi|308923010|gb|EFP68524.1| holliday junction DNA helicase RuvB [Shigella dysenteriae 1617]
 gi|309702084|emb|CBJ01398.1| holliday junction ATP-dependent DNA helicase [Escherichia coli ETEC
           H10407]
 gi|310338185|gb|EFQ03274.1| holliday junction DNA helicase RuvB [Escherichia coli 1827-70]
 gi|312946460|gb|ADR27287.1| Holliday junction DNA helicase RuvB [Escherichia coli O83:H1 str.
           NRG 857C]
 gi|315061166|gb|ADT75493.1| ATP-dependent DNA helicase, component of RuvABC resolvasome
           [Escherichia coli W]
 gi|315136503|dbj|BAJ43662.1| Holliday junction DNA resolvasome [Escherichia coli DH1]
 gi|315257308|gb|EFU37276.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 85-1]
 gi|315286571|gb|EFU46006.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 110-3]
 gi|320173572|gb|EFW48767.1| Holliday junction DNA helicase RuvB [Shigella dysenteriae CDC
           74-1112]
 gi|320182602|gb|EFW57491.1| Holliday junction DNA helicase RuvB [Shigella boydii ATCC 9905]
 gi|320187794|gb|EFW62468.1| Holliday junction DNA helicase RuvB [Shigella flexneri CDC 796-83]
 gi|320188561|gb|EFW63223.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H7 str.
           EC1212]
 gi|320194424|gb|EFW69055.1| Holliday junction DNA helicase RuvB [Escherichia coli WV_060327]
 gi|320198054|gb|EFW72662.1| Holliday junction DNA helicase RuvB [Escherichia coli EC4100B]
 gi|320641714|gb|EFX11102.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H7 str.
           G5101]
 gi|320647074|gb|EFX15907.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H- str.
           493-89]
 gi|320652357|gb|EFX20655.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H- str.
           H 2687]
 gi|320657958|gb|EFX25720.1| Holliday junction DNA helicase RuvB [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320658531|gb|EFX26225.1| Holliday junction DNA helicase RuvB [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320668429|gb|EFX35256.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323152651|gb|EFZ38927.1| holliday junction DNA helicase RuvB [Escherichia coli EPECa14]
 gi|323158655|gb|EFZ44669.1| holliday junction DNA helicase RuvB [Escherichia coli E128010]
 gi|323174752|gb|EFZ60368.1| holliday junction DNA helicase RuvB [Escherichia coli LT-68]
 gi|323180657|gb|EFZ66202.1| holliday junction DNA helicase RuvB [Escherichia coli 1180]
 gi|323186364|gb|EFZ71714.1| holliday junction DNA helicase RuvB [Escherichia coli 1357]
 gi|323186867|gb|EFZ72186.1| holliday junction DNA helicase RuvB [Escherichia coli RN587/1]
 gi|323378257|gb|ADX50525.1| Holliday junction DNA helicase RuvB [Escherichia coli KO11]
 gi|323937118|gb|EGB33398.1| Holliday junction DNA helicase RuvB [Escherichia coli E1520]
 gi|323940472|gb|EGB36663.1| Holliday junction DNA helicase RuvB [Escherichia coli E482]
 gi|323948254|gb|EGB44242.1| Holliday junction DNA helicase RuvB [Escherichia coli H120]
 gi|323952362|gb|EGB48235.1| Holliday junction DNA helicase RuvB [Escherichia coli H252]
 gi|323956491|gb|EGB52233.1| Holliday junction DNA helicase RuvB [Escherichia coli H263]
 gi|323961915|gb|EGB57514.1| Holliday junction DNA helicase RuvB [Escherichia coli H489]
 gi|323972632|gb|EGB67835.1| Holliday junction DNA helicase RuvB [Escherichia coli TA007]
 gi|324007233|gb|EGB76452.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 57-2]
 gi|324018003|gb|EGB87222.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 117-3]
 gi|324118920|gb|EGC12809.1| Holliday junction DNA helicase RuvB [Escherichia coli E1167]
 gi|326342240|gb|EGD66021.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H7 str.
           1044]
 gi|326343790|gb|EGD67552.1| Holliday junction DNA helicase RuvB [Escherichia coli O157:H7 str.
           1125]
 gi|330911670|gb|EGH40180.1| holliday junction DNA helicase RuvB [Escherichia coli AA86]
 gi|331039272|gb|EGI11492.1| holliday junction DNA helicase RuvB [Escherichia coli H736]
 gi|331043181|gb|EGI15319.1| holliday junction DNA helicase RuvB [Escherichia coli M605]
 gi|331049367|gb|EGI21439.1| holliday junction DNA helicase RuvB [Escherichia coli M718]
 gi|331063748|gb|EGI35659.1| holliday junction DNA helicase RuvB [Escherichia coli TA271]
 gi|331074201|gb|EGI45521.1| holliday junction DNA helicase RuvB [Escherichia coli H591]
 gi|331079581|gb|EGI50778.1| holliday junction DNA helicase RuvB [Escherichia coli H299]
 gi|332090037|gb|EGI95137.1| holliday junction DNA helicase RuvB [Shigella boydii 5216-82]
 gi|332095252|gb|EGJ00279.1| holliday junction DNA helicase RuvB [Shigella dysenteriae 155-74]
 gi|332096697|gb|EGJ01688.1| holliday junction DNA helicase RuvB [Shigella boydii 3594-74]
 gi|332101322|gb|EGJ04668.1| holliday junction DNA helicase RuvB [Shigella sp. D9]
 gi|332343586|gb|AEE56920.1| holliday junction DNA helicase RuvB [Escherichia coli UMNK88]
 gi|333004713|gb|EGK24236.1| holliday junction DNA helicase RuvB [Shigella flexneri K-272]
 gi|333018433|gb|EGK37731.1| holliday junction DNA helicase RuvB [Shigella flexneri K-227]
          Length = 336

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 196/334 (58%), Positives = 252/334 (75%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S   +  ED     +RP+ LEE+ GQ +  S +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IV R A+  GL ++D+ A E+A R+RGTPRIA RLLRRVRDFAEV H  
Sbjct: 181 LEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           TI+ +IA  AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +EPY+IQQGF+QRTPRGR+    AW H GI  P 
Sbjct: 301 LEPYLIQQGFLQRTPRGRMATTRAWNHFGITPPE 334


>gi|332188830|ref|ZP_08390539.1| holliday junction DNA helicase RuvB [Sphingomonas sp. S17]
 gi|332011140|gb|EGI53236.1| holliday junction DNA helicase RuvB [Sphingomonas sp. S17]
          Length = 341

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 217/332 (65%), Positives = 264/332 (79%), Gaps = 1/332 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D++ LLS +   ED D + LRP++L+EF GQ  A  NL+VFI+AAK R +ALDHVLF 
Sbjct: 1   MTDQDRLLSASRRPEDVD-AALRPKSLDEFVGQHAARDNLRVFIQAAKGRGDALDHVLFF 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++ARE+GV FR+TSGPVIAK+GDLAALLTNLED DVLFIDEIHRL   
Sbjct: 60  GPPGLGKTTLAQIIAREMGVGFRATSGPVIAKSGDLAALLTNLEDGDVLFIDEIHRLQPA 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMED  LDLM+GEGPSARSV+I+L RFTL+ ATTR GLLT PL+DRFGIP+RL
Sbjct: 120 VEEVLYPAMEDRVLDLMIGEGPSARSVRIDLPRFTLVGATTRQGLLTTPLRDRFGIPVRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY +E+L  +V R A+L  L + ++ A E+A RSRGTPRIAGRLLRRVRDFA VA  + 
Sbjct: 180 QFYTVEELTRVVTRAARLLDLPIAEDGAIEVARRSRGTPRIAGRLLRRVRDFASVAGHEI 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +    AD AL RL +D +G D +D RYLTMIA  + GGPVG+ET++AGLSEPRD IE++I
Sbjct: 240 VHAAAADQALNRLEVDSLGLDAMDRRYLTMIADVYRGGPVGVETLAAGLSEPRDTIEEVI 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EPY+IQ G + RT RGR+L P  W+HLG++ P
Sbjct: 300 EPYLIQLGLLARTARGRILNPGGWKHLGLNPP 331


>gi|152970922|ref|YP_001336031.1| Holliday junction DNA helicase RuvB [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238895437|ref|YP_002920172.1| Holliday junction DNA helicase RuvB [Klebsiella pneumoniae
           NTUH-K2044]
 gi|330001164|ref|ZP_08303910.1| Holliday junction DNA helicase RuvB [Klebsiella sp. MS 92-3]
 gi|166231498|sp|A6TB30|RUVB_KLEP7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|150955771|gb|ABR77801.1| Holliday junction DNA helicase RuvB [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238547754|dbj|BAH64105.1| Holliday junction DNA helicase [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|328537775|gb|EGF63975.1| Holliday junction DNA helicase RuvB [Klebsiella sp. MS 92-3]
          Length = 336

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 199/334 (59%), Positives = 253/334 (75%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S + S  E+A    +RP+ L E+ GQ +  S +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRLVSADSSGFEEAADRAIRPKLLAEYVGQPQVRSQMEIFIQAAKLRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY+I DL+ IV R A+  GL ++DE A E+A RSRGTPRIA RLLRRVRDFAEV H  
Sbjct: 181 LEFYQIPDLQHIVSRSARHMGLEMSDEGALEVARRSRGTPRIANRLLRRVRDFAEVRHDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           TI+ +IA  AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +EPY+IQQGF+QRTPRGR+    AW H GI  P 
Sbjct: 301 LEPYLIQQGFLQRTPRGRMATVRAWNHFGITPPE 334


>gi|78221966|ref|YP_383713.1| Holliday junction DNA helicase RuvB [Geobacter metallireducens
           GS-15]
 gi|97190079|sp|Q39XN6|RUVB_GEOMG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|78193221|gb|ABB30988.1| Holliday junction DNA helicase RuvB [Geobacter metallireducens
           GS-15]
          Length = 338

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 187/327 (57%), Positives = 246/327 (75%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            L++ +++++D   S LRPR L+++ GQ +A  NL+VFI+AA+ R EALDHVL  GPPGL
Sbjct: 3   RLVTPDITEDDLIESSLRPRALDDYIGQEKAKGNLRVFIDAARKRGEALDHVLLYGPPGL 62

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLA ++A E+GVN +STSGPVI + GDLAA+LTNLE  DVLFIDEIHRLS +VEEIL
Sbjct: 63  GKTTLANIIACEMGVNIKSTSGPVIERPGDLAAILTNLEPHDVLFIDEIHRLSHVVEEIL 122

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           YPAMED+QLD+++G+GPSAR++K++L +FTL+ ATTR GLL++PL+DRFG+  RL FY  
Sbjct: 123 YPAMEDYQLDIIIGQGPSARTIKLDLPKFTLVGATTRAGLLSSPLRDRFGVISRLEFYTD 182

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           ++L TIV R A++  + +  E   E+A RSRGTPRIA RLLRRVRDFA+V     IT  +
Sbjct: 183 DELTTIVTRSARILNIGIEPEGGRELARRSRGTPRIANRLLRRVRDFAQVRADGVITAPV 242

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
            D +L  L ID+ GFD +D   +  I   FGGGPVG++TI+A + E RD IED+ EP++I
Sbjct: 243 VDESLKLLEIDEKGFDHMDRTIMLTIIDKFGGGPVGLDTIAAAIGEERDTIEDVYEPFLI 302

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           Q GFI RTPRGR+    A++H G   P
Sbjct: 303 QHGFINRTPRGRVATRAAYEHFGRIAP 329


>gi|95931134|ref|ZP_01313859.1| Holliday junction DNA helicase RuvB [Desulfuromonas acetoxidans DSM
           684]
 gi|95132824|gb|EAT14498.1| Holliday junction DNA helicase RuvB [Desulfuromonas acetoxidans DSM
           684]
          Length = 341

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 192/323 (59%), Positives = 254/323 (78%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           + L+S  +S ED   + LRPRTL E+ GQ +A  NL+VFI+AA  R+EALDHVLF GPPG
Sbjct: 3   DRLISAELSDEDNIDNPLRPRTLNEYIGQEKAKENLEVFIQAALNRSEALDHVLFYGPPG 62

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLA ++A E+GV+ +STSGPVI KAGDLAA+LTNLE+ DVLFIDEIHRLS +VEEI
Sbjct: 63  LGKTTLANIIASEMGVSIKSTSGPVIEKAGDLAAILTNLEEGDVLFIDEIHRLSPVVEEI 122

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPAMED+Q+D+M+G+GPSAR++K+++ RFTL+ ATTR GLL++PL+DRFG+  RL FY 
Sbjct: 123 LYPAMEDYQIDIMIGQGPSARTIKLDIPRFTLVGATTRAGLLSSPLRDRFGVICRLQFYT 182

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
              L  IV+R A + G+ + ++ A EIA RSRGTPRIA RLLRRVRDFA+V +  +I  +
Sbjct: 183 HAQLAVIVKRSASILGVPIDEKGALEIARRSRGTPRIANRLLRRVRDFAQVQNDGSINCD 242

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           IAD AL RL +DK+GFD +D   L  I   F GGPVG++T++A + E +D IE++IEP++
Sbjct: 243 IADTALTRLEVDKIGFDHMDCLMLQTIMDKFSGGPVGLDTLAAAIGEEKDTIEEVIEPFL 302

Query: 305 IQQGFIQRTPRGRLLMPIAWQHL 327
           +QQG+I RTPRGR++  +A++H 
Sbjct: 303 LQQGYINRTPRGRMVTELAYRHF 325


>gi|291536275|emb|CBL09387.1| Holliday junction DNA helicase, RuvB subunit [Roseburia
           intestinalis M50/1]
          Length = 330

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 174/328 (53%), Positives = 245/328 (74%), Gaps = 1/328 (0%)

Query: 4   REGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
            + ++S  V +ED  I   LRP+TL+++ GQ +A  NLKV+IEAAK R E+LDHVLF GP
Sbjct: 2   EKRVISTQVQEEDIKIEKSLRPQTLDDYIGQQKAKENLKVYIEAAKQRGESLDHVLFYGP 61

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++A E+G + + TSGP I K G++AA+L+NL++ DVLF+DEIHRL+  VE
Sbjct: 62  PGLGKTTLAGIIANEMGTHLKVTSGPAIGKPGEMAAILSNLQEGDVLFVDEIHRLNRQVE 121

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMED+ +D+M+G+G +AR+++++L +FTL+ ATTR GLL+ PL+DRFG+   L F
Sbjct: 122 EVLYPAMEDYVIDIMIGKGATARAIRLDLPKFTLVGATTRAGLLSAPLRDRFGVVHHLEF 181

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y +E+LKTI+   AK  G+ + +E A E+A RSRGTPR+A RLL+RVRDFAEV +   I+
Sbjct: 182 YTVEELKTIILHSAKTLGVEIDEEGAFELARRSRGTPRLANRLLKRVRDFAEVKYDGKIS 241

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           +E+A  AL  L +DKMG DQ D   L ++   F GGPVG++T++A + E    IED+ EP
Sbjct: 242 KEVAAFALDLLEVDKMGLDQNDRNILKIMIEKFSGGPVGLDTLAAAIGEDSGTIEDVYEP 301

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           Y+++ GFI RTP+GR++   A+QH G+ 
Sbjct: 302 YLVKNGFINRTPKGRMVTDFAYQHFGLT 329


>gi|74311810|ref|YP_310229.1| Holliday junction DNA helicase RuvB [Shigella sonnei Ss046]
 gi|97190309|sp|Q3Z2L8|RUVB_SHISS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|73855287|gb|AAZ87994.1| Holliday junction helicase subunit A [Shigella sonnei Ss046]
 gi|323165017|gb|EFZ50807.1| holliday junction DNA helicase RuvB [Shigella sonnei 53G]
          Length = 336

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 196/334 (58%), Positives = 252/334 (75%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S   +  ED     +RP+ LEE+ GQ +  S +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRLISAGTTLPEDGADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IV R A+  GL ++D+ A E+A R+RGTPRIA RLLRRVRDFAEV H  
Sbjct: 181 LEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           TI+ +IA  AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +EPY+IQQGF+QRTPRGR+    AW H GI  P 
Sbjct: 301 LEPYLIQQGFLQRTPRGRMATTRAWNHFGITPPE 334


>gi|283832741|ref|ZP_06352482.1| holliday junction DNA helicase RuvB [Citrobacter youngae ATCC
           29220]
 gi|291072424|gb|EFE10533.1| holliday junction DNA helicase RuvB [Citrobacter youngae ATCC
           29220]
          Length = 336

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 197/334 (58%), Positives = 253/334 (75%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSR-NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S  + + ED     +RP+ LEE+ GQ +  S +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRLISAVSNTPEDLVDRAIRPKLLEEYIGQPQVRSQMEIFIQAAKLRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IV R A+  GL ++DE A E+A R+RGTPRIA RLLRRVRDFAEV H  
Sbjct: 181 LEFYQVADLQHIVGRSARFMGLEMSDEGALEVARRARGTPRIANRLLRRVRDFAEVKHDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           TI+ +IA  AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +EPY+IQQGF+QRTPRGR+    AW H GI  P 
Sbjct: 301 LEPYLIQQGFLQRTPRGRMATVRAWNHFGITPPE 334


>gi|261340246|ref|ZP_05968104.1| holliday junction DNA helicase RuvB [Enterobacter cancerogenus ATCC
           35316]
 gi|288317331|gb|EFC56269.1| holliday junction DNA helicase RuvB [Enterobacter cancerogenus ATCC
           35316]
          Length = 336

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 197/333 (59%), Positives = 252/333 (75%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S   S  ED     +RP+ L+E+ GQ +  S +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRLVSAVSSMPEDVVDRAIRPKLLDEYIGQPQVRSQMEIFIQAAKLRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IV R A+  GL +++E A E+A RSRGTPRIA RLLRRVRDFAEV H  
Sbjct: 181 LEFYQVPDLQHIVGRSARFMGLEMSEEGAYEVAKRSRGTPRIANRLLRRVRDFAEVKHDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           +I+ +IA  AL  L +D  GFD +D + L  I   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 SISADIAAQALDMLNVDAEGFDYMDRKLLLAILDKFFGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           +EPY+IQQGF+QRTPRGR+    AW H GI  P
Sbjct: 301 LEPYLIQQGFLQRTPRGRMATARAWDHFGITPP 333


>gi|242239573|ref|YP_002987754.1| Holliday junction DNA helicase RuvB [Dickeya dadantii Ech703]
 gi|242131630|gb|ACS85932.1| Holliday junction DNA helicase RuvB [Dickeya dadantii Ech703]
          Length = 334

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 194/331 (58%), Positives = 255/331 (77%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S +V ++E+     +RP+TL E+ GQ + C  +++FI+AA+ R +ALDH+L 
Sbjct: 1   MIEADRLISPSVIAEEEVQDRAIRPKTLAEYVGQPKVCEQMEIFIQAARKRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAALLTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAALLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IVQR A+  GL +TDE A E+A RSRGTPRIA RLLRRVRDF+EV    
Sbjct: 181 LEFYQVADLQHIVQRSAQCLGLEMTDEGALEVARRSRGTPRIANRLLRRVRDFSEVKSDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT E+A  AL  LA+D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 VITMEVAMQALDMLAVDAEGFDYMDRKLLLAVIDKFMGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           +EPY+IQQGF+QRTPRGR+    A++H G+ 
Sbjct: 301 LEPYLIQQGFLQRTPRGRIATQHAYRHFGLS 331


>gi|227823319|ref|YP_002827291.1| Holliday junction DNA helicase RuvB [Sinorhizobium fredii NGR234]
 gi|227342320|gb|ACP26538.1| holliday junction DNA helicase RuvB [Sinorhizobium fredii NGR234]
          Length = 349

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 249/333 (74%), Positives = 293/333 (87%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M +   L++     ED D + LRP++L+EFTGQ EA +NLK+FIEAA+ R EALDHVLFV
Sbjct: 4   MTEAARLIAPEKRGEDLD-ATLRPQSLDEFTGQAEARANLKIFIEAARNRGEALDHVLFV 62

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++A+ELGVNFRSTSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRL+  
Sbjct: 63  GPPGLGKTTLAQIMAKELGVNFRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLNPA 122

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILYPAMEDFQLDL++GEGP+ARSVKI+L++FTL+AATTR+GLLT PL+DRFGIP+RL
Sbjct: 123 VEEILYPAMEDFQLDLIIGEGPAARSVKIDLAKFTLVAATTRLGLLTTPLRDRFGIPVRL 182

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           NFY +E+L+ IV+RGA+L GL +TDE A EIA R+RGTPRIAGRLLRRVRDFAEVA A+ 
Sbjct: 183 NFYTVEELELIVRRGARLMGLGMTDEGAREIARRARGTPRIAGRLLRRVRDFAEVARAEA 242

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +TR+IAD AL RL +D MG DQLD RYL MIA+NFGGGPVGIETI+AGLSEPRDAIED+I
Sbjct: 243 VTRQIADEALTRLLVDSMGLDQLDRRYLFMIAQNFGGGPVGIETIAAGLSEPRDAIEDII 302

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY+IQQGFIQRTPRGR+L   AW+HLG++ P 
Sbjct: 303 EPYLIQQGFIQRTPRGRVLTANAWKHLGLNPPK 335


>gi|206580921|ref|YP_002237748.1| Holliday junction DNA helicase RuvB [Klebsiella pneumoniae 342]
 gi|288934606|ref|YP_003438665.1| Holliday junction DNA helicase RuvB [Klebsiella variicola At-22]
 gi|226698780|sp|B5XQ05|RUVB_KLEP3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|206569979|gb|ACI11755.1| Holliday junction DNA helicase RuvB [Klebsiella pneumoniae 342]
 gi|288889315|gb|ADC57633.1| Holliday junction DNA helicase RuvB [Klebsiella variicola At-22]
          Length = 336

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 198/334 (59%), Positives = 253/334 (75%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S + S  E+A    +RP+ L E+ GQ +  S +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRLVSADSSGAEEAVDRAIRPKLLAEYVGQPQVRSQMEIFIQAAKLRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY+I DL+ IV R A+  GL ++DE A E+A RSRGTPRIA RLLRRVRDFAEV H  
Sbjct: 181 LEFYQIPDLQHIVSRSARHMGLEMSDEGALEVARRSRGTPRIANRLLRRVRDFAEVRHDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           +I+ +IA  AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 SISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +EPY+IQQGF+QRTPRGR+    AW H GI  P 
Sbjct: 301 LEPYLIQQGFLQRTPRGRMATVRAWNHFGITPPE 334


>gi|89094838|ref|ZP_01167771.1| Holliday junction DNA helicase RuvB [Oceanospirillum sp. MED92]
 gi|89080893|gb|EAR60132.1| Holliday junction DNA helicase RuvB [Oceanospirillum sp. MED92]
          Length = 337

 Score =  389 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 192/334 (57%), Positives = 247/334 (73%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSR-NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ +  +S  +   E+A    +RP++LE++ GQ      +++FI+AAK R+EALDH L 
Sbjct: 1   MIEADRFISPLSNPVEEAQDRAIRPKSLEDYVGQPVVREQMEIFIQAAKMRSEALDHTLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A E+G   ++TSGPV+ KAGDLAALLTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIIANEMGSEIKTTSGPVLEKAGDLAALLTNLEPNDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEE+LYPAMED+QLD+M+GEGP+ARS+K+ L  FTL+ ATTR GLLT+PL+DRFGI  R
Sbjct: 121 NVEEVLYPAMEDYQLDIMIGEGPAARSIKLELPPFTLVGATTRAGLLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY ++DL +IV R A L+G  + D+ A E+A RSRGTPRIA RLLRR RD+AEV    
Sbjct: 181 LEFYNVDDLTSIVSRSANLSGTGIDDQGAREVAKRSRGTPRIANRLLRRARDYAEVKGDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  EIAD AL  L +D  GFD LD R L  +   F GGPVG+E+++A +SE RD IED+
Sbjct: 241 VINNEIADKALNMLNVDHHGFDHLDRRMLLTMIEKFAGGPVGVESLAAAISEERDTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +EPY+IQQGF+ RTPRGR++   A++H GI  P 
Sbjct: 301 LEPYLIQQGFVMRTPRGRVVTDHAYKHFGIAKPD 334


>gi|307244276|ref|ZP_07526391.1| Holliday junction DNA helicase RuvB [Peptostreptococcus stomatis
           DSM 17678]
 gi|306492426|gb|EFM64464.1| Holliday junction DNA helicase RuvB [Peptostreptococcus stomatis
           DSM 17678]
          Length = 337

 Score =  389 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 183/334 (54%), Positives = 254/334 (76%), Gaps = 1/334 (0%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD E +++ ++ +ED DI   LRP++L+E+ GQ ++   L++FI+AAK+R+E+LDHVL  
Sbjct: 1   MDEERIITSSMKEEDFDIENSLRPKSLDEYLGQEKSKEQLRIFIDAAKSRSESLDHVLLY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A E+GVN R TSGP I +AGDLAA+LTNL++ DVLFIDEIHR++  
Sbjct: 61  GPPGLGKTTLASIIANEMGVNLRITSGPAIERAGDLAAILTNLQENDVLFIDEIHRINRS 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDF LD+++G+GPSARS++++L +FTLI ATTR G+LTNPL+DRFG+  +L
Sbjct: 121 VEEVLYPAMEDFCLDIIIGKGPSARSIRLDLPKFTLIGATTRAGMLTNPLRDRFGVICKL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           ++Y+ ++L  IV+R + +    + D+ A EIA RSRGTPRIA RLL+RVRDFA+V     
Sbjct: 181 DYYKEDELAEIVRRSSGILNAGIMDDGAVEIARRSRGTPRIANRLLKRVRDFAQVKADGN 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           IT ++  AAL  L +D +G D +D + L  I   F GGPVG++T++A + E R+ IED+ 
Sbjct: 241 ITDQVTQAALELLGVDSLGLDFVDKKLLMTIIEKFNGGPVGLDTLAASIGEDRNTIEDVY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           EPY++Q GFI R PRGR+ MP A+QHLGI    +
Sbjct: 301 EPYLLQLGFINRAPRGRIAMPRAYQHLGIPYEEK 334


>gi|222149654|ref|YP_002550611.1| Holliday junction DNA helicase RuvB [Agrobacterium vitis S4]
 gi|254767403|sp|B9JRX1|RUVB_AGRVS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|221736636|gb|ACM37599.1| Holliday junction DNA helicase RuvB [Agrobacterium vitis S4]
          Length = 347

 Score =  389 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 255/333 (76%), Positives = 292/333 (87%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M  +  +L+     ED D S LRP+TL++FTGQ EA +NLK+FIEAAK R EALDHVLFV
Sbjct: 1   MSAQNPVLTPEKRGEDVD-SALRPQTLDDFTGQAEARANLKIFIEAAKNRGEALDHVLFV 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++A+ELGVNFRSTSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRLS  
Sbjct: 60  GPPGLGKTTLAQIMAKELGVNFRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSPA 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILYPAMEDFQLDL++GEGP+ARSVKI+LS+FTL+AATTR+GLLT PL+DRFGIP+RL
Sbjct: 120 VEEILYPAMEDFQLDLIIGEGPAARSVKIDLSKFTLVAATTRLGLLTTPLRDRFGIPVRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           +FY +E+L+ IV+RGA+L GL +TD+ A EIA R+RGTPRIAGRLLRRVRDFAEVA A  
Sbjct: 180 SFYTVEELELIVRRGARLMGLGMTDDGAREIARRARGTPRIAGRLLRRVRDFAEVARAPA 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +TREIAD AL RL +D MG DQLD RYLTMIA NFGGGPVGIETI+AGLSEPRDAIED+I
Sbjct: 240 VTREIADEALTRLLVDNMGLDQLDTRYLTMIAVNFGGGPVGIETIAAGLSEPRDAIEDII 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPYMIQQGFIQRTPRGR+L  IAW+HLG+  P 
Sbjct: 300 EPYMIQQGFIQRTPRGRVLTAIAWKHLGLMPPK 332


>gi|307826390|ref|ZP_07656592.1| Holliday junction DNA helicase RuvB [Methylobacter tundripaludum
           SV96]
 gi|307732567|gb|EFO03442.1| Holliday junction DNA helicase RuvB [Methylobacter tundripaludum
           SV96]
          Length = 344

 Score =  388 bits (997), Expect = e-106,   Method: Composition-based stats.
 Identities = 192/335 (57%), Positives = 248/335 (74%), Gaps = 1/335 (0%)

Query: 1   MMDREGLLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + +++ +  S E+     +RP+ L ++ GQ E    +++FI+AA AR EALDHVL 
Sbjct: 1   MIESDRMVTAHSHSDEERQDRAIRPKRLADYIGQKELREQMEIFIQAATARQEALDHVLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A E+ V  R TSGPV+ KAGDLAALLTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIIAAEMCVKIRQTSGPVLDKAGDLAALLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEEILYPAMED+QLDLM+GEGP+ARS+K++L  FTL+ ATTR GLLT+PL+DRFGI  R
Sbjct: 121 AVEEILYPAMEDYQLDLMIGEGPAARSIKLDLPPFTLVGATTRAGLLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY +++L  IV R AK+ G+A+    A EIA RSRGTPRIA RLLRRVRD+AEV    
Sbjct: 181 LEFYTVDELANIVARSAKVLGIAMEPRGAYEIARRSRGTPRIANRLLRRVRDYAEVKGNG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           TIT E++  AL  L +D  GFD LD + L  +  +F GGPVG++T++A +SE R  IED+
Sbjct: 241 TITEELSFQALEMLKVDNNGFDSLDRKLLLAMIESFAGGPVGLDTLAAAISEERGTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           +EPY++QQGFI RTPRGR++   A+ H G+  P +
Sbjct: 301 VEPYLLQQGFIMRTPRGRVVTQNAYLHFGLQPPKQ 335


>gi|290508807|ref|ZP_06548178.1| Holliday junction DNA helicase RuvB [Klebsiella sp. 1_1_55]
 gi|289778201|gb|EFD86198.1| Holliday junction DNA helicase RuvB [Klebsiella sp. 1_1_55]
          Length = 336

 Score =  388 bits (997), Expect = e-106,   Method: Composition-based stats.
 Identities = 197/334 (58%), Positives = 253/334 (75%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S + +  E+A    +RP+ L E+ GQ +  S +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRLVSADSNGAEEAVDRAIRPKLLAEYVGQPQVRSQMEIFIQAAKLRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY+I DL+ IV R A+  GL ++DE A E+A RSRGTPRIA RLLRRVRDFAEV H  
Sbjct: 181 LEFYQIPDLQHIVSRSARHMGLEMSDEGALEVARRSRGTPRIANRLLRRVRDFAEVRHDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           +I+ +IA  AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 SISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +EPY+IQQGF+QRTPRGR+    AW H GI  P 
Sbjct: 301 LEPYLIQQGFLQRTPRGRMATVRAWNHFGITPPE 334


>gi|301050786|ref|ZP_07197643.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 185-1]
 gi|300297541|gb|EFJ53926.1| Holliday junction DNA helicase RuvB [Escherichia coli MS 185-1]
          Length = 336

 Score =  388 bits (997), Expect = e-106,   Method: Composition-based stats.
 Identities = 195/334 (58%), Positives = 251/334 (75%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S   +  ED     +RP+ LEE+ GQ +  S +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IV R A+  GL ++D+ A E+A R+RGTPRIA RLLRRVRDFAEV H  
Sbjct: 181 LEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           TI+ +IA  AL  L +D  GFD +D + L  +   F  GPVG++ ++A + E R+ IED+
Sbjct: 241 TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFCGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +EPY+IQQGF+QRTPRGR+    AW H GI  P 
Sbjct: 301 LEPYLIQQGFLQRTPRGRMATVRAWNHFGITPPE 334


>gi|239832788|ref|ZP_04681117.1| Holliday junction DNA helicase RuvB [Ochrobactrum intermedium LMG
           3301]
 gi|239825055|gb|EEQ96623.1| Holliday junction DNA helicase RuvB [Ochrobactrum intermedium LMG
           3301]
          Length = 346

 Score =  388 bits (997), Expect = e-106,   Method: Composition-based stats.
 Identities = 240/332 (72%), Positives = 285/332 (85%), Gaps = 2/332 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M DR  L++ +   ++   + LRP+ L++F GQ  A +NLKVFIEAAK R EALDHVLFV
Sbjct: 1   MSDRNPLINPDSRADE--DNTLRPQMLDDFVGQAAARANLKVFIEAAKVRGEALDHVLFV 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++A+ELGVNFRSTSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRLS  
Sbjct: 59  GPPGLGKTTLAQIMAKELGVNFRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSPA 118

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILYPAMEDFQLDL++GEGP+ARSVKI+L++FTL+AATTR+GLLT PL+DRFGIP+RL
Sbjct: 119 VEEILYPAMEDFQLDLIIGEGPAARSVKIDLAKFTLVAATTRLGLLTTPLRDRFGIPVRL 178

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           NFY +E+L+ IV+RGA++  + ++ + A E+A RSRGTPRIAGRLLRRVRDFA VA A  
Sbjct: 179 NFYTVEELEYIVRRGARIMQMGISPDGALEVARRSRGTPRIAGRLLRRVRDFALVAGADV 238

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I R+IAD AL RL +D  G DQLD RYL +IARNFGGGPVGIETI+AGLSEPRDAIED+I
Sbjct: 239 IDRKIADEALSRLEVDNRGLDQLDRRYLNIIARNFGGGPVGIETIAAGLSEPRDAIEDII 298

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EPY+IQQGF+QRTPRGR+L  +AWQHLG+  P
Sbjct: 299 EPYLIQQGFLQRTPRGRVLTAVAWQHLGLPAP 330


>gi|157145361|ref|YP_001452680.1| Holliday junction DNA helicase RuvB [Citrobacter koseri ATCC
           BAA-895]
 gi|166231482|sp|A8AFI1|RUVB_CITK8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|157082566|gb|ABV12244.1| hypothetical protein CKO_01101 [Citrobacter koseri ATCC BAA-895]
          Length = 336

 Score =  388 bits (996), Expect = e-106,   Method: Composition-based stats.
 Identities = 196/334 (58%), Positives = 252/334 (75%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S   +Q E+     +RP+ LEE+ GQ +  S +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRLISAGGTQVEEVADRAIRPKLLEEYIGQPQVRSQMEIFIQAAKLRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IV R A+  GL ++DE A E+A R+RGTPRIA RLLRRVRDFAEV H  
Sbjct: 181 LEFYQVPDLQHIVGRSARFMGLEMSDEGALEVARRARGTPRIANRLLRRVRDFAEVKHNG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I+ +IA  AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 AISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +EPY+IQQGF+QRTPRGR+    AW H GI  P 
Sbjct: 301 LEPYLIQQGFLQRTPRGRMATVRAWNHFGITPPE 334


>gi|322832436|ref|YP_004212463.1| Holliday junction DNA helicase RuvB [Rahnella sp. Y9602]
 gi|321167637|gb|ADW73336.1| Holliday junction DNA helicase RuvB [Rahnella sp. Y9602]
          Length = 335

 Score =  388 bits (996), Expect = e-106,   Method: Composition-based stats.
 Identities = 195/331 (58%), Positives = 250/331 (75%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S  V S+E+     +RP+ L E+ GQ    S +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRLISPEVFSEEEVIDRAIRPKLLSEYVGQPHVRSQMEIFIQAAKQRKDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IV R A   GL +++E A +IA RSRGTPRIA RLLRRVRDFAEV    
Sbjct: 181 LEFYQVADLQHIVGRSASCLGLELSEEGAHQIARRSRGTPRIANRLLRRVRDFAEVKGDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           TI  ++A+ AL  L +D  GFD +D + L  I   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 TINGDVANGALDMLDVDAEGFDYMDRKLLLAIIDKFSGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           IEP++IQQGFIQRTPRGR+    A++H GI 
Sbjct: 301 IEPFLIQQGFIQRTPRGRMATNHAYKHFGIA 331


>gi|253578704|ref|ZP_04855975.1| Holliday junction DNA helicase RuvA [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849647|gb|EES77606.1| Holliday junction DNA helicase RuvA [Ruminococcus sp. 5_1_39BFAA]
          Length = 334

 Score =  388 bits (996), Expect = e-106,   Method: Composition-based stats.
 Identities = 172/332 (51%), Positives = 250/332 (75%), Gaps = 1/332 (0%)

Query: 4   REGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
            + +++ +V++ED  +   LRP+TL+++ GQ +  S LKV+IEAAK R +ALDHVLF GP
Sbjct: 2   EKRIITTDVTEEDFSLEGNLRPQTLDDYIGQEKTKSTLKVYIEAAKQRHDALDHVLFYGP 61

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTL+ ++A E+GV+ + TSGP I K G++AA+L NL++ D+LF+DEIHRL+  VE
Sbjct: 62  PGLGKTTLSGIIANEMGVHMKVTSGPAIEKPGEMAAILNNLQEGDILFVDEIHRLNRQVE 121

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMED+ +D+M+G+G SARS++++L +FTL+ ATTR GLL+ PL+DRFG+   L F
Sbjct: 122 EVLYPAMEDYAIDIMIGKGASARSIRLDLPKFTLVGATTRAGLLSAPLRDRFGVMHHLEF 181

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  E+LKTI+ R A++ G+ + ++ A EIA RSRGTPR+A RLL+RVRDFA+V +   IT
Sbjct: 182 YTHEELKTIIIRSAQVLGVEIDEKGAAEIAKRSRGTPRLANRLLKRVRDFAQVKYDGRIT 241

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            ++A  AL  L +D+ G D++D R L  +  NF GGPVG+ET++A + E    +ED+ EP
Sbjct: 242 YDVACFALNLLEVDQYGLDKIDRRILQTMIVNFQGGPVGLETLAAAIGEDSGTLEDVYEP 301

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           Y++Q GF+ RTPRGR+   +A++HLG  +P +
Sbjct: 302 YLLQNGFLNRTPRGRMASALAYEHLGYQMPEK 333


>gi|224827247|ref|ZP_03700341.1| Holliday junction DNA helicase RuvB [Lutiella nitroferrum 2002]
 gi|224600536|gb|EEG06725.1| Holliday junction DNA helicase RuvB [Lutiella nitroferrum 2002]
          Length = 344

 Score =  388 bits (996), Expect = e-106,   Method: Composition-based stats.
 Identities = 195/329 (59%), Positives = 244/329 (74%), Gaps = 2/329 (0%)

Query: 4   REGLLSRNV--SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
              L+++    +QE+A    LRP+ L+++ GQ +A   L++FIEAAK R EALDHVL  G
Sbjct: 13  ERRLVTQQSLSAQEEALERALRPKALDDYVGQKKAREQLEIFIEAAKKRGEALDHVLLFG 72

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA +VARE+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +V
Sbjct: 73  PPGLGKTTLAHIVAREMGVNLRQTSGPVLERAGDLAALLTNLEPHDVLFIDEIHRLSPVV 132

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILYPA+ED+Q+D+M+GEGP+ARSVKI+L  FTL+ ATTR G+LTNPL+DRFGI  RL 
Sbjct: 133 EEILYPALEDYQIDIMIGEGPAARSVKIDLPPFTLVGATTRAGMLTNPLRDRFGIVARLE 192

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY  E+L  IV R A L  + + D  A E+A RSRGTPRIA RLLRRVRD+AEV     +
Sbjct: 193 FYTPEELTRIVSRSAGLLNVTLADNGAFEVARRSRGTPRIANRLLRRVRDYAEVKADGVV 252

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T  +ADAAL  L +D  G D +D + L  I   F GGPVG++ ++A + E  D IED+IE
Sbjct: 253 TATVADAALAMLDVDPAGLDVMDRKLLAAILEKFAGGPVGLDNVAAAIGESSDTIEDVIE 312

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           PY+IQQG++QRTPRGR+    A+QH G+ 
Sbjct: 313 PYLIQQGYLQRTPRGRMATAQAYQHFGLP 341


>gi|90022178|ref|YP_528005.1| Holliday junction DNA helicase RuvB [Saccharophagus degradans 2-40]
 gi|123395885|sp|Q21HN6|RUVB_SACD2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|89951778|gb|ABD81793.1| Holliday junction DNA helicase RuvB [Saccharophagus degradans 2-40]
          Length = 344

 Score =  388 bits (996), Expect = e-106,   Method: Composition-based stats.
 Identities = 195/333 (58%), Positives = 256/333 (76%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++++ ++  N  S+E+     +RP++L+E+ GQ      +++FI AA+AR ++LDH L 
Sbjct: 1   MIEQDRIIDANAKSREEQIDRAVRPKSLKEYIGQPVVREQMEIFIGAAQARGDSLDHTLV 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A E+G + +STSGPV+ KAGDLAAL+TNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIIAAEMGADLKSTSGPVLEKAGDLAALMTNLEPGDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPAMEDFQLD+M+GEGP+ARS+K+ L  FTL+ ATTR GLLT+PL+DRFGI  R
Sbjct: 121 VVEEILYPAMEDFQLDIMIGEGPAARSIKLELPPFTLVGATTRAGLLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY IEDL  IV+R A L G+A+    A E+A RSRGTPRIA RLLRRVRD+AEV    
Sbjct: 181 LEFYNIEDLTHIVERSASLMGVAMDTPGAREVAKRSRGTPRIANRLLRRVRDYAEVKSDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           T+T +IAD AL  L +D+ GFD +D R L  +   FGGGPVG+++++A +SE RD IED+
Sbjct: 241 TVTAQIADLALNMLNVDEHGFDHMDRRLLLTLIEKFGGGPVGVDSLAAAISEERDTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           +EPY+IQQGFI RTPRGR+   +A+QH G+++P
Sbjct: 301 LEPYLIQQGFIMRTPRGRMATQLAYQHFGLNVP 333


>gi|296101801|ref|YP_003611947.1| Holliday junction DNA helicase RuvB [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295056260|gb|ADF60998.1| Holliday junction DNA helicase RuvB [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 336

 Score =  387 bits (995), Expect = e-106,   Method: Composition-based stats.
 Identities = 195/333 (58%), Positives = 252/333 (75%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSR-NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S   +  +D     +RP+ L+E+ GQ +  S +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRLVSAGTIQADDVVDRAIRPKLLDEYIGQPQVRSQMEIFIQAAKLRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IV R A+  GL +++E A E+A RSRGTPRIA RLLRRVRDFAEV H  
Sbjct: 181 LEFYQVADLQHIVGRSARYMGLDMSEEGAFEVAKRSRGTPRIANRLLRRVRDFAEVKHDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           +I+ EIA  AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 SISAEIAAQALDMLNVDAEGFDYMDRKLLLAVLDKFFGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           +EPY+IQQGF+QRTPRGR+    AW H GI  P
Sbjct: 301 LEPYLIQQGFLQRTPRGRMATVRAWNHFGITPP 333


>gi|226311453|ref|YP_002771347.1| Holliday junction ATP-dependent DNA helicase [Brevibacillus brevis
           NBRC 100599]
 gi|254767414|sp|C0ZAN4|RUVB_BREBN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|226094401|dbj|BAH42843.1| Holliday junction ATP-dependent DNA helicase [Brevibacillus brevis
           NBRC 100599]
          Length = 332

 Score =  387 bits (995), Expect = e-106,   Method: Composition-based stats.
 Identities = 186/330 (56%), Positives = 239/330 (72%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD   + +    +EDA    LRPR L E+ GQ     NLK+FIEAAK R E+LDHVL  G
Sbjct: 1   MDSRIITTHMNWEEDAAELSLRPRYLNEYIGQQHVKENLKIFIEAAKMRKESLDHVLLYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTL+Q++A ELGVN R+TSGP I + GDLAA+LTNL++ DVLFIDEIHRL+  V
Sbjct: 61  PPGLGKTTLSQIIANELGVNIRTTSGPAIERPGDLAAILTNLQEGDVLFIDEIHRLNRSV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTR G+L+ PL+DRFG+  RL 
Sbjct: 121 EEVLYPAMEDFALDIIIGKGPSARSVRLDLPPFTLVGATTRAGMLSAPLRDRFGVVNRLE 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY + +L  IV R A +  + + +  A EIA RSRGTPR+A RLL+RVRDFA+V     I
Sbjct: 181 FYTVPELTFIVSRAADILQVVIREGGAEEIARRSRGTPRVANRLLKRVRDFAQVKGEGVI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T EIA  AL RL +D  G D +D + L  I   F GGPVG++TI+A + E    +ED+ E
Sbjct: 241 TTEIAKEALERLQVDACGLDHIDHKLLLAIIDRFDGGPVGLDTIAATIGEESQTVEDVCE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           PY++Q GF+QRTPRGR+L P A+QH G ++
Sbjct: 301 PYLMQIGFMQRTPRGRVLTPSAYQHFGREM 330


>gi|322616894|gb|EFY13802.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322618132|gb|EFY15024.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322625803|gb|EFY22622.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322626255|gb|EFY23065.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322632669|gb|EFY29414.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322639013|gb|EFY35706.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322640453|gb|EFY37106.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322644218|gb|EFY40763.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322649541|gb|EFY45973.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322655448|gb|EFY51756.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322660227|gb|EFY56465.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322662908|gb|EFY59115.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322668093|gb|EFY64252.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322674147|gb|EFY70241.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322675499|gb|EFY71573.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322683087|gb|EFY79103.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322686781|gb|EFY82759.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323195328|gb|EFZ80508.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323199220|gb|EFZ84315.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323210662|gb|EFZ95540.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323217460|gb|EGA02179.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323224439|gb|EGA08727.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323235924|gb|EGA20003.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323240494|gb|EGA24537.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323245386|gb|EGA29386.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323260267|gb|EGA43888.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323266858|gb|EGA50344.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323269064|gb|EGA52520.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 336

 Score =  387 bits (995), Expect = e-106,   Method: Composition-based stats.
 Identities = 195/334 (58%), Positives = 250/334 (74%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S   +  ED     +RP+ L E+ GQ +  S +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRLISAGATIAEDVADRAIRPKFLAEYVGQPQVRSQMEIFIQAAKLRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IV R A+  GL ++D+ A E+A R+RGTPRIA RLLRRVRDFAEV H  
Sbjct: 181 LEFYQVPDLQHIVGRSARHMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I+ EIA  AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 AISAEIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +EPY+IQQGF+QRTPRGR+    AW H GI  P 
Sbjct: 301 LEPYLIQQGFLQRTPRGRMATVRAWNHFGITPPE 334


>gi|311279239|ref|YP_003941470.1| Holliday junction DNA helicase RuvB [Enterobacter cloacae SCF1]
 gi|308748434|gb|ADO48186.1| Holliday junction DNA helicase RuvB [Enterobacter cloacae SCF1]
          Length = 336

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 196/334 (58%), Positives = 250/334 (74%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S   S  E+     +RP+ L E+ GQ +  S +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRLISAGSSTAEEVADRAIRPKLLAEYVGQPQVRSQMEIFIQAAKLRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IV R A+  GL +++E A E+A RSRGTPRIA RLLRRVRDFAEV H  
Sbjct: 181 LEFYQVPDLQHIVGRSARYMGLEMSEEGALEVARRSRGTPRIANRLLRRVRDFAEVRHDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           TI+  IA  AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 TISAHIAAEALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +EPY+IQQGF+QRTPRGR+    AW H GI  P 
Sbjct: 301 LEPYLIQQGFLQRTPRGRMATVRAWNHFGITPPQ 334


>gi|260598335|ref|YP_003210906.1| Holliday junction DNA helicase RuvB [Cronobacter turicensis z3032]
 gi|260217512|emb|CBA31689.1| Holliday junction ATP-dependent DNA helicase ruvB [Cronobacter
           turicensis z3032]
          Length = 336

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 192/334 (57%), Positives = 251/334 (75%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSR-NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L++  ++  E+     +RP+ L+E+ GQ +  S +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRLVAPGSIVAEEVADRAMRPKLLDEYIGQPQVRSQMEIFIQAAKLRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IV R A+  GL + DEA+ E+A RSRGTPRIA RLLRRVRDFAEV H  
Sbjct: 181 LEFYQVADLQHIVSRSARHMGLEMNDEASFEVAKRSRGTPRIANRLLRRVRDFAEVRHDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I + +A  AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 VINQHVASLALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +EP++IQQGF+QRTPRGR+    AW H GI  P 
Sbjct: 301 LEPFLIQQGFLQRTPRGRMATTRAWNHFGITPPQ 334


>gi|283785599|ref|YP_003365464.1| holliday junction ATP-dependent DNA helicase [Citrobacter rodentium
           ICC168]
 gi|282949053|emb|CBG88656.1| holliday junction ATP-dependent DNA helicase [Citrobacter rodentium
           ICC168]
          Length = 336

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 194/334 (58%), Positives = 252/334 (75%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S   +  E+     +RP+ L+E+ GQ +  S +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRLISAGATIAEEVADRAIRPKLLDEYIGQPQVRSQMEIFIQAAKLRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IV R A+  GL ++++ A E+A R+RGTPRIA RLLRRVRDFAEV H  
Sbjct: 181 LEFYQVPDLQHIVGRSARFMGLEMSEDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           TI+ EIA  AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 TISAEIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +EPY+IQQGF+QRTPRGR+    AW H GI  P 
Sbjct: 301 LEPYLIQQGFLQRTPRGRMATVRAWNHFGITPPD 334


>gi|222086987|ref|YP_002545521.1| Holliday junction DNA helicase RuvB [Agrobacterium radiobacter K84]
 gi|221724435|gb|ACM27591.1| Holliday junction DNA helicase RuvB [Agrobacterium radiobacter K84]
          Length = 341

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 251/327 (76%), Positives = 292/327 (89%), Gaps = 1/327 (0%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           ++S     ED D++ LRP++L+EFTGQ EA +NLKVFIEAAK R EALDHVLFVGPPGLG
Sbjct: 1   MISPEKRGEDLDVT-LRPQSLDEFTGQAEARANLKVFIEAAKGRGEALDHVLFVGPPGLG 59

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTTLAQ++A+ELGVNFRSTSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRL+  VEEILY
Sbjct: 60  KTTLAQIMAKELGVNFRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLNPAVEEILY 119

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           PAMEDFQLDL++GEGP+ARSVKI+L++FTL+AATTR+GLLT PL+DRFGIP+RL+FY +E
Sbjct: 120 PAMEDFQLDLIIGEGPAARSVKIDLAKFTLVAATTRLGLLTTPLRDRFGIPVRLSFYTVE 179

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +L+ IV+RGA+L GL +T+E A EIA R+RGTPRIAGRLLRRVRDFAEVA A+ +TREIA
Sbjct: 180 ELELIVRRGARLMGLGITEEGAREIARRARGTPRIAGRLLRRVRDFAEVAKAEAVTREIA 239

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           D AL RL +D +GFDQLD RYL MIA NFGGGPVGIETI+AGLSEPRDAIED+IEPYMIQ
Sbjct: 240 DEALTRLLVDNVGFDQLDKRYLNMIAVNFGGGPVGIETIAAGLSEPRDAIEDIIEPYMIQ 299

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           QGFIQRTPRGR+L  IAW+HLG+  P 
Sbjct: 300 QGFIQRTPRGRVLTAIAWKHLGLQPPK 326


>gi|119896892|ref|YP_932105.1| Holliday junction DNA helicase RuvB [Azoarcus sp. BH72]
 gi|166231461|sp|A1K313|RUVB_AZOSB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|119669305|emb|CAL93218.1| holliday junction DNA helicase [Azoarcus sp. BH72]
          Length = 352

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 198/331 (59%), Positives = 247/331 (74%), Gaps = 2/331 (0%)

Query: 5   EGLLSRNVS--QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           E L+S   +  QEDA    LRP+ L E+ GQ +    L++FI AAK R+EALDHVL  GP
Sbjct: 13  ERLISPQPADRQEDAVERALRPKRLAEYVGQAKIREQLEIFIHAAKKRSEALDHVLLFGP 72

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA +VA E+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VE
Sbjct: 73  PGLGKTTLAHIVAAEMGVNLRQTSGPVLERAGDLAALLTNLEPHDVLFIDEIHRLSPVVE 132

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILYPA+EDFQ+D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL F
Sbjct: 133 EILYPALEDFQIDIMIGEGPAARSVKLDLPPFTLVGATTRAGMLTNPLRDRFGIVSRLEF 192

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  ++L  IV R A+L  + + D+ A EIA R+RGTPRIA RLLRRVRD+AEV     IT
Sbjct: 193 YTPDELGFIVSRSARLLNVEIDDDGALEIARRARGTPRIANRLLRRVRDYAEVKAGGHIT 252

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           R +ADAAL  L +D +G D +D + L+ +   FGGGPVG++ ++A + E  D IED+IEP
Sbjct: 253 RAVADAALRMLDVDSLGLDLMDRKMLSAMLEKFGGGPVGLDNLAAAIGESTDTIEDVIEP 312

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           Y+IQQG++QRTPRGR+     WQH G+  P 
Sbjct: 313 YLIQQGYLQRTPRGRMATHSIWQHFGLAPPR 343


>gi|62180472|ref|YP_216889.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|167552472|ref|ZP_02346225.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|168234045|ref|ZP_02659103.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168241522|ref|ZP_02666454.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168462575|ref|ZP_02696506.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168820717|ref|ZP_02832717.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194443149|ref|YP_002041159.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194451535|ref|YP_002045947.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194468616|ref|ZP_03074600.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|224583601|ref|YP_002637399.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|238912046|ref|ZP_04655883.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|81309669|sp|Q57NA3|RUVB_SALCH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|238693526|sp|B4SVE4|RUVB_SALNS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|238693636|sp|B4T7Z2|RUVB_SALHS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|254767438|sp|C0Q2F5|RUVB_SALPC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|62128105|gb|AAX65808.1| Holliday junction helicase, subunit B [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|194401812|gb|ACF62034.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194409839|gb|ACF70058.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194454980|gb|EDX43819.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|195634281|gb|EDX52633.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|205322862|gb|EDZ10701.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205331956|gb|EDZ18720.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205339368|gb|EDZ26132.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205342660|gb|EDZ29424.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|224468128|gb|ACN45958.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|320085489|emb|CBY95270.1| Holliday junction ATP-dependent DNA helicase ruvB [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
 gi|322714947|gb|EFZ06518.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 336

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 195/334 (58%), Positives = 250/334 (74%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S   +  ED     +RP+ L E+ GQ +  S +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRLISAGATIAEDVADRAIRPKLLAEYVGQPQVRSQMEIFIQAAKLRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IV R A+  GL ++D+ A E+A R+RGTPRIA RLLRRVRDFAEV H  
Sbjct: 181 LEFYQVPDLQHIVGRSARHMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I+ EIA  AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 AISAEIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +EPY+IQQGF+QRTPRGR+    AW H GI  P 
Sbjct: 301 LEPYLIQQGFLQRTPRGRMATVRAWNHFGITPPE 334


>gi|153008544|ref|YP_001369759.1| Holliday junction DNA helicase RuvB [Ochrobactrum anthropi ATCC
           49188]
 gi|166231507|sp|A6WY76|RUVB_OCHA4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|151560432|gb|ABS13930.1| Holliday junction DNA helicase RuvB [Ochrobactrum anthropi ATCC
           49188]
          Length = 346

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 241/332 (72%), Positives = 284/332 (85%), Gaps = 2/332 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M DR  L+  +   ++   + LRP+TL++F GQ  A +NLKVFIEAAK R EALDHVLFV
Sbjct: 1   MSDRNPLIDADRRVDE--DNTLRPQTLDDFVGQAAARANLKVFIEAAKVRGEALDHVLFV 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++A+ELGVNFRSTSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRLS  
Sbjct: 59  GPPGLGKTTLAQIMAKELGVNFRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSPA 118

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILYPAMEDFQLDL++GEGP+ARSVKI+L++FTL+AATTR+GLLT PL+DRFGIP RL
Sbjct: 119 VEEILYPAMEDFQLDLIIGEGPAARSVKIDLAKFTLVAATTRLGLLTTPLRDRFGIPTRL 178

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           NFY +E+L+ IV+RGA++  + ++ + A E+A RSRGTPRIAGRLLRRVRDFA VA A  
Sbjct: 179 NFYTVEELEYIVRRGARIMQMGISPDGALEVARRSRGTPRIAGRLLRRVRDFALVAGADV 238

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I R+IAD AL RL +D  G DQLD RYL +IARNFGGGPVGIETI+AGLSEPRDAIED+I
Sbjct: 239 IDRKIADEALSRLEVDNRGLDQLDRRYLNIIARNFGGGPVGIETIAAGLSEPRDAIEDII 298

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EPY+IQQGF+QRTPRGR+L  +AWQHLG+  P
Sbjct: 299 EPYLIQQGFLQRTPRGRVLTAVAWQHLGLPAP 330


>gi|16760844|ref|NP_456461.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|16765236|ref|NP_460851.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|29141464|ref|NP_804806.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|56413187|ref|YP_150262.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|161613552|ref|YP_001587517.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167994195|ref|ZP_02575287.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168238524|ref|ZP_02663582.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168259833|ref|ZP_02681806.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|194735485|ref|YP_002114929.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197247607|ref|YP_002146129.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197262734|ref|ZP_03162808.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197362113|ref|YP_002141750.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|198242097|ref|YP_002215192.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|200390795|ref|ZP_03217406.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|213163230|ref|ZP_03348940.1| Holliday junction DNA helicase B [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213426406|ref|ZP_03359156.1| Holliday junction DNA helicase B [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213649640|ref|ZP_03379693.1| Holliday junction DNA helicase B [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|54039578|sp|P66756|RUVB_SALTI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|54042206|sp|P66755|RUVB_SALTY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|81821475|sp|Q5PIA7|RUVB_SALPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|189046046|sp|A9MUX4|RUVB_SALPB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|226698783|sp|B5F3J7|RUVB_SALA4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|226698784|sp|B5FSN8|RUVB_SALDC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|238689768|sp|B4TYR7|RUVB_SALSV RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|238690746|sp|B5BH61|RUVB_SALPK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|25299833|pir||AB0743 Holliday junction DNA helicase [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16420430|gb|AAL20810.1| Holliday junction helicase, subunit B [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|16503141|emb|CAD05645.1| Holliday junction DNA helicase [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29137091|gb|AAO68655.1| Holliday junction DNA helicase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56127444|gb|AAV76950.1| Holliday junction DNA helicase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|161362916|gb|ABX66684.1| hypothetical protein SPAB_01272 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194710987|gb|ACF90208.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197093590|emb|CAR59053.1| Holliday junction DNA helicase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197211310|gb|ACH48707.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197240989|gb|EDY23609.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197288639|gb|EDY28014.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|197936613|gb|ACH73946.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199603240|gb|EDZ01786.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205327888|gb|EDZ14652.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205350900|gb|EDZ37531.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|267993876|gb|ACY88761.1| Holliday junction DNA helicase B [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|312912888|dbj|BAJ36862.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321224537|gb|EFX49600.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|323130178|gb|ADX17608.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|326622941|gb|EGE29286.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
 gi|326627452|gb|EGE33795.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
 gi|332988788|gb|AEF07771.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 336

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 195/334 (58%), Positives = 250/334 (74%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S   +  ED     +RP+ L E+ GQ +  S +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRLISAGATIAEDVADRAIRPKLLAEYVGQPQVRSQMEIFIQAAKRRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IV R A+  GL ++D+ A E+A R+RGTPRIA RLLRRVRDFAEV H  
Sbjct: 181 LEFYQVPDLQHIVGRSARHMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I+ EIA  AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 AISAEIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +EPY+IQQGF+QRTPRGR+    AW H GI  P 
Sbjct: 301 LEPYLIQQGFLQRTPRGRMATVRAWNHFGITPPE 334


>gi|253574941|ref|ZP_04852281.1| Holliday junction DNA helicase RuvB [Paenibacillus sp. oral taxon
           786 str. D14]
 gi|251845987|gb|EES73995.1| Holliday junction DNA helicase RuvB [Paenibacillus sp. oral taxon
           786 str. D14]
          Length = 335

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 196/334 (58%), Positives = 251/334 (75%), Gaps = 2/334 (0%)

Query: 1   MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           MM+ + ++S N+  ED  + L LRPR L E+ GQ +   NLK++IEAAK R EALDHVL 
Sbjct: 1   MME-DRIISANLMLEDQAVELSLRPRYLAEYIGQNQIKENLKIYIEAAKMRKEALDHVLL 59

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A ELGVN R+TSGP I + GDLAALLTNL++ DVLFIDEIHRL  
Sbjct: 60  YGPPGLGKTTLANIIANELGVNLRTTSGPAIERPGDLAALLTNLQEGDVLFIDEIHRLHR 119

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEE+LYPAMEDF LD+M+G+GPSARSV+++L  FTL+ ATTR GLL+ PL+DRFG+  R
Sbjct: 120 TVEEVLYPAMEDFALDIMIGKGPSARSVRLDLPPFTLVGATTRAGLLSAPLRDRFGVVSR 179

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY I++L  IV RGA + G+ +  +AA EIA+RSRGTPRIA RLL+RVRD+A+V    
Sbjct: 180 LEFYNIDELSYIVSRGADIFGIEMIGDAATEIALRSRGTPRIANRLLKRVRDYAQVRGDG 239

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT EIA  AL  L +D MG D +D + L  +  +F GGPVG++TI+A + E    IED+
Sbjct: 240 MITTEIAKEALQMLQVDPMGLDLIDHKMLRAMITSFRGGPVGLDTIAATIGEESQTIEDV 299

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            EPY++Q GF+QRTPRGR++ P A+QHLG+ +P 
Sbjct: 300 YEPYLLQIGFLQRTPRGRVVTPAAYQHLGLPMPE 333


>gi|192359396|ref|YP_001981527.1| Holliday junction DNA helicase RuvB [Cellvibrio japonicus Ueda107]
 gi|238692419|sp|B3PB59|RUVB_CELJU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|190685561|gb|ACE83239.1| Holliday junction DNA helicase RuvB [Cellvibrio japonicus Ueda107]
          Length = 346

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 197/335 (58%), Positives = 250/335 (74%), Gaps = 1/335 (0%)

Query: 1   MMDREGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L++    + ED     +RP+ L ++ GQ      +++FI AAK R EALDH L 
Sbjct: 1   MIETDRLIAPTAKEREDQLDRAVRPKVLADYVGQPAVREQMEIFICAAKKRREALDHTLV 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A E+GV+ +STSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIIANEMGVSLKSTSGPVLEKAGDLAAMLTNLEAGDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPAMEDFQLD+M+GEGP+ARS+K++L  FTL+ ATTR GLLT+PL+DRFGI  R
Sbjct: 121 VVEEILYPAMEDFQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGLLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY ++DL  IV R A L G+++ +  A EIA RSRGTPRIA RLLRRVRDFAEV    
Sbjct: 181 LEFYNVKDLTHIVARSAALLGVSMEELGAAEIAKRSRGTPRIANRLLRRVRDFAEVKGDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT E+AD AL  L +D+ GFD +D R L  +  NF GGPVG+E+++A +SE R  IED+
Sbjct: 241 RITSELADKALNMLNVDERGFDHMDRRLLLAMINNFDGGPVGVESLAAAISEDRGTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           IEPY+IQQGF+ RTPRGR+L   A+ H G+ +P R
Sbjct: 301 IEPYLIQQGFMARTPRGRVLTTNAYLHFGLSMPKR 335


>gi|291612985|ref|YP_003523142.1| Holliday junction DNA helicase RuvB [Sideroxydans lithotrophicus
           ES-1]
 gi|291583097|gb|ADE10755.1| Holliday junction DNA helicase RuvB [Sideroxydans lithotrophicus
           ES-1]
          Length = 351

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 194/330 (58%), Positives = 245/330 (74%), Gaps = 2/330 (0%)

Query: 6   GLLS--RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
            ++S      QE+A    LRP+ L+E+ GQ +    L++FI+AAK R E LDHVL  GPP
Sbjct: 12  RIISAAPASPQEEALDRALRPKQLDEYVGQEKIRGQLEIFIQAAKKRKEPLDHVLLFGPP 71

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLAQ++ARE+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VEE
Sbjct: 72  GLGKTTLAQIIAREMGVNIRHTSGPVLERAGDLAALLTNLEPHDVLFIDEIHRLSPVVEE 131

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILYPA+ED+Q+D+M+GEGP ARSVKI+L  FTL+ ATTR G+LTNPL+DRFGI  RL FY
Sbjct: 132 ILYPALEDYQIDIMIGEGPGARSVKIDLPPFTLVGATTRAGMLTNPLRDRFGIVARLEFY 191

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
             E+L+ IV R + L  L ++ + A EIA RSRGTPRIA RLLRRVRD+A+V      TR
Sbjct: 192 TPEELQRIVTRSSGLLELPISPDGALEIARRSRGTPRIANRLLRRVRDYADVRAEGNATR 251

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           E+ADAAL  L +D  G D +D + L  +   F GGPVG++ ++A + E RD IED++EPY
Sbjct: 252 EVADAALTMLDVDSRGLDVMDRKLLQTVIEKFMGGPVGVDNLAAAIGEERDTIEDVLEPY 311

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +IQQG++QRTPRGR+    A+QH G+  P 
Sbjct: 312 LIQQGYLQRTPRGRMATANAYQHFGLIQPR 341


>gi|90580118|ref|ZP_01235926.1| Holliday junction DNA helicase RuvB [Vibrio angustum S14]
 gi|90439003|gb|EAS64186.1| Holliday junction DNA helicase RuvB [Vibrio angustum S14]
          Length = 339

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 192/336 (57%), Positives = 252/336 (75%), Gaps = 3/336 (0%)

Query: 1   MMDREGLLSRNVS---QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M++ + L+S N     ++D     +RP+ L+++ GQ      +++FI+AAK R EALDH+
Sbjct: 1   MIEADRLVSSNFETTREDDIIDRAIRPKLLDDYQGQDHVRDQMEIFIKAAKMRDEALDHL 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTLA +VA E+GV+ R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRL
Sbjct: 61  LIFGPPGLGKTTLANIVANEMGVSIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           S  VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI 
Sbjct: 121 SPQVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIT 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            RL +Y++EDLK IV R AK  GL++ +  A E+AMR+RGTPRIA RLLRRVRD+AEV  
Sbjct: 181 QRLEYYKVEDLKDIVGRSAKCLGLSMEEGGAMEMAMRARGTPRIANRLLRRVRDYAEVKG 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
              I  +IA+ AL  L +D  GFD +D + L  I   F GGPVG++ ++A + E +D IE
Sbjct: 241 NGHICPDIANKALDMLDVDSSGFDYMDRKLLLAIIEKFMGGPVGLDNLAAAIGEEKDTIE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           D++EPY+IQQG++QRTPRGR+    A+ H G+D+P 
Sbjct: 301 DVLEPYLIQQGYLQRTPRGRIATHRAYLHFGLDLPK 336


>gi|161502990|ref|YP_001570102.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|189046045|sp|A9MND7|RUVB_SALAR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|160864337|gb|ABX20960.1| hypothetical protein SARI_01052 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 336

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 194/334 (58%), Positives = 250/334 (74%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S   +  E+     +RP+ L E+ GQ +  S +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRLISAGATIAEEVADRAIRPKLLAEYVGQPQVRSQMEIFIQAAKLRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IV R A+  GL ++D+ A E+A R+RGTPRIA RLLRRVRDFAEV H  
Sbjct: 181 LEFYQVPDLQHIVGRSARHMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I+ EIA  AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 AISAEIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +EPY+IQQGF+QRTPRGR+    AW H GI  P 
Sbjct: 301 LEPYLIQQGFLQRTPRGRMATVRAWNHFGITPPE 334


>gi|330445533|ref|ZP_08309185.1| Holliday junction DNA helicase RuvB [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328489724|dbj|GAA03682.1| Holliday junction DNA helicase RuvB [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 339

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 191/336 (56%), Positives = 251/336 (74%), Gaps = 3/336 (0%)

Query: 1   MMDREGLLSRNVS---QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M++ + L+S N     ++D     +RP+ L+++ GQ      +++FI+AAK R EALDH+
Sbjct: 1   MIEADRLVSGNFETTREDDIIDRAIRPKLLDDYQGQDHVRDQMEIFIKAAKLRDEALDHL 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTLA +VA E+GV+ R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRL
Sbjct: 61  LIFGPPGLGKTTLANIVANEMGVSIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           S  VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI 
Sbjct: 121 SPQVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIT 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            RL +Y++EDLK IV R A   GL++ +  A E+AMR+RGTPRIA RLLRRVRD+AEV  
Sbjct: 181 QRLEYYKVEDLKDIVSRSANCLGLSMEEAGALEVAMRARGTPRIANRLLRRVRDYAEVKG 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
              I  +IA+ AL  L +D  GFD +D + L  I   F GGPVG++ ++A + E +D IE
Sbjct: 241 NGHICPDIANKALDMLDVDSSGFDYMDRKLLLAIIEKFMGGPVGLDNLAAAIGEEKDTIE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           D++EPY+IQQG++QRTPRGR+    A+ H G+D+P 
Sbjct: 301 DVLEPYLIQQGYLQRTPRGRIATHRAYLHFGLDLPE 336


>gi|254719705|ref|ZP_05181516.1| Holliday junction DNA helicase RuvB [Brucella sp. 83/13]
 gi|265984720|ref|ZP_06097455.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella sp.
           83/13]
 gi|306837836|ref|ZP_07470698.1| Holliday junction DNA helicase RuvB [Brucella sp. NF 2653]
 gi|264663312|gb|EEZ33573.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella sp.
           83/13]
 gi|306407075|gb|EFM63292.1| Holliday junction DNA helicase RuvB [Brucella sp. NF 2653]
          Length = 346

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 241/332 (72%), Positives = 284/332 (85%), Gaps = 2/332 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M DR  L+  +   ++   + LRP+TL++F GQ  A +NLKVFIEAAK R EALDHVLFV
Sbjct: 1   MSDRNPLIDADRCADE--DNTLRPQTLDDFVGQAAARANLKVFIEAAKVRGEALDHVLFV 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++A+ELGVNFRSTSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRLS  
Sbjct: 59  GPPGLGKTTLAQIMAKELGVNFRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSPA 118

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILYPAMEDFQLDL++GEGP+ARSVKI+L++FTL+AATTR+GLLT PL+DRFGIP+RL
Sbjct: 119 VEEILYPAMEDFQLDLIIGEGPAARSVKIDLAKFTLVAATTRLGLLTTPLRDRFGIPVRL 178

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           NFY +E+L+ IV+RGA++  + ++ + A E+A RSRGTPRIAGRLLRRVRDFA VA A  
Sbjct: 179 NFYTVEELEYIVRRGARIMQMGISSDGAREVARRSRGTPRIAGRLLRRVRDFALVAGADI 238

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I R IAD AL RL +D  G DQLD RYL +IARNFGGGPVGIETI+AGLSEPRDAIED+I
Sbjct: 239 IDRRIADEALSRLEVDNRGLDQLDRRYLNIIARNFGGGPVGIETIAAGLSEPRDAIEDII 298

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EPY+IQQGF+QRTPRGR+L  +AWQHLG+  P
Sbjct: 299 EPYLIQQGFLQRTPRGRVLTAVAWQHLGLPAP 330


>gi|204930997|ref|ZP_03221823.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|204320041|gb|EDZ05246.1| holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
          Length = 336

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 194/334 (58%), Positives = 250/334 (74%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S   +  ED     +RP+ L E+ GQ +  S +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRLISAGATIAEDVADRAIRPKFLAEYVGQPQVRSQMEIFIQAAKLRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IV R A+  GL ++D+ A E+A R+RGTPRIA RLLRRVRDFAEV H  
Sbjct: 181 LEFYQVPDLQHIVGRSARHMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I+ EIA  AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 AISAEIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +EPY+IQ+GF+QRTPRGR+    AW H GI  P 
Sbjct: 301 LEPYLIQRGFLQRTPRGRMATVRAWNHFGITPPE 334


>gi|118588332|ref|ZP_01545741.1| Holliday junction DNA helicase B [Stappia aggregata IAM 12614]
 gi|118439038|gb|EAV45670.1| Holliday junction DNA helicase B [Stappia aggregata IAM 12614]
          Length = 346

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 230/334 (68%), Positives = 283/334 (84%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D   +++  +  ++ D S +RP+ L++F GQ +A +NLKVFI AAKAR EALDHVLFV
Sbjct: 1   MSDDTRIVTPEIRGDEID-STMRPQVLDDFVGQAQARANLKVFIGAAKARGEALDHVLFV 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++ARELGVNFR+TSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRL+  
Sbjct: 60  GPPGLGKTTLAQIMARELGVNFRATSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLNPA 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDFQLDL++GEGP+ARSVKI+L++FTL+AATTR+GLLT PL+DRFGIP+RL
Sbjct: 120 VEEVLYPAMEDFQLDLIIGEGPAARSVKIDLAKFTLVAATTRLGLLTTPLRDRFGIPVRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY + +L+ IV+RGA + G+ + +E A EIA RSRGTPRIAGRLLRRVRDFA VA  + 
Sbjct: 180 QFYTVPELEHIVKRGASILGIGMVEEGAREIAKRSRGTPRIAGRLLRRVRDFAIVAGVER 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           + RE+AD ALL+L +D  G D LD RYL+ IA NFGGGPVGIETI+A LSEPRDAIE+++
Sbjct: 240 VDRELADRALLQLEVDSAGLDSLDRRYLSQIAVNFGGGPVGIETIAAALSEPRDAIEEIV 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           EPY+IQ GF+QRTPRGR+L P+A++HLG+  P R
Sbjct: 300 EPYLIQNGFLQRTPRGRILTPMAFEHLGLAAPSR 333


>gi|74318229|ref|YP_315969.1| Holliday junction DNA helicase RuvB [Thiobacillus denitrificans
           ATCC 25259]
 gi|97190415|sp|Q3SGT3|RUVB_THIDA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|74057724|gb|AAZ98164.1| Holliday junction DNA helicase RuvB [Thiobacillus denitrificans
           ATCC 25259]
          Length = 341

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 196/334 (58%), Positives = 250/334 (74%), Gaps = 2/334 (0%)

Query: 1   MMDREGLLSRNV--SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M++ + L+       QE+     LRPRTL E+ GQ +A   L++FI AA+ R+EALDHVL
Sbjct: 1   MIETDRLIVPTAVGPQEEQIERALRPRTLAEYVGQAKAREQLEIFIHAARKRSEALDHVL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA ++ARE+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS
Sbjct: 61  LFGPPGLGKTTLAHIIAREMGVNLRQTSGPVLERAGDLAALLTNLEPHDVLFIDEIHRLS 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            +VEE+LYPA+EDFQ+D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  
Sbjct: 121 PVVEEVLYPALEDFQIDIMIGEGPAARSVKLDLPPFTLVGATTRAGMLTNPLRDRFGIVA 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           RL FY  E+L  IV R A L  + + +  A EIA RSRGTPRIA RLLRRVRD+AEV   
Sbjct: 181 RLEFYSAEELGYIVHRSAGLLQMNLDEAGALEIARRSRGTPRIANRLLRRVRDYAEVKAG 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
              T  +ADAAL+ L +D+ G D +D + L  +   F GGPVG++ ++A + E RD IED
Sbjct: 241 GEATGAVADAALVMLDVDRAGLDVMDRKLLGAVVEKFMGGPVGLDNLAAAIGEERDTIED 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++EPY+IQQG++QRTPRGR+  P+A++HLGI  P
Sbjct: 301 VLEPYLIQQGYLQRTPRGRVATPLAYRHLGIATP 334


>gi|222109716|ref|YP_002551980.1| holliday junction DNA helicase ruvb [Acidovorax ebreus TPSY]
 gi|221729160|gb|ACM31980.1| Holliday junction DNA helicase RuvB [Acidovorax ebreus TPSY]
          Length = 356

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 195/332 (58%), Positives = 243/332 (73%), Gaps = 2/332 (0%)

Query: 4   REGLLS--RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           RE ++S     SQE+A    LRP+ L+E+ GQ +A   L++FI AAK R EALDHVL  G
Sbjct: 16  RERVVSAAPASSQEEALERALRPKLLQEYVGQAKAREQLEIFIGAAKKRGEALDHVLLFG 75

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTL+ ++A ELGVN R TSGPV+ K  DLAALLTNLE  DVLFIDEIHRLS +V
Sbjct: 76  PPGLGKTTLSHIIATELGVNLRQTSGPVLEKPKDLAALLTNLERNDVLFIDEIHRLSPVV 135

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILYPA+ED+Q+D+M+GEGP+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  RL 
Sbjct: 136 EEILYPALEDYQIDIMIGEGPAARSIKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLE 195

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY  E+L  IV R A L G  +  E   EIA RSRGTPRIA RLLRRVRD+AEV  +  I
Sbjct: 196 FYTPEELARIVMRSAGLLGAPIDAEGGMEIARRSRGTPRIANRLLRRVRDYAEVKGSGHI 255

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T +IA+ AL  L +D  GFD +D + L  +   F GGPVG++ I+A + E    IED+IE
Sbjct: 256 TLDIANRALTMLDVDPQGFDVMDRKLLEAVVHRFDGGPVGLDNIAASIGEESGTIEDVIE 315

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           PY+IQQG++QRTPRGR+    A++HLG+  P 
Sbjct: 316 PYLIQQGYLQRTPRGRVATLAAYRHLGVAPPR 347


>gi|89075788|ref|ZP_01162176.1| Holliday junction DNA helicase RuvB [Photobacterium sp. SKA34]
 gi|89048520|gb|EAR54095.1| Holliday junction DNA helicase RuvB [Photobacterium sp. SKA34]
          Length = 339

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 192/336 (57%), Positives = 252/336 (75%), Gaps = 3/336 (0%)

Query: 1   MMDREGLLSRNVS---QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M++ + L+S N     ++D     +RP+ L+++ GQ      +++FI+AAK R EALDH+
Sbjct: 1   MIEADRLVSGNFETTREDDIIDRAIRPKLLDDYQGQDHVRDQMEIFIKAAKMRDEALDHL 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTLA +VA E+GV+ R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRL
Sbjct: 61  LIFGPPGLGKTTLANIVANEMGVSIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           S  VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI 
Sbjct: 121 SPQVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIT 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            RL +Y++EDLK IV R AK  GL++ +  A E+AMR+RGTPRIA RLLRRVRD+AEV  
Sbjct: 181 QRLEYYKVEDLKDIVGRSAKCLGLSMEEGGAMEMAMRARGTPRIANRLLRRVRDYAEVKG 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
              I  +IA+ AL  L +D  GFD +D + L  I   F GGPVG++ ++A + E +D IE
Sbjct: 241 NGHICPDIANKALDMLDVDSSGFDYMDRKLLLAIIEKFMGGPVGLDNLAAAIGEEKDTIE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           D++EPY+IQQG++QRTPRGR+    A+ H G+D+P 
Sbjct: 301 DVLEPYLIQQGYLQRTPRGRIATHRAYLHFGLDLPE 336


>gi|164687537|ref|ZP_02211565.1| hypothetical protein CLOBAR_01178 [Clostridium bartlettii DSM
           16795]
 gi|164603311|gb|EDQ96776.1| hypothetical protein CLOBAR_01178 [Clostridium bartlettii DSM
           16795]
          Length = 338

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 181/335 (54%), Positives = 244/335 (72%), Gaps = 1/335 (0%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           + D   L+S ++  ED D    LRP+ L ++ GQ +    L++FIEAAK+R E LDHVL 
Sbjct: 4   LDDENRLISSSMKVEDNDTEVSLRPKNLSDYLGQEKVKEQLEIFIEAAKSRNEPLDHVLL 63

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A E+GVN R TSGP I +AGDLAALLTNLE+ DVLFIDEIHR++ 
Sbjct: 64  YGPPGLGKTTLASIIANEMGVNLRITSGPAIERAGDLAALLTNLEENDVLFIDEIHRINR 123

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEE+LYPAMED+ +D+++G+GPSARS++++L +FTLI ATT+ G+LTNPL+DRFG+  +
Sbjct: 124 SVEEVLYPAMEDYCIDIIIGKGPSARSIRLDLPKFTLIGATTKAGMLTNPLRDRFGVICK 183

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L++Y +++L  I  R A L    +    A EIA RSRGTPRIA RLL+RVRD+A+V    
Sbjct: 184 LDYYTVDELAQISMRSANLLDADINLNGATEIARRSRGTPRIANRLLKRVRDYAQVKADG 243

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT E+A  AL  L +D +G D +D + L  I   FGGGPVG++T++A + E R+ IED+
Sbjct: 244 NITDEVASNALELLGVDSLGLDDVDEKLLLTIIHKFGGGPVGLDTLAASIGEDRNTIEDV 303

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
            EPY++Q GFI R PRGR+ MP A++HL I+ P +
Sbjct: 304 YEPYLLQLGFINRGPRGRIAMPKAYEHLNIEYPKK 338


>gi|241766522|ref|ZP_04764386.1| Holliday junction DNA helicase RuvB [Acidovorax delafieldii 2AN]
 gi|241363255|gb|EER58814.1| Holliday junction DNA helicase RuvB [Acidovorax delafieldii 2AN]
          Length = 352

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 191/325 (58%), Positives = 240/325 (73%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           +    QE+A    LRP+ L+E+ GQ +A   L++FI AA+ R EALDHVL  GPPGLGKT
Sbjct: 20  APASPQEEAIERALRPKLLQEYVGQAKAREQLEIFIGAARKRGEALDHVLLFGPPGLGKT 79

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           TL+ ++A ELGVN R TSGPV+ K  DLAALLTNLE  DVLFIDEIHRLS +VEEILYPA
Sbjct: 80  TLSHIIAAELGVNLRQTSGPVLEKPKDLAALLTNLEKNDVLFIDEIHRLSPVVEEILYPA 139

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +ED+Q+D+M+GEGP+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  E+L
Sbjct: 140 LEDYQIDIMIGEGPAARSIKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTPEEL 199

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             IV R A L G  + DE   E+A RSRGTPRIA RLLRRVRD+AEV  +  ITR+IA+ 
Sbjct: 200 ARIVTRSAGLLGTPMDDEGGFELARRSRGTPRIANRLLRRVRDYAEVKGSGRITRDIANR 259

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL  L +D  GFD +D + L  +   F GGPVG++ I+A + E    IED+IEPY+IQQG
Sbjct: 260 ALAMLDVDPQGFDVMDRKLLEALIHRFDGGPVGLDNIAASIGEEAGTIEDVIEPYLIQQG 319

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIPH 333
           ++QRTPRGR+    A++HLG+  P 
Sbjct: 320 YLQRTPRGRIATLAAYRHLGVTPPQ 344


>gi|149927725|ref|ZP_01915977.1| Holliday junction DNA helicase B [Limnobacter sp. MED105]
 gi|149823551|gb|EDM82781.1| Holliday junction DNA helicase B [Limnobacter sp. MED105]
          Length = 351

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 195/334 (58%), Positives = 243/334 (72%), Gaps = 2/334 (0%)

Query: 1   MMDREGLLSRN--VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M++ + L+S       E+A    LRP+ L+E+ GQ +    L +FI AA+AR EALDHVL
Sbjct: 1   MIEPDRLISPTKTTPAEEAFERALRPKHLDEYVGQQKIRDQLDIFIAAARARNEALDHVL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA ++ARE+GVN R TSGPV+ + GDLAALLTNLE  DVLFIDEIHRLS
Sbjct: 61  LFGPPGLGKTTLAHILAREMGVNLRQTSGPVLERPGDLAALLTNLEANDVLFIDEIHRLS 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            +VEEILYPA+ED+Q+D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  
Sbjct: 121 PVVEEILYPALEDYQIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVS 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           RL FY  E+L  IV R A L           EIA RSRGTPRIA RLLRRVRD+A+V   
Sbjct: 181 RLEFYTPEELSRIVARSANLLDTPAEASGCLEIARRSRGTPRIANRLLRRVRDYAQVKAD 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             IT E+ADAAL  L +DK+G D +D R L  I   FGGGPVG+E+++A + E +D IED
Sbjct: 241 GIITAEVADAALTMLDVDKVGLDPMDRRLLETIIHKFGGGPVGLESVAAAIGEEKDTIED 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++EPY+IQQG+IQRTPRGR+     + H G+  P
Sbjct: 301 VLEPYLIQQGYIQRTPRGRIATLNTYAHFGLTAP 334


>gi|332653062|ref|ZP_08418807.1| holliday junction DNA helicase RuvB [Ruminococcaceae bacterium D16]
 gi|332518208|gb|EGJ47811.1| holliday junction DNA helicase RuvB [Ruminococcaceae bacterium D16]
          Length = 355

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 185/329 (56%), Positives = 247/329 (75%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
            E L++ ++++ED     LRP+TL E+ GQ +A  NL+VFI+AAK R E LDHVL  GPP
Sbjct: 16  SEPLVTTSLTREDEGEYSLRPKTLREYIGQEKAKGNLEVFIQAAKMRNEPLDHVLLHGPP 75

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTL+ ++A E+GVN R TSGP I KAGDLAALLTNL + D+LF+DEIHRL+  VEE
Sbjct: 76  GLGKTTLSGIIANEMGVNVRITSGPAIEKAGDLAALLTNLNENDILFVDEIHRLNRSVEE 135

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LYPAMEDF +D+++G+GPSA S++++L +FTLI ATTR G L+ PL+DRFG+ +RL  Y
Sbjct: 136 VLYPAMEDFAIDIIIGKGPSANSIRLDLPKFTLIGATTRAGQLSAPLRDRFGVTLRLELY 195

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
             E+L  IV+R A + G+ + D+ A EIA RSRGTPRIA R+LRRVRDFA+V     IT+
Sbjct: 196 TPEELALIVKRSAGILGVPIEDDGAMEIARRSRGTPRIANRMLRRVRDFAQVRAGGVITK 255

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           ++AD AL  L ID +G D +D R L  I  N+ GGPVG+ET++A ++E    +ED+ EPY
Sbjct: 256 KVADEALTALEIDHLGLDSIDHRMLRSIIENYRGGPVGLETLAATINEEAVTLEDVYEPY 315

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++Q GF+ RTPRGR + P A+QHLG+ +P
Sbjct: 316 LMQLGFLTRTPRGRCVTPKAYQHLGLSVP 344


>gi|226939020|ref|YP_002794091.1| Holliday junction DNA helicase RuvB [Laribacter hongkongensis
           HLHK9]
 gi|254767429|sp|C1D9W9|RUVB_LARHH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|226713944|gb|ACO73082.1| RuvB [Laribacter hongkongensis HLHK9]
          Length = 345

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 198/332 (59%), Positives = 248/332 (74%), Gaps = 2/332 (0%)

Query: 5   EGLLSRNV--SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
             L+++    SQE+A    LRP+ L+++ GQ +A   L++FIEAAK R EALDHVL  GP
Sbjct: 13  RRLVTQQPLSSQEEALERALRPKALDDYVGQKKAREQLEIFIEAAKKRGEALDHVLLFGP 72

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA +++RELGVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VE
Sbjct: 73  PGLGKTTLAHIISRELGVNLRQTSGPVLERAGDLAALLTNLEPHDVLFIDEIHRLSPVVE 132

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILYPA+ED+Q+D+M+GEGP+ARSVKI+L  FTL+ ATTR G+LTNPL+DRFGI  RL F
Sbjct: 133 EILYPALEDYQIDIMIGEGPAARSVKIDLPPFTLVGATTRAGMLTNPLRDRFGIVARLEF 192

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  E+L  IV+R A L  + + +E A E+A RSRGTPRIA RLLRRVRDFAEV     +T
Sbjct: 193 YTPEELTRIVRRSAGLLEVQLGEEGAFEVARRSRGTPRIANRLLRRVRDFAEVRADGVVT 252

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             +ADAAL  L +D  G D +D + L  +   FGGGPVG++ ++A + E  D IED+IEP
Sbjct: 253 AAVADAALSMLDVDPAGLDVMDRKLLAAVLEKFGGGPVGLDNVAAAIGESTDTIEDVIEP 312

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           Y+IQQG++QRTPRGR+   +AW H G   P R
Sbjct: 313 YLIQQGYLQRTPRGRMATALAWTHFGFVPPER 344


>gi|187931663|ref|YP_001891647.1| Holliday junction DNA helicase RuvB [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|238691563|sp|B2SGL0|RUVB_FRATM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|187712572|gb|ACD30869.1| holliday junction DNA helicase RuvB [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 348

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 197/336 (58%), Positives = 250/336 (74%), Gaps = 3/336 (0%)

Query: 1   MMDREGLLSRNVSQ---EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M++ + ++S N +Q   E+     +RP+TL E+ GQ      +++FI+AAKAR +ALDH 
Sbjct: 1   MIETDRIISANTAQTNDENVIDKAIRPKTLAEYEGQPAVREQMEIFIQAAKARKDALDHT 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTL+ ++A E+GV  + TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRL
Sbjct: 61  LIFGPPGLGKTTLSNIIANEMGVELKQTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           S +VEEILYPAMED+QLD+M+GEGP+ARS+KI+L  FTL+ ATTR GLLT+PL+DRFGI 
Sbjct: 121 SPVVEEILYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLVGATTRAGLLTSPLRDRFGII 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            RL FY I+DL  IV R AKL  L +T + A EIA RSRGTPRIA RLLRRVRD+A+V  
Sbjct: 181 QRLEFYSIDDLSKIVYRSAKLLNLDITTDGAMEIAKRSRGTPRIANRLLRRVRDYAQVKG 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
           +  I  EI D AL  L +D +GFD +D RYL  +   F GGPVG++T+SA LSE +  IE
Sbjct: 241 SGVICFEIVDKALSMLKVDPVGFDHMDHRYLLTLMEKFAGGPVGLDTMSAALSEEKGTIE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           D+IEPY+IQQG+I RT RGR+   +A+ H  + IP 
Sbjct: 301 DVIEPYLIQQGYIMRTARGRIATLLAYNHFKLKIPD 336


>gi|27376648|ref|NP_768177.1| Holliday junction DNA helicase RuvB [Bradyrhizobium japonicum USDA
           110]
 gi|44888479|sp|Q89U80|RUVB_BRAJA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|27349789|dbj|BAC46802.1| holliday junction DNA helicase [Bradyrhizobium japonicum USDA 110]
          Length = 351

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 228/336 (67%), Positives = 275/336 (81%), Gaps = 2/336 (0%)

Query: 1   MMD--REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M D     ++S     +D   + LRP++L +F GQ +A  NL +FIEAA+ R EALDHVL
Sbjct: 1   MSDPKANRMVSPERRSDDVGDTALRPQSLSDFVGQQQARKNLSIFIEAARKRGEALDHVL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
           FVGPPGLGKTTLAQ+VA+ELGV FR+TSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRLS
Sbjct: 61  FVGPPGLGKTTLAQIVAKELGVGFRATSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLS 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
             VEE+LYPAMEDFQLDL++GEGP+ARSVKI LS+FTL+ ATTR GLLTNPL+DRFGIP+
Sbjct: 121 PAVEEVLYPAMEDFQLDLIIGEGPAARSVKIELSKFTLVGATTRAGLLTNPLRDRFGIPV 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           RLNFY IE+L++IV RGA++  + ++ + A EIA R+RGTPRIAGRLLRRVRDFA  A A
Sbjct: 181 RLNFYTIEELESIVSRGARVLNVGMSADGANEIARRARGTPRIAGRLLRRVRDFASAADA 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
            TI R+IAD AL  L +D  G D +D RYLT IA N+GGGPVG+ET++A LSEPRDAIED
Sbjct: 241 DTIDRKIADHALSALEVDAAGLDAMDRRYLTTIAMNYGGGPVGVETMAAALSEPRDAIED 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           +IEPY+IQ G++QRTPRGRLL   A++HLG+  P+R
Sbjct: 301 IIEPYLIQCGYLQRTPRGRLLTSHAFRHLGLAEPNR 336


>gi|156933561|ref|YP_001437477.1| Holliday junction DNA helicase RuvB [Cronobacter sakazakii ATCC
           BAA-894]
 gi|166231491|sp|A7MEA3|RUVB_ENTS8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|156531815|gb|ABU76641.1| hypothetical protein ESA_01381 [Cronobacter sakazakii ATCC BAA-894]
          Length = 336

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 193/334 (57%), Positives = 251/334 (75%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSR-NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L++  ++  E+     +RP+ LEE+ GQ +  S +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRLVAPGSIVAEEVADRAIRPKLLEEYIGQPQVRSQMEIFIQAAKLRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IV R A+  GL + DEA+ E+A RSRGTPRIA RLLRRVRDFAEV H  
Sbjct: 181 LEFYQVADLQHIVSRSARHMGLEMNDEASLEVAKRSRGTPRIANRLLRRVRDFAEVRHDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I + +A  AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 VINQHVASQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +EP++IQQGF+QRTPRGR+    AW H GI  P 
Sbjct: 301 LEPFLIQQGFLQRTPRGRMATTRAWNHFGITPPQ 334


>gi|121595985|ref|YP_987881.1| Holliday junction DNA helicase RuvB [Acidovorax sp. JS42]
 gi|171769522|sp|A1WC30|RUVB_ACISJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|120608065|gb|ABM43805.1| Holliday junction DNA helicase RuvB [Acidovorax sp. JS42]
          Length = 356

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 194/332 (58%), Positives = 243/332 (73%), Gaps = 2/332 (0%)

Query: 4   REGLLS--RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           RE ++S     SQE+A    LRP+ L+E+ GQ +A   L++FI AAK R EALDHVL  G
Sbjct: 16  RERVVSAAPASSQEEALERALRPKLLQEYVGQAKAREQLEIFIGAAKKRGEALDHVLLFG 75

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTL+ ++A ELGVN R TSGPV+ K  DLAALLTNLE  DVLFIDEIHRLS +V
Sbjct: 76  PPGLGKTTLSHIIATELGVNLRQTSGPVLEKPKDLAALLTNLERNDVLFIDEIHRLSPVV 135

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILYPA+ED+Q+D+M+GEGP+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  RL 
Sbjct: 136 EEILYPALEDYQIDIMIGEGPAARSIKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLE 195

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY  ++L  IV R A L G  +  E   EIA RSRGTPRIA RLLRRVRD+AEV  +  I
Sbjct: 196 FYTPDELARIVMRSAGLLGAPIDAEGGMEIARRSRGTPRIANRLLRRVRDYAEVKGSGHI 255

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T +IA+ AL  L +D  GFD +D + L  +   F GGPVG++ I+A + E    IED+IE
Sbjct: 256 TLDIANRALTMLDVDPQGFDVMDRKLLEAVVHRFDGGPVGLDNIAASIGEESGTIEDVIE 315

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           PY+IQQG++QRTPRGR+    A++HLG+  P 
Sbjct: 316 PYLIQQGYLQRTPRGRVATLAAYRHLGVAPPR 347


>gi|154498067|ref|ZP_02036445.1| hypothetical protein BACCAP_02048 [Bacteroides capillosus ATCC
           29799]
 gi|150273057|gb|EDN00214.1| hypothetical protein BACCAP_02048 [Bacteroides capillosus ATCC
           29799]
          Length = 351

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 182/330 (55%), Positives = 246/330 (74%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
            E L++ +++++D +   LRP+TL E+ GQ +A  NL+VFI+AAK R E LDHVL  GPP
Sbjct: 13  EEPLVTTSLTRDDENEGSLRPKTLSEYIGQKKAKGNLEVFIQAAKMRGEPLDHVLLHGPP 72

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTL+ ++A E+GVN R TSGP I K GDLAALLTNL++ D+LF+DEIHRL+  VEE
Sbjct: 73  GLGKTTLSGIIANEMGVNIRITSGPAIEKPGDLAALLTNLQENDILFVDEIHRLNRSVEE 132

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILYPAMEDF +D+++G+GPSA S++++L RFTLI ATTR G L+ PL+DRFG+ +RL  Y
Sbjct: 133 ILYPAMEDFAIDIIIGKGPSANSIRLDLPRFTLIGATTRAGQLSAPLRDRFGVTLRLELY 192

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
             ++L  IV R A + G+ +  E A EIA RSRGTPRIA R+LRRVRDFA+V     ITR
Sbjct: 193 TPDELALIVSRSAGILGVPIEAEGAMEIARRSRGTPRIANRMLRRVRDFAQVRAGGVITR 252

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           ++AD AL  L +D +G D +D R LT I  ++ GGPVG+ET++A ++E    +ED+ EPY
Sbjct: 253 DVADEALSALEVDYLGLDAVDRRMLTSIIEHYSGGPVGLETLAATINEEAVTLEDVYEPY 312

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           ++Q GF+ RTPRGR +   A++HLG+ +P 
Sbjct: 313 LMQMGFLTRTPRGRCVTRRAYEHLGLPVPR 342


>gi|255281766|ref|ZP_05346321.1| holliday junction DNA helicase RuvB [Bryantella formatexigens DSM
           14469]
 gi|255267833|gb|EET61038.1| holliday junction DNA helicase RuvB [Bryantella formatexigens DSM
           14469]
          Length = 337

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 172/332 (51%), Positives = 239/332 (71%), Gaps = 1/332 (0%)

Query: 4   REGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           ++ ++   V +EDA I   LRP+TL+E+ GQ +A  NLK++IEAAK R ++LDHVLF GP
Sbjct: 2   KKRIIETEVMEEDARIEPSLRPKTLDEYIGQEKAKQNLKIYIEAAKQRGDSLDHVLFYGP 61

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++A E+GVN + TSGP I K G++AA+L NL++ DVLF+DEIHRL+  VE
Sbjct: 62  PGLGKTTLAGIIANEMGVNMKVTSGPAIEKPGEMAAILNNLQEGDVLFVDEIHRLNRQVE 121

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMED+ +D+M+G+G +ARS+++ L RFTL+ ATTR GLLT PL+DRFG+   L +
Sbjct: 122 EVLYPAMEDYAIDIMIGKGATARSIRLELPRFTLVGATTRAGLLTAPLRDRFGVIHHLEY 181

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y +E+L TI+   AK  G+ +    A E+A RSRGTPR+A RLL+RVRDFA+V +   IT
Sbjct: 182 YTVEELSTIICHSAKALGVEIDAGGAEELAKRSRGTPRLANRLLKRVRDFAQVKYDGNIT 241

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           ++IA  AL  L +D+ G D  D   L  +   F GGPVG++T++A + E    IED+ EP
Sbjct: 242 KDIACFALDLLEVDRYGLDVTDRNLLLTLIEKFSGGPVGLDTLAATIGEDAGTIEDVYEP 301

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           Y+++ GFI RTPRGR+    A+ HL + +  +
Sbjct: 302 YLLKNGFINRTPRGRVATEKAYHHLNLQLQEK 333


>gi|86146484|ref|ZP_01064807.1| Holliday junction DNA helicase RuvB [Vibrio sp. MED222]
 gi|218709102|ref|YP_002416723.1| Holliday junction DNA helicase RuvB [Vibrio splendidus LGP32]
 gi|254767450|sp|B7VMI4|RUVB_VIBSL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|85835747|gb|EAQ53882.1| Holliday junction DNA helicase RuvB [Vibrio sp. MED222]
 gi|218322121|emb|CAV18234.1| Holliday junction DNA helicase ruvB [Vibrio splendidus LGP32]
          Length = 338

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 193/335 (57%), Positives = 249/335 (74%), Gaps = 3/335 (0%)

Query: 1   MMDREGLLSRN---VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M++ + L++ +      ED     +RP+ L ++ GQ      +++FI+AA+ R EALDH+
Sbjct: 1   MIEADRLIAPDNPVFKDEDVIDRAIRPKALADYQGQDHVRGQMEIFIKAAQMRNEALDHL 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTLA +VA E+ VN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRL
Sbjct: 61  LIFGPPGLGKTTLANIVANEMDVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           S +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI 
Sbjct: 121 SPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIT 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            RL +Y++EDL+ IVQR A   GL++  + A E+A R+RGTPRIA RLLRRVRD+AEV  
Sbjct: 181 QRLEYYKVEDLQNIVQRSADCLGLSMESQGALEVARRARGTPRIANRLLRRVRDYAEVKG 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
              I  E+AD AL  L +D  GFD +D + L  I   FGGGPVGI+ ++A + E RD IE
Sbjct: 241 DGHICPEVADKALNMLDVDAKGFDYMDRKLLLAIMEKFGGGPVGIDNMAAAIGEERDTIE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           D++EPY+IQQG++QRTPRGR+    A+ H GID P
Sbjct: 301 DVLEPYLIQQGYLQRTPRGRIATDRAYLHFGIDKP 335


>gi|23502560|ref|NP_698687.1| Holliday junction DNA helicase RuvB [Brucella suis 1330]
 gi|62290574|ref|YP_222367.1| Holliday junction DNA helicase RuvB [Brucella abortus bv. 1 str.
           9-941]
 gi|82700490|ref|YP_415064.1| Holliday junction DNA helicase RuvB [Brucella melitensis biovar
           Abortus 2308]
 gi|148559079|ref|YP_001259555.1| Holliday junction DNA helicase RuvB [Brucella ovis ATCC 25840]
 gi|161619631|ref|YP_001593518.1| Holliday junction DNA helicase B [Brucella canis ATCC 23365]
 gi|163845282|ref|YP_001622937.1| Holliday junction DNA helicase RuvB [Brucella suis ATCC 23445]
 gi|189024792|ref|YP_001935560.1| Holliday junction DNA helicase RuvB [Brucella abortus S19]
 gi|225628271|ref|ZP_03786305.1| Holliday junction DNA helicase RuvB [Brucella ceti str. Cudo]
 gi|237816079|ref|ZP_04595075.1| Holliday junction DNA helicase RuvB [Brucella abortus str. 2308 A]
 gi|254689870|ref|ZP_05153124.1| Holliday junction DNA helicase RuvB [Brucella abortus bv. 6 str.
           870]
 gi|254694363|ref|ZP_05156191.1| Holliday junction DNA helicase RuvB [Brucella abortus bv. 3 str.
           Tulya]
 gi|254698021|ref|ZP_05159849.1| Holliday junction DNA helicase RuvB [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254700363|ref|ZP_05162191.1| Holliday junction DNA helicase RuvB [Brucella suis bv. 5 str. 513]
 gi|254703481|ref|ZP_05165309.1| Holliday junction DNA helicase RuvB [Brucella suis bv. 3 str. 686]
 gi|254708430|ref|ZP_05170258.1| Holliday junction DNA helicase RuvB [Brucella pinnipedialis
           M163/99/10]
 gi|254708716|ref|ZP_05170527.1| Holliday junction DNA helicase RuvB [Brucella pinnipedialis B2/94]
 gi|254714563|ref|ZP_05176374.1| Holliday junction DNA helicase RuvB [Brucella ceti M644/93/1]
 gi|254717460|ref|ZP_05179271.1| Holliday junction DNA helicase RuvB [Brucella ceti M13/05/1]
 gi|254730905|ref|ZP_05189483.1| Holliday junction DNA helicase RuvB [Brucella abortus bv. 4 str.
           292]
 gi|256030242|ref|ZP_05443856.1| Holliday junction DNA helicase RuvB [Brucella pinnipedialis
           M292/94/1]
 gi|256061739|ref|ZP_05451876.1| Holliday junction DNA helicase RuvB [Brucella neotomae 5K33]
 gi|256160417|ref|ZP_05458106.1| Holliday junction DNA helicase RuvB [Brucella ceti M490/95/1]
 gi|256255623|ref|ZP_05461159.1| Holliday junction DNA helicase RuvB [Brucella ceti B1/94]
 gi|256258124|ref|ZP_05463660.1| Holliday junction DNA helicase RuvB [Brucella abortus bv. 9 str.
           C68]
 gi|256370111|ref|YP_003107622.1| Holliday junction DNA helicase RuvB [Brucella microti CCM 4915]
 gi|260167917|ref|ZP_05754728.1| Holliday junction DNA helicase RuvB [Brucella sp. F5/99]
 gi|260547182|ref|ZP_05822920.1| Holliday junction DNA helicase RuvB [Brucella abortus NCTC 8038]
 gi|260568787|ref|ZP_05839255.1| Holliday junction DNA helicase RuvB [Brucella suis bv. 4 str. 40]
 gi|260755402|ref|ZP_05867750.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella abortus
           bv. 6 str. 870]
 gi|260758624|ref|ZP_05870972.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella abortus
           bv. 4 str. 292]
 gi|260762456|ref|ZP_05874793.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|260884417|ref|ZP_05896031.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella abortus
           bv. 9 str. C68]
 gi|261214673|ref|ZP_05928954.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella abortus
           bv. 3 str. Tulya]
 gi|261219292|ref|ZP_05933573.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella ceti
           M13/05/1]
 gi|261222826|ref|ZP_05937107.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella ceti
           B1/94]
 gi|261315929|ref|ZP_05955126.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella
           pinnipedialis M163/99/10]
 gi|261316208|ref|ZP_05955405.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella
           pinnipedialis B2/94]
 gi|261322353|ref|ZP_05961550.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella ceti
           M644/93/1]
 gi|261325743|ref|ZP_05964940.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella
           neotomae 5K33]
 gi|261750858|ref|ZP_05994567.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella suis
           bv. 5 str. 513]
 gi|261754111|ref|ZP_05997820.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella suis
           bv. 3 str. 686]
 gi|261757356|ref|ZP_06001065.1| holliday junction DNA helicase RuvB [Brucella sp. F5/99]
 gi|265987270|ref|ZP_06099827.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella
           pinnipedialis M292/94/1]
 gi|265998785|ref|ZP_06111342.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella ceti
           M490/95/1]
 gi|297248973|ref|ZP_06932681.1| Holliday junction DNA helicase RuvB [Brucella abortus bv. 5 str.
           B3196]
 gi|306841421|ref|ZP_07474123.1| Holliday junction DNA helicase RuvB [Brucella sp. BO2]
 gi|306844694|ref|ZP_07477279.1| Holliday junction DNA helicase RuvB [Brucella sp. BO1]
 gi|29336738|sp|Q8FZ02|RUVB_BRUSU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|81309382|sp|Q57BH8|RUVB_BRUAB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|97189931|sp|Q2YRD2|RUVB_BRUA2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|166231466|sp|A5VS58|RUVB_BRUO2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|189045782|sp|A9M7K0|RUVB_BRUC2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|189045875|sp|A9WWH9|RUVB_BRUSI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|238689392|sp|B2S7D9|RUVB_BRUA1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|23348561|gb|AAN30602.1| Holliday junction DNA helicase RuvB [Brucella suis 1330]
 gi|62196706|gb|AAX75006.1| RuvB, Holliday junction DNA helicase [Brucella abortus bv. 1 str.
           9-941]
 gi|82616591|emb|CAJ11670.1| CbxX/CfqX superfamily:Disease resistance protein:ATP/GTP-binding
           site motif A (P-loop):AAA ATPase:AAA ATPase, central
           region: [Brucella melitensis biovar Abortus 2308]
 gi|148370336|gb|ABQ60315.1| holliday junction DNA helicase RuvB [Brucella ovis ATCC 25840]
 gi|161336442|gb|ABX62747.1| Holliday junction DNA helicase RuvB [Brucella canis ATCC 23365]
 gi|163676005|gb|ABY40115.1| Holliday junction DNA helicase RuvB [Brucella suis ATCC 23445]
 gi|189020364|gb|ACD73086.1| Holliday junction DNA helicase RuvB [Brucella abortus S19]
 gi|225616117|gb|EEH13165.1| Holliday junction DNA helicase RuvB [Brucella ceti str. Cudo]
 gi|237788742|gb|EEP62954.1| Holliday junction DNA helicase RuvB [Brucella abortus str. 2308 A]
 gi|256000274|gb|ACU48673.1| Holliday junction DNA helicase RuvB [Brucella microti CCM 4915]
 gi|260095547|gb|EEW79425.1| Holliday junction DNA helicase RuvB [Brucella abortus NCTC 8038]
 gi|260154171|gb|EEW89253.1| Holliday junction DNA helicase RuvB [Brucella suis bv. 4 str. 40]
 gi|260668942|gb|EEX55882.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella abortus
           bv. 4 str. 292]
 gi|260672882|gb|EEX59703.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|260675510|gb|EEX62331.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella abortus
           bv. 6 str. 870]
 gi|260873945|gb|EEX81014.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella abortus
           bv. 9 str. C68]
 gi|260916280|gb|EEX83141.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella abortus
           bv. 3 str. Tulya]
 gi|260921410|gb|EEX88063.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella ceti
           B1/94]
 gi|260924381|gb|EEX90949.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella ceti
           M13/05/1]
 gi|261295043|gb|EEX98539.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella ceti
           M644/93/1]
 gi|261295431|gb|EEX98927.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella
           pinnipedialis B2/94]
 gi|261301723|gb|EEY05220.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella
           neotomae 5K33]
 gi|261304955|gb|EEY08452.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella
           pinnipedialis M163/99/10]
 gi|261737340|gb|EEY25336.1| holliday junction DNA helicase RuvB [Brucella sp. F5/99]
 gi|261740611|gb|EEY28537.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella suis
           bv. 5 str. 513]
 gi|261743864|gb|EEY31790.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella suis
           bv. 3 str. 686]
 gi|262553474|gb|EEZ09243.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella ceti
           M490/95/1]
 gi|264659467|gb|EEZ29728.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella
           pinnipedialis M292/94/1]
 gi|297174106|gb|EFH33463.1| Holliday junction DNA helicase RuvB [Brucella abortus bv. 5 str.
           B3196]
 gi|306274866|gb|EFM56636.1| Holliday junction DNA helicase RuvB [Brucella sp. BO1]
 gi|306288527|gb|EFM59879.1| Holliday junction DNA helicase RuvB [Brucella sp. BO2]
          Length = 346

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 241/332 (72%), Positives = 284/332 (85%), Gaps = 2/332 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M DR  L+  +   ++   + LRP+TL++F GQ  A +NLKVFIEAAK R EALDHVLFV
Sbjct: 1   MSDRNPLIDADRRADE--DNTLRPQTLDDFVGQAAARANLKVFIEAAKVRGEALDHVLFV 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++A+ELGVNFRSTSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRLS  
Sbjct: 59  GPPGLGKTTLAQIMAKELGVNFRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSPA 118

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILYPAMEDFQLDL++GEGP+ARSVKI+L++FTL+AATTR+GLLT PL+DRFGIP+RL
Sbjct: 119 VEEILYPAMEDFQLDLIIGEGPAARSVKIDLAKFTLVAATTRLGLLTTPLRDRFGIPVRL 178

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           NFY +E+L+ IV+RGA++  + ++ + A E+A RSRGTPRIAGRLLRRVRDFA VA A  
Sbjct: 179 NFYTVEELEYIVRRGARIMQMGISSDGAREVARRSRGTPRIAGRLLRRVRDFALVAGADI 238

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I R IAD AL RL +D  G DQLD RYL +IARNFGGGPVGIETI+AGLSEPRDAIED+I
Sbjct: 239 IDRRIADEALSRLEVDNRGLDQLDRRYLNIIARNFGGGPVGIETIAAGLSEPRDAIEDII 298

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EPY+IQQGF+QRTPRGR+L  +AWQHLG+  P
Sbjct: 299 EPYLIQQGFLQRTPRGRVLTAVAWQHLGLPAP 330


>gi|239995978|ref|ZP_04716502.1| Holliday junction DNA helicase RuvB [Alteromonas macleodii ATCC
           27126]
          Length = 334

 Score =  385 bits (988), Expect = e-105,   Method: Composition-based stats.
 Identities = 190/334 (56%), Positives = 248/334 (74%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L++   S ED  I   +RP+ LE++TGQ   C  +++FI+AA+ R +ALDH+L 
Sbjct: 1   MIEADRLITPEASTEDEVIDRAIRPKMLEDYTGQPHVCEQMEIFIQAARNRDDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN ++TSGPV+ KAGDLAALLTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNIKTTSGPVLEKAGDLAALLTNLERNDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY ++DL +IV R A    L + DE A E+A RSRGTPRIA RLLRRVRD+AE+    
Sbjct: 181 LEFYNVKDLTSIVARSASYLNLDMNDEGAQEVARRSRGTPRIANRLLRRVRDYAEIKADG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           T+  + A  AL  L +DK GFD +D + LT I   F GGPVG++ ++A + E ++ IED+
Sbjct: 241 TVGADTASKALDMLDVDKEGFDYMDRKLLTAIIEKFDGGPVGLDNLAAAIGEEKETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           IEP++IQQGF+QRTPRGR++   A+ H G     
Sbjct: 301 IEPFLIQQGFLQRTPRGRIVSQRAYLHFGFAPSE 334


>gi|300309763|ref|YP_003773855.1| Holliday junction resolvase DNA helicase subunit [Herbaspirillum
           seropedicae SmR1]
 gi|300072548|gb|ADJ61947.1| Holliday junction resolvase, DNA helicase subunit protein
           [Herbaspirillum seropedicae SmR1]
          Length = 351

 Score =  385 bits (988), Expect = e-105,   Method: Composition-based stats.
 Identities = 189/334 (56%), Positives = 247/334 (73%), Gaps = 2/334 (0%)

Query: 2   MDREGLLS--RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
              + ++S     + E+A    LRP+ L+E+ GQ +  + L++FI AA+ R E LDH L 
Sbjct: 8   FSEQRIISATPASANEEAIERALRPKQLDEYVGQEKVRAQLEIFISAARKRGEPLDHTLL 67

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTT+A ++ARE+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHR+S 
Sbjct: 68  FGPPGLGKTTMAHIIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRMSP 127

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPA+ED+Q+D+M+GEGP+ARSV+++L  FTL+ ATTR G+LTNPL+DRFGI  R
Sbjct: 128 VVEEILYPALEDYQIDIMIGEGPAARSVRLDLQPFTLVGATTRAGMLTNPLRDRFGIVAR 187

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY   +L  IV R A L    + ++ A EIA RSRGTPRIA RLLRRVRD+AEV    
Sbjct: 188 LEFYTPPELARIVTRSAGLLNAPIVEDGALEIARRSRGTPRIANRLLRRVRDYAEVKGQG 247

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            ITRE+ADAAL+ L +D +GFD +D + L  +   FGGGPVG++ ++A + E RD IED+
Sbjct: 248 RITREMADAALVMLDVDPVGFDLMDRKLLEAVLFKFGGGPVGLDNLAAAIGEERDTIEDV 307

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +EPY+IQQG++QRTPRGR+    A+QH G+  P 
Sbjct: 308 LEPYLIQQGYLQRTPRGRIATGAAYQHFGVTAPR 341


>gi|208779281|ref|ZP_03246627.1| holliday junction DNA helicase RuvB [Francisella novicida FTG]
 gi|208745081|gb|EDZ91379.1| holliday junction DNA helicase RuvB [Francisella novicida FTG]
 gi|332678175|gb|AEE87304.1| Holliday junction DNA helicase RuvB [Francisella cf. novicida Fx1]
          Length = 348

 Score =  385 bits (988), Expect = e-105,   Method: Composition-based stats.
 Identities = 198/336 (58%), Positives = 251/336 (74%), Gaps = 3/336 (0%)

Query: 1   MMDREGLLSRNVSQ---EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M++ + ++S N +Q   E+     +RP+TL E+ GQ      +++FI+AAKAR +ALDH 
Sbjct: 1   MIETDRIISANTTQTNDENVIDRAIRPKTLAEYEGQPAVREQMEIFIQAAKARKDALDHT 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTL+ ++A E+GV  + TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRL
Sbjct: 61  LIFGPPGLGKTTLSNIIANEMGVELKQTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           S +VEEILYPAMED+QLD+M+GEGP+ARS+KI+L  FTL+ ATTR GLLT+PL+DRFGI 
Sbjct: 121 SPVVEEILYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLVGATTRAGLLTSPLRDRFGII 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            RL FY I+DL  IV R AKL  L +T + A EIA RSRGTPRIA RLLRRVRD+A+V  
Sbjct: 181 QRLEFYSIDDLSKIVYRSAKLLNLDITTDGAMEIAKRSRGTPRIANRLLRRVRDYAQVKG 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
           +  I  EIAD AL  L +D +GFD +D RYL  +   F GGPVG++T+SA LSE +  IE
Sbjct: 241 SGVICFEIADKALSMLKVDPVGFDHMDHRYLLTLMEKFAGGPVGLDTMSAALSEEKGTIE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           D+IEPY+IQQG+I RT RGR+   +A+ H  + IP 
Sbjct: 301 DVIEPYLIQQGYIMRTARGRIATLLAYNHFKLKIPD 336


>gi|119774974|ref|YP_927714.1| Holliday junction DNA helicase RuvB [Shewanella amazonensis SB2B]
 gi|166231551|sp|A1S6N8|RUVB_SHEAM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|119767474|gb|ABM00045.1| Holliday junction DNA helicase RuvB [Shewanella amazonensis SB2B]
          Length = 334

 Score =  385 bits (988), Expect = e-105,   Method: Composition-based stats.
 Identities = 196/334 (58%), Positives = 252/334 (75%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSR-NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+   ++ QED     +RP+ L+E+TGQ +  + LKVFIEAAK R EALDH+L 
Sbjct: 1   MIEADRLIQPQDLGQEDVIDRAMRPKLLDEYTGQDDTRAQLKVFIEAAKKRGEALDHMLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN +STSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS 
Sbjct: 61  YGPPGLGKTTLANIVANEMGVNIKSTSGPVLEKAGDLAALLTNLEEGDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ ATTR G LT+PL+ RFGIP+R
Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRARFGIPLR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY + DL +IV R AK+  + + +  A EIA RSRGTPRIA RLLRRVRDFAEV H  
Sbjct: 181 LEFYNVRDLSSIVARSAKVMDVPMDEGGAEEIARRSRGTPRIANRLLRRVRDFAEVKHDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I+R +A +AL  L +D  GFD +D + L  I   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 AISRAVAQSALDLLDVDSEGFDYMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +EP++IQQGF+QRTPRGR+    A+ H  +  P 
Sbjct: 301 LEPFLIQQGFVQRTPRGRIATARAYSHFDLIKPD 334


>gi|317131996|ref|YP_004091310.1| Holliday junction DNA helicase RuvB [Ethanoligenens harbinense
           YUAN-3]
 gi|315469975|gb|ADU26579.1| Holliday junction DNA helicase RuvB [Ethanoligenens harbinense
           YUAN-3]
          Length = 348

 Score =  385 bits (988), Expect = e-105,   Method: Composition-based stats.
 Identities = 189/331 (57%), Positives = 239/331 (72%), Gaps = 1/331 (0%)

Query: 4   REGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
              +++ + + ED D    LRPRTL E+TGQ +   NLK+FIEAAK R EALDHVL  GP
Sbjct: 6   ENRIVTPDYTAEDVDAEQSLRPRTLAEYTGQEKVKENLKIFIEAAKKRGEALDHVLLYGP 65

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA V+A E+GVN R TSGP I K GDLAALLTNL   D+LFIDE+HRLS  VE
Sbjct: 66  PGLGKTTLAGVIANEMGVNLRVTSGPAIEKQGDLAALLTNLAPHDILFIDEVHRLSRSVE 125

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMED+ LD+++G+GPSARS++++L RFTLI ATTR G LT+PL+DRFG+ +RL  
Sbjct: 126 EVLYPAMEDYALDIILGKGPSARSIRLDLPRFTLIGATTRAGQLTSPLRDRFGVLMRLEL 185

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  E+L  I+ R A +  +      A EIA R+RGTPR+A RLLRRVRDFA+V  +  IT
Sbjct: 186 YTKEELCGIITRSAGILQIDCEPGGAMEIAGRARGTPRVANRLLRRVRDFAQVIGSGVIT 245

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           +E A  AL RL IDK+G D  D R L M+ R++GGGP GIET++A + E    +ED+ EP
Sbjct: 246 QETAGRALDRLEIDKLGLDATDRRMLGMLIRHYGGGPAGIETLAAAMGEEAVTLEDVCEP 305

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           Y++Q GF+ RTPRGR+    A+ HLG+  P 
Sbjct: 306 YLMQVGFLMRTPRGRMATAAAYAHLGLTPPQ 336


>gi|269103017|ref|ZP_06155714.1| holliday junction DNA helicase RuvB [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268162915|gb|EEZ41411.1| holliday junction DNA helicase RuvB [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 336

 Score =  385 bits (988), Expect = e-105,   Method: Composition-based stats.
 Identities = 195/336 (58%), Positives = 251/336 (74%), Gaps = 3/336 (0%)

Query: 1   MMDREGLLSRNVS---QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M++ + L+S N +   +ED     +RP+ L+++ GQ      +++FI+AAK R EALDH+
Sbjct: 1   MIEADRLISANHTTSREEDVIDRAIRPKLLQDYRGQDHVRDQMEIFIKAAKLRNEALDHL 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTLA +VA E+ VN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRL
Sbjct: 61  LIFGPPGLGKTTLANIVANEMDVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           S  +EEILYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI 
Sbjct: 121 SPHIEEILYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIT 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            RL +Y++EDLK IV+R A   GL++ +  A E+AMRSRGTPRIA RLLRRVRD+AEV  
Sbjct: 181 QRLEYYKVEDLKNIVKRSADCLGLSMEEAGAMEVAMRSRGTPRIANRLLRRVRDYAEVKG 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
              I  ++A  AL  L +D  GFD +D + L  I   F GGPVG++ ++A + E RD IE
Sbjct: 241 DGHICPDVASKALDMLDVDSSGFDYMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERDTIE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           D++EPY+IQQGF+QRTPRGR+    A+ H G+DIP 
Sbjct: 301 DVLEPYLIQQGFLQRTPRGRIATHRAYLHFGLDIPD 336


>gi|254499311|ref|ZP_05111983.1| Holliday junction DNA helicase B [Legionella drancourtii LLAP12]
 gi|254351466|gb|EET10329.1| Holliday junction DNA helicase B [Legionella drancourtii LLAP12]
          Length = 336

 Score =  385 bits (988), Expect = e-105,   Method: Composition-based stats.
 Identities = 189/335 (56%), Positives = 249/335 (74%), Gaps = 1/335 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S   +  E+A    +RP +L E+ GQ    S +++FI+AAK R +ALDHVL 
Sbjct: 1   MLESDRLISTQSTVSEEAIDRAIRPLSLREYIGQEAVSSQMQIFIDAAKKRNDALDHVLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A E+GVN R TSGPVI +AGD+AA+LTNL++ DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIIAHEMGVNLRQTSGPVIERAGDIAAILTNLQENDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           ++EEILYPAMED++LD+M+GEGP+ARS+K+ L  FTLI ATTR GLLT+PL+DRFGI  R
Sbjct: 121 VIEEILYPAMEDYKLDIMIGEGPAARSIKLELPPFTLIGATTRAGLLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y I+ L  IV R A+L  +    E A EIAMRSRGTPRIA RLLRRVRD+AEV  + 
Sbjct: 181 LEYYSIDSLSQIVSRSAQLLNVVTQSEGAREIAMRSRGTPRIANRLLRRVRDYAEVKGSG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  +IA  AL  L +DK GFD +D + L  +   FGGGPVG+++I+A + E +  IED+
Sbjct: 241 VINIDIAQRALEMLDVDKNGFDLMDRKLLLSVIEQFGGGPVGVDSIAAAIGEEKGTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           +EP++IQQGF+ RTPRGR+  P A+QH G++   +
Sbjct: 301 LEPFLIQQGFLMRTPRGRIATPRAYQHFGLNTVEQ 335


>gi|30264490|ref|NP_846867.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str. Ames]
 gi|47529948|ref|YP_021297.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|65321786|ref|ZP_00394745.1| COG2255: Holliday junction resolvasome, helicase subunit [Bacillus
           anthracis str. A2012]
 gi|165871997|ref|ZP_02216638.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str. A0488]
 gi|167636202|ref|ZP_02394506.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str. A0442]
 gi|167640705|ref|ZP_02398965.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str. A0193]
 gi|170688711|ref|ZP_02879916.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str. A0465]
 gi|170709114|ref|ZP_02899541.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str. A0389]
 gi|177653980|ref|ZP_02936021.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str. A0174]
 gi|190566862|ref|ZP_03019778.1| Holliday junction DNA helicase RuvB [Bacillus anthracis
           Tsiankovskii-I]
 gi|227817198|ref|YP_002817207.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str. CDC
           684]
 gi|229602286|ref|YP_002868706.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str. A0248]
 gi|254684175|ref|ZP_05148035.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str.
           CNEVA-9066]
 gi|254724654|ref|ZP_05186437.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str. A1055]
 gi|254736522|ref|ZP_05194228.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str.
           Western North America USA6153]
 gi|254741560|ref|ZP_05199247.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str. Kruger
           B]
 gi|254751341|ref|ZP_05203378.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str.
           Vollum]
 gi|254757673|ref|ZP_05209700.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str.
           Australia 94]
 gi|33301602|sp|Q81LG9|RUVB_BACAN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|254767408|sp|C3P9A7|RUVB_BACAA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|254767409|sp|C3L6U9|RUVB_BACAC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|30259148|gb|AAP28353.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str. Ames]
 gi|47505096|gb|AAT33772.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|164712287|gb|EDR17823.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str. A0488]
 gi|167511277|gb|EDR86663.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str. A0193]
 gi|167528423|gb|EDR91191.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str. A0442]
 gi|170125966|gb|EDS94866.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str. A0389]
 gi|170667397|gb|EDT18155.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str. A0465]
 gi|172081035|gb|EDT66113.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str. A0174]
 gi|190561853|gb|EDV15822.1| Holliday junction DNA helicase RuvB [Bacillus anthracis
           Tsiankovskii-I]
 gi|227005878|gb|ACP15621.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str. CDC
           684]
 gi|229266694|gb|ACQ48331.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str. A0248]
          Length = 333

 Score =  384 bits (987), Expect = e-105,   Method: Composition-based stats.
 Identities = 189/333 (56%), Positives = 247/333 (74%), Gaps = 2/333 (0%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD E LLS   + EDAD+   LRP+TL ++ GQ +A  NL+VFIEAAK R E LDHVL  
Sbjct: 1   MD-ERLLSGESAYEDADLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLLY 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT+L+  DVLFIDEIHRL   
Sbjct: 60  GPPGLGKTTLANIIANEMGVNVRTTSGPAIERPGDLAAVLTSLQPGDVLFIDEIHRLHRS 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EE+LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTR G L+ PL+DRFG+  RL
Sbjct: 120 IEEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y ++ L  IV+R A++  + +   AA EIA R+RGTPRIA RLLRRVRDFA+V    T
Sbjct: 180 EYYTVDQLSAIVERTAEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRGNGT 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +T EI   AL  L +DK+G D +D + L  I   F GGPVG+ET+SA + E    IED+ 
Sbjct: 240 VTMEITQMALELLQVDKLGLDHIDHKLLLGIIEKFHGGPVGLETVSATIGEESHTIEDVY 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY++Q GF+QRTPRGR++ P+A++H G+++P 
Sbjct: 300 EPYLLQIGFLQRTPRGRIVTPLAYEHFGMEMPK 332


>gi|49187310|ref|YP_030562.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str.
           Sterne]
 gi|49181237|gb|AAT56613.1| Holliday junction DNA helicase RuvB [Bacillus anthracis str.
           Sterne]
          Length = 336

 Score =  384 bits (987), Expect = e-105,   Method: Composition-based stats.
 Identities = 189/334 (56%), Positives = 248/334 (74%), Gaps = 2/334 (0%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           +MD E LLS   + EDAD+   LRP+TL ++ GQ +A  NL+VFIEAAK R E LDHVL 
Sbjct: 3   IMD-ERLLSGESAYEDADLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLL 61

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT+L+  DVLFIDEIHRL  
Sbjct: 62  YGPPGLGKTTLANIIANEMGVNVRTTSGPAIERPGDLAAVLTSLQPGDVLFIDEIHRLHR 121

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            +EE+LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTR G L+ PL+DRFG+  R
Sbjct: 122 SIEEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSR 181

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y ++ L  IV+R A++  + +   AA EIA R+RGTPRIA RLLRRVRDFA+V    
Sbjct: 182 LEYYTVDQLSAIVERTAEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRGNG 241

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           T+T EI   AL  L +DK+G D +D + L  I   F GGPVG+ET+SA + E    IED+
Sbjct: 242 TVTMEITQMALELLQVDKLGLDHIDHKLLLGIIEKFHGGPVGLETVSATIGEESHTIEDV 301

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            EPY++Q GF+QRTPRGR++ P+A++H G+++P 
Sbjct: 302 YEPYLLQIGFLQRTPRGRIVTPLAYEHFGMEMPK 335


>gi|56708102|ref|YP_169998.1| Holliday junction DNA helicase RuvB [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|89256412|ref|YP_513774.1| Holliday junction DNA helicase RuvB [Francisella tularensis subsp.
           holarctica LVS]
 gi|110670573|ref|YP_667130.1| Holliday junction DNA helicase RuvB [Francisella tularensis subsp.
           tularensis FSC198]
 gi|115314854|ref|YP_763577.1| Holliday junction DNA helicase RuvB [Francisella tularensis subsp.
           holarctica OSU18]
 gi|118497483|ref|YP_898533.1| Holliday junction DNA helicase B [Francisella tularensis subsp.
           novicida U112]
 gi|134301913|ref|YP_001121882.1| Holliday junction DNA helicase RuvB [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|156502503|ref|YP_001428568.1| Holliday junction DNA helicase RuvB [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|167010434|ref|ZP_02275365.1| holliday junction DNA helicase RuvB [Francisella tularensis subsp.
           holarctica FSC200]
 gi|195536176|ref|ZP_03079183.1| holliday junction DNA helicase RuvB [Francisella tularensis subsp.
           novicida FTE]
 gi|254367748|ref|ZP_04983769.1| holliday junction DNA helicase subunit B [Francisella tularensis
           subsp. holarctica 257]
 gi|254369382|ref|ZP_04985394.1| holliday junction DNA helicase [Francisella tularensis subsp.
           holarctica FSC022]
 gi|254370586|ref|ZP_04986591.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254372835|ref|ZP_04988324.1| crossover junction endodeoxyribonuclease [Francisella tularensis
           subsp. novicida GA99-3549]
 gi|290953835|ref|ZP_06558456.1| Holliday junction DNA helicase RuvB [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295312846|ref|ZP_06803578.1| Holliday junction DNA helicase RuvB [Francisella tularensis subsp.
           holarctica URFT1]
 gi|81820774|sp|Q5NG44|RUVB_FRATT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|122325131|sp|Q0BLU4|RUVB_FRATO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|123094512|sp|Q2A3C8|RUVB_FRATH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|123359475|sp|Q14HJ6|RUVB_FRAT1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|166231493|sp|A7NCA9|RUVB_FRATF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|166231494|sp|A0Q6B4|RUVB_FRATN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|166231495|sp|A4IXW0|RUVB_FRATW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|54114219|gb|AAV29743.1| NT02FT0210 [synthetic construct]
 gi|56604594|emb|CAG45646.1| holliday junction DNA helicase, subunit B [Francisella tularensis
           subsp. tularensis SCHU S4]
 gi|89144243|emb|CAJ79516.1| holliday junction DNA helicase, subunit B [Francisella tularensis
           subsp. holarctica LVS]
 gi|110320906|emb|CAL09029.1| holliday junction DNA helicase, subunit B [Francisella tularensis
           subsp. tularensis FSC198]
 gi|115129753|gb|ABI82940.1| crossover junction endodeoxyribonuclease [Francisella tularensis
           subsp. holarctica OSU18]
 gi|118423389|gb|ABK89779.1| holliday junction DNA helicase, subunit B [Francisella novicida
           U112]
 gi|134049690|gb|ABO46761.1| holliday junction DNA helicase RuvB [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134253559|gb|EBA52653.1| holliday junction DNA helicase subunit B [Francisella tularensis
           subsp. holarctica 257]
 gi|151568829|gb|EDN34483.1| hypothetical protein FTBG_00373 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|151570562|gb|EDN36216.1| crossover junction endodeoxyribonuclease [Francisella novicida
           GA99-3549]
 gi|156253106|gb|ABU61612.1| holliday junction DNA helicase [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|157122332|gb|EDO66472.1| holliday junction DNA helicase [Francisella tularensis subsp.
           holarctica FSC022]
 gi|194372653|gb|EDX27364.1| holliday junction DNA helicase RuvB [Francisella tularensis subsp.
           novicida FTE]
 gi|282159302|gb|ADA78693.1| Holliday junction DNA helicase B [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 348

 Score =  384 bits (987), Expect = e-105,   Method: Composition-based stats.
 Identities = 198/336 (58%), Positives = 251/336 (74%), Gaps = 3/336 (0%)

Query: 1   MMDREGLLSRNVSQ---EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M++ + ++S N +Q   E+     +RP+TL E+ GQ      +++FI+AAKAR +ALDH 
Sbjct: 1   MIETDRIISANTAQTNDENVIDRAIRPKTLAEYEGQPAVREQMEIFIQAAKARKDALDHT 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTL+ ++A E+GV  + TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRL
Sbjct: 61  LIFGPPGLGKTTLSNIIANEMGVELKQTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           S +VEEILYPAMED+QLD+M+GEGP+ARS+KI+L  FTL+ ATTR GLLT+PL+DRFGI 
Sbjct: 121 SPVVEEILYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLVGATTRAGLLTSPLRDRFGII 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            RL FY I+DL  IV R AKL  L +T + A EIA RSRGTPRIA RLLRRVRD+A+V  
Sbjct: 181 QRLEFYSIDDLSKIVYRSAKLLNLDITTDGAMEIAKRSRGTPRIANRLLRRVRDYAQVKG 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
           +  I  EIAD AL  L +D +GFD +D RYL  +   F GGPVG++T+SA LSE +  IE
Sbjct: 241 SGVICFEIADKALSMLKVDPVGFDHMDHRYLLTLMEKFAGGPVGLDTMSAALSEEKGTIE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           D+IEPY+IQQG+I RT RGR+   +A+ H  + IP 
Sbjct: 301 DVIEPYLIQQGYIMRTARGRIATLLAYNHFKLKIPD 336


>gi|328676067|gb|AEB28742.1| Holliday junction DNA helicase RuvB [Francisella cf. novicida 3523]
          Length = 348

 Score =  384 bits (987), Expect = e-105,   Method: Composition-based stats.
 Identities = 198/336 (58%), Positives = 251/336 (74%), Gaps = 3/336 (0%)

Query: 1   MMDREGLLSRNVSQ---EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M++ + ++S N +Q   E+     +RP+TL E+ GQ      +++FI+AAKAR +ALDH 
Sbjct: 1   MIETDRIISANTAQTSDENVIDRAIRPKTLAEYEGQPAVREQMEIFIQAAKARKDALDHT 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTL+ ++A E+GV  + TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRL
Sbjct: 61  LIFGPPGLGKTTLSNIIANEMGVELKQTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           S +VEEILYPAMED+QLD+M+GEGP+ARS+KI+L  FTL+ ATTR GLLT+PL+DRFGI 
Sbjct: 121 SPVVEEILYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLVGATTRAGLLTSPLRDRFGII 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            RL FY I+DL  IV R AKL  L +T + A EIA RSRGTPRIA RLLRRVRD+A+V  
Sbjct: 181 QRLEFYSIDDLSKIVYRSAKLLNLDITTDGAMEIAKRSRGTPRIANRLLRRVRDYAQVKG 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
           +  I  EIAD AL  L +D +GFD +D RYL  +   F GGPVG++T+SA LSE +  IE
Sbjct: 241 SGVICFEIADKALSMLKVDPVGFDHMDHRYLLTLMEKFAGGPVGLDTMSAALSEEKGTIE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           D+IEPY+IQQG+I RT RGR+   +A+ H  + IP 
Sbjct: 301 DVIEPYLIQQGYIMRTARGRIATLLAYNHFKLKIPD 336


>gi|298293001|ref|YP_003694940.1| Holliday junction DNA helicase RuvB [Starkeya novella DSM 506]
 gi|296929512|gb|ADH90321.1| Holliday junction DNA helicase RuvB [Starkeya novella DSM 506]
          Length = 345

 Score =  384 bits (987), Expect = e-105,   Method: Composition-based stats.
 Identities = 225/331 (67%), Positives = 276/331 (83%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M+ + L++ +  +ED   + LRP+TL EF GQ +A +NL VFI+AAK R EALDHVLFVG
Sbjct: 1   MNTKRLVTPDKREEDLAEASLRPQTLAEFVGQEQARANLDVFIKAAKTRGEALDHVLFVG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLAQ+VARELGV FR+TSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRL+  V
Sbjct: 61  PPGLGKTTLAQIVARELGVGFRATSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLNPAV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILYPAMED++LDL++GEGP+ARSVKI LS+FTL+ ATTR GLLT PL+DRFGIPIRLN
Sbjct: 121 EEILYPAMEDYELDLIIGEGPAARSVKIQLSKFTLVGATTRSGLLTTPLRDRFGIPIRLN 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY +++L+ +V RGA++ G+ +  + A EIA R+RGTPRIAGRLLRRVRDFA VA    I
Sbjct: 181 FYTVDELELVVTRGARVLGIPIAKDGAREIARRARGTPRIAGRLLRRVRDFALVAGKDVI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
            R  AD AL  L +D  G DQ+D RYL++IA N+GGGPVG+ETI+A LSEPRDAIE++IE
Sbjct: 241 DRAAADHALGHLEVDGAGLDQMDRRYLSVIAMNYGGGPVGVETIAAALSEPRDAIEEIIE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           PY++QQGF+QRTPRGR+L   A++HLG+ +P
Sbjct: 301 PYLVQQGFLQRTPRGRMLTAHAFKHLGLAVP 331


>gi|328542538|ref|YP_004302647.1| Holliday junction ATP-dependent DNA helicase ruvB [polymorphum
           gilvum SL003B-26A1]
 gi|326412284|gb|ADZ69347.1| Holliday junction ATP-dependent DNA helicase ruvB [Polymorphum
           gilvum SL003B-26A1]
          Length = 347

 Score =  384 bits (987), Expect = e-105,   Method: Composition-based stats.
 Identities = 231/334 (69%), Positives = 284/334 (85%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D + +++  +  ++ D + +RP+ L+EF GQ +A +NLK+FIEAAKAR EALDHVLFV
Sbjct: 1   MDDNQRIVTPQIRGDEID-TTMRPQALDEFVGQAQARANLKIFIEAAKARGEALDHVLFV 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++ARELGVNFR+TSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRLS  
Sbjct: 60  GPPGLGKTTLAQIMARELGVNFRATSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSPA 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDFQLDL++GEGP+ARSVKI+L++FTL+AATTR+GLLT PL+DRFGIP+RL
Sbjct: 120 VEEVLYPAMEDFQLDLIIGEGPAARSVKIDLAKFTLVAATTRLGLLTTPLRDRFGIPVRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY +E+L+ IV RGA++ G+ +  + A EIA RSRGTPRIAGRLLRRVRDFA VA  + 
Sbjct: 180 EFYTVEELELIVNRGARILGIGMAPDGAREIAKRSRGTPRIAGRLLRRVRDFAVVAGKQA 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           + RE+AD AL +L +D  G D LD RYLT IA NFGGGPVGIETI+A LSEPRDAIE+++
Sbjct: 240 VDREVADRALSQLEVDGAGLDSLDRRYLTQIALNFGGGPVGIETIAAALSEPRDAIEEIV 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           EPY+IQ GF+QRTPRGRLL  +A++HLG+ +P R
Sbjct: 300 EPYLIQNGFLQRTPRGRLLTALAFRHLGLAVPQR 333


>gi|34499670|ref|NP_903885.1| Holliday junction DNA helicase RuvB [Chromobacterium violaceum ATCC
           12472]
 gi|44888391|sp|Q7NQC5|RUVB_CHRVO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|34105521|gb|AAQ61875.1| holliday junction DNA helicase ruvB [Chromobacterium violaceum ATCC
           12472]
          Length = 345

 Score =  384 bits (987), Expect = e-105,   Method: Composition-based stats.
 Identities = 193/330 (58%), Positives = 245/330 (74%), Gaps = 2/330 (0%)

Query: 4   REGLLSRNVS--QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
              +++   +  QE+A    LRP+ L+E+ GQ +A   L++FIEAAK R EALDHVL  G
Sbjct: 13  ERRIVTPQRASEQEEALERALRPKLLDEYVGQKKAREQLEIFIEAAKKRGEALDHVLLFG 72

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA +VARE+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +V
Sbjct: 73  PPGLGKTTLAHIVAREMGVNLRQTSGPVLERAGDLAALLTNLEPHDVLFIDEIHRLSPVV 132

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILYPA+ED+Q+D+M+GEGP+ARSVKI+L  FTL+ ATTR G+LTNPL+DRFGI  RL 
Sbjct: 133 EEILYPALEDYQIDIMIGEGPAARSVKIDLPPFTLVGATTRAGMLTNPLRDRFGIVARLE 192

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY  E+L  IV R A L  + ++D+ A E+A RSRGTPRIA RLLRRVRD+AEV     +
Sbjct: 193 FYNAEELTRIVSRSAGLLNVQLSDDGAFEVAKRSRGTPRIANRLLRRVRDYAEVKSDGVV 252

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T  +ADAAL  L +D  G D +D + L  I   F GGPVG++ ++A + E  D IED+IE
Sbjct: 253 TMAVADAALAMLDVDPAGLDVMDRKLLQAILEKFSGGPVGLDNVAAAIGESTDTIEDVIE 312

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           P++IQQG++QRTPRGR+    A+ H G+ +
Sbjct: 313 PFLIQQGYLQRTPRGRMATAQAYLHFGLPV 342


>gi|296132700|ref|YP_003639947.1| Holliday junction DNA helicase RuvB [Thermincola sp. JR]
 gi|296031278|gb|ADG82046.1| Holliday junction DNA helicase RuvB [Thermincola potens JR]
          Length = 342

 Score =  384 bits (987), Expect = e-105,   Method: Composition-based stats.
 Identities = 183/328 (55%), Positives = 245/328 (74%), Gaps = 1/328 (0%)

Query: 4   REGLLSRNVSQEDAD-ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
            E ++S    +ED +    LRPR + E+ GQ +   NL+VF+EAAK R+E+LDHVL  GP
Sbjct: 2   EERIVSTKPREEDMEGDYSLRPRRISEYIGQQKVKENLRVFVEAAKQRSESLDHVLLFGP 61

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++A E+GVN R TSGP I + GDLAA+LTNL   D+LFIDEIHRL+  VE
Sbjct: 62  PGLGKTTLAHIIANEMGVNIRITSGPAIERPGDLAAILTNLGQGDILFIDEIHRLNRSVE 121

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMED+ LD+++G+GPSARS++I+L +FTLI ATTR G+LT+PL+DRFG+ +RL F
Sbjct: 122 EVLYPAMEDYALDIIIGKGPSARSLRIDLPKFTLIGATTRAGMLTSPLRDRFGVILRLEF 181

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  E+L  IV+R A +  + + DE A EIA RSRGTPR+A RLL+RVRDFA+V     ++
Sbjct: 182 YTAEELMEIVRRAAAILQVTIDDEGAYEIARRSRGTPRVANRLLKRVRDFAQVKANGHVS 241

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           +E+AD AL  L +D +G D +D R LT I   FGGGPVG++T++A + E  D IED++EP
Sbjct: 242 KEVADMALNSLDVDFLGLDSIDRRLLTTIIDKFGGGPVGLDTLAASIGEEADTIEDVVEP 301

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           +++Q GF+ RTPRGR   P+A++HLG  
Sbjct: 302 FLLQLGFLNRTPRGRQATPLAYKHLGRT 329


>gi|294850953|ref|ZP_06791629.1| Holliday junction DNA helicase RuvB [Brucella sp. NVSL 07-0026]
 gi|294821596|gb|EFG38592.1| Holliday junction DNA helicase RuvB [Brucella sp. NVSL 07-0026]
          Length = 346

 Score =  384 bits (987), Expect = e-105,   Method: Composition-based stats.
 Identities = 240/332 (72%), Positives = 284/332 (85%), Gaps = 2/332 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M DR  L+  +   ++   + LRP+TL++F GQ  A +NLKVFIEAAK R EALDHVLF+
Sbjct: 1   MSDRNPLIDADRRADE--DNTLRPQTLDDFVGQAAARANLKVFIEAAKVRGEALDHVLFI 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++A+ELGVNFRSTSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRLS  
Sbjct: 59  GPPGLGKTTLAQIMAKELGVNFRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSPA 118

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILYPAMEDFQLDL++GEGP+ARSVKI+L++FTL+AATTR+GLLT PL+DRFGIP+RL
Sbjct: 119 VEEILYPAMEDFQLDLIIGEGPAARSVKIDLAKFTLVAATTRLGLLTTPLRDRFGIPVRL 178

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           NFY +E+L+ IV+RGA++  + ++ + A E+A RSRGTPRIAGRLLRRVRDFA VA A  
Sbjct: 179 NFYTVEELEYIVRRGARIMQMGISSDGAREVARRSRGTPRIAGRLLRRVRDFALVAGADI 238

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I R IAD AL RL +D  G DQLD RYL +IARNFGGGPVGIETI+AGLSEPRDAIED+I
Sbjct: 239 IDRRIADEALSRLEVDNRGLDQLDRRYLNIIARNFGGGPVGIETIAAGLSEPRDAIEDII 298

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EPY+IQQGF+QRTPRGR+L  +AWQHLG+  P
Sbjct: 299 EPYLIQQGFLQRTPRGRVLTAVAWQHLGLPAP 330


>gi|114706319|ref|ZP_01439221.1| holliday junction DNA helicase protein [Fulvimarina pelagi
           HTCC2506]
 gi|114538180|gb|EAU41302.1| holliday junction DNA helicase protein [Fulvimarina pelagi
           HTCC2506]
          Length = 348

 Score =  384 bits (987), Expect = e-105,   Method: Composition-based stats.
 Identities = 240/332 (72%), Positives = 286/332 (86%), Gaps = 1/332 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M +   L++     ED D++ LRP+ L+EF GQ +A +NLKVFI AAKAR EALDHVLFV
Sbjct: 1   MSETSRLIAPEKRGEDIDMT-LRPQALDEFVGQAQARANLKVFIGAAKARGEALDHVLFV 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++A+ELGVNFR+TSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRL+  
Sbjct: 60  GPPGLGKTTLAQIMAKELGVNFRATSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLNPA 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILYPAMEDFQLDL++GEGP+ARSVKI+LS+FTL+AATTR+GLLT PL+DRFGIP+RL
Sbjct: 120 VEEILYPAMEDFQLDLIIGEGPAARSVKIDLSKFTLVAATTRIGLLTTPLRDRFGIPVRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           NFY + +L+ IV RGA+L GLA+    + EIA RSRGTPRIAGRLLRRVRDFAE A A T
Sbjct: 180 NFYTVAELEHIVTRGARLMGLAMDKAGSQEIARRSRGTPRIAGRLLRRVRDFAEFAGAGT 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +TR+IAD AL RL +D +G DQLD RYL +IA NFGGGPVGIETI+A LSEPRDAIED++
Sbjct: 240 VTRQIADEALSRLEVDSLGLDQLDRRYLDLIALNFGGGPVGIETIAAALSEPRDAIEDIV 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EPY++QQGFIQRTPRGRL+  +A++HLG+ +P
Sbjct: 300 EPYLLQQGFIQRTPRGRLITQVAFRHLGLALP 331


>gi|54294380|ref|YP_126795.1| Holliday junction DNA helicase B [Legionella pneumophila str. Lens]
 gi|59800219|sp|Q5WWK4|RUVB_LEGPL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|53754212|emb|CAH15689.1| hypothetical protein lpl1449 [Legionella pneumophila str. Lens]
          Length = 336

 Score =  384 bits (987), Expect = e-105,   Method: Composition-based stats.
 Identities = 183/335 (54%), Positives = 243/335 (72%), Gaps = 1/335 (0%)

Query: 1   MMDREGLLSRN-VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S   +  EDA    +RP +L E+ GQ    S +++FI AA+ R + LDHVL 
Sbjct: 1   MLESDRLISSQSIVSEDAMDRAIRPLSLSEYVGQDSVSSQMQIFINAARKRNDPLDHVLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A E+GVN R TSGPVI +AGD+AA+LTNL+  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIIAHEMGVNIRQTSGPVIERAGDIAAILTNLQQNDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           ++EEILYPAMED++LD+M+GEGP+ARS+K+ L  FTLI ATTR GLLT+PL+DRFGI  R
Sbjct: 121 VIEEILYPAMEDYKLDIMIGEGPAARSIKLELPPFTLIGATTRAGLLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y ++ L  IV R A L G+    E A E+A+RSRGTPRIA RLLRRVRD++EV    
Sbjct: 181 LEYYSVDSLTQIVARSAHLLGVPTKPEGAREVALRSRGTPRIANRLLRRVRDYSEVKGNG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT ++A  AL  L +D+ GFD +D + L  +  +F GGPVGI++I+A + E +  IED+
Sbjct: 241 IITVDMAQQALEMLEVDQHGFDLMDRKLLLAVIEHFNGGPVGIDSIAAAIGEEKGTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           +EP++IQQGF+ RTPRGR+    A+QH G     +
Sbjct: 301 LEPFLIQQGFLMRTPRGRIATSKAYQHFGFSAIEQ 335


>gi|316932644|ref|YP_004107626.1| Holliday junction DNA helicase RuvB [Rhodopseudomonas palustris
           DX-1]
 gi|315600358|gb|ADU42893.1| Holliday junction DNA helicase RuvB [Rhodopseudomonas palustris
           DX-1]
          Length = 348

 Score =  384 bits (987), Expect = e-105,   Method: Composition-based stats.
 Identities = 229/334 (68%), Positives = 277/334 (82%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D   L++     +D   + LRP+ L EF GQ +A +NL+VFI+AA+ R EALDHVLFV
Sbjct: 1   MTDPSRLVTPERRGDDLGDAALRPQNLSEFVGQQQARANLQVFIDAARKRKEALDHVLFV 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ+VARELGV FR+TSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRLS  
Sbjct: 61  GPPGLGKTTLAQIVARELGVGFRATSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSPS 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDFQLDL++GEGP+ARSVKI+LS+FTL+ ATTR GLLTNPL+DRFGIP+RL
Sbjct: 121 VEEVLYPAMEDFQLDLIIGEGPAARSVKIDLSKFTLVGATTRAGLLTNPLRDRFGIPVRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           NFY I++L++IV+RGA++ G  +T++ A EIA R+RGTPRIAGRLLRRVRDFA  A A+ 
Sbjct: 181 NFYTIDELESIVRRGARVLGTPITNDGANEIARRARGTPRIAGRLLRRVRDFASHADAEA 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I R IAD AL  L +D  G D +D RYL+ IA N+GGGPVG+ET++A LSEPRDAIED+I
Sbjct: 241 IDRAIADHALQALEVDSAGLDAMDRRYLSTIALNYGGGPVGVETMAAALSEPRDAIEDII 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           EPY+IQ G++QRTPRGRLL   A++HLG+  P R
Sbjct: 301 EPYLIQCGYLQRTPRGRLLTDHAFRHLGLAAPSR 334


>gi|39934177|ref|NP_946453.1| Holliday junction DNA helicase RuvB [Rhodopseudomonas palustris
           CGA009]
 gi|47606089|sp|P61536|RUVB_RHOPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|39648025|emb|CAE26545.1| RuvB; Holliday branch migration protein [Rhodopseudomonas palustris
           CGA009]
          Length = 349

 Score =  384 bits (987), Expect = e-105,   Method: Composition-based stats.
 Identities = 232/334 (69%), Positives = 275/334 (82%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D   L++     +D   + LRP+ L EF GQ +A +NL+VFI+AA+ R EALDHVLFV
Sbjct: 1   MTDPSRLVTPERRGDDLGDAALRPQNLSEFVGQQQARANLQVFIDAARKRKEALDHVLFV 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ+VARELGV FR+TSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRLS  
Sbjct: 61  GPPGLGKTTLAQIVARELGVGFRATSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSPS 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDFQLDL++GEGP+ARSVKI+LS+FTL+ ATTR GLLTNPL+DRFGIPIRL
Sbjct: 121 VEEVLYPAMEDFQLDLIIGEGPAARSVKIDLSKFTLVGATTRAGLLTNPLRDRFGIPIRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           NFY IE+L++IV RGA++ G  +T + A EIA R+RGTPRIAGRLLRRVRDFA  A A+ 
Sbjct: 181 NFYTIEELESIVTRGARVLGTPITADGANEIARRARGTPRIAGRLLRRVRDFASAADAEA 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I R IAD AL  L +D  G D +D RYLT IA N+GGGPVG+ET++A LSEPRDAIED+I
Sbjct: 241 IDRAIADHALGALEVDSAGLDAMDRRYLTTIALNYGGGPVGVETMAAALSEPRDAIEDII 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           EPY+IQ G++QRTPRGRLL   A++HLG+  P R
Sbjct: 301 EPYLIQCGYLQRTPRGRLLTDHAFRHLGLAAPSR 334


>gi|91789932|ref|YP_550884.1| Holliday junction DNA helicase RuvB [Polaromonas sp. JS666]
 gi|122967369|sp|Q124Q6|RUVB_POLSJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|91699157|gb|ABE45986.1| Holliday junction DNA helicase RuvB [Polaromonas sp. JS666]
          Length = 354

 Score =  384 bits (987), Expect = e-105,   Method: Composition-based stats.
 Identities = 188/324 (58%), Positives = 238/324 (73%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           +     E+A    LRP+  +E+ GQ +    L++FI AAK R+EALDHVL  GPPGLGKT
Sbjct: 23  APASPHEEAIERALRPKLFDEYVGQAKVREQLEIFIGAAKKRSEALDHVLLFGPPGLGKT 82

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           TL+ ++A ELGVN R TSGPV+ K  DLAALLTNLE  DVLFIDEIHRLS +VEEILYPA
Sbjct: 83  TLSHIIAHELGVNLRQTSGPVLEKPKDLAALLTNLEKNDVLFIDEIHRLSPVVEEILYPA 142

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +ED+Q+D+M+GEGP+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  E+L
Sbjct: 143 LEDYQIDIMIGEGPAARSIKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTAEEL 202

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             IV+R A L    + +E   EIA RSRGTPRIA RLLRRVRD+A+V     IT +IA+ 
Sbjct: 203 GRIVRRSASLLNAPMDEEGGFEIARRSRGTPRIANRLLRRVRDYADVKGTGQITLDIANK 262

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL  L +D  GFD +D + L  +   F GGPVG++ I+A + E RD IED+IEPY+IQQG
Sbjct: 263 ALAMLDVDPQGFDVMDRKLLEAVIHRFDGGPVGLDNIAASIGEERDTIEDVIEPYLIQQG 322

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIP 332
           ++QRTPRGR+    A++HLG+  P
Sbjct: 323 YLQRTPRGRIATLAAYRHLGVAPP 346


>gi|192289702|ref|YP_001990307.1| Holliday junction DNA helicase RuvB [Rhodopseudomonas palustris
           TIE-1]
 gi|238692593|sp|B3QHS4|RUVB_RHOPT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|192283451|gb|ACE99831.1| Holliday junction DNA helicase RuvB [Rhodopseudomonas palustris
           TIE-1]
          Length = 349

 Score =  384 bits (986), Expect = e-105,   Method: Composition-based stats.
 Identities = 232/334 (69%), Positives = 275/334 (82%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D   L++     +D   + LRP+ L EF GQ +A +NL+VFI+AA+ R EALDHVLFV
Sbjct: 1   MTDPSRLVTPERRGDDLGDAALRPQNLSEFVGQQQARANLQVFIDAARKRKEALDHVLFV 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ+VARELGV FR+TSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRLS  
Sbjct: 61  GPPGLGKTTLAQIVARELGVGFRATSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSPS 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDFQLDL++GEGP+ARSVKI+LS+FTL+ ATTR GLLTNPL+DRFGIPIRL
Sbjct: 121 VEEVLYPAMEDFQLDLIIGEGPAARSVKIDLSKFTLVGATTRAGLLTNPLRDRFGIPIRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           NFY IE+L++IV RGA++ G  +T + A EIA R+RGTPRIAGRLLRRVRDFA  A A+ 
Sbjct: 181 NFYTIEELESIVTRGARVLGTPITADGANEIARRARGTPRIAGRLLRRVRDFASAADAEA 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I R IAD AL  L +D  G D +D RYLT IA N+GGGPVG+ET++A LSEPRDAIED+I
Sbjct: 241 IDRSIADHALGALEVDSAGLDAMDRRYLTTIALNYGGGPVGVETMAAALSEPRDAIEDII 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           EPY+IQ G++QRTPRGRLL   A++HLG+  P R
Sbjct: 301 EPYLIQCGYLQRTPRGRLLTDHAFRHLGLAAPSR 334


>gi|254374303|ref|ZP_04989785.1| holliday junction DNA helicase RuvB [Francisella novicida
           GA99-3548]
 gi|151572023|gb|EDN37677.1| holliday junction DNA helicase RuvB [Francisella novicida
           GA99-3548]
          Length = 348

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 198/336 (58%), Positives = 251/336 (74%), Gaps = 3/336 (0%)

Query: 1   MMDREGLLSRNVSQ---EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M++ + ++S N +Q   E+     +RP+TL E+ GQ      +++FI+AAKAR +ALDH 
Sbjct: 1   MIETDRIISANTTQTNDENVIDRAIRPKTLAEYEGQPAVREQMEIFIQAAKARKDALDHT 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTL+ ++A E+GV  + TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRL
Sbjct: 61  LIFGPPGLGKTTLSNIIANEMGVELKQTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           S +VEEILYPAMED+QLD+M+GEGP+ARS+KI+L  FTL+ ATTR GLLT+PL+DRFGI 
Sbjct: 121 SPVVEEILYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLVGATTRAGLLTSPLRDRFGII 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            RL FY I+DL  IV R AKL  L +T + A EIA RSRGTPRIA RLLRRVRD+A+V  
Sbjct: 181 QRLEFYSIDDLSKIVYRSAKLLNLDITTDGAIEIAKRSRGTPRIANRLLRRVRDYAQVKG 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
           +  I  EIAD AL  L +D +GFD +D RYL  +   F GGPVG++T+SA LSE +  IE
Sbjct: 241 SGVICFEIADKALSMLKVDPIGFDHMDHRYLLTLMEKFAGGPVGLDTMSAALSEEKGTIE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           D+IEPY+IQQG+I RT RGR+   +A+ H  + IP 
Sbjct: 301 DVIEPYLIQQGYIMRTARGRIATLLAYNHFKLKIPD 336


>gi|39996179|ref|NP_952130.1| Holliday junction DNA helicase RuvB [Geobacter sulfurreducens PCA]
 gi|47606085|sp|P61532|RUVB_GEOSL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|39982944|gb|AAR34403.1| Holliday junction DNA helicase RuvB [Geobacter sulfurreducens PCA]
 gi|298505193|gb|ADI83916.1| Holliday junction DNA helicase RuvB [Geobacter sulfurreducens
           KN400]
          Length = 338

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 190/327 (58%), Positives = 243/327 (74%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
             +S   + +D   S LRPR LE++ GQ +A  NL+VFI+AA+ R EALDHVL  GPPGL
Sbjct: 4   RTISPEKTDDDYVESSLRPRALEDYIGQEKAKGNLRVFIDAARKRGEALDHVLLYGPPGL 63

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLA ++A E+GVN +STSGPVI + GDLAA+LTNLE  DVLFIDEIHRLS +VEEIL
Sbjct: 64  GKTTLANIIACEMGVNIKSTSGPVIERPGDLAAILTNLEPHDVLFIDEIHRLSHVVEEIL 123

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           YPAMEDFQLD+++G+GPSAR++K++L RFTL+ ATTR GLL++PL+DRFG+  RL FY  
Sbjct: 124 YPAMEDFQLDIIIGQGPSARTIKLDLPRFTLVGATTRAGLLSSPLRDRFGVISRLEFYTD 183

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
            +L TIV R A +  + +  + A E+A RSRGTPRIA RLLRRVRDFA+V     I+ ++
Sbjct: 184 AELSTIVTRSAHILDIQIEPDGARELARRSRGTPRIANRLLRRVRDFAQVRADGVISAQV 243

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
            D +L  L ID+ GFDQ+D   +  I   FGGGPVG++TI+A + E RD IED+ EP++I
Sbjct: 244 VDESLKLLEIDEKGFDQMDRTIMLTIIDKFGGGPVGLDTIAAAIGEERDTIEDVYEPFLI 303

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           Q GFI RTPRGR+    A++H G   P
Sbjct: 304 QHGFINRTPRGRVATKSAYEHFGRIAP 330


>gi|264680419|ref|YP_003280329.1| Holliday junction DNA helicase RuvB [Comamonas testosteroni CNB-2]
 gi|262210935|gb|ACY35033.1| Holliday junction DNA helicase RuvB [Comamonas testosteroni CNB-2]
          Length = 364

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 194/329 (58%), Positives = 241/329 (73%), Gaps = 2/329 (0%)

Query: 6   GLLSRNVSQ--EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
            ++S   S   E+A    LRP+ L+E+ GQ +A   L++FI AAK R+EALDHVL  GPP
Sbjct: 31  RMVSAGHSSQGEEALERALRPKQLDEYVGQAKAREQLEIFIGAAKKRSEALDHVLLFGPP 90

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTL+ ++A ELGVN R TSGPV+ K  DLAALLTNLE  DVLFIDEIHRLS +VEE
Sbjct: 91  GLGKTTLSHIIAAELGVNLRQTSGPVLEKPKDLAALLTNLEPNDVLFIDEIHRLSPVVEE 150

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILYPA+ED+Q+D+M+GEGP+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY
Sbjct: 151 ILYPALEDYQIDIMIGEGPAARSIKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFY 210

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
             E+L  IV+R A L    +  E   EIA RSRGTPRIA RLLRRVRD+A+V     ITR
Sbjct: 211 TSEELSRIVRRSAGLLNAPIDAEGCFEIARRSRGTPRIANRLLRRVRDYADVKGDGRITR 270

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           EIAD AL  L +D  GFD +D + L  +   F GGPVG++ I+A + E    IED+IEPY
Sbjct: 271 EIADKALAMLDVDPQGFDIMDRKLLEAVVHRFDGGPVGLDNIAASIGEESGTIEDVIEPY 330

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           +IQQGF+QRTPRGR+    A++HLG+  P
Sbjct: 331 LIQQGFLQRTPRGRMATQAAYRHLGLQPP 359


>gi|319795911|ref|YP_004157551.1| holliday junction DNA helicase ruvb [Variovorax paradoxus EPS]
 gi|315598374|gb|ADU39440.1| Holliday junction DNA helicase RuvB [Variovorax paradoxus EPS]
          Length = 354

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 188/324 (58%), Positives = 236/324 (72%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           +     E+A    LRP+ L+E+ GQ +    L++FI AA+ R EALDHVL  GPPGLGKT
Sbjct: 19  APASPNEEAIERALRPKLLDEYVGQAKVREQLEIFIGAARKRKEALDHVLLFGPPGLGKT 78

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           TL+ ++A ELGVN R TSGPV+ K  DLAALLTNLE  DVLFIDEIHRLS +VEEILYPA
Sbjct: 79  TLSHIIAAELGVNLRQTSGPVLEKPKDLAALLTNLEPNDVLFIDEIHRLSPVVEEILYPA 138

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +ED+Q+D+M+GEGP+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  E+L
Sbjct: 139 LEDYQIDIMIGEGPAARSIKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTPEEL 198

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             IV R A+L  +   D    EIA RSRGTPRIA RLLRRVRD+AEV     IT +IA  
Sbjct: 199 ALIVTRSARLLKVETDDTGGFEIARRSRGTPRIANRLLRRVRDYAEVKGNGRITEDIAHK 258

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E RD IED+IEPY+IQQG
Sbjct: 259 ALAMLDVDPQGFDLMDRKLLEAVIHRFDGGPVGLDNVAASIGEERDTIEDVIEPYLIQQG 318

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIP 332
           ++QRTPRGR+    A++HLG+  P
Sbjct: 319 YLQRTPRGRIATLAAYRHLGVTPP 342


>gi|289422378|ref|ZP_06424224.1| holliday junction DNA helicase RuvB [Peptostreptococcus anaerobius
           653-L]
 gi|289157213|gb|EFD05832.1| holliday junction DNA helicase RuvB [Peptostreptococcus anaerobius
           653-L]
          Length = 338

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 181/333 (54%), Positives = 251/333 (75%), Gaps = 1/333 (0%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD E +++  + +ED +I   LRP++L+++ GQ ++   L++FI+AA  R EALDHVL  
Sbjct: 1   MDEERIITSTMKEEDFEIENSLRPKSLDDYLGQEKSKEQLRIFIDAALNRNEALDHVLLY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A E+GVN R TSGP I +AGDLAA+LTNL++ DVLFIDEIHR++  
Sbjct: 61  GPPGLGKTTLAGIIANEMGVNLRITSGPAIERAGDLAAILTNLQENDVLFIDEIHRINRS 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMED  LD+++G+GPSARS++++L +FTLI ATTR G+LTNPL+DRFG+ ++L
Sbjct: 121 VEEVLYPAMEDNCLDIIIGKGPSARSIRLDLPKFTLIGATTRAGMLTNPLRDRFGVILKL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           ++Y  E+L  IV+R + + G  + DE A +IA RSRGTPRIA RLL+RVRDFA+V     
Sbjct: 181 DYYNEEELAEIVKRSSSILGAGIQDEGAIQIASRSRGTPRIANRLLKRVRDFAQVRADGQ 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           IT ++A  AL  + +D +G D +D + LT I   F GGPVG++T++A + E R+ IED+ 
Sbjct: 241 ITDDVAVDALDLIGVDSLGLDFVDNKLLTTIIDKFRGGPVGLDTLAASIGEDRNTIEDVY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY++Q GFI R PRGR+ MP A++HLG+  P 
Sbjct: 301 EPYLLQLGFINRAPRGRIAMPRAYEHLGMPYPQ 333


>gi|225075205|ref|ZP_03718404.1| hypothetical protein NEIFLAOT_00205 [Neisseria flavescens
           NRL30031/H210]
 gi|224953380|gb|EEG34589.1| hypothetical protein NEIFLAOT_00205 [Neisseria flavescens
           NRL30031/H210]
          Length = 343

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 197/329 (59%), Positives = 248/329 (75%), Gaps = 2/329 (0%)

Query: 5   EGLLSRN--VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           + +++     +QE+     LRP+TL+++ GQ +A   L +FI+AAK R EALDH L  GP
Sbjct: 13  QRIITAQNISAQEELLERALRPKTLDDYIGQDKAKEQLAIFIQAAKKRGEALDHTLLFGP 72

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++A+ELGVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VE
Sbjct: 73  PGLGKTTLAHIIAKELGVNLRQTSGPVLERAGDLAALLTNLEPHDVLFIDEIHRLSPVVE 132

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILYPA+ED+QLD+M+GEGP+ARSVKI+L  FTL+ ATTR G+LTNPL+DRFGI  RL F
Sbjct: 133 EILYPALEDYQLDIMIGEGPAARSVKIDLPPFTLVGATTRAGMLTNPLRDRFGIVSRLEF 192

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y+ +DL TIV R A+L  L + DE A E+A RSRGTPRIA RLLRRVRD+A+V +   I 
Sbjct: 193 YQNKDLATIVARSAQLLQLDMGDEGAMEVAKRSRGTPRIANRLLRRVRDYADVKNNGVID 252

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            EIADAAL  L +D  G D +D ++L  I   F GGPVG+E ++A + E  D IED+IEP
Sbjct: 253 AEIADAALSMLDVDVQGLDVMDRKFLEAILHKFSGGPVGLENVAAAIGESTDTIEDVIEP 312

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           Y+IQQGF+QRTPRGR+    A+ H G+ +
Sbjct: 313 YLIQQGFLQRTPRGRVATERAYLHFGLKV 341


>gi|221064963|ref|ZP_03541068.1| Holliday junction DNA helicase RuvB [Comamonas testosteroni KF-1]
 gi|220709986|gb|EED65354.1| Holliday junction DNA helicase RuvB [Comamonas testosteroni KF-1]
          Length = 365

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 192/318 (60%), Positives = 238/318 (74%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E+A    LRP+ L+E+ GQ +A   L++FI AAK R+EALDHVL  GPPGLGKTTL+ ++
Sbjct: 42  EEALERALRPKQLDEYVGQAKAREQLEIFISAAKKRSEALDHVLLFGPPGLGKTTLSHII 101

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A ELGVN R TSGPV+ K  DLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+Q+
Sbjct: 102 AAELGVNLRQTSGPVLEKPKDLAALLTNLEPNDVLFIDEIHRLSPVVEEILYPALEDYQI 161

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D+M+GEGP+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  E+L  IV+R
Sbjct: 162 DIMIGEGPAARSIKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYSSEELSRIVKR 221

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A L    + +E   EIA RSRGTPRIA RLLRRVRD+A+V     ITREIAD AL  L 
Sbjct: 222 SAGLLNAPIDEEGCFEIARRSRGTPRIANRLLRRVRDYADVKGDGRITREIADKALAMLD 281

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D  GFD +D + L  +   F GGPVG++ I+A + E    IED+IEPY+IQQGF+QRTP
Sbjct: 282 VDPQGFDIMDRKLLEAVVHRFDGGPVGLDNIAASIGEESGTIEDVIEPYLIQQGFLQRTP 341

Query: 315 RGRLLMPIAWQHLGIDIP 332
           RGR+    A++HLG+  P
Sbjct: 342 RGRMATQAAYRHLGLQAP 359


>gi|86751372|ref|YP_487868.1| Holliday junction DNA helicase RuvB [Rhodopseudomonas palustris
           HaA2]
 gi|123098275|sp|Q2IS53|RUVB_RHOP2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|86574400|gb|ABD08957.1| Holliday junction DNA helicase subunit RuvB [Rhodopseudomonas
           palustris HaA2]
          Length = 348

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 231/334 (69%), Positives = 276/334 (82%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D   L++     +D   + LRP+ L EF GQ +A +NL+VFI+AA+ R EALDHVLFV
Sbjct: 1   MTDPSRLVTPERRGDDLGDAALRPQNLSEFVGQEKARANLQVFIDAARKRKEALDHVLFV 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ+VARELGV FR+TSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRLS  
Sbjct: 61  GPPGLGKTTLAQIVARELGVGFRATSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSPA 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDFQLDL++GEGP+ARSVKI LS+FTL+ ATTR GLLTNPL+DRFGIP+RL
Sbjct: 121 VEEVLYPAMEDFQLDLIIGEGPAARSVKIELSKFTLVGATTRAGLLTNPLRDRFGIPVRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           NFY IE+L++IV RGA++ G  +T + A EIA R+RGTPRIAGRLLRRVRDFA  A A+ 
Sbjct: 181 NFYTIEELESIVSRGARVLGTGITADGANEIARRARGTPRIAGRLLRRVRDFASAADAEA 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I R+IAD AL  L +D  G D +D RYL+ IA N+GGGPVG+ET++A LSEPRDAIED+I
Sbjct: 241 IDRKIADHALGALEVDAAGLDAMDRRYLSTIALNYGGGPVGVETMAAALSEPRDAIEDII 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           EPY+IQ G++QRTPRGRLL P A++HLG+  P R
Sbjct: 301 EPYLIQCGYLQRTPRGRLLTPHAFKHLGLAEPSR 334


>gi|238693244|sp|B4RTT8|RUVB_ALTMD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
          Length = 334

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 189/334 (56%), Positives = 248/334 (74%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L++   S ED  I   +RP+ LE++TGQ   C  +++FI+AA+ R +ALDH+L 
Sbjct: 1   MIEADRLITPEASTEDEVIDRAIRPKMLEDYTGQPHVCEQMEIFIQAARNRDDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN ++TSGPV+ KAGDLAALLTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNIKTTSGPVLEKAGDLAALLTNLERNDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY ++DL +IV R A    L + +E A E+A RSRGTPRIA RLLRRVRD+AE+    
Sbjct: 181 LEFYNVKDLTSIVARSASYLNLEMNEEGAQEVARRSRGTPRIANRLLRRVRDYAEIKSDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           T+  E A  AL  L +DK GFD +D + L+ I   F GGPVG++ ++A + E ++ IED+
Sbjct: 241 TVGAETAAKALDMLDVDKEGFDYMDRKLLSAIIEKFDGGPVGLDNLAAAIGEEKETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           IEP++IQQGF+QRTPRGR++   A+ H G     
Sbjct: 301 IEPFLIQQGFLQRTPRGRIVSQRAYLHFGFTPSE 334


>gi|304407533|ref|ZP_07389185.1| Holliday junction DNA helicase RuvB [Paenibacillus curdlanolyticus
           YK9]
 gi|304343484|gb|EFM09326.1| Holliday junction DNA helicase RuvB [Paenibacillus curdlanolyticus
           YK9]
          Length = 336

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 193/332 (58%), Positives = 248/332 (74%), Gaps = 1/332 (0%)

Query: 2   MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M+ E ++S N+  ED  + L LRPR L E+ GQ     NLKVFIEAAK R EALDHVL  
Sbjct: 1   MEDERIISANLMMEDQAVELSLRPRYLAEYIGQSNVKENLKVFIEAAKLRKEALDHVLLY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTL+ ++A ELGV+ R+TSGP I + GDLAALLTNL++ DVLFIDEIHRL+  
Sbjct: 61  GPPGLGKTTLSNIIANELGVSLRTTSGPAIERPGDLAALLTNLQEGDVLFIDEIHRLNRS 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDF LD+M+G+GPSARSV+++L  FTLI ATTR GLL+ PL+DRFG+  RL
Sbjct: 121 VEEVLYPAMEDFALDIMIGKGPSARSVRLDLPPFTLIGATTRAGLLSAPLRDRFGVVSRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y+ ++L  IV R + + G+++  EAA EIA+RSRGTPRIA RLL+RVRDFA+V     
Sbjct: 181 EYYKTDELAFIVSRASDILGVSIVGEAATEIALRSRGTPRIANRLLKRVRDFAQVRGDGI 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           IT E+A  AL  L +D MG D +D + L  +  +F GGPVG++TI+A + E    IED+ 
Sbjct: 241 ITHELARYALELLRVDPMGLDAIDHKMLRAMIESFRGGPVGLDTIAATIGEESQTIEDVY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EPY++Q G +QRTPRGR+  P A++HLGI +P
Sbjct: 301 EPYLMQVGLLQRTPRGRIATPQAYRHLGIPVP 332


>gi|260437053|ref|ZP_05790869.1| holliday junction DNA helicase RuvB [Butyrivibrio crossotus DSM
           2876]
 gi|292810362|gb|EFF69567.1| holliday junction DNA helicase RuvB [Butyrivibrio crossotus DSM
           2876]
          Length = 333

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 177/332 (53%), Positives = 234/332 (70%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MDR  + +   S++    + LRP +L+E+ GQ     NLKVFIEAAK+R E+LDH LF G
Sbjct: 1   MDRRIITTEFTSEDVKIENNLRPSSLDEYIGQTAIKENLKVFIEAAKSRNESLDHCLFYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA V+A E+GVN + TSGP I K GD+AA+L NL D D+LFIDEIHRL+  V
Sbjct: 61  PPGLGKTTLAGVIAAEMGVNIKVTSGPTIEKPGDMAAILNNLSDGDILFIDEIHRLNRQV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMEDF +D+M+G+G +ARS++++L  FTL+ ATTR GLLT PL+DRFG+  RL 
Sbjct: 121 EEVLYPAMEDFAIDIMIGKGQTARSIRLDLPHFTLVGATTRAGLLTAPLRDRFGVVNRLE 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y I++LK I+ R A +    +  + A E+A RSRGTPR+A RLL+RVRDFA+V +   I
Sbjct: 181 YYTIDELKNIIIRSAGVLKAPIDKDGATELARRSRGTPRLANRLLKRVRDFAQVKYDGII 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           TRE+ D +L  L +DK G D+ D   L  I   +GGGPVG++T++A L E    +ED+ E
Sbjct: 241 TREVVDYSLDLLEVDKEGLDKNDRNILFTIIEKYGGGPVGLDTLAASLGEDAGTLEDVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           PY+I  GFI RTPRGR++    + H GI    
Sbjct: 301 PYLIFNGFINRTPRGRMVTEHCYNHFGIRPTQ 332


>gi|52841806|ref|YP_095605.1| Holliday junction DNA helicase RuvB [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52628917|gb|AAU27658.1| Holliday junction DNA helicase RuvB [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 343

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 184/335 (54%), Positives = 243/335 (72%), Gaps = 1/335 (0%)

Query: 1   MMDREGLLSRN-VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S   +  EDA    +RP +L E+ GQ    S +++FI AA+ R + LDHVL 
Sbjct: 8   MLESDRLISSQSIVSEDAMDRAIRPLSLSEYVGQDSVSSQMQIFINAARKRNDPLDHVLI 67

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A E+GVN R TSGPVI +AGD+AA+LTNL+  DVLFIDEIHRLS 
Sbjct: 68  FGPPGLGKTTLANIIAHEMGVNIRQTSGPVIERAGDIAAILTNLQQNDVLFIDEIHRLSP 127

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           ++EEILYPAMED++LD+M+GEGP+ARS+K+ L  FTLI ATTR GLLT+PL+DRFGI  R
Sbjct: 128 VIEEILYPAMEDYKLDIMIGEGPAARSIKLELPPFTLIGATTRAGLLTSPLRDRFGIVQR 187

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y ++ L  IV R A L G+    E A EIA+RSRGTPRIA RLLRRVRD++EV    
Sbjct: 188 LEYYSVDSLTQIVARSAHLLGVPTKPEGAREIALRSRGTPRIANRLLRRVRDYSEVKGNG 247

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT ++A  AL  L +D+ GFD +D + L  +  +F GGPVGI++I+A + E +  IED+
Sbjct: 248 IITVDMAQQALEMLEVDQHGFDLMDRKLLLAVIEHFNGGPVGIDSIAAAIGEEKGTIEDV 307

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           +EP++IQQGF+ RTPRGR+    A+QH G     +
Sbjct: 308 LEPFLIQQGFLMRTPRGRIATSKAYQHFGFSAIEQ 342


>gi|228948134|ref|ZP_04110418.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228811492|gb|EEM57829.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
          Length = 333

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 189/333 (56%), Positives = 247/333 (74%), Gaps = 2/333 (0%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD E LLS   + EDAD+   LRP+TL ++ GQ +A  NL+VFIEAAK R E LDHVL  
Sbjct: 1   MD-ERLLSGEFAYEDADLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLLY 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT+L+  DVLFIDEIHRL   
Sbjct: 60  GPPGLGKTTLANIIANEMGVNVRTTSGPAIERPGDLAAVLTSLQPGDVLFIDEIHRLHRS 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EE+LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTR G L+ PL+DRFG+  RL
Sbjct: 120 IEEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y ++ L  IV+R A++  + +   AA EIA R+RGTPRIA RLLRRVRDFA+V    T
Sbjct: 180 EYYTVDQLSAIVERTAEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRGNGT 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +T EI   AL  L +DK+G D +D + L  I   F GGPVG+ET+SA + E    IED+ 
Sbjct: 240 VTMEITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSATIGEESHTIEDVY 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY++Q GF+QRTPRGR++ P+A++H G+++P 
Sbjct: 300 EPYLLQIGFLQRTPRGRIVTPLAYEHFGMEMPK 332


>gi|241758900|ref|ZP_04757013.1| holliday junction DNA helicase RuvB [Neisseria flavescens SK114]
 gi|241321108|gb|EER57321.1| holliday junction DNA helicase RuvB [Neisseria flavescens SK114]
          Length = 343

 Score =  384 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 196/329 (59%), Positives = 248/329 (75%), Gaps = 2/329 (0%)

Query: 5   EGLLSRN--VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           + +++     +QE+     LRP+TL+++ GQ +A   L +FI+AAK R EALDH L  GP
Sbjct: 13  QRIITAQNISAQEELLERALRPKTLDDYIGQDKAKEQLAIFIQAAKKRGEALDHTLLFGP 72

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++A+ELGVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VE
Sbjct: 73  PGLGKTTLAHIIAKELGVNLRQTSGPVLERAGDLAALLTNLEPHDVLFIDEIHRLSPVVE 132

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILYPA+ED+QLD+M+GEGP+ARSVKI+L  FTL+ ATTR G+LTNPL+DRFGI  RL F
Sbjct: 133 EILYPALEDYQLDIMIGEGPAARSVKIDLPPFTLVGATTRAGMLTNPLRDRFGIVSRLEF 192

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y+ +DL TIV R A+L  L + DE A E+A RSRGTPRIA RLLRRVRD+A+V +   I 
Sbjct: 193 YQNKDLATIVARSAQLLQLDMGDEGAMEVAKRSRGTPRIANRLLRRVRDYADVKNNGVID 252

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            EIA+AAL  L +D  G D +D ++L  I   F GGPVG+E ++A + E  D IED+IEP
Sbjct: 253 AEIANAALSMLDVDGQGLDVMDRKFLEAILHKFSGGPVGLENVAAAIGESTDTIEDVIEP 312

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           Y+IQQGF+QRTPRGR+    A+ H G+ +
Sbjct: 313 YLIQQGFLQRTPRGRVATERAYLHFGLKV 341


>gi|42783551|ref|NP_980798.1| Holliday junction DNA helicase RuvB [Bacillus cereus ATCC 10987]
 gi|206976061|ref|ZP_03236971.1| Holliday junction DNA helicase RuvB [Bacillus cereus H3081.97]
 gi|217961911|ref|YP_002340481.1| Holliday junction DNA helicase RuvB [Bacillus cereus AH187]
 gi|229141159|ref|ZP_04269700.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           BDRD-ST26]
 gi|47606081|sp|P61528|RUVB_BACC1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|226725453|sp|B7HQH9|RUVB_BACC7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|42739480|gb|AAS43406.1| Holliday junction DNA helicase RuvB [Bacillus cereus ATCC 10987]
 gi|206745813|gb|EDZ57210.1| Holliday junction DNA helicase RuvB [Bacillus cereus H3081.97]
 gi|217063448|gb|ACJ77698.1| Holliday junction DNA helicase RuvB [Bacillus cereus AH187]
 gi|228642322|gb|EEK98612.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           BDRD-ST26]
          Length = 333

 Score =  384 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 189/333 (56%), Positives = 247/333 (74%), Gaps = 2/333 (0%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD E LLS   + EDAD+   LRP+TL ++ GQ +A  NL+VFIEAAK R E LDHVL  
Sbjct: 1   MD-ERLLSGESAYEDADLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLLY 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT+L+  DVLFIDEIHRL   
Sbjct: 60  GPPGLGKTTLANIIANEMGVNVRTTSGPAIERPGDLAAVLTSLQPGDVLFIDEIHRLHRS 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EE+LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTR G L+ PL+DRFG+  RL
Sbjct: 120 IEEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y ++ L  IV+R A++  + +   AA EIA R+RGTPRIA RLLRRVRDFA+V    T
Sbjct: 180 EYYTVDQLSEIVERTAEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRGNGT 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +T EI   AL  L +DK+G D +D + L  I   F GGPVG+ET+SA + E    IED+ 
Sbjct: 240 VTMEITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSATIGEESHTIEDVY 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY++Q GF+QRTPRGR++ P+A++H G+++P 
Sbjct: 300 EPYLLQIGFLQRTPRGRIVTPLAYEHFGMEMPK 332


>gi|221134419|ref|ZP_03560724.1| Holliday junction DNA helicase RuvB [Glaciecola sp. HTCC2999]
          Length = 337

 Score =  384 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 188/332 (56%), Positives = 247/332 (74%), Gaps = 1/332 (0%)

Query: 1   MMDREGLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+  +   +D A    +RP+TL ++TGQ   C  + +FIEAA+ R +ALDHVL 
Sbjct: 1   MIEEDRLIQASAKNDDEAVDRAIRPKTLADYTGQDHVCEQMSIFIEAARKRTDALDHVLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A E+ VN ++TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIIANEMDVNIKTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+K++L+ FTL+ ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKLDLAPFTLVGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY IEDL  I+ R AK   + +  E A EIA R+RGTPRIA RLLRRVRD+AE+    
Sbjct: 181 LEFYNIEDLTDIIMRSAKYLNVEMVTEGALEIAKRARGTPRIANRLLRRVRDYAEIKSNG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           T+   IA  AL  L +DK+GFD +D + L  I   F GGPVG++ ++A + E ++ IED+
Sbjct: 241 TVDEHIAALALDMLDVDKVGFDYMDRKLLEAIIDKFDGGPVGLDNLAAAIGEEKETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           IEP++IQQGF+QRTPRGR+    A++HLG   
Sbjct: 301 IEPFLIQQGFLQRTPRGRIASNRAYEHLGFQP 332


>gi|225374902|ref|ZP_03752123.1| hypothetical protein ROSEINA2194_00525 [Roseburia inulinivorans DSM
           16841]
 gi|225213285|gb|EEG95639.1| hypothetical protein ROSEINA2194_00525 [Roseburia inulinivorans DSM
           16841]
          Length = 330

 Score =  384 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 171/328 (52%), Positives = 244/328 (74%), Gaps = 1/328 (0%)

Query: 4   REGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
            + ++S  V  ED  I   LRP+TL+++ GQ +A  NLKV+IEAAK R E+LDHVLF GP
Sbjct: 2   EKRVISTQVQDEDIKIEKNLRPQTLDDYIGQQKAKKNLKVYIEAAKQRGESLDHVLFFGP 61

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++A E+G + + TSGP I K G++AA+L+NL++ D+LF+DEIHRL+  VE
Sbjct: 62  PGLGKTTLAGIIANEMGTHMKITSGPAIGKPGEMAAILSNLQEGDILFVDEIHRLNRQVE 121

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMED+ +D+M+G+G +ARS++++L +FTL+ ATTR GLL+ PL+DRFG+   L F
Sbjct: 122 EVLYPAMEDYVIDIMIGKGATARSIRLDLPKFTLVGATTRAGLLSAPLRDRFGVIHHLEF 181

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y +++LKTI+   ++  G+ + ++ A E+A RSRGTPR+A RLL+RVRDFAEV +   IT
Sbjct: 182 YTVDELKTIIIHSSEKLGVEIDEDGAYELARRSRGTPRLANRLLKRVRDFAEVKYDGRIT 241

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           +++A  AL  L +DK G DQ D   L  I   F GGPVG++T++A + E    IED+ EP
Sbjct: 242 KDVASFALDLLEVDKFGLDQNDRNILMTIIEKFQGGPVGLDTLAASIGEDSGTIEDVYEP 301

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           Y++Q GF+ RTP+GR++  +A+QH GI+
Sbjct: 302 YLVQNGFVIRTPKGRMVTDLAYQHFGIE 329


>gi|332993888|gb|AEF03943.1| Holliday junction DNA helicase RuvB [Alteromonas sp. SN2]
          Length = 334

 Score =  384 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 188/332 (56%), Positives = 247/332 (74%), Gaps = 1/332 (0%)

Query: 1   MMDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L++ + S ED  I   +RP+ L+++TGQ   C  +++FI+AA+ R +ALDH+L 
Sbjct: 1   MIEADRLITPDASTEDEVIDRAIRPKMLDDYTGQPHVCEQMEIFIQAARKRDDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+ V+ ++TSGPV+ KAGDLAALLTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMDVSIKTTSGPVLEKAGDLAALLTNLERNDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY ++DL TIV R A    L ++ E A EIA RSRGTPRIA RLLRRVRD+AE+    
Sbjct: 181 LEFYSVKDLTTIVARSASYLNLDMSSEGAQEIARRSRGTPRIANRLLRRVRDYAEIKSDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           T+  E A  AL  L +DK GFD +D + L  I   F GGPVG++ ++A + E ++ IED+
Sbjct: 241 TVGVETAAKALDMLDVDKEGFDYMDRKLLCAIIEKFDGGPVGLDNLAAAIGEEKETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           IEP++IQQGF+QRTPRGR++   A+ H G   
Sbjct: 301 IEPFLIQQGFLQRTPRGRIVSQRAYLHFGFTP 332


>gi|17986617|ref|NP_539251.1| Holliday junction DNA helicase RuvB [Brucella melitensis bv. 1 str.
           16M]
 gi|225853158|ref|YP_002733391.1| Holliday junction DNA helicase RuvB [Brucella melitensis ATCC
           23457]
 gi|256045312|ref|ZP_05448206.1| Holliday junction DNA helicase RuvB [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256114270|ref|ZP_05455015.1| Holliday junction DNA helicase RuvB [Brucella melitensis bv. 3 str.
           Ether]
 gi|256263351|ref|ZP_05465883.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella
           melitensis bv. 2 str. 63/9]
 gi|260565797|ref|ZP_05836280.1| Holliday junction ATP-dependent DNA helicase ruvB [Brucella
           melitensis bv. 1 str. 16M]
 gi|265991737|ref|ZP_06104294.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|265995574|ref|ZP_06108131.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella
           melitensis bv. 3 str. Ether]
 gi|20140058|sp|Q8YIV5|RUVB_BRUME RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|254767415|sp|C0REW5|RUVB_BRUMB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|17982230|gb|AAL51515.1| holliday junction DNA helicase ruvb [Brucella melitensis bv. 1 str.
           16M]
 gi|225641523|gb|ACO01437.1| Holliday junction DNA helicase RuvB [Brucella melitensis ATCC
           23457]
 gi|260151170|gb|EEW86265.1| Holliday junction ATP-dependent DNA helicase ruvB [Brucella
           melitensis bv. 1 str. 16M]
 gi|262766858|gb|EEZ12476.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella
           melitensis bv. 3 str. Ether]
 gi|263002693|gb|EEZ15096.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|263093350|gb|EEZ17419.1| holliday junction ATP-dependent DNA helicase ruvB [Brucella
           melitensis bv. 2 str. 63/9]
 gi|326409715|gb|ADZ66780.1| Holliday junction DNA helicase RuvB [Brucella melitensis M28]
 gi|326539422|gb|ADZ87637.1| holliday junction DNA helicase RuvB [Brucella melitensis M5-90]
          Length = 346

 Score =  384 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 240/332 (72%), Positives = 283/332 (85%), Gaps = 2/332 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M DR  L+  +   ++   + LRP+TL++F GQ  A +NLKVFIEAAK R EALDHVLFV
Sbjct: 1   MSDRNPLIDADRRADE--DNTLRPQTLDDFVGQAAARANLKVFIEAAKVRGEALDHVLFV 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++A+ELGVNFRSTSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRLS  
Sbjct: 59  GPPGLGKTTLAQIMAKELGVNFRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSPA 118

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILYPAMEDFQLDL++GEGP+ARSVKI+L++FTL+AATTR+GLLT PL+DRFGIP+RL
Sbjct: 119 VEEILYPAMEDFQLDLIIGEGPAARSVKIDLAKFTLVAATTRLGLLTTPLRDRFGIPVRL 178

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           NFY +E+L+ IV+RGA++  + ++ + A E+A RSRGTPRI GRLLRRVRDFA VA A  
Sbjct: 179 NFYTVEELEYIVRRGARIMQMGISSDGAREVARRSRGTPRIVGRLLRRVRDFALVAGADI 238

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I R IAD AL RL +D  G DQLD RYL +IARNFGGGPVGIETI+AGLSEPRDAIED+I
Sbjct: 239 IDRRIADEALSRLEVDNRGLDQLDRRYLNIIARNFGGGPVGIETIAAGLSEPRDAIEDII 298

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EPY+IQQGF+QRTPRGR+L  +AWQHLG+  P
Sbjct: 299 EPYLIQQGFLQRTPRGRVLTAVAWQHLGLPAP 330


>gi|284799750|ref|ZP_05984763.2| holliday junction DNA helicase RuvB [Neisseria subflava NJ9703]
 gi|284797037|gb|EFC52384.1| holliday junction DNA helicase RuvB [Neisseria subflava NJ9703]
          Length = 351

 Score =  384 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 197/329 (59%), Positives = 248/329 (75%), Gaps = 2/329 (0%)

Query: 5   EGLLSRN--VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           + +++     +QE+     LRP+TL+++ GQ +A   L +FI+AAK R EALDH L  GP
Sbjct: 21  QRIITAQNISAQEELLERALRPKTLDDYIGQDKAKEQLAIFIQAAKKRGEALDHTLLFGP 80

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++A+ELGVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VE
Sbjct: 81  PGLGKTTLAHIIAKELGVNLRQTSGPVLERAGDLAALLTNLEPHDVLFIDEIHRLSPVVE 140

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILYPA+ED+QLD+M+GEGP+ARSVKI+L  FTL+ ATTR G+LTNPL+DRFGI  RL F
Sbjct: 141 EILYPALEDYQLDIMIGEGPAARSVKIDLPPFTLVGATTRAGMLTNPLRDRFGIVSRLEF 200

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y+ +DL TIV R A+L  L + DE A E+A RSRGTPRIA RLLRRVRD+A+V +   I 
Sbjct: 201 YQNKDLATIVARSAQLLQLDMGDEGAMEVAKRSRGTPRIANRLLRRVRDYADVKNNGVID 260

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            EIADAAL  L +D  G D +D ++L  I   F GGPVG+E ++A + E  D IED+IEP
Sbjct: 261 AEIADAALSMLDVDGQGLDVMDRKFLEAILHKFSGGPVGLENVAAAIGESTDTIEDVIEP 320

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           Y+IQQGF+QRTPRGR+    A+ H G+ +
Sbjct: 321 YLIQQGFLQRTPRGRVATERAYLHFGLKV 349


>gi|60407080|sp|Q5ZV64|RUVB_LEGPH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
          Length = 336

 Score =  384 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 184/335 (54%), Positives = 243/335 (72%), Gaps = 1/335 (0%)

Query: 1   MMDREGLLSRN-VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S   +  EDA    +RP +L E+ GQ    S +++FI AA+ R + LDHVL 
Sbjct: 1   MLESDRLISSQSIVSEDAMDRAIRPLSLSEYVGQDSVSSQMQIFINAARKRNDPLDHVLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A E+GVN R TSGPVI +AGD+AA+LTNL+  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIIAHEMGVNIRQTSGPVIERAGDIAAILTNLQQNDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           ++EEILYPAMED++LD+M+GEGP+ARS+K+ L  FTLI ATTR GLLT+PL+DRFGI  R
Sbjct: 121 VIEEILYPAMEDYKLDIMIGEGPAARSIKLELPPFTLIGATTRAGLLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y ++ L  IV R A L G+    E A EIA+RSRGTPRIA RLLRRVRD++EV    
Sbjct: 181 LEYYSVDSLTQIVARSAHLLGVPTKPEGAREIALRSRGTPRIANRLLRRVRDYSEVKGNG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT ++A  AL  L +D+ GFD +D + L  +  +F GGPVGI++I+A + E +  IED+
Sbjct: 241 IITVDMAQQALEMLEVDQHGFDLMDRKLLLAVIEHFNGGPVGIDSIAAAIGEEKGTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           +EP++IQQGF+ RTPRGR+    A+QH G     +
Sbjct: 301 LEPFLIQQGFLMRTPRGRIATSKAYQHFGFSAIEQ 335


>gi|332527519|ref|ZP_08403571.1| Holliday junction DNA helicase RuvB [Rubrivivax benzoatilyticus
           JA2]
 gi|332111926|gb|EGJ11904.1| Holliday junction DNA helicase RuvB [Rubrivivax benzoatilyticus
           JA2]
          Length = 354

 Score =  384 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 188/326 (57%), Positives = 237/326 (72%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           +     E+A    LRP+ L+E+ GQ  A   L++FI AA+ RAEALDHVL  GPPGLGKT
Sbjct: 20  APASPNEEAIERALRPKVLDEYVGQARAREQLEIFIHAARGRAEALDHVLLFGPPGLGKT 79

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           TLA +VA ELGVN R TSGPV+ K  DLAA+LTNLE  DVLFIDEIHRLS +VEEILYPA
Sbjct: 80  TLAHIVAAELGVNLRQTSGPVLEKPRDLAAILTNLEKNDVLFIDEIHRLSPVVEEILYPA 139

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +ED+Q+D+M+G+GP+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  ++L
Sbjct: 140 LEDYQIDIMIGDGPAARSIKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYNADEL 199

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             IV R A L G+ V    A E+A RSRGTPRIA RLLRRVRD+A+V     I   IAD 
Sbjct: 200 TRIVTRSAGLLGVEVDPAGALEVARRSRGTPRIANRLLRRVRDYAQVKGDGRIDAPIADK 259

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL  L +D +GFD +D + L  +   F GGPVG++ ++A + E    IED+IEPY+IQQG
Sbjct: 260 ALALLDVDPLGFDVMDRKLLEAVIHRFDGGPVGLDNVAAAIGEESGTIEDVIEPYLIQQG 319

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIPHR 334
           ++QRTPRGR+    A++HLG+  P R
Sbjct: 320 YLQRTPRGRVATLAAYRHLGLSPPQR 345


>gi|54297489|ref|YP_123858.1| Holliday junction DNA helicase RuvB [Legionella pneumophila str.
           Paris]
 gi|59800220|sp|Q5X4Y6|RUVB_LEGPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|172047900|sp|A5IC73|RUVB_LEGPC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|53751274|emb|CAH12685.1| hypothetical protein lpp1534 [Legionella pneumophila str. Paris]
          Length = 336

 Score =  384 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 184/335 (54%), Positives = 243/335 (72%), Gaps = 1/335 (0%)

Query: 1   MMDREGLLSRN-VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S   +  EDA    +RP +L E+ GQ    S +++FI AA+ R + LDHVL 
Sbjct: 1   MLESDRLISSQSIVSEDAMDRAIRPLSLSEYVGQDSVSSQMQIFINAARKRNDPLDHVLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A E+GVN R TSGPVI +AGD+AA+LTNL+  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIIAHEMGVNIRQTSGPVIERAGDIAAILTNLQQNDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           ++EEILYPAMED++LD+M+GEGP+ARS+K+ L  FTLI ATTR GLLT+PL+DRFGI  R
Sbjct: 121 VIEEILYPAMEDYKLDIMIGEGPAARSIKLELPPFTLIGATTRAGLLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y ++ L  IV R A L G+    E A EIA+RSRGTPRIA RLLRRVRD++EV    
Sbjct: 181 LEYYSVDSLTKIVARSAHLLGVPTKPEGAREIALRSRGTPRIANRLLRRVRDYSEVKGNG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT ++A  AL  L +D+ GFD +D + L  +  +F GGPVGI++I+A + E +  IED+
Sbjct: 241 IITVDMAQQALEMLEVDQHGFDLMDRKLLLAVIEHFNGGPVGIDSIAAAIGEEKGTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           +EP++IQQGF+ RTPRGR+    A+QH G     +
Sbjct: 301 LEPFLIQQGFLMRTPRGRIATSKAYQHFGFSAIEQ 335


>gi|237654484|ref|YP_002890798.1| Holliday junction DNA helicase RuvB [Thauera sp. MZ1T]
 gi|237625731|gb|ACR02421.1| Holliday junction DNA helicase RuvB [Thauera sp. MZ1T]
          Length = 351

 Score =  384 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 198/331 (59%), Positives = 247/331 (74%), Gaps = 2/331 (0%)

Query: 5   EGLLSRNVS--QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           E L+S   +  QEDA    LRP+ L E+ GQV+    L++FI+AA+ R+EALDHVL  GP
Sbjct: 14  ERLISAAPADRQEDAIERALRPKRLAEYVGQVKIREQLEIFIQAARNRSEALDHVLLFGP 73

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA +VA E+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VE
Sbjct: 74  PGLGKTTLAHIVAAEMGVNMRQTSGPVLERAGDLAALLTNLEPHDVLFIDEIHRLSPVVE 133

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILYPA+EDFQ+D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL F
Sbjct: 134 EILYPALEDFQIDIMIGEGPAARSVKLDLPPFTLVGATTRAGMLTNPLRDRFGIVSRLEF 193

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  ++L  IV R A+L  + + D  A EIA R+RGTPRIA RLLRRVRD+AEV     IT
Sbjct: 194 YTADELAFIVGRSARLLNVEIEDNGALEIARRARGTPRIANRLLRRVRDYAEVKAGGRIT 253

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             +ADAAL  L +D +G D +D + L+ +   FGGGPVG++ I+A + E  D IED+IEP
Sbjct: 254 AAVADAALRMLDVDNLGLDLMDRKLLSAMLEKFGGGPVGLDNIAAAIGESTDTIEDVIEP 313

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           Y+IQQG++QRTPRGR+     WQH G+  P 
Sbjct: 314 YLIQQGYLQRTPRGRMATQSIWQHFGLVPPR 344


>gi|197119681|ref|YP_002140108.1| Holliday junction DNA helicase RuvB [Geobacter bemidjiensis Bem]
 gi|226698777|sp|B5EAH3|RUVB_GEOBB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|197089041|gb|ACH40312.1| Holliday junction DNA helicase RuvB [Geobacter bemidjiensis Bem]
          Length = 337

 Score =  384 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 195/328 (59%), Positives = 249/328 (75%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            L+S + S++D   + LRPR L ++ GQ +A  NL +FI+AA+ R+EALDHVL  GPPGL
Sbjct: 3   RLISADKSEDDLLEASLRPRALSDYVGQEKAKGNLGLFIDAARGRSEALDHVLLYGPPGL 62

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLA ++A E+GVN +STSGPVI + GDLAA+LTNLE  DVLFIDEIHRLS +VEEIL
Sbjct: 63  GKTTLANIIACEMGVNIKSTSGPVIERPGDLAAILTNLEAHDVLFIDEIHRLSHVVEEIL 122

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           YPAMEDFQLD+++G+GPSAR++K++L +FTL+ ATTR GLL++PL+DRFG+  RL FY  
Sbjct: 123 YPAMEDFQLDIIIGQGPSARTIKLDLPKFTLVGATTRAGLLSSPLRDRFGVISRLEFYTH 182

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           E+L  I+ R A++ G+A+  E A E+A RSRGTPRIA RLLRRVRDFA+V     ITRE+
Sbjct: 183 EELAFIITRSARIFGMAIAPEGAMELARRSRGTPRIANRLLRRVRDFAQVRADGVITREV 242

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           AD AL  L ID MGFD +D   L  I   FGGGPVG++TI+A +SE  D IED+ EP++I
Sbjct: 243 ADQALALLEIDDMGFDMMDRAILLTIIDKFGGGPVGLDTIAAAISEESDTIEDVYEPFLI 302

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           Q GF+ RTPRGR+    A++H G   P 
Sbjct: 303 QNGFLNRTPRGRVATAAAYRHFGRIAPE 330


>gi|49481506|ref|YP_038470.1| Holliday junction DNA helicase RuvB [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|52141086|ref|YP_085743.1| Holliday junction DNA helicase B [Bacillus cereus E33L]
 gi|68715378|sp|Q634C4|RUVB_BACCZ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|68715488|sp|Q6HDA6|RUVB_BACHK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|49333062|gb|AAT63708.1| holliday junction DNA helicase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|51974555|gb|AAU16105.1| Holliday junction DNA helicase, subunit B [Bacillus cereus E33L]
          Length = 336

 Score =  384 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 189/334 (56%), Positives = 248/334 (74%), Gaps = 2/334 (0%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           +MD E LLS   + EDAD+   LRP+TL ++ GQ +A  NL+VFIEAAK R E LDHVL 
Sbjct: 3   IMD-ERLLSGESAYEDADLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLL 61

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT+L+  DVLFIDEIHRL  
Sbjct: 62  YGPPGLGKTTLANIIANEMGVNVRTTSGPAIERPGDLAAVLTSLQPGDVLFIDEIHRLHR 121

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            +EE+LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTR G L+ PL+DRFG+  R
Sbjct: 122 SIEEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSR 181

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y ++ L  IV+R A++  + +   AA EIA R+RGTPRIA RLLRRVRDFA+V    
Sbjct: 182 LEYYTVDQLSAIVERTAEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRGNG 241

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           T+T EI   AL  L +DK+G D +D + L  I   F GGPVG+ET+SA + E    IED+
Sbjct: 242 TVTMEITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSATIGEESHTIEDV 301

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            EPY++Q GF+QRTPRGR++ P+A++H G+++P 
Sbjct: 302 YEPYLLQIGFLQRTPRGRIVTPLAYEHFGMEMPK 335


>gi|196034306|ref|ZP_03101715.1| Holliday junction DNA helicase RuvB [Bacillus cereus W]
 gi|222097865|ref|YP_002531922.1| holliday junction DNA helicase ruvb [Bacillus cereus Q1]
 gi|228929465|ref|ZP_04092486.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228935740|ref|ZP_04098553.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|229093492|ref|ZP_04224595.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           Rock3-42]
 gi|229123961|ref|ZP_04253153.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           95/8201]
 gi|254767411|sp|B9IYZ4|RUVB_BACCQ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|195992848|gb|EDX56807.1| Holliday junction DNA helicase RuvB [Bacillus cereus W]
 gi|221241923|gb|ACM14633.1| holliday junction DNA helicase [Bacillus cereus Q1]
 gi|228659263|gb|EEL14911.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           95/8201]
 gi|228689963|gb|EEL43767.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           Rock3-42]
 gi|228823978|gb|EEM69797.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228830253|gb|EEM75869.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
          Length = 333

 Score =  384 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 189/333 (56%), Positives = 247/333 (74%), Gaps = 2/333 (0%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD E LLS   + EDAD+   LRP+TL ++ GQ +A  NL+VFIEAAK R E LDHVL  
Sbjct: 1   MD-ERLLSGESAYEDADLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLLY 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT+L+  DVLFIDEIHRL   
Sbjct: 60  GPPGLGKTTLANIIANEMGVNVRTTSGPAIERPGDLAAVLTSLQPGDVLFIDEIHRLHRS 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EE+LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTR G L+ PL+DRFG+  RL
Sbjct: 120 IEEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y ++ L  IV+R A++  + +   AA EIA R+RGTPRIA RLLRRVRDFA+V    T
Sbjct: 180 EYYTVDQLSAIVERTAEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRGNGT 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +T EI   AL  L +DK+G D +D + L  I   F GGPVG+ET+SA + E    IED+ 
Sbjct: 240 VTMEITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSATIGEESHTIEDVY 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY++Q GF+QRTPRGR++ P+A++H G+++P 
Sbjct: 300 EPYLLQIGFLQRTPRGRIVTPLAYEHFGMEMPK 332


>gi|325128351|gb|EGC51235.1| Holliday junction DNA helicase RuvB [Neisseria meningitidis N1568]
          Length = 343

 Score =  384 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 199/319 (62%), Positives = 246/319 (77%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           +QE+     LRP+TL+++ GQ +A   L +FI+AAK R EALDHVL  GPPGLGKTTLA 
Sbjct: 23  AQEELLERALRPKTLDDYIGQDKAKEQLAIFIQAAKKRGEALDHVLLFGPPGLGKTTLAH 82

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++A+ELGVN R TSGPV+ +AGDLAALLTNL+  DVLFIDEIHRLS +VEEILYPA+ED+
Sbjct: 83  IIAKELGVNLRQTSGPVLERAGDLAALLTNLDPHDVLFIDEIHRLSPVVEEILYPALEDY 142

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           +LD+M+GEGP+ARSVKINL  FTLI ATTR G+LTNPL+DRFGI  RL FYE  DL TIV
Sbjct: 143 RLDIMIGEGPAARSVKINLPPFTLIGATTRAGMLTNPLRDRFGIVSRLEFYENRDLTTIV 202

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R A+L  L +++E A EIA RSRGTPRIA RLLRRVRDFA+V +  TI   IADAAL  
Sbjct: 203 SRSAQLLQLDMSEEGAEEIAKRSRGTPRIANRLLRRVRDFADVKNNGTIDGGIADAALSM 262

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D  G D +D ++L  +   FGGGPVG++ ++A + E  D IED+IEPY+IQQGF+QR
Sbjct: 263 LDVDAQGLDVMDRKFLEAVLHKFGGGPVGLDNVAAAIGESTDTIEDVIEPYLIQQGFLQR 322

Query: 313 TPRGRLLMPIAWQHLGIDI 331
           TPRGR+    A+ H G+ +
Sbjct: 323 TPRGRMATERAYLHFGLPV 341


>gi|187927479|ref|YP_001897966.1| Holliday junction DNA helicase RuvB [Ralstonia pickettii 12J]
 gi|241662009|ref|YP_002980369.1| Holliday junction DNA helicase RuvB [Ralstonia pickettii 12D]
 gi|309779819|ref|ZP_07674574.1| holliday junction DNA helicase RuvB [Ralstonia sp. 5_7_47FAA]
 gi|238691842|sp|B2UFL1|RUVB_RALPJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|187724369|gb|ACD25534.1| Holliday junction DNA helicase RuvB [Ralstonia pickettii 12J]
 gi|240864036|gb|ACS61697.1| Holliday junction DNA helicase RuvB [Ralstonia pickettii 12D]
 gi|308921396|gb|EFP67038.1| holliday junction DNA helicase RuvB [Ralstonia sp. 5_7_47FAA]
          Length = 357

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 197/331 (59%), Positives = 244/331 (73%), Gaps = 2/331 (0%)

Query: 5   EGLLS--RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           E ++S       E+A    LRP+ L+E+ GQ +    L +F+ AAK R+EALDHVL  GP
Sbjct: 15  ERIISASPASPNEEAFERALRPKLLDEYVGQEKVRGQLDIFMTAAKNRSEALDHVLLFGP 74

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++ARE+GVN R TSGPV+ + GDLAALLTNLE  DVLFIDEIHRLS +VE
Sbjct: 75  PGLGKTTLAHIIAREMGVNLRQTSGPVLERPGDLAALLTNLEANDVLFIDEIHRLSPVVE 134

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILYPA+ED+Q+D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL F
Sbjct: 135 EILYPALEDYQIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEF 194

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y   +L  IV R + L    + DE A EIA RSRGTPRIA RLLRRVRDFAEV     IT
Sbjct: 195 YTPAELAKIVTRSSGLLNAHIVDEGALEIAKRSRGTPRIANRLLRRVRDFAEVKADGIIT 254

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           RE+ADAAL  L +D +GFD +D + L  I   F GGPVGI+ ++A + E RD IED++EP
Sbjct: 255 REVADAALAMLDVDAVGFDLMDRKLLEAILHKFNGGPVGIDNLAAAIGEERDTIEDVLEP 314

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           Y+IQQG++QRTPRGR+    A+QH G+  P 
Sbjct: 315 YLIQQGYLQRTPRGRVATASAYQHFGLGAPK 345


>gi|90418967|ref|ZP_01226878.1| Holliday junction specific DNA helicase, subunit ruvB [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90337047|gb|EAS50752.1| Holliday junction specific DNA helicase, subunit ruvB [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 357

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 236/332 (71%), Positives = 282/332 (84%), Gaps = 1/332 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           +M    L++     ED D + LRP+ L++F GQ  A +NLK+FIEAAK R EALDHVLFV
Sbjct: 9   LMSDARLITPEKHGEDID-ATLRPQRLDDFVGQAAARANLKIFIEAAKNRGEALDHVLFV 67

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++A+ELGVNFRSTSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRLS  
Sbjct: 68  GPPGLGKTTLAQIMAKELGVNFRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSPA 127

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILYPAMEDFQLDL++GEGP+ARSVKI+LS+FTL+AATTR+GLLT PL+DRFGIP+RL
Sbjct: 128 VEEILYPAMEDFQLDLIIGEGPAARSVKIDLSKFTLVAATTRLGLLTTPLRDRFGIPVRL 187

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           NFY + +L+ IV RGA+L  L + ++ A EIA R+RGTPRIAGRLLRRVRDFA+VA A T
Sbjct: 188 NFYTVAELEHIVTRGARLMRLPMAEDGAREIARRARGTPRIAGRLLRRVRDFADVAGAAT 247

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           + R++AD AL RL +D +G DQLD RYL +IA NFGGGPVGIETI+A LSEPRDAIED++
Sbjct: 248 VDRKVADEALSRLEVDSLGLDQLDRRYLELIAMNFGGGPVGIETIAAALSEPRDAIEDIV 307

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EPY++QQGF+QRTPRGRLL   A+ HLG+ +P
Sbjct: 308 EPYLLQQGFLQRTPRGRLLTQRAFAHLGLAVP 339


>gi|121602504|ref|YP_988487.1| Holliday junction DNA helicase B [Bartonella bacilliformis KC583]
 gi|166231465|sp|A1UR84|RUVB_BARBK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|120614681|gb|ABM45282.1| Holliday junction DNA helicase RuvB [Bartonella bacilliformis
           KC583]
          Length = 369

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 232/332 (69%), Positives = 275/332 (82%), Gaps = 1/332 (0%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           +   LL   VS  D     LRP+ L++F GQ  A +NLK+FIEAAK R EALDHVLFVGP
Sbjct: 5   ENNRLLGS-VSLPDDPDRSLRPQVLDDFIGQEAARANLKIFIEAAKTRHEALDHVLFVGP 63

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTL+Q++A+ELGVNFRSTSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRL+  +E
Sbjct: 64  PGLGKTTLSQIMAKELGVNFRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLNPAIE 123

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILYPAMED+QLDL++GEGP+ARSVKI+L++FTL+AATTR+GLLT PL+DRFGIPIRLNF
Sbjct: 124 EILYPAMEDYQLDLIIGEGPAARSVKIDLAKFTLVAATTRLGLLTTPLRDRFGIPIRLNF 183

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y IE+L+ IV+R A+L  + ++D+ A EIA R+RGTPRIAGRLLRRV DFA V  AKTI 
Sbjct: 184 YTIEELEYIVKRNARLFSVPISDDGAHEIARRARGTPRIAGRLLRRVCDFALVKQAKTID 243

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           REIAD AL RL +D +G D LD  YL +IA  F GGPVGIETI+A LSEPRDAIED+IEP
Sbjct: 244 REIADTALSRLEVDHLGLDPLDRNYLMLIADVFLGGPVGIETIAAALSEPRDAIEDIIEP 303

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           Y++QQGFIQRTPRGR++   AW HLG+  P +
Sbjct: 304 YLLQQGFIQRTPRGRIITEKAWAHLGLRAPTQ 335


>gi|294669179|ref|ZP_06734259.1| holliday junction DNA helicase RuvB [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291308811|gb|EFE50054.1| holliday junction DNA helicase RuvB [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 343

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 197/329 (59%), Positives = 247/329 (75%), Gaps = 2/329 (0%)

Query: 5   EGLLSRNV--SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           E ++S     SQE+     LRP+ L ++ GQ +A   L++FI+AAK R EALDH L  GP
Sbjct: 13  ERIISAQSLSSQEEQLERALRPKLLADYIGQHKAKEQLEIFIQAAKKRGEALDHTLLFGP 72

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++A+ELGVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VE
Sbjct: 73  PGLGKTTLANIIAKELGVNLRQTSGPVLERAGDLAALLTNLEPHDVLFIDEIHRLSPVVE 132

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILYPA+ED+QLD+M+GEGP+ARSVKI+L  FTL+ ATTR G+LTNPL+DRFGI  RL F
Sbjct: 133 EILYPALEDYQLDIMIGEGPAARSVKIDLPPFTLVGATTRAGMLTNPLRDRFGIVARLEF 192

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y   DL TIV+R A L  L + +  A E+A RSRGTPRIA RLLRRVRD+AEV    +I+
Sbjct: 193 YNHADLATIVRRSAHLLQLDMDESGAMEVAKRSRGTPRIANRLLRRVRDYAEVKGDGSIS 252

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            + ADAAL  L +D +G D +D ++L  +   FGGGPVG+E I+A + E  D IED+IEP
Sbjct: 253 AKTADAALSMLDVDAVGLDVMDRKFLEAVLHKFGGGPVGLENIAAAIGESPDTIEDVIEP 312

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           Y+IQQGF+QRTPRGR+   I++ H G+ +
Sbjct: 313 YLIQQGFLQRTPRGRMATEISYLHFGLPV 341


>gi|270262222|ref|ZP_06190494.1| holliday junction ATP-dependent DNA helicase RuvB [Serratia
           odorifera 4Rx13]
 gi|270044098|gb|EFA17190.1| holliday junction ATP-dependent DNA helicase RuvB [Serratia
           odorifera 4Rx13]
          Length = 334

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 188/331 (56%), Positives = 247/331 (74%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSRN-VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S   +++E+     +RP+ L E+ GQ      +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRLISAEPINEEEILDRAIRPKLLTEYVGQPHVREQMEIFIQAAKQRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IV R A   GL +++E A ++A R+RGTPRIA RLLRRVRDFAEV    
Sbjct: 181 LEFYQVADLQHIVSRSANCLGLDLSEEGAHQVARRARGTPRIANRLLRRVRDFAEVRANG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  E+A  AL  L +D  GFD +D + L  I   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 VINGEVAMQALDMLNVDAEGFDYMDRKLLLAIIDKFAGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           IEP++IQQGFIQRTPRGR+    A++H GI 
Sbjct: 301 IEPFLIQQGFIQRTPRGRMATNHAYKHFGIA 331


>gi|317491788|ref|ZP_07950223.1| Holliday junction DNA helicase RuvB [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316920222|gb|EFV41546.1| Holliday junction DNA helicase RuvB [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 335

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 189/331 (57%), Positives = 251/331 (75%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L++  V S+E+     +RP++L E+ GQ +    +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRLITAEVQSEEEIIDRAIRPKSLSEYVGQPQVRGQMEIFIKAAKLRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPAMED+QLD+M+GEGP+ARS+KI+L  FTL+ ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLVGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IV R A+  GL++T+E A E+A RSRGTPRIA RLLRRVRD+AEV    
Sbjct: 181 LEFYQVADLQHIVGRSAQCLGLSLTEEGAHEVARRSRGTPRIANRLLRRVRDYAEVCADG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  ++A  AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 NIDADVATQALNMLDVDAEGFDYMDRKLLLAVIDKFMGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           +EPY+IQQGF+QRTPRGR+    A++H G+ 
Sbjct: 301 LEPYLIQQGFLQRTPRGRMATNHAYKHFGMT 331


>gi|227111607|ref|ZP_03825263.1| Holliday junction DNA helicase RuvB [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 336

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 190/331 (57%), Positives = 251/331 (75%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSRN-VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S + V +E+     +RP+ L E+ GQ +    +++FI+AA+ R +ALDH+L 
Sbjct: 1   MIEADRLISADAVPEEEFIDRAIRPKLLNEYVGQPQVREQMEIFIQAARKRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAALLTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNMRTTSGPVLEKAGDLAALLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++EDL+ IV R A+  GL +T E A E+A R+RGTPRIA RLLRRVRDF+EV    
Sbjct: 181 LEFYKVEDLQYIVSRSAQCLGLDLTSEGALEVARRARGTPRIANRLLRRVRDFSEVKSEG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT ++A  AL  LA+D  GFD +D + L  I   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 AITGDVATQALDMLAVDSEGFDYMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           +EP++IQQGFIQRTPRGR+    A++H G+ 
Sbjct: 301 LEPFLIQQGFIQRTPRGRMATQHAYRHFGLT 331


>gi|241668499|ref|ZP_04756077.1| Holliday junction DNA helicase RuvB [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254877033|ref|ZP_05249743.1| holliday junction DNA helicase ruvB [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254843054|gb|EET21468.1| holliday junction DNA helicase ruvB [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
          Length = 348

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 193/336 (57%), Positives = 253/336 (75%), Gaps = 3/336 (0%)

Query: 1   MMDREGLLSRNVSQ---EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M++ + ++S N  Q   E++    +RP+TL E+ GQ      +++FI+AAK+R +ALDH 
Sbjct: 1   MIETDRIISANTVQTKDENSIDRAIRPKTLAEYEGQPAVREQMEIFIQAAKSRKDALDHT 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTL+ ++A E+ V  + TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRL
Sbjct: 61  LIFGPPGLGKTTLSNIIANEMEVELKQTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           S ++EEILYPAMED+QLD+M+GEGP+ARS+KI+L  FTL+ ATTR GLLT+PL+DRFGI 
Sbjct: 121 SPVIEEILYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLVGATTRAGLLTSPLRDRFGII 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            RL FY ++DL  IV R AKL  L +TD+ A EIA RSRGTPRIA RLLRRVRD+A+V  
Sbjct: 181 QRLEFYSVDDLAKIVYRSAKLLDLDITDDGANEIAKRSRGTPRIANRLLRRVRDYAQVKA 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
           +  I+ +IAD AL  L +D +GFD +D +YL  +   FGGGPVG++T++A LSE +  IE
Sbjct: 241 SGVISYDIADKALTMLKVDPVGFDHMDHKYLLTLMEKFGGGPVGLDTMAAALSEEKGTIE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           D+IEPY+IQQG+I RT RGR+   +A+ H  + IP 
Sbjct: 301 DVIEPYLIQQGYIMRTARGRIATLLAYNHFKLKIPD 336


>gi|319638400|ref|ZP_07993162.1| Holliday junction ATP-dependent DNA helicase ruvB [Neisseria mucosa
           C102]
 gi|317400149|gb|EFV80808.1| Holliday junction ATP-dependent DNA helicase ruvB [Neisseria mucosa
           C102]
          Length = 351

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 196/329 (59%), Positives = 248/329 (75%), Gaps = 2/329 (0%)

Query: 5   EGLLSRN--VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           + +++     +QE+     LRP+TL+++ GQ +A   L +FI+AAK R EALDH L  GP
Sbjct: 21  QRIITAQNISAQEELLERALRPKTLDDYIGQDKAKEQLAIFIQAAKKRGEALDHTLLFGP 80

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++A+ELGVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VE
Sbjct: 81  PGLGKTTLAHIIAKELGVNLRQTSGPVLERAGDLAALLTNLEPHDVLFIDEIHRLSPVVE 140

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILYPA+ED+QLD+M+GEGP+ARSVKI+L  FTL+ ATTR G+LTNPL+DRFGI  RL F
Sbjct: 141 EILYPALEDYQLDIMIGEGPAARSVKIDLPPFTLVGATTRAGMLTNPLRDRFGIVSRLEF 200

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y+ +DL TIV R A+L  L + +E A E+A RSRGTPRIA RLLRRVRD+A+V +   I 
Sbjct: 201 YQNKDLATIVARSAQLLQLDMGEEGAMEVAKRSRGTPRIANRLLRRVRDYADVKNNGVID 260

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            EIADAAL  L +D  G D +D ++L  I   F GGPVG+E ++A + E  D IED+IEP
Sbjct: 261 AEIADAALSMLDVDGQGLDVMDRKFLEAILHKFSGGPVGLENVAAAIGESTDTIEDVIEP 320

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           Y+IQQGF+QRTPRGR+    A+ H G+ +
Sbjct: 321 YLIQQGFLQRTPRGRVATERAYLHFGLKV 349


>gi|229032071|ref|ZP_04188053.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           AH1271]
 gi|228729263|gb|EEL80258.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           AH1271]
          Length = 333

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 188/333 (56%), Positives = 246/333 (73%), Gaps = 2/333 (0%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD E LLS   + ED+D+   LRP+TL ++ GQ +A  NL+VFIEAAK R E LDHVL  
Sbjct: 1   MD-ERLLSGESAYEDSDLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLLY 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT L+  DVLFIDEIHRL   
Sbjct: 60  GPPGLGKTTLANIIANEMGVNVRTTSGPAIERPGDLAAVLTALQPGDVLFIDEIHRLHRS 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EE+LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTR G L+ PL+DRFG+  RL
Sbjct: 120 IEEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y ++ L  IV+R A++  + +   AA EIA R+RGTPRIA RLLRRVRDFA+V    T
Sbjct: 180 EYYTVDQLSEIVERTAEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRGNGT 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +T EI   AL  L +DK+G D +D + L  I   F GGPVG+ET+SA + E    IED+ 
Sbjct: 240 VTMEITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSATIGEESHTIEDVY 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY++Q GF+QRTPRGR++ P+A++H G+++P 
Sbjct: 300 EPYLLQIGFLQRTPRGRIVTPLAYEHFGMEMPK 332


>gi|167745588|ref|ZP_02417715.1| hypothetical protein ANACAC_00279 [Anaerostipes caccae DSM 14662]
 gi|317472816|ref|ZP_07932127.1| Holliday junction DNA helicase RuvB [Anaerostipes sp. 3_2_56FAA]
 gi|167654900|gb|EDR99029.1| hypothetical protein ANACAC_00279 [Anaerostipes caccae DSM 14662]
 gi|316899735|gb|EFV21738.1| Holliday junction DNA helicase RuvB [Anaerostipes sp. 3_2_56FAA]
          Length = 332

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 180/330 (54%), Positives = 243/330 (73%), Gaps = 1/330 (0%)

Query: 5   EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           + ++S  + +ED  I   LRP+ L+++ GQ +   NL++FIEAAK+R E+LDHVL  GPP
Sbjct: 3   DRMISTELVEEDITIENNLRPQNLDDYIGQEKVKQNLRIFIEAAKSRGESLDHVLLYGPP 62

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA +VA E+ V+ + TSGP I K G++AALL NL++ DVLFIDEIHRL+  VEE
Sbjct: 63  GLGKTTLAGIVANEMEVHLKVTSGPAIEKPGEIAALLNNLQEGDVLFIDEIHRLNRQVEE 122

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LYPAMEDF +D++VG+G +ARS+++ L +FTL+ ATTR G+LT PL+DRFG+  RLNFY
Sbjct: 123 VLYPAMEDFAIDILVGKGQAARSIRLELPKFTLVGATTRAGMLTAPLRDRFGVVNRLNFY 182

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           E E+L TIV   A + G+ + +E A EIA RSRGTPR+A RLL+RVRDFAEV +   IT+
Sbjct: 183 ETEELMTIVINSAAVLGIPIEEEGAREIARRSRGTPRLANRLLKRVRDFAEVKYDGVITK 242

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           E+A +AL  L +D +G DQ+D   L  +   F G PVG++T++A + E    IED+ EPY
Sbjct: 243 EVAMSALNHLEVDTLGLDQIDRTLLKTMIEVFHGSPVGLDTLAAAVGEDSGTIEDVYEPY 302

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +IQ G IQRTPRGR++   A+QH G+ IP 
Sbjct: 303 LIQNGLIQRTPRGRIVTGAAYQHFGLPIPE 332


>gi|269797655|ref|YP_003311555.1| Holliday junction DNA helicase RuvB [Veillonella parvula DSM 2008]
 gi|269094284|gb|ACZ24275.1| Holliday junction DNA helicase RuvB [Veillonella parvula DSM 2008]
          Length = 334

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 192/330 (58%), Positives = 243/330 (73%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M +   L+     +ED     LRP+   E+ GQ EA  NL V+I+AAK R EALDHVL  
Sbjct: 1   MNEEVRLVGNGEHEEDIWQYSLRPKFFNEYVGQEEAKGNLNVYIQAAKQRGEALDHVLLY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A ELGVNFR TSGP I K+GDLAA+LTNL+D DVLFIDEIHRLS  
Sbjct: 61  GPPGLGKTTLAGIIANELGVNFRITSGPAIEKSGDLAAILTNLDDHDVLFIDEIHRLSRS 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LY AMED+ +D+++G+GPSAR+V+I+L +FTL+ ATTR G L  PL+DRFGI  RL
Sbjct: 121 VEEVLYSAMEDYAIDIIIGKGPSARTVRIDLPKFTLVGATTRAGALAAPLRDRFGIINRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y+  +L+ IV R A++  + +    A EIA RSRGTPRIA RLL+RVRDFA+V     
Sbjct: 181 EYYKQPELEFIVSRAAEILNIGIVPTGASEIARRSRGTPRIANRLLKRVRDFAQVIGDGV 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           IT+EIAD AL RL +DKMG D++D R L  I   + GGPVGI+TI+A +SE RD IED+ 
Sbjct: 241 ITQEIADEALQRLYVDKMGLDRIDRRVLECIIEKYDGGPVGIDTIAAAISEERDTIEDVY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           EPY++Q GF+ RTPRGR+   +A++HLGI 
Sbjct: 301 EPYLMQLGFLGRTPRGRVATKLAYEHLGIS 330


>gi|322420883|ref|YP_004200106.1| Holliday junction DNA helicase RuvB [Geobacter sp. M18]
 gi|320127270|gb|ADW14830.1| Holliday junction DNA helicase RuvB [Geobacter sp. M18]
          Length = 337

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 191/328 (58%), Positives = 245/328 (74%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
             +S   S+ED   + LRPR L ++ GQ +A  NL +FI+AA+ R EALDHVL  GPPGL
Sbjct: 3   RFISAERSEEDLLEASLRPRALADYVGQEKAKGNLGLFIDAARGRGEALDHVLLYGPPGL 62

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLA ++A E+GV+ +STSGPVI + GDLAA+LTNLE  DVLFIDEIHRLS +VEEIL
Sbjct: 63  GKTTLANIIACEMGVSIKSTSGPVIERPGDLAAILTNLEPHDVLFIDEIHRLSHVVEEIL 122

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           YPAMEDFQLD+++G+GPSAR++K++L +FTL+ ATTR GLL++PL+DRFG+  RL FY  
Sbjct: 123 YPAMEDFQLDIIIGQGPSARTIKLDLPKFTLVGATTRAGLLSSPLRDRFGVISRLEFYTH 182

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           E+L  I+ R +++ G+A+  + A E+A RSRGTPRIA RLLRRVRDFA+V     ITR++
Sbjct: 183 EELAFIITRSSRIFGMAIAPDGALELARRSRGTPRIANRLLRRVRDFAQVRADGVITRDV 242

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           AD AL  L ID MGFD +D   L  I   FGGGPVG++TI+A +SE  D IED+ EP++I
Sbjct: 243 ADQALALLEIDDMGFDTMDRAILLTIIDKFGGGPVGLDTIAAAISEESDTIEDVYEPFLI 302

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           Q GF+ RTPRGR+    A+ H G   P 
Sbjct: 303 QNGFLNRTPRGRVATAAAYSHFGRIAPE 330


>gi|89899630|ref|YP_522101.1| Holliday junction DNA helicase RuvB [Rhodoferax ferrireducens T118]
 gi|123397365|sp|Q220I3|RUVB_RHOFD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|89344367|gb|ABD68570.1| Holliday junction DNA helicase RuvB [Rhodoferax ferrireducens T118]
          Length = 358

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 187/324 (57%), Positives = 240/324 (74%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           +     E+A    LRP+ L+E+ GQ +    L++FI AA+ R EALDHVL  GPPGLGKT
Sbjct: 20  APASPNEEAVERALRPKLLDEYVGQAKVREQLEIFISAARMRDEALDHVLLFGPPGLGKT 79

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           TL+ ++A ELGVN R TSGPV+ K  DLAALLTNLE  DVLFIDEIHRLS +VEEILYPA
Sbjct: 80  TLSHIIAHELGVNLRQTSGPVLEKPKDLAALLTNLEKNDVLFIDEIHRLSPVVEEILYPA 139

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +ED+++D+M+GEGP+ARS+K++L  FTLI ATTR G+LTNPL+DRFGI  RL FY  E+L
Sbjct: 140 LEDYKIDIMIGEGPAARSIKLDLQPFTLIGATTRAGMLTNPLRDRFGIVARLEFYSPEEL 199

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
            +IV+R A L  +   ++   EIA RSRGTPRIA RLLRRVRD+A+V  A  IT +IA  
Sbjct: 200 ASIVRRSAGLLKVPTDEKGGFEIARRSRGTPRIANRLLRRVRDYADVKGAGEITLDIAHR 259

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL+ L +D  GFD +D + L  +   F GGPVG++ I+A + E R+ IED+IEPY+IQQG
Sbjct: 260 ALVMLDVDPQGFDLMDRKLLEAVIHRFDGGPVGLDNIAASIGEERETIEDVIEPYLIQQG 319

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIP 332
           ++QRTPRGR+    A++HLG+  P
Sbjct: 320 YLQRTPRGRIATLAAYKHLGVTPP 343


>gi|253699566|ref|YP_003020755.1| Holliday junction DNA helicase RuvB [Geobacter sp. M21]
 gi|259495668|sp|C6E1S8|RUVB_GEOSM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|251774416|gb|ACT16997.1| Holliday junction DNA helicase RuvB [Geobacter sp. M21]
          Length = 337

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 193/328 (58%), Positives = 247/328 (75%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            L+S + S++D   + LRPR L ++ GQ +A  NL +FI+AA+ R EALDHVL  GPPGL
Sbjct: 3   RLISADKSEDDLLEASLRPRALSDYVGQEKAKGNLGLFIDAARGRGEALDHVLLYGPPGL 62

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLA ++A E+GVN +STSGPVI + GDLAA+LTNLE  DVLFIDEIHRLS +VEEIL
Sbjct: 63  GKTTLANIIACEMGVNIKSTSGPVIERPGDLAAILTNLEAHDVLFIDEIHRLSHVVEEIL 122

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           YPAMEDFQLD+++G+GPSAR++K++L +FTL+ ATTR GLL++PL+DRFG+  RL FY  
Sbjct: 123 YPAMEDFQLDIIIGQGPSARTIKLDLPKFTLVGATTRAGLLSSPLRDRFGVISRLEFYTH 182

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           ++L  I+ R A++ G+A+  E A E+A RSRGTPRIA RLLRRVRDFA+V     ITR +
Sbjct: 183 DELAFIITRSARIFGMAIAPEGAMELARRSRGTPRIANRLLRRVRDFAQVRADGVITRAV 242

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           AD AL  L ID+MGFD +D   L  I   FGGGPVG++TI+A +SE  D IED+ EP++I
Sbjct: 243 ADQALALLEIDEMGFDMMDRAILLTIIDKFGGGPVGLDTIAAAISEESDTIEDVYEPFLI 302

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           Q GF+ RTPRGR+    A+ H G   P 
Sbjct: 303 QNGFLNRTPRGRVATAAAYSHFGRIAPE 330


>gi|228941588|ref|ZP_04104136.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228974517|ref|ZP_04135084.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228981111|ref|ZP_04141412.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus
           thuringiensis Bt407]
 gi|228778652|gb|EEM26918.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus
           thuringiensis Bt407]
 gi|228785234|gb|EEM33246.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228818095|gb|EEM64172.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|326942201|gb|AEA18097.1| Holliday junction DNA helicase B [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 333

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 189/333 (56%), Positives = 246/333 (73%), Gaps = 2/333 (0%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD E LLS   + EDAD+   LRP+TL ++ GQ +A  NL+VFIEAAK R E LDHVL  
Sbjct: 1   MD-ERLLSGESAYEDADLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLLY 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT L+  DVLFIDEIHRL   
Sbjct: 60  GPPGLGKTTLANIIANEMGVNVRTTSGPAIERPGDLAAVLTALQPGDVLFIDEIHRLHRS 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EE+LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTR G L+ PL+DRFG+  RL
Sbjct: 120 IEEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y ++ L  IV+R A++  + +   AA EIA R+RGTPRIA RLLRRVRDFA+V    T
Sbjct: 180 EYYTVDQLSAIVERTAEVFEVEINSLAALEIARRARGTPRIANRLLRRVRDFAQVRGNGT 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +T EI   AL  L +DK+G D +D + L  I   F GGPVG+ET+SA + E    IED+ 
Sbjct: 240 VTMEITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSATIGEESHTIEDVY 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY++Q GF+QRTPRGR++ P+A++H G+++P 
Sbjct: 300 EPYLLQIGFLQRTPRGRIVTPLAYEHFGMEMPK 332


>gi|239817618|ref|YP_002946528.1| Holliday junction DNA helicase RuvB [Variovorax paradoxus S110]
 gi|259495682|sp|C5CM03|RUVB_VARPS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|239804195|gb|ACS21262.1| Holliday junction DNA helicase RuvB [Variovorax paradoxus S110]
          Length = 354

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 188/324 (58%), Positives = 237/324 (73%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           +    QE+A    LRP+ L+E+ GQ +    L++FI AA+ R EALDHVL  GPPGLGKT
Sbjct: 19  APASPQEEAIERALRPKLLDEYVGQAKVREQLEIFIGAARKRKEALDHVLLFGPPGLGKT 78

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           TL+ ++A ELGVN R TSGPV+ K  DLAALLTNLE  DVLFIDEIHRLS +VEEILYPA
Sbjct: 79  TLSHIIAAELGVNLRQTSGPVLEKPKDLAALLTNLEPNDVLFIDEIHRLSPVVEEILYPA 138

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +ED+Q+D+M+GEGP+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  E+L
Sbjct: 139 LEDYQIDIMIGEGPAARSIKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTPEEL 198

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             IV+R A L  +        EIA RSRGTPRIA RLLRRVRD+AEV     IT +IA  
Sbjct: 199 ALIVRRSAGLLKVDTDAAGGFEIARRSRGTPRIANRLLRRVRDYAEVKGNGRITEDIAHK 258

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL+ L +D  GFD +D + L  +   F GGPVG++ ++A + E RD IED+IEPY+IQQG
Sbjct: 259 ALVMLDVDPQGFDLMDRKLLEAVIHRFDGGPVGLDNVAASIGEERDTIEDVIEPYLIQQG 318

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIP 332
           ++QRTPRGR+    A++HLG+  P
Sbjct: 319 YLQRTPRGRIATLAAYRHLGVTPP 342


>gi|317051308|ref|YP_004112424.1| Holliday junction DNA helicase RuvB [Desulfurispirillum indicum S5]
 gi|316946392|gb|ADU65868.1| Holliday junction DNA helicase RuvB [Desulfurispirillum indicum S5]
          Length = 341

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 185/332 (55%), Positives = 243/332 (73%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M  E L+S  + +ED     LRP  L ++ GQ     NL VF++AAK R E +DH+LF G
Sbjct: 1   MSEERLISGQIHEEDQQELRLRPENLSQYIGQQRLKDNLSVFLQAAKGRGEPVDHILFSG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTT+A ++A E+GVN RSTSGPVI K+ DLAA+LTNL+  DVLFIDEIHRL+  V
Sbjct: 61  PPGLGKTTIAHIIANEMGVNIRSTSGPVIEKSADLAAILTNLQSGDVLFIDEIHRLNTSV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILYPAMEDFQLD+++G+GP+ARS+KI+L  FTLI ATTR GLL++PL+DRFG+  RL 
Sbjct: 121 EEILYPAMEDFQLDIIIGQGPAARSIKIDLPPFTLIGATTRAGLLSSPLRDRFGVHSRLE 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FYE++DL  I+ R A + G+A+  + A E+A RSRGTPRIA RLLRRVRDFA++    +I
Sbjct: 181 FYEVDDLLAIITRSASILGIAIEGDGARELARRSRGTPRIANRLLRRVRDFAQIKGHGSI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
              IA  AL +L +D+ G D LD + L  I   F GGPVG++T++A  +E R  +ED+ E
Sbjct: 241 DHAIARYALEQLEVDEAGLDYLDRKVLLAIIEKFSGGPVGLDTLAACTAEERGTLEDVCE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           PY+IQQG +QRTPRGR++    ++H G++ P 
Sbjct: 301 PYLIQQGLLQRTPRGRIITENGYRHFGLNSPR 332


>gi|229175094|ref|ZP_04302611.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           MM3]
 gi|228608390|gb|EEK65695.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           MM3]
          Length = 333

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 189/333 (56%), Positives = 246/333 (73%), Gaps = 2/333 (0%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD E LLS   + ED+D+   LRP+TL ++ GQ +A  NL+VFIEAAK R E LDHVL  
Sbjct: 1   MD-ERLLSGESAYEDSDLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLLY 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT L+  DVLFIDEIHRL   
Sbjct: 60  GPPGLGKTTLANIIANEMGVNVRTTSGPAIERPGDLAAVLTALQPGDVLFIDEIHRLHRS 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EE+LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTR G L+ PL+DRFG+  RL
Sbjct: 120 IEEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y ++ L  IV+R A++  + +   AA EIA R+RGTPRIA RLLRRVRDFA+V    T
Sbjct: 180 EYYTVDQLSEIVERTAEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRGNGT 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +T EI   AL  L +DK+G D +D + L  I   F GGPVG+ET+SA + E    IED+ 
Sbjct: 240 VTMEITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSATIGEESHTIEDVY 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY++Q GF+QRTPRGR++ P+A++H G++IP 
Sbjct: 300 EPYLLQIGFLQRTPRGRIVTPLAYEHFGMEIPK 332


>gi|229163368|ref|ZP_04291320.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           R309803]
 gi|228620149|gb|EEK77023.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           R309803]
          Length = 333

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 188/333 (56%), Positives = 245/333 (73%), Gaps = 2/333 (0%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD E LLS   + ED D+   LRP+TL ++ GQ +A  NL+VFIEAAK R E LDHVL  
Sbjct: 1   MD-ERLLSGESAYEDVDLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLLY 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT L+  DVLFIDEIHRL   
Sbjct: 60  GPPGLGKTTLANIIANEMGVNVRTTSGPAIERPGDLAAVLTALQPGDVLFIDEIHRLHRS 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EE+LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTR G L+ PL+DRFG+  RL
Sbjct: 120 IEEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y ++ L  IV+R A++  + +   AA EIA R+RGTPRIA RLLRRVRDFA+V    T
Sbjct: 180 EYYTVDQLSEIVERTAEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRGNGT 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +T EI   AL  L +DK+G D +D + L  I   F GGPVG+ET+SA + E    IED+ 
Sbjct: 240 VTMEITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSATIGEESHTIEDVY 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY++Q GF+QRTPRGR++ P+A++H G+++P 
Sbjct: 300 EPYLLQIGFLQRTPRGRIVTPLAYEHFGMEMPK 332


>gi|163751785|ref|ZP_02159002.1| Holliday junction DNA helicase RuvB [Shewanella benthica KT99]
 gi|161328349|gb|EDP99509.1| Holliday junction DNA helicase RuvB [Shewanella benthica KT99]
          Length = 339

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 195/338 (57%), Positives = 250/338 (73%), Gaps = 4/338 (1%)

Query: 1   MMDREGLLSRNVSQ----EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH 56
           M++ + ++          E+     +RP+ L+E+TGQ    + LKVFI+AAK R EALDH
Sbjct: 1   MIEADRIIHAEPQGVELYEEQVDRAMRPKLLDEYTGQDATRAQLKVFIQAAKNRGEALDH 60

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHR 116
           +L  GPPGLGKTTLA +VA E+GVN +STSGPV+ KAGDLAALLTNLE  DVLFIDEIHR
Sbjct: 61  MLIYGPPGLGKTTLALIVANEMGVNIKSTSGPVLEKAGDLAALLTNLESGDVLFIDEIHR 120

Query: 117 LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
           LS +VEEILYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+ RFGI
Sbjct: 121 LSPVVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGALTSPLRSRFGI 180

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
           P+RL FY ++DL TIV R AK+  L + +E + EIA RSRGTPRIA RLLRRVRD+AEV 
Sbjct: 181 PLRLEFYNVKDLSTIVTRSAKVLELPIDEEGSLEIARRSRGTPRIANRLLRRVRDYAEVK 240

Query: 237 HAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAI 296
           H   I + +AD AL  L +D  GFD +D + +  I   F GGPVG++ ++A + E R+ I
Sbjct: 241 HDGEINKHVADLALEMLDVDVEGFDYMDRKLMLAIIDKFMGGPVGLDNLAAAIGEERETI 300

Query: 297 EDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           ED++EP++IQQGFIQRTPRGR+    A+QH  +  P +
Sbjct: 301 EDVLEPFLIQQGFIQRTPRGRIATQRAYQHFNLIQPEQ 338


>gi|157371016|ref|YP_001479005.1| Holliday junction DNA helicase RuvB [Serratia proteamaculans 568]
 gi|167012672|sp|A8GFI7|RUVB_SERP5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|157322780|gb|ABV41877.1| Holliday junction DNA helicase RuvB [Serratia proteamaculans 568]
          Length = 334

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 187/330 (56%), Positives = 247/330 (74%), Gaps = 1/330 (0%)

Query: 1   MMDREGLLSRN-VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S   +++E+     +RP+ L E+ GQ      +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRLISAEPINEEEILDRAIRPKLLTEYVGQPHVREQMEIFIQAAKQRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IV R A   GL +++E A ++A R+RGTPRIA RLLRRVRDFAEV    
Sbjct: 181 LEFYQVADLQHIVSRSANCLGLDLSEEGAHQVARRARGTPRIANRLLRRVRDFAEVRANG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  E+A  AL  L +D  GFD +D + L  I   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 VINGEVAMQALDMLNVDAEGFDYMDRKLLLAIIDKFTGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           IEP++IQQGFIQRTPRGR+    A++H G+
Sbjct: 301 IEPFLIQQGFIQRTPRGRMATNHAYKHFGM 330


>gi|299533021|ref|ZP_07046408.1| Holliday junction DNA helicase RuvB [Comamonas testosteroni S44]
 gi|298719245|gb|EFI60215.1| Holliday junction DNA helicase RuvB [Comamonas testosteroni S44]
          Length = 364

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 194/329 (58%), Positives = 242/329 (73%), Gaps = 2/329 (0%)

Query: 6   GLLSRNVSQ--EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
            ++S   S   E+A    LRP+ L+E+ GQ +A   L++FI AAK R+EALDHVL  GPP
Sbjct: 31  RMVSAGHSSQGEEALERALRPKQLDEYVGQAKAREQLEIFIGAAKKRSEALDHVLLFGPP 90

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTL+ ++A ELGVN R TSGPV+ K  DLAALLTNLE  DVLFIDEIHRLS +VEE
Sbjct: 91  GLGKTTLSHIIAAELGVNLRQTSGPVLEKPKDLAALLTNLEPNDVLFIDEIHRLSPVVEE 150

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILYPA+ED+Q+D+M+GEGP+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY
Sbjct: 151 ILYPALEDYQIDIMIGEGPAARSIKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFY 210

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
             E+L  IV+R A L    +  E   EIA RSRGTPRIA RLLRRVRD+A+V     ITR
Sbjct: 211 TSEELSRIVRRSAGLLNAPIDAEGCFEIARRSRGTPRIANRLLRRVRDYADVKGDGRITR 270

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           EIAD AL  L +D  GFD +D + L  +   F GGPVG++ I+A + E    IED+IEPY
Sbjct: 271 EIADRALAMLDVDPQGFDIMDRKLLEAVVHRFDGGPVGLDNIAASIGEESGTIEDVIEPY 330

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           +IQQGF+QRTPRGR+    A++HLG+ +P
Sbjct: 331 LIQQGFLQRTPRGRMATQAAYRHLGLPVP 359


>gi|229048129|ref|ZP_04193700.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           AH676]
 gi|228723232|gb|EEL74606.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           AH676]
          Length = 333

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 190/333 (57%), Positives = 246/333 (73%), Gaps = 2/333 (0%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD E LLS   + EDAD+   LRP+TL ++ GQ +A  NL+VFIEAAK R E LDHVL  
Sbjct: 1   MD-ERLLSGEPAYEDADLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLLY 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT L+  DVLFIDEIHRL   
Sbjct: 60  GPPGLGKTTLANIIANEMGVNVRTTSGPAIERPGDLAAVLTALQPGDVLFIDEIHRLHRS 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EE+LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTR G L+ PL+DRFG+  RL
Sbjct: 120 IEEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y ++ L  IV+R A++  + +   AA EIA R+RGTPRIA RLLRRVRDFA+V    T
Sbjct: 180 EYYTVDQLSAIVERTAEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRGNGT 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +T EI   AL  L +DK+G D +D + L  I   F GGPVG+ET+SA + E    IED+ 
Sbjct: 240 VTMEITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSATIGEESHTIEDVY 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY++Q GF+QRTPRGR++ P+A++H G++IP 
Sbjct: 300 EPYLLQIGFLQRTPRGRIVTPLAYEHFGMEIPK 332


>gi|206969947|ref|ZP_03230901.1| Holliday junction DNA helicase RuvB [Bacillus cereus AH1134]
 gi|218234560|ref|YP_002369229.1| Holliday junction DNA helicase RuvB [Bacillus cereus B4264]
 gi|228923172|ref|ZP_04086463.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228960693|ref|ZP_04122337.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|229071928|ref|ZP_04205139.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           F65185]
 gi|229081684|ref|ZP_04214179.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           Rock4-2]
 gi|229111892|ref|ZP_04241438.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           Rock1-15]
 gi|229146991|ref|ZP_04275353.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           BDRD-ST24]
 gi|229152623|ref|ZP_04280812.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           m1550]
 gi|229180696|ref|ZP_04308036.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           172560W]
 gi|229192631|ref|ZP_04319592.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           ATCC 10876]
 gi|296504910|ref|YP_003666610.1| Holliday junction DNA helicase B [Bacillus thuringiensis BMB171]
 gi|226725452|sp|B7HE54|RUVB_BACC4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|206735635|gb|EDZ52803.1| Holliday junction DNA helicase RuvB [Bacillus cereus AH1134]
 gi|218162517|gb|ACK62509.1| Holliday junction DNA helicase RuvB [Bacillus cereus B4264]
 gi|228590938|gb|EEK48796.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           ATCC 10876]
 gi|228602841|gb|EEK60322.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           172560W]
 gi|228630884|gb|EEK87524.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           m1550]
 gi|228636488|gb|EEK92956.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           BDRD-ST24]
 gi|228671648|gb|EEL26946.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           Rock1-15]
 gi|228701688|gb|EEL54179.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           Rock4-2]
 gi|228711224|gb|EEL63188.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           F65185]
 gi|228798999|gb|EEM45972.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228836551|gb|EEM81901.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|296325962|gb|ADH08890.1| Holliday junction DNA helicase B [Bacillus thuringiensis BMB171]
          Length = 333

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 190/333 (57%), Positives = 246/333 (73%), Gaps = 2/333 (0%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD E LLS   + EDAD+   LRP+TL ++ GQ +A  NL+VFIEAAK R E LDHVL  
Sbjct: 1   MD-ERLLSGESAYEDADLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLLY 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT L+  DVLFIDEIHRL   
Sbjct: 60  GPPGLGKTTLANIIANEMGVNVRTTSGPAIERPGDLAAVLTALQPGDVLFIDEIHRLHRS 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EE+LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTR G L+ PL+DRFG+  RL
Sbjct: 120 IEEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y ++ L  IV+R A++  + +   AA EIA R+RGTPRIA RLLRRVRDFA+V    T
Sbjct: 180 EYYTVDQLSAIVERTAEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRGNGT 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +T EI   AL  L +DK+G D +D + L  I   F GGPVG+ET+SA + E    IED+ 
Sbjct: 240 VTMEITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSATIGEESHTIEDVY 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY++Q GF+QRTPRGR++ P+A++H G++IP 
Sbjct: 300 EPYLLQIGFLQRTPRGRIVTPLAYEHFGMEIPK 332


>gi|148977428|ref|ZP_01814028.1| Holliday junction DNA helicase B [Vibrionales bacterium SWAT-3]
 gi|145963380|gb|EDK28645.1| Holliday junction DNA helicase B [Vibrionales bacterium SWAT-3]
          Length = 338

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 193/335 (57%), Positives = 251/335 (74%), Gaps = 3/335 (0%)

Query: 1   MMDREGLLSRN---VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M++ + L++ +      ED     +RP+ L ++ GQ      +++FI+AA+ R EALDH+
Sbjct: 1   MIEADRLIAPDNPVFKDEDVIDRAIRPKALADYQGQDHVRDQMEIFIKAAQLRNEALDHL 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTLA +VA E+ VN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRL
Sbjct: 61  LIFGPPGLGKTTLANIVANEMDVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           S +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI 
Sbjct: 121 SPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIT 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            RL +Y++EDL+ IVQR A   GL++  E A E+A R+RGTPRIA RLLRRVRD+AEV  
Sbjct: 181 QRLEYYKVEDLQNIVQRSADCLGLSMEAEGALEVARRARGTPRIANRLLRRVRDYAEVKG 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
              I  E+AD+AL  L +D  GFD +D + L  I   FGGGPVGI+ ++A + E +D IE
Sbjct: 241 DGHICPEVADSALNMLDVDAKGFDYMDRKLLLAIMEKFGGGPVGIDNMAAAIGEEKDTIE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           D++EPY+IQQG++QRTPRGR+    A+ H GID+P
Sbjct: 301 DVLEPYLIQQGYLQRTPRGRIATDRAYLHFGIDLP 335


>gi|119472453|ref|ZP_01614552.1| Holliday junction helicase, subunit B [Alteromonadales bacterium
           TW-7]
 gi|119444890|gb|EAW26189.1| Holliday junction helicase, subunit B [Alteromonadales bacterium
           TW-7]
          Length = 335

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 189/332 (56%), Positives = 244/332 (73%), Gaps = 1/332 (0%)

Query: 1   MMDREGLLSR-NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+     + ED+    +RP+ L ++ GQ      +++FIEAA++R EALDH+L 
Sbjct: 1   MIEADRLIDATEKTNEDSIDRAIRPKLLADYRGQPHVKQQMEIFIEAARSRDEALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA EL VN ++TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANELNVNIKTTSGPVLEKAGDLAALLTNLEEGDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEEILYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 QVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY +EDL  IV R A    L + D+ A EIA RSRGTPRIA RLLRRVRD+ +V    
Sbjct: 181 LEFYSVEDLSHIVGRSAHYLELEMCDDGASEIAKRSRGTPRIANRLLRRVRDYTQVKSDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           T+  ++A  AL  + +DK GFD +D +YL  I   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 TVNADVAQQALDMIDVDKSGFDYMDRKYLLAIIEKFMGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           IEP++IQQGFIQRTPRGR++   A+ H G+  
Sbjct: 301 IEPFLIQQGFIQRTPRGRIVSDNAYHHFGLLP 332


>gi|152979831|ref|YP_001352001.1| Holliday junction DNA helicase RuvB [Janthinobacterium sp.
           Marseille]
 gi|172049085|sp|A6SUQ4|RUVB_JANMA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|151279908|gb|ABR88318.1| holliday junction DNA helicase [Janthinobacterium sp. Marseille]
          Length = 352

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 188/325 (57%), Positives = 243/325 (74%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           +   + E+A    LRP+ L+E+ GQ +    L++FI AA+ R EALDH L  GPPGLGKT
Sbjct: 17  TPASANEEAIERALRPKQLDEYVGQEKIRGQLEIFITAARQRHEALDHTLLFGPPGLGKT 76

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           TLA ++ARE+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA
Sbjct: 77  TLAHIIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPA 136

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +ED+Q+D+M+GEGP+ARSV+++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY   +L
Sbjct: 137 LEDYQIDIMIGEGPAARSVRLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTPLEL 196

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             IV R + L    + ++ A EIA RSRGTPRIA RLLRRVRD+AEV     IT+ +ADA
Sbjct: 197 TKIVTRSSALLNAPIDEDGAFEIAKRSRGTPRIANRLLRRVRDYAEVKGNGKITKAMADA 256

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL+ L +D +GFD +D + L  +   F GGPVG++ ++A + E RD IED++EPY+IQQG
Sbjct: 257 ALVMLDVDPVGFDLMDRKLLEAVLFKFNGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQG 316

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIPH 333
           F+QRTPRGR+  P+A+ H G+  P 
Sbjct: 317 FLQRTPRGRIATPVAYAHFGVTAPQ 341


>gi|218899589|ref|YP_002448000.1| Holliday junction DNA helicase RuvB [Bacillus cereus G9842]
 gi|228902948|ref|ZP_04067089.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus
           thuringiensis IBL 4222]
 gi|228910256|ref|ZP_04074074.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus
           thuringiensis IBL 200]
 gi|228967496|ref|ZP_04128524.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|226725451|sp|B7IIT2|RUVB_BACC2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|218540807|gb|ACK93201.1| Holliday junction DNA helicase RuvB [Bacillus cereus G9842]
 gi|228792211|gb|EEM39785.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|228849420|gb|EEM94256.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus
           thuringiensis IBL 200]
 gi|228856732|gb|EEN01251.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus
           thuringiensis IBL 4222]
          Length = 333

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 189/333 (56%), Positives = 246/333 (73%), Gaps = 2/333 (0%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD E LLS   + ED+D+   LRP+TL ++ GQ +A  NL+VFIEAAK R E LDHVL  
Sbjct: 1   MD-ERLLSGESAYEDSDLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLLY 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT L+  DVLFIDEIHRL   
Sbjct: 60  GPPGLGKTTLANIIANEMGVNVRTTSGPAIERPGDLAAVLTALQPGDVLFIDEIHRLHRS 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EE+LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTR G L+ PL+DRFG+  RL
Sbjct: 120 IEEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y ++ L  IV+R A++  + +   AA EIA R+RGTPRIA RLLRRVRDFA+V    T
Sbjct: 180 EYYTVDQLSAIVERTAEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRGNGT 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +T EI   AL  L +DK+G D +D + L  I   F GGPVG+ET+SA + E    IED+ 
Sbjct: 240 VTMEITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSATIGEESHTIEDVY 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY++Q GF+QRTPRGR++ P+A++H G++IP 
Sbjct: 300 EPYLLQIGFLQRTPRGRIVTPLAYEHFGMEIPK 332


>gi|15677115|ref|NP_274267.1| Holliday junction DNA helicase B [Neisseria meningitidis MC58]
 gi|121634936|ref|YP_975181.1| Holliday junction DNA helicase B [Neisseria meningitidis FAM18]
 gi|161870086|ref|YP_001599256.1| Holliday junction DNA helicase RuvB [Neisseria meningitidis 053442]
 gi|254805023|ref|YP_003083244.1| holliday junction DNA helicase [Neisseria meningitidis alpha14]
 gi|20140280|sp|Q9JZ86|RUVB_NEIMB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|166231505|sp|A1KU52|RUVB_NEIMF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|189046039|sp|A9LZC3|RUVB_NEIM0 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|7226483|gb|AAF41624.1| Holliday junction DNA helicase RuvB [Neisseria meningitidis MC58]
 gi|120866642|emb|CAM10393.1| putative Holliday junction DNA helicase [Neisseria meningitidis
           FAM18]
 gi|161595639|gb|ABX73299.1| Holliday junction DNA helicase [Neisseria meningitidis 053442]
 gi|254668565|emb|CBA06048.1| holliday junction DNA helicase [Neisseria meningitidis alpha14]
 gi|325132573|gb|EGC55266.1| Holliday junction DNA helicase RuvB [Neisseria meningitidis M6190]
 gi|325134509|gb|EGC57154.1| Holliday junction DNA helicase RuvB [Neisseria meningitidis M13399]
 gi|325138346|gb|EGC60915.1| Holliday junction DNA helicase RuvB [Neisseria meningitidis
           ES14902]
 gi|325140527|gb|EGC63048.1| Holliday junction DNA helicase RuvB [Neisseria meningitidis CU385]
 gi|325142486|gb|EGC64890.1| Holliday junction DNA helicase RuvB [Neisseria meningitidis
           961-5945]
 gi|325144612|gb|EGC66911.1| Holliday junction DNA helicase RuvB [Neisseria meningitidis
           M01-240013]
 gi|325198377|gb|ADY93833.1| Holliday junction DNA helicase RuvB [Neisseria meningitidis G2136]
 gi|325202063|gb|ADY97517.1| Holliday junction DNA helicase RuvB [Neisseria meningitidis
           M01-240149]
 gi|325205980|gb|ADZ01433.1| Holliday junction DNA helicase RuvB [Neisseria meningitidis
           M04-240196]
          Length = 343

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 198/319 (62%), Positives = 246/319 (77%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           +QE+     LRP+TL+++ GQ +A   L +FI+AAK R EALDHVL  GPPGLGKTTLA 
Sbjct: 23  AQEELLERALRPKTLDDYIGQDKAKEQLAIFIQAAKKRGEALDHVLLFGPPGLGKTTLAH 82

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++A+ELGVN R TSGPV+ +AGDLAALLTNL+  DVLFIDEIHRLS +VEEILYPA+ED+
Sbjct: 83  IIAKELGVNLRQTSGPVLERAGDLAALLTNLDPHDVLFIDEIHRLSPVVEEILYPALEDY 142

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           +LD+M+GEGP+ARSVKI+L  FTLI ATTR G+LTNPL+DRFGI  RL FYE  DL TIV
Sbjct: 143 RLDIMIGEGPAARSVKIDLPPFTLIGATTRAGMLTNPLRDRFGIVSRLEFYENRDLTTIV 202

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R A+L  L +++E A EIA RSRGTPRIA RLLRRVRDFA+V +  TI   IADAAL  
Sbjct: 203 SRSAQLLQLDMSEEGAEEIAKRSRGTPRIANRLLRRVRDFADVKNNGTIDGGIADAALSM 262

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D  G D +D ++L  +   FGGGPVG++ ++A + E  D IED+IEPY+IQQGF+QR
Sbjct: 263 LDVDAQGLDVMDRKFLEAVLHKFGGGPVGLDNVAAAIGESTDTIEDVIEPYLIQQGFLQR 322

Query: 313 TPRGRLLMPIAWQHLGIDI 331
           TPRGR+    A+ H G+ +
Sbjct: 323 TPRGRMATERAYLHFGLPV 341


>gi|282850100|ref|ZP_06259482.1| Holliday junction DNA helicase RuvB [Veillonella parvula ATCC
           17745]
 gi|282580289|gb|EFB85690.1| Holliday junction DNA helicase RuvB [Veillonella parvula ATCC
           17745]
          Length = 334

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 192/330 (58%), Positives = 243/330 (73%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M +   L+     +ED     LRP+   E+ GQ EA  NL V+I+AAK R EALDHVL  
Sbjct: 1   MNEEVRLVGNGEHEEDIWQYSLRPKLFNEYVGQEEAKGNLNVYIQAAKQRGEALDHVLLY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A ELGVNFR TSGP I K+GDLAA+LTNL+D DVLFIDEIHRLS  
Sbjct: 61  GPPGLGKTTLAGIIANELGVNFRITSGPAIEKSGDLAAILTNLDDHDVLFIDEIHRLSRS 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LY AMED+ +D+++G+GPSAR+V+I+L +FTL+ ATTR G L  PL+DRFGI  RL
Sbjct: 121 VEEVLYSAMEDYAIDIIIGKGPSARTVRIDLPKFTLVGATTRAGALAAPLRDRFGIINRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y+  +L+ IV R A++  + +    A EIA RSRGTPRIA RLL+RVRDFA+V     
Sbjct: 181 EYYKQPELEFIVSRAAEILNIGIVPTGASEIARRSRGTPRIANRLLKRVRDFAQVIGDGV 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           IT+EIAD AL RL +DKMG D++D R L  I   + GGPVGI+TI+A +SE RD IED+ 
Sbjct: 241 ITQEIADEALQRLYVDKMGLDRIDRRVLECIIEKYDGGPVGIDTIAAAISEERDTIEDVY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           EPY++Q GF+ RTPRGR+   +A++HLGI 
Sbjct: 301 EPYLMQLGFLGRTPRGRVATKLAYEHLGIS 330


>gi|218768245|ref|YP_002342757.1| Holliday junction DNA helicase RuvB [Neisseria meningitidis Z2491]
 gi|20140277|sp|Q9JUB0|RUVB_NEIMA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|121052253|emb|CAM08578.1| putative Holliday junction DNA helicase [Neisseria meningitidis
           Z2491]
 gi|254670095|emb|CBA05013.1| holliday junction DNA helicase [Neisseria meningitidis alpha153]
 gi|254673909|emb|CBA09693.1| holliday junction DNA helicase [Neisseria meningitidis alpha275]
 gi|261392495|emb|CAX50046.1| Holliday junction DNA helicase RuvB [Neisseria meningitidis 8013]
 gi|316985102|gb|EFV64055.1| holliday junction DNA helicase RuvB [Neisseria meningitidis H44/76]
 gi|319410492|emb|CBY90853.1| Holliday junction DNA helicase RuvB [Neisseria meningitidis WUE
           2594]
 gi|325200126|gb|ADY95581.1| Holliday junction DNA helicase RuvB [Neisseria meningitidis H44/76]
 gi|325208183|gb|ADZ03635.1| Holliday junction DNA helicase RuvB [Neisseria meningitidis
           NZ-05/33]
          Length = 343

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 197/319 (61%), Positives = 246/319 (77%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           +QE+     LRP+TL+++ GQ +A   L +FI+AAK R EALDHVL  GPPGLGKTTLA 
Sbjct: 23  AQEELLERALRPKTLDDYIGQHKAKEQLAIFIQAAKKRGEALDHVLLFGPPGLGKTTLAH 82

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++A+ELGVN R TSGPV+ +AGDLAALLTNL+  DVLFIDEIHRLS +VEEILYPA+ED+
Sbjct: 83  IIAKELGVNLRQTSGPVLERAGDLAALLTNLDPHDVLFIDEIHRLSPVVEEILYPALEDY 142

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           +LD+M+GEGP+ARSVKI+L  FTL+ ATTR G+LTNPL+DRFGI  RL FYE  DL TIV
Sbjct: 143 RLDIMIGEGPAARSVKIDLPPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYENRDLATIV 202

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R A+L  L +++E A EIA RSRGTPRIA RLLRRVRDFA+V +  TI   IADAAL  
Sbjct: 203 SRSAQLLQLDMSEEGAEEIAKRSRGTPRIANRLLRRVRDFADVKNNGTIDGGIADAALSM 262

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D  G D +D ++L  +   FGGGPVG++ ++A + E  D IED+IEPY+IQQGF+QR
Sbjct: 263 LDVDVQGLDVMDRKFLEAVLHKFGGGPVGLDNVAAAIGESTDTIEDVIEPYLIQQGFLQR 322

Query: 313 TPRGRLLMPIAWQHLGIDI 331
           TPRGR+    A+ H G+ +
Sbjct: 323 TPRGRMATERAYLHFGLPV 341


>gi|255291935|dbj|BAH90423.1| Holliday junction DNA helicase RuvB [uncultured bacterium]
          Length = 356

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 187/321 (58%), Positives = 237/321 (73%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           ++E+A    LRP+ L+E+ GQ +A   L++FI AA+ R EALDHVL  GPPGLGKTTL+ 
Sbjct: 27  AREEALERALRPKMLQEYVGQAKAREQLEIFIGAARKRGEALDHVLLFGPPGLGKTTLSH 86

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++A ELGVN R TSGPV+ K  DLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+
Sbjct: 87  IIAHELGVNLRQTSGPVLEKPRDLAALLTNLEKNDVLFIDEIHRLSPVVEEILYPALEDY 146

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           Q+D+M+GEGP+ARS+K+++  FTL+ ATTR G+LTNPL+DRFGI  RL FY  E+L  IV
Sbjct: 147 QIDIMIGEGPAARSIKLDVQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTPEELTRIV 206

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R A L  +    E A EIA RSRGTPRIA RLLRRVRD+A+V     I+R+IA  AL  
Sbjct: 207 TRSAGLLQVETDAEGAFEIARRSRGTPRIANRLLRRVRDYADVKGRGQISRQIAHDALAM 266

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D  GFD +D + L  +   F GGPVG++ I+A + E    IED+IEPY+IQQG++QR
Sbjct: 267 LDVDPEGFDVMDRKLLEAVIHRFDGGPVGLDNIAASIGEEPGTIEDVIEPYLIQQGYLQR 326

Query: 313 TPRGRLLMPIAWQHLGIDIPH 333
           TPRGR+    A++HLG+  P 
Sbjct: 327 TPRGRVATLAAYRHLGVAPPQ 347


>gi|229129700|ref|ZP_04258668.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           BDRD-Cer4]
 gi|228653817|gb|EEL09687.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           BDRD-Cer4]
          Length = 333

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 190/333 (57%), Positives = 246/333 (73%), Gaps = 2/333 (0%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD E LLS   + EDAD+   LRP+TL ++ GQ +A  NL+VFIEAAK R E LDHVL  
Sbjct: 1   MD-ERLLSGESAYEDADLEYSLRPQTLRQYIGQNKAKHNLEVFIEAAKMREETLDHVLLY 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT L+  DVLFIDEIHRL   
Sbjct: 60  GPPGLGKTTLANIIANEMGVNVRTTSGPAIERPGDLAAVLTALQPGDVLFIDEIHRLHRS 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EE+LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTR G L+ PL+DRFG+  RL
Sbjct: 120 IEEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y ++ L  IV+R A++  + +   AA EIA R+RGTPRIA RLLRRVRDFA+V    T
Sbjct: 180 EYYTVDQLSAIVERTAEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRGNGT 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +T EI   AL  L +DK+G D +D + L  I   F GGPVG+ET+SA + E    IED+ 
Sbjct: 240 VTMEITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSATIGEESHTIEDVY 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY++Q GF+QRTPRGR++ P+A++H G++IP 
Sbjct: 300 EPYLLQIGFLQRTPRGRIVTPLAYEHFGMEIPK 332


>gi|238916874|ref|YP_002930391.1| Holliday junction DNA helicase RuvB [Eubacterium eligens ATCC
           27750]
 gi|238872234|gb|ACR71944.1| Holliday junction DNA helicase RuvB [Eubacterium eligens ATCC
           27750]
          Length = 337

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 170/332 (51%), Positives = 239/332 (71%), Gaps = 1/332 (0%)

Query: 4   REGLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
            + ++S  +++ED    + LRP +L+++ GQ +  SNLKV+IEAAK R EALDHVLF GP
Sbjct: 6   EKRIISTQITEEDYGIENSLRPLSLDDYVGQNKVKSNLKVYIEAAKERGEALDHVLFYGP 65

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++A E+GVN + TSGP I K GD+AA+L NL + D+LF+DEIHRL+  VE
Sbjct: 66  PGLGKTTLAGIIANEMGVNIKVTSGPAIEKPGDMAAILNNLSEGDILFVDEIHRLNRQVE 125

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMED+++D+M+G+G +ARS+++ L +FTLI ATTR GLL+ PL+DRFG+   + F
Sbjct: 126 EVLYPAMEDYKIDIMIGKGATARSIRLELPQFTLIGATTRAGLLSAPLRDRFGVVSHMEF 185

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y + +L+ I+ R A +  + +  + A E+A RSRGTPR+A RLL+RVRDFA+V +   I 
Sbjct: 186 YTVPELEKIIIRSANVLNVDIDSDGAHELARRSRGTPRLANRLLKRVRDFAQVKYNGHIN 245

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           +++AD AL  L +D+ G D+ D   LT I   F GGPVGIET++A + E    +ED+ EP
Sbjct: 246 KDVADYALNLLDVDRDGLDRNDRVILTTIVDKFDGGPVGIETLAASIGEDSGTLEDVYEP 305

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           Y+IQ G+I RTPRGR+    A+ +LG     +
Sbjct: 306 YLIQNGYINRTPRGRVATKAAYDNLGRPFKQK 337


>gi|47566610|ref|ZP_00237432.1| Holliday junction DNA helicase RuvB [Bacillus cereus G9241]
 gi|229158035|ref|ZP_04286106.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           ATCC 4342]
 gi|47556640|gb|EAL14972.1| Holliday junction DNA helicase RuvB [Bacillus cereus G9241]
 gi|228625488|gb|EEK82244.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           ATCC 4342]
          Length = 333

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 189/333 (56%), Positives = 246/333 (73%), Gaps = 2/333 (0%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD E LLS   + EDAD+   LRP+TL ++ GQ +A  NL+VFIEAAK R E LDHVL  
Sbjct: 1   MD-ERLLSGESAYEDADLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLLY 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT L+  DVLFIDEIHRL   
Sbjct: 60  GPPGLGKTTLANIIANEMGVNVRTTSGPAIERPGDLAAVLTALQPGDVLFIDEIHRLHRS 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EE+LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTR G L+ PL+DRFG+  RL
Sbjct: 120 IEEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y ++ L  IV+R A++  + +   AA EIA R+RGTPRIA RLLRRVRDFA+V    T
Sbjct: 180 EYYTVDQLSEIVERTAEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRGNGT 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +T EI   AL  L +DK+G D +D + L  I   F GGPVG+ET+SA + E    IED+ 
Sbjct: 240 VTMEITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSATIGEESHTIEDVY 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY++Q GF+QRTPRGR++ P+A++H G+++P 
Sbjct: 300 EPYLLQIGFLQRTPRGRIVTPLAYEHFGMEMPK 332


>gi|313668358|ref|YP_004048642.1| Holliday junction DNA helicase [Neisseria lactamica ST-640]
 gi|309378614|emb|CBX22792.1| unnamed protein product [Neisseria lactamica Y92-1009]
 gi|313005820|emb|CBN87274.1| putative Holliday junction DNA helicase [Neisseria lactamica
           020-06]
          Length = 343

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 197/319 (61%), Positives = 246/319 (77%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           +QE+     LRP+TL+++ GQ +A   L +FI+AAK R EALDHVL  GPPGLGKTTLA 
Sbjct: 23  AQEELLERALRPKTLDDYIGQHKAKEQLAIFIQAAKKRGEALDHVLLFGPPGLGKTTLAH 82

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++A+ELGVN R TSGPV+ +AGDLAALLTNL+  DVLFIDEIHRLS +VEEILYPA+ED+
Sbjct: 83  IIAKELGVNLRQTSGPVLERAGDLAALLTNLDPHDVLFIDEIHRLSPVVEEILYPALEDY 142

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           +LD+M+GEGP+ARSVKI+L  FTL+ ATTR G+LTNPL+DRFGI  RL FYE  DL TIV
Sbjct: 143 RLDIMIGEGPAARSVKIDLPPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYENRDLATIV 202

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R A+L  L +++E A EIA RSRGTPRIA RLLRRVRDFA+V +  TI   IADAAL  
Sbjct: 203 SRSAQLLQLDMSEEGAEEIAKRSRGTPRIANRLLRRVRDFADVKNNGTIDGGIADAALSM 262

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D  G D +D ++L  +   FGGGPVG++ ++A + E  D IED+IEPY+IQQGF+QR
Sbjct: 263 LDVDAQGLDVMDRKFLEAVLHKFGGGPVGLDNVAAAIGESTDTIEDVIEPYLIQQGFLQR 322

Query: 313 TPRGRLLMPIAWQHLGIDI 331
           TPRGR+    A+ H G+ +
Sbjct: 323 TPRGRMATERAYLHFGLPV 341


>gi|254502080|ref|ZP_05114231.1| Holliday junction DNA helicase RuvB [Labrenzia alexandrii DFL-11]
 gi|222438151|gb|EEE44830.1| Holliday junction DNA helicase RuvB [Labrenzia alexandrii DFL-11]
          Length = 347

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 226/334 (67%), Positives = 279/334 (83%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D + ++S  +  ++ D S +RP+ L++F GQ +A +NLKVFI AAKAR EALDHVLFV
Sbjct: 1   MSDDQRIVSPEIRGDEID-STMRPQALDDFVGQAQARANLKVFIGAAKARGEALDHVLFV 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++ARELGVNFR+TSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRL+  
Sbjct: 60  GPPGLGKTTLAQIMARELGVNFRATSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLNPA 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMED+QLDL++GEGP+ARSVKI+L++FTL+AATTR+GLLT PL+DRFGIP+RL
Sbjct: 120 VEEVLYPAMEDYQLDLIIGEGPAARSVKIDLAKFTLVAATTRLGLLTTPLRDRFGIPVRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY + +L+ IV+RGA + G+ + ++ A EIA RSRGTPRIAGRLLRRVRDFA    A+ 
Sbjct: 180 EFYTVPELEHIVKRGASILGIGIAEDGALEIAKRSRGTPRIAGRLLRRVRDFAVFEGAEK 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           + R +AD AL +L +D  G D LD RYL  IA NFGGGPVGIETI+A LSEPRDAIE+++
Sbjct: 240 VDRALADKALRQLEVDGAGLDSLDRRYLNQIAVNFGGGPVGIETIAAALSEPRDAIEEIV 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           EPY+IQ GF+QRTPRGR+L P A+ HLG+ +P R
Sbjct: 300 EPYLIQNGFLQRTPRGRILTPTAFSHLGLAVPSR 333


>gi|325204227|gb|ADY99680.1| Holliday junction DNA helicase RuvB [Neisseria meningitidis
           M01-240355]
          Length = 343

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 197/319 (61%), Positives = 246/319 (77%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           +QE+     LRP+TL+++ GQ +A   L +FI+AAK R EALDHVL  GPPGLGKTTLA 
Sbjct: 23  AQEELLERALRPKTLDDYIGQHKAKEQLAIFIQAAKKRGEALDHVLLFGPPGLGKTTLAH 82

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++A+ELGVN R TSGPV+ +AGDLAALLTNL+  DVLFIDEIHRLS +VEEILYPA+ED+
Sbjct: 83  IIAKELGVNLRQTSGPVLERAGDLAALLTNLDPHDVLFIDEIHRLSPVVEEILYPALEDY 142

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           +LD+M+GEGP+ARSVKI+L  FTL+ ATTR G+LTNPL+DRFGI  RL FYE  DL TIV
Sbjct: 143 RLDIMIGEGPAARSVKIDLPPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYENRDLTTIV 202

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R A+L  L +++E A EIA RSRGTPRIA RLLRRVRDFA+V +  TI   IADAAL  
Sbjct: 203 SRSAQLLQLDMSEEGAEEIAKRSRGTPRIANRLLRRVRDFADVKNNGTIDGGIADAALSM 262

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D  G D +D ++L  +   FGGGPVG++ ++A + E  D IED+IEPY+IQQGF+QR
Sbjct: 263 LDVDAQGLDVMDRKFLEAVLHKFGGGPVGLDNVAAAIGESTDTIEDVIEPYLIQQGFLQR 322

Query: 313 TPRGRLLMPIAWQHLGIDI 331
           TPRGR+    A+ H G+ +
Sbjct: 323 TPRGRMATERAYLHFGLPV 341


>gi|167627947|ref|YP_001678447.1| Holliday junction DNA helicase RuvB [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
 gi|189046033|sp|B0U0B6|RUVB_FRAP2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|167597948|gb|ABZ87946.1| Holliday junction DNA helicase, subunit B [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
          Length = 348

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 192/336 (57%), Positives = 253/336 (75%), Gaps = 3/336 (0%)

Query: 1   MMDREGLLSRNVSQ---EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M++ + ++S N  Q   E++    +RP+TL E+ GQ      +++FI+AAK+R +ALDH 
Sbjct: 1   MIETDRIISANTVQTKDENSIDRAIRPKTLAEYEGQPAVREQMEIFIQAAKSRKDALDHT 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTL+ ++A E+ V  + TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRL
Sbjct: 61  LIFGPPGLGKTTLSNIIANEMEVELKQTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           S ++EEILYPAMED+QLD+M+GEGP+ARS+KI+L  FTL+ ATTR GLLT+PL+DRFGI 
Sbjct: 121 SPVIEEILYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLVGATTRAGLLTSPLRDRFGII 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            RL FY ++DL  IV R AKL  L +TD+ A EIA RSRGTPRIA RLLRRVRD+A+V  
Sbjct: 181 QRLEFYSVDDLAKIVYRSAKLLDLDITDDGANEIAKRSRGTPRIANRLLRRVRDYAQVKA 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
           +  I+ +IAD AL  L +D +GFD +D +YL  +   FGGGPVG++T++A LSE +  IE
Sbjct: 241 SGVISYDIADKALTMLKVDPVGFDHMDHKYLLTLMEKFGGGPVGLDTMAAALSEEKGTIE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           D+IEPY+IQQG++ RT RGR+   +A+ H  + IP 
Sbjct: 301 DVIEPYLIQQGYLMRTARGRIATLLAYNHFKLKIPD 336


>gi|118580736|ref|YP_901986.1| Holliday junction DNA helicase RuvB [Pelobacter propionicus DSM
           2379]
 gi|166231534|sp|A1ARF8|RUVB_PELPD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|118503446|gb|ABK99928.1| Holliday junction DNA helicase RuvB [Pelobacter propionicus DSM
           2379]
          Length = 338

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 187/328 (57%), Positives = 247/328 (75%), Gaps = 1/328 (0%)

Query: 6   GLLSRNVSQEDAD-ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
             ++ +  ++D+   S LRP++L+++ GQ +   NL++FIEAA+ R EALDHVL  GPPG
Sbjct: 3   RAIAADKREDDSQFDSTLRPKSLDDYIGQEKIKGNLRLFIEAARGRGEALDHVLLYGPPG 62

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLA +VA E+GVN +STSGPVI + GDLAA+LTNLE  DVLFIDEIHRLS +VEEI
Sbjct: 63  LGKTTLANIVACEMGVNLKSTSGPVIERPGDLAAILTNLEPHDVLFIDEIHRLSHVVEEI 122

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPAMEDFQLD+++G+GPSARS+K++L RFTL+ ATTR GLL++PL+DRFG+  R++FY 
Sbjct: 123 LYPAMEDFQLDIIIGQGPSARSIKLDLPRFTLVGATTRAGLLSSPLRDRFGVISRMDFYT 182

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            ++L TI+ R +++ G+ +    A E++ RSRGTPRIA RLLRRVRDFA+V     ITR+
Sbjct: 183 HDELATIITRSSRILGMEIEPRGADELSRRSRGTPRIANRLLRRVRDFAQVRADGVITRQ 242

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +    L  L ID+MGFD +D   L  I   F GGPVG++TI+A +SE  D IED+ EPYM
Sbjct: 243 VVKETLALLEIDEMGFDHMDRMILLTIIDKFSGGPVGLDTIAAAISEESDTIEDVYEPYM 302

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           IQ GF+ RTPRGR+    A++H G  +P
Sbjct: 303 IQNGFLNRTPRGRVATLAAYEHFGRSVP 330


>gi|324328323|gb|ADY23583.1| Holliday junction DNA helicase RuvA [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 333

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 188/333 (56%), Positives = 246/333 (73%), Gaps = 2/333 (0%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD E LLS   + EDAD+   LRP+TL ++ GQ +A  NL+VFIEAAK R E LDHVL  
Sbjct: 1   MD-ERLLSGESAYEDADLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLLY 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT+L+  DVLFIDEIHRL   
Sbjct: 60  GPPGLGKTTLANIIANEMGVNVRTTSGPAIERPGDLAAVLTSLQPGDVLFIDEIHRLHRS 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EE+LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTR G L+ PL+DRFG+  RL
Sbjct: 120 IEEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y ++ L  IV+R  ++  + +   AA EIA R+RGTPRIA RLLRRVRDFA+V    T
Sbjct: 180 EYYTVDQLSAIVERTGEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRGNGT 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +T EI   AL  L +DK+G D +D + L  I   F GGPVG+ET+SA + E    IED+ 
Sbjct: 240 VTMEITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSATIGEESHTIEDVY 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY++Q GF+QRTPRGR++ P+A++H G+++P 
Sbjct: 300 EPYLLQIGFLQRTPRGRIVTPLAYEHFGMEMPE 332


>gi|229198548|ref|ZP_04325251.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           m1293]
 gi|228584933|gb|EEK43048.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           m1293]
          Length = 333

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 188/333 (56%), Positives = 246/333 (73%), Gaps = 2/333 (0%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD E LLS   + EDAD+   LRP+TL ++ GQ +A  NL+VFIEAAK R E LDHVL  
Sbjct: 1   MD-ERLLSGESAYEDADLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLLY 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT+L+  DVLFIDEIHRL   
Sbjct: 60  GPPGLGKTTLANIIANEMGVNVRTTSGPAIERPGDLAAVLTSLQPGDVLFIDEIHRLHRS 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EE+LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTR G L+ PL+DRFG+  RL
Sbjct: 120 IEEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y ++ L  IV+R  ++  + +   AA EIA R+RGTPRIA RLLRRVRDFA+V    T
Sbjct: 180 EYYTVDQLSEIVERTGEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRGNGT 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +T EI   AL  L +DK+G D +D + L  I   F GGPVG+ET+SA + E    IED+ 
Sbjct: 240 VTMEITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSATIGEESHTIEDVY 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY++Q GF+QRTPRGR++ P+A++H G+++P 
Sbjct: 300 EPYLLQIGFLQRTPRGRIVTPLAYEHFGMEMPK 332


>gi|160892585|ref|ZP_02073375.1| hypothetical protein CLOL250_00114 [Clostridium sp. L2-50]
 gi|156865626|gb|EDO59057.1| hypothetical protein CLOL250_00114 [Clostridium sp. L2-50]
          Length = 335

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 174/326 (53%), Positives = 229/326 (70%), Gaps = 1/326 (0%)

Query: 6   GLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
            ++S     E+ +    LRP+ L+E+ GQ +   NLK+FIEAAK R E LDH+L  GPPG
Sbjct: 6   RIISTEADIEELNSEYSLRPKYLDEYIGQNKVKENLKIFIEAAKRRNEPLDHLLLYGPPG 65

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLA +VA E+GVN + TSGP I K G+LAA+L NL + D+LFIDEIHRL+  VEE+
Sbjct: 66  LGKTTLASIVANEMGVNIKITSGPAIEKPGELAAILNNLSENDILFIDEIHRLNSQVEEV 125

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPAMEDF +D+++G+G  ARS++++L +FTLI ATTR G+LT PL+DRFG+  RL FY 
Sbjct: 126 LYPAMEDFAIDVVIGKGAGARSIRLDLPKFTLIGATTRAGMLTAPLRDRFGMVDRLEFYS 185

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            E+LK IV R   + G+   D  A EIA RSRGTPR+A RLL+R RDFA+V H   I  E
Sbjct: 186 PEELKQIVIRSGDVLGVETDDAGALEIAKRSRGTPRLANRLLKRCRDFAQVCHNGCIDYE 245

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +A  AL +L +D MG D  D   L  +   FGGGPVG++T++A + E    IED+ EPY+
Sbjct: 246 VAKTALDKLEVDSMGLDNTDRNILMTMIEKFGGGPVGLDTLAAAIGEDSGTIEDVYEPYL 305

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGID 330
           I+ GFI RTPRGR++    ++H G+D
Sbjct: 306 IKNGFINRTPRGRVVTERCYKHFGLD 331


>gi|197334291|ref|YP_002155715.1| holliday junction DNA helicase RuvB [Vibrio fischeri MJ11]
 gi|226698788|sp|B5FCQ2|RUVB_VIBFM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|197315781|gb|ACH65228.1| holliday junction DNA helicase RuvB [Vibrio fischeri MJ11]
          Length = 337

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 193/337 (57%), Positives = 253/337 (75%), Gaps = 3/337 (0%)

Query: 1   MMDREGLLSRNVS---QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M++ + L++ +     +ED     +RP+ L+++ GQ      +++FI+AA+ R EALDH+
Sbjct: 1   MIEADRLIAADNPTFREEDVIDRAIRPKKLDDYQGQDHVRGQMEIFIKAAQMREEALDHL 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAALLTNLE+ D+LFIDEIHRL
Sbjct: 61  LIFGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAALLTNLEENDILFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           S +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI 
Sbjct: 121 SPMVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIV 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            RL +Y++EDL+ IVQR A    L++  E A E+A R+RGTPRIA RLLRRVRD+AEV  
Sbjct: 181 QRLEYYKVEDLQHIVQRSADCLNLSMESEGALEVARRARGTPRIANRLLRRVRDYAEVMS 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
              I+ +IAD AL  L +D  GFD +D + L  I   F GGPVG++ I+A + E RD IE
Sbjct: 241 DGNISSDIADKALNMLDVDVRGFDYMDRKLLLAIMEKFDGGPVGLDNIAAAIGEERDTIE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           D+IEPY+IQQG++QRTPRGR++   A+ H GID P +
Sbjct: 301 DVIEPYLIQQGYLQRTPRGRIVSDRAYLHFGIDKPDK 337


>gi|304387495|ref|ZP_07369684.1| crossover junction ATP-dependent DNA helicase RuvB [Neisseria
           meningitidis ATCC 13091]
 gi|304338382|gb|EFM04503.1| crossover junction ATP-dependent DNA helicase RuvB [Neisseria
           meningitidis ATCC 13091]
 gi|308389336|gb|ADO31656.1| putative Holliday junction DNA helicase [Neisseria meningitidis
           alpha710]
 gi|325130310|gb|EGC53077.1| Holliday junction DNA helicase RuvB [Neisseria meningitidis
           OX99.30304]
 gi|325136271|gb|EGC58879.1| Holliday junction DNA helicase RuvB [Neisseria meningitidis M0579]
          Length = 343

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 198/319 (62%), Positives = 246/319 (77%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           +QE+     LRP+TL+++ GQ +A   L +FI+AAK R EALDHVL  GPPGLGKTTLA 
Sbjct: 23  AQEELLERALRPKTLDDYIGQHKAKEQLAIFIQAAKKRGEALDHVLLFGPPGLGKTTLAH 82

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++A+ELGVN R TSGPV+ +AGDLAALLTNL+  DVLFIDEIHRLS +VEEILYPA+ED+
Sbjct: 83  IIAKELGVNLRQTSGPVLERAGDLAALLTNLDPHDVLFIDEIHRLSPVVEEILYPALEDY 142

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           +LD+M+GEGP+ARSVKI+L  FTLI ATTR G+LTNPL+DRFGI  RL FYE  DL TIV
Sbjct: 143 RLDIMIGEGPAARSVKIDLPPFTLIGATTRAGMLTNPLRDRFGIVSRLEFYENRDLTTIV 202

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R A+L  L +++E A EIA RSRGTPRIA RLLRRVRDFA+V +  TI   IADAAL  
Sbjct: 203 SRSAQLLQLDMSEEGAEEIAKRSRGTPRIANRLLRRVRDFADVKNNGTIDGGIADAALSM 262

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D  G D +D ++L  +   FGGGPVG++ ++A + E  D IED+IEPY+IQQGF+QR
Sbjct: 263 LDVDAQGLDVMDRKFLEAVLHKFGGGPVGLDNVAAAIGESTDTIEDVIEPYLIQQGFLQR 322

Query: 313 TPRGRLLMPIAWQHLGIDI 331
           TPRGR+    A+ H G+ +
Sbjct: 323 TPRGRMATERAYLHFGLPV 341


>gi|197301662|ref|ZP_03166732.1| hypothetical protein RUMLAC_00388 [Ruminococcus lactaris ATCC
           29176]
 gi|197299102|gb|EDY33632.1| hypothetical protein RUMLAC_00388 [Ruminococcus lactaris ATCC
           29176]
          Length = 332

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 175/329 (53%), Positives = 240/329 (72%), Gaps = 1/329 (0%)

Query: 6   GLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
            +++    +ED  I   LRP+ L E+ GQ +A   L ++IEAAKAR EALDHVLF GPPG
Sbjct: 4   RIITTENLEEDIKIEGQLRPQHLTEYIGQEKAKKTLGIYIEAAKARGEALDHVLFYGPPG 63

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLA ++A E+GVN + TSGP I K G++AA+L  L++ DVLF+DEIHRL+  VEE+
Sbjct: 64  LGKTTLAGIIANEMGVNLKVTSGPAIEKPGEMAAILNGLQENDVLFVDEIHRLNRQVEEV 123

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPAMED+ +D+M+G+GP ARSV++NL +FTL+ ATTR G+LT PL+DRFG+  RL FY 
Sbjct: 124 LYPAMEDYAIDIMIGKGPGARSVRLNLPKFTLVGATTRAGMLTAPLRDRFGVVNRLEFYT 183

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
             +L TI+ R A++ G+ + +  A E+A RSRGTPR+A RLL+RVRDFA+V +   IT +
Sbjct: 184 DRELMTIILRSARVLGVEIEESGAMELARRSRGTPRLANRLLKRVRDFAQVKYDGVITEK 243

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +A+ AL  L +DK G D +D   L  +   F GGPVG++T++A +SE    +ED+ EPY+
Sbjct: 244 VANYALDLLDVDKYGLDHIDRSILLTMIEKFQGGPVGLDTLAASISEDAGTLEDVYEPYL 303

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           ++ GFIQRTPRGR++  +A+ HLGI  P 
Sbjct: 304 LKNGFIQRTPRGRVVTALAYSHLGIPQPQ 332


>gi|59711559|ref|YP_204335.1| Holliday junction DNA helicase B [Vibrio fischeri ES114]
 gi|71649491|sp|Q5E699|RUVB_VIBF1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|59479660|gb|AAW85447.1| ATP-dependent DNA helicase, component of RuvABC resolvasome [Vibrio
           fischeri ES114]
          Length = 337

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 195/337 (57%), Positives = 254/337 (75%), Gaps = 3/337 (0%)

Query: 1   MMDREGLLSRNVS---QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M++ + L++ +     +ED     +RP+ L+++ GQ    S +++FI+AA+ R EALDH+
Sbjct: 1   MIEADRLIAADNPTFREEDVIDRAIRPKKLDDYQGQDHVRSQMEIFIKAAQMREEALDHL 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAALLTNLE+ D+LFIDEIHRL
Sbjct: 61  LIFGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAALLTNLEENDILFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           S +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI 
Sbjct: 121 SPMVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIV 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            RL +Y++EDL+ IVQR A    L++  E A E+A R+RGTPRIA RLLRRVRD+AEV  
Sbjct: 181 QRLEYYKVEDLQHIVQRSADCLNLSMESEGALEVARRARGTPRIANRLLRRVRDYAEVMS 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
              I+ EIAD AL  L +D  GFD +D + L  I   F GGPVG++ I+A + E RD IE
Sbjct: 241 DGNISSEIADKALNMLDVDVRGFDYMDRKLLLAIMEKFDGGPVGLDNIAAAIGEERDTIE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           D+IEPY+IQQG++QRTPRGR++   A+ H GID P +
Sbjct: 301 DVIEPYLIQQGYLQRTPRGRIVSDRAYLHFGIDKPDK 337


>gi|196044785|ref|ZP_03112019.1| Holliday junction DNA helicase RuvB [Bacillus cereus 03BB108]
 gi|225866401|ref|YP_002751779.1| Holliday junction DNA helicase RuvB [Bacillus cereus 03BB102]
 gi|229186659|ref|ZP_04313820.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           BGSC 6E1]
 gi|254767410|sp|C1ESW4|RUVB_BACC3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|196024273|gb|EDX62946.1| Holliday junction DNA helicase RuvB [Bacillus cereus 03BB108]
 gi|225788653|gb|ACO28870.1| Holliday junction DNA helicase RuvB [Bacillus cereus 03BB102]
 gi|228596918|gb|EEK54577.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           BGSC 6E1]
          Length = 333

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 188/333 (56%), Positives = 246/333 (73%), Gaps = 2/333 (0%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD E LLS   + EDAD+   LRP+TL ++ GQ +A  NL+VFIEAAK R E LDHVL  
Sbjct: 1   MD-ERLLSGESAYEDADLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLLY 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT+L+  DVLFIDEIHRL   
Sbjct: 60  GPPGLGKTTLANIIANEMGVNVRTTSGPAIERPGDLAAVLTSLQPGDVLFIDEIHRLHRS 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EE+LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTR G L+ PL+DRFG+  RL
Sbjct: 120 IEEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y ++ L  IV+R  ++  + +   AA EIA R+RGTPRIA RLLRRVRDFA+V    T
Sbjct: 180 EYYTVDQLSAIVERTGEVFEVEINSLAALEIARRARGTPRIANRLLRRVRDFAQVRGNGT 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +T EI   AL  L +DK+G D +D + L  I   F GGPVG+ET+SA + E    IED+ 
Sbjct: 240 VTMEITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSATIGEESHTIEDVY 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY++Q GF+QRTPRGR++ P+A++H G+++P 
Sbjct: 300 EPYLLQIGFLQRTPRGRIVTPLAYEHFGMEMPK 332


>gi|261252502|ref|ZP_05945075.1| holliday junction DNA helicase RuvB [Vibrio orientalis CIP 102891]
 gi|260935893|gb|EEX91882.1| holliday junction DNA helicase RuvB [Vibrio orientalis CIP 102891]
          Length = 334

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 191/333 (57%), Positives = 250/333 (75%), Gaps = 3/333 (0%)

Query: 1   MMDREGLLSRNVS---QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M++ + L++ + +   +ED     +RP+ L+++ GQ      +++FI+AA+ R EALDH+
Sbjct: 1   MIEADRLIAPDNTVYKEEDVIDRAIRPKKLDDYKGQDHVRGQMEIFIKAAQLRNEALDHL 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTLA +VA E+ VN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRL
Sbjct: 61  LIFGPPGLGKTTLANIVANEMDVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           S +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI 
Sbjct: 121 SPMVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIT 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            RL +Y+I DL+ IVQR A   GL++  E A E+A R+RGTPRIA RLLRRVRD+AEV  
Sbjct: 181 QRLEYYKIPDLQNIVQRSADCLGLSMESEGALEVARRARGTPRIANRLLRRVRDYAEVKG 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
              I  E+AD AL  L +D  GFD +D + L  I   FGGGPVGI+ ++A + E +D IE
Sbjct: 241 NGHICAEVADKALNMLDVDAQGFDYMDRKLLLAIMEKFGGGPVGIDNMAAAIGEEKDTIE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           D++EPY+IQQG++QRTPRGR+    A+ H GI+
Sbjct: 301 DVLEPYLIQQGYLQRTPRGRIATDRAYLHFGIE 333


>gi|317048519|ref|YP_004116167.1| Holliday junction DNA helicase RuvB [Pantoea sp. At-9b]
 gi|316950136|gb|ADU69611.1| Holliday junction DNA helicase RuvB [Pantoea sp. At-9b]
          Length = 334

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 190/331 (57%), Positives = 251/331 (75%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSRN-VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S + V++E++    +RP+ L E+ GQ +    +++FI+AA+ R +ALDH+L 
Sbjct: 1   MIEADRLVSASSVNEEESLDRAIRPKLLAEYVGQPQVREQMEIFIKAAQLRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY + DL+ IV R A   GL +++E A EIA RSRGTPRIA RLLRRVRDFAEV    
Sbjct: 181 LEFYNVADLQHIVGRSAACLGLTLSEEGALEIARRSRGTPRIANRLLRRVRDFAEVRANG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            ++ E++ +AL  L +D  GFD +D + L  I   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 NMSGEVSASALDMLNVDSQGFDYMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           IEP++IQQGFIQRTPRGR+    A++H GI 
Sbjct: 301 IEPFLIQQGFIQRTPRGRMATQHAYRHFGIA 331


>gi|126174264|ref|YP_001050413.1| Holliday junction DNA helicase RuvB [Shewanella baltica OS155]
 gi|166231552|sp|A3D481|RUVB_SHEB5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|125997469|gb|ABN61544.1| Holliday junction DNA helicase RuvB [Shewanella baltica OS155]
          Length = 334

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 195/334 (58%), Positives = 252/334 (75%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+   +  Q+++    +RP+ L+E+TGQ    + LKVFI+AAK R EALDH+L 
Sbjct: 1   MIEADRLIQPQIQAQDESIDRAMRPKMLDEYTGQDHTRAQLKVFIQAAKNRNEALDHMLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN +STSGPV+ KAGDLAALLTNLE  DVLFIDEIHRLS 
Sbjct: 61  YGPPGLGKTTLAMIVANEMGVNIKSTSGPVLEKAGDLAALLTNLESGDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ ATTR G LT+PL+ RFGIP+R
Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGALTSPLRARFGIPLR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY I+DL TIV R A++  L +  E A EIA RSRGTPRIA RLLRRVRD+A+V H  
Sbjct: 181 LEFYNIKDLSTIVTRSAQVMELDIDAEGAFEIARRSRGTPRIANRLLRRVRDYAQVKHDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            +T+ +A+ AL  L +D  GFD +D + L  I   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 AVTKFVAEHALDLLDVDSEGFDYMDRKLLLAIIDKFIGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +EP++IQQGFIQRTPRGR+    A+QH  +  P 
Sbjct: 301 LEPFLIQQGFIQRTPRGRIATARAYQHFELIKPE 334


>gi|260222295|emb|CBA31716.1| Holliday junction ATP-dependent DNA helicase ruvB [Curvibacter
           putative symbiont of Hydra magnipapillata]
          Length = 355

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 189/320 (59%), Positives = 239/320 (74%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           + E+A    LRP+ L+E+ GQ +    L++FI AAK R EALDHVL  GPPGLGKTTL+ 
Sbjct: 26  NSEEAIERALRPKLLDEYVGQAKVREQLEIFIGAAKKRDEALDHVLLFGPPGLGKTTLSH 85

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++A ELGVN R TSGPV+ K  DLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+
Sbjct: 86  IIAHELGVNLRQTSGPVLEKPKDLAALLTNLEKNDVLFIDEIHRLSAVVEEILYPALEDY 145

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           ++D+M+GEGP+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  E+L  IV
Sbjct: 146 KIDIMIGEGPAARSIKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTNEELARIV 205

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           +R A L G+ + +    EIA RSRGTPRIA RLLRRVRDFAEV     IT +IA+ AL  
Sbjct: 206 KRSAGLLGVPMDENGGFEIARRSRGTPRIANRLLRRVRDFAEVKGDGKITLDIANRALAM 265

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D  GFD +D + L  +   F GGPVG++ I+A + E R+ IED+IEPY+IQQG++QR
Sbjct: 266 LDVDPQGFDLMDRKLLEAVIHRFDGGPVGLDNIAASIGEERETIEDVIEPYLIQQGYLQR 325

Query: 313 TPRGRLLMPIAWQHLGIDIP 332
           TPRGR+    A++HLG+  P
Sbjct: 326 TPRGRIATLAAYRHLGVTAP 345


>gi|117920402|ref|YP_869594.1| Holliday junction DNA helicase RuvB [Shewanella sp. ANA-3]
 gi|166231556|sp|A0KWL9|RUVB_SHESA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|117612734|gb|ABK48188.1| Holliday junction DNA helicase RuvB [Shewanella sp. ANA-3]
          Length = 334

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 198/334 (59%), Positives = 255/334 (76%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+   +  Q+D     +RP+ L+E+TGQ +  + LKVFI+AAK R EALDH+L 
Sbjct: 1   MIEADRLIQPQLQGQDDVIDRAMRPKLLDEYTGQDDTRAQLKVFIQAAKNREEALDHMLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN +STSGPV+ KAGDLAALLTNLE  DVLFIDEIHRLS 
Sbjct: 61  YGPPGLGKTTLAMIVANEMGVNIKSTSGPVLEKAGDLAALLTNLEAGDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ ATTR G LT+PL+ RFGIP+R
Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGALTSPLRARFGIPLR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY ++DL TIV R A++ GLA+  E A EIA RSRGTPRIA RLLRRVRD+AEV H  
Sbjct: 181 LEFYNVKDLSTIVTRSAQVMGLAIDSEGATEIAKRSRGTPRIANRLLRRVRDYAEVKHDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            +T+++A+ AL  L +D  GFD +D + L  I   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 AVTQKVAEQALDLLDVDGEGFDYMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +EP++IQQGFIQRTPRGR+    A+ H G+  P 
Sbjct: 301 LEPFLIQQGFIQRTPRGRIATTRAYLHFGMIKPE 334


>gi|134093540|ref|YP_001098615.1| Holliday junction DNA helicase RuvB [Herminiimonas arsenicoxydans]
 gi|172044146|sp|A4G1U9|RUVB_HERAR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|133737443|emb|CAL60486.1| Holliday junction DNA helicase ruvB [Herminiimonas arsenicoxydans]
          Length = 352

 Score =  382 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 188/325 (57%), Positives = 243/325 (74%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           +   + E+A    LRP+ L+E+ GQ +    L++FI AA+ R EALDH L  GPPGLGKT
Sbjct: 17  TPASANEEAIERALRPKQLDEYVGQEKIRGQLEIFITAARQRREALDHTLLFGPPGLGKT 76

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           TLA ++ARE+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA
Sbjct: 77  TLAHIIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPA 136

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +ED+Q+D+M+GEGP+ARSV+++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY   +L
Sbjct: 137 LEDYQIDIMIGEGPAARSVRLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTPLEL 196

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             IV R + L    + ++ A EIA RSRGTPRIA RLLRRVRD+AEV     IT+ +ADA
Sbjct: 197 TRIVTRSSSLLNAPIDEDGAFEIAKRSRGTPRIANRLLRRVRDYAEVKGNGDITKAMADA 256

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL+ L +D +GFD +D + L  +   F GGPVG++ ++A + E RD IED++EPY+IQQG
Sbjct: 257 ALVMLDVDPVGFDVMDRKLLEAVLFKFNGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQG 316

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIPH 333
           F+QRTPRGR+  P+A+ H G+  P 
Sbjct: 317 FLQRTPRGRIATPVAYAHFGVTAPQ 341


>gi|113970240|ref|YP_734033.1| Holliday junction DNA helicase RuvB [Shewanella sp. MR-4]
 gi|123029677|sp|Q0HIZ1|RUVB_SHESM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|113884924|gb|ABI38976.1| Holliday junction DNA helicase RuvB [Shewanella sp. MR-4]
          Length = 334

 Score =  382 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 198/334 (59%), Positives = 255/334 (76%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+   +  Q+D     +RP+ L+E+TGQ +  + LKVFI+AAK R EALDH+L 
Sbjct: 1   MIEADRLIQPQLQGQDDVIDRAMRPKLLDEYTGQDDTRAQLKVFIQAAKNREEALDHMLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN +STSGPV+ KAGDLAALLTNLE  DVLFIDEIHRLS 
Sbjct: 61  YGPPGLGKTTLAMIVANEMGVNIKSTSGPVLEKAGDLAALLTNLEAGDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ ATTR G LT+PL+ RFGIP+R
Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGALTSPLRARFGIPLR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY ++DL TIV R A++ GLA+  E A EIA RSRGTPRIA RLLRRVRD+AEV H  
Sbjct: 181 LEFYNVKDLSTIVTRSAQVMGLAIDSEGATEIAKRSRGTPRIANRLLRRVRDYAEVKHDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            +T+++A+ AL  L +D  GFD +D + L  I   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 AVTKKVAEHALDLLDVDGEGFDYMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +EP++IQQGFIQRTPRGR+    A+ H G+  P 
Sbjct: 301 LEPFLIQQGFIQRTPRGRIATTRAYLHFGMIKPE 334


>gi|196039287|ref|ZP_03106593.1| Holliday junction DNA helicase RuvB [Bacillus cereus NVH0597-99]
 gi|228917057|ref|ZP_04080616.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|196029914|gb|EDX68515.1| Holliday junction DNA helicase RuvB [Bacillus cereus NVH0597-99]
 gi|228842585|gb|EEM87674.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
          Length = 333

 Score =  382 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 188/333 (56%), Positives = 246/333 (73%), Gaps = 2/333 (0%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD E LLS   + EDAD+   LRP+TL ++ GQ +A  NL+VFIEAAK R E LDHVL  
Sbjct: 1   MD-ERLLSGESAYEDADLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLLY 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT+L+  DVLFIDEIHRL   
Sbjct: 60  GPPGLGKTTLANIIANEMGVNVRTTSGPAIERPGDLAAVLTSLQPGDVLFIDEIHRLHRS 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EE+LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTR G L+ PL+DRFG+  RL
Sbjct: 120 IEEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y ++ L  IV+R  ++  + +   AA EIA R+RGTPRIA RLLRRVRDFA+V    T
Sbjct: 180 EYYTVDQLSAIVERTGEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRGNGT 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +T EI   AL  L +DK+G D +D + L  I   F GGPVG+ET+SA + E    IED+ 
Sbjct: 240 VTMEITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSATIGEESHTIEDVY 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY++Q GF+QRTPRGR++ P+A++H G+++P 
Sbjct: 300 EPYLLQIGFLQRTPRGRIVTPLAYEHFGMEMPK 332


>gi|228987673|ref|ZP_04147785.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228772058|gb|EEM20512.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 333

 Score =  382 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 189/333 (56%), Positives = 246/333 (73%), Gaps = 2/333 (0%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD E LLS   + EDAD+   LRP+TL ++ GQ +A  NL+VFIEAAK R E LDHVL  
Sbjct: 1   MD-ERLLSGESAYEDADLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLLY 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT L+  DVLFIDEIHRL   
Sbjct: 60  GPPGLGKTTLANIIANEMGVNVRTTSGPAIERPGDLAAVLTALQPGDVLFIDEIHRLHRS 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EE+LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTR G L+ PL+DRFG+  RL
Sbjct: 120 IEEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y ++ L  IV+R A++  + +   AA EIA R+RGTPRIA RLLRRVRDFA+V    T
Sbjct: 180 EYYTVDQLSEIVERTAEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRGNGT 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +T EI   AL  L +DK+G D +D + L  I   F GGPVG+ET+SA + E    IED+ 
Sbjct: 240 VTMEITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSATIGEESHTIEDVY 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY++Q GF+QRTPRGR++ P+A++H G+++P 
Sbjct: 300 EPYLLQIGFLQRTPRGRIVTPLAYKHFGMEMPK 332


>gi|118479575|ref|YP_896726.1| Holliday junction DNA helicase RuvB [Bacillus thuringiensis str. Al
           Hakam]
 gi|166231463|sp|A0RJ26|RUVB_BACAH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|118418800|gb|ABK87219.1| Holliday junction DNA helicase subunit RuvB [Bacillus thuringiensis
           str. Al Hakam]
          Length = 336

 Score =  382 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 188/334 (56%), Positives = 247/334 (73%), Gaps = 2/334 (0%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           +MD E LLS   + EDAD+   LRP+TL ++ GQ +A  NL+VFIEAAK R E LDHVL 
Sbjct: 3   IMD-ERLLSGESAYEDADLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLL 61

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT+L+  DVLFIDEIHRL  
Sbjct: 62  YGPPGLGKTTLANIIANEMGVNVRTTSGPAIERPGDLAAVLTSLQPGDVLFIDEIHRLHR 121

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            +EE+LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTR G L+ PL+DRFG+  R
Sbjct: 122 SIEEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSR 181

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y ++ L  IV+R  ++  + +   AA EIA R+RGTPRIA RLLRRVRDFA+V    
Sbjct: 182 LEYYTVDQLSAIVERTGEVFEVEINSLAALEIARRARGTPRIANRLLRRVRDFAQVRGNG 241

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           T+T EI   AL  L +DK+G D +D + L  I   F GGPVG+ET+SA + E    IED+
Sbjct: 242 TVTMEITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSATIGEESHTIEDV 301

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            EPY++Q GF+QRTPRGR++ P+A++H G+++P 
Sbjct: 302 YEPYLLQIGFLQRTPRGRIVTPLAYEHFGMEMPK 335


>gi|238919503|ref|YP_002933018.1| holliday junction DNA helicase RuvB, [Edwardsiella ictaluri 93-146]
 gi|259495665|sp|C5B9T2|RUVB_EDWI9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|238869072|gb|ACR68783.1| holliday junction DNA helicase RuvB, putative [Edwardsiella
           ictaluri 93-146]
          Length = 334

 Score =  382 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 195/331 (58%), Positives = 251/331 (75%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L++ +  S+E+     +RP+TL ++ GQ +    +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRLIAADAQSEEEFLDRAIRPKTLADYVGQPQVRGQMEIFIKAAKLRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTL+ ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLVGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IV R A   GLA+TDE A E+A RSRGTPRIA RLLRRVRDFAEV    
Sbjct: 181 LEFYQVADLQHIVGRSAHCLGLALTDEGALEVARRSRGTPRIANRLLRRVRDFAEVCADG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  E+A  AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 RIDGEVAAQALNMLDVDAAGFDYMDRKLLLAVIDKFMGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           +EPY+IQQGFIQRTPRGR+    A+QH GID
Sbjct: 301 LEPYLIQQGFIQRTPRGRIATVHAYQHFGID 331


>gi|149910564|ref|ZP_01899203.1| Holliday junction DNA helicase RuvB [Moritella sp. PE36]
 gi|149806407|gb|EDM66380.1| Holliday junction DNA helicase RuvB [Moritella sp. PE36]
          Length = 335

 Score =  382 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 193/335 (57%), Positives = 248/335 (74%), Gaps = 1/335 (0%)

Query: 1   MMDREGLLSR-NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S   V +E+     +RP+ L ++ GQ    S +++FIEA+K R +ALDH+L 
Sbjct: 1   MIEADRLISSGTVREEEVIDRAIRPKMLSDYQGQDHVRSQMEIFIEASKRRDDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GV+ ++TSGPV+ KAGDLAALLTNLE  DVLFIDEIHRL+ 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVSIKTTSGPVLEKAGDLAALLTNLEPNDVLFIDEIHRLNP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            +EEILYPAMED+QLD+M+GEGPSARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 SIEEILYPAMEDYQLDIMIGEGPSARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++EDL+ IV R A   GL +    A EIA R+RGTPRIA RLLRRVRD+AEV H  
Sbjct: 181 LEFYKVEDLQDIVLRSATCLGLNMDRAGALEIARRARGTPRIANRLLRRVRDYAEVKHDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  EI+ AAL  L +D  GFD +D + L  I   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 DIDAEISSAALSMLDVDTCGFDYMDRKLLIAIIDTFSGGPVGLDNVAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           +EPY+IQQGF+QRTPRGR+    A+ HLG D P +
Sbjct: 301 LEPYLIQQGFLQRTPRGRIATARAYLHLGFDYPEK 335


>gi|301055928|ref|YP_003794139.1| holliday junction DNA helicase RuvB [Bacillus anthracis CI]
 gi|300378097|gb|ADK07001.1| holliday junction DNA helicase RuvB [Bacillus cereus biovar
           anthracis str. CI]
          Length = 333

 Score =  382 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 189/333 (56%), Positives = 246/333 (73%), Gaps = 2/333 (0%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD E LLS   + EDAD+   LRP+TL ++ GQ +A  NL+VFIEAAK R E LDHVL  
Sbjct: 1   MD-ERLLSGESAYEDADLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLLY 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT+L+  DVLFIDEIHRL   
Sbjct: 60  GPPGLGKTTLANIIANEMGVNVRTTSGPAIERPGDLAAVLTSLQPGDVLFIDEIHRLHRS 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EE+LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTR G L+ PL+DRFG+  RL
Sbjct: 120 IEEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y ++ L  IV+R  ++  + +   AA EIA R+RGTPRIA RLLRRVRDFA+V    T
Sbjct: 180 EYYTVDQLSAIVERTGEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRGNGT 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +T EI   AL  L +DK+G D +D + L  I   F GGPVG+ET+SA + E    IED+ 
Sbjct: 240 VTMEITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSATIGEESHTIEDVY 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY++Q GF+QRTPRGR++ P+A++H G++IP 
Sbjct: 300 EPYLLQIGFLQRTPRGRIVTPLAYEHFGMEIPK 332


>gi|269138791|ref|YP_003295492.1| holliday junction resolvasome, helicase subunit [Edwardsiella tarda
           EIB202]
 gi|267984452|gb|ACY84281.1| holliday junction resolvasome, helicase subunit [Edwardsiella tarda
           EIB202]
 gi|304558783|gb|ADM41447.1| Holliday junction DNA helicase RuvB [Edwardsiella tarda FL6-60]
          Length = 334

 Score =  382 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 192/331 (58%), Positives = 250/331 (75%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L++    S+E+     +RP+TL ++ GQ +    +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRLIAAGAQSEEEFLDRAIRPKTLADYVGQPQVRGQMEIFIKAAKLRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTL+ ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLVGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IV R A+  GL +T+E A E+A RSRGTPRIA RLLRRVRDFAEV    
Sbjct: 181 LEFYQVADLQHIVGRSAQCLGLTLTEEGALEVARRSRGTPRIANRLLRRVRDFAEVCADG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  ++A  AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 HIDGKVAAQALNMLDVDAAGFDYMDRKLLLAVIDKFMGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           +EPY+IQQGFIQRTPRGR+    A+QH GID
Sbjct: 301 LEPYLIQQGFIQRTPRGRIATAHAYQHFGID 331


>gi|312110087|ref|YP_003988403.1| Holliday junction DNA helicase RuvB [Geobacillus sp. Y4.1MC1]
 gi|311215188|gb|ADP73792.1| Holliday junction DNA helicase RuvB [Geobacillus sp. Y4.1MC1]
          Length = 334

 Score =  382 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 184/331 (55%), Positives = 242/331 (73%), Gaps = 1/331 (0%)

Query: 4   REGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
            E L+S +V +ED  +   LRP+ L E+ GQ +   NLKVFIEAAK R E LDHVL  GP
Sbjct: 2   EERLVSGDVHREDISLEYSLRPKFLHEYIGQDKVKDNLKVFIEAAKMREETLDHVLLYGP 61

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++A E+GV+ R+TSGP I + GDLAA+LT+LE  DVLFIDEIHRL   VE
Sbjct: 62  PGLGKTTLAGIIANEMGVHLRTTSGPAIERPGDLAAILTSLEPGDVLFIDEIHRLHRSVE 121

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMED+ LD+++G+G +ARS++I+L  FTL+ ATTR G L+ PL+DRFG+  RL +
Sbjct: 122 EVLYPAMEDYCLDIVIGKGQTARSIRIDLPPFTLVGATTRAGALSAPLRDRFGVISRLEY 181

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y+ E L  IV R A++  + +  EAA EIA RSRGTPRIA RLLRRVRDFA+V    TIT
Sbjct: 182 YQPEHLTQIVMRTAEILHVDIKAEAALEIARRSRGTPRIANRLLRRVRDFAQVRGDGTIT 241

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             +A  AL  L +D++G D +D + +  I   F GGPVGI+TI+A + E    IED+ EP
Sbjct: 242 FSLAKEALELLQVDRLGLDHIDHKLIEAIIEKFNGGPVGIDTIAATIGEEAQTIEDVYEP 301

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           Y++Q GF+QRTPRGR++ P A++H+G+++P 
Sbjct: 302 YLLQIGFLQRTPRGRMVTPAAYKHVGMEVPK 332


>gi|114047571|ref|YP_738121.1| Holliday junction DNA helicase RuvB [Shewanella sp. MR-7]
 gi|123326534|sp|Q0HUZ1|RUVB_SHESR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|113889013|gb|ABI43064.1| Holliday junction DNA helicase RuvB [Shewanella sp. MR-7]
          Length = 334

 Score =  382 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 198/334 (59%), Positives = 255/334 (76%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+   +  Q+D     +RP+ L+E+TGQ +  + LKVFI+AAK R EALDH+L 
Sbjct: 1   MIEADRLIQPQLQGQDDVIDRAMRPKLLDEYTGQDDTRAQLKVFIQAAKNREEALDHMLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN +STSGPV+ KAGDLAALLTNLE  DVLFIDEIHRLS 
Sbjct: 61  YGPPGLGKTTLAMIVANEMGVNIKSTSGPVLEKAGDLAALLTNLEAGDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ ATTR G LT+PL+ RFGIP+R
Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGALTSPLRARFGIPLR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY ++DL TIV R A++ GLA+  E A EIA RSRGTPRIA RLLRRVRD+AEV H  
Sbjct: 181 LEFYNVKDLSTIVSRSAQVMGLAIDSEGAIEIAKRSRGTPRIANRLLRRVRDYAEVKHDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            +T+++A+ AL  L +D  GFD +D + L  I   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 AVTKKVAEHALDLLDVDGEGFDYMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +EP++IQQGFIQRTPRGR+    A+ H G+  P 
Sbjct: 301 LEPFLIQQGFIQRTPRGRIATNRAYLHFGMIKPE 334


>gi|325579042|ref|ZP_08148998.1| crossover junction ATP-dependent DNA helicase RuvB [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325159277|gb|EGC71411.1| crossover junction ATP-dependent DNA helicase RuvB [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 335

 Score =  382 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 190/333 (57%), Positives = 247/333 (74%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + ++S  V   ED     +RP+ L ++ GQ +    + +FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRIISSQVKMDEDVIDRAIRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            +EE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 AIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY +EDL +IV R A    L + D+AA E+A RSRGTPRIA RLLRRVRDFA+V +  
Sbjct: 181 LEFYSVEDLTSIVTRSASCLNLELEDKAAFEVARRSRGTPRIANRLLRRVRDFADVRNDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I+ +IA  AL  L +D  GFD LD + LT +   F GGPVG++ ++A + E RD IED+
Sbjct: 241 IISADIAKQALSMLDVDDAGFDYLDRKLLTAVIERFDGGPVGLDNLAAAIGEERDTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           +EPY+IQQGF+QRTPRGR+   + ++H G+  P
Sbjct: 301 LEPYLIQQGFLQRTPRGRIATSLTYRHFGLQKP 333


>gi|227329528|ref|ZP_03833552.1| Holliday junction DNA helicase RuvB [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 336

 Score =  382 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 190/331 (57%), Positives = 251/331 (75%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSRN-VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S + V +E+     +RP+ L E+ GQ +    +++FI+AA+ R +ALDH+L 
Sbjct: 1   MIEADRLISADAVPEEEFIDRAIRPKLLTEYVGQPQVREQMEIFIQAARKRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAALLTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNMRTTSGPVLEKAGDLAALLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++EDL+ IV R A+  GL +T + A E+A R+RGTPRIA RLLRRVRDF+EV    
Sbjct: 181 LEFYKVEDLQYIVSRSAQCLGLDLTSDGALEVARRARGTPRIANRLLRRVRDFSEVKSEG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT ++A  AL  LA+D  GFD +D + L  I   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 AITGDVATQALDMLAVDTEGFDYMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           +EP++IQQGFIQRTPRGR+    A++H G+ 
Sbjct: 301 LEPFLIQQGFIQRTPRGRMATQHAYRHFGLT 331


>gi|300723092|ref|YP_003712390.1| Holliday junction helicase subunit B [Xenorhabdus nematophila ATCC
           19061]
 gi|297629607|emb|CBJ90210.1| Holliday junction helicase, subunit B [Xenorhabdus nematophila ATCC
           19061]
          Length = 335

 Score =  382 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 192/331 (58%), Positives = 249/331 (75%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S  + Q+D A    +RP+ L E+ GQ   C  +++FI+AA+ R +ALDH+L 
Sbjct: 1   MIEADRLVSAEILQDDEAIDRAIRPKFLSEYVGQPHVCEQMEIFIQAARQRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPAMED+QLD+M+GEGP+ARS+KI+L  FTL+ ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLVGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY + DL++IV R A   GL ++D+ A +IAMRSRGTPRI  RLLRRVRDFAEV    
Sbjct: 181 LEFYNVNDLQSIVSRSAHYMGLNISDDGARQIAMRSRGTPRITNRLLRRVRDFAEVKGDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           ++  +IA  AL  L +D  GFD LD + L  I   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 SVNSDIAAQALNMLNVDSAGFDYLDRKLLVAIIDKFMGGPVGVDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           +EP++IQQGFIQRTPRGR+    A++H G+ 
Sbjct: 301 LEPFLIQQGFIQRTPRGRIATNHAYRHFGLS 331


>gi|300692491|ref|YP_003753486.1| ATP-dependent DNA helicase, subunit B of RuvABC Holliday junction
           resolvasome [Ralstonia solanacearum PSI07]
 gi|299079551|emb|CBJ52229.1| ATP-dependent DNA helicase, subunit B of RuvABC Holliday junction
           resolvasome [Ralstonia solanacearum PSI07]
          Length = 357

 Score =  381 bits (979), Expect = e-104,   Method: Composition-based stats.
 Identities = 196/331 (59%), Positives = 243/331 (73%), Gaps = 2/331 (0%)

Query: 5   EGLLS--RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           E L+S       E+A    LRP+ L+E+ GQ +    L +F+ AAK R EALDHVL  GP
Sbjct: 15  ERLISASPASPNEEAFERALRPKLLDEYVGQEKVRGQLDIFMTAAKKRREALDHVLLFGP 74

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++ARE+GVN R TSGPV+ + GDLAALLTNLE  DVLFIDEIHRLS +VE
Sbjct: 75  PGLGKTTLAHIIAREMGVNLRQTSGPVLERPGDLAALLTNLEANDVLFIDEIHRLSPVVE 134

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILYPA+ED+Q+D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL F
Sbjct: 135 EILYPALEDYQIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEF 194

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y   +L  IV+R A L    + D+ A EIA RSRGTPRIA RLLRRVRD+AEV     IT
Sbjct: 195 YTPTELARIVKRSAGLLDAQIVDDGALEIAKRSRGTPRIANRLLRRVRDYAEVKADGIIT 254

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           R +ADAAL  L +D +GFD +D + L  I   F GGPVGI+ ++A + E RD IED++EP
Sbjct: 255 RAVADAALAMLDVDAVGFDLMDRKLLEAILHKFNGGPVGIDNLAAAIGEERDTIEDVLEP 314

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           Y+IQQG++QRTPRGR+    A+QH G+  P 
Sbjct: 315 YLIQQGYLQRTPRGRVATASAYQHFGLGAPK 345


>gi|304317015|ref|YP_003852160.1| Holliday junction DNA helicase RuvB [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778517|gb|ADL69076.1| Holliday junction DNA helicase RuvB [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 331

 Score =  381 bits (979), Expect = e-104,   Method: Composition-based stats.
 Identities = 180/330 (54%), Positives = 240/330 (72%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
            + +L++N + EDA    LRP+ L E+ GQ +    LK++IEAAK R E LDHVL  GPP
Sbjct: 2   EDRILTQNFTPEDASEYSLRPKRLSEYIGQTKIKEELKIYIEAAKMRNEPLDHVLLFGPP 61

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA +++ E+GV  R TSGP I +AGDLAA+LTNL++ D+LFIDEIHRL+  VEE
Sbjct: 62  GLGKTTLANIISNEMGVGIRITSGPAIERAGDLAAILTNLQENDILFIDEIHRLNRSVEE 121

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILYPAMEDF+LD+++G+GPSARS+++NL  FTLI ATTR GL+T+PL+DRFG+ +RL FY
Sbjct: 122 ILYPAMEDFELDIIIGKGPSARSLRLNLPHFTLIGATTRAGLMTSPLRDRFGVIMRLEFY 181

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            + DL  I++R + +  + + DEAA E+  RSRGTPRIA RLL+RVRDFA+V     I  
Sbjct: 182 SVNDLSEIIKRSSAILNIGINDEAAYELGRRSRGTPRIANRLLKRVRDFAQVKGNGFIDF 241

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           E A  AL  L +D MG + +D + L  I   F GGPVGI+TI+A + E  + IED+ EPY
Sbjct: 242 ETAKDALDMLGVDDMGLEHIDRKMLKSIIEKFSGGPVGIDTIAASIGEESETIEDVYEPY 301

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           ++Q GF+ RTPRGR+   +A+++L   IP 
Sbjct: 302 LMQIGFLNRTPRGRIATKLAYEYLNYSIPE 331


>gi|30248237|ref|NP_840307.1| Holliday junction DNA helicase B [Nitrosomonas europaea ATCC 19718]
 gi|44888451|sp|Q82XP4|RUVB_NITEU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|30180122|emb|CAD84124.1| ruvB; holliday junction DNA helicase protein [Nitrosomonas europaea
           ATCC 19718]
          Length = 346

 Score =  381 bits (979), Expect = e-104,   Method: Composition-based stats.
 Identities = 199/336 (59%), Positives = 250/336 (74%), Gaps = 2/336 (0%)

Query: 1   MMDREGLLSRNV--SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M++ + +++ +   SQE+     LRP  L+++ GQ +    LK+FIEAA+ R EALDHVL
Sbjct: 1   MIESDRIITASPFSSQEEVIERALRPVQLDDYVGQEKIREQLKIFIEAARLRQEALDHVL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA ++ARE+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS
Sbjct: 61  LFGPPGLGKTTLAHIIAREMGVNLRQTSGPVLERAGDLAALLTNLETNDVLFIDEIHRLS 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            +VEEILYPAMED+QLD+M+GEG +ARSVKI+L  FTL+ ATTR G+LTNPL+DRFGI  
Sbjct: 121 PVVEEILYPAMEDYQLDIMIGEGAAARSVKIDLPSFTLVGATTRAGMLTNPLRDRFGIVS 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           RL FY  ++L  IV R A L  + VT + A EIA RSRGTPRIA RLLRRVRDFAEV   
Sbjct: 181 RLEFYTADELGKIVTRSAGLLNVDVTADGAREIACRSRGTPRIANRLLRRVRDFAEVRAN 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             I R +ADAAL  L +D  G D LD + L  +   FGGGPVG++ ++A ++E RD IE+
Sbjct: 241 GRIDRPVADAALQMLDVDATGLDVLDRKLLLAVLEKFGGGPVGVDNLAAAINEERDTIEE 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           ++EPY+IQQGF+QRTPRGR+   +A+QH  I   H+
Sbjct: 301 VLEPYLIQQGFLQRTPRGRMATTMAYQHFDIIPSHQ 336


>gi|295695627|ref|YP_003588865.1| Holliday junction DNA helicase RuvB [Bacillus tusciae DSM 2912]
 gi|295411229|gb|ADG05721.1| Holliday junction DNA helicase RuvB [Bacillus tusciae DSM 2912]
          Length = 340

 Score =  381 bits (979), Expect = e-104,   Method: Composition-based stats.
 Identities = 191/325 (58%), Positives = 240/325 (73%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           +E ++S + + ED  +  LRPR L E+ GQ +   NL+VFI AAK R EALDHVL  GPP
Sbjct: 2   QERMVSAHYTGEDGQLESLRPRNLNEYIGQDQVKENLRVFITAAKMRREALDHVLLYGPP 61

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++A ELGV   +TSGP I + GDLAA+LTNL + DVLFIDEIHRLS +VEE
Sbjct: 62  GLGKTTLAGIIAHELGVQMHTTSGPAIERPGDLAAILTNLSEGDVLFIDEIHRLSRVVEE 121

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILYPAMED+ LD ++G+GPSARS++++L  FTLI ATTR GLL++PL+DRFG+   L +Y
Sbjct: 122 ILYPAMEDYALDFIIGKGPSARSIRLDLPPFTLIGATTRAGLLSSPLRDRFGVVGHLEYY 181

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
             EDL  IV+R A++  + +  E A EIA RSRGTPR+AGRLL+RVRDFA+V     I R
Sbjct: 182 SQEDLCRIVRRAAQILQVPLEPEGAEEIARRSRGTPRVAGRLLKRVRDFAQVDGHGKIDR 241

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           E+A AAL R+ +D  G D LD R L  +  +FGGGPVG+ET+SA L E  D IED+ EPY
Sbjct: 242 EVAAAALERIQVDSAGLDALDHRLLLTMIDHFGGGPVGLETLSATLGEEPDTIEDVYEPY 301

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLG 328
           ++Q GFIQRTPRGR++   A  HLG
Sbjct: 302 LLQIGFIQRTPRGRVVTERACAHLG 326


>gi|295399353|ref|ZP_06809335.1| Holliday junction DNA helicase RuvB [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294978819|gb|EFG54415.1| Holliday junction DNA helicase RuvB [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 334

 Score =  381 bits (979), Expect = e-104,   Method: Composition-based stats.
 Identities = 184/331 (55%), Positives = 242/331 (73%), Gaps = 1/331 (0%)

Query: 4   REGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
            E L+S +V +ED  +   LRP+ L E+ GQ +   NLKVFIEAAK R E LDHVL  GP
Sbjct: 2   EERLVSGDVHREDISLEYSLRPKFLHEYIGQDKVKDNLKVFIEAAKMREETLDHVLLYGP 61

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++A E+GV+ R+TSGP I + GDLAA+LT+LE  DVLFIDEIHRL   VE
Sbjct: 62  PGLGKTTLAGIIANEMGVHLRTTSGPAIERPGDLAAILTSLEPGDVLFIDEIHRLHRSVE 121

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMED+ LD+++G+G +ARS++I+L  FTL+ ATTR G L+ PL+DRFG+  RL +
Sbjct: 122 EVLYPAMEDYCLDIVIGKGQTARSIRIDLPPFTLVGATTRAGALSAPLRDRFGVISRLEY 181

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y+ E L  IV R A++  + +  EAA EIA RSRGTPRIA RLLRRVRDFA+V    TIT
Sbjct: 182 YQPEHLTQIVMRTAEILHVDIKAEAALEIARRSRGTPRIANRLLRRVRDFAQVRGDGTIT 241

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             +A  AL  L +D++G D +D + +  I   F GGPVGI+TI+A + E    IED+ EP
Sbjct: 242 FSLAKEALELLQVDRLGLDHIDHKLIEAIIEKFNGGPVGIDTIAATIGEEAQTIEDVYEP 301

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           Y++Q GF+QRTPRGR++ P A++H+G+++P 
Sbjct: 302 YLLQIGFLQRTPRGRIVTPAAYKHVGMEVPK 332


>gi|254482449|ref|ZP_05095688.1| Holliday junction DNA helicase RuvB [marine gamma proteobacterium
           HTCC2148]
 gi|214037140|gb|EEB77808.1| Holliday junction DNA helicase RuvB [marine gamma proteobacterium
           HTCC2148]
          Length = 351

 Score =  381 bits (979), Expect = e-104,   Method: Composition-based stats.
 Identities = 185/334 (55%), Positives = 247/334 (73%), Gaps = 2/334 (0%)

Query: 1   MMDREGLLSRNV--SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M++ + L++ +    +EDA    +RP++L E+ GQ   C  + +F++AAK R E LDH L
Sbjct: 1   MIETDRLIAPDPVSPREDALDRAIRPKSLAEYVGQKVVCDQMSIFLQAAKGRDEPLDHTL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA ++A E+GV+ ++TSGPV+ KAGD+AAL+TNLE  DVLFIDEIHRLS
Sbjct: 61  IFGPPGLGKTTLASIIANEMGVSLKTTSGPVLEKAGDIAALMTNLEPGDVLFIDEIHRLS 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
             VEE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ ATTR GLLT+PL+DRFGI  
Sbjct: 121 PFVEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGLLTSPLRDRFGIVQ 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           RL FYE+ DL  IV+R A +  + +  + A EIA RSRGTPRIA RLLRRVRD+AEV   
Sbjct: 181 RLEFYEVADLAHIVERSANILEIGIDTKGATEIARRSRGTPRIANRLLRRVRDYAEVKAD 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             IT  +AD AL  L++D+ GFD  D R +  +   F GGPVG+++++A +SE R  IED
Sbjct: 241 GYITDAVADRALDMLSVDQHGFDHQDRRLMLTMIEKFDGGPVGVDSLAAAISEERGTIED 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++EPY+IQQGF+ RTPRGR++   A+ H G+  P
Sbjct: 301 VLEPYLIQQGFMVRTPRGRMVTRNAYLHFGLPQP 334


>gi|53804470|ref|YP_113687.1| Holliday junction DNA helicase RuvB [Methylococcus capsulatus str.
           Bath]
 gi|68715360|sp|Q609L0|RUVB_METCA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|53758231|gb|AAU92522.1| Holliday junction DNA helicase RuvB [Methylococcus capsulatus str.
           Bath]
          Length = 345

 Score =  381 bits (979), Expect = e-104,   Method: Composition-based stats.
 Identities = 194/334 (58%), Positives = 241/334 (72%), Gaps = 1/334 (0%)

Query: 2   MDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M  + L+S      E+A    +RP+ LE++ GQ      + +FI+AA  R EALDHVL  
Sbjct: 1   MTTQRLVSAAGQWDEEAIDRAIRPKRLEDYVGQRAMREQMAIFIQAALGRGEALDHVLIF 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A ELGVN R TSGPV+ KAGDLAALLTNLE RDVLFIDEIHRL  +
Sbjct: 61  GPPGLGKTTLANIIANELGVNVRHTSGPVLEKAGDLAALLTNLEPRDVLFIDEIHRLGAV 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMED+Q+D+M+GEGP+ARS+K++L  FTL+ ATTR GLLT+PL+DRFGI  RL
Sbjct: 121 VEEVLYPAMEDYQIDIMIGEGPAARSIKLDLPPFTLVGATTRAGLLTSPLRDRFGIVHRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY +E+L  IV R A++ G  +T E A E+A RSRGTPRIA RLLRRVRDFA+V     
Sbjct: 181 EFYSVEELSRIVARSARILGSEITPEGAAEVARRSRGTPRIANRLLRRVRDFAQVMADGR 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           IT E+A  AL  L +D  GFDQ D R L  +   F GGPVG++ ++A + E R  IED++
Sbjct: 241 ITGEVAGKALEMLDVDPNGFDQSDRRLLLTMMEKFEGGPVGLDNLAAAIGEERGTIEDVL 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           EPY+IQQGFI RTPRGR+    A+ H G+  P R
Sbjct: 301 EPYLIQQGFIMRTPRGRVATRNAYLHFGLKPPQR 334


>gi|307944540|ref|ZP_07659880.1| holliday junction DNA helicase RuvB [Roseibium sp. TrichSKD4]
 gi|307772289|gb|EFO31510.1| holliday junction DNA helicase RuvB [Roseibium sp. TrichSKD4]
          Length = 346

 Score =  381 bits (979), Expect = e-104,   Method: Composition-based stats.
 Identities = 226/334 (67%), Positives = 280/334 (83%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D + L++  +  ++ D S +RP+ L+ F GQ +A +NLK+FIEAAKAR EALDHVLFV
Sbjct: 1   MSDDQRLVTPEIRGDEID-STMRPQALDNFVGQAQARANLKIFIEAAKARGEALDHVLFV 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++ARELGVNFR+TSGPVIAK+GDLAALLTNLE+RDVLFIDEIHRL+  
Sbjct: 60  GPPGLGKTTLAQIMARELGVNFRATSGPVIAKSGDLAALLTNLEERDVLFIDEIHRLNPA 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMED+QLDL++GEGP+ARSVKI+L++FTL+AATTR+GLLT PL+DRFGIP+RL
Sbjct: 120 VEEVLYPAMEDYQLDLIIGEGPAARSVKIDLAKFTLVAATTRLGLLTTPLRDRFGIPVRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY   +L+ IV+RGA++ G+ + D+ A EIA RSRGTPRIAGRLLRRVRDFA V    +
Sbjct: 180 EFYTQPELEHIVKRGARIVGVGMADDGATEIAKRSRGTPRIAGRLLRRVRDFAIVEGVDS 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           + R +AD AL +L +D  G D LD RYL  IARNFGGGPVGIETI+A LSEPRDAIE+++
Sbjct: 240 VDRALADKALSQLEVDAAGLDSLDRRYLNQIARNFGGGPVGIETIAAALSEPRDAIEEIV 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           EPY+IQ GF+QRTPRGR+L  +A+ HLG+ +P R
Sbjct: 300 EPYLIQNGFLQRTPRGRVLTNVAFSHLGLAVPDR 333


>gi|167037427|ref|YP_001665005.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|167040094|ref|YP_001663079.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter sp. X514]
 gi|256752589|ref|ZP_05493443.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|300914177|ref|ZP_07131493.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter sp. X561]
 gi|307724587|ref|YP_003904338.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter sp. X513]
 gi|320115840|ref|YP_004185999.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|238687547|sp|B0K0L8|RUVB_THEPX RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|238687653|sp|B0K956|RUVB_THEP3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|166854334|gb|ABY92743.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter sp. X514]
 gi|166856261|gb|ABY94669.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|256748527|gb|EEU61577.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|300889112|gb|EFK84258.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter sp. X561]
 gi|307581648|gb|ADN55047.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter sp. X513]
 gi|319928931|gb|ADV79616.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 338

 Score =  381 bits (979), Expect = e-104,   Method: Composition-based stats.
 Identities = 179/331 (54%), Positives = 244/331 (73%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
            E +L++N +QEDA    LRPR L E+ GQ +    LK++IEAAK R E LDHVL  GPP
Sbjct: 2   EERILTQNFTQEDASEYSLRPRWLSEYIGQQKIKEELKIYIEAAKMRKEPLDHVLLYGPP 61

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA V++ E+GV  + TSGP I K+GDLAA+LTNL++ D+LFIDEIHRL+  VEE
Sbjct: 62  GLGKTTLATVISNEMGVGIKITSGPAIEKSGDLAAILTNLQENDILFIDEIHRLNRSVEE 121

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILYPAMEDF+LD+++G+GPSARS++++L RFTLI ATTR  L+T+PL+DRFG+  RL++Y
Sbjct: 122 ILYPAMEDFELDIVIGKGPSARSIRLSLPRFTLIGATTRAALMTSPLRDRFGVINRLDYY 181

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            +E+LK I++R A +  + + ++AA EIA RSRGTPRIA RLL+RVRDFA+V     I  
Sbjct: 182 SVEELKEIIKRSANILNIGIDEKAALEIAKRSRGTPRIANRLLKRVRDFAQVRGNGYIDF 241

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           + +  AL  L +D++G + +D + L  I   FGGGPVGI+ I+A + E  D IED+ EPY
Sbjct: 242 KTSKEALDVLGVDEIGLEYIDRKILVSIIEKFGGGPVGIDAIAASIGEDGDTIEDVYEPY 301

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           ++Q GF+ RTPRGR++  +A+ +L      +
Sbjct: 302 LLQIGFLNRTPRGRVVTKLAYDYLKYPYIEQ 332


>gi|291550304|emb|CBL26566.1| Holliday junction DNA helicase, RuvB subunit [Ruminococcus torques
           L2-14]
          Length = 332

 Score =  381 bits (979), Expect = e-104,   Method: Composition-based stats.
 Identities = 177/329 (53%), Positives = 242/329 (73%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M +  + + N+ ++      LRP+ L E+ GQ +A   L ++IEAAKAR EALDHVLF G
Sbjct: 1   MAKRIITTENLEEDSKIEGQLRPQLLSEYIGQEKAKKTLSIYIEAAKARGEALDHVLFYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+GVN + TSGP I K G++AA+L  L++ DVLF+DEIHRL+  V
Sbjct: 61  PPGLGKTTLAGIIANEMGVNMKITSGPAIEKPGEMAAILNGLQEHDVLFVDEIHRLNRQV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMED+ +D+M+G+GP ARSV++NL +FTL+ ATTR G+LT PL+DRFG+   L 
Sbjct: 121 EEVLYPAMEDYAIDIMIGKGPGARSVRLNLPKFTLVGATTRAGMLTAPLRDRFGVVHHLE 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
            Y  E+LKTI+ R A + G+ + +E A E+A RSRGTPR+A RLL+RVRDFA+V +   I
Sbjct: 181 LYNEEELKTIILRSAHVLGVEIEEEGAMELARRSRGTPRLANRLLKRVRDFAQVKYDGVI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T+E+A+ AL  L +DK G D +D   L  +   F GGPVG+ET++A +SE    +ED+ E
Sbjct: 241 TKEVANYALDLLDVDKFGLDHIDRNILITMIEKFQGGPVGLETLAASISEDAGTLEDVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           PY+++ GFIQRTPRGR++  +A+QHLGI 
Sbjct: 301 PYLLKNGFIQRTPRGRVVTELAYQHLGIP 329


>gi|251789855|ref|YP_003004576.1| Holliday junction DNA helicase RuvB [Dickeya zeae Ech1591]
 gi|247538476|gb|ACT07097.1| Holliday junction DNA helicase RuvB [Dickeya zeae Ech1591]
          Length = 336

 Score =  381 bits (979), Expect = e-104,   Method: Composition-based stats.
 Identities = 192/331 (58%), Positives = 249/331 (75%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S  V S E+     +RP+ L E+ GQ      +++FIEAA+ R +ALDH+L 
Sbjct: 1   MIEADRLISPGVVSDEEVLDRAIRPKLLSEYVGQPVVREQMEIFIEAARKRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAALLTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAALLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IVQR A+  GL +T + A E+A RSRGTPRIA RLLRRVRDF+EV    
Sbjct: 181 LEFYQVADLQHIVQRSAQCLGLEMTVDGALEVARRSRGTPRIANRLLRRVRDFSEVKSDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I+ E+A  AL  LA+D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 AISAEVAIQALDMLAVDSEGFDYMDRKLLLAVIDKFMGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           +EPY+IQQGF+QRTPRGR+    A++H G+ 
Sbjct: 301 LEPYLIQQGFLQRTPRGRIATQHAYRHFGLT 331


>gi|332967834|gb|EGK06933.1| crossover junction ATP-dependent DNA helicase RuvB [Kingella kingae
           ATCC 23330]
          Length = 344

 Score =  381 bits (979), Expect = e-104,   Method: Composition-based stats.
 Identities = 201/328 (61%), Positives = 246/328 (75%), Gaps = 2/328 (0%)

Query: 6   GLLSRN--VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
            ++S     SQE+     LRP+ L ++ GQ +A   L +FIEAAK R EALDH L  GPP
Sbjct: 14  RMVSAQKMSSQEEQLERALRPKLLSDYIGQRKAKEQLGIFIEAAKKRGEALDHTLLFGPP 73

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA +VARELGVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VEE
Sbjct: 74  GLGKTTLANIVARELGVNLRQTSGPVLERAGDLAALLTNLEPHDVLFIDEIHRLSPVVEE 133

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILYPAMED+QLD+M+GEGP+ARSVKI+L  FTLI ATTR G+LTNPL+DRFGI  RL FY
Sbjct: 134 ILYPAMEDYQLDIMIGEGPAARSVKIDLPPFTLIGATTRAGMLTNPLRDRFGIVARLEFY 193

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           E  DL TIV+R A+L  + +  + A E+A RSRGTPRIA RLLRRVRD+AEV HA  I  
Sbjct: 194 ETADLATIVRRSAQLLNMTLDKQGAWEVARRSRGTPRIANRLLRRVRDYAEVKHAGKIDA 253

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
            +ADAAL  L +DK+G D +D ++L  +   F GGPVG++ ++A + E  D IED+IEPY
Sbjct: 254 NVADAALSMLDVDKIGLDMMDRKFLEAVLHKFSGGPVGLDNVAAAIGESTDTIEDVIEPY 313

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           +IQQGF+QRTPRGR+    A++H G+  
Sbjct: 314 LIQQGFLQRTPRGRMATASAFEHFGLMP 341


>gi|315126272|ref|YP_004068275.1| Holliday junction DNA helicase B [Pseudoalteromonas sp. SM9913]
 gi|315014786|gb|ADT68124.1| Holliday junction DNA helicase B [Pseudoalteromonas sp. SM9913]
          Length = 335

 Score =  381 bits (979), Expect = e-104,   Method: Composition-based stats.
 Identities = 189/332 (56%), Positives = 244/332 (73%), Gaps = 1/332 (0%)

Query: 1   MMDREGLLSR-NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+     + ED     +RP+ L ++ GQ      +++FIEAA++R+EALDH+L 
Sbjct: 1   MIEADRLIDAAEKTNEDTIDRAIRPKLLADYRGQPHVKQQMEIFIEAARSRSEALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA EL VN ++TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANELNVNIKTTSGPVLEKAGDLAALLTNLEEGDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEEILYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 QVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPAFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY +EDL  IV R A    L + D+ A EIA RSRGTPRIA RLLRRVRD+ +V    
Sbjct: 181 LEFYSVEDLSHIVGRSAHYLSLEMCDDGAAEIAKRSRGTPRIANRLLRRVRDYTQVKSDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           T+  E+A  AL  + +DK GFD +D +YL  I   F GGPVG++ ++A + E ++ IED+
Sbjct: 241 TVNAEVAQQALDMIDVDKSGFDYMDRKYLLAIIEKFMGGPVGLDNLAAAIGEEKETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           IEP++IQQGFIQRTPRGR++   A+ H G+  
Sbjct: 301 IEPFLIQQGFIQRTPRGRIVSDNAYHHFGLLP 332


>gi|255656789|ref|ZP_05402198.1| Holliday junction DNA helicase RuvB [Clostridium difficile
           QCD-23m63]
 gi|296452381|ref|ZP_06894082.1| crossover junction ATP-dependent DNA helicase RuvB [Clostridium
           difficile NAP08]
 gi|296877730|ref|ZP_06901757.1| crossover junction ATP-dependent DNA helicase RuvB [Clostridium
           difficile NAP07]
 gi|296258711|gb|EFH05605.1| crossover junction ATP-dependent DNA helicase RuvB [Clostridium
           difficile NAP08]
 gi|296431263|gb|EFH17083.1| crossover junction ATP-dependent DNA helicase RuvB [Clostridium
           difficile NAP07]
          Length = 339

 Score =  381 bits (979), Expect = e-104,   Method: Composition-based stats.
 Identities = 180/332 (54%), Positives = 244/332 (73%), Gaps = 1/332 (0%)

Query: 3   DREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           D   +++  +  ED DI   LRP+TLE++ GQ ++   L +FIEAAK+R E LDHVL  G
Sbjct: 6   DENRIITSTMKVEDIDIENSLRPKTLEDYLGQEKSKEQLSIFIEAAKSRNEQLDHVLLYG 65

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+GVN R TSGP I +AGDLAA+LTNL + DVLFIDEIHR++  V
Sbjct: 66  PPGLGKTTLASIIANEMGVNLRITSGPAIERAGDLAAILTNLNENDVLFIDEIHRINRSV 125

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMEDF LD+++G+GPSARS++++L +FTLI ATTR G+LTNPL+DRFG+  +L+
Sbjct: 126 EEVLYPAMEDFCLDIIIGKGPSARSIRLDLPKFTLIGATTRAGMLTNPLRDRFGVICKLD 185

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y +++L  IV R + +    +    A E+A RSRGTPRIA RLL+RVRDFA+V     I
Sbjct: 186 YYTVDELSKIVLRSSNILDAKIQSNGALELAKRSRGTPRIANRLLKRVRDFAQVRADGKI 245

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T ++A  AL  L +D +G D +D + L  I   F GGPVG++T++A + E R+ IED+ E
Sbjct: 246 TDKVAKDALELLGVDSLGLDFVDEKLLMTIIEKFRGGPVGLDTLAASIGEDRNTIEDVYE 305

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           PY++Q GFI R PRGR+ MP+A++HL I  P+
Sbjct: 306 PYLLQLGFINRGPRGRVAMPLAYEHLKIPYPN 337


>gi|91785165|ref|YP_560371.1| Holliday junction DNA helicase B [Burkholderia xenovorans LB400]
 gi|296157352|ref|ZP_06840188.1| Holliday junction DNA helicase RuvB [Burkholderia sp. Ch1-1]
 gi|123062566|sp|Q13UC0|RUVB_BURXL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|91689119|gb|ABE32319.1| Holliday junction DNA helicase RuvB [Burkholderia xenovorans LB400]
 gi|295892688|gb|EFG72470.1| Holliday junction DNA helicase RuvB [Burkholderia sp. Ch1-1]
          Length = 355

 Score =  381 bits (979), Expect = e-104,   Method: Composition-based stats.
 Identities = 195/331 (58%), Positives = 245/331 (74%), Gaps = 2/331 (0%)

Query: 5   EGLLSRNV--SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           E +++       E+A    LRPR LEE+ GQ +    L++FIEAAK R+E+LDHVL  GP
Sbjct: 10  ERIIAATPVSPNEEAFERALRPRQLEEYVGQEKVRGQLEIFIEAAKRRSESLDHVLLFGP 69

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++ARE+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VE
Sbjct: 70  PGLGKTTLAHIIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVE 129

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILYPA+ED+Q+D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL F
Sbjct: 130 EILYPALEDYQIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEF 189

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  E L  IV R A L    +  + A EIA R+RGTPRIA RLLRRVRDFAEV     IT
Sbjct: 190 YNAEQLARIVTRSASLLHAQIHPDGAFEIAKRARGTPRIANRLLRRVRDFAEVKADGNIT 249

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            ++ADAAL  L +D +GFD +D + L  I   F GGPVG++ ++A + E RD IED++EP
Sbjct: 250 AQVADAALKMLDVDAVGFDLMDRKLLEAILHKFDGGPVGVDNLAAAIGEERDTIEDVLEP 309

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           Y+IQQGF+QRTPRGR+   + ++H G+  P 
Sbjct: 310 YLIQQGFLQRTPRGRVATLLTYRHFGLAAPD 340


>gi|84388520|ref|ZP_00991067.1| Holliday junction DNA helicase RuvB [Vibrio splendidus 12B01]
 gi|84377069|gb|EAP93940.1| Holliday junction DNA helicase RuvB [Vibrio splendidus 12B01]
          Length = 338

 Score =  381 bits (979), Expect = e-104,   Method: Composition-based stats.
 Identities = 193/335 (57%), Positives = 250/335 (74%), Gaps = 3/335 (0%)

Query: 1   MMDREGLLSRN---VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M++ + L++ +      ED     +RP+ L ++ GQ    + +++FI+AA+ R EALDH+
Sbjct: 1   MIEADRLIAPDNPVFKDEDVIDRAIRPKALADYQGQDHVRNQMEIFIQAAQMRNEALDHL 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTLA +VA E+ V+ R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRL
Sbjct: 61  LIFGPPGLGKTTLANIVANEMDVSIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           S +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI 
Sbjct: 121 SPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIT 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            RL +Y++EDL+ IVQR A   GL++  E A EIA R+RGTPRIA RLLRRVRD+AEV  
Sbjct: 181 QRLEYYKVEDLQNIVQRSADCLGLSLESEGALEIARRARGTPRIANRLLRRVRDYAEVKG 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
              I  ++AD AL  L +D  GFD +D + L  I   FGGGPVGI+ ++A + E RD IE
Sbjct: 241 NGHICPDVADKALNMLDVDAKGFDYMDRKLLLAIMEKFGGGPVGIDNMAAAIGEERDTIE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           D++EPY+IQQG++QRTPRGR+    A+ H GID P
Sbjct: 301 DVLEPYLIQQGYLQRTPRGRIATDRAYLHFGIDKP 335


>gi|298368822|ref|ZP_06980140.1| holliday junction DNA helicase RuvB [Neisseria sp. oral taxon 014
           str. F0314]
 gi|298282825|gb|EFI24312.1| holliday junction DNA helicase RuvB [Neisseria sp. oral taxon 014
           str. F0314]
          Length = 343

 Score =  381 bits (979), Expect = e-104,   Method: Composition-based stats.
 Identities = 199/331 (60%), Positives = 248/331 (74%), Gaps = 2/331 (0%)

Query: 5   EGLLSRN--VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           + +++     SQE+     LRP+TL ++ GQ +A   L +FI+AAK R EALDH L  GP
Sbjct: 13  QRIITAQNLSSQEELLERALRPKTLNDYIGQTKAKDQLAIFIQAAKKRGEALDHTLLFGP 72

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++A+ELGVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VE
Sbjct: 73  PGLGKTTLAHIIAKELGVNLRQTSGPVLERAGDLAALLTNLEPHDVLFIDEIHRLSPVVE 132

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILYPA+ED+QLD+M+GEGP+ARSVKI+L  FTLI ATTR G+LTNPL+DRFGI  RL F
Sbjct: 133 EILYPALEDYQLDIMIGEGPAARSVKIDLPPFTLIGATTRAGMLTNPLRDRFGIVSRLEF 192

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           YE +DL TIV R A+L  L +  + A E+A RSRGTPRIA RLLRRVRD+A+V +   I 
Sbjct: 193 YEDKDLATIVSRSAQLLQLNMGSDGAMEVAKRSRGTPRIANRLLRRVRDYADVKNNGVID 252

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            EIADAAL+ L +D  G D +D ++L  I   FGGGPVG++ I+A + E  D IED+IEP
Sbjct: 253 AEIADAALIMLDVDAQGLDVMDRKFLEAILHKFGGGPVGLDNIAAAIGESTDTIEDVIEP 312

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           Y+IQQGF+QRTPRGR+    ++ H G+ I  
Sbjct: 313 YLIQQGFLQRTPRGRVATERSYLHFGLKITE 343


>gi|261821380|ref|YP_003259486.1| Holliday junction DNA helicase RuvB [Pectobacterium wasabiae
           WPP163]
 gi|261605393|gb|ACX87879.1| Holliday junction DNA helicase RuvB [Pectobacterium wasabiae
           WPP163]
          Length = 334

 Score =  381 bits (979), Expect = e-104,   Method: Composition-based stats.
 Identities = 188/331 (56%), Positives = 249/331 (75%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S +   +E+     +RP+ L+E+ GQ +    +++FI+AA+ R +ALDH+L 
Sbjct: 1   MIEADRLISADAIPEEEFLDRAMRPKLLKEYVGQPQVREQMEIFIQAARKRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAALLTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNMRTTSGPVLEKAGDLAALLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY + DL+ IV R A+  GL +T E + E+A R+RGTPRIA RLLRRVRDF+EV    
Sbjct: 181 LEFYNVADLQYIVGRSAQCLGLDLTPEGSLEVARRARGTPRIANRLLRRVRDFSEVKSEG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT ++A  AL  LA+D  GFD +D + L  I   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 AITGDVATQALDMLAVDTEGFDYMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           +EP++IQQGFIQRTPRGR+    A++H G+ 
Sbjct: 301 LEPFLIQQGFIQRTPRGRMATQHAYRHFGLT 331


>gi|167766363|ref|ZP_02438416.1| hypothetical protein CLOSS21_00867 [Clostridium sp. SS2/1]
 gi|317496791|ref|ZP_07955121.1| Holliday junction DNA helicase RuvB [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|167711954|gb|EDS22533.1| hypothetical protein CLOSS21_00867 [Clostridium sp. SS2/1]
 gi|291559234|emb|CBL38034.1| Holliday junction DNA helicase, RuvB subunit [butyrate-producing
           bacterium SSC/2]
 gi|316895803|gb|EFV17955.1| Holliday junction DNA helicase RuvB [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 334

 Score =  381 bits (979), Expect = e-104,   Method: Composition-based stats.
 Identities = 178/331 (53%), Positives = 241/331 (72%), Gaps = 1/331 (0%)

Query: 4   REGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           +  ++S  + +ED  I   LRP+ L ++ GQ +   NLK+FIEAAK+R E+LDHVLF GP
Sbjct: 2   QNRMISTELVEEDIKIENHLRPQMLSDYIGQEKVKENLKIFIEAAKSRGESLDHVLFYGP 61

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA +VA E+GV+ + TSGP I K G++AA+L NL++ DVLFIDEIHRL+  VE
Sbjct: 62  PGLGKTTLAGIVANEMGVHLKVTSGPAIEKPGEIAAILNNLQEGDVLFIDEIHRLNRQVE 121

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMED+ +D++VG+G +ARS+++ L RFTL+ ATTR G+LT PL+DRFG+  RLNF
Sbjct: 122 EVLYPAMEDYAIDILVGKGQAARSIRLELPRFTLVGATTRAGMLTAPLRDRFGVVNRLNF 181

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  E+L+TI++R A++  + +  E A EIA RSRGTPR+A RLL+RVRDFA+V +   IT
Sbjct: 182 YNSEELQTIIERSAEVLEIGIDPEGALEIARRSRGTPRLANRLLKRVRDFAQVKYDGQIT 241

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            EIA  AL  L +D +G DQ D   L  +   F G PVG++T++A + E    IED+ EP
Sbjct: 242 LEIARDALNHLEVDTIGLDQTDRNLLKTMMETFEGRPVGLDTLAAAIGEDSGTIEDVYEP 301

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           Y+IQ G IQRTPRGR++   A++H  + IP 
Sbjct: 302 YLIQNGLIQRTPRGRVVTRSAYEHFHLPIPE 332


>gi|225018932|ref|ZP_03708124.1| hypothetical protein CLOSTMETH_02883 [Clostridium methylpentosum
           DSM 5476]
 gi|224948312|gb|EEG29521.1| hypothetical protein CLOSTMETH_02883 [Clostridium methylpentosum
           DSM 5476]
          Length = 352

 Score =  381 bits (979), Expect = e-104,   Method: Composition-based stats.
 Identities = 183/340 (53%), Positives = 244/340 (71%), Gaps = 6/340 (1%)

Query: 1   MMDRE-----GLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEAL 54
           M DRE      + + + S ED D+   LRP+TL E+ GQ +A  NL ++IEAA+ R EAL
Sbjct: 9   MFDRETDFENRITTPDFSPEDVDVEFTLRPKTLGEYIGQDKAKENLSIYIEAARQRGEAL 68

Query: 55  DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEI 114
           DHVL  GPPGLGKTTL+ ++A E+ VN R TSGP I K GDLAALL+NL + DVLFIDEI
Sbjct: 69  DHVLLYGPPGLGKTTLSMIIANEMNVNIRVTSGPAIEKPGDLAALLSNLNENDVLFIDEI 128

Query: 115 HRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRF 174
           HRLS  VEE+LYPAMED+ LD+++G+GP+ARS++I+L +FTL+ ATTR G LT PL+DRF
Sbjct: 129 HRLSRAVEEVLYPAMEDYALDIIIGKGPAARSIRIDLPKFTLVGATTRAGQLTAPLRDRF 188

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
           G+ +RL  Y  E L  I+ R A L  +    E A E+A RSRGTPRIA RLL+RVRDFA+
Sbjct: 189 GVILRLELYTDEQLCEIILRSAALLQIPCDREGALELARRSRGTPRIANRLLKRVRDFAQ 248

Query: 235 VAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRD 294
           V     +++++   +L +L ID++G + LD R L+ + +N+GGGPVG+ETI+A L E   
Sbjct: 249 VLGDGVVSKDVVGTSLDKLEIDELGLEPLDRRMLSTMIKNYGGGPVGLETIAAVLGEEAV 308

Query: 295 AIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
            IED+ EPY++Q GF+ RTPRGR +  +A+QHLG+    +
Sbjct: 309 TIEDVYEPYLMQLGFLSRTPRGRCVTALAYQHLGLTQDGQ 348


>gi|325661159|ref|ZP_08149786.1| Holliday junction ATP-dependent DNA helicase ruvB [Lachnospiraceae
           bacterium 4_1_37FAA]
 gi|325472666|gb|EGC75877.1| Holliday junction ATP-dependent DNA helicase ruvB [Lachnospiraceae
           bacterium 4_1_37FAA]
          Length = 333

 Score =  381 bits (978), Expect = e-104,   Method: Composition-based stats.
 Identities = 172/333 (51%), Positives = 241/333 (72%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M +  + + N+ ++    S LRP  L+++ GQ +A   LK++IEAAKAR E+LDHVLF G
Sbjct: 1   MAKRIITTENLEEDVKIESHLRPTLLKDYIGQEKAKETLKIYIEAAKARGESLDHVLFYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+ VN + TSGP I K G++AA+L NL++ DVLF+DEIHRL+  V
Sbjct: 61  PPGLGKTTLAGIIANEMEVNVKITSGPAIEKPGEMAAILNNLQEGDVLFVDEIHRLNRQV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMED+ +D+M+G+G  ARS++++L  FTL+ ATTR G+LT PL+DRFG+  RL 
Sbjct: 121 EEVLYPAMEDYVIDIMIGKGAGARSIRLDLPHFTLVGATTRAGMLTAPLRDRFGVVQRLE 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY  E+L+TI+ R A + G+ +  + A E+A RSRGTPR+A RLL+RVRDFA+V +   I
Sbjct: 181 FYTEEELRTIIMRSADVLGVEIDAKGALELAKRSRGTPRLANRLLKRVRDFAQVKYDGRI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T E+A+ AL  L +D+ G D +D   L  +   F GGPVG+ET++A + E    IED+ E
Sbjct: 241 TEEVANYALDLLDVDRYGLDHVDRNLLLAMIEKFQGGPVGLETLAASIGEDSGTIEDVCE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           PY+++ GFIQRTPRGR++   A+ HLGI   ++
Sbjct: 301 PYLLKNGFIQRTPRGRVVTDKAYAHLGISYKNQ 333


>gi|77360813|ref|YP_340388.1| Holliday junction DNA helicase B [Pseudoalteromonas haloplanktis
           TAC125]
 gi|97190221|sp|Q3IIJ2|RUVB_PSEHT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|76875724|emb|CAI86945.1| Holliday junction helicase, subunit B [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 335

 Score =  381 bits (978), Expect = e-104,   Method: Composition-based stats.
 Identities = 191/334 (57%), Positives = 244/334 (73%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSR-NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+       ED+    +RP+ L ++ GQ      +++FIEAA++R EALDH+L 
Sbjct: 1   MIEADRLIDATEKPNEDSIDRAIRPKLLADYRGQPHVKQQMEIFIEAARSRGEALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA EL VN ++TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANELQVNIKATSGPVLEKAGDLAALLTNLEEGDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEEILYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 QVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPSFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY +EDL  IV R A    L + DE A EIA RSRGTPRIA RLLRRVRD+ +V    
Sbjct: 181 LEFYSVEDLSYIVGRSAHFLDLEMCDEGAVEIAKRSRGTPRIANRLLRRVRDYTQVKSDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           T+  E+A+ AL  + +DK GFD +D +YL  I   F GGPVG++ I+A + E ++ IED+
Sbjct: 241 TVNAEVAELALNMIDVDKSGFDYMDRKYLLAIIEKFMGGPVGLDNIAAAIGEEKETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           IEP++IQQGFIQRTPRGR++   A+ H G+    
Sbjct: 301 IEPFLIQQGFIQRTPRGRIVSDNAYHHFGLLPKQ 334


>gi|54308310|ref|YP_129330.1| Holliday junction DNA helicase RuvB [Photobacterium profundum SS9]
 gi|62288987|sp|Q6LT48|RUVB_PHOPR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|46912738|emb|CAG19528.1| putative holliday junction DNA helicase RuvB [Photobacterium
           profundum SS9]
          Length = 337

 Score =  381 bits (978), Expect = e-104,   Method: Composition-based stats.
 Identities = 189/335 (56%), Positives = 246/335 (73%), Gaps = 2/335 (0%)

Query: 1   MMDREGLLSR--NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M++ + L+S       ++     +RP+ L ++ GQ      +++FI+AA+ R EALDH+L
Sbjct: 1   MIEADRLISNSFESRDDEVIDRAIRPKLLNDYQGQDHVRGQMEIFIKAAQLREEALDHLL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA +VA E+GV+ R+TSGPV+ KAGDLAALLTNLE  DVLFIDEIHRLS
Sbjct: 61  IFGPPGLGKTTLANIVANEMGVSIRTTSGPVLEKAGDLAALLTNLEPNDVLFIDEIHRLS 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
             VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  
Sbjct: 121 PHVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGITQ 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           RL +Y+++DLK IVQR A   GL++ +E A E+A R+RGTPRIA RLLRRVRD+AEV   
Sbjct: 181 RLEYYKVDDLKDIVQRSANCLGLSMEEEGALEMAQRARGTPRIANRLLRRVRDYAEVVGN 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             I  + A  AL  L +D  GFD +D + L  I   F GGPVG++ ++A + E +D IED
Sbjct: 241 GIICSDTAKKALDMLDVDSSGFDYMDRKLLLAIIDKFMGGPVGLDNLAAAIGEEKDTIED 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           ++EPY+IQQGF+QRTPRGR+    A+ H G+DIP 
Sbjct: 301 VLEPYLIQQGFLQRTPRGRIATHRAYLHFGLDIPE 335


>gi|121603425|ref|YP_980754.1| Holliday junction DNA helicase RuvB [Polaromonas naphthalenivorans
           CJ2]
 gi|171769286|sp|A1VJK5|RUVB_POLNA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|120592394|gb|ABM35833.1| Holliday junction DNA helicase RuvB [Polaromonas naphthalenivorans
           CJ2]
          Length = 356

 Score =  381 bits (978), Expect = e-104,   Method: Composition-based stats.
 Identities = 188/325 (57%), Positives = 238/325 (73%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           +    +E+A    LRP+  +++ GQ +A   L++FI AA  R EALDHVL  GPPGLGKT
Sbjct: 23  APASPKEEAIERALRPKLFDDYVGQTKAREQLEIFIGAANKRQEALDHVLLFGPPGLGKT 82

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           TL+ ++A ELGVN RSTSGPV+ K  DLAALLTNLE  DVLFIDEIHRLS +VEEILYPA
Sbjct: 83  TLSHIIAHELGVNMRSTSGPVLEKPKDLAALLTNLEKNDVLFIDEIHRLSPVVEEILYPA 142

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +ED+Q+D+M+GEGP+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  E+L
Sbjct: 143 LEDYQIDIMIGEGPAARSIKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTPEEL 202

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             IV+R A L    +  E   EIA RSRGTPRIA RLLRRVRD+A+V    TIT +IA+ 
Sbjct: 203 ARIVKRSAGLLNAPMDAEGGFEIARRSRGTPRIANRLLRRVRDYADVKGNGTITLDIANR 262

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL  L +D  GFD +D ++L  +   F GGPVG++ I+A + E    IED+IEPY+IQQG
Sbjct: 263 ALAMLDVDPQGFDLMDRKFLEAVILRFDGGPVGLDNIAASIGEESGTIEDVIEPYLIQQG 322

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIPH 333
           F+QRTPRGR+    A++HLG+  P 
Sbjct: 323 FLQRTPRGRIATLAAYRHLGVAPPR 347


>gi|163855206|ref|YP_001629504.1| Holliday junction DNA helicase RuvB [Bordetella petrii DSM 12804]
 gi|163258934|emb|CAP41233.1| holliday junction DNA helicase [Bordetella petrii]
          Length = 353

 Score =  381 bits (978), Expect = e-104,   Method: Composition-based stats.
 Identities = 187/332 (56%), Positives = 237/332 (71%), Gaps = 2/332 (0%)

Query: 3   DREGLLSRNV--SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           D   L++       E++    LRP+ L+E+ GQ  A   L++FI AA+ R EALDHVL  
Sbjct: 13  DAPRLVTPQPVSPNEESIERALRPKALQEYVGQQRAREQLEIFIAAARKRGEALDHVLLF 72

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A E+GV  R TSGPV+ + GDLAALLTNLE  DVLFIDEIHRLS +
Sbjct: 73  GPPGLGKTTLAHIIAHEMGVQLRQTSGPVLERPGDLAALLTNLEKNDVLFIDEIHRLSPV 132

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILYPA+EDFQ+D+++GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL
Sbjct: 133 VEEILYPALEDFQIDILIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVSRL 192

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  +DL  IV R A L    +T + A E+A RSRGTPRIA RLLRRVRD+A+V    T
Sbjct: 193 EFYNADDLARIVTRSAGLLQAEITPDGAAEVARRSRGTPRIANRLLRRVRDYAQVKSHGT 252

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I  + A  AL  L +D  G D +D + L  I   F GGPVG+++++A + E RD IED+I
Sbjct: 253 IDADSAGRALAMLEVDPQGLDLMDRKLLEAIIHKFDGGPVGVDSLAAAIGEERDTIEDVI 312

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EPY+IQ G++QRTPRGR+     W+HLG+  P
Sbjct: 313 EPYLIQHGYLQRTPRGRMATQTTWRHLGLAPP 344


>gi|238020684|ref|ZP_04601110.1| hypothetical protein GCWU000324_00574 [Kingella oralis ATCC 51147]
 gi|237867664|gb|EEP68670.1| hypothetical protein GCWU000324_00574 [Kingella oralis ATCC 51147]
          Length = 343

 Score =  381 bits (978), Expect = e-104,   Method: Composition-based stats.
 Identities = 203/321 (63%), Positives = 246/321 (76%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           +QE+     LRP+TL ++ GQ +A   L +FI AAK R+EALDH L  GPPGLGKTTLA 
Sbjct: 23  AQEEQLERALRPKTLADYIGQHKAKEQLAIFIAAAKKRSEALDHSLLFGPPGLGKTTLAN 82

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++ARELGVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPAMED+
Sbjct: 83  IIARELGVNLRQTSGPVLERAGDLAALLTNLEPHDVLFIDEIHRLSPVVEEILYPAMEDY 142

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           QLD+M+GEGP+ARSVKI+L  FTLI ATTR G+LTNPL+DRFGI  RL FYE  DL TIV
Sbjct: 143 QLDIMIGEGPAARSVKIDLPPFTLIGATTRAGMLTNPLRDRFGIVARLEFYETRDLATIV 202

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R A+L G+ + +  A EIA RSRGTPRIA RLLRRVRD+AEV H  +IT  IADAAL  
Sbjct: 203 ARSAQLLGMDLDEHGALEIARRSRGTPRIANRLLRRVRDYAEVKHTGSITAPIADAALSM 262

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +DK+G D +D ++L  +   F GGPVG++ I+A + E  D IED+IEPY+IQQGF+QR
Sbjct: 263 LDVDKIGLDMMDRKFLEAVLHKFSGGPVGLDNIAAAIGESTDTIEDVIEPYLIQQGFLQR 322

Query: 313 TPRGRLLMPIAWQHLGIDIPH 333
           TPRGR+    A++H G+  P 
Sbjct: 323 TPRGRMATAGAFEHFGLTAPE 343


>gi|296313653|ref|ZP_06863594.1| holliday junction DNA helicase RuvB [Neisseria polysaccharea ATCC
           43768]
 gi|296839793|gb|EFH23731.1| holliday junction DNA helicase RuvB [Neisseria polysaccharea ATCC
           43768]
          Length = 343

 Score =  381 bits (978), Expect = e-104,   Method: Composition-based stats.
 Identities = 196/329 (59%), Positives = 248/329 (75%), Gaps = 2/329 (0%)

Query: 5   EGLLSRNV--SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           + +++     SQE+     LRP+TL+++ GQ +A   L +FI+AAK R EALDH L  GP
Sbjct: 13  QRIITAQSISSQEELLERALRPKTLDDYIGQDKAKEQLAIFIQAAKKRGEALDHTLLFGP 72

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++A+ELGVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VE
Sbjct: 73  PGLGKTTLAHIIAKELGVNLRQTSGPVLERAGDLAALLTNLEPHDVLFIDEIHRLSPVVE 132

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILYPA+ED+QLD+M+GEGP+ARSVKI+L  FTL+ ATTR G+LTNPL+DRFGI  RL F
Sbjct: 133 EILYPALEDYQLDIMIGEGPAARSVKIDLPPFTLVGATTRAGMLTNPLRDRFGIVARLEF 192

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y+ +DL TIV R A+L  L + +E A E+A RSRGTPRIA RLLRRVRDFA+V +   I 
Sbjct: 193 YQNQDLATIVSRSAQLLQLDMGEEGAMEVAKRSRGTPRIANRLLRRVRDFADVKNNGVID 252

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             +ADAAL  L +D  G D +D ++L  I   FGGGPVG++ ++A + E  D IED+IEP
Sbjct: 253 AAVADAALSMLDVDAQGLDVMDRKFLEAILHKFGGGPVGLDNVAAAIGESTDTIEDVIEP 312

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           Y+IQQGF+QRTPRGR+    A+ H G+ +
Sbjct: 313 YLIQQGFLQRTPRGRMATERAYLHFGLPV 341


>gi|88861318|ref|ZP_01135949.1| Holliday junction helicase, subunit B [Pseudoalteromonas tunicata
           D2]
 gi|88816697|gb|EAR26521.1| Holliday junction helicase, subunit B [Pseudoalteromonas tunicata
           D2]
          Length = 335

 Score =  381 bits (978), Expect = e-104,   Method: Composition-based stats.
 Identities = 191/330 (57%), Positives = 247/330 (74%), Gaps = 1/330 (0%)

Query: 1   MMDREGLLSR-NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L++      ED+    +RP+ L ++TGQ      +++FI+AA +R EALDH+L 
Sbjct: 1   MIEADRLIAPSEAGNEDSIDRAIRPKMLADYTGQPHVKGQMEIFIQAANSRQEALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA ELGV+ ++TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANELGVSIKTTSGPVLEKAGDLAAMLTNLEAHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            +EEILYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 HIEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY + DL +IV+R A    L + DE A EIAMRSRGTPRIA RLLRRVRD+A+V    
Sbjct: 181 LEFYSVADLSSIVKRSAHYLNLQMDDEGANEIAMRSRGTPRIANRLLRRVRDYAQVKADG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           T+ + IA  AL  + +DK GFD +D +YL  +   F GGPVG++ I+A + E R+ IED+
Sbjct: 241 TVNQHIASLALDMVDVDKQGFDFMDRKYLLAVIEKFSGGPVGLDNIAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           IEPY+IQQGFIQRTPRGR++   A+ H G+
Sbjct: 301 IEPYLIQQGFIQRTPRGRIVSDRAYLHFGL 330


>gi|307266569|ref|ZP_07548101.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306918423|gb|EFN48665.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 338

 Score =  381 bits (978), Expect = e-104,   Method: Composition-based stats.
 Identities = 179/331 (54%), Positives = 244/331 (73%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
            E +L+++ +QEDA    LRPR L E+ GQ +    LK++IEAAK R E LDHVL  GPP
Sbjct: 2   EERILTQSFTQEDASEYSLRPRWLSEYIGQQKIKEELKIYIEAAKMRKEPLDHVLLYGPP 61

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA V++ E+GV  + TSGP I K+GDLAA+LTNL++ D+LFIDEIHRL+  VEE
Sbjct: 62  GLGKTTLATVISNEMGVGIKITSGPAIEKSGDLAAILTNLQENDILFIDEIHRLNRSVEE 121

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILYPAMEDF+LD+++G+GPSARS++++L RFTLI ATTR  L+T+PL+DRFG+  RL++Y
Sbjct: 122 ILYPAMEDFELDIVIGKGPSARSIRLSLPRFTLIGATTRAALMTSPLRDRFGVINRLDYY 181

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            +E+LK I++R A +  + + ++AA EIA RSRGTPRIA RLL+RVRDFA+V     I  
Sbjct: 182 SVEELKEIIKRSANILNIGIDEDAAFEIAERSRGTPRIANRLLKRVRDFAQVRGNGYIDF 241

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           + +  AL  L +D+MG + +D + L  I   FGGGPVGI+ I+A + E  D IED+ EPY
Sbjct: 242 KTSKEALDVLGVDEMGLEYIDRKILVSIIEKFGGGPVGIDAIAASIGEDGDTIEDVYEPY 301

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           ++Q GF+ RTPRGR++  +A+ +L      +
Sbjct: 302 LLQIGFLNRTPRGRVVTKLAYDYLKYPYIEQ 332


>gi|307130889|ref|YP_003882905.1| ATP-dependent DNA helicase, component of RuvABC resolvasome
           [Dickeya dadantii 3937]
 gi|306528418|gb|ADM98348.1| ATP-dependent DNA helicase, component of RuvABC resolvasome
           [Dickeya dadantii 3937]
          Length = 334

 Score =  381 bits (978), Expect = e-104,   Method: Composition-based stats.
 Identities = 189/331 (57%), Positives = 249/331 (75%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S  V + E+     +RP+ L E+ GQ      +++FIEAA+ R +ALDH+L 
Sbjct: 1   MIEADRLISPGVVADEELQDRAIRPKLLSEYVGQPVVREQMEIFIEAARKRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAALLTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAALLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IV+R A+  GL +TD+ A E+A RSRGTPRIA RLLRRVRDF+EV    
Sbjct: 181 LEFYQVADLQHIVKRSAQCLGLDMTDDGALEVARRSRGTPRIANRLLRRVRDFSEVKSDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I+  +A  AL  LA+D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 AISATVAIQALDMLAVDSEGFDYMDRKLLLAVIDKFMGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           +EPY+IQQGF+QRTPRGR+    A++H G+ 
Sbjct: 301 LEPYLIQQGFLQRTPRGRIATQHAYRHFGLT 331


>gi|170693378|ref|ZP_02884537.1| Holliday junction DNA helicase RuvB [Burkholderia graminis C4D1M]
 gi|170141533|gb|EDT09702.1| Holliday junction DNA helicase RuvB [Burkholderia graminis C4D1M]
          Length = 354

 Score =  381 bits (978), Expect = e-104,   Method: Composition-based stats.
 Identities = 196/331 (59%), Positives = 246/331 (74%), Gaps = 2/331 (0%)

Query: 5   EGLLSRNV--SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           E +++       E+A    LRPR LEE+ GQ +    L++FIEAAK R+E+LDHVL  GP
Sbjct: 10  ERIIAATPVSPNEEAFERALRPRQLEEYVGQEKVRGQLEIFIEAAKRRSESLDHVLLFGP 69

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++ARE+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VE
Sbjct: 70  PGLGKTTLAHIIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVE 129

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILYPA+ED+Q+D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL F
Sbjct: 130 EILYPALEDYQIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEF 189

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  E+L  IV R A L    +  + A EIA R+RGTPRIA RLLRRVRDFAEV     IT
Sbjct: 190 YNAEELARIVTRSASLLNAQIHPDGAFEIAKRARGTPRIANRLLRRVRDFAEVKADGNIT 249

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            E+ADAAL  L +D +GFD +D + L  I   F GGPVG++ ++A + E RD IED++EP
Sbjct: 250 AEVADAALRMLDVDAVGFDLMDRKLLEAILHKFDGGPVGVDNLAAAIGEERDTIEDVLEP 309

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           Y+IQQGF+QRTPRGR+   + ++H G+  P 
Sbjct: 310 YLIQQGFLQRTPRGRVATLLTYRHFGLAAPE 340


>gi|329893680|ref|ZP_08269814.1| Holliday junction DNA helicase RuvB [gamma proteobacterium
           IMCC3088]
 gi|328923607|gb|EGG30919.1| Holliday junction DNA helicase RuvB [gamma proteobacterium
           IMCC3088]
          Length = 350

 Score =  381 bits (978), Expect = e-104,   Method: Composition-based stats.
 Identities = 187/333 (56%), Positives = 245/333 (73%), Gaps = 2/333 (0%)

Query: 1   MMDREGLLSRNVS--QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M++ + L++       E+A    +RP++L ++ GQ      + +F+ AAK R E LDH L
Sbjct: 1   MIETDRLIAPQAEGRAEEAIDRAIRPKSLADYIGQSAVKEQMDIFLSAAKGRGEPLDHTL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA ++A E+GV+ ++TSGPV+ KAGD+AAL+TNLE  DVLFIDEIHRLS
Sbjct: 61  IFGPPGLGKTTLASIIANEMGVSLKTTSGPVLDKAGDIAALMTNLEPGDVLFIDEIHRLS 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
             VEE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ ATTR GLLT+PL+DRFGI  
Sbjct: 121 PFVEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGLLTSPLRDRFGIVQ 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           RL FY + DL TIV R AK+ G+ + +  A E+A RSRGTPRIA RLLRRVRDFAEV   
Sbjct: 181 RLEFYNVADLATIVARSAKIMGVDMEEGGAVEVARRSRGTPRIANRLLRRVRDFAEVKGD 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             +T+ IAD AL  L +D  GFD LD R L  +   F GGPVG+E+++A +SE R  IED
Sbjct: 241 GIVTQTIADRALDMLNVDVQGFDHLDRRLLLAMIEKFDGGPVGVESLAAAISEERGTIED 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           +IEPY+IQQG++ RTPRGR++   A+ H G+D+
Sbjct: 301 VIEPYLIQQGYMMRTPRGRMVTRNAYLHFGLDV 333


>gi|188591241|ref|YP_001795841.1| holliday junction DNA helicase ruvb [Cupriavidus taiwanensis LMG
           19424]
 gi|238692933|sp|B2AH72|RUVB_CUPTR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|170938135|emb|CAP63121.1| ATP-dependent DNA helicase, subunit B of RuvABC Holliday junction
           resolvasome [Cupriavidus taiwanensis LMG 19424]
          Length = 354

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 192/325 (59%), Positives = 246/325 (75%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           +   SQE+A    LRP+ L+E+ GQ +    L +F+ AA+ R EALDHVL  GPPGLGKT
Sbjct: 17  TPASSQEEAFERALRPKLLDEYVGQEKVRGQLDIFMHAARKRREALDHVLLFGPPGLGKT 76

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           TLA ++ARE+GV+ R TSGPV+ + GDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA
Sbjct: 77  TLAHIIAREMGVSLRQTSGPVLERPGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPA 136

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +ED+Q+D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  E+L
Sbjct: 137 LEDYQIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTAEEL 196

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             IV R A+L    +  + A EIA R+RGTPRIA RLLRRVRD+AEV    TITRE+ADA
Sbjct: 197 ARIVTRSAQLLQARIDPQGALEIARRARGTPRIANRLLRRVRDYAEVKGDGTITREMADA 256

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL  L +D++GFD +D + L  +   FGGGPVG++ ++A + E RD IED++EPY+IQQG
Sbjct: 257 ALAMLDVDRVGFDLMDRKLLEAVLHKFGGGPVGVDNLAAAIGEERDTIEDVLEPYLIQQG 316

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIPH 333
           ++QRTPRGR+    A++H G+  P 
Sbjct: 317 YLQRTPRGRVATAAAYRHFGLASPQ 341


>gi|148263481|ref|YP_001230187.1| Holliday junction DNA helicase RuvB [Geobacter uraniireducens Rf4]
 gi|189046034|sp|A5G9Y2|RUVB_GEOUR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|146396981|gb|ABQ25614.1| Holliday junction DNA helicase subunit RuvB [Geobacter
           uraniireducens Rf4]
          Length = 338

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 189/329 (57%), Positives = 248/329 (75%), Gaps = 1/329 (0%)

Query: 6   GLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
             ++ +++ +DA I   LRPR L+++ GQ +A  NL++FI+AA+ R EALDHVL  GPPG
Sbjct: 3   RTITPSITDDDALIEATLRPRALDDYVGQEKAKGNLRIFIDAARGRDEALDHVLLYGPPG 62

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLA ++A E+GVN +STSGPVI + GDLAA+LTNLE  DVLFIDEIHRLS +VEEI
Sbjct: 63  LGKTTLANIIACEMGVNIKSTSGPVIERPGDLAAILTNLEAHDVLFIDEIHRLSHVVEEI 122

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPAMEDFQLD+++G+GPSAR++K++L +FTL+ ATTR GLL++PL+DRFG+  RL FY 
Sbjct: 123 LYPAMEDFQLDIIIGQGPSARTIKLDLPKFTLVGATTRAGLLSSPLRDRFGVISRLEFYT 182

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            E+L  I+ R A++ G+ +  + A E+A RSRGTPRIA RLLRRVRDFA+V     IT +
Sbjct: 183 DEELAFIITRSARILGMEIKTDGAAEMARRSRGTPRIANRLLRRVRDFAQVKADGVITMK 242

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +   AL  L ID+MGFDQ+D   L  I   FGGGPVG++TI+A +SE  D IED+ EP++
Sbjct: 243 VVQDALALLEIDEMGFDQMDRMILLTIIDKFGGGPVGLDTIAAAISEESDTIEDVYEPFL 302

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           IQ GF+ RTPRGR+    A+ H G  +P 
Sbjct: 303 IQNGFLNRTPRGRVATKAAYLHFGRIVPE 331


>gi|210615645|ref|ZP_03290691.1| hypothetical protein CLONEX_02909 [Clostridium nexile DSM 1787]
 gi|210150188|gb|EEA81197.1| hypothetical protein CLONEX_02909 [Clostridium nexile DSM 1787]
          Length = 335

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 169/328 (51%), Positives = 239/328 (72%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M +  + + N+ ++    + LRP+ L ++ GQ +A   LK++IEAAK+R E+LDHVLF G
Sbjct: 3   MGKRIITTENLEEDVKIENHLRPQLLSDYIGQEKAKQTLKIYIEAAKSRKESLDHVLFYG 62

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+ VN + TSGP I K G++AA+L NL++ DVLF+DEIHRL+  V
Sbjct: 63  PPGLGKTTLAGIIANEMNVNLKVTSGPAIEKPGEIAAILNNLQEGDVLFVDEIHRLNRQV 122

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMED+ +D+M+G+G SARS++++L +FTL+ ATTR G+LT PL+DRFG+  RL 
Sbjct: 123 EEVLYPAMEDYAIDIMIGKGASARSIRLDLPKFTLVGATTRAGMLTAPLRDRFGVVNRLE 182

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY  ++L+TI+ R A + G+ +    A E+A RSRGTPR+A RLL+RVRDFA+V +   I
Sbjct: 183 FYTEKELQTIIMRSADVLGVEIEPNGALEMAKRSRGTPRLANRLLKRVRDFAQVKYDGVI 242

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T E+A  AL  L +D+ G D +D   L  I   F GGPVG++T++A + E    IED+ E
Sbjct: 243 TEEVAMYALDLLEVDRYGLDHIDRNILLTIIEKFQGGPVGLDTLAASIGEDSGTIEDVYE 302

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           PY+++ GFIQRTP+GR++   A+ HLGI
Sbjct: 303 PYLLKNGFIQRTPKGRVVTEFAYHHLGI 330


>gi|319941759|ref|ZP_08016081.1| Holliday junction ATP-dependent DNA helicase ruvB [Sutterella
           wadsworthensis 3_1_45B]
 gi|319804692|gb|EFW01559.1| Holliday junction ATP-dependent DNA helicase ruvB [Sutterella
           wadsworthensis 3_1_45B]
          Length = 350

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 189/320 (59%), Positives = 239/320 (74%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
             E+     LRP  L ++ GQ      L++FIEAA+ R + LDH+L  GPPGLGKTTLA 
Sbjct: 17  PNEENVDRALRPTRLADYVGQKAVREQLQIFIEAARRRGDPLDHLLLFGPPGLGKTTLAH 76

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           +VA E+GVN R TSGPV+ + GDLAA+LTNLE  DVLFIDEIHRLS +VEEILYPA+ED+
Sbjct: 77  IVAEEMGVNLRQTSGPVLERPGDLAAILTNLEKNDVLFIDEIHRLSPVVEEILYPALEDY 136

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           Q+D+M+GEGP+ARS+K++L  FTLI ATTR G LTNPL+ RFGI  +L FY  E+L TIV
Sbjct: 137 QIDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTNPLRARFGIVNQLQFYTTEELITIV 196

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           +R A+L G+++  E A EIA RSRGTPR+A RLLRRVRD+AEV H  TITRE+A AAL  
Sbjct: 197 RRSARLLGVSIDPEGAAEIASRSRGTPRVANRLLRRVRDYAEVRHDGTITREVASAALTM 256

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D +G D +D R+L  I   F GGPVGI+ ++A + E RD +ED++EPY+IQQGF+QR
Sbjct: 257 LDVDPVGLDFIDRRFLLTILEKFSGGPVGIDNLAAAIGEDRDTLEDVVEPYLIQQGFLQR 316

Query: 313 TPRGRLLMPIAWQHLGIDIP 332
           TPRGR+    AW+H  +  P
Sbjct: 317 TPRGRMAAHRAWEHFKLTPP 336


>gi|126700421|ref|YP_001089318.1| Holliday junction DNA helicase RuvB [Clostridium difficile 630]
 gi|254976400|ref|ZP_05272872.1| Holliday junction DNA helicase RuvB [Clostridium difficile
           QCD-66c26]
 gi|255093786|ref|ZP_05323264.1| Holliday junction DNA helicase RuvB [Clostridium difficile CIP
           107932]
 gi|255101976|ref|ZP_05330953.1| Holliday junction DNA helicase RuvB [Clostridium difficile
           QCD-63q42]
 gi|255307844|ref|ZP_05352015.1| Holliday junction DNA helicase RuvB [Clostridium difficile ATCC
           43255]
 gi|255315537|ref|ZP_05357120.1| Holliday junction DNA helicase RuvB [Clostridium difficile
           QCD-76w55]
 gi|255518200|ref|ZP_05385876.1| Holliday junction DNA helicase RuvB [Clostridium difficile
           QCD-97b34]
 gi|255651316|ref|ZP_05398218.1| Holliday junction DNA helicase RuvB [Clostridium difficile
           QCD-37x79]
 gi|260684380|ref|YP_003215665.1| Holliday junction DNA helicase RuvB [Clostridium difficile CD196]
 gi|260688039|ref|YP_003219173.1| Holliday junction DNA helicase RuvB [Clostridium difficile R20291]
 gi|306521148|ref|ZP_07407495.1| Holliday junction DNA helicase RuvB [Clostridium difficile
           QCD-32g58]
 gi|123363077|sp|Q183N8|RUVB_CLOD6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|115251858|emb|CAJ69693.1| Holliday junction ATP-dependent DNA helicase RuvB [Clostridium
           difficile]
 gi|260210543|emb|CBA65073.1| holliday junction DNA helicase [Clostridium difficile CD196]
 gi|260214056|emb|CBE06220.1| holliday junction DNA helicase [Clostridium difficile R20291]
          Length = 339

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 180/332 (54%), Positives = 244/332 (73%), Gaps = 1/332 (0%)

Query: 3   DREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           D   +++  +  ED DI   LRP+TLE++ GQ ++   L +FIEAAK+R E LDHVL  G
Sbjct: 6   DENRIITSTMKMEDIDIENSLRPKTLEDYLGQEKSKEQLSIFIEAAKSRNEQLDHVLLYG 65

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+GVN R TSGP I +AGDLAA+LTNL + DVLFIDEIHR++  V
Sbjct: 66  PPGLGKTTLASIIANEMGVNLRITSGPAIERAGDLAAILTNLNENDVLFIDEIHRINRSV 125

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMEDF LD+++G+GPSARS++++L +FTLI ATTR G+LTNPL+DRFG+  +L+
Sbjct: 126 EEVLYPAMEDFCLDIIIGKGPSARSIRLDLPKFTLIGATTRAGMLTNPLRDRFGVICKLD 185

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y +++L  IV R + +    +    A E+A RSRGTPRIA RLL+RVRDFA+V     I
Sbjct: 186 YYTVDELSKIVLRSSSILDAEIQSNGALELAKRSRGTPRIANRLLKRVRDFAQVRADGKI 245

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T ++A  AL  L +D +G D +D + L  I   F GGPVG++T++A + E R+ IED+ E
Sbjct: 246 TDKVAKDALELLGVDSLGLDFVDEKLLMTIIEKFRGGPVGLDTLAASIGEDRNTIEDVYE 305

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           PY++Q GFI R PRGR+ MP+A++HL I  P+
Sbjct: 306 PYLLQLGFINRGPRGRVAMPLAYEHLKIPYPN 337


>gi|325264008|ref|ZP_08130741.1| holliday junction DNA helicase RuvB [Clostridium sp. D5]
 gi|324031046|gb|EGB92328.1| holliday junction DNA helicase RuvB [Clostridium sp. D5]
          Length = 332

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 172/329 (52%), Positives = 240/329 (72%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M +  + + N+ ++    S LRP+ LE++ GQ +A   L ++I+AAK R EALDHVLF G
Sbjct: 1   MGKRIITTENLEEDVKIESSLRPQHLEDYIGQEKAKETLNIYIKAAKERQEALDHVLFYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+GVN + TSGP I K G++AA+L NL++ DVLF+DEIHRL+  V
Sbjct: 61  PPGLGKTTLAGIIANEMGVNMKITSGPAIEKPGEMAAILNNLQEHDVLFVDEIHRLNRQV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMED+ +D+M+G+G +ARS++++L +FTL+ ATTR G+LT PL+DRFG+   L 
Sbjct: 121 EEVLYPAMEDYAIDIMIGKGATARSIRLDLPKFTLVGATTRAGMLTAPLRDRFGVVNHLE 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY  E+LKTI+ R A++ G+ +    A E+A RSRGTPR+A RLL+RVRDFA+V +   I
Sbjct: 181 FYTEEELKTIIMRSAQVLGVEIDVNGALELAKRSRGTPRLANRLLKRVRDFAQVKYDGVI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T  +A+ AL  L +DK G D +D   L  +   F GGPVG++T+SA +SE    +ED+ E
Sbjct: 241 TEAVANYALDLLDVDKYGLDHIDRTILLTMIEKFQGGPVGLDTLSASISEDAGTLEDVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           PY+++ GFIQRTPRGR+   +A+ HLGI 
Sbjct: 301 PYLLKSGFIQRTPRGRVATELAYTHLGIP 329


>gi|319761304|ref|YP_004125241.1| holliday junction DNA helicase ruvb [Alicycliphilus denitrificans
           BC]
 gi|317115865|gb|ADU98353.1| Holliday junction DNA helicase RuvB [Alicycliphilus denitrificans
           BC]
          Length = 357

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 191/332 (57%), Positives = 242/332 (72%), Gaps = 2/332 (0%)

Query: 4   REGLLS--RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           RE ++S      QE+A    LRP+ L+E+ GQ +A   L++FI AA+ R+EALDHVL  G
Sbjct: 18  RERMVSAAPASQQEEALERALRPKLLQEYVGQAKAREQLEIFIGAARKRSEALDHVLLFG 77

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTL+ ++A ELGVN R TSGPV+ K  DLAALLTNLE  DVLFIDEIHRLS +V
Sbjct: 78  PPGLGKTTLSHIIAAELGVNLRQTSGPVLEKPKDLAALLTNLERNDVLFIDEIHRLSPVV 137

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILYPA+ED+Q+D+M+GEGP+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  RL 
Sbjct: 138 EEILYPALEDYQIDIMIGEGPAARSIKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLE 197

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY  E+L  IV R A L G  + D    EIA RSRGTPRIA RLLRRVRD+A+V     I
Sbjct: 198 FYTPEELALIVMRSASLLGTPIDDAGGAEIARRSRGTPRIANRLLRRVRDYADVKGTGRI 257

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T ++A+ AL  L +D  GFD +D + L  +   F GGPVG++ I+A + E    IED+IE
Sbjct: 258 TLDMANRALTLLDVDPQGFDVMDRKLLEAVVHRFDGGPVGLDNIAASIGEESGTIEDVIE 317

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           PY+IQQG++QRTPRGR+    A++HLG+  P 
Sbjct: 318 PYLIQQGYLQRTPRGRVATLAAYRHLGVAPPR 349


>gi|261378742|ref|ZP_05983315.1| holliday junction DNA helicase RuvB [Neisseria cinerea ATCC 14685]
 gi|269144897|gb|EEZ71315.1| holliday junction DNA helicase RuvB [Neisseria cinerea ATCC 14685]
          Length = 343

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 195/329 (59%), Positives = 247/329 (75%), Gaps = 2/329 (0%)

Query: 5   EGLLSRNV--SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           + +++     SQE+     LRP+TL+++ GQ +A   L +FI+AAK R EALDH L  GP
Sbjct: 13  QRIITAQSISSQEELLERALRPKTLDDYIGQDKAKEQLAIFIQAAKKRGEALDHTLLFGP 72

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++A+ELGVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VE
Sbjct: 73  PGLGKTTLAHIIAKELGVNLRQTSGPVLERAGDLAALLTNLEPHDVLFIDEIHRLSPVVE 132

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILYPA+ED+QLD+M+GEGP+ARSVKI+L  FTL+ ATTR G+LTNPL+DRFGI  RL F
Sbjct: 133 EILYPALEDYQLDIMIGEGPAARSVKIDLPPFTLVGATTRAGMLTNPLRDRFGIVARLEF 192

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y+ +DL TIV R A+L  L + +E A E+A RSRGTPRIA RLLRRVRDFA+V +   I 
Sbjct: 193 YQNQDLATIVSRSAQLLQLDMGEEGAMEVAKRSRGTPRIANRLLRRVRDFADVKNNGVID 252

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             +ADAAL  L +D  G D +D ++L  I   F GGPVG++ ++A + E  D IED+IEP
Sbjct: 253 AAVADAALSMLDVDAQGLDVMDRKFLEAILHKFSGGPVGLDNVAAAIGESTDTIEDVIEP 312

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           Y+IQQGF+QRTPRGR+    A+ H G+ +
Sbjct: 313 YLIQQGFLQRTPRGRVATERAYLHFGLPV 341


>gi|220932068|ref|YP_002508976.1| Holliday junction DNA helicase RuvB [Halothermothrix orenii H 168]
 gi|219993378|gb|ACL69981.1| Holliday junction DNA helicase RuvB [Halothermothrix orenii H 168]
          Length = 342

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 177/335 (52%), Positives = 241/335 (71%), Gaps = 2/335 (0%)

Query: 2   MDRE-GLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           MD E  ++S    ++D A    LRP  L  F GQ +    L +FIEAA  R E LDHVL 
Sbjct: 1   MDLENRIISPEKKEDDMALDRSLRPERLNNFIGQEKVKEKLSIFIEAAITRQEPLDHVLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A EL V+  +TSGP I + GDLAA+LTNL+ +DVLFIDEIHRL+ 
Sbjct: 61  YGPPGLGKTTLANIIANELNVSIHTTSGPAIERPGDLAAILTNLQPKDVLFIDEIHRLNK 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+ LD+++G+GPSARS++++L  FTL+ ATTR GLL++PL+DRFG+  R
Sbjct: 121 VVEEVLYPAMEDYSLDIIIGKGPSARSIRLDLPPFTLVGATTRAGLLSSPLRDRFGVINR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY  ++L  I++R A++ G+ V ++ A EI+ RSRGTPRIA RLL+RVRD+AEV    
Sbjct: 181 LEFYGTDELAEIIKRSARVLGIEVNEDGAVEISKRSRGTPRIANRLLKRVRDYAEVKADG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  E+ D AL  L ID++G D +D + L  I + F GGPVG+ T++A +SE  + IED+
Sbjct: 241 IIDTEVVDKALKLLEIDELGLDHIDHKLLKTIIKKFNGGPVGLNTLAASISEETETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
            EPY++Q GFI+RTPRGR+    A++HL +D  ++
Sbjct: 301 YEPYLLQLGFIERTPRGRVATLAAYEHLDVDYKNK 335


>gi|253688207|ref|YP_003017397.1| Holliday junction DNA helicase RuvB [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|259495673|sp|C6DFF2|RUVB_PECCP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|251754785|gb|ACT12861.1| Holliday junction DNA helicase RuvB [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 336

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 188/331 (56%), Positives = 247/331 (74%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S +   +E+     +RP+ L E+ GQ +    +++FI+AA+ R +ALDH+L 
Sbjct: 1   MIEADRLISADAIPEEEFLDRAMRPKLLNEYVGQPQVREQMEIFIQAARKRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAALLTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNMRTTSGPVLEKAGDLAALLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY + DL+ IV R A+  GL +T E + E+A R+RGTPRIA RLLRRVRDF+EV    
Sbjct: 181 LEFYNVADLQYIVGRSAQCLGLDLTPEGSLEVARRARGTPRIANRLLRRVRDFSEVKSEG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT  +A  AL  LA+D  GFD +D + L  I   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 AITGVVATQALDMLAVDTEGFDYMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           +EP++IQQGFIQRTPRGR+    A++H G+ 
Sbjct: 301 LEPFLIQQGFIQRTPRGRMATQHAYRHFGLT 331


>gi|171060624|ref|YP_001792973.1| Holliday junction DNA helicase RuvB [Leptothrix cholodnii SP-6]
 gi|238689127|sp|B1Y8E2|RUVB_LEPCP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|170778069|gb|ACB36208.1| Holliday junction DNA helicase RuvB [Leptothrix cholodnii SP-6]
          Length = 363

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 188/331 (56%), Positives = 239/331 (72%), Gaps = 2/331 (0%)

Query: 5   EGLLS--RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
             L+S       E+A    LRP+ L+E+ GQ +A   L++FI AA+ R+EALDHVL  GP
Sbjct: 20  RRLISAAPTSPNEEAMERALRPKLLQEYVGQAKAREQLEIFIGAARKRSEALDHVLLFGP 79

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTL+ ++A ELGVN R TSGPV+ K  DLAA+LTNLE  DVLFIDEIHRLS +VE
Sbjct: 80  PGLGKTTLSHIIAAELGVNLRQTSGPVLEKPKDLAAILTNLEANDVLFIDEIHRLSPVVE 139

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILYPA+ED+Q+D+M+GEGP+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  RL F
Sbjct: 140 EILYPALEDYQIDIMIGEGPAARSIKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEF 199

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  E+L  IV R A L  + +  E A E+A RSRGTPRIA RLLRRVRD+AEV     I 
Sbjct: 200 YTPEELVRIVTRSAGLLNVPIDAEGALELACRSRGTPRIANRLLRRVRDYAEVKSDGRIV 259

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           + IA+ AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E    IED+IEP
Sbjct: 260 KRIAELALTMLDVDPRGFDVMDRKLLEAVIHRFDGGPVGLDNVAAAIGEDAGTIEDVIEP 319

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           Y+IQQGF+QRTPRGR+    A++HLG+  P 
Sbjct: 320 YLIQQGFLQRTPRGRIATLAAYRHLGVTPPR 350


>gi|50121416|ref|YP_050583.1| Holliday junction DNA helicase RuvB [Pectobacterium atrosepticum
           SCRI1043]
 gi|68715450|sp|Q6D4A2|RUVB_ERWCT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|49611942|emb|CAG75391.1| holliday junction DNA helicase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 334

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 189/331 (57%), Positives = 249/331 (75%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSRN-VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S + V +E+     +RP+ L+E+ GQ +    +++FI+AA+ R +ALDH+L 
Sbjct: 1   MIEADRLISADAVPEEEFLDRAMRPKLLKEYVGQPQVREQMEIFIQAARKRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAALLTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNMRTTSGPVLEKAGDLAALLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY + DL+ IV R A+  GL +T E + E+A R+RGTPRIA RLLRRVRDF+EV    
Sbjct: 181 LEFYNVADLQYIVGRSAQCLGLDLTQEGSLEVARRARGTPRIANRLLRRVRDFSEVKSEG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT  +A  AL  LA+D  GFD +D + L  I   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 AITGTVATQALDMLAVDTEGFDYMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           +EP++IQQGFIQRTPRGR+    A++H G+ 
Sbjct: 301 LEPFLIQQGFIQRTPRGRMATQHAYRHFGLT 331


>gi|295677648|ref|YP_003606172.1| Holliday junction DNA helicase RuvB [Burkholderia sp. CCGE1002]
 gi|295437491|gb|ADG16661.1| Holliday junction DNA helicase RuvB [Burkholderia sp. CCGE1002]
          Length = 353

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 195/331 (58%), Positives = 247/331 (74%), Gaps = 2/331 (0%)

Query: 5   EGLLSRNV--SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           E +++       E+A    LRPR L+E+ GQ +    L++FIEAAK R+E+LDHVL  GP
Sbjct: 10  ERIIAATPVSPNEEAFERALRPRQLDEYVGQEKVRGQLEIFIEAAKRRSESLDHVLLFGP 69

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++ARE+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VE
Sbjct: 70  PGLGKTTLAHIIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVE 129

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILYPA+ED+Q+D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL F
Sbjct: 130 EILYPALEDYQIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEF 189

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  E+L  IV R A L G  +  + A EIA R+RGTPRIA RLLRRVRDFAEV     IT
Sbjct: 190 YNAEELARIVTRSAALLGAQIHPDGAFEIARRARGTPRIANRLLRRVRDFAEVKADGNIT 249

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            ++ADAAL  L +D +GFD +D + L  I   F GGPVG++ ++A + E RD IED++EP
Sbjct: 250 AQVADAALSMLDVDAVGFDLMDRKLLEAILYKFDGGPVGVDNLAAAIGEERDTIEDVLEP 309

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           Y+IQQGF+QRTPRGR+   + ++H G+  P 
Sbjct: 310 YLIQQGFLQRTPRGRVATLLTYRHFGLAAPD 340


>gi|187925319|ref|YP_001896961.1| Holliday junction DNA helicase RuvB [Burkholderia phytofirmans
           PsJN]
 gi|238689584|sp|B2SYK2|RUVB_BURPP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|187716513|gb|ACD17737.1| Holliday junction DNA helicase RuvB [Burkholderia phytofirmans
           PsJN]
          Length = 354

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 195/331 (58%), Positives = 246/331 (74%), Gaps = 2/331 (0%)

Query: 5   EGLLSRNV--SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           E +++       E+A    LRPR LEE+ GQ +    L++FIEAAK R+E+LDHVL  GP
Sbjct: 10  ERIIAATPVSPNEEAFERALRPRQLEEYVGQEKVRGQLEIFIEAAKRRSESLDHVLLFGP 69

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++ARE+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VE
Sbjct: 70  PGLGKTTLAHIIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVE 129

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILYPA+ED+Q+D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL F
Sbjct: 130 EILYPALEDYQIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEF 189

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  E+L  IV R A L    +  + A EIA R+RGTPRIA RLLRRVRDFAEV     IT
Sbjct: 190 YNAEELARIVTRSASLLNAQIHPDGAFEIAKRARGTPRIANRLLRRVRDFAEVKADGNIT 249

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            ++ADAAL  L +D +GFD +D + L  I   F GGPVG++ ++A + E RD IED++EP
Sbjct: 250 AQVADAALKMLDVDAVGFDLMDRKLLEAILHKFDGGPVGVDNLAAAIGEERDTIEDVLEP 309

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           Y+IQQGF+QRTPRGR+   + ++H G+  P 
Sbjct: 310 YLIQQGFLQRTPRGRVATLLTYRHFGLAAPD 340


>gi|120598877|ref|YP_963451.1| Holliday junction DNA helicase RuvB [Shewanella sp. W3-18-1]
 gi|166231557|sp|A1RJQ2|RUVB_SHESW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|120558970|gb|ABM24897.1| Holliday junction DNA helicase RuvB [Shewanella sp. W3-18-1]
 gi|319426433|gb|ADV54507.1| Holliday junction DNA helicase RuvB [Shewanella putrefaciens 200]
          Length = 334

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 199/334 (59%), Positives = 253/334 (75%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+   +  Q+D     +RP+ L+E+TGQ +  + LKVFI+AAK R EALDH+L 
Sbjct: 1   MIEADRLIQPQLQVQDDVVDRAMRPKLLDEYTGQDDTRAQLKVFIQAAKNRNEALDHMLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN +STSGPV+ KAGDLAALLTNLE  DVLFIDEIHRLS 
Sbjct: 61  YGPPGLGKTTLAMIVANEMGVNIKSTSGPVLEKAGDLAALLTNLESGDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ ATTR G LT+PL+ RFGIP+R
Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGALTSPLRARFGIPLR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY I+DL TIV R A++ GL +  E A EIA RSRGTPRIA RLLRRVRD+AEV H  
Sbjct: 181 LEFYNIKDLSTIVTRSAQVMGLEIDTEGAFEIARRSRGTPRIANRLLRRVRDYAEVKHDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT+ +AD AL  L +D  GFD +D + +  I   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 AITQFVADHALDLLDVDNEGFDYMDRKLMLAIIDKFMGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +EP++IQQGFIQRTPRGR+    A+QH  +  P 
Sbjct: 301 LEPFLIQQGFIQRTPRGRIATARAYQHFQLIKPE 334


>gi|189425232|ref|YP_001952409.1| Holliday junction DNA helicase RuvB [Geobacter lovleyi SZ]
 gi|238692114|sp|B3E468|RUVB_GEOLS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|189421491|gb|ACD95889.1| Holliday junction DNA helicase RuvB [Geobacter lovleyi SZ]
          Length = 338

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 194/331 (58%), Positives = 245/331 (74%), Gaps = 1/331 (0%)

Query: 5   EGLLSRNVSQEDAD-ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E  ++     +D    + LRPRTL+++ GQ +   NLK+FI+AAK R+EALDHVL  GPP
Sbjct: 2   ERAITPEKRDDDLQFDATLRPRTLQDYIGQEKIRENLKLFIDAAKGRSEALDHVLLYGPP 61

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++A E+GVN +STSGPVI + GDLAA+LTNLE  DVLFIDEIHRLS +VEE
Sbjct: 62  GLGKTTLANIIACEMGVNIKSTSGPVIERPGDLAAILTNLEPHDVLFIDEIHRLSHVVEE 121

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILYPAMEDFQLD+++G+GPSARS+K++L RFTL+ ATTR GLL++PL+DRFG+  RL FY
Sbjct: 122 ILYPAMEDFQLDIIIGQGPSARSIKLDLPRFTLVGATTRAGLLSSPLRDRFGVISRLEFY 181

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
             ++L  IV R A++ G+A+  E A E+A RSRGTPRIA RLLRRVRD+A+V     IT 
Sbjct: 182 THDELAFIVTRSARILGMAIDREGALELARRSRGTPRIANRLLRRVRDYAQVRADGAITL 241

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
            +    L  L ID+MGFDQ+D   L  I   FGGGPVG++TI A + E  D IED+ EP+
Sbjct: 242 SVVQETLRLLEIDEMGFDQMDRMILLTIIDKFGGGPVGLDTIGAAIGEESDTIEDVYEPF 301

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           +IQ GF+ RTPRGR+  P A+QH G   P R
Sbjct: 302 LIQNGFLNRTPRGRVATPAAYQHFGRLTPER 332


>gi|326201642|ref|ZP_08191513.1| Holliday junction DNA helicase RuvB [Clostridium papyrosolvens DSM
           2782]
 gi|325988242|gb|EGD49067.1| Holliday junction DNA helicase RuvB [Clostridium papyrosolvens DSM
           2782]
          Length = 335

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 186/334 (55%), Positives = 235/334 (70%), Gaps = 2/334 (0%)

Query: 1   MMD--REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M D   E L+      +D D   LRP+  +E+ GQ +A  NL VFIEAAK R EALDHVL
Sbjct: 1   MTDLTDERLVEAGNRSDDFDEVSLRPKRFDEYIGQSKAKGNLTVFIEAAKRRKEALDHVL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA +++ E+GVN R TSGP I KAGDLAA+LTNL   DVLFIDEIHRL+
Sbjct: 61  LYGPPGLGKTTLASIISLEMGVNLRITSGPAIEKAGDLAAILTNLGTHDVLFIDEIHRLN 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
             VEEILYPAMED+ LD+++G+GPSARS++++L +FTLI ATTR GLLT PL+DRFG+  
Sbjct: 121 RSVEEILYPAMEDYALDIIIGKGPSARSIRLDLPKFTLIGATTRAGLLTAPLRDRFGVIN 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           +L  Y  E+LK IV R A +  + +  E A EIA RSRGTPRIA RLL+RVRDFA+V  +
Sbjct: 181 KLEMYTSEELKEIVIRSAGILNIGLDQEGAYEIARRSRGTPRIANRLLKRVRDFAQVKGS 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             I  E+A  AL  L +D++G D +D   L  I   FGGGPVG++T++A + E    IED
Sbjct: 241 GVIELELAKHALDALEVDEIGLDGVDRNMLLSIINKFGGGPVGLDTLAASIGEESGTIED 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           + EPY+IQ GFI +TPRGR+    A+ H G++  
Sbjct: 301 VYEPYLIQLGFINKTPRGRMATKNAYAHFGLEYD 334


>gi|77919932|ref|YP_357747.1| Holliday junction DNA helicase RuvB [Pelobacter carbinolicus DSM
           2380]
 gi|97190190|sp|Q3A230|RUVB_PELCD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|77546015|gb|ABA89577.1| Holliday junction DNA helicase RuvB [Pelobacter carbinolicus DSM
           2380]
          Length = 341

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 191/330 (57%), Positives = 245/330 (74%), Gaps = 1/330 (0%)

Query: 5   EGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E  ++ + S +ED   + LRPR L E+ GQ +A  NL+VFI+AA+ R E+LDHVLF GPP
Sbjct: 3   ERFVTPDFSSEEDRLEASLRPRVLTEYIGQSKAKGNLQVFIDAARGRQESLDHVLFYGPP 62

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA +VA E+GV+ +STSGPVI K GDLAA+LTNL D DVLFIDEIHRLS +VEE
Sbjct: 63  GLGKTTLANIVASEMGVSIKSTSGPVIEKPGDLAAILTNLSDGDVLFIDEIHRLSPVVEE 122

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILYPAMED+QLD+++G+GPSAR++K+++ RFTL+ ATTR GLL++PL+DRFG+  RL FY
Sbjct: 123 ILYPAMEDYQLDIIIGQGPSARTIKLDIPRFTLVGATTRAGLLSSPLRDRFGVICRLEFY 182

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
             ++L TI  R A++  + +  +   EIA RSRGTPRIA RLLRRVRDFA+V     ITR
Sbjct: 183 TDDELATIAGRSARILDIPIEKDGQYEIARRSRGTPRIANRLLRRVRDFAQVKGDGIITR 242

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           +IAD AL RL +D  G D +D   L  I   F GGPVG+ET++A + E +D IED+IEPY
Sbjct: 243 DIADMALSRLEVDNCGLDHMDRLLLLAIIDKFAGGPVGLETLAAAVGEEKDTIEDVIEPY 302

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           ++Q GF+ RTPRGR     A++H    IP 
Sbjct: 303 LLQNGFLNRTPRGRTATERAYRHFQRQIPR 332


>gi|146293037|ref|YP_001183461.1| Holliday junction DNA helicase RuvB [Shewanella putrefaciens CN-32]
 gi|166231555|sp|A4Y6S9|RUVB_SHEPC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|145564727|gb|ABP75662.1| Holliday junction DNA helicase RuvB [Shewanella putrefaciens CN-32]
          Length = 334

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 199/334 (59%), Positives = 253/334 (75%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+   +  Q+D     +RP+ L+E+TGQ +  + LKVFI+AAK R EALDH+L 
Sbjct: 1   MIEADRLIQPQLQGQDDVVDRAMRPKLLDEYTGQDDTRAQLKVFIQAAKNRNEALDHMLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN +STSGPV+ KAGDLAALLTNLE  DVLFIDEIHRLS 
Sbjct: 61  YGPPGLGKTTLAMIVANEMGVNIKSTSGPVLEKAGDLAALLTNLESGDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ ATTR G LT+PL+ RFGIP+R
Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGALTSPLRARFGIPLR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY I+DL TIV R A++ GL +  E A EIA RSRGTPRIA RLLRRVRD+AEV H  
Sbjct: 181 LEFYNIKDLSTIVTRSAQVMGLEIDTEGAFEIARRSRGTPRIANRLLRRVRDYAEVKHDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT+ +AD AL  L +D  GFD +D + +  I   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 AITQFVADHALDLLDVDNEGFDYMDRKLMLAIIDKFMGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +EP++IQQGFIQRTPRGR+    A+QH  +  P 
Sbjct: 301 LEPFLIQQGFIQRTPRGRIATARAYQHFQLIKPE 334


>gi|24373976|ref|NP_718019.1| Holliday junction DNA helicase B [Shewanella oneidensis MR-1]
 gi|29336676|sp|Q8EEF3|RUVB_SHEON RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|24348422|gb|AAN55463.1|AE015683_10 Holliday junction DNA helicase RuvB [Shewanella oneidensis MR-1]
          Length = 334

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 198/334 (59%), Positives = 254/334 (76%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+   +  Q+D     +RP+ L+E+TGQ +  + LKVFI+AAK R EALDH+L 
Sbjct: 1   MIEADRLIQPQLQGQDDVIDRAMRPKLLDEYTGQDDTRAQLKVFIQAAKNREEALDHMLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN +STSGPV+ KAGDLAALLTNLE  DVLFIDEIHRLS 
Sbjct: 61  YGPPGLGKTTLAMIVANEMGVNIKSTSGPVLEKAGDLAALLTNLEAGDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ ATTR G LT+PL+ RFGIP+R
Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGALTSPLRARFGIPLR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY ++DL TIV R A++ GLA+  E A EIA RSRGTPRIA RLLRRVRD+AEV H  
Sbjct: 181 LEFYNVKDLSTIVTRSAQVMGLAIDSEGATEIAKRSRGTPRIANRLLRRVRDYAEVQHDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            +T+ +A+ AL  L +D  GFD +D + L  I   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 AVTQNVAELALNLLDVDGEGFDYMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +EP++IQQGFIQRTPRGR+    A+ H G+  P 
Sbjct: 301 LEPFLIQQGFIQRTPRGRIATARAYVHFGMIKPE 334


>gi|124265520|ref|YP_001019524.1| Holliday junction DNA helicase RuvB [Methylibium petroleiphilum
           PM1]
 gi|171769833|sp|A2SCK0|RUVB_METPP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|124258295|gb|ABM93289.1| putative holliday junction DNA helicase protein [Methylibium
           petroleiphilum PM1]
          Length = 355

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 184/324 (56%), Positives = 232/324 (71%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           +     E+A    LRP+ L ++ GQ +A   L++FI AA+ R+EALDHVL  GPPGLGKT
Sbjct: 22  APASPNEEAIERALRPKGLADYVGQAKAREQLEIFIGAARKRSEALDHVLLFGPPGLGKT 81

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           TL+ ++A ELGVN R TSGPV+ K  DLAA+LTNLE  DVLFIDEIHRLS +VEEILYPA
Sbjct: 82  TLSHIIAAELGVNLRQTSGPVLEKPKDLAAILTNLERNDVLFIDEIHRLSPVVEEILYPA 141

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +ED+Q+D+M+GEGP+ARS+K+ L  FTLI ATTR G+LTNPL+DRFGI  RL FY +E+L
Sbjct: 142 LEDYQIDIMIGEGPAARSIKLELQPFTLIGATTRAGMLTNPLRDRFGIVARLEFYSVEEL 201

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             IV R A L  +        EIA RSRGTPRIA RLLRRVRD+A+V     I   IAD 
Sbjct: 202 ARIVTRSAGLLQVPTDTAGGLEIAKRSRGTPRIANRLLRRVRDYAQVKGDGRIDAAIADK 261

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E    IED+IEPY+IQQG
Sbjct: 262 ALAMLDVDPQGFDVMDRKLLEAVIHRFDGGPVGLDNVAAAIGEESGTIEDVIEPYLIQQG 321

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIP 332
           ++QRTPRGR+    A++HLG+  P
Sbjct: 322 YLQRTPRGRIATAAAYRHLGVLPP 345


>gi|261368083|ref|ZP_05980966.1| holliday junction DNA helicase RuvB [Subdoligranulum variabile DSM
           15176]
 gi|282570073|gb|EFB75608.1| holliday junction DNA helicase RuvB [Subdoligranulum variabile DSM
           15176]
          Length = 350

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 182/332 (54%), Positives = 239/332 (71%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           D   L+S +    DA+   LRP+TL+++ GQ +A  NL+V++ AA+ R E +DH+L  GP
Sbjct: 8   DPSRLVSPDALPADAEEISLRPKTLDDYVGQEKAKGNLRVYLRAAQQRGEPMDHILLYGP 67

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA +VA+E+GV  R TSGP I K GDLAALLTNL++ DVLFIDEIHRLS  VE
Sbjct: 68  PGLGKTTLAGIVAQEMGVQIRITSGPAIEKPGDLAALLTNLQEGDVLFIDEIHRLSRQVE 127

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPA+ED+ LD+M+G+GPSA+S++INL RFTLI ATTR G LT PL+DRFGI ++L  
Sbjct: 128 EVLYPALEDYALDIMIGKGPSAQSIRINLPRFTLIGATTRAGQLTGPLRDRFGILLKLEP 187

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  ++L  I+ R A + G+ +T+E A E+A  SRGTPRIA RLL+RVRDFA V    TI 
Sbjct: 188 YSPKELAQIITRSAGILGIPITEEGALELARCSRGTPRIANRLLKRVRDFATVQGDGTID 247

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            E A  A   + ID+MG D+LD   L  I   +GGGPVG+ET++A L E    +EDL EP
Sbjct: 248 EETAVEARKWMDIDEMGLDELDRSLLRAIIEMYGGGPVGLETLAAALGEESVTLEDLCEP 307

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           Y++Q G + RTPRGR +  +A++HL + +P R
Sbjct: 308 YLMQMGMLTRTPRGRCVTRLAYEHLHMAVPRR 339


>gi|94496109|ref|ZP_01302687.1| Holliday junction DNA helicase RuvB [Sphingomonas sp. SKA58]
 gi|94424288|gb|EAT09311.1| Holliday junction DNA helicase RuvB [Sphingomonas sp. SKA58]
          Length = 339

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 213/332 (64%), Positives = 265/332 (79%), Gaps = 1/332 (0%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M  + LL+     ED D + LRP++L+EF GQ  A  NL++FI+AAK+R +ALDHVLF G
Sbjct: 1   MTDDRLLTPARRPEDVD-AALRPKSLDEFVGQQAARENLRIFIQAAKSRGDALDHVLFFG 59

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLAQ+VA+E+GV FR+TSGPVIAK+GDLAALLTNL++ DVLF+DEIHRL+  V
Sbjct: 60  PPGLGKTTLAQIVAKEMGVGFRATSGPVIAKSGDLAALLTNLDEGDVLFVDEIHRLNPAV 119

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMED  LDLM+GEGPSARSV+I+L RFTL+ ATTR GLLT PL+DRFGIP+RL 
Sbjct: 120 EEVLYPAMEDRALDLMIGEGPSARSVRIDLPRFTLVGATTRQGLLTTPLRDRFGIPVRLQ 179

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY +E+L+ +V+R A L  L++T + A EIA RSRGTPRIAGRLLRRVRDFA VA A  +
Sbjct: 180 FYTVEELERVVRRAAHLLDLSITSDGAVEIARRSRGTPRIAGRLLRRVRDFANVAGAPAV 239

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
            R++AD+AL RL +D++G D +D RYL MIA  + GGPVG+ET++AGLSE RD IE++IE
Sbjct: 240 DRQVADSALQRLEVDQLGLDLMDRRYLMMIADIYRGGPVGVETLAAGLSEARDTIEEVIE 299

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           PY+IQ G I RT RGR L    W+HLG+  P 
Sbjct: 300 PYLIQLGLIARTARGRCLNGPGWKHLGLHPPQ 331


>gi|104783072|ref|YP_609570.1| Holliday junction DNA helicase RuvB [Pseudomonas entomophila L48]
 gi|123255381|sp|Q1I6E9|RUVB_PSEE4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|95112059|emb|CAK16786.1| Holliday junction helicase, subunit B [Pseudomonas entomophila L48]
          Length = 348

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 188/335 (56%), Positives = 248/335 (74%), Gaps = 1/335 (0%)

Query: 1   MMDREGLLSRN-VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L++ +   +E+     +RP  L+E+ GQ      + +FI+AA+ R E+LDH L 
Sbjct: 1   MIETDRLIAASGRDREEVQDRAIRPLRLDEYIGQPVVREQMALFIQAARGRNESLDHTLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A+E+GV+ +STSGP++ + GDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIIAQEMGVSVKSTSGPILERPGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMEDFQLD+M+GEGP+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDFQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY  +DL TIV R A + GL + D+ A EIA R+RGTPRIA RLLRRVRDFAEV    
Sbjct: 181 LEFYSNKDLATIVSRSAGILGLPMDDKGAFEIARRARGTPRIANRLLRRVRDFAEVRGKG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT+ +AD AL  L +D+ GFD  D R L  +   F GGPVG++ I+A + E R  IED+
Sbjct: 241 EITKAVADMALNLLDVDERGFDHSDRRLLLTMIEKFDGGPVGLDNIAAAIGEERHTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           +EPY+IQQG+I RTPRGR++   A+ H G++IP R
Sbjct: 301 LEPYLIQQGYIMRTPRGRVVTRHAYLHFGLNIPGR 335


>gi|83749322|ref|ZP_00946319.1| RuvB [Ralstonia solanacearum UW551]
 gi|207727945|ref|YP_002256339.1| holliday junction dna helicase ruvb protein [Ralstonia solanacearum
           MolK2]
 gi|207742351|ref|YP_002258743.1| holliday junction dna helicase ruvb protein [Ralstonia solanacearum
           IPO1609]
 gi|83724000|gb|EAP71181.1| RuvB [Ralstonia solanacearum UW551]
 gi|206591188|emb|CAQ56800.1| holliday junction dna helicase ruvb protein [Ralstonia solanacearum
           MolK2]
 gi|206593741|emb|CAQ60668.1| holliday junction dna helicase ruvb protein [Ralstonia solanacearum
           IPO1609]
          Length = 357

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 196/331 (59%), Positives = 242/331 (73%), Gaps = 2/331 (0%)

Query: 5   EGLLS--RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           E L+S       E+A    LRP+ L+E+ GQ +    L +F+ AAK R EALDHVL  GP
Sbjct: 15  ERLISASPASPNEEAFERALRPKLLDEYVGQEKVRGQLDIFMTAAKRRREALDHVLLFGP 74

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++ARE+GVN R TSGPV+ + GDLAALLTNLE  DVLFIDEIHRLS +VE
Sbjct: 75  PGLGKTTLAHIIAREMGVNLRQTSGPVLERPGDLAALLTNLEANDVLFIDEIHRLSPVVE 134

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILYPA+ED+Q+D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL F
Sbjct: 135 EILYPALEDYQIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEF 194

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y   +L  IV R A L    + ++ A EIA RSRGTPRIA RLLRRVRDFAEV     IT
Sbjct: 195 YTPSELSRIVTRSAGLLDARIAEDGALEIAKRSRGTPRIANRLLRRVRDFAEVKADGVIT 254

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           R +ADAAL  L +D +GFD +D + L  I   F GGPVGI+ ++A + E RD IED++EP
Sbjct: 255 RAVADAALAMLDVDAVGFDLMDRKLLEAILHKFNGGPVGIDNLAAAIGEERDTIEDVLEP 314

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           Y+IQQG++QRTPRGR+    A+QH G+  P 
Sbjct: 315 YLIQQGYLQRTPRGRVATASAYQHFGLGAPK 345


>gi|317128203|ref|YP_004094485.1| Holliday junction DNA helicase RuvB [Bacillus cellulosilyticus DSM
           2522]
 gi|315473151|gb|ADU29754.1| Holliday junction DNA helicase RuvB [Bacillus cellulosilyticus DSM
           2522]
          Length = 334

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 181/334 (54%), Positives = 239/334 (71%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MMD   +   +  QED +   LRP+TL ++ GQ    +NL VFIEAAK R E LDHVL  
Sbjct: 1   MMDDRLVSGESNQQEDWEEHSLRPQTLTQYIGQENVKNNLNVFIEAAKMREETLDHVLLY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTL+ ++A E+ V  R+TSGP I + GDLAA+LT LE  DVLFIDEIHRL+  
Sbjct: 61  GPPGLGKTTLSMIIANEMNVQLRTTSGPAIERPGDLAAILTALEPGDVLFIDEIHRLNRS 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTR G+L+ PL+DRFG+  RL
Sbjct: 121 VEEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLSAPLRDRFGVVSRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y  E+L  IV+R A +  + +  EAA EIA RSRGTPRIA RLLRRVRDFA+V    T
Sbjct: 181 QYYTHEELTEIVERTALVMNVEIDHEAAIEIARRSRGTPRIANRLLRRVRDFAQVKGDNT 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I  ++   AL  L +DK+G D++D + L  I   F GGPVG++TI+A + E    IED+ 
Sbjct: 241 IKLDVTQHALQLLQVDKLGLDEIDHKLLRNIVEKFRGGPVGLDTIAATIGEESHTIEDVY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           EPY++Q GF+QRTPRGR++    ++HL +++P +
Sbjct: 301 EPYLLQIGFLQRTPRGRMVTDDVYKHLQMEVPRK 334


>gi|91793238|ref|YP_562889.1| Holliday junction DNA helicase B [Shewanella denitrificans OS217]
 gi|123060936|sp|Q12N10|RUVB_SHEDO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|91715240|gb|ABE55166.1| Holliday junction DNA helicase RuvB [Shewanella denitrificans
           OS217]
          Length = 337

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 197/334 (58%), Positives = 255/334 (76%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+   V +Q++     +RP+ L+++TGQ +  + LK+FI+AA  R EALDH+L 
Sbjct: 1   MIEADRLIQPQVLAQDEHIDRAMRPKLLDDYTGQDDTRAQLKIFIQAAINRKEALDHMLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN +STSGPV+ KAGDLAALLTNL++ DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLAMIVANEMGVNIKSTSGPVLEKAGDLAALLTNLDEGDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+ RFGIP+R
Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGALTSPLRARFGIPLR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY ++DL TIV R AK+  LA+    A EIA RSRGTPRIA RLLRRVRD+AEV  A 
Sbjct: 181 LEFYNVKDLCTIVTRSAKVMELAIDAGGAHEIAKRSRGTPRIANRLLRRVRDYAEVKFAG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            +T ++A  AL  L +D+ GFD LD + L  I   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 EVTEDVAQQALDMLDVDQEGFDYLDRKLLLSIIDKFMGGPVGLDNLAAAIGEDRETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +EP++IQQGFIQRTPRGR++ P A+QH  I  P 
Sbjct: 301 LEPFLIQQGFIQRTPRGRIVTPRAYQHFNIITPD 334


>gi|331085083|ref|ZP_08334170.1| Holliday junction ATP-dependent DNA helicase ruvB [Lachnospiraceae
           bacterium 9_1_43BFAA]
 gi|330408783|gb|EGG88248.1| Holliday junction ATP-dependent DNA helicase ruvB [Lachnospiraceae
           bacterium 9_1_43BFAA]
          Length = 333

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 172/333 (51%), Positives = 241/333 (72%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M +  + + N+ ++    S LRP  L+++ GQ +A   LK++IEAAKAR E+LDHVLF G
Sbjct: 1   MAKRIITTENLEEDVKIESHLRPTLLKDYIGQEKAKETLKIYIEAAKARGESLDHVLFYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+ VN + TSGP I K G++AA+L NL++ DVLF+DEIHRL+  V
Sbjct: 61  PPGLGKTTLAGIIANEMEVNVKITSGPAIEKPGEMAAILNNLQEGDVLFVDEIHRLNRQV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMED+ +D+M+G+G  ARS++++L  FTL+ ATTR G+LT PL+DRFG+  RL 
Sbjct: 121 EEVLYPAMEDYVIDIMIGKGAGARSIRLDLPHFTLVGATTRAGMLTAPLRDRFGVVQRLE 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY  E+L+TI+ R A + G+ +  + A E+A RSRGTPR+A RLL+RVRDFA+V +   I
Sbjct: 181 FYTEEELRTIIMRSADVLGVEIDAKGALELAKRSRGTPRLANRLLKRVRDFAQVKYDGRI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T E+A+ AL  L +D+ G D +D   L  +   F GGPVG+ET++A + E    IED+ E
Sbjct: 241 TEEVANYALDLLDVDRYGLDHVDRNLLLAMIEKFQGGPVGLETLAASIGEDSGTIEDVCE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           PY+++ GFIQRTPRGR++   A+ HLGI   ++
Sbjct: 301 PYLLKNGFIQRTPRGRIVTDKAYAHLGISYKNQ 333


>gi|323706514|ref|ZP_08118073.1| Holliday junction DNA helicase RuvB [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323534144|gb|EGB23936.1| Holliday junction DNA helicase RuvB [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 331

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 180/330 (54%), Positives = 243/330 (73%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
            E +L++N + EDA    LRP+ L E+ GQ++    LK++IEAAK R+E LDHVL  GPP
Sbjct: 2   EERILTQNFTPEDASEYSLRPKRLSEYIGQMKIKEELKIYIEAAKMRSEPLDHVLLFGPP 61

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA +++ E+GV  R TSGP I +AGDLAA+LTNL++ D+LFIDEIHRL+  VEE
Sbjct: 62  GLGKTTLANIISNEMGVGIRITSGPAIERAGDLAAILTNLQENDILFIDEIHRLNRSVEE 121

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILYPAMEDF+LD+++G+GPSARS++++L  FTLI ATTR GL+T+PL+DRFG+ +RL FY
Sbjct: 122 ILYPAMEDFELDIIIGKGPSARSLRLDLPHFTLIGATTRAGLMTSPLRDRFGVIMRLEFY 181

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            +E+L  I++R + +  + + DEAA E+  RSRGTPRIA RLL+RVRDFA+V     I  
Sbjct: 182 SVEELSEIIKRSSAILNIGINDEAAYELGRRSRGTPRIANRLLKRVRDFAQVKGNGFIDF 241

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
            IA  AL  L +D MG + +D + L  I   F GGPVGI+TI+A + E  D IED+ EPY
Sbjct: 242 HIAKDALDMLGVDDMGLEHIDRKMLKSIIEKFSGGPVGIDTIAASIGEESDTIEDVYEPY 301

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           ++Q GF+ RTPRGR+   +A+++L   +P 
Sbjct: 302 LMQIGFLNRTPRGRIATKLAYEYLNYSLPE 331


>gi|315645786|ref|ZP_07898907.1| Holliday junction DNA helicase RuvB [Paenibacillus vortex V453]
 gi|315278547|gb|EFU41861.1| Holliday junction DNA helicase RuvB [Paenibacillus vortex V453]
          Length = 335

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 196/333 (58%), Positives = 248/333 (74%), Gaps = 2/333 (0%)

Query: 2   MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD + ++S N+  ++  + L LRPR L E+ GQ +   NLKV+IEAAK R EALDHVL  
Sbjct: 1   MD-DRIISANLMMDEQAVELSLRPRYLAEYIGQNQVKENLKVYIEAAKMRNEALDHVLLY 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A ELGVN R+TSGP I + GDLAALLTNL++ DVLFIDEIHRL   
Sbjct: 60  GPPGLGKTTLANIIANELGVNLRTTSGPAIERPGDLAALLTNLQEGDVLFIDEIHRLHRT 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE++YPAMEDF LD+M+G+GPSARSV+++L  FTLI ATTR GLL+ PL+DRFG+  RL
Sbjct: 120 VEEVMYPAMEDFALDIMIGKGPSARSVRLDLPPFTLIGATTRAGLLSAPLRDRFGVVSRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY +++L  IV R A L G+ +  +AA EIA+RSRGTPRIA RLL+RVRD+A+V     
Sbjct: 180 EFYTVDELSYIVSRNADLLGIEILGDAADEIALRSRGTPRIANRLLKRVRDYAQVRGDGM 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           IT  IA  AL  L ID MG D +D + L  + R+F GGPVG++TI+A + E    IED+ 
Sbjct: 240 ITPAIAQEALKMLQIDPMGLDFIDHKMLNAMIRSFRGGPVGLDTIAATIGEESQTIEDVY 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY++Q GF+QRTPRGR++ P A+QHLGI  P 
Sbjct: 300 EPYLLQIGFLQRTPRGRVVTPTAYQHLGIPFPE 332


>gi|294635835|ref|ZP_06714290.1| holliday junction DNA helicase RuvB [Edwardsiella tarda ATCC 23685]
 gi|291090807|gb|EFE23368.1| holliday junction DNA helicase RuvB [Edwardsiella tarda ATCC 23685]
          Length = 334

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 191/331 (57%), Positives = 251/331 (75%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSR-NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S  + S+E+     +RP++L ++ GQ +    +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRLISAGSQSEEEFLDRAIRPKSLADYVGQPQVREQMEIFIKAAKLRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTL+ ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLVGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IV R A+  GL++T+E A EIA RSRGTPRIA RLLRRVRDFAEV    
Sbjct: 181 LEFYQVADLQHIVGRSAQCLGLSLTEEGALEIARRSRGTPRIANRLLRRVRDFAEVCADG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I   +A  AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 HIDGTVAAQALNMLDVDAAGFDYMDRKLLLAVIDKFMGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           +EPY+IQQGFIQRTPRGR+    A++H GI+
Sbjct: 301 LEPYLIQQGFIQRTPRGRIATGHAYRHFGIE 331


>gi|330823178|ref|YP_004386481.1| Holliday junction ATP-dependent DNA helicase ruvB [Alicycliphilus
           denitrificans K601]
 gi|329308550|gb|AEB82965.1| Holliday junction ATP-dependent DNA helicase ruvB [Alicycliphilus
           denitrificans K601]
          Length = 375

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 191/332 (57%), Positives = 242/332 (72%), Gaps = 2/332 (0%)

Query: 4   REGLLS--RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           RE ++S      QE+A    LRP+ L+E+ GQ +A   L++FI AA+ R+EALDHVL  G
Sbjct: 36  RERMVSAAPASPQEEALERALRPKLLQEYVGQAKAREQLEIFIGAARKRSEALDHVLLFG 95

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTL+ ++A ELGVN R TSGPV+ K  DLAALLTNLE  DVLFIDEIHRLS +V
Sbjct: 96  PPGLGKTTLSHIIAAELGVNLRQTSGPVLEKPKDLAALLTNLERNDVLFIDEIHRLSPVV 155

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILYPA+ED+Q+D+M+GEGP+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  RL 
Sbjct: 156 EEILYPALEDYQIDIMIGEGPAARSIKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLE 215

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY  E+L  IV R A L G  + D    EIA RSRGTPRIA RLLRRVRD+A+V     I
Sbjct: 216 FYTPEELALIVMRSASLLGTPIDDAGGAEIARRSRGTPRIANRLLRRVRDYADVKGTGRI 275

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T ++A+ AL  L +D  GFD +D + L  +   F GGPVG++ I+A + E    IED+IE
Sbjct: 276 TLDMANRALTLLDVDPQGFDVMDRKLLEAVVHRFDGGPVGLDNIAASIGEESGTIEDVIE 335

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           PY+IQQG++QRTPRGR+    A++HLG+  P 
Sbjct: 336 PYLIQQGYLQRTPRGRVATLAAYRHLGVAPPR 367


>gi|123442634|ref|YP_001006611.1| Holliday junction DNA helicase RuvB [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|332161519|ref|YP_004298096.1| Holliday junction DNA helicase RuvB [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|166231570|sp|A1JRJ5|RUVB_YERE8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|122089595|emb|CAL12444.1| Holliday junction DNA helicase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|318605501|emb|CBY26999.1| holliday junction DNA helicase RuvB [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325665749|gb|ADZ42393.1| Holliday junction DNA helicase RuvB [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330860794|emb|CBX71081.1| holliday junction ATP-dependent DNA helicase ruvB [Yersinia
           enterocolitica W22703]
          Length = 334

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 193/331 (58%), Positives = 246/331 (74%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S  V S E++    +RP+ L E+ GQ      +++FI+AAK R +ALDHVL 
Sbjct: 1   MIEADRLISAGVISDEESIDRAIRPKLLAEYVGQPHVREQMEIFIQAAKQRGDALDHVLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IV R AK  GL +T E A ++A RSRGTPRI  RLLRRVRDFAEV    
Sbjct: 181 LEFYQVADLEHIVSRSAKCLGLELTPEGAHQLARRSRGTPRITNRLLRRVRDFAEVRADG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  ++A  AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 AINGDVAMKALDMLNVDAEGFDFMDRKLLLAVIDKFMGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           +EPY+IQQGFIQRTPRGR+    A++H GI 
Sbjct: 301 LEPYLIQQGFIQRTPRGRIATNHAYKHFGIT 331


>gi|238751591|ref|ZP_04613081.1| Holliday junction DNA helicase RuvB [Yersinia rohdei ATCC 43380]
 gi|238710153|gb|EEQ02381.1| Holliday junction DNA helicase RuvB [Yersinia rohdei ATCC 43380]
          Length = 334

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 193/331 (58%), Positives = 246/331 (74%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S  V S E++    +RP+ L E+ GQ      +++FI+AAK R +ALDHVL 
Sbjct: 1   MIEADRLISAGVISDEESIDRAIRPKMLAEYVGQPHVREQMEIFIQAAKQRGDALDHVLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IV R AK  GL +T E A ++A RSRGTPRI  RLLRRVRDFAEV    
Sbjct: 181 LEFYQVADLEHIVSRSAKCLGLELTPEGAHQLARRSRGTPRITNRLLRRVRDFAEVRADG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  ++A  AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 AINGDVAMKALDMLNVDAEGFDFMDRKLLLAVIDKFMGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           +EPY+IQQGFIQRTPRGR+    A++H GI 
Sbjct: 301 LEPYLIQQGFIQRTPRGRIATNHAYKHFGIT 331


>gi|330721243|gb|EGG99342.1| Holliday junction DNA helicase RuvB [gamma proteobacterium
           IMCC2047]
          Length = 337

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 192/333 (57%), Positives = 249/333 (74%), Gaps = 2/333 (0%)

Query: 1   MMDREGLLS--RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M++ + L+S     + E+     +RP TL E+ GQ      +++FI AA+ RAEALDHVL
Sbjct: 1   MIESDRLISAQPQATAEERIDYAIRPSTLSEYVGQDAVKEQMEIFIHAARGRAEALDHVL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA ++A+E+GV+ +STSGPV+ KAGDLAA+LTNLE+ DVLFIDEIHRLS
Sbjct: 61  IFGPPGLGKTTLANIIAQEMGVSIKSTSGPVLEKAGDLAAMLTNLEEGDVLFIDEIHRLS 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
             VEE+LYPAMED+QLD+M+GEGP+ARS+K++L RFTL+ ATTR GLLT+PL+DRFGI  
Sbjct: 121 PAVEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPRFTLVGATTRAGLLTSPLRDRFGIVQ 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           RL FY + DL  IV R   L  + V +E A EIA RSRGTPRIA RLLRRVRD+A+V   
Sbjct: 181 RLEFYNVADLTHIVSRSCGLLSVPVNEEGAAEIARRSRGTPRIANRLLRRVRDYAQVKGD 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             I ++IADAAL  L +D +GFD +D R L  +   F GGPVG+++++A +SE RD IED
Sbjct: 241 GAIGKDIADAALGMLDVDDVGFDNMDRRLLLAMIEKFDGGPVGVDSLAAAISEERDTIED 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           ++EPY+IQQG+I RTPRGR++   A+ H G+  
Sbjct: 301 VLEPYLIQQGYILRTPRGRIVTKHAYLHFGLTP 333


>gi|300705141|ref|YP_003746744.1| ATP-dependent DNA helicase subunit B [Ralstonia solanacearum
           CFBP2957]
 gi|299072805|emb|CBJ44160.1| ATP-dependent DNA helicase, subunit B of RuvABC Holliday junction
           resolvasome [Ralstonia solanacearum CFBP2957]
          Length = 357

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 196/331 (59%), Positives = 242/331 (73%), Gaps = 2/331 (0%)

Query: 5   EGLLS--RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           E L+S       E+A    LRP+ L+E+ GQ +    L +F+ AAK R EALDHVL  GP
Sbjct: 15  ERLISASPASPNEEAFERALRPKLLDEYVGQEKVRGQLDIFMTAAKRRREALDHVLLFGP 74

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++ARE+GVN R TSGPV+ + GDLAALLTNLE  DVLFIDEIHRLS +VE
Sbjct: 75  PGLGKTTLAHIIAREMGVNLRQTSGPVLERPGDLAALLTNLEANDVLFIDEIHRLSPVVE 134

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILYPA+ED+Q+D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL F
Sbjct: 135 EILYPALEDYQIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEF 194

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y   +L  IV R A L    + ++ A EIA RSRGTPRIA RLLRRVRDFAEV     IT
Sbjct: 195 YTPSELSRIVTRSAGLLDARIAEDGALEIAKRSRGTPRIANRLLRRVRDFAEVKADGVIT 254

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           R +ADAAL  L +D +GFD +D + L  I   F GGPVGI+ ++A + E RD IED++EP
Sbjct: 255 RAVADAALAMLDVDAVGFDLMDRKLLEAILHKFNGGPVGIDNLAAAIGEERDTIEDVLEP 314

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           Y+IQQG++QRTPRGR+    A+QH G+  P 
Sbjct: 315 YLIQQGYLQRTPRGRVATASAYQHFGLGAPK 345


>gi|294788244|ref|ZP_06753487.1| holliday junction DNA helicase RuvB [Simonsiella muelleri ATCC
           29453]
 gi|294483675|gb|EFG31359.1| holliday junction DNA helicase RuvB [Simonsiella muelleri ATCC
           29453]
          Length = 344

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 199/340 (58%), Positives = 254/340 (74%), Gaps = 10/340 (2%)

Query: 1   MMDREGLLSRNVSQ----------EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKAR 50
           M+  + ++S+ V +          E+     LRP+TL ++ GQ +A + L +FI+AAK R
Sbjct: 1   MLQTDNIISQAVPRLITPQSQSKLEEQLERALRPKTLADYIGQDKAKTQLAIFIQAAKNR 60

Query: 51  AEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLF 110
            EALDH L  GPPGLGKTTLA ++ARELGVN R TSGPV+ +AGDLAALLTNLE  DVLF
Sbjct: 61  GEALDHTLLFGPPGLGKTTLANIMARELGVNLRQTSGPVLERAGDLAALLTNLEPHDVLF 120

Query: 111 IDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           IDEIHRLS +VEEILYPAMED+QLD+M+GEGP+ARSVKI+L  FTL+ ATTR G+LTNPL
Sbjct: 121 IDEIHRLSPVVEEILYPAMEDYQLDIMIGEGPAARSVKIDLPPFTLVGATTRAGMLTNPL 180

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
           +DRFGI  RL FY+ +DL TIV R A+L  + + ++ A EIA RSRGTPRIA RLLRRVR
Sbjct: 181 RDRFGIVSRLEFYKNKDLATIVARSAQLLNMDLDEQGAWEIACRSRGTPRIANRLLRRVR 240

Query: 231 DFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
           D+AEV H+ +I  +IADAAL  L +DK+G D +D ++L  +   F GGPVG++ ++A + 
Sbjct: 241 DYAEVLHSGSIDAKIADAALSMLDVDKIGLDMMDRKFLEAVLHKFAGGPVGLDNVAAAIG 300

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           E  D IED+IEPY+IQQGF+QRTPRGR+    A+ H G+ 
Sbjct: 301 ESTDTIEDVIEPYLIQQGFLQRTPRGRMATDAAYSHFGLQ 340


>gi|186477305|ref|YP_001858775.1| Holliday junction DNA helicase RuvB [Burkholderia phymatum STM815]
 gi|184193764|gb|ACC71729.1| Holliday junction DNA helicase RuvB [Burkholderia phymatum STM815]
          Length = 363

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 196/331 (59%), Positives = 247/331 (74%), Gaps = 2/331 (0%)

Query: 5   EGLLSRNV--SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           E +++       E+A    LRPR L+E+ GQ +    L++FIEAAK R+E+LDHVL  GP
Sbjct: 19  ERIIAATPVSPNEEAFERALRPRQLDEYVGQEKVRGQLEIFIEAAKRRSESLDHVLLFGP 78

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++ARE+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VE
Sbjct: 79  PGLGKTTLAHIIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVE 138

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILYPA+ED+Q+D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL F
Sbjct: 139 EILYPALEDYQIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEF 198

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  E+L  IV R A L G  +  E A EIA RSRGTPRIA RLLRRVRD+AEV     IT
Sbjct: 199 YNAEELARIVSRSASLLGAQIHPEGALEIAKRSRGTPRIANRLLRRVRDYAEVKADGNIT 258

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            ++ADAAL  L +D +GFD +D + L  I   F GGPVG++ ++A + E RD IED++EP
Sbjct: 259 AKVADAALKMLDVDPVGFDLMDRKLLEAILHKFDGGPVGVDNLAAAIGEERDTIEDVLEP 318

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           Y+IQQGF+QRTPRGR+   + ++H G+  P 
Sbjct: 319 YLIQQGFLQRTPRGRVATLLTYRHFGLAAPD 349


>gi|261343862|ref|ZP_05971507.1| holliday junction DNA helicase RuvB [Providencia rustigianii DSM
           4541]
 gi|282568249|gb|EFB73784.1| holliday junction DNA helicase RuvB [Providencia rustigianii DSM
           4541]
          Length = 336

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 195/335 (58%), Positives = 252/335 (75%), Gaps = 2/335 (0%)

Query: 1   MMDREGLLSRNV--SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M++ + L++  V  S+E+A    +RP+ L E+ GQ +    +++FI+AAK R +ALDH+L
Sbjct: 1   MIEADRLITAEVLHSEEEAIDRAIRPKLLAEYIGQPQVKDQMEIFIQAAKMRGDALDHLL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA +VA ELGVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS
Sbjct: 61  IFGPPGLGKTTLAGIVANELGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLS 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            +VEEILYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  
Sbjct: 121 PVVEEILYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQ 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           RL FY+++DL+ IV+R A+  GL +T+E A ++AMRSRGTPRI  RLLRRVRDFA+V   
Sbjct: 181 RLEFYQVDDLQHIVKRSAQYMGLEITEEGALQVAMRSRGTPRITNRLLRRVRDFAQVKGD 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
            TI   +A+ AL  L +D  GFD LD + L  I   F GGPVG++ ++A + E R+ IED
Sbjct: 241 GTIDEAMANKALDMLNVDAAGFDYLDRKLLVAIIDKFMGGPVGVDNLAAAIGEERETIED 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           ++EPY+IQQGFIQRTPRGR+    A+ H G+    
Sbjct: 301 VLEPYLIQQGFIQRTPRGRMATAHAYSHFGLKPKE 335


>gi|154482943|ref|ZP_02025391.1| hypothetical protein EUBVEN_00641 [Eubacterium ventriosum ATCC
           27560]
 gi|149736227|gb|EDM52113.1| hypothetical protein EUBVEN_00641 [Eubacterium ventriosum ATCC
           27560]
          Length = 333

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 170/326 (52%), Positives = 242/326 (74%), Gaps = 1/326 (0%)

Query: 6   GLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
            ++  +++ ED  I   LRP +L+++ GQ +A +NLK+FIEAAK+R E LDHVLF GPPG
Sbjct: 4   RIIQTDLAGEDIVIEKGLRPESLDQYVGQSKAKNNLKIFIEAAKSRNEPLDHVLFYGPPG 63

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLA ++A E+GV+ + TSGP I K G++AA+L NL + D+LFIDEIHRL+  VEE+
Sbjct: 64  LGKTTLATIIAHEMGVHIKVTSGPAIEKPGEMAAILNNLAENDILFIDEIHRLNRQVEEV 123

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPAMED+ +D+M+G+G  ARS++++L +FTL+ ATTR GLLT PL+DRFG+  +L FY 
Sbjct: 124 LYPAMEDYSIDIMIGKGQGARSIRLDLPKFTLVGATTRAGLLTAPLRDRFGVINKLEFYT 183

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +++LK I+ R A L  + + ++ A E+A RSRGTPR+A RLL+RVRDFA+V +   IT +
Sbjct: 184 VDELKQIIIRSAGLLNVEIDEKGATELARRSRGTPRLANRLLKRVRDFAQVKYDGVITED 243

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +A+ AL  L +DK+G D+ D   L  +   F GGPVG++T++A L E    +ED+ EPY+
Sbjct: 244 VANLALDLLEVDKLGLDKGDRSILETMIDKFDGGPVGLDTLAAALGEDSGTLEDVYEPYL 303

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGID 330
           IQ G +QRTPRGR+   +A++HLG+ 
Sbjct: 304 IQNGLLQRTPRGRIATRLAYEHLGVP 329


>gi|332534226|ref|ZP_08410071.1| holliday junction DNA helicase RuvB [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332036306|gb|EGI72777.1| holliday junction DNA helicase RuvB [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 335

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 189/332 (56%), Positives = 244/332 (73%), Gaps = 1/332 (0%)

Query: 1   MMDREGLLSR-NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+     + ED+    +RP+ L ++ GQ      +++FIEAA+ R EALDH+L 
Sbjct: 1   MIEADRLIDATEKTNEDSIDRAIRPKLLADYRGQPHVKQQMEIFIEAARTRGEALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA EL V+ ++TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANELHVSIKTTSGPVLEKAGDLAALLTNLEEGDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEEILYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 QVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPAFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY +EDL  IV R A   GL + D+ A EIA RSRGTPRIA RLLRRVRD+ +V    
Sbjct: 181 LEFYSVEDLSHIVGRSAHYLGLEMCDDGATEIAQRSRGTPRIANRLLRRVRDYTQVKSDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           T+  ++A  AL  + +DK GFD +D +YL  I   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 TVNADVAKQALDMIDVDKSGFDYMDRKYLLAIIEKFMGGPVGLDNVAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           IEP++IQQGFIQRTPRGR++   A+ H G+  
Sbjct: 301 IEPFLIQQGFIQRTPRGRIVSDSAYHHFGLLP 332


>gi|212635162|ref|YP_002311687.1| Holliday junction DNA helicase RuvB [Shewanella piezotolerans WP3]
 gi|226725464|sp|B8CNY1|RUVB_SHEPW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|212556646|gb|ACJ29100.1| Holliday junction DNA helicase RuvB [Shewanella piezotolerans WP3]
          Length = 336

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 195/334 (58%), Positives = 254/334 (76%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+   V + D  +   +RP+ L+E+TGQ +  + LK+FIEAA+ R EALDH+L 
Sbjct: 1   MIEADRLIQPQVIEPDEVVDRAMRPKLLDEYTGQDDTRAQLKIFIEAAQKRGEALDHMLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN +STSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS 
Sbjct: 61  YGPPGLGKTTLAMIVANEMGVNIKSTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ ATT+ G LT+PL+ RFGIP+R
Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTQAGSLTSPLRARFGIPLR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY I+DL TIV R AK+  L + +E A EIA RSRGTPRIA RLLRRVRDFAEV H+ 
Sbjct: 181 LEFYNIKDLSTIVIRSAKVMELEIDEEGAIEIARRSRGTPRIANRLLRRVRDFAEVKHSG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            +T+ +A+ AL  L +D  GFD +D + L  I   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 AVTKVVAELALDMLDVDAEGFDYMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +EP++IQQGF+QRTPRGR+    A+ H  +  P 
Sbjct: 301 LEPFLIQQGFVQRTPRGRIATQRAYNHFNLIQPE 334


>gi|330815559|ref|YP_004359264.1| Holliday junction DNA helicase RuvB [Burkholderia gladioli BSR3]
 gi|327367952|gb|AEA59308.1| Holliday junction DNA helicase RuvB [Burkholderia gladioli BSR3]
          Length = 355

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 197/340 (57%), Positives = 249/340 (73%), Gaps = 7/340 (2%)

Query: 1   MMDREGLL-------SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEA 53
           M++ + L        +   S E+A    LRPR L+E+ GQ +    L++FIEAAK R+EA
Sbjct: 1   MIETDKLAGERVIAATPASSHEEAFERALRPRQLDEYVGQEKVRGQLEIFIEAAKRRSEA 60

Query: 54  LDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDE 113
           LDHVL  GPPGLGKTTLA ++ARE+GVN R TSGPV+ + GDLAALLTNLE  DVLFIDE
Sbjct: 61  LDHVLLFGPPGLGKTTLAHIIAREMGVNLRQTSGPVLERPGDLAALLTNLEANDVLFIDE 120

Query: 114 IHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           IHRLS +VEEILYPA+ED+Q+D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DR
Sbjct: 121 IHRLSPVVEEILYPALEDYQIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDR 180

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
           FGI  RL FY+   L  IVQR A L    +  + A EIA RSRGTPRIA RLLRRVRD+A
Sbjct: 181 FGIVARLEFYDAGQLSRIVQRSASLLQARIDPQGALEIARRSRGTPRIANRLLRRVRDYA 240

Query: 234 EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
           EV     IT E+ADAAL  L +D +GFD +D + L  I   F GGPVG++ ++A + E R
Sbjct: 241 EVKADGAITAEVADAALAMLDVDPVGFDLMDRKLLEAILHKFDGGPVGVDNLAAAIGEER 300

Query: 294 DAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           D IED++EPY+IQQGF+QRTPRGR+   + ++H G+ +P 
Sbjct: 301 DTIEDVLEPYLIQQGFLQRTPRGRVATLLTYRHFGLPVPD 340


>gi|217973220|ref|YP_002357971.1| Holliday junction DNA helicase RuvB [Shewanella baltica OS223]
 gi|304408863|ref|ZP_07390484.1| Holliday junction DNA helicase RuvB [Shewanella baltica OS183]
 gi|307302866|ref|ZP_07582621.1| Holliday junction DNA helicase RuvB [Shewanella baltica BA175]
 gi|254767439|sp|B8EA75|RUVB_SHEB2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|217498355|gb|ACK46548.1| Holliday junction DNA helicase RuvB [Shewanella baltica OS223]
 gi|304352684|gb|EFM17081.1| Holliday junction DNA helicase RuvB [Shewanella baltica OS183]
 gi|306913226|gb|EFN43648.1| Holliday junction DNA helicase RuvB [Shewanella baltica BA175]
          Length = 334

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 195/334 (58%), Positives = 253/334 (75%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+   +  Q+++    +RP+ L+E+TGQ +  + LKVFI+AAK R EALDH+L 
Sbjct: 1   MIEADRLIQPQIQAQDESIDRAMRPKMLDEYTGQDDTRAQLKVFIQAAKNRNEALDHMLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN +STSGPV+ KAGDLAALLTNLE  DVLFIDEIHRLS 
Sbjct: 61  YGPPGLGKTTLAMIVANEMGVNIKSTSGPVLEKAGDLAALLTNLESGDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ ATTR G LT+PL+ RFGIP+R
Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGALTSPLRARFGIPLR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY I+DL TIV R A++  L +  E A EIA RSRGTPRIA RLLRRVRD+A+V H  
Sbjct: 181 LEFYNIKDLSTIVTRSAQVMELDIDAEGAFEIARRSRGTPRIANRLLRRVRDYAQVKHDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            +T+ +A+ AL  L +D  GFD +D + L  I   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 AVTKFVAEHALDLLDVDSEGFDYMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +EP++IQQGFIQRTPRGR+    A+QH  +  P 
Sbjct: 301 LEPFLIQQGFIQRTPRGRIATARAYQHFELIKPE 334


>gi|88705606|ref|ZP_01103316.1| Holliday junction DNA helicase ruvB [Congregibacter litoralis KT71]
 gi|88700119|gb|EAQ97228.1| Holliday junction DNA helicase ruvB [Congregibacter litoralis KT71]
          Length = 356

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 187/334 (55%), Positives = 250/334 (74%), Gaps = 2/334 (0%)

Query: 1   MMDREGLLSRNV--SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M++ + L++     + EDA    +RP++L E+ GQ  A   +++F+ AAK R E LDH L
Sbjct: 1   MIETDRLIAPEPVGTVEDAQDRAVRPKSLGEYIGQPVAREQMEIFLAAAKGREEPLDHTL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA ++A E+GV+ ++TSGPV+ KAGD+AAL+TNLE  DVLFIDEIHRLS
Sbjct: 61  IFGPPGLGKTTLASIIANEMGVSLKTTSGPVLEKAGDIAALMTNLEPGDVLFIDEIHRLS 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
             VEEILYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ ATTR GLLT+PL+DRFGI  
Sbjct: 121 PFVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGLLTSPLRDRFGIVQ 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           RL FY +EDL  IV R A++  + + D+ A EIA RSRGTPRIA RLLRRVRD+AEV   
Sbjct: 181 RLEFYGVEDLAVIVARSARILEIPMDDDGAREIARRSRGTPRIANRLLRRVRDYAEVKGD 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             +  +IAD AL  L++D  GFD LD R L  +   F GGPVG+++++A +SE R  IED
Sbjct: 241 GMVNADIADRALDLLSVDAKGFDHLDRRLLLAMIEKFDGGPVGVDSLAAAISEERGTIED 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++EP++IQQG++ RTPRGR++  +A+QH G+ +P
Sbjct: 301 VLEPFLIQQGYMIRTPRGRMVTRLAYQHFGVPMP 334


>gi|239827858|ref|YP_002950482.1| Holliday junction DNA helicase RuvB [Geobacillus sp. WCH70]
 gi|259495669|sp|C5D5E8|RUVB_GEOSW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|239808151|gb|ACS25216.1| Holliday junction DNA helicase RuvB [Geobacillus sp. WCH70]
          Length = 333

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 187/332 (56%), Positives = 244/332 (73%), Gaps = 1/332 (0%)

Query: 4   REGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
            E L+S +V +ED  +   LRP+ L E+ GQ +   NLKVFIEAAK R E LDHVL  GP
Sbjct: 2   EERLVSGDVHREDVSLEYSLRPKFLHEYIGQDKVKDNLKVFIEAAKMREETLDHVLLYGP 61

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++A E+GV+ R+TSGP I + GDLAA+LT+LE  DVLFIDEIHRL   VE
Sbjct: 62  PGLGKTTLAAIIANEMGVHLRTTSGPAIERPGDLAAILTSLEPGDVLFIDEIHRLHRSVE 121

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMED+ LD+++G+G +ARS++I+L  FTL+ ATTR G L+ PL+DRFG+  RL +
Sbjct: 122 EVLYPAMEDYCLDIIIGKGQTARSIRIDLPPFTLVGATTRAGALSAPLRDRFGVISRLEY 181

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  E L  IV R A++  + +T EAA EIA RSRGTPRIA RLLRRVRDFA+V    TIT
Sbjct: 182 YTTEHLTQIVMRTAEILHVDITAEAAVEIARRSRGTPRIANRLLRRVRDFAQVRGDGTIT 241

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             +A  AL  L +D++G D +D + +  I   FGGGPVGI+TI+A + E    IED+ EP
Sbjct: 242 FLLAKEALELLQVDRLGLDHIDHKLIKAIMEKFGGGPVGIDTIAATIGEEAQTIEDVYEP 301

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           Y++Q GF+QRTPRGR++ PIA++H G+++P +
Sbjct: 302 YLLQIGFLQRTPRGRIVTPIAYEHFGMEVPKQ 333


>gi|238898993|ref|YP_002924675.1| Holliday junction helicase, subunit B [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
 gi|259495670|sp|C4K7I4|RUVB_HAMD5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|229466753|gb|ACQ68527.1| Holliday junction helicase, subunit B [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
          Length = 333

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 190/329 (57%), Positives = 242/329 (73%), Gaps = 2/329 (0%)

Query: 1   MMDREGLLSRNVSQEDADI--SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M++ + L+S +V  E+  +    +RP+ L+E+ GQ      +++FI+AAK R +ALDH+L
Sbjct: 1   MIEIDRLVSTDVLNENEALVDRAIRPKRLDEYVGQSHVRDQMQIFIQAAKQRGDALDHLL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAALLT+LE RD LFIDEIHRLS
Sbjct: 61  IFGPPGLGKTTLANIVAHEMGVNLRTTSGPVLEKAGDLAALLTHLEPRDALFIDEIHRLS 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            +VEEILYPAMED+QLD+M+GEGP ARS+K++L  FTLI ATTR G LT+PL+DRFGI  
Sbjct: 121 PVVEEILYPAMEDYQLDIMIGEGPGARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQ 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           RL FY + DL+ IV R A+   L +T   A ++A+RSRGTPRI  RLLRRVRDFAEV   
Sbjct: 181 RLEFYSVPDLEHIVSRSARCLQLPLTKNGAHQLALRSRGTPRIINRLLRRVRDFAEVKGE 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             I  EIA  AL  L +DK G D +D + L  I   F GGPVG++ ++A + E R+ IED
Sbjct: 241 GKINTEIAIKALEMLNVDKEGLDYMDSKLLLAIIEKFQGGPVGLDNLAAAIGEERETIED 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHL 327
           ++EPY+IQQGFIQRTPRGR+    A+QH 
Sbjct: 301 VLEPYLIQQGFIQRTPRGRIATQHAYQHF 329


>gi|148825409|ref|YP_001290162.1| Holliday junction DNA helicase RuvB [Haemophilus influenzae PittEE]
 gi|166231497|sp|A5UAH8|RUVB_HAEIE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|148715569|gb|ABQ97779.1| Holliday junction DNA helicase RuvB [Haemophilus influenzae PittEE]
          Length = 335

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 183/331 (55%), Positives = 243/331 (73%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + ++S      ED     +RP+ L ++ GQ +    + +FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRIISGQAKVDEDVIDRAIRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            +EE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ ATTR G LT+PL+DRFGI  R
Sbjct: 121 AIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY +EDL +IV R A    L +  +AA E+A RSRGTPRIA RLLRRVRD+A+V +  
Sbjct: 181 LEFYSVEDLTSIVARSAGCLNLELEQQAAFEVARRSRGTPRIANRLLRRVRDYADVRNGG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I+ ++A  AL  L +D  GFD LD + L+ +   F GGPVG++ ++A + E RD IED+
Sbjct: 241 VISVDVAKQALSMLDVDDAGFDYLDRKLLSAVIERFDGGPVGLDNLAAAIGEERDTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           +EPY+IQQGF+QRTPRGR+     ++H G+ 
Sbjct: 301 LEPYLIQQGFLQRTPRGRIATSKTYRHFGLQ 331


>gi|73540189|ref|YP_294709.1| Holliday junction DNA helicase B [Ralstonia eutropha JMP134]
 gi|97190244|sp|Q475R8|RUVB_RALEJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|72117602|gb|AAZ59865.1| Holliday junction DNA helicase subunit RuvB [Ralstonia eutropha
           JMP134]
          Length = 352

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 195/331 (58%), Positives = 248/331 (74%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           DR    +   S+E+A    LRP+ L+E+ GQ +    L +F+ AA+ R EALDHVL  GP
Sbjct: 11  DRVISATPASSREEAFERALRPKLLDEYVGQEKVRGQLDIFMHAARNRREALDHVLLFGP 70

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++ARE+GVN R TSGPV+ + GDLAALLTNLE  DVLFIDEIHRLS +VE
Sbjct: 71  PGLGKTTLAHIIAREMGVNLRQTSGPVLERPGDLAALLTNLEANDVLFIDEIHRLSPVVE 130

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILYPA+ED+Q+D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL F
Sbjct: 131 EILYPALEDYQIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEF 190

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  E+L  IV R A+L G  +    + EIA R+RGTPRIA RLLRRVRD+AEV    TIT
Sbjct: 191 YTAEELARIVTRSAQLLGAHIDPLGSLEIARRARGTPRIANRLLRRVRDYAEVKGDGTIT 250

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           REIADAAL  L +D++GFD +D + L  +   FGGGPVG++ ++A + E RD IED++EP
Sbjct: 251 REIADAALAMLDVDRVGFDLMDRKLLEAVLHKFGGGPVGVDNLAAAIGEERDTIEDVLEP 310

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           Y+IQQG++QRTPRGR+    A++H G+  P 
Sbjct: 311 YLIQQGYLQRTPRGRVATAAAYRHFGLASPQ 341


>gi|167770543|ref|ZP_02442596.1| hypothetical protein ANACOL_01889 [Anaerotruncus colihominis DSM
           17241]
 gi|167667138|gb|EDS11268.1| hypothetical protein ANACOL_01889 [Anaerotruncus colihominis DSM
           17241]
          Length = 346

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 184/333 (55%), Positives = 238/333 (71%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M     +++      D+DI + LRP+TL E+ GQ +   N+++FI AAK R E LDHVL 
Sbjct: 6   MDFENRIMAPESIAGDSDIEVTLRPKTLAEYIGQEKVKENMRIFISAAKGRGEPLDHVLL 65

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTL+ ++A E+GVN R TSGP I K GDLAALLTNL   D+LFIDEIHRLS 
Sbjct: 66  YGPPGLGKTTLSNIIANEMGVNIRITSGPAIEKPGDLAALLTNLAPNDILFIDEIHRLSR 125

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEE+LYPAMEDF LD+++G+GPSARS++I+L  FTL+ ATTR G LT+PL+DRFG+  R
Sbjct: 126 AVEEVLYPAMEDFALDIIIGKGPSARSIRIDLPHFTLVGATTRAGQLTSPLRDRFGVIQR 185

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L  Y  ++L+TI+ R A + G+    + A E+A RSRGTPR+A RLL+RVRDFAEV    
Sbjct: 186 LELYTADELQTIILRSAGILGVMCDPKGAYELARRSRGTPRVANRLLKRVRDFAEVMGNG 245

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT EIA  AL R+ IDK+G D +D R L  I   +GGGPVG+ET++A L E    +ED+
Sbjct: 246 RITEEIAAIALDRMEIDKLGLDAVDRRMLETIIHGYGGGPVGLETLAAALGEEAVTLEDV 305

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
            EP+++Q GF+ RTPRGR +  +A+ HLGI  P
Sbjct: 306 CEPFLMQLGFLARTPRGRCVTALAYSHLGIKTP 338


>gi|82703832|ref|YP_413398.1| Holliday junction DNA helicase B [Nitrosospira multiformis ATCC
           25196]
 gi|97190171|sp|Q2Y5G5|RUVB_NITMU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|82411897|gb|ABB76006.1| Holliday junction DNA helicase subunit RuvB [Nitrosospira
           multiformis ATCC 25196]
          Length = 347

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 193/335 (57%), Positives = 250/335 (74%), Gaps = 2/335 (0%)

Query: 1   MMDREGLLSRNVS--QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M++ + L++      +E+     LRP+ L E+ GQ +    L++FIEAA+ R EALDHVL
Sbjct: 1   MIETDRLITPAPLSLKEEDLERALRPKHLAEYIGQEKIRGQLQIFIEAARRRREALDHVL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA +VA+E+GV  R TSGPV+ + GDLAALLTNLE  DVLFIDEIHRLS
Sbjct: 61  LFGPPGLGKTTLAHIVAKEMGVGLRQTSGPVLERPGDLAALLTNLEPNDVLFIDEIHRLS 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            +VEEILYPA+ED+QLD+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  
Sbjct: 121 PVVEEILYPALEDYQLDIMIGEGPAARSVKLDLPPFTLVGATTRAGMLTNPLRDRFGIIS 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           RL FY +E+L  IV R A L G  ++ + A EIA RSRGTPR+  RLLRRVRDFAEV   
Sbjct: 181 RLEFYSVEELTQIVMRSAALLGADISPDGATEIARRSRGTPRVVNRLLRRVRDFAEVKAE 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             I R++ADAALL L +D +G D +D + L  +   FGGGPVG++ ++A +SE R  IED
Sbjct: 241 GRINRQVADAALLMLDVDAIGLDVMDRKLLLTVMEKFGGGPVGVDNLAAAISEERGTIED 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           ++EPY+IQQG+++RTPRGR+   IA+QH G+ +P 
Sbjct: 301 VLEPYLIQQGYMKRTPRGRMATSIAYQHFGLALPR 335


>gi|17545219|ref|NP_518621.1| Holliday junction DNA helicase B [Ralstonia solanacearum GMI1000]
 gi|20140050|sp|Q8Y236|RUVB_RALSO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|17427510|emb|CAD14028.1| probable holliday junction dna helicase ruvb protein [Ralstonia
           solanacearum GMI1000]
          Length = 357

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 195/331 (58%), Positives = 242/331 (73%), Gaps = 2/331 (0%)

Query: 5   EGLLS--RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           E L+S       E+A    LRP+ L+E+ GQ +    L +F+ AAK R EALDHVL  GP
Sbjct: 15  ERLISASPASPNEEAFERALRPKLLDEYVGQEKVRGQLDIFMTAAKKRREALDHVLLFGP 74

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++ARE+GVN R TSGPV+ + GDLAALLTNLE  DVLFIDEIHRLS +VE
Sbjct: 75  PGLGKTTLAHIIAREMGVNLRQTSGPVLERPGDLAALLTNLEANDVLFIDEIHRLSPVVE 134

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILYPA+ED+Q+D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL F
Sbjct: 135 EILYPALEDYQIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEF 194

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y   +L  IV R A L    + ++ A EIA RSRGTPRIA RLLRRVRD+AEV     IT
Sbjct: 195 YTPTELARIVTRSAGLLDARIAEDGALEIAKRSRGTPRIANRLLRRVRDYAEVKADGVIT 254

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           R +ADAAL  L +D +GFD +D + L  I   F GGPVGI+ ++A + E RD IED++EP
Sbjct: 255 RAVADAALAMLDVDAVGFDLMDRKLLEAILHKFNGGPVGIDNLAAAIGEERDTIEDVLEP 314

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           Y+IQQG++QRTPRGR+    A+QH G+  P 
Sbjct: 315 YLIQQGYLQRTPRGRVATASAYQHFGLGAPK 345


>gi|330975327|gb|EGH75393.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 353

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 191/336 (56%), Positives = 250/336 (74%), Gaps = 2/336 (0%)

Query: 1   MMDREGLLSRN--VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M+D + L++      +++     +RP +L ++ GQ      +++FI+AA+ R+EALDH L
Sbjct: 1   MIDADRLITATGGRDRDEQIDRAIRPLSLADYIGQPTVREQMELFIQAARGRSEALDHTL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA ++A+E+GV+ +STSGPV+ + GDLAA+LTNLE  DVLFIDEIHRLS
Sbjct: 61  IFGPPGLGKTTLANIIAQEMGVSIKSTSGPVLERPGDLAAILTNLEPNDVLFIDEIHRLS 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            IVEE+LYPAMEDFQLD+M+GEGP+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  
Sbjct: 121 PIVEEVLYPAMEDFQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQ 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           RL FY I DL TIV R A + GL +  + A EIA R+RGTPRIA RLLRRVRDFAEV   
Sbjct: 181 RLEFYNIADLSTIVSRSAGILGLVIEPQGAFEIARRARGTPRIANRLLRRVRDFAEVRGN 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             ITR+ AD AL  L +D+ GFD  D R L  +   F GGPVG+++++A +SE R  IED
Sbjct: 241 GQITRQTADKALNLLDVDEHGFDHQDRRLLLTMIEKFDGGPVGVDSLAAAISEERHTIED 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           ++EPY+IQQG+I RTPRGR++   A+ H G++IP R
Sbjct: 301 VLEPYLIQQGYIMRTPRGRVVTRHAYLHFGLNIPSR 336


>gi|225023913|ref|ZP_03713105.1| hypothetical protein EIKCOROL_00779 [Eikenella corrodens ATCC
           23834]
 gi|224943387|gb|EEG24596.1| hypothetical protein EIKCOROL_00779 [Eikenella corrodens ATCC
           23834]
          Length = 343

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 194/330 (58%), Positives = 241/330 (73%), Gaps = 2/330 (0%)

Query: 3   DREGLLSRN--VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           + E L++     SQE+     LRP+TL ++ GQ +    L +FI+AAK R EALDH L  
Sbjct: 11  EPERLITARQVSSQEEQLERALRPKTLADYIGQAKTKEQLGIFIQAAKKRGEALDHTLLF 70

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A+ELGVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +
Sbjct: 71  GPPGLGKTTLAHIIAKELGVNLRQTSGPVLERAGDLAALLTNLEPHDVLFIDEIHRLSPV 130

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILYPA+ED+QLD+M+GEGP+ARSVKI+L  FTL+ ATTR G+LTNPL+DRFGI  RL
Sbjct: 131 VEEILYPALEDYQLDIMIGEGPAARSVKIDLPPFTLVGATTRAGMLTNPLRDRFGIVSRL 190

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY   DL TIV R A L  +++ D  A EIA RSRGTPRIA RLLRRVRD+AEV     
Sbjct: 191 EFYSSADLATIVSRSAGLLQMSLDDTGAFEIARRSRGTPRIANRLLRRVRDYAEVKSNGR 250

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +   +ADAAL  L +D  G D +D ++L  +   F GGPVG++ I+A + E  D IED+I
Sbjct: 251 VDAALADAALQMLDVDNEGLDMMDRKFLEAVLHKFAGGPVGLDNIAAAIGESPDTIEDVI 310

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           EPY+IQQGF+QRTPRGR+    ++ H G+ 
Sbjct: 311 EPYLIQQGFLQRTPRGRVATERSYSHFGLP 340


>gi|153000823|ref|YP_001366504.1| Holliday junction DNA helicase RuvB [Shewanella baltica OS185]
 gi|160875531|ref|YP_001554847.1| Holliday junction DNA helicase RuvB [Shewanella baltica OS195]
 gi|166231553|sp|A6WNQ2|RUVB_SHEB8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|189046048|sp|A9L3H7|RUVB_SHEB9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|151365441|gb|ABS08441.1| Holliday junction DNA helicase RuvB [Shewanella baltica OS185]
 gi|160861053|gb|ABX49587.1| Holliday junction DNA helicase RuvB [Shewanella baltica OS195]
 gi|315267719|gb|ADT94572.1| Holliday junction DNA helicase RuvB [Shewanella baltica OS678]
          Length = 334

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 195/334 (58%), Positives = 253/334 (75%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+   +  Q+++    +RP+ L+E+TGQ +  + LKVFI+AAK R EALDH+L 
Sbjct: 1   MIEADRLIQPQIQAQDESIDRAMRPKMLDEYTGQDDTRAQLKVFIQAAKNRNEALDHMLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN +STSGPV+ KAGDLAALLTNLE  DVLFIDEIHRLS 
Sbjct: 61  YGPPGLGKTTLAMIVANEMGVNIKSTSGPVLEKAGDLAALLTNLESGDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ ATTR G LT+PL+ RFGIP+R
Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGALTSPLRARFGIPLR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY I+DL TIV R A++  L +  E A EIA RSRGTPRIA RLLRRVRD+A+V H  
Sbjct: 181 LEFYNIKDLSTIVTRSAQVMELDIDAEGAFEIARRSRGTPRIANRLLRRVRDYAQVKHDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            +T+ +A+ AL  L +D  GFD +D + L  I   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 AVTKFVAEHALDLLDVDSEGFDYMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +EP++IQQGFIQRTPRGR+    A+QH  +  P 
Sbjct: 301 LEPFLIQQGFIQRTPRGRIATVRAYQHFELIKPE 334


>gi|323486644|ref|ZP_08091965.1| hypothetical protein HMPREF9474_03716 [Clostridium symbiosum
           WAL-14163]
 gi|323692210|ref|ZP_08106453.1| Holliday junction DNA helicase RuvB [Clostridium symbiosum
           WAL-14673]
 gi|323400025|gb|EGA92402.1| hypothetical protein HMPREF9474_03716 [Clostridium symbiosum
           WAL-14163]
 gi|323503784|gb|EGB19603.1| Holliday junction DNA helicase RuvB [Clostridium symbiosum
           WAL-14673]
          Length = 329

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 173/327 (52%), Positives = 239/327 (73%), Gaps = 1/327 (0%)

Query: 4   REGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
              +++  +++ED  I S LRP+ L+E+ GQ +  S LKVFI+AAK+R EALDHVLF GP
Sbjct: 2   SRRIITTEITEEDKRIESSLRPQYLDEYIGQEKIKSTLKVFIDAAKSRGEALDHVLFYGP 61

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTL  ++A E+GV  + TSGP I K G++AA+L  L++ DVLF+DEIHRL+  VE
Sbjct: 62  PGLGKTTLCGIIANEMGVKMKVTSGPAIEKPGEIAAILNGLQEGDVLFVDEIHRLNRQVE 121

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMED+ +D+M+G+  +ARS+++ L +FTL+ ATTR GLLT PL+DRFGI  +++F
Sbjct: 122 EVLYPAMEDYAIDIMLGKDSTARSIRLELPKFTLVGATTRAGLLTAPLRDRFGIIQKMDF 181

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  E+LKTI+ R A +  + + +  A EIA RSRGTPR+A RLL+RVRDFA+V +   IT
Sbjct: 182 YMPEELKTIILRSAGVMKVEIDERGAYEIARRSRGTPRLANRLLKRVRDFAQVKYEGVIT 241

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           +E+AD AL  L +DK+G D  D   LT++   F GGPVG++T++A L E    +ED+ EP
Sbjct: 242 KEVADFALDILDVDKLGLDNNDRAILTIMIEKFSGGPVGLDTLAAALGEDSGTLEDVYEP 301

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           Y++  GFI RTPRGR+    A+ HLG+
Sbjct: 302 YLLMNGFINRTPRGRVATEAAYHHLGL 328


>gi|254516708|ref|ZP_05128767.1| Holliday junction DNA helicase RuvB [gamma proteobacterium NOR5-3]
 gi|219675131|gb|EED31498.1| Holliday junction DNA helicase RuvB [gamma proteobacterium NOR5-3]
          Length = 356

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 188/334 (56%), Positives = 252/334 (75%), Gaps = 2/334 (0%)

Query: 1   MMDREGLLSR--NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M++ + L++     + EDA    +RP++L E+ GQ  A   +++F+ AAK R E LDH L
Sbjct: 1   MIETDRLIAPAPTTANEDALDRAVRPKSLAEYIGQPVAREQMEIFLAAAKGREEPLDHTL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA ++A E+GV+ ++TSGPV+ KAGD+AAL+TNLE  DVLFIDEIHRLS
Sbjct: 61  IFGPPGLGKTTLASIIANEMGVSLKTTSGPVLEKAGDIAALMTNLEPGDVLFIDEIHRLS 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
             VEEILYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ ATTR GLLT+PL+DRFGI  
Sbjct: 121 PFVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGLLTSPLRDRFGIVQ 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           RL FY ++DL  IV R A++ G+ + +  A EIA R+RGTPRIA RLLRRVRD+AEV   
Sbjct: 181 RLEFYAVDDLAVIVARSARILGIPMDEAGAREIARRARGTPRIANRLLRRVRDYAEVKGD 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
            T+ R+IAD AL  L++D  GFD LD R L  +   F GGPVG+++++A LSE R  IED
Sbjct: 241 GTVNRDIADRALDLLSVDAKGFDHLDRRLLLAMIEKFDGGPVGVDSLAAALSEERGTIED 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++EP++IQQG++ RTPRGR++  +A+QH G+ +P
Sbjct: 301 VLEPFLIQQGYMIRTPRGRMVTRLAYQHFGVPMP 334


>gi|188533632|ref|YP_001907429.1| Holliday junction DNA helicase RuvB [Erwinia tasmaniensis Et1/99]
 gi|238691997|sp|B2VJ95|RUVB_ERWT9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|188028674|emb|CAO96536.1| Holliday junction ATP-dependent DNA helicase [Erwinia tasmaniensis
           Et1/99]
          Length = 334

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 193/331 (58%), Positives = 248/331 (74%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S  V S+E+     +RP+ L E+ GQ      +++FI+AA  R +ALDH+L 
Sbjct: 1   MIEADRLVSAGVISEEEVIDRAIRPKMLAEYVGQPVVREQMEIFIKAAMMRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAALLTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAALLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY +EDL+ IV R A   GL ++DE A EIA R+RGTPRIA RLLRRVRDFAEV    
Sbjct: 181 LEFYRVEDLQHIVGRSAACLGLPLSDEGALEIARRARGTPRIANRLLRRVRDFAEVRAGG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            ++ ++A  AL  L++D  GFD +D + L  I   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 EMSGDVASRALDMLSVDSEGFDYMDRKLLLAIIDKFTGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           +EPY+IQQGFIQRTPRGR+    A++H GI 
Sbjct: 301 LEPYLIQQGFIQRTPRGRMATQHAYKHFGIT 331


>gi|291545899|emb|CBL19007.1| Holliday junction DNA helicase, RuvB subunit [Ruminococcus sp.
           SR1/5]
          Length = 336

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 169/331 (51%), Positives = 242/331 (73%), Gaps = 1/331 (0%)

Query: 4   REGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
              +++ +V++ED  +   LRP++L+E+ GQ +    LK++IEAAK R ++LDHVLF GP
Sbjct: 2   ENRIITTDVTEEDFSLEGNLRPQSLDEYIGQQKTKDTLKIYIEAAKQRHDSLDHVLFYGP 61

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTL+ ++A E+G + + TSGP I K G++AA+L NL++ DVLF+DEIHRL+  VE
Sbjct: 62  PGLGKTTLSAIIANEMGTHMKVTSGPAIEKPGEMAAILNNLQEGDVLFVDEIHRLNRQVE 121

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMEDF +D+M+G+G SARS++++L +FTL+ ATTR GLL+ PL+DRFG+  RL F
Sbjct: 122 EVLYPAMEDFAIDIMIGKGASARSIRLDLPKFTLVGATTRAGLLSAPLRDRFGVTQRLEF 181

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y+ ++L TI+ R A++ G+ +    A EIA RSRGTPR+A RLL+RVRDFA+V +   IT
Sbjct: 182 YDKKELTTIILRSAQVLGVEIEPNGAAEIAKRSRGTPRLANRLLKRVRDFAQVKYNGVIT 241

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            ++A  AL  L +D+ G D+ D R L  +  NF GGPVG+ET++A + E    +ED+ EP
Sbjct: 242 YDVACFALDLLEVDQYGLDKTDRRILQTLILNFQGGPVGLETLAASIGEDSGTLEDVYEP 301

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           Y++Q GF+ RTPRGR+   +A+ HLG   P 
Sbjct: 302 YLLQTGFLNRTPRGRMASVLAYTHLGYPRPD 332


>gi|271500731|ref|YP_003333756.1| Holliday junction DNA helicase RuvB [Dickeya dadantii Ech586]
 gi|270344286|gb|ACZ77051.1| Holliday junction DNA helicase RuvB [Dickeya dadantii Ech586]
          Length = 336

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 191/331 (57%), Positives = 248/331 (74%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S    S E+     +RP+ L E+ GQ      +++FIEAA+ R +ALDH+L 
Sbjct: 1   MIEADRLISPAAASDEEILDRAIRPKLLSEYVGQPVVREQMEIFIEAARKRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAALLTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAALLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IVQR A+  GL +T + A EIA RSRGTPRIA RLLRRVRDF+EV    
Sbjct: 181 LEFYQVADLQHIVQRSAQCLGLDMTGDGALEIARRSRGTPRIANRLLRRVRDFSEVKSDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I+ ++A  AL  LA+D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 AISADVAVQALDMLAVDSEGFDYMDRKLLLAVIDKFMGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           +EPY+IQQGF+QRTPRGR+    A++H G+ 
Sbjct: 301 LEPYLIQQGFLQRTPRGRIATQHAYRHFGLT 331


>gi|255658188|ref|ZP_05403597.1| holliday junction DNA helicase RuvB [Mitsuokella multacida DSM
           20544]
 gi|260849496|gb|EEX69503.1| holliday junction DNA helicase RuvB [Mitsuokella multacida DSM
           20544]
          Length = 339

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 185/332 (55%), Positives = 244/332 (73%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           D + +++ +  + D     LRPR L E+ GQ +  +NL +FI+AA +R EALDHVL  GP
Sbjct: 8   DEDRIVAMDEQRADDWQYSLRPRKLNEYIGQEKVKANLSIFIQAALSRGEALDHVLLYGP 67

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++A ELGVNFR TSGP I ++GDLAALLTNL++ DVLFIDEIHRLS  VE
Sbjct: 68  PGLGKTTLAGIIANELGVNFRQTSGPAIERSGDLAALLTNLQEHDVLFIDEIHRLSHSVE 127

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LY AMEDF LD+++G+GPSARS++++++ FTLI ATT+ G L  PL+DRFG+  RL +
Sbjct: 128 EVLYSAMEDFALDIIIGKGPSARSIRLDIAPFTLIGATTKAGALAAPLRDRFGVISRLEY 187

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  + L  I++R A++  +A+ DE A EIA RSRGTPR+A RLL+RVRD A++  + TIT
Sbjct: 188 YTPDALVHIIKRAAEILDIAIEDEGALEIARRSRGTPRVANRLLKRVRDVAQIEGSGTIT 247

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            EIAD AL  L +DK G D  D R L  +   F GGPVG++T++A +SE RD IED+ EP
Sbjct: 248 NEIADKALRMLEVDKAGLDHTDRRMLRTMIEKFAGGPVGLDTLAAAISEARDTIEDVYEP 307

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           Y+IQ GFI RTPRGR++    ++HLGI  P +
Sbjct: 308 YLIQLGFINRTPRGRIVTEAGYRHLGIPYPEK 339


>gi|22126138|ref|NP_669561.1| Holliday junction DNA helicase RuvB [Yersinia pestis KIM 10]
 gi|45441703|ref|NP_993242.1| Holliday junction DNA helicase RuvB [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51596367|ref|YP_070558.1| Holliday junction DNA helicase RuvB [Yersinia pseudotuberculosis IP
           32953]
 gi|108807437|ref|YP_651353.1| Holliday junction DNA helicase RuvB [Yersinia pestis Antiqua]
 gi|108811698|ref|YP_647465.1| Holliday junction DNA helicase RuvB [Yersinia pestis Nepal516]
 gi|145598359|ref|YP_001162435.1| Holliday junction DNA helicase RuvB [Yersinia pestis Pestoides F]
 gi|149366013|ref|ZP_01888048.1| Holliday junction DNA helicase [Yersinia pestis CA88-4125]
 gi|153948000|ref|YP_001401003.1| Holliday junction DNA helicase RuvB [Yersinia pseudotuberculosis IP
           31758]
 gi|165928350|ref|ZP_02224182.1| Holliday junction DNA helicase RuvB [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165938878|ref|ZP_02227432.1| Holliday junction DNA helicase RuvB [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166009231|ref|ZP_02230129.1| Holliday junction DNA helicase RuvB [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166210761|ref|ZP_02236796.1| Holliday junction DNA helicase RuvB [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167401423|ref|ZP_02306920.1| Holliday junction DNA helicase RuvB [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167419932|ref|ZP_02311685.1| Holliday junction DNA helicase RuvB [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167424488|ref|ZP_02316241.1| Holliday junction DNA helicase RuvB [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|170024377|ref|YP_001720882.1| Holliday junction DNA helicase RuvB [Yersinia pseudotuberculosis
           YPIII]
 gi|186895408|ref|YP_001872520.1| Holliday junction DNA helicase RuvB [Yersinia pseudotuberculosis
           PB1/+]
 gi|218929165|ref|YP_002347040.1| Holliday junction DNA helicase RuvB [Yersinia pestis CO92]
 gi|229894772|ref|ZP_04509952.1| ATP-dependent DNA helicase, component of RuvABC resolvasome
           [Yersinia pestis Pestoides A]
 gi|229897475|ref|ZP_04512631.1| ATP-dependent DNA helicase, component of RuvABC resolvasome
           [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229898121|ref|ZP_04513270.1| ATP-dependent DNA helicase, component of RuvABC resolvasome
           [Yersinia pestis biovar Orientalis str. India 195]
 gi|229901980|ref|ZP_04517101.1| ATP-dependent DNA helicase, component of RuvABC resolvasome
           [Yersinia pestis Nepal516]
 gi|270490836|ref|ZP_06207910.1| Holliday junction DNA helicase RuvB [Yersinia pestis KIM D27]
 gi|294503876|ref|YP_003567938.1| Holliday junction DNA helicase RuvB [Yersinia pestis Z176003]
 gi|20140070|sp|Q8ZEU5|RUVB_YERPE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|68715422|sp|Q66AT9|RUVB_YERPS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|123072836|sp|Q1C814|RUVB_YERPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|123373278|sp|Q1CJG5|RUVB_YERPN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|166231571|sp|A4TJK0|RUVB_YERPP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|167012673|sp|A7FIC5|RUVB_YERP3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|238688451|sp|B1JLL0|RUVB_YERPY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|238691371|sp|B2K324|RUVB_YERPB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|21959099|gb|AAM85812.1|AE013828_3 Holliday junction helicase subunit A [Yersinia pestis KIM 10]
 gi|45436565|gb|AAS62119.1| Holliday junction DNA helicase [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51589649|emb|CAH21279.1| Holliday junction DNA helicase [Yersinia pseudotuberculosis IP
           32953]
 gi|108775346|gb|ABG17865.1| Holliday junction DNA helicase subunit RuvB [Yersinia pestis
           Nepal516]
 gi|108779350|gb|ABG13408.1| Holliday junction DNA helicase subunit RuvB [Yersinia pestis
           Antiqua]
 gi|115347776|emb|CAL20693.1| Holliday junction DNA helicase [Yersinia pestis CO92]
 gi|145210055|gb|ABP39462.1| Holliday junction DNA helicase subunit RuvB [Yersinia pestis
           Pestoides F]
 gi|149292426|gb|EDM42500.1| Holliday junction DNA helicase [Yersinia pestis CA88-4125]
 gi|152959495|gb|ABS46956.1| Holliday junction DNA helicase RuvB [Yersinia pseudotuberculosis IP
           31758]
 gi|165913241|gb|EDR31864.1| Holliday junction DNA helicase RuvB [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165919633|gb|EDR36966.1| Holliday junction DNA helicase RuvB [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165991786|gb|EDR44087.1| Holliday junction DNA helicase RuvB [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166207941|gb|EDR52421.1| Holliday junction DNA helicase RuvB [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166961627|gb|EDR57648.1| Holliday junction DNA helicase RuvB [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167049119|gb|EDR60527.1| Holliday junction DNA helicase RuvB [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167056370|gb|EDR66139.1| Holliday junction DNA helicase RuvB [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169750911|gb|ACA68429.1| Holliday junction DNA helicase RuvB [Yersinia pseudotuberculosis
           YPIII]
 gi|186698434|gb|ACC89063.1| Holliday junction DNA helicase RuvB [Yersinia pseudotuberculosis
           PB1/+]
 gi|229680876|gb|EEO76971.1| ATP-dependent DNA helicase, component of RuvABC resolvasome
           [Yersinia pestis Nepal516]
 gi|229688837|gb|EEO80904.1| ATP-dependent DNA helicase, component of RuvABC resolvasome
           [Yersinia pestis biovar Orientalis str. India 195]
 gi|229693812|gb|EEO83861.1| ATP-dependent DNA helicase, component of RuvABC resolvasome
           [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229702245|gb|EEO90264.1| ATP-dependent DNA helicase, component of RuvABC resolvasome
           [Yersinia pestis Pestoides A]
 gi|262362005|gb|ACY58726.1| Holliday junction DNA helicase RuvB [Yersinia pestis D106004]
 gi|262365858|gb|ACY62415.1| Holliday junction DNA helicase RuvB [Yersinia pestis D182038]
 gi|270339340|gb|EFA50117.1| Holliday junction DNA helicase RuvB [Yersinia pestis KIM D27]
 gi|294354335|gb|ADE64676.1| Holliday junction DNA helicase RuvB [Yersinia pestis Z176003]
 gi|320015264|gb|ADV98835.1| ATP-dependent DNA helicase, component of RuvABC resolvasome
           [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 334

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 192/331 (58%), Positives = 246/331 (74%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S  V + E++    +RP+ L E+ GQ      +++FI+AAK R +ALDHVL 
Sbjct: 1   MIEADRLISAAVINDEESIDRAIRPKLLTEYVGQPHVREQMEIFIQAAKQRGDALDHVLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIIANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IV R AK  GL +T E A ++A RSRGTPRI  RLLRRVRDFAEV    
Sbjct: 181 LEFYQVADLEHIVSRSAKCLGLELTPEGAHQLARRSRGTPRITNRLLRRVRDFAEVRADG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  E+A  AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 AINGEVAMKALDMLNVDAEGFDFMDRKLLLAVIDKFMGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           +EPY+IQQGFIQRTPRGR+    A++H GI 
Sbjct: 301 LEPYLIQQGFIQRTPRGRIATNHAYKHFGIT 331


>gi|260768874|ref|ZP_05877808.1| holliday junction DNA helicase RuvB [Vibrio furnissii CIP 102972]
 gi|260616904|gb|EEX42089.1| holliday junction DNA helicase RuvB [Vibrio furnissii CIP 102972]
 gi|315180568|gb|ADT87482.1| Holliday junction DNA helicase B [Vibrio furnissii NCTC 11218]
          Length = 334

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 187/333 (56%), Positives = 248/333 (74%), Gaps = 3/333 (0%)

Query: 1   MMDREGLL---SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M++ + L+   + +   E+     +RP+ L ++ GQ      +++FI+AA+ R+EALDH+
Sbjct: 1   MIEADRLIAPTNPSFKDEEVIDRAIRPKKLADYRGQDHVRDQMEIFIQAAQKRSEALDHL 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTLA +VA E+ V+ R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRL
Sbjct: 61  LIFGPPGLGKTTLANIVANEMEVSIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           S +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI 
Sbjct: 121 SPMVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIV 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            RL +Y++ DL+ IVQR A   GL++  E A E+A R+RGTPRIA RLLRRVRDFAEV  
Sbjct: 181 QRLEYYKVADLQHIVQRSADCLGLSMDAEGALEVARRARGTPRIANRLLRRVRDFAEVKG 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
              I  +IAD AL  L +D  GFD +D + L  I   FGGGPVG++ ++A + E +D IE
Sbjct: 241 NGHICADIADKALNMLDVDHQGFDYMDRKLLLAIMEKFGGGPVGLDNLAAAIGEEKDTIE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           D+IEP++IQQG++QRTPRGR+    A+ H G++
Sbjct: 301 DVIEPFLIQQGYLQRTPRGRIATDRAYLHFGLE 333


>gi|320539864|ref|ZP_08039523.1| ATP-dependent DNA helicase, component of RuvABC resolvasome
           [Serratia symbiotica str. Tucson]
 gi|320030050|gb|EFW12070.1| ATP-dependent DNA helicase, component of RuvABC resolvasome
           [Serratia symbiotica str. Tucson]
          Length = 335

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 187/331 (56%), Positives = 248/331 (74%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSRN-VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S   +++E+     +RP+ L E+ GQ   C  +++FI+AA+ R +ALDH+L 
Sbjct: 1   MIEADRLISAEPINEEELLDRAIRPKLLAEYVGQPHVCEQMEIFIQAARQRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IV R A+  GL ++ + A +IA R+RGTPRIA RLLRRVRDFAEV    
Sbjct: 181 LEFYQVADLQLIVSRSARCLGLDLSGDGAHQIARRARGTPRIANRLLRRVRDFAEVRANG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  E+A  AL  L +D  GFD +D + L  I   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 LINGEVAMQALDMLNVDAEGFDYMDRKLLLAIIDKFTGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           IEP++IQ GFIQRTPRGR+    A++H GI+
Sbjct: 301 IEPFLIQHGFIQRTPRGRMATHHAYRHFGIE 331


>gi|262171191|ref|ZP_06038869.1| holliday junction DNA helicase RuvB [Vibrio mimicus MB-451]
 gi|261892267|gb|EEY38253.1| holliday junction DNA helicase RuvB [Vibrio mimicus MB-451]
          Length = 334

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 184/333 (55%), Positives = 244/333 (73%), Gaps = 3/333 (0%)

Query: 1   MMDREGLLSR---NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M++ + L++        E+     +RP+ L ++ GQ      +++FI+AA+ R EALDH+
Sbjct: 1   MIEADRLIAPVNHTFKDEEVIDRAIRPKKLADYQGQDHVRDQMEIFIKAAQQRQEALDHL 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRL
Sbjct: 61  LIFGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           S +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI 
Sbjct: 121 SPMVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIV 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            RL +Y + DL+ IVQR A   GL++  + A E+A R+RGTPRIA RLLRRVRD+AEV  
Sbjct: 181 QRLEYYNVADLQNIVQRSAHCLGLSMDSDGALEVARRARGTPRIANRLLRRVRDYAEVKG 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
              I  + AD AL  L +D  GFD +D + L  I   F GGPVG++ ++A + E +D IE
Sbjct: 241 DGHICAKTADKALDMLDVDHQGFDYMDRKLLLAIMEKFSGGPVGLDNLAAAIGEEKDTIE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           D++EP++IQQG++QRTPRGR+    A+ H G++
Sbjct: 301 DVLEPFLIQQGYLQRTPRGRIATDRAYLHFGLE 333


>gi|152976838|ref|YP_001376355.1| Holliday junction DNA helicase B [Bacillus cereus subsp. cytotoxis
           NVH 391-98]
 gi|189045780|sp|A7GTA2|RUVB_BACCN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|152025590|gb|ABS23360.1| Holliday junction DNA helicase RuvB [Bacillus cytotoxicus NVH
           391-98]
          Length = 333

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 189/333 (56%), Positives = 246/333 (73%), Gaps = 2/333 (0%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD E LLS   + EDAD+   LRP+TL ++ GQ +A  NL+VFIEAAK R E LDHVL  
Sbjct: 1   MD-ERLLSGESAYEDADLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLLY 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT L+  DVLFIDEIHRL   
Sbjct: 60  GPPGLGKTTLANIIANEMGVNIRTTSGPAIERPGDLAAVLTALQPGDVLFIDEIHRLHRS 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EE+LYPAMEDF LD+++G+GP+ARSV+++L  FTL+ ATTR G L+ PL+DRFG+  RL
Sbjct: 120 IEEVLYPAMEDFCLDIVIGKGPTARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y ++ L  IV+R A++  + +   AA EIA R+RGTPRIA RLLRRVRDFA+V    T
Sbjct: 180 EYYTVDQLSAIVERTAEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRGDGT 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I  EI   AL  L +DK+G D +D ++L  I   F GGPVG+ET+SA + E    IED+ 
Sbjct: 240 IAMEITQMALELLQVDKLGLDHIDHKFLLGIIEKFRGGPVGLETVSATIGEESHTIEDVY 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY++Q GF+QRTPRGR++ P+A+QH G+++P 
Sbjct: 300 EPYLLQIGFLQRTPRGRIVTPLAYQHFGMEMPK 332


>gi|238788519|ref|ZP_04632312.1| Holliday junction DNA helicase RuvB [Yersinia frederiksenii ATCC
           33641]
 gi|238723432|gb|EEQ15079.1| Holliday junction DNA helicase RuvB [Yersinia frederiksenii ATCC
           33641]
          Length = 334

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 193/331 (58%), Positives = 246/331 (74%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S  V S E++    +RP+ L E+ GQ      +++FI+AAK R +ALDHVL 
Sbjct: 1   MIEADRLISAGVISDEESIDRAIRPKLLAEYVGQPHVREQMEIFIQAAKQRGDALDHVLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IV R AK  GL +T E A ++A RSRGTPRI  RLLRRVRDFAEV    
Sbjct: 181 LEFYQVADLEHIVSRSAKCLGLELTAEGAHQLARRSRGTPRITNRLLRRVRDFAEVRADG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  ++A  AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 AINGDVAMKALDMLNVDAEGFDFMDRKLLLAVIDKFMGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           +EPY+IQQGFIQRTPRGR+    A++H GI 
Sbjct: 301 LEPYLIQQGFIQRTPRGRIATNHAYKHFGIT 331


>gi|238756970|ref|ZP_04618158.1| Holliday junction DNA helicase RuvB [Yersinia aldovae ATCC 35236]
 gi|238704800|gb|EEP97329.1| Holliday junction DNA helicase RuvB [Yersinia aldovae ATCC 35236]
          Length = 334

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 193/331 (58%), Positives = 247/331 (74%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S +V S E++    +RP+ L E+ GQ      +++FI+AAK R +ALDHVL 
Sbjct: 1   MIEADRLISASVISDEESIDRAIRPKLLAEYVGQPHVREQMEIFIQAAKQRGDALDHVLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IV R AK  GL +T E A ++A RSRGTPRI  RLLRRVRDFAEV    
Sbjct: 181 LEFYQVADLEHIVARSAKCLGLELTAEGAHQLARRSRGTPRITNRLLRRVRDFAEVRADG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  ++A  AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 AINGDVAMKALDMLNVDAEGFDFMDRKLLLAVIDKFMGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           +EPY+IQQGFIQRTPRGR+    A++H GI 
Sbjct: 301 LEPYLIQQGFIQRTPRGRIATNHAYKHFGIT 331


>gi|219847790|ref|YP_002462223.1| Holliday junction DNA helicase RuvB [Chloroflexus aggregans DSM
           9485]
 gi|254767418|sp|B8G5S6|RUVB_CHLAD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|219542049|gb|ACL23787.1| Holliday junction DNA helicase RuvB [Chloroflexus aggregans DSM
           9485]
          Length = 350

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 182/334 (54%), Positives = 237/334 (70%), Gaps = 1/334 (0%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M  E L++ +   +D  +   LRPRTL EF GQ +    L++ I AA+ R EALDH LF 
Sbjct: 1   MSAERLVNPHSDSDDQQVEKSLRPRTLSEFIGQEKVVEQLRIAIAAARGRNEALDHTLFY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKT+LA VVA E+G   + TSGP I +AGDLAA+LTNL+  DVLFIDE+HRL+  
Sbjct: 61  GPPGLGKTSLANVVANEMGAKIKITSGPAIERAGDLAAILTNLQPNDVLFIDEVHRLNRA 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDF LDL+VG+GP ARS+++NL RFT+I ATTR+ LLT+PL+DRF    RL
Sbjct: 121 VEEVLYPAMEDFALDLVVGKGPGARSLRLNLPRFTVIGATTRLALLTSPLRDRFVAVHRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY    +  IV R A++ G+ ++ E A EI  R+RGTPRIA R+LRRVRD+A+V     
Sbjct: 181 VFYSDAAMTEIVSRSARILGVPISPEGAREIGRRARGTPRIANRILRRVRDYAQVVANGE 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           IT  +A  AL +L ID++G D+ D R L  I   F GGPVG+ T++A L+E  DAIED+ 
Sbjct: 241 ITLAVAREALAQLEIDELGLDENDRRLLRAIIELFNGGPVGLNTLAAALAEEVDAIEDVY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           EP+++Q GF+QRTPRGR+    A++HLG+  P R
Sbjct: 301 EPFLLQLGFLQRTPRGRVATRRAYEHLGLPFPER 334


>gi|319778461|ref|YP_004129374.1| Holliday junction DNA helicase RuvB [Taylorella equigenitalis MCE9]
 gi|317108485|gb|ADU91231.1| Holliday junction DNA helicase RuvB [Taylorella equigenitalis MCE9]
          Length = 363

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 187/320 (58%), Positives = 236/320 (73%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           S+ED+    LRP+TL+++ GQ + C  L++FI+AAK R EALDHVL  GPPGLGKTTLA 
Sbjct: 24  SREDSFEKALRPKTLDDYKGQDKVCQQLEIFIKAAKNRGEALDHVLLFGPPGLGKTTLAH 83

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++A E+G   R TSGPV+ K GDLAA+LTNL   DVLFIDEIHRLS +VEEILYPA+EDF
Sbjct: 84  IIANEMGTKMRQTSGPVLEKPGDLAAILTNLNKNDVLFIDEIHRLSPVVEEILYPALEDF 143

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           Q+D+M+G+GP+ARS+KI+L  FTL+ ATTR G+LTNPL++RFGI  RL FY  E L  IV
Sbjct: 144 QIDIMIGDGPAARSIKIDLQPFTLVGATTRAGMLTNPLRNRFGIISRLEFYSTEHLAHIV 203

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R A+L G  + ++ A EIA RSRGTPRIA RLLRRVRDFA+V +   I+ EIA  AL  
Sbjct: 204 TRSARLLGANIEEKGAFEIARRSRGTPRIANRLLRRVRDFADVKNNGLISDEIAAEALGM 263

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D +G D +D R L  I   F GGPVG++ ++A + E    IE++IEPY+IQ GFIQR
Sbjct: 264 LEVDPIGLDNMDRRLLEAILLKFQGGPVGVDNLAAAIGEESHTIEEIIEPYLIQHGFIQR 323

Query: 313 TPRGRLLMPIAWQHLGIDIP 332
           TPRGR+    AW H  ++ P
Sbjct: 324 TPRGRMATIHAWNHFNLNPP 343


>gi|288940997|ref|YP_003443237.1| Holliday junction DNA helicase RuvB [Allochromatium vinosum DSM
           180]
 gi|288896369|gb|ADC62205.1| Holliday junction DNA helicase RuvB [Allochromatium vinosum DSM
           180]
          Length = 351

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 185/331 (55%), Positives = 241/331 (72%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M D + L++     +D A    +RPR L ++ GQ      +++FI AA+ R EALDHVL 
Sbjct: 1   MNDPDRLITAEAGADDRAIDRAIRPRKLADYVGQPAVREQMEIFIGAARGRKEALDHVLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTL+ ++A E+ VN R TSGPV+ K GDLAALLTNL+  DVLF+DEIHRLS 
Sbjct: 61  FGPPGLGKTTLSHIIAHEMQVNLRQTSGPVLEKPGDLAALLTNLDPGDVLFVDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ ATTR GLLT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGLLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y  EDL  IVQR A + G+    + A EIA R+RGTPRIA RLLRRVRD+A+V    
Sbjct: 181 LEYYSAEDLTHIVQRSAGILGIEAEPDGAAEIARRARGTPRIANRLLRRVRDYAQVRGDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I+ EIAD AL  L +D +GFD +D R L+ +   F GGPVG+E+++A + E R  IED+
Sbjct: 241 RISAEIADRALSMLKVDALGFDHMDRRLLSAVIEKFDGGPVGVESLAAAIGEERGTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           +EP++IQQGF+ RTPRGR+    A+QH G+ 
Sbjct: 301 LEPFLIQQGFLMRTPRGRMATQSAYQHFGLS 331


>gi|148555053|ref|YP_001262635.1| Holliday junction DNA helicase RuvB [Sphingomonas wittichii RW1]
 gi|172048254|sp|A5V881|RUVB_SPHWW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|148500243|gb|ABQ68497.1| Holliday junction DNA helicase RuvB [Sphingomonas wittichii RW1]
          Length = 342

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 215/332 (64%), Positives = 259/332 (78%), Gaps = 1/332 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D + LLS     ED D + LRPR+L+EF GQ  A  NL+VFIEAA+ R +ALDHVLF 
Sbjct: 1   MTDTDRLLSAGRRAEDVD-AALRPRSLDEFVGQQAARDNLRVFIEAARQRGDALDHVLFF 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++A+E+G  FR+TSGPVIAK+GDLAALLTNLED DVLFIDEIHRL   
Sbjct: 60  GPPGLGKTTLAQIIAKEMGAGFRATSGPVIAKSGDLAALLTNLEDGDVLFIDEIHRLQPQ 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMED  LDLM+GEGPSARSV+I+L RFTL+ ATTR GL+T PL+DRFGIPIRL
Sbjct: 120 VEEVLYPAMEDRALDLMIGEGPSARSVRIDLPRFTLVGATTRQGLITTPLRDRFGIPIRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY +E+L+ +V R A+L  L +  + A EIA R+RGTPRIAGRLLRRVRDFA V  A  
Sbjct: 180 QFYTVEELERVVSRAARLLDLPIASDGAMEIARRARGTPRIAGRLLRRVRDFAHVLGADI 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +  ++AD +L RL +D +G D +D RYL MIA  + GGPVG+ET++AGLSEPRD IED+I
Sbjct: 240 VDAKVADQSLNRLEVDNLGLDAMDRRYLHMIADIYRGGPVGVETLAAGLSEPRDTIEDVI 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EPY+IQ G I RT RGR L    W+HLG++ P
Sbjct: 300 EPYLIQLGLIARTARGRCLNGRGWKHLGLNPP 331


>gi|332977851|gb|EGK14604.1| crossover junction ATP-dependent DNA helicase RuvB [Desmospora sp.
           8437]
          Length = 332

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 178/330 (53%), Positives = 242/330 (73%), Gaps = 1/330 (0%)

Query: 4   REGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
            E ++S + S ED  +   LRPR L+++ GQ     NLKV+IEAAK R + LDHVL  GP
Sbjct: 2   EERMISSHFSAEDEPMEFSLRPRYLDDYIGQTRVKENLKVYIEAAKMRRDPLDHVLLYGP 61

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTL+ ++A E+GV  R+TSGP I + GDLAA+LTNL+  D+LFIDEIHRL+  VE
Sbjct: 62  PGLGKTTLSHIIANEMGVQVRTTSGPAIERPGDLAAILTNLQQGDLLFIDEIHRLNRSVE 121

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTR G L++PL+DRFG+  RL  
Sbjct: 122 EVLYPAMEDFALDIVIGKGPSARSVRLDLPPFTLVGATTRAGSLSSPLRDRFGVVSRLEH 181

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  E+L  IV R A L G+++ ++ A EIA R+RGTPR++ RLL+RVRDF +V     IT
Sbjct: 182 YTTEELSLIVMRAADLLGVSIREDGAEEIACRARGTPRVSNRLLKRVRDFVQVQGDGVIT 241

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            E A  AL R+ +D++G D++D + L  I  +F GGPVG+ETI+A + E    +ED+ EP
Sbjct: 242 GEAARDALDRIQVDRLGLDEVDHKLLKTIITHFRGGPVGLETIAATIGEEAHTVEDVYEP 301

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           Y++Q GF+QRTPRGR+L P  +QH G+++P
Sbjct: 302 YLMQIGFLQRTPRGRMLTPRCYQHFGVELP 331


>gi|166031913|ref|ZP_02234742.1| hypothetical protein DORFOR_01614 [Dorea formicigenerans ATCC
           27755]
 gi|166028366|gb|EDR47123.1| hypothetical protein DORFOR_01614 [Dorea formicigenerans ATCC
           27755]
          Length = 335

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 177/328 (53%), Positives = 241/328 (73%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M R  + + N+ ++    S LRP+ L+++ GQ +A   LKV+I AAK R E LDHVLF G
Sbjct: 1   MSRRIITTENLEEDVKIESHLRPQLLDDYIGQEKAKEILKVYITAAKERGETLDHVLFYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+ VN + TSGP I K G++AA+L NL++ DVLF+DEIHRL+  V
Sbjct: 61  PPGLGKTTLAGIIANEMHVNIKITSGPAIEKPGEMAAILNNLQEGDVLFVDEIHRLNRQV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMED+ +D+M+G+G SARS++++L +FTL+ ATTRVG+LT PL+DRFG+  RL 
Sbjct: 121 EEVLYPAMEDYAIDIMIGKGASARSIRLDLPKFTLVGATTRVGMLTAPLRDRFGVIHRLE 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY +E+LK I+ R AK+  + + D  A  +A RSRGTPR+A RLL+RVRDFA+V +   I
Sbjct: 181 FYTVEELKRIIARSAKVLDVGIDDAGATALARRSRGTPRLANRLLKRVRDFAQVKYDGYI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T ++A+ AL  L +DK G DQ D   L  I   F GGPVG++T++A LSE    IED+ E
Sbjct: 241 TEDVANYALDLLDVDKCGLDQTDRNLLMTIIERFDGGPVGLDTLAASLSEDSGTIEDVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           PY+++ GFIQRTPRGR++  +A+ HLGI
Sbjct: 301 PYLLKNGFIQRTPRGRIVTDLAYAHLGI 328


>gi|220928773|ref|YP_002505682.1| Holliday junction DNA helicase RuvB [Clostridium cellulolyticum
           H10]
 gi|219999101|gb|ACL75702.1| Holliday junction DNA helicase RuvB [Clostridium cellulolyticum
           H10]
          Length = 335

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 185/328 (56%), Positives = 234/328 (71%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           E L+      +D D   LRP+   E+ GQ +   NL VFIEAAK R EALDHVL  GPPG
Sbjct: 7   ERLVEAGTRSDDLDEVSLRPKRFGEYIGQAKVKDNLTVFIEAAKKRKEALDHVLLYGPPG 66

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLA +++ E+GVN R TSGP I KAGDLAA+LTNL   DVLFIDEIHRL+  VEEI
Sbjct: 67  LGKTTLASIISSEMGVNLRITSGPAIEKAGDLAAILTNLGTHDVLFIDEIHRLNRSVEEI 126

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPAMED+ LD+++G+GPSARS++++L +FTLI ATTR GLLT PL+DRFG+  +L  Y 
Sbjct: 127 LYPAMEDYALDIIIGKGPSARSIRLDLPKFTLIGATTRAGLLTAPLRDRFGVINKLEMYS 186

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            E+LK IV+R A +  + + DE A EIA RSRGTPRIA RLL+RVRDFA+V  + TI  E
Sbjct: 187 AEELKEIVRRSAGILNIGLDDEGAYEIARRSRGTPRIANRLLKRVRDFAQVKGSGTIELE 246

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +A  AL  L +D++G D +D   L  I   FGGGPVG++T++A + E    IED+ EPY+
Sbjct: 247 LAKHALDALEVDEIGLDGVDRNMLLSIINKFGGGPVGLDTLAASIGEEAGTIEDVYEPYL 306

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           IQ GFI +TPRGR+    A+ H G++  
Sbjct: 307 IQLGFINKTPRGRMTTKNAYAHFGLEYD 334


>gi|212711935|ref|ZP_03320063.1| hypothetical protein PROVALCAL_03010 [Providencia alcalifaciens DSM
           30120]
 gi|212685457|gb|EEB44985.1| hypothetical protein PROVALCAL_03010 [Providencia alcalifaciens DSM
           30120]
          Length = 336

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 195/335 (58%), Positives = 252/335 (75%), Gaps = 2/335 (0%)

Query: 1   MMDREGLLSRNV--SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M++ + L++  V  S+E+A    +RP+ L+E+ GQ +    +++FI+AAK R +ALDH+L
Sbjct: 1   MIEADRLITAEVLHSEEEAIDRAIRPKLLDEYIGQPQVKHQMEIFIQAAKMRGDALDHLL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA +VA ELGVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS
Sbjct: 61  IFGPPGLGKTTLAGIVANELGVNLRTTSGPVLEKAGDLAAILTNLEPHDVLFIDEIHRLS 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            +VEEILYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  
Sbjct: 121 PVVEEILYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQ 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           RL FY+++DL+ IV+R A+  GL +T+E A ++AMRSRGTPRI  RLLRRVRDFA+V   
Sbjct: 181 RLEFYQVDDLQHIVKRSAQYMGLDITEEGALQVAMRSRGTPRITNRLLRRVRDFAQVKGN 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
            +I   IA  AL  L +D  GFD LD + L  I   F GGPVG++ ++A + E R+ IED
Sbjct: 241 GSIDELIASQALDMLNVDAAGFDYLDRKLLVAIIDKFMGGPVGVDNLAAAIGEERETIED 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           ++EPY+IQQGFIQRTPRGR+    A+ H G+    
Sbjct: 301 VLEPYLIQQGFIQRTPRGRMATAHAYLHFGLTPKE 335


>gi|261405409|ref|YP_003241650.1| Holliday junction DNA helicase RuvB [Paenibacillus sp. Y412MC10]
 gi|329926743|ref|ZP_08281151.1| Holliday junction DNA helicase RuvB [Paenibacillus sp. HGF5]
 gi|261281872|gb|ACX63843.1| Holliday junction DNA helicase RuvB [Paenibacillus sp. Y412MC10]
 gi|328938943|gb|EGG35311.1| Holliday junction DNA helicase RuvB [Paenibacillus sp. HGF5]
          Length = 335

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 195/333 (58%), Positives = 248/333 (74%), Gaps = 2/333 (0%)

Query: 2   MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD + ++S N+  ++  + L LRPR L E+ GQ +   NLKV+IEAAK R EALDHVL  
Sbjct: 1   MD-DRIISANLMMDEQAVELSLRPRYLAEYIGQNQVKENLKVYIEAAKMRNEALDHVLLY 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A ELGVN R+TSGP I + GDLAALLTNL++ DVLFIDEIHRL   
Sbjct: 60  GPPGLGKTTLANIIANELGVNLRTTSGPAIERPGDLAALLTNLQEGDVLFIDEIHRLHRT 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE++YPAMEDF LD+M+G+GPSARSV+++L  FTLI ATTR GLL+ PL+DRFG+  RL
Sbjct: 120 VEEVMYPAMEDFALDIMIGKGPSARSVRLDLPPFTLIGATTRAGLLSAPLRDRFGVVSRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY +++L  IV R A L G+ +  EAA EIA+RSRGTPRIA RLL+RVRD+A+V     
Sbjct: 180 EFYTVDELSYIVSRNADLLGIEILGEAAEEIALRSRGTPRIANRLLKRVRDYAQVRGDGM 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           IT  IA  AL  L ID MG D +D + L  + ++F GGPVG++TI+A + E    IED+ 
Sbjct: 240 ITPSIAQEALKMLQIDPMGLDFIDHKMLNAMIKSFRGGPVGLDTIAATIGEESQTIEDVY 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY++Q G++QRTPRGR++ P A+QHLGI  P 
Sbjct: 300 EPYLLQIGYLQRTPRGRVVTPTAYQHLGIPFPE 332


>gi|262394693|ref|YP_003286547.1| holliday junction DNA helicase RuvB [Vibrio sp. Ex25]
 gi|262338287|gb|ACY52082.1| holliday junction DNA helicase RuvB [Vibrio sp. Ex25]
          Length = 355

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 191/333 (57%), Positives = 248/333 (74%), Gaps = 3/333 (0%)

Query: 1   MMDREGLLSRNVS---QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M++ + L++        ED     +RP+ L ++ GQ      +++FI+AA+ R+EALDH+
Sbjct: 22  MIEADRLIAPENPAFRDEDVIDRAIRPKKLADYQGQDHVRDQMEIFIKAAQLRSEALDHL 81

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTLA +VA E+ VN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRL
Sbjct: 82  LIFGPPGLGKTTLANIVANEMEVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRL 141

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           S +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI 
Sbjct: 142 SPMVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIT 201

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            RL FY+I+DL+ IVQR A   GL++  E A E+A R+RGTPRIA RLLRRVRD+AEV  
Sbjct: 202 QRLEFYKIKDLQDIVQRSADCLGLSMEPEGALEVARRARGTPRIANRLLRRVRDYAEVKG 261

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
              I  E+AD AL  L +D  GFD +D + L  I   FGGGPVG++ ++A + E +D IE
Sbjct: 262 NGHICAEVADKALNMLDVDAEGFDYMDRKLLLAIMEKFGGGPVGLDNMAAAIGEEKDTIE 321

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           D++EPY+IQQG++QRTPRGR+    A+ H GI+
Sbjct: 322 DVLEPYLIQQGYLQRTPRGRIATDRAYLHFGIE 354


>gi|258626837|ref|ZP_05721644.1| Holliday junction DNA helicase RuvB [Vibrio mimicus VM603]
 gi|262165954|ref|ZP_06033691.1| holliday junction DNA helicase RuvB [Vibrio mimicus VM223]
 gi|258580884|gb|EEW05826.1| Holliday junction DNA helicase RuvB [Vibrio mimicus VM603]
 gi|262025670|gb|EEY44338.1| holliday junction DNA helicase RuvB [Vibrio mimicus VM223]
          Length = 334

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 185/333 (55%), Positives = 244/333 (73%), Gaps = 3/333 (0%)

Query: 1   MMDREGLLSR---NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M++ + L++        E+     +RP+ L ++ GQ      +++FI+AA+ R EALDH+
Sbjct: 1   MIEADRLIAPVNHTFKDEEVIDRAIRPKKLADYQGQDHVRDQMEIFIKAAQQRQEALDHL 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRL
Sbjct: 61  LIFGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           S +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI 
Sbjct: 121 SPMVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIV 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            RL +Y + DL+ IVQR A   GL++  E A E+A R+RGTPRIA RLLRRVRD+AEV  
Sbjct: 181 QRLEYYNVADLQNIVQRSAHCLGLSMDSEGALEVARRARGTPRIANRLLRRVRDYAEVKG 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
              I  + AD AL  L +D  GFD +D + L  I   F GGPVG++ ++A + E +D IE
Sbjct: 241 DGHICAQTADKALNMLDVDHQGFDYMDRKLLLAIMEKFSGGPVGLDNLAAAIGEEKDTIE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           D++EP++IQQG++QRTPRGR+    A+ H G++
Sbjct: 301 DVLEPFLIQQGYLQRTPRGRIATDRAYLHFGLE 333


>gi|229846400|ref|ZP_04466508.1| Holliday junction DNA helicase B [Haemophilus influenzae 7P49H1]
 gi|229810493|gb|EEP46211.1| Holliday junction DNA helicase B [Haemophilus influenzae 7P49H1]
 gi|309972528|gb|ADO95729.1| Holliday junction resolvasome, ATPase subunit [Haemophilus
           influenzae R2846]
          Length = 335

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 184/331 (55%), Positives = 243/331 (73%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + ++S      ED     +RP+ L ++ GQ +    + +FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRIISGQAKVDEDVIDRAIRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            +EE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ ATTR G LT+PL+DRFGI  R
Sbjct: 121 AIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY +EDL +IV R A    L +  +AA E+A RSRGTPRIA RLLRRVRD+A+V +  
Sbjct: 181 LEFYSVEDLTSIVARSAGCLNLELEQQAAFEVARRSRGTPRIANRLLRRVRDYADVRNGG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I+ E+A  AL  L +D  GFD LD + L+ +   F GGPVG++ ++A + E RD IED+
Sbjct: 241 VISVEVAKQALSMLDVDDAGFDYLDRKLLSAVIERFDGGPVGLDNLAAAIGEERDTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           +EPY+IQQGF+QRTPRGR+     ++H G+ 
Sbjct: 301 LEPYLIQQGFLQRTPRGRIATSQTYRHFGLQ 331


>gi|261364994|ref|ZP_05977877.1| holliday junction DNA helicase RuvB [Neisseria mucosa ATCC 25996]
 gi|288566579|gb|EFC88139.1| holliday junction DNA helicase RuvB [Neisseria mucosa ATCC 25996]
          Length = 343

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 196/329 (59%), Positives = 247/329 (75%), Gaps = 2/329 (0%)

Query: 5   EGLLSRNV--SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           + +++     SQE+     LRP+TL+++ GQ +A   L +FI+AAK R EALDH L  GP
Sbjct: 13  QRIITAQSISSQEELLERALRPKTLDDYIGQDKAKEQLAIFIQAAKKRGEALDHTLLFGP 72

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++A+ELGVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VE
Sbjct: 73  PGLGKTTLAHIIAKELGVNLRQTSGPVLERAGDLAALLTNLEPHDVLFIDEIHRLSPVVE 132

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILYPA+ED+QLD+M+GEGP+ARSVKI+L  FTL+ ATTR G+LTNPL+DRFGI  RL F
Sbjct: 133 EILYPALEDYQLDIMIGEGPAARSVKIDLPPFTLVGATTRAGMLTNPLRDRFGIVARLEF 192

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y+ +DL TIV R A+L  L + DE A E+A RSRGTPRIA RLLRRVRDFA+V +   I 
Sbjct: 193 YQNQDLATIVSRSAQLLQLDMGDEGAMEVAKRSRGTPRIANRLLRRVRDFADVKNNGVID 252

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             +ADAAL  L +D  G D +D ++L  I   F GGPVG++ ++A + E  D IED+IEP
Sbjct: 253 AAVADAALSMLDVDAQGLDVMDRKFLEAILHKFSGGPVGLDNVAAAIGESTDTIEDVIEP 312

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           Y+IQQGF+QRTPRGR+    A+ H G+ +
Sbjct: 313 YLIQQGFLQRTPRGRMATERAYLHFGLKM 341


>gi|162421002|ref|YP_001606842.1| Holliday junction DNA helicase RuvB [Yersinia pestis Angola]
 gi|238687247|sp|A9QYX2|RUVB_YERPG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|162353817|gb|ABX87765.1| Holliday junction DNA helicase RuvB [Yersinia pestis Angola]
          Length = 334

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 192/331 (58%), Positives = 245/331 (74%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S  V + E++    +RP+ L E+ GQ      +++FI+AAK R +ALDHVL 
Sbjct: 1   MIEADRLISAAVINDEESIDRAIRPKLLTEYVGQPHVREQMEIFIQAAKQRGDALDHVLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIIANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY + DL+ IV R AK  GL +T E A ++A RSRGTPRI  RLLRRVRDFAEV    
Sbjct: 181 LEFYPVADLEHIVSRSAKCLGLELTPEGAHQLARRSRGTPRITNRLLRRVRDFAEVRADG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  E+A  AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 AINGEVAMKALDMLNVDAEGFDFMDRKLLLAVIDKFMGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           +EPY+IQQGFIQRTPRGR+    A++H GI 
Sbjct: 301 LEPYLIQQGFIQRTPRGRIATNHAYKHFGIT 331


>gi|323495171|ref|ZP_08100256.1| Holliday junction DNA helicase RuvB [Vibrio brasiliensis LMG 20546]
 gi|323310611|gb|EGA63790.1| Holliday junction DNA helicase RuvB [Vibrio brasiliensis LMG 20546]
          Length = 334

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 190/333 (57%), Positives = 249/333 (74%), Gaps = 3/333 (0%)

Query: 1   MMDREGLLSRNVS---QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M++ + L++ + +   +ED     +RP+ L ++ GQ      +++FI+AA+ R EALDH+
Sbjct: 1   MIEADRLIAPDNAVYKEEDVIDRAIRPKKLADYQGQDHVRDQMEIFIKAAQLRNEALDHL 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTLA +VA E+ VN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRL
Sbjct: 61  LIFGPPGLGKTTLANIVANEMDVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           S +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI 
Sbjct: 121 SPMVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIT 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            RL +Y+I DL+ IVQR A   GL++  E A E+A R+RGTPRIA RLLRRVRD+AEV  
Sbjct: 181 QRLEYYKIPDLQNIVQRSADCLGLSMESEGALEVARRARGTPRIANRLLRRVRDYAEVKG 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
              I  E+AD AL  L +D  GFD +D + L  I   FGGGPVG++ ++A + E +D IE
Sbjct: 241 NGHICAEVADKALNMLDVDAQGFDYMDRKLLLAIMEKFGGGPVGLDNMAAAIGEEKDTIE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           D++EPY+IQQG++QRTPRGR+    A+ H GI+
Sbjct: 301 DVLEPYLIQQGYLQRTPRGRIATDRAYLHFGIE 333


>gi|300717083|ref|YP_003741886.1| Holliday junction ATP-dependent DNA helicase [Erwinia billingiae
           Eb661]
 gi|299062919|emb|CAX60039.1| Holliday junction ATP-dependent DNA helicase [Erwinia billingiae
           Eb661]
          Length = 334

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 191/330 (57%), Positives = 253/330 (76%), Gaps = 1/330 (0%)

Query: 1   MMDREGLLSR-NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S   +++E+     +RP+ L+E+ GQ      +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRLVSPGTITEEEVIDRAIRPKLLQEYVGQPVVREQMEIFIQAAKMRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++EDL+ IV R A   GL ++DE A EIA R+RGTPRIA RLLRRVRDF+EV  A 
Sbjct: 181 LEFYKVEDLRHIVSRSAACLGLPLSDEGALEIARRARGTPRIANRLLRRVRDFSEVRAAG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           +++ ++A  AL  L++D  GFD +D + L  I   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 SLSGDVASRALDMLSVDTEGFDYMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           +EPY+IQQGFIQRTPRGR+    A++H GI
Sbjct: 301 LEPYLIQQGFIQRTPRGRMATNHAYKHFGI 330


>gi|307730948|ref|YP_003908172.1| Holliday junction DNA helicase RuvB [Burkholderia sp. CCGE1003]
 gi|307585483|gb|ADN58881.1| Holliday junction DNA helicase RuvB [Burkholderia sp. CCGE1003]
          Length = 354

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 194/331 (58%), Positives = 246/331 (74%), Gaps = 2/331 (0%)

Query: 5   EGLLSRNV--SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           E +++       E+A    LRPR LEE+ GQ +    L++FIEAA+ R+E+LDHVL  GP
Sbjct: 10  ERIIAATPVSPNEEAFERALRPRQLEEYVGQEKVRGQLEIFIEAARRRSESLDHVLLFGP 69

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++ARE+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VE
Sbjct: 70  PGLGKTTLAHIIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVE 129

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILYPA+ED+Q+D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL F
Sbjct: 130 EILYPALEDYQIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEF 189

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  E+L  IV R A L    +  + A EIA R+RGTPRIA RLLRRVRDFAEV     IT
Sbjct: 190 YNAEELARIVTRSASLLNAQIHPDGAFEIARRARGTPRIANRLLRRVRDFAEVKADGNIT 249

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            ++ADAAL  L +D +GFD +D + L  I   F GGPVG++ ++A + E RD IED++EP
Sbjct: 250 AQVADAALSMLDVDPVGFDLMDRKLLEAILHKFDGGPVGVDNLAAAIGEERDTIEDVLEP 309

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           Y+IQQGF+QRTPRGR+   + ++H G+  P 
Sbjct: 310 YLIQQGFLQRTPRGRVATLLTYRHFGLAAPD 340


>gi|294141121|ref|YP_003557099.1| Holliday junction DNA helicase RuvB [Shewanella violacea DSS12]
 gi|293327590|dbj|BAJ02321.1| Holliday junction DNA helicase RuvB [Shewanella violacea DSS12]
          Length = 339

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 195/337 (57%), Positives = 249/337 (73%), Gaps = 4/337 (1%)

Query: 1   MMDREGLLSRNVSQ----EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH 56
           M++ + ++          E+     +RP+ L+E+TGQ    + LKVFI+AA+ R EALDH
Sbjct: 1   MIEADRIIHAEPQGVEAYEEQIDRAMRPKLLDEYTGQDATRAQLKVFIQAAQNRGEALDH 60

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHR 116
           +L  GPPGLGKTTLA +VA E+GVN +STSGPV+ KAGDLAALLTNLE  DVLFIDEIHR
Sbjct: 61  MLIYGPPGLGKTTLALIVANEMGVNIKSTSGPVLEKAGDLAALLTNLEPGDVLFIDEIHR 120

Query: 117 LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
           LS +VEEILYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+ RFGI
Sbjct: 121 LSPVVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGALTSPLRARFGI 180

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
           P+RL FY ++DL TIV R AK+  L + DE + E+A RSRGTPRIA RLLRRVRD+AEV 
Sbjct: 181 PLRLEFYNVKDLSTIVTRSAKVLELPIDDEGSLEVARRSRGTPRIANRLLRRVRDYAEVK 240

Query: 237 HAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAI 296
           H   I + +AD AL  L +D  GFD +D + +  I   F GGPVG++ ++A + E R+ I
Sbjct: 241 HDGEINKRVADLALEMLDVDVEGFDYMDRKLMLAIIDKFMGGPVGLDNLAAAIGEERETI 300

Query: 297 EDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           ED++EP++IQQGFIQRTPRGR+    A+QH  I  P 
Sbjct: 301 EDVLEPFLIQQGFIQRTPRGRIATQRAYQHFNIIQPE 337


>gi|254228969|ref|ZP_04922390.1| holliday junction DNA helicase RuvB [Vibrio sp. Ex25]
 gi|151938437|gb|EDN57274.1| holliday junction DNA helicase RuvB [Vibrio sp. Ex25]
          Length = 361

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 191/333 (57%), Positives = 248/333 (74%), Gaps = 3/333 (0%)

Query: 1   MMDREGLLSRNVS---QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M++ + L++        ED     +RP+ L ++ GQ      +++FI+AA+ R+EALDH+
Sbjct: 28  MIEADRLIAPENPAFRDEDVIDRAIRPKKLADYQGQDHVRDQMEIFIKAAQLRSEALDHL 87

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTLA +VA E+ VN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRL
Sbjct: 88  LIFGPPGLGKTTLANIVANEMEVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRL 147

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           S +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI 
Sbjct: 148 SPMVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIT 207

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            RL FY+I+DL+ IVQR A   GL++  E A E+A R+RGTPRIA RLLRRVRD+AEV  
Sbjct: 208 QRLEFYKIKDLQDIVQRSADCLGLSMEPEGALEVARRARGTPRIANRLLRRVRDYAEVKG 267

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
              I  E+AD AL  L +D  GFD +D + L  I   FGGGPVG++ ++A + E +D IE
Sbjct: 268 NGHICAEVADKALNMLDVDAEGFDYMDRKLLLAIMEKFGGGPVGLDNMAAAIGEEKDTIE 327

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           D++EPY+IQQG++QRTPRGR+    A+ H GI+
Sbjct: 328 DVLEPYLIQQGYLQRTPRGRIATDRAYLHFGIE 360


>gi|157962183|ref|YP_001502217.1| Holliday junction DNA helicase RuvB [Shewanella pealeana ATCC
           700345]
 gi|189046050|sp|A8H545|RUVB_SHEPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|157847183|gb|ABV87682.1| Holliday junction DNA helicase RuvB [Shewanella pealeana ATCC
           700345]
          Length = 337

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 199/335 (59%), Positives = 255/335 (76%), Gaps = 3/335 (0%)

Query: 1   MMDREGLLSRNVSQEDADIS---LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M++ + L+  N+ + D   +    +RP+ L+E+TGQ +  + LK+FI+AA+ R EALDH+
Sbjct: 1   MIEADRLIQPNIIERDEIEAVDRAMRPKMLDEYTGQDDTRAQLKIFIQAAQKRGEALDHM 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTLA +VA E+GVN +STSGPV+ KAGDLAALLTNLE  DVLFIDEIHRL
Sbjct: 61  LIYGPPGLGKTTLAMIVANEMGVNIKSTSGPVLEKAGDLAALLTNLEPNDVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           S +VEEILYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ ATTR G LT+PL+ RFGIP
Sbjct: 121 SPVVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGALTSPLRARFGIP 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
           +RL FY ++DL +IV R AK+  LA+ DE A EIA RSRGTPRIA RLLRRVRDFAEV H
Sbjct: 181 LRLEFYNVKDLSSIVTRSAKVMDLAIDDEGAIEIARRSRGTPRIANRLLRRVRDFAEVKH 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
              +T+ IA+ AL  L +D  GFD +D + L  I   F GGPVG++ ++A + E R+ IE
Sbjct: 241 RGEVTKIIAEEALDMLDVDAEGFDYMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETIE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           D++EP++IQQGFIQRTPRGR+  P A+ H  I  P
Sbjct: 301 DVLEPFLIQQGFIQRTPRGRIATPRAYSHFNIIQP 335


>gi|183599001|ref|ZP_02960494.1| hypothetical protein PROSTU_02445 [Providencia stuartii ATCC 25827]
 gi|188021216|gb|EDU59256.1| hypothetical protein PROSTU_02445 [Providencia stuartii ATCC 25827]
          Length = 336

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 191/335 (57%), Positives = 249/335 (74%), Gaps = 2/335 (0%)

Query: 1   MMDREGLLSRNV--SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M++ + L+S  V   +E+A    +RP+ L E+ GQ +    +++FI+AAK R +ALDH+L
Sbjct: 1   MIEADRLISAEVIHDEEEAIDRAIRPKLLNEYIGQPQVKEQMEIFIQAAKLRGDALDHLL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS
Sbjct: 61  IFGPPGLGKTTLAGIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLS 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            +VEEILYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  
Sbjct: 121 PVVEEILYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQ 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           RL FY ++DL+ IV+R A+  G+ +++E A ++AMRSRGTPRI  RLLRRVRDFA+V   
Sbjct: 181 RLEFYNVDDLQYIVKRSAQFMGVEISEEGARQVAMRSRGTPRITNRLLRRVRDFAQVKGD 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
            +I   IA  AL  L +D  GFD LD + L  I   F GGPVG++ ++A + E R+ IED
Sbjct: 241 GSINELIASQALDMLNVDAAGFDYLDRKLLVAIIDKFMGGPVGVDNLAAAIGEERETIED 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           ++EP++IQQGFIQRTPRGR+    A+ H G+    
Sbjct: 301 VLEPFLIQQGFIQRTPRGRMATAHAYLHFGLTPKE 335


>gi|90411665|ref|ZP_01219675.1| Holliday junction DNA helicase RuvB [Photobacterium profundum 3TCK]
 gi|90327555|gb|EAS43908.1| Holliday junction DNA helicase RuvB [Photobacterium profundum 3TCK]
          Length = 337

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 189/335 (56%), Positives = 245/335 (73%), Gaps = 2/335 (0%)

Query: 1   MMDREGLLSR--NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M++ + L+S       ++     +RP+ L ++ GQ      +++FI+AA+ R EALDH+L
Sbjct: 1   MIEADRLISNSFESRDDEVIDRAIRPKLLNDYQGQDHVRGQMEIFIKAAQLRDEALDHLL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA +VA E+GV+ R+TSGPV+ KAGDLAALLTNLE  DVLFIDEIHRLS
Sbjct: 61  IFGPPGLGKTTLANIVANEMGVSIRTTSGPVLEKAGDLAALLTNLEPNDVLFIDEIHRLS 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
             VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  
Sbjct: 121 PHVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGITQ 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           RL +Y++ DLK IVQR A   GL++ +E A E+A R+RGTPRIA RLLRRVRD+AEV   
Sbjct: 181 RLEYYKVGDLKDIVQRSADCLGLSMEEEGALEMAHRARGTPRIANRLLRRVRDYAEVVGN 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             I  + A  AL  L +D  GFD +D + L  I   F GGPVG++ ++A + E +D IED
Sbjct: 241 GIICADTAKKALDMLDVDSSGFDYMDRKLLLAIIDKFMGGPVGLDNLAAAIGEEKDTIED 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           ++EPY+IQQGF+QRTPRGR+    A+ H G+DIP 
Sbjct: 301 VLEPYLIQQGFLQRTPRGRIATHRAYLHFGLDIPE 335


>gi|293395810|ref|ZP_06640092.1| crossover junction endoribonuclease subunit B [Serratia odorifera
           DSM 4582]
 gi|291421747|gb|EFE94994.1| crossover junction endoribonuclease subunit B [Serratia odorifera
           DSM 4582]
          Length = 334

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 190/331 (57%), Positives = 250/331 (75%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSRN-VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S   +++E+     +RP+ L E+ GQ      +++FI+AAK R++ALDH+L 
Sbjct: 1   MIEADRLISAEPITEEEVIDRAIRPKLLTEYVGQPHVREQMEIFIQAAKQRSDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IV R A   GL+++ E + EIA R+RGTPRIA RLLRRVRDFAEV    
Sbjct: 181 LEFYQVADLEHIVSRSAHCLGLSLSTEGSHEIARRARGTPRIANRLLRRVRDFAEVRANG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I+ E+A  AL  L +D  GFD +D + L  I   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 QISGEVAAQALNMLNVDAEGFDYMDRKLLLAIIDKFTGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           IEP++IQQGFIQRTPRGR+    A++H GI+
Sbjct: 301 IEPFLIQQGFIQRTPRGRMATLHAYKHFGIE 331


>gi|325981223|ref|YP_004293625.1| Holliday junction DNA helicase RuvB [Nitrosomonas sp. AL212]
 gi|325530742|gb|ADZ25463.1| Holliday junction DNA helicase RuvB [Nitrosomonas sp. AL212]
          Length = 348

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 194/332 (58%), Positives = 247/332 (74%), Gaps = 2/332 (0%)

Query: 1   MMDREGLLSR--NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M++ + L++   + SQE+     LRP  L+E+ GQ +    L++FIEAA+ R EALDHVL
Sbjct: 1   MIETDRLITAISSSSQEEILERALRPTQLDEYVGQEKIRGQLQIFIEAARNRREALDHVL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA ++ARE+GVN R TSGPV+ + GDLAALLTNLE  DVLFIDEIHRLS
Sbjct: 61  LFGPPGLGKTTLAHIIAREMGVNLRQTSGPVLERPGDLAALLTNLEPNDVLFIDEIHRLS 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            IVEEILYPA+ED+QLD+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  
Sbjct: 121 PIVEEILYPALEDYQLDIMIGEGPAARSVKLDLPSFTLVGATTRAGMLTNPLRDRFGIVS 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           RL FY  E+L  IV R A L  + ++ + A EIA RSRGTPRI  RLLRRVRD+A+V   
Sbjct: 181 RLEFYTSEELGKIVTRSAGLLKVEISSDGALEIACRSRGTPRIVNRLLRRVRDYAQVKAD 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             ITR +ADAAL  L +D +G D +D + L  +   F GGPVG++ ++A +SE RD IED
Sbjct: 241 GHITRLVADAALSMLDVDAIGLDVMDRKLLLAVLEKFSGGPVGVDNLAAAISEERDTIED 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           ++EPY+IQQGF++RT RGR+    A+QH GI 
Sbjct: 301 VLEPYLIQQGFLKRTARGRVATTAAYQHFGIA 332


>gi|127513003|ref|YP_001094200.1| Holliday junction DNA helicase B [Shewanella loihica PV-4]
 gi|166231554|sp|A3QEP3|RUVB_SHELP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|126638298|gb|ABO23941.1| Holliday junction DNA helicase RuvB [Shewanella loihica PV-4]
          Length = 337

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 193/337 (57%), Positives = 250/337 (74%), Gaps = 4/337 (1%)

Query: 1   MMDREGLLSRNVS----QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH 56
           M++ + L+         +++     +RP+ L+E+TGQ +  + LKVFIEAA+ R EALDH
Sbjct: 1   MIEADRLVHAQPQGTEERDEQIDRAMRPKLLDEYTGQDDTRAQLKVFIEAAQKRGEALDH 60

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHR 116
           +L  GPPGLGKTTLA +VA E+GVN +STSGPV+ KAGDLAALLTNLE  DVLFIDEIHR
Sbjct: 61  MLIYGPPGLGKTTLAMIVANEMGVNIKSTSGPVLEKAGDLAALLTNLEAGDVLFIDEIHR 120

Query: 117 LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
           LS +VEEILYPAMED+QLD+M+GEGP+ARS+K+ L  FTLI ATTR G LT+PL+ RFGI
Sbjct: 121 LSPVVEEILYPAMEDYQLDIMIGEGPAARSIKLELPPFTLIGATTRAGALTSPLRARFGI 180

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
           P+RL FY ++DL +IV R AK+  L +  E A E+A RSRGTPRIA RLLRRVRD+AEV 
Sbjct: 181 PLRLEFYNVKDLSSIVTRSAKVLELPIDQEGAVEVARRSRGTPRIANRLLRRVRDYAEVK 240

Query: 237 HAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAI 296
           H   + + +A++AL  L +D  GFD +D + L  I   F GGPVG++ ++A + E R+ I
Sbjct: 241 HDGEVNKVVAESALDMLDVDVEGFDYMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETI 300

Query: 297 EDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           ED++EP++IQQGFIQRTPRGR+    A+QH  +  P 
Sbjct: 301 EDVLEPFLIQQGFIQRTPRGRIATARAYQHFNLIQPE 337


>gi|320155873|ref|YP_004188252.1| Holliday junction DNA helicase RuvB [Vibrio vulnificus MO6-24/O]
 gi|326423954|ref|NP_761018.2| Holliday junction DNA helicase RuvB [Vibrio vulnificus CMCP6]
 gi|319931185|gb|ADV86049.1| holliday junction DNA helicase RuvB [Vibrio vulnificus MO6-24/O]
 gi|319999332|gb|AAO10545.2| Holliday junction DNA helicase RuvB [Vibrio vulnificus CMCP6]
          Length = 334

 Score =  379 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 191/333 (57%), Positives = 247/333 (74%), Gaps = 3/333 (0%)

Query: 1   MMDREGLLSRNVS---QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M++ + L++ +      ED     +RP+ L ++ GQ      +++FI+AA+ R EALDH+
Sbjct: 1   MIEADRLIAPDNPAFRDEDVIDRAIRPKKLADYQGQDHVRDQMEIFIKAAQLRNEALDHL 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRL
Sbjct: 61  LIFGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           S +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI 
Sbjct: 121 SPMVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIT 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            RL +Y+I DL+ IVQR A   GL++  E A E+A R+RGTPRIA RLLRRVRDFAEV  
Sbjct: 181 QRLEYYKIPDLQNIVQRSADCLGLSMEAEGALEVARRARGTPRIANRLLRRVRDFAEVKG 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
              I  + AD AL  L +D  GFD +D + L  I   FGGGPVG++ ++A + E +D IE
Sbjct: 241 NGHICADTADKALNMLDVDSKGFDYMDRKLLLAIMEKFGGGPVGLDNMAAAIGEEKDTIE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           D++EPY+IQQG++QRTPRGR+    A+ H GI+
Sbjct: 301 DVLEPYLIQQGYLQRTPRGRIATDRAYLHFGIE 333


>gi|270156710|ref|ZP_06185367.1| Holliday junction DNA helicase RuvB [Legionella longbeachae D-4968]
 gi|289164842|ref|YP_003454980.1| Holliday junction DNA helicase RuvB [Legionella longbeachae NSW150]
 gi|269988735|gb|EEZ94989.1| Holliday junction DNA helicase RuvB [Legionella longbeachae D-4968]
 gi|288858015|emb|CBJ11875.1| putative Holliday junction DNA helicase RuvB [Legionella
           longbeachae NSW150]
          Length = 338

 Score =  379 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 182/332 (54%), Positives = 244/332 (73%), Gaps = 1/332 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + ++S   +  ++     +RP +L E+ GQ    S +++FI+AAK R++ALDHVL 
Sbjct: 1   MLESDRIISTQSNVSDEVIDRAIRPLSLREYIGQENVSSQMQIFIDAAKKRSDALDHVLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A E+GVN R TSGPVI +AGD+AA+LTNL++ D+LFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIIAHEMGVNLRQTSGPVIERAGDIAAILTNLQENDILFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           ++EE+LYPAMED++LD+M+GEGP+ARS+K+ L  FTLI ATTR GLLT+PL+DRFGI  R
Sbjct: 121 VIEEVLYPAMEDYKLDIMIGEGPAARSIKLELPPFTLIGATTRAGLLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y ++ L  IV R A+L  +    E A EIA+RSRGTPRIA RLLRRVRD+AEV    
Sbjct: 181 LEYYSVDSLTKIVARSAQLLNVKTQPEGAREIALRSRGTPRIANRLLRRVRDYAEVKGGG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  E+A  AL  L +DK GFD +D + L  +   F GGPVGI++I+A + E +  IED+
Sbjct: 241 IINIEVAQKALEMLDVDKYGFDLMDRKLLMAVIEQFSGGPVGIDSIAAAIGEEKGTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           +EP++IQQGF+ RTPRGR+    A+ H GI I
Sbjct: 301 LEPFLIQQGFLMRTPRGRIATRRAYMHFGIAI 332


>gi|291617753|ref|YP_003520495.1| RuvB [Pantoea ananatis LMG 20103]
 gi|291152783|gb|ADD77367.1| RuvB [Pantoea ananatis LMG 20103]
          Length = 334

 Score =  379 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 190/331 (57%), Positives = 253/331 (76%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSR-NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S  ++++E+     +RP+ L E+ GQ +    +++FI+AA+ R +ALDH+L 
Sbjct: 1   MIEADRLISAASINEEEGLDRAIRPKMLTEYVGQPQVREQMEIFIKAAQLRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY+++DL+ IV R A   GLA+++EAA EIA RSRGTPRIA RLLRRVRDFAEV    
Sbjct: 181 LEFYQVKDLQHIVGRSAACLGLALSEEAALEIARRSRGTPRIANRLLRRVRDFAEVRANG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            ++ +++  AL  L +D  GFD +D + L  I   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 VLSGDVSVTALDMLNVDSEGFDYMDRKLLLAIIDKFTGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           IEP++IQQGFIQRTPRGR+    A++H GI 
Sbjct: 301 IEPFLIQQGFIQRTPRGRMATQHAYRHFGIT 331


>gi|326390113|ref|ZP_08211674.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter ethanolicus
           JW 200]
 gi|325993761|gb|EGD52192.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 338

 Score =  379 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 178/331 (53%), Positives = 243/331 (73%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
            E +L+++ +QEDA    LRPR L E+ GQ +    LK++IEAAK R E LDHVL  GPP
Sbjct: 2   EERILTQSFTQEDASEYSLRPRWLSEYIGQQKIKEELKIYIEAAKMRKEPLDHVLLYGPP 61

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA V++ E+GV  + TSGP I K+ DLAA+LTNL++ D+LFIDEIHRL+  VEE
Sbjct: 62  GLGKTTLATVISNEMGVGIKITSGPAIEKSRDLAAILTNLQENDILFIDEIHRLNRSVEE 121

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILYPAMEDF+LD+++G+GPSARS++++L RFTLI ATTR  L+T+PL+DRFG+  RL++Y
Sbjct: 122 ILYPAMEDFELDIVIGKGPSARSIRLSLPRFTLIGATTRAALMTSPLRDRFGVINRLDYY 181

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            +E+LK I++R A +  + + ++AA EIA RSRGTPRIA RLL+RVRDFA+V     I  
Sbjct: 182 SVEELKEIIKRSANILNIGIDEDAALEIAKRSRGTPRIANRLLKRVRDFAQVRGNGYIDF 241

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           + +  AL  L +D+MG + +D + L  I   FGGGPVGI+ I+A + E  D IED+ EPY
Sbjct: 242 KTSKEALDVLGVDEMGLEYIDRKILVSIIEKFGGGPVGIDAIAASIGEDGDTIEDVYEPY 301

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           ++Q GF+ RTPRGR++  +A+ +L      +
Sbjct: 302 LLQIGFLNRTPRGRVVTKLAYDYLKYPYIEQ 332


>gi|304396234|ref|ZP_07378116.1| Holliday junction DNA helicase RuvB [Pantoea sp. aB]
 gi|304356603|gb|EFM20968.1| Holliday junction DNA helicase RuvB [Pantoea sp. aB]
          Length = 334

 Score =  379 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 191/331 (57%), Positives = 253/331 (76%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSR-NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S  ++S+E+     +RP+ L E+ GQ +    +++FI+AA+ R +ALDH+L 
Sbjct: 1   MIEADRLISAASISEEEVIDRAIRPKMLTEYVGQPQVREQMEIFIKAAQLRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY+++DL+ IV R A   GLA++DE A EIA R+RGTPRIA RLLRRVRDFAEV    
Sbjct: 181 LEFYQVKDLQHIVGRSAACLGLALSDEGALEIARRARGTPRIANRLLRRVRDFAEVRANG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            ++ E++ +AL  L +D  GFD +D + L  I   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 DLSGEVSCSALDMLNVDSEGFDYMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           IEP++IQQGFIQRTPRGR+    A++H G+ 
Sbjct: 301 IEPFLIQQGFIQRTPRGRMATQHAYRHFGMT 331


>gi|167759025|ref|ZP_02431152.1| hypothetical protein CLOSCI_01372 [Clostridium scindens ATCC 35704]
 gi|167663432|gb|EDS07562.1| hypothetical protein CLOSCI_01372 [Clostridium scindens ATCC 35704]
          Length = 335

 Score =  379 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 173/329 (52%), Positives = 243/329 (73%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M R  + + N+ ++    + LRP+ LE++ GQ +A   LK++IEAAKAR EALDHVLF G
Sbjct: 1   MSRRIITTENLEEDIKIENHLRPQMLEDYIGQEKAKETLKIYIEAAKARGEALDHVLFYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+ VN + TSGP I K G++AA+L NL++ DVLF+DEIHRL+  V
Sbjct: 61  PPGLGKTTLAGIIANEMNVNIKITSGPAIEKPGEMAAILNNLQEGDVLFVDEIHRLNRQV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMED+ +D+M+G+G SARS++++L +FTL+ ATTR G+LT PL+DRFG+  R+ 
Sbjct: 121 EEVLYPAMEDYAIDIMIGKGASARSIRLDLPKFTLVGATTRAGMLTAPLRDRFGVVNRME 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY + +LKTI+ R A++  + + +  A  +A RSRGTPR+A RLL+RVRDFA+V +   I
Sbjct: 181 FYTVGELKTIILRSARVLEVGIDERGAYALARRSRGTPRLANRLLKRVRDFAQVKYDGYI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T E+A+ AL  L +DK G DQ D   L ++   F GGPVG++T++A + E    IED+ E
Sbjct: 241 TEEVANYALDLLDVDKEGLDQTDRGLLLIMIEKFQGGPVGLDTLAAAIGEDAGTIEDVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           PY+++ GFIQRTPRGR++   A++HLGI 
Sbjct: 301 PYLLKNGFIQRTPRGRVVTDSAYRHLGIS 329


>gi|37680468|ref|NP_935077.1| Holliday junction DNA helicase B [Vibrio vulnificus YJ016]
 gi|44888370|sp|Q7MJ78|RUVB_VIBVY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|37199216|dbj|BAC95048.1| holliday junction resolvasome, helicase subunit [Vibrio vulnificus
           YJ016]
          Length = 334

 Score =  379 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 191/333 (57%), Positives = 246/333 (73%), Gaps = 3/333 (0%)

Query: 1   MMDREGLLSRNVS---QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M++ + L++        ED     +RP+ L ++ GQ      +++FI+AA+ R EALDH+
Sbjct: 1   MIEADRLIAPENPAFRDEDVIDRAIRPKKLADYQGQDHVRDQMEIFIKAAQLRNEALDHL 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRL
Sbjct: 61  LIFGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           S +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI 
Sbjct: 121 SPMVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIT 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            RL +Y+I DL+ IVQR A   GL++  E A E+A R+RGTPRIA RLLRRVRDFAEV  
Sbjct: 181 QRLEYYKIPDLQNIVQRSADCLGLSMEAEGALEVARRARGTPRIANRLLRRVRDFAEVKG 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
              I  + AD AL  L +D  GFD +D + L  I   FGGGPVG++ ++A + E +D IE
Sbjct: 241 NGHICADTADKALNMLDVDSKGFDYMDRKLLLAIMEKFGGGPVGLDNMAAAIGEEKDTIE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           D++EPY+IQQG++QRTPRGR+    A+ H GI+
Sbjct: 301 DVLEPYLIQQGYLQRTPRGRIATDRAYLHFGIE 333


>gi|163942170|ref|YP_001647054.1| Holliday junction DNA helicase B [Bacillus weihenstephanensis
           KBAB4]
 gi|229013637|ref|ZP_04170768.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus
           mycoides DSM 2048]
 gi|229062115|ref|ZP_04199440.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           AH603]
 gi|229076051|ref|ZP_04209022.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           Rock4-18]
 gi|229098894|ref|ZP_04229830.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           Rock3-29]
 gi|229105058|ref|ZP_04235710.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           Rock3-28]
 gi|229117920|ref|ZP_04247282.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           Rock1-3]
 gi|229135244|ref|ZP_04264042.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           BDRD-ST196]
 gi|229169163|ref|ZP_04296878.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           AH621]
 gi|229470532|sp|A9VIP6|RUVB_BACWK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|163864367|gb|ABY45426.1| Holliday junction DNA helicase RuvB [Bacillus weihenstephanensis
           KBAB4]
 gi|228614391|gb|EEK71501.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           AH621]
 gi|228648222|gb|EEL04259.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           BDRD-ST196]
 gi|228665577|gb|EEL21057.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           Rock1-3]
 gi|228678368|gb|EEL32593.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           Rock3-28]
 gi|228684567|gb|EEL38509.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           Rock3-29]
 gi|228707085|gb|EEL59287.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           Rock4-18]
 gi|228717267|gb|EEL68942.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           AH603]
 gi|228747696|gb|EEL97568.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus
           mycoides DSM 2048]
          Length = 333

 Score =  379 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 189/333 (56%), Positives = 244/333 (73%), Gaps = 2/333 (0%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD E LLS     EDAD+   LRP+TL ++ GQ +A  NL+VFIEAAK R E LDHVL  
Sbjct: 1   MD-ERLLSGESGYEDADLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLLY 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT L+  DVLFIDEIHRL   
Sbjct: 60  GPPGLGKTTLANIIANEMGVNIRTTSGPAIERPGDLAAVLTALQPGDVLFIDEIHRLHRS 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EE+LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTR G L+ PL+DRFG+  RL
Sbjct: 120 IEEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y ++ L  IV+R A++  + +   AA EIA R+RGTPRIA RLLRRVRDFA+V    T
Sbjct: 180 EYYTVDQLSAIVERTAEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRSDGT 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I  EI   AL  L +DK+G D +D + L  I   F GGPVG+ET+SA + E    IED+ 
Sbjct: 240 IAMEITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSATIGEESHTIEDVY 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY++Q GF+QRTPRGR++ P+A++H G+++P 
Sbjct: 300 EPYLLQIGFLQRTPRGRIVTPLAYEHFGMEMPK 332


>gi|299067940|emb|CBJ39154.1| ATP-dependent DNA helicase, subunit B of RuvABC Holliday junction
           resolvasome [Ralstonia solanacearum CMR15]
          Length = 357

 Score =  379 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 195/331 (58%), Positives = 242/331 (73%), Gaps = 2/331 (0%)

Query: 5   EGLLS--RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           E L+S       E+A    LRP+ L+E+ GQ +    L +F+ AAK R EALDHVL  GP
Sbjct: 15  ERLISASPASPNEEAFERALRPKLLDEYVGQEKVRGQLDIFMTAAKRRREALDHVLLFGP 74

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++ARE+GVN R TSGPV+ + GDLAALLTNLE  DVLFIDEIHRLS +VE
Sbjct: 75  PGLGKTTLAHIIAREMGVNLRQTSGPVLERPGDLAALLTNLEANDVLFIDEIHRLSPVVE 134

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILYPA+ED+Q+D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL F
Sbjct: 135 EILYPALEDYQIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEF 194

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y   +L  IV R A L    + ++ A EIA RSRGTPRIA RLLRRVRD+AEV     IT
Sbjct: 195 YTPTELARIVTRSAGLLDARIAEDGALEIAKRSRGTPRIANRLLRRVRDYAEVKADGVIT 254

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           R +ADAAL  L +D +GFD +D + L  I   F GGPVGI+ ++A + E RD IED++EP
Sbjct: 255 RAVADAALAMLDVDAVGFDLMDRKLLEAILHKFNGGPVGIDNLAAAIGEERDTIEDVLEP 314

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           Y+IQQG++QRTPRGR+    A+QH G+  P 
Sbjct: 315 YLIQQGYLQRTPRGRVATASAYQHFGLGAPK 345


>gi|262404189|ref|ZP_06080744.1| holliday junction DNA helicase RuvB [Vibrio sp. RC586]
 gi|262349221|gb|EEY98359.1| holliday junction DNA helicase RuvB [Vibrio sp. RC586]
          Length = 334

 Score =  379 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 185/333 (55%), Positives = 245/333 (73%), Gaps = 3/333 (0%)

Query: 1   MMDREGLLSR---NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M++ + L++    +   E+     +RP+ L ++ GQ      +++FI+AA+ R EALDH+
Sbjct: 1   MIEADRLIAPVNHSFKDEEVIDRAIRPKKLADYQGQDHVRDQMEIFIKAAQQREEALDHL 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRL
Sbjct: 61  LIFGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           S +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI 
Sbjct: 121 SPMVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIV 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            RL +Y + DL+ IVQR A   GL++  E A E+A R+RGTPRIA RLLRRVRD+AEV  
Sbjct: 181 QRLEYYNVADLQNIVQRSAHCLGLSMDSEGALEVARRARGTPRIANRLLRRVRDYAEVKG 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
              I  + AD AL  L +D  GFD +D + L  I   F GGPVG++ ++A + E +D IE
Sbjct: 241 DGHICAQTADKALNMLDVDHQGFDYMDRKLLLAIMEKFSGGPVGLDNLAAAIGEEKDTIE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           D++EP++IQQG++QRTPRGR+    A+ H G++
Sbjct: 301 DVLEPFLIQQGYLQRTPRGRIATDRAYLHFGLE 333


>gi|187479253|ref|YP_787278.1| Holliday junction DNA helicase RuvB [Bordetella avium 197N]
 gi|97189925|sp|Q2KVY2|RUVB_BORA1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|115423840|emb|CAJ50391.1| holliday junction DNA helicase [Bordetella avium 197N]
          Length = 357

 Score =  379 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 186/324 (57%), Positives = 235/324 (72%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           +     E++    LRP+ L+E+ GQ  A   L++FI AA+ R+EALDHVL  GPPGLGKT
Sbjct: 21  APASPNEESIERALRPKALQEYVGQQRAREQLEIFIAAARKRSEALDHVLLFGPPGLGKT 80

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           TLA ++A E+GV  R TSGPV+ + GDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA
Sbjct: 81  TLAHIIAHEMGVQMRQTSGPVLERPGDLAALLTNLERNDVLFIDEIHRLSPVVEEILYPA 140

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +EDFQ+D+++GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  +DL
Sbjct: 141 LEDFQIDILIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYNTDDL 200

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             IV R A L    +T E A E+A R+RGTPRIA RLLRRVRD+AEV     I  E A+ 
Sbjct: 201 AHIVTRSAGLLNADITPEGAREVARRARGTPRIANRLLRRVRDYAEVKAGGRIDTEAANQ 260

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL  L +D  G D +D + L  I   F GGPVG+++++A + E RD IED+IEPY+IQ G
Sbjct: 261 ALAMLEVDPQGLDLMDRKLLEAIVHKFDGGPVGVDSLAAAIGEERDTIEDVIEPYLIQHG 320

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIP 332
           ++QRTPRGR+     W+HLG+  P
Sbjct: 321 YLQRTPRGRMATQTTWRHLGLQPP 344


>gi|52424768|ref|YP_087905.1| Holliday junction DNA helicase B [Mannheimia succiniciproducens
           MBEL55E]
 gi|68715412|sp|Q65UP0|RUVB_MANSM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|52306820|gb|AAU37320.1| RuvB protein [Mannheimia succiniciproducens MBEL55E]
          Length = 335

 Score =  379 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 189/331 (57%), Positives = 249/331 (75%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + ++S N    ++     +RP+ L ++ GQ +    + +FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRIISSNAQLGDEYIDRAIRPKLLTDYVGQPQVREQMGIFIQAAKLRQDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            +EE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 AIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY +EDL +IV R A    L ++D A+ EIA RSRGTPRIA RLLRRVRDFA+V +A 
Sbjct: 181 LEFYSVEDLTSIVARSAGCLNLEMSDGASHEIARRSRGTPRIANRLLRRVRDFADVKNAG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I+ +IA +AL  L ID+ GFD LD + L+ +   F GGPVG++ ++A + E RD IED+
Sbjct: 241 IISEDIAKSALSMLDIDQAGFDYLDRKLLSAVIERFDGGPVGLDNLAAAIGEERDTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           +EPY+IQQGF+QRTPRGR+     ++H G+D
Sbjct: 301 LEPYLIQQGFLQRTPRGRIATSRTYRHFGLD 331


>gi|148546489|ref|YP_001266591.1| Holliday junction DNA helicase RuvB [Pseudomonas putida F1]
 gi|166231541|sp|A5VZU7|RUVB_PSEP1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|148510547|gb|ABQ77407.1| Holliday junction DNA helicase subunit RuvB [Pseudomonas putida F1]
          Length = 348

 Score =  379 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 188/335 (56%), Positives = 250/335 (74%), Gaps = 1/335 (0%)

Query: 1   MMDREGLLSRN-VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L++ +   +E+     +RP +L+E+ GQ      + +FI+AA+ R E+LDH L 
Sbjct: 1   MIEADRLIAASGRDREEVQDRAIRPLSLDEYIGQPVVREQMALFIQAARGRGESLDHTLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A E+GV+ +STSGP++ + GDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIIAHEMGVSVKSTSGPILERPGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMEDFQLD+M+GEGP+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDFQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY  +DL TIV R A + GLA+ D+ A EIA R+RGTPRIA RLLRRVRD+AEV    
Sbjct: 181 LEFYNDKDLSTIVSRSANILGLAIEDQGAYEIARRARGTPRIANRLLRRVRDYAEVRGKG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT+ +AD AL  L +D+ GFD  D R L  +   F GGPVG++ ++A +SE R  IED+
Sbjct: 241 QITKAVADMALNLLDVDERGFDHSDRRLLLTMIEKFDGGPVGVDNLAAAISEERHTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           +EPY+IQQG+I RTPRGR++   A+ H G++IP R
Sbjct: 301 LEPYLIQQGYIMRTPRGRVVTRHAYLHFGLNIPGR 335


>gi|302879786|ref|YP_003848350.1| Holliday junction DNA helicase RuvB [Gallionella capsiferriformans
           ES-2]
 gi|302582575|gb|ADL56586.1| Holliday junction DNA helicase RuvB [Gallionella capsiferriformans
           ES-2]
          Length = 351

 Score =  379 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 191/339 (56%), Positives = 246/339 (72%), Gaps = 8/339 (2%)

Query: 1   MMDREGLLSR--------NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAE 52
           M+  + L +            QE+A    LRP+ L+E+ GQ +    L++FI+AAK R E
Sbjct: 1   MIHSDNLTAEPRLTTPAVASRQEEALERALRPKQLDEYVGQEKIREQLEIFIQAAKQRQE 60

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID 112
            LDHVL  GPPGLGKTTLAQ++ARE+GVN R TSGPV+ +AGDLAALLTNLE  DVLFID
Sbjct: 61  PLDHVLLFGPPGLGKTTLAQIIAREMGVNLRHTSGPVLERAGDLAALLTNLEPNDVLFID 120

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           EIHRLS +VEEILYPA+ED+Q+D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+D
Sbjct: 121 EIHRLSPVVEEILYPALEDYQIDIMIGEGPAARSVKLDLPPFTLVGATTRAGMLTNPLRD 180

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           RFGI  RL FY  E+L+ IV R + L  + ++ + A EIA RSRGTPRIA RLLRRVRD+
Sbjct: 181 RFGIVSRLEFYTPEELQRIVMRSSGLLEMNLSHDGAMEIARRSRGTPRIANRLLRRVRDY 240

Query: 233 AEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEP 292
           A+V      TR +ADAAL  L +D  G D +D + L  I   F GGPVG++ ++A + E 
Sbjct: 241 ADVKAGGDATRRVADAALTMLDVDSQGLDVMDRKLLLTIIEKFMGGPVGVDNLAAAIGEE 300

Query: 293 RDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           RD IED++EPY+IQQG++QRTPRGR+    A+ H G+ +
Sbjct: 301 RDTIEDVLEPYLIQQGYLQRTPRGRMATANAYLHFGLTV 339


>gi|20807636|ref|NP_622807.1| Holliday junction DNA helicase B [Thermoanaerobacter tengcongensis
           MB4]
 gi|254478016|ref|ZP_05091400.1| Holliday junction DNA helicase RuvB [Carboxydibrachium pacificum
           DSM 12653]
 gi|22001975|sp|Q8RAN2|RUVB_THETN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|20516179|gb|AAM24411.1| Holliday junction resolvasome helicase subunit [Thermoanaerobacter
           tengcongensis MB4]
 gi|214036020|gb|EEB76710.1| Holliday junction DNA helicase RuvB [Carboxydibrachium pacificum
           DSM 12653]
          Length = 338

 Score =  379 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 180/331 (54%), Positives = 245/331 (74%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
            E +L++N +QEDA    LRPR L E+ GQ +    LK++IEAAK R E LDHVL  GPP
Sbjct: 2   EERILTQNFTQEDATEYSLRPRWLSEYIGQEKIKQELKIYIEAAKKRGEPLDHVLLYGPP 61

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA V++ E+GV  + TSGP I ++GDLAA+LTNL++ D+LFIDEIHRL+  VEE
Sbjct: 62  GLGKTTLATVISNEMGVGIKITSGPAIERSGDLAAILTNLQENDILFIDEIHRLNRSVEE 121

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILYPAMEDF+LD+++G+GPSARS++++L +FTLI ATTR  L+T+PL+ RFG+  RL++Y
Sbjct: 122 ILYPAMEDFELDIVIGKGPSARSIRLSLPKFTLIGATTRAALMTSPLRSRFGVINRLDYY 181

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            +E+LK I++R A +  + + ++AA EIA RSRGTPRIA RLL+RVRDFAEV     I  
Sbjct: 182 SVEELKEIIKRSANILNIGIDEDAAFEIARRSRGTPRIANRLLKRVRDFAEVKGNGYIDY 241

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
             A+ AL  L +D+MG +++D + L  I   FGGGPVGI+ I+A + E  D IED+ EPY
Sbjct: 242 NTANIALNMLGVDEMGLEEIDRKILIAIIEKFGGGPVGIDAIAASVGEDGDTIEDMYEPY 301

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           ++Q GF+ RTPRGR++  +A+Q+L      +
Sbjct: 302 LMQIGFLNRTPRGRVVTKLAYQYLKYPYVEQ 332


>gi|228993159|ref|ZP_04153081.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus
           pseudomycoides DSM 12442]
 gi|228999209|ref|ZP_04158790.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus
           mycoides Rock3-17]
 gi|229006756|ref|ZP_04164390.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus
           mycoides Rock1-4]
 gi|228754617|gb|EEM04028.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus
           mycoides Rock1-4]
 gi|228760554|gb|EEM09519.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus
           mycoides Rock3-17]
 gi|228766618|gb|EEM15259.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus
           pseudomycoides DSM 12442]
          Length = 333

 Score =  379 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 190/332 (57%), Positives = 245/332 (73%), Gaps = 2/332 (0%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD E LLS   + EDAD+   LRP+TL ++ GQ +A  NL+VFIEAAK R E LDHVL  
Sbjct: 1   MD-ERLLSGESAYEDADLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLLY 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT L+  DVLFIDEIHRL   
Sbjct: 60  GPPGLGKTTLANIIANEMGVNIRTTSGPAIERPGDLAAVLTALQPGDVLFIDEIHRLHRS 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EE+LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTR G L+ PL+DRFG+  RL
Sbjct: 120 IEEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y ++ L  IV+R A++  + +   AA EIA R+RGTPRIA RLLRRVRDFA+V    T
Sbjct: 180 EYYTVDQLSAIVERTAEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRSDGT 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I  EI   AL  L +DK+G D +D + L  I   F GGPVG+ET+SA + E    IED+ 
Sbjct: 240 IAMEITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSATIGEESTTIEDVY 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EPY++Q GF+QRTPRGR++ P+A++H G+D+P
Sbjct: 300 EPYLLQIGFLQRTPRGRIVTPLAYEHFGMDMP 331


>gi|238796297|ref|ZP_04639806.1| Holliday junction DNA helicase RuvB [Yersinia mollaretii ATCC
           43969]
 gi|238719742|gb|EEQ11549.1| Holliday junction DNA helicase RuvB [Yersinia mollaretii ATCC
           43969]
          Length = 335

 Score =  379 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 193/331 (58%), Positives = 246/331 (74%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S  V S E++    +RP+ L E+ GQ      +++FI+AAK R +ALDHVL 
Sbjct: 2   MIEADRLISAGVISDEESIDRAIRPKLLAEYVGQPHVREQMEIFIQAAKQRGDALDHVLI 61

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 62  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 121

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 122 VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 181

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IV R AK  GL +T E A ++A RSRGTPRI  RLLRRVRDFAEV    
Sbjct: 182 LEFYQVADLEHIVARSAKCLGLELTAEGAHQLARRSRGTPRITNRLLRRVRDFAEVRADG 241

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  ++A  AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED+
Sbjct: 242 AINGDVAMKALDMLNVDAEGFDFMDRKLLLAVIDKFMGGPVGLDNLAAAIGEERETIEDV 301

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           +EPY+IQQGFIQRTPRGR+    A++H GI 
Sbjct: 302 LEPYLIQQGFIQRTPRGRIATNHAYKHFGIT 332


>gi|148258114|ref|YP_001242699.1| Holliday junction DNA helicase RuvB [Bradyrhizobium sp. BTAi1]
 gi|172047314|sp|A5ERJ9|RUVB_BRASB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|146410287|gb|ABQ38793.1| Holliday junction DNA helicase subunit RuvB [Bradyrhizobium sp.
           BTAi1]
          Length = 348

 Score =  379 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 229/334 (68%), Positives = 273/334 (81%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M     ++S     +D   + LRP+ L EF GQ +A +NL +FIEAA+ R EALDHVLFV
Sbjct: 1   MKPPARMVSPERRSDDVGDTALRPQQLSEFVGQQQARANLSIFIEAARKRGEALDHVLFV 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ+VARELGV FR+TSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRLS  
Sbjct: 61  GPPGLGKTTLAQIVARELGVGFRATSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSPA 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDFQLDL++GEGP+ARSVKI+L++FTL+ ATTR GLLTNPL+DRFGIPIRL
Sbjct: 121 VEEVLYPAMEDFQLDLIIGEGPAARSVKIDLAKFTLVGATTRAGLLTNPLRDRFGIPIRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           NFY +E+L+ IV RGA++ G+ +T + A EIA R+RGTPRIAGRLLRRVRDFA  A+A  
Sbjct: 181 NFYTVEELEGIVTRGARVLGVGMTADGANEIARRARGTPRIAGRLLRRVRDFASAANADA 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I R IAD AL  L +D  G D +D RYLT IA N+GGGPVG+ET++A LSEPRDAIED+I
Sbjct: 241 IDRAIADHALSALEVDAAGLDAMDRRYLTTIALNYGGGPVGVETMAAALSEPRDAIEDII 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           EPY+IQ G++QRTPRGRLL   A++HLG+  P R
Sbjct: 301 EPYLIQCGYLQRTPRGRLLTSHAFRHLGMAEPSR 334


>gi|238019732|ref|ZP_04600158.1| hypothetical protein VEIDISOL_01607 [Veillonella dispar ATCC 17748]
 gi|237863773|gb|EEP65063.1| hypothetical protein VEIDISOL_01607 [Veillonella dispar ATCC 17748]
          Length = 334

 Score =  379 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 191/330 (57%), Positives = 241/330 (73%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M +   L+     +ED     LRP+   E+ GQ EA  NL V+I+AAK R EALDHVL  
Sbjct: 1   MNEEVRLVGNGEHEEDMWQYSLRPKFFNEYVGQEEAKGNLNVYIQAAKQRGEALDHVLLY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A ELGVNFR TSGP I K+GDLAA+LTNL+D DVLFIDEIHRLS  
Sbjct: 61  GPPGLGKTTLAGIIANELGVNFRITSGPAIEKSGDLAAILTNLDDHDVLFIDEIHRLSRS 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LY AMED+ +D+++G+GPSAR+V+I+L +FTL+ ATTR G L  PL+DRFGI  RL
Sbjct: 121 VEEVLYSAMEDYAIDIIIGKGPSARTVRIDLPKFTLVGATTRAGALAAPLRDRFGIINRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y+  +L+ IV R A++  + +    A EIA RSRGTPRIA RLL+RVRDFA+V     
Sbjct: 181 EYYKQPELEFIVTRAAEILHIGIEPTGASEIARRSRGTPRIANRLLKRVRDFAQVIGDGV 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           IT+ IAD AL RL IDK G D++D R L  I   + GGPVGI+TI+A +SE RD IED+ 
Sbjct: 241 ITQSIADDALQRLYIDKEGLDRIDRRVLECIIEKYDGGPVGIDTIAAAISEERDTIEDVY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           EPY++Q GF+ RTPRGR+   +A++HLGI 
Sbjct: 301 EPYLMQLGFLGRTPRGRVATKLAYEHLGIS 330


>gi|238754861|ref|ZP_04616211.1| Holliday junction DNA helicase RuvB [Yersinia ruckeri ATCC 29473]
 gi|238706872|gb|EEP99239.1| Holliday junction DNA helicase RuvB [Yersinia ruckeri ATCC 29473]
          Length = 334

 Score =  379 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 191/331 (57%), Positives = 246/331 (74%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S  V S+E+     +RP+ L E+ GQ      +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRLISAGVISEEEIIDRAIRPKRLSEYVGQPHVREQMEIFIQAAKQRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY + DL+ IV R A+  GL +T E A ++A RSRGTPRI  RLLRRVRDFAEV    
Sbjct: 181 LEFYPVADLEHIVARSAQCLGLELTQEGAHQLARRSRGTPRITNRLLRRVRDFAEVKADG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  ++A  AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 AINGDVAMKALDMLNVDAEGFDYMDRKLLLAVIDKFMGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           +EPY+IQQGFIQRTPRGR+    A++H GI+
Sbjct: 301 LEPYLIQQGFIQRTPRGRIATHHAYKHFGIE 331


>gi|330950608|gb|EGH50868.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae Cit 7]
          Length = 353

 Score =  379 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 192/336 (57%), Positives = 250/336 (74%), Gaps = 2/336 (0%)

Query: 1   MMDREGLLSRN--VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M+D + L++      +++     +RP +L ++ GQ      +++FI+AA+ R+EALDH L
Sbjct: 1   MIDADRLITATGGRDRDEQMDRAIRPLSLADYIGQPTVREQMELFIQAARGRSEALDHTL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA ++A+E+GV+ +STSGPV+ + GDLAA+LTNLE  DVLFIDEIHRLS
Sbjct: 61  IFGPPGLGKTTLANIIAQEMGVSIKSTSGPVLERPGDLAAILTNLEPNDVLFIDEIHRLS 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            IVEE+LYPAMEDFQLD+M+GEGP+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  
Sbjct: 121 PIVEEVLYPAMEDFQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQ 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           RL FY I DL TIV R A + GL +  + A EIA R+RGTPRIA RLLRRVRDFAEV   
Sbjct: 181 RLEFYNIADLSTIVSRSAGILGLVIEPQGAFEIARRARGTPRIANRLLRRVRDFAEVRGN 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             ITR+ AD AL  L +D+ GFD  D R L  +   F GGPVGI++++A +SE R  IED
Sbjct: 241 GQITRQTADKALNLLDVDEHGFDHQDRRLLLTMIEKFDGGPVGIDSLAAAISEERHTIED 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           ++EPY+IQQG+I RTPRGR++   A+ H G++IP R
Sbjct: 301 VLEPYLIQQGYIMRTPRGRVVTRHAYLHFGLNIPSR 336


>gi|332285260|ref|YP_004417171.1| holliday junction DNA helicase [Pusillimonas sp. T7-7]
 gi|330429213|gb|AEC20547.1| holliday junction DNA helicase [Pusillimonas sp. T7-7]
          Length = 339

 Score =  379 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 192/323 (59%), Positives = 234/323 (72%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
            +   ED+    LRPR L+E+ GQ      L++FI AAK R EALDHVL  GPPGLGKTT
Sbjct: 5   SSSPNEDSIERALRPRELKEYIGQHRVREQLEIFIAAAKNRGEALDHVLLFGPPGLGKTT 64

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           LA +VA E+GV  R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+
Sbjct: 65  LAHIVAHEMGVQLRQTSGPVLERAGDLAALLTNLEKNDVLFIDEIHRLSPVVEEILYPAL 124

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           EDFQ+D+++GEGP+ARSVKI+L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  EDL 
Sbjct: 125 EDFQIDILIGEGPAARSVKIDLQPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYNTEDLT 184

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            IV R A+L     T + A EIA R+RGTPRIA RLLRRVRD+AEV     I   +A AA
Sbjct: 185 HIVTRSAQLLNAHTTPDGAAEIARRARGTPRIANRLLRRVRDYAEVRADGNIDTTVAGAA 244

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           L  L +D  G D +D + L  I   F GGPVG+++++A + E RD IED+IEP++IQQG+
Sbjct: 245 LAMLEVDPQGLDLMDRKLLEAIIHKFDGGPVGVDSLAAAIGEERDTIEDVIEPFLIQQGY 304

Query: 310 IQRTPRGRLLMPIAWQHLGIDIP 332
           +QRTPRGR      W+HLG+  P
Sbjct: 305 LQRTPRGRTATQTTWRHLGLTPP 327


>gi|145632563|ref|ZP_01788297.1| Holliday junction DNA helicase B [Haemophilus influenzae 3655]
 gi|229845013|ref|ZP_04465150.1| Holliday junction DNA helicase B [Haemophilus influenzae 6P18H1]
 gi|144986758|gb|EDJ93310.1| Holliday junction DNA helicase B [Haemophilus influenzae 3655]
 gi|229812147|gb|EEP47839.1| Holliday junction DNA helicase B [Haemophilus influenzae 6P18H1]
          Length = 335

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 182/331 (54%), Positives = 245/331 (74%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLS-RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + ++S +  + E+     +RP+ L ++ GQ +    + +FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRIISVQAKADEEVIDRAIRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            +EE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ ATTR G LT+PL+DRFGI  R
Sbjct: 121 AIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY +EDL +IV R A    L +  +AA E+A RSRGTPRIA RLLRRVRD+A+V +  
Sbjct: 181 LEFYSVEDLTSIVARSAGCLNLELEQQAAFEVARRSRGTPRIANRLLRRVRDYADVRNGG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I+ ++A  AL  L +D  GFD LD + L+ +   F GGPVG++ ++A + E RD IED+
Sbjct: 241 VISVDVAKQALSMLDVDDAGFDYLDRKLLSAVIERFDGGPVGLDNLAAAIGEERDTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           +EPY+IQQGF+QRTPRGR+     ++H G+ 
Sbjct: 301 LEPYLIQQGFLQRTPRGRIATSKTYRHFGLQ 331


>gi|254253225|ref|ZP_04946543.1| Holliday junction DNA helicase RuvB [Burkholderia dolosa AUO158]
 gi|124895834|gb|EAY69714.1| Holliday junction DNA helicase RuvB [Burkholderia dolosa AUO158]
          Length = 355

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 195/331 (58%), Positives = 244/331 (73%), Gaps = 2/331 (0%)

Query: 5   EGLL--SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           E ++  +   S E+     LRPR L+++ GQ +    L++FIEAAK R+E LDHVL  GP
Sbjct: 10  ERIIAATPTSSHEEVFERALRPRQLDDYVGQEKVRGQLEIFIEAAKRRSEPLDHVLLFGP 69

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++ARE+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VE
Sbjct: 70  PGLGKTTLAHIIAREMGVNLRQTSGPVLERAGDLAALLTNLEPNDVLFIDEIHRLSPVVE 129

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILYPA+ED+Q+D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL F
Sbjct: 130 EILYPALEDYQIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEF 189

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y+ E L  IV+R A L    +    A EIA RSRGTPRIA RLLRRVRDFAEV     IT
Sbjct: 190 YDAEQLSRIVKRSASLLNAQIDPNGALEIAKRSRGTPRIANRLLRRVRDFAEVKADGQIT 249

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             +ADAAL  L +D +GFD +D + L  I   F GGPVGI+ ++A + E RD IED++EP
Sbjct: 250 AAVADAALAMLDVDPVGFDLMDRKLLEAILHKFDGGPVGIDNLAAAIGEERDTIEDVLEP 309

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           Y+IQQGF+QRTPRGR+   + ++H G+  P 
Sbjct: 310 YLIQQGFLQRTPRGRVATLLTYRHFGLAAPD 340


>gi|259908220|ref|YP_002648576.1| Holliday junction DNA helicase RuvB [Erwinia pyrifoliae Ep1/96]
 gi|224963842|emb|CAX55344.1| Holliday junction ATP-dependent DNA helicase [Erwinia pyrifoliae
           Ep1/96]
 gi|283478150|emb|CAY74066.1| Holliday junction ATP-dependent DNA helicase ruvB [Erwinia
           pyrifoliae DSM 12163]
 gi|310767865|gb|ADP12815.1| Holliday junction DNA helicase RuvB [Erwinia sp. Ejp617]
          Length = 334

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 193/331 (58%), Positives = 251/331 (75%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L++  V ++E+     +RP+ LEE+ GQ      +++FI+AA+ R +ALDH+L 
Sbjct: 1   MIEADRLVAAGVITEEEVIDRAIRPKMLEEYVGQPVVREQMEIFIKAAQMRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY +EDL+ IV R A   GL ++DE A EIA R+RGTPRIA RLLRRVRDFAEV  A 
Sbjct: 181 LEFYRVEDLQHIVGRSAACLGLPLSDEGALEIARRARGTPRIANRLLRRVRDFAEVRAAG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            ++ ++A  AL  L++D  GFD +D + L  I   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 EMSGDVACKALDMLSVDSEGFDYMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           +EPY+IQQGFIQRTPRGRL    A++H GI 
Sbjct: 301 LEPYLIQQGFIQRTPRGRLATQHAYKHFGIT 331


>gi|302391488|ref|YP_003827308.1| Holliday junction DNA helicase subunit RuvB [Acetohalobium
           arabaticum DSM 5501]
 gi|302203565|gb|ADL12243.1| Holliday junction DNA helicase subunit RuvB [Acetohalobium
           arabaticum DSM 5501]
          Length = 333

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 177/331 (53%), Positives = 244/331 (73%), Gaps = 1/331 (0%)

Query: 4   REGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
            + ++S + +  D ++ S LRP++L E+ GQ +  +NL++FIEAAK R EALDHVL  GP
Sbjct: 2   EDRIVSPDENTSDKELDSSLRPKSLNEYIGQEKVKNNLEIFIEAAKGRGEALDHVLLYGP 61

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++A E+GVN + TSGP I + GDLAA+LTNL   DVLFIDEIHRL+ +VE
Sbjct: 62  PGLGKTTLANIIAEEMGVNIKITSGPAIERPGDLAAILTNLNPNDVLFIDEIHRLNRMVE 121

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMEDF LD+++G+GPSARSV+++L++FTL+ ATT+ G LT+PL+DRFG+  RL  
Sbjct: 122 EVLYPAMEDFALDIIIGDGPSARSVRLDLAQFTLVGATTKAGQLTSPLRDRFGVISRLKL 181

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  E+L+ IV R A++  + + D  A E+A RSRGTPRIA RLL+RVRD+A+V     IT
Sbjct: 182 YSTEELQQIVYRSARVLNVKIDDAGALELAKRSRGTPRIANRLLKRVRDYAQVRADGVIT 241

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            E+A A L  L +D++G D +D + L  +   FGGGPVG+ T+SA + E    IED+ EP
Sbjct: 242 EEVAKAGLEMLEVDELGLDDIDRKMLQTLINKFGGGPVGLNTLSAAVGEEEATIEDVYEP 301

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           Y++Q G++QRTPRGR+   +A++HL +D   
Sbjct: 302 YLLQIGYLQRTPRGRVATKLAYEHLDLDYKE 332


>gi|87198448|ref|YP_495705.1| Holliday junction DNA helicase B [Novosphingobium aromaticivorans
           DSM 12444]
 gi|97190186|sp|Q2GBA2|RUVB_NOVAD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|87134129|gb|ABD24871.1| Holliday junction DNA helicase RuvB [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 342

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 224/331 (67%), Positives = 261/331 (78%), Gaps = 1/331 (0%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M    LLS     ED D + LRP+TL EF GQ  A  NL+VFIE+AK R EA+DHVLF G
Sbjct: 1   MTDNPLLSSASQIEDQD-AALRPKTLAEFVGQAGAKDNLQVFIESAKQRREAMDHVLFFG 59

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLAQ++ARELGVNFR+TSGPVIAKAGDLAALLTNLE  DVLFIDEIHRL+ +V
Sbjct: 60  PPGLGKTTLAQIIARELGVNFRATSGPVIAKAGDLAALLTNLEHGDVLFIDEIHRLNPVV 119

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMED  LDL++GEGPSARSV+I+L  FTLI ATTR GLL  PL+DRFGIP+RL 
Sbjct: 120 EEVLYPAMEDRALDLIIGEGPSARSVRIDLPPFTLIGATTRQGLLQTPLRDRFGIPVRLQ 179

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY +E+L+ +V RGA L G+ +    A EIA RSRGTPR+AGRLLRRVRDFA+VA A+ I
Sbjct: 180 FYSVEELERVVARGASLMGIGIDKGGATEIARRSRGTPRVAGRLLRRVRDFAQVAGAEKI 239

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T+ IAD AL RL +DK+G D  D RYLTMIA  + GGPVG+ET++AGLSEPRD IE++IE
Sbjct: 240 TQSIADNALTRLEVDKIGLDLQDRRYLTMIADIYKGGPVGVETLAAGLSEPRDTIEEVIE 299

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           PY+IQ G I RT RGR L    WQHLG+  P
Sbjct: 300 PYLIQLGMIARTARGRCLNDRGWQHLGLAPP 330


>gi|303241603|ref|ZP_07328102.1| Holliday junction DNA helicase RuvB [Acetivibrio cellulolyticus
           CD2]
 gi|302590823|gb|EFL60572.1| Holliday junction DNA helicase RuvB [Acetivibrio cellulolyticus
           CD2]
          Length = 330

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 186/326 (57%), Positives = 240/326 (73%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
            + L+  NV++ED D S LRPR L E+ GQ +   NL VFIEAAK R EALDHVL  GPP
Sbjct: 2   EDRLIGCNVNEEDVDESSLRPRRLNEYIGQKKVKENLVVFIEAAKKRKEALDHVLLYGPP 61

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++A ELGVN R TSGP I K GDLAA+LTNL + DVLFIDEIHRL+  VEE
Sbjct: 62  GLGKTTLASIIASELGVNIRITSGPAIEKPGDLAAILTNLGNYDVLFIDEIHRLNRSVEE 121

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILYPAMED+ LD+++G+GPSARS++++L +FTLI ATTR GLLT+PL+DRFG+  +L  Y
Sbjct: 122 ILYPAMEDYALDIIIGKGPSARSIRLDLPKFTLIGATTRAGLLTSPLRDRFGVINKLEMY 181

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
             ++LK IV+R A +  + + ++A+ EIA RSRGTPRIA R+L+RVRDFA+V     IT+
Sbjct: 182 TPKELKAIVERSAGILSIGIEEDASEEIARRSRGTPRIANRILKRVRDFAQVKGEGLITK 241

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           EIA  +L  L ID +G D +D   L  I   F GGPVG++T++A   E  + IED+ EPY
Sbjct: 242 EIASMSLDALEIDPIGLDGVDRSLLMSIIDKFAGGPVGLDTLAATTGEETNTIEDVYEPY 301

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGI 329
           ++Q GFI +TPRGR+   +A+ H G+
Sbjct: 302 LLQLGFINKTPRGRVATKLAYDHFGL 327


>gi|228954704|ref|ZP_04116727.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|228805031|gb|EEM51627.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
          Length = 333

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 189/333 (56%), Positives = 245/333 (73%), Gaps = 2/333 (0%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD E LLS   + EDAD+   LRP+TL ++ GQ +A  NL+VFIEAAK R E LDHVL  
Sbjct: 1   MD-ERLLSGESAYEDADLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLLY 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT L+  DVLFIDEIHRL   
Sbjct: 60  GPPGLGKTTLANIIANEMGVNVRTTSGPAIERPGDLAAVLTALQPGDVLFIDEIHRLHRS 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EE+LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTR G L+ PL+DRFG+  RL
Sbjct: 120 IEEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y ++ L  IV+R A++  + +   AA EIA R+RGTPRIA RLLRRVRDFA+V    T
Sbjct: 180 EYYTVDQLSAIVERTAEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRGNGT 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +T EI   AL  L +DK+G D +D + L  I   F GGPVG+ET+SA + E    IED+ 
Sbjct: 240 VTMEITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSATIGEESHTIEDVY 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY++Q GF+QRTPRGR++ P+A++H  ++IP 
Sbjct: 300 EPYLLQIGFLQRTPRGRIVTPLAYEHFEMEIPK 332


>gi|313894579|ref|ZP_07828142.1| Holliday junction DNA helicase RuvB [Veillonella sp. oral taxon 158
           str. F0412]
 gi|313440769|gb|EFR59198.1| Holliday junction DNA helicase RuvB [Veillonella sp. oral taxon 158
           str. F0412]
          Length = 334

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 192/330 (58%), Positives = 243/330 (73%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M +   L+     +ED     LRP+   E+ GQ EA  NL V+I+AAK R EALDHVL  
Sbjct: 1   MNEEVRLVGNGEHEEDIWQYSLRPKFFNEYVGQEEAKGNLNVYIQAAKQRGEALDHVLLY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A ELGVNFR TSGP I K+GDLAA+LTNL+D DVLFIDEIHRLS  
Sbjct: 61  GPPGLGKTTLAGIIANELGVNFRITSGPAIEKSGDLAAILTNLDDHDVLFIDEIHRLSRS 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LY AMED+ +D+++G+GPSAR+V+I+L +FTL+ ATTR G L  PL+DRFGI  RL
Sbjct: 121 VEEVLYSAMEDYAIDIIIGKGPSARTVRIDLPKFTLVGATTRAGALAAPLRDRFGIINRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y+  +L+ IV R A++  + +    A EIA RSRGTPRIA RLL+RVRDFA+V     
Sbjct: 181 EYYKQPELEFIVTRAAEILKIGIEPTGASEIARRSRGTPRIANRLLKRVRDFAQVIGDGV 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           IT++IAD AL RL IDK G D++D R L  I  N+ GGPVGI+TI+A +SE RD IED+ 
Sbjct: 241 ITQDIADEALQRLYIDKEGLDRIDRRVLECIIGNYDGGPVGIDTIAAAISEERDTIEDVY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           EPY++Q GF+ RTPRGR+   +A++HLGI 
Sbjct: 301 EPYLMQLGFLGRTPRGRVATKLAYEHLGIS 330


>gi|229086982|ref|ZP_04219139.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           Rock3-44]
 gi|228696358|gb|EEL49186.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           Rock3-44]
          Length = 333

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 189/333 (56%), Positives = 245/333 (73%), Gaps = 2/333 (0%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD E LLS   + EDAD+   LRP+TL ++ GQ +A  NL+VFIEAAK R E LDHVL  
Sbjct: 1   MD-ERLLSGESAYEDADLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLLY 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT L+  DVLFIDEIHRL   
Sbjct: 60  GPPGLGKTTLANIIANEMGVNIRTTSGPAIERPGDLAAVLTALQPGDVLFIDEIHRLHRS 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EE+LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTR G L+ PL+DRFG+  RL
Sbjct: 120 IEEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y ++ L  IV+R A++  + +   AA EIA R+RGTPRIA RLLRRVRDFA+V    T
Sbjct: 180 EYYTVDQLSAIVERTAEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRSDGT 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I  EI   AL  L +DK+G D +D + L  I   F GGPVG+ET+SA + E    IED+ 
Sbjct: 240 IAMEITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSATIGEESTTIEDVY 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY++Q GF+QRTPRGR++ P+A++H G+++P 
Sbjct: 300 EPYLLQIGFLQRTPRGRIVTPLAYEHFGMEMPK 332


>gi|323527311|ref|YP_004229464.1| Holliday junction DNA helicase RuvB [Burkholderia sp. CCGE1001]
 gi|323384313|gb|ADX56404.1| Holliday junction DNA helicase RuvB [Burkholderia sp. CCGE1001]
          Length = 392

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 194/331 (58%), Positives = 246/331 (74%), Gaps = 2/331 (0%)

Query: 5   EGLLSRNV--SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           E +++       E+A    LRPR LEE+ GQ +    L++FIEAAK R+E+LDHVL  GP
Sbjct: 48  ERIIAATPVSPNEEAFERALRPRQLEEYVGQEKVRGQLEIFIEAAKRRSESLDHVLLFGP 107

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++ARE+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VE
Sbjct: 108 PGLGKTTLAHIIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVE 167

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILYPA+ED+Q+D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL F
Sbjct: 168 EILYPALEDYQIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEF 227

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  E+L  IV R A L    +  + A EIA R+RGTPRIA RLLRRVRD+AEV     IT
Sbjct: 228 YNAEELARIVTRSASLLNAQIHPDGAFEIARRARGTPRIANRLLRRVRDYAEVKADGNIT 287

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            ++ADAAL  L +D +GFD +D + L  I   F GGPVG++ ++A + E RD IED++EP
Sbjct: 288 AQVADAALRMLDVDAVGFDLMDRKLLEAILHKFDGGPVGVDNLAAAIGEERDTIEDVLEP 347

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           Y+IQQGF+QRTPRGR+   + ++H G+  P 
Sbjct: 348 YLIQQGFLQRTPRGRVATLLTYRHFGLAAPD 378


>gi|167855147|ref|ZP_02477918.1| Holliday junction DNA helicase RuvB [Haemophilus parasuis 29755]
 gi|167853692|gb|EDS24935.1| Holliday junction DNA helicase RuvB [Haemophilus parasuis 29755]
          Length = 334

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 185/330 (56%), Positives = 245/330 (74%), Gaps = 1/330 (0%)

Query: 1   MMDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + ++S +  +ED  I   +RP+ L ++ GQ      +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRIISASAKKEDETIDRAIRPKMLADYVGQPSVREQMEIFIKAAKLRNDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIIANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPYDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            +EE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ ATTR G LT+PL+DRFGI  R
Sbjct: 121 AIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY +EDL +IV R A    L +   AA EIA RSRGTPRIA RLLRRVRDFA+V +  
Sbjct: 181 LEFYSVEDLTSIVSRSASCLNLNLATNAAYEIARRSRGTPRIANRLLRRVRDFADVRNNG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I+ +IA  AL  L +D  GFD +D + L+ +   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 IISSDIAKQALTMLDVDSEGFDFMDRKLLSAVIERFDGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           +EPY+IQQGF+QRTPRGR+     + HLG+
Sbjct: 301 LEPYLIQQGFLQRTPRGRIATSRTYSHLGL 330


>gi|153810825|ref|ZP_01963493.1| hypothetical protein RUMOBE_01209 [Ruminococcus obeum ATCC 29174]
 gi|149833221|gb|EDM88303.1| hypothetical protein RUMOBE_01209 [Ruminococcus obeum ATCC 29174]
          Length = 332

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 169/328 (51%), Positives = 244/328 (74%), Gaps = 1/328 (0%)

Query: 4   REGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
            + +++ +V++ED  +   LRP+TL+E+ GQ +    LK++IEAAK R +ALDHVLF GP
Sbjct: 2   EKRMITTDVTEEDLPLEGSLRPQTLDEYIGQEKTKKTLKIYIEAAKQRHDALDHVLFYGP 61

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTL+ ++A E+G + + TSGP I K G++AA+L NL++ D+LF+DEIHRL+  VE
Sbjct: 62  PGLGKTTLSGIIANEMGTHMKVTSGPAIEKPGEMAAILNNLQEGDILFVDEIHRLNRQVE 121

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMEDF +D+M+G+G SARS++++L +FTL+ ATTR GLL+ PL+DRFG+   L F
Sbjct: 122 EVLYPAMEDFAIDIMIGKGASARSIRLDLPKFTLVGATTRAGLLSAPLRDRFGVMHHLEF 181

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  ++L+TIV R A++ G+ +  + A EIA RSRGTPR+A RLL+RVRDFA+V +   IT
Sbjct: 182 YNHKELQTIVLRSAQVLGVEIDAKGAAEIAKRSRGTPRLANRLLKRVRDFAQVKYDGRIT 241

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            ++A  AL  L +D+ G D++D R L  +  NF GGPVG+ET++A + E    +ED+ EP
Sbjct: 242 YDVASFALDLLEVDQYGLDKIDRRILQTLIVNFQGGPVGLETLAAAIGEDAGTLEDVYEP 301

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           Y++Q GF+ RTPRGR    +A++HLG +
Sbjct: 302 YLLQNGFLNRTPRGRTASSLAYEHLGFE 329


>gi|291563158|emb|CBL41974.1| Holliday junction DNA helicase, RuvB subunit [butyrate-producing
           bacterium SS3/4]
          Length = 332

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 176/329 (53%), Positives = 241/329 (73%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M R+ + +    ++      LRP+ L+++ GQ +  S LK+FI+AAK+R EALDHVLF G
Sbjct: 1   MSRKIITTEETEEDKKIEGTLRPQYLKDYIGQEKIKSTLKIFIDAAKSRGEALDHVLFYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTL  ++A E+GVN + TSGP I K G++AA+L NL++ DVLF+DEIHRL+  V
Sbjct: 61  PPGLGKTTLCGIIANEMGVNLKVTSGPAIEKPGEMAAILNNLQEGDVLFVDEIHRLNRQV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMEDF +D+M+G+  SARS++++L +FTL+ ATTRVGLLT PL+DRFG+  RL 
Sbjct: 121 EEVLYPAMEDFAIDIMLGKDSSARSIRLDLPKFTLVGATTRVGLLTAPLRDRFGVIQRLE 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY  E+L  IV+R AK+ G+ + +E A EIA RSRGTPR+A RLL+RVRDFA+V +   I
Sbjct: 181 FYTPEELCVIVKRSAKVLGVEIDEEGAFEIARRSRGTPRLANRLLKRVRDFAQVKYDGVI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           TR +AD AL  L +DK+G D  D   L  + + F GGPVG+ET++A + E    +ED+ E
Sbjct: 241 TRHVADFALDILDVDKLGLDNNDRTLLLTLIQKFSGGPVGLETLAASIGEDSGTLEDVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           PY++  G I RTPRGR+   +A++HLG+D
Sbjct: 301 PYLLMNGLIMRTPRGRMATDLAYKHLGLD 329


>gi|289578211|ref|YP_003476838.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter italicus
           Ab9]
 gi|297544492|ref|YP_003676794.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|289527924|gb|ADD02276.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter italicus
           Ab9]
 gi|296842267|gb|ADH60783.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 338

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 177/331 (53%), Positives = 244/331 (73%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
            E +L+++ +QEDA    LRPR L E+ GQ +    LK++IEAAK R E LDHVL  GPP
Sbjct: 2   EERILTQSFTQEDASEYSLRPRWLSEYIGQEKIKEELKIYIEAAKMRKEPLDHVLLYGPP 61

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA V++ E+GV  + TSGP I ++GDLAA+LTNL++ D+LFIDEIHRL+  VEE
Sbjct: 62  GLGKTTLATVISNEMGVGIKITSGPAIERSGDLAAILTNLQENDILFIDEIHRLNRSVEE 121

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILYPAMEDF+LD+++G+GPSARS++++L RFTLI ATTR  L+T+PL+DRFG+  RL++Y
Sbjct: 122 ILYPAMEDFELDIVIGKGPSARSIRLSLPRFTLIGATTRAALMTSPLRDRFGVINRLDYY 181

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            +++LK I++R A +  + + ++AA EIA RSRGTPRIA RLL+RVRDFA+V     I  
Sbjct: 182 SVDELKEIIKRSANILNIGIDEDAALEIAKRSRGTPRIANRLLKRVRDFAQVRGNGYINF 241

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           + +  AL  L +D+MG + +D + L  I   FGGGPVGI+ I+A + E  D IED+ EPY
Sbjct: 242 KTSKEALDVLGVDEMGLEYIDRKILVSIIEKFGGGPVGIDAIAASIGEDGDTIEDVYEPY 301

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           ++Q GF+ RTPRGR++  +A+ +L      +
Sbjct: 302 LLQIGFLNRTPRGRVVTKLAYDYLKYPYIEQ 332


>gi|240014101|ref|ZP_04721014.1| Holliday junction DNA helicase RuvB [Neisseria gonorrhoeae DGI18]
 gi|240016536|ref|ZP_04723076.1| Holliday junction DNA helicase RuvB [Neisseria gonorrhoeae FA6140]
 gi|240080660|ref|ZP_04725203.1| Holliday junction DNA helicase RuvB [Neisseria gonorrhoeae FA19]
 gi|240115729|ref|ZP_04729791.1| Holliday junction DNA helicase RuvB [Neisseria gonorrhoeae PID18]
 gi|240118025|ref|ZP_04732087.1| Holliday junction DNA helicase RuvB [Neisseria gonorrhoeae PID1]
 gi|240121663|ref|ZP_04734625.1| Holliday junction DNA helicase RuvB [Neisseria gonorrhoeae PID24-1]
 gi|240123579|ref|ZP_04736535.1| Holliday junction DNA helicase RuvB [Neisseria gonorrhoeae PID332]
 gi|254493780|ref|ZP_05106951.1| holliday junction DNA helicase B [Neisseria gonorrhoeae 1291]
 gi|268596783|ref|ZP_06130950.1| holliday junction DNA helicase B [Neisseria gonorrhoeae FA19]
 gi|268601408|ref|ZP_06135575.1| holliday junction DNA helicase B [Neisseria gonorrhoeae PID18]
 gi|268603739|ref|ZP_06137906.1| holliday junction DNA helicase B [Neisseria gonorrhoeae PID1]
 gi|268682208|ref|ZP_06149070.1| holliday junction DNA helicase B [Neisseria gonorrhoeae PID332]
 gi|226512820|gb|EEH62165.1| holliday junction DNA helicase B [Neisseria gonorrhoeae 1291]
 gi|268550571|gb|EEZ45590.1| holliday junction DNA helicase B [Neisseria gonorrhoeae FA19]
 gi|268585539|gb|EEZ50215.1| holliday junction DNA helicase B [Neisseria gonorrhoeae PID18]
 gi|268587870|gb|EEZ52546.1| holliday junction DNA helicase B [Neisseria gonorrhoeae PID1]
 gi|268622492|gb|EEZ54892.1| holliday junction DNA helicase B [Neisseria gonorrhoeae PID332]
          Length = 343

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 194/319 (60%), Positives = 244/319 (76%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           +QE+     LRP+TL+++ GQ +A   L +FI+AAK R EALDHVL  GPPGLGKTTLA 
Sbjct: 23  AQEELLERALRPKTLDDYIGQHKAKEQLAIFIQAAKKRGEALDHVLLFGPPGLGKTTLAH 82

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++A+ELGVN R TSGPV+ +AGDLAALLTNL+  DVLFIDEIHRLS +VEEILYPA+ED+
Sbjct: 83  IIAKELGVNLRQTSGPVLERAGDLAALLTNLDPHDVLFIDEIHRLSPVVEEILYPALEDY 142

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           +LD+M+GEGP+ARSVKI+L  FTL+ ATTR G+LTNPL+DRFGI  RL FYE  DL TIV
Sbjct: 143 RLDIMIGEGPAARSVKIDLPPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYENRDLTTIV 202

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R A+L  L + +E A E+A RSRGTPRIA RLLRRVRDFA+V +   I   +ADAAL  
Sbjct: 203 SRSAQLLQLDMDEEGAMEVAKRSRGTPRIANRLLRRVRDFADVKNNGVIDAAVADAALSM 262

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D  G D +D ++L  +   FGGGPVG++ ++A + E  D IED+IEPY+IQQGF+QR
Sbjct: 263 LDVDAQGLDVMDRKFLEAVLHKFGGGPVGLDNVAAAIGESTDTIEDVIEPYLIQQGFLQR 322

Query: 313 TPRGRLLMPIAWQHLGIDI 331
           TPRGR+    A+ H G+ +
Sbjct: 323 TPRGRMATERAYLHFGLPV 341


>gi|66044658|ref|YP_234499.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv.
           syringae B728a]
 gi|81308433|sp|Q4ZWL1|RUVB_PSEU2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|63255365|gb|AAY36461.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv.
           syringae B728a]
 gi|330968890|gb|EGH68956.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 353

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 191/336 (56%), Positives = 250/336 (74%), Gaps = 2/336 (0%)

Query: 1   MMDREGLLSRN--VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M+D + L++      +++     +RP +L ++ GQ      +++FI+AA+ R+EALDH L
Sbjct: 1   MIDADRLITATGGRDRDEQMDRAIRPLSLADYIGQPTVREQMELFIQAARGRSEALDHTL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA ++A+E+GV+ +STSGPV+ + GDLAA+LTNLE  DVLFIDEIHRLS
Sbjct: 61  IFGPPGLGKTTLANIIAQEMGVSIKSTSGPVLERPGDLAAILTNLEPNDVLFIDEIHRLS 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            IVEE+LYPAMEDFQLD+M+GEGP+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  
Sbjct: 121 PIVEEVLYPAMEDFQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQ 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           RL FY I DL TIV R A + GL +  + A EIA R+RGTPRIA RLLRRVRDFAEV   
Sbjct: 181 RLEFYNIADLSTIVSRSAGILGLVIEPQGAFEIARRARGTPRIANRLLRRVRDFAEVRGN 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             ITR+ AD AL  L +D+ GFD  D R L  +   F GGPVG+++++A +SE R  IED
Sbjct: 241 GQITRQTADKALNLLDVDEHGFDHQDRRLLLTMIEKFDGGPVGVDSLAAAISEERHTIED 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           ++EPY+IQQG+I RTPRGR++   A+ H G++IP R
Sbjct: 301 VLEPYLIQQGYIMRTPRGRVVTRHAYLHFGLNIPSR 336


>gi|290475278|ref|YP_003468166.1| Holliday junction helicase subunit B [Xenorhabdus bovienii SS-2004]
 gi|289174599|emb|CBJ81393.1| Holliday junction helicase, subunit B [Xenorhabdus bovienii
           SS-2004]
          Length = 335

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 193/331 (58%), Positives = 252/331 (76%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S  V Q+D  I   +RP+ L E+ GQ   C  +++FI+AA+ R +ALDH+L 
Sbjct: 1   MIEADRLISAEVLQDDEVIDRAIRPKLLSEYVGQPHVCEQMEIFIQAARQRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPAMED+QLDLM+GEGP+ARS+KI+L  FTL+ ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEILYPAMEDYQLDLMIGEGPAARSIKIDLPPFTLVGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY ++DL++IV R A+  GL +++E A +IAMRSRGTPRI  RLLRRVRDF++V    
Sbjct: 181 LEFYNVDDLQSIVSRSARYMGLGISEEGARQIAMRSRGTPRITNRLLRRVRDFSQVKGDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           +I  +IA  AL  L++D  GFD LD + L  I   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 SINGDIAVQALDMLSVDSAGFDYLDRKLLIAIIDKFMGGPVGVDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           +EP++IQQGFIQRTPRGR+    A++H G+ 
Sbjct: 301 LEPFLIQQGFIQRTPRGRIATNHAYRHFGLS 331


>gi|145636554|ref|ZP_01792222.1| Holliday junction DNA helicase RuvB [Haemophilus influenzae PittHH]
 gi|145270379|gb|EDK10314.1| Holliday junction DNA helicase RuvB [Haemophilus influenzae PittHH]
          Length = 335

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 182/331 (54%), Positives = 243/331 (73%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + ++S    + E+     +RP+ L ++ GQ +    + +FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRIISGQAKADEEVIDRAIRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            +EE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ ATTR G LT+PL+DRFGI  R
Sbjct: 121 AIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY +EDL +IV R A    L +  +AA E+A RSRGTPRIA RLLRRVRD+A+V +  
Sbjct: 181 LEFYSVEDLTSIVARSAGCLNLELEQQAAFEVARRSRGTPRIANRLLRRVRDYADVRNGG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I+  +A  AL  L +D  GFD LD + L+ +   F GGPVG++ ++A + E RD IED+
Sbjct: 241 VISVNVAKQALSMLDVDDAGFDYLDRKLLSAVIERFDGGPVGLDNLAAAIGEERDTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           +EPY+IQQGF+QRTPRGR+     ++H G+ 
Sbjct: 301 LEPYLIQQGFLQRTPRGRIATSKTYRHFGLQ 331


>gi|330936717|gb|EGH40904.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 353

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 191/336 (56%), Positives = 250/336 (74%), Gaps = 2/336 (0%)

Query: 1   MMDREGLLSRN--VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M+D + L++      +++     +RP +L ++ GQ      +++FI+AA+ R+EALDH L
Sbjct: 1   MIDADRLITATGGRDRDEQMDRAIRPLSLADYIGQSTVREQMELFIQAARGRSEALDHTL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA ++A+E+GV+ +STSGPV+ + GDLAA+LTNLE  DVLFIDEIHRLS
Sbjct: 61  IFGPPGLGKTTLANIIAQEMGVSIKSTSGPVLERPGDLAAILTNLEPNDVLFIDEIHRLS 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            IVEE+LYPAMEDFQLD+M+GEGP+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  
Sbjct: 121 PIVEEVLYPAMEDFQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQ 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           RL FY I DL TIV R A + GL +  + A EIA R+RGTPRIA RLLRRVRDFAEV   
Sbjct: 181 RLEFYNIADLSTIVSRSAGILGLVIEPQGAFEIARRARGTPRIANRLLRRVRDFAEVRGN 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             ITR+ AD AL  L +D+ GFD  D R L  +   F GGPVG+++++A +SE R  IED
Sbjct: 241 GQITRQTADKALNLLDVDEHGFDHQDRRLLLTMIEKFDGGPVGVDSLAAAISEERHTIED 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           ++EPY+IQQG+I RTPRGR++   A+ H G++IP R
Sbjct: 301 VLEPYLIQQGYIMRTPRGRVVTRHAYLHFGLNIPSR 336


>gi|229019644|ref|ZP_04176454.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           AH1273]
 gi|229025882|ref|ZP_04182278.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           AH1272]
 gi|228735434|gb|EEL86033.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           AH1272]
 gi|228741647|gb|EEL91837.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           AH1273]
          Length = 333

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 189/333 (56%), Positives = 244/333 (73%), Gaps = 2/333 (0%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD E LLS     EDAD+   LRP+TL ++ GQ +A  NL+VFIEAAK R E LDHVL  
Sbjct: 1   MD-ERLLSGESGYEDADLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLLY 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT L+  DVLFIDEIHRL   
Sbjct: 60  GPPGLGKTTLANIIANEMGVNIRTTSGPAIERPGDLAAVLTALQPGDVLFIDEIHRLHRS 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EE+LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTR G L+ PL+DRFG+  RL
Sbjct: 120 IEEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y ++ L  IV+R A++  + +   AA EIA R+RGTPRIA RLLRRVRDFA+V    T
Sbjct: 180 EYYTVDQLSAIVERTAEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRSDGT 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I  EI   AL  L +DK+G D +D + L  I   F GGPVG+ET+SA + E    IED+ 
Sbjct: 240 IAMEITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSATIGEESHTIEDVY 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY++Q GF+QRTPRGR++ P+A++H G+++P 
Sbjct: 300 EPYLLQIGFLQRTPRGRIVTPLAYEHFGMEMPK 332


>gi|254506091|ref|ZP_05118235.1| Holliday junction DNA helicase RuvB [Vibrio parahaemolyticus 16]
 gi|219550909|gb|EED27890.1| Holliday junction DNA helicase RuvB [Vibrio parahaemolyticus 16]
          Length = 334

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 192/333 (57%), Positives = 249/333 (74%), Gaps = 3/333 (0%)

Query: 1   MMDREGLLSRNVS---QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M++ + L++       +ED     +RP+ LE++ GQ      +++FI+AA+ R EALDH+
Sbjct: 1   MIEADRLIAPENPVYREEDVIDRAIRPKKLEDYKGQDHVRDQMEIFIKAAQLREEALDHL 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRL
Sbjct: 61  LIFGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           S +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI 
Sbjct: 121 SPMVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIT 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            RL +Y+I DL+ IVQR A   GL++  E A E+A R+RGTPRIA RLLRRVRD+AEV  
Sbjct: 181 QRLEYYKIPDLQNIVQRSADCLGLSMEAEGALEVARRARGTPRIANRLLRRVRDYAEVKG 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
              I  E+AD AL  L +D  GFD +D + L  I   FGGGPVG++ ++A + E +D IE
Sbjct: 241 NGHICAEVADKALNMLDVDAQGFDYMDRKLLLAIMEKFGGGPVGLDNMAAAIGEEKDTIE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           D++EPY+IQQG++QRTPRGR+    A+ H GI+
Sbjct: 301 DVLEPYLIQQGYLQRTPRGRIATDRAYLHFGIE 333


>gi|120554624|ref|YP_958975.1| Holliday junction DNA helicase RuvB [Marinobacter aquaeolei VT8]
 gi|166231500|sp|A1U1B9|RUVB_MARAV RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|120324473|gb|ABM18788.1| Holliday junction DNA helicase RuvB [Marinobacter aquaeolei VT8]
          Length = 343

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 188/334 (56%), Positives = 246/334 (73%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S    + E+     +RP  L E+ GQ      +++FI AA+ R EALDHVL 
Sbjct: 1   MIESDRLISAKAGEYEEVHDRAIRPTLLSEYVGQPTVREQMEIFISAARGRQEALDHVLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A E+GV+ ++TSGPV+ KAGDLAA+LTNLE+ DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIIANEMGVSIKTTSGPVLEKAGDLAAMLTNLEEGDVLFIDEIHRLSA 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ ATTR GLLT+PL+DRFGI  R
Sbjct: 121 AVEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGLLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY  +DL  I+ R A+L+ + + +  A EIA RSRGTPRIA RLLRRVRDFAEV    
Sbjct: 181 LEFYNHQDLTHIITRSARLSSVEIDEAGAFEIARRSRGTPRIANRLLRRVRDFAEVRSNG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT +IAD AL  L +D  GFD +D R L  +   F GGPVG+E+++A +SE R  IED+
Sbjct: 241 HITADIADQALNMLKVDSQGFDHMDRRLLLAMIEKFDGGPVGVESLAAAISEERGTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +EP++IQQG++ RTPRGR++   A+QH G+  P 
Sbjct: 301 LEPFLIQQGYMVRTPRGRMVTSNAYQHFGVVPPR 334


>gi|311694931|gb|ADP97804.1| Holliday junction ATP-dependent DNA helicase RuvB [marine bacterium
           HP15]
          Length = 347

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 191/334 (57%), Positives = 247/334 (73%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S    + E+     +RP  L E+ GQ      + +FI AA+ R EALDHVL 
Sbjct: 5   MIESDRLISARAGEYEEVQDRAIRPTLLAEYVGQPTVREQMDIFISAARGRQEALDHVLI 64

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A E+GV+ ++TSGPV+ KAGDLAA+LTNLE+ DVLFIDEIHRLS 
Sbjct: 65  FGPPGLGKTTLANIIANEMGVSIKTTSGPVLEKAGDLAAMLTNLEEGDVLFIDEIHRLSA 124

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ ATTR GLLT+PL+DRFGI  R
Sbjct: 125 AVEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGLLTSPLRDRFGIVQR 184

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY  EDL +I+ R A+L+ +AV +  A EIA RSRGTPRIA RLLRRVRDFAEV    
Sbjct: 185 LEFYNTEDLTSIILRSARLSSVAVDEAGAFEIARRSRGTPRIANRLLRRVRDFAEVRSDG 244

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT +IAD AL  L +D  GFD +D R L  +   F GGPVG+E+++A +SE R  IED+
Sbjct: 245 RITSDIADQALNMLKVDNQGFDHMDRRLLLAMIEKFDGGPVGVESLAAAISEERGTIEDV 304

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +EP++IQQG++ RTPRGR++   A+QH G+  P 
Sbjct: 305 LEPFLIQQGYMVRTPRGRMVTSNAYQHFGVIPPK 338


>gi|307545152|ref|YP_003897631.1| Holliday junction DNA helicase B [Halomonas elongata DSM 2581]
 gi|307217176|emb|CBV42446.1| Holliday junction DNA helicase B [Halomonas elongata DSM 2581]
          Length = 340

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 183/335 (54%), Positives = 235/335 (70%), Gaps = 1/335 (0%)

Query: 1   MMDREGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+       E      +RPR L ++ GQ      L +FI AA+ R E+LDH L 
Sbjct: 1   MLETDRLIGAETRDGEGRLDHAIRPRHLSDYIGQTRVREQLDIFISAARGRGESLDHTLV 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A E+ V  ++TSGPV+ KAGDLAA+LTNL+  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIIATEMDVGLKATSGPVLEKAGDLAAMLTNLQPGDVLFIDEIHRLSA 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMEDFQLD+++GEGP+ARS+K++L  FTL+ ATTR GLLT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDFQLDIVIGEGPAARSIKLDLPPFTLVGATTRAGLLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY +E+L  IV R A L G+      A E+A R+RGTPRIA RLLRRVRDFAEV  + 
Sbjct: 181 LEFYSVEELTEIVTRSAGLLGVDSDAGGATEVARRARGTPRIANRLLRRVRDFAEVRGSG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  EIAD AL  L +D  G D +D R L  +   F GGPVG+++++A + E RD IED+
Sbjct: 241 HIDAEIADQALNMLHVDHHGLDHMDRRLLLAMIEKFDGGPVGVDSLAAAIGEERDTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           IEPY+IQQG + RT RGR++   AWQH G+    +
Sbjct: 301 IEPYLIQQGLMMRTARGRVVTRQAWQHFGLAPDDQ 335


>gi|145634689|ref|ZP_01790398.1| Holliday junction DNA helicase RuvB [Haemophilus influenzae PittAA]
 gi|145268234|gb|EDK08229.1| Holliday junction DNA helicase RuvB [Haemophilus influenzae PittAA]
          Length = 335

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 184/331 (55%), Positives = 243/331 (73%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + ++S      ED     +RP+ L ++ GQ +    + +FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRIISGQAKVDEDVIDRAIRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            +EE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ ATTR G LT+PL+DRFGI  R
Sbjct: 121 AIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY +EDL +IV R A    L +  +AA E+A RSRGTPRIA RLLRRVRD+A+V +  
Sbjct: 181 LEFYSVEDLTSIVARSADCLNLELEQQAAFEVARRSRGTPRIANRLLRRVRDYADVRNGG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I+ E+A  AL  L +D  GFD LD + L+ +   F GGPVG++ ++A + E RD IED+
Sbjct: 241 VISVEVAKQALSMLDVDDAGFDYLDRKLLSAVIERFDGGPVGLDNLAAAIGEERDTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           +EPY+IQQGF+QRTPRGR+     ++H G+ 
Sbjct: 301 LEPYLIQQGFLQRTPRGRIATSQTYRHFGLQ 331


>gi|268589736|ref|ZP_06123957.1| holliday junction DNA helicase RuvB [Providencia rettgeri DSM 1131]
 gi|291314888|gb|EFE55341.1| holliday junction DNA helicase RuvB [Providencia rettgeri DSM 1131]
          Length = 336

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 195/335 (58%), Positives = 251/335 (74%), Gaps = 2/335 (0%)

Query: 1   MMDREGLLSRNV--SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M++ + L++  V  S E+A    +RP+ L E+ GQ +    +++FI+AAK R +ALDH+L
Sbjct: 1   MIEADRLITAEVLQSDEEAIDRAIRPKLLNEYIGQPQVKDQMEIFIQAAKMRGDALDHLL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA +VA ELGVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS
Sbjct: 61  IFGPPGLGKTTLAGIVANELGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLS 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            +VEEILYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  
Sbjct: 121 PVVEEILYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQ 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           RL FY+++DL+ IV+R A+  GL +T+E A ++AMRSRGTPRI  RLLRRVRDFA+V   
Sbjct: 181 RLEFYQVDDLQHIVKRSAQYMGLDITEEGALQVAMRSRGTPRITNRLLRRVRDFAQVKGD 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
            +I   IA+ AL  L +D  GFD LD + L  I   F GGPVG++ ++A + E R+ IED
Sbjct: 241 GSIDGLIANQALDMLNVDAAGFDYLDRKLLVAIIDKFMGGPVGVDNLAAAIGEERETIED 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           ++EPY+IQQGFIQRTPRGR+    A+ H G+    
Sbjct: 301 VLEPYLIQQGFIQRTPRGRMATVHAYNHFGLTPKE 335


>gi|269967686|ref|ZP_06181736.1| Holliday junction DNA helicase RuvB [Vibrio alginolyticus 40B]
 gi|269827773|gb|EEZ82057.1| Holliday junction DNA helicase RuvB [Vibrio alginolyticus 40B]
          Length = 359

 Score =  378 bits (970), Expect = e-103,   Method: Composition-based stats.
 Identities = 190/332 (57%), Positives = 247/332 (74%), Gaps = 3/332 (0%)

Query: 1   MMDREGLLSRNVS---QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M++ + L++        ED     +RP+ L ++ GQ      +++FI+AA+ R+EALDH+
Sbjct: 28  MIEADRLIAPENPAFRDEDVIDRAIRPKKLADYQGQDHVRDQMEIFIKAAQLRSEALDHL 87

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTLA +VA E+ VN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRL
Sbjct: 88  LIFGPPGLGKTTLANIVANEMEVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRL 147

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           S +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI 
Sbjct: 148 SPMVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIT 207

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            RL FY+I+DL+ IVQR A   GL++  E A E+A R+RGTPRIA RLLRRVRD+AEV  
Sbjct: 208 QRLEFYKIKDLQDIVQRSADCLGLSMEPEGALEVARRARGTPRIANRLLRRVRDYAEVKG 267

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
              I  ++AD AL  L +D  GFD +D + L  I   FGGGPVG++ ++A + E +D IE
Sbjct: 268 NGHICADVADKALNMLDVDAEGFDYMDRKLLLAIMEKFGGGPVGLDNMAAAIGEEKDTIE 327

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           D++EPY+IQQG++QRTPRGR+    A+ H GI
Sbjct: 328 DVLEPYLIQQGYLQRTPRGRIATDRAYLHFGI 359


>gi|293603636|ref|ZP_06686057.1| crossover junction ATP-dependent DNA helicase RuvB [Achromobacter
           piechaudii ATCC 43553]
 gi|292818072|gb|EFF77132.1| crossover junction ATP-dependent DNA helicase RuvB [Achromobacter
           piechaudii ATCC 43553]
          Length = 369

 Score =  378 bits (970), Expect = e-103,   Method: Composition-based stats.
 Identities = 186/332 (56%), Positives = 237/332 (71%), Gaps = 2/332 (0%)

Query: 3   DREGLLSRNV--SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           D   +++       E++    LRP+ L+E+ GQ  A   L++FI AA+ R EALDHVL  
Sbjct: 25  DAPRIVAPQPVSPNEESIERALRPKALQEYVGQQRAREQLEIFIAAARKRGEALDHVLLF 84

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A E+GV  R TSGPV+ + GDLAALLTNLE  DVLFIDEIHRLS +
Sbjct: 85  GPPGLGKTTLAHIIAHEMGVQLRQTSGPVLERPGDLAALLTNLEKNDVLFIDEIHRLSPV 144

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILYPA+EDFQ+D+++GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL
Sbjct: 145 VEEILYPALEDFQIDILIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVSRL 204

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY   DL  IV R A L    +T + A E+A R+RGTPRIA RLLRRVRD+AEV  + T
Sbjct: 205 EFYNATDLGHIVTRSAGLLNATITPDGAAEVARRARGTPRIANRLLRRVRDYAEVKASGT 264

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I  ++A  AL  L +D  G D +D + L  I   F GGPVG+++++A + E RD IED+I
Sbjct: 265 IDADVAGRALAMLEVDPQGLDLMDRKLLEAIIHKFDGGPVGVDSLAAAIGEERDTIEDVI 324

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EPY+IQ G++QRTPRGR      W+HLG+  P
Sbjct: 325 EPYLIQHGYLQRTPRGRTATLSTWRHLGLAPP 356


>gi|261211908|ref|ZP_05926195.1| holliday junction DNA helicase RuvB [Vibrio sp. RC341]
 gi|260839258|gb|EEX65890.1| holliday junction DNA helicase RuvB [Vibrio sp. RC341]
          Length = 334

 Score =  378 bits (970), Expect = e-103,   Method: Composition-based stats.
 Identities = 187/333 (56%), Positives = 244/333 (73%), Gaps = 3/333 (0%)

Query: 1   MMDREGLLSR---NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M++ + L++    +   E+     +RP+ L ++ GQ      +++FI AA+ R EALDH+
Sbjct: 1   MIEADRLIAPVNHSFKDEEVIDRAIRPKKLADYQGQDHVRDQMEIFIMAAQQRQEALDHL 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRL
Sbjct: 61  LIFGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           S +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI 
Sbjct: 121 SPMVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIV 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            RL +Y + DL+ IVQR A   GL++  E A E+A R+RGTPRIA RLLRRVRD+AEV  
Sbjct: 181 QRLEYYNVADLQNIVQRSAHCLGLSMDGEGALEVARRARGTPRIANRLLRRVRDYAEVKG 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
              I  E AD AL  L +D  GFD +D + L  I   F GGPVG++ +SA + E +D IE
Sbjct: 241 NGHICAETADKALNMLDVDHQGFDYMDRKLLLAIMEKFSGGPVGLDNLSAAIGEEKDTIE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           D++EP++IQQG++QRTPRGR+    A+ H G++
Sbjct: 301 DVLEPFLIQQGYLQRTPRGRIATDRAYLHFGLE 333


>gi|209517514|ref|ZP_03266354.1| Holliday junction DNA helicase RuvB [Burkholderia sp. H160]
 gi|209502047|gb|EEA02063.1| Holliday junction DNA helicase RuvB [Burkholderia sp. H160]
          Length = 353

 Score =  378 bits (970), Expect = e-103,   Method: Composition-based stats.
 Identities = 194/331 (58%), Positives = 246/331 (74%), Gaps = 2/331 (0%)

Query: 5   EGLLSRNV--SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           E +++       E+A    LRPR L+E+ GQ +    L++FIEAAK R+E+LDHVL  GP
Sbjct: 10  ERIIAATPVSPNEEAFERALRPRQLDEYVGQEKVRGQLEIFIEAAKRRSESLDHVLLFGP 69

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++ARE+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VE
Sbjct: 70  PGLGKTTLAHIIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVE 129

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILYPA+ED+Q+D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL F
Sbjct: 130 EILYPALEDYQIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEF 189

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  E+L  IV R A L    +  + A EIA R+RGTPRIA RLLRRVRDFAEV     IT
Sbjct: 190 YNAEELARIVTRSASLLRAQIHPDGALEIARRARGTPRIANRLLRRVRDFAEVKADGNIT 249

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            ++ADAAL  L +D +GFD +D + L  I   F GGPVG++ ++A + E RD IED++EP
Sbjct: 250 AQVADAALRMLDVDAVGFDLMDRKLLEAILYKFDGGPVGVDNLAAAIGEERDTIEDVLEP 309

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           Y+IQQGF+QRTPRGR+   + ++H G+  P 
Sbjct: 310 YLIQQGFLQRTPRGRVATLLTYRHFGLAAPD 340


>gi|125972706|ref|YP_001036616.1| Holliday junction DNA helicase RuvB [Clostridium thermocellum ATCC
           27405]
 gi|256004865|ref|ZP_05429839.1| Holliday junction DNA helicase RuvB [Clostridium thermocellum DSM
           2360]
 gi|281416894|ref|ZP_06247914.1| Holliday junction DNA helicase RuvB [Clostridium thermocellum JW20]
 gi|166231487|sp|A3DBU4|RUVB_CLOTH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|125712931|gb|ABN51423.1| Holliday junction DNA helicase subunit RuvB [Clostridium
           thermocellum ATCC 27405]
 gi|255991175|gb|EEU01283.1| Holliday junction DNA helicase RuvB [Clostridium thermocellum DSM
           2360]
 gi|281408296|gb|EFB38554.1| Holliday junction DNA helicase RuvB [Clostridium thermocellum JW20]
 gi|316941058|gb|ADU75092.1| Holliday junction DNA helicase RuvB [Clostridium thermocellum DSM
           1313]
          Length = 330

 Score =  378 bits (970), Expect = e-103,   Method: Composition-based stats.
 Identities = 184/328 (56%), Positives = 241/328 (73%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
            + L+   +S+ED D   LRPR   E+ GQ +   NL VFIEAAK R EALDHVL  GPP
Sbjct: 2   EDRLVGCRLSEEDVDEVSLRPRKFGEYIGQTKVKENLMVFIEAAKKRNEALDHVLLYGPP 61

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++A ELGVN R TSGP I K GDLAA+LTNL + DVLFIDEIHRL+  VEE
Sbjct: 62  GLGKTTLAGIIASELGVNLRITSGPAIEKPGDLAAILTNLGNFDVLFIDEIHRLNRSVEE 121

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILYPAMED+ LD+++G+GPSARS++++L +FTLI ATTR GLLT+PL+DRFG+  +L  Y
Sbjct: 122 ILYPAMEDYALDIIIGKGPSARSIRLDLPKFTLIGATTRAGLLTSPLRDRFGVINKLELY 181

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            +E+L  IV+R A++  + + DEAA EIA R+RGTPR+A R+L+R+RDFA+V     IT+
Sbjct: 182 SVEELGQIVKRSARILNVGIEDEAAEEIARRARGTPRVANRILKRIRDFAQVKSDGFITK 241

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           EIA   L  L +D++G D +D   L  I   FGGGPVG++T++A + E  D IED+ EPY
Sbjct: 242 EIARTGLEALEVDEIGLDAVDRNLLMSIIEKFGGGPVGLDTLAATIGEEPDTIEDVYEPY 301

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           ++Q GFI +TPRGR+   +A++H G+  
Sbjct: 302 LLQLGFINKTPRGRMATKLAYEHFGLKY 329


>gi|146306304|ref|YP_001186769.1| Holliday junction DNA helicase B [Pseudomonas mendocina ymp]
 gi|166231540|sp|A4XRS1|RUVB_PSEMY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|145574505|gb|ABP84037.1| Holliday junction DNA helicase RuvB [Pseudomonas mendocina ymp]
          Length = 350

 Score =  378 bits (970), Expect = e-103,   Method: Composition-based stats.
 Identities = 192/335 (57%), Positives = 252/335 (75%), Gaps = 1/335 (0%)

Query: 1   MMDREGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L++ +  + E+     +RP  L ++ GQ      +++FI+AA+ RAE+LDH L 
Sbjct: 1   MIEADRLITASPREREEQQDRAIRPLKLADYIGQPGVREQMELFIQAARGRAESLDHTLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A+E+GV+ +STSGPV+ + GDLAALLTNLE  DVLF+DEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIIAQEMGVSIKSTSGPVLERPGDLAALLTNLEAGDVLFVDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           IVEE+LYPAMEDFQLD+M+GEGP+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  R
Sbjct: 121 IVEEVLYPAMEDFQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY I+DL TIV R A + GL + D+ A EIA R+RGTPRIA RLLRRVRDFAEV    
Sbjct: 181 LEFYGIDDLATIVTRSAGILGLPIEDQGAYEIARRARGTPRIANRLLRRVRDFAEVRGRG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            ITREIAD AL  L +D+ GFD  D R L  +   F GGPVG+++++A +SE R  IED+
Sbjct: 241 HITREIADQALNLLDVDERGFDHSDRRLLLAMIEKFDGGPVGVDSLAAAISEERHTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           +EPY+IQQG++ RTPRGR++   A+ H G++ P R
Sbjct: 301 LEPYLIQQGYMMRTPRGRVVTRHAYLHFGLNTPKR 335


>gi|257095746|ref|YP_003169387.1| Holliday junction DNA helicase RuvB [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257048270|gb|ACV37458.1| Holliday junction DNA helicase RuvB [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 354

 Score =  378 bits (970), Expect = e-103,   Method: Composition-based stats.
 Identities = 197/328 (60%), Positives = 248/328 (75%), Gaps = 2/328 (0%)

Query: 5   EGLLSR--NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           + LLS     +QE+A    LRPR L ++ GQ +    L +FIEAA+ R + LDHVL  GP
Sbjct: 13  DRLLSPVSKSTQEEAIERALRPRCLADYVGQAKIREQLSIFIEAARRRNDTLDHVLLFGP 72

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA +VA E+GVN RSTSGPV+ +AGDLAA+LTNLE RDVLFIDEIHRLS +VE
Sbjct: 73  PGLGKTTLAHIVAAEMGVNLRSTSGPVLERAGDLAAILTNLEPRDVLFIDEIHRLSPVVE 132

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILYPA+EDFQ+D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL F
Sbjct: 133 EILYPALEDFQIDIMIGEGPAARSVKLDLPPFTLVGATTRAGMLTNPLRDRFGIVSRLEF 192

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  E+L  IV R ++L  + +  E A EIA RSRGTPRIA RLLRRVRDFAEV     I+
Sbjct: 193 YTPEELTLIVTRSSQLLKVPIDQEGALEIARRSRGTPRIANRLLRRVRDFAEVRANGQIS 252

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           RE+AD ALL L +D  G D +D + L+ +   FGGGPVG++ ++A + E RD IED++EP
Sbjct: 253 REVADLALLMLDVDHGGLDVMDRKLLSAVIDKFGGGPVGVDNLAAAIGEARDTIEDVLEP 312

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           ++IQQGF+QRTPRGR+     ++HLG+D
Sbjct: 313 FLIQQGFLQRTPRGRVATAAVYRHLGLD 340


>gi|329903092|ref|ZP_08273366.1| Holliday junction DNA helicase RuvB [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327548501|gb|EGF33170.1| Holliday junction DNA helicase RuvB [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 351

 Score =  378 bits (970), Expect = e-103,   Method: Composition-based stats.
 Identities = 189/325 (58%), Positives = 239/325 (73%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           +     E+A    LRP+ L+E+ GQ +    L +FI AAK R EALDH L  GPPGLGKT
Sbjct: 17  TPASPNEEAIERALRPKQLDEYVGQEKIRDQLSIFITAAKQRREALDHTLLFGPPGLGKT 76

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           TLA ++ARE+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA
Sbjct: 77  TLAHIIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPA 136

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +ED+Q+D+M+GEGP+ARSV+++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY   +L
Sbjct: 137 LEDYQIDIMIGEGPAARSVRLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTATEL 196

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             IV R A L    +  E A EIA RSRGTPRIA RLLRRVRD+AEV     IT+  ADA
Sbjct: 197 ARIVTRSASLLNAPIDPEGAFEIAKRSRGTPRIANRLLRRVRDYAEVKSNGDITKATADA 256

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL+ L +D +GFD +D + L  +   F GGPVG++ ++A + E R+ IED++EPY+IQQG
Sbjct: 257 ALVMLDVDPVGFDLMDRKLLEAVLFKFSGGPVGLDNLAAAIGEERETIEDVLEPYLIQQG 316

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIPH 333
           ++QRTPRGR+  P+A+ H G+  P 
Sbjct: 317 YLQRTPRGRIATPLAYTHFGVAAPR 341


>gi|26987952|ref|NP_743377.1| Holliday junction DNA helicase RuvB [Pseudomonas putida KT2440]
 gi|37999645|sp|Q88NJ0|RUVB_PSEPK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|24982664|gb|AAN66841.1|AE016312_12 Holliday junction DNA helicase RuvB [Pseudomonas putida KT2440]
 gi|313497568|gb|ADR58934.1| RuvB [Pseudomonas putida BIRD-1]
          Length = 348

 Score =  378 bits (970), Expect = e-103,   Method: Composition-based stats.
 Identities = 188/335 (56%), Positives = 250/335 (74%), Gaps = 1/335 (0%)

Query: 1   MMDREGLLSRN-VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L++ +   +E+     +RP +L+E+ GQ      + +FI+AA+ R E+LDH L 
Sbjct: 1   MIEADRLIAASGRDREEVQDRAIRPLSLDEYIGQPVVREQMALFIQAARGRGESLDHTLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A E+GV+ +STSGP++ + GDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIIAHEMGVSVKSTSGPILERPGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMEDFQLD+M+GEGP+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDFQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY  +DL TIV R A + GLA+ D+ A EIA R+RGTPRIA RLLRRVRD+AEV    
Sbjct: 181 LEFYNDKDLSTIVSRSANILGLAIEDQGAYEIARRARGTPRIANRLLRRVRDYAEVRGKG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT+ +AD AL  L +D+ GFD  D R L  +   F GGPVG++ ++A +SE R  IED+
Sbjct: 241 QITKAVADMALNLLDVDERGFDHSDRRLLLTMIEKFDGGPVGVDNLAAAISEERHTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           +EPY+IQQG+I RTPRGR++   A+ H G++IP R
Sbjct: 301 LEPYLIQQGYIMRTPRGRVVTRHAYLHFGLNIPGR 335


>gi|238762968|ref|ZP_04623935.1| Holliday junction DNA helicase RuvB [Yersinia kristensenii ATCC
           33638]
 gi|238698726|gb|EEP91476.1| Holliday junction DNA helicase RuvB [Yersinia kristensenii ATCC
           33638]
          Length = 334

 Score =  378 bits (970), Expect = e-103,   Method: Composition-based stats.
 Identities = 193/330 (58%), Positives = 246/330 (74%), Gaps = 1/330 (0%)

Query: 1   MMDREGLLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S  V S E++    +RP+ L E+ GQ      +++FI+AAK R +ALDHVL 
Sbjct: 1   MIEADRLISAGVISDEESIDRAIRPKLLAEYVGQPHVREQMEIFIQAAKQRGDALDHVLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IV R AK  GL +T E A ++A RSRGTPRI  RLLRRVRDFAEV    
Sbjct: 181 LEFYQVADLEHIVARSAKCLGLELTAEGAHQLARRSRGTPRITNRLLRRVRDFAEVRADG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  ++A  AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 AINGDVAMKALDMLNVDAEGFDFMDRKLLLAVIDKFMGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           +EPY+IQQGFIQRTPRGR+    A++H GI
Sbjct: 301 LEPYLIQQGFIQRTPRGRIATNHAYKHFGI 330


>gi|310816583|ref|YP_003964547.1| Holliday junction DNA helicase RuvB [Ketogulonicigenium vulgare
           Y25]
 gi|308755318|gb|ADO43247.1| Holliday junction DNA helicase RuvB [Ketogulonicigenium vulgare
           Y25]
          Length = 340

 Score =  378 bits (970), Expect = e-103,   Method: Composition-based stats.
 Identities = 212/333 (63%), Positives = 260/333 (78%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M++ +  L  +   ED     LRP+ L+EF GQ EA +NL++FIE+A+ R EA+DH LF 
Sbjct: 1   MIESDPTLRADPLPEDNPDRALRPQGLDEFVGQAEARANLRIFIESARRRGEAMDHTLFH 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++ARELGV FR TSGPV+AK GDLAA+LTNLE RDVLFIDEIHRLS +
Sbjct: 61  GPPGLGKTTLAQIMARELGVGFRMTSGPVLAKPGDLAAILTNLEPRDVLFIDEIHRLSPV 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDF LDL++GEGP+AR+V+I+L  FTL+ ATTR+GLLT PL+DRFGIP RL
Sbjct: 121 VEEVLYPAMEDFALDLVIGEGPAARTVRIDLQPFTLVGATTRLGLLTTPLRDRFGIPTRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY IE+L  IV+RGA+L G+   D+ A EIA R+RGTPRIAGRLLRRV DFA V     
Sbjct: 181 EFYTIEELNLIVRRGARLLGVPTDDDGAREIARRARGTPRIAGRLLRRVVDFALVEGDGR 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I+  +AD AL RL +D +G D  D RYL MI   F GGPVGIETI+A LSE RDAIE++I
Sbjct: 241 ISHALADMALTRLGVDDLGLDGADRRYLNMIGDTFAGGPVGIETIAAALSESRDAIEEVI 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY++QQG IQR+PRGR+L   AW+H+G++ P 
Sbjct: 301 EPYLLQQGLIQRSPRGRVLTLAAWRHIGLEPPR 333


>gi|122066015|sp|Q817W4|RUVB_BACCR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
          Length = 336

 Score =  378 bits (970), Expect = e-103,   Method: Composition-based stats.
 Identities = 185/330 (56%), Positives = 242/330 (73%), Gaps = 1/330 (0%)

Query: 5   EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E LLSR  +  DA     LRP+TL ++ GQ +A  NL+VFIEAAK R E LDHVL  GPP
Sbjct: 6   ERLLSRESAYGDAVEDFPLRPQTLRQYIGQNKAKHNLEVFIEAAKMREETLDHVLLYGPP 65

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++A E+GVN ++TSGP I + GDLAA+LT L+  DVLFIDEIHRL   +EE
Sbjct: 66  GLGKTTLANIIANEMGVNVKTTSGPAIGRPGDLAAVLTALQPGDVLFIDEIHRLHRSIEE 125

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTR G L+ PL+DRFG+  R+ +Y
Sbjct: 126 VLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSRVEYY 185

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            ++ L  IV+R A++  + +   AA EIA R+RGTPRIA RLLRRVRDFA+V    T+T 
Sbjct: 186 TVDQLSAIVERTAEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRGNGTVTM 245

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           EI   AL  L +DK+G D +D + L  I   F GGPVG+ET+SA + E    IED+ EPY
Sbjct: 246 EITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSAPIGEESHTIEDVYEPY 305

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           ++Q GF+QRTPRGR++ P+A++H G++IP 
Sbjct: 306 LLQIGFLQRTPRGRIVTPLAYEHFGMEIPK 335


>gi|120612873|ref|YP_972551.1| Holliday junction DNA helicase RuvB [Acidovorax citrulli AAC00-1]
 gi|166231458|sp|A1TUY9|RUVB_ACIAC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|120591337|gb|ABM34777.1| Holliday junction DNA helicase RuvB [Acidovorax citrulli AAC00-1]
          Length = 354

 Score =  378 bits (970), Expect = e-103,   Method: Composition-based stats.
 Identities = 187/326 (57%), Positives = 237/326 (72%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           +    QE+A    LRP+ L+E+ GQ +A   L++FI AA+ R EALDHVL  GPPGLGKT
Sbjct: 21  APTSPQEEALERALRPKLLQEYVGQAKAREQLEIFIGAARKREEALDHVLLFGPPGLGKT 80

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           TL+ ++A ELGVN R TSGPV+ K  DLAALLTNLE  DVLFIDEIHRLS +VEEILYPA
Sbjct: 81  TLSHIIAAELGVNLRQTSGPVLEKPKDLAALLTNLEKNDVLFIDEIHRLSPVVEEILYPA 140

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +ED+Q+D+M+GEGP+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  E+L
Sbjct: 141 LEDYQIDIMIGEGPAARSIKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTPEEL 200

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             IV R A L    +  + A EIA RSRGTPRIA RLLRRVRD+A+V     IT++IA  
Sbjct: 201 SRIVTRSAGLLNAPIDAQGAFEIARRSRGTPRIANRLLRRVRDYADVKGDGRITQDIAQR 260

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL  L +D  GFD +D + L  +   F GGPVG++ I+A + E    IED+IEPY+IQQG
Sbjct: 261 ALAMLDVDPQGFDVMDRKLLEAVVHRFDGGPVGLDNIAASIGEEPGTIEDVIEPYLIQQG 320

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIPHR 334
           ++QRTPRGR+    A++HLG+    +
Sbjct: 321 YLQRTPRGRIATLAAFRHLGVAPSRQ 346


>gi|323496590|ref|ZP_08101643.1| Holliday junction DNA helicase RuvB [Vibrio sinaloensis DSM 21326]
 gi|323318336|gb|EGA71294.1| Holliday junction DNA helicase RuvB [Vibrio sinaloensis DSM 21326]
          Length = 334

 Score =  378 bits (970), Expect = e-103,   Method: Composition-based stats.
 Identities = 190/333 (57%), Positives = 250/333 (75%), Gaps = 3/333 (0%)

Query: 1   MMDREGLLSRNVS---QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M++ + L++ +     +ED     +RP+ LE++ GQ      +++FI+AA+ R EALDH+
Sbjct: 1   MIEADRLIAPDNPVYREEDVIDRAIRPKKLEDYKGQDHVRDQMEIFIKAAQLREEALDHL 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRL
Sbjct: 61  LIFGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           S +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI 
Sbjct: 121 SPMVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIT 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            RL +Y+I DL+ IVQR A   GL++  + A E+A R+RGTPRIA RLLRRVRD+AEV  
Sbjct: 181 QRLEYYKIPDLQNIVQRSADCLGLSMEADGALEVARRARGTPRIANRLLRRVRDYAEVKG 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
              I  ++AD AL  L +D  GFD +D + L  I   FGGGPVG++ ++A + E +D IE
Sbjct: 241 NGHICADVADKALNMLDVDAQGFDYMDRKLLLAIMEKFGGGPVGLDNMAAAIGEEKDTIE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           D++EPY+IQQG++QRTPRGR+    A+ H GI+
Sbjct: 301 DVLEPYLIQQGYLQRTPRGRIATDRAYLHFGIE 333


>gi|163802050|ref|ZP_02195946.1| Holliday junction DNA helicase B [Vibrio sp. AND4]
 gi|159174191|gb|EDP58999.1| Holliday junction DNA helicase B [Vibrio sp. AND4]
          Length = 334

 Score =  378 bits (970), Expect = e-103,   Method: Composition-based stats.
 Identities = 189/333 (56%), Positives = 246/333 (73%), Gaps = 3/333 (0%)

Query: 1   MMDREGLLSRNVS---QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M++ + L++        ED     +RP+ L ++ GQ      +++FI+AA+ R EALDH+
Sbjct: 1   MIEADRLIAPENPSFRDEDVIDRAIRPKKLADYQGQDHVRDQMEIFIKAAQQRNEALDHL 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTLA +VA E+ VN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRL
Sbjct: 61  LIFGPPGLGKTTLANIVANEMEVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           S +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI 
Sbjct: 121 SPMVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIT 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            RL +Y+++DLK IVQR A   GL++  E A E+A R+RGTPRIA RLLRRVRD+AEV  
Sbjct: 181 QRLEYYKVQDLKDIVQRSADCLGLSMEPEGALEVARRARGTPRIANRLLRRVRDYAEVKG 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
              I  + AD AL  L +D  GFD +D + L  I   FGGGPVG++ ++A + E +D IE
Sbjct: 241 NGHICADTADKALNMLDVDAKGFDYMDRKLLLAIMEKFGGGPVGLDNMAAAIGEEKDTIE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           D++EPY+IQQG++QRTPRGR+    A+ H GI+
Sbjct: 301 DVLEPYLIQQGYLQRTPRGRIATDRAYLHFGIE 333


>gi|308187171|ref|YP_003931302.1| Holliday junction ATP-dependent DNA helicase ruvB [Pantoea vagans
           C9-1]
 gi|308057681|gb|ADO09853.1| Holliday junction ATP-dependent DNA helicase ruvB [Pantoea vagans
           C9-1]
          Length = 334

 Score =  378 bits (970), Expect = e-103,   Method: Composition-based stats.
 Identities = 191/331 (57%), Positives = 253/331 (76%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSR-NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S  ++++E+     +RP+ L E+ GQ +    +++FI+AA+ R +ALDH+L 
Sbjct: 1   MIEADRLVSAASINEEEIIDRAIRPKMLTEYVGQPQVREQMEIFIKAAQLRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY+++DL+ IV R A   GLA++DE A EIA R+RGTPRIA RLLRRVRDFAEV    
Sbjct: 181 LEFYQVKDLQHIVGRSAACLGLALSDEGALEIARRARGTPRIANRLLRRVRDFAEVRANG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            ++ E++ +AL  L +D  GFD +D + L  I   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 DMSGEVSCSALDMLNVDSEGFDYMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           IEP++IQQGFIQRTPRGRL    A++H GI 
Sbjct: 301 IEPFLIQQGFIQRTPRGRLATQHAYRHFGIT 331


>gi|302187156|ref|ZP_07263829.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv.
           syringae 642]
          Length = 353

 Score =  378 bits (970), Expect = e-103,   Method: Composition-based stats.
 Identities = 192/336 (57%), Positives = 250/336 (74%), Gaps = 2/336 (0%)

Query: 1   MMDREGLLSRN--VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M+D + L++      +++     +RP +L ++ GQ      +++FI+AA+ R+EALDH L
Sbjct: 1   MIDADRLITATGGRDRDEQMDRAIRPLSLADYIGQPTVREQMELFIQAARGRSEALDHTL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA ++A+E+GV+ +STSGPV+ + GDLAA+LTNLE  DVLFIDEIHRLS
Sbjct: 61  IFGPPGLGKTTLANIIAQEMGVSIKSTSGPVLERPGDLAAILTNLEPNDVLFIDEIHRLS 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            IVEE+LYPAMEDFQLD+M+GEGP+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  
Sbjct: 121 PIVEEVLYPAMEDFQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQ 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           RL FY I DL TIV R A + GL +  + A EIA R+RGTPRIA RLLRRVRDFAEV   
Sbjct: 181 RLEFYNIADLSTIVSRSAGILGLVIEPQGAFEIARRARGTPRIANRLLRRVRDFAEVRGN 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             ITR+ AD AL  L +D+ GFD  D R L  +   F GGPVGI++++A +SE R  IED
Sbjct: 241 GQITRQTADKALNLLDVDEHGFDHQDRRLLLTMIEKFDGGPVGIDSLAAAISEERHTIED 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           ++EPY+IQQG+I RTPRGR++   A+ H G++IP R
Sbjct: 301 VLEPYLIQQGYIMRTPRGRVVTRHAYLHFGLNIPSR 336


>gi|240112975|ref|ZP_04727465.1| Holliday junction DNA helicase RuvB [Neisseria gonorrhoeae MS11]
 gi|268599055|ref|ZP_06133222.1| holliday junction DNA helicase RuvB [Neisseria gonorrhoeae MS11]
 gi|268583186|gb|EEZ47862.1| holliday junction DNA helicase RuvB [Neisseria gonorrhoeae MS11]
          Length = 343

 Score =  378 bits (970), Expect = e-103,   Method: Composition-based stats.
 Identities = 194/319 (60%), Positives = 244/319 (76%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           +QE+     LRP+TL+++ GQ +A   L +FI+AAK R EALDHVL  GPPGLGKTTLA 
Sbjct: 23  AQEELLERALRPKTLDDYIGQHKAKEQLAIFIQAAKKRGEALDHVLLFGPPGLGKTTLAH 82

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++A+ELGVN R TSGPV+ +AGDLAALLTNL+  DVLFIDEIHRLS +VEEILYPA+ED+
Sbjct: 83  IIAKELGVNLRQTSGPVLERAGDLAALLTNLDPHDVLFIDEIHRLSPVVEEILYPALEDY 142

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           +LD+M+GEGP+ARSVKI+L  FTL+ ATTR G+LTNPL+DRFGI  RL FYE  DL TIV
Sbjct: 143 RLDIMIGEGPAARSVKIDLPPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYENCDLTTIV 202

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R A+L  L + +E A E+A RSRGTPRIA RLLRRVRDFA+V +   I   +ADAAL  
Sbjct: 203 SRSAQLLQLDMGEEGAMEVAKRSRGTPRIANRLLRRVRDFADVKNNGVIDAAVADAALSM 262

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D  G D +D ++L  +   FGGGPVG++ ++A + E  D IED+IEPY+IQQGF+QR
Sbjct: 263 LDVDAQGLDVMDRKFLEAVLHKFGGGPVGLDNVAAAIGESTDTIEDVIEPYLIQQGFLQR 322

Query: 313 TPRGRLLMPIAWQHLGIDI 331
           TPRGR+    A+ H G+ +
Sbjct: 323 TPRGRMATERAYLHFGLPV 341


>gi|308049715|ref|YP_003913281.1| Holliday junction DNA helicase RuvB [Ferrimonas balearica DSM 9799]
 gi|307631905|gb|ADN76207.1| Holliday junction DNA helicase RuvB [Ferrimonas balearica DSM 9799]
          Length = 336

 Score =  378 bits (970), Expect = e-103,   Method: Composition-based stats.
 Identities = 198/332 (59%), Positives = 253/332 (76%), Gaps = 2/332 (0%)

Query: 1   MMDREGLLSRNVS--QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M++ + L++   +  +E+     +RP+ L ++TGQ EA + L+VFI+AA+ R EALDH+L
Sbjct: 1   MIEADRLVAAPTASREEEVIDRAMRPKMLTDYTGQDEAKAQLEVFIQAARNRGEALDHLL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA +VA E+GVN +STSGPV+ KAGDLAALLTNLE  DVLFIDEIHRLS
Sbjct: 61  IFGPPGLGKTTLANIVANEMGVNIKSTSGPVLEKAGDLAALLTNLEPHDVLFIDEIHRLS 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            +VEE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+ RFGIP+
Sbjct: 121 PVVEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGALTSPLRARFGIPL 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           RL FY + DL  IVQR A++  L++  + A EIA RSRGTPRIA RLLRRVRDFAEV   
Sbjct: 181 RLEFYNVRDLTQIVQRSAEVLDLSMEGDGAVEIARRSRGTPRIANRLLRRVRDFAEVKFD 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             IT E+A  AL  L +DK GFD LD + LT I   F GGPVG+E ++A + E R+ IED
Sbjct: 241 GVITAEVAAKALDLLDVDKEGFDYLDRKLLTTIIDKFSGGPVGLENLAAAIGEERETIED 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           ++EP++IQQGF+QRTPRGR+    A+QH G+ 
Sbjct: 301 VLEPFLIQQGFLQRTPRGRIATDRAYQHFGLP 332


>gi|59801175|ref|YP_207887.1| Holliday junction DNA helicase B [Neisseria gonorrhoeae FA 1090]
 gi|194098681|ref|YP_002001743.1| Holliday junction DNA helicase RuvB [Neisseria gonorrhoeae
           NCCP11945]
 gi|239998989|ref|ZP_04718913.1| Holliday junction DNA helicase RuvB [Neisseria gonorrhoeae 35/02]
 gi|240125761|ref|ZP_04738647.1| Holliday junction DNA helicase RuvB [Neisseria gonorrhoeae
           SK-92-679]
 gi|240128283|ref|ZP_04740944.1| Holliday junction DNA helicase RuvB [Neisseria gonorrhoeae
           SK-93-1035]
 gi|260440459|ref|ZP_05794275.1| Holliday junction DNA helicase RuvB [Neisseria gonorrhoeae DGI2]
 gi|268594837|ref|ZP_06129004.1| holliday junction DNA helicase B [Neisseria gonorrhoeae 35/02]
 gi|268684359|ref|ZP_06151221.1| holliday junction DNA helicase B [Neisseria gonorrhoeae SK-92-679]
 gi|268686680|ref|ZP_06153542.1| holliday junction DNA helicase B [Neisseria gonorrhoeae SK-93-1035]
 gi|291043758|ref|ZP_06569474.1| holliday junction DNA helicase RuvB [Neisseria gonorrhoeae DGI2]
 gi|293399043|ref|ZP_06643208.1| Holliday junction DNA helicase RuvB [Neisseria gonorrhoeae F62]
 gi|81311201|sp|Q5F8L2|RUVB_NEIG1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|238690208|sp|B4RLV8|RUVB_NEIG2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|59718070|gb|AAW89475.1| putative Holliday junction DNA helicase [Neisseria gonorrhoeae FA
           1090]
 gi|193933971|gb|ACF29795.1| Holliday junction DNA helicase RuvB [Neisseria gonorrhoeae
           NCCP11945]
 gi|268548226|gb|EEZ43644.1| holliday junction DNA helicase B [Neisseria gonorrhoeae 35/02]
 gi|268624643|gb|EEZ57043.1| holliday junction DNA helicase B [Neisseria gonorrhoeae SK-92-679]
 gi|268626964|gb|EEZ59364.1| holliday junction DNA helicase B [Neisseria gonorrhoeae SK-93-1035]
 gi|291012221|gb|EFE04210.1| holliday junction DNA helicase RuvB [Neisseria gonorrhoeae DGI2]
 gi|291610457|gb|EFF39567.1| Holliday junction DNA helicase RuvB [Neisseria gonorrhoeae F62]
 gi|317164281|gb|ADV07822.1| Holliday junction DNA helicase RuvB [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 343

 Score =  378 bits (970), Expect = e-103,   Method: Composition-based stats.
 Identities = 194/319 (60%), Positives = 244/319 (76%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           +QE+     LRP+TL+++ GQ +A   L +FI+AAK R EALDHVL  GPPGLGKTTLA 
Sbjct: 23  AQEELLERALRPKTLDDYIGQHKAKEQLAIFIQAAKKRGEALDHVLLFGPPGLGKTTLAH 82

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++A+ELGVN R TSGPV+ +AGDLAALLTNL+  DVLFIDEIHRLS +VEEILYPA+ED+
Sbjct: 83  IIAKELGVNLRQTSGPVLERAGDLAALLTNLDPHDVLFIDEIHRLSPVVEEILYPALEDY 142

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           +LD+M+GEGP+ARSVKI+L  FTL+ ATTR G+LTNPL+DRFGI  RL FYE  DL TIV
Sbjct: 143 RLDIMIGEGPAARSVKIDLPPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYENRDLTTIV 202

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R A+L  L + +E A E+A RSRGTPRIA RLLRRVRDFA+V +   I   +ADAAL  
Sbjct: 203 SRSAQLLQLDMGEEGAMEVAKRSRGTPRIANRLLRRVRDFADVKNNGVIDAAVADAALSM 262

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D  G D +D ++L  +   FGGGPVG++ ++A + E  D IED+IEPY+IQQGF+QR
Sbjct: 263 LDVDAQGLDVMDRKFLEAVLHKFGGGPVGLDNVAAAIGESTDTIEDVIEPYLIQQGFLQR 322

Query: 313 TPRGRLLMPIAWQHLGIDI 331
           TPRGR+    A+ H G+ +
Sbjct: 323 TPRGRMATERAYLHFGLPV 341


>gi|319896644|ref|YP_004134837.1| holliday junction DNA helicase ruvb [Haemophilus influenzae F3031]
 gi|317432146|emb|CBY80497.1| holliday junction DNA helicase RuvB [Haemophilus influenzae F3031]
          Length = 335

 Score =  377 bits (969), Expect = e-103,   Method: Composition-based stats.
 Identities = 184/331 (55%), Positives = 243/331 (73%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + ++S      ED     +RP+ L ++ GQ + C  + +FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRIISGQAKVDEDVIDRAIRPKLLADYVGQPQVCEQMDIFIKAAKLRQDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            +EE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ ATTR G LT+PL+DRFGI  R
Sbjct: 121 AIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY +EDL +IV R A    L +  +AA E+A RSRGTPRIA RLLRRVRD+A+V +  
Sbjct: 181 LEFYSVEDLTSIVARSAGCLNLELEQQAAFEVARRSRGTPRIANRLLRRVRDYADVRNGG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I+  +A  AL  L +D  GFD LD + L+ +   F GGPVG++ ++A + E RD IED+
Sbjct: 241 IISINVAKQALSMLDVDDAGFDYLDRKLLSAVIERFDGGPVGLDNLAAAIGEERDTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           +EPY+IQQGF+QRTPRGR+     ++H G+ 
Sbjct: 301 LEPYLIQQGFLQRTPRGRIATSQTYRHFGLQ 331


>gi|303230229|ref|ZP_07316997.1| Holliday junction DNA helicase RuvB [Veillonella atypica
           ACS-134-V-Col7a]
 gi|303231817|ref|ZP_07318533.1| Holliday junction DNA helicase RuvB [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302513524|gb|EFL55550.1| Holliday junction DNA helicase RuvB [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302515155|gb|EFL57129.1| Holliday junction DNA helicase RuvB [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 334

 Score =  377 bits (969), Expect = e-103,   Method: Composition-based stats.
 Identities = 194/330 (58%), Positives = 241/330 (73%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M +   L+     +ED     LRP+   E+ GQ EA  NL ++I+A K R EALDHVL  
Sbjct: 1   MNEEVRLVGGGDREEDVWQYSLRPKYFNEYIGQREAKDNLNIYIQATKQRGEALDHVLLY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A ELGVNFR TSGP I KAGDLAA+LTNL++ DVLFIDEIHRLS  
Sbjct: 61  GPPGLGKTTLAGIIANELGVNFRITSGPAIEKAGDLAAILTNLDEHDVLFIDEIHRLSRS 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LY AMED+ LD+++G+GPSARSV+I+L +FTL+ ATTR G L  PL+DRFGI  RL
Sbjct: 121 VEEVLYSAMEDYALDIIIGKGPSARSVRIDLPKFTLVGATTRAGALAAPLRDRFGIVSRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y+ E+L+ IV R A +  + +    A EIA RSRGTPRIA RLL+RVRDFA+V     
Sbjct: 181 EYYKQEELEFIVTRAADILNIGIEQAGASEIARRSRGTPRIANRLLKRVRDFAQVVGNGV 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           IT +IAD AL RL +DKMG D++D R L  I  N+ GGPVGIETI+A +SE RD IED+ 
Sbjct: 241 ITADIADEALKRLHVDKMGLDRIDRRVLKCIIENYDGGPVGIETIAAAVSEERDTIEDVY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           EPY++Q GF+ RTPRGR+   +A+ HLGI 
Sbjct: 301 EPYLMQLGFLGRTPRGRVATKLAYDHLGIS 330


>gi|291533855|emb|CBL06968.1| Holliday junction DNA helicase, RuvB subunit [Megamonas hypermegale
           ART12/1]
          Length = 334

 Score =  377 bits (969), Expect = e-103,   Method: Composition-based stats.
 Identities = 183/331 (55%), Positives = 239/331 (72%), Gaps = 1/331 (0%)

Query: 1   MMD-REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M D  E ++S      D     LRP+ L+E+ GQ +   NL +FI+AA  R EALDHVL 
Sbjct: 1   MEDFNERIVSGGEMDIDNWQYSLRPKKLQEYIGQDKVKDNLSIFIQAALNRNEALDHVLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A E+GVNFR TSGP I ++GDLAALLTNL ++DVLFIDEIHRLS 
Sbjct: 61  YGPPGLGKTTLANIIANEMGVNFRVTSGPAIERSGDLAALLTNLTEKDVLFIDEIHRLSH 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEE+LY AMEDF LD+++G+GPSARS++++++ FTLI ATT+ G L +PL+DRFG+  R
Sbjct: 121 SVEEVLYSAMEDFALDIIIGKGPSARSIRLDIAPFTLIGATTKAGALASPLRDRFGVISR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y  E L  I++R A++  + + D  A EIA RSRGTPR+A RLL+RVRDFA++    
Sbjct: 181 LEYYTPESLVFIIKRSAEILNIPIEDRGALEIARRSRGTPRVANRLLKRVRDFAQIKGDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT EIAD AL  L IDKMG D +D   L  +   FGGGPVG+ET++A +SE  D I D+
Sbjct: 241 IITDEIADTALAMLEIDKMGLDHIDRNILLTMINKFGGGPVGLETLAAAVSEETDTIGDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
            EPY++Q GFI RTPRGR++  + ++HLG+ 
Sbjct: 301 YEPYLLQLGFINRTPRGRVVTKLGYEHLGLT 331


>gi|292488537|ref|YP_003531421.1| Holliday junction ATP-dependent DNA helicase ruvB [Erwinia
           amylovora CFBP1430]
 gi|292899713|ref|YP_003539082.1| Holliday junction DNA helicase [Erwinia amylovora ATCC 49946]
 gi|291199561|emb|CBJ46678.1| Holliday junction DNA helicase [Erwinia amylovora ATCC 49946]
 gi|291553968|emb|CBA21013.1| Holliday junction ATP-dependent DNA helicase ruvB [Erwinia
           amylovora CFBP1430]
 gi|312172680|emb|CBX80936.1| Holliday junction ATP-dependent DNA helicase ruvB [Erwinia
           amylovora ATCC BAA-2158]
          Length = 334

 Score =  377 bits (969), Expect = e-103,   Method: Composition-based stats.
 Identities = 195/331 (58%), Positives = 251/331 (75%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L++  V ++E+     +RP+ LEE+ GQ      +++FI+AA+ R +ALDH+L 
Sbjct: 1   MIEADRLVAAGVITEEEVIDRAIRPKMLEEYVGQQVVREQMEIFIKAAQMRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY +EDL+ IV R A   GL ++DE A EIA R+RGTPRIA RLLRRVRDFAEV  A 
Sbjct: 181 LEFYRVEDLQHIVGRSAACLGLPLSDEGALEIARRARGTPRIANRLLRRVRDFAEVRAAG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            ++ E+A  AL  L++D  GFD +D + L  I   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 EMSGEVASRALDMLSVDSQGFDYMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           +EPY+IQQGFIQRTPRGRL    A+QH GI 
Sbjct: 301 LEPYLIQQGFIQRTPRGRLATQHAYQHFGIT 331


>gi|167571208|ref|ZP_02364082.1| Holliday junction DNA helicase B [Burkholderia oklahomensis C6786]
          Length = 356

 Score =  377 bits (969), Expect = e-103,   Method: Composition-based stats.
 Identities = 195/331 (58%), Positives = 247/331 (74%), Gaps = 2/331 (0%)

Query: 5   EGLL--SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           E ++  +   + E+A    LRPR L+E+ GQ +    L++FIEAAK R+EALDHVL  GP
Sbjct: 10  ERIIAATPASTHEEAFERALRPRQLDEYVGQEKVRDQLEIFIEAAKRRSEALDHVLLFGP 69

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++ARE+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VE
Sbjct: 70  PGLGKTTLAHIIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVE 129

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILYPA+ED+Q+D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL F
Sbjct: 130 EILYPALEDYQIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEF 189

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y+ E L  IV+R A L    +    A EIA RSRGTPRIA RLLRRVRD+AEV    +IT
Sbjct: 190 YDAEQLSRIVRRSAALLNAQIDPNGALEIAKRSRGTPRIANRLLRRVRDYAEVRADGSIT 249

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             +ADAAL  L +D +GFD +D + L  I   F GGPVG++ ++A + E RD IED++EP
Sbjct: 250 VAVADAALAMLDVDPVGFDLMDRKLLEAILHKFDGGPVGVDNLAAAIGEERDTIEDVLEP 309

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           Y+IQQGF+QRTPRGR+   + ++H G+  P 
Sbjct: 310 YLIQQGFLQRTPRGRVATLLTYRHFGLSAPD 340


>gi|158422143|ref|YP_001523435.1| Holliday junction DNA helicase RuvB [Azorhizobium caulinodans ORS
           571]
 gi|172048037|sp|A8IMA7|RUVB_AZOC5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|158329032|dbj|BAF86517.1| holliday junction DNA helicase [Azorhizobium caulinodans ORS 571]
          Length = 350

 Score =  377 bits (969), Expect = e-103,   Method: Composition-based stats.
 Identities = 221/329 (67%), Positives = 277/329 (84%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            L++ +   ED   + LRP+ L +F GQ +A +NL+VFI+AA+AR EALDHVLFVGPPGL
Sbjct: 10  RLMTADSRPEDDADATLRPQRLADFVGQAQARANLEVFIQAARARGEALDHVLFVGPPGL 69

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLAQ++ARE+GV FRSTSGPVIAKAGDLAA+LTNLE+RDVLFIDEIHRL+  VEEIL
Sbjct: 70  GKTTLAQIMAREMGVGFRSTSGPVIAKAGDLAAILTNLEERDVLFIDEIHRLAPQVEEIL 129

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           YPAMED++LDL++GEGP+ARSVKI+L +FTL+ ATTR GLLT PL+DRFGIP+RL FY +
Sbjct: 130 YPAMEDYELDLVIGEGPAARSVKISLPKFTLVGATTRSGLLTTPLRDRFGIPVRLVFYTL 189

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           E+L+ IV RGA+L G+ +  E A EIA R+RGTPRIAGRLLRRVRDFA+ A A+ I R I
Sbjct: 190 EELEYIVTRGARLLGIGIVPEGAREIARRARGTPRIAGRLLRRVRDFAQFAGAEAIDRAI 249

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           AD AL+ L +D MG D +D RYLT+IA+++GGGPVG+ET++A LSEPRDAIE+++EPY++
Sbjct: 250 ADRALMALDVDAMGLDTMDRRYLTVIAQHYGGGPVGVETLAAALSEPRDAIEEIVEPYLV 309

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           QQGF+QRTPRGR+L   A++HLG+  P R
Sbjct: 310 QQGFVQRTPRGRMLTSGAFRHLGLAEPQR 338


>gi|160934126|ref|ZP_02081513.1| hypothetical protein CLOLEP_02989 [Clostridium leptum DSM 753]
 gi|156866799|gb|EDO60171.1| hypothetical protein CLOLEP_02989 [Clostridium leptum DSM 753]
          Length = 350

 Score =  377 bits (969), Expect = e-103,   Method: Composition-based stats.
 Identities = 190/330 (57%), Positives = 227/330 (68%), Gaps = 1/330 (0%)

Query: 4   REGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
              ++      EDADI   LRPRTL E+ GQ +A  NL VFIEAAK R E+LDHVL  GP
Sbjct: 8   ENRIVDPEDIPEDADIENPLRPRTLSEYIGQEKAKENLSVFIEAAKLRHESLDHVLLYGP 67

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++A EL VN R TSGP I K GDLAALLTNL   DVLFIDEIHRLS  VE
Sbjct: 68  PGLGKTTLAGIIANELNVNIRITSGPAIEKPGDLAALLTNLNSGDVLFIDEIHRLSRSVE 127

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILYPAMEDF +D++ G+G  A S  + L +FTL+ ATTR G LT PL+DRFG+ +RL  
Sbjct: 128 EILYPAMEDFAIDIITGKGQMAASYHLPLPKFTLVGATTRAGQLTAPLRDRFGVVLRLEM 187

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  E+L TIV R AK+ G+    E A EIA RSRGTPRIA RLL+RVRDFA+V     IT
Sbjct: 188 YTPEELATIVSRSAKILGIETNQEGALEIASRSRGTPRIANRLLKRVRDFAQVMSDGVIT 247

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            E A  AL +L ID++G D  D R L  + R + GGPVG+ET++A + E    IED+ EP
Sbjct: 248 YETAKVALDKLEIDELGLDGNDRRMLETLIRFYKGGPVGLETLAAAIGEEAVTIEDVYEP 307

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           Y++Q GF+ RTPRGR     A+ HLG+  P
Sbjct: 308 YLMQIGFLSRTPRGRCATHAAYLHLGMTPP 337


>gi|319775820|ref|YP_004138308.1| holliday junction DNA helicase RuvB [Haemophilus influenzae F3047]
 gi|329123664|ref|ZP_08252224.1| crossover junction ATP-dependent DNA helicase RuvB [Haemophilus
           aegyptius ATCC 11116]
 gi|317450411|emb|CBY86627.1| holliday junction DNA helicase RuvB [Haemophilus influenzae F3047]
 gi|327469863|gb|EGF15328.1| crossover junction ATP-dependent DNA helicase RuvB [Haemophilus
           aegyptius ATCC 11116]
          Length = 335

 Score =  377 bits (969), Expect = e-103,   Method: Composition-based stats.
 Identities = 183/331 (55%), Positives = 243/331 (73%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + ++S      ED     +RP+ L ++ GQ +    + +FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRIISGQAKVDEDVIDRAIRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            +EE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ ATTR G LT+PL+DRFGI  R
Sbjct: 121 AIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY +EDL +IV R A    L +  +AA E+A RSRGTPRIA RLLRRVRD+A+V +  
Sbjct: 181 LEFYSVEDLTSIVARSADCLNLELEQQAAFEVARRSRGTPRIANRLLRRVRDYADVRNGG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I+ ++A  AL  L +D  GFD LD + L+ +   F GGPVG++ ++A + E RD IED+
Sbjct: 241 VISVDVAKQALSMLDVDDAGFDYLDRKLLSAVIERFDGGPVGLDNLAAAIGEERDTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           +EPY+IQQGF+QRTPRGR+     ++H G+ 
Sbjct: 301 LEPYLIQQGFLQRTPRGRIATSQTYRHFGLQ 331


>gi|266625273|ref|ZP_06118208.1| holliday junction DNA helicase RuvB [Clostridium hathewayi DSM
           13479]
 gi|288862828|gb|EFC95126.1| holliday junction DNA helicase RuvB [Clostridium hathewayi DSM
           13479]
          Length = 331

 Score =  377 bits (969), Expect = e-103,   Method: Composition-based stats.
 Identities = 175/330 (53%), Positives = 241/330 (73%), Gaps = 2/330 (0%)

Query: 2   MDREGLLSRNVSQEDAD-ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M+R  +++  V++ED      LRP++L E+ GQ +  +NLKV+I+AAKAR E+LDHVLF 
Sbjct: 1   MER-RIITTEVTEEDKRTEPNLRPQSLNEYIGQEKLKANLKVYIDAAKARGESLDHVLFY 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTL+ ++A E+GVN + TSGP I K G++AA+L NL++ DVLF+DEIHRL+  
Sbjct: 60  GPPGLGKTTLSGIIANEMGVNMKVTSGPAIEKPGEMAAILNNLQEGDVLFVDEIHRLNRQ 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMED+ +D+M+G+  +ARS++++L RFTL+ ATTR GLLT PL+DRFG+  ++
Sbjct: 120 VEEVLYPAMEDYAIDIMLGKDSAARSIRLDLPRFTLVGATTRAGLLTAPLRDRFGVVQKM 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  ++L+ IV   AK+  + +  E A EIA RSRGTPR+A RLL+RVRDFA+V +   
Sbjct: 180 EFYTPKELEIIVCHSAKVLEVEIEPEGAAEIAKRSRGTPRLANRLLKRVRDFAQVKYHGV 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           IT+E+AD AL  L +DK G D  D   LT +   F GGPVG+ET++A L E    +ED+ 
Sbjct: 240 ITKEVADFALDILDVDKFGLDNNDRAILTTMIEKFSGGPVGLETLAASLGEDAGTLEDVY 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           EPY++  GFI RTPRGR+    A+ HLG+ 
Sbjct: 300 EPYLLMNGFINRTPRGRVATERAYHHLGLT 329


>gi|160879482|ref|YP_001558450.1| Holliday junction DNA helicase B [Clostridium phytofermentans ISDg]
 gi|189046027|sp|A9KP49|RUVB_CLOPH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|160428148|gb|ABX41711.1| Holliday junction DNA helicase RuvB [Clostridium phytofermentans
           ISDg]
          Length = 336

 Score =  377 bits (969), Expect = e-103,   Method: Composition-based stats.
 Identities = 170/330 (51%), Positives = 240/330 (72%), Gaps = 1/330 (0%)

Query: 6   GLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
            +++  + +ED  +   LRP+ LE++ GQ +A  NLKV+IEAAK R E+LDHVLF GPPG
Sbjct: 4   RMITTELMEEDVKLETSLRPQMLEDYIGQKKAKENLKVYIEAAKQRKESLDHVLFFGPPG 63

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLA ++A E+GVN ++T+GP I K GD+AA+L NL++ DVLFIDEIHRL+  VEE+
Sbjct: 64  LGKTTLAGIIANEMGVNLKTTAGPAIEKPGDMAAILNNLQEGDVLFIDEIHRLNRQVEEL 123

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPAMED+ +D+++G+G +A+S++++L RFTL+ ATTR G+LT PL+DRFG+  RL FY 
Sbjct: 124 LYPAMEDYVIDIVIGKGATAKSIRLDLPRFTLVGATTRAGMLTAPLRDRFGVVHRLEFYT 183

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            E+LK I+ R AK+  + + D  A E+A RSRGTPR+A RLL+RVRDFA+V +   IT E
Sbjct: 184 TEELKEIITRSAKVLQVEIDDCGATELARRSRGTPRLANRLLKRVRDFAQVKYDGRITEE 243

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +A  AL  L +DK+G D +D + L  +   F GGPVGI+ I+  + E    +E++ EPY+
Sbjct: 244 VARFALDILEVDKLGLDHIDRQILVTMIEKFAGGPVGIDAIATTIGEDSGTVEEVYEPYL 303

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           +Q G I RTPRGR++   A+ H G+   ++
Sbjct: 304 VQNGLILRTPRGRVVTQEAYLHCGLPYENK 333


>gi|56477679|ref|YP_159268.1| Holliday junction DNA helicase RuvB [Aromatoleum aromaticum EbN1]
 gi|81821098|sp|Q5P2U7|RUVB_AZOSE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|56313722|emb|CAI08367.1| Holliday junction DNA helicase [Aromatoleum aromaticum EbN1]
          Length = 353

 Score =  377 bits (969), Expect = e-103,   Method: Composition-based stats.
 Identities = 196/341 (57%), Positives = 247/341 (72%), Gaps = 7/341 (2%)

Query: 1   MMDRE-----GLLSRNVS--QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEA 53
           M++ +      ++S   +  QED     LRP+ L E+ GQ +    L++FI+AAK R EA
Sbjct: 1   MIETDKLQAPRVISAQTADRQEDVVERALRPKRLAEYVGQAKIREQLEIFIQAAKNRHEA 60

Query: 54  LDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDE 113
           LDHVL  GPPGLGKTTLA +VA E+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDE
Sbjct: 61  LDHVLLFGPPGLGKTTLAHIVAAEMGVNLRQTSGPVLERAGDLAALLTNLEPHDVLFIDE 120

Query: 114 IHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           IHRLS +VEEILYPA+EDFQ+D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DR
Sbjct: 121 IHRLSPVVEEILYPALEDFQIDIMIGEGPAARSVKLDLPPFTLVGATTRAGMLTNPLRDR 180

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
           FGI  RL FY   +L  IV R A L  +A+ D  A EIA R+RGTPRIA RLLRRVRD+A
Sbjct: 181 FGIVARLEFYTPHELAYIVGRSAGLLDVAIDDAGAVEIARRARGTPRIANRLLRRVRDYA 240

Query: 234 EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
           +V     IT  +ADAALL L +D +G D +D + L  +   FGGGPVG++ ++A + E  
Sbjct: 241 QVKADGDITAPVADAALLMLDVDHLGLDLMDRKLLGAMLEKFGGGPVGLDNLAAAIGESS 300

Query: 294 DAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           D IED++EPY+IQQG++QRTPRGR+     WQH G+  P R
Sbjct: 301 DTIEDVLEPYLIQQGYLQRTPRGRIASASIWQHFGLAFPRR 341


>gi|302671007|ref|YP_003830967.1| holliday junction DNA helicase RuvB [Butyrivibrio proteoclasticus
           B316]
 gi|302395480|gb|ADL34385.1| holliday junction DNA helicase RuvB [Butyrivibrio proteoclasticus
           B316]
          Length = 343

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 171/328 (52%), Positives = 244/328 (74%), Gaps = 1/328 (0%)

Query: 8   LSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           +    +QEDA I   LRP+ L+ + GQ +   +LK++IEAAK R ++LDH+LF GPPGLG
Sbjct: 13  IDTAANQEDARIEGSLRPKRLDNYIGQKKIKESLKIYIEAAKKRGDSLDHLLFYGPPGLG 72

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTTLA ++A E+GVN + TSGP I K GD+AA+L NL++ DVLF+DEIHRL+  VEE+LY
Sbjct: 73  KTTLAGIIAAEMGVNIKITSGPAIEKPGDMAAILNNLQEGDVLFVDEIHRLNRQVEEVLY 132

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           PAMED+ +D+M+G+GP+ARS++++L  FTLI ATTR G+L+ PL+DRFG+  R+ +Y+I+
Sbjct: 133 PAMEDYAIDIMIGKGPTARSIRLDLPHFTLIGATTRAGMLSAPLRDRFGMIHRMEYYDID 192

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +L TI+ + A + G+ V ++ A E+A RSRGTPR+A R+L+RVRDFA+V +   IT +IA
Sbjct: 193 ELSTIIMQSAGVLGVEVDEKGAVEMARRSRGTPRLANRILKRVRDFAQVKYDGRITEDIA 252

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
             AL  + +DKMG D  D   L  +   FGGGPVG++T++A + E    IED+ EPY+I+
Sbjct: 253 ITALDLMDVDKMGLDHTDRNLLMTMIGKFGGGPVGLDTLAAAIGEDSGTIEDVYEPYLIK 312

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
            GF+ RTPRGR++   A+ HLG+++P R
Sbjct: 313 NGFLNRTPRGRVVTEEAYHHLGLEMPAR 340


>gi|89068046|ref|ZP_01155463.1| Holliday junction DNA helicase RuvB [Oceanicola granulosus
           HTCC2516]
 gi|89046285|gb|EAR52342.1| Holliday junction DNA helicase RuvB [Oceanicola granulosus
           HTCC2516]
          Length = 342

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 218/333 (65%), Positives = 265/333 (79%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M + + ++      ED D   LRP+TL+EF GQ EA +NLKVFIE+A+ R EA+DHVLF 
Sbjct: 1   MEEPDPIVRPERQAEDGD-RALRPQTLDEFIGQAEARANLKVFIESARRRGEAMDHVLFH 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++ARELGV+FR TSGPV+AKAGDLAA+LTNLE RDVLFIDEIHRL+  
Sbjct: 60  GPPGLGKTTLAQIMARELGVSFRMTSGPVLAKAGDLAAILTNLEARDVLFIDEIHRLNPA 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPA+EDF+LDL++GEGP+AR+V+I L  FTL+ ATTR+GLLT PL+DRFGIP RL
Sbjct: 120 VEEVLYPALEDFELDLVIGEGPAARTVRIELQPFTLVGATTRLGLLTTPLRDRFGIPTRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY +E+L  IV RGA+L G   TD  A EIA R+RGTPRIAGRLLRRV DFA V    T
Sbjct: 180 QFYSVEELHEIVTRGARLLGAPATDGGAREIARRARGTPRIAGRLLRRVVDFAVVEGDGT 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +T+ IAD AL RL +D +G D  D RYL +IA ++GGGPVGIET+SA LSE RDA+E++I
Sbjct: 240 VTQAIADRALTRLGVDTLGLDGADRRYLQLIAESYGGGPVGIETLSAALSESRDALEEVI 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY++QQG IQRTPRGR+L   AW+HLG+  P 
Sbjct: 300 EPYLLQQGLIQRTPRGRMLAEGAWRHLGLAAPR 332


>gi|83592425|ref|YP_426177.1| Holliday junction DNA helicase RuvB [Rhodospirillum rubrum ATCC
           11170]
 gi|97190249|sp|Q2RVF5|RUVB_RHORT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|83575339|gb|ABC21890.1| Holliday junction DNA helicase RuvB [Rhodospirillum rubrum ATCC
           11170]
          Length = 350

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 213/330 (64%), Positives = 267/330 (80%), Gaps = 1/330 (0%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           + E L+S    + + D + LRP++L +F GQ +   NL VF++AA+AR EA+DHVLF GP
Sbjct: 7   EDERLISGRRREGEVD-AALRPQSLADFVGQRQTRENLGVFVQAARARGEAMDHVLFHGP 65

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLAQ+VARELGV FR TSGP+I KAGDLAA+LTNLE RDVLFIDEIHRL+  +E
Sbjct: 66  PGLGKTTLAQIVARELGVGFRGTSGPMIVKAGDLAAILTNLEPRDVLFIDEIHRLNPAIE 125

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMEDFQLDL++GEGP+ARSV+I+L  FTL+ ATTR GLLT PL+DRFGIP+RL+F
Sbjct: 126 EVLYPAMEDFQLDLIIGEGPAARSVRIDLPPFTLVGATTRSGLLTTPLRDRFGIPLRLDF 185

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           YE ++L  IV RG++L G+A+TDE A E+A RSRGTPR+AGRLLRRVRDFA VA    + 
Sbjct: 186 YETDELVQIVTRGSRLLGMALTDEGAREVARRSRGTPRVAGRLLRRVRDFAAVAGRSPVD 245

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             IADAAL RL +D  G D +D RYL+ +A ++GGGPVG++T++A L+E RD +ED+IEP
Sbjct: 246 AFIADAALNRLEVDGRGLDAMDRRYLSRMADHYGGGPVGVDTLAAALAEERDTVEDVIEP 305

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           Y+IQQGFI+RTPRGR+L  IAW HLG+  P
Sbjct: 306 YLIQQGFIKRTPRGRMLTAIAWTHLGLTPP 335


>gi|255065913|ref|ZP_05317768.1| holliday junction DNA helicase RuvB [Neisseria sicca ATCC 29256]
 gi|255049824|gb|EET45288.1| holliday junction DNA helicase RuvB [Neisseria sicca ATCC 29256]
          Length = 343

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 195/329 (59%), Positives = 246/329 (74%), Gaps = 2/329 (0%)

Query: 5   EGLLSRNV--SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           + +++     SQE+     LRP+TL+++ GQ +A   L +FI+AAK R EALDH L  GP
Sbjct: 13  QRIITAQSISSQEELLERALRPKTLDDYIGQDKAKEQLAIFIQAAKKRGEALDHTLLFGP 72

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++A+ELGVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VE
Sbjct: 73  PGLGKTTLAHIIAKELGVNLRQTSGPVLERAGDLAALLTNLEPHDVLFIDEIHRLSPVVE 132

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILYPA+ED+QLD+M+GEGP+ARSVKI+L  FTL+ ATTR G+LTNPL+DRFGI  RL F
Sbjct: 133 EILYPALEDYQLDIMIGEGPAARSVKIDLPPFTLVGATTRAGMLTNPLRDRFGIVARLEF 192

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y+ +DL TIV R A+L  L + +E A E+A RSRGTPRIA RLLRRVRDFA+V +   I 
Sbjct: 193 YQNQDLATIVSRSAQLLQLDMGEEGAMEVAKRSRGTPRIANRLLRRVRDFADVKNNGVID 252

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             IADAAL  L +D  G D +D ++L  I   F GGPVG++ ++A + E  D IED+IEP
Sbjct: 253 AAIADAALSMLDVDAQGLDVMDRKFLEAILHKFSGGPVGLDNVAAAIGESTDTIEDVIEP 312

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           Y+IQQGF+QRTPRGR+     + H G+ +
Sbjct: 313 YLIQQGFLQRTPRGRMATERTYLHFGLKM 341


>gi|83312315|ref|YP_422579.1| Holliday junction DNA helicase RuvB [Magnetospirillum magneticum
           AMB-1]
 gi|97190129|sp|Q2W2A5|RUVB_MAGMM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|82947156|dbj|BAE52020.1| Holliday junction resolvasome, helicase subunit [Magnetospirillum
           magneticum AMB-1]
          Length = 347

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 210/328 (64%), Positives = 266/328 (81%), Gaps = 1/328 (0%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            ++S   +  DA++S LRP++L++F GQ + C NLKVFI AA+AR EALDHVLF GPPGL
Sbjct: 4   RVVSPEQNPNDAEMS-LRPQSLDDFVGQRQVCENLKVFISAARARGEALDHVLFHGPPGL 62

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLAQ++ARELGV FR+TSGPVI +AGDLAALLTNLE RDVLFIDEIHRL+  +EE+L
Sbjct: 63  GKTTLAQIMARELGVGFRATSGPVIQRAGDLAALLTNLEPRDVLFIDEIHRLNPAIEEVL 122

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           YPAMEDFQLDL++GEGP+ARSV+I L  FTL+ ATTR GLLT PL++RFGIP R+NFYE 
Sbjct: 123 YPAMEDFQLDLIIGEGPAARSVRIELPPFTLVGATTRSGLLTTPLRERFGIPCRMNFYEP 182

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
            +L+ IV RGA++ G A+T + A E+A RSRGTPR+AGRLLRRVRDFA VA    +   +
Sbjct: 183 AELEAIVSRGARVLGFALTPDGAAEVARRSRGTPRVAGRLLRRVRDFAVVAGRSPVDALV 242

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           ADAAL RL +D++G D +D RYL  IA N+GGGPVG+ET++A LSE RD +E+++EPY++
Sbjct: 243 ADAALNRLEVDRIGLDAMDRRYLRCIAENYGGGPVGVETLAAALSESRDTLEEVVEPYLL 302

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           QQG IQRTPRGR+L    ++H+G++ P 
Sbjct: 303 QQGMIQRTPRGRMLSASGFKHIGLNPPK 330


>gi|237809450|ref|YP_002893890.1| Holliday junction DNA helicase RuvB [Tolumonas auensis DSM 9187]
 gi|259495681|sp|C4LBN0|RUVB_TOLAT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|237501711|gb|ACQ94304.1| Holliday junction DNA helicase RuvB [Tolumonas auensis DSM 9187]
          Length = 337

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 191/335 (57%), Positives = 251/335 (74%), Gaps = 1/335 (0%)

Query: 1   MMDREGLLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L++    ++E+     +RP+ L ++ GQ +  S +++FIEAA+ R+EALDHVL 
Sbjct: 1   MIEADRLIAPAAITEEEQLDRAIRPKMLSDYRGQDQVRSQMEIFIEAARRRSEALDHVLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN ++TSGPV+ KAGDLAALLTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNIKTTSGPVLEKAGDLAALLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+K+ L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKLELPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++EDL  IV R A + GL++  + A EIA R+RGTPRIA RLLRRVRDFAE+    
Sbjct: 181 LEFYKVEDLAHIVGRSADVLGLSLDQQGAFEIAKRARGTPRIANRLLRRVRDFAEIRSDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I+ +IA  AL  L +D  GFD +D + L  I   F GGPVG++ ++A + E ++ IED+
Sbjct: 241 HISDQIAAQALDMLDVDNAGFDYMDRKLLLAIIDKFLGGPVGVDNLAAAIGEEKETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           +EPY+IQQGF+QRTPRGR+  P A+ H G+  P R
Sbjct: 301 LEPYLIQQGFLQRTPRGRIATPRAYLHFGLTTPER 335


>gi|167623852|ref|YP_001674146.1| Holliday junction DNA helicase RuvB [Shewanella halifaxensis
           HAW-EB4]
 gi|189046049|sp|B0TSA7|RUVB_SHEHH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|167353874|gb|ABZ76487.1| Holliday junction DNA helicase RuvB [Shewanella halifaxensis
           HAW-EB4]
          Length = 337

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 199/336 (59%), Positives = 255/336 (75%), Gaps = 3/336 (0%)

Query: 1   MMDREGLLSRNV---SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M++ + L+   +    + +A    +RP+ L+E+TGQ +  + LK+FIEAA+ R EALDH+
Sbjct: 1   MIEADRLIHPQIIDREEAEAVDRAMRPKMLDEYTGQDDTRAQLKIFIEAAQKRGEALDHM 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTLA +VA E+GVN +STSGPV+ KAGDLAALLTNLE  DVLFIDEIHRL
Sbjct: 61  LIYGPPGLGKTTLAMIVANEMGVNIKSTSGPVLEKAGDLAALLTNLEPNDVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           S +VEEILYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ ATTR G LT+PL+ RFGIP
Sbjct: 121 SPVVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGALTSPLRARFGIP 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
           +RL FY ++DL +IV R AK+  L + DE A EIA RSRGTPRIA RLLRRVRDFAEV H
Sbjct: 181 LRLEFYNVKDLSSIVARSAKVMALEIDDEGAVEIARRSRGTPRIANRLLRRVRDFAEVKH 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
           +  +T+ IA+AAL  L +D  GFD +D + L  I   F GGPVG++ ++A + E R+ IE
Sbjct: 241 SGDVTKVIAEAALDMLDVDAEGFDYMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETIE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           D++EP++IQQGFIQRTPRGR+  P A+ H  I  P 
Sbjct: 301 DVLEPFLIQQGFIQRTPRGRIATPRAYNHFNIIKPD 336


>gi|28897826|ref|NP_797431.1| Holliday junction DNA helicase RuvB [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153839743|ref|ZP_01992410.1| holliday junction DNA helicase RuvB [Vibrio parahaemolyticus
           AQ3810]
 gi|260361756|ref|ZP_05774781.1| holliday junction DNA helicase RuvB [Vibrio parahaemolyticus K5030]
 gi|260876985|ref|ZP_05889340.1| holliday junction DNA helicase RuvB [Vibrio parahaemolyticus
           AN-5034]
 gi|31076901|sp|Q87QU7|RUVB_VIBPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|28806039|dbj|BAC59315.1| holliday junction DNA helicase RuvB [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149746741|gb|EDM57729.1| holliday junction DNA helicase RuvB [Vibrio parahaemolyticus
           AQ3810]
 gi|308093890|gb|EFO43585.1| holliday junction DNA helicase RuvB [Vibrio parahaemolyticus
           AN-5034]
 gi|308113263|gb|EFO50803.1| holliday junction DNA helicase RuvB [Vibrio parahaemolyticus K5030]
          Length = 334

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 188/333 (56%), Positives = 248/333 (74%), Gaps = 3/333 (0%)

Query: 1   MMDREGLLSRNVS---QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M++ + L++        ED     +RP+ L ++ GQ      +++FI+AA+ R+EALDH+
Sbjct: 1   MIEADRLIAPENPAFRDEDVIDRAIRPKKLADYQGQDHVRDQMEIFIKAAQLRSEALDHL 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTLA +VA E+ VN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRL
Sbjct: 61  LIFGPPGLGKTTLANIVANEMEVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           S +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI 
Sbjct: 121 SPMVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIT 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            RL +Y+++DL+ IVQR A   GL++  E A E+A R+RGTPRIA RLLRRVRD+AEV  
Sbjct: 181 QRLEYYKVQDLQNIVQRSADCLGLSMEPEGALEVARRARGTPRIANRLLRRVRDYAEVKG 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
              I  ++AD AL  L +D  GFD +D + L  I   FGGGPVG++ ++A + E +D IE
Sbjct: 241 NGHICADVADKALNMLDVDAQGFDYMDRKLLLAIMEKFGGGPVGLDNMAAAIGEEKDTIE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           D++EPY+IQQG++QRTPRGR+    A+ H GI+
Sbjct: 301 DVLEPYLIQQGYLQRTPRGRIATDRAYLHFGIE 333


>gi|145590059|ref|YP_001156656.1| Holliday junction DNA helicase B [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|145048465|gb|ABP35092.1| Holliday junction DNA helicase RuvB [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 356

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 193/329 (58%), Positives = 243/329 (73%), Gaps = 1/329 (0%)

Query: 5   EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           + ++S      +A     LRP+ L+E+ GQ +A + L++FI A +AR EALDHVL  GPP
Sbjct: 20  DRIVSGAAGNTEAVFERALRPKQLDEYVGQTKARAQLEIFISATRARQEALDHVLLFGPP 79

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++ARELGVN R TSGPV+ + GDLAALLTNLE  DVLFIDEIHRLS +VEE
Sbjct: 80  GLGKTTLAHIIARELGVNLRQTSGPVLDRPGDLAALLTNLETNDVLFIDEIHRLSPVVEE 139

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILYPA+ED+ LD+M+GEGP+ARSVKI+L  FTLI ATTR G+LTNPL+DRFGI  RL FY
Sbjct: 140 ILYPALEDYSLDIMIGEGPAARSVKIDLKPFTLIGATTRAGMLTNPLRDRFGIVARLEFY 199

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
             E+L  I+ R A L   ++  E + EIA R+RGTPRIA RLLRRVRD+AEV    TIT+
Sbjct: 200 TTEELTKIITRSASLLKASIDPEGSIEIAKRARGTPRIANRLLRRVRDYAEVKGTGTITK 259

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
            +ADAAL  L +D  GFD +D + L  I   F GGPVGI+ ++A + E RD IED++EPY
Sbjct: 260 AMADAALKMLDVDPSGFDVMDRKLLEAILHKFDGGPVGIDNLAAAIGEERDTIEDVLEPY 319

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           +IQQG++QRT RGR+    A++H G+  P
Sbjct: 320 LIQQGYLQRTSRGRVATRQAYEHFGLTPP 348


>gi|237800219|ref|ZP_04588680.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331023076|gb|EGI03133.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 353

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 191/336 (56%), Positives = 250/336 (74%), Gaps = 2/336 (0%)

Query: 1   MMDREGLLSRN--VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M+D + L++      +++     +RP +L ++ GQ      +++FI+AA+ R+EALDH L
Sbjct: 1   MIDADRLITAAGGRDRDEQMDRAIRPLSLADYIGQPTVREQMELFIQAARGRSEALDHTL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA ++A+E+GV+ +STSGPV+ + GDLAA+LTNLE  DVLFIDEIHRLS
Sbjct: 61  IFGPPGLGKTTLANIIAQEMGVSIKSTSGPVLERPGDLAAILTNLEPNDVLFIDEIHRLS 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            IVEE+LYPAMEDFQLD+M+GEGP+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  
Sbjct: 121 PIVEEVLYPAMEDFQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQ 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           RL FY I DL TIV R A + GL +  + A EIA R+RGTPRIA RLLRRVRDFAEV   
Sbjct: 181 RLEFYNIADLSTIVSRSAGILGLVIEPQGAFEIARRARGTPRIANRLLRRVRDFAEVRGN 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             ITR+ AD AL  L +D+ GFD  D R L  +   F GGPVG+++++A +SE R  IED
Sbjct: 241 GQITRQTADKALNLLDVDEHGFDHQDRRLLLTMIEKFDGGPVGVDSLAAAISEERHTIED 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           ++EPY+IQQG+I RTPRGR++   A+ H G++IP R
Sbjct: 301 VLEPYLIQQGYIMRTPRGRVVTRHAYLHFGLNIPSR 336


>gi|319899377|ref|YP_004159474.1| Holliday junction DNA helicase RuvB [Bartonella clarridgeiae 73]
 gi|319403345|emb|CBI76904.1| Holliday junction DNA helicase RuvB [Bartonella clarridgeiae 73]
          Length = 364

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 229/332 (68%), Positives = 273/332 (82%), Gaps = 1/332 (0%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           D + LL       D D   LRP+TL++F GQ  A +NLK+FIEAA+ R EALDHVLFVGP
Sbjct: 5   DPQRLLGAIPLPNDPD-RSLRPQTLDDFIGQEAARANLKIFIEAARTRHEALDHVLFVGP 63

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTL+Q++A+ELGVNFRSTSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRL+  +E
Sbjct: 64  PGLGKTTLSQIMAKELGVNFRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLNPAIE 123

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILYPAMED+QLDL++GEGP+ARSVKI+L++FTL+AATTR+GLLT PL+DRFGIPIRLNF
Sbjct: 124 EILYPAMEDYQLDLIIGEGPAARSVKIDLAKFTLVAATTRLGLLTTPLRDRFGIPIRLNF 183

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y I++L+ IVQR A+L  + + D+ A EIA RSRGTPRI GRLLRRV DFA V  A+ I 
Sbjct: 184 YTIDELEHIVQRNARLFSVQINDDGAHEIARRSRGTPRIVGRLLRRVCDFALVKKAEKID 243

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           R +AD AL RL +D +G D LD RYL +IA+ F GGPVGIETI+A LSEPRDAIED+IEP
Sbjct: 244 RALADEALSRLEVDHLGLDSLDRRYLILIAQTFLGGPVGIETIAAALSEPRDAIEDIIEP 303

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           Y++QQGFIQRT RGR+L   AW HLG+  P +
Sbjct: 304 YLLQQGFIQRTARGRILTEKAWTHLGLCSPTK 335


>gi|154504991|ref|ZP_02041729.1| hypothetical protein RUMGNA_02501 [Ruminococcus gnavus ATCC 29149]
 gi|153794874|gb|EDN77294.1| hypothetical protein RUMGNA_02501 [Ruminococcus gnavus ATCC 29149]
          Length = 334

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 171/331 (51%), Positives = 244/331 (73%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M R  + + N+ ++    + LRP+ L ++ GQ +A   L+V+I AAK R EALDHVLF G
Sbjct: 1   MGRRIITTENLEEDAKIENHLRPQLLSDYIGQAKAKKMLEVYIRAAKERDEALDHVLFYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+GVN + TSGP I K G++AA+L NL++ DVLF+DEIHRL+  V
Sbjct: 61  PPGLGKTTLAGIIANEMGVNLKVTSGPAIEKPGEMAAILNNLQEHDVLFVDEIHRLNRQV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMED+ +D+M+G+G +ARS++++L +FTL+ ATTR G+LT PL+DRFG+  RL 
Sbjct: 121 EEVLYPAMEDYAIDIMIGKGATARSIRLDLPKFTLVGATTRAGMLTAPLRDRFGVVNRLE 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY  E+L TI++R A++  + +  + A E+A RSRGTPR+A RLL+RVRDFA+V +   I
Sbjct: 181 FYTEEELMTIIKRSARVLNVEIDTKGALELAKRSRGTPRLANRLLKRVRDFAQVKYDGVI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T E+A+ AL  L +D+ G D  D   L ++   F GGPVG++T++A +SE    +ED+ E
Sbjct: 241 TEEVANYALDLLDVDRYGLDHGDRMILQVMIEKFQGGPVGLDTLAASISEDSGTLEDVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           PY+++ GFIQRTPRGR++  +A++HLGI  P
Sbjct: 301 PYLLKCGFIQRTPRGRVVTDLAYRHLGILPP 331


>gi|15596164|ref|NP_249658.1| Holliday junction DNA helicase RuvB [Pseudomonas aeruginosa PAO1]
 gi|107100424|ref|ZP_01364342.1| hypothetical protein PaerPA_01001449 [Pseudomonas aeruginosa PACS2]
 gi|116048892|ref|YP_792307.1| Holliday junction DNA helicase RuvB [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218893062|ref|YP_002441931.1| Holliday junction DNA helicase RuvB [Pseudomonas aeruginosa LESB58]
 gi|254239315|ref|ZP_04932638.1| Holliday junction DNA helicase RuvB [Pseudomonas aeruginosa C3719]
 gi|254245250|ref|ZP_04938572.1| Holliday junction DNA helicase RuvB [Pseudomonas aeruginosa 2192]
 gi|296390674|ref|ZP_06880149.1| Holliday junction DNA helicase RuvB [Pseudomonas aeruginosa PAb1]
 gi|313105854|ref|ZP_07792117.1| Holliday junction DNA helicase RuvB [Pseudomonas aeruginosa 39016]
 gi|12231031|sp|Q51426|RUVB_PSEAE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|122257999|sp|Q02IC9|RUVB_PSEAB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|226725463|sp|B7UXW5|RUVB_PSEA8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|9946874|gb|AAG04356.1|AE004530_9 Holliday junction DNA helicase RuvB [Pseudomonas aeruginosa PAO1]
 gi|115584113|gb|ABJ10128.1| Holliday junction DNA helicase RuvB [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126171246|gb|EAZ56757.1| Holliday junction DNA helicase RuvB [Pseudomonas aeruginosa C3719]
 gi|126198628|gb|EAZ62691.1| Holliday junction DNA helicase RuvB [Pseudomonas aeruginosa 2192]
 gi|218773290|emb|CAW29102.1| Holliday junction DNA helicase RuvB [Pseudomonas aeruginosa LESB58]
 gi|310878619|gb|EFQ37213.1| Holliday junction DNA helicase RuvB [Pseudomonas aeruginosa 39016]
          Length = 352

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 196/336 (58%), Positives = 248/336 (73%), Gaps = 2/336 (0%)

Query: 1   MMDREGLLSRNVSQE--DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M++ + L+S    +E  +     +RP  L ++ GQ      +++FI AA+ R EALDH L
Sbjct: 1   MIEPDRLISAVSGRERDEQLDRAIRPLKLADYIGQPSVREQMELFIHAARGRQEALDHTL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA ++A+E+GV+ +STSGPV+ + GDLAALLTNLE  DVLF+DEIHRLS
Sbjct: 61  IFGPPGLGKTTLANIIAQEMGVSIKSTSGPVLERPGDLAALLTNLEAGDVLFVDEIHRLS 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            IVEE+LYPAMEDFQLD+M+GEGP+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  
Sbjct: 121 PIVEEVLYPAMEDFQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQ 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           RL FY +EDL TIV R A + GL +  + A EIA R+RGTPRIA RLLRRVRDFAEV   
Sbjct: 181 RLEFYNVEDLATIVSRSAGILGLEIEPQGAAEIAKRARGTPRIANRLLRRVRDFAEVRGQ 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             ITR IAD AL  L +D+ GFD LD R L  +   F GGPVGI+ ++A LSE R  IED
Sbjct: 241 GDITRVIADKALNLLDVDERGFDHLDRRLLLTMIDKFDGGPVGIDNLAAALSEERHTIED 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           ++EPY+IQQG+I RTPRGR++   A+ H G++IP R
Sbjct: 301 VLEPYLIQQGYIMRTPRGRVVTRHAYLHFGLNIPKR 336


>gi|330892241|gb|EGH24902.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 353

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 191/336 (56%), Positives = 249/336 (74%), Gaps = 2/336 (0%)

Query: 1   MMDREGLLSRN--VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M+D + L++      +++     +RP +L ++ GQ      +++FI+AA+ R+EALDH L
Sbjct: 1   MIDADRLITATGGRDRDEQMDRAIRPLSLADYIGQPTVREQMELFIQAARGRSEALDHTL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA ++A+E+GV+ +STSGPV+ + GDLAA+LTNLE  DVLFIDEIHRLS
Sbjct: 61  IFGPPGLGKTTLANIIAQEMGVSIKSTSGPVLERPGDLAAILTNLEPNDVLFIDEIHRLS 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            IVEE+LYPAMEDFQLD+M+GEGP+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  
Sbjct: 121 PIVEEVLYPAMEDFQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQ 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           RL FY I DL TIV R A + GL +  + A EIA R+RGTPRIA RLLRRV DFAEV   
Sbjct: 181 RLEFYNIADLSTIVSRSAGILGLVIEPQGAFEIARRARGTPRIANRLLRRVGDFAEVRGN 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             ITR+ AD AL  L +D+ GFD  D R L  +   F GGPVGI++++A +SE R  IED
Sbjct: 241 GQITRQTADKALNLLDVDEHGFDHQDRRLLLTMIEKFDGGPVGIDSLAAAISEERHTIED 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           ++EPY+IQQG+I RTPRGR++   A+ H G++IP R
Sbjct: 301 VLEPYLIQQGYIMRTPRGRVVTRHAYLHFGLNIPSR 336


>gi|301384819|ref|ZP_07233237.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv.
           tomato Max13]
 gi|302063527|ref|ZP_07255068.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv.
           tomato K40]
 gi|302130609|ref|ZP_07256599.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|44888474|sp|Q87Y35|RUVB_PSESM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
          Length = 353

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 190/336 (56%), Positives = 249/336 (74%), Gaps = 2/336 (0%)

Query: 1   MMDREGLLSR--NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M+D + L++      +++     +RP +L ++ GQ      +++FI+AA+ R+EALDH L
Sbjct: 1   MIDADRLITAVGGRDRDEQLDRAIRPLSLADYIGQPTVREQMELFIQAARGRSEALDHTL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA ++A+E+GV+ +STSGPV+ + GDLAA+LTNLE  DVLFIDEIHRLS
Sbjct: 61  IFGPPGLGKTTLANIIAQEMGVSIKSTSGPVLERPGDLAAILTNLEPNDVLFIDEIHRLS 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            IVEE+LYPAMEDFQLD+M+GEGP+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  
Sbjct: 121 PIVEEVLYPAMEDFQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQ 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           RL FY I DL TIV R A + GL +    A EIA R+RGTPRIA RLLRRVRDFA+V   
Sbjct: 181 RLEFYNIADLSTIVARSAGILGLVIEPAGAFEIARRARGTPRIANRLLRRVRDFAQVRGN 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             ITR+ AD AL  L +D+ GFD  D R L  +   F GGPVG+++++A +SE R  IED
Sbjct: 241 GQITRQTADKALNLLDVDEHGFDHQDRRLLLTMIEKFDGGPVGVDSLAAAISEERHTIED 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           ++EPY+IQQG+I RTPRGR++   A+ H G++IP R
Sbjct: 301 VLEPYLIQQGYIMRTPRGRVVTRHAYLHFGLNIPTR 336


>gi|304312896|ref|YP_003812494.1| Holliday junction resolvasome helicase subunit [gamma
           proteobacterium HdN1]
 gi|301798629|emb|CBL46861.1| Holliday junction resolvasome helicase subunit [gamma
           proteobacterium HdN1]
          Length = 339

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 186/330 (56%), Positives = 239/330 (72%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           E L+S +  +ED     +RP  L ++TGQV     +++FI AA+ R EALDH L  GPPG
Sbjct: 2   ERLISPHDKKEDGQDRAIRPTRLADYTGQVSVREQMEIFIAAARGRQEALDHTLIFGPPG 61

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLA ++A E+G + +STSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VEEI
Sbjct: 62  LGKTTLANIIANEMGSSLKSTSGPVLERAGDLAALLTNLERGDVLFIDEIHRLSPVVEEI 121

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPAMED+QLD+M+GEGP+ARS+KI+L  FTL+ ATTR GLLT+PL+DRFGI  RL FY 
Sbjct: 122 LYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLVGATTRAGLLTSPLRDRFGIVQRLEFYN 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +E+L +IV R A + G+ +    A EIA RSRGTPRIA RLLRRVRD+ +V    TI+++
Sbjct: 182 VEELTSIVSRAAGILGVPIHSGGAIEIARRSRGTPRIANRLLRRVRDYCQVKGDGTISQQ 241

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
            +  AL  L +D  GFD +D R L  I   F GGPVGI+++ A +SE    +ED++EPY+
Sbjct: 242 QSARALDLLKVDAFGFDTMDRRLLLAIIEKFDGGPVGIDSLGAAISEESGTLEDVVEPYL 301

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           IQQGF+ RT RGR+    A+ H G+  P R
Sbjct: 302 IQQGFLLRTARGRIATRQAYLHFGLPAPRR 331


>gi|163848629|ref|YP_001636673.1| Holliday junction DNA helicase RuvB [Chloroflexus aurantiacus
           J-10-fl]
 gi|222526564|ref|YP_002571035.1| Holliday junction DNA helicase RuvB [Chloroflexus sp. Y-400-fl]
 gi|189046024|sp|A9WHF8|RUVB_CHLAA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|254767419|sp|B9LBR4|RUVB_CHLSY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|163669918|gb|ABY36284.1| Holliday junction DNA helicase RuvB [Chloroflexus aurantiacus
           J-10-fl]
 gi|222450443|gb|ACM54709.1| Holliday junction DNA helicase RuvB [Chloroflexus sp. Y-400-fl]
          Length = 350

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 181/334 (54%), Positives = 239/334 (71%), Gaps = 1/334 (0%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M  E L++ +   +D  +   LRPRTL EF GQ +    L++ I AA+ R E+LDH LF 
Sbjct: 1   MSAERLVNPHSDSDDQQVEKSLRPRTLSEFIGQEKVVEQLRIAIAAARGRNESLDHTLFY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKT+LA VVA E+G   + TSGP I +AGDLAA+LTNL+  DVLFIDE+HRL+  
Sbjct: 61  GPPGLGKTSLANVVANEMGAKIKITSGPAIERAGDLAAILTNLQANDVLFIDEVHRLNRA 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDF LDL+VG+GP ARS+++NL RFT+I ATTR+ LLT+PL+DRF    RL
Sbjct: 121 VEEVLYPAMEDFALDLVVGKGPGARSLRLNLPRFTVIGATTRLALLTSPLRDRFVAVHRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  + +  IV R A++ G+ ++ E A EI  R+RGTPRIA R+LRRVRD+A+V     
Sbjct: 181 VFYSDDAMTEIVSRSARILGVPISPEGAREIGRRARGTPRIANRILRRVRDYAQVVADGA 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           IT ++A  AL +L ID++G D+ D R L  I   F GGPVG+ T++A L+E  DAIED+ 
Sbjct: 241 ITLQVARDALAQLEIDELGLDENDRRLLRAIIELFNGGPVGLSTLAAALAEEVDAIEDVY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           EP+++Q GF+QRTPRGR+    A++HLG+  P R
Sbjct: 301 EPFLLQLGFLQRTPRGRIATRRAYEHLGLPYPER 334


>gi|331016440|gb|EGH96496.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 353

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 191/336 (56%), Positives = 250/336 (74%), Gaps = 2/336 (0%)

Query: 1   MMDREGLLSR--NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M+D + L++      +++     +RP +L ++ GQ      +++FI+AA+ R+EALDH L
Sbjct: 1   MIDADRLITAVGGRDRDEQLDRAIRPLSLADYIGQPTVREQMELFIQAARGRSEALDHTL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA ++A+E+GV+ +STSGPV+ + GDLAA+LTNLE  DVLFIDEIHRLS
Sbjct: 61  IFGPPGLGKTTLANIIAQEMGVSIKSTSGPVLERPGDLAAILTNLEPNDVLFIDEIHRLS 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            IVEE+LYPAMEDFQLD+M+GEGP+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  
Sbjct: 121 PIVEEVLYPAMEDFQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQ 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           RL FY I DL TIV R A + GL +  E A EIA R+RGTPRIA RLLRRVRDFA+V   
Sbjct: 181 RLEFYNIADLSTIVARSAGILGLVIEPEGAFEIARRARGTPRIANRLLRRVRDFAQVRGN 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             ITR+ AD AL  L +D+ GFD  D R L  +   F GGPVG+++++A +SE R  IED
Sbjct: 241 GQITRQTADKALNLLDVDEHGFDHQDRRLLLTMIEKFDGGPVGVDSLAAAISEERHTIED 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           ++EPY+IQQG+I RTPRGR++   A+ H G++IP R
Sbjct: 301 VLEPYLIQQGYIMRTPRGRVVTRHAYLHFGLNIPTR 336


>gi|163814139|ref|ZP_02205531.1| hypothetical protein COPEUT_00293 [Coprococcus eutactus ATCC 27759]
 gi|158450588|gb|EDP27583.1| hypothetical protein COPEUT_00293 [Coprococcus eutactus ATCC 27759]
          Length = 333

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 174/327 (53%), Positives = 235/327 (71%), Gaps = 2/327 (0%)

Query: 6   GLLSRNV--SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
            ++S      +E+     LRP+ L E+ GQ +   NL++FIEAAK R E LDH+L  GPP
Sbjct: 3   RIISTEALDKEEEKSEYSLRPQYLNEYIGQEKVKDNLRIFIEAAKKRKEPLDHLLLYGPP 62

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTL+ +VA E+GVN + TSGP I K G+LAA+L NL D D+LFIDEIHRLS  VEE
Sbjct: 63  GLGKTTLSTIVANEMGVNIKITSGPAIEKPGELAAILNNLSDNDILFIDEIHRLSTQVEE 122

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LYPAMED+ +D+++G+G  ARS++++L +FTLI ATTRVG+L+ PL+DRFG+  +L FY
Sbjct: 123 VLYPAMEDYAIDVVIGKGAGARSIRLDLPKFTLIGATTRVGMLSAPLRDRFGMVDKLEFY 182

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
             EDLK I+ R A + G+++ DE A EIA RSRGTPR+A RLL+R RD+AEV H   I+R
Sbjct: 183 SNEDLKEIIVRSADVLGVSLDDEGALEIARRSRGTPRLANRLLKRCRDYAEVCHDGCISR 242

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           ++A +AL +L +D MG D  D   L  +   F GGPVG++T++A + E    IED+ EPY
Sbjct: 243 DVAKSALDKLQVDSMGLDVNDRNILLTMIEKFDGGPVGLDTLAAAVGEDPGTIEDVYEPY 302

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGID 330
            I  GFI RTPRGR++  + ++HLG+D
Sbjct: 303 FIMNGFINRTPRGRVVTELCYRHLGLD 329


>gi|16272266|ref|NP_438478.1| Holliday junction DNA helicase RuvB [Haemophilus influenzae Rd
           KW20]
 gi|260581220|ref|ZP_05849039.1| Holliday junction DNA helicase RuvB [Haemophilus influenzae RdAW]
 gi|1173331|sp|P44631|RUVB_HAEIN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|1573279|gb|AAC21975.1| Holliday junction DNA helicase (ruvB) [Haemophilus influenzae Rd
           KW20]
 gi|260092145|gb|EEW76089.1| Holliday junction DNA helicase RuvB [Haemophilus influenzae RdAW]
          Length = 335

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 183/331 (55%), Positives = 242/331 (73%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + ++S      ED     +RP+ L ++ GQ +    + +FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRIISGQAKVDEDVIDRAIRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            +EE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ ATTR G LT+PL+DRFGI  R
Sbjct: 121 AIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY +EDL +IV R A    L +  +AA E+A RSRGTPRIA RLLRRVRD+A+V +  
Sbjct: 181 LEFYSVEDLTSIVARSAGCLNLELEQQAAFEVARRSRGTPRIANRLLRRVRDYADVRNGG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I+  +A  AL  L +D  GFD LD + L+ +   F GGPVG++ ++A + E RD IED+
Sbjct: 241 IISINVAKQALSMLDVDDAGFDYLDRKLLSAVIERFDGGPVGLDNLAAAIGEERDTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           +EPY+IQQGF+QRTPRGR+     ++H G+ 
Sbjct: 301 LEPYLIQQGFLQRTPRGRIATSQTYRHFGLQ 331


>gi|291530841|emb|CBK96426.1| Holliday junction DNA helicase, RuvB subunit [Eubacterium siraeum
           70/3]
          Length = 350

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 187/325 (57%), Positives = 238/325 (73%), Gaps = 1/325 (0%)

Query: 6   GLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
            ++    S ED D+   LRPR L E+ GQ +   NL+V+I+AAK R E+LDHVL  GPPG
Sbjct: 17  RIVEPQFSAEDTDVEFSLRPRKLNEYIGQEKVKENLQVYIQAAKKRNESLDHVLLYGPPG 76

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLA ++A E+GVNF+ TSGP I K G+LAALLT L+  DVLF+DEIHRLS  VEEI
Sbjct: 77  LGKTTLAGIIANEMGVNFKVTSGPAIEKPGELAALLTGLQAGDVLFVDEIHRLSRQVEEI 136

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPA+ED  LD+M+G+GPSA+S++++L+RFTLI ATTR G LT PL+DRFG+ +RL  Y 
Sbjct: 137 LYPALEDCVLDIMIGKGPSAQSIRVDLNRFTLIGATTRAGQLTGPLRDRFGVIMRLEMYT 196

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            E+L  IV R + +  +      A EIA RSRGTPRIA RLL+RVRDFAEV     IT+E
Sbjct: 197 PEELCDIVMRSSVILSIPCDRSGAMEIAKRSRGTPRIANRLLKRVRDFAEVMGNGKITKE 256

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +AD AL RL IDK+G D LD R+LTMI   + GGPVG+ET+++ L E    +ED+ EPY+
Sbjct: 257 MADIALNRLEIDKLGLDSLDKRFLTMIINGYNGGPVGLETLASALGEESVTLEDVCEPYL 316

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGI 329
           +Q GFI RTPRGR    +A++HLG+
Sbjct: 317 MQLGFISRTPRGRCATELAYKHLGL 341


>gi|153832507|ref|ZP_01985174.1| holliday junction DNA helicase RuvB [Vibrio harveyi HY01]
 gi|156973891|ref|YP_001444798.1| Holliday junction DNA helicase B [Vibrio harveyi ATCC BAA-1116]
 gi|166231569|sp|A7N1I0|RUVB_VIBHB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|148871302|gb|EDL70174.1| holliday junction DNA helicase RuvB [Vibrio harveyi HY01]
 gi|156525485|gb|ABU70571.1| hypothetical protein VIBHAR_01601 [Vibrio harveyi ATCC BAA-1116]
          Length = 334

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 188/333 (56%), Positives = 247/333 (74%), Gaps = 3/333 (0%)

Query: 1   MMDREGLLSRNVS---QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M++ + L++       +ED     +RP+ L ++ GQ      +++FI+AA+ R EALDH+
Sbjct: 1   MIEADRLIAPENPSFREEDVIDRAIRPKKLADYQGQDHVRDQMEIFIKAAQLRNEALDHL 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTLA +VA E+ VN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRL
Sbjct: 61  LIFGPPGLGKTTLANIVANEMEVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           S +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI 
Sbjct: 121 SPMVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIT 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            RL +Y+++DL+ IVQR A   GL++  E A E+A R+RGTPRIA RLLRRVRD+AEV  
Sbjct: 181 QRLEYYKVKDLQDIVQRSADCLGLSMESEGALEVARRARGTPRIANRLLRRVRDYAEVKG 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
              I  + AD AL  L +D  GFD +D + L  I   FGGGPVG++ ++A + E +D IE
Sbjct: 241 NGHICADTADKALNMLDVDAEGFDYMDRKLLLAIMEKFGGGPVGLDNMAAAIGEEKDTIE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           D++EPY+IQQG++QRTPRGR+    A+ H GI+
Sbjct: 301 DVLEPYLIQQGYLQRTPRGRIATDRAYLHFGIE 333


>gi|238792584|ref|ZP_04636217.1| Holliday junction DNA helicase RuvB [Yersinia intermedia ATCC
           29909]
 gi|238728219|gb|EEQ19740.1| Holliday junction DNA helicase RuvB [Yersinia intermedia ATCC
           29909]
          Length = 334

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 191/331 (57%), Positives = 246/331 (74%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S  + S E++    +RP+ L E+ GQ      +++FI+AAK R +ALDHVL 
Sbjct: 1   MIEADRLISAGIISDEESIDRAIRPKLLAEYVGQPHVREQMEIFIQAAKQRGDALDHVLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IV R A+  GL +T E A ++A RSRGTPRI  RLLRRVRDFAEV    
Sbjct: 181 LEFYQVADLEHIVARSARCMGLELTPEGAHQLARRSRGTPRITNRLLRRVRDFAEVRADG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  ++A  AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 AINGDVAMKALDMLNVDAEGFDFMDRKLLLAVIDKFMGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           +EPY+IQQGFIQRTPRGR+    A++H GI 
Sbjct: 301 LEPYLIQQGFIQRTPRGRIATNHAYKHFGIT 331


>gi|167470861|ref|ZP_02335565.1| Holliday junction DNA helicase RuvB [Yersinia pestis FV-1]
          Length = 329

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 191/328 (58%), Positives = 245/328 (74%), Gaps = 1/328 (0%)

Query: 1   MMDREGLLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S  V + E++    +RP+ L E+ GQ      +++FI+AAK R +ALDHVL 
Sbjct: 1   MIEADRLISAAVINDEESIDRAIRPKLLTEYVGQPHVREQMEIFIQAAKQRGDALDHVLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIIANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IV R AK  GL +T E A ++A RSRGTPRI  RLLRRVRDFAEV    
Sbjct: 181 LEFYQVADLEHIVSRSAKCLGLELTPEGAHQLARRSRGTPRITNRLLRRVRDFAEVRADG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  E+A  AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 AINGEVAMKALDMLNVDAEGFDFMDRKLLLAVIDKFMGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHL 327
           +EPY+IQQGFIQRTPRGR+    A++HL
Sbjct: 301 LEPYLIQQGFIQRTPRGRIATNHAYKHL 328


>gi|319786207|ref|YP_004145682.1| Holliday junction DNA helicase RuvB [Pseudoxanthomonas suwonensis
           11-1]
 gi|317464719|gb|ADV26451.1| Holliday junction DNA helicase RuvB [Pseudoxanthomonas suwonensis
           11-1]
          Length = 341

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 195/335 (58%), Positives = 249/335 (74%), Gaps = 1/335 (0%)

Query: 1   MMDREGLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M +   +L    ++ED A  + +RP+ L+E+ GQ      L ++IEAA+AR EALDHVL 
Sbjct: 1   MSEHRSILGAGATREDEALEASIRPQRLDEYLGQQPVREQLGIYIEAARARGEALDHVLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTL+ V+A ELGVN R TSGPVI KAGDLAALLTNL+  DVLFIDEIHR+S 
Sbjct: 61  FGPPGLGKTTLSHVIANELGVNLRVTSGPVIEKAGDLAALLTNLQPHDVLFIDEIHRMSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMEDFQ+D+M+GEGP+ARS+K++L  FTLI ATTR GLLT PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDFQIDIMIGEGPAARSIKLDLPPFTLIGATTRAGLLTAPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY  E+L  IV+R A++ G+    + A EIA R+RGTPRIA RLLRRVRD+A+V    
Sbjct: 181 LEFYTPEELTKIVRRSARILGIDCEADGAGEIARRARGTPRIANRLLRRVRDYAQVRAGG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  ++A AA+  L +D  GFD+LD R L  I  +F GGPVG+E+++A LSE R  +ED+
Sbjct: 241 RIDMDVAQAAMAMLKVDPEGFDELDRRLLNTIIGHFDGGPVGVESLAASLSEERGTLEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           IEPY+IQQGF+ RT RGR+    A++HLG+ +P R
Sbjct: 301 IEPYLIQQGFLVRTARGRMATSKAYRHLGLAVPTR 335


>gi|148656547|ref|YP_001276752.1| Holliday junction DNA helicase RuvB [Roseiflexus sp. RS-1]
 gi|166231550|sp|A5UVZ9|RUVB_ROSS1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|148568657|gb|ABQ90802.1| Holliday junction DNA helicase RuvB [Roseiflexus sp. RS-1]
          Length = 347

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 185/334 (55%), Positives = 235/334 (70%), Gaps = 1/334 (0%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M RE +++    +ED  I   LRPR L EF GQ +    L++ I AAK R E LDH L  
Sbjct: 1   MSRERVVTPKAGEEDQQIEKSLRPRRLAEFIGQEKVVEQLRIAIMAAKGRGEPLDHTLLY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKT+LA V+A E+GVN + TSGP I +AGDLAALLTNL+  D+LFIDEIHRL+  
Sbjct: 61  GPPGLGKTSLAGVLAAEMGVNIKLTSGPAIERAGDLAALLTNLQKDDILFIDEIHRLNRA 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EE+LYPAMEDF LD+MVG+GP ARS+++ L RFT+I ATTR+ LLT+PL+DRFG   RL
Sbjct: 121 IEEVLYPAMEDFALDIMVGKGPGARSLRLKLPRFTVIGATTRLALLTSPLRDRFGSVHRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY ++ L  IV R A++ G+  T E A EIA R+RGTPRI  RLLRRVRD+A+V     
Sbjct: 181 EFYSVDALYQIVMRSARILGVDCTPEGAHEIAARARGTPRIVNRLLRRVRDYAQVVGNGV 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           IT E A  AL +L +D +G D  D R L  I   F GGPVG+ T++A L+E  DAIED+ 
Sbjct: 241 ITLETARDALAKLEVDHLGLDDNDRRLLRAIIELFNGGPVGLSTLAASLAEEVDAIEDVY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           EP+++Q GF+QRTPRGR+    A++HLG+    R
Sbjct: 301 EPFLLQLGFLQRTPRGRIATRRAYEHLGVPYVER 334


>gi|260779156|ref|ZP_05888048.1| holliday junction DNA helicase RuvB [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260605320|gb|EEX31615.1| holliday junction DNA helicase RuvB [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 334

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 191/333 (57%), Positives = 248/333 (74%), Gaps = 3/333 (0%)

Query: 1   MMDREGLLSRNVS---QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M++ + L++   +   +ED     +RP+ L ++ GQ      +++FI+AA  R EALDH+
Sbjct: 1   MIEADRLIAPENAVYKEEDVIDRAIRPKKLADYQGQDHVRDQMEIFIKAANLREEALDHL 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRL
Sbjct: 61  LIFGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           S +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI 
Sbjct: 121 SPMVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIT 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            RL +Y+I DL+ IVQR A   GL++  E A E+A R+RGTPRIA RLLRRVRD+AEV  
Sbjct: 181 QRLEYYKIPDLQHIVQRSADCLGLSMESEGALEVARRARGTPRIANRLLRRVRDYAEVKG 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
              I  +IAD AL  L +D  GFD +D + L  I   FGGGPVG++ ++A + E +D IE
Sbjct: 241 NGHICADIADKALNMLDVDAQGFDYMDRKLLLAIMEKFGGGPVGLDNMAAAIGEEKDTIE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           D++EPY+IQQG++QRTPRGR+    A+ H GI+
Sbjct: 301 DVLEPYLIQQGYLQRTPRGRIATDRAYLHFGIE 333


>gi|328473202|gb|EGF44050.1| Holliday junction DNA helicase RuvB [Vibrio parahaemolyticus 10329]
          Length = 334

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 188/333 (56%), Positives = 247/333 (74%), Gaps = 3/333 (0%)

Query: 1   MMDREGLLSRNVS---QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M++ + L++        ED     +RP+ L ++ GQ      +++FI+AA+ R+EALDH+
Sbjct: 1   MIEADRLIAPENPAFRDEDVIDRAIRPKKLADYQGQDHVRDQMEIFIKAAQLRSEALDHL 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTLA +VA E+ VN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRL
Sbjct: 61  LIFGPPGLGKTTLANIVANEMEVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           S +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI 
Sbjct: 121 SPMVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIT 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            RL +Y++ DL+ IVQR A   GL++  E A E+A R+RGTPRIA RLLRRVRD+AEV  
Sbjct: 181 QRLEYYKVHDLQNIVQRSADCLGLSMEPEGALEVARRARGTPRIANRLLRRVRDYAEVKG 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
              I  ++AD AL  L +D  GFD +D + L  I   FGGGPVG++ ++A + E +D IE
Sbjct: 241 NGHICADVADKALNMLDVDAQGFDYMDRKLLLAIMEKFGGGPVGLDNMAAAIGEEKDTIE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           D++EPY+IQQG++QRTPRGR+    A+ H GI+
Sbjct: 301 DVLEPYLIQQGYLQRTPRGRIATDRAYLHFGIE 333


>gi|284007613|emb|CBA73225.1| Holliday junction ATP-dependent DNA helicase [Arsenophonus
           nasoniae]
          Length = 338

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 196/334 (58%), Positives = 249/334 (74%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSR-NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S  N+  E+     +RP+ L E+ GQ + C  +++FI+AAK RAEALDH+L 
Sbjct: 1   MIEADRLVSAENLPDEEVIDRAIRPKLLTEYVGQPQVCQQMEIFIQAAKLRAEALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA ELG N R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLAGIVANELGSNLRTTSGPVLEKAGDLAAMLTNLEPNDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPAMED+QLD+M+GEGP+ARS+KI+L  FTL+ ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLVGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY ++DL+TIV R A   GL ++D  A +IAMRSRGTPRI  RLLRRVRDFA+V    
Sbjct: 181 LEFYNVDDLQTIVLRSAGFMGLEISDAGARQIAMRSRGTPRITNRLLRRVRDFAQVKGNG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I   IA  AL  L +D  GFD LD + L  I   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 IIDGTIAAQALDMLNVDTAGFDYLDRKLLIAIIDKFMGGPVGLDNVAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +EP++IQQGFIQRTPRGR+    A++H G++  H
Sbjct: 301 LEPFLIQQGFIQRTPRGRIATDHAYRHFGLNKDH 334


>gi|110833614|ref|YP_692473.1| Holliday junction DNA helicase RuvB [Alcanivorax borkumensis SK2]
 gi|122959608|sp|Q0VRJ7|RUVB_ALCBS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|110646725|emb|CAL16201.1| Holliday junction DNA helicase RuvB [Alcanivorax borkumensis SK2]
          Length = 342

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 187/335 (55%), Positives = 243/335 (72%), Gaps = 2/335 (0%)

Query: 2   MDREGLLSRNV--SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           MD E +++     SQE+     +RP +L ++ GQ +    +++FI+AA+ R EALDH L 
Sbjct: 1   MDNERVITAVAVGSQEEQQDRAIRPASLADYHGQPKVSERMEIFIDAARGRNEALDHTLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++ARE+G + +STSGPV+ KAGDLAA+LTNLE+ DVLF+DEIHRLS 
Sbjct: 61  FGPPGLGKTTLAHIIAREMGCDLKSTSGPVLEKAGDLAAILTNLEEGDVLFVDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ ATTR GLLT PL+DRFGI  R
Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGLLTAPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY ++DL  IV R   +  + +    A E+A R+RGTPRIA RLLRRVRD+AEV    
Sbjct: 181 LEFYSVDDLSGIVSRACDILAIPIEAAGAMEVARRARGTPRIANRLLRRVRDYAEVKGDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT EIA  AL  L +D  G D  D R L MI   F GGPVG+E+++A L+E    +E++
Sbjct: 241 RITEEIAQRALDMLEVDSCGLDGTDRRLLDMIMHKFDGGPVGLESLAAALNEDSGTLEEV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           +EPY+IQQGFIQRTPRGR +   AW+H G+  P +
Sbjct: 301 VEPYLIQQGFIQRTPRGRAVTNHAWRHFGLQRPRQ 335


>gi|209886411|ref|YP_002290268.1| holliday junction DNA helicase RuvB [Oligotropha carboxidovorans
           OM5]
 gi|209874607|gb|ACI94403.1| holliday junction DNA helicase RuvB [Oligotropha carboxidovorans
           OM5]
          Length = 346

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 225/333 (67%), Positives = 273/333 (81%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M    L++     +D   + LRP+ L EF GQ +A +NL VFIEAA+ R EALDHVLFVG
Sbjct: 1   MTDSRLVTSERRADDIGDASLRPQNLSEFVGQAQARANLSVFIEAARKRNEALDHVLFVG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLAQ+V+RELGV FR+TSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRLS  V
Sbjct: 61  PPGLGKTTLAQIVSRELGVGFRATSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSPAV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMEDFQLDL++GEGP+ARSVKI+L++FTL+ ATTR GLLTNPL+DRFGIP+RLN
Sbjct: 121 EEVLYPAMEDFQLDLIIGEGPAARSVKIDLAKFTLVGATTRAGLLTNPLRDRFGIPLRLN 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY  ++L+ IV RGA++ G+ +T + A EIA R+RGTPRIAGRLLRRVRDFA    A+ I
Sbjct: 181 FYTEDELEKIVTRGARVLGVGMTADGANEIARRARGTPRIAGRLLRRVRDFASALDAEAI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
            R++AD AL  L +DK G D +D RYL+ IA N+GGGPVG+ET++A LSEPRDAIED+IE
Sbjct: 241 DRKVADHALGALEVDKAGLDAMDRRYLSTIALNYGGGPVGVETLAAALSEPRDAIEDIIE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           PY+IQ G++QRTPRGRLL   A++HLG+  P R
Sbjct: 301 PYLIQCGYLQRTPRGRLLTSHAFKHLGLAEPSR 333


>gi|152988470|ref|YP_001349890.1| Holliday junction DNA helicase RuvB [Pseudomonas aeruginosa PA7]
 gi|166231539|sp|A6VA05|RUVB_PSEA7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|150963628|gb|ABR85653.1| holliday junction DNA helicase RuvB [Pseudomonas aeruginosa PA7]
          Length = 352

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 196/336 (58%), Positives = 248/336 (73%), Gaps = 2/336 (0%)

Query: 1   MMDREGLLSR--NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M++ + L+S      +E+     +RP  L ++ GQ      +++FI AA+ R EALDH L
Sbjct: 1   MIEPDRLISAVSGREREEQLDRAIRPLKLADYIGQPSVREQMELFIHAARGRQEALDHTL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA ++A+E+GV+ +STSGPV+ + GDLAALLTNLE  DVLF+DEIHRLS
Sbjct: 61  IFGPPGLGKTTLANIIAQEMGVSIKSTSGPVLERPGDLAALLTNLEAGDVLFVDEIHRLS 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            IVEE+LYPAMEDFQLD+M+GEGP+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  
Sbjct: 121 PIVEEVLYPAMEDFQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQ 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           RL FY +EDL TIV R A + GL +  + A EIA R+RGTPRIA RLLRRVRDFAEV   
Sbjct: 181 RLEFYNVEDLATIVSRSAGILGLQIETQGAAEIAKRARGTPRIANRLLRRVRDFAEVRGQ 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             ITR IAD AL  L +D+ GFD LD R L  +   F GGPVGI+ ++A LSE R  IED
Sbjct: 241 GDITRVIADKALNLLDVDERGFDHLDRRLLLTMIDKFDGGPVGIDNLAAALSEERHTIED 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           ++EPY+IQQG+I RTPRGR++   A+ H G++IP R
Sbjct: 301 VLEPYLIQQGYIMRTPRGRVVTRHAYLHFGLNIPKR 336


>gi|225025939|ref|ZP_03715131.1| hypothetical protein EUBHAL_00175 [Eubacterium hallii DSM 3353]
 gi|224956725|gb|EEG37934.1| hypothetical protein EUBHAL_00175 [Eubacterium hallii DSM 3353]
          Length = 334

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 172/330 (52%), Positives = 232/330 (70%), Gaps = 1/330 (0%)

Query: 5   EGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           + ++S  + +ED  +   LRP+ L E+ GQ +   NL+VFIEAAK R E+LDHVL  GPP
Sbjct: 2   DRMISTELMEEDIAVEGSLRPQNLSEYIGQEKVKKNLRVFIEAAKMRGESLDHVLLYGPP 61

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++A E+  N + TSGP I K G++AA+L  L D DVLFIDEIHRL+  VEE
Sbjct: 62  GLGKTTLAGIIANEMDSNLKITSGPAIEKPGEIAAVLNGLSDGDVLFIDEIHRLNRQVEE 121

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LYPAMEDF +D+M+G+G SA+S+++ L  FTL+ ATTR G+LT PL+DRFG+  RL FY
Sbjct: 122 VLYPAMEDFSIDIMIGKGASAKSIRLELPHFTLVGATTRAGMLTAPLRDRFGVVNRLEFY 181

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
             E+LK IV+R A+L G+ + +  A E+  RSRGTPR+A RLL+RVRDFA+V +   IT 
Sbjct: 182 TDEELKVIVERSAELLGVKIDEAGAMEVGKRSRGTPRLANRLLKRVRDFAQVRYDGMITY 241

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           E+A  AL  L +D MG D  D   L  +   F G PVG++T++A + E    IED+ EP+
Sbjct: 242 EVAQTALNLLEVDSMGLDATDRNLLEAMITKFMGKPVGLDTLAAAIGEDSGTIEDVYEPF 301

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +IQ+G I+RTPRGR L   A++H+G  +P 
Sbjct: 302 LIQRGLIKRTPRGRALTAFAYEHMGYPVPE 331


>gi|226329885|ref|ZP_03805403.1| hypothetical protein PROPEN_03798 [Proteus penneri ATCC 35198]
 gi|225200680|gb|EEG83034.1| hypothetical protein PROPEN_03798 [Proteus penneri ATCC 35198]
          Length = 336

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 193/330 (58%), Positives = 246/330 (74%), Gaps = 2/330 (0%)

Query: 1   MMDREGLLSRNVSQ--EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M++ + L+S  + Q  E+     +RP++L E+ GQ +    +++FI+AAK R +ALDH+L
Sbjct: 1   MIEADRLISAEIQQPEEEIIDRAIRPKSLAEYVGQPQVREQMEIFIQAAKLRHDALDHLL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA ++A E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS
Sbjct: 61  IFGPPGLGKTTLANIIANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLS 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            +VEEILYPAMED+QLD+M+GEGP+ARS+KI+L  FTL+ ATTR G LT+PL+DRFGI  
Sbjct: 121 PVVEEILYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLVGATTRAGSLTSPLRDRFGIVQ 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           RL FY ++DL+ IV R A   GL +TDE A +IAMRSRGTPRI  RLLRRVRDFA+V   
Sbjct: 181 RLEFYHVDDLQHIVSRSASFMGLEMTDEGARQIAMRSRGTPRITNRLLRRVRDFAQVKGN 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             I  EIA  AL  L +D  GFD LD + L  I   F GGPVG++ ++A + E R+ IED
Sbjct: 241 GAIDEEIASKALDMLNVDAAGFDYLDRKLLFAIIDKFMGGPVGLDNLAAAIGEERETIED 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
           ++EPY+IQQGFIQRTPRGR+    A++H  
Sbjct: 301 VLEPYLIQQGFIQRTPRGRVATNHAYRHFN 330


>gi|149185529|ref|ZP_01863845.1| Holliday junction resolvasome helicase subunit [Erythrobacter sp.
           SD-21]
 gi|148830749|gb|EDL49184.1| Holliday junction resolvasome helicase subunit [Erythrobacter sp.
           SD-21]
          Length = 347

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 211/327 (64%), Positives = 255/327 (77%), Gaps = 1/327 (0%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L S +   ED D + LRP++L EF GQ  A  NL+VFIEAAK R EA+DHVLF GPPGLG
Sbjct: 8   LHSPDRQPEDPD-AALRPKSLAEFVGQKAARENLRVFIEAAKNRGEAMDHVLFFGPPGLG 66

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTTLAQ+V++ELGV FR+TSGPVIAKAGDLAALLTNLE  DVLFIDEIHRL+ +VEE+LY
Sbjct: 67  KTTLAQIVSKELGVGFRATSGPVIAKAGDLAALLTNLEPNDVLFIDEIHRLNPVVEEVLY 126

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           PAMED  LD+++GEGPSARSV+I+L  FTL+ ATTR GLLT PL+DRFGIP+RLNFY  +
Sbjct: 127 PAMEDRALDIIIGEGPSARSVRIDLPPFTLVGATTRQGLLTTPLRDRFGIPVRLNFYTED 186

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +L  +V RGA L G+ + +  A EIA RSRGTPR+AGRL+RRVRDFA V     +T  +A
Sbjct: 187 ELLKVVTRGAGLLGMGIDEGGAREIARRSRGTPRVAGRLMRRVRDFASVLGEPVVTTRVA 246

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           D AL RL +D +G D +D RYLTMIA  + GGPVG+ET++AGLSEPRD +E++IEPY+IQ
Sbjct: 247 DEALTRLEVDSLGLDAMDRRYLTMIATTYKGGPVGVETLAAGLSEPRDTVEEVIEPYLIQ 306

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            G I RT RGR+L    W HLG+  P 
Sbjct: 307 LGLIARTARGRMLNDGGWNHLGMRPPQ 333


>gi|71736556|ref|YP_275912.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|97190209|sp|Q48FC5|RUVB_PSE14 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|71557109|gb|AAZ36320.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320323051|gb|EFW79140.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320329677|gb|EFW85666.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330877978|gb|EGH12127.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 353

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 191/336 (56%), Positives = 249/336 (74%), Gaps = 2/336 (0%)

Query: 1   MMDREGLLSRN--VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M+D + L++      +++     +RP +L ++ GQ      +++FI+AA+ R EALDH L
Sbjct: 1   MIDADRLITAAGGRDRDEQMDRAIRPLSLADYIGQPTVREQMELFIQAARGRNEALDHTL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA ++A+E+GV+ +STSGPV+ + GDLAA+LTNLE  DVLFIDEIHRLS
Sbjct: 61  IFGPPGLGKTTLANIIAQEMGVSIKSTSGPVLERPGDLAAILTNLEPNDVLFIDEIHRLS 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            IVEE+LYPAMEDFQLD+M+GEGP+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  
Sbjct: 121 PIVEEVLYPAMEDFQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQ 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           RL FY I DL TIV R A + GL +  + A EIA R+RGTPRIA RLLRRVRDFAEV   
Sbjct: 181 RLEFYNIADLSTIVSRSAGILGLVIEPQGAFEIARRARGTPRIANRLLRRVRDFAEVRGN 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             ITR+ AD AL  L +D+ GFD  D R L  +   F GGPVG+++++A +SE R  IED
Sbjct: 241 GQITRQTADKALNLLDVDEHGFDHQDRRLLLTMIEKFDGGPVGVDSLAAAISEERHTIED 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           ++EPY+IQQG+I RTPRGR++   A+ H G++IP R
Sbjct: 301 VLEPYLIQQGYIMRTPRGRVVTRHAYLHFGLNIPSR 336


>gi|311104196|ref|YP_003977049.1| holliday junction DNA helicase RuvB [Achromobacter xylosoxidans A8]
 gi|310758885|gb|ADP14334.1| holliday junction DNA helicase RuvB [Achromobacter xylosoxidans A8]
          Length = 357

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 190/332 (57%), Positives = 237/332 (71%), Gaps = 2/332 (0%)

Query: 3   DREGLLSRNV--SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           D   +++       E++    LRP+ L+E+ GQ  A   L++FI AAK R EALDHVL  
Sbjct: 13  DAPRIVAPQPVSPNEESIERALRPKALQEYVGQHRAREQLEIFIAAAKKRGEALDHVLLF 72

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A E+GV  R TSGPV+ + GDLAALLTNLE  DVLFIDEIHRLS +
Sbjct: 73  GPPGLGKTTLAHIIAHEMGVQLRQTSGPVLERPGDLAALLTNLEKNDVLFIDEIHRLSPV 132

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILYPA+EDFQ+D+++GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL
Sbjct: 133 VEEILYPALEDFQIDILIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVSRL 192

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY   DL  IV R A L   A+T E A E+A R+RGTPRIA RLLRRVRD+AEV    T
Sbjct: 193 EFYNAADLGHIVTRSAGLLNAAITPEGAAEVARRARGTPRIANRLLRRVRDYAEVKAGGT 252

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I  E+A  AL  L +D  G D +D + L  I   F GGPVG+++++A + E RD IED+I
Sbjct: 253 IDAEVAGRALAMLEVDPQGLDLMDRKLLEAIIHKFDGGPVGVDSLAAAIGEERDTIEDVI 312

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EPY+IQ G++QRTPRGR      W+HLG+  P
Sbjct: 313 EPYLIQHGYLQRTPRGRTATLTTWRHLGLTPP 344


>gi|330872652|gb|EGH06801.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330964825|gb|EGH65085.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 353

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 191/336 (56%), Positives = 249/336 (74%), Gaps = 2/336 (0%)

Query: 1   MMDREGLLSR--NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M+D + L++      +++     +RP +L ++ GQ      +++FI+AA+ R EALDH L
Sbjct: 1   MIDADRLITAVGGRDRDEQLDRAIRPLSLADYIGQPTVREQMELFIQAARGRNEALDHTL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA ++A+E+GV+ +STSGPV+ + GDLAA+LTNLE  DVLFIDEIHRLS
Sbjct: 61  IFGPPGLGKTTLANIIAQEMGVSIKSTSGPVLERPGDLAAILTNLEPNDVLFIDEIHRLS 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            IVEE+LYPAMEDFQLD+M+GEGP+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  
Sbjct: 121 PIVEEVLYPAMEDFQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQ 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           RL FY I DL TIV R A + GL +  E A EIA R+RGTPRIA RLLRRVRDFA+V   
Sbjct: 181 RLEFYNIADLSTIVARSAGILGLVIEPEGAFEIARRARGTPRIANRLLRRVRDFAQVRGN 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             ITR+ AD AL  L +D+ GFD  D R L  +   F GGPVG+++++A +SE R  IED
Sbjct: 241 GQITRQTADKALNLLDVDEHGFDHQDRRLLLTMIEKFDGGPVGVDSLAAAISEERHTIED 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           ++EPY+IQQG+I RTPRGR++   A+ H G++IP R
Sbjct: 301 VLEPYLIQQGYIMRTPRGRVVTRHAYLHFGLNIPAR 336


>gi|163869136|ref|YP_001610375.1| Holliday junction DNA helicase RuvB [Bartonella tribocorum CIP
           105476]
 gi|189045781|sp|A9IYK5|RUVB_BART1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|161018822|emb|CAK02380.1| Holliday junction DNA helicase RuvB [Bartonella tribocorum CIP
           105476]
          Length = 363

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 230/330 (69%), Positives = 273/330 (82%), Gaps = 1/330 (0%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           + + LL       D D   LRP+ L++F GQ  A +NLK+FIEAAK R EALDHVLFVGP
Sbjct: 5   EDQRLLGPAPLPNDPD-RSLRPQVLDDFIGQEAARANLKIFIEAAKTRQEALDHVLFVGP 63

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTL+Q++A+ELGVNFRSTSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRL+  +E
Sbjct: 64  PGLGKTTLSQIMAKELGVNFRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLNPAIE 123

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILYPAMED+QLDL++GEGP+ARSVKI+L++FTL+AATTR+GLLT PL+DRFGIPIRLNF
Sbjct: 124 EILYPAMEDYQLDLIIGEGPAARSVKIDLAKFTLVAATTRLGLLTTPLRDRFGIPIRLNF 183

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y IE+L+ IVQR A+L  + ++D+ A EIA R+RGTPRIAGRLLRRV DFA V  AK I 
Sbjct: 184 YTIEELEYIVQRNARLFAVKISDDGAHEIARRARGTPRIAGRLLRRVCDFALVKQAKQID 243

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           R+IAD AL RL +D +G D LD RYL +IA  F GGPVGIETI+A LSEPRDAIED++EP
Sbjct: 244 RKIADEALSRLEVDHLGLDPLDRRYLLLIAETFLGGPVGIETIAAALSEPRDAIEDIVEP 303

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           Y++QQGFIQRT RGR+L   AW HLG+  P
Sbjct: 304 YLLQQGFIQRTARGRILTEKAWSHLGLAAP 333


>gi|160896674|ref|YP_001562256.1| Holliday junction DNA helicase RuvB [Delftia acidovorans SPH-1]
 gi|238687184|sp|A9BUG8|RUVB_DELAS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|160362258|gb|ABX33871.1| Holliday junction DNA helicase RuvB [Delftia acidovorans SPH-1]
          Length = 361

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 194/332 (58%), Positives = 245/332 (73%), Gaps = 2/332 (0%)

Query: 3   DREGLLSRNVSQ--EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           D+  ++S       E+A    LRP+ L+E+ GQ +A   L++FI AA+ R EALDHVL  
Sbjct: 25  DKLRMISAAPVSRGEEAMERALRPKLLQEYVGQAKAREQLEIFIGAARKRNEALDHVLLF 84

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTL+ ++A ELGVN R TSGPV+ K  DLAALLTNLE  DVLFIDEIHRLS +
Sbjct: 85  GPPGLGKTTLSHIIAAELGVNLRQTSGPVLEKPKDLAALLTNLEANDVLFIDEIHRLSPV 144

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILYPA+ED+Q+D+M+GEGP+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  RL
Sbjct: 145 VEEILYPALEDYQIDIMIGEGPAARSIKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARL 204

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  E+L  IV+R A L    + DE A EIA RSRGTPRIA RLLRRVRD+A+V    +
Sbjct: 205 EFYTAEELARIVRRSAGLLNAPIDDEGAFEIARRSRGTPRIANRLLRRVRDYADVRGDGS 264

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           ITRE+AD AL  L +D  GFD +D + L  +   F GGPVG++ I+A + E    IED+I
Sbjct: 265 ITRELADRALAMLDVDPQGFDIMDRKLLEAVVHRFDGGPVGLDNIAASIGEEAGTIEDVI 324

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EPY+IQQGF+QRTPRGR+    A++HLG+ +P
Sbjct: 325 EPYLIQQGFLQRTPRGRMATQAAYRHLGLPVP 356


>gi|289626497|ref|ZP_06459451.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289650943|ref|ZP_06482286.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|298488208|ref|ZP_07006244.1| Holliday junction DNA helicase RuvB [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298157266|gb|EFH98350.1| Holliday junction DNA helicase RuvB [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|330868613|gb|EGH03322.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv.
           aesculi str. 0893_23]
 gi|330988970|gb|EGH87073.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 353

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 191/336 (56%), Positives = 249/336 (74%), Gaps = 2/336 (0%)

Query: 1   MMDREGLLSRN--VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M+D + L++      +++     +RP +L ++ GQ      +++FI+AA+ R EALDH L
Sbjct: 1   MIDADRLITAAGGRDRDEQMDRAIRPLSLADYIGQPTVREQMELFIQAARGRNEALDHTL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA ++A+E+GV+ +STSGPV+ + GDLAA+LTNLE  DVLFIDEIHRLS
Sbjct: 61  IFGPPGLGKTTLANIIAQEMGVSIKSTSGPVLERPGDLAAILTNLEPNDVLFIDEIHRLS 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            IVEE+LYPAMEDFQLD+M+GEGP+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  
Sbjct: 121 PIVEEVLYPAMEDFQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQ 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           RL FY I DL TIV R A + GL +  + A EIA R+RGTPRIA RLLRRVRDFAEV   
Sbjct: 181 RLEFYNIADLSTIVSRSAGILGLVIEPQGAFEIARRARGTPRIANRLLRRVRDFAEVRGN 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             ITR+ AD AL  L +D+ GFD  D R L  +   F GGPVG+++++A +SE R  IED
Sbjct: 241 GQITRQTADKALNLLDVDEHGFDHQDRRLLLTMIEKFDGGPVGVDSLAAAISEERHTIED 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           ++EPY+IQQG+I RTPRGR++   A+ H G++IP R
Sbjct: 301 VLEPYLIQQGYIMRTPRGRVVTRHAYLHFGLNIPSR 336


>gi|46143843|ref|ZP_00133974.2| COG2255: Holliday junction resolvasome, helicase subunit
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|303252522|ref|ZP_07338685.1| hypothetical protein APP2_1499 [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307247271|ref|ZP_07529320.1| Holliday junction ATP-dependent DNA helicase ruvB [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|307249499|ref|ZP_07531487.1| Holliday junction ATP-dependent DNA helicase ruvB [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|307256312|ref|ZP_07538095.1| Holliday junction ATP-dependent DNA helicase ruvB [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|307260745|ref|ZP_07542434.1| Holliday junction ATP-dependent DNA helicase ruvB [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|322514921|ref|ZP_08067936.1| crossover junction ATP-dependent DNA helicase RuvB [Actinobacillus
           ureae ATCC 25976]
 gi|171855132|sp|A3MZ06|RUVB_ACTP2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|302648490|gb|EFL78683.1| hypothetical protein APP2_1499 [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|306856244|gb|EFM88398.1| Holliday junction ATP-dependent DNA helicase ruvB [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306858492|gb|EFM90560.1| Holliday junction ATP-dependent DNA helicase ruvB [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306865138|gb|EFM97038.1| Holliday junction ATP-dependent DNA helicase ruvB [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306869584|gb|EFN01372.1| Holliday junction ATP-dependent DNA helicase ruvB [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|322119109|gb|EFX91263.1| crossover junction ATP-dependent DNA helicase RuvB [Actinobacillus
           ureae ATCC 25976]
          Length = 334

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 185/331 (55%), Positives = 246/331 (74%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + ++S +   +E+     +RP+ L ++ GQ      +++FI+AAK R EALDH+L 
Sbjct: 1   MIEADRIISASPKREEEVIDRAIRPKLLADYVGQPSVREQMEIFIKAAKLRDEALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPYDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            +EE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ ATTR G LT+PL+DRFGI  R
Sbjct: 121 AIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY ++DL +IV+R A    L ++ + A E+A RSRGTPRIA RLLRRVRD+A+V +  
Sbjct: 181 LEFYSVDDLTSIVKRSADCLNLNLSPDGAYEVARRSRGTPRIANRLLRRVRDYADVRNNG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT +IA  AL  L +D  GFD +D++ L  I   F GGPVG++ ++A + E RD IED+
Sbjct: 241 VITSDIAKQALAMLDVDSEGFDFMDIKLLQAIVERFDGGPVGLDNLAAAIGEERDTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           +EPY+IQQGF+QRTPRGR+     + HLGI 
Sbjct: 301 LEPYLIQQGFLQRTPRGRIATSRTYAHLGIA 331


>gi|307245099|ref|ZP_07527192.1| Holliday junction ATP-dependent DNA helicase ruvB [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307254054|ref|ZP_07535901.1| Holliday junction ATP-dependent DNA helicase ruvB [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307258510|ref|ZP_07540247.1| Holliday junction ATP-dependent DNA helicase ruvB [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306853988|gb|EFM86200.1| Holliday junction ATP-dependent DNA helicase ruvB [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306862979|gb|EFM94926.1| Holliday junction ATP-dependent DNA helicase ruvB [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306867414|gb|EFM99265.1| Holliday junction ATP-dependent DNA helicase ruvB [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
          Length = 334

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 186/331 (56%), Positives = 246/331 (74%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + ++S +   +E+     +RP+ L ++ GQ      +++FI+AAK R EALDH+L 
Sbjct: 1   MIEADRIISASPKREEEVIDRAIRPKLLADYVGQPSVREQMEIFIKAAKLRDEALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPYDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            +EE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ ATTR G LT+PL+DRFGI  R
Sbjct: 121 AIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY ++DL +IV+R A    L ++  AA E+A RSRGTPRIA RLLRRVRD+A+V +  
Sbjct: 181 LEFYSVDDLTSIVKRSADCLNLNLSPNAAYEVARRSRGTPRIANRLLRRVRDYADVRNNG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT +IA  AL  L +D  GFD +D++ L  I   F GGPVG++ ++A + E RD IED+
Sbjct: 241 VITSDIAKQALAMLDVDSEGFDFMDIKLLQAIVERFDGGPVGLDNLAAAIGEERDTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           +EPY+IQQGF+QRTPRGR+     + HLGI 
Sbjct: 301 LEPYLIQQGFLQRTPRGRIATSRTYAHLGIA 331


>gi|295109924|emb|CBL23877.1| Holliday junction DNA helicase, RuvB subunit [Ruminococcus obeum
           A2-162]
          Length = 334

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 172/334 (51%), Positives = 247/334 (73%), Gaps = 2/334 (0%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD+  +++ +V +ED  +   LRP+TL+E+ GQ +    LK++IEAAK R +ALDHVLF 
Sbjct: 1   MDK-RMITTDVIEEDLPLEGNLRPQTLDEYIGQEKTKKTLKIYIEAAKQRHDALDHVLFY 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTL+ ++A E+G + + TSGP I K G++AA+L NL++ D+LF+DEIHRL+  
Sbjct: 60  GPPGLGKTTLSGIIANEMGTHMKVTSGPAIEKPGEMAAILNNLQEGDILFVDEIHRLNRQ 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDF +D+M+G+G SARS++++L +FTL+ ATTR GLL+ PL+DRFG+   L
Sbjct: 120 VEEVLYPAMEDFAIDIMIGKGASARSIRLDLPKFTLVGATTRAGLLSAPLRDRFGVMHHL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY+ ++L+TI+ R A++ G+ +    A EIA RSRGTPR+A RLL+RVRDFA+V +   
Sbjct: 180 EFYDQKELQTIILRSAEVLGVEIDTRGAAEIAKRSRGTPRLANRLLKRVRDFAQVKYDGR 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           IT E+A  AL  L +D+ G D++D R L  +  NF GGPVG+ET++A + E    +ED+ 
Sbjct: 240 ITYEVAVFALDLLEVDQYGLDKIDRRILQTLIVNFQGGPVGLETLAAAIGEDAGTLEDVY 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           EPY++Q GF+ RTPRGR    +A++HLG + P +
Sbjct: 300 EPYLLQNGFLNRTPRGRTASALAYEHLGFEKPAQ 333


>gi|313901947|ref|ZP_07835364.1| Holliday junction DNA helicase subunit RuvB [Thermaerobacter
           subterraneus DSM 13965]
 gi|313467793|gb|EFR63290.1| Holliday junction DNA helicase subunit RuvB [Thermaerobacter
           subterraneus DSM 13965]
          Length = 380

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 188/333 (56%), Positives = 252/333 (75%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ E ++S  +   DA +   LRP++L++F GQ      L ++I+AA+ R +ALDHVL 
Sbjct: 1   MIEEERVVSSRLQAGDAPLEAGLRPQSLDDFPGQERVKEKLSIYIQAARERGDALDHVLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKT+LAQV+ARELGV FR TSGP I +AGDLAALLTNL DRDVLFIDEIHRL  
Sbjct: 61  YGPPGLGKTSLAQVIARELGVGFRMTSGPAIERAGDLAALLTNLNDRDVLFIDEIHRLPR 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEEILYPAMEDF LDL++G+GP+ARS++I+L RFTL+ ATTR G LT PL+DRFG+ +R
Sbjct: 121 PVEEILYPAMEDFALDLIIGKGPAARSLRIDLPRFTLVGATTRAGRLTGPLRDRFGVLLR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y  E+L  IV R A + G+A+  E A E+A R+RGTPR+A RLLRR+RD+A+V    
Sbjct: 181 LEYYRPEELTRIVLRAAGILGVAIDPEGAAEVARRARGTPRVANRLLRRLRDYAQVRAEG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT E+A A L  + +D +G D+ D R L ++A+++GGGPVG+ET++A + E  + IED+
Sbjct: 241 VITAEVARAGLDLMEVDPLGLDRADRRLLAVMAQHYGGGPVGLETLAAAIGEEPETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
            EPY++Q GF+QRTPRGR+L   A++HLG+ +P
Sbjct: 301 YEPYLMQMGFLQRTPRGRVLARRAYEHLGLPVP 333


>gi|330959266|gb|EGH59526.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 353

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 191/336 (56%), Positives = 250/336 (74%), Gaps = 2/336 (0%)

Query: 1   MMDREGLLSR--NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M+D + L++      +++     +RP +L ++ GQ      +++FI+AA+ R+EALDH L
Sbjct: 1   MIDADRLITAVGGRDRDEQMDRAIRPLSLADYIGQPTVREQMELFIQAARGRSEALDHTL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA ++A+E+GV+ +STSGPV+ + GDLAA+LTNLE  DVLFIDEIHRLS
Sbjct: 61  IFGPPGLGKTTLANIIAQEMGVSIKSTSGPVLERPGDLAAILTNLEPNDVLFIDEIHRLS 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            IVEE+LYPAMEDFQLD+M+GEGP+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  
Sbjct: 121 PIVEEVLYPAMEDFQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQ 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           RL FY I DL TIV R A + GL +  + A EIA R+RGTPRIA RLLRRVRDFAEV   
Sbjct: 181 RLEFYNIADLSTIVSRSAGILGLVIEPKGAFEIARRARGTPRIANRLLRRVRDFAEVRGN 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             ITR+ AD AL  L +D+ GFD  D R L  +   F GGPVG+++++A +SE R  IED
Sbjct: 241 GQITRQTADKALNLLDVDEHGFDHQDRRLLLTMIEKFDGGPVGVDSLAAAISEERHTIED 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           ++EPY+IQQG+I RTPRGR++   A+ H G++IP R
Sbjct: 301 VLEPYLIQQGYIMRTPRGRVVTRHAYLHFGLNIPAR 336


>gi|319406257|emb|CBI79894.1| Holliday junction DNA helicase RuvB [Bartonella sp. AR 15-3]
          Length = 360

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 230/330 (69%), Positives = 271/330 (82%), Gaps = 1/330 (0%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           D + LL       D D   LRP+TL++F GQ  A +NLK+FIEAA+ R EALDHVLFVGP
Sbjct: 5   DPQRLLGAIPLPNDPD-RSLRPQTLDDFIGQEAARANLKIFIEAARTRHEALDHVLFVGP 63

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTL+Q++A+ELGVNFRSTSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRL+  +E
Sbjct: 64  PGLGKTTLSQIMAKELGVNFRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLNPAIE 123

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILYPAMED+QLDL++GEGP+ARSVKI+L++FTL+AATTR+GLLT PL+DRFGIPIRLNF
Sbjct: 124 EILYPAMEDYQLDLIIGEGPAARSVKIDLAKFTLVAATTRLGLLTTPLRDRFGIPIRLNF 183

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y IE+L+ IVQR A+L  + + D+ A EIA RSRGTPRIAGRLLRRV DFA V  A+ I 
Sbjct: 184 YTIEELEYIVQRNARLFSVQINDDGAHEIARRSRGTPRIAGRLLRRVCDFALVKKAEKID 243

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             IAD AL RL +D +G D LD RYL +IA+ F GGPVGIETI+A LSEPRDAIED+IEP
Sbjct: 244 HTIADEALSRLEVDHLGLDPLDRRYLILIAQTFLGGPVGIETIAAALSEPRDAIEDIIEP 303

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           Y++QQGFIQRT RGR+L   AW HL +  P
Sbjct: 304 YLLQQGFIQRTARGRILTEKAWTHLKLCPP 333


>gi|114330311|ref|YP_746533.1| Holliday junction DNA helicase B [Nitrosomonas eutropha C91]
 gi|122314643|sp|Q0AJA3|RUVB_NITEC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|114307325|gb|ABI58568.1| Holliday junction DNA helicase RuvB [Nitrosomonas eutropha C91]
          Length = 346

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 196/336 (58%), Positives = 249/336 (74%), Gaps = 2/336 (0%)

Query: 1   MMDREGLLSRNV--SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M++ + +++ +   SQE+     LRP  L+++ GQ +    LK+FIEAA+ R EALDHVL
Sbjct: 1   MIESDRIITASPFSSQEEVIERALRPVQLDDYVGQEKIREQLKIFIEAARQRQEALDHVL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA ++ARE+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS
Sbjct: 61  LFGPPGLGKTTLAHIIAREMGVNLRHTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLS 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            +VEEILYPAMED+QLD+M+GEG +ARSVKI+L  FTL+ ATTR G+LTNPL+DRFGI  
Sbjct: 121 PVVEEILYPAMEDYQLDIMIGEGVAARSVKIDLPSFTLVGATTRAGMLTNPLRDRFGIVS 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           RL FY  ++L  IV R A L  + +T + A EIA RSRGTPRIA RLLRRVRDFAEV   
Sbjct: 181 RLEFYTSDELSKIVTRSAGLLDVDITADGAREIACRSRGTPRIANRLLRRVRDFAEVRAN 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             I R++ADAAL  L +D  G D LD + L  +   FGGGPVG++ ++A ++E RD IE+
Sbjct: 241 GRIDRQVADAALQMLDVDAAGLDVLDRKLLLAVLEKFGGGPVGVDNLAAAINEERDTIEE 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           ++EPY+IQQGF+QRTPRGR+   + +QH  I    +
Sbjct: 301 VLEPYLIQQGFLQRTPRGRMATTMTYQHFDIIPLQQ 336


>gi|85059240|ref|YP_454942.1| Holliday junction DNA helicase B [Sodalis glossinidius str.
           'morsitans']
 gi|97190324|sp|Q2NTI8|RUVB_SODGM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|84779760|dbj|BAE74537.1| holliday junction DNA helicase RuvB [Sodalis glossinidius str.
           'morsitans']
          Length = 338

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 188/331 (56%), Positives = 245/331 (74%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSRN-VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S   V+ E+     +RP+ LE++ GQ      +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRLMSAAAVTGEEVIDRAIRPKKLEDYIGQPHVLEQMEIFIQAAKMRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LT+LE  DVLFIDEIHRLS 
Sbjct: 61  SGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTSLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ RS+KI L  FTL+ ATTR G LT PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAGRSIKIELPPFTLVGATTRAGSLTPPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY+  DL+ IV R A    L +T+  A EIA R+RGTPRIA RLLRRVRDFAEV  A 
Sbjct: 181 LEFYQTGDLQHIVSRSAVCLALNITEGGAREIARRARGTPRIANRLLRRVRDFAEVRAAG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT ++A +AL  L +D  GFD +D + L  I   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 HITDDVAVSALNMLNVDTEGFDFMDRKLLLAIIDKFVGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           +EP++IQQGFIQRTPRGR+    A++H G++
Sbjct: 301 LEPFLIQQGFIQRTPRGRIATVHAYRHFGLE 331


>gi|325267529|ref|ZP_08134182.1| crossover junction ATP-dependent DNA helicase RuvB [Kingella
           denitrificans ATCC 33394]
 gi|324981054|gb|EGC16713.1| crossover junction ATP-dependent DNA helicase RuvB [Kingella
           denitrificans ATCC 33394]
          Length = 347

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 196/327 (59%), Positives = 245/327 (74%), Gaps = 2/327 (0%)

Query: 6   GLLSRN--VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
            L+S     +QE+     LRP+ L ++ GQ +A   L +FI+AAK R EALDH L  GPP
Sbjct: 18  RLISAQKLSTQEEQLERALRPKFLADYIGQHKAKEQLDIFIQAAKHRGEALDHTLLFGPP 77

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++ARELGVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VEE
Sbjct: 78  GLGKTTLAHIIARELGVNLRQTSGPVLERAGDLAALLTNLEPHDVLFIDEIHRLSPVVEE 137

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILYPAMED+QLD+M+GEGP+ARSVKI+L  FTL+ ATTR G+LTNPL+DRFGI  RL FY
Sbjct: 138 ILYPAMEDYQLDIMIGEGPAARSVKIDLPPFTLVGATTRAGMLTNPLRDRFGIVARLEFY 197

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           + +DL+TIV R A+L  + + ++ A E+A RSRGTPRIA RLLRRVRDFA+V  A  I  
Sbjct: 198 QPQDLRTIVARSAQLLDMNLNEQGAWEVACRSRGTPRIANRLLRRVRDFAQVKKAACIDA 257

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
            +ADAAL  L +DK G D +D ++L  +   F GGPVG+E ++A + E  D IED+IEPY
Sbjct: 258 AVADAALSLLDVDKAGLDMMDRKFLEAVLHKFSGGPVGLENVAAAIGESTDTIEDVIEPY 317

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGID 330
           +IQQG +QRTPRGR+    A++H G+ 
Sbjct: 318 LIQQGLLQRTPRGRVATAGAFEHFGLP 344


>gi|269963131|ref|ZP_06177466.1| Holliday junction DNA helicase RuvB [Vibrio harveyi 1DA3]
 gi|269832095|gb|EEZ86219.1| Holliday junction DNA helicase RuvB [Vibrio harveyi 1DA3]
          Length = 334

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 189/333 (56%), Positives = 247/333 (74%), Gaps = 3/333 (0%)

Query: 1   MMDREGLLSRNVS---QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M++ + L++        ED     +RP+ L ++ GQ      +++FI+AA+ R EALDH+
Sbjct: 1   MIEADRLIAPENPSFRDEDVIDRAIRPKKLADYQGQDHVRDQMEIFIKAAQLRNEALDHL 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTLA +VA E+ VN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRL
Sbjct: 61  LIFGPPGLGKTTLANIVANEMEVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           S +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI 
Sbjct: 121 SPMVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIT 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            RL +Y+++DL+ IVQR A   GL++  E A E+A R+RGTPRIA RLLRRVRD+AEV  
Sbjct: 181 QRLEYYKVKDLQDIVQRSADCLGLSMEAEGALEVARRARGTPRIANRLLRRVRDYAEVKG 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
              I  E+AD AL  L +D  GFD +D + L  I   FGGGPVG++ ++A + E +D IE
Sbjct: 241 NGHICAEVADKALNMLDVDAKGFDYMDRKLLLAIMEKFGGGPVGLDNMAAAIGEEKDTIE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           D++EPY+IQQG++QRTPRGR+    A+ H GI+
Sbjct: 301 DVLEPYLIQQGYLQRTPRGRIATDRAYLHFGIE 333


>gi|167035194|ref|YP_001670425.1| Holliday junction DNA helicase RuvB [Pseudomonas putida GB-1]
 gi|189046042|sp|B0KTJ2|RUVB_PSEPG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|166861682|gb|ABZ00090.1| Holliday junction DNA helicase RuvB [Pseudomonas putida GB-1]
          Length = 348

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 187/335 (55%), Positives = 250/335 (74%), Gaps = 1/335 (0%)

Query: 1   MMDREGLLSRN-VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L++ +   +E+     +RP +L+++ GQ      + +FI+AA+ R+E+LDH L 
Sbjct: 1   MIEADRLIAASGRDREEVQDRAIRPLSLDDYIGQPVVREQMALFIQAARGRSESLDHTLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A E+GV+ +STSGP++ + GDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIIAHEMGVSVKSTSGPILERPGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMEDFQLD+M+GEGP+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDFQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY  +DL TIV R A + GLA+ D  A EIA R+RGTPRIA RLLRRVRD+AEV    
Sbjct: 181 LEFYSDKDLATIVSRSANILGLAIEDLGAYEIARRARGTPRIANRLLRRVRDYAEVRGKG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT+ +AD AL  L +D+ GFD  D R L  +   F GGPVG++ ++A +SE R  IED+
Sbjct: 241 QITKAVADMALNLLDVDERGFDHSDRRLLLTMIEKFDGGPVGVDNLAAAISEERHTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           +EPY+IQQG+I RTPRGR++   A+ H G++IP R
Sbjct: 301 LEPYLIQQGYIMRTPRGRVVTRHAYLHFGLNIPGR 335


>gi|91227613|ref|ZP_01261917.1| Holliday junction DNA helicase B [Vibrio alginolyticus 12G01]
 gi|91188506|gb|EAS74799.1| Holliday junction DNA helicase B [Vibrio alginolyticus 12G01]
          Length = 334

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 190/333 (57%), Positives = 248/333 (74%), Gaps = 3/333 (0%)

Query: 1   MMDREGLLSRNVS---QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M++ + L++        ED     +RP+ L ++ GQ      +++FI+AA+ R+EALDH+
Sbjct: 1   MIEADRLIAPENPAFRDEDVIDRAIRPKKLADYQGQDHVRDQMEIFIKAAQLRSEALDHL 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTLA +VA E+ VN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRL
Sbjct: 61  LIFGPPGLGKTTLANIVANEMEVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           S +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI 
Sbjct: 121 SPMVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIT 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            RL FY+I+DL+ IVQR A   GL++  E A E+A R+RGTPRIA RLLRRVRD+AEV  
Sbjct: 181 QRLEFYKIKDLQDIVQRSADCLGLSMEPEGALEVARRARGTPRIANRLLRRVRDYAEVKG 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
              I  ++AD AL  L +D  GFD +D + L  I   FGGGPVG++ ++A + E +D IE
Sbjct: 241 NGHICADVADKALNMLDVDAEGFDYMDRKLLLAIMEKFGGGPVGLDNMAAAIGEEKDTIE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           D++EPY+IQQG++QRTPRGR+    A+ H GI+
Sbjct: 301 DVLEPYLIQQGYLQRTPRGRIATDRAYLHFGIE 333


>gi|330828298|ref|YP_004391250.1| Holliday junction ATP-dependent DNA helicase ruvB [Aeromonas
           veronii B565]
 gi|328803434|gb|AEB48633.1| Holliday junction ATP-dependent DNA helicase ruvB [Aeromonas
           veronii B565]
          Length = 336

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 190/334 (56%), Positives = 249/334 (74%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S + ++ED  I   +RP+ L ++TGQ   C  +++FIEAA+ R EALDH+L 
Sbjct: 1   MIEADRLISASAAREDDIIDRAIRPKKLADYTGQDTVCEQMEIFIEAARQRGEALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN ++TSGPV+ KAGDLAALLTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNIKTTSGPVLEKAGDLAALLTNLEPNDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY ++DL  IV R A+  GL +T++ A E+A RSRGTPRIA RLLRRVRDFA+V    
Sbjct: 181 LEFYNVKDLTDIVSRSARCLGLDMTEDGAIEVARRSRGTPRIANRLLRRVRDFAQVKSDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I   IA  A+  L +D  GFD +D + L  +   F GGPVG++ ++A + E +D IED+
Sbjct: 241 RIDGPIAARAMDMLDVDNEGFDFMDRKLLLAVIDKFMGGPVGLDNLAAAIGEEKDTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +EPY+IQQG++QRTPRGR+    A+ H G+  P 
Sbjct: 301 LEPYLIQQGYLQRTPRGRIATTRAYAHFGLQRPD 334


>gi|330502220|ref|YP_004379089.1| Holliday junction DNA helicase RuvB [Pseudomonas mendocina NK-01]
 gi|328916506|gb|AEB57337.1| Holliday junction DNA helicase RuvB [Pseudomonas mendocina NK-01]
          Length = 350

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 188/335 (56%), Positives = 247/335 (73%), Gaps = 1/335 (0%)

Query: 1   MMDREGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L++ +  + E+     +RP  L ++ GQ      + +FI+AA+ RAEALDH L 
Sbjct: 1   MIEADRLITASPREREEQQDRAIRPLRLADYIGQPVVREQMALFIQAARGRAEALDHTLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A E+G + +STSGPV+ + GDLAALLTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIIAEEMGSSIKSTSGPVLERPGDLAALLTNLESGDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMEDFQLD+M+GEGP+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDFQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY I+DL TIV R A + GL +  + A EIA R+RGTPRIA RLLRRVRDFAEV    
Sbjct: 181 LEFYGIDDLATIVSRSAGILGLPIEAKGAFEIARRARGTPRIANRLLRRVRDFAEVRGTG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I++ IAD AL  L +D+ GFD  D R L  +   F GGPVG+++++A + E R  IED+
Sbjct: 241 HISQSIADQALNLLDVDERGFDHSDRRLLLAMIEKFDGGPVGLDSLAAAIGEERHTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           +EPY+IQQG++ RTPRGR++   A+ H G++IP R
Sbjct: 301 LEPYLIQQGYMMRTPRGRVVTRHAYLHFGLNIPKR 335


>gi|254473086|ref|ZP_05086484.1| Holliday junction DNA helicase RuvB [Pseudovibrio sp. JE062]
 gi|211957807|gb|EEA93009.1| Holliday junction DNA helicase RuvB [Pseudovibrio sp. JE062]
          Length = 348

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 231/334 (69%), Positives = 284/334 (85%), Gaps = 2/334 (0%)

Query: 1   MMD-REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++  + L++  +  ++ D S +RP+TL++FTGQ +A  NLKVFI AAKAR EALDHVLF
Sbjct: 1   MIEGEDRLVTPEIRGDEID-SGMRPQTLDDFTGQAQARENLKVFIGAAKARNEALDHVLF 59

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
           VGPPGLGKTTLAQ++ARELGVNFR+TSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL+ 
Sbjct: 60  VGPPGLGKTTLAQIMARELGVNFRATSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLNP 119

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEE+LYPAMED+QLDL++GEGP+ARSVKI+L++FTL+AATTR+GLLT PL+DRFGIP+R
Sbjct: 120 AVEEVLYPAMEDYQLDLIIGEGPAARSVKIDLAKFTLVAATTRIGLLTTPLRDRFGIPVR 179

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY  ++L+ IV+RGA+L G+ ++D+ A EIA RSRGTPRIAGRLLRRVRDFA VA   
Sbjct: 180 LEFYTPQELELIVKRGARLLGIGMSDDGATEIAKRSRGTPRIAGRLLRRVRDFAIVAGDA 239

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I   +AD AL +L +D  GFD LD RYL  IA NFGGGPVGIETI+A LSEPRDAIE++
Sbjct: 240 DIDAGLADRALRQLEVDSAGFDSLDRRYLKQIAMNFGGGPVGIETIAAALSEPRDAIEEI 299

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +EPY+IQ G++QRTPRGR+L PIA++HLG+ +P 
Sbjct: 300 VEPYLIQNGYLQRTPRGRILTPIAFKHLGLAVPD 333


>gi|187778349|ref|ZP_02994822.1| hypothetical protein CLOSPO_01941 [Clostridium sporogenes ATCC
           15579]
 gi|187771974|gb|EDU35776.1| hypothetical protein CLOSPO_01941 [Clostridium sporogenes ATCC
           15579]
          Length = 342

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 176/327 (53%), Positives = 235/327 (71%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
              +++    ++D +   LRP TL+E+ GQ +  +NL +FI+AAK R E+LDHVLF GPP
Sbjct: 2   ENRMVTPFDVEDDKEQYSLRPTTLKEYIGQEKVKANLDIFIQAAKKRGESLDHVLFYGPP 61

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++A E+  N + TSGP I KAGDLAA+LT+L D DVLFIDEIHRL+  +EE
Sbjct: 62  GLGKTTLANIIANEMTGNLKVTSGPAIEKAGDLAAILTSLTDYDVLFIDEIHRLNRSIEE 121

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILYPAMED+ LD+++G+G +A+S++++L +FTLI ATTRVGLLT+PL+DRFG+   + FY
Sbjct: 122 ILYPAMEDYALDIVIGKGAAAKSIRLDLPKFTLIGATTRVGLLTSPLRDRFGMLCAMEFY 181

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
             E+L  IV R A +  + +  EAA EI  RSRGTPRIA RLL+RVRD+ +V H   I  
Sbjct: 182 TDEELMEIVVRSAAILNVNICKEAAFEIGKRSRGTPRIANRLLKRVRDYCDVKHDGDIDL 241

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           + A AAL  L +DK G D++D + L  I  NF GGPVG+ET++  + E  D IED+ EPY
Sbjct: 242 QGAKAALDLLEVDKEGLDKIDNKILEAIIFNFKGGPVGLETLAYFIGEELDTIEDVYEPY 301

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGID 330
           +IQ+GFI RTPRGR+    A+ H G+ 
Sbjct: 302 LIQKGFIMRTPRGRVASEKAYNHFGVT 328


>gi|153217382|ref|ZP_01951133.1| Holliday junction DNA helicase RuvB [Vibrio cholerae 1587]
 gi|153830580|ref|ZP_01983247.1| Holliday junction DNA helicase RuvB [Vibrio cholerae 623-39]
 gi|124113600|gb|EAY32420.1| Holliday junction DNA helicase RuvB [Vibrio cholerae 1587]
 gi|148873942|gb|EDL72077.1| Holliday junction DNA helicase RuvB [Vibrio cholerae 623-39]
 gi|327484397|gb|AEA78804.1| Holliday junction DNA helicase RuvB [Vibrio cholerae LMA3894-4]
          Length = 334

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 188/333 (56%), Positives = 247/333 (74%), Gaps = 3/333 (0%)

Query: 1   MMDREGLL---SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M++ + L+   S +   E+     +RP+ L ++ GQ      +++FI+AA+ R EALDH+
Sbjct: 1   MIEADRLIAPTSNHFKDEEVIDRAIRPKKLADYQGQDHVRDQMEIFIQAAQMRQEALDHL 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRL
Sbjct: 61  LIFGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           S +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI 
Sbjct: 121 SPMVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIV 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            RL +Y++ DL+ IVQR A+  GL++  E A E+A R+RGTPRIA RLLRRVRD+AEV  
Sbjct: 181 QRLEYYKVADLQHIVQRSAQCLGLSMDSEGALEVARRARGTPRIANRLLRRVRDYAEVKG 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
              I  + AD AL  L +D  GFD +D + L  I   F GGPVGI+ ++A + E +D IE
Sbjct: 241 DGHICAQTADRALNMLDVDHQGFDYMDRKLLLAIMEKFSGGPVGIDNLAAAIGEEKDTIE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           D++EP++IQQG++QRTPRGR+    A+ H GI+
Sbjct: 301 DVLEPFLIQQGYLQRTPRGRIATDRAYLHFGIE 333


>gi|326386114|ref|ZP_08207738.1| Holliday junction DNA helicase B [Novosphingobium nitrogenifigens
           DSM 19370]
 gi|326209339|gb|EGD60132.1| Holliday junction DNA helicase B [Novosphingobium nitrogenifigens
           DSM 19370]
          Length = 346

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 216/333 (64%), Positives = 262/333 (78%), Gaps = 1/333 (0%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M    LL+     ED D + LRP+TL EF GQ  A  NL+VFIE+A+ R E++DHVLF G
Sbjct: 1   MTDNPLLTPQRQPEDVD-AALRPKTLGEFIGQEGARENLRVFIESARQRRESMDHVLFFG 59

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLAQ++ARELGVNFR+TSGPVIAK+GDLAALLTNLE+ DVLFIDEIHRL+  V
Sbjct: 60  PPGLGKTTLAQIIARELGVNFRATSGPVIAKSGDLAALLTNLEEGDVLFIDEIHRLNPQV 119

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMED  LDL++GEGPSARSV+I+L  FTLI ATTR GLL  PL+DRFGIP+RL 
Sbjct: 120 EEVLYPAMEDRALDLIIGEGPSARSVRIDLPGFTLIGATTRQGLLQTPLRDRFGIPVRLQ 179

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY + +L+ +V RGA L G+ +  E A EIA R+RGTPR+AGRLLRRVRDFA+VA + TI
Sbjct: 180 FYTVAELERVVTRGANLLGIGIEPEGAHEIARRARGTPRVAGRLLRRVRDFAQVAGSPTI 239

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T+ IAD +L RL +DK+G D  D RYL MIA  + GGPVG+ET++AGLSEPRD IE++IE
Sbjct: 240 TQAIADKSLTRLEVDKLGLDLQDRRYLMMIADIYKGGPVGVETLAAGLSEPRDTIEEVIE 299

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           PY+IQ G + RT RGR L   AW HLG+ +P +
Sbjct: 300 PYLIQLGLVARTARGRCLNDRAWHHLGLPVPQQ 332


>gi|167750455|ref|ZP_02422582.1| hypothetical protein EUBSIR_01431 [Eubacterium siraeum DSM 15702]
 gi|167656606|gb|EDS00736.1| hypothetical protein EUBSIR_01431 [Eubacterium siraeum DSM 15702]
 gi|291557652|emb|CBL34769.1| Holliday junction DNA helicase, RuvB subunit [Eubacterium siraeum
           V10Sc8a]
          Length = 350

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 186/325 (57%), Positives = 238/325 (73%), Gaps = 1/325 (0%)

Query: 6   GLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
            ++    S ED D+   LRPR L E+ GQ +   NL+V+I+AAK R E+LDHVL  GPPG
Sbjct: 17  RIVEPQFSAEDTDVEFSLRPRKLNEYIGQEKVKENLQVYIQAAKKRNESLDHVLLYGPPG 76

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLA ++A E+GVNF+ TSGP I K G+LAALLT L+  DVLF+DEIHRLS  VEEI
Sbjct: 77  LGKTTLAGIIANEMGVNFKVTSGPAIEKPGELAALLTGLQAGDVLFVDEIHRLSRQVEEI 136

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPA+ED  LD+M+G+GPSA+S++++L+RFTLI ATTR G LT PL+DRFG+ +RL  Y 
Sbjct: 137 LYPALEDCVLDIMIGKGPSAQSIRVDLNRFTLIGATTRAGQLTGPLRDRFGVIMRLEMYT 196

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            ++L  IV R + +  +      A EIA RSRGTPRIA RLL+RVRDFAEV     IT+E
Sbjct: 197 PDELCDIVMRSSVILSIPCDRSGAMEIAKRSRGTPRIANRLLKRVRDFAEVMGNGKITKE 256

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +AD AL RL IDK+G D LD R+LTMI   + GGPVG+ET+++ L E    +ED+ EPY+
Sbjct: 257 MADIALNRLEIDKLGLDSLDKRFLTMIINGYNGGPVGLETLASALGEESVTLEDVCEPYL 316

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGI 329
           +Q GFI RTPRGR    +A++HLG+
Sbjct: 317 MQLGFISRTPRGRCATELAYKHLGL 341


>gi|326795235|ref|YP_004313055.1| Holliday junction ATP-dependent DNA helicase ruvB [Marinomonas
           mediterranea MMB-1]
 gi|326545999|gb|ADZ91219.1| Holliday junction ATP-dependent DNA helicase ruvB [Marinomonas
           mediterranea MMB-1]
          Length = 338

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 178/333 (53%), Positives = 240/333 (72%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++++ ++S      E      +RP+ L+E+ GQ      +++FI+AA+ R+E LDH L 
Sbjct: 1   MIEQDRIISSETQGSESQVDRAIRPQMLDEYIGQPIVREQMEIFIQAARQRSEPLDHTLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+G + ++TSGPV+ +AGDLAALLTNLED DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGADIKTTSGPVLERAGDLAALLTNLEDGDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            +EE+LYPAMED+QLD+M+GEGP+ARS+KI +  FTL+ ATTR GLLT+PL+DRFGI  R
Sbjct: 121 AIEEVLYPAMEDYQLDIMIGEGPAARSIKIEIPPFTLVGATTRAGLLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY+++ L TIV R A   G+ + +    E+A RSRGTPRIA RLLRRVRD A+V   K
Sbjct: 181 LEFYDVQSLTTIVGRSASKMGVVLDESGCFEVARRSRGTPRIANRLLRRVRDVAQVGGEK 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            +  ++A  AL  L++D  GFD LD R L  +   F G PVG+++I+A + E +D IED+
Sbjct: 241 VVGEKVARRALDMLSVDSQGFDHLDRRMLLTMIEKFDGRPVGLDSIAAAVGEDKDTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           IEP++IQQGF+ RTPRGR +   A++H    +P
Sbjct: 301 IEPFLIQQGFVIRTPRGRQVTKRAYEHFNYQLP 333


>gi|153814821|ref|ZP_01967489.1| hypothetical protein RUMTOR_01036 [Ruminococcus torques ATCC 27756]
 gi|317500340|ref|ZP_07958565.1| Holliday junction DNA helicase RuvB [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331089651|ref|ZP_08338550.1| Holliday junction ATP-dependent DNA helicase ruvB [Lachnospiraceae
           bacterium 3_1_46FAA]
 gi|145847852|gb|EDK24770.1| hypothetical protein RUMTOR_01036 [Ruminococcus torques ATCC 27756]
 gi|316898281|gb|EFV20327.1| Holliday junction DNA helicase RuvB [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330405019|gb|EGG84557.1| Holliday junction ATP-dependent DNA helicase ruvB [Lachnospiraceae
           bacterium 3_1_46FAA]
          Length = 334

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 172/326 (52%), Positives = 242/326 (74%), Gaps = 1/326 (0%)

Query: 6   GLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
            +++    +ED  I   LRP++L E+ GQ +A   L ++IEAAKAR E LDHVLF GPPG
Sbjct: 4   RIITTENLEEDIKIEGELRPQSLGEYIGQEKAKETLGIYIEAAKARGETLDHVLFYGPPG 63

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLA ++A E+GV+ + TSGP I K G++AA+L  L++ DVLF+DEIHRL+  VEE+
Sbjct: 64  LGKTTLAGIIANEMGVHMKVTSGPAIEKPGEMAAILNGLQEGDVLFVDEIHRLNRQVEEV 123

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPAMEDF +D+M+G+G +ARS+++NL +FTL+ ATTR G+LT PL+DRFG+  RL  Y 
Sbjct: 124 LYPAMEDFAIDIMIGKGSAARSIRLNLPKFTLVGATTRAGMLTAPLRDRFGVMHRLELYT 183

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            E+LKTI+ R A +  + + ++ A E+A RSRGTPR+A RLL+RVRDFA+V +   IT++
Sbjct: 184 PEELKTIILRSASVLNVEIEEDGALELARRSRGTPRLANRLLKRVRDFAQVKYDGKITKK 243

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +AD AL  L +DK G D +D   L  +   F GGPVG++T++A +SE    +ED+ EPY+
Sbjct: 244 VADYALDLLDVDKYGLDHIDRTILLTMIEKFQGGPVGLDTLAAAISEDAGTLEDVYEPYL 303

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGID 330
           ++ GFIQRTPRGR++  +A++HLGI+
Sbjct: 304 LKNGFIQRTPRGRIVTDLAYRHLGIE 329


>gi|146329062|ref|YP_001210060.1| Holliday junction DNA helicase RuvB [Dichelobacter nodosus
           VCS1703A]
 gi|166231489|sp|A5EXH6|RUVB_DICNV RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|146232532|gb|ABQ13510.1| holliday junction DNA helicase RuvB [Dichelobacter nodosus
           VCS1703A]
          Length = 338

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 193/334 (57%), Positives = 245/334 (73%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLS-RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S +  S+E      +RP+ L ++ GQ    + L +FIEAA  R EALDHVL 
Sbjct: 1   MIESDRLVSGKARSEEQVIERAVRPKRLTDYVGQESLKAQLSIFIEAALKRQEALDHVLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A ELGV  R TSGP++ KAGDLAALLTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLAAIIAFELGVGLRQTSGPILDKAGDLAALLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEE+LYPAMED+Q+D+M+GEGP+ARS+K++L  FTLI ATTR GLLT PL+DRFGI   
Sbjct: 121 AVEEVLYPAMEDYQIDIMIGEGPAARSIKLDLPPFTLIGATTRSGLLTAPLRDRFGISHH 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y  ++L  IV R AKL  +A+  E A EI  RSRGTPRIA RLLRRVRD+A+V    
Sbjct: 181 LQYYHHDELTQIVMRSAKLFEVAIDKEGAEEIGRRSRGTPRIANRLLRRVRDYAQVRGDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT+ +AD AL  LA+D +GFD LD R L  +   FGGGP GI+T++  + E R  +ED+
Sbjct: 241 MITKALADEALELLAVDHLGFDALDRRMLLCLVEYFGGGPTGIDTLAVSVGEERGTLEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +EPY+IQQGFIQRTPRGR+   +A+Q+L I++P 
Sbjct: 301 VEPYLIQQGFIQRTPRGRVATELAYQYLNIEVPD 334


>gi|310643558|ref|YP_003948316.1| holliday junction ATP-dependent DNA helicase ruvb [Paenibacillus
           polymyxa SC2]
 gi|309248508|gb|ADO58075.1| Holliday junction ATP-dependent DNA helicase ruvB [Paenibacillus
           polymyxa SC2]
          Length = 335

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 194/332 (58%), Positives = 245/332 (73%), Gaps = 2/332 (0%)

Query: 2   MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD + ++S N+  ED    L LRPR L E+ GQ +   NLKV+IEAAK R EALDHVL  
Sbjct: 1   MD-DRIISANLMMEDQTAELSLRPRYLNEYIGQNQVKENLKVYIEAAKMRKEALDHVLLY 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A ELGVN R+TSGP I + GDLAALLTNL++ DVLFIDEIHRL   
Sbjct: 60  GPPGLGKTTLANIIANELGVNLRTTSGPAIERPGDLAALLTNLQEGDVLFIDEIHRLHRT 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE++YPAMEDF LD+M+G+GPSARSV+++L  FTLI ATTR GLL+ PL+DRFG+  RL
Sbjct: 120 VEEVMYPAMEDFALDIMIGKGPSARSVRLDLPPFTLIGATTRAGLLSAPLRDRFGVISRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  ++L  IV R A +  + +  +AA EIA+RSRGTPRIA RLL+RVRDFA+VA    
Sbjct: 180 EFYTTDELAYIVSRNADIMEIEIVGDAAEEIALRSRGTPRIANRLLKRVRDFAQVAGDGI 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I  E+A  AL RL ID +G D++D + L  +  +F GGPVG++TI+A + E    IED+ 
Sbjct: 240 IHSELAAEALKRLQIDPLGLDEIDHKMLKAMIHSFRGGPVGLDTIAATIGEESQTIEDVY 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EPY++Q G +QRTPRGR + P A+ HLGI +P
Sbjct: 300 EPYLLQIGLLQRTPRGRTVTPAAYAHLGIPMP 331


>gi|157375171|ref|YP_001473771.1| Holliday junction DNA helicase B [Shewanella sediminis HAW-EB3]
 gi|189046051|sp|A8FUX0|RUVB_SHESH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|157317545|gb|ABV36643.1| Holliday junction DNA helicase RuvB [Shewanella sediminis HAW-EB3]
          Length = 338

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 195/338 (57%), Positives = 250/338 (73%), Gaps = 4/338 (1%)

Query: 1   MMDREGLLSRNVS----QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH 56
           M++ + L+         +++     +RP+ L+E+TGQ +  + LK+FI+AA+ R EALDH
Sbjct: 1   MIEADRLIHAEPQGPEERDEQIDRAMRPKLLDEYTGQDDTRAQLKIFIKAAQNRGEALDH 60

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHR 116
           +L  GPPGLGKTTLA +VA E+GVN +STSGPV+ KAGDLAALLTNLE  DVLFIDEIHR
Sbjct: 61  MLIYGPPGLGKTTLAMIVANEMGVNIKSTSGPVLEKAGDLAALLTNLEPGDVLFIDEIHR 120

Query: 117 LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
           LS +VEEILYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+ RFGI
Sbjct: 121 LSSVVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGALTSPLRARFGI 180

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
           P+RL FY  +DL +IV R A +  L + DE A E+A RSRGTPRIA RLLRRVRDFAEV 
Sbjct: 181 PLRLEFYNTKDLSSIVSRSANVLELPIDDEGAIELAKRSRGTPRIANRLLRRVRDFAEVK 240

Query: 237 HAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAI 296
           H   I + +AD AL  L ID  GFD +D + L  I   F GGPVG++ ++A + E R+ I
Sbjct: 241 HDGEINKAVADLALDMLDIDSEGFDYMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETI 300

Query: 297 EDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           ED++EP++IQQGFIQRTPRGR+    A++H  I  P +
Sbjct: 301 EDVLEPFLIQQGFIQRTPRGRIATDRAYRHFDIIQPEK 338


>gi|7443650|pir||JC5477 DNA-binding protein ruvB - Pseudomonas aeruginosa
          Length = 352

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 195/336 (58%), Positives = 247/336 (73%), Gaps = 2/336 (0%)

Query: 1   MMDREGLLSRNVSQE--DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M++ + L+S    +E  +     +RP  L ++ GQ      +++FI AA+ R EALDH L
Sbjct: 1   MIEPDRLISAVSGRERDEQLDRAIRPLKLADYIGQPSVREQMELFIHAARGRQEALDHTL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA ++A+E+GV+ +STSGPV+ + GDLAALLTNLE  DVLF+DEIHRLS
Sbjct: 61  IFGPPGLGKTTLANIIAQEMGVSIKSTSGPVLERPGDLAALLTNLEAGDVLFVDEIHRLS 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            IVEE+LYPAMEDFQLD+M+GEGP+ RS+K++L  FTL+ ATTR G+LTNPL+DRFGI  
Sbjct: 121 PIVEEVLYPAMEDFQLDIMIGEGPAVRSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQ 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           RL FY +EDL TIV R A + GL +  + A EIA R+RGTPRIA RLLRRVRDFAEV   
Sbjct: 181 RLEFYNVEDLATIVSRSAGILGLEIEPQGAAEIAKRARGTPRIANRLLRRVRDFAEVRGQ 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             ITR IAD AL  L +D+ GFD LD R L  +   F GGPVGI+ ++A LSE R  IED
Sbjct: 241 GDITRVIADKALNLLDVDERGFDHLDRRLLLTMIDKFDGGPVGIDNLAAALSEERHTIED 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           ++EPY+IQQG+I RTPRGR++   A+ H G++IP R
Sbjct: 301 VLEPYLIQQGYIMRTPRGRVVTRHAYLHFGLNIPKR 336


>gi|1183842|dbj|BAA11819.1| Holliday junction specific DNA helicase [Pseudomonas aeruginosa]
          Length = 352

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 195/336 (58%), Positives = 247/336 (73%), Gaps = 2/336 (0%)

Query: 1   MMDREGLLSRNVSQE--DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M++ + L+S    +E  +     +RP  L ++ GQ      +++FI AA+ R EALDH L
Sbjct: 1   MIEPDRLISAVSGRERDEQLDRAIRPLKLADYIGQPSVREQMELFIHAARGRQEALDHTL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA ++A+E+GV+ +STSGPV+ + GDLAALLTNLE  DVLF+DEIHRLS
Sbjct: 61  IFGPPGLGKTTLANIIAQEMGVSIKSTSGPVLERPGDLAALLTNLEAGDVLFVDEIHRLS 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            IVEE+LYPAMEDFQLD+M+GEGP+ RS+K++L  FTL+ ATTR G+LTNPL+DRFGI  
Sbjct: 121 PIVEEVLYPAMEDFQLDIMIGEGPAGRSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQ 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           RL FY +EDL TIV R A + GL +  + A EIA R+RGTPRIA RLLRRVRDFAEV   
Sbjct: 181 RLEFYNVEDLATIVSRSAGILGLEIEPQGAAEIAKRARGTPRIANRLLRRVRDFAEVRGQ 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             ITR IAD AL  L +D+ GFD LD R L  +   F GGPVGI+ ++A LSE R  IED
Sbjct: 241 GDITRVIADKALNLLDVDERGFDHLDRRLLLTMIDKFDGGPVGIDNLAAALSEERHTIED 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           ++EPY+IQQG+I RTPRGR++   A+ H G++IP R
Sbjct: 301 VLEPYLIQQGYIMRTPRGRVVTRHAYLHFGLNIPKR 336


>gi|308174475|ref|YP_003921180.1| Holliday junction DNA helicase, ATP-dependent component [Bacillus
           amyloliquefaciens DSM 7]
 gi|307607339|emb|CBI43710.1| Holliday junction DNA helicase, ATP-dependent component [Bacillus
           amyloliquefaciens DSM 7]
 gi|328554395|gb|AEB24887.1| Holliday junction DNA helicase RuvB [Bacillus amyloliquefaciens
           TA208]
 gi|328912800|gb|AEB64396.1| Holliday junction DNA helicase, ATP-dependent component [Bacillus
           amyloliquefaciens LL3]
          Length = 334

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 183/331 (55%), Positives = 235/331 (70%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD   + S   S E      LRP+ L ++ GQ +   NL+VFI+AAK R E LDHVL  G
Sbjct: 1   MDERLVSSEADSHESIIEQSLRPQNLAQYIGQQKVKENLRVFIDAAKMRQETLDHVLLYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA +VA E+GV  R+TSGP I + GDLAA+LT LE  DVLFIDEIHRL+  +
Sbjct: 61  PPGLGKTTLASIVANEMGVEMRTTSGPAIERPGDLAAILTALEPGDVLFIDEIHRLNRSI 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTRVGLLT PL+DRFG+  RL 
Sbjct: 121 EEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRVGLLTAPLRDRFGVLSRLE 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y  E+L  IV R A++  + + +  A EIA RSRGTPR+A RLLRRVRDFA+V     I
Sbjct: 181 YYTQEELTDIVSRTAEVFEVEIEEAPALEIARRSRGTPRVANRLLRRVRDFAQVLGDSRI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T EIA  AL RL +D +G D +D + L  +   F GGPVG++TISA + E    IED+ E
Sbjct: 241 TEEIAHDALERLQVDALGLDHIDHKLLMGMIEKFSGGPVGLDTISATIGEEPHTIEDVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           PY++Q GF+QRTPRGR++ P  ++H  ++ P
Sbjct: 301 PYLLQIGFLQRTPRGRVVTPAVYEHFRLEAP 331


>gi|312882587|ref|ZP_07742327.1| Holliday junction DNA helicase RuvB [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309369747|gb|EFP97259.1| Holliday junction DNA helicase RuvB [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 334

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 190/333 (57%), Positives = 249/333 (74%), Gaps = 3/333 (0%)

Query: 1   MMDREGLLSRNVS---QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M++ + L++ + +    ED     +RP+ L ++ GQ      +++FI+AA+ R+EALDH+
Sbjct: 1   MIEADRLIAPDNTVYKDEDVIDRAIRPKKLADYQGQDHVRDQMEIFIKAAQMRSEALDHL 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTLA +VA E+ VN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRL
Sbjct: 61  LIFGPPGLGKTTLANIVANEMEVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           S +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI 
Sbjct: 121 SPMVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIT 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            RL +Y+I DL+TIVQR A   GL++  E A E+A R+RGTPRIA RLLRRVRD+AEV  
Sbjct: 181 QRLEYYKISDLQTIVQRSADCLGLSMEAEGALEVARRARGTPRIANRLLRRVRDYAEVKG 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
              I  +IAD AL  L +D  GFD +D + L  I   F GGPVG++ ++A + E +D IE
Sbjct: 241 NGHICADIADKALNMLDVDAQGFDYMDRKLLLAIMEKFSGGPVGLDNMAAAIGEEKDTIE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           D++EPY+IQQG++QRTPRGR+    A+ H GI+
Sbjct: 301 DVLEPYLIQQGYLQRTPRGRIATDRAYLHFGIE 333


>gi|319409332|emb|CBI82976.1| Holliday junction DNA helicase RuvB [Bartonella schoenbuchensis R1]
          Length = 363

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 228/331 (68%), Positives = 273/331 (82%), Gaps = 1/331 (0%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           + + LL       D D   LRP+ L++F GQ  A +NLK+FIEAAKAR EALDHVLFVGP
Sbjct: 5   ESQRLLGAIPLPNDPD-RSLRPQVLDDFIGQEAARANLKIFIEAAKARQEALDHVLFVGP 63

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTL+Q++A+ELGVNFRSTSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRL+  +E
Sbjct: 64  PGLGKTTLSQIMAKELGVNFRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLNPAIE 123

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILYPAMED+QLDL++GEGP+ARSVKI L++FTL+AATTR+GLLT PL+DRFGIPIRL+F
Sbjct: 124 EILYPAMEDYQLDLIIGEGPAARSVKIELAKFTLVAATTRLGLLTTPLRDRFGIPIRLSF 183

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y IE+L+ IV+R A+L  + ++D+ A EIA R+RGTPRIAGRLLRRV DFA V  A+ I 
Sbjct: 184 YTIEELEYIVKRNARLFSVQISDDGAHEIACRARGTPRIAGRLLRRVCDFALVKGAEKID 243

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           R IAD AL RL +D +G D LD RYL +IA+ F GGPVGIETI+A LSEPRDAIED+IEP
Sbjct: 244 RFIADEALSRLEVDHLGLDPLDRRYLILIAQTFLGGPVGIETIAAALSEPRDAIEDIIEP 303

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           Y++QQGFIQRT RGR++   AW HLG+  P 
Sbjct: 304 YLLQQGFIQRTARGRIITEKAWAHLGLCPPE 334


>gi|121535580|ref|ZP_01667387.1| Holliday junction DNA helicase RuvB [Thermosinus carboxydivorans
           Nor1]
 gi|121305820|gb|EAX46755.1| Holliday junction DNA helicase RuvB [Thermosinus carboxydivorans
           Nor1]
          Length = 338

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 182/327 (55%), Positives = 235/327 (71%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
            E +++      D     LRPR L E+ GQ +   NL VFI+AA  R EALDHVL  GPP
Sbjct: 2   EERIIAGGKQDADDWQYSLRPRRLAEYIGQDQIKHNLTVFIQAAMTRGEALDHVLLYGPP 61

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++A ELGVN R TSGP I + GDLAALLTNL ++DVLFIDEIHRL   VEE
Sbjct: 62  GLGKTTLASIIANELGVNLRITSGPAIERPGDLAALLTNLGEKDVLFIDEIHRLPRSVEE 121

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILY AMED+ LD+++G+GPSARS++++L RFTL+ ATTR G L +PL+DRFG+  RL +Y
Sbjct: 122 ILYSAMEDYALDIIIGKGPSARSIRLDLPRFTLVGATTRAGALASPLRDRFGVICRLEYY 181

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           +++ L  IV+R A +  +A+  + A EIA RSRGTPR+A RLL+RVRDFA+V     IT 
Sbjct: 182 DVKQLVCIVKRAADILNIAIDAQGAEEIARRSRGTPRVANRLLKRVRDFAQVTGDGVITA 241

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
            +AD AL RL +D+ G D+ D   L +I   F GGPVG++T++A +SE  D +ED+ EP+
Sbjct: 242 ALADEALARLDVDQCGLDRTDRTLLRIIIEKFNGGPVGLDTLAAAISEETDTVEDVYEPF 301

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGID 330
           ++Q GFIQRTPRGR+  P A+ HLGI 
Sbjct: 302 LLQLGFIQRTPRGRVATPAAYHHLGIP 328


>gi|68248919|ref|YP_248031.1| Holliday junction DNA helicase RuvB [Haemophilus influenzae
           86-028NP]
 gi|145628661|ref|ZP_01784461.1| Holliday junction DNA helicase B [Haemophilus influenzae 22.1-21]
 gi|145631440|ref|ZP_01787210.1| Holliday junction DNA helicase RuvB [Haemophilus influenzae R3021]
 gi|145638775|ref|ZP_01794384.1| Holliday junction DNA helicase RuvB [Haemophilus influenzae PittII]
 gi|260582590|ref|ZP_05850380.1| Holliday junction DNA helicase RuvB [Haemophilus influenzae NT127]
 gi|81336670|sp|Q4QNM6|RUVB_HAEI8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|68057118|gb|AAX87371.1| holliday junction DNA helicase RuvB [Haemophilus influenzae
           86-028NP]
 gi|144979131|gb|EDJ88817.1| Holliday junction DNA helicase B [Haemophilus influenzae 22.1-21]
 gi|144982977|gb|EDJ90486.1| Holliday junction DNA helicase RuvB [Haemophilus influenzae R3021]
 gi|145272370|gb|EDK12278.1| Holliday junction DNA helicase RuvB [Haemophilus influenzae PittII]
 gi|260094401|gb|EEW78299.1| Holliday junction DNA helicase RuvB [Haemophilus influenzae NT127]
 gi|309750265|gb|ADO80249.1| Holliday junction resolvasome, ATPase subunit [Haemophilus
           influenzae R2866]
          Length = 335

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 183/331 (55%), Positives = 242/331 (73%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + ++S      ED     +RP+ L ++ GQ +    + +FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRIISGQAKVDEDVIDRAIRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            +EE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ ATTR G LT+PL+DRFGI  R
Sbjct: 121 AIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY +EDL +IV R A    L +  +AA E+A RSRGTPRIA RLLRRVRD+A+V +  
Sbjct: 181 LEFYSVEDLTSIVARSADCLNLELEQQAAFEVARRSRGTPRIANRLLRRVRDYADVRNGG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I+  +A  AL  L +D  GFD LD + L+ +   F GGPVG++ ++A + E RD IED+
Sbjct: 241 IISINVAKQALSMLDVDDAGFDYLDRKLLSAVIERFDGGPVGLDNLAAAIGEERDTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           +EPY+IQQGF+QRTPRGR+     ++H G+ 
Sbjct: 301 LEPYLIQQGFLQRTPRGRIATSQTYRHFGLQ 331


>gi|209695356|ref|YP_002263285.1| Holliday junction DNA helicase RuvB [Aliivibrio salmonicida
           LFI1238]
 gi|226698771|sp|B6EGJ4|RUVB_ALISL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|208009308|emb|CAQ79574.1| holliday junction ATP-dependent DNA helicase RuvB [Aliivibrio
           salmonicida LFI1238]
          Length = 337

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 189/337 (56%), Positives = 252/337 (74%), Gaps = 3/337 (0%)

Query: 1   MMDREGLLSRNVS---QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M++ + L++ +      E+     +RP+ LE++ GQ    S +++FI+AA+ R E LDH+
Sbjct: 1   MIEADRLIAADNPVFRDEEVIDRAIRPKKLEDYRGQDHVRSQMEIFIKAAQMRQEPLDHL 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTLA +VA E+GV+ R+TSGPV+ KAGDLAALLTNLE+ D+LFIDEIHRL
Sbjct: 61  LIFGPPGLGKTTLANIVANEMGVSIRTTSGPVLEKAGDLAALLTNLEENDILFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           S +VEEILYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI 
Sbjct: 121 SPVVEEILYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIV 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            RL +Y+++DL+ IVQR A    L++  E A E+A R+RGTPRIA RLLRRVRD+A+V  
Sbjct: 181 QRLEYYKVDDLQYIVQRSADCLNLSMESEGALEVARRARGTPRIANRLLRRVRDYADVMS 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
              I+ +IAD AL  L +D  GFD +D + L  I   F GGPVG++ ++A + E +D IE
Sbjct: 241 DSHISPDIADKALNMLDVDVCGFDYMDRKLLLAIMEKFNGGPVGLDNVAAAIGEEKDTIE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           D+IEPY+IQQG++QRTPRGR++   A+ H GID P +
Sbjct: 301 DVIEPYLIQQGYLQRTPRGRIVSDRAYLHFGIDRPDK 337


>gi|15641847|ref|NP_231479.1| Holliday junction DNA helicase RuvB [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121591339|ref|ZP_01678627.1| Holliday junction DNA helicase RuvB [Vibrio cholerae 2740-80]
 gi|153803758|ref|ZP_01958344.1| Holliday junction DNA helicase RuvB [Vibrio cholerae MZO-3]
 gi|153824053|ref|ZP_01976720.1| Holliday junction DNA helicase RuvB [Vibrio cholerae B33]
 gi|227081974|ref|YP_002810525.1| Holliday junction DNA helicase RuvB [Vibrio cholerae M66-2]
 gi|229508058|ref|ZP_04397563.1| holliday junction DNA helicase RuvB [Vibrio cholerae BX 330286]
 gi|229511703|ref|ZP_04401182.1| holliday junction DNA helicase RuvB [Vibrio cholerae B33]
 gi|229515225|ref|ZP_04404685.1| holliday junction DNA helicase RuvB [Vibrio cholerae TMA 21]
 gi|229518842|ref|ZP_04408285.1| holliday junction DNA helicase RuvB [Vibrio cholerae RC9]
 gi|229520305|ref|ZP_04409731.1| holliday junction DNA helicase RuvB [Vibrio cholerae TM 11079-80]
 gi|229523863|ref|ZP_04413268.1| holliday junction DNA helicase RuvB [Vibrio cholerae bv. albensis
           VL426]
 gi|229529132|ref|ZP_04418522.1| holliday junction DNA helicase RuvB [Vibrio cholerae 12129(1)]
 gi|229607619|ref|YP_002878267.1| Holliday junction DNA helicase RuvB [Vibrio cholerae MJ-1236]
 gi|254292160|ref|ZP_04962931.1| Holliday junction DNA helicase RuvB [Vibrio cholerae AM-19226]
 gi|254848931|ref|ZP_05238281.1| holliday junction ATP-dependent DNA helicase ruvB [Vibrio cholerae
           MO10]
 gi|255745395|ref|ZP_05419344.1| holliday junction DNA helicase RuvB [Vibrio cholera CIRS 101]
 gi|298498116|ref|ZP_07007923.1| Holliday junction DNA helicase RuvB [Vibrio cholerae MAK 757]
 gi|20140290|sp|Q9KR02|RUVB_VIBCH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|254767449|sp|C3LNE8|RUVB_VIBCM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|9656373|gb|AAF94993.1| Holliday junction DNA helicase RuvB [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121546803|gb|EAX56969.1| Holliday junction DNA helicase RuvB [Vibrio cholerae 2740-80]
 gi|124120706|gb|EAY39449.1| Holliday junction DNA helicase RuvB [Vibrio cholerae MZO-3]
 gi|126518425|gb|EAZ75648.1| Holliday junction DNA helicase RuvB [Vibrio cholerae B33]
 gi|150421923|gb|EDN13899.1| Holliday junction DNA helicase RuvB [Vibrio cholerae AM-19226]
 gi|227009862|gb|ACP06074.1| Holliday junction DNA helicase RuvB [Vibrio cholerae M66-2]
 gi|229332906|gb|EEN98392.1| holliday junction DNA helicase RuvB [Vibrio cholerae 12129(1)]
 gi|229337444|gb|EEO02461.1| holliday junction DNA helicase RuvB [Vibrio cholerae bv. albensis
           VL426]
 gi|229342671|gb|EEO07663.1| holliday junction DNA helicase RuvB [Vibrio cholerae TM 11079-80]
 gi|229343531|gb|EEO08506.1| holliday junction DNA helicase RuvB [Vibrio cholerae RC9]
 gi|229347930|gb|EEO12889.1| holliday junction DNA helicase RuvB [Vibrio cholerae TMA 21]
 gi|229351668|gb|EEO16609.1| holliday junction DNA helicase RuvB [Vibrio cholerae B33]
 gi|229355563|gb|EEO20484.1| holliday junction DNA helicase RuvB [Vibrio cholerae BX 330286]
 gi|229370274|gb|ACQ60697.1| holliday junction DNA helicase RuvB [Vibrio cholerae MJ-1236]
 gi|254844636|gb|EET23050.1| holliday junction ATP-dependent DNA helicase ruvB [Vibrio cholerae
           MO10]
 gi|255737225|gb|EET92621.1| holliday junction DNA helicase RuvB [Vibrio cholera CIRS 101]
 gi|297542449|gb|EFH78499.1| Holliday junction DNA helicase RuvB [Vibrio cholerae MAK 757]
          Length = 334

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 188/333 (56%), Positives = 247/333 (74%), Gaps = 3/333 (0%)

Query: 1   MMDREGLL---SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M++ + L+   S +   E+     +RP+ L ++ GQ      +++FI+AA+ R EALDH+
Sbjct: 1   MIEADRLIAPISNHFKDEEVIDRAIRPKKLADYQGQDHVRDQMEIFIQAAQMRQEALDHL 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRL
Sbjct: 61  LIFGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           S +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI 
Sbjct: 121 SPMVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIV 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            RL +Y++ DL+ IVQR A+  GL++  E A E+A R+RGTPRIA RLLRRVRD+AEV  
Sbjct: 181 QRLEYYKVADLQHIVQRSAQCLGLSMDSEGALEVARRARGTPRIANRLLRRVRDYAEVKG 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
              I  + AD AL  L +D  GFD +D + L  I   F GGPVGI+ ++A + E +D IE
Sbjct: 241 DGHICAQTADRALNMLDVDHQGFDYMDRKLLLAIMEKFSGGPVGIDNLAAAIGEEKDTIE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           D++EP++IQQG++QRTPRGR+    A+ H GI+
Sbjct: 301 DVLEPFLIQQGYLQRTPRGRIATDRAYLHFGIE 333


>gi|303249557|ref|ZP_07335764.1| hypothetical protein APP6_0959 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307251816|ref|ZP_07533718.1| Holliday junction ATP-dependent DNA helicase ruvB [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307262876|ref|ZP_07544500.1| Holliday junction ATP-dependent DNA helicase ruvB [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|302651631|gb|EFL81780.1| hypothetical protein APP6_0959 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306860723|gb|EFM92734.1| Holliday junction ATP-dependent DNA helicase ruvB [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306871781|gb|EFN03501.1| Holliday junction ATP-dependent DNA helicase ruvB [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 334

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 185/331 (55%), Positives = 246/331 (74%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + ++S +   +E+     +RP+ L ++ GQ      +++FI+AAK R EALDH+L 
Sbjct: 1   MIEADRIISASPKREEEIIDRAIRPKLLADYVGQPSVREQMEIFIKAAKLRDEALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPYDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            +EE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ ATTR G LT+PL+DRFGI  R
Sbjct: 121 AIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY ++DL +IV+R A    L ++ + A E+A RSRGTPRIA RLLRRVRD+A+V +  
Sbjct: 181 LEFYSVDDLTSIVKRSADCLNLNLSPDGAYEVARRSRGTPRIANRLLRRVRDYADVRNNG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT +IA  AL  L +D  GFD +D++ L  I   F GGPVG++ ++A + E RD IED+
Sbjct: 241 VITSDIAKQALAMLDVDSEGFDFMDIKLLQAIVERFDGGPVGLDNLAAAIGEERDTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           +EPY+IQQGF+QRTPRGR+     + HLGI 
Sbjct: 301 LEPYLIQQGFLQRTPRGRIATSRTYAHLGIA 331


>gi|257440215|ref|ZP_05615970.1| holliday junction DNA helicase RuvB [Faecalibacterium prausnitzii
           A2-165]
 gi|257197249|gb|EEU95533.1| holliday junction DNA helicase RuvB [Faecalibacterium prausnitzii
           A2-165]
          Length = 351

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 170/327 (51%), Positives = 233/327 (71%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           ++   ++  D + + LRP+ LE++ GQ +   NLK+++EAAK R E +DH+L  GPPGLG
Sbjct: 12  MMQPGLTAADNEENSLRPQHLEDYIGQDKVKQNLKIYLEAAKRRGEPMDHILLYGPPGLG 71

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTTLA ++A E+GV  R TSGP I K GDLAALLTNL++ DVLFIDEIHRLS  VEE+LY
Sbjct: 72  KTTLAGIIANEMGVQIRITSGPAIEKPGDLAALLTNLQEGDVLFIDEIHRLSRQVEEVLY 131

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           PA+ED+ LD+M+G+GPSA+S++INL RFTL+ ATTR G +T PL+DRFG+ ++L  Y  +
Sbjct: 132 PALEDYALDIMIGKGPSAQSIRINLPRFTLVGATTRAGQITGPLRDRFGVLLKLELYSPD 191

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +L  I+QR A +    +T E A E+A  SRGTPR+A R L+RVRDFA V     I R+++
Sbjct: 192 ELSRIIQRSAGILDQPITPEGAYELAKCSRGTPRVANRFLKRVRDFATVLGDGIIDRDVS 251

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
             +L R+ +D +G D+LD   L  I   + GGPVG+ET++A L E    +EDL EPY++Q
Sbjct: 252 LMSLKRMDVDALGLDELDRSLLRAIIEMYNGGPVGLETLAAALGEEAVTLEDLCEPYLMQ 311

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            GF+ RTPRGR    +A++HLG+  P 
Sbjct: 312 MGFLTRTPRGRCATRLAYEHLGLKAPE 338


>gi|301169021|emb|CBW28618.1| ATP-dependent DNA helicase, component of RuvABC resolvasome
           [Haemophilus influenzae 10810]
          Length = 335

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 183/331 (55%), Positives = 242/331 (73%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + ++S      ED     +RP+ L ++ GQ +    + +FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRIISSQAKIDEDVIDRAIRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            +EE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ ATTR G LT+PL+DRFGI  R
Sbjct: 121 AIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY +EDL +IV R A    L +  +AA E+A RSRGTPRIA RLLRRVRD+A+V +  
Sbjct: 181 LEFYSVEDLTSIVARSADCLNLELEQQAAFEVARRSRGTPRIANRLLRRVRDYADVRNGG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I+  +A  AL  L +D  GFD LD + L+ +   F GGPVG++ ++A + E RD IED+
Sbjct: 241 IISINVAKQALSMLDVDDAGFDYLDRKLLSAVIERFDGGPVGLDNLAAAIGEERDTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           +EPY+IQQGF+QRTPRGR+     ++H G+ 
Sbjct: 301 LEPYLIQQGFLQRTPRGRIATSQTYRHFGLQ 331


>gi|259417288|ref|ZP_05741207.1| holliday junction DNA helicase RuvB [Silicibacter sp. TrichCH4B]
 gi|259346194|gb|EEW58008.1| holliday junction DNA helicase RuvB [Silicibacter sp. TrichCH4B]
          Length = 339

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 221/333 (66%), Positives = 262/333 (78%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M+D +  L  +   ED D   LRP+ L EF GQ EA +NL+VFIE+A+ R EA+DH LF 
Sbjct: 1   MIDADPTLRPDPLPEDND-RALRPQGLGEFIGQAEARANLRVFIESARRRGEAMDHTLFH 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ+VARELGVNFR TSGPV+AKAGDLAA+LTNLE RDVLFIDEIHRL+  
Sbjct: 60  GPPGLGKTTLAQIVARELGVNFRMTSGPVLAKAGDLAAILTNLEARDVLFIDEIHRLNPA 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDF+LDL++GEGP+AR+V+I L  FTL+ ATTR+GLLT PL+DRFGIP RL
Sbjct: 120 VEEVLYPAMEDFELDLVIGEGPAARTVRIELQPFTLVGATTRMGLLTTPLRDRFGIPTRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY +++L  IV R A+  G    D  A EIA R+RGTPRIAGRLLRRV DFA V    T
Sbjct: 180 QFYTVDELFEIVSRNARKLGAPADDAGAREIARRARGTPRIAGRLLRRVVDFAVVEGDGT 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           ITRE+AD AL RL +DK+G D  D RYL ++A N+GGGPVGIET+SA LSE RDA+E++I
Sbjct: 240 ITRELADGALTRLGVDKLGLDGADRRYLRLVAENYGGGPVGIETMSAALSESRDALEEVI 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY++QQG IQRTPRGR+L   AWQHLGI  P 
Sbjct: 300 EPYLLQQGLIQRTPRGRMLAQKAWQHLGIAPPK 332


>gi|152996212|ref|YP_001341047.1| Holliday junction DNA helicase RuvB [Marinomonas sp. MWYL1]
 gi|189046036|sp|A6VXD3|RUVB_MARMS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|150837136|gb|ABR71112.1| Holliday junction DNA helicase RuvB [Marinomonas sp. MWYL1]
          Length = 337

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 177/333 (53%), Positives = 237/333 (71%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++++ ++S  +   D  +   +RP+ L E+ GQ      +++FI+AA+ R E LDH L 
Sbjct: 1   MIEQDRIISAELKGNDRQVDRAIRPQALAEYIGQPVVREQMEIFIQAARQRGEPLDHTLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++  E+G   R+TSGPV+ +AGDLAALLTNL + D+LFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIIGNEMGAEVRTTSGPVLERAGDLAALLTNLNEGDILFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            +EE+LYPAMED+QLD+M+GEGP+ARS+KI L  FTL+ ATTR GLLT+PL+DRFGI  R
Sbjct: 121 AIEEVLYPAMEDYQLDIMIGEGPAARSIKIELPPFTLVGATTRAGLLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++E L TIV R A   G+ +      E+A RSRGTPRIA RLLRRVRD A+V+   
Sbjct: 181 LEFYDVESLTTIVARSAGKMGVELDQSGCFEVARRSRGTPRIANRLLRRVRDVAQVSGEV 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            + +++A  AL  L++D  GFD LD R L  +   F G PVG++++SA L E +D IED+
Sbjct: 241 LVGQKVAQRALDMLSVDSQGFDHLDRRMLLTMIEKFDGRPVGLDSVSAALGEDKDTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           IEP++IQQGFI RTPRGR +   A++H    +P
Sbjct: 301 IEPFLIQQGFIIRTPRGRQVTKRAYEHFNYQLP 333


>gi|15602841|ref|NP_245913.1| Holliday junction DNA helicase B [Pasteurella multocida subsp.
           multocida str. Pm70]
 gi|13431840|sp|P57892|RUVB_PASMU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|12721302|gb|AAK03060.1| RuvB [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 335

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 189/331 (57%), Positives = 247/331 (74%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + ++S +    E+     +RP+ L ++ GQ   C  + +FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRIISTSAKGDEEYIDRAIRPKLLNDYVGQPHVCEQMAIFIQAAKLRQDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVAHEMGVNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            +EE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 AIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY +EDL +IV R A    L+++D A  EIA RSRGTPRIA RLLRRVRDFA+V HA 
Sbjct: 181 LEFYAVEDLTSIVARSANCLNLSISDTACYEIARRSRGTPRIANRLLRRVRDFADVRHAG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I+ E A AALL L +D  GFD LD + L  +   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 IISEESAKAALLMLDVDDAGFDYLDRKLLNAVIERFDGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           +EPY+IQQGF+QRTPRGR+     +++ G++
Sbjct: 301 LEPYLIQQGFLQRTPRGRMATSRTYRYFGLE 331


>gi|238786431|ref|ZP_04630351.1| Holliday junction DNA helicase RuvB [Yersinia bercovieri ATCC
           43970]
 gi|238712665|gb|EEQ04757.1| Holliday junction DNA helicase RuvB [Yersinia bercovieri ATCC
           43970]
          Length = 335

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 191/331 (57%), Positives = 246/331 (74%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S  V S E++    +RP+ L E+ GQ      +++FI+AA+ R +ALDHVL 
Sbjct: 2   MIEADRLISAGVISDEESIDRAIRPKLLAEYVGQPHVREQMEIFIQAARQRGDALDHVLI 61

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 62  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 121

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 122 VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 181

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IV R A+  GL +T E A ++A RSRGTPRI  RLLRRVRDFAEV    
Sbjct: 182 LEFYQVADLEHIVSRSARCMGLELTAEGAHQLARRSRGTPRITNRLLRRVRDFAEVRADG 241

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  ++A  AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED+
Sbjct: 242 AIDGDVAMKALDMLNVDAEGFDFMDRKLLLAVIDKFMGGPVGLDNLAAAIGEERETIEDV 301

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           +EPY+IQQGFIQRTPRGR+    A++H GI 
Sbjct: 302 LEPYLIQQGFIQRTPRGRIATNHAYKHFGIT 332


>gi|332290324|ref|YP_004421176.1| Holliday junction DNA helicase RuvB [Gallibacterium anatis UMN179]
 gi|330433220|gb|AEC18279.1| Holliday junction DNA helicase RuvB [Gallibacterium anatis UMN179]
          Length = 332

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 185/331 (55%), Positives = 244/331 (73%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + ++S    +E+  I   +RP+ L+++ GQ      + +FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRIISPTAKEEEEYIDRAIRPKLLQDYVGQPHVREQMDIFIKAAKMRNDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPYDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            +EE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ ATTR G LT+PL+DRFGI  R
Sbjct: 121 AIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY IEDL +IV R A    L + ++AA EIA RSRGTPRI  RLLRRVRD+A+V +  
Sbjct: 181 LEFYSIEDLTSIVVRSANCLSLQIDEQAAHEIARRSRGTPRIVNRLLRRVRDYADVKNDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I+ EIA  AL  L ID  GFD +D + L  I   F GGPVG++ ++A + E ++ IED+
Sbjct: 241 FISVEIAKLALTMLDIDSEGFDFMDRKLLMAIIERFDGGPVGLDNLAAAIGEEKETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           +EPY+IQQGF+QRTPRGR+     ++H G+ 
Sbjct: 301 LEPYLIQQGFLQRTPRGRIATLHTYRHFGVS 331


>gi|312114823|ref|YP_004012419.1| Holliday junction DNA helicase RuvB [Rhodomicrobium vannielii ATCC
           17100]
 gi|311219952|gb|ADP71320.1| Holliday junction DNA helicase RuvB [Rhodomicrobium vannielii ATCC
           17100]
          Length = 347

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 222/328 (67%), Positives = 268/328 (81%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            LL R    EDA    LRP+ L EF GQ +A +N+KVFI+AA+AR EALDHVLF GPPGL
Sbjct: 4   RLLDRERQDEDAGELSLRPQRLAEFIGQAQARANMKVFIDAARARGEALDHVLFAGPPGL 63

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLAQ+VARELGVNF+ TSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL+  VEEIL
Sbjct: 64  GKTTLAQIVARELGVNFKMTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLNPAVEEIL 123

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           YPAMEDFQLDL++GEGP+ARSV+I+L++FTL+ ATTR GLLT PL+DRFGIPIRLNFY  
Sbjct: 124 YPAMEDFQLDLIIGEGPAARSVRIDLAKFTLVGATTRTGLLTTPLRDRFGIPIRLNFYTD 183

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           ++L+ IV+RGA++  + +T + A E+A RSRGTPR+AGRLLRRVRDFA V     + R +
Sbjct: 184 DELEEIVRRGARVLHMTMTADGAREVARRSRGTPRVAGRLLRRVRDFAAVGGVDEVDRAV 243

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           ADAAL +L +D +G D +D RYL  I  N+GGGPVGIETI+A LSE +DAIE++IEPY++
Sbjct: 244 ADAALGKLEVDSLGLDAMDHRYLRCIGVNYGGGPVGIETIAAALSEGKDAIEEVIEPYLL 303

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           QQGFI RTPRGR+L   A++HLG+  P 
Sbjct: 304 QQGFIGRTPRGRVLTLKAFRHLGLAAPQ 331


>gi|149183131|ref|ZP_01861581.1| Holliday junction DNA helicase B [Bacillus sp. SG-1]
 gi|148849163|gb|EDL63363.1| Holliday junction DNA helicase B [Bacillus sp. SG-1]
          Length = 333

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 175/332 (52%), Positives = 237/332 (71%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M+   + S   + + +    LRP+TL ++ GQ +  SNL +FIEAA+ R E LDHVL  G
Sbjct: 1   MEERVVSSEAETSDHSFELSLRPQTLNQYIGQDKVKSNLGIFIEAARMRQETLDHVLLYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA V+A E+GVN R+TSGP I + GDLAA+LT+LE  DVLFIDEIHRL   +
Sbjct: 61  PPGLGKTTLAAVIANEMGVNLRTTSGPAIERPGDLAAILTSLEPGDVLFIDEIHRLPRSI 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMEDF LD+++G GPSARSV+++L  FTL+ ATTR G L+ PL+DRFG+  RL 
Sbjct: 121 EEVLYPAMEDFCLDIVIGNGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLCRLE 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y  + L+ IV R +++ G  +   A+ E+A RSRGTPRIA RLLRRVRDFA+V     I
Sbjct: 181 YYNEDQLREIVIRTSEILGTEIDGLASVELARRSRGTPRIANRLLRRVRDFAQVRGNGEI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T ++A  AL  L +DK+G D +D + L  I   F GGPVG++TI+A + E    IED+ E
Sbjct: 241 TSDLASHALELLQVDKLGLDHIDHKLLRGIIERFKGGPVGLDTIAASIGEESHTIEDVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           PY++Q GF+QRTPRGR++  + ++H  +++P+
Sbjct: 301 PYLLQIGFLQRTPRGRVVTSLVYEHFDLEVPN 332


>gi|212638556|ref|YP_002315076.1| Holliday junction resolvasome, helicase subunit RuvB [Anoxybacillus
           flavithermus WK1]
 gi|212560036|gb|ACJ33091.1| Holliday junction resolvasome, helicase subunit RuvB [Anoxybacillus
           flavithermus WK1]
          Length = 335

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 185/331 (55%), Positives = 241/331 (72%), Gaps = 2/331 (0%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           MM+ E L+S     +DA +   LRP+ L E+ GQ +   NL VFIEAAK R E LDHVL 
Sbjct: 1   MME-ERLISSAADYDDASLEYSLRPKQLREYIGQQKVKENLTVFIEAAKMRGETLDHVLL 59

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A E+GV  R+T+GP I + GDLAA+LT LE  DVLFIDEIHRL  
Sbjct: 60  YGPPGLGKTTLAAIIANEMGVQLRTTAGPAIERPGDLAAILTTLEPGDVLFIDEIHRLPR 119

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEE+LYPAMEDF LD+++G+GP+ARSV+++L  FTL+ ATTR G L+ PL+DRFG+  R
Sbjct: 120 AVEEVLYPAMEDFCLDIVIGKGPAARSVRLDLPPFTLVGATTRSGALSAPLRDRFGVLSR 179

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y  E+L  IV+R A +  + + +EAA EIA RSRGTPRIA RLLRRVRDFA+V    
Sbjct: 180 LEYYTSEELAHIVKRTAHIFAVQIEEEAAFEIARRSRGTPRIANRLLRRVRDFAQVRGDG 239

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           TIT  +A+ AL +L +D++G D LD + L  +   F GGPVG+ETI+A + E    IED+
Sbjct: 240 TITFLLANEALEQLQVDRLGLDHLDHKLLKSMMEKFRGGPVGLETIAATIGEEAQTIEDV 299

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
            EPY++Q GF+QRTPRGR++ P+A+ H G++
Sbjct: 300 YEPYLLQIGFLQRTPRGRIVTPLAYHHFGME 330


>gi|326318905|ref|YP_004236577.1| Holliday junction DNA helicase RuvB [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323375741|gb|ADX48010.1| Holliday junction DNA helicase RuvB [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 353

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 186/326 (57%), Positives = 237/326 (72%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           +    QE+A    LRP+ L+E+ GQ +A   L++FI AA+ R EALDHVL  GPPGLGKT
Sbjct: 20  APASPQEEALERALRPKLLQEYVGQAKAREQLEIFIGAARKREEALDHVLLFGPPGLGKT 79

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           TL+ ++A ELGVN R TSGPV+ K  DLAALLTNLE  DVLFIDEIHRLS +VEEILYPA
Sbjct: 80  TLSHIIAAELGVNLRQTSGPVLEKPKDLAALLTNLEKNDVLFIDEIHRLSPVVEEILYPA 139

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +ED+Q+D+M+GEGP+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  E+L
Sbjct: 140 LEDYQIDIMIGEGPAARSIKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTPEEL 199

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             IV R A L    +  + + EIA RSRGTPRIA RLLRRVRD+A+V     IT++IA  
Sbjct: 200 SRIVTRSAGLLNAPIDAQGSFEIARRSRGTPRIANRLLRRVRDYADVKGDGRITQDIAQR 259

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL  L +D  GFD +D + L  +   F GGPVG++ I+A + E    IED+IEPY+IQQG
Sbjct: 260 ALAMLDVDPQGFDVMDRKLLEAVVHRFDGGPVGLDNIAASIGEEPGTIEDVIEPYLIQQG 319

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIPHR 334
           ++QRTPRGR+    A++HLG+    +
Sbjct: 320 YLQRTPRGRIATLAAFRHLGVAPSRQ 345


>gi|152979456|ref|YP_001345085.1| Holliday junction DNA helicase B [Actinobacillus succinogenes 130Z]
 gi|171704336|sp|A6VQA3|RUVB_ACTSZ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|150841179|gb|ABR75150.1| Holliday junction DNA helicase RuvB [Actinobacillus succinogenes
           130Z]
          Length = 336

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 191/331 (57%), Positives = 252/331 (76%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSR-NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + ++S    S ++A    +RP+ L+++ GQ +  S +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRIISAIAKSDDEAVDRAIRPKLLQDYVGQPQVRSQMEIFIQAAKLRQDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            +EE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 AIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY IEDL +IV R A    L ++D+A+ E+A RSRGTPRIA RLLRRVRD+A+V +  
Sbjct: 181 LEFYSIEDLTSIVMRSAACLNLEISDDASHEVARRSRGTPRIANRLLRRVRDYADVKNNG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT+ IA AAL  L ID+ GFD LD + L+ I   F GGPVG++ ++A + E RD IED+
Sbjct: 241 MITQGIAKAALAMLDIDQAGFDYLDRKLLSSIIERFDGGPVGLDNLAAAIGEERDTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           +EPY+IQQGF+QRTPRGR+     ++H G+ 
Sbjct: 301 LEPYLIQQGFLQRTPRGRIATSQTYRHFGLA 331


>gi|85374912|ref|YP_458974.1| Holliday junction DNA helicase RuvB [Erythrobacter litoralis
           HTCC2594]
 gi|123099493|sp|Q2N814|RUVB_ERYLH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|84787995|gb|ABC64177.1| Holliday junction resolvasome helicase subunit [Erythrobacter
           litoralis HTCC2594]
          Length = 343

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 219/332 (65%), Positives = 260/332 (78%), Gaps = 1/332 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D   L + +   ED D++ LRP++L EF GQ  A  NL VFIEAA++R EA+DH LF 
Sbjct: 1   MTDPIPLHTPDRQPEDPDVA-LRPKSLAEFVGQAAAKDNLAVFIEAARSRGEAMDHTLFF 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++ARELGV FR+TSGPVIAKAGDLAALLTNLE  DVLFIDEIHRL+ +
Sbjct: 60  GPPGLGKTTLAQIIARELGVGFRATSGPVIAKAGDLAALLTNLEPHDVLFIDEIHRLNPV 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMED  LDL++GEGP+ARSV+I+L  FTLI ATTR GLLT PL+DRFGIP+RL
Sbjct: 120 VEEVLYPAMEDRALDLIIGEGPAARSVRIDLPPFTLIGATTRQGLLTTPLRDRFGIPVRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           NFY  E+L+ +V RGA L GLA+    A EIA RSRGTPR+AGRLLRRVRDFAEV  A T
Sbjct: 180 NFYTEEELEKVVTRGAGLMGLAIDAAGAREIARRSRGTPRVAGRLLRRVRDFAEVQKAGT 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +T  IADAAL RL +D +G D +D RYLTMIA  + GGPVG+ET++AGL+EPRD IED++
Sbjct: 240 VTSPIADAALTRLEVDGLGLDAMDRRYLTMIADIYKGGPVGVETLAAGLAEPRDTIEDVV 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EPY+IQ G + RT RGR L    W+HL    P
Sbjct: 300 EPYLIQLGLVARTARGRCLNDRGWEHLERQPP 331


>gi|56551054|ref|YP_161893.1| Holliday junction DNA helicase RuvB [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|241761368|ref|ZP_04759456.1| Holliday junction DNA helicase RuvB [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|260753283|ref|YP_003226176.1| Holliday junction DNA helicase RuvB [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|81820941|sp|Q5NR72|RUVB_ZYMMO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|56542628|gb|AAV88782.1| Holliday junction DNA helicase RuvB [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|241374275|gb|EER63772.1| Holliday junction DNA helicase RuvB [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|258552646|gb|ACV75592.1| Holliday junction DNA helicase RuvB [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 347

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 216/332 (65%), Positives = 262/332 (78%), Gaps = 1/332 (0%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M R  LL+      D D   LRPR+L+EF GQ  A  N++VFIEAAK R E+LDHVLF G
Sbjct: 1   MTRNSLLNPEAENADPD-QALRPRSLDEFIGQQAARENIRVFIEAAKKRQESLDHVLFFG 59

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLAQ++ARE+GV FR+TSGPVI K+GDLAALLTNLED DVLFIDEIHRL  +V
Sbjct: 60  PPGLGKTTLAQIIAREMGVGFRATSGPVIVKSGDLAALLTNLEDGDVLFIDEIHRLQPVV 119

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMED  LDLM+GEGPSARSV+I+L  FTL+ ATTR GLL+ PL+DRFGIP+RL 
Sbjct: 120 EEVLYPAMEDRALDLMIGEGPSARSVRIDLPHFTLVGATTRQGLLSTPLRDRFGIPVRLQ 179

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY IE+L+ ++ R A+L G+ +  E A EIA RSRGTPRIAGRLLRRVRDFA+VA +K +
Sbjct: 180 FYSIEELRQVITRAARLLGMEIAPEGAEEIAKRSRGTPRIAGRLLRRVRDFADVAGSKIV 239

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
            R IAD AL RL +DK+G D +D RYL MIA  + GGPVG++T++AGLSEPRD +E++IE
Sbjct: 240 DRFIADEALNRLEVDKLGLDLMDRRYLMMIADIYKGGPVGLDTLAAGLSEPRDTVEEVIE 299

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           PY+IQ G + RT RGR L  +AW+HLG+  P 
Sbjct: 300 PYLIQLGLVARTARGRQLNGLAWRHLGLTDPR 331


>gi|294626861|ref|ZP_06705453.1| Holliday junction DNA helicase RuvB [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294665406|ref|ZP_06730694.1| Holliday junction DNA helicase RuvB [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292598875|gb|EFF43020.1| Holliday junction DNA helicase RuvB [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292604817|gb|EFF48180.1| Holliday junction DNA helicase RuvB [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 346

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 193/333 (57%), Positives = 248/333 (74%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M ++  + S +  ++DA  + +RP+ L ++ GQ      ++++I+AAKAR EA+DHVL  
Sbjct: 1   MTEQRIIASSSTREDDAADASIRPKRLADYLGQQPVREQMEIYIQAAKARGEAMDHVLIF 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTL+ V+A ELGV+ R TSGPVI KAGDLAALLTNL+  DVLFIDEIHRLS +
Sbjct: 61  GPPGLGKTTLSHVIANELGVSLRVTSGPVIEKAGDLAALLTNLQPHDVLFIDEIHRLSPV 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDFQ+D+M+G+GP+ARS+KI+L  FTLI ATTR GLLT PL+DRFGI  RL
Sbjct: 121 VEEVLYPAMEDFQIDIMIGDGPAARSIKIDLPPFTLIGATTRAGLLTAPLRDRFGIVQRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  ++L  IV R A + G+  T E A EIA R+RGTPRIA RLLRRVRD+A+V  A  
Sbjct: 181 EFYSPQELTRIVIRSAAILGIDCTPEGAAEIARRARGTPRIANRLLRRVRDYAQVKAAGH 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I   +A AA+  L +D  GFD+LD R L  I  +F GGPVG+E+++A LSE R  +ED+I
Sbjct: 241 IDLPVAQAAMQMLKVDPEGFDELDRRMLRTIVEHFDGGPVGVESLAASLSEERGTLEDVI 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY+IQQGF+ RT RGR++ P A+ HLG+  P 
Sbjct: 301 EPYLIQQGFLIRTARGRMVTPKAYLHLGLKPPR 333


>gi|78048833|ref|YP_365008.1| Holliday junction DNA helicase RuvB [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|97190443|sp|Q3BQF5|RUVB_XANC5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|78037263|emb|CAJ25008.1| Holliday junction DNA helicase RuvB [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 346

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 193/333 (57%), Positives = 249/333 (74%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M ++  + S +  ++DA  + +RP+ L ++ GQ      ++++I+AAKAR EA+DHVL  
Sbjct: 1   MTEQRIIASSSTREDDAADASIRPKRLADYLGQQPVREQMEIYIQAAKARGEAMDHVLIF 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTL+ V+A ELGV+ R TSGPVI KAGDLAALLTNL+  DVLFIDEIHRLS +
Sbjct: 61  GPPGLGKTTLSHVIANELGVSLRVTSGPVIEKAGDLAALLTNLQPHDVLFIDEIHRLSPV 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDFQ+D+M+G+GP+ARS+KI+L  FTLI ATTR GLLT PL+DRFGI  RL
Sbjct: 121 VEEVLYPAMEDFQIDIMIGDGPAARSIKIDLPPFTLIGATTRAGLLTAPLRDRFGIVQRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  ++L  IV R A + G+  T E A EIA R+RGTPRIA RLLRRVRD+A+V  A  
Sbjct: 181 EFYSPQELTRIVSRSAAILGIDCTPEGAAEIARRARGTPRIANRLLRRVRDYAQVKAAGH 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I   +A AA+  L +D  GFD+LD R L  I  +F GGPVG+E+++A LSE R  +ED+I
Sbjct: 241 IDLPVAQAAMQMLKVDPEGFDELDRRMLRTIVEHFDGGPVGVESLAASLSEERGTLEDVI 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY+IQQGF+ RT RGR++ P A+ HLG+ +P 
Sbjct: 301 EPYLIQQGFLIRTARGRMVTPKAYLHLGLKVPR 333


>gi|297183448|gb|ADI19580.1| holliday junction resolvasome, helicase subunit [uncultured
           Acidobacteria bacterium HF0770_27F21]
          Length = 344

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 190/327 (58%), Positives = 240/327 (73%), Gaps = 1/327 (0%)

Query: 5   EGLLSRN-VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E L+S + VS+E      LRPRTLEE+ GQ +   NL+VFIEAA  R E LDHVL  GPP
Sbjct: 3   ERLVSPSPVSEESRFEVTLRPRTLEEYVGQRKVVDNLRVFIEAASKRNEPLDHVLLFGPP 62

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++A E+  + R+TSGPVI K GDLAA+LT++E+  VLFIDEIHRL   +EE
Sbjct: 63  GLGKTTLAYIIAHEMDGDLRATSGPVIEKIGDLAAILTSVEENGVLFIDEIHRLPASIEE 122

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LYPAMED+Q+D+++GEGPSARSVK+ + RFTL+ +TTR  LLT+PL+ RFGI  RLNFY
Sbjct: 123 LLYPAMEDYQIDIVIGEGPSARSVKLPIPRFTLVGSTTRAALLTSPLRSRFGIVFRLNFY 182

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
             EDL  IV   AK  G+    + A EIA RSRGTPRIA RLLRRVRDFAEV     I  
Sbjct: 183 TTEDLTKIVFNSAKKLGVPTDADGALEIASRSRGTPRIANRLLRRVRDFAEVDGDGMINA 242

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           ++A +AL +L +DKMGFD++D + +  I +NF GGPVG+ TI+A + E + AIED+ EPY
Sbjct: 243 DVARSALQKLEVDKMGFDEIDRQLMLTIMQNFSGGPVGLNTIAAAIGEDKAAIEDIYEPY 302

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGID 330
           +IQ GF+ RT RGR+   IA++H GI 
Sbjct: 303 LIQLGFLARTSRGRVATEIAYEHFGIQ 329


>gi|33594304|ref|NP_881948.1| Holliday junction DNA helicase B [Bordetella pertussis Tohama I]
 gi|44888430|sp|Q7VTT6|RUVB_BORPE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|33564379|emb|CAE43684.1| holliday junction DNA helicase [Bordetella pertussis Tohama I]
 gi|332383715|gb|AEE68562.1| Holliday junction DNA helicase RuvB [Bordetella pertussis CS]
          Length = 357

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 184/320 (57%), Positives = 232/320 (72%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
             E++    LRP+ LEE+ GQ  A   L++FI AA+ R EALDHVL  GPPGLGKTTLA 
Sbjct: 25  PNEESIERALRPKALEEYVGQQRAREQLEIFIAAARKRGEALDHVLLFGPPGLGKTTLAH 84

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++A E+GV  R TSGPV+ + GDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+EDF
Sbjct: 85  IIAHEMGVQLRQTSGPVLERPGDLAALLTNLERNDVLFIDEIHRLSPVVEEILYPALEDF 144

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           Q+D+++GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  ++L  IV
Sbjct: 145 QIDILIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYNTDELARIV 204

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R A L    +T + A E+A RSRGTPRIA RLLRRVRD+A+V     I ++ A  AL  
Sbjct: 205 TRSASLLNADITADGAHEVARRSRGTPRIANRLLRRVRDYAQVKSHGVIDQDAAGRALAM 264

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D  G D +D + L  I   F GGPVG+++++A + E RD IED+IEPY+IQ G++QR
Sbjct: 265 LDVDPQGLDVMDRKLLEAIVHKFDGGPVGVDSLAAAIGEERDTIEDVIEPYLIQHGYLQR 324

Query: 313 TPRGRLLMPIAWQHLGIDIP 332
           TPRGR      W+HLG+  P
Sbjct: 325 TPRGRTATLTTWRHLGLTPP 344


>gi|114321924|ref|YP_743607.1| Holliday junction DNA helicase RuvB [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|122310676|sp|Q0A4X0|RUVB_ALHEH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|114228318|gb|ABI58117.1| Holliday junction DNA helicase subunit RuvB [Alkalilimnicola
           ehrlichii MLHE-1]
          Length = 351

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 184/331 (55%), Positives = 242/331 (73%), Gaps = 1/331 (0%)

Query: 5   EGLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           + L++ + S ED A    +RPR L ++ GQ      +++F+ AA+ R EALDH L  GPP
Sbjct: 3   DRLITPDASGEDEAIDRAIRPRRLTDYIGQPVVREQMEIFVHAARGRGEALDHTLIFGPP 62

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++A E+GV+ R TSGPV+ K GDLAALLTNLE  DVLF+DEIHRLS +VEE
Sbjct: 63  GLGKTTLAHIIANEMGVSMRQTSGPVLDKPGDLAALLTNLEPHDVLFVDEIHRLSAVVEE 122

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LYPAMEDFQ+D+M+GEGP+ARS+K++L  FTL+ ATTR GLLT+PL+DRFGI  RL +Y
Sbjct: 123 VLYPAMEDFQIDIMIGEGPAARSIKLDLPPFTLVGATTRAGLLTSPLRDRFGIVQRLEYY 182

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            + DL  IV+R A L  L++ +    EIA R+RGTPRIA RLLRRVRD+AEV     I+ 
Sbjct: 183 NVADLSGIVKRSAHLLNLSIDETGCQEIAGRARGTPRIANRLLRRVRDYAEVRADGHISG 242

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           E+A AA+  L +D+ GFD+ D R L  I   F GGPVG+++I+A + E R  IED++EPY
Sbjct: 243 EVAHAAMELLNVDRNGFDEQDRRLLLAIMEKFDGGPVGLDSIAAAIGEERGTIEDVVEPY 302

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           +IQQG++ RTPRGR+    AW H G++ P +
Sbjct: 303 LIQQGYLMRTPRGRMATRNAWLHFGLNPPRQ 333


>gi|317402222|gb|EFV82811.1| Holliday junction ATP-dependent DNA helicase ruvB [Achromobacter
           xylosoxidans C54]
          Length = 357

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 186/323 (57%), Positives = 232/323 (71%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
                E++    LRP+ LEE+ GQ  A   L++FI AA+ R EALDHVL  GPPGLGKTT
Sbjct: 22  PASPNEESIERALRPKALEEYVGQQRAREQLEIFIAAARKRGEALDHVLLFGPPGLGKTT 81

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           LA ++A E+GV  R TSGPV+ + GDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+
Sbjct: 82  LAHIIAHEMGVQLRQTSGPVLERPGDLAALLTNLEKNDVLFIDEIHRLSPVVEEILYPAL 141

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           EDFQ+D+++GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY   DL 
Sbjct: 142 EDFQIDILIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYNAGDLG 201

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            IV R A L    +T + A E+A R+RGTPRIA RLLRRVRD+AEV    TI  ++A  A
Sbjct: 202 RIVTRSAGLLNAVITPDGAAEVARRARGTPRIANRLLRRVRDYAEVKAGGTIDADVAGRA 261

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           L  L +D  G D +D + L  I   F GGPVG+++++A + E RD IED+IEPY+IQ G+
Sbjct: 262 LAMLEVDPQGLDLMDRKLLEAIIHKFDGGPVGVDSLAAAIGEERDTIEDVIEPYLIQHGY 321

Query: 310 IQRTPRGRLLMPIAWQHLGIDIP 332
           +QRTPRGR      W+HLG+  P
Sbjct: 322 LQRTPRGRTATLTTWRHLGLTPP 344


>gi|240851224|ref|YP_002972627.1| Holliday junction DNA helicase RuvB [Bartonella grahamii as4aup]
 gi|240268347|gb|ACS51935.1| Holliday junction DNA helicase RuvB [Bartonella grahamii as4aup]
          Length = 364

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 229/330 (69%), Positives = 273/330 (82%), Gaps = 1/330 (0%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           + + LL       D D   LRP+ L++F GQ  A +NLK+FIEAAK R EALDHVLFVGP
Sbjct: 5   EDKRLLGSAPLPNDPD-RSLRPQVLDDFIGQEAARANLKIFIEAAKTRQEALDHVLFVGP 63

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTL+Q++A+ELGVNFRSTSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRL+  +E
Sbjct: 64  PGLGKTTLSQIMAKELGVNFRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLNPAIE 123

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILYPAMED+QLDL++GEGP+ARSVKI+L++FTL+AATTR+GLLT PL+DRFGIPIRLNF
Sbjct: 124 EILYPAMEDYQLDLIIGEGPAARSVKIDLAKFTLVAATTRLGLLTTPLRDRFGIPIRLNF 183

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y IE+L+ IVQR A+L  + ++D+ A EIA R+RGTPRIAGRLLRRV DFA V  AK I 
Sbjct: 184 YTIEELEYIVQRNARLFAVKISDDGAHEIARRARGTPRIAGRLLRRVCDFALVKQAKQID 243

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           ++IAD AL RL +D +G D LD RYL +IA  F GGPVGIETI+A LSEPRDAIED++EP
Sbjct: 244 QKIADEALSRLEVDHLGLDPLDRRYLLLIAETFLGGPVGIETIAAALSEPRDAIEDIVEP 303

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           Y++QQGFIQRT RGR+L   AW HLG+  P
Sbjct: 304 YLLQQGFIQRTARGRILTEKAWSHLGLSAP 333


>gi|154686914|ref|YP_001422075.1| Holliday junction DNA helicase RuvB [Bacillus amyloliquefaciens
           FZB42]
 gi|166231462|sp|A7Z768|RUVB_BACA2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|154352765|gb|ABS74844.1| RuvB [Bacillus amyloliquefaciens FZB42]
          Length = 334

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 184/333 (55%), Positives = 234/333 (70%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD   + S   S E      LRP+ L ++ GQ +   NL+VFI+AAK R E LDHVL  G
Sbjct: 1   MDERLVSSEADSHESIIEQSLRPQNLAQYIGQKKVKENLRVFIDAAKMRQETLDHVLLYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA +VA E+GV  R+TSGP I + GDLAA+LT LE  DVLFIDEIHRL+  +
Sbjct: 61  PPGLGKTTLASIVANEMGVEMRTTSGPAIERPGDLAAILTALEPGDVLFIDEIHRLNRSI 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTRVGLLT PL+DRFG+  RL 
Sbjct: 121 EEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRVGLLTAPLRDRFGVLSRLE 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y  E+L  IV R A +  + +    A EIA RSRGTPR+A RLLRRVRDFA+V     I
Sbjct: 181 YYTQEELTDIVSRTADVFEVDIEKAPALEIARRSRGTPRVANRLLRRVRDFAQVLGDSRI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T EIA  AL RL +D +G D +D + L  +   F GGPVG++TISA + E    IED+ E
Sbjct: 241 TEEIAHDALERLQVDALGLDHIDHKLLMGMIEKFSGGPVGLDTISATIGEEPHTIEDVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           PY++Q GF+QRTPRGR++ P  ++H  ++ P R
Sbjct: 301 PYLLQIGFLQRTPRGRVVTPAVYEHFRLEAPAR 333


>gi|313904086|ref|ZP_07837466.1| Holliday junction DNA helicase RuvB [Eubacterium cellulosolvens 6]
 gi|313471235|gb|EFR66557.1| Holliday junction DNA helicase RuvB [Eubacterium cellulosolvens 6]
          Length = 330

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 172/331 (51%), Positives = 239/331 (72%), Gaps = 2/331 (0%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M+R  ++   V QED  +   LRP+TL+E+ GQ +A +NL+V+I+AAK R + LDHVLF 
Sbjct: 1   MER-RIIQTEVQQEDEPVEKSLRPQTLDEYIGQEKAKNNLRVYIQAAKQRGDVLDHVLFY 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A E+G + + TSGP I K G++AA+L NL++ DVLF+DEIHRL+  
Sbjct: 60  GPPGLGKTTLAGIIANEMGTHMKVTSGPAIEKPGEMAAILNNLQEGDVLFVDEIHRLNRQ 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMED+ +D+M+G+G SARS+++ L +FTL+ ATTR GLLT PL+DRFG+   +
Sbjct: 120 VEEVLYPAMEDYAIDIMIGKGASARSIRLELPKFTLVGATTRAGLLTAPLRDRFGVIEHM 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  E+L  IV+  A++  + +  + A E+A RSRGTPR++ RLLRRVRDFA V +   
Sbjct: 180 EFYTTEELTEIVEHSARVLDVEIDRDGAVEMARRSRGTPRLSNRLLRRVRDFAMVQYDGR 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           ITRE+A  AL  L +DK G DQ D R L  I   F GGPVG++T++A + +    IED+ 
Sbjct: 240 ITREVARTALDLLQVDKFGLDQTDRRILLTIIEKFQGGPVGLDTLAAAIGDDSGTIEDVY 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           EPY+I+ GFI RT  GR+   +A++HLG+ +
Sbjct: 300 EPYLIKNGFINRTHSGRVATELAYRHLGLQM 330


>gi|238026245|ref|YP_002910476.1| Holliday junction DNA helicase RuvB [Burkholderia glumae BGR1]
 gi|237875439|gb|ACR27772.1| Holliday junction DNA helicase RuvB [Burkholderia glumae BGR1]
          Length = 355

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 196/331 (59%), Positives = 245/331 (74%), Gaps = 2/331 (0%)

Query: 5   EGLL--SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           E ++  +   S E+A    LRPR L+E+ GQ +    L++FIEAAK RAEALDHVL  GP
Sbjct: 10  ERIIAATPASSHEEAFERALRPRQLDEYVGQEKVRGQLEIFIEAAKRRAEALDHVLLFGP 69

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA +VARE+GVN R TSGPV+ + GDLAALLTNLE  DVLFIDEIHRLS +VE
Sbjct: 70  PGLGKTTLAHIVAREMGVNLRQTSGPVLERPGDLAALLTNLEANDVLFIDEIHRLSPVVE 129

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILYPA+ED+Q+D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL F
Sbjct: 130 EILYPALEDYQIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEF 189

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y+   L  IVQR A L    +    A EIA R+RGTPRIA RLLRRVRD+AEV     IT
Sbjct: 190 YDASQLSRIVQRSASLLNARIDPHGALEIARRARGTPRIANRLLRRVRDYAEVKADGEIT 249

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             +ADAAL  L +D +GFD +D + L  I   F GGPVG++ ++A + E RD IED++EP
Sbjct: 250 ERVADAALAMLDVDPVGFDLMDRKLLEAILHKFDGGPVGVDNLAAAIGEERDTIEDVLEP 309

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           Y+IQQGF+QRTPRGR+   + ++H G+ +P 
Sbjct: 310 YLIQQGFLQRTPRGRVATLLTYRHFGLPVPD 340


>gi|167586147|ref|ZP_02378535.1| Holliday junction DNA helicase RuvB [Burkholderia ubonensis Bu]
          Length = 355

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 195/331 (58%), Positives = 244/331 (73%), Gaps = 2/331 (0%)

Query: 5   EGLL--SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           E ++  +   S E+     LRPR L+E+ GQ +    L++FIEAAK R+E LDHVL  GP
Sbjct: 10  ERIIAATPASSHEEVFERALRPRQLDEYVGQEKVRGQLEIFIEAAKRRSEPLDHVLLFGP 69

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++ARE+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VE
Sbjct: 70  PGLGKTTLAHIIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVE 129

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILYPA+ED+Q+D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL F
Sbjct: 130 EILYPALEDYQIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEF 189

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y+ E L  IV+R A L    +    A EIA RSRGTPRIA RLLRRVRD+AEV     IT
Sbjct: 190 YDAEQLSRIVRRSASLLNAQIDPSGALEIAKRSRGTPRIANRLLRRVRDYAEVKADGNIT 249

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             +ADAAL  L +D +GFD +D + L  I   F GGPVGI+ ++A + E RD IED++EP
Sbjct: 250 AAVADAALAMLDVDPVGFDLMDRKLLEAILYKFDGGPVGIDNLAAAIGEERDTIEDVLEP 309

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           Y+IQQGF+QRTPRGR+   + ++H G+  P 
Sbjct: 310 YLIQQGFLQRTPRGRVATLLTYRHFGLAAPD 340


>gi|254490163|ref|ZP_05103354.1| Holliday junction DNA helicase RuvB [Methylophaga thiooxidans
           DMS010]
 gi|224464649|gb|EEF80907.1| Holliday junction DNA helicase RuvB [Methylophaga thiooxydans
           DMS010]
          Length = 337

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 181/331 (54%), Positives = 236/331 (71%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M+   +  ++ + E+     +RP TL+++ GQ      +++F+ AA+ R+EALDH L  G
Sbjct: 1   MEERFITPQSTNDEERIDRAIRPITLDDYIGQPVVREQMELFVSAARKRSEALDHTLIFG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+GVN + TSGPV+ + GDLAALLTNLE  DVLF+DEIHRLS +V
Sbjct: 61  PPGLGKTTLANIIANEMGVNLKQTSGPVLERPGDLAALLTNLEPNDVLFVDEIHRLSPVV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMED+Q+D+M+GEGP+ARS+K++L  FTL+ ATTR G LT+PL+DRFGI  RL 
Sbjct: 121 EEVLYPAMEDYQIDIMIGEGPAARSIKLDLEPFTLVGATTRAGSLTSPLRDRFGIVQRLE 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY   DL TIVQR A +  + +    A EIA RSRGTPRIA RLLRRVRD+AEV     +
Sbjct: 181 FYNTADLSTIVQRSAGILNVKLEQGGANEIARRSRGTPRIANRLLRRVRDYAEVKFDGEV 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           + EIA  AL  L +D  GFD LD + L  I   F GGPVG++ ++A + E R  IED+IE
Sbjct: 241 SAEIARQALDLLDVDNYGFDMLDRKLLLSIIEKFEGGPVGLDNLAAAIGEERGTIEDVIE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           P++IQ+GFI RTPRGR+    AW HLG+   
Sbjct: 301 PFLIQEGFIMRTPRGRVATKRAWIHLGLSPD 331


>gi|149191832|ref|ZP_01870069.1| Holliday junction DNA helicase B [Vibrio shilonii AK1]
 gi|148834350|gb|EDL51350.1| Holliday junction DNA helicase B [Vibrio shilonii AK1]
          Length = 335

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 192/333 (57%), Positives = 245/333 (73%), Gaps = 3/333 (0%)

Query: 1   MMDREGLLSRN---VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M++ + L++        ED     +RP+ L ++ GQ      +++FI+AA+ R EALDH+
Sbjct: 1   MIEADRLIAPENPVFKDEDVIDRAIRPKKLADYEGQEHVSDQMEIFIKAAQLRNEALDHL 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTLA +VA E+ VN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRL
Sbjct: 61  LIFGPPGLGKTTLANIVANEMEVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           S +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI 
Sbjct: 121 SPMVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIV 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            RL +Y+I DL+ IVQR A   GL++  E A EIA R+RGTPRIA RLLRRVRD+AEV  
Sbjct: 181 QRLEYYKIADLQKIVQRSASCLGLSMEPEGALEIARRARGTPRIANRLLRRVRDYAEVKG 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
              I  +IAD AL  L +D  GFD +D + L  I   F GGPVG++ ++A + E +D IE
Sbjct: 241 NGHICADIADKALNMLDVDHQGFDYMDRKLLLAIMEKFAGGPVGLDNLAAAIGEEKDTIE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           D+IEPY+IQQG++QRTPRGR+    A+ H GID
Sbjct: 301 DVIEPYLIQQGYLQRTPRGRIASDRAYLHFGID 333


>gi|146283143|ref|YP_001173296.1| Holliday junction DNA helicase RuvB [Pseudomonas stutzeri A1501]
 gi|166231542|sp|A4VNA3|RUVB_PSEU5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|145571348|gb|ABP80454.1| Holliday junction DNA helicase RuvB [Pseudomonas stutzeri A1501]
 gi|327481496|gb|AEA84806.1| Holliday junction DNA helicase RuvB [Pseudomonas stutzeri DSM 4166]
          Length = 350

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 192/335 (57%), Positives = 247/335 (73%), Gaps = 1/335 (0%)

Query: 1   MMDREGLLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + +++ +   +++     +RP  L E+ GQ      + +FI AAK R EALDH L 
Sbjct: 1   MIEADRIVTASSRDRDEQLDRAIRPLKLAEYIGQPVVREQMDLFIRAAKGRQEALDHTLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A E+GV+ +STSGPV+ + GDLAALLTNLE  DVLF+DEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIIAEEMGVSIKSTSGPVLERPGDLAALLTNLEAGDVLFVDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           IVEE+LYPAMEDFQLD+M+GEGP+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  R
Sbjct: 121 IVEEVLYPAMEDFQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY  EDL TIV+R A + GL    E A EIA R+RGTPRIA RLLRRVRDFA+V    
Sbjct: 181 LEFYSTEDLATIVRRSAGILGLPTEPEGAFEIARRARGTPRIANRLLRRVRDFAQVRGKG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            ITR+IAD AL  L +D+ GFD  D R L  +   F GGPVGI++++A +SE R  IED+
Sbjct: 241 EITRQIADLALNMLDVDERGFDHQDRRLLLTLIEKFDGGPVGIDSLAAAISEERHTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           +EPY+IQQG+I RTPRGR++   A+ H G+++P R
Sbjct: 301 LEPYLIQQGYIMRTPRGRVVTRHAYLHFGLNLPKR 335


>gi|297579364|ref|ZP_06941292.1| Holliday junction DNA helicase RuvB [Vibrio cholerae RC385]
 gi|297536958|gb|EFH75791.1| Holliday junction DNA helicase RuvB [Vibrio cholerae RC385]
          Length = 334

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 188/333 (56%), Positives = 246/333 (73%), Gaps = 3/333 (0%)

Query: 1   MMDREGLL---SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M++ + L+   S +   E+     +RP+ L ++ GQ      +++FI+AA  R EALDH+
Sbjct: 1   MIEADRLIAPISNHFKDEEVIDRAIRPKKLADYQGQDHVRDQMEIFIQAAHMRQEALDHL 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRL
Sbjct: 61  LIFGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           S +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI 
Sbjct: 121 SPMVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIV 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            RL +Y++ DL+ IVQR A+  GL++  E A E+A R+RGTPRIA RLLRRVRD+AEV  
Sbjct: 181 QRLEYYKVADLQHIVQRSAQCLGLSMDSEGALEVARRARGTPRIANRLLRRVRDYAEVKG 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
              I  + AD AL  L +D  GFD +D + L  I   F GGPVGI+ ++A + E +D IE
Sbjct: 241 DGHICAQTADRALNMLDVDHQGFDYMDRKLLLAIMEKFSGGPVGIDNLAAAIGEEKDTIE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           D++EP++IQQG++QRTPRGR+    A+ H GI+
Sbjct: 301 DVLEPFLIQQGYLQRTPRGRIATDRAYLHFGIE 333


>gi|229592300|ref|YP_002874419.1| Holliday junction DNA helicase RuvB [Pseudomonas fluorescens SBW25]
 gi|259495674|sp|C3JYS7|RUVB_PSEFS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|229364166|emb|CAY51819.1| holliday junction DNA helicase [Pseudomonas fluorescens SBW25]
          Length = 352

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 190/336 (56%), Positives = 249/336 (74%), Gaps = 2/336 (0%)

Query: 1   MMDREGLLSRN--VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M++ + L++      +E+     +RP +L ++ GQ      +++FI+AA+ R+E+LDH L
Sbjct: 1   MIEADRLIAATGPRDREEVQDRAIRPLSLADYIGQPTVREQMELFIQAARGRSESLDHTL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA ++A+E+GV+ +STSGPV+ + GDLAALLTNLE  DVLFIDEIHRLS
Sbjct: 61  IFGPPGLGKTTLANIIAQEMGVSIKSTSGPVLERPGDLAALLTNLEPHDVLFIDEIHRLS 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            IVEE+LYPAMEDFQLD+M+GEGP+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  
Sbjct: 121 PIVEEVLYPAMEDFQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQ 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           RL FY   DL TIV R A + GL +  E A EIA R+RGTPRIA RLLRRVRDFAEV   
Sbjct: 181 RLEFYSTADLATIVSRSAGILGLPLDPEGAFEIARRARGTPRIANRLLRRVRDFAEVRAK 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             IT+ +AD AL  L +D+ GFD  D R L  +   F GGPVG+++++A +SE R  IED
Sbjct: 241 GHITKAVADLALNLLDVDEHGFDHQDRRLLLTMIEKFDGGPVGVDSLAAAISEERHTIED 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           ++EPY+IQQG+I RTPRGR++   A+ H G++IP R
Sbjct: 301 VLEPYLIQQGYIMRTPRGRVVTRHAYLHFGLNIPSR 336


>gi|33598087|ref|NP_885730.1| Holliday junction DNA helicase B [Bordetella parapertussis 12822]
 gi|44888434|sp|Q7W4T6|RUVB_BORPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|33566645|emb|CAE38855.1| holliday junction DNA helicase [Bordetella parapertussis]
          Length = 357

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 184/320 (57%), Positives = 233/320 (72%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
             E++    LRP+ LEE+ GQ  A   L++FI AA+ R EALDHVL  GPPGLGKTTLA 
Sbjct: 25  PNEESIERALRPKALEEYVGQQRAREQLEIFIAAARKRGEALDHVLLFGPPGLGKTTLAH 84

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++A E+GV  R TSGPV+ + GDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+EDF
Sbjct: 85  IIAHEMGVQLRQTSGPVLERPGDLAALLTNLERNDVLFIDEIHRLSPVVEEILYPALEDF 144

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           Q+D+++GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  ++L  IV
Sbjct: 145 QIDILIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYNTDELARIV 204

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R A L    +T + A E+A RSRGTPRIA RLLRRVRD+A+V     I ++ A  AL  
Sbjct: 205 TRSASLLNADITADGAHEVARRSRGTPRIANRLLRRVRDYAQVKAHGVIDQDAAGRALAM 264

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D  G D +D + L  I   F GGPVG+++++A + E RD IED+IEPY+IQ G++QR
Sbjct: 265 LDVDPQGLDVMDRKLLEAIVHKFDGGPVGVDSLAAAIGEERDTIEDVIEPYLIQHGYLQR 324

Query: 313 TPRGRLLMPIAWQHLGIDIP 332
           TPRGR      W+HLG++ P
Sbjct: 325 TPRGRTATLTTWRHLGLNPP 344


>gi|109899251|ref|YP_662506.1| Holliday junction DNA helicase B [Pseudoalteromonas atlantica T6c]
 gi|123064361|sp|Q15RN6|RUVB_PSEA6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|109701532|gb|ABG41452.1| Holliday junction DNA helicase RuvB [Pseudoalteromonas atlantica
           T6c]
          Length = 335

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 192/332 (57%), Positives = 249/332 (75%), Gaps = 1/332 (0%)

Query: 1   MMDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+     +ED  I   +RP+ L ++TGQ   C  + +FI+AA+ R++ALDH+L 
Sbjct: 1   MIEADRLIQPTALREDEVIDRAIRPKMLADYTGQDHVCEQMDIFIQAARKRSDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GV+ ++TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVSIKTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPAMED+QLD+M+GEGP+ARS+K+ L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKLELPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY I+DL  IV+R A    L + +E A EIA RSRGTPRI+ RLLRRVRD+AE+    
Sbjct: 181 LEFYNIKDLTQIVKRSAHFLELNLDEEGAMEIAKRSRGTPRISNRLLRRVRDYAEIKANG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I+ ++A AAL  L +DK GFD +D + LT I   F GGPVG++ ++A + E RD IED+
Sbjct: 241 EISSDVASAALDMLDVDKEGFDYMDRKLLTTIIDKFMGGPVGLDNLAAAIGEERDTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           IEP++IQQGF+QRTPRGR++   A+ H G D 
Sbjct: 301 IEPFLIQQGFLQRTPRGRIVSQRAYLHFGYDY 332


>gi|52081252|ref|YP_080043.1| Holliday junction DNA helicase RuvB [Bacillus licheniformis ATCC
           14580]
 gi|52786632|ref|YP_092461.1| Holliday junction DNA helicase RuvB [Bacillus licheniformis ATCC
           14580]
 gi|319644781|ref|ZP_07999014.1| Holliday junction DNA helicase ruvB [Bacillus sp. BT1B_CT2]
 gi|59800222|sp|Q65GP6|RUVB_BACLD RecName: Full=Holliday junction DNA helicase ruvB
 gi|52004463|gb|AAU24405.1| Holliday junction DNA helicase [Bacillus licheniformis ATCC 14580]
 gi|52349134|gb|AAU41768.1| RuvB [Bacillus licheniformis ATCC 14580]
 gi|317392590|gb|EFV73384.1| Holliday junction DNA helicase ruvB [Bacillus sp. BT1B_CT2]
          Length = 334

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 189/332 (56%), Positives = 240/332 (72%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD   + S   + E A    LRP+ L ++ GQ +   NLKVFIEAAK R E LDHVL  G
Sbjct: 1   MDERLVSSELDNHESAIEQSLRPQRLAQYIGQEKVKDNLKVFIEAAKMREETLDHVLLYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+GVN R+TSGP I + GDLAA+LT LE  DVLFIDEIHRL   +
Sbjct: 61  PPGLGKTTLAAIIANEMGVNLRTTSGPAIERPGDLAAILTALEPGDVLFIDEIHRLHRSI 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTRVGLLT PL+DRFG+  RL 
Sbjct: 121 EEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRVGLLTAPLRDRFGVLSRLE 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y  ++L  IV R A+L  + +   +A EIA RSRGTPRIA RLLRRVRDFA+V    +I
Sbjct: 181 YYTRDELSEIVIRTAELFEVDIDSLSALEIARRSRGTPRIANRLLRRVRDFAQVLGNSSI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T E+A  AL RL +DK+G D +D + L  +   FGGGPVGI+TISA + E    IED+ E
Sbjct: 241 TEEVAVDALERLQVDKLGLDHIDRKLLMGMIEKFGGGPVGIDTISATIGEESHTIEDVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           PY++Q GFIQRTPRGR++ P  + H  +++P+
Sbjct: 301 PYLLQIGFIQRTPRGRIVTPDVYSHFKMEVPN 332


>gi|33602980|ref|NP_890540.1| Holliday junction DNA helicase B [Bordetella bronchiseptica RB50]
 gi|44888437|sp|Q7WGB3|RUVB_BORBR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|33568611|emb|CAE34369.1| holliday junction DNA helicase [Bordetella bronchiseptica RB50]
          Length = 357

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 184/320 (57%), Positives = 232/320 (72%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
             E++    LRP+ LEE+ GQ  A   L++FI AA+ R EALDHVL  GPPGLGKTTLA 
Sbjct: 25  PNEESIERALRPKALEEYVGQQRAREQLEIFIAAARKRGEALDHVLLFGPPGLGKTTLAH 84

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++A E+GV  R TSGPV+ + GDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+EDF
Sbjct: 85  IIAHEMGVQLRQTSGPVLERPGDLAALLTNLERNDVLFIDEIHRLSPVVEEILYPALEDF 144

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           Q+D+++GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  ++L  IV
Sbjct: 145 QIDILIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYNTDELARIV 204

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R A L    +T + A E+A RSRGTPRIA RLLRRVRD+A+V     I ++ A  AL  
Sbjct: 205 TRSASLLNADITADGAHEVARRSRGTPRIANRLLRRVRDYAQVKAHGVIDQDAAGRALAM 264

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D  G D +D + L  I   F GGPVG+++++A + E RD IED+IEPY+IQ G++QR
Sbjct: 265 LDVDPQGLDVMDRKLLEAIVHKFDGGPVGVDSLAAAIGEERDTIEDVIEPYLIQHGYLQR 324

Query: 313 TPRGRLLMPIAWQHLGIDIP 332
           TPRGR      W+HLG+  P
Sbjct: 325 TPRGRTATLTTWRHLGLTPP 344


>gi|87118956|ref|ZP_01074854.1| Holliday junction DNA helicase RuvB [Marinomonas sp. MED121]
 gi|86165347|gb|EAQ66614.1| Holliday junction DNA helicase RuvB [Marinomonas sp. MED121]
          Length = 342

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 182/339 (53%), Positives = 240/339 (70%), Gaps = 6/339 (1%)

Query: 1   MMDREGLLSRNVSQ------EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEAL 54
           M++ + ++S   +       E      +RP+ L+E+ GQ      + +FI+AA+ R E L
Sbjct: 1   MIESDRIISAESNDTELTGSEAHIDRAIRPKMLDEYVGQPVVREQMDIFIQAARQREEPL 60

Query: 55  DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEI 114
           DH L  GPPGLGKTTLA ++A E+GV  ++TSGPV+ +AGDLAALLTNL + DVLFIDEI
Sbjct: 61  DHCLIFGPPGLGKTTLANIIANEMGVEIKTTSGPVLERAGDLAALLTNLSEGDVLFIDEI 120

Query: 115 HRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRF 174
           HRLS  +EE+LYPAMED+QLD+M+GEGP+ARS+KI L  FTL+ ATTR GLLT+PL+DRF
Sbjct: 121 HRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKIELPAFTLVGATTRAGLLTSPLRDRF 180

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
           GI  RL FY++E L TIV R A+  GL +    + EIA R+RGTPRIA RLLRRVRD A+
Sbjct: 181 GIVQRLEFYDVESLTTIVSRSAQKMGLNMDPSGSFEIARRARGTPRIANRLLRRVRDVAQ 240

Query: 235 VAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRD 294
           V   + + +E+A  AL  L++D  GFD LD R L  +   F G PVGI++ISA + E +D
Sbjct: 241 VGGHEIVVQEVAQRALDMLSVDTQGFDHLDRRMLLTMIEKFDGRPVGIDSISAAVGEDKD 300

Query: 295 AIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            IED+IEPY+IQQGF+ RTPRGR +   A++H    +P+
Sbjct: 301 TIEDVIEPYLIQQGFVMRTPRGRQVTKKAYEHFNYQLPN 339


>gi|254787340|ref|YP_003074769.1| Holliday junction DNA helicase RuvB [Teredinibacter turnerae T7901]
 gi|259495679|sp|C5BQT4|RUVB_TERTT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|237683928|gb|ACR11192.1| Holliday junction DNA helicase RuvB [Teredinibacter turnerae T7901]
          Length = 347

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 191/334 (57%), Positives = 250/334 (74%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M+D++ ++  + S +ED     +RP+ L E+ GQ      +++FI AA+ R EALDH L 
Sbjct: 1   MIDQDRIVDGHASGREDQLDRAVRPKRLAEYIGQPAVREQMEIFIGAARLREEALDHTLV 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A E+G + ++TSGPV+ KAGDLAAL+TNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIIATEMGGDLKTTSGPVLDKAGDLAALMTNLEAGDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPAMEDFQLD+M+G+GP+ARS+K++L  FTL+ ATTR GLLT+PL+DRFGI  R
Sbjct: 121 VVEEILYPAMEDFQLDIMIGDGPAARSIKLDLPPFTLVGATTRAGLLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY ++DL  IV+R A+L+G+A+ +    EIA R+RGTPRIA RLLRRVRD+AEV    
Sbjct: 181 LEFYSVQDLTHIVKRSAQLSGVAMEEAGGMEIARRARGTPRIANRLLRRVRDYAEVKGDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT  IAD+AL  L +D  GFD +D R L  +   FGGGPVG+++++A +SE RD IED+
Sbjct: 241 VITAAIADSALNMLNVDHHGFDHMDRRLLLALIEKFGGGPVGVDSLAAAISEERDTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +EPY+IQQGF+ RTPRGR+    A+ H GI  P 
Sbjct: 301 LEPYLIQQGFLVRTPRGRMATQNAYNHFGILAPK 334


>gi|257487009|ref|ZP_05641050.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|331009349|gb|EGH89405.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 353

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 191/336 (56%), Positives = 249/336 (74%), Gaps = 2/336 (0%)

Query: 1   MMDREGLLSRN--VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M+D + L++      +++     +RP +L ++ GQ      +++FI+AA+ R EALDH L
Sbjct: 1   MIDADRLITAAGGRDRDEQMDRAIRPLSLVDYIGQPTVREQMELFIQAARGRNEALDHTL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA ++A+E+GV+ +STSGPV+ + GDLAA+LTNLE  DVLFIDEIHRLS
Sbjct: 61  IFGPPGLGKTTLANIIAQEMGVSIKSTSGPVLERPGDLAAILTNLEPNDVLFIDEIHRLS 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            IVEE+LYPAMEDFQLD+M+GEGP+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  
Sbjct: 121 PIVEEVLYPAMEDFQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQ 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           RL FY I DL TIV R A + GL +  + A EIA R+RGTPRIA RLLRRVRDFAEV   
Sbjct: 181 RLEFYNIADLSTIVSRSAGILGLVIEPQGAFEIARRARGTPRIANRLLRRVRDFAEVRGN 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             ITR+ AD AL  L +D+ GFD  D R L  +   F GGPVG+++++A +SE R  IED
Sbjct: 241 GQITRQTADKALNLLDVDEHGFDHQDRRLLLTMIEKFDGGPVGVDSLAAAISEERHTIED 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           ++EPY+IQQG+I RTPRGR++   A+ H G++IP R
Sbjct: 301 VLEPYLIQQGYIMRTPRGRVVTRHAYLHFGLNIPSR 336


>gi|90426274|ref|YP_534644.1| Holliday junction DNA helicase RuvB [Rhodopseudomonas palustris
           BisB18]
 gi|123274758|sp|Q20X11|RUVB_RHOPB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|90108288|gb|ABD90325.1| Holliday junction DNA helicase subunit RuvB [Rhodopseudomonas
           palustris BisB18]
          Length = 349

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 223/334 (66%), Positives = 270/334 (80%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M     +++     +D   + LRP+ L EF GQ +A +NL++FI+AA+ R EALDHVLFV
Sbjct: 1   MTTPSRIVTPERRVDDVGDTALRPQLLSEFVGQQQARANLQIFIDAARKRGEALDHVLFV 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ+VARELGV FR+TSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRLS  
Sbjct: 61  GPPGLGKTTLAQIVARELGVGFRATSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSPA 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDFQLDL++GEGP+ARSVKI LS+FTL+ ATTR GLLTNPL+DRFGIP+RL
Sbjct: 121 VEEVLYPAMEDFQLDLIIGEGPAARSVKIELSKFTLVGATTRAGLLTNPLRDRFGIPVRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           NFY I +L++IV RGA++  + +T + A EIA R+RGTPRIAGRLLRRVRDFA  A    
Sbjct: 181 NFYTIAELESIVTRGARVLSIGITPDGANEIARRARGTPRIAGRLLRRVRDFASAADKSA 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I R IAD AL  L +D  G D +D RYL+ IA N+GGGPVG+ET++A LSEPRDAIED+I
Sbjct: 241 IDRGIADHALSALEVDAAGLDAMDRRYLSTIAMNYGGGPVGVETMAAALSEPRDAIEDII 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           EP++IQ G++QRTPRGRLL   A++HLG+  P R
Sbjct: 301 EPFLIQCGYLQRTPRGRLLTSHAFKHLGLAEPAR 334


>gi|153855298|ref|ZP_01996464.1| hypothetical protein DORLON_02478 [Dorea longicatena DSM 13814]
 gi|149752297|gb|EDM62228.1| hypothetical protein DORLON_02478 [Dorea longicatena DSM 13814]
          Length = 328

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 172/323 (53%), Positives = 240/323 (74%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           + + N+ ++    + LRP+ LE++ GQ +A   LK++IEAAKAR EALDH+LF GPPGLG
Sbjct: 1   MTTENLEEDVRIENHLRPQLLEDYIGQAKAKEMLKIYIEAAKARGEALDHLLFYGPPGLG 60

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTTLA ++A E+ VN + TSGP I K G++AA+L NL++ D+LF+DEIHRL+  VEE+LY
Sbjct: 61  KTTLAGIIANEMNVNMKITSGPAIEKPGEMAAILNNLQEGDILFVDEIHRLNRQVEEVLY 120

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           PAMED+ +D+M+G+G SARS++++L +FTL+ ATTR G+LT PL+DRFG+  R+ +Y +E
Sbjct: 121 PAMEDYAIDIMIGKGASARSIRLDLPKFTLVGATTRAGMLTAPLRDRFGVVTRMEYYTVE 180

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +LK I+ R AK+  + + +  A  +A RSRGTPR+A RLL+RVRDFA+V +   IT E+A
Sbjct: 181 ELKMIILRSAKVLEVGIDENGAYAMARRSRGTPRLANRLLKRVRDFAQVKYNGYITEEVA 240

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           D AL  L +DK G DQ D   L  +   FGGGPVG+ET++A + E    IED+ EPY+++
Sbjct: 241 DYALDLLDVDKEGLDQTDRGILLAMIGKFGGGPVGLETLAASIGEDPGTIEDVYEPYLLK 300

Query: 307 QGFIQRTPRGRLLMPIAWQHLGI 329
            GFIQRTPRGR++   A+ HLGI
Sbjct: 301 NGFIQRTPRGRVVTDAAYAHLGI 323


>gi|320120442|gb|EFE27854.2| holliday junction DNA helicase RuvB [Filifactor alocis ATCC 35896]
          Length = 337

 Score =  375 bits (962), Expect = e-102,   Method: Composition-based stats.
 Identities = 179/333 (53%), Positives = 243/333 (72%), Gaps = 1/333 (0%)

Query: 3   DREGLLSRNVSQEDAD-ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           D E L+S +   ED +    LRPRTLEE+ GQ +  S L +FI+AA+ R EALDHVL  G
Sbjct: 4   DNERLISSSFQTEDIETDYSLRPRTLEEYIGQDKVKSQLDIFIQAARLRGEALDHVLLYG 63

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTL+ ++A E+  N + TSGP I K+GDLAA+LTNL D DVLFIDEIHRL+  V
Sbjct: 64  PPGLGKTTLSYIIANEMSANIKITSGPAIEKSGDLAAILTNLSDGDVLFIDEIHRLNRTV 123

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILYPAMED  LD+++G+GPSARS++I+L +FTLI ATTR G+LT+PL+DRFG+ + L 
Sbjct: 124 EEILYPAMEDRCLDIIIGKGPSARSIRIDLPKFTLIGATTRSGMLTSPLRDRFGVILNLE 183

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
            Y   +LK I+ R A++  + + ++AA EIA RSRGTPRIA RLL+RVRD+A+V     I
Sbjct: 184 LYSATNLKKIISRSAQILEIYIEEQAAEEIAKRSRGTPRIANRLLKRVRDYAQVKGDGNI 243

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           +  I   +LL   +D+ G D +D + L  I + F GGPVGIET++A + E R+ +E++ E
Sbjct: 244 SLAITQESLLVFEVDEEGLDIVDKKILCSIIQKFSGGPVGIETLTASIGEDRETVEEVYE 303

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           PY+IQ+GF+ RTPRGR+    +++HLG ++P +
Sbjct: 304 PYLIQKGFLNRTPRGRMATEQSYRHLGFEMPDK 336


>gi|292490336|ref|YP_003525775.1| Holliday junction DNA helicase RuvB [Nitrosococcus halophilus Nc4]
 gi|291578931|gb|ADE13388.1| Holliday junction DNA helicase RuvB [Nitrosococcus halophilus Nc4]
          Length = 348

 Score =  375 bits (962), Expect = e-102,   Method: Composition-based stats.
 Identities = 187/332 (56%), Positives = 243/332 (73%), Gaps = 1/332 (0%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M    GL+S   + ++A +   LRP  L ++ GQ +    ++VFI AA+AR EALDHVL 
Sbjct: 1   MTLSRGLVSPQGASDEAVVEPSLRPAKLADYVGQPQVQEQMEVFIPAARARGEALDHVLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTL+ +VA ELGVN R TSGPV+ + GDLAALLTNLE RDVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLSHIVANELGVNLRQTSGPVLERPGDLAALLTNLEPRDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED Q+D+M+GEGP+ARS+K++L  FTL+ ATTR GLLT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDRQIDIMIGEGPAARSIKLDLVPFTLVGATTRAGLLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++E L  IV+R A++ G+ +    A E+A RSRGTPRIA RLLRRVRD+AEV    
Sbjct: 181 LEFYDVEHLVLIVERTARILGMVMEAGGALEVARRSRGTPRIANRLLRRVRDYAEVKGDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            +T E+A  AL  L +D  GFD +D + L  +   F GGPVG+++++A +SE R  IED+
Sbjct: 241 RVTHEVAKKALDLLDVDSNGFDTMDRKLLLAMIEKFDGGPVGVDSLAAAISEERGTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           IEP++IQQGF+ RTPRGR+     + H G++ 
Sbjct: 301 IEPFLIQQGFVMRTPRGRMATRHTYLHFGLEP 332


>gi|116748436|ref|YP_845123.1| Holliday junction DNA helicase RuvB [Syntrophobacter fumaroxidans
           MPOB]
 gi|166231563|sp|A0LGY6|RUVB_SYNFM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|116697500|gb|ABK16688.1| Holliday junction DNA helicase RuvB [Syntrophobacter fumaroxidans
           MPOB]
          Length = 339

 Score =  375 bits (962), Expect = e-102,   Method: Composition-based stats.
 Identities = 198/328 (60%), Positives = 253/328 (77%), Gaps = 1/328 (0%)

Query: 5   EGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E ++     ++D  +   LRPR L+E+ GQ     NL VFIEAA+ RAE LDHVLF G P
Sbjct: 3   ERIVEPKPHEDDLPVENSLRPRRLDEYVGQQTVKENLAVFIEAARQRAEPLDHVLFHGFP 62

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKT+LA V++ ELGVN RSTSGPVI +AGDLAA+LTNLE  DVLFIDEIHRL+ +VEE
Sbjct: 63  GLGKTSLATVISNELGVNMRSTSGPVIERAGDLAAILTNLEQGDVLFIDEIHRLNHVVEE 122

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILYPAMEDFQLD+++G+GPSAR++K++L  FTL+ ATTR GLL+ PL+DRFG+ +RL FY
Sbjct: 123 ILYPAMEDFQLDIIIGQGPSARTIKLDLPPFTLVGATTRAGLLSPPLRDRFGVTLRLEFY 182

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           ++++LK IV R A++ G+ V  E A EIA RSRGTPRIA RLLRRVRD+AEV     ITR
Sbjct: 183 KVDELKLIVTRSARILGIRVDAEGALEIAKRSRGTPRIANRLLRRVRDYAEVRADGRITR 242

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           E+AD AL  L +D+ GFD +D + L+ I   + GGPVGIET+SA +SE RD +ED+ EPY
Sbjct: 243 EVADLALRMLDVDEKGFDGMDRKILSTIIEKYDGGPVGIETLSAAVSEERDTLEDVYEPY 302

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           +IQ+GF+ +TPRGRL   +A++HLGI +
Sbjct: 303 LIQEGFLNKTPRGRLATRLAYEHLGISV 330


>gi|21243873|ref|NP_643455.1| Holliday junction DNA helicase RuvB [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|24212376|sp|Q8PHV2|RUVB_XANAC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|21109474|gb|AAM37991.1| holliday junction binding protein DNA helicase [Xanthomonas
           axonopodis pv. citri str. 306]
          Length = 346

 Score =  375 bits (962), Expect = e-102,   Method: Composition-based stats.
 Identities = 193/333 (57%), Positives = 248/333 (74%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M ++  + S +  ++DA  + +RP+ L ++ GQ      ++++I+AAKAR EA+DHVL  
Sbjct: 1   MTEQRIIASSSTREDDAADASIRPKRLADYLGQQPVREQMEIYIQAAKARGEAMDHVLIF 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTL+ V+A ELGV+ R TSGPVI KAGDLAALLTNL+  DVLFIDEIHRLS +
Sbjct: 61  GPPGLGKTTLSHVIANELGVSLRVTSGPVIEKAGDLAALLTNLQPHDVLFIDEIHRLSPV 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDFQ+D+M+G+GP+ARS+KI+L  FTLI ATTR GLLT PL+DRFGI  RL
Sbjct: 121 VEEVLYPAMEDFQIDIMIGDGPAARSIKIDLPPFTLIGATTRAGLLTAPLRDRFGIVQRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  ++L  IV R A + G+  T E A EIA R+RGTPRIA RLLRRVRD+A+V  A  
Sbjct: 181 EFYSPQELTRIVIRSAAILGIDCTAEGAAEIARRARGTPRIANRLLRRVRDYAQVKAAGH 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I   +A AA+  L +D  GFD+LD R L  I  +F GGPVG+E+++A LSE R  +ED+I
Sbjct: 241 IDLPVAQAAMQMLKVDPEGFDELDRRMLRTIVEHFDGGPVGVESLAASLSEERGTLEDVI 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY+IQQGF+ RT RGR++ P A+ HLG+  P 
Sbjct: 301 EPYLIQQGFLIRTARGRMVTPKAYLHLGLKPPR 333


>gi|49474676|ref|YP_032718.1| Holliday junction DNA helicase B [Bartonella quintana str.
           Toulouse]
 gi|68715463|sp|Q6FYP6|RUVB_BARQU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|49240180|emb|CAF26646.1| Holliday junction DNA helicase ruvB [Bartonella quintana str.
           Toulouse]
          Length = 361

 Score =  375 bits (962), Expect = e-102,   Method: Composition-based stats.
 Identities = 231/331 (69%), Positives = 274/331 (82%), Gaps = 1/331 (0%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M  + LL       D D   LRP+ L++F GQ  A +NLK+FIEAAKAR EALDHVLFVG
Sbjct: 1   MKDQRLLDSVPLPNDPD-RSLRPQVLDDFIGQEAARANLKIFIEAAKARQEALDHVLFVG 59

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTL+Q++A+ELGVNFRSTSGPVIAK+GDLAALLTNLE+RDVLFIDEIHRL+  +
Sbjct: 60  PPGLGKTTLSQIMAKELGVNFRSTSGPVIAKSGDLAALLTNLEERDVLFIDEIHRLNPAI 119

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILYPAMED+QLDL++GEGP+ARSVKI+L++FTL+AATTR+GLLT PL+DRFGIPIRLN
Sbjct: 120 EEILYPAMEDYQLDLILGEGPAARSVKIDLAKFTLVAATTRLGLLTTPLRDRFGIPIRLN 179

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY IE+L+ IVQR A+L  + ++D+ A EIA R+RGTPRIAGRLLRRV DFA V  AK I
Sbjct: 180 FYTIEELEYIVQRNARLFSVQISDDGAHEIARRARGTPRIAGRLLRRVCDFALVKRAKKI 239

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
            R++AD AL RL +D +G D LD RYL +IA  F GGPVGIETI+A LSEPRDAIED+IE
Sbjct: 240 DRKVADEALSRLEVDHLGLDPLDRRYLLLIAETFLGGPVGIETIAAALSEPRDAIEDIIE 299

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           PY++QQGFIQRT RGR+L   AW HLG+  P
Sbjct: 300 PYLLQQGFIQRTARGRILREKAWNHLGLCAP 330


>gi|294501381|ref|YP_003565081.1| holliday junction DNA helicase RuvB [Bacillus megaterium QM B1551]
 gi|294351318|gb|ADE71647.1| holliday junction DNA helicase RuvB [Bacillus megaterium QM B1551]
          Length = 333

 Score =  375 bits (962), Expect = e-102,   Method: Composition-based stats.
 Identities = 177/333 (53%), Positives = 245/333 (73%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD   +    + +E+     LRP+TL+++ GQ +  S+L +FI+AAK R+E LDHVL  G
Sbjct: 1   MDDRIVTGDVLGEEEIIEQSLRPQTLQQYIGQHKVKSHLDIFIKAAKMRSETLDHVLLYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+GV  R+TSGP I + GDLAA+LT+LE  DVLFIDEIHRL+  V
Sbjct: 61  PPGLGKTTLATIIANEMGVQIRTTSGPAIERPGDLAAVLTSLEPGDVLFIDEIHRLNRSV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTR GLL++PL+DRFG+  RL 
Sbjct: 121 EEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGLLSSPLRDRFGVLSRLE 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y+ EDL +IV+R A +  + + ++A  E+A R+RGTPRIA RLLRRVRDFA+V     I
Sbjct: 181 YYQEEDLASIVERTAAILDVEIDEKATFEMARRARGTPRIANRLLRRVRDFAQVKGDGAI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T  +A+ AL  L +D++G D +D + L  I   F GGPVG++TISA + E    IED+ E
Sbjct: 241 TERLANEALEMLQVDRLGLDHIDHKLLRGIIEKFRGGPVGLDTISATIGEESHTIEDVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           PY++Q GF+QRTPRGR++ P+ + H  +++P +
Sbjct: 301 PYLLQIGFLQRTPRGRIVTPLVYDHFQLEVPDQ 333


>gi|134294765|ref|YP_001118500.1| Holliday junction DNA helicase RuvB [Burkholderia vietnamiensis G4]
 gi|20140131|sp|Q93LP2|RUVB_BURCE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|166231473|sp|A4JBL2|RUVB_BURVG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|14572550|gb|AAK64609.1| RuvB [Burkholderia cepacia]
 gi|134137922|gb|ABO53665.1| Holliday junction DNA helicase RuvB [Burkholderia vietnamiensis G4]
          Length = 355

 Score =  375 bits (962), Expect = e-102,   Method: Composition-based stats.
 Identities = 194/330 (58%), Positives = 244/330 (73%), Gaps = 2/330 (0%)

Query: 5   EGLL--SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           E ++  +   S E+     LRPR L+++ GQ +    L++FIEAAK R+E LDHVL  GP
Sbjct: 10  ERIIAATPASSHEEVFERALRPRQLDDYVGQEKVRGQLEIFIEAAKRRSEPLDHVLLFGP 69

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++ARE+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VE
Sbjct: 70  PGLGKTTLAHIIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVE 129

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILYPA+ED+Q+D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL F
Sbjct: 130 EILYPALEDYQIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEF 189

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y+ E L  IV+R A L    +    A EIA RSRGTPRIA RLLRRVRD+AEV     IT
Sbjct: 190 YDAEQLSRIVRRSAALLNAQIDPNGALEIAKRSRGTPRIANRLLRRVRDYAEVKADGQIT 249

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             +ADAAL  L +D +GFD +D + L  I   F GGPVGI+ ++A + E RD IED++EP
Sbjct: 250 AAVADAALAMLDVDPVGFDLMDRKLLEAILHKFDGGPVGIDNLAAAIGEERDTIEDVLEP 309

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           Y+IQQGF+QRTPRGR+   + ++H G+  P
Sbjct: 310 YLIQQGFLQRTPRGRVATLLTYRHFGLSAP 339


>gi|114563351|ref|YP_750864.1| Holliday junction DNA helicase B [Shewanella frigidimarina NCIMB
           400]
 gi|122299599|sp|Q081N9|RUVB_SHEFN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|114334644|gb|ABI72026.1| Holliday junction DNA helicase RuvB [Shewanella frigidimarina NCIMB
           400]
          Length = 336

 Score =  375 bits (962), Expect = e-102,   Method: Composition-based stats.
 Identities = 193/335 (57%), Positives = 251/335 (74%), Gaps = 1/335 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+   V  Q++     +RP+ L+E+TGQ +  + LKVFI+AA  R EALDH+L 
Sbjct: 1   MIEADRLIQPQVQGQDELIDRAMRPKMLDEYTGQDDTRAQLKVFIQAAINRREALDHMLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN +STSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLAMIVANEMGVNIKSTSGPVLEKAGDLAALLTNLEEGDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPAMED+QLD+M+G+GP+ARS+K++L  FTLI ATTR G LT+PL+ RFGIP+R
Sbjct: 121 VVEEILYPAMEDYQLDIMIGDGPAARSIKLDLPPFTLIGATTRAGALTSPLRARFGIPLR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY + DL TIV R A +  L + ++ A EIA RSRGTPRIA RLLRRVRD+AEV H  
Sbjct: 181 LEFYNVADLTTIVTRSANVMNLEIDEQGAIEIAKRSRGTPRIANRLLRRVRDYAEVKHDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            +++ +A+ AL  L +D  GFD LD + L  I   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 KVSQTVAEYALDLLDVDDQGFDYLDRKLLLAIIDKFMGGPVGLDNLAAAIGEDRETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           +EP++IQQGFIQRTPRGR+    A+ H  +  P +
Sbjct: 301 LEPFLIQQGFIQRTPRGRIASQRAYDHFSLVRPEK 335


>gi|50085686|ref|YP_047196.1| Holliday junction DNA helicase RuvB [Acinetobacter sp. ADP1]
 gi|68715457|sp|Q6F991|RUVB_ACIAD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|49531662|emb|CAG69374.1| holliday junction helicase, subunit B [Acinetobacter sp. ADP1]
          Length = 334

 Score =  375 bits (962), Expect = e-102,   Method: Composition-based stats.
 Identities = 183/329 (55%), Positives = 239/329 (72%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           + L+S     ED     +RP +L ++ GQ      +++FI AA+ R EALDH L  GPPG
Sbjct: 3   DRLISGTEKPEDHFDRAIRPTSLADYIGQPVVREQMEIFIGAARGRGEALDHTLIFGPPG 62

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLA ++ARE+G N +STSGPV+ +AGDLAA+LTNLE+ DVLFIDEIHRLS ++EEI
Sbjct: 63  LGKTTLANIIAREMGGNLKSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPVIEEI 122

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPAMED+QLD+M+GEGP+ARS+K++L  FTL+AATTR GLLT+PL+DRFGI  RL FY 
Sbjct: 123 LYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRLEFYS 182

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +EDL  IV R A L  + +T   A E+A RSRGTPRIA RLLRRVRD+A+V     +T +
Sbjct: 183 VEDLTHIVTRSANLMNVPMTSTGAAEVARRSRGTPRIANRLLRRVRDYAQVKGTGEVTHD 242

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +A  AL  L +DK G D LD RYL+M+   F GGP G+E ++A ++E    +ED+IEPY+
Sbjct: 243 MAQRALDMLNVDKDGLDTLDRRYLSMLLERFDGGPAGVEALAAAMAEDSGTLEDVIEPYL 302

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           IQQG++ RT RGR+   +A+   G+  P 
Sbjct: 303 IQQGYVMRTARGRIATNMAYLQFGLTPPE 331


>gi|170723159|ref|YP_001750847.1| Holliday junction DNA helicase RuvB [Pseudomonas putida W619]
 gi|229890173|sp|B1JD70|RUVB_PSEPW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|169761162|gb|ACA74478.1| Holliday junction DNA helicase RuvB [Pseudomonas putida W619]
          Length = 348

 Score =  375 bits (962), Expect = e-102,   Method: Composition-based stats.
 Identities = 186/335 (55%), Positives = 249/335 (74%), Gaps = 1/335 (0%)

Query: 1   MMDREGLLSRN-VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L++ +   +E+     +RP  L+E+ GQ      + +FI+AA+ R E+LDH L 
Sbjct: 1   MIEADRLIAASGRDREEVQDRAIRPLRLDEYIGQPVVREQMALFIQAARGRNESLDHTLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A+E+GV+ +STSGP++ + GDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIIAQEMGVSVKSTSGPILERPGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMEDFQLD+M+GEGP+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDFQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY  +DL TIV R A + GL + D+ A EIA R+RGTPRIA RLLRRVRD+AEV    
Sbjct: 181 LEFYSDKDLATIVSRSANILGLVIEDQGAYEIARRARGTPRIANRLLRRVRDYAEVRGKG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT+ +AD AL  L +D+ GFD  D R L  +   F GGPVG++ ++A +SE R  IED+
Sbjct: 241 QITKAVADLALNLLDVDERGFDHSDRRLLLTMIEKFDGGPVGVDNLAAAISEERHTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           +EPY+IQQG+I RTPRGR++   A+ H G+++P R
Sbjct: 301 LEPYLIQQGYIMRTPRGRVVTRHAYLHFGLNVPGR 335


>gi|260587810|ref|ZP_05853723.1| holliday junction DNA helicase RuvB [Blautia hansenii DSM 20583]
 gi|260542075|gb|EEX22644.1| holliday junction DNA helicase RuvB [Blautia hansenii DSM 20583]
          Length = 329

 Score =  375 bits (962), Expect = e-102,   Method: Composition-based stats.
 Identities = 176/327 (53%), Positives = 242/327 (74%), Gaps = 1/327 (0%)

Query: 4   REGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
            + +++ +V +ED      LRP+ L ++ GQ +A  NLKV+IEAAK R +ALDHVLF GP
Sbjct: 2   EKRIITTDVMEEDLRTEGNLRPQLLNDYIGQEKAKKNLKVYIEAAKQRGDALDHVLFYGP 61

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++A ELGV+ + TSGP I K G++AA+L NL++ DVLF+DEIHRL+  VE
Sbjct: 62  PGLGKTTLAGIIANELGVHMKVTSGPAIEKPGEMAAILNNLQENDVLFVDEIHRLNRQVE 121

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMED+ +D+M+G+G +ARS++++L +FTL+ ATTR GLLT PL+DRFG+   L F
Sbjct: 122 EVLYPAMEDYAIDIMIGKGATARSIRLDLPKFTLVGATTRAGLLTAPLRDRFGVVHHLEF 181

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  E+L+TI+ R AK+ G+ + +  A E+A RSRGTPR+A RLL+RVRDFA+V +   IT
Sbjct: 182 YTEEELQTIIIRSAKVLGVEIDEAGALEMAKRSRGTPRLANRLLKRVRDFAQVKYDGKIT 241

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           +E+AD A+  L +D+ G DQ D   LT I   F GGPVG++T+SA + E    IED+ EP
Sbjct: 242 KEVADFAMDLLEVDRYGLDQTDRLLLTTIIERFSGGPVGLDTLSAAIGEDAGTIEDVYEP 301

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           Y+I+ GF+ RTPRGR +  + + HLGI
Sbjct: 302 YLIKNGFLLRTPRGRTVTELTYHHLGI 328


>gi|309791416|ref|ZP_07685923.1| Holliday junction DNA helicase B [Oscillochloris trichoides DG6]
 gi|308226549|gb|EFO80270.1| Holliday junction DNA helicase B [Oscillochloris trichoides DG6]
          Length = 343

 Score =  375 bits (962), Expect = e-102,   Method: Composition-based stats.
 Identities = 186/333 (55%), Positives = 242/333 (72%), Gaps = 1/333 (0%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M  E LL+ +   +D  +   LRPR L EF GQ +    LK+ I AAKARAE LDH LF 
Sbjct: 1   MAEERLLNPSADSDDQQVEKSLRPRNLAEFIGQEKTVDQLKIAITAAKARAEPLDHTLFY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKT+LA V+A+E+GV  + TSGP I +AGDLAA+LTNL+  DVLFIDE+HRL+  
Sbjct: 61  GPPGLGKTSLAGVIAQEMGVKIKITSGPAIERAGDLAAVLTNLQKDDVLFIDEVHRLNRA 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDF LDLMVG+GPSARS+++NL RFT++ ATTR+ LLT+PL+DRF    RL
Sbjct: 121 VEEVLYPAMEDFALDLMVGKGPSARSLRLNLPRFTVVGATTRLALLTSPLRDRFVSVHRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  E +  IV R A++ G+ +++E A EI  R+RGTPRIA RLLRRVRD+A+V     
Sbjct: 181 IFYSDEAMCEIVTRSARILGMPISNEGALEIGRRARGTPRIANRLLRRVRDYAQVIGDGV 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I   +A AAL +L +D +G D+ D R L  I   F GGPVG+ T++A L+E  DA+ED+ 
Sbjct: 241 IDVPVARAALAQLEVDDLGLDENDRRLLHAIIELFNGGPVGLSTLAAALAEEVDAVEDVY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EP+++Q GF+QRTPRGR+    A++HLGI +P+
Sbjct: 301 EPFLLQLGFLQRTPRGRIATRRAYEHLGIPVPN 333


>gi|260912904|ref|ZP_05919389.1| crossover junction endoribonuclease subunit B [Pasteurella dagmatis
           ATCC 43325]
 gi|260632894|gb|EEX51060.1| crossover junction endoribonuclease subunit B [Pasteurella dagmatis
           ATCC 43325]
          Length = 336

 Score =  374 bits (961), Expect = e-102,   Method: Composition-based stats.
 Identities = 187/331 (56%), Positives = 247/331 (74%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + ++S  V   ++     +RP+ L ++ GQ + C  + +FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRIISATVKLDDEVIDRAIRPKLLSDYVGQPQVCEQMDIFIQAAKLRQDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            +EE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 AIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY ++DL +IV R A    L + D A+ EIA RSRGTPRIA RLLRRVRDFA+V +  
Sbjct: 181 LEFYSVDDLTSIVTRSANCLNLIIADNASYEIARRSRGTPRIANRLLRRVRDFADVRNGG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I+ +IA AAL+ L +D  GFD LD + L+ +   F GGPVG++ ++A + E RD IED+
Sbjct: 241 VISEDIAKAALMMLDVDDAGFDYLDRKLLSAVIERFDGGPVGLDNLAAAIGEERDTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           +EPY+IQQGF+QRTPRGR+     ++H G+ 
Sbjct: 301 LEPYLIQQGFLQRTPRGRMATSRTYRHFGVQ 331


>gi|99082211|ref|YP_614365.1| Holliday junction DNA helicase RuvB [Ruegeria sp. TM1040]
 gi|123252171|sp|Q1GE13|RUVB_SILST RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|99038491|gb|ABF65103.1| Holliday junction DNA helicase RuvB [Ruegeria sp. TM1040]
          Length = 339

 Score =  374 bits (961), Expect = e-102,   Method: Composition-based stats.
 Identities = 220/333 (66%), Positives = 260/333 (78%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M+D +  L      ED D   LRP+ L EF GQ EA +NL+VFIE+A+ R EA+DH LF 
Sbjct: 1   MIDADPTLRPEPLPEDND-RALRPQGLGEFIGQAEARANLRVFIESARRRGEAMDHTLFH 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ+VARELGVNFR TSGPV+AKAGDLAA+LTNLE RDVLFIDEIHRL+  
Sbjct: 60  GPPGLGKTTLAQIVARELGVNFRMTSGPVLAKAGDLAAILTNLEARDVLFIDEIHRLNPA 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDF+LDL++GEGP+AR+V+I L  FTL+ ATTR+GLLT PL+DRFGIP RL
Sbjct: 120 VEEVLYPAMEDFELDLVIGEGPAARTVRIELQPFTLVGATTRMGLLTTPLRDRFGIPTRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY I++L  IV R A+  G    D  A EIA R+RGTPRIAGRLLRRV DFA V    T
Sbjct: 180 QFYTIDELFEIVSRNARKLGAPADDAGAREIARRARGTPRIAGRLLRRVVDFAVVEGDGT 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           ITRE+AD AL RL +D++G D  D RYL ++A N+GGGPVGIET+SA LSE RDA+E++I
Sbjct: 240 ITRELADGALTRLGVDQLGLDGADRRYLRLVAENYGGGPVGIETMSAALSESRDALEEVI 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY++QQG IQRTPRGR+L   AW HLGI  P 
Sbjct: 300 EPYLLQQGLIQRTPRGRMLAQKAWTHLGIAPPK 332


>gi|225572216|ref|ZP_03781080.1| hypothetical protein RUMHYD_00510 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040278|gb|EEG50524.1| hypothetical protein RUMHYD_00510 [Blautia hydrogenotrophica DSM
           10507]
          Length = 332

 Score =  374 bits (961), Expect = e-102,   Method: Composition-based stats.
 Identities = 170/329 (51%), Positives = 241/329 (73%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD+  + +  + ++      LRP++L E+ GQ +    LK++IEAA+ R +ALDHVLF G
Sbjct: 3   MDKRVITTEAMEEDLRLEGSLRPQSLSEYIGQEKTKKTLKIYIEAARQRGDALDHVLFYG 62

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+GV+ + TSGP I K G++AA+L NL++ DVLF+DEIHRL+  V
Sbjct: 63  PPGLGKTTLAGIIANEMGVHMKVTSGPAIEKPGEMAAILNNLQEGDVLFVDEIHRLNRQV 122

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMED+ +D+M+G+G SARS++++L +FTL+ ATTR GLLT PL+DRFG+   L 
Sbjct: 123 EEVLYPAMEDYAIDIMIGKGASARSIRLDLPKFTLVGATTRAGLLTAPLRDRFGVMHHLE 182

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY + +L TI+ R A++  + +  + A EIA RSRGTPR+A RLL+RVRDFA+V +   I
Sbjct: 183 FYTVLELTTIILRSAQVLEVEIEPKGAQEIAKRSRGTPRLANRLLKRVRDFAQVKYDGKI 242

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T E+A  AL  L +D+ G DQ+D R L  +  NF GGPVG+ET++A + E    +ED+ E
Sbjct: 243 TLEVAQFALDLLEVDQYGLDQVDRRILKTLIINFQGGPVGLETLAASVGEDPGTVEDVYE 302

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           PY++Q GF+ RTPRGR+   +A++HLGI+
Sbjct: 303 PYLLQNGFLSRTPRGRIASDLAYRHLGIE 331


>gi|114776333|ref|ZP_01451378.1| holliday junction DNA helicase RuvB [Mariprofundus ferrooxydans
           PV-1]
 gi|114553163|gb|EAU55561.1| holliday junction DNA helicase RuvB [Mariprofundus ferrooxydans
           PV-1]
          Length = 346

 Score =  374 bits (961), Expect = e-102,   Method: Composition-based stats.
 Identities = 190/331 (57%), Positives = 252/331 (76%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           ++E LL   ++  D   + LRP+ L+E+ GQ +  +NL V+I+AA+AR E+LDHVL  GP
Sbjct: 4   EQERLLGGEINASDNWDAALRPKKLDEYVGQEKIRANLGVYIKAARARNESLDHVLLYGP 63

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++A E+GV+ R+TSGPVI K GDLAA+LTN+E+ DVLFIDEIHRLS  VE
Sbjct: 64  PGLGKTTLANIIAMEMGVHIRATSGPVIEKPGDLAAMLTNIEEGDVLFIDEIHRLSPQVE 123

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILYPAMEDFQLDL++G+GP+ARS+K+++ RFTL+ ATTR GLLTNPL+DRFG+  RL F
Sbjct: 124 EILYPAMEDFQLDLIIGQGPAARSIKMDIPRFTLVGATTRAGLLTNPLRDRFGVIERLEF 183

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y   +L  I +R A+L  +      A EIA RSRGTPRIA RLLRRVRDFAEV H+  IT
Sbjct: 184 YSHPELTLIAERSARLLNIQTDHGGALEIARRSRGTPRIANRLLRRVRDFAEVEHSGVIT 243

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            ++AD++L RL +D +G D  D R L ++   +GGGPVG++T++A +SE RD IED++EP
Sbjct: 244 GKVADSSLERLEVDHLGLDHQDRRLLAVMIDKYGGGPVGLDTLAASISEERDTIEDVLEP 303

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           Y++Q+G I RTPRGR   P+A+ H+  ++P 
Sbjct: 304 YLLQEGLIARTPRGRTATPLAYAHMNRELPD 334


>gi|33152770|ref|NP_874123.1| Holliday junction DNA helicase B [Haemophilus ducreyi 35000HP]
 gi|44888427|sp|Q7VKV5|RUVB_HAEDU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|33148994|gb|AAP96512.1| Holliday junction DNA helicase RuvB [Haemophilus ducreyi 35000HP]
          Length = 334

 Score =  374 bits (961), Expect = e-102,   Method: Composition-based stats.
 Identities = 184/331 (55%), Positives = 247/331 (74%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + ++S +   +E+     +RP+ L ++ GQ      +++FI+AAK R EALDH+L 
Sbjct: 1   MIEADRIISASPQREEEVVDRAIRPKLLTDYVGQPSVREQMEIFIKAAKLRHEALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  D+LFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPYDILFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            +EE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ ATTR G LT+PL+DRFGI  R
Sbjct: 121 AIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY ++DL +IV+R A    L ++ + A E+A RSRGTPRIA RLLRRVRD+A+V +  
Sbjct: 181 LEFYNVDDLTSIVKRSAACLNLNLSADGAYEVARRSRGTPRIANRLLRRVRDYADVRNNG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT EIA  AL+ L +D  GFD +D++ L  I   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 VITSEIAKQALVMLDVDPQGFDFMDIKLLQAIVERFDGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           +EPY+IQQGF+QRTPRGR+     + HLGI 
Sbjct: 301 LEPYLIQQGFLQRTPRGRIATTRTYAHLGIS 331


>gi|23015564|ref|ZP_00055336.1| COG2255: Holliday junction resolvasome, helicase subunit
           [Magnetospirillum magnetotacticum MS-1]
          Length = 347

 Score =  374 bits (961), Expect = e-102,   Method: Composition-based stats.
 Identities = 207/328 (63%), Positives = 263/328 (80%), Gaps = 1/328 (0%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            ++S   +  DA  + LRP +L++F GQ + C NLKVFI AA+AR +ALDHVLF GPPGL
Sbjct: 4   RVVSPEQNSADA-ETSLRPLSLDDFVGQRQVCENLKVFISAARARGDALDHVLFHGPPGL 62

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLAQ+VARELGV FR+TSGPVI +AGDLAALLTNLE  DVLFIDEIHRL+  +EE+L
Sbjct: 63  GKTTLAQIVARELGVGFRATSGPVIQRAGDLAALLTNLEANDVLFIDEIHRLNPAIEEVL 122

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           YPAMEDFQLDL++GEGP+ARSV+I+L RFTL+ ATTR GLLT PL++RFGIP R+NFYE 
Sbjct: 123 YPAMEDFQLDLIIGEGPAARSVRIDLPRFTLVGATTRSGLLTTPLRERFGIPCRMNFYEP 182

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
            +L++IV RGA++    +T + A E+A RSRGTPR+AGRLLRRVRDFA VA    +   +
Sbjct: 183 AELESIVARGARVLNFDLTPDGAAEVARRSRGTPRVAGRLLRRVRDFAAVAGRSPVDAPV 242

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           ADAAL RL +D++G D +D RYL  IA N+GGGPVG+ET++A LSE RD +E+++EPY++
Sbjct: 243 ADAALNRLEVDRIGLDAMDRRYLRCIAENYGGGPVGVETLAAALSESRDTLEEVVEPYLL 302

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           QQG IQRTPRGR++    ++H+GI+ P 
Sbjct: 303 QQGMIQRTPRGRMVSASGFKHIGINPPK 330


>gi|291280185|ref|YP_003497020.1| Holliday junction DNA helicase RuvB [Deferribacter desulfuricans
           SSM1]
 gi|290754887|dbj|BAI81264.1| Holliday junction DNA helicase RuvB [Deferribacter desulfuricans
           SSM1]
          Length = 343

 Score =  374 bits (961), Expect = e-102,   Method: Composition-based stats.
 Identities = 190/326 (58%), Positives = 245/326 (75%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
             +      +ED     +RP + +E+ GQ +   NLK+F+EAAK R E LDH L  GPPG
Sbjct: 2   REMFDPERREEDIQGIHIRPNSFDEYVGQKKIVENLKIFVEAAKKRGEPLDHCLIYGPPG 61

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLA ++A ELGV+ +STSGP I K GDLAA+LTNL + DVLFIDEIHRL   VEEI
Sbjct: 62  LGKTTLANIIANELGVSIKSTSGPTIEKPGDLAAILTNLSEGDVLFIDEIHRLHTSVEEI 121

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPAMEDF+LD+++G+GP+AR++KI+L +FTLI ATTR GLLT+PL+DRFG+  RL+FY+
Sbjct: 122 LYPAMEDFKLDIIIGQGPAARTIKIDLPKFTLIGATTRAGLLTSPLRDRFGMIFRLDFYD 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +++LK IV RGAK+ G+ + D AA  IA R RGTPRIA R+LRRVRDFAEV +   +T+E
Sbjct: 182 VDELKQIVLRGAKVLGVEIDDSAAMVIASRCRGTPRIAHRILRRVRDFAEVMNDGVVTKE 241

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           IAD  L RL ID  G D  D  +L  I   + GGPVGIET+SA LSE +D +ED+IEPY+
Sbjct: 242 IADFGLNRLEIDSAGLDINDRNFLLAIIEKYNGGPVGIETLSATLSEEKDTLEDVIEPYL 301

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGID 330
           I +GFI++TPRGR++ P+A++HL I 
Sbjct: 302 IYKGFIKKTPRGRVVTPLAYEHLNIP 327


>gi|56460193|ref|YP_155474.1| Holliday junction DNA helicase RuvB [Idiomarina loihiensis L2TR]
 gi|81821735|sp|Q5QYU5|RUVB_IDILO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|56179203|gb|AAV81925.1| Holliday junction resolvasome, helicase subunit [Idiomarina
           loihiensis L2TR]
          Length = 339

 Score =  374 bits (961), Expect = e-102,   Method: Composition-based stats.
 Identities = 190/337 (56%), Positives = 243/337 (72%), Gaps = 6/337 (1%)

Query: 1   MMDRE-----GLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEAL 54
           M++ +      L+   V  ED A    +RP+TL ++TGQ      + +FIEAA+ R EAL
Sbjct: 1   MIEADQIPTQRLIEPEVQGEDEAVDRAIRPKTLADYTGQKHVVEQMGIFIEAARKRQEAL 60

Query: 55  DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEI 114
           DH+L  GPPGLGKTTLA +VA EL V+ ++TSGPV+ KAGDLAALLTNLE  DVLFIDEI
Sbjct: 61  DHLLIFGPPGLGKTTLANIVANELDVSIKTTSGPVLEKAGDLAALLTNLEAHDVLFIDEI 120

Query: 115 HRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRF 174
           HRLS +VEEILYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRF
Sbjct: 121 HRLSPVVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGALTSPLRDRF 180

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
           GI  RL FY++ +L  IV R A    + + D  A EIA RSRGTPRIA RLLRRVRD+AE
Sbjct: 181 GIVQRLEFYDVNELTDIVGRSAHFMNVRMLDGGAREIARRSRGTPRIANRLLRRVRDYAE 240

Query: 235 VAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRD 294
           V     +    A+AAL  + +D+ GFD +D + L  I   F GGPVG++ ++A + E +D
Sbjct: 241 VRGNGDVDEVTANAALTMVDVDQAGFDYMDRKLLLAIMEKFMGGPVGLDNLAAAIGEEKD 300

Query: 295 AIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
            IED++EPY+IQQGF+QRTPRGR+  P A+QH G+  
Sbjct: 301 TIEDVLEPYLIQQGFLQRTPRGRIATPRAYQHFGLKP 337


>gi|253989948|ref|YP_003041304.1| Holliday junction DNA helicase RuvB [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|211639071|emb|CAR67684.1| ruvb protein, holliday junction helicase subunit a (ec 3.6.1.-)
           [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253781398|emb|CAQ84561.1| RuvB protein, holliday junction helicase subunit A [Photorhabdus
           asymbiotica]
          Length = 335

 Score =  374 bits (961), Expect = e-102,   Method: Composition-based stats.
 Identities = 190/330 (57%), Positives = 250/330 (75%), Gaps = 1/330 (0%)

Query: 1   MMDREGLLSRN-VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S   +  ++A    +RP+ L E+ GQ + C  +++FI+AA+ R +ALDH+L 
Sbjct: 1   MIEADRLVSAEILPDDEAIDRAIRPKLLSEYVGQPQVCEQMEIFIQAARQRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY ++DL++IV R A+  G+ +TD+ A ++AMRSRGTPRI  RLLRRVRDFA+V    
Sbjct: 181 LEFYNVDDLQSIVSRSARFMGVDITDDGARQVAMRSRGTPRITNRLLRRVRDFAQVKGDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  +IA  AL  L++D  GFD LD + L  I   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 AIDGDIATRALDMLSVDSAGFDYLDRKLLIAIIDKFMGGPVGVDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           +EP++IQQGFIQRT RGR+    A++H GI
Sbjct: 301 LEPFLIQQGFIQRTSRGRIATNHAYRHFGI 330


>gi|217977801|ref|YP_002361948.1| Holliday junction DNA helicase RuvB [Methylocella silvestris BL2]
 gi|254767432|sp|B8EK46|RUVB_METSB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|217503177|gb|ACK50586.1| Holliday junction DNA helicase RuvB [Methylocella silvestris BL2]
          Length = 348

 Score =  374 bits (961), Expect = e-102,   Method: Composition-based stats.
 Identities = 232/330 (70%), Positives = 274/330 (83%), Gaps = 1/330 (0%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
             L++ +  ++DA++S LRP  L +FTGQ  A +NLKVFIEAAKAR EALDHVLF GPPG
Sbjct: 6   RRLIAPDAREDDAELS-LRPLALADFTGQASARANLKVFIEAAKARREALDHVLFWGPPG 64

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLAQ+VARELGVNFRSTSGPVIAKAGDLAA LT LEDRDVLFIDEIHRL+  VEEI
Sbjct: 65  LGKTTLAQIVARELGVNFRSTSGPVIAKAGDLAAQLTGLEDRDVLFIDEIHRLNPAVEEI 124

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPAMEDFQLDL++GEGP ARSVKI+L++FTLI ATTR GLLT PL+DRFGIPIRL +Y 
Sbjct: 125 LYPAMEDFQLDLIIGEGPGARSVKIDLAKFTLIGATTRAGLLTTPLRDRFGIPIRLEYYT 184

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +E+L+ IV+RGA++  + + DE A EIA R+RGTPRIAGRLLRRVRDFA V     ITR 
Sbjct: 185 VEELECIVRRGARVLSIPIADEGANEIARRARGTPRIAGRLLRRVRDFAAVDGDPEITRA 244

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +AD AL  L +D +G DQ+D R+L  IA +FGGGPVG+ETI+A LSEPRDAIED+IEPY+
Sbjct: 245 VADRALRLLDVDHIGLDQMDRRFLQTIALSFGGGPVGVETIAAALSEPRDAIEDIIEPYL 304

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           IQQGF+QRTPRGR+L   A++HLG+  P R
Sbjct: 305 IQQGFLQRTPRGRMLTSHAFRHLGLAEPPR 334


>gi|66767464|ref|YP_242226.1| Holliday junction DNA helicase RuvB [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|81306556|sp|Q4UXL7|RUVB_XANC8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|66572796|gb|AAY48206.1| holliday junction binding protein, DNA helicase [Xanthomonas
           campestris pv. campestris str. 8004]
          Length = 346

 Score =  374 bits (961), Expect = e-102,   Method: Composition-based stats.
 Identities = 193/333 (57%), Positives = 247/333 (74%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M ++  + S    +++A  + +RP+ L ++ GQ      ++++I+AAKAR EA+DHVL  
Sbjct: 1   MTEQRTIASSATREDEAADASIRPKRLADYLGQQPVRDQMEIYIQAAKARGEAMDHVLIF 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTL+ V+A ELGVN R TSGPVI KAGDLAALLTNL+  DVLFIDEIHRLS +
Sbjct: 61  GPPGLGKTTLSHVIANELGVNLRVTSGPVIEKAGDLAALLTNLQPHDVLFIDEIHRLSPV 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDFQ+D+M+G+GP+ARS+KI+L  FTLI ATTR GLLT PL+DRFGI  RL
Sbjct: 121 VEEVLYPAMEDFQIDIMIGDGPAARSIKIDLPPFTLIGATTRAGLLTAPLRDRFGIVQRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  ++L  IV R A + G+  T + A EIA R+RGTPRIA RLLRRVRDFA+V  A  
Sbjct: 181 EFYSPQELTRIVIRSAAILGIDCTPDGAAEIARRARGTPRIANRLLRRVRDFAQVKAAGH 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I   +A AA+  L +D  GFD+LD R L  I  +F GGPVG+E+++A LSE R  +ED+I
Sbjct: 241 IDLAVAQAAMQMLKVDPEGFDELDRRMLRTIVDHFDGGPVGVESLAASLSEERGTLEDVI 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY+IQQGF+ RT RGR++ P A+ HLG+  P 
Sbjct: 301 EPYLIQQGFLIRTARGRMVTPKAYLHLGLKPPR 333


>gi|15895552|ref|NP_348901.1| Holliday junction DNA helicase RuvB [Clostridium acetobutylicum
           ATCC 824]
 gi|20140171|sp|Q97GT1|RUVB_CLOAB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|15025289|gb|AAK80241.1|AE007729_8 Holliday junction specific DNA helicase, subunit ruvB [Clostridium
           acetobutylicum ATCC 824]
 gi|325509701|gb|ADZ21337.1| Holliday junction DNA helicase B [Clostridium acetobutylicum EA
           2018]
          Length = 349

 Score =  374 bits (961), Expect = e-102,   Method: Composition-based stats.
 Identities = 178/329 (54%), Positives = 237/329 (72%), Gaps = 1/329 (0%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD   L S N+ +ED+    LRP+ L E+ GQ +    + +FI AAK R EALDHVLF G
Sbjct: 1   MDDRILTSVNL-EEDSAEYNLRPQKLNEYIGQSKVKEKMDIFIRAAKKRGEALDHVLFYG 59

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A+E+G N + TSGP I +AGDLAA+LT L + DVLFIDEIHRL+  V
Sbjct: 60  PPGLGKTTLANIIAKEMGGNLKVTSGPAIERAGDLAAILTGLSEYDVLFIDEIHRLNRSV 119

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILYPAMED+ LD+++G+G +A+S++++L +FTLI ATTRVGLLT PL+DRFG+   + 
Sbjct: 120 EEILYPAMEDYALDIIIGKGAAAKSIRLDLPKFTLIGATTRVGLLTAPLRDRFGVLCPME 179

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY  E+LK I+ R + +  + + ++AA EIAMRSRGTPRIA RLL+RVRD+A+V     +
Sbjct: 180 FYNDEELKEIIVRSSSILDIDIDEDAALEIAMRSRGTPRIANRLLKRVRDYADVKGRGIV 239

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
             + A  AL  L +D  GFD +D + +  I  NF GGPVGIET+S  + E  D IED+ E
Sbjct: 240 NLDSAKKALNLLEVDDEGFDSIDNKIIQAIVNNFAGGPVGIETLSYFVGEEIDTIEDVYE 299

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           PY++Q+GFI RTPRGR+    A++HL + 
Sbjct: 300 PYLLQKGFIMRTPRGRMATKKAYEHLKVP 328


>gi|147673267|ref|YP_001217379.1| Holliday junction DNA helicase RuvB [Vibrio cholerae O395]
 gi|172047658|sp|A5F760|RUVB_VIBC3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|146315150|gb|ABQ19689.1| Holliday junction DNA helicase RuvB [Vibrio cholerae O395]
 gi|227013743|gb|ACP09953.1| Holliday junction DNA helicase RuvB [Vibrio cholerae O395]
          Length = 334

 Score =  374 bits (961), Expect = e-102,   Method: Composition-based stats.
 Identities = 187/333 (56%), Positives = 246/333 (73%), Gaps = 3/333 (0%)

Query: 1   MMDREGLL---SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M++ + L+   S +   E+     +RP+ L ++ GQ      +++FI+AA+ R EALDH+
Sbjct: 1   MIEADRLIAPISNHFKDEEVIDRAIRPKKLADYQGQDHVRDQMEIFIQAAQMRQEALDHL 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRL
Sbjct: 61  LIFGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           S +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI 
Sbjct: 121 SPMVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIV 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            RL +Y++ DL+ IVQR A+  GL++  E A E+A R+RGTPRI  RLLRRVRD+AEV  
Sbjct: 181 QRLEYYKVADLQHIVQRSAQCLGLSMDSEGALEVARRARGTPRIVNRLLRRVRDYAEVKG 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
              I  + AD AL  L +D  GFD +D + L  I   F GGPVGI+ ++A + E +D IE
Sbjct: 241 DGHICAQTADRALNMLDVDHQGFDYMDRKLLLAIMEKFSGGPVGIDNLAAAIGEEKDTIE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           D++EP++IQQG++QRTPRGR+    A+ H GI+
Sbjct: 301 DVLEPFLIQQGYLQRTPRGRIATDRAYLHFGIE 333


>gi|332305759|ref|YP_004433610.1| Holliday junction DNA helicase RuvB [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332173088|gb|AEE22342.1| Holliday junction DNA helicase RuvB [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 335

 Score =  374 bits (961), Expect = e-102,   Method: Composition-based stats.
 Identities = 191/332 (57%), Positives = 249/332 (75%), Gaps = 1/332 (0%)

Query: 1   MMDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+     +ED  I   +RP+ L ++TGQ   C  + +FI AA+ R++ALDH+L 
Sbjct: 1   MIEADRLIQPTAIREDEVIDRAIRPKMLADYTGQDHVCEQMDIFIRAARKRSDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GV+ ++TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVSIKTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPAMED+QLD+M+GEGP+ARS+K+ L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKLELPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY I+DL  IV+R A+   L + ++ A EIA RSRGTPRI+ RLLRRVRD+AE+    
Sbjct: 181 LEFYNIKDLTQIVKRSAEFLALDLAEDGAIEIAKRSRGTPRISNRLLRRVRDYAEIKSDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I+ ++A AAL  L +DK GFD +D + LT I   F GGPVG++ ++A + E RD IED+
Sbjct: 241 KISSQVASAALDMLDVDKEGFDYMDRKLLTTIIEKFMGGPVGLDNLAAAIGEERDTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           IEP++IQQGF+QRTPRGR++   A+ H G D 
Sbjct: 301 IEPFLIQQGFLQRTPRGRIVSQRAYLHFGFDY 332


>gi|295102070|emb|CBK99615.1| Holliday junction DNA helicase, RuvB subunit [Faecalibacterium
           prausnitzii L2-6]
          Length = 351

 Score =  374 bits (961), Expect = e-102,   Method: Composition-based stats.
 Identities = 170/327 (51%), Positives = 233/327 (71%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           ++   ++  D++ + LRP+ LE++ GQ +   NLK+++EAAK R E +DH+L  GPPGLG
Sbjct: 12  MMQPGMTAADSEENNLRPQHLEDYIGQEKVKQNLKIYLEAAKRRGEPMDHILLYGPPGLG 71

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTTLA ++A E+GV  R TSGP I K GDLAALLTNL++ DVLFIDEIHRLS  VEE+LY
Sbjct: 72  KTTLAGIIANEMGVQIRITSGPAIEKPGDLAALLTNLQEGDVLFIDEIHRLSRQVEEVLY 131

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           PA+ED+ LD+M+G+GPSA+S++INL RFTL+ ATTR G +T PL+DRFG+ ++L  Y  +
Sbjct: 132 PALEDYALDIMIGKGPSAQSIRINLPRFTLVGATTRAGQITGPLRDRFGVLLKLELYSPD 191

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +L  I+ R A +    +T E A E+A  SRGTPR+A R L+RVRDFA V     I R++A
Sbjct: 192 ELSNIIIRSAGILDQPITPEGAYELAKCSRGTPRVANRFLKRVRDFATVLGDGVIDRDVA 251

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
             +L R+ +D +G D+LD   L  I   + GGPVG+ET++A L E    +EDL EPY++Q
Sbjct: 252 LLSLKRMDVDALGLDELDRSLLRAIIEMYNGGPVGLETLAAALGEEAVTLEDLCEPYLMQ 311

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            GF+ RTPRGR    +A++HLG+  P 
Sbjct: 312 MGFLTRTPRGRCATRLAYEHLGLKAPE 338


>gi|313888445|ref|ZP_07822112.1| Holliday junction DNA helicase RuvB [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845474|gb|EFR32868.1| Holliday junction DNA helicase RuvB [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 333

 Score =  374 bits (961), Expect = e-102,   Method: Composition-based stats.
 Identities = 177/330 (53%), Positives = 235/330 (71%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M++  L+   +   DA    LRP+ LEE+ GQ +   NLK+FIEAAK R+E LDH L  G
Sbjct: 1   MEKNRLVEPELIDGDAREVSLRPKWLEEYIGQEKVVKNLKIFIEAAKNRSEPLDHTLLSG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+GVN + TSGP I K GDLA++LTNL + DVLFIDEIHRL+  V
Sbjct: 61  PPGLGKTTLAGIIANEMGVNLKVTSGPAIEKQGDLASILTNLNNDDVLFIDEIHRLNKSV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILYPAMED  LD+++G+GPSARS++++L+ FTLI ATTR G+LT+PL+DRFG+ ++L+
Sbjct: 121 EEILYPAMEDHALDIIIGKGPSARSIRLDLAPFTLIGATTRAGMLTSPLRDRFGVMLKLD 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
            Y+ + L  I+ R AK+  + + +E A EIA RSRGTPRIA RLL+RVRD+AEV     I
Sbjct: 181 LYDTKSLVEIIMRSAKILNVPIEEEGALEIARRSRGTPRIANRLLKRVRDYAEVKEGGVI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T ++A   L  L IDK G D +D R +  +   F G PVGI+ ISA + E +  +ED+ E
Sbjct: 241 TTKVAIKGLNLLEIDKFGLDNIDRRIILTMIEKFNGRPVGIDAISAAIGEDKGTVEDVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           PY++Q GFI RTPRGR+    A+ H G++ 
Sbjct: 301 PYLMQIGFIIRTPRGRMTTKRAYDHFGLEY 330


>gi|167721175|ref|ZP_02404411.1| Holliday junction DNA helicase B [Burkholderia pseudomallei DM98]
          Length = 356

 Score =  374 bits (961), Expect = e-102,   Method: Composition-based stats.
 Identities = 196/331 (59%), Positives = 246/331 (74%), Gaps = 2/331 (0%)

Query: 5   EGLL--SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           E ++  +   S E+A    LRPR L+E+ GQ +    L++FIEAAK R+EALDHVL  GP
Sbjct: 10  ERIIAATPASSHEEAFERALRPRQLDEYVGQEKVRGQLEIFIEAAKRRSEALDHVLLFGP 69

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++ARE+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VE
Sbjct: 70  PGLGKTTLAHIIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVE 129

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILYPA+ED+Q+D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL F
Sbjct: 130 EILYPALEDYQIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEF 189

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y+ E L  IV+R A L    +    A EIA RSRGTPRIA RLLRRVRD+AEV     IT
Sbjct: 190 YDAEQLSRIVRRSAALLNAQIDPAGALEIAKRSRGTPRIANRLLRRVRDYAEVKADGNIT 249

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             +ADAAL  L +D +GFD +D + L  I   F GGPVG++ ++A + E RD IED++EP
Sbjct: 250 AAVADAALAMLDVDPVGFDLMDRKLLEAILHKFDGGPVGVDNLAAAIGEERDTIEDVLEP 309

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           Y+IQQGF+QRTPRGR+   + ++H G+  P 
Sbjct: 310 YLIQQGFLQRTPRGRVATLLTYRHFGLSAPD 340


>gi|114771192|ref|ZP_01448612.1| Holliday junction DNA helicase B [alpha proteobacterium HTCC2255]
 gi|114548117|gb|EAU51004.1| Holliday junction DNA helicase B [alpha proteobacterium HTCC2255]
          Length = 347

 Score =  374 bits (961), Expect = e-102,   Method: Composition-based stats.
 Identities = 213/333 (63%), Positives = 267/333 (80%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M+D +  L      +D D   LRP+ L +FTGQ EA +NLKVFIE+AK R +A+DH LF 
Sbjct: 4   MIDPDPNLRPEPLVDDVD-RALRPQNLNDFTGQAEARANLKVFIESAKKRGQAMDHTLFY 62

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++++ELGVNFR TSGPV+AKAGDLAA+LTNLE+RDVLFIDEIHRL+ +
Sbjct: 63  GPPGLGKTTLAQIISKELGVNFRMTSGPVLAKAGDLAAILTNLEERDVLFIDEIHRLNPV 122

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPA+EDF+LDLM+GEGP+ARSV+I+L  FTL+ ATTR+GLLT PL+DRFGIP RL
Sbjct: 123 VEEVLYPALEDFELDLMIGEGPAARSVRIDLQPFTLVGATTRLGLLTTPLRDRFGIPTRL 182

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY +++L  IV+RGA+L G+  + + A EIA R+RGTPRIAGRLLRRV DFA V    T
Sbjct: 183 EFYTVDELCLIVERGARLMGIEASADGAKEIARRARGTPRIAGRLLRRVVDFATVEGNGT 242

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I++E+AD +L RL +D +G D  D RYL M+A N+ GGPVGIETI+A LSE RDAIE+++
Sbjct: 243 ISKELADNSLTRLGVDDLGLDGADRRYLRMVAENYAGGPVGIETIAAALSESRDAIEEVV 302

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EP+++QQG IQRTPRGR+L   AW HLG+  P 
Sbjct: 303 EPFLLQQGLIQRTPRGRMLGQKAWSHLGMRAPK 335


>gi|218133571|ref|ZP_03462375.1| hypothetical protein BACPEC_01438 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990946|gb|EEC56952.1| hypothetical protein BACPEC_01438 [Bacteroides pectinophilus ATCC
           43243]
          Length = 332

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 175/329 (53%), Positives = 239/329 (72%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M+R  + + +  +++   + LRP  LEE+ GQ    SNLKV+IEAA+ R + LDHVL  G
Sbjct: 1   MERRVISTESFVEDEKLENSLRPMKLEEYIGQERVKSNLKVYIEAARNRKDVLDHVLLYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA +++ E+G N + TSGP I K G++AA+L NL + DVLF+DEIHRL+  V
Sbjct: 61  PPGLGKTTLASIISNEMGTNLKVTSGPAIEKPGEMAAILNNLNEGDVLFVDEIHRLNRQV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMEDF +D+++G+G SARS++++L  FTL+ ATTR GLLT PL+DRFG+   L 
Sbjct: 121 EEVLYPAMEDFAIDIVIGKGASARSIRLDLPHFTLVGATTRAGLLTAPLRDRFGVVSHLE 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY  E+L+ I++R A++ G+ + +E A E+A RSRGTPR+A R+L+RVRDFA+V +   I
Sbjct: 181 FYTTEELERIIRRSAQVLGVEIDEEGAHELARRSRGTPRLANRMLKRVRDFAQVRYDGRI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           TRE+AD AL  + +DK G D+ D   L+ I   FGGGPVGIETI+A + E    +ED+ E
Sbjct: 241 TREVADYALNLMDVDKDGLDRNDRLILSTIINKFGGGPVGIETIAAAVGEDAGTLEDVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           PY++Q GFI RTPRGR+    A+  LGID
Sbjct: 301 PYLVQNGFINRTPRGRMASVHAYDCLGID 329


>gi|317057203|ref|YP_004105670.1| Holliday junction DNA helicase RuvB [Ruminococcus albus 7]
 gi|315449472|gb|ADU23036.1| Holliday junction DNA helicase RuvB [Ruminococcus albus 7]
          Length = 345

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 180/331 (54%), Positives = 240/331 (72%), Gaps = 3/331 (0%)

Query: 2   MDREGLLSRNVSQEDADIS---LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
            D E L+S   ++++        LRP TL E+ GQ +   N+K++I+AAK R ++LDHVL
Sbjct: 7   FDYERLVSPKETEQETTDDFEISLRPLTLAEYIGQEKVKENMKIYIDAAKRRGDSLDHVL 66

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA ++A E+GVN R+TSGP I K GDLAALLTNLE  DVLFIDEIHRLS
Sbjct: 67  LYGPPGLGKTTLANIIAHEMGVNIRTTSGPAIEKPGDLAALLTNLEKGDVLFIDEIHRLS 126

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
             VEEILYPAMED+ LD+++G+GP+ARS++I L++FTLI ATTR G L+ PL+DRFG+ +
Sbjct: 127 RQVEEILYPAMEDYALDIIMGKGPAARSIRIELNKFTLIGATTRSGQLSAPLRDRFGMLM 186

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
            +  Y +E+L  IV+R A + G++  D+ A EIA R+R TPRIA R L+RVRDFAEV   
Sbjct: 187 HMEMYSVEELADIVKRSATILGVSCDDDGATEIAARARCTPRIANRYLKRVRDFAEVIGN 246

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             IT++IA  AL R+ +DK+G D LD R L MI + + GGPVG+ T++A + E    +ED
Sbjct: 247 GRITQDIAKIALNRMEVDKLGLDSLDRRLLEMIIKGYNGGPVGLSTLAAAIGEEAVTLED 306

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           + EPY++Q GF+ +TPRGR    +A+ HLGI
Sbjct: 307 VCEPYLMQLGFLAKTPRGRCATQLAYDHLGI 337


>gi|196250112|ref|ZP_03148806.1| Holliday junction DNA helicase RuvB [Geobacillus sp. G11MC16]
 gi|196210296|gb|EDY05061.1| Holliday junction DNA helicase RuvB [Geobacillus sp. G11MC16]
          Length = 333

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 178/333 (53%), Positives = 237/333 (71%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD   +    +  E A    LRP+ L E+ GQ +   NL+VFIEAAK R E LDHVL  G
Sbjct: 1   MDERLVSGSALGGEAAFEPTLRPQYLHEYIGQDKVKENLQVFIEAAKLREETLDHVLLYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+GV  R+TSGP + + GDLAALLT+LE  DVLFIDEIHRL   V
Sbjct: 61  PPGLGKTTLAAIIANEMGVKMRATSGPALERPGDLAALLTSLEPGDVLFIDEIHRLPRTV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMED+ LD+ VG+GP ARS++++L  FTL+ ATTR G L+ PL+DRFG+  RL 
Sbjct: 121 EEVLYPAMEDYCLDITVGKGPEARSLRLDLPPFTLVGATTRAGALSAPLRDRFGVISRLE 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y+++ L  I++R A +  + + +EAA E+A R+RGTPRIA RLLRRVRDFA+V+    I
Sbjct: 181 YYQVDQLAQIIERAAAILHIIINNEAALELARRARGTPRIANRLLRRVRDFAQVSGDGEI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T  +A  AL RL +D++G D +D + L  I   F GGPVG+ET++A + E    IE++ E
Sbjct: 241 TLPLAVEALERLQVDRLGLDHIDHKLLLAIIEKFAGGPVGLETMAAVIGEEAQTIEEVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           PY++Q G +QRTPRGR+  P A+ HLG+++P R
Sbjct: 301 PYLLQIGLLQRTPRGRVATPAAYAHLGMEVPKR 333


>gi|296134720|ref|YP_003641962.1| Holliday junction DNA helicase RuvB [Thiomonas intermedia K12]
 gi|295794842|gb|ADG29632.1| Holliday junction DNA helicase RuvB [Thiomonas intermedia K12]
          Length = 352

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 193/322 (59%), Positives = 240/322 (74%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
            QE      LRP+ L+++ GQ      L +FI AA+ R EALDHVL  GPPGLGKTTLA 
Sbjct: 23  PQEAVAERALRPQQLDDYVGQARVREQLDIFIGAARKREEALDHVLLFGPPGLGKTTLAH 82

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           +VARE+GVN RSTSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+
Sbjct: 83  IVAREMGVNLRSTSGPVLERAGDLAALLTNLERNDVLFIDEIHRLSPVVEEILYPALEDY 142

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           Q+D+++GEGP ARSVKI+L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  E+L  IV
Sbjct: 143 QIDILIGEGPGARSVKIDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTAEELTRIV 202

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R AKL G  +  + A EIA R+RGTPRIA RLLRRVRD+A++  A  I+ E+ADAAL  
Sbjct: 203 LRSAKLLGAVIDPDGAVEIARRARGTPRIANRLLRRVRDYADMKAAGRISAEVADAALRM 262

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D +GFD +D + L  +   F GGPVG++ ++A + E RD IED+IEPY+IQQG++QR
Sbjct: 263 LDVDSLGFDVMDRKLLEAVVHRFDGGPVGLDNLAAAIGEERDTIEDVIEPYLIQQGYLQR 322

Query: 313 TPRGRLLMPIAWQHLGIDIPHR 334
           TPRGR+     + HLG+  P R
Sbjct: 323 TPRGRIATAATYAHLGLAAPQR 344


>gi|117617467|ref|YP_858103.1| Holliday junction DNA helicase RuvB [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|166231459|sp|A0KPA2|RUVB_AERHH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|117558874|gb|ABK35822.1| Holliday junction DNA helicase RuvB [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 336

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 188/334 (56%), Positives = 247/334 (73%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S +   +E+     +RP+ L ++TGQ   C  +++FI AA+ R EALDH+L 
Sbjct: 1   MIEADRLISASGGREEEVIDRAIRPKLLADYTGQDPVCEQMEIFIAAARQRGEALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN ++TSGPV+ KAGDLAALLTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNIKTTSGPVLEKAGDLAALLTNLEPNDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY ++DL  IV R A+  GL +T++ A E+A RSRGTPRIA RLLRRVRDFA+V    
Sbjct: 181 LEFYNVKDLTDIVARSARCLGLDMTEDGALEVARRSRGTPRIANRLLRRVRDFAQVKSDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I   IA  A+  L +D  GFD +D + L  +   F GGPVG++ ++A + E +D IED+
Sbjct: 241 RIDGPIAARAMDMLDVDNEGFDFMDRKLLLAVIDKFLGGPVGLDNLAAAIGEEKDTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +EPY+IQQG++QRTPRGR+  P A+ H G+  P 
Sbjct: 301 LEPYLIQQGYLQRTPRGRIATPRAYAHFGLQRPD 334


>gi|295706728|ref|YP_003599803.1| holliday junction DNA helicase RuvB [Bacillus megaterium DSM 319]
 gi|294804387|gb|ADF41453.1| holliday junction DNA helicase RuvB [Bacillus megaterium DSM 319]
          Length = 333

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 177/333 (53%), Positives = 245/333 (73%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD   +    + +E+     LRP+TL+++ GQ +  S+L +FI+AAK R+E LDHVL  G
Sbjct: 1   MDDRIVTGDVLGEEEIIEQSLRPQTLQQYIGQHKVKSHLDIFIKAAKMRSETLDHVLLYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+GV  R+TSGP I + GDLAA+LT+LE  DVLFIDEIHRL+  V
Sbjct: 61  PPGLGKTTLATIIANEMGVQIRTTSGPAIERPGDLAAVLTSLEPGDVLFIDEIHRLNRSV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTR GLL++PL+DRFG+  RL 
Sbjct: 121 EEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGLLSSPLRDRFGVLSRLE 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y+ EDL +IV+R A +  + + ++A  E+A R+RGTPRIA RLLRRVRDFA+V     I
Sbjct: 181 YYQEEDLASIVERTAAILDVEIDEKATFEMARRARGTPRIANRLLRRVRDFAQVKGDGAI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T  +A+ AL  L +D++G D +D + L  I   F GGPVG++TISA + E    IED+ E
Sbjct: 241 TERLANEALEMLQVDRLGLDHIDHKLLRGIIEKFRGGPVGLDTISATIGEESHTIEDVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           PY++Q GF+QRTPRGR++ P+ + H  +++P +
Sbjct: 301 PYLLQIGFLQRTPRGRIVTPLVYGHFQLEVPDQ 333


>gi|58581286|ref|YP_200302.1| Holliday junction DNA helicase RuvB [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84623204|ref|YP_450576.1| Holliday junction DNA helicase B [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|166712988|ref|ZP_02244195.1| Holliday junction DNA helicase B [Xanthomonas oryzae pv. oryzicola
           BLS256]
 gi|188577433|ref|YP_001914362.1| Holliday junction DNA helicase RuvB [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|289661902|ref|ZP_06483483.1| Holliday junction DNA helicase RuvB [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|289666993|ref|ZP_06488068.1| Holliday junction DNA helicase RuvB [Xanthomonas campestris pv.
           musacearum NCPPB4381]
 gi|81311909|sp|Q5H2A4|RUVB_XANOR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|97190463|sp|Q2P575|RUVB_XANOM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|238689461|sp|B2STK0|RUVB_XANOP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|58425880|gb|AAW74917.1| holliday junction binding protein DNA helicase [Xanthomonas oryzae
           pv. oryzae KACC10331]
 gi|84367144|dbj|BAE68302.1| holliday junction binding protein DNA helicase [Xanthomonas oryzae
           pv. oryzae MAFF 311018]
 gi|188521885|gb|ACD59830.1| holliday junction DNA helicase RuvB [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 345

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 193/332 (58%), Positives = 247/332 (74%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD+  + S +  ++DA  + +RP+ L ++ GQ      ++++I+AAKAR EA+DHVL  G
Sbjct: 1   MDQRIIASSSTREDDAADASIRPKRLADYLGQQPVREQMEIYIQAAKARGEAMDHVLIFG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTL+ V+A ELGV+ R TSGPVI KAGDLAALLTNL+  DVLFIDEIHRLS +V
Sbjct: 61  PPGLGKTTLSHVIANELGVSLRVTSGPVIEKAGDLAALLTNLQPHDVLFIDEIHRLSPVV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMEDFQ+D+M+G+GP+ARS+KI+L  FTLI ATTR GLLT PL+DRFGI  RL 
Sbjct: 121 EEVLYPAMEDFQIDIMIGDGPAARSIKIDLPPFTLIGATTRAGLLTAPLRDRFGIVQRLE 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY  ++L  IV R A + G+  T E A EIA R+RGTPRIA RLLRRVRD+A+V  A  I
Sbjct: 181 FYSPQELTRIVIRSAAILGIDCTPEGAAEIARRARGTPRIANRLLRRVRDYAQVKAAGHI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
              +A AA+  L +D  GFD+LD R L  I  +F GGPVG+E+++A LSE R  +ED+IE
Sbjct: 241 DLPVAQAAMQMLKVDPEGFDELDRRMLRTIVEHFDGGPVGVESLAASLSEERGTLEDVIE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           PY+IQQGF+ RT RGR++   A+ HLG+  P 
Sbjct: 301 PYLIQQGFLIRTARGRMVTTKAYLHLGLKPPR 332


>gi|312962758|ref|ZP_07777246.1| Holliday junction ATP-dependent DNA helicase [Pseudomonas
           fluorescens WH6]
 gi|311282975|gb|EFQ61568.1| Holliday junction ATP-dependent DNA helicase [Pseudomonas
           fluorescens WH6]
          Length = 352

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 190/336 (56%), Positives = 249/336 (74%), Gaps = 2/336 (0%)

Query: 1   MMDREGLLSRN--VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M++ + L++      +E+     +RP +L ++ GQ      +++FI+AA+ R+E+LDH L
Sbjct: 1   MIEADRLIAATGPRDREEVQDRAIRPLSLADYIGQPTVREQMELFIQAARGRSESLDHTL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA ++A+E+GV+ +STSGPV+ + GDLAALLTNLE  DVLFIDEIHRLS
Sbjct: 61  IFGPPGLGKTTLANIIAQEMGVSIKSTSGPVLERPGDLAALLTNLEPHDVLFIDEIHRLS 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            IVEE+LYPAMEDFQLD+M+GEGP+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  
Sbjct: 121 PIVEEVLYPAMEDFQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQ 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           RL FY   DL TIV R A + GL +  E A EIA R+RGTPRIA RLLRRVRDFAEV   
Sbjct: 181 RLEFYSTADLATIVSRSASILGLPLDPEGAFEIARRARGTPRIANRLLRRVRDFAEVRAK 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             IT+ +AD AL  L +D+ GFD  D R L  +   F GGPVG+++++A +SE R  IED
Sbjct: 241 GHITKAVADLALNLLDVDEHGFDHQDRRLLLTMIEKFDGGPVGVDSLAAAISEERHTIED 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           ++EPY+IQQG+I RTPRGR++   A+ H G++IP R
Sbjct: 301 VLEPYLIQQGYIMRTPRGRVVTRHAYLHFGLNIPSR 336


>gi|225568079|ref|ZP_03777104.1| hypothetical protein CLOHYLEM_04152 [Clostridium hylemonae DSM
           15053]
 gi|225163032|gb|EEG75651.1| hypothetical protein CLOHYLEM_04152 [Clostridium hylemonae DSM
           15053]
          Length = 335

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 172/330 (52%), Positives = 239/330 (72%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M +  + + N+ ++    + LRP+ L ++ GQ +A   LK++IEAAK R EALDHVLF G
Sbjct: 1   MSKRIITTENLEEDIKIENNLRPQLLTDYIGQEKAKETLKIYIEAAKERGEALDHVLFYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+ VN + TSGP I K G++AA+L NL++ DVLF+DEIHRL+  V
Sbjct: 61  PPGLGKTTLAGIIANEMNVNMKITSGPAIEKPGEMAAILNNLQEGDVLFVDEIHRLNRQV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMEDF +D+M+G+G +ARS++++L RFTL+ ATTR G+LT PL+DRFG+  RL 
Sbjct: 121 EEVLYPAMEDFAIDIMIGKGATARSIRLDLPRFTLVGATTRAGMLTAPLRDRFGVVNRLE 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY   +LKTI+ R A++  + + +  A  +A RSRGTPR+A RLL+RVRDFA+V +   I
Sbjct: 181 FYTAGELKTIILRSAQVLEVGIDERGADALARRSRGTPRLANRLLKRVRDFAQVKYDGYI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T E+A+ AL  L +DK G DQ D   L  +   F GGPVG++T++A + E    IED+ E
Sbjct: 241 TEEVANYALDLLDVDKEGLDQTDRGLLLTMIDKFQGGPVGLDTLAAAVGEDAGTIEDVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           PY+++ GFIQRTPRGR++   A +HLGI +
Sbjct: 301 PYLLKNGFIQRTPRGRVVTEAACRHLGISM 330


>gi|301155729|emb|CBW15197.1| ATP-dependent DNA helicase, component of RuvABC resolvasome
           [Haemophilus parainfluenzae T3T1]
          Length = 322

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 187/319 (58%), Positives = 239/319 (74%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
            ED     +RP+ L ++ GQ +    + +FI+AAK R +ALDH+L  GPPGLGKTTLA +
Sbjct: 2   DEDVIDRAIRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLIFGPPGLGKTTLANI 61

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS  +EE+LYPAMED+Q
Sbjct: 62  VANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQ 121

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           LD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  RL FY +EDL +IV 
Sbjct: 122 LDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVT 181

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A    L + D+AA E+A RSRGTPRIA RLLRRVRDFA+V +   I+ +IA  AL  L
Sbjct: 182 RSASCLNLELEDKAAFEVARRSRGTPRIANRLLRRVRDFADVRNDGIISADIAKQALSML 241

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D  GFD LD + LT +   F GGPVG++ ++A + E RD IED++EPY+IQQGF+QRT
Sbjct: 242 DVDDAGFDYLDRKLLTAVIERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRT 301

Query: 314 PRGRLLMPIAWQHLGIDIP 332
           PRGR+   + ++H G+  P
Sbjct: 302 PRGRIATSLTYRHFGLQKP 320


>gi|21232453|ref|NP_638370.1| Holliday junction DNA helicase RuvB [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|24212374|sp|Q8P6E7|RUVB_XANCP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|21114235|gb|AAM42294.1| holliday junction binding protein, DNA helicase [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
          Length = 346

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 192/333 (57%), Positives = 247/333 (74%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M ++  + S    +++A  + +RP+ L ++ GQ      ++++I+AAKAR EA+DHVL  
Sbjct: 1   MTEQRTIASSATREDEAADASIRPKRLADYLGQQPVRDQMEIYIQAAKARGEAMDHVLIF 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTL+ V+A ELGV+ R TSGPVI KAGDLAALLTNL+  DVLFIDEIHRLS +
Sbjct: 61  GPPGLGKTTLSHVIANELGVSLRVTSGPVIEKAGDLAALLTNLQPHDVLFIDEIHRLSPV 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDFQ+D+M+G+GP+ARS+KI+L  FTLI ATTR GLLT PL+DRFGI  RL
Sbjct: 121 VEEVLYPAMEDFQIDIMIGDGPAARSIKIDLPPFTLIGATTRAGLLTAPLRDRFGIVQRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  ++L  IV R A + G+  T + A EIA R+RGTPRIA RLLRRVRDFA+V  A  
Sbjct: 181 EFYSPQELTRIVIRSAAILGIDCTPDGAAEIARRARGTPRIANRLLRRVRDFAQVKAAGH 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I   +A AA+  L +D  GFD+LD R L  I  +F GGPVG+E+++A LSE R  +ED+I
Sbjct: 241 IDLTVAQAAMQMLKVDPEGFDELDRRMLRTIVDHFDGGPVGVESLAASLSEERGTLEDVI 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY+IQQGF+ RT RGR++ P A+ HLG+  P 
Sbjct: 301 EPYLIQQGFLIRTARGRMVTPKAYLHLGLKPPR 333


>gi|298244052|ref|ZP_06967859.1| Holliday junction DNA helicase RuvB [Ktedonobacter racemifer DSM
           44963]
 gi|297557106|gb|EFH90970.1| Holliday junction DNA helicase RuvB [Ktedonobacter racemifer DSM
           44963]
          Length = 344

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 171/330 (51%), Positives = 235/330 (71%), Gaps = 1/330 (0%)

Query: 4   REGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
            + L+S N+S E+  +   LRPR L E+ GQ +   NL + +EAA+ R E +DHVL  GP
Sbjct: 2   SDRLVSPNISDEEQILEGSLRPRRLAEYIGQEKIKENLGILLEAARRRNEPVDHVLLYGP 61

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTL  ++A E+GVN ++T+GP I  AGDLA++LT+L+  +VLFIDE+HRL+  VE
Sbjct: 62  PGLGKTTLCNIIAAEMGVNLKTTAGPAIEHAGDLASILTSLQPGEVLFIDEVHRLARAVE 121

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E LY AMEDF LD+++G+GPSARS++++L  FT++ ATTRVG LT PL+DRFG   R+ +
Sbjct: 122 ERLYSAMEDFALDVVIGKGPSARSLRLSLPPFTVVGATTRVGSLTAPLRDRFGAIYRMEY 181

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y+I  L+ IV R A +  +   +    EIA R+RGTPRI  RLL+RVRD+A+V     IT
Sbjct: 182 YDITSLEMIVHRSAGILKVPADEGGIKEIAGRARGTPRIVNRLLKRVRDYAQVRADGVIT 241

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           RE+A+ AL  L +D++G DQ D   LT I + F GGPVG++T++A  SE  + IED+ EP
Sbjct: 242 REVANRALDALEVDEIGLDQTDRNMLTTIIQKFNGGPVGLDTLAASTSEDSETIEDVYEP 301

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           Y++Q GFI RTPRGR+ M  A++HLG+  P
Sbjct: 302 YLLQLGFIARTPRGRVAMRAAYEHLGLTPP 331


>gi|170699605|ref|ZP_02890644.1| Holliday junction DNA helicase RuvB [Burkholderia ambifaria
           IOP40-10]
 gi|170135487|gb|EDT03776.1| Holliday junction DNA helicase RuvB [Burkholderia ambifaria
           IOP40-10]
          Length = 354

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 194/331 (58%), Positives = 245/331 (74%), Gaps = 2/331 (0%)

Query: 5   EGLL--SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           E ++  + + S E+     LRPR L+++ GQ +    L++FIEAAK R+E LDHVL  GP
Sbjct: 10  ERIIAATPSSSHEEVFERALRPRQLDDYVGQEKVRGQLEIFIEAAKRRSEPLDHVLLFGP 69

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++ARE+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VE
Sbjct: 70  PGLGKTTLAHIIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVE 129

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILYPA+ED+Q+D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL F
Sbjct: 130 EILYPALEDYQIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEF 189

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y+ + L  IV+R A L    +    A EIA RSRGTPRIA RLLRRVRDFAEV     IT
Sbjct: 190 YDADQLARIVRRSASLLNAHIDPNGALEIAKRSRGTPRIANRLLRRVRDFAEVKADGQIT 249

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             +ADAAL  L +D +GFD +D + L  I   F GGPVGI+ ++A + E RD IED++EP
Sbjct: 250 AAVADAALAMLDVDPVGFDLMDRKLLEAILHKFDGGPVGIDNLAAAIGEERDTIEDVLEP 309

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           Y+IQQGF+QRTPRGR+   + ++H G+  P 
Sbjct: 310 YLIQQGFLQRTPRGRVATLLTYRHFGLSAPD 340


>gi|161525865|ref|YP_001580877.1| Holliday junction DNA helicase RuvB [Burkholderia multivorans ATCC
           17616]
 gi|189349414|ref|YP_001945042.1| Holliday junction DNA helicase RuvB [Burkholderia multivorans ATCC
           17616]
 gi|221202297|ref|ZP_03575331.1| Holliday junction DNA helicase RuvB [Burkholderia multivorans
           CGD2M]
 gi|221209111|ref|ZP_03582105.1| Holliday junction DNA helicase RuvB [Burkholderia multivorans CGD2]
 gi|221214502|ref|ZP_03587473.1| Holliday junction DNA helicase RuvB [Burkholderia multivorans CGD1]
 gi|238687039|sp|A9AH73|RUVB_BURM1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|160343294|gb|ABX16380.1| Holliday junction DNA helicase RuvB [Burkholderia multivorans ATCC
           17616]
 gi|189333436|dbj|BAG42506.1| holliday junction DNA helicase [Burkholderia multivorans ATCC
           17616]
 gi|221165759|gb|EED98234.1| Holliday junction DNA helicase RuvB [Burkholderia multivorans CGD1]
 gi|221171015|gb|EEE03468.1| Holliday junction DNA helicase RuvB [Burkholderia multivorans CGD2]
 gi|221177871|gb|EEE10284.1| Holliday junction DNA helicase RuvB [Burkholderia multivorans
           CGD2M]
          Length = 355

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 195/331 (58%), Positives = 243/331 (73%), Gaps = 2/331 (0%)

Query: 5   EGLL--SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           E ++  +   S E+     LRPR L+++ GQ +    L++FIEAAK R E LDHVL  GP
Sbjct: 10  ERIIAATPASSHEEVFERALRPRQLDDYVGQEKVRGQLEIFIEAAKRRREPLDHVLLFGP 69

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++ARE+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VE
Sbjct: 70  PGLGKTTLAHIIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVE 129

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILYPA+ED+Q+D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL F
Sbjct: 130 EILYPALEDYQIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEF 189

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y+ + L  IVQR A L    +    A EIA RSRGTPRIA RLLRRVRD+AEV     IT
Sbjct: 190 YDADQLSRIVQRSASLLNAQIDPNGALEIAKRSRGTPRIANRLLRRVRDYAEVKADGQIT 249

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             IADAAL  L +D +GFD +D + L  I   F GGPVGI+ ++A + E RD IED++EP
Sbjct: 250 AAIADAALAMLDVDPVGFDLMDRKLLEAILHKFDGGPVGIDNLAAAIGEERDTIEDVLEP 309

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           Y+IQQGF+QRTPRGR+   + ++H G+  P 
Sbjct: 310 YLIQQGFLQRTPRGRVATLLTYRHFGLAAPD 340


>gi|94501015|ref|ZP_01307539.1| Holliday junction DNA helicase RuvB [Oceanobacter sp. RED65]
 gi|94426762|gb|EAT11746.1| Holliday junction DNA helicase RuvB [Oceanobacter sp. RED65]
          Length = 338

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 187/334 (55%), Positives = 245/334 (73%), Gaps = 4/334 (1%)

Query: 1   MMDREGLLSRN----VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH 56
           M++ +  +S       ++E      +RP  L ++ GQ +    +++FI AA+AR EALDH
Sbjct: 1   MIESDRFISAENPQLKAEEVHHDRAIRPTRLADYEGQPQVREQMEIFIGAARARQEALDH 60

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHR 116
            L  GPPGLGKTTLA ++A EL VN +STSGPV+ KAGDLAA+LTNLE+ DVLFIDEIHR
Sbjct: 61  SLIFGPPGLGKTTLANIIAHELDVNIKSTSGPVLEKAGDLAAMLTNLEEGDVLFIDEIHR 120

Query: 117 LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
           L+  VEE+LYPAMED+QLD+MVGEGP+ARS+KI+L  FTL+ ATTR GLLT+PL+DRFGI
Sbjct: 121 LNPSVEEVLYPAMEDYQLDIMVGEGPAARSIKIDLPPFTLVGATTRAGLLTSPLRDRFGI 180

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
             RL FY + DL  IV R A + G+ +  + A EIA RSRGTPRIA RLL+RVRD+A+V 
Sbjct: 181 VQRLEFYNVADLTGIVTRSAGMLGVEIDHKGAGEIAQRSRGTPRIANRLLKRVRDYAQVK 240

Query: 237 HAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAI 296
              T+T+ IAD AL  L +D  G D +D R L  +   FGGGPVG+++++A +SE RD I
Sbjct: 241 GDGTVTQNIADLALNMLHVDTHGLDHMDRRLLLAMIEKFGGGPVGVDSLAAAISEERDTI 300

Query: 297 EDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           ED++EPY+IQQGF+ RTPRGR++   A+ H G++
Sbjct: 301 EDVLEPYLIQQGFMMRTPRGRMVTENAYLHFGLE 334


>gi|239628225|ref|ZP_04671256.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239518371|gb|EEQ58237.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 335

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 168/327 (51%), Positives = 236/327 (72%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M+R  + +   ++++   + LRP+ L+++ GQ +  S LKV+IEAA+ R EALDHVLF G
Sbjct: 1   MERRIITTDVTAEDERIETTLRPQCLKDYVGQEKLKSTLKVYIEAARNRNEALDHVLFYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+G + + TSGP I K G++AA+L NL++ DVLF+DEIHRL+  V
Sbjct: 61  PPGLGKTTLAGIIANEMGSSMKVTSGPAIEKPGEMAAILNNLQEGDVLFVDEIHRLNRQV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMEDF +D+M+G+  +ARS++++L  FTL+ ATTR GLLT PL+DRFG+  RL 
Sbjct: 121 EEVLYPAMEDFAIDIMLGKDSTARSIRLDLPHFTLVGATTRAGLLTAPLRDRFGVVQRLE 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY  ++L TI+   A++ G+ + +  A E+A RSRGTPR+A RLL+RVRDFA+V +   I
Sbjct: 181 FYTPKELTTIILHSARVLGVEIEEAGALELARRSRGTPRLANRLLKRVRDFAQVKYDGVI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           TRE+ D AL  + +DK+G DQ D   L MI   F GGPVG++T++A L E    +E++ E
Sbjct: 241 TREVTDFALDIMDVDKLGLDQNDRNILLMIIEKFSGGPVGLDTLAAALGEDSGTLEEVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLG 328
           PY++  G I RTPRGR     A++HLG
Sbjct: 301 PYLLMNGLINRTPRGRTATESAYRHLG 327


>gi|171464162|ref|YP_001798275.1| Holliday junction DNA helicase RuvB [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171193700|gb|ACB44661.1| Holliday junction DNA helicase RuvB [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 356

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 190/329 (57%), Positives = 242/329 (73%), Gaps = 1/329 (0%)

Query: 5   EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           + ++S +    +A     LRP+ L E+ GQ +A + L++FI A +AR EALDHVL  GPP
Sbjct: 20  DRIVSGSAGNAEAVFERALRPKQLNEYVGQTKARAQLEIFISATRARQEALDHVLLFGPP 79

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++ARELGVN R TSGPV+ + GDLAALLTNLE+ DVLFIDEIHRLS +VEE
Sbjct: 80  GLGKTTLAHIIARELGVNLRQTSGPVLDRPGDLAALLTNLEENDVLFIDEIHRLSPVVEE 139

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILYPA+ED+ LD+M+GEGP+ARSVKI+L  FTLI ATTR G+LTNPL+DRFGI  RL FY
Sbjct: 140 ILYPALEDYSLDIMIGEGPAARSVKIDLKPFTLIGATTRAGMLTNPLRDRFGIVARLEFY 199

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
             ++L  I+ R   L    +  + + EIA R+RGTPRIA RLLRRVRD+AEV    TIT+
Sbjct: 200 TTKELTKIINRSTSLLKADIDPDGSIEIAKRARGTPRIANRLLRRVRDYAEVKGTGTITK 259

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
            +ADAAL  L +D  GFD +D + L  I   F GGPVGI+ ++A + E RD IED++EPY
Sbjct: 260 AMADAALKMLDVDPSGFDVMDRKLLEAILHKFDGGPVGIDNLAAAIGEERDTIEDVLEPY 319

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           +IQQG++QRT RGR+    A++H G+  P
Sbjct: 320 LIQQGYLQRTSRGRVATRQAYEHFGLTPP 348


>gi|126737219|ref|ZP_01752954.1| Holliday junction DNA helicase B [Roseobacter sp. SK209-2-6]
 gi|126721804|gb|EBA18507.1| Holliday junction DNA helicase B [Roseobacter sp. SK209-2-6]
          Length = 343

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 218/337 (64%), Positives = 258/337 (76%), Gaps = 3/337 (0%)

Query: 1   MMDREGLLSRNVSQED---ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M+D +  L      ED    +   LRP+ L EF GQ EA +NL+VFIE+A+ R EA+DH 
Sbjct: 1   MIDADPALRPEPLPEDGAGDNDRALRPQGLGEFIGQAEARANLRVFIESARRRGEAMDHT 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           LF GPPGLGKTTLAQ+VARELGVNFR TSGPV+AKAGDLAA+LTNLE RDVLFIDEIHRL
Sbjct: 61  LFHGPPGLGKTTLAQIVARELGVNFRMTSGPVLAKAGDLAAILTNLEARDVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           +  VEE+LYPAMEDF+LDL++GEGP+AR+V+I L  FTL+ ATTR+GLLT PL+DRFGIP
Sbjct: 121 NPAVEEVLYPAMEDFELDLVIGEGPAARTVRIELQPFTLVGATTRMGLLTTPLRDRFGIP 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            RL FY I++L  IV R A+  G    D  A EIA R+RGTPRIAGRLLRRV DFA V  
Sbjct: 181 TRLQFYTIDELHEIVTRNARKLGAPADDAGAREIARRARGTPRIAGRLLRRVVDFAVVEG 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
              ITRE+AD AL RL +D +G D  D RYL +IA N+ GGPVGIET+SA LSE RDA+E
Sbjct: 241 DGKITRELADGALTRLGVDNLGLDGADRRYLNLIAENYSGGPVGIETLSAALSESRDALE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           ++IEPY++QQG IQRTPRGR+L   AW HLG+  P R
Sbjct: 301 EVIEPYLLQQGLIQRTPRGRMLAQKAWTHLGMPPPQR 337


>gi|83590536|ref|YP_430545.1| Holliday junction DNA helicase RuvB [Moorella thermoacetica ATCC
           39073]
 gi|97190146|sp|Q2RHT7|RUVB_MOOTA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|83573450|gb|ABC20002.1| Holliday junction DNA helicase subunit RuvB [Moorella thermoacetica
           ATCC 39073]
          Length = 336

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 187/334 (55%), Positives = 243/334 (72%), Gaps = 1/334 (0%)

Query: 2   MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M  E L++ N+  ED ++ L LRPR L E+ GQ      L +FI+AA+ R EALDHVL  
Sbjct: 1   MATERLVAGNLHNEDQELELSLRPRCLAEYIGQEHVKETLGIFIQAARERGEALDHVLLY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A ELGV  R TSGP + +AGDLAA+LTNL+ RDVLFIDEIHRL   
Sbjct: 61  GPPGLGKTTLAGIIANELGVQLRVTSGPALERAGDLAAILTNLQPRDVLFIDEIHRLPRQ 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILYPAMEDF LD+++G+GP ARS++++L  FTL+ ATTR GLL++PL+DRFGI  RL
Sbjct: 121 VEEILYPAMEDFVLDIILGKGPGARSIRLDLPPFTLVGATTRAGLLSSPLRDRFGINSRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY++ +L+ I++R A +  +A+  E A EIA R+RGTPR+A RLL+RVRD+AE+     
Sbjct: 181 EFYQVAELEEIIRRAATILQVAIEPEGAREIARRARGTPRVANRLLKRVRDYAEIRAGGV 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           ITRE+A  AL  L +D  G D  D R L  + R F GGPVG+ET++A +SE  D IED+ 
Sbjct: 241 ITREVAREALELLQVDAAGLDSSDRRLLLTLIRKFNGGPVGLETLAAAISEEPDTIEDVY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           EP+++Q G++QRTPRGR+  P A+ HLGI    R
Sbjct: 301 EPFLLQMGYLQRTPRGRVATPGAYAHLGIKPEDR 334


>gi|313114598|ref|ZP_07800106.1| Holliday junction DNA helicase RuvB [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310623062|gb|EFQ06509.1| Holliday junction DNA helicase RuvB [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 351

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 171/327 (52%), Positives = 234/327 (71%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           ++   ++  D++ + LRP+ LE++ GQ +   NLK+++EAAK R E +DH+L  GPPGLG
Sbjct: 12  MMQPGMTAADSEENNLRPQHLEDYIGQEKVKQNLKIYLEAAKRRGEPMDHILLYGPPGLG 71

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTTLA ++A E+GV  R TSGP I K GDLAALLTNL++ DVLFIDEIHRLS  VEE+LY
Sbjct: 72  KTTLAGIIANEMGVQIRITSGPAIEKPGDLAALLTNLQEGDVLFIDEIHRLSRQVEEVLY 131

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           PA+ED+ LD+M+G+GPSA+S++INL RFTL+ ATTR G +T PL+DRFG+ ++L  Y  +
Sbjct: 132 PALEDYALDIMIGKGPSAQSIRINLPRFTLVGATTRAGQITGPLRDRFGVLLKLELYSPD 191

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +L  I+QR A +    +T E A E+A RSRGTPR+A R L+R+RDFA V     I R++A
Sbjct: 192 ELSKIIQRSAGILDQPITPEGAYELAKRSRGTPRVANRFLKRIRDFATVLGDGIIDRDVA 251

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
              L R+ +D +G D+LD   L  I   + GGPVG+ET++A L E    +EDL EPY++Q
Sbjct: 252 LMGLKRMDVDALGLDELDRSMLRAIIEMYNGGPVGLETLAAALGEESVTLEDLCEPYLMQ 311

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            GF+ RTPRGR    +A++HLG+  P 
Sbjct: 312 MGFLTRTPRGRCATRLAYEHLGLKAPE 338


>gi|307294739|ref|ZP_07574581.1| Holliday junction DNA helicase RuvB [Sphingobium chlorophenolicum
           L-1]
 gi|306879213|gb|EFN10431.1| Holliday junction DNA helicase RuvB [Sphingobium chlorophenolicum
           L-1]
          Length = 339

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 215/331 (64%), Positives = 262/331 (79%), Gaps = 1/331 (0%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M  + L+S     ED D + LRP++L EF GQ  A  NL++FIEAAK R EALDHVLF G
Sbjct: 1   MSEDRLISSTRRVEDVD-AALRPKSLAEFIGQQAARENLRIFIEAAKGRGEALDHVLFFG 59

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLAQ+VARE+GV FR+TSGPVIAK+GDLAALLTNL++ DVLF+DEIHRL+  V
Sbjct: 60  PPGLGKTTLAQIVAREMGVGFRATSGPVIAKSGDLAALLTNLDEGDVLFVDEIHRLNPAV 119

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMED  LDLM+GEGPSARSV+I+L  FTL+ ATTR GLLT PL+DRFGIP+RL 
Sbjct: 120 EEVLYPAMEDRALDLMIGEGPSARSVRIDLPPFTLVGATTRQGLLTTPLRDRFGIPVRLQ 179

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY +++L+ +V+R A+L  LA+T + A EIA RSRGTPRIAGRLLRRVRDFA VA A  +
Sbjct: 180 FYTVDELELVVRRAARLLDLAITSDGAVEIARRSRGTPRIAGRLLRRVRDFANVAGAPAV 239

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
             ++ADAAL RL +D +G D +D RYL MIA  + GGPVG+ET++AGLSE RD IE++IE
Sbjct: 240 DAKVADAALTRLEVDHLGLDLMDRRYLMMIADIYRGGPVGVETLAAGLSEARDTIEEVIE 299

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           PY+IQ G I RT RGR L    W+HLG++ P
Sbjct: 300 PYLIQLGLIARTARGRCLNGPGWKHLGLNPP 330


>gi|163796369|ref|ZP_02190330.1| Holliday junction resolvasome, helicase subunit [alpha
           proteobacterium BAL199]
 gi|159178511|gb|EDP63053.1| Holliday junction resolvasome, helicase subunit [alpha
           proteobacterium BAL199]
          Length = 357

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 208/326 (63%), Positives = 262/326 (80%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            L++ + + ED   + LRP+TL++F GQ     NL++F++AA+ R EALDHVL  GPPGL
Sbjct: 12  RLIAGDRAPEDLGETTLRPQTLDDFVGQKRVRQNLRIFVDAARGRGEALDHVLLFGPPGL 71

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLAQ+VARELGVNFR+TSGPVIAKAGDLAALLTNL  RDVLFIDEIHRL+  VEE+L
Sbjct: 72  GKTTLAQIVARELGVNFRATSGPVIAKAGDLAALLTNLGPRDVLFIDEIHRLNPAVEEVL 131

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           YPAMED+QLDL++GEGPSARS++I+L  FTL+AATTR GL+T PL++RFGIP+RL FY+ 
Sbjct: 132 YPAMEDYQLDLIIGEGPSARSIRIDLPPFTLVAATTRSGLITTPLRERFGIPLRLEFYDT 191

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           E+L +IV+RGA+L    +TD+ A EIA R+RGTPR+AGRLLRRVRDFA VA +  +  E+
Sbjct: 192 EELTSIVRRGARLLDFDLTDDGAGEIARRARGTPRVAGRLLRRVRDFASVAGSGRVDAEL 251

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           ADA+L RL ID+ G D +D RYL  IA N+GGGPVG ET+ A L E RD IE++IEPY++
Sbjct: 252 ADASLTRLDIDQRGLDAMDRRYLGCIAENYGGGPVGAETLGAALGEQRDVIEEVIEPYLM 311

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDI 331
           QQG +QRTPRGR+L    W++LG+  
Sbjct: 312 QQGLLQRTPRGRILSAAGWRYLGLTP 337


>gi|78065250|ref|YP_368019.1| Holliday junction DNA helicase B [Burkholderia sp. 383]
 gi|97189947|sp|Q39JJ1|RUVB_BURS3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|77965995|gb|ABB07375.1| Holliday junction DNA helicase RuvB [Burkholderia sp. 383]
          Length = 356

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 194/325 (59%), Positives = 242/325 (74%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           +   S E+     LRPR L+++ GQ +    L++FIEAAK R+E LDHVL  GPPGLGKT
Sbjct: 17  TPASSHEEVFERALRPRQLDDYVGQEKVRGQLEIFIEAAKRRSEPLDHVLLFGPPGLGKT 76

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           TLA ++ARE+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA
Sbjct: 77  TLAHIIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPA 136

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +ED+Q+D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY+ E L
Sbjct: 137 LEDYQIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYDAEQL 196

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             IV+R A L    +    A EIA RSRGTPRIA RLLRRVRDFAEV     IT  +ADA
Sbjct: 197 SRIVRRSASLLNAQIDPNGALEIAKRSRGTPRIANRLLRRVRDFAEVKADGQITAAVADA 256

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL  L +D +GFD +D + L  I   F GGPVGI+ ++A + E RD IED++EPY+IQQG
Sbjct: 257 ALAMLDVDPVGFDLMDRKLLEAILYKFDGGPVGIDNLAAAIGEERDTIEDVLEPYLIQQG 316

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIPH 333
           F+QRTPRGR+   + ++H G+ +P 
Sbjct: 317 FLQRTPRGRVATLLTYRHFGLSVPD 341


>gi|170760872|ref|YP_001788390.1| Holliday junction DNA helicase RuvB [Clostridium botulinum A3 str.
           Loch Maree]
 gi|238688789|sp|B1L0B2|RUVB_CLOBM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|169407861|gb|ACA56272.1| Holliday junction DNA helicase RuvB [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 342

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 176/327 (53%), Positives = 235/327 (71%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
              +++    ++D +   LRP TL+E+ GQ +  +NL +FI+AAK R E+LDHVLF GPP
Sbjct: 2   ENRMVTPFDVEDDKEQYSLRPTTLKEYIGQKKVKANLDIFIKAAKKRNESLDHVLFYGPP 61

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++A E+  N + TSGP I KAGDLAA+LT+L D DVLFIDEIHRL+  +EE
Sbjct: 62  GLGKTTLANIIANEMTGNLKVTSGPAIEKAGDLAAILTSLTDYDVLFIDEIHRLNRSIEE 121

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILYPAMED+ LD+++G+G +A+S++++L +FTLI ATTRVGLLT+PL+DRFG+   + FY
Sbjct: 122 ILYPAMEDYALDIVIGKGAAAKSIRLDLPKFTLIGATTRVGLLTSPLRDRFGMLCAMEFY 181

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
             E+L  IV R A +  + +  EAA EI  RSRGTPRIA RLL+RVRD+ +V H   I  
Sbjct: 182 TDEELMEIVVRSAAILNVNICREAAFEIGKRSRGTPRIANRLLKRVRDYCDVKHDGDIDL 241

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           + A AAL  L +DK G D++D + L  I  NF GGPVG+ET++  + E  D IED+ EPY
Sbjct: 242 QGAKAALDLLEVDKEGLDKIDNKILEAIIFNFKGGPVGLETLAYFIGEELDTIEDVYEPY 301

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGID 330
           +IQ+GFI RTPRGR+    A+ H G+ 
Sbjct: 302 LIQKGFIMRTPRGRVASEKAYNHFGVT 328


>gi|88811436|ref|ZP_01126691.1| Holliday junction DNA helicase RuvB [Nitrococcus mobilis Nb-231]
 gi|88791325|gb|EAR22437.1| Holliday junction DNA helicase RuvB [Nitrococcus mobilis Nb-231]
          Length = 347

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 190/335 (56%), Positives = 239/335 (71%), Gaps = 1/335 (0%)

Query: 1   MMDREGLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + ++    + ED A    +RPR L ++ GQ      L++F+ AA+ R E LDHVL 
Sbjct: 1   MIEPDRVVQEQAAGEDEAIDRAIRPRRLADYVGQPTVREQLEIFVHAARQRGEPLDHVLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA ELGV  R TSGPV+ K GDLAALLTNLE +DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLAHIVAHELGVGLRQTSGPVLDKPGDLAALLTNLEPQDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           ++EE+LYPAMEDF++D+++GEGP+ARS+K++L  FTL+ ATTR GLLT+PL+DRFGI  R
Sbjct: 121 VIEEVLYPAMEDFKIDILIGEGPAARSIKLDLPPFTLVGATTRAGLLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y +EDL  IVQR A L  LA+    A EIA RSRGTPRIA RLLRRVRDFAEV    
Sbjct: 181 LEYYCVEDLAAIVQRSATLLALAIDARGALEIAQRSRGTPRIANRLLRRVRDFAEVKADG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT E+A AA+  L +D  GFD  D R L  I   F GGPVG+++++A + + R  IED+
Sbjct: 241 RITMEVAKAAMDLLNVDGNGFDVQDRRLLLTIIEKFDGGPVGVDSLAAAIGDERGTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           +EPY+IQQGFI RT RGR+    A+ H G   P R
Sbjct: 301 LEPYLIQQGFIMRTARGRMATRSAYLHFGYPPPAR 335


>gi|156742996|ref|YP_001433125.1| Holliday junction DNA helicase RuvB [Roseiflexus castenholzii DSM
           13941]
 gi|189046043|sp|A7NNH1|RUVB_ROSCS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|156234324|gb|ABU59107.1| Holliday junction DNA helicase RuvB [Roseiflexus castenholzii DSM
           13941]
          Length = 347

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 182/334 (54%), Positives = 236/334 (70%), Gaps = 1/334 (0%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M  E +++    +ED  I   LRPR L EF GQ +    L++ I AAK R E LDH L  
Sbjct: 1   MSDERVVTPRAGEEDQQIEKSLRPRRLAEFIGQEKVVEQLRIAIAAAKGRGEPLDHTLLY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKT+LA V+A E+ VN + TSGP I +AGDLAALLTNL+  D+LFIDEIHRL+  
Sbjct: 61  GPPGLGKTSLAGVLANEMEVNIKLTSGPAIERAGDLAALLTNLQKDDILFIDEIHRLNRA 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EE+LYPAMEDF LD+MVG+GP ARS+++ L RFT++ ATTR+ LLT+PL+DRFG   RL
Sbjct: 121 IEEVLYPAMEDFALDIMVGKGPGARSLRLKLPRFTVVGATTRLALLTSPLRDRFGSVHRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY ++ L  IV R A++ G+  T E A EIA R+RGTPRI  RLLRRVRD+A+V     
Sbjct: 181 EFYSVDALYEIVMRSARILGVVCTPEGAREIAARARGTPRIVNRLLRRVRDYAQVIGDGI 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           IT ++A  AL +L +D +G D+ D R L  I   FGGGPVG+ T++A L+E  DAIED+ 
Sbjct: 241 ITLDVARDALAKLEVDHLGLDENDRRLLRAIIDLFGGGPVGLSTLAASLAEEVDAIEDVY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           EP+++Q GF+QRTPRGR+    A++HLG+    R
Sbjct: 301 EPFLLQLGFLQRTPRGRIATRRAYEHLGVPYVER 334


>gi|317121687|ref|YP_004101690.1| Holliday junction DNA helicase subunit RuvB [Thermaerobacter
           marianensis DSM 12885]
 gi|315591667|gb|ADU50963.1| Holliday junction DNA helicase subunit RuvB [Thermaerobacter
           marianensis DSM 12885]
          Length = 372

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 185/333 (55%), Positives = 250/333 (75%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ E ++S  +   D  +   LRP++L++F GQ      L ++I+AA+ R +ALDHVL 
Sbjct: 1   MIEEERVVSSRLQPGDVPLEQGLRPQSLDDFPGQEAVKERLSIYIQAARERGDALDHVLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKT+LAQV+ARELGV FR TSGP I +AGDLAALLTNL DRDVLFIDEIHRL  
Sbjct: 61  YGPPGLGKTSLAQVIARELGVGFRMTSGPAIERAGDLAALLTNLNDRDVLFIDEIHRLPR 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEE+LYPAMEDF LDL++G+GP+ARS++I+L RFTL+ ATTR G LT PL+DRFG+ +R
Sbjct: 121 PVEEVLYPAMEDFALDLIIGKGPAARSLRIDLPRFTLVGATTRAGRLTGPLRDRFGVLLR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y  E+L  IV R A++ G+ +  E A E+A R+RGTPR+A RLLRR+RD+A+V    
Sbjct: 181 LEYYRPEELARIVLRSARILGVPIDPEGAEEVARRARGTPRVANRLLRRLRDYAQVRADG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT E+A A L  + +D +G D+ D R L ++A ++GGGPVG+ET++A + E  + IED+
Sbjct: 241 VITAEVARAGLDLMEVDPLGLDRADRRLLRVMAEHYGGGPVGLETLAAAIGEEPETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
            EPY++Q GF+QRTPRGR+L   A++HLG+ +P
Sbjct: 301 YEPYLMQMGFLQRTPRGRVLARRAYEHLGLPVP 333


>gi|172059668|ref|YP_001807320.1| Holliday junction DNA helicase RuvB [Burkholderia ambifaria MC40-6]
 gi|238689178|sp|B1YTD9|RUVB_BURA4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|171992185|gb|ACB63104.1| Holliday junction DNA helicase RuvB [Burkholderia ambifaria MC40-6]
          Length = 354

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 194/331 (58%), Positives = 245/331 (74%), Gaps = 2/331 (0%)

Query: 5   EGLL--SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           E ++  + + S E+     LRPR L+++ GQ +    L++FIEAAK R+E LDHVL  GP
Sbjct: 10  ERIIAATPSSSHEEVFERALRPRQLDDYVGQEKVRGQLEIFIEAAKRRSEPLDHVLLFGP 69

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++ARE+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VE
Sbjct: 70  PGLGKTTLAHIIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVE 129

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILYPA+ED+Q+D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL F
Sbjct: 130 EILYPALEDYQIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEF 189

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y+ + L  IV+R A L    +    A EIA RSRGTPRIA RLLRRVRDFAEV     IT
Sbjct: 190 YDADQLARIVRRSASLLNAHIDPSGALEIAKRSRGTPRIANRLLRRVRDFAEVKADGQIT 249

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             +ADAAL  L +D +GFD +D + L  I   F GGPVGI+ ++A + E RD IED++EP
Sbjct: 250 AAVADAALAMLDVDPVGFDLMDRKLLEAILHKFDGGPVGIDNLAAAIGEERDTIEDVLEP 309

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           Y+IQQGF+QRTPRGR+   + ++H G+  P 
Sbjct: 310 YLIQQGFLQRTPRGRVATLLTYRHFGLSAPD 340


>gi|294338684|emb|CAZ87015.1| Holliday junction ATP-dependent DNA helicase ruvB [Thiomonas sp.
           3As]
          Length = 352

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 194/322 (60%), Positives = 241/322 (74%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
            QE      LRP+ L+++ GQV     L +FI AA+ R EALDHVL  GPPGLGKTTLA 
Sbjct: 23  PQEAVAERALRPQQLDDYVGQVRVREQLDIFIGAARKREEALDHVLLFGPPGLGKTTLAH 82

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           +VARE+GVN RSTSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+
Sbjct: 83  IVAREMGVNLRSTSGPVLERAGDLAALLTNLERNDVLFIDEIHRLSPVVEEILYPALEDY 142

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           Q+D+++GEGP ARSVKI+L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  E+L  IV
Sbjct: 143 QIDILIGEGPGARSVKIDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTAEELTRIV 202

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R AKL G  +  + A EIA R+RGTPRIA RLLRRVRD+A++  A  I+ E+ADAAL  
Sbjct: 203 LRSAKLLGAVIDPDGAAEIARRARGTPRIANRLLRRVRDYADMKAAGRISAEVADAALRM 262

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D +GFD +D + L  +   F GGPVG++ ++A + E RD IED+IEPY+IQQG++QR
Sbjct: 263 LDVDPLGFDVMDRKLLEAVVHRFDGGPVGLDNLAAAIGEERDTIEDVIEPYLIQQGYLQR 322

Query: 313 TPRGRLLMPIAWQHLGIDIPHR 334
           TPRGR+     + HLG+  P R
Sbjct: 323 TPRGRIATAATYAHLGLAAPQR 344


>gi|256847965|ref|ZP_05553409.1| Holliday junction DNA helicase RuvB [Lactobacillus coleohominis
           101-4-CHN]
 gi|256715025|gb|EEU30002.1| Holliday junction DNA helicase RuvB [Lactobacillus coleohominis
           101-4-CHN]
          Length = 337

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 169/331 (51%), Positives = 229/331 (69%), Gaps = 2/331 (0%)

Query: 3   DREGLLSRNVSQED--ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           D E ++S   + E+       LRP+TL+++ GQ +    LKV+I AAK+R+EALDHVL  
Sbjct: 4   DAENIMSNQATNENESVIEKSLRPQTLDDYIGQRKIKKELKVYITAAKSRSEALDHVLLY 63

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA VVA E+GV  ++TSGP I K GDL ALL  L+  D+LFIDEIHRL  +
Sbjct: 64  GPPGLGKTTLAMVVAHEMGVQIKTTSGPAIEKPGDLVALLNELQAGDILFIDEIHRLPKV 123

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LY AMEDF +D++VGEGP+A  V   L  FTLI ATTR G L+ PL+DRFGI   +
Sbjct: 124 VEEMLYSAMEDFYIDIVVGEGPTAHPVHFPLPPFTLIGATTRAGALSAPLRDRFGIVEHM 183

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y+  +L+ I+ R A +  +++    A E+A+RSRGTPRIA RLL+RVRDFA+VA    
Sbjct: 184 AYYDSAELQQIILRSAGIFKISIEQTGAHELALRSRGTPRIANRLLKRVRDFAQVAKKPA 243

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I  EI   AL  L +D  G D++D + L  +   + GGPVG++TI+A + E  D IE++ 
Sbjct: 244 IDHEIVVKALHLLQVDGKGLDEVDRKVLLTMINLYHGGPVGVKTIAANIGEEVDTIEEMY 303

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           EPY++Q GF+ RT RGR++ P A++HLG++ 
Sbjct: 304 EPYLLQIGFLSRTSRGRVVTPAAYEHLGLNY 334


>gi|205374299|ref|ZP_03227098.1| Holliday junction DNA helicase B [Bacillus coahuilensis m4-4]
          Length = 332

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 178/332 (53%), Positives = 233/332 (70%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD   + S     +      LRP+ L ++ GQ +   NL++FIEAAK R E LDHVL  G
Sbjct: 1   MDERVISSEAEIGDSQFEQSLRPQFLRQYIGQDKVKHNLQIFIEAAKLREECLDHVLLYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA V+A E+GVN R+TSGP I + GDLAA+LT LE  DVLFIDEIHRL   +
Sbjct: 61  PPGLGKTTLAAVIANEMGVNLRTTSGPAIERPGDLAAILTALEPGDVLFIDEIHRLPRSI 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTR G ++ PL+DRFG+  RL 
Sbjct: 121 EEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGAISAPLRDRFGVLCRLE 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y  E LK IV R A++   ++T   A E+A RSRGTPRIA RLLRRVRDFA+V     I
Sbjct: 181 YYTEEQLKDIVVRTAEILDTSITSTGAIEMARRSRGTPRIANRLLRRVRDFAQVKGDGEI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T E+A  AL  L +DK G D +D + +  I   F GGPVG++T++A + E  D IED+ E
Sbjct: 241 TSELASQALELLQVDKKGLDHIDHKLILSIMDRFKGGPVGLDTMAASIGEESDTIEDVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           PY++Q GF+QRTPRGR++  +A++H   ++P 
Sbjct: 301 PYLLQIGFLQRTPRGRMVTNLAYEHFDREVPK 332


>gi|138896158|ref|YP_001126611.1| Holliday junction DNA helicase RuvB [Geobacillus
           thermodenitrificans NG80-2]
 gi|166231496|sp|A4IRB2|RUVB_GEOTN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|134267671|gb|ABO67866.1| Holliday junction DNA helicase RuvB [Geobacillus
           thermodenitrificans NG80-2]
          Length = 333

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 178/333 (53%), Positives = 236/333 (70%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD   +    +  E A    LRP+ L E+ GQ +   NL+VFIEAAK R E LDHVL  G
Sbjct: 1   MDERLVSGSALGGEAAFEPTLRPQYLHEYIGQDKVKENLQVFIEAAKLREETLDHVLLYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+GV  R+TSGP + + GDLAALLT+LE  DVLFIDEIHRL   V
Sbjct: 61  PPGLGKTTLAAIIANEMGVKMRATSGPALERPGDLAALLTSLEPGDVLFIDEIHRLPRTV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMED+ LD+ VG+GP ARS++++L  FTL+ ATTR G L+ PL+DRFG+  RL 
Sbjct: 121 EEVLYPAMEDYCLDITVGKGPEARSLRLDLPPFTLVGATTRAGALSAPLRDRFGVISRLE 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y+++ L  I++R A +  + + +EAA E+A R+RGTPRIA RLLRRVRDFA+V     I
Sbjct: 181 YYQVDQLAQIIERAAAILHIIINNEAALELARRARGTPRIANRLLRRVRDFAQVRGDGEI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T  +A  AL RL +D++G D +D + L  I   F GGPVG+ET++A + E    IE++ E
Sbjct: 241 TLPLAVEALERLQVDRLGLDHIDHKLLLAIIEKFAGGPVGLETMAAVIGEEAQTIEEVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           PY++Q G +QRTPRGR+  P A+ HLG+++P R
Sbjct: 301 PYLLQIGLLQRTPRGRVATPAAYAHLGMEVPKR 333


>gi|325917785|ref|ZP_08179969.1| Holliday junction DNA helicase subunit RuvB [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325536001|gb|EGD07813.1| Holliday junction DNA helicase subunit RuvB [Xanthomonas
           vesicatoria ATCC 35937]
          Length = 359

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 195/333 (58%), Positives = 246/333 (73%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M ++  + S    ++DA  + +RP+ L ++ GQ      + ++I+AAKAR EA+DHVL  
Sbjct: 14  MTEQRIIASSATREDDAADASIRPKRLADYLGQQPVREQMDIYIQAAKARGEAMDHVLIF 73

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTL+ V+A ELGVN RSTSGPVI KAGDLAALLTNL+  DVLFIDEIHRLS +
Sbjct: 74  GPPGLGKTTLSHVIANELGVNLRSTSGPVIEKAGDLAALLTNLQPHDVLFIDEIHRLSPV 133

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDFQ+D+M+G+GP+ARS+KI+L  FTLI ATTR GLLT PL+DRFGI  RL
Sbjct: 134 VEEVLYPAMEDFQIDIMIGDGPAARSIKIDLPPFTLIGATTRAGLLTAPLRDRFGIVQRL 193

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY   +L  IV R A + G+  T E A EIA R+RGTPRIA RLLRRVRD+A+V  A  
Sbjct: 194 EFYSPAELTRIVIRSAAILGIDCTPEGAAEIARRARGTPRIANRLLRRVRDYAQVKAAGH 253

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I   +A AA+  L +D  GFD+LD R L  I  +F GGPVG+E+++A LSE R  +ED+I
Sbjct: 254 IDLPVAQAAMQMLKVDPEGFDELDRRMLRTIVEHFDGGPVGVESLAASLSEERGTLEDVI 313

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY+IQQGF+ RT RGR++ P A+ HLG+  P 
Sbjct: 314 EPYLIQQGFLIRTARGRMVTPKAYLHLGLKPPR 346


>gi|145297805|ref|YP_001140646.1| Holliday junction DNA helicase RuvB [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|166231460|sp|A4SJ26|RUVB_AERS4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|142850577|gb|ABO88898.1| holliday junction DNA helicase RuvB [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 336

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 191/334 (57%), Positives = 247/334 (73%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S    +ED  I   +RP+ L ++TGQ   C  +++FIEAA+ R EALDH+L 
Sbjct: 1   MIEADRLISATGVREDEIIDRAIRPKMLADYTGQDPVCEQMEIFIEAARQRGEALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN ++TSGPV+ KAGDLAALLTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNIKTTSGPVLEKAGDLAALLTNLEPNDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY ++DL  IV R A+  GL +T + A E+A RSRGTPRIA RLLRRVRDFA+V    
Sbjct: 181 LEFYNVKDLTDIVSRSARCLGLEMTGDGALELARRSRGTPRIANRLLRRVRDFAQVKSDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I   IA  A+  L +D  GFD +D + L  +   F GGPVG++ ++A + E +D IED+
Sbjct: 241 RIDGPIAARAMDMLDVDNEGFDFMDRKLLLAVIDKFMGGPVGLDNLAAAIGEEKDTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +EPY+IQQG++QRTPRGR+  P A+ H G+  P 
Sbjct: 301 LEPYLIQQGYLQRTPRGRMATPRAYAHFGLQRPD 334


>gi|322807371|emb|CBZ04945.1| holliday junction DNA helicase RuvB [Clostridium botulinum H04402
           065]
          Length = 342

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 176/327 (53%), Positives = 236/327 (72%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
              +++    ++D +   LRP TL+E+ GQ +  +NL +FI+AAK R+E+LDHVLF GPP
Sbjct: 2   ENRMVTPFDVEDDREQYSLRPTTLKEYIGQKKVKANLDIFIKAAKKRSESLDHVLFYGPP 61

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++A E+  N + TSGP I KAGDLAA+LT+L D DVLFIDEIHRL+  +EE
Sbjct: 62  GLGKTTLANIIANEMTGNLKVTSGPAIEKAGDLAAILTSLTDYDVLFIDEIHRLNRSIEE 121

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILYPAMED+ LD+++G+G +A+S++++L +FTLI ATTRVGLLT+PL+DRFG+   + FY
Sbjct: 122 ILYPAMEDYALDIVIGKGAAAKSIRLDLPKFTLIGATTRVGLLTSPLRDRFGMLCAMEFY 181

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
             E+L  IV R A +  + +  EAA EI  RSRGTPRIA RLL+RVRD+ +V H   I  
Sbjct: 182 TDEELMEIVVRSAAILNVNICREAAFEIGKRSRGTPRIANRLLKRVRDYCDVKHDGDIDL 241

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           + A AAL  L +DK G D++D + L  I  NF GGPVG+ET++  + E  D IED+ EPY
Sbjct: 242 QGAKAALDLLEVDKEGLDKIDNKILEAIIFNFKGGPVGLETLAYFIGEELDTIEDVYEPY 301

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGID 330
           +IQ+GFI RTPRGR+    A+ H G+ 
Sbjct: 302 LIQKGFIMRTPRGRVASEKAYNHFGVT 328


>gi|225410072|ref|ZP_03761261.1| hypothetical protein CLOSTASPAR_05293 [Clostridium asparagiforme
           DSM 15981]
 gi|225042420|gb|EEG52666.1| hypothetical protein CLOSTASPAR_05293 [Clostridium asparagiforme
           DSM 15981]
          Length = 331

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 169/330 (51%), Positives = 239/330 (72%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M+R  + +   ++++   + LRP+ L+++ GQ    S LK++I+AA++R EALDHVLF G
Sbjct: 1   MERRIITTEVTAEDERIETTLRPQHLKDYIGQERLKSTLKIYIDAARSRGEALDHVLFYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+GV+ + TSGP I K G++AA+L NL++ DVLF+DEIHRL+  V
Sbjct: 61  PPGLGKTTLAGIIANEMGVSMKVTSGPAIEKPGEMAAILNNLQEGDVLFVDEIHRLNRQV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMED+ +D+M+G+  SARS++++L  FTL+ ATTR GLLT PL+DRFG+  RL 
Sbjct: 121 EEVLYPAMEDYAIDIMLGKEASARSIRLDLPHFTLVGATTRAGLLTAPLRDRFGVVQRLE 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY  E+L  I+   AK+ G+ +    A E+A RSRGTPR+A RLL+RVRDFA+V +   I
Sbjct: 181 FYTPEELTVIILNSAKVLGVEIDKSGALELARRSRGTPRLANRLLKRVRDFAQVKYDGVI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           TRE+ D AL  + +DK+G DQ D   L M+   F GGPVG++T++A L E    +ED+ E
Sbjct: 241 TREVTDFALDIMDVDKLGLDQNDRNILLMMIEKFSGGPVGLDTLAAALGEDSGTLEDVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           PY++  G I RTPRGR+    A++HLG++I
Sbjct: 301 PYLLMNGLINRTPRGRMATEAAYRHLGLEI 330


>gi|325274575|ref|ZP_08140633.1| Holliday junction DNA helicase RuvB [Pseudomonas sp. TJI-51]
 gi|324100302|gb|EGB98090.1| Holliday junction DNA helicase RuvB [Pseudomonas sp. TJI-51]
          Length = 348

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 188/335 (56%), Positives = 248/335 (74%), Gaps = 1/335 (0%)

Query: 1   MMDREGLLSRN-VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L++ +   +E+     +RP  L E+ GQ      + +FI+AA+ R+E+LDH L 
Sbjct: 1   MIEADRLIAASGRDREEVQDRAIRPLILSEYIGQPVVREQMSLFIQAARGRSESLDHTLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A E+GV+ +STSGP++ + GDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIIAHEMGVSVKSTSGPILERPGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMEDFQLD+M+GEGP+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDFQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY  +DL TIV R A + GLA+ D  A EIA R+RGTPRIA RLLRRVRD+AEV    
Sbjct: 181 LEFYSDKDLATIVSRSANILGLAIEDLGAYEIARRARGTPRIANRLLRRVRDYAEVRGKG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT+ +AD AL  L +D+ GFD  D R L  +   F GGPVG++ ++A +SE R  IED+
Sbjct: 241 QITKAVADMALNLLDVDERGFDHSDRRLLLTMIEKFDGGPVGVDNLAAAISEERHTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           +EPY+IQQG+I RTPRGR++   A+ H G++IP R
Sbjct: 301 LEPYLIQQGYIMRTPRGRVVTRHAYLHFGLNIPGR 335


>gi|37526028|ref|NP_929372.1| Holliday junction DNA helicase B [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|44888379|sp|Q7N547|RUVB_PHOLL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|36785458|emb|CAE14405.1| Holliday junction DNA helicase [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 335

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 192/330 (58%), Positives = 250/330 (75%), Gaps = 1/330 (0%)

Query: 1   MMDREGLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S  V Q+D A    +RP+ L E+ GQ + C  +++FI+AA+ R +ALDH+L 
Sbjct: 1   MIEADRLVSAEVLQDDEAIDRAIRPKLLSEYVGQPQVCEQMEIFIQAARQRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY ++DL++IV R A+  G+ +TD+ A ++AMRSRGTPRI  RLLRRVRDFA+V    
Sbjct: 181 LEFYNVDDLQSIVSRSARFMGVEITDDGARQVAMRSRGTPRITNRLLRRVRDFAQVKGNG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I   IA  AL  L++D  GFD LD + L  I   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 AIDGNIATRALDMLSVDAAGFDYLDRKLLIAIIDKFMGGPVGVDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           +EP++IQQGFIQRT RGR+    A++H G+
Sbjct: 301 LEPFLIQQGFIQRTSRGRIATEHAYRHFGM 330


>gi|171319638|ref|ZP_02908732.1| Holliday junction DNA helicase RuvB [Burkholderia ambifaria MEX-5]
 gi|171095129|gb|EDT40135.1| Holliday junction DNA helicase RuvB [Burkholderia ambifaria MEX-5]
          Length = 355

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 194/331 (58%), Positives = 245/331 (74%), Gaps = 2/331 (0%)

Query: 5   EGLL--SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           E ++  + + S E+     LRPR L+++ GQ +    L++FIEAAK R+E LDHVL  GP
Sbjct: 10  ERIIAATPSSSHEEVFERALRPRQLDDYVGQEKVRGQLEIFIEAAKRRSEPLDHVLLFGP 69

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++ARE+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VE
Sbjct: 70  PGLGKTTLAHIIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVE 129

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILYPA+ED+Q+D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL F
Sbjct: 130 EILYPALEDYQIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEF 189

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y+ + L  IV+R A L    +    A EIA RSRGTPRIA RLLRRVRDFAEV     IT
Sbjct: 190 YDADQLARIVRRSASLLNAHIDPSGALEIAKRSRGTPRIANRLLRRVRDFAEVKADGQIT 249

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             +ADAAL  L +D +GFD +D + L  I   F GGPVGI+ ++A + E RD IED++EP
Sbjct: 250 AAVADAALAMLDVDPVGFDLMDRKLLEAILHKFDGGPVGIDNLAAAIGEERDTIEDVLEP 309

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           Y+IQQGF+QRTPRGR+   + ++H G+  P 
Sbjct: 310 YLIQQGFLQRTPRGRVATLLTYRHFGLSAPD 340


>gi|94264075|ref|ZP_01287874.1| Holliday junction DNA helicase RuvB [delta proteobacterium MLMS-1]
 gi|93455491|gb|EAT05681.1| Holliday junction DNA helicase RuvB [delta proteobacterium MLMS-1]
          Length = 352

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 185/330 (56%), Positives = 240/330 (72%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M   E L+S  +  +D+  + LRPR LE + GQ +   NL++ I AAK R EALDH LF 
Sbjct: 1   MNQEERLVSPVILDDDSPDADLRPRRLEYYIGQEQLKENLEIAIAAAKGRGEALDHTLFH 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           G PGLGKTTLA V+A E+G   R TSGPVI K GDLAA+LT+L++ DVLFIDEIHRL+ +
Sbjct: 61  GFPGLGKTTLAYVIANEMGAAIRVTSGPVIEKPGDLAAILTSLQEGDVLFIDEIHRLNHV 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILYPAMED++LDL++G+GP ARSVK++L RFTL+ ATTR GLLT PL+DRFG+ +RL
Sbjct: 121 VEEILYPAMEDYELDLVIGQGPGARSVKMSLPRFTLVGATTRTGLLTPPLRDRFGLALRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           +FY  E+L  IV R A L G+ + D  A EI  RSRGTPRIA RLLRR+RDFAEV     
Sbjct: 181 DFYSPEELVAIVHRSAGLLGVPLDDAGALEIGRRSRGTPRIANRLLRRLRDFAEVRGQGR 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           IT E+ADAAL    +D++GFD++D R L  +   F GGP+G+ET++  + E ++ +ED+ 
Sbjct: 241 ITAEVADAALNMQGVDQLGFDEMDRRILLALIDRFQGGPIGLETLATMVCEEKNTLEDVY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           EP++IQ GF+ RTPRGR+    A+ H G +
Sbjct: 301 EPFLIQAGFLIRTPRGRMATRAAYLHFGRE 330


>gi|188990570|ref|YP_001902580.1| Holliday junction DNA helicase RuvB [Xanthomonas campestris pv.
           campestris str. B100]
 gi|229484901|sp|B0RPY7|RUVB_XANCB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|167732330|emb|CAP50522.1| Holliday junction binding protein DNA helicase [Xanthomonas
           campestris pv. campestris]
          Length = 346

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 192/333 (57%), Positives = 247/333 (74%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M ++  + S    +++A  + +RP+ L ++ GQ      ++++I+AAKAR EA+DHVL  
Sbjct: 1   MTEQRTIASSATREDEAADASIRPKRLADYLGQQPVRDQMEIYIQAAKARGEAMDHVLIF 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTL+ V+A ELGV+ R TSGPVI KAGDLAALLTNL+  DVLFIDEIHRLS +
Sbjct: 61  GPPGLGKTTLSHVIANELGVSLRVTSGPVIEKAGDLAALLTNLQPHDVLFIDEIHRLSPV 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDFQ+D+M+G+GP+ARS+KI+L  FTLI ATTR GLLT PL+DRFGI  RL
Sbjct: 121 VEEVLYPAMEDFQIDIMIGDGPAARSIKIDLPPFTLIGATTRAGLLTAPLRDRFGIVQRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  ++L  IV R A + G+  T + A EIA R+RGTPRIA RLLRRVRDFA+V  A  
Sbjct: 181 EFYSPQELTRIVIRSAAILGIDCTPDGAAEIARRARGTPRIANRLLRRVRDFAQVKAAGH 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I   +A AA+  L +D  GFD+LD R L  I  +F GGPVG+E+++A LSE R  +ED+I
Sbjct: 241 IDLAVAQAAMQMLKVDPEGFDELDRRMLRTIVDHFDGGPVGVESLAASLSEERGTLEDVI 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY+IQQGF+ RT RGR++ P A+ HLG+  P 
Sbjct: 301 EPYLIQQGFLIRTARGRMVTPKAYLHLGLKPPR 333


>gi|323138238|ref|ZP_08073310.1| Holliday junction DNA helicase RuvB [Methylocystis sp. ATCC 49242]
 gi|322396490|gb|EFX99019.1| Holliday junction DNA helicase RuvB [Methylocystis sp. ATCC 49242]
          Length = 346

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 235/330 (71%), Positives = 275/330 (83%), Gaps = 1/330 (0%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
             L+S     +D D +  RP TL +FTGQ  A +NLKVFIEAAK R +ALDHVL VGPPG
Sbjct: 6   RRLVSPEQRDDDTD-TSFRPLTLADFTGQEAARANLKVFIEAAKTRGDALDHVLLVGPPG 64

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLAQ+VARELGVNFRSTSGPVIAKAGDLAA LTNLE RDVLFIDEIHRL+  VEEI
Sbjct: 65  LGKTTLAQIVARELGVNFRSTSGPVIAKAGDLAAQLTNLEPRDVLFIDEIHRLNPAVEEI 124

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPAMEDFQLDL++GEGP+ARSVKI+L++FTL+ ATTR GLLT PL+DRFGIP+RLNFY 
Sbjct: 125 LYPAMEDFQLDLIIGEGPAARSVKIDLAKFTLVGATTRAGLLTTPLRDRFGIPVRLNFYT 184

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            E+L+ IV+RGA++ G+ + +E A EIA RSRGTPRIAGRLLRRVRDFA V  A TITR+
Sbjct: 185 AEELELIVRRGARVLGVGMNEEGAREIARRSRGTPRIAGRLLRRVRDFAIVEGAATITRQ 244

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +AD +L  L +D +G D +D RYL M+A NFGGGPVGIETI+A LSEPRDAIED+IEPY+
Sbjct: 245 LADRSLSLLEVDSIGLDIMDRRYLNMVALNFGGGPVGIETIAAALSEPRDAIEDIIEPYL 304

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           +QQGF+QRTPRGRLL P A++HLG+  P R
Sbjct: 305 LQQGFLQRTPRGRLLTPHAFKHLGLAEPAR 334


>gi|308070379|ref|YP_003871984.1| Holliday junction DNA helicase ruvB [Paenibacillus polymyxa E681]
 gi|305859658|gb|ADM71446.1| Holliday junction DNA helicase ruvB [Paenibacillus polymyxa E681]
          Length = 335

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 194/332 (58%), Positives = 245/332 (73%), Gaps = 2/332 (0%)

Query: 2   MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD + ++S N+  ED    L LRPR L E+ GQ +   NLKV+IEAAK R EALDHVL  
Sbjct: 1   MD-DRIISANLMMEDQTAELSLRPRYLNEYIGQNQVKENLKVYIEAAKMRKEALDHVLLY 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A ELGVN R+TSGP I + GDLAALLTNL++ DVLFIDEIHRL   
Sbjct: 60  GPPGLGKTTLANIIANELGVNLRTTSGPAIERPGDLAALLTNLQEGDVLFIDEIHRLHRT 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE++YPAMEDF LD+M+G+GPSARSV+++L  FTLI ATTR GLL+ PL+DRFG+  RL
Sbjct: 120 VEEVMYPAMEDFALDIMIGKGPSARSVRLDLPPFTLIGATTRAGLLSAPLRDRFGVISRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  ++L  IV R A +  + +  +AA EIA+RSRGTPRIA RLL+RVRDFA+VA    
Sbjct: 180 EFYTTDELAYIVSRNADIMEIEIVGDAAEEIALRSRGTPRIANRLLKRVRDFAQVAGDGI 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I  E+A  AL RL ID +G D++D + L  +  +F GGPVG++TI+A + E    IED+ 
Sbjct: 240 IHSELAAEALKRLQIDPLGLDEIDHKMLKAMIHSFRGGPVGLDTIAATIGEESQTIEDVY 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EPY++Q G +QRTPRGR + P A+ HLGI +P
Sbjct: 300 EPYLLQIGLLQRTPRGRTVTPAAYAHLGILMP 331


>gi|170726917|ref|YP_001760943.1| Holliday junction DNA helicase RuvB [Shewanella woodyi ATCC 51908]
 gi|238688664|sp|B1KGX9|RUVB_SHEWM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|169812264|gb|ACA86848.1| Holliday junction DNA helicase RuvB [Shewanella woodyi ATCC 51908]
          Length = 338

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 193/338 (57%), Positives = 253/338 (74%), Gaps = 4/338 (1%)

Query: 1   MMDREGLLSRNVS----QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH 56
           M++ + L+         +++     +RP+ L+E+TGQ ++ + LK+FI+AA+ R EALDH
Sbjct: 1   MIEADRLIHAEPQGIEERDEQIDRAMRPKMLDEYTGQDDSRAQLKIFIQAAQNRDEALDH 60

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHR 116
           +L  GPPGLGKTTLA +VA E+GVN +STSGPV+ KAGDLAALLTNLE  DVLFIDEIHR
Sbjct: 61  MLIYGPPGLGKTTLAMIVANEMGVNIKSTSGPVLEKAGDLAALLTNLEPGDVLFIDEIHR 120

Query: 117 LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
           LS +VEEILYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+ RFGI
Sbjct: 121 LSSVVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGALTSPLRARFGI 180

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
           P+RL FY ++DL +IV R A +  L + +  A E+A RSRGTPRIA RLLRRVRDFAEV 
Sbjct: 181 PLRLEFYNVKDLSSIVTRSANVLELPIDEAGAIELARRSRGTPRIANRLLRRVRDFAEVK 240

Query: 237 HAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAI 296
           H   IT+++A+ AL  L ID  GFD +D + L  I   F GGPVG++ ++A + E R+ I
Sbjct: 241 HDGEITKQVAELALDMLDIDSEGFDYMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETI 300

Query: 297 EDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           ED++EP++IQQGFIQRTPRGR+    A++H  I  P +
Sbjct: 301 EDVLEPFLIQQGFIQRTPRGRIATDRAYRHFDIIQPEK 338


>gi|115350635|ref|YP_772474.1| Holliday junction DNA helicase RuvB [Burkholderia ambifaria AMMD]
 gi|122324005|sp|Q0BI83|RUVB_BURCM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|115280623|gb|ABI86140.1| Holliday junction DNA helicase RuvB [Burkholderia ambifaria AMMD]
          Length = 355

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 194/331 (58%), Positives = 244/331 (73%), Gaps = 2/331 (0%)

Query: 5   EGLL--SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           E ++  +   S E+     LRPR L+++ GQ +    L++FIEAAK R+E LDHVL  GP
Sbjct: 10  ERIIAATPTSSHEEVFERALRPRQLDDYVGQEKVRGQLEIFIEAAKRRSEPLDHVLLFGP 69

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++ARE+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VE
Sbjct: 70  PGLGKTTLAHIIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVE 129

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILYPA+ED+Q+D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL F
Sbjct: 130 EILYPALEDYQIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEF 189

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y+ + L  IV+R A L    +    A EIA RSRGTPRIA RLLRRVRDFAEV     IT
Sbjct: 190 YDADQLARIVRRSASLLNAHIDPSGALEIAKRSRGTPRIANRLLRRVRDFAEVKADGQIT 249

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             +ADAAL  L +D +GFD +D + L  I   F GGPVGI+ ++A + E RD IED++EP
Sbjct: 250 AAVADAALAMLDVDPVGFDLMDRKLLEAILHKFDGGPVGIDNLAAAIGEERDTIEDVLEP 309

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           Y+IQQGF+QRTPRGR+   + ++H G+  P 
Sbjct: 310 YLIQQGFLQRTPRGRVATLLTYRHFGLSAPD 340


>gi|149375112|ref|ZP_01892884.1| Holliday junction DNA helicase B [Marinobacter algicola DG893]
 gi|149360476|gb|EDM48928.1| Holliday junction DNA helicase B [Marinobacter algicola DG893]
          Length = 342

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 188/337 (55%), Positives = 246/337 (72%), Gaps = 3/337 (0%)

Query: 1   MMDREGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L++    Q E+     +RP  L ++ GQ      +++FI AA+ R EALDHVL 
Sbjct: 1   MIESDRLITAQAGQYEEVQDRAIRPGVLADYVGQPAVREQMEIFISAARGRQEALDHVLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A E+GV+ ++TSGPV+ KAGDLAA+LTNLE+ DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIIANEMGVSIKTTSGPVLEKAGDLAAMLTNLEEGDVLFIDEIHRLSA 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ ATTR GLLT+PL+DRFGI  R
Sbjct: 121 AVEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGLLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY  +DL  I+ R A+L+ + + +  A EIA RSRGTPRIA RLLRRVRDFAEV    
Sbjct: 181 LEFYNTKDLTDIILRSARLSSVTIDNGGAYEIARRSRGTPRIANRLLRRVRDFAEVKADG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I+  IAD AL  L +D  GFD +D R L  +   F GGPVG+E+++A +SE R  IED+
Sbjct: 241 RISESIADQALNMLKVDAQGFDHMDRRLLLAMIEKFDGGPVGVESLAAAISEERGTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI--PHR 334
           +EP++IQQGF+ RTPRGR++   A+QH G+    P R
Sbjct: 301 LEPFLIQQGFMVRTPRGRMVTSNAYQHFGVVPSGPER 337


>gi|163854164|ref|YP_001642207.1| Holliday junction DNA helicase B [Methylobacterium extorquens PA1]
 gi|218533109|ref|YP_002423925.1| Holliday junction DNA helicase RuvB [Methylobacterium
           chloromethanicum CM4]
 gi|254564131|ref|YP_003071226.1| Holliday junction ATP-dependent DNA helicase [Methylobacterium
           extorquens DM4]
 gi|163665769|gb|ABY33136.1| Holliday junction DNA helicase RuvB [Methylobacterium extorquens
           PA1]
 gi|218525412|gb|ACK85997.1| Holliday junction DNA helicase RuvB [Methylobacterium
           chloromethanicum CM4]
 gi|254271409|emb|CAX27422.1| Holliday junction ATP-dependent DNA helicase [Methylobacterium
           extorquens DM4]
          Length = 356

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 231/328 (70%), Positives = 276/328 (84%), Gaps = 1/328 (0%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           LLS     +DAD S +RP +L EF GQ  A +N+++FIEAAK   +ALDHVLFVGPPGLG
Sbjct: 13  LLSPERRPDDADQS-IRPLSLSEFIGQRAARANMQIFIEAAKKTGQALDHVLFVGPPGLG 71

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTTLAQ+VARELGVNFRSTSGPVIAKAGDLAA LTNLE+RDVLFIDEIHRL+  VEEILY
Sbjct: 72  KTTLAQIVARELGVNFRSTSGPVIAKAGDLAAQLTNLEERDVLFIDEIHRLNPAVEEILY 131

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           PAMED+QLDL++GEGP+ARSVKI L +FTL+ ATTR GLLT PL+DRFGIPIRL FYEI+
Sbjct: 132 PAMEDYQLDLIIGEGPAARSVKIELPKFTLVGATTRAGLLTTPLRDRFGIPIRLEFYEID 191

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +L+ IV+RGA++ GL +++E A EIA R+RGTPRIAGRLLRRVRDFA V  A T++R IA
Sbjct: 192 ELELIVRRGARVLGLGMSEEGANEIAKRARGTPRIAGRLLRRVRDFAIVEDATTVSRAIA 251

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           D AL  L +D +G D +D +YLT+IA +FGGGPVGIETI+A LSEPRDAIED+IEPY+IQ
Sbjct: 252 DRALQMLDVDPVGLDVMDRKYLTLIAASFGGGPVGIETIAAALSEPRDAIEDIIEPYLIQ 311

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           +GF+QRTPRGR+L P A++H+G   P R
Sbjct: 312 KGFVQRTPRGRVLTPHAFRHMGFAEPRR 339


>gi|296283073|ref|ZP_06861071.1| Holliday junction DNA helicase RuvB [Citromicrobium bathyomarinum
           JL354]
          Length = 342

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 218/332 (65%), Positives = 261/332 (78%), Gaps = 2/332 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M+D+  L +     +D D + LRP+TL EF GQ  A  NL VFI AAK R EA+DH LF 
Sbjct: 1   MIDQ-PLHTPERLPDDPD-AALRPKTLTEFIGQEAARENLGVFIAAAKRRGEAMDHTLFF 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ+VARELG  FRSTSGPVIAKAGDLAALLTNLE  DVLFIDEIHRL+ +
Sbjct: 59  GPPGLGKTTLAQIVARELGAGFRSTSGPVIAKAGDLAALLTNLEPHDVLFIDEIHRLNPV 118

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMED  LDLM+GEGPSARSV+I+L  FTLI ATTR GLLT PL+DRFGIP+RL
Sbjct: 119 VEEVLYPAMEDRALDLMIGEGPSARSVRIDLPPFTLIGATTRQGLLTTPLRDRFGIPVRL 178

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           NFY  E+L+ +V RGA   GL +  + A EIA RSRGTPR+AGRLLRRVRDFA V +A +
Sbjct: 179 NFYTHEELERVVTRGANKLGLKIEPDGAREIARRSRGTPRVAGRLLRRVRDFASVDNAPS 238

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           IT ++AD+AL +L +D +G D +D RYLTMIA  +GGGPVGIET++AGL+EPRD +ED++
Sbjct: 239 ITAQVADSALTKLEVDSLGLDAMDRRYLTMIAETYGGGPVGIETLAAGLAEPRDTLEDVV 298

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EP++IQ G + RT RGR L    WQHLG+ +P
Sbjct: 299 EPFLIQLGLVARTARGRCLNAGGWQHLGLAVP 330


>gi|310658620|ref|YP_003936341.1| ATP-dependent DNA helicase, component of ruvABC resolvasome
           [Clostridium sticklandii DSM 519]
 gi|308825398|emb|CBH21436.1| ATP-dependent DNA helicase, component of RuvABC resolvasome
           [Clostridium sticklandii]
          Length = 333

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 171/327 (52%), Positives = 245/327 (74%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           ++++ L+  ++  ED     LRPR + E+ GQ  A + L +FIEAAK R E LDHVL  G
Sbjct: 4   INQDRLIDSSLKIEDESEVSLRPRNISEYIGQTNAVNQLNIFIEAAKKRNETLDHVLLYG 63

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTL+ ++A E+GV+ + TSGP I +AGDLAA+LTNL+D+D+LFIDEIHR++  V
Sbjct: 64  PPGLGKTTLSHIIASEMGVDIKVTSGPAIERAGDLAAILTNLKDKDILFIDEIHRINRNV 123

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMED+ LD+++G+GPSARS+++++ +FTLI ATTR G+LT+PL+DRFG+ + L+
Sbjct: 124 EEVLYPAMEDYCLDIIIGKGPSARSIRLDIPKFTLIGATTRTGMLTSPLRDRFGVILNLD 183

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
            Y +E L  IV R AK+  + + ++AA EIA RSRGTPRIA RLL+RVRD+A+V     I
Sbjct: 184 LYSVEQLLEIVTRSAKILDVPINNDAAIEIARRSRGTPRIANRLLKRVRDYAQVMGDGKI 243

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T +IA  +LL   +D+ G D++D R L  I +NF GGPVG++T++A + E ++ IE++ E
Sbjct: 244 TLKIAKESLLVFEVDEEGLDKVDQRLLQSIIKNFAGGPVGLDTLAASIGEDKETIEEVCE 303

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLG 328
           P++IQ+GF+ RTPRGR+    A++H  
Sbjct: 304 PFLIQKGFLNRTPRGRVATDFAYKHFN 330


>gi|331083812|ref|ZP_08332921.1| Holliday junction ATP-dependent DNA helicase ruvB [Lachnospiraceae
           bacterium 6_1_63FAA]
 gi|330403237|gb|EGG82797.1| Holliday junction ATP-dependent DNA helicase ruvB [Lachnospiraceae
           bacterium 6_1_63FAA]
          Length = 329

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 176/327 (53%), Positives = 242/327 (74%), Gaps = 1/327 (0%)

Query: 4   REGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
            + +++ +V +ED      LRP+ L ++ GQ +A  NLKV+IEAAK R +ALDHVLF GP
Sbjct: 2   EKRIITTDVMEEDLRTEGNLRPQLLNDYIGQEKAKKNLKVYIEAAKQRGDALDHVLFYGP 61

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++A ELGV+ + TSGP I K G++AA+L NL++ DVLF+DEIHRL+  VE
Sbjct: 62  PGLGKTTLAGIIANELGVHMKVTSGPAIEKPGEMAAILNNLQENDVLFVDEIHRLNRQVE 121

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMED+ +D+M+G+G +ARS++++L +FTL+ ATTR GLLT PL+DRFG+   L F
Sbjct: 122 EVLYPAMEDYAIDIMIGKGATARSIRLDLPKFTLVGATTRAGLLTAPLRDRFGVVHHLEF 181

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  E+L+TI+ R AK+ G+ + +  A E+A RSRGTPR+A RLL+RVRDFA+V +   IT
Sbjct: 182 YTEEELQTIIIRSAKVLGVEIDEAGALEMAKRSRGTPRLANRLLKRVRDFAQVKYDGKIT 241

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           +E+AD A+  L +D+ G DQ D   LT I   F GGPVG++T+SA + E    IED+ EP
Sbjct: 242 KEVADFAMDLLEVDRYGLDQTDRLLLTTIIERFLGGPVGLDTLSAAIGEDAGTIEDVYEP 301

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           Y+I+ GF+ RTPRGR +  + + HLGI
Sbjct: 302 YLIKNGFLLRTPRGRTVTELTYHHLGI 328


>gi|323489998|ref|ZP_08095219.1| Holliday junction DNA helicase RuvB [Planococcus donghaensis
           MPA1U2]
 gi|323396294|gb|EGA89119.1| Holliday junction DNA helicase RuvB [Planococcus donghaensis
           MPA1U2]
          Length = 332

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 175/331 (52%), Positives = 239/331 (72%), Gaps = 1/331 (0%)

Query: 4   REGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
            + ++   +S+ +D     LRP+ L ++ GQ +   NL++FIEAAK R E+LDHVL  GP
Sbjct: 2   EDRIIDSEISEFDDRFEQSLRPQMLSQYIGQHKVKHNLQIFIEAAKMRQESLDHVLLYGP 61

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA V+A E+ VN + TSGP I + GDLAA++++LE  DVLFIDEIHRL+  +E
Sbjct: 62  PGLGKTTLAAVIANEMEVNVKMTSGPAIERPGDLAAIVSSLEPGDVLFIDEIHRLNRAIE 121

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMEDF LD++VG+GP+ARSV+++L  FTLI ATTR G L+ PL+DRFG+  RL++
Sbjct: 122 EVLYPAMEDFCLDIVVGKGPTARSVRLDLPPFTLIGATTRAGALSAPLRDRFGVLSRLDY 181

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y+ E L  IV R +KL    +   AA EIA RSRGTPRIA RLL+RVRD+A+V    TIT
Sbjct: 182 YDTEALTEIVIRSSKLFEADINPNAAVEIARRSRGTPRIANRLLKRVRDYAQVRGTGTIT 241

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            ++A+ AL  L +D +G D +D + LT +   F GGPVG++TI+A + E    IED+ EP
Sbjct: 242 MDMAEQALEMLQVDPLGLDHIDHKLLTGMIERFRGGPVGLDTIAASIGEESTTIEDVYEP 301

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           Y++Q GFIQRTPRGR +  +A++H  +++P 
Sbjct: 302 YLLQIGFIQRTPRGRTVTQLAYEHFKLEMPE 332


>gi|119477230|ref|ZP_01617466.1| Holliday junction DNA helicase RuvB [marine gamma proteobacterium
           HTCC2143]
 gi|119449593|gb|EAW30831.1| Holliday junction DNA helicase RuvB [marine gamma proteobacterium
           HTCC2143]
          Length = 354

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 187/332 (56%), Positives = 244/332 (73%), Gaps = 1/332 (0%)

Query: 1   MMDREGLLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L++     +E+     +RP+TL ++ GQ      + +FI AA+ R E LDH L 
Sbjct: 1   MIETDRLIAPAAEPREEVQDRAIRPKTLVDYVGQPVVREQMDIFISAARLRDEPLDHTLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A E+GV+ ++TSGPV+ KAGDLAAL+TNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANILATEMGVSLKTTSGPVLEKAGDLAALMTNLEPGDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            +EEILYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ ATTR GLLT+PL+DRFGI  R
Sbjct: 121 QIEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGLLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY  EDL  IV R A +  + + +E ACEIA RSRGTPRIA RLLRRVRD+A+V    
Sbjct: 181 LEFYNTEDLTHIVSRSAAILDVLMDEEGACEIARRSRGTPRIANRLLRRVRDYADVKGDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           +IT+ IAD AL  L ID+ GFD LD R L  +   F GGPVG+++++A +SE R  IED+
Sbjct: 241 SITKSIADKALDMLNIDQHGFDHLDRRLLLALIEKFDGGPVGVDSLAAAISEERGTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           +EPY+IQQG+I R+PRGR+    A+ H G+D 
Sbjct: 301 LEPYLIQQGYILRSPRGRMATRNAYLHFGLDY 332


>gi|325929362|ref|ZP_08190492.1| Holliday junction DNA helicase subunit RuvB [Xanthomonas perforans
           91-118]
 gi|325540274|gb|EGD11886.1| Holliday junction DNA helicase subunit RuvB [Xanthomonas perforans
           91-118]
          Length = 346

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 192/333 (57%), Positives = 248/333 (74%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M ++  + S +  ++DA  + +RP+ L ++ GQ      ++++I+AAKAR EA+DHVL  
Sbjct: 1   MTEQRIIASSSTREDDAADASIRPKRLADYLGQQPVREQMEIYIQAAKARGEAMDHVLIF 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTL+ V+A ELGV+ R TSGPVI KAGDLAALLTNL+  DVLFIDEIHRLS +
Sbjct: 61  GPPGLGKTTLSHVIANELGVSLRVTSGPVIEKAGDLAALLTNLQPHDVLFIDEIHRLSPV 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDFQ+D+M+G+GP+ARS+KI+L  FTLI ATTR GLLT PL+DRFGI  RL
Sbjct: 121 VEEVLYPAMEDFQIDIMIGDGPAARSIKIDLPPFTLIGATTRAGLLTAPLRDRFGIVQRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  ++L  IV R A + G+  T E A EIA R+RGTPRI  RLLRRVRD+A+V  A  
Sbjct: 181 EFYSPQELTRIVIRSAAILGIDCTPEGAAEIARRARGTPRIGNRLLRRVRDYAQVKAAGH 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I   +A AA+  L +D  GFD+LD R L  I  +F GGPVG+E+++A LSE R  +ED+I
Sbjct: 241 IDLPVAQAAMQMLKVDPEGFDELDRRMLRTIVEHFDGGPVGVESLAASLSEERGTLEDVI 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY+IQQGF+ RT RGR++ P A+ HLG+ +P 
Sbjct: 301 EPYLIQQGFLIRTARGRMVTPKAYLHLGLKVPR 333


>gi|77460628|ref|YP_350135.1| Holliday junction DNA helicase RuvB [Pseudomonas fluorescens Pf0-1]
 gi|97190226|sp|Q3K7W0|RUVB_PSEPF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|77384631|gb|ABA76144.1| holliday junction DNA helicase [Pseudomonas fluorescens Pf0-1]
          Length = 353

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 192/337 (56%), Positives = 250/337 (74%), Gaps = 3/337 (0%)

Query: 1   MMDREGLLSRNVS---QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M++ + L++   S   +E+     +RP +L E+ GQ      +++FI+AA+ R+E+LDH 
Sbjct: 1   MIEADRLIAATHSPREREEVQDRAIRPVSLAEYIGQPTVREQMELFIQAARGRSESLDHT 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTLA ++A+E+GV+ +STSGPV+ + GDLAALLTNLE  DVLFIDEIHRL
Sbjct: 61  LIFGPPGLGKTTLANIIAQEMGVSIKSTSGPVLERPGDLAALLTNLEPHDVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           S IVEE+LYPAMEDFQLD+M+GEGP+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI 
Sbjct: 121 SPIVEEVLYPAMEDFQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIV 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            RL FY   DL TIV R A + GL +  E + EIA R+RGTPRIA RLLRRVRDFAEV  
Sbjct: 181 QRLEFYSTADLATIVSRSANILGLPLDPEGSFEIARRARGTPRIANRLLRRVRDFAEVRA 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
              IT+ +AD AL  L +D+ GFD  D R L  +   F GGPVGI++++A +SE R  IE
Sbjct: 241 KGHITKSVADLALNLLDVDEHGFDHQDRRLLLTMIEKFDGGPVGIDSLAAAISEERHTIE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           D++EPY+IQQG+I RTPRGR++   A+ H G++IP R
Sbjct: 301 DVLEPYLIQQGYIMRTPRGRVVTRHAYLHFGLNIPTR 337


>gi|225181938|ref|ZP_03735372.1| Holliday junction DNA helicase RuvB [Dethiobacter alkaliphilus AHT
           1]
 gi|225167378|gb|EEG76195.1| Holliday junction DNA helicase RuvB [Dethiobacter alkaliphilus AHT
           1]
          Length = 341

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 179/330 (54%), Positives = 243/330 (73%), Gaps = 1/330 (0%)

Query: 2   MDREGLLS-RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD E ++S R+ + +D   S LRPRTL E+ GQ +  +NL+VFI+AA+ R ++LDHVL  
Sbjct: 1   MDEERIISSRSRTDDDWQDSSLRPRTLGEYIGQEKLKTNLRVFIDAARQRGDSLDHVLLY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A ELGVN RSTSGP I + GDLAA+LTNL   DVLFIDEIHRL   
Sbjct: 61  GPPGLGKTTLASIIAGELGVNLRSTSGPAIERPGDLAAILTNLAPYDVLFIDEIHRLHRT 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDF LD+++G+GPSARS++++L  FT+I ATTR G L++PL+DRFG+  RL
Sbjct: 121 VEEVLYPAMEDFALDIIIGKGPSARSLRLDLPPFTMIGATTRAGALSSPLRDRFGVVSRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY   +L+ IV+R A +  + + +E A  IA  SRGTPR+A RLL+RVRDFA++    T
Sbjct: 181 EFYRDGELQEIVRRAAGILQVEIDEEGALAIAKSSRGTPRVANRLLKRVRDFAQIKADNT 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           IT ++A  A+  L +D +G D++D   L  +   F GGPVG++T++A +SE  + IED+ 
Sbjct: 241 ITGDVARLAMDMLEVDALGLDEVDRHLLRTMVEKFSGGPVGLDTLAAAISEETETIEDVY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           EPY++Q GF+QRTPRGR +  +A +HLG+ 
Sbjct: 301 EPYLMQIGFLQRTPRGRCVTRLACEHLGLP 330


>gi|325528761|gb|EGD05823.1| Holliday junction DNA helicase RuvB [Burkholderia sp. TJI49]
          Length = 355

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 193/331 (58%), Positives = 244/331 (73%), Gaps = 2/331 (0%)

Query: 5   EGLL--SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           E ++  +   S E+     LRPR L+++ GQ +    L++FIEAAK R+E LDHVL  GP
Sbjct: 10  ERIIAATPASSHEEVFERALRPRQLDDYVGQEKVRGQLEIFIEAAKRRSEPLDHVLLFGP 69

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++ARE+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VE
Sbjct: 70  PGLGKTTLAHIIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVE 129

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILYPA+ED+Q+D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL F
Sbjct: 130 EILYPALEDYQIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEF 189

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y+ + L  IV+R A L    +    A EIA RSRGTPRIA RLLRRVRD+AEV     IT
Sbjct: 190 YDADQLSRIVRRSASLLNAQIDPNGALEIARRSRGTPRIANRLLRRVRDYAEVKADGQIT 249

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             +ADAAL  L +D +GFD +D + L  I   F GGPVGI+ ++A + E RD IED++EP
Sbjct: 250 AAVADAALAMLDVDPVGFDLMDRKLLEAILHKFDGGPVGIDNLAAAIGEERDTIEDVLEP 309

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           Y+IQQGF+QRTPRGR+   + ++H G+  P 
Sbjct: 310 YLIQQGFLQRTPRGRVATLLTYRHFGLAAPD 340


>gi|240141624|ref|YP_002966104.1| Holliday junction ATP-dependent DNA helicase [Methylobacterium
           extorquens AM1]
 gi|240011601|gb|ACS42827.1| Holliday junction ATP-dependent DNA helicase [Methylobacterium
           extorquens AM1]
          Length = 356

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 231/328 (70%), Positives = 276/328 (84%), Gaps = 1/328 (0%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           LLS     +DAD S +RP +L EF GQ  A +N+++FIE+AK   +ALDHVLFVGPPGLG
Sbjct: 13  LLSPERRPDDADQS-IRPLSLSEFIGQRAARANMQIFIESAKKTGQALDHVLFVGPPGLG 71

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTTLAQ+VARELGVNFRSTSGPVIAKAGDLAA LTNLE+RDVLFIDEIHRL+  VEEILY
Sbjct: 72  KTTLAQIVARELGVNFRSTSGPVIAKAGDLAAQLTNLEERDVLFIDEIHRLNPAVEEILY 131

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           PAMED+QLDL++GEGP+ARSVKI L +FTL+ ATTR GLLT PL+DRFGIPIRL FYEI+
Sbjct: 132 PAMEDYQLDLIIGEGPAARSVKIELPKFTLVGATTRAGLLTTPLRDRFGIPIRLEFYEID 191

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +L+ IV+RGA++ GL +++E A EIA R+RGTPRIAGRLLRRVRDFA V  A T+TR IA
Sbjct: 192 ELELIVRRGARVLGLGMSEEGANEIAKRARGTPRIAGRLLRRVRDFAIVEDATTVTRAIA 251

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           D AL  L +D +G D +D +YLT+IA +FGGGPVGIETI+A LSEPRDAIED+IEPY+IQ
Sbjct: 252 DRALQMLDVDPVGLDVMDRKYLTLIAASFGGGPVGIETIAAALSEPRDAIEDIIEPYLIQ 311

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           +GF+QRTPRGR+L P A++H+G   P R
Sbjct: 312 KGFVQRTPRGRVLTPHAFRHMGFAEPRR 339


>gi|148543763|ref|YP_001271133.1| Holliday junction DNA helicase RuvB [Lactobacillus reuteri DSM
           20016]
 gi|184153169|ref|YP_001841510.1| Holliday junction DNA helicase RuvB [Lactobacillus reuteri JCM
           1112]
 gi|227363257|ref|ZP_03847389.1| Holliday junction DNA helicase B [Lactobacillus reuteri MM2-3]
 gi|325682135|ref|ZP_08161653.1| crossover junction ATP-dependent DNA helicase RuvB [Lactobacillus
           reuteri MM4-1A]
 gi|172048235|sp|A5VIX2|RUVB_LACRD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|229890172|sp|B2G6E8|RUVB_LACRJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|148530797|gb|ABQ82796.1| Holliday junction DNA helicase subunit RuvB [Lactobacillus reuteri
           DSM 20016]
 gi|183224513|dbj|BAG25030.1| holliday junction DNA helicase RuvB [Lactobacillus reuteri JCM
           1112]
 gi|227071713|gb|EEI10004.1| Holliday junction DNA helicase B [Lactobacillus reuteri MM2-3]
 gi|324978779|gb|EGC15728.1| crossover junction ATP-dependent DNA helicase RuvB [Lactobacillus
           reuteri MM4-1A]
          Length = 338

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 174/334 (52%), Positives = 240/334 (71%), Gaps = 2/334 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M +  G+LS + S +E++ + + LRP+ L E+ GQ +    L+V+I+AA++R EALDHVL
Sbjct: 1   MENDHGILSDHPSGEEESQVEITLRPQKLREYIGQPKIKHELEVYIKAAQSREEALDHVL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA V+A E+GVN R+TSGP I K GDL ALL  L+  DVLF+DEIHRL 
Sbjct: 61  LYGPPGLGKTTLAMVIANEMGVNIRTTSGPAIEKPGDLVALLNELKPGDVLFVDEIHRLP 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            +VEE+LY AMED+ +D+++GEGP+A  V   L  FTLI ATTR G+L+ PL+DRFGI  
Sbjct: 121 KVVEEMLYSAMEDYYIDIVIGEGPTAHPVHFPLPPFTLIGATTRAGMLSAPLRDRFGIVE 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
            +N+Y  ++L  I+ R AK+   ++ DE A E+++RSRGTPRIA RLL+RVRDFA+VA  
Sbjct: 181 HMNYYTQDELTKIIFRSAKIFHTSIQDEGAHELSLRSRGTPRIANRLLKRVRDFAQVAGK 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
           ++I   I   AL  L +D  G D++D + L  +   + GGPVG++TI+A + E  + IE+
Sbjct: 241 QSIDSAIVKQALSLLQVDDRGLDEIDRKMLLTMINFYHGGPVGLKTIAANIGEETNTIEE 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           + EPY++Q GFI RTPRGRL+ P A++HLGI+ P
Sbjct: 301 MYEPYLLQIGFISRTPRGRLVTPTAYEHLGIEYP 334


>gi|163738343|ref|ZP_02145758.1| Holliday junction DNA helicase RuvB [Phaeobacter gallaeciensis
           BS107]
 gi|161388264|gb|EDQ12618.1| Holliday junction DNA helicase RuvB [Phaeobacter gallaeciensis
           BS107]
          Length = 349

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 218/336 (64%), Positives = 262/336 (77%), Gaps = 3/336 (0%)

Query: 1   MMDREGLLSRNVSQEDA---DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M+D +  L      ED+   +   LRP+ L EF GQ EA +NL+VFIE+A+ R EA+DH 
Sbjct: 7   MIDADPTLRPTPLPEDSAAENDRALRPQGLGEFIGQAEARANLRVFIESARRRGEAMDHT 66

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           LF GPPGLGKTTLAQ+VARELGVNFR TSGPV+AKAGDLAA+LTNLE RDVLFIDEIHRL
Sbjct: 67  LFHGPPGLGKTTLAQIVARELGVNFRMTSGPVLAKAGDLAAILTNLESRDVLFIDEIHRL 126

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           +  VEE+LYPAMEDF+LDL++GEGP+AR+V+I L  FTL+ ATTR+GLLT PL+DRFGIP
Sbjct: 127 NPAVEEVLYPAMEDFELDLVIGEGPAARTVRIELQPFTLVGATTRMGLLTTPLRDRFGIP 186

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            RL FY +++L  IV R A+  G    D+ A EIA R+RGTPRIAGRLLRRV DFA V  
Sbjct: 187 TRLQFYTVDELFEIVSRNARKLGAPADDDGAREIARRARGTPRIAGRLLRRVVDFAVVEG 246

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
             TITRE+AD AL RL +D++G D  D RYL M+A N+GGGPVGIET+SA LSE RDA+E
Sbjct: 247 DGTITRELADGALTRLGVDQLGLDGADRRYLRMVAENYGGGPVGIETMSAALSESRDALE 306

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           ++IEPY++QQG IQRTPRGR+L   AW HLG+  P 
Sbjct: 307 EVIEPYLLQQGLIQRTPRGRMLAHKAWTHLGLTPPR 342


>gi|194468326|ref|ZP_03074312.1| Holliday junction DNA helicase RuvB [Lactobacillus reuteri 100-23]
 gi|194453179|gb|EDX42077.1| Holliday junction DNA helicase RuvB [Lactobacillus reuteri 100-23]
          Length = 338

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 172/334 (51%), Positives = 241/334 (72%), Gaps = 2/334 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M +  G+LS + S +E++ + + LRP+ L+E+ GQ +    L+V+I+AA++R EALDHVL
Sbjct: 1   MENDHGILSDHPSGEEESQVEITLRPQKLKEYIGQPKIKHELEVYIKAAQSREEALDHVL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA V+A E+GVN ++TSGP I K GDL ALL  L+  DVLF+DEIHRL 
Sbjct: 61  LYGPPGLGKTTLAMVIANEMGVNIKTTSGPAIEKPGDLVALLNELKPGDVLFVDEIHRLP 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            +VEE+LY AMED+ +D+++GEGP+A  V   L  FTLI ATTR G+L+ PL+DRFGI  
Sbjct: 121 KVVEEMLYSAMEDYYIDIVIGEGPTAHPVHFPLPPFTLIGATTRAGMLSAPLRDRFGIVE 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
            +N+Y  ++L  I+ R AK+   ++ +E A E+++RSRGTPRIA RLL+RVRDFA+VA  
Sbjct: 181 HMNYYTQDELTKIIFRSAKIFHTSIQNEGAHELSLRSRGTPRIANRLLKRVRDFAQVAGK 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
           ++I   I   AL  L +D  G D++D + L  +   + GGPVG++TI+A + E  + IE+
Sbjct: 241 RSIDSAIVKQALSLLQVDDRGLDEIDRKMLLTMINFYHGGPVGLKTIAANIGEETNTIEE 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           + EPY++Q GFI RTPRGRL+ P A++HLGI+ P
Sbjct: 301 MYEPYLLQIGFISRTPRGRLVTPTAYEHLGIEYP 334


>gi|254428183|ref|ZP_05041890.1| Holliday junction DNA helicase RuvB [Alcanivorax sp. DG881]
 gi|196194352|gb|EDX89311.1| Holliday junction DNA helicase RuvB [Alcanivorax sp. DG881]
          Length = 342

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 185/335 (55%), Positives = 241/335 (71%), Gaps = 2/335 (0%)

Query: 2   MDREGLLSRNV--SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           MD E +++     S E+     +RP +L ++ GQ +    +++FI+AA+ R EALDH L 
Sbjct: 1   MDNERVITAAAVGSHEEQQDRAIRPASLADYHGQAKVSERMEIFIDAARGRREALDHTLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++ARE+G   +STSGPV+ KAGDLAA+LTNLE+ DVLF+DEIHRLS 
Sbjct: 61  FGPPGLGKTTLAHIIAREMGCELKSTSGPVLEKAGDLAAILTNLEEGDVLFVDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ ATTR GLLT PL+DRFGI  R
Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGLLTAPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY ++DL  IV R   +  + +    A E+A R+RGTPRIA RLLRRVRD+AEV    
Sbjct: 181 LEFYSVDDLSGIVSRACDILAIPIETAGAMEVARRARGTPRIANRLLRRVRDYAEVKGDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT +IA  AL  L +D  G D  D R L MI   F GGPVG+E+++A L+E    +E++
Sbjct: 241 RITEDIAQRALDMLEVDSCGLDGTDRRLLDMIMHKFDGGPVGLESLAAALNEDSGTLEEV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           +EPY+IQQGFIQRTPRGR +   AW+H G+  P +
Sbjct: 301 VEPYLIQQGFIQRTPRGRAVTNHAWRHFGLQRPRQ 335


>gi|153939305|ref|YP_001392348.1| Holliday junction DNA helicase RuvB [Clostridium botulinum F str.
           Langeland]
 gi|168179564|ref|ZP_02614228.1| holliday junction DNA helicase RuvB [Clostridium botulinum NCTC
           2916]
 gi|168181760|ref|ZP_02616424.1| Holliday junction DNA helicase RuvB [Clostridium botulinum Bf]
 gi|170754942|ref|YP_001782705.1| Holliday junction DNA helicase RuvB [Clostridium botulinum B1 str.
           Okra]
 gi|226950499|ref|YP_002805590.1| Holliday junction DNA helicase RuvB [Clostridium botulinum A2 str.
           Kyoto]
 gi|237796526|ref|YP_002864078.1| Holliday junction DNA helicase RuvB [Clostridium botulinum Ba4 str.
           657]
 gi|166231485|sp|A7GHT8|RUVB_CLOBL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|229564226|sp|B1IMF3|RUVB_CLOBK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|254767420|sp|C1FKG1|RUVB_CLOBJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|259495661|sp|C3KTD2|RUVB_CLOB6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|152935201|gb|ABS40699.1| Holliday junction DNA helicase RuvB [Clostridium botulinum F str.
           Langeland]
 gi|169120154|gb|ACA43990.1| Holliday junction DNA helicase RuvB [Clostridium botulinum B1 str.
           Okra]
 gi|182669708|gb|EDT81684.1| holliday junction DNA helicase RuvB [Clostridium botulinum NCTC
           2916]
 gi|182675108|gb|EDT87069.1| Holliday junction DNA helicase RuvB [Clostridium botulinum Bf]
 gi|226841138|gb|ACO83804.1| Holliday junction DNA helicase RuvB [Clostridium botulinum A2 str.
           Kyoto]
 gi|229264087|gb|ACQ55120.1| Holliday junction DNA helicase RuvB [Clostridium botulinum Ba4 str.
           657]
 gi|295320340|gb|ADG00718.1| Holliday junction DNA helicase RuvB [Clostridium botulinum F str.
           230613]
          Length = 342

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 176/327 (53%), Positives = 236/327 (72%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
              +++    ++D +   LRP TL+E+ GQ +  +NL +FI+AAK R+E+LDHVLF GPP
Sbjct: 2   ENRMVTPFDVEDDREQYSLRPTTLKEYIGQKKVKANLDIFIKAAKKRSESLDHVLFYGPP 61

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++A E+  N + TSGP I KAGDLAA+LT+L D DVLFIDEIHRL+  +EE
Sbjct: 62  GLGKTTLANIIANEMTGNLKVTSGPAIEKAGDLAAILTSLTDYDVLFIDEIHRLNRSIEE 121

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILYPAMED+ LD+++G+G +A+S++++L +FTLI ATTRVGLLT+PL+DRFG+   + FY
Sbjct: 122 ILYPAMEDYALDIVIGKGAAAKSIRLDLPKFTLIGATTRVGLLTSPLRDRFGMLCAMEFY 181

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
             E+L  IV R A +  + +  EAA EI  RSRGTPRIA RLL+RVRD+ +V H   I  
Sbjct: 182 TDEELMEIVVRSAAILNVNICREAAFEIGKRSRGTPRIANRLLKRVRDYCDVKHDGDIDL 241

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           + A AAL  L +DK G D++D + L  I  NF GGPVG+ET++  + E  D IED+ EPY
Sbjct: 242 QGAKAALDLLEVDKEGLDKIDNKILEAIIFNFKGGPVGLETLAYFIGEELDTIEDVYEPY 301

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGID 330
           +IQ+GFI RTPRGR+    A+ H G+ 
Sbjct: 302 LIQKGFIMRTPRGRVASEKAYNHFGVT 328


>gi|148381021|ref|YP_001255562.1| Holliday junction DNA helicase RuvB [Clostridium botulinum A str.
           ATCC 3502]
 gi|153934214|ref|YP_001385392.1| Holliday junction DNA helicase RuvB [Clostridium botulinum A str.
           ATCC 19397]
 gi|153937310|ref|YP_001388799.1| Holliday junction DNA helicase RuvB [Clostridium botulinum A str.
           Hall]
 gi|166231483|sp|A7FY19|RUVB_CLOB1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|166231484|sp|A5I6F1|RUVB_CLOBH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|148290505|emb|CAL84633.1| holliday junction DNA helicase [Clostridium botulinum A str. ATCC
           3502]
 gi|152930258|gb|ABS35758.1| Holliday junction DNA helicase RuvB [Clostridium botulinum A str.
           ATCC 19397]
 gi|152933224|gb|ABS38723.1| Holliday junction DNA helicase RuvB [Clostridium botulinum A str.
           Hall]
          Length = 342

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 176/327 (53%), Positives = 235/327 (71%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
              +++    ++D +   LRP TL+E+ GQ +  +NL +FI+AAK R E+LDHVLF GPP
Sbjct: 2   ENRMVTPFDVEDDREQYSLRPTTLKEYIGQKKVKANLDIFIKAAKKRNESLDHVLFYGPP 61

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++A E+  N + TSGP I KAGDLAA+LT+L D DVLFIDEIHRL+  +EE
Sbjct: 62  GLGKTTLANIIANEMTGNLKVTSGPAIEKAGDLAAILTSLTDYDVLFIDEIHRLNRSIEE 121

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILYPAMED+ LD+++G+G +A+S++++L +FTLI ATTRVGLLT+PL+DRFG+   + FY
Sbjct: 122 ILYPAMEDYALDIVIGKGAAAKSIRLDLPKFTLIGATTRVGLLTSPLRDRFGMLCAMEFY 181

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
             E+L  IV R A +  + +  EAA EI  RSRGTPRIA RLL+RVRD+ +V H   I  
Sbjct: 182 TDEELMEIVVRSAAILNVNICREAAFEIGKRSRGTPRIANRLLKRVRDYCDVKHDGDIDL 241

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           + A AAL  L +DK G D++D + L  I  NF GGPVG+ET++  + E  D IED+ EPY
Sbjct: 242 QGAKAALDLLEVDKEGLDKIDNKILEAIIFNFKGGPVGLETLAYFIGEELDTIEDVYEPY 301

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGID 330
           +IQ+GFI RTPRGR+    A+ H G+ 
Sbjct: 302 LIQKGFIMRTPRGRVASEKAYNHFGVT 328


>gi|261493368|ref|ZP_05989894.1| crossover junction endonuclease RuvB [Mannheimia haemolytica
           serotype A2 str. BOVINE]
 gi|261496634|ref|ZP_05993014.1| crossover junction endonuclease RuvB [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261307837|gb|EEY09160.1| crossover junction endonuclease RuvB [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261311012|gb|EEY12189.1| crossover junction endonuclease RuvB [Mannheimia haemolytica
           serotype A2 str. BOVINE]
          Length = 334

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 185/331 (55%), Positives = 245/331 (74%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + ++S +   +E+     +RP+ L ++ GQ      +++FI+AAK R EALDH+L 
Sbjct: 1   MIEADRIISASPKREEEVIDRAIRPKLLADYVGQPSVRDQMEIFIKAAKLREEALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPYDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            +EE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ ATTR G LT+PL+DRFGI  R
Sbjct: 121 AIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY ++DL  IV+R A    L ++ + A E+A RSRGTPRIA RLLRRVRD+A+V +  
Sbjct: 181 LEFYSVDDLTLIVKRSADCLNLNLSADGAYEVARRSRGTPRIANRLLRRVRDYADVRNNG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT +IA  AL  L +D  GFD +D++ L  I   F GGPVG++ ++A + E RD IED+
Sbjct: 241 IITSDIAKQALAMLDVDSEGFDFMDIKLLQAIVERFDGGPVGLDNLAAAIGEERDTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           +EPY+IQQGF+QRTPRGR+     + HLGI 
Sbjct: 301 LEPYLIQQGFLQRTPRGRIATSRTYAHLGIT 331


>gi|260431114|ref|ZP_05785085.1| holliday junction DNA helicase RuvB [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260414942|gb|EEX08201.1| holliday junction DNA helicase RuvB [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 339

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 216/333 (64%), Positives = 260/333 (78%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D +  L      ED D   LRP+ L+EF GQ EA +NL++FI++A+ R EA+DH LF 
Sbjct: 1   MADADPTLRPQPLPEDND-RALRPQGLDEFIGQAEARANLRIFIQSARQRNEAMDHTLFH 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++ARELGVNFR TSGPV+AKAGDLAA+LTNLE+RDVLFIDEIHRL+  
Sbjct: 60  GPPGLGKTTLAQIMARELGVNFRMTSGPVLAKAGDLAAILTNLEERDVLFIDEIHRLNPA 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDF+LDL++GEGP+AR+V+I L  FTL+ ATTR+GLLT PL+DRFGIP RL
Sbjct: 120 VEEVLYPAMEDFELDLVIGEGPAARTVRIELQPFTLVGATTRMGLLTTPLRDRFGIPTRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  ++L  IV R A+  G    D+ A EIA RSRGTPRIAGRLLRRV DFA V     
Sbjct: 180 QFYTEDELHEIVTRNARKLGAPAEDDGAREIARRSRGTPRIAGRLLRRVVDFAIVEGDGR 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           ITRE+AD AL RL +DK+G D  D RYL +IA N+GGGPVGIET+SA LSE RD++E++I
Sbjct: 240 ITRELADGALTRLGVDKLGLDGADRRYLKLIAENYGGGPVGIETLSAALSESRDSLEEVI 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY++QQG IQRTPRGR+L   AW HLG+  P 
Sbjct: 300 EPYLLQQGLIQRTPRGRMLAQKAWTHLGMAAPK 332


>gi|296331681|ref|ZP_06874150.1| Holliday junction DNA helicase RuvB [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305675360|ref|YP_003867032.1| Holliday junction DNA helicase, ATP-dependent component [Bacillus
           subtilis subsp. spizizenii str. W23]
 gi|296151276|gb|EFG92156.1| Holliday junction DNA helicase RuvB [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305413604|gb|ADM38723.1| Holliday junction DNA helicase, ATP-dependent component [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 334

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 182/332 (54%), Positives = 234/332 (70%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD   + S   + E      LRP+ L ++ GQ +   NL+VFI+AAK R E LDHVL  G
Sbjct: 1   MDERLVSSEADNHESVIEQSLRPQNLAQYIGQHKVKENLRVFIDAAKMRQETLDHVLLYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA +VA E+GV  R+TSGP I + GDLAA+LT LE  DVLFIDEIHRL   +
Sbjct: 61  PPGLGKTTLASIVANEMGVELRTTSGPAIERPGDLAAILTALEPGDVLFIDEIHRLHRSI 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTRVGLLT+PL+DRFG+  RL 
Sbjct: 121 EEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRVGLLTSPLRDRFGVMSRLE 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y  E+L  IV R A +  + +   +A EIA RSRGTPR+A RLLRRVRDFA+V     I
Sbjct: 181 YYTQEELADIVTRTADVFEVEIDKPSALEIARRSRGTPRVANRLLRRVRDFAQVLGDSRI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T EI+  AL RL +D++G D +D + L  +   F GGPVG++TISA + E    IED+ E
Sbjct: 241 TEEISQDALERLQVDRLGLDHIDHKLLMGMIEKFNGGPVGLDTISATIGEEPHTIEDVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           PY++Q GFIQRTPRGR++ P  + H  ++ P 
Sbjct: 301 PYLLQIGFIQRTPRGRIVTPAVYHHFQMEAPR 332


>gi|154246998|ref|YP_001417956.1| Holliday junction DNA helicase RuvB [Xanthobacter autotrophicus
           Py2]
 gi|154161083|gb|ABS68299.1| Holliday junction DNA helicase RuvB [Xanthobacter autotrophicus
           Py2]
          Length = 343

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 222/327 (67%), Positives = 275/327 (84%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            LLS     EDA  S LRP+ L+EF GQ +A +NL+VFI+AA+AR EALDHVLFVGPPGL
Sbjct: 4   RLLSGEKRGEDAADSTLRPQLLKEFVGQAQARANLEVFIKAARARGEALDHVLFVGPPGL 63

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLAQ+++RE+GV FRSTSGPVIAKAGDLAA+LTNLE+RDVLFIDEIHRL+  VEEIL
Sbjct: 64  GKTTLAQIMSREMGVGFRSTSGPVIAKAGDLAAILTNLEERDVLFIDEIHRLAPAVEEIL 123

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           YPAMED++LDL++GEGP+ARSVKI L +FTL+ ATTR GLLT PL+DRFGIP+RL FY +
Sbjct: 124 YPAMEDYELDLVIGEGPAARSVKIALPKFTLVGATTRSGLLTTPLRDRFGIPVRLQFYTV 183

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           E+L+ IV RGA++ G+A+  + A EIA R+RGTPRIAGRLLRRVRDFA VA A+ I R++
Sbjct: 184 EELEKIVVRGARVLGIAIAPDGATEIARRARGTPRIAGRLLRRVRDFALVAEAERIDRKV 243

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           AD ALL L +D  G D +D RYLT+IA  +GGGPVG++T++A LSEPRDAIE+++EP+++
Sbjct: 244 ADRALLALEVDAAGLDAMDRRYLTVIADYYGGGPVGVDTLAAALSEPRDAIEEIVEPFLV 303

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           QQGFIQRTPRGR+L   A++HLG+  P
Sbjct: 304 QQGFIQRTPRGRMLTATAFRHLGLPEP 330


>gi|262276111|ref|ZP_06053920.1| holliday junction DNA helicase RuvB [Grimontia hollisae CIP 101886]
 gi|262219919|gb|EEY71235.1| holliday junction DNA helicase RuvB [Grimontia hollisae CIP 101886]
          Length = 335

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 189/335 (56%), Positives = 241/335 (71%), Gaps = 2/335 (0%)

Query: 1   MMDREGLLS--RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M++ + L+       ++D     +RP+ L ++ GQ      +++FI AA+ R EALDH+L
Sbjct: 1   MIEADRLMGTVPPSREDDIIDRAIRPKMLADYQGQDHVRDQMEIFIHAARKRKEALDHLL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA +VA E+ VN R+TSGPV+ KAGDLAALLTNLE  DVLFIDEIHRLS
Sbjct: 61  IFGPPGLGKTTLANIVANEMDVNIRTTSGPVLEKAGDLAALLTNLEPNDVLFIDEIHRLS 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTL+ ATTR G LT+PL+DRFGI  
Sbjct: 121 PVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLVGATTRAGSLTSPLRDRFGITQ 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           RL +Y I DLK IVQR A    L + +E A EIA R+RGTPRIA RLLRRVRD+AEV   
Sbjct: 181 RLEYYNIADLKGIVQRSANYLNLEIDEEGAYEIARRARGTPRIANRLLRRVRDYAEVKAD 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             I  +IA  AL  L +D  GFD +D + LT I   F GGPVG++ ++A + E +D IED
Sbjct: 241 GKIDADIASKALDMLDVDNQGFDYMDRKLLTAIIEKFDGGPVGLDNLAAAIGEAKDTIED 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           ++EPY+IQQG++QRTPRGR+    A+ H G D P 
Sbjct: 301 VLEPYLIQQGYLQRTPRGRIASQRAYLHFGFDRPE 335


>gi|210622016|ref|ZP_03292959.1| hypothetical protein CLOHIR_00905 [Clostridium hiranonis DSM 13275]
 gi|210154461|gb|EEA85467.1| hypothetical protein CLOHIR_00905 [Clostridium hiranonis DSM 13275]
          Length = 351

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 182/331 (54%), Positives = 245/331 (74%), Gaps = 1/331 (0%)

Query: 2   MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
            D   +++  +  +D +I   LRP+TL+E+ GQ ++   L +FIEAA++R E LDHVL  
Sbjct: 18  FDENRIITSTMQMDDVEIENNLRPKTLDEYLGQEKSKEQLSIFIEAARSRNEQLDHVLLY 77

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A E+GVN R TSGP I KAGDLAA+LTNLE+ DVLFIDEIHR++  
Sbjct: 78  GPPGLGKTTLAGIIANEMGVNLRITSGPAIEKAGDLAAILTNLEENDVLFIDEIHRINRS 137

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDF LD+++G+GPSARS++++L +FTLI ATTR G+LTNPL+DRFG+  +L
Sbjct: 138 VEEVLYPAMEDFCLDIIIGKGPSARSIRLDLPKFTLIGATTRPGMLTNPLRDRFGVICKL 197

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           ++Y  ++L  IV+R + L G  + D++A EIA RSRGTPRIA RLL+RVRD+A+V     
Sbjct: 198 DYYTNDELAQIVKRSSGLLGAGIDDKSAAEIARRSRGTPRIANRLLKRVRDYAQVRANGD 257

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           IT ++A  AL  L +D +G D +D   L  I   FGGGPVG++T++A + E R+ IED+ 
Sbjct: 258 ITEDVAKDALELLGVDSLGLDYVDETLLKTIIEKFGGGPVGLDTLAASIGEDRNTIEDVY 317

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           EPY+IQ GFI R  RGR+ MP A++HL   I
Sbjct: 318 EPYLIQLGFINRGARGRMAMPKAYKHLNYPI 348


>gi|302386616|ref|YP_003822438.1| Holliday junction DNA helicase RuvB [Clostridium saccharolyticum
           WM1]
 gi|302197244|gb|ADL04815.1| Holliday junction DNA helicase RuvB [Clostridium saccharolyticum
           WM1]
          Length = 332

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 179/331 (54%), Positives = 247/331 (74%), Gaps = 2/331 (0%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M+R  +++  V++ED  I   LRP+ LEE+ GQ +  +NLKV+I+AAKAR E+LDHVLF 
Sbjct: 1   MER-RIITTEVTEEDKRIEPNLRPKYLEEYIGQEKIRTNLKVYIDAAKARGESLDHVLFY 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTL+ ++A E+GVN + TSGP I K G++AA+L NL++ DVLF+DEIHRL+  
Sbjct: 60  GPPGLGKTTLSAIIANEMGVNMKVTSGPAIEKPGEMAAILNNLQEGDVLFVDEIHRLNRQ 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDF +D+M+G+  SARS++++L +FTL+ ATTR GLLT PL+DRFG+  +L
Sbjct: 120 VEEVLYPAMEDFAIDIMLGKDSSARSIRLDLPKFTLVGATTRAGLLTAPLRDRFGVVQKL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  ++LK IV R A++  + + +E A EIA RSRGTPR+A RLL+RVRDFA++ +  T
Sbjct: 180 EFYTPQELKIIVCRSARVLQVEIEEEGAAEIAKRSRGTPRLANRLLKRVRDFAQIKYNGT 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           IT+E+AD AL  L +DK+G D  D   LT +   F GGPVG++T++A L E    +ED+ 
Sbjct: 240 ITKEVADFALDILDVDKLGLDCNDRAILTTMIEKFAGGPVGLDTLAASLGEDAGTLEDVY 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           EPY++  GFI RT RGR+    A++HLGI +
Sbjct: 300 EPYLLMNGFINRTSRGRVATERAYEHLGIPM 330


>gi|295091402|emb|CBK77509.1| Holliday junction DNA helicase, RuvB subunit [Clostridium cf.
           saccharolyticum K10]
          Length = 331

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 172/327 (52%), Positives = 233/327 (71%), Gaps = 1/327 (0%)

Query: 5   EGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
             +++ +V++ED  I   LRP+ L E+ GQ    S LK+FI+AAK+R E LDHVLF GPP
Sbjct: 3   RRIITTDVTEEDKKIETSLRPQLLSEYIGQERIKSTLKIFIDAAKSRKEPLDHVLFYGPP 62

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTL  ++A E+GVN + TSGP I K G++AA+L  L + DVLF+DEIHRL+  VEE
Sbjct: 63  GLGKTTLCGIIANEMGVNMKVTSGPAIEKPGEIAAILNGLSEGDVLFVDEIHRLNRQVEE 122

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LYPAMED+ +D+M+G+  SARS+++ L +FTL+ ATTR GLLT PL+DRFGI  +++FY
Sbjct: 123 VLYPAMEDYAIDIMLGKDSSARSIRLELPKFTLVGATTRAGLLTAPLRDRFGIIQKMDFY 182

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
              +LKTIV R A +  + + +E A EIA RSRGTPR+A RLL+RVRDFA+V +   IT+
Sbjct: 183 TPAELKTIVMRSADVMQVKIEEEGAFEIARRSRGTPRLANRLLKRVRDFAQVKYDGVITK 242

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
            +AD AL  L +DK+G D  D   L  + + F GGPVG+ET++A L E    +ED+ EPY
Sbjct: 243 AVADFALDILDVDKLGLDNNDRAILNAMIQKFSGGPVGLETLAACLGEDAGTLEDVYEPY 302

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGID 330
           ++  G I RTPRGR+    A+ HLG+ 
Sbjct: 303 LLMNGLINRTPRGRVATEAAYHHLGLS 329


>gi|71278079|ref|YP_268843.1| Holliday junction DNA helicase RuvB [Colwellia psychrerythraea 34H]
 gi|97190000|sp|Q483C4|RUVB_COLP3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|71143819|gb|AAZ24292.1| Holliday junction DNA helicase RuvB [Colwellia psychrerythraea 34H]
          Length = 337

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 189/334 (56%), Positives = 245/334 (73%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+    S ED  +   +RP+ L+++TGQ    + +++FI AAK R E LDH+L 
Sbjct: 1   MIEADRLIEPIASVEDERVDRAIRPKMLQDYTGQQHVKAQMEIFIPAAKNRGEPLDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAALLTNLE+ D+LFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAALLTNLEENDILFIDEIHRLSA 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGALTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY + DL TIV R A    L + +E A E+A RSRGTPRIA RLLRRVRD+A++    
Sbjct: 181 LEFYNVADLSTIVSRSAHFLNLTIDEEGAFEVARRSRGTPRIANRLLRRVRDYADIKSHG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            + ++ A AAL  L +D  GFD +D + L  I   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 VVNQQTAAAALDMLEVDSEGFDIMDRKLLHAIIDKFMGGPVGLDNVAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           IEP++IQQGF+QRTPRGR+    A+QH GI    
Sbjct: 301 IEPFLIQQGFLQRTPRGRIATDRAYQHFGITKDQ 334


>gi|94309368|ref|YP_582578.1| Holliday junction DNA helicase RuvB [Cupriavidus metallidurans
           CH34]
 gi|123260400|sp|Q1LRB7|RUVB_RALME RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|93353220|gb|ABF07309.1| ATP-dependent DNA helicase, component of RuvABC resolvasome
           [Cupriavidus metallidurans CH34]
          Length = 355

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 195/331 (58%), Positives = 245/331 (74%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           DR    +   +QE+A    LRP+ L+E+ GQ +    L +F+ AA+ R EALDHVL  GP
Sbjct: 15  DRVISATPASTQEEAFERALRPKLLDEYVGQEKVRGQLDIFMHAARKRREALDHVLLFGP 74

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++ARE+GVN R TSGPV+ + GDLAALLTNLE  DVLFIDEIHRLS +VE
Sbjct: 75  PGLGKTTLAHIIAREMGVNLRQTSGPVLERPGDLAALLTNLEAHDVLFIDEIHRLSPVVE 134

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILYPA+ED+Q+D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL F
Sbjct: 135 EILYPALEDYQIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEF 194

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  ++L  IV R A L   A+    A EIA R+RGTPRIA RLLRRVRDFAEV    TIT
Sbjct: 195 YTPDELARIVARSALLLNAAIDPAGALEIARRARGTPRIANRLLRRVRDFAEVKSDGTIT 254

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           RE+ADAAL  L +D +GFD +D + L  +   F GGPVG++ ++A + E RD IED++EP
Sbjct: 255 RELADAALEMLDVDSVGFDLMDRKLLEAVLHKFDGGPVGVDNLAAAIGEARDTIEDVLEP 314

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           YMIQQG++QRTPRGR+    A++H G+  P 
Sbjct: 315 YMIQQGYLQRTPRGRMATAAAYRHFGLASPR 345


>gi|163742240|ref|ZP_02149628.1| Holliday junction DNA helicase B [Phaeobacter gallaeciensis 2.10]
 gi|161384570|gb|EDQ08951.1| Holliday junction DNA helicase B [Phaeobacter gallaeciensis 2.10]
          Length = 343

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 219/336 (65%), Positives = 262/336 (77%), Gaps = 3/336 (0%)

Query: 1   MMDREGLLSRNVSQEDA---DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M+D +  L      ED+   +   LRP+ L EF GQ EA +NL+VFIE+A+ R EA+DH 
Sbjct: 1   MIDADPTLRPAPLPEDSAAENDRALRPQGLGEFIGQAEARANLRVFIESARRRGEAMDHT 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           LF GPPGLGKTTLAQ+VARELGVNFR TSGPV+AKAGDLAA+LTNLE RDVLFIDEIHRL
Sbjct: 61  LFHGPPGLGKTTLAQIVARELGVNFRMTSGPVLAKAGDLAAILTNLESRDVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           +  VEE+LYPAMEDF+LDL++GEGP+AR+V+I L  FTL+ ATTR+GLLT PL+DRFGIP
Sbjct: 121 NPAVEEVLYPAMEDFELDLVIGEGPAARTVRIELQPFTLVGATTRMGLLTTPLRDRFGIP 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            RL FY +++L  IV R A+  G    DE A EIA R+RGTPRIAGRLLRRV DFA V  
Sbjct: 181 TRLQFYTVDELFEIVSRNARKLGAPADDEGAREIARRARGTPRIAGRLLRRVVDFAVVEG 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
             TITRE+AD AL RL +D++G D  D RYL M+A N+GGGPVGIET+SA LSE RDA+E
Sbjct: 241 DGTITRELADGALTRLGVDQLGLDGADRRYLRMVAENYGGGPVGIETMSAALSESRDALE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           ++IEPY++QQG IQRTPRGR+L   AW HLG+  P 
Sbjct: 301 EVIEPYLLQQGLIQRTPRGRMLAHKAWTHLGLTPPR 336


>gi|182677134|ref|YP_001831280.1| Holliday junction DNA helicase RuvB [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|226725454|sp|B2IBR9|RUVB_BEII9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|182633017|gb|ACB93791.1| Holliday junction DNA helicase RuvB [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 350

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 239/330 (72%), Positives = 274/330 (83%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           E L++  V  ED   + LRP TL +FTGQ  A  NL VFI AAKAR EALDHVLFVGPPG
Sbjct: 6   ERLVTSEVRDEDMTEASLRPLTLADFTGQAAARQNLSVFIAAAKARREALDHVLFVGPPG 65

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLAQ+VARELGVNFRSTSGPVIAKAGDLAA LT LE+RDVLFIDEIHRL+  VEEI
Sbjct: 66  LGKTTLAQIVARELGVNFRSTSGPVIAKAGDLAAQLTALEERDVLFIDEIHRLNPAVEEI 125

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPAMEDFQLDL++GEGP ARSVKI+L+RFTL+ ATTR GLLT PL+DRFGIPIRL FY 
Sbjct: 126 LYPAMEDFQLDLIIGEGPGARSVKIDLARFTLVGATTRAGLLTTPLRDRFGIPIRLEFYT 185

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           IE+L+ IV RGA++ GLA+  E A EIA R+RGTPRIAGRLLRRVRDFA V   +++TR 
Sbjct: 186 IEELERIVLRGARVQGLALEKEGANEIAKRARGTPRIAGRLLRRVRDFAIVDGVESVTRT 245

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +AD AL  L +D +G DQ+D RYL +IA +FGGGPVGIETI+A LSEPRDAIED+IEPY+
Sbjct: 246 LADKALSLLDVDPIGLDQMDRRYLNVIALSFGGGPVGIETIAAALSEPRDAIEDIIEPYL 305

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           IQQGF+QRTPRGRLL P A++HLG+  P R
Sbjct: 306 IQQGFLQRTPRGRLLTPHAFRHLGLKEPVR 335


>gi|256823070|ref|YP_003147033.1| Holliday junction DNA helicase RuvB [Kangiella koreensis DSM 16069]
 gi|256796609|gb|ACV27265.1| Holliday junction DNA helicase RuvB [Kangiella koreensis DSM 16069]
          Length = 339

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 184/332 (55%), Positives = 246/332 (74%), Gaps = 1/332 (0%)

Query: 1   MMDREGLLSR-NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + +++    + E+     +RP TL E+ GQ +    +++F+ AAK R EALDHVL 
Sbjct: 1   MIEHDRIIAPSEFADEEQFDRAIRPTTLGEYVGQEKVREQMEIFLGAAKKRQEALDHVLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTL+ ++A E+GV  + TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLSNIIANEMGVGIKHTSGPVLEKAGDLAAMLTNLEPNDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            +EE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTL+ ATTR GLLT+PL+DRFGI  R
Sbjct: 121 HIEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLVGATTRAGLLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY ++DL  IV R A++  L + ++ A EIA RSRGTPRIA RLLRRVRD+AE+    
Sbjct: 181 LEFYNLKDLTHIVMRSARILDLPIEEKGALEIARRSRGTPRIANRLLRRVRDYAEIKSDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT++I+D AL  L +D  GFD +D + L  I   F GGPVG++T++A + E RD I+++
Sbjct: 241 VITQDISDRALDMLDVDHKGFDMMDRKLLLTIIEKFAGGPVGLDTLAAAIGEERDTIDEV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           +EP++IQQGFIQRTPRGR+   +A+QH  I  
Sbjct: 301 LEPFLIQQGFIQRTPRGRIATKLAYQHFEIIP 332


>gi|307610274|emb|CBW99838.1| hypothetical protein LPW_15991 [Legionella pneumophila 130b]
          Length = 318

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 178/316 (56%), Positives = 232/316 (73%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +RP +L E+ GQ    S +++FI AA+ R + LDHVL  GPPGLGKTTLA ++A E+
Sbjct: 2   DRAIRPLSLSEYVGQDSVSSQMQIFINAARKRNDPLDHVLIFGPPGLGKTTLANIIAHEM 61

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138
           GVN R TSGPVI +AGD+AA+LTNL+  DVLFIDEIHRLS ++EEILYPAMED++LD+M+
Sbjct: 62  GVNIRQTSGPVIERAGDIAAILTNLQQNDVLFIDEIHRLSPVIEEILYPAMEDYKLDIMI 121

Query: 139 GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKL 198
           GEGP+ARS+K+ L  FTLI ATTR GLLT+PL+DRFGI  RL +Y ++ L  IV R A L
Sbjct: 122 GEGPAARSIKLELPPFTLIGATTRAGLLTSPLRDRFGIVQRLEYYSVDSLTQIVARSAHL 181

Query: 199 TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKM 258
            G+    E A EIA+RSRGTPRIA RLLRRVRD++EV     IT ++A  AL  L +D+ 
Sbjct: 182 LGVPTKPEGAREIALRSRGTPRIANRLLRRVRDYSEVKGNGIITVDMAQQALEMLEVDQH 241

Query: 259 GFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRL 318
           GFD +D + L  +  +F GGPVGI++I+A + E +  IED++EP++IQQGF+ RTPRGR+
Sbjct: 242 GFDLMDRKLLLAVIEHFNGGPVGIDSIAAAIGEEKGTIEDVLEPFLIQQGFLMRTPRGRI 301

Query: 319 LMPIAWQHLGIDIPHR 334
               A+QH G     +
Sbjct: 302 ATSKAYQHFGFSAIEQ 317


>gi|268608396|ref|ZP_06142123.1| Holliday junction DNA helicase RuvA [Ruminococcus flavefaciens
           FD-1]
          Length = 352

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 183/330 (55%), Positives = 242/330 (73%), Gaps = 1/330 (0%)

Query: 6   GLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
            ++S   +QED+DI   LRP+TL E+ GQ +A  NL ++IEAAK R+E LDHVL  GPPG
Sbjct: 12  RVISPENTQEDSDIEVSLRPQTLHEYIGQDKAKENLAIYIEAAKRRSEPLDHVLLYGPPG 71

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTL+ ++A ELGVN R T+GP I K GDL +LLT+L D DVLFIDEIHRLS  VEEI
Sbjct: 72  LGKTTLSGIIAHELGVNLRVTTGPAIEKPGDLVSLLTSLSDNDVLFIDEIHRLSRAVEEI 131

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPA+ED  +D+++G+GP+ARS++++L  FTLI ATTR G L+ PL+DRFG+  RL  Y 
Sbjct: 132 LYPALEDRVIDIIIGKGPAARSIRMDLKPFTLIGATTRAGQLSAPLRDRFGVVQRLELYT 191

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            E L  I++R A + G+  T + A EIA R+RGTPRIA RLL+RVRDFA+V     IT+E
Sbjct: 192 KEQLTDIIRRSAMILGIPCTADGAAEIAGRARGTPRIANRLLKRVRDFADVMGNGQITQE 251

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           IA  AL RL ID +G D LD R L MI + +GGGPVG+ET+++ ++E    +ED+ EP++
Sbjct: 252 IASIALSRLEIDNLGLDGLDRRMLEMIIKGYGGGPVGLETLASAINEESVTLEDVCEPFL 311

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           +Q GF+ RTPRGR+   +A++HLG   P +
Sbjct: 312 MQLGFLGRTPRGRVATRLAYEHLGYSQPEQ 341


>gi|319407734|emb|CBI81381.1| Holliday junction DNA helicase RuvB [Bartonella sp. 1-1C]
          Length = 360

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 230/330 (69%), Positives = 273/330 (82%), Gaps = 1/330 (0%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           D + LL       D D   LRP+TL++F GQ  A +NLK+FIEAA+ R EALDHVLFVGP
Sbjct: 5   DSQRLLGSIPLPNDPD-RSLRPQTLDDFIGQEAARANLKIFIEAARTRHEALDHVLFVGP 63

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTL+Q++A+ELGVNFRSTSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRL+  +E
Sbjct: 64  PGLGKTTLSQIMAKELGVNFRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLNPAIE 123

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILYPAMED+QLDL++GEGP+ARSVKI+L++FTL+AATTR+GLLT PL+DRFGIPIRLNF
Sbjct: 124 EILYPAMEDYQLDLIIGEGPAARSVKIDLAKFTLVAATTRLGLLTTPLRDRFGIPIRLNF 183

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y IE+L+ IVQR A+L  + ++D+ A EIA RSRGTPRIAGRLLRRV DFA V  A+ I 
Sbjct: 184 YTIEELEYIVQRNARLFSVQISDDGAHEIARRSRGTPRIAGRLLRRVCDFALVKKAEKID 243

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            +IAD AL RL +D +G D LD RYL +IA+ F GGPVGIETI+A LSEPRDAIED+IEP
Sbjct: 244 HKIADEALSRLEVDHLGLDPLDRRYLILIAQTFLGGPVGIETIAAALSEPRDAIEDIIEP 303

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           Y++QQGFIQRT RGR+L   AW HL +  P
Sbjct: 304 YLLQQGFIQRTARGRILTEKAWTHLRLCPP 333


>gi|312797267|ref|YP_004030189.1| Holliday junction DNA helicase ruvB [Burkholderia rhizoxinica HKI
           454]
 gi|312169042|emb|CBW76045.1| Holliday junction DNA helicase ruvB [Burkholderia rhizoxinica HKI
           454]
          Length = 367

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 199/340 (58%), Positives = 247/340 (72%), Gaps = 7/340 (2%)

Query: 1   MMDREGLLS-------RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEA 53
           M++ + L S            E+     LRPR L+E+ GQ +    L++FIEAAK R+EA
Sbjct: 15  MIETDKLGSERVIAATPASPNEEVFERALRPRLLDEYVGQEKVRGQLEIFIEAAKRRSEA 74

Query: 54  LDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDE 113
           LDHVL  GPPGLGKTTLA +VARE+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDE
Sbjct: 75  LDHVLLFGPPGLGKTTLAHIVAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDE 134

Query: 114 IHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           IHRLS +VEEILYPA+ED+Q+D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DR
Sbjct: 135 IHRLSPVVEEILYPALEDYQIDIMIGEGPAARSVKLDLHPFTLVGATTRAGMLTNPLRDR 194

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
           FGI  RL FY   +L  IV+R A L G  +  E A EIA RSRGTPRIA RLLRRVRD+A
Sbjct: 195 FGIVARLEFYTAGELARIVERSAHLLGAQIESEGALEIARRSRGTPRIANRLLRRVRDYA 254

Query: 234 EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
           EV     IT   ADAAL  L +D +GFD +D + L  I   F GGPVG++ ++A + E R
Sbjct: 255 EVKSDGRITATTADAALAMLDVDPVGFDLMDRKLLEAILHKFDGGPVGLDNLAAAIGEER 314

Query: 294 DAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           D IED+IEPY+IQQG++QRTPRGR+   +A++H G+  P 
Sbjct: 315 DTIEDVIEPYLIQQGYLQRTPRGRVATLLAYRHFGLAAPD 354


>gi|148359112|ref|YP_001250319.1| Holliday junction DNA helicase RuvB [Legionella pneumophila str.
           Corby]
 gi|296107160|ref|YP_003618860.1| holliday junction DNA helicase RuvB [Legionella pneumophila 2300/99
           Alcoy]
 gi|148280885|gb|ABQ54973.1| Holliday junction DNA helicase RuvB [Legionella pneumophila str.
           Corby]
 gi|295649061|gb|ADG24908.1| holliday junction DNA helicase RuvB [Legionella pneumophila 2300/99
           Alcoy]
          Length = 318

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 178/316 (56%), Positives = 232/316 (73%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +RP +L E+ GQ    S +++FI AA+ R + LDHVL  GPPGLGKTTLA ++A E+
Sbjct: 2   DRAIRPLSLSEYVGQDSVSSQMQIFINAARKRNDPLDHVLIFGPPGLGKTTLANIIAHEM 61

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138
           GVN R TSGPVI +AGD+AA+LTNL+  DVLFIDEIHRLS ++EEILYPAMED++LD+M+
Sbjct: 62  GVNIRQTSGPVIERAGDIAAILTNLQQNDVLFIDEIHRLSPVIEEILYPAMEDYKLDIMI 121

Query: 139 GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKL 198
           GEGP+ARS+K+ L  FTLI ATTR GLLT+PL+DRFGI  RL +Y ++ L  IV R A L
Sbjct: 122 GEGPAARSIKLELPPFTLIGATTRAGLLTSPLRDRFGIVQRLEYYSVDSLTKIVARSAHL 181

Query: 199 TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKM 258
            G+    E A EIA+RSRGTPRIA RLLRRVRD++EV     IT ++A  AL  L +D+ 
Sbjct: 182 LGVPTKPEGAREIALRSRGTPRIANRLLRRVRDYSEVKGNGIITVDMAQQALEMLEVDQH 241

Query: 259 GFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRL 318
           GFD +D + L  +  +F GGPVGI++I+A + E +  IED++EP++IQQGF+ RTPRGR+
Sbjct: 242 GFDLMDRKLLLAVIEHFNGGPVGIDSIAAAIGEEKGTIEDVLEPFLIQQGFLMRTPRGRI 301

Query: 319 LMPIAWQHLGIDIPHR 334
               A+QH G     +
Sbjct: 302 ATSKAYQHFGFSAIEQ 317


>gi|70732088|ref|YP_261844.1| Holliday junction DNA helicase RuvB [Pseudomonas fluorescens Pf-5]
 gi|97190216|sp|Q4K7D9|RUVB_PSEF5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|68346387|gb|AAY93993.1| Holliday junction DNA helicase RuvB [Pseudomonas fluorescens Pf-5]
          Length = 352

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 190/336 (56%), Positives = 247/336 (73%), Gaps = 2/336 (0%)

Query: 1   MMDREGLLSRN--VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M++ + L++      +E+     +RP +L ++ GQ      +++FI+AA+ R E+LDH L
Sbjct: 1   MIEADRLIAATGPREREEIQDRAIRPVSLADYIGQPSVREQMELFIQAARGRNESLDHTL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA ++A E+GV+ +STSGPV+ + GDLAALLTNLE  DVLFIDEIHRLS
Sbjct: 61  IFGPPGLGKTTLANIIAEEMGVSIKSTSGPVLERPGDLAALLTNLEPHDVLFIDEIHRLS 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            IVEE+LYPAMEDFQLD+M+GEGP+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  
Sbjct: 121 PIVEEVLYPAMEDFQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQ 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           RL FY   DL TIV R A + GL +  E A E+A R+RGTPRIA RLLRRVRDFAEV   
Sbjct: 181 RLEFYSTADLATIVSRSAGILGLPLDPEGAFEVARRARGTPRIANRLLRRVRDFAEVRAK 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             IT+ IAD AL  L +D+ GFD  D R L  +   F GGPVG+++++A +SE R  IED
Sbjct: 241 GHITKPIADLALNLLDVDERGFDHQDRRLLLTMIEKFDGGPVGVDSLAAAISEERHTIED 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           ++EPY+IQQG+I RTPRGR++   A+ H G++IP R
Sbjct: 301 VLEPYLIQQGYIMRTPRGRVVTRHAYLHFGLNIPSR 336


>gi|113866526|ref|YP_725015.1| Holliday junction DNA helicase RuvB [Ralstonia eutropha H16]
 gi|123033277|sp|Q0KEC4|RUVB_RALEH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|113525302|emb|CAJ91647.1| holliday junction resolvasome, helicase subunit RuvB [Ralstonia
           eutropha H16]
          Length = 352

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 190/325 (58%), Positives = 243/325 (74%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           +   SQE+A    LRP+ L+E+ GQ +    L +F+ AA+ R EALDHVL  GPPGLGKT
Sbjct: 17  TPASSQEEAFERALRPKLLDEYVGQEKVRGQLDIFMHAARNRREALDHVLLFGPPGLGKT 76

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           TLA ++ARE+GVN R TSGPV+ + GDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA
Sbjct: 77  TLAHIIAREMGVNLRQTSGPVLERPGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPA 136

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +ED+Q+D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  ++L
Sbjct: 137 LEDYQIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTADEL 196

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             IV R A+L    +  + A EIA R+RGTPRIA RLLRRVRD+AEV     ITR +ADA
Sbjct: 197 ARIVTRSAQLLHARIDPQGALEIARRARGTPRIANRLLRRVRDYAEVKGDGNITRAMADA 256

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL  L +D +GFD +D + L  +   FGGGPVG++ ++A + E RD IED++EPY+IQQG
Sbjct: 257 ALAMLDVDSVGFDLMDRKLLEAVLHKFGGGPVGVDNLAAAIGEERDTIEDVLEPYLIQQG 316

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIPH 333
           ++QRTPRGR+    A++H G+  P 
Sbjct: 317 YLQRTPRGRVATAAAYRHFGLANPQ 341


>gi|322382935|ref|ZP_08056767.1| Holliday junction DNA helicase RuvB-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321153055|gb|EFX45513.1| Holliday junction DNA helicase RuvB-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 334

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 186/333 (55%), Positives = 246/333 (73%), Gaps = 2/333 (0%)

Query: 2   MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD + ++S N+  ED  + L LRPR L E+ GQ +A  N+KV+IEAAK R EALDHVL  
Sbjct: 1   MD-DRIISANLMMEDQQMELSLRPRYLAEYIGQTQAKENMKVYIEAAKMRQEALDHVLLY 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTL+ ++A ELGVN R+TSGP I + GDLAA+LTNL++ DVLFIDEIHRL   
Sbjct: 60  GPPGLGKTTLSTIIANELGVNIRTTSGPAIERPGDLAAILTNLQENDVLFIDEIHRLHRT 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDF LD+++G+GPSARSV+++L  FTLI ATTR+GLL+ PL+DRFG+  RL
Sbjct: 120 VEEVLYPAMEDFALDIIIGKGPSARSVRLDLPPFTLIGATTRIGLLSAPLRDRFGVVSRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y +++L  IV R A +  + +  EAA EI  R+RGTPRIA RLL+RVRDFA+V     
Sbjct: 180 EYYTVDELAFIVTRAADILNVQIVGEAAQEIGRRARGTPRIANRLLKRVRDFAQVRGDGI 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I+ +IA AAL  + +D +G D++D + L  I  +F GGPVG++TI+A + E    IE++ 
Sbjct: 240 ISLDIAKAALKLIQVDDLGLDEIDHKMLRAIILSFRGGPVGLDTIAATIGEESQTIEEVY 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY++Q GF+QRTPRGR+    A+ HLG+  P 
Sbjct: 300 EPYLLQIGFLQRTPRGRMATLQAYDHLGLPRPE 332


>gi|257465002|ref|ZP_05629373.1| Holliday junction DNA helicase RuvB [Actinobacillus minor 202]
 gi|257450662|gb|EEV24705.1| Holliday junction DNA helicase RuvB [Actinobacillus minor 202]
          Length = 332

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 187/328 (57%), Positives = 245/328 (74%), Gaps = 1/328 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + ++S     +E+     +RP+ L ++ GQ   C  +++FI+AAK R EALDH+L 
Sbjct: 1   MIEADRIISATPKREEEIIDRAIRPKLLADYVGQPSVCQQMEIFIQAAKLRNEALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPYDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            +EE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 AIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY ++DL +IVQR A    L +++  A EIA RSRGTPRIA RLLRRVRD+A+V +  
Sbjct: 181 LEFYGVDDLTSIVQRSANCLNLNLSESGAHEIARRSRGTPRIANRLLRRVRDYADVRNNG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I+ EIA  AL  L +D  GFD +D++ L  I   F GGPVG++ ++A + E RD IED+
Sbjct: 241 IISSEIAKQALSMLDVDAEGFDFMDIKLLEAIVDRFDGGPVGLDNLAAAIGEERDTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHL 327
           +EPY+IQQGF+QRTPRGR+     ++HL
Sbjct: 301 LEPYLIQQGFLQRTPRGRIATQRTYEHL 328


>gi|121610986|ref|YP_998793.1| Holliday junction DNA helicase RuvB [Verminephrobacter eiseniae
           EF01-2]
 gi|166231567|sp|A1WQ68|RUVB_VEREI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|121555626|gb|ABM59775.1| Holliday junction DNA helicase RuvB [Verminephrobacter eiseniae
           EF01-2]
          Length = 354

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 189/321 (58%), Positives = 239/321 (74%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           +    QE A    LRP+ L+E+ GQV+A   L++FI AA+ R EALDHVL  GPPGLGKT
Sbjct: 20  APASPQEQAIERALRPKLLQEYVGQVKAREQLEIFIGAARQRGEALDHVLLFGPPGLGKT 79

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           TL+ ++A ELGVN R TSGPV+ K  DLAALLTNLE+RDVLFIDEIHRLS +VEEILYPA
Sbjct: 80  TLSHIIAAELGVNLRQTSGPVLEKPKDLAALLTNLENRDVLFIDEIHRLSPVVEEILYPA 139

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +ED+Q+D+M+GEGP+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  ++L
Sbjct: 140 LEDYQIDIMIGEGPAARSIKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYSAQEL 199

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             IV+R A L G+ + D    EIA RSRGTPRIA RLLRRVRD+ +V     IT++IA+ 
Sbjct: 200 ARIVKRSAGLLGVPMDDAGGLEIARRSRGTPRIANRLLRRVRDYTQVKADGHITKDIAER 259

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL  L +D  G D +D + L  +   F GGPVG++ I+A + E    IED+IEPY+IQQG
Sbjct: 260 ALAMLDVDPEGLDVMDRKLLEAVIHRFDGGPVGLDNIAASIGEETGTIEDVIEPYLIQQG 319

Query: 309 FIQRTPRGRLLMPIAWQHLGI 329
           F+QRTPRGR+    A++HLGI
Sbjct: 320 FLQRTPRGRIATQAAFRHLGI 340


>gi|306821135|ref|ZP_07454751.1| crossover junction ATP-dependent DNA helicase RuvB [Eubacterium
           yurii subsp. margaretiae ATCC 43715]
 gi|304550828|gb|EFM38803.1| crossover junction ATP-dependent DNA helicase RuvB [Eubacterium
           yurii subsp. margaretiae ATCC 43715]
          Length = 334

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 178/332 (53%), Positives = 245/332 (73%), Gaps = 2/332 (0%)

Query: 1   MMD--REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M++   + +++    +ED   + LRP+TL E+ GQ +A   L +FI+A+K+R E+LDHVL
Sbjct: 1   MIETIDDRIINTAFKKEDEGETDLRPKTLSEYIGQKKAVDQLDIFIKASKSRNESLDHVL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTL+ ++A E+  N + TSGP I +AGDLAALLTNL++ DVLFIDEIHR++
Sbjct: 61  LYGPPGLGKTTLSHIIANEMNSNIKITSGPAIERAGDLAALLTNLQEGDVLFIDEIHRVN 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
             VEE+LYPAMED+ +D+++G+GPSARS+++++ +FTLI ATTR G+LT+PL+DRFGI +
Sbjct: 121 RSVEEVLYPAMEDYCIDIIIGKGPSARSIRLDIPKFTLIGATTRTGMLTSPLRDRFGIIL 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
            L  Y  +DL  I+ R A +  + +  +AA EIA RSRGTPRIA R+L+RVRD+A+V   
Sbjct: 181 NLELYGTDDLLKIILRSANILNIPIKKDAAIEIAKRSRGTPRIANRMLKRVRDYAQVLGD 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             IT EIAD ALL L ID +G D LD R L  + RNF GGPVGI+TISA + E ++ IED
Sbjct: 241 GVITNEIADKALLMLGIDSLGLDSLDTRILKTMIRNFDGGPVGIDTISAAVGEDKETIED 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           + EP++IQ GF+ RTPRGR++    + H GI+
Sbjct: 301 VCEPFLIQNGFLIRTPRGRIVSDAVYSHFGIE 332


>gi|146338243|ref|YP_001203291.1| Holliday junction DNA helicase RuvB [Bradyrhizobium sp. ORS278]
 gi|172046978|sp|A4YMC8|RUVB_BRASO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|146191049|emb|CAL75054.1| Holliday junction DNA helicase ruvB [Bradyrhizobium sp. ORS278]
          Length = 348

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 228/332 (68%), Positives = 271/332 (81%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M     ++S     +D   + LRP+ L EF GQ +A +NL +FIEAA+ R EALDHVLFV
Sbjct: 1   MKPPARMVSPERRSDDVGDTALRPQQLSEFVGQQQARANLSIFIEAARKRGEALDHVLFV 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ+VARELGV FR+TSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRLS  
Sbjct: 61  GPPGLGKTTLAQIVARELGVGFRATSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSPA 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDFQLDL++GEGP+ARSVKI+LS+FTL+ ATTR GLLTNPL+DRFGIPIRL
Sbjct: 121 VEEVLYPAMEDFQLDLIIGEGPAARSVKIDLSKFTLVGATTRAGLLTNPLRDRFGIPIRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           NFY +E+L+ IV RGA++ G+ +T + A EIA R+RGTPRIAGRLLRRVRDFA  A A  
Sbjct: 181 NFYTVEELEGIVTRGARVLGIGMTPDGANEIARRARGTPRIAGRLLRRVRDFASAADASA 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I R IAD AL  L +D  G D +D RYL+ IA N+GGGPVG+ET++A LSEPRDAIED+I
Sbjct: 241 IDRAIADHALSALEVDAAGLDAMDRRYLSTIALNYGGGPVGVETMAAALSEPRDAIEDII 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EPY+IQ G++QRTPRGRLL   A++HLG+  P
Sbjct: 301 EPYLIQCGYLQRTPRGRLLTSHAFKHLGMAEP 332


>gi|304413291|ref|ZP_07394764.1| helicase subunit of Holliday junction resolvasome [Candidatus
           Regiella insecticola LSR1]
 gi|304284134|gb|EFL92527.1| helicase subunit of Holliday junction resolvasome [Candidatus
           Regiella insecticola LSR1]
          Length = 334

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 194/331 (58%), Positives = 243/331 (73%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S  +  ++  I   +RP+ L E+ GQ+     +++FI+AAK R EALDH+L 
Sbjct: 1   MIEADRLISAQIINDEVIIDRAIRPKLLAEYIGQLPVREQMEIFIQAAKQRGEALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A E+GVN R+TSGPV+ KAGDLAALLTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIIANEMGVNLRTTSGPVLEKAGDLAALLTNLESHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           ++EEILYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VIEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY+I DL+ IV R A+  GL +T E A  +A  SRGTPRI  RLLRRVRDFAEV    
Sbjct: 181 LEFYQIADLEQIVARSARCLGLTLTLEGAHHLARCSRGTPRITNRLLRRVRDFAEVKAQG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I   IA  AL  L ID  GFD +D + L  I   F GGPVG++ I+A + E R+ IED+
Sbjct: 241 VIDGPIAIKALEMLNIDGEGFDYMDRKLLLAIIDKFNGGPVGLDNIAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           +EPY+IQQGFIQRTPRGR+    A+QH GI 
Sbjct: 301 LEPYLIQQGFIQRTPRGRIATQHAYQHCGIS 331


>gi|53720507|ref|YP_109493.1| Holliday junction DNA helicase RuvB [Burkholderia pseudomallei
           K96243]
 gi|53726200|ref|YP_103911.1| Holliday junction DNA helicase RuvB [Burkholderia mallei ATCC
           23344]
 gi|67642315|ref|ZP_00441073.1| Holliday junction DNA helicase RuvB [Burkholderia mallei GB8 horse
           4]
 gi|76808940|ref|YP_334778.1| Holliday junction DNA helicase RuvB [Burkholderia pseudomallei
           1710b]
 gi|121600897|ref|YP_991617.1| Holliday junction DNA helicase RuvB [Burkholderia mallei SAVP1]
 gi|124385061|ref|YP_001027113.1| Holliday junction DNA helicase RuvB [Burkholderia mallei NCTC
           10229]
 gi|126441519|ref|YP_001060377.1| Holliday junction DNA helicase RuvB [Burkholderia pseudomallei 668]
 gi|126448021|ref|YP_001082058.1| Holliday junction DNA helicase RuvB [Burkholderia mallei NCTC
           10247]
 gi|126454669|ref|YP_001067638.1| Holliday junction DNA helicase B [Burkholderia pseudomallei 1106a]
 gi|134280568|ref|ZP_01767279.1| Holliday junction DNA helicase RuvB [Burkholderia pseudomallei 305]
 gi|167000503|ref|ZP_02266315.1| Holliday junction DNA helicase RuvB [Burkholderia mallei PRL-20]
 gi|167740151|ref|ZP_02412925.1| Holliday junction DNA helicase B [Burkholderia pseudomallei 14]
 gi|167817364|ref|ZP_02449044.1| Holliday junction DNA helicase B [Burkholderia pseudomallei 91]
 gi|167825772|ref|ZP_02457243.1| Holliday junction DNA helicase B [Burkholderia pseudomallei 9]
 gi|167847254|ref|ZP_02472762.1| Holliday junction DNA helicase B [Burkholderia pseudomallei B7210]
 gi|167895841|ref|ZP_02483243.1| Holliday junction DNA helicase B [Burkholderia pseudomallei 7894]
 gi|167904232|ref|ZP_02491437.1| Holliday junction DNA helicase B [Burkholderia pseudomallei NCTC
           13177]
 gi|167920443|ref|ZP_02507534.1| Holliday junction DNA helicase B [Burkholderia pseudomallei BCC215]
 gi|217421021|ref|ZP_03452526.1| Holliday junction DNA helicase RuvB [Burkholderia pseudomallei 576]
 gi|226198383|ref|ZP_03793952.1| Holliday junction DNA helicase RuvB [Burkholderia pseudomallei
           Pakistan 9]
 gi|237813765|ref|YP_002898216.1| holliday junction DNA helicase RuvB [Burkholderia pseudomallei
           MSHR346]
 gi|242315146|ref|ZP_04814162.1| Holliday junction DNA helicase RuvB [Burkholderia pseudomallei
           1106b]
 gi|254178911|ref|ZP_04885565.1| Holliday junction DNA helicase RuvB [Burkholderia mallei ATCC
           10399]
 gi|254180687|ref|ZP_04887285.1| Holliday junction DNA helicase RuvB [Burkholderia pseudomallei
           1655]
 gi|254191516|ref|ZP_04898019.1| Holliday junction DNA helicase RuvB [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254194850|ref|ZP_04901280.1| Holliday junction DNA helicase RuvB [Burkholderia pseudomallei S13]
 gi|254202623|ref|ZP_04908986.1| Holliday junction DNA helicase RuvB [Burkholderia mallei FMH]
 gi|254207962|ref|ZP_04914312.1| Holliday junction DNA helicase RuvB [Burkholderia mallei JHU]
 gi|254260762|ref|ZP_04951816.1| Holliday junction DNA helicase RuvB [Burkholderia pseudomallei
           1710a]
 gi|254299227|ref|ZP_04966677.1| Holliday junction DNA helicase RuvB [Burkholderia pseudomallei
           406e]
 gi|254355898|ref|ZP_04972176.1| Holliday junction DNA helicase RuvB [Burkholderia mallei
           2002721280]
 gi|68715374|sp|Q62HA9|RUVB_BURMA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|68715383|sp|Q63QX5|RUVB_BURPS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|97189943|sp|Q3JNS5|RUVB_BURP1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|166231468|sp|A3MP72|RUVB_BURM7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|166231469|sp|A2S594|RUVB_BURM9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|166231470|sp|A1V064|RUVB_BURMS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|166231471|sp|A3NZ67|RUVB_BURP0 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|166231472|sp|A3NDF6|RUVB_BURP6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|52210921|emb|CAH36909.1| holliday junction DNA helicase [Burkholderia pseudomallei K96243]
 gi|52429623|gb|AAU50216.1| Holliday junction DNA helicase RuvB [Burkholderia mallei ATCC
           23344]
 gi|76578393|gb|ABA47868.1| Holliday junction DNA helicase RuvB [Burkholderia pseudomallei
           1710b]
 gi|121229707|gb|ABM52225.1| Holliday junction DNA helicase RuvB [Burkholderia mallei SAVP1]
 gi|124293081|gb|ABN02350.1| Holliday junction DNA helicase RuvB [Burkholderia mallei NCTC
           10229]
 gi|126221012|gb|ABN84518.1| Holliday junction DNA helicase RuvB [Burkholderia pseudomallei 668]
 gi|126228311|gb|ABN91851.1| Holliday junction DNA helicase RuvB [Burkholderia pseudomallei
           1106a]
 gi|126240891|gb|ABO03984.1| Holliday junction DNA helicase RuvB [Burkholderia mallei NCTC
           10247]
 gi|134248575|gb|EBA48658.1| Holliday junction DNA helicase RuvB [Burkholderia pseudomallei 305]
 gi|147746870|gb|EDK53947.1| Holliday junction DNA helicase RuvB [Burkholderia mallei FMH]
 gi|147751856|gb|EDK58923.1| Holliday junction DNA helicase RuvB [Burkholderia mallei JHU]
 gi|148024873|gb|EDK83051.1| Holliday junction DNA helicase RuvB [Burkholderia mallei
           2002721280]
 gi|157808819|gb|EDO85989.1| Holliday junction DNA helicase RuvB [Burkholderia pseudomallei
           406e]
 gi|157939187|gb|EDO94857.1| Holliday junction DNA helicase RuvB [Burkholderia pseudomallei
           Pasteur 52237]
 gi|160694825|gb|EDP84833.1| Holliday junction DNA helicase RuvB [Burkholderia mallei ATCC
           10399]
 gi|169651599|gb|EDS84292.1| Holliday junction DNA helicase RuvB [Burkholderia pseudomallei S13]
 gi|184211226|gb|EDU08269.1| Holliday junction DNA helicase RuvB [Burkholderia pseudomallei
           1655]
 gi|217396433|gb|EEC36450.1| Holliday junction DNA helicase RuvB [Burkholderia pseudomallei 576]
 gi|225929566|gb|EEH25584.1| Holliday junction DNA helicase RuvB [Burkholderia pseudomallei
           Pakistan 9]
 gi|237504665|gb|ACQ96983.1| holliday junction DNA helicase RuvB [Burkholderia pseudomallei
           MSHR346]
 gi|238523443|gb|EEP86881.1| Holliday junction DNA helicase RuvB [Burkholderia mallei GB8 horse
           4]
 gi|242138385|gb|EES24787.1| Holliday junction DNA helicase RuvB [Burkholderia pseudomallei
           1106b]
 gi|243063558|gb|EES45744.1| Holliday junction DNA helicase RuvB [Burkholderia mallei PRL-20]
 gi|254219451|gb|EET08835.1| Holliday junction DNA helicase RuvB [Burkholderia pseudomallei
           1710a]
          Length = 356

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 196/331 (59%), Positives = 246/331 (74%), Gaps = 2/331 (0%)

Query: 5   EGLL--SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           E ++  +   S E+A    LRPR L+E+ GQ +    L++FIEAAK R+EALDHVL  GP
Sbjct: 10  ERIIAATPASSHEEAFERALRPRQLDEYVGQEKVRDQLEIFIEAAKRRSEALDHVLLFGP 69

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++ARE+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VE
Sbjct: 70  PGLGKTTLAHIIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVE 129

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILYPA+ED+Q+D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL F
Sbjct: 130 EILYPALEDYQIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEF 189

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y+ E L  IV+R A L    +    A EIA RSRGTPRIA RLLRRVRD+AEV     IT
Sbjct: 190 YDAEQLSRIVRRSAALLNAQIDPAGALEIAKRSRGTPRIANRLLRRVRDYAEVKADGNIT 249

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             +ADAAL  L +D +GFD +D + L  I   F GGPVG++ ++A + E RD IED++EP
Sbjct: 250 AAVADAALAMLDVDPVGFDLMDRKLLEAILHKFDGGPVGVDNLAAAIGEERDTIEDVLEP 309

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           Y+IQQGF+QRTPRGR+   + ++H G+  P 
Sbjct: 310 YLIQQGFLQRTPRGRVATLLTYRHFGLSAPD 340


>gi|315634722|ref|ZP_07890006.1| crossover junction ATP-dependent DNA helicase RuvB [Aggregatibacter
           segnis ATCC 33393]
 gi|315476670|gb|EFU67418.1| crossover junction ATP-dependent DNA helicase RuvB [Aggregatibacter
           segnis ATCC 33393]
          Length = 337

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 192/331 (58%), Positives = 246/331 (74%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + ++S  V   ED     +RP+ L ++ GQ + C  +++FI+AA+ R +ALDH+L 
Sbjct: 1   MIEADRIISATVKLDEDVIDRAIRPKLLADYVGQPQVCEQMEIFIKAAQLRQDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            +EE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 AIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY + DL +IV R A    L + D AA EIA RSRGTPRIA RLLRRVRD+A+V +  
Sbjct: 181 LEFYSVPDLTSIVSRSAVCLQLKIDDSAAYEIARRSRGTPRIANRLLRRVRDYADVRNNG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT  IA AAL  L ID  GFD LD + LT +   F GGPVG++ ++A + E RD IED+
Sbjct: 241 VITETIAKAALSMLDIDDAGFDYLDRKLLTAVLERFDGGPVGLDNLAAAIGEERDTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           +EPY+IQQGF+QRTPRGR+     ++H GI+
Sbjct: 301 LEPYLIQQGFLQRTPRGRIATSTTYRHFGIE 331


>gi|83954485|ref|ZP_00963196.1| Holliday junction DNA helicase RuvB [Sulfitobacter sp. NAS-14.1]
 gi|83840769|gb|EAP79940.1| Holliday junction DNA helicase RuvB [Sulfitobacter sp. NAS-14.1]
          Length = 339

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 212/333 (63%), Positives = 256/333 (76%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M+D +  L  +    D D   LRP+ L+EF GQ EA +NLKVFI++AK R EA+DH LF 
Sbjct: 1   MIDSDPTLRPDPQPGDID-RALRPQMLDEFVGQAEARANLKVFIQSAKQRGEAMDHTLFH 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++ARELGV FR TSGPV+AKAGDLAA+LTNLE RDVLFIDEIHRL+  
Sbjct: 60  GPPGLGKTTLAQIMARELGVGFRMTSGPVLAKAGDLAAILTNLEARDVLFIDEIHRLNPA 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPA+EDF+LDL++GEGP+AR+V+I L  FTL+ ATTR+GLLT PL+DRFGIP RL
Sbjct: 120 VEEVLYPALEDFELDLVIGEGPAARTVRIELQPFTLVGATTRMGLLTTPLRDRFGIPTRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  ++L  IV R A+  G    +  A EIA R+RGTPRIAGRLLRRV DFA V     
Sbjct: 180 QFYTEDELFIIVDRNARKLGAPADEGGAREIAKRARGTPRIAGRLLRRVVDFAVVEGDGR 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +TR +AD AL RL +DK+G D  D RYL +IA N+ GGPVGIET+SA LSE RDA+E++I
Sbjct: 240 VTRALADMALTRLGVDKLGLDGADRRYLRLIAENYQGGPVGIETMSAALSESRDALEEVI 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY++QQG IQRTPRGR+L   AW HLG+  P 
Sbjct: 300 EPYLLQQGLIQRTPRGRMLAQKAWTHLGMAPPK 332


>gi|113460416|ref|YP_718478.1| Holliday junction DNA helicase RuvB [Haemophilus somnus 129PT]
 gi|170717674|ref|YP_001783496.1| Holliday junction DNA helicase RuvB [Haemophilus somnus 2336]
 gi|123031154|sp|Q0I1M3|RUVB_HAES1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|189046035|sp|B0UVK4|RUVB_HAES2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|112822459|gb|ABI24548.1| Holliday junction DNA helicase subunit RuvB [Haemophilus somnus
           129PT]
 gi|168825803|gb|ACA31174.1| Holliday junction DNA helicase RuvB [Haemophilus somnus 2336]
          Length = 335

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 188/331 (56%), Positives = 244/331 (73%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + ++S N   +D  I   +RP+ L ++ GQ +    +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEVDRIVSANAKVDDEYIDRAIRPKLLSDYIGQPQVREQMEIFIQAAKLRQDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            +EE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 AIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY +EDL +IV R A    L +  EA  EIA RSRGTPRIA RLLRRVRD+A+V +  
Sbjct: 181 LEFYSVEDLASIVTRSAVCLQLEIDVEAGQEIACRSRGTPRIANRLLRRVRDYADVKNGG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT  IA  AL  L +D  GFD +D + L  I   F GGPVG++ ++A + E RD IED+
Sbjct: 241 KITALIAQEALKMLDVDLAGFDFMDRKLLQAIIERFDGGPVGLDNLAAAIGEERDTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           +EPY+IQQGF+QRTPRGR+     ++H G++
Sbjct: 301 LEPYLIQQGFLQRTPRGRIATSRTYRHFGLE 331


>gi|220935402|ref|YP_002514301.1| Holliday junction DNA helicase B [Thioalkalivibrio sp. HL-EbGR7]
 gi|254767448|sp|B8GUJ4|RUVB_THISH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|219996712|gb|ACL73314.1| Holliday junction DNA helicase B [Thioalkalivibrio sp. HL-EbGR7]
          Length = 353

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 185/330 (56%), Positives = 244/330 (73%), Gaps = 1/330 (0%)

Query: 5   EGLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E L++   S++D A    +RP+ L ++ GQ      +++FI AA+AR EALDHVL  GPP
Sbjct: 3   ERLITPKGSRDDEAADFSIRPQRLADYVGQPAVREQMEIFIGAARARGEALDHVLIFGPP 62

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTL+ ++A ELGVN R +SGPV+ + GDLAALLTNLE RDVLF+DEIHRLS +VEE
Sbjct: 63  GLGKTTLSHIIAHELGVNLRHSSGPVLERPGDLAALLTNLEPRDVLFVDEIHRLSPVVEE 122

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LYPAMEDFQLD+++GEGP+ARS+K++L  FTL+ ATTR GLLT+PL+DRFGI  RL FY
Sbjct: 123 VLYPAMEDFQLDIVIGEGPAARSIKLDLPPFTLVGATTRAGLLTSPLRDRFGIVQRLEFY 182

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            ++DL  IVQR A + G+++    A EIA RSRGTPRIA RLLRRVRD+A++     IT 
Sbjct: 183 NVQDLTRIVQRAAGILGVSIEPAGAAEIARRSRGTPRIANRLLRRVRDYAQIKADGVITD 242

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           ++AD AL  L +D  GFD  D R L  +   F GGPVG+++++A + E R  IED++EPY
Sbjct: 243 QVADRALDLLDVDVQGFDAQDRRLLLAVIEKFDGGPVGVDSLAAAIGEERGTIEDVVEPY 302

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +IQQGF+ RTPRGR+    A+++ G+  P 
Sbjct: 303 LIQQGFLMRTPRGRMATSNAYRYFGLPAPR 332


>gi|227544209|ref|ZP_03974258.1| crossover junction endoribonuclease subunit B [Lactobacillus
           reuteri CF48-3A]
 gi|300908205|ref|ZP_07125671.1| crossover junction ATP-dependent DNA helicase RuvB [Lactobacillus
           reuteri SD2112]
 gi|227185802|gb|EEI65873.1| crossover junction endoribonuclease subunit B [Lactobacillus
           reuteri CF48-3A]
 gi|300894632|gb|EFK87988.1| crossover junction ATP-dependent DNA helicase RuvB [Lactobacillus
           reuteri SD2112]
          Length = 338

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 172/334 (51%), Positives = 237/334 (70%), Gaps = 2/334 (0%)

Query: 1   MMDREGLLSRNVS--QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M +  G+LS + S  +E+     LRP+ L E+ GQ +    L+V+I+AA++R EALDHVL
Sbjct: 1   MENDHGILSDHPSGEEENQVEITLRPQKLREYIGQPKIKHELEVYIKAAQSREEALDHVL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA V+A E+GVN ++TSGP I K GDL ALL  L+  DVLF+DEIHRL 
Sbjct: 61  LYGPPGLGKTTLAMVIANEMGVNIKTTSGPAIEKPGDLVALLNELKPGDVLFVDEIHRLP 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            +VEE+LY AMED+ +D+++GEGP+A  V   L  FTLI ATTR G+L+ PL+DRFGI  
Sbjct: 121 KVVEEMLYSAMEDYYIDIVIGEGPTAHPVHFPLPPFTLIGATTRAGMLSAPLRDRFGIVE 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
            +N+Y  ++L  I+ R AK+   ++ +E A E+++RSRGTPRIA RLL+RVRDFA+VA  
Sbjct: 181 HMNYYTQDELTKIIFRSAKIFHTSIQNEGAHELSLRSRGTPRIANRLLKRVRDFAQVAGK 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
           ++I   I   AL  L +D  G D++D + L  +   + GGPVG++TI+A + E  + IE+
Sbjct: 241 QSIDSAIVKQALSLLQVDDRGLDEIDRKMLLTMINFYHGGPVGLKTIAANIGEETNTIEE 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           + EPY++Q GFI RTPRGRL+ P A++HLGI+ P
Sbjct: 301 MYEPYLLQIGFISRTPRGRLVTPTAYEHLGIEYP 334


>gi|84516658|ref|ZP_01004017.1| Holliday junction DNA helicase RuvB [Loktanella vestfoldensis
           SKA53]
 gi|84509694|gb|EAQ06152.1| Holliday junction DNA helicase RuvB [Loktanella vestfoldensis
           SKA53]
          Length = 339

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 219/333 (65%), Positives = 260/333 (78%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M   +  L      EDAD   LRP+TL+EF GQ EA +NLKVFIE+A+ R EA+DH LF 
Sbjct: 1   MTQPDPTLRPERQPEDAD-RALRPQTLDEFIGQREARANLKVFIESARRRGEAMDHTLFH 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++ARELGV FR TSGPV+AKAGDLAA+LTNLE RDVLFIDEIHRL+  
Sbjct: 60  GPPGLGKTTLAQIMARELGVGFRMTSGPVLAKAGDLAAILTNLEARDVLFIDEIHRLNPA 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPA+EDF LDL++GEGP+AR+V+I L  FTL+ ATTR+GLLT PL+DRFGIP RL
Sbjct: 120 VEEVLYPALEDFALDLVIGEGPAARTVRIELQPFTLVGATTRMGLLTTPLRDRFGIPTRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  ++L  IV R A+L G    DE A EIA R+RGTPRIAGRLLRRV DFA V    T
Sbjct: 180 EFYTQDELHLIVTRAARLLGAPAADEGAREIARRARGTPRIAGRLLRRVVDFAIVEGDGT 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +T+EIAD AL RL +D MG DQ D RYL +IA ++ GGPVGIET+SA LSE RD++ED+I
Sbjct: 240 VTQEIADMALNRLGVDDMGLDQADRRYLRLIAESYAGGPVGIETLSAALSESRDSLEDVI 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY++Q+G IQRTPRGR+L   AW HLG+D P 
Sbjct: 300 EPYLLQKGLIQRTPRGRMLAQAAWTHLGLDAPR 332


>gi|188584493|ref|YP_001927938.1| Holliday junction DNA helicase RuvB [Methylobacterium populi BJ001]
 gi|179347991|gb|ACB83403.1| Holliday junction DNA helicase RuvB [Methylobacterium populi BJ001]
          Length = 388

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 229/328 (69%), Positives = 276/328 (84%), Gaps = 1/328 (0%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           LL+     +D D S +RP +L EF GQ  A +N+++FIEAAK   +ALDHVLFVGPPGLG
Sbjct: 45  LLNPERRADDVDQS-IRPLSLAEFIGQRAARANMQIFIEAAKKTGQALDHVLFVGPPGLG 103

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTTLAQ+VARELGVNFRSTSGPVIAKAGDLAA LTNLE+RDVLFIDEIHRL+  VEEILY
Sbjct: 104 KTTLAQIVARELGVNFRSTSGPVIAKAGDLAAQLTNLEERDVLFIDEIHRLNPAVEEILY 163

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           PAMED+QLDL++GEGP+ARSVKI L +FTL+ ATTR GLLT PL+DRFGIPIRL FYEI+
Sbjct: 164 PAMEDYQLDLIIGEGPAARSVKIELPKFTLVGATTRAGLLTTPLRDRFGIPIRLEFYEID 223

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +L+ IV+RGA++ GL +++E A EIA R+RGTPRIAGRLLRRVRDFA V  A+T++R IA
Sbjct: 224 ELELIVRRGARVLGLGMSEEGANEIAKRARGTPRIAGRLLRRVRDFAIVEDAQTVSRAIA 283

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           D AL  L +D +G D +D +YLT+IA +FGGGPVGIETI+A LSEPRDAIED+IEPY+IQ
Sbjct: 284 DRALQMLDVDPVGLDVMDRKYLTLIAASFGGGPVGIETIAAALSEPRDAIEDIIEPYLIQ 343

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           +GF+QRTPRGR+L P A++H+G   P R
Sbjct: 344 KGFVQRTPRGRVLTPHAFRHMGFAEPRR 371


>gi|240949539|ref|ZP_04753879.1| Holliday junction DNA helicase RuvB [Actinobacillus minor NM305]
 gi|240296112|gb|EER46773.1| Holliday junction DNA helicase RuvB [Actinobacillus minor NM305]
          Length = 332

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 187/328 (57%), Positives = 245/328 (74%), Gaps = 1/328 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + ++S     +E+     +RP+ L ++ GQ   C  +++FI+AAK R EALDH+L 
Sbjct: 1   MIEADRIISAAPKREEEIIDRAIRPKLLADYVGQPSVCQQMEIFIQAAKLRNEALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPYDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            +EE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 AIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY ++DL +IVQR A    L +++  A EIA RSRGTPRIA RLLRRVRD+A+V +  
Sbjct: 181 LEFYGVDDLTSIVQRSANCLNLNLSESGAHEIARRSRGTPRIANRLLRRVRDYADVRNNG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I+ EIA  AL  L +D  GFD +D++ L  I   F GGPVG++ ++A + E RD IED+
Sbjct: 241 IISSEIAKQALSMLDVDAEGFDFMDIKLLEAIVERFDGGPVGLDNLAAAIGEERDTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHL 327
           +EPY+IQQGF+QRTPRGR+     ++HL
Sbjct: 301 LEPYLIQQGFLQRTPRGRIATQRTYEHL 328


>gi|285019188|ref|YP_003376899.1| holliday junction resolvasome, helicase subunit protein
           [Xanthomonas albilineans GPE PC73]
 gi|283474406|emb|CBA16907.1| putative holliday junction resolvasome, helicase subunit protein
           [Xanthomonas albilineans]
          Length = 347

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 193/331 (58%), Positives = 242/331 (73%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           +M+R  + S    +++A  + +RP+ L+++ GQ      L ++IEAAKAR EALDHVL  
Sbjct: 3   LMER-IIASSATGEDEAVEASIRPKRLDDYLGQQPVREQLSIYIEAAKARGEALDHVLIF 61

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTL+ V+A ELGVN R TSGPVI KAGDLAALLTNL+  DVLF+DEIHRLS +
Sbjct: 62  GPPGLGKTTLSHVIANELGVNLRVTSGPVIEKAGDLAALLTNLQPHDVLFVDEIHRLSPV 121

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDFQ+D+M+GEGP+ARS+KI+L  FTLI ATTR GLLT PL+DRFGI  RL
Sbjct: 122 VEEVLYPAMEDFQIDIMIGEGPAARSIKIDLPPFTLIGATTRAGLLTAPLRDRFGIVQRL 181

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  E+L  IV+R A + G+A   +   EIA R+RGTPRIA RLLRRVRDFA+V     
Sbjct: 182 AFYTPEELARIVRRSAGILGIACDADGCAEIARRARGTPRIANRLLRRVRDFAQVRAGGH 241

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I   +A AA   L +D  GFD+LD R L  I   F GGPVG+E+++A LSE R  +ED+I
Sbjct: 242 IDLAVAQAATQMLKVDAEGFDELDRRLLRTIIDYFDGGPVGVESLAASLSEERGTLEDVI 301

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           EPY+IQQG++ RT RGR+    A+ HLG+  
Sbjct: 302 EPYLIQQGYLIRTARGRMATNKAYLHLGLQP 332


>gi|254360615|ref|ZP_04976764.1| crossover junction endonuclease RuvB [Mannheimia haemolytica
           PHL213]
 gi|153091155|gb|EDN73160.1| crossover junction endonuclease RuvB [Mannheimia haemolytica
           PHL213]
          Length = 334

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 185/331 (55%), Positives = 245/331 (74%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + ++S +   +E+     +RP+ L ++ GQ      +++FI+AAK R EALDH+L 
Sbjct: 1   MIEADRIISASPKREEEVIDRAIRPKLLADYVGQPSVHDQMEIFIKAAKLREEALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPYDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            +EE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ ATTR G LT+PL+DRFGI  R
Sbjct: 121 AIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY ++DL  IV+R A    L ++ + A E+A RSRGTPRIA RLLRRVRD+A+V +  
Sbjct: 181 LEFYSVDDLTLIVKRSADCLNLNLSADGAYEVARRSRGTPRIANRLLRRVRDYADVRNNG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT +IA  AL  L +D  GFD +D++ L  I   F GGPVG++ ++A + E RD IED+
Sbjct: 241 IITSDIAKQALAMLDVDSEGFDFMDIKLLQAIVERFDGGPVGLDNLAAAIGEERDTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           +EPY+IQQGF+QRTPRGR+     + HLGI 
Sbjct: 301 LEPYLIQQGFLQRTPRGRIATSRTYAHLGIT 331


>gi|290769836|gb|ADD61609.1| putative protein [uncultured organism]
          Length = 362

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 185/332 (55%), Positives = 229/332 (68%), Gaps = 2/332 (0%)

Query: 4   REGLLSRNVSQEDADISL--LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
              +   +   ED   S   LRP+TL E+ GQ +A  NLKVFIEAAK R E LDHVL  G
Sbjct: 13  ENRITDTSEIPEDTAESDNPLRPKTLSEYIGQEKAKENLKVFIEAAKIRGETLDHVLLYG 72

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTL+ ++A ELGV+ R TSGP I K GDLAALLTNL + DVLFIDEIHRLS  V
Sbjct: 73  PPGLGKTTLSGIIANELGVSMRITSGPAIEKPGDLAALLTNLNEGDVLFIDEIHRLSRSV 132

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILYP+MEDF +D++ G+G  A S  + L +FTL+ ATTR G LT PL+DRFG+ +RL 
Sbjct: 133 EEILYPSMEDFAIDIITGKGQMAASYHLPLPKFTLVGATTRAGQLTAPLRDRFGVVLRLE 192

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
            Y  E+L  IV+R A + G+ +  + A EIA RSRGTPRIA RLL+RVRDFA+V     I
Sbjct: 193 LYTPEELAQIVERSAGILGIKIEHDGALEIASRSRGTPRIANRLLKRVRDFAQVMSNGVI 252

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T E A  AL RL ID++G D+ D R L  I R + GGPVG+ET++A + E    IED+ E
Sbjct: 253 TLETARTALDRLEIDELGLDRNDRRMLEAIVRFYNGGPVGLETLAAAIGEEAVTIEDVYE 312

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           PY++Q GF+ RTPRGR +   A +HLG + P 
Sbjct: 313 PYLLQIGFVSRTPRGRCITAEACKHLGCEFPK 344


>gi|160942100|ref|ZP_02089415.1| hypothetical protein CLOBOL_06988 [Clostridium bolteae ATCC
           BAA-613]
 gi|158434991|gb|EDP12758.1| hypothetical protein CLOBOL_06988 [Clostridium bolteae ATCC
           BAA-613]
          Length = 335

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 168/330 (50%), Positives = 235/330 (71%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M+R  + +   ++++   + LRP+ L ++ GQ +  S L ++IEAAK R E LDHVLF G
Sbjct: 1   MERRIITTEVTAEDERIETTLRPQCLRDYVGQEKIKSTLNIYIEAAKTRGEPLDHVLFYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+G N + TSGP I K G++AA+L NL++ DVLF+DEIHRL+  V
Sbjct: 61  PPGLGKTTLAGIIANEMGTNMKVTSGPAIEKPGEMAAILNNLQEGDVLFVDEIHRLNRQV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMEDF +D+M+G+  +ARS++++L  FTL+ ATTR GLLT PL+DRFG+  RL 
Sbjct: 121 EEVLYPAMEDFAIDIMLGKDSTARSIRLDLPHFTLVGATTRAGLLTAPLRDRFGVIQRLE 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY  E+LK I+   A++ G+ +    A E+A RSRGTPR+A RLL+RVRDFA+V +   I
Sbjct: 181 FYTPEELKIIILHSARVLGVEIEAGGAMELARRSRGTPRLANRLLKRVRDFAQVKYDGVI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           TRE+ D AL  + +DK+G DQ D   L MI   F GGPVG++T++A L E    +E++ E
Sbjct: 241 TREVTDFALDIMDVDKLGLDQNDRNILLMIIEKFSGGPVGLDTLAAALGEDSGTLEEVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           PY++  G I RTPRGR+    A +HLG+++
Sbjct: 301 PYLLMNGLINRTPRGRMATETACRHLGLEM 330


>gi|50812277|ref|YP_054590.1| Holliday junction DNA helicase RuvB [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221310712|ref|ZP_03592559.1| Holliday junction DNA helicase RuvB [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221315036|ref|ZP_03596841.1| Holliday junction DNA helicase RuvB [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221319957|ref|ZP_03601251.1| Holliday junction DNA helicase RuvB [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221324238|ref|ZP_03605532.1| Holliday junction DNA helicase RuvB [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|321312302|ref|YP_004204589.1| Holliday junction DNA helicase RuvB [Bacillus subtilis BSn5]
 gi|3122842|sp|O32055|RUVB_BACSU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|6977806|emb|CAB75331.1| RuvB protein [Bacillus subtilis subsp. subtilis str. 168]
 gi|32468806|emb|CAB14733.2| Holliday junction DNA helicase, ATP-dependent component [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|291485184|dbj|BAI86259.1| Holliday junction DNA helicase B [Bacillus subtilis subsp. natto
           BEST195]
 gi|320018576|gb|ADV93562.1| Holliday junction DNA helicase RuvB [Bacillus subtilis BSn5]
          Length = 334

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 181/332 (54%), Positives = 233/332 (70%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD   + S   + E      LRP+ L ++ GQ +   NL+VFI+AAK R E LDHVL  G
Sbjct: 1   MDERLVSSEADNHESVIEQSLRPQNLAQYIGQHKVKENLRVFIDAAKMRQETLDHVLLYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA +VA E+GV  R+TSGP I + GDLAA+LT LE  DVLFIDEIHRL   +
Sbjct: 61  PPGLGKTTLASIVANEMGVELRTTSGPAIERPGDLAAILTALEPGDVLFIDEIHRLHRSI 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTRVGLLT PL+DRFG+  RL 
Sbjct: 121 EEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRVGLLTAPLRDRFGVMSRLE 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y  E+L  IV R A +  + +   +A EIA RSRGTPR+A RLLRRVRDFA+V     I
Sbjct: 181 YYTQEELADIVTRTADVFEVEIDKPSALEIARRSRGTPRVANRLLRRVRDFAQVLGDSRI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T +I+  AL RL +D++G D +D + L  +   F GGPVG++TISA + E    IED+ E
Sbjct: 241 TEDISQNALERLQVDRLGLDHIDHKLLMGMIEKFNGGPVGLDTISATIGEESHTIEDVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           PY++Q GFIQRTPRGR++ P  + H  ++ P 
Sbjct: 301 PYLLQIGFIQRTPRGRIVTPAVYHHFQMEAPR 332


>gi|254468426|ref|ZP_05081832.1| Holliday junction DNA helicase RuvB [beta proteobacterium KB13]
 gi|207087236|gb|EDZ64519.1| Holliday junction DNA helicase RuvB [beta proteobacterium KB13]
          Length = 342

 Score =  372 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 183/332 (55%), Positives = 239/332 (71%), Gaps = 1/332 (0%)

Query: 1   MMDREGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ +  ++    + E+     LRP  L+E+ GQ +    L++FI+AA+ R EALDHVL 
Sbjct: 1   MIEEDRFIATTPKENEEILEKSLRPADLDEYVGQEKIRDQLEIFIKAAQQRGEALDHVLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTL+ ++ARE+ V  + TSGPV+ KAGDLAALLTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLSHIIAREMNVGLKQTSGPVLEKAGDLAALLTNLEPNDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           I+EEILYPAMED  LD+M+G+GPSARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  R
Sbjct: 121 IIEEILYPAMEDNHLDIMIGDGPSARSVKLDLPPFTLVGATTRAGMLTNPLRDRFGIVSR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY  ++L  IV+R AKL  + + D  A EIA RSRGTPRIA RLLRRVRD+A V    
Sbjct: 181 LEFYSQDELIRIVKRSAKLLDIFIDDSGAAEIAKRSRGTPRIANRLLRRVRDYASVKADG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            +  + ADAAL  L +DK+G D +D   L  I   F GGPVG++ ++A + E ++ IED+
Sbjct: 241 NVNDKTADAALKMLDVDKIGLDNMDRALLLAIIEKFKGGPVGLDNLAAAIGEEKETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           IEPY+IQQG++ RTP+GR+   ++ +H  I I
Sbjct: 301 IEPYLIQQGYLMRTPKGRIATDLSLKHFNIPI 332


>gi|83943912|ref|ZP_00956369.1| Holliday junction DNA helicase RuvB [Sulfitobacter sp. EE-36]
 gi|83845159|gb|EAP83039.1| Holliday junction DNA helicase RuvB [Sulfitobacter sp. EE-36]
          Length = 344

 Score =  372 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 212/333 (63%), Positives = 256/333 (76%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M+D +  L  +    D D   LRP+ L+EF GQ EA +NLKVFI++AK R EA+DH LF 
Sbjct: 6   MIDSDPTLRPDPQPGDID-RALRPQMLDEFVGQAEARANLKVFIQSAKQRGEAMDHTLFH 64

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++ARELGV FR TSGPV+AKAGDLAA+LTNLE RDVLFIDEIHRL+  
Sbjct: 65  GPPGLGKTTLAQIMARELGVGFRMTSGPVLAKAGDLAAILTNLEARDVLFIDEIHRLNPA 124

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPA+EDF+LDL++GEGP+AR+V+I L  FTL+ ATTR+GLLT PL+DRFGIP RL
Sbjct: 125 VEEVLYPALEDFELDLVIGEGPAARTVRIELQPFTLVGATTRMGLLTTPLRDRFGIPTRL 184

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  ++L  IV R A+  G    +  A EIA R+RGTPRIAGRLLRRV DFA V     
Sbjct: 185 QFYTEDELFIIVDRNARKLGAPADEGGAREIAKRARGTPRIAGRLLRRVVDFALVEGDGR 244

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +TR +AD AL RL +DK+G D  D RYL +IA N+ GGPVGIET+SA LSE RDA+E++I
Sbjct: 245 VTRALADMALTRLGVDKLGLDGADRRYLRLIAENYQGGPVGIETMSAALSESRDALEEVI 304

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY++QQG IQRTPRGR+L   AW HLG+  P 
Sbjct: 305 EPYLLQQGLIQRTPRGRMLAQKAWTHLGMAPPK 337


>gi|197284987|ref|YP_002150859.1| Holliday junction DNA helicase RuvB [Proteus mirabilis HI4320]
 gi|227355391|ref|ZP_03839792.1| Holliday junction ATP-dependent DNA helicase [Proteus mirabilis
           ATCC 29906]
 gi|238693146|sp|B4ETP8|RUVB_PROMH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|194682474|emb|CAR42409.1| Holliday junction ATP-dependent DNA helicase [Proteus mirabilis
           HI4320]
 gi|227164615|gb|EEI49486.1| Holliday junction ATP-dependent DNA helicase [Proteus mirabilis
           ATCC 29906]
          Length = 336

 Score =  372 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 191/330 (57%), Positives = 245/330 (74%), Gaps = 2/330 (0%)

Query: 1   MMDREGLLSRNVSQ--EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M++ + L+S ++ Q  E+     +RP+ L E+ GQ +    +++FI+AAK R +ALDH+L
Sbjct: 1   MIEADRLISADIQQPEEEIIDRAIRPKLLAEYVGQPQVREQMEIFIQAAKLRHDALDHLL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA ++A E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS
Sbjct: 61  IFGPPGLGKTTLANIIANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLS 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            +VEEILYPAMED+QLD+M+GEGP+ARS+KI+L  FTL+ ATTR G LT+PL+DRFGI  
Sbjct: 121 PVVEEILYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLVGATTRAGSLTSPLRDRFGIVQ 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           RL FY ++DL+ IV R A   GL +T E A +IAMRSRGTPRI  RLLRRVRDFA+V   
Sbjct: 181 RLEFYNVDDLQHIVARSASFMGLEITAEGARQIAMRSRGTPRITNRLLRRVRDFAQVKGN 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             I  +IA  AL  L +D  GFD LD + L  I   F GGPVG++ ++A + E R+ IED
Sbjct: 241 GEIDEDIASKALDMLNVDAAGFDYLDRKLLFAIIDKFMGGPVGLDNLAAAIGEERETIED 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
           ++EPY+IQQGFIQRTPRGR+    A++H  
Sbjct: 301 VLEPYLIQQGFIQRTPRGRVATNHAYRHFN 330


>gi|291542960|emb|CBL16070.1| Holliday junction DNA helicase, RuvB subunit [Ruminococcus bromii
           L2-63]
          Length = 362

 Score =  372 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 185/332 (55%), Positives = 229/332 (68%), Gaps = 2/332 (0%)

Query: 4   REGLLSRNVSQEDADISL--LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
              +   +   ED   S   LRP+TL E+ GQ +A  NLKVFIEAAK R E LDHVL  G
Sbjct: 13  ENRITDTSEIPEDTAESDNPLRPKTLSEYIGQEKAKENLKVFIEAAKIRGETLDHVLLYG 72

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTL+ ++A ELGV+ R TSGP I K GDLAALLTNL + DVLFIDEIHRLS  V
Sbjct: 73  PPGLGKTTLSGIIANELGVSMRITSGPAIEKPGDLAALLTNLNEGDVLFIDEIHRLSRSV 132

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILYP+MEDF +D++ G+G  A S  + L +FTL+ ATTR G LT PL+DRFG+ +RL 
Sbjct: 133 EEILYPSMEDFAIDIITGKGQMAASYHLPLPKFTLVGATTRAGQLTAPLRDRFGVVLRLE 192

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
            Y  E+L  IV+R A + G+ +  + A EIA RSRGTPRIA RLL+RVRDFA+V     I
Sbjct: 193 LYTPEELAQIVERSAGILGIKIEHDGALEIASRSRGTPRIANRLLKRVRDFAQVMSNGVI 252

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T E A  AL RL ID++G D+ D R L  I R + GGPVG+ET++A + E    IED+ E
Sbjct: 253 TLETARTALDRLEIDELGLDRNDRRMLDAIVRFYNGGPVGLETLAAAIGEEAVTIEDVYE 312

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           PY++Q GF+ RTPRGR +   A +HLG + P 
Sbjct: 313 PYLLQIGFVSRTPRGRCITAEACKHLGCEFPK 344


>gi|315651979|ref|ZP_07904981.1| crossover junction ATP-dependent DNA helicase RuvB [Eubacterium
           saburreum DSM 3986]
 gi|315485808|gb|EFU76188.1| crossover junction ATP-dependent DNA helicase RuvB [Eubacterium
           saburreum DSM 3986]
          Length = 332

 Score =  372 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 170/329 (51%), Positives = 233/329 (70%), Gaps = 1/329 (0%)

Query: 4   REGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
            + ++S  +++ED  I   LRP+ L E+ GQ +   NLKV+I+AAK R E+LDHVLF GP
Sbjct: 2   EKRIISTEITKEDKQIEKSLRPQFLNEYIGQEKIRKNLKVYIDAAKFRNESLDHVLFYGP 61

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTL  ++A E+G N + TSGP I K GD+AA+L NL + DVLF+DEIHRL+  VE
Sbjct: 62  PGLGKTTLCNIIANEMGTNLKVTSGPAIEKPGDMAAILNNLNEGDVLFVDEIHRLNRQVE 121

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMEDF +D+++G+   ARS++++L +FTL+ ATTR GLLT PL+DRFG+  +L F
Sbjct: 122 EVLYPAMEDFVIDIVIGKDAGARSIRLDLPKFTLVGATTRAGLLTAPLRDRFGVVQKLEF 181

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  ++LK IV+R A + G+ + +  A EIA RSRGTPR+A RLL+RVRDFA+V +   I 
Sbjct: 182 YNTDELKEIVRRSATVLGVEIDNNGAIEIARRSRGTPRLANRLLKRVRDFAQVKYNGIID 241

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           + +AD AL  L +DK+G D  D   L  I   FGGGPVG+ T+SA + E    +E++ EP
Sbjct: 242 KGVADFALDTLDVDKLGLDNNDRMILLTIIEKFGGGPVGLNTLSAAIGEDAGTLEEVYEP 301

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           Y++  G I RTP GR+    A+ HLGI++
Sbjct: 302 YLLMNGLINRTPGGRVATENAYIHLGIEM 330


>gi|115526755|ref|YP_783666.1| Holliday junction DNA helicase RuvB [Rhodopseudomonas palustris
           BisA53]
 gi|115520702|gb|ABJ08686.1| Holliday junction DNA helicase RuvB [Rhodopseudomonas palustris
           BisA53]
          Length = 371

 Score =  372 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 227/334 (67%), Positives = 272/334 (81%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M     +++     +D   + LRP+TL EF GQ +A +NL++FI+AA+ R EALDHVLFV
Sbjct: 25  MTPPSRIVTPERRADDVGDTALRPQTLAEFVGQQQARANLQIFIDAARKRQEALDHVLFV 84

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ+VARELGV FR+TSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRLS  
Sbjct: 85  GPPGLGKTTLAQIVARELGVGFRATSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSPA 144

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDFQLDL++GEGP+ARSVKI LS+FTL+ ATTR GLLTNPL+DRFGIPIRL
Sbjct: 145 VEEVLYPAMEDFQLDLIIGEGPAARSVKIELSKFTLVGATTRAGLLTNPLRDRFGIPIRL 204

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           NFY +E+L+ IV RGA++ G  +T + A EIA R+RGTPRIAGRLLRRVRDFA  A A  
Sbjct: 205 NFYTVEELEGIVSRGARVLGTGITPDGANEIARRARGTPRIAGRLLRRVRDFASAADAAA 264

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I R IAD AL  L +D  G D +D RYL+ IA N+GGGPVG+ET++A LSEPRDAIED+I
Sbjct: 265 IDRRIADHALSALEVDAAGLDAMDRRYLSTIALNYGGGPVGVETMAAALSEPRDAIEDII 324

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           EP++IQ G++QRTPRGRLL   A++HLG+  P R
Sbjct: 325 EPFLIQCGYLQRTPRGRLLTSHAFKHLGLAEPSR 358


>gi|331091225|ref|ZP_08340066.1| Holliday junction ATP-dependent DNA helicase ruvB [Lachnospiraceae
           bacterium 2_1_46FAA]
 gi|330404672|gb|EGG84211.1| Holliday junction ATP-dependent DNA helicase ruvB [Lachnospiraceae
           bacterium 2_1_46FAA]
          Length = 333

 Score =  372 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 168/329 (51%), Positives = 240/329 (72%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M +  + + ++ ++    + LRP+ L ++ GQ +A   L+++I+AAK R EALDHVLF G
Sbjct: 1   MGKRIITTESLEEDLKIENHLRPQLLTDYIGQEKAKEMLRIYIQAAKERNEALDHVLFYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+GVN + TSGP I K G++AA+L NL++ DVLF+DEIHRL+  V
Sbjct: 61  PPGLGKTTLAGIIANEMGVNLKITSGPAIEKPGEMAAILNNLQEGDVLFVDEIHRLNRQV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILYPAMED+ +D+M+G+G +ARS++++L +FTL+ ATTR G+LT PL+DRFG+  RL 
Sbjct: 121 EEILYPAMEDYAIDIMIGKGANARSIRLDLPQFTLVGATTRAGMLTAPLRDRFGVVQRLE 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY  ++L+TI+ R A + G+ V +  A E+A RSRGTPR+A RLL+RVRDFA++ +   I
Sbjct: 181 FYTEKELQTIIIRSAGVMGVEVDENGAMEMARRSRGTPRLANRLLKRVRDFAQIKYDGII 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T E A+ AL  L +DK G D +D   L  + + F GGPVG++T++A + E    IED+ E
Sbjct: 241 TEEAANYALDLLEVDKYGLDHIDRNILLTMIQKFNGGPVGLDTLAASIGEDSGTIEDVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           PY+I+ GF+ RTPRGR++   A+ HLGI 
Sbjct: 301 PYLIKNGFLHRTPRGRVVTSFAYHHLGIS 329


>gi|255320812|ref|ZP_05361987.1| holliday junction DNA helicase RuvB [Acinetobacter radioresistens
           SK82]
 gi|262379412|ref|ZP_06072568.1| Holliday junction DNA helicase RuvB [Acinetobacter radioresistens
           SH164]
 gi|255302189|gb|EET81431.1| holliday junction DNA helicase RuvB [Acinetobacter radioresistens
           SK82]
 gi|262298869|gb|EEY86782.1| Holliday junction DNA helicase RuvB [Acinetobacter radioresistens
           SH164]
          Length = 334

 Score =  372 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 183/330 (55%), Positives = 242/330 (73%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           ++ L+S +   ED     +RP +L+++ GQ      + +FI AA+ R EALDH L  GPP
Sbjct: 2   QDRLISGSEKPEDHFDRAIRPTSLDDYIGQPVVREQMGIFIGAARGRGEALDHTLIFGPP 61

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++ARE+G N +STSGPV+ +AGDLAA+LTNLE+ DVLFIDEIHRLS ++EE
Sbjct: 62  GLGKTTLANIIAREMGGNLKSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPVIEE 121

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILYPAMED+QLD+M+GEGP+ARS+K++L  FTL+AATTR GLLT+PL+DRFGI  RL FY
Sbjct: 122 ILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRLEFY 181

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            +EDL  IV R A L  + +T E + E+A R+RGTPRIA RLLRRVRD+A+V     +T+
Sbjct: 182 SVEDLTHIVTRSASLMDVPITQEGSREVARRARGTPRIANRLLRRVRDYAQVKGTGEVTQ 241

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           E+A  AL  L +DK G D LD RYL+M+   F GGP G+E ++A ++E    +ED+IEPY
Sbjct: 242 EMAQRALDMLNVDKDGLDTLDRRYLSMLLERFDGGPAGVEALAAAMAEDSGTLEDVIEPY 301

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +IQQG+  RT RGR+   +A+   G+  P 
Sbjct: 302 LIQQGYAMRTARGRIATNMAYLQFGMTPPE 331


>gi|255526660|ref|ZP_05393565.1| Holliday junction DNA helicase RuvB [Clostridium carboxidivorans
           P7]
 gi|296187165|ref|ZP_06855562.1| Holliday junction DNA helicase RuvB [Clostridium carboxidivorans
           P7]
 gi|255509640|gb|EET85975.1| Holliday junction DNA helicase RuvB [Clostridium carboxidivorans
           P7]
 gi|296048200|gb|EFG87637.1| Holliday junction DNA helicase RuvB [Clostridium carboxidivorans
           P7]
          Length = 348

 Score =  372 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 175/329 (53%), Positives = 241/329 (73%), Gaps = 1/329 (0%)

Query: 1   MMDREGLLSR-NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M + + +++  N+  +  +   LRP+ + E+ GQ +    LK+FIEAAK R EALDHVL 
Sbjct: 1   MNEEDRIVTPLNIVGDTENEYSLRPKRINEYIGQKKVKEKLKIFIEAAKKRKEALDHVLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A E+G N + TSGP I +AGDLAA+LT+L D DVLFIDEIHRLS 
Sbjct: 61  YGPPGLGKTTLANIIATEMGGNLKVTSGPAIERAGDLAAILTSLNDYDVLFIDEIHRLSR 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEEILYPAMED+ LD+++G+G +A+S++++L +FTLI ATTRVGLLT+PL+DRFG+   
Sbjct: 121 NVEEILYPAMEDYALDIVIGKGAAAKSIRLDLPKFTLIGATTRVGLLTSPLRDRFGVMCP 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           + FYE ++LK I+ R A++ G+ + + AA EI  RSRGTPRIA RLL+RVRD+++V    
Sbjct: 181 MEFYENDELKEIIVRSAQILGVKIEENAALEIGSRSRGTPRIANRLLKRVRDYSDVKGNG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            +  E+  AAL  L +D+ GFD +D + LT I  NF GGPVG+ET++  + E  D I+D+
Sbjct: 241 LVDLEVTKAALELLDVDEEGFDSIDNKILTAIIDNFKGGPVGLETLAYFIGEELDTIQDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
            EPY++Q+GFI RTPRGR+    A++HL 
Sbjct: 301 YEPYLLQKGFIIRTPRGRVASDSAYKHLN 329


>gi|56421126|ref|YP_148444.1| Holliday junction DNA helicase RuvB [Geobacillus kaustophilus
           HTA426]
 gi|81819658|sp|Q5KWR0|RUVB_GEOKA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|56380968|dbj|BAD76876.1| holliday junction DNA helicase [Geobacillus kaustophilus HTA426]
          Length = 333

 Score =  372 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 179/332 (53%), Positives = 239/332 (71%), Gaps = 1/332 (0%)

Query: 4   REGLLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
            E L+S  V  +E A    LRP+ L E+ GQ +   NLKVFIEAAK R E LDHVL  GP
Sbjct: 2   EERLVSGEVLGEETALEPSLRPQYLHEYIGQDKIKENLKVFIEAAKLREETLDHVLLYGP 61

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++A E+GV  R+TSGP + + GDLAALLT+LE  DVLFIDEIHRL   VE
Sbjct: 62  PGLGKTTLAVIIANEMGVKLRATSGPALERPGDLAALLTSLEPGDVLFIDEIHRLPRAVE 121

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMED+ LD+ +G+GP AR+++++L  FTL+ ATTR G L+ PL+DRFG+  RL +
Sbjct: 122 EVLYPAMEDYCLDITIGKGPDARTLRLDLPPFTLVGATTRAGALSAPLRDRFGVISRLEY 181

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y ++ L  I++R A +  + +  EAA E+A R+RGTPRIA RLLRRVRDFA+V     IT
Sbjct: 182 YHVDQLAQIIERAAAILQIGIEREAALELARRARGTPRIANRLLRRVRDFAQVRGEGGIT 241

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             +A  AL RL +D++G DQ+D + L+ +   F GGPVG+ET++A + E    IE++ EP
Sbjct: 242 LPLAVEALERLQVDRLGLDQIDHKLLSAMIEKFAGGPVGLETLAAVIGEEAQTIEEVYEP 301

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           Y++Q G +QRTPRGR++ P A+ HLG+++P R
Sbjct: 302 YLMQIGLLQRTPRGRVVTPAAYTHLGMEVPKR 333


>gi|254487635|ref|ZP_05100840.1| Holliday junction DNA helicase RuvB [Roseobacter sp. GAI101]
 gi|214044504|gb|EEB85142.1| Holliday junction DNA helicase RuvB [Roseobacter sp. GAI101]
          Length = 339

 Score =  372 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 212/333 (63%), Positives = 256/333 (76%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M++ +  L  +    D D   LRP+ L+EF GQ EA SNLKVFI++AK R EA+DH LF 
Sbjct: 1   MIESDPTLRPDPMPGDFD-RALRPQLLDEFVGQAEARSNLKVFIQSAKQRGEAMDHTLFH 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++ARELGV FR TSGPV+AKAGDLAA+LTNLE RDVLFIDEIHRL+  
Sbjct: 60  GPPGLGKTTLAQIMARELGVGFRMTSGPVLAKAGDLAAILTNLEARDVLFIDEIHRLNPA 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPA+EDF+LDL++GEGP+AR+V+I L  FTL+ ATTR+GLLT PL+DRFGIP RL
Sbjct: 120 VEEVLYPALEDFELDLVIGEGPAARTVRIELQPFTLVGATTRMGLLTTPLRDRFGIPTRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  ++L  IV R A+  G    +  A EIA R+RGTPRIAGRLLRRV DFA V     
Sbjct: 180 QFYTEDELFIIVDRNARKLGAPADEGGAREIAKRARGTPRIAGRLLRRVVDFAVVEGDGR 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +TRE+AD AL RL +D +G D  D RYL MIA N+ GGPVGIET+SA LSE RDA+E++I
Sbjct: 240 VTRELADMALTRLGVDYLGLDGADRRYLRMIAENYQGGPVGIETMSAALSESRDALEEVI 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EP+++QQG IQRTPRGR+L   AW HLG+  P 
Sbjct: 300 EPFLLQQGLIQRTPRGRMLAQKAWTHLGMAPPK 332


>gi|167837836|ref|ZP_02464719.1| Holliday junction DNA helicase B [Burkholderia thailandensis
           MSMB43]
          Length = 356

 Score =  372 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 197/331 (59%), Positives = 246/331 (74%), Gaps = 2/331 (0%)

Query: 5   EGLL--SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           E ++  +   S E+A    LRPR L+E+ GQ +    L++FIEAAK RAEALDHVL  GP
Sbjct: 10  ERIIAATPASSHEEAFERALRPRQLDEYVGQEKVRDQLEIFIEAAKRRAEALDHVLLFGP 69

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++ARE+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VE
Sbjct: 70  PGLGKTTLAHIIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVE 129

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILYPA+ED+Q+D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL F
Sbjct: 130 EILYPALEDYQIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEF 189

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y+ E L  IV+R A L    +    A EIA RSRGTPRIA RLLRRVRD+AEV     IT
Sbjct: 190 YDAEQLSRIVRRSAALLNAQIDPAGALEIAKRSRGTPRIANRLLRRVRDYAEVKADGNIT 249

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             +ADAAL  L +D +GFD +D + L  I   F GGPVG++ ++A + E RD IED++EP
Sbjct: 250 AAVADAALAMLDVDPVGFDLMDRKLLEAILHKFDGGPVGVDNLAAAIGEERDTIEDVLEP 309

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           Y+IQQGF+QRTPRGR+   + ++H G+  P 
Sbjct: 310 YLIQQGFLQRTPRGRVATLLTYRHFGLAAPD 340


>gi|319404770|emb|CBI78371.1| Holliday junction DNA helicase RuvB [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 360

 Score =  372 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 231/330 (70%), Positives = 272/330 (82%), Gaps = 1/330 (0%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           D   LL       D D   LRP+TL++F GQ  A +NLK+FIEAA+ R EALDHVLFVGP
Sbjct: 5   DSHRLLGSIPLPNDPD-RSLRPQTLDDFIGQEAARANLKIFIEAARTRHEALDHVLFVGP 63

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTL+Q++A+ELGVNFRSTSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRL+  +E
Sbjct: 64  PGLGKTTLSQIMAKELGVNFRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLNPAIE 123

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILYPAMED+QLDL++GEGP+ARSVKI+L++FTL+AATTR+GLLT PL+DRFGIPIRLNF
Sbjct: 124 EILYPAMEDYQLDLIIGEGPAARSVKIDLAKFTLVAATTRLGLLTTPLRDRFGIPIRLNF 183

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y IE+L+ IVQR A+L  + ++D+ A EIA RSRGTPRIAGRLLRRV DFA V  A+ I 
Sbjct: 184 YTIEELEYIVQRNARLFSVQISDDGAHEIARRSRGTPRIAGRLLRRVCDFALVKKAEKID 243

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             IADAAL RL +D +G D LD RYL +IA+ F GGPVGIETI+A LSEPRDAIED+IEP
Sbjct: 244 HTIADAALSRLEVDHLGLDPLDRRYLILIAQTFLGGPVGIETIAAALSEPRDAIEDIIEP 303

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           Y++QQGFIQRT RGR+L   AW HL +  P
Sbjct: 304 YLLQQGFIQRTARGRILTEKAWTHLRLCPP 333


>gi|229543703|ref|ZP_04432763.1| Holliday junction DNA helicase RuvB [Bacillus coagulans 36D1]
 gi|229328123|gb|EEN93798.1| Holliday junction DNA helicase RuvB [Bacillus coagulans 36D1]
          Length = 332

 Score =  372 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 176/331 (53%), Positives = 232/331 (70%), Gaps = 1/331 (0%)

Query: 4   REGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
            + ++S   ++++    + LRP+TL ++ GQ E   NL VFIEAAK R E LDHVL  GP
Sbjct: 2   EDRVVSGEANEQEVSFEMSLRPQTLAQYIGQDEVKHNLAVFIEAAKGRRETLDHVLLYGP 61

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA V+A E+G N R+TSGP I + GDLA++LT LE  +VLFIDEIHRL   +E
Sbjct: 62  PGLGKTTLATVIANEMGANIRTTSGPAIERPGDLASVLTALEPGEVLFIDEIHRLPKAIE 121

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMEDF LD+++G+G  ARS++++L  FTLI ATTR G ++ PL+DRFG+  RL +
Sbjct: 122 EVLYPAMEDFCLDIVIGKGSGARSIRLDLPPFTLIGATTRAGSVSAPLRDRFGVISRLEY 181

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y    L  IV R A +   A+  E A EIA RSRGTPRIA RLLRRVRDFA+V     +T
Sbjct: 182 YNEAQLAEIVLRTAGILETAIEPEGAAEIARRSRGTPRIANRLLRRVRDFAQVKGDGKVT 241

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            EIA+ AL  L +DK G D +D + L  I   F GGPVG++TI+A + E R+ IED+ EP
Sbjct: 242 LEIANYALELLQVDKRGLDHIDHKLLKAIIERFRGGPVGLDTIAASIGEERETIEDVYEP 301

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           Y++Q GF+QRTPRGR+  P+ + H  +++P 
Sbjct: 302 YLLQIGFLQRTPRGRVATPLCYAHFHMEVPE 332


>gi|107021765|ref|YP_620092.1| Holliday junction DNA helicase RuvB [Burkholderia cenocepacia AU
           1054]
 gi|116688711|ref|YP_834334.1| Holliday junction DNA helicase B [Burkholderia cenocepacia HI2424]
 gi|170732008|ref|YP_001763955.1| Holliday junction DNA helicase RuvB [Burkholderia cenocepacia
           MC0-3]
 gi|254246309|ref|ZP_04939630.1| Holliday junction DNA helicase RuvB [Burkholderia cenocepacia
           PC184]
 gi|123245284|sp|Q1BZ36|RUVB_BURCA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|166231467|sp|A0K4L4|RUVB_BURCH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|238688561|sp|B1JVV3|RUVB_BURCC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|105891954|gb|ABF75119.1| Holliday junction DNA helicase RuvB [Burkholderia cenocepacia AU
           1054]
 gi|116646800|gb|ABK07441.1| Holliday junction DNA helicase RuvB [Burkholderia cenocepacia
           HI2424]
 gi|124871085|gb|EAY62801.1| Holliday junction DNA helicase RuvB [Burkholderia cenocepacia
           PC184]
 gi|169815250|gb|ACA89833.1| Holliday junction DNA helicase RuvB [Burkholderia cenocepacia
           MC0-3]
          Length = 356

 Score =  372 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 193/325 (59%), Positives = 242/325 (74%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           +   S E+     LRPR L+++ GQ +    L++FIEAAK R+E LDHVL  GPPGLGKT
Sbjct: 17  TPASSHEEVFERALRPRQLDDYVGQEKVRGQLEIFIEAAKRRSEPLDHVLLFGPPGLGKT 76

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           TLA ++ARE+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA
Sbjct: 77  TLAHIIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPA 136

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +ED+Q+D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY+ E L
Sbjct: 137 LEDYQIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYDAEQL 196

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             IV+R A L    +    A EIA R+RGTPRIA RLLRRVRDFAEV     IT  +ADA
Sbjct: 197 SRIVRRSASLLNAQIDPNGALEIAKRARGTPRIANRLLRRVRDFAEVKADGQITAAVADA 256

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL  L +D +GFD +D + L  I   F GGPVGI+ ++A + E RD IED++EPY+IQQG
Sbjct: 257 ALAMLDVDPVGFDLMDRKLLEAILYKFDGGPVGIDNLAAAIGEERDTIEDVLEPYLIQQG 316

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIPH 333
           F+QRTPRGR+   + ++H G+ +P 
Sbjct: 317 FLQRTPRGRVATLLTYRHFGLSVPD 341


>gi|206561677|ref|YP_002232442.1| Holliday junction DNA helicase RuvB [Burkholderia cenocepacia
           J2315]
 gi|238693125|sp|B4EES7|RUVB_BURCJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|198037719|emb|CAR53662.1| holliday junction DNA helicase [Burkholderia cenocepacia J2315]
          Length = 356

 Score =  371 bits (953), Expect = e-101,   Method: Composition-based stats.
 Identities = 193/325 (59%), Positives = 242/325 (74%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           +   S E+     LRPR L+++ GQ +    L++FIEAAK R+E LDHVL  GPPGLGKT
Sbjct: 17  TPASSHEEVFERALRPRQLDDYVGQEKVRGQLEIFIEAAKRRSEPLDHVLLFGPPGLGKT 76

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           TLA ++ARE+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA
Sbjct: 77  TLAHIIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPA 136

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +ED+Q+D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY+ + L
Sbjct: 137 LEDYQIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYDADQL 196

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             IV+R A L    +    A EIA RSRGTPRIA RLLRRVRDFAEV     IT  +ADA
Sbjct: 197 SRIVRRSASLLNAQIDPNGALEIAKRSRGTPRIANRLLRRVRDFAEVKADGQITAAVADA 256

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL  L +D +GFD +D + L  I   F GGPVGI+ ++A + E RD IED++EPY+IQQG
Sbjct: 257 ALAMLDVDPVGFDLMDRKLLEAILYKFDGGPVGIDNLAAAIGEERDTIEDVLEPYLIQQG 316

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIPH 333
           F+QRTPRGR+   + ++H G+ +P 
Sbjct: 317 FLQRTPRGRVATLLTYRHFGLSVPD 341


>gi|309388951|gb|ADO76831.1| Holliday junction DNA helicase subunit RuvB [Halanaerobium
           praevalens DSM 2228]
          Length = 335

 Score =  371 bits (953), Expect = e-101,   Method: Composition-based stats.
 Identities = 177/330 (53%), Positives = 238/330 (72%), Gaps = 1/330 (0%)

Query: 1   MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M +   ++S    ++D  +   LRP  L E+ GQ ++   LK+FI+AAK R EALDHV+ 
Sbjct: 1   MENERRVVSPKQKKDDNSLDKGLRPLNLNEYVGQSKSKEKLKIFIQAAKDREEALDHVML 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A EL VN   TSGP I + GDLA++LTNL+  DVLFIDEIHRL+ 
Sbjct: 61  YGPPGLGKTTLANIIANELNVNIHQTSGPAIERPGDLASILTNLQPSDVLFIDEIHRLNK 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           IVEE+LYPAMED+ LD+++G+GPSARSV+++L+ FTL+ ATT+ G L++PL+DRFG+  R
Sbjct: 121 IVEEVLYPAMEDYCLDIIIGKGPSARSVRLDLAPFTLVGATTKAGRLSSPLRDRFGVINR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY  ++L+ IV R A +  + +    A EIA RSRGTPRIA RLL+RVRDFAEV    
Sbjct: 181 LEFYNQKELQKIVTRSAAILKIEIVPHGALEIARRSRGTPRIANRLLKRVRDFAEVKADG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I RE+ D+AL  L ID++G D++D + L  I   F GGPVG+ T++A +SE  + IED+
Sbjct: 241 IINREVVDSALKLLEIDELGLDRIDHKLLETIILKFRGGPVGLNTLAAAISEETETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
            EPY++Q GF++RTPRGR+    A+QHL I
Sbjct: 301 YEPYLLQLGFLERTPRGRVATAKAYQHLNI 330


>gi|85709395|ref|ZP_01040460.1| Holliday junction resolvasome helicase subunit [Erythrobacter sp.
           NAP1]
 gi|85688105|gb|EAQ28109.1| Holliday junction resolvasome helicase subunit [Erythrobacter sp.
           NAP1]
          Length = 347

 Score =  371 bits (953), Expect = e-101,   Method: Composition-based stats.
 Identities = 211/332 (63%), Positives = 255/332 (76%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D +  +    +Q     + LRP+ L EF GQ  A  NL+VFI++A+AR EA+DH LF 
Sbjct: 1   MSDLDPPIHSGENQPGDPDTALRPKRLAEFIGQEAAKDNLRVFIDSARARGEAMDHTLFH 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ+VA ELGV FR+TSGPVIAKAGDLAALLTNLE  DVLFIDEIHRL+ +
Sbjct: 61  GPPGLGKTTLAQIVAGELGVGFRATSGPVIAKAGDLAALLTNLEPHDVLFIDEIHRLNPV 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMED  LD+++GEGPSARSV+I+L  FTL+ ATTR GLLT PL+DRFGIP+RL
Sbjct: 121 VEEVLYPAMEDRALDIIIGEGPSARSVRIDLPPFTLVGATTRQGLLTTPLRDRFGIPVRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  ++L  +V RGA+L GL +    A EIA RSRGTPR+AGRLLRRVRDFA+VA   T
Sbjct: 181 QFYTHDELDQVVTRGARLLGLDIEASGAREIARRSRGTPRVAGRLLRRVRDFAQVAGQVT 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +TR +AD AL RL ID++G D +D RYLTMIA  + GGPVG+  ISAGLSE RD +E++I
Sbjct: 241 VTRAMADDALTRLEIDRLGLDAMDRRYLTMIAETYKGGPVGVAAISAGLSEQRDTVEEVI 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EPY+IQ G I RT RGR+L    W+HLG+  P
Sbjct: 301 EPYLIQLGLIARTERGRMLNDAGWEHLGVAKP 332


>gi|330811392|ref|YP_004355854.1| Holliday junction ATP-dependent DNA helicase [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327379500|gb|AEA70850.1| Holliday junction ATP-dependent DNA helicase [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 353

 Score =  371 bits (953), Expect = e-101,   Method: Composition-based stats.
 Identities = 191/337 (56%), Positives = 249/337 (73%), Gaps = 3/337 (0%)

Query: 1   MMDREGLLSRN---VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M++ + L++       +E+     +RP +L ++ GQ      +++FI+AA+ R+E+LDH 
Sbjct: 1   MIEADRLIAATGAPRDREEIQDRAIRPVSLADYIGQPTVREQMELFIQAARGRSESLDHT 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTLA ++A+E+GV+ +STSGPV+ + GDLAALLTNLE  DVLFIDEIHRL
Sbjct: 61  LIFGPPGLGKTTLANIIAQEMGVSIKSTSGPVLERPGDLAALLTNLEPHDVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           S IVEE+LYPAMEDFQLD+M+GEGP+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI 
Sbjct: 121 SPIVEEVLYPAMEDFQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIV 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            RL FY   DL TIV R A + GL +  + A EIA R+RGTPRIA RLLRRVRDFAEV  
Sbjct: 181 QRLEFYNNADLATIVSRSAGILGLPLDPDGAYEIARRARGTPRIANRLLRRVRDFAEVRA 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
              IT+ IAD AL  L ID+ GFD  D R L  +   F GGPVG+++++A +SE R  IE
Sbjct: 241 KGHITKPIADLALNLLDIDERGFDHQDRRLLLTMIEKFDGGPVGVDSLAAAISEERHTIE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           D++EPY+IQQG+I RTPRGR++   A+ H G++IP R
Sbjct: 301 DVLEPYLIQQGYIMRTPRGRVVTRHAYLHFGLNIPTR 337


>gi|311069259|ref|YP_003974182.1| Holliday junction DNA helicase RuvB [Bacillus atrophaeus 1942]
 gi|310869776|gb|ADP33251.1| Holliday junction DNA helicase RuvB [Bacillus atrophaeus 1942]
          Length = 334

 Score =  371 bits (953), Expect = e-101,   Method: Composition-based stats.
 Identities = 183/332 (55%), Positives = 235/332 (70%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD   + S   + E A    LRP++L ++ GQ +   NL+VFI+AAK R E LDHVL  G
Sbjct: 1   MDERLVSSEADNHESAIEQSLRPQSLVQYIGQKKVKENLRVFIDAAKMREETLDHVLLYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA +VA E+GV  R+TSGP I + GDLAA+LT LE  DVLFIDEIHRL   +
Sbjct: 61  PPGLGKTTLASIVANEMGVEMRTTSGPAIERPGDLAAILTALEPGDVLFIDEIHRLHRSI 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTRVGLLT PL+DRFG+  RL 
Sbjct: 121 EEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRVGLLTAPLRDRFGVLSRLE 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y  E+L  IV R A L  + +   +A EIA RSRGTPR+A RLLRRVRDFA+V     I
Sbjct: 181 YYTQEELSDIVVRTADLFEVEIDKPSALEIARRSRGTPRVANRLLRRVRDFAQVLGDSRI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T +IA  AL RL +D++G D +D + L  +   F GGPVG++TISA + E    IED+ E
Sbjct: 241 TDDIAQDALERLQVDRLGLDHIDHKLLMGMIEKFSGGPVGLDTISATIGEEPHTIEDVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           PY++Q GF+QRTPRGR++ P  + H  ++ P 
Sbjct: 301 PYLLQIGFLQRTPRGRIVTPAVYHHFNMEAPR 332


>gi|118594339|ref|ZP_01551686.1| Holliday junction DNA helicase RuvB [Methylophilales bacterium
           HTCC2181]
 gi|118440117|gb|EAV46744.1| Holliday junction DNA helicase RuvB [Methylophilales bacterium
           HTCC2181]
          Length = 336

 Score =  371 bits (953), Expect = e-101,   Method: Composition-based stats.
 Identities = 184/336 (54%), Positives = 241/336 (71%), Gaps = 2/336 (0%)

Query: 1   MMDREGLLSRNVSQ--EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M++ +  +    S   E+     LRP+ L+E+ GQ +    L++FI AAK R EALDHVL
Sbjct: 1   MIEPDRFVDPQTSDVAEEGVERALRPKDLQEYVGQEKTRDQLEIFIGAAKNREEALDHVL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA ++A+E+GVN R TSGPV+ K GDLAA+L+NLE  DVLFIDEIHRLS
Sbjct: 61  LFGPPGLGKTTLAHIIAKEMGVNLRQTSGPVLEKTGDLAAILSNLEPNDVLFIDEIHRLS 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++EEILYPAMED++LD+M+GEGPSARSVK+ L  FTLI ATTR G+LTNPL+DRFGI  
Sbjct: 121 PVIEEILYPAMEDYRLDIMIGEGPSARSVKLELPPFTLIGATTRAGMLTNPLRDRFGIVA 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           RL FY   +L  IV+R A L  +++  + A EIA RSRGTPRI  RLLRRVRDFAEV   
Sbjct: 181 RLEFYNERELSKIVERSAGLLEVSIDQDGAKEIAKRSRGTPRIVNRLLRRVRDFAEVKAQ 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             + + +AD AL  L +D +G D +D   L  I   F GGPVG++ +++ + E ++ IED
Sbjct: 241 GKVNKLVADQALKMLDVDVVGLDLMDRSLLEAIIIKFAGGPVGLDNLASAIGEEKETIED 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           +IEPY+IQQG++ RTPRGR+   +A +HLG+   ++
Sbjct: 301 VIEPYLIQQGYLMRTPRGRVATAMAHRHLGLPEQNK 336


>gi|86139154|ref|ZP_01057724.1| Holliday junction DNA helicase RuvB [Roseobacter sp. MED193]
 gi|85823998|gb|EAQ44203.1| Holliday junction DNA helicase RuvB [Roseobacter sp. MED193]
          Length = 343

 Score =  371 bits (953), Expect = e-101,   Method: Composition-based stats.
 Identities = 215/336 (63%), Positives = 260/336 (77%), Gaps = 3/336 (0%)

Query: 1   MMDREGLLSRNVSQEDAD---ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M+D +  L  +   EDA       LRP+ + EF GQ EA +NL++FIE+A+ R EA+DH 
Sbjct: 1   MIDADPTLRPDPIPEDASGEGDRALRPQGISEFIGQAEARANLRIFIESARRRGEAMDHT 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           LF GPPGLGKTTLAQ+VARELGVNFR TSGPV+AKAGDLAA+LTNLE RDVLFIDEIHRL
Sbjct: 61  LFHGPPGLGKTTLAQIVARELGVNFRMTSGPVLAKAGDLAAILTNLEARDVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           + +VEEILYPA+EDF+LDL++GEGP+AR+V+I L  FTL+ ATTR+GLLT PL+DRFGIP
Sbjct: 121 NPVVEEILYPALEDFELDLVIGEGPAARTVRIELQPFTLVGATTRMGLLTTPLRDRFGIP 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            RL FY +++L  IV R A+  G     E A EIA R+RGTPRIAGRLLRRV DFA V  
Sbjct: 181 TRLQFYTVDELFEIVSRNARKLGTPADAEGAREIARRARGTPRIAGRLLRRVVDFAVVEG 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
              ITR++AD AL RL +D++G D  D RYL +IA N+ GGPVGIET+SA LSE RD++E
Sbjct: 241 DGRITRDLADGALTRLGVDRLGLDGADRRYLRLIAENYSGGPVGIETLSAALSESRDSLE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           D+IEPY++QQG IQRTPRGR+L   AW HLGI  P 
Sbjct: 301 DVIEPYLLQQGLIQRTPRGRMLAQKAWTHLGIAPPQ 336


>gi|71909669|ref|YP_287256.1| Holliday junction DNA helicase B [Dechloromonas aromatica RCB]
 gi|97190011|sp|Q478E5|RUVB_DECAR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|71849290|gb|AAZ48786.1| Holliday junction DNA helicase subunit RuvB [Dechloromonas
           aromatica RCB]
          Length = 358

 Score =  371 bits (952), Expect = e-101,   Method: Composition-based stats.
 Identities = 195/320 (60%), Positives = 247/320 (77%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           +QE+A    LRP+ L ++TGQV+    L++FI+AA+ R+E+LDHVL  GPPGLGKTTLA 
Sbjct: 27  AQEEALERALRPKRLADYTGQVKIREQLEIFIQAARNRSESLDHVLLFGPPGLGKTTLAH 86

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           +VA E+GVN R TSGPV+ +AGDLAA+LTNLE  DVLFIDEIHRLS +VEEILYPA+EDF
Sbjct: 87  IVAAEMGVNLRQTSGPVLERAGDLAAILTNLEPHDVLFIDEIHRLSPVVEEILYPALEDF 146

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           Q+D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY  E+LK+IV
Sbjct: 147 QIDIMIGEGPAARSVKLDLPPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTAEELKSIV 206

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R A L    +  E + EIA RSRGTPRIA RLLRRVRD+AEV     ITR++ADAAL  
Sbjct: 207 SRSASLLNAPIDPEGSFEIAKRSRGTPRIANRLLRRVRDYAEVKADGNITRQVADAALHM 266

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D  G D +D + L+ I   FGGGPVG++ I+A + E RD IED++EPY+IQQG++QR
Sbjct: 267 LDVDPAGLDIMDRKLLSAIIDKFGGGPVGVDNIAAAIGEARDTIEDVLEPYLIQQGYLQR 326

Query: 313 TPRGRLLMPIAWQHLGIDIP 332
           T RGR+  P  ++HLG+  P
Sbjct: 327 TLRGRIATPAIYRHLGLAEP 346


>gi|262375569|ref|ZP_06068802.1| Holliday junction DNA helicase RuvB [Acinetobacter lwoffii SH145]
 gi|262309823|gb|EEY90953.1| Holliday junction DNA helicase RuvB [Acinetobacter lwoffii SH145]
          Length = 335

 Score =  371 bits (952), Expect = e-101,   Method: Composition-based stats.
 Identities = 184/330 (55%), Positives = 244/330 (73%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           ++ L+S +   ED     +RP +L+++ GQ      +++FI AA+ R EALDH L  GPP
Sbjct: 2   QDRLISGSEKPEDHFDRAIRPTSLDDYIGQPVVREQMEIFIGAARGREEALDHTLIFGPP 61

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++ARE+G N +STSGPV+ +AGDLAA+LTNLE+ DVLFIDEIHRLS ++EE
Sbjct: 62  GLGKTTLANIIAREMGGNLKSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPVIEE 121

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILYPAMED+QLD+M+GEGP+ARS+K++L  FTL+AATTR GLLT+PL+DRFGI  RL FY
Sbjct: 122 ILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRLEFY 181

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            +EDL  IV+R A L  + +T + A EIA RSRGTPRIA RLLRRVRD+A+V     I +
Sbjct: 182 SVEDLTHIVKRSANLMDVPMTGDGAKEIARRSRGTPRIANRLLRRVRDYAQVKGTGEINQ 241

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           ++A  AL  L +DK G D LD RYL+M+   F GGP G+E ++A ++E    +ED+IEPY
Sbjct: 242 DMAQRALDMLKVDKDGLDTLDRRYLSMLLERFDGGPAGVEALAAAMAEDSGTLEDVIEPY 301

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +IQQG++ RT RGR+   +A+   G+  P 
Sbjct: 302 LIQQGYVMRTARGRIATNMAYLQFGMTPPE 331


>gi|261418394|ref|YP_003252076.1| Holliday junction DNA helicase RuvB [Geobacillus sp. Y412MC61]
 gi|319767647|ref|YP_004133148.1| Holliday junction DNA helicase RuvB [Geobacillus sp. Y412MC52]
 gi|261374851|gb|ACX77594.1| Holliday junction DNA helicase RuvB [Geobacillus sp. Y412MC61]
 gi|317112513|gb|ADU95005.1| Holliday junction DNA helicase RuvB [Geobacillus sp. Y412MC52]
          Length = 333

 Score =  371 bits (952), Expect = e-101,   Method: Composition-based stats.
 Identities = 178/332 (53%), Positives = 238/332 (71%), Gaps = 1/332 (0%)

Query: 4   REGLLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
            E L+S  V  +E      LRP+ L E+ GQ +   NLKVFIEAAK R E LDHVL  GP
Sbjct: 2   EERLVSGEVLGEETVLEPSLRPQYLHEYIGQDKIKENLKVFIEAAKLREETLDHVLLYGP 61

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++A E+GV  R+TSGP + + GDLAALLT+LE  DVLFIDEIHRL   VE
Sbjct: 62  PGLGKTTLAVIIANEMGVKLRATSGPALERPGDLAALLTSLEPGDVLFIDEIHRLPRAVE 121

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMED+ LD+ +G+GP AR+++++L  FTL+ ATTR G L+ PL+DRFG+  RL +
Sbjct: 122 EVLYPAMEDYCLDIAIGKGPDARTLRLDLPPFTLVGATTRAGALSAPLRDRFGVISRLEY 181

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y ++ L  I++R A +  + +  EAA E+A R+RGTPRIA RLLRRVRDFA+V     IT
Sbjct: 182 YHVDQLAQIIERAAAILQIGIEREAALELARRARGTPRIANRLLRRVRDFAQVRGEGGIT 241

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             +A  AL RL +D++G DQ+D + L+ +   F GGPVG+ET++A + E    IE++ EP
Sbjct: 242 LPLAVEALERLQVDRLGLDQIDHKLLSAMIEKFAGGPVGLETLAAVIGEEAQTIEEVYEP 301

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           Y++Q G +QRTPRGR++ P A+ HLG+++P R
Sbjct: 302 YLMQIGLLQRTPRGRVVTPAAYTHLGMEVPKR 333


>gi|218288864|ref|ZP_03493115.1| Holliday junction DNA helicase RuvB [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218240953|gb|EED08130.1| Holliday junction DNA helicase RuvB [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 332

 Score =  371 bits (952), Expect = e-101,   Method: Composition-based stats.
 Identities = 181/331 (54%), Positives = 244/331 (73%), Gaps = 1/331 (0%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD E L+S    +EDA +  +RPR L+++ GQ     NL++FI+AAK R E LDHVL  G
Sbjct: 1   MD-ERLISAEWMREDAQLDTIRPRFLDDYIGQRAVVENLRIFIQAAKERGEPLDHVLLYG 59

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKT+LA ++A ELGV  R TSGP I +AGDLAA+LTNL+  DV+FIDEIHRLS  V
Sbjct: 60  PPGLGKTSLAMIIANELGVQIRVTSGPAIERAGDLAAILTNLQPGDVMFIDEIHRLSPSV 119

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMEDF +D+++G+GPSARSV+++L  FTLI ATTR GLL++PL+DRFG+ + L+
Sbjct: 120 EEVLYPAMEDFAIDIVIGKGPSARSVRLDLPPFTLIGATTRAGLLSHPLRDRFGVMLHLD 179

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y + DL  IV+R A++  L++T++   EIA R+RGTPRIA RLL+RVRD A+VA    I
Sbjct: 180 YYPVRDLAEIVKRNARILQLSITEDGCAEIARRARGTPRIANRLLKRVRDIAQVAGWPEI 239

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
               A  AL +L +D +G D  D R L      FGGGPVG++T++A + E    +ED+ E
Sbjct: 240 DAARAAEALAQLHVDPLGLDATDKRILEAAMDKFGGGPVGLDTLAAAVGEEPSTLEDVYE 299

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           PY++Q GF++RTPRGR++MP A++HLG  +P
Sbjct: 300 PYLLQIGFLKRTPRGRVVMPSAYRHLGRVVP 330


>gi|114765390|ref|ZP_01444505.1| Holliday junction DNA helicase B [Pelagibaca bermudensis HTCC2601]
 gi|114542233|gb|EAU45263.1| Holliday junction DNA helicase B [Roseovarius sp. HTCC2601]
          Length = 341

 Score =  371 bits (952), Expect = e-101,   Method: Composition-based stats.
 Identities = 212/333 (63%), Positives = 259/333 (77%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D +  L      ED D   LRP+ L +F GQ EA +NL+VFI++A+ R+EA+DH LF 
Sbjct: 1   MTDPDPTLRPEPMPEDRD-RALRPQMLGDFVGQAEARANLRVFIQSARQRSEAMDHTLFH 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++ARELGVNFR TSGPV+AKAGDLAA+LTNLE  DVLFIDEIHRL+  
Sbjct: 60  GPPGLGKTTLAQIMARELGVNFRMTSGPVLAKAGDLAAILTNLERNDVLFIDEIHRLNAA 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMED++LDL++GEGP+AR+V+I L  FTL+ ATTR+GLLT PL+DRFGIP RL
Sbjct: 120 VEEVLYPAMEDYELDLVIGEGPAARTVRIELQPFTLVGATTRLGLLTTPLRDRFGIPTRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY +E+L +IV R A+  G+    + A EIA R+RGTPRIAGRLLRRV DFA V     
Sbjct: 180 QFYTVEELNSIVTRNAEKLGVRAEPDGAREIARRARGTPRIAGRLLRRVVDFAVVEGNGV 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +TRE+AD AL RL +D +G D  D RYL +IA ++GGGPVGIETI+A LSE RDAIE++I
Sbjct: 240 VTRELADGALTRLGVDGLGLDGADRRYLGLIAEHYGGGPVGIETIAAALSESRDAIEEVI 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY++QQG IQRTPRGR+L   AW HLG+  P 
Sbjct: 300 EPYLLQQGLIQRTPRGRMLAQRAWTHLGLAAPQ 332


>gi|83718669|ref|YP_441794.1| Holliday junction DNA helicase RuvB [Burkholderia thailandensis
           E264]
 gi|167580614|ref|ZP_02373488.1| Holliday junction DNA helicase B [Burkholderia thailandensis TXDOH]
 gi|167618720|ref|ZP_02387351.1| Holliday junction DNA helicase B [Burkholderia thailandensis Bt4]
 gi|257137960|ref|ZP_05586222.1| Holliday junction DNA helicase RuvB [Burkholderia thailandensis
           E264]
 gi|97189952|sp|Q2SZ55|RUVB_BURTA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|83652494|gb|ABC36557.1| Holliday junction DNA helicase RuvB [Burkholderia thailandensis
           E264]
          Length = 356

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 197/331 (59%), Positives = 246/331 (74%), Gaps = 2/331 (0%)

Query: 5   EGLL--SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           E ++  +   S E+A    LRPR L+E+ GQ +    L++FIEAAK RAEALDHVL  GP
Sbjct: 10  ERIIAATPASSHEEAFERALRPRQLDEYVGQEKVRDQLEIFIEAAKRRAEALDHVLLFGP 69

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++ARE+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VE
Sbjct: 70  PGLGKTTLAHIIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVE 129

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILYPA+ED+Q+D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL F
Sbjct: 130 EILYPALEDYQIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEF 189

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y+ E L  IV+R A L    +    A EIA RSRGTPRIA RLLRRVRD+AEV     IT
Sbjct: 190 YDAEQLSRIVRRSAALLNAQIDPAGALEIAKRSRGTPRIANRLLRRVRDYAEVKADGNIT 249

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             +ADAAL  L +D +GFD +D + L  I   F GGPVG++ ++A + E RD IED++EP
Sbjct: 250 AAVADAALAMLDVDPVGFDLMDRKLLEAILHKFDGGPVGVDNLAAAIGEERDTIEDVLEP 309

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           Y+IQQGF+QRTPRGR+   + ++H G+  P 
Sbjct: 310 YLIQQGFLQRTPRGRVATLLTYRHFGLATPD 340


>gi|237748981|ref|ZP_04579461.1| holliday junction DNA helicase B [Oxalobacter formigenes OXCC13]
 gi|229380343|gb|EEO30434.1| holliday junction DNA helicase B [Oxalobacter formigenes OXCC13]
          Length = 355

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 189/324 (58%), Positives = 239/324 (73%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           S     E+A    LRP+ L E+ GQ +    L++FI AAK R EALDH L  GPPGLGKT
Sbjct: 17  SPASPNEEAIERALRPKLLNEYVGQHKTREQLEIFIAAAKKRNEALDHTLLFGPPGLGKT 76

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           TLA ++ARE+GVN R TSGPV+ +AGDLAA+LTNLE  DVLFIDEIHR+S +VEEILYPA
Sbjct: 77  TLAHIIAREMGVNLRQTSGPVLERAGDLAAILTNLEANDVLFIDEIHRMSPVVEEILYPA 136

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +ED+Q+D+++GEGP+ARSVK++L  FTLI ATTR G+LTNPL+DRFG+  RL FY+I+DL
Sbjct: 137 LEDYQIDILIGEGPAARSVKLDLQPFTLIGATTRAGMLTNPLRDRFGVVARLEFYDIDDL 196

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             IV R A L    + +E A EIA R+RGTPRIA RLLRRVRD+AEV     IT ++ADA
Sbjct: 197 TRIVTRSAMLLKAPIVEEGAREIARRARGTPRIANRLLRRVRDYAEVKGTGKITHDMADA 256

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL  L +D +GFD +D + L  +   F GGPVGI  ++A + E  D IED++EPY+IQQG
Sbjct: 257 ALKMLDVDPVGFDLMDRKLLEAVLFKFSGGPVGIANLAAAIGEEVDTIEDVLEPYLIQQG 316

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIP 332
           ++QRTPRGR+     ++H GI  P
Sbjct: 317 YLQRTPRGRIATTATYRHFGIAAP 340


>gi|254521057|ref|ZP_05133112.1| Holliday junction DNA helicase RuvB [Stenotrophomonas sp. SKA14]
 gi|219718648|gb|EED37173.1| Holliday junction DNA helicase RuvB [Stenotrophomonas sp. SKA14]
          Length = 346

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 189/331 (57%), Positives = 243/331 (73%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D   + +    ++DA  + +RP+ L ++ GQV     ++++I+AAK R +ALDHVL  
Sbjct: 1   MTDDRIIGAGATREDDAADASIRPKRLADYLGQVPVREQMEIYIQAAKGRGDALDHVLIF 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTL+ V+A ELGV  R TSGPVI KAGDLAALLTNL+  DVLFIDEIHRLS +
Sbjct: 61  GPPGLGKTTLSHVIANELGVALRVTSGPVIEKAGDLAALLTNLQPHDVLFIDEIHRLSPV 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDFQ+D+M+GEGP+ARS+KI+L  FTLI ATTR GLLT PL+DRFGI  RL
Sbjct: 121 VEEVLYPAMEDFQIDIMIGEGPAARSIKIDLPPFTLIGATTRAGLLTAPLRDRFGIVQRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY +E+L  IV+R A + G+  T + A EIA R+RGTPRIA RLLRRVRD+A+V     
Sbjct: 181 EFYSVEELTRIVRRSASILGIDCTADGAGEIARRARGTPRIANRLLRRVRDYAQVKAGGH 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I   +A AA+  L +D  GFD+LD R L  +   F GGPVGIE+++A LSE R  +ED++
Sbjct: 241 IDEAVAQAAMQMLKVDPEGFDELDRRLLKTMVDYFDGGPVGIESLAAALSEERGTLEDVV 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           EPY+IQQGF+ RT RGR+    A++H+G+  
Sbjct: 301 EPYLIQQGFLVRTARGRMATHKAYRHMGLKP 331


>gi|254450147|ref|ZP_05063584.1| Holliday junction DNA helicase RuvB [Octadecabacter antarcticus
           238]
 gi|198264553|gb|EDY88823.1| Holliday junction DNA helicase RuvB [Octadecabacter antarcticus
           238]
          Length = 344

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 218/336 (64%), Positives = 256/336 (76%), Gaps = 3/336 (0%)

Query: 1   MMDREGLLSRNVSQEDAD---ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M + +  L      ED        LRP+ L EF GQ EA SNL VFIE+AK R EA+DH 
Sbjct: 1   MTEPDPSLEPERQSEDIPRENDRALRPQMLSEFVGQAEARSNLAVFIESAKMRGEAMDHT 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           LF GPPGLGKTTLAQ++ARELGV FR TSGPV+AKAGDLAA+LTNLE RDVLFIDEIHRL
Sbjct: 61  LFHGPPGLGKTTLAQIMARELGVGFRMTSGPVLAKAGDLAAILTNLEARDVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           +  VEE+LYPA+EDF+LDL++GEGP+AR+V+I L  FTLI ATTR+GLLT PL+DRFGIP
Sbjct: 121 NPAVEEVLYPALEDFELDLVIGEGPAARTVRIELQPFTLIGATTRMGLLTTPLRDRFGIP 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            RL FY IE+L  IV RGA+L G   T + A EIA R+RGTPRIAGRLLRRV DFA V  
Sbjct: 181 TRLEFYTIEELHKIVTRGARLMGAPATPDGAQEIAKRARGTPRIAGRLLRRVVDFAIVEG 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
             T+T  IAD+AL RL +D +G D  D RYL +IA N+ GGPVGIET+SA LSE RDA+E
Sbjct: 241 DGTVTHAIADSALTRLGVDHLGLDSADRRYLRLIAENYQGGPVGIETMSAALSESRDALE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           ++IEPY++QQG IQRTPRGR+L   AW HLG+  P 
Sbjct: 301 EVIEPYLLQQGLIQRTPRGRMLAQKAWTHLGMAAPK 336


>gi|158320754|ref|YP_001513261.1| Holliday junction DNA helicase B [Alkaliphilus oremlandii OhILAs]
 gi|167012665|sp|A8MHI3|RUVB_ALKOO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|158140953|gb|ABW19265.1| Holliday junction DNA helicase RuvB [Alkaliphilus oremlandii
           OhILAs]
          Length = 335

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 180/328 (54%), Positives = 237/328 (72%), Gaps = 1/328 (0%)

Query: 4   REGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
            + +LS  V  ED +I   LRP+ L ++ GQ +    +K+FIEAA  R EALDHVL  GP
Sbjct: 5   EDRILSNTVRNEDYEIEGGLRPKFLNDYIGQDKVKERMKIFIEAALHRNEALDHVLLYGP 64

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTL+ ++A E+ VN + TSGPVI +AGDLAA+LTNL + DVLFIDEIHR++  VE
Sbjct: 65  PGLGKTTLSNIIANEMNVNIKITSGPVIERAGDLAAILTNLSENDVLFIDEIHRINRTVE 124

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMED+ LD+++G+GPSARS++++L +FTLI ATTR GLLT PL+DRFG+  +L  
Sbjct: 125 EVLYPAMEDYALDIIIGKGPSARSIRLDLPKFTLIGATTRAGLLTGPLRDRFGVIAKLEL 184

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y+ E LK I++R A +  + + D  A EIA RSRGTPRIA RLL+RVRDFA+V     IT
Sbjct: 185 YDTEQLKEIIRRSAYILNVYIDDNGAKEIASRSRGTPRIANRLLKRVRDFAQVRGDGRIT 244

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            EIA  AL  L ID +G D  D + +  +  NFGGGPVG++T++A   E R+ IED+ EP
Sbjct: 245 LEIAQEALELLEIDLLGLDNTDKKMIETMIHNFGGGPVGLDTLAAATGEERNTIEDVYEP 304

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           Y++Q GFI RTPRGR+++  A+ H  I 
Sbjct: 305 YLLQIGFINRTPRGRIVLEKAYNHFNIP 332


>gi|103485828|ref|YP_615389.1| Holliday junction DNA helicase RuvB [Sphingopyxis alaskensis
           RB2256]
 gi|122985270|sp|Q1GWB6|RUVB_SPHAL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|98975905|gb|ABF52056.1| Holliday junction DNA helicase RuvB [Sphingopyxis alaskensis
           RB2256]
          Length = 338

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 226/332 (68%), Positives = 263/332 (79%), Gaps = 4/332 (1%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D   L +   + EDAD + LRP+TL EF GQ  A  NL++FIEAAKAR +ALDHVLF 
Sbjct: 1   MTD---LTTPIRTPEDAD-AALRPKTLAEFVGQAAARENLRIFIEAAKARGDALDHVLFF 56

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ+VARELGV FRSTSGPVIAKAGDLAALLTNLED DVLFIDEIHRLS  
Sbjct: 57  GPPGLGKTTLAQIVARELGVGFRSTSGPVIAKAGDLAALLTNLEDGDVLFIDEIHRLSPA 116

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILYPAMED  LD+M+GEGPSARSV+I+L +FTL+ ATTR GLLT PL+DRFGIP+RL
Sbjct: 117 VEEILYPAMEDRALDIMIGEGPSARSVRIDLPQFTLVGATTRQGLLTTPLRDRFGIPVRL 176

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           NFY   +L+ ++ R A+L GLA+  + A EIA RSRGTPRIAGRLLRRVRDFA VA    
Sbjct: 177 NFYTHAELEQVIGRAARLLGLAIAPDGALEIAKRSRGTPRIAGRLLRRVRDFAAVAGHAI 236

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +    ADAAL RL +D +G D +D RYLTMIA  + GGPVG+ET++AGLSEPRD IED+I
Sbjct: 237 VDARAADAALNRLEVDALGLDAMDRRYLTMIADIYRGGPVGVETLAAGLSEPRDTIEDVI 296

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EPY++Q G I RT RGR L   AW+HLG++ P
Sbjct: 297 EPYLLQIGLIARTARGRTLNASAWKHLGLNPP 328


>gi|323702065|ref|ZP_08113733.1| Holliday junction DNA helicase RuvB [Desulfotomaculum nigrificans
           DSM 574]
 gi|323532947|gb|EGB22818.1| Holliday junction DNA helicase RuvB [Desulfotomaculum nigrificans
           DSM 574]
          Length = 344

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 182/327 (55%), Positives = 238/327 (72%), Gaps = 1/327 (0%)

Query: 5   EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E L+S     ED DI   LRP+ L+E+ GQ +A   + +F+EAA+ R EALDHVL  GPP
Sbjct: 3   ERLVSAVAQTEDNDIERSLRPKRLKEYIGQQKAKETIAIFVEAARQRGEALDHVLLFGPP 62

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTL+ ++A E+GVN R TSGP I + GDLAA+LTNL + D+LFIDEIHRLS  VEE
Sbjct: 63  GLGKTTLSNIIANEMGVNIRVTSGPAIERQGDLAAILTNLSEGDILFIDEIHRLSRAVEE 122

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILYPAMED+ LD+++G+GP ARS++++L +FTLI ATTR G+L +PL+DRFGI  RL FY
Sbjct: 123 ILYPAMEDYALDIVLGKGPGARSIRLDLPKFTLIGATTRAGMLASPLRDRFGIISRLEFY 182

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
             E+L  IV R A++  +++    A EIA RSRGTPR+A RLL+RVRD+A+V     IT 
Sbjct: 183 SAEELTEIVLRAARILNVSIEKSGAAEIARRSRGTPRVANRLLKRVRDYAQVKAQGEITA 242

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           E+A  AL    +D +G DQ D R L  I   F GGPVG++TI+A  SE  D +ED++EP+
Sbjct: 243 EVAAEALEFFEVDPLGMDQTDRRLLYTIIEKFNGGPVGLDTIAAATSEEPDTVEDVLEPF 302

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGID 330
           ++Q GFI RTPRGR++ P A++HLGI 
Sbjct: 303 LMQLGFIARTPRGRVVTPQAYRHLGIP 329


>gi|220920765|ref|YP_002496066.1| Holliday junction DNA helicase RuvB [Methylobacterium nodulans ORS
           2060]
 gi|219945371|gb|ACL55763.1| Holliday junction DNA helicase RuvB [Methylobacterium nodulans ORS
           2060]
          Length = 348

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 228/334 (68%), Positives = 278/334 (83%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M     LL+    ++D D S +RP +L +FTGQ  A +NL+VFIE+A+   +ALDHVLFV
Sbjct: 1   MSKPRALLTPERREDDIDAS-IRPLSLADFTGQRAARANLQVFIESARKTGQALDHVLFV 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ+VARELGVNFRSTSGPVIAKAGDLAA LTNLE+RDVLFIDEIHRL+  
Sbjct: 60  GPPGLGKTTLAQIVARELGVNFRSTSGPVIAKAGDLAAQLTNLEERDVLFIDEIHRLNPA 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILYPAMED+QLDL++GEGP+ARSVKI L +FTL+AATTR GLLT PL+DRFGIPIRL
Sbjct: 120 VEEILYPAMEDYQLDLIIGEGPAARSVKIELPKFTLVAATTRAGLLTTPLRDRFGIPIRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FYEI++L+ IV RGA++ G+ +  + A EIA R+RGTPRIAGRLLRRVRDFA V  A T
Sbjct: 180 EFYEIDELEAIVARGARVLGIGMAPDGANEIAKRARGTPRIAGRLLRRVRDFAIVEDAPT 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +TR IAD AL  L +D +G D +D +YL +IAR+FGGGPVG+ET++A LSEPRDAIE++I
Sbjct: 240 VTRAIADKALRLLDVDPVGLDTMDRKYLGLIARSFGGGPVGVETMAAALSEPRDAIEEII 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           EPY+IQ+GF+QRTPRGR+L P A++HLG+  P+R
Sbjct: 300 EPYLIQKGFVQRTPRGRVLTPHAFRHLGLPEPNR 333


>gi|254475746|ref|ZP_05089132.1| Holliday junction DNA helicase RuvB [Ruegeria sp. R11]
 gi|214029989|gb|EEB70824.1| Holliday junction DNA helicase RuvB [Ruegeria sp. R11]
          Length = 343

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 220/336 (65%), Positives = 263/336 (78%), Gaps = 3/336 (0%)

Query: 1   MMDREGLLSRNVSQEDA---DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M+D +  L      ED+   +   LRP+ L EF GQ EA +NL+VFIE+A+ R EA+DH 
Sbjct: 1   MIDADPTLRPAPLPEDSAAENDRALRPQGLGEFIGQAEARANLRVFIESARRRGEAMDHT 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           LF GPPGLGKTTLAQ+VARELGVNFR TSGPV+AKAGDLAA+LTNLE RDVLFIDEIHRL
Sbjct: 61  LFHGPPGLGKTTLAQIVARELGVNFRMTSGPVLAKAGDLAAILTNLEARDVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           +  VEE+LYPAMEDF+LDL++GEGP+AR+V+I L  FTL+ ATTR+GLLT PL+DRFGIP
Sbjct: 121 NPAVEEVLYPAMEDFELDLVIGEGPAARTVRIELQPFTLVGATTRMGLLTTPLRDRFGIP 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            RL FY I++L  IV R A+  G    D+ A EIA R+RGTPRIAGRLLRRV DFA V  
Sbjct: 181 TRLQFYTIDELFEIVSRNARKLGAPADDDGAREIARRARGTPRIAGRLLRRVVDFAVVEG 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
             TITR++AD AL RL +D++G D  D RYL MIA N+GGGPVGIET+SA LSE RDA+E
Sbjct: 241 DGTITRDLADGALTRLGVDQLGLDGADRRYLRMIAENYGGGPVGIETMSAALSESRDALE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           ++IEPY++QQG IQRTPRGR+L   AW+HLGI  P 
Sbjct: 301 EVIEPYLLQQGLIQRTPRGRMLAHKAWEHLGIRPPR 336


>gi|190575567|ref|YP_001973412.1| Holliday junction DNA helicase RuvB [Stenotrophomonas maltophilia
           K279a]
 gi|229484900|sp|B2FRN4|RUVB_STRMK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|190013489|emb|CAQ47124.1| putative Holliday junction DNA helicase [Stenotrophomonas
           maltophilia K279a]
          Length = 346

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 189/331 (57%), Positives = 243/331 (73%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D   + +    ++DA  + +RP+ L ++ GQV     ++++I+AAK R +ALDHVL  
Sbjct: 1   MTDDRIIGAGATREDDAADASIRPKRLADYLGQVPVREQMEIYIQAAKGRGDALDHVLIF 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTL+ V+A ELGV  R TSGPVI KAGDLAALLTNL+  DVLFIDEIHRLS +
Sbjct: 61  GPPGLGKTTLSHVIANELGVALRVTSGPVIEKAGDLAALLTNLQPHDVLFIDEIHRLSPV 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDFQ+D+M+GEGP+ARS+KI+L  FTLI ATTR GLLT PL+DRFGI  RL
Sbjct: 121 VEEVLYPAMEDFQIDIMIGEGPAARSIKIDLPPFTLIGATTRAGLLTAPLRDRFGIVQRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY +E+L  IV+R A + G+  T + A EIA R+RGTPRIA RLLRRVRD+A+V     
Sbjct: 181 EFYSVEELTRIVRRSASILGIDCTADGAGEIARRARGTPRIANRLLRRVRDYAQVKAGGH 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I   +A AA+  L +D  GFD+LD R L  +   F GGPVGIE+++A LSE R  +ED++
Sbjct: 241 IDEPVAQAAMKMLKVDPEGFDELDRRLLKTMVDYFDGGPVGIESLAAALSEERGTLEDVV 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           EPY+IQQGF+ RT RGR+    A++H+G+  
Sbjct: 301 EPYLIQQGFLVRTARGRMATHKAYRHMGLKP 331


>gi|283796453|ref|ZP_06345606.1| holliday junction DNA helicase RuvB [Clostridium sp. M62/1]
 gi|291075861|gb|EFE13225.1| holliday junction DNA helicase RuvB [Clostridium sp. M62/1]
          Length = 340

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 172/327 (52%), Positives = 233/327 (71%), Gaps = 1/327 (0%)

Query: 5   EGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
             +++ +V++ED  I   LRP+ L E+ GQ    S LK+FI+AAK+R E LDHVLF GPP
Sbjct: 12  RRIITTDVTEEDKKIETSLRPQLLSEYIGQERIKSTLKIFIDAAKSRKEPLDHVLFYGPP 71

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTL  ++A E+GVN + TSGP I K G++AA+L  L + DVLF+DEIHRL+  VEE
Sbjct: 72  GLGKTTLCGIIANEMGVNMKVTSGPAIEKPGEIAAILNGLSEGDVLFVDEIHRLNRQVEE 131

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LYPAMED+ +D+M+G+  SARS+++ L +FTL+ ATTR GLLT PL+DRFGI  +++FY
Sbjct: 132 VLYPAMEDYAIDIMLGKDSSARSIRLELPKFTLVGATTRAGLLTAPLRDRFGIIQKMDFY 191

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
              +LKTIV R A +  + + +E A EIA RSRGTPR+A RLL+RVRDFA+V +   IT+
Sbjct: 192 TPAELKTIVMRSADVMQVKIEEEGAFEIARRSRGTPRLANRLLKRVRDFAQVKYDGVITK 251

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
            +AD AL  L +DK+G D  D   L  + + F GGPVG+ET++A L E    +ED+ EPY
Sbjct: 252 AVADFALDILDVDKLGLDNNDRAILNAMIQKFSGGPVGLETLAACLGEDAGTLEDVYEPY 311

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGID 330
           ++  G I RTPRGR+    A+ HLG+ 
Sbjct: 312 LLMNGLINRTPRGRVATEAAYHHLGLS 338


>gi|331002345|ref|ZP_08325863.1| Holliday junction ATP-dependent DNA helicase ruvB [Lachnospiraceae
           oral taxon 107 str. F0167]
 gi|330410161|gb|EGG89595.1| Holliday junction ATP-dependent DNA helicase ruvB [Lachnospiraceae
           oral taxon 107 str. F0167]
          Length = 332

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 170/329 (51%), Positives = 235/329 (71%), Gaps = 1/329 (0%)

Query: 4   REGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
            + ++S  +++ED  I   LRP+ L E+ GQ +  +NLK++I+AAK R E+LDHVLF GP
Sbjct: 2   EKRIISTEITKEDKQIEKSLRPQFLHEYIGQEKIRNNLKIYIDAAKLRRESLDHVLFYGP 61

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTL  ++A E+G N + TSGP I K GD+AA+L NL + DVLF+DEIHRL+  VE
Sbjct: 62  PGLGKTTLCNIIANEMGTNLKVTSGPAIEKPGDMAAILNNLNEGDVLFVDEIHRLNRQVE 121

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMEDF +D+++G+   ARS++++L +FTL+ ATTR GLLT PL+DRFG+  +L F
Sbjct: 122 EVLYPAMEDFAIDIVIGKDAGARSIRLDLPKFTLVGATTRAGLLTAPLRDRFGVVQKLEF 181

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  ++LK IV+R + + G+ + D  A EIA RSRGTPR+A RLL+RVRDFA+V +   I 
Sbjct: 182 YNTDELKEIVKRSSIVLGVEIDDSGAVEIARRSRGTPRLANRLLKRVRDFAQVKYNGIID 241

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           +++AD AL  L +DK+G D  D   L  I   FGGGPVG+ T+SA + E    +ED+ EP
Sbjct: 242 KKVADYALDTLDVDKLGLDNNDRIILLTIIEKFGGGPVGLNTLSAAIGEDAGTLEDVYEP 301

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           Y++  G I RTP GR+    A+ HLGI++
Sbjct: 302 YLLMNGLINRTPGGRVATENAYIHLGIEM 330


>gi|257784696|ref|YP_003179913.1| Holliday junction DNA helicase RuvB [Atopobium parvulum DSM 20469]
 gi|257473203|gb|ACV51322.1| Holliday junction DNA helicase RuvB [Atopobium parvulum DSM 20469]
          Length = 355

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 179/330 (54%), Positives = 242/330 (73%), Gaps = 1/330 (0%)

Query: 4   REGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
            + ++S  +  ED +    LRP+TL+E+ GQ    SNL+V IEAAK+R E LDHV+F GP
Sbjct: 24  SQRVVSSGLQAEDLEQDRNLRPKTLDEYLGQERVKSNLRVLIEAAKSRNEPLDHVIFSGP 83

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA V+A E+G    +TSGP I +AGDLAA+LTNLE+ D+LF+DEIHRL+  VE
Sbjct: 84  PGLGKTTLAGVLAGEMGSKLHTTSGPAIERAGDLAAILTNLEEGDILFVDEIHRLNHQVE 143

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILYPAMEDF LD+++G+GP+ARS+++++ RFTL+AATTR GLLT PL+DRFGI  RL++
Sbjct: 144 EILYPAMEDFFLDIVIGKGPAARSIRLDIPRFTLVAATTRTGLLTGPLRDRFGISYRLDY 203

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y + +L+TIV R A +  + V ++ A EIA RSRGTPR+A RLL+RVRD+A+V    TIT
Sbjct: 204 YTVSELQTIVMRSANILDVEVDEQGAAEIASRSRGTPRLANRLLKRVRDYAQVKAEGTIT 263

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            ++A  AL    ID++G D +D+R L  +   F G PVG+ TI++ +SE    +ED+ EP
Sbjct: 264 WQVASEALSFFEIDELGLDVMDVRVLRALCETFRGRPVGLTTIASAVSEDPSTLEDVYEP 323

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           Y++QQG I RTP+GR     A+ HL I +P
Sbjct: 324 YLLQQGLIIRTPQGRQATHAAFDHLRIPVP 353


>gi|85858587|ref|YP_460789.1| Holliday junction DNA helicase RuvB [Syntrophus aciditrophicus SB]
 gi|97190384|sp|Q2LRA8|RUVB_SYNAS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|85721678|gb|ABC76621.1| holliday junction DNA helicase [Syntrophus aciditrophicus SB]
          Length = 340

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 176/328 (53%), Positives = 239/328 (72%), Gaps = 1/328 (0%)

Query: 2   MDREGLLSRN-VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M R+ L+S   +  ++   + LRP +++E+ GQ +    L +F+EAA+ R EALDHVL  
Sbjct: 1   MKRDDLVSPECMDGDNVYETTLRPHSIKEYVGQKKIKKTLPIFVEAAQKRKEALDHVLLY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++ARE+G N + TSGPVI + GDLAA+LTNL+D D+LFIDEIHRL   
Sbjct: 61  GPPGLGKTTLALIIAREMGFNIKVTSGPVIERPGDLAAILTNLKDYDILFIDEIHRLPHS 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILYPAMEDF +D+++G+GPSARS+K+++ +FTL+ ATTR GLLT+PL+DRFGI  RL
Sbjct: 121 VEEILYPAMEDFYIDIVIGQGPSARSMKLDIPKFTLVGATTRAGLLTSPLRDRFGISFRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           ++Y +E+L  I+ R A +  + +    A EIA RSRGTPRIA RLL+RVRD+A+V     
Sbjct: 181 DYYAVEELTKIINRSASIMSIEIEHSGALEIAKRSRGTPRIANRLLKRVRDYAQVKGEGI 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I R +A  AL  L ID  GFDQ+D   L  I  N+GGGPVGI+T+ A + E +  IED+ 
Sbjct: 241 IKRAVAVHALEMLEIDDRGFDQMDRSILLSIIENYGGGPVGIDTLCATVGEEKTTIEDVY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
           EPY+I++G++Q+T RGR+    A++H G
Sbjct: 301 EPYLIKEGYLQKTARGRIATKKAYEHFG 328


>gi|258512077|ref|YP_003185511.1| Holliday junction DNA helicase RuvB [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478803|gb|ACV59122.1| Holliday junction DNA helicase RuvB [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 332

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 183/331 (55%), Positives = 245/331 (74%), Gaps = 1/331 (0%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD E L+S    +EDA +  +RPR L+++ GQ  A  NL++FI+AAK R E LDHVL  G
Sbjct: 1   MD-ERLISAEWMREDAQLDTIRPRFLDDYIGQRAAVENLRIFIQAAKERGEPLDHVLLYG 59

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKT+LA ++A ELGV  R TSGP I +AGDLAA+LTNL+  DVLFIDEIHRLS  V
Sbjct: 60  PPGLGKTSLAMIIANELGVQIRVTSGPAIERAGDLAAILTNLQPGDVLFIDEIHRLSPSV 119

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMEDF +D+++G+GPSARSV+++L  FTLI ATTR GLL++PL+DRFG+ + L+
Sbjct: 120 EEVLYPAMEDFAIDIVIGKGPSARSVRLDLPPFTLIGATTRAGLLSHPLRDRFGVMLHLD 179

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y + DL  IV+R A++  L++T++   EIA R+RGTPRIA RLL+RVRD A+VA    I
Sbjct: 180 YYPVRDLAEIVKRNARILQLSITEDGCAEIARRARGTPRIANRLLKRVRDIAQVAGWPEI 239

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
               A  AL +L +D +G D  D R L      FGGGPVG++T++A + E    +ED+ E
Sbjct: 240 DAARAAEALAQLHVDPLGLDATDKRILEAAMDKFGGGPVGLDTLAAAVGEEPSTLEDVYE 299

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           PY++Q GF++RTPRGR++MP A++HLG  +P
Sbjct: 300 PYLLQIGFLKRTPRGRVVMPSAYRHLGRAVP 330


>gi|315303292|ref|ZP_07873927.1| holliday junction DNA helicase RuvB [Listeria ivanovii FSL F6-596]
 gi|313628339|gb|EFR96837.1| holliday junction DNA helicase RuvB [Listeria ivanovii FSL F6-596]
          Length = 335

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 181/331 (54%), Positives = 235/331 (70%), Gaps = 1/331 (0%)

Query: 2   MDREGLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD   + S  V  E+ +  + LRP+TL ++ GQ +  +NL VFIEAA  R EALDHVL  
Sbjct: 1   MDERIISSETVDSEEVSFETSLRPQTLSQYIGQDKVKNNLTVFIEAATLRNEALDHVLLY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA V+A E+G   ++TSGP I + GDLA +LT+L+  DVLFIDEIHRLS  
Sbjct: 61  GPPGLGKTTLAMVIASEMGSQIKTTSGPAIERPGDLATILTSLDPGDVLFIDEIHRLSRA 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EE+LYPAMED+ LD+++G GP+ARSV+++L  FTLI ATTR GLL+ PL+DRFG+   L
Sbjct: 121 IEEVLYPAMEDYCLDIVIGTGPTARSVRLDLPPFTLIGATTRAGLLSAPLRDRFGVIDHL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  E L  IV R A +    + D  A EIA RSRGTPRIA RLL+RVRDFA+V    T
Sbjct: 181 EFYTEEQLTEIVLRTANILDTKIDDLGAREIARRSRGTPRIANRLLKRVRDFAQVRGNGT 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +T ++A  AL  L +D  G D +D + L  I ++F GGPVG++TI+A + E R+ IED+ 
Sbjct: 241 VTEKLAKEALTLLQVDPRGLDTIDQKLLHTIIQSFRGGPVGLDTIAASIGEERETIEDMQ 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           EPY++Q GF+QRTPRGR+   IA++HLGI  
Sbjct: 301 EPYLLQIGFLQRTPRGRIATEIAYKHLGISY 331


>gi|290893934|ref|ZP_06556910.1| ruvB protein [Listeria monocytogenes FSL J2-071]
 gi|290556472|gb|EFD90010.1| ruvB protein [Listeria monocytogenes FSL J2-071]
          Length = 335

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 182/331 (54%), Positives = 234/331 (70%), Gaps = 1/331 (0%)

Query: 2   MDREGLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD   + S  V  E+ +  + LRP+TL ++ GQ +  +NL VFIEAAK R EALDHVL  
Sbjct: 1   MDERIISSETVDAEEVSFETSLRPQTLSQYIGQDKVKNNLTVFIEAAKLRNEALDHVLLY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA V+A E+G   ++TSGP I + GDLA +LT+LE  DVLFIDEIHRLS  
Sbjct: 61  GPPGLGKTTLAMVIASEMGSQIKTTSGPAIERPGDLATILTSLEPGDVLFIDEIHRLSRA 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EEILYPAMED+ LD+++G GP+ARSV+++L  FTLI ATTR GLL+ PL+DRFG+   L
Sbjct: 121 IEEILYPAMEDYCLDIVIGTGPTARSVRLDLPPFTLIGATTRAGLLSAPLRDRFGVIDHL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  E L  IV R + +    + D  A EIA RSRGTPRIA RLL+RVRDFA+V    T
Sbjct: 181 EFYTEEQLTEIVLRTSNILDTKIDDLGAREIARRSRGTPRIANRLLKRVRDFAQVRGNGT 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +T ++A  AL  L +D  G D +D + L  I ++F GGPVG++TI+A + E R+ IED+ 
Sbjct: 241 VTEKLAKEALTLLQVDPRGLDTIDQKLLHTIIQSFRGGPVGLDTIAASIGEERETIEDMQ 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           EPY++Q GF+QRTPRGR+    A+ HLGI  
Sbjct: 301 EPYLLQIGFLQRTPRGRIATETAYNHLGISY 331


>gi|294675102|ref|YP_003575718.1| Holliday junction DNA helicase RuvB [Prevotella ruminicola 23]
 gi|294472981|gb|ADE82370.1| Holliday junction DNA helicase RuvB [Prevotella ruminicola 23]
          Length = 345

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 176/333 (52%), Positives = 235/333 (70%), Gaps = 2/333 (0%)

Query: 1   MMDREGLLSRN--VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           MMD +  +        E    + LRP +  +F+GQ +   NL+VF+EAAK R E LDH L
Sbjct: 1   MMDEDFDIREERFSQGEKDFENALRPLSFSDFSGQKKVVENLEVFVEAAKYRGEPLDHTL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTL+ ++A ELGV F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS
Sbjct: 61  LHGPPGLGKTTLSNIIANELGVGFKITSGPVLDKPGDLAGILTSLEKNDVLFIDEIHRLS 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            +VEE LY AMED+++D+M+ +GPSARS++I+L+ FTL+ ATTR GLLT PL+ RFGI +
Sbjct: 121 PVVEEYLYSAMEDYRIDIMIDKGPSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGINM 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
            L +YE E L+ I++R A + G+ +T++AA EIA RSRGTPRIA  LLRRVRDFA+V   
Sbjct: 181 HLEYYEPETLQAIIERSANILGVPITEDAALEIAGRSRGTPRIANALLRRVRDFAQVKGN 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
            TI  +I   AL  L IDK G D++D + L  I   F GGPVGI TI+  + E    +E+
Sbjct: 241 GTIDTKITRVALTALNIDKYGLDEIDNKILLTIIDKFRGGPVGITTIATAIGEDAGTVEE 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           + EP++I +GFI+RTPRGR++  +A++H G + 
Sbjct: 301 VYEPFLIMEGFIKRTPRGRMVTELAYKHFGRNP 333


>gi|78485239|ref|YP_391164.1| Holliday junction DNA helicase B [Thiomicrospira crunogena XCL-2]
 gi|97190410|sp|Q31H83|RUVB_THICR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|78363525|gb|ABB41490.1| Holliday junction DNA helicase RuvB [Thiomicrospira crunogena
           XCL-2]
          Length = 340

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 186/335 (55%), Positives = 245/335 (73%), Gaps = 1/335 (0%)

Query: 1   MMDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + ++     +ED  +   +RP+ + ++ GQ      L++ I AAK R E LDHVL 
Sbjct: 1   MIETDRIVGGQSLEEDMYVQPTVRPQIITDYIGQQAVREQLQLSINAAKMRQEHLDHVLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTL+ ++A+E+GV  R TSGPVI K GDLAA+LT LE  DVLF+DEIHRLS 
Sbjct: 61  YGPPGLGKTTLSNIIAQEMGVTLRQTSGPVIEKPGDLAAILTRLEPHDVLFVDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           IVEE+LYPAMEDFQ+D+++GEGP+A+SVKI++  FTL+ ATTR GLLT+PL+DRFGI  R
Sbjct: 121 IVEEVLYPAMEDFQIDIIIGEGPAAQSVKIDIPPFTLVGATTRAGLLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY IE+L  IV R A + GL+   + A EIA RSRGTPRIA RLLRRVRD+A+V    
Sbjct: 181 LEFYSIEELAQIVTRSANILGLSAEPDGALEIARRSRGTPRIANRLLRRVRDYAQVKGNG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT EIAD AL  L +D +G D++D R L ++ + F   PVGI++ISA L E R  IED+
Sbjct: 241 VITAEIADLALNLLEVDPLGLDKMDRRLLELLIQKFESRPVGIDSISAALGEERGTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           IEP+++QQGF+ RTPRGR++   A++HLG+ +P R
Sbjct: 301 IEPFLVQQGFLIRTPRGRVVTQTAYRHLGLTMPER 335


>gi|49476146|ref|YP_034187.1| Holliday junction DNA helicase B [Bartonella henselae str.
           Houston-1]
 gi|68715467|sp|Q6G5R1|RUVB_BARHE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|49238954|emb|CAF28252.1| Holliday junction DNA helicase ruvB [Bartonella henselae str.
           Houston-1]
          Length = 361

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 232/330 (70%), Positives = 275/330 (83%), Gaps = 1/330 (0%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           + + LL       D D   LRP+ L++F GQ  A +NLK+FIEAAKAR EALDHVLFVGP
Sbjct: 5   EDQRLLGAVPLPNDPD-RSLRPQVLDDFIGQEAARANLKIFIEAAKARQEALDHVLFVGP 63

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTL+Q++A+ELGVNFRSTSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRLS  +E
Sbjct: 64  PGLGKTTLSQIMAKELGVNFRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSPAIE 123

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILYPAMED+QLDL++GEGP+ARSVKI+L++FTL+AATTR+GLLT PL+DRFGIPIRLNF
Sbjct: 124 EILYPAMEDYQLDLIIGEGPAARSVKIDLAKFTLVAATTRLGLLTTPLRDRFGIPIRLNF 183

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y IE+L+ IVQR A+L  + ++++ A EIA R+RGTPRIAGRLLRRV DFA V  AK I 
Sbjct: 184 YTIEELEYIVQRNARLFSVQISEDGAHEIARRARGTPRIAGRLLRRVCDFALVKRAKKID 243

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           R+IAD AL RL +D +G D LD RYL +IA+ F GGPVGIETI+A LSEPRDAIED+IEP
Sbjct: 244 RKIADEALSRLEVDHLGLDPLDRRYLLLIAQTFLGGPVGIETIAAALSEPRDAIEDIIEP 303

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           Y++QQGFIQRT RGR+L   AW HLG+  P
Sbjct: 304 YLLQQGFIQRTARGRILHQKAWSHLGLCAP 333


>gi|258593141|emb|CBE69452.1| Holliday junction DNA helicase ruvB [NC10 bacterium 'Dutch
           sediment']
          Length = 351

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 182/330 (55%), Positives = 243/330 (73%), Gaps = 1/330 (0%)

Query: 4   REGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           RE + +R +  ED ++   LRP+  +++ GQ +  +NL+VF+  AKAR E LDH+LF GP
Sbjct: 12  RERVANRQLQDEDQELEQSLRPKAWDDYIGQEKVKANLQVFVRGAKARREPLDHLLFYGP 71

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKT+LA ++A E+GVN R TSGPVI +  DLAA+L+NL ++DVLFIDEIHRL+ +VE
Sbjct: 72  PGLGKTSLAFMIASEMGVNIRVTSGPVIERQKDLAAILSNLREQDVLFIDEIHRLNPLVE 131

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E LYPAMED++LDL++G+GPSA+S ++ L RFTLI ATTR GLL +PL +RFG+  RL+F
Sbjct: 132 ETLYPAMEDYRLDLIIGQGPSAQSYRLKLPRFTLIGATTRAGLLASPLLNRFGVVQRLDF 191

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y   DL  IV R A++ G+++ +  A EIA RSRGTPRI  RLLRRVRDFA+V     IT
Sbjct: 192 YNDADLFRIVLRSAQILGVSIMENGAWEIARRSRGTPRIVNRLLRRVRDFAQVLGDGVIT 251

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           RE+A +AL RL +D  GFD++D R L  I   F GGPVGIET++  + E +D IED+ EP
Sbjct: 252 REVAQSALERLEVDTNGFDEMDRRILHTIIEKFAGGPVGIETLAVAVGEEKDTIEDVYEP 311

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++IQQGF+ RTPRGR +  +A+ H  +  P
Sbjct: 312 FLIQQGFLARTPRGRTVTRLAFDHFKLPRP 341


>gi|139438978|ref|ZP_01772438.1| Hypothetical protein COLAER_01444 [Collinsella aerofaciens ATCC
           25986]
 gi|133775689|gb|EBA39509.1| Hypothetical protein COLAER_01444 [Collinsella aerofaciens ATCC
           25986]
          Length = 355

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 167/332 (50%), Positives = 236/332 (71%), Gaps = 1/332 (0%)

Query: 1   MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M   E ++   ++ ED D+   LRP+ L+++ GQ     +L+V IEAA++R E LDHV+F
Sbjct: 22  MAHGERMVGSELTPEDLDVDRTLRPQRLDDYCGQEHIKQSLRVLIEAAQSRGETLDHVIF 81

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA V+A ELG   ++TSGP IA+ GDLAA+LTNL+  DVLFIDEIHRL+ 
Sbjct: 82  SGPPGLGKTTLATVIANELGAQIKTTSGPAIARTGDLAAILTNLQPGDVLFIDEIHRLNR 141

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEE+LYPAMEDF LD+++G+GP+ARS+++++ +FTL+AATTR G+LT PL+DRFGI  R
Sbjct: 142 SVEEVLYPAMEDFALDIVIGKGPAARSIRLDIPKFTLVAATTRSGMLTGPLRDRFGISYR 201

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L++Y +E+L  IV R A + G+ +   +A EI  RSRGTPR+A RLL+RVRD+A+V    
Sbjct: 202 LDYYTVEELAQIVTRSATILGVTIDHPSALEIGSRSRGTPRLANRLLKRVRDYAQVRGNG 261

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  +I   AL    ID++G D +D+R L  +A+ F G  VG+ T+++ + E    +ED+
Sbjct: 262 PIELDICRQALEFFEIDELGLDWMDIRILETLAKTFSGRAVGLTTLASAVGEDPGTLEDV 321

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
            EPY++Q G + RTP+GR      ++HLGI+ 
Sbjct: 322 YEPYLLQCGLMIRTPQGRQATLRTFEHLGIEP 353


>gi|134299519|ref|YP_001113015.1| Holliday junction DNA helicase RuvB [Desulfotomaculum reducens
           MI-1]
 gi|172044285|sp|A4J537|RUVB_DESRM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|134052219|gb|ABO50190.1| Holliday junction DNA helicase subunit RuvB [Desulfotomaculum
           reducens MI-1]
          Length = 344

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 180/329 (54%), Positives = 235/329 (71%), Gaps = 1/329 (0%)

Query: 4   REGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
            + L+S     ED D+ L LRPR L E+ GQ +A   + +F+EAA+ R E LDHVL  GP
Sbjct: 2   SDRLISATAQSEDNDLELSLRPRRLSEYIGQQKAKETISIFVEAARQRGEPLDHVLLFGP 61

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTL+ ++A E+ VN R+TSGP I + GDLAA+LTNL   DVLFIDEIHRLS  VE
Sbjct: 62  PGLGKTTLSNIIANEMAVNIRTTSGPAIERQGDLAAILTNLAPGDVLFIDEIHRLSKAVE 121

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILYPAMEDF LD+++G+GP ARS++++L +FTLI ATTR G+L +PL+DRFGI  RL F
Sbjct: 122 EILYPAMEDFALDIVLGKGPGARSIRLDLPKFTLIGATTRAGMLASPLRDRFGIISRLEF 181

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  EDL  IV R A +  + +    A EIA RSRGTPR+A RLL+RVRD+A+V     IT
Sbjct: 182 YNNEDLTRIVTRAADILKVVIDRSGAEEIARRSRGTPRVANRLLKRVRDYAQVRAQGDIT 241

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            ++A  AL    +D +G D  D R L+ I   F GGPVG++TI+A +SE  D +ED++EP
Sbjct: 242 ADVAAEALEFFEVDPLGLDHTDRRLLSSIIEKFNGGPVGLDTIAAAISEETDTVEDVLEP 301

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           +++Q G I RTPRGR++ P A++HLGI +
Sbjct: 302 FLMQMGLITRTPRGRVVTPQAYKHLGIPM 330


>gi|288555343|ref|YP_003427278.1| Holliday junction DNA helicase RuvB [Bacillus pseudofirmus OF4]
 gi|288546503|gb|ADC50386.1| Holliday junction DNA helicase RuvB [Bacillus pseudofirmus OF4]
          Length = 333

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 180/332 (54%), Positives = 240/332 (72%), Gaps = 1/332 (0%)

Query: 4   REGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
            E ++S      ED+    +RP  L ++ GQ +   NLK+FIEAAK R E LDHVL  GP
Sbjct: 2   EERMISAEAQGLEDSIDQSIRPMDLNQYIGQEKVKQNLKIFIEAAKMREECLDHVLLYGP 61

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTL+ ++A E+GV  R+TSGP I + GDLAA+LT LE  DVLFIDEIHRL+ +VE
Sbjct: 62  PGLGKTTLSGIIASEMGVEMRTTSGPAIERPGDLAAILTALEPGDVLFIDEIHRLNRMVE 121

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMEDF LD+++G+GP+ARSV+++L  FTL+ ATTR G+L+ PL+DRFG+  RL +
Sbjct: 122 EVLYPAMEDFCLDIVIGKGPTARSVRLDLPPFTLVGATTRAGMLSAPLRDRFGVMARLEY 181

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y   +L  IV+R A +    + DEAA EIA RSRGTPRIA RLLRRVRDFA+V    TI 
Sbjct: 182 YTEAELAFIVKRTASIFETELDDEAALEIARRSRGTPRIANRLLRRVRDFAQVKGDGTIP 241

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            ++A+ AL +L +D++G D +D + L  +   F GGPVG+ETISA + E  + IED+ EP
Sbjct: 242 VDLAEDALEKLQVDRLGLDHIDHKLLIGMIEKFRGGPVGLETISATIGEESETIEDVYEP 301

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           Y++Q GF+QRTPRGR++ P+ +QH  ++ P R
Sbjct: 302 YLLQIGFLQRTPRGRMVTPLCYQHFNLEEPSR 333


>gi|291288792|ref|YP_003505608.1| Holliday junction DNA helicase RuvB [Denitrovibrio acetiphilus DSM
           12809]
 gi|290885952|gb|ADD69652.1| Holliday junction DNA helicase RuvB [Denitrovibrio acetiphilus DSM
           12809]
          Length = 341

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 186/330 (56%), Positives = 248/330 (75%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           + + + +   ED   S +RP+  +++ GQ +   NLKVF++AAK R EALDH LF GPPG
Sbjct: 2   DNIFTDDKQPEDFQNSSIRPQGFDDYVGQKKVKENLKVFVQAAKQRGEALDHCLFHGPPG 61

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLA +++ ELGVN  STSGPVI KAGDLAA+LTN+++ DVLFIDEIHRL   VEEI
Sbjct: 62  LGKTTLANIISHELGVNINSTSGPVIDKAGDLAAILTNIQEGDVLFIDEIHRLHSNVEEI 121

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPAMEDF+LD+++G+GP+AR+VKI+L  FTLI ATTR GLLT+PL+DRFG+ +RL FY+
Sbjct: 122 LYPAMEDFKLDILIGQGPAARTVKIDLPPFTLIGATTRAGLLTSPLRDRFGMIMRLEFYD 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +++LK I+ RGA +    + D AA EIA RSRGTPRIA R+LRRVRDFA++ +   IT +
Sbjct: 182 VDELKHILLRGAGILEADIEDAAAEEIAGRSRGTPRIAHRILRRVRDFADILNNGQITLD 241

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +A  +L RL ID  G D  D   L  I   + GGPVG++T++A +SE RD IED+IEPY+
Sbjct: 242 MARESLRRLEIDTEGLDASDRNLLLSIIEKYEGGPVGVDTLAATMSEERDTIEDVIEPYL 301

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           I +GF+++TPRGR+    A++HL + +P R
Sbjct: 302 IYRGFVKKTPRGRMATAHAYEHLKMAVPGR 331


>gi|194366896|ref|YP_002029506.1| Holliday junction DNA helicase RuvB [Stenotrophomonas maltophilia
           R551-3]
 gi|238693499|sp|B4ST32|RUVB_STRM5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|194349700|gb|ACF52823.1| Holliday junction DNA helicase RuvB [Stenotrophomonas maltophilia
           R551-3]
          Length = 346

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 188/331 (56%), Positives = 242/331 (73%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D   + +    ++DA  + +RP+ L ++ GQV     ++++I+AAK R +ALDHVL  
Sbjct: 1   MTDDRIIGAGATREDDAADASIRPKRLADYLGQVPVREQMEIYIQAAKGRGDALDHVLIF 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTL+ V+A ELGV  R TSGPVI KAGDLAALLTNL+  DVLFIDEIHRLS +
Sbjct: 61  GPPGLGKTTLSHVIANELGVALRVTSGPVIEKAGDLAALLTNLQPHDVLFIDEIHRLSPV 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDFQ+D+M+GEGP+ARS+KI+L  FTLI ATTR GLLT PL+DRFGI  RL
Sbjct: 121 VEEVLYPAMEDFQIDIMIGEGPAARSIKIDLPPFTLIGATTRAGLLTAPLRDRFGIVQRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY +E+L  IV+R A +  +  T + A EIA R+RGTPRIA RLLRRVRD+A+V     
Sbjct: 181 EFYSVEELTRIVRRSAAILAIDCTADGAGEIARRARGTPRIANRLLRRVRDYAQVKAGGH 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I   +A AA+  L +D  GFD+LD R L  +   F GGPVGIE+++A LSE R  +ED++
Sbjct: 241 IDEAVAQAAMKMLKVDPEGFDELDRRLLKTMVDYFDGGPVGIESLAAALSEERGTLEDVV 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           EPY+IQQGF+ RT RGR+    A++H+G+  
Sbjct: 301 EPYLIQQGFLVRTARGRMATHKAYRHMGLKP 331


>gi|56697947|ref|YP_168318.1| Holliday junction DNA helicase RuvB [Ruegeria pomeroyi DSS-3]
 gi|81819940|sp|Q5LNT8|RUVB_SILPO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|56679684|gb|AAV96350.1| Holliday junction DNA helicase RuvB [Ruegeria pomeroyi DSS-3]
          Length = 341

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 211/333 (63%), Positives = 260/333 (78%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D +  L  +   ED D   LRP+ L+EF GQ EA +NL++F+++A+ R EA+DH LF 
Sbjct: 1   MTDADPTLRPDPLPEDND-RALRPQALDEFIGQAEARANLRIFVQSARQRGEAMDHTLFH 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++ARELGVNFR TSGPV+AKAGDLAA+LTNLE RDVLFIDEIHRL+  
Sbjct: 60  GPPGLGKTTLAQIMARELGVNFRMTSGPVLAKAGDLAAILTNLEARDVLFIDEIHRLNPA 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDF+LDL++G+GP+AR+V+I L  FTL+ ATTR+GLLT PL+DRFGIP RL
Sbjct: 120 VEEVLYPAMEDFELDLVIGDGPAARTVRIELQPFTLVGATTRMGLLTTPLRDRFGIPTRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY +++L  IV R A+  G    +  A EIA R+RGTPRIAGRLLRRV DFA V     
Sbjct: 180 LFYTVDELFEIVSRNARKLGAPAEEAGAREIARRARGTPRIAGRLLRRVVDFAVVEGDGR 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           ITRE+AD AL RL +D++G D  D RYL +IA N+ GGPVGIET+SA LSE RD++E++I
Sbjct: 240 ITRELADHALTRLGVDQLGLDGADRRYLRLIAENYSGGPVGIETLSAALSESRDSLEEVI 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY++QQG IQRTPRGR+L   AW HLG+D P 
Sbjct: 300 EPYLLQQGLIQRTPRGRMLAQKAWTHLGLDAPR 332


>gi|254518552|ref|ZP_05130608.1| holliday junction DNA helicase RuvB [Clostridium sp. 7_2_43FAA]
 gi|226912301|gb|EEH97502.1| holliday junction DNA helicase RuvB [Clostridium sp. 7_2_43FAA]
          Length = 341

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 171/324 (52%), Positives = 231/324 (71%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           E +++     ED     LRP++L E+ GQ +    L +FI+AA+ R EALDHVL  GPPG
Sbjct: 2   ERIITPQEIFEDGSSLSLRPQSLNEYIGQDKVKERLNIFIKAAQNRDEALDHVLLYGPPG 61

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLA ++A+E+    + TSGP I +AGDLAA+LT L+D DVLFIDEIHRL+  VEEI
Sbjct: 62  LGKTTLANIIAKEMDGELKITSGPAIERAGDLAAILTTLKDNDVLFIDEIHRLNRNVEEI 121

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPAMED+ LD+++G+G +A+S++++L +FTLI ATTR+G+LT+PL+DRFG+   + +Y 
Sbjct: 122 LYPAMEDYVLDIVIGKGAAAKSIRLDLPKFTLIGATTRIGMLTSPLRDRFGVLCDMQYYT 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            E LK I+ R A +    +T+E A E+A RSRGTPRIA RLL+RVRD+A+V     I+ +
Sbjct: 182 EEQLKEIIVRSAFVLECNITEEGAYELARRSRGTPRIANRLLKRVRDYAQVYSDSLISYK 241

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
            A AAL  L +D  GFD++D + L  I  NF GGPVGIET+S  + E    IED+ EPY+
Sbjct: 242 EAKAALELLEVDSKGFDRVDNKILEAIIDNFNGGPVGIETLSYFIGEELGTIEDVYEPYL 301

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLG 328
           +Q GFI RT RGR+    A++HLG
Sbjct: 302 LQTGFIVRTSRGRVATDKAYEHLG 325


>gi|126725529|ref|ZP_01741371.1| Holliday junction DNA helicase B [Rhodobacterales bacterium
           HTCC2150]
 gi|126704733|gb|EBA03824.1| Holliday junction DNA helicase B [Rhodobacterales bacterium
           HTCC2150]
          Length = 346

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 211/328 (64%), Positives = 257/328 (78%), Gaps = 1/328 (0%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           +  L      ED+D   LRP+ L EF GQ EA +NL VFI++A+ R +A+DH LF GPPG
Sbjct: 9   DPALRPETLPEDSD-RALRPQQLGEFIGQEEARANLSVFIQSARQRGQAMDHTLFHGPPG 67

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLAQ++ARELGVNFR TSGPV+AKAGDLAA+LTNLE RDVLFIDEIHRL+  VEE+
Sbjct: 68  LGKTTLAQIMARELGVNFRMTSGPVLAKAGDLAAILTNLEKRDVLFIDEIHRLNPAVEEV 127

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPA+EDF+LDL++GEGP+AR+V+I L  FTL+ ATTR+GLLT PL+DRFGIP RL FY 
Sbjct: 128 LYPALEDFELDLVIGEGPAARTVRIELQPFTLVGATTRLGLLTTPLRDRFGIPTRLQFYT 187

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           + +L  IV RGA+L G+    + A EIA R+RGTPRIAGRLLRRV DFA V    T+TR+
Sbjct: 188 VPELHEIVTRGARLLGVPCDADGALEIAKRARGTPRIAGRLLRRVVDFALVEGDGTLTRK 247

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +AD AL RL +D +G D  D RYL M+A N+GGGPVGIET++A LSE RDA+E++IEPY+
Sbjct: 248 LADHALTRLGVDHLGLDGADRRYLMMMAENYGGGPVGIETLAAALSESRDALEEVIEPYL 307

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           +QQG IQRTPRGR L   AW HLG+  P
Sbjct: 308 LQQGLIQRTPRGRALGAKAWTHLGLSSP 335


>gi|301301361|ref|ZP_07207503.1| Holliday junction DNA helicase RuvB [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300214786|gb|ADJ79202.1| Holliday junction ATP-dependent DNA helicase ruvB [Lactobacillus
           salivarius CECT 5713]
 gi|300851021|gb|EFK78763.1| Holliday junction DNA helicase RuvB [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 336

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 173/332 (52%), Positives = 226/332 (68%), Gaps = 1/332 (0%)

Query: 1   MMDREGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M D E ++S +  + ED +   LRP+T +++ GQ      + V+I+AAK R E+LDHVL 
Sbjct: 1   MYDEERIVSGDSFEGEDLNEQSLRPQTFDQYIGQKLLKDEISVYIQAAKQREESLDHVLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA V+A E+GV  ++T+GP I K GDL ALL  LE  DVLFIDEIHRL  
Sbjct: 61  YGPPGLGKTTLATVIANEMGVKIKTTTGPAIEKPGDLVALLNELEPGDVLFIDEIHRLPK 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEEILY AMED+ +D++VG+GP+A  V   L  FTL+ ATTR GLL+ PL+ RFGI   
Sbjct: 121 NVEEILYSAMEDYFIDIIVGQGPTAHPVHFPLPPFTLVGATTRAGLLSAPLRARFGIVGH 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           + +Y   DL  I++R A++    + DE A EIA RSRGTPR+A RLL+RVRDFAEV H  
Sbjct: 181 MEYYNEVDLSQIIKRSAQILSTGIDDEGAHEIARRSRGTPRVANRLLKRVRDFAEVKHKD 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  EI   AL  L +DK+G D+ D + L  +   + GGPVG+ TI+A + E  D I D+
Sbjct: 241 KIDTEIVQFALDLLRVDKVGLDRTDRKLLKAMIELYDGGPVGLNTIAANIGEESDTIADM 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           IEPY++Q GFI+RTPRGR++   A++HLGI  
Sbjct: 301 IEPYLMQIGFIKRTPRGRMVTLAAYEHLGIKY 332


>gi|312897340|ref|ZP_07756766.1| Holliday junction DNA helicase RuvB [Megasphaera micronuciformis
           F0359]
 gi|310621558|gb|EFQ05092.1| Holliday junction DNA helicase RuvB [Megasphaera micronuciformis
           F0359]
          Length = 340

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 190/332 (57%), Positives = 243/332 (73%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M+   ++       D+    LRP  L+E+ GQ +A  NL+VFI AAK R EALDHVL  G
Sbjct: 1   MEETRIVEMGDLPGDSWQYSLRPHYLKEYIGQEKAKRNLEVFIAAAKMRKEALDHVLLYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E GV FR TSGP I +AGDLAALLTNL++RDVLFIDEIHRLS  V
Sbjct: 61  PPGLGKTTLAGIIANEAGVGFRITSGPAIERAGDLAALLTNLQERDVLFIDEIHRLSHSV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMED+ LD+++G+GPSARSV+I+L  FTLI ATT+VG L +PL+DRFG+  RL 
Sbjct: 121 EEVLYAAMEDYALDIVIGKGPSARSVRIDLPPFTLIGATTQVGRLASPLRDRFGVISRLE 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY+ E+L  I++R A +  + +  + A EIA RSRGTPRIA RLL+RVRDFA+VA A  I
Sbjct: 181 FYKPEELVLIIERTADILDMRIERDGALEIAGRSRGTPRIANRLLKRVRDFAQVADAPAI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T+ IA  AL RL +D  G D+ D R LT I   F GGPVG++TI+A +SE  DA+ED+ E
Sbjct: 241 TKNIASEALNRLEVDACGLDRTDRRVLTAIIEKFDGGPVGLDTIAAAISESVDAVEDVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           P+++Q GF+ RTPRGR+    A++HLG+ +P 
Sbjct: 301 PFLMQLGFLNRTPRGRVATAAAYRHLGLAVPQ 332


>gi|85714393|ref|ZP_01045381.1| Holliday junction DNA helicase RuvB [Nitrobacter sp. Nb-311A]
 gi|85698840|gb|EAQ36709.1| Holliday junction DNA helicase RuvB [Nitrobacter sp. Nb-311A]
          Length = 349

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 225/334 (67%), Positives = 273/334 (81%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M     +++     +D   + LRP+ L EF GQ +A +NL++FI+AA+ R EALDHVLFV
Sbjct: 1   MTTPSRIVTPERRADDVGDTALRPQKLSEFVGQRQARANLQIFIDAARKRKEALDHVLFV 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ+VARELGV FR+TSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRLS  
Sbjct: 61  GPPGLGKTTLAQIVARELGVGFRATSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSPA 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDFQLDL++GEGP+ARSVKI L++FTL+ ATTR GLLTNPL+DRFGIP+RL
Sbjct: 121 VEEVLYPAMEDFQLDLIIGEGPAARSVKIELAKFTLVGATTRAGLLTNPLRDRFGIPVRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           NFY  ++L+ IV RGA++ G+ +T + A EIA R+RGTPRIAGRLLRRVRDFA  A A +
Sbjct: 181 NFYTEDELEKIVSRGARVLGVGMTADGANEIARRARGTPRIAGRLLRRVRDFASAADAAS 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I R+IAD AL  L +D  G D +D RYLT IA N+GGGPVG+ET++A LSEPRDAIED+I
Sbjct: 241 IDRKIADHALGALEVDAAGLDAMDRRYLTTIALNYGGGPVGVETMAAALSEPRDAIEDII 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           EPY+IQ G++QRTPRGRLL   A++HLG+  P R
Sbjct: 301 EPYLIQCGYLQRTPRGRLLTSHAFRHLGLAEPTR 334


>gi|154252564|ref|YP_001413388.1| Holliday junction DNA helicase RuvB [Parvibaculum lavamentivorans
           DS-1]
 gi|171769604|sp|A7HUZ8|RUVB_PARL1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|154156514|gb|ABS63731.1| Holliday junction DNA helicase RuvB [Parvibaculum lavamentivorans
           DS-1]
          Length = 352

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 222/328 (67%), Positives = 265/328 (80%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           + ++     +ED     LRP+ L +F GQ  A  NL VFIEAA+ RAEALDHVLF GPPG
Sbjct: 3   DRIVGAAKREEDELERSLRPQVLSDFVGQARARENLAVFIEAARTRAEALDHVLFAGPPG 62

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLAQ+VARELGVNFR+TSGPVI+KAGDLAALLTNLE RDVLFIDEIHRLS  VEEI
Sbjct: 63  LGKTTLAQIVARELGVNFRATSGPVISKAGDLAALLTNLEPRDVLFIDEIHRLSPAVEEI 122

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPAMEDFQLDL++GEGP ARSV+I L+ FTLI ATTR GLLT PL+DRFGIP+RL+FYE
Sbjct: 123 LYPAMEDFQLDLIIGEGPGARSVRIELAPFTLIGATTRTGLLTTPLRDRFGIPVRLHFYE 182

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           + +L+ IV+RGA + G+A+T + A EIA R+RGTPR+AGRLLRRVRDFA V   K+I  +
Sbjct: 183 VAELEGIVRRGASVLGVAMTPDGAHEIARRARGTPRVAGRLLRRVRDFASVEGVKSIDAK 242

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
            AD AL RL +D++G D LD RYL  IA +F GGPVG+ETI+A LSEPRDAIE++IEPY+
Sbjct: 243 AADKALQRLEVDELGLDALDHRYLRCIAVSFSGGPVGVETIAASLSEPRDAIEEIIEPYL 302

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           IQQG + RTPRGR L P A+ H+G+ +P
Sbjct: 303 IQQGLVNRTPRGRTLTPAAFAHIGVALP 330


>gi|251798376|ref|YP_003013107.1| Holliday junction DNA helicase RuvB [Paenibacillus sp. JDR-2]
 gi|247546002|gb|ACT03021.1| Holliday junction DNA helicase RuvB [Paenibacillus sp. JDR-2]
          Length = 333

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 187/332 (56%), Positives = 246/332 (74%), Gaps = 1/332 (0%)

Query: 4   REGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
            + ++S N+  ++  + L LRPR L E+ GQ +A  NLK++I+AAK R EALDHVL  GP
Sbjct: 2   EDRIISANLMMDEQAMELSLRPRYLAEYIGQSKAKENLKIYIDAAKMRKEALDHVLLYGP 61

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTL+ ++A ELGVN R+TSGP I + GDLAALLTNL++ DVLFIDEIHRL   VE
Sbjct: 62  PGLGKTTLSNIIANELGVNLRTTSGPAIERPGDLAALLTNLQEGDVLFIDEIHRLHRTVE 121

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMEDF LD+M+G+GPSARSV+++L  FTLI ATTR GLL+ PL+DRFG+  RL F
Sbjct: 122 EVLYPAMEDFALDIMIGKGPSARSVRLDLPPFTLIGATTRAGLLSAPLRDRFGVISRLEF 181

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y +++L  IV R A++  +A+  EA+ EIAMRSRGTPRIA RLL+RVRD+A+V     IT
Sbjct: 182 YTMDELAYIVSRSAEIFDIAIIGEASEEIAMRSRGTPRIANRLLKRVRDYAQVRGDGIIT 241

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            EIA +AL    +D +G D +D + L  +   F G PVG++TI+A + E    IED+ EP
Sbjct: 242 HEIAKSALELQQVDPVGLDSIDHKMLLAMMTTFAGRPVGLDTIAASIGEESQTIEDVYEP 301

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           Y++Q GF+QRTPRGR+    A++HLG+ +P R
Sbjct: 302 YLMQIGFLQRTPRGRIATDQAYRHLGMPVPER 333


>gi|116872961|ref|YP_849742.1| Holliday junction DNA helicase B [Listeria welshimeri serovar 6b
           str. SLCC5334]
 gi|123463789|sp|A0AIY1|RUVB_LISW6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|116741839|emb|CAK20963.1| holliday junction DNA helicase RuvB [Listeria welshimeri serovar 6b
           str. SLCC5334]
          Length = 335

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 182/331 (54%), Positives = 233/331 (70%), Gaps = 1/331 (0%)

Query: 2   MDREGLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD   + S  V  E+ +  + LRP+TL ++ GQ +  +NL VFIEAA  R EALDHVL  
Sbjct: 1   MDERIISSETVDAEEVSFETSLRPQTLSQYIGQDKVKNNLTVFIEAATLRNEALDHVLLY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA V+A E+G   ++TSGP I + GDLA +LT+LE  DVLFIDEIHRLS  
Sbjct: 61  GPPGLGKTTLAMVIASEMGSQIKTTSGPAIERPGDLATILTSLEPGDVLFIDEIHRLSRA 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EEILYPAMED+ LD+++G GP+ARSV+++L  FTLI ATTR GLL+ PL+DRFG+   L
Sbjct: 121 IEEILYPAMEDYCLDIVIGTGPTARSVRLDLPPFTLIGATTRAGLLSAPLRDRFGVIDHL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  E L  IV R A +    + D  A EIA RSRGTPRIA RLL+RVRDFA+V    T
Sbjct: 181 EFYTEEQLTEIVLRTAGILDTKIDDLGAREIARRSRGTPRIANRLLKRVRDFAQVRGNGT 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +T ++A  AL  L +D  G D +D + L  I ++F GGPVG++TI+A + E R+ IED+ 
Sbjct: 241 VTEKLAKEALTLLQVDPRGLDTIDQKLLHTIIQSFRGGPVGLDTIAASIGEERETIEDMQ 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           EPY++Q GF+QRTPRGR+    A+ HLGI  
Sbjct: 301 EPYLLQIGFLQRTPRGRIATETAYNHLGISY 331


>gi|312870459|ref|ZP_07730579.1| Holliday junction DNA helicase RuvB [Lactobacillus oris PB013-T2-3]
 gi|311094016|gb|EFQ52340.1| Holliday junction DNA helicase RuvB [Lactobacillus oris PB013-T2-3]
          Length = 340

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 171/335 (51%), Positives = 238/335 (71%), Gaps = 3/335 (0%)

Query: 1   MMDREGLLSRNVSQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M +++  +  + SQ++A+  +   LRP+ L+++ GQ +  + L+V+I+AAK R EALDHV
Sbjct: 1   MNEKQNDVLSDQSQDEAEEQIELTLRPQNLQDYIGQAQLKNKLRVYIKAAKEREEALDHV 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTLA V+A E+ VN ++TSGP I K GDL ALL  L+  DVLFIDEIHRL
Sbjct: 61  LLYGPPGLGKTTLAMVIAHEMAVNIKTTSGPAIEKPGDLVALLNELQPGDVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             +VEE+LY AMED+ +D++VGEGP+A  V   L  FTLI ATTR G+L+ PL+DRFGI 
Sbjct: 121 PKVVEEMLYSAMEDYYIDIVVGEGPTAHPVHFPLPPFTLIGATTRAGMLSAPLRDRFGIV 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
             +N+Y  ++LK I+ R A++    + ++ A E+A+RSRGTPRIA RLL+RVRDFA+VAH
Sbjct: 181 EHMNYYNQDELKQIIFRSARIFDTQIEEQGAHELALRSRGTPRIANRLLKRVRDFAQVAH 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
            + I   I   AL  L +D  G D++D + L  +   + GGPVG++TI+A + E  + IE
Sbjct: 241 RQAIDAAIVKQALDLLQVDSRGLDEIDRKMLLTMINFYQGGPVGLKTIAANIGEETNTIE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++ EPY+IQ G+I RTPRGR++ P A+ HLGI+ P
Sbjct: 301 EMYEPYLIQIGYISRTPRGRVVTPAAYDHLGINYP 335


>gi|92118981|ref|YP_578710.1| Holliday junction DNA helicase RuvB [Nitrobacter hamburgensis X14]
 gi|123083536|sp|Q1QHP7|RUVB_NITHX RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|91801875|gb|ABE64250.1| Holliday junction DNA helicase RuvB [Nitrobacter hamburgensis X14]
          Length = 347

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 225/334 (67%), Positives = 275/334 (82%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D   +++     +D   ++LRP+ L EF GQ +A +NL++FI+AA+ R EALDHVLFV
Sbjct: 1   MTDVPRMVTPERRSDDVGDTVLRPQRLAEFVGQAQARANLQIFIDAARKRKEALDHVLFV 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ+VARELGV FR+TSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRLS  
Sbjct: 61  GPPGLGKTTLAQIVARELGVGFRATSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSPA 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDFQLDL++GEGP+ARSVKI LS+FTL+ ATTR GLLTNPL+DRFGIP+RL
Sbjct: 121 VEEVLYPAMEDFQLDLIIGEGPAARSVKIELSKFTLVGATTRAGLLTNPLRDRFGIPVRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           NFY +++L+ IV RGA++  + +T + A EIA R+RGTPRIAGRLLRRVRDFA  A A +
Sbjct: 181 NFYTVDELEKIVSRGARVLDVGMTADGANEIARRARGTPRIAGRLLRRVRDFASAADAAS 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I R+IAD AL  L +D  G D +D RYLT IA N+GGGPVG+ET++A LSEPRDAIED+I
Sbjct: 241 INRKIADHALGALEVDAAGLDAMDRRYLTTIALNYGGGPVGVETMAAALSEPRDAIEDII 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           EP++IQ G++QRTPRGRLL   A++HLG+  P R
Sbjct: 301 EPFLIQCGYLQRTPRGRLLTSHAFRHLGLTEPSR 334


>gi|227891122|ref|ZP_04008927.1| Holliday junction DNA helicase B [Lactobacillus salivarius ATCC
           11741]
 gi|227866996|gb|EEJ74417.1| Holliday junction DNA helicase B [Lactobacillus salivarius ATCC
           11741]
          Length = 336

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 173/332 (52%), Positives = 226/332 (68%), Gaps = 1/332 (0%)

Query: 1   MMDREGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M D E ++S +  + ED +   LRP+T +++ GQ      + V+I+AAK R E+LDHVL 
Sbjct: 1   MYDEERIVSGDSFEGEDLNEQSLRPQTFDQYIGQKLLKDEISVYIQAAKQREESLDHVLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA V+A E+GV  ++T+GP I K GDL ALL  LE  DVLFIDEIHRL  
Sbjct: 61  YGPPGLGKTTLATVIANEMGVKIKTTTGPAIEKPGDLVALLNELEPGDVLFIDEIHRLPK 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEEILY AMED+ +D++VG+GP+A  V   L  FTL+ ATTR GLL+ PL+ RFGI   
Sbjct: 121 NVEEILYSAMEDYFIDIIVGQGPTAHPVHFPLPPFTLVGATTRAGLLSAPLRARFGIVGH 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           + +Y   DL  I++R A++    + DE A EIA RSRGTPR+A RLL+RVRDFAEV H  
Sbjct: 181 MEYYNEVDLSQIIKRSAQILSTGIDDEGAHEIARRSRGTPRVANRLLKRVRDFAEVKHKD 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  EI   AL  L +DK+G D+ D + L  +   + GGPVG+ TI+A + E  D I D+
Sbjct: 241 KIDTEIVQFALDLLRVDKVGLDRTDRKLLKAMIELYDGGPVGLNTIAANIGEESDTIADM 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           IEPY++Q GFI+RTPRGR++   A++HLGI  
Sbjct: 301 IEPYLMQIGFIKRTPRGRIVTLAAYEHLGIKY 332


>gi|20140283|sp|Q9KDI8|RUVB_BACHD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
          Length = 333

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 177/332 (53%), Positives = 247/332 (74%), Gaps = 1/332 (0%)

Query: 4   REGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
            E ++S     E+A +   +RP + E++ GQ +   NLKVFIEAAK R EALDHVL  GP
Sbjct: 2   EERMVSAEAQTEEAAVEQGIRPHSFEQYIGQEKVKQNLKVFIEAAKMREEALDHVLLYGP 61

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTL+ ++A ELGV  R+TSGP I + GDLAA+LT LE  DVLFIDEIHRL+ +VE
Sbjct: 62  PGLGKTTLSTIIANELGVQMRTTSGPAIERPGDLAAILTALEPGDVLFIDEIHRLNRMVE 121

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMED+ +D+++G+GP+ARSV+++L  FTL+ ATTR G+L++PL+DRFG+  RL +
Sbjct: 122 EVLYPAMEDYCIDIVIGKGPTARSVRLDLPPFTLVGATTRAGMLSSPLRDRFGVMARLEY 181

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y +E+L TI++R A +    +  +A+ EIA RSRGTPRIA RLLRRVRDFA+V+    I+
Sbjct: 182 YNVEELTTIIERTATIFDTELERDASIEIARRSRGTPRIANRLLRRVRDFAQVSGDMRIS 241

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
              A  +L RL +D++G D +D + +  I   F GGPVG+ETISA + E  D IE++ EP
Sbjct: 242 SSRAIESLERLQVDRLGLDHIDHKLIKGIMTKFNGGPVGLETISATIGEETDTIEEVYEP 301

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           Y++Q GF+QRTPRGR++ P+A++H  +++P++
Sbjct: 302 YLLQIGFLQRTPRGRVVTPLAYEHFNMEVPNK 333


>gi|302872057|ref|YP_003840693.1| Holliday junction DNA helicase RuvB [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302574916|gb|ADL42707.1| Holliday junction DNA helicase RuvB [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 338

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 169/323 (52%), Positives = 227/323 (70%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           E LL    S ED     LRP+TLE++ GQ +    +K+FIEAAK R E LDHVL  GPPG
Sbjct: 2   ERLLDNKFSVEDVHEETLRPKTLEDYIGQQKVKEKIKIFIEAAKKRKEPLDHVLLYGPPG 61

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLA ++A E+GV+ + TSGP I +AGDL A+LTN+ + ++LFIDEIHRL+  +EE+
Sbjct: 62  LGKTTLANIIANEMGVDIKVTSGPAIERAGDLVAILTNIGENNILFIDEIHRLNRTIEEV 121

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPAMED ++D+++G+GPSA+++++ L  FTLI ATTR GLL++PL+DRFGI  RL++Y 
Sbjct: 122 LYPAMEDKKVDIVIGKGPSAKTIRLTLPPFTLIGATTRAGLLSSPLRDRFGIIERLDYYT 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +E+L  IV R A +    +  EA  EIA RSRGTPR+A RLLRR+RD+A V H  +IT E
Sbjct: 182 VEELSQIVMRSASILKCDIEKEACIEIAKRSRGTPRVANRLLRRLRDYATVKHTGSITYE 241

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +A   L    +D+ G D +D   L  I   FGGGPVG+ TI+A + E    IED+ EPY+
Sbjct: 242 VAKNGLEMFEVDEYGLDLVDRNILEAIVYKFGGGPVGLSTIAAAIGEDEGTIEDIYEPYL 301

Query: 305 IQQGFIQRTPRGRLLMPIAWQHL 327
           IQ+GF+ +T RGR+    A  H+
Sbjct: 302 IQEGFLVKTARGRVATQKAINHI 324


>gi|304393329|ref|ZP_07375257.1| holliday junction DNA helicase RuvB [Ahrensia sp. R2A130]
 gi|303294336|gb|EFL88708.1| holliday junction DNA helicase RuvB [Ahrensia sp. R2A130]
          Length = 350

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 232/330 (70%), Positives = 276/330 (83%), Gaps = 1/330 (0%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           + + ++      ED D S +RP  L +FTGQ +A +NL VFIEAAK R EALDHVLFVGP
Sbjct: 5   NEDRIIDGERKTEDHDAS-IRPDRLSDFTGQEQARANLSVFIEAAKQRGEALDHVLFVGP 63

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLAQ++A+ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL+  VE
Sbjct: 64  PGLGKTTLAQIMAKELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLNPAVE 123

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILYPAMED+QLDL++GEGP+ARSVKI+L++FTL+AATTR+GLLT PL+DRFGIPIRL F
Sbjct: 124 EILYPAMEDYQLDLIIGEGPAARSVKIDLAKFTLVAATTRLGLLTTPLRDRFGIPIRLQF 183

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y + +L+ IV+RGA++ G+ + D  A EIA R+RGTPRIAGRLLRRVRDFA VA    IT
Sbjct: 184 YTVPELELIVRRGARIFGIGIEDAGALEIAKRARGTPRIAGRLLRRVRDFAIVAGGDKIT 243

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           R IAD AL +L +D  G D+LD RYL +I  NFGGGPVGIETI+A LSEPRDAIED+IEP
Sbjct: 244 RTIADNALNQLGVDPSGLDELDRRYLDVIGMNFGGGPVGIETIAASLSEPRDAIEDIIEP 303

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           Y+IQQGFIQRTPRGR++ P A+ H+G+ +P
Sbjct: 304 YLIQQGFIQRTPRGRMMTPRAFDHMGLAVP 333


>gi|260428346|ref|ZP_05782325.1| holliday junction DNA helicase RuvB [Citreicella sp. SE45]
 gi|260422838|gb|EEX16089.1| holliday junction DNA helicase RuvB [Citreicella sp. SE45]
          Length = 341

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 209/333 (62%), Positives = 259/333 (77%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M + +  L      ED +   LRP+ L++F GQ EA +NL+VFI++A++R EA+DH LF 
Sbjct: 1   MTEPDPTLRPQRLPED-EGRALRPQMLDDFVGQAEARANLRVFIQSARSRGEAMDHTLFH 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++ARELGVNFR TSGPV+AKAGDLAA+LTNLE RDVLFIDEIHRL+  
Sbjct: 60  GPPGLGKTTLAQIMARELGVNFRMTSGPVLAKAGDLAAILTNLETRDVLFIDEIHRLNPA 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMED++LDL++GEGP+AR+V+I L  FTL+ ATTR+GLLT PL+DRFGIP RL
Sbjct: 120 VEEVLYPAMEDYELDLVIGEGPAARTVRIELQPFTLVGATTRLGLLTTPLRDRFGIPTRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY +++L +IV R A+  G+      A EIA R+RGTPRIAGRLLRRV DFA V     
Sbjct: 180 QFYTVDELNSIVTRNAEKLGVRAEPAGAREIARRARGTPRIAGRLLRRVVDFAVVEGNGV 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +T+++AD AL RL +D MG D  D RYL +IA ++ GGPVGIETISA LSE RDAIE++I
Sbjct: 240 VTQQLADGALTRLGVDGMGLDSADRRYLRLIAEHYAGGPVGIETISAALSESRDAIEEVI 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY++QQG IQRTPRGR+L   AW HLG+  P 
Sbjct: 300 EPYLLQQGLIQRTPRGRMLAQRAWDHLGMPAPK 332


>gi|91978628|ref|YP_571287.1| Holliday junction DNA helicase RuvB [Rhodopseudomonas palustris
           BisB5]
 gi|91685084|gb|ABE41386.1| Holliday junction DNA helicase subunit RuvB [Rhodopseudomonas
           palustris BisB5]
          Length = 360

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 228/333 (68%), Positives = 275/333 (82%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M    L++     +D   + LRP+ L EF GQ +A +NL++FI+AA+ R EALDHVLFVG
Sbjct: 13  MTDPRLVTPERRGDDLGDAALRPQHLSEFVGQQQARANLQIFIDAARKRKEALDHVLFVG 72

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLAQ+VARELGV FR+TSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRLS  V
Sbjct: 73  PPGLGKTTLAQIVARELGVGFRATSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSPAV 132

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMEDFQLDL++GEGP+ARSVKI+LS+FTL+ ATTR GLLTNPL+DRFGIP+RLN
Sbjct: 133 EEVLYPAMEDFQLDLIIGEGPAARSVKIDLSKFTLVGATTRAGLLTNPLRDRFGIPVRLN 192

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY IE+L++IV+RGA++ G  +T + A EIA R+RGTPRIAGRLLRRVRDFA  A A  I
Sbjct: 193 FYTIEELESIVKRGARVLGTGITADGANEIARRARGTPRIAGRLLRRVRDFASAADADAI 252

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
            R+IAD AL  L +D  G D +D RYL+ IA N+GGGPVG+ET++A LSEPRDAIED+IE
Sbjct: 253 DRKIADHALGALEVDAAGLDAMDRRYLSTIALNYGGGPVGVETMAAALSEPRDAIEDIIE 312

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           PY+IQ G++QRTPRGRLL   A++HLG+  P R
Sbjct: 313 PYLIQCGYLQRTPRGRLLTASAFRHLGLAEPAR 345


>gi|90962100|ref|YP_536016.1| Holliday junction DNA helicase RuvB [Lactobacillus salivarius
           UCC118]
 gi|123086776|sp|Q1WT18|RUVB_LACS1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|90821294|gb|ABD99933.1| Holliday junction DNA helicase [Lactobacillus salivarius UCC118]
          Length = 336

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 173/332 (52%), Positives = 226/332 (68%), Gaps = 1/332 (0%)

Query: 1   MMDREGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M D E ++S +  + ED +   LRP+T +++ GQ      + V+I+AAK R E+LDHVL 
Sbjct: 1   MYDEERIVSGDSFEGEDLNEQSLRPQTFDQYIGQKLLKDEISVYIQAAKQREESLDHVLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA V+A E+GV  ++T+GP I K GDL ALL  LE  DVLFIDEIHRL  
Sbjct: 61  YGPPGLGKTTLAIVIANEMGVKIKTTTGPAIEKPGDLVALLNELEPGDVLFIDEIHRLPK 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEEILY AMED+ +D++VG+GP+A  V   L  FTL+ ATTR GLL+ PL+ RFGI   
Sbjct: 121 NVEEILYSAMEDYFIDIIVGQGPTAHPVHFPLPPFTLVGATTRAGLLSAPLRARFGIVGH 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           + +Y   DL  I++R A++    + DE A EIA RSRGTPR+A RLL+RVRDFAEV H  
Sbjct: 181 MEYYNEVDLSQIIKRSAQILSTGIDDEGAHEIARRSRGTPRVANRLLKRVRDFAEVKHKD 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  EI   AL  L +DK+G D+ D + L  +   + GGPVG+ TI+A + E  D I D+
Sbjct: 241 KIDTEIVQFALDLLRVDKVGLDRTDRKLLKAMIELYDGGPVGLNTIAANIGEESDTIADM 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           IEPY++Q GFI+RTPRGR++   A++HLGI  
Sbjct: 301 IEPYLMQIGFIKRTPRGRMVTLAAYEHLGIKY 332


>gi|260551461|ref|ZP_05825645.1| Holliday junction resolvasome [Acinetobacter sp. RUH2624]
 gi|293609858|ref|ZP_06692160.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|260405455|gb|EEW98948.1| Holliday junction resolvasome [Acinetobacter sp. RUH2624]
 gi|292828310|gb|EFF86673.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|325123085|gb|ADY82608.1| Holliday junction DNA helicase B [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 334

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 184/330 (55%), Positives = 240/330 (72%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           ++ L+S     ED     +RP +L ++ GQ      +++FI AA+ R EALDH L  GPP
Sbjct: 2   QDRLISGTEKPEDHFDRAIRPTSLADYIGQPVVREQMEIFIGAARGRGEALDHTLIFGPP 61

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++ARE+G N +STSGPV+ +AGDLAA+LTNLE+ DVLFIDEIHRLS ++EE
Sbjct: 62  GLGKTTLANIIAREMGGNLKSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPVIEE 121

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILYPAMED+QLD+M+GEGP+ARS+K++L  FTL+AATTR GLLT+PL+DRFGI  RL FY
Sbjct: 122 ILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRLEFY 181

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            +EDL  IV R A L  + +T E A E+A RSRGTPRIA RLLRRVRD+A+V     +T 
Sbjct: 182 SVEDLTHIVSRSANLMDVPITVEGAEEVARRSRGTPRIANRLLRRVRDYAQVKGTGEVTH 241

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           E+A  AL  L +DK G D LD RYL+M+   F GGP G+E ++A ++E    +ED+IEPY
Sbjct: 242 EMAQRALDMLNVDKAGLDTLDRRYLSMLLERFDGGPAGVEALAAAMAEDSGTLEDVIEPY 301

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +IQQG++ RT RGR+    ++   G+  P 
Sbjct: 302 LIQQGYVMRTARGRIATNQSYLQFGMTPPE 331


>gi|254448678|ref|ZP_05062136.1| Holliday junction DNA helicase RuvB [gamma proteobacterium
           HTCC5015]
 gi|198261686|gb|EDY85973.1| Holliday junction DNA helicase RuvB [gamma proteobacterium
           HTCC5015]
          Length = 353

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 183/336 (54%), Positives = 239/336 (71%), Gaps = 4/336 (1%)

Query: 2   MDREGLLSR----NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M  + L S        +EDA    +RP  L ++ GQ +    +++FI AA+ R EALDHV
Sbjct: 1   MSDDRLHSPLSPNAEPREDAVDRAIRPVRLADYMGQPKVHEQMEIFISAARQRREALDHV 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTL+ ++A E+GV+ R TSGPV+ + GDLAA+LTNLE+ DVLFIDEIHRL
Sbjct: 61  LIFGPPGLGKTTLSNIIAHEMGVSIRHTSGPVLERPGDLAAILTNLEENDVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           S +VEE+LYPAMEDFQLD+MVGEGP+ARS+K++L  FTL+ ATTR GLLT+PL+DRFGI 
Sbjct: 121 SAVVEEVLYPAMEDFQLDIMVGEGPAARSIKLDLPPFTLVGATTRAGLLTSPLRDRFGIT 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            RL+FY+I+ L  IVQR A +  + + +  A E+A RSRGTPRIA RLLRRVRDFAEV H
Sbjct: 181 QRLSFYDIDTLTKIVQRSAHILNVDMQEAGAREVARRSRGTPRIANRLLRRVRDFAEVRH 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
           A  +T   A  AL  L +D +G D +D   +  I   F GGPVG++ ++A + E R  +E
Sbjct: 241 AGKVTETAAREALDMLDVDSLGLDNMDRLLIQTIIDKFSGGPVGLDNLAAAIGEERGTLE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           D++EPY+IQ+G + RTPRGR+    A+QH G+  P 
Sbjct: 301 DVVEPYLIQEGLLMRTPRGRVATASAYQHFGLKAPE 336


>gi|226945718|ref|YP_002800791.1| Holliday junction DNA helicase RuvB [Azotobacter vinelandii DJ]
 gi|259495660|sp|C1DRF8|RUVB_AZOVD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|226720645|gb|ACO79816.1| holliday junction DNA helicase RuvB [Azotobacter vinelandii DJ]
          Length = 352

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 188/335 (56%), Positives = 247/335 (73%), Gaps = 1/335 (0%)

Query: 1   MMDREGLLSRN-VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L++     +E+     +RP  L E+ GQ      +++FI+AA+ R EALDH L 
Sbjct: 1   MIEADRLITATGQDREEQQDRAIRPLRLAEYIGQPVVREQMELFIQAARGRREALDHTLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A+E+GV+ +STSGPV+ + GDLAALLTNLE  DVLF+DEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIIAQEMGVSLKSTSGPVLERPGDLAALLTNLESGDVLFVDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMEDFQLD+M+GEGP+ARS+K++L  FTL+ ATTR G+LTNPL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDFQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY + DL TIV R A + GL    E A EIA R+RGTPRIA RLLRRVRDFA+V    
Sbjct: 181 LEFYSVADLTTIVGRSAAILGLPTDAEGAFEIARRARGTPRIANRLLRRVRDFAQVRGEG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            ITR+IAD AL  L +D+ G D  D R L  +   F GGPVG+++++A +SE R  IED+
Sbjct: 241 RITRQIADLALNLLDVDEHGLDHQDRRLLLTLIEKFDGGPVGVDSLAAAISEERHTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           +EPY+IQQG++ RTPRGR++   A+ H G+++P R
Sbjct: 301 LEPYLIQQGYMMRTPRGRVVTRHAYLHFGLNLPAR 335


>gi|293390517|ref|ZP_06634851.1| holliday junction DNA helicase RuvB [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951051|gb|EFE01170.1| holliday junction DNA helicase RuvB [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 337

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 191/331 (57%), Positives = 245/331 (74%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + ++S      ED     +RP+ L ++ GQ + C  +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRIISATAKLDEDVIDRAIRPKLLADYVGQPQVCEQMEIFIKAAKLRQDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            +EE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 AIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY + DL +IV R A    L + D AA EIA RSRGTPRIA RLLRRVRD+A+V +  
Sbjct: 181 LEFYSVSDLTSIVSRSAVCLQLKINDTAAYEIARRSRGTPRIANRLLRRVRDYADVRNNG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I+ EIA AAL  L ID  GFD LD + LT +   F GGPVG++ ++A + E RD IED+
Sbjct: 241 MISEEIAKAALSMLDIDDAGFDYLDRKLLTAVLERFDGGPVGLDNLAAAIGEERDTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           +EPY+IQQGF+QRT RGR+     ++H GI+
Sbjct: 301 LEPYLIQQGFLQRTSRGRIATLTTYRHFGIE 331


>gi|290967871|ref|ZP_06559421.1| Holliday junction DNA helicase RuvB [Megasphaera genomosp. type_1
           str. 28L]
 gi|290782010|gb|EFD94588.1| Holliday junction DNA helicase RuvB [Megasphaera genomosp. type_1
           str. 28L]
          Length = 338

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 185/332 (55%), Positives = 243/332 (73%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M+   L+  +    D+    LRP  L+E+ GQ +A  NL+VFI AAK R EALDHVL  G
Sbjct: 1   MEETRLVENHDLPGDSWQYSLRPHYLKEYIGQQQAKQNLEVFIGAAKLRQEALDHVLLYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA +VA E+ V+ R TSGP I + GDLAALLTNL++RDVLFIDEIHRLS  V
Sbjct: 61  PPGLGKTTLAGIVANEMNVSLRITSGPAIERPGDLAALLTNLQERDVLFIDEIHRLSHSV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMED+ LD+++G+GPSARSV+I+L  FTL+ ATT+VG L  PL+DRFG+  RL 
Sbjct: 121 EEVLYAAMEDYALDIVIGKGPSARSVRIDLPPFTLVGATTQVGRLAPPLRDRFGVICRLE 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY+ E+L  I+QR A +  +A+    A EIA RSRGTPRIA RLL+RVRDFA++A    I
Sbjct: 181 FYKPEELVLIIQRTATILNIAIDVSGAMEIARRSRGTPRIANRLLKRVRDFAQMAGETFI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
             ++A +AL RL +D  G D+ D + L +I   F GGPVG++TI+A +SE  DA+ED+ E
Sbjct: 241 HEKMAASALTRLEVDSCGLDRTDRKVLEIIIEKFAGGPVGLDTIAAAISESVDAVEDVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           P+++QQGF+ RTPRGR++   A++HLG+ +P 
Sbjct: 301 PFLMQQGFLHRTPRGRVVTEAAYRHLGLPLPQ 332


>gi|254459640|ref|ZP_05073056.1| Holliday junction DNA helicase RuvB [Rhodobacterales bacterium
           HTCC2083]
 gi|206676229|gb|EDZ40716.1| Holliday junction DNA helicase RuvB [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 340

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 213/333 (63%), Positives = 261/333 (78%), Gaps = 1/333 (0%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD +  +      ED D   LRP+ L+EF GQ EA +NLKVFIE+AK R EA+DH LF G
Sbjct: 1   MDPDPTMRAVELPEDND-RALRPQALDEFIGQAEARANLKVFIESAKRRGEAMDHTLFHG 59

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLAQ+++RELGV+FR TSGPV+AKAGDLAA+LTNLE RDVLFIDEIHRL+ +V
Sbjct: 60  PPGLGKTTLAQIMSRELGVSFRMTSGPVLAKAGDLAAILTNLEARDVLFIDEIHRLNPVV 119

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILYPA+EDF+LDL++GEGP+AR+V+I L  FTL+ ATTR+GLLT PL+DRFGIP RL 
Sbjct: 120 EEILYPALEDFELDLVIGEGPAARTVRIELQPFTLVGATTRLGLLTTPLRDRFGIPTRLE 179

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY  ++L TIV+R A+  G    +  A EIA R+RGTPRIAGRLLRRV DFA V     +
Sbjct: 180 FYTEDELFTIVERNARKLGTPADEGGAREIAKRARGTPRIAGRLLRRVVDFAVVEGDGRV 239

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           TR++AD AL RL +DK+G D  D RYL +IA N+ GGPVGIET+SA LSE RDA+E++IE
Sbjct: 240 TRDLADNALTRLGVDKLGLDGADRRYLRLIAENYQGGPVGIETMSAALSESRDALEEVIE 299

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           P+++QQG IQRTPRGR+L   AW HLG+  P +
Sbjct: 300 PFLLQQGLIQRTPRGRMLAQKAWTHLGMAAPRK 332


>gi|331007237|ref|ZP_08330444.1| Holliday junction DNA helicase RuvB [gamma proteobacterium
           IMCC1989]
 gi|330418953|gb|EGG93412.1| Holliday junction DNA helicase RuvB [gamma proteobacterium
           IMCC1989]
          Length = 344

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 186/326 (57%), Positives = 245/326 (75%), Gaps = 1/326 (0%)

Query: 5   EGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E +++      E+     +RP+TL ++ GQ +    +++FI+AAK R E LDH L  GPP
Sbjct: 10  ERIIAPVAKPMEENQDRAIRPKTLVDYVGQPQVREQMEIFIQAAKKREEPLDHTLVFGPP 69

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++A E+GV   +TSGPVI KAGDLAAL+TNL+  DVLFIDEIHRLS  +EE
Sbjct: 70  GLGKTTLANIIANEMGVQVTATSGPVIEKAGDLAALMTNLQAGDVLFIDEIHRLSPAIEE 129

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ ATTR GLLT+PL+DRFGI  RL FY
Sbjct: 130 VLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGLLTSPLRDRFGIVQRLEFY 189

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            I DL  IV R A+L G+ + +  A EIA RSRGTPRI+ RLLRRVRD+AEV    +IT+
Sbjct: 190 SIPDLTYIVGRSARLLGVEMDEAGAGEIAKRSRGTPRISNRLLRRVRDYAEVKSDGSITQ 249

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           +IADAAL  L++D+ GFD +D R L  +   F GGPVG+E+++A +SE RD IED++EPY
Sbjct: 250 DIADAALNMLSVDQHGFDTMDRRLLLAMIEKFDGGPVGVESLAAAISEERDTIEDVLEPY 309

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGI 329
           +IQQG++ RTPRGR++  +A+ H  I
Sbjct: 310 LIQQGYMARTPRGRIVTQLAYDHFSI 335


>gi|160942947|ref|ZP_02090186.1| hypothetical protein FAEPRAM212_00424 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445848|gb|EDP22851.1| hypothetical protein FAEPRAM212_00424 [Faecalibacterium prausnitzii
           M21/2]
          Length = 351

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 169/327 (51%), Positives = 232/327 (70%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           ++   ++  D + + LRP+ LE++ GQ +A  NLK+++EAAK R E +DH+L  GPPGLG
Sbjct: 12  MMQPVMTPADNEENNLRPQHLEDYIGQEKAKQNLKIYLEAAKRRGEPVDHILLYGPPGLG 71

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTTLA ++A E+GV  R TSGP I K GDLAALLTNL++ DVLFIDEIHRLS  VEE+LY
Sbjct: 72  KTTLAGIIANEMGVQIRITSGPAIEKPGDLAALLTNLQEGDVLFIDEIHRLSRQVEEVLY 131

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           PA+ED+ LD+M+G+GPSA+S++INL RFTL+ ATTR G +T PL+DRFG+ ++L  Y  +
Sbjct: 132 PALEDYALDIMIGKGPSAQSIRINLPRFTLVGATTRAGQITGPLRDRFGVLLKLELYSPD 191

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +L  I+ R A +    +T E A E+A  SRGTPR+A R L+R+RDFA V     I +++A
Sbjct: 192 ELSRIIMRSAGILDQPITPEGAYELAKCSRGTPRVANRFLKRIRDFATVLGDGIIDQDVA 251

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
              L R+ +D +G D+LD   L  I   + GGPVG+ET++A L E    +EDL EPY++Q
Sbjct: 252 LLGLKRMDVDALGLDELDRSLLRAIIEMYNGGPVGLETLAAALGEEAVTLEDLCEPYLMQ 311

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            GF+ RTPRGR    +A++HLG+  P 
Sbjct: 312 MGFLTRTPRGRCATRLAYEHLGMKAPE 338


>gi|261868501|ref|YP_003256423.1| Holliday junction DNA helicase RuvB [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413833|gb|ACX83204.1| holliday junction DNA helicase RuvB [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 339

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 191/331 (57%), Positives = 245/331 (74%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + ++S      ED     +RP+ L ++ GQ + C  +++FI+AAK R +ALDH+L 
Sbjct: 3   MIEADRIISATAKLDEDVIDRAIRPKLLADYVGQPQVCEQMEIFIKAAKLRQDALDHLLI 62

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 63  FGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 122

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            +EE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 123 AIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 182

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY + DL +IV R A    L + D AA EIA RSRGTPRIA RLLRRVRD+A+V +  
Sbjct: 183 LEFYSVSDLTSIVSRSAVCLQLKINDTAAYEIARRSRGTPRIANRLLRRVRDYADVRNNG 242

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I+ EIA AAL  L ID  GFD LD + LT +   F GGPVG++ ++A + E RD IED+
Sbjct: 243 MISEEIAKAALSMLDIDDAGFDYLDRKLLTAVLERFDGGPVGLDNLAAAIGEERDTIEDV 302

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           +EPY+IQQGF+QRT RGR+     ++H GI+
Sbjct: 303 LEPYLIQQGFLQRTSRGRIATLTTYRHFGIE 333


>gi|303237792|ref|ZP_07324350.1| Holliday junction DNA helicase RuvB [Prevotella disiens FB035-09AN]
 gi|302482017|gb|EFL45054.1| Holliday junction DNA helicase RuvB [Prevotella disiens FB035-09AN]
          Length = 350

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 175/328 (53%), Positives = 230/328 (70%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M +   +    VS E    + LRP   ++F+GQ +   NL+VF+EAAK R E LDH L  
Sbjct: 11  MNEDFNIREERVSAEKEFENALRPPKFDDFSGQDKVVENLRVFVEAAKYRGEPLDHTLLH 70

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTL+ ++A ELGV F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS +
Sbjct: 71  GPPGLGKTTLSNIIANELGVGFKITSGPVLDKPGDLAGILTSLEPNDVLFIDEIHRLSPV 130

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE LY AMED+++D+M+ +GPSARS++I+L+ FTL+ ATTR GLLT PL+ RFGI + L
Sbjct: 131 VEEYLYSAMEDYRIDIMIDKGPSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGINLHL 190

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y  E L  I++R A L  + + ++AA EIA RSRGTPRI   LLRRVRDFA+V    T
Sbjct: 191 EYYAPETLSKIIKRSANLLKVPIYEDAAVEIARRSRGTPRICNSLLRRVRDFAQVKGNGT 250

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I   IA ++L  L IDK G D++D + L  I   F GGPVGI TI+  + E    +E++ 
Sbjct: 251 IDHAIAQSSLQALNIDKYGLDEIDNKILLTIIDKFRGGPVGISTIATAIGEDGGTVEEVY 310

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
           EPY+I +GFI+RTPRGR+   +A++HLG
Sbjct: 311 EPYLIMEGFIKRTPRGRMATALAYEHLG 338


>gi|291522296|emb|CBK80589.1| Holliday junction DNA helicase, RuvB subunit [Coprococcus catus
           GD/7]
          Length = 333

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 168/328 (51%), Positives = 235/328 (71%), Gaps = 1/328 (0%)

Query: 6   GLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
            +++   ++ED  I   LRP+ L+++ GQ +    L ++IEAA+ R E LDHVLF GPPG
Sbjct: 4   RIITTEFAEEDVKIENHLRPQLLKDYIGQQKVKETLSIYIEAARQREEPLDHVLFYGPPG 63

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLA ++A E+GV  + TSGP I K G++AA+L NL + DVLFIDEIHRL+  VEE+
Sbjct: 64  LGKTTLAGIIANEMGVKMKVTSGPAIEKPGEIAAILNNLSEGDVLFIDEIHRLNRQVEEV 123

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPAMEDF +D+++G+G +ARS++++L +FTL+ ATTR GLLT PL+DRFG+  RL FY 
Sbjct: 124 LYPAMEDFAIDIVIGKGAAARSIRLDLPKFTLVGATTRAGLLTAPLRDRFGVVSRLEFYS 183

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            +DL TI++R A++  + + +  A E+A RSRGTPR+A RLL+RVRD+A+V H   IT +
Sbjct: 184 TQDLMTIIRRSAEVLHVKIDERGAEELARRSRGTPRLANRLLKRVRDYAQVCHDGVITLQ 243

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +A+ AL  L +DK G DQ D   L  +   F GGPVG++T++A L E    +E++ EPY+
Sbjct: 244 VANEALDLLDVDKYGLDQSDRNILLTMMNKFRGGPVGLDTLAAALGEDSGTLEEVYEPYL 303

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           I+ GFIQRTPRGR++  +A  H GI   
Sbjct: 304 IKNGFIQRTPRGRVVTELARAHCGIPAD 331


>gi|189485461|ref|YP_001956402.1| Holliday junction resolvasome helicase subunit RuvB [uncultured
           Termite group 1 bacterium phylotype Rs-D17]
 gi|170287420|dbj|BAG13941.1| Holliday junction resolvasome helicase subunit RuvB [uncultured
           Termite group 1 bacterium phylotype Rs-D17]
          Length = 340

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 179/334 (53%), Positives = 242/334 (72%), Gaps = 2/334 (0%)

Query: 1   MMDREGLLS-RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M + + ++    +++E+   + LRP+ L++F GQ +  +NLK+FIEAAK R EALDH LF
Sbjct: 1   MNEIKRIVEGSKLTEENRIENSLRPQILDDFIGQDKLKNNLKIFIEAAKKRHEALDHCLF 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
             P GLGKTTL+ ++A+E+G N R TSGPV+ + GDLAA+LTNL D DV FIDEIHR++ 
Sbjct: 61  YAPHGLGKTTLSHIIAKEMGCNLRITSGPVLERVGDLAAILTNLSDGDVFFIDEIHRMNH 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEE LYP MEDF+LD+++G+GPSAR++K+ + RFTLI ATTR GLL++PL+DRFGI   
Sbjct: 121 FVEESLYPVMEDFELDIIIGQGPSARTIKLPVPRFTLIGATTRAGLLSSPLRDRFGIIEH 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L+FY I++L+ IV R A +  + V ++A  EIA RSRGTPRI  RLL+RVRDFAEV    
Sbjct: 181 LDFYAIKELEHIVNRSAAIMNIGVDEDAGKEIARRSRGTPRIVNRLLKRVRDFAEVRG-G 239

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT  IA  AL  L +D  G D++D   LT++   FGGGPVGI+TI+  ++E  D I D+
Sbjct: 240 KITHAIAKGALNALEVDSAGLDKIDRLILTVLIEKFGGGPVGIDTIATAVAEESDTITDV 299

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            EPY+IQ GF+ RTPRGR++    ++H+GID P 
Sbjct: 300 YEPYLIQSGFVARTPRGRVVTSDGYKHIGIDPPK 333


>gi|169632719|ref|YP_001706455.1| Holliday junction DNA helicase RuvB [Acinetobacter baumannii SDF]
 gi|169795064|ref|YP_001712857.1| Holliday junction DNA helicase RuvB [Acinetobacter baumannii AYE]
 gi|184159150|ref|YP_001847489.1| Holliday junction DNA helicase RuvB [Acinetobacter baumannii ACICU]
 gi|213158274|ref|YP_002320325.1| Holliday junction DNA helicase RuvB [Acinetobacter baumannii
           AB0057]
 gi|215482613|ref|YP_002324805.1| Holliday junction DNA helicase RuvB [Acinetobacter baumannii
           AB307-0294]
 gi|239501032|ref|ZP_04660342.1| Holliday junction DNA helicase RuvB [Acinetobacter baumannii AB900]
 gi|260556548|ref|ZP_05828766.1| Holliday junction DNA helicase RuvB [Acinetobacter baumannii ATCC
           19606]
 gi|301344816|ref|ZP_07225557.1| Holliday junction DNA helicase RuvB [Acinetobacter baumannii AB056]
 gi|301510229|ref|ZP_07235466.1| Holliday junction DNA helicase RuvB [Acinetobacter baumannii AB058]
 gi|301595122|ref|ZP_07240130.1| Holliday junction DNA helicase RuvB [Acinetobacter baumannii AB059]
 gi|332851088|ref|ZP_08433197.1| Holliday junction DNA helicase RuvB [Acinetobacter baumannii
           6013150]
 gi|332869663|ref|ZP_08438851.1| Holliday junction DNA helicase RuvB [Acinetobacter baumannii
           6013113]
 gi|332875978|ref|ZP_08443764.1| Holliday junction DNA helicase RuvB [Acinetobacter baumannii
           6014059]
 gi|172044075|sp|A3M7W1|RUVB_ACIBT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|226725449|sp|B7GYB5|RUVB_ACIB3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|226725450|sp|B7I5A9|RUVB_ACIB5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|238688102|sp|B0VDI5|RUVB_ACIBY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|238688252|sp|B0VT89|RUVB_ACIBS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|238690990|sp|B2HWT3|RUVB_ACIBC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|169147991|emb|CAM85854.1| holliday junction helicase, subunit B [Acinetobacter baumannii AYE]
 gi|169151511|emb|CAP00276.1| holliday junction helicase, subunit B [Acinetobacter baumannii]
 gi|183210744|gb|ACC58142.1| Holliday junction resolvasome, helicase subunit [Acinetobacter
           baumannii ACICU]
 gi|193078071|gb|ABO13005.2| holliday junction helicase subunit B [Acinetobacter baumannii ATCC
           17978]
 gi|213057434|gb|ACJ42336.1| Holliday junction DNA helicase RuvB [Acinetobacter baumannii
           AB0057]
 gi|213988745|gb|ACJ59044.1| Holliday junction DNA helicase RuvB [Acinetobacter baumannii
           AB307-0294]
 gi|260409807|gb|EEX03107.1| Holliday junction DNA helicase RuvB [Acinetobacter baumannii ATCC
           19606]
 gi|322509063|gb|ADX04517.1| ruvB [Acinetobacter baumannii 1656-2]
 gi|323519044|gb|ADX93425.1| Holliday junction DNA helicase RuvB [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332730252|gb|EGJ61577.1| Holliday junction DNA helicase RuvB [Acinetobacter baumannii
           6013150]
 gi|332732565|gb|EGJ63798.1| Holliday junction DNA helicase RuvB [Acinetobacter baumannii
           6013113]
 gi|332735844|gb|EGJ66885.1| Holliday junction DNA helicase RuvB [Acinetobacter baumannii
           6014059]
          Length = 334

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 183/330 (55%), Positives = 239/330 (72%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           ++ L+S     ED     +RP +L ++ GQ      +++FI AA+ R EALDH L  GPP
Sbjct: 2   QDRLISGTEKPEDHFDRAIRPTSLADYIGQPVVREQMEIFIGAARGRGEALDHTLIFGPP 61

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++ARE+G N +STSGPV+ +AGDLAA+LTNLE+ DVLFIDEIHRLS ++EE
Sbjct: 62  GLGKTTLANIIAREMGGNLKSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPVIEE 121

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILYPAMED+QLD+M+GEGP+ARS+K++L  FTL+AATTR GLLT+PL+DRFGI  RL FY
Sbjct: 122 ILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRLEFY 181

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            +EDL  IV R A L  + +T E A E+A RSRGTPRIA RLLRRVRD+A+V     +  
Sbjct: 182 SVEDLTHIVSRSANLMDVPITVEGAEEVARRSRGTPRIANRLLRRVRDYAQVKGTGEVNH 241

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           E+A  AL  L +DK G D LD RYL+M+   F GGP G+E ++A ++E    +ED+IEPY
Sbjct: 242 EMAQRALDMLNVDKAGLDTLDRRYLSMLLERFDGGPAGVEALAAAMAEDSGTLEDVIEPY 301

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +IQQG++ RT RGR+    ++   G+  P 
Sbjct: 302 LIQQGYVMRTARGRIATNQSYLQFGMTPPE 331


>gi|146296578|ref|YP_001180349.1| Holliday junction DNA helicase B [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|166231474|sp|A4XJS3|RUVB_CALS8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|145410154|gb|ABP67158.1| Holliday junction DNA helicase subunit RuvB [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 338

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 169/323 (52%), Positives = 228/323 (70%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           E LL    S ED     LRP+TLE++ GQ +    +K+FIEAAK R E LDHVL  GPPG
Sbjct: 2   ERLLDNKFSIEDVHEESLRPKTLEDYIGQQKVKEKIKIFIEAAKKRKEPLDHVLLYGPPG 61

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLA ++A E+GV+ + TSGP I +AGDL A+LTN+ + ++LFIDEIHRL+  +EE+
Sbjct: 62  LGKTTLANIIANEMGVDIKVTSGPAIERAGDLVAILTNIGENNILFIDEIHRLNRTIEEV 121

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPAMED ++D+++G+GPSA+++++ L  FTLI ATTR GLL++PL+DRFGI  RL++Y 
Sbjct: 122 LYPAMEDKKVDIVIGKGPSAKTIRLTLPPFTLIGATTRAGLLSSPLRDRFGIIERLDYYT 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +E+L  IV R A +    +  EA  EIA RSRGTPR+A RLLRR+RD+A V H  +IT E
Sbjct: 182 VEELSQIVMRSASILKCDIEKEACIEIAKRSRGTPRVANRLLRRLRDYAMVKHTGSITYE 241

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +A + L    +D+ G D +D   L  I   FGGGPVG+ TI+A + E    IED+ EPY+
Sbjct: 242 VAKSGLEMFEVDEYGLDLVDRNILEAIVYKFGGGPVGLSTIAAAIGEDEGTIEDIYEPYL 301

Query: 305 IQQGFIQRTPRGRLLMPIAWQHL 327
           IQ+GF+ +T RGR+    A  H+
Sbjct: 302 IQEGFLVKTARGRVATQKAINHI 324


>gi|78045225|ref|YP_360354.1| Holliday junction DNA helicase RuvB [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|97189970|sp|Q3ABY0|RUVB_CARHZ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|77997340|gb|ABB16239.1| Holliday junction DNA helicase RuvB [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 339

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 185/328 (56%), Positives = 235/328 (71%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
            E L+S     ED +   LRPR L E+ GQ +    + +FIEAAK R EALDHVL  GPP
Sbjct: 2   EERLVSGYELTEDENEFSLRPRRLSEYIGQQKVKETISIFIEAAKKRNEALDHVLLFGPP 61

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++A ELGV+ + TSGP + + GDLAA+LTNL ++DVLFIDEIHRL  IVEE
Sbjct: 62  GLGKTTLATIIANELGVDIKITSGPALERPGDLAAILTNLGEKDVLFIDEIHRLPRIVEE 121

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LY AMEDF LD+M+G+GP ARS++++L +FTLI ATTR GLLT+PL+DRFG+  RL FY
Sbjct: 122 VLYSAMEDFALDIMLGKGPGARSLRLSLPKFTLIGATTRAGLLTSPLRDRFGMVHRLEFY 181

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            +E+L  I+ R A L    +T E + EIA RSRGTPRIA RLL+RVRD+AEV  +  I  
Sbjct: 182 SVEELMLIINRSAALLKTEITPEGSFEIAKRSRGTPRIANRLLKRVRDYAEVRSSGVINL 241

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           E A AAL  L ID++G D  D   L  +   + GGPVGIE I+A +SE  D IED+ EP+
Sbjct: 242 ENAKAALDLLEIDELGLDPTDRLILKTMIEKYQGGPVGIEAIAAAISEEVDTIEDVYEPF 301

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           ++Q GFI+RTPRGR++  +A+ HLGI  
Sbjct: 302 LLQIGFIKRTPRGRVVTKLAYDHLGIAY 329


>gi|295103888|emb|CBL01432.1| Holliday junction DNA helicase, RuvB subunit [Faecalibacterium
           prausnitzii SL3/3]
          Length = 351

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 170/327 (51%), Positives = 232/327 (70%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           ++   ++  D + + LRP+ LE++ GQ +A  NLK+++EAAK R E +DH+L  GPPGLG
Sbjct: 12  MMQPVMTPADNEENNLRPQHLEDYIGQEKAKQNLKIYLEAAKRRGEPVDHILLYGPPGLG 71

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTTLA ++A E+GV  R TSGP I K GDLAALLTNL++ DVLFIDEIHRLS  VEE+LY
Sbjct: 72  KTTLAGIIANEMGVQIRITSGPAIEKPGDLAALLTNLQEGDVLFIDEIHRLSRQVEEVLY 131

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           PA+ED+ LD+M+G+GPSA+S++INL RFTL+ ATTR G +T PL+DRFG+ ++L  Y  +
Sbjct: 132 PALEDYALDIMIGKGPSAQSIRINLPRFTLVGATTRAGQITGPLRDRFGVLLKLELYSPD 191

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +L  I+ R A +    +T E A E+A  SRGTPR+A R L+R+RDFA V     I R++A
Sbjct: 192 ELSRIIMRSAGILDQPITPEGAYELAKCSRGTPRVANRFLKRIRDFATVLGDGIIDRDVA 251

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
              L R+ +D +G D+LD   L  I   + GGPVG+ET++A L E    +EDL EPY++Q
Sbjct: 252 LLGLKRMDVDALGLDELDRSLLRAIIEMYNGGPVGLETLAAALGEEAVTLEDLCEPYLMQ 311

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            GF+ RTPRGR    +A++HLG+  P 
Sbjct: 312 MGFLTRTPRGRCATRLAYEHLGMKAPE 338


>gi|299769121|ref|YP_003731147.1| Holliday junction DNA helicase RuvB [Acinetobacter sp. DR1]
 gi|298699209|gb|ADI89774.1| Holliday junction DNA helicase RuvB [Acinetobacter sp. DR1]
          Length = 334

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 183/330 (55%), Positives = 240/330 (72%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           ++ L+S     ED     +RP +L ++ GQ      +++FI AA+ R EALDH L  GPP
Sbjct: 2   QDRLISGAEKPEDHFDRAIRPTSLADYIGQPVVREQMEIFIGAARGRGEALDHTLIFGPP 61

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++ARE+G N +STSGPV+ +AGDLAA+LTNLE+ DVLFIDEIHRLS ++EE
Sbjct: 62  GLGKTTLANIIAREMGGNLKSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPVIEE 121

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILYPAMED+QLD+M+GEGP+ARS+K++L  FTL+AATTR GLLT+PL+DRFGI  RL FY
Sbjct: 122 ILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRLEFY 181

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            +EDL  IV R A L  + +T E A E+A R+RGTPRIA RLLRRVRD+A+V     +T 
Sbjct: 182 SVEDLTHIVSRSANLMNVPITVEGAEEVARRARGTPRIANRLLRRVRDYAQVKGTGEVTH 241

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           E+A  AL  L +DK G D LD RYL+M+   F GGP G+E ++A ++E    +ED+IEPY
Sbjct: 242 EMAQRALDMLNVDKAGLDTLDRRYLSMLLERFDGGPAGVEALAAAMAEDSGTLEDVIEPY 301

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +IQQG++ RT RGR+    ++   G+  P 
Sbjct: 302 LIQQGYVMRTARGRIATNQSYLQFGMTPPE 331


>gi|312877190|ref|ZP_07737159.1| Holliday junction DNA helicase RuvB [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311795999|gb|EFR12359.1| Holliday junction DNA helicase RuvB [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 338

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 170/323 (52%), Positives = 228/323 (70%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           E LL    S ED     LRP+TLE++ GQ +    +K+FIEAAK R E LDHVL  GPPG
Sbjct: 2   ERLLDNKFSVEDVHEESLRPKTLEDYIGQQKVKEKIKIFIEAAKKRKEPLDHVLLYGPPG 61

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLA ++A E+GV+ + TSGP I +AGDL A+LTN+ + ++LFIDEIHRL+  +EE+
Sbjct: 62  LGKTTLANIIANEMGVDIKVTSGPAIERAGDLVAILTNIGENNILFIDEIHRLNRTIEEV 121

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPAMED ++D+M+G+GPSA+++++ L  FTLI ATTR GLL++PL+DRFGI  RL++Y 
Sbjct: 122 LYPAMEDKKVDIMIGKGPSAKTIRLTLPPFTLIGATTRAGLLSSPLRDRFGIIERLDYYT 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +E+L  IV R A +    +  EA  EIA RSRGTPR+A RLLRR+RD+A V H  +IT E
Sbjct: 182 VEELSQIVMRSASILKCDIEKEACIEIAKRSRGTPRVANRLLRRLRDYAMVKHTGSITYE 241

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +A + L    +D+ G D +D   L  I   FGGGPVG+ TI+A + E    IED+ EPY+
Sbjct: 242 VAKSGLEMFEVDEYGLDLVDRNILEAIVYKFGGGPVGLSTIAAAIGEDEGTIEDIYEPYL 301

Query: 305 IQQGFIQRTPRGRLLMPIAWQHL 327
           IQ+GF+ +T RGR+    A  H+
Sbjct: 302 IQEGFLVKTARGRVATQKAINHI 324


>gi|172046846|sp|Q130V3|RUVB_RHOPS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
          Length = 348

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 228/333 (68%), Positives = 275/333 (82%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M    L++     +D   + LRP+ L EF GQ +A +NL++FI+AA+ R EALDHVLFVG
Sbjct: 1   MTDPRLVTPERRGDDLGDAALRPQHLSEFVGQQQARANLQIFIDAARKRKEALDHVLFVG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLAQ+VARELGV FR+TSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRLS  V
Sbjct: 61  PPGLGKTTLAQIVARELGVGFRATSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSPAV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMEDFQLDL++GEGP+ARSVKI+LS+FTL+ ATTR GLLTNPL+DRFGIP+RLN
Sbjct: 121 EEVLYPAMEDFQLDLIIGEGPAARSVKIDLSKFTLVGATTRAGLLTNPLRDRFGIPVRLN 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY IE+L++IV+RGA++ G  +T + A EIA R+RGTPRIAGRLLRRVRDFA  A A  I
Sbjct: 181 FYTIEELESIVKRGARVLGTGITADGANEIARRARGTPRIAGRLLRRVRDFASAADADAI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
            R+IAD AL  L +D  G D +D RYL+ IA N+GGGPVG+ET++A LSEPRDAIED+IE
Sbjct: 241 DRKIADHALGALEVDAAGLDAMDRRYLSTIALNYGGGPVGVETMAAALSEPRDAIEDIIE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           PY+IQ G++QRTPRGRLL   A++HLG+  P R
Sbjct: 301 PYLIQCGYLQRTPRGRLLTASAFRHLGLAEPAR 333


>gi|312793295|ref|YP_004026218.1| holliday junction DNA helicase ruvb [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312180435|gb|ADQ40605.1| Holliday junction DNA helicase RuvB [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 338

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 169/323 (52%), Positives = 228/323 (70%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           E LL    S ED     LRP+TLE++ GQ +    +K+FIEAAK R E LDHVL  GPPG
Sbjct: 2   ERLLDNKFSVEDVHEESLRPKTLEDYIGQQKVKEKIKIFIEAAKKRKEPLDHVLLYGPPG 61

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLA ++A E+GV+ + TSGP I +AGDL A+LTN+ + ++LFIDEIHRL+  +EE+
Sbjct: 62  LGKTTLANIIANEMGVDIKVTSGPAIERAGDLVAILTNIGENNILFIDEIHRLNRTIEEV 121

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPAMED ++D+++G+GPSA+++++ L  FTLI ATTR GLL++PL+DRFGI  RL++Y 
Sbjct: 122 LYPAMEDKKVDIVIGKGPSAKTIRLTLPPFTLIGATTRAGLLSSPLRDRFGIIERLDYYT 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +E+L  IV R A +    +  EA  EIA RSRGTPR+A RLLRR+RD+A V H  +IT E
Sbjct: 182 VEELSQIVMRSASILKCDIEKEACIEIAKRSRGTPRVANRLLRRLRDYAMVKHTGSITYE 241

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +A + L    +D+ G D +D   L  I   FGGGPVG+ TI+A + E    IED+ EPY+
Sbjct: 242 VAKSGLEMFEVDEYGLDLVDRNILEAIVYKFGGGPVGLSTIAAAIGEDEGTIEDIYEPYL 301

Query: 305 IQQGFIQRTPRGRLLMPIAWQHL 327
           IQ+GF+ +T RGR+    A  H+
Sbjct: 302 IQEGFLVKTARGRVATQKAINHI 324


>gi|153955758|ref|YP_001396523.1| Holliday junction DNA helicase RuvB [Clostridium kluyveri DSM 555]
 gi|219856125|ref|YP_002473247.1| hypothetical protein CKR_2782 [Clostridium kluyveri NBRC 12016]
 gi|189046026|sp|A5N206|RUVB_CLOK5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|254767421|sp|B9E5Q8|RUVB_CLOK1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|146348616|gb|EDK35152.1| RuvB [Clostridium kluyveri DSM 555]
 gi|219569849|dbj|BAH07833.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 350

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 179/327 (54%), Positives = 235/327 (71%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M+   +   N+  +      LRP++L+E+ GQ +    LK+FIEAAK R EALDHVLF G
Sbjct: 1   MEDRIVTPLNIRGDAESEYSLRPKSLKEYIGQRKVKEKLKIFIEAAKNRKEALDHVLFYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+G N + TSGP I +AGDLAA+LT L+DRDVLFIDEIHRL+  V
Sbjct: 61  PPGLGKTTLANIIALEMGGNLKITSGPAIERAGDLAAILTGLDDRDVLFIDEIHRLNRSV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILYPAMED+ LD+++G+G S +S++++L RFTLI ATTRVGLLT PL+DRFG+   ++
Sbjct: 121 EEILYPAMEDYALDIVIGKGASTKSIRLDLPRFTLIGATTRVGLLTAPLRDRFGVLCPMD 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY+ E+L  IV R   +  + +  EA+ EI  RSRGTPRIA RLL+RVRD++EV    TI
Sbjct: 181 FYDQEELSEIVVRSCNILKIRIEPEASVEIGKRSRGTPRIANRLLKRVRDYSEVKGNGTI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
             + + AAL  L +DK GFD +D + L  I  NF GGPVGIET++  + E  D IED+ E
Sbjct: 241 DLKTSKAALELLEVDKEGFDSIDNKILRAIIDNFNGGPVGIETLAYFIGEELDTIEDVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLG 328
           PY++Q+GFI RTPRGR+    A++H  
Sbjct: 301 PYLLQKGFIIRTPRGRIASDSAYKHFN 327


>gi|147677362|ref|YP_001211577.1| Holliday junction DNA helicase RuvB [Pelotomaculum
           thermopropionicum SI]
 gi|189046040|sp|A5D3G1|RUVB_PELTS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|146273459|dbj|BAF59208.1| holliday junction resolvasome, helicase subunit [Pelotomaculum
           thermopropionicum SI]
          Length = 341

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 180/329 (54%), Positives = 241/329 (73%), Gaps = 1/329 (0%)

Query: 4   REGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           ++ L+S     EDAD+ + LRPR L E+ GQ +    + VFI+AA+ R E LDHVL  GP
Sbjct: 2   KDRLISAVARPEDADVDTSLRPRLLAEYIGQEKVKETISVFIQAARGRGEPLDHVLLFGP 61

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++A E+GV+ R+TSGP + + GDLAA+LT+L   D+LFIDEIHRLS  VE
Sbjct: 62  PGLGKTTLANIIANEMGVSIRTTSGPAVERPGDLAAILTSLSQGDILFIDEIHRLSRTVE 121

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMED+ LD+++G+GP ARS+++ L RFTL+ ATTR GLLT+PL+DRFG+  RL +
Sbjct: 122 EVLYPAMEDYALDIVIGKGPGARSLRLELPRFTLVGATTRAGLLTSPLRDRFGVISRLEY 181

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  EDL  IV R A++ G+ +T E A EIA RSRGTPR+A RLL+RVRD+A+V     IT
Sbjct: 182 YRPEDLVLIVNRSARILGIEITAEGAFEIARRSRGTPRVANRLLKRVRDYAQVRANGVIT 241

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            E+A  AL  L +D +G D  D R L  I + FGGGPVG+ETI+  ++E  + +ED+ EP
Sbjct: 242 CEVAVEALKFLEVDPLGLDFADRRLLLTIIQKFGGGPVGLETIATAVNEEPETVEDVYEP 301

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           Y+IQ G + RTPRGR+  P+A++HLG++ 
Sbjct: 302 YLIQLGMLARTPRGRVTTPLAFRHLGLEP 330


>gi|251793065|ref|YP_003007791.1| Holliday junction DNA helicase RuvB [Aggregatibacter aphrophilus
           NJ8700]
 gi|247534458|gb|ACS97704.1| holliday junction DNA helicase RuvB [Aggregatibacter aphrophilus
           NJ8700]
          Length = 334

 Score =  369 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 189/331 (57%), Positives = 243/331 (73%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + ++S      ED     +RP+ L ++ GQ + C  +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRIISATAKLDEDVIDRAIRPKLLADYVGQPQVCEQMEIFIKAAKLRQDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            +EE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 AIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY + DL +IV R A    L +   AA EIA RSRGTPRIA RLLRRVRD+A+V +  
Sbjct: 181 LEFYSVSDLTSIVSRSAVCLQLKIDVAAAYEIARRSRGTPRIANRLLRRVRDYADVRNNG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT  IA AAL  L ID  GFD LD + L  +   F GGPVG++ ++A + E RD IED+
Sbjct: 241 MITEAIAKAALAMLDIDDAGFDYLDRKLLMAVLERFDGGPVGLDNLAAAIGEERDTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           +EPY+IQQGF+QRTPRGR+     ++H G++
Sbjct: 301 VEPYLIQQGFLQRTPRGRIATLTTYRHFGVE 331


>gi|291544345|emb|CBL17454.1| Holliday junction DNA helicase, RuvB subunit [Ruminococcus sp.
           18P13]
          Length = 336

 Score =  369 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 180/325 (55%), Positives = 236/325 (72%), Gaps = 1/325 (0%)

Query: 7   LLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           + +   +  D ++   LRP+TL E+ GQ +   NL V+IEAA+ R E LDHVL  GPPGL
Sbjct: 1   MTAPEFTPPDVELEFSLRPKTLNEYIGQDKVKENLAVYIEAARRRGEPLDHVLLYGPPGL 60

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLA ++A+E+GVN R TSGP I KAGDLAALLTNL + DVLFIDEIHRLS  VEE+L
Sbjct: 61  GKTTLAGIIAQEMGVNLRITSGPAIEKAGDLAALLTNLSENDVLFIDEIHRLSRAVEEVL 120

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           YPAMED  LD+++G+GPSA S++++L +FTL+ ATTR G LT+PL+DRFGI  RL  Y  
Sbjct: 121 YPAMEDNALDIVIGKGPSANSIRVDLPKFTLVGATTRAGQLTSPLRDRFGIIQRLELYPP 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           E L  I++R + L G+    + A E+A R+RGTPRIA RLL+RVRDFA+V     I+R+I
Sbjct: 181 EQLCDIIRRSSMLLGIPCEYDGAMELARRARGTPRIANRLLKRVRDFADVMGDGRISRQI 240

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           A  AL +L ID++G D LD R L MI + + GGPVG+ET+++ + E    +ED+ EPY++
Sbjct: 241 ACTALDKLEIDELGLDSLDKRMLQMIIKGYNGGPVGLETLASAIGEEAVTLEDVCEPYLM 300

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGID 330
           Q GF+ RTPRGR    +A+QHLGI 
Sbjct: 301 QLGFLSRTPRGRCATQLAYQHLGIP 325


>gi|297569178|ref|YP_003690522.1| Holliday junction DNA helicase RuvB [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296925093|gb|ADH85903.1| Holliday junction DNA helicase RuvB [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 363

 Score =  369 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 184/328 (56%), Positives = 239/328 (72%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M   E ++S +    D     LRP+ L ++ GQ +   NL++ I AAK R EALDH LF 
Sbjct: 1   MNQEERVVSPDAVTGDLCEVALRPKLLNQYIGQEQVKENLEIAIAAAKGRGEALDHTLFH 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           G PGLGKTTLA V+A E+G   R TSGPVI +AGDLAA+LT+L++ DVLFIDEIHRL+ +
Sbjct: 61  GFPGLGKTTLAYVIANEMGAGIRVTSGPVIERAGDLAAILTSLQEGDVLFIDEIHRLNHV 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILYPAMEDF+LDL++G+GP ARSVK++L RFTL+ ATTR GLLT PL+DRFG+ +RL
Sbjct: 121 VEEILYPAMEDFELDLVIGQGPGARSVKMSLPRFTLVGATTRTGLLTPPLRDRFGLSLRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           +FY  E+L  IV+R A+L G+ +    A EI  RSRGTPRIA RLLRR+RDFAEV     
Sbjct: 181 DFYAPEELVAIVKRSAELLGVPIDQAGALEIGRRSRGTPRIANRLLRRLRDFAEVKGRGK 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           IT EIADAAL  L +D +GFD++D R L  +   F GGP+G+ET++  + E ++ +ED+ 
Sbjct: 241 ITAEIADAALSMLGVDLLGFDEMDRRILLALIDRFQGGPIGLETLATMVCEEKNTLEDVY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
           EP++IQ GF+ RTPRGR+    A++H G
Sbjct: 301 EPFLIQAGFLVRTPRGRMATRAAYEHFG 328


>gi|325923398|ref|ZP_08185063.1| Holliday junction DNA helicase subunit RuvB [Xanthomonas gardneri
           ATCC 19865]
 gi|325546113|gb|EGD17302.1| Holliday junction DNA helicase subunit RuvB [Xanthomonas gardneri
           ATCC 19865]
          Length = 345

 Score =  369 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 194/330 (58%), Positives = 246/330 (74%), Gaps = 1/330 (0%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MDR  + S    ++DA  + +RP+ L ++ GQ      + ++I+AAKAR EA+DHVL  G
Sbjct: 1   MDR-IIASSATREDDAADASIRPKRLADYLGQQPVREQMDIYIQAAKARGEAMDHVLIFG 59

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTL+ V+A ELGV+ RSTSGPVI KAGDLAALLTNL+  DVLFIDEIHRLS +V
Sbjct: 60  PPGLGKTTLSHVIANELGVSLRSTSGPVIEKAGDLAALLTNLQPHDVLFIDEIHRLSPVV 119

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMEDFQ+D+M+G+GP+ARS+KI+L  FTLI ATTR GLLT PL+DRFGI  RL 
Sbjct: 120 EEVLYPAMEDFQIDIMIGDGPAARSIKIDLPPFTLIGATTRAGLLTAPLRDRFGIVQRLE 179

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY  E+L  IV R A + G+  T + A EIA R+RGTPRIA RLLRRVRDFA+V  +  I
Sbjct: 180 FYSPEELTRIVIRSAAILGIDCTPDGAAEIARRARGTPRIANRLLRRVRDFAQVKASGHI 239

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
              +A AA+  L +D  GFD+LD R L +I  +F GGPVG+E+++A LSE R  +ED+IE
Sbjct: 240 DLPVAQAAMQMLKVDPEGFDELDRRMLRVIVDHFDGGPVGVESLAASLSEERGTLEDVIE 299

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           PY+IQQGF+ RT RGR+    A++HLG+  
Sbjct: 300 PYLIQQGFLIRTARGRMATNKAYRHLGLKP 329


>gi|172046771|sp|Q07H98|RUVB_RHOP5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
          Length = 347

 Score =  369 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 227/334 (67%), Positives = 272/334 (81%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M     +++     +D   + LRP+TL EF GQ +A +NL++FI+AA+ R EALDHVLFV
Sbjct: 1   MTPPSRIVTPERRADDVGDTALRPQTLAEFVGQQQARANLQIFIDAARKRQEALDHVLFV 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ+VARELGV FR+TSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRLS  
Sbjct: 61  GPPGLGKTTLAQIVARELGVGFRATSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSPA 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDFQLDL++GEGP+ARSVKI LS+FTL+ ATTR GLLTNPL+DRFGIPIRL
Sbjct: 121 VEEVLYPAMEDFQLDLIIGEGPAARSVKIELSKFTLVGATTRAGLLTNPLRDRFGIPIRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           NFY +E+L+ IV RGA++ G  +T + A EIA R+RGTPRIAGRLLRRVRDFA  A A  
Sbjct: 181 NFYTVEELEGIVSRGARVLGTGITPDGANEIARRARGTPRIAGRLLRRVRDFASAADAAA 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I R IAD AL  L +D  G D +D RYL+ IA N+GGGPVG+ET++A LSEPRDAIED+I
Sbjct: 241 IDRRIADHALSALEVDAAGLDAMDRRYLSTIALNYGGGPVGVETMAAALSEPRDAIEDII 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           EP++IQ G++QRTPRGRLL   A++HLG+  P R
Sbjct: 301 EPFLIQCGYLQRTPRGRLLTSHAFKHLGLAEPSR 334


>gi|90417111|ref|ZP_01225039.1| Holliday junction DNA helicase RuvB [marine gamma proteobacterium
           HTCC2207]
 gi|90331127|gb|EAS46383.1| Holliday junction DNA helicase RuvB [marine gamma proteobacterium
           HTCC2207]
          Length = 330

 Score =  369 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 183/319 (57%), Positives = 236/319 (73%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E+     LRP +L+++ GQ      L +FIEAA+ R+E LDH L  GPPGLGKTTLA ++
Sbjct: 5   EERFDRALRPESLKDYVGQPVVVEQLSIFIEAARKRSEPLDHTLVFGPPGLGKTTLAHII 64

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A E+ V  ++TSGPV+ KAGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPAMED+QL
Sbjct: 65  ANEMQVALKTTSGPVLEKAGDLAALLTNLEPGDVLFIDEIHRLSPVVEEILYPAMEDYQL 124

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D+++GEGP+ARS+K++L  FTL+ ATTR GLLT PL+DRFGI  RL FY   DL  IVQR
Sbjct: 125 DIVIGEGPAARSIKLDLPPFTLVGATTRAGLLTAPLRDRFGIVQRLEFYSETDLTHIVQR 184

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
              +  +++  + A EIA RSRGTPRIA RLLRRVRD+AEV    +I+ EIADAAL  LA
Sbjct: 185 AGAILNVSIDAKGAAEIARRSRGTPRIANRLLRRVRDYAEVKSDGSISAEIADAALNMLA 244

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D+ GFD  D R L  +   F GGPVG+++++A +SE R  IED++EPY+IQQG++ RT 
Sbjct: 245 VDQRGFDHQDRRLLLTLMEKFEGGPVGVDSLAAAMSEERGTIEDVLEPYLIQQGYLMRTS 304

Query: 315 RGRLLMPIAWQHLGIDIPH 333
           RGR+   +A+++ G+  P 
Sbjct: 305 RGRMATRMAYEYFGLQRPK 323


>gi|313672962|ref|YP_004051073.1| holliday junction DNA helicase ruvb [Calditerrivibrio nitroreducens
           DSM 19672]
 gi|312939718|gb|ADR18910.1| Holliday junction DNA helicase RuvB [Calditerrivibrio nitroreducens
           DSM 19672]
          Length = 347

 Score =  369 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 183/327 (55%), Positives = 243/327 (74%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
             + S+    ED   + +RP+   E+ GQ +   NLK+F+EAAK R E LDH LF GPPG
Sbjct: 3   NDIFSKEKLGEDVINNHIRPKRFSEYVGQKKIIENLKIFVEAAKLRNEPLDHTLFYGPPG 62

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLA +++ E+ VN +STSGPVI K GDLAA+LTNL + DVLFIDEIHRL   VEEI
Sbjct: 63  LGKTTLANIISNEMNVNIKSTSGPVIEKPGDLAAILTNLSEGDVLFIDEIHRLHSSVEEI 122

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPAMEDFQLD+++G+GPSAR++KI+L +FTL+ ATTR+GLLT+PL+DRFG+  +L+FY 
Sbjct: 123 LYPAMEDFQLDIVIGQGPSARTIKIDLPKFTLVGATTRIGLLTSPLRDRFGMVFKLDFYS 182

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            E+L +I++RG+ +    + + AA EIA RSRGTPRIA R+LRRVRDFA+V +   I+ +
Sbjct: 183 EEELISIIKRGSTILNCTIDESAAVEIAKRSRGTPRIAHRILRRVRDFAQVMNNGYISID 242

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           IA   L RL ID+ G D+ D  YL  I   + GGPVG++T+SA LSE RD +ED+ EPY+
Sbjct: 243 IAKLGLERLEIDEQGLDKADRAYLNTIIEKYDGGPVGLDTLSATLSEERDTLEDVTEPYL 302

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           I +GFI++TPRGR+   +A++HL I  
Sbjct: 303 IFRGFIKKTPRGRIATKLAYEHLRIKY 329


>gi|313608654|gb|EFR84501.1| holliday junction DNA helicase RuvB [Listeria monocytogenes FSL
           F2-208]
          Length = 335

 Score =  369 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 181/331 (54%), Positives = 233/331 (70%), Gaps = 1/331 (0%)

Query: 2   MDREGLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD   + S  V  E+ +  + LRP+TL ++ GQ +  +NL VFIEAA  R EALDHVL  
Sbjct: 1   MDERIISSETVDAEEVSFETSLRPQTLSQYIGQDKVKNNLTVFIEAATLRNEALDHVLLY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA V+A E+G   ++TSGP I + GDLA +LT+LE  DVLFIDEIHRLS  
Sbjct: 61  GPPGLGKTTLAMVIASEMGSQIKTTSGPAIERPGDLATILTSLEPGDVLFIDEIHRLSRA 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EEILYPAMED+ LD+++G GP+ARSV+++L  FTLI ATTR GLL+ PL+DRFG+   L
Sbjct: 121 IEEILYPAMEDYCLDIVIGTGPTARSVRLDLPPFTLIGATTRAGLLSAPLRDRFGVIDHL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  E L  IV R + +    + D  A EIA RSRGTPRIA RLL+RVRDFA+V    T
Sbjct: 181 EFYTEEQLTEIVLRTSNILNTKIDDLGAREIARRSRGTPRIANRLLKRVRDFAQVRGNGT 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +T ++A  AL  L +D  G D +D + L  I ++F GGPVG++TI+A + E R+ IED+ 
Sbjct: 241 VTEKLAKEALTLLQVDPRGLDTIDQKLLHTIIQSFRGGPVGLDTIAASIGEERETIEDMQ 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           EPY++Q GF+QRTPRGR+    A+ HLGI  
Sbjct: 301 EPYLLQIGFLQRTPRGRIATETAYNHLGISY 331


>gi|294651066|ref|ZP_06728404.1| crossover junction crossover junction ATP-dependent DNA helicase
           RuvB [Acinetobacter haemolyticus ATCC 19194]
 gi|292823045|gb|EFF81910.1| crossover junction crossover junction ATP-dependent DNA helicase
           RuvB [Acinetobacter haemolyticus ATCC 19194]
          Length = 332

 Score =  369 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 182/330 (55%), Positives = 241/330 (73%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           ++ L+S     ED     +RP +L ++ GQ      +++FI AA+ R EALDH L  GPP
Sbjct: 2   QDRLISGTEKPEDHFDRAIRPTSLADYIGQPVVREQMEIFIGAARGRGEALDHTLIFGPP 61

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++ARE+G N +STSGPV+ +AGDLAA+LTNLE+ DVLFIDEIHRLS ++EE
Sbjct: 62  GLGKTTLANIIAREMGGNLKSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPVIEE 121

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILYPAMED+QLD+M+GEGP+ARS+K++L  FTL+AATTR GLLT+PL+DRFGI  RL FY
Sbjct: 122 ILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRLEFY 181

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            +EDL  IV R A L  + +T E + EIA R+RGTPRIA RLLRRVRD+A+V     +T+
Sbjct: 182 SVEDLTHIVTRSANLMDVPLTKEGSTEIARRARGTPRIANRLLRRVRDYAQVKGTGEVTQ 241

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           ++A  AL  L +DK G D LD RYL+M+   F G P G+E ++A ++E    +ED+IEPY
Sbjct: 242 DMAQRALDMLNVDKDGLDTLDRRYLSMLLERFEGRPTGVEALAAAMAEDSGTLEDVIEPY 301

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +IQQG++ RT RGR+   +A+   G+  P 
Sbjct: 302 LIQQGYVMRTARGRIATNMAYLQFGLTPPE 331


>gi|289434812|ref|YP_003464684.1| holliday junction DNA helicase RuvB [Listeria seeligeri serovar
           1/2b str. SLCC3954]
 gi|289171056|emb|CBH27598.1| holliday junction DNA helicase RuvB [Listeria seeligeri serovar
           1/2b str. SLCC3954]
 gi|313633142|gb|EFS00031.1| holliday junction DNA helicase RuvB [Listeria seeligeri FSL N1-067]
 gi|313637716|gb|EFS03085.1| holliday junction DNA helicase RuvB [Listeria seeligeri FSL S4-171]
          Length = 335

 Score =  369 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 180/331 (54%), Positives = 235/331 (70%), Gaps = 1/331 (0%)

Query: 2   MDREGLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD   + S  V  E+ +  + LRP+TL ++ GQ +  +NL VFIEAA  R EALDHVL  
Sbjct: 1   MDERIISSETVDSEEVSFETSLRPQTLSQYIGQDKVKNNLTVFIEAATLRNEALDHVLLY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA V+A E+G   ++TSGP I + GDLA +LT+L+  DVLFIDEIHRLS  
Sbjct: 61  GPPGLGKTTLAMVIASEMGSQIKTTSGPAIERPGDLATILTSLDPGDVLFIDEIHRLSRA 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EE+LYPAMED+ LD+++G GP+ARSV+++L  FTLI ATTR GLL+ PL+DRFG+   L
Sbjct: 121 IEEVLYPAMEDYCLDIVIGTGPTARSVRLDLPPFTLIGATTRAGLLSAPLRDRFGVIDHL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  E L  IV R A +    + D  A EIA RSRGTPRIA RLL+RVRDFA+V    T
Sbjct: 181 EFYTEEQLTEIVLRTANILDTKIDDLGAREIARRSRGTPRIANRLLKRVRDFAQVRGNGT 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +T ++A  AL  L +D  G D +D + L  I ++F GGPVG++TI+A + E R+ IED+ 
Sbjct: 241 VTEKLAKEALTLLQVDPRGLDTIDQKLLHTIIQSFRGGPVGLDTIAASIGEERETIEDMQ 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           EPY++Q GF+QR+PRGR+   IA++HLGI  
Sbjct: 301 EPYLLQIGFLQRSPRGRIATEIAYKHLGISY 331


>gi|90408540|ref|ZP_01216697.1| Holliday junction DNA helicase [Psychromonas sp. CNPT3]
 gi|90310359|gb|EAS38487.1| Holliday junction DNA helicase [Psychromonas sp. CNPT3]
          Length = 333

 Score =  369 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 184/333 (55%), Positives = 242/333 (72%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S     +D+ +   +RP+ L ++ GQ +  + +++FIEAA+ R EALDH+L 
Sbjct: 1   MIEEDRLISAVEKNDDSFVDRAIRPKLLSDYEGQPQVNTQMEIFIEAARQRGEALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA EL VN ++TSGP++ KAGDLAALLTNLE+ DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLAHIVANELKVNIKTTSGPILEKAGDLAALLTNLEENDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPAFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +YE+  L  IV R +K   L +    A EIA RSRGTPRIA RLLRRVRD+A+V    
Sbjct: 181 LEYYELIPLTKIVMRSSKHFNLNLDMSGATEIAKRSRGTPRIANRLLRRVRDYAQVKKES 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I   +A+ AL  L +D  GFD +D + L  I   F GGPVG++ ++A + E ++ IED+
Sbjct: 241 MINANVANKALDMLNVDGQGFDYMDRKLLLAILDTFQGGPVGLDNLAAAIGEEKETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           +EPY+IQQGF+QRTPRGR+     +QH G   P
Sbjct: 301 LEPYLIQQGFLQRTPRGRIATSRTYQHFGFSTP 333


>gi|237746840|ref|ZP_04577320.1| holliday junction DNA helicase B [Oxalobacter formigenes HOxBLS]
 gi|229378191|gb|EEO28282.1| holliday junction DNA helicase B [Oxalobacter formigenes HOxBLS]
          Length = 354

 Score =  369 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 187/324 (57%), Positives = 239/324 (73%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           S     E+A    LRP+ L E+ GQ +    L++FI AA+ R EALDH L  GPPGLGKT
Sbjct: 17  SPASPNEEAVERALRPKYLSEYVGQHKTREQLEIFIAAARKRQEALDHTLLFGPPGLGKT 76

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           TLA ++ARE+GVN R TSGPV+ + GDLAA+LTNLE  DVLFIDEIHR+S +VEEILYPA
Sbjct: 77  TLAHIIAREMGVNLRQTSGPVLERPGDLAAILTNLEANDVLFIDEIHRMSPVVEEILYPA 136

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +ED+Q+D+++GEGP+ARSVK++L  FTLI ATTR G+LTNPL+DRFG+  RL FY+I+DL
Sbjct: 137 LEDYQIDILIGEGPAARSVKLDLQPFTLIGATTRAGMLTNPLRDRFGVVARLEFYDIDDL 196

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             IV R A L    + ++ A EIA R+RGTPRIA RLLRRVRD+AEV     ITRE+ADA
Sbjct: 197 TRIVTRSAMLLKAPIVEDGAREIARRARGTPRIANRLLRRVRDYAEVKGTGEITREMADA 256

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL  L +D +GFD +D + L  +   F GGPVGI  ++A + E  D IED++EPY+IQQG
Sbjct: 257 ALKMLDVDPVGFDLMDRKLLEAVLFKFSGGPVGIANLAAAIGEEVDTIEDVLEPYLIQQG 316

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIP 332
           ++QRTPRGR+     ++H G+  P
Sbjct: 317 YLQRTPRGRIATTATYRHFGVVAP 340


>gi|170747185|ref|YP_001753445.1| Holliday junction DNA helicase RuvB [Methylobacterium radiotolerans
           JCM 2831]
 gi|170653707|gb|ACB22762.1| Holliday junction DNA helicase RuvB [Methylobacterium radiotolerans
           JCM 2831]
          Length = 351

 Score =  368 bits (945), Expect = e-100,   Method: Composition-based stats.
 Identities = 230/328 (70%), Positives = 271/328 (82%), Gaps = 1/328 (0%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           LL+     +D D   +RP +L EF GQ  A +N++VFIEAAK   +ALDHVLFVGPPGLG
Sbjct: 11  LLTPEKRTDDVD-QTIRPLSLSEFIGQRAARANMQVFIEAAKKTGQALDHVLFVGPPGLG 69

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTTLAQ+VARELGVNFRSTSGPVIAKAGDLAA LTNLE+RDVLFIDEIHRL+  VEEILY
Sbjct: 70  KTTLAQIVARELGVNFRSTSGPVIAKAGDLAAQLTNLEERDVLFIDEIHRLNPAVEEILY 129

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           PAMED+QLDL++GEGP+ARSVKI L +FTL+ ATTR GLLT PL+DRFGIPIRL FYEI+
Sbjct: 130 PAMEDYQLDLIIGEGPAARSVKIELPKFTLVGATTRAGLLTTPLRDRFGIPIRLEFYEID 189

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +L+ IV RGA++ GL ++ E A EIA R+RGTPRIAGRLLRRVRDFA VA A+T+TR IA
Sbjct: 190 ELEQIVARGARVLGLGMSAEGANEIARRARGTPRIAGRLLRRVRDFAVVAEAETVTRAIA 249

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           D AL  L +D  G D +D +YL++IAR FGGGPVGIETI A LSEPRDAIED+IEPY+IQ
Sbjct: 250 DRALQLLDVDGAGLDVMDRKYLSLIARAFGGGPVGIETIGAALSEPRDAIEDIIEPYLIQ 309

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           +GF+QRTPRGR+L   A++H+ I  P R
Sbjct: 310 RGFVQRTPRGRVLTRHAYRHMQIPEPTR 337


>gi|332982455|ref|YP_004463896.1| Holliday junction DNA helicase subunit RuvB [Mahella australiensis
           50-1 BON]
 gi|332700133|gb|AEE97074.1| Holliday junction DNA helicase subunit RuvB [Mahella australiensis
           50-1 BON]
          Length = 333

 Score =  368 bits (945), Expect = e-100,   Method: Composition-based stats.
 Identities = 182/332 (54%), Positives = 246/332 (74%), Gaps = 1/332 (0%)

Query: 4   REGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
            + +++  ++Q D ++   LRPRTL E+ GQ      L++FI+AAK R EALDHVL  GP
Sbjct: 2   SDRIIAAELAQNDIELETALRPRTLSEYIGQNSVKEKLRIFIDAAKQRHEALDHVLLYGP 61

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++A E+GVN R TSGPVI +AGDLAA+LTN+ + DVLFIDEIHRL+  VE
Sbjct: 62  PGLGKTTLANIIANEMGVNIRITSGPVIERAGDLAAILTNMAEYDVLFIDEIHRLNRAVE 121

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILYPAMED+ LD+++G+GP ARS++I+L  FTLI ATTR GLLT PL+DRFG+  RL  
Sbjct: 122 EILYPAMEDYALDIVIGKGPGARSLRIDLPHFTLIGATTRAGLLTPPLRDRFGVINRLEM 181

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y I +LK IV R A L  + + +  ACEIA R+RGTPR+A RLL+RVRD+A++     IT
Sbjct: 182 YAINELKEIVIRSAYLLKVGIDERGACEIARRARGTPRVANRLLKRVRDYAQIKADGIIT 241

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            ++A A L  L +D++G D++D + L+++   FGGGPVG++T+SA ++E  D IED+ EP
Sbjct: 242 YDVAKAGLDLLEVDELGLDEVDRKMLSIMIDKFGGGPVGLDTLSAAVNEQADTIEDVYEP 301

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           Y++Q GFI RTPRGR+   +A++H+GI    R
Sbjct: 302 YLLQLGFIDRTPRGRIATRLAYEHMGIPFEDR 333


>gi|94971570|ref|YP_593618.1| Holliday junction DNA helicase RuvB [Candidatus Koribacter
           versatilis Ellin345]
 gi|123381145|sp|Q1IHV6|RUVB_ACIBL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|94553620|gb|ABF43544.1| Holliday junction DNA helicase subunit RuvB [Candidatus Koribacter
           versatilis Ellin345]
          Length = 360

 Score =  368 bits (945), Expect = e-100,   Method: Composition-based stats.
 Identities = 172/332 (51%), Positives = 237/332 (71%), Gaps = 1/332 (0%)

Query: 4   REGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           RE L+S    ++D+   L LRP+ L EF GQ +   NL V IEAA++R EALDHVL  GP
Sbjct: 24  RERLVSAIPVEDDSSFELKLRPQWLREFIGQPKVKENLAVAIEAARSRGEALDHVLLYGP 83

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++A E+   F+ TSGP +   GDL A+LTN+ D+ VLFIDE+HRL   +E
Sbjct: 84  PGLGKTTLANIIANEMQAQFQQTSGPTLQIKGDLTAILTNVRDKQVLFIDEVHRLQPALE 143

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LY A+ED++LD+++G+GPSAR+  I+++ FTL+AATTR GLL+ PL+ RFGI +RL F
Sbjct: 144 ELLYSAVEDYKLDIIIGQGPSARTHTIDVAPFTLVAATTRAGLLSAPLRSRFGIVLRLEF 203

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  EDLK I++R A++  + + +  A EIA R RGTPRIA RLLRRVRD+A+V  A  I 
Sbjct: 204 YTTEDLKIILKRSAEILNVEIDEGGAAEIATRCRGTPRIANRLLRRVRDYAQVRGAGKID 263

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           RE A  AL  L +D+ GFD++D R +  I   + GGPVG+ T++A L+E  DAIE++ EP
Sbjct: 264 RETAQKALEMLEVDQHGFDEVDRRLMLTIIEKYQGGPVGLNTLAASLAEETDAIEEIYEP 323

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           ++IQ GF+ RTPRGR+   +A+++  +  P +
Sbjct: 324 FLIQLGFLDRTPRGRVATHLAYEYFKMKPPKK 355


>gi|312127828|ref|YP_003992702.1| holliday junction DNA helicase ruvb [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777847|gb|ADQ07333.1| Holliday junction DNA helicase RuvB [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 338

 Score =  368 bits (945), Expect = e-100,   Method: Composition-based stats.
 Identities = 169/323 (52%), Positives = 228/323 (70%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           E LL    S ED     LRP+TLE++ GQ +    +K+FIEAAK R E LDHVL  GPPG
Sbjct: 2   ERLLDNKFSIEDVHEESLRPKTLEDYIGQQKVKEKIKIFIEAAKKRKEPLDHVLLYGPPG 61

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLA ++A E+GV+ + TSGP I +AGDL A+LTN+ + ++LFIDEIHRL+  +EE+
Sbjct: 62  LGKTTLANIIANEMGVDIKVTSGPAIERAGDLVAILTNIGENNILFIDEIHRLNRTIEEV 121

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPAMED ++D+++G+GPSA+++++ L  FTLI ATTR GLL++PL+DRFGI  RL++Y 
Sbjct: 122 LYPAMEDKKVDIVIGKGPSAKTIRLTLPPFTLIGATTRAGLLSSPLRDRFGIIERLDYYT 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +E+L  IV R A +    +  EA  EIA RSRGTPR+A RLLRR+RD+A V H  +IT E
Sbjct: 182 VEELSQIVMRSASILKCDIEKEACIEIAKRSRGTPRVANRLLRRLRDYAMVKHTGSITYE 241

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +A + L    +D+ G D +D   L  I   FGGGPVG+ TI+A + E    IED+ EPY+
Sbjct: 242 VAKSGLEMFEVDEYGLDLVDRNILEAIVYKFGGGPVGLSTIAAAIGEDEGTIEDIYEPYL 301

Query: 305 IQQGFIQRTPRGRLLMPIAWQHL 327
           IQ+GF+ +T RGR+    A  H+
Sbjct: 302 IQEGFLVKTARGRVATQKAINHI 324


>gi|126733599|ref|ZP_01749346.1| Holliday junction DNA helicase RuvB [Roseobacter sp. CCS2]
 gi|126716465|gb|EBA13329.1| Holliday junction DNA helicase RuvB [Roseobacter sp. CCS2]
          Length = 339

 Score =  368 bits (945), Expect = e-100,   Method: Composition-based stats.
 Identities = 214/333 (64%), Positives = 260/333 (78%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M   +  L      EDAD   LRP+TL+ F GQ  A +NL VFIE+A+ R EA+DH LF 
Sbjct: 1   MDQPDPTLRPEPQPEDAD-RALRPQTLDAFIGQQAARANLSVFIESARRRGEAMDHTLFH 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++ARELGVNFR TSGPV+AKAGDLAA+LTNLE RDVLFIDEIHRL+  
Sbjct: 60  GPPGLGKTTLAQIMARELGVNFRMTSGPVLAKAGDLAAILTNLEARDVLFIDEIHRLNPA 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPA+EDF+LDL++GEGP+AR+V+I L  FTL+ ATTR+GLLT PL+DRFGIP RL
Sbjct: 120 VEEVLYPALEDFELDLVIGEGPAARTVRIELQPFTLVGATTRMGLLTTPLRDRFGIPTRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  ++L  IV RGA+L G   + E A EIA R+RGTPRIAGRLLRRV DFA V    T
Sbjct: 180 EFYTEDELHEIVTRGARLMGAPASPEGAREIARRARGTPRIAGRLLRRVVDFAIVEGDGT 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +T++IAD AL RL +D +G D  D RYL +IA ++GGGPVG+ET+SA LSE RD++ED+I
Sbjct: 240 VTQQIADRALTRLGVDHLGLDNADRRYLRLIAESYGGGPVGVETLSAALSESRDSLEDVI 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY++Q+G IQRTPRGR+L   AW HLG+D P 
Sbjct: 300 EPYLLQKGLIQRTPRGRMLAQAAWAHLGLDAPK 332


>gi|299535651|ref|ZP_07048972.1| Holliday junction DNA helicase RuvB [Lysinibacillus fusiformis ZC1]
 gi|298728851|gb|EFI69405.1| Holliday junction DNA helicase RuvB [Lysinibacillus fusiformis ZC1]
          Length = 334

 Score =  368 bits (945), Expect = e-100,   Method: Composition-based stats.
 Identities = 173/333 (51%), Positives = 230/333 (69%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M    + S   S ++     LRP+ L ++ GQ +   NL++FIEAAK R E+LDHVL  G
Sbjct: 1   MSERMMASEAGSYDEQFELSLRPQKLAQYIGQHKVKENLQIFIEAAKLRQESLDHVLLYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA V+A E+ VN R TSGP I + GDLAA+L++LE  DVLFIDEIHRL   +
Sbjct: 61  PPGLGKTTLAAVIANEMNVNVRMTSGPAIERPGDLAAILSSLEPGDVLFIDEIHRLPRAI 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMEDF LD++VG+GP ARSV+++L  FTL+ ATTR G L+ PL+DRFG+ +RL 
Sbjct: 121 EEVLYPAMEDFCLDIVVGKGPEARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLLRLE 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y+   L  IV R A L  + +   AA E+A RSRGTPRIA RLL+RVRD+A+V     I
Sbjct: 181 YYDDRSLAEIVVRSAHLFEVEIEQVAAMEMARRSRGTPRIANRLLKRVRDYAQVLGDGMI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T  +A  AL  L +D  G D +D + +T +   F GGPVG++T++A + E R  IED+ E
Sbjct: 241 TEGLAQQALELLQVDPRGLDHIDHKLVTNMIERFRGGPVGLDTLAASIGEERVTIEDVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           PY++Q G IQRTPRGR+   +A++H G + P +
Sbjct: 301 PYLMQIGLIQRTPRGRVATHLAYEHFGYEYPQQ 333


>gi|281424884|ref|ZP_06255797.1| holliday junction DNA helicase RuvB [Prevotella oris F0302]
 gi|299142290|ref|ZP_07035423.1| holliday junction DNA helicase RuvB [Prevotella oris C735]
 gi|281401002|gb|EFB31833.1| holliday junction DNA helicase RuvB [Prevotella oris F0302]
 gi|298576379|gb|EFI48252.1| holliday junction DNA helicase RuvB [Prevotella oris C735]
          Length = 344

 Score =  368 bits (945), Expect = e-100,   Method: Composition-based stats.
 Identities = 177/332 (53%), Positives = 235/332 (70%), Gaps = 1/332 (0%)

Query: 1   MMDREGLLSRNVSQEDAD-ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M +   +    +S E+ D  + LRP    +F GQ +   NL++F+EAAK R E LDH L 
Sbjct: 1   MTEDFDIREERLSTEEKDFENALRPLRFADFNGQKKVVENLEIFVEAAKYRGEPLDHTLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTL+ ++A ELGV F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS 
Sbjct: 61  YGPPGLGKTTLSNIIANELGVGFKITSGPVLDKPGDLAGILTSLEPNDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE LY AMED+++D+M+ +GPSARS++I+L+ FTL+ ATTR G+LT PL+ RFGI + 
Sbjct: 121 VVEEYLYSAMEDYRIDIMIDKGPSARSIQIDLNPFTLVGATTRSGMLTAPLRARFGINMH 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y+ E LK I++R A L  + + DEAA EI+ RSRGTPRIA  LLRRVRDFA+V    
Sbjct: 181 LEYYDPETLKRIIRRSAMLLKVPIDDEAAIEISRRSRGTPRIANALLRRVRDFAQVKGNG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           TIT EIA   L  L ID+ G D++D + L  I   F GGPVG+ TI+  + E    +ED+
Sbjct: 241 TITNEIAHIGLQSLNIDQYGLDEIDNKILLTIIDKFRGGPVGVSTIATAIGEDAGTVEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
            EP++I +GFI+RTPRGR+  P+A++HLG + 
Sbjct: 301 YEPFLIMEGFIKRTPRGRMATPLAYEHLGRNP 332


>gi|16800635|ref|NP_470903.1| Holliday junction DNA helicase RuvB [Listeria innocua Clip11262]
 gi|20140101|sp|Q92BI2|RUVB_LISIN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|16414054|emb|CAC96798.1| ruvB [Listeria innocua Clip11262]
 gi|313618793|gb|EFR90689.1| holliday junction DNA helicase RuvB [Listeria innocua FSL S4-378]
          Length = 335

 Score =  368 bits (945), Expect = e-100,   Method: Composition-based stats.
 Identities = 181/331 (54%), Positives = 233/331 (70%), Gaps = 1/331 (0%)

Query: 2   MDREGLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD   + S  V  E+ +  + LRP+TL ++ GQ +  +NL VFIEAA  R EALDHVL  
Sbjct: 1   MDERIISSETVDAEEVSFETSLRPQTLSQYIGQDKVKNNLTVFIEAATLRNEALDHVLLY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA V+A E+G   ++TSGP I + GDLA +LT+LE  DVLFIDEIHRLS  
Sbjct: 61  GPPGLGKTTLAMVIASEMGSEIKTTSGPAIERPGDLATILTSLEPGDVLFIDEIHRLSRA 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EEILYPAMED+ LD+++G GP+ARSV+++L  FTLI ATTR GLL+ PL+DRFG+   L
Sbjct: 121 IEEILYPAMEDYCLDIVIGTGPTARSVRLDLPPFTLIGATTRAGLLSAPLRDRFGVIDHL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  E L  IV R + +    + D  A EIA RSRGTPRIA RLL+RVRDFA+V    T
Sbjct: 181 EFYTEEQLTEIVLRTSGILDTKIDDLGAREIARRSRGTPRIANRLLKRVRDFAQVRGNGT 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +T ++A  AL  L +D  G D +D + L  I ++F GGPVG++TI+A + E R+ IED+ 
Sbjct: 241 VTEKLAKEALTLLQVDPRGLDTIDQKLLHTIIQSFRGGPVGLDTIAASIGEERETIEDMQ 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           EPY++Q GF+QRTPRGR+    A+ HLGI  
Sbjct: 301 EPYLLQIGFLQRTPRGRIATETAYNHLGISY 331


>gi|89099001|ref|ZP_01171881.1| Holliday junction DNA helicase B [Bacillus sp. NRRL B-14911]
 gi|89086405|gb|EAR65526.1| Holliday junction DNA helicase B [Bacillus sp. NRRL B-14911]
          Length = 333

 Score =  368 bits (945), Expect = e-100,   Method: Composition-based stats.
 Identities = 174/332 (52%), Positives = 232/332 (69%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M+   +      Q+ +    LRP+TL ++ GQ +   NL+VFI+AA+ R E LDHVL  G
Sbjct: 1   MEDRIISGEADLQDVSFEQSLRPQTLRQYIGQDKVKENLEVFIQAARIRGETLDHVLLYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+GVN R+T+GP I + GDLAA+LT LE  DVLFIDEIHRL   +
Sbjct: 61  PPGLGKTTLASIIANEMGVNLRTTAGPAIERPGDLAAILTALEPGDVLFIDEIHRLPRSI 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTR G ++ PL+DRFG+  RL 
Sbjct: 121 EEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGSVSAPLRDRFGVLCRLE 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y    LK IV R A +    + D AA EIA RSRGTPRIA RLLRRVRDFA+V    +I
Sbjct: 181 YYNESQLKNIVSRTADVLETGIDDLAASEIARRSRGTPRIANRLLRRVRDFAQVKGDGSI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
              +A  +L  L +D++G D +D + L  I   F GGPVG+ETI+A + E    IED+ E
Sbjct: 241 DAALAHDSLELLQVDRLGLDHIDHKLLRGIIEKFRGGPVGLETIAATIGEESHTIEDVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           PY++Q GF+QRTPRGR++  + + HL +++P 
Sbjct: 301 PYLLQIGFLQRTPRGRIVTHLVYHHLNLELPE 332


>gi|325286769|ref|YP_004262559.1| Holliday junction ATP-dependent DNA helicase ruvB [Cellulophaga
           lytica DSM 7489]
 gi|324322223|gb|ADY29688.1| Holliday junction ATP-dependent DNA helicase ruvB [Cellulophaga
           lytica DSM 7489]
          Length = 340

 Score =  368 bits (944), Expect = e-100,   Method: Composition-based stats.
 Identities = 186/329 (56%), Positives = 232/329 (70%), Gaps = 1/329 (0%)

Query: 1   MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M +     S N S E+ DI   LRP + ++F GQ +   NLKVF+EAA  R EALDH LF
Sbjct: 1   MNENLDPTSENFSSEEFDIERALRPLSFDDFAGQDQVLENLKVFVEAANQRGEALDHTLF 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A ELGV  + TSGPV+ K GDLA LLTNLE+RDVLFIDEIHRLS 
Sbjct: 61  HGPPGLGKTTLAHILANELGVGIKVTSGPVLDKPGDLAGLLTNLEERDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           IVEE LY AMED+++D+M+  GP+ARSV+INL+ FTLI ATTR GLLT P++ RFGI  R
Sbjct: 121 IVEEYLYSAMEDYKIDIMIESGPNARSVQINLNPFTLIGATTRSGLLTAPMRARFGIQSR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y  E L TI +R A +  + +  EAA EIA RSRGTPRI   LLRRVRDFA++    
Sbjct: 181 LQYYTTELLSTIAERSADILNVPIDLEAAIEIAGRSRGTPRICNALLRRVRDFAQIKGNG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  EI+   L  L +D  G D++D + LT I   F GGPVGI T++  +SE  + IE++
Sbjct: 241 KIDIEISRFGLNALNVDAHGLDEMDNKILTTIIDKFKGGPVGITTLATAVSESAETIEEV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
            EP++IQQGFI RTPRGR +  +A++HLG
Sbjct: 301 YEPFLIQQGFIMRTPRGREVTELAYKHLG 329


>gi|294010087|ref|YP_003543547.1| Holliday junction resolvasome helicase subunit [Sphingobium
           japonicum UT26S]
 gi|292673417|dbj|BAI94935.1| Holliday junction resolvasome helicase subunit [Sphingobium
           japonicum UT26S]
          Length = 339

 Score =  368 bits (944), Expect = e-100,   Method: Composition-based stats.
 Identities = 217/331 (65%), Positives = 265/331 (80%), Gaps = 1/331 (0%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M  + L+S     EDAD + LRP++L EF GQ  A  NL++FIEAAK R EALDHVLF G
Sbjct: 1   MSEDRLISSTRRVEDAD-AALRPKSLAEFIGQQAARENLRIFIEAAKGRGEALDHVLFFG 59

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLAQ+VARE+GV FR+TSGPVIAK+GDLAALLTNL++ DVLF+DEIHRL+  V
Sbjct: 60  PPGLGKTTLAQIVAREMGVGFRATSGPVIAKSGDLAALLTNLDEGDVLFVDEIHRLNPAV 119

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMED  LDLM+GEGPSARSV+I+L  FTL+ ATTR GLLT PL+DRFGIP+RL 
Sbjct: 120 EEVLYPAMEDRALDLMIGEGPSARSVRIDLPPFTLVGATTRQGLLTTPLRDRFGIPVRLQ 179

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY +++L+ +V+R A+L  LA+T + A EIA RSRGTPRIAGRLLRRVRDFA VA A  +
Sbjct: 180 FYTVDELELVVRRAARLLDLAITSDGAVEIARRSRGTPRIAGRLLRRVRDFANVAGAAAV 239

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
             ++ADAAL RL +D +G D +D RYLTMIA  + GGPVG+ET++AGLSE RD IE++IE
Sbjct: 240 DAKVADAALTRLEVDHLGLDLMDRRYLTMIADIYRGGPVGVETLAAGLSEARDTIEEVIE 299

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           PY+IQ G I RT RGR L  + W+HLG++ P
Sbjct: 300 PYLIQLGLIARTARGRCLNALGWKHLGLNPP 330


>gi|296535991|ref|ZP_06898135.1| crossover junction ATP-dependent DNA helicase RuvB [Roseomonas
           cervicalis ATCC 49957]
 gi|296263677|gb|EFH10158.1| crossover junction ATP-dependent DNA helicase RuvB [Roseomonas
           cervicalis ATCC 49957]
          Length = 342

 Score =  368 bits (944), Expect = e-100,   Method: Composition-based stats.
 Identities = 205/329 (62%), Positives = 259/329 (78%), Gaps = 1/329 (0%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
            + +   + S+EDA  + LRP+TL++FTGQ     NL +FI+AA+ R EALDHVL  GPP
Sbjct: 2   SDRISDPHRSEEDAAEATLRPQTLDDFTGQKALRENLAIFIQAARTRGEALDHVLLHGPP 61

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLAQ+VARE+GV FR+TSGPV+ +AGDLAA+LTNL+ RDVLF+DEIHRL   +EE
Sbjct: 62  GLGKTTLAQIVAREMGVGFRATSGPVLQRAGDLAAILTNLQPRDVLFVDEIHRLQPALEE 121

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
            LYPAMEDFQLDL++GEGP+AR+V+I+L  FTL+ ATTR GLL  PL+DRFGIP+RL FY
Sbjct: 122 TLYPAMEDFQLDLIIGEGPAARTVRIDLPPFTLVGATTRAGLLATPLRDRFGIPLRLQFY 181

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
             E+L  IV+RGA+  G A+T+E A EIA RSRGTPRIAGRLLRRVRDFA V+  K   R
Sbjct: 182 TPEELLLIVRRGAQKLGFALTEEGAAEIANRSRGTPRIAGRLLRRVRDFALVSG-KPADR 240

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
            +ADAAL RL +D  G D +D RYL  IA +  GGPVG+ET++A L+E RD +E+++EPY
Sbjct: 241 AMADAALNRLEVDGKGLDAMDRRYLRRIAEHHHGGPVGVETLAAALAEGRDTLEEVVEPY 300

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           +IQ+GF+ RTPRGR+L  +AW+HLG+  P
Sbjct: 301 LIQEGFVLRTPRGRVLGDLAWRHLGMSPP 329


>gi|83950116|ref|ZP_00958849.1| Holliday junction DNA helicase RuvB [Roseovarius nubinhibens ISM]
 gi|83838015|gb|EAP77311.1| Holliday junction DNA helicase RuvB [Roseovarius nubinhibens ISM]
          Length = 342

 Score =  368 bits (944), Expect = e-100,   Method: Composition-based stats.
 Identities = 207/332 (62%), Positives = 252/332 (75%), Gaps = 1/332 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M + +  L      ED D   LRP+ LE+F GQ EA SNL++FI++A+ R EA+DH LF 
Sbjct: 1   MSEPDPTLRPEPMAEDFD-RALRPQALEDFIGQAEARSNLRIFIQSARQRGEAMDHTLFH 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++ARELGV FR TSGPV+AKAGDLAA+LTNLE RDVLFIDEIHRL+  
Sbjct: 60  GPPGLGKTTLAQIMARELGVGFRMTSGPVLAKAGDLAAILTNLEARDVLFIDEIHRLNPA 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPA+EDF+LDL++GEGP+AR+V+I L  FTL+ ATTR+GLLT PL+DRFGIP RL
Sbjct: 120 VEEVLYPALEDFELDLVIGEGPAARTVRIELQPFTLVGATTRLGLLTTPLRDRFGIPTRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY +E+L  IV R A    +    + A EIA RSRGTPRIAGRLLRRV DFA V     
Sbjct: 180 QFYTVEELNEIVWRNADKLKVPAERDGAMEIARRSRGTPRIAGRLLRRVVDFAVVEGDGK 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           IT+ +AD AL RL +D +G D  D RYL +IA  + GGPVGIET+SA LSE RDA+E++I
Sbjct: 240 ITKALADNALTRLGVDHLGLDGADRRYLRLIAEAYQGGPVGIETLSAALSESRDALEEVI 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EP+++QQG IQRTPRGR+L    W HLG+  P
Sbjct: 300 EPFLLQQGLIQRTPRGRMLAQGGWTHLGLAPP 331


>gi|227518047|ref|ZP_03948096.1| Holliday junction DNA helicase B [Enterococcus faecalis TX0104]
 gi|256855045|ref|ZP_05560406.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis T8]
 gi|307291532|ref|ZP_07571409.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX0411]
 gi|227074483|gb|EEI12446.1| Holliday junction DNA helicase B [Enterococcus faecalis TX0104]
 gi|256709558|gb|EEU24605.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis T8]
 gi|306497397|gb|EFM66937.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX0411]
 gi|315026741|gb|EFT38673.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX2137]
 gi|315028753|gb|EFT40685.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX4000]
          Length = 338

 Score =  368 bits (944), Expect = e-100,   Method: Composition-based stats.
 Identities = 175/332 (52%), Positives = 225/332 (67%), Gaps = 1/332 (0%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M + E LLS    + +A I   LRP+ L ++ GQ +    L ++IEAAK R EALDH L 
Sbjct: 1   MTEEERLLSAASQEAEASIEKSLRPQFLAQYIGQDKVKQELTIYIEAAKNRNEALDHTLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTT+A V+A E+ VN R+TSGP I +AGDL A+L  LE  DVLFIDEIHRL  
Sbjct: 61  YGPPGLGKTTMAMVIANEMNVNIRTTSGPAIERAGDLVAILNELEPGDVLFIDEIHRLPR 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LY AMEDF +D+MVG+G +A  V   L  FTL+ ATTR G+L+ PL+DRFGI   
Sbjct: 121 VVEEMLYSAMEDFYIDIMVGQGTTAHPVHFPLPPFTLVGATTRAGMLSAPLRDRFGIISH 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           + +Y+ +DLK IV R A +    + +E A EIA RSRGTPRIA RLL+RVRDFA+V    
Sbjct: 181 MEYYQEQDLKEIVLRSADIFQTEIFEEGAFEIARRSRGTPRIANRLLKRVRDFAQVQSDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I R IAD AL  L +D  G D +D + L  +   +GGGPVG+ T+S  + E  + +ED+
Sbjct: 241 KIDRAIADKALTLLQVDHQGLDYVDQKLLKTMIDLYGGGPVGLSTLSVNIGEETETVEDM 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
            EPY+IQ+GFI+RTPRGR+  P A+ H G D 
Sbjct: 301 YEPYLIQKGFIKRTPRGRIATPFAYAHFGYDY 332


>gi|255264190|ref|ZP_05343532.1| holliday junction DNA helicase RuvB [Thalassiobium sp. R2A62]
 gi|255106525|gb|EET49199.1| holliday junction DNA helicase RuvB [Thalassiobium sp. R2A62]
          Length = 339

 Score =  368 bits (944), Expect = e-100,   Method: Composition-based stats.
 Identities = 211/333 (63%), Positives = 261/333 (78%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M   +  L  +    D D   LRP+ L+EF GQ EA +NLK+FI++A+ R EA+DH LF 
Sbjct: 1   MDQPDPDLRPDQQSGDND-RALRPQVLDEFIGQAEARANLKIFIQSARKREEAMDHTLFH 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++ARELGVNFR TSGPV+AKAGDLAA+LTNLE +DVLFIDEIHRL+  
Sbjct: 60  GPPGLGKTTLAQIMARELGVNFRMTSGPVLAKAGDLAAILTNLEAQDVLFIDEIHRLNPA 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPA+EDF+LDL++GEGP+AR+V+I L  FTL+ ATTR+GLLT PL+DRFGIP RL
Sbjct: 120 VEEVLYPALEDFELDLVIGEGPAARTVRIELQPFTLVGATTRMGLLTTPLRDRFGIPTRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           +FY  ++L  IV RGA+L G    DE A EIA R+RGTPRIAGRLLRRV DFA V     
Sbjct: 180 HFYTTDELHEIVTRGARLMGCPADDEGAREIAKRARGTPRIAGRLLRRVVDFAVVEGDGR 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +T+ IAD AL RL +D +G D  D RYL ++A N+GGGPVGIET+SA LSE RD++E++I
Sbjct: 240 VTQAIADRALTRLGVDHLGLDGADRRYLRLVAENYGGGPVGIETLSAALSESRDSLEEVI 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EP+++QQG IQRTPRGR+L   AW HLG+D+P 
Sbjct: 300 EPFLLQQGLIQRTPRGRMLAQKAWTHLGLDVPK 332


>gi|217964321|ref|YP_002349999.1| holliday junction DNA helicase RuvB [Listeria monocytogenes HCC23]
 gi|255023715|ref|ZP_05295701.1| Holliday junction DNA helicase RuvB [Listeria monocytogenes FSL
           J1-208]
 gi|254767430|sp|B8DHL6|RUVB_LISMH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|217333591|gb|ACK39385.1| holliday junction DNA helicase RuvB [Listeria monocytogenes HCC23]
 gi|307571113|emb|CAR84292.1| holliday junction DNA helicase [Listeria monocytogenes L99]
          Length = 335

 Score =  368 bits (944), Expect = e-100,   Method: Composition-based stats.
 Identities = 181/331 (54%), Positives = 233/331 (70%), Gaps = 1/331 (0%)

Query: 2   MDREGLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD   + S  V  E+ +  + LRP+TL ++ GQ +  +NL VFIEAA  R EALDHVL  
Sbjct: 1   MDERIISSETVDAEEVSFETSLRPQTLSQYIGQDKVKNNLTVFIEAATLRNEALDHVLLY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA V+A E+G   ++TSGP I + GDLA +LT+LE  DVLFIDEIHRLS  
Sbjct: 61  GPPGLGKTTLAMVIASEMGSQIKTTSGPAIERPGDLATILTSLEPGDVLFIDEIHRLSRA 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EEILYPAMED+ LD+++G GP+ARSV+++L  FTLI ATTR GLL+ PL+DRFG+   L
Sbjct: 121 IEEILYPAMEDYCLDIVIGTGPTARSVRLDLPPFTLIGATTRAGLLSAPLRDRFGVIDHL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  E L  IV R + +    + D  A EIA RSRGTPRIA RLL+RVRDFA+V    T
Sbjct: 181 EFYTEEQLTEIVLRTSNILDTKIDDLGAREIARRSRGTPRIANRLLKRVRDFAQVRGNGT 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +T ++A  AL  L +D  G D +D + L  I ++F GGPVG++TI+A + E R+ IED+ 
Sbjct: 241 VTEKLAKEALTLLQVDPRGLDTIDQKLLHTIIQSFRGGPVGLDTIAASIGEERETIEDMQ 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           EPY++Q GF+QRTPRGR+    A+ HLGI  
Sbjct: 301 EPYLLQIGFLQRTPRGRIATETAYNHLGISY 331


>gi|268318975|ref|YP_003292631.1| Holliday junction ATP-dependent DNA helicase ruvB [Lactobacillus
           johnsonii FI9785]
 gi|262397350|emb|CAX66364.1| Holliday junction ATP-dependent DNA helicase ruvB [Lactobacillus
           johnsonii FI9785]
          Length = 336

 Score =  368 bits (944), Expect = e-100,   Method: Composition-based stats.
 Identities = 175/332 (52%), Positives = 230/332 (69%), Gaps = 1/332 (0%)

Query: 1   MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M + E ++    S+ED  I L LRP+ L ++ GQ +  S +K++I+AAK R EALDHVL 
Sbjct: 1   MNEEERIIGAESSEEDETIELSLRPQLLAQYIGQDKVKSEMKIYIKAAKQRDEALDHVLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA V+A E+GV+ +STSGP I KAGDL ALL+ L   DVLFIDEIHRL+ 
Sbjct: 61  YGPPGLGKTTLAFVIANEMGVHLKSTSGPAIEKAGDLVALLSELNPGDVLFIDEIHRLAK 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEE+LY AMEDF +D++VGEG +  +V + L  FTLI ATTR G L+ PL+DRFGI   
Sbjct: 121 PVEEVLYSAMEDFYIDIVVGEGQTTHAVHVPLPPFTLIGATTRAGQLSAPLRDRFGIIEH 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           + +Y +EDL+ I+QR + +    +  EAA E+A RSRGTPR+A RLL+RVRDFAEV   +
Sbjct: 181 MQYYSVEDLEKIIQRSSVVFNTKIDPEAAIELARRSRGTPRVANRLLKRVRDFAEVKGEE 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I+      +L  L +D  G DQ D + L M+  N+GGGPVGI+TI+A + E  D IE++
Sbjct: 241 AISLVTTKHSLHLLEVDDEGLDQTDRKLLRMMIENYGGGPVGIKTIAANVGEDTDTIEEV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
            EPY++Q+GFI RTPRGR +   A+  LG   
Sbjct: 301 YEPYLLQKGFITRTPRGRSVTQKAYLQLGYPP 332


>gi|163733515|ref|ZP_02140958.1| Holliday junction DNA helicase B [Roseobacter litoralis Och 149]
 gi|161393303|gb|EDQ17629.1| Holliday junction DNA helicase B [Roseobacter litoralis Och 149]
          Length = 340

 Score =  367 bits (943), Expect = e-100,   Method: Composition-based stats.
 Identities = 208/333 (62%), Positives = 254/333 (76%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D +  +  +   ED D   LRP+ L+EF GQ +  +NLKVFI +A+ R EA+DH LF 
Sbjct: 1   MSDIDPTVRPDPLPEDHD-RALRPQVLDEFVGQADVRANLKVFIASARQRGEAMDHTLFH 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++ARELGV FR TSGPV+AKAGDLAA+LTNLE RDVLFIDEIHRL+  
Sbjct: 60  GPPGLGKTTLAQIMARELGVGFRMTSGPVLAKAGDLAAILTNLEKRDVLFIDEIHRLNPA 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPA+EDF+LDL++GEGP+AR+V+I L  FTL+ ATTR+GLLT PL+DRFGIP RL
Sbjct: 120 VEEVLYPALEDFELDLVIGEGPAARTVRIELQPFTLVGATTRMGLLTTPLRDRFGIPTRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  ++L  IV+R A+  G       A EIA R+RGTPRIAGRLLRRV DFA V     
Sbjct: 180 QFYTEDELFIIVERNARKLGAPADQGGAREIARRARGTPRIAGRLLRRVVDFAVVEGDGR 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +TRE+AD AL RL +D +G D  D RYL +IA N+ GGPVGIET+SA LSE RDA+E++I
Sbjct: 240 VTRELADMALNRLGVDHLGLDGADRRYLRLIAENYAGGPVGIETMSAALSESRDALEEVI 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EP+++QQG IQRTPRGR+L    W HLG+D P 
Sbjct: 300 EPFLLQQGLIQRTPRGRMLAQKGWTHLGLDAPR 332


>gi|51892299|ref|YP_074990.1| Holliday junction DNA helicase RuvB [Symbiobacterium thermophilum
           IAM 14863]
 gi|68715427|sp|Q67Q97|RUVB_SYMTH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|51855988|dbj|BAD40146.1| Holliday junction DNA helicase RuvB [Symbiobacterium thermophilum
           IAM 14863]
          Length = 347

 Score =  367 bits (943), Expect = e-100,   Method: Composition-based stats.
 Identities = 175/331 (52%), Positives = 236/331 (71%), Gaps = 1/331 (0%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M  E  +S +   EDA I   LRP+ L ++ GQ      L ++I AAK R E LDHVL  
Sbjct: 1   MSEERFVSGHRRPEDARIEETLRPQRLADYPGQERVKEQLSIYIAAAKKRGEPLDHVLLY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A E+GVN R TSGP I+  GDLAA+LT L + DVLF+DEIHRL+ +
Sbjct: 61  GPPGLGKTTLAHIIAHEMGVNLRITSGPAISHQGDLAAILTQLSEGDVLFVDEIHRLNRL 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE LYPAMEDF LD+++G+GP+AR+++++L RFTLI ATTR G LT+PL+DRFG+ ++L
Sbjct: 121 VEETLYPAMEDFALDIILGKGPAARTLRLDLPRFTLIGATTRYGALTSPLRDRFGVVLQL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  E+L  I+ R A++  + +    A EIA RSRGTPR+A RLLRR+RD+A+V     
Sbjct: 181 QFYSEEELTRILMRAARILNVPLDPGGAREIARRSRGTPRVANRLLRRLRDYAQVRADGV 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           ITR++ADA L  + +D MG D +D + L  I  ++GGGPVG++TI+A  SE  + IED+ 
Sbjct: 241 ITRDVADAGLRMMGVDAMGLDTVDHKVLLTIIHHYGGGPVGLDTIAAATSEEPETIEDVY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           EPY++Q GF+QRTPRGR+    A+++L I  
Sbjct: 301 EPYLMQIGFLQRTPRGRVATRAAYEYLNIPY 331


>gi|270290976|ref|ZP_06197199.1| Holliday junction DNA helicase RuvB [Pediococcus acidilactici 7_4]
 gi|270280372|gb|EFA26207.1| Holliday junction DNA helicase RuvB [Pediococcus acidilactici 7_4]
          Length = 337

 Score =  367 bits (943), Expect = e-99,   Method: Composition-based stats.
 Identities = 174/331 (52%), Positives = 228/331 (68%), Gaps = 2/331 (0%)

Query: 2   MDREGLLSRNVS--QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           MD E + S  V   QE+A+   LRP+ L ++ GQ +    L V+IEAAK R EALDHVL 
Sbjct: 1   MDDERITSSAVQGAQEEANEQSLRPQNLRQYIGQAQIKHELSVYIEAAKKREEALDHVLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA V+A E+ V  R+TSGP I K GDL ALL  L+  D+LFIDEIHRL  
Sbjct: 61  YGPPGLGKTTLAMVIANEMAVQIRTTSGPAIEKPGDLVALLNELQPGDILFIDEIHRLPK 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LY AMEDF +D++VG+GP+A  +   L  FTLI ATTR GLL+ PL+DRFGI   
Sbjct: 121 VVEEMLYSAMEDFFVDIVVGQGPTAHPIHFPLPPFTLIGATTRAGLLSAPLRDRFGIVEH 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           +N+Y  +DL  IV+R A++    + D+ A EIA RSRGTPRI+ RLL+RVRDFAEV +  
Sbjct: 181 MNYYTEDDLANIVKRSAEIFKTNIDDQGAHEIARRSRGTPRISNRLLKRVRDFAEVENDA 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I R +   +L  L +D  G DQ D + LT +   +GGGPVG+ TI+A + E  D I ++
Sbjct: 241 HIDRTLVQTSLKLLQVDDRGLDQTDKKVLTTMIELYGGGPVGLTTIAANIGEEPDTISEM 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
            EPY++Q GF++RTPRGR++   A+ HLG++
Sbjct: 301 YEPYLLQIGFLKRTPRGRMVTERAYAHLGLE 331


>gi|165933118|ref|YP_001649907.1| Holliday junction DNA helicase RuvB [Rickettsia rickettsii str.
           Iowa]
 gi|165908205|gb|ABY72501.1| Holliday junction DNA helicase [Rickettsia rickettsii str. Iowa]
          Length = 354

 Score =  367 bits (943), Expect = e-99,   Method: Composition-based stats.
 Identities = 196/329 (59%), Positives = 253/329 (76%), Gaps = 1/329 (0%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            +LS   S+ D ++  +RP  L+EF GQ +   NL VFI+AAK+R E LDH LF GPPGL
Sbjct: 15  NILSPEKSENDQELP-IRPSYLQEFVGQQQIKENLSVFIKAAKSRNEHLDHTLFYGPPGL 73

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLA++++ E+G NF+STSGP I K  DLAA+LTNLE  DVLFIDEIHRL+  VEE+L
Sbjct: 74  GKTTLAKIISNEIGGNFKSTSGPAILKVADLAAILTNLEKNDVLFIDEIHRLNTAVEEVL 133

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           YPAMEDF+LD+++GEG +ARSVKI L +FTLI ATTR+GLL+NPL+DRFGIP+RLNFY  
Sbjct: 134 YPAMEDFELDIIIGEGSAARSVKITLPKFTLIGATTRLGLLSNPLRDRFGIPMRLNFYNT 193

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           E+LK ++ R +KL  + +TD  + EIA RSRGTPRIA RLLRR+RDFA V     + +E+
Sbjct: 194 EELKKVLNRASKLLDIDLTDSGSEEIAKRSRGTPRIALRLLRRIRDFAAVEGKSRVDKEV 253

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           +D  L RL +D++G D  D RYL  IA N+ GGPVGIETI+A LSE RDA+E+ IEPY+I
Sbjct: 254 SDFGLNRLEVDRIGLDSNDYRYLKFIADNYNGGPVGIETIAAALSEQRDALEETIEPYLI 313

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           Q G +QRTPRGR++   A++HL + +P++
Sbjct: 314 QIGLLQRTPRGRVITIAAFEHLKMSVPNQ 342


>gi|329576229|gb|EGG57747.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX1467]
          Length = 338

 Score =  367 bits (943), Expect = e-99,   Method: Composition-based stats.
 Identities = 175/332 (52%), Positives = 226/332 (68%), Gaps = 1/332 (0%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M + E LLS    + +A I   LRP+ L ++ GQ +    L ++IEAAK+R EALDH L 
Sbjct: 1   MTEEERLLSAASQEAEASIEKSLRPQFLAQYIGQDKVKQELTIYIEAAKSRNEALDHTLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTT+A V+A E+ VN R+TSGP I +AGDL A+L  LE  DVLFIDEIHRL  
Sbjct: 61  YGPPGLGKTTMAMVIANEMNVNIRTTSGPAIERAGDLVAILNELEPGDVLFIDEIHRLPR 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LY AMEDF +D+MVG+G +A  V   L  FTL+ ATTR G+L+ PL+DRFGI   
Sbjct: 121 VVEEMLYSAMEDFYIDIMVGQGTTAHPVHFPLPPFTLVGATTRAGMLSAPLRDRFGIISH 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           + +Y+ +DLK IV R A +    + +E A EIA RSRGTPRIA RLL+RVRDFA+V    
Sbjct: 181 MEYYQEQDLKEIVLRSADIFQTEIFEEGAFEIARRSRGTPRIANRLLKRVRDFAQVQSDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I R IAD AL  L +D  G D +D + L  +   +GGGPVG+ T+S  + E  + +ED+
Sbjct: 241 KIDRAIADKALTLLQVDHQGLDYVDQKLLKTMIDLYGGGPVGLSTLSVNIGEETETVEDM 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
            EPY+IQ+GFI+RTPRGR+  P A+ H G D 
Sbjct: 301 YEPYLIQKGFIKRTPRGRIATPFAYAHFGYDY 332


>gi|150016409|ref|YP_001308663.1| Holliday junction DNA helicase RuvB [Clostridium beijerinckii NCIMB
           8052]
 gi|189046025|sp|A6LTM7|RUVB_CLOB8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|149902874|gb|ABR33707.1| Holliday junction DNA helicase RuvB [Clostridium beijerinckii NCIMB
           8052]
          Length = 347

 Score =  367 bits (943), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 177/325 (54%), Positives = 241/325 (74%), Gaps = 1/325 (0%)

Query: 5   EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E +++++  QED +  L LRP+ + E+ GQ +    L +FI+AAK R EALDH L  GPP
Sbjct: 2   ERIVNQSEMQEDFNSELSLRPQKINEYIGQDKVKERLDIFIKAAKNRKEALDHTLLYGPP 61

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++A+E+G + + TSGP I +AG+LAA+LT L+D DVLFIDEIHRL+  VEE
Sbjct: 62  GLGKTTLANIIAKEMGGDLKITSGPAIERAGELAAILTTLKDYDVLFIDEIHRLNRNVEE 121

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILYPAMED+ LD+++G+G +A+S++I+L +FTLI ATTR+G+LT+PL+DRFG+   + +Y
Sbjct: 122 ILYPAMEDYALDIVIGKGATAKSIRIDLPKFTLIGATTRIGMLTSPLRDRFGVLCAMEYY 181

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
             E+LK IV R A + G A+T+E A EIA RSRGTPRIA RLL+RVRD++EV   K ++ 
Sbjct: 182 TDEELKEIVSRSALVFGCAITEEGALEIAKRSRGTPRIANRLLKRVRDYSEVKSNKLVSL 241

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           + A  AL  L +D  GFD++D + L  I  NF GGPVGIET+S  + E    IED+ EPY
Sbjct: 242 KEAREALELLEVDNQGFDKVDNKILEAIIDNFNGGPVGIETLSYFIGEELGTIEDVYEPY 301

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLG 328
           ++Q+GFI RTPRGR+    A++HLG
Sbjct: 302 LLQKGFIIRTPRGRIASDKAYEHLG 326


>gi|325679018|ref|ZP_08158616.1| Holliday junction DNA helicase RuvB [Ruminococcus albus 8]
 gi|324109522|gb|EGC03740.1| Holliday junction DNA helicase RuvB [Ruminococcus albus 8]
          Length = 345

 Score =  367 bits (943), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 178/331 (53%), Positives = 237/331 (71%), Gaps = 3/331 (0%)

Query: 2   MDREGLLSRNVSQE---DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
            D E  +S   +++   D     LRP +L E+ GQ +   N+K++I+AAK R ++LDHVL
Sbjct: 7   FDFERFVSPKETEQETTDDFEVTLRPLSLNEYIGQDKVKENMKIYIDAAKRRGDSLDHVL 66

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA ++ARE+GVN R+TSGP I K GDLAALL +LE  DVLFIDEIHRLS
Sbjct: 67  LYGPPGLGKTTLANIIAREMGVNIRTTSGPAIEKPGDLAALLASLEKGDVLFIDEIHRLS 126

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
             VEEILYPAMED  +D+++G+GP+ARS++++L+RFTLI ATTR G L+ PL+DRFG+ +
Sbjct: 127 RQVEEILYPAMEDCVVDIIMGKGPAARSIRVDLNRFTLIGATTRSGQLSAPLRDRFGMLM 186

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
            +  Y  E L  IV+R A + G+   D+ A EIA R+RGTPRIA R L+RVRDFAEV   
Sbjct: 187 HMELYTTEQLTDIVKRSATILGVGCDDDGAEEIAGRARGTPRIANRYLKRVRDFAEVIGD 246

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             ITR+IA  AL R+ +D +G D LD R L MI + + GGPVG+ T++A + E    +ED
Sbjct: 247 GRITRDIAGLALNRMEVDSLGLDSLDRRLLEMIIKGYNGGPVGLATLAAAIGEEAVTLED 306

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           + EPY++Q GF+ +TPRGR+   +A+ HLGI
Sbjct: 307 VCEPYLMQLGFLAKTPRGRVATQLAYDHLGI 337


>gi|299134171|ref|ZP_07027364.1| Holliday junction DNA helicase RuvB [Afipia sp. 1NLS2]
 gi|298590918|gb|EFI51120.1| Holliday junction DNA helicase RuvB [Afipia sp. 1NLS2]
          Length = 346

 Score =  367 bits (943), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 226/333 (67%), Positives = 274/333 (82%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M    L++     +D   + LRP+ L EF GQ +A +NL+VFI+AA+ R EALDHVLFVG
Sbjct: 1   MTGPRLVTPERRADDIGDTSLRPQNLSEFVGQAQARANLQVFIDAARKRNEALDHVLFVG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLAQ+VARELGV FR+TSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRL+  V
Sbjct: 61  PPGLGKTTLAQIVARELGVGFRATSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLNPAV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMEDFQLDL++GEGP+ARSVKI+L++FTL+ ATTR GLLTNPL+DRFGIP+RLN
Sbjct: 121 EEVLYPAMEDFQLDLIIGEGPAARSVKIDLAKFTLVGATTRAGLLTNPLRDRFGIPLRLN 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY  ++L+ IV RGA++ G+ +T + A EIA R+RGTPRIAGRLLRRVRDFA  A A  I
Sbjct: 181 FYTEDELEKIVTRGARVLGIGMTKDGANEIARRARGTPRIAGRLLRRVRDFASAADADAI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
            R+IAD AL  L +DK G D +D RYL+ IA N+GGGPVG+ET++A LSEPRDAIED+IE
Sbjct: 241 DRKIADHALGALEVDKAGLDAMDRRYLSTIALNYGGGPVGVETMAAALSEPRDAIEDIIE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           PY+IQ G++QRTPRGRLL   A++HLG+  P R
Sbjct: 301 PYLIQCGYLQRTPRGRLLTDHAFRHLGLAAPSR 333


>gi|205352400|ref|YP_002226201.1| Holliday junction DNA helicase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207856585|ref|YP_002243236.1| Holliday junction DNA helicase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|205272181|emb|CAR37039.1| Holliday junction DNA helicase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|206708388|emb|CAR32692.1| Holliday junction DNA helicase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|261247065|emb|CBG24884.1| Holliday junction DNA helicase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|301158415|emb|CBW17922.1| Holliday junction DNA helicase ruvB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
          Length = 309

 Score =  367 bits (943), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 187/306 (61%), Positives = 235/306 (76%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
            E+ GQ +  S +++FI+AAK R +ALDH+L  GPPGLGKTTLA +VA E+GVN R+TSG
Sbjct: 2   AEYVGQPQVRSQMEIFIQAAKRRGDALDHLLIFGPPGLGKTTLANIVANEMGVNLRTTSG 61

Query: 88  PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSV 147
           PV+ KAGDLAA+LTNLE  DVLFIDEIHRLS +VEE+LYPAMED+QLD+M+GEGP+ARS+
Sbjct: 62  PVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSI 121

Query: 148 KINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEA 207
           KI+L  FTLI ATTR G LT+PL+DRFGI  RL FY++ DL+ IV R A+  GL ++D+ 
Sbjct: 122 KIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQHIVGRSARHMGLEMSDDG 181

Query: 208 ACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRY 267
           A E+A R+RGTPRIA RLLRRVRDFAEV H   I+ EIA  AL  L +D  GFD +D + 
Sbjct: 182 ALEVARRARGTPRIANRLLRRVRDFAEVKHDGAISAEIAAQALDMLNVDAEGFDYMDRKL 241

Query: 268 LTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHL 327
           L  +   F GGPVG++ ++A + E R+ IED++EPY+IQQGF+QRTPRGR+    AW H 
Sbjct: 242 LLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMATVRAWNHF 301

Query: 328 GIDIPH 333
           GI  P 
Sbjct: 302 GITPPE 307


>gi|262368600|ref|ZP_06061929.1| Holliday junction helicase [Acinetobacter johnsonii SH046]
 gi|262316278|gb|EEY97316.1| Holliday junction helicase [Acinetobacter johnsonii SH046]
          Length = 336

 Score =  367 bits (943), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 182/330 (55%), Positives = 242/330 (73%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           ++ L+  +   ED     +RP +L+++ GQ      +++FI AA+ R EALDH L  GPP
Sbjct: 2   QDRLIGGSEKPEDHIDRAIRPTSLDDYIGQPVVREQMEIFIGAARGRGEALDHTLIFGPP 61

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++ARE+G N +STSGPV+ +AGDLAA+LTNLE+ DVLFIDEIHRLS ++EE
Sbjct: 62  GLGKTTLANIIAREMGGNLKSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPVIEE 121

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILYPAMED+QLD+M+GEGP+ARS+K++L  FTL+AATTR GLLT+PL+DRFGI  RL FY
Sbjct: 122 ILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRLEFY 181

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            + DL  IV R A L  + +T E + EIA RSRGTPRIA RLLRRVRD+A+V     +T+
Sbjct: 182 SVTDLTHIVTRSANLMDVPITREGSAEIARRSRGTPRIANRLLRRVRDYAQVKGTGEVTQ 241

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           ++A  AL  L +DK G D LD RYL+M+   F GGP G+E ++A ++E    +ED+IEPY
Sbjct: 242 DMAQRALDMLNVDKDGLDTLDRRYLSMLLERFDGGPGGVEALAAAMAEDSGTLEDVIEPY 301

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +IQQG++ RT RGR+   +A+   G+  P 
Sbjct: 302 LIQQGYVMRTARGRIATNMAYLQFGMTPPE 331


>gi|262278157|ref|ZP_06055942.1| Holliday junction resolvasome protein [Acinetobacter calcoaceticus
           RUH2202]
 gi|262258508|gb|EEY77241.1| Holliday junction resolvasome protein [Acinetobacter calcoaceticus
           RUH2202]
          Length = 334

 Score =  367 bits (943), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 180/330 (54%), Positives = 240/330 (72%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           ++ L+S     ED     +RP +L ++ GQ      +++FI AA+ R EALDH L  GPP
Sbjct: 2   QDRLISGAEKPEDHFDRAIRPTSLADYIGQPVVREQMEIFIGAARGRGEALDHTLIFGPP 61

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++ARE+G N +STSGPV+ +AGDLAA+LTNLE+ DVLFIDEIHRLS ++EE
Sbjct: 62  GLGKTTLANIIAREMGGNLKSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPVIEE 121

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILYPAMED+QLD+M+GEGP+ARS+K++L  FTL+AATTR GLLT+PL+DRFGI  RL FY
Sbjct: 122 ILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRLEFY 181

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            +EDL  IV R A L  + +T E + E+A R+RGTPRIA RLLRRVRD+A+V     +T 
Sbjct: 182 SVEDLTHIVSRSANLMNVPITVEGSEEVARRARGTPRIANRLLRRVRDYAQVKGTGEVTH 241

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           ++A  AL  L +DK G D LD RYL+M+   F GGP G+E ++A ++E    +ED++EPY
Sbjct: 242 DMAQRALDMLNVDKAGLDTLDRRYLSMLLERFDGGPAGVEALAAAMAEDSGTLEDVLEPY 301

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +IQQG++ RT RGR+    ++   G+  P 
Sbjct: 302 LIQQGYVMRTARGRIATNQSYLQFGLTPPE 331


>gi|282852796|ref|ZP_06262138.1| Holliday junction DNA helicase RuvB [Lactobacillus gasseri 224-1]
 gi|282556538|gb|EFB62158.1| Holliday junction DNA helicase RuvB [Lactobacillus gasseri 224-1]
          Length = 336

 Score =  367 bits (943), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 175/332 (52%), Positives = 230/332 (69%), Gaps = 1/332 (0%)

Query: 1   MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M D E ++    ++ED  I L LRP+ L ++ GQ +  S +K++I+AAK R EALDHVL 
Sbjct: 1   MNDEERIIGAESNEEDETIELSLRPQLLAQYIGQDKVKSEMKIYIKAAKQRDEALDHVLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA V+A E+GV+ +STSGP I KAGDL ALL+ L   DVLFIDEIHRL+ 
Sbjct: 61  YGPPGLGKTTLAFVIANEMGVHLKSTSGPAIEKAGDLVALLSELNPGDVLFIDEIHRLAK 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEE+LY AMEDF +D++VGEG +  +V + L  FTLI ATTR G L+ PL+DRFGI   
Sbjct: 121 PVEEVLYSAMEDFYIDIVVGEGQTTHAVHVPLPPFTLIGATTRAGQLSAPLRDRFGIIEH 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           + +Y I+DL+ I+QR + +    +  EAA E+A RSRGTPR+A RLL+RVRDFAEV   +
Sbjct: 181 MQYYSIDDLEKIIQRSSVVFNTKIDPEAAIELARRSRGTPRVANRLLKRVRDFAEVKGEE 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I+      +L  L +D  G DQ D + L M+  N+GGGPVGI+TI+A + E  D IE++
Sbjct: 241 AISLATTKHSLHLLEVDDEGLDQTDRKLLRMMIENYGGGPVGIKTIAANVGEDTDTIEEV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
            EPY++Q+GFI RTPRGR +   A+  LG   
Sbjct: 301 YEPYLLQKGFITRTPRGRSVTQKAYLQLGYPP 332


>gi|29374723|ref|NP_813875.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis V583]
 gi|227555749|ref|ZP_03985796.1| Holliday junction DNA helicase B [Enterococcus faecalis HH22]
 gi|229547069|ref|ZP_04435794.1| Holliday junction DNA helicase B [Enterococcus faecalis TX1322]
 gi|229550641|ref|ZP_04439366.1| Holliday junction DNA helicase B [Enterococcus faecalis ATCC 29200]
 gi|257421401|ref|ZP_05598391.1| holliday junction DNA helicase ruvB [Enterococcus faecalis X98]
 gi|293384505|ref|ZP_06630376.1| holliday junction DNA helicase RuvB [Enterococcus faecalis R712]
 gi|293389010|ref|ZP_06633492.1| holliday junction DNA helicase RuvB [Enterococcus faecalis S613]
 gi|294780022|ref|ZP_06745401.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis PC1.1]
 gi|300862207|ref|ZP_07108287.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TUSoD
           Ef11]
 gi|307268983|ref|ZP_07550346.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX4248]
 gi|307274077|ref|ZP_07555286.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX0855]
 gi|307276310|ref|ZP_07557436.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX2134]
 gi|307284122|ref|ZP_07564292.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX0860]
 gi|307287113|ref|ZP_07567186.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX0109]
 gi|312901231|ref|ZP_07760514.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX0470]
 gi|312903816|ref|ZP_07762988.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX0635]
 gi|312908742|ref|ZP_07767682.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis DAPTO
           512]
 gi|312952498|ref|ZP_07771366.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX0102]
 gi|312979205|ref|ZP_07790909.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis DAPTO
           516]
 gi|44888455|sp|Q839T5|RUVB_ENTFA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|29342181|gb|AAO79947.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis V583]
 gi|227175104|gb|EEI56076.1| Holliday junction DNA helicase B [Enterococcus faecalis HH22]
 gi|229304207|gb|EEN70203.1| Holliday junction DNA helicase B [Enterococcus faecalis ATCC 29200]
 gi|229307798|gb|EEN73785.1| Holliday junction DNA helicase B [Enterococcus faecalis TX1322]
 gi|257163225|gb|EEU93185.1| holliday junction DNA helicase ruvB [Enterococcus faecalis X98]
 gi|291078161|gb|EFE15525.1| holliday junction DNA helicase RuvB [Enterococcus faecalis R712]
 gi|291081629|gb|EFE18592.1| holliday junction DNA helicase RuvB [Enterococcus faecalis S613]
 gi|294452916|gb|EFG21339.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis PC1.1]
 gi|295112393|emb|CBL31030.1| Holliday junction DNA helicase, RuvB subunit [Enterococcus sp.
           7L76]
 gi|300848732|gb|EFK76489.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TUSoD
           Ef11]
 gi|306501892|gb|EFM71182.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX0109]
 gi|306503493|gb|EFM72742.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX0860]
 gi|306506975|gb|EFM76119.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX2134]
 gi|306509202|gb|EFM78263.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX0855]
 gi|306514652|gb|EFM83204.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX4248]
 gi|310625341|gb|EFQ08624.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis DAPTO
           512]
 gi|310629594|gb|EFQ12877.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX0102]
 gi|310632760|gb|EFQ16043.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX0635]
 gi|311287970|gb|EFQ66526.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis DAPTO
           516]
 gi|311291608|gb|EFQ70164.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX0470]
 gi|315033493|gb|EFT45425.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX0017]
 gi|315036484|gb|EFT48416.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX0027]
 gi|315143242|gb|EFT87258.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX2141]
 gi|315148994|gb|EFT93010.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX4244]
 gi|315151352|gb|EFT95368.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX0012]
 gi|315153489|gb|EFT97505.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX0031]
 gi|315155060|gb|EFT99076.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX0043]
 gi|315158503|gb|EFU02520.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX0312]
 gi|315165798|gb|EFU09815.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX1302]
 gi|315171309|gb|EFU15326.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX1342]
 gi|315174119|gb|EFU18136.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX1346]
 gi|315573927|gb|EFU86118.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX0309B]
 gi|315579776|gb|EFU91967.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX0630]
 gi|315581879|gb|EFU94070.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX0309A]
 gi|323479299|gb|ADX78738.1| holliday junction DNA helicase RuvB [Enterococcus faecalis 62]
 gi|327533914|gb|AEA92748.1| crossover junction ATP-dependent DNA helicase RuvB [Enterococcus
           faecalis OG1RF]
          Length = 338

 Score =  367 bits (943), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 175/332 (52%), Positives = 225/332 (67%), Gaps = 1/332 (0%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M + E LLS    + +A I   LRP+ L ++ GQ +    L ++IEAAK R EALDH L 
Sbjct: 1   MTEEERLLSAASQEAEASIEKSLRPQFLAQYIGQDKVKQELTIYIEAAKNRNEALDHTLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTT+A V+A E+ VN R+TSGP I +AGDL A+L  LE  DVLFIDEIHRL  
Sbjct: 61  YGPPGLGKTTMAMVIANEMNVNIRTTSGPAIERAGDLVAILNELEPGDVLFIDEIHRLPR 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LY AMEDF +D+MVG+G +A  V   L  FTL+ ATTR G+L+ PL+DRFGI   
Sbjct: 121 VVEEMLYSAMEDFYIDIMVGQGTTAHPVHFPLPPFTLVGATTRAGMLSAPLRDRFGIISH 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           + +Y+ +DLK IV R A +    + +E A EIA RSRGTPRIA RLL+RVRDFA+V    
Sbjct: 181 MEYYQEQDLKEIVLRSADIFQTEIFEEGAFEIARRSRGTPRIANRLLKRVRDFAQVQSDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I R IAD AL  L +D  G D +D + L  +   +GGGPVG+ T+S  + E  + +ED+
Sbjct: 241 KIDRAIADKALTLLQVDHQGLDYVDQKLLKTMIDLYGGGPVGLSTLSVNIGEETETVEDM 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
            EPY+IQ+GFI+RTPRGR+  P A+ H G D 
Sbjct: 301 YEPYLIQKGFIKRTPRGRIATPFAYAHFGYDY 332


>gi|210635284|ref|ZP_03298480.1| hypothetical protein COLSTE_02411 [Collinsella stercoris DSM 13279]
 gi|210158445|gb|EEA89416.1| hypothetical protein COLSTE_02411 [Collinsella stercoris DSM 13279]
          Length = 356

 Score =  367 bits (943), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 171/333 (51%), Positives = 241/333 (72%), Gaps = 1/333 (0%)

Query: 3   DREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           D E  ++  ++ +D D+   LRP+ L+++ GQ     +LK+ IEAA++R E+LDHV+F G
Sbjct: 24  DNERFVTGELTSDDLDVERSLRPQRLDDYCGQDHIKQSLKILIEAAQSRGESLDHVIFSG 83

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA VVA E+G   ++TSGP IA+ GDLAA+LTNL+  DVLFIDEIHRL+  V
Sbjct: 84  PPGLGKTTLATVVANEMGAQIKTTSGPAIARTGDLAAILTNLQPGDVLFIDEIHRLNRQV 143

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILYPAMEDF LD+++G+GP+ARS+++++  FTL+ ATTR G+LT PL+DRFGI  RL+
Sbjct: 144 EEILYPAMEDFSLDIVIGKGPAARSIRLDIPHFTLVGATTRSGMLTGPLRDRFGISFRLD 203

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y IEDL  IV R A + G+ +  E+A E+A RSRGTPR+A RLL+RVRD+A+V    +I
Sbjct: 204 YYGIEDLADIVCRSAAILGVEIDRESAKEVASRSRGTPRLANRLLKRVRDYAQVKGEGSI 263

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
              IA  A+    ID++G D +D+R L  + + F G  VG+ T+++   E  + +ED+ E
Sbjct: 264 ELGIAQEAMAFFEIDELGLDWMDIRILETLCKTFRGRAVGLSTLASATGEDANTLEDVYE 323

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           PY++Q G I RTP+GR+  P A++HLG++   R
Sbjct: 324 PYLLQCGLIVRTPQGRMATPAAFEHLGMEPAAR 356


>gi|313892062|ref|ZP_07825660.1| Holliday junction DNA helicase RuvB [Dialister microaerophilus UPII
           345-E]
 gi|329120928|ref|ZP_08249560.1| crossover junction ATP-dependent DNA helicase RuvB [Dialister
           micraerophilus DSM 19965]
 gi|313119514|gb|EFR42708.1| Holliday junction DNA helicase RuvB [Dialister microaerophilus UPII
           345-E]
 gi|327471387|gb|EGF16838.1| crossover junction ATP-dependent DNA helicase RuvB [Dialister
           micraerophilus DSM 19965]
          Length = 365

 Score =  367 bits (942), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 179/331 (54%), Positives = 230/331 (69%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           +++ ++  N    D     LRP+  E++ GQ E   NL ++++AAK R EALDHVL  GP
Sbjct: 15  NKDRMVEANEISGDNWQQTLRPKIFEDYIGQSELKQNLNIYVKAAKNRKEALDHVLLYGP 74

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++A ELGVNFR TSGP I + GDLAALLTNL + DVLFIDEIHRL+  VE
Sbjct: 75  PGLGKTTLAGIIANELGVNFRVTSGPAIERPGDLAALLTNLNEHDVLFIDEIHRLNRSVE 134

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILYPAMEDF LD+++G+GP ARS  + ++ FTLI ATTR G L  PL+DRFGI  R+ F
Sbjct: 135 EILYPAMEDFALDIIIGKGPGARSYHMPIAPFTLIGATTRAGSLAAPLRDRFGIIFRMKF 194

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  ++LK I+ R A +  + +  + A EIA RSRGTPRIA RLL+RVRDFA+V     IT
Sbjct: 195 YNPQELKQIIIRSANILQIKIETKGAEEIAKRSRGTPRIANRLLKRVRDFAQVLGTGVIT 254

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            +IA  AL  L ID +G D  DL  +  I   F GGPVGI+TI+A +SE +  IED+ EP
Sbjct: 255 EDIAQKALSALHIDCLGLDVTDLEVIRTIITKFDGGPVGIDTIAASVSEEKSTIEDVYEP 314

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           Y+++ GF+ RTPRGR+    A++HL I +  
Sbjct: 315 YLMKIGFLSRTPRGRIATKAAYKHLNISVDE 345


>gi|222529108|ref|YP_002572990.1| Holliday junction DNA helicase RuvB [Caldicellulosiruptor bescii
           DSM 6725]
 gi|254767406|sp|B9MRB3|RUVB_ANATD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|222455955|gb|ACM60217.1| Holliday junction DNA helicase RuvB [Caldicellulosiruptor bescii
           DSM 6725]
          Length = 338

 Score =  367 bits (942), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 171/323 (52%), Positives = 229/323 (70%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           E LL    S ED     LRP+TLEE+ GQ +    +K+FIEAAK R E LDHVL  GPPG
Sbjct: 2   ERLLDNKFSIEDVHEESLRPKTLEEYIGQQKVKEKIKIFIEAAKKRKEPLDHVLLYGPPG 61

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLA ++A E+GV+ + TSGP I +AGDL A+LTN+ + ++LFIDEIHRL+  +EE+
Sbjct: 62  LGKTTLANIIANEMGVDIKITSGPAIERAGDLVAILTNIGENNILFIDEIHRLNRTIEEV 121

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPAMED ++D+++G+GPSA+++++ L  FTLI ATTR GLL++PL+DRFGI  RL++Y 
Sbjct: 122 LYPAMEDKKVDIVIGKGPSAKTIRLTLPPFTLIGATTRAGLLSSPLRDRFGIIERLDYYT 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +E+L  IV R A +    +  EA  EIA RSRGTPR+A RLLRR+RD+A V H  +IT E
Sbjct: 182 VEELSQIVMRSASILKCDIEKEACIEIAKRSRGTPRVANRLLRRLRDYAMVKHTGSITYE 241

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +A + L    +D+ G D +D   L  I   FGGGPVG+ TI+A +SE    IED+ EPY+
Sbjct: 242 VAKSGLEMFEVDEYGLDLVDRNILEAIVYKFGGGPVGLSTIAAAISEDEGTIEDIYEPYL 301

Query: 305 IQQGFIQRTPRGRLLMPIAWQHL 327
           IQ+GF+ +T RGR+    A  H+
Sbjct: 302 IQEGFLVKTARGRVATQKAISHI 324


>gi|16803572|ref|NP_465057.1| Holliday junction DNA helicase RuvB [Listeria monocytogenes EGD-e]
 gi|47097029|ref|ZP_00234602.1| holliday junction DNA helicase RuvB [Listeria monocytogenes str.
           1/2a F6854]
 gi|224499807|ref|ZP_03668156.1| Holliday junction DNA helicase RuvB [Listeria monocytogenes Finland
           1988]
 gi|224501528|ref|ZP_03669835.1| Holliday junction DNA helicase RuvB [Listeria monocytogenes FSL
           R2-561]
 gi|254829709|ref|ZP_05234364.1| Holliday junction DNA helicase RuvB [Listeria monocytogenes 10403S]
 gi|254898302|ref|ZP_05258226.1| Holliday junction DNA helicase RuvB [Listeria monocytogenes J0161]
 gi|254912206|ref|ZP_05262218.1| holliday junction ATP-dependent DNA helicase ruvB [Listeria
           monocytogenes J2818]
 gi|254936534|ref|ZP_05268231.1| ruvB [Listeria monocytogenes F6900]
 gi|255027599|ref|ZP_05299585.1| Holliday junction DNA helicase RuvB [Listeria monocytogenes FSL
           J2-003]
 gi|255030239|ref|ZP_05302190.1| Holliday junction DNA helicase RuvB [Listeria monocytogenes LO28]
 gi|284801922|ref|YP_003413787.1| Holliday junction DNA helicase B [Listeria monocytogenes 08-5578]
 gi|284995064|ref|YP_003416832.1| Holliday junction DNA helicase B [Listeria monocytogenes 08-5923]
 gi|20140052|sp|Q8Y6Z8|RUVB_LISMO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|16410961|emb|CAC99610.1| ruvB [Listeria monocytogenes EGD-e]
 gi|47014611|gb|EAL05571.1| holliday junction DNA helicase RuvB [Listeria monocytogenes str.
           1/2a F6854]
 gi|258609128|gb|EEW21736.1| ruvB [Listeria monocytogenes F6900]
 gi|284057484|gb|ADB68425.1| Holliday junction DNA helicase B [Listeria monocytogenes 08-5578]
 gi|284060531|gb|ADB71470.1| Holliday junction DNA helicase B [Listeria monocytogenes 08-5923]
 gi|293590179|gb|EFF98513.1| holliday junction ATP-dependent DNA helicase ruvB [Listeria
           monocytogenes J2818]
          Length = 335

 Score =  367 bits (942), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 180/331 (54%), Positives = 233/331 (70%), Gaps = 1/331 (0%)

Query: 2   MDREGLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD   + S  V  E+ +  + LRP+ L ++ GQ +  +NL VFIEAA  R EALDHVL  
Sbjct: 1   MDERIISSETVDAEEVSFETSLRPQNLSQYIGQDKVKNNLTVFIEAATLRNEALDHVLLY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA V+A E+G   ++TSGP I + GDLA +LT+LE  DVLFIDEIHRLS  
Sbjct: 61  GPPGLGKTTLAMVIASEMGSQIKTTSGPAIERPGDLATILTSLEPGDVLFIDEIHRLSRA 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EEILYPAMED+ LD+++G GP+ARSV+++L  FTLI ATTR GLL+ PL+DRFG+   L
Sbjct: 121 IEEILYPAMEDYCLDIVIGTGPTARSVRLDLPPFTLIGATTRAGLLSAPLRDRFGVIDHL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  E L  IV R + +    + D  A EIA RSRGTPRIA RLL+RVRDFA+V    T
Sbjct: 181 EFYTEEQLTEIVLRTSNILDTKIDDLGAREIARRSRGTPRIANRLLKRVRDFAQVRGNGT 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +T ++A  AL  L +D  G D +D + L  I ++F GGPVG++TI+A + E R+ IED+ 
Sbjct: 241 VTEKLAKEALTLLQVDPRGLDTIDQKLLHTIIQSFRGGPVGLDTIAASIGEERETIEDMQ 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           EPY++Q GF+QRTPRGR++   A+ HLGI  
Sbjct: 301 EPYLLQIGFLQRTPRGRIVTETAYNHLGISY 331


>gi|160888649|ref|ZP_02069652.1| hypothetical protein BACUNI_01066 [Bacteroides uniformis ATCC 8492]
 gi|317477987|ref|ZP_07937170.1| Holliday junction DNA helicase RuvB [Bacteroides sp. 4_1_36]
 gi|156861963|gb|EDO55394.1| hypothetical protein BACUNI_01066 [Bacteroides uniformis ATCC 8492]
 gi|316905901|gb|EFV27672.1| Holliday junction DNA helicase RuvB [Bacteroides sp. 4_1_36]
          Length = 392

 Score =  367 bits (942), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 175/331 (52%), Positives = 237/331 (71%), Gaps = 4/331 (1%)

Query: 2   MDREGLLSRN----VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M++E    RN     S+E    + LRP   E+F+GQ +   NL++F++AA+ R EALDHV
Sbjct: 48  MEQEDFDIRNQQPVTSRERDFENALRPLNFEDFSGQDKVVDNLRIFVKAARLRGEALDHV 107

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTL+ ++A ELGV F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRL
Sbjct: 108 LLHGPPGLGKTTLSNIIANELGVGFKITSGPVLDKPGDLAGVLTSLEPNDVLFIDEIHRL 167

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           S +VEE LY AMED+++D+M+ +GPSARS++I+L+ FTL+ ATTR GLLT PL+ RFGI 
Sbjct: 168 SPVVEEYLYSAMEDYRIDIMIDKGPSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGIN 227

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
           + L +Y+ + L  I++R + +  +  +  AA EIA RSRGTPRIA  LLRRVRDFA+V  
Sbjct: 228 LHLEYYDDDVLSGIIRRSSGILDVPCSVRAAAEIASRSRGTPRIANALLRRVRDFAQVKG 287

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
           + +I  EIA  AL  L IDK G D++D + L  I   F GGPVG+ TI+  L E    IE
Sbjct: 288 SGSIDTEIAQFALEALNIDKYGLDEIDNKILCTIIDKFKGGPVGLTTIATALGEDAGTIE 347

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
           ++ EP++I++GF++RTPRGR +  +A++HLG
Sbjct: 348 EVYEPFLIKEGFLKRTPRGREVTELAYKHLG 378


>gi|303233191|ref|ZP_07319864.1| Holliday junction DNA helicase RuvB [Atopobium vaginae PB189-T1-4]
 gi|302480776|gb|EFL43863.1| Holliday junction DNA helicase RuvB [Atopobium vaginae PB189-T1-4]
          Length = 369

 Score =  367 bits (942), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 167/328 (50%), Positives = 232/328 (70%), Gaps = 1/328 (0%)

Query: 6   GLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
             +    + ED D+   LRP TL ++ GQ     N++V I AAK R E LDHVLF GPPG
Sbjct: 39  RNVDPTCTDEDIDVERSLRPETLSDYCGQTRVRENMRVLISAAKERNETLDHVLFSGPPG 98

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLA +VA E+    ++TSGP I + GDLAALLTNLE+ DVLF+DEIHRL+  +EE+
Sbjct: 99  LGKTTLASIVAHEMNARLKTTSGPAITRTGDLAALLTNLEEGDVLFVDEIHRLNHQIEEV 158

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPAMEDF LD+++G+GP+ARS++++L  FTLI ATTR GLL+ PL+DRFGI  +L++Y 
Sbjct: 159 LYPAMEDFVLDIVIGKGPAARSIRLDLPHFTLIGATTRTGLLSGPLRDRFGISYQLDYYS 218

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +E+L  IV R A +  + +  + A EIA RSRGTPR+A RLL+RVRD+A+V  A TI+ +
Sbjct: 219 VEELAAIVTRSAGILQVDIDRQGALEIASRSRGTPRLANRLLKRVRDYAQVRAAGTISWD 278

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +A  AL    ID++G D +D + L  + + F G PVG+ T+S+ + E    +ED+ EPY+
Sbjct: 279 VASEALKFFEIDELGLDWMDKKILDALCKTFRGRPVGLTTLSSAVGEDPATLEDVYEPYL 338

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           +QQG + RTP+GR    +A++H+G+  P
Sbjct: 339 LQQGLLVRTPQGRQATSMAFEHVGLPAP 366


>gi|159043654|ref|YP_001532448.1| Holliday junction DNA helicase RuvB [Dinoroseobacter shibae DFL 12]
 gi|157911414|gb|ABV92847.1| holliday junction DNA helicase RuvB [Dinoroseobacter shibae DFL 12]
          Length = 357

 Score =  367 bits (942), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 212/334 (63%), Positives = 263/334 (78%), Gaps = 2/334 (0%)

Query: 2   MDREGLLSRNVSQEDAD--ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M  +  L      ++ D     LRP++L+ F GQ EA +NL+VF+E+A+ R EA+DHVLF
Sbjct: 1   MQSDPTLRPEPLPDERDGADRALRPQSLDAFIGQAEARANLRVFVESARRRGEAMDHVLF 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLAQ++ARELGVNFR TSGPV+AKAGDLAALLTNLE RDVLFIDEIHRL+ 
Sbjct: 61  HGPPGLGKTTLAQIMARELGVNFRMTSGPVLAKAGDLAALLTNLEARDVLFIDEIHRLNP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPA+EDF+LDL++GEGP+AR+V+I L  FTL+ ATTR+GLLT PL+DRFGIP+R
Sbjct: 121 VVEEVLYPALEDFELDLVIGEGPAARTVRIELQPFTLVGATTRLGLLTTPLRDRFGIPVR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY  E+L+ IV RGA++  +        EIA R+RGTPRIAGRLLRRV DFA V    
Sbjct: 181 LQFYSAEELEQIVARGARMLDVPAEPSGIAEIARRARGTPRIAGRLLRRVVDFALVEGDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           TITR +AD AL RL +D+ G D  D RYL+++A N+GGGPVGIETISA LSE RDA+E++
Sbjct: 241 TITRAVADGALTRLGVDRAGLDGGDRRYLSLLADNYGGGPVGIETISAALSEARDAVEEV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           IEPY++QQGF+QRTPRGR+L   AW HLG++ P 
Sbjct: 301 IEPYLLQQGFLQRTPRGRMLARKAWAHLGLEPPR 334


>gi|259502858|ref|ZP_05745760.1| crossover junction endoribonuclease subunit B [Lactobacillus antri
           DSM 16041]
 gi|259169225|gb|EEW53720.1| crossover junction endoribonuclease subunit B [Lactobacillus antri
           DSM 16041]
          Length = 342

 Score =  367 bits (942), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 171/331 (51%), Positives = 231/331 (69%), Gaps = 2/331 (0%)

Query: 4   REGLLS--RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           ++ +LS       E+     LRP+TL ++ GQ +    L+V+IEAA+ R EALDHVL  G
Sbjct: 7   QDNVLSDRSQDEAEEQIELTLRPQTLRDYIGQAQLKDKLRVYIEAAREREEALDHVLLYG 66

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA V+A E+ VN ++TSGP I K GDL ALL  L+  DVLFIDEIHRL  +V
Sbjct: 67  PPGLGKTTLAMVIAHEMAVNIKTTSGPAIEKPGDLVALLNELQPGDVLFIDEIHRLPKVV 126

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMED+ +D++VGEGP+A  V   L  FTLI ATTR G+L+ PL+DRFGI   +N
Sbjct: 127 EEMLYSAMEDYYIDIVVGEGPTAHPVHFPLPPFTLIGATTRAGMLSAPLRDRFGIVEHMN 186

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y  ++LK I+ R A++    + ++ A E+A+RSRGTPRIA RLL+RVRDFA+VAH + I
Sbjct: 187 YYNQDELKQIIFRSARIFATRIEEQGAHELALRSRGTPRIANRLLKRVRDFAQVAHQQAI 246

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
              I   AL  L +D  G D++D + L  +   + GGPVG++TI+A + E  + IE++ E
Sbjct: 247 GASIVKQALDLLQVDSRGLDEIDRKMLLTMINFYHGGPVGLKTIAANIGEETNTIEEMYE 306

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           PY+IQ G+I RTPRGR++ P A+ HLGI+ P
Sbjct: 307 PYLIQIGYISRTPRGRVVTPAAYDHLGINYP 337


>gi|84501646|ref|ZP_00999818.1| Holliday junction DNA helicase RuvB [Oceanicola batsensis HTCC2597]
 gi|84390267|gb|EAQ02826.1| Holliday junction DNA helicase RuvB [Oceanicola batsensis HTCC2597]
          Length = 342

 Score =  367 bits (942), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 204/333 (61%), Positives = 255/333 (76%), Gaps = 1/333 (0%)

Query: 2   MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M  +  L  +   EDA+ +  LRP+TL++F GQ EA +NL+VF+++A+ R EA+DH LF 
Sbjct: 1   MSSDPTLRPDPLPEDAEDTRALRPQTLDDFIGQREARANLRVFVQSARQRGEAMDHTLFH 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++ARELGVNFR TSGPV+AKAGDLAA+LTNLE RDVLFIDEIHRL+  
Sbjct: 61  GPPGLGKTTLAQIMARELGVNFRMTSGPVLAKAGDLAAILTNLEARDVLFIDEIHRLNPA 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPA+EDF+LDL++GEGP+AR+V+I L  FTL+ ATTR+GLLT PL+DRFGIP RL
Sbjct: 121 VEEVLYPALEDFELDLVIGEGPAARTVRIELQPFTLVGATTRLGLLTTPLRDRFGIPTRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  ++L  IV R A+  G     + A EIA R+RGTPRIAGRLLRRV DFA V     
Sbjct: 181 QFYTEDELHEIVTRNARKLGAPADADGAREIARRARGTPRIAGRLLRRVVDFAVVEGDGR 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           ITR++AD AL RL +D +G D  D RYL MI  ++ GGPVGIET+ A LSE RD++E++I
Sbjct: 241 ITRDLADNALTRLGVDNLGLDGADRRYLKMIGEDYQGGPVGIETLCAALSESRDSVEEVI 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY++QQ  IQRTPRGR+L    W H+G+  P 
Sbjct: 301 EPYLLQQALIQRTPRGRMLAARGWAHIGLPPPR 333


>gi|312143983|ref|YP_003995429.1| Holliday junction DNA helicase RuvB [Halanaerobium sp.
           'sapolanicus']
 gi|311904634|gb|ADQ15075.1| Holliday junction DNA helicase RuvB [Halanaerobium sp.
           'sapolanicus']
          Length = 344

 Score =  367 bits (942), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 174/331 (52%), Positives = 243/331 (73%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M +   ++S    ++D  +   LRP+TL E+ GQ ++   LK+FIEAA  R EALDHV+ 
Sbjct: 1   MENERRVVSPKKKKDDIKVDKGLRPQTLAEYIGQSKSKEKLKIFIEAACNREEALDHVML 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A EL VN   TSGP I + GDLA++LTNL+ +DVLFIDEIHRL+ 
Sbjct: 61  YGPPGLGKTTLAAIIANELNVNIHQTSGPAIERPGDLASILTNLQSKDVLFIDEIHRLNK 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+ LD+++G+GPSARSV+++L+ FTL+ ATT+ G L++PL+DRFG+  R
Sbjct: 121 MVEEVLYPAMEDYCLDIIIGKGPSARSVRLDLAPFTLVGATTKAGRLSSPLRDRFGVINR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY  ++L+ I+ R A++  + +    A EIA RSRGTPRIA RLL+RVRDFA+V    
Sbjct: 181 LEFYNKDELQEIILRSAEILNVDIESHGALEIARRSRGTPRIANRLLKRVRDFAQVKADG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I +++ D+AL  L ID++G D++D + L  I   FGGGPVG+ T++A +SE  + IED+
Sbjct: 241 IINQKVVDSALKLLEIDELGLDRIDHKLLKTIILKFGGGPVGLNTLAASISEETETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
            EPY++Q GF++RTPRGR+    A+QHL I+
Sbjct: 301 YEPYLLQLGFLERTPRGRVASLKAYQHLKIN 331


>gi|89895212|ref|YP_518699.1| Holliday junction DNA helicase B [Desulfitobacterium hafniense Y51]
 gi|219669643|ref|YP_002460078.1| Holliday junction DNA helicase RuvB [Desulfitobacterium hafniense
           DCB-2]
 gi|122997256|sp|Q24UN7|RUVB_DESHY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|254767424|sp|B8FQV5|RUVB_DESHD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|89334660|dbj|BAE84255.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219539903|gb|ACL21642.1| Holliday junction DNA helicase RuvB [Desulfitobacterium hafniense
           DCB-2]
          Length = 348

 Score =  367 bits (942), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 181/328 (55%), Positives = 238/328 (72%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
            E +++      D +  +LRP  L ++ GQ +   NL++FI+AA AR EALDHVL  GPP
Sbjct: 2   EERMITPQQLPGDQEGEVLRPHRLADYIGQTKVKDNLQIFIQAALARGEALDHVLLYGPP 61

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++A E+ VN R+TSGP I + GDLAA+LT+LE RDVLFIDEIHRLS   EE
Sbjct: 62  GLGKTTLANIIATEMEVNIRTTSGPAIERPGDLAAILTSLEPRDVLFIDEIHRLSRTTEE 121

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILY AMED  LD+++G+GPSARS+++ L  FTL+ ATTR G L +PL+DRFG+  RL FY
Sbjct: 122 ILYSAMEDGCLDIVIGKGPSARSIRLTLPPFTLVGATTRAGQLASPLRDRFGVISRLEFY 181

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           E+EDL  I+ R A +  L +T E A EIA RSRGTPR+A RLL+RVRD+A+V     +T+
Sbjct: 182 EVEDLIRIITRAAGILNLQITLEGASEIARRSRGTPRVANRLLKRVRDYAQVWEDGRVTQ 241

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           E+A  +L RL +D  G D++D + L  I + F GGPVG+ET+SA + E  + IED++EPY
Sbjct: 242 ELAGKSLDRLEVDPAGLDRIDQKCLLTIIQMFAGGPVGLETLSATIGEEAETIEDVVEPY 301

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           ++QQGFIQRTPRGR+    A+QHL I +
Sbjct: 302 LLQQGFIQRTPRGRVATVRAYQHLNIPV 329


>gi|159898816|ref|YP_001545063.1| Holliday junction DNA helicase RuvB [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159891855|gb|ABX04935.1| Holliday junction DNA helicase RuvB [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 354

 Score =  367 bits (942), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 179/330 (54%), Positives = 234/330 (70%), Gaps = 1/330 (0%)

Query: 5   EGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           + ++S    +ED  +   LRP+ L E+ GQ +  +NLK+ I AAK R E LDH LF GPP
Sbjct: 9   QRMISPKPREEDQVVEKSLRPKKLAEYIGQEKVLANLKIAIAAAKQRKEPLDHTLFYGPP 68

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTL+ ++A E+GVN + TSGP I +AGDLAA+LTNL+  D+LFIDE+HRL+  VEE
Sbjct: 69  GLGKTTLSTILANEMGVNIKITSGPAIERAGDLAAILTNLKKDDLLFIDEVHRLNRAVEE 128

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ++YPAMEDF LD++VG+GPSAR++++ L RFT++ ATTR+ LLT+PL+DRFG   RL FY
Sbjct: 129 VMYPAMEDFALDIIVGKGPSARNLRLKLPRFTVVGATTRLALLTSPLRDRFGSVHRLEFY 188

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            +E +  IV+R A L    + D  A EIA R+RGTPR+  RLLRRVRDFA V     IT 
Sbjct: 189 SLEAMTDIVRRSAALLKSPMDDAGALEIARRARGTPRVVNRLLRRVRDFALVMADNHITL 248

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           E+A AAL  L ID +G D+ D R L  +   F GGPVG+ T++A  +E  DAIED+ EPY
Sbjct: 249 EVAQAALASLEIDDLGLDENDRRVLRTLIETFNGGPVGLTTLAAATAEEVDAIEDVYEPY 308

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           ++Q GFIQRTPRGR+    A+ HLG+  P 
Sbjct: 309 LLQLGFIQRTPRGRIATRRAYDHLGLSFPE 338


>gi|256618466|ref|ZP_05475312.1| holliday junction DNA helicase RuvB [Enterococcus faecalis ATCC
           4200]
 gi|256597993|gb|EEU17169.1| holliday junction DNA helicase RuvB [Enterococcus faecalis ATCC
           4200]
          Length = 338

 Score =  367 bits (942), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 174/332 (52%), Positives = 224/332 (67%), Gaps = 1/332 (0%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M + E  LS    + +A I   LRP+ L ++ GQ +    L ++IEAAK R EALDH L 
Sbjct: 1   MTEEERFLSAASQEAEASIEKSLRPQFLAQYIGQDKVKQELTIYIEAAKNRNEALDHTLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTT+A V+A E+ VN R+TSGP I +AGDL A+L  LE  DVLFIDEIHRL  
Sbjct: 61  YGPPGLGKTTMAMVIANEMNVNIRTTSGPAIERAGDLVAILNELEPGDVLFIDEIHRLPR 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LY AMEDF +D+MVG+G +A  V   L  FTL+ ATTR G+L+ PL+DRFGI   
Sbjct: 121 VVEEMLYSAMEDFYIDIMVGQGTTAHPVHFPLPPFTLVGATTRAGMLSAPLRDRFGIISH 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           + +Y+ +DLK IV R A +    + +E A EIA RSRGTPRIA RLL+RVRDFA+V    
Sbjct: 181 MEYYQEQDLKKIVLRSADIFQTEIFEEGAFEIARRSRGTPRIANRLLKRVRDFAQVQSDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I R IAD AL  L +D  G D +D + L  +   +GGGPVG+ T+S  + E  + +ED+
Sbjct: 241 KIDRAIADKALTLLQVDHQGLDYVDQKLLKTMIDLYGGGPVGLSTLSVNIGEETETVEDM 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
            EPY+IQ+GFI+RTPRGR+  P A+ H G D 
Sbjct: 301 YEPYLIQKGFIKRTPRGRIATPFAYAHFGYDY 332


>gi|224536855|ref|ZP_03677394.1| hypothetical protein BACCELL_01731 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521521|gb|EEF90626.1| hypothetical protein BACCELL_01731 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 343

 Score =  367 bits (942), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 174/330 (52%), Positives = 239/330 (72%), Gaps = 3/330 (0%)

Query: 2   MDREGLLSRN---VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M+RE    R+    S+E    + LRP + E+F+GQ +   NL++F++AA+ R EALDHVL
Sbjct: 1   MEREDFDIRDNQLTSRERDFENALRPLSFEDFSGQDKVVDNLRIFVKAARLRGEALDHVL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTL+ ++A ELGV F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS
Sbjct: 61  LHGPPGLGKTTLSNIIANELGVGFKVTSGPVLDKPGDLAGVLTSLEPNDVLFIDEIHRLS 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            +VEE LY AMED+++D+M+ +GPSARS++I+L+ FT++ ATTR GLLT PL+ RFGI +
Sbjct: 121 PVVEEYLYSAMEDYRIDIMIDKGPSARSIQIDLNPFTMVGATTRSGLLTAPLRARFGINL 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
            L +Y+ + L  I++R A +  +  +  AA EIA RSRGTPRIA  LLRRVRDFA+V  +
Sbjct: 181 HLEYYDDDVLSGIIRRSAGILNVPCSTRAASEIASRSRGTPRIANALLRRVRDFAQVKGS 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
            +I  EIA+ AL  L IDK G D++D + L  I   F GGPVG+ TI+  L E    +E+
Sbjct: 241 GSIDTEIANFALEALNIDKYGLDEIDNKILCTIIDKFKGGPVGLTTIATALGEDAGTLEE 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
           + EP++I++GF++RTPRGR +  +A++HLG
Sbjct: 301 VYEPFLIKEGFLKRTPRGREVTELAYKHLG 330


>gi|260591888|ref|ZP_05857346.1| holliday junction DNA helicase RuvB [Prevotella veroralis F0319]
 gi|260536172|gb|EEX18789.1| holliday junction DNA helicase RuvB [Prevotella veroralis F0319]
          Length = 344

 Score =  367 bits (942), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 175/327 (53%), Positives = 232/327 (70%), Gaps = 4/327 (1%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           +  E L S     E+A    LRP   ++F+GQ +   NL+VF+EAAK R E LDH L  G
Sbjct: 7   IHEERLSSAEKDFENA----LRPLKFDDFSGQQKVVENLRVFVEAAKYRGEPLDHTLLHG 62

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTL+ ++A ELGV F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS +V
Sbjct: 63  PPGLGKTTLSNIIANELGVGFKITSGPVLDKPGDLAGILTSLEPNDVLFIDEIHRLSPVV 122

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE LY AMED+++D+M+ +GPSARS++I+L+ FTL+ ATTR GLLT PL+ RFGI + L 
Sbjct: 123 EEYLYSAMEDYRIDIMIDKGPSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGINLHLE 182

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y+ E ++ I++R A L  + + DEAA EI+ RSRGTPRI   LLRRVRDFA+V    TI
Sbjct: 183 YYDPETIQRIIKRSAYLLKVPIVDEAAVEISRRSRGTPRICNSLLRRVRDFAQVKGNGTI 242

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T EIA  +L  L ID+ G D++D + L  I   F GGPVG+ TI+  + E    +E++ E
Sbjct: 243 TPEIAMMSLQSLNIDQYGLDEIDNKILLTIIDKFRGGPVGVSTIATAIGEDAGTVEEVYE 302

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLG 328
           P++I +GFI+RTPRGR+   +A+ HLG
Sbjct: 303 PFLIMEGFIKRTPRGRVATQLAYDHLG 329


>gi|317504287|ref|ZP_07962276.1| crossover junction ATP-dependent DNA helicase RuvB [Prevotella
           salivae DSM 15606]
 gi|315664599|gb|EFV04277.1| crossover junction ATP-dependent DNA helicase RuvB [Prevotella
           salivae DSM 15606]
          Length = 344

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 176/332 (53%), Positives = 235/332 (70%), Gaps = 1/332 (0%)

Query: 1   MMDREGLLSRNVSQEDAD-ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M +   +    +S E+ D  + LRP    +F GQ +   NL++F+EAAK R E LDH L 
Sbjct: 1   MTEDFDIREERISTEEKDFENALRPLRFVDFNGQKKVVENLEIFVEAAKYRGEPLDHTLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTL+ ++A ELGV F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS 
Sbjct: 61  YGPPGLGKTTLSNIIANELGVGFKITSGPVLDKPGDLAGILTSLEPNDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE LY AMED+++D+M+ +GPSARS++++L+ FTL+ ATTR G+LT PL+ RFGI + 
Sbjct: 121 VVEEYLYSAMEDYRIDIMIDKGPSARSIQLDLNPFTLVGATTRSGMLTAPLRARFGINMH 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y+ E LK I++R A L  + + DEAA EI+ RSRGTPRIA  LLRRVRDFA+V    
Sbjct: 181 LEYYDPETLKRIIRRSAMLLKVPIDDEAAIEISRRSRGTPRIANALLRRVRDFAQVKGNG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           TIT EIA   L  L ID+ G D++D + L  I   F GGPVG+ TI+  + E    +ED+
Sbjct: 241 TITNEIAHIGLQSLNIDQYGLDEIDNKILLTIIDKFKGGPVGVSTIATAIGEDAGTVEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
            EP++I +GFI+RTPRGR+  P+A++HLG + 
Sbjct: 301 YEPFLIMEGFIKRTPRGRMATPLAYEHLGRNP 332


>gi|258621409|ref|ZP_05716443.1| Holliday junction DNA helicase RuvB [Vibrio mimicus VM573]
 gi|258586797|gb|EEW11512.1| Holliday junction DNA helicase RuvB [Vibrio mimicus VM573]
          Length = 314

 Score =  367 bits (941), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 180/307 (58%), Positives = 233/307 (75%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFR 83
           P+ L ++ GQ      +++FI+AA+ R EALDH+L  GPPGLGKTTLA +VA E+GVN R
Sbjct: 7   PKKLADYQGQDHVRDQMEIFIKAAQQRQEALDHLLIFGPPGLGKTTLANIVANEMGVNIR 66

Query: 84  STSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPS 143
           +TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRLS +VEE+LYPAMED+QLD+M+GEGP+
Sbjct: 67  TTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQLDIMIGEGPA 126

Query: 144 ARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAV 203
           ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  RL +Y + DL+ IVQR A   GL++
Sbjct: 127 ARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEYYNVADLQNIVQRSAHCLGLSM 186

Query: 204 TDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQL 263
             + A E+A R+RGTPRIA RLLRRVRD+AEV     I  + AD AL  L +D  GFD +
Sbjct: 187 DSDGALEVARRARGTPRIANRLLRRVRDYAEVKGDGHICAKTADKALDMLDVDHQGFDYM 246

Query: 264 DLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIA 323
           D + L  I   F GGPVG++ ++A + E +D IED++EP++IQQG++QRTPRGR+    A
Sbjct: 247 DRKLLLAIMEKFSGGPVGLDNLAAAIGEEKDTIEDVLEPFLIQQGYLQRTPRGRIATDRA 306

Query: 324 WQHLGID 330
           + H G++
Sbjct: 307 YLHFGLE 313


>gi|221194838|ref|ZP_03567895.1| holliday junction DNA helicase RuvB [Atopobium rimae ATCC 49626]
 gi|221185742|gb|EEE18132.1| holliday junction DNA helicase RuvB [Atopobium rimae ATCC 49626]
          Length = 357

 Score =  367 bits (941), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 174/332 (52%), Positives = 238/332 (71%), Gaps = 1/332 (0%)

Query: 4   REGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
              ++S  +  ED +    LRP+TL+E+ GQ     NL+V I+AAK R E LDHV+F GP
Sbjct: 25  SNRMVSGELGPEDIEQERSLRPKTLDEYLGQSRVKENLRVLIQAAKKRDEPLDHVIFSGP 84

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA V+A E+     +TSGP I + GDLAA+LTNLE+ D+LFIDEIHRL+  VE
Sbjct: 85  PGLGKTTLAGVLAGEMNSKLHTTSGPAIERTGDLAAILTNLEEGDILFIDEIHRLNHQVE 144

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMEDF LD+++G+GP+ARS+++++ RFTL+AATTR GLLT PL+DRFGI  RL++
Sbjct: 145 EVLYPAMEDFFLDIVIGKGPAARSIRLDIPRFTLVAATTRTGLLTGPLRDRFGIAYRLDY 204

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y +E+LKTIV R A +  +++ ++ A EIA RSRGTPR+A RLL+RVRD+A+V     IT
Sbjct: 205 YSVEELKTIVLRSATILDVSIDEQGALEIASRSRGTPRLANRLLKRVRDYAQVKAGGMIT 264

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            EIA  AL    ID++G D +D+  L  + + F G PVG+ T+++ +SE    +ED+ EP
Sbjct: 265 WEIAAQALSFFDIDELGLDAMDVSVLRALCQTFHGRPVGLTTLASAVSEDPSTLEDVYEP 324

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           +++QQG I RTP+GR     A+ HL I  P +
Sbjct: 325 FLLQQGLIIRTPQGRQATQSAFNHLSIPFPSQ 356


>gi|304385247|ref|ZP_07367592.1| crossover junction ATP-dependent DNA helicase RuvB [Pediococcus
           acidilactici DSM 20284]
 gi|304328454|gb|EFL95675.1| crossover junction ATP-dependent DNA helicase RuvB [Pediococcus
           acidilactici DSM 20284]
          Length = 337

 Score =  367 bits (941), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 174/331 (52%), Positives = 228/331 (68%), Gaps = 2/331 (0%)

Query: 2   MDREGLLSRNVS--QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           MD E + S  V   QE+A+   LRP+ L ++ GQ +    L V+IEAAK R EALDHVL 
Sbjct: 1   MDDERITSSAVQGAQEEANEQSLRPQNLRQYIGQAQIKHELSVYIEAAKKREEALDHVLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA V+A E+ V  R+TSGP I K GDL ALL  L+  D+LFIDEIHRL  
Sbjct: 61  YGPPGLGKTTLAMVIANEMAVQIRTTSGPAIEKPGDLVALLNELQPGDILFIDEIHRLPK 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LY AMEDF +D++VG+GP+A  +   L  FTLI ATTR GLL+ PL+DRFGI   
Sbjct: 121 VVEEMLYSAMEDFFVDIVVGQGPTAHPIHFPLPPFTLIGATTRAGLLSAPLRDRFGIVEH 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           +N+Y  +DL  IV+R A++    + D+ A EIA RSRGTPRI+ RLL+RVRDFAEV +  
Sbjct: 181 MNYYTEDDLANIVKRSAEIFKTNIDDQGAHEIARRSRGTPRISNRLLKRVRDFAEVENDA 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I R +   +L  L +D  G DQ D + LT +   +GGGPVG+ TI+A + E  D I ++
Sbjct: 241 HIDRTLVRTSLKLLQVDDRGLDQTDKKVLTTMIELYGGGPVGLTTIAANIGEEPDTISEM 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
            EPY++Q GF++RTPRGR++   A+ HLG++
Sbjct: 301 YEPYLLQIGFLKRTPRGRMVTERAYAHLGLE 331


>gi|229586658|ref|YP_002845159.1| Holliday junction DNA helicase RuvB [Rickettsia africae ESF-5]
 gi|259495676|sp|C3PNA6|RUVB_RICAE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|228021708|gb|ACP53416.1| Holliday junction DNA helicase RuvB [Rickettsia africae ESF-5]
          Length = 342

 Score =  367 bits (941), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 196/329 (59%), Positives = 252/329 (76%), Gaps = 1/329 (0%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            +LS   S+ D ++  +RP  L+EF GQ +   NL VFI+AAK+R E LDH LF GPPGL
Sbjct: 3   NILSPEKSENDQELP-IRPSYLQEFVGQQQIKENLSVFIKAAKSRNEHLDHTLFYGPPGL 61

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLA++++ E+G NF+STSGP I K  DLAA+LTNLE  DVLFIDEIHRL+  +EE+L
Sbjct: 62  GKTTLAKIISNEIGGNFKSTSGPAILKVADLAAILTNLEKNDVLFIDEIHRLNTAIEEVL 121

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           YPAMEDF+LD+++GEG +ARSVKI L +FTLI ATTR+GLL+NPL+DRFGIP+RLNFY  
Sbjct: 122 YPAMEDFELDIIIGEGSAARSVKITLPKFTLIGATTRLGLLSNPLRDRFGIPMRLNFYNT 181

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           E+LK ++ R +KL  + +TD  + EIA RSRGTPRIA RLLRR+RDFA V     + +EI
Sbjct: 182 EELKKVLNRASKLLDIDLTDSGSEEIAKRSRGTPRIALRLLRRIRDFAAVDGKSRVDKEI 241

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           +D  L RL +D +G D  D RYL  IA N+ GGPVGIETI+A LSE RDA+E+ IEPY+I
Sbjct: 242 SDFGLNRLEVDCIGLDSNDYRYLKFIADNYNGGPVGIETIAAALSEQRDALEETIEPYLI 301

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           Q G +QRTPRGR++   A++HL + +P++
Sbjct: 302 QIGLLQRTPRGRVITIAAFEHLKMPVPNQ 330


>gi|223986043|ref|ZP_03636072.1| hypothetical protein HOLDEFILI_03378 [Holdemania filiformis DSM
           12042]
 gi|223961993|gb|EEF66476.1| hypothetical protein HOLDEFILI_03378 [Holdemania filiformis DSM
           12042]
          Length = 336

 Score =  367 bits (941), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 177/330 (53%), Positives = 232/330 (70%), Gaps = 1/330 (0%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD E LLS  + +   D S LRP+ L ++ GQ +   NLKVFI+AA  R E LDHVL  G
Sbjct: 1   MDEERLLSA-LPEAGDDESSLRPQRLTDYIGQTQLKENLKVFIQAALQRNETLDHVLLYG 59

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+G   R+ SGP I ++GDLAA+L+ LE  DVLFIDEIHRL  +V
Sbjct: 60  PPGLGKTTLAYILANEMGGKVRTASGPSIERSGDLAAILSTLEPGDVLFIDEIHRLPKMV 119

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMEDF +D++VG+    RS++++L  FTL+ ATTR G LT PL+DRFGI  +L 
Sbjct: 120 EEVLYPAMEDFCIDIVVGKDSGVRSIRLDLPPFTLVGATTRAGDLTAPLRDRFGIVNKLE 179

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y+ + L  IV R +++  +A   EA  EIA RSRGTPRIA RLLRRVRDFA+V +   I
Sbjct: 180 YYDEDQLSQIVSRTSRVLNVAAAPEAVREIAKRSRGTPRIANRLLRRVRDFAQVLNGGVI 239

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           + ++A  AL RL +D +G D +D+RYL  I   F GGPVG+E +++ +SE    +ED+ E
Sbjct: 240 SLDVAQTALDRLRVDSLGLDDVDIRYLRGIIERFRGGPVGLEALASSISEEPMTLEDVYE 299

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           PY+IQ GFI RTPRGR+  P A++HL I  
Sbjct: 300 PYLIQIGFINRTPRGRVATPKAYEHLKIAY 329


>gi|92113971|ref|YP_573899.1| Holliday junction DNA helicase B [Chromohalobacter salexigens DSM
           3043]
 gi|123387446|sp|Q1QWF8|RUVB_CHRSD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|91797061|gb|ABE59200.1| Holliday junction DNA helicase RuvB [Chromohalobacter salexigens
           DSM 3043]
          Length = 350

 Score =  367 bits (941), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 182/332 (54%), Positives = 237/332 (71%), Gaps = 1/332 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M+D + L++      E      +RPR L E+ GQ      L +FI AA+ R ++LDH L 
Sbjct: 1   MIDTDRLIAAQPQGSEVHVDHAIRPRRLAEYIGQPRVREQLDIFISAARKRGDSLDHTLV 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A E+ V+ +STSGPV+ +AGDLAA+LTNL+  DVLFIDEIHRL  
Sbjct: 61  FGPPGLGKTTLANIIAAEMDVDIKSTSGPVLERAGDLAAMLTNLQAGDVLFIDEIHRLPA 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ ATTR GLLT+PL+DRFGI  R
Sbjct: 121 SVEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPAFTLVGATTRAGLLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY +E+L  IV R A L G+    + A EIA R+RGTPRIA RLLRRVRDFAEV    
Sbjct: 181 LEFYAVEELTEIVVRSAHLLGVDAERDGAAEIARRARGTPRIANRLLRRVRDFAEVRGDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            +T  IAD AL  L +D+ G D +D R L  +   F GGPVG+++++A +SE RD IED+
Sbjct: 241 RLTAAIADQALNMLHVDRHGLDHMDRRLLMAMIEKFDGGPVGVDSLAAAISEERDTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           +EPY+IQQGF+ RT RGR++   A++H G+  
Sbjct: 301 LEPYLIQQGFMMRTARGRVVTRSAYEHFGLTP 332


>gi|170750825|ref|YP_001757085.1| Holliday junction DNA helicase RuvB [Methylobacterium radiotolerans
           JCM 2831]
 gi|170657347|gb|ACB26402.1| Holliday junction DNA helicase RuvB [Methylobacterium radiotolerans
           JCM 2831]
          Length = 344

 Score =  367 bits (941), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 226/315 (71%), Positives = 265/315 (84%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +RP +L EF GQ  A +N++VFIEAAK   +ALDHVLFVGPPGLGKTTLAQ+VAREL
Sbjct: 24  DRTIRPLSLSEFIGQRAARANMQVFIEAAKKTGQALDHVLFVGPPGLGKTTLAQIVAREL 83

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138
           GVNFRSTSGPVIAKAGDLAA LTNLE+RDVLFIDEIHRL+  VEEILYPAMED+QLDL++
Sbjct: 84  GVNFRSTSGPVIAKAGDLAAQLTNLEERDVLFIDEIHRLNPAVEEILYPAMEDYQLDLII 143

Query: 139 GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKL 198
           GEGP+ARSVKI L +FTL+ ATTR GLLT PL+DRFGIPIRL FYEI++L+ IV RGA++
Sbjct: 144 GEGPAARSVKIELPKFTLVGATTRAGLLTTPLRDRFGIPIRLEFYEIDELEQIVARGARV 203

Query: 199 TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKM 258
            GL ++ E A EIA R+RGTPRIAGRLLRRVRDFA VA A+T+TR IAD AL  L +D  
Sbjct: 204 LGLGMSAEGANEIARRARGTPRIAGRLLRRVRDFAVVAEAETVTRAIADRALQLLDVDGA 263

Query: 259 GFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRL 318
           G D +D +YL++IAR FGGGPVGIETI A LSEPRDAIED+IEPY+IQ+GF+QRTPRGR+
Sbjct: 264 GLDVMDRKYLSLIARAFGGGPVGIETIGAALSEPRDAIEDIIEPYLIQRGFVQRTPRGRV 323

Query: 319 LMPIAWQHLGIDIPH 333
           L   A++HLG+  P 
Sbjct: 324 LTRHAYRHLGLPEPE 338


>gi|315168285|gb|EFU12302.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX1341]
          Length = 338

 Score =  367 bits (941), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 175/332 (52%), Positives = 225/332 (67%), Gaps = 1/332 (0%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M + E LLS    + +A I   LRP+ L ++ GQ +    L ++IEAAK R EALDH L 
Sbjct: 1   MTEEERLLSAASQEAEASIEKSLRPQFLAQYIGQDKVKQELTIYIEAAKNRNEALDHTLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTT+A V+A E+ VN R+TSGP I +AGDL A+L  LE  DVLFIDEIHRL  
Sbjct: 61  YGPPGLGKTTMAMVIANEMNVNIRTTSGPAIERAGDLVAILNELEPGDVLFIDEIHRLPR 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LY AMEDF +D+MVG+G +A  V   L  FTL+ ATTR G+L+ PL+DRFGI   
Sbjct: 121 VVEEMLYSAMEDFYIDIMVGQGTTAHPVHFPLPPFTLVGATTRAGMLSAPLRDRFGIISH 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           + +Y+ +DLK IV R A +    + +E A EIA RSRGTPRIA RLL+RVRDFA+V    
Sbjct: 181 MEYYQEQDLKEIVLRSADIFQTEIFEEGAFEIARRSRGTPRIANRLLKRVRDFAQVQSDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I R IAD AL  L +D  G D +D + L  +   +GGGPVG+ T+S  + E  + +ED+
Sbjct: 241 KIDRVIADKALTLLQVDHQGLDYVDQKLLKTMIDLYGGGPVGLSTLSVNIGEETETVEDM 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
            EPY+IQ+GFI+RTPRGR+  P A+ H G D 
Sbjct: 301 YEPYLIQKGFIKRTPRGRIATPFAYAHFGYDY 332


>gi|311031508|ref|ZP_07709598.1| Holliday junction DNA helicase RuvB [Bacillus sp. m3-13]
          Length = 337

 Score =  367 bits (941), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 173/333 (51%), Positives = 244/333 (73%), Gaps = 2/333 (0%)

Query: 2   MDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD + ++S++ + +E +    LRP+TL+++ GQ +   NL+VFI+AAK R E LDHVL  
Sbjct: 1   MD-DRMVSQDATLEEHSLEYSLRPQTLQQYIGQDKVKENLEVFIQAAKMRQETLDHVLLY 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A E+GV  R+T+GP I + GDLAA+L+ LE  DVLFIDEIHRL   
Sbjct: 60  GPPGLGKTTLAAIIANEMGVQLRTTAGPAIERPGDLAAILSALEPGDVLFIDEIHRLHRS 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EE+LYPAMED+ LD+++G+GP+++SV+++L  FTL+ ATTRVGLLT PL+DRFG+  RL
Sbjct: 120 IEEVLYPAMEDYCLDIVIGKGPTSKSVRLDLPPFTLVGATTRVGLLTAPLRDRFGVLSRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y  E L  I  R A++  + +  +AA EI+ R+RGTPRIA RLLRRVRDFA+V    T
Sbjct: 180 EYYNEEQLTEICLRTAQILEIGLELDAATEISRRARGTPRIANRLLRRVRDFAQVLGKDT 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I+  +A  AL RL +DK+G D +D + L  I   F GGPVG++TI+A + E    IED+ 
Sbjct: 240 ISASLAKEALDRLQVDKLGLDHIDHKLLMGIIEKFRGGPVGVDTIAATIGEESHTIEDVY 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY++Q GF+QRTPRGR++  + ++H  +++P+
Sbjct: 300 EPYLLQIGFLQRTPRGRVVTDLVYRHFNMEVPN 332


>gi|157828408|ref|YP_001494650.1| Holliday junction DNA helicase RuvB [Rickettsia rickettsii str.
           'Sheila Smith']
 gi|166231549|sp|A8GRW7|RUVB_RICRS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|157800889|gb|ABV76142.1| Holliday junction DNA helicase B [Rickettsia rickettsii str.
           'Sheila Smith']
          Length = 342

 Score =  367 bits (941), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 196/329 (59%), Positives = 253/329 (76%), Gaps = 1/329 (0%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            +LS   S+ D ++  +RP  L+EF GQ +   NL VFI+AAK+R E LDH LF GPPGL
Sbjct: 3   NILSPEKSENDQELP-IRPSYLQEFVGQQQIKENLSVFIKAAKSRNEHLDHTLFYGPPGL 61

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLA++++ E+G NF+STSGP I K  DLAA+LTNLE  DVLFIDEIHRL+  VEE+L
Sbjct: 62  GKTTLAKIISNEIGGNFKSTSGPAILKVADLAAILTNLEKNDVLFIDEIHRLNTAVEEVL 121

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           YPAMEDF+LD+++GEG +ARSVKI L +FTLI ATTR+GLL+NPL+DRFGIP+RLNFY  
Sbjct: 122 YPAMEDFELDIIIGEGSAARSVKITLPKFTLIGATTRLGLLSNPLRDRFGIPMRLNFYNT 181

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           E+LK ++ R +KL  + +TD  + EIA RSRGTPRIA RLLRR+RDFA V     + +E+
Sbjct: 182 EELKKVLNRASKLLDIDLTDSGSEEIAKRSRGTPRIALRLLRRIRDFAAVEGKSRVDKEV 241

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           +D  L RL +D++G D  D RYL  IA N+ GGPVGIETI+A LSE RDA+E+ IEPY+I
Sbjct: 242 SDFGLNRLEVDRIGLDSNDYRYLKFIADNYNGGPVGIETIAAALSEQRDALEETIEPYLI 301

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           Q G +QRTPRGR++   A++HL + +P++
Sbjct: 302 QIGLLQRTPRGRVITIAAFEHLKMSVPNQ 330


>gi|53711454|ref|YP_097446.1| Holliday junction DNA helicase RuvB [Bacteroides fragilis YCH46]
 gi|60679724|ref|YP_209868.1| Holliday junction DNA helicase RuvB [Bacteroides fragilis NCTC
           9343]
 gi|253564484|ref|ZP_04841941.1| Holliday junction DNA helicase RuvB [Bacteroides sp. 3_2_5]
 gi|265764853|ref|ZP_06093128.1| Holliday junction DNA helicase RuvB [Bacteroides sp. 2_1_16]
 gi|68715391|sp|Q650B4|RUVB_BACFR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|81317203|sp|Q5LIX0|RUVB_BACFN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|52214319|dbj|BAD46912.1| Holliday junction DNA helicase RuvB [Bacteroides fragilis YCH46]
 gi|60491158|emb|CAH05906.1| putative holliday junction DNA helicase [Bacteroides fragilis NCTC
           9343]
 gi|251948260|gb|EES88542.1| Holliday junction DNA helicase RuvB [Bacteroides sp. 3_2_5]
 gi|263254237|gb|EEZ25671.1| Holliday junction DNA helicase RuvB [Bacteroides sp. 2_1_16]
 gi|301161186|emb|CBW20724.1| putative holliday junction DNA helicase [Bacteroides fragilis 638R]
          Length = 342

 Score =  367 bits (941), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 173/329 (52%), Positives = 237/329 (72%), Gaps = 1/329 (0%)

Query: 1   MMDREGLLSRNVSQEDAD-ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M +   +    ++  + D  + LRP + E+F GQ +   NL++F++AA+ RAEALDHVL 
Sbjct: 1   MEEDFNIRDHQLTSRERDFENALRPLSFEDFNGQDKVVDNLRIFVKAARLRAEALDHVLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTL+ ++A ELGV F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS 
Sbjct: 61  HGPPGLGKTTLSNIIANELGVGFKVTSGPVLDKPGDLAGVLTSLEPNDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE LY AMED+++D+M+ +GPSARS++I+L+ FTL+ ATTR GLLT PL+ RFGI + 
Sbjct: 121 VVEEYLYSAMEDYRIDIMIDKGPSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGINLH 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y+ + L  I+ R A +  +  + +AA EIA RSRGTPRIA  LLRRVRDFA+V  + 
Sbjct: 181 LEYYDDDILSNIISRSAGILDVPCSSQAAGEIASRSRGTPRIANALLRRVRDFAQVKGSG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           +I  EIA+ AL  L IDK G D++D + L  I   F GGPVG+ TI+  L E    IE++
Sbjct: 241 SIDTEIANYALEALNIDKYGLDEIDNKILCTIIDKFKGGPVGLTTIATALGEDAGTIEEV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
            EP++I++GF++RTPRGR +  +A++HLG
Sbjct: 301 YEPFLIKEGFLKRTPRGREVTELAYKHLG 329


>gi|88800181|ref|ZP_01115749.1| Holliday junction DNA helicase RuvB [Reinekea sp. MED297]
 gi|88777027|gb|EAR08234.1| Holliday junction DNA helicase RuvB [Reinekea sp. MED297]
          Length = 338

 Score =  367 bits (941), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 183/333 (54%), Positives = 241/333 (72%), Gaps = 2/333 (0%)

Query: 1   MMDREGLLSRNV--SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M++ +  ++  V   +E      +RP TL E+ GQ      +++F+ AA+ R E LDH L
Sbjct: 1   MIETDRFITPEVESPREVQHDRAIRPDTLAEYIGQPVVKEKMEIFLGAARKREEPLDHTL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA ++A E+GVN ++TSGPV+ KAGDLAA+LTNLE+ DVLFIDEIHRL+
Sbjct: 61  IFGPPGLGKTTLANIIANEMGVNIKTTSGPVLEKAGDLAAMLTNLEEGDVLFIDEIHRLA 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
             VEE+LYPAMED+QLD+M+GEGP+ARS+K+ L  FTL+ ATTR GLLT+PL+DRFGI  
Sbjct: 121 PNVEEVLYPAMEDYQLDIMIGEGPAARSIKLELPPFTLVGATTRAGLLTSPLRDRFGIVE 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           RL FY   DL  IV+R ++   + +  E A EIA RSRGTPRIA RLLRRVRD+A+V H 
Sbjct: 181 RLEFYSTADLAEIVERSSRKLSIEIDPEGAAEIARRSRGTPRIANRLLRRVRDYADVKHD 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             +T  +ADAAL  L +D+ GFD LD R L  +   FGGGP G+E I+A +SE RD +ED
Sbjct: 241 GQVTAAVADAALNMLHVDRAGFDHLDRRVLLALIEKFGGGPAGVENIAAAISEERDTLED 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           ++EPY+IQQG++ RTPRGR++  +A+ H  +  
Sbjct: 301 VVEPYLIQQGYLIRTPRGRIVTDLAYLHFDLSP 333


>gi|255010257|ref|ZP_05282383.1| Holliday junction DNA helicase RuvB [Bacteroides fragilis 3_1_12]
 gi|313148052|ref|ZP_07810245.1| holliday junction DNA helicase ruvB [Bacteroides fragilis 3_1_12]
 gi|313136819|gb|EFR54179.1| holliday junction DNA helicase ruvB [Bacteroides fragilis 3_1_12]
          Length = 342

 Score =  367 bits (941), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 173/329 (52%), Positives = 237/329 (72%), Gaps = 1/329 (0%)

Query: 1   MMDREGLLSRNVSQEDAD-ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M +   +    ++  + D  + LRP + E+F GQ +   NL++F++AA+ R EALDHVL 
Sbjct: 1   MEEDFNIRDHQLTSRERDFENALRPLSFEDFNGQDKVVDNLRIFVKAARLRGEALDHVLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTL+ ++A ELGV F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS 
Sbjct: 61  HGPPGLGKTTLSNIIANELGVGFKITSGPVLDKPGDLAGVLTSLEPNDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE LY AMED+++D+M+ +GPSARS++I+LS FTL+ ATTR GLLT PL+ RFGI + 
Sbjct: 121 VVEEYLYSAMEDYRIDIMIDKGPSARSIQIDLSPFTLVGATTRSGLLTAPLRARFGINLH 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y+ + L  I++R A +  +  + +AA EIA RSRGTPRIA  LLRRVRDFA+V  + 
Sbjct: 181 LEYYDDDILSGIIRRSAGILDVPCSSQAAGEIASRSRGTPRIANALLRRVRDFAQVKGSG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           +I  EIA+ AL  L IDK G D++D + L  I   F GGPVG+ TI+  L E    IE++
Sbjct: 241 SIDTEIANYALEALNIDKYGLDEIDNKILCTIIDKFKGGPVGLTTIATALGEDAGTIEEV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
            EP++I++GF++RTPRGR +  +A++HLG
Sbjct: 301 YEPFLIKEGFLKRTPRGREVTELAYKHLG 329


>gi|34580549|ref|ZP_00142029.1| holliday junction DNA helicase RuvB [Rickettsia sibirica 246]
 gi|28261934|gb|EAA25438.1| holliday junction DNA helicase RuvB [Rickettsia sibirica 246]
          Length = 342

 Score =  367 bits (941), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 197/329 (59%), Positives = 253/329 (76%), Gaps = 1/329 (0%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            +LS   S+ D ++  +RP  L+EF GQ +   NL VFI+AAK+R E LDH LF GPPGL
Sbjct: 3   NILSPEKSENDQELP-IRPSYLQEFVGQQQIKENLSVFIKAAKSRNEHLDHTLFYGPPGL 61

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLA++++ E+G NF+STSGP I K  DLAA+LTNLE  DVLFIDEIHRL+  VEE+L
Sbjct: 62  GKTTLAKIISNEIGGNFKSTSGPAILKVADLAAILTNLEKNDVLFIDEIHRLNTAVEEVL 121

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           YPAMEDF+LD+++GEG +ARSVKI L +FTLI ATTR+GLL+NPL+DRFGIP+RLNFY  
Sbjct: 122 YPAMEDFELDIIIGEGSAARSVKITLPKFTLIGATTRLGLLSNPLRDRFGIPMRLNFYNT 181

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           E+LK ++ R +KL  + +TD  + EIA RSRGTPRIA RLLRR+RDFA V     + +EI
Sbjct: 182 EELKKVLNRASKLLDIDLTDSGSEEIAKRSRGTPRIALRLLRRIRDFAAVDGKSRVDKEI 241

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           +D  L RL +D++G D  D RYL  IA N+ GGPVGIETI+A LSE RDA+E+ IEPY+I
Sbjct: 242 SDFGLNRLEVDRIGLDSNDYRYLKFIADNYNGGPVGIETIAAALSEQRDALEETIEPYLI 301

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           Q G +QRTPRGR++   A++HL + +P++
Sbjct: 302 QIGLLQRTPRGRVITIAAFEHLKMPVPNQ 330


>gi|297529246|ref|YP_003670521.1| Holliday junction DNA helicase RuvB [Geobacillus sp. C56-T3]
 gi|297252498|gb|ADI25944.1| Holliday junction DNA helicase RuvB [Geobacillus sp. C56-T3]
          Length = 333

 Score =  367 bits (941), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 177/332 (53%), Positives = 237/332 (71%), Gaps = 1/332 (0%)

Query: 4   REGLLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
            E L+S  V  +E A    LRP+ L E+ GQ +   NLKVFIEAAK R E LDHVL  GP
Sbjct: 2   EERLVSGEVLGEETALEPSLRPQYLHEYIGQDKIKENLKVFIEAAKLREETLDHVLLYGP 61

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++A E+GV  R+TSGP + + GDLAALLT+LE  DVLFIDEIHRL   VE
Sbjct: 62  PGLGKTTLAVIIANEMGVELRATSGPALERPGDLAALLTSLEPGDVLFIDEIHRLPRAVE 121

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMED+ LD+ +G+GP AR+++++L  FTL+ ATTR G L+ PL+DRFG+  RL +
Sbjct: 122 EVLYPAMEDYCLDIAIGKGPDARTLRLDLPPFTLVGATTRAGALSAPLRDRFGVISRLEY 181

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y ++ L  I++R A +  + +  EAA E+A R+RGTPRIA RLLRRVRDFA+V     IT
Sbjct: 182 YHVDQLAQIIERAAAILQIGIEREAALELARRARGTPRIANRLLRRVRDFAQVRGEGRIT 241

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             +A  AL RL +D++G DQ+D + L+ +   F GGPVG+ET++A + E    IE++ EP
Sbjct: 242 LPLAVEALERLQVDRLGLDQIDHKLLSAMIEKFAGGPVGLETLAAVIGEEAQTIEEVYEP 301

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           Y++Q G +QRTPRGR++ P A+ H  +++P R
Sbjct: 302 YLMQIGLLQRTPRGRVVTPAAYTHFEMEVPKR 333


>gi|182418590|ref|ZP_02949870.1| holliday junction DNA helicase RuvB [Clostridium butyricum 5521]
 gi|237668079|ref|ZP_04528063.1| Holliday junction DNA helicase RuvB [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|182377593|gb|EDT75144.1| holliday junction DNA helicase RuvB [Clostridium butyricum 5521]
 gi|237656427|gb|EEP53983.1| Holliday junction DNA helicase RuvB [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 347

 Score =  366 bits (940), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 178/331 (53%), Positives = 240/331 (72%), Gaps = 1/331 (0%)

Query: 5   EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E +++ +    D +  L LRP+ + E+ GQ +    L +FI+AAK R EALDHVL  GPP
Sbjct: 2   ERIVNPSELNSDFNSELSLRPQKINEYIGQEKVKERLDIFIKAAKNRNEALDHVLLYGPP 61

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++A+E+  + + TSGP I +AGDLAA+LT L+D DVLFIDEIHRL+  VEE
Sbjct: 62  GLGKTTLANIIAKEMTGDLKVTSGPAIERAGDLAAILTTLKDYDVLFIDEIHRLNRSVEE 121

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILYPAMED+ LD+++G+G SA+S++I+L +FTLI ATTRVG+LT PL+DRFG+   + +Y
Sbjct: 122 ILYPAMEDYVLDIVIGKGASAKSIRIDLPKFTLIGATTRVGMLTAPLRDRFGVLCAMEYY 181

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
             ++LK I+ R A + G ++T+E A EIA RSRGTPRIA RLL+RVRD++EV   K I+ 
Sbjct: 182 TNDELKEIIVRSASVFGCSITEEGAIEIARRSRGTPRIANRLLKRVRDYSEVKSNKIISL 241

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           + A  AL  L +D +GFD++D + L  I  NF GGPVGIET+S  + E    IED+ EPY
Sbjct: 242 KEAREALQLLEVDNLGFDRVDNKILEAIIDNFKGGPVGIETLSYFIGEELGTIEDVYEPY 301

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           ++QQGFI RTPRGR+    A++HLG   P +
Sbjct: 302 LLQQGFIIRTPRGRIASDKAYEHLGRVNPSK 332


>gi|300362257|ref|ZP_07058433.1| crossover junction ATP-dependent DNA helicase RuvB [Lactobacillus
           gasseri JV-V03]
 gi|300353248|gb|EFJ69120.1| crossover junction ATP-dependent DNA helicase RuvB [Lactobacillus
           gasseri JV-V03]
          Length = 339

 Score =  366 bits (940), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 174/330 (52%), Positives = 229/330 (69%), Gaps = 1/330 (0%)

Query: 3   DREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           D E ++    S+ED  I L LRP+ L ++ GQ +  S +K++I+AAK R EALDHVL  G
Sbjct: 6   DEERIIGAESSEEDETIELSLRPQLLAQYIGQDKVKSEMKIYIKAAKKRDEALDHVLLYG 65

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA V+A E+GV+ +STSGP I KAGDL ALL+ L   DVLFIDEIHRL+  V
Sbjct: 66  PPGLGKTTLAFVIANEMGVHLKSTSGPAIEKAGDLVALLSELNPGDVLFIDEIHRLAKPV 125

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMEDF +D++VGEG +  +V + L  FTLI ATTR G L+ PL+DRFGI   + 
Sbjct: 126 EEVLYSAMEDFYIDIVVGEGQTTHAVHVPLPPFTLIGATTRAGQLSAPLRDRFGIIEHMQ 185

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y ++DL+ I+QR + +    +  EAA E+A RSRGTPR+A RLL+RVRDFAEV   + I
Sbjct: 186 YYSVDDLEKIIQRSSVVFNTKIDPEAAIELARRSRGTPRVANRLLKRVRDFAEVKGEEAI 245

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           +      +L  L +D  G DQ D + L M+  N+GGGPVGI+TI+A + E  D IE++ E
Sbjct: 246 SLATTKHSLHLLEVDDEGLDQTDRKLLRMMIENYGGGPVGIKTIAANVGEDTDTIEEVYE 305

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           PY++Q+GFI RTPRGR +   A+  LG   
Sbjct: 306 PYLLQKGFITRTPRGRSVTQKAYLQLGYPP 335


>gi|91205749|ref|YP_538104.1| Holliday junction DNA helicase B [Rickettsia bellii RML369-C]
 gi|157827124|ref|YP_001496188.1| Holliday junction DNA helicase RuvB [Rickettsia bellii OSU 85-389]
 gi|123388109|sp|Q1RHZ9|RUVB_RICBR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|166231547|sp|A8GWC4|RUVB_RICB8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|91069293|gb|ABE05015.1| Holliday junction DNA helicase RuvB [Rickettsia bellii RML369-C]
 gi|157802428|gb|ABV79151.1| Holliday junction DNA helicase B [Rickettsia bellii OSU 85-389]
          Length = 342

 Score =  366 bits (940), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 204/327 (62%), Positives = 253/327 (77%), Gaps = 1/327 (0%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            +LS   SQ D ++  LRP  L+EF GQ +   NL VFI AAK+R E LDH LF GPPGL
Sbjct: 3   SILSPEKSQNDQELP-LRPSYLQEFVGQQQIKENLSVFIRAAKSRGEHLDHTLFYGPPGL 61

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLA++++ E+G NF+STSGP I KA DLAA+LTNLE  DVLFIDEIHRL+  VEE+L
Sbjct: 62  GKTTLAKIISNEIGGNFKSTSGPAILKAADLAAILTNLEKNDVLFIDEIHRLNTSVEEVL 121

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           YPAMEDF+LD+++GEGP+ARSVKINL +FTLI ATTR+GLL+NPL+DRFGIP+RLNFY  
Sbjct: 122 YPAMEDFELDIIIGEGPAARSVKINLPQFTLIGATTRLGLLSNPLRDRFGIPMRLNFYNT 181

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           E+LK ++ R +KL  + +TD  + EIA RSRGTPRIA RLLRR+RDFA V +   I +EI
Sbjct: 182 EELKKVLNRASKLLDIDLTDSGSEEIARRSRGTPRIALRLLRRIRDFAAVNNQLEIDKEI 241

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           A+  L RL +D +G D  D RYL  IA N+ GGPVGIETI+A LSE RDA+E+ IEPY+I
Sbjct: 242 ANFGLNRLEVDIIGLDSNDYRYLKFIADNYNGGPVGIETIAAALSEQRDALEETIEPYLI 301

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           Q G +QRTPRGR++   A++HL I +P
Sbjct: 302 QIGLLQRTPRGRVITATAFEHLKIPLP 328


>gi|238650927|ref|YP_002916783.1| Holliday junction DNA helicase B [Rickettsia peacockii str. Rustic]
 gi|259495677|sp|C4K2D4|RUVB_RICPU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|238625025|gb|ACR47731.1| Holliday junction DNA helicase B [Rickettsia peacockii str. Rustic]
          Length = 342

 Score =  366 bits (940), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 197/329 (59%), Positives = 253/329 (76%), Gaps = 1/329 (0%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            +LS   S+ D ++  +RP  L+EF GQ +   NL VFI+AAK+R E LDH LF GPPGL
Sbjct: 3   NILSPEKSENDQELP-IRPSYLQEFVGQQQIKENLSVFIKAAKSRNEHLDHTLFYGPPGL 61

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLA++++ E+G NF+STSGP I K  DLAA+LTNLE  DVLFIDEIHRL+  VEE+L
Sbjct: 62  GKTTLAKIISNEIGGNFKSTSGPAILKVADLAAILTNLEKNDVLFIDEIHRLNTAVEEVL 121

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           YPAMEDF+LD+++GEG +ARSVKI L +FTLI ATTR+GLL+NPL+DRFGIP+RLNFY  
Sbjct: 122 YPAMEDFELDIIIGEGSAARSVKITLPKFTLIGATTRLGLLSNPLRDRFGIPMRLNFYNT 181

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           E+LK ++ R +KL  + +TD  + EIA RSRGTPRIA RLLRR+RDFA V     + +EI
Sbjct: 182 EELKKVLNRASKLLDIDLTDSGSEEIAKRSRGTPRIALRLLRRIRDFAAVDGKSRVDKEI 241

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           +D  L RL +D++G D  D RYL  IA N+ GGPVGIETI+A LSE RDA+E+ IEPY+I
Sbjct: 242 SDFGLKRLEVDRIGLDSNDYRYLKFIADNYNGGPVGIETIAAALSEQRDALEETIEPYLI 301

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           Q G +QRTPRGR++   A++HL + +P++
Sbjct: 302 QIGLLQRTPRGRVITIAAFEHLKMPVPNQ 330


>gi|46907760|ref|YP_014149.1| Holliday junction DNA helicase RuvB [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|226224133|ref|YP_002758240.1| Holliday junction DNA helicase RuvB [Listeria monocytogenes
           Clip81459]
 gi|254824409|ref|ZP_05229410.1| holliday junction DNA helicase RuvB [Listeria monocytogenes FSL
           J1-194]
 gi|254852156|ref|ZP_05241504.1| holliday junction DNA helicase RuvB [Listeria monocytogenes FSL
           R2-503]
 gi|254931467|ref|ZP_05264826.1| ruvB [Listeria monocytogenes HPB2262]
 gi|254992898|ref|ZP_05275088.1| Holliday junction DNA helicase RuvB [Listeria monocytogenes FSL
           J2-064]
 gi|255520700|ref|ZP_05387937.1| Holliday junction DNA helicase RuvB [Listeria monocytogenes FSL
           J1-175]
 gi|300764801|ref|ZP_07074791.1| holliday junction DNA helicase RuvB [Listeria monocytogenes FSL
           N1-017]
 gi|68715516|sp|Q71ZD8|RUVB_LISMF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|259495672|sp|C1KVH9|RUVB_LISMC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|46881029|gb|AAT04326.1| holliday junction DNA helicase RuvB [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|225876595|emb|CAS05304.1| Putative Holliday junction DNA helicase RuvB [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|258605459|gb|EEW18067.1| holliday junction DNA helicase RuvB [Listeria monocytogenes FSL
           R2-503]
 gi|293583019|gb|EFF95051.1| ruvB [Listeria monocytogenes HPB2262]
 gi|293593644|gb|EFG01405.1| holliday junction DNA helicase RuvB [Listeria monocytogenes FSL
           J1-194]
 gi|300514477|gb|EFK41534.1| holliday junction DNA helicase RuvB [Listeria monocytogenes FSL
           N1-017]
 gi|328465568|gb|EGF36797.1| Holliday junction DNA helicase RuvB [Listeria monocytogenes 1816]
 gi|328474892|gb|EGF45692.1| Holliday junction DNA helicase RuvB [Listeria monocytogenes 220]
 gi|332311974|gb|EGJ25069.1| Holliday junction ATP-dependent DNA helicase ruvB [Listeria
           monocytogenes str. Scott A]
          Length = 335

 Score =  366 bits (940), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 180/331 (54%), Positives = 232/331 (70%), Gaps = 1/331 (0%)

Query: 2   MDREGLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD   + S  V  E+ +  + LRP+ L ++ GQ +  +NL VFIEAA  R EALDHVL  
Sbjct: 1   MDERIISSETVDAEEVSFETSLRPQNLSQYIGQDKVKNNLTVFIEAATLRNEALDHVLLY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA V+A E+G   ++TSGP I + GDLA +LT+LE  DVLFIDEIHRLS  
Sbjct: 61  GPPGLGKTTLAMVIAAEMGSQIKTTSGPAIERPGDLATILTSLEPGDVLFIDEIHRLSRA 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EEILYPAMED+ LD+++G GP+ARSV+++L  FTLI ATTR GLL+ PL+DRFG+   L
Sbjct: 121 IEEILYPAMEDYCLDIVIGTGPTARSVRLDLPPFTLIGATTRAGLLSAPLRDRFGVIDHL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  E L  IV R + +    + D  A EIA RSRGTPRIA RLL+RVRDFA+V    T
Sbjct: 181 EFYTEEQLTEIVLRTSNILDTKIDDLGAREIARRSRGTPRIANRLLKRVRDFAQVRGNGT 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +T ++A  AL  L +D  G D +D + L  I ++F GGPVG++TI+A + E R+ IED+ 
Sbjct: 241 VTEKLAKEALTLLQVDPRGLDTIDQKLLHTIIQSFRGGPVGLDTIAASIGEERETIEDMQ 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           EPY++Q GF+QRTPRGR+    A+ HLGI  
Sbjct: 301 EPYLLQIGFLQRTPRGRIATETAYNHLGISY 331


>gi|312622644|ref|YP_004024257.1| holliday junction DNA helicase ruvb [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203111|gb|ADQ46438.1| Holliday junction DNA helicase RuvB [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 338

 Score =  366 bits (940), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 169/323 (52%), Positives = 227/323 (70%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           E LL    S ED     LRP+ LEE+ GQ +    +K+FIEAAK R E LDHVL  GPPG
Sbjct: 2   ERLLDNKFSVEDVHEESLRPKMLEEYIGQQKVKEKIKIFIEAAKKRKEPLDHVLLYGPPG 61

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLA ++A E+GV+ + TSGP I +AGDL A+LTN+ + ++LFIDEIHRL+  +EE+
Sbjct: 62  LGKTTLANIIANEMGVDIKVTSGPAIERAGDLVAILTNIGENNILFIDEIHRLNRTIEEV 121

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPAMED ++D+++G+GPSA+++++ L  FTLI ATTR GLL++PL+DRFGI  RL++Y 
Sbjct: 122 LYPAMEDKKVDIVIGKGPSAKTIRLTLPPFTLIGATTRAGLLSSPLRDRFGIIERLDYYT 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +E+L  IV R A +    +  EA  EIA RSRGTPR+A RLLRR+RD+A V H  +IT E
Sbjct: 182 VEELSQIVMRSASILKCDIEKEACIEIAKRSRGTPRVANRLLRRLRDYAMVKHTGSITYE 241

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +A + L    +D+ G D +D   L  I   FGGGPVG+ TI+A + E    IED+ EPY+
Sbjct: 242 VAKSGLEMFEVDEYGLDLVDRNILEAIVYKFGGGPVGLSTIAAAIGEDEGTIEDIYEPYL 301

Query: 305 IQQGFIQRTPRGRLLMPIAWQHL 327
           IQ+GF+ +T RGR+    A  H+
Sbjct: 302 IQEGFLVKTARGRVATQKAISHI 324


>gi|254828234|ref|ZP_05232921.1| ruvB [Listeria monocytogenes FSL N3-165]
 gi|258600622|gb|EEW13947.1| ruvB [Listeria monocytogenes FSL N3-165]
          Length = 335

 Score =  366 bits (940), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 180/331 (54%), Positives = 233/331 (70%), Gaps = 1/331 (0%)

Query: 2   MDREGLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD   + S  V  E+ +  + LRP+ L ++ GQ +  +NL VFIEAA  R EALDHVL  
Sbjct: 1   MDERIISSETVDAEEVSFETSLRPQNLSQYIGQDKVKNNLTVFIEAATLRNEALDHVLLY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA V+A E+G   ++TSGP I + GDLA +LT+LE  DVLFIDEIHRLS  
Sbjct: 61  GPPGLGKTTLAMVIAAEMGSQIKTTSGPAIERPGDLATILTSLEPGDVLFIDEIHRLSRA 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EEILYPAMED+ LD+++G GP+ARSV+++L  FTLI ATTR GLL+ PL+DRFG+   L
Sbjct: 121 IEEILYPAMEDYCLDIVIGTGPTARSVRLDLPPFTLIGATTRAGLLSAPLRDRFGVIDHL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  E L  IV R + +    + D  A EIA RSRGTPRIA RLL+RVRDFA+V    T
Sbjct: 181 EFYTEEQLTEIVLRTSNILDTKIDDLGAREIARRSRGTPRIANRLLKRVRDFAQVRGNGT 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +T ++A  AL  L +D  G D +D + L  I ++F GGPVG++TI+A + E R+ IED+ 
Sbjct: 241 VTEKLAKEALTLLQVDPRGLDTIDQKLLHTIIQSFRGGPVGLDTIAASIGEERETIEDMQ 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           EPY++Q GF+QRTPRGR++   A+ HLGI  
Sbjct: 301 EPYLLQIGFLQRTPRGRIVTETAYNHLGISY 331


>gi|229824010|ref|ZP_04450079.1| hypothetical protein GCWU000282_01314 [Catonella morbi ATCC 51271]
 gi|229786364|gb|EEP22478.1| hypothetical protein GCWU000282_01314 [Catonella morbi ATCC 51271]
          Length = 342

 Score =  366 bits (940), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 163/332 (49%), Positives = 221/332 (66%), Gaps = 1/332 (0%)

Query: 1   MMDREGLLSRNVSQEDA-DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M   E +LS N   ED  ++  LRP  L E+ GQ +    + ++I+AAK R EALDHVL 
Sbjct: 1   MSHDERMLSGNWQPEDEGNLLSLRPSRLSEYIGQSKIKDEIAIYIQAAKQREEALDHVLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTT+A V+A E+GV   +TSGP I ++GDL ALL  L   D+LFIDEIHRL  
Sbjct: 61  YGPPGLGKTTMAMVIANEMGVGLHTTSGPAIERSGDLLALLNELSPGDILFIDEIHRLPR 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           ++EE+LY AMED+ +D+++G+GPSA  V   L  FTLI ATTR G L+ PL+DRFGI   
Sbjct: 121 VIEEVLYSAMEDYFVDIIIGQGPSAHPVHFELPPFTLIGATTRAGSLSKPLRDRFGIVSH 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           + FY  ++L  IV+R A +    +  E A EI++RSRGTPRIA R+L+RVRDFA+V    
Sbjct: 181 MQFYTPDELALIVERSADVFETRIDSEGAREISLRSRGTPRIANRILKRVRDFAQVKGQG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            +   +A  AL  L ID+ G D +D + L+ +   +GGGPVG+ T++  + E  + +ED+
Sbjct: 241 VVDLRMAQTALEVLEIDQYGLDAIDRKILSCLIEFYGGGPVGLNTLAVNIGEDTETLEDM 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
            EPY++Q GFIQRTPRGR    +A++HLG   
Sbjct: 301 YEPYLMQNGFIQRTPRGRQATALAYEHLGYAY 332


>gi|288957820|ref|YP_003448161.1| holliday junction DNA helicase [Azospirillum sp. B510]
 gi|288910128|dbj|BAI71617.1| holliday junction DNA helicase [Azospirillum sp. B510]
          Length = 362

 Score =  366 bits (940), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 201/329 (61%), Positives = 265/329 (80%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           + L+       D+  + +RP +L EF GQ +A  NL +FI+AA++R EALDHVL  GPPG
Sbjct: 11  DRLVQPGQGHGDSAEASIRPLSLAEFIGQRQARENLSIFIQAARSRNEALDHVLLFGPPG 70

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLAQ+VARELGV FR+TSGPVIA+AGDLAALLTNL+ +DVLFIDEIHRL+  VEE+
Sbjct: 71  LGKTTLAQIVARELGVGFRATSGPVIARAGDLAALLTNLQPQDVLFIDEIHRLNPAVEEV 130

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPAMEDFQLDL++GEGPSARS++I+L  FTL+ ATTR GL+T PL++RFGIP+RL FYE
Sbjct: 131 LYPAMEDFQLDLIIGEGPSARSIRIDLPPFTLVGATTRSGLITRPLRERFGIPVRLQFYE 190

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            ++L+ IV+R A + G+ +T E A EIA R+RGTPR++GRLLRRVRDFA VA  + + + 
Sbjct: 191 PDELELIVRRAAGVLGMGITPEGAREIANRARGTPRVSGRLLRRVRDFAAVAGVEEVDKR 250

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +ADAAL RL +D++G D +D RYL ++A N+GGGPVG+ET+ A L E RD +E+++EPY+
Sbjct: 251 VADAALTRLEVDRLGLDSMDRRYLGLVANNYGGGPVGVETLGAALGEQRDVLEEVVEPYL 310

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           IQQGF+QRTPRGR+L    +++LG++ P+
Sbjct: 311 IQQGFLQRTPRGRMLTDQGFRYLGLNPPN 339


>gi|84687717|ref|ZP_01015590.1| Holliday junction DNA helicase RuvB [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84664300|gb|EAQ10791.1| Holliday junction DNA helicase RuvB [Rhodobacterales bacterium
           HTCC2654]
          Length = 342

 Score =  366 bits (940), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 212/333 (63%), Positives = 262/333 (78%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M + +  L      ED D   LRP+TL +F GQ EA +NL VFIE+A+ R EA+DH LF 
Sbjct: 1   MTEPDPTLRPEPMAEDVD-RALRPQTLADFIGQAEARANLSVFIESARRRGEAMDHALFH 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++ARELGVNFR TSGPV+AKAGDLAA+LTNLE RDVLFIDEIHRL+ +
Sbjct: 60  GPPGLGKTTLAQIMARELGVNFRMTSGPVLAKAGDLAAILTNLEARDVLFIDEIHRLNPV 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPA+EDF+LDL++GEGP+AR+V+I L  FTL+ ATTR+GLLT PL+DRFGIP RL
Sbjct: 120 VEEVLYPALEDFELDLVIGEGPAARTVRIELQPFTLVGATTRLGLLTTPLRDRFGIPTRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY +E+L +IV + A   G    ++ A EIA R+RGTPRIAGRLLRRV DFA V     
Sbjct: 180 QFYTVEELHSIVTKNAIKLGAPADEDGALEIAKRARGTPRIAGRLLRRVVDFAVVEGDGR 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           ITR IAD AL RL +D +G D  D RYLT++A ++GGGPVGIET++A LSE RDA+E++I
Sbjct: 240 ITRAIADNALTRLGVDHLGLDGADRRYLTLMAEHYGGGPVGIETLAAALSESRDALEEVI 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY++QQG IQRTPRGR+L  +AW+HLG++ P 
Sbjct: 300 EPYLLQQGLIQRTPRGRMLGHLAWRHLGLEAPR 332


>gi|268318193|ref|YP_003291912.1| Holliday junction DNA helicase RuvB [Rhodothermus marinus DSM 4252]
 gi|262335727|gb|ACY49524.1| Holliday junction DNA helicase RuvB [Rhodothermus marinus DSM 4252]
          Length = 340

 Score =  366 bits (940), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 178/320 (55%), Positives = 227/320 (70%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E+     LRPR LEEF GQ +   NL+VFI AA  R E LDHVL  GPPGLGKTTLA ++
Sbjct: 15  EEDYEKALRPRRLEEFIGQPKIKDNLRVFITAALQRGETLDHVLLSGPPGLGKTTLAYII 74

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A E+G   R+TSGPV+ K  D+A LLTNL + DVLFIDEIHRLS +VEE LY AMED+++
Sbjct: 75  AEEMGARIRTTSGPVLEKPADIAGLLTNLNEGDVLFIDEIHRLSPVVEEYLYSAMEDYRI 134

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D+++  GP+ARSVK+ L  FTLI ATTR GLLT PL+ RFGI  R ++Y  EDL+ IV R
Sbjct: 135 DILIDSGPNARSVKLRLPPFTLIGATTRKGLLTAPLRARFGIEFRYDYYRTEDLQQIVLR 194

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A++ G+ + +E A EIA RSRGTPRIA RLLRR RDFAEV     ITRE+A  AL  L 
Sbjct: 195 SARILGVEIDEEGAYEIARRSRGTPRIANRLLRRTRDFAEVKGDGRITREVARMALEALD 254

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D+ G D++D+R L  +   FGGGP G+ T++  + E    +E++ EPY+IQ+GF++RTP
Sbjct: 255 VDEAGLDEMDVRLLRTLIEKFGGGPTGLNTLAVAVGEDPGTLEEVYEPYLIQEGFLERTP 314

Query: 315 RGRLLMPIAWQHLGIDIPHR 334
           RGR+    A+QH G+  P R
Sbjct: 315 RGRVATIRAYQHFGLTPPAR 334


>gi|300023942|ref|YP_003756553.1| Holliday junction DNA helicase RuvB [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299525763|gb|ADJ24232.1| Holliday junction DNA helicase RuvB [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 348

 Score =  366 bits (940), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 213/330 (64%), Positives = 267/330 (80%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           + L+S    + DA  + +RP++L+EF GQ +A +NL++FI AA+ R +ALDHVLF GPPG
Sbjct: 3   DRLVSSARKEVDAYEATIRPQSLDEFIGQEQARANLRIFITAARGRGDALDHVLFAGPPG 62

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLAQ++A+ELGV FR+TSGPVI+KAGDLAALLTNLE+RDVLFIDEIHRL+  VEEI
Sbjct: 63  LGKTTLAQIMAKELGVGFRATSGPVISKAGDLAALLTNLEERDVLFIDEIHRLNPAVEEI 122

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPAMEDFQLDLM+GEGP+ARSV+I+L +FTL+ ATTR GLLTNPL+DRFGIP+RLNFY 
Sbjct: 123 LYPAMEDFQLDLMIGEGPAARSVRIDLPKFTLVGATTRAGLLTNPLRDRFGIPVRLNFYS 182

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           + +L+ +V RGA++ G  +  + A EIA RSRGTPRIAGRLLRRVRDFA V  A  +   
Sbjct: 183 VPELELVVSRGARVLGANMASDGAREIAKRSRGTPRIAGRLLRRVRDFAAVEGAAVVNAA 242

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +AD AL  L +D  G D LD RYL  I +N+ GGPVGIET++A LSEPRDA+E+++EPY+
Sbjct: 243 VADRALKMLEVDGEGLDALDHRYLGCILKNYEGGPVGIETLAAALSEPRDALEEIVEPYL 302

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           +QQGFI RTPRGR+L   A++HLG+  P R
Sbjct: 303 LQQGFISRTPRGRVLTLKAYRHLGVSGPAR 332


>gi|319943008|ref|ZP_08017291.1| crossover junction ATP-dependent DNA helicase RuvB [Lautropia
           mirabilis ATCC 51599]
 gi|319743550|gb|EFV95954.1| crossover junction ATP-dependent DNA helicase RuvB [Lautropia
           mirabilis ATCC 51599]
          Length = 353

 Score =  366 bits (940), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 187/333 (56%), Positives = 246/333 (73%), Gaps = 2/333 (0%)

Query: 2   MDREGLLSRNVS--QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           ++ + L+       QE+     LRPR L ++ GQ +    L +FIEA++ R EALDHVL 
Sbjct: 10  IEHDRLIDAAPVSVQEEQLEKALRPRRLADYVGQRKIRQQLDIFIEASRRRQEALDHVLL 69

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A E+GVN + TSGPV+ + GDLAALLT L+  DVLFIDEIHRLS 
Sbjct: 70  FGPPGLGKTTLAHIIAAEMGVNLKQTSGPVLERPGDLAALLTGLDRNDVLFIDEIHRLSP 129

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPA+EDFQ+D+M+GEGP+ARS+K++++ FTL+ ATTR G+LTNPL+DRFGI  R
Sbjct: 130 VVEEILYPALEDFQIDIMIGEGPAARSIKLDIAPFTLVGATTRAGMLTNPLRDRFGIVSR 189

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FYE ++L++IV R A+L G  + ++ A EIA RSRGTPRIA RLLRRVRD+AE+    
Sbjct: 190 LEFYETDELQSIVLRSARLLGADIAEDGANEIARRSRGTPRIANRLLRRVRDYAEIRADG 249

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT  +AD AL  L +D +G D +D + L  I   FGGGPVG++ I+A + E RD IED+
Sbjct: 250 RITGRVADDALGMLDVDPIGLDIMDRKLLEAIIERFGGGPVGLDNIAAAIGEVRDTIEDV 309

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           IEPY+IQQG +QRTPRGR++    W+H G+ +P
Sbjct: 310 IEPYLIQQGLLQRTPRGRMVTATTWEHFGLPVP 342


>gi|284048862|ref|YP_003399201.1| Holliday junction DNA helicase RuvB [Acidaminococcus fermentans DSM
           20731]
 gi|283953083|gb|ADB47886.1| Holliday junction DNA helicase RuvB [Acidaminococcus fermentans DSM
           20731]
          Length = 338

 Score =  366 bits (940), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 176/332 (53%), Positives = 239/332 (71%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D   +++ +  ++D     LRPR L E+ GQ +   N+++FI+AA  R EALDHVL  
Sbjct: 1   MEDTNRVIAGHEQEQDGWQYSLRPRRLAEYIGQSKVKKNMEIFIQAALKRKEALDHVLLY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A EL VN R TSGP + + GDLAA+LTNL D DVLFIDEIHRL   
Sbjct: 61  GPPGLGKTTLANIIANELNVNIRITSGPALERQGDLAAILTNLSDSDVLFIDEIHRLPKT 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILY AMED+ LD+++G+GP+ARSV+++L RFTLI ATTR+G +  PL+DRFG+   L
Sbjct: 121 VEEILYSAMEDYALDIIIGKGPAARSVRLDLPRFTLIGATTRMGSIAAPLRDRFGVICHL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  E+L+ IV+R A++  +++  E A EI  RSRGTPR+A RLL+RVRDFAEV   + 
Sbjct: 181 EFYTPEELQIIVERAAEILKVSIEPEGAYEIGRRSRGTPRVANRLLKRVRDFAEVGGHEV 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           ITR++   A+ RL ID +G DQ D R L  + ++FGG PVG++T++A L+E  + +ED+ 
Sbjct: 241 ITRDVCRDAMKRLEIDDLGLDQNDRRLLHKLVKDFGGRPVGVDTLAASLNEETETLEDVY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EPY++Q G +QRTP+GR     A+Q+LG+  P
Sbjct: 301 EPYLMQLGMLQRTPKGRQATLAAYQYLGVPYP 332


>gi|15838500|ref|NP_299188.1| Holliday junction DNA helicase RuvB [Xylella fastidiosa 9a5c]
 gi|20140310|sp|Q9PC79|RUVB_XYLFA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|9106997|gb|AAF84708.1|AE004010_5 holliday junction binding protein, DNA helicase [Xylella fastidiosa
           9a5c]
          Length = 343

 Score =  366 bits (940), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 196/331 (59%), Positives = 241/331 (72%), Gaps = 1/331 (0%)

Query: 5   EGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           + ++    + ED  I   +RP+ L ++ GQ      + ++I+A KARAEALDHVL  GPP
Sbjct: 2   DRIIDTAATSEDEAIEVSIRPKRLADYLGQQPVREQMDIYIQATKARAEALDHVLIFGPP 61

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTL+ V+A ELGV  R TSGPVI KAGDLAALLTNL+  DVLFIDEIHRLS +VEE
Sbjct: 62  GLGKTTLSHVIAYELGVKLRVTSGPVIEKAGDLAALLTNLQPYDVLFIDEIHRLSPVVEE 121

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LYPAMEDFQ+D+M+GEGP+ARS+KI+L  FTLI ATTR GLLT PL+DRFGI  RL FY
Sbjct: 122 VLYPAMEDFQIDIMIGEGPAARSIKIDLPPFTLIGATTRTGLLTAPLRDRFGIVQRLEFY 181

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
             EDL  IV+R A +  +  T E A EIA R+RGTPRIA RLLRRVRD+AEV     IT 
Sbjct: 182 SPEDLARIVRRSAGILNIDCTTEGAAEIAQRARGTPRIANRLLRRVRDYAEVKAGGQITI 241

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           E+A AA+  L +D+ GFD+LD R L  I   F GGPVGIE+++A LSE R  +ED++EPY
Sbjct: 242 EVAQAAMQMLKVDQGGFDELDRRLLHTIVEYFDGGPVGIESLAASLSEERGTLEDVVEPY 301

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           +IQQGF+ RT RGR+    A+QHL +    R
Sbjct: 302 LIQQGFLVRTARGRMATDKAYQHLALQPRER 332


>gi|319900509|ref|YP_004160237.1| Holliday junction DNA helicase subunit RuvB [Bacteroides helcogenes
           P 36-108]
 gi|319415540|gb|ADV42651.1| Holliday junction DNA helicase subunit RuvB [Bacteroides helcogenes
           P 36-108]
          Length = 344

 Score =  366 bits (939), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 178/331 (53%), Positives = 237/331 (71%), Gaps = 4/331 (1%)

Query: 2   MDREGLLSRNVSQ----EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M++E    RN  Q    E    + LRP   E+F+GQ +   NL++F++AA+ R EALDHV
Sbjct: 1   MEQEDFDIRNQQQLSSKERDFENALRPLNFEDFSGQDKVVDNLRIFVKAARLRGEALDHV 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTL+ ++A ELGV F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRL
Sbjct: 61  LLHGPPGLGKTTLSNIIANELGVGFKITSGPVLDKPGDLAGVLTSLEPNDVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           S IVEE LY AMED+++D+M+ +GPSARS++I+LS FTL+ ATTR GLLT PL+ RFGI 
Sbjct: 121 SPIVEEYLYSAMEDYRIDIMIDKGPSARSIQIDLSPFTLVGATTRSGLLTAPLRARFGIN 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
           + L +Y+ E L  I++R + +  +  +  AA EIA RSRGTPRIA  LLRRVRDFA+V  
Sbjct: 181 MHLEYYDDEVLSGIIRRSSGILDVPCSTRAAAEIASRSRGTPRIANALLRRVRDFAQVKG 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
           + +I  EIA+ AL  L IDK G D++D + L  I   F GGPVG+ TI+  L E    IE
Sbjct: 241 SGSIDTEIANYALEALNIDKYGLDEIDNKILCTIIDKFKGGPVGLTTIATALGEDAGTIE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
           ++ EP++I++GF++RTPRGR +  +A++HLG
Sbjct: 301 EVYEPFLIKEGFMKRTPRGREVTELAYKHLG 331


>gi|189501748|ref|YP_001957465.1| Holliday junction DNA helicase RuvB [Candidatus Amoebophilus
           asiaticus 5a2]
 gi|238692303|sp|B3ER84|RUVB_AMOA5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|189497189|gb|ACE05736.1| hypothetical protein Aasi_0299 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 342

 Score =  366 bits (939), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 178/322 (55%), Positives = 231/322 (71%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           + E      LRP    +FTGQ +  +NLK+F++AAK R E LDHVL  GPPGLGKTTLA 
Sbjct: 15  APEKEIERALRPHVFADFTGQEKIVANLKIFVQAAKERKEPLDHVLLHGPPGLGKTTLAH 74

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++A ELG N R TSGPV+ K GDLA LLTNL   DVLFIDEIHRL+ IVEE LY AMEDF
Sbjct: 75  IIANELGANIRITSGPVLDKPGDLAGLLTNLGPYDVLFIDEIHRLNPIVEEYLYTAMEDF 134

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           ++D+M+  GPSARSV++NL+ FTLI ATTR GLLT+PL+ RFGI  RL +Y++  L  IV
Sbjct: 135 KIDIMLDSGPSARSVQLNLNPFTLIGATTRSGLLTSPLRARFGINTRLAYYDVTLLTQIV 194

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           +R +++  + + + AA E+A RSRGTPRIA  LLRR RDFA++  + TIT++IA  AL  
Sbjct: 195 KRSSQILNVPIEESAAYELARRSRGTPRIANTLLRRTRDFAQITGSGTITQQIAQMALKA 254

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D+ G D++D R L+ I   F GGPVGI TI+   SE  + IE++ EP++IQ+G++ R
Sbjct: 255 LDVDEDGLDEMDNRILSTIIEKFHGGPVGISTIATACSEESETIEEVYEPFLIQEGYLHR 314

Query: 313 TPRGRLLMPIAWQHLGIDIPHR 334
           TPRGR   P A++HL +  P R
Sbjct: 315 TPRGREATPKAYKHLKLAPPQR 336


>gi|189464949|ref|ZP_03013734.1| hypothetical protein BACINT_01293 [Bacteroides intestinalis DSM
           17393]
 gi|189437223|gb|EDV06208.1| hypothetical protein BACINT_01293 [Bacteroides intestinalis DSM
           17393]
          Length = 343

 Score =  366 bits (939), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 176/330 (53%), Positives = 239/330 (72%), Gaps = 3/330 (0%)

Query: 2   MDREGLLSRN---VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M+RE    R+    S+E    + LRP + E+F+GQ +   NL++F++AA+ R EALDHVL
Sbjct: 1   MEREDFDIRDNQLTSRERDFENALRPLSFEDFSGQDKVVDNLRIFVKAARLRGEALDHVL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTL+ ++A ELGV F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS
Sbjct: 61  LHGPPGLGKTTLSNIIANELGVGFKVTSGPVLDKPGDLAGVLTSLEPNDVLFIDEIHRLS 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            +VEE LY AMED+++D+M+ +GPSARS++I+LS FTL+ ATTR GLLT PL+ RFGI +
Sbjct: 121 PVVEEYLYSAMEDYRIDIMIDKGPSARSIQIDLSPFTLVGATTRSGLLTAPLRARFGINL 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
            L +Y+ + L  I++R A +  +  +  AA EIA RSRGTPRIA  LLRRVRDFA+V  +
Sbjct: 181 HLEYYDDDVLSGIIRRSAGILNVPCSTRAASEIASRSRGTPRIANALLRRVRDFAQVKGS 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
            +I  EIA+ AL  L IDK G D++D + L  I   F GGPVG+ TI+  L E    +E+
Sbjct: 241 GSIDTEIANFALEALNIDKYGLDEIDNKILCTIIDKFKGGPVGLTTIATALGEDAGTVEE 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
           + EP++I++GF++RTPRGR +  +A++HLG
Sbjct: 301 VYEPFLIKEGFLKRTPRGREVTELAYKHLG 330


>gi|301060141|ref|ZP_07201008.1| Holliday junction DNA helicase RuvB [delta proteobacterium NaphS2]
 gi|300445653|gb|EFK09551.1| Holliday junction DNA helicase RuvB [delta proteobacterium NaphS2]
          Length = 342

 Score =  366 bits (939), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 184/331 (55%), Positives = 244/331 (73%), Gaps = 2/331 (0%)

Query: 2   MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD E ++  ++  E+    + LRP+TL E+ GQ +   NL VFI AAK R EALDHVLF 
Sbjct: 1   MD-ERIIDPDLQPEEIPAEINLRPKTLAEYVGQTDMKRNLSVFIAAAKGREEALDHVLFH 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           G PGLGKT+L+ ++A ELGVN RSTSGPVI + GDLAA+LTNL+ +DVLFIDEIHRL+ +
Sbjct: 60  GSPGLGKTSLSHIIAGELGVNIRSTSGPVIERPGDLAAILTNLQPKDVLFIDEIHRLNHV 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILYPAMED++LD+++G+GPSAR++KI L  FTL+ ATTR GLLT PL+DRFG+ +RL
Sbjct: 120 VEEILYPAMEDYELDIIIGQGPSARTMKIPLPPFTLVGATTRAGLLTPPLRDRFGVILRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           +FYE EDL  IV R A +  + + DE A EIA R+RGTPRIA RLLRRVRDFAEV     
Sbjct: 180 DFYEPEDLYKIVVRSAGILEIPIKDEGALEIAKRARGTPRIANRLLRRVRDFAEVEADGV 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           IT+++A  AL  L +D  G D++D   +  I   F GGP+G+ ++ A + E +D IED+ 
Sbjct: 240 ITQKVASRALDMLEVDDQGLDKMDRFIMHTIIEKFDGGPIGLSSLCAAVGEEKDTIEDVY 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           EP++IQ G+I+RTP+GR+    A+ HL +++
Sbjct: 300 EPFLIQSGYIKRTPQGRVATRRAYLHLHLEV 330


>gi|126668398|ref|ZP_01739355.1| Holliday junction DNA helicase RuvB [Marinobacter sp. ELB17]
 gi|126627107|gb|EAZ97747.1| Holliday junction DNA helicase RuvB [Marinobacter sp. ELB17]
          Length = 358

 Score =  366 bits (939), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 188/330 (56%), Positives = 240/330 (72%), Gaps = 1/330 (0%)

Query: 1   MMDREGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S   +  ED     +RP  L ++ GQ      + +FI AA+ R EALDHVL 
Sbjct: 1   MIESDRLISAKTADYEDVQDRAIRPTLLADYVGQPSVREQMDIFISAARNRQEALDHVLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A E+GV  ++TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIIANEMGVAIKTTSGPVLEKAGDLAAMLTNLEAGDVLFIDEIHRLSA 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEEILYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR GLLT+PL+DRFGI  R
Sbjct: 121 AVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGLLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY   DL  I+ R A+L+ + + +  A E+A RSRGTPRIA RLLRRVRD+AEV    
Sbjct: 181 LEFYNNADLTRIILRSARLSSVHIDEAGAFEMARRSRGTPRIANRLLRRVRDYAEVRADG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT  IAD AL  L +D  GFD +D R L  +   F GGPVG+E+++A +SE R  IED+
Sbjct: 241 RITANIADLALNMLKVDDQGFDHMDRRLLLAMIEKFDGGPVGVESLAAAISEERGTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           +EP++IQQGF+ RTPRGR++   A+QH G+
Sbjct: 301 LEPFLIQQGFMLRTPRGRMVTNHAYQHFGV 330


>gi|23099491|ref|NP_692957.1| Holliday junction DNA helicase B [Oceanobacillus iheyensis HTE831]
 gi|33301657|sp|Q8EPQ6|RUVB_OCEIH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|22777720|dbj|BAC13992.1| holliday junction DNA helicase [Oceanobacillus iheyensis HTE831]
          Length = 334

 Score =  366 bits (939), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 179/329 (54%), Positives = 238/329 (72%), Gaps = 2/329 (0%)

Query: 2   MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD + ++   +  +D +I L LRP TL ++ GQ +   NL +FI+AAK R E LDHVL  
Sbjct: 1   MD-DRMIDGELQDQDVEIELSLRPSTLSQYIGQDKVKENLTIFIQAAKMREEPLDHVLLY 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA +++ E+GV FRSTSGP I +AGDLAA+L++LE  DVLFIDE+HRL   
Sbjct: 60  GPPGLGKTTLASIISYEMGVQFRSTSGPAIERAGDLAAILSSLEPGDVLFIDEVHRLPRS 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LY AMEDF +D+++G GPSARSV+I+L  FTL+ ATTR GLL+ PL+DRFG+  RL
Sbjct: 120 VEEVLYAAMEDFFIDIVIGTGPSARSVRIDLPPFTLVGATTRAGLLSAPLRDRFGVLSRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +YEI+DL  IV+R A +  + ++ EAA E+A RSRGTPRIA RLL+RVRD ++V   + 
Sbjct: 180 EYYEIKDLCNIVERTADIFNMPISSEAAIEVARRSRGTPRIANRLLKRVRDISQVKGEEE 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I+ E    AL  L +D  G D +D + LT I   F GGPVG++TI+A + E    IE++ 
Sbjct: 240 ISLESTKQALEMLQVDDAGLDHVDHKLLTGIIEGFSGGPVGLDTIAATIGEESQTIEEVY 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           EP+++Q GFIQRTPRGR++   A+ HLGI
Sbjct: 300 EPFLLQLGFIQRTPRGRVITSKAYDHLGI 328


>gi|188586411|ref|YP_001917956.1| Holliday junction DNA helicase subunit RuvB [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179351098|gb|ACB85368.1| Holliday junction DNA helicase subunit RuvB [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 341

 Score =  366 bits (939), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 181/337 (53%), Positives = 245/337 (72%), Gaps = 3/337 (0%)

Query: 1   MMDREGLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M   E +++R    ED    S LRPR  +++ GQ +  +NL++FI+AA  R+EALDHVL 
Sbjct: 1   MSSDERIITRQQVGEDYQLDSDLRPRKFDDYIGQEKVKTNLEIFIKAAVERSEALDHVLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A ++GVN   TSGP I + GDLAA+LTNLE+RDVLFIDEIHRL  
Sbjct: 61  YGPPGLGKTTLAHIIAEQMGVNIHVTSGPAIERPGDLAAILTNLEERDVLFIDEIHRLPR 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEEILYPA+EDF +D+MVG+GPSARS++++L+ FTL+ ATTR G L++PL+DRFG+  R
Sbjct: 121 SVEEILYPALEDFSIDIMVGKGPSARSLRLDLAPFTLVGATTRAGSLSSPLRDRFGVVNR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L+FY ++DL  IV R A + G+ +T+E A ++A  SRGTPRIA RLL+R RD+A+V    
Sbjct: 181 LDFYSMQDLCQIVTRSADILGIEITEEGAKKLAQSSRGTPRIANRLLKRARDYAQVKADN 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT E+AD AL  L +D  G D++D R +  I   F GGPVG++TI+A +SE  + IED+
Sbjct: 241 KITAEVADKALEMLEVDSYGLDEIDRRLMHTIYNKFSGGPVGLDTIAAAISEEAETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI--PHR 334
            EP+++Q GF+QRTPRGR+L   A  +LG+    P +
Sbjct: 301 YEPFLLQLGFLQRTPRGRVLTKAAKNYLGLSDDSPEQ 337


>gi|170739411|ref|YP_001768066.1| Holliday junction DNA helicase RuvB [Methylobacterium sp. 4-46]
 gi|168193685|gb|ACA15632.1| Holliday junction DNA helicase RuvB [Methylobacterium sp. 4-46]
          Length = 348

 Score =  366 bits (939), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 230/334 (68%), Positives = 275/334 (82%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M +   LL+    ++D D S +RP +L +FTGQ  A +NL VFIEAA+   +ALDHVLFV
Sbjct: 1   MSNPRPLLTPERREDDIDAS-IRPLSLSDFTGQRAARANLGVFIEAARRTGQALDHVLFV 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ+VARELGVNFRSTSGPVIAKAGDLAA LTNLE+RDVLFIDEIHRLS  
Sbjct: 60  GPPGLGKTTLAQIVARELGVNFRSTSGPVIAKAGDLAAQLTNLEERDVLFIDEIHRLSPA 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILYPAMED+QLDL++GEGP+ARSVKI L RFTL+AATTR GLLT PL+DRFGIPIRL
Sbjct: 120 VEEILYPAMEDYQLDLIIGEGPAARSVKIELPRFTLVAATTRAGLLTTPLRDRFGIPIRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY +++L+ IV RGA++ G+ +  + A EIA R+RGTPRIAGRLLRRVRDFA V  A T
Sbjct: 180 EFYAVDELEAIVARGARVLGIGMAADGANEIARRARGTPRIAGRLLRRVRDFAIVEEAGT 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +TR IAD AL  L +D  G D +D +YL +IAR++GGGPVG+ETI+A LSEPRDAIE++I
Sbjct: 240 VTRAIADRALRLLDVDAAGLDTMDRKYLGLIARSYGGGPVGVETIAAALSEPRDAIEEII 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           EPY++QQGF+QRTPRGRLL P A++HLG+  P R
Sbjct: 300 EPYLLQQGFVQRTPRGRLLTPHAFRHLGLPEPSR 333


>gi|270307967|ref|YP_003330025.1| Holliday junction DNA helicase subunit [Dehalococcoides sp. VS]
 gi|270153859|gb|ACZ61697.1| Holliday junction DNA helicase subunit [Dehalococcoides sp. VS]
          Length = 349

 Score =  366 bits (939), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 182/331 (54%), Positives = 239/331 (72%), Gaps = 1/331 (0%)

Query: 3   DREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           ++E L+S  ++ +DA + + LRPR L +F GQ     NL V I+AAK R EALDHVL  G
Sbjct: 4   EKERLISGKLAADDAKLDTSLRPRCLPDFIGQKRLKDNLGVAIQAAKQRGEALDHVLLYG 63

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTL+ ++A E+GVN R TSGP I + GDLAA+LTNL+  D+LFIDEIHRLS  V
Sbjct: 64  PPGLGKTTLSHIIALEMGVNIRITSGPAIERQGDLAAILTNLKPFDILFIDEIHRLSRNV 123

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMED+ LD+MVG+GP ARS+++ L  FTLI ATTR  +L+ PL+DRFG   RL+
Sbjct: 124 EEVLYPAMEDYALDIMVGKGPGARSLRLKLPHFTLIGATTRYAMLSAPLRDRFGSIFRLD 183

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY+ E +  IV+R A++ G+   +    +IA RSRGTPR+A RLLRRVRD+A+V     I
Sbjct: 184 FYDEEAIYDIVRRSARILGVEADENGLHQIACRSRGTPRVANRLLRRVRDYAQVKGNGLI 243

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T +IA  +L  L +DK+G D++D + L  I   FGGGPVG+ETI+A +SE  D I D+ E
Sbjct: 244 TGDIAAESLACLEVDKLGLDEIDHKVLKTIIHKFGGGPVGLETIAAAISEEADTIMDVYE 303

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           PY++Q GF++RTPRGR    +A+QHL I  P
Sbjct: 304 PYLLQLGFLERTPRGRQATRLAYQHLSIPYP 334


>gi|28198791|ref|NP_779105.1| Holliday junction DNA helicase B [Xylella fastidiosa Temecula1]
 gi|182681490|ref|YP_001829650.1| Holliday junction DNA helicase RuvB [Xylella fastidiosa M23]
 gi|32130011|sp|Q87D00|RUVB_XYLFT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|238691038|sp|B2I4T1|RUVB_XYLF2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|28056882|gb|AAO28754.1| holliday junction binding protein, DNA helicase [Xylella fastidiosa
           Temecula1]
 gi|182631600|gb|ACB92376.1| Holliday junction DNA helicase RuvB [Xylella fastidiosa M23]
 gi|307579944|gb|ADN63913.1| Holliday junction DNA helicase RuvB [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 343

 Score =  366 bits (939), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 196/331 (59%), Positives = 242/331 (73%), Gaps = 1/331 (0%)

Query: 5   EGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           + ++    ++ED  I   +RP+ L ++ GQ      + ++I+A KARAEALDHVL  GPP
Sbjct: 2   DRIIDSAATREDEAIEVSIRPKRLADYLGQQPVREQMDIYIQATKARAEALDHVLIFGPP 61

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTL+ V+A ELGV  R TSGPVI KAGDLAALLTNL+  DVLFIDEIHRLS +VEE
Sbjct: 62  GLGKTTLSHVIAYELGVKLRVTSGPVIEKAGDLAALLTNLQPYDVLFIDEIHRLSPVVEE 121

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LYPAMEDFQ+D+M+GEGP+ARS+KI+L  FTLI ATTR GLLT PL+DRFGI  RL FY
Sbjct: 122 VLYPAMEDFQIDIMIGEGPAARSIKIDLPPFTLIGATTRTGLLTAPLRDRFGIVQRLEFY 181

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
             EDL  IV+R A +  +  T E A EIA R+RGTPRIA RLLRRVRD+AEV     IT 
Sbjct: 182 SPEDLARIVRRSAGILNIDCTTEGAAEIAQRARGTPRIANRLLRRVRDYAEVKADGQITI 241

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           E+A AA+  L +D+ GFD+LD R L  I   F GGPVGIE+++A LSE R  +ED++EPY
Sbjct: 242 EVAQAAMQMLKVDQGGFDELDRRLLHTIVEYFDGGPVGIESLAASLSEERGTLEDVVEPY 301

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           +IQQGF+ RT RGR+    A+QHL +    R
Sbjct: 302 LIQQGFLVRTARGRMATDKAYQHLALQPRER 332


>gi|126654018|ref|ZP_01725851.1| Holliday junction DNA helicase B [Bacillus sp. B14905]
 gi|126589492|gb|EAZ83636.1| Holliday junction DNA helicase B [Bacillus sp. B14905]
          Length = 334

 Score =  366 bits (939), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 174/332 (52%), Positives = 231/332 (69%), Gaps = 1/332 (0%)

Query: 4   REGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
            E +++   S  D    L LRP+ L ++ GQ +   NL++FIEAAK R E+LDHVL  GP
Sbjct: 2   SERMMASEASGYDEQFELSLRPQRLAQYIGQHKVKENLQIFIEAAKLRQESLDHVLLYGP 61

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA V+A E+ VN R TSGP I + GDLAA+L++LE  DVLFIDEIHRL   +E
Sbjct: 62  PGLGKTTLAAVIANEMSVNVRMTSGPAIERPGDLAAILSSLEPGDVLFIDEIHRLPRAIE 121

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMEDF LD++VG+GP ARSV+++L  FTL+ ATTR G L+ PL+DRFG+ +RL +
Sbjct: 122 EVLYPAMEDFCLDIVVGKGPEARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLLRLEY 181

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y+   L  IV R A L  + +   AA E+A RSRGTPRIA RLL+RVRD+A+V     IT
Sbjct: 182 YDDISLAEIVARSAHLFEVEIEQIAAMEMARRSRGTPRIANRLLKRVRDYAQVLGDGMIT 241

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             +A  AL  L +D  G D +D + +T +   F GGPVG++T++A + E R  IED+ EP
Sbjct: 242 EGLAKQALELLQVDPRGLDHIDHKLVTNMIERFRGGPVGLDTLAASIGEERVTIEDVYEP 301

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           Y++Q G IQRTPRGR+   +A++H G + P +
Sbjct: 302 YLMQIGLIQRTPRGRVATHLAYEHFGYEYPQQ 333


>gi|239947234|ref|ZP_04698987.1| holliday junction DNA helicase RuvB [Rickettsia endosymbiont of
           Ixodes scapularis]
 gi|239921510|gb|EER21534.1| holliday junction DNA helicase RuvB [Rickettsia endosymbiont of
           Ixodes scapularis]
          Length = 342

 Score =  365 bits (938), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 199/329 (60%), Positives = 254/329 (77%), Gaps = 1/329 (0%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            +LS   S+ D ++  +RP  L+EF GQ +   NL VFI+AAK+R E LDH LF GPPGL
Sbjct: 3   NILSPEKSENDQELP-IRPSYLQEFVGQQQIKENLSVFIKAAKSRNEHLDHTLFYGPPGL 61

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLA++++ E+G NF+STSGP I KA DLAA+LTNLE  DVLFIDEIHRL+  VEE+L
Sbjct: 62  GKTTLAKIISNEIGGNFKSTSGPAILKAADLAAILTNLEKNDVLFIDEIHRLNTAVEEVL 121

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           Y AMEDF+LD+++GEGP+ARSVKI L +FTLI ATTR+GLL+NPL+DRFGIP+RLNFY  
Sbjct: 122 YSAMEDFELDIIIGEGPAARSVKITLPKFTLIGATTRLGLLSNPLRDRFGIPMRLNFYNT 181

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           E+LK ++ R +KL  + +TD  + EIA RSRGTPRIA RLLRR+RDFA V     + +EI
Sbjct: 182 EELKKVLNRASKLLDIDLTDSGSEEIAKRSRGTPRIALRLLRRIRDFAAVDGKSRVDKEI 241

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           +D  L RL +D++G D  D RYL  IA N+ GGPVGIETI+A LSE RDA+E+ IEPY+I
Sbjct: 242 SDFGLNRLEVDRIGLDSNDYRYLKFIADNYNGGPVGIETIAAALSEQRDALEETIEPYLI 301

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           Q G +QRTPRGR++   A++HL + IP++
Sbjct: 302 QIGLLQRTPRGRVITIAAFEHLKMPIPNQ 330


>gi|227529694|ref|ZP_03959743.1| Holliday junction DNA helicase B [Lactobacillus vaginalis ATCC
           49540]
 gi|227350360|gb|EEJ40651.1| Holliday junction DNA helicase B [Lactobacillus vaginalis ATCC
           49540]
          Length = 338

 Score =  365 bits (938), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 165/334 (49%), Positives = 225/334 (67%), Gaps = 2/334 (0%)

Query: 3   DREGLLSRNVS--QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           D   L+S   +   E A    LRP+ L ++ GQ +    L ++I+AAK R EALDHVL  
Sbjct: 5   DEHELVSGKATGKAESAFELTLRPQNLADYIGQTKIKHGLNIYIKAAKEREEALDHVLLY 64

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA V+  ELGVN ++TSGP I K GDL ALL  L+  DVLFIDEIHRL  +
Sbjct: 65  GPPGLGKTTLAMVITNELGVNIKTTSGPAIEKPGDLVALLNELKPGDVLFIDEIHRLPKV 124

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LY AMED+ +D+++GEGP+A  V   L  FTLI ATTR G+L+ PL+DRFGI   +
Sbjct: 125 VEEMLYSAMEDYYIDIVIGEGPTAHPVHFPLPPFTLIGATTRAGMLSAPLRDRFGIVEHM 184

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           ++Y  ++L  I+ R A +    + DE A E+A+RSRGTPRIA RLL+RVRDFA+VA   +
Sbjct: 185 SYYNQDELTRIIFRSAGIFQTKIEDEGAHELALRSRGTPRIANRLLKRVRDFAQVAGKGS 244

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I       AL  L ID  G D++D + L  +   + GGPVG++TI+A + E +  IE++ 
Sbjct: 245 IDLASVRQALKLLQIDDQGLDEIDRKLLLTMINYYHGGPVGLKTIAANIGEEKSTIEEMY 304

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           EPY++Q G++ RT RGR++   A++HLG++ P +
Sbjct: 305 EPYLLQIGYLTRTARGRMVTEAAYKHLGLEYPTK 338


>gi|295688117|ref|YP_003591810.1| Holliday junction DNA helicase Ruvb [Caulobacter segnis ATCC 21756]
 gi|295430020|gb|ADG09192.1| Holliday junction DNA helicase RuvB [Caulobacter segnis ATCC 21756]
          Length = 346

 Score =  365 bits (938), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 205/329 (62%), Positives = 250/329 (75%), Gaps = 2/329 (0%)

Query: 6   GLLSRNVSQED--ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
            ++S      D       LRP+TL EF GQ +A  NL+VFIEAAK R EALDHVL  GPP
Sbjct: 3   RVISGEPQHGDLAPADRALRPQTLAEFVGQEQAKGNLRVFIEAAKGRGEALDHVLLFGPP 62

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLAQ+VARELGVNFR+TSGPV+ K GDLAA+LTNLE  DVLFIDEIHRLS  VEE
Sbjct: 63  GLGKTTLAQIVARELGVNFRATSGPVLNKPGDLAAILTNLEANDVLFIDEIHRLSSNVEE 122

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILYPAMED  LDL++GEGPSARS++I+L+ FTL+AATTR G+L  PL+DRFGIPIRL FY
Sbjct: 123 ILYPAMEDHVLDLVIGEGPSARSIRIDLAPFTLVAATTRAGMLATPLRDRFGIPIRLEFY 182

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
              +L+ ++Q  A+  G  ++D+ A EIA R+RGTPR+AGRLLRRVRDFA    A  I R
Sbjct: 183 TPAELRHVLQHAARKMGAPLSDDGADEIAKRARGTPRVAGRLLRRVRDFATADGATVIDR 242

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           + A  AL RL +D+ G D LD RYL  +  ++GGGPVG+ETI+  ++E RDA+ED+IEPY
Sbjct: 243 KAAGLALARLEVDESGLDSLDRRYLRAMIEHYGGGPVGVETIAYAIAEARDAVEDVIEPY 302

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++QQGFIQRTPRGR+    A+ HLG+  P
Sbjct: 303 LMQQGFIQRTPRGRMACGKAYLHLGLTPP 331


>gi|218888288|ref|YP_002437609.1| Holliday junction DNA helicase RuvB [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218759242|gb|ACL10141.1| Holliday junction DNA helicase RuvB [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 334

 Score =  365 bits (938), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 180/311 (57%), Positives = 236/311 (75%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +RPR+L++F GQ E  +NLKVF+ AA  R +A+DH+LF G PGLGKTTLAQ++A EL
Sbjct: 22  DENVRPRSLDDFIGQDELRANLKVFVAAALERGQAMDHLLFYGNPGLGKTTLAQIIAAEL 81

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138
           GVN  STSGPV+ ++GDLAA+LTNL   D+LF+DEIHR+ + VEE+LYPA+EDF+LDL++
Sbjct: 82  GVNLVSTSGPVLERSGDLAAILTNLGRHDILFVDEIHRMPVAVEEVLYPALEDFKLDLVI 141

Query: 139 GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKL 198
           G+GP AR+VKI+L  FTL+ ATTR+GLL++PL+DRFGI  RL FY   DL  IV R A++
Sbjct: 142 GQGPGARTVKIDLEPFTLVGATTRIGLLSSPLRDRFGIISRLEFYSPADLARIVTRTARI 201

Query: 199 TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKM 258
            G  +T E A EI  RSRGTPRIA RLLRRVRDFA V    TIT E A AAL R+ +D+ 
Sbjct: 202 LGANLTPEGAVEIGRRSRGTPRIANRLLRRVRDFAAVHGNGTITPEQASAALGRMDVDES 261

Query: 259 GFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRL 318
           G DQ+D + L+++  +FGGGPVG++T++   SE    IED+ EPY+IQ GF++RTPRGR+
Sbjct: 262 GLDQMDRKLLSVLIEHFGGGPVGVKTLAVACSEEVRTIEDIYEPYLIQCGFLKRTPRGRV 321

Query: 319 LMPIAWQHLGI 329
               A++HL +
Sbjct: 322 ATAKAYRHLNL 332


>gi|157693177|ref|YP_001487639.1| Holliday junction DNA helicase RuvB [Bacillus pumilus SAFR-032]
 gi|167012667|sp|A8FFR2|RUVB_BACP2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|157681935|gb|ABV63079.1| crossover junction endoribonuclease subunit B [Bacillus pumilus
           SAFR-032]
          Length = 334

 Score =  365 bits (938), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 182/333 (54%), Positives = 239/333 (71%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD   + +   + E A    LRP+TL ++ GQ +   NL VFIEAA+ R E LDHVL  G
Sbjct: 1   MDERLVSTEADNHESAIEQSLRPQTLSQYIGQQKVKDNLSVFIEAARMRQETLDHVLLYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+ V  R+TSGP I + GDLAA+LT+LE  DVLFIDEIHRL   +
Sbjct: 61  PPGLGKTTLASIIANEMNVQLRTTSGPAIERPGDLAAILTSLEPGDVLFIDEIHRLQRSI 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMEDF LD+++G+G +ARSV+++L  FTL+ ATTRVGLLT PL+DRFG+  RL 
Sbjct: 121 EEVLYPAMEDFCLDIVIGKGDTARSVRLDLPPFTLVGATTRVGLLTAPLRDRFGVHARLE 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +YE  DL  IV R A+L  + +   +A EIA RSRGTPR+A RLLRRVRDFA+V    +I
Sbjct: 181 YYEQRDLAHIVSRTAELFEIGIDLRSAEEIARRSRGTPRVANRLLRRVRDFAQVLGNHSI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T +IA+ AL RL +DK+G D +D + L  +   F GGPVG++TISA + E    IED+ E
Sbjct: 241 TEDIAEDALERLQVDKLGLDHIDHKLLLSMIEKFRGGPVGLDTISATIGEESHTIEDVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           PY++Q GF+QRTPRGR++   A++H  +++P R
Sbjct: 301 PYLLQIGFLQRTPRGRVVTREAYEHFQMEVPIR 333


>gi|326566834|gb|EGE16973.1| Holliday junction DNA helicase RuvB [Moraxella catarrhalis
           103P14B1]
 gi|326569840|gb|EGE19890.1| Holliday junction DNA helicase RuvB [Moraxella catarrhalis BC8]
 gi|326571554|gb|EGE21569.1| Holliday junction DNA helicase RuvB [Moraxella catarrhalis BC7]
 gi|326575166|gb|EGE25094.1| Holliday junction DNA helicase RuvB [Moraxella catarrhalis CO72]
 gi|326576748|gb|EGE26655.1| Holliday junction DNA helicase RuvB [Moraxella catarrhalis
           101P30B1]
 gi|326577576|gb|EGE27453.1| Holliday junction DNA helicase RuvB [Moraxella catarrhalis O35E]
          Length = 329

 Score =  365 bits (938), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 192/324 (59%), Positives = 248/324 (76%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M    L+  N  ++D     +RP +L+E+ GQ +    +KVFI AA+AR EALDH L  G
Sbjct: 1   MLENRLIDPNPKKDDTADRAIRPSSLDEYIGQPKVREQMKVFIPAARARGEALDHTLIFG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A+E+G N RSTSGPV+ +AGDLAA+LTNLE  DVLFIDEIHRLS ++
Sbjct: 61  PPGLGKTTLANIIAKEMGGNLRSTSGPVLERAGDLAAILTNLEAGDVLFIDEIHRLSPVI 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILYPAMEDFQLD+M+GEGP+ARS+K++L  FTL+AATTR GLL+ PL DRFGI  RL 
Sbjct: 121 EEILYPAMEDFQLDIMIGEGPAARSIKLDLPPFTLVAATTRAGLLSAPLFDRFGIVQRLE 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY +EDL TIV+R A+L G+A+ D  A E+A RSRGTPRIA RLLRRVRD+AE+      
Sbjct: 181 FYNVEDLTTIVKRSARLLGVAMDDGGALEVAHRSRGTPRIANRLLRRVRDYAEIKGDGVA 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T +IA AAL  LA+DK G DQLD RYL+++++ F GGP G+E ++A ++E R  +ED+IE
Sbjct: 241 TADIASAALDMLAVDKQGLDQLDRRYLSVLSQRFHGGPAGVEALAAAMAEDRGTLEDVIE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQ 325
           PY++QQG+IQRT +GR++    +Q
Sbjct: 301 PYLLQQGYIQRTSKGRIISDKVFQ 324


>gi|254510650|ref|ZP_05122717.1| Holliday junction DNA helicase RuvB [Rhodobacteraceae bacterium
           KLH11]
 gi|221534361|gb|EEE37349.1| Holliday junction DNA helicase RuvB [Rhodobacteraceae bacterium
           KLH11]
          Length = 327

 Score =  365 bits (938), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 208/316 (65%), Positives = 251/316 (79%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +   LRP+ L EF GQ EA +NL++FI++A+ R EA+DH LF GPPGLGKTTLAQ++ARE
Sbjct: 5   NDRALRPQGLGEFIGQAEARANLRIFIQSARQRGEAMDHTLFHGPPGLGKTTLAQIMARE 64

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           LGVNFR TSGPV+AKAGDLAA+LTNLE RDVLFIDEIHRL+  VEE+LYPAMEDF+LDL+
Sbjct: 65  LGVNFRMTSGPVLAKAGDLAAILTNLESRDVLFIDEIHRLNPAVEEVLYPAMEDFELDLV 124

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
           +GEGP+AR+V+I L  FTL+ ATTR+GLLT PL+DRFGIP RL FY +++L  IV R A+
Sbjct: 125 IGEGPAARTVRIELQPFTLVGATTRMGLLTTPLRDRFGIPTRLQFYTVDELHEIVTRNAR 184

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257
             G    D  A EIA RSRGTPRIAGRLLRRV DFA V     ITR++AD AL RL +D 
Sbjct: 185 KLGAPADDAGAREIARRSRGTPRIAGRLLRRVVDFAIVEGDGRITRDLADGALTRLGVDN 244

Query: 258 MGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317
           +G D  D RYL +IA N+GGGPVGIET+SA LSE RD++E++IEPY++QQG IQR+PRGR
Sbjct: 245 LGLDGADRRYLKLIAENYGGGPVGIETLSAALSESRDSLEEVIEPYLLQQGLIQRSPRGR 304

Query: 318 LLMPIAWQHLGIDIPH 333
           +L   AW HLGI  P 
Sbjct: 305 MLAQKAWTHLGIAAPK 320


>gi|323142289|ref|ZP_08077121.1| Holliday junction DNA helicase RuvB [Phascolarctobacterium sp. YIT
           12067]
 gi|322413173|gb|EFY04060.1| Holliday junction DNA helicase RuvB [Phascolarctobacterium sp. YIT
           12067]
          Length = 335

 Score =  365 bits (938), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 185/333 (55%), Positives = 239/333 (71%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M   + +++    + D     LRPR L E+ GQ +   NL +FI+AA AR EALDHVL  
Sbjct: 1   MEFDDRIIAGAEQEADGWQYSLRPRLLNEYIGQTQVKDNLSIFIKAAAARHEALDHVLLF 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A EL VN R TSGP I + GDLAA+LTNL D DVLFIDEIHRLS  
Sbjct: 61  GPPGLGKTTLANIIANELNVNIRVTSGPAIERQGDLAAILTNLGDNDVLFIDEIHRLSKT 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILY AMEDF LD+++G+GP+ARSV+++L  FTLI ATTR+G +  PL+DRFG+   L
Sbjct: 121 VEEILYSAMEDFALDIIIGKGPAARSVRLDLPHFTLIGATTRLGAIAAPLRDRFGVQCCL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY+ E+L+ I+ R A++  + +  E A EIA RSRGTPRIA RLL+RVRDFA+V   + 
Sbjct: 181 EFYKPEELQFIITRAAEILNVKIDKEGAMEIARRSRGTPRIANRLLKRVRDFAQVLGVEV 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I R++AD AL +L +D+ GFD+ D + LT I + FGGGPVGIETI+A +SE    IED+I
Sbjct: 241 IDRQLADEALAKLEVDRYGFDRNDRKILTTIVKTFGGGPVGIETIAAAVSEESSTIEDVI 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY++QQG + RT RGR+     +++LGI  P 
Sbjct: 301 EPYLMQQGMLNRTSRGRMATRETYRYLGIPFPE 333


>gi|261855149|ref|YP_003262432.1| Holliday junction DNA helicase RuvB [Halothiobacillus neapolitanus
           c2]
 gi|261835618|gb|ACX95385.1| Holliday junction DNA helicase RuvB [Halothiobacillus neapolitanus
           c2]
          Length = 348

 Score =  365 bits (938), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 183/331 (55%), Positives = 237/331 (71%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M    + + +V++++A    LRP+ L ++ GQ      +++FI AA+ R EALDHVL  G
Sbjct: 1   MTDRVITAESVTEDEAIERALRPKRLVDYVGQPAVVEQMEIFIPAARQRGEALDHVLIFG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+GV  + TSGPV+ + GDLAALLTNLE  DVLFIDEIHRLS +V
Sbjct: 61  PPGLGKTTLANIIAHEMGVGLKQTSGPVLERPGDLAALLTNLEPNDVLFIDEIHRLSAVV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILYPAMED Q+D+M+GEGP+ARS+K++L  FTL+ ATTR G+LT PL+DRFGI  RL 
Sbjct: 121 EEILYPAMEDHQIDIMIGEGPAARSIKLDLPPFTLVGATTRAGMLTGPLRDRFGIIQRLE 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY + DL  IV R A+L G+++    A EIA R+RGTPRIA RLLRRVRDFAEV    T+
Sbjct: 181 FYSVADLTRIVSRSAQLMGVSIDAGGAQEIAARARGTPRIANRLLRRVRDFAEVRGNGTV 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
            + +A+AAL  L +D  GFDQ D R L  +   F GGPVG++ I+A + E RD IED++E
Sbjct: 241 DQPMANAALDLLQVDARGFDQQDRRLLEALIHKFDGGPVGLDNIAAAIGEARDTIEDVLE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           P++IQQGF+ RT RGR+     + H G   P
Sbjct: 301 PFLIQQGFLVRTARGRMATRQTYAHFGFRPP 331


>gi|150026163|ref|YP_001296989.1| Holliday junction DNA helicase B [Flavobacterium psychrophilum
           JIP02/86]
 gi|166231492|sp|A6H1G3|RUVB_FLAPJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|149772704|emb|CAL44187.1| Holliday junction DNA helicase RuvB [Flavobacterium psychrophilum
           JIP02/86]
          Length = 340

 Score =  365 bits (938), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 182/329 (55%), Positives = 236/329 (71%), Gaps = 1/329 (0%)

Query: 1   MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M +     ++  + E+ D+   LRP + ++FTGQ +   NLK+F++AA  R EALDH LF
Sbjct: 1   MNENLDPTNQKYNPEELDLEKKLRPLSFDDFTGQEQVLENLKIFVQAANLRGEALDHTLF 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A ELGV  + TSGPV+ K GDLA LLTNL++RDVLFIDEIHRLS 
Sbjct: 61  HGPPGLGKTTLANILANELGVGIKITSGPVLDKPGDLAGLLTNLDERDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           IVEE LY AMEDF++D+M+  GP+ARSV+INLS FTL+ ATTR GLLT P++ RFGI  R
Sbjct: 121 IVEEYLYSAMEDFKIDIMIESGPNARSVQINLSPFTLVGATTRSGLLTAPMRARFGIQSR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y  E L TIVQR + +  + +T EAA EIA RSRGTPRIA  +LRRVRDFA++    
Sbjct: 181 LQYYNAELLTTIVQRSSSILKMPITMEAAIEIAGRSRGTPRIANAMLRRVRDFAQIKGNG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           +I  EIA  AL  L +D  G D++D + L  I   F GGPVG+ T++  +SE  + IE++
Sbjct: 241 SIDIEIAKFALNALHVDAHGLDEMDNKILNTIIDKFKGGPVGLSTLATAVSESSETIEEV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
            EP++IQ+GFI RTPRGR +   A++HLG
Sbjct: 301 YEPFLIQEGFIMRTPRGREVTEKAYKHLG 329


>gi|312134959|ref|YP_004002297.1| holliday junction DNA helicase ruvb [Caldicellulosiruptor
           owensensis OL]
 gi|311775010|gb|ADQ04497.1| Holliday junction DNA helicase RuvB [Caldicellulosiruptor
           owensensis OL]
          Length = 338

 Score =  365 bits (938), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 166/322 (51%), Positives = 225/322 (69%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            LL    S ED     LRP+TLE++ GQ +    +K+FIEAAK R E LDHVL  GPPGL
Sbjct: 3   RLLDNKFSVEDVHEESLRPKTLEDYIGQQKVKEKVKIFIEAAKKRKEPLDHVLLYGPPGL 62

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLA ++A E+GV+ + TSGP I +AGDL A+LTN+ + ++LFIDEIHRL+  +EE+L
Sbjct: 63  GKTTLANIIANEMGVDIKVTSGPAIERAGDLVAILTNIGENNILFIDEIHRLNRTIEEVL 122

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           YPAMED ++D+++G+GPSA+++++ L  FTLI ATTR GLL++PL+DRFGI  RL++Y +
Sbjct: 123 YPAMEDKKVDIVIGKGPSAKTIRLTLPPFTLIGATTRAGLLSSPLRDRFGIIERLDYYTV 182

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           E+L  IV R A +    +  EA  EIA RSRGTPR+A RLLRR+RD+A V +  +IT E+
Sbjct: 183 EELSQIVMRSASILKCDIEKEACIEIAKRSRGTPRVANRLLRRLRDYAMVKYTGSITYEV 242

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           A   L    +D+ G D +D   L  I   F GGPVG+ TI+A + E    IED+ EPY+I
Sbjct: 243 AKNGLEMFEVDEYGLDLVDRNILEAIVYKFSGGPVGLSTIAAAIGEDEGTIEDIYEPYLI 302

Query: 306 QQGFIQRTPRGRLLMPIAWQHL 327
           Q+GF+ +T RGR+    A  H+
Sbjct: 303 QEGFLVKTARGRVATQKAINHI 324


>gi|293375247|ref|ZP_06621531.1| Holliday junction DNA helicase RuvB [Turicibacter sanguinis PC909]
 gi|325840657|ref|ZP_08167108.1| Holliday junction DNA helicase RuvB [Turicibacter sp. HGF1]
 gi|292646145|gb|EFF64171.1| Holliday junction DNA helicase RuvB [Turicibacter sanguinis PC909]
 gi|325490221|gb|EGC92555.1| Holliday junction DNA helicase RuvB [Turicibacter sp. HGF1]
          Length = 335

 Score =  365 bits (938), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 180/331 (54%), Positives = 236/331 (71%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M  E L++ +    D     LRP  L ++ GQ     NL++FIEAAK R E+LDHVL  G
Sbjct: 3   MTEERLVTPDEVMGDESELSLRPERLNQYIGQTAVKENLRIFIEAAKNRNESLDHVLLFG 62

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+GVN ++TSGP+I ++GDLAA+L+ LE  DVLFIDEIHRL   +
Sbjct: 63  PPGLGKTTLATIIANEMGVNIKTTSGPMIERSGDLAAILSVLEPGDVLFIDEIHRLPKSI 122

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMED+ LD++VG+  SARS++++L+ FTL+ ATTR G L+ PL+DRFG+  RL 
Sbjct: 123 EEVLYPAMEDYVLDIVVGKDESARSIRVDLAPFTLVGATTRAGDLSAPLRDRFGVINRLE 182

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y  E L +IV+R A +  + + D AA E+A RSRGTPRIA RL RRVRD+AEV     I
Sbjct: 183 YYTEEQLTSIVKRTAIVYEIEMDDLAALELARRSRGTPRIANRLFRRVRDYAEVVGNGVI 242

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T +IA  AL RL ID++G D +D +YL  I   FGGGP GIE I+A + E    +ED+ E
Sbjct: 243 THDIAKLALDRLDIDELGLDYVDHKYLRGIIERFGGGPCGIEAIAASIGEESQTLEDVYE 302

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           PY++Q GFI+RTPRGR++ P A  HLGI+ P
Sbjct: 303 PYLLQMGFIKRTPRGRVITPQACHHLGIEYP 333


>gi|160882933|ref|ZP_02063936.1| hypothetical protein BACOVA_00895 [Bacteroides ovatus ATCC 8483]
 gi|237720595|ref|ZP_04551076.1| holliday junction DNA helicase ruvB [Bacteroides sp. 2_2_4]
 gi|260172636|ref|ZP_05759048.1| Holliday junction DNA helicase RuvB [Bacteroides sp. D2]
 gi|293373382|ref|ZP_06619738.1| Holliday junction DNA helicase RuvB [Bacteroides ovatus SD CMC 3f]
 gi|299145305|ref|ZP_07038373.1| holliday junction DNA helicase RuvB [Bacteroides sp. 3_1_23]
 gi|315920926|ref|ZP_07917166.1| holliday junction DNA helicase ruvB [Bacteroides sp. D2]
 gi|156111616|gb|EDO13361.1| hypothetical protein BACOVA_00895 [Bacteroides ovatus ATCC 8483]
 gi|229450346|gb|EEO56137.1| holliday junction DNA helicase ruvB [Bacteroides sp. 2_2_4]
 gi|292631668|gb|EFF50290.1| Holliday junction DNA helicase RuvB [Bacteroides ovatus SD CMC 3f]
 gi|298515796|gb|EFI39677.1| holliday junction DNA helicase RuvB [Bacteroides sp. 3_1_23]
 gi|313694801|gb|EFS31636.1| holliday junction DNA helicase ruvB [Bacteroides sp. D2]
          Length = 343

 Score =  365 bits (938), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 176/330 (53%), Positives = 237/330 (71%), Gaps = 3/330 (0%)

Query: 2   MDREGLLSRN---VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M++E    R     S+E    + LRP + E+F+GQ +   NL++F++AA+ R EALDHVL
Sbjct: 1   MEQEDFNIREHQLTSKERDFENALRPLSFEDFSGQDKVVENLRIFVKAARLRGEALDHVL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTL+ ++A ELGV F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS
Sbjct: 61  LHGPPGLGKTTLSNIIANELGVGFKVTSGPVLDKPGDLAGVLTSLEPNDVLFIDEIHRLS 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            +VEE LY AMED+++D+M+ +GPSARS++I+L+ FTL+ ATTR GLLT PL+ RFGI +
Sbjct: 121 PVVEEYLYSAMEDYRIDIMIDKGPSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGINL 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
            L +Y+ + L  I++R A +  +  +  AA EIA RSRGTPRIA  LLRRVRDFA+V  +
Sbjct: 181 HLEYYDDDILSNIIRRSASILDVPCSVRAASEIASRSRGTPRIANALLRRVRDFAQVKGS 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
            +I  EIA  AL  L IDK G D++D + L  I   F GGPVGI TI+  L E    IE+
Sbjct: 241 GSIDTEIAQFALEALNIDKYGLDEIDNKILCTIIDKFKGGPVGITTIATALGEDAGTIEE 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
           + EP++I++GF++RTPRGR +  +A++HLG
Sbjct: 301 VYEPFLIKEGFMKRTPRGREVTELAYKHLG 330


>gi|89053457|ref|YP_508908.1| Holliday junction DNA helicase RuvB [Jannaschia sp. CCS1]
 gi|123401320|sp|Q28TS9|RUVB_JANSC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|88863006|gb|ABD53883.1| Holliday junction DNA helicase RuvB [Jannaschia sp. CCS1]
          Length = 344

 Score =  365 bits (938), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 211/337 (62%), Positives = 264/337 (78%), Gaps = 3/337 (0%)

Query: 1   MMDREGLLSRNVSQEDA---DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M D +  L  +   ED    D   LRP++L++FTGQ EA +NL+VFIE+A+ R EA+DHV
Sbjct: 1   MTDSDPTLRPDRLPEDVQATDDRALRPQSLDDFTGQEEARANLRVFIESARRRGEAMDHV 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           LF GPPGLGKTTLAQ++A+ELGV FR TSGPV+AKAGDLAA+LTNLE +DVLFIDEIHRL
Sbjct: 61  LFHGPPGLGKTTLAQIMAKELGVGFRMTSGPVLAKAGDLAAILTNLEAKDVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           + +VEEILYPA+EDF+LDL++GEGP+AR+V+I L  FTL+ ATTR+GLLT PL+DRFGIP
Sbjct: 121 NPVVEEILYPALEDFELDLVIGEGPAARTVRIELQPFTLVGATTRLGLLTTPLRDRFGIP 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            RLNFY I +L  IV RGA+L G+    +   EIA R+RGTPRIAGRLLRRV DFA V  
Sbjct: 181 TRLNFYTIAELDQIVARGARLAGIEADPKGTAEIAKRARGTPRIAGRLLRRVIDFAVVEG 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
              +T+ IAD+AL RL +D +G D  D RYL++IA N+ GGPVGIET++A L+EPRDA+E
Sbjct: 241 DGRLTQGIADSALTRLGVDDLGLDGADRRYLSLIAENYHGGPVGIETVAAALAEPRDALE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           ++IEP+++QQG I RTPRGR+L    W HLG+  P R
Sbjct: 301 EVIEPFLLQQGLIARTPRGRMLAHKGWTHLGMAPPKR 337


>gi|327403171|ref|YP_004344009.1| Holliday junction ATP-dependent DNA helicase ruvB [Fluviicola
           taffensis DSM 16823]
 gi|327318679|gb|AEA43171.1| Holliday junction ATP-dependent DNA helicase ruvB [Fluviicola
           taffensis DSM 16823]
          Length = 340

 Score =  365 bits (938), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 175/332 (52%), Positives = 234/332 (70%), Gaps = 2/332 (0%)

Query: 2   MDREGLL--SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M+ E     S   + E     +LRP+ L++F GQ +A  NL++F++AA  R+E LDHVL 
Sbjct: 1   MEDESFDYRSEASNPEKEYDKVLRPKLLDDFAGQPQAVENLEIFVKAAIQRSEPLDHVLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +++ EL V F+ TSGPV+ K GDLA LLTNL   DVLFIDEIHRLS 
Sbjct: 61  HGPPGLGKTTLAHIISNELNVGFKVTSGPVLDKPGDLAGLLTNLGHGDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE LY AMED+ +D+++  G +ARSV+I+L+ FTLI ATTR GLLT PL+ RFGI +R
Sbjct: 121 VVEEYLYSAMEDYCIDILIDSGANARSVQISLNPFTLIGATTRSGLLTAPLRARFGINLR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           LN+Y++E L +I++R A+L  + + ++AA EI+ RSRGTPRIA  +LRRVRDFA+V    
Sbjct: 181 LNYYDVETLASIIERSAELLNIPIQEQAAFEISRRSRGTPRIANAILRRVRDFAQVKGDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           TIT EI   AL  L +DK G D++D R L  +   F GGPVG+ TI+  + E    +E++
Sbjct: 241 TITLEITKHALDALNVDKYGLDEMDNRILKTLIDKFKGGPVGLTTIATAIGENAGTLEEV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
            EP++IQ+GF+ RTPRGR     A+ HLG D+
Sbjct: 301 YEPFLIQEGFLMRTPRGRKATEKAFIHLGFDM 332


>gi|150390103|ref|YP_001320152.1| Holliday junction DNA helicase B [Alkaliphilus metalliredigens
           QYMF]
 gi|172052478|sp|A6TQM5|RUVB_ALKMQ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|149949965|gb|ABR48493.1| Holliday junction DNA helicase RuvB [Alkaliphilus metalliredigens
           QYMF]
          Length = 336

 Score =  365 bits (938), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 175/329 (53%), Positives = 235/329 (71%), Gaps = 1/329 (0%)

Query: 3   DREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           + E +++    +ED  +   LRP+ L ++ GQ      LK+FIEAAK R E LDHVL  G
Sbjct: 5   EEERMITNQPKEEDLILENGLRPKFLVDYIGQNSVKERLKIFIEAAKQRQEPLDHVLLYG 64

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+ VN + TSGP I + GDLAA+LTNL   DVLFIDEIHRL+  V
Sbjct: 65  PPGLGKTTLANIIANEMNVNIKITSGPAIERPGDLAAILTNLAANDVLFIDEIHRLNRTV 124

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMEDF LD+++G+GPSARS++++LS+FTLI ATTR G L++PL+DRFG+  +L 
Sbjct: 125 EEVLYPAMEDFALDIIIGKGPSARSIRLDLSQFTLIGATTRAGQLSSPLRDRFGVICKLE 184

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
            Y  + L  IV+R A++    + DE A EIA RSRGTPRIA RLLRRVRD+A+V     I
Sbjct: 185 LYNNKQLTAIVKRSARILDAYIDDEGATEIASRSRGTPRIANRLLRRVRDYAQVKSDGRI 244

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T+ +A+ AL+ L +D +G D  D + +  +  NF GGPVG++T++A   E R+ IED+ E
Sbjct: 245 TKRVAEEALILLEVDSLGLDNTDKKMIETMIYNFNGGPVGLDTLAATTGEERNTIEDVYE 304

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           PY++Q GFI RTPRGR++M  A++H  I 
Sbjct: 305 PYLLQMGFINRTPRGRIVMQKAYEHFNIP 333


>gi|300112853|ref|YP_003759428.1| Holliday junction DNA helicase RuvB [Nitrosococcus watsonii C-113]
 gi|299538790|gb|ADJ27107.1| Holliday junction DNA helicase RuvB [Nitrosococcus watsonii C-113]
          Length = 348

 Score =  365 bits (938), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 187/332 (56%), Positives = 240/332 (72%), Gaps = 1/332 (0%)

Query: 1   MMDREGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M    GL+S   S+ E A    LRP  L ++ GQ +    ++VFI AA+AR EALDHVL 
Sbjct: 1   MTLSRGLVSPQESRGEKAVEFSLRPSKLADYIGQPQVQEQMEVFIPAARARHEALDHVLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTL+ ++A EL VN R TSGPV+ + GDLAALLTNLE RDVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLSHIIANELEVNLRQTSGPVLERPGDLAALLTNLEPRDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED Q+D+M+GEGP+ARS+K++L  FTL+ ATTR GLLT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDRQIDIMIGEGPAARSIKLDLVPFTLVGATTRAGLLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY ++ L  IV+R A++ G+ +  E A EIA RSRGTPRIA RLLRRVRD+AE+    
Sbjct: 181 LEFYAVDHLVLIVERTARILGMTMEKEGALEIARRSRGTPRIANRLLRRVRDYAEIKVDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            +TR++A  AL  L +D  GFD +D + L  +   F GGPVG+++++A + E R  IED+
Sbjct: 241 RVTRQVAQKALDLLDVDSHGFDTMDRKLLLAMIEKFDGGPVGVDSLAAAIGEERGTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           IEP+++QQGFI RTPRGR     A+ H G+  
Sbjct: 301 IEPFLLQQGFIMRTPRGRTATRHAYLHFGLKP 332


>gi|71275801|ref|ZP_00652085.1| Holliday junction DNA helicase RuvB [Xylella fastidiosa Dixon]
 gi|71900400|ref|ZP_00682533.1| Holliday junction DNA helicase RuvB [Xylella fastidiosa Ann-1]
 gi|170730219|ref|YP_001775652.1| Holliday junction DNA helicase RuvB [Xylella fastidiosa M12]
 gi|238687918|sp|B0U2E3|RUVB_XYLFM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|71163379|gb|EAO13097.1| Holliday junction DNA helicase RuvB [Xylella fastidiosa Dixon]
 gi|71729832|gb|EAO31930.1| Holliday junction DNA helicase RuvB [Xylella fastidiosa Ann-1]
 gi|167965012|gb|ACA12022.1| holliday junction binding protein, DNA helicase [Xylella fastidiosa
           M12]
          Length = 343

 Score =  365 bits (937), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 196/331 (59%), Positives = 242/331 (73%), Gaps = 1/331 (0%)

Query: 5   EGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           + ++    ++ED  I   +RP+ L ++ GQ      + ++I+A KARAEALDHVL  GPP
Sbjct: 2   DRIIDTAATREDEAIEVSIRPKRLADYLGQQPVREQMDIYIQATKARAEALDHVLIFGPP 61

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTL+ V+A ELGV  R TSGPVI KAGDLAALLTNL+  DVLFIDEIHRLS +VEE
Sbjct: 62  GLGKTTLSHVIAYELGVKLRVTSGPVIEKAGDLAALLTNLQPYDVLFIDEIHRLSPVVEE 121

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LYPAMEDFQ+D+M+GEGP+ARS+KI+L  FTLI ATTR GLLT PL+DRFGI  RL FY
Sbjct: 122 VLYPAMEDFQIDIMIGEGPAARSIKIDLPPFTLIGATTRTGLLTAPLRDRFGIVQRLEFY 181

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
             EDL  IV+R A +  +  T E A EIA R+RGTPRIA RLLRRVRD+AEV     IT 
Sbjct: 182 SPEDLARIVRRSAGILNIDCTTEGAAEIAQRARGTPRIANRLLRRVRDYAEVKAGGQITI 241

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           E+A AA+  L +D+ GFD+LD R L  I   F GGPVGIE+++A LSE R  +ED++EPY
Sbjct: 242 EVAQAAMQMLKVDQGGFDELDRRLLHTIVEYFDGGPVGIESLAASLSEERGTLEDVVEPY 301

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           +IQQGF+ RT RGR+    A+QHL +    R
Sbjct: 302 LIQQGFLVRTARGRMATDKAYQHLALQPRER 332


>gi|313204404|ref|YP_004043061.1| holliday junction DNA helicase subunit ruvb [Paludibacter
           propionicigenes WB4]
 gi|312443720|gb|ADQ80076.1| Holliday junction DNA helicase subunit RuvB [Paludibacter
           propionicigenes WB4]
          Length = 338

 Score =  365 bits (937), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 174/327 (53%), Positives = 231/327 (70%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M+    +  N   E    + LRP T  +F+GQ +   NLK+F++AA+ R E+LDHVL  G
Sbjct: 1   MEETFDIRNNQKGEKEFENALRPLTFSDFSGQNKIVENLKIFVQAARMRTESLDHVLLHG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTL+ ++A EL V F+ TSGPV+ K GDLA LLT+LE  DVLFIDEIHRLS IV
Sbjct: 61  PPGLGKTTLSNIIANELNVGFKITSGPVLDKPGDLAGLLTSLEVNDVLFIDEIHRLSPIV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE LY AMED+++D+M+ +GPSARS+++ L+ FTLI ATTR GLLT PL+ RFGI     
Sbjct: 121 EEYLYSAMEDYRIDIMIDKGPSARSIQLELNPFTLIGATTRSGLLTAPLRARFGINCHFE 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y+IE +  I++R ++L  + +  +AA EIA RSRGTPRIA  LLRRVRDFA+V    +I
Sbjct: 181 YYDIEVITEIIKRSSRLLNVEIGHKAAVEIAGRSRGTPRIANALLRRVRDFAQVKGNGSI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
             EIA  AL  L IDK G D++D + L  I   F GGPVG+ TI+  L E    IE++ E
Sbjct: 241 DVEIACYALEALNIDKYGLDEIDNKILNTIIDKFSGGPVGLTTIATALGEDAGTIEEVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLG 328
           P++I++GF++RTPRGR +  +A++HLG
Sbjct: 301 PFLIKEGFMKRTPRGREVTELAYKHLG 327


>gi|255690278|ref|ZP_05413953.1| holliday junction DNA helicase RuvB [Bacteroides finegoldii DSM
           17565]
 gi|260624181|gb|EEX47052.1| holliday junction DNA helicase RuvB [Bacteroides finegoldii DSM
           17565]
          Length = 344

 Score =  365 bits (937), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 176/330 (53%), Positives = 236/330 (71%), Gaps = 3/330 (0%)

Query: 2   MDREGLLSRN---VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M++E    R     S+E    + LRP + E+F+GQ +   NL++F++AA+ R EALDHVL
Sbjct: 1   MEQEDFNIREHQLTSKERDFENALRPLSFEDFSGQDKVVENLRIFVKAARLRGEALDHVL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTL+ ++A ELGV F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS
Sbjct: 61  LHGPPGLGKTTLSNIIANELGVGFKVTSGPVLDKPGDLAGVLTSLEPNDVLFIDEIHRLS 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            +VEE LY AMED+++D+M+ +GPSARS++I+L+ FTL+ ATTR GLLT PL+ RFGI +
Sbjct: 121 PVVEEYLYSAMEDYRIDIMIDKGPSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGINL 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
            L +Y+ + L  I++R A +  +  +  AA EIA RSRGTPRIA  LLRRVRDFA+V   
Sbjct: 181 HLEYYDDDILSNIIRRSASILDVPCSVRAASEIASRSRGTPRIANALLRRVRDFAQVKGT 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
            +I  EIA  AL  L IDK G D++D + L  I   F GGPVGI TI+  L E    IE+
Sbjct: 241 GSIDTEIAQFALEALNIDKYGLDEIDNKILCTIIDKFKGGPVGITTIATALGEDAGTIEE 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
           + EP++I++GF++RTPRGR +  +A++HLG
Sbjct: 301 VYEPFLIKEGFMKRTPRGREVTELAYKHLG 330


>gi|157964466|ref|YP_001499290.1| Holliday junction DNA helicase RuvB [Rickettsia massiliae MTU5]
 gi|172045665|sp|A8F1F7|RUVB_RICM5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|157844242|gb|ABV84743.1| Holliday junction DNA helicase RuvB [Rickettsia massiliae MTU5]
          Length = 353

 Score =  365 bits (937), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 198/328 (60%), Positives = 253/328 (77%), Gaps = 1/328 (0%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           LLS   S+ D ++  +RP  L+EF GQ +   NL VFI+AAK+R E LDH LF GPPGLG
Sbjct: 15  LLSPEKSENDQELP-IRPSYLQEFVGQQQIKENLSVFIKAAKSRNEHLDHTLFYGPPGLG 73

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTTLA++++ E+G NF+STSGP I K  DLAA+LTNLE  DVLFIDEIHRL+  VEE+LY
Sbjct: 74  KTTLAKIISNEIGGNFKSTSGPAILKVADLAAILTNLERNDVLFIDEIHRLNTAVEEVLY 133

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           PAMEDF+LD+++GEG +ARSVKI L +FTLI ATTR+GLL+NPL+DRFGIP+RLNFY  E
Sbjct: 134 PAMEDFELDIIIGEGSAARSVKITLPKFTLIGATTRLGLLSNPLRDRFGIPMRLNFYNTE 193

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +LK ++ R +KL  + +TD  + EIA RSRGTPRIA RLLRR+RDFA V     + +EI+
Sbjct: 194 ELKKVLNRASKLLDIDLTDSGSEEIAKRSRGTPRIALRLLRRIRDFAAVDGKSRVDKEIS 253

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           D  L RL +D++G D  D RYL  IA N+ GGPVGIETI+A LSE RDA+E+ IEPY+IQ
Sbjct: 254 DFGLNRLEVDRIGLDSNDYRYLKFIADNYNGGPVGIETIAAALSEQRDALEETIEPYLIQ 313

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
            G +QRTPRGR++   A++HL + +P++
Sbjct: 314 IGLLQRTPRGRVITIAAFEHLKMPVPNQ 341


>gi|42518564|ref|NP_964494.1| Holliday junction DNA helicase B [Lactobacillus johnsonii NCC 533]
 gi|227888711|ref|ZP_04006516.1| Holliday junction DNA helicase B [Lactobacillus johnsonii ATCC
           33200]
 gi|47606086|sp|P61533|RUVB_LACJO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|41582849|gb|AAS08460.1| Holliday junction DNA helicase RuvB [Lactobacillus johnsonii NCC
           533]
 gi|227850738|gb|EEJ60824.1| Holliday junction DNA helicase B [Lactobacillus johnsonii ATCC
           33200]
 gi|329666840|gb|AEB92788.1| Holliday junction DNA helicase RuvB [Lactobacillus johnsonii DPC
           6026]
          Length = 339

 Score =  365 bits (937), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 174/330 (52%), Positives = 229/330 (69%), Gaps = 1/330 (0%)

Query: 3   DREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           + E ++    S+ED  I L LRP+ L ++ GQ +  S +K++I+AAK R EALDHVL  G
Sbjct: 6   EEERIIGAESSEEDETIELSLRPQLLAQYIGQDKVKSEMKIYIKAAKQRDEALDHVLLYG 65

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA V+A E+GV+ +STSGP I KAGDL ALL+ L   DVLFIDEIHRL+  V
Sbjct: 66  PPGLGKTTLAFVIANEMGVHLKSTSGPAIEKAGDLVALLSELNPGDVLFIDEIHRLAKPV 125

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMEDF +D++VGEG +  +V + L  FTLI ATTR G L+ PL+DRFGI   + 
Sbjct: 126 EEVLYSAMEDFYIDIVVGEGQTTHAVHVPLPPFTLIGATTRAGQLSAPLRDRFGIIEHMQ 185

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y +EDL+ I+QR + +    +  EAA E+A RSRGTPR+A RLL+RVRDFAEV   + I
Sbjct: 186 YYSVEDLEKIIQRSSVVFNTKIDPEAAIELARRSRGTPRVANRLLKRVRDFAEVKGEEAI 245

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           +      +L  L +D  G DQ D + L M+  N+GGGPVGI+TI+A + E  D IE++ E
Sbjct: 246 SLVTTKHSLHLLEVDDEGLDQTDRKLLRMMIENYGGGPVGIKTIAANVGEDTDTIEEVYE 305

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           PY++Q+GFI RTPRGR +   A+  LG   
Sbjct: 306 PYLLQKGFITRTPRGRSVTQKAYLQLGYPP 335


>gi|29348694|ref|NP_812197.1| Holliday junction DNA helicase RuvB [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253568961|ref|ZP_04846371.1| Holliday junction DNA helicase ruvB [Bacteroides sp. 1_1_6]
 gi|298387062|ref|ZP_06996616.1| holliday junction DNA helicase RuvB [Bacteroides sp. 1_1_14]
 gi|44888482|sp|Q8A2M0|RUVB_BACTN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|29340599|gb|AAO78391.1| Holliday junction DNA helicase ruvB [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|251840980|gb|EES69061.1| Holliday junction DNA helicase ruvB [Bacteroides sp. 1_1_6]
 gi|298260212|gb|EFI03082.1| holliday junction DNA helicase RuvB [Bacteroides sp. 1_1_14]
          Length = 343

 Score =  365 bits (937), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 175/330 (53%), Positives = 237/330 (71%), Gaps = 3/330 (0%)

Query: 2   MDREGLLSRN---VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M++E    R     S+E    + LRP + E+F+GQ +   NL++F++AA+ R EALDHVL
Sbjct: 1   MEQEDFNIREHQLTSRERDFENALRPLSFEDFSGQDKVVENLRIFVKAARLRGEALDHVL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTL+ ++A ELGV F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS
Sbjct: 61  LHGPPGLGKTTLSNIIANELGVGFKVTSGPVLDKPGDLAGVLTSLEPNDVLFIDEIHRLS 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            +VEE LY AMED+++D+M+ +GPSARS++I+L+ FTL+ ATTR GLLT PL+ RFGI +
Sbjct: 121 PVVEEYLYSAMEDYRIDIMIDKGPSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGINL 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
            L +Y+ + L  I++R A +  +  +  AA EIA RSRGTPRIA  LLRRVRDFA+V  +
Sbjct: 181 HLEYYDDDILSNIIRRSASILDVPCSVRAASEIASRSRGTPRIANALLRRVRDFAQVKGS 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
            +I  EIA  AL  L IDK G D++D + L  I   F GGPVG+ TI+  L E    IE+
Sbjct: 241 GSIDTEIAQFALEALNIDKYGLDEIDNKILCTIIDKFKGGPVGLTTIATALGEDAGTIEE 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
           + EP++I++GF++RTPRGR +  +A++HLG
Sbjct: 301 VYEPFLIKEGFMKRTPRGREVTELAYKHLG 330


>gi|57234581|ref|YP_181348.1| Holliday junction DNA helicase B [Dehalococcoides ethenogenes 195]
 gi|97190018|sp|Q3Z8V1|RUVB_DEHE1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|57225029|gb|AAW40086.1| Holliday junction DNA helicase RuvB [Dehalococcoides ethenogenes
           195]
          Length = 349

 Score =  365 bits (937), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 179/331 (54%), Positives = 237/331 (71%), Gaps = 1/331 (0%)

Query: 3   DREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           ++E L+S  ++ +DA + + LRPR L +F GQ     NL V I+AAK R EALDHVL  G
Sbjct: 4   EKERLISGKLAADDAKLDTSLRPRCLSDFIGQKRLKDNLGVAIQAAKQRGEALDHVLLYG 63

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTL+ ++A E+GVN R TSGP I + GDLAA+LTNL+  D+LFIDEIHRLS  V
Sbjct: 64  PPGLGKTTLSHIIALEMGVNIRITSGPAIERQGDLAAILTNLKPFDILFIDEIHRLSRNV 123

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMED+ LD+MVG+GP ARS+++ L  FTLI ATTR  +L+ PL+DRFG   RL+
Sbjct: 124 EEVLYPAMEDYALDIMVGKGPGARSLRLKLPHFTLIGATTRYAMLSAPLRDRFGSIFRLD 183

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY+ + +  IV R A + G+   +    +IA RSRGTPR+A RLLRRVRD+A+V     I
Sbjct: 184 FYDEDAIHDIVSRSAHILGVEAEENGIRQIACRSRGTPRVANRLLRRVRDYAQVKGNGLI 243

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T ++A  +L  L +D++G D++D + L  I   FGGGPVG+ETI+A +SE  D I D+ E
Sbjct: 244 TGDMAAESLACLEVDRLGLDEIDHKVLKTIIHKFGGGPVGLETIAAAISEEADTIMDVYE 303

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           PY++Q GF++RTPRGR    +A+QHL I  P
Sbjct: 304 PYLLQLGFLERTPRGRQATRLAYQHLNIPYP 334


>gi|16127466|ref|NP_422030.1| Holliday junction DNA helicase B [Caulobacter crescentus CB15]
 gi|221236279|ref|YP_002518716.1| Holliday junction DNA helicase RuvB [Caulobacter crescentus NA1000]
 gi|20140205|sp|Q9A3G8|RUVB_CAUCR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|254767417|sp|B8H454|RUVB_CAUCN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|13424920|gb|AAK25198.1| Holliday junction DNA helicase RuvB [Caulobacter crescentus CB15]
 gi|220965452|gb|ACL96808.1| Holliday junction DNA helicase ruvB [Caulobacter crescentus NA1000]
          Length = 346

 Score =  365 bits (937), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 207/329 (62%), Positives = 250/329 (75%), Gaps = 2/329 (0%)

Query: 6   GLLSRNVSQED--ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
            ++S      D       LRP+TL EF GQ +A  NL+VFIEAAK R EALDHVL  GPP
Sbjct: 3   RVISGEPQHGDLAPADRALRPQTLAEFVGQEQAKGNLRVFIEAAKGRGEALDHVLLFGPP 62

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLAQ+VARELGVNFR+TSGPV+ K GDLAA+LTNLE  DVLFIDEIHRLS  VEE
Sbjct: 63  GLGKTTLAQIVARELGVNFRATSGPVLNKPGDLAAILTNLEANDVLFIDEIHRLSSNVEE 122

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILYPAMED  LDL++GEGPSARS++I+L+ FTL+AATTR G+L  PL+DRFGIPIRL FY
Sbjct: 123 ILYPAMEDHVLDLVIGEGPSARSIRIDLAPFTLVAATTRAGMLATPLRDRFGIPIRLEFY 182

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
              +L+ ++Q  A+  G  +TD+ A EIA R+RGTPR+AGRLLRRVRDFA    A  I R
Sbjct: 183 TPAELRHVLQHAARKMGAPLTDDGADEIAKRARGTPRVAGRLLRRVRDFATADGADRIDR 242

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           + A  AL RL +D+ G D LD RYL  +  N+GGGPVG+ETI+  ++E RDA+ED+IEPY
Sbjct: 243 KAAAMALARLEVDESGLDSLDRRYLRAMIENYGGGPVGVETIAYAIAEARDAVEDVIEPY 302

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++QQGFIQRTPRGR+    A+ HLG+  P
Sbjct: 303 LMQQGFIQRTPRGRMACGKAYLHLGLTPP 331


>gi|157825660|ref|YP_001493380.1| Holliday junction DNA helicase RuvB [Rickettsia akari str.
           Hartford]
 gi|166231546|sp|A8GN97|RUVB_RICAH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|157799618|gb|ABV74872.1| Holliday junction DNA helicase B [Rickettsia akari str. Hartford]
          Length = 342

 Score =  365 bits (937), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 199/329 (60%), Positives = 253/329 (76%), Gaps = 1/329 (0%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            +LS   S  D ++  +RP  L+EF GQ +   NL VFI+AAK+R + LDH LF GPPGL
Sbjct: 3   NILSPEKSDNDQELP-IRPSYLQEFVGQQQIKENLSVFIKAAKSRNQHLDHTLFYGPPGL 61

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLA++++ E+G NF+STSGP I KA DLAA+LTNLE  DVLFIDEIHRL+  VEEIL
Sbjct: 62  GKTTLAKIISNEIGGNFKSTSGPAILKAADLAAILTNLEKNDVLFIDEIHRLNTAVEEIL 121

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           YPAMEDF+LD+++GEGP+ARSVKI L +FTLI ATTR+GLL+NPL+DRFGIP+RLNFY  
Sbjct: 122 YPAMEDFELDIIIGEGPAARSVKITLPKFTLIGATTRLGLLSNPLRDRFGIPMRLNFYNT 181

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           E+LK ++ R +KL  + +TD  + EIA RSRGTPRIA RLLRR+RDFA V     + +EI
Sbjct: 182 EELKKVLNRASKLFDIDLTDSGSEEIAKRSRGTPRIALRLLRRIRDFAAVDGKSRVDKEI 241

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           +D  L RL +D +G D  D RYL  IA ++ GGPVGIETI+A LSE RDA+E+ IEPY+I
Sbjct: 242 SDFGLKRLEVDLIGLDSNDYRYLKFIADHYNGGPVGIETIAAALSEERDALEETIEPYLI 301

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           Q G +QRTPRGR++   A++HL + IP++
Sbjct: 302 QIGLLQRTPRGRVITIAAFEHLKMPIPNQ 330


>gi|220907910|ref|YP_002483221.1| Holliday junction DNA helicase RuvB [Cyanothece sp. PCC 7425]
 gi|254767423|sp|B8HY57|RUVB_CYAP4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|219864521|gb|ACL44860.1| Holliday junction DNA helicase RuvB [Cyanothece sp. PCC 7425]
          Length = 370

 Score =  365 bits (937), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 171/332 (51%), Positives = 227/332 (68%), Gaps = 2/332 (0%)

Query: 4   REGLLSRNVSQEDADISL--LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
            +GLL+  VS E+       +RP+ L ++ GQ E    L++ I+AA++R E LDH+L  G
Sbjct: 33  EQGLLTAEVSPEERLSRTDDIRPQRLADYVGQKELKEVLQIAIQAAQSRREPLDHLLLYG 92

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTT++ ++A E+GV+ + TS P + +  D+  LL NL+  DVLFIDEIHRL+ + 
Sbjct: 93  PPGLGKTTISLILAAEMGVSCKVTSAPALERPRDIVGLLVNLKPGDVLFIDEIHRLARMT 152

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMEDF+LD+ +G+G SAR+  + L  FTL+ ATTRVG LT+PL+DRFG+  RL 
Sbjct: 153 EELLYPAMEDFRLDITIGKGQSARTRSLPLPPFTLVGATTRVGSLTSPLRDRFGLIQRLR 212

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FYE E+L  I+ R A L    +T  AA EIA RSRGTPRIA RLL+RVRDFAEV  A TI
Sbjct: 213 FYEPEELSQIILRTASLLKTELTPSAALEIARRSRGTPRIANRLLKRVRDFAEVKAAGTI 272

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T  IA  AL    +D  G D  D R LT++  ++GGGPVG+ETI+A   E    IE++ E
Sbjct: 273 TETIASEALQLFNVDPCGLDWTDRRLLTVMIEHYGGGPVGLETIAAATGEEAQTIEEVYE 332

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           PY++Q G++ RTPRGR+    AW+HLG   P 
Sbjct: 333 PYLLQIGYLNRTPRGRVATLAAWKHLGYTPPD 364


>gi|160947140|ref|ZP_02094307.1| hypothetical protein PEPMIC_01072 [Parvimonas micra ATCC 33270]
 gi|158446274|gb|EDP23269.1| hypothetical protein PEPMIC_01072 [Parvimonas micra ATCC 33270]
          Length = 335

 Score =  365 bits (937), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 177/326 (54%), Positives = 231/326 (70%), Gaps = 1/326 (0%)

Query: 4   REGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
            + ++    S+ED +I   LRP+ ++E+ GQ +A   LK+FIEAAK R E LDH L  GP
Sbjct: 6   EDRIIGTGFSREDIEIETSLRPKWIDEYIGQEKAKERLKIFIEAAKTRNEPLDHSLLYGP 65

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++A E+GVN R TSGP I K  DLA++LTNL   DVLFIDEIHR++  VE
Sbjct: 66  PGLGKTTLANIIANEMGVNIRVTSGPAIEKPSDLASILTNLSKDDVLFIDEIHRINRSVE 125

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILYPAMED+ LD+++G+GPSARS++I+L +FTLI ATTR G LT PL+DRFGI + L  
Sbjct: 126 EILYPAMEDYALDIIIGKGPSARSLRIDLEKFTLIGATTRTGQLTGPLRDRFGIMLSLEL 185

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y IE+L+ I+ R A + G+ +  E A EIA RSRGTPRIA RLL+RVRDFA+V     I 
Sbjct: 186 YSIENLQKIITRSAGILGIEIEPEGALEIARRSRGTPRIANRLLKRVRDFAQVKRNGKID 245

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            + +   L  L +D +G D +D + +T I  NF GGPVGI+TI+A   E R  IED+ EP
Sbjct: 246 LQTSKDGLDILEVDSLGLDTIDRKIITTIIDNFSGGPVGIDTIAASTGEERITIEDVYEP 305

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLG 328
           Y++Q GF+ RT RGR++   A++H G
Sbjct: 306 YLLQIGFLSRTSRGRIVTEKAYKHFG 331


>gi|297588494|ref|ZP_06947137.1| crossover junction ATP-dependent DNA helicase RuvB [Finegoldia
           magna ATCC 53516]
 gi|297573867|gb|EFH92588.1| crossover junction ATP-dependent DNA helicase RuvB [Finegoldia
           magna ATCC 53516]
          Length = 335

 Score =  365 bits (937), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 180/331 (54%), Positives = 237/331 (71%), Gaps = 2/331 (0%)

Query: 1   MMDR-EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M D+ + ++  + ++ D DI   LRP+ + ++ GQ +    L +FIEAAK R E LDH L
Sbjct: 1   MEDKNDRIVGASFTKTDEDIDFNLRPKWMSDYIGQDKVKKKLSIFIEAAKNRNEPLDHAL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA ++A E+GVN R TSGP I K  DLA++LTNL+  DVLFIDEIHR++
Sbjct: 61  LYGPPGLGKTTLAHIIANEMGVNLRVTSGPAIEKPSDLASILTNLQKDDVLFIDEIHRIN 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
             VEEILYPAMED+ LD++VG+GPSARS++I+L +FTLI ATTR G LT PL+DRFG+ +
Sbjct: 121 RSVEEILYPAMEDYALDIIVGKGPSARSLRIDLEKFTLIGATTRSGQLTGPLRDRFGVLL 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
            L  Y+IE LK IV R A + G+ + +E A EIA RSRGTPRIA RLL+RVRD+AEV   
Sbjct: 181 NLELYDIESLKKIVTRSAGVLGIGIDEEGAMEIARRSRGTPRIANRLLKRVRDYAEVRAD 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
            TIT+EI++  L  L +DK G D +D + +  +  NF GGPVG++TI+A   E R  IED
Sbjct: 241 GTITKEISNRGLNLLEVDKCGLDYVDRKIIMTMINNFDGGPVGVDTIAAATGEERITIED 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           + EPY++Q GFI RT RGR++   A++H  I
Sbjct: 301 VYEPYLLQIGFINRTSRGRIVTDKAYKHFNI 331


>gi|167764042|ref|ZP_02436169.1| hypothetical protein BACSTE_02425 [Bacteroides stercoris ATCC
           43183]
 gi|167698158|gb|EDS14737.1| hypothetical protein BACSTE_02425 [Bacteroides stercoris ATCC
           43183]
          Length = 343

 Score =  365 bits (937), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 175/330 (53%), Positives = 237/330 (71%), Gaps = 3/330 (0%)

Query: 2   MDREGLLSRN---VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M++E    R     S+E    + LRP   E+F+GQ +   NL++F++AA+ R EALDHVL
Sbjct: 1   MEQEDFNIREHQLTSKERDFENALRPLNFEDFSGQDKVVDNLRIFVKAARLRGEALDHVL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTL+ ++A ELGV F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS
Sbjct: 61  LHGPPGLGKTTLSNIIANELGVGFKITSGPVLDKPGDLAGVLTSLEPNDVLFIDEIHRLS 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            +VEE LY AMED+++D+M+ +GPSARS++I+L+ FTL+ ATTR GLLT PL+ RFGI +
Sbjct: 121 PVVEEYLYSAMEDYRIDIMIDKGPSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGINL 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
            L +Y+ + L  I++R A +  +  +  AA EIA RSRGTPRIA  LLRRVRDFA+V  +
Sbjct: 181 HLEYYDDDVLSGIIRRSASILDVPCSTRAASEIASRSRGTPRIANALLRRVRDFAQVKGS 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
            +I  EIA+ AL  L IDK G D++D + L  I   F GGPVG+ TI+  L E    IE+
Sbjct: 241 GSIDTEIANFALEALNIDKYGLDEIDNKILCTIIDKFKGGPVGLTTIATALGEDAGTIEE 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
           + EP++I++GF++RTPRGR +  +A++HLG
Sbjct: 301 VYEPFLIKEGFLKRTPRGREVTELAYKHLG 330


>gi|269468528|gb|EEZ80182.1| Holliday junction resolvasome, helicase subunit [uncultured SUP05
           cluster bacterium]
          Length = 341

 Score =  365 bits (937), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 179/331 (54%), Positives = 244/331 (73%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLS-RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++++ L+S ++   ED  ++ +RP +L E+ GQ +  S + +FIEAAK R + LDH L 
Sbjct: 1   MIEQDSLVSAQDQDNEDIVMTSVRPSSLSEYIGQDDVKSQMALFIEAAKKRGDVLDHSLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA V+A ++G   + T+GPV+ ++GDLAA+LT LE  D+LFIDEIHRL+ 
Sbjct: 61  YGPPGLGKTTLAHVIAHQMGAGLKQTAGPVLERSGDLAAILTKLEPYDILFIDEIHRLNP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPA+EDF+LD+MVGEG +A SV++ L  FTLI ATTR G+LT+PL+DRFGI  R
Sbjct: 121 VVEEILYPALEDFKLDIMVGEGVAAHSVQLELPPFTLIGATTRAGMLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY ++DLK IV+R A + G+ +    A EIA RSRGTPRIA RLLRRVRDFA +    
Sbjct: 181 LQFYNVKDLKKIVERSANILGIEIESNGALEIAKRSRGTPRIANRLLRRVRDFATIKTNG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I ++IA+ AL  L +D++G +QLD  YL +I + F GGPVG++T+S  + E R  +ED+
Sbjct: 241 IIHQQIANEALAVLKVDELGLEQLDRDYLHIITQKFSGGPVGLDTLSTAIGEERGTLEDM 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           +EPY+IQQGF+ RTPRGR    +A+ HLG+ 
Sbjct: 301 VEPYLIQQGFVMRTPRGRSATDLAYSHLGLT 331


>gi|310829218|ref|YP_003961575.1| Holliday junction DNA helicase RuvB [Eubacterium limosum KIST612]
 gi|308740952|gb|ADO38612.1| Holliday junction DNA helicase RuvB [Eubacterium limosum KIST612]
          Length = 342

 Score =  365 bits (937), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 167/329 (50%), Positives = 237/329 (72%), Gaps = 1/329 (0%)

Query: 4   REGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           ++ +++   ++ D DI   LRP+ LE++ GQ      + +FI+AA+ R E LDHVL  GP
Sbjct: 2   KDRIVTSGFTETDIDIERSLRPQRLEDYIGQDRVKRQMAIFIQAAQKRNEPLDHVLLYGP 61

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++A+E+G N ++TSGP I K GDLAA+LT+L++ DVLFIDEIHRL   VE
Sbjct: 62  PGLGKTTLANIIAQEMGTNIKTTSGPAIEKPGDLAAILTSLKEGDVLFIDEIHRLQRSVE 121

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMEDF LD+++G+GPSA+S++++L +FTL+ ATTR GLLT PL+DRFG+  RL  
Sbjct: 122 EVLYPAMEDFVLDIIIGKGPSAKSIRLDLPKFTLVGATTRAGLLTAPLRDRFGVVQRLEL 181

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y   +L TI+ R A++  + + ++ A E+++RSRGTPRIA RLL+RVRDFAE+     I 
Sbjct: 182 YNQVELATIISRSAEILSVNLDEKGAEELSVRSRGTPRIANRLLKRVRDFAEIEGKGVID 241

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            E A  AL    +D  G D++D   LT I   F GGPVGI+T++A + E R+ IE++ EP
Sbjct: 242 LETARTALELFEVDAKGLDEIDRIMLTTIVEKFDGGPVGIDTLAAAIGEERNTIEEVYEP 301

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           Y+IQ G++ RTPRGR++    ++HLG++ 
Sbjct: 302 YLIQLGYLARTPRGRVITSGGYRHLGLEP 330


>gi|237716838|ref|ZP_04547319.1| holliday junction DNA helicase ruvB [Bacteroides sp. D1]
 gi|262405608|ref|ZP_06082158.1| Holliday junction DNA helicase RuvB [Bacteroides sp. 2_1_22]
 gi|294644445|ref|ZP_06722208.1| Holliday junction DNA helicase RuvB [Bacteroides ovatus SD CC 2a]
 gi|294810440|ref|ZP_06769097.1| Holliday junction DNA helicase RuvB [Bacteroides xylanisolvens SD
           CC 1b]
 gi|298483808|ref|ZP_07001980.1| holliday junction DNA helicase RuvB [Bacteroides sp. D22]
 gi|229442821|gb|EEO48612.1| holliday junction DNA helicase ruvB [Bacteroides sp. D1]
 gi|262356483|gb|EEZ05573.1| Holliday junction DNA helicase RuvB [Bacteroides sp. 2_1_22]
 gi|292640280|gb|EFF58535.1| Holliday junction DNA helicase RuvB [Bacteroides ovatus SD CC 2a]
 gi|294442405|gb|EFG11215.1| Holliday junction DNA helicase RuvB [Bacteroides xylanisolvens SD
           CC 1b]
 gi|295086060|emb|CBK67583.1| Holliday junction DNA helicase subunit RuvB [Bacteroides
           xylanisolvens XB1A]
 gi|298269995|gb|EFI11584.1| holliday junction DNA helicase RuvB [Bacteroides sp. D22]
          Length = 343

 Score =  365 bits (937), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 176/330 (53%), Positives = 236/330 (71%), Gaps = 3/330 (0%)

Query: 2   MDREGLLSRN---VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M++E    R     S+E    + LRP + E+F+GQ +   NL++F++AA+ R EALDHVL
Sbjct: 1   MEQEDFNIREHQLTSKERDFENALRPLSFEDFSGQDKVVENLRIFVKAARLRGEALDHVL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTL+ ++A ELGV F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS
Sbjct: 61  LHGPPGLGKTTLSNIIANELGVGFKVTSGPVLDKPGDLAGVLTSLEPNDVLFIDEIHRLS 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            +VEE LY AMED+++D+M+ +GPSARS++I+L+ FTL+ ATTR GLLT PL+ RFGI +
Sbjct: 121 PVVEEYLYSAMEDYRIDIMIDKGPSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGINL 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
            L +Y+ + L  I++R A +  +  +  AA EIA RSRGTPRIA  LLRRVRDFA+V   
Sbjct: 181 HLEYYDDDILSNIIRRSASILDVPCSVRAASEIASRSRGTPRIANALLRRVRDFAQVKGT 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
            +I  EIA  AL  L IDK G D++D + L  I   F GGPVGI TI+  L E    IE+
Sbjct: 241 GSIDTEIAQFALEALNIDKYGLDEIDNKILCTIIDKFKGGPVGITTIATALGEDAGTIEE 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
           + EP++I++GF++RTPRGR +  +A++HLG
Sbjct: 301 VYEPFLIKEGFMKRTPRGREVTELAYKHLG 330


>gi|88802111|ref|ZP_01117639.1| Holliday junction DNA helicase RuvB [Polaribacter irgensii 23-P]
 gi|88782769|gb|EAR13946.1| Holliday junction DNA helicase RuvB [Polaribacter irgensii 23-P]
          Length = 340

 Score =  365 bits (937), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 186/329 (56%), Positives = 241/329 (73%), Gaps = 1/329 (0%)

Query: 1   MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M +     + N+S ED D+   LRP + ++FTGQ +A  NLK+F+EAA  R EALDH LF
Sbjct: 1   MNENLNPENSNLSNEDLDVEKKLRPLSFDDFTGQDQAIDNLKIFVEAANQRNEALDHTLF 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A EL V  + TSGPV+ K GDLA LLTNLE+RDVLFIDEIHRLS 
Sbjct: 61  HGPPGLGKTTLAHILANELQVGIKVTSGPVLDKPGDLAGLLTNLEERDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           IVEE LY AMED+++D+M+  GP+AR+V+INL  FTLI ATTR GLLT P++ RFGI  R
Sbjct: 121 IVEEYLYSAMEDYKIDIMIESGPNARTVQINLEPFTLIGATTRSGLLTAPMRARFGISSR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L++Y+ + L TI+QR A++  + ++ E+A EIA RSRGTPRIA  LLRRVRDFA++    
Sbjct: 181 LHYYKTDLLTTIIQRSAQILNVPISMESAIEIAGRSRGTPRIANALLRRVRDFAQIKGNG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           TI+ EIA  AL  L +D  G D++D + L  I   F GGPVG+ TI+  +SE  + IE++
Sbjct: 241 TISIEIAKYALKALNVDAHGLDEMDNKILVTIIDKFKGGPVGLSTIATAVSENTETIEEV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
            EP++IQQGFI RTPRGR +  +A++HLG
Sbjct: 301 YEPFLIQQGFIMRTPRGREVTELAYKHLG 329


>gi|300727521|ref|ZP_07060912.1| holliday junction DNA helicase RuvB [Prevotella bryantii B14]
 gi|299775224|gb|EFI71825.1| holliday junction DNA helicase RuvB [Prevotella bryantii B14]
          Length = 344

 Score =  365 bits (937), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 177/332 (53%), Positives = 235/332 (70%), Gaps = 1/332 (0%)

Query: 1   MMDREGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++   + + N+S  E    + LRP    +F+GQ     NL+VF+EAAK R E LDH L 
Sbjct: 1   MVEDFDVRNENISPAEKEFENALRPLQFNDFSGQQNVVENLRVFVEAAKYRGEPLDHTLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTL+ ++A ELGV F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS 
Sbjct: 61  HGPPGLGKTTLSNIIANELGVGFKITSGPVLDKPGDLAGILTSLEPNDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE LY AMED+++D+M+ +GPSARS++I+L+ FTLI ATTR GLLT PL+ RFGI + 
Sbjct: 121 VVEEYLYSAMEDYRIDIMIDKGPSARSIQIDLNPFTLIGATTRSGLLTAPLRARFGINLH 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y  + L+ I++R + L  + + DEAA EI+ RSRGTPRIA  LLRRVRDFA+V    
Sbjct: 181 LQYYNPDTLQRIIKRSSSLLNVPIEDEAAVEISRRSRGTPRIANALLRRVRDFAQVKGNG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           TIT EIA  AL  L ID+ G D+ D + L  I   F GGPVG+ TI+  + E    +E++
Sbjct: 241 TITPEIAKFALQALNIDQYGLDETDNKILLAIIDKFRGGPVGLSTIATAIGEDTGTVEEV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
            EP++I +GFI+RTPRGR+   +A++HLG +I
Sbjct: 301 YEPFLIMEGFIKRTPRGRMATKLAFEHLGRNI 332


>gi|269837350|ref|YP_003319578.1| Holliday junction DNA helicase RuvB [Sphaerobacter thermophilus DSM
           20745]
 gi|269786613|gb|ACZ38756.1| Holliday junction DNA helicase RuvB [Sphaerobacter thermophilus DSM
           20745]
          Length = 348

 Score =  365 bits (937), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 177/333 (53%), Positives = 238/333 (71%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M    +  +   +++   + LRPR L E+ GQ +    L + I+AA+AR E LDH+L  G
Sbjct: 1   MSTRVVSGKIRDEDEPLEASLRPRRLAEYIGQEKVKEGLLISIQAAQARGECLDHLLLYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA +VA E+GVN R TSGP I +AGDL ++LTNL+  DVLFIDEIHRL+ +V
Sbjct: 61  PPGLGKTTLASIVAAEMGVNLRITSGPAIERAGDLVSILTNLKPGDVLFIDEIHRLNRVV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMEDF +D+++G+GP+ARS+++NL  FTL+ ATTR+ LLT+PL+DRFG   RL 
Sbjct: 121 EEVLYPAMEDFAVDIVLGKGPAARSMRLNLPPFTLVGATTRLALLTSPLRDRFGSTYRLE 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY +E ++ IV R A++ G+A+ ++ A EIA R+RGTPRIA RLLRRVRD+A+V     I
Sbjct: 181 FYSLEAMQKIVTRAARILGVAIDEDGAREIAARARGTPRIANRLLRRVRDYAQVRADGVI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T ++A AAL  L +D +G D +D   L  I   F GGPVG+ET++A  SE  D IED+ E
Sbjct: 241 TADVARAALEMLEVDHLGLDDVDRVILRTIVEKFDGGPVGVETLAAATSEEADTIEDVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           PY+IQ GF+QRTPRGR+    A++HL +    R
Sbjct: 301 PYLIQLGFLQRTPRGRVATRRAYEHLDLPYVER 333


>gi|258514398|ref|YP_003190620.1| Holliday junction DNA helicase RuvB [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257778103|gb|ACV61997.1| Holliday junction DNA helicase RuvB [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 336

 Score =  365 bits (936), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 177/329 (53%), Positives = 236/329 (71%), Gaps = 1/329 (0%)

Query: 4   REGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
              L++  +  ED+D+   LRPR LE++ GQ +    L +FI AA+ARAE+LDHVL  GP
Sbjct: 2   ENRLVASGLHAEDSDLETSLRPRRLEQYIGQDKVKETLAIFIRAAQARAESLDHVLLYGP 61

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++A E+GVN R TSGP I + GDLAA+LTNL   DVLFIDEIHRLS  VE
Sbjct: 62  PGLGKTTLANIIAHEMGVNIRVTSGPAIERQGDLAAILTNLGQGDVLFIDEIHRLSRQVE 121

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMEDF LD+M+G+GP ARSV++NL  FTL+ ATTR GLLT+PL+DRFG+  RL+F
Sbjct: 122 EVLYPAMEDFALDIMIGKGPGARSVRLNLPSFTLVGATTRAGLLTSPLRDRFGVISRLDF 181

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  ++L  I+ R A++  +A  ++ A  IA RSRGTPR+A RLL+RVRD+++V     I 
Sbjct: 182 YTTDELMQIILRTAQILRVAADEQGALAIASRSRGTPRVANRLLKRVRDYSQVRSDGMIN 241

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             +AD AL  L ID +G D++D + L  +   FGGGPVG++T++A   E    IED++EP
Sbjct: 242 GVLADEALQFLEIDDLGLDEVDRKLLKAVIEKFGGGPVGLDTLAASTGEEAGTIEDVLEP 301

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           +++Q G + RTPRGR++   A+ HLGI  
Sbjct: 302 FLLQLGLLARTPRGRVVTQRAYSHLGIQP 330


>gi|67458998|ref|YP_246622.1| Holliday junction DNA helicase B [Rickettsia felis URRWXCal2]
 gi|75536566|sp|Q4ULW6|RUVB_RICFE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|67004531|gb|AAY61457.1| Holliday junction DNA helicase RuvB [Rickettsia felis URRWXCal2]
          Length = 342

 Score =  365 bits (936), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 199/329 (60%), Positives = 253/329 (76%), Gaps = 1/329 (0%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            +LS    + D ++  +RP  L+EF GQ +   NL VFI+AAK+R E LDH LF GPPGL
Sbjct: 3   NILSPEKIENDQELP-IRPSYLQEFVGQQQIKENLSVFIKAAKSRNEHLDHTLFYGPPGL 61

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLA++++ E+G NF+STSGP I KA DLAA+LTNLE  DVLFIDEIHRL+  VEE+L
Sbjct: 62  GKTTLAKIISNEIGGNFKSTSGPAILKAADLAAILTNLEKNDVLFIDEIHRLNTAVEEVL 121

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           YPAMEDF+LD+++GEGP+ARSVKI L +FTLI ATTR+GLL+NPL+DRFGIP+RLNFY  
Sbjct: 122 YPAMEDFELDIIIGEGPAARSVKITLPKFTLIGATTRLGLLSNPLRDRFGIPMRLNFYNT 181

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           E+LK ++ R +KL  + +TD  + EIA RSRGTPRIA RLLRR+RDFA V     + +EI
Sbjct: 182 EELKKVLNRASKLFDIDLTDSGSEEIAKRSRGTPRIALRLLRRIRDFAAVDGKSRVDKEI 241

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           +D  L RL +D +G D  D RYL  IA N+ GGPVGIETI+A LSE RDA+E+ IEPY+I
Sbjct: 242 SDFGLNRLEVDHIGLDSNDYRYLKFIADNYNGGPVGIETIAAALSEQRDALEETIEPYLI 301

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           Q G +QRTPRGR++   A++HL + IP++
Sbjct: 302 QIGLLQRTPRGRVITIAAFEHLKMPIPNQ 330


>gi|303258189|ref|ZP_07344196.1| holliday junction DNA helicase RuvB [Burkholderiales bacterium
           1_1_47]
 gi|331000259|ref|ZP_08323943.1| Holliday junction DNA helicase RuvB [Parasutterella
           excrementihominis YIT 11859]
 gi|302858942|gb|EFL82026.1| holliday junction DNA helicase RuvB [Burkholderiales bacterium
           1_1_47]
 gi|329572425|gb|EGG54078.1| Holliday junction DNA helicase RuvB [Parasutterella
           excrementihominis YIT 11859]
          Length = 346

 Score =  365 bits (936), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 188/335 (56%), Positives = 238/335 (71%), Gaps = 1/335 (0%)

Query: 1   MMDREGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M D   +LS    + E+     LRP  L+++ GQ      L +FI AA+ R EALDHVL 
Sbjct: 1   MADSNSILSSERKEKEEVIDKALRPTRLKDYAGQDGIREQLDLFITAARNRGEALDHVLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A ELGV  R TSGPV+ KAGDLAA+LT+LE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIIANELGVKLRQTSGPVLEKAGDLAAMLTSLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPA+EDF+LD+M+GEGP+ARS+KI+L  FTL+ ATTR G LT PLQDRFGI  +
Sbjct: 121 VVEEILYPALEDFKLDIMIGEGPAARSIKIDLPHFTLVGATTRAGSLTKPLQDRFGIRAQ 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y  EDL TIV R   L  +     AA EIA RSRGTPRIA RLLRR+RDF+EV H  
Sbjct: 181 LQYYSPEDLTTIVLRSMHLLNMPADKGAAGEIARRSRGTPRIANRLLRRIRDFSEVRHQG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            ++ +IA  AL  L +D +G D LD ++L  I   F GGPVGIE +++ + E  D ++D+
Sbjct: 241 QLSEQIAKDALTMLEVDPIGLDSLDCQFLLAIIEKFQGGPVGIENLASAVGEESDTLQDM 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           +EPY+I++GF+QRTPRGR+  P A+ H G+D  H+
Sbjct: 301 VEPYLIKEGFVQRTPRGRVATPRAYSHFGLDRKHK 335


>gi|116629086|ref|YP_814258.1| Holliday junction DNA helicase B [Lactobacillus gasseri ATCC 33323]
 gi|238853829|ref|ZP_04644194.1| holliday junction DNA helicase RuvB [Lactobacillus gasseri 202-4]
 gi|122273916|sp|Q045Q2|RUVB_LACGA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|116094668|gb|ABJ59820.1| Holliday junction DNA helicase subunit RuvB [Lactobacillus gasseri
           ATCC 33323]
 gi|238833524|gb|EEQ25796.1| holliday junction DNA helicase RuvB [Lactobacillus gasseri 202-4]
          Length = 339

 Score =  365 bits (936), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 174/330 (52%), Positives = 229/330 (69%), Gaps = 1/330 (0%)

Query: 3   DREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           D E ++    ++ED  I L LRP+ L ++ GQ +  S +K++I+AAK R EALDHVL  G
Sbjct: 6   DEERIIGAESNEEDETIELSLRPQLLAQYIGQDKVKSEMKIYIKAAKQRDEALDHVLLYG 65

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA V+A E+GV+ +STSGP I KAGDL ALL+ L   DVLFIDEIHRL+  V
Sbjct: 66  PPGLGKTTLAFVIANEMGVHLKSTSGPAIEKAGDLVALLSELNPGDVLFIDEIHRLAKPV 125

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMEDF +D++VGEG +  +V + L  FTLI ATTR G L+ PL+DRFGI   + 
Sbjct: 126 EEVLYSAMEDFYIDIVVGEGQTTHAVHVPLPPFTLIGATTRAGQLSAPLRDRFGIIEHMQ 185

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y I+DL+ I+QR + +    +  EAA E+A RSRGTPR+A RLL+RVRDFAEV   + I
Sbjct: 186 YYSIDDLEKIIQRSSVVFNTKIDPEAAIELARRSRGTPRVANRLLKRVRDFAEVKGEEAI 245

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           +      +L  L +D  G DQ D + L M+  N+GGGPVGI+TI+A + E  D IE++ E
Sbjct: 246 SLATTKHSLHLLEVDDEGLDQTDRKLLRMMIENYGGGPVGIKTIAANVGEDTDTIEEVYE 305

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           PY++Q+GFI RTPRGR +   A+  LG   
Sbjct: 306 PYLLQKGFITRTPRGRSVTQKAYLQLGYPP 335


>gi|296445133|ref|ZP_06887093.1| Holliday junction DNA helicase RuvB [Methylosinus trichosporium
           OB3b]
 gi|296257307|gb|EFH04374.1| Holliday junction DNA helicase RuvB [Methylosinus trichosporium
           OB3b]
          Length = 349

 Score =  365 bits (936), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 233/330 (70%), Positives = 276/330 (83%), Gaps = 2/330 (0%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
             L++     +D D S LRP +L +FTGQ  A  NLK+FIEAAK R EALDHVLFVGPPG
Sbjct: 6   RRLVTPEQRDDDPDAS-LRPLSLGDFTGQEAARKNLKIFIEAAKTRGEALDHVLFVGPPG 64

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLAQ+VARELGVNFRSTSGPVIAKAGDLAA LTNLE RDVLFIDEIHRL+  VEEI
Sbjct: 65  LGKTTLAQIVARELGVNFRSTSGPVIAKAGDLAAQLTNLEPRDVLFIDEIHRLNPAVEEI 124

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPAMEDFQLDL++GEGP+ARSVKI+L++FTL+ ATTR GLLT PL+DRFGIP+RLNFY 
Sbjct: 125 LYPAMEDFQLDLIIGEGPAARSVKIDLAKFTLVGATTRAGLLTTPLRDRFGIPVRLNFYT 184

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            E+L+ IV+RGA++ G+A+ ++ A EIA R+RGTPRIAGRLLRRVRDFA V +++  TR 
Sbjct: 185 AEELELIVRRGARVLGVAMQEDGAREIARRARGTPRIAGRLLRRVRDFAIVENSEI-TRA 243

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +AD AL  L +D +G D +D RYL M+A NFGGGPVGIETI+A LSEPRDAIED+IEPY+
Sbjct: 244 LADRALALLEVDSIGLDVMDRRYLEMVAVNFGGGPVGIETIAAALSEPRDAIEDIIEPYL 303

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           +QQGF+QRTPRGRLL P A++HLG+  P R
Sbjct: 304 LQQGFLQRTPRGRLLTPHAFRHLGLAEPAR 333


>gi|226952124|ref|ZP_03822588.1| Holliday junction helicase, subunit B [Acinetobacter sp. ATCC
           27244]
 gi|226837133|gb|EEH69516.1| Holliday junction helicase, subunit B [Acinetobacter sp. ATCC
           27244]
          Length = 332

 Score =  365 bits (936), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 182/330 (55%), Positives = 241/330 (73%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           ++ L+S     ED     +RP +L ++ GQ      +++FI AA+ R EALDH L  GPP
Sbjct: 2   QDRLISGTEKPEDHFDRAIRPTSLADYIGQPVVREQMEIFIGAARGRGEALDHTLIFGPP 61

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++ARE+G N +STSGPV+ +AGDLAA+LTNLE+ DVLFIDEIHRLS ++EE
Sbjct: 62  GLGKTTLANIIAREMGGNLKSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPVIEE 121

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILYPAMED+QLD+M+GEGP+ARS+K++L  FTL+AATTR GLLT+PL+DRFGI  RL FY
Sbjct: 122 ILYPAMEDYQLDIMIGEGPAARSIKLDLPAFTLVAATTRAGLLTSPLRDRFGIVQRLEFY 181

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            +EDL  IV R A L  + +T E + EIA R+RGTPRIA RLLRRVRD+A+V     +T+
Sbjct: 182 SVEDLTHIVTRSANLMDVPITHEGSTEIARRARGTPRIANRLLRRVRDYAQVKGTGEVTQ 241

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           ++A  AL  L +DK G D LD RYL+M+   F G P G+E ++A ++E    +ED+IEPY
Sbjct: 242 DMAQRALDMLNVDKAGLDTLDRRYLSMLLERFEGRPTGVEALAAAMAEDSGTLEDVIEPY 301

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +IQQG++ RT RGR+   +A+   G+  P 
Sbjct: 302 LIQQGYVMRTARGRIATNMAYLQFGMTPPE 331


>gi|218258529|ref|ZP_03474885.1| hypothetical protein PRABACTJOHN_00540 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225405|gb|EEC98055.1| hypothetical protein PRABACTJOHN_00540 [Parabacteroides johnsonii
           DSM 18315]
          Length = 361

 Score =  365 bits (936), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 178/334 (53%), Positives = 233/334 (69%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M D   +    V + E    + LRP +  +F+GQ +   NLK+F+ AA+ R EALDHVL 
Sbjct: 21  MEDEFDIRDARVPESEREYENALRPLSFHDFSGQAKVVENLKIFVMAARMRKEALDHVLL 80

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTL+ ++A ELGV F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS 
Sbjct: 81  HGPPGLGKTTLSNIIANELGVGFKVTSGPVLDKPGDLAGVLTSLEKNDVLFIDEIHRLSP 140

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           IVEE LY AMED+++D+M+ +GPSARS++I+L+ FTL+ ATTR GLLT+PL+ RFGI + 
Sbjct: 141 IVEEYLYSAMEDYRIDIMIDKGPSARSIQIDLAPFTLVGATTRSGLLTSPLRARFGINMH 200

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +YE+E L  IV R A +  +     AA EIA RSRGTPRIA  LLRRVRDFA+V  + 
Sbjct: 201 LEYYEMETLTKIVLRSADILNVKCELSAAREIASRSRGTPRIANALLRRVRDFAQVKGSG 260

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I + I+  AL  L ID+ G DQ+D + LT I   F GGPVG+ TI+  L E    +E++
Sbjct: 261 EIDKAISCYALEALNIDRYGLDQIDNKLLTTIIDKFNGGPVGLTTIATALGEDPGTLEEV 320

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            EP++I++GFI+RTPRGR +  +A+ HLG   P 
Sbjct: 321 YEPFLIKEGFIKRTPRGREVTELAYTHLGRLRPD 354


>gi|328957016|ref|YP_004374402.1| Holliday junction ATP-dependent DNA helicase RuvB [Carnobacterium
           sp. 17-4]
 gi|328673340|gb|AEB29386.1| Holliday junction ATP-dependent DNA helicase RuvB [Carnobacterium
           sp. 17-4]
          Length = 337

 Score =  365 bits (936), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 170/333 (51%), Positives = 227/333 (68%), Gaps = 2/333 (0%)

Query: 1   MMDREGLLSRNVS--QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M   E ++S + S  +E +    LRP  L E+ GQ +    L ++IEAAK R EALDHVL
Sbjct: 1   MNPEERIISGDSSTTEEISLEKSLRPHYLAEYIGQEKVKRELSIYIEAAKNREEALDHVL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTT+A V++ E+GV  R+TSGP I KAGDL ALL  LE  DVLFIDEIHR+ 
Sbjct: 61  LYGPPGLGKTTMAMVISNEMGVAIRTTSGPAIEKAGDLVALLNELEAGDVLFIDEIHRMP 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            +VEE+LY AMED+ +D++VG+GP+A  V   L  FTL+ ATTR GLL+ PL+DRFGI  
Sbjct: 121 RLVEEMLYSAMEDYFVDIIVGQGPTAHPVHFPLPPFTLVGATTRAGLLSAPLRDRFGIVS 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
            + +Y +E+L  IV R A +    + +  A EIA RSRGTPR+A RLL+RVRD+A+V   
Sbjct: 181 HMEYYTVEELSDIVLRSADIFNTEIIESGAIEIARRSRGTPRVANRLLKRVRDYAQVESN 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             I ++IAD AL  L ID+ G D +D + L  +  N+ GGPVG+ TI+A + E  + IED
Sbjct: 241 GVIKKQIADEALAMLRIDQEGLDFVDQKLLKTMIENYHGGPVGLSTIAANIGEEIETIED 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           ++EPY++Q GF+QRTPRGR++  + + HLG   
Sbjct: 301 MVEPYLLQAGFLQRTPRGRIVTHMGYTHLGYPT 333


>gi|299136384|ref|ZP_07029568.1| Holliday junction DNA helicase RuvB [Acidobacterium sp. MP5ACTX8]
 gi|298602508|gb|EFI58662.1| Holliday junction DNA helicase RuvB [Acidobacterium sp. MP5ACTX8]
          Length = 376

 Score =  365 bits (936), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 175/333 (52%), Positives = 245/333 (73%), Gaps = 1/333 (0%)

Query: 3   DREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           + E L+S    ++D+   L LRP+ L EF GQ +A   L + +EAAK+R EALDHVL  G
Sbjct: 39  EAERLVSAGQVEDDSAFELKLRPKWLAEFIGQEKAKEQLAIALEAAKSRGEALDHVLLFG 98

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A ELGV ++ TSGP +   GDL A+LTNL +R VLF+DEIHRL  ++
Sbjct: 99  PPGLGKTTLATIIANELGVGYQQTSGPALQIQGDLTAILTNLRERQVLFLDEIHRLQPVL 158

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE LY A+ED+Q+D+++G+GP+AR+  + +  FT +AATTR GLL++PL+ RFGI +RL 
Sbjct: 159 EEKLYTALEDYQMDIIIGQGPAARTHTLEIKPFTFVAATTRPGLLSSPLRSRFGILLRLE 218

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY  ++L+ +V+R A++ G+ +  + A EIAMRSRGTPRIA RLLRRVRD+A+V  +  I
Sbjct: 219 FYTDDELRFVVERSAEVLGVPIDRDGAAEIAMRSRGTPRIANRLLRRVRDYAQVRASGKI 278

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
            RE A AAL  L +D  GFD+LD R L  I   + GGPVG+ T++A L+E +DA+E++ E
Sbjct: 279 DRETAMAALKMLEVDAHGFDELDRRLLRTIIEKYDGGPVGLNTLAAALAEEQDALEEVYE 338

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           P++IQ GF+ RTPRGR+   +A++HLGI++P +
Sbjct: 339 PFLIQIGFLDRTPRGRVATRLAYEHLGIEMPRK 371


>gi|325859879|ref|ZP_08173009.1| Holliday junction DNA helicase RuvB [Prevotella denticola CRIS
           18C-A]
 gi|325482805|gb|EGC85808.1| Holliday junction DNA helicase RuvB [Prevotella denticola CRIS
           18C-A]
          Length = 344

 Score =  365 bits (936), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 178/330 (53%), Positives = 232/330 (70%), Gaps = 4/330 (1%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           +  E L S     E+A    LRP    +F+GQ +   NL VF+EAAK R E LDH L  G
Sbjct: 7   IHEEKLTSAEKDFENA----LRPLRFSDFSGQQKVVENLSVFVEAAKYRGEPLDHTLLHG 62

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTL+ ++A ELGV F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS +V
Sbjct: 63  PPGLGKTTLSNIIANELGVGFKITSGPVLDKPGDLAGILTSLEPNDVLFIDEIHRLSPVV 122

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE LY AMED+++D+M+ +GPSARS++I+L+ FTL+ ATTR GLLT PL+ RFGI + L 
Sbjct: 123 EEYLYSAMEDYRIDIMIDKGPSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGINLHLE 182

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y+ E LK I++R A+L  + + D+AA EIA RSRGTPRI   LLRRVRDFA+V    TI
Sbjct: 183 YYDPETLKRIIKRSAQLLKVPIVDDAAIEIARRSRGTPRICNSLLRRVRDFAQVKGNGTI 242

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T EIA  +L  L IDK G D++D + L  I   F GGPVG+ TI+  + E    +E++ E
Sbjct: 243 TPEIASLSLQSLNIDKYGLDEIDNKILLTIIDKFRGGPVGVSTIATAIGEDSGTVEEVYE 302

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           P++I +GFI+RTPRGR+   +A+ HLG + 
Sbjct: 303 PFLIMEGFIKRTPRGRVATQLAYSHLGRNY 332


>gi|116493019|ref|YP_804754.1| Holliday junction DNA helicase RuvB [Pediococcus pentosaceus ATCC
           25745]
 gi|122265517|sp|Q03ER0|RUVB_PEDPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|116103169|gb|ABJ68312.1| Holliday junction DNA helicase subunit RuvB [Pediococcus
           pentosaceus ATCC 25745]
          Length = 337

 Score =  365 bits (936), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 171/330 (51%), Positives = 226/330 (68%), Gaps = 2/330 (0%)

Query: 2   MDREGLLSRNVS--QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M+ E + S  V    E+ +   LRP+TL ++ GQ +    L+V+I AAK R EALDHVL 
Sbjct: 1   MEDERITSAEVQSPDEENEELSLRPQTLHQYIGQDQIKHELEVYIAAAKNREEALDHVLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA V+A E+ V  R+TSGP I K GDL ALL  L+  DVLFIDEIHRL  
Sbjct: 61  YGPPGLGKTTLAMVIANEMNVQIRTTSGPAIEKPGDLVALLNELQPGDVLFIDEIHRLPK 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LY AMEDF +D++VG+GP+A  +   L  FTLI ATTR GLL+ PL+DRFGI   
Sbjct: 121 VVEEMLYSAMEDFFVDIVVGQGPTAHPIHFPLPPFTLIGATTRAGLLSAPLRDRFGIVEH 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           +N+Y   DL  IV+R A +    + D+ A EIA RSRGTPRI+ RLL+R+RDFAEV +  
Sbjct: 181 MNYYNEADLANIVRRSAGIFNSHIDDQGAYEIASRSRGTPRISNRLLKRIRDFAEVENDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I R++   +L  L +D  G D+ D + LT +   +GGGPVGI TI+A + E  D I ++
Sbjct: 241 QIDRQLVSQSLKLLQVDNRGLDRTDKKVLTTMIELYGGGPVGISTIAANIGEEPDTISEM 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
            EPY++Q GF++RTPRGR++   A++HLG+
Sbjct: 301 YEPYLLQIGFLKRTPRGRMVTERAYEHLGL 330


>gi|261878859|ref|ZP_06005286.1| crossover junction endoribonuclease subunit B [Prevotella bergensis
           DSM 17361]
 gi|270334538|gb|EFA45324.1| crossover junction endoribonuclease subunit B [Prevotella bergensis
           DSM 17361]
          Length = 343

 Score =  365 bits (936), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 175/332 (52%), Positives = 232/332 (69%), Gaps = 1/332 (0%)

Query: 1   MMDREGLLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M +   +    + S E    + LRP    +F GQ +   NL+VF+EAAK R E LDH L 
Sbjct: 1   MAEDFDIRDEQITSNEKEFENALRPLCFGDFNGQQKVVENLQVFVEAAKYRGEPLDHTLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTL+ ++A ELGV F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRL  
Sbjct: 61  YGPPGLGKTTLSNIIANELGVGFKITSGPVLDKPGDLAGILTSLEPSDVLFIDEIHRLQP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE LY AMED+++D+M+ +GPSARS++I+L+ FTLI ATTR G+LT PL+ RFGI + 
Sbjct: 121 VVEEYLYSAMEDYRIDIMIDKGPSARSIQIDLNPFTLIGATTRSGMLTAPLRARFGINMH 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y+ E L  I++R A+L  + V DEAA EIA RSRGTPR+A  LLRRVRDFA+V    
Sbjct: 181 LEYYDPETLTRIIRRSAQLLKVPVDDEAAMEIARRSRGTPRVANGLLRRVRDFAQVKGNG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           TIT +IA  +L  L ID+ G D++D + LT I   F GGPVG+ TI+  + E    +E++
Sbjct: 241 TITTDIAQLSLQALNIDQYGLDEIDNKILTTIIDKFRGGPVGVSTIATAIGEDAGTVEEV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
            EP++I +GFI+RTPRGR+   +A+ HLG + 
Sbjct: 301 YEPFLIMEGFIKRTPRGRMATRLAYDHLGRNP 332


>gi|257063441|ref|YP_003143113.1| Holliday junction DNA helicase subunit RuvB [Slackia
           heliotrinireducens DSM 20476]
 gi|256791094|gb|ACV21764.1| Holliday junction DNA helicase subunit RuvB [Slackia
           heliotrinireducens DSM 20476]
          Length = 346

 Score =  365 bits (936), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 174/325 (53%), Positives = 236/325 (72%), Gaps = 1/325 (0%)

Query: 6   GLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
             ++  ++++D A    LRP+ L+++ GQ     +L + I+AAK R E +DHVLF GPPG
Sbjct: 19  RAVTPELTEDDLALDRSLRPKHLDDYIGQTRVKDSLSILIQAAKQRGECMDHVLFSGPPG 78

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLA VVA ELG N R+TSGP IA+ GDLAA+LTNLED DVLFIDEIHRL+  VEE+
Sbjct: 79  LGKTTLATVVANELGANIRTTSGPAIARTGDLAAILTNLEDGDVLFIDEIHRLNRQVEEV 138

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPA+ED+ LD++VG+GP+ARS++++L +FTL+ ATTR GLLT PL+DRFGI  RL++Y 
Sbjct: 139 LYPALEDYVLDIVVGKGPAARSIRLDLPKFTLVGATTRTGLLTGPLRDRFGIVFRLDYYT 198

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            E+L  IV+R A +  +A+ +E A EIA RSRGTPR+A R+L+RVRD+A+V     I  +
Sbjct: 199 PEELAGIVKRSAGILDVAIDEEGALEIARRSRGTPRLANRMLKRVRDWAQVRGTGDIDED 258

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
            A  AL    +D +G D LD + L ++   F G PVG+ T+++ LSE  D +ED+ EPY+
Sbjct: 259 TAAQALSFFEVDSLGLDALDNKILELLCVGFDGRPVGLSTLASALSEDPDTVEDVYEPYL 318

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGI 329
           IQQG I RTP+GR     A++H+GI
Sbjct: 319 IQQGLIMRTPKGRQATDRAFEHIGI 343


>gi|146277280|ref|YP_001167439.1| Holliday junction DNA helicase RuvB [Rhodobacter sphaeroides ATCC
           17025]
 gi|166231545|sp|A4WRX0|RUVB_RHOS5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|145555521|gb|ABP70134.1| Holliday junction DNA helicase RuvB [Rhodobacter sphaeroides ATCC
           17025]
          Length = 341

 Score =  364 bits (935), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 213/333 (63%), Positives = 258/333 (77%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M   +  L      ED D   LRP++LEEF GQ EA +NL+VFIE+A+ R EA+DH LF 
Sbjct: 1   MTSSDPTLRPERLPEDMD-RALRPQSLEEFVGQAEARANLRVFIESARMRGEAMDHTLFH 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++ARELGV FR TSGPV+AK GDLAA+LTNLE RDVLFIDEIHRLS +
Sbjct: 60  GPPGLGKTTLAQIMARELGVGFRMTSGPVLAKPGDLAAILTNLEPRDVLFIDEIHRLSPV 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPA+EDF LDL++GEGP+AR+V+I L  FTL+ ATTR+GLLT PL+DRFGIP RL
Sbjct: 120 VEEVLYPALEDFALDLVIGEGPAARTVRIELQPFTLVGATTRLGLLTTPLRDRFGIPTRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY   +L  IV RGA++ G+    E   EIA R+RGTPRIAGRLLRRV DFA V     
Sbjct: 180 QFYTEAELTLIVARGARMMGVDSDPEGTQEIARRARGTPRIAGRLLRRVVDFALVEGDGR 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +T+ IAD AL RL +D +G D  D RYL++IA N+GGGPVGIETI+A LSE RDA+E++I
Sbjct: 240 LTQAIADRALTRLGVDHLGLDLGDRRYLSLIAENYGGGPVGIETIAAALSEARDAVEEVI 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY++QQG IQRTPRGR+L   AW+HLG++ P 
Sbjct: 300 EPYLLQQGLIQRTPRGRMLAHKAWRHLGLEAPK 332


>gi|294678734|ref|YP_003579349.1| holliday junction DNA helicase RuvB [Rhodobacter capsulatus SB
           1003]
 gi|294477554|gb|ADE86942.1| holliday junction DNA helicase RuvB [Rhodobacter capsulatus SB
           1003]
          Length = 345

 Score =  364 bits (935), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 209/333 (62%), Positives = 264/333 (79%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M + +  L  +   EDAD   LRP+ LEEF GQ EA +NL+VFIE+AK R +A+DH LF 
Sbjct: 1   MTEPDPTLRPDRLPEDAD-RALRPQVLEEFIGQAEARANLRVFIESAKMRGQAMDHTLFH 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++ARELGVNF+ TSGPV+A+AGDLAA+LTNLE+RDVLFIDEIHR++  
Sbjct: 60  GPPGLGKTTLAQIMARELGVNFKMTSGPVLARAGDLAAILTNLENRDVLFIDEIHRMNPA 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDF+LDL++GEGP+AR+V+I L  FTL+ ATTR+GLLT PL+DRFGIP RL
Sbjct: 120 VEEVLYPAMEDFELDLVIGEGPAARTVRIELQPFTLVGATTRLGLLTTPLRDRFGIPTRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  ++L  IV RGA+L G+    +   EIA R+RGTPRIAGRLLRRV DFA V     
Sbjct: 180 QFYTEDELDLIVSRGARLLGIPADPDGTREIAKRARGTPRIAGRLLRRVVDFALVEGDGR 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +TR++AD AL RL +D +G D  D RY+ ++A ++GGGPVG+ET+SA LSE RDA+E++I
Sbjct: 240 LTRKLADNALTRLGVDHLGLDGADRRYMMLMAEHYGGGPVGVETLSAALSESRDALEEVI 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY++QQG IQRTPRGR+L   AW+HLG++ P 
Sbjct: 300 EPYLLQQGLIQRTPRGRMLGHRAWRHLGLEAPQ 332


>gi|154490080|ref|ZP_02030341.1| hypothetical protein PARMER_00309 [Parabacteroides merdae ATCC
           43184]
 gi|154089229|gb|EDN88273.1| hypothetical protein PARMER_00309 [Parabacteroides merdae ATCC
           43184]
          Length = 361

 Score =  364 bits (935), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 178/334 (53%), Positives = 233/334 (69%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M D   +    V + E    + LRP +  +F+GQ +   NLK+F+ AA+ R EALDHVL 
Sbjct: 21  MEDEFDIRDARVPESEREYENALRPLSFHDFSGQAKVVENLKIFVMAARMRKEALDHVLL 80

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTL+ ++A ELGV F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS 
Sbjct: 81  HGPPGLGKTTLSNIIANELGVGFKVTSGPVLDKPGDLAGVLTSLEKNDVLFIDEIHRLSP 140

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           IVEE LY AMED+++D+M+ +GPSARS++I+L+ FTL+ ATTR GLLT+PL+ RFGI + 
Sbjct: 141 IVEEYLYSAMEDYRIDIMIDKGPSARSIQIDLAPFTLVGATTRSGLLTSPLRARFGINMH 200

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +YE+E L  IV R A +  +     AA EIA RSRGTPRIA  LLRRVRDFA+V  + 
Sbjct: 201 LEYYEMETLTKIVLRSADILNVKCELSAAREIASRSRGTPRIANALLRRVRDFAQVKGSG 260

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I + I+  AL  L ID+ G DQ+D + LT I   F GGPVG+ TI+  L E    +E++
Sbjct: 261 EIDKAISCYALEALNIDRYGLDQIDNKLLTTIIDKFNGGPVGLTTIATALGEDPGTLEEV 320

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            EP++I++GFI+RTPRGR +  +A+ HLG   P 
Sbjct: 321 YEPFLIKEGFIKRTPRGREVTELAYTHLGRLRPD 354


>gi|296112685|ref|YP_003626623.1| holliday junction DNA helicase RuvB [Moraxella catarrhalis RH4]
 gi|295920379|gb|ADG60730.1| holliday junction DNA helicase RuvB [Moraxella catarrhalis RH4]
 gi|326560942|gb|EGE11307.1| Holliday junction DNA helicase RuvB [Moraxella catarrhalis 7169]
 gi|326563933|gb|EGE14183.1| Holliday junction DNA helicase RuvB [Moraxella catarrhalis 12P80B1]
 gi|326567325|gb|EGE17440.1| Holliday junction DNA helicase RuvB [Moraxella catarrhalis BC1]
          Length = 329

 Score =  364 bits (935), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 191/324 (58%), Positives = 247/324 (76%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M    L+  N  ++D     +RP +L+E+ GQ +    +KVFI AA+AR EALDH L  G
Sbjct: 1   MLENRLIDPNPKKDDTADRAIRPSSLDEYIGQPKVREQMKVFIPAARARGEALDHTLIFG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A+E+G N RSTSGPV+ +AGDLAA+LTNLE  DVLFIDEIHRLS ++
Sbjct: 61  PPGLGKTTLANIIAKEMGGNLRSTSGPVLERAGDLAAILTNLEAGDVLFIDEIHRLSPVI 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILYPAMEDFQLD+M+GEGP+ARS+K++L  FTL+AATTR GLL+ PL DRFGI  RL 
Sbjct: 121 EEILYPAMEDFQLDIMIGEGPAARSIKLDLPPFTLVAATTRAGLLSAPLFDRFGIVQRLE 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY +EDL TIV+R A+L G+ + D  A E+A RSRGTPRIA RLLRRVRD+AE+      
Sbjct: 181 FYNVEDLTTIVKRSARLLGVLMDDGGALEVAHRSRGTPRIANRLLRRVRDYAEIKGDGVA 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T +IA AAL  LA+DK G DQLD RYL+++++ F GGP G+E ++A ++E R  +ED+IE
Sbjct: 241 TADIASAALDMLAVDKQGLDQLDRRYLSVLSQRFHGGPAGVEALAAAMAEDRGTLEDVIE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQ 325
           PY++QQG+IQRT +GR++    +Q
Sbjct: 301 PYLLQQGYIQRTSKGRIISDKVFQ 324


>gi|75676908|ref|YP_319329.1| Holliday junction DNA helicase B [Nitrobacter winogradskyi Nb-255]
 gi|97190181|sp|Q3SP14|RUVB_NITWN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|74421778|gb|ABA05977.1| Holliday junction DNA helicase RuvB [Nitrobacter winogradskyi
           Nb-255]
          Length = 348

 Score =  364 bits (935), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 223/334 (66%), Positives = 272/334 (81%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M +   +++     +D   + LRP+ L EF GQ +A +NL++FI+AA+ R EALDHVLFV
Sbjct: 1   MTEASRIVAPERHADDVGDTALRPQKLSEFIGQRQARANLQIFIDAARKREEALDHVLFV 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ+VARELGV FR+TSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRLS  
Sbjct: 61  GPPGLGKTTLAQIVARELGVGFRATSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSPA 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDFQLDL++GEGP+ARSVKI L++FTL+ ATTR GLLTNPL+DRFGIP+RL
Sbjct: 121 VEEVLYPAMEDFQLDLIIGEGPAARSVKIELAKFTLVGATTRAGLLTNPLRDRFGIPVRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           NFY  ++L+ IV RGA++  + +T + A EIA R+RGTPRIAGRLLRRVRDFAE A A  
Sbjct: 181 NFYTEDELEKIVSRGARVLNVGMTPDGANEIARRARGTPRIAGRLLRRVRDFAEAADAAA 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I R +AD AL  L +D  G D +D RYLT IA ++GGGPVG+ET++A LSEPRDAIED+I
Sbjct: 241 IDRAVADHALGALEVDAAGLDAMDRRYLTTIALSYGGGPVGVETMAAALSEPRDAIEDII 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           EPY+IQ G++QRTPRGRLL   A++HLG+  P R
Sbjct: 301 EPYLIQCGYLQRTPRGRLLTSHAFRHLGLTEPSR 334


>gi|119944490|ref|YP_942170.1| Holliday junction DNA helicase B [Psychromonas ingrahamii 37]
 gi|166231543|sp|A1SSV6|RUVB_PSYIN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|119863094|gb|ABM02571.1| Holliday junction DNA helicase subunit RuvB [Psychromonas
           ingrahamii 37]
          Length = 334

 Score =  364 bits (935), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 184/334 (55%), Positives = 242/334 (72%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLS-RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M+D + L+S      E+     +RP+ L ++ GQ +    +++FIEAA+ R EALDH+L 
Sbjct: 1   MIDEDRLISGTQKIDENFIDRAIRPKFLADYEGQPQVNKQMEIFIEAARQRNEALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTL+ +VA EL VN ++TSGP++ KAGDLAALLTNLE+ DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLSHIVANELEVNIKTTSGPILEKAGDLAALLTNLEENDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEEILYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPAFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y+++ L  IV R A    L +++  A EIA RSRGTPRIA RLLRRVRD+A+V  A 
Sbjct: 181 LEYYDLKSLTRIVLRSAGHFKLNMSEAGAVEIARRSRGTPRIANRLLRRVRDYAQVKKAN 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  ++A  AL  L +D  GFD +D + L  I   F GGPVG++ ++A + E ++ IED+
Sbjct: 241 VIDDDVAKLALDMLEVDNEGFDYMDRKLLMAILDTFMGGPVGLDNLAAAIGEEKETIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +EPY+IQQGF+QRTPRGR+     + H G D P 
Sbjct: 301 LEPYLIQQGFLQRTPRGRIATNRTYLHFGFDKPQ 334


>gi|163745819|ref|ZP_02153178.1| Holliday junction DNA helicase B [Oceanibulbus indolifex HEL-45]
 gi|161380564|gb|EDQ04974.1| Holliday junction DNA helicase B [Oceanibulbus indolifex HEL-45]
          Length = 339

 Score =  364 bits (935), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 208/333 (62%), Positives = 253/333 (75%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D +  +      ED D   LRP+ L EF GQ EA +NL VFI++A+ R EA+DH LF 
Sbjct: 1   MTDIDPTVRPAPMPEDFD-RALRPQMLAEFVGQAEARANLAVFIQSARQRGEAMDHTLFH 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++ARELGV FR TSGPV+AKAGDLAA+LTNLE RDVLFIDEIHRL+  
Sbjct: 60  GPPGLGKTTLAQIMARELGVGFRMTSGPVLAKAGDLAAILTNLEARDVLFIDEIHRLNPA 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPA+EDF+LDL++GEGP+AR+V+I L  FTL+ ATTR+GLLT PL+DRFGIP RL
Sbjct: 120 VEEVLYPALEDFELDLVIGEGPAARTVRIELQPFTLVGATTRMGLLTTPLRDRFGIPTRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  ++L  IV R A+  G    +  A EIA R+RGTPRIAGRLLRRV DFA V     
Sbjct: 180 QFYTEDELFIIVDRNARKLGAPADEGGAREIAKRARGTPRIAGRLLRRVVDFAVVEGDGR 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +T+E+AD AL RL +D +G D  D RYL +IA N+ GGPVGIET+SA LSE RDA+E++I
Sbjct: 240 VTQELADMALTRLGVDHLGLDGADRRYLKLIAENYQGGPVGIETLSAALSESRDALEEVI 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EP+++QQG IQRTPRGR+L   AW HLG+  P 
Sbjct: 300 EPFLLQQGLIQRTPRGRMLAAKAWTHLGMAAPK 332


>gi|315640090|ref|ZP_07895214.1| crossover junction ATP-dependent DNA helicase RuvB [Enterococcus
           italicus DSM 15952]
 gi|315484153|gb|EFU74625.1| crossover junction ATP-dependent DNA helicase RuvB [Enterococcus
           italicus DSM 15952]
          Length = 332

 Score =  364 bits (935), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 168/327 (51%), Positives = 222/327 (67%), Gaps = 1/327 (0%)

Query: 5   EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           + ++S   S ED      LRP+ L ++ GQ +    L ++IEAAK R E+LDHVL  GPP
Sbjct: 2   DRMISPEPSNEDLSFEKSLRPQYLSQYIGQEKVKHELAIYIEAAKKREESLDHVLLYGPP 61

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTT+A V+A E+ VN R+TSGP I K GDL ALL  LE  DVLFIDEIHRL  + EE
Sbjct: 62  GLGKTTMAMVIANEMAVNIRTTSGPAIEKPGDLVALLNELEPGDVLFIDEIHRLPRVAEE 121

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LY AMEDF +D+MVG+GP+A  V   L  FTLI ATTR G+L+ PL+DRFGI   + +Y
Sbjct: 122 MLYSAMEDFFVDIMVGQGPTAHPVHFPLPPFTLIGATTRAGMLSAPLRDRFGIVSHMEYY 181

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
              +L  IVQR A++    + ++ A EIA RSRGTPRIA RLL+RVRDFA+V H  +IT+
Sbjct: 182 LDSELTEIVQRSAEVFSTVIQEQGAIEIARRSRGTPRIANRLLKRVRDFAQVQHDGSITK 241

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
            +AD AL  L +D  G D +D + L  +   + GGPVG+ TI+  + E  + +ED+ EP+
Sbjct: 242 SVADQALDVLQVDHEGLDYIDQKLLRTMIELYHGGPVGLTTIAVNIGEETETVEDMYEPF 301

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGID 330
           +IQ+GFIQRT RGR+   +A++H G  
Sbjct: 302 LIQKGFIQRTARGRVATELAYRHFGYQ 328


>gi|20140117|sp|Q92I87|RUVB_RICCN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
          Length = 342

 Score =  364 bits (935), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 196/329 (59%), Positives = 252/329 (76%), Gaps = 1/329 (0%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            +LS   S+ D ++  +RP  L+EF GQ +   NL VFI+AAK+R E LDH LF GPPGL
Sbjct: 3   NILSPEKSENDQELP-IRPSYLQEFVGQQQIKENLSVFIKAAKSRNEHLDHTLFYGPPGL 61

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLA++++ E+G NF+STSGP I K  DLAA+LTNLE  DVLFIDEIHRL+  VEE+L
Sbjct: 62  GKTTLAKIISNEIGGNFKSTSGPAILKVADLAAILTNLEKNDVLFIDEIHRLNTAVEEVL 121

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           YPAMEDF+LD+++GEG +ARSVKI L +FTLI ATTR+GLL+NPL+DRFGIP+RLNFY  
Sbjct: 122 YPAMEDFELDIIIGEGSAARSVKITLPKFTLIGATTRLGLLSNPLRDRFGIPMRLNFYNT 181

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
            +LK ++ R +KL  + +TD  + EIA RSRGTPRIA RLLRR+RDFA V     + +EI
Sbjct: 182 GELKKVLNRASKLLDIDLTDSGSEEIAKRSRGTPRIALRLLRRIRDFAAVDGKSRVDKEI 241

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           +D  L RL +D++G D  D RYL  IA N+ GGPVGIETI+A LSE RDA+E+ IEPY+I
Sbjct: 242 SDFGLNRLEVDRIGLDSNDYRYLKFIADNYNGGPVGIETIAAALSEQRDALEETIEPYLI 301

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           Q G +QRTPRGR++   A++HL + +P++
Sbjct: 302 QIGLLQRTPRGRVITIAAFEHLKMPVPNQ 330


>gi|110802636|ref|YP_699224.1| Holliday junction DNA helicase RuvB [Clostridium perfringens SM101]
 gi|123341652|sp|Q0SRN3|RUVB_CLOPS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|110683137|gb|ABG86507.1| Holliday junction DNA helicase RuvB [Clostridium perfringens SM101]
          Length = 346

 Score =  364 bits (935), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 172/327 (52%), Positives = 233/327 (71%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M    + S  +  +  +   LRP  + E+ GQ +    L +FI+AA+ R EALDHV+  G
Sbjct: 1   MSERLVTSNEIGIDSTNEYSLRPEKINEYIGQDKVKERLNIFIKAAQRRGEALDHVILYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+G N + TSGP I +AGDLAA+LT L   DVLFIDEIHRL+  V
Sbjct: 61  PPGLGKTTLANIIANEMGGNLKITSGPAIERAGDLAAILTTLNTNDVLFIDEIHRLNRSV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILYPAMED+ LD+++G+G +++S++++L +FTLI ATTR+G+L++PL+DRFG+   + 
Sbjct: 121 EEILYPAMEDYVLDIIIGKGAASKSIRLDLPKFTLIGATTRIGMLSSPLRDRFGVLCSME 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y  E LK I+ R A++ G  +T+E A EIA RSRGTPRIA RLL+RVRDFAEV +   I
Sbjct: 181 YYTDEQLKEIIIRSAEILGCHITEEGAFEIAKRSRGTPRIANRLLKRVRDFAEVLYDNEI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T E A  +L  L +D  GFD++D + L  I  NF GGPVGIET++  + E  D IED+ E
Sbjct: 241 TEEAAKKSLEILEVDGEGFDRIDNKILEAIIDNFNGGPVGIETLAYFVGEELDTIEDVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLG 328
           PY++Q+GFI RTPRGR+    A++HLG
Sbjct: 301 PYLLQKGFIVRTPRGRMATDKAYKHLG 327


>gi|119383445|ref|YP_914501.1| Holliday junction DNA helicase B [Paracoccus denitrificans PD1222]
 gi|166231509|sp|A1AZW1|RUVB_PARDP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|119373212|gb|ABL68805.1| Holliday junction DNA helicase RuvB [Paracoccus denitrificans
           PD1222]
          Length = 341

 Score =  364 bits (935), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 209/333 (62%), Positives = 263/333 (78%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M   + +L     + D +   LRP+ LE+F GQ EA +NL+VFIE+A+ R +A+DH LF 
Sbjct: 1   MSQPDPMLRPEPLESDGEDRALRPQRLEDFVGQAEARANLRVFIESARMRGKAMDHTLFH 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++ARELGVNF+ TSGPV+A+AGDLAA+LTNLE RDVLFIDEIHR++  
Sbjct: 61  GPPGLGKTTLAQIMARELGVNFKMTSGPVLARAGDLAAILTNLEARDVLFIDEIHRMNPA 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILYPAMEDF+LDL++GEGP+AR+V+I L  FTL+ ATTR+GLLT PL+DRFGIP RL
Sbjct: 121 VEEILYPAMEDFELDLVIGEGPAARTVRIELQPFTLVGATTRLGLLTTPLRDRFGIPTRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY IE+L  IV RGA+L G+    E   EIA R+RGTPRIAGRLLRRV DFA V     
Sbjct: 181 QFYTIEELDLIVTRGARLMGIPSEPEGTREIARRARGTPRIAGRLLRRVVDFALVEGDGR 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +TR+IAD+AL RL +D +G D  D RYLT++A ++GGGPVG+ET+SA LSE RD+IE++I
Sbjct: 241 LTRKIADSALTRLGVDHLGLDTADRRYLTLMAEHYGGGPVGVETLSAALSESRDSIEEVI 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY++QQG + RTPRGR+L  + W+HLG+D P 
Sbjct: 301 EPYLMQQGLVSRTPRGRMLARLGWRHLGLDAPR 333


>gi|315160795|gb|EFU04812.1| Holliday junction DNA helicase RuvB [Enterococcus faecalis TX0645]
          Length = 338

 Score =  364 bits (935), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 174/332 (52%), Positives = 224/332 (67%), Gaps = 1/332 (0%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M + E LLS    + +A I   LRP+ L ++ GQ +    L ++IEAAK R EALDH L 
Sbjct: 1   MTEEERLLSAASQEAEASIEKSLRPQFLAQYIGQDKVKQELTIYIEAAKNRNEALDHTLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTT+A V+A E+ VN R+TSGP I +AGDL A+L  LE  DVLFIDEIHRL  
Sbjct: 61  YGPPGLGKTTMAMVIANEMNVNIRTTSGPAIERAGDLVAILNELEPGDVLFIDEIHRLPR 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LY AMEDF +D+MVG+G +A  V   L  FTL+ ATTR G+L+ PL+DRFGI   
Sbjct: 121 VVEEMLYSAMEDFYIDIMVGQGTTAHPVHFPLPPFTLVGATTRAGMLSAPLRDRFGIISH 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           + +Y+ +DLK IV R A +    + +E A EIA RSRGTPRIA RLL+RVRDFA+V    
Sbjct: 181 MEYYQEQDLKEIVLRSADIFQTEIFEEGAFEIARRSRGTPRIANRLLKRVRDFAQVQSDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I R IAD AL  L +D  G D +D + L  +   +GGGP G+ T+S  + E  + +ED+
Sbjct: 241 KIDRAIADKALTLLQVDHQGLDYVDQKLLKTMIDLYGGGPGGLSTLSVNIGEETETVEDM 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
            EPY+IQ+GFI+RTPRGR+  P A+ H G D 
Sbjct: 301 YEPYLIQKGFIKRTPRGRIATPFAYAHFGYDY 332


>gi|327312927|ref|YP_004328364.1| Holliday junction DNA helicase RuvB [Prevotella denticola F0289]
 gi|326945744|gb|AEA21629.1| Holliday junction DNA helicase RuvB [Prevotella denticola F0289]
          Length = 344

 Score =  364 bits (935), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 178/330 (53%), Positives = 232/330 (70%), Gaps = 4/330 (1%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           +  E L S     E+A    LRP    +F+GQ +   NL VF+EAAK R E LDH L  G
Sbjct: 7   IHEEKLTSAEKDFENA----LRPLRFSDFSGQQKVVENLSVFVEAAKYRGEPLDHTLLHG 62

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTL+ ++A ELGV F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS +V
Sbjct: 63  PPGLGKTTLSNIIANELGVGFKITSGPVLDKPGDLAGILTSLEPNDVLFIDEIHRLSPVV 122

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE LY AMED+++D+M+ +GPSARS++I+L+ FTL+ ATTR GLLT PL+ RFGI + L 
Sbjct: 123 EEYLYSAMEDYRIDIMIDKGPSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGINLHLE 182

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y+ E LK I++R A+L  + + D+AA EIA RSRGTPRI   LLRRVRDFA+V    TI
Sbjct: 183 YYDPETLKRIIKRSAQLLKVPIVDDAAIEIARRSRGTPRICNSLLRRVRDFAQVKGNGTI 242

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T EIA  +L  L IDK G D++D + L  I   F GGPVG+ TI+  + E    +E++ E
Sbjct: 243 TLEIASLSLQSLNIDKYGLDEIDNKILLTIIDKFRGGPVGVSTIATAIGEDSGTVEEVYE 302

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           P++I +GFI+RTPRGR+   +A+ HLG + 
Sbjct: 303 PFLIMEGFIKRTPRGRVATQLAYSHLGRNY 332


>gi|333029484|ref|ZP_08457545.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacteroides
           coprosuis DSM 18011]
 gi|332740081|gb|EGJ70563.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacteroides
           coprosuis DSM 18011]
          Length = 363

 Score =  364 bits (935), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 171/331 (51%), Positives = 234/331 (70%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M +   +    ++ +E    + LRP +  +F GQ +   NL +F++AA+ RAEALDHVL 
Sbjct: 24  MEENFDIRDHQLTTREKEFENALRPLSFSDFNGQDKVVENLTIFVKAARLRAEALDHVLL 83

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTL+ ++A EL V F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS 
Sbjct: 84  HGPPGLGKTTLSNIIANELEVGFKVTSGPVLDKPGDLAGVLTSLEPNDVLFIDEIHRLSP 143

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE LY AMED+++D+M+ +GPSARS+++ L+ FTL+ ATTR GLLT PL+ RFGI + 
Sbjct: 144 VVEEYLYSAMEDYRIDIMIDKGPSARSIQLELNPFTLVGATTRSGLLTAPLRARFGINLH 203

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y+ + L TI++R A +  +   D+AA EIA RSRGTPRI   LLRRVRDFA+V    
Sbjct: 204 LEYYDDDVLTTIIKRSAAILDVPCDDQAAAEIASRSRGTPRICNALLRRVRDFAQVKGDG 263

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           +I  +IA  AL  L IDK G D++D + L  +   F GGPVG+ TI+  L E    IE++
Sbjct: 264 SIDIKIAQYALEALNIDKYGLDEIDNKILCTVIDKFDGGPVGLTTIATALGEDPGTIEEV 323

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
            EP++I++GFI+RTPRGR + P+A++HLG +
Sbjct: 324 YEPFLIKEGFIKRTPRGREVTPLAYKHLGRE 354


>gi|329956350|ref|ZP_08296947.1| Holliday junction DNA helicase RuvB [Bacteroides clarus YIT 12056]
 gi|328524247|gb|EGF51317.1| Holliday junction DNA helicase RuvB [Bacteroides clarus YIT 12056]
          Length = 344

 Score =  364 bits (935), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 175/330 (53%), Positives = 237/330 (71%), Gaps = 3/330 (0%)

Query: 2   MDREGLLSRN---VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M++E    R     S+E    + LRP   E+F+GQ +   NL++F++AA+ R EALDHVL
Sbjct: 1   MEQEDFNIREHQLTSKERDFENALRPLNFEDFSGQDKVVDNLRIFVKAARLRGEALDHVL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTL+ ++A ELGV F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS
Sbjct: 61  LHGPPGLGKTTLSNIIANELGVGFKITSGPVLDKPGDLAGVLTSLEPNDVLFIDEIHRLS 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            +VEE LY AMED+++D+M+ +GPSARS++I+L+ FTL+ ATTR GLLT PL+ RFGI +
Sbjct: 121 PVVEEYLYSAMEDYRIDIMIDKGPSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGINL 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
            L +Y+ + L  I++R A +  +  +  AA EIA RSRGTPRIA  LLRRVRDFA+V  +
Sbjct: 181 HLEYYDDDVLGGIIRRSANILDVPCSTRAASEIAGRSRGTPRIANALLRRVRDFAQVKGS 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
            +I  EIA+ AL  L IDK G D++D + L  I   F GGPVG+ TI+  L E    IE+
Sbjct: 241 GSIDTEIANFALEALNIDKYGLDEIDNKILCTIIDKFKGGPVGLTTIATALGEDAGTIEE 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
           + EP++I++GF++RTPRGR +  +A++HLG
Sbjct: 301 VYEPFLIKEGFLKRTPRGREVTELAYKHLG 330


>gi|281422347|ref|ZP_06253346.1| holliday junction DNA helicase RuvB [Prevotella copri DSM 18205]
 gi|281403578|gb|EFB34258.1| holliday junction DNA helicase RuvB [Prevotella copri DSM 18205]
          Length = 344

 Score =  364 bits (934), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 176/328 (53%), Positives = 232/328 (70%), Gaps = 3/328 (0%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           R+ ++S     E      LRP    +F+GQ     NL+VF+EAAK R E LDH L  GPP
Sbjct: 8   RQEIVSPA---EKEFEKALRPLKFSDFSGQNGVVENLEVFVEAAKYRGEPLDHTLLHGPP 64

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTL+ ++A ELGV F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS +VEE
Sbjct: 65  GLGKTTLSNIIANELGVGFKITSGPVLDKPGDLAGILTSLEPNDVLFIDEIHRLSPVVEE 124

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
            LY AMED+++D+M+ +GPSARS++I+L+ FTL+ ATTR GLLT PL+ RFGI + L +Y
Sbjct: 125 YLYSAMEDYRIDIMIDKGPSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGINLHLEYY 184

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           +   L+ I++R A L  + + DEAA EI+ RSRGTPRIA  LLRRVRDFA+V    TIT 
Sbjct: 185 DPATLQKIIKRSAMLLKVPIEDEAAVEISRRSRGTPRIANSLLRRVRDFAQVKGNGTITY 244

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
            IA  AL  L ID+ G D++D + LT I   F GGPVG+ TI+  + E    +E++ EP+
Sbjct: 245 GIAQMALKALNIDQYGLDEIDNKILTTIIDKFRGGPVGVSTIATAIGEDGGTVEEVYEPF 304

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           +I +GFI+RTPRGR+  P+A++HLG + 
Sbjct: 305 LIMEGFIKRTPRGRMATPLAYEHLGRNP 332


>gi|329120083|ref|ZP_08248753.1| crossover junction ATP-dependent DNA helicase RuvB [Neisseria
           bacilliformis ATCC BAA-1200]
 gi|327463614|gb|EGF09932.1| crossover junction ATP-dependent DNA helicase RuvB [Neisseria
           bacilliformis ATCC BAA-1200]
          Length = 349

 Score =  364 bits (934), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 197/329 (59%), Positives = 241/329 (73%), Gaps = 2/329 (0%)

Query: 5   EGLLSRNV--SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           E +++     SQE+     LRP+ L ++ GQ +A   L +FI AAK R EALDH L  GP
Sbjct: 20  ERIIAAQSLSSQEEQLERALRPKFLADYIGQHKAKEQLAIFIAAAKKRGEALDHTLLFGP 79

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++A+ELGVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VE
Sbjct: 80  PGLGKTTLAHIIAKELGVNLRQTSGPVLERAGDLAALLTNLEPHDVLFIDEIHRLSPVVE 139

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILYPA+ED+QLD+M+GEGP+ARSVKI+L  FTL+ ATTR G+LTNPL+DRFGI  RL F
Sbjct: 140 EILYPALEDYQLDIMIGEGPAARSVKIDLPPFTLVGATTRAGMLTNPLRDRFGIVARLEF 199

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  +DL TIV R A L  L +  E A EIA RSRGTPRIA RLLRRVRD+AEV  +  I 
Sbjct: 200 YGHDDLATIVSRSAGLLQLDLAAEGALEIARRSRGTPRIANRLLRRVRDYAEVKGSGRIA 259

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            + ADAAL  L +D+ G D +D ++L  +   FGGGPVG++ I+A + E  D IED+IEP
Sbjct: 260 ADTADAALTLLDVDQAGLDMMDRKFLEAVLHKFGGGPVGLDNIAAAIGESADTIEDVIEP 319

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           Y+IQQGF+QRTPRGR    I   H G+ +
Sbjct: 320 YLIQQGFLQRTPRGRTATEICRLHFGLPV 348


>gi|229829131|ref|ZP_04455200.1| hypothetical protein GCWU000342_01216 [Shuttleworthia satelles DSM
           14600]
 gi|229792294|gb|EEP28408.1| hypothetical protein GCWU000342_01216 [Shuttleworthia satelles DSM
           14600]
          Length = 334

 Score =  364 bits (934), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 170/328 (51%), Positives = 232/328 (70%), Gaps = 2/328 (0%)

Query: 2   MDREGLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M+R  ++S  + +ED A    LRPR L E+ GQ +A  +L ++IEAAK R E+LDHVL  
Sbjct: 1   MER-RIISTEIQEEDQAQEFSLRPRKLSEYIGQEKAKQSLGIYIEAAKNRGESLDHVLLY 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA +++ E+GVN + TSGP IAK G++AA+L+ L + D+LF+DEIHRL+  
Sbjct: 60  GPPGLGKTTLAGIISNEMGVNVKITSGPAIAKPGEMAAILSGLGEGDILFVDEIHRLNRQ 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMED+ +D+M+G+G SARS++++L  FTL+ ATTR GLL+ PL+DRFGI   L
Sbjct: 120 VEEVLYPAMEDYAIDIMIGKGQSARSIRLDLPHFTLVGATTRAGLLSAPLRDRFGIIHHL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  ++L  I++  A   G+ +  E A E+A RSRGTPR+A RLL+RVRD+AEV +   
Sbjct: 180 EFYTPQELSVIIRHSADKLGVTIDREGAYEMARRSRGTPRLANRLLKRVRDYAEVEYEGK 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           ITRE+A  AL  L +DKMG D  D   L  I   F GGPVG++T+SA + E    IE++ 
Sbjct: 240 ITREVAGEALDLLEVDKMGLDSNDRLILMTIIEKFDGGPVGLDTLSAAIGEDAGTIEEVY 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
           EPY+++ G I RTP+GR+    A+ H G
Sbjct: 300 EPYLVKNGLINRTPKGRVATDQAYHHFG 327


>gi|153807203|ref|ZP_01959871.1| hypothetical protein BACCAC_01481 [Bacteroides caccae ATCC 43185]
 gi|149130323|gb|EDM21533.1| hypothetical protein BACCAC_01481 [Bacteroides caccae ATCC 43185]
          Length = 343

 Score =  364 bits (934), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 176/330 (53%), Positives = 237/330 (71%), Gaps = 3/330 (0%)

Query: 2   MDREGLLSRN---VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M++E    R     S+E    + LRP + E+F+GQ +   NL++F++AA+ R EALDHVL
Sbjct: 1   MEQEDFNIREHQLTSRERDFENALRPLSFEDFSGQDKVVENLRIFVKAARLRGEALDHVL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTL+ ++A ELGV F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS
Sbjct: 61  LHGPPGLGKTTLSNIIANELGVGFKVTSGPVLDKPGDLAGVLTSLEPNDVLFIDEIHRLS 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            +VEE LY AMED+++D+M+ +GPSARS++I+L+ FTL+ ATTR GLLT PL+ RFGI +
Sbjct: 121 PVVEEYLYSAMEDYRIDIMIDKGPSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGINL 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
            L +Y+ + L  I++R A +  +  +  AA EIA RSRGTPRIA  LLRRVRDFA+V  +
Sbjct: 181 HLEYYDDDILSNIIRRSASILDVPCSLRAAGEIASRSRGTPRIANALLRRVRDFAQVKGS 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
            +I  EIA  AL  L IDK G D++D + L  I   F GGPVGI TI+  L E    IE+
Sbjct: 241 GSIDTEIAQFALEALNIDKYGLDEIDNKILCTIIDKFKGGPVGITTIATALGEDAGTIEE 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
           + EP++I++GF++RTPRGR +  +A++HLG
Sbjct: 301 VYEPFLIKEGFMKRTPRGREVTELAYKHLG 330


>gi|289432492|ref|YP_003462365.1| Holliday junction DNA helicase RuvB [Dehalococcoides sp. GT]
 gi|288946212|gb|ADC73909.1| Holliday junction DNA helicase RuvB [Dehalococcoides sp. GT]
          Length = 362

 Score =  364 bits (934), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 181/330 (54%), Positives = 237/330 (71%), Gaps = 1/330 (0%)

Query: 3   DREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           ++E L+S  +  +DA + + LRPR L +F GQ     NL V I+AAK R EALDHVL  G
Sbjct: 17  EKERLISGKLVTDDAKLDTSLRPRCLPDFIGQKRLKDNLGVAIQAAKQRGEALDHVLLYG 76

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTL+ ++A E+GVN R TSGP I + GDLAA+LTNL+  D+LFIDEIHRLS  V
Sbjct: 77  PPGLGKTTLSHIIALEMGVNIRITSGPAIERQGDLAAILTNLKPFDILFIDEIHRLSRNV 136

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMED+ LD+MVG+GP ARS+++ L  FTLI ATTR  +L+ PL+DRFG   RL+
Sbjct: 137 EEVLYPAMEDYALDIMVGKGPGARSLRLKLPHFTLIGATTRYAMLSAPLRDRFGSIFRLD 196

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY+ E +  IV+R A++ G+   +    +IA RSRGTPR+A RLLRRVRD+A+V     I
Sbjct: 197 FYDEEAIHDIVRRSARILGVEADENGLHQIACRSRGTPRVANRLLRRVRDYAQVKGNGLI 256

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T +IA  +L  L +DK+G D++D + L  I   FGGGPVG+ETI+A +SE  D I D+ E
Sbjct: 257 TADIAAESLACLEVDKLGLDEIDHKVLKTIIHKFGGGPVGLETIAAAISEEADTIMDVYE 316

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           PY++Q GF++RTPRGR    +A+QHL I  
Sbjct: 317 PYLLQLGFLERTPRGRQATRLAYQHLSIPY 346


>gi|332685821|ref|YP_004455595.1| holliday junction DNA helicase RuvB [Melissococcus plutonius ATCC
           35311]
 gi|332369830|dbj|BAK20786.1| holliday junction DNA helicase RuvB [Melissococcus plutonius ATCC
           35311]
          Length = 337

 Score =  364 bits (934), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 169/330 (51%), Positives = 224/330 (67%), Gaps = 1/330 (0%)

Query: 1   MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M + E L++   +Q+D  +   LRP+ L ++ GQ +    L ++I+AA  R E LDH L 
Sbjct: 1   MSEEERLMTAKSNQQDEILEKSLRPKFLTQYIGQEKVKQELTIYIKAACNRKEVLDHTLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA V A E+ V  R+TSGP I + GDL A+L  L   DVLFIDEIHRL  
Sbjct: 61  YGPPGLGKTTLAMVTANEMDVGMRTTSGPAIERPGDLVAILNELTPGDVLFIDEIHRLPR 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEE+LY AMEDF +D+MVG+G +A  V  +L  FTLI ATTR G+L+ PL+DRFGI   
Sbjct: 121 TVEEMLYSAMEDFYVDIMVGQGTTAHPVHFSLPPFTLIGATTRAGMLSAPLRDRFGIISH 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           + +Y +EDLK IV R + +    + DE ACEIA RSRGTPRIA RLL+RVRDFA+V    
Sbjct: 181 MEYYTVEDLKEIVIRSSDIFQTEIMDEGACEIARRSRGTPRIANRLLKRVRDFAQVQSNG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            +T++IAD AL  L +D  G D +D + L  +   +GGGPVG+ TIS  + E  + +ED+
Sbjct: 241 VVTKDIADKALTLLQVDHQGLDYIDQKLLKTMIELYGGGPVGLSTISVNIGEETETVEDM 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
            EP++IQ+GFI+RTPRGR+   +A++HLG 
Sbjct: 301 YEPFLIQKGFIKRTPRGRIATTLAYEHLGY 330


>gi|302344853|ref|YP_003813206.1| Holliday junction DNA helicase RuvB [Prevotella melaninogenica ATCC
           25845]
 gi|302149058|gb|ADK95320.1| Holliday junction DNA helicase RuvB [Prevotella melaninogenica ATCC
           25845]
          Length = 344

 Score =  364 bits (934), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 179/327 (54%), Positives = 230/327 (70%), Gaps = 4/327 (1%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           +  E L S     E+A    LRP    +F+GQ +   NL VF+EAAK R E LDH L  G
Sbjct: 7   IHEERLNSVEKDFENA----LRPLKFNDFSGQSKVVENLSVFVEAAKFRGEPLDHTLLHG 62

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTL+ ++A ELGV F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS +V
Sbjct: 63  PPGLGKTTLSNIIANELGVGFKITSGPVLDKPGDLAGILTSLEPNDVLFIDEIHRLSPVV 122

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE LY AMED+++D+M+ +GPSARS++I+L+ FTL+ ATTR GLLT PL+ RFGI + L 
Sbjct: 123 EEYLYSAMEDYRIDIMIDKGPSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGINLHLE 182

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y+ E LK I++R A L  + + DEAA EIA RSRGTPRI   LLRRVRDFA+V    TI
Sbjct: 183 YYDPETLKRIIKRSAALLKVPIVDEAADEIARRSRGTPRICNALLRRVRDFAQVKGNGTI 242

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T EIA  +L  L IDK G D++D + L  I   F GGPVG+ TI+  + E    +E++ E
Sbjct: 243 TPEIATMSLQSLNIDKYGLDEIDNKILLTIIDKFRGGPVGVSTIATAIGEDSGTVEEVYE 302

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLG 328
           P++I +GFI+RTPRGR+   +A+ HLG
Sbjct: 303 PFLIMEGFIKRTPRGRVATQLAYDHLG 329


>gi|169824512|ref|YP_001692123.1| holliday junction DNA helicase [Finegoldia magna ATCC 29328]
 gi|167831317|dbj|BAG08233.1| holliday junction DNA helicase [Finegoldia magna ATCC 29328]
          Length = 335

 Score =  364 bits (934), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 179/331 (54%), Positives = 237/331 (71%), Gaps = 2/331 (0%)

Query: 1   MMDR-EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M D+ + ++  + ++ D DI   LRP+ + ++ GQ +    L +FIEAAK R E LDH L
Sbjct: 1   MEDKNDRIVGASFTKIDEDIDFNLRPKWMSDYIGQDKVKKKLSIFIEAAKNRNEPLDHAL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA ++A E+GVN R TSGP I K  DLA++LTNL+  DVLFIDEIHR++
Sbjct: 61  LYGPPGLGKTTLAHIIANEMGVNLRVTSGPAIEKPSDLASILTNLQKDDVLFIDEIHRIN 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
             VEEILYPAMED+ LD++VG+GPSARS++I+L +FTLI ATTR G LT PL+DRFG+ +
Sbjct: 121 RSVEEILYPAMEDYALDIIVGKGPSARSLRIDLEKFTLIGATTRSGQLTGPLRDRFGVLL 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
            L  Y+IE LK IV R A + G+ + ++ A EIA RSRGTPRIA RLL+RVRD+AEV   
Sbjct: 181 NLELYDIESLKKIVTRSAGVLGIGIDEQGAMEIARRSRGTPRIANRLLKRVRDYAEVRAD 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
            TIT+EI++  L  L +DK G D +D + +  +  NF GGPVG++TI+A   E R  IED
Sbjct: 241 GTITQEISNLGLNLLEVDKCGLDYVDRKIIMTMINNFDGGPVGVDTIAAATGEERITIED 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           + EPY++Q GFI RT RGR++   A++H  I
Sbjct: 301 VYEPYLLQIGFINRTSRGRIVTDKAYKHFNI 331


>gi|218281324|ref|ZP_03487812.1| hypothetical protein EUBIFOR_00377 [Eubacterium biforme DSM 3989]
 gi|218217509|gb|EEC91047.1| hypothetical protein EUBIFOR_00377 [Eubacterium biforme DSM 3989]
          Length = 336

 Score =  364 bits (934), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 175/331 (52%), Positives = 230/331 (69%), Gaps = 3/331 (0%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M RE  +  N+ + D     LRP++L E+ GQ E   NL VFI AA++R EALDHVLF G
Sbjct: 1   MPRE--VDGNLQECDNFEKTLRPQSLNEYIGQSELKENLNVFIHAARSRNEALDHVLFYG 58

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+  N ++ SGP I K+GDLAA+LT LE  DVLFIDEIHRL   V
Sbjct: 59  PPGLGKTTLAYILANEMHGNLKTASGPSIEKSGDLAAILTTLEPGDVLFIDEIHRLPKQV 118

Query: 122 EEILYPAMEDFQLDLMVGEG-PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           EE+LYPAMED+ LD++VG+   +  +++INL  FTL+ ATTR G L+ PL+DRFGI  +L
Sbjct: 119 EEVLYPAMEDYCLDIVVGKDSATVHNIRINLPPFTLVGATTRAGDLSAPLRDRFGIISQL 178

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y ++DL+ IV R + +    +   A  EIA+RSRGTPRIA RL RRVRDFA+V +   
Sbjct: 179 EYYNLQDLEKIVYRTSCVMNTEIDKNAVAEIALRSRGTPRIANRLFRRVRDFAQVYNEGV 238

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I+ EIA  AL RL +D +G D +D +YL  I   F GGPVG+E I++ + E    +ED+ 
Sbjct: 239 ISSEIAKTALDRLRVDHLGLDAVDHKYLKGIIERFKGGPVGLEAIASSIGEEPMTLEDVY 298

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           EPY++Q GFI RTPRGR++ P A++HL I  
Sbjct: 299 EPYLLQIGFINRTPRGRIVTPKAYEHLQIPY 329


>gi|77163678|ref|YP_342203.1| Holliday junction DNA helicase B [Nitrosococcus oceani ATCC 19707]
 gi|254435093|ref|ZP_05048600.1| Holliday junction DNA helicase RuvB [Nitrosococcus oceani AFC27]
 gi|97190177|sp|Q3JES3|RUVB_NITOC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|76881992|gb|ABA56673.1| Holliday junction DNA helicase subunit RuvB [Nitrosococcus oceani
           ATCC 19707]
 gi|207088204|gb|EDZ65476.1| Holliday junction DNA helicase RuvB [Nitrosococcus oceani AFC27]
          Length = 348

 Score =  364 bits (934), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 184/332 (55%), Positives = 240/332 (72%), Gaps = 1/332 (0%)

Query: 1   MMDREGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M     ++S    + E A    LRP  L ++ GQ +    ++VFI AA+AR EALDHVL 
Sbjct: 1   MTLNRDMVSPQEDRGEKAVEFSLRPARLADYVGQPQVQEQMEVFIPAARARHEALDHVLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTL+ ++A EL VN R TSGPV+ + GDLAALLTNLE RDVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLSHIIANELEVNLRQTSGPVLERPGDLAALLTNLEPRDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED Q+D+M+GEGP+ARS+K++L  FTL+ ATTR GLLT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDRQIDIMIGEGPAARSIKLDLVPFTLVGATTRAGLLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY ++ L  IV+R A++ G+A+  E A EIA RSRGTPRIA RLLRRVRD+AE+    
Sbjct: 181 LEFYAVDHLVLIVERTARILGMAMEKEGALEIARRSRGTPRIANRLLRRVRDYAEIKGDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            +TR++A  AL  L +D  GFD +D + L  +   F GGPVG+++++A + E R  IED+
Sbjct: 241 QVTRQVAQKALDLLDVDSHGFDTMDRKLLLAMLEKFDGGPVGVDSLAAAIGEERGTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           IEP+++QQGF+ RTPRGR+    A+ H G+  
Sbjct: 301 IEPFLLQQGFVMRTPRGRMATRHAYLHFGLKP 332


>gi|288801738|ref|ZP_06407180.1| holliday junction DNA helicase RuvB [Prevotella melaninogenica D18]
 gi|288335780|gb|EFC74213.1| holliday junction DNA helicase RuvB [Prevotella melaninogenica D18]
          Length = 344

 Score =  364 bits (933), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 179/327 (54%), Positives = 230/327 (70%), Gaps = 4/327 (1%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           +  E L S     E+A    LRP    +F+GQ +   NL VF+EAAK R E LDH L  G
Sbjct: 7   IHEERLNSVEKDFENA----LRPLKFNDFSGQSKVVENLSVFVEAAKFRGEPLDHTLLHG 62

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTL+ ++A ELGV F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS +V
Sbjct: 63  PPGLGKTTLSNIIANELGVGFKITSGPVLDKPGDLAGILTSLEPNDVLFIDEIHRLSPVV 122

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE LY AMED+++D+M+ +GPSARS++I+L+ FTL+ ATTR GLLT PL+ RFGI + L 
Sbjct: 123 EEYLYSAMEDYRIDIMIDKGPSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGINLHLE 182

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y+ E LK I++R A L  + + DEAA EIA RSRGTPRI   LLRRVRDFA+V    TI
Sbjct: 183 YYDPETLKRIIKRSATLLKVPIVDEAADEIARRSRGTPRICNALLRRVRDFAQVKGNGTI 242

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T EIA  +L  L IDK G D++D + L  I   F GGPVG+ TI+  + E    +E++ E
Sbjct: 243 TPEIATMSLQSLNIDKYGLDEIDNKILLTIIDKFRGGPVGVSTIATAIGEDSGTVEEVYE 302

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLG 328
           P++I +GFI+RTPRGR+   +A+ HLG
Sbjct: 303 PFLIMEGFIKRTPRGRVATQLAYDHLG 329


>gi|218131744|ref|ZP_03460548.1| hypothetical protein BACEGG_03365 [Bacteroides eggerthii DSM 20697]
 gi|317474640|ref|ZP_07933914.1| Holliday junction DNA helicase RuvB [Bacteroides eggerthii
           1_2_48FAA]
 gi|217986047|gb|EEC52386.1| hypothetical protein BACEGG_03365 [Bacteroides eggerthii DSM 20697]
 gi|316909321|gb|EFV31001.1| Holliday junction DNA helicase RuvB [Bacteroides eggerthii
           1_2_48FAA]
          Length = 343

 Score =  364 bits (933), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 174/330 (52%), Positives = 239/330 (72%), Gaps = 3/330 (0%)

Query: 2   MDREGLLSRN---VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M++E    R+    S+E    + LRP   E+F+GQ +   NL++F++AA+ R EALDHVL
Sbjct: 1   MEQEDFNIRDHQLTSKERDFENALRPLNFEDFSGQDKVVDNLRIFVKAARLRGEALDHVL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTL+ ++A ELGV F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS
Sbjct: 61  LHGPPGLGKTTLSNIIANELGVGFKITSGPVLDKPGDLAGVLTSLEPNDVLFIDEIHRLS 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            +VEE LY AMED+++D+M+ +GPSARS++I+L+ FTL+ ATTR GLLT PL+ RFGI +
Sbjct: 121 PVVEEYLYSAMEDYRIDIMIDKGPSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGINL 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
            L +Y+ + L  I++R A +  +  + +AA EIA RSRGTPRIA  LLRRVRDFA+V  +
Sbjct: 181 HLEYYDDDVLSGIIRRSASILDVPCSTKAASEIAGRSRGTPRIANALLRRVRDFAQVKGS 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
            +I  +IA+ AL  L IDK G D++D + L  I   F GGPVG+ TI+  L E    IE+
Sbjct: 241 GSIDTQIANFALEALNIDKYGLDEIDNKILCTIIDKFKGGPVGLTTIATALGEDAGTIEE 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
           + EP++I++GF++RTPRGR +  +A++HLG
Sbjct: 301 VYEPFLIKEGFLKRTPRGREVTELAYKHLG 330


>gi|146299402|ref|YP_001193993.1| Holliday junction DNA helicase B [Flavobacterium johnsoniae UW101]
 gi|189046032|sp|A5FJE5|RUVB_FLAJO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|146153820|gb|ABQ04674.1| Holliday junction DNA helicase RuvB [Flavobacterium johnsoniae
           UW101]
          Length = 340

 Score =  364 bits (933), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 180/329 (54%), Positives = 232/329 (70%), Gaps = 1/329 (0%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M +     ++  + E+ D+   LRP + ++F GQ +   NLKVF+ AA  R EALDH LF
Sbjct: 1   MNENLDPTTKGYNSEELDLEKRLRPLSFDDFAGQDQVLENLKVFVAAANQRGEALDHALF 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A EL V  + TSGPV+ K GDLA LLTNL++RDVLFIDEIHRLS 
Sbjct: 61  HGPPGLGKTTLANILANELEVGIKITSGPVLDKPGDLAGLLTNLDERDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           IVEE LY AMEDF++D+M+  GP+AR+V+INL+ FTLI ATTR GLLT P++ RFGI  R
Sbjct: 121 IVEEYLYSAMEDFKIDIMIESGPNARTVQINLNPFTLIGATTRSGLLTAPMRARFGISSR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y  E L TIV+R A +  + +  EAA EIA RSRGTPRIA  LLRRVRDFA++    
Sbjct: 181 LQYYSTELLTTIVERSAGILKMPIDLEAAIEIAGRSRGTPRIANALLRRVRDFAQIKGNG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           TI  EI+  AL  L +D  G D++D + L  I   F GGPVG+ T++  +SE  + IE++
Sbjct: 241 TIDLEISKYALKALNVDAHGLDEMDNKILLTIINKFKGGPVGLSTLATAVSESSETIEEV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
            EP++IQ+GFI RTPRGR +   A++HLG
Sbjct: 301 YEPFLIQEGFIMRTPRGREVTEKAYKHLG 329


>gi|325268269|ref|ZP_08134902.1| crossover junction ATP-dependent DNA helicase RuvB [Prevotella
           multiformis DSM 16608]
 gi|324989411|gb|EGC21361.1| crossover junction ATP-dependent DNA helicase RuvB [Prevotella
           multiformis DSM 16608]
          Length = 344

 Score =  364 bits (933), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 177/330 (53%), Positives = 232/330 (70%), Gaps = 4/330 (1%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           +  E L S     E+A    LRP    +F+GQ +   NL VF+EAAK R E LDH L  G
Sbjct: 7   IHEEKLTSAEKDFENA----LRPLRFRDFSGQQKVVENLSVFVEAAKYRGEPLDHTLLHG 62

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTL+ ++A ELGV F+ TSGPV+ K GDLA +LT+LE  DV+FIDEIHRLS +V
Sbjct: 63  PPGLGKTTLSNIIANELGVGFKITSGPVLDKPGDLAGILTSLEPNDVIFIDEIHRLSPVV 122

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE LY AMED+++D+M+ +GPSARS++I+L+ FTL+ ATTR GLLT PL+ RFGI + L 
Sbjct: 123 EEYLYSAMEDYRIDIMIDKGPSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGINLHLE 182

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y+ E L+ I++R A+L  + + DEAA EIA RSRGTPRI   LLRRVRDFA+V    TI
Sbjct: 183 YYDPETLQRIIKRSAQLLKVPIVDEAAAEIARRSRGTPRICNSLLRRVRDFAQVKGNGTI 242

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T EIA  +L  L IDK G D++D + L  I   F GGPVG+ TI+  + E    +E++ E
Sbjct: 243 TPEIAGLSLQSLNIDKFGLDEIDNKILLTIIDKFRGGPVGVSTIATAIGEDSGTVEEVYE 302

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           P++I +GFI+RTPRGR+   +A+ HLG + 
Sbjct: 303 PFLIMEGFIKRTPRGRVATRLAYTHLGRNY 332


>gi|332519996|ref|ZP_08396460.1| Holliday junction DNA helicase RuvB [Lacinutrix algicola 5H-3-7-4]
 gi|332044555|gb|EGI80749.1| Holliday junction DNA helicase RuvB [Lacinutrix algicola 5H-3-7-4]
          Length = 340

 Score =  364 bits (933), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 182/329 (55%), Positives = 236/329 (71%), Gaps = 1/329 (0%)

Query: 1   MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M +     + N S E+ DI   LRP + ++FTGQ     NL+VF++AA  R EALDH LF
Sbjct: 1   MNENLNPSNENFSPEEFDIEKTLRPLSFDDFTGQDNVLENLQVFVQAANQRDEALDHTLF 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A EL V  + TSGPV+ K GDLA LLTNL+DRDVLFIDEIHRLS 
Sbjct: 61  HGPPGLGKTTLANILANELNVGIKITSGPVLDKPGDLAGLLTNLDDRDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           IVEE LY AMEDF++D+M+  GP+AR+V+INL+ FTL+ ATTR GLLT P++ RFGI  R
Sbjct: 121 IVEEYLYSAMEDFKIDIMIESGPNARTVQINLNPFTLVGATTRSGLLTAPMRARFGIQSR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y  + L TI+QR A++  + ++ EAA EIA RSRGTPRIA  LLRRVRDFA++    
Sbjct: 181 LQYYSTDLLSTIIQRSAQILNVPISMEAAIEIAGRSRGTPRIANALLRRVRDFAQIKGNG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           +I   IA  +L  L +D  G D++D + L+ I   F GGPVGI TI+  +SE  + +E++
Sbjct: 241 SIDIAIAKFSLEALNVDAYGLDEMDNKILSTIIDKFKGGPVGITTIATAVSESTETVEEV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
            EP++IQQGFI RTPRGR +  +A++HLG
Sbjct: 301 YEPFLIQQGFIMRTPRGREVTALAYEHLG 329


>gi|302380554|ref|ZP_07269019.1| Holliday junction DNA helicase RuvB [Finegoldia magna
           ACS-171-V-Col3]
 gi|303233656|ref|ZP_07320310.1| Holliday junction DNA helicase RuvB [Finegoldia magna BVS033A4]
 gi|302311497|gb|EFK93513.1| Holliday junction DNA helicase RuvB [Finegoldia magna
           ACS-171-V-Col3]
 gi|302495090|gb|EFL54842.1| Holliday junction DNA helicase RuvB [Finegoldia magna BVS033A4]
          Length = 335

 Score =  364 bits (933), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 180/331 (54%), Positives = 237/331 (71%), Gaps = 2/331 (0%)

Query: 1   MMDR-EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M D+ + ++  + ++ D DI   LRP+ + ++ GQ +    L +FIEAAK R E LDH L
Sbjct: 1   MEDKNDRIVGASFTKIDEDIDFNLRPKWMSDYIGQDKVKKKLSIFIEAAKNRNEPLDHAL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA ++A E+GVN R TSGP I K  DLA++LTNL+  DVLFIDEIHR++
Sbjct: 61  LYGPPGLGKTTLAHIIANEMGVNLRVTSGPAIEKPSDLASILTNLQKDDVLFIDEIHRIN 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
             VEEILYPAMED+ LD++VG+GPSARS++I+L +FTLI ATTR G LT PL+DRFG+ +
Sbjct: 121 RSVEEILYPAMEDYALDIIVGKGPSARSLRIDLEKFTLIGATTRSGQLTGPLRDRFGVLL 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
            L  Y+IE LK IV R A + G+ + +E A EIA RSRGTPRIA RLL+RVRD+AEV   
Sbjct: 181 NLELYDIESLKKIVTRSAGVLGIGIDEEGAMEIARRSRGTPRIANRLLKRVRDYAEVRAD 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
            TIT+EI++  L  L +DK G D +D + +  +  NF GGPVG++TI+A   E R  IED
Sbjct: 241 GTITQEISNRGLNLLEVDKCGLDYVDRKIIMTMINNFDGGPVGVDTIAAATGEERITIED 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           + EPY++Q GFI RT RGR++   A++H  I
Sbjct: 301 VYEPYLLQIGFINRTSRGRIVTDKAYKHFNI 331


>gi|257125126|ref|YP_003163240.1| Holliday junction DNA helicase RuvB [Leptotrichia buccalis
           C-1013-b]
 gi|257049065|gb|ACV38249.1| Holliday junction DNA helicase RuvB [Leptotrichia buccalis
           C-1013-b]
          Length = 337

 Score =  364 bits (933), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 175/329 (53%), Positives = 237/329 (72%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M+ E +L      ED     LRPRT +E+ GQ +    + +FI+AAK R E+LDH+L  G
Sbjct: 1   MNEERILEPKELGEDNIQRSLRPRTFKEYIGQQDLKEKMNIFIKAAKMRNESLDHILLYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA V+A E+GVN + T+GPV+ KAGDLAA+LT+LE+ D+LFIDEIHRL+  V
Sbjct: 61  PPGLGKTTLAGVIATEMGVNLKITTGPVLEKAGDLAAILTSLEENDILFIDEIHRLNTSV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILYPAMED +LD+++G+GPSARS+++ L RFTLI ATTR G L+ PL+DRFG+  R+ 
Sbjct: 121 EEILYPAMEDGELDILIGKGPSARSIRVELPRFTLIGATTRAGQLSTPLRDRFGVTHRME 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y++E+LK I++RGA +  ++  ++   EIA RSRGTPRIA RLL+R RDFA V  +  +
Sbjct: 181 YYQLEELKEIIRRGANILNISYDEDGITEIAKRSRGTPRIANRLLKRARDFALVEGSGVL 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
            +E  D  L  L +D  G D+LD   L  I   + GGPVGIET+S  L E R  IE++ E
Sbjct: 241 EKESVDGILRLLGVDDNGLDELDRNILLSIINVYNGGPVGIETLSLLLGEDRRTIEEVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           PY+++ GFI+RTPRGR++    ++HLGI+
Sbjct: 301 PYLVKIGFIKRTPRGRVVTEFGYRHLGIE 329


>gi|329960656|ref|ZP_08298999.1| Holliday junction DNA helicase RuvB [Bacteroides fluxus YIT 12057]
 gi|328532529|gb|EGF59323.1| Holliday junction DNA helicase RuvB [Bacteroides fluxus YIT 12057]
          Length = 345

 Score =  364 bits (933), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 175/331 (52%), Positives = 236/331 (71%), Gaps = 4/331 (1%)

Query: 2   MDREGLLSRNVS----QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M++E    RN      +E    + LRP   E+F+GQ +   NL++F++AA+ R EALDHV
Sbjct: 1   MEQEDFDIRNQQFSSGKEKDFENALRPLNFEDFSGQDKVVDNLRIFVKAARLREEALDHV 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTL+ ++A ELGV F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRL
Sbjct: 61  LLHGPPGLGKTTLSNIIANELGVGFKITSGPVLDKPGDLAGILTSLEPNDVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           S +VEE LY AMED+++D+M+ +GPSARS++I+L+ FTL+ ATTR GLLT PL+ RFGI 
Sbjct: 121 SPVVEEYLYSAMEDYRIDIMIDKGPSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGIN 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
           + L +Y+ + L  I++R A +  +  +  AA EIA RSRGTPRIA  LLRRVRDFA+V  
Sbjct: 181 LHLEYYDDDVLSGIIRRSASILDVPCSARAAAEIAGRSRGTPRIANALLRRVRDFAQVKG 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
           + +I  EIA  AL  L IDK G D++D + L  I   F GGPVG+ TI+  L E    IE
Sbjct: 241 SGSIDTEIAQFALEALNIDKYGLDEIDNKILCTIIDKFKGGPVGLTTIATALGEDAGTIE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
           ++ EP++I++GF++RTPRGR +  +A++HLG
Sbjct: 301 EVYEPFLIKEGFLKRTPRGREVTELAYKHLG 331


>gi|270295000|ref|ZP_06201201.1| Holliday junction DNA helicase RuvB [Bacteroides sp. D20]
 gi|270274247|gb|EFA20108.1| Holliday junction DNA helicase RuvB [Bacteroides sp. D20]
          Length = 349

 Score =  364 bits (933), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 175/331 (52%), Positives = 237/331 (71%), Gaps = 4/331 (1%)

Query: 2   MDREGLLSRN----VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M++E    RN     S+E    + LRP   E+F+GQ +   NL++F++AA+ R EALDHV
Sbjct: 5   MEQEDFDIRNQQPVTSRERDFENALRPLNFEDFSGQDKVVDNLRIFVKAARLRGEALDHV 64

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTL+ ++A ELGV F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRL
Sbjct: 65  LLHGPPGLGKTTLSNIIANELGVGFKITSGPVLDKPGDLAGVLTSLEPNDVLFIDEIHRL 124

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           S +VEE LY AMED+++D+M+ +GPSARS++I+L+ FTL+ ATTR GLLT PL+ RFGI 
Sbjct: 125 SPVVEEYLYSAMEDYRIDIMIDKGPSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGIN 184

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
           + L +Y+ + L  I++R + +  +  +  AA EIA RSRGTPRIA  LLRRVRDFA+V  
Sbjct: 185 LHLEYYDDDVLSGIIRRSSGILDVPCSVRAAAEIASRSRGTPRIANALLRRVRDFAQVKG 244

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
           + +I  EIA  AL  L IDK G D++D + L  I   F GGPVG+ TI+  L E    IE
Sbjct: 245 SGSIDTEIAQFALEALNIDKYGLDEIDNKILCTIIDKFKGGPVGLTTIATALGEDAGTIE 304

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
           ++ EP++I++GF++RTPRGR +  +A++HLG
Sbjct: 305 EVYEPFLIKEGFLKRTPRGREVTELAYKHLG 335


>gi|15892456|ref|NP_360170.1| Holliday junction DNA helicase B [Rickettsia conorii str. Malish 7]
 gi|15619611|gb|AAL03071.1| holliday junction DNA helicase RuvB [Rickettsia conorii str. Malish
           7]
          Length = 354

 Score =  364 bits (933), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 196/329 (59%), Positives = 252/329 (76%), Gaps = 1/329 (0%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            +LS   S+ D ++  +RP  L+EF GQ +   NL VFI+AAK+R E LDH LF GPPGL
Sbjct: 15  NILSPEKSENDQELP-IRPSYLQEFVGQQQIKENLSVFIKAAKSRNEHLDHTLFYGPPGL 73

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLA++++ E+G NF+STSGP I K  DLAA+LTNLE  DVLFIDEIHRL+  VEE+L
Sbjct: 74  GKTTLAKIISNEIGGNFKSTSGPAILKVADLAAILTNLEKNDVLFIDEIHRLNTAVEEVL 133

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           YPAMEDF+LD+++GEG +ARSVKI L +FTLI ATTR+GLL+NPL+DRFGIP+RLNFY  
Sbjct: 134 YPAMEDFELDIIIGEGSAARSVKITLPKFTLIGATTRLGLLSNPLRDRFGIPMRLNFYNT 193

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
            +LK ++ R +KL  + +TD  + EIA RSRGTPRIA RLLRR+RDFA V     + +EI
Sbjct: 194 GELKKVLNRASKLLDIDLTDSGSEEIAKRSRGTPRIALRLLRRIRDFAAVDGKSRVDKEI 253

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           +D  L RL +D++G D  D RYL  IA N+ GGPVGIETI+A LSE RDA+E+ IEPY+I
Sbjct: 254 SDFGLNRLEVDRIGLDSNDYRYLKFIADNYNGGPVGIETIAAALSEQRDALEETIEPYLI 313

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           Q G +QRTPRGR++   A++HL + +P++
Sbjct: 314 QIGLLQRTPRGRVITIAAFEHLKMPVPNQ 342


>gi|73748445|ref|YP_307684.1| Holliday junction DNA helicase RuvB [Dehalococcoides sp. CBDB1]
 gi|147669225|ref|YP_001214043.1| Holliday junction DNA helicase B [Dehalococcoides sp. BAV1]
 gi|97190027|sp|Q3ZWZ9|RUVB_DEHSC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|189046030|sp|A5FRK7|RUVB_DEHSB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|73660161|emb|CAI82768.1| Holliday junction DNA helicase RuvB [Dehalococcoides sp. CBDB1]
 gi|146270173|gb|ABQ17165.1| Holliday junction DNA helicase RuvB [Dehalococcoides sp. BAV1]
          Length = 349

 Score =  364 bits (933), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 181/330 (54%), Positives = 237/330 (71%), Gaps = 1/330 (0%)

Query: 3   DREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           ++E L+S  +  +DA + + LRPR L +F GQ     NL V I+AAK R EALDHVL  G
Sbjct: 4   EKERLISGKLVTDDAKLDTSLRPRCLPDFIGQKRLKDNLGVAIQAAKQRGEALDHVLLYG 63

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTL+ ++A E+GVN R TSGP I + GDLAA+LTNL+  D+LFIDEIHRLS  V
Sbjct: 64  PPGLGKTTLSHIIALEMGVNIRITSGPAIERQGDLAAILTNLKPFDILFIDEIHRLSRNV 123

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMED+ LD+MVG+GP ARS+++ L  FTLI ATTR  +L+ PL+DRFG   RL+
Sbjct: 124 EEVLYPAMEDYALDIMVGKGPGARSLRLKLPHFTLIGATTRYAMLSAPLRDRFGSIFRLD 183

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY+ E +  IV+R A++ G+   +    +IA RSRGTPR+A RLLRRVRD+A+V     I
Sbjct: 184 FYDEEAIHDIVRRSARILGVEADENGLHQIACRSRGTPRVANRLLRRVRDYAQVKGNGLI 243

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T +IA  +L  L +DK+G D++D + L  I   FGGGPVG+ETI+A +SE  D I D+ E
Sbjct: 244 TADIAAESLACLEVDKLGLDEIDHKVLKTIIHKFGGGPVGLETIAAAISEEADTIMDVYE 303

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           PY++Q GF++RTPRGR    +A+QHL I  
Sbjct: 304 PYLLQLGFLERTPRGRQATRLAYQHLSIPY 333


>gi|110679370|ref|YP_682377.1| Holliday junction DNA helicase RuvB [Roseobacter denitrificans OCh
           114]
 gi|123361966|sp|Q168A2|RUVB_ROSDO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|109455486|gb|ABG31691.1| Holliday junction DNA helicase RuvB [Roseobacter denitrificans OCh
           114]
          Length = 340

 Score =  364 bits (933), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 210/333 (63%), Positives = 254/333 (76%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D +  +  +   ED D   LRP+ L EF GQ EA +NLKVFI +A+ R EA+DH LF 
Sbjct: 1   MSDIDPTVRADPLPEDHD-RALRPQMLSEFVGQAEARANLKVFIASARQRGEAMDHTLFH 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++ARELGV FR TSGPV+AKAGDLAA+LTNLE RDVLFIDEIHRL+  
Sbjct: 60  GPPGLGKTTLAQIMARELGVGFRMTSGPVLAKAGDLAAILTNLEKRDVLFIDEIHRLNPA 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPA+EDF+LDL++GEGP+AR+V+I L  FTL+ ATTR+GLLT PL+DRFGIP RL
Sbjct: 120 VEEVLYPALEDFELDLVIGEGPAARTVRIELQPFTLVGATTRMGLLTTPLRDRFGIPTRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  ++L  IV R A+  G    +  A EIA R+RGTPRIAGRLLRRV DFA V     
Sbjct: 180 QFYTEDELFIIVDRNARKLGAPADEGGAREIARRARGTPRIAGRLLRRVVDFAVVEGDGR 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +TR +AD AL RL +D +G D  D RYL +IA N+GGGPVGIET+SA LSE RDA+E++I
Sbjct: 240 VTRALADMALNRLGVDHLGLDGADRRYLRLIAENYGGGPVGIETMSAALSESRDALEEVI 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EP+++QQG IQRTPRGR+L    W HLG+D P 
Sbjct: 300 EPFLLQQGLIQRTPRGRMLAQKGWTHLGLDAPR 332


>gi|199598073|ref|ZP_03211496.1| Holliday junction DNA helicase B [Lactobacillus rhamnosus HN001]
 gi|229553781|ref|ZP_04442506.1| crossover junction endoribonuclease subunit B [Lactobacillus
           rhamnosus LMS2-1]
 gi|258507748|ref|YP_003170499.1| Holliday junction DNA helicase RuvB [Lactobacillus rhamnosus GG]
 gi|258538938|ref|YP_003173437.1| Holliday junction DNA helicase RuvB [Lactobacillus rhamnosus Lc
           705]
 gi|199590999|gb|EDY99082.1| Holliday junction DNA helicase B [Lactobacillus rhamnosus HN001]
 gi|229312855|gb|EEN78828.1| crossover junction endoribonuclease subunit B [Lactobacillus
           rhamnosus LMS2-1]
 gi|257147675|emb|CAR86648.1| Holliday junction DNA helicase RuvB [Lactobacillus rhamnosus GG]
 gi|257150614|emb|CAR89586.1| Holliday junction DNA helicase RuvB [Lactobacillus rhamnosus Lc
           705]
 gi|259649096|dbj|BAI41258.1| holliday junction DNA helicase RuvB [Lactobacillus rhamnosus GG]
          Length = 348

 Score =  364 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 171/333 (51%), Positives = 228/333 (68%), Gaps = 2/333 (0%)

Query: 3   DREGLLSRNVS--QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           +++ L+S ++    E      LRPR L ++ GQ      L V+I AAK R E+LDHVL  
Sbjct: 5   NKDRLVSGDIDDLNEAQIEKSLRPRRLAQYIGQDRVKHQLTVYITAAKQREESLDHVLLY 64

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA V+A E+GVN R+TSGP I K GDL ALL  L   DVLF+DEIHRL  I
Sbjct: 65  GPPGLGKTTLALVIANEMGVNIRTTSGPAIEKPGDLVALLNELRPGDVLFVDEIHRLPKI 124

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LY AMEDF +D++VG+GP+A  V   L  FTLI ATTR G+L+ PL+DRFGI   +
Sbjct: 125 VEEMLYSAMEDFYIDIVVGQGPTAHPVHFPLPPFTLIGATTRAGMLSAPLRDRFGISEHM 184

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y  +DL  IV+R A +  +A+  E A EIA RSRGTPR+A RLL+R+RDFAEVA    
Sbjct: 185 AYYSPDDLSEIVKRSANVFNMAIDAEGAYEIARRSRGTPRVANRLLKRIRDFAEVAGKSP 244

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +   + D AL +L +D  G DQ+D + LT + R++ GGPVG+ TI+A + E    IE++ 
Sbjct: 245 VDLAMVDHALDQLQVDAQGLDQIDRKLLTFMIRDYQGGPVGLSTIAANIGEEMATIEEMY 304

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY++Q GF++RTPRGR++ P  + H+G+ +P 
Sbjct: 305 EPYLLQIGFLKRTPRGRMVTPAGFAHMGMTMPQ 337


>gi|77464123|ref|YP_353627.1| Holliday junction DNA helicase RuvB [Rhodobacter sphaeroides 2.4.1]
 gi|126462966|ref|YP_001044080.1| Holliday junction DNA helicase RuvB [Rhodobacter sphaeroides ATCC
           17029]
 gi|221639990|ref|YP_002526252.1| Holliday junction DNA helicase RuvB [Rhodobacter sphaeroides KD131]
 gi|97190254|sp|Q3J0F8|RUVB_RHOS4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|166231544|sp|A3PLU2|RUVB_RHOS1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|254767437|sp|B9KKV4|RUVB_RHOSK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|77388541|gb|ABA79726.1| Holliday junction DNA helicase subunit RuvB [Rhodobacter
           sphaeroides 2.4.1]
 gi|126104630|gb|ABN77308.1| Holliday junction DNA helicase RuvB [Rhodobacter sphaeroides ATCC
           17029]
 gi|221160771|gb|ACM01751.1| Holliday junction ATP-dependent DNA helicase ruvB [Rhodobacter
           sphaeroides KD131]
          Length = 341

 Score =  364 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 212/333 (63%), Positives = 259/333 (77%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M   +  L      ED D   LRP++LEEF GQ EA +NL+VFIE+A+ R EA+DH LF 
Sbjct: 1   MTSSDPTLRPERLPEDMD-RALRPQSLEEFVGQAEARANLRVFIESARMRGEAMDHTLFH 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++ARELGV FR TSGPV+AK GDLAA+LTNLE RDVLFIDEIHRLS +
Sbjct: 60  GPPGLGKTTLAQIMARELGVGFRMTSGPVLAKPGDLAAILTNLEPRDVLFIDEIHRLSPV 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPA+EDF LDL++GEGP+AR+V+I+L  FTL+ ATTR+GLLT PL+DRFGIP RL
Sbjct: 120 VEEVLYPALEDFALDLVIGEGPAARTVRIDLQPFTLVGATTRLGLLTTPLRDRFGIPTRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  ++L  IV RGA++ G+    E   EIA R+RGTPRIAGRLLRRV DFA V     
Sbjct: 180 QFYTEDELDLIVARGARMMGVDSDPEGTREIARRARGTPRIAGRLLRRVVDFALVEGDGR 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +T+ IAD AL RL +D +G D  D RY+ +IA N+GGGPVGIETI+A LSE RDA+E++I
Sbjct: 240 LTQAIADRALTRLGVDHLGLDLGDRRYIGLIAENYGGGPVGIETIAAALSESRDAVEEVI 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY++QQG IQRTPRGR+L   AW+H+GI+ P 
Sbjct: 300 EPYLLQQGLIQRTPRGRMLAHKAWRHMGIEPPK 332


>gi|169831521|ref|YP_001717503.1| Holliday junction DNA helicase RuvB [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638365|gb|ACA59871.1| Holliday junction DNA helicase RuvB [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 344

 Score =  364 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 175/331 (52%), Positives = 227/331 (68%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M  + +++  +  ED D   LRPR L+EF GQ      L + IEAA+ R EALDHVL  G
Sbjct: 5   MLDQRIVAPGLKVEDVDEVTLRPRYLDEFIGQARVRETLALCIEAARRRGEALDHVLLYG 64

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++ARE+G N R TSGP I + GDLAA+LTNL   D+LFIDE+HRLS  V
Sbjct: 65  PPGLGKTTLAHIIAREMGGNIRVTSGPAIERPGDLAAILTNLGPGDILFIDEVHRLSRTV 124

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILYP MEDF LD+++G+GP ARS+++NL RFTL+ ATTR G LT+PL+DRFG+  RL 
Sbjct: 125 EEILYPGMEDFALDIVIGKGPGARSLRLNLPRFTLVGATTRAGHLTSPLRDRFGVVSRLE 184

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY  EDL  IV RGA +  + +    A  IA R+RGTPR+A RLL+RVRD+ +V     I
Sbjct: 185 FYSPEDLLAIVIRGAGIIRVDIEPAGAALIARRARGTPRVANRLLKRVRDYVQVRAQGVI 244

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T + A  AL  L ID++G D  D   L ++   FGGGPVG++T++A   E    +ED+ E
Sbjct: 245 TADNAVEALEFLGIDELGLDNTDRHLLAVLIEKFGGGPVGLDTLAAATGEEAANLEDVYE 304

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           PY++Q G I RT RGR+  P+A++H+G   P
Sbjct: 305 PYLLQSGLITRTSRGRVATPLAYRHMGSPQP 335


>gi|167629899|ref|YP_001680398.1| holliday junction DNA helicase ruvb [Heliobacterium modesticaldum
           Ice1]
 gi|238687888|sp|B0TF70|RUVB_HELMI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|167592639|gb|ABZ84387.1| holliday junction DNA helicase ruvb [Heliobacterium modesticaldum
           Ice1]
          Length = 370

 Score =  364 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 182/331 (54%), Positives = 237/331 (71%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD   + S    ++      LRPRTL E+ GQ +   NL VFI+AA  R E LDHVL  G
Sbjct: 1   MDERMMTSAKRPEDRETEWSLRPRTLREYIGQDKLKENLTVFIQAALGRREPLDHVLLYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLAQ++A+ELGV  R TSGP I + GDLAA+LTNL+  DVLFIDEIHRL+  V
Sbjct: 61  PPGLGKTTLAQIIAQELGVQLRVTSGPAIERPGDLAAILTNLQPMDVLFIDEIHRLNRAV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMEDF LD+++G+GP+ARS++I+L RFTL+ ATTR G+LT+PL+DRFG+  RL 
Sbjct: 121 EEVLYPAMEDFCLDIVIGKGPAARSIRIDLPRFTLVGATTRAGMLTSPLRDRFGVIHRLE 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y  ++L+ I+ R A + G+    E A EIA+RSRGTPRIA RLL+RVRD+A+V     +
Sbjct: 181 YYRPDELEFIILRAATILGVTAEPEGAREIALRSRGTPRIANRLLKRVRDYAQVLSDGVV 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T E+A  AL RL +D  G D  D R L  + R F GGPVG+ET++A + E  D +ED++E
Sbjct: 241 TGEVAREALRRLEVDPRGLDTTDQRLLEALIRKFAGGPVGVETLAASVGESVDTVEDVVE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           PY++Q GF+ RTPRGR+    A  HLG+ +P
Sbjct: 301 PYLMQLGFLNRTPRGRMATIAACAHLGVPVP 331


>gi|157803863|ref|YP_001492412.1| Holliday junction DNA helicase RuvB [Rickettsia canadensis str.
           McKiel]
 gi|166231548|sp|A8EZ44|RUVB_RICCK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|157785126|gb|ABV73627.1| Holliday junction DNA helicase RuvB [Rickettsia canadensis str.
           McKiel]
          Length = 342

 Score =  364 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 201/329 (61%), Positives = 255/329 (77%), Gaps = 1/329 (0%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            +LS   S+ D ++  +RP  L+EF GQ +   NL VFI+AAK+R E LDH LF GPPGL
Sbjct: 3   NILSPEKSENDQELP-IRPSYLQEFVGQQQIKENLLVFIKAAKSRNEHLDHTLFYGPPGL 61

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLA++V+ E+GVNF+STSGP I KA DLAA+LTNLE  DVLFIDEIHRL+  VEE+L
Sbjct: 62  GKTTLAKIVSNEIGVNFKSTSGPAILKAADLAAILTNLEKNDVLFIDEIHRLNTSVEEVL 121

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           YPAMEDF+LD+++GEGP+ARSVKINL  FTLI ATTR+GLL+NPL+DRFGIP+RLNFY  
Sbjct: 122 YPAMEDFELDIIIGEGPAARSVKINLPHFTLIGATTRLGLLSNPLRDRFGIPMRLNFYNN 181

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           ++LK ++ R +KL  + +T+  + EIA RSRGTPRIA RLLRR+RDFA V     + +EI
Sbjct: 182 DELKKVLNRASKLLDIDLTESGSEEIAKRSRGTPRIALRLLRRIRDFAVVDSKSVVDKEI 241

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           AD  L RL +D +G D  D RYL  IA N+ GGPVGIETI+A LSE RDA+E+ IEPY+I
Sbjct: 242 ADFGLNRLEVDHIGLDSNDYRYLKFIAANYNGGPVGIETIAAALSEQRDALEETIEPYLI 301

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           Q G +QRTPRGR++   A++HL + +P++
Sbjct: 302 QIGLLQRTPRGRVITIAAFEHLKMPVPNK 330


>gi|254441549|ref|ZP_05055042.1| Holliday junction DNA helicase RuvB [Octadecabacter antarcticus
           307]
 gi|198251627|gb|EDY75942.1| Holliday junction DNA helicase RuvB [Octadecabacter antarcticus
           307]
          Length = 345

 Score =  363 bits (932), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 215/337 (63%), Positives = 256/337 (75%), Gaps = 4/337 (1%)

Query: 1   MMD-REGLLSRNVSQEDAD---ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH 56
           M +  +  L      ED        LRP+ L EF GQ EA +NL VFIE+AK R EA+DH
Sbjct: 1   MTEPEDPSLQPERQSEDVAREGDRALRPQMLSEFVGQAEARANLAVFIESAKRRGEAMDH 60

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHR 116
            LF GPPGLGKTTLAQ++ARELGV FR TSGPV+AKAGDLAA+LTNLE +DVLFIDEIHR
Sbjct: 61  TLFHGPPGLGKTTLAQIMARELGVGFRMTSGPVLAKAGDLAAILTNLEAQDVLFIDEIHR 120

Query: 117 LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
           L+  VEE+LYPA+EDF+LDL++G GP+AR+V+I L  FTLI ATTR+GLLT PL+DRFGI
Sbjct: 121 LNPAVEEVLYPALEDFELDLVIGVGPAARTVRIELQPFTLIGATTRMGLLTTPLRDRFGI 180

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
           P RL FY +E+L  IV RGA+L G   T + A EIA R+RGTPRIAGRLLRRV DFA V 
Sbjct: 181 PTRLEFYTVEELHKIVTRGARLMGAPATPDGAQEIAKRARGTPRIAGRLLRRVVDFAIVE 240

Query: 237 HAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAI 296
              T+T  IAD+AL RL +D +G D  D RYLT+IA N+ GGPVGIET+SA LSE RDA+
Sbjct: 241 GDGTVTHAIADSALTRLGVDHLGLDSADRRYLTLIAENYQGGPVGIETMSAALSESRDAL 300

Query: 297 EDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           E++IEPY++QQG IQRTPRGR+L   AW HLG+  P 
Sbjct: 301 EEVIEPYLLQQGLIQRTPRGRMLAQKAWTHLGMAAPK 337


>gi|302335492|ref|YP_003800699.1| Holliday junction DNA helicase subunit RuvB [Olsenella uli DSM
           7084]
 gi|301319332|gb|ADK67819.1| Holliday junction DNA helicase subunit RuvB [Olsenella uli DSM
           7084]
          Length = 356

 Score =  363 bits (932), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 175/329 (53%), Positives = 240/329 (72%), Gaps = 1/329 (0%)

Query: 5   EGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           +  +S  ++ +D D+   LRP TL+E+ GQ     NL+V I AAK R E LDHVLF GPP
Sbjct: 25  QRSVSAELTTDDLDVEHSLRPVTLDEYCGQERVRENLRVLIAAAKDRHETLDHVLFSGPP 84

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA VVA E+G   R+TSGP IA+ GDLAA+LTNLE+ DVLF+DEIHRL+  VEE
Sbjct: 85  GLGKTTLANVVANEMGARLRTTSGPAIARTGDLAAILTNLEEGDVLFVDEIHRLNHQVEE 144

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LYPAMEDF LD+++G+GP+ARS+++++  FTL+ ATTR GLLT PL+DRFGI  RL++Y
Sbjct: 145 VLYPAMEDFFLDIVIGKGPAARSIRLDVPHFTLVGATTRTGLLTGPLRDRFGISYRLDYY 204

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            IE+L  IV+R A++ G+ + D+ A EIA RSRGTPR+A RLL+RVRD+A+V    ++  
Sbjct: 205 TIEELAGIVRRSARILGVEIDDQGAAEIASRSRGTPRLANRLLKRVRDYAQVKAQGSVAW 264

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           ++A  AL    ID+MG D +D++ L  + R F G  VG+ TI++ + E    +ED+ EPY
Sbjct: 265 DVAAEALSFFEIDEMGLDWMDVKILEALTRTFRGRAVGLTTIASAVGEDPSTLEDVYEPY 324

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++Q+G I RTP+GR    +A++HLG+  P
Sbjct: 325 LLQRGLIVRTPQGRQATSLAFEHLGVASP 353


>gi|299822807|ref|ZP_07054693.1| crossover junction ATP-dependent DNA helicase RuvB [Listeria grayi
           DSM 20601]
 gi|299816336|gb|EFI83574.1| crossover junction ATP-dependent DNA helicase RuvB [Listeria grayi
           DSM 20601]
          Length = 337

 Score =  363 bits (932), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 182/333 (54%), Positives = 229/333 (68%), Gaps = 2/333 (0%)

Query: 1   MMDREGLLSRNV--SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M   E ++S      +E++    LRP+ L  + GQ +   NLK+FIEAAK R EALDHVL
Sbjct: 1   MDMEERIISGESVNPEEESFEMSLRPQLLAHYIGQDKVKDNLKIFIEAAKKRNEALDHVL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA V+A E+G   R+TSGP I + GDLA +LT+LE  DVLFIDEIHRLS
Sbjct: 61  LYGPPGLGKTTLAMVIANEMGAGIRTTSGPAIERPGDLATILTSLEPGDVLFIDEIHRLS 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
             VEEILYPAMED+ +D+++G GP+A+SV+++L  FTLI ATTR G L+ PL+DRFG+  
Sbjct: 121 RTVEEILYPAMEDYFIDIVIGNGPTAKSVRLDLPPFTLIGATTRAGQLSAPLRDRFGVID 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
            L FY    L+ I+ R A +    V    A EIA RSRGTPRIA RLL+RVRDFA+V   
Sbjct: 181 HLEFYTEAQLEAIITRTASILDTEVDVPGAEEIARRSRGTPRIANRLLKRVRDFADVKAD 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             +T  +A  AL  L +D  G D +D R L  I  +FGGGPVGIETI+A + E R+ IED
Sbjct: 241 GYVTERLAKEALELLRVDPRGLDTIDQRLLQTIIHSFGGGPVGIETIAASIGEERETIED 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           + EPY++Q GF+QRTPRGRL+   A+ HLGI  
Sbjct: 301 MQEPYLLQIGFLQRTPRGRLVTERAYNHLGISY 333


>gi|300870481|ref|YP_003785352.1| Holliday junction DNA helicase RuvB [Brachyspira pilosicoli
           95/1000]
 gi|300688180|gb|ADK30851.1| holliday junction DNA helicase, RuvB [Brachyspira pilosicoli
           95/1000]
          Length = 344

 Score =  363 bits (932), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 181/330 (54%), Positives = 237/330 (71%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD+E + + N +  D + S +RP+   +F GQ    S LKVFI++AK R  +LDH+LF G
Sbjct: 1   MDKESITNSNENSYDVNNSSIRPKGFNDFIGQENIKSKLKVFIDSAKKRDVSLDHILFYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLAQ++A ELG N ++TS PVI + GDLA++LT L ++D+LFIDEIHRL  +V
Sbjct: 61  PPGLGKTTLAQIIAEELGSNIKATSAPVIERPGDLASILTTLGEKDILFIDEIHRLRTVV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMEDF +D+ VGEG SA+S ++ L +FTLI ATTR GLL+ PL DRFGI  RL 
Sbjct: 121 EEVLYSAMEDFFVDIKVGEGTSAKSFRVKLPKFTLIGATTRSGLLSTPLYDRFGIVERLE 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY  EDL  IV+R +K   + +TD AA  IA RSRGTPRI  RLLRRV DFA V+    I
Sbjct: 181 FYTNEDLADIVKRSSKFLNIDITDSAAISIASRSRGTPRIVNRLLRRVFDFATVSDVLKI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
             + A  +L +L +DK GF+ LD +YL  I +N+ GGPVG++TIS  LSE  + IED+IE
Sbjct: 241 DEKFASESLEKLGVDKNGFEALDKQYLDTIIKNYNGGPVGVDTISVSLSEQIETIEDVIE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           PY+IQ GFI+RTP+GR+    A+ +L I++
Sbjct: 301 PYLIQSGFIKRTPKGRVATIKAYSYLNINV 330


>gi|114566955|ref|YP_754109.1| Holliday junction DNA helicase RuvB [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|122318041|sp|Q0AX16|RUVB_SYNWW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|114337890|gb|ABI68738.1| Holliday junction DNA helicase subunit RuvB [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
          Length = 344

 Score =  363 bits (932), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 170/330 (51%), Positives = 233/330 (70%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M+D   + S  + ++D + + +RP  L E+ GQ +   N++VFI AA+ R E+LDHVL  
Sbjct: 1   MLDERLISSHLLDEDDNNENSIRPGRLSEYIGQEKVKENVEVFITAARERKESLDHVLLS 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A E+G   R TSGP I + GDLAA+LTNLE  +VLFIDEIHRL+  
Sbjct: 61  GPPGLGKTTLASIIANEVGKPIRKTSGPAIERPGDLAAILTNLEPGEVLFIDEIHRLNRN 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEI+YPAMED+ +D+++G+GP+AR+++++L  FTLI ATTR GLL++PL+DRFGI  RL
Sbjct: 121 VEEIMYPAMEDYVIDIIIGKGPAARTLRLDLPPFTLIGATTRPGLLSSPLRDRFGISCRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           +FY   +L  I+ R A++  +++  E A EIA RSRGTPR+A RLLRRVRD+A V     
Sbjct: 181 DFYTPLELSEIILRAARILEISLDKEGATEIAGRSRGTPRVANRLLRRVRDYALVKGNGN 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I   +A  AL  L ID+ G D +D   L  I   F GGPVG++T++A +SE  D I D+ 
Sbjct: 241 IDFSLAKWALEMLEIDECGLDVMDRMILEAIIGKFSGGPVGLDTLAASVSEESDTISDVY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           EPY+++ GFIQ+TPRGR+    A++HLG  
Sbjct: 301 EPYLLKLGFIQKTPRGRMATEHAYRHLGYP 330


>gi|313623658|gb|EFR93814.1| holliday junction DNA helicase RuvB [Listeria innocua FSL J1-023]
          Length = 335

 Score =  363 bits (932), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 178/331 (53%), Positives = 230/331 (69%), Gaps = 1/331 (0%)

Query: 2   MDREGLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD   + S  V  E+ +  + LRP+TL ++ GQ +  +NL VFIEAA  R EALDHVL  
Sbjct: 1   MDERIISSETVDAEEVSFETSLRPQTLSQYIGQDKVKNNLTVFIEAATLRNEALDHVLLY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA V+A E+G   ++TSGP I + GDLA +LT+LE  DVLFIDEI   S  
Sbjct: 61  GPPGLGKTTLAMVIASEMGSEIKTTSGPAIERPGDLATILTSLEPGDVLFIDEIXXXSRA 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EEILYPAMED+ LD+++G GP+ARSV+++L  FTLI ATTR GLL+ PL+DRFG+   L
Sbjct: 121 IEEILYPAMEDYCLDIVIGTGPTARSVRLDLPPFTLIGATTRAGLLSAPLRDRFGVIDHL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  E L  IV R + +    + D  A EIA RSRGTPRIA RLL+RVRDFA+V    T
Sbjct: 181 EFYTEEQLTEIVLRTSGILDTKIDDLGAREIARRSRGTPRIANRLLKRVRDFAQVRGNGT 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +T ++A  AL  L +D  G D +D + L  I ++F GGPVG++TI+A + E R+ IED+ 
Sbjct: 241 VTEKLAKEALTLLQVDPRGLDTIDQKLLHTIIQSFRGGPVGLDTIAASIGEERETIEDMQ 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           EPY++Q GF+QRTPRGR+    A+ HLGI  
Sbjct: 301 EPYLLQIGFLQRTPRGRIATETAYNHLGISY 331


>gi|297584757|ref|YP_003700537.1| Holliday junction DNA helicase RuvB [Bacillus selenitireducens
           MLS10]
 gi|297143214|gb|ADH99971.1| Holliday junction DNA helicase RuvB [Bacillus selenitireducens
           MLS10]
          Length = 333

 Score =  363 bits (932), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 178/333 (53%), Positives = 239/333 (71%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD   +    + QE+ +   LRP+ L+++ GQ +   NL VFIEAA+ R EALDHVL  G
Sbjct: 1   MDERIVSGEALEQEEFEELSLRPQRLQQYIGQHQVKDNLTVFIEAARMREEALDHVLLYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A ELGV  R+TSGP I + GDLAA+LT LE  DVLFIDEIHRL+  V
Sbjct: 61  PPGLGKTTLATIIANELGVQIRTTSGPAIERPGDLAAVLTALEPGDVLFIDEIHRLNRAV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMEDF LD+++G+GPSARSVK++L  FTL+ ATTR GLL+ PL+DRFG+  RL 
Sbjct: 121 EEVLYPAMEDFFLDIVIGKGPSARSVKLDLPPFTLVGATTRAGLLSAPLRDRFGVLSRLE 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y   DL  IVQR A++  + +   ++ E+A RSRGTPR+A R+LRRVRDFA+V     I
Sbjct: 181 YYTEADLNEIVQRTAQVLDVEMAGTSSVEVARRSRGTPRVANRILRRVRDFAQVRGDGII 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T  +A  AL  L +D +G D +D + L  +   F GGPVG++TI+A + E  D IED+ E
Sbjct: 241 TDALAKEALDLLQVDPLGLDHIDHKLLKNLIHTFRGGPVGLDTIAATVGEEPDTIEDVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           PY++Q GF+QRTPRGR++ P+ ++H  +++P +
Sbjct: 301 PYLMQIGFLQRTPRGRVVTPLVYEHFKLEVPKQ 333


>gi|29654861|ref|NP_820553.1| Holliday junction DNA helicase RuvB [Coxiella burnetii RSA 493]
 gi|153208757|ref|ZP_01946995.1| Holliday junction DNA helicase RuvB [Coxiella burnetii 'MSU Goat
           Q177']
 gi|154706412|ref|YP_001423838.1| Holliday junction DNA helicase RuvB [Coxiella burnetii Dugway
           5J108-111]
 gi|161829825|ref|YP_001597406.1| Holliday junction DNA helicase RuvB [Coxiella burnetii RSA 331]
 gi|165918690|ref|ZP_02218776.1| Holliday junction DNA helicase RuvB [Coxiella burnetii RSA 334]
 gi|212219282|ref|YP_002306069.1| Holliday junction DNA helicase RuvB [Coxiella burnetii CbuK_Q154]
 gi|44888457|sp|Q83BE0|RUVB_COXBU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|189046028|sp|A9KF39|RUVB_COXBN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|189046029|sp|A9N9A3|RUVB_COXBR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|226698772|sp|B6J507|RUVB_COXB1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|29542130|gb|AAO91067.1| holliday junction DNA helicase [Coxiella burnetii RSA 493]
 gi|120575789|gb|EAX32413.1| Holliday junction DNA helicase RuvB [Coxiella burnetii 'MSU Goat
           Q177']
 gi|154355698|gb|ABS77160.1| holliday junction DNA helicase [Coxiella burnetii Dugway 5J108-111]
 gi|161761692|gb|ABX77334.1| Holliday junction DNA helicase RuvB [Coxiella burnetii RSA 331]
 gi|165917625|gb|EDR36229.1| Holliday junction DNA helicase RuvB [Coxiella burnetii RSA 334]
 gi|212013544|gb|ACJ20924.1| holliday junction DNA helicase [Coxiella burnetii CbuK_Q154]
          Length = 351

 Score =  363 bits (932), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 183/332 (55%), Positives = 232/332 (69%), Gaps = 1/332 (0%)

Query: 4   REGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
              L+   V   + D+   +RP+ L ++ GQ      + +FI AA  R EALDHVL  GP
Sbjct: 6   ETRLIGATVQSNEPDLERSIRPKRLSDYIGQAAVREQMDIFIRAATNRREALDHVLIFGP 65

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++A E+    + TSGPV+ KAGDLAALLTNLE  DVLFIDEIHRL+  +E
Sbjct: 66  PGLGKTTLAHIIAHEMQAGLKQTSGPVLEKAGDLAALLTNLEPHDVLFIDEIHRLNPAIE 125

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPA+EDFQLD+++GEGPSARS+K++L  FTL+ ATTR GLLT+PL+DRFGI  RL F
Sbjct: 126 EVLYPALEDFQLDIIIGEGPSARSIKLDLPPFTLVGATTRAGLLTSPLRDRFGIVQRLEF 185

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y I DL  IV+R A +  + + +  A EIA RSRGTPRIA RLLRRVRDFAEV     I 
Sbjct: 186 YRIPDLIHIVKRAAHILNVVIDENGAGEIARRSRGTPRIANRLLRRVRDFAEVRANGMIN 245

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             IA  AL  L +D  G D +D + L  I + F GGPVGIE+++A +SE R  IED+IEP
Sbjct: 246 ESIAKEALDLLNVDIRGLDVMDRKLLETIIKKFQGGPVGIESLAAAISEERGTIEDVIEP 305

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           Y+IQ+GFI RTPRGR+   + +QH  + +P +
Sbjct: 306 YLIQEGFILRTPRGRIATELTYQHFKLPLPTQ 337


>gi|320161389|ref|YP_004174613.1| Holliday junction ATP-dependent DNA helicase RuvB [Anaerolinea
           thermophila UNI-1]
 gi|319995242|dbj|BAJ64013.1| Holliday junction ATP-dependent DNA helicase RuvB [Anaerolinea
           thermophila UNI-1]
          Length = 344

 Score =  363 bits (932), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 169/334 (50%), Positives = 233/334 (69%), Gaps = 1/334 (0%)

Query: 1   MMD-REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M D  +  +S N   ++     LRP  L++F GQ +   NL + I AA+ R E L+HVLF
Sbjct: 1   MSDTSQRFISPNPMPDEPVDPALRPVRLKDFIGQDQIRENLSILITAARQRNEPLEHVLF 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA V+A E+GVN + T+GP I KAGDLAA+LTNL+  D+LFIDEIHRL  
Sbjct: 61  YGPPGLGKTTLAHVLANEMGVNIKITAGPAIEKAGDLAAILTNLKGGDILFIDEIHRLGK 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            +EE+LYPAMEDF LD+M+G+GP+ARS+++ L RFT+I ATTR+ L++ PL+ RFG   R
Sbjct: 121 AIEEVLYPAMEDFALDIMIGKGPAARSIRLKLPRFTVIGATTRLALISAPLRARFGAVYR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L++Y++  ++ I++R A    + V  E   EIA R+RGTPR+A RLLRRVRDFA+V H  
Sbjct: 181 LDYYDVNAIEAILKRAASRLQMTVEPEGFREIAHRARGTPRVALRLLRRVRDFAQVRHQG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            +T+ +A  AL  L +D +G D++D R L+ I   + GGPVG+ TI+A + E  D I D+
Sbjct: 241 LVTQAVAAEALNLLNVDPLGLDEVDRRVLSTIILKYNGGPVGLNTIAASIGEEPDTIMDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +EPY++Q GF+ RTP+GR+    A++HL I  P 
Sbjct: 301 VEPYLLQLGFLDRTPQGRVATQRAYEHLSIPYPQ 334


>gi|160915301|ref|ZP_02077514.1| hypothetical protein EUBDOL_01310 [Eubacterium dolichum DSM 3991]
 gi|158433100|gb|EDP11389.1| hypothetical protein EUBDOL_01310 [Eubacterium dolichum DSM 3991]
          Length = 336

 Score =  363 bits (931), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 173/327 (52%), Positives = 235/327 (71%), Gaps = 2/327 (0%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           E ++S +    D D + LRP+ L+E+ GQ +   NL++FIEAAK R EALDHVL  GPPG
Sbjct: 2   ERIVSADTQALD-DEATLRPQHLDEYIGQRQLKENLQIFIEAAKQRNEALDHVLLYGPPG 60

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTL+ ++A E+G N ++TSGP I K+GDLAA+L+ L+  DVLFIDEIHRL   VEE+
Sbjct: 61  LGKTTLSYILANEMGGNIKTTSGPSIEKSGDLAAILSTLQPGDVLFIDEIHRLPKQVEEV 120

Query: 125 LYPAMEDFQLDLMVGEG-PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           LYPAMED+ +D++VG+   + RS++++L  FTL+ ATTR G LT PL+DRFGI  +L FY
Sbjct: 121 LYPAMEDYCIDILVGKDSTTTRSIRLDLPPFTLVGATTRAGDLTAPLRDRFGIVSQLEFY 180

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           E+E+L+ I+ R A++    +   A  EIA+RSRGTPRIA RL RRVRDFA+V +   I++
Sbjct: 181 ELEELQQIIARTARVMNTEIESSAVTEIALRSRGTPRIANRLFRRVRDFAQVMNDGVISK 240

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           EIA  AL RL +D +G D +D +YL  I   F GGPVG+E +++ + E    +ED+ EPY
Sbjct: 241 EIAAMALDRLKVDHLGLDNVDHKYLKGIIERFKGGPVGLEALASSIGEETMTLEDVYEPY 300

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGID 330
           ++Q GFI RTPRGR++   A+ HLG D
Sbjct: 301 LLQIGFINRTPRGRIVTEKAYAHLGYD 327


>gi|262373116|ref|ZP_06066395.1| Holliday junction DNA helicase RuvB [Acinetobacter junii SH205]
 gi|262313141|gb|EEY94226.1| Holliday junction DNA helicase RuvB [Acinetobacter junii SH205]
          Length = 331

 Score =  363 bits (931), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 183/330 (55%), Positives = 241/330 (73%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           ++ L+S     ED     +RP +L ++ GQ      +++FI AA+ R EALDH L  GPP
Sbjct: 2   QDRLISGIEKPEDHFDRAIRPTSLADYIGQPVVREQMEIFIGAARGRGEALDHTLIFGPP 61

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++ARE+G N +STSGPV+ +AGDLAA+LTNLE+ DVLFIDEIHRLS ++EE
Sbjct: 62  GLGKTTLANIIAREMGGNLKSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPVIEE 121

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILYPAMED+QLD+M+GEGP+ARS+K++L  FTL+AATTR GLLT+PL+DRFGI  RL FY
Sbjct: 122 ILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRLEFY 181

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            +EDL  IV R A L  + +T E + EIA R+RGTPRIA RLLRRVRD+A+V     +T+
Sbjct: 182 SVEDLTHIVTRSANLMDVPITREGSTEIARRARGTPRIANRLLRRVRDYAQVKGTGEVTQ 241

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           E+A  AL  L +DK G D LD RY++M+   F G P G+E ++A ++E    +ED+IEPY
Sbjct: 242 EMAQRALDMLNVDKAGLDTLDRRYISMLLERFEGRPTGVEALAAAMAEDSGTLEDVIEPY 301

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +IQQG++ RT RGR+   +A+   GI  P 
Sbjct: 302 LIQQGYVMRTARGRIATNMAYLQFGITPPE 331


>gi|320352804|ref|YP_004194143.1| Holliday junction DNA helicase RuvB [Desulfobulbus propionicus DSM
           2032]
 gi|320121306|gb|ADW16852.1| Holliday junction DNA helicase RuvB [Desulfobulbus propionicus DSM
           2032]
          Length = 355

 Score =  363 bits (931), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 180/326 (55%), Positives = 239/326 (73%), Gaps = 1/326 (0%)

Query: 6   GLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
            L++     ED  I + +RPR LEE+ GQ +   +L+VFI+AA  R E LDHVLF G PG
Sbjct: 11  RLVAGGEHPEDLGIGTEIRPRRLEEYIGQDQVKQSLRVFIQAALQRGEPLDHVLFHGFPG 70

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLA ++A E+G   + TSGPVI + GDLAA+LT+L+  DVLFIDEIHRL+ +VEEI
Sbjct: 71  LGKTTLAYIIANEMGAGIKVTSGPVIERPGDLAAILTSLQAGDVLFIDEIHRLNHVVEEI 130

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPAMEDFQLDL++G+GP ARSVK++L RFTL+ ATTR GLLT PL+DRFG+ +RL +Y 
Sbjct: 131 LYPAMEDFQLDLVIGQGPGARSVKMDLPRFTLVGATTRTGLLTPPLRDRFGVVLRLEYYS 190

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            E L TI+QR A+L  + + ++ A E+  RSRGTPRIA RLLRRVRDF+EV   + +TRE
Sbjct: 191 PEQLVTIIQRTARLFRIEIDEDGAMELGRRSRGTPRIANRLLRRVRDFSEVGGHRVVTRE 250

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +ADAAL  L +D +G D++D R L  +   F GGP+G+ET+S  + E +  +ED+ EP++
Sbjct: 251 VADAALTMLNVDPLGLDEMDRRILLTLIEKFQGGPIGLETLSTAVCEEKTTLEDVYEPFL 310

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGID 330
           IQ GF+ RTPRGR+    A++H  + 
Sbjct: 311 IQSGFLVRTPRGRMATAAAYEHFRLP 336


>gi|148261886|ref|YP_001236013.1| Holliday junction DNA helicase B [Acidiphilium cryptum JF-5]
 gi|326405390|ref|YP_004285472.1| Holliday junction ATP-dependent DNA helicase RuvB [Acidiphilium
           multivorum AIU301]
 gi|146403567|gb|ABQ32094.1| Holliday junction DNA helicase RuvB [Acidiphilium cryptum JF-5]
 gi|325052252|dbj|BAJ82590.1| Holliday junction ATP-dependent DNA helicase RuvB [Acidiphilium
           multivorum AIU301]
          Length = 347

 Score =  363 bits (931), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 209/330 (63%), Positives = 251/330 (76%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           +   LLS     ED   + LRP+TL EFTGQ  +  NL +FI AA+ R E+LDHVL  GP
Sbjct: 5   EDRALLSGARDAEDGPEAALRPQTLAEFTGQKASRENLAIFIAAARGRGESLDHVLLHGP 64

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLAQ++ARE+GV FR+TSGP+I K+GDLAA+LTNL+ RDVLFIDEIHRL   +E
Sbjct: 65  PGLGKTTLAQIIAREMGVGFRATSGPIIQKSGDLAAILTNLQPRDVLFIDEIHRLQPSIE 124

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMEDF LDL++GEGP ARSV+I+L RFTLI ATTR GLL NPL+DRFGIP+RL F
Sbjct: 125 EVLYPAMEDFVLDLIIGEGPGARSVRIDLPRFTLIGATTRSGLLANPLRDRFGIPLRLVF 184

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  E+L  IV R A L  + +T + A EIA RSRGTPRIAGRL RRVRDFA VA    + 
Sbjct: 185 YTPEELTLIVTRAATLLEMDITADGAAEIARRSRGTPRIAGRLTRRVRDFAAVAGTARVD 244

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           R  ADAAL RL +D+ G D +D RYL  IA +  GGPVGIET++A LSEPRD +ED+IEP
Sbjct: 245 RAAADAALTRLDVDQRGLDAMDRRYLRRIAEHHNGGPVGIETLAAALSEPRDTLEDVIEP 304

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++IQ+GF+ RTPRGR+L   AW HLG+  P
Sbjct: 305 FLIQEGFVIRTPRGRMLGREAWAHLGLLPP 334


>gi|291519344|emb|CBK74565.1| Holliday junction DNA helicase, RuvB subunit [Butyrivibrio
           fibrisolvens 16/4]
          Length = 337

 Score =  363 bits (931), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 163/334 (48%), Positives = 224/334 (67%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M+  + + S   S ED  + + LRP++ + + GQ +   N+K++IEAAK R +ALDHVL 
Sbjct: 1   MLSNKQITSTIASHEDLVNDNALRPKSFDGYIGQTKVKENMKIYIEAAKNRGDALDHVLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+G N + TSGP I   G++ A+L  L+D D+LFIDEIHRLS 
Sbjct: 61  YGPPGLGKTTLAGIVAGEMGSNIKVTSGPAITIPGEIVAVLMTLKDGDILFIDEIHRLSK 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEE LY AMEDF +D+++G+  +ARS+   L RFTLI ATTR GLL+ PL+DRFGI   
Sbjct: 121 PVEETLYSAMEDFAVDIVMGKDTTARSIHTKLPRFTLIGATTRPGLLSAPLRDRFGIIGH 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           +++Y  E+L TIV   A      +  E A +IA+RSRGTPR+A R L+RVRD+AEV +  
Sbjct: 181 MDYYTPEELSTIVTASAAKLNAPIDYEGAYQIALRSRGTPRLANRYLKRVRDYAEVRYDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT+E+A A L  L +D +G D  D   L  I   FGGGPVG++ ++A + E    IED+
Sbjct: 241 AITKEVASATLDSLEVDTLGLDYNDRSILLAIIERFGGGPVGLDNLAATVGEDSGTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            EPY++Q G I RTP+GR+   +A++H  + +P 
Sbjct: 301 YEPYLLQHGLIIRTPKGRVATKLAYEHFNMPVPE 334


>gi|260887320|ref|ZP_05898583.1| holliday junction DNA helicase RuvB [Selenomonas sputigena ATCC
           35185]
 gi|330838927|ref|YP_004413507.1| Holliday junction DNA helicase RuvB [Selenomonas sputigena ATCC
           35185]
 gi|260862956|gb|EEX77456.1| holliday junction DNA helicase RuvB [Selenomonas sputigena ATCC
           35185]
 gi|329746691|gb|AEC00048.1| Holliday junction DNA helicase RuvB [Selenomonas sputigena ATCC
           35185]
          Length = 337

 Score =  363 bits (931), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 185/332 (55%), Positives = 245/332 (73%), Gaps = 1/332 (0%)

Query: 1   MMDRE-GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M + E  +++++   ED     LRPR L E+ GQ +A  NLKVF++AA  R EALDHVL 
Sbjct: 1   MEEMEGRIIAQDERTEDTWQYSLRPRKLAEYIGQKKAKENLKVFVQAALNRGEALDHVLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A ELGVNFR TSGP I ++GDLAALLTNL +RDVLFIDEIHRLS 
Sbjct: 61  YGPPGLGKTTLAGIIANELGVNFRITSGPAIERSGDLAALLTNLGERDVLFIDEIHRLSR 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEE+LY AMEDF LD+++G+GPSARS++++++ FTL+ ATT+ G L  PL+DRFG+  R
Sbjct: 121 SVEEVLYSAMEDFALDIIIGKGPSARSIRLDIAPFTLVGATTKAGALAAPLRDRFGVISR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +YE  +L  I++R A++  +++    A +IA RSRGTPR+A RLL+RVRDFA+V  A 
Sbjct: 181 LEYYEPSELMHIIERAAEILQISIERSGAEKIARRSRGTPRVANRLLKRVRDFAQVEGAA 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT  IADAAL RL +D++G D  D R L  + + F GGPVG+ET++A +SE  D IE +
Sbjct: 241 AITAAIADAALDRLEVDRIGLDHTDRRMLLTMIQKFAGGPVGLETLAAAISEESDTIEGV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
            EPY++Q GFI RTPRGR++   A++HLG+  
Sbjct: 301 YEPYLLQLGFINRTPRGRIVTRAAYEHLGVPY 332


>gi|163753882|ref|ZP_02161005.1| Holliday junction DNA helicase RuvB [Kordia algicida OT-1]
 gi|161326096|gb|EDP97422.1| Holliday junction DNA helicase RuvB [Kordia algicida OT-1]
          Length = 340

 Score =  362 bits (930), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 187/329 (56%), Positives = 239/329 (72%), Gaps = 1/329 (0%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M D     ++N S E+ DI   LRP + E+FTGQ +   NL+VF++AA  R EALDH LF
Sbjct: 1   MNDNLDPTNQNYSPEENDIEKALRPLSFEDFTGQDQVLENLQVFVQAANLREEALDHTLF 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A EL V+ + TSGPV+ K GDLA LLTNL++RDVLFIDEIHRLS 
Sbjct: 61  HGPPGLGKTTLAHILASELDVSIKVTSGPVLDKPGDLAGLLTNLDERDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           IVEE LY AMED+++D+M+  GP+AR+V+INL+ FTL+ ATTR GLLT P++ RFGI  R
Sbjct: 121 IVEEYLYSAMEDYKIDIMIESGPNARTVQINLNPFTLVGATTRSGLLTAPMRARFGIASR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y  E L TIVQR A++  + ++ EAA EIA RSRGTPRIA  LLRRVRDFA++    
Sbjct: 181 LQYYSTELLSTIVQRSAQILNVPISMEAAIEIAGRSRGTPRIANALLRRVRDFAQIKGNG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           TI  EIA   L  L +D  G D++D R L+ I   F GGPVGI T++  +SE  + IE++
Sbjct: 241 TIDIEIARFGLKALNVDAYGLDEMDNRILSTIIDKFKGGPVGITTLATAVSESGETIEEV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
            EP++IQQGFI RTPRGR +  +A++HLG
Sbjct: 301 YEPFLIQQGFIIRTPRGREVTELAYKHLG 329


>gi|56963320|ref|YP_175051.1| Holliday junction DNA helicase RuvB [Bacillus clausii KSM-K16]
 gi|68715275|sp|Q5WHR5|RUVB_BACSK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|56909563|dbj|BAD64090.1| holliday junction DNA helicase RuvB [Bacillus clausii KSM-K16]
          Length = 333

 Score =  362 bits (930), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 175/328 (53%), Positives = 234/328 (71%), Gaps = 1/328 (0%)

Query: 4   REGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
            E ++S   ++ E+     LRP+ L ++ GQ     NL VF+EAAK R EALDHVL  GP
Sbjct: 2   EERIVSAEATELEEQSEQGLRPKRLADYIGQETVKHNLAVFMEAAKMREEALDHVLLYGP 61

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++A E+G   R+TSGP I ++GDLAA+LT LE  DVLFIDEIHRL+  VE
Sbjct: 62  PGLGKTTLAAIIAAEMGGELRTTSGPAIERSGDLAAILTALEPGDVLFIDEIHRLNRTVE 121

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMEDF LD+++G+GP+ARSV+++L  FTL+ ATTR G+L++PL+DRFG+  RL +
Sbjct: 122 EVLYPAMEDFCLDIVIGKGPTARSVRLDLPPFTLVGATTRAGMLSSPLRDRFGVMARLEY 181

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y+ E+L  IV+R A +    +   AA E+A RSRGTPRIA RLLRRVRDFA+V     I+
Sbjct: 182 YKPEELAQIVERSATVFQATLEPSAALELARRSRGTPRIANRLLRRVRDFAQVGGEAAIS 241

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            E A +AL +L +D +G D +D + L  +   F GGPVG+ETI+A + E    IE++ EP
Sbjct: 242 LERACSALEQLHVDPLGLDHIDDKLLKGMIEKFNGGPVGLETIAATIGEEAATIEEVYEP 301

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           Y++Q GFIQRTPRGR+  P  + H G++
Sbjct: 302 YLLQIGFIQRTPRGRIATPACYAHYGVE 329


>gi|240142617|ref|YP_002967130.1| ATP-dependent DNA helicase, component of RuvABC resolvasome
           [Methylobacterium extorquens AM1]
 gi|240012564|gb|ACS43789.1| ATP-dependent DNA helicase, component of RuvABC resolvasome
           [Methylobacterium extorquens AM1]
          Length = 344

 Score =  362 bits (930), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 213/313 (68%), Positives = 253/313 (80%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP +L +F GQ  A   L+++I+AA+ R +ALDHVLFVGPPGLGKTTLAQ+VARELGVN
Sbjct: 18  IRPTSLADFNGQRAAREQLQLWIDAARQRKDALDHVLFVGPPGLGKTTLAQIVARELGVN 77

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           F+STSGPVIAKAGDLAA LT L D DVLFIDEIHRL+  VEEILYPAMED+QLDLMVGEG
Sbjct: 78  FKSTSGPVIAKAGDLAATLTQLGDNDVLFIDEIHRLNPAVEEILYPAMEDYQLDLMVGEG 137

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            SARSVK++L +FTLI ATTR GLL+ PL+DRFGIP+RL FY IE+L+ +V R A + G+
Sbjct: 138 ASARSVKLDLPKFTLIGATTRSGLLSTPLRDRFGIPVRLEFYSIEELELVVTRAAGVFGI 197

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T E A E+A R+RGTPRIAGRLLRRVRD A V+ A TI REIAD AL  L +D  G D
Sbjct: 198 GITPEGANEVARRARGTPRIAGRLLRRVRDCAVVSGAATIDREIADRALGMLDVDDRGLD 257

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           +LD RYL ++A  F GGPVGIET++A LSEPRD IED +EPY+IQQGF+QRTPRGR++  
Sbjct: 258 RLDRRYLGIVAEAFAGGPVGIETVAAALSEPRDTIEDTLEPYLIQQGFLQRTPRGRVITA 317

Query: 322 IAWQHLGIDIPHR 334
            AW HLG+  P R
Sbjct: 318 AAWSHLGLAPPAR 330


>gi|149915611|ref|ZP_01904137.1| Holliday junction DNA helicase RuvB [Roseobacter sp. AzwK-3b]
 gi|149810503|gb|EDM70346.1| Holliday junction DNA helicase RuvB [Roseobacter sp. AzwK-3b]
          Length = 342

 Score =  362 bits (930), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 208/332 (62%), Positives = 253/332 (76%), Gaps = 1/332 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M   +  L  +   ED+D   LRP+ L EF GQ EA +NL++FI++A+ R EA+DH LF 
Sbjct: 1   MDSPDPTLRPDPLPEDSD-RSLRPQALSEFIGQAEARANLRIFIQSARQRGEAMDHTLFH 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ+++RELGV FR TSGPV+AKAGDLAA+LTNLE  DVLFIDEIHRL+  
Sbjct: 60  GPPGLGKTTLAQIMSRELGVGFRMTSGPVLAKAGDLAAILTNLERNDVLFIDEIHRLNPA 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDF+LDL++GEGP+AR+V+I L  FTL+ ATTR+GLLT PL+DRFGIP RL
Sbjct: 120 VEEVLYPAMEDFELDLVIGEGPAARTVRIELQPFTLVGATTRLGLLTTPLRDRFGIPTRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  ++L  IV R A L       E A EIA R+RGTPRIAGRLLRRV DFA V     
Sbjct: 180 EFYTEDELHEIVTRNAVLLNAPADTEGAREIARRARGTPRIAGRLLRRVVDFALVEGDGR 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           ITR++AD AL RL +DK+G D  D RYL +IA  + GGPVGIET+SA LSE RDA+E++I
Sbjct: 240 ITRDLADHALTRLGVDKLGLDGADRRYLRLIAEAYQGGPVGIETLSAALSESRDALEEVI 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EP+++QQG IQRTPRGR+L   AW HLG+  P
Sbjct: 300 EPFLLQQGLIQRTPRGRMLAQRAWAHLGMAPP 331


>gi|110799933|ref|YP_696627.1| Holliday junction DNA helicase RuvB [Clostridium perfringens ATCC
           13124]
 gi|168204869|ref|ZP_02630874.1| holliday junction DNA helicase RuvB [Clostridium perfringens E str.
           JGS1987]
 gi|168208648|ref|ZP_02634273.1| holliday junction DNA helicase RuvB [Clostridium perfringens B str.
           ATCC 3626]
 gi|168214132|ref|ZP_02639757.1| holliday junction DNA helicase RuvB [Clostridium perfringens CPE
           str. F4969]
 gi|168215573|ref|ZP_02641198.1| holliday junction DNA helicase RuvB [Clostridium perfringens NCTC
           8239]
 gi|169343509|ref|ZP_02864508.1| holliday junction DNA helicase RuvB [Clostridium perfringens C str.
           JGS1495]
 gi|182624456|ref|ZP_02952240.1| holliday junction DNA helicase RuvB [Clostridium perfringens D str.
           JGS1721]
 gi|123344604|sp|Q0TP13|RUVB_CLOP1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|110674580|gb|ABG83567.1| Holliday junction DNA helicase RuvB [Clostridium perfringens ATCC
           13124]
 gi|169298069|gb|EDS80159.1| holliday junction DNA helicase RuvB [Clostridium perfringens C str.
           JGS1495]
 gi|170663662|gb|EDT16345.1| holliday junction DNA helicase RuvB [Clostridium perfringens E str.
           JGS1987]
 gi|170712997|gb|EDT25179.1| holliday junction DNA helicase RuvB [Clostridium perfringens B str.
           ATCC 3626]
 gi|170714356|gb|EDT26538.1| holliday junction DNA helicase RuvB [Clostridium perfringens CPE
           str. F4969]
 gi|177910459|gb|EDT72836.1| holliday junction DNA helicase RuvB [Clostridium perfringens D str.
           JGS1721]
 gi|182382068|gb|EDT79547.1| holliday junction DNA helicase RuvB [Clostridium perfringens NCTC
           8239]
          Length = 346

 Score =  362 bits (930), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 172/327 (52%), Positives = 233/327 (71%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M    + S  +  +  +   LRP  + E+ GQ +    L +FI+AA+ R EALDHV+  G
Sbjct: 1   MSERLVTSNEIGIDSTNEYSLRPEKINEYIGQDKVKERLNIFIKAAQRREEALDHVILYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+G N + TSGP I +AGDLAA+LT L   DVLFIDEIHRL+  V
Sbjct: 61  PPGLGKTTLANIIANEMGGNLKITSGPAIERAGDLAAILTTLNTNDVLFIDEIHRLNRSV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILYPAMED+ LD+++G+G +++S++++L +FTLI ATTR+G+L++PL+DRFG+   + 
Sbjct: 121 EEILYPAMEDYVLDIIIGKGAASKSIRLDLPKFTLIGATTRIGMLSSPLRDRFGVLCSME 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y  E LK I+ R A++ G  +T+E A EIA RSRGTPRIA RLL+RVRDFAEV +   I
Sbjct: 181 YYTDEQLKEIIIRSAEILGCHITEEGAFEIAKRSRGTPRIANRLLKRVRDFAEVLYDNEI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T E A  +L  L +D  GFD++D + L  I  NF GGPVGIET++  + E  D IED+ E
Sbjct: 241 TEEAAKKSLEILEVDGEGFDRIDNKILEAIIDNFNGGPVGIETLAYFVGEELDTIEDVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLG 328
           PY++Q+GFI RTPRGR+    A++HLG
Sbjct: 301 PYLLQKGFIVRTPRGRMATDKAYKHLG 327


>gi|229814936|ref|ZP_04445274.1| hypothetical protein COLINT_01979 [Collinsella intestinalis DSM
           13280]
 gi|229809423|gb|EEP45187.1| hypothetical protein COLINT_01979 [Collinsella intestinalis DSM
           13280]
          Length = 355

 Score =  362 bits (930), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 171/333 (51%), Positives = 243/333 (72%), Gaps = 1/333 (0%)

Query: 3   DREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           + E  ++  ++ +D D+   LRP+ LE++ GQ     +L++ IEAA++R E+LDHV+F G
Sbjct: 23  ETERFVTGELTSDDLDVERGLRPQRLEDYCGQEHIKQSLRILIEAAQSRGESLDHVIFSG 82

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA VVA E+G   ++TSGP IA+ GDLAA+LTNL+  DVLFIDEIHRL+  V
Sbjct: 83  PPGLGKTTLAAVVANEMGAQIKTTSGPAIARTGDLAAILTNLQPGDVLFIDEIHRLNRQV 142

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILYPAMEDF LD+++G+GP+ARS+++++ RFTL+ ATTR G+LT PL+DRFGI  RL+
Sbjct: 143 EEILYPAMEDFSLDIVIGKGPAARSIRLDIPRFTLVGATTRSGMLTGPLRDRFGISYRLD 202

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y IEDL  IV R + + G+++  E+A EIA RSRGTPR+A RLL+RVRD+A+V    +I
Sbjct: 203 YYGIEDLADIVCRSSSILGVSIDRESAKEIASRSRGTPRLANRLLKRVRDYAQVRGEGSI 262

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
              IA  A+    ID++G D +D+R L  + + F G  VG+ T+++   E  + +ED+ E
Sbjct: 263 ELGIAQEAMRFFEIDELGLDWMDIRILETLCKTFRGRAVGLSTLASATGEDANTLEDVYE 322

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           PY++Q G I RTP+GR+  P A++HLG++   R
Sbjct: 323 PYLLQCGLIVRTPQGRMATPAAFEHLGMEPAAR 355


>gi|126732346|ref|ZP_01748146.1| Holliday junction DNA helicase B [Sagittula stellata E-37]
 gi|126707215|gb|EBA06281.1| Holliday junction DNA helicase B [Sagittula stellata E-37]
          Length = 341

 Score =  362 bits (930), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 206/332 (62%), Positives = 260/332 (78%), Gaps = 1/332 (0%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M+ +  +      ED D   LRP+ L +F GQ EA +NL+VFIE+A++R EA+DH LF G
Sbjct: 1   MEPDPTIRPEPLPEDRD-RALRPQMLADFVGQAEARANLRVFIESARSRGEAMDHTLFHG 59

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLAQ++ARELGV FR TSGPV+AKAGDLAA+LTNLE RDVLFIDEIHR+S  V
Sbjct: 60  PPGLGKTTLAQIMARELGVGFRMTSGPVLAKAGDLAAILTNLEARDVLFIDEIHRMSAAV 119

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMED++LDL++GEGP+AR+V+I L  FTL+ ATTR+GLLT PL+DRFGIP RLN
Sbjct: 120 EEVLYPAMEDYELDLVIGEGPAARTVRIELQPFTLVGATTRLGLLTTPLRDRFGIPTRLN 179

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY +++L+TIV   A+  G+ V    A EIA R+RGTPRIAGRLLRRV DFA V     +
Sbjct: 180 FYTVDELETIVAGNARKLGVRVEGSGAREIARRARGTPRIAGRLLRRVVDFAVVEGGGVV 239

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T+ +AD++L RL +D  G D  D RYL +IA+++GGGPVGIET+SA LSE RDA+E+++E
Sbjct: 240 TQALADSSLTRLGVDARGLDGADRRYLELIAQSYGGGPVGIETLSAALSESRDALEEVVE 299

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           PY++QQG IQRTPRGR+L   AW H+G+  P 
Sbjct: 300 PYLLQQGLIQRTPRGRMLTQSAWTHIGLAPPR 331


>gi|298206841|ref|YP_003715020.1| Holliday junction DNA helicase RuvB [Croceibacter atlanticus
           HTCC2559]
 gi|83849475|gb|EAP87343.1| Holliday junction DNA helicase RuvB [Croceibacter atlanticus
           HTCC2559]
          Length = 340

 Score =  362 bits (930), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 180/329 (54%), Positives = 229/329 (69%), Gaps = 1/329 (0%)

Query: 1   MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M +       + S+E+ DI   LRP +  +F GQ +   NLK+F+EAA  R EALDH LF
Sbjct: 1   MNENLDPSGESFSKEEFDIERALRPLSFSDFAGQDQVLENLKIFVEAANQRNEALDHTLF 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A EL V  + TSGPV+ K GDLA LLTNLE RDVLFIDEIHRLS 
Sbjct: 61  HGPPGLGKTTLAHILANELNVGIKVTSGPVLDKPGDLAGLLTNLEPRDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           ++EE LY AMED+++D+M+  GP+ARSV+INL+ FTLI ATTR GLLT P++ RFGI  R
Sbjct: 121 VIEEYLYSAMEDYKIDIMIETGPNARSVQINLNPFTLIGATTRSGLLTAPMRARFGISSR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y  E L TIV+R + +  + +  EAA EIA RSRGTPRIA  LLRRVRDFA++    
Sbjct: 181 LQYYSTELLSTIVERSSSILNVPIDLEAAIEIAGRSRGTPRIANALLRRVRDFAQIKGNG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I   I+   L  L +D  G D++D R L+ I   F GGPVGI T++  +SE  + IE++
Sbjct: 241 RIDMSISKFGLKALNVDANGLDEMDNRILSTIIEKFKGGPVGITTLATAVSESAETIEEV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
            EP++IQQGFI RTPRGR +   A++HLG
Sbjct: 301 YEPFLIQQGFIMRTPRGREVTEAAYKHLG 329


>gi|300813210|ref|ZP_07093578.1| Holliday junction DNA helicase RuvB [Peptoniphilus sp. oral taxon
           836 str. F0141]
 gi|300512663|gb|EFK39795.1| Holliday junction DNA helicase RuvB [Peptoniphilus sp. oral taxon
           836 str. F0141]
          Length = 334

 Score =  362 bits (930), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 177/330 (53%), Positives = 235/330 (71%), Gaps = 1/330 (0%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD E ++  N S ED     LRP+ L ++ GQ +  + LK+FI+AAK R E LDH L  G
Sbjct: 1   MD-ERIIDANFSVEDKQEINLRPKWLLDYIGQDKVINKLKIFIKAAKNRKEPLDHTLLSG 59

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+GVN + TSGP I + GDLA++LTNL++ DVLFIDEIHRL+  V
Sbjct: 60  PPGLGKTTLAGIIANEMGVNIKVTSGPAIERQGDLASILTNLKEDDVLFIDEIHRLNKSV 119

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILYPAMED+ LD+++G+GPSARS++++L++FTLI ATTR G+LT+PL+DRFG+ + + 
Sbjct: 120 EEILYPAMEDYALDIIIGKGPSARSIRLDLAKFTLIGATTRSGMLTSPLRDRFGVLLNME 179

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
            Y I+ L  IV R A++  + +  E A EIA RSRGTPRIA RLL+RVRD+AEV     I
Sbjct: 180 LYSIDALTKIVIRSAEILNIPIEKEGALEIAKRSRGTPRIANRLLKRVRDYAEVVERGVI 239

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T ++A   L  L IDK G D +D + +  +  NF G PVGI+ ISA + E R  +ED+ E
Sbjct: 240 TEKVAVKGLNLLEIDKYGLDNIDRKIILTMIENFVGRPVGIDAISASIGEDRITVEDVYE 299

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           PY++Q GFI RTPRGRL    A+ H G++ 
Sbjct: 300 PYLMQIGFIVRTPRGRLATKKAYDHFGLEY 329


>gi|172058106|ref|YP_001814566.1| Holliday junction DNA helicase RuvB [Exiguobacterium sibiricum
           255-15]
 gi|229564228|sp|B1YJR1|RUVB_EXIS2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|171990627|gb|ACB61549.1| Holliday junction DNA helicase RuvB [Exiguobacterium sibiricum
           255-15]
          Length = 331

 Score =  362 bits (929), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 182/326 (55%), Positives = 239/326 (73%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
            E +LS +   ED +   LRP+TL+++ GQ +A  NL VFI+AAK R E LDHVL  GPP
Sbjct: 2   EERILSESAHAEDQEEWSLRPQTLDQYIGQEKAKGNLSVFIQAAKIRQETLDHVLLYGPP 61

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++A E+GV  ++T+GP I + GDLAA+L++LE  DVLFIDEIHRLS  +EE
Sbjct: 62  GLGKTTLATIIANEMGVGIKTTAGPAIERPGDLAAILSSLEPGDVLFIDEIHRLSRSIEE 121

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILYPAMED+ LD+++G+G  ARSV+I+L  FTL+ ATTR G+L+ PL+DRFG+ ++L +Y
Sbjct: 122 ILYPAMEDYCLDIVIGQGELARSVRIDLPPFTLVGATTRAGMLSAPLRDRFGVTLKLEYY 181

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            + +L  IV R ++L G      AA  IA+RSRGTPR+A RLLRRVRDFA+VAH   I  
Sbjct: 182 TMPELAAIVTRTSRLFGFEADRMAAEAIALRSRGTPRVANRLLRRVRDFAQVAHQTAIDA 241

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
            +A  AL RL +D +G D +D R L  +A  F GGPVG+ETI+A + E    IED+ EPY
Sbjct: 242 TLATGALDRLHVDALGLDDVDHRLLRSLAERFAGGPVGLETIAATIGEDAQTIEDVYEPY 301

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGI 329
           ++QQGF+QRTPRGR+L P A +HLG+
Sbjct: 302 LLQQGFLQRTPRGRVLTPFARRHLGL 327


>gi|212212079|ref|YP_002303015.1| Holliday junction DNA helicase RuvB [Coxiella burnetii CbuG_Q212]
 gi|226698773|sp|B6IYU2|RUVB_COXB2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|212010489|gb|ACJ17870.1| holliday junction DNA helicase [Coxiella burnetii CbuG_Q212]
          Length = 351

 Score =  362 bits (929), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 182/332 (54%), Positives = 232/332 (69%), Gaps = 1/332 (0%)

Query: 4   REGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
              L+   +   + D+   +RP+ L ++ GQ      + +FI AA  R EALDHVL  GP
Sbjct: 6   ETRLIGATMQSNEPDLERSIRPKRLSDYIGQAAVREQMDIFIRAATNRREALDHVLIFGP 65

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++A E+    + TSGPV+ KAGDLAALLTNLE  DVLFIDEIHRL+  +E
Sbjct: 66  PGLGKTTLAHIIAHEMQAGLKQTSGPVLEKAGDLAALLTNLEPHDVLFIDEIHRLNPAIE 125

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPA+EDFQLD+++GEGPSARS+K++L  FTL+ ATTR GLLT+PL+DRFGI  RL F
Sbjct: 126 EVLYPALEDFQLDIIIGEGPSARSIKLDLPPFTLVGATTRAGLLTSPLRDRFGIVQRLEF 185

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y I DL  IV+R A +  + + +  A EIA RSRGTPRIA RLLRRVRDFAEV     I 
Sbjct: 186 YRIPDLIHIVKRAAHILNVVIDENGAGEIARRSRGTPRIANRLLRRVRDFAEVRANGMIN 245

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             IA  AL  L +D  G D +D + L  I + F GGPVGIE+++A +SE R  IED+IEP
Sbjct: 246 ESIAKEALDLLNVDIRGLDVMDRKLLETIIKKFQGGPVGIESLAAAISEERGTIEDVIEP 305

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           Y+IQ+GFI RTPRGR+   + +QH  + +P +
Sbjct: 306 YLIQEGFILRTPRGRIATELTYQHFKLPLPTQ 337


>gi|158337867|ref|YP_001519043.1| Holliday junction DNA helicase RuvB [Acaryochloris marina
           MBIC11017]
 gi|189045778|sp|B0C2D5|RUVB_ACAM1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|158308108|gb|ABW29725.1| holliday junction DNA helicase RuvB [Acaryochloris marina
           MBIC11017]
          Length = 375

 Score =  362 bits (929), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 168/332 (50%), Positives = 222/332 (66%), Gaps = 3/332 (0%)

Query: 5   EGLLSRNVSQED---ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           + LL     QE+        LRP+  +E+ GQ E    L + I+A K+R EALDH+L  G
Sbjct: 37  DALLQPEAVQEEFVGKQDDKLRPQRFDEYIGQRELKEVLDIAIQATKSRQEALDHLLLYG 96

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTT++ ++A ELGVN + TS P + +  D+  LL NL+ RD+LFIDEIHRLS + 
Sbjct: 97  PPGLGKTTISLILAAELGVNCKVTSAPALERPRDIVGLLVNLQPRDILFIDEIHRLSRMT 156

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMEDF+LD+ +G+G SAR   + L  FTL+ ATTRVG LT+PL+DRFG   RL 
Sbjct: 157 EELLYPAMEDFRLDITIGKGQSARIRSLPLKPFTLVGATTRVGALTSPLRDRFGFVQRLR 216

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FYE ++L  IV R A +    +T +AA E+A RSRGTPRIA RLL+RVRD+AEV H+  I
Sbjct: 217 FYEADELGQIVLRTADILKAKITSDAAEEVARRSRGTPRIANRLLKRVRDYAEVKHSGEI 276

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T+ IA  AL    +D  G D  D R LT++   + GGPVG++T++A   E    IE++ E
Sbjct: 277 TQTIAQEALELFNVDPCGLDWTDRRLLTVMIEQYNGGPVGVDTLAAATGEDSQTIEEVYE 336

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           PY++Q G++ RTPRGR+  P AW HLG   P 
Sbjct: 337 PYLMQIGYLNRTPRGRVATPAAWTHLGYQPPD 368


>gi|282880544|ref|ZP_06289251.1| Holliday junction DNA helicase RuvB [Prevotella timonensis CRIS
           5C-B1]
 gi|281305647|gb|EFA97700.1| Holliday junction DNA helicase RuvB [Prevotella timonensis CRIS
           5C-B1]
          Length = 344

 Score =  362 bits (929), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 172/332 (51%), Positives = 228/332 (68%), Gaps = 2/332 (0%)

Query: 2   MDREGLLSRN--VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M+ +  +      S E    + LRP    +F+GQ +   NL++F+EAAK R E LDH L 
Sbjct: 1   MEEDFNIREERLSSAEKEFENALRPLKFNDFSGQPKVVENLEIFVEAAKYRGEPLDHTLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTL+ ++A ELGV F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS 
Sbjct: 61  HGPPGLGKTTLSNIIANELGVGFKLTSGPVLDKPGDLAGILTSLEPNDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE LY AMED+++D+M+ +GPSARS++I+L+ FTL+ ATTR GLLT PL+ RFGI + 
Sbjct: 121 VVEEYLYSAMEDYRIDIMIDKGPSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGINMH 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +YE   L  I+ R A +  + + +EAA EIA RSRGTPRIA  LLRRVRDFA+V    
Sbjct: 181 LEYYEPPTLVRIITRSATILKVPIDEEAAYEIARRSRGTPRIANALLRRVRDFAQVKGNG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I   IA  AL  L ID+ G D++D + L  I   F GGPVG+ TI+  + E    +E++
Sbjct: 241 GINTAIAKYALQALNIDQYGLDEIDNKILLTIIDKFRGGPVGLSTIATAIGEDTGTVEEV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
            EP++I +GFI+RTPRGR+   +A++HLG D 
Sbjct: 301 YEPFLIMEGFIKRTPRGRMATHLAYEHLGRDP 332


>gi|219871187|ref|YP_002475562.1| holliday junction DNA helicase B [Haemophilus parasuis SH0165]
 gi|219691391|gb|ACL32614.1| holliday junction DNA helicase B [Haemophilus parasuis SH0165]
          Length = 308

 Score =  362 bits (929), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 178/303 (58%), Positives = 230/303 (75%)

Query: 27  LEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTS 86
           L ++ GQ      +++FI+AAK R +ALDH+L  GPPGLGKTTLA ++A E+GVN R+TS
Sbjct: 2   LADYVGQPSVREQMEIFIKAAKLRNDALDHLLIFGPPGLGKTTLANIIANEMGVNIRTTS 61

Query: 87  GPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARS 146
           GPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS  +EE+LYPAMED+QLD+M+GEGP+ARS
Sbjct: 62  GPVLEKAGDLAAILTNLEPYDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARS 121

Query: 147 VKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDE 206
           +K++L  FTL+ ATTR G LT+PL+DRFGI  RL FY +EDL +IV R A    L +  +
Sbjct: 122 IKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVSRSAGCLNLNLATD 181

Query: 207 AACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLR 266
           AA EIA RSRGTPRIA RLLRRVRDFA+V +   I+ +IA  AL  L +D  GFD +D +
Sbjct: 182 AAYEIARRSRGTPRIANRLLRRVRDFADVRNNGIISSDIAKQALTMLDVDSEGFDFMDRK 241

Query: 267 YLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQH 326
            L+ +   F GGPVG++ ++A + E R+ IED++EPY+IQQGF+QRTPRGR+     + H
Sbjct: 242 LLSAVIERFDGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRIATSRTYSH 301

Query: 327 LGI 329
           LG+
Sbjct: 302 LGL 304


>gi|305665240|ref|YP_003861527.1| Holliday junction DNA helicase RuvB [Maribacter sp. HTCC2170]
 gi|88709993|gb|EAR02225.1| Holliday junction DNA helicase RuvB [Maribacter sp. HTCC2170]
          Length = 340

 Score =  362 bits (929), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 186/329 (56%), Positives = 237/329 (72%), Gaps = 1/329 (0%)

Query: 1   MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M +     S N++ E+ DI   LRP T ++FTGQ +   NLKVF+EAA  R EALDH LF
Sbjct: 1   MNEHLDPASENLTPEEIDIERALRPITFDDFTGQEQVLENLKVFVEAANQRDEALDHTLF 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A ELGV  + TSGPV+ K GDLA LLTNL++RDVLFIDEIHRLS 
Sbjct: 61  HGPPGLGKTTLAHILANELGVGIKITSGPVLDKPGDLAGLLTNLQERDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           IVEE LY AMED+++D+M+  GP+ARSV+INL+ FTLI ATTR GLLT P++ RFGI  R
Sbjct: 121 IVEEYLYSAMEDYKIDIMIETGPNARSVQINLNPFTLIGATTRSGLLTAPMRARFGIQSR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y  E L TIV+R A++  + +  +AA EIA RSRGTPRI   LLRRVRDFA++    
Sbjct: 181 LQYYSTELLSTIVERSAEILKVPIAIDAAIEIAGRSRGTPRICNSLLRRVRDFAQIKGNG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  EI+  +L  L +D  G D++D + LT I   F GGPVGI T++  +SE  + IE++
Sbjct: 241 NIDMEISKYSLKALNVDAHGLDEMDNKILTTIIDKFKGGPVGITTLATAVSESAETIEEV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
            EP++IQQGFI RTPRGR +  +A++HLG
Sbjct: 301 YEPFLIQQGFIMRTPRGREVTELAYKHLG 329


>gi|315606858|ref|ZP_07881867.1| crossover junction ATP-dependent DNA helicase RuvB [Prevotella
           buccae ATCC 33574]
 gi|315251523|gb|EFU31503.1| crossover junction ATP-dependent DNA helicase RuvB [Prevotella
           buccae ATCC 33574]
          Length = 345

 Score =  362 bits (929), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 173/329 (52%), Positives = 229/329 (69%), Gaps = 1/329 (0%)

Query: 1   MMDREGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M D   +    +S  E    + LRP   ++F GQ +   NL++F+EAAK R E LDH L 
Sbjct: 1   MNDDFDIRQETLSSAEKEFENALRPVHFQDFNGQQKVVENLEIFVEAAKFRGEPLDHTLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTL+ ++A ELGV F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS 
Sbjct: 61  YGPPGLGKTTLSNIIANELGVGFKITSGPVLDKPGDLAGILTSLEPNDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE LY AMED+++D+M+ +GPSARS++I+L+ FTL+ ATTR G+LT PL+ RFGI + 
Sbjct: 121 VVEEYLYSAMEDYRIDIMIDKGPSARSIQIDLNPFTLVGATTRSGMLTAPLRARFGINMH 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y  E L  I++R A L  + + DEAA EI+ RSRGTPRIA  LLRRVRDFA+V    
Sbjct: 181 LEYYAPETLMRIIKRSAYLLRVPIDDEAAIEISRRSRGTPRIANSLLRRVRDFAQVKGNG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           TI   IA  AL  L ID+ G D++D + L  I   F GGPVG+ TI+  + E    +E++
Sbjct: 241 TIDTVIAKMALQALNIDQYGLDEIDNKILLTIIDKFRGGPVGVSTIATAIGEDSGTVEEV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
            EP++I +GFI+RTPRGR+   +A++HLG
Sbjct: 301 YEPFLIMEGFIKRTPRGRMATRLAYEHLG 329


>gi|28211816|ref|NP_782760.1| Holliday junction DNA helicase RuvB [Clostridium tetani E88]
 gi|44888476|sp|Q891Z8|RUVB_CLOTE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|28204258|gb|AAO36697.1| holliday junction DNA helicase ruvB [Clostridium tetani E88]
          Length = 345

 Score =  362 bits (929), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 173/328 (52%), Positives = 232/328 (70%), Gaps = 1/328 (0%)

Query: 5   EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
              ++    +ED DI   LRP  LEE+ GQ +    L++FI+AAK R E+LDHVL  GPP
Sbjct: 6   NRFVTPLSIEEDIDIEYNLRPTQLEEYIGQSKVREKLRIFIKAAKNRGESLDHVLLYGPP 65

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++A+E+  N + TSGP I +AGDLAA+LT L + DVLFIDEIHRL+  VEE
Sbjct: 66  GLGKTTLANIIAKEMKGNLKITSGPAIERAGDLAAILTTLNEHDVLFIDEIHRLNRAVEE 125

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILYPAMED+ LD+++G+G +A+S++++L  FTLI ATTRVGLLT PL+DRFG+   + FY
Sbjct: 126 ILYPAMEDYALDIVIGKGAAAKSIRLDLPHFTLIGATTRVGLLTAPLRDRFGVLCPMEFY 185

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
             E+LK I+ R +K+  +   +EAA E+A RSRGTPRIA R+L+RVRD++EV     I  
Sbjct: 186 NEEELKDIIVRSSKILNVKTEEEAAYELARRSRGTPRIANRILKRVRDYSEVMGDGIIDL 245

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
            + + AL  L IDK GFD +D + L  I  NF GGPVG+ET++  + E  D IED+ EPY
Sbjct: 246 NMTNKALNLLEIDKEGFDSIDTKILKAILDNFNGGPVGLETLAYFIGEELDTIEDVYEPY 305

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           ++Q+GFI RTPRGR+     ++H   +I
Sbjct: 306 LLQKGFIMRTPRGRVATEKTYKHFKREI 333


>gi|254282411|ref|ZP_04957379.1| Holliday junction DNA helicase RuvB [gamma proteobacterium NOR51-B]
 gi|219678614|gb|EED34963.1| Holliday junction DNA helicase RuvB [gamma proteobacterium NOR51-B]
          Length = 352

 Score =  362 bits (928), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 185/335 (55%), Positives = 248/335 (74%), Gaps = 2/335 (0%)

Query: 1   MMDREGLLSRNV--SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M++ + L++ N   S E+A    +RP+TL ++ GQ      +++F+ AAK R E LDH L
Sbjct: 1   MIETDRLIAANPEGSNEEAVDRAIRPKTLADYLGQRVVREQMEIFLSAAKGRGEPLDHTL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA ++A E+GV+ ++TSGPV+ KAGD+AAL+TNLE  DVLFIDEIHRLS
Sbjct: 61  IFGPPGLGKTTLASIIAHEMGVSLKTTSGPVLEKAGDIAALMTNLEPGDVLFIDEIHRLS 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
             VEE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ ATTR GLLT+PL+DRFGI  
Sbjct: 121 PYVEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGLLTSPLRDRFGIVQ 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           RL FYE++DL  IV R   +  +++ ++ A EIA R+RGTPRIA RLLRRVRD+AEV   
Sbjct: 181 RLEFYEVDDLTRIVLRSGTILSISLDEQGAREIARRARGTPRIANRLLRRVRDYAEVKAD 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             IT ++A  AL  L +D++G D LD R L M+   F GGPVGI++++A LSE R  +ED
Sbjct: 241 GAITADVAARALDMLNVDQLGLDHLDRRLLLMLIEKFDGGPVGIDSLAAALSEERGTLED 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           ++EPY+IQQG+I RTPRGR++   A+ H G+  P 
Sbjct: 301 VLEPYLIQQGYIIRTPRGRMVTRNAYAHFGLRPPE 335


>gi|319651694|ref|ZP_08005821.1| Holliday junction DNA helicase B [Bacillus sp. 2_A_57_CT2]
 gi|317396761|gb|EFV77472.1| Holliday junction DNA helicase B [Bacillus sp. 2_A_57_CT2]
          Length = 333

 Score =  362 bits (928), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 171/331 (51%), Positives = 233/331 (70%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M+   +      Q+ +    LRP+TL+++ GQ +   NL++FI+AA+ R E LDHVL  G
Sbjct: 1   MEERIISGEADLQDLSFEQSLRPQTLKQYIGQDKVKQNLEIFIKAARIREETLDHVLLYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+GVN R+T+GP I + GDLAA+LT LE  DVLFIDEIHRL   +
Sbjct: 61  PPGLGKTTLAAIIANEMGVNIRTTAGPAIERPGDLAAILTALEPGDVLFIDEIHRLPRSI 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTR G L+ PL+DRFG+  RL 
Sbjct: 121 EEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGSLSAPLRDRFGVLSRLE 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y  E L  IV R A++    +  +AA E+A RSRGTPRIA RLLRRVRDFA+V     +
Sbjct: 181 YYSEEQLTDIVVRTAEVLDTGIDLKAANEVARRSRGTPRIANRLLRRVRDFAQVKSDGQV 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
              +A  AL  L +D++G D +D + L  I   F GGPVG+ETI+A + E    IED+ E
Sbjct: 241 EETLAKEALELLQVDRLGLDHIDHKLLRGIIEKFRGGPVGLETIAATIGEEAHTIEDVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           PY++Q GF+QRTPRGR++  + ++H  +++P
Sbjct: 301 PYLLQIGFLQRTPRGRIVTDLVYRHFQMEVP 331


>gi|255994148|ref|ZP_05427283.1| holliday junction DNA helicase RuvB [Eubacterium saphenum ATCC
           49989]
 gi|255993816|gb|EEU03905.1| holliday junction DNA helicase RuvB [Eubacterium saphenum ATCC
           49989]
          Length = 332

 Score =  362 bits (928), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 174/329 (52%), Positives = 237/329 (72%), Gaps = 1/329 (0%)

Query: 4   REGLLSRNVSQEDAD-ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
            + +  + +  ED      LRP++L+++ GQ +   NL+VFI+AAK R+E+LDHVLF GP
Sbjct: 2   EDRITEKEMLAEDVLSDQNLRPKSLKDYIGQKDVIDNLEVFIKAAKKRSESLDHVLFFGP 61

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
            GLGKTTL+ ++A EL  + + TSGP I KAGDLAA+LTNL + DVLFIDEIHRL+  VE
Sbjct: 62  AGLGKTTLSCIIANELSADIKITSGPTIEKAGDLAAILTNLTENDVLFIDEIHRLNRTVE 121

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LY AMED+ +D+++G+GPSARS+++++ +FTL+ ATTR G LT PL+DRFGI  + N 
Sbjct: 122 EVLYSAMEDYAIDIIIGKGPSARSIRLDIPKFTLVGATTRAGNLTAPLRDRFGIVSKFNL 181

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  ++LK IV R A + G+ + D+AA EIA RSRGTPRIA R+L+RVRDF+EV+    + 
Sbjct: 182 YSNDELKQIVNRSAGILGIKINDKAASEIAKRSRGTPRIANRILKRVRDFSEVSGKDEVD 241

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
              A  AL  L ID  G +  D R L+ I   F GGPVGI+TI+A + E R  IED+ EP
Sbjct: 242 INDATKALDALGIDSAGLEDTDRRILSFIIDRFTGGPVGIDTIAASIGEERITIEDVYEP 301

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           Y++Q+GFI RTP+GR+    A++HLGI+I
Sbjct: 302 YLLQEGFIHRTPKGRVASEKAYEHLGINI 330


>gi|86135095|ref|ZP_01053677.1| Holliday junction ATP-dependent DNA helicase RuvB [Polaribacter sp.
           MED152]
 gi|85821958|gb|EAQ43105.1| Holliday junction ATP-dependent DNA helicase RuvB [Polaribacter sp.
           MED152]
          Length = 340

 Score =  362 bits (928), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 186/331 (56%), Positives = 237/331 (71%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M +     + + S E+ D+   LRP + ++FTGQ +A  NLK+F+EAA  R EALDH LF
Sbjct: 1   MNENLNPENSHYSNEELDVEKKLRPLSFDDFTGQDQALENLKIFVEAANQRGEALDHALF 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A EL V  + TSGPV+ K GDLA LLTNL++RDVLFIDEIHRLS 
Sbjct: 61  HGPPGLGKTTLAHILANELQVGIKVTSGPVLDKPGDLAGLLTNLDERDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           IVEE LY AMED+++D+M+  GP+AR+V+INL  FTLI ATTR GLLT P++ RFGI  R
Sbjct: 121 IVEEYLYSAMEDYKIDIMIESGPNARTVQINLEPFTLIGATTRSGLLTAPMRARFGISSR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L++Y  E L TI+QR A +  + ++ EAA EIA RSRGTPRIA  LLRRVRDFA++    
Sbjct: 181 LHYYSTELLTTIIQRSASILQVPISMEAAVEIAGRSRGTPRIANALLRRVRDFAQIKGDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT EIA  AL  L +D  G D++D + L  I   F GGPVGI TI+  +SE  + IE++
Sbjct: 241 KITIEIAKYALKALHVDAHGLDEMDNKILATIIDKFKGGPVGISTIATAVSENTETIEEV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
            EP++IQQGFI RTPRGR +  +A++HLG  
Sbjct: 301 YEPFLIQQGFIMRTPRGREVTELAYKHLGRT 331


>gi|282878862|ref|ZP_06287629.1| Holliday junction DNA helicase RuvB [Prevotella buccalis ATCC
           35310]
 gi|281299070|gb|EFA91472.1| Holliday junction DNA helicase RuvB [Prevotella buccalis ATCC
           35310]
          Length = 344

 Score =  362 bits (928), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 171/331 (51%), Positives = 231/331 (69%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M +   +    +S  E    + LRP    +F+GQ +   NL++F+EAAK R E LDH L 
Sbjct: 1   MEEDFDIRDERISSAEKEFENALRPLKFNDFSGQPKVVENLQIFVEAAKYRGEPLDHTLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTL+ ++A ELGV F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS 
Sbjct: 61  HGPPGLGKTTLSNIIANELGVGFKLTSGPVLDKPGDLAGILTSLEPNDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE LY AMED+++D+M+ +GPSARS++I+L+ FTL+ ATTR GLLT PL+ RFGI + 
Sbjct: 121 VVEEYLYSAMEDYRIDIMIDKGPSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGINMH 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y  E L+ I++R A +  + + ++AA EIA RSRGTPRIA  LLRRVRDFA+V    
Sbjct: 181 LEYYAPETLQKIIRRSANILNVPIDEDAAYEIARRSRGTPRIANALLRRVRDFAQVKGNG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           +I   IA  AL  L ID+ G D++D + L  I   F GGPVG+ TI+  + E    +E++
Sbjct: 241 SINTRIAQFALQALNIDQYGLDEIDNKILLTIIDKFRGGPVGLSTIATAIGEDTGTVEEV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
            EP++I +GFI+RTPRGR+   +A++HLG D
Sbjct: 301 YEPFLIMEGFIKRTPRGRMATHLAYEHLGRD 331


>gi|255020125|ref|ZP_05292195.1| Holliday junction DNA helicase RuvB [Acidithiobacillus caldus ATCC
           51756]
 gi|254970418|gb|EET27910.1| Holliday junction DNA helicase RuvB [Acidithiobacillus caldus ATCC
           51756]
          Length = 345

 Score =  362 bits (928), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 177/332 (53%), Positives = 232/332 (69%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M   G LS      D     LRPR L+E+ GQ     +L +FI+AA+ R EALDHVL  G
Sbjct: 1   MVERGPLSLEEDGSDKLDRALRPRHLQEYLGQARLRDSLALFIDAARGRGEALDHVLLFG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A+E+G   + TSGP++ K GDLAA+LTNL+  DVLF+DEIHRLS +V
Sbjct: 61  PPGLGKTTLAHIIAQEMGAGLKVTSGPILDKPGDLAAILTNLQPFDVLFVDEIHRLSPVV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILYPA+ED++LD+++GEGPSARS+KI L  FTLI ATTR GLLT+PL+DRFGI   L 
Sbjct: 121 EEILYPALEDYELDILIGEGPSARSIKIALPPFTLIGATTRAGLLTSPLRDRFGISFHLE 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY +++L  IV R A++         A EIA RSRGTPRIA RLLRRVRD+A+V    TI
Sbjct: 181 FYSVDELAQIVSRSARILQTPFDAAGAREIARRSRGTPRIANRLLRRVRDYAQVRGNGTI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
               A AAL  + +D+ GFD  D + L  + + FGGGPVG+E+++A + E R  IE+++E
Sbjct: 241 DEATAQAALRLMEVDEYGFDGQDRKLLQAVIQRFGGGPVGVESLAAAIGEERGTIEEVLE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           P++IQ+G++ RTPRGR     ++  LG+  P 
Sbjct: 301 PFLIQRGYLVRTPRGRCATQQSYLALGLPCPD 332


>gi|308234390|ref|ZP_07665127.1| Holliday junction DNA helicase RuvB [Atopobium vaginae DSM 15829]
 gi|328944206|ref|ZP_08241670.1| crossover junction ATP-dependent DNA helicase RuvB [Atopobium
           vaginae DSM 15829]
 gi|327491125|gb|EGF22900.1| crossover junction ATP-dependent DNA helicase RuvB [Atopobium
           vaginae DSM 15829]
          Length = 368

 Score =  362 bits (928), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 167/328 (50%), Positives = 238/328 (72%), Gaps = 1/328 (0%)

Query: 6   GLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
             ++  ++++D D+   LRP +L ++ GQ     NL+V I AAK R E LDHVLF GPPG
Sbjct: 39  RSVACELTEDDLDVERSLRPESLGDYCGQTRVRENLRVLISAAKDRGETLDHVLFSGPPG 98

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLA +VA E+G + ++TSGP IA+ GDLAA+LTNL++ DVLF+DEIHRL+  VEE+
Sbjct: 99  LGKTTLASIVAHEMGAHLKTTSGPAIARTGDLAAILTNLQEGDVLFVDEIHRLNHQVEEV 158

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPAMEDF LD+++G+GP+ARS+++++  FTLI ATTR GLLT PL+DRFGI  RL++Y 
Sbjct: 159 LYPAMEDFFLDIVIGKGPAARSIRLDVPHFTLIGATTRTGLLTGPLRDRFGISYRLDYYS 218

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +++L  IV+R A +  + + D  A EIA RSRGTPR+A RLL+RVRD+A+V     I+ +
Sbjct: 219 VDELAEIVKRSAGILEVGIDDSGAQEIASRSRGTPRLANRLLKRVRDYAQVKAHGEISWD 278

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +A  AL    ID+MG D +D + L+++ + FGG  VG+ TI++ + E    +ED+ EPY+
Sbjct: 279 VASQALSFFEIDEMGLDWMDKKILSVLTQTFGGRAVGLTTIASAVGEDPATLEDVYEPYL 338

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           +Q+G + RTP+GR    +A+ HLG+  P
Sbjct: 339 LQRGLLIRTPQGRQATSLAFTHLGLHAP 366


>gi|288925421|ref|ZP_06419355.1| holliday junction DNA helicase RuvB [Prevotella buccae D17]
 gi|288337892|gb|EFC76244.1| holliday junction DNA helicase RuvB [Prevotella buccae D17]
          Length = 345

 Score =  362 bits (928), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 173/329 (52%), Positives = 229/329 (69%), Gaps = 1/329 (0%)

Query: 1   MMDREGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M D   +    +S  E    + LRP   ++F GQ +   NL++F+EAAK R E LDH L 
Sbjct: 1   MNDDFDIRQETLSSAEKEFENALRPVHFQDFNGQQKVVENLEIFVEAAKFRGEPLDHTLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTL+ ++A ELGV F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS 
Sbjct: 61  YGPPGLGKTTLSNIIANELGVGFKITSGPVLDKPGDLAGILTSLEPNDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE LY AMED+++D+M+ +GPSARS++I+L+ FTL+ ATTR G+LT PL+ RFGI + 
Sbjct: 121 VVEEYLYSAMEDYRIDIMIDKGPSARSIQIDLNPFTLVGATTRSGMLTAPLRARFGINMH 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y  E L  I++R A L  + + DEAA EI+ RSRGTPRIA  LLRRVRDFA+V    
Sbjct: 181 LEYYAPEILMRIIKRSAYLLRVPIDDEAAIEISRRSRGTPRIANSLLRRVRDFAQVKGNG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           TI   IA  AL  L ID+ G D++D + L  I   F GGPVG+ TI+  + E    +E++
Sbjct: 241 TIDTVIAKMALQALNIDQYGLDEIDNKILLTIIDKFRGGPVGVSTIATAIGEDSGTVEEV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
            EP++I +GFI+RTPRGR+   +A++HLG
Sbjct: 301 YEPFLIMEGFIKRTPRGRMATRLAYEHLG 329


>gi|149203739|ref|ZP_01880708.1| Holliday junction DNA helicase B [Roseovarius sp. TM1035]
 gi|149142856|gb|EDM30898.1| Holliday junction DNA helicase B [Roseovarius sp. TM1035]
          Length = 342

 Score =  362 bits (928), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 207/332 (62%), Positives = 253/332 (76%), Gaps = 1/332 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M + +  L      ED D   LRP+ L EF GQ EA +NL VFI++A+ R +A+DH LF 
Sbjct: 1   MTEPDPTLRGAALPEDQD-RSLRPQALSEFIGQREARANLAVFIQSARQRGDAMDHTLFH 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++ARELGV FR TSGPV+AKAGDLAA+LTNLE  DVLFIDEIHRL+  
Sbjct: 60  GPPGLGKTTLAQIMARELGVGFRMTSGPVLAKAGDLAAILTNLERNDVLFIDEIHRLNPA 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDF+LDL++GEGP+AR+V+I L  FTL+ ATTR+GLLT PL+DRFGIP RL
Sbjct: 120 VEEVLYPAMEDFELDLVIGEGPAARTVRIELQPFTLVGATTRLGLLTTPLRDRFGIPTRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FYEI++L  IV R AKL  +    + A EIA R+RGTPRIAGRLLRRV DFA V     
Sbjct: 180 QFYEIDELHEIVTRNAKLLNIPTDPDGAREIARRARGTPRIAGRLLRRVVDFAVVEGGGK 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I+R +AD++L RL +D +G D  D RYL +IA  + GGPVGIET+SA LSE RDA+E++I
Sbjct: 240 ISRALADSSLTRLGVDHLGLDGADRRYLRLIAEAYQGGPVGIETLSAALSESRDALEEVI 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EP+++QQG IQRTPRGR+L    W HLG+  P
Sbjct: 300 EPFLLQQGLIQRTPRGRMLAQGGWAHLGLAAP 331


>gi|229825021|ref|ZP_04451090.1| hypothetical protein GCWU000182_00371 [Abiotrophia defectiva ATCC
           49176]
 gi|229790768|gb|EEP26882.1| hypothetical protein GCWU000182_00371 [Abiotrophia defectiva ATCC
           49176]
          Length = 333

 Score =  362 bits (928), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 172/327 (52%), Positives = 240/327 (73%), Gaps = 1/327 (0%)

Query: 4   REGLLSRNVSQEDA-DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           +  ++S   S+ED  +   LRP+ L ++ GQ +A   +KV+IEAAK R E LDHVL  GP
Sbjct: 6   KRRIISTIASEEDIRNDDTLRPKFLTDYIGQKKAKEMMKVYIEAAKGRKEPLDHVLLYGP 65

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++A E+GV+ + TSGP I K GD+AA+L NL++ DVLF+DEIHRL+  VE
Sbjct: 66  PGLGKTTLAGIIANEMGVHIKITSGPAIEKPGDVAAILNNLKEGDVLFVDEIHRLNRQVE 125

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMEDF +D+++G+G +++S+++ L +FTLI ATTR G+L+ PL+DRFG+  RL +
Sbjct: 126 EVLYPAMEDFAIDVVIGKGATSKSIRLELPKFTLIGATTRAGMLSAPLRDRFGVVNRLEY 185

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y + +L+TI+ R AK+ G+ + +EAA E+A RSRGTPR+A RLL+RVRDFAEV +   +T
Sbjct: 186 YNLTELETIIMRSAKVLGVKIENEAALEMAKRSRGTPRLANRLLKRVRDFAEVKYDGKLT 245

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           +E+A   L  L ID  G D +D + LT +   FGGGPVG+ETI+  + E    IED+ EP
Sbjct: 246 KEVAAEVLTLLNIDNYGLDHIDRQILTTMIEKFGGGPVGLETIAVSIGEDTATIEDVYEP 305

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           Y+IQ GFI RT RGR++  +A+ HLG+
Sbjct: 306 YLIQSGFIARTQRGRIVTDLAYTHLGL 332


>gi|325832021|ref|ZP_08165118.1| Holliday junction DNA helicase RuvB [Eggerthella sp. HGA1]
 gi|325486342|gb|EGC88794.1| Holliday junction DNA helicase RuvB [Eggerthella sp. HGA1]
          Length = 363

 Score =  362 bits (928), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 175/330 (53%), Positives = 243/330 (73%), Gaps = 1/330 (0%)

Query: 4   REGLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           R   ++  ++++D A    LRP+ L ++ GQ +   +L + IEAA+AR + +DH+LF GP
Sbjct: 31  RSRAVAPTLTEDDLALDRSLRPKRLGDYLGQTKIKESLAILIEAAQARGDVVDHILFSGP 90

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA VVA ELG N ++TSGP I + GDLAA+LTNLE+ DVLFIDEIHRL+ +VE
Sbjct: 91  PGLGKTTLATVVANELGANIKTTSGPAIERTGDLAAILTNLEEGDVLFIDEIHRLNRMVE 150

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPA+EDF LD++VG+GP+ARS++++L RFTL+ ATTR GLLT PL+DRFGI  RL +
Sbjct: 151 EVLYPALEDFALDIVVGKGPAARSIRLDLPRFTLVGATTRTGLLTGPLRDRFGIVFRLQY 210

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  E+L +IV+R A +  +A+ ++ A EIA RSRGTPR+A RLL+RVRD+A+V     I 
Sbjct: 211 YSPEELASIVRRSASILDVAIEEDGALEIARRSRGTPRLANRLLKRVRDWAQVRGDGIID 270

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            ++A  AL    +D +G D +D R L ++A  FGG PVG+ T+++ LSE  D +ED+ EP
Sbjct: 271 EDVAAQALSFFEVDALGLDMMDNRILELLAVQFGGRPVGLTTLASALSEDTDTLEDVYEP 330

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           Y++QQG + RTP+GR+    A+ HLGI +P
Sbjct: 331 YLMQQGLLVRTPKGRICTERAYDHLGIPVP 360


>gi|89889466|ref|ZP_01200977.1| holliday junction specific DNA helicase, subunit ruvB
           [Flavobacteria bacterium BBFL7]
 gi|89517739|gb|EAS20395.1| holliday junction specific DNA helicase, subunit ruvB
           [Flavobacteria bacterium BBFL7]
          Length = 342

 Score =  361 bits (927), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 177/316 (56%), Positives = 229/316 (72%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
            +E+     LRP + ++F GQ +   NLK+F+EAA  R +ALDH LF GPPGLGKTTLA 
Sbjct: 14  HEENDMERALRPLSFDDFAGQDQVLENLKIFVEAANQRDDALDHALFHGPPGLGKTTLAH 73

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++A ELGV  + TSGPV+ K GDLA LLTNL++RDVLFIDEIHRLS IVEE LY AMED+
Sbjct: 74  ILANELGVGIKVTSGPVLDKPGDLAGLLTNLDERDVLFIDEIHRLSPIVEEYLYSAMEDY 133

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           ++D+M+  GP+AR+V+INL+ FTLI ATTR GLLT P++ RFGI  RL +Y  E L TIV
Sbjct: 134 KIDIMIETGPNARTVQINLAPFTLIGATTRSGLLTAPMRARFGIQSRLQYYSTELLSTIV 193

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R A +  + + ++AA EIA RSRGTPRIA  LLRRVRDFA++    +I  +IA  +L  
Sbjct: 194 TRSADILKVPIDEDAAIEIAGRSRGTPRIANALLRRVRDFAQIKGNGSIDLKIAKYSLKA 253

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D  G D++D + L  I   F GGPVG+ TI+  +SE  + IE++ EP++IQQGFI R
Sbjct: 254 LNVDVNGLDEMDNKILLTIIDKFKGGPVGLTTIATAVSESAETIEEVYEPFLIQQGFIMR 313

Query: 313 TPRGRLLMPIAWQHLG 328
           TPRGR +  +A+QHLG
Sbjct: 314 TPRGREVTELAYQHLG 329


>gi|241895533|ref|ZP_04782829.1| Holliday junction DNA helicase B [Weissella paramesenteroides ATCC
           33313]
 gi|241871111|gb|EER74862.1| Holliday junction DNA helicase B [Weissella paramesenteroides ATCC
           33313]
          Length = 336

 Score =  361 bits (927), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 170/320 (53%), Positives = 221/320 (69%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E +    LRP TL+++ GQ +    L V+IEAAK R+E LDH+L  GPPGLGKTTLA VV
Sbjct: 15  EQSIEQTLRPSTLQQYIGQEDLKQRLHVYIEAAKQRSEPLDHILLYGPPGLGKTTLAMVV 74

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A E+GV  R+TSGP I K+GDL ALL  L   DVLFIDEIHRL   VEE+LY AMEDF +
Sbjct: 75  AHEMGVGLRTTSGPAIEKSGDLLALLNELAPGDVLFIDEIHRLPKQVEEMLYSAMEDFYV 134

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D++ GEGP+A  +   L  FTL+ ATTR G+L+ PL+DRFGI   + +Y   +L  I+QR
Sbjct: 135 DIIAGEGPTAHPIHFPLPPFTLVGATTRAGMLSQPLRDRFGIVEHMAYYTPGELSKIIQR 194

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A +  + V DE A E+A RSRGTPRIA RLLRRVRDF  V   KTIT E+ + +L  L 
Sbjct: 195 SADIFNIEVADEGAYELARRSRGTPRIANRLLRRVRDFTTVKGLKTITDEMVNFSLALLQ 254

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           ID MG D++D + L  + + + GGPVG+ TI+A + E  D IE + EPY++Q GF+QRTP
Sbjct: 255 IDGMGLDEVDHKILETMIKFYQGGPVGVGTIAANIGEEVDTIESVYEPYLLQIGFLQRTP 314

Query: 315 RGRLLMPIAWQHLGIDIPHR 334
           RGR++   A++HL + +P +
Sbjct: 315 RGRVVTLAAYEHLHLPLPDK 334


>gi|329848092|ref|ZP_08263120.1| holliday junction DNA helicase RuvB [Asticcacaulis biprosthecum
           C19]
 gi|328843155|gb|EGF92724.1| holliday junction DNA helicase RuvB [Asticcacaulis biprosthecum
           C19]
          Length = 344

 Score =  361 bits (927), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 198/324 (61%), Positives = 248/324 (76%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           S N  +E A    LRP+T ++F GQ    +NLKVF++AA  R EALDHVLF GPPGLGKT
Sbjct: 9   SDNDYEEKAQDRALRPQTFDDFVGQAPLKANLKVFVDAAAQRREALDHVLFYGPPGLGKT 68

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           TLAQ+VARELGV FR+TSGPV+AKAGDLAA+L+NLE  DVLFIDEIHRLS  VEEILYPA
Sbjct: 69  TLAQIVARELGVGFRATSGPVLAKAGDLAAILSNLEPNDVLFIDEIHRLSPAVEEILYPA 128

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           MED+ LDL++G+GP+AR+V+I+L+ FTL+ ATTR GLL+ PL+DRFGIP+RL FY  E+L
Sbjct: 129 MEDYVLDLIIGDGPAARTVRIDLAPFTLVGATTRAGLLSTPLRDRFGIPLRLEFYTPEEL 188

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             +V    +  G  ++++ A EIA RSRGTPR+AGRLLRRVRDFA       I ++ A  
Sbjct: 189 VRVVMGTGRKMGAPLSEDGALEIASRSRGTPRVAGRLLRRVRDFATSDGVALIDKKAASK 248

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL RL +D +G D  D RYL  +  N+GGGPVG+ET+SA ++E RDA+ED+IEPY++QQG
Sbjct: 249 ALARLEVDPVGLDHSDRRYLKALIENYGGGPVGLETLSAAIAEARDAVEDMIEPYLLQQG 308

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIP 332
           FIQRT RGR+    A+ HLG+  P
Sbjct: 309 FIQRTQRGRMACARAYLHLGLTPP 332


>gi|260891161|ref|ZP_05902424.1| holliday junction DNA helicase RuvB [Leptotrichia hofstadii F0254]
 gi|260859188|gb|EEX73688.1| holliday junction DNA helicase RuvB [Leptotrichia hofstadii F0254]
          Length = 336

 Score =  361 bits (927), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 175/329 (53%), Positives = 237/329 (72%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M+ E +L      ED     LRPRT +E+ GQ +    + +FI+AAK R E+LDH+L  G
Sbjct: 1   MNEERILEPKELGEDNIQRSLRPRTFKEYIGQQDLKEKMNIFIKAAKMRNESLDHILLYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA V+A E+GVN + T+GPV+ KAGDLAA+LT+LE+ D+LFIDEIHRL+  V
Sbjct: 61  PPGLGKTTLAGVIATEMGVNLKITTGPVLEKAGDLAAILTSLEENDILFIDEIHRLNTSV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILYPAMED +LD+++G+GPSARS+++ L +FTLI ATTR G L+ PL+DRFG+  R+ 
Sbjct: 121 EEILYPAMEDGELDILIGKGPSARSIRVELPQFTLIGATTRAGQLSTPLRDRFGVTHRME 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y++EDLK I++RGA +  ++  ++   EIA RSRGTPRIA RLL+R RDFA V  +  +
Sbjct: 181 YYQLEDLKEIIRRGANILNISYDEDGITEIAKRSRGTPRIANRLLKRARDFALVEGSGIL 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
            +E  D  L  L +D  G D+LD   L  I   + GGPVGIET+S  L E R  IE++ E
Sbjct: 241 EKESVDGILRLLGVDDNGLDELDRNILLSIINVYNGGPVGIETLSLLLGEDRRTIEEVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           PY+++ GFI+RTPRGR++    ++HLGI+
Sbjct: 301 PYLVKIGFIKRTPRGRVVTEFGYKHLGIE 329


>gi|300856545|ref|YP_003781529.1| Holliday junction DNA helicase [Clostridium ljungdahlii DSM 13528]
 gi|300436660|gb|ADK16427.1| Holliday junction DNA helicase [Clostridium ljungdahlii DSM 13528]
          Length = 348

 Score =  361 bits (927), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 170/327 (51%), Positives = 231/327 (70%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M+   +   N+ ++  +   LRP+ L E+ GQ +    LK+FIEAA+ R EALDHVL  G
Sbjct: 1   MEDRIVTPLNIKEDTENEYSLRPKRLNEYIGQKKVKDKLKIFIEAARNRKEALDHVLLYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+G N + TSGP I +AGDLAA+LT+L D DVLFIDEIHRL+  V
Sbjct: 61  PPGLGKTTLANIIAVEMGGNLKITSGPAIERAGDLAAILTSLNDMDVLFIDEIHRLNRSV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILYPAMED+ LD+++G+G +A+S++++L +FTLI ATTRVGLLT PL+DRFG+   + 
Sbjct: 121 EEILYPAMEDYALDIVIGKGAAAKSIRLDLPKFTLIGATTRVGLLTAPLRDRFGVLCPME 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY  ++L  I+ R A +  + +  +AA EI  RSRGTPRIA RLL+RVRD++EV     I
Sbjct: 181 FYREDELSEIIVRSADILKVKIETDAAFEIGKRSRGTPRIANRLLKRVRDYSEVKGNGII 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
             + + AAL  + +D  GFD +D + L  I  NF GGPVGIET++  + E  D I+D+ E
Sbjct: 241 DVKTSQAALELMEVDNEGFDSIDNKILKAIIDNFNGGPVGIETLAYFIGEELDTIQDVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLG 328
           PY++Q+GFI RTPRGR+    A++H  
Sbjct: 301 PYLLQKGFIIRTPRGRVASDSAYRHFN 327


>gi|299144016|ref|ZP_07037096.1| holliday junction DNA helicase RuvB [Peptoniphilus sp. oral taxon
           386 str. F0131]
 gi|298518501|gb|EFI42240.1| holliday junction DNA helicase RuvB [Peptoniphilus sp. oral taxon
           386 str. F0131]
          Length = 338

 Score =  361 bits (927), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 172/334 (51%), Positives = 234/334 (70%), Gaps = 1/334 (0%)

Query: 2   MDREGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M+   ++   ++  + ++ + LRPR L E+ GQ +    LK+FIEAAK R E LDH L  
Sbjct: 1   MEDSRMVEPTITPFDSSNDNTLRPRWLSEYVGQDKVVEKLKIFIEAAKNRHEPLDHCLLN 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTL+ ++A E+GVN + TSGP I + GDLA++L+NL + DVLFIDEIHR++  
Sbjct: 61  GPPGLGKTTLSYIIANEMGVNVKVTSGPAIERPGDLASILSNLNEDDVLFIDEIHRINRS 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMED+ LD+++G+GPSARS++++L +FTLI ATTR G LT+PL+DRFG+ + L
Sbjct: 121 VEEVLYPAMEDYALDIIIGKGPSARSIRLDLEKFTLIGATTRSGQLTSPLRDRFGVILNL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
             Y+I+ L  I+ R A +  +A+  E A EIA RSRGTPRIA RLL+RVRD+AEV  +  
Sbjct: 181 ELYDIDSLTEIIMRSADILNIAIEKEGAMEIACRSRGTPRIANRLLKRVRDYAEVKESGV 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           IT+ +A   L  L IDK G D LD + +  +  NF G PVGI+ I+A + E R  IED  
Sbjct: 241 ITKRVAIKGLNLLDIDKFGLDGLDRKIIRTMIENFMGRPVGIDAIAASIGEERVTIEDAY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           EPY++Q GFI RTPRGR+    A+ H GI+   +
Sbjct: 301 EPYLMQIGFINRTPRGRVPTKAAYDHFGIEYREQ 334


>gi|170741944|ref|YP_001770599.1| Holliday junction DNA helicase RuvB [Methylobacterium sp. 4-46]
 gi|168196218|gb|ACA18165.1| Holliday junction DNA helicase RuvB [Methylobacterium sp. 4-46]
          Length = 359

 Score =  361 bits (927), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 223/319 (69%), Positives = 267/319 (83%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +     +RP +L +FTGQ  A +NL VFIEAA+   +ALDHVLFVGPPGLGKTTLAQ+VA
Sbjct: 30  EVPDGSIRPLSLSDFTGQRAARANLGVFIEAARRTGQALDHVLFVGPPGLGKTTLAQIVA 89

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           RELGVNFRSTSGPVIAKAGDLAA LTNLE+RDVLFIDEIHRL+  VEEILYPAMED+QLD
Sbjct: 90  RELGVNFRSTSGPVIAKAGDLAAQLTNLEERDVLFIDEIHRLNPAVEEILYPAMEDYQLD 149

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           L++GEGP+ARSVKI L RFTL+AATTR GLLT PL+DRFGIPIRL FY +++L+ IV RG
Sbjct: 150 LIIGEGPAARSVKIELPRFTLVAATTRAGLLTTPLRDRFGIPIRLEFYAVDELEAIVARG 209

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255
           A++ G+ +  + A EIA R+RGTPRIAGRLLRRVRDFA V  A T+TR IAD AL  L +
Sbjct: 210 ARVLGIGMAADGANEIARRARGTPRIAGRLLRRVRDFAIVEEAGTVTRAIADRALRLLDV 269

Query: 256 DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR 315
           D  G D +D +YL +IAR++GGGPVG+ETI+A LSEPRDAIE++IEPY++QQGF+QRTPR
Sbjct: 270 DAAGLDTMDRKYLGLIARSYGGGPVGVETIAAALSEPRDAIEEIIEPYLLQQGFVQRTPR 329

Query: 316 GRLLMPIAWQHLGIDIPHR 334
           GRLL P A++HLG+ +P R
Sbjct: 330 GRLLTPHAFRHLGLPVPVR 348


>gi|323342038|ref|ZP_08082271.1| crossover junction ATP-dependent DNA helicase RuvB [Erysipelothrix
           rhusiopathiae ATCC 19414]
 gi|322464463|gb|EFY09656.1| crossover junction ATP-dependent DNA helicase RuvB [Erysipelothrix
           rhusiopathiae ATCC 19414]
          Length = 336

 Score =  361 bits (926), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 179/334 (53%), Positives = 233/334 (69%), Gaps = 5/334 (1%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           +M  E +LS    +E      LRP+TL  + GQ     NLK+FIEAAK+R EALDH+LF 
Sbjct: 5   LMSGEAILSGQDYEE-----SLRPQTLSAYVGQEGLKENLKIFIEAAKSRNEALDHLLFY 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTT+A V+A E+    + TSGP I ++GDLAA+L++LE  DVLFIDEIHR+   
Sbjct: 60  GPPGLGKTTIAHVIANEMQTGIKVTSGPSIERSGDLAAILSSLEPGDVLFIDEIHRMPKA 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDF LDL+VG+  S RS++I+L  FTLI ATTR G L++PL+DRFGI  +L
Sbjct: 120 VEEVLYPAMEDFTLDLVVGKDSSTRSIQIDLPPFTLIGATTRAGDLSSPLRDRFGIISKL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y  ++L+TIV R +++    +  E   EIA RSRGTPRIA RL RRVRDFA+V +   
Sbjct: 180 EYYSQDELETIVSRTSRVLNTVIDREGVSEIAKRSRGTPRIANRLFRRVRDFAQVLNDNV 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +   I   AL +L +D +G D +DLRYL  I   F GGPVGIE I+A +SE    +ED+ 
Sbjct: 240 VDISITKLALDKLKVDHLGLDDVDLRYLRGIIERFDGGPVGIEAIAASISEETMTLEDVY 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           EPY++Q GFI RTPRGR++   A++HL ID+  R
Sbjct: 300 EPYLLQLGFINRTPRGRVVTTKAYEHLKIDVNQR 333


>gi|212550683|ref|YP_002309000.1| Holliday junction DNA helicase RuvB [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212548921|dbj|BAG83589.1| Holliday junction DNA helicase RuvB [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 339

 Score =  361 bits (926), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 171/334 (51%), Positives = 232/334 (69%), Gaps = 1/334 (0%)

Query: 2   MDREGLLSRNVSQEDAD-ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD   + S  +S+ + +  ++LRP   ++F GQ +   NLK+F++AA+ R +ALDHVL  
Sbjct: 1   MDNYNIRSNQLSENEKEFENVLRPLFFKDFGGQDKIIENLKIFVQAARLRGDALDHVLLH 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTL+ ++A EL V F+ TSGPV+ K GDLA +LT+L   DVLFIDEIHRLS +
Sbjct: 61  GPPGLGKTTLSSIIANELNVGFKVTSGPVLDKPGDLAGILTSLGKNDVLFIDEIHRLSPL 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EE LY AMED+++D+M+  G SARS++I +  FTL+ ATTR GLLT+PL+ RFGI + L
Sbjct: 121 IEEYLYSAMEDYRIDIMIDRGASARSIQIEIEPFTLVGATTRSGLLTSPLRTRFGINLHL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y++E L +IV+R A +  +   D AA EIA RSRGTPRI   LLRRVRDFA+V     
Sbjct: 181 EYYDVEALTSIVKRSATILNVLCDDSAAFEIASRSRGTPRICNALLRRVRDFAQVKGNGK 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I + IA  AL  L IDK G D++D + L  I   F GGPVG+ TIS  L E    IE++ 
Sbjct: 241 IEKSIACFALEALNIDKYGLDEIDNKILLTIMDKFNGGPVGLTTISIALGEDPGTIEEVY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           EP+++++GFI+RTPRGR + P+A+ H G  I  +
Sbjct: 301 EPFLVKEGFIKRTPRGREVTPLAYMHFGRPISEK 334


>gi|126663091|ref|ZP_01734089.1| Holliday junction DNA helicase B [Flavobacteria bacterium BAL38]
 gi|126624749|gb|EAZ95439.1| Holliday junction DNA helicase B [Flavobacteria bacterium BAL38]
          Length = 340

 Score =  361 bits (926), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 185/329 (56%), Positives = 232/329 (70%), Gaps = 1/329 (0%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M D       + S +D DI   LRP + ++F GQ +   NL VF++AA  R EALDH LF
Sbjct: 1   MNDNLNPNKESYSPQDIDIEKALRPLSFDDFAGQDQVLENLIVFVQAANLRNEALDHTLF 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A ELGV  + TSGPV+ K GDLA LLTNLEDRDVLFIDEIHRLS 
Sbjct: 61  HGPPGLGKTTLANILANELGVGIKITSGPVLDKPGDLAGLLTNLEDRDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           IVEE LY AMEDF++D+M+  GP+AR+V+INL+ FTL+ ATTR GLLT P++ RFGI  R
Sbjct: 121 IVEEYLYSAMEDFKIDIMIESGPNARTVQINLNPFTLVGATTRSGLLTAPMRARFGIQSR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y  E L TIVQR + +  + +T EAA EIA RSRGTPRIA  LLRRVRDFA++    
Sbjct: 181 LQYYNTELLTTIVQRSSSILKMPITMEAAIEIAGRSRGTPRIANALLRRVRDFAQIKGNG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  EIA  AL  L +D  G D++D + L  I   F GGPVG+ T++  +SE  + IE++
Sbjct: 241 KIDIEIAKFALKALNVDAHGLDEMDNKILLTIIEKFKGGPVGLSTLATAVSESGETIEEV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
            EP++IQ+GFI RTPRGR +   A++HLG
Sbjct: 301 YEPFLIQEGFIMRTPRGREVTEKAYKHLG 329


>gi|81427981|ref|YP_394980.1| Holliday junction DNA helicase B [Lactobacillus sakei subsp. sakei
           23K]
 gi|97190125|sp|Q38YQ9|RUVB_LACSS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|78609622|emb|CAI54668.1| Holliday junction DNA helicase RuvB [Lactobacillus sakei subsp.
           sakei 23K]
          Length = 335

 Score =  361 bits (926), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 171/335 (51%), Positives = 226/335 (67%), Gaps = 2/335 (0%)

Query: 2   MDREGLLSRNVSQ--EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M  E ++S       E +    LRP+ L ++ GQ    + L V+IEAAK R E+LDHVL 
Sbjct: 1   MADERIVSAENDDFAEASIEKTLRPQVLAQYIGQDRVKNELAVYIEAAKKREESLDHVLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA V+A EL V  R+TSGP I + GDL ALL  L+  DVLFIDEIHRL  
Sbjct: 61  YGPPGLGKTTLAMVIANELQVQIRTTSGPAIERPGDLVALLNELQPGDVLFIDEIHRLPK 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LY AMEDF +D++VG+GP+A  V   L  FTLI ATTR GLL+ PL+DRFGI   
Sbjct: 121 MVEELLYSAMEDFYIDIVVGQGPTAHPVHFPLPPFTLIGATTRAGLLSAPLRDRFGIVEH 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           + +Y   DL  IVQR A +  +++  + A EIA RSRGTPRIA RLL+R RD+A+VA   
Sbjct: 181 MAYYTEADLMDIVQRSAGVFNMSIVPDGALEIARRSRGTPRIANRLLKRTRDYAQVADQN 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           TI + IAD AL +L +D  G D +D + L M+   + GGPVG++TI+A + E  + IE++
Sbjct: 241 TIDQAIADHALSQLQVDIRGLDGVDRKILQMMIDYYQGGPVGLKTIAANIGEENETIEEV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
            EPY++Q GF++RT RGR++ P  + HLG+  P +
Sbjct: 301 YEPYLLQIGFLKRTQRGRMVTPAGYAHLGMPYPEK 335


>gi|108804163|ref|YP_644100.1| Holliday junction DNA helicase RuvB [Rubrobacter xylanophilus DSM
           9941]
 gi|122976014|sp|Q1AWE0|RUVB_RUBXD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|108765406|gb|ABG04288.1| Holliday junction DNA helicase subunit RuvB [Rubrobacter
           xylanophilus DSM 9941]
          Length = 355

 Score =  361 bits (926), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 173/328 (52%), Positives = 235/328 (71%), Gaps = 1/328 (0%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
            E  L     +ED D   LRPRTL+EF GQ     NL++F+EAAK R E LDH+L  GPP
Sbjct: 25  EERPLDPAAFEED-DEPTLRPRTLDEFVGQERLKENLRIFVEAAKQRGEPLDHMLLAGPP 83

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKT+L +++A E+GV    TSGP + +AGD+AA+LT+LE+ D LFIDEIHRL+  +EE
Sbjct: 84  GLGKTSLCRILAAEMGVQLHPTSGPSLERAGDMAAILTSLEEGDFLFIDEIHRLNRQIEE 143

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LYPAMEDF +D+++G+GPSAR+++++L RFTL+ ATTR GL+T PL DRFG   RL++Y
Sbjct: 144 VLYPAMEDFAIDIVLGQGPSARTIRMDLPRFTLVGATTRTGLMTKPLLDRFGFSARLDYY 203

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           E  +L+ IV R A++ G+ +T+  A ++A RSRGTPR+A RLL+RVRD+A+V    TI  
Sbjct: 204 EPHELEKIVVRNARILGVPITEGGARQLARRSRGTPRVANRLLKRVRDYAQVVGDGTIDE 263

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           E A+AAL    +D +G D+ D  YL++I   F GGPVG+ T+S  L E RD +ED+ EPY
Sbjct: 264 ETANAALEMQGVDHLGLDRTDREYLSLIIEKFDGGPVGVGTLSVALGEARDTVEDVYEPY 323

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           ++Q G IQRT RGR+    A+ HLG  +
Sbjct: 324 LLQSGLIQRTSRGRVATRHAYAHLGFPV 351


>gi|330998026|ref|ZP_08321857.1| Holliday junction DNA helicase RuvB [Paraprevotella xylaniphila YIT
           11841]
 gi|329569327|gb|EGG51107.1| Holliday junction DNA helicase RuvB [Paraprevotella xylaniphila YIT
           11841]
          Length = 344

 Score =  361 bits (926), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 174/329 (52%), Positives = 232/329 (70%), Gaps = 2/329 (0%)

Query: 2   MDREGLL--SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M+ +  +  S N S E    + LRP    +F+GQ++   NLKVF+EAAK R E LDH L 
Sbjct: 1   MEEDFDIRRSSNSSAEREFENALRPLQFGDFSGQLKVVENLKVFVEAAKYRGEPLDHTLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTL+ ++A ELGV F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS 
Sbjct: 61  HGPPGLGKTTLSNIIANELGVGFKVTSGPVLDKPGDLAGILTSLEPNDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE LY AMED+++D+M+ +GPSARS++++L+ FTL+ ATTR GLLT PL+ RFGI + 
Sbjct: 121 VVEEYLYSAMEDYRIDIMIDKGPSARSIQLDLNPFTLVGATTRSGLLTAPLRARFGINLH 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y+ E L  IV+R A +  + +  +AA EIA RSRGTPRIA  LLRRVRDFA+V    
Sbjct: 181 LEYYDAEVLSRIVERSAHILSVPIEHDAAMEIAGRSRGTPRIANALLRRVRDFAQVRGTG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            +   IA  AL  L ID+ G D++D + L  I   F GGPVGI TI+  + E    +E++
Sbjct: 241 RVDMAIARYALEALNIDRYGLDEIDNKILLTIIDKFKGGPVGITTIATAIGEDAGTVEEV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
            EP++I++GFI+RTPRGR +  +A++HLG
Sbjct: 301 YEPFLIKEGFIKRTPRGREVTDMAYKHLG 329


>gi|167041791|gb|ABZ06533.1| putative Holliday junction DNA helicase ruvB C-terminal domain
           [uncultured marine microorganism HF4000_093M11]
          Length = 354

 Score =  361 bits (926), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 180/331 (54%), Positives = 238/331 (71%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
            E +++      +     LRP  L ++ GQ E   NL V+I AAK R  ALDHVL  GPP
Sbjct: 18  EERMVAPEQQLGEKFDQSLRPERLRDYIGQKEIKENLVVYIGAAKKRGHALDHVLLSGPP 77

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA + +RE+ V  R+TSGPVI + GDLAA+LTNLE   + FIDEIHRL+ +VEE
Sbjct: 78  GLGKTTLANIFSREMEVPLRATSGPVIERQGDLAAILTNLEPGTIFFIDEIHRLNRVVEE 137

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LY AMEDF LD+++GEGP AR+VKI+L  FTL+ ATTR GLLT+PL++RFGI  RLNFY
Sbjct: 138 VLYGAMEDFTLDIIIGEGPGARTVKIDLPHFTLVGATTRAGLLTSPLRERFGIQFRLNFY 197

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           + E+LKTI+ R A L G+ + +EA+ E+A R+RGTPRIA RLL+R RDFA++  +  IT 
Sbjct: 198 DPEELKTIILRAASLLGIEIVEEASLELARRARGTPRIANRLLKRCRDFADMETSGVITL 257

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
            +   +L ++ ID  G DQ+D   L  I   FGGGPVG+ T++A +SE +D IED+ EP+
Sbjct: 258 PLVVRSLEKMRIDLEGLDQMDRLILEAIIEKFGGGPVGLSTLAASVSEEKDTIEDVYEPF 317

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           ++ +GF+QRTPRGR+    A+QHLGI IPH+
Sbjct: 318 LLVKGFLQRTPRGRMATERAYQHLGISIPHK 348


>gi|162455498|ref|YP_001617865.1| Holliday junction DNA helicase RuvB [Sorangium cellulosum 'So ce
           56']
 gi|161166080|emb|CAN97385.1| holliday junction DNA helicase [Sorangium cellulosum 'So ce 56']
          Length = 340

 Score =  361 bits (926), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 181/331 (54%), Positives = 227/331 (68%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M    L       +D    L RP +L E+ GQ +   NLKVF+EAA+ R E LDH+LF G
Sbjct: 1   MPERALSPAETGDDDRFDRLFRPASLAEYVGQAKHTENLKVFVEAARRRREPLDHMLFCG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++ARE+GV    TSGP I   G LA LLT LE  DVLFIDEIHRL+  V
Sbjct: 61  PPGLGKTTLAHIIAREMGVALHVTSGPAIEHKGALAGLLTKLERNDVLFIDEIHRLTPAV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE LYPA+E F +D+M G+GP A ++++ L  FTL+ ATTR GLLT PL  RFG  +RL+
Sbjct: 121 EESLYPAIESFNIDIMTGDGPYATTIQLALKPFTLVGATTRTGLLTAPLLSRFGHVVRLD 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY +E+L+ IVQR A L  + +    A EIA R+RGTPR+A RLLRRVRDFAEV     I
Sbjct: 181 FYPVEELQRIVQRSAGLLDVPIDAGGAREIAARARGTPRVANRLLRRVRDFAEVLGDGAI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T EIA     RL ID  G D++D R L +I  ++ GGPVGI+T++A LSEPRD IED+ E
Sbjct: 241 TMEIARKTAERLEIDAAGLDEMDRRLLRVIVDHYDGGPVGIDTLAAALSEPRDTIEDVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           P+++QQGF+ RTPRGR+    A++HLG+  P
Sbjct: 301 PFLLQQGFVGRTPRGRVATRRAYEHLGLAAP 331


>gi|85703559|ref|ZP_01034663.1| Holliday junction DNA helicase RuvB [Roseovarius sp. 217]
 gi|85672487|gb|EAQ27344.1| Holliday junction DNA helicase RuvB [Roseovarius sp. 217]
          Length = 344

 Score =  361 bits (926), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 208/332 (62%), Positives = 253/332 (76%), Gaps = 1/332 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M + +  L      ED D   LRP+ L EF GQ EA +NL VFI++A+ R +A+DH LF 
Sbjct: 1   MAEPDPTLRGAALPEDQD-RSLRPQALSEFIGQKEARANLAVFIQSARQRGDAMDHTLFH 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++ARELGV FR TSGPV+AKAGDLAA+LTNLE  DVLFIDEIHRL+  
Sbjct: 60  GPPGLGKTTLAQIMARELGVGFRMTSGPVLAKAGDLAAILTNLERNDVLFIDEIHRLNPA 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDF+LDL++GEGP+AR+V+I L  FTL+ ATTR+GLLT PL+DRFGIP RL
Sbjct: 120 VEEVLYPAMEDFELDLVIGEGPAARTVRIELQPFTLVGATTRLGLLTTPLRDRFGIPTRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FYEI++L  IV R AKL  +    E A EIA R+RGTPRIAGRLLRRV DFA V     
Sbjct: 180 QFYEIDELHEIVTRNAKLLNIPTDTEGAREIARRARGTPRIAGRLLRRVVDFAVVEGGGK 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I+R +AD++L RL +D +G D  D RYL +IA  + GGPVGIET+SA LSE RDA+E++I
Sbjct: 240 ISRALADSSLTRLGVDHLGLDGADRRYLRLIAEAYQGGPVGIETLSAALSESRDALEEVI 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EP+++QQG IQRTPRGR+L    W HLG+  P
Sbjct: 300 EPFLLQQGLIQRTPRGRMLAQGGWAHLGLAAP 331


>gi|227550816|ref|ZP_03980865.1| crossover junction endoribonuclease subunit B [Enterococcus faecium
           TX1330]
 gi|257887928|ref|ZP_05667581.1| holliday junction DNA helicase RuvB [Enterococcus faecium
           1,141,733]
 gi|257893271|ref|ZP_05672924.1| holliday junction DNA helicase RuvB [Enterococcus faecium
           1,231,408]
 gi|257896454|ref|ZP_05676107.1| holliday junction DNA helicase RuvB [Enterococcus faecium Com12]
 gi|293377529|ref|ZP_06623724.1| Holliday junction DNA helicase RuvB [Enterococcus faecium PC4.1]
 gi|227180053|gb|EEI61025.1| crossover junction endoribonuclease subunit B [Enterococcus faecium
           TX1330]
 gi|257823982|gb|EEV50914.1| holliday junction DNA helicase RuvB [Enterococcus faecium
           1,141,733]
 gi|257829650|gb|EEV56257.1| holliday junction DNA helicase RuvB [Enterococcus faecium
           1,231,408]
 gi|257833019|gb|EEV59440.1| holliday junction DNA helicase RuvB [Enterococcus faecium Com12]
 gi|292643844|gb|EFF61959.1| Holliday junction DNA helicase RuvB [Enterococcus faecium PC4.1]
          Length = 333

 Score =  360 bits (925), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 170/331 (51%), Positives = 226/331 (68%), Gaps = 1/331 (0%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M  E LLS    + +  +   LRP+ L ++ GQ +    L+++IEAA+ R E LDHVL  
Sbjct: 1   MTDEYLLSPETGENELSLEKSLRPQLLSQYIGQRKVKQELQIYIEAARNREEPLDHVLLY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTT+A V+A E+ VN R+TSGP I + GDL A+L  LE  DVLFIDEIHRL  +
Sbjct: 61  GPPGLGKTTMAMVIANEMNVNIRTTSGPAIERPGDLVAILNELEAGDVLFIDEIHRLPRV 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LY AMEDF +D+MVG+GP+A  V   L  FTLI ATTR G+L+ PL+DRFGI   +
Sbjct: 121 VEEMLYSAMEDFYVDIMVGQGPTAHPVHFPLPPFTLIGATTRAGMLSAPLRDRFGIISHM 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y+ +DL+ IV R + +    + +E A EIA RSRGTPRIA RLL+RVRDFA+V     
Sbjct: 181 EYYDEQDLQEIVLRSSDIFQTEIIEEGALEIARRSRGTPRIANRLLKRVRDFAQVQGDGK 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I R IAD AL  L +D+ G D +D + L  +   +GGGPVG+ T+S  + E R+ +ED+ 
Sbjct: 241 IDRPIADQALTLLQVDQAGLDYVDQKLLRTMIELYGGGPVGLSTLSVNIGEERETVEDMY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           EPY+IQ+GF++RTPRGR+    A++H G D 
Sbjct: 301 EPYLIQKGFLKRTPRGRMATAYAYEHFGYDY 331


>gi|322437278|ref|YP_004219490.1| Holliday junction DNA helicase RuvB [Acidobacterium sp. MP5ACTX9]
 gi|321165005|gb|ADW70710.1| Holliday junction DNA helicase RuvB [Acidobacterium sp. MP5ACTX9]
          Length = 339

 Score =  360 bits (925), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 172/334 (51%), Positives = 244/334 (73%), Gaps = 1/334 (0%)

Query: 2   MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M  + ++S     ED+   L LRP  L EF GQ +A   L + +EAAK+R EALDHVL  
Sbjct: 1   MSDDRIVSAAPLDEDSLFELKLRPTRLAEFIGQSKAKEQLAIALEAAKSRGEALDHVLLF 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A E+GV F+ TSGP +   GDL A+L+N++D+ VLF+DE+HRL  +
Sbjct: 61  GPPGLGKTTLATIIANEMGVGFQQTSGPALMIQGDLTAILSNIKDKQVLFLDEVHRLQPV 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           ++E LY A+ED+ LD+M+G GP+AR+  +++  FT +AATTR GLL++P++ RFGI +RL
Sbjct: 121 LQEKLYTALEDYSLDIMIGSGPAARTFVLDIKPFTFVAATTRPGLLSSPMRARFGILLRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  ++L+ IV+R A++ G+ +  + A EIAMRSRGTPRIA RLLRRVRD+A+V  A  
Sbjct: 181 EFYTDDELRFIVERSAEVLGVPIDRDGAAEIAMRSRGTPRIANRLLRRVRDYAQVRAAGV 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I RE A+AAL  L +D  GFD+LD R L  I   + GGPVG+ T++A L+E +DA+E++ 
Sbjct: 241 IDRETANAALEMLEVDAHGFDELDRRLLRTIIEKYDGGPVGLNTLAAALAEEQDALEEVY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           EP++IQ GF+ RTPRGR+   +A++HLG+++P +
Sbjct: 301 EPFLIQIGFLDRTPRGRVATRLAYEHLGLEMPRK 334


>gi|94676565|ref|YP_588761.1| Holliday junction DNA helicase B [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
 gi|122988117|sp|Q1LTF3|RUVB_BAUCH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|94219715|gb|ABF13874.1| Holliday junction DNA helicase RuvB [Baumannia cicadellinicola str.
           Hc (Homalodisca coagulata)]
          Length = 335

 Score =  360 bits (925), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 178/329 (54%), Positives = 239/329 (72%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M++ + L   ++  +   I   RP+ L ++ GQ      +K+FI+AAK R +ALDHVL  
Sbjct: 1   MIEADNLNVTSIITDYNPIVDYRPKKLVDYIGQTNVREQMKIFIQAAKMRGDALDHVLLF 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A E+  + RSTSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS +
Sbjct: 61  GPPGLGKTTLANIIANEMEGSLRSTSGPVLEKAGDLAAILTNLEPHDVLFIDEIHRLSPV 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EEILYPAMED++LD+++GEGP+ARS+KI +  FTL+ ATTR+G +T+PL+DRFGI  RL
Sbjct: 121 IEEILYPAMEDYKLDIIIGEGPAARSIKIQIPPFTLVGATTRIGSITSPLRDRFGIVQRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  +DL+ I+ R A    L++TD    EIA R+RGTPRIA RLLRRVRDFAEV  A  
Sbjct: 181 EFYPTKDLQNIISRSAANLSLSITDGGLSEIAKRARGTPRIALRLLRRVRDFAEVRAAGK 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           IT  +A  AL  L +D  GF+ +D + L +I   F GGPVG++ ++A + E R+ IED++
Sbjct: 241 ITNNVAMNALNMLNVDTAGFNFMDRQLLLVIINKFLGGPVGLDNLAAAIGEERETIEDVL 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           EP++IQQGF+QRTPRGR+    A++H  +
Sbjct: 301 EPFLIQQGFLQRTPRGRIATAEAYRHFSL 329


>gi|83859805|ref|ZP_00953325.1| Holliday junction DNA helicase RuvB [Oceanicaulis alexandrii
           HTCC2633]
 gi|83852164|gb|EAP90018.1| Holliday junction DNA helicase RuvB [Oceanicaulis alexandrii
           HTCC2633]
          Length = 345

 Score =  360 bits (925), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 205/334 (61%), Positives = 252/334 (75%), Gaps = 1/334 (0%)

Query: 1   MMD-REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M D  + ++S   +  D     LRP + +EF GQ  A +NLKVF +AA  R EALDHVL 
Sbjct: 1   MSDAEDRIISAEANPGDGRDKALRPLSFDEFVGQPAAIANLKVFTQAAARRGEALDHVLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLAQ+VA+ELGVNFR+TSGPVIAKAGDLAA+LTNLE+RDVLFIDEIHRL  
Sbjct: 61  SGPPGLGKTTLAQIVAKELGVNFRATSGPVIAKAGDLAAILTNLEERDVLFIDEIHRLLP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEEILYPAMEDF LDL++GEGPSAR+V+I+L  FTL+ ATTR GLL  PL+DRFG+P+R
Sbjct: 121 AVEEILYPAMEDFCLDLVIGEGPSARTVRIDLPPFTLVGATTRAGLLATPLRDRFGVPVR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY  E+L  IV R A   G  ++++ A EIA R+RGTPR+AGRLLRRVRDFAE     
Sbjct: 181 LEFYSTEELSGIVARAANKLGAPMSEDGATEIAKRARGTPRVAGRLLRRVRDFAEEDGVP 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  + ADAAL RL +D +G D LD RYL ++   FGGGP G+ET++A  +E RDA+ED+
Sbjct: 241 VINAKAADAALRRLEVDAVGLDSLDRRYLRVLIEGFGGGPAGVETLAAACAEARDALEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +EP++IQQGFI RTPRGR+    A++HLG  +P 
Sbjct: 301 VEPFLIQQGFIMRTPRGRVAAKRAYEHLGFTMPR 334


>gi|167755867|ref|ZP_02427994.1| hypothetical protein CLORAM_01384 [Clostridium ramosum DSM 1402]
 gi|237734835|ref|ZP_04565316.1| holliday junction DNA helicase B [Mollicutes bacterium D7]
 gi|167704806|gb|EDS19385.1| hypothetical protein CLORAM_01384 [Clostridium ramosum DSM 1402]
 gi|229382163|gb|EEO32254.1| holliday junction DNA helicase B [Coprobacillus sp. D7]
          Length = 329

 Score =  360 bits (925), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 172/332 (51%), Positives = 233/332 (70%), Gaps = 3/332 (0%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M R  +L  NV  +D   S LRP + +E+ GQ     NLKVF+ AAK R E+LDHVL  G
Sbjct: 1   MTRNEILDANVIDDD---SSLRPSSFDEYVGQTNLKENLKVFVGAAKLRDESLDHVLLYG 57

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTT++ ++A E+G N + T+GP I K GDL A+LT LE  DVLFIDEIHRL+ +V
Sbjct: 58  PPGLGKTTMSMIIANEMGTNIKITTGPSIEKTGDLVAILTALEPGDVLFIDEIHRLNKVV 117

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILYPAMEDF +D+++G+  S RSV+I+L  FTL+ ATTR G L+ PL+DRFGI  +L 
Sbjct: 118 EEILYPAMEDFCVDVVIGKEASTRSVRIDLPPFTLVGATTRAGDLSAPLRDRFGIISKLE 177

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y+  DLKTI+ R +++  + + D+A   +AMRSRGTPRIA RL RRVRDFA+    + I
Sbjct: 178 YYDETDLKTIIDRTSRVYSMPMDDDAKSALAMRSRGTPRIANRLFRRVRDFAQFNGEEII 237

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           ++E    AL RL +D++G D +D +YL  I   F GGPVG+E+++A + E    +ED+ E
Sbjct: 238 SKERTIEALDRLKVDQLGLDDVDHKYLLGIIHRFKGGPVGLESLAASIGEEPQTLEDVYE 297

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           PY++Q G I+RTPRGR+    A++HL I+I  
Sbjct: 298 PYLLQIGLIKRTPRGRVATSEAYKHLNINIDE 329


>gi|332881690|ref|ZP_08449338.1| Holliday junction DNA helicase RuvB [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332680329|gb|EGJ53278.1| Holliday junction DNA helicase RuvB [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 344

 Score =  360 bits (925), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 174/329 (52%), Positives = 232/329 (70%), Gaps = 2/329 (0%)

Query: 2   MDREGLL--SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M+ +  +  S N S E    + LRP    +F+GQ++   NLKVF+EAAK R E LDH L 
Sbjct: 1   MEEDFDIRRSSNSSAEREFENALRPLQFGDFSGQLKVVENLKVFVEAAKYRGEPLDHTLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTL+ ++A ELGV F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS 
Sbjct: 61  HGPPGLGKTTLSNIIANELGVGFKVTSGPVLDKPGDLAGILTSLEPNDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE LY AMED+++D+M+ +GPSARS++++L+ FTL+ ATTR GLLT PL+ RFGI + 
Sbjct: 121 VVEEYLYSAMEDYRIDIMIDKGPSARSIQLDLNPFTLVGATTRSGLLTAPLRARFGINLH 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y+ E L  IV+R A +  + +  +AA EIA RSRGTPRIA  LLRRVRDFA+V    
Sbjct: 181 LEYYDAEVLSRIVERSAHILSVPIEHDAAMEIAGRSRGTPRIANALLRRVRDFAQVRGTG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            +   IA  AL  L ID+ G D++D + L  I   F GGPVGI TI+  + E    +E++
Sbjct: 241 RVDMAIARYALEALNIDRYGLDEIDNKILLTIIDKFKGGPVGITTIATAIGEDAGTVEEV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
            EP++I++GFI+RTPRGR +  +A++HLG
Sbjct: 301 YEPFLIKEGFIKRTPRGREVTDMAYKHLG 329


>gi|257087894|ref|ZP_05582255.1| holliday junction DNA helicase RuvB [Enterococcus faecalis D6]
 gi|256995924|gb|EEU83226.1| holliday junction DNA helicase RuvB [Enterococcus faecalis D6]
          Length = 332

 Score =  360 bits (925), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 172/326 (52%), Positives = 222/326 (68%), Gaps = 1/326 (0%)

Query: 7   LLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           +LS    + +A I   LRP+ L ++ GQ +    L ++IEAAK R EALDH L  GPPGL
Sbjct: 1   MLSAASQEAEASIEKSLRPQFLAQYIGQDKVKQELTIYIEAAKNRNEALDHTLLYGPPGL 60

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTT+A V+A E+ VN R+TSGP I +AGDL A+L  LE  DVLFIDEIHRL  +VEE+L
Sbjct: 61  GKTTMAMVIANEMNVNIRTTSGPAIERAGDLVAILNELEPGDVLFIDEIHRLPRVVEEML 120

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           Y AMEDF +D+MVG+G +A  V   L  FTL+ ATTR G+L+ PL+DRFGI   + +Y+ 
Sbjct: 121 YSAMEDFYIDIMVGQGTTAHPVHFPLPPFTLVGATTRAGMLSAPLRDRFGIISHMEYYQE 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           +DLK IV R A +    + +E A EIA RSRGTPRIA RLL+RVRDFA+V     I R I
Sbjct: 181 QDLKEIVLRSADIFQTEIFEEGAFEIARRSRGTPRIANRLLKRVRDFAQVQSDGKIDRAI 240

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           AD AL  L +D  G D +D + L  +   +GGGPVG+ T+S  + E  + +ED+ EPY+I
Sbjct: 241 ADKALTLLQVDHQGLDYVDQKLLKTMIDLYGGGPVGLSTLSVNIGEETETVEDMYEPYLI 300

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDI 331
           Q+GFI+RTPRGR+  P A+ H G D 
Sbjct: 301 QKGFIKRTPRGRIATPFAYAHFGYDY 326


>gi|169350137|ref|ZP_02867075.1| hypothetical protein CLOSPI_00879 [Clostridium spiroforme DSM 1552]
 gi|169292920|gb|EDS75053.1| hypothetical protein CLOSPI_00879 [Clostridium spiroforme DSM 1552]
          Length = 330

 Score =  360 bits (925), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 170/329 (51%), Positives = 232/329 (70%), Gaps = 2/329 (0%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M R  +L  N+S+ED   S LRP + +E+ GQ     NLKVF+ AAK R E LDHVL  G
Sbjct: 1   MTRNEVLDANISEED--ESGLRPSSFDEYVGQTSLKENLKVFVGAAKLRDEPLDHVLLYG 58

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTT++ ++A E+G N + T+GP I K GDL A+LT LE  DVLFIDEIHRL+ +V
Sbjct: 59  PPGLGKTTMSMIIANEMGTNIKITTGPSIEKTGDLVAILTALEPGDVLFIDEIHRLNKVV 118

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILYPAMEDF +D+++G+  S RSV+I+L  FTL+ ATTR G L+ PL+DRFGI  +L 
Sbjct: 119 EEILYPAMEDFCVDVVIGKEASTRSVRIDLPPFTLVGATTRAGDLSAPLRDRFGIVSKLE 178

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y  ++LK I+ R +++  + + D+A   +AMRSRGTPRIA RL RRVRDFA+    + I
Sbjct: 179 YYSEDELKVIIDRTSRVYQMPMDDDAKTALAMRSRGTPRIANRLFRRVRDFAQFNGEEII 238

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T+E    AL RL +D++G D++D +YL  I   F GGPVG+E+++  + E    +ED+ E
Sbjct: 239 TKERTVEALDRLKVDRLGLDEVDHKYLLGIIHRFKGGPVGLESLAVSIGEEPRTLEDVYE 298

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           PY++Q G I+RTPRGR+    A++HL I+
Sbjct: 299 PYLLQIGLIKRTPRGRIATYEAYKHLNIE 327


>gi|163786540|ref|ZP_02180988.1| Holliday junction DNA helicase RuvB [Flavobacteriales bacterium
           ALC-1]
 gi|159878400|gb|EDP72456.1| Holliday junction DNA helicase RuvB [Flavobacteriales bacterium
           ALC-1]
          Length = 340

 Score =  360 bits (925), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 185/329 (56%), Positives = 235/329 (71%), Gaps = 1/329 (0%)

Query: 1   MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M +     + N S E+ D+   LRP T ++FTGQ +   NL VF++AA  R EALDH LF
Sbjct: 1   MNENLNPSNDNFSPEELDVEKKLRPLTFDDFTGQDQVLENLLVFVQAANLRDEALDHTLF 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +++ EL V  + TSGPV+ K GDLA LLTNLEDRDVLFIDEIHRLS 
Sbjct: 61  HGPPGLGKTTLAHILSNELEVGIKVTSGPVLDKPGDLAGLLTNLEDRDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           IVEE LY AMED+++D+M+  GP+AR+V+INL+ FTL+ ATTR GLLT P++ RFGI  R
Sbjct: 121 IVEEYLYSAMEDYKIDIMIESGPNARTVQINLNPFTLVGATTRSGLLTAPMRARFGISSR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y+ + L TIVQR A +  + ++ EAA EIA RSRGTPRIA  LLRRVRDFA++    
Sbjct: 181 LQYYKTDLLTTIVQRSASILDVPISMEAAIEIAGRSRGTPRIANALLRRVRDFAQIKGDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  +IA  AL  L +D  G D++D + LT I   F GGPVGI TI+  +SE  + IE++
Sbjct: 241 KIDIKIAKFALEALNVDAHGLDEMDNKILTTIIDKFKGGPVGISTIATAVSESTETIEEV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
            EP++IQQGFI RTPRGR +   A++HLG
Sbjct: 301 YEPFLIQQGFIMRTPRGREVTEQAYKHLG 329


>gi|227825065|ref|ZP_03989897.1| holliday junction DNA helicase ruvB [Acidaminococcus sp. D21]
 gi|226905564|gb|EEH91482.1| holliday junction DNA helicase ruvB [Acidaminococcus sp. D21]
          Length = 335

 Score =  360 bits (924), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 178/333 (53%), Positives = 241/333 (72%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M + + +++     +D     LRPR L+E+ GQ +   N+ VFI+AA  R EALDHVL  
Sbjct: 1   MEEDQRIIAGGEQVQDGWQYSLRPRRLQEYIGQEKVKENMTVFIQAALKRREALDHVLLY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A ELGVN R TSGP + + GDLAA+LTNL++ +VLFIDEIHRL   
Sbjct: 61  GPPGLGKTTLANIIANELGVNIRITSGPALERQGDLAAILTNLDESEVLFIDEIHRLPKT 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILY AMED+ LD+++G+GP+ARSV+++L RFTLI ATTR+G +  PL+DRFG+   L
Sbjct: 121 VEEILYSAMEDYALDIIIGKGPAARSVRLDLPRFTLIGATTRMGSVAAPLRDRFGVICHL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  E+L+ IV+R A++  + +  E A EI  RSRGTPR+A RLL+RVRDFAEVA A T
Sbjct: 181 EFYTAEELQIIVERAAEILNVKIDHEGAYEIGRRSRGTPRVANRLLKRVRDFAEVAGADT 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           IT+EI    + RL ID +G D+ D R LT + ++FGG PVG++T++A L+E  + +ED+ 
Sbjct: 241 ITKEICRKTMERLEIDDLGLDRSDRRLLTKLVKDFGGRPVGVDTLAASLNEESETLEDVY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY++Q G +QRTP+GR     A+++LGI  P 
Sbjct: 301 EPYLMQLGMLQRTPKGRQATAAAYRYLGIAYPE 333


>gi|221632730|ref|YP_002521951.1| Holliday junction DNA helicase RuvB [Thermomicrobium roseum DSM
           5159]
 gi|254767447|sp|B9KZ09|RUVB_THERP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|221155832|gb|ACM04959.1| Holliday junction DNA helicase RuvB [Thermomicrobium roseum DSM
           5159]
          Length = 353

 Score =  360 bits (923), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 179/333 (53%), Positives = 238/333 (71%), Gaps = 1/333 (0%)

Query: 2   MDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M+   +++   +  E      LRPR L E+ GQ     +L + I AA+ R E LDH+LF 
Sbjct: 1   MNEPRIVAPQPTTSEQYFEETLRPRRLAEYIGQDRVKESLAIAIRAAQERGEPLDHLLFY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A E+GVN R TSGP I + GDL ++LTNL   DVLFIDEIHRL+ +
Sbjct: 61  GPPGLGKTTLAGIIAAEMGVNLRITSGPAIERPGDLVSILTNLRPGDVLFIDEIHRLNRL 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILYPAMEDF +DL++G+GP+ARSV+I L RFTL+ ATTR+ LLT+PL+DRFG   RL
Sbjct: 121 VEEILYPAMEDFAVDLVIGKGPAARSVRIALPRFTLVGATTRLALLTSPLRDRFGATYRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           +FY+   L+ IV+R A++  + +T + A EIA R RGTPRIA RLL+RVRD+A+V    T
Sbjct: 181 DFYDTAALRAIVERAARILQVPITSDGAEEIARRGRGTPRIAIRLLKRVRDYAQVIGDGT 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           ITRE+A  AL +LA+D++G D++D   L  +   F GGPVGI+T++A  SE  D IE + 
Sbjct: 241 ITRELARLALDQLAVDELGLDEVDRLILRTLVEKFDGGPVGIQTLAAATSEEPDTIESVY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY++Q GF+QRTPRGR+    A++HLG+  P 
Sbjct: 301 EPYLLQLGFLQRTPRGRIATRRAYEHLGLTYPE 333


>gi|255971608|ref|ZP_05422194.1| holliday junction DNA helicase RuvB [Enterococcus faecalis T1]
 gi|255974580|ref|ZP_05425166.1| holliday junction DNA helicase RuvB [Enterococcus faecalis T2]
 gi|256761915|ref|ZP_05502495.1| holliday junction DNA helicase RuvB [Enterococcus faecalis T3]
 gi|256956954|ref|ZP_05561125.1| holliday junction DNA helicase RuvB [Enterococcus faecalis DS5]
 gi|256960753|ref|ZP_05564924.1| holliday junction DNA helicase RuvB [Enterococcus faecalis Merz96]
 gi|256964043|ref|ZP_05568214.1| holliday junction DNA helicase RuvB [Enterococcus faecalis
           HIP11704]
 gi|257078630|ref|ZP_05572991.1| holliday junction DNA helicase RuvB [Enterococcus faecalis JH1]
 gi|257081406|ref|ZP_05575767.1| holliday junction DNA helicase RuvB [Enterococcus faecalis E1Sol]
 gi|257084065|ref|ZP_05578426.1| holliday junction DNA helicase RuvB [Enterococcus faecalis Fly1]
 gi|257088549|ref|ZP_05582910.1| holliday junction DNA helicase ruvB [Enterococcus faecalis CH188]
 gi|257417485|ref|ZP_05594479.1| holliday junction DNA helicase RuvB [Enterococcus faecalis AR01/DG]
 gi|257418784|ref|ZP_05595778.1| holliday junction DNA helicase ruvB [Enterococcus faecalis T11]
 gi|255962626|gb|EET95102.1| holliday junction DNA helicase RuvB [Enterococcus faecalis T1]
 gi|255967452|gb|EET98074.1| holliday junction DNA helicase RuvB [Enterococcus faecalis T2]
 gi|256683166|gb|EEU22861.1| holliday junction DNA helicase RuvB [Enterococcus faecalis T3]
 gi|256947450|gb|EEU64082.1| holliday junction DNA helicase RuvB [Enterococcus faecalis DS5]
 gi|256951249|gb|EEU67881.1| holliday junction DNA helicase RuvB [Enterococcus faecalis Merz96]
 gi|256954539|gb|EEU71171.1| holliday junction DNA helicase RuvB [Enterococcus faecalis
           HIP11704]
 gi|256986660|gb|EEU73962.1| holliday junction DNA helicase RuvB [Enterococcus faecalis JH1]
 gi|256989436|gb|EEU76738.1| holliday junction DNA helicase RuvB [Enterococcus faecalis E1Sol]
 gi|256992095|gb|EEU79397.1| holliday junction DNA helicase RuvB [Enterococcus faecalis Fly1]
 gi|256997361|gb|EEU83881.1| holliday junction DNA helicase ruvB [Enterococcus faecalis CH188]
 gi|257159313|gb|EEU89273.1| holliday junction DNA helicase RuvB [Enterococcus faecalis ARO1/DG]
 gi|257160612|gb|EEU90572.1| holliday junction DNA helicase ruvB [Enterococcus faecalis T11]
          Length = 332

 Score =  360 bits (923), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 172/326 (52%), Positives = 222/326 (68%), Gaps = 1/326 (0%)

Query: 7   LLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           +LS    + +A I   LRP+ L ++ GQ +    L ++IEAAK R EALDH L  GPPGL
Sbjct: 1   MLSAASQEAEASIEKSLRPQFLAQYIGQDKVKQELTIYIEAAKNRNEALDHTLLYGPPGL 60

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTT+A V+A E+ VN R+TSGP I +AGDL A+L  LE  DVLFIDEIHRL  +VEE+L
Sbjct: 61  GKTTMAMVIANEMNVNIRTTSGPAIERAGDLVAILNELEPGDVLFIDEIHRLPRVVEEML 120

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           Y AMEDF +D+MVG+G +A  V   L  FTL+ ATTR G+L+ PL+DRFGI   + +Y+ 
Sbjct: 121 YSAMEDFYIDIMVGQGTTAHPVHFPLPPFTLVGATTRAGMLSAPLRDRFGIISHMEYYQE 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           +DLK IV R A +    + +E A EIA RSRGTPRIA RLL+RVRDFA+V     I R I
Sbjct: 181 QDLKEIVLRSADIFQTEIFEEGAFEIARRSRGTPRIANRLLKRVRDFAQVQSDGKIDRAI 240

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           AD AL  L +D  G D +D + L  +   +GGGPVG+ T+S  + E  + +ED+ EPY+I
Sbjct: 241 ADKALTLLQVDHQGLDYVDQKLLKTMIDLYGGGPVGLSTLSVNIGEETETVEDMYEPYLI 300

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDI 331
           Q+GFI+RTPRGR+  P A+ H G D 
Sbjct: 301 QKGFIKRTPRGRIATPFAYAHFGYDY 326


>gi|167644752|ref|YP_001682415.1| Holliday junction DNA helicase RuvB [Caulobacter sp. K31]
 gi|189046023|sp|B0SUN9|RUVB_CAUSK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|167347182|gb|ABZ69917.1| Holliday junction DNA helicase RuvB [Caulobacter sp. K31]
          Length = 348

 Score =  360 bits (923), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 202/331 (61%), Positives = 252/331 (76%), Gaps = 4/331 (1%)

Query: 6   GLLSRNVSQED----ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
            ++S    Q +    A    LRP+TL EF GQ +A +NL++FIEAAK R EALDHVL  G
Sbjct: 3   RIISGEAQQGEQIPGASDRALRPQTLAEFVGQEQAKANLRIFIEAAKGRGEALDHVLLFG 62

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLAQ+VARELGVNFR+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRL   V
Sbjct: 63  PPGLGKTTLAQIVARELGVNFRATSGPVLNKAGDLAAILTNLEANDVLFIDEIHRLPSTV 122

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILYPAMED  LDL++GEGPSARS++I+L+ FTL+AATTR G+L  PL+DRFGIPIRL 
Sbjct: 123 EEILYPAMEDHVLDLVIGEGPSARSIRIDLAPFTLVAATTRAGMLATPLRDRFGIPIRLE 182

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY  ++L+ ++   A+  G  + ++ A EIA R+RGTPR+AGRLLRRVRDFA    A  I
Sbjct: 183 FYTPKELQHVLLGAARKMGAPLNEDGAAEIAARARGTPRVAGRLLRRVRDFASADGASVI 242

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
            R+ A  AL RL +D++G D LD RYL  +  N+GGGP G+ET++  ++E RDA+ED+IE
Sbjct: 243 DRKAAGMALARLEVDELGLDSLDRRYLRALIENYGGGPAGVETLAYAIAEARDAVEDVIE 302

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           PY++QQGFIQRTPRGR+    A+ HLG+  P
Sbjct: 303 PYLMQQGFIQRTPRGRMACGKAYLHLGLTEP 333


>gi|81299645|ref|YP_399853.1| Holliday junction DNA helicase RuvB [Synechococcus elongatus PCC
           7942]
 gi|97190395|sp|Q31Q03|RUVB_SYNE7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|81168526|gb|ABB56866.1| Holliday junction DNA helicase subunit RuvB [Synechococcus
           elongatus PCC 7942]
          Length = 375

 Score =  360 bits (923), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 168/332 (50%), Positives = 222/332 (66%), Gaps = 2/332 (0%)

Query: 4   REGLLSRNVSQEDA--DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           ++ L+    + E++      +RP+ L ++ GQ E    L + I AAK+R E+LDH+L  G
Sbjct: 28  QDSLVRPQAAPEESQRPEDQIRPQRLADYIGQPELKDVLGIAIAAAKSRQESLDHLLLYG 87

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTT+A V+A E+GV  R T+ P + +  D+  LL NL+  DVLFIDEIHRL  + 
Sbjct: 88  PPGLGKTTMALVLATEMGVQCRITTAPALERPRDIVGLLVNLQPGDVLFIDEIHRLPKVT 147

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILYPAMEDF+LD+ +G+G SAR+  I L  FTL+ ATT++G LT+PL+DRFG+  RL 
Sbjct: 148 EEILYPAMEDFRLDITIGKGQSARTRSITLQPFTLVGATTQIGALTSPLRDRFGLVQRLR 207

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FYE+E L  IVQR A+L    +    A EIA RSRGTPRIA RLLRRVRD+A V     I
Sbjct: 208 FYEVEALTDIVQRTARLLNTPLDQAGAEEIAKRSRGTPRIANRLLRRVRDYAAVKAPGPI 267

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T  IA  AL    +D  G D  D R L+ +  NFGGGPVG+ET++A   E    +E++ E
Sbjct: 268 TGAIAATALELYNVDPCGLDWTDRRLLSHLIENFGGGPVGLETLAAATGEDAQTVEEVYE 327

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           PY++Q G++QRTPRGR+  P AW+HLG + P 
Sbjct: 328 PYLLQIGYLQRTPRGRVATPAAWRHLGYEPPQ 359


>gi|251780556|ref|ZP_04823476.1| Holliday junction DNA helicase RuvB [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243084871|gb|EES50761.1| Holliday junction DNA helicase RuvB [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 344

 Score =  360 bits (923), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 174/325 (53%), Positives = 236/325 (72%), Gaps = 1/325 (0%)

Query: 5   EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E +++     ED +  L LRP+ + E+ GQ +    L +FI+AAK R EALDHVL  GPP
Sbjct: 2   ERIVTPAEMFEDGNSELSLRPQKINEYIGQDKVKERLNIFIKAAKNRKEALDHVLLYGPP 61

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++A+E+  + + TSGP I +AGDLAA+LT L+D DVLFIDEIHRL+  VEE
Sbjct: 62  GLGKTTLANIIAKEMTGDLKITSGPAIERAGDLAAILTTLKDYDVLFIDEIHRLNRSVEE 121

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILYPAMED+ LD+++G+G +A+S++++L +FTLI ATTR+G+LT+PL+DRFG+   + +Y
Sbjct: 122 ILYPAMEDYALDIVIGKGAAAKSIRLDLPKFTLIGATTRIGMLTSPLRDRFGVLCAMEYY 181

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           +   LK IV R A + G  +T+E A EIA RSRGTPRIA RLL+RVRD++EV   K I+ 
Sbjct: 182 DENQLKEIVIRSAAVFGCKITEEGALEIASRSRGTPRIANRLLKRVRDYSEVKSNKVISL 241

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           + A  AL  L +D  GFD++D + L  I  NF GGPVGIET+S  + E    +ED+ EPY
Sbjct: 242 KEAREALELLEVDNQGFDKVDNKILEAIIDNFNGGPVGIETLSYFIGEELGTVEDVYEPY 301

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLG 328
           ++Q+GFI RTPRGR+    A++HLG
Sbjct: 302 LLQKGFIVRTPRGRIASDKAYKHLG 326


>gi|212692652|ref|ZP_03300780.1| hypothetical protein BACDOR_02149 [Bacteroides dorei DSM 17855]
 gi|237709370|ref|ZP_04539851.1| holliday junction DNA helicase RuvB [Bacteroides sp. 9_1_42FAA]
 gi|237725064|ref|ZP_04555545.1| holliday junction DNA helicase RuvB [Bacteroides sp. D4]
 gi|265754553|ref|ZP_06089605.1| Holliday junction DNA helicase RuvB [Bacteroides sp. 3_1_33FAA]
 gi|212664730|gb|EEB25302.1| hypothetical protein BACDOR_02149 [Bacteroides dorei DSM 17855]
 gi|229436802|gb|EEO46879.1| holliday junction DNA helicase RuvB [Bacteroides dorei 5_1_36/D4]
 gi|229456426|gb|EEO62147.1| holliday junction DNA helicase RuvB [Bacteroides sp. 9_1_42FAA]
 gi|263234667|gb|EEZ20235.1| Holliday junction DNA helicase RuvB [Bacteroides sp. 3_1_33FAA]
          Length = 342

 Score =  360 bits (923), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 172/329 (52%), Positives = 236/329 (71%), Gaps = 1/329 (0%)

Query: 1   MMDREGLLSRNVSQEDAD-ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M +   +  + ++ ++ D  + LRP   E+F+GQ +   NL++F++AA+ RAEALDHVL 
Sbjct: 1   MEENFDIREQQLTTKERDFENALRPLNFEDFSGQDKVVDNLRIFVKAARLRAEALDHVLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTL+ ++A ELGV F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS 
Sbjct: 61  HGPPGLGKTTLSNIIANELGVGFKVTSGPVLDKPGDLAGVLTSLEPNDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE LY AMED+++D+M+ +GPSARS+++ LS FTL+ ATTR GLLT PL+ RFGI + 
Sbjct: 121 VVEEYLYSAMEDYRIDIMIDKGPSARSIQLELSPFTLVGATTRSGLLTAPLRARFGINLH 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y+ + L +I++R A +  +    +AA EIA RSRGTPRIA  LLRRVRDFA+V  + 
Sbjct: 181 LEYYDDDVLTSIIRRSANILNVPCDMKAAGEIASRSRGTPRIANALLRRVRDFAQVKGSG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  EIA  AL  L ID+ G D++D + L  I   F GGPVG+ TI+  L E    IE++
Sbjct: 241 RIDVEIARFALEALNIDRYGLDEIDNKILCTIIDKFKGGPVGLTTIATALGEDAGTIEEV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
            EP++I++GF++RTPRGR +  +A+ HLG
Sbjct: 301 YEPFLIKEGFLKRTPRGREVTELAYIHLG 329


>gi|257870593|ref|ZP_05650246.1| holliday junction DNA helicase RuvB [Enterococcus gallinarum EG2]
 gi|257804757|gb|EEV33579.1| holliday junction DNA helicase RuvB [Enterococcus gallinarum EG2]
          Length = 336

 Score =  360 bits (923), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 167/330 (50%), Positives = 225/330 (68%), Gaps = 1/330 (0%)

Query: 2   MDREGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M  E ++S   ++ E+     LRP+ L ++ GQ +    L ++I+AAK R EALDHVL  
Sbjct: 1   MTDERIVSPETNETEELIEKSLRPQFLAQYIGQNKVKEELSIYIQAAKNREEALDHVLLY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTT+A V+A E+ VN ++TSGP I K GDL A+L  L+  DVLFIDEIHRL  +
Sbjct: 61  GPPGLGKTTMAMVIANEMAVNIKTTSGPAIEKPGDLIAILNELQPGDVLFIDEIHRLPRV 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            EE+LY AMEDF +D+MVG+G +A  V   L  FTL+ ATTR G+L+ PL+DRFGI   +
Sbjct: 121 AEEMLYSAMEDFFVDIMVGQGTTAHPVHFPLPPFTLVGATTRAGMLSAPLRDRFGIISHM 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +YE +DLK IV R A +    + +E A EIA RSRGTPRIA RLL+RVRDFA+V     
Sbjct: 181 EYYEDQDLKEIVLRSADIFQTEIVEEGAFEIARRSRGTPRIANRLLKRVRDFAQVQANGI 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I R+IAD ALL L +D  G D +D + +  +   +GGGPVG+ T+S  + E  + +ED+ 
Sbjct: 241 IDRQIADKALLLLQVDHAGLDYVDQKLIRTMIELYGGGPVGLSTLSVNIGEETETVEDMY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           EPY+IQ+GF++RTPRGR+   +A+ H G +
Sbjct: 301 EPYLIQRGFLKRTPRGRIATTLAYTHFGYE 330


>gi|163790794|ref|ZP_02185220.1| Holliday junction DNA helicase RuvB [Carnobacterium sp. AT7]
 gi|159873974|gb|EDP68052.1| Holliday junction DNA helicase RuvB [Carnobacterium sp. AT7]
          Length = 337

 Score =  360 bits (923), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 169/333 (50%), Positives = 227/333 (68%), Gaps = 2/333 (0%)

Query: 1   MMDREGLLSRNVS--QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M   E ++S + S  +E +    LRP  + E+ GQ +    L ++IEAAK R EALDHVL
Sbjct: 1   MDPEERIISGDSSTTEEISLEKSLRPHYMAEYIGQEKVKRELAIYIEAAKNREEALDHVL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTT+A V++ E+ V  R+TSGP I KAGDL ALL  LE  DVLFIDEIHR+ 
Sbjct: 61  LYGPPGLGKTTMAMVISNEMNVAIRTTSGPAIEKAGDLVALLNELEAGDVLFIDEIHRMP 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            +VEE+LY AMED+ +D++VG+GP+A  V   L  FTL+ ATTR GLL+ PL+DRFGI  
Sbjct: 121 RLVEEMLYSAMEDYFVDIIVGQGPTAHPVHFPLPPFTLVGATTRAGLLSAPLRDRFGIVS 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
            + +Y +E+L  IV R A +    + +  A EIA RSRGTPR+A RLL+RVRD+A+V   
Sbjct: 181 HMEYYTVEELSDIVLRSADIFNTEIIESGAIEIARRSRGTPRVANRLLKRVRDYAQVQSN 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             I +EIAD AL  L ID+ G D +D + L  +  N+ GGPVG+ TI+A + E  + IED
Sbjct: 241 GVIKKEIADEALAMLRIDQEGLDFVDQKLLKTMIENYNGGPVGLSTIAANIGEEIETIED 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           ++EP+++Q GF+QRTPRGR++  + + HLG  I
Sbjct: 301 MVEPFLLQAGFLQRTPRGRIVTHLGYTHLGYPI 333


>gi|150003857|ref|YP_001298601.1| Holliday junction DNA helicase RuvB [Bacteroides vulgatus ATCC
           8482]
 gi|254880917|ref|ZP_05253627.1| holliday junction DNA helicase RuvB [Bacteroides sp. 4_3_47FAA]
 gi|294775013|ref|ZP_06740542.1| Holliday junction DNA helicase RuvB [Bacteroides vulgatus PC510]
 gi|319639926|ref|ZP_07994654.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacteroides sp.
           3_1_40A]
 gi|166231464|sp|A6KZW5|RUVB_BACV8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|149932281|gb|ABR38979.1| Holliday junction DNA helicase RuvB [Bacteroides vulgatus ATCC
           8482]
 gi|254833710|gb|EET14019.1| holliday junction DNA helicase RuvB [Bacteroides sp. 4_3_47FAA]
 gi|294451057|gb|EFG19528.1| Holliday junction DNA helicase RuvB [Bacteroides vulgatus PC510]
 gi|317388465|gb|EFV69316.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacteroides sp.
           3_1_40A]
          Length = 342

 Score =  360 bits (923), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 172/329 (52%), Positives = 236/329 (71%), Gaps = 1/329 (0%)

Query: 1   MMDREGLLSRNVSQEDAD-ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M +   +  + ++ ++ D  + LRP   E+F+GQ +   NL++F++AA+ RAEALDHVL 
Sbjct: 1   MEENFDIREQQLTTKERDFENALRPLNFEDFSGQDKVVDNLRIFVKAARLRAEALDHVLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTL+ ++A ELGV F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS 
Sbjct: 61  HGPPGLGKTTLSNIIANELGVGFKVTSGPVLDKPGDLAGVLTSLEPNDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE LY AMED+++D+M+ +GPSARS+++ LS FTL+ ATTR GLLT PL+ RFGI + 
Sbjct: 121 VVEEYLYSAMEDYRIDIMIDKGPSARSIQLELSPFTLVGATTRSGLLTAPLRARFGINLH 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y+ + L +I++R A +  +    +AA EIA RSRGTPRIA  LLRRVRDFA+V  + 
Sbjct: 181 LEYYDDDVLTSIIRRSATILNVPCDVKAAGEIASRSRGTPRIANALLRRVRDFAQVKGSG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  EIA  AL  L ID+ G D++D + L  I   F GGPVG+ TI+  L E    IE++
Sbjct: 241 RIDVEIARFALEALNIDRYGLDEIDNKILCTIIDKFKGGPVGLTTIATALGEDAGTIEEV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
            EP++I++GF++RTPRGR +  +A+ HLG
Sbjct: 301 YEPFLIKEGFLKRTPRGREVTELAYMHLG 329


>gi|198282211|ref|YP_002218532.1| Holliday junction DNA helicase RuvB [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218666868|ref|YP_002424576.1| Holliday junction DNA helicase RuvB [Acidithiobacillus ferrooxidans
           ATCC 23270]
 gi|198246732|gb|ACH82325.1| Holliday junction DNA helicase RuvB [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218519081|gb|ACK79667.1| Holliday junction DNA helicase RuvB [Acidithiobacillus ferrooxidans
           ATCC 23270]
          Length = 340

 Score =  360 bits (923), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 178/332 (53%), Positives = 236/332 (71%), Gaps = 1/332 (0%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MDR G L+   +  DA    LRPR L E+ GQ +   +L ++I+AA+ R+EALDHVL  G
Sbjct: 1   MDR-GPLNPQEAHNDAVDHALRPRRLAEYLGQAKLRESLGLYIDAARGRSEALDHVLLFG 59

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A+E+G   + TSGPV+ K GDLAA+LTNL+  DVLF+DEIHRLS +V
Sbjct: 60  PPGLGKTTLAHIIAQEMGAGLKVTSGPVLDKPGDLAAILTNLQPHDVLFVDEIHRLSPVV 119

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILYPA+ED++LD+++GEGP+ARS+KI+L  FTLI ATTR GLLT+PL+DRFGI   L 
Sbjct: 120 EEILYPALEDYELDILIGEGPAARSIKISLPPFTLIGATTRAGLLTSPLRDRFGISFHLE 179

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY   +L  IV R A++ G     E A EIA R+RGTPRIA RLLRRVRD+A+V     I
Sbjct: 180 FYSDAELTQIVTRSARILGTPQALEGAQEIARRARGTPRIANRLLRRVRDYAQVRGNGEI 239

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
               A AAL  + +D+ GFD  D + L  +   F GGPVG+E+++A + E R  IED++E
Sbjct: 240 DMATAQAALTLMEVDRHGFDGQDRKLLQAVISRFAGGPVGVESLAAAIGEERGTIEDVLE 299

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           P++IQ+G++ RTPRGR    +++  LG+  P 
Sbjct: 300 PFLIQRGYLIRTPRGRCATELSYLALGLPAPR 331


>gi|319953595|ref|YP_004164862.1| holliday junction ATP-dependent DNA helicase ruvb [Cellulophaga
           algicola DSM 14237]
 gi|319422255|gb|ADV49364.1| Holliday junction ATP-dependent DNA helicase ruvB [Cellulophaga
           algicola DSM 14237]
          Length = 340

 Score =  360 bits (923), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 181/329 (55%), Positives = 234/329 (71%), Gaps = 1/329 (0%)

Query: 1   MMDREGLLSRNVSQEDAD-ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M +     + N + E+ D    LRP +  +FTGQ +   NLKVF+EAA  R EALDH LF
Sbjct: 1   MNEHLDPTNENFTPEEVDFDKALRPISFSDFTGQEQILENLKVFVEAANLRGEALDHTLF 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A ELGV  + TSGPV+ K GDLA LLTNL++RDVLFIDEIHRLS 
Sbjct: 61  HGPPGLGKTTLAHILANELGVGIKITSGPVLDKPGDLAGLLTNLDERDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           IVEE LY AMED+++D+M+  GP+ARSV+INL+ FTLI ATTR GLLT+P++ RFGI  R
Sbjct: 121 IVEEYLYSAMEDYKIDIMIETGPNARSVQINLNPFTLIGATTRSGLLTSPMRARFGIQSR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y  E L TIV R +++  + +T +AA EIA RSRGTPRI   LLRRVRDFA++    
Sbjct: 181 LQYYSSELLATIVTRSSEILKMPITADAAIEIAGRSRGTPRICNALLRRVRDFAQIKGNG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  EI+  AL  L +D  G D++D + L  +   F GGPVGI T++  +SE  + IE++
Sbjct: 241 KIDLEISRFALKALNVDAHGLDEMDNKILLTLIDKFKGGPVGITTLATAVSESAETIEEV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
            EP++IQ+GFI RTPRGR +  +A++HLG
Sbjct: 301 YEPFLIQEGFIMRTPRGREVTELAYKHLG 329


>gi|78357365|ref|YP_388814.1| Holliday junction DNA helicase RuvB [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|97190034|sp|Q30YX7|RUVB_DESDG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|78219770|gb|ABB39119.1| Holliday junction DNA helicase subunit RuvB [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 321

 Score =  360 bits (923), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 172/329 (52%), Positives = 245/329 (74%), Gaps = 11/329 (3%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MM++E +              +RPRTL++F GQ +  +NL+V+++AA+ R +A+DH LF 
Sbjct: 2   MMEQECV-----------DDSIRPRTLDDFIGQEDLRANLRVYLQAARGRGQAMDHTLFY 50

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           G PGLGKTTLAQ++A E+GVN   TSGPV+ ++GDLAA+LTNL   D+LF+DEIHR+ + 
Sbjct: 51  GNPGLGKTTLAQIMASEMGVNMVCTSGPVLERSGDLAAILTNLGKGDLLFVDEIHRMPVA 110

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDF+LDL++G+GP AR+VKI+L  FTL+ ATTR+GLL++PL+DRFGI  RL
Sbjct: 111 VEEVLYPAMEDFKLDLVIGQGPGARTVKIDLEPFTLVGATTRIGLLSSPLRDRFGIISRL 170

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY   +L  IV+R A + G+++T++ A EI  RSRGTPRIA RLLRRVRDFA V ++  
Sbjct: 171 EFYTPAELACIVKRTAGIMGVSLTEDGAVEIGRRSRGTPRIANRLLRRVRDFASVQNSAA 230

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +T  +A  AL R+ +D++G DQ+D + L+++  +F GGPVG++T++   SE    IED+ 
Sbjct: 231 VTAALASDALARMDVDELGLDQMDRKLLSVLIEHFAGGPVGVKTLAVACSEEVRTIEDIY 290

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           EPY+IQ GF++RTPRGR+    A++H+ +
Sbjct: 291 EPYLIQCGFLKRTPRGRMATAKAYRHMNL 319


>gi|120434537|ref|YP_860232.1| Holliday junction DNA helicase RuvB [Gramella forsetii KT0803]
 gi|171460822|sp|A0LXR1|RUVB_GRAFK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|117576687|emb|CAL65156.1| Holliday junction ATP-dependent DNA helicase RuvB [Gramella
           forsetii KT0803]
          Length = 343

 Score =  360 bits (923), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 178/330 (53%), Positives = 231/330 (70%), Gaps = 2/330 (0%)

Query: 1   MMDRE-GLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           MM+        N S E+ D+   LRP + ++F GQ +   NL++F++AA  R EALDH L
Sbjct: 1   MMNENLDATGENFSPEEFDVERALRPLSFDDFAGQEQVLENLQIFVQAANLRGEALDHTL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
           F GPPGLGKTTLA ++A EL V  + TSGPV+ K GDLA LLTNL++RD+LFIDEIHRLS
Sbjct: 61  FHGPPGLGKTTLAHILANELNVGIKITSGPVLDKPGDLAGLLTNLDERDILFIDEIHRLS 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            IVEE LY AMED+++D+M+  GP+AR+V+INL+ FTLI ATTR GLLT P++ RFGI  
Sbjct: 121 PIVEEYLYSAMEDYRIDIMIETGPNARTVQINLNPFTLIGATTRSGLLTAPMRARFGISS 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           RL +Y  E L  IV+R + +  + +T +AA EIA RSRGTPRIA  LLRRVRDFA++   
Sbjct: 181 RLQYYSTELLSGIVERSSDILKVPITQDAAIEIAGRSRGTPRIANALLRRVRDFAQIKGN 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             I  EIA   L  L +D  G D++D + L  I   F GGPVGI T++  +SE  + IE+
Sbjct: 241 GKIDIEIAKFGLKALNVDAHGLDEMDNKILATIIDKFKGGPVGITTLATAVSESAETIEE 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
           + EP++IQQGFI RTPRGR +   A++HLG
Sbjct: 301 VYEPFLIQQGFIYRTPRGREVTEHAYRHLG 330


>gi|323343744|ref|ZP_08083971.1| crossover junction ATP-dependent DNA helicase RuvB [Prevotella
           oralis ATCC 33269]
 gi|323095563|gb|EFZ38137.1| crossover junction ATP-dependent DNA helicase RuvB [Prevotella
           oralis ATCC 33269]
          Length = 344

 Score =  359 bits (922), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 171/332 (51%), Positives = 230/332 (69%), Gaps = 1/332 (0%)

Query: 1   MMDREGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M +   +    ++  E    + LRP    +F+GQ     NL+VF+EAAK R E LDH L 
Sbjct: 1   MSEDFDIREETLTTAEREFENALRPLKFTDFSGQKNVVENLEVFVEAAKYRGEPLDHTLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTL+ ++A ELGV F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS 
Sbjct: 61  HGPPGLGKTTLSNIIANELGVGFKITSGPVLDKPGDLAGILTSLEPNDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE LY AMED+++D+M+ +GPSARS++I+L+ FTL+ ATTR GLLT PL+ RFGI + 
Sbjct: 121 VVEEYLYSAMEDYRIDIMIDKGPSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGINLH 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +YE + L  I++R A +  + + D+AA EI+ RSRGTPRIA  LLRRVRDFA+V  + 
Sbjct: 181 LEYYEPDTLTKILKRSAGILKVPIDDDAAIEISRRSRGTPRIANALLRRVRDFAQVKGSG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  +IA  AL  L ID+ G D++D + L  I   F GGPVGI TI+  + E    +E++
Sbjct: 241 RINTDIARFALKALNIDRYGLDEIDNKILLTIIDKFRGGPVGISTIATAIGEDTGTVEEV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
            EP++I +GFI+RTPRGR+   +A++HLG   
Sbjct: 301 YEPFLIMEGFIKRTPRGRMATALAFEHLGRTP 332


>gi|18310929|ref|NP_562863.1| Holliday junction DNA helicase B [Clostridium perfringens str. 13]
 gi|20140041|sp|Q8XJ14|RUVB_CLOPE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|18145611|dbj|BAB81653.1| holliday junction DNA helicase [Clostridium perfringens str. 13]
          Length = 346

 Score =  359 bits (922), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 171/327 (52%), Positives = 232/327 (70%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M    + S  +  +  +   LRP  + E+ GQ +    L +FI+AA+ R EALDHV+  G
Sbjct: 1   MSERLVTSNEIGIDSTNEYSLRPEKINEYIGQDKVKERLNIFIKAAQRREEALDHVILYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+G N + TSGP I +AGDLAA+LT L   DVLFIDEIHRL+  V
Sbjct: 61  PPGLGKTTLANIIANEMGGNLKITSGPAIERAGDLAAILTTLNTNDVLFIDEIHRLNRSV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILYPAMED+ LD+++G+G +++S++++L +FTLI ATTR+G+L++PL+DR G+   + 
Sbjct: 121 EEILYPAMEDYVLDIIIGKGAASKSIRLDLPKFTLIGATTRIGMLSSPLRDRLGVLCSME 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y  E LK I+ R A++ G  +T+E A EIA RSRGTPRIA RLL+RVRDFAEV +   I
Sbjct: 181 YYTDEQLKEIIIRSAEILGCHITEEGAFEIAKRSRGTPRIANRLLKRVRDFAEVLYDNEI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T E A  +L  L +D  GFD++D + L  I  NF GGPVGIET++  + E  D IED+ E
Sbjct: 241 TEEAAKKSLEILEVDGEGFDRIDNKILEAIIDNFNGGPVGIETLAYFVGEELDTIEDVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLG 328
           PY++Q+GFI RTPRGR+    A++HLG
Sbjct: 301 PYLLQKGFIVRTPRGRMATDKAYKHLG 327


>gi|258545751|ref|ZP_05705985.1| Holliday junction DNA helicase RuvB [Cardiobacterium hominis ATCC
           15826]
 gi|258518996|gb|EEV87855.1| Holliday junction DNA helicase RuvB [Cardiobacterium hominis ATCC
           15826]
          Length = 336

 Score =  359 bits (922), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 185/335 (55%), Positives = 244/335 (72%), Gaps = 2/335 (0%)

Query: 1   MMDREGLLSRNV--SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M++ + L+  N   + E A    +RP+ L E+ GQ    + +++FI+AA AR EALDHVL
Sbjct: 1   MIESDRLIHGNSLGNDEQAVERAVRPKRLAEYIGQSALKAQMEIFIQAALARQEALDHVL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTT+A ++A ELGVN R TSGP++ K GDLAA+LTNLE  DVLFIDEIHRLS
Sbjct: 61  LFGPPGLGKTTMANIIAAELGVNLRQTSGPILDKGGDLAAMLTNLEAHDVLFIDEIHRLS 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
             VEE+LY AMED+++D+M+GEGP+ARS+ + +  FTL+ ATTR GLL+ PL+DRFGI  
Sbjct: 121 PAVEEVLYSAMEDYRIDIMIGEGPAARSIILPIKPFTLVGATTRSGLLSAPLRDRFGISQ 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
            L FY   +L  +V R  +L G+ +  + A EI  R+RGTPRIA RLLRRVRD+A+V  +
Sbjct: 181 HLQFYSESELTAVVLRVGELLGVQMERDGAIEIGKRARGTPRIANRLLRRVRDYADVRGS 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             ITR IAD AL  LAID  GFD LD R L +I  +FGGGPVG++T++A + E R  +ED
Sbjct: 241 GIITRAIADEALELLAIDHCGFDNLDRRLLHIIIEHFGGGPVGLDTLAASVGEERGTLED 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           ++EPY+IQQG++QRTPRGR+    A+ HLGI++P 
Sbjct: 301 VVEPYLIQQGYLQRTPRGRVATARAYAHLGIEMPK 335


>gi|121998992|ref|YP_001003779.1| Holliday junction DNA helicase RuvB [Halorhodospira halophila SL1]
 gi|171769516|sp|A1WZ65|RUVB_HALHL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|121590397|gb|ABM62977.1| Holliday junction DNA helicase subunit RuvB [Halorhodospira
           halophila SL1]
          Length = 346

 Score =  359 bits (922), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 170/327 (51%), Positives = 234/327 (71%), Gaps = 1/327 (0%)

Query: 5   EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E ++    + ++A +   LRP +L+E+ GQ      L++FI AA+ R E LDH L  GPP
Sbjct: 9   ERIIDAAGTGDEAALERALRPVSLDEYVGQTGVREQLEIFIRAARGRDEPLDHTLLFGPP 68

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++A E+G + R +SGPV+ + GDLAA+LTNLE  DVLFIDEIHRLS +VEE
Sbjct: 69  GLGKTTLANIIATEMGASLRQSSGPVLDRPGDLAAILTNLEPGDVLFIDEIHRLSSVVEE 128

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LYPAMEDF++D+++GEGP+ARS+K++L  FTL+ ATTR GLLT+PL+DRFGI  RL +Y
Sbjct: 129 VLYPAMEDFRIDIVIGEGPAARSIKLDLPPFTLVGATTRAGLLTSPLRDRFGIVQRLAYY 188

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            +++L  IVQR A   G++     A EIA R+RGTPR+A RLLRRVRDFAEV     IT 
Sbjct: 189 PVDELTRIVQRSAGRLGVSTEAHGAAEIARRARGTPRVANRLLRRVRDFAEVRADGRITE 248

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           ++A  A+  L +D+ G D+ D R L  +   FGGGPVG++ ++  + E R  +ED++EPY
Sbjct: 249 QVAADAMELLDVDRNGLDEQDRRLLEAVVHKFGGGPVGLDNLATAIGEERGTLEDVVEPY 308

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGID 330
           +IQ+G++ RTPRGR+    A+  LG+ 
Sbjct: 309 LIQEGYLMRTPRGRVATEHAYTLLGVP 335


>gi|325956130|ref|YP_004286740.1| Holliday junction DNA helicase RuvB [Lactobacillus acidophilus
           30SC]
 gi|325332695|gb|ADZ06603.1| Holliday junction DNA helicase RuvB [Lactobacillus acidophilus
           30SC]
 gi|327182938|gb|AEA31385.1| Holliday junction DNA helicase RuvB [Lactobacillus amylovorus GRL
           1118]
          Length = 338

 Score =  359 bits (922), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 168/335 (50%), Positives = 230/335 (68%), Gaps = 3/335 (0%)

Query: 1   MMDREGLLSR---NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M + +  ++      S+E+A    LRP+TL+++ GQ      + ++I+AAK R EALDHV
Sbjct: 1   MAENDDAVTSGQVEGSEEEAMELSLRPQTLDQYLGQERVKKEMSIYIKAAKQRDEALDHV 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTLA V+A ELGV+ +STSGP I KAGDL ALL++L+  DVLFIDEIHRL
Sbjct: 61  LLYGPPGLGKTTLAFVIANELGVHLKSTSGPAIEKAGDLVALLSDLDPGDVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           +  VEE+LY AMED+ +D+++GEG +  +V + L  FTLI ATT  G L+ PL+DRFGI 
Sbjct: 121 AKPVEEVLYSAMEDYYIDIVIGEGQTTHAVHVPLPPFTLIGATTLAGQLSAPLRDRFGIV 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
             + +Y +++L+ IVQR + +   ++  EAA E+A RSRGTPR+A RLL+RVRDFAEV  
Sbjct: 181 EHMQYYTVDELEKIVQRSSDVFHTSIAPEAAHELARRSRGTPRVANRLLKRVRDFAEVKG 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
            KTI+    + AL +L +D  G DQ D + L  +   + GGPVGI T++A + E  + IE
Sbjct: 241 EKTISLATTENALKQLQVDDEGLDQTDRKLLRTMIEGYNGGPVGIRTLAANIGEDMETIE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
            L EPY++Q GFI  TPRGR++   A+  LG+ IP
Sbjct: 301 SLYEPYLLQHGFILLTPRGRMVTDKAYLQLGLPIP 335


>gi|315037645|ref|YP_004031213.1| Holliday junction DNA helicase RuvB [Lactobacillus amylovorus GRL
           1112]
 gi|312275778|gb|ADQ58418.1| Holliday junction DNA helicase RuvB [Lactobacillus amylovorus GRL
           1112]
          Length = 338

 Score =  359 bits (922), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 169/335 (50%), Positives = 230/335 (68%), Gaps = 3/335 (0%)

Query: 1   MMDREGLLSR---NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M + +  ++      S+E+A    LRP+TL+++ GQ      + ++I+AAK R EALDHV
Sbjct: 1   MAENDDAVTSGQVEGSEEEAMELSLRPQTLDQYLGQERVKKEMSIYIKAAKKRDEALDHV 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTLA V+A ELGV+ +STSGP I KAGDL ALL++L+  DVLFIDEIHRL
Sbjct: 61  LLYGPPGLGKTTLAFVIANELGVHLKSTSGPAIEKAGDLVALLSDLDPGDVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           +  VEEILY AMED+ +D+++GEG +  +V + L  FTLI ATT  G L+ PL+DRFGI 
Sbjct: 121 AKPVEEILYSAMEDYYIDIVIGEGQTTHAVHVPLPPFTLIGATTLAGQLSAPLRDRFGIV 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
             + +Y +++L+ IVQR + +   ++  EAA E+A RSRGTPR+A RLL+RVRDFAEV  
Sbjct: 181 EHMQYYTVDELEKIVQRSSDVFHTSIAPEAAHELARRSRGTPRVANRLLKRVRDFAEVKG 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
            KTI+    + AL +L +D  G DQ D + L  +   + GGPVGI T++A + E  + IE
Sbjct: 241 EKTISLATTENALKQLQVDDEGLDQTDRKLLRTMIEGYNGGPVGIRTLAANIGEDMETIE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
            L EPY++Q GFI  TPRGR++   A+  LG+ IP
Sbjct: 301 SLYEPYLLQHGFILLTPRGRMVTDKAYLQLGLPIP 335


>gi|312131534|ref|YP_003998874.1| holliday junction DNA helicase ruvb [Leadbetterella byssophila DSM
           17132]
 gi|311908080|gb|ADQ18521.1| Holliday junction DNA helicase RuvB [Leadbetterella byssophila DSM
           17132]
          Length = 339

 Score =  359 bits (922), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 174/334 (52%), Positives = 232/334 (69%), Gaps = 1/334 (0%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M ++ L   + S +D ++   LRP + ++F GQ +   NLKVF+ AAK R+EALDHVL  
Sbjct: 1   MRQDFLKGDSESPKDKELEKALRPLSFDDFAGQDKILENLKVFVLAAKMRSEALDHVLLH 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTL+ ++A ELG N + TSGPV+ K  DLA LLT+LE  DVLFIDEIHRL+ I
Sbjct: 61  GPPGLGKTTLSHIIANELGANLKITSGPVLDKPSDLAGLLTSLEQNDVLFIDEIHRLNPI 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE LY AMED+++D+M+  GP+ARSV+I L+ FTLI ATTR GLLT+PL+ RFGI  RL
Sbjct: 121 VEEYLYSAMEDYKIDIMLDSGPNARSVQIGLNPFTLIGATTRSGLLTSPLRARFGINSRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y+ + L  I+ R A +    + ++ A EIA RSRGTPRIA  LLRR RDFA+V     
Sbjct: 181 EYYDAQLLSKILVRSASILQTPIDEDGAYEIARRSRGTPRIANNLLRRTRDFAQVKGEGV 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           IT EIA  AL  L +D+ G D++D R L+ I   F GGPVG+ TI+  + E  + IE++ 
Sbjct: 241 ITVEIAKMALAALDVDQDGLDEMDNRILSTIIEKFKGGPVGLGTIATAVGEEAETIEEVY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           EP++IQ+GF++RT RGR     A++HL +   +R
Sbjct: 301 EPFLIQEGFLKRTARGREATEKAYKHLNLVPKYR 334


>gi|304383686|ref|ZP_07366145.1| crossover junction ATP-dependent DNA helicase RuvB [Prevotella
           marshii DSM 16973]
 gi|304335210|gb|EFM01481.1| crossover junction ATP-dependent DNA helicase RuvB [Prevotella
           marshii DSM 16973]
          Length = 360

 Score =  359 bits (922), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 167/332 (50%), Positives = 227/332 (68%), Gaps = 1/332 (0%)

Query: 1   MMDREGLLSRNVSQEDAD-ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M D   +     +  + D  + LRP +  +F+GQ +  +NL+VF+EAAK R E LDH L 
Sbjct: 16  MTDDFDIREERTTAGEKDFENALRPLSFGDFSGQQKVVNNLEVFVEAAKYRGEPLDHTLL 75

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTL+ ++A ELG   + TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS 
Sbjct: 76  HGPPGLGKTTLSNIIANELGSGLKITSGPVLDKPGDLAGILTSLEKNDVLFIDEIHRLSP 135

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE LY AMED+++D+M+ +GPSARS++I+L+ FTL+ ATTR GLLT PL+ RF I + 
Sbjct: 136 VVEEYLYSAMEDYRIDIMIDKGPSARSIQIDLNPFTLVGATTRSGLLTAPLRARFTINLH 195

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y+ + L  I+ R A + G+ +  +AA EIA RSRGTPRIA  LLRRVRDFA+V    
Sbjct: 196 LEYYDADTLTQIILRSAGILGVPIAPDAAVEIAGRSRGTPRIANGLLRRVRDFAQVKGDG 255

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I   I   AL  L ID+ G D++D + L  I   F GGPVG+ TI+  + E    +E++
Sbjct: 256 RIDIGITRLALSALNIDQYGLDEIDNKILLTIIDKFKGGPVGVSTIATAIGEDSGTVEEV 315

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
            EP++I +GFI+RTPRGR++  +A++H G D 
Sbjct: 316 YEPFLIMEGFIKRTPRGRVVTELAYRHFGRDP 347


>gi|58336748|ref|YP_193333.1| Holliday junction DNA helicase RuvB [Lactobacillus acidophilus
           NCFM]
 gi|227903309|ref|ZP_04021114.1| Holliday junction DNA helicase B [Lactobacillus acidophilus ATCC
           4796]
 gi|81311520|sp|Q5FLX2|RUVB_LACAC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|58254065|gb|AAV42302.1| helicase Holliday junction [Lactobacillus acidophilus NCFM]
 gi|227868938|gb|EEJ76359.1| Holliday junction DNA helicase B [Lactobacillus acidophilus ATCC
           4796]
          Length = 349

 Score =  359 bits (922), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 164/323 (50%), Positives = 223/323 (69%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
              +E+     LRP+TL+++ GQ      + ++I+AA+ R EALDHVL  GPPGLGKTTL
Sbjct: 25  ENPEEEQMELSLRPQTLDQYLGQKRVKKEMSIYIKAARQRDEALDHVLLYGPPGLGKTTL 84

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           A V+A ELGV+ +STSGP I KAGDL ALL++L+  DVLFIDEIHRL+  VEE+LY AME
Sbjct: 85  AFVIANELGVHLKSTSGPAIEKAGDLVALLSDLDPGDVLFIDEIHRLAKPVEEVLYSAME 144

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           D+ +D+++GEG +  +V + L  FTLI ATT  G L+ PL+DRFGI   + +Y +++L+ 
Sbjct: 145 DYYIDIVIGEGQTTHAVHVPLPPFTLIGATTLAGQLSAPLRDRFGIVEHMQYYTVDELEK 204

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           IVQR + +   ++  EAA E+A RSRGTPR+A RLL+RVRDFAEV   KTI+      AL
Sbjct: 205 IVQRSSDVFHTSIAPEAAHELARRSRGTPRVANRLLKRVRDFAEVKGEKTISLATTSDAL 264

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
            +L +D  G DQ D + L  +   + GGPVGI T++A + E  + IE L EPY++Q GFI
Sbjct: 265 KQLQVDSEGLDQTDRKLLRTMIEGYNGGPVGIRTLAANIGEDMETIESLYEPYLLQNGFI 324

Query: 311 QRTPRGRLLMPIAWQHLGIDIPH 333
             TPRGR++   A+  LG+ IP+
Sbjct: 325 LLTPRGRMVTDKAYLQLGLPIPN 347


>gi|282882987|ref|ZP_06291591.1| holliday junction DNA helicase RuvB [Peptoniphilus lacrimalis
           315-B]
 gi|281297194|gb|EFA89686.1| holliday junction DNA helicase RuvB [Peptoniphilus lacrimalis
           315-B]
          Length = 334

 Score =  359 bits (922), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 176/330 (53%), Positives = 234/330 (70%), Gaps = 1/330 (0%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD E ++  N S ED     LRP+ L ++ GQ +  + LK+FI+AAK R E LDH L  G
Sbjct: 1   MD-ERIIDANFSVEDKQEINLRPKWLLDYIGQDKVINKLKIFIKAAKNRKEPLDHTLLSG 59

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+GVN + TSGP I + GDLA++LTNL++ DVLFIDEIHRL+  V
Sbjct: 60  PPGLGKTTLAGIIANEMGVNIKVTSGPAIERQGDLASILTNLKEDDVLFIDEIHRLNKSV 119

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILYPAMED+ LD+++G+GPSARS++++L++FTLI ATTR G+LT+PL+DRFG+ + + 
Sbjct: 120 EEILYPAMEDYALDIIIGKGPSARSIRLDLAKFTLIGATTRSGMLTSPLRDRFGVLLNME 179

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
            Y I+ L  IV   A++  + +  E A EIA RSRGTPRIA RLL+RVRD+AEV     I
Sbjct: 180 LYSIDALTKIVISSAEILNIPIEKEGALEIAKRSRGTPRIANRLLKRVRDYAEVVERGVI 239

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T ++A   L  L IDK G D +D + +  +  NF G PVGI+ ISA + E R  +ED+ E
Sbjct: 240 TEKVAVKGLNLLEIDKYGLDNIDRKIILTMIENFVGRPVGIDAISASIGEDRITVEDVYE 299

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           PY++Q GFI RTPRGRL    A+ H G++ 
Sbjct: 300 PYLMQIGFIVRTPRGRLATKKAYDHFGLEY 329


>gi|257866611|ref|ZP_05646264.1| holliday junction DNA helicase RuvB [Enterococcus casseliflavus
           EC30]
 gi|257872873|ref|ZP_05652526.1| holliday junction DNA helicase RuvB [Enterococcus casseliflavus
           EC10]
 gi|257876216|ref|ZP_05655869.1| holliday junction DNA helicase RuvB [Enterococcus casseliflavus
           EC20]
 gi|257800569|gb|EEV29597.1| holliday junction DNA helicase RuvB [Enterococcus casseliflavus
           EC30]
 gi|257807037|gb|EEV35859.1| holliday junction DNA helicase RuvB [Enterococcus casseliflavus
           EC10]
 gi|257810382|gb|EEV39202.1| holliday junction DNA helicase RuvB [Enterococcus casseliflavus
           EC20]
          Length = 333

 Score =  359 bits (922), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 166/333 (49%), Positives = 222/333 (66%), Gaps = 2/333 (0%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD   +   +  QE+     LRP+TL ++ GQ +    L ++I+AAK R EALDHVL  G
Sbjct: 1   MDERIVSPESTEQEEIIEKSLRPQTLAQYIGQDKVKQELSIYIQAAKNREEALDHVLLYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTT+A V+A E+ V  ++TSGP I K GDL A+L  L+  DVLFIDEIHRL  + 
Sbjct: 61  PPGLGKTTMAMVIANEMQVQIKTTSGPAIEKPGDLIAILNELQPGDVLFIDEIHRLPRVA 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMEDF +D+MVG+G +A  V   L  FTL+ ATTR G+L+ PL+DRFGI   + 
Sbjct: 121 EEMLYSAMEDFYVDIMVGQGTTAHPVHFPLPPFTLVGATTRAGMLSAPLRDRFGIISHMQ 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +YE  DLK IVQR A +    + +E A EIA RSRGTPRIA RLL+RVRD+A+V     I
Sbjct: 181 YYEDHDLKEIVQRTASIFETDIVEEGAIEIARRSRGTPRIANRLLKRVRDYAQVQADGLI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
            R +AD AL  LA+D  G D +D + +  +   + GGPVG+ TI+  + E  + +ED+ E
Sbjct: 241 DRTVADQALALLAVDHAGLDYIDQKLIRTMIELYQGGPVGLSTIAVNIGEETETVEDMYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           P++IQ+GF++RT RGR+  P+A+ H G   P R
Sbjct: 301 PFLIQKGFLKRTSRGRIATPLAYDHFG--YPQR 331


>gi|302384290|ref|YP_003820113.1| Holliday junction DNA helicase RuvB [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302194918|gb|ADL02490.1| Holliday junction DNA helicase RuvB [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 342

 Score =  359 bits (922), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 205/333 (61%), Positives = 253/333 (75%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M  + ++S   +  +A    LRP+TL EF GQ  A  NLK+FI+AA+ R EALDHVL  G
Sbjct: 1   MSDDRIISPEPAPGEAYDRALRPQTLSEFVGQEAAKGNLKIFIDAARGRGEALDHVLLFG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLAQ+VARELGV FR+TSGP++AKAGDLAA+LTNLE RDVLFIDEIHRL+  V
Sbjct: 61  PPGLGKTTLAQIVARELGVGFRATSGPILAKAGDLAAILTNLEPRDVLFIDEIHRLAPTV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILYPAMED  LDL++GEGPSARSV+I+L+ FTL+ ATTR GLL  PL+DRFGIP+RL 
Sbjct: 121 EEILYPAMEDHVLDLIIGEGPSARSVRIDLAPFTLVGATTRAGLLATPLRDRFGIPLRLE 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY   +L  ++   A+  G  + DE A EIA RSRGTPR+AGRLLRRVRDFAE   A  I
Sbjct: 181 FYTPAELVRVITGAARKMGAPINDEGAGEIASRSRGTPRVAGRLLRRVRDFAEAEGAAVI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
            R +A  AL RL ID+ G D  D R+L  +  N+GGGPVG++T++A ++E RDA+ED+IE
Sbjct: 241 NRIVAARALSRLEIDEAGLDANDRRFLKALIENYGGGPVGMDTLAAAIAEARDAVEDVIE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           PY++QQGFIQRTPRGR+    A+ HLG+  P +
Sbjct: 301 PYLLQQGFIQRTPRGRMACAKAYAHLGLSEPPK 333


>gi|149276279|ref|ZP_01882423.1| Holliday junction DNA helicase B [Pedobacter sp. BAL39]
 gi|149232799|gb|EDM38174.1| Holliday junction DNA helicase B [Pedobacter sp. BAL39]
          Length = 362

 Score =  359 bits (921), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 174/336 (51%), Positives = 232/336 (69%), Gaps = 2/336 (0%)

Query: 1   MMDRE-GLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           MM+      S N+S  + DI   LRP+  E+FTGQ +   NLK+F++AAK R E LDHVL
Sbjct: 22  MMNENLDPSSENLSPVERDIEKVLRPQAFEDFTGQDKIMENLKIFVKAAKLRGEPLDHVL 81

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTL+ ++A E+ V  + TSGPV+ K GDLA LLT L+  D+LFIDEIHRLS
Sbjct: 82  LHGPPGLGKTTLSYIIANEMSVGIKVTSGPVLDKPGDLAGLLTGLDTGDILFIDEIHRLS 141

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            +VEE LY AMEDF++D+M+  GP+ARSV+I+L+ FTL+ ATTR GLLT PL+ RFGI  
Sbjct: 142 PLVEEYLYSAMEDFKIDIMLESGPNARSVQISLNPFTLVGATTRSGLLTAPLRARFGINS 201

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           RL +Y+ + L TIV R +++    +T+E A EIA RSRGTPRIA  LLRR RDFA++   
Sbjct: 202 RLAYYDAKLLTTIVLRSSQILKTPITEEGAYEIARRSRGTPRIANALLRRTRDFAQIKGD 261

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
            TI  EI+  AL  L +D+ G D++D + L  I   F GGPVG++TI+  + E    IE+
Sbjct: 262 GTINTEISRYALKALNVDEHGLDEMDNKILVTIIDKFKGGPVGLKTIATAVGEDEGTIEE 321

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           + EP++IQ+GF+ RT RGR     A++HL  + P +
Sbjct: 322 VYEPFLIQEGFLMRTSRGREATEAAYKHLQKNFPGQ 357


>gi|257899428|ref|ZP_05679081.1| holliday junction DNA helicase RuvB [Enterococcus faecium Com15]
 gi|293570774|ref|ZP_06681824.1| holliday junction DNA helicase RuvB [Enterococcus faecium E980]
 gi|257837340|gb|EEV62414.1| holliday junction DNA helicase RuvB [Enterococcus faecium Com15]
 gi|291609246|gb|EFF38518.1| holliday junction DNA helicase RuvB [Enterococcus faecium E980]
          Length = 333

 Score =  359 bits (921), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 169/331 (51%), Positives = 226/331 (68%), Gaps = 1/331 (0%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M  E LLS    + +  +   LRP+ L ++ GQ +    L+++IEAA+ R E LDHVL  
Sbjct: 1   MTDEYLLSPETGENELSLEKSLRPQLLSQYIGQRKVKQELQIYIEAARNREEPLDHVLLY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTT+A V+A E+ VN R+TSGP I + GDL A+L  LE  DVLFIDEIHRL  +
Sbjct: 61  GPPGLGKTTMAMVIANEMTVNIRTTSGPAIERPGDLVAILNELEAGDVLFIDEIHRLPRV 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LY AMEDF +D+MVG+GP+A  V   L  FTLI ATTR G+L+ PL+DRFGI   +
Sbjct: 121 VEEMLYSAMEDFYVDIMVGQGPTAHPVHFPLPPFTLIGATTRAGMLSAPLRDRFGIISHM 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y+ ++L+ IV R + +    + +E A EIA RSRGTPRIA RLL+RVRDFA+V     
Sbjct: 181 EYYDEQELQEIVLRSSDIFQTEIIEEGALEIARRSRGTPRIANRLLKRVRDFAQVQGDGK 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I R IAD AL  L +D+ G D +D + L  +   +GGGPVG+ T+S  + E R+ +ED+ 
Sbjct: 241 IDRPIADQALTLLQVDQAGLDYVDQKLLRTMIELYGGGPVGLSTLSVNIGEERETVEDMY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           EPY+IQ+GF++RTPRGR+    A++H G D 
Sbjct: 301 EPYLIQKGFLKRTPRGRMATAYAYEHFGYDY 331


>gi|256820535|ref|YP_003141814.1| Holliday junction DNA helicase RuvB [Capnocytophaga ochracea DSM
           7271]
 gi|256582118|gb|ACU93253.1| Holliday junction DNA helicase RuvB [Capnocytophaga ochracea DSM
           7271]
          Length = 355

 Score =  359 bits (921), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 174/322 (54%), Positives = 227/322 (70%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           +QE      LRP + ++F GQ     NLKVF++AA  R EALDH LF GPPGLGKTTLA 
Sbjct: 28  AQELDIERALRPLSFDDFAGQEAVLENLKVFVKAANMRHEALDHTLFHGPPGLGKTTLAH 87

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++A ELGV  + TSGPV+ K GDLA LLTNL++RDVLFIDEIHRLS +VEE LY AMED+
Sbjct: 88  ILANELGVGIKITSGPVLDKPGDLAGLLTNLQERDVLFIDEIHRLSPVVEEYLYSAMEDY 147

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           ++D+M+  GP+AR+V+INL+ FTLI ATTR GLLT P++ RFGI  RL +Y  E L  IV
Sbjct: 148 KIDIMIESGPNARTVQINLNPFTLIGATTRSGLLTAPMRARFGIQSRLQYYSTELLADIV 207

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           +R A +  + ++ EAA E+A RSRGTPRIA  LLRR+RDFA++     I   I    L  
Sbjct: 208 RRSASILKVPISMEAAIELASRSRGTPRIANALLRRIRDFAQIKGNGEINIAITRFGLKA 267

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D  G D++D + L+ +   F GGPVGI T++  +SE  + IE++ EP++IQ+GFI R
Sbjct: 268 LNVDAHGLDEMDNKILSTLIDKFKGGPVGITTLATAVSESAETIEEVYEPFLIQEGFIVR 327

Query: 313 TPRGRLLMPIAWQHLGIDIPHR 334
           TPRGR +  +A++HLG   P R
Sbjct: 328 TPRGREVTDLAYKHLGRVNPAR 349


>gi|256545113|ref|ZP_05472479.1| Holliday junction DNA helicase RuvB [Anaerococcus vaginalis ATCC
           51170]
 gi|256399154|gb|EEU12765.1| Holliday junction DNA helicase RuvB [Anaerococcus vaginalis ATCC
           51170]
          Length = 336

 Score =  359 bits (921), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 173/336 (51%), Positives = 236/336 (70%), Gaps = 2/336 (0%)

Query: 1   MMDR-EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M D+ E ++  N    D    + +RP+ L+++ GQ +A   LK+FIE++K R EALDHVL
Sbjct: 1   MYDQNERIVGSNEQINDKYKEMTIRPKWLKDYIGQDKAKEKLKIFIESSKKRQEALDHVL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTL+ ++A ELGVN R TSGP I +  DLA++LTNL+  DVLFIDEIHR++
Sbjct: 61  LQGPPGLGKTTLSNIIANELGVNIRITSGPAIERPSDLASILTNLDKGDVLFIDEIHRIN 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
             VEEILYPAMEDF LD++VG+GP+A+S++I+L +FTL+ ATTR G+L+ PL+DRFG+ +
Sbjct: 121 RSVEEILYPAMEDFALDIIVGKGPNAQSIRIDLEKFTLVGATTRAGMLSAPLRDRFGVLL 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
            LN Y+ +DL  IV+R A +  + + D+ A EIA RSRGTPRIA RLLRRVRD+A V   
Sbjct: 181 SLNLYDTKDLTKIVKRSADILEIPIEDKGAFEIARRSRGTPRIANRLLRRVRDYAIVKKD 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
           + I  E +   L  L +D MG D +D + +  +  NF GGPVGI+TI+A        IED
Sbjct: 241 EIIDYETSCEGLELLEVDPMGLDNMDKKIVLTMYENFSGGPVGIDTIAASTGIENITIED 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           + EPY++Q GF+ RTPRGR+L   A++H G+    +
Sbjct: 301 VYEPYLLQIGFLTRTPRGRILTRKAYEHYGLKYEDK 336


>gi|17230386|ref|NP_486934.1| Holliday junction DNA helicase RuvB [Nostoc sp. PCC 7120]
 gi|20140065|sp|Q8YT32|RUVB_ANASP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|17131988|dbj|BAB74593.1| Holliday junction DNA helicase [Nostoc sp. PCC 7120]
          Length = 366

 Score =  359 bits (921), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 163/332 (49%), Positives = 225/332 (67%), Gaps = 2/332 (0%)

Query: 4   REGLLSRNVSQEDA--DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           +E +L    + ++       +RP+   ++ GQ +    L + I+AAK+R E LDH+L  G
Sbjct: 29  KEKVLQPEAAIDEQGKQEESIRPQRFADYIGQKDLKDVLDIAIKAAKSRGEVLDHLLLYG 88

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTT+A ++A E+GVN++ TS P + +  D+  LL NL+  D+LFIDEIHRLS + 
Sbjct: 89  PPGLGKTTMAMILASEMGVNYKITSAPALERPRDIVGLLVNLKPGDILFIDEIHRLSRMT 148

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILYPAMED++LD+ VG+G SAR   I LS+FTL+ ATTRVG LT+PL+DRFG+  +L 
Sbjct: 149 EEILYPAMEDYRLDITVGKGSSARIRSIPLSKFTLVGATTRVGALTSPLRDRFGLIQKLR 208

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FYE+++L  IV R A+L    VTD+ A EIA RSRGTPRIA RLL+RVRD+A+V     +
Sbjct: 209 FYEVDELSQIVLRSAQLLQTQVTDDGATEIARRSRGTPRIANRLLKRVRDYAQVKSCAEV 268

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           ++ IA  AL    +D  G D  D R L++I   F GGPVG+ETI+A   E    IE++ E
Sbjct: 269 SQNIAAEALQLFQVDPCGLDWTDRRMLSVIIEQFNGGPVGLETIAAATGEDTQTIEEVYE 328

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           PY++Q G++ RTPRGR     A++H+G   P+
Sbjct: 329 PYLMQIGYLSRTPRGRTATKAAYKHMGFTPPN 360


>gi|228474115|ref|ZP_04058856.1| holliday junction DNA helicase RuvB [Capnocytophaga gingivalis ATCC
           33624]
 gi|228274629|gb|EEK13470.1| holliday junction DNA helicase RuvB [Capnocytophaga gingivalis ATCC
           33624]
          Length = 341

 Score =  359 bits (921), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 180/320 (56%), Positives = 233/320 (72%), Gaps = 1/320 (0%)

Query: 10  RNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
            N+S ++ DI   LRP + ++FTGQ     NLK+F++AA  R EALDH LF GPPGLGKT
Sbjct: 10  SNLSPQELDIERALRPLSFDDFTGQEAILENLKIFVKAANLRGEALDHTLFHGPPGLGKT 69

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           TLA ++A ELGV  + TSGPV+ K GDLA LLTNLE RDVLFIDEIHRLS IVEE LY A
Sbjct: 70  TLANILANELGVGIKITSGPVLDKPGDLAGLLTNLEPRDVLFIDEIHRLSPIVEEYLYSA 129

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           MED+++D+M+  GP+AR+V+I+L+ FTLI ATTR GLLT P++ RFGI  RL +Y  E L
Sbjct: 130 MEDYKIDIMIESGPNARTVQISLNPFTLIGATTRSGLLTAPMRARFGIQSRLQYYTTELL 189

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             I+QR A++ G+ +++EAA E+A RSRGTPRIA  LLRRVRDFA++     I  EI   
Sbjct: 190 ANILQRSAQILGVPISEEAAIELAGRSRGTPRIANALLRRVRDFAQIKGNGKIDIEITRF 249

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL  L +D  G D++D + L  I   F GGPVGI T++  +SE  + +E++ EP++IQQG
Sbjct: 250 ALKALNVDAHGLDEMDNKILLTIIDKFKGGPVGITTLATAVSENAETLEEVYEPFLIQQG 309

Query: 309 FIQRTPRGRLLMPIAWQHLG 328
           FI RTPRGR +  +A++HLG
Sbjct: 310 FIIRTPRGREVTDLAYKHLG 329


>gi|332558999|ref|ZP_08413321.1| Holliday junction DNA helicase RuvB [Rhodobacter sphaeroides WS8N]
 gi|332276711|gb|EGJ22026.1| Holliday junction DNA helicase RuvB [Rhodobacter sphaeroides WS8N]
          Length = 325

 Score =  359 bits (921), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 207/315 (65%), Positives = 253/315 (80%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              LRP++LEEF GQ EA +NL+VFIE+A+ R EA+DH LF GPPGLGKTTLAQ++AREL
Sbjct: 2   DRALRPQSLEEFVGQAEARANLRVFIESARMRGEAMDHTLFHGPPGLGKTTLAQIMAREL 61

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138
           GV FR TSGPV+AK GDLAA+LTNLE RDVLFIDEIHRLS +VEE+LYPA+EDF LDL++
Sbjct: 62  GVGFRMTSGPVLAKPGDLAAILTNLEPRDVLFIDEIHRLSPVVEEVLYPALEDFALDLVI 121

Query: 139 GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKL 198
           GEGP+AR+V+I+L  FTL+ ATTR+GLLT PL+DRFGIP RL FY  ++L  IV RGA++
Sbjct: 122 GEGPAARTVRIDLQPFTLVGATTRLGLLTTPLRDRFGIPTRLQFYTEDELDLIVARGARM 181

Query: 199 TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKM 258
            G+    E   EIA R+RGTPRIAGRLLRRV DFA V     +T+ IAD AL RL +D +
Sbjct: 182 MGVDSDPEGTREIARRARGTPRIAGRLLRRVVDFALVEGDGRLTQAIADRALTRLGVDHL 241

Query: 259 GFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRL 318
           G D  D RY+ +IA N+GGGPVGIETI+A LSE RDA+E++IEPY++QQG IQRTPRGR+
Sbjct: 242 GLDLGDRRYIGLIAENYGGGPVGIETIAAALSESRDAVEEVIEPYLLQQGLIQRTPRGRM 301

Query: 319 LMPIAWQHLGIDIPH 333
           L   AW+H+GI+ P 
Sbjct: 302 LAHKAWRHMGIEPPK 316


>gi|69250108|ref|ZP_00605100.1| Holliday junction DNA helicase RuvB [Enterococcus faecium DO]
 gi|257878808|ref|ZP_05658461.1| holliday junction DNA helicase RuvB [Enterococcus faecium
           1,230,933]
 gi|257881446|ref|ZP_05661099.1| holliday junction DNA helicase RuvB [Enterococcus faecium
           1,231,502]
 gi|257885717|ref|ZP_05665370.1| holliday junction DNA helicase RuvB [Enterococcus faecium
           1,231,501]
 gi|257890667|ref|ZP_05670320.1| holliday junction DNA helicase RuvB [Enterococcus faecium
           1,231,410]
 gi|258615121|ref|ZP_05712891.1| Holliday junction DNA helicase RuvB [Enterococcus faecium DO]
 gi|260558374|ref|ZP_05830570.1| Holliday junction DNA helicase RuvB [Enterococcus faecium C68]
 gi|261207081|ref|ZP_05921770.1| Holliday junction DNA helicase RuvB [Enterococcus faecium TC 6]
 gi|289565917|ref|ZP_06446357.1| Holliday junction DNA helicase RuvB [Enterococcus faecium D344SRF]
 gi|293556857|ref|ZP_06675418.1| holliday junction DNA helicase RuvB [Enterococcus faecium E1039]
 gi|293563769|ref|ZP_06678208.1| holliday junction DNA helicase RuvB [Enterococcus faecium E1162]
 gi|293567840|ref|ZP_06679181.1| holliday junction DNA helicase RuvB [Enterococcus faecium E1071]
 gi|294614615|ref|ZP_06694519.1| holliday junction DNA helicase RuvB [Enterococcus faecium E1636]
 gi|294618497|ref|ZP_06698061.1| holliday junction DNA helicase RuvB [Enterococcus faecium E1679]
 gi|294621206|ref|ZP_06700391.1| holliday junction DNA helicase RuvB [Enterococcus faecium U0317]
 gi|314938832|ref|ZP_07846103.1| Holliday junction DNA helicase RuvB [Enterococcus faecium
           TX0133a04]
 gi|314943638|ref|ZP_07850392.1| Holliday junction DNA helicase RuvB [Enterococcus faecium TX0133C]
 gi|314948717|ref|ZP_07852090.1| Holliday junction DNA helicase RuvB [Enterococcus faecium TX0082]
 gi|314952167|ref|ZP_07855185.1| Holliday junction DNA helicase RuvB [Enterococcus faecium TX0133A]
 gi|314991859|ref|ZP_07857316.1| Holliday junction DNA helicase RuvB [Enterococcus faecium TX0133B]
 gi|314996572|ref|ZP_07861607.1| Holliday junction DNA helicase RuvB [Enterococcus faecium
           TX0133a01]
 gi|68194010|gb|EAN08567.1| Holliday junction DNA helicase RuvB [Enterococcus faecium DO]
 gi|257813036|gb|EEV41794.1| holliday junction DNA helicase RuvB [Enterococcus faecium
           1,230,933]
 gi|257817104|gb|EEV44432.1| holliday junction DNA helicase RuvB [Enterococcus faecium
           1,231,502]
 gi|257821573|gb|EEV48703.1| holliday junction DNA helicase RuvB [Enterococcus faecium
           1,231,501]
 gi|257827027|gb|EEV53653.1| holliday junction DNA helicase RuvB [Enterococcus faecium
           1,231,410]
 gi|260075548|gb|EEW63854.1| Holliday junction DNA helicase RuvB [Enterococcus faecium C68]
 gi|260078709|gb|EEW66411.1| Holliday junction DNA helicase RuvB [Enterococcus faecium TC 6]
 gi|289162290|gb|EFD10150.1| Holliday junction DNA helicase RuvB [Enterococcus faecium D344SRF]
 gi|291589425|gb|EFF21232.1| holliday junction DNA helicase RuvB [Enterococcus faecium E1071]
 gi|291592517|gb|EFF24122.1| holliday junction DNA helicase RuvB [Enterococcus faecium E1636]
 gi|291595254|gb|EFF26583.1| holliday junction DNA helicase RuvB [Enterococcus faecium E1679]
 gi|291599202|gb|EFF30234.1| holliday junction DNA helicase RuvB [Enterococcus faecium U0317]
 gi|291600941|gb|EFF31232.1| holliday junction DNA helicase RuvB [Enterococcus faecium E1039]
 gi|291604250|gb|EFF33745.1| holliday junction DNA helicase RuvB [Enterococcus faecium E1162]
 gi|313589261|gb|EFR68106.1| Holliday junction DNA helicase RuvB [Enterococcus faecium
           TX0133a01]
 gi|313593564|gb|EFR72409.1| Holliday junction DNA helicase RuvB [Enterococcus faecium TX0133B]
 gi|313595699|gb|EFR74544.1| Holliday junction DNA helicase RuvB [Enterococcus faecium TX0133A]
 gi|313597675|gb|EFR76520.1| Holliday junction DNA helicase RuvB [Enterococcus faecium TX0133C]
 gi|313641843|gb|EFS06423.1| Holliday junction DNA helicase RuvB [Enterococcus faecium
           TX0133a04]
 gi|313644889|gb|EFS09469.1| Holliday junction DNA helicase RuvB [Enterococcus faecium TX0082]
          Length = 333

 Score =  359 bits (921), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 170/331 (51%), Positives = 226/331 (68%), Gaps = 1/331 (0%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M  E LLS    + +  +   LRP+ L ++ GQ +    L+++IEAA+ R E LDHVL  
Sbjct: 1   MTDEYLLSPESGENELSLEKSLRPQLLSQYIGQRKVKQELQIYIEAARNREEPLDHVLLY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTT+A V+A E+ VN R+TSGP I + GDL A+L  LE  DVLFIDEIHRL  +
Sbjct: 61  GPPGLGKTTMAMVIANEMTVNIRTTSGPAIERPGDLVAILNELEAGDVLFIDEIHRLPRV 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LY AMEDF +D+MVG+GP+A  V   L  FTLI ATTR G+L+ PL+DRFGI   +
Sbjct: 121 VEEMLYSAMEDFYVDIMVGQGPTAHPVHFPLPPFTLIGATTRAGMLSAPLRDRFGIISHM 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y+ +DL+ IV R + +    + +E A EIA RSRGTPRIA RLL+RVRDFA+V     
Sbjct: 181 EYYDEQDLQEIVLRSSDIFQTEIIEEGALEIARRSRGTPRIANRLLKRVRDFAQVQGDGK 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I R IAD AL  L +D+ G D +D + L  +   +GGGPVG+ T+S  + E R+ +ED+ 
Sbjct: 241 IDRPIADQALTLLQVDQAGLDYVDQKLLRTMIELYGGGPVGLSTLSVNIGEERETVEDMY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           EPY+IQ+GF++RTPRGR+    A++H G D 
Sbjct: 301 EPYLIQKGFLKRTPRGRIATAYAYEHFGYDY 331


>gi|326799875|ref|YP_004317694.1| Holliday junction ATP-dependent DNA helicase ruvB [Sphingobacterium
           sp. 21]
 gi|326550639|gb|ADZ79024.1| Holliday junction ATP-dependent DNA helicase ruvB [Sphingobacterium
           sp. 21]
          Length = 340

 Score =  359 bits (921), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 172/314 (54%), Positives = 224/314 (71%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E     +LRP+  E+FTGQ +   NL++F++AAK R EALDHVL  GPPGLGKTTL+ ++
Sbjct: 16  EKEVEKVLRPQAFEDFTGQHKILENLRIFVQAAKLRGEALDHVLLHGPPGLGKTTLSHII 75

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A E+GV  + TSGPV+ K GDLA LLTNLE  D+LFIDEIHRLS +VEE LY AMEDF++
Sbjct: 76  ANEMGVGIKITSGPVLDKPGDLAGLLTNLEVGDILFIDEIHRLSPLVEEYLYSAMEDFKI 135

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D+M+  GP+ARSV+++LS FTL+ ATTR GLLT PL+ RFGI  RL +Y+ + L TIV R
Sbjct: 136 DIMLETGPNARSVQLSLSPFTLVGATTRSGLLTAPLRARFGINARLQYYDAKLLTTIVLR 195

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A +    +++E A EIA RSRGTPRIA  LLRR RDFA++     I  EIA  AL  L 
Sbjct: 196 SAGILRTPISEEGAYEIARRSRGTPRIANALLRRTRDFAQIKGNGNIDTEIAQYALNALN 255

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D+ G D++D R L  I   F GGPVG++TI+  + E    IE++ EP++IQ+G+I RT 
Sbjct: 256 VDEHGLDEMDNRILLTIIDKFKGGPVGLKTIATAVGEDEGTIEEVYEPFLIQEGYIMRTS 315

Query: 315 RGRLLMPIAWQHLG 328
           RGR    +A++HLG
Sbjct: 316 RGRECTELAYKHLG 329


>gi|325567286|ref|ZP_08143953.1| crossover junction ATP-dependent DNA helicase RuvB [Enterococcus
           casseliflavus ATCC 12755]
 gi|325158719|gb|EGC70865.1| crossover junction ATP-dependent DNA helicase RuvB [Enterococcus
           casseliflavus ATCC 12755]
          Length = 333

 Score =  359 bits (921), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 165/333 (49%), Positives = 222/333 (66%), Gaps = 2/333 (0%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD   +   +  QE+     LRP+TL ++ GQ +    L ++I+AAK R EALDHVL  G
Sbjct: 1   MDERIVSPESTEQEEIIEKSLRPQTLAQYIGQDKVKQELSIYIQAAKNREEALDHVLLYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTT+A V+A E+ V  ++TSGP + K GDL A+L  L+  DVLFIDEIHRL  + 
Sbjct: 61  PPGLGKTTMAMVIANEMQVQIKTTSGPAVEKPGDLIAILNELQPGDVLFIDEIHRLPRVA 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMEDF +D+MVG+G +A  V   L  FTL+ ATTR G+L+ PL+DRFGI   + 
Sbjct: 121 EEMLYSAMEDFYVDIMVGQGTTAHPVHFPLPPFTLVGATTRAGMLSAPLRDRFGIISHMQ 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +YE  DLK IVQR A +    + +E A EIA RSRGTPRIA RLL+RVRD+A+V     I
Sbjct: 181 YYEDHDLKEIVQRTASIFETDIVEEGAIEIARRSRGTPRIANRLLKRVRDYAQVQADGLI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
            R +AD AL  LA+D  G D +D + +  +   + GGPVG+ TI+  + E  + +ED+ E
Sbjct: 241 DRTVADQALALLAVDHAGLDYIDQKLIRTMIELYQGGPVGLSTIAVNIGEETETVEDMYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           P++IQ+GF++RT RGR+  P+A+ H G   P R
Sbjct: 301 PFLIQKGFLKRTSRGRIATPLAYDHFG--YPQR 331


>gi|257454448|ref|ZP_05619710.1| holliday junction DNA helicase RuvB [Enhydrobacter aerosaccus SK60]
 gi|257448214|gb|EEV23195.1| holliday junction DNA helicase RuvB [Enhydrobacter aerosaccus SK60]
          Length = 327

 Score =  359 bits (921), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 194/318 (61%), Positives = 239/318 (75%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
            ++ L+S     ED + + +RP  L E+ GQ      + VFI AA +R EALDH L  GP
Sbjct: 10  SQQRLISPMGRSEDQNDNNIRPALLAEYIGQPVVKEQMGVFINAALSRKEALDHTLIFGP 69

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++ARE+G N RSTSGPV+ +AGDLAA+LTNLE  DVLFIDEIHRLS ++E
Sbjct: 70  PGLGKTTLANIIAREMGGNLRSTSGPVLERAGDLAAMLTNLEPGDVLFIDEIHRLSPMIE 129

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILYPAMEDFQLD+M+GEGP+ARS+K++L  FTL+AATTR GLLT+PL+DRFGI  RL F
Sbjct: 130 EILYPAMEDFQLDIMIGEGPAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRLEF 189

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y + DL TIV R A L  + +T E A E+A RSRGTPRIA RLLRRVRD+A+V    T+T
Sbjct: 190 YNVADLTTIVTRSAGLLNVPMTKEGAVEVARRSRGTPRIANRLLRRVRDYAQVKGDGTVT 249

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            EIA +AL  LA+DK G D LD RYL M+   F GGP G+E+I+A L+E R  +ED+IEP
Sbjct: 250 AEIAHSALDMLAVDKRGLDNLDRRYLEMLEERFNGGPAGVESIAAALAEDRGTLEDVIEP 309

Query: 303 YMIQQGFIQRTPRGRLLM 320
           Y+IQQG+I RT RGR+L 
Sbjct: 310 YLIQQGYIVRTARGRMLT 327


>gi|332668034|ref|YP_004450822.1| Holliday junction ATP-dependent DNA helicase ruvB
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332336848|gb|AEE53949.1| Holliday junction ATP-dependent DNA helicase ruvB
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 342

 Score =  359 bits (921), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 172/322 (53%), Positives = 225/322 (69%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           ++E      LRP+ LEEF+GQ     NLKVFI AAK R +ALDHVL  GPPGLGKTTL+ 
Sbjct: 15  TEEQQVERALRPKALEEFSGQPRIVDNLKVFITAAKQRGDALDHVLLHGPPGLGKTTLSH 74

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++A EL    + +SGPV+ K GDLA LLTNL   DVLFIDEIHRL+ +VEE LY AMED+
Sbjct: 75  IIALELETGLKMSSGPVLEKPGDLAGLLTNLNSGDVLFIDEIHRLNTVVEEYLYSAMEDY 134

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           ++D+M+  GP+ARS++I L+ FTL+ ATTR+GLLT P++ RFGI   L++Y++  LK I+
Sbjct: 135 RIDIMIDSGPNARSIQITLNPFTLVGATTRMGLLTAPMRARFGINCHLDYYDVLTLKKII 194

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R A + GL + +E A EIA RSRGTPRIA  LLRRVRDFA+V     I   IA  AL  
Sbjct: 195 HRSADILGLEIFEEGASEIARRSRGTPRIANALLRRVRDFAQVKGDGRIDEAIAKYALEA 254

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D+ G D++D + L+ I   F GGPVGI TI+  + E    IE++ EP++I +GF+QR
Sbjct: 255 LNVDEYGLDEMDNKILSTIIHKFKGGPVGISTIATAIGEEAGTIEEVHEPFLIMEGFLQR 314

Query: 313 TPRGRLLMPIAWQHLGIDIPHR 334
           TPRGR     A++HLG+  P +
Sbjct: 315 TPRGREATEKAYRHLGVVPPMQ 336


>gi|325290231|ref|YP_004266412.1| Holliday junction DNA helicase subunit RuvB [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324965632|gb|ADY56411.1| Holliday junction DNA helicase subunit RuvB [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 333

 Score =  359 bits (920), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 177/327 (54%), Positives = 232/327 (70%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
              ++S    + D  +  LRP    E+ GQ +   NLK+FIEAA  R E+LDHVL  GPP
Sbjct: 2   ETRVVSVFDQEADRGMEELRPSRFREYIGQSKVKENLKIFIEAALKRGESLDHVLLYGPP 61

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++A E+GVN R+TSGP I + GDLAALLT+LE RDVLFIDEIHRLS   EE
Sbjct: 62  GLGKTTLAHIIASEMGVNIRTTSGPAIERPGDLAALLTSLEPRDVLFIDEIHRLSRTSEE 121

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LY AMED  LD+++G+GP ARS+++ L+ FTLI ATTR G LT+PL+DRFG+  RL FY
Sbjct: 122 VLYSAMEDSCLDIVIGKGPGARSMRLALTPFTLIGATTRAGQLTSPLRDRFGVINRLEFY 181

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
             E+L  IV R A +  + +TDE A EIA RSRGTPRIA RLL+RVRD+A+V     I  
Sbjct: 182 TQEELVEIVTRTAVILDVGLTDEGAEEIAKRSRGTPRIANRLLKRVRDYAQVWENGGIDL 241

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
            +A  AL  L +D +G D +D + L  I  +F GGPVG++T++A + E  + IED++EP+
Sbjct: 242 ALASQALNLLEVDHLGLDNIDKKVLQTIVTSFNGGPVGLDTLAATVGEEAETIEDVVEPF 301

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGID 330
           ++Q+GFIQRTPRGR +  +A +HLG+ 
Sbjct: 302 LLQKGFIQRTPRGRTVTDLALRHLGLS 328


>gi|304440232|ref|ZP_07400122.1| crossover junction ATP-dependent DNA helicase RuvB [Peptoniphilus
           duerdenii ATCC BAA-1640]
 gi|304371281|gb|EFM24897.1| crossover junction ATP-dependent DNA helicase RuvB [Peptoniphilus
           duerdenii ATCC BAA-1640]
          Length = 338

 Score =  359 bits (920), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 179/329 (54%), Positives = 235/329 (71%), Gaps = 1/329 (0%)

Query: 4   REGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
            + L+  N S  ED   S +RP+ + E+ GQ +A   LK+FIEAAK R E+LDHVL  GP
Sbjct: 2   EDRLVEPNFSPSEDILESGIRPKWISEYIGQDKAKEKLKIFIEAAKNRNESLDHVLLNGP 61

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++A E+GVN + TSGP I + GDLA++LTNL++ DVLFIDEIHR++  VE
Sbjct: 62  PGLGKTTLAGIIANEMGVNIKVTSGPAIERPGDLASILTNLQEDDVLFIDEIHRINKSVE 121

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILY AMEDF LD++VG+GPSARS++++LS+FTLI ATTR G LTNPL+DRFG+ + L  
Sbjct: 122 EILYSAMEDFALDIIVGKGPSARSIRLDLSKFTLIGATTRAGSLTNPLRDRFGVILNLEL 181

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y+ E L+ I+ R +K+  + +    A  IA RSRGTPRIA RLL+RVRD+AEV     IT
Sbjct: 182 YDNEALENIILRSSKILNIPIEKNGAKMIAKRSRGTPRIANRLLKRVRDYAEVKENGIIT 241

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            ++A+  L  L ID+ G D LD R + ++  N+GG PVGI+ I+A + E R  IED  EP
Sbjct: 242 EDVANRGLDLLEIDEYGLDSLDRRIIEVMIINYGGRPVGIDAIAASVGEERVTIEDAYEP 301

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           Y++Q GFI RTPRGR+   +A+ HL I  
Sbjct: 302 YLLQIGFINRTPRGRMPTKLAYDHLNIPY 330


>gi|225012182|ref|ZP_03702619.1| Holliday junction DNA helicase RuvB [Flavobacteria bacterium
           MS024-2A]
 gi|225003737|gb|EEG41710.1| Holliday junction DNA helicase RuvB [Flavobacteria bacterium
           MS024-2A]
          Length = 339

 Score =  359 bits (920), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 179/329 (54%), Positives = 232/329 (70%), Gaps = 1/329 (0%)

Query: 1   MMDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M +     + N + E+ DI   LRP +  +F GQ     NLKVF++AAK R EALDH LF
Sbjct: 1   MNENLDPTNENFTPEEQDIDRALRPLSFGDFAGQDAILENLKVFVQAAKQRDEALDHTLF 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A EL V  + TSGPV+ K GDLA LLTNL+ RD+LFIDEIHRLS 
Sbjct: 61  HGPPGLGKTTLAHILANELQVGIKLTSGPVLDKPGDLAGLLTNLQPRDILFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           IVEE LY AMED+++D+M+  GP+AR+V+INL  FTL+ ATTR GLLT P++ RFGI  R
Sbjct: 121 IVEEYLYSAMEDYKIDIMIESGPNARTVQINLEPFTLVGATTRSGLLTAPMRARFGISNR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y  E L TIV+R +++  + +  EAA EIA RSRGTPRI+  LLRRVRDFA++    
Sbjct: 181 LEYYSTELLSTIVERSSEILNVPIAQEAAIEIAGRSRGTPRISNALLRRVRDFAQIKGDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           TI  +I   AL  L +D  G D++D + LT +   F GGPVGI T++  +SE  + IE++
Sbjct: 241 TIDMKITQYALKALQVDTHGLDEMDNKILTTLIDKFKGGPVGITTLATAVSENGETIEEV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
            EP++IQQGFI RTPRGR +  +A++HLG
Sbjct: 301 YEPFLIQQGFIVRTPRGREVTELAYKHLG 329


>gi|291515131|emb|CBK64341.1| Holliday junction DNA helicase subunit RuvB [Alistipes shahii WAL
           8301]
          Length = 335

 Score =  359 bits (920), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 173/324 (53%), Positives = 226/324 (69%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           RN   +    + +RP+ LE F+GQ +   NL +FI+AA  R ++LDHVL  GPPGLGKTT
Sbjct: 5   RNTESDLEFENKIRPQELETFSGQDKIVENLHIFIKAALMRGDSLDHVLLHGPPGLGKTT 64

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           LA ++A E+G   R TSGPV+ K GDLA LLTNL   DVLFIDEIHRLS IVEE LY AM
Sbjct: 65  LANIIANEMGAQLRVTSGPVLDKPGDLAGLLTNLNPGDVLFIDEIHRLSPIVEEYLYSAM 124

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           ED+++D+++ +GPSARS++I L+ FTLI ATTR GLLT+PL+ RFGI   L +Y+   L 
Sbjct: 125 EDYKIDIVLDKGPSARSIQIELAPFTLIGATTRSGLLTSPLRARFGIQCHLEYYDAPVLA 184

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            IV+R A++  +++ D+AA E+A+RSRGTPRIA  LLRRVRDFA V     I  EI   A
Sbjct: 185 GIVRRSARILDVSIDDDAAHEVALRSRGTPRIANALLRRVRDFAMVKGEGHIDLEITRIA 244

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           L  L ID  G DQ+D + L  I   F GGPVG+ T++  + E    IE++ EP++I++GF
Sbjct: 245 LAALNIDSRGLDQMDNKILGTIIEKFNGGPVGLNTVATAVGEEAGTIEEVYEPFLIKEGF 304

Query: 310 IQRTPRGRLLMPIAWQHLGIDIPH 333
           ++RTPRGR   P+A+QHLG   P 
Sbjct: 305 LKRTPRGREATPLAYQHLGFTHPR 328


>gi|225873676|ref|YP_002755135.1| Holliday junction DNA helicase RuvB [Acidobacterium capsulatum ATCC
           51196]
 gi|225793816|gb|ACO33906.1| Holliday junction DNA helicase RuvB [Acidobacterium capsulatum ATCC
           51196]
          Length = 356

 Score =  359 bits (920), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 174/333 (52%), Positives = 236/333 (70%), Gaps = 1/333 (0%)

Query: 3   DREGLLSRN-VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           D E L+S     +ED+    LRP  L EF GQ +A   L + +EAA++R EALDHVL  G
Sbjct: 19  DTERLISAARADEEDSFELKLRPTHLREFIGQNKAKEQLAIALEAARSRGEALDHVLLFG 78

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A EL V F+ TSGP +   GDL A+LTNL ++ VLF+DEIHRL  ++
Sbjct: 79  PPGLGKTTLATIIANELSVGFQQTSGPALQIQGDLTAILTNLREKQVLFLDEIHRLQPVL 138

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE LY A+ED++LD+++G+GP+AR+  +++  FT +AATTR GLL++PL+ RFGI +RL 
Sbjct: 139 EEKLYTALEDYKLDIIIGQGPAARTHVMDIKPFTFVAATTRPGLLSSPLRSRFGILLRLE 198

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY  +DL+ IVQR A++  + +  + A EIAMRSRGTPRIA RLLRRVRDFA+V     I
Sbjct: 199 FYTDDDLRVIVQRSAEVLHVPIDADGAAEIAMRSRGTPRIANRLLRRVRDFAQVRGTGEI 258

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
            RE A  AL  L +D  GFD LD R L  I   + GGPVG+ T++A L+E +DA+E++ E
Sbjct: 259 NRETAMQALELLEVDAHGFDDLDRRLLLTIIEKYDGGPVGLNTLAATLAEEQDALEEVYE 318

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           P++IQ GF+ RTPRGR+    A++H G+ +P +
Sbjct: 319 PFLIQHGFLDRTPRGRVATRAAYEHFGLPLPRK 351


>gi|282858660|ref|ZP_06267818.1| Holliday junction DNA helicase RuvB [Prevotella bivia JCVIHMP010]
 gi|282588578|gb|EFB93725.1| Holliday junction DNA helicase RuvB [Prevotella bivia JCVIHMP010]
          Length = 345

 Score =  359 bits (920), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 172/332 (51%), Positives = 232/332 (69%), Gaps = 1/332 (0%)

Query: 1   MMDREGLLSRNVSQEDAD-ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M +   +    +   + D  + LRP   ++F+GQ +   NL VF+EAAK R E LDH L 
Sbjct: 1   MSEDFDIREERLQSAEKDFENALRPLKFDDFSGQAKVVENLNVFVEAAKYRGEPLDHTLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTL+ ++A ELGV F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS 
Sbjct: 61  HGPPGLGKTTLSNIIANELGVGFKITSGPVLDKPGDLAGILTSLEPNDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE LY AMED+++D+M+ +GPSARS++I+L+ FTL+ ATTR GLLT PL+ RFGI + 
Sbjct: 121 VVEEYLYSAMEDYRIDIMIDKGPSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGINMH 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y+   ++ I++R A L  + + DEAA EIA+RSRGTPRI   LLRRVRDFA+V    
Sbjct: 181 LEYYDTATIQRIIKRSAALLKVPIIDEAAAEIALRSRGTPRICNSLLRRVRDFAQVKGNG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           TIT EIA  +L  L ID+ G D++D + L  I   F GGPVG+ TI+  + E    +E++
Sbjct: 241 TITPEIATMSLQALNIDQYGLDEIDNKILLTIIDKFRGGPVGVSTIATAIGEDSGTVEEV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
            EP++I +GFI+RTPRGR+   +A+ HLG + 
Sbjct: 301 YEPFLIMEGFIKRTPRGRVATQLAYDHLGRNY 332


>gi|160872675|ref|ZP_02062807.1| holliday junction DNA helicase RuvB [Rickettsiella grylli]
 gi|159121474|gb|EDP46812.1| holliday junction DNA helicase RuvB [Rickettsiella grylli]
          Length = 351

 Score =  359 bits (920), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 185/333 (55%), Positives = 236/333 (70%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M   + L S    +ED  I   +RP  L ++ GQ   C  + +FI AA+AR EALDHVL 
Sbjct: 1   MPISDRLTSAKKKREDEKIYPRIRPVALADYLGQTSVCEQMTLFIHAARARQEALDHVLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
           VGPPGLGKTTLA ++A E+ V+ + TSGPV+ +AGDLAALLT+LE  +VLFIDEIHRLS 
Sbjct: 61  VGPPGLGKTTLATIIAHEMAVSLKQTSGPVLERAGDLAALLTHLEPNEVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           ++EEILYPA+ED+QLD+M+GEGP+ARS+K++L  FTLI ATTR GLLT+PL+DRFGI  R
Sbjct: 121 VIEEILYPALEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGLLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY + DL  IV R A +  + +    A EIA R+RGTPRIA RLLRRVRDFAEV    
Sbjct: 181 LTFYSVADLCRIVTRSAGILKVTIDSMGANEIAKRARGTPRIANRLLRRVRDFAEVKSDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I + +A  AL  L +DK GFDQ D + L  +   F GGPVG+++++A + E RD IED+
Sbjct: 241 KIDQSLAAQALDLLEVDKEGFDQQDRKLLLTLIEKFDGGPVGLDSLAAAIGEERDTIEDV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           IEPY+IQQ FI RTPRGR+     + H  + +P
Sbjct: 301 IEPYLIQQAFIMRTPRGRVATKKTFSHFSLAMP 333


>gi|332292205|ref|YP_004430814.1| Holliday junction DNA helicase RuvB [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332170291|gb|AEE19546.1| Holliday junction DNA helicase RuvB [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 340

 Score =  359 bits (920), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 180/329 (54%), Positives = 235/329 (71%), Gaps = 1/329 (0%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M +     +   S+ED D+   LRP + ++F GQ +   NLK+F++AA  R EALDH LF
Sbjct: 1   MNEHLDPTNEGFSREDVDVEKALRPLSFDDFAGQDQVLENLKIFVQAANLRGEALDHTLF 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A EL VN + TSGPV+ K GDLA LLTNL++RDVLFIDEIHRLS 
Sbjct: 61  HGPPGLGKTTLANILANELDVNIKITSGPVLDKPGDLAGLLTNLDERDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           IVEE LY AMED+++D+M+  GP+ARSV+I+L+ FTL+ ATTR GLLT P++ RFGI  R
Sbjct: 121 IVEEYLYSAMEDYRIDIMIETGPNARSVQIDLAPFTLVGATTRSGLLTAPMRARFGISSR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y  E L TIV+R + + G+ ++ EAA EIA RSRGTPRIA  LLRRVRDFA++    
Sbjct: 181 LQYYTTELLTTIVERSSSILGVPISMEAAVEIAGRSRGTPRIANALLRRVRDFAQIKGNG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           +I   IA  +L  L +D  G D++D + L  I   F GGPVGI T++  +SE  + IE++
Sbjct: 241 SIDIAIAKYSLEALNVDAHGLDEMDNKILATIIDKFKGGPVGITTLATAVSESAETIEEV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
            EP++IQQGFI RTPRGR +   A++HLG
Sbjct: 301 YEPFLIQQGFIMRTPRGREVTEEAYRHLG 329


>gi|315223634|ref|ZP_07865488.1| crossover junction ATP-dependent DNA helicase RuvB [Capnocytophaga
           ochracea F0287]
 gi|314946415|gb|EFS98410.1| crossover junction ATP-dependent DNA helicase RuvB [Capnocytophaga
           ochracea F0287]
          Length = 341

 Score =  359 bits (920), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 175/322 (54%), Positives = 227/322 (70%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           +QE      LRP + ++F GQ     NLKVF++AA  R EALDH LF GPPGLGKTTLA 
Sbjct: 14  AQELDIERALRPLSFDDFAGQEAVLENLKVFVKAANMRHEALDHTLFHGPPGLGKTTLAH 73

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++A ELGV  + TSGPV+ K GDLA LLTNL++RDVLFIDEIHRLS +VEE LY AMED+
Sbjct: 74  ILANELGVGIKITSGPVLDKPGDLAGLLTNLQERDVLFIDEIHRLSPVVEEYLYSAMEDY 133

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           ++D+M+  GP+AR+V+INL+ FTLI ATTR GLLT P++ RFGI  RL +Y  E L  IV
Sbjct: 134 KIDIMIESGPNARTVQINLNPFTLIGATTRSGLLTAPMRARFGIQSRLQYYSTELLADIV 193

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           QR A +  + ++ EAA E+A RSRGTPRIA  LLRR+RDFA++     I   I    L  
Sbjct: 194 QRSASILKVPISMEAAIELASRSRGTPRIANALLRRIRDFAQIKGNGEINIAITRFGLKA 253

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D  G D++D + L+ +   F GGPVGI T++  +SE  + IE++ EP++IQ+GFI R
Sbjct: 254 LNVDAHGLDEMDNKILSTLIDKFKGGPVGITTLATAVSESAETIEEVYEPFLIQEGFIVR 313

Query: 313 TPRGRLLMPIAWQHLGIDIPHR 334
           TPRGR +  +A++HLG   P R
Sbjct: 314 TPRGREVTDLAYKHLGRVNPTR 335


>gi|256420297|ref|YP_003120950.1| Holliday junction DNA helicase RuvB [Chitinophaga pinensis DSM
           2588]
 gi|256035205|gb|ACU58749.1| Holliday junction DNA helicase RuvB [Chitinophaga pinensis DSM
           2588]
          Length = 355

 Score =  359 bits (920), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 181/322 (56%), Positives = 230/322 (71%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           R  + E    + +RPR + +F+GQ +   NLK+FI+AAK R EALDH+LF GPPGLGKTT
Sbjct: 24  RQSAAEKEFENSIRPREIVDFSGQDQIIENLKIFIKAAKMRGEALDHILFHGPPGLGKTT 83

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           L+++VA E+GVN + TSGPVI K GDLA LLTNLED+DVLFIDEIHRLS +VEE LY AM
Sbjct: 84  LSRIVANEMGVNIKETSGPVIEKPGDLAGLLTNLEDKDVLFIDEIHRLSTVVEEYLYSAM 143

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           ED+++D+M+  GPSARS++I L  FTLI ATTR GLLT PL  RFGI  RL +Y    L+
Sbjct: 144 EDYRIDIMIDTGPSARSIQITLHPFTLIGATTRSGLLTAPLLSRFGIKSRLEYYNAATLQ 203

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            I+ R + +    +T +AA EIA RSRGTPRIA  LLRRVRDFA+V    TI  EIA  +
Sbjct: 204 KIIWRASDILHTKITSDAAMEIARRSRGTPRIANGLLRRVRDFAQVMGNGTIDLEIAQFS 263

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           L  L +D+ G D++D R L +I  NF GGPVGI TI+  + E    +E++ EP++IQ+GF
Sbjct: 264 LKALNVDEYGLDEMDNRILQVIIENFKGGPVGITTIATAVGEESGTLEEVYEPFLIQEGF 323

Query: 310 IQRTPRGRLLMPIAWQHLGIDI 331
           I+RTPRGR +   A+ HLG   
Sbjct: 324 IKRTPRGREVTEKAYIHLGKAP 345


>gi|329113835|ref|ZP_08242606.1| Holliday junction ATP-dependent DNA helicase RuvB [Acetobacter
           pomorum DM001]
 gi|326696845|gb|EGE48515.1| Holliday junction ATP-dependent DNA helicase RuvB [Acetobacter
           pomorum DM001]
          Length = 358

 Score =  359 bits (920), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 206/330 (62%), Positives = 249/330 (75%), Gaps = 2/330 (0%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           +  +     +ED   S LRP+TL +FTGQ  +  NL +FI+AAK R +ALDHVL  GPPG
Sbjct: 8   DREIDAARREEDVGESTLRPQTLHDFTGQKASRENLSIFIKAAKQRGDALDHVLLHGPPG 67

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLAQ+VARELGV FR+TSGPVI +AGDLAA+LTNL+ RDVLFIDEIHRL   +EEI
Sbjct: 68  LGKTTLAQIVARELGVGFRATSGPVIQRAGDLAAILTNLQPRDVLFIDEIHRLQPAIEEI 127

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPAMEDFQLDL++GEGP+ARSV+I+L  FTL+AATTR GLL  PL+DRFGIP+RL FY 
Sbjct: 128 LYPAMEDFQLDLIIGEGPAARSVRIDLPPFTLVAATTRAGLLATPLRDRFGIPLRLVFYT 187

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA--EVAHAKTIT 242
            E+L  IV RGA+    A+T   A EIA RSRGTPRIAGRLLRRVRDFA   V     + 
Sbjct: 188 PEELCKIVARGAEKLDFALTQGGAMEIARRSRGTPRIAGRLLRRVRDFASVTVPVGVPVE 247

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            E+ADAAL RL +D +G D +D RYL  IA    GGPVG+ET++A L+E RD +ED+IEP
Sbjct: 248 TEVADAALKRLEVDALGLDAMDRRYLRRIAEYHHGGPVGVETLAAALAESRDTLEDVIEP 307

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           Y+IQ+G + RT RGR+L    W+HLG+  P
Sbjct: 308 YLIQEGLVLRTTRGRVLGERGWRHLGLTPP 337


>gi|312892031|ref|ZP_07751532.1| Holliday junction DNA helicase RuvB [Mucilaginibacter paludis DSM
           18603]
 gi|311295528|gb|EFQ72696.1| Holliday junction DNA helicase RuvB [Mucilaginibacter paludis DSM
           18603]
          Length = 340

 Score =  359 bits (920), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 177/320 (55%), Positives = 227/320 (70%), Gaps = 1/320 (0%)

Query: 10  RNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
            N+S  + DI   LRP+  E+FTGQ +  +NLK+F++AAK R EALDHVL  GPPGLGKT
Sbjct: 10  ENLSPAERDIEKVLRPQAFEDFTGQHKILANLKIFVQAAKLRGEALDHVLLHGPPGLGKT 69

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           TL+ ++A E+G   + TSGPV+ K GDLA LLTNLE  D+LFIDEIHRLS +VEE LY A
Sbjct: 70  TLSHIIANEMGSGIKITSGPVLDKPGDLAGLLTNLESGDILFIDEIHRLSPLVEEYLYSA 129

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           MEDF++D+M+  GP+ARSV+I+L+ FTL+ ATTR GLLT PL+ RFGI  RL +Y+ + L
Sbjct: 130 MEDFKIDIMLESGPNARSVQISLNPFTLVGATTRSGLLTAPLRARFGINSRLEYYDAKLL 189

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
            TIV R A +    + DEAA EIA RSRGTPRIA  LLRR RDFA+V     I  EIA  
Sbjct: 190 TTIVLRSASILKTPIRDEAAYEIARRSRGTPRIANSLLRRTRDFAQVKGNGQIDTEIARY 249

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL  L +D+ G D++D + L  I   F GGPVG++TI+  + E    IE++ EP++IQ+G
Sbjct: 250 ALNALNVDEHGLDEMDNKILLTIIDKFKGGPVGLKTIATAVGEDEGTIEEVYEPFLIQEG 309

Query: 309 FIQRTPRGRLLMPIAWQHLG 328
           F+ RT RGR     A++HLG
Sbjct: 310 FLMRTSRGREATDNAYKHLG 329


>gi|325104948|ref|YP_004274602.1| Holliday junction DNA helicase RuvB [Pedobacter saltans DSM 12145]
 gi|324973796|gb|ADY52780.1| Holliday junction DNA helicase RuvB [Pedobacter saltans DSM 12145]
          Length = 337

 Score =  359 bits (920), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 171/314 (54%), Positives = 223/314 (71%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           +     +LRP+  ++FTGQ +   NLK+F++AAK R E LDHVL  GPPGLGKTTL+ ++
Sbjct: 16  DKEIEKVLRPQEFDDFTGQEKILENLKIFVKAAKLRGEPLDHVLLHGPPGLGKTTLSHII 75

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A E+GV  + TSGPV+ K GDLA LLTNL+  D+LFIDEIHRLS +VEE LY AMEDF++
Sbjct: 76  ANEMGVGIKITSGPVLDKPGDLAGLLTNLDAGDILFIDEIHRLSPLVEEYLYSAMEDFKI 135

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D+M+  GP+ARSV+I+LS FTL+ ATTR GLLT PL+ RFGI  RL +Y+ + L TIV R
Sbjct: 136 DIMLETGPNARSVQISLSPFTLVGATTRSGLLTAPLRARFGINSRLQYYDAKLLTTIVIR 195

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A +    +T+  A EIA RSRGTPRIA  LLRR RDFA++     I  EIA  AL  L 
Sbjct: 196 SAYILKTPITETGAYEIARRSRGTPRIANALLRRTRDFAQIKGNGEIDTEIAKYALNALN 255

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D+ G D++D R L+ I   F GGPVG++TI+  + E    IE++ EP++IQ+G++ RT 
Sbjct: 256 VDEHGLDEMDNRILSTIVDKFKGGPVGLKTIATAVGEDEGTIEEVYEPFLIQEGYLMRTS 315

Query: 315 RGRLLMPIAWQHLG 328
           RGR   P A+QHLG
Sbjct: 316 RGREATPAAYQHLG 329


>gi|313677438|ref|YP_004055434.1| holliday junction DNA helicase ruvb [Marivirga tractuosa DSM 4126]
 gi|312944136|gb|ADR23326.1| Holliday junction DNA helicase RuvB [Marivirga tractuosa DSM 4126]
          Length = 342

 Score =  359 bits (920), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 175/327 (53%), Positives = 238/327 (72%), Gaps = 1/327 (0%)

Query: 9   SRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
             N++ E+ +    LRP +  +FTGQ +   N++VF++AAK R+E LDHVL  GPPGLGK
Sbjct: 10  DENLNPEEKEFEKALRPLSFGDFTGQQKTVDNIQVFVQAAKKRSEPLDHVLLHGPPGLGK 69

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127
           TTL+ ++A ELG + + TSGPV+ K GDLA LLTNLE+ DVLFIDEIHRL+ +VEE LY 
Sbjct: 70  TTLSHIIANELGSSLKVTSGPVLDKPGDLAGLLTNLEEGDVLFIDEIHRLNAVVEEYLYS 129

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           AMEDF++D+M+  GP+ARSV+I+LS FTLI ATTR GLLT+PL+ RFGI  RL +Y+ E 
Sbjct: 130 AMEDFRIDIMLDSGPNARSVQISLSPFTLIGATTRSGLLTSPLRARFGINARLEYYDAEL 189

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           LK I++R A +    + ++AA EIA RSRGTPRI+  LLRR RDFAE+    TIT+EIA+
Sbjct: 190 LKKIIKRSAAILNTPLQEDAAFEIARRSRGTPRISNTLLRRTRDFAEIKGDGTITKEIAE 249

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
            AL  L +D+ G D++D R L+ I   F GGPVG+ TI+  + E  D IE++ EP++I++
Sbjct: 250 FALNALDVDQHGLDEMDNRILSTIIEKFNGGPVGLGTIATAVGEEADTIEEVYEPFLIKE 309

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           G+++RT RGR    +A++HLG   P +
Sbjct: 310 GYLKRTARGRQATELAYKHLGSVPPGK 336


>gi|224023566|ref|ZP_03641932.1| hypothetical protein BACCOPRO_00269 [Bacteroides coprophilus DSM
           18228]
 gi|224016788|gb|EEF74800.1| hypothetical protein BACCOPRO_00269 [Bacteroides coprophilus DSM
           18228]
          Length = 341

 Score =  359 bits (920), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 172/329 (52%), Positives = 235/329 (71%), Gaps = 1/329 (0%)

Query: 1   MMDREGLLSRNVSQEDAD-ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M ++  +     + ++ D  + LRP   E+F+GQ +   NL++F++AA+ RAEALDHVL 
Sbjct: 1   MEEQFDIRDYKPTGKERDFENALRPLQFEDFSGQDKVVDNLRIFVKAARLRAEALDHVLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTL+ ++A ELGV F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS 
Sbjct: 61  HGPPGLGKTTLSNIIANELGVGFKVTSGPVLDKPGDLAGVLTSLEPNDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE LY AMED+++D+M+ +GPSARS++++L+ FTL+ ATTR GLLT PL+ RFGI + 
Sbjct: 121 VVEEYLYSAMEDYRIDIMIDKGPSARSIQLDLNPFTLVGATTRSGLLTAPLRARFGINLH 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y+   L  I+ R A + G+    +AA EIA RSRGTPRIA  LLRRVRDFA+V  + 
Sbjct: 181 LEYYDDTILSRIILRSAGILGVPCDVDAAGEIASRSRGTPRIANALLRRVRDFAQVKGSG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  EIA  AL  L ID+ G DQ+D + L  I   F GGPVG+ TI+  L E    +E++
Sbjct: 241 RIDVEIARYALEALNIDRYGLDQIDNKLLCTIIDKFKGGPVGLTTIATALGEDPGTLEEV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
            EP++I++GF++RTPRGR +  +A++HLG
Sbjct: 301 YEPFLIKEGFLKRTPRGREVTELAYKHLG 329


>gi|302874956|ref|YP_003843589.1| Holliday junction DNA helicase RuvB [Clostridium cellulovorans
           743B]
 gi|307690426|ref|ZP_07632872.1| Holliday junction DNA helicase RuvB [Clostridium cellulovorans
           743B]
 gi|302577813|gb|ADL51825.1| Holliday junction DNA helicase RuvB [Clostridium cellulovorans
           743B]
          Length = 342

 Score =  359 bits (920), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 172/333 (51%), Positives = 227/333 (68%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD   +   N      +   LRP+ L+E+ GQ +    L +FIEAA+ R E LDHVL  G
Sbjct: 1   MDERIVSGENFESFGDNELSLRPQNLKEYIGQYKVKEKLSIFIEAAQRRHEPLDHVLLYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+G   + TSGP I +AGDLAA+LT L+D DVLFIDEIHR++  V
Sbjct: 61  PPGLGKTTLATIIANEMGGTLKITSGPAIERAGDLAAILTGLKDNDVLFIDEIHRMNRAV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILYPAMED+ LD+++G+G SA+S++I+L +FTLI ATTR+GLLT PL+DRFG+   + 
Sbjct: 121 EEILYPAMEDYALDIVIGKGASAKSIRIDLPKFTLIGATTRIGLLTAPLRDRFGVMCPME 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y+  DLK I+ R + +  L + +EAA E+A RSRGTPRIA RLL+RVRD+ +V      
Sbjct: 181 YYDESDLKEIISRSSSILDLPIDEEAAMELAKRSRGTPRIANRLLKRVRDYCDVKSNGIA 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
                  AL  L ID  GFD +D + L+ I  NF GGPVGIET+S  + E    +ED+ E
Sbjct: 241 NLSSTREALKLLDIDTEGFDTIDNKILSAIIINFKGGPVGIETLSYFIGEELGTLEDVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           PY++Q+GFI RTPRGR     A++HL I I  +
Sbjct: 301 PYLLQKGFILRTPRGRTATEKAYRHLNIPINEK 333


>gi|212696228|ref|ZP_03304356.1| hypothetical protein ANHYDRO_00764 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676857|gb|EEB36464.1| hypothetical protein ANHYDRO_00764 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 337

 Score =  359 bits (920), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 170/336 (50%), Positives = 234/336 (69%), Gaps = 2/336 (0%)

Query: 1   MMDR-EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M D+ E ++  N    D    L +RP+ L ++ GQ +A   LK+FIE++  R EALDHVL
Sbjct: 1   MYDQNERIVGSNEQINDKYKELSIRPKWLNDYIGQDKAKEKLKIFIESSLKREEALDHVL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTL+ ++A ELGVN R TSGP I +  DLA++LTNL+  DVLFIDEIHR++
Sbjct: 61  LQGPPGLGKTTLSNIIANELGVNIRITSGPAIERPSDLASILTNLDKGDVLFIDEIHRIN 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
             VEEILYPAMEDF LD++VG+GP+A+S++I+L +FTL+ ATTR G+L+ PL+DRFG+ +
Sbjct: 121 RSVEEILYPAMEDFALDIIVGKGPNAQSIRIDLEKFTLVGATTRAGMLSAPLRDRFGVLL 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
            LN Y+ +DL  IV+R A +  + + ++ A EIA RSRGTPRIA RLL+RVRD+A V   
Sbjct: 181 SLNLYDTKDLTKIVKRSADILDIPIDEKGAFEIARRSRGTPRIANRLLKRVRDYAIVKKD 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
           + I  E +   L  L +D MG D +D + +  +  NF GGPVG++TI+A        IED
Sbjct: 241 EIIDYETSCEGLELLEVDPMGLDNMDKKIVLTMHENFDGGPVGVDTIAASTGIENVTIED 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           + EPY++Q GF+ RTPRGR+L   A++H G+    +
Sbjct: 301 VYEPYLLQIGFLTRTPRGRILTKKAYEHYGLKYKDK 336


>gi|313158960|gb|EFR58337.1| Holliday junction DNA helicase RuvB [Alistipes sp. HGB5]
          Length = 335

 Score =  359 bits (920), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 168/323 (52%), Positives = 225/323 (69%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           RN   +    + +RP+ LE F+GQ +   NL++FI+AA  R ++LDHVL  GPPGLGKTT
Sbjct: 5   RNTESDLEFENKIRPQELETFSGQDKIVDNLRIFIKAALMRGDSLDHVLLHGPPGLGKTT 64

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           LA +++ E+    R TSGPV+ K GDLA LLT+L   DVLFIDEIHRLS IVEE LY AM
Sbjct: 65  LANIISNEMNAQLRVTSGPVLDKPGDLAGLLTSLNPGDVLFIDEIHRLSPIVEEYLYSAM 124

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           ED+++D+++ +GPSARS++I L+ FTLI ATTR GLLT+PL+ RFGI   L +Y+   L 
Sbjct: 125 EDYKIDIVLDKGPSARSIQIELAPFTLIGATTRSGLLTSPLRARFGIQCHLEYYDAPVLA 184

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            IV+R A++  +++ D+AA E+A+RSRGTPRIA  LLRRVRDFA V     I  EI    
Sbjct: 185 GIVKRSARILDVSIDDDAAHEVALRSRGTPRIANALLRRVRDFAMVKGEGHIDLEITQIG 244

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           L  L ID  G DQ+D + L  I   FGGGPVG+ TI+  + E    IE++ EP++I++GF
Sbjct: 245 LAALNIDSRGLDQMDNKILGTIIEKFGGGPVGLNTIATAVGEDAGTIEEVYEPFLIKEGF 304

Query: 310 IQRTPRGRLLMPIAWQHLGIDIP 332
           ++RTPRGR    +A++H+G   P
Sbjct: 305 LKRTPRGREATELAYRHMGFTPP 327


>gi|187933032|ref|YP_001885222.1| Holliday junction DNA helicase RuvB [Clostridium botulinum B str.
           Eklund 17B]
 gi|238691635|sp|B2TMZ2|RUVB_CLOBB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|187721185|gb|ACD22406.1| Holliday junction DNA helicase RuvB [Clostridium botulinum B str.
           Eklund 17B]
          Length = 344

 Score =  359 bits (920), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 174/325 (53%), Positives = 236/325 (72%), Gaps = 1/325 (0%)

Query: 5   EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E +++     ED +  L LRP+ + E+ GQ +    L +FI+AA+ R EALDHVL  GPP
Sbjct: 2   ERIVTPAEMFEDGNSELSLRPQKINEYIGQDKVKERLNIFIKAARNRKEALDHVLLYGPP 61

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++A+E+  + + TSGP I +AGDLAA+LT L+D DVLFIDEIHRL+  VEE
Sbjct: 62  GLGKTTLANIIAKEMTGDLKITSGPAIERAGDLAAILTTLKDYDVLFIDEIHRLNRSVEE 121

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILYPAMED+ LD+++G+G +A+S++++L +FTLI ATTR+G+LT+PL+DRFG+   + +Y
Sbjct: 122 ILYPAMEDYALDIVIGKGAAAKSIRLDLPKFTLIGATTRIGMLTSPLRDRFGVLCAMEYY 181

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           +   LK IV R A + G  +T+E A EIA RSRGTPRIA RLL+RVRD++EV   K I+ 
Sbjct: 182 DETQLKEIVIRSAAVFGCKITEEGALEIASRSRGTPRIANRLLKRVRDYSEVKSNKVISL 241

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           + A  AL  L +D  GFD++D + L  I  NF GGPVGIET+S  + E    IED+ EPY
Sbjct: 242 KEARDALELLEVDNQGFDKVDNKILEAIIDNFNGGPVGIETLSYFIGEELGTIEDVYEPY 301

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLG 328
           ++Q+GFI RTPRGR+    A++HLG
Sbjct: 302 LLQKGFIVRTPRGRIASDKAYKHLG 326


>gi|327439541|dbj|BAK15906.1| holliday junction resolvasome, helicase subunit [Solibacillus
           silvestris StLB046]
          Length = 334

 Score =  359 bits (920), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 169/333 (50%), Positives = 224/333 (67%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M    L       E      LRP+ L ++ GQ +   NLK+FIEAAK R E+LDHVL  G
Sbjct: 1   MSDRVLSGEATDAEQQFELSLRPQRLAQYIGQDKVKENLKIFIEAAKLRQESLDHVLLYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA V+A E+ VN + TSGP I + GDLAA+L++LE  DVLFIDEIHRL   +
Sbjct: 61  PPGLGKTTLAIVIANEMDVNVKMTSGPAIERPGDLAAILSSLEAGDVLFIDEIHRLPRAI 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMEDF LD++VG+GP ARS+++ L  FTL+ ATTR G L+ PL+DRFG+  RL 
Sbjct: 121 EEVLYSAMEDFCLDIVVGKGPEARSIRLELPPFTLVGATTRAGALSAPLRDRFGVLSRLE 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y+ + L  IV R  +L G+A+   AA EIA RSRGTPRIA RLL+RVRD+A+V     +
Sbjct: 181 YYDEQSLAEIVIRSGELFGVALDKHAAFEIARRSRGTPRIANRLLKRVRDYAQVLADGIV 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           +  +A+ AL  L +D  G D +D + +  +   FGGGPVG++ ++A + E R  IED+ E
Sbjct: 241 STSLAEQALELLQVDPRGLDHIDHKLMQSMIERFGGGPVGLDALAASIGEERITIEDVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           PY++Q GFIQRTPRGR+   + + H G     +
Sbjct: 301 PYLLQIGFIQRTPRGRIATNLCYDHFGYPQTQK 333


>gi|75907231|ref|YP_321527.1| Holliday junction DNA helicase RuvB [Anabaena variabilis ATCC
           29413]
 gi|97189907|sp|Q3MEF4|RUVB_ANAVT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|75700956|gb|ABA20632.1| Holliday junction DNA helicase subunit RuvB [Anabaena variabilis
           ATCC 29413]
          Length = 366

 Score =  359 bits (920), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 163/332 (49%), Positives = 225/332 (67%), Gaps = 2/332 (0%)

Query: 4   REGLLSRNVSQEDA--DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           +E +L    + ++       +RP+   ++ GQ +    L + I+AAK+R E LDH+L  G
Sbjct: 29  KEKVLQPEAAIDEQGKQEESIRPQKFADYIGQKDLKDVLDIAIKAAKSRGEVLDHLLLYG 88

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTT+A ++A E+GVN++ TS P + +  D+  LL NL+  D+LFIDEIHRLS + 
Sbjct: 89  PPGLGKTTMAMILASEMGVNYKITSAPALERPRDIVGLLVNLKPGDILFIDEIHRLSRMT 148

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILYPAMED++LD+ VG+G SAR   I LS+FTL+ ATTRVG LT+PL+DRFG+  +L 
Sbjct: 149 EEILYPAMEDYRLDITVGKGSSARIRSIPLSKFTLVGATTRVGALTSPLRDRFGLIQKLR 208

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FYE+++L  IV R A+L    VTD+ A EIA RSRGTPRIA RLL+RVRD+A+V     +
Sbjct: 209 FYEVDELSQIVLRSAQLLQTQVTDDGATEIARRSRGTPRIANRLLKRVRDYAQVKSCTEV 268

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           ++ IA  AL    +D  G D  D R L++I   F GGPVG+ETI+A   E    IE++ E
Sbjct: 269 SQNIAAEALQLFQVDPCGLDWTDRRMLSVIIEQFNGGPVGLETIAAATGEDTQTIEEVYE 328

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           PY++Q G++ RTPRGR     A++H+G   P+
Sbjct: 329 PYLMQIGYLSRTPRGRTATKAAYKHMGFTPPN 360


>gi|317495144|ref|ZP_07953514.1| Holliday junction DNA helicase RuvB [Gemella moribillum M424]
 gi|316914566|gb|EFV36042.1| Holliday junction DNA helicase RuvB [Gemella moribillum M424]
          Length = 333

 Score =  359 bits (920), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 168/332 (50%), Positives = 239/332 (71%), Gaps = 1/332 (0%)

Query: 4   REGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
            E ++S +++  E+ +   LRP+ L ++ GQ +  +NLK+FIEAAK RAE LDH L  GP
Sbjct: 2   EERMVSAHLNDGEENEEQSLRPKFLNQYIGQEQIKNNLKIFIEAAKLRAEVLDHCLLYGP 61

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++A E+GV  + TSGP I K+GDLAA+LT+LE  DVLFIDEIHR+S  +E
Sbjct: 62  PGLGKTTLATIIANEMGVGIKYTSGPAIEKSGDLAAILTSLEPGDVLFIDEIHRISRSIE 121

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILY AMEDF LD+++G+G  +R+++I L  FTL+ ATTR G LT PL+DRFG+  RL F
Sbjct: 122 EILYSAMEDFYLDIVIGKGDESRNIRIELPPFTLVGATTRAGALTAPLRDRFGVHCRLEF 181

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y +++LK I+ R + +    + ++++ EIAMRSRGTPRIA RLL+RVRDFA+V +   IT
Sbjct: 182 YNVDELKNIIDRTSDIFNCEIDEQSSYEIAMRSRGTPRIANRLLKRVRDFAQVKNDGVIT 241

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           +++A ++L  L +D  G D +D + L  + + + G  VG+ETI+  + E    IED+ EP
Sbjct: 242 QKLATSSLDLLQVDGQGLDSIDYKILECLIKRYDGRAVGLETIAITIGEESITIEDVYEP 301

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           Y++++GFI+RTPRGR   P A++HLGI+   +
Sbjct: 302 YLVKEGFIERTPRGRRATPKAYKHLGIEYIEK 333


>gi|184154992|ref|YP_001843332.1| Holliday junction DNA helicase RuvB [Lactobacillus fermentum IFO
           3956]
 gi|227514530|ref|ZP_03944579.1| crossover junction endoribonuclease subunit B [Lactobacillus
           fermentum ATCC 14931]
 gi|183226336|dbj|BAG26852.1| holliday junction DNA helicase RuvB [Lactobacillus fermentum IFO
           3956]
 gi|227087087|gb|EEI22399.1| crossover junction endoribonuclease subunit B [Lactobacillus
           fermentum ATCC 14931]
          Length = 339

 Score =  359 bits (920), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 173/333 (51%), Positives = 226/333 (67%), Gaps = 2/333 (0%)

Query: 3   DREGLLSRNVS--QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           D + +LS  V+  QE  D   LRP+TL  + GQ      L V+I+AAK+R EALDHVL  
Sbjct: 4   DFDDVLSNEVTDDQEGRDEVSLRPQTLATYIGQARIKHELAVYIQAAKSRGEALDHVLLY 63

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA V+A E+ V  ++TSGP I K GDL ALL +L+  DVLFIDEIHRL  +
Sbjct: 64  GPPGLGKTTLAMVIANEMQVAIKTTSGPAIEKPGDLVALLNDLKPGDVLFIDEIHRLPKV 123

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LY AMEDF +D++VGEGP+A  V   L  FTLI ATTR GLL  PL+DRFGI  R+
Sbjct: 124 VEEMLYSAMEDFYIDIVVGEGPTAHPVHFPLPPFTLIGATTRAGLLAAPLRDRFGIVARM 183

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           ++Y   +L  I+ R A +    + ++ A E+A+RSRGTPRIA RLL+RVRDFA+V     
Sbjct: 184 DYYTTTELSQIIDRSATIFNTKIQEDGAHELALRSRGTPRIANRLLKRVRDFAQVGGQAA 243

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I     D AL  LA+D  G D++D + LT +  ++ GGPVGI TI+A + E  + IE++ 
Sbjct: 244 IDPATVDRALDLLAVDDQGLDEIDRKLLTTMIEHYHGGPVGIRTIAANIGEEVNTIEEMY 303

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY++Q GF+ RTPRGR++ P A++HL I    
Sbjct: 304 EPYLLQIGFLMRTPRGRVVTPAAYEHLKIPFDQ 336


>gi|149370926|ref|ZP_01890521.1| Holliday junction DNA helicase B [unidentified eubacterium SCB49]
 gi|149355712|gb|EDM44270.1| Holliday junction DNA helicase B [unidentified eubacterium SCB49]
          Length = 340

 Score =  359 bits (920), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 185/320 (57%), Positives = 233/320 (72%), Gaps = 1/320 (0%)

Query: 10  RNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
            N+S +D DI   LRP + E+FTGQ +A  NL++F++AA  R EALDH LF GPPGLGKT
Sbjct: 10  ENLSPQDLDIEKTLRPLSFEDFTGQDQALENLQIFVQAANQRGEALDHALFHGPPGLGKT 69

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           TLA ++A EL V  + TSGPV+ K GDLA LLTNLE+RDVLFIDEIHRLS IVEE LY A
Sbjct: 70  TLAHILANELEVGIKVTSGPVLDKPGDLAGLLTNLEERDVLFIDEIHRLSPIVEEYLYSA 129

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           MED+++D+M+  GP+ARSV+I+L+ FTL+ ATTR GLLT P++ RFGI  RL +Y  E L
Sbjct: 130 MEDYKIDIMIESGPNARSVQIHLAPFTLVGATTRSGLLTAPMRARFGISSRLQYYSTELL 189

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
            TI+QR A +  + ++ EAA EIA RSRGTPRIA  LLRRVRDFA++     I   IA  
Sbjct: 190 TTILQRSAGILNMPISMEAAIEIAGRSRGTPRIANALLRRVRDFAQIKGDGNIDITIAKF 249

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL  L +D  G D++D + LT I   F GGPVGI TI+  +SE  + IE++ EP++IQQG
Sbjct: 250 ALNALNVDAHGLDEMDNKILTTIIDKFKGGPVGITTIATAVSESPETIEEVYEPFLIQQG 309

Query: 309 FIQRTPRGRLLMPIAWQHLG 328
           FI RTPRGR +   A++HLG
Sbjct: 310 FIMRTPRGREVTEAAYKHLG 329


>gi|298373909|ref|ZP_06983867.1| holliday junction DNA helicase RuvB [Bacteroides sp. 3_1_19]
 gi|298268277|gb|EFI09932.1| holliday junction DNA helicase RuvB [Bacteroides sp. 3_1_19]
          Length = 345

 Score =  359 bits (920), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 176/329 (53%), Positives = 234/329 (71%), Gaps = 1/329 (0%)

Query: 1   MMDREGLLSRNVSQEDAD-ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M D   +    + + + +  ++LRP +L +F+GQ +   NLKVF+ AA+ R EALDHVL 
Sbjct: 5   MEDDFDIRDARMPENEREYENVLRPLSLRDFSGQAKVVENLKVFVMAARMRKEALDHVLL 64

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTL+ ++A ELGV F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS 
Sbjct: 65  HGPPGLGKTTLSNIIANELGVGFKVTSGPVLDKPGDLAGVLTSLEKNDVLFIDEIHRLSP 124

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           IVEE LY AMED+++D+++ +GPSARS++I+L+ FTLI ATTR GLLT+PL+ RFGI + 
Sbjct: 125 IVEEYLYSAMEDYRIDIVIDKGPSARSIQIDLAPFTLIGATTRSGLLTSPLRARFGINMH 184

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y++E L  IV R A +  +     AA EIA RSRGTPRIA  LLRRVRDFA+V    
Sbjct: 185 LEYYDMETLTKIVLRSANILNVKCELNAAREIASRSRGTPRIANALLRRVRDFAQVKGNG 244

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I + IA  +L  L ID+ G DQ+D + LT I   F GGPVG+ TI+  L E    +E++
Sbjct: 245 DIDKAIACFSLEALNIDRYGLDQIDNKLLTTIIDKFKGGPVGLTTIATALGEDPGTLEEV 304

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
            EP++I++GFI+RTPRGR +  +A+ HLG
Sbjct: 305 YEPFLIKEGFIKRTPRGREVTDLAYTHLG 333


>gi|188589876|ref|YP_001920352.1| Holliday junction DNA helicase RuvB [Clostridium botulinum E3 str.
           Alaska E43]
 gi|238689662|sp|B2V338|RUVB_CLOBA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|188500157|gb|ACD53293.1| Holliday junction DNA helicase RuvB [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 344

 Score =  358 bits (919), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 173/325 (53%), Positives = 235/325 (72%), Gaps = 1/325 (0%)

Query: 5   EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E +++     ED +  L LRP+ + E+ GQ +    L +FI+AAK R EALDHVL  GPP
Sbjct: 2   ERIVTPAEMFEDGNSELSLRPQKINEYIGQDKVKERLNIFIKAAKNRKEALDHVLLYGPP 61

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++A+E+  + + TSGP I +AGDLAA+LT L+D DVLFIDEIHRL+  VEE
Sbjct: 62  GLGKTTLANIIAKEMTGDLKITSGPAIERAGDLAAILTTLKDYDVLFIDEIHRLNRSVEE 121

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILYPAMED+ LD+++G+G +A+S++++L +FTLI ATTR+G+LT+PL+DRFG+   + +Y
Sbjct: 122 ILYPAMEDYALDIVIGKGAAAKSIRLDLPKFTLIGATTRIGMLTSPLRDRFGVLCAMEYY 181

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           +   LK IV R A + G  +T+E A EIA RSRGTPRIA RLL+RVRD++EV     I+ 
Sbjct: 182 DENQLKEIVIRSAAVFGCKITEEGALEIASRSRGTPRIANRLLKRVRDYSEVKSNTVISL 241

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           + A  AL  L +D  GFD++D + L  I  NF GGPVGIET+S  + E    +ED+ EPY
Sbjct: 242 KEAREALELLEVDNQGFDKVDNKILEAIIDNFNGGPVGIETLSYFIGEELGTVEDVYEPY 301

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLG 328
           ++Q+GFI RTPRGR+    A++HLG
Sbjct: 302 LLQKGFIVRTPRGRIASDKAYKHLG 326


>gi|320528323|ref|ZP_08029485.1| Holliday junction DNA helicase RuvB [Solobacterium moorei F0204]
 gi|320131237|gb|EFW23805.1| Holliday junction DNA helicase RuvB [Solobacterium moorei F0204]
          Length = 337

 Score =  358 bits (919), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 174/332 (52%), Positives = 230/332 (69%), Gaps = 3/332 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M + + LLS N    D D   LRP+TL+E+ GQ     N++++I+AA  R E+LDHVL  
Sbjct: 1   MEESDRLLSANAEMGD-DEESLRPQTLDEYIGQDTLKENIRIYIQAALQRNESLDHVLLY 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTL+ ++A E+    R  SGP I KAGDLAA+L+ LE  DVLFIDEIHRL   
Sbjct: 60  GPPGLGKTTLSFILANEMHSKVRVASGPSITKAGDLAAILSVLEPGDVLFIDEIHRLPKQ 119

Query: 121 VEEILYPAMEDFQLDLMVG--EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
           VEE+LYPAMEDF+LD+M+G   G   RSV+++L  FTL+ ATTR G L+ PL+DRFGI  
Sbjct: 120 VEEVLYPAMEDFELDIMIGGENGAGGRSVRLDLPPFTLVGATTRAGDLSAPLRDRFGIVA 179

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           +L +Y  E L +IV R A++    +   A  EIA RSRGTPRIA RLLRR+RDFA+V + 
Sbjct: 180 KLEYYNQEQLCSIVSRTARVLNAPIHTAAVDEIARRSRGTPRIANRLLRRIRDFAQVLND 239

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             I++EIA  AL RL +D +G D++D+RYL  I   F GGPVG+E+++  +SE    +ED
Sbjct: 240 GHISKEIAQTALDRLKVDSLGLDEVDIRYLRGIIERFHGGPVGLESLANAISEETTTLED 299

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           + EPY+IQ GF+ RT RGR++   A++HL I 
Sbjct: 300 VYEPYLIQIGFVNRTSRGRVVTEKAYEHLHIT 331


>gi|325299225|ref|YP_004259142.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacteroides
           salanitronis DSM 18170]
 gi|324318778|gb|ADY36669.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacteroides
           salanitronis DSM 18170]
          Length = 341

 Score =  358 bits (919), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 176/329 (53%), Positives = 236/329 (71%), Gaps = 1/329 (0%)

Query: 1   MMDREGLLSRNVSQEDAD-ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M ++  +     + ++ D  + LRP   E+F+GQ +   NL++F++AA+ RAEALDHVL 
Sbjct: 1   MEEQFDIRDYKPTGKERDFENALRPLQFEDFSGQDKVVDNLRIFVKAARLRAEALDHVLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTL+ ++A ELGV FR TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS 
Sbjct: 61  HGPPGLGKTTLSNIIANELGVGFRVTSGPVLDKPGDLAGVLTSLEPNDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE LY AMED+++D+M+ +GPSARS++++L+ FTL+ ATTR GLLT PL+ RFGI + 
Sbjct: 121 VVEEYLYSAMEDYRIDIMIDKGPSARSIQLDLNPFTLVGATTRSGLLTAPLRARFGINLH 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +YE   L  I+ R AK+ G+    EAA EIA RSRGTPRIA  LLRRVRDFA+V  + 
Sbjct: 181 LEYYEDSTLTKIILRSAKILGVPCDTEAAGEIASRSRGTPRIANALLRRVRDFAQVKGSG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  +IA  AL  L ID+ G DQ+D + L  I   F GGPVG+ TI+  L E    IE++
Sbjct: 241 RIDLKIAQFALEALNIDRYGLDQIDNKLLCTIIDKFRGGPVGLTTIATALGEDPGTIEEV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
            EP++I++GF++RTPRGR +  +A++HLG
Sbjct: 301 YEPFLIKEGFLKRTPRGREVTELAYRHLG 329


>gi|256838236|ref|ZP_05543746.1| Holliday junction DNA helicase RuvB [Parabacteroides sp. D13]
 gi|256739155|gb|EEU52479.1| Holliday junction DNA helicase RuvB [Parabacteroides sp. D13]
          Length = 345

 Score =  358 bits (919), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 176/329 (53%), Positives = 234/329 (71%), Gaps = 1/329 (0%)

Query: 1   MMDREGLLSRNVSQEDAD-ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M D   +    + + + +  ++LRP +L +F+GQ +   NLKVF+ AA+ R EALDHVL 
Sbjct: 5   MEDDFDIRDARMPENEREYENVLRPLSLRDFSGQAKVVENLKVFVMAARMRKEALDHVLL 64

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTL+ ++A ELGV F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS 
Sbjct: 65  HGPPGLGKTTLSNIIANELGVGFKVTSGPVLDKPGDLAGVLTSLEKNDVLFIDEIHRLSP 124

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           IVEE LY AMED+++D+++ +GPSARS++I+L+ FTLI ATTR GLLT+PL+ RFGI + 
Sbjct: 125 IVEEYLYSAMEDYRIDIVIDKGPSARSIQIDLAPFTLIGATTRSGLLTSPLRARFGINMH 184

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y++E L  IV R A +  +     AA EIA RSRGTPRIA  LLRRVRDFA+V    
Sbjct: 185 LEYYDMETLTKIVLRSANILNVKCELNAAREIASRSRGTPRIANALLRRVRDFAQVKGNG 244

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I + IA  +L  L ID+ G DQ+D + LT I   F GGPVG+ TI+  L E    +E++
Sbjct: 245 DIDKAIACFSLEALNIDRYGLDQIDNKLLTTIIDKFQGGPVGLTTIATALGEDPGTLEEV 304

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
            EP++I++GFI+RTPRGR +  +A+ HLG
Sbjct: 305 YEPFLIKEGFIKRTPRGREVTDLAYTHLG 333


>gi|227510190|ref|ZP_03940239.1| Holliday junction DNA helicase B [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227190395|gb|EEI70462.1| Holliday junction DNA helicase B [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 339

 Score =  358 bits (919), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 164/332 (49%), Positives = 223/332 (67%), Gaps = 2/332 (0%)

Query: 1   MMDREGLLSRNV--SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M   + ++S       E+     LRP+TL ++ GQ +  + LKV+I+AAK R E+LDHVL
Sbjct: 1   MDKDDRIVSPENVNGDENNIEKTLRPQTLGDYIGQTDVKNELKVYIKAAKQREESLDHVL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA V+A E+GVN R+T+GP I K GDL +LL  L   DVLFIDEIHRL 
Sbjct: 61  LYGPPGLGKTTLAMVIANEMGVNIRTTTGPAIDKPGDLLSLLNELNPGDVLFIDEIHRLP 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            +VEE+LY AMEDF +D++VG+G  A  V   L  FTLI ATTR G+L+ PL+DRFGI  
Sbjct: 121 KVVEEMLYSAMEDFFVDIIVGQGSGAHPVHFPLPPFTLIGATTRAGMLSAPLRDRFGIVE 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
            +N+YE+ DL+ IVQR A +  + +    A EIA+RSRGTPR+A RLL+R+RDFA+V   
Sbjct: 181 HMNYYEVSDLEEIVQRTAGIFQIPILKSGAHEIALRSRGTPRVANRLLKRIRDFAQVFDK 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
            +I  EI   AL +L +D +G D  D++ L  +   + GGPVG++T++A + E  D I +
Sbjct: 241 DSIDLEIVRYALEKLKVDDLGLDATDIKLLRTMIDYYDGGPVGLKTLAANIGEETDTIAE 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           + EPY++Q G I+RT RGR + P  ++HL   
Sbjct: 301 MYEPYLLQIGLIKRTARGRRVTPKGYEHLHYP 332


>gi|325954063|ref|YP_004237723.1| Holliday junction ATP-dependent DNA helicase ruvB [Weeksella virosa
           DSM 16922]
 gi|323436681|gb|ADX67145.1| Holliday junction ATP-dependent DNA helicase ruvB [Weeksella virosa
           DSM 16922]
          Length = 344

 Score =  358 bits (919), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 170/327 (51%), Positives = 233/327 (71%), Gaps = 4/327 (1%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           +R+     ++  ED+    +RP+  ++F GQ     NL++F++A+K R EALDHVL  GP
Sbjct: 8   ERDFYPEDDLRNEDS----VRPQQFDDFAGQAHILENLEIFVKASKLRNEALDHVLLHGP 63

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++A ELGV  + TSGPV+ K GDLA LLTNLE  DVLFIDEIHR+S ++E
Sbjct: 64  PGLGKTTLANIIANELGVGIKITSGPVLDKPGDLAGLLTNLEPNDVLFIDEIHRMSPVIE 123

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E LY AMEDF++D+M+  GP+ARSV+I L+ FTLI ATTR GLLT PL+ RFGI  R  +
Sbjct: 124 EYLYSAMEDFKIDIMIESGPNARSVQIGLNPFTLIGATTRSGLLTAPLRARFGINFRFEY 183

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y +E L +I++R +++    + +EAA EIA RSRGTPRIA  LLRR RDFA++     IT
Sbjct: 184 YSVELLSSIIERSSRILHTPIDEEAAIEIASRSRGTPRIANALLRRTRDFAQIKGDGKIT 243

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           ++IA+ +L  L +D+ G D++D R LT + + F GGPVGI TI+  + E    +E++ EP
Sbjct: 244 KKIANYSLSALKVDQNGLDEMDNRILTTLIKKFNGGPVGITTIATAVGENGGTLEEVYEP 303

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           Y+IQ+G++ RT RGR+    A++HLGI
Sbjct: 304 YLIQEGYLMRTARGRVATEKAYRHLGI 330


>gi|255531791|ref|YP_003092163.1| Holliday junction DNA helicase RuvB [Pedobacter heparinus DSM 2366]
 gi|255344775|gb|ACU04101.1| Holliday junction DNA helicase RuvB [Pedobacter heparinus DSM 2366]
          Length = 340

 Score =  358 bits (919), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 174/335 (51%), Positives = 233/335 (69%), Gaps = 1/335 (0%)

Query: 1   MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M +     S ++S  + DI   LRP+  ++FTGQ +   NLK+F++AAK R E LDHVL 
Sbjct: 1   MNENLDPSSESLSPVERDIEKVLRPQAFDDFTGQEKVMENLKIFVKAAKLRGEPLDHVLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTL+ ++A E+GV  + TSGPV+ K GDLA LLT L++ D+LFIDEIHRLS 
Sbjct: 61  HGPPGLGKTTLSLIIANEMGVGIKVTSGPVLDKPGDLAGLLTGLDEGDILFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE LY AMEDF++D+M+  GP+ARSV+I+L+ FTL+ ATTR GLLT PL+ RFGI  R
Sbjct: 121 LVEEYLYSAMEDFKIDIMLESGPNARSVQISLNPFTLVGATTRSGLLTAPLRARFGINSR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y+ + L TIV R +++    +TDE A EIA RSRGTPRIA  LLRR RDFA++    
Sbjct: 181 LAYYDAKLLTTIVLRSSEILKTPITDEGAYEIARRSRGTPRIANALLRRTRDFAQIKGTG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  EIA  AL  L +D+ G D++D + LT I   F GGPVG++TI+  + E    IE++
Sbjct: 241 EIDTEIARYALKALNVDEHGLDEMDNKILTTIIDKFKGGPVGLKTIATAVGEDEGTIEEV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
            EP++IQ+GF+ RT RGR     A++HL  + P +
Sbjct: 301 YEPFLIQEGFLMRTSRGREATEAAYKHLQRNFPGQ 335


>gi|86131987|ref|ZP_01050583.1| Holliday junction ATP-dependent DNA helicase RuvB [Dokdonia
           donghaensis MED134]
 gi|85817321|gb|EAQ38501.1| Holliday junction ATP-dependent DNA helicase RuvB [Dokdonia
           donghaensis MED134]
          Length = 340

 Score =  358 bits (919), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 181/329 (55%), Positives = 237/329 (72%), Gaps = 1/329 (0%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M +     +   S+E+ DI   LRP + ++F GQ +   NLKVF++AA  R EALDH LF
Sbjct: 1   MNEHLDPTNEGYSREEVDIEKALRPLSFDDFAGQDQVLENLKVFVQAANLRGEALDHTLF 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A ELGVN + TSGPV+ K GDLA LLTNL++RDVLFIDEIHRLS 
Sbjct: 61  HGPPGLGKTTLANILANELGVNIKITSGPVLDKPGDLAGLLTNLDERDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           IVEE LY AMED+++D+M+  GP+AR+V+I+L+ FTL+ ATTR GLLT P++ RFGI  R
Sbjct: 121 IVEEYLYSAMEDYRIDIMIETGPNARTVQIDLAPFTLVGATTRSGLLTAPMRARFGISSR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y  E L TIVQR + + G+ ++ EAA EIA RSRGTPRIA  LLRRVRDFA++    
Sbjct: 181 LQYYTTELLTTIVQRSSSILGVPISMEAAIEIAGRSRGTPRIANALLRRVRDFAQIKGNG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           +I  +IA  +L  L +D  G D++D + L  I   F GGPVG+ T++  +SE  + IE++
Sbjct: 241 SIDIKIAKYSLEALHVDAHGLDEMDNKILATIIDKFKGGPVGLTTLATAVSESAETIEEV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
            EP++IQQGFI RTPRGR +   A++HLG
Sbjct: 301 YEPFLIQQGFIMRTPRGREVTEDAYKHLG 329


>gi|288800395|ref|ZP_06405853.1| holliday junction DNA helicase RuvB [Prevotella sp. oral taxon 299
           str. F0039]
 gi|288332608|gb|EFC71088.1| holliday junction DNA helicase RuvB [Prevotella sp. oral taxon 299
           str. F0039]
          Length = 345

 Score =  358 bits (919), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 168/329 (51%), Positives = 230/329 (69%), Gaps = 1/329 (0%)

Query: 1   MMDREGLLSRNVSQEDAD-ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M +   +     S  + D  + LRP    +F+GQ +   NL++F+EAAK R E LDH L 
Sbjct: 1   MTEEFDIREEKYSPAEKDFENALRPPKFADFSGQQKVVDNLQIFVEAAKYRGEPLDHTLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTL+ ++A ELGV F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS 
Sbjct: 61  HGPPGLGKTTLSNIIANELGVGFKITSGPVLDKPGDLAGILTSLEPNDVLFIDEIHRLSA 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE LY AMED+++D+M+ +GPSARS++I+L+ FTL+ ATTR GLLT PL+ RFGI + 
Sbjct: 121 VVEEYLYSAMEDYRIDIMIDKGPSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGINLH 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y+ + +  I++R A +  + + D+AA EIA RSRGTPRIA  LLRRVRDFA+V  + 
Sbjct: 181 LEYYDNDTIARIIKRSASIIRVPIDDDAAAEIAGRSRGTPRIANALLRRVRDFAQVKGSG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  +IA  AL  L ID+ G D++D + L  I   F GGPVG+ TI+  + E    +E++
Sbjct: 241 RINIDIAQYALSALNIDQYGLDEIDNKILLTIIDKFKGGPVGVSTIATAIGEDSGTVEEV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
            EP++I +GFI+RTPRGR+   +A++H G
Sbjct: 301 YEPFLIMEGFIKRTPRGRMATELAYRHFG 329


>gi|262383193|ref|ZP_06076330.1| Holliday junction DNA helicase RuvB [Bacteroides sp. 2_1_33B]
 gi|262296071|gb|EEY84002.1| Holliday junction DNA helicase RuvB [Bacteroides sp. 2_1_33B]
          Length = 345

 Score =  358 bits (919), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 176/329 (53%), Positives = 234/329 (71%), Gaps = 1/329 (0%)

Query: 1   MMDREGLLSRNVSQEDAD-ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M D   +    + + + +  ++LRP +L +F+GQ +   NLKVF+ AA+ R EALDHVL 
Sbjct: 5   MEDDFDIRDARMPENEREYENVLRPLSLRDFSGQAKVVENLKVFVMAARMRKEALDHVLL 64

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTL+ ++A ELGV F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS 
Sbjct: 65  HGPPGLGKTTLSNIIANELGVGFKVTSGPVLDKPGDLAGVLTSLEKNDVLFIDEIHRLSP 124

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           IVEE LY AMED+++D+++ +GPSARS++I+L+ FTLI ATTR GLLT+PL+ RFGI + 
Sbjct: 125 IVEEYLYSAMEDYRIDIVIDKGPSARSIQIDLAPFTLIGATTRSGLLTSPLRARFGINMH 184

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y++E L  IV R A +  +     AA EIA RSRGTPRIA  LLRRVRDFA+V    
Sbjct: 185 LEYYDMETLTKIVLRSANILNVKCELNAAREIASRSRGTPRIANALLRRVRDFAQVKGNG 244

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I + IA  +L  L ID+ G DQ+D + LT I   F GGPVG+ TI+  L E    +E++
Sbjct: 245 DIDKAIACFSLEALNIDRYGLDQIDNKLLTTIIDKFQGGPVGLTTIATALGEDPGTLEEV 304

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
            EP++I++GFI+RTPRGR +  +A+ HLG
Sbjct: 305 YEPFLIKEGFIKRTPRGREVTDLAYTHLG 333


>gi|315923965|ref|ZP_07920193.1| crossover junction ATP-dependent DNA helicase RuvB
           [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315622805|gb|EFV02758.1| crossover junction ATP-dependent DNA helicase RuvB
           [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 353

 Score =  358 bits (919), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 165/329 (50%), Positives = 223/329 (67%), Gaps = 1/329 (0%)

Query: 4   REGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           ++ +++   ++ D +I S LRP +LEE+ GQ      + +FI AAK R E+LDHVL  GP
Sbjct: 2   KDRIITTEFTEPDIEIESSLRPTSLEEYIGQSRVKKQMGIFIAAAKNRGESLDHVLLYGP 61

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++A E+G + R TSGP I K GDLA++LT L+  DVLFIDEIHR+   VE
Sbjct: 62  PGLGKTTLANIIAGEMGTHIRITSGPAIEKPGDLASILTGLKAGDVLFIDEIHRMQRQVE 121

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMEDF LD+++G+GP A+SV+++L RFTL+ ATTR GLL+ PL+DRFG+  RL  
Sbjct: 122 EVLYPAMEDFALDIIIGKGPGAKSVRLDLPRFTLVGATTRAGLLSAPLRDRFGVVQRLEL 181

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y+  DL  IV+R A +  + + +  A E+A RSRGTPRIA RLL+RVRD+AE   +  I 
Sbjct: 182 YDAADLSAIVRRSAGILNIDLDEAGAMELARRSRGTPRIANRLLKRVRDYAETEGSGHID 241

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
              A  AL    +D  G D +D   L  IA  F GGPVG+ T++A + E    IE++ EP
Sbjct: 242 LATARRALALFEVDDKGLDDIDRLMLRTIAEKFDGGPVGLNTLAAAIGEEPGTIEEVYEP 301

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           Y++Q GF+ RTP GR++     +HLGI  
Sbjct: 302 YLMQLGFLSRTPSGRIITSAGCRHLGIAP 330


>gi|229918407|ref|YP_002887053.1| Holliday junction DNA helicase RuvB [Exiguobacterium sp. AT1b]
 gi|259495666|sp|C4L523|RUVB_EXISA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|229469836|gb|ACQ71608.1| Holliday junction DNA helicase RuvB [Exiguobacterium sp. AT1b]
          Length = 333

 Score =  358 bits (919), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 181/329 (55%), Positives = 238/329 (72%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD   L   +   ED++   LRP+  E++ GQ +A  NL VFI+AAK R+E LDHVL  G
Sbjct: 1   MDERLLSQSHQQYEDSEEWSLRPQRFEQYIGQEKAKGNLSVFIQAAKLRSETLDHVLLYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLAQ++A E+GV  ++T+GP I + GDLAA+L+ LE  DVLFIDEIHRLS  +
Sbjct: 61  PPGLGKTTLAQIIANEMGVGIKTTAGPAIERPGDLAAILSTLEPGDVLFIDEIHRLSRTI 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILYPAMED+ LD++ G+G  ARSV+I+L  FTL+ ATTR G+L+ PL+DRFG+ ++L 
Sbjct: 121 EEILYPAMEDYCLDIVYGQGEMARSVRIDLPPFTLVGATTRAGMLSAPLRDRFGVTLKLE 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +YE  +L  IV R A+L  L+++ EA+  IA RSRGTPRIA RLLRRVRDFA+VA  K I
Sbjct: 181 YYETHELAAIVSRTAQLFRLSISPEASGAIAKRSRGTPRIANRLLRRVRDFAQVAGTKEI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
              +A  AL RL +D +G D++D R L  +   FGGGPVG+ET++A + E    IED+ E
Sbjct: 241 DPVLASDALDRLHVDALGLDEVDHRLLRAMVERFGGGPVGLETLAATIGEDAQTIEDVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           PY++QQGF+QRTPRGR++   A  H G +
Sbjct: 301 PYLLQQGFLQRTPRGRMITQFAKSHFGYE 329


>gi|262039464|ref|ZP_06012768.1| holliday junction DNA helicase RuvB [Leptotrichia goodfellowii
           F0264]
 gi|261746531|gb|EEY34066.1| holliday junction DNA helicase RuvB [Leptotrichia goodfellowii
           F0264]
          Length = 353

 Score =  358 bits (919), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 167/329 (50%), Positives = 234/329 (71%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M+ E +L+     ED     LRP+T  E+ GQ +    + +FI+AAK R EA+DH+L  G
Sbjct: 1   MENERILASEELGEDNIQKTLRPKTFSEYIGQEDLKEKMNIFIKAAKMRNEAMDHILLYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA V+A E+GVN + T+GPV+ KAGDLAA+LT+LE+ D+LFIDEIHRL+  V
Sbjct: 61  PPGLGKTTLAGVIATEMGVNLKITTGPVLEKAGDLAAILTSLEENDILFIDEIHRLNTSV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILYPAMED +LD+++G+GPSARS++I L +FTLI ATT+ G L+ PL+DRFG+  R+ 
Sbjct: 121 EEILYPAMEDGELDILIGKGPSARSIRIELPKFTLIGATTKAGQLSTPLRDRFGVTHRME 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y++E+LK I++RGA +  ++  ++   EIA RSRGTPRIA RL +R RDFA V     +
Sbjct: 181 YYKLEELKEIIRRGANIFQVSYDEDGITEIAKRSRGTPRIANRLFKRARDFALVEGKGIL 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
            +   D  L  L +D+ G D+LD   L  I   + GGPVGIET+S  L E +  IE++ E
Sbjct: 241 DKASVDGILKLLGVDESGLDELDRNILKSIINVYNGGPVGIETLSLLLGEDKRTIEEVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           PY+++ G+I+RT RGR++    ++HLG++
Sbjct: 301 PYLVKIGYIKRTQRGRVVTEHGYRHLGLE 329


>gi|227513118|ref|ZP_03943167.1| Holliday junction DNA helicase B [Lactobacillus buchneri ATCC
           11577]
 gi|227524333|ref|ZP_03954382.1| Holliday junction DNA helicase B [Lactobacillus hilgardii ATCC
           8290]
 gi|227083693|gb|EEI19005.1| Holliday junction DNA helicase B [Lactobacillus buchneri ATCC
           11577]
 gi|227088564|gb|EEI23876.1| Holliday junction DNA helicase B [Lactobacillus hilgardii ATCC
           8290]
          Length = 339

 Score =  358 bits (919), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 163/332 (49%), Positives = 222/332 (66%), Gaps = 2/332 (0%)

Query: 1   MMDREGLLSRNV--SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M   + ++S       E+     LRP+TL ++ GQ +  + LKV+I+AAK R E+LDHVL
Sbjct: 1   MDKDDRIVSPENVNGDENNIEKTLRPQTLGDYIGQTDVKNELKVYIKAAKQREESLDHVL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA V+A E+GVN R+T+GP I K GDL +LL  L   DVLFIDEIHRL 
Sbjct: 61  LYGPPGLGKTTLAMVIANEMGVNIRTTTGPAIDKPGDLLSLLNELNPGDVLFIDEIHRLP 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            +VEE+LY AMEDF +D++VG+G  A  V   L  FTLI ATT+ G+L+ PL+DRFGI  
Sbjct: 121 KVVEEMLYSAMEDFFVDIIVGQGSGAHPVHFPLPPFTLIGATTQAGMLSAPLRDRFGIVE 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
            +N+YE+ DL+ IVQR A +  + +    A EIA+RSRGTPR+A RLL+R+RDFA+V   
Sbjct: 181 HMNYYEVSDLEEIVQRTAGIFQIPILKSGAHEIALRSRGTPRVANRLLKRIRDFAQVFDK 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             I  EI   AL +L +D +G D  D++ L  +   + GGPVG++T++A + E  D I +
Sbjct: 241 DNIDLEIVRYALEKLKVDDLGLDATDIKLLRTMIDYYDGGPVGLKTLAANIGEETDTIAE 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           + EPY++Q G I+RT RGR + P  ++HL   
Sbjct: 301 MYEPYLLQIGLIKRTARGRRVTPKGYEHLHYP 332


>gi|308095082|ref|ZP_05903319.2| holliday junction DNA helicase RuvB [Vibrio parahaemolyticus
           Peru-466]
 gi|308087266|gb|EFO36961.1| holliday junction DNA helicase RuvB [Vibrio parahaemolyticus
           Peru-466]
          Length = 305

 Score =  358 bits (919), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 181/303 (59%), Positives = 234/303 (77%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
            ++ GQ      +++FI+AA+ R+EALDH+L  GPPGLGKTTLA +VA E+ VN R+TSG
Sbjct: 2   ADYQGQDHVRDQMEIFIKAAQLRSEALDHLLIFGPPGLGKTTLANIVANEMEVNIRTTSG 61

Query: 88  PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSV 147
           PV+ KAGDLAALLTNLE+ DVLFIDEIHRLS +VEE+LYPAMED+QLD+M+GEGP+ARS+
Sbjct: 62  PVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQLDIMIGEGPAARSI 121

Query: 148 KINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEA 207
           KI+L  FTLI ATTR G LT+PL+DRFGI  RL +Y+++DL+ IVQR A   GL++  E 
Sbjct: 122 KIDLPPFTLIGATTRAGSLTSPLRDRFGITQRLEYYKVQDLQNIVQRSADCLGLSMEPEG 181

Query: 208 ACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRY 267
           A E+A R+RGTPRIA RLLRRVRD+AEV     I  ++AD AL  L +D  GFD +D + 
Sbjct: 182 ALEVARRARGTPRIANRLLRRVRDYAEVKGNGHICADVADKALNMLDVDAQGFDYMDRKL 241

Query: 268 LTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHL 327
           L  I   FGGGPVG++ ++A + E +D IED++EPY+IQQG++QRTPRGR+    A+ H 
Sbjct: 242 LLAIMEKFGGGPVGLDNMAAAIGEEKDTIEDVLEPYLIQQGYLQRTPRGRIATDRAYLHF 301

Query: 328 GID 330
           GI+
Sbjct: 302 GIE 304


>gi|225620634|ref|YP_002721892.1| Holliday junction DNA helicase B [Brachyspira hyodysenteriae WA1]
 gi|254767413|sp|C0R250|RUVB_BRAHW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|225215454|gb|ACN84188.1| Holliday junction DNA helicase B [Brachyspira hyodysenteriae WA1]
          Length = 346

 Score =  358 bits (919), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 175/329 (53%), Positives = 231/329 (70%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD+E + +   +  D   + +RP+  ++F GQ    S LKVFI +AK R  +LDH+LF G
Sbjct: 1   MDKESITNAEENSYDKPNNNIRPQGFDDFLGQNNIKSKLKVFINSAKKREVSLDHILFYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLAQ++A E+G N ++TS P+I + GDLA++LT L ++D+LFIDEIHRL  +V
Sbjct: 61  PPGLGKTTLAQIIANEMGSNIKATSAPIIERPGDLASILTTLGEKDILFIDEIHRLRTVV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMEDF +D+ VGEG SA+S ++ L  FTLI ATTR GLL+ PL DRFGI  RL 
Sbjct: 121 EEVLYSAMEDFFVDIKVGEGTSAKSFRVKLPHFTLIGATTRSGLLSTPLYDRFGIVERLE 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY  EDL  IV+R ++   + +TDEAA  IA RSRGTPRI  RLLRRV DFA V     I
Sbjct: 181 FYTNEDLANIVKRSSEFLNINITDEAAISIASRSRGTPRIVNRLLRRVFDFATVHDVLKI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
             + A  +L +L IDK GF+ LD  YL  I +++ GGPVG++T+S  LSE  + IED+IE
Sbjct: 241 DEKFACDSLEKLGIDKNGFEALDKLYLNTIIKHYNGGPVGVDTLSVSLSEQIETIEDVIE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           PY+IQ GFI+RTP+GR+    A+ +L + 
Sbjct: 301 PYLIQCGFIKRTPKGRVATNKAYGYLNLS 329


>gi|328953596|ref|YP_004370930.1| Holliday junction ATP-dependent DNA helicase ruvB [Desulfobacca
           acetoxidans DSM 11109]
 gi|328453920|gb|AEB09749.1| Holliday junction ATP-dependent DNA helicase ruvB [Desulfobacca
           acetoxidans DSM 11109]
          Length = 359

 Score =  358 bits (918), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 179/332 (53%), Positives = 237/332 (71%), Gaps = 1/332 (0%)

Query: 1   MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M ++E  +S     ED  + + LRPR+L EF GQ E   +L++ I AAK R+EALDH+L 
Sbjct: 18  MEEQERFVSSRRHPEDLGLEIGLRPRSLREFVGQDEVKRSLELAITAAKGRSEALDHILL 77

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            G PGLGKTTLA ++A+ELG   R+TSGPVI + GDLAALLTN +  DVLFIDEIHRL  
Sbjct: 78  HGHPGLGKTTLATIIAQELGAGLRTTSGPVIERPGDLAALLTNQKPGDVLFIDEIHRLPH 137

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED++LDL++G+GP AR++++++ RFTL+ ATTR GLLT  L+DRFG+ +R
Sbjct: 138 VVEEVLYPAMEDYKLDLIIGQGPGARAIRLDIPRFTLVGATTRAGLLTPALRDRFGLMLR 197

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           + FY  + L+ IV R A    + +    A EIA RSRGTPRIA RLL+RVRDFA+V    
Sbjct: 198 VEFYHPDHLQAIVTRSAGALQIDIEVAGAAEIARRSRGTPRIANRLLKRVRDFAQVHGDG 257

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            ITR+IADAAL  L +D  GFD++D R L  I   F GGPVG++T++A L E RD +ED+
Sbjct: 258 RITRQIADAALNLLEVDNRGFDRMDRRILLTIIEKFDGGPVGVDTLAAALCEERDTLEDV 317

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
            EP++IQ GF+ RTPRGR+   +A ++     
Sbjct: 318 YEPFLIQCGFLNRTPRGRVATRLAQEYFDRKP 349


>gi|22299796|ref|NP_683043.1| Holliday junction DNA helicase B [Thermosynechococcus elongatus
           BP-1]
 gi|32130027|sp|Q8DGR1|RUVB_THEEB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|22295980|dbj|BAC09805.1| Holliday junction DNA helicase [Thermosynechococcus elongatus BP-1]
          Length = 363

 Score =  358 bits (918), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 174/331 (52%), Positives = 226/331 (68%), Gaps = 3/331 (0%)

Query: 6   GLLSRNVSQEDA---DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
            +LS   + E+        LRP +L+++ GQ E    L + I+AAKAR E LDH+L  GP
Sbjct: 19  SVLSNQPTPEEQHSLAEDSLRPHSLQDYIGQQELKEVLHIAIQAAKARQEPLDHLLLYGP 78

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTT+A ++A E+GVN + TS P + +  D+  LL NL+  D+LFIDEIHRLS + E
Sbjct: 79  PGLGKTTIALILAAEMGVNCKVTSAPALERPRDIVGLLVNLQAGDILFIDEIHRLSRMTE 138

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMEDF LDL VG+  +AR  ++ L+RFTL+ ATTR G LT+PL+DRFG+  RL F
Sbjct: 139 ELLYPAMEDFYLDLTVGKQQTARPRRLKLNRFTLVGATTRAGALTSPLRDRFGLVQRLRF 198

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  E+L+ IVQRGA L    +T EAA EI  RSRGTPRIA RLL+RVRD+A V H   IT
Sbjct: 199 YHPEELQQIVQRGAALLQTPITPEAALEIGRRSRGTPRIALRLLKRVRDYAAVKHDGRIT 258

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            ++A AAL  L +D  G D  D R L ++  ++ GGPVGIET++A   E    IE++ EP
Sbjct: 259 LDVARAALELLHVDPAGLDGSDRRLLRVMIESYQGGPVGIETLAAATGEDVQTIEEVYEP 318

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           Y++Q G++QRTPRGR+  P AWQHLG   P 
Sbjct: 319 YLLQMGYLQRTPRGRVATPRAWQHLGYTAPE 349


>gi|331269239|ref|YP_004395731.1| Holliday junction DNA helicase RuvB [Clostridium botulinum
           BKT015925]
 gi|329125789|gb|AEB75734.1| Holliday junction DNA helicase RuvB [Clostridium botulinum
           BKT015925]
          Length = 337

 Score =  358 bits (918), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 174/332 (52%), Positives = 236/332 (71%), Gaps = 1/332 (0%)

Query: 4   REGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
            + ++S +  +ED D+   LRP  L E+ GQ +    L +FIEAAK R EALDHVL  GP
Sbjct: 2   EDRIVSASYKREDFDVEHSLRPEKLSEYIGQSKVKEKLNIFIEAAKMRQEALDHVLLYGP 61

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++A+E+G   + TSGP I +AGD+AA+LT+L D DVLFIDEIHRL+  VE
Sbjct: 62  PGLGKTTLANIIAKEMGGTLKVTSGPAIERAGDMAAILTSLNDYDVLFIDEIHRLNRTVE 121

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EI+YPAMED  LD+++G+G +A+S++++L +FTLI ATTRVGLLT+PL+DRFG+   + F
Sbjct: 122 EIMYPAMEDNVLDIVIGKGAAAKSIRLDLPKFTLIGATTRVGLLTSPLRDRFGVLSAMEF 181

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  ++LK IV R +K+ G+  T++AA EIA RSRGTPRIA R+L+RVRD+ +V     I 
Sbjct: 182 YNEDELKEIVLRSSKILGVVTTEDAAFEIARRSRGTPRIANRILKRVRDYCDVKGNGIID 241

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             IA +AL  L ID  GFD +D + L  I  NF GGPVG+ET++  + E  D I+D+ EP
Sbjct: 242 INIAQSALELLEIDGEGFDNIDNKILEAIIDNFKGGPVGLETLAYFVGEELDTIQDVYEP 301

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           Y++Q+GF+ R PRGR     A++HL  D   +
Sbjct: 302 YLLQKGFVIRMPRGRKATEKAYRHLKRDFNEQ 333


>gi|213963690|ref|ZP_03391941.1| holliday junction DNA helicase RuvB [Capnocytophaga sputigena
           Capno]
 gi|213953685|gb|EEB65016.1| holliday junction DNA helicase RuvB [Capnocytophaga sputigena
           Capno]
          Length = 341

 Score =  358 bits (918), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 174/322 (54%), Positives = 227/322 (70%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           +QE      LRP + ++F GQ     NLKVF++AA  R EALDH LF GPPGLGKTTLA 
Sbjct: 14  AQELDIERALRPLSFDDFAGQEAVLENLKVFVKAANMRHEALDHTLFHGPPGLGKTTLAH 73

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++A ELGV  + TSGPV+ K GDLA LLTNL++RDVLFIDEIHRLS +VEE LY AMED+
Sbjct: 74  ILANELGVGIKITSGPVLDKPGDLAGLLTNLQERDVLFIDEIHRLSPVVEEYLYSAMEDY 133

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           ++D+M+  GP+AR+V+INL+ FTLI ATTR GLLT P++ RFGI  RL +Y  E L  IV
Sbjct: 134 KIDIMIESGPNARTVQINLNPFTLIGATTRSGLLTAPMRARFGIQSRLQYYSTELLADIV 193

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           QR A +  + ++ EAA E+A RSRGTPRIA  LLRR+RDFA++     I   I    L  
Sbjct: 194 QRSASILKVPISMEAAIELASRSRGTPRIANALLRRIRDFAQIKGNGEIDIAITRFGLKA 253

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D  G D++D + L+ +   F GGPVGI T++  +SE  + IE++ EP++IQ+GFI R
Sbjct: 254 LNVDAHGLDEMDNKILSTLIDKFKGGPVGITTLATAVSESAETIEEVYEPFLIQEGFIVR 313

Query: 313 TPRGRLLMPIAWQHLGIDIPHR 334
           TPRGR +  +A++HLG   P +
Sbjct: 314 TPRGREVTELAYKHLGKVHPAK 335


>gi|168187974|ref|ZP_02622609.1| holliday junction DNA helicase RuvB [Clostridium botulinum C str.
           Eklund]
 gi|169294185|gb|EDS76318.1| holliday junction DNA helicase RuvB [Clostridium botulinum C str.
           Eklund]
          Length = 337

 Score =  358 bits (918), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 172/332 (51%), Positives = 235/332 (70%), Gaps = 1/332 (0%)

Query: 4   REGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
            E ++S +  +ED D+   LRP  L E+ GQ +    L +F +AAK R EALDHVL  GP
Sbjct: 2   EERMISASYKKEDFDVEHSLRPEKLSEYIGQDKVKEKLSIFTKAAKMRKEALDHVLLYGP 61

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++ARE+G   + TSGP I + GD+AA+LT+L D DVLFIDEIHRL+  VE
Sbjct: 62  PGLGKTTLANIIAREMGGTLKVTSGPAIERPGDMAAILTSLNDYDVLFIDEIHRLNRTVE 121

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EI+YPAMED  LD+++G+G +A+S++++L +FTLI ATTRVGLLT+PL+DRFG+   + F
Sbjct: 122 EIMYPAMEDNVLDIVIGKGAAAKSIRLDLPKFTLIGATTRVGLLTSPLRDRFGVLSAMEF 181

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  ++LK I+ R +K+ G+  T++AA EIA RSRGTPRIA RLL+RVRD+ +V     I 
Sbjct: 182 YNEDELKEIILRSSKILGVVTTEDAAFEIARRSRGTPRIANRLLKRVRDYCDVKGDGVID 241

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             I+  AL  L ID+ GFD++D + L  I  NF GGPVG+ET++  + E  D I+D+ EP
Sbjct: 242 INISKNALNLLEIDEEGFDRIDNKILEAIIDNFKGGPVGLETLAYFIGEELDTIQDVYEP 301

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           Y++Q+GFI R PRGR     A++HL  +   +
Sbjct: 302 YLLQKGFIVRMPRGRKATEKAYRHLKREFKEQ 333


>gi|319937622|ref|ZP_08012026.1| Holliday junction DNA helicase B [Coprobacillus sp. 29_1]
 gi|319807264|gb|EFW03876.1| Holliday junction DNA helicase B [Coprobacillus sp. 29_1]
          Length = 334

 Score =  358 bits (918), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 163/329 (49%), Positives = 229/329 (69%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD E  +    S  + + + LRP++ +E+ GQ    SNLKVF+ AAK R E LDHVL  G
Sbjct: 1   MDYERDVLDVKSHNEDEENQLRPQSFDEYVGQSHLKSNLKVFVGAAKLRDETLDHVLLYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTT++ ++A E+G + ++T+GP I K GDL A+LT+LE  DVLFIDEIHRL+ +V
Sbjct: 61  PPGLGKTTMSMIIANEMGTHLKTTTGPSIEKTGDLVAILTSLEPGDVLFIDEIHRLNKVV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILYPAMEDF +D+++G+  S RS++I+L  FTL+ ATTR G L+ PL+DRFGI  +L 
Sbjct: 121 EEILYPAMEDFCVDVVIGKEASTRSIRIDLPPFTLVGATTRAGDLSAPLRDRFGIVSKLE 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y  ++L  I+ R +++  + +  EA  E+A RSRGTPRIA RL RRVRDFA+      I
Sbjct: 181 YYNEDELTQIINRTSRVYHMDMDLEAQSELAKRSRGTPRIANRLFRRVRDFAQYNGDDII 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T+     AL RL +D++G D +D +Y+  I   F GGPVG+E+++A + E    +ED+ E
Sbjct: 241 TKARTVEALQRLKVDELGLDDVDHKYILGIIHRFRGGPVGLESVAASIGEEPMTLEDVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           PY++Q G I+RTPRGR++  +A+QH  I 
Sbjct: 301 PYLLQTGLIKRTPRGRVVTELAYQHFHIS 329


>gi|118444048|ref|YP_877906.1| Holliday junction DNA helicase RuvB [Clostridium novyi NT]
 gi|166231486|sp|A0PZV4|RUVB_CLONN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|118134504|gb|ABK61548.1| Holliday junction DNA helicase RuvB [Clostridium novyi NT]
          Length = 337

 Score =  358 bits (918), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 173/332 (52%), Positives = 233/332 (70%), Gaps = 1/332 (0%)

Query: 4   REGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
            + ++S +   ED D+   LRP  L E+ GQ +    L +F +AAK R EALDHVL  GP
Sbjct: 2   EDRMVSASYKNEDFDVEHSLRPEKLSEYIGQDKVKEKLSIFTKAAKMRNEALDHVLLYGP 61

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++ARE+G   + TSGP I + GD+AA+LT+L D DVLFIDEIHRL+  VE
Sbjct: 62  PGLGKTTLANIIAREMGGTLKVTSGPAIERPGDMAAILTSLNDYDVLFIDEIHRLNRTVE 121

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EI+YPAMED  LD+++G+G +A+S++++L +FTLI ATTRVGLLT+PL+DRFG+   + F
Sbjct: 122 EIMYPAMEDNVLDIVIGKGAAAKSIRLDLPKFTLIGATTRVGLLTSPLRDRFGVLSAMEF 181

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  ++LK I+ R +K+ G+  T+EAA EIA RSRGTPRIA RLL+RVRD+ +V     I 
Sbjct: 182 YNEDELKEIILRSSKILGVVTTEEAAFEIARRSRGTPRIANRLLKRVRDYCDVKGDGVID 241

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             IA  AL  L ID  GFD++D + L  I  NF GGPVG+ET++  + E  D I+D+ EP
Sbjct: 242 INIAKNALSLLEIDGEGFDKIDNKILEAIIDNFKGGPVGLETLAYFIGEELDTIQDVYEP 301

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           Y++Q+GFI R PRGR     A++HL  +   +
Sbjct: 302 YLLQKGFIVRMPRGRKATEKAYRHLKREFKEQ 333


>gi|117923787|ref|YP_864404.1| Holliday junction DNA helicase RuvB [Magnetococcus sp. MC-1]
 gi|171460774|sp|A0L4V5|RUVB_MAGSM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|117607543|gb|ABK42998.1| Holliday junction DNA helicase subunit RuvB [Magnetococcus sp.
           MC-1]
          Length = 343

 Score =  358 bits (918), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 193/329 (58%), Positives = 242/329 (73%), Gaps = 1/329 (0%)

Query: 6   GLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
            ++S +    E    + LRP+ L+EF GQ    +NL VF+ AAK RAEA+DH+L  GPPG
Sbjct: 7   RMISGDPELGEPFQENGLRPKYLKEFVGQKPLKANLTVFLHAAKQRAEAIDHILLHGPPG 66

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTT+AQ++A E+GV  RSTSGPVI KAGDLAALLTNL   DVLF+DEIHRLS  VEEI
Sbjct: 67  LGKTTMAQIIAWEMGVGLRSTSGPVIDKAGDLAALLTNLNPGDVLFVDEIHRLSPAVEEI 126

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPAMEDFQLDLM+GEGPSARSVKI+L RFTL+ ATTR G+LT+PL+DRFGI  R+ FYE
Sbjct: 127 LYPAMEDFQLDLMIGEGPSARSVKIDLPRFTLVGATTRAGMLTSPLRDRFGILARMQFYE 186

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            ++L+ IV R A + G+ ++ + A EIA RSRGTPRIA RLLRRVRDFA+VA    I ++
Sbjct: 187 PDELQQIVTRSASIMGIDISADGAFEIARRSRGTPRIANRLLRRVRDFAQVAGPGYIDKD 246

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +AD ALL L +D+ G D +D R L  +   F GGPVG++T++A + E R  IED+IEPY+
Sbjct: 247 LADRALLALEVDRNGLDNMDHRLLKALLDKFAGGPVGLDTLAAAIGEERSTIEDVIEPYL 306

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           I QG + RTPRGR     ++  +G   P 
Sbjct: 307 ILQGMLDRTPRGRKATHASYTAMGRTAPR 335


>gi|258543668|ref|YP_003189101.1| Holliday junction DNA helicase RuvB [Acetobacter pasteurianus IFO
           3283-01]
 gi|256634746|dbj|BAI00722.1| Holliday junction DNA helicase RuvB [Acetobacter pasteurianus IFO
           3283-01]
 gi|256637802|dbj|BAI03771.1| Holliday junction DNA helicase RuvB [Acetobacter pasteurianus IFO
           3283-03]
 gi|256640856|dbj|BAI06818.1| Holliday junction DNA helicase RuvB [Acetobacter pasteurianus IFO
           3283-07]
 gi|256643911|dbj|BAI09866.1| Holliday junction DNA helicase RuvB [Acetobacter pasteurianus IFO
           3283-22]
 gi|256646966|dbj|BAI12914.1| Holliday junction DNA helicase RuvB [Acetobacter pasteurianus IFO
           3283-26]
 gi|256650019|dbj|BAI15960.1| Holliday junction DNA helicase RuvB [Acetobacter pasteurianus IFO
           3283-32]
 gi|256653009|dbj|BAI18943.1| Holliday junction DNA helicase RuvB [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256656063|dbj|BAI21990.1| Holliday junction DNA helicase RuvB [Acetobacter pasteurianus IFO
           3283-12]
          Length = 358

 Score =  358 bits (918), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 206/330 (62%), Positives = 249/330 (75%), Gaps = 2/330 (0%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           +  +     +ED   S LRP+TL +FTGQ  +  NL +FI+AAK R +ALDHVL  GPPG
Sbjct: 8   DREIDAARREEDVGESTLRPQTLHDFTGQKASRENLSIFIKAAKQRGDALDHVLLHGPPG 67

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLAQ+VARELGV FR+TSGPVI +AGDLAA+LTNL+ RDVLFIDEIHRL   +EEI
Sbjct: 68  LGKTTLAQIVARELGVGFRATSGPVIQRAGDLAAILTNLQPRDVLFIDEIHRLQPAIEEI 127

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPAMEDFQLDL++GEGP+ARSV+I+L  FTL+AATTR GLL  PL+DRFGIP+RL FY 
Sbjct: 128 LYPAMEDFQLDLIIGEGPAARSVRIDLPPFTLVAATTRAGLLATPLRDRFGIPLRLVFYT 187

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA--EVAHAKTIT 242
            E+L  IV RGA+    A+T   A EIA RSRGTPRIAGRLLRRVRDFA   V     + 
Sbjct: 188 PEELCKIVARGAEKLDFALTLGGAMEIARRSRGTPRIAGRLLRRVRDFASVTVPAGVPVE 247

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            E+ADAAL RL +D +G D +D RYL  IA    GGPVG+ET++A L+E RD +ED+IEP
Sbjct: 248 AEVADAALKRLEVDALGLDAMDRRYLRRIAEYHHGGPVGVETLAAALAESRDTLEDVIEP 307

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           Y+IQ+G + RT RGR+L    W+HLG+  P
Sbjct: 308 YLIQEGLVLRTTRGRVLGERGWRHLGLTPP 337


>gi|325479576|gb|EGC82672.1| Holliday junction DNA helicase RuvB [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 335

 Score =  358 bits (918), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 169/330 (51%), Positives = 234/330 (70%), Gaps = 1/330 (0%)

Query: 3   DREGLLSRNVSQEDA-DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           + + ++S N   ED    + +RP+ L+++ GQ +    L +FI+++ +R E LDHVL  G
Sbjct: 4   ENDRIVSSNEQVEDLFAENSIRPKWLKDYIGQDKVKEKLDIFIKSSLSRNEPLDHVLLQG 63

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTL+ ++A ELGVN R TSGP I +  DLA++LTNL   DVLFIDEIHR++  V
Sbjct: 64  PPGLGKTTLSTIIANELGVNLRVTSGPAIERPSDLASILTNLSSGDVLFIDEIHRINRSV 123

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILY AMEDF LD++VG+GP+A+S++I+L +FTLI ATTR G+L+ PL+DRFG+ + LN
Sbjct: 124 EEILYSAMEDFVLDIIVGKGPNAQSIRIDLEKFTLIGATTRAGMLSAPLRDRFGVLLALN 183

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
            Y+ +DL TIV+R A++  + + ++ A EIA RSRGTPRIA RLL+RVRDFA V   + I
Sbjct: 184 LYDTKDLTTIVKRSAQILDIPIDEKGAIEIARRSRGTPRIANRLLKRVRDFAIVKADEKI 243

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
             + +   L  L ID MG D +D + +  +  NFGGGPVG++TI+A        IED+ E
Sbjct: 244 DYDTSKKGLELLEIDPMGLDTMDKKIILTMYDNFGGGPVGVDTIAASTGIENVTIEDVYE 303

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           PY++Q GFI RTPRGR+L   A++H G+ I
Sbjct: 304 PYLLQIGFISRTPRGRVLTRKAYEHYGLKI 333


>gi|295132462|ref|YP_003583138.1| Holliday junction DNA helicase B [Zunongwangia profunda SM-A87]
 gi|294980477|gb|ADF50942.1| Holliday junction DNA helicase B [Zunongwangia profunda SM-A87]
          Length = 340

 Score =  358 bits (918), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 184/329 (55%), Positives = 230/329 (69%), Gaps = 1/329 (0%)

Query: 1   MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M +       N S E+ DI   LRP + ++F GQ +   NLKVF+ AA  R+EALDH L 
Sbjct: 1   MNENLDATGENFSPEEFDIERALRPLSFDDFAGQEQVLDNLKVFVAAANLRSEALDHTLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A ELGV  + TSGPV+ K GDLA LLTNL++RD+LFIDEIHRLS 
Sbjct: 61  HGPPGLGKTTLAHILANELGVGLKITSGPVLDKPGDLAGLLTNLDERDILFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           IVEE LY AMED+++D+M+  GP+ARSV++NLS FTLI ATTR GLLT P++ RFGI  R
Sbjct: 121 IVEEYLYSAMEDYRIDIMIESGPNARSVQLNLSPFTLIGATTRSGLLTAPMRARFGISSR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y  E L  IVQR A++  + +T EAA EIA RSRGTPRIA  LLRRVRDFA++    
Sbjct: 181 LQYYSTELLSDIVQRSAQILKVPITMEAAIEIAGRSRGTPRIANALLRRVRDFAQIKGDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I   IA   L  L +D  G D++D R L  I   F GGPVGI T++  +SE  + IE++
Sbjct: 241 KIDIGIAKYGLKALNVDAHGLDEMDNRILETIIDKFKGGPVGITTLATAVSESAETIEEV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
            EP++IQQGFI RTPRGR +   A++HLG
Sbjct: 301 YEPFLIQQGFIYRTPRGREVTEAAYKHLG 329


>gi|255037439|ref|YP_003088060.1| Holliday junction DNA helicase RuvB [Dyadobacter fermentans DSM
           18053]
 gi|254950195|gb|ACT94895.1| Holliday junction DNA helicase RuvB [Dyadobacter fermentans DSM
           18053]
          Length = 341

 Score =  358 bits (918), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 175/326 (53%), Positives = 235/326 (72%), Gaps = 1/326 (0%)

Query: 10  RNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
            N+S  D DI   LRP + E+FTGQ +   NL++F++AA+ R +ALDHVL  GPPGLGKT
Sbjct: 11  ENLSNTDKDIERALRPLSFEDFTGQDKILENLRIFVQAARQRGDALDHVLLHGPPGLGKT 70

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           TL+ ++A ELG   + TSGPV+ K  DLA LLTNL++ DVLFIDEIHRL+ IVEE LY A
Sbjct: 71  TLSNIIANELGSGIKITSGPVLDKPSDLAGLLTNLQEHDVLFIDEIHRLNPIVEEYLYSA 130

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           MED+++D+M+  GP+ARS++I L+ FTLI ATTR G+LT+PL+ RFGI  RL +Y+ + L
Sbjct: 131 MEDYKIDIMLDSGPNARSIQIGLNPFTLIGATTRAGMLTSPLRARFGINARLEYYDAQLL 190

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
            +I++R A + G  + ++AA EIA RSRGTPRIA  LLRR RDFA+V     IT  IA+ 
Sbjct: 191 SSILKRSASILGTPLEEDAAFEIARRSRGTPRIANNLLRRTRDFAQVKGNGRITVAIAEM 250

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL  L +D+ G D++D R L+ I + F GGPVG+ TI+    E  D IE++ EP++IQ+G
Sbjct: 251 ALQALDVDQNGLDEMDNRILSTIIQKFKGGPVGLSTIATACGEEADTIEEVYEPFLIQEG 310

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIPHR 334
           +I+RT RGR +   A++HLGI   HR
Sbjct: 311 YIKRTSRGREVTEKAFRHLGILPRHR 336


>gi|257790729|ref|YP_003181335.1| Holliday junction DNA helicase RuvB [Eggerthella lenta DSM 2243]
 gi|257474626|gb|ACV54946.1| Holliday junction DNA helicase RuvB [Eggerthella lenta DSM 2243]
          Length = 351

 Score =  358 bits (918), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 174/330 (52%), Positives = 242/330 (73%), Gaps = 1/330 (0%)

Query: 4   REGLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           R   ++  ++++D A    LRP+ L ++ GQ +   +L + IEAA+AR + +DH+LF GP
Sbjct: 19  RSRAVTPTLTEDDLALDRSLRPKRLGDYLGQTKIKESLAILIEAAQARGDVVDHILFSGP 78

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA VVA EL  N ++TSGP I + GDLAA+LTNLE+ DVLFIDEIHRL+ +VE
Sbjct: 79  PGLGKTTLAAVVANELDANLKTTSGPAIERTGDLAAILTNLEEGDVLFIDEIHRLNRMVE 138

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPA+EDF LD++VG+GP+ARS++++L RFTL+ ATTR GLLT PL+DRFGI  RL +
Sbjct: 139 EVLYPALEDFALDIVVGKGPAARSIRLDLPRFTLVGATTRTGLLTGPLRDRFGIAFRLQY 198

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  E+L +IV+R A +  +A+ ++ A EIA RSRGTPR+A RLL+RVRD+A+V     I 
Sbjct: 199 YSPEELASIVRRSASILDVAIEEDGALEIARRSRGTPRLANRLLKRVRDWAQVRGDGVID 258

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            ++A  AL    +D +G D +D R L ++A  FGG PVG+ T+++ LSE  D +ED+ EP
Sbjct: 259 EDVAAQALSFFEVDALGLDAVDNRILELLAVQFGGRPVGLTTLASALSEDTDTLEDVYEP 318

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           Y++QQG + RTP+GR+    A+ HLGI +P
Sbjct: 319 YLMQQGLLVRTPKGRICTERAYDHLGIKVP 348


>gi|150009504|ref|YP_001304247.1| Holliday junction DNA helicase RuvB [Parabacteroides distasonis
           ATCC 8503]
 gi|166231508|sp|A6LG11|RUVB_PARD8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|149937928|gb|ABR44625.1| Holliday junction DNA helicase RuvB [Parabacteroides distasonis
           ATCC 8503]
          Length = 341

 Score =  357 bits (917), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 176/329 (53%), Positives = 234/329 (71%), Gaps = 1/329 (0%)

Query: 1   MMDREGLLSRNVSQEDAD-ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M D   +    + + + +  ++LRP +L +F+GQ +   NLKVF+ AA+ R EALDHVL 
Sbjct: 1   MEDDFDIRDARMPENEREYENVLRPLSLRDFSGQAKVVENLKVFVMAARMRKEALDHVLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTL+ ++A ELGV F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS 
Sbjct: 61  HGPPGLGKTTLSNIIANELGVGFKVTSGPVLDKPGDLAGVLTSLEKNDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           IVEE LY AMED+++D+++ +GPSARS++I+L+ FTLI ATTR GLLT+PL+ RFGI + 
Sbjct: 121 IVEEYLYSAMEDYRIDIVIDKGPSARSIQIDLAPFTLIGATTRSGLLTSPLRARFGINMH 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y++E L  IV R A +  +     AA EIA RSRGTPRIA  LLRRVRDFA+V    
Sbjct: 181 LEYYDMETLTKIVLRSANILNVKCELNAAREIASRSRGTPRIANALLRRVRDFAQVKGNG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I + IA  +L  L ID+ G DQ+D + LT I   F GGPVG+ TI+  L E    +E++
Sbjct: 241 DIDKAIACFSLEALNIDRYGLDQIDNKLLTTIIDKFKGGPVGLTTIATALGEDPGTLEEV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
            EP++I++GFI+RTPRGR +  +A+ HLG
Sbjct: 301 YEPFLIKEGFIKRTPRGREVTDLAYTHLG 329


>gi|227542216|ref|ZP_03972265.1| Holliday junction DNA helicase B [Corynebacterium glucuronolyticum
           ATCC 51866]
 gi|227182045|gb|EEI63017.1| Holliday junction DNA helicase B [Corynebacterium glucuronolyticum
           ATCC 51866]
          Length = 365

 Score =  357 bits (917), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 162/327 (49%), Positives = 224/327 (68%), Gaps = 1/327 (0%)

Query: 8   LSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           +S    + D D+   LRP++++EF GQ +    L++ +E AK R  A DHVL  GPPGLG
Sbjct: 33  VSPEKQETDHDLEVSLRPKSIDEFIGQDKVRKQLRLVLEGAKKRGSAPDHVLLSGPPGLG 92

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTT+A ++A+ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++   EE+LY
Sbjct: 93  KTTMAMIIAQELGTSLRMTSGPALERAGDLAAMLSNLMEGDVLFIDEIHRIARPAEEMLY 152

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            AMEDF++D++VG+GP A S+ + L+ FTL+ ATTR G+LT PL+DRFG    + FY  +
Sbjct: 153 MAMEDFRIDVIVGKGPGATSIPLELAPFTLVGATTRSGMLTGPLRDRFGFTAHMEFYSPK 212

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           DL ++V R AK+ G+ +  EAA EIA RSRGTPRIA RLLRRVRD+AEV     I  + A
Sbjct: 213 DLTSVVLRAAKILGVNIDKEAAAEIAGRSRGTPRIANRLLRRVRDYAEVHSDGHIDVDAA 272

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
             AL+   +D+ G D+LD   L  + +  GGGPVG+ T++  + E    +E++ EPY+++
Sbjct: 273 KTALVVFDVDEKGLDRLDRAVLNALIKGHGGGPVGVSTLAIAVGEEPSTVEEVCEPYLVR 332

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            G I RT RGR+    AWQHLG+  P 
Sbjct: 333 AGLISRTGRGRVATAAAWQHLGLTPPD 359


>gi|304320108|ref|YP_003853751.1| Holliday junction DNA helicase RuvB [Parvularcula bermudensis
           HTCC2503]
 gi|303299011|gb|ADM08610.1| Holliday junction DNA helicase RuvB [Parvularcula bermudensis
           HTCC2503]
          Length = 340

 Score =  357 bits (917), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 202/331 (61%), Positives = 246/331 (74%), Gaps = 1/331 (0%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M    L      QED     LRP  L +F GQ +  +NL +F+ AA+ R EA+DHVL  G
Sbjct: 1   MTEARLTDPQ-PQEDDQDRALRPTRLADFQGQAQVKANLSIFVNAARQRGEAMDHVLLHG 59

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA++VA ELGV FRSTSGPVI+KAGDLAA+LT L+  DVLFIDEIHRL+  V
Sbjct: 60  PPGLGKTTLARIVAEELGVGFRSTSGPVISKAGDLAAILTGLDPHDVLFIDEIHRLTPTV 119

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILYPAMEDF+LD+++GEGPSARSV I+L  FTLI ATTR GLL  PL DRFGIP+RL 
Sbjct: 120 EEILYPAMEDFRLDILIGEGPSARSVTIDLPPFTLIGATTRSGLLAKPLLDRFGIPLRLQ 179

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY  E+LK I+ RGA      +T E A EIA RSRGTPR+AGRLLRRVRD A V     I
Sbjct: 180 FYTEEELKGIILRGADRLSTPLTTEGAGEIARRSRGTPRVAGRLLRRVRDVATVEGTLPI 239

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T E+A  AL RL +D++G + LD RYL +I  +FGGGPVG++T++A L+E RDA+ED+IE
Sbjct: 240 TEEVATKALRRLDVDQLGLEMLDRRYLEIIVTHFGGGPVGVDTLAASLAEARDAVEDVIE 299

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           P+++QQG IQRTPRGR +   A++HLG+  P
Sbjct: 300 PFLLQQGLIQRTPRGRKVTDRAYRHLGLPPP 330


>gi|260576654|ref|ZP_05844641.1| Holliday junction DNA helicase RuvB [Rhodobacter sp. SW2]
 gi|259021139|gb|EEW24448.1| Holliday junction DNA helicase RuvB [Rhodobacter sp. SW2]
          Length = 344

 Score =  357 bits (917), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 206/334 (61%), Positives = 256/334 (76%), Gaps = 2/334 (0%)

Query: 2   MDREGLLSRNVSQEDA--DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M     L      EDA      LRP+ L +F GQ EA +NL+VFI++AK R EA+DH LF
Sbjct: 1   MTSNPTLRPEKLPEDAADLDRALRPQMLADFVGQAEARANLRVFIDSAKMRGEAMDHTLF 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLAQ++ARELGV FR TSGPV+A+AGDLAA+LTNLE RDVLFIDEIHRLS 
Sbjct: 61  HGPPGLGKTTLAQIMARELGVGFRMTSGPVLARAGDLAAILTNLEPRDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPA+EDF LDL++GEGP+AR+V+I+L  FTL+ ATTR+GLLT PL+DRFGIP R
Sbjct: 121 VVEEVLYPALEDFALDLVIGEGPAARTVRIDLQPFTLVGATTRLGLLTTPLRDRFGIPTR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY  ++L  IV RGA+L G+    +   EIA R+RGTPRIAGRLLRRV DF  V    
Sbjct: 181 LQFYTEDELDLIVTRGARLLGIPADPDGTREIARRARGTPRIAGRLLRRVVDFVLVEGDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            +T+ IAD AL RL +D +G D  D RY++++A N+GGGPVG+ETI A LSE RD+IE++
Sbjct: 241 RLTQAIADRALTRLGVDHLGLDGADRRYMSLLADNYGGGPVGVETIGAALSESRDSIEEV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           IEP+++QQG IQRTPRGR+L   AW+HLG++ P 
Sbjct: 301 IEPFLLQQGLIQRTPRGRMLAAKAWRHLGLEAPR 334


>gi|255013205|ref|ZP_05285331.1| Holliday junction DNA helicase RuvB [Bacteroides sp. 2_1_7]
          Length = 341

 Score =  357 bits (917), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 176/329 (53%), Positives = 234/329 (71%), Gaps = 1/329 (0%)

Query: 1   MMDREGLLSRNVSQEDAD-ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M D   +    + + + +  ++LRP +L +F+GQ +   NLKVF+ AA+ R EALDHVL 
Sbjct: 1   MEDDFDIRDARMPENEREYENVLRPLSLRDFSGQAKVVENLKVFVMAARMRKEALDHVLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTL+ ++A ELGV F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS 
Sbjct: 61  HGPPGLGKTTLSNIIANELGVGFKVTSGPVLDKPGDLAGVLTSLEKNDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           IVEE LY AMED+++D+++ +GPSARS++I+L+ FTLI ATTR GLLT+PL+ RFGI + 
Sbjct: 121 IVEEYLYSAMEDYRIDIVIDKGPSARSIQIDLAPFTLIGATTRSGLLTSPLRARFGINMH 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y++E L  IV R A +  +     AA EIA RSRGTPRIA  LLRRVRDFA+V    
Sbjct: 181 LEYYDMETLTKIVLRSANILNVKCELNAAREIASRSRGTPRIANALLRRVRDFAQVKGNG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I + IA  +L  L ID+ G DQ+D + LT I   F GGPVG+ TI+  L E    +E++
Sbjct: 241 DIDKAIACFSLEALNIDRYGLDQIDNKLLTTIIDKFQGGPVGLTTIATALGEDPGTLEEV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
            EP++I++GFI+RTPRGR +  +A+ HLG
Sbjct: 301 YEPFLIKEGFIKRTPRGREVTDLAYTHLG 329


>gi|198274019|ref|ZP_03206551.1| hypothetical protein BACPLE_00156 [Bacteroides plebeius DSM 17135]
 gi|198273097|gb|EDY97366.1| hypothetical protein BACPLE_00156 [Bacteroides plebeius DSM 17135]
          Length = 341

 Score =  357 bits (917), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 171/329 (51%), Positives = 234/329 (71%), Gaps = 1/329 (0%)

Query: 1   MMDREGLLSRNVSQEDAD-ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M ++  +     + ++ D  + LRP   E+F+GQ +   NL++F++AA+ RAEALDHVL 
Sbjct: 1   MEEQFDIRDYKPTGKERDFENALRPLQFEDFSGQDKVVDNLRIFVKAARLRAEALDHVLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTL+ ++A ELGV F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS 
Sbjct: 61  HGPPGLGKTTLSNIIANELGVGFKVTSGPVLDKPGDLAGVLTSLEPNDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE LY AMED+++D+M+ +GPSARS++I+L+ FTL+ ATTR GLLT PL+ RFGI + 
Sbjct: 121 VVEEYLYSAMEDYRIDIMIDKGPSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGINLH 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y+   L  I+ R A +  +    +AA EIA RSRGTPRIA  LLRRVRDFA+V  + 
Sbjct: 181 LEYYDDSVLSRIILRSAHILDVPCDADAAGEIASRSRGTPRIANALLRRVRDFAQVKGSG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  EIA  AL  L ID+ G D++D + L  I   F GGPVG+ TI+  L E    +E++
Sbjct: 241 RIDLEIARFALEALNIDQYGLDEIDNKILCTIIDKFKGGPVGLTTIATALGEDPGTLEEV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
            EP++I++GF++RTPRGR +  +A++HLG
Sbjct: 301 YEPFLIKEGFLKRTPRGREVTELAYKHLG 329


>gi|302389937|ref|YP_003825758.1| Holliday junction DNA helicase subunit RuvB [Thermosediminibacter
           oceani DSM 16646]
 gi|302200565|gb|ADL08135.1| Holliday junction DNA helicase subunit RuvB [Thermosediminibacter
           oceani DSM 16646]
          Length = 338

 Score =  357 bits (917), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 177/329 (53%), Positives = 235/329 (71%), Gaps = 2/329 (0%)

Query: 4   REGLLSRNV--SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           +E L++  +  + E      LRP + +++ GQ +   +LK+F++AA  R E LDHVL  G
Sbjct: 2   KERLVTPVLKGTDESEFEVGLRPVSFDDYIGQDQVKESLKIFVKAALKRGEPLDHVLLYG 61

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++ARELGVN + TSGP I + GDLAA+LTNL +RD+LFIDEIHRL   V
Sbjct: 62  PPGLGKTTLAYIIARELGVNIKITSGPAIERPGDLAAVLTNLGERDLLFIDEIHRLHPAV 121

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILYPAMEDF LD+M+G+GP ARS+++NL  FTL+ ATTR G LT+PL+DRFGI   L+
Sbjct: 122 EEILYPAMEDFALDIMIGKGPGARSIRLNLRPFTLVGATTRAGALTSPLRDRFGIRCHLD 181

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY+ EDL  I+ R A++  + + ++AA  IA  SRGTPRIA RLL+R+RD+A+V     I
Sbjct: 182 FYKKEDLVRILLRSARILNIVLDEKAAERIAACSRGTPRIANRLLKRIRDYAQVKAEGVI 241

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T E+A   L  L +D  G DQ D R L  I   FGGGPVGI++++A L+E    IED+ E
Sbjct: 242 TEEVAVEGLKLLKVDSCGLDQDDRRLLETIIEKFGGGPVGIDSLAAALNEEASTIEDIYE 301

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           PY+IQ+G+I RT RGR+    A++HLGI+
Sbjct: 302 PYLIQEGYILRTARGRIASDKAYEHLGIE 330


>gi|307564788|ref|ZP_07627316.1| Holliday junction DNA helicase RuvB [Prevotella amnii CRIS 21A-A]
 gi|307346510|gb|EFN91819.1| Holliday junction DNA helicase RuvB [Prevotella amnii CRIS 21A-A]
          Length = 345

 Score =  357 bits (917), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 173/332 (52%), Positives = 230/332 (69%), Gaps = 1/332 (0%)

Query: 1   MMDREGLLSRNVSQEDAD-ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M +   +    +   + D  + LRP    +F+GQ +   NL VF+EAAK R E LDH L 
Sbjct: 1   MTEDFDIREERLRSAEKDFENALRPLKFSDFSGQDKVVENLSVFVEAAKYRGEPLDHTLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTL+ ++A ELGV F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS 
Sbjct: 61  HGPPGLGKTTLSNIIANELGVGFKITSGPVLDKPGDLAGILTSLEPNDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE LY AMED+++D+M+ +GPSARS++I L+ FTLI ATTR GLLT PL+ RFGI + 
Sbjct: 121 VVEEYLYSAMEDYRIDIMIDKGPSARSIQIELNPFTLIGATTRSGLLTAPLRARFGINMH 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y  E ++ I++R A L  + + DEAA EIA+RSRGTPRI   LLRRVRDFA+V    
Sbjct: 181 LEYYNAETIQRIIKRSAALLKVPIIDEAAEEIALRSRGTPRICNSLLRRVRDFAQVKGNG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           TIT  IA  +L  L ID+ G D++D + L  I   FGGGPVG+ TI+  + E    +E++
Sbjct: 241 TITPNIATMSLQALNIDQYGLDEIDNKILLTIIDKFGGGPVGVSTIATAIGEDSGTVEEV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
            EP++I +GFI+RT RGR+   +A++HLG + 
Sbjct: 301 YEPFLIMEGFIKRTTRGRVATQLAYEHLGRNY 332


>gi|227488787|ref|ZP_03919103.1| Holliday junction DNA helicase B [Corynebacterium glucuronolyticum
           ATCC 51867]
 gi|227091209|gb|EEI26521.1| Holliday junction DNA helicase B [Corynebacterium glucuronolyticum
           ATCC 51867]
          Length = 365

 Score =  357 bits (917), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 162/327 (49%), Positives = 223/327 (68%), Gaps = 1/327 (0%)

Query: 8   LSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           +S    + D D+   LRP++++EF GQ +    L++ +E AK R  A DHVL  GPPGLG
Sbjct: 33  VSPEKQETDHDLEVSLRPKSIDEFIGQDKVRKQLRLVLEGAKKRGSAPDHVLLSGPPGLG 92

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTT+A ++A+ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++   EE+LY
Sbjct: 93  KTTMAMIIAQELGTSLRMTSGPALERAGDLAAMLSNLMEGDVLFIDEIHRIARPAEEMLY 152

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            AMEDF++D++VG+GP A S+ + L+ FTL+ ATTR G+LT PL+DRFG    + FY  +
Sbjct: 153 MAMEDFRIDVIVGKGPGATSIPLELAPFTLVGATTRSGMLTGPLRDRFGFTAHMEFYSPK 212

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           DL  +V R AK+ G+ +  EAA EIA RSRGTPRIA RLLRRVRD+AEV     I  + A
Sbjct: 213 DLTAVVLRAAKILGVNIDKEAAAEIAGRSRGTPRIANRLLRRVRDYAEVHSDGHIDVDAA 272

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
             AL+   +D+ G D+LD   L  + +  GGGPVG+ T++  + E    +E++ EPY+++
Sbjct: 273 KTALVVFDVDEKGLDRLDRAVLNALIKGHGGGPVGVSTLAIAVGEEPSTVEEVCEPYLVR 332

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            G I RT RGR+    AWQHLG+  P 
Sbjct: 333 AGLISRTGRGRVATAAAWQHLGLTPPD 359


>gi|253682370|ref|ZP_04863167.1| holliday junction DNA helicase RuvB [Clostridium botulinum D str.
           1873]
 gi|253562082|gb|EES91534.1| holliday junction DNA helicase RuvB [Clostridium botulinum D str.
           1873]
          Length = 337

 Score =  357 bits (917), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 176/332 (53%), Positives = 236/332 (71%), Gaps = 1/332 (0%)

Query: 4   REGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
            + ++S +  +ED D+   LRP  L E+ GQ +    L +FIEAAK R E+LDHVL  GP
Sbjct: 2   EDRIVSASYKREDFDVEHSLRPEKLTEYIGQSKVKEKLSIFIEAAKIRQESLDHVLLYGP 61

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++ARE+G   + TSGP I +AGD+AA+LT+L D DVLFIDEIHRL+  VE
Sbjct: 62  PGLGKTTLANIIAREMGGTLKVTSGPAIERAGDMAAILTSLNDYDVLFIDEIHRLNRTVE 121

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EI+YPAMED  LD+++G+G +A+S++++L +FTLI ATTRVGLLT+PL+DRFG+   + F
Sbjct: 122 EIMYPAMEDNVLDIVIGKGAAAKSIRLDLPKFTLIGATTRVGLLTSPLRDRFGVLSAMEF 181

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  ++LK IV R +K+  +  T++AA EIA RSRGTPRIA R+L+RVRD+ +V     I 
Sbjct: 182 YNEDELKEIVLRSSKILDVVTTEDAAFEIARRSRGTPRIANRILKRVRDYCDVKGNGIID 241

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             IA +AL  L IDK GFD +D R L  I  NF GGPVG+ET++  + E  D I+D+ EP
Sbjct: 242 INIAQSALELLEIDKEGFDNIDNRILEAIIDNFKGGPVGLETLAYFIGEELDTIQDVYEP 301

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           Y++Q+GFI R PRGR     A++HL  D   +
Sbjct: 302 YLLQKGFIIRMPRGRKATEKAYKHLKRDFKEQ 333


>gi|206890403|ref|YP_002248714.1| holliday junction DNA helicase RuvB [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|259495680|sp|B5YKE9|RUVB_THEYD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|206742341|gb|ACI21398.1| holliday junction DNA helicase RuvB [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 325

 Score =  357 bits (917), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 188/323 (58%), Positives = 241/323 (74%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +   +     LRP++L+EF GQ +   N++VFI+AA  R E LDHVLF GPPGLGKTTLA
Sbjct: 1   MENNELLDITLRPKSLKEFIGQKKIKDNIEVFIKAALIRQEPLDHVLFCGPPGLGKTTLA 60

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            V+A ELGVN +STSGPV+ +AGD+AA+LTNL DRD+LFIDEIHRL  +VEEILYPAMED
Sbjct: 61  TVIANELGVNIKSTSGPVLERAGDVAAILTNLSDRDILFIDEIHRLPRMVEEILYPAMED 120

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F LD++VG+GPSARS+KINL RFTLI ATTR GL+T+PL+DRFG+  RL FY  E+LK I
Sbjct: 121 FTLDIIVGQGPSARSIKINLPRFTLIGATTRTGLITSPLRDRFGVVFRLEFYNSEELKEI 180

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           V+R A++ G+ + + AA EIA RSRGTPR+A RLL+R+RDFA+V     I  +IA  AL+
Sbjct: 181 VKRSARILGILIEENAATEIARRSRGTPRVANRLLKRIRDFAQVKDKDIIDLQIAQEALI 240

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            + +D  G D +D + L  I   F GGP GIE+I+A L E +D IED+ EPY++Q+GFI+
Sbjct: 241 AMDVDDYGLDDMDRKILLTIIEKFNGGPAGIESIAASLREDKDTIEDVYEPYLMQEGFIE 300

Query: 312 RTPRGRLLMPIAWQHLGIDIPHR 334
           RT RGR+    A++ L   IP R
Sbjct: 301 RTARGRVATRFAYEVLKRKIPER 323


>gi|301311707|ref|ZP_07217632.1| holliday junction DNA helicase RuvB [Bacteroides sp. 20_3]
 gi|300830267|gb|EFK60912.1| holliday junction DNA helicase RuvB [Bacteroides sp. 20_3]
          Length = 341

 Score =  357 bits (917), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 176/329 (53%), Positives = 234/329 (71%), Gaps = 1/329 (0%)

Query: 1   MMDREGLLSRNVSQEDAD-ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M D   +    + + + +  ++LRP +L +F+GQ +   NLKVF+ AA+ R EALDHVL 
Sbjct: 1   MEDDFDIRDARMPENEREYENVLRPLSLRDFSGQAKVVENLKVFVMAARMRKEALDHVLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTL+ ++A ELGV F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS 
Sbjct: 61  HGPPGLGKTTLSNIIANELGVGFKVTSGPVLDKPGDLAGVLTSLEKNDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           IVEE LY AMED+++D+++ +GPSARS++I+L+ FTLI ATTR GLLT+PL+ RFGI + 
Sbjct: 121 IVEEYLYSAMEDYRIDIVIDKGPSARSIQIDLAPFTLIGATTRSGLLTSPLRARFGINMH 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y++E L  IV R A +  +     AA EIA RSRGTPRIA  LLRRVRDFA+V    
Sbjct: 181 LEYYDMETLTKIVLRSANILNVKCELNAAREIASRSRGTPRIANALLRRVRDFAQVKGNG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I + IA  +L  L ID+ G DQ+D + LT I   F GGPVG+ TI+  L E    +E++
Sbjct: 241 DIDKAIACFSLEALNIDRYGLDQIDNKLLTTIIDKFQGGPVGLTTIATALGEDPGTLEEV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
            EP++I++GFI+RTPRGR +  +A+ HLG
Sbjct: 301 YEPFLIKEGFIKRTPRGREVTDLAYTHLG 329


>gi|58040114|ref|YP_192078.1| Holliday junction DNA helicase RuvB [Gluconobacter oxydans 621H]
 gi|81819055|sp|Q5FQC4|RUVB_GLUOX RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|58002528|gb|AAW61422.1| Holliday junction DNA helicase RuvB [Gluconobacter oxydans 621H]
          Length = 349

 Score =  357 bits (917), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 210/332 (63%), Positives = 254/332 (76%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D           ED     LRP TL +FTGQ  +  NL +FIEAA+AR EALDHVL  
Sbjct: 1   MSDDYRETDPTRQPEDMGEGSLRPETLADFTGQKASRENLAIFIEAARARNEALDHVLLH 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ+VARELGV FR+TSGPVI +AGDLAA+LTNL+ RDVLFIDEIHRL   
Sbjct: 61  GPPGLGKTTLAQIVARELGVGFRATSGPVIQRAGDLAAILTNLQPRDVLFIDEIHRLQPA 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EE+LYPAMEDFQLDL++GEGP+ARSV+I+L+ FTL+AATTR GLL  PL+DRFGIP+RL
Sbjct: 121 IEEVLYPAMEDFQLDLIIGEGPAARSVRIDLAPFTLVAATTRAGLLATPLRDRFGIPLRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  E+L+ IV RGA   G+ +TD+ A EIA RSRGTPRIAGRLLRRVRDFA V+    
Sbjct: 181 VFYTPEELRAIVSRGALKLGMRLTDDGAEEIARRSRGTPRIAGRLLRRVRDFALVSKHAV 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           + R +ADAAL RL +D+ G D +D RYL  IA +  GGPVG+ET++AGL+E RD +ED+I
Sbjct: 241 VDRALADAALGRLEVDERGLDAMDRRYLKRIAEHHHGGPVGVETLAAGLAEARDTLEDVI 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EPY+IQ+G + RT RGR+L    W+HLG+  P
Sbjct: 301 EPYLIQEGLVLRTARGRMLGEAGWRHLGLTPP 332


>gi|86140751|ref|ZP_01059310.1| Holliday junction DNA helicase RuvB [Leeuwenhoekiella blandensis
           MED217]
 gi|85832693|gb|EAQ51142.1| Holliday junction DNA helicase RuvB [Leeuwenhoekiella blandensis
           MED217]
          Length = 340

 Score =  357 bits (917), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 185/329 (56%), Positives = 232/329 (70%), Gaps = 1/329 (0%)

Query: 1   MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M +         S E+ DI   LRP + ++FTGQ +   NL++F++AA  R EALDH LF
Sbjct: 1   MNEHLDPSGEGFSHEEYDIERALRPLSFDDFTGQEQVIENLEIFVQAANGRGEALDHTLF 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A ELGVN + TSGPV+ K GDLA LLTNLE+RDVLFIDEIHRLS 
Sbjct: 61  HGPPGLGKTTLANILANELGVNIKVTSGPVLDKPGDLAGLLTNLEERDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           IVEE LY AMEDF++D+M+  GP+AR+V+I L+ FTLI ATTR GLLT P++ RFGI  R
Sbjct: 121 IVEEYLYSAMEDFKIDIMIESGPNARTVQITLNPFTLIGATTRSGLLTAPMRARFGISSR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y  E L TIVQR A++  + +  EAA EIA RSRGTPRIA  LLRRVRDFA++    
Sbjct: 181 LQYYNTELLTTIVQRSAEILNVPIHMEAAIEIAGRSRGTPRIANALLRRVRDFAQIKGNG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           TI  EIA  +L  L +D  G D++D + L  I   F GGPVGI T++  +SE  + IE++
Sbjct: 241 TIDIEIARFSLKALNVDAHGLDEMDNKILATIIDKFKGGPVGITTLATAVSESAETIEEV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
            EP++IQQGFI RTPRGR +   A+ HL 
Sbjct: 301 YEPFLIQQGFIVRTPRGREVTEAAYTHLN 329


>gi|326693301|ref|ZP_08230306.1| Holliday junction DNA helicase RuvB [Leuconostoc argentinum KCTC
           3773]
          Length = 355

 Score =  357 bits (917), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 165/333 (49%), Positives = 222/333 (66%), Gaps = 2/333 (0%)

Query: 3   DREGLLSRNVSQ--EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           D + L+    +   E  D   LRP+ L E+ GQ      L V+I AAK R EALDHVL  
Sbjct: 21  DADRLIRDAAANQAEQHDELSLRPQFLREYIGQTALKEELSVYIAAAKQRQEALDHVLLF 80

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A E+GV+ ++TSGP I K GDL ALL  LE  D+LFIDEIHRL   
Sbjct: 81  GPPGLGKTTLAMIIANEMGVHIKTTSGPAIEKPGDLVALLNELEPGDILFIDEIHRLPTN 140

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EEI+Y AMED+ +D+MVG+GP+AR+V   L  FTLI ATTR G+L+ PL+DRFGI   +
Sbjct: 141 IEEIMYSAMEDYFVDIMVGQGPTARAVHFPLPPFTLIGATTRPGMLSKPLRDRFGIINAM 200

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y   +L+ IV R A +    +    A E+A+RSRGTPRIA RLL+RVRDFA+V     
Sbjct: 201 VYYTPAELQEIVVRSADIFQAPIKPAGAYEVALRSRGTPRIANRLLKRVRDFAQVQGLDA 260

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I + I D AL +L +D  G D+ D ++L  +   + GGPVG+ TI+A + E  + +E ++
Sbjct: 261 IDQGIVDVALDKLRVDNRGLDETDHKFLGTMVAYYNGGPVGLNTIAANIGEEAETLESMV 320

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY++Q GF+QRTPRGR++   A++HL +  P 
Sbjct: 321 EPYLLQIGFLQRTPRGRVVTEAAYKHLNLPYPE 353


>gi|260663387|ref|ZP_05864278.1| Holliday junction DNA helicase RuvB [Lactobacillus fermentum
           28-3-CHN]
 gi|260552239|gb|EEX25291.1| Holliday junction DNA helicase RuvB [Lactobacillus fermentum
           28-3-CHN]
          Length = 339

 Score =  357 bits (916), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 172/333 (51%), Positives = 226/333 (67%), Gaps = 2/333 (0%)

Query: 3   DREGLLSRNVS--QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           D + +LS  V+  QE  D   LRP+TL  + GQ      L V+I+AAK+R EALDHVL  
Sbjct: 4   DFDDVLSNEVTDDQEGRDEVSLRPQTLATYIGQARIKHELAVYIQAAKSRGEALDHVLLY 63

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA V+A E+ V  ++TSGP I K GDL ALL +L+  +VLFIDEIHRL  +
Sbjct: 64  GPPGLGKTTLAMVIANEMQVAIKTTSGPAIEKPGDLVALLNDLKPGNVLFIDEIHRLPKV 123

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LY AMEDF +D++VGEGP+A  V   L  FTLI ATTR GLL  PL+DRFGI  R+
Sbjct: 124 VEEMLYSAMEDFYIDIVVGEGPTAHPVHFPLPPFTLIGATTRAGLLAAPLRDRFGIVARM 183

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           ++Y   +L  I+ R A +    + ++ A E+A+RSRGTPRIA RLL+RVRDFA+V     
Sbjct: 184 DYYTTTELSQIIDRSATIFNTKIQEDGAHELALRSRGTPRIANRLLKRVRDFAQVGGQAA 243

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I     D AL  LA+D  G D++D + LT +  ++ GGPVGI TI+A + E  + IE++ 
Sbjct: 244 IDPATVDRALDLLAVDDQGLDEIDRKLLTTMIEHYHGGPVGIRTIAANIGEEVNTIEEMY 303

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY++Q GF+ RTPRGR++ P A++HL I    
Sbjct: 304 EPYLLQIGFLMRTPRGRVVTPAAYEHLKIPFDQ 336


>gi|260102900|ref|ZP_05753137.1| crossover junction endoribonuclease subunit B [Lactobacillus
           helveticus DSM 20075]
 gi|260083289|gb|EEW67409.1| crossover junction endoribonuclease subunit B [Lactobacillus
           helveticus DSM 20075]
 gi|328462818|gb|EGF34685.1| Holliday junction DNA helicase RuvB [Lactobacillus helveticus MTCC
           5463]
          Length = 338

 Score =  357 bits (916), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 168/335 (50%), Positives = 229/335 (68%), Gaps = 3/335 (0%)

Query: 1   MMDREGLLSR---NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M++ E  ++      S+E+A    LRP+TL+++ GQ      + ++I+AAK R EALDHV
Sbjct: 1   MVENEDAVTSGEVENSEEEAMELSLRPQTLDQYLGQKRVKKEMSIYIKAAKQRDEALDHV 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTLA V+A ELGV+ +STSGP I KAGDL ALL++L+  DVLFIDEIHRL
Sbjct: 61  LLYGPPGLGKTTLAFVIANELGVHLKSTSGPAIEKAGDLVALLSDLDPGDVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           +  VEE+LY AMED+ +D+++GEG +  +V + L  FTLI ATT  G L+ PL+DRFGI 
Sbjct: 121 AKPVEEVLYSAMEDYYIDIVIGEGQTTHAVHVPLPPFTLIGATTLAGQLSAPLRDRFGIV 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
             + +Y I++L+ IVQR + +   ++  EAA E+A RSRGTPR+A R L+RVRDFAEV  
Sbjct: 181 EHMQYYTIDELEKIVQRSSDVFHTSIAPEAAHELARRSRGTPRVANRFLKRVRDFAEVKG 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
            KTI+    + AL +L +D  G DQ D R L  +   + GGPVGI T++A + E  + IE
Sbjct: 241 EKTISLATTEGALKQLQVDDEGLDQTDRRLLRTMIEGYNGGPVGIRTLAANVGEDMETIE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
            L EPY++Q GFI   PRGR++   A+  LG+ +P
Sbjct: 301 SLYEPYLLQHGFILLGPRGRMVTDKAYLQLGLPVP 335


>gi|284040070|ref|YP_003390000.1| Holliday junction DNA helicase RuvB [Spirosoma linguale DSM 74]
 gi|283819363|gb|ADB41201.1| Holliday junction DNA helicase RuvB [Spirosoma linguale DSM 74]
          Length = 342

 Score =  357 bits (916), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 171/322 (53%), Positives = 223/322 (69%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           + +      LRP + E+FTGQ +A  NL+VF++AA  R EALDHVL  GPPGLGKTTL+ 
Sbjct: 15  ATDKEIERALRPLSFEDFTGQAKALENLEVFVKAAMQRGEALDHVLLHGPPGLGKTTLSH 74

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++A EL    + TSGPV+ K  DLA LLTNL+  DVLFIDEIHRL+ IVEE LY AMED+
Sbjct: 75  IIANELSAGIKMTSGPVLDKPSDLAGLLTNLQPNDVLFIDEIHRLNPIVEEYLYSAMEDY 134

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           ++D+M+  GP+AR+V+I L+ FTLI ATTR G+LT PL+ RFGI  RL +Y+ + L TIV
Sbjct: 135 KIDIMLDSGPNARTVQIKLNPFTLIGATTRAGMLTAPLRARFGISSRLEYYDAQLLTTIV 194

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           QR A + G  + +  A EIA RSRGTPRIA  LLRR RDFA+V     I  +IA+ AL  
Sbjct: 195 QRSAAILGTPIDETGAYEIARRSRGTPRIANNLLRRTRDFAQVKGNGYINVDIAEIALSA 254

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D+ G D++D R L  I   F GGPVG+ TI+    E  + IE++ EP++IQ+GF++R
Sbjct: 255 LEVDQNGLDEMDNRILLTIIEKFKGGPVGLSTIATACGEESETIEEVYEPFLIQEGFLKR 314

Query: 313 TPRGRLLMPIAWQHLGIDIPHR 334
           T RGR     A+ HLGI  P++
Sbjct: 315 TSRGREATERAYIHLGIVPPYK 336


>gi|167753239|ref|ZP_02425366.1| hypothetical protein ALIPUT_01510 [Alistipes putredinis DSM 17216]
 gi|167659170|gb|EDS03300.1| hypothetical protein ALIPUT_01510 [Alistipes putredinis DSM 17216]
          Length = 338

 Score =  357 bits (916), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 172/329 (52%), Positives = 228/329 (69%), Gaps = 1/329 (0%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M  E  + RN+  +    + +RPR L+ F GQ +   NL++FI+AA  R ++LDHVL  G
Sbjct: 1   MSTEKNI-RNIESDLEFENQIRPRELDNFAGQEKIVDNLRIFIQAALMRGDSLDHVLLHG 59

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+    + TSGPV+ K GDLA LLTNL   DVLFIDEIHRLS +V
Sbjct: 60  PPGLGKTTLANIIANEMHAQLKVTSGPVLDKPGDLAGLLTNLNPGDVLFIDEIHRLSPLV 119

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE LY AMED+++D+++ +GPSARS++I L+ FTLI ATTR GLLT+PL+ RFGI   L 
Sbjct: 120 EEYLYSAMEDYKIDIVLDKGPSARSIQIELAPFTLIGATTRSGLLTSPLRARFGIQCHLE 179

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y+   LK IV R A++  +++  +AA EIA+RSRGTPRIA  LLRRVRDFA V     I
Sbjct: 180 YYDSSVLKGIVNRSARILDVSIDSDAALEIALRSRGTPRIANALLRRVRDFAMVKGEGHI 239

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
             +I   AL  L ID  G DQ+D + L+ I   FGGGPVG+ TI+  +SE    IE++ E
Sbjct: 240 DLDITRFALTALNIDSRGLDQMDNKILSTIIEKFGGGPVGLNTIATAVSEDAGTIEEVYE 299

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           P++I++GF++RTPRGR    +A+ HLG  
Sbjct: 300 PFLIKEGFLKRTPRGREATEMAYAHLGFS 328


>gi|34540304|ref|NP_904783.1| Holliday junction DNA helicase RuvB [Porphyromonas gingivalis W83]
 gi|44888376|sp|Q7MWU9|RUVB_PORGI RecName: Full=Holliday junction DNA helicase ruvB
 gi|34396616|gb|AAQ65682.1| Holliday junction DNA helicase RuvB [Porphyromonas gingivalis W83]
          Length = 343

 Score =  357 bits (916), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 172/321 (53%), Positives = 229/321 (71%), Gaps = 1/321 (0%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E    + LRP T + F+GQ +   NL +F+ AA+ R EALDH L  GPPGLGKTTL+ ++
Sbjct: 18  EREVENKLRPLTFDSFSGQDKVVENLSIFVAAARLRGEALDHTLLHGPPGLGKTTLSNII 77

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A ELGV  + TSGPV+ K GDLA LL++LE  DVLFIDEIHRLS +VEE LY AMED+++
Sbjct: 78  ANELGVGLKITSGPVLDKPGDLAGLLSSLESNDVLFIDEIHRLSPVVEEYLYSAMEDYRI 137

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D+M+ +GPSARS++INLS FTL+ ATTR GLLT PL+ RFGI + L +Y++  +  IV+R
Sbjct: 138 DIMLDKGPSARSIQINLSPFTLVGATTRSGLLTAPLRARFGINLHLEYYDVHTITGIVER 197

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A++  ++ + +AA EIA RSRGTPRIA  LLRRVRDFA+V  +  I + IA  AL  L 
Sbjct: 198 SARILEVSCSHDAAVEIAGRSRGTPRIANALLRRVRDFAQVKGSGAIDKPIACYALEALN 257

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           ID+ G D +D + L  I   F GGPVG+ TI+  L E    IE++ EP++I++GF++RTP
Sbjct: 258 IDRYGLDNVDHKLLATIIDKFAGGPVGLSTIATALGEDPGTIEEVYEPFLIKEGFLKRTP 317

Query: 315 RGRLLMPIAWQHLGIDI-PHR 334
           RGR +  +A+ HLG +  PHR
Sbjct: 318 RGREVTELAYTHLGRNPRPHR 338


>gi|91216977|ref|ZP_01253940.1| Holliday junction DNA helicase B [Psychroflexus torquis ATCC
           700755]
 gi|91184848|gb|EAS71228.1| Holliday junction DNA helicase B [Psychroflexus torquis ATCC
           700755]
          Length = 340

 Score =  357 bits (916), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 175/329 (53%), Positives = 226/329 (68%), Gaps = 1/329 (0%)

Query: 1   MMDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M +       N   +D ++   LRP + ++F GQ     NL+VF++AA  R EALDH LF
Sbjct: 1   MNENLDATGSNFDNQDHEVDRALRPLSFDDFAGQSHVLENLQVFVKAANLRGEALDHTLF 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A EL    + TSGPVI K GDLA LLTNLE RDVLFIDEIHRLS 
Sbjct: 61  HGPPGLGKTTLAHILANELQTGIKITSGPVIDKPGDLAGLLTNLEPRDVLFIDEIHRLSS 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE LY AMEDF++D+M+  GP+ARSV+INL+ FTL+ ATTR GLLT P++ RFGI  R
Sbjct: 121 VVEEYLYSAMEDFKIDIMIESGPNARSVEINLNPFTLVGATTRSGLLTAPMRARFGISSR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y  E L  I+ R   + G+++T ++A EIA RSRGTPRIA  LLRRVRDFA++    
Sbjct: 181 LEYYSTELLSGIILRSGSILGVSITTDSAIEIAGRSRGTPRIANALLRRVRDFAQIKGNG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  EI+  +L  L +D  G D +D + L  I   F GGPVG+ T++  +SE  + IE++
Sbjct: 241 KIDMEISKYSLKALNVDAFGLDDMDNKILLTIIDKFKGGPVGLTTLATAVSENAETIEEV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
            EP++IQQGFI RTPRGR +   A++HLG
Sbjct: 301 YEPFLIQQGFINRTPRGREVTDSAYKHLG 329


>gi|56750714|ref|YP_171415.1| Holliday junction DNA helicase RuvB [Synechococcus elongatus PCC
           6301]
 gi|81820695|sp|Q5N474|RUVB_SYNP6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|56685673|dbj|BAD78895.1| holliday junction DNA helicase RuvB [Synechococcus elongatus PCC
           6301]
          Length = 375

 Score =  357 bits (916), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 167/332 (50%), Positives = 221/332 (66%), Gaps = 2/332 (0%)

Query: 4   REGLLSRNVSQEDA--DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           ++ L+    + E++      +RP+ L ++ GQ E    L + I AAK+R E+LDH+L  G
Sbjct: 28  QDSLVRPQAAPEESQRPEDQIRPQRLADYIGQPELKDVLGIAIAAAKSRQESLDHLLLYG 87

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTT+A V+A E+GV  R T+ P + +  D+  LL NL+  DVLFIDEIHRL  + 
Sbjct: 88  PPGLGKTTMALVLATEMGVQCRITTAPALERPRDIVGLLVNLQPGDVLFIDEIHRLPKVT 147

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILYPAMEDF+LD+ +G+G SAR+  I L  FTL+ ATT++G LT+PL+DRFG+  RL 
Sbjct: 148 EEILYPAMEDFRLDITIGKGQSARTPSITLHPFTLVGATTQIGALTSPLRDRFGLVQRLR 207

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FYE+E L  IVQR A+L    +    A EIA RSRGTPRIA RLLRRVRD+A V     I
Sbjct: 208 FYEVEALTDIVQRTARLLNTPLDQAGAEEIAKRSRGTPRIANRLLRRVRDYAAVKAPGPI 267

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T  IA  AL    +D  G D  D R L+ +  NFGGGPVG+ET++A   E    +E++ E
Sbjct: 268 TGAIAATALELYNVDPCGLDWTDRRLLSHLIENFGGGPVGLETLAAATGEDAQTVEEVYE 327

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           PY++Q G++QRTP GR+  P AW+HLG + P 
Sbjct: 328 PYLLQIGYLQRTPPGRVATPAAWRHLGYEPPQ 359


>gi|317488562|ref|ZP_07947107.1| Holliday junction DNA helicase RuvB [Eggerthella sp. 1_3_56FAA]
 gi|316912304|gb|EFV33868.1| Holliday junction DNA helicase RuvB [Eggerthella sp. 1_3_56FAA]
          Length = 360

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 174/330 (52%), Positives = 242/330 (73%), Gaps = 1/330 (0%)

Query: 4   REGLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           R   ++  ++++D A    LRP+ L ++ GQ +   +L + I AA+AR + +DH+LF GP
Sbjct: 28  RSRAVTPALTEDDLALDRSLRPKRLGDYLGQTKIKESLAILIGAAQARGDVVDHILFSGP 87

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA VVA ELG N ++TSGP I + GDLAA+LTNLE+ DVLFIDEIHRL+ +VE
Sbjct: 88  PGLGKTTLAAVVANELGANIKTTSGPAIERTGDLAAILTNLEEGDVLFIDEIHRLNRMVE 147

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPA+EDF LD++VG+GP+ARS++++L RFTL+ ATTR GLLT PL+DRFGI  RL +
Sbjct: 148 EVLYPALEDFALDIVVGKGPAARSIRLDLPRFTLVGATTRTGLLTGPLRDRFGIAFRLQY 207

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  E+L +IV+R A +  +A+ ++ A EIA RSRGTPR+A RLL+RVRD+A+V     I 
Sbjct: 208 YSPEELASIVRRSASILDVAIEEDGALEIARRSRGTPRLANRLLKRVRDWAQVRGDGVID 267

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            ++A  AL    +D +G D +D R L ++A  FGG PVG+ T+++ LSE  D +ED+ EP
Sbjct: 268 EDVAAQALSFFEVDALGLDAVDNRILELLAVQFGGRPVGLTTLASALSEDTDTLEDVYEP 327

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           Y++QQG + RTP+GR+    A+ HLGI +P
Sbjct: 328 YLMQQGLLVRTPKGRICTERAYDHLGIKVP 357


>gi|238926807|ref|ZP_04658567.1| crossover junction endoribonuclease subunit B [Selenomonas flueggei
           ATCC 43531]
 gi|238885339|gb|EEQ48977.1| crossover junction endoribonuclease subunit B [Selenomonas flueggei
           ATCC 43531]
          Length = 345

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 170/333 (51%), Positives = 231/333 (69%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M + E ++S      D     LRPR L E+ GQ    SNL  FI+AA +R EALDHVL  
Sbjct: 4   MGEDEEIISYEEQSTDGWQYSLRPRRLSEYIGQDRVKSNLSKFIQAALSRGEALDHVLLY 63

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A E+G NFR TS P I + GDLA+LLTNL++ DVLFIDEIHRLS  
Sbjct: 64  GPPGLGKTTLAAIIANEMGANFRQTSAPAIERQGDLASLLTNLQEHDVLFIDEIHRLSHH 123

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILY AMED  +D+++G+GPSARS++++L+ FTL+ ATT+ G L+ PL+DRFGI  RL
Sbjct: 124 VEEILYSAMEDHAIDIIIGKGPSARSIRLDLAPFTLVGATTKTGSLSAPLRDRFGIQARL 183

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y  + L  I++R A++  + +  + A EIA RSRGTPR+A R+L+RVRD A+VA  + 
Sbjct: 184 EYYTTDALLLIIERTAEILSVHIERDGALEIARRSRGTPRVANRILKRVRDIAQVAGEEI 243

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I+R +   AL  L +D+ G +  D   L ++ + F GGPVG++T++A LSE  + IED+ 
Sbjct: 244 ISRSVTIDALDTLEVDECGLESKDRYMLEVMIQKFSGGPVGLKTLAAALSEMTETIEDVY 303

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY+IQ GFI RT RGR++    ++H+G   P 
Sbjct: 304 EPYLIQLGFIARTARGRVVTQGGYEHIGAPYPR 336


>gi|332830260|gb|EGK02888.1| Holliday junction ATP-dependent DNA helicase ruvB [Dysgonomonas
           gadei ATCC BAA-286]
          Length = 340

 Score =  357 bits (915), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 176/329 (53%), Positives = 234/329 (71%), Gaps = 1/329 (0%)

Query: 1   MMDREGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M +   +   N++  E    + LRP T   F+GQ +   NL+VF+ AAK R E+LDH L 
Sbjct: 1   MEETFDIHRGNINDSEKEFENALRPLTFNSFSGQSKVVENLQVFVTAAKMRGESLDHTLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTL+ ++A ELGV F+ TSGPV+ K GDLA LLT+LE  DVLFIDEIHRLS 
Sbjct: 61  HGPPGLGKTTLSNIIANELGVGFKITSGPVLDKPGDLAGLLTSLEPNDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE LY AMED+++D+M+ +GPSARS++I+L+ FTLI ATTR GLLT+PL+ RFGI + 
Sbjct: 121 VVEEYLYSAMEDYRIDIMIDKGPSARSIQIDLNPFTLIGATTRSGLLTSPLRARFGINMH 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y+IE L  I+ R A +  +  + EAA EIA RSRGTPRIA  LLRRVRDFA+V  + 
Sbjct: 181 LEYYDIETLTNIILRSANILDVPTSKEAAVEIASRSRGTPRIANALLRRVRDFAQVKGSG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I + IA  +L  L IDK G D++D + L ++   F GGPVGI TI+  L E    IE++
Sbjct: 241 KIDKAIAAYSLEALNIDKYGLDEIDNKILLILIDKFKGGPVGISTIATALGEDGGTIEEV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
            EP++I++GF++RTPRGR +  +A++HLG
Sbjct: 301 YEPFLIKEGFMKRTPRGREVTELAYKHLG 329


>gi|241889923|ref|ZP_04777221.1| holliday junction DNA helicase RuvB [Gemella haemolysans ATCC
           10379]
 gi|241863545|gb|EER67929.1| holliday junction DNA helicase RuvB [Gemella haemolysans ATCC
           10379]
          Length = 333

 Score =  357 bits (915), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 171/331 (51%), Positives = 231/331 (69%), Gaps = 1/331 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M DR    S+N   E+ +   LRP+ L ++ GQ +  SNLK+FIEAAK R E LDH L  
Sbjct: 1   MEDRMVSASQNFG-EEREEQSLRPKFLSQYIGQEQIKSNLKIFIEAAKLRGEVLDHCLLY 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A E+ V  + TSGP I K+GDLAA+LT+LE  DVLFIDEIHR+S  
Sbjct: 60  GPPGLGKTTLATIIANEMEVGIKYTSGPAIEKSGDLAAILTSLEPGDVLFIDEIHRISRS 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EEILY AMEDF LD+++G+G  +RS++I L  FTL+ ATTR G LT PL+DRFG+  RL
Sbjct: 120 IEEILYSAMEDFYLDIVIGKGEESRSIRIELPPFTLVGATTRAGALTAPLRDRFGVHCRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY I +L+ I++R + +    + ++++ EIAMRSRGTPRIA RLL+RVRDFA+V +   
Sbjct: 180 EFYTISELQNIIERTSDIFECDIDEQSSYEIAMRSRGTPRIANRLLKRVRDFAQVKNDGV 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I +E+A  +L  L +D  G D +D + L  + + + G  VG+ETI+  + E    IED+ 
Sbjct: 240 IAKELAVESLDLLQVDAKGLDNIDYKILECLIKRYEGRAVGLETIAVTIGEESITIEDVY 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           EPY++++GFI+RTPRGR     A+QHLGI  
Sbjct: 300 EPYLVKEGFIERTPRGRRATSKAYQHLGIAY 330


>gi|292670919|ref|ZP_06604345.1| crossover junction endoribonuclease subunit B [Selenomonas noxia
           ATCC 43541]
 gi|292647540|gb|EFF65512.1| crossover junction endoribonuclease subunit B [Selenomonas noxia
           ATCC 43541]
          Length = 345

 Score =  357 bits (915), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 172/331 (51%), Positives = 231/331 (69%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           + E L+S      D     LRPR L E+ GQ +  SNL  FI+AA +R EALDHVL  GP
Sbjct: 6   EDEELISFEEQAADGWQYSLRPRRLNEYIGQDKVKSNLSKFIQAALSRGEALDHVLLYGP 65

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++A E+G NFR TS P I + GDLA+LLTNL+  D+LFIDEIHRLS  VE
Sbjct: 66  PGLGKTTLAAIIANEMGANFRQTSAPAIERQGDLASLLTNLQTNDILFIDEIHRLSHHVE 125

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILY AMED  +D+++G+GPSARS++++L+ FTLI ATT+ G L+ PL+DRFGI  RL +
Sbjct: 126 EILYSAMEDHAIDIIIGKGPSARSLRLDLAPFTLIGATTKTGALSAPLRDRFGIQSRLEY 185

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  E L  I++R A++  + +  E A EIA RSRGTPR+A R+L+RVRD A+VA  + ++
Sbjct: 186 YTSEALLLIIERTAEILSVHIEREGALEIARRSRGTPRVANRILKRVRDIAQVAGEQMVS 245

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           + +   AL  L +D+ G +  D   L ++ R F GGPVG++T++A LSE  + IED+ EP
Sbjct: 246 KAVTIEALEALEVDEKGLENKDRHMLEVMIRKFSGGPVGLKTLAAALSEMVETIEDVYEP 305

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           Y+IQ GFI RT RGR++    ++H+GI  P 
Sbjct: 306 YLIQLGFIARTARGRIVTRGGYEHMGIPFPQ 336


>gi|256827685|ref|YP_003151644.1| Holliday junction DNA helicase, RuvB subunit [Cryptobacterium
           curtum DSM 15641]
 gi|256583828|gb|ACU94962.1| Holliday junction DNA helicase, RuvB subunit [Cryptobacterium
           curtum DSM 15641]
          Length = 342

 Score =  357 bits (915), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 173/329 (52%), Positives = 243/329 (73%), Gaps = 1/329 (0%)

Query: 5   EGLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           + + S  ++++D A    LRPR LE++ GQ +   +L++ I+AA+ R + +DH+LF GPP
Sbjct: 9   QRIASVELTEDDLALDRSLRPRMLEDYLGQTKIKDSLRILIKAAQQREDVVDHILFSGPP 68

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA VVA E+G + ++TSGP IA+ GDLAA+LTNLED DVLFIDEIHR++ +VEE
Sbjct: 69  GLGKTTLATVVANEMGAHIKTTSGPAIARTGDLAAILTNLEDGDVLFIDEIHRMNRMVEE 128

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LYPA+ED+ LD++VG+GP+ARS++++L +FTLI ATTR GLLT PL+DRFGI  RLN+Y
Sbjct: 129 VLYPALEDYALDIVVGKGPAARSIRLDLPKFTLIGATTRTGLLTGPLRDRFGIAFRLNYY 188

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
             E+L  IV R A++  +++  E A EIA RSRGTPR+A RLL+RVRD+A+V    +I  
Sbjct: 189 TPEELSAIVVRSAEILEVSIDAEGALEIARRSRGTPRLANRLLKRVRDWAQVKGNGSIDE 248

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           + A  AL    +D +G D +D R L ++ + FGG PVG+ T+++ LSE  D++ED+ EPY
Sbjct: 249 DCAAEALSFFEVDSLGLDAVDNRILQLLCQQFGGQPVGLSTLASALSEDPDSLEDVYEPY 308

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++QQG + RTP+GR     A+ HLGI  P
Sbjct: 309 LMQQGLLIRTPKGRQATDRAYHHLGILAP 337


>gi|124006089|ref|ZP_01690925.1| holliday junction DNA helicase RuvB [Microscilla marina ATCC 23134]
 gi|123988266|gb|EAY27919.1| holliday junction DNA helicase RuvB [Microscilla marina ATCC 23134]
          Length = 345

 Score =  356 bits (914), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 177/320 (55%), Positives = 228/320 (71%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           + A    LRP   ++F+GQ +  +NLK+F++AAK R EALDHVL  GPPGLGKTTL+ ++
Sbjct: 20  DQAIEKALRPLNFDDFSGQGKIVTNLKIFVQAAKQREEALDHVLLHGPPGLGKTTLSNII 79

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A ELG   + TSGPV+ K  DLA LLTNLE  DVLFIDEIHRL+ IVEE LY AMED+++
Sbjct: 80  ANELGTEIKITSGPVLDKPSDLAGLLTNLETNDVLFIDEIHRLNPIVEEYLYSAMEDYKI 139

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D+M+  GPSAR+++I L+ FTLI ATTR GLLT+PL+ RFGI  RL +Y+ + L TIV+R
Sbjct: 140 DIMLDSGPSARTIQIALNPFTLIGATTRAGLLTSPLRARFGIKARLEYYDADLLSTIVRR 199

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
              + G  +  +A+ EIA RSRGTPRIA  LLRR RDFA+V    TIT EIA  AL  L 
Sbjct: 200 SCAILGTPIEHDASYEIAFRSRGTPRIANNLLRRTRDFAQVKGDGTITLEIAKMALDALE 259

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D+ G D++D R LT I   F GGPVG+ TI+    E  + IE++ EP++I QGFI+RTP
Sbjct: 260 VDQKGLDEMDNRILTTIIDKFRGGPVGLSTIATACGEEAETIEEVYEPFLIMQGFIKRTP 319

Query: 315 RGRLLMPIAWQHLGIDIPHR 334
           RGR     A+QHLG  +P++
Sbjct: 320 RGREATEEAYQHLGKTLPNK 339


>gi|227539702|ref|ZP_03969751.1| crossover junction endodeoxyribonuclease [Sphingobacterium
           spiritivorum ATCC 33300]
 gi|300773845|ref|ZP_07083714.1| crossover junction ATP-dependent DNA helicase RuvB
           [Sphingobacterium spiritivorum ATCC 33861]
 gi|227240344|gb|EEI90359.1| crossover junction endodeoxyribonuclease [Sphingobacterium
           spiritivorum ATCC 33300]
 gi|300760016|gb|EFK56843.1| crossover junction ATP-dependent DNA helicase RuvB
           [Sphingobacterium spiritivorum ATCC 33861]
          Length = 340

 Score =  356 bits (914), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 175/320 (54%), Positives = 229/320 (71%), Gaps = 1/320 (0%)

Query: 10  RNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
            +++  D D+   LRP+T E+FTGQ +   NL +F+ AAK R EALDHVL  GPPGLGKT
Sbjct: 10  EHLNPADRDLERVLRPQTFEDFTGQEKILENLSIFVRAAKLRGEALDHVLLHGPPGLGKT 69

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           TL+ ++A E+GV  + TSGPV+ K GDLA LLTNLE+ D+LFIDEIHRLS +VEE LY A
Sbjct: 70  TLSNIIANEMGVGIKITSGPVLDKPGDLAGLLTNLEEGDILFIDEIHRLSPLVEEYLYSA 129

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           MEDF++D+M+  GP+ARSV+I+L+ FTL+ ATTR GLLT PL+ RFGI  RL +Y+ + L
Sbjct: 130 MEDFKIDIMLETGPNARSVQISLNPFTLVGATTRSGLLTAPLRARFGINSRLQYYDAKLL 189

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
            TIV R A +    ++DE A EIA RSRGTPRIA  LLRR RDFA++    +I R IA  
Sbjct: 190 TTIVLRSATILNTPISDEGAYEIARRSRGTPRIANALLRRTRDFAQIKGNGSIDRAIAQY 249

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL  L +D+ G D++D R LT I   F GGPVG++TI+  + E    IE++ EP++IQ+G
Sbjct: 250 ALNALNVDENGLDEMDNRILTTIIDKFKGGPVGLKTIATAVGEDEGTIEEVYEPFLIQEG 309

Query: 309 FIQRTPRGRLLMPIAWQHLG 328
           ++ RT RGR     A++HLG
Sbjct: 310 YLMRTSRGRECTEAAFKHLG 329


>gi|282164972|ref|YP_003357357.1| Holliday junction ATP-dependent DNA helicase RuvB [Methanocella
           paludicola SANAE]
 gi|282157286|dbj|BAI62374.1| Holliday junction ATP-dependent DNA helicase RuvB [Methanocella
           paludicola SANAE]
          Length = 344

 Score =  356 bits (914), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 180/306 (58%), Positives = 238/306 (77%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP++L+EF GQ +   NLKVFIEAA+ R E LDHVL  GPPGLGKTTLA ++ARE+G N
Sbjct: 33  LRPKSLDEFIGQRKIKENLKVFIEAARKRNEPLDHVLLYGPPGLGKTTLAHIIAREMGAN 92

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGP I + GDLAA+LTN+++ DV+FIDEIHRLS +VEE++YPAMED+++D+++G+G
Sbjct: 93  IRITSGPAIERPGDLAAILTNIKEGDVIFIDEIHRLSHVVEEVMYPAMEDYEIDIIIGKG 152

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSARS+++ L +FTL+ ATTR GLLT+PL+DRFG+ +R +FYE  DLKTI+ R A + G+
Sbjct: 153 PSARSIRLELPKFTLVGATTRAGLLTSPLRDRFGMSMRFDFYEPRDLKTIIDRSASILGV 212

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            ++++ + EIA RSRGTPRIA RLLRRVRDFA V + K I REI + +L RL +D +G D
Sbjct: 213 ELSEDGSMEIAKRSRGTPRIANRLLRRVRDFASVGNKKVIDREIVNDSLNRLDVDYLGLD 272

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D R L  I ++F GGPVG ET++  +SE  + IED+ EPY+IQ GFI RTPRGR+   
Sbjct: 273 GMDRRILKKIVKDFDGGPVGAETLAVTVSEEVETIEDVYEPYLIQIGFINRTPRGRMSTK 332

Query: 322 IAWQHL 327
            A +HL
Sbjct: 333 AAVEHL 338


>gi|332886001|gb|EGK06245.1| Holliday junction ATP-dependent DNA helicase ruvB [Dysgonomonas
           mossii DSM 22836]
          Length = 340

 Score =  356 bits (914), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 173/329 (52%), Positives = 235/329 (71%), Gaps = 1/329 (0%)

Query: 1   MMDREGLLSRNVSQEDAD-ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M     +   N+++ + +  + LRP T + F GQ +   NL+VF+ AAK R E+LDH L 
Sbjct: 1   MEGTFNIHRENINENEKEFENALRPLTFQSFRGQSKVVENLQVFVTAAKMRGESLDHTLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTL+ ++A ELGV F+ TSGPV+ K GDLA LLT+LE  DVLFIDEIHRLS 
Sbjct: 61  HGPPGLGKTTLSNIIANELGVGFKITSGPVLDKPGDLAGLLTSLEPNDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE LY AMED+++D+M+ +GPSARSV+I L+ FTL+ ATTR GLLT+PL+ RFGI + 
Sbjct: 121 VVEEYLYSAMEDYRIDIMIDKGPSARSVQIELNPFTLVGATTRSGLLTSPLRARFGINMH 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y+I+ L  I+ R A +  +  + ++A EIA RSRGTPRIA  LLRRVRDFA+V  + 
Sbjct: 181 LEYYDIDTLVHIILRSADILNVPASKDSAIEIASRSRGTPRIANALLRRVRDFAQVKGSG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I ++IA  AL  L IDK G D++D + L ++   F GGPVGI TI+  L E    IE++
Sbjct: 241 KIDKDIASYALEALNIDKYGLDEIDNKILLILIDKFKGGPVGISTIATALGEDGGTIEEV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
            EP++I++GF++RTPRGR +  +A++HLG
Sbjct: 301 YEPFLIKEGFMKRTPRGREVTDLAYKHLG 329


>gi|332876892|ref|ZP_08444646.1| Holliday junction DNA helicase RuvB [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332685175|gb|EGJ58018.1| Holliday junction DNA helicase RuvB [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 340

 Score =  356 bits (914), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 175/316 (55%), Positives = 226/316 (71%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           +QE      LRP + ++F GQ     NLKVF++AA  R EALDH LF GPPGLGKTTLA 
Sbjct: 14  AQELDIERALRPLSFDDFAGQEAVLENLKVFVKAANMRNEALDHTLFHGPPGLGKTTLAH 73

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++A ELGV  + TSGPV+ K GDLA LLTNL++RDVLFIDEIHRLS +VEE LY AMED+
Sbjct: 74  ILANELGVGIKITSGPVLDKPGDLAGLLTNLQERDVLFIDEIHRLSPVVEEYLYSAMEDY 133

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           ++D+M+  GP+AR+V+INL+ FTLI ATTR GLLT P++ RFGI  RL +Y  E L  I+
Sbjct: 134 KIDIMIESGPNARTVQINLNPFTLIGATTRSGLLTAPMRARFGIQSRLQYYSTELLADII 193

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           QR A +  + ++ EAA E+A RSRGTPRIA  LLRR+RDFA++     I  EI    L  
Sbjct: 194 QRSASILKMPISMEAAIELASRSRGTPRIANALLRRIRDFAQIKGNGKIDIEITRFGLKA 253

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D  G D++D R L+ +   F GGPVGI T++  +SE  + IE++ EP++IQQGFI R
Sbjct: 254 LNVDAHGLDEMDNRILSTLIDKFKGGPVGITTLATAVSESAETIEEVYEPFLIQQGFIVR 313

Query: 313 TPRGRLLMPIAWQHLG 328
           TPRGR +  +A++HLG
Sbjct: 314 TPRGREVTELAYKHLG 329


>gi|94987629|ref|YP_595562.1| Holliday junction DNA helicase RuvB [Lawsonia intracellularis
           PHE/MN1-00]
 gi|122988756|sp|Q1MP36|RUVB_LAWIP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|94731878|emb|CAJ55241.1| Holliday junction resolvasome, helicase subunit [Lawsonia
           intracellularis PHE/MN1-00]
          Length = 341

 Score =  356 bits (913), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 172/329 (52%), Positives = 235/329 (71%), Gaps = 3/329 (0%)

Query: 6   GLLSRNVSQE---DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
            ++  +   E         +RP  L++F GQ E   NLKVF+ AA+ R +A+DH LF G 
Sbjct: 13  EIMQSSYPDETLYREKDDSIRPSRLDDFIGQEELRENLKVFLNAARDRGQAMDHTLFYGN 72

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLAQ++A ELGVN   TSGPV+ ++GDLAA+LTNL   D+LF+DEIHR+ I VE
Sbjct: 73  PGLGKTTLAQIIAAELGVNLICTSGPVLERSGDLAAILTNLSKHDILFVDEIHRMPITVE 132

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILYPA+ED++LDL++G+GP+AR+VKI L  FTL+ ATTR+GL+++PL+DRFGI  RL F
Sbjct: 133 EILYPALEDYKLDLVIGQGPAARTVKIELEPFTLVGATTRIGLISSPLRDRFGIISRLEF 192

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  E+L  I+ R +++  + +T + A EI  RSRGTPRIA RLLRRVRDFA V  + T+ 
Sbjct: 193 YTPEELSQIILRTSRILNVPITKKGAIEIGRRSRGTPRIANRLLRRVRDFAAVFGSATVD 252

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            E+ + AL +L +D+ G DQ+D + LT++   F GGPVGI+T++   SE    IED+ EP
Sbjct: 253 EELVNHALQKLDVDEKGLDQMDRKLLTVLIELFAGGPVGIKTLAVACSEEVRTIEDIYEP 312

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           Y+IQ GF++RTPRGR+    A++HL +  
Sbjct: 313 YLIQCGFMKRTPRGRMATVKAYKHLNLTD 341


>gi|323465933|gb|ADX69620.1| Holliday junction ATP-dependent DNA helicase ruvB [Lactobacillus
           helveticus H10]
          Length = 341

 Score =  356 bits (913), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 166/322 (51%), Positives = 223/322 (69%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
             S+E+A    LRP+TL+++ GQ      + ++I+AAK R EALDHVL  GPPGLGKTTL
Sbjct: 17  ENSEEEAMELSLRPQTLDQYLGQKRVKKEMSIYIKAAKQRDEALDHVLLYGPPGLGKTTL 76

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           A V+A ELGV+ +STSGP I KAGDL ALL++L+  DVLFIDEIHRL+  VEE+LY AME
Sbjct: 77  AFVIANELGVHLKSTSGPAIEKAGDLVALLSDLDPGDVLFIDEIHRLAKPVEEVLYSAME 136

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           D+ +D+++GEG +  +V + L  FTLI ATT    L+ PL+DRFGI   + +Y I++L+ 
Sbjct: 137 DYYIDIVIGEGQTTHAVHVPLPPFTLIGATTLAAQLSAPLRDRFGIVEHMQYYTIDELEK 196

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           IVQR + +   ++  EAA E+A RSRGTPR+A R L+RVRDFAEV   KTI+    + AL
Sbjct: 197 IVQRSSDVFHTSIAPEAAHELARRSRGTPRVANRFLKRVRDFAEVKGEKTISLATTEGAL 256

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
            +L +D  G DQ D R L  +   + GGPVGI T++A + E  + IE L EPY++Q GFI
Sbjct: 257 KQLQVDDEGLDQTDRRLLRTMIEGYNGGPVGIRTLAANVGEDMETIESLYEPYLLQHGFI 316

Query: 311 QRTPRGRLLMPIAWQHLGIDIP 332
             TPRGR++   A+  LG+ +P
Sbjct: 317 LLTPRGRMVTDKAYLQLGLPVP 338


>gi|295107076|emb|CBL04619.1| Holliday junction DNA helicase subunit RuvB [Gordonibacter
           pamelaeae 7-10-1-b]
          Length = 355

 Score =  356 bits (913), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 173/328 (52%), Positives = 242/328 (73%), Gaps = 1/328 (0%)

Query: 6   GLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
             ++  ++++D      LRP+ L ++ GQ +   +L + IEAA+AR + +DH+LF GPPG
Sbjct: 26  RAVTAELTEDDLVLDRSLRPKRLGDYLGQTKVKESLAILIEAARARGDVVDHILFSGPPG 85

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLA VVA ELG + R+TSGP I + GDLAA+LTNLE+ DVLFIDEIHRL+ +VEE+
Sbjct: 86  LGKTTLATVVANELGASIRTTSGPAIERTGDLAAILTNLEEGDVLFIDEIHRLNRMVEEV 145

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPA+EDF LD++VG+GP+ARS++++L  FTLI ATTR GLLT PL+DRFG+  RL +Y 
Sbjct: 146 LYPALEDFALDIVVGKGPAARSIRLDLPHFTLIGATTRTGLLTGPLRDRFGMVFRLAYYT 205

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            E+L +IV R A + G+ + ++ A EIA RSRGTPR+A RLL+RVRD+A+V    TI  +
Sbjct: 206 PEELGSIVCRSAAILGVDIAEDGALEIARRSRGTPRLANRLLKRVRDWAQVRGDGTIDED 265

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +A  AL    +D +G D +D R L ++A  FGG PVG+ T+++ LSE  D++ED+ EP++
Sbjct: 266 VAAQALSFFEVDALGLDAVDNRILELLAVQFGGRPVGLSTLASALSEDPDSLEDVYEPFL 325

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           +QQG + RTP+GR   P A++HLGI +P
Sbjct: 326 MQQGLMVRTPKGRQATPRAYEHLGIALP 353


>gi|256831253|ref|YP_003159981.1| Holliday junction DNA helicase RuvB [Desulfomicrobium baculatum DSM
           4028]
 gi|256580429|gb|ACU91565.1| Holliday junction DNA helicase RuvB [Desulfomicrobium baculatum DSM
           4028]
          Length = 324

 Score =  356 bits (913), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 175/314 (55%), Positives = 232/314 (73%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           ++     +RPRTL++F GQ +   NLK++++AAK R + LDH L  G PGLGKTTLAQ++
Sbjct: 3   QNPIEEHIRPRTLDDFIGQEDVRGNLKIYLQAAKERGQQLDHCLLYGNPGLGKTTLAQIM 62

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A ELGVN  STSGPV+ ++GDLAA+LT+L   D+LFIDEIHR+  +VEEILYP MEDF+L
Sbjct: 63  ASELGVNLVSTSGPVLERSGDLAAILTSLNRHDLLFIDEIHRMPPVVEEILYPGMEDFKL 122

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           DL+VG+GP AR+VKI L  FTL+ ATTR+GLLT+PL+DRFG+  RL FY  ++L  IV R
Sbjct: 123 DLIVGQGPGARTVKIELEPFTLVGATTRIGLLTSPLRDRFGVICRLEFYNPQELSLIVTR 182

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A++ GL ++ + A EI  RSRGTPRIA RLLRRV D+A+VA +  I  E+A   L  + 
Sbjct: 183 AARILGLQISADGALEIGKRSRGTPRIANRLLRRVADYAQVAGSAVIDAEVAAKGLDIMD 242

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D  G D +D + L  I  +FGGGPVG++TI+A  SE    IED+ EPY+IQ GF++RTP
Sbjct: 243 VDSRGLDMMDRKILECIIDHFGGGPVGVKTIAAACSEEVRTIEDIYEPYLIQCGFLKRTP 302

Query: 315 RGRLLMPIAWQHLG 328
           RGR++ P A+QH+ 
Sbjct: 303 RGRVVTPKAYQHID 316


>gi|257066398|ref|YP_003152654.1| Holliday junction DNA helicase RuvB [Anaerococcus prevotii DSM
           20548]
 gi|256798278|gb|ACV28933.1| Holliday junction DNA helicase RuvB [Anaerococcus prevotii DSM
           20548]
          Length = 335

 Score =  356 bits (913), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 172/330 (52%), Positives = 234/330 (70%), Gaps = 1/330 (0%)

Query: 3   DREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           + E ++  N   ED      +RPR L+++ GQ +    L +FI+++ +R E LDHVL  G
Sbjct: 4   ENERIVGSNEQIEDLQEESCIRPRWLKDYIGQDKVKEKLDIFIQSSLSRNEPLDHVLLQG 63

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTL+ ++A ELGVN R TSGP I +  DLA++LTNL + DVLFIDEIHR++  V
Sbjct: 64  PPGLGKTTLSTIIANELGVNLRVTSGPAIERPSDLASILTNLAEGDVLFIDEIHRINRSV 123

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILY AMEDF LD++VG+GP+A+S++I+L++FTLI ATTR G+L+ PL+DRFG+ + LN
Sbjct: 124 EEILYSAMEDFVLDIIVGKGPNAQSIRIDLAKFTLIGATTRAGMLSAPLRDRFGVLLALN 183

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
            Y+ +DL TIV+R A++  + + D+ A EIA RSRGTPRIA RLL+RVRDFA V   + I
Sbjct: 184 LYDTKDLTTIVKRSAQILDIPIDDKGALEIARRSRGTPRIANRLLKRVRDFAIVKADEKI 243

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
             E +   L  L ID MG D +D + +  +  NFGGGPVG++TI+A        IED+ E
Sbjct: 244 DFETSKRGLELLEIDPMGLDTMDKKIIMTMYDNFGGGPVGVDTIAASTGIENVTIEDVYE 303

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           PY++Q GFI RTPRGR+L   A++H G+ I
Sbjct: 304 PYLLQIGFISRTPRGRVLTRKAYEHYGLKI 333


>gi|329769668|ref|ZP_08261072.1| Holliday junction ATP-dependent DNA helicase ruvB [Gemella
           sanguinis M325]
 gi|328838423|gb|EGF88032.1| Holliday junction ATP-dependent DNA helicase ruvB [Gemella
           sanguinis M325]
          Length = 333

 Score =  356 bits (913), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 174/331 (52%), Positives = 234/331 (70%), Gaps = 2/331 (0%)

Query: 2   MDREGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD E ++S N +  E+ +   LRP+ L ++ GQ +  +NLKVFIEAAK R+E LDH L  
Sbjct: 1   MD-ERMVSANQNDGEEREEQSLRPKLLSQYIGQEQIKNNLKVFIEAAKIRSEVLDHCLLY 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A E+ V  + TSGP I K+GDLAA+LT+LE  DVLFIDEIHR+S  
Sbjct: 60  GPPGLGKTTLATIIANEMEVGIKYTSGPAIEKSGDLAAILTSLEPGDVLFIDEIHRISRS 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EEILY AMEDF LD+++G+G  +RS++I L  FTL+ ATTR G LT PL+DRFG+  RL
Sbjct: 120 IEEILYSAMEDFYLDIVIGKGDESRSIRIELPPFTLVGATTRAGALTAPLRDRFGVHCRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY I +L+ I+ R A + G  +  E++ EIAMRSRGTPRIA RLL+RVRDFA+V +   
Sbjct: 180 EFYNIGELQNIINRTADIFGCEIDTESSYEIAMRSRGTPRIANRLLKRVRDFAQVKNNGI 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           IT+ +A  +L  L +D  G D +D + L  + + + G  VG+ETI+  + E    IED+ 
Sbjct: 240 ITQSLAKDSLDLLQVDSKGLDNIDYKILECLIKRYDGRAVGLETIAITIGEESITIEDVY 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           EPY++++GFI+RTPRGR   P A+QHLG+  
Sbjct: 300 EPYLVKEGFIERTPRGRRATPKAYQHLGLKY 330


>gi|161506975|ref|YP_001576929.1| Holliday junction DNA helicase RuvB [Lactobacillus helveticus DPC
           4571]
 gi|172048185|sp|A8YTI2|RUVB_LACH4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|160347964|gb|ABX26638.1| Holliday junction DNA helicase [Lactobacillus helveticus DPC 4571]
          Length = 347

 Score =  356 bits (913), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 166/322 (51%), Positives = 223/322 (69%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
             S+E+A    LRP+TL+++ GQ      + ++I+AAK R EALDHVL  GPPGLGKTTL
Sbjct: 23  ENSEEEAMELSLRPQTLDQYLGQKRVKKEMSIYIKAAKQRDEALDHVLLYGPPGLGKTTL 82

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           A V+A ELGV+ +STSGP I KAGDL ALL++L+  DVLFIDEIHRL+  VEE+LY AME
Sbjct: 83  AFVIANELGVHLKSTSGPAIEKAGDLVALLSDLDPGDVLFIDEIHRLAKPVEEVLYSAME 142

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           D+ +D+++GEG +  +V + L  FTLI ATT  G L+ PL+DRFGI   + +Y I++L+ 
Sbjct: 143 DYYIDIVIGEGQTTHAVHVPLPPFTLIGATTLAGQLSAPLRDRFGIVEHMQYYTIDELEK 202

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           IVQR + +   ++  EAA E+A RSRGTPR+A R L+RVRDFAEV   KTI+    + AL
Sbjct: 203 IVQRSSDVFHTSIAPEAAHELARRSRGTPRVANRFLKRVRDFAEVKGEKTISLATTEGAL 262

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
            +L +D  G DQ D R L  +   + GGPVGI T++A + E  + IE L EPY++Q GFI
Sbjct: 263 KQLQVDDEGLDQTDRRLLRTMIEGYNGGPVGIRTLAANVGEDMETIESLYEPYLLQHGFI 322

Query: 311 QRTPRGRLLMPIAWQHLGIDIP 332
              PRGR++   A+  LG+ +P
Sbjct: 323 LLGPRGRMVTDKAYLQLGLPVP 344


>gi|329767085|ref|ZP_08258613.1| Holliday junction ATP-dependent DNA helicase ruvB [Gemella
           haemolysans M341]
 gi|328837810|gb|EGF87435.1| Holliday junction ATP-dependent DNA helicase ruvB [Gemella
           haemolysans M341]
          Length = 333

 Score =  356 bits (913), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 167/330 (50%), Positives = 229/330 (69%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M+   + +     E+ +   LRP+ L ++ GQ +   NLK+FIEAAK R E LDH L  G
Sbjct: 1   MEDRMVSTSQNFGEEREEQSLRPKFLSQYIGQEQIKRNLKIFIEAAKLRGEVLDHCLLYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+ V  + TSGP I K+GDLAA+LT+LE  DVLFIDEIHR+S  +
Sbjct: 61  PPGLGKTTLATIIANEMEVGIKYTSGPAIEKSGDLAAILTSLEPGDVLFIDEIHRISRSI 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILY AMEDF LD+++G+G  +RS++I L  FTL+ ATTR G LT PL+DRFG+  RL 
Sbjct: 121 EEILYSAMEDFYLDIVIGKGEESRSIRIELPPFTLVGATTRAGALTAPLRDRFGVHCRLE 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY I +L+ I++R + +    + +E++ EIAMRSRGTPRIA RLL+RVRDFA+V +   I
Sbjct: 181 FYTISELQNIIERTSDIFECDIDEESSYEIAMRSRGTPRIANRLLKRVRDFAQVKNDGVI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
            +++A  +L  L +D  G D +D + L  + + + G  VG+ETI+  + E    IED+ E
Sbjct: 241 AKDLAVESLDLLQVDAKGLDNIDYKILECLIKRYDGRAVGLETIAVTIGEESITIEDVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           PY++++GFI+RTPRGR   P A+QHLGI  
Sbjct: 301 PYLVKEGFIERTPRGRRATPKAYQHLGITY 330


>gi|108758416|ref|YP_633125.1| Holliday junction DNA helicase RuvB [Myxococcus xanthus DK 1622]
 gi|123074142|sp|Q1D2J8|RUVB_MYXXD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|108462296|gb|ABF87481.1| Holliday junction DNA helicase RuvB [Myxococcus xanthus DK 1622]
          Length = 343

 Score =  356 bits (913), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 179/333 (53%), Positives = 236/333 (70%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNVSQEDA-DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M  +   LS +V  ED    + LRPR+ +E+ GQ      LKV+++AA++R EALDH LF
Sbjct: 3   MARKSDTLSEDVLPEDVRLEASLRPRSFDEYVGQGPVVEKLKVYVQAARSRGEALDHCLF 62

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKT+LA ++A ELGV    TSGP + + GDLA LLTNL+ RDVLFIDEIHRL+ 
Sbjct: 63  SGPPGLGKTSLAHIIANELGVGIHVTSGPALERKGDLAGLLTNLDARDVLFIDEIHRLNA 122

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEE LYPAMEDF+LD+ +  GP+AR++KI+L  FTLI ATTR GLLT+PL+DRF I  R
Sbjct: 123 AVEEYLYPAMEDFRLDITIDTGPAARAMKIDLPPFTLIGATTRTGLLTSPLRDRFQIQER 182

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y+ + L++I+ R A++ G+ +  +AA E+A RSRGTPRI  RLLRR+RDFAEV    
Sbjct: 183 LEYYDAKALESILHRSARILGIPLDKDAAREVASRSRGTPRITNRLLRRLRDFAEVEGNG 242

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT E+A  +L RL +D  G D +D + L  I   FGGGPVG+ETI+A + E RD IED+
Sbjct: 243 RITLELAQKSLDRLGVDASGLDSMDRKILLTILDKFGGGPVGVETIAASVGEQRDTIEDV 302

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
            EP+++Q+GF+QRTPRGR+     +Q+     P
Sbjct: 303 YEPFLMQEGFLQRTPRGRMATHRTYQYFKKQPP 335


>gi|188995346|ref|YP_001929598.1| Holliday junction DNA helicase RuvB [Porphyromonas gingivalis ATCC
           33277]
 gi|188595026|dbj|BAG34001.1| holliday junction DNA helicase RuvB [Porphyromonas gingivalis ATCC
           33277]
          Length = 364

 Score =  356 bits (913), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 173/321 (53%), Positives = 229/321 (71%), Gaps = 1/321 (0%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E    + LRP T + F+GQ +   NL +F+ AA+ R EALDH L  GPPGLGKTTL+ ++
Sbjct: 39  EREVENKLRPLTFDSFSGQDKVVENLSIFVAAARLRGEALDHTLLHGPPGLGKTTLSNII 98

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A ELGV  + TSGPV+ K GDLA LLT+LE  DVLFIDEIHRLS +VEE LY AMED+++
Sbjct: 99  ANELGVGLKITSGPVLDKPGDLAGLLTSLESNDVLFIDEIHRLSPLVEEYLYSAMEDYRI 158

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D+M+ +GPSARS++INLS FTL+ ATTR GLLT PL+ RFGI + L +Y++  +  IV+R
Sbjct: 159 DIMLDKGPSARSIQINLSPFTLVGATTRSGLLTAPLRARFGINLHLEYYDVHTITGIVER 218

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A++  ++ + +AA EIA RSRGTPRIA  LLRRVRDFA+V  +  I + IA  AL  L 
Sbjct: 219 SARILEVSCSHDAAIEIAGRSRGTPRIANALLRRVRDFAQVKGSGAIDKPIACYALEALN 278

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           ID+ G D +D + L  I   F GGPVG+ TI+  L E    IE++ EP++I++GF++RTP
Sbjct: 279 IDRYGLDNVDHKLLATIIDKFAGGPVGLSTIATALGEDPGTIEEVYEPFLIKEGFLKRTP 338

Query: 315 RGRLLMPIAWQHLGIDI-PHR 334
           RGR +  +A+ HLG +  PHR
Sbjct: 339 RGREVTELAYTHLGRNPRPHR 359


>gi|197106548|ref|YP_002131925.1| Holliday junction DNA helicase RuvB [Phenylobacterium zucineum
           HLK1]
 gi|238690136|sp|B4R9Z2|RUVB_PHEZH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|196479968|gb|ACG79496.1| Holliday junction DNA helicase RuvB [Phenylobacterium zucineum
           HLK1]
          Length = 344

 Score =  355 bits (912), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 200/328 (60%), Positives = 250/328 (76%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            ++S      +     LRP+TL EF GQ +A +NL VFI+AA+ R EALDHVL  GPPGL
Sbjct: 3   RIVSGEAQPFEPADRALRPQTLSEFVGQEQAKANLSVFIDAARGRGEALDHVLLFGPPGL 62

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLAQ++ARELGVNFR+TSGPV+AKAGDLAA+LTNLE RDVLFIDEIHRL+  VEEIL
Sbjct: 63  GKTTLAQILARELGVNFRATSGPVLAKAGDLAAILTNLEPRDVLFIDEIHRLAANVEEIL 122

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           YPAMED  LDL++GEGPSARSV+I+L+ FTL+AATTR GLL  PL+DRFGIP+RL FY  
Sbjct: 123 YPAMEDHVLDLVIGEGPSARSVRIDLAPFTLVAATTRAGLLATPLRDRFGIPVRLEFYTH 182

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           ++L  ++   A   G  +    A EIA R+RGTPR+AGRLLRRVRDFA    A+ I R+ 
Sbjct: 183 DELARVLLGAAAKMGAPLDPSGAREIAARARGTPRVAGRLLRRVRDFAAADGAEVIDRKA 242

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           A AAL RL +D++G D LD RYL  +  N+ GGP G+ET++  ++E RDA+ED+IEP+++
Sbjct: 243 AAAALARLDVDEVGLDALDRRYLRALIENYAGGPAGVETLAYAIAEARDAVEDVIEPFLL 302

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           QQGFIQRTPRGR+    A++HLG+  P 
Sbjct: 303 QQGFIQRTPRGRMACAKAYEHLGLQAPR 330


>gi|326336334|ref|ZP_08202505.1| crossover junction ATP-dependent DNA helicase RuvB [Capnocytophaga
           sp. oral taxon 338 str. F0234]
 gi|325691508|gb|EGD33476.1| crossover junction ATP-dependent DNA helicase RuvB [Capnocytophaga
           sp. oral taxon 338 str. F0234]
          Length = 341

 Score =  355 bits (912), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 181/319 (56%), Positives = 230/319 (72%), Gaps = 1/319 (0%)

Query: 11  NVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           N+S ++ DI   LRP +  +FTGQ     NLK+F++AA  R EALDH LF GPPGLGKTT
Sbjct: 11  NLSPQELDIERALRPLSFNDFTGQEAILENLKIFVKAANLRGEALDHTLFHGPPGLGKTT 70

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           LA ++A ELGV  + TSGPV+ K GDLA LLTNLE RDVLFIDEIHRLS IVEE LY AM
Sbjct: 71  LANILANELGVGIKITSGPVLDKPGDLAGLLTNLEPRDVLFIDEIHRLSPIVEEYLYSAM 130

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           ED+++D+M+  GP+AR+V+INL+ FTLI ATTR GLLT P++ RFGI  RL +Y  E L 
Sbjct: 131 EDYKIDIMIESGPNARTVQINLNPFTLIGATTRSGLLTAPMRARFGIQSRLQYYTTELLA 190

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            I+QR A + G+ ++ EAA E+A RSRGTPRIA  LLRRVRDFA++     I  EI   A
Sbjct: 191 DIIQRSAHILGVPISMEAAIELAGRSRGTPRIANALLRRVRDFAQIKGNGKIDIEITRFA 250

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           L  L +D  G D++D + L  I   F GGPVGI T++  +SE  + +E++ EP++IQQGF
Sbjct: 251 LKALNVDAHGLDEMDNKILLTIIDKFKGGPVGITTLATAVSENAETLEEVYEPFLIQQGF 310

Query: 310 IQRTPRGRLLMPIAWQHLG 328
           I RTPRGR +  +A++HLG
Sbjct: 311 IIRTPRGREVTDLAYKHLG 329


>gi|225011146|ref|ZP_03701608.1| Holliday junction DNA helicase RuvB [Flavobacteria bacterium
           MS024-3C]
 gi|225004708|gb|EEG42668.1| Holliday junction DNA helicase RuvB [Flavobacteria bacterium
           MS024-3C]
          Length = 340

 Score =  355 bits (912), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 185/336 (55%), Positives = 234/336 (69%), Gaps = 2/336 (0%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M +     S +++ E  DI   LRP +  +FTGQ +   NL +F++AA  R EALDH LF
Sbjct: 1   MNEHLDPTSDHLTPESLDIEKALRPLSFNDFTGQEQVLENLSIFVKAANLREEALDHTLF 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A ELGV  + TSGPV+ K GDLA LLTNLE+RDVLFIDEIHRLS 
Sbjct: 61  HGPPGLGKTTLAHILANELGVGIKITSGPVLDKPGDLAGLLTNLEERDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           IVEE LY AMED+++D+M+  GP+ARSV+I+L+ FTLI ATTR GLLT P++ RFGI  R
Sbjct: 121 IVEEYLYSAMEDYKIDIMIESGPNARSVQIHLNPFTLIGATTRSGLLTAPMRARFGIQSR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y  E L TIV R A++  + +TDEAA EIA RSRGTPRI   LLRRVRDFA++    
Sbjct: 181 LQYYSTELLSTIVTRSAEILKVPITDEAAIEIAGRSRGTPRICNALLRRVRDFAQIKGNG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  EIA   L  L +D  G D++D + LT +   F GGPVGI T++  +SE  + IE++
Sbjct: 241 KIDLEIAQFGLGALHVDAHGLDEMDNKILTTLIDKFKGGPVGITTLATAVSESAETIEEV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID-IPHR 334
            EP++IQQGFI RTPRGR +   A+ HLG    P +
Sbjct: 301 YEPFLIQQGFIMRTPRGREVTAAAYTHLGRTKSPEQ 336


>gi|114800414|ref|YP_758881.1| Holliday junction DNA helicase RuvB [Hyphomonas neptunium ATCC
           15444]
 gi|123028468|sp|Q0C5W2|RUVB_HYPNA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|114740588|gb|ABI78713.1| Holliday junction DNA helicase RuvB [Hyphomonas neptunium ATCC
           15444]
          Length = 344

 Score =  355 bits (912), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 205/333 (61%), Positives = 257/333 (77%), Gaps = 2/333 (0%)

Query: 2   MDREGLLS-RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M REG LS  N    DA    LRP+T E++ GQ +A +NLKV++EAA+ R EALDHVL  
Sbjct: 1   MSREGALSDPNAQGGDALDRALRPQTFEDYVGQRKAKANLKVYVEAARGRKEALDHVLLF 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++ARE+GV FR+TSGPVIAKAGDLAA+LTNLE  DVLFIDEIHRL  I
Sbjct: 61  GPPGLGKTTLAQILAREMGVGFRATSGPVIAKAGDLAAILTNLEPNDVLFIDEIHRLPAI 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILYPAMED+ LDL++GEGP+ARSV+++L+ FTL+ ATTR GLL  PL+DRFGIP+RL
Sbjct: 121 VEEILYPAMEDYALDLVIGEGPAARSVRLDLAPFTLVGATTRAGLLATPLRDRFGIPVRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FYE E+L  IV   A+  G+ +T++ A EI+ R+RGTPRIA RLLRRVRDFAE   A  
Sbjct: 181 EFYEPEELGRIVMAAARKLGVPITEDGAVEISARARGTPRIALRLLRRVRDFAEAEGADI 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
             R  A  AL RL ID+ G D LD RYL  + + + GGPVG +T++A LSE RDA+ED+I
Sbjct: 241 -NRASAARALKRLEIDEDGLDALDRRYLHALVKTYAGGPVGADTLAAALSEARDAVEDVI 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY++Q+G++ RTPRGR+  P+A++ LG+  P+
Sbjct: 300 EPYLMQKGYVARTPRGRVAAPLAYERLGLKAPN 332


>gi|313887103|ref|ZP_07820799.1| Holliday junction DNA helicase RuvB [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|332300438|ref|YP_004442359.1| Holliday junction ATP-dependent DNA helicase ruvB [Porphyromonas
           asaccharolytica DSM 20707]
 gi|312923332|gb|EFR34145.1| Holliday junction DNA helicase RuvB [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|332177501|gb|AEE13191.1| Holliday junction ATP-dependent DNA helicase ruvB [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 348

 Score =  355 bits (912), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 175/328 (53%), Positives = 220/328 (67%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           RE         +      LRP   + F GQ     NLKVF+EAA+ R EALDHVL  GPP
Sbjct: 9   REERTPPQSLSDLQQEEQLRPSYFDSFRGQGHVVDNLKVFVEAARRRDEALDHVLLYGPP 68

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTL+ +++ ELGV  + TSGPV+ KAGDLA LLT+LE RDVLFIDEIHRLS  VEE
Sbjct: 69  GLGKTTLSHIISHELGVGMKITSGPVLEKAGDLAGLLTSLEPRDVLFIDEIHRLSHTVEE 128

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
            LY AMEDF++DLM+ +GP ARS++I+L+ FTL+ ATTR GLLT PL+DRFGI + L +Y
Sbjct: 129 YLYSAMEDFRIDLMIDKGPGARSIQIDLNPFTLVGATTRSGLLTAPLRDRFGINLHLEYY 188

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           +++ L  IV R A++  +   +EAA  IA+RSRGTPRIA  LL+RVRDFA+V     I  
Sbjct: 189 DVDTLTDIVLRSARILEVPCEEEAARGIALRSRGTPRIANALLKRVRDFAQVKGNGVIDS 248

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           +I   AL  L IDK G D  D + L  I   F GGPVG+ TI+  + E    IE++ EP+
Sbjct: 249 DITTVALEALHIDKHGLDHTDHKLLKTIIDKFDGGPVGLTTIATAMGEDPGTIEEVYEPF 308

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           +IQ+GFIQRT  GR    +A+ HLG   
Sbjct: 309 LIQEGFIQRTRTGRQATRLAYAHLGRTY 336


>gi|315658089|ref|ZP_07910961.1| crossover junction ATP-dependent DNA helicase RuvB [Staphylococcus
           lugdunensis M23590]
 gi|315496418|gb|EFU84741.1| crossover junction ATP-dependent DNA helicase RuvB [Staphylococcus
           lugdunensis M23590]
          Length = 334

 Score =  355 bits (912), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 169/327 (51%), Positives = 230/327 (70%), Gaps = 2/327 (0%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD + ++ ++  QED+     LRP  L+++ GQ    SNL+VFI+AAK R E LDHVL  
Sbjct: 1   MD-DRMVDQSFHQEDSAFEYSLRPTYLKQYIGQTSIKSNLEVFIQAAKLREEPLDHVLLF 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTL+ ++A E+ VN R+ SGP + + GDLAA+L+ L+  DVLFIDEIHRLS +
Sbjct: 60  GPPGLGKTTLSNIIANEMEVNIRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSV 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDF LD+++G+G  ARS++I+L  FTLI ATTR G LT PL+DRFG+ +RL
Sbjct: 120 VEEVLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLIGATTRAGSLTGPLRDRFGVHLRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y   +LK I+ R A + G ++ DE+A E+A RSRGTPR+A RLL+RVRDF +V     
Sbjct: 180 EYYNEHELKEIIIRTADVLGTSIDDESAVELAKRSRGTPRVANRLLKRVRDFQQVNGDDQ 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I  E    AL  L +D+ G D +D + +  I   + GGPVG++TI+  + E R  IED+ 
Sbjct: 240 IYIETTKKALKLLQVDEQGLDYIDHKMMNCIINQYQGGPVGLDTIAVSIGEERVTIEDVY 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHL 327
           EP++IQ+GFI+RTPRGR     A++H 
Sbjct: 300 EPFLIQKGFIERTPRGRKATAFAYEHF 326


>gi|227872462|ref|ZP_03990803.1| crossover junction endoribonuclease subunit B [Oribacterium sinus
           F0268]
 gi|227841693|gb|EEJ51982.1| crossover junction endoribonuclease subunit B [Oribacterium sinus
           F0268]
          Length = 331

 Score =  355 bits (912), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 162/329 (49%), Positives = 233/329 (70%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M+R+ + +    ++ +    +RP+ L+++ GQ +    L +FIEAAK R ++LDH LF G
Sbjct: 1   MERKLIQTEESKEDLSFDPKIRPQFLKDYIGQEKLKETLSIFIEAAKKRKQSLDHCLFYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTT++ ++A ELGV+ + TSGP I K G++AA+L NL + DVLF+DEIHRL+  V
Sbjct: 61  PPGLGKTTISNIIANELGVHCKITSGPAIEKPGEIAAILNNLSEGDVLFVDEIHRLNRQV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMEDF +D+++G+  S RS++++L RFTL+ ATTR GLL+ PL+DRFGI  +L 
Sbjct: 121 EEVLYPAMEDFAIDVLLGKESSTRSIRLDLPRFTLVGATTRAGLLSAPLRDRFGIIGKLE 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY+ E+L+ IV R AK+  +++ +  A  IA+RSR    +A RLL+RVRDFAE+ +   I
Sbjct: 181 FYKEEELEEIVLRSAKVLSISIDEGGAKSIALRSRVHQVLANRLLKRVRDFAEIKYNGVI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
            +E+A+ AL  L +D +G D  D +YL  +   F GGPVG+ET++  L E R  +ED+IE
Sbjct: 241 RKEVAEDALDLLDVDTLGLDTYDRQYLWNLIEKFSGGPVGVETLATSLGEDRGTLEDMIE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           PY+I QG I RTPRGR+    A+QHLG+ 
Sbjct: 301 PYLILQGLIDRTPRGRIATKHAYQHLGLS 329


>gi|304436497|ref|ZP_07396471.1| crossover junction ATP-dependent DNA helicase RuvB [Selenomonas sp.
           oral taxon 149 str. 67H29BP]
 gi|304370543|gb|EFM24194.1| crossover junction ATP-dependent DNA helicase RuvB [Selenomonas sp.
           oral taxon 149 str. 67H29BP]
          Length = 345

 Score =  355 bits (912), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 170/333 (51%), Positives = 231/333 (69%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M + E ++S      D     LRPR L E+ GQ    SNL  FI+AA +R EALDHVL  
Sbjct: 4   MGEDEEIISYEEQSTDGWQYSLRPRRLSEYIGQDRVKSNLSKFIQAALSRGEALDHVLLC 63

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A E+G NFR TS P I + GDLA+LLTNL++ DVLFIDEIHRLS  
Sbjct: 64  GPPGLGKTTLAAIIANEMGANFRQTSAPAIERQGDLASLLTNLQEHDVLFIDEIHRLSHH 123

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILY AMED  +D+++G+GPSARS++++L+ FTL+ ATT+ G L+ PL+DRFGI  RL
Sbjct: 124 VEEILYSAMEDHAIDIIIGKGPSARSIRLDLAPFTLVGATTKTGSLSAPLRDRFGIQARL 183

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y  + L  I++R A++  + +  + A EIA RSRGTPR+A R+L+RVRD A+VA  + 
Sbjct: 184 EYYTTDALLLIIERTAEILSVHIERDGALEIARRSRGTPRVANRILKRVRDIAQVAGEEI 243

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I+R +   AL  L +D+ G +  D   L ++ + F GGPVG++T++A LSE  + IED+ 
Sbjct: 244 ISRSVTIDALDALEVDECGLENKDRYMLEVMIQKFSGGPVGLKTLAAALSEMTETIEDVY 303

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY+IQ GFI RT RGR++    ++H+G   P 
Sbjct: 304 EPYLIQLGFIARTARGRVVTQGGYEHIGAPYPR 336


>gi|319892694|ref|YP_004149569.1| Holliday junction DNA helicase RuvB [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317162390|gb|ADV05933.1| Holliday junction DNA helicase RuvB [Staphylococcus
           pseudintermedius HKU10-03]
 gi|323464268|gb|ADX76421.1| Holliday junction DNA helicase RuvB [Staphylococcus
           pseudintermedius ED99]
          Length = 332

 Score =  355 bits (912), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 172/332 (51%), Positives = 230/332 (69%), Gaps = 1/332 (0%)

Query: 2   MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MDR+ ++  +   ++    L LRP  L ++ GQ    SNL VFI+AAK R E LDHVL  
Sbjct: 1   MDRDRMMDGHEQVDEHTFELSLRPERLRQYIGQSTIKSNLDVFIQAAKIREEPLDHVLLF 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTL+ ++A E+ VN R+ SGP I + GDLAA+LT L+  DVLFIDEIHRLS +
Sbjct: 61  GPPGLGKTTLSHIIANEMDVNLRTVSGPSIERPGDLAAILTALQPGDVLFIDEIHRLSSV 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDF LD++VG+G  ARS++I+L  FTL+ ATTR G LT+PL+DRFG+ +RL
Sbjct: 121 VEEVLYPAMEDFFLDIIVGKGDEARSIRIDLPPFTLVGATTRAGSLTSPLRDRFGVHLRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y  E+L  I+ R A++ G A+ +E+A EIA RSRGTPRIA RLL+R+RDF +V     
Sbjct: 181 EYYTEEELTQIIIRTAEVLGTAIDEESAFEIAKRSRGTPRIANRLLKRIRDFQQVKQDDM 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I  E    AL  L +D  G D +D + +  I   + GGPVG++TI+  + E R  IED+ 
Sbjct: 241 IYIETTKHALKLLQVDDEGLDYIDHKMMACIIEQYRGGPVGLDTIAVSIGEERVTIEDVY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EP++IQ+GF++RTPRGR   P A++H     P
Sbjct: 301 EPFLIQKGFLERTPRGRKATPYAYEHFKYTSP 332


>gi|110636796|ref|YP_677003.1| Holliday junction DNA helicase RuvB [Cytophaga hutchinsonii ATCC
           33406]
 gi|123354819|sp|Q11Y53|RUVB_CYTH3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|110279477|gb|ABG57663.1| Holliday junction DNA helicase [Cytophaga hutchinsonii ATCC 33406]
          Length = 342

 Score =  355 bits (912), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 174/336 (51%), Positives = 229/336 (68%), Gaps = 3/336 (0%)

Query: 2   MDREGLLSRN---VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M  + L S +    S E      LRP + ++F GQ +   NLK+F+ AAK R E LDHVL
Sbjct: 1   MREDYLKSDDEQFTSGEKEIERALRPLSFDDFAGQDKILENLKIFVGAAKQRGEPLDHVL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTL+ +++ EL  N + TSGPV+ K GDLA LLTNL+  DVLFIDEIHRL+
Sbjct: 61  LHGPPGLGKTTLSNIISNELNSNIKITSGPVLEKPGDLAGLLTNLQTNDVLFIDEIHRLN 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            +VEE LY AMED+++D+M+  G +ARS++I L+ FTLI ATTR GLLT+PL+ RFGI  
Sbjct: 121 SVVEEYLYSAMEDYKIDIMLDSGANARSIQIGLNPFTLIGATTRAGLLTSPLRARFGINA 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           RL +Y+ + L  IVQR + L    + + AA EIA RSRGTPRIA  LLRR RDFA++   
Sbjct: 181 RLEYYDAKLLTRIVQRSSDLLNTPILETAAFEIARRSRGTPRIANNLLRRTRDFAQIKGD 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
            TIT EIA  AL  L +D  G D +D R LT I   F GGPVG+ TI+  +SE  + IE+
Sbjct: 241 GTITLEIARIALQALNVDHNGLDDMDNRILTTIIDKFKGGPVGLSTIATAVSEEAETIEE 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           + EP++IQ+G+++RT RGR + P+A++HL    P +
Sbjct: 301 VYEPFLIQEGYLKRTSRGREVTPLAYKHLQRTPPAQ 336


>gi|228470154|ref|ZP_04055063.1| holliday junction DNA helicase RuvB [Porphyromonas uenonis 60-3]
 gi|228308292|gb|EEK17147.1| holliday junction DNA helicase RuvB [Porphyromonas uenonis 60-3]
          Length = 348

 Score =  355 bits (912), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 175/328 (53%), Positives = 219/328 (66%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           RE         +      LRP   + F GQ     NLKVF+EAA+ R EALDHVL  GPP
Sbjct: 9   REERTPPQSLSDLQQEEQLRPSYFDSFRGQGHVVDNLKVFVEAARRRDEALDHVLLYGPP 68

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTL+ +++ ELGV  + TSGPV+ KAGDLA LLT+LE RDVLFIDEIHRLS  VEE
Sbjct: 69  GLGKTTLSHIISHELGVGMKITSGPVLEKAGDLAGLLTSLEPRDVLFIDEIHRLSHTVEE 128

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
            LY AMEDF++DLM+ +GP ARS++I+L+ FTL+ ATTR GLLT PL+DRFGI + L +Y
Sbjct: 129 YLYSAMEDFRIDLMIDKGPGARSIQIDLNPFTLVGATTRSGLLTAPLRDRFGINLHLEYY 188

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           +++ L  IV R A++  +   +EAA  IA+RSRGTPRIA  LL+RVRDFA+V     I  
Sbjct: 189 DVDTLTDIVLRSARILEVPCEEEAARGIALRSRGTPRIANALLKRVRDFAQVKGNGVIDS 248

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
            I   AL  L IDK G D  D + L  I   F GGPVG+ TI+  + E    IE++ EP+
Sbjct: 249 NITTVALEALHIDKHGLDHTDHKLLKTIIDKFDGGPVGLSTIATAMGEDPGTIEEVYEPF 308

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           +IQ+GFIQRT  GR    +A+ HLG   
Sbjct: 309 LIQEGFIQRTRTGRQATRLAYAHLGRTY 336


>gi|284044635|ref|YP_003394975.1| Holliday junction DNA helicase RuvB [Conexibacter woesei DSM 14684]
 gi|283948856|gb|ADB51600.1| Holliday junction DNA helicase RuvB [Conexibacter woesei DSM 14684]
          Length = 338

 Score =  355 bits (911), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 174/331 (52%), Positives = 219/331 (66%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M    + +  V  E+     LRPR L+EF GQ      L V IEAA AR +ALDHVL  G
Sbjct: 1   MTIGRIQTPGVLPEEEVERSLRPRRLDEFVGQEAVREQLSVSIEAASARGDALDHVLLAG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKT+LAQ+VA ELGV F  T+GP + + GD+AA LT LE R V F+DEIHRL   +
Sbjct: 61  PPGLGKTSLAQIVAEELGVQFIQTAGPALERKGDVAAFLTALEPRAVFFVDEIHRLPRAL 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE  YPAMED QL + VG+G  A+ V ++L  FTL+ ATTR GLLT PL+DRFGI  RL 
Sbjct: 121 EETFYPAMEDGQLPITVGQGAGAKVVTLDLPPFTLVGATTRAGLLTTPLRDRFGIQHRLE 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
            Y  +DL  IV+R A L G+ V    A  IA RSRGTPR+A RLL+RVRD+AEV     +
Sbjct: 181 HYGPDDLGRIVRRSAALLGIEVEQAGARAIAARSRGTPRVANRLLKRVRDYAEVRGDGIV 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T ++A  AL  L +D MG D+LD   L  I   F GGPVG+ T++  + E +D IED+ E
Sbjct: 241 TEQVAAHALDLLQVDAMGLDRLDREVLRAICEMFSGGPVGLSTLAVAVGEEQDTIEDVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           PY++Q+G I+RTPRGR+    AW+HLG++ P
Sbjct: 301 PYLLQRGLIERTPRGRVATVRAWRHLGLEPP 331


>gi|289550594|ref|YP_003471498.1| Holliday junction DNA helicase RuvB [Staphylococcus lugdunensis
           HKU09-01]
 gi|289180126|gb|ADC87371.1| Holliday junction DNA helicase RuvB [Staphylococcus lugdunensis
           HKU09-01]
          Length = 334

 Score =  355 bits (911), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 169/327 (51%), Positives = 230/327 (70%), Gaps = 2/327 (0%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD + ++ ++  QED+     LRP  L+++ GQ    SNL+VFI+AAK R E LDHVL  
Sbjct: 1   MD-DRMVDQSFHQEDSAFEYSLRPTYLKQYIGQTTIKSNLEVFIQAAKLREEPLDHVLLF 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTL+ ++A E+ VN R+ SGP + + GDLAA+L+ L+  DVLFIDEIHRLS +
Sbjct: 60  GPPGLGKTTLSNIIANEMEVNIRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSV 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDF LD+++G+G  ARS++I+L  FTLI ATTR G LT PL+DRFG+ +RL
Sbjct: 120 VEEVLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLIGATTRAGSLTGPLRDRFGVHLRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y   +LK I+ R A + G ++ DE+A E+A RSRGTPR+A RLL+RVRDF +V     
Sbjct: 180 EYYNEHELKEIIIRTADVLGTSIDDESAVELAKRSRGTPRVANRLLKRVRDFQQVNGDDQ 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I  E    AL  L +D+ G D +D + +  I   + GGPVG++TI+  + E R  IED+ 
Sbjct: 240 IYIETTKKALKLLQVDEQGLDYIDHKMMNCIINQYQGGPVGLDTIAVSIGEERVTIEDVY 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHL 327
           EP++IQ+GFI+RTPRGR     A++H 
Sbjct: 300 EPFLIQKGFIERTPRGRKATAFAYEHF 326


>gi|296111817|ref|YP_003622199.1| holliday junction DNA helicase RuvB [Leuconostoc kimchii IMSNU
           11154]
 gi|295833349|gb|ADG41230.1| holliday junction DNA helicase RuvB [Leuconostoc kimchii IMSNU
           11154]
          Length = 352

 Score =  355 bits (911), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 164/323 (50%), Positives = 220/323 (68%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           S   + E  D   LRP+ L E+ GQ      L V+I AAK R EALDHVL  GPPGLGKT
Sbjct: 26  SEANALEQRDELSLRPQFLREYIGQSALKEELDVYISAAKQREEALDHVLLFGPPGLGKT 85

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           TLA ++A E+ V+ ++TSGP I K GDL ALL  LE  D+LFIDEIHRL   +EEI+Y A
Sbjct: 86  TLAMIIANEMAVHIKTTSGPAIEKPGDLVALLNELEPGDILFIDEIHRLPTNIEEIMYSA 145

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           MED+ +D+MVG+GP+AR+V   L  FTLI ATTR G+L+ PL+DRFGI   + +Y  E+L
Sbjct: 146 MEDYFVDIMVGQGPTARAVHFPLPPFTLIGATTRPGMLSKPLRDRFGIINSMAYYTPEEL 205

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           + IV R A +    +  + A E+A+RSRGTPRIA RLL+RVRDFA+V     I + I D 
Sbjct: 206 QEIVVRSADIFHAPIKPQGAYEVALRSRGTPRIANRLLKRVRDFAQVQGKDAIDKGIVDI 265

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL +L +D  G D+ D ++L  +   + GGPVG+ TI+A + E  + +E ++EPY++Q G
Sbjct: 266 ALNKLRVDNRGLDETDHKFLGTMIDYYNGGPVGLNTIAANIGEEAETLESMVEPYLLQIG 325

Query: 309 FIQRTPRGRLLMPIAWQHLGIDI 331
           F+QRTPRGR++  +A+QHL +  
Sbjct: 326 FLQRTPRGRVVTEVAYQHLKVPY 348


>gi|288906365|ref|YP_003431587.1| Holliday junction DNA helicase RuvB [Streptococcus gallolyticus
           UCN34]
 gi|306832410|ref|ZP_07465563.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|325979378|ref|YP_004289094.1| Holliday junction DNA helicase RuvB [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
 gi|288733091|emb|CBI14672.1| Holliday junction DNA helicase RuvB [Streptococcus gallolyticus
           UCN34]
 gi|304425450|gb|EFM28569.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|325179306|emb|CBZ49350.1| Holliday junction DNA helicase RuvB [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
          Length = 332

 Score =  355 bits (911), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 169/323 (52%), Positives = 228/323 (70%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +  E+     LRP+ L+E+ GQ +  + LK+FIEAAK R E+LDHVL  GPPGLGKTT+A
Sbjct: 10  MGDEEFAERTLRPQFLKEYIGQDKVKNQLKIFIEAAKLRDESLDHVLLFGPPGLGKTTMA 69

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            V+A ELGVN + TSGP I KAGDL A+L +LE  DVLFIDEIHR+ + VEE+LY AMED
Sbjct: 70  FVIANELGVNLKQTSGPAIEKAGDLVAILNDLEPGDVLFIDEIHRMPMAVEEVLYSAMED 129

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F +D+M+G G ++RSV ++L  FTLI ATTR G+L+NPL+ RFGI   + +Y++EDL  I
Sbjct: 130 FYIDIMIGNGETSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYDVEDLTEI 189

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           V+R A +  + +  EAA E+A RSRGTPRIA RLL+RVRD+A++     IT++I D AL 
Sbjct: 190 VERTADIFEMEIVHEAAQELARRSRGTPRIANRLLKRVRDYAQIMGDGIITKDITDKALT 249

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L +D  G D +D + L  +   + GGPVG+ T+S  ++E RD +ED+ EPY+IQ+GFI 
Sbjct: 250 MLDVDHEGLDYIDQKILRTMIEVYNGGPVGLGTLSVNIAEERDTVEDMYEPYLIQKGFIM 309

Query: 312 RTPRGRLLMPIAWQHLGIDIPHR 334
           RT  GR+    A++HLG     +
Sbjct: 310 RTRTGRVATEKAYEHLGYPYSEK 332


>gi|291459000|ref|ZP_06598390.1| holliday junction DNA helicase RuvB [Oribacterium sp. oral taxon
           078 str. F0262]
 gi|291418254|gb|EFE91973.1| holliday junction DNA helicase RuvB [Oribacterium sp. oral taxon
           078 str. F0262]
          Length = 336

 Score =  355 bits (911), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 171/329 (51%), Positives = 230/329 (69%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M+R  + +   S++ +    +RP+ L ++ GQ +    L V+I AAK RA++LDH LF G
Sbjct: 1   MERRIINTEESSEDRSFEPAIRPQLLSDYIGQRKLKEMLSVYIRAAKNRAQSLDHCLFYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTT+A ++A ELGVN + TSGP I K G++AALL NL + DVLF+DEIHRL+  V
Sbjct: 61  PPGLGKTTIANIIAHELGVNIKVTSGPAIEKPGEMAALLNNLSEGDVLFVDEIHRLNRQV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMEDF +D+M+G+  S+RS+++ L  FTLI ATTR GLL+ PL+DRFGI  +L 
Sbjct: 121 EEVLYPAMEDFAIDIMLGKDASSRSIRLELPHFTLIGATTRAGLLSAPLRDRFGIIAKLE 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FYE  +L+ IV R A++  + +  E A  IA+RSRGTPR+A RLLRR RDFA++ +   I
Sbjct: 181 FYETAELEEIVLRSARVLKVEIEPEGARRIALRSRGTPRLANRLLRRTRDFADIRYEGRI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T E AD AL  L +D++G DQ D  YL  I   F GGPVG+ET++A L E    IED+ E
Sbjct: 241 TAEAADYALDILDVDRLGLDQNDRSYLLTIMEKFSGGPVGLETLAASLGEDSGTIEDVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           PY++  G I RTPRGR+    A++HLG+ 
Sbjct: 301 PYLLMNGLIMRTPRGRVATERAYRHLGLP 329


>gi|242280345|ref|YP_002992474.1| Holliday junction DNA helicase RuvB [Desulfovibrio salexigens DSM
           2638]
 gi|242123239|gb|ACS80935.1| Holliday junction DNA helicase RuvB [Desulfovibrio salexigens DSM
           2638]
          Length = 327

 Score =  355 bits (911), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 176/314 (56%), Positives = 230/314 (73%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           + +     +RP+ L +F GQ +   NL VFI+AA+ R  A+DH LF G PGLGKTTLA++
Sbjct: 2   ENNGSDDHIRPQRLTDFIGQDDLRDNLDVFIQAARGRGNAMDHALFYGNPGLGKTTLARI 61

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +A ELGVN  STSGPV+ ++GDLAA+LTNL   D+LFIDEIHR+   VEE+LYPAMEDF 
Sbjct: 62  IASELGVNLISTSGPVLERSGDLAAILTNLSRNDILFIDEIHRVPATVEEVLYPAMEDFN 121

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           +DL++G+GP+AR+VKI+L  FTL+ ATTR+GLLT+PL+DRFG   RL FY  E+L  IV 
Sbjct: 122 IDLIIGQGPAARTVKIDLEPFTLVGATTRLGLLTSPLRDRFGCIFRLEFYSPEELARIVT 181

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A++  L VTDE A  I  RSRGTPRIA RLLRRVRDFA V     ++ E+AD AL +L
Sbjct: 182 RAARIFDLKVTDEGALIIGKRSRGTPRIANRLLRRVRDFATVHGDGVVSGELADMALNKL 241

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D +G D +D + L+++   FGGGPVG++TI+   SE    IE++ EPY+IQ GF++RT
Sbjct: 242 DVDPLGLDYMDRKILSILIDQFGGGPVGVKTIAVACSEEVRTIEEIYEPYLIQCGFMKRT 301

Query: 314 PRGRLLMPIAWQHL 327
           PRGR+    A+QHL
Sbjct: 302 PRGRVATARAYQHL 315


>gi|189460625|ref|ZP_03009410.1| hypothetical protein BACCOP_01266 [Bacteroides coprocola DSM 17136]
 gi|189432584|gb|EDV01569.1| hypothetical protein BACCOP_01266 [Bacteroides coprocola DSM 17136]
          Length = 342

 Score =  355 bits (911), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 170/329 (51%), Positives = 234/329 (71%), Gaps = 1/329 (0%)

Query: 1   MMDREGLLSRNVSQEDAD-ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M ++  +     + ++ D  + LRP    +F+GQ +   NL++F++AA+ RAEALDHVL 
Sbjct: 1   MEEQFDIRDYKPTGKERDFENALRPLQFGDFSGQDKVVDNLRIFVKAARLRAEALDHVLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTL+ ++A ELGV F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS 
Sbjct: 61  HGPPGLGKTTLSNIIANELGVGFKVTSGPVLDKPGDLAGVLTSLEPNDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE LY AMED+++D+M+ +GPSARS++++L+ FTL+ ATTR GLLT PL+ RFGI + 
Sbjct: 121 VVEEYLYSAMEDYRIDIMIDKGPSARSIQLDLNPFTLVGATTRSGLLTAPLRARFGINLH 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y+   L  I+ R A + G+    +AA EIA RSRGTPRIA  LLRRVRDFA+V  + 
Sbjct: 181 LEYYDDAVLSRIILRSASILGIPCDVDAAGEIASRSRGTPRIANALLRRVRDFAQVKGSG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  EIA  AL  L ID+ G D++D + L  I   F GGPVG+ TI+  L E    +E++
Sbjct: 241 RIDVEIARYALEALNIDRYGLDEIDNKILCTIIDKFKGGPVGLTTIATALGEDPGTLEEV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
            EP++I++GF++RTPRGR +  +A++HLG
Sbjct: 301 YEPFLIKEGFLKRTPRGREVTELAYKHLG 329


>gi|148244816|ref|YP_001219510.1| Holliday junction DNA helicase RuvB [Candidatus Vesicomyosocius
           okutanii HA]
 gi|166231568|sp|A5CW96|RUVB_VESOH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|146326643|dbj|BAF61786.1| holliday junction DNA helicase RuvB [Candidatus Vesicomyosocius
           okutanii HA]
          Length = 342

 Score =  355 bits (911), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 178/330 (53%), Positives = 243/330 (73%), Gaps = 1/330 (0%)

Query: 1   MMDREGLLS-RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+  ++ + ED  I+ +RP +LE + GQ +  S + +FI+AAK R + LDH L 
Sbjct: 1   MIEEDLLIDEKDHNNEDLVITSIRPNSLENYIGQNDVKSQMMLFIKAAKKRKDTLDHCLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA V+A ++   F+ TSGPV+ +AGDLAA+LT L+  D+LFIDEIHRL+ 
Sbjct: 61  YGPPGLGKTTLANVIANQMSTGFKKTSGPVLERAGDLAAILTKLDPYDILFIDEIHRLNY 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE LYPA+EDF+LD++VGEG ++ SV++ L  FTLI ATTRVG+LT+PL+DRFGI  R
Sbjct: 121 VVEETLYPALEDFKLDIIVGEGLASHSVQLELPPFTLIGATTRVGMLTSPLRDRFGIIQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY +EDLK IV+R A +  + +  + A EIA RSRGTPRIA RLLRRVRDFA+V    
Sbjct: 181 LQFYNVEDLKMIVERSADILDIQIESKGALEIAKRSRGTPRIANRLLRRVRDFADVKANS 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I ++IA  AL+ L +D+ G +QLD  YL++I   F GGPVG++T++  + E R  +ED+
Sbjct: 241 MIHQDIAKEALIILKVDEAGLEQLDRDYLSIIMNKFSGGPVGLDTLATSIGEERGTLEDM 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           +EPY+IQQGFI RTPRGR +   A+ HLG+
Sbjct: 301 VEPYLIQQGFIMRTPRGRSITDAAYAHLGL 330


>gi|297181901|gb|ADI18078.1| holliday junction resolvasome, helicase subunit [uncultured
           Acidobacteriales bacterium HF0200_23L05]
          Length = 339

 Score =  355 bits (911), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 187/334 (55%), Positives = 236/334 (70%), Gaps = 1/334 (0%)

Query: 2   MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M+ E +LS     EDA     LRPR L+++ GQ     NL V I A + R EALDHVL  
Sbjct: 1   MNTENILSTVQVDEDAQYEAGLRPRHLDDYIGQDRVRENLTVAITATRNREEALDHVLLY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA V+  ELGV  R TSGPV+ K GDLAALLTNL+DR+VLFIDEIHR+S  
Sbjct: 61  GPPGLGKTTLAYVIGNELGVQVRGTSGPVLEKPGDLAALLTNLKDREVLFIDEIHRMSSA 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EEILY AMED++LD+++G+GP ARSVK+ L +FTLI ATTR GLLT+PL+ RFG+  RL
Sbjct: 121 IEEILYSAMEDYELDIVIGQGPGARSVKVPLQKFTLIGATTRAGLLTSPLRARFGLVHRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           +FY   DL  I+ R A++  + + DEA  E+A RSRGTPR+A RLLRRVRD+AEV     
Sbjct: 181 DFYTESDLVEIISRSARILDVPIVDEATGELARRSRGTPRVANRLLRRVRDYAEVRADGR 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           IT ++A  AL  L +D  GFD+ D R L  I   F GGPVG+ +I+A +SE ++AIED+ 
Sbjct: 241 ITIDVARQALTLLEVDDQGFDEADRRLLRAIIDKFNGGPVGLNSIAAAISEEKEAIEDIY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           EPY+IQ GF+ RTPRGR+    A+ + G+  P R
Sbjct: 301 EPYLIQLGFLDRTPRGRVATARAYDYFGLPTPDR 334


>gi|260424675|ref|ZP_05732906.2| holliday junction DNA helicase RuvB [Dialister invisus DSM 15470]
 gi|260402788|gb|EEW96335.1| holliday junction DNA helicase RuvB [Dialister invisus DSM 15470]
          Length = 361

 Score =  355 bits (911), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 171/323 (52%), Positives = 226/323 (69%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            + +   S+ D     +RP+ L ++ GQ     NL V+I AA++R EALDHVL  GPPGL
Sbjct: 23  RITAGEGSRRDEWQQTIRPQRLSDYIGQSTFKENLHVYISAARSRKEALDHVLLYGPPGL 82

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTT+A++++ ELGV F+ TSGP I + GDLAA+L+ L++ DVLFIDEIHRL+  VEEIL
Sbjct: 83  GKTTMAKIISNELGVQFKVTSGPAIGRPGDLAAILSTLQEHDVLFIDEIHRLNRSVEEIL 142

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           YPAMEDF LD+++G+G  A S++I L  FTLI ATTR G L+ PL+DRFGI   + FY  
Sbjct: 143 YPAMEDFALDIVMGKGAGANSIRIELPPFTLIGATTRAGALSAPLRDRFGIINHMQFYTA 202

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           ++LK I+ R A +  + + +  A EIA RSRGTPRIA RLL+R+RDFA+V     I++EI
Sbjct: 203 DELKHILIRAAGILNIKIEETGAEEIARRSRGTPRIANRLLKRIRDFAQVKGEGVISQEI 262

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           A  +L  L +D +G D +D   L  I + F GGPVGI+TISA +SE R  IED+ EPY++
Sbjct: 263 AADSLSALYVDDIGLDLIDREVLKAIIQKFNGGPVGIDTISASISEERATIEDICEPYLM 322

Query: 306 QQGFIQRTPRGRLLMPIAWQHLG 328
           Q GFI RTPRGR+    A+ HLG
Sbjct: 323 QIGFISRTPRGRIATKAAYDHLG 345


>gi|326791464|ref|YP_004309285.1| Holliday junction ATP-dependent DNA helicase ruvB [Clostridium
           lentocellum DSM 5427]
 gi|326542228|gb|ADZ84087.1| Holliday junction ATP-dependent DNA helicase ruvB [Clostridium
           lentocellum DSM 5427]
          Length = 331

 Score =  355 bits (911), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 170/329 (51%), Positives = 239/329 (72%), Gaps = 1/329 (0%)

Query: 4   REGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
            + ++S ++  ED +I   +RP TL ++ GQ     N+K+FIEAAK R EALDHVL  GP
Sbjct: 2   EKRIMSSDLQLEDNEIESNIRPLTLSDYIGQTAIKENIKIFIEAAKQRGEALDHVLLYGP 61

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTT+A V+A E+GV F+ TSGP I K GD+AA+L NL+  D+LFIDEIHR+S  VE
Sbjct: 62  PGLGKTTMAGVIASEMGVKFKVTSGPAIEKPGDIAAILNNLQHGDILFIDEIHRMSRHVE 121

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LY AMED+ +D++VG+GP+A+S+++ L +FTLI ATTR G+L++PL+DRFGI  RL +
Sbjct: 122 EVLYSAMEDYCIDIVVGKGPAAKSIRLTLPKFTLIGATTRAGMLSSPLRDRFGIIQRLEY 181

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y +++L  I++R A +    +T+EAA E+A  SRGTPR+A RLL+RVRD A + +   I 
Sbjct: 182 YTMQELGCILKRTAAILQTPITEEAALELAKCSRGTPRVANRLLKRVRDIALIKYDNHID 241

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            E+   AL  L+ID+ G D +D R +  IA  F GGPVG++T++A + E RD +ED+ EP
Sbjct: 242 EEVCTKALELLSIDRNGLDDIDRRIIQAIALQFKGGPVGLDTLAAAIGEERDTLEDVYEP 301

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           Y+IQQG++QRTPRGR+L P A++   +  
Sbjct: 302 YLIQQGYMQRTPRGRMLAPKAYETFELKT 330


>gi|302190966|ref|ZP_07267220.1| Holliday junction DNA helicase RuvB [Lactobacillus iners AB-1]
 gi|309805312|ref|ZP_07699363.1| Holliday junction DNA helicase RuvB [Lactobacillus iners LactinV
           09V1-c]
 gi|309805989|ref|ZP_07700015.1| Holliday junction DNA helicase RuvB [Lactobacillus iners LactinV
           03V1-b]
 gi|309809682|ref|ZP_07703538.1| Holliday junction DNA helicase RuvB [Lactobacillus iners SPIN
           2503V10-D]
 gi|312870741|ref|ZP_07730848.1| Holliday junction DNA helicase RuvB [Lactobacillus iners LEAF
           3008A-a]
 gi|312875204|ref|ZP_07735217.1| Holliday junction DNA helicase RuvB [Lactobacillus iners LEAF
           2053A-b]
 gi|329919592|ref|ZP_08276581.1| Holliday junction DNA helicase RuvB [Lactobacillus iners SPIN
           1401G]
 gi|308165388|gb|EFO67620.1| Holliday junction DNA helicase RuvB [Lactobacillus iners LactinV
           09V1-c]
 gi|308167592|gb|EFO69745.1| Holliday junction DNA helicase RuvB [Lactobacillus iners LactinV
           03V1-b]
 gi|308170042|gb|EFO72079.1| Holliday junction DNA helicase RuvB [Lactobacillus iners SPIN
           2503V10-D]
 gi|311089311|gb|EFQ47742.1| Holliday junction DNA helicase RuvB [Lactobacillus iners LEAF
           2053A-b]
 gi|311093753|gb|EFQ52090.1| Holliday junction DNA helicase RuvB [Lactobacillus iners LEAF
           3008A-a]
 gi|328937397|gb|EGG33819.1| Holliday junction DNA helicase RuvB [Lactobacillus iners SPIN
           1401G]
          Length = 334

 Score =  355 bits (910), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 168/334 (50%), Positives = 229/334 (68%), Gaps = 1/334 (0%)

Query: 2   MDREGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M ++ L S   +  E A    LRP  L ++ GQ +  S + ++I+AAK R E+LDHVL  
Sbjct: 1   MTKDNLFSSESTPMEQATELSLRPSNLSQYIGQEKVKSEMAIYIKAAKQRDESLDHVLLY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTT+A V+A ELGV  +STSGP I KAGDL ALL+ L+  DVLFIDEIHRL+  
Sbjct: 61  GPPGLGKTTMAFVIANELGVTLKSTSGPAIDKAGDLVALLSELKPGDVLFIDEIHRLAKT 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILY AMEDF +D+MVGEG +A +V + LS FTLI ATTR G L+ PL+DRFGI   +
Sbjct: 121 VEEILYSAMEDFYVDIMVGEGSAAHAVHVPLSPFTLIGATTRAGQLSAPLRDRFGIVEHM 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y  ++L+ I++R +++    +  EAA E+A RSRGTPR+A RLL+R+RDFAEV    +
Sbjct: 181 QYYSEDELQQIIERSSRVLETGINIEAAHELARRSRGTPRVANRLLKRIRDFAEVNGETS 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I+      AL +L +D  G DQ+D + L ++   + GGPVGI+T++A + E  + I ++ 
Sbjct: 241 ISLLTTKHALAKLEVDDEGLDQIDRKILKIMINCYHGGPVGIKTLAANIGEDVETISEVY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           EPY++Q+GFI RTPRGR+    A+  LGI +  R
Sbjct: 301 EPYLLQKGFISRTPRGRVANAKAYVQLGISLDTR 334


>gi|312872871|ref|ZP_07732933.1| Holliday junction DNA helicase RuvB [Lactobacillus iners LEAF
           2062A-h1]
 gi|312873748|ref|ZP_07733793.1| Holliday junction DNA helicase RuvB [Lactobacillus iners LEAF
           2052A-d]
 gi|311090746|gb|EFQ49145.1| Holliday junction DNA helicase RuvB [Lactobacillus iners LEAF
           2052A-d]
 gi|311091605|gb|EFQ49987.1| Holliday junction DNA helicase RuvB [Lactobacillus iners LEAF
           2062A-h1]
          Length = 334

 Score =  355 bits (910), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 168/334 (50%), Positives = 229/334 (68%), Gaps = 1/334 (0%)

Query: 2   MDREGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M ++ L S   +  E A    LRP  L ++ GQ +  S + ++I+AAK R E+LDHVL  
Sbjct: 1   MTKDNLFSGESTPVEQATELSLRPSNLSQYIGQEKVKSEMAIYIKAAKQRDESLDHVLLY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTT+A V+A ELGV  +STSGP I KAGDL ALL+ L+  DVLFIDEIHRL+  
Sbjct: 61  GPPGLGKTTMAFVIANELGVTLKSTSGPAIDKAGDLVALLSELKPGDVLFIDEIHRLAKT 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILY AMEDF +D+MVGEG +A +V + LS FTLI ATTR G L+ PL+DRFGI   +
Sbjct: 121 VEEILYSAMEDFYVDIMVGEGSAAHAVHVPLSPFTLIGATTRAGQLSAPLRDRFGIVEHM 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y  ++L+ I++R +++    +  EAA E+A RSRGTPR+A RLL+R+RDFAEV    +
Sbjct: 181 QYYSEDELQQIIERSSRVLETGINIEAAHELARRSRGTPRVANRLLKRIRDFAEVNGETS 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I+      AL +L +D  G DQ+D + L ++   + GGPVGI+T++A + E  + I ++ 
Sbjct: 241 ISLLTTKHALAKLEVDDEGLDQIDRKILKIMINCYHGGPVGIKTLAANIGEDVETISEVY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           EPY++Q+GFI RTPRGR+    A+  LGI +  R
Sbjct: 301 EPYLLQKGFISRTPRGRVANAKAYVQLGISLDTR 334


>gi|325911944|ref|ZP_08174347.1| Holliday junction DNA helicase RuvB [Lactobacillus iners UPII
           143-D]
 gi|325476246|gb|EGC79409.1| Holliday junction DNA helicase RuvB [Lactobacillus iners UPII
           143-D]
          Length = 334

 Score =  355 bits (910), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 168/334 (50%), Positives = 229/334 (68%), Gaps = 1/334 (0%)

Query: 2   MDREGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M ++ L S   +  E A    LRP  L ++ GQ +  S + ++I+AAK R E+LDHVL  
Sbjct: 1   MTKDNLFSGESTPMEQATELSLRPSNLSQYIGQEKVKSEMAIYIKAAKQRDESLDHVLLY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTT+A V+A ELGV  +STSGP I KAGDL ALL+ L+  DVLFIDEIHRL+  
Sbjct: 61  GPPGLGKTTMAFVIANELGVTVKSTSGPAIDKAGDLVALLSELKPGDVLFIDEIHRLAKT 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILY AMEDF +D+MVGEG +A +V + LS FTLI ATTR G L+ PL+DRFGI   +
Sbjct: 121 VEEILYSAMEDFYVDIMVGEGSAAHAVHVPLSPFTLIGATTRAGQLSAPLRDRFGIVEHM 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y  ++L+ I++R +++    +  EAA E+A RSRGTPR+A RLL+R+RDFAEV    +
Sbjct: 181 QYYSEDELQQIIERSSRVLETGINIEAAHELARRSRGTPRVANRLLKRIRDFAEVNGETS 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I+      AL +L +D  G DQ+D + L ++   + GGPVGI+T++A + E  + I ++ 
Sbjct: 241 ISLLTTKHALAKLEVDDEGLDQIDRKILKIMINCYHGGPVGIKTLAANIGEDVETISEVY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           EPY++Q+GFI RTPRGR+    A+  LGI +  R
Sbjct: 301 EPYLLQKGFISRTPRGRVANAKAYVQLGISLDTR 334


>gi|239629699|ref|ZP_04672730.1| holliday junction ATP-dependent DNA helicase ruvB [Lactobacillus
           paracasei subsp. paracasei 8700:2]
 gi|301065825|ref|YP_003787848.1| holliday junction resolvasome, helicase subunit [Lactobacillus
           casei str. Zhang]
 gi|239528385|gb|EEQ67386.1| holliday junction ATP-dependent DNA helicase ruvB [Lactobacillus
           paracasei subsp. paracasei 8700:2]
 gi|300438232|gb|ADK17998.1| Holliday junction resolvasome, helicase subunit [Lactobacillus
           casei str. Zhang]
          Length = 338

 Score =  355 bits (910), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 173/330 (52%), Positives = 229/330 (69%), Gaps = 2/330 (0%)

Query: 3   DREGLLSRNV--SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           D++ L+S +V  S E      LRPR L ++ GQ      L+V+I AAK R E+LDHVL  
Sbjct: 5   DKDRLVSGDVDDSNEAQIEKSLRPRMLAQYIGQDRVKHQLEVYITAAKQREESLDHVLLY 64

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA V+A ELGVN R+TSGP I K GDL ALL  L   DVLFIDEIHRL  I
Sbjct: 65  GPPGLGKTTLALVIANELGVNIRTTSGPAIEKPGDLVALLNELHPGDVLFIDEIHRLPKI 124

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LY AMEDF +D++VG+GP+A  V   L  FTLI ATTR G+L+ PL+DRFGI   +
Sbjct: 125 VEEMLYSAMEDFYIDIVVGQGPTAHPVHFPLPPFTLIGATTRAGMLSAPLRDRFGISEHM 184

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y  +DL  IV+R A +  +A+  E A EIA RSRGTPR+A RLL+R+RDFAEVA    
Sbjct: 185 AYYSADDLSEIVKRSATIFDMAIDAEGAHEIARRSRGTPRVANRLLKRIRDFAEVAGQSP 244

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +  ++ D AL +L +D+ G DQ+D + L  + R++ GGPVG+ TI+A + E    IE++ 
Sbjct: 245 VDIQMVDHALDQLQVDQQGLDQIDRKLLMFMIRDYEGGPVGLSTIAANIGEEMATIEEMY 304

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           EPY++Q G+++RTPRGR++ P  + H+G+ 
Sbjct: 305 EPYLLQIGYLKRTPRGRMVTPAGFAHMGLS 334


>gi|298490930|ref|YP_003721107.1| Holliday junction DNA helicase RuvB ['Nostoc azollae' 0708]
 gi|298232848|gb|ADI63984.1| Holliday junction DNA helicase RuvB ['Nostoc azollae' 0708]
          Length = 371

 Score =  355 bits (910), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 162/331 (48%), Positives = 221/331 (66%), Gaps = 2/331 (0%)

Query: 5   EGLLSRNVS--QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           E +L  + +  +E      +RP+   ++ GQ +    L + IEAAK+R E +DH+L  GP
Sbjct: 35  ENILQPDAAINEEGRQEESIRPQRFADYIGQKDLKDVLDIAIEAAKSRGEIIDHLLLYGP 94

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTT+A ++A E+GVN + TS P + +  D+  LL NL+  DVLF+DEIHRLS + E
Sbjct: 95  PGLGKTTMAMILASEMGVNCKITSAPALERPRDIVGLLVNLKPGDVLFVDEIHRLSRMTE 154

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILYPAMED++LD+ VG+G SAR   I LS+FTL+ ATTRVG LT+PL++RFG+  +L F
Sbjct: 155 EILYPAMEDYRLDITVGKGSSARIRSIPLSKFTLVGATTRVGALTSPLRERFGLIQKLRF 214

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           YE+++L  IV R A+L    V    A EIA RSRGTPRIA RLL+RVRD+AEV     I 
Sbjct: 215 YEVDELSRIVIRTAELLKTTVNCSGATEIAKRSRGTPRIANRLLKRVRDYAEVKSRTEIN 274

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             +A  AL    +D  G D  D + L++I  NF GGPVG+ET++A   E    IE++ EP
Sbjct: 275 ETVAAEALQLFQVDPCGLDWTDRKMLSVIIENFNGGPVGLETLAAATGEDTQTIEEVYEP 334

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           Y++Q G++ RTPRGR+    A+QH+G   P+
Sbjct: 335 YLMQIGYLSRTPRGRVATKAAYQHMGFKPPN 365


>gi|269216142|ref|ZP_06159996.1| holliday junction DNA helicase RuvB [Slackia exigua ATCC 700122]
 gi|269130401|gb|EEZ61479.1| holliday junction DNA helicase RuvB [Slackia exigua ATCC 700122]
          Length = 366

 Score =  355 bits (910), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 174/325 (53%), Positives = 236/325 (72%), Gaps = 1/325 (0%)

Query: 6   GLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
            +++  ++++D A    LRP+ L ++ GQ     +L + I+AA+ R E +DHVLF GPPG
Sbjct: 39  RVVAPELTEDDLALDRSLRPKRLIDYLGQTRIKESLSILIQAARQRGECMDHVLFSGPPG 98

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLA VVA EL  N R+TSGP IA+ GDLAA+LTNLED DVLFIDEIHRL+  VEE+
Sbjct: 99  LGKTTLATVVANELDANIRTTSGPAIARPGDLAAILTNLEDGDVLFIDEIHRLNRQVEEV 158

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPA+ED+ LD++VG+GP+ARS++++L RFTL+ ATTR GLLT PL+DRFGI  RLN+Y 
Sbjct: 159 LYPALEDYVLDIVVGKGPAARSIRLDLPRFTLVGATTRTGLLTGPLRDRFGIAFRLNYYT 218

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            E+L  IV R A +  + +  + A EIA RSRGTPR+A RLL+RVRD+A+V     I  +
Sbjct: 219 PEELSDIVARSAGILDVPIDADGAIEIARRSRGTPRLANRLLKRVRDWAQVRGTGIIDED 278

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +A  AL    +D +G D LD R L ++  +FGG  VG+ T+++ LSE +D +ED+ EP++
Sbjct: 279 VAAQALSFFEVDSLGLDALDNRILELLCVSFGGRAVGLSTLASALSEDQDTVEDVYEPFL 338

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGI 329
           IQQG I RTP+GRL    A++H+GI
Sbjct: 339 IQQGLIIRTPKGRLATDRAYEHMGI 363


>gi|302344654|ref|YP_003809183.1| Holliday junction DNA helicase RuvB [Desulfarculus baarsii DSM
           2075]
 gi|301641267|gb|ADK86589.1| Holliday junction DNA helicase RuvB [Desulfarculus baarsii DSM
           2075]
          Length = 340

 Score =  355 bits (910), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 180/325 (55%), Positives = 234/325 (72%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            L+    ++ED  +  LRP +L EF GQ EA +NL+VFI AA+ R EALDHVL  G PGL
Sbjct: 9   RLVCGAAAEEDRALDSLRPTSLAEFVGQEEAKANLRVFIAAARQRGEALDHVLLHGHPGL 68

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLA ++ARELGV   +TSGPV+ +AGDLAA+LTNL  RDVLF+DEIHRL+ +VEE+L
Sbjct: 69  GKTTLAHIIARELGVEVTATSGPVLERAGDLAAILTNLGPRDVLFVDEIHRLNHVVEEVL 128

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           YPAMEDF LD++VG+GPSAR+VK+NL  FTL+ ATTR GLLT PL+DRFG+ +R++ Y  
Sbjct: 129 YPAMEDFHLDIVVGQGPSARTVKLNLEPFTLVGATTRAGLLTPPLRDRFGVQVRVDMYTP 188

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           E+L +IV R A+L GL ++ E A EIA RSR TPR+A RLL+RVRDFA+V  A      +
Sbjct: 189 EELASIVGRSARLLGLDISPEGAAEIARRSRATPRVANRLLKRVRDFAQVEAAGHADLAL 248

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
            D AL RL +D+ G D+LD   L+ I + F GGPVG+  ++A + E    IE++ EPY+I
Sbjct: 249 CDYALGRLGVDQNGLDRLDRDLLSAIVQKFDGGPVGLSNLAAAVGEEAQTIEEVYEPYLI 308

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGID 330
           QQG ++RT  GR+    A +  G  
Sbjct: 309 QQGLLKRTKAGRVATGRALELFGFT 333


>gi|169333982|ref|ZP_02861175.1| hypothetical protein ANASTE_00374 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258699|gb|EDS72665.1| hypothetical protein ANASTE_00374 [Anaerofustis stercorihominis DSM
           17244]
          Length = 347

 Score =  355 bits (910), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 167/329 (50%), Positives = 228/329 (69%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M    + S+    +      LRP TL E+ GQ      ++VFI AAK R EALDHVL  G
Sbjct: 1   MATRIVTSKKTELDIEKDKSLRPSTLGEYIGQETVKERMRVFISAAKQRGEALDHVLLYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTL+ ++A ELGV+ + TSGP I K GDLAA+L+ L+  DVLFIDEIHRL+  +
Sbjct: 61  PPGLGKTTLSNIIANELGVSIKVTSGPAIEKPGDLAAILSGLKKNDVLFIDEIHRLNRTI 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMED+  D+++G+GP+A+SV+I ++ FTLI ATTR GLL++PL+DRFG+  +L 
Sbjct: 121 EEVLYPAMEDYAFDIVMGKGPNAKSVRIPIAPFTLIGATTRTGLLSSPLRDRFGVLNKLE 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
            Y+IE+L  I++R + +  + + DE A EIA+RSR TPRIA R L+RVRD+A+V ++  I
Sbjct: 181 MYKIEELMEIIKRSSGILDIDIDDEGAKEIAIRSRQTPRIANRFLKRVRDYAQVKNSDMI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
             +IA  AL  L +D+ G D  D+  L  I   F GGPVG+ T+SA + E  D I D+ E
Sbjct: 241 NGKIAVEALKLLDVDENGLDSSDIGILDAIINKFDGGPVGLNTLSAIIGEEEDTILDVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           PY++Q GFI RTPRGR+   +A+ +LG+ 
Sbjct: 301 PYLLQLGFINRTPRGRVATKLAYDYLGVP 329


>gi|119511346|ref|ZP_01630459.1| Holliday junction DNA helicase RuvB [Nodularia spumigena CCY9414]
 gi|119463968|gb|EAW44892.1| Holliday junction DNA helicase RuvB [Nodularia spumigena CCY9414]
          Length = 367

 Score =  355 bits (910), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 156/332 (46%), Positives = 222/332 (66%), Gaps = 2/332 (0%)

Query: 4   REGLLSRNVSQEDA--DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           +E +L    + ++       +RP+   ++ GQ +    L + I+AAK+R E LDH+L  G
Sbjct: 30  KENILQPEAATDEQGKQEESIRPQQFADYIGQKDLKDVLDIAIKAAKSRGEVLDHLLLYG 89

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTT+A ++A E+GV+++ TS P + +  D+  LL NL+  DVLF+DEIHRLS + 
Sbjct: 90  PPGLGKTTMAMILASEMGVDYKITSAPALERPRDIVGLLVNLKPGDVLFVDEIHRLSRMT 149

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILYPAMED++LD+ VG+G  AR   I L++FTL+ ATTRVG L++PL+DRFG+  +L 
Sbjct: 150 EEILYPAMEDYRLDITVGKGAGARIRSIPLNKFTLVGATTRVGALSSPLRDRFGLVQKLR 209

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FYE+++L  IV R A      + ++ A EIA R+RGTPRIA RLL+RVRD+AEV  +  I
Sbjct: 210 FYEVDELTKIVLRSADFLKTPIAEDGATEIARRARGTPRIANRLLKRVRDYAEVKLSGEI 269

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T  +A  AL    +D  G D  D R L++I   F GGPVG+ET++A   E    IE++ E
Sbjct: 270 TEIVASEALQLFQVDPCGLDWTDRRMLSVIIEQFNGGPVGLETVAAATGEDTQTIEEVYE 329

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           PY++Q G++ RTPRGR+    A++HLG   P+
Sbjct: 330 PYLMQIGYLSRTPRGRIATTSAYKHLGFKPPN 361


>gi|260060661|ref|YP_003193741.1| Holliday junction DNA helicase RuvB [Robiginitalea biformata
           HTCC2501]
 gi|88784791|gb|EAR15960.1| Holliday junction DNA helicase RuvB [Robiginitalea biformata
           HTCC2501]
          Length = 340

 Score =  355 bits (910), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 179/318 (56%), Positives = 230/318 (72%), Gaps = 1/318 (0%)

Query: 12  VSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           +S E+ DI   LRP + ++FTGQ +   NL VF++AA  R EALDH L  GPPGLGKTTL
Sbjct: 12  LSPEELDIERALRPVSFDDFTGQAQVLENLTVFVQAANLRQEALDHTLLHGPPGLGKTTL 71

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           A ++A ELGV  + TSGPV+ K GDLA LLTNLE RDVLFIDEIHRLS +VEE LY AME
Sbjct: 72  AHILANELGVGLKVTSGPVLDKPGDLAGLLTNLEPRDVLFIDEIHRLSPVVEEYLYSAME 131

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           DF++D+M+  GP+ARSV+++L+ FTL+ ATTR GLLT P++ RFGI  RL +Y  E L T
Sbjct: 132 DFKIDIMIETGPNARSVQLHLNPFTLVGATTRSGLLTAPMRARFGISSRLEYYNTELLAT 191

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           IVQR A++  + +T++AA EIA RSRGTPRI   LLRRVRDFA++     I  EI+   L
Sbjct: 192 IVQRSAEILKVPITEDAAIEIAGRSRGTPRICNALLRRVRDFAQIKGNGNIDMEISRFGL 251

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
             L +D  G D++D + L  I   F GGPVG+ T++  +SE  + IE++ EP++IQQGFI
Sbjct: 252 KALHVDAYGLDEMDNKILATIIDKFKGGPVGLTTLATAVSENAETIEEVYEPFLIQQGFI 311

Query: 311 QRTPRGRLLMPIAWQHLG 328
            RTPRGR +  +A+QHLG
Sbjct: 312 MRTPRGREVTELAYQHLG 329


>gi|325281458|ref|YP_004254000.1| Holliday junction ATP-dependent DNA helicase ruvB [Odoribacter
           splanchnicus DSM 20712]
 gi|324313267|gb|ADY33820.1| Holliday junction ATP-dependent DNA helicase ruvB [Odoribacter
           splanchnicus DSM 20712]
          Length = 342

 Score =  354 bits (909), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 170/328 (51%), Positives = 228/328 (69%), Gaps = 1/328 (0%)

Query: 2   MDREGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M    + + ++ + E      LRP    +F GQ +   NL++F+ AAK R E+LDHV+  
Sbjct: 1   MSEFDIRNTDLKETEKEFERALRPLNFGDFQGQKKIVENLEIFVRAAKMRGESLDHVILH 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTL+ ++A ELGV  + TSGPV+ K GDLA LLTNLE+ DVLFIDEIHRLS +
Sbjct: 61  GPPGLGKTTLSAIIANELGVGIKITSGPVLDKPGDLAGLLTNLEENDVLFIDEIHRLSPV 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE LY AMED+++D+M+ +GP+ARSV+I ++ FTLI ATTR GLLT PL+ RFGI   L
Sbjct: 121 VEEYLYSAMEDYRIDIMIDKGPAARSVQIQINPFTLIGATTRSGLLTAPLRARFGINCHL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y+ + L  I+ R A +  + +T +AA EIA RSRGTPRIA  LLRRVRDFA V    +
Sbjct: 181 EYYDTDILSGIISRSAAILNVGITGQAAMEIASRSRGTPRIANALLRRVRDFAMVKGNGS 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I R+I   AL  L IDK G D++D + L  I   F GGPVG+ TI+  + E    +E++ 
Sbjct: 241 IDRDITRYALEALNIDKYGLDEMDNKILLTIIEKFKGGPVGLTTIATAVGEDAGTLEEVY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
           EP++I++GFI+RTPRGR +  +A++HLG
Sbjct: 301 EPFLIKEGFIKRTPRGREVTDLAYKHLG 328


>gi|331701281|ref|YP_004398240.1| Holliday junction ATP-dependent DNA helicase ruvB [Lactobacillus
           buchneri NRRL B-30929]
 gi|329128624|gb|AEB73177.1| Holliday junction ATP-dependent DNA helicase ruvB [Lactobacillus
           buchneri NRRL B-30929]
          Length = 342

 Score =  354 bits (909), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 164/332 (49%), Positives = 226/332 (68%), Gaps = 2/332 (0%)

Query: 5   EGLLSRN--VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           + L+S     + E++    LRPR L E+ GQ +  + L+V+I+AAK R E+LDHVL  GP
Sbjct: 7   DRLVSPENVDADENSIEKSLRPRVLSEYIGQDDVKNELRVYIKAAKQREESLDHVLLYGP 66

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA V+A E+GVN R+TSGP I K GDL +LL  L+  DVLFIDEIHRL  +VE
Sbjct: 67  PGLGKTTLAMVIANEMGVNIRTTSGPAIDKPGDLLSLLNELQPGDVLFIDEIHRLPKVVE 126

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LY AMEDF +D++VG+G  A  +   L  FTLI ATT+ G+L+ PL+DRFGI   +N+
Sbjct: 127 EMLYSAMEDFFVDIIVGQGSGAHPIHFPLPPFTLIGATTQAGMLSAPLRDRFGIVEHMNY 186

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y   DL+ IV+R A +  + + D  A EIA+RSRGTPR+A RLL+RVRDFA+V+    + 
Sbjct: 187 YNATDLEDIVRRTADIFQIDIEDSGAHEIALRSRGTPRVANRLLKRVRDFAQVSDKDQVD 246

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             I   AL +L +D +G D  DL+ LT + + + GGPVG+ T++A + E  D I ++ EP
Sbjct: 247 LSIVRYALAKLKVDDLGLDATDLKLLTTMIKYYDGGPVGLNTLAANIGEETDTIAEMYEP 306

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           Y++Q G I+RT RGR++ P  + HL   +P +
Sbjct: 307 YLLQIGLIKRTARGRIVTPKGYAHLSYPMPPQ 338


>gi|310779513|ref|YP_003967846.1| Holliday junction DNA helicase subunit RuvB [Ilyobacter polytropus
           DSM 2926]
 gi|309748836|gb|ADO83498.1| Holliday junction DNA helicase subunit RuvB [Ilyobacter polytropus
           DSM 2926]
          Length = 333

 Score =  354 bits (909), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 178/331 (53%), Positives = 241/331 (72%), Gaps = 1/331 (0%)

Query: 5   EGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           + +LS    + + DI   LRP+  +E+ GQ      + +FIEAAK R EA+DHVL  GPP
Sbjct: 2   DRVLSAGEFENEVDIQKSLRPKRFDEYIGQDNLKQKMSIFIEAAKRRGEAVDHVLLYGPP 61

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA V+A E+GVN + TSGPV+ KAGDLAA+LT+LE+ D+LFIDEIHRL+  VEE
Sbjct: 62  GLGKTTLAGVIATEMGVNLKITSGPVLDKAGDLAAILTSLEENDILFIDEIHRLNTSVEE 121

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILYPAMED +LD+++G+GPSARS++I L  FTLI ATTR GLL++PL+DRFG+  R+++Y
Sbjct: 122 ILYPAMEDRELDIIIGKGPSARSIRIELPNFTLIGATTRAGLLSSPLRDRFGVVHRMDYY 181

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           + E+L  I+ RG  + G+ V  E A EIA RSRGTPRI+ RLL+RVRD+AE+     +T+
Sbjct: 182 KSEELIKIILRGGSILGVDVRLEGAEEIAFRSRGTPRISNRLLKRVRDYAEIRGDGVVTK 241

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
            +A  A+  L ID  G D+LD   L  +  N+GGGPVGIET+S  L E R  +E++ EPY
Sbjct: 242 PLAKEAMSLLGIDSFGLDELDREILGAVIENYGGGPVGIETLSLVLGEDRKTLEEVYEPY 301

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           +++ GFI+RT RGR++ P A++HL I   ++
Sbjct: 302 LVKIGFIKRTHRGRVVTPKAYEHLNIKEKNQ 332


>gi|317485563|ref|ZP_07944440.1| Holliday junction DNA helicase RuvB [Bilophila wadsworthia 3_1_6]
 gi|316923243|gb|EFV44452.1| Holliday junction DNA helicase RuvB [Bilophila wadsworthia 3_1_6]
          Length = 342

 Score =  354 bits (909), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 171/311 (54%), Positives = 232/311 (74%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +RP  LE+F GQ E  +NL+VF+ AA+ R +A+DHVLF G PGLGKTTLAQ++A EL
Sbjct: 30  DESIRPSRLEDFIGQEELRANLRVFLNAARERGQAMDHVLFYGNPGLGKTTLAQIMAAEL 89

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138
           GVN   TSGPV+ ++GDLAA+LTNL   D+LF+DEIHR+ I VEEILYPA+ED++LDL++
Sbjct: 90  GVNLICTSGPVLERSGDLAAILTNLSRHDILFVDEIHRMPIAVEEILYPALEDYKLDLVI 149

Query: 139 GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKL 198
           G+GP+AR+VKI+L  FTL+ ATTR+GLL++PL+DRFGI  RL FY  E+L  +V R +++
Sbjct: 150 GQGPAARTVKIDLEPFTLVGATTRIGLLSSPLRDRFGIISRLEFYTPEELSRVVIRSSRI 209

Query: 199 TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKM 258
            G+ +T+  A EI  RSRGTPRIA RLLRRVRDFA V  +  +  E A  AL R+ +D+ 
Sbjct: 210 LGVPITEGGALEIGRRSRGTPRIANRLLRRVRDFAAVYGSGVVDEEQASHALRRMDVDEN 269

Query: 259 GFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRL 318
           G DQ+D + L ++   +GGGPVG++T++   SE    IED+ EPY+IQ GF++RT RGR+
Sbjct: 270 GLDQMDRKLLRVLVDIYGGGPVGVKTLAVACSEEVRTIEDIYEPYLIQCGFLKRTSRGRM 329

Query: 319 LMPIAWQHLGI 329
               A++HL +
Sbjct: 330 ATAKAYKHLNM 340


>gi|309775421|ref|ZP_07670424.1| holliday junction DNA helicase RuvB [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308916810|gb|EFP62547.1| holliday junction DNA helicase RuvB [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 337

 Score =  354 bits (909), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 173/327 (52%), Positives = 234/327 (71%), Gaps = 2/327 (0%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           E +LS      D + + LRP++L E+ GQ +   NL VFIEAAK R EALDHVL  GPPG
Sbjct: 2   ERILSNESQSMD-EEASLRPQSLREYIGQRQLKENLSVFIEAAKQRNEALDHVLLYGPPG 60

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTL+ ++A E+G N ++TSGP I K GDLAA+L+ LE  DVLFIDEIHRL   VEEI
Sbjct: 61  LGKTTLSYILANEMGGNIKTTSGPSIEKGGDLAAILSTLEPGDVLFIDEIHRLPKQVEEI 120

Query: 125 LYPAMEDFQLDLMVGEG-PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           LYPAMED+ +D++VG+   + RS+++ L  FTL+ ATTR G LT PL+DRFGI  +L FY
Sbjct: 121 LYPAMEDYCIDIVVGKDSATTRSIRLELPPFTLVGATTRAGDLTAPLRDRFGIVSQLEFY 180

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           E+++L+ I+ R +++    + +EA  EIA+RSRGTPRIA RL RRVRDFA V +   I++
Sbjct: 181 ELQELQQIISRTSRVMDTEIEEEAVLEIALRSRGTPRIANRLFRRVRDFATVMNDGIISK 240

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           +IA+ AL +L +D +G D +D +YL  I   F GGPVG+E +++ + E    +ED+ EPY
Sbjct: 241 QIAEMALDKLKVDHLGLDNVDHKYLKGIIERFRGGPVGLEALASSIGEETMTLEDVYEPY 300

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGID 330
           ++Q GFI RTPRGR++   A++HLG D
Sbjct: 301 LLQIGFINRTPRGRVVTEKAYRHLGYD 327


>gi|309807402|ref|ZP_07701365.1| Holliday junction DNA helicase RuvB [Lactobacillus iners LactinV
           01V1-a]
 gi|325913779|ref|ZP_08176140.1| Holliday junction DNA helicase RuvB [Lactobacillus iners UPII 60-B]
 gi|308169324|gb|EFO71379.1| Holliday junction DNA helicase RuvB [Lactobacillus iners LactinV
           01V1-a]
 gi|325476979|gb|EGC80130.1| Holliday junction DNA helicase RuvB [Lactobacillus iners UPII 60-B]
          Length = 334

 Score =  354 bits (909), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 168/334 (50%), Positives = 229/334 (68%), Gaps = 1/334 (0%)

Query: 2   MDREGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M ++ L S   +  E A    LRP  L ++ GQ +  S + ++I+AAK R E+LDHVL  
Sbjct: 1   MTKDNLFSSESTPMEQATELSLRPSNLSQYIGQEKVKSEMAIYIKAAKQRDESLDHVLLY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTT+A V+A ELGV  +STSGP I KAGDL ALL+ L+  DVLFIDEIHRL+  
Sbjct: 61  GPPGLGKTTMAFVIANELGVTLKSTSGPAIDKAGDLVALLSELKPGDVLFIDEIHRLAKT 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILY AMEDF +D+MVGEG +A +V + LS FTLI ATTR G L+ PL+DRFGI   +
Sbjct: 121 VEEILYSAMEDFYVDIMVGEGSAAHAVHVPLSPFTLIGATTRAGQLSAPLRDRFGIIEHM 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y  ++L+ I++R +++    +  EAA E+A RSRGTPR+A RLL+R+RDFAEV    +
Sbjct: 181 QYYSEDELQQIIERSSRVLETGINIEAAHELARRSRGTPRVANRLLKRIRDFAEVNGETS 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I+      AL +L +D  G DQ+D + L ++   + GGPVGI+T++A + E  + I ++ 
Sbjct: 241 ISLLTTKHALAKLEVDDEGLDQIDRKILKIMINCYHGGPVGIKTLAANIGEDVETISEVY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           EPY++Q+GFI RTPRGR+    A+  LGI +  R
Sbjct: 301 EPYLLQKGFISRTPRGRVANAKAYVQLGISLDTR 334


>gi|167043583|gb|ABZ08278.1| putative Holliday junction DNA helicase ruvB C-terminal domain
           [uncultured marine microorganism HF4000_APKG2K17]
          Length = 354

 Score =  354 bits (909), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 180/332 (54%), Positives = 239/332 (71%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
             + L++      +     LRP+ L+++ GQ E   NL VFI AA  R  ALDHVL  GP
Sbjct: 17  SEDRLVAPESRLGEQFDQSLRPQRLQDYIGQNEIKENLHVFIGAAIKRGHALDHVLLSGP 76

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA + ARE+ V  RSTSGPVI + GDLAA+LTNL+   +LFIDEIHRL+ +VE
Sbjct: 77  PGLGKTTLANIFAREMEVQLRSTSGPVIERQGDLAAILTNLDPGSILFIDEIHRLNRVVE 136

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LY AMEDF LD+++GEGP AR+VKI+L  FTL+ ATTR GLL++PL++RFGI  RLNF
Sbjct: 137 EVLYGAMEDFTLDIIIGEGPGARTVKIDLPHFTLVGATTRAGLLSSPLRERFGIQFRLNF 196

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y+ EDLKTI+ R A L G+ + +EA+ E+A R+RGTPRIA RLL+R RDFA++  +  IT
Sbjct: 197 YDAEDLKTIILRAASLLGIEIVEEASLELARRARGTPRIANRLLKRCRDFADMETSGVIT 256

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             + + +L R+ ID  G DQ+D   L  I + FGGGPVG+ T+SA +S+ +D IED+ EP
Sbjct: 257 LPLVERSLERMRIDLEGLDQMDRHILETIIKKFGGGPVGLSTLSAAVSDEKDTIEDVYEP 316

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           +++ +GF+QRTPRGR+    A+QHL I  P +
Sbjct: 317 FLLLKGFLQRTPRGRVATERAYQHLEISAPPQ 348


>gi|259046889|ref|ZP_05737290.1| Holliday junction DNA helicase RuvB [Granulicatella adiacens ATCC
           49175]
 gi|259036512|gb|EEW37767.1| Holliday junction DNA helicase RuvB [Granulicatella adiacens ATCC
           49175]
          Length = 335

 Score =  354 bits (909), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 170/333 (51%), Positives = 227/333 (68%), Gaps = 2/333 (0%)

Query: 2   MDREGLLSRNVSQED--ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M+ E  + +N   E    D   LRP+TL+++ GQ +    L ++I+AA++R+EALDHVL 
Sbjct: 1   MEEERFIDQNPLDEVEVQDELSLRPQTLQQYIGQQKVKEELAIYIQAARSRSEALDHVLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA V+A EL V  ++TSGP I + GDL ALL +LE  DVLFIDEIHRL  
Sbjct: 61  YGPPGLGKTTLAMVIANELEVGIKTTSGPAIERPGDLVALLNDLEAGDVLFIDEIHRLPR 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LY AMEDF +D++VG+GP+A  V   L  FTLI ATTR G L+ PL+DRFGI   
Sbjct: 121 VVEEMLYSAMEDFFVDIVVGQGPTAHPVHFPLPPFTLIGATTRAGALSAPLRDRFGIVEH 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           + +Y+   L  IV+R A +    + DEAA EIA+RSRGTPRIA RLL+RVRDF++V    
Sbjct: 181 MEYYDEASLSEIVKRSANVFDSEIKDEAALEIALRSRGTPRIANRLLKRVRDFSQVYEEG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I++EI   AL  L +D  G D +D + LT +   + GGPVG+  I+A +SE  + IED+
Sbjct: 241 MISKEITQQALKVLRVDAKGLDHIDRKLLTAMIDLYDGGPVGLGAIAANISEDAETIEDM 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
            EPY++Q GF++RT RGR++ P  + HLG   P
Sbjct: 301 YEPYLLQIGFLKRTSRGRVVTPEGYAHLGRLYP 333


>gi|330719271|ref|ZP_08313871.1| Holliday junction DNA helicase RuvB [Leuconostoc fallax KCTC 3537]
          Length = 351

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 167/317 (52%), Positives = 220/317 (69%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E  +   LRP+ L ++ GQ      L+V+I AAK R EALDHVL  GPPGLGKTTLA ++
Sbjct: 31  EQKEEVTLRPQLLNDYIGQSALKEELRVYITAAKQREEALDHVLLFGPPGLGKTTLAMII 90

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A E+ V+ ++TSGP I K GDL A+L  LE  D+LFIDEIHRL+  VEEILY AMEDF +
Sbjct: 91  ANEMAVHIKTTSGPAIEKPGDLVAVLNELEPGDILFIDEIHRLATNVEEILYSAMEDFYV 150

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D+MVG+GP+AR+V   L  FTLI ATTR G+L+ PL+DRFGI   + +Y  ++L+ IV R
Sbjct: 151 DIMVGQGPTARAVHFPLPPFTLIGATTRPGMLSKPLRDRFGIINSMQYYNADELQQIVTR 210

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A +    +  E A  IA+RSRGTPRIA RLL+RVRDFA+V   K I + I D AL +L 
Sbjct: 211 SADIFAAPIRSEGALAIALRSRGTPRIANRLLKRVRDFAQVQGKKAIDKMIVDVALKKLR 270

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D  G D+ D ++L  +   + GGPVG+ TISA + E  + +E ++EPY++Q GF+QRTP
Sbjct: 271 VDDKGLDETDHKFLQTMIDFYNGGPVGLNTISANIGEESETLETMVEPYLLQIGFLQRTP 330

Query: 315 RGRLLMPIAWQHLGIDI 331
           RGR++   A+QHLGI  
Sbjct: 331 RGRVVTEQAYQHLGIPY 347


>gi|322390585|ref|ZP_08064100.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           parasanguinis ATCC 903]
 gi|321142664|gb|EFX38127.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           parasanguinis ATCC 903]
          Length = 345

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 174/320 (54%), Positives = 227/320 (70%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +  E+A    LRP+ L E+ GQ +    LK+FIEAAK R EALDHVL  GPPGLGKTT+A
Sbjct: 23  MGDEEAVERTLRPQYLHEYIGQDKVKDQLKIFIEAAKLRDEALDHVLLFGPPGLGKTTMA 82

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            V+A ELGVN + TSGPVI KAGDL A+L +LE  DVLFIDEIHRL + VEE+LY AMED
Sbjct: 83  FVIANELGVNLKQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMED 142

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F +D+M+G G S+RSV ++L  FTLI ATTR G+L+NPL+ RFGI   + +YE +DL  I
Sbjct: 143 FYIDIMIGAGESSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYEQDDLTEI 202

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           V+R A++  + +T EAA E+++RSRGTPRIA RLL+RVRDFA++     I   I D AL 
Sbjct: 203 VERTAEIFEMEITHEAAEELSLRSRGTPRIANRLLKRVRDFAQIMGDGLIDDTITDKALS 262

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L +D  G D +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GFI 
Sbjct: 263 MLDVDHEGLDYVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIM 322

Query: 312 RTPRGRLLMPIAWQHLGIDI 331
           RT  GR+    A++HLG   
Sbjct: 323 RTRTGRVATRKAYEHLGYPY 342


>gi|328955748|ref|YP_004373081.1| Holliday junction DNA helicase subunit RuvB [Coriobacterium
           glomerans PW2]
 gi|328456072|gb|AEB07266.1| Holliday junction DNA helicase subunit RuvB [Coriobacterium
           glomerans PW2]
          Length = 367

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 169/325 (52%), Positives = 236/325 (72%), Gaps = 1/325 (0%)

Query: 5   EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E LL+ ++S +D ++   LRP+ LE++ GQ     +L++ IEAA+ R E LDHV+F GPP
Sbjct: 30  ERLLTADLSPDDLEVERTLRPQRLEDYCGQSHIKRSLRILIEAARHRGECLDHVMFSGPP 89

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA V+A ELG   ++TSGP I + GDLAA+LTNL+  DVLFIDEIHRL+  VEE
Sbjct: 90  GLGKTTLATVLANELGAQIKTTSGPAIERTGDLAAILTNLQPGDVLFIDEIHRLNRSVEE 149

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LYPAMEDF LD+++G+GP+ARS+++ + RFTL+ ATTR G+LT PL+DRFGI  RL++Y
Sbjct: 150 VLYPAMEDFALDIVIGKGPAARSIRLEIPRFTLVGATTRSGMLTGPLRDRFGISFRLDYY 209

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            I+DL  IV+R A++ G+ +  ++A EIA RSRGTPR+A RLL+RVRD+A+V    +I  
Sbjct: 210 AIDDLAAIVERSARILGVDIDADSAHEIASRSRGTPRLANRLLKRVRDYAQVRGGGSIDL 269

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
            I+  +L    ID++G D +DLR L  +AR F G  VG+ T+++ + E    + D+ EPY
Sbjct: 270 SISQESLTFFEIDELGLDWMDLRILETLARTFRGRAVGLSTLASAVGEDPATLADVYEPY 329

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLG 328
           ++Q G + RTP+GR   P A+ HLG
Sbjct: 330 LLQCGLMVRTPQGRQATPAAFDHLG 354


>gi|258648908|ref|ZP_05736377.1| holliday junction DNA helicase RuvB [Prevotella tannerae ATCC
           51259]
 gi|260850940|gb|EEX70809.1| holliday junction DNA helicase RuvB [Prevotella tannerae ATCC
           51259]
          Length = 346

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 173/321 (53%), Positives = 226/321 (70%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
            QE    + LRP   ++F+GQ +   NL+VF+EAAK R E LDH L  GPPGLGKTTLA 
Sbjct: 17  PQERDFENALRPLRFDDFSGQQKVVDNLRVFVEAAKYRGEPLDHTLLHGPPGLGKTTLAN 76

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++A ELGV F+ TSGPV+ K GDLA LLT+LE  DVLFIDEIHRL  +VEE LY AMED+
Sbjct: 77  IIANELGVGFKLTSGPVLDKPGDLAGLLTSLEPHDVLFIDEIHRLQPVVEEYLYSAMEDY 136

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           ++D+M+  GP+ARS++++L+ FTLI ATTR GLLT PL+ RFGI + L +Y+   + +I+
Sbjct: 137 RIDIMIDRGPAARSIQLDLNPFTLIGATTRSGLLTAPLRARFGINLHLEYYDALTIGSIL 196

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R A + G+ + DEA  EIA RSRGTPRIA  LLRRVRDFA+V    TI  EIA+ AL  
Sbjct: 197 TRSAGILGVPLKDEARKEIAGRSRGTPRIANALLRRVRDFAQVKGTGTIDPEIANFALEA 256

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L ID+ G D  D + L  I   F GGPVGI TI+  + E    +E++ EP++I++GFI+R
Sbjct: 257 LNIDRYGLDDTDNKILLTIIDKFKGGPVGIGTIATAIGEDPGTLEEVYEPFLIKEGFIRR 316

Query: 313 TPRGRLLMPIAWQHLGIDIPH 333
           TPRGR +  +A++HL   +P 
Sbjct: 317 TPRGREVTELAFKHLNRPLPR 337


>gi|223044105|ref|ZP_03614144.1| holliday junction DNA helicase RuvB [Staphylococcus capitis SK14]
 gi|222442499|gb|EEE48605.1| holliday junction DNA helicase RuvB [Staphylococcus capitis SK14]
          Length = 334

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 170/328 (51%), Positives = 230/328 (70%), Gaps = 2/328 (0%)

Query: 2   MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD+  ++ +    ED+D  L LRP  L+++ GQ    SNL+VFI+AAK R E LDHVL  
Sbjct: 1   MDK-RMVDQQFHNEDSDFELSLRPTKLKQYIGQTSIKSNLEVFIKAAKLREEPLDHVLLF 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTL+ ++A E+ VN R+ SGP + + GDLAA+L+ L+  DVLFIDEIHRLS +
Sbjct: 60  GPPGLGKTTLSNIIANEMEVNIRTISGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSV 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDF LD+++G+G  ARS++I+L  FTL+ ATTR G LT PL+DRFG+ +RL
Sbjct: 120 VEEVLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATTRAGSLTGPLRDRFGVHLRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y   DLK I+ R A + G  + +E+A E+A RSRGTPR+A RLL+RVRDF +V     
Sbjct: 180 EYYNENDLKEIITRTADVLGTGIDEESALELARRSRGTPRVANRLLKRVRDFQQVNEDDQ 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I  E    AL  L +DK G D +D + +  I   + GGPVG++TI+  + E R  IED+ 
Sbjct: 240 IYIETTKRALQLLQVDKEGLDYIDHKMMNCIINQYNGGPVGLDTIAVSIGEERITIEDVY 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
           EP++IQ+GF++RTPRGR   P A++H  
Sbjct: 300 EPFLIQKGFLERTPRGRKATPFAYEHFN 327


>gi|309803616|ref|ZP_07697708.1| Holliday junction DNA helicase RuvB [Lactobacillus iners LactinV
           11V1-d]
 gi|315653061|ref|ZP_07905989.1| crossover junction ATP-dependent DNA helicase RuvB [Lactobacillus
           iners ATCC 55195]
 gi|308164364|gb|EFO66619.1| Holliday junction DNA helicase RuvB [Lactobacillus iners LactinV
           11V1-d]
 gi|315489596|gb|EFU79230.1| crossover junction ATP-dependent DNA helicase RuvB [Lactobacillus
           iners ATCC 55195]
          Length = 334

 Score =  354 bits (908), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 168/334 (50%), Positives = 229/334 (68%), Gaps = 1/334 (0%)

Query: 2   MDREGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M ++ L S   +  E A    LRP  L ++ GQ +  S + ++I+AAK R E+LDHVL  
Sbjct: 1   MTKDNLFSGESTPMEQATELSLRPSNLSQYIGQEKVKSEMAIYIKAAKQRDESLDHVLLY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTT+A V+A ELGV  +STSGP I KAGDL ALL+ L+  DVLFIDEIHRL+  
Sbjct: 61  GPPGLGKTTMAFVIANELGVTLKSTSGPAIDKAGDLVALLSELKPGDVLFIDEIHRLAKT 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILY AMEDF +D+MVGEG +A +V + LS FTLI ATTR G L+ PL+DRFGI   +
Sbjct: 121 VEEILYSAMEDFYVDIMVGEGSAAHAVHVPLSPFTLIGATTRAGQLSAPLRDRFGIVEHM 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y  ++L+ I++R +++    +  EAA E+A RSRGTPR+A RLL+R+RDFAEV    +
Sbjct: 181 QYYSEDELQQIIERSSRVLETGINIEAAHELARRSRGTPRVANRLLKRIRDFAEVNGETS 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I+      AL +L +D  G DQ+D + L ++   + GGPVGI+T++A + E  + I ++ 
Sbjct: 241 ISLLTTKHALAKLEVDDEGLDQIDRKILKIMINCYHGGPVGIKTLAANIGEDVETISEVY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           EPY++Q+GFI RTPRGR+    A+  LGI +  R
Sbjct: 301 EPYLLQKGFISRTPRGRVANAKAYVQLGISLDTR 334


>gi|282889611|ref|ZP_06298152.1| hypothetical protein pah_c002o062 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500534|gb|EFB42812.1| hypothetical protein pah_c002o062 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 337

 Score =  354 bits (908), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 163/328 (49%), Positives = 230/328 (70%), Gaps = 1/328 (0%)

Query: 2   MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M  +  +  +  QED    + LRP+ L++F GQ      L+V I AAK R EAL H LF 
Sbjct: 1   MTTKNYIESSFCQEDTTFEVPLRPQALDDFAGQDSIRERLEVLIGAAKQRGEALGHCLFS 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A+ +G N   TSGP+I KAGDLA +LTNL++ D+LFIDE+HRL   
Sbjct: 61  GPPGLGKTTLANILAKAMGTNIVVTSGPLIEKAGDLAGVLTNLKEGDILFIDELHRLQPA 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EE LYP MEDF LDLM+ +GP+ARS++I L RFTL+ ATTRVGLLT+P++ RF    RL
Sbjct: 121 IEEYLYPPMEDFVLDLMIDKGPNARSIQIKLPRFTLVGATTRVGLLTSPMRSRFAFSCRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           ++YE + L+ I+ R A++  + +  +   EIA R+RGTPRIA  LLR VRD+A++     
Sbjct: 181 DYYEPKVLEQILGRTAQILHMTIDQKGLAEIAQRARGTPRIANHLLRWVRDYAQMRANNI 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           IT+ I   AL  LAID++GFD++D + L ++  ++ GGPVG+ T++  + E ++ IE++ 
Sbjct: 241 ITQPIVIKALEMLAIDQIGFDEMDKKILEVLIDDYNGGPVGLNTLAVAIGEEKNTIEEVH 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
           EPY+I +GFI+RTP+GR+    A++HLG
Sbjct: 301 EPYLIMKGFIKRTPKGRVATESAYKHLG 328


>gi|254557083|ref|YP_003063500.1| Holliday junction DNA helicase B [Lactobacillus plantarum JDM1]
 gi|300768016|ref|ZP_07077922.1| crossover junction ATP-dependent DNA helicase RuvB [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|308181077|ref|YP_003925205.1| Holliday junction DNA helicase B [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|254046010|gb|ACT62803.1| Holliday junction DNA helicase B [Lactobacillus plantarum JDM1]
 gi|300494365|gb|EFK29527.1| crossover junction ATP-dependent DNA helicase RuvB [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|308046568|gb|ADN99111.1| Holliday junction DNA helicase B [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 336

 Score =  354 bits (908), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 169/334 (50%), Positives = 223/334 (66%), Gaps = 2/334 (0%)

Query: 2   MDREGLLSRNVSQED--ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           MD + LLS + + ++  +    LRP+TL ++ GQ      L V+IEAA+ R E+LDHVL 
Sbjct: 1   MDDDKLLSGDKADDEEASLEKSLRPQTLAQYIGQARVKHELGVYIEAARKREESLDHVLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA V+A E+ VN R+TSGP I K GDL ALL  LE  D+LFIDEIHRL  
Sbjct: 61  YGPPGLGKTTLAMVIANEMQVNIRTTSGPAIEKPGDLVALLNELEPGDILFIDEIHRLPK 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           IVEE+LY AMEDF +D++VG+GP+A  V   L  FTLI ATTR G+L+ PL+DRFGI   
Sbjct: 121 IVEEMLYSAMEDFFVDIVVGQGPTAHPVHFPLPPFTLIGATTRAGMLSAPLRDRFGIVEH 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           + +YE+ DL+ IV+R A +   ++    A EIA RSRGTPRIA RL +R+RDFAEVA   
Sbjct: 181 MAYYEVADLEDIVKRTADIFQTSIKPSGAHEIARRSRGTPRIANRLFKRIRDFAEVADQD 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I   I   +L  L +D  G D+ D + L  +   + GGPVG+ TI+A + E  D I ++
Sbjct: 241 AIDEAIVARSLTYLRVDDAGLDETDNKLLRTMLEYYDGGPVGLATIAANIGEETDTIAEV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +EPY++Q GF++RT RGR++    +QHLG   P 
Sbjct: 301 VEPYLLQIGFLKRTQRGRVVTIKGYQHLGFPYPE 334


>gi|311745415|ref|ZP_07719200.1| holliday junction DNA helicase RuvB [Algoriphagus sp. PR1]
 gi|126577964|gb|EAZ82184.1| holliday junction DNA helicase RuvB [Algoriphagus sp. PR1]
          Length = 344

 Score =  354 bits (908), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 177/329 (53%), Positives = 228/329 (69%), Gaps = 4/329 (1%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           D E L S++   E A    LRP + E+FTGQ +   NL+VF+ AAK R+E LDHVL  GP
Sbjct: 9   DDEHLSSKDKEYEKA----LRPLSFEDFTGQFKIIENLRVFVLAAKKRSEPLDHVLLHGP 64

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTL+ ++A EL    + TSGPV+ K  DLA LLTNLE+ DVLFIDEIHRL+ IVE
Sbjct: 65  PGLGKTTLSHIIANELQSGIKITSGPVLDKPSDLAGLLTNLEEGDVLFIDEIHRLNPIVE 124

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E LY AMEDF++D+M+  GP+ARSV+I+LS FTLI ATTR GLLT+PL+ RFGI  RL +
Sbjct: 125 EYLYSAMEDFRIDIMLDSGPNARSVQISLSPFTLIGATTRSGLLTSPLRARFGINSRLEY 184

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y+ + L  IV R A +    + + AA EIA RSRGTPRI+  LLRR RDFAEV    T+T
Sbjct: 185 YDAKLLTDIVCRSAGILQTPIEEVAAYEIARRSRGTPRISNMLLRRTRDFAEVKGDGTVT 244

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             IA  AL  L +D+ G D++D R L  I   F GGPVG+ TI+    E  + IE++ EP
Sbjct: 245 LAIAKMALDALDVDEHGLDEMDNRILLTIIDKFKGGPVGLSTIATACGEEAETIEEVYEP 304

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           ++IQ+G+++RT RGR+   +A++HL I  
Sbjct: 305 FLIQEGYLKRTARGRMATEMAYKHLNIKP 333


>gi|28378878|ref|NP_785770.1| Holliday junction DNA helicase B [Lactobacillus plantarum WCFS1]
 gi|38258512|sp|Q88V03|RUVB_LACPL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|28271715|emb|CAD64621.1| holliday junction DNA helicase RuvB [Lactobacillus plantarum WCFS1]
          Length = 336

 Score =  354 bits (908), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 169/334 (50%), Positives = 223/334 (66%), Gaps = 2/334 (0%)

Query: 2   MDREGLLSRNVSQED--ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           MD + LLS + + ++  +    LRP+TL ++ GQ      L V+IEAA+ R E+LDHVL 
Sbjct: 1   MDDDKLLSGDKADDEEASLEKSLRPQTLAQYIGQARVKHELGVYIEAARKREESLDHVLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA V+A E+ VN R+TSGP I K GDL ALL  LE  D+LFIDEIHRL  
Sbjct: 61  YGPPGLGKTTLAMVIANEMQVNIRTTSGPAIEKPGDLVALLNELEPGDILFIDEIHRLPK 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           IVEE+LY AMEDF +D++VG+GP+A  V   L  FTLI ATTR G+L+ PL+DRFGI   
Sbjct: 121 IVEEMLYSAMEDFFVDIVVGQGPTAHPVHFPLPPFTLIGATTRAGMLSAPLRDRFGIVEH 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           + +YE+ DL+ IV+R A +   ++    A EIA RSRGTPRIA RL +R+RDFAEVA   
Sbjct: 181 MAYYEVADLEDIVKRTADIFQTSIKPSGAHEIARRSRGTPRIANRLFKRIRDFAEVADQD 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I   I   +L  L +D  G D+ D + L  +   + GGPVG+ TI+A + E  D I ++
Sbjct: 241 AIDEPIVARSLTYLRVDDAGLDETDNKLLRTMLEYYDGGPVGLATIAANIGEETDTIAEV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +EPY++Q GF++RT RGR++    +QHLG   P 
Sbjct: 301 VEPYLLQIGFLKRTQRGRVVTIKGYQHLGFPYPE 334


>gi|114570972|ref|YP_757652.1| Holliday junction DNA helicase RuvB [Maricaulis maris MCS10]
 gi|122315335|sp|Q0ALX9|RUVB_MARMM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|114341434|gb|ABI66714.1| Holliday junction DNA helicase RuvB [Maricaulis maris MCS10]
          Length = 352

 Score =  354 bits (908), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 208/331 (62%), Positives = 254/331 (76%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           + E L+ R++   D     LRP +  +F GQ  A +NLKVF++AA+ R EALDHVL  GP
Sbjct: 9   EAERLVDRDMQPGDGRDRALRPLSFSDFVGQKAAIANLKVFVDAARRREEALDHVLLSGP 68

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLAQ+VARE+GV FR+TSGPVIAKAGDLAA+LTNLE RDVLFIDEIHRL+  VE
Sbjct: 69  PGLGKTTLAQIVAREMGVGFRATSGPVIAKAGDLAAILTNLEPRDVLFIDEIHRLAPAVE 128

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILYPAMEDF LDL++GEGPSAR+V+I L  FTL+ ATTR GLL  PL+DRFG+P+RL F
Sbjct: 129 EILYPAMEDFCLDLVIGEGPSARTVRIELPPFTLVGATTRAGLLATPLRDRFGVPVRLEF 188

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y+  +L  IV R A   G+  T + A EIA R+RGTPR+AGRLLRRVRDFAE   A  I+
Sbjct: 189 YDEAELGFIVTRAADKLGIGATPDGAREIARRARGTPRVAGRLLRRVRDFAEAEDADHIS 248

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             +AD AL RL +D +G D LD RYL  +  +FGGGPVG+ET++A L+E RDA+ED++EP
Sbjct: 249 EAVADRALKRLEVDAIGLDSLDRRYLRALTESFGGGPVGVETLAAALAEARDALEDVVEP 308

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           ++IQQGFIQRTPRGRL    AW+HLG+  P 
Sbjct: 309 FLIQQGFIQRTPRGRLATGRAWEHLGLVPPQ 339


>gi|300087843|ref|YP_003758365.1| Holliday junction DNA helicase RuvB [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527576|gb|ADJ26044.1| Holliday junction DNA helicase RuvB [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 346

 Score =  354 bits (908), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 167/330 (50%), Positives = 235/330 (71%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M+   + S++V++E+   + LRP++L++F GQ     NL + +EAA+ R EALDHVL  G
Sbjct: 6   MNERIISSQSVNEEEGAENSLRPKSLDDFIGQERLRDNLGITMEAARGRGEALDHVLLYG 65

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++AR++GVN R T+GP + + GDLAA+LT+L+  DVLFIDEIHRL   V
Sbjct: 66  PPGLGKTTLAHIIARDMGVNIRITAGPAVERPGDLAAILTSLQSNDVLFIDEIHRLGRTV 125

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILYPAMEDF LD+++G+GP A++++I L  FTLI ATTR  +L++PL+DRFG   RL 
Sbjct: 126 EEILYPAMEDFALDIVIGKGPGAKNLRIKLPHFTLIGATTRYAMLSSPLRDRFGSVYRLE 185

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y   ++++I++R A++  +   D    EIA R+RGTPR+A RLL+RVRD+A+V    +I
Sbjct: 186 YYNDSEIESIIRRSARILDVKADDAGLREIACRARGTPRVANRLLKRVRDYAQVKENGSI 245

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
             +IA AAL RL +D +G D +D   L  I   F GGPVG+ET++A +SE  D I D+ E
Sbjct: 246 DADIAGAALGRLEVDGVGLDSIDHHLLRTIIEKFSGGPVGLETLAAAISEDSDTIMDIYE 305

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           PY++Q GF++RT RGR+    A+ HL I  
Sbjct: 306 PYLMQLGFLERTARGRVATRAAYDHLQIPY 335


>gi|116494313|ref|YP_806047.1| Holliday junction DNA helicase RuvB [Lactobacillus casei ATCC 334]
 gi|191637649|ref|YP_001986815.1| Holliday junction DNA helicase RuvB [Lactobacillus casei BL23]
 gi|227534465|ref|ZP_03964514.1| Holliday junction DNA helicase B [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|122264258|sp|Q03B17|RUVB_LACC3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|238693019|sp|B3WC56|RUVB_LACCB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|116104463|gb|ABJ69605.1| Holliday junction DNA helicase subunit RuvB [Lactobacillus casei
           ATCC 334]
 gi|190711951|emb|CAQ65957.1| Holliday junction ATP-dependent DNA helicase ruvB [Lactobacillus
           casei BL23]
 gi|227187864|gb|EEI67931.1| Holliday junction DNA helicase B [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|327381704|gb|AEA53180.1| Holliday junction DNA helicase RuvA [Lactobacillus casei LC2W]
 gi|327384870|gb|AEA56344.1| Holliday junction DNA helicase RuvA [Lactobacillus casei BD-II]
          Length = 338

 Score =  354 bits (908), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 173/330 (52%), Positives = 229/330 (69%), Gaps = 2/330 (0%)

Query: 3   DREGLLSRNV--SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           D++ L+S +V  S E      LRPR L ++ GQ      L+V+I AAK R E+LDHVL  
Sbjct: 5   DKDRLVSGDVDDSNEAQIEKSLRPRMLAQYIGQDRVKHQLEVYITAAKQREESLDHVLLY 64

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA V+A ELGVN R+TSGP I K GDL ALL  L   DVLFIDEIHRL  I
Sbjct: 65  GPPGLGKTTLALVIANELGVNIRTTSGPAIEKPGDLVALLNELHPGDVLFIDEIHRLPKI 124

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LY AMEDF +D++VG+GP+A  V   L  FTLI ATTR G+L+ PL+DRFGI   +
Sbjct: 125 VEEMLYSAMEDFYIDIVVGQGPTAHPVHFPLPPFTLIGATTRAGMLSAPLRDRFGISEHM 184

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y  +DL  IV+R A +  +A+  E A EIA RSRGTPR+A RLL+R+RDFAEVA    
Sbjct: 185 AYYSADDLSEIVKRSATIFDMAIDAEGAHEIARRSRGTPRVANRLLKRIRDFAEVAGQSP 244

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +  ++ D AL +L +D+ G DQ+D + L  + R++ GGPVG+ TI+A + E    IE++ 
Sbjct: 245 VDIQMVDHALDQLQVDQQGLDQIDRKLLMFMIRDYEGGPVGLSTIAANIGEEMATIEEMY 304

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           EPY++Q G+++RTPRGR++ P  + H+G+ 
Sbjct: 305 EPYLLQIGYLKRTPRGRMVTPAGFAHMGMS 334


>gi|293400499|ref|ZP_06644644.1| holliday junction DNA helicase RuvB [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305525|gb|EFE46769.1| holliday junction DNA helicase RuvB [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 335

 Score =  354 bits (908), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 170/328 (51%), Positives = 234/328 (71%), Gaps = 2/328 (0%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           E +LS N  Q   +   LRP TL+E+ GQ +   NL VFI+AAK R EALDHVL  GPPG
Sbjct: 2   ERVLS-NEMQGVEEEDTLRPSTLKEYIGQAQLKENLAVFIQAAKQRNEALDHVLLYGPPG 60

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTL+ ++A E+G + ++TSGP I K+GDLAA+L+ LE  DVLFIDEIHRL   VEE+
Sbjct: 61  LGKTTLSYILANEMGGHIKTTSGPSIEKSGDLAAILSTLEAGDVLFIDEIHRLPKQVEEV 120

Query: 125 LYPAMEDFQLDLMVGEGP-SARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           LYPAMED+ +D++VG+   + RS++++L  FTL+ ATTR G LT PL+DRFGI  +L FY
Sbjct: 121 LYPAMEDYCIDIVVGKDSSTTRSIRLDLPPFTLVGATTRAGDLTAPLRDRFGIVSQLEFY 180

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            +++L+ I+ R +++    + +EA  EIA+RSRGTPRIA RL RRVRDFA+V +   I +
Sbjct: 181 SLDELQQIIWRTSRVMDTEIEEEAVLEIALRSRGTPRIANRLFRRVRDFAQVMNDGIIDK 240

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
            +A  AL +L +D +G D +D +YL  I   F GGPVG+E +++ + E    +ED+ EPY
Sbjct: 241 AVAAMALDKLKVDHLGLDNVDHKYLKGIIERFKGGPVGLEALASSIGEEAMTLEDVYEPY 300

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           ++Q GFI RTPRGR++   A++HLG D+
Sbjct: 301 LLQIGFINRTPRGRIVTDKAYRHLGYDM 328


>gi|227484943|ref|ZP_03915259.1| crossover junction endoribonuclease subunit B [Anaerococcus
           lactolyticus ATCC 51172]
 gi|227237098|gb|EEI87113.1| crossover junction endoribonuclease subunit B [Anaerococcus
           lactolyticus ATCC 51172]
          Length = 335

 Score =  353 bits (907), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 170/333 (51%), Positives = 227/333 (68%), Gaps = 2/333 (0%)

Query: 1   MMDRE-GLLSRNVSQEDA-DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M D    ++  N   ED    + +RP+ L ++ GQ +    L +FI+++ +R E LDHVL
Sbjct: 1   MFDENTRIVGSNEQIEDLRQENSIRPKWLRDYIGQDKVKEKLDIFIKSSLSREEPLDHVL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTL+ ++A ELGVN R TSGP I K  DLA++LTNL + DVLFIDEIHR++
Sbjct: 61  LQGPPGLGKTTLSTIIANELGVNLRVTSGPAIEKPSDLASILTNLAEGDVLFIDEIHRIN 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
             VEEILY AMEDF LD++VG+GP+A+S++I+L +FTLI ATTR G+L+ PL+DRFG+ +
Sbjct: 121 RSVEEILYSAMEDFVLDIIVGKGPNAQSIRIDLEKFTLIGATTRAGMLSAPLRDRFGVLL 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
            LN Y   DL TIV+R A +  + + D+ A EIA RSRGTPRIA RLL+RVRD+A V   
Sbjct: 181 SLNLYNSNDLTTIVKRSANILDIPIDDKGAIEIAKRSRGTPRIANRLLKRVRDYAIVKAD 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             I  E +   L  L ID MG D +D + +  +  NF GGPVG++TI+A        IED
Sbjct: 241 DKIDYETSRKGLELLEIDPMGLDTMDKKIILTMYENFAGGPVGVDTIAASTGIENVTIED 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           + EPY++Q GFI RTPRGR+L   A++H G+  
Sbjct: 301 VYEPYLLQIGFISRTPRGRVLTRKAYEHYGLKY 333


>gi|313897405|ref|ZP_07830948.1| Holliday junction DNA helicase RuvB [Clostridium sp. HGF2]
 gi|312957775|gb|EFR39400.1| Holliday junction DNA helicase RuvB [Clostridium sp. HGF2]
          Length = 337

 Score =  353 bits (907), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 173/327 (52%), Positives = 233/327 (71%), Gaps = 2/327 (0%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           E +LS      D + + LRP++L E+ GQ +   NL VFIEAAK R EALDHVL  GPPG
Sbjct: 2   ERILSNESQSMD-EEASLRPQSLREYIGQRQLKENLSVFIEAAKQRNEALDHVLLYGPPG 60

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTL+ ++A E+G + ++TSGP I K GDLAA+L+ LE  DVLFIDEIHRL   VEEI
Sbjct: 61  LGKTTLSYILANEMGGSIKTTSGPSIEKGGDLAAILSTLEPGDVLFIDEIHRLPKQVEEI 120

Query: 125 LYPAMEDFQLDLMVGEG-PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           LYPAMED+ +D++VG+   + RS+++ L  FTL+ ATTR G LT PL+DRFGI  +L FY
Sbjct: 121 LYPAMEDYCIDIVVGKDSATTRSIRLELPPFTLVGATTRAGDLTAPLRDRFGIVSQLEFY 180

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           E+ +L+ I+ R +++    + +EA  EIA+RSRGTPRIA RL RRVRDFA V +   I++
Sbjct: 181 ELAELQQIISRTSRVMDTEIEEEAVLEIALRSRGTPRIANRLFRRVRDFATVMNDGIISK 240

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           +IA+ AL +L +D +G D +D +YL  I   F GGPVG+E +S+ + E    +ED+ EPY
Sbjct: 241 QIAEMALDKLKVDHLGLDNVDHKYLKGIIERFKGGPVGLEALSSSIGEETMTLEDVYEPY 300

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGID 330
           ++Q GFI RTPRGR++   A++HLG D
Sbjct: 301 LLQIGFINRTPRGRVVTEKAYRHLGYD 327


>gi|321472926|gb|EFX83895.1| hypothetical protein DAPPUDRAFT_315314 [Daphnia pulex]
          Length = 339

 Score =  353 bits (907), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 195/331 (58%), Positives = 248/331 (74%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M    LL+ N  + D     LRP +LE F GQ     NL+VFI++AK R EALDHVLF G
Sbjct: 1   MTEARLLTPNPQEGDFSDKSLRPLSLETFVGQEPLRRNLRVFIDSAKVRGEALDHVLFFG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
            PGLGKTTLAQ+VA+ELGVNFR TSGP I++AGDLAALLTNL+ RDVLFIDEIHRL+  V
Sbjct: 61  SPGLGKTTLAQIVAQELGVNFRITSGPTISRAGDLAALLTNLQPRDVLFIDEIHRLNTAV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILYPA+EDF+LDLM+GEGP+ARS++I+L  FTLI ATTR GLL+ PL+DRFG+ + L 
Sbjct: 121 EEILYPALEDFKLDLMIGEGPAARSLRIDLQPFTLIGATTRSGLLSAPLRDRFGVLLNLV 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY   +L+ I+ + A    L++  EAA E+A RSRGTPR+A RLLRRVR+FA V  +  +
Sbjct: 181 FYTPLELQRILLQAATKLDLSLPSEAAFELARRSRGTPRVALRLLRRVRNFAVVQQSSCV 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
              +   AL  L +D++G D LD RYL+ IA  F GGPVGIET++A L+E R+ +E+++E
Sbjct: 241 EVALVRQALDHLDVDEVGLDALDRRYLSHIALYFLGGPVGIETLAAALAEERETLEEIVE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           P++IQQGF+QRT RGR+L P A+ HLG+  P
Sbjct: 301 PFLIQQGFLQRTSRGRVLSPKAYTHLGLPSP 331


>gi|251781504|ref|YP_002995805.1| Holliday junction DNA helicase RuvB [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
 gi|242390132|dbj|BAH80591.1| Holliday junction DNA helicase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 338

 Score =  353 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 170/330 (51%), Positives = 227/330 (68%), Gaps = 1/330 (0%)

Query: 6   GLLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
            +L  +V   E+     LRP+ L E+ GQ +    L +FIEAAK R E+LDHVL  GPPG
Sbjct: 9   RILDNDVMGDEELVERTLRPQYLREYIGQDKVKEQLTIFIEAAKLRDESLDHVLLFGPPG 68

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTT+A V+A ELGVN + TSGP I KAGDL A+L +LE  DVLFIDEIHRL + VEE+
Sbjct: 69  LGKTTMAFVIANELGVNLKQTSGPAIEKAGDLVAILNDLEPGDVLFIDEIHRLPMAVEEV 128

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LY AMEDF +D+M+G G ++RSV ++L  FTLI ATTR G+L+NPL+ RFGI   + +Y+
Sbjct: 129 LYSAMEDFYIDIMIGAGDTSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYQ 188

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
             DL  IV+R A +  + +  EAA E+A RSRGTPRIA RLL+RVRD+A++     IT +
Sbjct: 189 EADLTEIVERTADIFDMEIVHEAAQELACRSRGTPRIANRLLKRVRDYAQIVGDGVITAQ 248

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           I D AL  L +D+ G D +D + L  +   + GGPVG+ T+S  ++E RD +ED+ EPY+
Sbjct: 249 ITDKALTMLDVDREGLDYVDQKILRTMIEMYQGGPVGLGTLSVNIAEERDTVEDMYEPYL 308

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           IQ+GF+ RT  GR+    A++HLG   P +
Sbjct: 309 IQKGFLMRTRTGRVATEKAYRHLGYPCPSK 338


>gi|323341473|ref|ZP_08081714.1| crossover junction ATP-dependent DNA helicase RuvB [Lactobacillus
           ruminis ATCC 25644]
 gi|323091084|gb|EFZ33715.1| crossover junction ATP-dependent DNA helicase RuvB [Lactobacillus
           ruminis ATCC 25644]
          Length = 335

 Score =  353 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 167/334 (50%), Positives = 228/334 (68%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLS-RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M + + ++S  N+   +     LRP+TL+ + GQ +    L V+I AAK R E+LDHVL 
Sbjct: 1   MTEDKRIVSGENLDASEQADLTLRPKTLKTYIGQEKIKRELSVYIAAAKQREESLDHVLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A E+ V  ++T+GP I K GDL ALL  LE  DVLFIDEIHRL  
Sbjct: 61  YGPPGLGKTTLACIIANEMQVGIKTTTGPAIEKPGDLVALLNELEPGDVLFIDEIHRLPK 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEEILY AMEDF +D++VG+  +A  V+  L  FTL+ ATTR G+L+ PL+ RFGI   
Sbjct: 121 NVEEILYSAMEDFYIDIIVGQDSAAHPVRFPLPPFTLVGATTRAGMLSAPLRARFGIVGH 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           +N+YE ++L  IVQR A +    ++ + A EIA RSRGTPR+A RLL+RVRDFAEVAH  
Sbjct: 181 MNYYEDDELTRIVQRSAAVFAAQISADGAFEIARRSRGTPRVANRLLKRVRDFAEVAHKD 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  +I   AL  L +D+ G D  D R L  +   +GGGPVG+ T++A + E  + + D+
Sbjct: 241 EIDTQIVCYALDLLRVDQCGLDDTDRRLLRTMIELYGGGPVGLATLAANIGEETETVADM 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           IEPY++Q+GFI+RTPRGR++ P+A++HL + I +
Sbjct: 301 IEPYLMQRGFIKRTPRGRMVTPLAYKHLNLKIDN 334


>gi|160902803|ref|YP_001568384.1| Holliday junction DNA helicase B [Petrotoga mobilis SJ95]
 gi|160360447|gb|ABX32061.1| Holliday junction DNA helicase RuvB [Petrotoga mobilis SJ95]
          Length = 351

 Score =  353 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 173/336 (51%), Positives = 230/336 (68%), Gaps = 5/336 (1%)

Query: 1   MMDRE-----GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALD 55
           M+++E      LL  +   ED     LRP  L EF GQ      LKV IEAAK R EA+D
Sbjct: 1   MIEKENTNPKRLLDPSFIGEDTGSKKLRPNYLNEFIGQDNIKKKLKVAIEAAKIRKEAMD 60

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIH 115
           HV+  GPPGLGKTTLA V++ ELG N + TSGPVI KAGDLAA+LTNLE+ DVLFIDEIH
Sbjct: 61  HVVLAGPPGLGKTTLAYVISNELGANLQITSGPVIEKAGDLAAILTNLENGDVLFIDEIH 120

Query: 116 RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
           RL+  VEEILY AMEDFQLD+++G+GPSARS++I+L  FTL+ ATTR+GL+  PL+ RFG
Sbjct: 121 RLNRTVEEILYSAMEDFQLDIVIGKGPSARSIRIDLQPFTLVGATTRLGLIAPPLRSRFG 180

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
           I + ++FY  +DL  I++R A +  + + ++A+  +A RSRGTPRIA RLLRRVRDF +V
Sbjct: 181 IILEVDFYSPKDLNLIIKRSADILNIKIKEDASLILAQRSRGTPRIANRLLRRVRDFVQV 240

Query: 236 AHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDA 295
           +    I  E  D  +  L +D+ G D++D + L  I  N+ GGPVGI  +++ +    D+
Sbjct: 241 SGKNIIEAEDVDNTMKLLEMDEDGLDKMDRKILKTIIENYEGGPVGINALASSIGIEPDS 300

Query: 296 IEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           I ++ EP+++Q GFI RTPRGR+    A+Q L    
Sbjct: 301 ISEVYEPFLLQAGFIIRTPRGRVATEKAYQKLNYTY 336


>gi|323698438|ref|ZP_08110350.1| Holliday junction DNA helicase RuvB [Desulfovibrio sp. ND132]
 gi|323458370|gb|EGB14235.1| Holliday junction DNA helicase RuvB [Desulfovibrio desulfuricans
           ND132]
          Length = 328

 Score =  353 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 177/312 (56%), Positives = 233/312 (74%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
               +RPR L +F GQV+  +NL VFI AA+ R  +LDH LF G PGLGKTTLA+++A E
Sbjct: 7   PEENVRPRKLSDFIGQVDLRTNLDVFIRAARERDRSLDHTLFYGNPGLGKTTLARIMASE 66

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           LGVN  STSGPVI ++GDLAA+LTNLE  D+LFIDEIHR+   VEE+LYPAMEDFQ+DL+
Sbjct: 67  LGVNMVSTSGPVIERSGDLAAILTNLERGDILFIDEIHRMPPTVEEVLYPAMEDFQIDLV 126

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
           +G GP AR+VK++L  FTL+ ATTR+GLLT+PL+DRFG   R+ FY  E+L  IV+R A 
Sbjct: 127 IGSGPGARTVKLDLEPFTLVGATTRLGLLTSPLRDRFGCIFRIEFYSPEELGRIVERSAA 186

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257
           + G+ V  E A  I  R+RGTPRIA RLLRRVRD+A V  +  +TRE+A+++L RL +D+
Sbjct: 187 ILGVKVEPEGALAIGRRARGTPRIANRLLRRVRDYALVHGSGVVTRELAESSLERLDVDQ 246

Query: 258 MGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317
            G D +D + LT++  +F GGPVG++TI+A  +E    IED+ EPY+IQ GF++RTPRGR
Sbjct: 247 YGLDNMDRKILTLMVEHFNGGPVGLKTIAAACAEEVRTIEDIYEPYLIQCGFLKRTPRGR 306

Query: 318 LLMPIAWQHLGI 329
           +    A+QHL +
Sbjct: 307 VATAKAYQHLKM 318


>gi|293381580|ref|ZP_06627567.1| Holliday junction DNA helicase RuvB [Lactobacillus crispatus 214-1]
 gi|290921850|gb|EFD98865.1| Holliday junction DNA helicase RuvB [Lactobacillus crispatus 214-1]
          Length = 336

 Score =  353 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 168/333 (50%), Positives = 228/333 (68%), Gaps = 2/333 (0%)

Query: 2   MDREGLLSRNV--SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M  + + S ++   +E      LRP+TL+++ GQ      + ++I+AA+ R EALDHVL 
Sbjct: 1   MAEDQVTSGDIENPKEQQMELSLRPQTLDQYLGQKRVKKEMSIYIKAARQRDEALDHVLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA V+A ELGV+ +STSGP I KAGDL ALL++L+  DVLFIDEIHRL+ 
Sbjct: 61  YGPPGLGKTTLAFVIANELGVHLKSTSGPAIEKAGDLVALLSDLDPGDVLFIDEIHRLAK 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEE+LY AMED+ +D+++GEG +  +V + L  FTLI ATT  G L+ PL+DRFGI   
Sbjct: 121 PVEEVLYSAMEDYYIDIVIGEGQTTHAVHVPLPPFTLIGATTLAGQLSAPLRDRFGIVEH 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           + +Y I++L+ IV R + +   ++  EAA E+A RSRGTPR+A RLL+RVRDFAEV   K
Sbjct: 181 MQYYTIDELEQIVLRSSDVFHTSIAPEAAHELARRSRGTPRVANRLLKRVRDFAEVKGEK 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           TI+ E  + AL +L +D  G DQ D R L  +   + GGPVGI T++A + E  + IE L
Sbjct: 241 TISLETTEGALKQLQVDDEGLDQTDRRLLRTMIEGYNGGPVGIRTLAANVGEDMETIESL 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
            EPY++Q GFI  TPRGR++   A+  LG+ IP
Sbjct: 301 YEPYLLQHGFILLTPRGRMVTDKAYLQLGLPIP 333


>gi|284050868|ref|ZP_06381078.1| Holliday junction DNA helicase RuvB [Arthrospira platensis str.
           Paraca]
 gi|291567135|dbj|BAI89407.1| Holliday junction DNA helicase RuvB [Arthrospira platensis NIES-39]
          Length = 369

 Score =  353 bits (906), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 169/336 (50%), Positives = 226/336 (67%), Gaps = 4/336 (1%)

Query: 3   DREGLLSRNVSQEDA----DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           D E LL  + + E+         +RP+ L ++ GQ +    L++ I AAK+R E LDH+L
Sbjct: 28  DDESLLIPSPTSEEKNHPKPEEKIRPQQLADYIGQRDLKQVLEIAIAAAKSRQEPLDHLL 87

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTT+A ++A E+GV  + T+ P + K  D+A LL N +  ++LFIDEIHRLS
Sbjct: 88  LYGPPGLGKTTMALILATEMGVKCQITTAPSLEKPRDIAGLLVNQKPGEILFIDEIHRLS 147

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            + EEILYPAMED +LD+ +G+G SAR+  I L++FT++ ATTR+G LT+PL+DRFG+  
Sbjct: 148 KMAEEILYPAMEDSRLDITIGQGRSARTRSIPLNKFTIVGATTRIGALTSPLRDRFGLIQ 207

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           RL FYE+++L  IV R AKL    +T E A EIA RSRGTPRIA RLLRRVRD+ EV  +
Sbjct: 208 RLRFYEVDELAQIVNRTAKLLTTPITPEGALEIARRSRGTPRIANRLLRRVRDYLEVKAS 267

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             IT EIA  AL    +D +G D  D   L +I  NF GGPVG+ET++A   E    +E+
Sbjct: 268 GAITGEIAAIALELFNVDPLGLDWTDQHLLRIIIENFQGGPVGLETLAAASGEDAQTLEE 327

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           + EPY++Q GF+QRT RGR+  P AWQHLG   P +
Sbjct: 328 VQEPYLMQIGFLQRTHRGRIATPKAWQHLGYQPPEK 363


>gi|260910790|ref|ZP_05917440.1| crossover junction endoribonuclease subunit B [Prevotella sp. oral
           taxon 472 str. F0295]
 gi|260635087|gb|EEX53127.1| crossover junction endoribonuclease subunit B [Prevotella sp. oral
           taxon 472 str. F0295]
          Length = 344

 Score =  353 bits (906), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 174/332 (52%), Positives = 233/332 (70%), Gaps = 1/332 (0%)

Query: 1   MMDREGLLS-RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M +   +   R    E    + LRP   ++F+GQ +   NL+VF+EAAK R E LDH L 
Sbjct: 1   MTEDFDIRDERTTPSEREFENALRPPKFQDFSGQSKVVENLEVFVEAAKYRGEPLDHTLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTL+ ++A ELGV F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS 
Sbjct: 61  HGPPGLGKTTLSNIIANELGVGFKITSGPVLDKPGDLAGILTSLEANDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE LY AMED+++D+M+ +GPSARS++I+L+ FTLI ATTR GLLT PL+ RFGI + 
Sbjct: 121 VVEEYLYSAMEDYRIDIMIDKGPSARSIQIDLNPFTLIGATTRSGLLTAPLRARFGINLH 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y+ + L  I++R A++  + + DEAA EI+ RSRGTPRIA  LLRRVRDFA+V    
Sbjct: 181 LEYYDPQTLARIIKRSARILNVPIDDEAAMEISRRSRGTPRIANALLRRVRDFAQVKGNG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           +I   IA  +L  L ID+ G D++D R L  I   F GGPVG+ TI+  + E    +E++
Sbjct: 241 SIDTVIARLSLTALNIDQYGLDEIDNRILLTIIDKFQGGPVGVSTIATAIGEDAGTLEEV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
            EPY+I +GFI+RT RGR++  +A+QHLG +I
Sbjct: 301 YEPYLIMEGFIKRTQRGRMVTELAYQHLGRNI 332


>gi|269118811|ref|YP_003306988.1| Holliday junction DNA helicase RuvB [Sebaldella termitidis ATCC
           33386]
 gi|268612689|gb|ACZ07057.1| Holliday junction DNA helicase RuvB [Sebaldella termitidis ATCC
           33386]
          Length = 339

 Score =  353 bits (906), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 170/330 (51%), Positives = 232/330 (70%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D + +L+     ED     LRPRT  E+ GQ      + +FI AA++R EA+DH+L  
Sbjct: 1   MEDIDRILTDKELSEDNVQKSLRPRTFNEYIGQKLLKEKMSIFIRAAQSRNEAMDHILLY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA V+A E+GVN + T+GPV+ KAGDLAA+LT+LE+ D+LFIDEIHRL+  
Sbjct: 61  GPPGLGKTTLAGVIANEMGVNLKITTGPVLEKAGDLAAILTSLEENDILFIDEIHRLNTS 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILYPAMED +LD+++G+GPSARS++I L +FTLI ATT+ G L+ PL+DRFG+  ++
Sbjct: 121 VEEILYPAMEDGELDILIGKGPSARSIRIELPKFTLIGATTKAGQLSTPLRDRFGVTHKM 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y IE+LK I+ RG  + G+   +    EIAMRSRGTPRIA RLL+R RD+AE+     
Sbjct: 181 EYYNIEELKEILVRGIAILGIKAEENGIEEIAMRSRGTPRIANRLLKRARDYAEIKGTGV 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           + ++     L  L ID+ G D+LD   L  I  N+ GGPVGIET+S  L E +  IE++ 
Sbjct: 241 LNQKSVKGVLDLLGIDEKGLDELDRSILKSIIVNYDGGPVGIETLSLLLGEDKRTIEEVY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           EPY+++ GFI+RT RGR++    + HLG++
Sbjct: 301 EPYLVKIGFIKRTQRGRVVTNRGYVHLGLE 330


>gi|227877606|ref|ZP_03995660.1| crossover junction endoribonuclease subunit B [Lactobacillus
           crispatus JV-V01]
 gi|256849060|ref|ZP_05554493.1| Holliday junction DNA helicase B [Lactobacillus crispatus MV-1A-US]
 gi|262047542|ref|ZP_06020497.1| Holliday junction DNA helicase RuvB [Lactobacillus crispatus
           MV-3A-US]
 gi|227862800|gb|EEJ70265.1| crossover junction endoribonuclease subunit B [Lactobacillus
           crispatus JV-V01]
 gi|256713836|gb|EEU28824.1| Holliday junction DNA helicase B [Lactobacillus crispatus MV-1A-US]
 gi|260572118|gb|EEX28683.1| Holliday junction DNA helicase RuvB [Lactobacillus crispatus
           MV-3A-US]
          Length = 339

 Score =  353 bits (906), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 166/322 (51%), Positives = 222/322 (68%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
              +E      LRP+TL+++ GQ      + ++I+AA+ R EALDHVL  GPPGLGKTTL
Sbjct: 15  ENPEEQQMELSLRPQTLDQYLGQKRVKKEMSIYIKAARQRDEALDHVLLYGPPGLGKTTL 74

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           A V+A ELGV+ +STSGP I KAGDL ALL++L+  DVLFIDEIHRL+  VEE+LY AME
Sbjct: 75  AFVIANELGVHLKSTSGPAIEKAGDLVALLSDLDPGDVLFIDEIHRLAKPVEEVLYSAME 134

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           D+ +D+++GEG +  +V + L  FTLI ATT  G L+ PL+DRFGI   + +Y I++L+ 
Sbjct: 135 DYYIDIVIGEGQTTHAVHVPLPPFTLIGATTLAGQLSAPLRDRFGIVEHMQYYTIDELEQ 194

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           IV R + +   ++  EAA E+A RSRGTPR+A RLL+RVRDFAEV   KTI+ E  + AL
Sbjct: 195 IVLRSSDVFHTSIAPEAAHELARRSRGTPRVANRLLKRVRDFAEVKGEKTISLETTEGAL 254

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
            +L +D  G DQ D R L  +   + GGPVGI T++A + E  + IE L EPY++Q GFI
Sbjct: 255 KQLQVDDEGLDQTDRRLLRTMIEGYNGGPVGIRTLAANVGEDMETIESLYEPYLLQHGFI 314

Query: 311 QRTPRGRLLMPIAWQHLGIDIP 332
             TPRGR++   A+  LG+ IP
Sbjct: 315 LLTPRGRMVTDKAYLQLGLPIP 336


>gi|296126244|ref|YP_003633496.1| Holliday junction DNA helicase RuvB [Brachyspira murdochii DSM
           12563]
 gi|296018060|gb|ADG71297.1| Holliday junction DNA helicase RuvB [Brachyspira murdochii DSM
           12563]
          Length = 345

 Score =  353 bits (906), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 174/330 (52%), Positives = 232/330 (70%), Gaps = 1/330 (0%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD+E +++   +  D + +  +RP+  ++F GQ    S LKVFI++A  R  +LDH+LF 
Sbjct: 1   MDKESIINAEETSYDKEDNNSIRPKGFDDFLGQNNIKSKLKVFIKSALKRDVSLDHILFY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ++A E+G + ++TS P+I + GDLA++LT L ++D+LFIDEIHRL  +
Sbjct: 61  GPPGLGKTTLAQIIANEMGSSIKATSAPIIERPGDLASILTTLGEKDILFIDEIHRLRTV 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LY AMEDF +D+ VGEG SA+S ++ L  FTLI ATTR GLL+ PL DRFGI  RL
Sbjct: 121 VEEVLYSAMEDFFVDIKVGEGTSAKSFRVKLPHFTLIGATTRSGLLSTPLYDRFGIVERL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  EDL  IV+R +K   + +TD AA  IA RSRGTPRI  RLLRRV DFA V     
Sbjct: 181 EFYTNEDLANIVKRSSKFLDIDITDSAALSIASRSRGTPRIVNRLLRRVFDFATVHDVLK 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I  E A  +L +L IDK GF+ LD  YL  I +++ GGPVG++T+S  LSE  + IED+I
Sbjct: 241 IDEEFASNSLEKLGIDKNGFEALDKLYLNTIIKHYNGGPVGVDTLSVSLSEQIETIEDVI 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           EPY+IQ GFI+RTP+GR+    A+ +L + 
Sbjct: 301 EPYLIQSGFIKRTPKGRVATNKAYSYLNLS 330


>gi|306834524|ref|ZP_07467637.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           bovis ATCC 700338]
 gi|304423326|gb|EFM26479.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           bovis ATCC 700338]
          Length = 332

 Score =  353 bits (906), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 168/323 (52%), Positives = 227/323 (70%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +  E+     LRP+ L+E+ GQ +  + LK+FIEAAK R E+LDHVL  GPPGLGKTT+A
Sbjct: 10  MGDEEFAERTLRPQFLKEYIGQDKVKNQLKIFIEAAKLRDESLDHVLLFGPPGLGKTTMA 69

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            V+  ELGVN + TSGP I KAGDL A+L +LE  DVLFIDEIHR+ + VEE+LY AMED
Sbjct: 70  FVITNELGVNLKQTSGPAIEKAGDLVAILNDLEPGDVLFIDEIHRMPMAVEEVLYSAMED 129

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F +D+M+G G ++RSV ++L  FTLI ATTR G+L+NPL+ RFGI   + +Y++EDL  I
Sbjct: 130 FYIDIMIGNGETSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYDVEDLTEI 189

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           V+R A +  + +  EAA E+A RSRGTPRIA RLL+RVRD+A++     IT++I D AL 
Sbjct: 190 VERTADIFEMEIVHEAAQELARRSRGTPRIANRLLKRVRDYAQIMGDGIITKDITDKALT 249

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L +D  G D +D + L  +   + GGPVG+ T+S  ++E RD +ED+ EPY+IQ+GFI 
Sbjct: 250 MLDVDHEGLDYIDQKILRTMIEVYNGGPVGLGTLSVNIAEERDTVEDMYEPYLIQKGFIM 309

Query: 312 RTPRGRLLMPIAWQHLGIDIPHR 334
           RT  GR+    A++HLG     +
Sbjct: 310 RTRTGRVATEKAYEHLGYPYSEK 332


>gi|227499580|ref|ZP_03929687.1| crossover junction endoribonuclease subunit B [Anaerococcus
           tetradius ATCC 35098]
 gi|227218339|gb|EEI83593.1| crossover junction endoribonuclease subunit B [Anaerococcus
           tetradius ATCC 35098]
          Length = 335

 Score =  353 bits (906), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 174/333 (52%), Positives = 234/333 (70%), Gaps = 2/333 (0%)

Query: 1   MMDRE-GLLSRNVSQEDAD-ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M D    ++  N   ED    + +RP+ L+++ GQ +    L +FI+++ +R E LDHVL
Sbjct: 1   MYDENKRIVGSNEQIEDLQSENSIRPKWLKDYIGQDKVKEKLDIFIKSSLSRNEPLDHVL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTL+ ++A ELGVN R TSGP I +  DLA++LTNL D DVLFIDEIHR++
Sbjct: 61  LQGPPGLGKTTLSTIIANELGVNLRVTSGPAIERPSDLASILTNLSDGDVLFIDEIHRIN 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
             VEEILY AMEDF LD++VG+GP+A+S++I+L RFTLI ATTR G+L+ PL+DRFG+ +
Sbjct: 121 RSVEEILYSAMEDFVLDIIVGKGPNAQSIRIDLDRFTLIGATTRAGMLSAPLRDRFGVLL 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
            LN Y+ +DL TIV+R A++ G+A+ ++ A EIA RSRGTPRIA RLL+RVRDFA V   
Sbjct: 181 ALNLYDTKDLTTIVKRSAQILGIAIDEKGAVEIARRSRGTPRIANRLLKRVRDFAIVRAN 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             I  E +   L  L ID MG D +D + +  +  NF GGPVG++TI+A        IED
Sbjct: 241 DQIDYETSKKGLELLEIDPMGLDTMDKKIIMTMYDNFAGGPVGVDTIAASTGIENVTIED 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           + EPY++Q GFI RTPRGR+L   A++H G+ I
Sbjct: 301 VYEPYLLQIGFISRTPRGRVLTRKAYEHYGLKI 333


>gi|15604251|ref|NP_220767.1| Holliday junction DNA helicase RuvB [Rickettsia prowazekii str.
           Madrid E]
 gi|6226116|sp|Q9ZDE5|RUVB_RICPR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|3860943|emb|CAA14843.1| HOLLIDAY JUNCTION DNA HELICASE RUVB (ruvB) [Rickettsia prowazekii]
 gi|292571995|gb|ADE29910.1| Holliday junction DNA helicase RuvB [Rickettsia prowazekii Rp22]
          Length = 342

 Score =  353 bits (905), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 192/329 (58%), Positives = 249/329 (75%), Gaps = 1/329 (0%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            +LS   S+ D ++  +RP  L+EF GQ +   NL VFI+AAK+R E LDH LF GPPGL
Sbjct: 3   NILSPEKSEHDQELP-IRPSYLKEFVGQQQIKENLLVFIKAAKSRNEHLDHTLFYGPPGL 61

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLA++++ E+G NF+ST+GP I KA DLA++LTNLE  DVLFIDEIHRL+ +VEE+L
Sbjct: 62  GKTTLAKIISNEIGGNFKSTAGPAIIKAADLASILTNLEKNDVLFIDEIHRLNTLVEEVL 121

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           Y AMEDF+LD+++GEG +AR VKI L +FTLI ATTR GL++NPL+DRFGIP+RLNFY  
Sbjct: 122 YSAMEDFELDIIIGEGSAARPVKITLPKFTLIGATTRFGLISNPLRDRFGIPMRLNFYNT 181

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           E+LK ++ R +KL  + +TD  + EIA RSRGTPRIA RLLRR+RDFA V     I +EI
Sbjct: 182 EELKQVLNRASKLLDIDLTDSGSEEIAKRSRGTPRIALRLLRRIRDFAVVDGKSRIDKEI 241

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
            D  L RL +D +G D  D RYL  IA N+ GGPVGIETI+A LSE RD +E+ IEPY+I
Sbjct: 242 CDFGLKRLTVDSIGLDSNDYRYLKFIADNYHGGPVGIETIAAALSEQRDELEETIEPYLI 301

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           + G ++RTPRGR++   A++HL + IP++
Sbjct: 302 KIGLVKRTPRGRVITIAAFEHLKMPIPNK 330


>gi|288928677|ref|ZP_06422523.1| holliday junction DNA helicase RuvB [Prevotella sp. oral taxon 317
           str. F0108]
 gi|288329661|gb|EFC68246.1| holliday junction DNA helicase RuvB [Prevotella sp. oral taxon 317
           str. F0108]
          Length = 344

 Score =  353 bits (905), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 174/332 (52%), Positives = 233/332 (70%), Gaps = 1/332 (0%)

Query: 1   MMDREGLLS-RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M +   +   R    E    + LRP   ++F+GQ +   NL+VF+EAAK R E LDH L 
Sbjct: 1   MTEDFDIRDERTTPSEREFENALRPPKFQDFSGQSKVVENLEVFVEAAKYRGEPLDHTLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTL+ ++A ELGV F+ TSGPV+ K GDLA +LT+LE  DVLFIDEIHRLS 
Sbjct: 61  HGPPGLGKTTLSNIIANELGVGFKITSGPVLDKPGDLAGILTSLEINDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE LY AMED+++D+M+ +GPSARS++I+L+ FTLI ATTR GLLT PL+ RFGI + 
Sbjct: 121 VVEEYLYSAMEDYRIDIMIDKGPSARSIQIDLNPFTLIGATTRSGLLTAPLRARFGINLH 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y+ + L  I++R A++  + + DEAA EI+ RSRGTPRIA  LLRRVRDFA+V    
Sbjct: 181 LEYYDPQTLARIIKRSARILNVPIDDEAAMEISRRSRGTPRIANALLRRVRDFAQVKGNG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           +I   IA  +L  L ID+ G D++D R L  I   F GGPVG+ TI+  + E    +E++
Sbjct: 241 SIDTVIARLSLTALNIDQYGLDEIDNRILLTIIDKFKGGPVGVSTIATAIGEDAGTLEEV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
            EPY+I +GFI+RT RGR++  +A+QHLG +I
Sbjct: 301 YEPYLIMEGFIKRTQRGRMVTELAYQHLGRNI 332


>gi|269792532|ref|YP_003317436.1| Holliday junction DNA helicase RuvB [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100167|gb|ACZ19154.1| Holliday junction DNA helicase RuvB [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 347

 Score =  353 bits (905), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 170/337 (50%), Positives = 232/337 (68%), Gaps = 3/337 (0%)

Query: 1   MMDREGLLSRNVSQEDADI---SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M   E L+ R   ++D D+     LRP +L+ F GQ      L++FI A+K R E LDH 
Sbjct: 1   MGSDEKLMHRLREEDDGDVVAGRALRPESLDSFVGQEALKEKLRIFIAASKGRGEPLDHC 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           LF GPPGLGKTT+A ++ARE+G + R T+GP I +AGDLAA+L+NL  +DVLFIDEIHRL
Sbjct: 61  LFYGPPGLGKTTMANIIAREMGGDLRVTTGPAIERAGDLAAILSNLRPKDVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             +VEE+LY AMEDF L++++G+GP ARS+K+ L  FTL+ ATTR+GLLT+PL+ RFGI 
Sbjct: 121 PSVVEEVLYSAMEDFCLNIVIGKGPMARSIKLQLPPFTLVGATTRLGLLTSPLRARFGIV 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            ++  Y  E+L  IV+RGA++ G+++ DEA+ EI  RSRGTPR+A RLLRRVRD A V+ 
Sbjct: 181 EQMELYTPEELTAIVRRGAEILGMSIEDEASYEIGRRSRGTPRVALRLLRRVRDVASVSG 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
              I  + A  AL  L +DK G D  D ++L  +   F GGPVG+ T++A L+E    IE
Sbjct: 241 VAVIDIKTAKGALDMLGVDKEGLDDGDRKFLRALVELFDGGPVGLSTLAAALNEDPQTIE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           D+ EP++IQ+G ++RTPRGR      + +LG+    R
Sbjct: 301 DIYEPFLIQKGLLERTPRGRKATRGTYSYLGVQPSGR 337


>gi|289450847|ref|YP_003475226.1| Holliday junction DNA helicase RuvB [Clostridiales genomosp. BVAB3
           str. UPII9-5]
 gi|289185394|gb|ADC91819.1| Holliday junction DNA helicase RuvB [Clostridiales genomosp. BVAB3
           str. UPII9-5]
          Length = 372

 Score =  353 bits (905), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 179/331 (54%), Positives = 240/331 (72%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           + + +++     ED D   LRP    ++ GQ +  +NL+VFI+AA  R EALDHVL  GP
Sbjct: 37  EPDRMVAYRRINEDRDEPSLRPLVWSDYYGQDKVKANLQVFIQAALERNEALDHVLLYGP 96

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++A E+  N R TSGP I KAGDLAA+LTNL+ RDVLFIDEIHRL+  VE
Sbjct: 97  PGLGKTTLAGIIAGEMKSNLRITSGPAIEKAGDLAAILTNLQPRDVLFIDEIHRLNHSVE 156

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILYPAMED  LDLM+G+GPSARSV+++L+ FTL+ ATT+ G L+ PL+DRFG+  RL  
Sbjct: 157 EILYPAMEDRVLDLMIGKGPSARSVRLDLAPFTLVGATTKAGNLSAPLRDRFGVINRLEL 216

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y+++DL  I++R A++  + +T+EA   +A RSRGTPRIA RLLRR+RDFA+VA   T+T
Sbjct: 217 YDVKDLAAILKRDAEIMHIGITEEAVTCLAERSRGTPRIAIRLLRRLRDFAQVASTSTVT 276

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           R IA+  L  L ID++G D+ D   L  I   + GGPVG++TI+A   E R+ IED+ EP
Sbjct: 277 RTIAENGLKALCIDELGLDETDRNILIKIIDFYHGGPVGLDTIAAITGEDRNTIEDMYEP 336

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           Y++Q GF+ +TPRGR+L P A++H+   +P 
Sbjct: 337 YLMQLGFLSKTPRGRVLTPAAFKHVNRPVPD 367


>gi|256844551|ref|ZP_05550037.1| Holliday junction DNA helicase RuvB [Lactobacillus crispatus
           125-2-CHN]
 gi|256613629|gb|EEU18832.1| Holliday junction DNA helicase RuvB [Lactobacillus crispatus
           125-2-CHN]
          Length = 339

 Score =  353 bits (905), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 166/322 (51%), Positives = 222/322 (68%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
              +E      LRP+TL+++ GQ      + ++I+AA+ R EALDHVL  GPPGLGKTTL
Sbjct: 15  ENPEEQQMELSLRPQTLDQYLGQKRVKKEMSIYIKAARQRDEALDHVLLYGPPGLGKTTL 74

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           A V+A ELGV+ +STSGP I KAGDL ALL++L+  DVLFIDEIHRL+  VEE+LY AME
Sbjct: 75  AFVIANELGVHLKSTSGPAIEKAGDLVALLSDLDPGDVLFIDEIHRLAKPVEEVLYSAME 134

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           D+ +D+++GEG +  +V + L  FTLI ATT  G L+ PL+DRFGI   + +Y I++L+ 
Sbjct: 135 DYYIDIVIGEGQTTHAVHVPLPPFTLIGATTLAGELSAPLRDRFGIVEHMQYYTIDELEQ 194

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           IV R + +   ++  EAA E+A RSRGTPR+A RLL+RVRDFAEV   KTI+ E  + AL
Sbjct: 195 IVLRSSDVFHTSIAPEAAHELARRSRGTPRVANRLLKRVRDFAEVKGEKTISLETTEGAL 254

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
            +L +D  G DQ D R L  +   + GGPVGI T++A + E  + IE L EPY++Q GFI
Sbjct: 255 KQLQVDDEGLDQTDRRLLRTMIEGYNGGPVGIRTLAANVGEDMETIESLYEPYLLQHGFI 314

Query: 311 QRTPRGRLLMPIAWQHLGIDIP 332
             TPRGR++   A+  LG+ IP
Sbjct: 315 LLTPRGRMVTDKAYLQLGLPIP 336


>gi|319400967|gb|EFV89186.1| holliday junction DNA helicase RuvB [Staphylococcus epidermidis
           FRI909]
          Length = 334

 Score =  353 bits (905), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 170/334 (50%), Positives = 231/334 (69%), Gaps = 2/334 (0%)

Query: 2   MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD+  ++ +    ED D+ L LRP  L+++ GQ    SNL+VFI+AAK R E LDHVL  
Sbjct: 1   MDK-RMVDQEFHNEDTDLELSLRPTQLKQYIGQSSIKSNLEVFIKAAKLRQEPLDHVLLF 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTL+ ++A E+ VN R+ SGP + + GDLAA+L+ L+  DVLFIDEIHRLS +
Sbjct: 60  GPPGLGKTTLSNIIANEMNVNIRTISGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSV 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDF LD+++G+G  ARS++I+L  FTL+ ATTR G LT PL+DRFG+ +RL
Sbjct: 120 VEEVLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATTRAGSLTGPLRDRFGVHLRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y   DLK I+ R A++ G  +  E+A E+A RSRGTPRIA RLL+RVRDF +V     
Sbjct: 180 EYYNENDLKEIITRTAEVLGTDIDKESALELARRSRGTPRIANRLLKRVRDFQQVNEDDQ 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I  E    AL  L +D+ G D +D + +  I   + GGPVG++TI+  + E R  IED+ 
Sbjct: 240 IYIETTKRALQLLQVDQQGLDYIDHKMMNCIINQYNGGPVGLDTIAVSIGEERVTIEDVY 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           EP++IQ+GF++RTPRGR    +A++H       R
Sbjct: 300 EPFLIQKGFLERTPRGRKATALAFEHFNTTNEKR 333


>gi|186684524|ref|YP_001867720.1| Holliday junction DNA helicase RuvB [Nostoc punctiforme PCC 73102]
 gi|238691198|sp|B2ITR9|RUVB_NOSP7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|186466976|gb|ACC82777.1| Holliday junction DNA helicase RuvB [Nostoc punctiforme PCC 73102]
          Length = 366

 Score =  352 bits (904), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 158/331 (47%), Positives = 222/331 (67%), Gaps = 2/331 (0%)

Query: 5   EGLLSRNVS--QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           E +L    +  +++     +RP    ++ GQ +    L + I+AAK+R E LDH+L  GP
Sbjct: 30  ENILKPEAAIDEQEQQEEGIRPHRFADYIGQKDLKDVLDIAIKAAKSRGEVLDHLLLYGP 89

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTT+A ++A E+GVN++ TS P + +  D+  LL N++  D+LF+DEIHRLS + E
Sbjct: 90  PGLGKTTMAMILASEMGVNYKITSAPALERPRDIVGLLVNMKPGDILFVDEIHRLSRMTE 149

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILYPAMED++LD+ +G+G SAR   + LS+FTL+ ATTRVG LT+PL+DRFG+  +L F
Sbjct: 150 EILYPAMEDYRLDITIGKGSSARIRSLPLSKFTLVGATTRVGALTSPLRDRFGLIQKLRF 209

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           YE+++L  IV R A+L    VT + A EIA RSRGTPRIA RLL+RVRD+AEV  +  I 
Sbjct: 210 YEVDELTQIVLRTAQLLKTPVTQDGATEIARRSRGTPRIANRLLKRVRDYAEVKVSGVIN 269

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             IA  AL    +D  G D  D + L++I   F GGPVG+ET++A   E    IE++ EP
Sbjct: 270 ESIASEALQLFQVDPCGLDWTDRQMLSVIIEQFNGGPVGLETMAAATGEDTQTIEEVYEP 329

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           Y++Q G++ RT RGR+    A++HLG   P+
Sbjct: 330 YLMQIGYLTRTHRGRMATKAAYKHLGFTPPN 360


>gi|227432399|ref|ZP_03914389.1| Holliday junction DNA helicase B [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
 gi|227351838|gb|EEJ42074.1| Holliday junction DNA helicase B [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
          Length = 369

 Score =  352 bits (904), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 161/322 (50%), Positives = 212/322 (65%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
            +E      LRP+ L E+ GQ      L V+I AAK R EALDHVL  GPPGLGKTTLA 
Sbjct: 47  DEEQRSELSLRPQFLREYIGQEALKEELNVYISAAKQREEALDHVLLFGPPGLGKTTLAM 106

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++A E+ VN ++TSGP I K GDL ALL  LE  D+LFIDEIHR+   +EEI+Y AMED+
Sbjct: 107 IIANEMNVNIKTTSGPAIEKPGDLVALLNELEPGDILFIDEIHRIPTNIEEIMYSAMEDY 166

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            +D+MVG+GP+AR V   L  FTLI ATTR G+L+ PL+DRFGI   L +Y  E+L+ IV
Sbjct: 167 FVDIMVGQGPTARPVHFPLPPFTLIGATTRPGMLSKPLRDRFGIINSLQYYTPEELQQIV 226

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R A +    +  E A EI++RSRGTPRIA RLL+RVRDFA+V     I + I    L +
Sbjct: 227 VRTADIFNAPIKSEGAYEISLRSRGTPRIANRLLKRVRDFAQVEGKDAIDKNIVTIGLDK 286

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D  G D+ D + L  +   + GGPVG+ TI+A + E  + +E ++EPY++Q GF+QR
Sbjct: 287 LRVDNRGLDETDHKLLETMIEYYKGGPVGLNTIAANIGEESETLEAMVEPYLLQIGFLQR 346

Query: 313 TPRGRLLMPIAWQHLGIDIPHR 334
           TPRGR++    + HLG     +
Sbjct: 347 TPRGRVVTEAGYTHLGHAYQRK 368


>gi|320528953|ref|ZP_08030045.1| Holliday junction DNA helicase RuvB [Selenomonas artemidis F0399]
 gi|320138583|gb|EFW30473.1| Holliday junction DNA helicase RuvB [Selenomonas artemidis F0399]
          Length = 344

 Score =  352 bits (904), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 171/331 (51%), Positives = 227/331 (68%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           + E L+S      D     LRPR L E+ GQ +   NL  FI+AA +R EALDHVL  GP
Sbjct: 5   NEEELVSFEEQSTDGWQYSLRPRRLSEYIGQDKIKDNLSKFIQAALSRGEALDHVLLYGP 64

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++A E+G NFR TS P I + GDLA+LLTNL+D DVLFIDEIHRLS  VE
Sbjct: 65  PGLGKTTLAGIIANEMGANFRQTSAPAIERQGDLASLLTNLQDHDVLFIDEIHRLSHHVE 124

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILY AMED  +D+++G+GPSARS++++L+ FTL+ ATT+ G L+ PL+DRFGI  RL +
Sbjct: 125 EILYSAMEDHAIDIIIGKGPSARSIRLDLAPFTLVGATTKTGALSAPLRDRFGIQTRLEY 184

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  E L  I++R A++  + +  E A EIA RSRGTPR+A R+L+RVRD A+VA    I+
Sbjct: 185 YTPEALLLIIERTAEILSVTIEHEGALEIARRSRGTPRVANRILKRVRDIAQVAGEDIIS 244

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            +   AAL  L +D+ G +  D   L ++   F G PVG++T++A LSE  + IED+ EP
Sbjct: 245 HKTTLAALTALEVDEQGLENKDRTMLEVMITKFSGRPVGLKTLAAALSEMPETIEDVYEP 304

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           Y+IQ GFI RT RGR++    ++H+ I  P 
Sbjct: 305 YLIQLGFIARTARGRIVTRGGYEHMKIAYPE 335


>gi|313895524|ref|ZP_07829080.1| Holliday junction DNA helicase RuvB [Selenomonas sp. oral taxon 137
           str. F0430]
 gi|312975650|gb|EFR41109.1| Holliday junction DNA helicase RuvB [Selenomonas sp. oral taxon 137
           str. F0430]
          Length = 344

 Score =  352 bits (904), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 171/331 (51%), Positives = 227/331 (68%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           + E L+S      D     LRPR L E+ GQ +   NL  FI+AA +R EALDHVL  GP
Sbjct: 5   NEEELVSFEEQSTDGWQYSLRPRRLSEYIGQDKIKDNLSKFIQAALSRGEALDHVLLYGP 64

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++A E+G NFR TS P I + GDLA+LLTNL+D DVLFIDEIHRLS  VE
Sbjct: 65  PGLGKTTLAGIIANEMGANFRQTSAPAIERQGDLASLLTNLQDHDVLFIDEIHRLSHHVE 124

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILY AMED  +D+++G+GPSARS++++L+ FTL+ ATT+ G L+ PL+DRFGI  RL +
Sbjct: 125 EILYSAMEDHAIDIIIGKGPSARSIRLDLAPFTLVGATTKTGALSAPLRDRFGIQARLEY 184

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  E L  I++R A++  + +  E A EIA RSRGTPR+A R+L+RVRD A+VA    I+
Sbjct: 185 YTPEALLLIIERTAEILSVTIEHEGALEIARRSRGTPRVANRILKRVRDIAQVAGEDIIS 244

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            +   AAL  L +D+ G +  D   L ++   F G PVG++T++A LSE  + IED+ EP
Sbjct: 245 HKTTLAALTALEVDEQGLENKDRTMLEVMITKFSGRPVGLKTLAAALSEMPETIEDVYEP 304

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           Y+IQ GFI RT RGR++    ++H+ I  P 
Sbjct: 305 YLIQLGFIARTARGRIVTRGGYEHMKIAYPE 335


>gi|256852229|ref|ZP_05557615.1| Holliday junction DNA helicase RuvB [Lactobacillus jensenii
           27-2-CHN]
 gi|260661739|ref|ZP_05862650.1| Holliday junction DNA helicase RuvB [Lactobacillus jensenii
           115-3-CHN]
 gi|282932643|ref|ZP_06338057.1| holliday junction DNA helicase RuvB [Lactobacillus jensenii 208-1]
 gi|256615275|gb|EEU20466.1| Holliday junction DNA helicase RuvB [Lactobacillus jensenii
           27-2-CHN]
 gi|260547486|gb|EEX23465.1| Holliday junction DNA helicase RuvB [Lactobacillus jensenii
           115-3-CHN]
 gi|281303217|gb|EFA95405.1| holliday junction DNA helicase RuvB [Lactobacillus jensenii 208-1]
          Length = 337

 Score =  352 bits (904), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 165/335 (49%), Positives = 225/335 (67%), Gaps = 2/335 (0%)

Query: 1   MMDRE-GLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           MMD +  +++    Q D    L LRP++  ++ GQ    S ++++I+AAK R EALDHVL
Sbjct: 1   MMDEDSRVVAGEEEQGDLQDELSLRPQSFSQYIGQKRVKSEMEIYIQAAKKRDEALDHVL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTT+A V+A ELGVN ++TSGP I +AGDL ALL++L+  DVLFIDEIHRL+
Sbjct: 61  LYGPPGLGKTTMAFVIANELGVNLKNTSGPAIERAGDLVALLSDLDPGDVLFIDEIHRLA 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
             +EEILY AMED+ +D++VGEG ++ +V + L  FTLI ATTR G L+ PL+DRFGI  
Sbjct: 121 KPIEEILYSAMEDYYVDIVVGEGSTSHAVHVPLPPFTLIGATTRAGDLSAPLRDRFGIVE 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
            + +Y I DL+ I+QR +++    +  EAA E+A RSRGTPR+A RLL+RVRD+A+V   
Sbjct: 181 HMQYYTIGDLEKIIQRSSEVFATKIGKEAAHELARRSRGTPRVANRLLKRVRDYAQVKEE 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             I+      AL +L +D  G D  D + L  I   + GGPVGI T++A + E  D IE 
Sbjct: 241 NKISLATTKYALDQLQVDNEGLDLTDRKILRTIIEAYHGGPVGIRTLAANIGEDTDTIEA 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           + EPY++Q  FI  TPRGR+    A+  LGI +P 
Sbjct: 301 VYEPYLLQHKFITMTPRGRVATQKAYLQLGIPLPE 335


>gi|209965100|ref|YP_002298015.1| holliday junction DNA helicase RuvB [Rhodospirillum centenum SW]
 gi|226698782|sp|B6ITI4|RUVB_RHOCS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|209958566|gb|ACI99202.1| holliday junction DNA helicase RuvB [Rhodospirillum centenum SW]
          Length = 362

 Score =  352 bits (904), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 205/328 (62%), Positives = 253/328 (77%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           + L+ ++    DA  + +RP +L EF GQ +   NL VFI+AA+ R EALDHVL  GPPG
Sbjct: 8   QRLVEQDRIGGDAAEASIRPLSLAEFIGQRQVRENLSVFIQAARGRKEALDHVLLFGPPG 67

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLAQ+VA+EL V FR+TSGPVIAKAGDLAALLTNL+  DVLFIDEIHRLS  VEEI
Sbjct: 68  LGKTTLAQIVAKELNVGFRATSGPVIAKAGDLAALLTNLQPHDVLFIDEIHRLSPAVEEI 127

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPAMEDFQLDL++GEGP+ARSV+I+L  FTL+ ATTR GL+T PL++RFGIP+R+ FYE
Sbjct: 128 LYPAMEDFQLDLIIGEGPAARSVRIDLPPFTLVGATTRSGLITRPLRERFGIPLRMQFYE 187

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            E+L+ IV RGA++ G+ +T E A EIA RSRGTPR+AGRLLRRVRD   VA    +   
Sbjct: 188 PEELQLIVARGARILGMELTGEGALEIARRSRGTPRVAGRLLRRVRDICGVAGLAVVDAA 247

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
            A  AL RL +D++GFD +D RYL  IA N+GGGPVG+ET+ A L E RD +E+ IEPY+
Sbjct: 248 AAGGALTRLEVDRLGFDAMDRRYLRCIADNYGGGPVGVETLGAALGEQRDVLEETIEPYL 307

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           IQQG +QRTPRGRLL    +++LG+  P
Sbjct: 308 IQQGLLQRTPRGRLLTDSGYRYLGLPPP 335


>gi|295692270|ref|YP_003600880.1| holliday junction ATP-dependent DNA helicase ruvb [Lactobacillus
           crispatus ST1]
 gi|295030376|emb|CBL49855.1| Holliday junction ATP-dependent DNA helicase ruvB [Lactobacillus
           crispatus ST1]
          Length = 339

 Score =  352 bits (904), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 165/322 (51%), Positives = 222/322 (68%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
              +E      LRP+TL+++ GQ      + ++I+AA+ R EALDHVL  GPPGLGKTTL
Sbjct: 15  ENPEEQQMELSLRPQTLDQYLGQKRVKKEMSIYIKAARQRDEALDHVLLYGPPGLGKTTL 74

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           A V+A ELGV+ +STSGP I K+GDL ALL++L+  DVLFIDEIHRL+  VEE+LY AME
Sbjct: 75  AFVIANELGVHLKSTSGPAIEKSGDLVALLSDLDPGDVLFIDEIHRLAKPVEEVLYSAME 134

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           D+ +D+++GEG +  +V + L  FTLI ATT  G L+ PL+DRFGI   + +Y I++L+ 
Sbjct: 135 DYYIDIVIGEGQTTHAVHVPLPPFTLIGATTLAGQLSAPLRDRFGIVEHMQYYTIDELEQ 194

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           IV R + +   ++  EAA E+A RSRGTPR+A RLL+RVRDFAEV   KTI+ E  + AL
Sbjct: 195 IVLRSSDVFHTSIAPEAAHELARRSRGTPRVANRLLKRVRDFAEVKGEKTISLETTEGAL 254

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
            +L +D  G DQ D R L  +   + GGPVGI T++A + E  + IE L EPY++Q GFI
Sbjct: 255 KQLQVDDEGLDQTDRRLLRTMIEGYNGGPVGIRTLAANVGEDMETIESLYEPYLLQHGFI 314

Query: 311 QRTPRGRLLMPIAWQHLGIDIP 332
             TPRGR++   A+  LG+ IP
Sbjct: 315 LLTPRGRMVTDKAYLQLGLPIP 336


>gi|319945933|ref|ZP_08020183.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           australis ATCC 700641]
 gi|319747998|gb|EFW00242.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           australis ATCC 700641]
          Length = 354

 Score =  352 bits (904), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 173/320 (54%), Positives = 227/320 (70%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +  E+A    LRP+ L E+ GQ +    LK+FIEAAK R EALDHVL  GPPGLGKTT+A
Sbjct: 32  MGDEEAVERTLRPQYLHEYIGQDKVKDQLKIFIEAAKLRDEALDHVLLFGPPGLGKTTMA 91

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            V+A ELGVN + TSGPVI KAGDL A+L +LE  DVLFIDEIHRL + VEE+LY AMED
Sbjct: 92  FVIANELGVNLKQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMED 151

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F +D+M+G G ++RSV ++L  FTLI ATTR G+L+NPL+ RFGI   + +YE +DL  I
Sbjct: 152 FYIDIMIGAGETSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYEQDDLTEI 211

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           V+R A++  + +T EAA E+++RSRGTPRIA RLL+RVRDFA++     I   I D AL 
Sbjct: 212 VERTAEIFEMEITHEAAEELSLRSRGTPRIANRLLKRVRDFAQIMGDGLIDDTITDKALS 271

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L +D  G D +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GFI 
Sbjct: 272 MLDVDHEGLDYVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIM 331

Query: 312 RTPRGRLLMPIAWQHLGIDI 331
           RT  GR+    A++HLG   
Sbjct: 332 RTRTGRVATRKAYEHLGYSY 351


>gi|330683934|gb|EGG95701.1| Holliday junction DNA helicase RuvB [Staphylococcus epidermidis
           VCU121]
          Length = 334

 Score =  352 bits (903), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 170/328 (51%), Positives = 232/328 (70%), Gaps = 2/328 (0%)

Query: 2   MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD E ++ ++   E++D  L LRP  L+++ GQ    SNL+VFI+AAK R E LDHVL  
Sbjct: 1   MD-ERMVDQSAHNEESDFELSLRPTKLKQYIGQSSIKSNLEVFIKAAKLREEPLDHVLLY 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTL+ ++A E+ VN R+ SGP + + GDLAA+L+ L+  DVLFIDEIHRLS +
Sbjct: 60  GPPGLGKTTLSNIIANEMDVNIRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSV 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDF LD+++G+G  ARS++I+L  FTL+ ATTR G LT PL+DRFG+ +RL
Sbjct: 120 VEEVLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATTRAGSLTGPLRDRFGVHLRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y   DLK I+ R A++ G  + +E+A E+A RSRGTPR+A RLL+RVRDF +V     
Sbjct: 180 EYYNEADLKEIIIRTAEVLGTGIDEESAIELAKRSRGTPRVANRLLKRVRDFQQVNEDDQ 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I  E    AL  L +D  G D +D + +  I   + GGPVG++TI+  + E R  IED+ 
Sbjct: 240 IYIETTKRALKLLQVDDYGLDYIDHKMMNCILNQYKGGPVGLDTIAVSIGEERVTIEDVY 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
           EP++IQ+GF++RTPRGR   P+A +H G
Sbjct: 300 EPFLIQKGFLERTPRGRKATPLAHEHFG 327


>gi|239616615|ref|YP_002939937.1| Holliday junction DNA helicase RuvB [Kosmotoga olearia TBF 19.5.1]
 gi|259495671|sp|C5CIU4|RUVB_KOSOT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|239505446|gb|ACR78933.1| Holliday junction DNA helicase RuvB [Kosmotoga olearia TBF 19.5.1]
          Length = 342

 Score =  352 bits (903), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 169/327 (51%), Positives = 225/327 (68%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
            E  L+     E+     LRP+ L+E+ GQ      LK+ IEAAK R EALDHVL  GPP
Sbjct: 2   EERFLTPKDIGEEQLTRTLRPQRLDEYIGQRNVKQRLKISIEAAKVRNEALDHVLLAGPP 61

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++A E+G N   TSGPVI K GDLAA+LT+LE+ DVLFIDEIHRL   +EE
Sbjct: 62  GLGKTTLAHIIANEMGTNIYVTSGPVIEKQGDLAAILTSLEEGDVLFIDEIHRLGRAIEE 121

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILY AMEDF+LD+M+G+GPSARS++++L+ FTL+ ATTR GL+  PL++RFG+ + L FY
Sbjct: 122 ILYSAMEDFKLDIMIGKGPSARSIRLDLAPFTLVGATTRSGLIGAPLRNRFGMVLELEFY 181

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
             ++LK I++R A+L  + + DEAA  +A RSRGTPRIA RLLRRVRD A V     I  
Sbjct: 182 TPDELKQIIKRSARLLEVKIDDEAAELLASRSRGTPRIANRLLRRVRDLATVDGTGKILS 241

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           +  + A+  + ID  G D +D + L ++  N+ GGP G++ I+A +    D I ++ EPY
Sbjct: 242 KTVEDAMKIMGIDAEGLDDMDRKILRVLIENYEGGPAGLKAIAASVGIEADTISEVYEPY 301

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGID 330
           ++Q GFI RT RGR+    A++HLGI 
Sbjct: 302 LLQSGFIVRTNRGRMATKKAYRHLGIA 328


>gi|312866997|ref|ZP_07727208.1| Holliday junction DNA helicase RuvB [Streptococcus parasanguinis
           F0405]
 gi|311097479|gb|EFQ55712.1| Holliday junction DNA helicase RuvB [Streptococcus parasanguinis
           F0405]
          Length = 332

 Score =  352 bits (903), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 173/320 (54%), Positives = 227/320 (70%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +  E+A    LRP+ L E+ GQ +    LK+FIEAAK R EALDHVL  GPPGLGKTT+A
Sbjct: 10  MGDEEAVERTLRPQYLHEYIGQDKVKDQLKIFIEAAKLRDEALDHVLLFGPPGLGKTTMA 69

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            V+A ELGVN + TSGPVI KAGDL A+L +LE  DVLFIDEIHRL + VEE+LY AMED
Sbjct: 70  FVIANELGVNLKQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMED 129

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F +D+M+G G ++RSV ++L  FTLI ATTR G+L+NPL+ RFGI   + +YE +DL  I
Sbjct: 130 FYIDIMIGAGETSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYEQDDLTEI 189

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           V+R A++  + +T EAA E+++RSRGTPRIA RLL+RVRDFA++     I   I D AL 
Sbjct: 190 VERTAEIFEMEITHEAAEELSLRSRGTPRIANRLLKRVRDFAQIMGNGLIDDTITDKALS 249

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L +D  G D +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GFI 
Sbjct: 250 MLDVDHEGLDYVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIM 309

Query: 312 RTPRGRLLMPIAWQHLGIDI 331
           RT  GR+    A++HLG   
Sbjct: 310 RTRTGRVATRKAYEHLGYPY 329


>gi|322410848|gb|EFY01756.1| Holliday junction DNA helicase RuvB [Streptococcus dysgalactiae
           subsp. dysgalactiae ATCC 27957]
          Length = 332

 Score =  352 bits (903), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 169/328 (51%), Positives = 227/328 (69%), Gaps = 1/328 (0%)

Query: 6   GLLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
            +L  +V   E+     LRP+ L E+ GQ +    L +FIEAAK R E+LDHVL  GPPG
Sbjct: 3   RILDNDVMGDEELVERTLRPKYLREYIGQDKVKEQLNIFIEAAKLRDESLDHVLLFGPPG 62

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTT+A V+A ELGVN + TSGP I KAGDL A+L +LE  DVLFIDEIHRL + VEE+
Sbjct: 63  LGKTTMAFVIANELGVNLKQTSGPAIEKAGDLVAILNDLEPGDVLFIDEIHRLPMAVEEV 122

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LY AMEDF +D+M+G G ++RSV ++L  FTLI ATTR G+L+NPL+ RFGI   + +Y+
Sbjct: 123 LYSAMEDFYIDIMIGAGDTSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYQ 182

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
             DL  I++R A +  + +  EAA E+A RSRGTPRIA RLL+RVRD+A++     IT +
Sbjct: 183 EADLTEIIERTANIFDMEIVHEAAQELACRSRGTPRIANRLLKRVRDYAQIVGDGVITAQ 242

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           I D AL  L +D+ G D +D + L  +   + GGPVG+ T+S  ++E RD +ED+ EPY+
Sbjct: 243 ITDKALTMLDVDREGLDYVDQKILRTMIEMYQGGPVGLGTLSVNIAEERDTVEDMYEPYL 302

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           IQ+GF+ RT  GR++   A++HLG   P
Sbjct: 303 IQKGFLMRTRTGRVVTEKAYRHLGYPYP 330


>gi|296875469|ref|ZP_06899542.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           parasanguinis ATCC 15912]
 gi|296433536|gb|EFH19310.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           parasanguinis ATCC 15912]
          Length = 332

 Score =  352 bits (903), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 174/320 (54%), Positives = 227/320 (70%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +  E+A    LRP+ L E+ GQ +    LK+FIEAAK R EALDHVL  GPPGLGKTT+A
Sbjct: 10  MGDEEAVERTLRPQYLHEYIGQDKVKDQLKIFIEAAKLRDEALDHVLLFGPPGLGKTTMA 69

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            V+A ELGVN + TSGPVI KAGDL A+L +LE  DVLFIDEIHRL + VEE+LY AMED
Sbjct: 70  FVIANELGVNLKQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMED 129

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F +D+M+G G S+RSV ++L  FTLI ATTR G+L+NPL+ RFGI   + +YE +DL  I
Sbjct: 130 FYIDIMIGAGESSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYEQDDLTEI 189

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           V+R A++  + +T EAA E+++RSRGTPRIA RLL+RVRDFA++     I   I D AL 
Sbjct: 190 VERTAEIFEMEITHEAAEELSLRSRGTPRIANRLLKRVRDFAQIMGDGLIDDSITDKALS 249

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L +D  G D +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GFI 
Sbjct: 250 MLDVDHEGLDYVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIM 309

Query: 312 RTPRGRLLMPIAWQHLGIDI 331
           RT  GR+    A++HLG   
Sbjct: 310 RTRTGRVATRKAYEHLGYPY 329


>gi|51473577|ref|YP_067334.1| Holliday junction DNA helicase B [Rickettsia typhi str. Wilmington]
 gi|68715433|sp|Q68WZ0|RUVB_RICTY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|51459889|gb|AAU03852.1| Holliday junction DNA helicase RuvB [Rickettsia typhi str.
           Wilmington]
          Length = 342

 Score =  352 bits (903), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 194/329 (58%), Positives = 249/329 (75%), Gaps = 1/329 (0%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            +LS   S+ D ++  +RP  L+EF GQ +   NL VFI+AAK+R E LDH LF GPPGL
Sbjct: 3   NILSPEKSENDQELP-IRPSYLQEFVGQQQIKENLLVFIKAAKSRNEHLDHTLFYGPPGL 61

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLA++++ E+G NF+ST+GP I KA DLAA+LTNLE  DVLFIDEIHRL+ +VEEIL
Sbjct: 62  GKTTLAKIISNEIGGNFKSTAGPAIIKAADLAAILTNLEKNDVLFIDEIHRLNTLVEEIL 121

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           Y AMEDF+LD+++GEG +ARSVKI L +FTLI ATTR G+L+N L+DRFGIP+RLNFY  
Sbjct: 122 YSAMEDFELDIIIGEGSAARSVKITLPKFTLIGATTRFGMLSNSLRDRFGIPMRLNFYNT 181

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           E+LK ++ R +KL  + +TD  + EIA RSRGTPRIA RLLRR+RDFA V     I +EI
Sbjct: 182 EELKQVLNRASKLLDIDLTDSGSEEIAKRSRGTPRIALRLLRRIRDFAVVDGKLRIDKEI 241

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
            D  L RL +D +G D  D RYL  IA N+ GGPVGIETI+A LSE RD +E+ IEPY+I
Sbjct: 242 CDFGLKRLTVDSIGLDSNDYRYLKFIADNYHGGPVGIETIAAALSEQRDELEETIEPYLI 301

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           + G ++RTPRGR++   A++HL + IP++
Sbjct: 302 KIGLVKRTPRGRVITIAAFEHLKMPIPNK 330


>gi|223932360|ref|ZP_03624363.1| Holliday junction DNA helicase RuvB [Streptococcus suis 89/1591]
 gi|223899041|gb|EEF65399.1| Holliday junction DNA helicase RuvB [Streptococcus suis 89/1591]
          Length = 333

 Score =  352 bits (903), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 175/333 (52%), Positives = 226/333 (67%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M    L    +  E+     LRP+ L E+ GQ +    LK+FIEAAK R EALDH L  G
Sbjct: 1   MTNRILDMEQMQDEEYVERTLRPQKLNEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTT+A V+A ELGVN + TSGPVI KAGDL ALL +LE  DVLFIDEIHR+ + V
Sbjct: 61  PPGLGKTTMAFVIANELGVNIKQTSGPVIEKAGDLVALLNDLEPGDVLFIDEIHRMPMAV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILY AMEDF +D+M+G G ++RSV + L  FTLI ATTR G+L+NPL+ RFGI   + 
Sbjct: 121 EEILYSAMEDFYIDIMIGAGEASRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHME 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +YE+ DL  IV+R A +  + +T EAA E+A RSRGTPRIA RLL+RVRDFA++     I
Sbjct: 181 YYELADLTEIVERTADIFDMEITHEAAIELARRSRGTPRIANRLLKRVRDFAQIMGDGLI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
              I D AL  L +D+ G D +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ E
Sbjct: 241 DDNITDKALTMLDVDREGLDYVDQKILRTMIEMYGGGPVGLNTLSVNIAEERETVEDMYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           PY+IQQGF+ RT  GR+    A++HLG     +
Sbjct: 301 PYLIQQGFLMRTRTGRVATAKAYEHLGYPYTEK 333


>gi|187250916|ref|YP_001875398.1| Holliday junction resolvasome helicase subunit [Elusimicrobium
           minutum Pei191]
 gi|186971076|gb|ACC98061.1| Holliday junction resolvasome, helicase subunit [Elusimicrobium
           minutum Pei191]
          Length = 340

 Score =  352 bits (903), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 172/336 (51%), Positives = 225/336 (66%), Gaps = 3/336 (0%)

Query: 1   MMDREGLLSRNVSQEDAD--ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M     +L  N S E+ +   + LRP +L EF GQ     NL VF+ AAK R EALDH L
Sbjct: 1   MSSYNEVLDLNPSSEEKNGLDAALRPSSLREFVGQASLKENLHVFLTAAKKRGEALDHTL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLT-NLEDRDVLFIDEIHRL 117
           F  PPGLGKTTLA ++A+E+GVN ++TSGPV+++ GDLAA+LT  + + D+LF+DEIHRL
Sbjct: 61  FYSPPGLGKTTLANILAKEMGVNIKTTSGPVLSRPGDLAAMLTTEISEGDILFVDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           +  VEE LYPAMEDF   +  G+G  + ++K+++ +FTL+ ATTR GLLT PL+DRFGI 
Sbjct: 121 NPAVEEALYPAMEDFNFFINTGKGAGSTTLKLSVPKFTLVGATTRSGLLTGPLRDRFGIV 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
             LNFYEI ++  I++R AKL  +         +A RSRGTPRIA RLLRR RDFA+V  
Sbjct: 181 FNLNFYEITEIADILERSAKLLNIEADRRGLEALAARSRGTPRIANRLLRRARDFAQVKG 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
              IT +IAD A+  L ID  G D +D R L  +   FGGGPVG+E ++  +SE  D + 
Sbjct: 241 DGVITCDIADIAMQSLDIDAEGLDTMDKRILEALIEKFGGGPVGVENLAIAVSESIDTLT 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           D+IEPY+I+ GFI RTPRGR+    A+ HLG   P 
Sbjct: 301 DVIEPYLIKAGFIARTPRGRVATKKAYDHLGRKSPE 336


>gi|239637554|ref|ZP_04678526.1| holliday junction DNA helicase RuvB [Staphylococcus warneri L37603]
 gi|239596772|gb|EEQ79297.1| holliday junction DNA helicase RuvB [Staphylococcus warneri L37603]
          Length = 334

 Score =  352 bits (903), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 170/328 (51%), Positives = 232/328 (70%), Gaps = 2/328 (0%)

Query: 2   MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD E ++ ++   E++D  L LRP  L+++ GQ    SNL+VFI+AAK R E LDHVL  
Sbjct: 1   MD-ERMVDQSAHNEESDFELSLRPTKLKQYIGQSSIKSNLEVFIKAAKLREEPLDHVLLY 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTL+ ++A E+ VN R+ SGP + + GDLAA+L+ L+  DVLFIDEIHRLS +
Sbjct: 60  GPPGLGKTTLSNIIANEMDVNIRTVSGPSLERPGDLAAILSGLKPGDVLFIDEIHRLSSV 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDF LD+++G+G  ARS++I+L  FTL+ ATTR G LT PL+DRFG+ +RL
Sbjct: 120 VEEVLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATTRAGSLTGPLRDRFGVHLRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y   DLK I+ R A++ G  + +E+A E+A RSRGTPR+A RLL+RVRDF +V     
Sbjct: 180 EYYNEADLKEIIIRTAEVLGTDIDEESAIELAKRSRGTPRVANRLLKRVRDFQQVNEDDQ 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I  E    AL  L +D  G D +D + +  I   + GGPVG++TI+  + E R  IED+ 
Sbjct: 240 IYIETTKRALKLLQVDDYGLDYIDHKMMNCILNQYKGGPVGLDTIAVSIGEERITIEDVY 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
           EP++IQ+GF++RTPRGR   P+A +H G
Sbjct: 300 EPFLIQKGFLERTPRGRKATPLAHEHFG 327


>gi|27468242|ref|NP_764879.1| Holliday junction DNA helicase B [Staphylococcus epidermidis ATCC
           12228]
 gi|57867144|ref|YP_188780.1| Holliday junction DNA helicase RuvB [Staphylococcus epidermidis
           RP62A]
 gi|251811046|ref|ZP_04825519.1| Holliday junction DNA helicase B [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|282875934|ref|ZP_06284801.1| Holliday junction DNA helicase RuvB [Staphylococcus epidermidis
           SK135]
 gi|293366402|ref|ZP_06613081.1| crossover junction endoribonuclease subunit B [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|33301649|sp|Q8CS91|RUVB_STAES RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|71153738|sp|Q5HNR0|RUVB_STAEQ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|27315788|gb|AAO04923.1|AE016748_157 holliday junction DNA helicase [Staphylococcus epidermidis ATCC
           12228]
 gi|57637802|gb|AAW54590.1| Holliday junction DNA helicase RuvB [Staphylococcus epidermidis
           RP62A]
 gi|251805422|gb|EES58079.1| Holliday junction DNA helicase B [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|281294959|gb|EFA87486.1| Holliday junction DNA helicase RuvB [Staphylococcus epidermidis
           SK135]
 gi|291319527|gb|EFE59894.1| crossover junction endoribonuclease subunit B [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|329724653|gb|EGG61159.1| Holliday junction DNA helicase RuvB [Staphylococcus epidermidis
           VCU144]
 gi|329733790|gb|EGG70116.1| Holliday junction DNA helicase RuvB [Staphylococcus epidermidis
           VCU045]
 gi|329737203|gb|EGG73457.1| Holliday junction DNA helicase RuvB [Staphylococcus epidermidis
           VCU028]
          Length = 334

 Score =  352 bits (903), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 170/334 (50%), Positives = 231/334 (69%), Gaps = 2/334 (0%)

Query: 2   MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD+  ++ +    ED D+ L LRP  L+++ GQ    SNL+VFI+AAK R E LDHVL  
Sbjct: 1   MDK-RMVDQEFHNEDTDLELSLRPTQLKQYIGQSSIKSNLEVFIKAAKLRQEPLDHVLLF 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTL+ ++A E+ VN R+ SGP + + GDLAA+L+ L+  DVLFIDEIHRLS +
Sbjct: 60  GPPGLGKTTLSNIIANEMEVNIRTISGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSV 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDF LD+++G+G  ARS++I+L  FTL+ ATTR G LT PL+DRFG+ +RL
Sbjct: 120 VEEVLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATTRAGSLTGPLRDRFGVHLRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y   DLK I+ R A++ G  +  E+A E+A RSRGTPRIA RLL+RVRDF +V     
Sbjct: 180 EYYNENDLKEIITRTAEVLGTDIDKESALELARRSRGTPRIANRLLKRVRDFQQVNEDDQ 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I  E    AL  L +D+ G D +D + +  I   + GGPVG++TI+  + E R  IED+ 
Sbjct: 240 IYIETTKRALQLLQVDQHGLDYIDHKMMNCIINQYNGGPVGLDTIAVSIGEERVTIEDVY 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           EP++IQ+GF++RTPRGR    +A++H       R
Sbjct: 300 EPFLIQRGFLERTPRGRKATALAYEHFNTTNEKR 333


>gi|170017581|ref|YP_001728500.1| Holliday junction DNA helicase RuvB [Leuconostoc citreum KM20]
 gi|169804438|gb|ACA83056.1| Holliday junction DNA helicase RuvB [Leuconostoc citreum KM20]
          Length = 352

 Score =  352 bits (903), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 166/320 (51%), Positives = 218/320 (68%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E  D   LRP+ L E+ GQ      L V+I AAK R EALDHVL  GPPGLGKTTLA ++
Sbjct: 32  EQHDELSLRPQFLREYIGQAALKEELSVYISAAKQREEALDHVLLFGPPGLGKTTLAMII 91

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A E+GV+ ++TSGP I K GDL ALL  LE  D+LFIDEIHRL   VEEI+Y AMED+ +
Sbjct: 92  ANEMGVHIKTTSGPAIEKPGDLVALLNELEPGDILFIDEIHRLPTNVEEIMYSAMEDYFV 151

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D+MVG+GP+AR+V   L  FTLI ATTR G+L+ PL+DRFGI   +++Y  E+L+ IV R
Sbjct: 152 DIMVGQGPTARAVHFPLPPFTLIGATTRPGMLSKPLRDRFGIMSAMSYYTPEELQEIVVR 211

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            + +    +  E A EIA+RSRGTPRIA RLL+RVRDFA+V     I R I D AL +L 
Sbjct: 212 SSDIFKAPIKPEGAYEIALRSRGTPRIANRLLKRVRDFAQVQGKAAIDRVIVDIALDKLR 271

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D  G D+ D + L  +   + GGPVG+ T++A + E  + +E ++EPY++Q GF+QRTP
Sbjct: 272 VDNRGLDETDHKLLDTMITYYQGGPVGLNTLAANIGEEAETLESMVEPYLLQIGFLQRTP 331

Query: 315 RGRLLMPIAWQHLGIDIPHR 334
           RGR++   A+ HL I    +
Sbjct: 332 RGRVVTEAAYAHLNIPYQRK 351


>gi|314933805|ref|ZP_07841170.1| holliday junction DNA helicase RuvB [Staphylococcus caprae C87]
 gi|313653955|gb|EFS17712.1| holliday junction DNA helicase RuvB [Staphylococcus caprae C87]
          Length = 334

 Score =  352 bits (903), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 170/328 (51%), Positives = 228/328 (69%), Gaps = 2/328 (0%)

Query: 2   MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD+  ++ +    ED+D  L LRP  L+++ GQ    SNL+VFI+AAK R E LDHVL  
Sbjct: 1   MDK-RMVDQQFHNEDSDFELSLRPTKLKQYIGQTSIKSNLEVFIKAAKLREEPLDHVLLF 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTL+ ++A E+ VN R+ SGP + + GDLAA+L+ L+  DVLFIDEIHRLS  
Sbjct: 60  GPPGLGKTTLSNIIANEMEVNIRTISGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSA 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDF LD+++G+G  ARS++I+L  FTL+ ATTR G LT PL+DRFG+ +RL
Sbjct: 120 VEEVLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATTRAGSLTGPLRDRFGVHLRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y   DLK I+ R A + G  + +E+A E+A RSRGTPR+A RLL+RVRDF +V     
Sbjct: 180 EYYNENDLKEIITRTADVLGTGIDEESALELARRSRGTPRVANRLLKRVRDFQQVNEDDQ 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I  E    AL  L +DK G D +D + +  I   + GGPVG++TI+  + E R  IED+ 
Sbjct: 240 IYIETTKRALQLLQVDKEGLDYIDHKMMNCIINQYNGGPVGLDTIAVSIGEERITIEDVY 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
           EP++IQ+GF++RTPRGR   P A+ H  
Sbjct: 300 EPFLIQKGFLERTPRGRKATPFAYVHFN 327


>gi|330831901|ref|YP_004400726.1| Holliday junction DNA helicase subunit B [Streptococcus suis ST3]
 gi|329306124|gb|AEB80540.1| Holliday junction DNA helicase, subunit B [Streptococcus suis ST3]
          Length = 333

 Score =  352 bits (902), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 175/333 (52%), Positives = 225/333 (67%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M    L    +  E+     LRP+ L E+ GQ +    LK+FIEAAK R EALDH L  G
Sbjct: 1   MTNRILDMEQMQDEEYVERTLRPQKLNEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTT+A V+A ELGVN + TSGPVI KAGDL ALL +LE  DVLFIDEIHR+ + V
Sbjct: 61  PPGLGKTTMAFVIANELGVNIKQTSGPVIEKAGDLVALLNDLEPGDVLFIDEIHRMPMAV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILY AMEDF +D+M+G G + RSV + L  FTLI ATTR G+L+NPL+ RFGI   + 
Sbjct: 121 EEILYSAMEDFYIDIMIGAGEAGRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHME 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +YE+ DL  IV+R A +  + +T EAA E+A RSRGTPRIA RLL+RVRDFA++     I
Sbjct: 181 YYELADLTEIVERTADIFDMEITHEAAIELARRSRGTPRIANRLLKRVRDFAQIMGDGLI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
              I D AL  L +D+ G D +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ E
Sbjct: 241 DDNITDKALTMLDVDREGLDYVDQKILRTMIEMYGGGPVGLNTLSVNIAEERETVEDMYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           PY+IQQGF+ RT  GR+    A++HLG     +
Sbjct: 301 PYLIQQGFLMRTRTGRVATAKAYEHLGYPYTEK 333


>gi|227894653|ref|ZP_04012458.1| Holliday junction DNA helicase B [Lactobacillus ultunensis DSM
           16047]
 gi|227863548|gb|EEJ70969.1| Holliday junction DNA helicase B [Lactobacillus ultunensis DSM
           16047]
          Length = 341

 Score =  352 bits (902), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 162/313 (51%), Positives = 219/313 (69%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            LRP+TL ++ GQ      + ++I+AAK R EALDHVL  GPPGLGKTTLA V+A ELGV
Sbjct: 27  SLRPQTLSQYLGQERVKKEMSIYIKAAKQRDEALDHVLLYGPPGLGKTTLAFVIANELGV 86

Query: 81  NFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           + +STSGP I KAGDL ALL++L+  DVLFIDEIHRL+  VEE+LY AMED+ +D+++GE
Sbjct: 87  HLKSTSGPAIEKAGDLVALLSDLDPGDVLFIDEIHRLAKPVEEVLYSAMEDYYIDIVIGE 146

Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
           G +  +V + L  FTLI ATT  G L+ PL+DRFGI   + +Y +++L+ IVQR + +  
Sbjct: 147 GQTTHAVHVPLPPFTLIGATTLAGQLSAPLRDRFGIVEHMQYYNVDELEKIVQRSSDVFH 206

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGF 260
            ++  EAA E+A RSRGTPR+A RLL+RVRDFAEV   +TI+    + AL +L +D  G 
Sbjct: 207 TSIAPEAAHELARRSRGTPRVANRLLKRVRDFAEVKGERTISLATTENALKQLQVDDEGL 266

Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320
           DQ D + L  +   + GGPVGI T++A + E  + IE L EPY++Q GFI  TPRGR++ 
Sbjct: 267 DQTDRKLLRTMIEGYNGGPVGIRTLAANIGEDMETIESLYEPYLLQHGFILLTPRGRMVT 326

Query: 321 PIAWQHLGIDIPH 333
             A+  LG+ +P 
Sbjct: 327 DKAYLQLGLPVPD 339


>gi|242242913|ref|ZP_04797358.1| Holliday junction DNA helicase B [Staphylococcus epidermidis
           W23144]
 gi|242233628|gb|EES35940.1| Holliday junction DNA helicase B [Staphylococcus epidermidis
           W23144]
          Length = 334

 Score =  352 bits (902), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 169/334 (50%), Positives = 231/334 (69%), Gaps = 2/334 (0%)

Query: 2   MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD+  ++ +    ED D+ L LRP  L+++ GQ    SNL+VFI+AAK R E LDHVL  
Sbjct: 1   MDK-RMVDQEFHNEDTDLELSLRPTQLKQYIGQSSIKSNLEVFIKAAKLRQEPLDHVLLF 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTL+ ++A E+ VN R+ SGP + + GDLAA+L+ L+  DVLFIDEIHRLS +
Sbjct: 60  GPPGLGKTTLSNIIANEMDVNIRTISGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSV 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDF LD+++G+G  ARS++++L  FTL+ ATTR G LT PL+DRFG+ +RL
Sbjct: 120 VEEVLYPAMEDFFLDIIIGKGDEARSIRLDLPPFTLVGATTRAGSLTGPLRDRFGVHLRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y   DLK I+ R A++ G  +  E+A E+A RSRGTPRIA RLL+RVRDF +V     
Sbjct: 180 EYYNENDLKEIITRTAEVLGTDIDKESALELARRSRGTPRIANRLLKRVRDFQQVNEDDQ 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I  E    AL  L +D+ G D +D + +  I   + GGPVG++TI+  + E R  IED+ 
Sbjct: 240 IYIETTKRALQLLQVDQQGLDYIDHKMMNCIINQYNGGPVGLDTIAVSIGEERVTIEDVY 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           EP++IQ+GF++RTPRGR    +A++H       R
Sbjct: 300 EPFLIQKGFLERTPRGRKATALAFEHFNTTNEKR 333


>gi|222151526|ref|YP_002560682.1| holliday junction DNA helicase RuvB [Macrococcus caseolyticus
           JCSC5402]
 gi|254767431|sp|B9E718|RUVB_MACCJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|222120651|dbj|BAH17986.1| holliday junction DNA helicase RuvB [Macrococcus caseolyticus
           JCSC5402]
          Length = 337

 Score =  352 bits (902), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 168/332 (50%), Positives = 233/332 (70%), Gaps = 3/332 (0%)

Query: 2   MDREGLLSRNVSQ--EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           MD + ++  N+    E  +   LRP  L ++ GQ +   NL VFI+AAK R EALDHVL 
Sbjct: 1   MD-DRIVDNNLIDHYEVEEELSLRPERLSQYIGQHKIKENLDVFIQAAKLRNEALDHVLL 59

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A EL VN + TSGP I + GDLAA+L++L   DVLFIDEIHR+S 
Sbjct: 60  YGPPGLGKTTLANIIAHELDVNIKITSGPSIERPGDLAAILSSLNAGDVLFIDEIHRISR 119

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMEDF LD++VG+G  ARS++I+L  FTL+ ATTR G L+ PL+DRFG+ +R
Sbjct: 120 VVEEVLYPAMEDFCLDIVVGKGEEARSIRIDLPPFTLVGATTRAGSLSAPLRDRFGVHLR 179

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L++Y+++DL  IV R A +  +++  ++  EIA+RSRGTPRIA RLL+RVRDFA+V +  
Sbjct: 180 LDYYDMKDLSHIVSRTADVFEVSIDAQSVQEIALRSRGTPRIANRLLKRVRDFAQVRNNG 239

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  E+   AL  L +D+ G D +D + L  I   + GGPVG++TI+  + E R  +ED+
Sbjct: 240 LIDIEMTTQALNLLQVDRYGLDHIDHKILRAIIERYNGGPVGLDTIAVSIGEERITLEDV 299

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
            EPY+IQ+G ++RT RGR+    A++HL +  
Sbjct: 300 YEPYLIQKGLLERTARGRVATIHAYEHLNVPY 331


>gi|146317710|ref|YP_001197422.1| Holliday junction DNA helicase RuvB [Streptococcus suis 05ZYH33]
 gi|146319898|ref|YP_001199609.1| Holliday junction DNA helicase RuvB [Streptococcus suis 98HAH33]
 gi|253750965|ref|YP_003024106.1| Holliday junction DNA helicase, subunit B [Streptococcus suis SC84]
 gi|253752865|ref|YP_003026005.1| Holliday junction DNA helicase, subunit B [Streptococcus suis P1/7]
 gi|253754690|ref|YP_003027830.1| Holliday junction DNA helicase, subunit B [Streptococcus suis
           BM407]
 gi|172045570|sp|A4VSD3|RUVB_STRSY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|172045585|sp|A4VYM0|RUVB_STRS2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|145688516|gb|ABP89022.1| Holliday junction resolvasome, helicase subunit [Streptococcus suis
           05ZYH33]
 gi|145690704|gb|ABP91209.1| Holliday junction resolvasome, helicase subunit [Streptococcus suis
           98HAH33]
 gi|251815254|emb|CAZ50819.1| Holliday junction DNA helicase, subunit B [Streptococcus suis SC84]
 gi|251817154|emb|CAZ54875.1| Holliday junction DNA helicase, subunit B [Streptococcus suis
           BM407]
 gi|251819110|emb|CAR44174.1| Holliday junction DNA helicase, subunit B [Streptococcus suis P1/7]
 gi|292557509|gb|ADE30510.1| Holliday junction DNA helicase RuvB [Streptococcus suis GZ1]
 gi|319757217|gb|ADV69159.1| Holliday junction DNA helicase RuvB [Streptococcus suis JS14]
          Length = 333

 Score =  352 bits (902), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 175/333 (52%), Positives = 226/333 (67%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M    L    +  E+     LRP+ L E+ GQ +    LK+FIEAAK R EALDH L  G
Sbjct: 1   MTNRILDMEQMQDEEYVERTLRPQKLNEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTT+A V+A ELGVN + TSGPVI KAGDL ALL +LE  DVLFIDEIHR+ + V
Sbjct: 61  PPGLGKTTMAFVIANELGVNIKQTSGPVIEKAGDLVALLNDLEPGDVLFIDEIHRMPMAV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILY AMEDF +D+M+G G ++RSV + L  FTLI ATTR G+L+NPL+ RFGI   + 
Sbjct: 121 EEILYSAMEDFYIDIMIGAGEASRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHME 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +YE+ DL  IV+R A +  + +T EAA E+A RSRGTPRIA RLL+RVRDFA++     I
Sbjct: 181 YYELADLTEIVERTADIFDMEITHEAAIELARRSRGTPRIANRLLKRVRDFAQIMGDGLI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
              I D AL  L +D+ G D +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ E
Sbjct: 241 DDSITDKALTMLDVDREGLDYVDQKILRTMIEMYGGGPVGLNTLSVNIAEERETVEDMYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           PY+IQQGF+ RT  GR+    A++HLG     +
Sbjct: 301 PYLIQQGFLMRTRTGRVATAKAYEHLGYPYTEK 333


>gi|113475089|ref|YP_721150.1| Holliday junction DNA helicase RuvB [Trichodesmium erythraeum
           IMS101]
 gi|123161082|sp|Q115Z7|RUVB_TRIEI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|110166137|gb|ABG50677.1| Holliday junction DNA helicase subunit RuvB [Trichodesmium
           erythraeum IMS101]
          Length = 386

 Score =  352 bits (902), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 159/325 (48%), Positives = 218/325 (67%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           S     ++ +   +RP+ L+E+ GQ +    L + I AAK+R E+LDH+L  GPPGLGKT
Sbjct: 55  SAAEKSDNQNEEKIRPQRLDEYIGQKDLKEVLNIAISAAKSRKESLDHLLLYGPPGLGKT 114

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           T++ ++A E+ VN + T+ P I K  D+  LL  L+  D+LFIDEIHRLS + EEILYPA
Sbjct: 115 TMSLILAAEMEVNCKITTAPAIEKPRDIVGLLVGLQKGDILFIDEIHRLSKMTEEILYPA 174

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           MEDF+LD+ VG+G S+++  I L  FTL+ ATT+VG LT+PL+DRFGI  RL FYE+++L
Sbjct: 175 MEDFRLDITVGQGKSSKTRSIPLKPFTLVGATTKVGSLTSPLRDRFGIIQRLRFYEVDEL 234

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             I+ R AK+    +T++ A E+A RSRGTPRIA RLLRRVRD++EV     I  EIA  
Sbjct: 235 SLIIIRAAKVLNTDITEDGAEEVARRSRGTPRIANRLLRRVRDYSEVKKLTPINAEIAGE 294

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL    +D +G D  D   L  +  N+ GGP G+ET++A   E    IE++ EPY++Q G
Sbjct: 295 ALELFNVDPLGLDWTDRNLLRTMIENYNGGPAGLETMAAATGEDAQTIEEVYEPYLMQIG 354

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIPH 333
           F+QRTPRGR++    W+HLG   P 
Sbjct: 355 FMQRTPRGRVVTAAGWRHLGFSPPD 379


>gi|302023148|ref|ZP_07248359.1| Holliday junction DNA helicase RuvB [Streptococcus suis 05HAS68]
          Length = 323

 Score =  352 bits (902), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 173/323 (53%), Positives = 224/323 (69%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +  E+     LRP+ L E+ GQ +    LK+FIEAAK R EALDH L  GPPGLGKTT+A
Sbjct: 1   MQDEEYVERTLRPQKLNEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMA 60

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            V+A ELGVN + TSGPVI KAGDL ALL +LE  DVLFIDEIHR+ + VEEILY AMED
Sbjct: 61  FVIANELGVNIKQTSGPVIEKAGDLVALLNDLEPGDVLFIDEIHRMPMAVEEILYSAMED 120

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F +D+M+G G ++RSV + L  FTLI ATTR G+L+NPL+ RFGI   + +YE+ DL  I
Sbjct: 121 FYIDIMIGAGEASRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYELADLTEI 180

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           V+R A +  + +T EAA E+A RSRGTPRIA RLL+RVRDFA++     I   I D AL 
Sbjct: 181 VERTADIFDMEITHEAAIELARRSRGTPRIANRLLKRVRDFAQIMGDGLIDDNITDKALT 240

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L +D+ G D +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQQGF+ 
Sbjct: 241 MLDVDREGLDYVDQKILRTMIEMYGGGPVGLNTLSVNIAEERETVEDMYEPYLIQQGFLM 300

Query: 312 RTPRGRLLMPIAWQHLGIDIPHR 334
           RT  GR+    A++HLG     +
Sbjct: 301 RTRTGRVATAKAYEHLGYPYTEK 323


>gi|323126299|gb|ADX23596.1| Holliday junction DNA helicase RuvB [Streptococcus dysgalactiae
           subsp. equisimilis ATCC 12394]
          Length = 332

 Score =  352 bits (902), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 169/330 (51%), Positives = 227/330 (68%), Gaps = 1/330 (0%)

Query: 6   GLLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
            +L  +V   E+     LRP+ L E+ GQ +    L +FIEAAK R E+LDHV+  GPPG
Sbjct: 3   RILDNDVMGDEELVERTLRPQYLREYIGQDKVKEQLTIFIEAAKLRDESLDHVMLFGPPG 62

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTT+A V+A ELGVN + TSGP I KAGDL A+L +LE  DVLFIDEIHRL + VEE+
Sbjct: 63  LGKTTMAFVIANELGVNLKQTSGPAIEKAGDLVAILNDLEPGDVLFIDEIHRLPMAVEEV 122

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LY AMEDF +D+M+G G ++RSV ++L  FTLI ATTR G+L+NPL+ RFGI   + +Y+
Sbjct: 123 LYSAMEDFYIDIMIGAGDTSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYQ 182

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
             DL  IV+R A +  + +  EAA E+A RSRGTPRIA RLL+RVRD+A++     IT +
Sbjct: 183 EADLTEIVERTADIFDMEIVHEAAQELACRSRGTPRIANRLLKRVRDYAQIVGDGVITAQ 242

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           I D AL  L +D+ G D +D + L  +   + GGPVG+ T+S  ++E RD +ED+ EPY+
Sbjct: 243 ITDKALTMLDVDREGLDYVDQKILRTMIEMYQGGPVGLGTLSVNIAEERDTVEDMYEPYL 302

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           IQ+GF+ RT  GR+    A++HLG   P +
Sbjct: 303 IQKGFLMRTRTGRVATEKAYRHLGYPYPSK 332


>gi|254419031|ref|ZP_05032755.1| Holliday junction DNA helicase RuvB [Brevundimonas sp. BAL3]
 gi|196185208|gb|EDX80184.1| Holliday junction DNA helicase RuvB [Brevundimonas sp. BAL3]
          Length = 343

 Score =  351 bits (901), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 204/325 (62%), Positives = 255/325 (78%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            ++S      +A    LRP+TL EF GQ +A  NLKVFI+AA+ RAEALDHVL  GPPGL
Sbjct: 3   RIISPEAETGEAFDRALRPQTLSEFVGQSQAKGNLKVFIDAARGRAEALDHVLLFGPPGL 62

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLAQ+VARELGV FR+TSGP++AKAGDLAA+LTNLE RDVLFIDEIHRLS  VEEIL
Sbjct: 63  GKTTLAQIVARELGVGFRATSGPILAKAGDLAAILTNLEPRDVLFIDEIHRLSPNVEEIL 122

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           YPAMED  LDL++GEGPSARSV+I+L+ FTL+ ATTR GLL  PL+DRFGIP+RL FY  
Sbjct: 123 YPAMEDHVLDLIIGEGPSARSVRIDLAPFTLVGATTRAGLLATPLRDRFGIPLRLEFYTP 182

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           ++L  +V+  A+  G A+ +  A EIA R+RGTPRIAGRLLRRVRDFA    A+TI++ +
Sbjct: 183 DELTAVVRGTARKMGAAIDEAGAREIASRARGTPRIAGRLLRRVRDFASADGAETISKLV 242

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           A  AL RL +D+ G D LD R+L  +  N+GGGPVG++T++A ++E RDA+ED+IEPY++
Sbjct: 243 AAKALARLEVDEAGLDSLDRRFLKALIENYGGGPVGMDTLAAAIAEARDAVEDVIEPYLL 302

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGID 330
           QQGFI RTPRGR+    A+ HLG++
Sbjct: 303 QQGFIMRTPRGRMACAKAYAHLGLN 327


>gi|171778365|ref|ZP_02919544.1| hypothetical protein STRINF_00395 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282896|gb|EDT48320.1| hypothetical protein STRINF_00395 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 332

 Score =  351 bits (901), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 168/323 (52%), Positives = 226/323 (69%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +  E+     LRP+ L+E+ GQ +  + LK+FIEAAK R E+LDHVL  GPPGLGKTT+A
Sbjct: 10  MGDEEFVERTLRPQYLKEYIGQDKVKNQLKIFIEAAKLRDESLDHVLLFGPPGLGKTTMA 69

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            V+A ELGVN + TSGP I KAGDL A+L +LE  DVLFIDEIHR+ + VEE+LY AMED
Sbjct: 70  FVIANELGVNLKQTSGPAIEKAGDLVAILNDLEPGDVLFIDEIHRMPMAVEEVLYSAMED 129

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F +D+M+G G ++RSV ++L  FTLI ATTR G+L+NPL+ RFGI   + +Y ++DL  I
Sbjct: 130 FYIDIMIGNGETSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYAVDDLTEI 189

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           V+R A +  + +  EAA E+A RSRGTPRIA RLL+RVRD+A++     IT++I D AL 
Sbjct: 190 VERTADIFEMEIVHEAAQELARRSRGTPRIANRLLKRVRDYAQIMGDGIITKDITDKALT 249

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L +D  G D +D + L  +   + GGPVG+ T+S  ++E RD +ED+ EPY+IQ+GFI 
Sbjct: 250 MLDVDHEGLDYIDQKILRTMIEVYNGGPVGLGTLSVNIAEERDTVEDMYEPYLIQKGFIM 309

Query: 312 RTPRGRLLMPIAWQHLGIDIPHR 334
           RT  GR+    A+ HLG     +
Sbjct: 310 RTRTGRVATAKAYDHLGYPYAEK 332


>gi|295398600|ref|ZP_06808632.1| crossover junction ATP-dependent DNA helicase RuvB [Aerococcus
           viridans ATCC 11563]
 gi|294973201|gb|EFG48996.1| crossover junction ATP-dependent DNA helicase RuvB [Aerococcus
           viridans ATCC 11563]
          Length = 353

 Score =  351 bits (901), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 174/326 (53%), Positives = 225/326 (69%), Gaps = 1/326 (0%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           + S +   ++     LRP+ L E+ GQ E    L ++I+AA+ R EALDHVL  GPPGLG
Sbjct: 24  IHSPHAQADEVQELSLRPKFLREYIGQAELKEELAIYIQAAENRDEALDHVLLYGPPGLG 83

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTTLA ++A E+GVN ++TSGP I K GDL  LL  L   DVLFIDEIHRL  +VEE+LY
Sbjct: 84  KTTLANIIANEMGVNIQTTSGPAIEKTGDLLVLLNELSAGDVLFIDEIHRLPRVVEEMLY 143

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            AMED+Q+D++VG+   A  V   L  FTLI ATTR G L++PL+ RFGI   L +Y ++
Sbjct: 144 SAMEDYQVDIIVGQDEGAHPVHFPLPPFTLIGATTRPGALSSPLRHRFGIVQHLRYYTVD 203

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH-AKTITREI 245
           +L TIV+R A+L  + + D+AA EI MRSRGTPRIA RLL+RVRDFA+V H    I   I
Sbjct: 204 ELATIVERTARLFEVPIKDQAAKEIGMRSRGTPRIANRLLKRVRDFAQVYHEDGLIDDPI 263

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
            D AL  L +D+ G D+ D + L +I R +GGGPVG+ TI+A +SE    IED+ EP++I
Sbjct: 264 TDKALSILKVDQAGLDETDRKILDVIIRYYGGGPVGLSTIAANISEEATTIEDMYEPFLI 323

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDI 331
           Q GF+QRTPRGRL+ P A+ HLGI  
Sbjct: 324 QNGFLQRTPRGRLVTPKAYDHLGIPY 349


>gi|228475179|ref|ZP_04059905.1| holliday junction DNA helicase RuvB [Staphylococcus hominis SK119]
 gi|228270790|gb|EEK12192.1| holliday junction DNA helicase RuvB [Staphylococcus hominis SK119]
          Length = 331

 Score =  351 bits (901), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 165/327 (50%), Positives = 230/327 (70%), Gaps = 2/327 (0%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD + ++ +++  E++     LRP  L+++ GQ    +NL++FI+AAK R E LDHVL  
Sbjct: 1   MD-DRMVDQSLHNEESSFEFSLRPTKLKQYIGQSSIKNNLEIFIKAAKLRDEPLDHVLLF 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTL+ ++A E+ VN R+ SGP + + GDLAA+L+ L+  DVLFIDEIHRLS +
Sbjct: 60  GPPGLGKTTLSNIIANEMEVNIRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSV 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LY AMEDF LD+++G+G  ARS++I+L  FTL+ ATTR G LT PL+DRFG+ +RL
Sbjct: 120 VEEVLYSAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATTRAGSLTGPLRDRFGVHLRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y   DLK I+ R A++ G  + DE+A E+A RSRGTPR+A RLL+RVRDF +V   + 
Sbjct: 180 EYYSESDLKEIIIRTAEVLGTKIDDESAVELAKRSRGTPRVANRLLKRVRDFQQVNEDEQ 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I  E    AL  L +D  G D +D + +  I   + GGPVG++TI+  + E R  IED+ 
Sbjct: 240 IYIETTKQALNLLQVDDEGLDYIDHKMMNCIINQYNGGPVGLDTIAVSIGEERITIEDVY 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHL 327
           EP++IQ+GFI+RTPRGR   P A++H 
Sbjct: 300 EPFLIQKGFIERTPRGRKATPFAYEHF 326


>gi|332638255|ref|ZP_08417118.1| Holliday junction DNA helicase RuvB [Weissella cibaria KACC 11862]
          Length = 336

 Score =  351 bits (900), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 160/334 (47%), Positives = 218/334 (65%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D     +     E++    LRP TL ++ GQ      L+V+I+AA+ R E LDHVL  
Sbjct: 1   MADDILRDTSAELGEESIEKSLRPSTLRQYIGQEPLKQRLQVYIQAARQREEPLDHVLLY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA V+A E+GV  R+TSGP I K+GDL ALL  L+  DVLFIDEIHR+   
Sbjct: 61  GPPGLGKTTLAMVIANEMGVGLRTTSGPAIEKSGDLLALLNELQPGDVLFIDEIHRMPKT 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LY AMEDF +D++ GEGP+AR +   L  FTLI ATTR G+L+ PL+DRFGI   +
Sbjct: 121 VEEMLYSAMEDFYVDIIAGEGPTARPIHFPLPPFTLIGATTRAGMLSQPLRDRFGIVEHM 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y  ++L  I++R A +    +  + A E+A RSRGTPR+A RLLRRVRDFA V     
Sbjct: 181 AYYNTDELAEIIKRSADIFDTEIQPDGAFELARRSRGTPRVANRLLRRVRDFAMVKDRDY 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I  ++ + +L  L +D+ G D++D + L  +   + GGPVG+ TI+A + E  D IE + 
Sbjct: 241 IDDDMVNFSLDLLKVDEAGLDEVDHKILRTMIEFYQGGPVGVNTIAANIGEEVDTIESMY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           EPY++Q GF+QRTPRGR++   A+ HL +    +
Sbjct: 301 EPYLLQIGFLQRTPRGRVVTQAAYAHLDLPYIEK 334


>gi|320450980|ref|YP_004203076.1| holliday junction DNA helicase RuvB [Thermus scotoductus SA-01]
 gi|320151149|gb|ADW22527.1| holliday junction DNA helicase RuvB [Thermus scotoductus SA-01]
          Length = 323

 Score =  351 bits (900), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 176/316 (55%), Positives = 232/316 (73%), Gaps = 1/316 (0%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
               LRPRTL+E+ GQ      L+V++EAAKAR E L+H+L  GPPGLGKTTLA V+A E
Sbjct: 3   PDLALRPRTLDEYIGQERLKKKLRVYLEAAKARGEPLEHLLLFGPPGLGKTTLAHVIAHE 62

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTN-LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           LGVN R TSGP I K GDLAA+L N LE+ D+LFIDEIHRLS   EE LYPAMEDF++D+
Sbjct: 63  LGVNLRVTSGPAIEKPGDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFKMDI 122

Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA 196
           ++G+GP+AR++++ L RFTLI ATTR GL+T PL+ RFGI   L +Y +E+L   V+R A
Sbjct: 123 VIGQGPAARTIRLELPRFTLIGATTRPGLITAPLRSRFGIVEHLEYYSLEELAEGVRRDA 182

Query: 197 KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAID 256
           +L G+A+T+EAA EIA RSRGT R+A RL RRVRDFA+VA  +TIT+E    AL  L +D
Sbjct: 183 RLLGVAITEEAALEIAKRSRGTMRVAKRLFRRVRDFAQVAGEETITQERTLEALNALGLD 242

Query: 257 KMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRG 316
           ++G ++ D   L  +   FGGGPVG++T++  +SE    +E++ EPY+IQQG ++RTPRG
Sbjct: 243 ELGLEKRDREILETLILRFGGGPVGLQTLATAVSEDPGTLEEVHEPYLIQQGLLKRTPRG 302

Query: 317 RLLMPIAWQHLGIDIP 332
           R+    A++HLG   P
Sbjct: 303 RVATERAYRHLGYPPP 318


>gi|323204055|gb|EFZ89070.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
          Length = 338

 Score =  351 bits (900), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 182/310 (58%), Positives = 235/310 (75%), Gaps = 1/310 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S   +  ED     +RP+ L E+ GQ +  S +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRLISAGATIAEDVADRAIRPKFLAEYVGQPQVRSQMEIFIQAAKLRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IV R A+  GL ++D+ A E+A R+RGTPRIA RLLRRVRDFAEV H  
Sbjct: 181 LEFYQVPDLQHIVGRSARHMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I+ EIA  AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED+
Sbjct: 241 AISAEIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDV 300

Query: 300 IEPYMIQQGF 309
           +EPY+IQQGF
Sbjct: 301 LEPYLIQQGF 310


>gi|325473682|gb|EGC76871.1| Holliday junction ATP-dependent DNA helicase ruvB [Treponema
           denticola F0402]
          Length = 343

 Score =  351 bits (900), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 161/333 (48%), Positives = 222/333 (66%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D   ++       D     LRPR+L +F GQ +A  NL VFI+AA+ R E+LDH+  +
Sbjct: 1   MSDDFEVVRPEEQAGDEKDRALRPRSLVDFQGQTKAKENLSVFIKAARERGESLDHLFLI 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ+ A ELGV+F+ T  P + K  DLA +LT L +R V FIDEIHRL   
Sbjct: 61  GPPGLGKTTLAQITANELGVDFKVTGAPALDKPKDLAGILTTLTERSVFFIDEIHRLKPA 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EE+LY AMED++LD ++G+GP AR+V+I +  FTL+ ATTR G++++PL  RFGI  R 
Sbjct: 121 IEEMLYIAMEDYELDWIIGQGPGARTVRIPIPPFTLVGATTRAGMVSSPLISRFGIVQRF 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  E+L +I+ R A +  + +  +AA  +A  SRGTPR+A RLLRR+RDFA+VA   +
Sbjct: 181 EFYSHEELASIISRSASILEIEIEKKAAIALARCSRGTPRVANRLLRRMRDFAQVAGKSS 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I      A L +L ID +G +  D + L  I  N+ GGPVG ET++  + E +D +ED  
Sbjct: 241 IDEMTVAAGLKQLNIDGLGLETYDRQILRSIIENYSGGPVGAETLAISIGESQDTLEDYY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY+IQ G +QRTPRGR++   A++HLG++ P 
Sbjct: 301 EPYLIQSGLLQRTPRGRMVTLKAYEHLGLNPPK 333


>gi|320548063|ref|ZP_08042343.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           equinus ATCC 9812]
 gi|320447305|gb|EFW88068.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           equinus ATCC 9812]
          Length = 332

 Score =  351 bits (900), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 169/323 (52%), Positives = 225/323 (69%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +  E+     LRP+ L+E+ GQ +  + LK+FIEAAK R E+LDHVL  GPPGLGKTT+A
Sbjct: 10  MGDEEFVERTLRPQYLKEYIGQDKVKNQLKIFIEAAKLRDESLDHVLLFGPPGLGKTTMA 69

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            V+A ELGVN + TSGP I KAGDL A+L +LE  DVLFIDEIHR+ + VEE+LY AMED
Sbjct: 70  FVIANELGVNLKQTSGPAIEKAGDLVAILNDLEPGDVLFIDEIHRMPMAVEEVLYSAMED 129

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F +D+M+G G ++RSV + L  FTLI ATTR G+L+NPL+ RFGI   + +Y +EDL  I
Sbjct: 130 FYIDIMIGNGETSRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYAVEDLTEI 189

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           V+R A +  + +  EAA E+A RSRGTPRIA RLL+RVRD+A++     IT+ I D AL 
Sbjct: 190 VERTADIFEMEIVHEAAQELARRSRGTPRIANRLLKRVRDYAQIMGDGIITKGITDKALT 249

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L +D  G D +D + L  +   + GGPVG+ T+S  ++E RD +ED+ EPY+IQ+GFI 
Sbjct: 250 MLDVDHEGLDYIDQKILRTMIEVYNGGPVGLGTLSVNIAEERDTVEDMYEPYLIQKGFIM 309

Query: 312 RTPRGRLLMPIAWQHLGIDIPHR 334
           RT  GR+    A++HLG     +
Sbjct: 310 RTRTGRVATAKAYEHLGYPYIEK 332


>gi|300172984|ref|YP_003772150.1| Holliday junction DNA Helicase RuvB [Leuconostoc gasicomitatum LMG
           18811]
 gi|299887363|emb|CBL91331.1| holliday junction DNA helicase RuvB [Leuconostoc gasicomitatum LMG
           18811]
          Length = 352

 Score =  351 bits (900), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 161/317 (50%), Positives = 216/317 (68%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E ++   LRP+ L E+ GQ      L V+I AAK R EALDHVL  GPPGLGKTTLA ++
Sbjct: 32  EQSNEFSLRPQFLREYIGQAALKEELNVYISAAKQREEALDHVLLFGPPGLGKTTLAMII 91

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A E+ V+ ++TSGP I K GDL ALL  LE  D+LFIDEIHRL   +EEI+Y AMED+ +
Sbjct: 92  ANEMAVHIKTTSGPAIEKPGDLVALLNELEPGDILFIDEIHRLPTNIEEIMYSAMEDYFV 151

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D+MVG+GP+AR+V   L  FTLI ATTR G+L+ PL+DRFGI   + +Y  E+L+ IV R
Sbjct: 152 DIMVGQGPTARAVHFPLPPFTLIGATTRPGMLSKPLRDRFGIINAMAYYTPEELQEIVVR 211

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            + +    +    A E+A+RSRGTPRIA RLL+RVRDFA+V     I + I D AL +L 
Sbjct: 212 SSDIFNAPIKLAGAYEVALRSRGTPRIANRLLKRVRDFAQVEGKSAIDKAIVDIALDKLR 271

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D  G D+ D ++L  +   + GGPVG+ TI+A + E  + +E ++EPY++Q GF+QRTP
Sbjct: 272 VDNRGLDETDHKFLGTMIEYYKGGPVGLNTIAANIGEEAETLESMVEPYLLQIGFLQRTP 331

Query: 315 RGRLLMPIAWQHLGIDI 331
           RGR++   A+ HL I  
Sbjct: 332 RGRVVTESAYAHLKIPY 348


>gi|237744244|ref|ZP_04574725.1| holliday junction DNA helicase ruvB [Fusobacterium sp. 7_1]
 gi|256027908|ref|ZP_05441742.1| Holliday junction DNA helicase RuvB [Fusobacterium sp. D11]
 gi|260494172|ref|ZP_05814303.1| Holliday junction DNA helicase RuvB [Fusobacterium sp. 3_1_33]
 gi|289765857|ref|ZP_06525235.1| holliday junction DNA helicase ruvB [Fusobacterium sp. D11]
 gi|229431473|gb|EEO41685.1| holliday junction DNA helicase ruvB [Fusobacterium sp. 7_1]
 gi|260198318|gb|EEW95834.1| Holliday junction DNA helicase RuvB [Fusobacterium sp. 3_1_33]
 gi|289717412|gb|EFD81424.1| holliday junction DNA helicase ruvB [Fusobacterium sp. D11]
          Length = 332

 Score =  351 bits (900), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 162/324 (50%), Positives = 229/324 (70%), Gaps = 1/324 (0%)

Query: 5   EGLLSR-NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E ++S   +  E      LRP++ +E+ GQ      + + I+AA+ R   +DH+L  GPP
Sbjct: 2   ERIISELEMPNEVEIQKSLRPKSFDEYIGQENLKEKMSISIKAAQKRNMVVDHILLYGPP 61

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA V+A E+  N + TSGP++ KAGDLAA+LT+LE+ D+LFIDEIHRL+  VEE
Sbjct: 62  GLGKTTLAGVIANEMKANLKITSGPILEKAGDLAAILTSLEENDILFIDEIHRLNSTVEE 121

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILYPAMED +LD+++G+GPSA+S++I L  FTLI ATTR GLL+ PL+DRFG+  ++ +Y
Sbjct: 122 ILYPAMEDGELDIIIGKGPSAKSIRIELPPFTLIGATTRAGLLSAPLRDRFGVSHKMEYY 181

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
              ++K+I+ RGAK+ G+ + ++ A EI+ RSRGTPRIA RLL+RVRD+ E+    TI +
Sbjct: 182 NENEIKSIIIRGAKILGVKIDEDGAIEISKRSRGTPRIANRLLKRVRDYCEIKGNGTIDK 241

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
             A +AL  L +D  G D LD   +  I  N+ GGPVGIET+S  L E R  +E++ EPY
Sbjct: 242 LSAKSALDMLGVDSNGLDDLDRNIVNSIIENYDGGPVGIETLSLLLGEDRRTLEEVYEPY 301

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHL 327
           +++ GF++RT RGR++ P A+QH 
Sbjct: 302 LVKIGFLKRTNRGRVVTPKAYQHF 325


>gi|187735135|ref|YP_001877247.1| Holliday junction DNA helicase RuvB [Akkermansia muciniphila ATCC
           BAA-835]
 gi|238691873|sp|B2UPI9|RUVB_AKKM8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|187425187|gb|ACD04466.1| Holliday junction DNA helicase RuvB [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 339

 Score =  351 bits (900), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 159/331 (48%), Positives = 218/331 (65%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M          +   A    LRP    EF GQ +    L + +EAA+ R + LDH+L  G
Sbjct: 1   MGESFYTRTTEAPSSAFDLSLRPPAFSEFCGQEKIKDRLMLMVEAARQRDDVLDHILLSG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A  +G    +TSGP I KAGDLA +LTNLE  D+LFIDEIHRL   +
Sbjct: 61  PPGLGKTTLANIIANAVGCRIHTTSGPQIEKAGDLAGVLTNLEKGDILFIDEIHRLHPAI 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE LYPAMEDF+LD+++ +GP+ARS+++NL +FTL+ ATTR G+LT+PL+ RFG+  RL+
Sbjct: 121 EEYLYPAMEDFRLDIIIDQGPNARSIQLNLPKFTLVGATTRAGMLTSPLRSRFGLVNRLD 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y  E+L  I++R A L  + V  E A +IA+RSRGTPR+A  LLR VRD+A+V     I
Sbjct: 181 YYTREELCAIIERSAGLLNVPVDPEGALQIALRSRGTPRVANSLLRWVRDYAQVRGDGVI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T ++A  AL  + ID  G D++D R L  +   F GGPVG+ +++  + E    +ED+ E
Sbjct: 241 TEQLAHDALTMIEIDDDGLDEMDKRLLEAMIYKFNGGPVGLSSLAVAVGEDASTLEDVHE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           P++I QG+I RTPRGR+ MP A+  +G   P
Sbjct: 301 PFLIMQGYISRTPRGRVAMPSAYLKMGAAPP 331


>gi|148653254|ref|YP_001280347.1| Holliday junction DNA helicase RuvB [Psychrobacter sp. PRwf-1]
 gi|172048527|sp|A5WFF6|RUVB_PSYWF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|148572338|gb|ABQ94397.1| Holliday junction DNA helicase subunit RuvB [Psychrobacter sp.
           PRwf-1]
          Length = 325

 Score =  351 bits (900), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 193/324 (59%), Positives = 244/324 (75%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
              L++     +D+  + +RP TL E+ GQ      ++VFIEAA+ R EALDH L  GPP
Sbjct: 2   ENRLINPVERVDDSVDNNIRPSTLAEYIGQPVVREQMEVFIEAARRRNEALDHTLIFGPP 61

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++ARE+G N RSTSGPV+ +AGDLAA+LTNLE+ DVLFIDEIHRLS ++EE
Sbjct: 62  GLGKTTLANIIAREMGGNLRSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPVIEE 121

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILYPAMEDFQLD+M+GEGP+ARS+K++L  FTL+AATTR GLLT+PL+DRFGI  RL FY
Sbjct: 122 ILYPAMEDFQLDIMIGEGPAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRLEFY 181

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            IEDL TIV R A+L  + +T E A E+A RSRGTPRIA RLLRRVRD+A+V     +T 
Sbjct: 182 NIEDLTTIVSRSARLMNVVMTPEGAVEVARRSRGTPRIANRLLRRVRDYAQVKSNGEVTG 241

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           EIAD+AL  LA+D+ G D LD RY+ M+   F  GP G+E I+A ++E R  +ED+IEPY
Sbjct: 242 EIADSALDMLAVDRRGLDHLDRRYIEMVHARFDNGPAGVEAIAAAMAEDRGTLEDVIEPY 301

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHL 327
           +IQQG++ RT RGR+L  +A   L
Sbjct: 302 LIQQGYVLRTARGRVLTQMAIDQL 325


>gi|297205605|ref|ZP_06923001.1| crossover junction ATP-dependent DNA helicase RuvB [Lactobacillus
           jensenii JV-V16]
 gi|297150183|gb|EFH30480.1| crossover junction ATP-dependent DNA helicase RuvB [Lactobacillus
           jensenii JV-V16]
          Length = 336

 Score =  350 bits (899), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 163/334 (48%), Positives = 223/334 (66%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M +   +++    Q D    L LRP++  ++ GQ    S ++++I+AAK R EALDHVL 
Sbjct: 1   MDEDSRVVAGEEEQGDLQDELSLRPQSFSQYIGQKRVKSEMEIYIQAAKKRDEALDHVLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTT+A V+A ELGVN ++TSGP I +AGDL ALL++L+  DVLFIDEIHRL+ 
Sbjct: 61  YGPPGLGKTTMAFVIANELGVNLKNTSGPAIERAGDLVALLSDLDPGDVLFIDEIHRLAK 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            +EEILY AMED+ +D++VGEG ++ +V + L  FTLI ATTR G L+ PL+DRFGI   
Sbjct: 121 PIEEILYSAMEDYYVDIVVGEGSTSHAVHVPLPPFTLIGATTRAGDLSAPLRDRFGIVEH 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           + +Y I DL+ I+QR +++    +  EAA E+A RSRGTPR+A RLL+RVRD+A+V    
Sbjct: 181 MQYYTIGDLEKIIQRSSEVFATKIGKEAAHELARRSRGTPRVANRLLKRVRDYAQVKEEN 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I+      AL +L +D  G D  D + L  I   + GGPVGI T++A + E  D IE +
Sbjct: 241 KISLATTKYALDQLQVDNEGLDLTDRKILRTIIEAYHGGPVGIRTLAANIGEDTDTIEAV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            EPY++Q  FI  TPRGR+    A+  LGI +P 
Sbjct: 301 YEPYLLQHKFITMTPRGRVATQKAYLQLGIPLPE 334


>gi|332978481|gb|EGK15193.1| crossover junction ATP-dependent DNA helicase RuvB [Psychrobacter
           sp. 1501(2011)]
          Length = 325

 Score =  350 bits (899), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 196/324 (60%), Positives = 246/324 (75%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
              L++    Q+D   S +RP TL E+ GQ      ++VFIEAA+ R EALDH L  GPP
Sbjct: 2   ENRLINPLERQDDTVDSNIRPGTLAEYIGQPVVREQMEVFIEAARRRDEALDHTLIFGPP 61

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++A+E+G N RSTSGPV+ +AGDLAA+LTNLE+ DVLFIDEIHRLS ++EE
Sbjct: 62  GLGKTTLANIIAKEMGGNLRSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPVIEE 121

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILYPAMEDFQLD+M+GEGP+ARS+K++L RFTL+AATTR GLLT+PL+DRFGI  RL FY
Sbjct: 122 ILYPAMEDFQLDIMIGEGPAARSIKLDLPRFTLVAATTRAGLLTSPLRDRFGIVQRLEFY 181

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            IEDL TIV R A+L  + +T E A E+A RSRGTPRIA RLLRRVRD+AEV     +T 
Sbjct: 182 NIEDLTTIVSRSARLMNVEMTAEGAVEVARRSRGTPRIANRLLRRVRDYAEVKSNGKVTG 241

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           +IAD+AL  LA+D+ G D LD RY+ M+   F GGP G+E I+A ++E R  +ED+IEPY
Sbjct: 242 DIADSALDMLAVDRRGLDHLDRRYIEMVHARFDGGPAGVEAIAAAMAEDRGTLEDVIEPY 301

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHL 327
           +IQQG++ RT RGR+L  +A   L
Sbjct: 302 LIQQGYVLRTARGRVLTQMAIDQL 325


>gi|314936246|ref|ZP_07843593.1| holliday junction DNA helicase RuvB [Staphylococcus hominis subsp.
           hominis C80]
 gi|313654865|gb|EFS18610.1| holliday junction DNA helicase RuvB [Staphylococcus hominis subsp.
           hominis C80]
          Length = 331

 Score =  350 bits (899), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 164/327 (50%), Positives = 230/327 (70%), Gaps = 2/327 (0%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD + ++ +++  E++     LRP  L+++ GQ    +NL++FI+AAK R E LDHVL  
Sbjct: 1   MD-DRMVDQSLHNEESSFEFSLRPTKLKQYIGQSSIKNNLEIFIKAAKLRDEPLDHVLLF 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTL+ ++A E+ VN R+ SGP + + GDLAA+L+ L+  DVLFIDEIHRLS +
Sbjct: 60  GPPGLGKTTLSNIIANEMEVNIRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSV 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LY AMEDF LD+++G+G  ARS++I+L  FTL+ ATTR G LT PL+DRFG+ +RL
Sbjct: 120 VEEVLYSAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATTRAGSLTGPLRDRFGVHLRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y   DLK I+ R A++ G  + DE+A E+A RSRGTPR+A RLL+RVRDF +V   + 
Sbjct: 180 EYYSESDLKEIIIRTAEVLGTKIDDESAVELAKRSRGTPRVANRLLKRVRDFQQVNEDEQ 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I  E    AL  L +D  G D +D + +  I   + GGPVG++T++  + E R  IED+ 
Sbjct: 240 IYIETTKQALNLLQVDDEGLDYIDHKMMNCIINQYNGGPVGLDTLAVSIGEERITIEDVY 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHL 327
           EP++IQ+GFI+RTPRGR   P A++H 
Sbjct: 300 EPFLIQKGFIERTPRGRKATPFAYEHF 326


>gi|116617728|ref|YP_818099.1| Holliday junction DNA helicase B [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|122272071|sp|Q03YJ6|RUVB_LEUMM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|116096575|gb|ABJ61726.1| Holliday junction DNA helicase subunit RuvB [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
          Length = 351

 Score =  350 bits (899), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 161/322 (50%), Positives = 212/322 (65%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
            +E      LRP+ L E+ GQ      L V+I AAK R EALDHVL  GPPGLGKTTLA 
Sbjct: 29  DEEQRSELSLRPQFLREYIGQEALKEELNVYISAAKQREEALDHVLLFGPPGLGKTTLAM 88

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++A E+ VN ++TSGP I K GDL ALL  LE  D+LFIDEIHR+   +EEI+Y AMED+
Sbjct: 89  IIANEMNVNIKTTSGPAIEKPGDLVALLNELEPGDILFIDEIHRIPTNIEEIMYSAMEDY 148

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            +D+MVG+GP+AR V   L  FTLI ATTR G+L+ PL+DRFGI   L +Y  E+L+ IV
Sbjct: 149 FVDIMVGQGPTARPVHFPLPPFTLIGATTRPGMLSKPLRDRFGIINSLQYYTPEELQQIV 208

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R A +    +  E A EI++RSRGTPRIA RLL+RVRDFA+V     I + I    L +
Sbjct: 209 VRTADIFNAPIKSEGAYEISLRSRGTPRIANRLLKRVRDFAQVEGKDAIDKNIVTIGLDK 268

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D  G D+ D + L  +   + GGPVG+ TI+A + E  + +E ++EPY++Q GF+QR
Sbjct: 269 LRVDNRGLDETDHKLLETMIEYYKGGPVGLNTIAANIGEESETLEAMVEPYLLQIGFLQR 328

Query: 313 TPRGRLLMPIAWQHLGIDIPHR 334
           TPRGR++    + HLG     +
Sbjct: 329 TPRGRVVTEAGYTHLGHAYQRK 350


>gi|15924631|ref|NP_372165.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|15927221|ref|NP_374754.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus N315]
 gi|21283320|ref|NP_646408.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus MW2]
 gi|49486474|ref|YP_043695.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|148268121|ref|YP_001247064.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus JH9]
 gi|150394189|ref|YP_001316864.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156979959|ref|YP_001442218.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus Mu3]
 gi|253317208|ref|ZP_04840421.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|255006426|ref|ZP_05145027.2| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257793714|ref|ZP_05642693.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A9781]
 gi|258410987|ref|ZP_05681267.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A9763]
 gi|258420212|ref|ZP_05683167.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A9719]
 gi|258438214|ref|ZP_05689498.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A9299]
 gi|258443677|ref|ZP_05692016.1| Holliday junction DNA helicase B [Staphylococcus aureus A8115]
 gi|258446884|ref|ZP_05695038.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A6300]
 gi|258448798|ref|ZP_05696910.1| Holliday junction DNA helicase subunit RuvB [Staphylococcus aureus
           A6224]
 gi|258453754|ref|ZP_05701729.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A5937]
 gi|269203266|ref|YP_003282535.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282893145|ref|ZP_06301379.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A8117]
 gi|282928276|ref|ZP_06335881.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A10102]
 gi|295406762|ref|ZP_06816567.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A8819]
 gi|296275926|ref|ZP_06858433.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297207638|ref|ZP_06924073.1| crossover junction ATP-dependent DNA helicase RuvB [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|300911721|ref|ZP_07129164.1| crossover junction ATP-dependent DNA helicase RuvB [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|54039579|sp|P66758|RUVB_STAAN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|54039580|sp|P66759|RUVB_STAAW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|54042207|sp|P66757|RUVB_STAAM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|56749511|sp|Q6G8S8|RUVB_STAAS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|166231559|sp|A7X357|RUVB_STAA1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|189046052|sp|A6U2A9|RUVB_STAA2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|189046053|sp|A5ITG5|RUVB_STAA9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|13701439|dbj|BAB42733.1| holliday junction DNA helicase [Staphylococcus aureus subsp. aureus
           N315]
 gi|14247413|dbj|BAB57803.1| holliday junction DNA helicase [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|21204760|dbj|BAB95456.1| holliday junction DNA helicase [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49244917|emb|CAG43378.1| Holliday junction DNA helicase [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|147741190|gb|ABQ49488.1| Holliday junction DNA helicase subunit RuvB [Staphylococcus aureus
           subsp. aureus JH9]
 gi|149946641|gb|ABR52577.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156722094|dbj|BAF78511.1| holliday junction DNA helicase [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|257787686|gb|EEV26026.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A9781]
 gi|257840137|gb|EEV64601.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A9763]
 gi|257843923|gb|EEV68317.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A9719]
 gi|257848258|gb|EEV72249.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A9299]
 gi|257851083|gb|EEV75026.1| Holliday junction DNA helicase B [Staphylococcus aureus A8115]
 gi|257854459|gb|EEV77408.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A6300]
 gi|257858076|gb|EEV80965.1| Holliday junction DNA helicase subunit RuvB [Staphylococcus aureus
           A6224]
 gi|257864074|gb|EEV86827.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A5937]
 gi|262075556|gb|ACY11529.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282590083|gb|EFB95165.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A10102]
 gi|282764463|gb|EFC04589.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A8117]
 gi|285817323|gb|ADC37810.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus
           04-02981]
 gi|294968509|gb|EFG44533.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A8819]
 gi|296887655|gb|EFH26553.1| crossover junction ATP-dependent DNA helicase RuvB [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|300885967|gb|EFK81169.1| crossover junction ATP-dependent DNA helicase RuvB [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|312830027|emb|CBX34869.1| holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus ECT-R 2]
 gi|315129926|gb|EFT85916.1| Holliday junction DNA helicase B [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|329727375|gb|EGG63831.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus 21172]
 gi|329733177|gb|EGG69514.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 334

 Score =  350 bits (899), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 167/324 (51%), Positives = 232/324 (71%), Gaps = 1/324 (0%)

Query: 5   EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E ++ +++  E+ D  L LRP  L ++ GQ    SNL+VFI+AAK R E LDHVL  GPP
Sbjct: 3   ERMVDQSMHSEETDFELSLRPTRLRQYIGQNSIKSNLEVFIKAAKLRHEPLDHVLLFGPP 62

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTL+ ++A E+ VN R+ SGP + + GDLAA+L+ L+  DVLFIDEIHRLS +VEE
Sbjct: 63  GLGKTTLSNIIANEMEVNIRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSVVEE 122

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LYPAMEDF LD+++G+G  ARS++I+L  FTL+ ATTR G LT PL+DRFG+ +RL +Y
Sbjct: 123 VLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATTRAGSLTGPLRDRFGVHLRLEYY 182

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
              DLK I+ R A++ G  + +E+A E+A RSRGTPR+A RLL+RVRDF +V   + I  
Sbjct: 183 NESDLKEIIIRTAEVLGTGIDEESAIELAKRSRGTPRVANRLLKRVRDFQQVNEDEQIYI 242

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           E    AL  L +D+ G D +D + +  I + + GGPVG++TI+  + E R  IED+ EP+
Sbjct: 243 ETTKHALGLLQVDQHGLDYIDHKMMNCIIKQYNGGPVGLDTIAVTIGEERITIEDVYEPF 302

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHL 327
           +IQ+GF++RTPRGR   P+A++H 
Sbjct: 303 LIQKGFLERTPRGRKATPLAYEHF 326


>gi|258424066|ref|ZP_05686948.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A9635]
 gi|257845687|gb|EEV69719.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A9635]
 gi|302333314|gb|ADL23507.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
           subsp. aureus JKD6159]
          Length = 334

 Score =  350 bits (899), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 168/324 (51%), Positives = 232/324 (71%), Gaps = 1/324 (0%)

Query: 5   EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E ++ +++  E+ D  L LRP  L ++ GQ    SNL+VFI+AAK R E LDHVL  GPP
Sbjct: 3   ERMVDQSMHSEETDFELSLRPTRLRQYIGQNSIKSNLEVFIKAAKLRHEPLDHVLLFGPP 62

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTL+ ++A E+ VN R+ SGP + + GDLAA+L+ L+  DVLFIDEIHRLS +VEE
Sbjct: 63  GLGKTTLSNIIANEMEVNIRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSVVEE 122

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LYPAMEDF LD+++G+G  ARS++I+L  FTL+ ATTR G LT PL+DRFG+ +RL +Y
Sbjct: 123 VLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATTRAGSLTGPLRDRFGVHLRLEYY 182

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
              DLK I+ R A++ G  + DE+A E+A RSRGTPR+A RLL+RVRDF +V   + I  
Sbjct: 183 NESDLKEIIIRTAEVLGTGIDDESAIELAKRSRGTPRVANRLLKRVRDFQQVNEDEQIYI 242

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           E    AL  L +D+ G D +D + +  I + + GGPVG++TI+  + E R  IED+ EP+
Sbjct: 243 ETTKHALGLLQVDQHGLDYIDHKMMNCIIKQYNGGPVGLDTIAVTIGEERITIEDVYEPF 302

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHL 327
           +IQ+GF++RTPRGR   P+A++H 
Sbjct: 303 LIQKGFLERTPRGRKATPLAYEHF 326


>gi|209527513|ref|ZP_03276016.1| Holliday junction DNA helicase RuvB [Arthrospira maxima CS-328]
 gi|209492062|gb|EDZ92414.1| Holliday junction DNA helicase RuvB [Arthrospira maxima CS-328]
          Length = 369

 Score =  350 bits (899), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 168/335 (50%), Positives = 225/335 (67%), Gaps = 4/335 (1%)

Query: 4   REGLLSRNVSQEDA----DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
            E LL  + + E+         +RP+ L ++ GQ +    L++ I AAK+R E LDH+L 
Sbjct: 29  EESLLIPSPTSEEKNNPKPEEKIRPQQLADYIGQRDLKQVLEIAIAAAKSRREPLDHLLL 88

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTT+A ++A E+GV  + T+ P + K  D+A LL N +  ++LFIDEIHRLS 
Sbjct: 89  YGPPGLGKTTMALILATEMGVKCQITTAPSLEKPRDIAGLLVNQKPGEILFIDEIHRLSK 148

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           + EEILYPAMED +LD+ +G+G SAR+  I L++FT++ ATTR+G LT+PL+DRFG+  R
Sbjct: 149 MAEEILYPAMEDSRLDITIGQGRSARTRSIPLNKFTIVGATTRIGALTSPLRDRFGLIQR 208

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FYE+++L  IV R AKL    +T E A EIA RSRGTPRIA RLLRRVRD+ EV  + 
Sbjct: 209 LRFYEVDELAQIVNRTAKLLKTPITPEGALEIARRSRGTPRIANRLLRRVRDYLEVKASG 268

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT EIA  AL    +D +G D  D   L +I  NF GGPVG+ET++A   E    +E++
Sbjct: 269 DITGEIAAIALELFNVDPLGLDWTDQHLLRIIIENFNGGPVGLETLAAASGEDAQTLEEV 328

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
            EPY++Q GFIQRT RGR+    AWQHLG + P +
Sbjct: 329 QEPYLMQIGFIQRTHRGRIATAKAWQHLGYEPPQK 363


>gi|282901137|ref|ZP_06309068.1| Holliday junction DNA helicase RuvB [Cylindrospermopsis raciborskii
           CS-505]
 gi|281193969|gb|EFA68935.1| Holliday junction DNA helicase RuvB [Cylindrospermopsis raciborskii
           CS-505]
          Length = 370

 Score =  350 bits (899), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 158/329 (48%), Positives = 221/329 (67%), Gaps = 2/329 (0%)

Query: 4   REGLLSRNVS--QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           +E +L +  +  ++D     +RP+   ++ GQ +    L + I+AAK+R + +DH+L  G
Sbjct: 34  QEKILQQEATVGEDDKQEERIRPQRFADYIGQQDLKDVLDIAIKAAKSRGDVMDHLLLYG 93

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           P GLGKTT+A ++A E+GVN++ TS P + +  D+  LL NL+  DVLFIDEIHRLS + 
Sbjct: 94  PAGLGKTTMAMILASEMGVNYKITSAPALERPRDIVGLLVNLKAGDVLFIDEIHRLSRMT 153

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILYPAMED++LD+ +G+G  A+   I LS+FTL+ ATTRVG LT+PL+DRFG+  +L 
Sbjct: 154 EEILYPAMEDYRLDVTIGKGSGAKVRTIPLSKFTLVGATTRVGALTSPLRDRFGLVQKLR 213

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY++E+L  IV R A++    V  E A EIA RSRGTPRIA RLL+RVRD+A V     I
Sbjct: 214 FYQVEELSQIVLRSAEVLQTIVNLEGATEIAKRSRGTPRIANRLLKRVRDYAIVKSRPQI 273

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
            +  A  AL    +D  G D  D + LT+I  NF GGPVG+ET++A   E    IE++ E
Sbjct: 274 DQPTAAEALTLFQVDPCGLDWTDRKMLTVIIENFHGGPVGLETLAAATGEDTQTIEEVYE 333

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           PY++Q G++ RTPRGR++   A+QHLG  
Sbjct: 334 PYLMQIGYLSRTPRGRVVTSAAYQHLGFQ 362


>gi|13346824|gb|AAK19840.1|AF331924_5 Holliday junction DNA-helicase RuvB [Corynebacterium glutamicum]
          Length = 363

 Score =  350 bits (899), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 160/327 (48%), Positives = 225/327 (68%), Gaps = 1/327 (0%)

Query: 8   LSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           +  N+  ++ D  + LRP++L EF GQ +    L + +  AK R    DHVL  GPPGLG
Sbjct: 31  VDANLKPDEYDAEVTLRPKSLTEFIGQPKVRDQLSLVLTGAKNRGVVPDHVLLSGPPGLG 90

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTT+A ++A+ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++   EE+LY
Sbjct: 91  KTTMAMIIAQELGTSLRMTSGPALERAGDLAAMLSNLMEGDVLFIDEIHRIARPAEEMLY 150

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            AMEDF++D++VG+GP A S+ + +  FTL+ ATTR G+LT PL+DRFG   ++ FY++ 
Sbjct: 151 MAMEDFRIDVIVGKGPGATSIPLEIPPFTLVGATTRSGMLTGPLRDRFGFTAQMEFYDVP 210

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           DL  +V+R AK+  + + ++AA EIA RSRGTPRIA RLLRRVRDFAEV     IT   A
Sbjct: 211 DLTKVVKRTAKILDVGIDNDAAVEIASRSRGTPRIANRLLRRVRDFAEVHADGHITMGAA 270

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           +AAL    +D++G D+LD   L  + R  GGGPVG+ T++  + E    +E++ EPY+++
Sbjct: 271 NAALDVFDVDEVGLDRLDRAVLDALIRGHGGGPVGVNTLAVAVGEEPGTVEEVCEPYLVR 330

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            G I RT RGR+    AW+HLG++ P 
Sbjct: 331 AGMIARTGRGRVATAAAWRHLGLEPPE 357


>gi|220904536|ref|YP_002479848.1| Holliday junction DNA helicase RuvB [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219868835|gb|ACL49170.1| Holliday junction DNA helicase RuvB [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 327

 Score =  350 bits (899), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 171/311 (54%), Positives = 233/311 (74%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +RPR+LE+F GQ +  +NL+V+++AA+ R +ALDH LF G PGLGKTTLAQ++A EL
Sbjct: 14  DESVRPRSLEDFIGQDDLRANLRVYLDAARERGKALDHTLFYGNPGLGKTTLAQIMATEL 73

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138
           GVN   TSGPV+ ++GDLAA+LTNL   D+LF+DEIHR+ I VEE+LYPAMEDF+LDL++
Sbjct: 74  GVNLVCTSGPVLERSGDLAAILTNLGSHDILFVDEIHRMPIAVEEVLYPAMEDFKLDLVI 133

Query: 139 GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKL 198
           G+GP+AR+VKI+L  FTL+ ATTR+GL+++PL+DRFGI  RL +Y   DL  +VQR A++
Sbjct: 134 GQGPAARTVKIDLEPFTLVGATTRMGLISSPLRDRFGIVARLEYYSSADLARVVQRTARI 193

Query: 199 TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKM 258
            G+ +T + A EI  RSRGTPRIA RLLRRVRDFA V     +    A  AL R+ +D+ 
Sbjct: 194 LGVTITPDGAEEIGRRSRGTPRIANRLLRRVRDFALVHGNGQVNGHEASVALKRMDVDEH 253

Query: 259 GFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRL 318
           G DQ+D + L ++ +++ GGPVGI+T++   SE    IED+ EPY+IQ GF++RTPRGR+
Sbjct: 254 GLDQMDRKLLEVLIKHYDGGPVGIKTLAVACSEEVRTIEDIYEPYLIQCGFLKRTPRGRM 313

Query: 319 LMPIAWQHLGI 329
               A+ HL +
Sbjct: 314 ATARAYTHLKL 324


>gi|83815259|ref|YP_445272.1| Holliday junction DNA helicase B [Salinibacter ruber DSM 13855]
 gi|97190287|sp|Q2S3F9|RUVB_SALRD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|83756653|gb|ABC44766.1| Holliday junction DNA helicase RuvB [Salinibacter ruber DSM 13855]
          Length = 344

 Score =  350 bits (899), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 162/329 (49%), Positives = 227/329 (68%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
            + L +     ++    LLRP++L+EF GQ +   NL VF++AA  R E LDHVL  GPP
Sbjct: 6   SDALKAEADRSDNDVEKLLRPQSLDEFVGQEKIKENLNVFMKAALQRGETLDHVLLSGPP 65

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++A E+G   R++SGPV+ K  D+A +LTNLE+ D+LFIDEIHRLS +VEE
Sbjct: 66  GLGKTTLAHIIANEMGARIRTSSGPVLEKPADIAGVLTNLEEGDLLFIDEIHRLSSVVEE 125

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
            LY AMED+++D+++ +GP+AR+V+I+L  FT++ ATTR GLLT PL+ RFGI  R ++Y
Sbjct: 126 YLYSAMEDYRIDIVIDQGPNARTVQIDLPPFTMVGATTRKGLLTAPLRARFGIDFRYDYY 185

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
             + L+ I QR A++  +  T + A EIA RSRGTPR+A RLLRR RDFAEV     IT+
Sbjct: 186 TADLLQEITQRSARILDVETTPDGAYEIARRSRGTPRVANRLLRRTRDFAEVEGDGEITK 245

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
            IAD AL  L +D+ G D +D R L  +  NF GGP G++ ++  + E    +E++ EPY
Sbjct: 246 AIADRALNALDVDEEGLDDMDARILLTLIDNFDGGPTGLKNLAVSVGEESGTLEEVYEPY 305

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           +IQ+GF++RTP+GR+ +  A+ H     P
Sbjct: 306 LIQEGFMERTPQGRVALQRAYDHFDRSSP 334


>gi|115379905|ref|ZP_01466964.1| holliday junction DNA helicase RuvB [Stigmatella aurantiaca
           DW4/3-1]
 gi|115363081|gb|EAU62257.1| holliday junction DNA helicase RuvB [Stigmatella aurantiaca
           DW4/3-1]
          Length = 344

 Score =  350 bits (899), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 176/329 (53%), Positives = 232/329 (70%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
            + L    +  +    + LRPRT EE+ GQ      LKV++ AA  R +ALDH LF GPP
Sbjct: 7   SDTLSEEVLGDDVRLEASLRPRTFEEYVGQDAVVEKLKVYVRAAGQRRDALDHCLFSGPP 66

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKT+LA ++A ELGV    TSGP + + GDLA LLTNL +RDVLFIDEIHRL+  VEE
Sbjct: 67  GLGKTSLAHIIASELGVGIHVTSGPALERKGDLAGLLTNLNERDVLFIDEIHRLNAAVEE 126

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
            LYPAMEDF+LD+ +  GP+AR++KI+L  FTLI ATTR GLLT+PL+DRF I  RL++Y
Sbjct: 127 YLYPAMEDFRLDITIDTGPAARAMKIDLPPFTLIGATTRTGLLTSPLRDRFQIQERLDYY 186

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           E + L+ I+ R A++ G+ +  +A+ EI+ RSRGTPRI+ RLLRR+RDFA+V     ITR
Sbjct: 187 EPKYLEMILNRSARILGVPLERDASKEISTRSRGTPRISNRLLRRLRDFAQVEGEGHITR 246

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           E+A  +L RL +D  G D +D + L  I   FGGGPVG+ETI+A + E RD+IED+ EPY
Sbjct: 247 ELARVSLDRLGVDASGLDSMDRKILLTIIDKFGGGPVGVETIAASVGEQRDSIEDVYEPY 306

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++Q+GF+QRTPRGR+    A+ +     P
Sbjct: 307 LLQEGFLQRTPRGRMATHRAYGYFKRAPP 335


>gi|303328182|ref|ZP_07358620.1| holliday junction DNA helicase RuvB [Desulfovibrio sp. 3_1_syn3]
 gi|302861512|gb|EFL84448.1| holliday junction DNA helicase RuvB [Desulfovibrio sp. 3_1_syn3]
          Length = 324

 Score =  350 bits (899), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 172/311 (55%), Positives = 235/311 (75%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +RPR+L++F GQ E  +NL+V+++AA+ R +ALDH LF G PGLGKTTLAQ++A EL
Sbjct: 11  DESVRPRSLDDFIGQDELRANLRVYLDAARERGKALDHTLFYGNPGLGKTTLAQIMASEL 70

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138
           GVN   TSGPV+ ++GDLAA+LTNL   D+LF+DEIHR+ I VEE+LYPAMEDF+LDL++
Sbjct: 71  GVNLVCTSGPVLERSGDLAAILTNLGRHDILFVDEIHRMPIAVEEVLYPAMEDFKLDLVI 130

Query: 139 GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKL 198
           G+GP+AR+VKI+L  FTL+ ATTR+GL+++PL+DRFGI  RL +Y   DL  +V+R A++
Sbjct: 131 GQGPAARTVKIDLEPFTLVGATTRMGLISSPLRDRFGIVARLEYYSPTDLARVVRRTARI 190

Query: 199 TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKM 258
            G+ VT + A EI  RSRGTPRIA RLLRRVRDFA +     +T   A AAL R+ +D+ 
Sbjct: 191 LGVEVTPDGAEEIGRRSRGTPRIANRLLRRVRDFALIRGNGQVTGGEASAALKRMDVDEH 250

Query: 259 GFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRL 318
           G DQ+D + L ++  ++ GGPVGI+T++   SE    IED+ EPY+IQ GF++RTPRGR+
Sbjct: 251 GLDQMDRKLLEVLITHYDGGPVGIKTLAVACSEEVRTIEDIYEPYLIQCGFLKRTPRGRM 310

Query: 319 LMPIAWQHLGI 329
               A++HL +
Sbjct: 311 ATARAYKHLKL 321


>gi|297245655|ref|ZP_06929520.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A8796]
 gi|297177306|gb|EFH36558.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A8796]
          Length = 334

 Score =  350 bits (898), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 167/324 (51%), Positives = 232/324 (71%), Gaps = 1/324 (0%)

Query: 5   EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E ++ +++  E+ D  L LRP  L ++ GQ    SNL+VFI+AAK R E LDHVL  GPP
Sbjct: 3   ERMVDQSMHSEEIDFELSLRPTRLRQYIGQNSIKSNLEVFIKAAKLRHEPLDHVLLFGPP 62

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTL+ ++A E+ VN R+ SGP + + GDLAA+L+ L+  DVLFIDEIHRLS +VEE
Sbjct: 63  GLGKTTLSNIIANEMEVNIRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSVVEE 122

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LYPAMEDF LD+++G+G  ARS++I+L  FTL+ ATTR G LT PL+DRFG+ +RL +Y
Sbjct: 123 VLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATTRAGSLTGPLRDRFGVHLRLEYY 182

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
              DLK I+ R A++ G  + +E+A E+A RSRGTPR+A RLL+RVRDF +V   + I  
Sbjct: 183 NESDLKEIIIRTAEVLGTGIDEESAIELAKRSRGTPRVANRLLKRVRDFQQVNEDEQIYI 242

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           E    AL  L +D+ G D +D + +  I + + GGPVG++TI+  + E R  IED+ EP+
Sbjct: 243 ETTKHALGLLQVDQHGLDYIDHKMMNCIIKQYNGGPVGLDTIAVTIGEERITIEDVYEPF 302

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHL 327
           +IQ+GF++RTPRGR   P+A++H 
Sbjct: 303 LIQKGFLERTPRGRKATPLAYEHF 326


>gi|295425861|ref|ZP_06818541.1| crossover junction ATP-dependent DNA helicase RuvB [Lactobacillus
           amylolyticus DSM 11664]
 gi|295064464|gb|EFG55392.1| crossover junction ATP-dependent DNA helicase RuvB [Lactobacillus
           amylolyticus DSM 11664]
          Length = 341

 Score =  350 bits (898), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 165/331 (49%), Positives = 221/331 (66%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           D   L     ++E+     LRP++L+++ GQ      + V+I+AA+ R EALDHVL  GP
Sbjct: 9   DAITLSEAQDAEEEQVEMSLRPQSLDQYLGQARVKKEMAVYIKAARQRDEALDHVLLYGP 68

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA V+A ELGV+ +STSGP I KAGDL ALL+ L+  DVLFIDEIHRL   +E
Sbjct: 69  PGLGKTTLAFVIAHELGVHLKSTSGPAIEKAGDLVALLSELDPGDVLFIDEIHRLPKPIE 128

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LY AMEDF +D+M+GEG +  +V + L  FTLI ATT  G L+ PL+DRFGI   + +
Sbjct: 129 EVLYSAMEDFYVDIMIGEGETTHAVHVPLPPFTLIGATTLAGQLSAPLRDRFGIVEHMQY 188

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y + +L+ I+QR   +   ++  EAA E+A RSRGTPR+A RLL+RVRDFAEV    TI+
Sbjct: 189 YTVNELEQIIQRSGDVFHTSIAPEAAHELARRSRGTPRVANRLLKRVRDFAEVKGEDTIS 248

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            +  + AL +L +D  G D  D + L  +   +GGGPVGI T++A + E  D IE L EP
Sbjct: 249 LKTTEHALKQLQVDDEGLDLTDRKLLRTMIEGYGGGPVGIRTLAASVGEDIDTIESLYEP 308

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           Y++Q GFI  TPRGR+    A+  LG+  P+
Sbjct: 309 YLLQHGFILLTPRGRMATDKAYAQLGLPNPN 339


>gi|298529946|ref|ZP_07017348.1| Holliday junction DNA helicase RuvB [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509320|gb|EFI33224.1| Holliday junction DNA helicase RuvB [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 319

 Score =  350 bits (898), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 172/314 (54%), Positives = 231/314 (73%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +   +RP TL++F GQ +  SNLKV++ AA  R   LDH L  G PGLGKTT+A+++A E
Sbjct: 6   NDEHVRPHTLDQFVGQEDVRSNLKVYLGAALERGLHLDHTLLYGNPGLGKTTMARILAGE 65

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           LGVN   T+GPV+ ++ DLAA+LTNL   DVLFIDEIHR+   VEEILYPA+EDF+LDL+
Sbjct: 66  LGVNIVCTTGPVLERSADLAAILTNLSRNDVLFIDEIHRMPATVEEILYPALEDFKLDLI 125

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
           +G+GP AR+VKI+L  FTL+ ATTR+GLLT+PL+DRFG+  RL+FY  E+L TIV+R A+
Sbjct: 126 LGQGPGARTVKIDLEPFTLVGATTRIGLLTSPLRDRFGVICRLDFYAPEELATIVERSAR 185

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257
           + G+ +T + A EI  RSRGTPRIA RLLRRV DFA V   + I  ++A  AL R+ +D 
Sbjct: 186 ILGINITSDGALEIGRRSRGTPRIANRLLRRVHDFAVVGRQEVIDSQVASRALKRMDVDP 245

Query: 258 MGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317
           +G DQ+D + L  I R F GGPVG++T++   SE    +ED+ EPY+IQ GF++RTPRGR
Sbjct: 246 LGLDQMDRKILDCIIRQFAGGPVGVKTVAVACSEEVRTLEDIYEPYLIQCGFLKRTPRGR 305

Query: 318 LLMPIAWQHLGIDI 331
           +  P A++HL + +
Sbjct: 306 VATPRAYEHLNLPV 319


>gi|237785620|ref|YP_002906325.1| Holliday junction DNA helicase RuvB [Corynebacterium kroppenstedtii
           DSM 44385]
 gi|237758532|gb|ACR17782.1| holliday junction DNA helicase [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 374

 Score =  350 bits (898), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 164/329 (49%), Positives = 223/329 (67%), Gaps = 1/329 (0%)

Query: 6   GLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
             +      +DAD  L LRPR+L+EF GQ +    L++ +  AKAR    DH+L  GPPG
Sbjct: 39  RPVDPTAQSDDADAELSLRPRSLDEFIGQSKVREQLELVLSGAKARRVVPDHILLAGPPG 98

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTT+A ++A+E+G + R TSGP + K GDLAA+L+NL + DVLFIDEIHR++   EE+
Sbjct: 99  LGKTTMAMIIAQEMGTSLRMTSGPALEKTGDLAAMLSNLMEGDVLFIDEIHRMARPAEEM 158

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LY AMEDF++D++VG+GP A S+ ++L  FTL+ ATTR G+LT PL+DRFG   ++ FY 
Sbjct: 159 LYMAMEDFRIDVIVGKGPGATSIPLDLPPFTLVGATTRAGMLTGPLRDRFGFTAQMEFYS 218

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
             DL  +V R A+L  + +  +AA EIA RSRGTPRIA RLLRRVRD+A+V     IT E
Sbjct: 219 AADLTKVVTRAARLLDIDIKADAAKEIASRSRGTPRIANRLLRRVRDYADVHSGGVITVE 278

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
            A AALL   +D+ G D+LD   L  + R  GGGPVG+ T++  + E    +E++ EPY+
Sbjct: 279 AAKAALLVFDVDEKGLDRLDRAVLDALVRGHGGGPVGVSTLALAVGEEPTTVEEVCEPYL 338

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           I+ G I RTPRGR+    AW+H G++ P 
Sbjct: 339 IRAGMIARTPRGRVATAEAWKHQGLEPPE 367


>gi|310822968|ref|YP_003955326.1| holliday junction ATP-dependent DNA helicase ruvb [Stigmatella
           aurantiaca DW4/3-1]
 gi|309396040|gb|ADO73499.1| Holliday junction ATP-dependent DNA helicase RuvB [Stigmatella
           aurantiaca DW4/3-1]
          Length = 359

 Score =  350 bits (898), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 176/329 (53%), Positives = 232/329 (70%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
            + L    +  +    + LRPRT EE+ GQ      LKV++ AA  R +ALDH LF GPP
Sbjct: 22  SDTLSEEVLGDDVRLEASLRPRTFEEYVGQDAVVEKLKVYVRAAGQRRDALDHCLFSGPP 81

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKT+LA ++A ELGV    TSGP + + GDLA LLTNL +RDVLFIDEIHRL+  VEE
Sbjct: 82  GLGKTSLAHIIASELGVGIHVTSGPALERKGDLAGLLTNLNERDVLFIDEIHRLNAAVEE 141

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
            LYPAMEDF+LD+ +  GP+AR++KI+L  FTLI ATTR GLLT+PL+DRF I  RL++Y
Sbjct: 142 YLYPAMEDFRLDITIDTGPAARAMKIDLPPFTLIGATTRTGLLTSPLRDRFQIQERLDYY 201

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           E + L+ I+ R A++ G+ +  +A+ EI+ RSRGTPRI+ RLLRR+RDFA+V     ITR
Sbjct: 202 EPKYLEMILNRSARILGVPLERDASKEISTRSRGTPRISNRLLRRLRDFAQVEGEGHITR 261

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           E+A  +L RL +D  G D +D + L  I   FGGGPVG+ETI+A + E RD+IED+ EPY
Sbjct: 262 ELARVSLDRLGVDASGLDSMDRKILLTIIDKFGGGPVGVETIAASVGEQRDSIEDVYEPY 321

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++Q+GF+QRTPRGR+    A+ +     P
Sbjct: 322 LLQEGFLQRTPRGRMATHRAYGYFKRAPP 350


>gi|298372128|ref|ZP_06982118.1| holliday junction DNA helicase RuvB [Bacteroidetes oral taxon 274
           str. F0058]
 gi|298275032|gb|EFI16583.1| holliday junction DNA helicase RuvB [Bacteroidetes oral taxon 274
           str. F0058]
          Length = 338

 Score =  350 bits (898), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 180/322 (55%), Positives = 231/322 (71%), Gaps = 1/322 (0%)

Query: 8   LSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           +   +++ DADI   LRP    +F GQ +   NL VF+EAAK RAE+LDHVL  GPPGLG
Sbjct: 5   IREQITKSDADIEKALRPLVFADFNGQGKIVENLSVFVEAAKMRAESLDHVLLHGPPGLG 64

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTTL+ ++A ELGV  + TSGPV+ K GDLA LLT+LE  DVLFIDEIHRLS IVEE LY
Sbjct: 65  KTTLSAIIANELGVGLKMTSGPVLDKPGDLAGLLTSLEKNDVLFIDEIHRLSPIVEEYLY 124

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            AMEDF++D+M+ +GPSARS++I+L  FTL+ ATTR GLLT+PL+ RFGI     +Y+  
Sbjct: 125 SAMEDFRIDIMIDKGPSARSIQIDLEPFTLVGATTRSGLLTSPLRARFGINCHFEYYDES 184

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
            L+ IV R AKL G+  + EAA EIA+RSRGTPR+A  LLRRVRDFA+V     I   I 
Sbjct: 185 ILRGIVLRSAKLLGVGCSQEAAGEIALRSRGTPRVANALLRRVRDFAQVRGNGDIDLTIT 244

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
             +L  L IDK G D++D + L  +   F GGPVG+ TI+  L E    IE++ EP++I+
Sbjct: 245 KYSLEALNIDKYGLDEIDNKILLTVIDKFHGGPVGLNTIATALGEDAGTIEEVYEPFLIK 304

Query: 307 QGFIQRTPRGRLLMPIAWQHLG 328
           +GFI+RTPRGR +MP+A++HLG
Sbjct: 305 EGFIKRTPRGREVMPLAYEHLG 326


>gi|218295182|ref|ZP_03496018.1| Holliday junction DNA helicase RuvB [Thermus aquaticus Y51MC23]
 gi|218244385|gb|EED10910.1| Holliday junction DNA helicase RuvB [Thermus aquaticus Y51MC23]
          Length = 323

 Score =  350 bits (898), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 179/312 (57%), Positives = 230/312 (73%), Gaps = 1/312 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+TL+E+ GQ      LKV++EAAKAR E L+H+L  GPPGLGKTTLA V+A ELGVN
Sbjct: 7   LRPKTLDEYIGQERLKKKLKVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAYELGVN 66

Query: 82  FRSTSGPVIAKAGDLAALLTN-LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
            R+TSGP I K GDLAA+L N LE+ D+LFIDEIHRLS   EE LYPAMEDF +D+++G+
Sbjct: 67  IRTTSGPAIEKPGDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQ 126

Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
           GP+AR+V++ L RFTLI ATTR GL+T PL+ RFGI   L +Y +E+L   V+R A+L G
Sbjct: 127 GPAARTVRLELPRFTLIGATTRPGLITAPLRSRFGIVEHLEYYTLEELMEGVKRDARLLG 186

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGF 260
           + +T+EAA EIA RSRGT RIA RL RRVRDFA+VA  + IT E A  AL  L +D++G 
Sbjct: 187 VGITEEAAREIAKRSRGTMRIAKRLFRRVRDFAQVAGEEVITGERAKEALNALGLDELGL 246

Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320
           ++ D   L ++   FGGGPVG+ T++  LSE    +E++ EPY+IQQG I+RTPRGR+  
Sbjct: 247 EKRDREILEVLIGRFGGGPVGLGTLATALSEDPGTLEEVHEPYLIQQGLIKRTPRGRVAT 306

Query: 321 PIAWQHLGIDIP 332
             A++HLG   P
Sbjct: 307 ERAYRHLGYPPP 318


>gi|300775969|ref|ZP_07085828.1| crossover junction ATP-dependent DNA helicase RuvB
           [Chryseobacterium gleum ATCC 35910]
 gi|300505102|gb|EFK36241.1| crossover junction ATP-dependent DNA helicase RuvB
           [Chryseobacterium gleum ATCC 35910]
          Length = 340

 Score =  350 bits (898), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 172/331 (51%), Positives = 231/331 (69%), Gaps = 4/331 (1%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           D+E      + QE+     +RP++ ++F GQ +   NL+VF+ AAK R  ALDHVL  GP
Sbjct: 8   DKENYSREELMQEEQ----IRPQSFKDFAGQRKTLENLEVFVTAAKRRGGALDHVLLHGP 63

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++A ELGVN + TSGPV+ K G LA LLTNLE+ DVLFIDEIHRLS +VE
Sbjct: 64  PGLGKTTLANIIANELGVNCKITSGPVLDKPGSLAGLLTNLEENDVLFIDEIHRLSPVVE 123

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E LY AMED+++D+M+  GP+ARSV+I L+ FTL+ ATTR G+LT P+  RFGI  RL +
Sbjct: 124 EYLYSAMEDYKIDIMLETGPNARSVQIGLNPFTLVGATTRSGMLTKPMLARFGIQSRLEY 183

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y IE L  I+QR A++ G+ + ++AA EIA RSRGTPRIA  LLRRVRDFAE+     I 
Sbjct: 184 YSIELLSMIIQRSARVLGVIIYEDAAIEIARRSRGTPRIANALLRRVRDFAEIKGNGEIE 243

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            +I   AL  L +D+ G D++D + + ++  NF G PVGI  ++  + E  + +E++ EP
Sbjct: 244 IKITKYALDSLNVDEFGLDEMDNKIMRVMIENFKGKPVGISALATSIGENPETLEEVYEP 303

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           ++IQ+GFI RTPRGR +   A++HL I  P 
Sbjct: 304 FLIQEGFIIRTPRGREVTDKAYRHLNITRPK 334


>gi|49483885|ref|YP_041109.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|57650522|ref|YP_186535.1| Holliday junction DNA helicase B [Staphylococcus aureus subsp.
           aureus COL]
 gi|87160402|ref|YP_494292.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|88195452|ref|YP_500256.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|151221755|ref|YP_001332577.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|161509867|ref|YP_001575526.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|221141090|ref|ZP_03565583.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|253732297|ref|ZP_04866462.1| Holliday junction DNA helicase B [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253733108|ref|ZP_04867273.1| Holliday junction DNA helicase B [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|257428425|ref|ZP_05604823.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257431063|ref|ZP_05607442.1| Holliday junction DNA helicase subunit RuvB [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257433749|ref|ZP_05610107.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257436664|ref|ZP_05612708.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus M876]
 gi|258450533|ref|ZP_05698595.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A5948]
 gi|262048630|ref|ZP_06021513.1| holliday junction DNA helicase [Staphylococcus aureus D30]
 gi|262051291|ref|ZP_06023515.1| holliday junction DNA helicase [Staphylococcus aureus 930918-3]
 gi|282904221|ref|ZP_06312109.1| holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus C160]
 gi|282906047|ref|ZP_06313902.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282908960|ref|ZP_06316778.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282911277|ref|ZP_06319079.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282914446|ref|ZP_06322232.1| holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus M899]
 gi|282916909|ref|ZP_06324667.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus D139]
 gi|282919415|ref|ZP_06327150.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus C427]
 gi|282920190|ref|ZP_06327915.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A9765]
 gi|282924792|ref|ZP_06332458.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus C101]
 gi|283770715|ref|ZP_06343607.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus H19]
 gi|283958401|ref|ZP_06375852.1| holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|284024697|ref|ZP_06379095.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus 132]
 gi|293503519|ref|ZP_06667366.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293510538|ref|ZP_06669243.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus M809]
 gi|293537081|ref|ZP_06671761.1| holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus M1015]
 gi|294848670|ref|ZP_06789416.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A9754]
 gi|295428216|ref|ZP_06820848.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297590816|ref|ZP_06949454.1| crossover junction ATP-dependent DNA helicase RuvB [Staphylococcus
           aureus subsp. aureus MN8]
 gi|304380762|ref|ZP_07363430.1| crossover junction ATP-dependent DNA helicase RuvB [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|56749558|sp|Q6GG63|RUVB_STAAR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|71153737|sp|Q5HFC2|RUVB_STAAC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|97190331|sp|Q2FG86|RUVB_STAA3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|123407042|sp|Q2FXT4|RUVB_STAA8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|172048927|sp|A6QHI3|RUVB_STAAE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|189046054|sp|A8Z2G9|RUVB_STAAT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|49242014|emb|CAG40712.1| Holliday junction DNA helicase [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|57284708|gb|AAW36802.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus COL]
 gi|87126376|gb|ABD20890.1| holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|87203010|gb|ABD30820.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|150374555|dbj|BAF67815.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|160368676|gb|ABX29647.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|253724086|gb|EES92815.1| Holliday junction DNA helicase B [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253728864|gb|EES97593.1| Holliday junction DNA helicase B [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|257275266|gb|EEV06753.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257278266|gb|EEV08908.1| Holliday junction DNA helicase subunit RuvB [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257281842|gb|EEV11979.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257284015|gb|EEV14138.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus M876]
 gi|257861691|gb|EEV84490.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A5948]
 gi|259160928|gb|EEW45948.1| holliday junction DNA helicase [Staphylococcus aureus 930918-3]
 gi|259163277|gb|EEW47836.1| holliday junction DNA helicase [Staphylococcus aureus D30]
 gi|269941126|emb|CBI49512.1| Holliday junction DNA helicase [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282313158|gb|EFB43554.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus C101]
 gi|282317225|gb|EFB47599.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus C427]
 gi|282319396|gb|EFB49748.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus D139]
 gi|282321627|gb|EFB51952.1| holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus M899]
 gi|282324972|gb|EFB55282.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282327224|gb|EFB57519.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282331339|gb|EFB60853.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282594538|gb|EFB99523.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A9765]
 gi|282595839|gb|EFC00803.1| holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus C160]
 gi|283460862|gb|EFC07952.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus H19]
 gi|283790550|gb|EFC29367.1| holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|290919926|gb|EFD96994.1| holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291095185|gb|EFE25450.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291466429|gb|EFF08950.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus M809]
 gi|294824696|gb|EFG41119.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus A9754]
 gi|295128574|gb|EFG58208.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297575702|gb|EFH94418.1| crossover junction ATP-dependent DNA helicase RuvB [Staphylococcus
           aureus subsp. aureus MN8]
 gi|298694920|gb|ADI98142.1| Holliday junction DNA helicase [Staphylococcus aureus subsp. aureus
           ED133]
 gi|302751469|gb|ADL65646.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
           subsp. aureus str. JKD6008]
 gi|304340699|gb|EFM06631.1| crossover junction ATP-dependent DNA helicase RuvB [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|312437892|gb|ADQ76963.1| crossover junction ATP-dependent DNA helicase RuvB [Staphylococcus
           aureus subsp. aureus TCH60]
 gi|315195544|gb|EFU25931.1| Holliday junction DNA helicase B [Staphylococcus aureus subsp.
           aureus CGS00]
 gi|315198658|gb|EFU28986.1| Holliday junction DNA helicase B [Staphylococcus aureus subsp.
           aureus CGS01]
 gi|320140472|gb|EFW32326.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus MRSA131]
 gi|320144011|gb|EFW35780.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus MRSA177]
 gi|323440806|gb|EGA98515.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus O11]
 gi|323442845|gb|EGB00470.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus O46]
 gi|329314315|gb|AEB88728.1| Holliday junction ATP-dependent DNA helicase ruvB [Staphylococcus
           aureus subsp. aureus T0131]
 gi|329728400|gb|EGG64837.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus 21189]
          Length = 334

 Score =  350 bits (898), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 167/324 (51%), Positives = 232/324 (71%), Gaps = 1/324 (0%)

Query: 5   EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E ++ +++  E+ D  L LRP  L ++ GQ    SNL+VFI+AAK R E LDHVL  GPP
Sbjct: 3   ERMVDQSMHSEETDFELSLRPTRLRQYIGQNSIKSNLEVFIKAAKLRHEPLDHVLLFGPP 62

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTL+ ++A E+ VN R+ SGP + + GDLAA+L+ L+  DVLFIDEIHRLS +VEE
Sbjct: 63  GLGKTTLSNIIANEMEVNIRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSVVEE 122

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LYPAMEDF LD+++G+G  ARS++I+L  FTL+ ATTR G LT PL+DRFG+ +RL +Y
Sbjct: 123 VLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATTRAGSLTGPLRDRFGVHLRLEYY 182

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
              DLK I+ R A++ G  + +E+A E+A RSRGTPR+A RLL+RVRDF +V   + I  
Sbjct: 183 NESDLKEIIIRTAEVLGTGIDEESAIELAKRSRGTPRVANRLLKRVRDFQQVNEDEQIYI 242

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           E    AL  L +D+ G D +D + +  I + + GGPVG++TI+  + E R  IED+ EP+
Sbjct: 243 ETTKHALGLLQVDQHGLDYIDHKMMNCIIKQYNGGPVGLDTIAVTIGEERITIEDVYEPF 302

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHL 327
           +IQ+GF++RTPRGR   P+A++H 
Sbjct: 303 LIQKGFLERTPRGRKATPLAYEHF 326


>gi|166368034|ref|YP_001660307.1| Holliday junction DNA helicase RuvB [Microcystis aeruginosa
           NIES-843]
 gi|189046037|sp|B0JY77|RUVB_MICAN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|166090407|dbj|BAG05115.1| holliday junction DNA helicase [Microcystis aeruginosa NIES-843]
          Length = 358

 Score =  350 bits (897), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 159/328 (48%), Positives = 230/328 (70%), Gaps = 2/328 (0%)

Query: 4   REGLLSRNVSQEDADISL--LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
            E LL+ N + E+ + +   +RP++LE++ GQ +  +NLKV I AAKAR EA+DH+LF G
Sbjct: 14  EENLLTPNPTIEETEKAAAEIRPQSLEDYIGQQDLKANLKVTIAAAKARQEAIDHLLFYG 73

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTT+A ++A E+GVN R T+ P + +  D+  +L NL+ RD+LFIDEIHRL+ + 
Sbjct: 74  PPGLGKTTMALILAAEMGVNCRITAAPALERPRDITGILINLQPRDILFIDEIHRLNRVT 133

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMED++LD+ +G+G +A+   I+L  FTLI ATT+VG LT+PL+DRFG+  RL 
Sbjct: 134 EELLYPAMEDYRLDVTIGKGQAAKIRSISLPPFTLIGATTKVGSLTSPLRDRFGLIQRLR 193

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY +E+L  I+ R A +  + +T+  A EIA RSRGTPRIA RLL+RVRD+ +V     I
Sbjct: 194 FYAVEELTAIILRSATIFNIPITEAGAIEIARRSRGTPRIANRLLKRVRDYVQVKGETII 253

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           + ++A   L +L +D MG D  D   L  + + F G PVG+E ++A   E    IE++ E
Sbjct: 254 SPQLAAEGLNQLNVDSMGLDWTDRLVLKTMIQQFQGKPVGLEAVAAATGEDAKTIEEVYE 313

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           PY++Q G++ RTPRGR++   A++HLG+
Sbjct: 314 PYLLQIGYLNRTPRGRVVTSAAYEHLGL 341


>gi|116333840|ref|YP_795367.1| Holliday junction DNA helicase B [Lactobacillus brevis ATCC 367]
 gi|122269473|sp|Q03R36|RUVB_LACBA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|116099187|gb|ABJ64336.1| Holliday junction DNA helicase subunit RuvB [Lactobacillus brevis
           ATCC 367]
          Length = 338

 Score =  350 bits (897), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 170/336 (50%), Positives = 224/336 (66%), Gaps = 3/336 (0%)

Query: 1   MMDREGLLSRNVSQ--EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M+D E ++S   +   ED+    LRP+ L ++ GQ      L V+I+AAK R E+LDHVL
Sbjct: 1   MVDDERVVSPETADDHEDSVEKSLRPQVLAQYIGQEPIKHELSVYIQAAKQREESLDHVL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA V+A E+GV  R+TSGP I K GDL ALL  L+  D+LFIDEIHRL 
Sbjct: 61  LYGPPGLGKTTLAMVIANEMGVQIRTTSGPAIEKPGDLVALLNELQPGDILFIDEIHRLP 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            IVEE+LY AMEDF +D++VG+GP+A  V   L  FTLI ATTR GLL+ PL+DRFGI  
Sbjct: 121 KIVEEMLYSAMEDFYIDIVVGQGPTAHPVHFPLPPFTLIGATTRAGLLSAPLRDRFGIVE 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA-H 237
            + +YE  DL+ IV R A +   A+  E A EIA+RSRGTPRIA RLL+R+RDFAEVA  
Sbjct: 181 HMAYYETTDLQEIVLRSADIFHTAIATEGAHEIALRSRGTPRIANRLLKRIRDFAEVAPD 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
              I   I D AL  L +D  G D  D++ L  +   + GGPVG+ T++A + E  + + 
Sbjct: 241 HDQIDLAIVDHALDLLRVDSAGLDATDIKLLETMIDYYNGGPVGLNTLAANIGEETETVA 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            + EPY++Q+G+++RT RGR++    +QHLG  +P 
Sbjct: 301 AMYEPYLLQRGYLKRTARGRVVTATGYQHLGRTMPD 336


>gi|262341251|ref|YP_003284106.1| Holliday junction DNA helicase RuvB [Blattabacterium sp. (Blattella
           germanica) str. Bge]
 gi|262272588|gb|ACY40496.1| Holliday junction DNA helicase RuvB [Blattabacterium sp. (Blattella
           germanica) str. Bge]
          Length = 322

 Score =  350 bits (897), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 171/314 (54%), Positives = 228/314 (72%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            L P+T+++F GQ +   NLK+FI+AAK R +ALDH+LF GPPGLGKTTLA +VA EL V
Sbjct: 8   SLNPKTIQDFVGQNDILENLKIFIQAAKKRKDALDHILFHGPPGLGKTTLAHIVANELHV 67

Query: 81  NFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           N   TSG V+ K GDLA LL +L+  DV+FIDEIHRLS IVEE LY AME++++D+++  
Sbjct: 68  NITVTSGSVLDKPGDLAGLLIHLKLNDVIFIDEIHRLSPIVEEYLYSAMENYKIDIIIDS 127

Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
           G +A+SV+I+LS FTLI ATTR GLLT P++ RFGI  RL++YE + LK IV R AKL  
Sbjct: 128 GSNAKSVQIDLSPFTLIGATTRSGLLTAPMRSRFGINFRLSYYEKKFLKNIVNRSAKLLN 187

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGF 260
           + +T++A+ EIA RSRGTPRIA  LLRR+RDFA++    TI   I +  L  L +DK G 
Sbjct: 188 IPITEKASYEIANRSRGTPRIANALLRRIRDFAQIKGNGTIDLNICNLGLQALNVDKNGL 247

Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320
           D++D R L  I  +F GGPVGI TI+  +SE  D IE++ EP++I++G++ RTPRGR   
Sbjct: 248 DEMDNRILLSIIDHFKGGPVGINTIATAVSENSDTIEEVYEPFLIKEGYLIRTPRGRKAT 307

Query: 321 PIAWQHLGIDIPHR 334
            +A+QHL  D+  +
Sbjct: 308 KLAYQHLKRDLKKK 321


>gi|238855609|ref|ZP_04645910.1| holliday junction DNA helicase RuvB [Lactobacillus jensenii 269-3]
 gi|260665331|ref|ZP_05866179.1| Holliday junction DNA helicase RuvB [Lactobacillus jensenii
           SJ-7A-US]
 gi|282933017|ref|ZP_06338411.1| holliday junction DNA helicase RuvB [Lactobacillus jensenii 208-1]
 gi|313473094|ref|ZP_07813578.1| holliday junction DNA helicase RuvB [Lactobacillus jensenii 1153]
 gi|238831753|gb|EEQ24089.1| holliday junction DNA helicase RuvB [Lactobacillus jensenii 269-3]
 gi|239528669|gb|EEQ67670.1| holliday junction DNA helicase RuvB [Lactobacillus jensenii 1153]
 gi|260560835|gb|EEX26811.1| Holliday junction DNA helicase RuvB [Lactobacillus jensenii
           SJ-7A-US]
 gi|281302871|gb|EFA95079.1| holliday junction DNA helicase RuvB [Lactobacillus jensenii 208-1]
          Length = 337

 Score =  350 bits (897), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 163/335 (48%), Positives = 223/335 (66%), Gaps = 2/335 (0%)

Query: 1   MMDREGLL--SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           MMD +  +       ++  D   LRP++  ++ GQ    S ++++I+AAK R EALDHVL
Sbjct: 1   MMDEDSRVVAGEEEQEDLQDELSLRPQSFSQYIGQKRVKSEMEIYIQAAKKRDEALDHVL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTT+A V+A ELGVN ++TSGP I +AGDL ALL++L+  DVLFIDEIHRL+
Sbjct: 61  LYGPPGLGKTTMAFVIANELGVNLKNTSGPAIERAGDLVALLSDLDPGDVLFIDEIHRLA 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
             +EEILY AMED+ +D++VGEG ++ +V + L  FTLI ATTR G L+ PL+DRFGI  
Sbjct: 121 KPIEEILYSAMEDYYVDIVVGEGSTSHAVHVPLPPFTLIGATTRAGDLSAPLRDRFGIVE 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
            + +Y I DL+ I+QR +++    +  EAA E+A RSRGTPR+A RLL+RVRD+A+V   
Sbjct: 181 HMQYYTIGDLEKIIQRSSEVFSTKIGKEAAHELARRSRGTPRVANRLLKRVRDYAQVKEE 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             I+      AL +L +D  G D  D + L  I   + GGPVGI T++A + E  D IE 
Sbjct: 241 NKISLATTKYALDQLQVDNEGLDLTDRKILRTIIEAYHGGPVGIRTLAANIGEDTDTIEA 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           + EPY++Q  FI  TPRGR+    A+  LGI +P 
Sbjct: 301 VYEPYLLQHKFITMTPRGRVATQKAYLQLGIPLPE 335


>gi|218961946|ref|YP_001741721.1| Holliday junction helicase, subunit B [Candidatus Cloacamonas
           acidaminovorans]
 gi|167730603|emb|CAO81515.1| Holliday junction helicase, subunit B [Candidatus Cloacamonas
           acidaminovorans]
          Length = 338

 Score =  350 bits (897), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 170/328 (51%), Positives = 235/328 (71%), Gaps = 1/328 (0%)

Query: 5   EGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E + + +   ED ++   LRPRTL+EF GQ      L + I+AAK R E+LDH+L  GPP
Sbjct: 3   ERINNPDKLNEDVELDRALRPRTLKEFIGQTHIKELLDISIKAAKLRGESLDHILLYGPP 62

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++ARE+GVN   +SGPVI K  DLA +LTNL+  + LFIDEIHRLS I+EE
Sbjct: 63  GLGKTTLAGIIAREMGVNITVSSGPVIEKPSDLAGILTNLQRHETLFIDEIHRLSHIIEE 122

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
            +YPAMEDF++++++  GP++R++KI L  FTL+ ATTR GLLT PL+DRFGI +RL++Y
Sbjct: 123 YIYPAMEDFEMEIILDSGPNSRTLKIPLEHFTLVGATTRAGLLTPPLRDRFGIILRLDYY 182

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           + E +  I++R A+L  +   D+   EIA RSRGTPRIA RLLRRVRD+A++     IT 
Sbjct: 183 DQESIAQIIRRSARLLNIPTEDDGVQEIARRSRGTPRIANRLLRRVRDYAQIKGEGIITL 242

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           +IA +AL  L +D  G D++D R LT I  N+ GGPVGI+TI+  + E    IE++ EPY
Sbjct: 243 DIALSALQMLQVDNAGLDEMDKRILTTIIENYNGGPVGIKTIATAIGEDSGTIEEIFEPY 302

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           ++QQGF++R+P+GR +   A++HLG+  
Sbjct: 303 LVQQGFLERSPQGRKVTFKAYKHLGLTP 330


>gi|300811582|ref|ZP_07092066.1| Holliday junction DNA helicase RuvB [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
 gi|300497442|gb|EFK32480.1| Holliday junction DNA helicase RuvB [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
          Length = 336

 Score =  350 bits (897), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 168/332 (50%), Positives = 232/332 (69%), Gaps = 1/332 (0%)

Query: 2   MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M  E L S+  ++ +  + L LRP+ L ++ GQ     +++V+I+AA+ R EALDHVL  
Sbjct: 1   MTEEHLTSQEAAEGEEAVELSLRPQLLSQYIGQGHVKKDMEVYIQAARQRDEALDHVLLY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA V+A E GV+ +STSGP I +AGDL ALLT+LE  DVLFIDEIHRL+  
Sbjct: 61  GPPGLGKTTLAFVIANESGVSLKSTSGPAIERAGDLVALLTDLEPGDVLFIDEIHRLAKP 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LY AMEDF +D++VGEG +  ++ + L  FTLI ATT  G L+ PL+DRFGI   +
Sbjct: 121 VEEVLYSAMEDFYIDIVVGEGQTTHAIHLPLPPFTLIGATTLAGQLSAPLRDRFGIVEHM 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y++EDL+ I+ R +++    ++ +AA E+A RSRGTPR+A RLL+RVRDFAEV   K 
Sbjct: 181 QYYQVEDLEKIILRSSEVFHTKISPQAAHELARRSRGTPRVANRLLKRVRDFAEVKGEKE 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I+ E    AL +L +D  G DQ D + L  +  ++GGGPVGI T+++ + E R+ IE L 
Sbjct: 241 ISLETTAMALKQLQVDSAGLDQTDRKLLRTMILSYGGGPVGIRTLASNIGEDRETIESLY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EPY++Q GFI  TPRGR++   A+Q L + +P
Sbjct: 301 EPYLLQNGFIVMTPRGRVVTQKAYQQLNLPLP 332


>gi|104774419|ref|YP_619399.1| Holliday junction DNA helicase RuvB [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|116514517|ref|YP_813423.1| Holliday junction DNA helicase RuvB [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
 gi|122274751|sp|Q048Y7|RUVB_LACDB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|123378384|sp|Q1G941|RUVB_LACDA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|103423500|emb|CAI98402.1| Holliday junction DNA helicase RuvB [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|116093832|gb|ABJ58985.1| Holliday junction DNA helicase subunit RuvB [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
 gi|325126229|gb|ADY85559.1| Helicase Holliday junction [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
 gi|325685739|gb|EGD27817.1| crossover junction ATP-dependent DNA helicase RuvB [Lactobacillus
           delbrueckii subsp. lactis DSM 20072]
          Length = 336

 Score =  350 bits (897), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 170/332 (51%), Positives = 233/332 (70%), Gaps = 1/332 (0%)

Query: 2   MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M  E L S+  ++ +  + L LRP+ L ++ GQ     +++V+I+AA+ R EALDHVL  
Sbjct: 1   MTEEHLTSQEAAEGEEAVELSLRPQLLSQYIGQGHVKKDMEVYIQAARQRDEALDHVLLY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA V+A ELGVN +STSGP I +AGDL ALLT+LE  DVLFIDEIHRL+  
Sbjct: 61  GPPGLGKTTLAFVIANELGVNLKSTSGPAIERAGDLVALLTDLEPGDVLFIDEIHRLAKP 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LY AMEDF +D++VGEG +  ++ + L  FTLI ATT  G L+ PL+DRFGI   +
Sbjct: 121 VEEVLYSAMEDFYIDIVVGEGQTTHAIHLPLPPFTLIGATTLAGQLSAPLRDRFGIVEHM 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y++EDL+ I+ R +++    ++ +AA E+A RSRGTPR+A RLL+RVRDFAEV   K 
Sbjct: 181 QYYQVEDLEKIILRSSEVFHTKISPQAAHELARRSRGTPRVANRLLKRVRDFAEVKGEKE 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I+ E    AL +L +D  G DQ D + L  +  ++GGGPVGI T+++ + E R+ IE L 
Sbjct: 241 ISLETTAMALKQLQVDSAGLDQTDRKLLRTMILSYGGGPVGIRTLASNIGEDRETIESLY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EPY++Q GFI  TPRGR++   A+Q L + +P
Sbjct: 301 EPYLLQNGFIVMTPRGRVVTQKAYQQLNLPLP 332


>gi|42527419|ref|NP_972517.1| Holliday junction DNA helicase RuvB [Treponema denticola ATCC
           35405]
 gi|47606091|sp|P61538|RUVB_TREDE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|41818004|gb|AAS12428.1| Holliday junction DNA helicase RuvB [Treponema denticola ATCC
           35405]
          Length = 343

 Score =  350 bits (897), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 161/333 (48%), Positives = 222/333 (66%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D   ++       D     LRPR+L +F GQ +A  NL VFI+AA+ R E+LDH+  +
Sbjct: 1   MSDDFEVVRPEEQAGDEKDRDLRPRSLVDFQGQTKAKENLSVFIKAARERGESLDHLFLI 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ+ A ELGV+F+ T  P + K  DLA +LT L +R V FIDEIHRL   
Sbjct: 61  GPPGLGKTTLAQITANELGVDFKVTGAPALDKPKDLAGILTTLTERSVFFIDEIHRLKPA 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EE+LY AMED++LD ++G+GP AR+V+I +  FTL+ ATTR G++++PL  RFGI  R 
Sbjct: 121 IEEMLYIAMEDYELDWIIGQGPGARTVRIPIPPFTLVGATTRAGMVSSPLISRFGIVQRF 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  E+L +I+ R A +  + +  +AA  +A  SRGTPR+A RLLRR+RDFA+VA   +
Sbjct: 181 EFYSHEELASIISRSASILEIEIEKKAAIALARCSRGTPRVANRLLRRMRDFAQVAGKSS 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I      A L +L ID +G +  D + L  I  N+ GGPVG ET++  + E +D +ED  
Sbjct: 241 IDEMTVAAGLKQLNIDGLGLETYDRQILRSIIENYSGGPVGAETLAISIGESQDTLEDYY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY+IQ G +QRTPRGR++   A++HLG++ P 
Sbjct: 301 EPYLIQSGLLQRTPRGRMVTLKAYEHLGLNPPK 333


>gi|269926044|ref|YP_003322667.1| Holliday junction DNA helicase RuvB [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269789704|gb|ACZ41845.1| Holliday junction DNA helicase RuvB [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 354

 Score =  350 bits (897), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 166/332 (50%), Positives = 226/332 (68%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M +  +      ++D   + +RP+ L+E+ GQ +    +KV IEAAKAR EA+DH+L  G
Sbjct: 1   MLQRAIDPTKYPEDDIQEATVRPKRLDEYIGQDQIKDRVKVIIEAAKARGEAIDHILLYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+GV   STSGP I + GD+A++L+ L+  +VLFIDEIHRL   V
Sbjct: 61  PPGLGKTTLATIIANEMGVKIHSTSGPAIERPGDVASILSKLQPFEVLFIDEIHRLPRPV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMEDF++D + G+GP+A +V + L  FTLI ATTR+ LL++PL+ RFG   RL 
Sbjct: 121 EEMLYSAMEDFKVDFVYGKGPNAGTVTLPLPPFTLIGATTRLALLSSPLRGRFGDIFRLE 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           + +I+ +  IV+R A +  + +TDE A EIA RSRGTPR+A RLLRRVRD+A+V     I
Sbjct: 181 YQDIDSMAAIVKRAANILKVGITDEGALEIARRSRGTPRVAIRLLRRVRDYAQVRADHLI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
             E A  AL    +D++G D++D R L  I   F GGPVG+ET++A +SE  D I D+ E
Sbjct: 241 DHETACKALDIQGVDELGLDEVDRRILLAIIEKFDGGPVGLETLAASISEEPDTIMDVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           PY++  GFIQRTPRGR+    A+ HL I  P 
Sbjct: 301 PYLLILGFIQRTPRGRVATRRAYDHLSIPYPE 332


>gi|226306412|ref|YP_002766372.1| Holliday junction DNA helicase RuvB [Rhodococcus erythropolis PR4]
 gi|259495675|sp|C0ZZ48|RUVB_RHOE4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|226185529|dbj|BAH33633.1| Holliday junction DNA helicase RuvB [Rhodococcus erythropolis PR4]
          Length = 365

 Score =  350 bits (897), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 159/332 (47%), Positives = 226/332 (68%), Gaps = 1/332 (0%)

Query: 2   MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
            D E  +S  +   D D+   LRP++L++F GQ      L++ +  AK R    DH+L  
Sbjct: 9   FDDESQVSAELVAGDGDVEASLRPKSLDDFIGQPRVREQLQLVLTGAKLRGSTPDHILMS 68

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKT++A ++A ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++  
Sbjct: 69  GPPGLGKTSMAMIIAGELGSSLRLTSGPALERAGDLAAMLSNLVEGDVLFIDEIHRIARP 128

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            EE+LY AMEDF++D++VG+GP A S+ + ++ FTL+ ATTR G LT PL+DRFG    +
Sbjct: 129 AEEMLYLAMEDFRVDVVVGKGPGATSIPLEVAPFTLVGATTRSGALTGPLRDRFGFTAHM 188

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           +FYE E+L+ I+ R A + G+ +  +A  EIA RSRGTPRIA RLLRRVRDFAEV     
Sbjct: 189 DFYEPEELQQILMRSAGILGVNLEVDAGAEIARRSRGTPRIANRLLRRVRDFAEVRADGI 248

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +T ++A AAL    +D++G D+LD   L+ + R+FGGGPVG+ T++  + E    +E++ 
Sbjct: 249 VTMDVAQAALAVYDVDQLGLDRLDRSVLSALVRSFGGGPVGVSTLAVAVGEEPSTVEEVC 308

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EP++++ G I RTPRGR+    AW  LG+  P
Sbjct: 309 EPFLVRAGMIARTPRGRVATAAAWTQLGMTPP 340


>gi|325283973|ref|YP_004256514.1| Holliday junction ATP-dependent DNA helicase ruvB [Deinococcus
           proteolyticus MRP]
 gi|324315782|gb|ADY26897.1| Holliday junction ATP-dependent DNA helicase ruvB [Deinococcus
           proteolyticus MRP]
          Length = 330

 Score =  350 bits (897), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 169/317 (53%), Positives = 224/317 (70%), Gaps = 1/317 (0%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +++ + LRPR+L E+ GQ +    L V+++AA+ R EALDH L  GPPGLGKTTLA ++A
Sbjct: 5   ESNDAALRPRSLTEYVGQAKLKDKLGVYLQAARGRGEALDHTLLFGPPGLGKTTLAHIIA 64

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTN-LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
            ELGVN R TSGP I K GDLAA+LTN LE+ DVLFIDEIHRL  + EE LYPAMEDF+L
Sbjct: 65  YELGVNIRVTSGPAIEKPGDLAAILTNSLEEGDVLFIDEIHRLGRVAEEHLYPAMEDFKL 124

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D+++G+GP+AR++++ L RFTL+ ATTR GL+T P++ RFGI   L +Y  E++   + R
Sbjct: 125 DIVLGQGPAARTIELPLPRFTLVGATTRPGLITAPMRSRFGIIEHLEYYTAEEIAQNLLR 184

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A+L G  + + AA EI  RSRGT RIA RLLRRVRDF EVA    I+ E A  AL +L 
Sbjct: 185 DARLLGFDLDEAAALEIGGRSRGTMRIAKRLLRRVRDFTEVAGEPCISLERAHDALDKLG 244

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D  G D  D +YL  +   F GGPVG++T++  +SE    +ED+ EP++IQ GFI+RTP
Sbjct: 245 LDSAGLDDRDKKYLETLIHRFAGGPVGLDTLATAISEDALTLEDVYEPFLIQLGFIKRTP 304

Query: 315 RGRLLMPIAWQHLGIDI 331
           RGR+    A+ HLG+  
Sbjct: 305 RGRVATAHAYDHLGLPP 321


>gi|315221657|ref|ZP_07863574.1| Holliday junction DNA helicase RuvB [Streptococcus anginosus F0211]
 gi|315189233|gb|EFU22931.1| Holliday junction DNA helicase RuvB [Streptococcus anginosus F0211]
          Length = 332

 Score =  350 bits (897), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 170/323 (52%), Positives = 229/323 (70%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +  E+     LRP+ L E+ GQ +  + LK+FIEAAK R EALDH L  GPPGLGKTT+A
Sbjct: 10  MGDEELVERTLRPQYLREYIGQDKVKNQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMA 69

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            V+A ELGVN + TSGPVI KAGDL A+L +LE  DVLFIDEIHRL + VEE+LY AMED
Sbjct: 70  FVIANELGVNLKQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMED 129

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F +D+M+G G ++RSV ++L  FTLI ATTR G+L+NPL+ RFGI   + +YE  DL  I
Sbjct: 130 FYIDIMIGTGEASRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYEETDLTEI 189

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           V+R A++  + +T EAA E+A+RSRGTPRIA RLL+RVRDFA++     I  +I D AL 
Sbjct: 190 VERTAEIFEMEITHEAAEELALRSRGTPRIANRLLKRVRDFAQIMGNGLIDDQITDQALT 249

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L +D+ G D +D + L  +   +GGGPVG+ T+S  ++E ++ +ED+ EPY+IQ+GF+ 
Sbjct: 250 MLDVDQEGLDYVDQKILKTMIEVYGGGPVGLGTLSVNIAEEQETVEDMYEPYLIQKGFVM 309

Query: 312 RTPRGRLLMPIAWQHLGIDIPHR 334
           RT  GR+    A++HLG +   +
Sbjct: 310 RTRTGRVATRKAYEHLGYEYLEK 332


>gi|34763187|ref|ZP_00144153.1| Holliday junction DNA helicase ruvB [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|27887156|gb|EAA24261.1| Holliday junction DNA helicase ruvB [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
          Length = 338

 Score =  350 bits (897), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 162/324 (50%), Positives = 228/324 (70%), Gaps = 1/324 (0%)

Query: 5   EGLLSR-NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E ++S   +  E      LRP++ +E+ GQ      + + I+AA+ R   +DH+L  GPP
Sbjct: 2   ERIISELEMPNEVEIQKSLRPKSFDEYIGQENLKEKMSISIKAAQKRNMVVDHILLYGPP 61

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA V+A E+  N + TSGP++ KAGDLAA+LT+LE+ D+LFIDEIHRL+  VEE
Sbjct: 62  GLGKTTLAGVIANEMKANLKITSGPILEKAGDLAAILTSLEENDILFIDEIHRLNSTVEE 121

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILYPAMED +LD+++G+GPSA+S++I L  FTLI ATTR GLL+ PL+DRFG+  ++ +Y
Sbjct: 122 ILYPAMEDGELDIIIGKGPSAKSIRIELPPFTLIGATTRAGLLSAPLRDRFGVSHKMEYY 181

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
              ++K+I+ RGAK+ G+ + ++ A EI+ RSRGTPRIA RLL+RVRD+ E+    TI +
Sbjct: 182 NENEIKSIIIRGAKILGVKINEDGAIEISKRSRGTPRIANRLLKRVRDYCEIKGNGTIDK 241

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
             A  AL  L +D  G D LD   +  I  N+ GGPVGIET+S  L E R  +E++ EPY
Sbjct: 242 LSAKNALDMLGVDSNGLDDLDRNIINSIIENYDGGPVGIETLSLLLGEDRRTLEEVYEPY 301

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHL 327
           +++ GF++RT RGR++ P A+QH 
Sbjct: 302 LVKIGFLKRTNRGRIVTPKAYQHF 325


>gi|119716614|ref|YP_923579.1| Holliday junction DNA helicase RuvB [Nocardioides sp. JS614]
 gi|171704606|sp|A1SJA7|RUVB_NOCSJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|119537275|gb|ABL81892.1| Holliday junction DNA helicase subunit RuvB [Nocardioides sp.
           JS614]
          Length = 360

 Score =  349 bits (896), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 164/324 (50%), Positives = 221/324 (68%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           +     E A  + LRPRTL+E  GQV     L + +EAA+ R  A DHVL  GPPGLGKT
Sbjct: 22  AEADGDERAVEAALRPRTLDEVVGQVRVRDQLGLVLEAARRRGRAPDHVLLSGPPGLGKT 81

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           TLA ++A E+G   R TSGP I  AGDLAA+L+ + + DVLF+DEIHR+S   EE+LY A
Sbjct: 82  TLAMIIASEMGAPLRLTSGPAITHAGDLAAILSGMNEGDVLFVDEIHRMSRPAEEMLYMA 141

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           MEDF++D+++G+GP A ++ + +  FTL+ ATTR GLL  PL+DRFG    L FYE ++L
Sbjct: 142 MEDFRVDVVIGKGPGATAIPLEIPPFTLVGATTRAGLLPGPLRDRFGFTAHLEFYEPDEL 201

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             IVQR A+L  + V  +   EIA RSRGTPRIA RLLRRVRDFA+V     +T  +A  
Sbjct: 202 DLIVQRSARLLDVHVLPDGTAEIASRSRGTPRIANRLLRRVRDFAQVRADGVVTLPVAQD 261

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL    +D++G D+LD   L ++ R FGGGPVGI T++  + E R+ +E++ EP++++ G
Sbjct: 262 ALDLYEVDQLGLDRLDRGVLDVLCRRFGGGPVGISTLAVAVGEERETVEEVAEPFLVRNG 321

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIP 332
           F+ RTPRGR+  P AW+HLG+  P
Sbjct: 322 FLARTPRGRVATPAAWEHLGLTAP 345


>gi|285808236|gb|ADC35770.1| Holliday junction DNA helicase B [uncultured bacterium 293]
          Length = 341

 Score =  349 bits (896), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 181/332 (54%), Positives = 234/332 (70%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M +   + +R +  E +    LRPR L E+ GQ +  +NL+V IEAA +R EALDHVL  
Sbjct: 1   MSEPRLVSARTLEGELSLDQSLRPRRLTEYVGQAQVVANLRVAIEAANSRGEALDHVLLF 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPG+GKT+LA V+A ELG   ++T+GP+I +AGDLAALLT LE R+VLF+DEIHRL   
Sbjct: 61  GPPGVGKTSLAHVIAAELGATIKATAGPIIERAGDLAALLTALEPREVLFVDEIHRLDAR 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILYPA+ED+ LDLM+G GP ARS+KI L  FTL+ ATTR GLLT PL+ RFGI  RL
Sbjct: 121 VEEILYPALEDYSLDLMIGSGPGARSMKIPLKPFTLVGATTRAGLLTAPLRARFGIVHRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           +FY   +L+ IV R A++ G+ +    A EIA R+RGTPRIA RLLRRVRDFA+V     
Sbjct: 181 DFYSQPELEFIVTRSAQILGVPIDAAGAAEIARRARGTPRIANRLLRRVRDFAQVRAEGA 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           IT  +A  AL  L +D+ GFD++D + L  I   FGGGPVG+  ++A +SE  DAIE++ 
Sbjct: 241 ITLAVAQQALALLEVDESGFDEVDRKLLLTIIDKFGGGPVGLGALAAAISEDADAIEEMY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EP+++Q GFI RTPRGR+    A++HL    P
Sbjct: 301 EPFLLQIGFIDRTPRGRVATRRAYEHLARVPP 332


>gi|254302939|ref|ZP_04970297.1| crossover junction DNA helicase RuvB [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
 gi|148323131|gb|EDK88381.1| crossover junction DNA helicase RuvB [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
          Length = 338

 Score =  349 bits (896), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 161/324 (49%), Positives = 227/324 (70%), Gaps = 1/324 (0%)

Query: 5   EGLLSR-NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E ++S   +  E      LRP++ +E+ GQ      + + I+AA+ R   +DH+L  GPP
Sbjct: 2   ERIISEFEMPNEVEIQKSLRPKSFDEYIGQENLKEKMNISIKAAQKRNMVVDHILLYGPP 61

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA V+A E+  N + TSGP++ KAGDLAA+LT+LE+ D+LFIDEIHRL+  VEE
Sbjct: 62  GLGKTTLAGVIANEMKANLKITSGPILEKAGDLAAILTSLEENDILFIDEIHRLNSTVEE 121

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILYPAMED +LD+++G+GPSA+S++I L  FTLI ATTR GLL+ PL+DRFG+  ++ +Y
Sbjct: 122 ILYPAMEDGELDIIIGKGPSAKSIRIELPPFTLIGATTRAGLLSAPLRDRFGVSHKMEYY 181

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
              ++K+I+ RGAK+ G+ + ++ A EI+ RSRGTPRIA RLL+RVRD+ E+     I +
Sbjct: 182 NENEIKSIIIRGAKILGVKINEDGAIEISKRSRGTPRIANRLLKRVRDYCEIKGNGVIDK 241

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
             A  AL  L +D  G D LD   +  I  N+ GGPVGIET+S  L E R  +E++ EPY
Sbjct: 242 LSAKNALDMLGVDSNGLDDLDRNIINSIIENYDGGPVGIETLSLLLGEDRRTLEEVYEPY 301

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHL 327
           +++ GF++RT RGR++ P A+QH 
Sbjct: 302 LVKIGFLKRTNRGRVVTPKAYQHF 325


>gi|289674672|ref|ZP_06495562.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv.
           syringae FF5]
          Length = 315

 Score =  349 bits (896), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 183/298 (61%), Positives = 231/298 (77%)

Query: 37  CSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDL 96
              +++FI+AA+ R+EALDH L  GPPGLGKTTLA ++A+E+GV+ +STSGPV+ + GDL
Sbjct: 1   REQMELFIQAARGRSEALDHTLIFGPPGLGKTTLANIIAQEMGVSIKSTSGPVLERPGDL 60

Query: 97  AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTL 156
           AA+LTNLE  DVLFIDEIHRLS IVEE+LYPAMEDFQLD+M+GEGP+ARS+K++L  FTL
Sbjct: 61  AAILTNLEPNDVLFIDEIHRLSPIVEEVLYPAMEDFQLDIMIGEGPAARSIKLDLPPFTL 120

Query: 157 IAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSR 216
           + ATTR G+LTNPL+DRFGI  RL FY I DL TIV R A + GL +  + A EIA R+R
Sbjct: 121 VGATTRAGMLTNPLRDRFGIVQRLEFYNIADLSTIVSRSAGILGLVIEPQGAFEIARRAR 180

Query: 217 GTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFG 276
           GTPRIA RLLRRVRDFAEV     ITR+ AD AL  L +D+ GFD  D R L  +   F 
Sbjct: 181 GTPRIANRLLRRVRDFAEVRGNGQITRQTADKALNLLDVDEHGFDHQDRRLLLTMIEKFD 240

Query: 277 GGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           GGPVG+++++A +SE R  IED++EPY+IQQG+I RTPRGR++   A+ H G++IP R
Sbjct: 241 GGPVGVDSLAAAISEERHTIEDVLEPYLIQQGYIMRTPRGRVVTRHAYLHFGLNIPSR 298


>gi|283769123|ref|ZP_06342028.1| Holliday junction DNA helicase RuvB [Bulleidia extructa W1219]
 gi|283104309|gb|EFC05687.1| Holliday junction DNA helicase RuvB [Bulleidia extructa W1219]
          Length = 337

 Score =  349 bits (896), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 166/327 (50%), Positives = 232/327 (70%), Gaps = 1/327 (0%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
            + L++ +    + +   LRP +L+E+ GQ     NL+++I+AA AR E+LDHVL  GPP
Sbjct: 2   EDRLVTADRLAMEQEEESLRPISLQEYIGQDRLKENLRIYIQAALAREESLDHVLLYGPP 61

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++A E+    + TSGP IAKAGDLA++L+ LE  DVLFIDEIHRL  +VEE
Sbjct: 62  GLGKTTLAHILANEMNSKIKVTSGPSIAKAGDLASILSVLEPGDVLFIDEIHRLPKVVEE 121

Query: 124 ILYPAMEDFQLDLMVG-EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           +LYPAMEDF LD+ +G +  S RS++++L  FTL+ ATTR G L++PL+DRFGI  +L +
Sbjct: 122 VLYPAMEDFVLDVTIGGDSGSVRSLRLDLPPFTLVGATTRAGDLSSPLRDRFGITSKLEY 181

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  E L  IV R A++    + ++A  EIA RSRGTPRIA RLLRR+RDFA+V +   ++
Sbjct: 182 YTQEQLAKIVARTARVLDTPIEEKAVIEIAKRSRGTPRIANRLLRRIRDFAQVLNHGYLS 241

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            EIA  AL RL +D++G D++D+RYL  I   F GGPVG+++++  +SE    +ED+ EP
Sbjct: 242 YEIARDALQRLHVDELGLDEVDIRYLKGIIERFHGGPVGLDSLANAISEETTTLEDVYEP 301

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           Y+IQ GF+ RT RGR++   A++HL I
Sbjct: 302 YLIQIGFVNRTSRGRVVTEKAYEHLHI 328


>gi|229491963|ref|ZP_04385780.1| holliday junction DNA helicase RuvB [Rhodococcus erythropolis
           SK121]
 gi|229321095|gb|EEN86899.1| holliday junction DNA helicase RuvB [Rhodococcus erythropolis
           SK121]
          Length = 365

 Score =  349 bits (896), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 159/332 (47%), Positives = 226/332 (68%), Gaps = 1/332 (0%)

Query: 2   MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
            D E  +S  +   D D+   LRP++L++F GQ      L++ +  AK R    DH+L  
Sbjct: 9   FDDESQVSAELVAGDGDVEASLRPKSLDDFIGQPRVREQLQLVLTGAKLRGSTPDHILMS 68

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKT++A ++A ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++  
Sbjct: 69  GPPGLGKTSMAMIIAGELGSSLRLTSGPALERAGDLAAMLSNLVEGDVLFIDEIHRIARP 128

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            EE+LY AMEDF++D++VG+GP A S+ + ++ FTL+ ATTR G LT PL+DRFG    +
Sbjct: 129 AEEMLYLAMEDFRVDVVVGKGPGATSIPLEVAPFTLVGATTRSGALTGPLRDRFGFTAHM 188

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           +FYE E+L+ I+ R A + G+ +  +A  EIA RSRGTPRIA RLLRRVRDFAEV     
Sbjct: 189 DFYEPEELQQILMRSAGILGVDLEVDAGAEIARRSRGTPRIANRLLRRVRDFAEVRADGI 248

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +T ++A AAL    +D++G D+LD   L+ + R+FGGGPVG+ T++  + E    +E++ 
Sbjct: 249 VTMDVAQAALAVYDVDQLGLDRLDRSVLSALVRSFGGGPVGVSTLAVAVGEEPSTVEEVC 308

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EP++++ G I RTPRGR+    AW  LG+  P
Sbjct: 309 EPFLVRAGMIARTPRGRVATAAAWTQLGMTPP 340


>gi|332365355|gb|EGJ43118.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           sanguinis SK1059]
          Length = 332

 Score =  349 bits (896), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 169/320 (52%), Positives = 229/320 (71%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +  E+     LRP+ L+E+ GQ +    LK+FIEAAK R EALDH L  GPPGLGKTT+A
Sbjct: 10  MGDEELVERTLRPQYLQEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMA 69

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            V+A ELGVN + TSGPVI K+GDL A+L +LE  DVLFIDEIHRL + VEE+LY AMED
Sbjct: 70  FVIANELGVNLKQTSGPVIEKSGDLVAILNDLEPGDVLFIDEIHRLPMAVEEVLYSAMED 129

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F +D+M+G G ++RSV ++L  FTLI ATTR G+L+NPL+ RFGI   + +YE +DL  I
Sbjct: 130 FYIDIMIGSGETSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYEADDLTEI 189

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           V+R A++  + +T EAA E+A+RSRGTPRIA RLL+RVRD+A++     I  +I D AL 
Sbjct: 190 VERTAEIFEMDITHEAAKELALRSRGTPRIANRLLKRVRDYAQIMGNGLIDDKITDQALS 249

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L +D+ G D +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GF+ 
Sbjct: 250 MLDVDQEGLDYVDQKILRTMIEVYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFVM 309

Query: 312 RTPRGRLLMPIAWQHLGIDI 331
           RT  GR+    A++HLG + 
Sbjct: 310 RTRTGRVATRKAYEHLGYEY 329


>gi|328950019|ref|YP_004367354.1| Holliday junction ATP-dependent DNA helicase ruvB [Marinithermus
           hydrothermalis DSM 14884]
 gi|328450343|gb|AEB11244.1| Holliday junction ATP-dependent DNA helicase ruvB [Marinithermus
           hydrothermalis DSM 14884]
          Length = 325

 Score =  349 bits (896), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 176/313 (56%), Positives = 225/313 (71%), Gaps = 1/313 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+TL+E+ GQ      L+V+++AAKAR E LDH+L  GPPGLGKTTLA V+A ELGVN
Sbjct: 6   LRPQTLDEYVGQTRLKEKLRVYLQAAKARGEPLDHMLLFGPPGLGKTTLAHVIANELGVN 65

Query: 82  FRSTSGPVIAKAGDLAALLTN-LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
            R TSGP I K GDLAA+LTN LE+ D+LFIDEIHRLS   EE LYPAMEDF++D+++G+
Sbjct: 66  IRVTSGPAIEKPGDLAAILTNSLEEGDILFIDEIHRLSRTAEEHLYPAMEDFKIDIVLGQ 125

Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
           GP+AR++++ L RFTLI ATTR GL+++PL+ RFGI   L FY  E+L   V R A+L G
Sbjct: 126 GPAARTLRLELPRFTLIGATTRPGLISSPLRSRFGIIEHLEFYTPEELAEGVARDARLLG 185

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGF 260
           L +  EAA EI  R+RGT RIA RL RRVRDFAEVA    +T E A  AL  L +D +G 
Sbjct: 186 LEIEHEAALEIGRRARGTMRIAKRLFRRVRDFAEVAGDPRVTLERAREALDALGLDALGL 245

Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320
           D  D + L  I   F GGPVG+ET++  LSE    +E++ EP++IQ G I+RTPRGR+  
Sbjct: 246 DARDRKILETILTRFAGGPVGLETLATALSEDPQTLEEVHEPFLIQLGLIKRTPRGRVAT 305

Query: 321 PIAWQHLGIDIPH 333
             A++HLG+ +P 
Sbjct: 306 ERAYRHLGLPVPE 318


>gi|294101861|ref|YP_003553719.1| Holliday junction DNA helicase RuvB [Aminobacterium colombiense DSM
           12261]
 gi|293616841|gb|ADE56995.1| Holliday junction DNA helicase RuvB [Aminobacterium colombiense DSM
           12261]
          Length = 352

 Score =  349 bits (896), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 172/333 (51%), Positives = 232/333 (69%), Gaps = 1/333 (0%)

Query: 2   MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M  E     ++ ++D +  L LRP +L++F GQ +    L ++++AA+ R EALDH+LF 
Sbjct: 1   MTEERTNFFDLQKKDFEEELTLRPSSLQDFVGQQKLKDKLSIYVQAARQRKEALDHILFY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A E+G   R T+GP + KAGD+AA+L+NLE  DVLFIDEIHRL   
Sbjct: 61  GPPGLGKTTLAGIIAHEMGGQLRVTTGPALEKAGDIAAILSNLEPFDVLFIDEIHRLPAN 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILYP+MEDF L ++VG+GP A ++ + L  FTL+ ATTR+GLLT+PL+ RFGI  +L
Sbjct: 121 VEEILYPSMEDFSLHIIVGKGPLANNICLTLPPFTLVGATTRLGLLTSPLRARFGIVEQL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
             Y +++   IVQRGAK+ G+ + +EAA EIA RSRGTPR+A RLL+RVRD AEV  + +
Sbjct: 181 ALYNVDETSEIVQRGAKVLGIEIEEEAAYEIARRSRGTPRVAIRLLKRVRDVAEVRQSPS 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I   +A  AL  L +D +G D  D R L +I   F GGPVG+ TI+A L+E    IED+ 
Sbjct: 241 INTAVASVALNMLGLDTLGLDDGDRRILQVIVELFDGGPVGLSTIAAALNEEGQTIEDIY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY+IQ+G I+RTPRGR      + +LG + P 
Sbjct: 301 EPYLIQKGLIERTPRGRKATRNGYLYLGKNPPE 333


>gi|224476738|ref|YP_002634344.1| Holliday junction DNA helicase RuvB [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|254767440|sp|B9DNE4|RUVB_STACT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|222421345|emb|CAL28159.1| holliday junction DNA helicase [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 338

 Score =  349 bits (896), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 165/327 (50%), Positives = 233/327 (71%), Gaps = 2/327 (0%)

Query: 2   MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD + ++ ++  ++++   L LRP  L+++ GQ    SNL+VFI+AAK R E LDHVL  
Sbjct: 1   MD-DRMVDQSQHEDESSFELSLRPHFLKQYIGQASIKSNLEVFIKAAKLREEPLDHVLLF 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTL+ ++A E+ VN R+ +GP I + GDLAA+L+ L+  DVLFIDEIHRLS +
Sbjct: 60  GPPGLGKTTLSNIIANEMNVNIRTVTGPAIERPGDLAAILSGLQPGDVLFIDEIHRLSSV 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDF LD+++G+G  ARS++I+L  FTL+ ATTR G LT PL+DRFG+ +RL
Sbjct: 120 VEEVLYPAMEDFYLDIVIGKGEEARSIRIDLPPFTLVGATTRAGSLTGPLRDRFGVHLRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y+  +LK I+ R A++    + +E+A E+A RSRGTPRIA RLL+RVRDF +V     
Sbjct: 180 EYYKESELKDIIIRTAEVLNTEIDEESAVELAKRSRGTPRIANRLLKRVRDFQQVNEDDM 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I  E    AL  L +D  G D +D + ++ I   + GGPVG++TI+  + E R  IED+ 
Sbjct: 240 IYIETTKRALQLLQVDDYGLDYIDHKMMSCIINQYNGGPVGLDTIAVSIGEERITIEDVY 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHL 327
           EP++IQ+GF++RTPRGR   P+A++H 
Sbjct: 300 EPFLIQKGFLERTPRGRKATPLAYEHF 326


>gi|297616929|ref|YP_003702088.1| Holliday junction DNA helicase RuvB [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297144766|gb|ADI01523.1| Holliday junction DNA helicase RuvB [Syntrophothermus lipocalidus
           DSM 12680]
          Length = 346

 Score =  349 bits (895), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 178/328 (54%), Positives = 237/328 (72%), Gaps = 4/328 (1%)

Query: 6   GLLSRNVSQEDADIS----LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
            L+S    +ED   +     LRP  L E+ GQ +A  N+ VFI++A  R E LDHVL  G
Sbjct: 3   RLVSPGRVEEDFIETNIEISLRPSRLAEYIGQEKAKENIAVFIDSALQRKEPLDHVLLSG 62

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA V+A E+G   R TSGP + + GDLAA+LTNLE  +VLFIDEIHRL+ +V
Sbjct: 63  PPGLGKTTLASVIANEMGKPIRKTSGPALERPGDLAAILTNLEPGEVLFIDEIHRLNRVV 122

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILYPAMEDF +D+++G+GPSAR+++++L  FTLI ATTR GLL++PL+DRFGI  RL+
Sbjct: 123 EEILYPAMEDFAIDIVIGKGPSARTLRLDLPPFTLIGATTRPGLLSSPLRDRFGILCRLD 182

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FYE ++L  I+ R A L G+++ +  A EIA R+RGTPRIA RLL+RVRDFA V    TI
Sbjct: 183 FYEEDELILIITRSAALLGISIDEGGAREIARRARGTPRIANRLLKRVRDFAVVQSGGTI 242

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
             EIA  AL +L ID+ G D++D   L +I   F GGPVG++T++A +SE  D + D+ E
Sbjct: 243 DAEIAAMALSKLEIDERGLDRIDRTILDIIISKFNGGPVGLDTLAAAVSEEPDTLLDVYE 302

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           PY+++ GFIQR+PRGR++ P  ++HLG 
Sbjct: 303 PYLLKIGFIQRSPRGRMVTPSGYRHLGY 330


>gi|85712319|ref|ZP_01043370.1| Holliday junction resolvasome, helicase subunit [Idiomarina baltica
           OS145]
 gi|85693946|gb|EAQ31893.1| Holliday junction resolvasome, helicase subunit [Idiomarina baltica
           OS145]
          Length = 322

 Score =  349 bits (895), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 179/322 (55%), Positives = 238/322 (73%), Gaps = 6/322 (1%)

Query: 1   MMDRE-----GLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEAL 54
           M++ +      ++  +V   ++A    +RP+ L ++TGQ      +++FIEAA+ R EAL
Sbjct: 1   MIEADHIPSHRIIEADVQGDDEAIDRAIRPKKLADYTGQKHVVEQMEIFIEAARKREEAL 60

Query: 55  DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEI 114
           DH+L  GPPGLGKTTLA +VA EL VN ++TSGPV+ KAGDLAALLTNL+  DVLFIDEI
Sbjct: 61  DHLLIFGPPGLGKTTLANIVANELDVNIKTTSGPVLEKAGDLAALLTNLDAHDVLFIDEI 120

Query: 115 HRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRF 174
           HRLS +VEEILYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G LT+PL+DRF
Sbjct: 121 HRLSPVVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGALTSPLRDRF 180

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
           GI  RL FY++E+L  I++R A    + +    A EIA RSRGTPRIA RLLRRVRD+AE
Sbjct: 181 GIVQRLEFYQVEELTEIIKRSAHYMNVNMDVGGAQEIARRSRGTPRIANRLLRRVRDYAE 240

Query: 235 VAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRD 294
           V     + +++A AAL  + +D+ GFD +D + L  I   F GGPVG++ ++A + E +D
Sbjct: 241 VKADGKVNQDVASAALTMVDVDQAGFDYMDRKLLLAIMEKFLGGPVGLDNLAAAIGEEKD 300

Query: 295 AIEDLIEPYMIQQGFIQRTPRG 316
            IED++EPY+IQQGF+QRTPRG
Sbjct: 301 TIEDVLEPYLIQQGFLQRTPRG 322


>gi|297571394|ref|YP_003697168.1| Holliday junction DNA helicase RuvB [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296931741|gb|ADH92549.1| Holliday junction DNA helicase RuvB [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 338

 Score =  349 bits (895), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 164/333 (49%), Positives = 222/333 (66%), Gaps = 1/333 (0%)

Query: 2   MDREGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M+   +     S  E A  + LRP+ LE+F GQ      L + ++AA AR +A DHVL  
Sbjct: 1   MEWNEITDTGASDTERAQEAALRPKRLEDFVGQQIVREQLSLVLDAAIARQKAPDHVLLS 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A E+G   R TSGP I   GDLAA+L++L++ DVLFIDEIHRL+  
Sbjct: 61  GPPGLGKTTLAMIIAAEVGGALRLTSGPAIQHPGDLAAVLSSLQEGDVLFIDEIHRLART 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            EE+LY AMEDF++D+MVG+GP A S+ + L  FT++ ATTR G+L  PL+DRFG    L
Sbjct: 121 AEEMLYLAMEDFRVDVMVGKGPGATSIPLALPPFTVVGATTRAGMLPAPLRDRFGFTAYL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           ++Y  E+L +IV+R A      ++ +AA EIA RSRGTPRIA RLLRRV+D+A+V     
Sbjct: 181 DYYTHEELASIVERNAIKLDAELSADAAVEIASRSRGTPRIANRLLRRVQDWAQVRGTGK 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +  E A +AL    +D  G D+LD   L  + R F GGPVG+ T++  + E  + IE + 
Sbjct: 241 LDVEAARSALNVFEVDLRGLDRLDRAVLEALCRRFNGGPVGLTTLAVSVGEEPETIETVA 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY+++QGFI +TPRGR+  P+AW+HLGI  P 
Sbjct: 301 EPYLMRQGFISKTPRGRIATPMAWEHLGIIPPE 333


>gi|320537238|ref|ZP_08037200.1| Holliday junction DNA helicase RuvB [Treponema phagedenis F0421]
 gi|320145913|gb|EFW37567.1| Holliday junction DNA helicase RuvB [Treponema phagedenis F0421]
          Length = 342

 Score =  349 bits (895), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 162/333 (48%), Positives = 223/333 (66%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M+  G +   +   D     LRPR L +F GQ +   NL VFI+AA+ R+E+LDH+  +G
Sbjct: 3   MEEFGTVHPELQSGDDKDPALRPRLLRDFQGQEKIKQNLHVFIQAARERSESLDHLFLIG 62

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLAQ+ A ELGV F+ T  P + K  DLA +LT L +R V FIDEIHRL   +
Sbjct: 63  PPGLGKTTLAQITANELGVEFKVTGAPALDKPKDLAGILTTLTERSVFFIDEIHRLKPAI 122

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMED++LD ++G+GP AR+V+I +  FTL+ ATTR G++++PL  RFGI  R  
Sbjct: 123 EEMLYIAMEDYELDWIIGQGPGARTVRIPIPPFTLVGATTRAGMVSSPLISRFGIVQRFE 182

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY  E+L +I++R AK+  + +   AA  +A   RGTPR+A RLLRR+RDFA+VA   ++
Sbjct: 183 FYTDEELASIIERSAKILQIRIEPSAALTLAKSCRGTPRVANRLLRRMRDFAQVAGKSSV 242

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T E+    L RL ID +G +  D + L  I  N+GGGPVG ET++  + E +D +ED  E
Sbjct: 243 TEEVIAVGLKRLNIDSLGLENHDRQILRSIIENYGGGPVGAETLAISIGESQDTLEDYYE 302

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           PY+IQ G IQRTPRGR++     +HLG+ +P +
Sbjct: 303 PYLIQSGLIQRTPRGRMITEKGCRHLGMSVPEQ 335


>gi|226226035|ref|YP_002760141.1| Holliday junction DNA helicase RuvB [Gemmatimonas aurantiaca T-27]
 gi|259495667|sp|C1A611|RUVB_GEMAT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|226089226|dbj|BAH37671.1| Holliday junction DNA helicase RuvB [Gemmatimonas aurantiaca T-27]
          Length = 342

 Score =  349 bits (895), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 173/332 (52%), Positives = 233/332 (70%), Gaps = 1/332 (0%)

Query: 2   MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M R  + +  V  ED  + L LRP+ L EF GQ     +L + ++AA+AR E +DH+LF 
Sbjct: 1   MSRAEITTPEVLTEDTAVELSLRPQRLAEFIGQSRVKESLTIALDAARARKEPVDHLLFF 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++ARELGVN   TSGP + K GDL A LT+L + DVLFIDEIHRL  +
Sbjct: 61  GPPGLGKTTLADLIARELGVNLTVTSGPALEKPGDLVAPLTSLREGDVLFIDEIHRLRPV 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EE LY AMED+++D+ + +GP+AR+V +N+ RFTL+ ATTR+G+LT PL+ RFGI  +L
Sbjct: 121 IEEFLYSAMEDYRIDIRLADGPNARTVPMNIERFTLVGATTRLGMLTAPLRARFGIVHQL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY +EDL+ IV+R  ++  + +  + A EIA RSRGTPR+A RLLRRVRD+AEV     
Sbjct: 181 GFYPVEDLEVIVRRTGEVLRVEMDADGAHEIARRSRGTPRVANRLLRRVRDYAEVRANGR 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           ITRE+A+AAL  L +D  G D +D R L  I   F GGPVG+ T++A + E    IE++ 
Sbjct: 241 ITREVAEAALALLDVDHFGLDDMDGRLLRAIIEKFEGGPVGLSTMAAAIGEDPGTIEEVY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EP+++Q GF+QRTPRGR+    A++HLG   P
Sbjct: 301 EPFLVQHGFLQRTPRGRVATARAYRHLGFVPP 332


>gi|330991873|ref|ZP_08315822.1| Holliday junction ATP-dependent DNA helicase ruvB
           [Gluconacetobacter sp. SXCC-1]
 gi|329760894|gb|EGG77389.1| Holliday junction ATP-dependent DNA helicase ruvB
           [Gluconacetobacter sp. SXCC-1]
          Length = 353

 Score =  349 bits (895), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 211/337 (62%), Positives = 255/337 (75%), Gaps = 3/337 (0%)

Query: 1   MMDR-EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M DR E  +     +ED     LRP+TL++FTGQ  +  NL +FI AA+ R +ALDHVL 
Sbjct: 1   MSDRPEREIDARRGEEDGGEGTLRPQTLDDFTGQKASRENLAIFIAAARQRGDALDHVLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLAQ+VARELGV FR+TSGPVI +AGDLAA+LTNL+ RDVLFIDEIHRL  
Sbjct: 61  HGPPGLGKTTLAQIVARELGVGFRATSGPVIQRAGDLAAILTNLQPRDVLFIDEIHRLHP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            +EE+LYPAMEDFQLDL++GEGP+ARSV+I+L+ FTL+AATTR GLL  PL+DRFGIP+R
Sbjct: 121 AIEEVLYPAMEDFQLDLIIGEGPAARSVRIDLAPFTLVAATTRAGLLATPLRDRFGIPLR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY  E+L  IV RGA+     +T E A EIA RSRGTPRIAGRLLRRVRDFA VA A 
Sbjct: 181 LVFYTPEELCQIVTRGARKLEFDLTPEGAEEIARRSRGTPRIAGRLLRRVRDFAAVARAG 240

Query: 240 T--ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
              + R +ADAAL RL +D MG D +D RYL  IA    GGPVG+ET++A L+E RD +E
Sbjct: 241 RGPVDRALADAALSRLEVDSMGLDGMDRRYLRRIAEYHHGGPVGVETLAAALAEARDTLE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           D+IEPY+IQ+G + RT RGR+L    W+HLG+  P R
Sbjct: 301 DVIEPYLIQEGLVLRTSRGRMLGERGWRHLGLQPPAR 337


>gi|24378590|ref|NP_720545.1| Holliday junction DNA helicase RuvB [Streptococcus mutans UA159]
 gi|44888489|sp|Q8DWI4|RUVB_STRMU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|24376443|gb|AAN57851.1|AE014858_3 Holliday junction DNA helicase RuvB [Streptococcus mutans UA159]
          Length = 344

 Score =  349 bits (895), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 167/318 (52%), Positives = 222/318 (69%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +  E+     LRP+ L+E+ GQ +    LK+FI+AAK R EALDHVL  GPPGLGKTT+A
Sbjct: 23  MGDEEFAERTLRPQYLQEYIGQDKVKDQLKIFIKAAKQRDEALDHVLLFGPPGLGKTTMA 82

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            V+A ELGVN + TSGP I KAGDL A+L +LE  DVLFIDEIHRL + VEE+LY AMED
Sbjct: 83  FVIANELGVNLKQTSGPAIEKAGDLVAVLNDLEPGDVLFIDEIHRLPMAVEEVLYSAMED 142

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F +D+M+G G ++RSV ++L  FTLI ATTR G+L+NPL+ RFGI   + +Y   DL  I
Sbjct: 143 FYIDIMIGAGETSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYTDIDLTEI 202

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           V+R A +  + +T +AA E+A RSRGTPRIA RLL+RVRD+A++     I  +I D AL 
Sbjct: 203 VERTADIFEMTITHQAALELARRSRGTPRIANRLLKRVRDYAQIMGDGLIDDKITDKALT 262

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L +D  G D +D + L  +   + GGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GFI 
Sbjct: 263 MLDVDHEGLDYVDQKILKTMIEMYHGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFII 322

Query: 312 RTPRGRLLMPIAWQHLGI 329
           RT  GR+    A++HLG 
Sbjct: 323 RTRSGRVATAKAYEHLGY 340


>gi|209543385|ref|YP_002275614.1| Holliday junction DNA helicase RuvB [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209531062|gb|ACI50999.1| Holliday junction DNA helicase RuvB [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 348

 Score =  349 bits (895), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 204/329 (62%), Positives = 253/329 (76%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
             +    + EDA  + LRP+TL++FTGQ  +  NL +FI AA+ R EA+DHVL  GPPGL
Sbjct: 7   REVDPARNAEDAAEAGLRPQTLDDFTGQKASRENLAIFIAAARQRGEAMDHVLLHGPPGL 66

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLAQ+VARELGV FR+TSGPVI +AGDLAA+LTNL+ RDVLFIDEIHRL   +EE+L
Sbjct: 67  GKTTLAQIVARELGVGFRATSGPVIQRAGDLAAILTNLQPRDVLFIDEIHRLQPAIEEVL 126

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           YPAMEDFQLDL++GEGP+ARSV+I+LS FTL+AATTR GLL  PL+DRFGIP+RL FY  
Sbjct: 127 YPAMEDFQLDLIIGEGPAARSVRIDLSPFTLVAATTRAGLLATPLRDRFGIPLRLVFYTP 186

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           ++L+ IV RGA+     +T E A EIA RSRGTPRIAGRLLRRVRDFA V     + R +
Sbjct: 187 DELRQIVSRGARKLEFDLTPEGAEEIARRSRGTPRIAGRLLRRVRDFASVTRGGPVDRAM 246

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           ADAAL RL +D +G D +D RYL  IA +  GGPVG+ET++A L+E RD +ED++EPY+I
Sbjct: 247 ADAALSRLEVDSLGLDGMDRRYLRRIAEHHHGGPVGVETLAAALAEARDTLEDVVEPYLI 306

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           Q+G + RT RGR+L    W+HLG+  P R
Sbjct: 307 QEGLVLRTSRGRMLGERGWRHLGLAPPPR 335


>gi|331267094|ref|YP_004326724.1| holliday junction DNA helicase RuvB [Streptococcus oralis Uo5]
 gi|326683766|emb|CBZ01384.1| holliday junction DNA helicase RuvB [Streptococcus oralis Uo5]
          Length = 332

 Score =  349 bits (895), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 171/323 (52%), Positives = 224/323 (69%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +  E+     LRP+ L E+ GQ +    L++FIEAAK R EALDHVL  GPPGLGKTT+A
Sbjct: 10  MGDEELVERTLRPKYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMA 69

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            V+A ELGVN + TSGPVI KAGDL A+L +LE  DVLFIDEIHRL + VEE+LY AMED
Sbjct: 70  FVIANELGVNLKQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMED 129

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F +D+M+G G  +RSV ++L  FTLI ATTR G+L+NPL+ RFGI   + +Y   DL  I
Sbjct: 130 FYIDIMIGAGEGSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYAHNDLTEI 189

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           V+R A +  + +T EAA E+A+RSRGTPRIA RLL+RVRDFA++     I   I D AL 
Sbjct: 190 VERTADIFEMEITHEAAAELALRSRGTPRIANRLLKRVRDFAQIMGNGVIDDVITDKALT 249

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L +D  G D +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GFI 
Sbjct: 250 MLDVDHEGLDYVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIM 309

Query: 312 RTPRGRLLMPIAWQHLGIDIPHR 334
           RT  GR+    A++HLG +   +
Sbjct: 310 RTRSGRVATAKAYEHLGYEYNEK 332


>gi|270292038|ref|ZP_06198253.1| holliday junction DNA helicase RuvB [Streptococcus sp. M143]
 gi|270279566|gb|EFA25408.1| holliday junction DNA helicase RuvB [Streptococcus sp. M143]
          Length = 332

 Score =  349 bits (895), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 171/323 (52%), Positives = 224/323 (69%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +  E+     LRP+ L E+ GQ +    L++FIEAAK R EALDHVL  GPPGLGKTT+A
Sbjct: 10  MGDEELVERTLRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMA 69

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            V+A ELGVN + TSGPVI KAGDL A+L +LE  DVLFIDEIHRL + VEE+LY AMED
Sbjct: 70  FVIANELGVNLKQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMED 129

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F +D+M+G G  +RSV ++L  FTLI ATTR G+L+NPL+ RFGI   + +Y   DL  I
Sbjct: 130 FYIDIMIGAGEGSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYAHADLTEI 189

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           V+R A +  + +T EAA E+A+RSRGTPRIA RLL+RVRDFA++     I   I D AL 
Sbjct: 190 VERTADIFEMEITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGNGVIDDVITDKALT 249

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L +D  G D +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GFI 
Sbjct: 250 MLDVDHEGLDYVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIM 309

Query: 312 RTPRGRLLMPIAWQHLGIDIPHR 334
           RT  GR+    A++HLG +   +
Sbjct: 310 RTRSGRVATAKAYEHLGYEYSEK 332


>gi|315498697|ref|YP_004087501.1| holliday junction DNA helicase ruvb [Asticcacaulis excentricus CB
           48]
 gi|315416709|gb|ADU13350.1| Holliday junction DNA helicase RuvB [Asticcacaulis excentricus CB
           48]
          Length = 347

 Score =  349 bits (895), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 194/331 (58%), Positives = 254/331 (76%), Gaps = 4/331 (1%)

Query: 6   GLLSRNVSQED----ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
            ++S   + +D    A    LRP++ ++F GQ    +NLK+F++AA AR EALDHVLF G
Sbjct: 3   RIISGEPTDDDVEAFASDRALRPQSFDDFVGQAPLKANLKIFVQAAAARKEALDHVLFYG 62

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLAQ+V++EL V FR+TSGP++AKAGDLAA+L+NLE  DVLFIDEIHRLS  V
Sbjct: 63  PPGLGKTTLAQIVSKELKVGFRATSGPMLAKAGDLAAILSNLEPNDVLFIDEIHRLSPQV 122

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILYPAMED+ LDL++G+GP+AR+V+I+L  FTL+ ATTR GLL+ PL+DRFGIP+RL 
Sbjct: 123 EEILYPAMEDYVLDLIIGDGPAARTVRIDLVPFTLVGATTRAGLLSQPLRDRFGIPLRLE 182

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY  E+L  +V    +  G  ++++ A E+A RSRGTPR+AGRLLRRVRDFA    A+ I
Sbjct: 183 FYTPEELVRVVMGTGRKMGAVLSEDGAFEVASRSRGTPRVAGRLLRRVRDFATAEGAEII 242

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
            +++A  AL RL +D  G DQLD RYL  +  N+ GGPVG+ETI+A ++E RDA+ED+IE
Sbjct: 243 DKKVASRALARLEVDPSGLDQLDRRYLAAMIENYNGGPVGLETIAAAIAEARDAVEDMIE 302

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           PY++QQGFIQRTPRGR+    A+ HLG++ P
Sbjct: 303 PYLMQQGFIQRTPRGRMACARAYTHLGLNPP 333


>gi|242373941|ref|ZP_04819515.1| Holliday junction DNA helicase B [Staphylococcus epidermidis
           M23864:W1]
 gi|242348295|gb|EES39897.1| Holliday junction DNA helicase B [Staphylococcus epidermidis
           M23864:W1]
          Length = 339

 Score =  349 bits (895), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 165/327 (50%), Positives = 228/327 (69%), Gaps = 2/327 (0%)

Query: 2   MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD+  ++ +    ED+   L LRP  L+++ GQ    SNL+VFI+AAK R E LDHVL  
Sbjct: 6   MDK-RMVDQEFHDEDSAFELSLRPTKLKQYIGQSSIKSNLEVFIKAAKLREEPLDHVLLF 64

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTL+ ++A E+ VN R+ SGP + + GDLAA+L+ L+  DVLFIDEIHRLS +
Sbjct: 65  GPPGLGKTTLSNIIANEMEVNIRTISGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSV 124

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDF LD+++G+G  ARS++I+L  FTL+ ATTR G LT PL+DRFG+ +RL
Sbjct: 125 VEEVLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATTRAGSLTGPLRDRFGVHLRL 184

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y   +LK I+ R A++    + +E+A E+A RSRGTPR+A RLL+RVRDF +V     
Sbjct: 185 EYYNENELKEIITRTAEVLDTGIDEESALELARRSRGTPRVANRLLKRVRDFQQVNEDDQ 244

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I  E    AL  L +D+ G D +D + +  I   + GGPVG++TI+  + E R  IED+ 
Sbjct: 245 IYIETTKRALQLLQVDQEGLDYIDHKMMNCIINQYNGGPVGLDTIAVSIGEERITIEDVY 304

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHL 327
           EP++IQ+GF++RTPRGR     A++H 
Sbjct: 305 EPFLIQKGFLERTPRGRKATAFAYEHF 331


>gi|221231160|ref|YP_002510312.1| Holliday junction DNA helicase, subunit B [Streptococcus pneumoniae
           ATCC 700669]
 gi|220673620|emb|CAR68107.1| Holliday junction DNA helicase, subunit B [Streptococcus pneumoniae
           ATCC 700669]
          Length = 323

 Score =  349 bits (895), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 169/323 (52%), Positives = 220/323 (68%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +  E+     LRP+ L E+ GQ +    L++FIEAAK R EALDHVL  GPPGLGKTT+A
Sbjct: 1   MGDEELVERTLRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMA 60

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            V+A ELGVN + TSGPVI KAGDL A+L  LE  DVLFIDEIHRL + VEE+LY AMED
Sbjct: 61  FVIANELGVNLKQTSGPVIEKAGDLVAILNELEPGDVLFIDEIHRLPMSVEEVLYSAMED 120

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F +D+M+G G  +RSV + L  FTLI ATTR G+L+NPL+ RFGI   + +Y    L  I
Sbjct: 121 FYIDIMIGAGEGSRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYAHAGLTEI 180

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           V+R A +  + +T EAA E+A+RSRGTPRIA RLL+RVRDFA++     I   I D AL 
Sbjct: 181 VERTADIFEMEITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGNGVIDDIITDKALT 240

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L +D  G D +D + L  +   + GGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GFI 
Sbjct: 241 MLDVDHEGLDYVDQKILRTMIEMYSGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIM 300

Query: 312 RTPRGRLLMPIAWQHLGIDIPHR 334
           RT  GR+    A++HLG +   +
Sbjct: 301 RTRSGRVATAKAYEHLGYEYSEK 323


>gi|328947935|ref|YP_004365272.1| Holliday junction ATP-dependent DNA helicase ruvB [Treponema
           succinifaciens DSM 2489]
 gi|328448259|gb|AEB13975.1| Holliday junction ATP-dependent DNA helicase ruvB [Treponema
           succinifaciens DSM 2489]
          Length = 380

 Score =  348 bits (894), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 158/319 (49%), Positives = 216/319 (67%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
            S +D   + LRP  L EF GQ     NL VFI+AA+ R EALDH+  +GPPGLGKTTLA
Sbjct: 49  ASSDDVQENSLRPALLGEFLGQQTVKENLSVFIDAARKRHEALDHLFLIGPPGLGKTTLA 108

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
           Q+ A ELG +F+ TS P + K  DLA +L+ +  R V FIDEIHRL   +EE+LY AMED
Sbjct: 109 QITANELGADFKVTSAPALEKPKDLAGILSTISPRTVFFIDEIHRLKPAIEEMLYIAMED 168

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           ++LD ++G+G +AR+V+I + +FTL+ ATT+ G++++PL  RFGI  R +FY  E+L +I
Sbjct: 169 YELDWVIGQGAAARTVRIPIPKFTLVGATTKAGMVSSPLISRFGIIQRFSFYTKEELASI 228

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           ++R AK+  + V D+AA  +A  SRGTPR+  R+LRR+RDFA+V  +  IT+ I    L 
Sbjct: 229 IRRSAKILNVQVEDDAALLMAGCSRGTPRVTNRILRRMRDFAQVEGSGVITKSIVKKGLE 288

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
           RL +D +G +  D   L  I + FGGGPVG ET++  + E  D +ED  EPY+IQ G +Q
Sbjct: 289 RLGVDSLGLENYDREILLAIIKKFGGGPVGAETLAISIGESMDTLEDYYEPYLIQCGLLQ 348

Query: 312 RTPRGRLLMPIAWQHLGID 330
           RTPRGR+    A+ HLGI 
Sbjct: 349 RTPRGRVATEKAYNHLGIS 367


>gi|119486176|ref|ZP_01620236.1| Holliday junction DNA helicase [Lyngbya sp. PCC 8106]
 gi|119456667|gb|EAW37796.1| Holliday junction DNA helicase [Lyngbya sp. PCC 8106]
          Length = 374

 Score =  348 bits (894), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 163/333 (48%), Positives = 221/333 (66%), Gaps = 4/333 (1%)

Query: 5   EGLLSRNVSQEDA----DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           + LL    + ++         +RP+ + ++ GQ +    L++ I AAK+R E LDH+L  
Sbjct: 35  DHLLEPQETTDEQVNPKQDESIRPQRICDYIGQKDLKEVLEIAIAAAKSRNETLDHLLLY 94

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTT+A ++A E+GV  + T+ P I K  D+A LL NL+  ++LFIDEIHRLS +
Sbjct: 95  GPPGLGKTTMALILASEMGVTCKITTAPAIEKPRDIAGLLVNLKPGEILFIDEIHRLSKM 154

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            EEILYPAMED +LD+ +G+G SA++  I L+ FT++ ATTR+G LT+PL+DRFG+  RL
Sbjct: 155 AEEILYPAMEDCRLDITIGQGRSAKTRSIPLTPFTIVGATTRIGALTSPLRDRFGLIQRL 214

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FYE+++L  IV+R AKL    +  + A EIA RSRGTPRIA RLL+RVRD+ EV  +  
Sbjct: 215 RFYEVDELSLIVERTAKLLNTPINPDGAEEIARRSRGTPRIANRLLKRVRDYVEVKASGP 274

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           IT EIA  AL    +D MG D  D   L  +  NF GGPVG+ET++A   E    IE++ 
Sbjct: 275 ITGEIAATALQLFNVDPMGLDWTDRHLLQKMIENFNGGPVGLETMAATTGEDAQTIEEVY 334

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY++Q GF+QRT RGRL    AW+HLG   P 
Sbjct: 335 EPYLMQIGFLQRTHRGRLATASAWKHLGYSPPE 367


>gi|322375001|ref|ZP_08049515.1| holliday junction DNA helicase RuvB [Streptococcus sp. C300]
 gi|321280501|gb|EFX57540.1| holliday junction DNA helicase RuvB [Streptococcus sp. C300]
          Length = 332

 Score =  348 bits (894), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 170/323 (52%), Positives = 224/323 (69%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +  E+     LRP+ L E+ GQ +    L++FIEAAK R EALDHVL  GPPGLGKTT+A
Sbjct: 10  MGDEELVERTLRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMA 69

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            V+A ELGVN + TSGPVI KAGDL A+L +LE  DVLFIDEIHRL + VEE+LY AMED
Sbjct: 70  FVIANELGVNLKQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMED 129

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F +D+M+G G  +RSV ++L  FTLI ATTR G+L+NPL+ RFGI   + +Y   DL  I
Sbjct: 130 FYIDIMIGAGEGSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYAHADLTEI 189

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           V+R A +  + +T EAA E+A+RSRGTPRIA RLL+RVRDFA++     I   I + AL 
Sbjct: 190 VERTADIFEMEITHEAATELALRSRGTPRIANRLLKRVRDFAQIMGNGVIDDVITNKALT 249

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L +D  G D +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GFI 
Sbjct: 250 MLDVDHEGLDYVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIM 309

Query: 312 RTPRGRLLMPIAWQHLGIDIPHR 334
           RT  GR+    A++HLG +   +
Sbjct: 310 RTRSGRVATAKAYEHLGYEYSEK 332


>gi|262197091|ref|YP_003268300.1| Holliday junction DNA helicase RuvB [Haliangium ochraceum DSM
           14365]
 gi|262080438|gb|ACY16407.1| Holliday junction DNA helicase RuvB [Haliangium ochraceum DSM
           14365]
          Length = 376

 Score =  348 bits (894), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 172/314 (54%), Positives = 226/314 (71%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            LRP+  +++ GQ +  +NL+V + AAK    ALDH LF GPPGLGKTTLA V+A ELGV
Sbjct: 53  ALRPQRFDDYVGQPDIIANLRVSVSAAKQNGWALDHFLFAGPPGLGKTTLAHVIANELGV 112

Query: 81  NFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
               TSGP I   G LA+LLT L + DVLFIDEIHRL+ +VEE LYPAMEDF+ DL +G+
Sbjct: 113 GVHVTSGPAIDHKGMLASLLTALGEGDVLFIDEIHRLNPVVEENLYPAMEDFKFDLFIGD 172

Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
           GP A++V +NL RFTL+ ATTR+GLL++PL DRFG   +L +Y++ ++  IV R A++ G
Sbjct: 173 GPHAKAVTMNLPRFTLLGATTRMGLLSSPLLDRFGFHWQLGYYDLSEMAAIVARSAQVLG 232

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGF 260
           + + D  A EIA RSRGTPRIA RLLRRVRDFA V  +  I  ++A AAL RL++D  G 
Sbjct: 233 VGMEDGGALEIARRSRGTPRIANRLLRRVRDFATVESSGVIGGKLAAAALDRLSVDHAGL 292

Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320
           D LD  YLT++   F GGPVG++ I+A +SE R  +ED++EP+++Q GFI RTPRGR+  
Sbjct: 293 DALDRAYLTVVVERFDGGPVGVDAIAASMSEERGTLEDVVEPFLLQAGFITRTPRGRMAT 352

Query: 321 PIAWQHLGIDIPHR 334
             A++HLG+  P R
Sbjct: 353 AAAFRHLGVRAPGR 366


>gi|159029417|emb|CAO90793.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 362

 Score =  348 bits (894), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 159/328 (48%), Positives = 228/328 (69%), Gaps = 2/328 (0%)

Query: 4   REGLLSRNVSQEDAD--ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
            E LL+ N + E+ +   + +RP++LE++ GQ +  +NLKV I AAKAR EA+DH+LF G
Sbjct: 18  EENLLTPNPTIEETEKAEAQIRPQSLEDYIGQQDLKANLKVTIAAAKARQEAIDHLLFYG 77

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTT+A ++A ++GVN R T+ P + +  D+  +L NL+ RD+LFIDEIHRL+ + 
Sbjct: 78  PPGLGKTTMALILAAQMGVNCRITAAPALERPRDITGILINLQPRDILFIDEIHRLNRVT 137

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMED++LD+ +G+G +A+   I+L  FTLI ATT+VG LT PL+DRFG+  RL 
Sbjct: 138 EELLYPAMEDYRLDVTIGKGQAAKIRSISLPPFTLIGATTKVGSLTAPLRDRFGMIQRLR 197

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY +E+L  I+ R A +  + +T+  A EIA RSRGTPRIA RLL+RVRD+ +V     I
Sbjct: 198 FYTVEELTAIMLRSATIFNIPITEAGAIEIARRSRGTPRIANRLLKRVRDYVQVKGETII 257

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T ++A   L +L +D MG D  D   L  +   F G PVG+E ++A   E    IE++ E
Sbjct: 258 TPQLAAEGLNQLNVDSMGLDWTDRLVLKTMIEQFQGKPVGLEAVAAATGEDAKTIEEVYE 317

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           PY++Q G++ RTPRGR++   A++HLG+
Sbjct: 318 PYLLQIGYLHRTPRGRVVTAAAYEHLGL 345


>gi|237737738|ref|ZP_04568219.1| holliday junction DNA helicase ruvB [Fusobacterium mortiferum ATCC
           9817]
 gi|229419618|gb|EEO34665.1| holliday junction DNA helicase ruvB [Fusobacterium mortiferum ATCC
           9817]
          Length = 333

 Score =  348 bits (894), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 168/324 (51%), Positives = 233/324 (71%), Gaps = 1/324 (0%)

Query: 5   EGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E +++    + + ++   LRP++  E+ GQ      + ++IEAAK R  ++DH+L  GPP
Sbjct: 2   ERVVANEEFENEIEVQKSLRPKSFREYIGQESLKDKMSIYIEAAKRRGSSVDHILLYGPP 61

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA VVA E+G N + TSGPV+ +AGDLAA+LT+LE+ D+LFIDEIHRL+  VEE
Sbjct: 62  GLGKTTLAGVVANEMGANLKITSGPVLERAGDLAAILTSLEENDILFIDEIHRLNNTVEE 121

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILYPAMED +LD+++G+GPSARS++I L  FTLI ATTR GLL++PL+DRFG+  R+ +Y
Sbjct: 122 ILYPAMEDGELDIIIGKGPSARSIRIELPNFTLIGATTRAGLLSSPLRDRFGVTHRMEYY 181

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
             E+L  I+ RG K+ G+ V  E A E+A RSRGTPRIA RLL+RVRD+ E+     IT+
Sbjct: 182 TEEELAQIILRGGKILGVKVEREGALELASRSRGTPRIANRLLKRVRDYCEIRGNGVITK 241

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           EI+  AL  L +D +G D LD   +  I  N+GGGPVGIET+S  L E R  +E++ EPY
Sbjct: 242 EISMKALDILGVDSVGLDDLDRDIINAIIDNYGGGPVGIETLSLLLGEDRRTLEEVYEPY 301

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHL 327
           +++ G+I+RT RGR++   A++H 
Sbjct: 302 LVKIGYIKRTNRGRVVTEKAYEHF 325


>gi|29833377|ref|NP_828011.1| Holliday junction DNA helicase RuvB [Streptomyces avermitilis
           MA-4680]
 gi|44888445|sp|Q820F3|RUVB_STRAW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|29610500|dbj|BAC74546.1| putative Holliday junction DNA helicase subunit A [Streptomyces
           avermitilis MA-4680]
          Length = 356

 Score =  348 bits (894), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 162/331 (48%), Positives = 224/331 (67%), Gaps = 1/331 (0%)

Query: 5   EGLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E L+  +  +ED A  + LRP+ L+EF GQ +    L + + AA+AR    DHVL  G P
Sbjct: 13  ERLVGASADREDQAVEAALRPKDLDEFIGQEKVREQLDLVLRAARARGATSDHVLLSGAP 72

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTL+ ++A E+G   R TSGP I  AGDLAA+L++L++ +VLF+DEIHR+S   EE
Sbjct: 73  GLGKTTLSMIIAAEMGAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEE 132

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LY AMEDF++D++VG+GP A ++ + L  FTL+ ATTR GLL  PL+DRFG    + FY
Sbjct: 133 MLYMAMEDFRVDVIVGKGPGATAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTAHMEFY 192

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           E  +L+ ++ R A L  + +    A EIA RSRGTPRIA RLLRRVRD+A+V     ITR
Sbjct: 193 EPHELERVIHRSAGLLDVEIDSRGAAEIAGRSRGTPRIANRLLRRVRDYAQVKADGVITR 252

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           EIA AAL    +D  G D+LD   L  + + FGGGPVG+ T++  + E R+ +E++ EP+
Sbjct: 253 EIAAAALKVYEVDARGLDRLDRGVLEALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPF 312

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           ++++G + RTPRGR+  P AW HLG+  P R
Sbjct: 313 LVREGLLARTPRGRVATPAAWAHLGLTPPPR 343


>gi|327463406|gb|EGF09725.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           sanguinis SK1057]
          Length = 332

 Score =  348 bits (894), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 168/320 (52%), Positives = 228/320 (71%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +  E+     LRP+ L+E+ GQ +    LK+FIEAAK R EALDH L  GPPGLGKTT+A
Sbjct: 10  MGDEELVERTLRPQYLQEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMA 69

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            V+A ELGVN + TSGPVI K+GDL A+L +LE  DVLFIDEIHRL + VEE+LY AMED
Sbjct: 70  FVIANELGVNLKQTSGPVIEKSGDLVAILNDLEPGDVLFIDEIHRLPMAVEEVLYSAMED 129

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F +D+M+G G ++RSV ++L  FTLI ATTR G+L+NPL+ RFGI   + +YE  DL  I
Sbjct: 130 FYIDIMIGSGETSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYEAGDLTEI 189

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           V+R A++  + +T +AA E+A+RSRGTPRIA RLL+RVRD+A++     I  +I D AL 
Sbjct: 190 VERTAEIFEMDITHKAAKELALRSRGTPRIANRLLKRVRDYAQIMGNGLIDDKITDQALS 249

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L +D+ G D +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GF+ 
Sbjct: 250 MLDVDQEGLDYVDQKILKTMIEVYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFVM 309

Query: 312 RTPRGRLLMPIAWQHLGIDI 331
           RT  GR+    A++HLG + 
Sbjct: 310 RTRTGRVATRKAYEHLGYEY 329


>gi|322388648|ref|ZP_08062248.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           infantis ATCC 700779]
 gi|321140568|gb|EFX36073.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           infantis ATCC 700779]
          Length = 332

 Score =  348 bits (894), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 171/323 (52%), Positives = 225/323 (69%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +  E+     LRP+ L E+ GQ +    L++FIEAAK R EALDHVL  GPPGLGKTT+A
Sbjct: 10  MGDEELVERTLRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMA 69

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            V+A ELGVN + TSGPVI KAGDL A+L +LE  DVLFIDEIHRL + VEE+LY AMED
Sbjct: 70  FVIANELGVNLKQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMED 129

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F +D+M+G G ++RSV ++L  FTLI ATTR G+L+NPL+ RFGI   + +Y   DL  I
Sbjct: 130 FYIDIMIGAGEASRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYTHADLTEI 189

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           V+R A +  + +T EAA E+A+RSRGTPRIA RLL+RVRDFA++     I   I D AL 
Sbjct: 190 VERTADIFEMEITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGDGLIDDVITDKALT 249

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L +D  G D +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GFI 
Sbjct: 250 MLDVDHEGLDYVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIM 309

Query: 312 RTPRGRLLMPIAWQHLGIDIPHR 334
           RT  GR+    A++HLG +   +
Sbjct: 310 RTRSGRVATAKAYEHLGYEYSEK 332


>gi|237740314|ref|ZP_04570795.1| holliday junction DNA helicase ruvB [Fusobacterium sp. 2_1_31]
 gi|229422331|gb|EEO37378.1| holliday junction DNA helicase ruvB [Fusobacterium sp. 2_1_31]
          Length = 338

 Score =  348 bits (894), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 163/324 (50%), Positives = 230/324 (70%), Gaps = 1/324 (0%)

Query: 5   EGLLSR-NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           + ++S   +  E      LRP++ +E+ GQ      + + I+AA+ R   +DH+L  GPP
Sbjct: 2   DRIISELEMPNEIEIQKSLRPKSFDEYIGQENLKEKMSISIKAAQKRNMTVDHILLYGPP 61

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA V+A E+  N + TSGP++ KAGDLAA+LT+LE+ D+LFIDEIHRL+  VEE
Sbjct: 62  GLGKTTLAGVIANEMQANLKITSGPILEKAGDLAAILTSLEENDILFIDEIHRLNNTVEE 121

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILYPAMED +LD+++G+GPSA+S++I L  FTLI ATTR GLL+ PL+DRFG+  ++ +Y
Sbjct: 122 ILYPAMEDGELDIIIGKGPSAKSIRIELPPFTLIGATTRAGLLSAPLRDRFGVSHKMEYY 181

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            I+++K I+ RGAK+ G+ +++E A EI+ RSRGTPRIA RLL+RVRD+ E+    TI  
Sbjct: 182 NIDEIKAIIIRGAKILGVKISEEGAIEISKRSRGTPRIANRLLKRVRDYCEIKGNGTIDV 241

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
             A  AL  L +D  G D+LD   +  I  N+ GGPVGIET+S  L E R  +E++ EPY
Sbjct: 242 LSAKNALDMLGVDSSGLDELDRNIINSIIENYDGGPVGIETLSLLLGEDRRTLEEVYEPY 301

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHL 327
           +++ GF++RT RGR++ P A+QH 
Sbjct: 302 LVKIGFLKRTNRGRVVTPKAYQHF 325


>gi|313124266|ref|YP_004034525.1| holliday junction ATP-dependent DNA helicase ruvb [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
 gi|312280829|gb|ADQ61548.1| Holliday junction ATP-dependent DNA helicase ruvB [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
          Length = 336

 Score =  348 bits (894), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 171/332 (51%), Positives = 233/332 (70%), Gaps = 1/332 (0%)

Query: 2   MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M  E L S+  ++ +  + L LRP+ L ++ GQ     +++V+I+AA+ R EALDHVL  
Sbjct: 1   MTEEHLTSQEAAEGEEAVELSLRPQLLSQYIGQGHVKKDMEVYIQAARQRDEALDHVLLY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA V+A ELGVN +STSGP I +AGDL ALLT+LE  DVLFIDEIHRL+  
Sbjct: 61  GPPGLGKTTLAFVIANELGVNLKSTSGPAIERAGDLVALLTDLEPGDVLFIDEIHRLAKP 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LY AMEDF +D+MVGEG +  ++ + L  FTLI ATT  G L+ PL+DRFGI   +
Sbjct: 121 VEEVLYSAMEDFYIDIMVGEGQTTHAIHLPLPPFTLIGATTLAGQLSAPLRDRFGIVEHM 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y++EDL+ I+ R +++    ++ +AA E+A RSRGTPR+A RLL+RVRDFAEV   K 
Sbjct: 181 QYYQVEDLEKIILRSSEVFHTKISTQAAHELARRSRGTPRVANRLLKRVRDFAEVKGEKE 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I+ E    AL +L +D  G DQ D + L  +  ++GGGPVGI T+++ + E R+ IE L 
Sbjct: 241 ISLETTAMALKQLQVDSAGLDQTDRKLLRTMILSYGGGPVGIRTLASNIGEDRETIESLY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EPY++Q GFI  TPRGR++   A+Q L + +P
Sbjct: 301 EPYLLQNGFIVMTPRGRVVTQKAYQQLNLPLP 332


>gi|82751239|ref|YP_416980.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus RF122]
 gi|97190337|sp|Q2YT89|RUVB_STAAB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|82656770|emb|CAI81199.1| Holliday junction DNA helicase [Staphylococcus aureus RF122]
          Length = 334

 Score =  348 bits (894), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 168/324 (51%), Positives = 231/324 (71%), Gaps = 1/324 (0%)

Query: 5   EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E ++ +++  E+ D  L LRP  L ++ GQ    SNL+VFI+AAK R E LDHVL  GPP
Sbjct: 3   ERMVDQSMHSEETDFELSLRPTRLRQYIGQNSIKSNLEVFIKAAKLRHEPLDHVLLFGPP 62

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTL+ ++A E+ VN R+ SGP + + GDLAA+L+ L+  DVLFIDEIHRLS +VEE
Sbjct: 63  GLGKTTLSNIIANEMEVNIRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSVVEE 122

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LYPAMEDF LD+++G+G  ARS++I+L  FTL+ ATTR G LT PL+DRFG+ +RL +Y
Sbjct: 123 VLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATTRAGSLTGPLRDRFGVHLRLEYY 182

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
              DLK I+ R A++ G  + DE+A E+A RSRGTPR+A RLL+RVRDF +V   + I  
Sbjct: 183 NESDLKEIIIRTAEVLGTGIDDESAIELAKRSRGTPRVANRLLKRVRDFQQVNEDEQIYI 242

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           E    AL  L +D+ G D +D + +  I + + GGPVG++TI+  + E R  IED+ EP+
Sbjct: 243 ETTKHALGLLQVDQHGLDYIDHKMMNCIIKQYNGGPVGLDTIAVTIGEERITIEDVYEPF 302

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHL 327
           +IQ+GF++RTPRGR   P+A+ H 
Sbjct: 303 LIQKGFLERTPRGRKATPLAYGHF 326


>gi|259507384|ref|ZP_05750284.1| Holliday junction DNA helicase RuvB [Corynebacterium efficiens
           YS-314]
 gi|259165009|gb|EEW49563.1| Holliday junction DNA helicase RuvB [Corynebacterium efficiens
           YS-314]
          Length = 363

 Score =  348 bits (894), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 161/332 (48%), Positives = 228/332 (68%), Gaps = 1/332 (0%)

Query: 3   DREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           D +  +  N+  +D +  + LRPR+L+EF GQ +    L + +  AK R    DHVL  G
Sbjct: 26  DPDTSVDANIQPDDVEAEVTLRPRSLDEFIGQPKVRDQLSLVLTGAKKRGVVPDHVLLSG 85

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTT+A ++A+ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++   
Sbjct: 86  PPGLGKTTMAMIIAQELGTSLRMTSGPALERAGDLAAMLSNLMEGDVLFIDEIHRIARPA 145

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMEDF++D++VG+GP A S+ + +  FTL+ ATTR G+LT PL+DRFG   ++ 
Sbjct: 146 EEMLYMAMEDFRIDVIVGKGPGATSIPLEIPPFTLVGATTRSGMLTGPLRDRFGFTAQME 205

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY++ DL  +V+R A++  + +  +AA EIA RSRGTPRIA RLLRRVRDFAEV     I
Sbjct: 206 FYDVADLTRVVKRTARILEVGIDADAAVEIASRSRGTPRIANRLLRRVRDFAEVHADGHI 265

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T   A+AAL+   +D++G D+LD   L  + R  GGGPVG+ T++  + E    +E++ E
Sbjct: 266 TLGAANAALIVFDVDELGLDRLDRAVLDALVRGHGGGPVGVNTLAVAVGEEPATVEEVCE 325

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           PY+++ G I RT RGR+    AW+HLG++ P 
Sbjct: 326 PYLVRAGMIARTGRGRVATAAAWRHLGLEPPE 357


>gi|332204266|gb|EGJ18331.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           GA47901]
          Length = 323

 Score =  348 bits (894), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 171/323 (52%), Positives = 222/323 (68%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +  E+     LRP+ L E+ GQ +    L++FIEAAK R EALDHVL  GPPGLGKTT+A
Sbjct: 1   MGDEELVERTLRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMA 60

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            V+A ELGVN + TSGPVI KAGDL A+L  LE  DVLFIDEIHRL + VEE+LY AMED
Sbjct: 61  FVIANELGVNLKQTSGPVIEKAGDLVAILNELEPGDVLFIDEIHRLPMSVEEVLYSAMED 120

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F +D+M+G G  +RSV + L  FTLI ATTR G+L+NPL+ RFGI   + +Y   DL  I
Sbjct: 121 FYIDIMIGAGEGSRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYAHADLTEI 180

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           V+R A +  + +T EAA E+A+RSRGTPRIA RLL+RVRDFA++     I   I D AL 
Sbjct: 181 VERTADIFEMEITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGNGVIDDVITDKALT 240

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L +D  G D +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GFI 
Sbjct: 241 MLDVDHEGLDYVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIM 300

Query: 312 RTPRGRLLMPIAWQHLGIDIPHR 334
           RT  GR+    A++HLG +   +
Sbjct: 301 RTRSGRMATAKAYEHLGYEYNEK 323


>gi|319940375|ref|ZP_08014725.1| Holliday junction ATP-dependent DNA helicase ruvB [Streptococcus
           anginosus 1_2_62CV]
 gi|319810431|gb|EFW06773.1| Holliday junction ATP-dependent DNA helicase ruvB [Streptococcus
           anginosus 1_2_62CV]
          Length = 332

 Score =  348 bits (894), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 170/323 (52%), Positives = 228/323 (70%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +  E+     LRP+ L+E+ GQ +  + LK+FIEAAK R EALDH L  GPPGLGKTT+A
Sbjct: 10  MGDEELVERTLRPQYLQEYIGQDKVKNQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMA 69

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            V+A ELGVN + TSGPVI KAGDL A+L +LE  DVLFIDEIHRL + VEE+LY AMED
Sbjct: 70  FVIANELGVNLKQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMED 129

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F +D+M+G G ++RSV + L  FTLI ATTR G+L+NPL+ RFGI   + +Y   DL  I
Sbjct: 130 FYIDIMIGSGETSRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYAEADLTEI 189

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           V+R A++  + +T EAA E+A+RSRGTPRIA RLL+RVRDFA++     I   I D AL 
Sbjct: 190 VERTAEIFEMDITHEAAEELALRSRGTPRIANRLLKRVRDFAQIMGDGLIDAHITDQALS 249

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L +D+ G D +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GF+ 
Sbjct: 250 MLDVDQEGLDYVDQKILKTMIEVYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFVM 309

Query: 312 RTPRGRLLMPIAWQHLGIDIPHR 334
           RT  GR++   A++HLG +   +
Sbjct: 310 RTRTGRVVTRKAYEHLGYEYFEK 332


>gi|224541318|ref|ZP_03681857.1| hypothetical protein CATMIT_00478 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525755|gb|EEF94860.1| hypothetical protein CATMIT_00478 [Catenibacterium mitsuokai DSM
           15897]
          Length = 330

 Score =  348 bits (894), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 167/329 (50%), Positives = 235/329 (71%), Gaps = 2/329 (0%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MDR+ L +    +++   S LRP + +E+ GQ +   NL+VF+ AAK R E LDHVLF G
Sbjct: 1   MDRDVLDTNEHIEDE--ESSLRPASFDEYVGQHDLKENLRVFVGAAKMRDETLDHVLFYG 58

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTT++ ++A E+G + + T+GP I K GDL ALLT+LE  DVLFIDEIHRL+ +V
Sbjct: 59  PPGLGKTTMSMIIANEMGTHIKITTGPSIEKTGDLVALLTSLEPGDVLFIDEIHRLNKVV 118

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILYPAMEDF +D+M+G+  + RSV+I+L  FTL+ ATTR G ++ PL+DRFGI  +L+
Sbjct: 119 EEILYPAMEDFCVDVMIGKDATTRSVRIDLPPFTLVGATTRAGDISAPLRDRFGIVAKLD 178

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y+ E+L+ I+ R +K+ G+ + +EA  E+A RSRGTPRIA RL RRVRDFA+    + I
Sbjct: 179 YYKDEELRDIISRTSKVYGMTMEEEAKMELARRSRGTPRIANRLFRRVRDFAQFYGDEII 238

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T++    AL RL +D +G D +D +YL  I   F GGPVG+E ++A + E R  +ED+ E
Sbjct: 239 TKDRTMQALDRLKVDNLGLDDVDHKYLLGIINRFQGGPVGLEALAASIGEERMTLEDVYE 298

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           PY++Q+G I+RT RGR+   +A++H  I 
Sbjct: 299 PYLLQKGLIKRTSRGRIATNLAYRHFHIT 327


>gi|332077561|gb|EGI88022.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           GA41301]
          Length = 332

 Score =  348 bits (894), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 171/323 (52%), Positives = 222/323 (68%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +  E+     LRP+ L E+ GQ +    L++FIEAAK R EALDHVL  GPPGLGKTT+A
Sbjct: 10  MGDEELVERTLRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMA 69

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            V+A ELGVN + TSGPVI KAGDL A+L  LE  DVLFIDEIHRL + VEE+LY AMED
Sbjct: 70  FVIANELGVNLKQTSGPVIEKAGDLVAILNELEPGDVLFIDEIHRLPMSVEEVLYSAMED 129

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F +D+M+G G  +RSV + L  FTLI ATTR G+L+NPL+ RFGI   + +Y   DL  I
Sbjct: 130 FYIDIMIGAGEGSRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYAHADLTEI 189

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           V+R A +  + +T EAA E+A+RSRGTPRIA RLL+RVRDFA++     I   I D AL 
Sbjct: 190 VERTADIFEMEITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGNGVIDDVITDKALT 249

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L +D  G D +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GFI 
Sbjct: 250 MLDVDHEGLDYVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIM 309

Query: 312 RTPRGRLLMPIAWQHLGIDIPHR 334
           RT  GR+    A++HLG +   +
Sbjct: 310 RTRSGRVATAKAYEHLGYEYSEK 332


>gi|294782592|ref|ZP_06747918.1| holliday junction DNA helicase RuvB [Fusobacterium sp. 1_1_41FAA]
 gi|294481233|gb|EFG29008.1| holliday junction DNA helicase RuvB [Fusobacterium sp. 1_1_41FAA]
          Length = 338

 Score =  348 bits (893), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 162/324 (50%), Positives = 230/324 (70%), Gaps = 1/324 (0%)

Query: 5   EGLLSR-NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           + ++S   +  E      LRP++ +E+ GQ      + + I+AA+ R   +DH+L  GPP
Sbjct: 2   DRIISELEMPNEIEIQKSLRPKSFDEYIGQENLKEKMNISIKAAQKRNMTVDHILLYGPP 61

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA V+A E+  N + TSGP++ KAGDLAA+LT+LE+ D+LFIDEIHRL+  VEE
Sbjct: 62  GLGKTTLAGVIANEMQANLKITSGPILEKAGDLAAILTSLEENDILFIDEIHRLNNTVEE 121

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILYPAMED +LD+++G+GPSA+S++I L  FTLI ATTR GLL+ PL+DRFG+  ++ +Y
Sbjct: 122 ILYPAMEDGELDIIIGKGPSAKSIRIELPPFTLIGATTRAGLLSAPLRDRFGVSHKMEYY 181

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            I++++ I+ RGAK+ G+ +++E A EI+ RSRGTPRIA RLL+RVRD+ E+    TI  
Sbjct: 182 NIDEIRAIIIRGAKILGVKISEEGAIEISKRSRGTPRIANRLLKRVRDYCEIKGNGTIDV 241

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
             A  AL  L +D  G D+LD   +  I  N+ GGPVGIET+S  L E R  +E++ EPY
Sbjct: 242 VSAKNALDMLGVDSSGLDELDRNIINSIIENYDGGPVGIETLSLLLGEDRRTLEEVYEPY 301

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHL 327
           +++ GF++RT RGR++ P A+QH 
Sbjct: 302 LVKIGFLKRTNRGRVVTPKAYQHF 325


>gi|325697228|gb|EGD39114.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           sanguinis SK160]
 gi|328944788|gb|EGG38949.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           sanguinis SK1087]
          Length = 332

 Score =  348 bits (893), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 170/320 (53%), Positives = 229/320 (71%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +  E+     LRPR L+E+ GQ +  + LK+FIEAAK R EALDH L  GPPGLGKTT+A
Sbjct: 10  MGDEELVERTLRPRYLQEYIGQDKVKNQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMA 69

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            V+A ELGVN + TSGPVI K+GDL A+L +LE  DVLFIDEIHRL + VEE+LY AMED
Sbjct: 70  FVIANELGVNLKQTSGPVIEKSGDLVAILNDLEPGDVLFIDEIHRLPMAVEEVLYSAMED 129

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F +D+M+G G ++RSV ++L  FTLI ATTR G+L+NPL+ RFGI   + +YE  DL  I
Sbjct: 130 FYIDIMIGSGETSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYEAGDLTEI 189

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           V+R A++  + +T EAA E+A+RSRGTPRIA RLL+RVRD+A++     I  +I D AL 
Sbjct: 190 VERTAEIFEMDITHEAAKELALRSRGTPRIANRLLKRVRDYAQIMGNGLIDDKITDQALS 249

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L +D+ G D +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GF+ 
Sbjct: 250 MLDVDQEGLDYVDQKILKTMIEVYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFVM 309

Query: 312 RTPRGRLLMPIAWQHLGIDI 331
           RT  GR+    A++HLG + 
Sbjct: 310 RTRTGRVATRKAYEHLGYEY 329


>gi|332202173|gb|EGJ16242.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           GA41317]
          Length = 323

 Score =  348 bits (893), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 170/323 (52%), Positives = 222/323 (68%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +  E+     LRP+ L E+ GQ +    L++FIEAAK R EALDHVL  GPPGLGKTT+A
Sbjct: 1   MGDEELVERTLRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMA 60

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            V+A ELGVN + TSGPVI KAGDL A+L +LE  DVLFIDEIHRL + VEE+LY AMED
Sbjct: 61  FVIANELGVNLKQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMED 120

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F +D+M+G G  +RSV + L  FTLI ATTR G+L+NPL+ RFGI   + +Y   DL  I
Sbjct: 121 FYIDIMIGAGEGSRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYAHADLTEI 180

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           V+R A +  + +T EAA E+A+RSRGTPRIA RLL+RVRDFA++     I   I D AL 
Sbjct: 181 VERTADIFEMEITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGNGVIDDVITDKALT 240

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L +D  G D +D + L  +   + GGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GFI 
Sbjct: 241 MLDVDHEGLDYVDQKILRTMIEMYSGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIM 300

Query: 312 RTPRGRLLMPIAWQHLGIDIPHR 334
           RT  GR+    A++HLG +   +
Sbjct: 301 RTRSGRVATAKAYEHLGYEYSEK 323


>gi|38233960|ref|NP_939727.1| Holliday junction DNA helicase B [Corynebacterium diphtheriae NCTC
           13129]
 gi|47606083|sp|P61530|RUVB_CORDI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|38200222|emb|CAE49906.1| holliday junction DNA-helicase [Corynebacterium diphtheriae]
          Length = 362

 Score =  348 bits (893), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 164/321 (51%), Positives = 223/321 (69%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           S E    + LRPR+L+EF GQ +    L + +  AK+R  A DHVL  GPPGLGKTT+A 
Sbjct: 36  SNEGEVETSLRPRSLDEFIGQPKVRDQLNLVLSGAKSRGVAPDHVLLSGPPGLGKTTMAM 95

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++A ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++   EE+LY AMEDF
Sbjct: 96  IIAYELGTSLRMTSGPALERAGDLAAMLSNLMEGDVLFIDEIHRMARPAEEMLYMAMEDF 155

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           ++D++VG+GP A S+ + L+ FTL+ ATTR G+LT PL+DRFG   ++ FYE+EDL  +V
Sbjct: 156 RIDVIVGKGPGATSIPLELAPFTLVGATTRSGMLTGPLRDRFGFTAQMEFYEVEDLTKVV 215

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R A + G+++  +AA EIA RSRGTPRIA RLLRRVRDFAEV     I    A AAL+ 
Sbjct: 216 VRAAAVLGVSIDHDAAVEIASRSRGTPRIANRLLRRVRDFAEVNADGHINLAAAQAALVV 275

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
             +D+MG D+LD   L  + +  GGGPVGI T++  + E    +E++ EPY+++ G + R
Sbjct: 276 FDVDEMGLDRLDRAVLEALIKGHGGGPVGINTLALAVGEEPSTVEEVCEPYLVRAGMVTR 335

Query: 313 TPRGRLLMPIAWQHLGIDIPH 333
           T RGR+    AW+HLG++ P 
Sbjct: 336 TGRGRVATATAWRHLGLEPPE 356


>gi|323350894|ref|ZP_08086552.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           sanguinis VMC66]
 gi|322122876|gb|EFX94582.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           sanguinis VMC66]
 gi|324992688|gb|EGC24609.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           sanguinis SK405]
          Length = 332

 Score =  348 bits (893), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 170/320 (53%), Positives = 230/320 (71%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +  E+     LRP+ L+E+ GQ +  + LK+FIEAAK R EALDH L  GPPGLGKTT+A
Sbjct: 10  MGDEELVERTLRPQYLQEYIGQDKVKNQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMA 69

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            V+A ELGVN + TSGPVI K+GDL A+L +LE  DVLFIDEIHRL + VEE+LY AMED
Sbjct: 70  FVIANELGVNLKQTSGPVIEKSGDLVAILNDLEPGDVLFIDEIHRLPMAVEEVLYSAMED 129

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F +D+M+G G ++RSV ++L  FTLI ATTR G+L+NPL+ RFGI   + +YE  DL  I
Sbjct: 130 FYIDIMIGSGETSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYEAGDLTEI 189

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           V+R A++  +A+T EAA E+A+RSRGTPRIA RLL+RVRD+A++     I  +I D AL 
Sbjct: 190 VERTAEIFEMAITHEAAKELALRSRGTPRIANRLLKRVRDYAQIMGNGLIDDKITDQALS 249

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L +D+ G D +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GF+ 
Sbjct: 250 MLDVDQEGLDYVDQKILKTMIEVYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFVM 309

Query: 312 RTPRGRLLMPIAWQHLGIDI 331
           RT  GR+    A++HLG + 
Sbjct: 310 RTRTGRVATRKAYEHLGYEY 329


>gi|111023846|ref|YP_706818.1| Holliday junction DNA helicase B [Rhodococcus jostii RHA1]
 gi|122955048|sp|Q0S1C6|RUVB_RHOSR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|110823376|gb|ABG98660.1| holliday junction DNA helicase [Rhodococcus jostii RHA1]
          Length = 365

 Score =  348 bits (893), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 162/331 (48%), Positives = 226/331 (68%), Gaps = 1/331 (0%)

Query: 3   DREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           D E  +S ++   D DI   LRP+ L +F GQ      L++ +  AK R    DH+L  G
Sbjct: 10  DEESPVSADLVAGDGDIEASLRPKNLHDFIGQPRVREQLQLVLTGAKMRGGTPDHILLSG 69

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKT++A ++A ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++   
Sbjct: 70  PPGLGKTSMAMIIAAELGSSLRLTSGPALERAGDLAAMLSNLVEGDVLFIDEIHRIARPA 129

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMEDF++D++VG+GP A S+ + ++ FTL+ ATTR G LT PL+DRFG    ++
Sbjct: 130 EEMLYLAMEDFRVDVVVGKGPGATSIPLEVAPFTLVGATTRSGALTGPLRDRFGFTAHMD 189

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FYE  +L+ I+ R A + G+ + +EA  EIA RSRGTPRIA RLLRRVRD+AEV     +
Sbjct: 190 FYEPAELQQILMRSAGILGVQLGEEAGAEIANRSRGTPRIANRLLRRVRDYAEVRADGVV 249

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           TREIA AAL    +D++G D+LD   L+ + R+FGGGPVG+ T++  + E    +E++ E
Sbjct: 250 TREIAHAALAVYDVDQLGLDRLDRSVLSALVRSFGGGPVGVSTLAVAVGEEPATVEEVCE 309

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           P++++ G I RTPRGR+    AW  LG+  P
Sbjct: 310 PFLVRAGMIARTPRGRVATAAAWTQLGLTPP 340


>gi|323143602|ref|ZP_08078279.1| Holliday junction DNA helicase RuvB [Succinatimonas hippei YIT
           12066]
 gi|322416665|gb|EFY07322.1| Holliday junction DNA helicase RuvB [Succinatimonas hippei YIT
           12066]
          Length = 379

 Score =  348 bits (893), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 172/314 (54%), Positives = 225/314 (71%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A+   LRP+TL+++ GQ +  S L++ + AAK R EALDHVL  GPPGLGKTTL+ ++A 
Sbjct: 50  AEDRALRPKTLKDYIGQEDVKSQLEIALAAAKKRGEALDHVLIFGPPGLGKTTLSNIIAN 109

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           ELGV+   TSGP + K GD AALLTNL+ RDV+FIDEIHRLS ++EE +YPAMED+Q+D+
Sbjct: 110 ELGVHLSQTSGPALEKKGDAAALLTNLQPRDVIFIDEIHRLSPVIEEFMYPAMEDYQVDI 169

Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA 196
           M GEGPSARS+KI LS FTLI ATT+ G LT+PL+ RFGI ++L++Y   +L  I++  A
Sbjct: 170 MTGEGPSARSIKIGLSPFTLIGATTKAGTLTSPLRARFGIILQLSYYTPSELFLIIKASA 229

Query: 197 KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAID 256
           K   + +  + A EIA RSRGTPRIA RLL+RVRD+AEV     I  EIA AAL    ID
Sbjct: 230 KKLKIKIDKDGAMEIAKRSRGTPRIANRLLKRVRDYAEVRGNGEINVEIAKAALDLQKID 289

Query: 257 KMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRG 316
             GFD  D +YL  +  +F GGPVG+E+++A L   R+ +E ++EPY+IQQGFIQRT  G
Sbjct: 290 PDGFDDFDRQYLRSVILDFNGGPVGVESLAASLGHDRETLESVVEPYLIQQGFIQRTRSG 349

Query: 317 RLLMPIAWQHLGID 330
           R+    A+   G+ 
Sbjct: 350 RVATKKAYDKFGLS 363


>gi|183603173|ref|ZP_02710483.2| holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           CDC1087-00]
 gi|183603560|ref|ZP_02718099.2| holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           CDC3059-06]
 gi|307126476|ref|YP_003878507.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           670-6B]
 gi|183570868|gb|EDT91396.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           CDC1087-00]
 gi|183576055|gb|EDT96583.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           CDC3059-06]
 gi|301793527|emb|CBW35902.1| Holliday junction DNA helicase, subunit B [Streptococcus pneumoniae
           INV104]
 gi|301799403|emb|CBW31939.1| Holliday junction DNA helicase, subunit B [Streptococcus pneumoniae
           OXC141]
 gi|301801200|emb|CBW33874.1| Holliday junction DNA helicase, subunit B [Streptococcus pneumoniae
           INV200]
 gi|306483538|gb|ADM90407.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           670-6B]
 gi|327390676|gb|EGE89016.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           GA04375]
 gi|332075924|gb|EGI86391.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           GA17570]
 gi|332076706|gb|EGI87168.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           GA17545]
 gi|332203425|gb|EGJ17492.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           GA47368]
          Length = 323

 Score =  348 bits (893), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 170/323 (52%), Positives = 221/323 (68%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +  E+     LRP+ L E+ GQ +    L++FIEAAK R EALDHVL  GPPGLGKTT+A
Sbjct: 1   MGDEELVERTLRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMA 60

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            V+A ELGVN + TSGPVI KAGDL A+L  LE  DVLFIDEIHRL + VEE+LY AMED
Sbjct: 61  FVIANELGVNLKQTSGPVIEKAGDLVAILNELEPGDVLFIDEIHRLPMSVEEVLYSAMED 120

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F +D+M+G G  +RSV + L  FTLI ATTR G+L+NPL+ RFGI   + +Y   DL  I
Sbjct: 121 FYIDIMIGAGEGSRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYAHADLTEI 180

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           V+R A +  + +T EAA E+A+RSRGTPRIA RLL+RVRDFA++     I   I D AL 
Sbjct: 181 VERTADIFEMEITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGNGVIDDIITDKALT 240

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L +D  G D +D + L  +   + GGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GFI 
Sbjct: 241 MLDVDHEGLDYVDQKILRTMIEMYSGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIM 300

Query: 312 RTPRGRLLMPIAWQHLGIDIPHR 334
           RT  GR+    A++HLG +   +
Sbjct: 301 RTRSGRVATAKAYEHLGYEYSEK 323


>gi|324990050|gb|EGC21991.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           sanguinis SK353]
 gi|324995783|gb|EGC27694.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           sanguinis SK678]
 gi|325686360|gb|EGD28390.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           sanguinis SK72]
 gi|332363661|gb|EGJ41441.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           sanguinis SK49]
          Length = 332

 Score =  348 bits (893), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 169/320 (52%), Positives = 228/320 (71%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +  E+     LRP+ L+E+ GQ +    LK+FIEAAK R EALDH L  GPPGLGKTT+A
Sbjct: 10  MGDEELVERTLRPQYLQEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMA 69

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            V+A ELGVN + TSGPVI K+GDL A+L +LE  DVLFIDEIHRL + VEE+LY AMED
Sbjct: 70  FVIANELGVNLKQTSGPVIEKSGDLVAILNDLEPGDVLFIDEIHRLPMAVEEVLYSAMED 129

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F +D+M+G G ++RSV ++L  FTLI ATTR G+L+NPL+ RFGI   + +YE  DL  I
Sbjct: 130 FYIDIMIGSGETSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYEAGDLTEI 189

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           V+R A++  + +T EAA E+A+RSRGTPRIA RLL+RVRD+A++     I  +I D AL 
Sbjct: 190 VERTAEIFEMDITHEAAKELALRSRGTPRIANRLLKRVRDYAQIMGNGLIDDKITDQALS 249

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L +D+ G D +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GF+ 
Sbjct: 250 MLDVDQEGLDYVDQKILKTMIEVYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFVM 309

Query: 312 RTPRGRLLMPIAWQHLGIDI 331
           RT  GR+    A++HLG + 
Sbjct: 310 RTRTGRVATRKAYEHLGYEY 329


>gi|313884066|ref|ZP_07817832.1| Holliday junction DNA helicase RuvB [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312620513|gb|EFR31936.1| Holliday junction DNA helicase RuvB [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 343

 Score =  348 bits (893), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 164/337 (48%), Positives = 223/337 (66%), Gaps = 9/337 (2%)

Query: 2   MDREGLLSRNVSQEDADISL--------LRPRTLEEFTGQVEACSNLKVFIEAAKARAEA 53
           MD E ++S     ED D+          LRP+ L E+ GQ +    L ++I+AA+ R EA
Sbjct: 1   MD-ERIISGQSLPEDIDLEADNSSQHFSLRPKFLREYIGQNKVKEALAIYIQAARQRQEA 59

Query: 54  LDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDE 113
           LDHVL  GPPGLGKTTLA V+A EL V  ++TSGP I + GDL ALL  L   D+LFIDE
Sbjct: 60  LDHVLLYGPPGLGKTTLAMVIANELEVGIQTTSGPAIERPGDLIALLNELNPGDILFIDE 119

Query: 114 IHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           IHRL  +VEE+LY AMED+ +D++VG+G +++ +   L  FTLI ATTR G+LT PL++R
Sbjct: 120 IHRLPRVVEEVLYSAMEDYFVDIVVGQGSTSQPIHFQLPPFTLIGATTRAGMLTQPLRER 179

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
           FGI + + +Y   DL+ IV+R A +  + +  + A EI+ RSRGTPR+A R+LRRVRDFA
Sbjct: 180 FGIVMHMEYYSQADLQLIVERSANIFDVGIESQGALEISRRSRGTPRVANRILRRVRDFA 239

Query: 234 EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
           +V H   IT+ +   AL  L ID  G DQ D + L  +   + GGPVG+ TI+  +SE  
Sbjct: 240 QVKHDGVITQAVTQEALKLLEIDDKGLDQTDRKLLKAMIDLYQGGPVGLNTIAVNISEDI 299

Query: 294 DAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
             +ED+ EPY++Q GF+QRTPRGR++   A+ HL I+
Sbjct: 300 GTVEDMYEPYLLQIGFLQRTPRGRVVTRQAYDHLKIE 336


>gi|260893477|ref|YP_003239574.1| Holliday junction DNA helicase RuvB [Ammonifex degensii KC4]
 gi|260865618|gb|ACX52724.1| Holliday junction DNA helicase RuvB [Ammonifex degensii KC4]
          Length = 347

 Score =  348 bits (893), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 176/333 (52%), Positives = 231/333 (69%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M     L++    +E+    L LRPR LEEF GQ +    L++  EAA+ R E LDHVL 
Sbjct: 1   MKGEPRLVAAEAGEEERQFELSLRPRRLEEFVGQEKVKEALRIACEAARRRREPLDHVLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA+++A E+GVN R TSGP I + GDLAA+LT+L   DVLFIDEIHRL  
Sbjct: 61  SGPPGLGKTTLARIIAAEMGVNVRVTSGPAIERPGDLAAILTSLSPGDVLFIDEIHRLHR 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEEILYPAMED  LDL++G+GP AR+V+++L  FTL+ ATTR+GLL++PL+DRFG+   
Sbjct: 121 AVEEILYPAMEDRALDLVIGKGPGARAVRLSLPPFTLVGATTRMGLLSSPLRDRFGLAFH 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L +Y   +L+ I++R A + G+ +  E A  IA R+RGTPR+A RLLRRVRD+ EV    
Sbjct: 181 LEYYSPAELERILERTADILGIKLLPEGAAVIARRARGTPRVAIRLLRRVRDYVEVKAEG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT E A  AL  LA+D++G D +D RYL  +   FGGGP G+E ++A   E    +E++
Sbjct: 241 IITEEAAVEALDFLAVDELGLDPVDRRYLRCLIERFGGGPAGVEALAASTGEEVSTLEEV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           +EPY++Q G I RTPRGRL  P A++HLGI  P
Sbjct: 301 VEPYLLQVGLIVRTPRGRLATPEAYRHLGIKPP 333


>gi|322392598|ref|ZP_08066058.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           peroris ATCC 700780]
 gi|321144590|gb|EFX39991.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           peroris ATCC 700780]
          Length = 332

 Score =  348 bits (893), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 171/323 (52%), Positives = 226/323 (69%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +  E+     LRP+ L E+ GQ +    L++FIEAAK R EALDHVL  GPPGLGKTT+A
Sbjct: 10  MGDEELVERTLRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMA 69

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            V+A ELGVN + TSGPVI KAGDL A+L +LE  DVLFIDEIHRL + VEE+LY AMED
Sbjct: 70  FVIANELGVNLKQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMED 129

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F +D+M+G G ++RSV ++L  FTLI ATTR G+L+NPL+ RFGI   + +Y  +DL  I
Sbjct: 130 FYIDIMIGAGEASRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYTHDDLTEI 189

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           V+R A +  + +T EAA E+A+RSRGTPRIA RLL+RVRDFA++     I   I D AL 
Sbjct: 190 VERTADIFEMEITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGDGLIDDVITDKALT 249

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L +D  G D +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GFI 
Sbjct: 250 MLDVDHEGLDYVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIM 309

Query: 312 RTPRGRLLMPIAWQHLGIDIPHR 334
           RT  GR+    A++HLG +   +
Sbjct: 310 RTRSGRVATAKAYEHLGYEYIEK 332


>gi|222152256|ref|YP_002561431.1| Holliday junction DNA helicase RuvB [Streptococcus uberis 0140J]
 gi|254767443|sp|B9DSU1|RUVB_STRU0 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|222113067|emb|CAR40423.1| Holliday junction DNA helicase, subunit B [Streptococcus uberis
           0140J]
          Length = 334

 Score =  348 bits (893), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 166/323 (51%), Positives = 227/323 (70%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +  E+     LRP+ L+E+ GQ +  + L +FIEAAK R E+LDHVL  GPPGLGKTT+A
Sbjct: 10  MGDEELIERTLRPQYLKEYIGQDKVKNQLSIFIEAAKLRDESLDHVLLFGPPGLGKTTMA 69

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            V+A ELGVN + TSGP I KAGDL A+L +LE  DVLFIDEIHR+ + VEE+LY AMED
Sbjct: 70  FVIANELGVNLKQTSGPAIEKAGDLVAILNDLEPGDVLFIDEIHRMPMAVEEVLYSAMED 129

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F +D+M+G G ++RSV + L  FTLI ATTR G+L+NPL+ RFGI   + +Y+++DL  I
Sbjct: 130 FYIDIMIGAGDTSRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYQVDDLTEI 189

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           V+R + +  +A+  EAA E+A RSRGTPRIA RLL+RVRD+A++     IT+E+ D AL 
Sbjct: 190 VERTSDIFEMAIVHEAALELAKRSRGTPRIANRLLKRVRDYAQIMGDGVITKEMTDKALE 249

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L +D  G D +D + L  +   + GGPVG+ T+S  ++E RD +ED+ EPY+IQ+GFI 
Sbjct: 250 MLDVDHEGLDYVDQKILRTMIEMYNGGPVGLGTLSVNIAEERDTVEDMYEPYLIQKGFIM 309

Query: 312 RTPRGRLLMPIAWQHLGIDIPHR 334
           RT  GR+    A++HL   +  +
Sbjct: 310 RTRTGRVATEKAYRHLKYPLDTK 332


>gi|25028329|ref|NP_738383.1| Holliday junction DNA helicase B [Corynebacterium efficiens YS-314]
 gi|44888502|sp|Q8FPK5|RUVB_COREF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|23493614|dbj|BAC18583.1| holliday junction DNA-helicase RuvB [Corynebacterium efficiens
           YS-314]
          Length = 360

 Score =  348 bits (893), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 161/332 (48%), Positives = 228/332 (68%), Gaps = 1/332 (0%)

Query: 3   DREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           D +  +  N+  +D +  + LRPR+L+EF GQ +    L + +  AK R    DHVL  G
Sbjct: 23  DPDTSVDANIQPDDVEAEVTLRPRSLDEFIGQPKVRDQLSLVLTGAKKRGVVPDHVLLSG 82

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTT+A ++A+ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++   
Sbjct: 83  PPGLGKTTMAMIIAQELGTSLRMTSGPALERAGDLAAMLSNLMEGDVLFIDEIHRIARPA 142

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMEDF++D++VG+GP A S+ + +  FTL+ ATTR G+LT PL+DRFG   ++ 
Sbjct: 143 EEMLYMAMEDFRIDVIVGKGPGATSIPLEIPPFTLVGATTRSGMLTGPLRDRFGFTAQME 202

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY++ DL  +V+R A++  + +  +AA EIA RSRGTPRIA RLLRRVRDFAEV     I
Sbjct: 203 FYDVADLTRVVKRTARILEVGIDADAAVEIASRSRGTPRIANRLLRRVRDFAEVHADGHI 262

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T   A+AAL+   +D++G D+LD   L  + R  GGGPVG+ T++  + E    +E++ E
Sbjct: 263 TLGAANAALIVFDVDELGLDRLDRAVLDALVRGHGGGPVGVNTLAVAVGEEPATVEEVCE 322

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           PY+++ G I RT RGR+    AW+HLG++ P 
Sbjct: 323 PYLVRAGMIARTGRGRVATAAAWRHLGLEPPE 354


>gi|157150805|ref|YP_001449430.1| Holliday junction DNA helicase RuvB [Streptococcus gordonii str.
           Challis substr. CH1]
 gi|262281747|ref|ZP_06059516.1| Holliday junction DNA helicase RuvB [Streptococcus sp. 2_1_36FAA]
 gi|189046055|sp|A8AUH0|RUVB_STRGC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|157075599|gb|ABV10282.1| Holliday junction DNA helicase RuvB [Streptococcus gordonii str.
           Challis substr. CH1]
 gi|262262201|gb|EEY80898.1| Holliday junction DNA helicase RuvB [Streptococcus sp. 2_1_36FAA]
          Length = 332

 Score =  348 bits (893), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 172/328 (52%), Positives = 229/328 (69%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L +  +  E+     LRP+ L+E+ GQ +  + LK+FIEAAK R EALDH L  GPPGLG
Sbjct: 5   LDNEQMMDEEMVERTLRPQYLQEYIGQDKVKNQLKIFIEAAKLRDEALDHALLFGPPGLG 64

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTT+A V+A ELGVN + TSGPVI KAGDL A+L +LE  DVLFIDEIHRL + VEE+LY
Sbjct: 65  KTTMAFVIANELGVNIKQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMAVEEVLY 124

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            AMEDF +D+M+G G + RSV ++L  FTLI ATTR G+L+NPL+ RFGI   + +YE  
Sbjct: 125 SAMEDFYIDIMIGSGDANRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYEEA 184

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           DL  IV+R A++  + +T EAA E+A+RSRGTPRIA RLL+RVRD+A++     I   I 
Sbjct: 185 DLTEIVERTAEIFEMDITHEAAKELALRSRGTPRIANRLLKRVRDYAQIMGNGLIDETIT 244

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           D AL  L +D  G D +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ
Sbjct: 245 DQALSMLDVDHEGLDYVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQ 304

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           +GFI RT  GR+    A++HLG +   +
Sbjct: 305 KGFIMRTRTGRVATRKAYEHLGYEYMEK 332


>gi|229496853|ref|ZP_04390562.1| holliday junction DNA helicase RuvB [Porphyromonas endodontalis
           ATCC 35406]
 gi|229316264|gb|EEN82188.1| holliday junction DNA helicase RuvB [Porphyromonas endodontalis
           ATCC 35406]
          Length = 344

 Score =  348 bits (893), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 174/317 (54%), Positives = 224/317 (70%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           ++     LRP +   F GQ     NL VF++AA  R ++LDHVL  GPPGLGKTTL+ ++
Sbjct: 17  DEQIEEALRPISFRSFRGQDTVVENLSVFVQAAAMRGDSLDHVLLHGPPGLGKTTLSNII 76

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A ELGV  + TSGPV+ K GDLA LLT+LE R VLFIDEIHRLS IVEE LY AMED+++
Sbjct: 77  AAELGVGIKITSGPVLDKPGDLAGLLTSLEPRGVLFIDEIHRLSPIVEEYLYSAMEDYRI 136

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D+M+ +GP ARS++I+L+ FTL+ ATTR GLLT PL+ RFGI + L +Y+ + +  IV R
Sbjct: 137 DIMIDKGPGARSIQIDLNPFTLVGATTRSGLLTAPLRARFGINLHLEYYDTKTIAGIVLR 196

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A + G+A ++EAA EIA RSRGTPRIA  LLRRVRDFA+V    TI  EIA  +L  L 
Sbjct: 197 SAGILGVACSEEAAAEIARRSRGTPRIANALLRRVRDFAQVRGNGTIDSEIAVFSLEALN 256

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           ID  G D +D + LT I   FGGGPVG+ TI+  +SE    IE++ EP++I++GFI+RTP
Sbjct: 257 IDSCGLDNIDHKLLTTIIDKFGGGPVGVSTIATAMSEDVGTIEEVYEPFLIKEGFIKRTP 316

Query: 315 RGRLLMPIAWQHLGIDI 331
           RGR     A++HLG  I
Sbjct: 317 RGREATAHAYEHLGRTI 333


>gi|237742214|ref|ZP_04572695.1| holliday junction DNA helicase ruvB [Fusobacterium sp. 4_1_13]
 gi|256845487|ref|ZP_05550945.1| Holliday junction DNA helicase RuvB [Fusobacterium sp. 3_1_36A2]
 gi|294785207|ref|ZP_06750495.1| holliday junction DNA helicase RuvB [Fusobacterium sp. 3_1_27]
 gi|229429862|gb|EEO40074.1| holliday junction DNA helicase ruvB [Fusobacterium sp. 4_1_13]
 gi|256719046|gb|EEU32601.1| Holliday junction DNA helicase RuvB [Fusobacterium sp. 3_1_36A2]
 gi|294486921|gb|EFG34283.1| holliday junction DNA helicase RuvB [Fusobacterium sp. 3_1_27]
          Length = 338

 Score =  348 bits (893), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 161/324 (49%), Positives = 227/324 (70%), Gaps = 1/324 (0%)

Query: 5   EGLLSR-NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E ++S   +  E      LRP++ +E+ GQ      + + I+AA+ R   +DH+L  GPP
Sbjct: 2   ERIISELEMPNEVEIQKSLRPKSFDEYIGQENLKEKMSISIKAAQKRNMVVDHILLYGPP 61

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA V+A E+  N + TSGP++ KAGDLAA+LT+LE+ D+LFIDEIHRL+  VEE
Sbjct: 62  GLGKTTLAGVIANEMKANLKITSGPILEKAGDLAAILTSLEENDILFIDEIHRLNSTVEE 121

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILYPAMED +LD+++G+GPSA+S++I L  FTLI ATTR GLL+ PL+DRFG+  ++ +Y
Sbjct: 122 ILYPAMEDGELDIIIGKGPSAKSIRIELPPFTLIGATTRAGLLSAPLRDRFGVSHKMEYY 181

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
              ++K+I+ RGAK+ G+ + ++ A EI+ RSRGTPRIA RLL+RVRD+ E+    TI +
Sbjct: 182 NENEIKSIIIRGAKILGVKINEDGAIEISKRSRGTPRIANRLLKRVRDYCEIKGNGTIDK 241

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
             A  AL  L +D  G D LD   +  I  N+ GGPVGIET+S  L E R  +E++ EPY
Sbjct: 242 LSAKNALDMLGVDSNGLDDLDRNIINSIIENYDGGPVGIETLSLLLGEDRRTLEEVYEPY 301

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHL 327
           +++ GF++RT RGR++   A+QH 
Sbjct: 302 LVKIGFLKRTNRGRIVTSKAYQHF 325


>gi|289168690|ref|YP_003446959.1| holliday junction DNA helicase RuvB [Streptococcus mitis B6]
 gi|288908257|emb|CBJ23099.1| holliday junction DNA helicase RuvB [Streptococcus mitis B6]
          Length = 323

 Score =  348 bits (893), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 170/323 (52%), Positives = 224/323 (69%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +  E+     LRP+ L E+ GQ +    L++FIEAAK R EALDHVL  GPPGLGKTT+A
Sbjct: 1   MGDEELVERTLRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMA 60

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            V+A ELGVN + TSGPVI KAGDL A+L +L+  DVLFIDEIHRL + VEE+LY AMED
Sbjct: 61  FVIANELGVNLKQTSGPVIEKAGDLVAILNDLDPGDVLFIDEIHRLPMSVEEVLYSAMED 120

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F +D+M+G G  +RSV + L  FTLI ATTR G+L+NPL+ RFGI   + +Y+  DL  I
Sbjct: 121 FYIDIMIGAGEGSRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYDHADLTEI 180

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           V+R A +  + +T EAA E+A+RSRGTPRIA RLL+RVRDFA++     I   I D AL 
Sbjct: 181 VERTADIFEMEITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGNGVIDDLITDKALT 240

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L +D  G D +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GFI 
Sbjct: 241 MLDVDHEGLDYVDQKILRTMIEIYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIM 300

Query: 312 RTPRGRLLMPIAWQHLGIDIPHR 334
           RT  GR+    A++HLG +   +
Sbjct: 301 RTRSGRVATAKAYEHLGYEYNEK 323


>gi|62390541|ref|YP_225943.1| Holliday junction DNA helicase RuvB [Corynebacterium glutamicum
           ATCC 13032]
 gi|41325879|emb|CAF20042.1| Holliday junction resolvasome helicase subunit [Corynebacterium
           glutamicum ATCC 13032]
          Length = 363

 Score =  348 bits (893), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 160/327 (48%), Positives = 226/327 (69%), Gaps = 1/327 (0%)

Query: 8   LSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           +  N+  ++ D  + LRP++L EF GQ +    L + +  AK R    DHVL  GPPGLG
Sbjct: 31  VDANLKPDEYDAEVTLRPKSLTEFIGQPKVRDQLSLVLTGAKNRGVVPDHVLLSGPPGLG 90

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTT+A ++A+ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++   EE+LY
Sbjct: 91  KTTMAMIIAQELGTSLRMTSGPALERAGDLAAMLSNLMEGDVLFIDEIHRIARPAEEMLY 150

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            AMEDF++D++VG+GP A S+ + +  FTL+ ATTR G+LT PL+DRFG   ++ FY++ 
Sbjct: 151 MAMEDFRIDVIVGKGPGATSIPLEIPPFTLVGATTRSGMLTGPLRDRFGFTAQMEFYDVP 210

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           DL  +V+R AK+  + + ++AA EIA RSRGTPRIA RLLRRVRDFAEV     IT   A
Sbjct: 211 DLTKVVKRTAKILDVGIDNDAAVEIASRSRGTPRIANRLLRRVRDFAEVHADGHITMGAA 270

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           +AAL+   +D++G D+LD   L  + R  GGGPVG+ T++  + E    +E++ EPY+++
Sbjct: 271 NAALVVFDVDEVGLDRLDRAVLDALIRGHGGGPVGVNTLAVAVGEEPGTVEEVCEPYLVR 330

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            G I RT RGR+    AW+HLG++ P 
Sbjct: 331 AGMIARTGRGRVATAAAWRHLGLEPPE 357


>gi|283470917|emb|CAQ50128.1| holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus ST398]
          Length = 334

 Score =  348 bits (893), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 166/324 (51%), Positives = 231/324 (71%), Gaps = 1/324 (0%)

Query: 5   EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E ++ +++  E+ D  L LRP  L ++ GQ    SNL+VFI+AAK R E LDHVL  GPP
Sbjct: 3   ERMVDQSMHSEETDFELSLRPTRLRQYIGQNSIKSNLEVFIKAAKLRHEPLDHVLLFGPP 62

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTL+ ++A E+ VN R+ SGP + + GDLAA+L+ L+  DVLFIDEIHRLS +VEE
Sbjct: 63  GLGKTTLSNIIANEMEVNIRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSVVEE 122

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LYPAMEDF LD+++G+G  ARS++I+L  FTL+ ATTR G LT PL+DRFG+ +RL +Y
Sbjct: 123 VLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATTRAGSLTGPLRDRFGVHLRLEYY 182

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
              DLK I+ R A++ G  + +E+A E+A RSRGTPR+A RLL+RVRDF +V   + I  
Sbjct: 183 NESDLKEIIIRTAEVLGTGIDEESAIELAKRSRGTPRVANRLLKRVRDFQQVNEDEQIYI 242

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           E    AL  L +D+ G D +D + +  I + + GGPVG++ I+  + E R  IED+ EP+
Sbjct: 243 ETTKHALGLLQVDQHGLDYIDHKMMNCIIKQYNGGPVGLDAIAVTIGEERITIEDVYEPF 302

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHL 327
           +IQ+GF++RTPRGR   P+A++H 
Sbjct: 303 LIQKGFLERTPRGRKATPLAYEHF 326


>gi|300858593|ref|YP_003783576.1| holliday junction resolvasome helicase subunit B [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686047|gb|ADK28969.1| Holliday junction resolvasome helicase subunit B [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302206305|gb|ADL10647.1| Holliday junction ATP-dependent DNA helicase ruvB [Corynebacterium
           pseudotuberculosis C231]
 gi|302330862|gb|ADL21056.1| Holliday junction ATP-dependent DNA helicase ruvB [Corynebacterium
           pseudotuberculosis 1002]
 gi|308276547|gb|ADO26446.1| Holliday junction ATP-dependent DNA helicase ruvB [Corynebacterium
           pseudotuberculosis I19]
          Length = 365

 Score =  348 bits (892), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 164/325 (50%), Positives = 222/325 (68%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           +R  + E+   + LRPR++EEF GQ +    L + +  AK R    DHVL  GPPGLGKT
Sbjct: 31  ARQQAGENDAETTLRPRSIEEFIGQPKVRGQLNLVLTGAKKRGVTPDHVLLSGPPGLGKT 90

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           T+A ++A ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++   EE+LY A
Sbjct: 91  TMAMIIAYELGTSLRMTSGPALERAGDLAAMLSNLMEGDVLFIDEIHRMARPAEEMLYMA 150

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           MEDF++D++VG+GP A S+ + L+ FTL+ ATTR G+LT PL+DRFG   ++ FYE  DL
Sbjct: 151 MEDFRIDVIVGKGPGATSIPLELAPFTLVGATTRSGMLTGPLRDRFGFTAQMEFYENSDL 210

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             +V R AK+ G+ + D AA EIA RSRGTPRIA RLLRRVRDFAEV     I  E A +
Sbjct: 211 TKVVLRAAKILGVTIDDAAAIEIASRSRGTPRIANRLLRRVRDFAEVHSDGHIDVEAARS 270

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL+   +D+ G D+LDL  L  + +  GGGPVG+ T++  + E    +E++ EPY+++ G
Sbjct: 271 ALVVFDVDEKGLDRLDLAVLEALIKGHGGGPVGVNTLAIAVGEEPSTVEEVCEPYLVRAG 330

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIPH 333
            I RT RGR+    AW+HLG+  P 
Sbjct: 331 MITRTGRGRVATAAAWRHLGLVPPE 355


>gi|322374043|ref|ZP_08048577.1| holliday junction DNA helicase RuvB [Streptococcus sp. C150]
 gi|321277009|gb|EFX54080.1| holliday junction DNA helicase RuvB [Streptococcus sp. C150]
          Length = 334

 Score =  348 bits (892), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 164/323 (50%), Positives = 227/323 (70%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +  E+     LRP+  +E+ GQ +    LK+FIEAAK R EALDH L  GPPGLGKTT+A
Sbjct: 10  LGDEEYVERTLRPQYFKEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMA 69

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            V+A E+GVN + TSGP I KAGDL A+L +LE  D+LFIDEIHR+ + VEE+LY AMED
Sbjct: 70  FVIANEMGVNLKQTSGPAIEKAGDLVAILNDLEPGDILFIDEIHRMPMAVEEVLYSAMED 129

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + +D+M+G G ++RSV + L  FTL+ ATTR G+L+NPL+ RFGI   + +YE+ DL  I
Sbjct: 130 YYIDIMIGAGETSRSVHLELPPFTLVGATTRAGMLSNPLRARFGINGHMEYYELPDLTEI 189

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           V+R +++  + +T EAA E+A RSRGTPRIA RLL+RVRD+A++     I  +IAD AL 
Sbjct: 190 VERTSEIFEMTITPEAALELARRSRGTPRIANRLLKRVRDYAQIMGNGIIDDKIADKALT 249

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L +D+ G D +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GFI 
Sbjct: 250 MLDVDREGLDYVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIM 309

Query: 312 RTPRGRLLMPIAWQHLGIDIPHR 334
           RT  GR+    A++H+G D   +
Sbjct: 310 RTRTGRVATAKAYEHMGYDYKEQ 332


>gi|125716944|ref|YP_001034077.1| Holliday junction DNA helicase RuvB [Streptococcus sanguinis SK36]
 gi|166231561|sp|A3CK22|RUVB_STRSV RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|125496861|gb|ABN43527.1| Holliday junction DNA helicase ruvB, putative [Streptococcus
           sanguinis SK36]
 gi|325695281|gb|EGD37181.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           sanguinis SK150]
 gi|327460091|gb|EGF06430.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           sanguinis SK1]
 gi|327472240|gb|EGF17677.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           sanguinis SK408]
 gi|327488682|gb|EGF20482.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           sanguinis SK1058]
          Length = 332

 Score =  348 bits (892), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 170/320 (53%), Positives = 229/320 (71%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +  E+     LRP+ L+E+ GQ +    LK+FIEAAK R EALDH L  GPPGLGKTT+A
Sbjct: 10  MGDEELVERTLRPQYLQEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMA 69

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            V+A ELGVN + TSGPVI K+GDL A+L +LE  DVLFIDEIHRL + VEE+LY AMED
Sbjct: 70  FVIANELGVNLKQTSGPVIEKSGDLVAILNDLEPGDVLFIDEIHRLPMAVEEVLYSAMED 129

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F +D+M+G G ++RSV ++L  FTLI ATTR G+L+NPL+ RFGI   + +YE  DL  I
Sbjct: 130 FYIDIMIGSGETSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYEAGDLTEI 189

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           V+R A++  +A+T EAA E+A+RSRGTPRIA RLL+RVRD+A++     I  +I D AL 
Sbjct: 190 VERTAEIFEMAITHEAAKELALRSRGTPRIANRLLKRVRDYAQIMGNGLIDDKITDQALS 249

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L +D+ G D +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GF+ 
Sbjct: 250 MLDVDQEGLDYVDQKILKTMIEVYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFVM 309

Query: 312 RTPRGRLLMPIAWQHLGIDI 331
           RT  GR+    A++HLG + 
Sbjct: 310 RTRTGRVATRKAYEHLGYEY 329


>gi|332360215|gb|EGJ38029.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           sanguinis SK1056]
          Length = 332

 Score =  348 bits (892), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 169/320 (52%), Positives = 229/320 (71%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +  E+     LRP+ L+E+ GQ +  + LK+FIEAAK R EALDH L  GPPGLGKTT+A
Sbjct: 10  MGDEELVERTLRPQYLQEYIGQDKVKNQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMA 69

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            V+A ELGVN + TSGPVI K+GDL A+L +LE  DVLFIDEIHRL + VEE+LY AMED
Sbjct: 70  FVIANELGVNLKQTSGPVIEKSGDLVAILNDLEPGDVLFIDEIHRLPMAVEEVLYSAMED 129

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F +D+M+G G ++RSV ++L  FTLI ATTR G+L+NPL+ RFGI   + +YE  DL  I
Sbjct: 130 FYIDIMIGSGETSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYEAGDLTEI 189

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           V+R A++  + +T EAA E+A+RSRGTPRIA RLL+RVRD+A++     I  +I D AL 
Sbjct: 190 VERTAEIFEMDITHEAAKELALRSRGTPRIANRLLKRVRDYAQIMGNGLIDDKITDQALS 249

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L +D+ G D +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GF+ 
Sbjct: 250 MLDVDQEGLDYVDQKILKTMIEVYGGGPVGLGTLSINIAEERETVEDMYEPYLIQKGFVM 309

Query: 312 RTPRGRLLMPIAWQHLGIDI 331
           RT  GR+    A++HLG + 
Sbjct: 310 RTRTGRVATRKAYEHLGYEY 329


>gi|322377193|ref|ZP_08051685.1| holliday junction DNA helicase RuvB [Streptococcus sp. M334]
 gi|321281906|gb|EFX58914.1| holliday junction DNA helicase RuvB [Streptococcus sp. M334]
          Length = 332

 Score =  348 bits (892), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 171/323 (52%), Positives = 223/323 (69%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +  E+     LRP+ L E+ GQ +    L++FIEAAK R EALDHVL  GPPGLGKTT+A
Sbjct: 10  MGDEELVERTLRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMA 69

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            V+A ELGVN + TSGPVI KAGDL A+L +LE  DVLFIDEIHRL + VEE+LY AMED
Sbjct: 70  FVIANELGVNLKQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMED 129

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F +D+M+G G  +RSV + L  FTLI ATTR G+L+NPL+ RFGI   + +Y   DL  I
Sbjct: 130 FYIDIMIGAGEGSRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYAHADLTEI 189

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           V+R A +  + +T EAA E+A+RSRGTPRIA RLL+RVRDFA++     I   I D AL 
Sbjct: 190 VERTADIFEMEITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGNGVIDDVITDKALT 249

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L +D  G D +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GFI 
Sbjct: 250 MLDVDHEGLDYVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIM 309

Query: 312 RTPRGRLLMPIAWQHLGIDIPHR 334
           RT  GR+    A++HLG +   +
Sbjct: 310 RTRSGRVATAKAYEHLGYEYNEK 332


>gi|327467985|gb|EGF13475.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           sanguinis SK330]
          Length = 332

 Score =  348 bits (892), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 169/320 (52%), Positives = 228/320 (71%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +  E+     LRP+ L+E+ GQ +    LK+FIEAAK R EALDH L  GPPGLGKTT+A
Sbjct: 10  MGDEELVERTLRPQYLQEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMA 69

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            V+A ELGVN + TSGPVI K+GDL A+L +LE  DVLFIDEIHRL + VEE+LY AMED
Sbjct: 70  FVIANELGVNLKQTSGPVIEKSGDLVAILNDLEPGDVLFIDEIHRLPMAVEEVLYSAMED 129

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F +D+M+G G ++RSV ++L  FTLI ATTR G+L+NPL+ RFGI   + +YE  DL  I
Sbjct: 130 FYIDIMIGSGETSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYEAGDLTEI 189

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           V+R A++  + +T EAA E+A+RSRGTPRIA RLL+RVRD+A++     I  +I D AL 
Sbjct: 190 VERTAEIFEMDITHEAAKELALRSRGTPRIANRLLKRVRDYAQIMGNGLIDDKITDQALS 249

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L +D+ G D +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GF+ 
Sbjct: 250 MLDVDQEGLDYVDQKILKTMIEVYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFVI 309

Query: 312 RTPRGRLLMPIAWQHLGIDI 331
           RT  GR+    A++HLG + 
Sbjct: 310 RTRTGRVATRKAYEHLGYEY 329


>gi|182683239|ref|YP_001834986.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           CGSP14]
 gi|303255046|ref|ZP_07341122.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           BS455]
 gi|303259368|ref|ZP_07345345.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           SP-BS293]
 gi|303261123|ref|ZP_07347072.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           SP14-BS292]
 gi|303263451|ref|ZP_07349374.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           BS397]
 gi|303265743|ref|ZP_07351641.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           BS457]
 gi|303267826|ref|ZP_07353628.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           BS458]
 gi|238691188|sp|B2ISI4|RUVB_STRPS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|182628573|gb|ACB89521.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           CGSP14]
 gi|302597876|gb|EFL64946.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           BS455]
 gi|302637960|gb|EFL68446.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           SP14-BS292]
 gi|302639302|gb|EFL69760.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           SP-BS293]
 gi|302642522|gb|EFL72867.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           BS458]
 gi|302644651|gb|EFL74900.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           BS457]
 gi|302647224|gb|EFL77448.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           BS397]
          Length = 332

 Score =  348 bits (892), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 171/323 (52%), Positives = 222/323 (68%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +  E+     LRP+ L E+ GQ +    L++FIEAAK R EALDHVL  GPPGLGKTT+A
Sbjct: 10  MGDEELVERTLRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMA 69

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            V+A ELGVN + TSGPVI KAGDL A+L  LE  DVLFIDEIHRL + VEE+LY AMED
Sbjct: 70  FVIANELGVNLKQTSGPVIEKAGDLVAILNELEPGDVLFIDEIHRLPMSVEEVLYSAMED 129

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F +D+M+G G  +RSV + L  FTLI ATTR G+L+NPL+ RFGI   + +Y   DL  I
Sbjct: 130 FYIDIMIGAGEGSRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYAHADLTEI 189

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           V+R A +  + +T EAA E+A+RSRGTPRIA RLL+RVRDFA++     I   I D AL 
Sbjct: 190 VERTADIFEMEITHEAASELALRSRGTPRIANRLLKRVRDFAQIVGNGVIDDVITDKALT 249

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L +D  G D +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GFI 
Sbjct: 250 MLDVDHEGLDYVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIM 309

Query: 312 RTPRGRLLMPIAWQHLGIDIPHR 334
           RT  GR+    A++HLG +   +
Sbjct: 310 RTRSGRMATAKAYEHLGYEYNEK 332


>gi|162146623|ref|YP_001601082.1| Holliday junction DNA helicase RuvB [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161785198|emb|CAP54744.1| Holliday junction ATP-dependent DNA helicase ruvB
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 348

 Score =  348 bits (892), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 204/329 (62%), Positives = 252/329 (76%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
             +    + EDA  + LRP+TL++FTGQ  +  NL +FI AA+ R EA+DHVL  GPPGL
Sbjct: 7   REVDPARNAEDAAEAGLRPQTLDDFTGQKASRENLAIFIAAARQRGEAMDHVLLHGPPGL 66

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLAQ+VARELGV FR+TSGPVI +AGDLAA+LTNL+ RDVLFIDEIHRL   +EE+L
Sbjct: 67  GKTTLAQIVARELGVGFRATSGPVIQRAGDLAAILTNLQPRDVLFIDEIHRLQPAIEEVL 126

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           YPAMEDFQLDL++GEGP+ARSV+I+LS FTL+AATTR GLL  PL+DRFGIP+RL FY  
Sbjct: 127 YPAMEDFQLDLIIGEGPAARSVRIDLSPFTLVAATTRAGLLATPLRDRFGIPLRLVFYTP 186

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           ++L+ IV RGA+     +T E A EIA RSRGTPRIAGRLLRRVRDFA V     + R +
Sbjct: 187 DELRQIVSRGARKLEFDLTPEGAEEIARRSRGTPRIAGRLLRRVRDFASVTRGGPVDRAM 246

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           ADAAL RL +D +G D +D RYL  IA +  GGPVG+ET++A L+E RD +ED++EPY+I
Sbjct: 247 ADAALSRLEVDSLGLDGMDRRYLRRIAEHHHGGPVGVETLAAALAEARDTLEDVVEPYLI 306

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           Q+G + RT RGR L    W+HLG+  P R
Sbjct: 307 QEGLVLRTSRGRTLGERGWRHLGLAPPPR 335


>gi|315612425|ref|ZP_07887338.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           sanguinis ATCC 49296]
 gi|315315406|gb|EFU63445.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           sanguinis ATCC 49296]
          Length = 332

 Score =  348 bits (892), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 171/323 (52%), Positives = 224/323 (69%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +  E+     LRP+ L E+ GQ +    L++FIEAAK R EALDHVL  GPPGLGKTT+A
Sbjct: 10  MGDEELVERTLRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMA 69

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            V+A ELGVN + TSGPVI KAGDL A+L +LE  DVLFIDEIHRL + VEE+LY AMED
Sbjct: 70  FVIANELGVNLKQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMED 129

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F +D+M+G G  +RSV ++L  FTLI ATTR G+L+NPL+ RFGI   + +Y   DL  I
Sbjct: 130 FYIDIMIGAGEGSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYARADLTEI 189

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           V+R A +  + +T EAA E+A+RSRGTPRIA RLL+RVRDFA++     I   I D AL 
Sbjct: 190 VERTADIFEMEITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGNGVIDDVITDKALT 249

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L +D  G D +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GFI 
Sbjct: 250 MLDVDHEGLDYVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIM 309

Query: 312 RTPRGRLLMPIAWQHLGIDIPHR 334
           RT  GR+    A++HLG +   +
Sbjct: 310 RTRSGRVATAKAYEHLGYEYNEK 332


>gi|317154313|ref|YP_004122361.1| Holliday junction DNA helicase RuvB [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316944564|gb|ADU63615.1| Holliday junction DNA helicase RuvB [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 327

 Score =  348 bits (892), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 176/317 (55%), Positives = 231/317 (72%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
               +RPR L +F GQ E  +NL VFI AA  R   LDH LF G PGLGKTTLA+++A E
Sbjct: 7   PEESVRPRRLGDFIGQDELRANLDVFIRAATERDRPLDHTLFYGNPGLGKTTLARIMASE 66

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           LGVN  +TSGPV+ ++GDLAA+LTNL+  D+LFIDEIHR+   VEE+LYPAMEDFQ+DL+
Sbjct: 67  LGVNMVTTSGPVMERSGDLAAILTNLDRGDILFIDEIHRMPATVEEVLYPAMEDFQIDLI 126

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
           +G GP AR+VK++L  FTL+ ATTR+GLLT+PL+DRFG   R+ FY  E+L  IV+R A 
Sbjct: 127 IGSGPGARTVKLDLEPFTLVGATTRLGLLTSPLRDRFGCIFRIEFYSPEELGRIVERAAT 186

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257
           + G+ V    A  I  R+RGTPRIA RLLRRVRD+A V    T+TREIA+++L RL +D+
Sbjct: 187 IIGVHVDSGGALAIGRRARGTPRIANRLLRRVRDYALVHGDGTVTREIAESSLERLEVDQ 246

Query: 258 MGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317
            G D +D + L+++  NF GGPVG++TI+A  +E    IED+ EPY+IQ GF++RTPRGR
Sbjct: 247 HGLDTMDRKILSLMVENFNGGPVGLKTIAAACAEEVRTIEDIYEPYLIQCGFLKRTPRGR 306

Query: 318 LLMPIAWQHLGIDIPHR 334
           +    A+QHL + +  R
Sbjct: 307 VATAKAYQHLKMRMDDR 323


>gi|259501310|ref|ZP_05744212.1| crossover junction endoribonuclease subunit B [Lactobacillus iners
           DSM 13335]
 gi|259167280|gb|EEW51775.1| crossover junction endoribonuclease subunit B [Lactobacillus iners
           DSM 13335]
          Length = 321

 Score =  348 bits (892), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 165/320 (51%), Positives = 223/320 (69%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E A    LRP  L ++ GQ +  S + ++I+AAK R E+LDHVL  GPPGLGKTT+A V+
Sbjct: 2   EQATELSLRPSNLSQYIGQEKVKSEMAIYIKAAKQRDESLDHVLLYGPPGLGKTTMAFVI 61

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A ELGV  +STSGP I KAGDL ALL+ L+  DVLFIDEIHRL+  VEEILY AMEDF +
Sbjct: 62  ANELGVTLKSTSGPAIDKAGDLVALLSELKPGDVLFIDEIHRLAKTVEEILYSAMEDFYV 121

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D+MVGEG +A +V + LS FTLI ATTR G L+ PL+DRFGI   + +Y  ++L+ I++R
Sbjct: 122 DIMVGEGSAAHAVHVPLSPFTLIGATTRAGQLSAPLRDRFGIVEHMQYYSEDELQQIIER 181

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            +++    +  EAA E+A RSRGTPR+A RLL+R+RDFAEV    +I+      AL +L 
Sbjct: 182 SSRVLETGINIEAAHELARRSRGTPRVANRLLKRIRDFAEVNGETSISLLTTKHALAKLE 241

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D  G DQ+D + L ++   + GGPVGI+T++A + E  + I ++ EPY++Q+GFI RTP
Sbjct: 242 VDDEGLDQIDRKILKIMINCYHGGPVGIKTLAANIGEDVETISEVYEPYLLQKGFISRTP 301

Query: 315 RGRLLMPIAWQHLGIDIPHR 334
           RGR+    A+  LGI +  R
Sbjct: 302 RGRVANAKAYVQLGISLDTR 321


>gi|296117791|ref|ZP_06836374.1| holliday junction DNA helicase RuvB [Corynebacterium ammoniagenes
           DSM 20306]
 gi|295969022|gb|EFG82264.1| holliday junction DNA helicase RuvB [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 359

 Score =  348 bits (892), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 154/331 (46%), Positives = 219/331 (66%), Gaps = 1/331 (0%)

Query: 4   REGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           R   +   V   + D+   LRP+ L+EF GQ +    L + +  AK R    DHVL  GP
Sbjct: 23  RNENVEAEVQNGEHDVERSLRPKGLDEFIGQPKVKEQLSLVLTGAKNRGVTPDHVLLSGP 82

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTT+A ++A+E+G + R TSGP + +AGDLAA+L+NL + D+LFIDEIHR++   E
Sbjct: 83  PGLGKTTMAMIIAQEMGTSLRMTSGPALERAGDLAAMLSNLMEGDILFIDEIHRIARPAE 142

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LY AMEDF++D++VG+GP A S+ + +  FTL+ ATTR G+LT PL+DRFG   ++ +
Sbjct: 143 EMLYMAMEDFRIDVIVGKGPGATSIPLEIPPFTLVGATTRAGMLTGPLRDRFGFTAQMEY 202

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  +DL+ +V R A++ G+ + ++AA EI  RSRGTPRIA RLLRRVRDFAEV     + 
Sbjct: 203 YNNDDLEHVVTRAARILGVEIDNDAAVEIGSRSRGTPRIANRLLRRVRDFAEVNGDGHVD 262

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
              A  AL    +D MG D+LD   LT + +  GGGPVG+ T++  + E    +E++ EP
Sbjct: 263 MAAARGALEVFDVDHMGLDRLDRAVLTALIKGHGGGPVGVNTLAIAVGEEPSTVEEVCEP 322

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           Y+++ G I R+ RGR+    AW+HLG+  P 
Sbjct: 323 YLVRAGMIARSARGRVATRSAWEHLGMTPPD 353


>gi|225853859|ref|YP_002735371.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae JJA]
 gi|254767444|sp|C1CC50|RUVB_STRZJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|225723832|gb|ACO19685.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae JJA]
          Length = 332

 Score =  348 bits (892), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 169/323 (52%), Positives = 220/323 (68%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +  E+     LRP+ L E+ GQ +    L++FIEAAK R EALDHVL  GPPGLGKTT+A
Sbjct: 10  MGDEELVERTLRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMA 69

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            V+A ELGVN + TSGPVI KAGDL A+L  LE  DVLFIDEIHRL + VEE+LY AMED
Sbjct: 70  FVIANELGVNLKQTSGPVIEKAGDLVAILNELEPGDVLFIDEIHRLPMSVEEVLYSAMED 129

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F +D+M+G G  +RSV + L  FTLI ATTR G+L+NPL+ RFGI   + +Y    L  I
Sbjct: 130 FYIDIMIGAGEGSRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYAHAGLTEI 189

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           V+R A +  + +T EAA E+A+RSRGTPRIA RLL+RVRDFA++     I   I D AL 
Sbjct: 190 VERTADIFEMEITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGNGVIDDIITDKALT 249

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L +D  G D +D + L  +   + GGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GFI 
Sbjct: 250 MLDVDHEGLDYVDQKILRTMIEMYSGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIM 309

Query: 312 RTPRGRLLMPIAWQHLGIDIPHR 334
           RT  GR+    A++HLG +   +
Sbjct: 310 RTRSGRVATAKAYEHLGYEYSEK 332


>gi|306828820|ref|ZP_07462012.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           mitis ATCC 6249]
 gi|304428998|gb|EFM32086.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           mitis ATCC 6249]
          Length = 332

 Score =  348 bits (892), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 172/323 (53%), Positives = 224/323 (69%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +  E+     LRP+ L E+ GQ +    L++FIEAAK R EALDHVL  GPPGLGKTT+A
Sbjct: 10  MGDEELVERTLRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMA 69

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            V+A ELGVN + TSGPVI KAGDL A+L +LE  DVLFIDEIHRL + VEE+LY AMED
Sbjct: 70  FVIANELGVNLKQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMED 129

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F +D+M+G G  +RSV ++L  FTLI ATTR G+L+NPL+ RFGI   + +Y   DL  I
Sbjct: 130 FYIDIMIGAGEGSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYAHADLTEI 189

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           V+R A +  + +T EAA E+A+RSRGTPRIA RLL+RVRDFA++     I   I D AL 
Sbjct: 190 VERTADIFEMEITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGDGLIDDVITDKALT 249

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L +D  G D +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GFI 
Sbjct: 250 MLDVDHEGLDYVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIM 309

Query: 312 RTPRGRLLMPIAWQHLGIDIPHR 334
           RT  GR+    A++HLG D   +
Sbjct: 310 RTRSGRVATAKAYEHLGYDYSEK 332


>gi|226366282|ref|YP_002784065.1| Holliday junction DNA helicase RuvB [Rhodococcus opacus B4]
 gi|254767436|sp|C1B4D1|RUVB_RHOOB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|226244772|dbj|BAH55120.1| Holliday junction DNA helicase RuvB [Rhodococcus opacus B4]
          Length = 365

 Score =  348 bits (892), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 163/331 (49%), Positives = 226/331 (68%), Gaps = 1/331 (0%)

Query: 3   DREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           D E  +S ++   D DI   LRP+ L +F GQ      L++ +  AK R    DH+L  G
Sbjct: 10  DGESPVSADLVAGDGDIEASLRPKNLHDFIGQPRVREQLQLVLTGAKMRGGTPDHILLSG 69

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKT++A ++A ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++   
Sbjct: 70  PPGLGKTSMAMIIAAELGSSLRLTSGPALERAGDLAAMLSNLVEGDVLFIDEIHRIARPA 129

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMEDF++D++VG+GP A S+ + ++ FTL+ ATTR G LT PL+DRFG    ++
Sbjct: 130 EEMLYLAMEDFRVDVVVGKGPGATSIPLEVAPFTLVGATTRSGALTGPLRDRFGFTAHMD 189

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FYE  +LK I+ R A + G+ + +EA  EIA RSRGTPRIA RLLRRVRD+AEV     +
Sbjct: 190 FYEPAELKQILMRSAGILGVQLGEEAGAEIASRSRGTPRIANRLLRRVRDYAEVRADGVV 249

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           TREIA AAL    +D++G D+LD   L+ + R+FGGGPVG+ T++  + E    +E++ E
Sbjct: 250 TREIAHAALAVYDVDQLGLDRLDRSVLSALVRSFGGGPVGVSTLAVAVGEEPATVEEVCE 309

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           P++++ G I RTPRGR+    AW  LG+  P
Sbjct: 310 PFLVRAGMIARTPRGRVATAAAWTQLGLTPP 340


>gi|19704552|ref|NP_604114.1| Holliday junction DNA helicase RuvB [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|296328431|ref|ZP_06870957.1| crossover junction ATP-dependent DNA helicase RuvB [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
 gi|22001977|sp|Q8RE97|RUVB_FUSNN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|19714838|gb|AAL95413.1| Holliday junction DNA helicase ruvB [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|296154505|gb|EFG95297.1| crossover junction ATP-dependent DNA helicase RuvB [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
          Length = 332

 Score =  348 bits (892), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 161/324 (49%), Positives = 227/324 (70%), Gaps = 1/324 (0%)

Query: 5   EGLLSR-NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E ++S   +  E      LRP++ +E+ GQ      + + I+AA+ R   +DH+L  GPP
Sbjct: 2   ERIISELEMPNEIEIQKSLRPKSFDEYIGQENLKEKMSISIKAAQKRNMVVDHILLYGPP 61

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA V+A E+  N + TSGP++ KAGDLAA+LT+LE+ D+LFIDEIHRL+  VEE
Sbjct: 62  GLGKTTLAGVIANEMKANLKITSGPILEKAGDLAAILTSLEENDILFIDEIHRLNSTVEE 121

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILYPAMED +LD+++G+GPSA+S++I L  FTLI ATTR GLL+ PL+DRFG+  ++ +Y
Sbjct: 122 ILYPAMEDGELDIIIGKGPSAKSIRIELPPFTLIGATTRAGLLSAPLRDRFGVSHKMEYY 181

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
              ++K+I+ RGAK+ G+ + ++ A EI+ RSRGTPRIA RLL+RVRD+ E+    TI +
Sbjct: 182 NENEIKSIIIRGAKILGVKINEDGAIEISKRSRGTPRIANRLLKRVRDYCEIKGNGTIDK 241

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
             A  AL  L +D  G D LD   +  I  N+ GGPVGIET+S  L E R  +E++ EPY
Sbjct: 242 LSAKNALDMLGVDSNGLDDLDRNIINSIIENYDGGPVGIETLSLLLGEDRRTLEEVYEPY 301

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHL 327
           +++ GF++RT RGR++   A+QH 
Sbjct: 302 LVKIGFLKRTNRGRVVTSKAYQHF 325


>gi|119504259|ref|ZP_01626339.1| Isoleucyl-tRNA synthetase, class Ia [marine gamma proteobacterium
           HTCC2080]
 gi|119459767|gb|EAW40862.1| Isoleucyl-tRNA synthetase, class Ia [marine gamma proteobacterium
           HTCC2080]
          Length = 351

 Score =  348 bits (892), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 184/334 (55%), Positives = 244/334 (73%), Gaps = 2/334 (0%)

Query: 2   MDREGLLSRN--VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           ++ + L++       ++     +RP+ LE++ GQ      +++F+ AAK R E LDH L 
Sbjct: 3   IETDRLIAPEQGARGDEQVDRAIRPKCLEDYLGQRVVREQMEIFLAAAKQRDEPLDHTLI 62

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A E+GV  ++TSGPV+ KAGD+AAL+TNLE  DVLFIDEIHRLS 
Sbjct: 63  FGPPGLGKTTLASIIAHEMGVALKTTSGPVLEKAGDIAALMTNLEPGDVLFIDEIHRLSP 122

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEEILYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ ATTR GLLT+PL+DRFGI  R
Sbjct: 123 YVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGLLTSPLRDRFGIVQR 182

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FYE++DL  IV R AKL  + V D  A E+A R+RGTPRIA RLLRRVRD+AEV    
Sbjct: 183 LEFYEVDDLTKIVARSAKLLEIPVDDAGAREMARRARGTPRIANRLLRRVRDYAEVKSDG 242

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT  +A  AL  L +D++G D LD R L M+   F GGPVG+++++A LSE R  +ED+
Sbjct: 243 RITERVAQQALDMLNVDQLGLDHLDRRLLLMLIEKFEGGPVGVDSLAAALSEERGTLEDV 302

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +EPY+IQQG++ RTPRGR++   A++H GI +P 
Sbjct: 303 LEPYLIQQGYLLRTPRGRIVTQAAYRHFGIQMPR 336


>gi|300934558|ref|ZP_07149814.1| Holliday junction DNA helicase RuvB [Corynebacterium resistens DSM
           45100]
          Length = 362

 Score =  347 bits (891), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 162/327 (49%), Positives = 226/327 (69%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L +  V  +    S LRP++L EF GQ +  + L + +  A+ R    DHVL  GPPGLG
Sbjct: 31  LSAGQVPGDSDVESSLRPKSLSEFIGQPKVRTQLDLVLGGARTRGVVPDHVLLAGPPGLG 90

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTT+A ++A+ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++   EE+LY
Sbjct: 91  KTTMAMIIAQELGSSLRMTSGPALERAGDLAAMLSNLMEGDVLFIDEIHRIARPAEEMLY 150

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            AMEDF++D++VG+GP A S+ I ++ FTL+ ATTR G+LT PL+DRFG   ++ FY++E
Sbjct: 151 MAMEDFRIDVIVGKGPGATSIPIEVAPFTLVGATTRAGMLTGPLRDRFGFTAQMEFYDVE 210

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           DL  +V R A + G+ V  +AA EIA RSRGTPRIA RLLRRVRDFA+V     +T E+A
Sbjct: 211 DLTRVVTRAAGILGVHVDSDAASEIASRSRGTPRIANRLLRRVRDFADVNADGRVTLEVA 270

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
            AALL   +D+ G D+LD   L  + R  GGGPVG+ T++  + E    +E++ EPY+++
Sbjct: 271 KAALLVFDVDESGLDRLDRAVLDALVRGHGGGPVGVNTLAIAVGEEPSTVEEVCEPYLVR 330

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            G + RTPRGR+    AW+H+G++ P 
Sbjct: 331 AGMLARTPRGRVATAAAWRHVGLEPPE 357


>gi|70726281|ref|YP_253195.1| Holliday junction DNA helicase RuvB [Staphylococcus haemolyticus
           JCSC1435]
 gi|97190346|sp|Q4L6Y6|RUVB_STAHJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|68447005|dbj|BAE04589.1| holliday junction DNA helicase [Staphylococcus haemolyticus
           JCSC1435]
          Length = 331

 Score =  347 bits (891), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 164/327 (50%), Positives = 226/327 (69%), Gaps = 2/327 (0%)

Query: 2   MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD + ++ + +  E+    L LRP  L+++ GQ    +NL+VFI+AAK R E LDHVL  
Sbjct: 1   MD-DRMVDQALHSEETSFELSLRPTMLKQYIGQSSIKNNLEVFIKAAKLREEPLDHVLLF 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTL+ ++A E+ VN R+ SGP + + GDLAA+L+ L+  DVLFIDEIHRLS  
Sbjct: 60  GPPGLGKTTLSNIIANEMNVNIRTVSGPSLDRPGDLAAILSGLQPGDVLFIDEIHRLSST 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LY AMEDF +D+++G+G  ARS++I+L  FTL+ ATTR G LT PL+DRFG+ +RL
Sbjct: 120 VEEVLYSAMEDFFIDIIIGKGDEARSIRIDLPPFTLVGATTRAGSLTGPLRDRFGVHLRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y   DLK I+ R A++    + DE+A E+A RSRGTPR+A RLL+RVRDF +V   + 
Sbjct: 180 EYYNENDLKEIIIRTAEVLNTKIDDESATELAKRSRGTPRVANRLLKRVRDFQQVNEDEQ 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I  E    AL  L +D  G D +D + +  I   + GGPVG++TI+  + E R  IED+ 
Sbjct: 240 IYIETTKQALQLLQVDAEGLDYIDHKMMRCIINQYDGGPVGLDTIAVSIGEERITIEDVY 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHL 327
           EP++IQ+GFI+RTPRGR     A++H 
Sbjct: 300 EPFLIQKGFIERTPRGRKATAFAYEHF 326


>gi|325001438|ref|ZP_08122550.1| Holliday junction DNA helicase RuvB [Pseudonocardia sp. P1]
          Length = 360

 Score =  347 bits (891), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 161/332 (48%), Positives = 227/332 (68%), Gaps = 1/332 (0%)

Query: 2   MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
            DR   +       +AD+   LRPR+L+EF GQ      L++ +E A+ R +  DH+L  
Sbjct: 16  FDRIREIDAVAQPGEADVEASLRPRSLDEFVGQPRVREQLELVLEGARRRGDPPDHILLS 75

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKT+LA +VA+ELG + R TSGP + +AGDLAA+L+NL   DVLFIDEIHR +  
Sbjct: 76  GPPGLGKTSLAMIVAQELGASIRLTSGPALERAGDLAAMLSNLVPGDVLFIDEIHRTARP 135

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            EE+LY AMEDF++D++VG+GP A S+ ++++ FTL+ ATTR G LT PL+DRFG    +
Sbjct: 136 AEEMLYLAMEDFRVDVVVGKGPGATSIPLDVAPFTLVGATTRAGSLTGPLRDRFGFTGHM 195

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FYE+ +L+ ++ R A + G+ +  + A EIA R RGTPR+A RLLRRVRDFAEV     
Sbjct: 196 EFYEVLELEHVLHRAAGILGIDLRADGAEEIAGRCRGTPRVANRLLRRVRDFAEVRADGV 255

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I RE+A AAL    +D++G D+LD   L+ + R+F GGPVG+ T++  + E    +E++ 
Sbjct: 256 IHREVARAALAVYDVDELGLDRLDRAVLSALVRSFHGGPVGVSTLAVAVGEDAGTVEEVC 315

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EPY+++ G + RTPRGR+  P+AW HLG+  P
Sbjct: 316 EPYLVRAGMLARTPRGRVATPLAWTHLGLTPP 347


>gi|307708099|ref|ZP_07644567.1| holliday junction DNA helicase RuvB [Streptococcus mitis NCTC
           12261]
 gi|307615884|gb|EFN95089.1| holliday junction DNA helicase RuvB [Streptococcus mitis NCTC
           12261]
          Length = 332

 Score =  347 bits (891), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 171/323 (52%), Positives = 223/323 (69%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +  E+     LRP+ L E+ GQ +    L++FIEAAK R EALDHVL  GPPGLGKTT+A
Sbjct: 10  MGDEELVERTLRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMA 69

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            V+A ELGVN + TSGPVI KAGDL A+L +LE  DVLFIDEIHRL + VEE+LY AMED
Sbjct: 70  FVIANELGVNLKQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMED 129

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F +D+M+G G  +RSV + L  FTLI ATTR G+L+NPL+ RFGI   + +Y   DL  I
Sbjct: 130 FYIDIMIGAGEGSRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYAHADLTEI 189

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           V+R A +  + +T EAA E+A+RSRGTPRIA RLL+RVRDFA++     I   I D AL 
Sbjct: 190 VERTADIFEMEITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGNGVIDDLITDKALT 249

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L +D  G D +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GFI 
Sbjct: 250 MLDVDHEGLDYVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIM 309

Query: 312 RTPRGRLLMPIAWQHLGIDIPHR 334
           RT  GR+    A++HLG +   +
Sbjct: 310 RTRSGRVATAKAYEHLGYEYSEK 332


>gi|19552870|ref|NP_600872.1| Holliday junction DNA helicase RuvB [Corynebacterium glutamicum
           ATCC 13032]
 gi|145295780|ref|YP_001138601.1| Holliday junction DNA helicase RuvB [Corynebacterium glutamicum R]
 gi|172044439|sp|A4QEN3|RUVB_CORGB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|140845700|dbj|BAF54699.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 363

 Score =  347 bits (891), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 160/327 (48%), Positives = 226/327 (69%), Gaps = 1/327 (0%)

Query: 8   LSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           +  N+  ++ D  + LRP++L EF GQ +    L + +  AK R    DHVL  GPPGLG
Sbjct: 31  VDANLKPDEYDAEVTLRPKSLTEFIGQPKVRDQLSLVLTGAKNRGVVPDHVLLSGPPGLG 90

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTT+A ++A+ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++   EE+LY
Sbjct: 91  KTTMAMIIAQELGTSLRMTSGPALERAGDLAAMLSNLMEGDVLFIDEIHRIARPAEEMLY 150

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            AMEDF++D++VG+GP A S+ + +  FTL+ ATTR G+LT PL+DRFG   ++ FY++ 
Sbjct: 151 MAMEDFRIDVIVGKGPGATSIPLEIPPFTLVGATTRSGMLTGPLRDRFGFTAQMEFYDVP 210

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           DL  +V+R AK+  + + ++AA EIA RSRGTPRIA RLLRRVRDFAEV     IT   A
Sbjct: 211 DLTKVVKRTAKILDVGIDNDAAVEIASRSRGTPRIANRLLRRVRDFAEVHADGHITMGAA 270

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           +AAL+   +D++G D+LD   L  + R  GGGPVG+ T++  + E    +E++ EPY+++
Sbjct: 271 NAALIVFDVDEVGLDRLDRAVLDALIRGHGGGPVGVNTLAVAVGEEPGTVEEVCEPYLVR 330

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            G I RT RGR+    AW+HLG++ P 
Sbjct: 331 AGMIARTGRGRVATAAAWRHLGLEPPE 357


>gi|307709955|ref|ZP_07646402.1| holliday junction DNA helicase RuvB [Streptococcus mitis SK564]
 gi|307619326|gb|EFN98455.1| holliday junction DNA helicase RuvB [Streptococcus mitis SK564]
          Length = 323

 Score =  347 bits (891), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 172/323 (53%), Positives = 223/323 (69%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +  E+     LRP+ L E+ GQ +    L++FIEAAK R EALDHVL  GPPGLGKTT+A
Sbjct: 1   MGDEELVERTLRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMA 60

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            V+A ELGVN + TSGPVI KAGDL A+L +LE  DVLFIDEIHRL + VEE+LY AMED
Sbjct: 61  FVIANELGVNLKQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMED 120

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F +D+M+G G  +RSV + L  FTLI ATTR G+L+NPL+ RFGI   + +Y   DL  I
Sbjct: 121 FYIDIMIGAGEGSRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYAHADLTEI 180

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           V+R A +  + +T EAA E+A+RSRGTPRIA RLL+RVRDFA++    TI   I D AL 
Sbjct: 181 VERTADIFEMEITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGNGTIDDLITDKALT 240

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L +D  G D +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GFI 
Sbjct: 241 MLDVDHEGLDYVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIM 300

Query: 312 RTPRGRLLMPIAWQHLGIDIPHR 334
           RT  GR+    A+ HLG +   +
Sbjct: 301 RTRSGRVATAKAYDHLGYEYNEK 323


>gi|148994600|ref|ZP_01823742.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           SP9-BS68]
 gi|168489735|ref|ZP_02713934.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           SP195]
 gi|147927130|gb|EDK78168.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           SP9-BS68]
 gi|183571836|gb|EDT92364.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           SP195]
          Length = 332

 Score =  347 bits (891), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 170/323 (52%), Positives = 221/323 (68%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +  E+     LRP+ L E+ GQ +    L++FIEAAK R EALDHVL  GPPGLGKTT+A
Sbjct: 10  MGDEELVERTLRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMA 69

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            V+A ELGVN + TSGPVI KAGDL A+L  LE  DVLFIDEIHRL + VEE+LY AMED
Sbjct: 70  FVIANELGVNLKQTSGPVIEKAGDLVAILNELEPGDVLFIDEIHRLPMSVEEVLYSAMED 129

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F +D+M+G G  +RSV + L  FTLI ATTR G+L+NPL+ RFGI   + +Y   DL  I
Sbjct: 130 FYIDIMIGAGEGSRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYAHADLTEI 189

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           V+R A +  + +T EAA E+A+RSRGTPRIA RLL+RVRDFA++     I   I D AL 
Sbjct: 190 VERTADIFEMEITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGNGVIDDIITDKALT 249

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L +D  G D +D + L  +   + GGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GFI 
Sbjct: 250 MLDVDHEGLDYVDQKILRTMIEMYSGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIM 309

Query: 312 RTPRGRLLMPIAWQHLGIDIPHR 334
           RT  GR+    A++HLG +   +
Sbjct: 310 RTRSGRVATAKAYEHLGYEYSEK 332


>gi|15902282|ref|NP_357832.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae R6]
 gi|116515806|ref|YP_815759.1| Holliday junction DNA helicase B [Streptococcus pneumoniae D39]
 gi|148987999|ref|ZP_01819462.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           SP6-BS73]
 gi|149001627|ref|ZP_01826600.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           SP14-BS69]
 gi|149006013|ref|ZP_01829742.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           SP18-BS74]
 gi|149017952|ref|ZP_01834411.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           SP23-BS72]
 gi|168484641|ref|ZP_02709593.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           CDC1873-00]
 gi|168492214|ref|ZP_02716357.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           CDC0288-04]
 gi|169834021|ref|YP_001693787.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           Hungary19A-6]
 gi|225856017|ref|YP_002737528.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           P1031]
 gi|225858109|ref|YP_002739619.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           70585]
 gi|225860297|ref|YP_002741806.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|237649671|ref|ZP_04523923.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae CCRI
           1974]
 gi|237821371|ref|ZP_04597216.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae CCRI
           1974M2]
 gi|298229421|ref|ZP_06963102.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae str.
           Canada MDR_19F]
 gi|298256040|ref|ZP_06979626.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae str.
           Canada MDR_19A]
 gi|298502076|ref|YP_003724016.1| Holliday junction DNA helicase B [Streptococcus pneumoniae
           TCH8431/19A]
 gi|32171626|sp|Q8CWU7|RUVB_STRR6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|122279355|sp|Q04MI9|RUVB_STRP2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|238688308|sp|B1I8Y6|RUVB_STRPI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|254767442|sp|C1CB34|RUVB_STRP7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|254767445|sp|C1CIE0|RUVB_STRZP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|254767446|sp|C1CPD4|RUVB_STRZT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|15457786|gb|AAK99042.1| Branch migration of Holliday structures [Streptococcus pneumoniae
           R6]
 gi|116076382|gb|ABJ54102.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae D39]
 gi|147760085|gb|EDK67074.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           SP14-BS69]
 gi|147762369|gb|EDK69330.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           SP18-BS74]
 gi|147926463|gb|EDK77536.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           SP6-BS73]
 gi|147931516|gb|EDK82494.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           SP23-BS72]
 gi|168996523|gb|ACA37135.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           Hungary19A-6]
 gi|172042151|gb|EDT50197.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           CDC1873-00]
 gi|183573573|gb|EDT94101.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           CDC0288-04]
 gi|225721600|gb|ACO17454.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           70585]
 gi|225726046|gb|ACO21898.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           P1031]
 gi|225726645|gb|ACO22496.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298237671|gb|ADI68802.1| Holliday junction DNA helicase B [Streptococcus pneumoniae
           TCH8431/19A]
          Length = 332

 Score =  347 bits (890), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 170/323 (52%), Positives = 221/323 (68%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +  E+     LRP+ L E+ GQ +    L++FIEAAK R EALDHVL  GPPGLGKTT+A
Sbjct: 10  MGDEELVERTLRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMA 69

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            V+A ELGVN + TSGPVI KAGDL A+L  LE  DVLFIDEIHRL + VEE+LY AMED
Sbjct: 70  FVIANELGVNLKQTSGPVIEKAGDLVAILNELEPGDVLFIDEIHRLPMSVEEVLYSAMED 129

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F +D+M+G G  +RSV + L  FTLI ATTR G+L+NPL+ RFGI   + +Y   DL  I
Sbjct: 130 FYIDIMIGAGEGSRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYAHADLTEI 189

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           V+R A +  + +T EAA E+A+RSRGTPRIA RLL+RVRDFA++     I   I D AL 
Sbjct: 190 VERTADIFEMEITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGNGVIDDIITDKALT 249

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L +D  G D +D + L  +   + GGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GFI 
Sbjct: 250 MLDVDHEGLDYVDQKILRTMIEMYSGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIM 309

Query: 312 RTPRGRLLMPIAWQHLGIDIPHR 334
           RT  GR+    A++HLG +   +
Sbjct: 310 RTRSGRVATAKAYEHLGYEYSEK 332


>gi|327398424|ref|YP_004339293.1| Holliday junction ATP-dependent DNA helicase ruvB [Hippea maritima
           DSM 10411]
 gi|327181053|gb|AEA33234.1| Holliday junction ATP-dependent DNA helicase ruvB [Hippea maritima
           DSM 10411]
          Length = 322

 Score =  347 bits (890), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 167/310 (53%), Positives = 229/310 (73%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           ++  +   LRP+ L E+ GQ     NL + IEAAK R EAL+H LF GPPGLGKTTLA +
Sbjct: 2   EDKLNSQNLRPQNLNEYIGQKNIVKNLSLAIEAAKKRNEALEHCLFYGPPGLGKTTLANI 61

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           VA+++  N  +TSGP + K GD+AA+LTNL ++D+LFIDEIHRL+  VEE LY A+EDF+
Sbjct: 62  VAKQMNANIITTSGPAVEKVGDIAAILTNLNEKDILFIDEIHRLNRAVEETLYSALEDFK 121

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           LD++VG+GP AR+++I+L  FTLI ATTR+GLLT+PL+DRFGI +RL+FY  +DL  IV+
Sbjct: 122 LDIIVGQGPGARTIRIDLPHFTLIGATTRIGLLTSPLRDRFGIILRLDFYSAKDLTEIVK 181

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A + GL + ++AA  IA RSRGTPRIA +LLRRVRD +++    +I  E A  AL  L
Sbjct: 182 RSASILGLDIEEDAANLIAERSRGTPRIANKLLRRVRDLSQIESKDSIDVETAKKALSML 241

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            ID+ G D LD +Y+  +   F GGPVGIET+SA + E +  +ED++EPY++Q G+++RT
Sbjct: 242 EIDENGLDYLDKKYILTLIEKFNGGPVGIETLSASIGEDKSTLEDVVEPYLLQIGYLKRT 301

Query: 314 PRGRLLMPIA 323
           P+GR+  P+A
Sbjct: 302 PKGRVATPLA 311


>gi|148996682|ref|ZP_01824400.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           SP11-BS70]
 gi|168576313|ref|ZP_02722196.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           MLV-016]
 gi|194397680|ref|YP_002036959.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae G54]
 gi|307066936|ref|YP_003875902.1| Holliday junction resolvasome helicase subunit [Streptococcus
           pneumoniae AP200]
 gi|226698785|sp|B5E6T3|RUVB_STRP4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|147757257|gb|EDK64296.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           SP11-BS70]
 gi|183577783|gb|EDT98311.1| holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           MLV-016]
 gi|194357347|gb|ACF55795.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae G54]
 gi|306408473|gb|ADM83900.1| Holliday junction resolvasome, helicase subunit [Streptococcus
           pneumoniae AP200]
          Length = 332

 Score =  347 bits (890), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 171/328 (52%), Positives = 223/328 (67%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L +  +  E+     LRP+ L E+ GQ +    L++FIEAAK R EALDHVL  GPPGLG
Sbjct: 5   LDNEMMGDEELVERTLRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLG 64

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTT+A V+A ELGVN + TSGPVI KAGDL A+L  LE  DVLFIDEIHRL + VEE+LY
Sbjct: 65  KTTMAFVIANELGVNLKQTSGPVIEKAGDLVAILNELEPGDVLFIDEIHRLPMSVEEVLY 124

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            AMEDF +D+M+G G  +RSV + L  FTLI ATTR G+L+NPL+ RFGI   + +Y   
Sbjct: 125 SAMEDFYIDIMIGAGEGSRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYAHA 184

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           DL  IV+R A +  + +T EAA E+A+RSRGTPRIA RLL+RVRDFA++     I   I 
Sbjct: 185 DLTEIVERTADIFEMEITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGNGVIDDIIT 244

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           D AL  L +D  G D +D + L  +   + GGPVG+ T+S  ++E R+ +ED+ EPY+IQ
Sbjct: 245 DKALTMLDVDHEGLDYVDQKILRTMIEMYSGGPVGLGTLSVNIAEERETVEDMYEPYLIQ 304

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           +GFI RT  GR+    A++HLG +   +
Sbjct: 305 KGFIMRTRSGRVATAKAYEHLGYEYSEK 332


>gi|306825930|ref|ZP_07459268.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           sp. oral taxon 071 str. 73H25AP]
 gi|304431862|gb|EFM34840.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           sp. oral taxon 071 str. 73H25AP]
          Length = 332

 Score =  347 bits (890), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 171/323 (52%), Positives = 224/323 (69%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +  E+     LRP+ L E+ GQ +    L++FIEAAK R EALDHVL  GPPGLGKTT+A
Sbjct: 10  MGDEELVERTLRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMA 69

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            V+A ELGVN + TSGPVI KAGDL A+L +LE  DVLFIDEIHRL + VEE+LY AMED
Sbjct: 70  FVIANELGVNLKQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMED 129

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F +D+M+G G  +RSV ++L  FTLI ATTR G+L+NPL+ RFGI   + +Y   DL  I
Sbjct: 130 FYIDIMIGAGEGSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYAHADLTEI 189

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           V+R A +  + +T EAA E+A+RSRGTPRIA RLL+RVRDFA++     I   I D AL 
Sbjct: 190 VERTADIFEMKITHEAAAELALRSRGTPRIANRLLKRVRDFAQIMGNGLIDDVITDKALT 249

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L +D  G D +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GFI 
Sbjct: 250 MLDVDHEGLDYVDQKILHTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIM 309

Query: 312 RTPRGRLLMPIAWQHLGIDIPHR 334
           RT  GR+    A++HLG +   +
Sbjct: 310 RTRSGRVATAKAYEHLGYEYSEK 332


>gi|15900193|ref|NP_344797.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           TIGR4]
 gi|111658327|ref|ZP_01409016.1| hypothetical protein SpneT_02000517 [Streptococcus pneumoniae
           TIGR4]
 gi|20140174|sp|Q97SR6|RUVB_STRPN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|14971729|gb|AAK74437.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           TIGR4]
          Length = 332

 Score =  347 bits (890), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 170/323 (52%), Positives = 222/323 (68%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +  E+     LRP+ L E+ GQ +    L++FIEAAK R EALDHVL  GPPGLGKTT+A
Sbjct: 10  MGDEELVERTLRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMA 69

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            V+A ELGVN + TSGPVI KAGDL A+L +LE  DVLFIDEIHRL + VEE+LY AMED
Sbjct: 70  FVIANELGVNLKQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMED 129

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F +D+M+G G  +RSV + L  FTLI ATTR G+L+NPL+ RFGI   + +Y   DL  I
Sbjct: 130 FYIDIMIGAGEGSRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYAHADLTEI 189

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           V+R A +  + +T EAA E+A+RSRGTPRIA RLL+RVRDFA++     I   I D AL 
Sbjct: 190 VERTADIFEMEITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGNGVIDDVITDKALT 249

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L +D  G D +D + L  +   + GGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GFI 
Sbjct: 250 MLDVDHEGLDYVDQKILRTMIEMYSGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIM 309

Query: 312 RTPRGRLLMPIAWQHLGIDIPHR 334
           RT  GR+    A++HLG +   +
Sbjct: 310 RTRSGRVATAKAYEHLGYEYSEK 332


>gi|290579578|ref|YP_003483970.1| Holliday junction DNA helicase [Streptococcus mutans NN2025]
 gi|254996477|dbj|BAH87078.1| Holliday junction DNA helicase [Streptococcus mutans NN2025]
          Length = 331

 Score =  347 bits (890), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 168/323 (52%), Positives = 224/323 (69%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L +  +  E+     LRP+ L+E+ GQ +    LK+FI+AAK R EALDHVL  GPPGLG
Sbjct: 5   LDNEPMGDEEFAERTLRPQYLQEYIGQDKVKDQLKIFIKAAKQRDEALDHVLLFGPPGLG 64

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTT+A V+A ELGVN + TSGP I KAGDL A+L +LE  DVLFIDEIHRL + VEE+LY
Sbjct: 65  KTTMAFVIANELGVNLKQTSGPAIEKAGDLVAVLNDLEPGDVLFIDEIHRLPMAVEEVLY 124

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            AMEDF +D+M+G G ++RSV ++L  FTLI ATTR G+L+NPL+ RFGI   + +Y   
Sbjct: 125 SAMEDFYIDIMIGAGETSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYTDI 184

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           DL  IV+R A +  + +T +AA E+A RSRGTPRIA RLL+RVRD+A++     I  +I 
Sbjct: 185 DLTEIVERTADIFEMTITHQAALELARRSRGTPRIANRLLKRVRDYAQIMGDGLIDDKIT 244

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           D AL  L +D  G D +D + L  +   + GGPVG+ T+S  ++E R+ +ED+ EPY+IQ
Sbjct: 245 DKALTMLDVDHEGLDYVDQKILKTMIEMYHGGPVGLGTLSVNIAEERETVEDMYEPYLIQ 304

Query: 307 QGFIQRTPRGRLLMPIAWQHLGI 329
           +GFI RT  GR+    A++HLG 
Sbjct: 305 KGFIIRTRSGRVATAKAYEHLGY 327


>gi|293364311|ref|ZP_06611037.1| crossover junction endoribonuclease subunit B [Streptococcus oralis
           ATCC 35037]
 gi|307702723|ref|ZP_07639675.1| holliday junction DNA helicase RuvB [Streptococcus oralis ATCC
           35037]
 gi|291317157|gb|EFE57584.1| crossover junction endoribonuclease subunit B [Streptococcus oralis
           ATCC 35037]
 gi|307623839|gb|EFO02824.1| holliday junction DNA helicase RuvB [Streptococcus oralis ATCC
           35037]
          Length = 332

 Score =  347 bits (890), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 171/323 (52%), Positives = 225/323 (69%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +  E+     LRP+ L E+ GQ +    L++FIEAAK R EALDHVL  GPPGLGKTT+A
Sbjct: 10  MGDEELVERTLRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMA 69

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            V+A ELGVN + TSGPVI KAGDL A+L +LE  DVLFIDEIHRL + VEE+LY AMED
Sbjct: 70  FVIANELGVNLKQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMED 129

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F +D+M+G G  +RSV ++L  FTLI ATTR G+L+NPL+ RFGI   + +Y   DL  I
Sbjct: 130 FYIDIMIGAGEGSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYAHADLTEI 189

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           V+R A +  + +T EAA E+A+RSRGTPRIA RLL+RVRDFA++     I   I D AL 
Sbjct: 190 VERTADIFEMEITHEAAAELALRSRGTPRIANRLLKRVRDFAQIMGDGLIDDVITDKALT 249

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L +D+ G D +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GFI 
Sbjct: 250 MLDVDREGLDYVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIM 309

Query: 312 RTPRGRLLMPIAWQHLGIDIPHR 334
           RT  GR+    A++HLG +   +
Sbjct: 310 RTRSGRVATAKAYEHLGYEYSEK 332


>gi|255536338|ref|YP_003096709.1| Holliday junction DNA helicase RuvB [Flavobacteriaceae bacterium
           3519-10]
 gi|255342534|gb|ACU08647.1| Holliday junction DNA helicase RuvB [Flavobacteriaceae bacterium
           3519-10]
          Length = 346

 Score =  347 bits (890), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 168/322 (52%), Positives = 224/322 (69%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
             E      +RP++ ++F GQ +   NL+VF+ AAK R  ALDHVL  GPPGLGKTTLA 
Sbjct: 20  DDELLQEEKIRPQSFQDFAGQRKTLDNLEVFVAAAKNRGGALDHVLLHGPPGLGKTTLAH 79

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++A ELGV  + TSGPV+ K G LA LLTNLE+ DVLFIDEIHRLS IVEE LY AMED+
Sbjct: 80  IIANELGVGCKITSGPVLDKPGSLAGLLTNLEENDVLFIDEIHRLSPIVEEYLYSAMEDY 139

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           ++D+M+  GP+ARSV+I L+ FTL+ ATTR G+LT P+  RFGI  RL +Y IE L  I+
Sbjct: 140 KIDIMLESGPNARSVQIGLNPFTLVGATTRSGMLTKPMLARFGIQSRLEYYTIELLGMII 199

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           +R A++ G+ + ++AA EIA RSRGTPRIA  LLRRVRDFAE+     I   I   AL  
Sbjct: 200 ERSARVLGVKIYEDAALEIARRSRGTPRIANALLRRVRDFAEIKGNGEIEIGITKFALNS 259

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D+ G D +D + + ++  NF G PVGI  ++  + E  + +E++ EP++IQ+GF+ R
Sbjct: 260 LNVDEFGLDDMDNKIMRVMIENFRGKPVGISALATSIGENPETLEEVYEPFLIQEGFMIR 319

Query: 313 TPRGRLLMPIAWQHLGIDIPHR 334
           TPRGR +   A++HL I +P R
Sbjct: 320 TPRGREVTEKAYKHLNISLPRR 341


>gi|22257045|sp|Q9AE09|RUVB_CORGL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|21324429|dbj|BAB99053.1| Holliday junction resolvasome helicase subunit [Corynebacterium
           glutamicum ATCC 13032]
          Length = 360

 Score =  347 bits (890), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 160/327 (48%), Positives = 226/327 (69%), Gaps = 1/327 (0%)

Query: 8   LSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           +  N+  ++ D  + LRP++L EF GQ +    L + +  AK R    DHVL  GPPGLG
Sbjct: 28  VDANLKPDEYDAEVTLRPKSLTEFIGQPKVRDQLSLVLTGAKNRGVVPDHVLLSGPPGLG 87

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTT+A ++A+ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++   EE+LY
Sbjct: 88  KTTMAMIIAQELGTSLRMTSGPALERAGDLAAMLSNLMEGDVLFIDEIHRIARPAEEMLY 147

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            AMEDF++D++VG+GP A S+ + +  FTL+ ATTR G+LT PL+DRFG   ++ FY++ 
Sbjct: 148 MAMEDFRIDVIVGKGPGATSIPLEIPPFTLVGATTRSGMLTGPLRDRFGFTAQMEFYDVP 207

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           DL  +V+R AK+  + + ++AA EIA RSRGTPRIA RLLRRVRDFAEV     IT   A
Sbjct: 208 DLTKVVKRTAKILDVGIDNDAAVEIASRSRGTPRIANRLLRRVRDFAEVHADGHITMGAA 267

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           +AAL+   +D++G D+LD   L  + R  GGGPVG+ T++  + E    +E++ EPY+++
Sbjct: 268 NAALIVFDVDEVGLDRLDRAVLDALIRGHGGGPVGVNTLAVAVGEEPGTVEEVCEPYLVR 327

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            G I RT RGR+    AW+HLG++ P 
Sbjct: 328 AGMIARTGRGRVATAAAWRHLGLEPPE 354


>gi|329117410|ref|ZP_08246127.1| Holliday junction DNA helicase RuvB [Streptococcus parauberis NCFD
           2020]
 gi|326907815|gb|EGE54729.1| Holliday junction DNA helicase RuvB [Streptococcus parauberis NCFD
           2020]
          Length = 332

 Score =  347 bits (890), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 167/330 (50%), Positives = 227/330 (68%), Gaps = 1/330 (0%)

Query: 6   GLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
            +L   +  ++A +   LRP+ L E+ GQ +    L +FIEAAK R E+LDHVL  GPPG
Sbjct: 3   RILDEELMGDEALVERTLRPQYLREYIGQDKVKDQLTIFIEAAKMRDESLDHVLLFGPPG 62

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTT+A V+A ELGVN + TSGP I KAGDL A+L +LE  DVLFIDEIHR+ ++VEE+
Sbjct: 63  LGKTTMAFVIANELGVNLKQTSGPAIEKAGDLVAVLNDLEPGDVLFIDEIHRMPMVVEEV 122

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LY AMEDF +D+M+G G ++RSV ++L  FTLI ATTR G+L+NPL+ RFGI   + +Y+
Sbjct: 123 LYSAMEDFYIDIMIGAGDTSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYQ 182

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           ++DL  IV+R A +  + +  EAA E+A RSRGTPRIA RLL+RVRD+A++     IT  
Sbjct: 183 VDDLTEIVERTADIFEMEIVHEAAHELARRSRGTPRIANRLLKRVRDYAQIMGDGVITDT 242

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           I D AL  L +D  G D +D + L  +   + GGPVG+ T+S  ++E RD +ED+ EPY+
Sbjct: 243 ITDKALDMLDVDHEGLDYVDQKILRTMIEMYNGGPVGLGTLSVNIAEERDTVEDMYEPYL 302

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           IQ+GFI RT  GR+    A++HL      +
Sbjct: 303 IQKGFIMRTRTGRVATEKAYRHLNYPYLEK 332


>gi|148927931|ref|ZP_01811337.1| Holliday junction DNA helicase RuvB [candidate division TM7
           genomosp. GTL1]
 gi|147886720|gb|EDK72284.1| Holliday junction DNA helicase RuvB [candidate division TM7
           genomosp. GTL1]
          Length = 343

 Score =  347 bits (890), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 168/333 (50%), Positives = 225/333 (67%), Gaps = 4/333 (1%)

Query: 2   MDREGLLSRNV----SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M  E ++         +E+     LRPR  +E+ GQ    + L++ I AAK R E +DHV
Sbjct: 1   MGIERIVQPTTDTTSPEEEIIEVTLRPRRFDEYIGQDRLKATLRLAITAAKKRGEPIDHV 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTT+A V+A E+G N R T+GP I +AGDLA++LTNL + DVLFIDEIHRL
Sbjct: 61  LLYGPPGLGKTTMATVIANEMGANIRVTAGPAIERAGDLASILTNLAEGDVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           S  VEE+LY AMEDF+LD+++G+GP+ARSV+++L +FTLI ATTR G L  PL+DRFG+ 
Sbjct: 121 SRAVEEVLYGAMEDFKLDIVIGKGPAARSVRLDLPKFTLIGATTRTGALAAPLRDRFGLL 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            RL FY+  ++K I++R A + G  +  +AA  +A R+R TPR+A RLL+RVRD+A+V  
Sbjct: 181 HRLEFYQPHEVKQIIERAADILGATIHSKAAANLATRARLTPRVANRLLKRVRDYADVNG 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
              I    +  AL  L ID++G D  D   L  I  N+ GGPVG+ET++A   + R  IE
Sbjct: 241 DGIIDEATSHKALNLLEIDELGLDAADRSLLKAIVENYKGGPVGVETLAALTGDERSTIE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           D  EPY++Q GF++RTPRGR L P A QHLG  
Sbjct: 301 DFYEPYLLQIGFLERTPRGRKLTPRALQHLGYP 333


>gi|326329830|ref|ZP_08196150.1| holliday junction DNA helicase RuvB [Nocardioidaceae bacterium
           Broad-1]
 gi|325952416|gb|EGD44436.1| holliday junction DNA helicase RuvB [Nocardioidaceae bacterium
           Broad-1]
          Length = 360

 Score =  347 bits (890), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 161/325 (49%), Positives = 224/325 (68%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           ++     + A  + LRP++L+E  GQ      L + +EAA+ R  A DHVL  GPPGLGK
Sbjct: 19  IAEADGDDRAVEAALRPKSLDELIGQQRVREQLSLVLEAARQRERAPDHVLLSGPPGLGK 78

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127
           TTLA ++A E+    R TSGP I  AGDLAA+L+ L + +VLF+DEIHR+S   EE+LY 
Sbjct: 79  TTLAMIIAAEMSAPLRITSGPAITHAGDLAAILSGLNEGEVLFVDEIHRMSRPAEEMLYL 138

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           AMEDF++D+++G+GP A ++ I+L  FTL+ ATTR GLL  PL+DRFG    L  Y+  D
Sbjct: 139 AMEDFRVDVVIGKGPGATAIPIDLPPFTLVGATTRAGLLPGPLRDRFGFTGHLELYDPAD 198

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           L+ IV+R A L  + + D+ A EIA RSRGTPRIA RLLRRVRD+A+V    T+T+++A 
Sbjct: 199 LELIVRRSAGLLEVTLRDDGAAEIAGRSRGTPRIANRLLRRVRDYAQVKADGTVTQQVAQ 258

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
            AL    +D +G D+LDL  L  + R FGGGPVGI T++  + E R+ +E++ EP++++ 
Sbjct: 259 KALDLYEVDPLGLDRLDLAVLDALCRRFGGGPVGISTLAVAVGEERETVEEVAEPFLVRS 318

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIP 332
           GF+ RTPRGR+  P AW+HLG+ +P
Sbjct: 319 GFLARTPRGRVATPAAWEHLGLPVP 343


>gi|37522688|ref|NP_926065.1| Holliday junction DNA helicase RuvB [Gloeobacter violaceus PCC
           7421]
 gi|44888387|sp|Q7NGP9|RUVB_GLOVI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|35213690|dbj|BAC91060.1| holliday junction DNA helicase [Gloeobacter violaceus PCC 7421]
          Length = 376

 Score =  347 bits (890), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 153/327 (46%), Positives = 218/327 (66%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           +    + ED     LRP+ L ++ GQ +  + L + + AAK+R E+LDH+LF GPPGLGK
Sbjct: 33  VQSERAHEDQHEESLRPKNLVDYAGQKDLKAVLGIAVAAAKSRGESLDHLLFYGPPGLGK 92

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127
           T+++ ++ARE+ V    T+ P + +  D+A LL  L   D+LFIDEIHRL  + EEILYP
Sbjct: 93  TSISLILAREMNVQIHLTTAPALERPRDIAGLLVKLRRGDILFIDEIHRLPRLTEEILYP 152

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           AMED++LD+ +G+G +AR   + L RFTLI ATTRVG L++PL+DRFG+  RL FY++E+
Sbjct: 153 AMEDYRLDITIGKGQNARITSVPLPRFTLIGATTRVGALSSPLRDRFGLIQRLRFYDVEE 212

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           L  I+ R A L  +++ +  A EIA R+RGTPRIA RLL+RVRD+A+V     IT  +A 
Sbjct: 213 LAGIIVRNAALLNISIDEPGAAEIARRARGTPRIANRLLKRVRDYAQVEGDGRITEPVAC 272

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           AAL    +D  G D  D R L  +  ++ GGPVG+E+++A   E    IE++ EPY++Q 
Sbjct: 273 AALELFEVDPRGLDWTDRRLLATLIEHYNGGPVGVESLAAATGEDTQTIEEVYEPYLMQI 332

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           G++ RT RGR+  P A++HLG   P R
Sbjct: 333 GYLLRTARGRMASPAAYRHLGYAPPQR 359


>gi|307711004|ref|ZP_07647426.1| holliday junction DNA helicase RuvB [Streptococcus mitis SK321]
 gi|307616966|gb|EFN96144.1| holliday junction DNA helicase RuvB [Streptococcus mitis SK321]
          Length = 323

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 170/323 (52%), Positives = 222/323 (68%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +  E+     LRP+ L E+ GQ +    L++FIEAAK R EALDHVL  GPPGLGKTT+A
Sbjct: 1   MGDEELVERTLRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMA 60

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            V+A ELGVN + TSGPVI KAGDL A+L +LE  DVLFIDEIHRL + VEE+LY AMED
Sbjct: 61  FVIANELGVNLKQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMED 120

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F +D+M+G G  +RSV + L  FTLI ATTR G+L+NPL+ RFGI   + +Y   DL  I
Sbjct: 121 FYIDIMIGAGEGSRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYAHADLTEI 180

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           V+R A +  + +T EAA E+A+RSRGTPRIA RLL+RVRDFA++     I   I D AL 
Sbjct: 181 VERTADIFEMEITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGDGVIDDVITDKALT 240

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L +D  G D +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GFI 
Sbjct: 241 MLDVDHEGLDYVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIM 300

Query: 312 RTPRGRLLMPIAWQHLGIDIPHR 334
           RT  GR+     ++HLG +   +
Sbjct: 301 RTRSGRVATAKTYEHLGYEYNEK 323


>gi|254294745|ref|YP_003060768.1| Holliday junction DNA helicase RuvB [Hirschia baltica ATCC 49814]
 gi|254043276|gb|ACT60071.1| Holliday junction DNA helicase RuvB [Hirschia baltica ATCC 49814]
          Length = 345

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 198/333 (59%), Positives = 245/333 (73%), Gaps = 2/333 (0%)

Query: 2   MDREG-LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M R+G +        +     LRP + ++FTGQ  A +NLKVF++AA+ R +ALDHVL  
Sbjct: 3   MGRDGDITDPTRQPGETIDRALRPLSFDDFTGQASAKANLKVFVQAARNRGDALDHVLLF 62

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ+V+RE+GV FRSTSGPVI KAGDLAALLTNLE+ DVLFIDEIHRLS +
Sbjct: 63  GPPGLGKTTLAQIVSREMGVGFRSTSGPVIGKAGDLAALLTNLEENDVLFIDEIHRLSPV 122

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILYPAMED  LD+M+G+GPSARSVKI+L  FTL+ ATTR GLL+ PL+DRFGIP+RL
Sbjct: 123 VEEILYPAMEDHTLDIMIGDGPSARSVKIDLPPFTLVGATTRAGLLSTPLRDRFGIPVRL 182

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  E+L  IV +     G  +T+  A EIA R+RGTPRIA RLLRRVRDFAE  + + 
Sbjct: 183 EFYTPEELGGIVFKAGIKMGAEITESGAIEIARRARGTPRIAIRLLRRVRDFAEADNVQI 242

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
             +  A   L RL +D  G D LD RYL  + + + GGPVG +T++A LSE RDAIE++I
Sbjct: 243 -DKASASKGLARLEVDSDGLDALDRRYLNALVKTYSGGPVGADTLAAALSEARDAIEEVI 301

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY++QQG + RTPRGR+  P A+Q LG+  P 
Sbjct: 302 EPYLMQQGLVARTPRGRVAAPGAYQRLGMPTPD 334


>gi|55821907|ref|YP_140349.1| Holliday junction DNA helicase RuvB [Streptococcus thermophilus LMG
           18311]
 gi|55823823|ref|YP_142264.1| Holliday junction DNA helicase RuvB [Streptococcus thermophilus
           CNRZ1066]
 gi|81820217|sp|Q5LXQ9|RUVB_STRT1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|81820382|sp|Q5M2B1|RUVB_STRT2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|172045696|sp|Q03IE9|RUVB_STRTD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|55737892|gb|AAV61534.1| Holliday junction DNA helicase, subunit B [Streptococcus
           thermophilus LMG 18311]
 gi|55739808|gb|AAV63449.1| Holliday junction DNA helicase, subunit B [Streptococcus
           thermophilus CNRZ1066]
          Length = 333

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 164/320 (51%), Positives = 226/320 (70%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +  E+     LRP+  +E+ GQ +    LK+FIEAAK R EALDH L  GPPGLGKTT+A
Sbjct: 10  LGDEEYVERTLRPQYFKEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMA 69

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            V+A E+GVN + TSGP I KAGDL A+L +LE  D+LFIDEIHR+ + VEE+LY AMED
Sbjct: 70  FVIANEMGVNLKQTSGPAIEKAGDLVAILNDLEPGDILFIDEIHRMPMAVEEVLYSAMED 129

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + +D+M+G G ++RSV ++L  FTL+ ATTR G+L+NPL+ RFGI   + +YE+ DL  I
Sbjct: 130 YYIDIMIGAGETSRSVHLDLPPFTLVGATTRAGMLSNPLRARFGINGHMEYYELPDLTEI 189

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           V+R +++  + +T EAA E+A RSRGTPRIA RLL+RVRD+A++     I  +IAD AL 
Sbjct: 190 VERTSEIFEMTITPEAALELARRSRGTPRIANRLLKRVRDYAQIMGDGVIDDKIADQALT 249

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L +D  G D +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GFI 
Sbjct: 250 MLDVDHEGLDYVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIM 309

Query: 312 RTPRGRLLMPIAWQHLGIDI 331
           RT  GR+    A++H+G D 
Sbjct: 310 RTRTGRVATAKAYEHMGYDY 329


>gi|307704114|ref|ZP_07641042.1| holliday junction DNA helicase RuvB [Streptococcus mitis SK597]
 gi|307622336|gb|EFO01345.1| holliday junction DNA helicase RuvB [Streptococcus mitis SK597]
          Length = 323

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 171/323 (52%), Positives = 223/323 (69%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +  E+     LRP+ L E+ GQ +    L++FIEAAK R EALDHVL  GPPGLGKTT+A
Sbjct: 1   MGDEELVERTLRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMA 60

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            V+A ELGVN + TSGPVI KAGDL A+L +LE  DVLFIDEIHRL + VEE+LY AMED
Sbjct: 61  FVIANELGVNLKQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMED 120

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F +D+M+G G  +RSV + L  FTLI ATTR G+L+NPL+ RFGI   + +Y   DL  I
Sbjct: 121 FYIDIMIGAGEGSRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYAHADLTEI 180

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           V+R A +  + +T EAA E+A+RSRGTPRIA RLL+RVRDFA++     I   I D AL 
Sbjct: 181 VERTADIFEMEITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGNGVIDDLITDKALT 240

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L +D  G D +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GFI 
Sbjct: 241 MLDVDHEGLDYVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIM 300

Query: 312 RTPRGRLLMPIAWQHLGIDIPHR 334
           RT  GR+    A++HLG +   +
Sbjct: 301 RTRSGRVATAKAYEHLGYEYIEK 323


>gi|189183541|ref|YP_001937326.1| Holliday junction DNA helicase RuvB [Orientia tsutsugamushi str.
           Ikeda]
 gi|238692239|sp|B3CRA8|RUVB_ORITI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|189180312|dbj|BAG40092.1| holliday junction DNA helicase RuvB [Orientia tsutsugamushi str.
           Ikeda]
          Length = 325

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 192/324 (59%), Positives = 246/324 (75%), Gaps = 1/324 (0%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           +  LL   V+ E+   ++LRP  L +FTGQ +  SNLK+FI ++  R E+LDH L  GPP
Sbjct: 2   KNQLLDAKVASEE-QETVLRPSLLNDFTGQNQMKSNLKIFITSSIERDESLDHTLLHGPP 60

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTT+AQ++A+E  VN +ST+GP+++KA DLAA+LTNL+  DVLFIDEIHRL+I VEE
Sbjct: 61  GLGKTTIAQIIAKEKNVNLKSTAGPILSKAADLAAILTNLQKNDVLFIDEIHRLNIHVEE 120

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILY AMEDF LD+M+GEGPSARSVKI L +FTLI ATTR+GL++ PL DRFGI ++LNFY
Sbjct: 121 ILYSAMEDFSLDIMIGEGPSARSVKIYLPKFTLIGATTRLGLISKPLCDRFGIHLKLNFY 180

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
             E+L  IV+RGAK+  +A+   AA EIA RSRGTPRIA RLL+RVRDF    +   + +
Sbjct: 181 SCEELTKIVERGAKVLNVALDTNAAIEIANRSRGTPRIALRLLKRVRDFGIYQNINPLNQ 240

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           +I D AL +L IDK+G D  D +YL  IA N+ GGPVGI+TI+A LSE RD IE++IEPY
Sbjct: 241 QITDYALNQLGIDKLGLDSSDHKYLRFIAENYDGGPVGIDTIAAALSEQRDTIEEMIEPY 300

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHL 327
           +IQ GF+QRT RGR++   A +HL
Sbjct: 301 LIQIGFVQRTQRGRVITANALKHL 324


>gi|312862354|ref|ZP_07722597.1| Holliday junction DNA helicase RuvB [Streptococcus vestibularis
           F0396]
 gi|311101997|gb|EFQ60197.1| Holliday junction DNA helicase RuvB [Streptococcus vestibularis
           F0396]
          Length = 333

 Score =  347 bits (889), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 164/322 (50%), Positives = 226/322 (70%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +  E+     LRP+  +E+ GQ +    LK+FIEAAK R EALDH L  GPPGLGKTT+A
Sbjct: 10  LGDEEYVERTLRPQYFKEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMA 69

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            V+A E+GVN + TSGP I KAGDL A+L +LE  D+LFIDEIHR+ + VEE+LY AMED
Sbjct: 70  FVIANEMGVNLKQTSGPAIEKAGDLVAILNDLEPGDILFIDEIHRMPMAVEEVLYSAMED 129

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + +D+M+G G ++RSV ++L  FTL+ ATTR G+L+NPL+ RFGI   + +YE+ DL  I
Sbjct: 130 YYIDIMIGAGETSRSVHLDLPPFTLVGATTRAGMLSNPLRARFGINGHMEYYELPDLTEI 189

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           V+R +++  + +T EAA E+A RSRGTPRIA RLL+RVRD+A++     I  +IAD AL 
Sbjct: 190 VERTSEIFEMTITPEAALELARRSRGTPRIANRLLKRVRDYAQIMGDGIIDDKIADKALT 249

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L +D  G D +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GFI 
Sbjct: 250 MLDVDHEGLDYVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIM 309

Query: 312 RTPRGRLLMPIAWQHLGIDIPH 333
           RT  GR+    A++H+G D   
Sbjct: 310 RTRTGRVATVKAYEHMGYDYTQ 331


>gi|94993433|ref|YP_601531.1| Holliday junction DNA helicase RuvB [Streptococcus pyogenes
           MGAS10750]
 gi|94546941|gb|ABF36987.1| Holliday junction DNA helicase ruvB [Streptococcus pyogenes
           MGAS10750]
          Length = 356

 Score =  347 bits (889), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 162/327 (49%), Positives = 224/327 (68%), Gaps = 1/327 (0%)

Query: 6   GLLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
            +L  NV   E+     LRP+ L E+ GQ +      +FIEAAK R E+LDHVL  GPPG
Sbjct: 27  RILDNNVMGNEEFSDRTLRPQYLHEYIGQDKVKEQFAIFIEAAKRRDESLDHVLLFGPPG 86

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTT+A V+A ELGVN + TSGP + KAGDL A+L  LE  D+LFIDEIHR+ + VEE+
Sbjct: 87  LGKTTMAFVIANELGVNLKQTSGPAVEKAGDLVAILNELEPGDILFIDEIHRMPMSVEEV 146

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LY AMEDF +D+M+G G ++RS+ ++L  FTLI ATTR G+L+NPL+ RFGI   + +Y+
Sbjct: 147 LYSAMEDFYIDIMIGAGDTSRSIHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYQ 206

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            +DL  IV+R A +  + +  EAA ++A RSRGTPRIA RLL+RVRD+A++     IT +
Sbjct: 207 EKDLTEIVERTATIFEIKIDHEAARKLACRSRGTPRIANRLLKRVRDYAQIIGDGIITAQ 266

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           I D AL  L +D+ G D +D + L  +   + GGPVG+ T+S  ++E R+ +E++ EPY+
Sbjct: 267 ITDRALTMLDVDREGLDYIDQKILRTMIEMYQGGPVGLGTLSVNIAEERNTVEEMYEPYL 326

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           IQ+GF+ RT  GR+    A++HLG   
Sbjct: 327 IQKGFLMRTRTGRVATQKAYRHLGYPY 353


>gi|227495488|ref|ZP_03925804.1| crossover junction endoribonuclease subunit B [Actinomyces
           coleocanis DSM 15436]
 gi|226831035|gb|EEH63418.1| crossover junction endoribonuclease subunit B [Actinomyces
           coleocanis DSM 15436]
          Length = 337

 Score =  347 bits (889), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 161/333 (48%), Positives = 222/333 (66%), Gaps = 1/333 (0%)

Query: 2   MDREGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD   +++ + S+ E A  + LRPR L +F GQ + C  L++ + AA+ R  + DHVL  
Sbjct: 1   MDNNSIVNASASESERAVEAALRPRKLTDFIGQPKVCEQLELVLTAAQNRGVSPDHVLLA 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTL+ ++A ELG + R TSGP I  AGDLAA+L++L++ DVLFIDEIHRL+  
Sbjct: 61  GPPGLGKTTLSMIIAAELGASLRLTSGPAIQHAGDLAAILSSLQEGDVLFIDEIHRLART 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            EE+LY AMEDF++D++VG+GP A S+ + L  FT++ ATTR GLL  PL+DRFG    L
Sbjct: 121 AEEMLYLAMEDFRVDVIVGKGPGATSIPLTLPPFTVVGATTRSGLLPAPLRDRFGFTAHL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y+  +L+ +V+R A+L    +  EAA EIA RSRGTPRIA RLLRRV DFA+V     
Sbjct: 181 EYYDAAELQKVVERSARLLETEIDVEAAAEIAGRSRGTPRIANRLLRRVVDFAQVHGNGV 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           + R  A AAL    +D  G D+LD   L  +   F GGPVG+ T++  + E  + +E + 
Sbjct: 241 VDRAAAQAALTLFEVDPEGLDRLDRAVLETLCTRFNGGPVGLTTLAITVGEEPETVETVA 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY++++GF+ RT RGR     AW+HLG+  P 
Sbjct: 301 EPYLVREGFVIRTTRGRAATRKAWEHLGLIPPD 333


>gi|50913430|ref|YP_059402.1| Holliday junction DNA helicase RuvB [Streptococcus pyogenes
           MGAS10394]
 gi|50902504|gb|AAT86219.1| Holliday junction DNA helicase [Streptococcus pyogenes MGAS10394]
          Length = 356

 Score =  347 bits (889), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 162/327 (49%), Positives = 224/327 (68%), Gaps = 1/327 (0%)

Query: 6   GLLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
            +L  NV   E+     LRP+ L E+ GQ +      +FIEAAK R E+LDHVL  GPPG
Sbjct: 27  RILDNNVMGNEEFSDRTLRPQYLHEYIGQDKVKEQFAIFIEAAKRRDESLDHVLLFGPPG 86

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTT+A V+A ELGVN + TSGP + KAGDL A+L  LE  D+LFIDEIHR+ + VEE+
Sbjct: 87  LGKTTMAFVIANELGVNLKQTSGPAVEKAGDLVAILNELEPGDILFIDEIHRMPMSVEEV 146

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LY AMEDF +D+M+G G ++RS+ ++L  FTLI ATTR G+L+NPL+ RFGI   + +Y+
Sbjct: 147 LYSAMEDFYIDIMIGAGDTSRSIHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYQ 206

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            +DL  IV+R A +  + +  EAA ++A RSRGTPRIA RLL+RVRD+A++     IT +
Sbjct: 207 EKDLTEIVERTATIFEIKIDHEAARKLACRSRGTPRIANRLLKRVRDYAQIIGDGIITAQ 266

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           I D AL  L +D+ G D +D + L  +   + GGPVG+ T+S  ++E R+ +E++ EPY+
Sbjct: 267 ITDRALTMLDVDREGLDYIDQKILRTMIEMYQGGPVGLGTLSVNIAEERNTVEEMYEPYL 326

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           IQ+GF+ RT  GR+    A++HLG   
Sbjct: 327 IQKGFLMRTRTGRVATQKAYRHLGYPY 353


>gi|260583654|ref|ZP_05851402.1| holliday junction DNA helicase RuvB [Granulicatella elegans ATCC
           700633]
 gi|260158280|gb|EEW93348.1| holliday junction DNA helicase RuvB [Granulicatella elegans ATCC
           700633]
          Length = 332

 Score =  347 bits (889), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 163/329 (49%), Positives = 223/329 (67%), Gaps = 2/329 (0%)

Query: 2   MDREGLL--SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M+    +  S    QE +    LRP+ L+++ GQ +    L ++I+AA++R EALDHVL 
Sbjct: 1   MEEHRFVDGSPLDEQEVSTELSLRPQNLQQYIGQQKVKEELSIYIQAARSRQEALDHVLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA V+A EL V  ++TSGP I + GDL ALL +L   DVLFIDEIHRL  
Sbjct: 61  YGPPGLGKTTLAMVIANELEVGIKTTSGPAIERPGDLVALLNDLNAGDVLFIDEIHRLPR 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LY AMEDF +D++VG+GP+A  V   L  FTL+ ATTR G L+ PL+DRFGI   
Sbjct: 121 VVEEMLYSAMEDFFVDIVVGQGPTAHPVHFPLPPFTLVGATTRAGALSAPLRDRFGIVSH 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           + +Y+ + L  IV+R A +    + +EAA E+A+RSRGTPRIA RLL+RVRDF++V    
Sbjct: 181 MEYYDEQSLTEIVKRTASVFESEIHEEAAREVALRSRGTPRIANRLLKRVRDFSQVYEEG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I++EI   AL  L +D+ G D +D + L  +   + GGPVG+  I+A +SE  + IED+
Sbjct: 241 GISKEITQKALKVLQVDEKGLDAIDRKLLNAMIDLYDGGPVGLGAIAANISEDAETIEDM 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
            EPY++Q GFI+RT RGR++ P A+ HL 
Sbjct: 301 YEPYLLQIGFIKRTSRGRMVTPEAYVHLN 329


>gi|332364921|gb|EGJ42689.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           sanguinis SK355]
          Length = 332

 Score =  347 bits (889), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 168/320 (52%), Positives = 229/320 (71%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +  E+     LRP+ L+E+ GQ +  + LK+FIEAAK R EALDH L  GPPGLGKTT+A
Sbjct: 10  MGDEELVERTLRPQYLQEYIGQDKVKNQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMA 69

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            V+A ELGVN + TSGPVI K+GDL A+L +LE  DVLFIDEIHRL + VEE+LY AMED
Sbjct: 70  FVIANELGVNLKQTSGPVIEKSGDLVAILNDLEPGDVLFIDEIHRLPMAVEEVLYSAMED 129

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F +D+M+G G ++RSV ++L  FTLI ATTR G+L+NPL+ RFGI   + +YE  DL  I
Sbjct: 130 FYIDIMIGSGETSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYEAGDLTEI 189

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           V+R A++  + +T EAA ++A+RSRGTPRIA RLL+RVRD+A++     I  +I D AL 
Sbjct: 190 VERTAEIFEMDITHEAAKDLALRSRGTPRIANRLLKRVRDYAQIVGNGLIDDKITDQALS 249

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L +D+ G D +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GF+ 
Sbjct: 250 MLDVDQEGLDYVDQKILKTMIEVYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFVM 309

Query: 312 RTPRGRLLMPIAWQHLGIDI 331
           RT  GR+    A++HLG + 
Sbjct: 310 RTRTGRVATRKAYEHLGYEY 329


>gi|94984512|ref|YP_603876.1| Holliday junction DNA helicase B [Deinococcus geothermalis DSM
           11300]
 gi|123079970|sp|Q1J1C7|RUVB_DEIGD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|94554793|gb|ABF44707.1| Holliday junction DNA helicase RuvB [Deinococcus geothermalis DSM
           11300]
          Length = 331

 Score =  347 bits (889), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 174/317 (54%), Positives = 228/317 (71%), Gaps = 1/317 (0%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +   + LRP++L E+ GQ      L V+++AAK R EALDH L  GPPGLGKTTLA ++A
Sbjct: 3   EPLDAALRPKSLAEYVGQARLKEKLGVYLQAAKGRKEALDHTLLFGPPGLGKTTLAHIIA 62

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTN-LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
            ELGVN R TSGP I K GDLAA+LTN LE+ DVLFIDEIHRL  + EE LYPAMEDF+L
Sbjct: 63  AELGVNIRVTSGPAIEKPGDLAAILTNSLEEGDVLFIDEIHRLGRVAEEHLYPAMEDFKL 122

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D+++G+GP+AR++++ L RFTL+ ATTR GL+T P++ RFGI   L +Y  E++ T + R
Sbjct: 123 DIVLGQGPAARTIELPLPRFTLVGATTRPGLITAPMRSRFGIIEHLEYYTPEEIGTNLLR 182

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A+L G  +T+EAA EI  RSRGT RIA RLLRRVRD+A+VA  KTI  E A  AL +L 
Sbjct: 183 DARLLGFGLTEEAAIEIGARSRGTMRIAKRLLRRVRDYADVAGEKTIELERAQDALDKLG 242

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D  G D+ D +YL  +   F GGPVG++T++  +SE    +ED+ EPY+IQ GFI+RTP
Sbjct: 243 LDTAGLDERDKKYLETLIHRFAGGPVGVDTLATAISEDALTLEDVYEPYLIQLGFIKRTP 302

Query: 315 RGRLLMPIAWQHLGIDI 331
           RGR+    A+ HLG+ +
Sbjct: 303 RGRVATAHAYDHLGLPV 319


>gi|325689150|gb|EGD31157.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           sanguinis SK115]
          Length = 332

 Score =  347 bits (889), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 170/320 (53%), Positives = 228/320 (71%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +  E+     LRP+ L+E+ GQ +    LK+FIEAAK R EALDH L  GPPGLGKTT+A
Sbjct: 10  MGDEELVERTLRPQYLQEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMA 69

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            V+A ELGVN + TSGPVI K+GDL A+L +LE  DVLFIDEIHRL + VEE+LY AMED
Sbjct: 70  FVIANELGVNLKQTSGPVIEKSGDLVAILNDLEPGDVLFIDEIHRLPMAVEEVLYSAMED 129

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F +D+M+G G ++RSV ++L  FTLI ATTR G+L+NPL+ RFGI   + +YE  DL  I
Sbjct: 130 FYIDIMIGSGETSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYEAGDLTEI 189

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           V+R A++  + +T EAA E+AMRSRGTPRIA RLL+RVRD+A++     I  +I D AL 
Sbjct: 190 VERTAEIFEMDITHEAAKELAMRSRGTPRIANRLLKRVRDYAQIMSNGLIDDKITDQALS 249

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L +D+ G D +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GF+ 
Sbjct: 250 MLDVDQEGLDYVDQKILKTMIEVYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFVM 309

Query: 312 RTPRGRLLMPIAWQHLGIDI 331
           RT  GR+    A++HLG + 
Sbjct: 310 RTRTGRVATRKAYEHLGYEY 329


>gi|257055538|ref|YP_003133370.1| Holliday junction DNA helicase subunit RuvB [Saccharomonospora
           viridis DSM 43017]
 gi|256585410|gb|ACU96543.1| Holliday junction DNA helicase subunit RuvB [Saccharomonospora
           viridis DSM 43017]
          Length = 374

 Score =  347 bits (889), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 159/330 (48%), Positives = 222/330 (67%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           D   L +   + E    + LRPRTL+ F GQ      L++ +E+A+ R    DHVL  GP
Sbjct: 30  DEAPLSAVAHTGEREVETTLRPRTLDSFVGQPRVREQLQLVLESARKRGVPPDHVLLSGP 89

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKT+LA ++A EL  + R TSGP + KAGDLAA+L+NL + DVLFIDEIHR++   E
Sbjct: 90  PGLGKTSLAMIIAAELDTSIRITSGPALEKAGDLAAMLSNLAEGDVLFIDEIHRIARPAE 149

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LY AMEDF++D++VG+GP A S+ + +  FTL+ ATTR G LT PL+DRFG   ++ F
Sbjct: 150 EMLYLAMEDFRVDVVVGKGPGATSIPLEIPPFTLVGATTRSGALTGPLRDRFGFTGQMEF 209

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  E+L+ +++R A + G+A+ DE   EIA RSRGTPRIA RLLRRVRD+AEV      T
Sbjct: 210 YTPEELEQVLKRSASILGIAIDDEGRAEIARRSRGTPRIANRLLRRVRDYAEVRADGVAT 269

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             +  AAL    +D++G D+LD   L  + R+F GGPVG+ T++  + E    +E++ EP
Sbjct: 270 LPVVRAALQVYDVDELGLDRLDRAVLDALVRSFNGGPVGVSTLAVAVGEEPTTVEEVCEP 329

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           Y+++ G + RTPRGR+   +AW+HLG+  P
Sbjct: 330 YLVRAGMLARTPRGRVATALAWEHLGLQPP 359


>gi|67924049|ref|ZP_00517499.1| Holliday junction DNA helicase RuvB [Crocosphaera watsonii WH 8501]
 gi|67854116|gb|EAM49425.1| Holliday junction DNA helicase RuvB [Crocosphaera watsonii WH 8501]
          Length = 354

 Score =  347 bits (889), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 156/332 (46%), Positives = 224/332 (67%), Gaps = 1/332 (0%)

Query: 4   REGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           +E L +   +Q +D     +RP + +E+ GQ +    L + IEAAK R E +DH+L  GP
Sbjct: 16  QERLTNTKKNQVQDNLEESIRPHSFDEYIGQKDLKDVLSIVIEAAKTRNEPIDHLLLYGP 75

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTT++ ++A ++ VN + T+ P + +  D+  LL NL+  D+LFIDEIHRL+ + E
Sbjct: 76  PGLGKTTISLILASQMEVNCKITAAPALERPRDITGLLVNLKPGDILFIDEIHRLNRLTE 135

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMED++LD+ +G+G +AR+  I L +FTL+ ATT+VG LT+PL+DRFG+  RL F
Sbjct: 136 ELLYPAMEDYRLDITIGKGQAARTRSIPLPKFTLVGATTKVGALTSPLRDRFGLIQRLKF 195

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           YE E+L  I+QR AKL   ++T+  + EI  RSRGTPRIA RLLRRVRD+ +V   ++IT
Sbjct: 196 YEPEELALIIQRTAKLLNTSITEPGSLEIGRRSRGTPRIANRLLRRVRDYIQVKKFESIT 255

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           +E+A  AL    +D  G D  D   L  + + F GGPVG+E I+A   E    IE++ EP
Sbjct: 256 QELAAEALDIYQVDPQGLDWTDRLILETMIKQFNGGPVGLEAIAAATGEDAKTIEEVYEP 315

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           Y++Q G++ RTPRGR++  IA+QHLG     +
Sbjct: 316 YLLQIGYLNRTPRGRVVTAIAYQHLGKTTEEQ 347


>gi|313889567|ref|ZP_07823212.1| Holliday junction DNA helicase RuvB [Streptococcus pseudoporcinus
           SPIN 20026]
 gi|313122076|gb|EFR45170.1| Holliday junction DNA helicase RuvB [Streptococcus pseudoporcinus
           SPIN 20026]
          Length = 332

 Score =  347 bits (889), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 166/330 (50%), Positives = 227/330 (68%), Gaps = 1/330 (0%)

Query: 6   GLLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
            +L  +V   E+     LRP+ L E+ GQ +    L +FIEAAK R E+LDHVL  GPPG
Sbjct: 3   RILDNDVMGNEELVERTLRPQFLREYIGQDKVKDQLNIFIEAAKMRDESLDHVLLFGPPG 62

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTT+A V+A ELGVN + TSGP I K+GDL A+L +LE  DVLFIDEIHR+ + VEE+
Sbjct: 63  LGKTTMAFVIANELGVNLKQTSGPAIEKSGDLVAILNDLEPGDVLFIDEIHRIPMAVEEV 122

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LY AMEDF +D+M+G G ++RSV + L  FTLI ATTR G+L+NPL+ RFGI   + +Y+
Sbjct: 123 LYSAMEDFYIDIMIGAGDTSRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYQ 182

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           ++DL  I++R + +  + +  EAA E+A RSRGTPRIA RLL+RVRD+A++     IT++
Sbjct: 183 VDDLTEIIERTSDIFEMEIVQEAAHELARRSRGTPRIANRLLKRVRDYAQIMGNGVITKD 242

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           I D AL  L +D+ G D +D + L  +   + GGPVG+ T+S  ++E RD +ED+ EPY+
Sbjct: 243 ITDKALEMLDVDQEGLDYVDQKILRTMIEIYNGGPVGLGTLSVNIAEERDTVEDMYEPYL 302

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           IQ+GFI RT  GR+    A+QHL      +
Sbjct: 303 IQKGFIVRTRTGRVATQKAYQHLHYPYTEK 332


>gi|322515865|ref|ZP_08068807.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           vestibularis ATCC 49124]
 gi|322125652|gb|EFX96979.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           vestibularis ATCC 49124]
          Length = 333

 Score =  347 bits (889), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 164/322 (50%), Positives = 226/322 (70%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +  E+     LRP+  +E+ GQ +    LK+FIEAAK R EALDH L  GPPGLGKTT+A
Sbjct: 10  LGDEEYVERTLRPQYFKEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMA 69

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            V+A E+GVN + TSGP I KAGDL A+L +LE  D+LFIDEIHR+ + VEE+LY AMED
Sbjct: 70  FVIANEMGVNLKQTSGPAIEKAGDLVAILNDLEPGDILFIDEIHRMPMAVEEVLYSAMED 129

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + +D+M+G G ++RSV ++L  FTL+ ATTR G+L+NPL+ RFGI   + +YE+ DL  I
Sbjct: 130 YYIDIMIGAGETSRSVHLDLPPFTLVGATTRAGMLSNPLRARFGINGHMEYYELPDLTEI 189

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           V+R +++  + +T EAA E+A RSRGTPRIA RLL+RVRD+A++     I  +IAD AL 
Sbjct: 190 VERTSEIFEMTITPEAALELARRSRGTPRIANRLLKRVRDYAQIMGDGIIDDKIADKALT 249

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L +D  G D +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GFI 
Sbjct: 250 MLDVDHEGLDYVDQKILRTMIEIYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIM 309

Query: 312 RTPRGRLLMPIAWQHLGIDIPH 333
           RT  GR+    A++H+G D   
Sbjct: 310 RTRTGRVATVKAYEHMGYDYTQ 331


>gi|228478116|ref|ZP_04062727.1| holliday junction DNA helicase RuvB [Streptococcus salivarius
           SK126]
 gi|228250296|gb|EEK09549.1| holliday junction DNA helicase RuvB [Streptococcus salivarius
           SK126]
          Length = 334

 Score =  346 bits (888), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 164/322 (50%), Positives = 226/322 (70%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +  E+     LRP+  +E+ GQ +    LK+FIEAAK R EALDH L  GPPGLGKTT+A
Sbjct: 10  LGDEEYVERTLRPQYFKEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMA 69

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            V+A E+GVN + TSGP I KAGDL A+L +LE  D+LFIDEIHR+ + VEE+LY AMED
Sbjct: 70  FVIANEMGVNLKQTSGPAIEKAGDLVAILNDLEPGDILFIDEIHRMPMAVEEVLYSAMED 129

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + +D+M+G G ++RSV + L  FTL+ ATTR G+L+NPL+ RFGI   + +YE+ DLK I
Sbjct: 130 YYIDIMIGAGETSRSVHLELPPFTLVGATTRAGMLSNPLRARFGINGHMEYYELPDLKEI 189

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           ++R +++  + +T EAA E+A RSRGTPRIA RLL+RVRD+A++     I  +IAD AL 
Sbjct: 190 IERTSEIFEMTITPEAALELARRSRGTPRIANRLLKRVRDYAQIMGDGIIDDKIADKALT 249

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L +D  G D +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GFI 
Sbjct: 250 MLDVDHEGLDYVDQKILRTMIEVYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIM 309

Query: 312 RTPRGRLLMPIAWQHLGIDIPH 333
           RT  GR+    A++H+G D   
Sbjct: 310 RTRTGRVATAKAYEHMGYDYTQ 331


>gi|148284808|ref|YP_001248898.1| Holliday junction DNA helicase B [Orientia tsutsugamushi str.
           Boryong]
 gi|172047216|sp|A5CEJ6|RUVB_ORITB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|146740247|emb|CAM80578.1| Holliday junction DNA helicase [Orientia tsutsugamushi str.
           Boryong]
          Length = 325

 Score =  346 bits (888), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 189/324 (58%), Positives = 244/324 (75%), Gaps = 1/324 (0%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           +  LL   V+ E+   ++LRP  L +F GQ +  SNL +FI ++  R E+LDH L  GPP
Sbjct: 2   KNQLLDAKVASEE-QETVLRPSLLNDFIGQNQMKSNLTIFITSSIERDESLDHTLLHGPP 60

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKT++AQ++A+E  VN +ST+GP+++KA DLAA+LTNL+  DVLFIDEIHRL+I VEE
Sbjct: 61  GLGKTSIAQIIAKEKNVNLKSTAGPILSKAADLAAILTNLQKNDVLFIDEIHRLNIHVEE 120

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILY AMEDF LD+M+GEGPSARSVKI L +FTLI ATTR+GL++ PL DRFGI ++LNFY
Sbjct: 121 ILYSAMEDFSLDIMIGEGPSARSVKIYLPKFTLIGATTRLGLISKPLCDRFGIHLKLNFY 180

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
             E+L  IV+RGAK+  +A+   AA EIA RSRGTPRIA RLL+RVRDF    +   + +
Sbjct: 181 SCEELTQIVERGAKVLNVALDTNAAIEIANRSRGTPRIALRLLKRVRDFGIYQNINPLNQ 240

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           +I D AL +L IDK+G D  D +YL  IA N+ GGPVGI+TI+A LSE RD IE++IEPY
Sbjct: 241 QITDYALNQLGIDKLGLDSSDHKYLRFIAENYDGGPVGIDTIAAALSEQRDTIEEMIEPY 300

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHL 327
           +IQ GF+QRT RGR++   A +HL
Sbjct: 301 LIQIGFVQRTQRGRVITANALKHL 324


>gi|255325095|ref|ZP_05366201.1| holliday junction DNA helicase RuvB [Corynebacterium
           tuberculostearicum SK141]
 gi|255297660|gb|EET76971.1| holliday junction DNA helicase RuvB [Corynebacterium
           tuberculostearicum SK141]
          Length = 359

 Score =  346 bits (888), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 154/331 (46%), Positives = 217/331 (65%), Gaps = 1/331 (0%)

Query: 4   REGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           R   +      E+ DI   LRP++L+EF GQ +    L + I+ AK R    DHVL  GP
Sbjct: 23  RNSDVEATAHSEEHDIERSLRPKSLDEFIGQPKVREQLSLVIKGAKNRGVTPDHVLLSGP 82

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTT+A ++++ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++   E
Sbjct: 83  PGLGKTTMAMIISQELGTSLRMTSGPALERAGDLAAMLSNLMEGDVLFIDEIHRIARPAE 142

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LY AMEDF++D++VG+GP A S+ + +  FTL+ ATTR G+LT PL+DRFG   ++ +
Sbjct: 143 EMLYMAMEDFRIDVIVGKGPGATSIPLEIPPFTLVGATTRAGMLTGPLRDRFGFTAQMEY 202

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y+  DL  +++R A +  + +  +AA EI  RSRGTPRIA RLLRRVRD+AEV     I 
Sbjct: 203 YDTADLTQVIKRAAHILDVEIDHDAAVEIGSRSRGTPRIANRLLRRVRDYAEVNGTGLID 262

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
              A  AL    +D MG D+LD   L  + +  GGGPVG+ T++  + E    +E++ EP
Sbjct: 263 LSAAQGALEVFDVDDMGLDRLDRAVLNALIKGHGGGPVGVSTLAIAVGEEPSTVEEVCEP 322

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           Y+++ G + RT RGR+    AW+HLG+  P 
Sbjct: 323 YLVRAGMVARTGRGRVATAAAWRHLGLTPPE 353


>gi|262068258|ref|ZP_06027870.1| holliday junction DNA helicase RuvB [Fusobacterium periodonticum
           ATCC 33693]
 gi|291377996|gb|EFE85514.1| holliday junction DNA helicase RuvB [Fusobacterium periodonticum
           ATCC 33693]
          Length = 338

 Score =  346 bits (888), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 164/324 (50%), Positives = 230/324 (70%), Gaps = 1/324 (0%)

Query: 5   EGLLSR-NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           + ++S   +  E      LRP++ +E+ GQ      + + I+AA+ R   +DH+L  GPP
Sbjct: 2   DRIISELEMPNEIEIQKSLRPKSFDEYIGQENLKEKMNISIKAAQKRNMTVDHILLYGPP 61

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA V+A E+  N + TSGP++ KAGDLAA+LT+LE+ D+LFIDEIHRL+  VEE
Sbjct: 62  GLGKTTLAGVIANEMQANLKITSGPILEKAGDLAAILTSLEENDILFIDEIHRLNNTVEE 121

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILYPAMED +LD+++G+GPSA+S++I L  FTLI ATTR GLL+ PL+DRFG+  ++ +Y
Sbjct: 122 ILYPAMEDGELDIIIGKGPSAKSIRIELPAFTLIGATTRAGLLSAPLRDRFGVSHKMEYY 181

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            I+++K I+ RGAK+ G+ ++DE A EI+ RSRGTPRIA RLL+RVRD+ E+    TI  
Sbjct: 182 NIDEIKAIIIRGAKILGVKISDEGAIEISKRSRGTPRIANRLLKRVRDYCEIKGNGTIDM 241

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
             A  AL  L +D  G D+LD   +  I  N+ GGPVGIET+S  L E R  +E++ EPY
Sbjct: 242 MSAKNALDMLGVDSSGLDELDRNIINSIIENYDGGPVGIETLSLLLGEDRRTLEEVYEPY 301

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHL 327
           +++ GF++RT RGR++ P A+QH 
Sbjct: 302 LVKIGFLKRTNRGRVVTPKAYQHF 325


>gi|300781060|ref|ZP_07090914.1| crossover junction ATP-dependent DNA helicase RuvB [Corynebacterium
           genitalium ATCC 33030]
 gi|300532767|gb|EFK53828.1| crossover junction ATP-dependent DNA helicase RuvB [Corynebacterium
           genitalium ATCC 33030]
          Length = 358

 Score =  346 bits (887), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 153/326 (46%), Positives = 222/326 (68%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           + +   ++E      LRP++++EF GQ +    L + +E AK R    DH+L  GPPGLG
Sbjct: 23  IDATEHTEERDFEKALRPKSIDEFIGQPKVRQQLGLVLEGAKKRNVVPDHILLSGPPGLG 82

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTT+A +VA+ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++   EE+LY
Sbjct: 83  KTTMAMIVAQELGTSLRMTSGPALERAGDLAAMLSNLMEGDVLFIDEIHRIARPAEEMLY 142

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            AMEDF++D++VG+GP A S+ +++  FTL+ ATTR G+LT PL+DRFG   ++ FY+++
Sbjct: 143 MAMEDFRIDVIVGKGPGATSIPLDIPPFTLVGATTRAGMLTGPLRDRFGFTAQMEFYDVD 202

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           DL  ++ R A + G+ +  +AA EI  RSRGTPRIA RLLRRVRD+AEV     +T E A
Sbjct: 203 DLTRVITRAASILGVDIDRDAAVEIGSRSRGTPRIANRLLRRVRDWAEVNGDGRVTVEAA 262

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
             AL    +D++G D+LD   L  + ++ GGGPVG+ T++  + E    +E++ EPY+++
Sbjct: 263 QQALEVFDVDELGLDRLDRAVLETLIKSHGGGPVGVSTLAIAVGEEPSTVEEVCEPYLVR 322

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIP 332
            G + RT RGR+    AW HLG+  P
Sbjct: 323 AGLMARTGRGRVATASAWHHLGMTPP 348


>gi|227833241|ref|YP_002834948.1| holliday junction DNA helicase [Corynebacterium aurimucosum ATCC
           700975]
 gi|262184227|ref|ZP_06043648.1| Holliday junction DNA helicase RuvB [Corynebacterium aurimucosum
           ATCC 700975]
 gi|254767422|sp|C3PGQ6|RUVB_CORA7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|227454257|gb|ACP33010.1| holliday junction DNA helicase [Corynebacterium aurimucosum ATCC
           700975]
          Length = 361

 Score =  346 bits (887), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 154/325 (47%), Positives = 215/325 (66%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           +     E      LRP++L+EF GQ +    L + +  AK R    DHVL  GPPGLGKT
Sbjct: 29  AAEQQGEHDIERSLRPKSLDEFIGQPKVREQLSLVLNGAKNRGVTPDHVLLSGPPGLGKT 88

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           T+A ++A+ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++   EE+LY A
Sbjct: 89  TMAMIIAQELGSSLRMTSGPALERAGDLAAMLSNLMEGDVLFIDEIHRIARPAEEMLYMA 148

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           MEDF++D++VG+GP A S+ + +  FTL+ ATTR G+LT PL+DRFG   ++ +Y+ EDL
Sbjct: 149 MEDFRIDVIVGKGPGATSIPLEIPPFTLVGATTRAGMLTGPLRDRFGFTAQMEYYDTEDL 208

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             ++ R A++  + +  +AA EI  RSRGTPRIA RLLRRVRD+AEV     I    A A
Sbjct: 209 TRVISRAARILEVDIDQDAAVEIGSRSRGTPRIANRLLRRVRDYAEVNGDGHIDVAAAQA 268

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL    +D+ G D+LD   L  + +  GGGPVG+ T++  + E    +E++ EPY+++ G
Sbjct: 269 ALRVFDVDERGLDRLDRAVLGALIKGHGGGPVGVNTLAIAVGEEPSTVEEVCEPYLVRAG 328

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIPH 333
            I RT RGR+    AWQHLG++ P 
Sbjct: 329 MISRTGRGRVATAAAWQHLGLEAPE 353


>gi|302035799|ref|YP_003796121.1| holliday junction ATP-dependent DNA helicase RuvB [Candidatus
           Nitrospira defluvii]
 gi|300603863|emb|CBK40195.1| Holliday junction ATP-dependent DNA helicase RuvB [Candidatus
           Nitrospira defluvii]
          Length = 345

 Score =  346 bits (887), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 170/326 (52%), Positives = 232/326 (71%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M    + ++    E    + LRP++L+E+ GQ     +L++ IEAAK R EALDH +F G
Sbjct: 1   MSDRTVSNQLTDDERGLEAALRPQSLQEYVGQSRMKDSLEICIEAAKRRGEALDHAIFYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTT+A ++ARE+G   RSTSG V++ AGDLAA+LTNL++RDVLFIDEIHRL   V
Sbjct: 61  PPGLGKTTIAHIIAREMGSAIRSTSGLVLSHAGDLAAILTNLQERDVLFIDEIHRLPASV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE LYPAMED+QLDL+VG+G S R+VK+ L RFTL+ ATTR G LT+PL+DRFG+  RL 
Sbjct: 121 EEALYPAMEDYQLDLVVGQGASTRTVKLELPRFTLVGATTRAGALTSPLRDRFGLVHRLE 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY  ++L +IV R A L  + + +  A EIA R+RGTPRI  RL++R+RD+AE+     I
Sbjct: 181 FYSPQELTSIVTRSAGLLNIPIDEAGAAEIARRARGTPRIVNRLIKRIRDYAEIKAGGRI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           TR++A  AL+ LA+D  G D++D R L  +   F GGPVG+++++A + E R  +ED+ E
Sbjct: 241 TRQVAQDALVWLAVDAAGLDEMDRRILLTVMEKFNGGPVGVDSLAAAVQEDRGTLEDVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHL 327
           PY+IQ GF++RT RGR    +A+ H 
Sbjct: 301 PYLIQAGFLERTGRGRQATRLAFDHF 326


>gi|289207746|ref|YP_003459812.1| Holliday junction DNA helicase RuvB [Thioalkalivibrio sp. K90mix]
 gi|288943377|gb|ADC71076.1| Holliday junction DNA helicase RuvB [Thioalkalivibrio sp. K90mix]
          Length = 348

 Score =  346 bits (887), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 180/328 (54%), Positives = 229/328 (69%), Gaps = 1/328 (0%)

Query: 4   REGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
              L+      ED  +   LRP+ L+++TGQ      L +FIEAA+ R EALDH L  GP
Sbjct: 2   ESRLVDMQSQSEDPRVEVSLRPKRLDDYTGQPRVVEQLGLFIEAARGRGEALDHTLVAGP 61

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA +VA ELGV  R TSGPV+ +AGDLAA+LT LE +DVLF+DEIHRL  +VE
Sbjct: 62  PGLGKTTLAHIVANELGVGLRQTSGPVLERAGDLAAILTALEPQDVLFVDEIHRLPTVVE 121

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILYPA+ED QLD+++GEGP+ARS+K++L  FTL+ ATTR GLL+ PL+DRFGI  RL+ 
Sbjct: 122 EILYPALEDGQLDIVIGEGPAARSIKVDLPPFTLVGATTRAGLLSAPLRDRFGIVQRLDH 181

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y + DL  IV R A L G+ +  E A EIA R RGTPR+A RLLRRVRD+AEV  +  IT
Sbjct: 182 YTVTDLAHIVGRAAGLLGVGIEPEGAAEIARRGRGTPRLANRLLRRVRDYAEVRASGVIT 241

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            E+A  AL  LAID  G D  D R L ++   F GGPVG+E+++  L+E R  +ED++EP
Sbjct: 242 AEVAAQALDLLAIDASGLDAQDRRLLEVLVEKFDGGPVGVESLATALNEDRGTLEDVVEP 301

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           ++IQQG++QRTPRGR          G+ 
Sbjct: 302 FLIQQGYLQRTPRGRQATRRTLAMFGLA 329


>gi|260772520|ref|ZP_05881436.1| holliday junction DNA helicase RuvB [Vibrio metschnikovii CIP
           69.14]
 gi|260611659|gb|EEX36862.1| holliday junction DNA helicase RuvB [Vibrio metschnikovii CIP
           69.14]
          Length = 355

 Score =  346 bits (887), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 166/306 (54%), Positives = 224/306 (73%), Gaps = 3/306 (0%)

Query: 1   MMDREGLL---SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M++ + L+   S    +E+     +RP+ L ++ GQ      +++FI+AA+ R+E LDH+
Sbjct: 1   MIEADRLIAPISPAFKEEEVIDRAIRPKKLADYQGQDHVRDQMEIFIQAAQKRSEPLDHL 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTLA +VA E+ VN R+TSGPV+ KAGDLAALLTNL++ DVLFIDEIHRL
Sbjct: 61  LIFGPPGLGKTTLANIVANEMDVNIRTTSGPVLEKAGDLAALLTNLDENDVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           S ++EE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI 
Sbjct: 121 SPMIEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIV 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            RL +Y + DL+ IVQR A+  GL++  + A E+A R+RGTPRIA RLLRRVRD+AEV  
Sbjct: 181 QRLEYYNVADLQNIVQRSAQCLGLSMDADGALEVARRARGTPRIANRLLRRVRDYAEVKG 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
              I  + A  AL  L +D +GFD +D + L  I   F GGPVG++ ++A + E +D IE
Sbjct: 241 NGHICLDTAGKALDMLDVDHLGFDYMDRKLLLAIMEKFSGGPVGLDNLAAAIGEEKDTIE 300

Query: 298 DLIEPY 303
           D++EP+
Sbjct: 301 DVLEPF 306


>gi|149011129|ref|ZP_01832434.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           SP19-BS75]
 gi|147764765|gb|EDK71695.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           SP19-BS75]
          Length = 332

 Score =  346 bits (887), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 171/323 (52%), Positives = 223/323 (69%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +  E+     LRP+ L E+ GQ +    L++FIEAAK R EALDHVL  GPPGLGKTT+A
Sbjct: 10  MGDEELVERTLRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMA 69

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            V+A ELGVN + TSGPVI KAGDL A+L +LE  DVLFIDEIHRL + VEE+LY AMED
Sbjct: 70  FVIANELGVNLKQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMED 129

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F +D+M+G G  +RSV + L  FTLI ATTR G+L+NPL+ RFGI   + +Y   DL  I
Sbjct: 130 FYIDIMIGAGEGSRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYAHADLTEI 189

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           V+R A +  + +T EAA E+A+RSRGTPRIA RLL+RVRDFA++     I   I D AL 
Sbjct: 190 VERTADIFEMEITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGNGVIDDLITDKALT 249

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L +D  G D +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GFI 
Sbjct: 250 MLDVDHEGLDYVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIM 309

Query: 312 RTPRGRLLMPIAWQHLGIDIPHR 334
           RT  GR+    A++HLG +   +
Sbjct: 310 RTRSGRVATTKAYEHLGYEHSEK 332


>gi|15805623|ref|NP_294319.1| Holliday junction DNA helicase RuvB [Deinococcus radiodurans R1]
 gi|7388247|sp|Q9X719|RUVB_DEIRA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|6458295|gb|AAF10176.1|AE001918_1 Holliday junction DNA helicase [Deinococcus radiodurans R1]
          Length = 333

 Score =  346 bits (887), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 171/321 (53%), Positives = 227/321 (70%), Gaps = 1/321 (0%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           ++  +   + LRP+TL E+ GQ +    L V+++AA+ R EALDH L  GPPGLGKTTLA
Sbjct: 1   MTAPENLDAALRPKTLTEYVGQEKLKDKLGVYLQAARGRREALDHTLLFGPPGLGKTTLA 60

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTN-LEDRDVLFIDEIHRLSIIVEEILYPAME 130
            ++A ELGVN R TSGP I K GDLAA+LTN LE+ DVLFIDEIHRL  + EE LYPAME
Sbjct: 61  HIIAYELGVNIRVTSGPAIEKPGDLAAILTNSLEEGDVLFIDEIHRLGRVAEEHLYPAME 120

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           DF+LD+++G+GP+AR++++ L RFTL+ ATTR GL+T P++ RFGI   L +Y  E++ T
Sbjct: 121 DFKLDIVLGQGPAARTIELPLPRFTLVGATTRPGLITAPMRSRFGIIEHLEYYTAEEIAT 180

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
            + R A+L G  + +EA  EI  RSRGT RIA RLLRRVRD+A+VA   TI  E A +AL
Sbjct: 181 NLLRDARLLGFGLDEEAGLEIGARSRGTMRIAKRLLRRVRDYADVAGETTIGLERAQSAL 240

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
            +L +D  G D  D +YL  +   F GGPVG++T++  +SE    +ED+ EPY+IQ GFI
Sbjct: 241 DKLGLDSAGLDDRDKKYLETLIHRFAGGPVGVDTLATAISEDALTLEDVYEPYLIQLGFI 300

Query: 311 QRTPRGRLLMPIAWQHLGIDI 331
           +RTPRGR+    A+ HLG+  
Sbjct: 301 KRTPRGRVATAHAYDHLGLPP 321


>gi|291008206|ref|ZP_06566179.1| Holliday junction DNA helicase RuvB [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 363

 Score =  346 bits (887), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 161/331 (48%), Positives = 221/331 (66%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           D   L  +  + E    + LRPR L EF GQ      L++ +  A  R +  DHVLF GP
Sbjct: 18  DEVSLAPQQETAEQDVETTLRPRRLSEFVGQARVREQLELVLHGALNRGDQPDHVLFSGP 77

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKT+LA ++A ELG + R TSGP + + GDLAA+L+NL + DVLFIDEIHR++   E
Sbjct: 78  PGLGKTSLAMIIAAELGASIRVTSGPALERPGDLAAMLSNLAEGDVLFIDEIHRIARPAE 137

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LY AMED+++D++VG+GP A S+ + ++ FTL+ ATTR G LT PL+DRFG    + F
Sbjct: 138 EMLYLAMEDYRVDIVVGKGPGATSIPLEIAPFTLVGATTRSGALTGPLRDRFGFTAHMEF 197

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           YE  +L+ +V+R A + G+ + DE A EIA RSRGTPRIA RLLRRVRDFAEV     +T
Sbjct: 198 YEPAELELVVRRSAGILGVDLRDEGAVEIARRSRGTPRIANRLLRRVRDFAEVRADGAVT 257

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            ++A AAL    +D+ G D+LD   L  + R+F GGPVG+ T++  + E    +E++ EP
Sbjct: 258 LDVARAALEVYDVDEHGLDRLDRAVLGALVRSFNGGPVGVSTLAVAVGEEPTTVEEVCEP 317

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           Y+++ G + RTPRGR+    AWQHLG+  P 
Sbjct: 318 YLVRAGMLARTPRGRVATVAAWQHLGLVPPQ 348


>gi|148270159|ref|YP_001244619.1| Holliday junction DNA helicase RuvB [Thermotoga petrophila RKU-1]
 gi|170288886|ref|YP_001739124.1| Holliday junction DNA helicase RuvB [Thermotoga sp. RQ2]
 gi|281412499|ref|YP_003346578.1| Holliday junction DNA helicase RuvB [Thermotoga naphthophila
           RKU-10]
 gi|166231566|sp|A5ILH0|RUVB_THEP1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|238688750|sp|B1LAU3|RUVB_THESQ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|147735703|gb|ABQ47043.1| Holliday junction DNA helicase subunit RuvB [Thermotoga petrophila
           RKU-1]
 gi|170176389|gb|ACB09441.1| Holliday junction DNA helicase RuvB [Thermotoga sp. RQ2]
 gi|281373602|gb|ADA67164.1| Holliday junction DNA helicase RuvB [Thermotoga naphthophila
           RKU-10]
          Length = 334

 Score =  346 bits (887), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 162/328 (49%), Positives = 222/328 (67%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
             L+   +  D+ +  LRP++L+EF GQ      L + +EAAK R E LDHVL  GPPGL
Sbjct: 3   EFLTPERTVYDSGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGL 62

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLA ++A EL  N   TSGPV+ K GD+AA+LT+LE  DVLFIDEIHRL+  VEE+L
Sbjct: 63  GKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNKAVEELL 122

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           Y A+EDFQ+D+M+G+GPSA+S++I++  FTL+ ATTR GLL++PL+ RFGI + L+FY +
Sbjct: 123 YSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTV 182

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           ++LK I++R A L  + + D AA  IA RSRGTPRIA RL +RVRD   V  A  I  +I
Sbjct: 183 KELKEIIKRAASLMDVEIEDSAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDI 242

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
               +  L ID  G D+ D + L  I   + GGPVG+  ++A L    D + ++ EPY++
Sbjct: 243 VLKTMEVLNIDAEGLDEFDRKILKTIIEIYRGGPVGLNALAASLGVEADTLSEVYEPYLL 302

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           Q GF+ RTPRGR+    A++HL  ++P 
Sbjct: 303 QAGFLARTPRGRVATEKAYKHLKYEVPE 330


>gi|322386388|ref|ZP_08060018.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           cristatus ATCC 51100]
 gi|321269612|gb|EFX52542.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           cristatus ATCC 51100]
          Length = 332

 Score =  346 bits (887), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 168/320 (52%), Positives = 226/320 (70%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +  E+     LRP+ L+E+ GQ +    LK+F EAAK R EALDH L  GPPGLGKTT+A
Sbjct: 10  MGDEELVERTLRPQYLQEYIGQDKVKEQLKIFTEAAKLRDEALDHTLLFGPPGLGKTTMA 69

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            V+A ELGVN + TSGPVI K+GDL A+L +LE  DVLFIDEIHRL + VEE+LY AMED
Sbjct: 70  FVIANELGVNLKQTSGPVIEKSGDLVAILNDLEPGDVLFIDEIHRLPMAVEEVLYSAMED 129

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F +D+M+G G ++RSV + L  FTLI ATTR G+L+NPL+ RFGI   + +YE  DL  I
Sbjct: 130 FYIDIMIGTGETSRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYEASDLTEI 189

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           V+R A++  + +T EAA E+A+RSRGTPRIA RLL+RVRD+A++     I  +I D AL 
Sbjct: 190 VERTAEIFEMDITHEAARELALRSRGTPRIANRLLKRVRDYAQIMGNGLIDDKITDQALS 249

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L +D+ G D +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GF+ 
Sbjct: 250 MLDVDQEGLDYVDQKILRTMIEVYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFVM 309

Query: 312 RTPRGRLLMPIAWQHLGIDI 331
           RT  GR+    A++HLG + 
Sbjct: 310 RTRTGRVATRKAYEHLGYEY 329


>gi|86606501|ref|YP_475264.1| Holliday junction DNA helicase RuvB [Synechococcus sp. JA-3-3Ab]
 gi|97189888|sp|Q2JTJ1|RUVB2_SYNJA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB 2
 gi|86555043|gb|ABD00001.1| Holliday junction DNA helicase RuvB [Synechococcus sp. JA-3-3Ab]
          Length = 370

 Score =  346 bits (887), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 175/326 (53%), Positives = 219/326 (67%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           EGLL       +A    LRPRTL E+ GQ E    L + I AA+AR E LDH+LF GPPG
Sbjct: 36  EGLLQPQAHPSEAQEESLRPRTLAEYIGQTELKEVLSIAIAAARARGEPLDHLLFYGPPG 95

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTT+A V+A E+G  F  T+ P +    D+A  L  L+  DVLFIDEIHRL  + EE+
Sbjct: 96  LGKTTVAAVLAAEMGSRFYMTTAPALESPRDIAGYLVRLKQGDVLFIDEIHRLPKVTEEL 155

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPAMEDF+LD+ VG+G SAR   I L RFTLI ATTR+G LT+PL+DRFG   RL FYE
Sbjct: 156 LYPAMEDFRLDITVGKGRSARITSIPLERFTLIGATTRIGALTSPLRDRFGQVQRLRFYE 215

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
             +L  IV R A+L   ++    A EIA RSRGTPRIA RLL+RVRD+A+V     I+RE
Sbjct: 216 PHELAEIVLRSARLLNTSIDRAGAEEIARRSRGTPRIANRLLKRVRDYAQVRGDGHISRE 275

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +A AAL    +D MG D  D + LT++   FGGGPVG+ET++A   E    IE++ EPY+
Sbjct: 276 VAAAALELFQVDPMGLDWTDRKLLTVLVEQFGGGPVGLETMAAVTGEDPQTIEEVYEPYL 335

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGID 330
           +Q G++QRTPRGR++ P A QHLG  
Sbjct: 336 LQIGYLQRTPRGRVVTPAALQHLGYT 361


>gi|296393860|ref|YP_003658744.1| Holliday junction DNA helicase RuvB [Segniliparus rotundus DSM
           44985]
 gi|296181007|gb|ADG97913.1| Holliday junction DNA helicase RuvB [Segniliparus rotundus DSM
           44985]
          Length = 348

 Score =  345 bits (886), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 155/331 (46%), Positives = 216/331 (65%), Gaps = 1/331 (0%)

Query: 3   DREGLLSRN-VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           D +  L    V  E    + LRPR L++F GQ +    L++ +  AK+R    DHVLF G
Sbjct: 6   DPDRPLQPEQVPGEAELDASLRPRALDDFIGQAKVREQLRLLLHGAKSRGTVPDHVLFSG 65

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKT+LA +VA ELG   R TSGP + +AGDLAALL+NL + DVLFIDEIHR++   
Sbjct: 66  PPGLGKTSLAMIVASELGCALRLTSGPALERAGDLAALLSNLVEGDVLFIDEIHRMARPA 125

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMEDF++D++VG+GP A ++ + L+ FTL+ ATTR G LTNPL+DRFG    + 
Sbjct: 126 EEMLYLAMEDFRVDVVVGKGPGAMAIPLTLAPFTLVGATTRTGALTNPLRDRFGFVGHME 185

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY   +L  ++ R AK+  + +  +AA EIA RSRGTPRIA RLLRRVRD+A+V     +
Sbjct: 186 FYTPPELAQVLARSAKILAVELAPDAAIEIASRSRGTPRIANRLLRRVRDYAQVRGDGVV 245

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
               A AAL    +D++G D+LD   L+ +    GGGPVG+ T++  + E    + ++ E
Sbjct: 246 DLAAARAALQIFDVDELGLDRLDRAVLSALVSGHGGGPVGVSTLAVAVGEEPATVAEVCE 305

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           P++++ G + RTPRGR+     W H+G+  P
Sbjct: 306 PFLVRAGLVARTPRGRVATQAGWAHMGLKPP 336


>gi|19745233|ref|NP_606369.1| Holliday junction DNA helicase RuvB [Streptococcus pyogenes
           MGAS8232]
 gi|19747326|gb|AAL96868.1| putative Holliday junction DNA helicase, subunit B [Streptococcus
           pyogenes MGAS8232]
          Length = 354

 Score =  345 bits (886), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 161/327 (49%), Positives = 224/327 (68%), Gaps = 1/327 (0%)

Query: 6   GLLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
            +L  NV   E+     LRP+ L E+ GQ +      +FIEAAK R E+LDHVL  GPPG
Sbjct: 25  RILDNNVMGNEEFSDRTLRPQYLHEYIGQDKVKEQFAIFIEAAKRRDESLDHVLLFGPPG 84

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTT+A V+A ELGVN + TSGP + KAGDL A+L  LE  D+LFIDEIHR+ + VEE+
Sbjct: 85  LGKTTMAFVIANELGVNLKQTSGPAVEKAGDLVAILNELEPGDILFIDEIHRMPMSVEEV 144

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LY AMEDF +D+M+G G ++RS+ ++L  FTLI ATTR G+L+NPL+ RFGI   + +Y+
Sbjct: 145 LYSAMEDFYIDIMIGAGDTSRSIHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYQ 204

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            +DL  IV+R A +  + +  EAA ++A RSRGTPRIA RLL+RVRD+A++     IT +
Sbjct: 205 EKDLTEIVERTATIFEIKIDHEAARKLACRSRGTPRIANRLLKRVRDYAQIIGDGIITAQ 264

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           I D AL  L +D+ G + +D + L  +   + GGPVG+ T+S  ++E R+ +E++ EPY+
Sbjct: 265 ITDRALTMLDVDREGLNYIDQKILRTMIEMYQGGPVGLGTLSVNIAEERNTVEEMYEPYL 324

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           IQ+GF+ RT  GR+    A++HLG   
Sbjct: 325 IQKGFLMRTRTGRVATQKAYRHLGYPY 351


>gi|283853684|ref|ZP_06370915.1| Holliday junction DNA helicase RuvB [Desulfovibrio sp. FW1012B]
 gi|283570925|gb|EFC18954.1| Holliday junction DNA helicase RuvB [Desulfovibrio sp. FW1012B]
          Length = 335

 Score =  345 bits (886), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 167/311 (53%), Positives = 225/311 (72%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           +    +RP  L+EF GQ E  +NL+VF+ AA  +  ALDH L  GPPGLGKTTLAQ++A 
Sbjct: 19  SPEDTIRPSKLDEFIGQDELRANLRVFLRAAMEQGRALDHSLLYGPPGLGKTTLAQIMAS 78

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           ELGVN  +T+GPV+ + GDLAA++TNL   D+LFIDEIHR+   VEEILYPAMED++LDL
Sbjct: 79  ELGVNLVTTTGPVLERCGDLAAIVTNLRRGDILFIDEIHRMPPAVEEILYPAMEDYKLDL 138

Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA 196
           ++G+GP AR+V+I+L  FTL+ ATTR+GLLT+PL+DRFG+  RL FY  ++L  IV R A
Sbjct: 139 IIGQGPGARTVRIDLEPFTLVGATTRLGLLTSPLRDRFGVIFRLEFYNPDELARIVTRAA 198

Query: 197 KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAID 256
            + G+ VT   A  +  RSRGTPRIA RLLRR+RDFA VA A T+   +A  AL RL +D
Sbjct: 199 AILGIGVTPAGARVVGERSRGTPRIANRLLRRLRDFAVVAGAATLDEGLAKEALARLDVD 258

Query: 257 KMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRG 316
             G DQ+D + L ++  ++ GGPVG++T++  +SE    +E++ EPY+IQ G I+RTPRG
Sbjct: 259 PQGLDQMDRKILEVLIGHYEGGPVGVKTLAVAISEEVRTLEEIYEPYLIQCGLIKRTPRG 318

Query: 317 RLLMPIAWQHL 327
           R+    A+ H+
Sbjct: 319 RVATAKAYAHI 329


>gi|332701177|ref|ZP_08421265.1| Holliday junction ATP-dependent DNA helicase ruvB [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332551326|gb|EGJ48370.1| Holliday junction ATP-dependent DNA helicase ruvB [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 322

 Score =  345 bits (886), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 168/311 (54%), Positives = 222/311 (71%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RPR+L++F GQ +  +NL V++ AA+    A+DH LF G PGLGKTTLAQ++A 
Sbjct: 8   QPEETIRPRSLDDFVGQDDLRANLSVYLSAAREGRRAIDHTLFYGNPGLGKTTLAQIMAS 67

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           E+GVN  STSGPV+ ++GDLAA+LTNL   D LFIDEIHR+   VEE+LYPAMEDF++DL
Sbjct: 68  EMGVNLVSTSGPVLERSGDLAAILTNLGRHDFLFIDEIHRMPANVEEVLYPAMEDFKIDL 127

Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA 196
           ++G+GP AR+VKI L  FTL+ ATTR+GLLT+PL+DRFG   RL FY  E L TI++R A
Sbjct: 128 IIGQGPGARTVKIELEPFTLVGATTRLGLLTSPLRDRFGCIFRLEFYSPEQLATIIRRAA 187

Query: 197 KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAID 256
            + G AV+D  A  I  RSRGTPRIA RLLRRVRDFA     + I  E+A  AL R+ +D
Sbjct: 188 GILGTAVSDAGAMTIGRRSRGTPRIANRLLRRVRDFAVFQGKQIIDEELASQALDRMDVD 247

Query: 257 KMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRG 316
             G D +D + L+++  ++ GGPVG++T++   SE    IED+ EPY+IQ GF++RT RG
Sbjct: 248 DSGLDYMDRKILSVVINHYQGGPVGLKTLAVACSEEVRTIEDIYEPYLIQCGFLKRTSRG 307

Query: 317 RLLMPIAWQHL 327
           R+    A+ HL
Sbjct: 308 RVATAKAYAHL 318


>gi|46580660|ref|YP_011468.1| Holliday junction DNA helicase RuvB [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120602037|ref|YP_966437.1| Holliday junction DNA helicase RuvB [Desulfovibrio vulgaris DP4]
 gi|47606084|sp|P61531|RUVB_DESVH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|166231488|sp|A1VC44|RUVB_DESVV RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|46450079|gb|AAS96728.1| Holliday junction DNA helicase RuvB [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120562266|gb|ABM28010.1| Holliday junction DNA helicase subunit RuvB [Desulfovibrio vulgaris
           DP4]
 gi|311234389|gb|ADP87243.1| Holliday junction DNA helicase RuvB [Desulfovibrio vulgaris RCH1]
          Length = 320

 Score =  345 bits (886), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 172/311 (55%), Positives = 236/311 (75%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +RPR L++F GQ E  +N++V+++AA+ R +A+DHVLF G PGLGKTTLAQ++A EL
Sbjct: 8   DESVRPRLLDDFIGQDELRANMRVYLDAARERGQAMDHVLFYGNPGLGKTTLAQIMAGEL 67

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138
           GVN  STSGPV+ ++GDLAA+LTNL   D+LF+DEIHR+ I VEE+LYPAMEDF+LDL++
Sbjct: 68  GVNLVSTSGPVLERSGDLAAILTNLGRHDLLFVDEIHRMPIAVEEVLYPAMEDFKLDLVI 127

Query: 139 GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKL 198
           G+GP AR+VKI++  FTL+ ATTR+GLL++PL+DRFGI  RL +Y   DL  IV R A++
Sbjct: 128 GQGPGARTVKIDVEPFTLVGATTRIGLLSSPLRDRFGIISRLEYYTPADLARIVARTARI 187

Query: 199 TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKM 258
            G  +T+E A EI  R+RGTPRIA RLLRRVRDFA V     I+ ++A  AL R+ +D+ 
Sbjct: 188 IGANLTEEGAIEIGRRARGTPRIANRLLRRVRDFATVHAGGVISADLASEALGRMEVDES 247

Query: 259 GFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRL 318
           G DQ+D + L ++  ++GGGPVGI+T++   +E    IED+ EPY+IQ GF++RTPRGR+
Sbjct: 248 GLDQMDRKLLEVLIEHYGGGPVGIKTLAVACAEEVRTIEDIYEPYLIQCGFLKRTPRGRV 307

Query: 319 LMPIAWQHLGI 329
               A++HL +
Sbjct: 308 ATAKAYRHLNL 318


>gi|282896461|ref|ZP_06304481.1| Holliday junction DNA helicase RuvB [Raphidiopsis brookii D9]
 gi|281198567|gb|EFA73448.1| Holliday junction DNA helicase RuvB [Raphidiopsis brookii D9]
          Length = 328

 Score =  345 bits (886), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 157/319 (49%), Positives = 216/319 (67%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           + ++D     +RPR   ++ GQ +    L + I+AAK+R + +DH+L  GP GLGKTT+A
Sbjct: 1   MGEDDKQEDSIRPRRFADYIGQQDLKDVLDIAIKAAKSRGDVMDHLLLYGPAGLGKTTMA 60

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            ++A E+GVN++ TS P + +  D+  LL NL+  DVLFIDEIHRLS + EEILYPAMED
Sbjct: 61  MILASEMGVNYKITSAPALERPRDIVGLLVNLKPGDVLFIDEIHRLSRMTEEILYPAMED 120

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           ++LD+ +G+G  A+   I LS+FTL+ ATTRVG LT+PL+DRFG+  +L FY++E+L  I
Sbjct: 121 YRLDVTIGKGSGAKVRTIPLSKFTLVGATTRVGALTSPLRDRFGLVQKLRFYQVEELSQI 180

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           V R A++    V  E A EIA RSRGTPRIA RLL+RVRD+A V     I +  A  AL 
Sbjct: 181 VLRSAEVLQTIVNLEGAREIAKRSRGTPRIANRLLKRVRDYAIVKSRPQIDQPTAAEALT 240

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
              +D  G D  D + LT+I  NF GGPVG+ET++A   E    IE++ EPY++Q G++ 
Sbjct: 241 LFQVDPCGLDWTDRKMLTVIIENFHGGPVGLETLAAATGEDTQTIEEVYEPYLMQIGYLS 300

Query: 312 RTPRGRLLMPIAWQHLGID 330
           RTPRGR++   A+QHLG  
Sbjct: 301 RTPRGRVVTSAAYQHLGFQ 319


>gi|315023979|gb|EFT36981.1| Holliday junction DNA helicase RuvB [Riemerella anatipestifer
           RA-YM]
          Length = 340

 Score =  345 bits (886), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 167/318 (52%), Positives = 224/318 (70%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           ++E      +RP++ ++F GQ     NL+VF+ AAK R  ALDH L  GPPGLGKTTLA 
Sbjct: 14  AEELLLEEQIRPQSFKDFAGQRRTLDNLEVFVAAAKKRGSALDHTLLHGPPGLGKTTLAH 73

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++A ELGV F+ TSGPV+ K G LA LLTNLE+ DVLFIDEIHRLS +VEE LY AMED+
Sbjct: 74  IIANELGVGFKVTSGPVLDKPGSLAGLLTNLEENDVLFIDEIHRLSPVVEEYLYSAMEDY 133

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           ++D+M+  GP+ARSV+INL+ FTL+ ATTR G+LT P+  RFGI  RL +Y +E L  I+
Sbjct: 134 KIDIMLETGPNARSVQINLNPFTLVGATTRSGMLTKPMLARFGIQSRLEYYTVELLGMII 193

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           +R A++ G+ + ++AA EIA RSRGTPRIA  LLRRVRDFAE+     I  +I   AL  
Sbjct: 194 ERSARVLGVPIYEDAALEIARRSRGTPRIANALLRRVRDFAEIKGNGEIEIKITKFALDS 253

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D+ G D +D + + ++  NF G PVGI  ++  + E  + +E++ EP++IQ+GFI R
Sbjct: 254 LNVDEFGLDDMDNKIMRVMIENFKGKPVGISALATSIGENPETLEEVYEPFLIQEGFIIR 313

Query: 313 TPRGRLLMPIAWQHLGID 330
           TPRGR +   A+QHL I 
Sbjct: 314 TPRGREVTDKAYQHLNIS 331


>gi|116628600|ref|YP_821219.1| Holliday junction DNA helicase RuvB [Streptococcus thermophilus
           LMD-9]
 gi|116101877|gb|ABJ67023.1| Holliday junction DNA helicase subunit RuvB [Streptococcus
           thermophilus LMD-9]
 gi|312279261|gb|ADQ63918.1| Holliday junction ATP-dependent DNA helicase ruvB [Streptococcus
           thermophilus ND03]
          Length = 318

 Score =  345 bits (886), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 163/313 (52%), Positives = 223/313 (71%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              LRP+  +E+ GQ +    LK+FIEAAK R EALDH L  GPPGLGKTT+A V+A E+
Sbjct: 2   ERTLRPQYFKEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANEM 61

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138
           GVN + TSGP I KAGDL A+L +LE  D+LFIDEIHR+ + VEE+LY AMED+ +D+M+
Sbjct: 62  GVNLKQTSGPAIEKAGDLVAILNDLEPGDILFIDEIHRMPMAVEEVLYSAMEDYYIDIMI 121

Query: 139 GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKL 198
           G G ++RSV ++L  FTL+ ATTR G+L+NPL+ RFGI   + +YE+ DL  IV+R +++
Sbjct: 122 GAGETSRSVHLDLPPFTLVGATTRAGMLSNPLRARFGINGHMEYYELPDLTEIVERTSEI 181

Query: 199 TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKM 258
             + +T EAA E+A RSRGTPRIA RLL+RVRD+A++     I  +IAD AL  L +D  
Sbjct: 182 FEMTITPEAALELARRSRGTPRIANRLLKRVRDYAQIMGDGVIDDKIADQALTMLDVDHE 241

Query: 259 GFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRL 318
           G D +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GFI RT  GR+
Sbjct: 242 GLDYVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRTGRV 301

Query: 319 LMPIAWQHLGIDI 331
               A++H+G D 
Sbjct: 302 ATAKAYEHMGYDY 314


>gi|28871122|ref|NP_793741.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213969186|ref|ZP_03397325.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv.
           tomato T1]
 gi|28854372|gb|AAO57436.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213926184|gb|EEB59740.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv.
           tomato T1]
          Length = 312

 Score =  345 bits (886), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 182/295 (61%), Positives = 230/295 (77%)

Query: 40  LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAAL 99
           +++FI+AA+ R+EALDH L  GPPGLGKTTLA ++A+E+GV+ +STSGPV+ + GDLAA+
Sbjct: 1   MELFIQAARGRSEALDHTLIFGPPGLGKTTLANIIAQEMGVSIKSTSGPVLERPGDLAAI 60

Query: 100 LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA 159
           LTNLE  DVLFIDEIHRLS IVEE+LYPAMEDFQLD+M+GEGP+ARS+K++L  FTL+ A
Sbjct: 61  LTNLEPNDVLFIDEIHRLSPIVEEVLYPAMEDFQLDIMIGEGPAARSIKLDLPPFTLVGA 120

Query: 160 TTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTP 219
           TTR G+LTNPL+DRFGI  RL FY I DL TIV R A + GL +    A EIA R+RGTP
Sbjct: 121 TTRAGMLTNPLRDRFGIVQRLEFYNIADLSTIVARSAGILGLVIEPAGAFEIARRARGTP 180

Query: 220 RIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGP 279
           RIA RLLRRVRDFA+V     ITR+ AD AL  L +D+ GFD  D R L  +   F GGP
Sbjct: 181 RIANRLLRRVRDFAQVRGNGQITRQTADKALNLLDVDEHGFDHQDRRLLLTMIEKFDGGP 240

Query: 280 VGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           VG+++++A +SE R  IED++EPY+IQQG+I RTPRGR++   A+ H G++IP R
Sbjct: 241 VGVDSLAAAISEERHTIEDVLEPYLIQQGYIMRTPRGRVVTRHAYLHFGLNIPTR 295


>gi|306836239|ref|ZP_07469222.1| crossover junction ATP-dependent DNA helicase RuvB [Corynebacterium
           accolens ATCC 49726]
 gi|304567893|gb|EFM43475.1| crossover junction ATP-dependent DNA helicase RuvB [Corynebacterium
           accolens ATCC 49726]
          Length = 336

 Score =  345 bits (886), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 157/327 (48%), Positives = 216/327 (66%), Gaps = 1/327 (0%)

Query: 8   LSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           +      E+ DI   LRP++L EF GQ +    L + +  AK R    DHVL  GPPGLG
Sbjct: 4   VEATAHAEEHDIERSLRPKSLTEFIGQPKVREQLSLVLTGAKNRGVTPDHVLLSGPPGLG 63

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTT+A ++++ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++   EE+LY
Sbjct: 64  KTTMAMIISQELGTSLRMTSGPALERAGDLAAMLSNLMEGDVLFIDEIHRIARPAEEMLY 123

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            AMEDF++D++VG+GP A S+ + +  FTL+ ATTR G+LT PL+DRFG   ++ +Y  E
Sbjct: 124 MAMEDFRIDVIVGKGPGATSIPLEIPPFTLVGATTRAGMLTGPLRDRFGFTAQMEYYSTE 183

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           DL  +++R A +  +A+ D+AA EI  RSRGTPRIA RLLRRVRD+AEV     I    A
Sbjct: 184 DLTRVIKRAAHILDVAIDDDAAVEIGSRSRGTPRIANRLLRRVRDYAEVNGTGRIDLSAA 243

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
             AL    +D+MG D+LD   L  +    GGGPVG+ T++  + E    +E++ EPY+++
Sbjct: 244 QGALEVFDVDEMGLDRLDRAVLNALINGHGGGPVGVNTLAIAVGEEPSTVEEVCEPYLVR 303

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            G I RT RGR+    AWQHLG+  P 
Sbjct: 304 AGMISRTGRGRVATAAAWQHLGLTPPD 330


>gi|315637758|ref|ZP_07892960.1| crossover junction ATP-dependent DNA helicase RuvB [Arcobacter
           butzleri JV22]
 gi|315477979|gb|EFU68710.1| crossover junction ATP-dependent DNA helicase RuvB [Arcobacter
           butzleri JV22]
          Length = 345

 Score =  345 bits (886), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 168/331 (50%), Positives = 234/331 (70%), Gaps = 1/331 (0%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M R   +     +ED +   LRP   +++ GQ +   NL+VFI+A+K R EALDH+LF G
Sbjct: 1   MQRLVEVESVSFEEDNNEISLRPSNWDDYIGQEKIKKNLRVFIDASKKRKEALDHILFYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTL+ +++ E+  N + T+GP+I K+GDLAA+LTNLE+ D+LFIDEIHRLS  V
Sbjct: 61  PPGLGKTTLSYLISNEMNTNIKVTAGPMIEKSGDLAAILTNLEEGDILFIDEIHRLSPAV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILYPAMED++LD+++G GP+A++VKI+L RFTLI ATTR G+L+NPL++RFG+  R+ 
Sbjct: 121 EEILYPAMEDYRLDIIIGSGPAAQTVKIDLPRFTLIGATTRAGMLSNPLRERFGMHFRMQ 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY  E+L  I+Q+ A   G    D+AA EI+ RSRGTPR+A RLLRRVRDF+EV + K I
Sbjct: 181 FYTHEELAKIIQKAAIKLGKNCEDDAALEISKRSRGTPRVALRLLRRVRDFSEVENEKYI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
             +    AL  L +++ GFD++D+  L ++  N  G P+G+ TI+A LSE    IED IE
Sbjct: 241 HIKRCKYALDELGVNESGFDEMDINLLELLISN-RGKPMGLSTIAAALSEDEGTIEDAIE 299

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           PY++  G+I+RT RGR+     ++   +  P
Sbjct: 300 PYLLANGYIERTARGRVASVKTYEMFRLSYP 330


>gi|239907718|ref|YP_002954459.1| holliday junction DNA helicase RuvB [Desulfovibrio magneticus RS-1]
 gi|239797584|dbj|BAH76573.1| holliday junction DNA helicase RuvB [Desulfovibrio magneticus RS-1]
          Length = 333

 Score =  345 bits (886), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 175/323 (54%), Positives = 231/323 (71%), Gaps = 4/323 (1%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           EGL+    S +D     +RP  L +F GQ +  +NLKVF+ AA  +   LDH L  GPPG
Sbjct: 10  EGLIPAAPSPDDT----IRPSRLADFIGQDDLRANLKVFLRAALEQGRTLDHSLLYGPPG 65

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLAQ++A ELGVN   T+GPV+ + GDLAA++TNL   D+LFIDEIHR+   VEEI
Sbjct: 66  LGKTTLAQIMASELGVNLVQTTGPVLERCGDLAAIVTNLRRGDILFIDEIHRMPAAVEEI 125

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPAMEDF+LDL++G+GP AR+V+I+L  FTL+ ATTR+GLLT+PL+DRFG+  RL FY 
Sbjct: 126 LYPAMEDFKLDLIIGQGPGARTVRIDLEPFTLVGATTRLGLLTSPLRDRFGVIFRLEFYG 185

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            ++L  IV R A + G+A+T + A  I  RSRGTPRIAGRLLRRVRDFA VA A+T+  E
Sbjct: 186 PDELARIVTRAAGILGIAITPDGALAIGQRSRGTPRIAGRLLRRVRDFAVVAGAQTLDGE 245

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +A  AL RL +D  G D +D + L  +  ++ GGPVG++T++  LSE    +E++ EPY+
Sbjct: 246 LAAKALARLDVDPHGLDMMDRKILETLIHHYEGGPVGVKTLAVALSEEVRTLEEIYEPYL 305

Query: 305 IQQGFIQRTPRGRLLMPIAWQHL 327
           IQ G I+RTPRGR+    A+ H+
Sbjct: 306 IQCGLIKRTPRGRVATAKAYAHI 328


>gi|134098597|ref|YP_001104258.1| Holliday junction DNA helicase RuvB [Saccharopolyspora erythraea
           NRRL 2338]
 gi|172044126|sp|A4FBA8|RUVB_SACEN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|133911220|emb|CAM01333.1| Holliday junction DNA helicase RuvB [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 353

 Score =  345 bits (885), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 161/331 (48%), Positives = 221/331 (66%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           D   L  +  + E    + LRPR L EF GQ      L++ +  A  R +  DHVLF GP
Sbjct: 8   DEVSLAPQQETAEQDVETTLRPRRLSEFVGQARVREQLELVLHGALNRGDQPDHVLFSGP 67

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKT+LA ++A ELG + R TSGP + + GDLAA+L+NL + DVLFIDEIHR++   E
Sbjct: 68  PGLGKTSLAMIIAAELGASIRVTSGPALERPGDLAAMLSNLAEGDVLFIDEIHRIARPAE 127

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LY AMED+++D++VG+GP A S+ + ++ FTL+ ATTR G LT PL+DRFG    + F
Sbjct: 128 EMLYLAMEDYRVDIVVGKGPGATSIPLEIAPFTLVGATTRSGALTGPLRDRFGFTAHMEF 187

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           YE  +L+ +V+R A + G+ + DE A EIA RSRGTPRIA RLLRRVRDFAEV     +T
Sbjct: 188 YEPAELELVVRRSAGILGVDLRDEGAVEIARRSRGTPRIANRLLRRVRDFAEVRADGAVT 247

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            ++A AAL    +D+ G D+LD   L  + R+F GGPVG+ T++  + E    +E++ EP
Sbjct: 248 LDVARAALEVYDVDEHGLDRLDRAVLGALVRSFNGGPVGVSTLAVAVGEEPTTVEEVCEP 307

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           Y+++ G + RTPRGR+    AWQHLG+  P 
Sbjct: 308 YLVRAGMLARTPRGRVATVAAWQHLGLVPPQ 338


>gi|71902701|ref|YP_279504.1| Holliday junction DNA helicase RuvB [Streptococcus pyogenes
           MGAS6180]
 gi|71801796|gb|AAX71149.1| holliday junction DNA helicase [Streptococcus pyogenes MGAS6180]
          Length = 356

 Score =  345 bits (885), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 161/327 (49%), Positives = 224/327 (68%), Gaps = 1/327 (0%)

Query: 6   GLLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
            +L  +V   E+     LRP+ L E+ GQ +      +FIEAAK R E+LDHVL  GPPG
Sbjct: 27  RILDNDVMGNEEFSDRTLRPQYLHEYIGQDKVKEQFAIFIEAAKRRDESLDHVLLFGPPG 86

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTT+A V+A ELGVN + TSGP + KAGDL A+L  LE  D+LFIDEIHR+ + VEE+
Sbjct: 87  LGKTTMAFVIANELGVNLKQTSGPAVEKAGDLVAILNELEPGDILFIDEIHRMPMSVEEV 146

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LY AMEDF +D+M+G G ++RS+ ++L  FTLI ATTR G+L+NPL+ RFGI   + +Y+
Sbjct: 147 LYSAMEDFYIDIMIGAGDTSRSIHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYQ 206

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            +DL  IV+R A +  + +  EAA ++A RSRGTPRIA RLL+RVRD+A++     IT +
Sbjct: 207 EKDLTEIVERTATIFEIKIDHEAARKLACRSRGTPRIANRLLKRVRDYAQIIGDGIITAQ 266

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           I D AL  L +D+ G D +D + L  +   + GGPVG+ T+S  ++E R+ +E++ EPY+
Sbjct: 267 ITDRALTMLDVDREGLDYIDQKILRTMIEMYQGGPVGLGTLSVNIAEERNTVEEMYEPYL 326

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           IQ+GF+ RT  GR+    A++HLG   
Sbjct: 327 IQKGFLMRTRTGRVATQKAYRHLGYPY 353


>gi|294085861|ref|YP_003552621.1| Holliday junction resolvasome, helicase subunit [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292665436|gb|ADE40537.1| Holliday junction resolvasome, helicase subunit [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 350

 Score =  345 bits (885), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 196/332 (59%), Positives = 245/332 (73%), Gaps = 2/332 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M + E L++ +    +   + LRP +L EF GQ     NL+ FI AA+ R +A+DH L  
Sbjct: 1   MNEDERLVNPDHV--ERGDNALRPTSLGEFIGQGNGRQNLETFIHAARDRGDAMDHTLLH 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLAQ+V+ ELGV FR TSGPVIA+AGDLAALLTNL  RDVLFIDEIHRL+ +
Sbjct: 59  GPPGLGKTTLAQIVSSELGVGFRGTSGPVIARAGDLAALLTNLRPRDVLFIDEIHRLAPV 118

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDFQLDL++GEGPSARSV+I+L  FTL+ ATTR GLLT PL+DRFGI +R+
Sbjct: 119 VEEVLYPAMEDFQLDLIIGEGPSARSVRIDLPPFTLVGATTRSGLLTTPLRDRFGIQMRM 178

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  ++L  I+ R A   GL +  + A EIA R+RGTPR+AGRLLRRVRD A VA    
Sbjct: 179 QFYTRDELALILHRQAVKLGLDLAADGASEIAGRARGTPRVAGRLLRRVRDIAAVAGHNR 238

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +T EIAD AL RL +D  G D +D RYL+ +A ++ GGPVG+ET++A LSE RD +E++I
Sbjct: 239 VTAEIADTALHRLEVDAAGLDAMDRRYLSCLAESYAGGPVGVETLAAVLSEQRDVLEEVI 298

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EPY++Q G + RTPRGR L    W +LGI  P
Sbjct: 299 EPYLMQTGLLMRTPRGRCLSSGGWSYLGITPP 330


>gi|307299319|ref|ZP_07579120.1| Holliday junction DNA helicase RuvB [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306915115|gb|EFN45501.1| Holliday junction DNA helicase RuvB [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 349

 Score =  345 bits (885), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 173/333 (51%), Positives = 230/333 (69%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M  E  L+    QED  I  LRP+TL+E+ GQ +    L+V IEAAK R EALDH L  G
Sbjct: 1   MREERFLTPGEVQEDNSIKSLRPKTLQEYIGQNQIRQRLRVAIEAAKVRREALDHTLLAG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A ELG     TSGPVI K GDLAA+LT LE  DVLFIDEIHRL+  V
Sbjct: 61  PPGLGKTTLAHIIANELGSEIYVTSGPVIEKQGDLAAILTGLERDDVLFIDEIHRLNRSV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILY AMEDFQLD+M+G+GPSARS++++L+ FTL+ ATTR G +  PL++RFG+ + + 
Sbjct: 121 EEILYSAMEDFQLDIMIGKGPSARSIRLDLNPFTLVGATTRSGFIGAPLRNRFGMILEME 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY   DLK I+ R A L G ++ D+AA  +A RSRGTPRIA RLLRRVRD   V     I
Sbjct: 181 FYPDRDLKQIILRSATLLGTSIRDDAALLLARRSRGTPRIANRLLRRVRDIVTVEGESEI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T E  ++A+  L+ID  G D +D + L+++  ++ GGP G++ I+A L    + I ++ E
Sbjct: 241 TMETVESAMTLLSIDSEGLDSMDKKLLSILIESYNGGPAGVKAIAASLGIEPETISEVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           P+++Q GF+ RT RGR++   A++HLG+ +  R
Sbjct: 301 PFLLQSGFLVRTSRGRMVTEKAYRHLGLPLEGR 333


>gi|262202232|ref|YP_003273440.1| Holliday junction DNA helicase RuvB [Gordonia bronchialis DSM
           43247]
 gi|262085579|gb|ACY21547.1| Holliday junction DNA helicase RuvB [Gordonia bronchialis DSM
           43247]
          Length = 363

 Score =  345 bits (885), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 161/330 (48%), Positives = 225/330 (68%), Gaps = 1/330 (0%)

Query: 4   REGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
            +  +S    + D D+   LRPR+L EF GQ   C  L++ +  AK R    DH+L  GP
Sbjct: 10  EDREVSALPVRSDGDLDAGLRPRSLAEFIGQPRVCEQLELVLHGAKGRGGTPDHILLSGP 69

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKT+LA ++A E+G   R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++   E
Sbjct: 70  PGLGKTSLAMIIAAEMGAAIRVTSGPALERAGDLAAMLSNLVEGDVLFIDEIHRIARPAE 129

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LY AMEDF++D++VG+GP A S+ ++++ FTL+ ATTR G LT PL+DRFG    + F
Sbjct: 130 EMLYLAMEDFRVDVVVGKGPGATSIPLDVAPFTLVGATTRSGSLTGPLRDRFGFTAHMEF 189

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y+  +L  +++R A + G+ + D+AA EIA RSRGTPRIA RLLRRVRD+AEV    TIT
Sbjct: 190 YDTTELVHVLRRSAGILGIVLGDDAASEIASRSRGTPRIANRLLRRVRDYAEVRGDGTIT 249

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            + A AAL    +D++GFD+LD   L  + R FGGGPVG+ T++  + E    +E++ EP
Sbjct: 250 VDTARAALAVYDVDELGFDRLDRAVLNALIRAFGGGPVGVSTLAVAVGEEPATVEEVCEP 309

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++++ G + RTPRGR+    AW HLG+  P
Sbjct: 310 FLVRAGMVARTPRGRVATAAAWHHLGLTPP 339


>gi|25010124|ref|NP_734519.1| Holliday junction DNA helicase RuvB [Streptococcus agalactiae
           NEM316]
 gi|76787346|ref|YP_328775.1| Holliday junction DNA helicase RuvB [Streptococcus agalactiae A909]
 gi|77405263|ref|ZP_00782360.1| Holliday junction DNA helicase RuvB [Streptococcus agalactiae H36B]
 gi|44888495|sp|Q8E7U6|RUVB_STRA3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|97190359|sp|Q3K3X8|RUVB_STRA1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|23094475|emb|CAD45694.1| unknown [Streptococcus agalactiae NEM316]
 gi|76562403|gb|ABA44987.1| Holliday junction DNA helicase RuvB [Streptococcus agalactiae A909]
 gi|77176159|gb|EAO78931.1| Holliday junction DNA helicase RuvB [Streptococcus agalactiae H36B]
 gi|319744005|gb|EFV96385.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           agalactiae ATCC 13813]
          Length = 332

 Score =  345 bits (885), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 169/324 (52%), Positives = 223/324 (68%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L S  +  E+     LRP+ L E+ GQ +    LK+FIEAAK R E+LDHVL  GPPGLG
Sbjct: 5   LDSDAMGDEELVERTLRPQYLREYIGQDKVKDQLKIFIEAAKLRDESLDHVLLFGPPGLG 64

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTT+A V+A ELGVN + TSGP I K+GDL A+L +LE  DVLFIDEIHR+ + VEE+LY
Sbjct: 65  KTTMAFVIANELGVNLKQTSGPAIEKSGDLVAILNDLEPGDVLFIDEIHRMPMAVEEVLY 124

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            AMEDF +D+M+G G ++RSV ++L  FTLI ATTR G+L+NPL+ RFGI   + +YE  
Sbjct: 125 SAMEDFYIDIMIGAGETSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYEEN 184

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           DL  I++R A +  + +T EAA E+A RSRGTPRIA RLL+RVRD+A++     I   I 
Sbjct: 185 DLTEIIERTADIFEMKITYEAASELARRSRGTPRIANRLLKRVRDYAQIMGDGLIDDNIT 244

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           D AL  L +D  G D +D + L  +   + GGPVG+ T+S  ++E RD +ED+ EPY+IQ
Sbjct: 245 DKALTMLDVDHEGLDYVDQKILRTMIEMYNGGPVGLGTLSVNIAEERDTVEDMYEPYLIQ 304

Query: 307 QGFIQRTPRGRLLMPIAWQHLGID 330
           +GFI RT  GR+    A++HLG  
Sbjct: 305 KGFIMRTRTGRVATDKAYEHLGYQ 328


>gi|227504982|ref|ZP_03935031.1| crossover junction endodeoxyribonuclease [Corynebacterium striatum
           ATCC 6940]
 gi|227198432|gb|EEI78480.1| crossover junction endodeoxyribonuclease [Corynebacterium striatum
           ATCC 6940]
          Length = 367

 Score =  345 bits (885), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 153/327 (46%), Positives = 216/327 (66%), Gaps = 1/327 (0%)

Query: 8   LSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           +     Q + DI   LRP++++EF GQ +    L + +  AK R    DHVL  GPPGLG
Sbjct: 33  VDATKQQGEHDIERSLRPKSIDEFIGQPKVREQLSLVLNGAKNRGVTPDHVLLSGPPGLG 92

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTT+A ++A+ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++   EE+LY
Sbjct: 93  KTTMAMIIAQELGTSLRMTSGPALERAGDLAAMLSNLMEGDVLFIDEIHRIARPAEEMLY 152

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            AMEDF++D++VG+GP A S+ + +  FTL+ ATTR G+LT PL+DRFG   ++ +Y+  
Sbjct: 153 MAMEDFRIDVIVGKGPGATSIPLEIPPFTLVGATTRAGMLTGPLRDRFGFTAQMEYYDTA 212

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           DL  ++ R A +  + +  +AA EI  RSRGTPRIA RLLRRVRDFAEV     I    A
Sbjct: 213 DLTKVITRAATILDVEIDQDAAVEIGSRSRGTPRIANRLLRRVRDFAEVNGDGHIDLAAA 272

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
             AL    +D+MG D+LD   L  + +  GGGPVG+ T++  + E    +E++ EPY+++
Sbjct: 273 QGALAVFDVDEMGLDRLDRAVLEALIKGHGGGPVGVNTLAVAVGEEPSTVEEVCEPYLVR 332

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            G I RT RGR+    AW+H+G++ P 
Sbjct: 333 AGMIARTGRGRVATAAAWRHIGLEPPE 359


>gi|213966114|ref|ZP_03394301.1| holliday junction DNA helicase RuvB [Corynebacterium amycolatum
           SK46]
 gi|213951212|gb|EEB62607.1| holliday junction DNA helicase RuvB [Corynebacterium amycolatum
           SK46]
          Length = 370

 Score =  345 bits (885), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 158/320 (49%), Positives = 221/320 (69%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           +E    S LRP++L EF GQ +    L + +  A+ R    DH+L  GPPGLGKTT+A +
Sbjct: 46  EEVDAESNLRPKSLGEFIGQPKVREQLDLVLSGARGRNVTPDHILLSGPPGLGKTTMAMI 105

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +A+E+G + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++  VEE+LY AMEDF+
Sbjct: 106 IAQEMGSSLRMTSGPALIRAGDLAAMLSNLLEGDVLFIDEIHRIARPVEEMLYMAMEDFR 165

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           +D++VG+GP A S+ + +  FTL+ ATTR G+LT PL+DRFG   ++ FYE+EDL  +V 
Sbjct: 166 IDVIVGKGPGATSIPLEIPPFTLVGATTRSGMLTGPLRDRFGFTAQMEFYEVEDLTKVVT 225

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A + G+ ++ EAA EIA RSRGTPRIA RLLRRVRDFA+V     I    A AAL+  
Sbjct: 226 RAAGILGVDISPEAAVEIASRSRGTPRIANRLLRRVRDFADVHSGGVIDLGAAKAALIVF 285

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D++G D+LD   LT + +  GGGPVG+ +++  + E    +E++ EPY+++ G I RT
Sbjct: 286 DVDELGLDRLDRAVLTALVKGHGGGPVGVNSLALAVGEEPSTVEEVCEPYLVRAGMIART 345

Query: 314 PRGRLLMPIAWQHLGIDIPH 333
            RGR+    AW+HLG+  P 
Sbjct: 346 SRGRVATARAWRHLGLQPPE 365


>gi|296170844|ref|ZP_06852405.1| crossover junction ATP-dependent DNA helicase RuvB [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295894500|gb|EFG74241.1| crossover junction ATP-dependent DNA helicase RuvB [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 347

 Score =  345 bits (885), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 168/333 (50%), Positives = 230/333 (69%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M D E  LS  ++  + DI   LRPR+L EF GQ      L++ IE AK R    DH+L 
Sbjct: 2   MDDAERELSPALAVGEGDIDVSLRPRSLREFIGQPRVREQLQLVIEGAKNRGGTPDHILL 61

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKT+LA ++A ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++ 
Sbjct: 62  SGPPGLGKTSLAMIIAAELGSSLRVTSGPALERAGDLAAMLSNLVEHDVLFIDEIHRIAR 121

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
             EE+LY AMEDF++D++VG+GP A S+ + ++ FTL+ ATTR G LT PL+DRFG    
Sbjct: 122 PAEEMLYLAMEDFRVDVVVGKGPGATSIPLEVAPFTLVGATTRSGALTGPLRDRFGFTAH 181

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           ++FYE  +L+ ++ R A + G+ +  EAA EIA RSRGTPRIA RLLRRVRDFAEV    
Sbjct: 182 MDFYEPAELELVLARSAGILGIELGAEAAEEIARRSRGTPRIANRLLRRVRDFAEVRADG 241

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            ITR++A +AL    +D++G D+LD   LT + R+FGGGPVG+ T++  + E    +E++
Sbjct: 242 VITRDVAKSALAVYDVDELGLDRLDRAVLTALTRSFGGGPVGVSTLAVAVGEEATTVEEV 301

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
            EP++++ G + RTPRGR+    AW HLG+  P
Sbjct: 302 CEPFLVRAGMVARTPRGRVATAQAWTHLGMSPP 334


>gi|218248327|ref|YP_002373698.1| Holliday junction DNA helicase RuvB [Cyanothece sp. PCC 8801]
 gi|257060346|ref|YP_003138234.1| Holliday junction DNA helicase RuvB [Cyanothece sp. PCC 8802]
 gi|226725456|sp|B7K1K0|RUVB_CYAP8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|218168805|gb|ACK67542.1| Holliday junction DNA helicase RuvB [Cyanothece sp. PCC 8801]
 gi|256590512|gb|ACV01399.1| Holliday junction DNA helicase RuvB [Cyanothece sp. PCC 8802]
          Length = 360

 Score =  345 bits (885), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 159/326 (48%), Positives = 227/326 (69%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           +    +++     +RP  LE++ GQ +  S L + +EAAK R ++LDH+L  GPPGLGKT
Sbjct: 31  TPTHQEKETSEEKIRPHRLEDYIGQKDLKSILAIAMEAAKTRQDSLDHLLLYGPPGLGKT 90

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           T++ ++A E+GVN + T+ P + +  D+  LL NL+  D+LFIDEIHRL+ + EE+LYPA
Sbjct: 91  TISLILASEMGVNCKITAAPALERPRDITGLLINLKPGDILFIDEIHRLNRLTEELLYPA 150

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           MED++LD+ +G+G +AR+  I+L +FTLI ATT+VG LT+PL+DRFG+  RL FYE+++L
Sbjct: 151 MEDYRLDITIGKGKAARTQSIHLPKFTLIGATTKVGALTSPLRDRFGLIQRLRFYEVDEL 210

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             IV R A++   AVT+E A EIA RSRGTPRIA RLLRRVRD+ +V +  TI +E+A  
Sbjct: 211 TLIVLRTAQILDTAVTEEGATEIARRSRGTPRIANRLLRRVRDYMQVKNGTTIDQELASE 270

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL    +DK G D +D   L  +   F GGPVG+E I+A   E    IE++ EPY++Q G
Sbjct: 271 ALDIYQVDKQGLDWIDRLILETMINQFKGGPVGLEAIAASTGEDAKTIEEVYEPYLLQIG 330

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIPHR 334
           F+ RTPRGR++  +A+QHLG+    +
Sbjct: 331 FLNRTPRGRVVSAVAYQHLGLTSEEQ 356


>gi|22536234|ref|NP_687085.1| Holliday junction DNA helicase RuvB [Streptococcus agalactiae
           2603V/R]
 gi|44888492|sp|Q8E2D9|RUVB_STRA5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|22533054|gb|AAM98957.1|AE014194_2 Holliday junction DNA helicase RuvB [Streptococcus agalactiae
           2603V/R]
          Length = 332

 Score =  345 bits (885), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 169/324 (52%), Positives = 223/324 (68%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L S  +  E+     LRP+ L E+ GQ +    LK+FIEAAK R E+LDHVL  GPPGLG
Sbjct: 5   LDSDAMGDEELVERTLRPQYLREYIGQDKVKDQLKIFIEAAKLRDESLDHVLLFGPPGLG 64

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTT+A V+A ELGVN + TSGP I K+GDL A+L +LE  DVLFIDEIHR+ + VEE+LY
Sbjct: 65  KTTMAFVIANELGVNLKQTSGPAIEKSGDLVAILNDLEPGDVLFIDEIHRMPMAVEEVLY 124

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            AMEDF +D+M+G G ++RSV ++L  FTLI ATTR G+L+NPL+ RFGI   + +YE  
Sbjct: 125 SAMEDFYIDIMIGAGETSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYEEN 184

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           DL  I++R A +  + +T EAA E+A RSRGTPRIA RLL+RVRD+A++     I   I 
Sbjct: 185 DLTEIIERTADIFEMKITYEAASELARRSRGTPRIANRLLKRVRDYAQIMGDGLIDDNIT 244

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           D AL  L +D  G D +D + L  +   + GGPVG+ T+S  ++E RD +ED+ EPY+IQ
Sbjct: 245 DKALTMLDVDHEGLDYVDQKILRTMIEMYNGGPVGLGTLSVNIAEERDTVEDMYEPYLIQ 304

Query: 307 QGFIQRTPRGRLLMPIAWQHLGID 330
           +GFI RT  GR+    A++HLG  
Sbjct: 305 KGFIMRTRTGRVATVKAYEHLGYQ 328


>gi|303249146|ref|ZP_07335386.1| Holliday junction DNA helicase RuvB [Desulfovibrio fructosovorans
           JJ]
 gi|302489471|gb|EFL49418.1| Holliday junction DNA helicase RuvB [Desulfovibrio fructosovorans
           JJ]
          Length = 341

 Score =  345 bits (885), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 171/308 (55%), Positives = 221/308 (71%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +RP  L EF GQ +  +NL+VF+ AA  +  ALDH L  GPPGLGKTTLAQ++A EL
Sbjct: 27  DDSIRPSKLAEFIGQDDLRANLRVFLHAAMEQGRALDHSLLYGPPGLGKTTLAQIMASEL 86

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138
           GVN  +T+GPV+ + GDLAA++TNL   D+LFIDEIHR+   VEEILYPAMEDF+LDL++
Sbjct: 87  GVNLVTTTGPVLERCGDLAAIVTNLRRGDILFIDEIHRMPPAVEEILYPAMEDFKLDLII 146

Query: 139 GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKL 198
           G+GP AR+V+I+L  FTL+ ATTR+GLLT+PL+DRFG+  RL FY  E+L  IV R A +
Sbjct: 147 GQGPGARTVRIDLEPFTLVGATTRLGLLTSPLRDRFGVIFRLEFYSPEELARIVTRSAGI 206

Query: 199 TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKM 258
            G+ VT   A  +  RSRGTPRIA RLLRR+RDFA VA A T+   +A  AL RL +D  
Sbjct: 207 LGIGVTPGGALVVGQRSRGTPRIANRLLRRLRDFAVVAGASTLDETLAGEALARLDVDPH 266

Query: 259 GFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRL 318
           G DQ+D + L  I R++ GGPVG++T++  LSE    IE++ EPY+IQ G I+RT RGR+
Sbjct: 267 GLDQMDRKILETIIRHYEGGPVGVKTLAVALSEEVRTIEEIYEPYLIQCGLIKRTARGRV 326

Query: 319 LMPIAWQH 326
               A+ H
Sbjct: 327 ATAKAYAH 334


>gi|313206903|ref|YP_004046080.1| holliday junction DNA helicase ruvb [Riemerella anatipestifer DSM
           15868]
 gi|312446219|gb|ADQ82574.1| Holliday junction DNA helicase RuvB [Riemerella anatipestifer DSM
           15868]
 gi|325335660|gb|ADZ11934.1| Holliday junction resolvasome, helicase subunit [Riemerella
           anatipestifer RA-GD]
          Length = 340

 Score =  345 bits (885), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 166/318 (52%), Positives = 225/318 (70%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           ++E      +RP++ ++F GQ     NL+VF+ AAK R  ALDH L  GPPGLGKTTLA 
Sbjct: 14  AEELLLEEQIRPQSFKDFAGQRRTLDNLEVFVAAAKKRGSALDHTLLHGPPGLGKTTLAH 73

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++A ELGV F+ TSGPV+ K G LA LLTNLE+ DVLFIDEIHRLS +VEE LY AMED+
Sbjct: 74  IIANELGVGFKVTSGPVLDKPGSLAGLLTNLEENDVLFIDEIHRLSPVVEEYLYSAMEDY 133

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           ++D+M+  GP+ARSV+INL+ FTL+ ATTR G+LT P+  RFGI  RL +Y +E L  I+
Sbjct: 134 KIDIMLETGPNARSVQINLNPFTLVGATTRSGMLTKPMLARFGIQSRLEYYTVELLGMII 193

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           +R A++ G+ + ++AA EIA RSRGTPRIA  LLRRVRDFAE+     I  +I   AL  
Sbjct: 194 ERSARVLGIPIYEDAALEIARRSRGTPRIANALLRRVRDFAEIKGNGEIEIKITKFALDS 253

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D+ G D +D + + ++  NF G PVGI  ++  + E  + +E++ EP++IQ+GFI R
Sbjct: 254 LNVDEFGLDDMDNKIMRVMIENFKGKPVGISALATSIGENPETLEEVYEPFLIQEGFIIR 313

Query: 313 TPRGRLLMPIAWQHLGID 330
           TPRGR +   A++HL I+
Sbjct: 314 TPRGREVTDKAYKHLNIN 331


>gi|227503512|ref|ZP_03933561.1| crossover junction endodeoxyribonuclease [Corynebacterium accolens
           ATCC 49725]
 gi|227076015|gb|EEI13978.1| crossover junction endodeoxyribonuclease [Corynebacterium accolens
           ATCC 49725]
          Length = 359

 Score =  345 bits (885), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 157/327 (48%), Positives = 216/327 (66%), Gaps = 1/327 (0%)

Query: 8   LSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           +      E+ DI   LRP++L EF GQ +    L + +  AK R    DHVL  GPPGLG
Sbjct: 27  VEATAHAEEHDIERSLRPKSLTEFIGQPKVREQLSLVLTGAKNRGVTPDHVLLSGPPGLG 86

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTT+A ++++ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++   EE+LY
Sbjct: 87  KTTMAMIISQELGTSLRMTSGPALERAGDLAAMLSNLMEGDVLFIDEIHRIARPAEEMLY 146

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            AMEDF++D++VG+GP A S+ + +  FTL+ ATTR G+LT PL+DRFG   ++ +Y  E
Sbjct: 147 MAMEDFRIDVIVGKGPGATSIPLEIPPFTLVGATTRAGMLTGPLRDRFGFTAQMEYYSTE 206

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           DL  +++R A +  +A+ D+AA EI  RSRGTPRIA RLLRRVRD+AEV     I    A
Sbjct: 207 DLTRVIKRAAHILDVAIDDDAAVEIGSRSRGTPRIANRLLRRVRDYAEVNGTGRIDLSAA 266

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
             AL    +D+MG D+LD   L  +    GGGPVG+ T++  + E    +E++ EPY+++
Sbjct: 267 QGALEVFDVDEMGLDRLDRAVLNALINGHGGGPVGVNTLAIAVGEEPSTVEEVCEPYLVR 326

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            G I RT RGR+    AWQHLG+  P 
Sbjct: 327 AGMISRTGRGRVATAAAWQHLGLTPPD 353


>gi|94987667|ref|YP_595768.1| Holliday junction DNA helicase RuvB [Streptococcus pyogenes
           MGAS9429]
 gi|94991534|ref|YP_599633.1| Holliday junction DNA helicase RuvB [Streptococcus pyogenes
           MGAS2096]
 gi|94541175|gb|ABF31224.1| holliday junction DNA helicase [Streptococcus pyogenes MGAS9429]
 gi|94545042|gb|ABF35089.1| Holliday junction DNA helicase ruvB [Streptococcus pyogenes
           MGAS2096]
          Length = 356

 Score =  345 bits (885), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 161/327 (49%), Positives = 224/327 (68%), Gaps = 1/327 (0%)

Query: 6   GLLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
            +L  +V   E+     LRP+ L E+ GQ +      +FIEAAK R E+LDHVL  GPPG
Sbjct: 27  RILDNDVMGNEEFSDRTLRPQYLREYIGQDKVKEQFAIFIEAAKRRDESLDHVLLFGPPG 86

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTT+A V+A ELGVN + TSGP + KAGDL A+L  LE  D+LFIDEIHR+ + VEE+
Sbjct: 87  LGKTTMAFVIANELGVNLKQTSGPAVEKAGDLVAILNELEPGDILFIDEIHRMPMSVEEV 146

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LY AMEDF +D+M+G G ++RS+ ++L  FTLI ATTR G+L+NPL+ RFGI   + +Y+
Sbjct: 147 LYSAMEDFYIDIMIGAGDTSRSIHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYQ 206

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            +DL  IV+R A +  + +  EAA ++A RSRGTPRIA RLL+RVRD+A++     IT +
Sbjct: 207 EKDLTEIVERTATIFEIKIDHEAARKLACRSRGTPRIANRLLKRVRDYAQIIGDGIITAQ 266

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           I D AL  L +D+ G D +D + L  +   + GGPVG+ T+S  ++E R+ +E++ EPY+
Sbjct: 267 ITDRALTMLDVDREGLDYIDQKILRTMIEMYQGGPVGLGTLSVNIAEERNTVEEMYEPYL 326

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           IQ+GF+ RT  GR+    A++HLG   
Sbjct: 327 IQKGFLMRTRTGRVATQKAYRHLGYPY 353


>gi|54025665|ref|YP_119907.1| Holliday junction DNA helicase RuvB [Nocardia farcinica IFM 10152]
 gi|68715295|sp|Q5YTE8|RUVB_NOCFA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|54017173|dbj|BAD58543.1| putative Holliday junction DNA helicase A subunit [Nocardia
           farcinica IFM 10152]
          Length = 357

 Score =  345 bits (884), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 156/331 (47%), Positives = 223/331 (67%), Gaps = 1/331 (0%)

Query: 3   DREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
             +  +S +  + D +I   LRP++L++F GQ      L + +  AK R    DHVL  G
Sbjct: 4   HDDSPVSPSFLKSDGEIEASLRPKSLDDFIGQPRVREQLALVLRGAKQRGSTPDHVLLSG 63

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKT++A ++A ELG   R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++   
Sbjct: 64  PPGLGKTSMAMIIAAELGTALRITSGPALERAGDLAAMLSNLVEGDVLFIDEIHRIARPA 123

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMEDF++D++VG+GP A S+ ++++ FTL+ ATTR G LT PL+DRFG    ++
Sbjct: 124 EEMLYLAMEDFRVDVVVGKGPGATSIPLDIAPFTLVGATTRSGALTGPLRDRFGFTGHMD 183

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FYE  +L  I++R A++ G+ +  +AA EIA RSRGTPRIA RLLRRVRD+AEV     +
Sbjct: 184 FYEPGELLRILERSAQILGVRIETDAAAEIAGRSRGTPRIANRLLRRVRDYAEVRADGIV 243

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T  +A AAL    +D +G D+LD   L  + R F GGPVG+ T++  + E    +E++ E
Sbjct: 244 TLPVARAALEVYDVDTLGLDRLDRAVLDALVRGFHGGPVGVSTLAVAVGEEATTVEEVCE 303

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           P++++ G + RTPRGR+    AW+HLG+  P
Sbjct: 304 PFLVRAGLVARTPRGRVATAAAWEHLGLVPP 334


>gi|300787172|ref|YP_003767463.1| holliday junction DNA helicase RuvB [Amycolatopsis mediterranei
           U32]
 gi|299796686|gb|ADJ47061.1| holliday junction DNA helicase RuvB [Amycolatopsis mediterranei
           U32]
          Length = 350

 Score =  345 bits (884), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 161/332 (48%), Positives = 225/332 (67%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M + E L +   + E+     LRPR L+EF GQ      L++ +E+A+ R    DHVL  
Sbjct: 1   MEEEEALSAWVQTGEENVEGTLRPRKLDEFVGQPRVREQLELVLESARRRGVPPDHVLLS 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKT++A +VA ELG   R TSGP + +AGDLAA+L+NL   DVLFIDEIHR++  
Sbjct: 61  GPPGLGKTSMAMIVAAELGAAIRITSGPALERAGDLAAMLSNLAPGDVLFIDEIHRIARP 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            EE+LY AMEDF++D++VG+GP A S+ + ++ FTL+ ATTR G LT PL+DRFG   ++
Sbjct: 121 AEEMLYLAMEDFRVDVVVGKGPGATSIPLEIAPFTLVGATTRSGSLTGPLRDRFGFTGQM 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY   +L+ +V+R A +  + +  +   EIA RSRGTPRIA RLLRRVRD+AEV     
Sbjct: 181 EFYTDAELELVVRRAATILDIPIDRDGCAEIAGRSRGTPRIANRLLRRVRDYAEVRADGK 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +TR++A AAL    +D++G D+LD   LT + R+FGGGPVGI T++  + E    +E++ 
Sbjct: 241 VTRDVARAALAVYDVDELGLDRLDRAVLTALTRSFGGGPVGISTLAVAVGEEATTVEEVC 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EPY+++ G + RTPRGR+    AW+HLG+  P
Sbjct: 301 EPYLVRAGMLARTPRGRVATATAWEHLGLVPP 332


>gi|73662427|ref|YP_301208.1| Holliday junction DNA helicase RuvB [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
 gi|97190353|sp|Q49Y79|RUVB_STAS1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|72494942|dbj|BAE18263.1| Holliday junction DNA helicase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 334

 Score =  345 bits (884), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 169/327 (51%), Positives = 234/327 (71%), Gaps = 2/327 (0%)

Query: 2   MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD + ++ +++  E++   L LRP  L ++ GQ    SNL+VFI+AAK R E LDHVL  
Sbjct: 1   MD-DRMVDQSMHDEESSFELSLRPTKLRQYIGQSTIKSNLEVFIKAAKMRQEPLDHVLLF 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTL+ ++A E+ VN R  SGP I + GDLAA+L++L+  DVLFIDEIHRLS +
Sbjct: 60  GPPGLGKTTLSNIIANEMEVNIRIISGPSIERPGDLAAILSSLQPGDVLFIDEIHRLSSV 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE+LYPAMEDF LD+++G+G  ARS++I+L  FTLI ATTR G LT PL+DRFG+ +RL
Sbjct: 120 VEEVLYPAMEDFFLDIVIGKGEEARSIRIDLPPFTLIGATTRAGSLTAPLRDRFGVHLRL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +Y+  +LK I+ R A++ G ++ DE+A E+A RSRGTPR+A RLL+RVRDF +V   + 
Sbjct: 180 EYYQELELKEIIVRTAEVLGTSIDDESAIELAKRSRGTPRVANRLLKRVRDFQQVNEDEL 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I+     A+L  L +D  G D +D + +  I   + GGPVG++TI+  + E R  IED+ 
Sbjct: 240 ISIATTRASLQLLQVDDEGLDYIDHKMMNCILEQYKGGPVGLDTIAVSIGEERVTIEDVY 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHL 327
           EP++IQ+GFI+RTPRGR   P A++H 
Sbjct: 300 EPFLIQKGFIERTPRGRKATPYAFEHF 326


>gi|226356836|ref|YP_002786576.1| Holliday junction DNA helicase RuvB [Deinococcus deserti VCD115]
 gi|226318826|gb|ACO46822.1| putative Holliday junction ATP-dependent DNA helicase ruvB
           [Deinococcus deserti VCD115]
          Length = 334

 Score =  345 bits (884), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 170/314 (54%), Positives = 224/314 (71%), Gaps = 1/314 (0%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
            + LRP+TL E+ GQ +    L V+++AAK R EALDH L  GPPGLGKTTLA ++A EL
Sbjct: 9   DAALRPKTLTEYVGQEKLKDKLGVYLQAAKGRREALDHTLLFGPPGLGKTTLAHIIAAEL 68

Query: 79  GVNFRSTSGPVIAKAGDLAALLTN-LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           GVN R TSGP I K GDLAA+LTN LE+ DVLFIDEIHRL  + EE LYPAMEDF+LD++
Sbjct: 69  GVNIRVTSGPAIEKPGDLAAILTNSLEEGDVLFIDEIHRLGRVAEEHLYPAMEDFKLDIV 128

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
           +G+GP+AR++++ L RFTL+ ATTR GL+T P++ RFGI   L +Y  E++ T + R A+
Sbjct: 129 LGQGPAARTIELPLPRFTLVGATTRPGLITAPMRSRFGIIEHLEYYTAEEIGTNLLRDAR 188

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257
           L G  + ++AA EI  RSRGT RIA RLLRRVRD+A+VA    I+ E A  AL +  +D 
Sbjct: 189 LLGFGLEEDAALEIGARSRGTMRIAKRLLRRVRDYADVAGETVISLERAHDALDKQGLDA 248

Query: 258 MGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317
            G D  D +YL  +   F GGPVG++T++  +SE    +ED+ EPY+IQ GFI+RTPRGR
Sbjct: 249 AGLDDRDKKYLETLIHRFAGGPVGVDTLATAISEDALTLEDVYEPYLIQLGFIKRTPRGR 308

Query: 318 LLMPIAWQHLGIDI 331
           +    A+ HLG+ +
Sbjct: 309 VATAHAYDHLGLPV 322


>gi|297195497|ref|ZP_06912895.1| Holliday junction DNA helicase B [Streptomyces pristinaespiralis
           ATCC 25486]
 gi|197722112|gb|EDY66020.1| Holliday junction DNA helicase B [Streptomyces pristinaespiralis
           ATCC 25486]
          Length = 356

 Score =  345 bits (884), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 157/328 (47%), Positives = 221/328 (67%), Gaps = 1/328 (0%)

Query: 6   GLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
            L++ +   ED A  + LRPRTL+EF GQ      L + + AA+ R    DHVL  G PG
Sbjct: 14  RLVTPSADTEDSAVEAALRPRTLDEFVGQERVRQQLDLVLRAARQRGATADHVLLSGAPG 73

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTL+ ++A E+    R TSGP I  AGDLAA+L++L++ +VLF+DEIHR+S   EE+
Sbjct: 74  LGKTTLSMIIASEMNAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEM 133

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LY AMEDF++D++VG+GP A ++ + L  FTL+ ATTR GLL  PL+DRFG    + FYE
Sbjct: 134 LYMAMEDFRVDVIVGKGPGATAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTAHMEFYE 193

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
             +L+ ++ R A+L  + +  + A EIA RSRGTPRIA RLLRRVRD+A+V     + RE
Sbjct: 194 PVELERVIHRSAQLLDVEIDPDGAAEIAGRSRGTPRIANRLLRRVRDYAQVEADGRVDRE 253

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +A AAL    +D  G D+LD   L  + + FGGGPVG+ T++  + E R+ +E++ EP++
Sbjct: 254 VAAAALQVYEVDTRGLDRLDRAVLQALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPFL 313

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           +++G + RTPRGR+  P AW HLG+  P
Sbjct: 314 VREGLLARTPRGRVATPAAWAHLGLTPP 341


>gi|126657563|ref|ZP_01728719.1| Holliday junction DNA helicase RuvB [Cyanothece sp. CCY0110]
 gi|126621267|gb|EAZ91980.1| Holliday junction DNA helicase RuvB [Cyanothece sp. CCY0110]
          Length = 358

 Score =  345 bits (884), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 157/327 (48%), Positives = 223/327 (68%), Gaps = 1/327 (0%)

Query: 3   DREGLLSRNVSQE-DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           DRE L +   +Q+ D     +RP + +E+ GQ +    L + IEAAK R E +DH+L  G
Sbjct: 20  DRELLKTTQTTQDKDNLEESIRPHSFDEYIGQKDLKDVLSIVIEAAKTRNEPMDHLLLYG 79

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTT++ ++A E+GVN + T+ P + +  D+  LL NL+  D+LFIDEIHRL+ + 
Sbjct: 80  PPGLGKTTISLILASEMGVNCKITAAPALERPRDITGLLVNLKPGDILFIDEIHRLNRLT 139

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMED++L++ +G+G +AR+  I L +FTL+ ATT+VG LT+PL+DRFG+  RL 
Sbjct: 140 EELLYPAMEDYRLEITIGKGQAARTRSIPLPKFTLVGATTKVGSLTSPLRDRFGLIQRLK 199

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY+ E+L  I++R AKL   ++T++ + EI  RSRGTPRIA RLLRRVRD+ +V    TI
Sbjct: 200 FYDPEELALIIKRTAKLLNTSITEQGSQEIGRRSRGTPRIANRLLRRVRDYIQVKKFDTI 259

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T+E+A  AL    +D  G D  D   L  +   F GGPVG+E ++A   E    IE++ E
Sbjct: 260 TQELAAEALNIYQVDPQGLDWTDRLILETMITQFDGGPVGLEAVAAATGEDAKTIEEVYE 319

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLG 328
           PY++Q G+I RTPRGR++   A+QHLG
Sbjct: 320 PYLLQIGYINRTPRGRVVTTAAYQHLG 346


>gi|15825805|pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
          Length = 334

 Score =  345 bits (884), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 161/328 (49%), Positives = 223/328 (67%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
             L+   +  D+ +  LRP++L+EF GQ      L + +EAAK R E LDHVL  GPPGL
Sbjct: 3   EFLTPERTVYDSGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGL 62

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLA ++A EL  N   TSGPV+ K GD+AA+LT+LE  DVLFIDEIHRL+  VEE+L
Sbjct: 63  GKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNKAVEELL 122

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           Y A+EDFQ+D+M+G+GPSA+S++I++  FTL+ +TTR GLL++PL+ RFGI + L+FY +
Sbjct: 123 YSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGSTTRSGLLSSPLRSRFGIILELDFYTV 182

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           ++LK I++R A L  + + D AA  IA RSRGTPRIA RL +RVRD   V  A  I  +I
Sbjct: 183 KELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDI 242

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
               +  L ID  G D+ D + L  I   + GGPVG+  ++A L    D + ++ EPY++
Sbjct: 243 VLKTMEVLNIDDEGLDEFDRKILKTIIEIYRGGPVGLNALAASLGVEADTLSEVYEPYLL 302

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           Q GF+ RTPRGR++   A++HL  ++P 
Sbjct: 303 QAGFLARTPRGRIVTEKAYKHLKYEVPE 330


>gi|239939963|ref|ZP_04691900.1| Holliday junction DNA helicase RuvB [Streptomyces roseosporus NRRL
           15998]
 gi|239986447|ref|ZP_04707111.1| Holliday junction DNA helicase RuvB [Streptomyces roseosporus NRRL
           11379]
 gi|291443394|ref|ZP_06582784.1| holliday junction DNA helicase B [Streptomyces roseosporus NRRL
           15998]
 gi|291346341|gb|EFE73245.1| holliday junction DNA helicase B [Streptomyces roseosporus NRRL
           15998]
          Length = 361

 Score =  344 bits (883), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 160/330 (48%), Positives = 223/330 (67%), Gaps = 1/330 (0%)

Query: 5   EGLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           + L+  +   ED A  + LRP+ L+EF GQ +    L + ++AA+AR    DHVL  G P
Sbjct: 20  DRLVDADADGEDTAVEAALRPKDLDEFVGQEKVREQLDLVLKAARARGATADHVLLSGAP 79

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTL+ ++A E+    R TSGP I  AGDLAA+L++L++ +VLF+DEIHR+S   EE
Sbjct: 80  GLGKTTLSMIIAAEMNAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEE 139

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LY AMEDF++D++VG+GP A ++ + L  FTL+ ATTR GLL  PL+DRFG    + FY
Sbjct: 140 MLYMAMEDFRVDVIVGKGPGATAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTGHMEFY 199

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
              +L+ +V R A+L  + +  E A EIA RSRGTPRIA RLLRRVRD+A+V    TI R
Sbjct: 200 APAELERVVHRSARLLDVGIDVEGAAEIAGRSRGTPRIANRLLRRVRDYAQVKAEGTIDR 259

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           EIA AAL    +D  G D+LD   L  + + FGGGPVG+ T++  + E R+ +E++ EP+
Sbjct: 260 EIAAAALKVYEVDARGLDRLDRAVLGALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPF 319

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           ++++G + RTPRGR+  P AW HLG+  P 
Sbjct: 320 LVREGLLARTPRGRVATPAAWAHLGLVPPQ 349


>gi|332523602|ref|ZP_08399854.1| Holliday junction DNA helicase RuvB [Streptococcus porcinus str.
           Jelinkova 176]
 gi|332314866|gb|EGJ27851.1| Holliday junction DNA helicase RuvB [Streptococcus porcinus str.
           Jelinkova 176]
          Length = 332

 Score =  344 bits (883), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 166/330 (50%), Positives = 226/330 (68%), Gaps = 1/330 (0%)

Query: 6   GLLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
            +L  +V   E+     LRP+ L E+ GQ +    L +FIEAAK R E+LDHVL  GPPG
Sbjct: 3   RILDNDVMGDEELVERTLRPQFLREYIGQDKVKDQLNIFIEAAKMRDESLDHVLLFGPPG 62

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTT+A V+A ELGVN + TSGP I K+GDL A+L +LE  DVLFIDEIHR+ + VEE+
Sbjct: 63  LGKTTMAFVIANELGVNLKQTSGPAIEKSGDLVAILNDLEPGDVLFIDEIHRIPMAVEEV 122

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LY AMEDF +D+M+G G ++RSV + L  FTLI ATTR G+L+NPL+ RFGI   + +Y+
Sbjct: 123 LYSAMEDFYIDIMIGAGDTSRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYQ 182

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           ++DL  I++R + +  + +  EAA E+A RSRGTPRIA RLL+RVRD+A++     IT++
Sbjct: 183 VDDLTEIIERTSDIFDMEIVQEAAHELARRSRGTPRIANRLLKRVRDYAQIMGNGIITKD 242

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           I D AL  L +D  G D +D + L  +   + GGPVG+ T+S  ++E RD +ED+ EPY+
Sbjct: 243 ITDKALEMLDVDHEGLDYVDQKILRTMIEMYNGGPVGLGTLSVNIAEERDTVEDMYEPYL 302

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           IQ+GFI RT  GR+    A+QHL      +
Sbjct: 303 IQKGFIVRTRTGRVATQKAYQHLHYPYNEK 332


>gi|118586982|ref|ZP_01544414.1| Holliday junction DNA helicase [Oenococcus oeni ATCC BAA-1163]
 gi|118432604|gb|EAV39338.1| Holliday junction DNA helicase [Oenococcus oeni ATCC BAA-1163]
          Length = 338

 Score =  344 bits (883), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 165/333 (49%), Positives = 223/333 (66%), Gaps = 2/333 (0%)

Query: 1   MMDREG-LLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M D +  +L      ++ D  L LRP+ L E+ GQ E    L V+++AAK R EALDHVL
Sbjct: 1   MNDEDQKILDAKPMADEIDSELTLRPKYLREYIGQKEIKDQLSVYLKAAKQRDEALDHVL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA V+A E+G   ++TSGP I K GDL ALL  L   D+LFIDEIHRL 
Sbjct: 61  LFGPPGLGKTTLAIVIANEMGAKIKTTSGPAIEKTGDLVALLNELTAGDILFIDEIHRLP 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
             VEE+LY AMEDF +D++VG+G +A ++   L  FTLI ATTR G+L+ PL+DRFGI  
Sbjct: 121 KSVEEVLYSAMEDFYVDIVVGQGETAHAIHFPLPPFTLIGATTRAGMLSAPLRDRFGIVA 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
            + FY + DLK I +R A++   ++    A E+A+RSRGTPRI  RLL+RVRDFA+VA  
Sbjct: 181 HMQFYPVSDLKLIAKRTAEIFDTSIAGSGAAELALRSRGTPRIVNRLLKRVRDFAQVAGK 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
            TI  +I D+AL +L +D  G D+ DL+YL  +   + GGP G+  +++ + E  + +E+
Sbjct: 241 DTIDEQIVDSALNKLHVDARGLDETDLKYLNTLIHQYKGGPAGVNALASNIGEDSETVEE 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           ++EPY++Q GFIQRTPRGR     A++HL I  
Sbjct: 301 MVEPYLLQIGFIQRTPRGRQATQAAYEHLQIPY 333


>gi|293192653|ref|ZP_06609607.1| holliday junction DNA helicase RuvB [Actinomyces odontolyticus
           F0309]
 gi|292820160|gb|EFF79157.1| holliday junction DNA helicase RuvB [Actinomyces odontolyticus
           F0309]
          Length = 346

 Score =  344 bits (883), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 162/331 (48%), Positives = 221/331 (66%), Gaps = 1/331 (0%)

Query: 3   DREGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           D   +++ +  + E A  + LRP+ L EF GQ      L++ ++AA+ R+ + DHVL  G
Sbjct: 8   DAMRIVAPDAGELERAAEAALRPKKLSEFVGQRVVRGQLQLVLDAARMRSASPDHVLLAG 67

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+G + R TSGP I  AGDLAA+L+ L++ DVLFIDEIHRL+   
Sbjct: 68  PPGLGKTTLAMIIAAEMGTSLRLTSGPAIQHAGDLAAILSGLQEGDVLFIDEIHRLARTA 127

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMEDF++D++VG+GP A S+ + L  FT++ ATTR GLL  PL+DRFG    L 
Sbjct: 128 EEMLYLAMEDFRVDVVVGKGPGATSIPLTLPPFTVVGATTRSGLLPAPLRDRFGFTAHLE 187

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FYE ++L+++V R A L G  +  +AA EIA RSRGTPRIA RLLRRV D+A+V     +
Sbjct: 188 FYETDELQSVVTRSASLLGSPIDAQAAHEIASRSRGTPRIANRLLRRVVDYAQVHGDGQL 247

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T E A  AL    +D  G D+LD   L  I R F GGPVG+ T+S  + E  + +E + E
Sbjct: 248 TLEAARGALELFEVDPSGLDRLDRAVLEAICRRFAGGPVGLTTLSVTIGEEAETVETVAE 307

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           PY++++GF+ RT RGR+    AW HLG+  P
Sbjct: 308 PYLVREGFLVRTNRGRMATAKAWAHLGLTPP 338


>gi|256832600|ref|YP_003161327.1| Holliday junction DNA helicase RuvB [Jonesia denitrificans DSM
           20603]
 gi|256686131|gb|ACV09024.1| Holliday junction DNA helicase RuvB [Jonesia denitrificans DSM
           20603]
          Length = 352

 Score =  344 bits (883), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 167/332 (50%), Positives = 226/332 (68%), Gaps = 1/332 (0%)

Query: 3   DREGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           D + L+S      E A  + LRPRTL EF GQ      LK+ ++AAK R  + DHVL  G
Sbjct: 14  DSQRLVSNGADDLERAAEAALRPRTLTEFVGQPIVREQLKLVLDAAKGRGASPDHVLLSG 73

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A ELGV+ R TSGP I  AGDLAA+L++L++ +VLFIDEIHRL+   
Sbjct: 74  PPGLGKTTLAMIIAAELGVSLRVTSGPAIQHAGDLAAVLSSLDEGEVLFIDEIHRLARPA 133

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMEDF++D++VG+G  A ++ ++L RFT + ATTR GLL  PL+DRFG    L+
Sbjct: 134 EELLYVAMEDFRVDVVVGKGAGASAIPLSLPRFTAVGATTRAGLLPAPLRDRFGFTGHLD 193

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY+  DL+ +V R A L G+ ++ +AA EIA RSRGTPRIA RLLRRVRD+A+V     +
Sbjct: 194 FYDATDLERVVHRSAHLLGVELSPQAAQEIATRSRGTPRIANRLLRRVRDWAQVKGTGVL 253

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
               A AAL    +D +G D+LD   LT +   FGGGPVG+ T++  + E  + +E + E
Sbjct: 254 DLSAAQAALTVYEVDALGLDRLDRAVLTALCTRFGGGPVGLSTLAVTVGEEPETVETVAE 313

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           P+++++G + RTPRGR+  P  WQHLG+  P 
Sbjct: 314 PFLVREGLMGRTPRGRIATPATWQHLGLTPPQ 345


>gi|15644476|ref|NP_229528.1| Holliday junction DNA helicase RuvB [Thermotoga maritima MSB8]
 gi|2498878|sp|Q56313|RUVB_THEMA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|15825804|pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
           Migration Motor
 gi|4982307|gb|AAD36795.1|AE001812_5 Holliday junction DNA helicase [Thermotoga maritima MSB8]
 gi|1063668|gb|AAB03727.1| RuvB protein [Thermotoga maritima]
          Length = 334

 Score =  344 bits (883), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 162/328 (49%), Positives = 223/328 (67%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
             L+   +  D+ +  LRP++L+EF GQ      L + +EAAK R E LDHVL  GPPGL
Sbjct: 3   EFLTPERTVYDSGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGL 62

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLA ++A EL  N   TSGPV+ K GD+AA+LT+LE  DVLFIDEIHRL+  VEE+L
Sbjct: 63  GKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNKAVEELL 122

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           Y A+EDFQ+D+M+G+GPSA+S++I++  FTL+ ATTR GLL++PL+ RFGI + L+FY +
Sbjct: 123 YSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTV 182

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           ++LK I++R A L  + + D AA  IA RSRGTPRIA RL +RVRD   V  A  I  +I
Sbjct: 183 KELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDI 242

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
               +  L ID  G D+ D + L  I   + GGPVG+  ++A L    D + ++ EPY++
Sbjct: 243 VLKTMEVLNIDDEGLDEFDRKILKTIIEIYRGGPVGLNALAASLGVEADTLSEVYEPYLL 302

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           Q GF+ RTPRGR++   A++HL  ++P 
Sbjct: 303 QAGFLARTPRGRIVTEKAYKHLKYEVPE 330


>gi|305681162|ref|ZP_07403969.1| Holliday junction DNA helicase RuvB [Corynebacterium matruchotii
           ATCC 14266]
 gi|305659367|gb|EFM48867.1| Holliday junction DNA helicase RuvB [Corynebacterium matruchotii
           ATCC 14266]
          Length = 365

 Score =  344 bits (883), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 160/331 (48%), Positives = 222/331 (67%), Gaps = 1/331 (0%)

Query: 4   REGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           R G ++ +    + DI   LRPR+L EF GQ +    L + +  AK R    DHVL  GP
Sbjct: 30  RRGTINPHALNTETDIETTLRPRSLAEFIGQPKVRDQLNLVLTGAKNRNVTPDHVLLSGP 89

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTT+A ++A E+G + R TSGP + + GDLAA+L+NL + DVLFIDEIHR++   E
Sbjct: 90  PGLGKTTMAMIIAYEMGTSLRMTSGPALERTGDLAAMLSNLMEGDVLFIDEIHRMARPAE 149

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LY AMEDF++D++VG+GP A S+ + L+ FTL+ ATTR G+LT PL+DRFG   ++ F
Sbjct: 150 EMLYMAMEDFRIDVIVGKGPGATSIPLELAPFTLVGATTRSGMLTGPLRDRFGFTAQMEF 209

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y+  DL  +V R AK+ G+ +  +AA EIA RSRGTPRIA RLLRRVRD+A+V     I 
Sbjct: 210 YDTPDLTQVVSRAAKIIGVGIDPDAAVEIASRSRGTPRIANRLLRRVRDYADVHGTGHID 269

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            +   AAL+   +D MG D+LD   LT + +  GGGPVG+ T++  + E    +E++ EP
Sbjct: 270 LQAVRAALIVFDVDAMGLDRLDRAVLTALIKGHGGGPVGVSTLAIAVGEEASTVEEVCEP 329

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           Y+++ G I RT RGR+    AW+HLG++ P 
Sbjct: 330 YLVRAGMITRTGRGRVATAAAWRHLGLEPPE 360


>gi|225021303|ref|ZP_03710495.1| hypothetical protein CORMATOL_01322 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946036|gb|EEG27245.1| hypothetical protein CORMATOL_01322 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 365

 Score =  344 bits (883), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 160/331 (48%), Positives = 222/331 (67%), Gaps = 1/331 (0%)

Query: 4   REGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           R G ++ +    + DI   LRPR+L EF GQ +    L + +  AK R    DHVL  GP
Sbjct: 30  RRGTINPHALNTETDIETTLRPRSLAEFIGQPKVRDQLNLVLTGAKNRNVTPDHVLLSGP 89

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTT+A ++A E+G + R TSGP + + GDLAA+L+NL + DVLFIDEIHR++   E
Sbjct: 90  PGLGKTTMAMIIAYEMGTSLRMTSGPALERTGDLAAMLSNLMEGDVLFIDEIHRMARPAE 149

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LY AMEDF++D++VG+GP A S+ + L+ FTL+ ATTR G+LT PL+DRFG   ++ F
Sbjct: 150 EMLYMAMEDFRIDVIVGKGPGATSIPLELAPFTLVGATTRSGMLTGPLRDRFGFTAQMEF 209

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y+  DL  +V R AK+ G+ +  +AA EIA RSRGTPRIA RLLRRVRD+A+V     I 
Sbjct: 210 YDTPDLTQVVSRAAKIIGVGIDPDAAVEIASRSRGTPRIANRLLRRVRDYADVHGTGHID 269

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            +   AAL+   +D MG D+LD   LT + +  GGGPVG+ T++  + E    +E++ EP
Sbjct: 270 LQAVRAALIVFDVDAMGLDRLDRAVLTALIKGHGGGPVGVSTLAIAVGEEASTVEEVCEP 329

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           Y+++ G I RT RGR+    AW+HLG++ P 
Sbjct: 330 YLVRAGMITRTGRGRVATAAAWRHLGLEPPE 360


>gi|222099902|ref|YP_002534470.1| Holliday junction ATP-dependent DNA helicase ruvB [Thermotoga
           neapolitana DSM 4359]
 gi|221572292|gb|ACM23104.1| Holliday junction ATP-dependent DNA helicase ruvB [Thermotoga
           neapolitana DSM 4359]
          Length = 358

 Score =  344 bits (883), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 163/327 (49%), Positives = 224/327 (68%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
            LS   +  D+ +  LRP++L+EF GQ +    L + ++AAK R E LDH+L  GPPGLG
Sbjct: 28  FLSPERTVYDSGVQFLRPKSLDEFIGQEKVKRKLSLALKAAKMRGEILDHILLAGPPGLG 87

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTTLA ++A E+  N   TSGPV+AK GD+AA+LT+LE  DVLFIDEIHRL+  VEE+LY
Sbjct: 88  KTTLAHIIASEMQTNIHITSGPVLAKQGDMAAILTSLERGDVLFIDEIHRLNKAVEEVLY 147

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            A+EDFQ+D+M+G+GPSA+S++I++  FTL+ ATTR GLL++PL+ RFG+ + L+FY  E
Sbjct: 148 SAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGMILELDFYTTE 207

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +LK IV+R A+L  + + +EAA  IA RSRGTPRIA RL +RVRD   V  A  I   I 
Sbjct: 208 ELKEIVKRAARLMDVEIEEEAAEMIAKRSRGTPRIAIRLTKRVRDMLTVEGADRIDIRIV 267

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
              +  L ID+ G D+ D + L  I   + GGPVG+  ++A L    D + ++ EPY++Q
Sbjct: 268 QKTMEILNIDEEGLDEFDRKILKTIIEVYRGGPVGLNALAASLGVEADTLSEVYEPYLLQ 327

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            GFI RTPRGR+    A++HL  + P 
Sbjct: 328 SGFIARTPRGRIATKKAYEHLKYEFPE 354


>gi|302338527|ref|YP_003803733.1| Holliday junction DNA helicase RuvB [Spirochaeta smaragdinae DSM
           11293]
 gi|301635712|gb|ADK81139.1| Holliday junction DNA helicase RuvB [Spirochaeta smaragdinae DSM
           11293]
          Length = 348

 Score =  344 bits (883), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 164/333 (49%), Positives = 220/333 (66%), Gaps = 2/333 (0%)

Query: 1   MMD--REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M D   +  L     +EDA    LRP+ L+EF GQ     NL VFI AAK R E+LDHV 
Sbjct: 1   MSDNNSDSFLEAEYREEDALEGRLRPQRLKEFQGQRALKENLSVFISAAKERQESLDHVF 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA ++A E+G  F+ TS P + K  DLA +LT L + +V FIDE+HRL 
Sbjct: 61  LSGPPGLGKTTLAGILANEMGAEFKVTSAPALEKPKDLAGILTTLGEGNVFFIDEVHRLK 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
             +EE+LY AMED+++D +VG+GP+AR+++I L  FTLI ATT+ G +T PL  RFGI +
Sbjct: 121 PALEEMLYIAMEDYEIDWIVGQGPAARTIRIPLPPFTLIGATTKAGQVTGPLFSRFGITV 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           R++FY   DLK I+ R A +  +++ D+A   IA  SRGTPR+A RLLRR+RDFA++   
Sbjct: 181 RMDFYTEADLKAIIARSASILSVSIGDDAVAAIAQCSRGTPRVANRLLRRMRDFAQILGN 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
            +I   I    L RL ID  G ++ D   L  I   + GGPVG ET++  + E  +++ED
Sbjct: 241 GSIDAGIVSEGLKRLEIDHFGLEKHDREILRTIIEQYDGGPVGAETLAISVGEAVESLED 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
             EP++IQ+GF+QRTPRGR   P+A+QHLGID 
Sbjct: 301 FYEPFLIQRGFLQRTPRGRTATPLAYQHLGIDP 333


>gi|68536131|ref|YP_250836.1| Holliday junction DNA helicase B [Corynebacterium jeikeium K411]
 gi|260578826|ref|ZP_05846733.1| Holliday junction DNA helicase RuvB [Corynebacterium jeikeium ATCC
           43734]
 gi|97190006|sp|Q4JVD9|RUVB_CORJK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|68263730|emb|CAI37218.1| holliday junction DNA helicase [Corynebacterium jeikeium K411]
 gi|258603124|gb|EEW16394.1| Holliday junction DNA helicase RuvB [Corynebacterium jeikeium ATCC
           43734]
          Length = 354

 Score =  344 bits (883), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 160/329 (48%), Positives = 229/329 (69%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           E L  +  + +    + LRP++L+EF GQ +  + L + +  A++R  A DHVL  GPPG
Sbjct: 21  EDLNPQQTAGDSDIDTSLRPKSLDEFIGQPKVRTQLDLVLGGARSRGVAPDHVLLAGPPG 80

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTT+A ++A+ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++   EE+
Sbjct: 81  LGKTTMAMIIAQELGSSLRMTSGPALERAGDLAAMLSNLMEGDVLFIDEIHRMARPAEEM 140

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LY AMEDF++D++VG+GP A S+ I ++ FTL+ ATTR G+LT PL+DRFG   ++ FY+
Sbjct: 141 LYMAMEDFRIDVIVGKGPGATSIPIEIAPFTLVGATTRAGMLTGPLRDRFGFTAQMEFYD 200

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
             DL  +V R A + G+ +T +AA EIA RSRGTPRIA RLLRRVRDFA+V     IT E
Sbjct: 201 TADLTRVVTRAAGILGVDITGDAAAEIASRSRGTPRIANRLLRRVRDFADVNADGKITVE 260

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +A AALL   +D+ G D+LD   +  + +  GGGPVG+ T++  + E    +E++ EPY+
Sbjct: 261 VARAALLVFDVDESGLDRLDRAVIEALVKGHGGGPVGVNTLALAVGEEPSTVEEVCEPYL 320

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           ++ G + RTPRGR+    AW+H+G++ P 
Sbjct: 321 VRAGMVSRTPRGRVATAAAWRHIGLEPPE 349


>gi|254424230|ref|ZP_05037948.1| Holliday junction DNA helicase RuvB [Synechococcus sp. PCC 7335]
 gi|196191719|gb|EDX86683.1| Holliday junction DNA helicase RuvB [Synechococcus sp. PCC 7335]
          Length = 399

 Score =  344 bits (883), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 155/316 (49%), Positives = 214/316 (67%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +   +RP  + ++ GQ      L + I+AAK+R E LDH+L  GPPGLGKTT+A ++A+E
Sbjct: 64  NEEGIRPGAISDYIGQKALKEVLSIAIQAAKSRQEPLDHLLLYGPPGLGKTTMALILAQE 123

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           + V+ + T+ P + +  D+A LL NL+  DVLFIDEIHRLS + EEILYPAMED +LD+ 
Sbjct: 124 MEVDCKITTAPALERPRDIAGLLVNLKAGDVLFIDEIHRLSRVTEEILYPAMEDARLDIT 183

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
           +G+G SAR+  I L  FTL+ ATTRVG L +PL+DRFG+  RL FYE+++L  IV R A 
Sbjct: 184 IGKGQSARTRSIPLQPFTLVGATTRVGALASPLRDRFGLVQRLRFYEVDELTQIVLRTAD 243

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257
           +    V  + A EIA R+RGTPRIA RLL+RVRD+ +V     I ++ A  AL    +D 
Sbjct: 244 VLKTQVLADGAQEIARRARGTPRIANRLLKRVRDYVQVKQLGPINQQTAAEALELFNVDP 303

Query: 258 MGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317
            G D  D R LT++  NF GGPVG++T++A   E    IE++ EPY++Q G++QRTPRGR
Sbjct: 304 CGLDWTDRRLLTLMIENFNGGPVGLDTMAASTGEDPQTIEEVYEPYLLQIGYLQRTPRGR 363

Query: 318 LLMPIAWQHLGIDIPH 333
           ++   A +HLG  +PH
Sbjct: 364 VVTSAACKHLGYQVPH 379


>gi|311739556|ref|ZP_07713391.1| crossover junction ATP-dependent DNA helicase RuvB [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311305372|gb|EFQ81440.1| crossover junction ATP-dependent DNA helicase RuvB [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 359

 Score =  344 bits (883), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 154/331 (46%), Positives = 217/331 (65%), Gaps = 1/331 (0%)

Query: 4   REGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           R   +      E+ DI   LRP++LEEF GQ +    L + ++ AK R    DHVL  GP
Sbjct: 23  RNSDVDATAHSEEHDIERSLRPKSLEEFIGQPKVREQLSLVLKGAKNRGVTPDHVLLSGP 82

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTT+A ++++ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++   E
Sbjct: 83  PGLGKTTMAMIISQELGTSLRMTSGPALERAGDLAAMLSNLMEGDVLFIDEIHRIARPAE 142

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LY AMEDF++D++VG+GP A S+ + +  FTL+ ATTR G+LT PL+DRFG   ++ +
Sbjct: 143 EMLYMAMEDFRIDVIVGKGPGATSIPLEIPPFTLVGATTRAGMLTGPLRDRFGFTAQMEY 202

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y+  DL  +++R A +  + +  +AA EI  RSRGTPRIA RLLRRVRD+AEV     I 
Sbjct: 203 YDTADLTQVIKRAAHILDVEIDHDAAVEIGSRSRGTPRIANRLLRRVRDYAEVNGTGLID 262

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
              A  AL    +D MG D+LD   L  + +  GGGPVG+ T++  + E    +E++ EP
Sbjct: 263 LSAAQGALEVFDVDDMGLDRLDRAVLNALIKGHGGGPVGVSTLAIAVGEEPSTVEEVCEP 322

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           Y+++ G + RT RGR+    AW+HLG+  P 
Sbjct: 323 YLVRAGMVARTGRGRVATAAAWRHLGLTPPE 353


>gi|256375825|ref|YP_003099485.1| Holliday junction DNA helicase RuvB [Actinosynnema mirum DSM 43827]
 gi|255920128|gb|ACU35639.1| Holliday junction DNA helicase RuvB [Actinosynnema mirum DSM 43827]
          Length = 368

 Score =  344 bits (882), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 161/319 (50%), Positives = 221/319 (69%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E    + LRP+ L EF GQ +    L++ +  A  R    DHVL  GPPGLGKT+LA ++
Sbjct: 42  ERDLETTLRPKDLREFVGQPKVREQLELVLHGAMRRGAPPDHVLLSGPPGLGKTSLAMII 101

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++   EE+LY AMEDF++
Sbjct: 102 AAELGASLRITSGPALERAGDLAAMLSNLVEGDVLFIDEIHRMARPAEEMLYLAMEDFRV 161

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D++VG+GP A S+ ++++ FTL+ ATTR G LT PL+DRFG    + FY  E+L  IV+R
Sbjct: 162 DVVVGKGPGATSIPLDIAPFTLVGATTRSGALTGPLRDRFGFTGHMEFYTPEELDLIVRR 221

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A + G+ + +E A EIA RSRGTPRIA RLLRRVRDFAEV     +T E+A AAL    
Sbjct: 222 SAVILGVDLREEGAVEIAGRSRGTPRIANRLLRRVRDFAEVRADGAVTLEVARAALAVYD 281

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D++G D+LD   L  + R+FGGGPVG+ T++  + E    +E++ EPY+++ G + RTP
Sbjct: 282 VDELGLDRLDRAVLGALVRSFGGGPVGVSTLAVAVGEEPTTVEEVCEPYLVRAGMLARTP 341

Query: 315 RGRLLMPIAWQHLGIDIPH 333
           RGR+   +AWQHLG++ P 
Sbjct: 342 RGRVATALAWQHLGLEPPD 360


>gi|116490642|ref|YP_810186.1| Holliday junction DNA helicase B [Oenococcus oeni PSU-1]
 gi|290890056|ref|ZP_06553139.1| hypothetical protein AWRIB429_0529 [Oenococcus oeni AWRIB429]
 gi|122277174|sp|Q04GA1|RUVB_OENOB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|116091367|gb|ABJ56521.1| Holliday junction DNA helicase subunit RuvB [Oenococcus oeni PSU-1]
 gi|290480247|gb|EFD88888.1| hypothetical protein AWRIB429_0529 [Oenococcus oeni AWRIB429]
          Length = 338

 Score =  344 bits (882), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 165/333 (49%), Positives = 222/333 (66%), Gaps = 2/333 (0%)

Query: 1   MMDREG-LLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M D +  +L      ++ D  L LRP+ L E+ GQ E    L V+++AAK R EALDHVL
Sbjct: 1   MNDEDQKILDAKPIADEIDSELTLRPKYLREYIGQKEIKDQLSVYLKAAKQRDEALDHVL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTLA V+A E+G   ++TSGP I K GDL ALL  L   D+LFIDEIHRL 
Sbjct: 61  LFGPPGLGKTTLAIVIANEMGAKIKTTSGPAIEKTGDLVALLNELTAGDILFIDEIHRLP 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
             VEE+LY AMEDF +D++VG+G +A ++   L  FTLI ATTR G+L+ PL+DRFGI  
Sbjct: 121 KSVEEVLYSAMEDFYVDIVVGQGETAHAIHFPLPPFTLIGATTRAGMLSAPLRDRFGIVA 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
            + FY + DLK I +R A++   ++    A E+A+RSRGTPRI  RLL+RVRDFA+VA  
Sbjct: 181 HMQFYPVSDLKLIAKRTAEIFDTSIAGSGAAELALRSRGTPRIVNRLLKRVRDFAQVAGK 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
            TI  +I D AL +L +D  G D+ DL+YL  +   + GGP G+  +++ + E  + +E+
Sbjct: 241 DTIDEQIVDNALNKLHVDARGLDETDLKYLNTLIHQYKGGPAGVNALASNIGEDSETVEE 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           ++EPY++Q GFIQRTPRGR     A++HL I  
Sbjct: 301 MVEPYLLQIGFIQRTPRGRQATQAAYEHLQIPY 333


>gi|332799128|ref|YP_004460627.1| Holliday junction ATP-dependent DNA helicase ruvB
           [Tepidanaerobacter sp. Re1]
 gi|332696863|gb|AEE91320.1| Holliday junction ATP-dependent DNA helicase ruvB
           [Tepidanaerobacter sp. Re1]
          Length = 332

 Score =  344 bits (882), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 181/329 (55%), Positives = 236/329 (71%), Gaps = 3/329 (0%)

Query: 2   MDREGLLSRNVSQEDADI--SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           MD + +++  +  ++       +RP +  E+ GQ     NL+VFI+AA  R EALDHVL 
Sbjct: 1   MD-DRIVTPALKNDEELEYEKNIRPLSFNEYVGQDRVKENLQVFIKAALMRREALDHVLL 59

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++ARELGVN R TSGP I +AGDLAA+LTNL +RD+LFIDEIHRL  
Sbjct: 60  FGPPGLGKTTLAYIIARELGVNIRITSGPAIERAGDLAAILTNLGNRDLLFIDEIHRLHP 119

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEEILYPAMEDF LD+MVG+GPSARS+++NLS FTL+ ATT+ G LT+PL+DRFG+ + 
Sbjct: 120 SVEEILYPAMEDFALDIMVGKGPSARSMRLNLSPFTLVGATTKAGRLTSPLRDRFGMSLH 179

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L+FY+I DL TI++R A L  + +  +AA  IA+ SRGTPR+A RLL+R+RDFA+V    
Sbjct: 180 LDFYKISDLVTIIKRSAALLKVDIEQKAAERIALCSRGTPRLANRLLKRIRDFAQVRGDG 239

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT +I +  L  L ID  G DQ D R L  +   F GGPVGIE+I+A L+E    IED+
Sbjct: 240 VITMDITEEGLRLLEIDSHGLDQNDRRLLLTVIDKFDGGPVGIESIAAALNEDVSTIEDI 299

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
            EPY+IQ+G++ RT RGR++   A+ HL 
Sbjct: 300 YEPYLIQEGYMFRTARGRIVSDKAYDHLD 328


>gi|154508893|ref|ZP_02044535.1| hypothetical protein ACTODO_01404 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798527|gb|EDN80947.1| hypothetical protein ACTODO_01404 [Actinomyces odontolyticus ATCC
           17982]
          Length = 352

 Score =  344 bits (882), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 162/331 (48%), Positives = 221/331 (66%), Gaps = 1/331 (0%)

Query: 3   DREGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           D   +++ +  + E A  + LRP+ L EF GQ      L++ ++AA+ R+ + DHVL  G
Sbjct: 14  DAMRIVAPDAGELERAAEAALRPKKLSEFVGQRVVRGQLQLVLDAARMRSASPDHVLLAG 73

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+G + R TSGP I  AGDLAA+L+ L++ DVLFIDEIHRL+   
Sbjct: 74  PPGLGKTTLAMIIAAEMGTSLRLTSGPAIQHAGDLAAILSGLQEGDVLFIDEIHRLARTA 133

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMEDF++D++VG+GP A S+ + L  FT++ ATTR GLL  PL+DRFG    L 
Sbjct: 134 EEMLYLAMEDFRVDVVVGKGPGATSIPLTLPPFTVVGATTRSGLLPAPLRDRFGFTAHLE 193

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FYE ++L+++V R A L G  +  +AA EIA RSRGTPRIA RLLRRV D+A+V     +
Sbjct: 194 FYETDELQSVVTRSASLLGSPIDAQAAHEIASRSRGTPRIANRLLRRVVDYAQVHGDGQL 253

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T E A  AL    +D  G D+LD   L  I R F GGPVG+ T+S  + E  + +E + E
Sbjct: 254 TLEAARGALELFEVDPSGLDRLDRAVLEAICRRFAGGPVGLTTLSVTIGEEAETVETVAE 313

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           PY++++GF+ RT RGR+    AW HLG+  P
Sbjct: 314 PYLVREGFLVRTNRGRMATAKAWAHLGLTPP 344


>gi|261749237|ref|YP_003256922.1| Holliday junction DNA helicase RuvB [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
 gi|261497329|gb|ACX83779.1| Holliday junction DNA helicase RuvB [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
          Length = 321

 Score =  344 bits (882), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 173/313 (55%), Positives = 221/313 (70%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           L P+  ++F GQ +   NLK+FI+AAK R E+LDH+LF GPPGLGKTTLA +VA ELGV 
Sbjct: 9   LNPKKFQDFVGQQDILDNLKIFIQAAKKRKESLDHILFHGPPGLGKTTLAHIVANELGVK 68

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
              TSG V+ K GDLA LL +L   DVLFIDEIHRLS IVEE LY AME++++D+++  G
Sbjct: 69  ITVTSGSVLDKPGDLAGLLIHLNSNDVLFIDEIHRLSPIVEEYLYSAMENYKIDIIIDSG 128

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            +ARSV+I+LS FTLI ATTR GLLT P++ RFGI  RL +Y  E LK IV R AK   +
Sbjct: 129 SNARSVQIDLSPFTLIGATTRSGLLTAPMRSRFGINGRLTYYRKELLKNIVTRRAKTLNI 188

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T+EA+ EIA RSRGTPRIA  LLRRVRDFA++    TI   I D  L  L +DK G D
Sbjct: 189 PITEEASYEIANRSRGTPRIANALLRRVRDFAQIKGNGTIDIHICDLGLQALNVDKHGLD 248

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           ++D R L  I  +F GGPVGI TI+  ++E  D IE++ EP++IQ+G++ RTPRGR    
Sbjct: 249 EMDNRILASIIDHFKGGPVGINTIATAVNENPDTIEEVYEPFLIQEGYLVRTPRGRKATL 308

Query: 322 IAWQHLGIDIPHR 334
           +A++HL  +   R
Sbjct: 309 LAYKHLKRNFEKR 321


>gi|257457429|ref|ZP_05622599.1| holliday junction DNA helicase RuvB [Treponema vincentii ATCC
           35580]
 gi|257445158|gb|EEV20231.1| holliday junction DNA helicase RuvB [Treponema vincentii ATCC
           35580]
          Length = 350

 Score =  344 bits (882), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 160/331 (48%), Positives = 219/331 (66%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           +D  G++       D     LRP+ L +F GQ     NL VFI+AA++R E+LDH+  +G
Sbjct: 7   IDEFGIVRGERHAGDEKDRALRPQLLRDFQGQQNIKENLSVFIQAARSRGESLDHLFLIG 66

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLAQ+ A+ELGV  + T  P + K  DLA +LT L +R V FIDEIHRL   +
Sbjct: 67  PPGLGKTTLAQITAQELGVECKITGAPALDKPKDLAGILTTLSERSVFFIDEIHRLKPAI 126

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMED++LD ++G+GP AR+V+I L  FTLI ATTR G++++PL  RFGI  R  
Sbjct: 127 EEMLYIAMEDYELDWIIGQGPGARTVRIPLPPFTLIGATTRAGMVSSPLISRFGIVQRFE 186

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY  E+L +I+ R A +  + +  +AA  +A  SRGTPR+A RLLRR+RDFA +  + T+
Sbjct: 187 FYSDEELASIIMRSADILKINIEKKAAIALARCSRGTPRVANRLLRRMRDFAFIEGSDTV 246

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
                   L RL ID++G +  D + L  I  N+GGGPVG ET++  + E +D +ED  E
Sbjct: 247 REVTVAQGLERLHIDRLGLENYDRQILRSIIENYGGGPVGAETLAISIGESQDTLEDYYE 306

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           PY+IQ G +QRTPRGR++   A+ HLG+ IP
Sbjct: 307 PYLIQTGLLQRTPRGRMVTEKAYAHLGLKIP 337


>gi|196233359|ref|ZP_03132203.1| Holliday junction DNA helicase RuvB [Chthoniobacter flavus
           Ellin428]
 gi|196222499|gb|EDY17025.1| Holliday junction DNA helicase RuvB [Chthoniobacter flavus
           Ellin428]
          Length = 339

 Score =  344 bits (882), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 170/333 (51%), Positives = 231/333 (69%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M  + +     + + A    LRP    EF GQ + C  L++ ++AA+ R + L+H+L  G
Sbjct: 1   MPDDFISKTLDAPKTAFDISLRPPMFSEFAGQDKVCQRLELMVQAAQQRGDVLEHILLSG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A  +GVN ++TSGP I KAGDLA LLT LE  DVLFIDEIHRL   +
Sbjct: 61  PPGLGKTTLAYILAHAMGVNIKNTSGPTIEKAGDLAGLLTTLERGDVLFIDEIHRLQPAI 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE LYPAMED++LD+++ +GP+ARS+ +NL RFTLI ATTR G+L+ PL+ RFG+  RL+
Sbjct: 121 EEYLYPAMEDYKLDIIIDQGPNARSIPLNLPRFTLIGATTRAGMLSAPLRTRFGMTCRLD 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y  E+L+ IV R A L GL + D  A EIA RSRGTPRIA  LLR VRDFA+V     +
Sbjct: 181 YYTAEELQKIVLRSAGLIGLDIDDPGALEIAARSRGTPRIANNLLRWVRDFAQVRAGNRV 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           TR++AD AL  L ID+ GFD++D R L  +   F GGPVGI +++  + +    +ED+ E
Sbjct: 241 TRDVADKALEMLDIDRDGFDEMDKRILEALVHKFNGGPVGINSLAVAIGDDPGTLEDVHE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           PY+I QG+I+RTP+GR+ +P+ ++ LGI  P R
Sbjct: 301 PYLIMQGYIKRTPQGRVALPLCYRKLGISAPRR 333


>gi|258405865|ref|YP_003198607.1| Holliday junction DNA helicase RuvB [Desulfohalobium retbaense DSM
           5692]
 gi|257798092|gb|ACV69029.1| Holliday junction DNA helicase RuvB [Desulfohalobium retbaense DSM
           5692]
          Length = 322

 Score =  343 bits (881), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 173/313 (55%), Positives = 234/313 (74%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP  ++EF GQ +  +NL+VF+++A+ R +A+DH L  G PGLGKTTLAQ++A 
Sbjct: 8   PLDEGVRPSRMDEFIGQDDLRANLQVFLQSARGRGKAMDHTLLFGQPGLGKTTLAQIIAT 67

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           E+GVN  STSGPV+ ++GDLAA+LTNL+  DVLF+DEIHR+   VEE+LYPA+EDF+LDL
Sbjct: 68  EMGVNLVSTSGPVMERSGDLAAILTNLQRYDVLFVDEIHRMPASVEEVLYPALEDFKLDL 127

Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA 196
           +VG+GP AR+VKI+L  FTL+ ATTR+GLL++PL+DRFG+  RL +Y  EDL  IVQR A
Sbjct: 128 VVGQGPGARTVKIDLEPFTLVGATTRMGLLSSPLRDRFGVMCRLEYYTSEDLARIVQRSA 187

Query: 197 KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAID 256
           ++  +A++ + A EI  RSRGTPRIA RLLRRVRDFA V  A+ I  E A AAL RL +D
Sbjct: 188 QIQAIAISPDGALEIGRRSRGTPRIANRLLRRVRDFAMVQGAEHIGTEEAAAALERLDVD 247

Query: 257 KMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRG 316
           ++G D +D + L  +   FGGGPVG++T++    E    +ED+ EPY+IQ GF++RTPRG
Sbjct: 248 QLGLDMMDRKILQAMVEKFGGGPVGVKTLAVACCEEVRTLEDIYEPYLIQSGFLKRTPRG 307

Query: 317 RLLMPIAWQHLGI 329
           R+L   A++HL I
Sbjct: 308 RVLTAKAYEHLKI 320


>gi|302866773|ref|YP_003835410.1| Holliday junction DNA helicase RuvB [Micromonospora aurantiaca ATCC
           27029]
 gi|315503188|ref|YP_004082075.1| holliday junction DNA helicase ruvb [Micromonospora sp. L5]
 gi|302569632|gb|ADL45834.1| Holliday junction DNA helicase RuvB [Micromonospora aurantiaca ATCC
           27029]
 gi|315409807|gb|ADU07924.1| Holliday junction DNA helicase RuvB [Micromonospora sp. L5]
          Length = 354

 Score =  343 bits (881), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 160/333 (48%), Positives = 223/333 (66%), Gaps = 1/333 (0%)

Query: 2   MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M  E L+S  V+  + D    +RP+ L+EF  Q      L + ++ A  R    DH+L  
Sbjct: 1   MSGENLVSAYVNDAELDAEASVRPKRLDEFIAQHRVRDQLDLLLQGAMRRGSPPDHILLS 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA +VA ELG   R TSGP I ++GDLAA+LT L + DVLFIDEIHR++  
Sbjct: 61  GPPGLGKTTLANIVAAELGTGIRVTSGPAIERSGDLAAILTGLAEGDVLFIDEIHRIAKP 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            EE+LY AMEDF++D++VG+GP A ++ +++  FTL+ ATTR GLLT P++DRFG    L
Sbjct: 121 AEELLYSAMEDFRVDVVVGKGPGATAIPLDVEPFTLVGATTRSGLLTGPMRDRFGFVAHL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           +FY   DL+T++ R A++ G+ +T + A E+A RSRGTPRIA RLLRRVRD+AEV     
Sbjct: 181 DFYAPADLETLLHRSARILGVPITADGAAEVAGRSRGTPRIANRLLRRVRDYAEVRADGV 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +T E A AAL    +D +G D+LD   LT +  +F GGPVG+ T++  + E  D +E++ 
Sbjct: 241 VTLETARAALTVYDVDALGLDRLDRAVLTALVDSFRGGPVGLSTLAVAVGEQPDTVEEVC 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EP++++ G + RTPRGR+    AW+HLG   P+
Sbjct: 301 EPFLVRAGLLARTPRGRVATEAAWRHLGRTPPN 333


>gi|172035419|ref|YP_001801920.1| Holliday junction DNA helicase RuvB [Cyanothece sp. ATCC 51142]
 gi|226698774|sp|B1WP72|RUVB_CYAA5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|171696873|gb|ACB49854.1| Holliday junction DNA helicase [Cyanothece sp. ATCC 51142]
          Length = 354

 Score =  343 bits (881), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 154/326 (47%), Positives = 220/326 (67%), Gaps = 1/326 (0%)

Query: 4   REGLLSRNVSQE-DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           +E L      QE D     +RP + +E+ GQ +    L + IEAAK R E +DH+L  GP
Sbjct: 16  KERLTKAETHQEQDNLEESIRPHSFDEYIGQKDLKDVLSIVIEAAKTRNEPMDHLLLYGP 75

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTT++ ++A  +GVN + T+ P + +  D+  LL +L+  D+LFIDEIHRL+ + E
Sbjct: 76  PGLGKTTISLILASAMGVNCKITAAPALERPRDITGLLVSLKPGDILFIDEIHRLNRLTE 135

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMED++L++ +G+G +AR+  I L +FTL+ ATT+VG LT+PL+DRFG+  RL F
Sbjct: 136 ELLYPAMEDYRLEITIGKGQAARTRSIPLPKFTLVGATTKVGSLTSPLRDRFGLIQRLKF 195

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           YE E+L  I++R AKL   ++T++ A EI  RSRGTPRIA RLLRRVRD+ +V    +IT
Sbjct: 196 YEPEELALIIKRTAKLLNTSITEQGAAEIGRRSRGTPRIANRLLRRVRDYIQVKKFDSIT 255

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           +E+A  AL    +D  G D  D   L  +   F GGPVG+E ++A   E    IE++ EP
Sbjct: 256 QELAAEALDIYQVDPQGLDWTDRLILDTMITQFNGGPVGLEAVAAATGEDAKTIEEVYEP 315

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLG 328
           Y++Q G++ RTPRGR++  +A+QHLG
Sbjct: 316 YLLQIGYLNRTPRGRVVTTVAYQHLG 341


>gi|225851290|ref|YP_002731524.1| holliday junction DNA helicase RuvB [Persephonella marina EX-H1]
 gi|225646422|gb|ACO04608.1| holliday junction DNA helicase RuvB [Persephonella marina EX-H1]
          Length = 321

 Score =  343 bits (881), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 161/313 (51%), Positives = 224/313 (71%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
            + +E++    LRP++++++ GQ E    +K+F++A+K   + LDH+L  GPPGLGKT+L
Sbjct: 2   EILREESFDIDLRPKSIDDYIGQDEVKKQIKIFVDASKKTGKTLDHILIGGPPGLGKTSL 61

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           AQV+ARELG N   TSGPV+ K GD+A +L++LE+ D+LFIDEIHRL+  VEE LYPAME
Sbjct: 62  AQVIARELGKNIVFTSGPVLEKKGDIAGILSSLEEGDILFIDEIHRLNPSVEEALYPAME 121

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           DF LD+++G+G S+RSV+I++  FTLI ATTR G+LT+PL  RFGI + +++Y+ + L  
Sbjct: 122 DFCLDIIIGKGSSSRSVRIDIPPFTLIGATTRSGMLTSPLISRFGIILHIDYYDTDSLTR 181

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           IV R AK+ G+ +T+  A EIA RSRGTPRIA R L+RV DFA V    T+T + A  AL
Sbjct: 182 IVLRSAKILGIKITENGAREIARRSRGTPRIANRFLKRVYDFAVVKKDGTVTEDTAREAL 241

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
             L ID  G D  D +YL +I   F G PVG+ T+S+ LSE R  IE++IEP++++ GFI
Sbjct: 242 DFLGIDSYGLDSRDRKYLQIIIEKFNGKPVGLNTLSSALSEDRYTIEEIIEPFLLRSGFI 301

Query: 311 QRTPRGRLLMPIA 323
           +RTP+GR     A
Sbjct: 302 ERTPKGRKPTDKA 314


>gi|42523917|ref|NP_969297.1| Holliday junction DNA helicase B [Bdellovibrio bacteriovorus HD100]
 gi|47606082|sp|P61529|RUVB_BDEBA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|39576124|emb|CAE80290.1| Holliday junction DNA helicase RuvB [Bdellovibrio bacteriovorus
           HD100]
          Length = 329

 Score =  343 bits (881), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 162/312 (51%), Positives = 223/312 (71%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           V  E +  + LRP+  E+F GQ +    LKVF+ AAK R E+LDHVL  GPPGLGKTTL+
Sbjct: 10  VEGEKSWENELRPQKFEDFPGQDDVKEKLKVFVAAAKHRGESLDHVLLCGPPGLGKTTLS 69

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
           +++A ++G   + TS P I K GDLAA+LT+L+   VLFIDEIHRLS  VEE LY AMED
Sbjct: 70  KIIANDMGAEIKMTSAPAIDKKGDLAAILTSLKPHSVLFIDEIHRLSRHVEEYLYTAMED 129

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + +D++ GEG  ARS+K  L+ FTL+ ATTR GLL  P +DRFGI  RL FY+ + L+ I
Sbjct: 130 YYIDIVTGEGLGARSMKFTLAPFTLVGATTRAGLLNPPFRDRFGIVERLQFYDKDALRQI 189

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           + R A++  + + +E A E+A RSRGTPR+A RLL+RVRD+A+V     ++++IA  AL 
Sbjct: 190 LMRSAEILKVEIDEEGAEEVARRSRGTPRVANRLLKRVRDYAQVKGNGVVSKDIAVYALN 249

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
           +L +D+ G D +D R L++I   + GGPVGI+TI+A LSE RD +E++ EP++IQ+GFIQ
Sbjct: 250 QLGVDQYGLDLMDRRILSLIQDKYAGGPVGIDTIAAALSEERDTLEEVYEPFLIQEGFIQ 309

Query: 312 RTPRGRLLMPIA 323
           +T RGR++   A
Sbjct: 310 KTQRGRVITEFA 321


>gi|169629966|ref|YP_001703615.1| Holliday junction DNA helicase RuvB [Mycobacterium abscessus ATCC
           19977]
 gi|169241933|emb|CAM62961.1| Holliday junction DNA helicase RuvB [Mycobacterium abscessus]
          Length = 358

 Score =  343 bits (881), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 155/320 (48%), Positives = 223/320 (69%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E+   + LRP++L EF GQ      L++ +  AK R    DH+L  GPPGLGKT+LA ++
Sbjct: 30  ENDVDAGLRPKSLREFIGQPRVREQLELVLSGAKNRGGTPDHILLSGPPGLGKTSLAMII 89

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++   EE+LY AMEDF++
Sbjct: 90  AAELGSSLRVTSGPALERAGDLAAMLSNLVEHDVLFIDEIHRIARPAEEMLYLAMEDFRV 149

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D++VG+GP A S+ + ++ FTL+ ATTR G LT PL+DRFG    ++FYE ++L+ ++ R
Sbjct: 150 DIVVGKGPGATSIPLEVAPFTLVGATTRSGSLTGPLRDRFGFTAHMDFYEPDELELVLAR 209

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A + G+ +  +A  EIA RSRGTPRIA RLLRRVRD+AEV     IT ++A +AL    
Sbjct: 210 SAGILGIELGADAGTEIARRSRGTPRIANRLLRRVRDYAEVRADGVITVDVAKSALAVYD 269

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D++G D+LD   L  + R+FGGGPVG+ T++  + E    +E++ EP++++ G + RTP
Sbjct: 270 VDELGLDRLDRAVLLALTRSFGGGPVGLSTLAVAVGEESTTVEEVCEPFLVRAGMLARTP 329

Query: 315 RGRLLMPIAWQHLGIDIPHR 334
           RGR+  P+AW HLG+  P +
Sbjct: 330 RGRVATPLAWTHLGLTPPPQ 349


>gi|295396082|ref|ZP_06806265.1| crossover junction ATP-dependent DNA helicase RuvB [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294971023|gb|EFG46915.1| crossover junction ATP-dependent DNA helicase RuvB [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 356

 Score =  343 bits (881), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 152/332 (45%), Positives = 221/332 (66%), Gaps = 1/332 (0%)

Query: 3   DREGLL-SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           + E L+ S     E A  + LRP+ L EF GQ +    L + ++AAKA     DHVL  G
Sbjct: 19  EEERLMRSGADDAERAQEAALRPKGLAEFVGQKQVREQLSLVLDAAKAGKRTPDHVLLSG 78

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A+E+G + R TSGP +  AGDLAA+L++L++ +VLFIDEIHR++   
Sbjct: 79  PPGLGKTTLAMIIAQEMGSHIRITSGPAVQHAGDLAAILSSLDEGEVLFIDEIHRVARAA 138

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMEDF++D++VG+GP A ++ ++L  FTL+ ATTR GLL  PL+DRFG    L+
Sbjct: 139 EEMLYVAMEDFRVDVIVGKGPGATAIPLDLPPFTLVGATTRSGLLPAPLRDRFGFTGHLD 198

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY  +DL+ +++R A + G+   +    EIA RSRGTPRIA RLLRRVRD+A+V     I
Sbjct: 199 FYTSQDLQRVLERSAGMLGIEADEAGLAEIARRSRGTPRIANRLLRRVRDWAQVRGDGHI 258

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
               + +AL    +D  G D+LD   L+++   F GGPVG+ T++  + E  + +E++ E
Sbjct: 259 DLYASRSALNVYEVDDRGLDRLDRAVLSVLCERFNGGPVGLSTLAVSVGEEPETVEEVAE 318

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           P+++++G + RTPRGR+     WQH+G+  P 
Sbjct: 319 PFLVREGLMTRTPRGRIATQTGWQHIGLTPPD 350


>gi|86607928|ref|YP_476690.1| Holliday junction DNA helicase RuvB [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|97190388|sp|Q2JP68|RUVB_SYNJB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|86556470|gb|ABD01427.1| Holliday junction DNA helicase RuvB [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 378

 Score =  343 bits (881), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 170/328 (51%), Positives = 220/328 (67%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           D   LL       +A    LRPRTL E+ GQ E    L + I AA+AR E LDH+LF GP
Sbjct: 42  DPSALLQPQAHPGEAQEESLRPRTLAEYIGQTELKEVLSIAIAAARARQEPLDHLLFYGP 101

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTT+A V+A E+G  F  T+ P +    D+A  L  L+  DVLFIDEIHRL  + E
Sbjct: 102 PGLGKTTVAAVLAAEMGSQFYMTTAPALESPRDIAGYLVRLKRGDVLFIDEIHRLPKVTE 161

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMEDF+LD+ +G+G SAR   + L RFTLI ATTR+G LT+PL+DRFG   RL F
Sbjct: 162 ELLYPAMEDFRLDITIGKGRSARITSLPLERFTLIGATTRIGALTSPLRDRFGHVQRLRF 221

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           YE  +L  IV R A+L  ++   E A EIA RSRGTPRIA RL +RVRD+A+V     I+
Sbjct: 222 YEPHELVQIVLRTARLLNVSTDPEGAAEIARRSRGTPRIANRLFKRVRDYAQVRGDGHIS 281

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           +E+A AAL    +D MG D +D + LT++   FGGGPVG+ET++A   E    IE++ EP
Sbjct: 282 QEVAAAALELFQVDPMGLDWIDRKLLTVLVEQFGGGPVGLETMAAVTGEDPQTIEEVYEP 341

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           Y++Q G++QRTPRGR++ P A +HLG +
Sbjct: 342 YLLQIGYLQRTPRGRVVTPAALRHLGYE 369


>gi|15825806|pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
          Length = 334

 Score =  343 bits (881), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 161/328 (49%), Positives = 223/328 (67%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
             L+   +  D+ +  LRP++L+EF GQ      L + +EAAK R E LDHVL  GPPGL
Sbjct: 3   EFLTPERTVYDSGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGL 62

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           G+TTLA ++A EL  N   TSGPV+ K GD+AA+LT+LE  DVLFIDEIHRL+  VEE+L
Sbjct: 63  GRTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNKAVEELL 122

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           Y A+EDFQ+D+M+G+GPSA+S++I++  FTL+ ATTR GLL++PL+ RFGI + L+FY +
Sbjct: 123 YSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTV 182

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           ++LK I++R A L  + + D AA  IA RSRGTPRIA RL +RVRD   V  A  I  +I
Sbjct: 183 KELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDI 242

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
               +  L ID  G D+ D + L  I   + GGPVG+  ++A L    D + ++ EPY++
Sbjct: 243 VLKTMEVLNIDDEGLDEFDRKILKTIIEIYRGGPVGLNALAASLGVEADTLSEVYEPYLL 302

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           Q GF+ RTPRGR++   A++HL  ++P 
Sbjct: 303 QAGFLARTPRGRIVTEKAYKHLKYEVPE 330


>gi|86606465|ref|YP_475228.1| Holliday junction DNA helicase RuvB [Synechococcus sp. JA-3-3Ab]
 gi|97189884|sp|Q2JTM7|RUVB1_SYNJA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB 1
 gi|86555007|gb|ABC99965.1| Holliday junction DNA helicase RuvB [Synechococcus sp. JA-3-3Ab]
          Length = 378

 Score =  343 bits (881), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 170/328 (51%), Positives = 220/328 (67%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           D   LL       +A    LRPRTL E+ GQ E    L + I AA+AR E LDH+LF GP
Sbjct: 42  DPSALLQPQAHPGEAQEESLRPRTLAEYIGQTELKEVLSIAIAAARARQEPLDHLLFYGP 101

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTT+A V+A E+G  F  T+ P +    D+A  L  L+  DVLFIDEIHRL  + E
Sbjct: 102 PGLGKTTVAAVLAAEMGSQFYMTTAPALESPRDIAGYLVRLKRGDVLFIDEIHRLPKVTE 161

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMEDF+LD+ +G+G SAR   + L RFTLI ATTR+G LT+PL+DRFG   RL F
Sbjct: 162 ELLYPAMEDFRLDITIGKGRSARITSLPLERFTLIGATTRIGALTSPLRDRFGHVQRLRF 221

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           YE  +L  IV R A+L  ++   E A EIA RSRGTPRIA RL +RVRD+A+V     I+
Sbjct: 222 YEPHELVQIVLRTARLLNVSTDPEGAAEIARRSRGTPRIANRLFKRVRDYAQVRGDGHIS 281

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           +E+A AAL    +D MG D +D + LT++   FGGGPVG+ET++A   E    IE++ EP
Sbjct: 282 QEVAAAALELFQVDPMGLDWIDRKLLTVLVEQFGGGPVGLETMAAVTGEDPQTIEEVYEP 341

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           Y++Q G++QRTPRGR++ P A +HLG +
Sbjct: 342 YLLQIGYLQRTPRGRVVTPAALRHLGYE 369


>gi|328881166|emb|CCA54405.1| Holliday junction DNA helicase RuvB [Streptomyces venezuelae ATCC
           10712]
          Length = 366

 Score =  343 bits (880), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 155/332 (46%), Positives = 221/332 (66%), Gaps = 1/332 (0%)

Query: 3   DREGLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           D   ++  +   +D A  + LRP+ L EF GQ +    L + ++AA+ R    DHVL  G
Sbjct: 14  DEARIVGASAEGDDQAVEAALRPKDLSEFVGQEKVRQQLDLVLKAARQRGATADHVLLSG 73

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
            PGLGKTTL+ ++A E+    R TSGP I  AGDLAA+L++L++ ++LF+DEIHR+S   
Sbjct: 74  APGLGKTTLSMIIAAEMNAPIRITSGPAIQHAGDLAAILSSLQEGEILFLDEIHRMSRPA 133

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMEDF++D++VG+GP A ++ + L  FTL+ ATTR GLL  PL+DRFG    + 
Sbjct: 134 EEMLYMAMEDFRVDVIVGKGPGATAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTGHME 193

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY+  +L+ ++ R A L  + +    A EIA RSRGTPRIA RLLRRVRD+A+V     I
Sbjct: 194 FYDPAELQRVIHRSAGLLDVEIDPAGAAEIAGRSRGTPRIANRLLRRVRDYAQVRADGVI 253

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           TREIA+AAL    +D  G D+LD   L  + + FGGGPVG+ T++  + E R+ +E++ E
Sbjct: 254 TREIAEAALSVYEVDGRGLDRLDRAVLEALLKLFGGGPVGLSTLAVAVGEERETVEEVAE 313

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           P+++++G + RTPRGR+  P AW HLG+  P 
Sbjct: 314 PFLVREGLLARTPRGRVATPAAWAHLGLVPPQ 345


>gi|306785394|ref|ZP_07423716.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis
           SUMu003]
 gi|306789994|ref|ZP_07428316.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis
           SUMu004]
 gi|306794075|ref|ZP_07432377.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis
           SUMu005]
 gi|306798489|ref|ZP_07436791.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis
           SUMu006]
 gi|306804352|ref|ZP_07441020.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis
           SUMu008]
 gi|306807608|ref|ZP_07444276.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis
           SUMu007]
 gi|306969810|ref|ZP_07482471.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis
           SUMu009]
 gi|308329913|gb|EFP18764.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis
           SUMu003]
 gi|308333528|gb|EFP22379.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis
           SUMu004]
 gi|308337555|gb|EFP26406.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis
           SUMu005]
 gi|308341222|gb|EFP30073.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis
           SUMu006]
 gi|308346004|gb|EFP34855.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis
           SUMu007]
 gi|308349029|gb|EFP37880.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis
           SUMu008]
 gi|308352727|gb|EFP41578.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis
           SUMu009]
          Length = 344

 Score =  343 bits (880), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 164/334 (49%), Positives = 231/334 (69%), Gaps = 2/334 (0%)

Query: 1   MMDR-EGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M +R +  +S  ++  + DI   LRPR+L EF GQ      L++ IE AK R    DH+L
Sbjct: 1   MTERSDRNVSPALTVGEGDIDVSLRPRSLREFIGQPRVREQLQLVIEGAKNRGGTPDHIL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKT+LA ++A ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++
Sbjct: 61  LSGPPGLGKTSLAMIIAAELGSSLRVTSGPALERAGDLAAMLSNLVEHDVLFIDEIHRIA 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
              EE+LY AMEDF++D++VG+GP A S+ + ++ FTL+ ATTR G LT PL+DRFG   
Sbjct: 121 RPAEEMLYLAMEDFRVDVVVGKGPGATSIPLEVAPFTLVGATTRSGALTGPLRDRFGFTA 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
            ++FYE  +L+ ++ R A + G+ +  +A  EIA RSRGTPRIA RLLRRVRDFAEV   
Sbjct: 181 HMDFYEPAELERVLARSAGILGIELGADAGAEIARRSRGTPRIANRLLRRVRDFAEVRAD 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             ITR++A AAL    +D++G D+LD   L+ + R+FGGGPVG+ T++  + E    +E+
Sbjct: 241 GVITRDVAKAALEVYDVDELGLDRLDRAVLSALTRSFGGGPVGVSTLAVAVGEEAATVEE 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           + EP++++ G + RTPRGR+   +AW HLG+  P
Sbjct: 301 VCEPFLVRAGMVARTPRGRVATALAWTHLGMTPP 334


>gi|15674280|ref|NP_268453.1| Holliday junction DNA helicase RuvB [Streptococcus pyogenes M1 GAS]
 gi|56808877|ref|ZP_00366587.1| COG2255: Holliday junction resolvasome, helicase subunit
           [Streptococcus pyogenes M49 591]
 gi|71909849|ref|YP_281399.1| Holliday junction DNA helicase RuvB [Streptococcus pyogenes
           MGAS5005]
 gi|94989546|ref|YP_597646.1| Holliday junction DNA helicase RuvB [Streptococcus pyogenes
           MGAS10270]
 gi|139472919|ref|YP_001127634.1| Holliday junction DNA helicase RuvB [Streptococcus pyogenes str.
           Manfredo]
 gi|209558619|ref|YP_002285091.1| Holliday junction DNA helicase RuvB [Streptococcus pyogenes NZ131]
 gi|306828269|ref|ZP_07461528.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           pyogenes ATCC 10782]
 gi|20140203|sp|Q9A1Y1|RUVB_STRP1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|68715288|sp|Q5XEE4|RUVB_STRP6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|123382465|sp|Q1JJ71|RUVB_STRPD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|166231560|sp|A2RC05|RUVB_STRPG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|172046748|sp|Q1J924|RUVB_STRPF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|226698786|sp|B5XJ28|RUVB_STRPZ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|13621359|gb|AAK33175.1| putative Holliday junction DNA helicase, subunit B [Streptococcus
           pyogenes M1 GAS]
 gi|71852631|gb|AAZ50654.1| holliday junction DNA helicase [Streptococcus pyogenes MGAS5005]
 gi|94543054|gb|ABF33102.1| Holliday junction DNA helicase ruvB [Streptococcus pyogenes
           MGAS10270]
 gi|134271165|emb|CAM29377.1| Holliday junction DNA helicase, subunit B [Streptococcus pyogenes
           str. Manfredo]
 gi|209539820|gb|ACI60396.1| Holliday junction DNA helicase ruvB [Streptococcus pyogenes NZ131]
 gi|304429542|gb|EFM32592.1| crossover junction ATP-dependent DNA helicase RuvB [Streptococcus
           pyogenes ATCC 10782]
          Length = 332

 Score =  343 bits (880), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 162/327 (49%), Positives = 224/327 (68%), Gaps = 1/327 (0%)

Query: 6   GLLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
            +L  NV   E+     LRP+ L E+ GQ +      +FIEAAK R E+LDHVL  GPPG
Sbjct: 3   RILDNNVMGNEEFSDRTLRPQYLHEYIGQDKVKEQFAIFIEAAKRRDESLDHVLLFGPPG 62

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTT+A V+A ELGVN + TSGP + KAGDL A+L  LE  D+LFIDEIHR+ + VEE+
Sbjct: 63  LGKTTMAFVIANELGVNLKQTSGPAVEKAGDLVAILNELEPGDILFIDEIHRMPMSVEEV 122

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LY AMEDF +D+M+G G ++RS+ ++L  FTLI ATTR G+L+NPL+ RFGI   + +Y+
Sbjct: 123 LYSAMEDFYIDIMIGAGDTSRSIHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYQ 182

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            +DL  IV+R A +  + +  EAA ++A RSRGTPRIA RLL+RVRD+A++     IT +
Sbjct: 183 EKDLTEIVERTATIFEIKIDHEAARKLACRSRGTPRIANRLLKRVRDYAQIIGDGIITAQ 242

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           I D AL  L +D+ G D +D + L  +   + GGPVG+ T+S  ++E R+ +E++ EPY+
Sbjct: 243 ITDRALTMLDVDREGLDYIDQKILRTMIEMYQGGPVGLGTLSVNIAEERNTVEEMYEPYL 302

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           IQ+GF+ RT  GR+    A++HLG   
Sbjct: 303 IQKGFLMRTRTGRVATQKAYRHLGYPY 329


>gi|223935333|ref|ZP_03627251.1| Holliday junction DNA helicase RuvB [bacterium Ellin514]
 gi|223896217|gb|EEF62660.1| Holliday junction DNA helicase RuvB [bacterium Ellin514]
          Length = 339

 Score =  343 bits (880), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 166/328 (50%), Positives = 232/328 (70%), Gaps = 1/328 (0%)

Query: 5   EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E ++S  +++ DA + + LRP    +FTGQ +    L++ + AAK R EALDH+L  GPP
Sbjct: 3   ERIISDVLTKPDAALEMTLRPSLFSDFTGQPKVKERLEITVAAAKQRNEALDHILLSGPP 62

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++A+ +G +F+STSGP I KA DLA LLTNLE  DVLFIDEIHR+   +EE
Sbjct: 63  GLGKTTLASILAKAMGASFKSTSGPTIEKAADLAGLLTNLEAGDVLFIDEIHRMQPAIEE 122

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
            LYPAMEDF+LD+++ +GP+ARSV++NL RFTL+ ATTR GLL+ PL  RF +  RL++Y
Sbjct: 123 YLYPAMEDFKLDIIIDQGPNARSVRLNLPRFTLVGATTRSGLLSAPLLTRFPVRERLDYY 182

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           + E L+ IV R A+L  + +    A EIA RSRGTPRI   LLRRVRDFA+V     IT+
Sbjct: 183 QAEQLEKIVLRSARLLNVEIEPSGAHEIARRSRGTPRITNNLLRRVRDFAQVRSDGNITK 242

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           +IAD AL  L ID+ G D++D R L  +   F GGPVG+ +++  + E  D +E++ EPY
Sbjct: 243 DIADKALAMLEIDENGLDEMDKRILEAVIVKFSGGPVGVSSLAVTVGEEPDTLEEVYEPY 302

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           +I +G+++RTP+GR+   ++++ LG+  
Sbjct: 303 LIMEGYLKRTPQGRVATELSYKKLGLRP 330


>gi|15825808|pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
          Length = 334

 Score =  343 bits (879), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 161/328 (49%), Positives = 222/328 (67%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
             L+   +  D+ +  LRP++L+EF GQ      L + +EAAK R E LDHVL  GPPGL
Sbjct: 3   EFLTPERTVYDSGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGL 62

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLA ++A EL  N   TSGPV+ K GD+AA+LT+LE  DVLFIDEIHRL+  VEE+L
Sbjct: 63  GKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNKAVEELL 122

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           Y A+EDFQ+D+M+G+GPSA+S++I++  FTL+ AT R GLL++PL+ RFGI + L+FY +
Sbjct: 123 YSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATVRSGLLSSPLRSRFGIILELDFYTV 182

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           ++LK I++R A L  + + D AA  IA RSRGTPRIA RL +RVRD   V  A  I  +I
Sbjct: 183 KELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDI 242

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
               +  L ID  G D+ D + L  I   + GGPVG+  ++A L    D + ++ EPY++
Sbjct: 243 VLKTMEVLNIDDEGLDEFDRKILKTIIEIYRGGPVGLNALAASLGVEADTLSEVYEPYLL 302

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           Q GF+ RTPRGR++   A++HL  ++P 
Sbjct: 303 QAGFLARTPRGRIVTEKAYKHLKYEVPE 330


>gi|195977191|ref|YP_002122435.1| Holliday junction DNA helicase RuvB [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|238689839|sp|B4U5F8|RUVB_STREM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|195973896|gb|ACG61422.1| Holliday junction DNA helicase RuvB [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 333

 Score =  343 bits (879), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 168/330 (50%), Positives = 226/330 (68%), Gaps = 1/330 (0%)

Query: 6   GLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
            +L  ++  ++  +   LRP+ L E+ GQ      L +FIEAAK R E+LDHVL  GPPG
Sbjct: 3   RILDNDLIGDEGSVERTLRPQYLREYIGQDRVKDQLMIFIEAAKRREESLDHVLLFGPPG 62

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTT+A V+A ELGV+ + TSGP I KAGDL A+L +LE  DVLFIDEIHR+ + VEEI
Sbjct: 63  LGKTTMAFVIANELGVHLKQTSGPAIEKAGDLVAILNDLEPGDVLFIDEIHRMPMTVEEI 122

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LY AMEDF +D+M+G G ++RSV + L  FTLI ATTR G+L+NPL+ RFGI   + +Y+
Sbjct: 123 LYSAMEDFYIDIMIGAGDTSRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYQ 182

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
             DL  IV+R A +  + +  EAA E+A RSRGTPRIA RLL+RVRD+A++     IT +
Sbjct: 183 TADLTEIVERTADIFDMTIKHEAAYELARRSRGTPRIANRLLKRVRDYAQIMGDGMITTQ 242

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           I D AL  L +D+ G D +D + L  +   + GGPVG+ T+S  ++E RD +ED+ EPY+
Sbjct: 243 ITDKALTMLDVDQEGLDYVDQKILRTMIEVYQGGPVGLGTLSVNIAEERDTVEDMYEPYL 302

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           IQ+GFI RT  GR++   A+QHLG     +
Sbjct: 303 IQKGFIMRTRTGRVVTEKAYQHLGYPYEKK 332


>gi|114327765|ref|YP_744922.1| Holliday junction DNA helicase RuvB [Granulibacter bethesdensis
           CGDNIH1]
 gi|122327269|sp|Q0BT53|RUVB_GRABC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|114315939|gb|ABI61999.1| holliday junction DNA helicase ruvB [Granulibacter bethesdensis
           CGDNIH1]
          Length = 359

 Score =  343 bits (879), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 204/329 (62%), Positives = 252/329 (76%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
               +S    ++DA  + LRP++L EF GQ  +  NL +FI+AAKAR EA+DHVL  GPP
Sbjct: 9   ENRTVSSVRLEDDAAEASLRPQSLAEFIGQRASRENLSIFIQAAKARGEAMDHVLLHGPP 68

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLAQ+V+RELGV FR+TSGPVI +AGDLAA+LTNL+ RDVLFIDEIHRL   +EE
Sbjct: 69  GLGKTTLAQIVSRELGVGFRATSGPVIQRAGDLAAILTNLQPRDVLFIDEIHRLQPAIEE 128

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LYPAMEDFQLDL++GEGP+ARSV+I+L+ FTL+AATTR GLL  PL+DRFGIP+RL FY
Sbjct: 129 VLYPAMEDFQLDLIIGEGPAARSVRIDLAPFTLVAATTRAGLLATPLRDRFGIPLRLIFY 188

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
              +L+ IV RGA+  G  ++ E A EIA RSRGTPRIAGRLLRRVRDFA V     + R
Sbjct: 189 TASELELIVSRGAEKLGFDLSREGAAEIARRSRGTPRIAGRLLRRVRDFAMVQGVSPVDR 248

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
             ADAAL RL +D +G D +D RYL  IA +  GGPVG+ET++A L+E RD +ED+IEPY
Sbjct: 249 STADAALQRLEVDSLGLDAMDRRYLHRIAVHHAGGPVGVETLAAALAEARDTLEDVIEPY 308

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           +IQ+G I RT RGR+L    W+HLG+  P
Sbjct: 309 LIQEGLILRTSRGRMLGEAGWRHLGLVPP 337


>gi|159037424|ref|YP_001536677.1| Holliday junction DNA helicase RuvB [Salinispora arenicola CNS-205]
 gi|189046044|sp|A8LXW9|RUVB_SALAI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|157916259|gb|ABV97686.1| Holliday junction DNA helicase RuvB [Salinispora arenicola CNS-205]
          Length = 354

 Score =  343 bits (879), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 163/333 (48%), Positives = 227/333 (68%), Gaps = 1/333 (0%)

Query: 2   MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M  + L+S  VS  + D+   +RPR L EF  Q      L + ++ A  R    DH+L  
Sbjct: 1   MTGDNLVSAYVSDAERDVEASVRPRRLAEFIAQERVRDQLDLLLQGALRRGSPPDHILLS 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKT+LA +VA ELG + R TSGP I ++GDLAA+LT+L + DVLFIDEIHR++  
Sbjct: 61  GPPGLGKTSLANIVAAELGTSIRVTSGPAIERSGDLAAILTSLGEGDVLFIDEIHRIARP 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            EE+LY AMEDF++D++VG+GP A ++ +++  FTL+ ATTR GLLT P++DRFG    L
Sbjct: 121 AEELLYSAMEDFRVDVVVGKGPGATAIPLDVEPFTLVGATTRAGLLTGPMRDRFGFVAHL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           +FY   DL+T++ R A++ G+ +T + A EI+ RSRGTPRIA RLLRRVRDFAEV     
Sbjct: 181 DFYSPADLETLLHRSARILGVPITGDGAVEISGRSRGTPRIANRLLRRVRDFAEVRADGV 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +TRE A AALL   +D +G D+LD + LT +   F GGPVG+ T++  + E  D +E++ 
Sbjct: 241 VTREAARAALLVYDVDALGLDRLDRQVLTALVDLFRGGPVGLSTLAVAVGEQPDTVEEVC 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EP++++ G + RTPRGR+    AW+HLG   P+
Sbjct: 301 EPFLVRAGLLARTPRGRVATEAAWRHLGRTPPN 333


>gi|281355534|ref|ZP_06242028.1| Holliday junction DNA helicase RuvB [Victivallis vadensis ATCC
           BAA-548]
 gi|281318414|gb|EFB02434.1| Holliday junction DNA helicase RuvB [Victivallis vadensis ATCC
           BAA-548]
          Length = 341

 Score =  343 bits (879), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 164/328 (50%), Positives = 227/328 (69%), Gaps = 1/328 (0%)

Query: 5   EGLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E  ++  ++++D A  + LRP    +F GQ      L++F+ AAKAR EALDH+L  GPP
Sbjct: 3   ERFITSTLNKKDPARETSLRPPKFADFPGQDRVKEQLELFVHAAKAREEALDHILLCGPP 62

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++A E G N +S+SGP I K GDLA LLT LE  DVLFIDEIHRL+  VEE
Sbjct: 63  GLGKTTLAYIIANERGTNLKSSSGPAIEKPGDLAGLLTALEPGDVLFIDEIHRLNSTVEE 122

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
            LY AMEDF +D+M+ +G  ARSV++ +  FTLI ATTR G+++ PL+ RFG+ IRL++Y
Sbjct: 123 YLYSAMEDFFIDIMIEQGAGARSVRLTVPHFTLIGATTRQGMISAPLRSRFGLNIRLDYY 182

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           + E L  I++R A +  + + D+ A +IA R RGTPRIA  LLRR RD+A+V     IT 
Sbjct: 183 DAESLSRILKRSAGILDIDIDDDGARQIAGRCRGTPRIANNLLRRARDYAQVRADSVITG 242

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           ++A+ AL  L ID  G D++D+R L  I  +FGGGPVG++ I+  + E  D+IED+ EP+
Sbjct: 243 KVAEEALEMLQIDHDGLDEMDIRILETIIASFGGGPVGLKNIAVSIGEEEDSIEDVYEPF 302

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           +IQ+G++ RTP+GR+  P AW  +G+  
Sbjct: 303 LIQKGYLVRTPKGRVATPKAWDKVGMKP 330


>gi|212704639|ref|ZP_03312767.1| hypothetical protein DESPIG_02702 [Desulfovibrio piger ATCC 29098]
 gi|212672038|gb|EEB32521.1| hypothetical protein DESPIG_02702 [Desulfovibrio piger ATCC 29098]
          Length = 377

 Score =  342 bits (878), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 170/313 (54%), Positives = 232/313 (74%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A    +RPR+L++F GQ E  +NL+V++ AA+ R  ALDH LF G PGLGKTTLAQ++A 
Sbjct: 62  ALEESVRPRSLDDFIGQEELRANLRVYLGAARERGGALDHTLFYGNPGLGKTTLAQIMAA 121

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           ELGVN   TSGPV+ ++GDLAA+LTNL   D+LF+DEIHR+ I VEE+LYPAMEDF+LDL
Sbjct: 122 ELGVNLVCTSGPVLERSGDLAAILTNLSRNDILFVDEIHRMPIAVEEVLYPAMEDFKLDL 181

Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA 196
           ++G+GP+AR+VKI+L  FTL+ ATTR+GL++ PL+ RFGI  +L FY   +L  +V R A
Sbjct: 182 VIGQGPAARTVKIDLEPFTLVGATTRMGLISAPLRGRFGILSQLEFYTPAELARVVLRTA 241

Query: 197 KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAID 256
            + G+AVT + A EI  RSRGTPRIA RLLRRVRDFA +     IT E A  AL R+ +D
Sbjct: 242 HILGIAVTPDGAEEIGRRSRGTPRIANRLLRRVRDFAMMGGHDVITAEQAAEALRRMDVD 301

Query: 257 KMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRG 316
           ++G D++D R L ++  ++ GGPVG++T++   SE    IE++ EPY+IQ G ++RTPRG
Sbjct: 302 EIGLDRMDRRLLEVMITHYDGGPVGLKTLAVACSEEVRTIEEIYEPYLIQCGLLKRTPRG 361

Query: 317 RLLMPIAWQHLGI 329
           R++   A++HL +
Sbjct: 362 RMVTAKAYRHLNL 374


>gi|15825807|pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
          Length = 334

 Score =  342 bits (878), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 161/328 (49%), Positives = 222/328 (67%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
             L+   +  D+ +  LRP++L+EF GQ      L + +EAAK R E LDHVL  GPPGL
Sbjct: 3   EFLTPERTVYDSGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGL 62

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLA ++A EL  N   TSGPV+ K GD+AA+LT+LE  DVLFIDEIHRL+  VEE+L
Sbjct: 63  GKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNKAVEELL 122

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           Y A+EDFQ+D+M+G+GPSA+S++I++  FTL+ ATTR GLL++PL+  FGI + L+FY +
Sbjct: 123 YSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSAFGIILELDFYTV 182

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           ++LK I++R A L  + + D AA  IA RSRGTPRIA RL +RVRD   V  A  I  +I
Sbjct: 183 KELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDI 242

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
               +  L ID  G D+ D + L  I   + GGPVG+  ++A L    D + ++ EPY++
Sbjct: 243 VLKTMEVLNIDDEGLDEFDRKILKTIIEIYRGGPVGLNALAASLGVEADTLSEVYEPYLL 302

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           Q GF+ RTPRGR++   A++HL  ++P 
Sbjct: 303 QAGFLARTPRGRIVTEKAYKHLKYEVPE 330


>gi|312866523|ref|ZP_07726740.1| Holliday junction DNA helicase RuvB [Streptococcus downei F0415]
 gi|311097954|gb|EFQ56181.1| Holliday junction DNA helicase RuvB [Streptococcus downei F0415]
          Length = 332

 Score =  342 bits (878), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 169/327 (51%), Positives = 230/327 (70%), Gaps = 1/327 (0%)

Query: 6   GLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
            +L   + + E+     LRP+T +E+ GQ +    L +FIEAAK R EALDHVL  GPPG
Sbjct: 3   RILDDELMESEEQVERTLRPQTFKEYIGQDKVKDQLAIFIEAAKLRDEALDHVLLFGPPG 62

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTT+A V+A ELGVN + TSGP I KAGDL A+L +LE  DVLFIDEIHR+ + VEE+
Sbjct: 63  LGKTTMAFVIANELGVNLKQTSGPAIEKAGDLVAILNDLEPGDVLFIDEIHRMPMAVEEV 122

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LY AMEDF +D+M+G G ++RSV ++L  FTLI ATTR G+L+NPL+ RFGI   + +YE
Sbjct: 123 LYSAMEDFYIDIMIGAGEASRSVHLDLPPFTLIGATTRAGMLSNPLRARFGINGHMEYYE 182

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
             DL  IV+R A++    +T EAA ++A RSRGTPRIA RLL+RVRD+A++     I  +
Sbjct: 183 EVDLTEIVERTAEIFEAEITHEAAIQLAKRSRGTPRIANRLLKRVRDYAQIIGDGLIDNK 242

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           IAD AL  L +D+ G D +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+ EPY+
Sbjct: 243 IADKALTLLDVDQEGLDYIDQKILRTMIEMYGGGPVGLGTLSINIAEERETVEDMYEPYL 302

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           IQ+GF+ RT  GR+    A++HLG++ 
Sbjct: 303 IQKGFMMRTRSGRVATAKAYEHLGLEP 329


>gi|296139645|ref|YP_003646888.1| Holliday junction DNA helicase RuvB [Tsukamurella paurometabola DSM
           20162]
 gi|296027779|gb|ADG78549.1| Holliday junction DNA helicase RuvB [Tsukamurella paurometabola DSM
           20162]
          Length = 364

 Score =  342 bits (878), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 157/327 (48%), Positives = 225/327 (68%), Gaps = 1/327 (0%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           GL+  +    D D   LRP++L+EF GQ +    L++ +  A+ R    DH+L  GPPGL
Sbjct: 18  GLMGPSALSGD-DSDSLRPKSLDEFIGQPKVREQLQLVLHGARKRGGTPDHILLSGPPGL 76

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKT+LA ++A ELG   R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++   EE+L
Sbjct: 77  GKTSLAMIIAAELGTALRVTSGPALERAGDLAAMLSNLVEGDVLFIDEIHRMARPAEEML 136

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           Y AMEDF++D++VG+GP A S+ ++++ FTL+ ATTR G LT PL+DRFG    ++FY+ 
Sbjct: 137 YLAMEDFRVDVVVGKGPGATSIPLDVAPFTLVGATTRSGSLTGPLRDRFGFTAHMDFYDT 196

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
            DL  +++R AK+ G+ +  EAA EI  RSRGTPRIA RLLRRVRDFA+V     +T ++
Sbjct: 197 ADLIQVIERSAKILGIEIVREAAAEIGSRSRGTPRIANRLLRRVRDFADVRADGIVTVDV 256

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           A  AL    +D++G D+LD   L  + R+FGGGPVG+ T++  + E    +E++ EP+++
Sbjct: 257 ARGALKVYDVDELGLDRLDRAVLGALIRSFGGGPVGVSTLAVAVGEEPGTVEEVCEPFLV 316

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           + G + RTPRGR+    AW HLG++ P
Sbjct: 317 RAGMLARTPRGRVATMAAWHHLGLEPP 343


>gi|108799234|ref|YP_639431.1| Holliday junction DNA helicase RuvB [Mycobacterium sp. MCS]
 gi|119868350|ref|YP_938302.1| Holliday junction DNA helicase B [Mycobacterium sp. KMS]
 gi|126434892|ref|YP_001070583.1| Holliday junction DNA helicase RuvB [Mycobacterium sp. JLS]
 gi|123369346|sp|Q1B9Q9|RUVB_MYCSS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|171769149|sp|A1UFA4|RUVB_MYCSK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|171855233|sp|A3PYW5|RUVB_MYCSJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|108769653|gb|ABG08375.1| Holliday junction DNA helicase subunit RuvB [Mycobacterium sp. MCS]
 gi|119694439|gb|ABL91512.1| Holliday junction DNA helicase subunit RuvB [Mycobacterium sp. KMS]
 gi|126234692|gb|ABN98092.1| Holliday junction DNA helicase RuvB [Mycobacterium sp. JLS]
          Length = 357

 Score =  342 bits (878), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 165/330 (50%), Positives = 227/330 (68%), Gaps = 1/330 (0%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           DR+   +  V + D D S LRPR+L EF GQ      L++ +E AK R    DH+L  GP
Sbjct: 16  DRDVSPALTVGEGDIDAS-LRPRSLGEFIGQPRVREQLQLVLEGAKNRGGTPDHILLSGP 74

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKT+LA ++A EL  + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++   E
Sbjct: 75  PGLGKTSLAMIIAAELSSSLRVTSGPALERAGDLAAMLSNLVEGDVLFIDEIHRIARPAE 134

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LY AMEDF++D++VG+GP A S+ + ++ FTL+ ATTR G LT PL+DRFG    ++F
Sbjct: 135 EMLYLAMEDFRVDVVVGKGPGATSIPLEVAPFTLVGATTRSGALTGPLRDRFGFTAHMDF 194

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           YE  +L+ ++ R A + G+ +  EA  EIA RSRGTPRIA RLLRRVRD+AEV     IT
Sbjct: 195 YEPAELERVLARSAGILGIHLGTEAGAEIARRSRGTPRIANRLLRRVRDYAEVRADGVIT 254

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           R+IA AAL    +D++G D+LD   L+ + R+FGGGPVG+ T++  + E    +E++ EP
Sbjct: 255 RDIAKAALEVYDVDELGLDRLDRAVLSALIRSFGGGPVGVSTLAVAVGEEPTTVEEVCEP 314

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++++ G I RTPRGR+    AW HLG+  P
Sbjct: 315 FLVRAGMIARTPRGRVATASAWTHLGLTPP 344


>gi|172040616|ref|YP_001800330.1| Holliday junction DNA helicase RuvB [Corynebacterium urealyticum
           DSM 7109]
 gi|171851920|emb|CAQ04896.1| ruvB [Corynebacterium urealyticum DSM 7109]
          Length = 367

 Score =  342 bits (878), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 156/328 (47%), Positives = 225/328 (68%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            L    +  +    S LRP++L EF GQ +    L++ +  A++R  A DHVL  GPPGL
Sbjct: 35  ELSGAQIPGDTEFDSSLRPKSLTEFIGQPKVRQQLELVLGGARSRGVAPDHVLLAGPPGL 94

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTT+A ++A+ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++   EE+L
Sbjct: 95  GKTTMAMIIAQELGSSLRMTSGPALERAGDLAAMLSNLMEGDVLFIDEIHRMARPAEEML 154

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           Y AMEDF++D++VG+GP A S+ I ++ FTL+ ATTR G+LT PL+DRFG   ++ FY+ 
Sbjct: 155 YMAMEDFRIDVIVGKGPGATSIPIEIAPFTLVGATTRAGMLTGPLRDRFGFTAQMEFYDT 214

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
            +L  +V R A + G+ +  +AA EIA RSRGTPRIA RLLRRVRD+A+V     IT +I
Sbjct: 215 PELTRVVTRAAGILGVDIDSDAATEIASRSRGTPRIANRLLRRVRDYADVQADGRITVDI 274

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           A  AL+   +D++G D+LD   L  + R  GGGPVG+ T++  + E    +E++ EP+++
Sbjct: 275 ARQALVVFDVDEVGLDRLDNGVLEALVRGHGGGPVGVNTLALAVGEEPSTVEEVCEPFLV 334

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           + G + RTPRGR+    AW+H+G++ P 
Sbjct: 335 RAGMVARTPRGRVATAAAWRHVGLEPPE 362


>gi|158316900|ref|YP_001509408.1| Holliday junction DNA helicase RuvB [Frankia sp. EAN1pec]
 gi|238686842|sp|A8KZE6|RUVB_FRASN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|158112305|gb|ABW14502.1| Holliday junction DNA helicase RuvB [Frankia sp. EAN1pec]
          Length = 353

 Score =  342 bits (878), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 160/331 (48%), Positives = 226/331 (68%), Gaps = 1/331 (0%)

Query: 2   MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M  EGL+S   + E+      LRP+ L+EF GQ +    L + +E A+ R    DHVL  
Sbjct: 1   MSGEGLVSAAAAPEEQAFEAGLRPKNLDEFVGQRKVREQLSIMLEGARGRGRPPDHVLLS 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKT+LA ++A ELGV  R TSGP I +AGDL A+LT L   +VLF+DEIHR++  
Sbjct: 61  GPPGLGKTSLAMIIAEELGVPLRMTSGPAIERAGDLVAILTALTPGEVLFLDEIHRIARP 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            EE+LY AMEDF++D+++G+GP A ++ ++L+ FTL+ ATTR GLLT PL+DRFG    +
Sbjct: 121 AEELLYAAMEDFRVDVVLGKGPGATAIPLDLAPFTLVGATTRSGLLTGPLRDRFGFTAHM 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           +FY+  +L  ++ R A+L G+ +T+  A E+A RSRGTPRIA RLLRRVRD+AEV     
Sbjct: 181 DFYDAAELALVLTRSARLLGVQLTEGGAAEVAGRSRGTPRIANRLLRRVRDYAEVRADGV 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           ++RE+A AAL    +D +G D+LD   L  + R FGGGPVG+ T++  + E  D +ED+ 
Sbjct: 241 VSREVARAALRIYDVDALGLDRLDRAVLDALVRRFGGGPVGLSTLAVAVGEEADTVEDVS 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           EP++++ G + RT RGR+  P A+ HLG++ 
Sbjct: 301 EPFLLRAGLLIRTARGRVATPAAFTHLGLEP 331


>gi|171910892|ref|ZP_02926362.1| Holliday junction DNA helicase B [Verrucomicrobium spinosum DSM
           4136]
          Length = 344

 Score =  342 bits (877), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 161/332 (48%), Positives = 224/332 (67%), Gaps = 1/332 (0%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M +        + E      LRP    EFTGQ      L + +EAA+ R + LDHVL  G
Sbjct: 1   MSQTFYDQTTTAPESPYDVALRPPDFSEFTGQERVKERLVLMVEAARQRGDTLDHVLLCG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA +VA  +G    STSGP I +AGDLA +LTNL++RD+LFIDEIHRL   +
Sbjct: 61  PPGLGKTTLANIVATAVGSKLHSTSGPQIERAGDLAGILTNLQERDILFIDEIHRLHPSI 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE LYPAMEDF+LD+++ +GP AR+++I+L  FTL+ ATTR G+LT P++ RFGIP RL+
Sbjct: 121 EEYLYPAMEDFRLDIIIDQGPKARTIRIDLPPFTLVGATTRAGMLTAPMRGRFGIPNRLD 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y +++L+ I+ R A L  + +  + A E+A RSRGTPR+A  LLR VRD+A+V  A   
Sbjct: 181 YYTVDELQKILLRSAGLIQVQMESDGAREVAKRSRGTPRVANHLLRWVRDYAQVRAANQA 240

Query: 242 TR-EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
              ++A AAL  L ID+ G D++D R L  +   F GGPVG+ +I+  + E    +ED+ 
Sbjct: 241 VSGQVAAAALSMLDIDEDGLDEMDKRILDALINKFAGGPVGLNSIAVAVHEDASTLEDVH 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EPY++ QG+++RTPRGR+ MP A++ LG+ +P
Sbjct: 301 EPYLVMQGYVKRTPRGRVAMPSAYKKLGLPVP 332


>gi|225867655|ref|YP_002743603.1| Holliday junction DNA helicase, subunit B [Streptococcus equi
           subsp. zooepidemicus]
 gi|259495678|sp|C0MC84|RUVB_STRS7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|225700931|emb|CAW97625.1| Holliday junction DNA helicase, subunit B [Streptococcus equi
           subsp. zooepidemicus]
          Length = 335

 Score =  342 bits (877), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 168/327 (51%), Positives = 225/327 (68%), Gaps = 1/327 (0%)

Query: 6   GLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
            +L  ++  ++  +   LRP+ L E+ GQ      L +FIEAAK R E+LDHVL  GPPG
Sbjct: 3   RILDNDLIGDEGSVERTLRPQYLREYIGQDRVKDQLMIFIEAAKRREESLDHVLLFGPPG 62

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTT+A V+A ELGV+ + TSGP I KAGDL A+L +LE  DVLFIDEIHR+ + VEEI
Sbjct: 63  LGKTTMAFVIANELGVHLKQTSGPAIEKAGDLVAILNDLEPGDVLFIDEIHRMPMAVEEI 122

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LY AMEDF +D+M+G G ++RSV + L  FTLI ATTR G+L+NPL+ RFGI   + +Y+
Sbjct: 123 LYSAMEDFYIDIMIGAGDTSRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYQ 182

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
             DL  IV+R A +  + +  EAA E+A RSRGTPRIA RLL+RVRD+A++     IT +
Sbjct: 183 TADLTEIVERTADIFDMEIKHEAAYELARRSRGTPRIANRLLKRVRDYAQIMGDGMITTQ 242

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           I D AL  L +D+ G D +D + L  +   + GGPVG+ T+S  ++E RD +ED+ EPY+
Sbjct: 243 ITDKALTMLDVDQEGLDYVDQKILRTMIEVYQGGPVGLGTLSVNIAEERDTVEDMYEPYL 302

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           IQ+GFI RT  GR++   A+QHLG   
Sbjct: 303 IQKGFIMRTRTGRVVTEKAYQHLGYPY 329


>gi|41407136|ref|NP_959972.1| Holliday junction DNA helicase B [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|118464703|ref|YP_882655.1| Holliday junction DNA helicase RuvB [Mycobacterium avium 104]
 gi|254775921|ref|ZP_05217437.1| Holliday junction DNA helicase RuvB [Mycobacterium avium subsp.
           avium ATCC 25291]
 gi|47606088|sp|P61535|RUVB_MYCPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|166231502|sp|A0QIB7|RUVB_MYCA1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|41395487|gb|AAS03355.1| RuvB [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118165990|gb|ABK66887.1| holliday junction DNA helicase RuvB [Mycobacterium avium 104]
          Length = 351

 Score =  342 bits (877), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 167/330 (50%), Positives = 229/330 (69%), Gaps = 1/330 (0%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           DR+   +    + D D+S LRPR+L EF GQ      L++ IE AK R    DH+L  GP
Sbjct: 10  DRDVSGALVPGEGDIDVS-LRPRSLREFIGQPRVREQLQLVIEGAKNRGGTPDHILLSGP 68

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKT+LA ++A ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++   E
Sbjct: 69  PGLGKTSLAMIIAAELGSSLRVTSGPALERAGDLAAMLSNLVEHDVLFIDEIHRIARPAE 128

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LY AMEDF++D++VG+GP A S+ + ++ FTL+ ATTR G LT PL+DRFG    ++F
Sbjct: 129 EMLYLAMEDFRVDVVVGKGPGATSIPLEVAPFTLVGATTRSGALTGPLRDRFGFTAHMDF 188

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           YE  +L+ ++ R A + G+ +  EAA EIA RSRGTPRIA RLLRRVRDFAEV     IT
Sbjct: 189 YEPAELQQVLARSAGILGIELGAEAAEEIARRSRGTPRIANRLLRRVRDFAEVRADGVIT 248

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           R++A AAL    +D++G D+LD   LT + R+FGGGPVG+ T++  + E    +E++ EP
Sbjct: 249 RDVAKAALAVYDVDELGLDRLDRAVLTALTRSFGGGPVGVSTLAVAVGEEAATVEEVCEP 308

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++++ G + RTPRGR+    AW HLG+  P
Sbjct: 309 FLVRAGMVARTPRGRVATAQAWTHLGMVPP 338


>gi|118617341|ref|YP_905673.1| Holliday junction DNA helicase RuvB [Mycobacterium ulcerans Agy99]
 gi|171460876|sp|A0PPD3|RUVB_MYCUA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|118569451|gb|ABL04202.1| Holliday junction DNA helicase RuvB [Mycobacterium ulcerans Agy99]
          Length = 345

 Score =  342 bits (877), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 161/329 (48%), Positives = 228/329 (69%), Gaps = 1/329 (0%)

Query: 5   EGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E  +S  ++  D D+   LRPR+L EF GQ      L++ I+ AK R    DH+L  GPP
Sbjct: 7   EREVSPALTVGDGDVDVSLRPRSLREFIGQPRVREQLQLVIQGAKNRGGTPDHILLSGPP 66

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKT+LA ++A ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++   EE
Sbjct: 67  GLGKTSLAVIIAAELGSSLRMTSGPALERAGDLAAMLSNLVEHDVLFIDEIHRIARPAEE 126

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LY AMEDF++D++VG+GP A S+ ++++ FTL+ ATTR G LT PL+DRFG    ++FY
Sbjct: 127 MLYLAMEDFRVDVVVGKGPGATSIPLDVAPFTLVGATTRSGALTGPLRDRFGFTAHMDFY 186

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           E  +L+ ++ R A + G+ +  +A  EIA RSRGTPRIA RLLRRVRDFAEV     ITR
Sbjct: 187 EPAELERVLVRSAGILGIQLGADAGAEIARRSRGTPRIANRLLRRVRDFAEVRADGVITR 246

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           ++A AAL    +D++G D+LD   L+ + R+F GGPVG+ T++  + E    +E++ EP+
Sbjct: 247 DVAKAALAVYDVDELGLDRLDRAVLSALTRSFSGGPVGVSTLAVAVGEEASTVEEVCEPF 306

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           +++ G + RTPRGR+   +AW HLG+  P
Sbjct: 307 LVRAGMVARTPRGRVATALAWTHLGMTPP 335


>gi|77411220|ref|ZP_00787571.1| Holliday junction DNA helicase RuvB [Streptococcus agalactiae
           CJB111]
 gi|77413884|ref|ZP_00790061.1| Holliday junction DNA helicase RuvB [Streptococcus agalactiae 515]
 gi|77160067|gb|EAO71201.1| Holliday junction DNA helicase RuvB [Streptococcus agalactiae 515]
 gi|77162743|gb|EAO73703.1| Holliday junction DNA helicase RuvB [Streptococcus agalactiae
           CJB111]
          Length = 318

 Score =  342 bits (877), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 166/312 (53%), Positives = 218/312 (69%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              LRP+ L E+ GQ +    LK+FIEAAK R E+LDHVL  GPPGLGKTT+A V+A EL
Sbjct: 3   ERTLRPQYLREYIGQDKVKDQLKIFIEAAKLRDESLDHVLLFGPPGLGKTTMAFVIANEL 62

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138
           GVN + TSGP I K+GDL A+L +LE  DVLFIDEIHR+ + VEE+LY AMEDF +D+M+
Sbjct: 63  GVNLKQTSGPAIEKSGDLVAILNDLEPGDVLFIDEIHRMPMAVEEVLYSAMEDFYIDIMI 122

Query: 139 GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKL 198
           G G ++RSV ++L  FTLI ATTR G+L+NPL+ RFGI   + +YE  DL  I++R A +
Sbjct: 123 GAGETSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYEENDLTEIIERTADI 182

Query: 199 TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKM 258
             + +T EAA E+A RSRGTPRIA RLL+RVRD+A++     I   I D AL  L +D  
Sbjct: 183 FEMKITYEAASELARRSRGTPRIANRLLKRVRDYAQIMGDGLIDDNITDKALTMLDVDHE 242

Query: 259 GFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRL 318
           G D +D + L  +   + GGPVG+ T+S  ++E RD +ED+ EPY+IQ+GFI RT  GR+
Sbjct: 243 GLDYVDQKILRTMIEMYNGGPVGLGTLSVNIAEERDTVEDMYEPYLIQKGFIMRTRTGRV 302

Query: 319 LMPIAWQHLGID 330
               A++HLG  
Sbjct: 303 ATDKAYEHLGYQ 314


>gi|15609729|ref|NP_217108.1| Holliday junction DNA helicase RuvB [Mycobacterium tuberculosis
           H37Rv]
 gi|15842132|ref|NP_337169.1| Holliday junction DNA helicase RuvB [Mycobacterium tuberculosis
           CDC1551]
 gi|31793776|ref|NP_856269.1| Holliday junction DNA helicase RuvB [Mycobacterium bovis AF2122/97]
 gi|121638477|ref|YP_978701.1| Holliday junction DNA helicase RuvB [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|148662431|ref|YP_001283954.1| Holliday junction DNA helicase RuvB [Mycobacterium tuberculosis
           H37Ra]
 gi|148823787|ref|YP_001288541.1| Holliday junction DNA helicase B [Mycobacterium tuberculosis F11]
 gi|215404542|ref|ZP_03416723.1| Holliday junction DNA helicase RuvB [Mycobacterium tuberculosis
           02_1987]
 gi|215412368|ref|ZP_03421128.1| Holliday junction DNA helicase RuvB [Mycobacterium tuberculosis
           94_M4241A]
 gi|215427995|ref|ZP_03425914.1| Holliday junction DNA helicase RuvB [Mycobacterium tuberculosis
           T92]
 gi|215431547|ref|ZP_03429466.1| Holliday junction DNA helicase RuvB [Mycobacterium tuberculosis
           EAS054]
 gi|215446843|ref|ZP_03433595.1| Holliday junction DNA helicase RuvB [Mycobacterium tuberculosis
           T85]
 gi|218754330|ref|ZP_03533126.1| Holliday junction DNA helicase RuvB [Mycobacterium tuberculosis GM
           1503]
 gi|219558596|ref|ZP_03537672.1| Holliday junction DNA helicase RuvB [Mycobacterium tuberculosis
           T17]
 gi|224990971|ref|YP_002645658.1| Holliday junction DNA helicase B [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253798326|ref|YP_003031327.1| Holliday junction DNA helicase ruvB [Mycobacterium tuberculosis KZN
           1435]
 gi|254232710|ref|ZP_04926037.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis C]
 gi|254365261|ref|ZP_04981306.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis
           str. Haarlem]
 gi|254551643|ref|ZP_05142090.1| Holliday junction DNA helicase RuvB [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|260187605|ref|ZP_05765079.1| Holliday junction DNA helicase RuvB [Mycobacterium tuberculosis
           CPHL_A]
 gi|260201720|ref|ZP_05769211.1| Holliday junction DNA helicase RuvB [Mycobacterium tuberculosis
           T46]
 gi|260205914|ref|ZP_05773405.1| Holliday junction DNA helicase RuvB [Mycobacterium tuberculosis
           K85]
 gi|289444131|ref|ZP_06433875.1| Holliday junction DNA helicase RuvB [Mycobacterium tuberculosis
           T46]
 gi|289448242|ref|ZP_06437986.1| Holliday junction DNA helicase RuvB [Mycobacterium tuberculosis
           CPHL_A]
 gi|289553619|ref|ZP_06442829.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis KZN
           605]
 gi|289570763|ref|ZP_06450990.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis
           T17]
 gi|289575302|ref|ZP_06455529.1| Holliday junction DNA helicase ruvB [Mycobacterium tuberculosis
           K85]
 gi|289746385|ref|ZP_06505763.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis
           02_1987]
 gi|289751216|ref|ZP_06510594.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis
           T92]
 gi|289754711|ref|ZP_06514089.1| holliday junction DNA helicase B [Mycobacterium tuberculosis
           EAS054]
 gi|289758723|ref|ZP_06518101.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis
           T85]
 gi|289762765|ref|ZP_06522143.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis GM
           1503]
 gi|294994299|ref|ZP_06799990.1| Holliday junction DNA helicase RuvB [Mycobacterium tuberculosis
           210]
 gi|297635202|ref|ZP_06952982.1| Holliday junction DNA helicase RuvB [Mycobacterium tuberculosis KZN
           4207]
 gi|297732195|ref|ZP_06961313.1| Holliday junction DNA helicase RuvB [Mycobacterium tuberculosis KZN
           R506]
 gi|298526067|ref|ZP_07013476.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis
           94_M4241A]
 gi|306776866|ref|ZP_07415203.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis
           SUMu001]
 gi|306972981|ref|ZP_07485642.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis
           SUMu010]
 gi|307080691|ref|ZP_07489861.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis
           SUMu011]
 gi|307085280|ref|ZP_07494393.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis
           SUMu012]
 gi|313659530|ref|ZP_07816410.1| Holliday junction DNA helicase RuvB [Mycobacterium tuberculosis KZN
           V2475]
 gi|54039577|sp|P66754|RUVB_MYCBO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|54042205|sp|P66753|RUVB_MYCTU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|166231503|sp|A1KLU0|RUVB_MYCBP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|166231504|sp|A5U5U2|RUVB_MYCTA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|254767433|sp|C1AF61|RUVB_MYCBT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|3261621|emb|CAB01285.1| PROBABLE HOLLIDAY JUNCTION DNA HELICASE RUVB [Mycobacterium
           tuberculosis H37Rv]
 gi|13882416|gb|AAK46983.1| Holliday junction DNA helicase RuvB [Mycobacterium tuberculosis
           CDC1551]
 gi|31619370|emb|CAD94808.1| PROBABLE HOLLIDAY JUNCTION DNA HELICASE RUVB [Mycobacterium bovis
           AF2122/97]
 gi|121494125|emb|CAL72603.1| Probable holliday junction DNA helicase ruvB [Mycobacterium bovis
           BCG str. Pasteur 1173P2]
 gi|124601769|gb|EAY60779.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis C]
 gi|134150774|gb|EBA42819.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis
           str. Haarlem]
 gi|148506583|gb|ABQ74392.1| Holliday junction DNA helicase RuvB [Mycobacterium tuberculosis
           H37Ra]
 gi|148722314|gb|ABR06939.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis
           F11]
 gi|224774084|dbj|BAH26890.1| Holliday junction DNA helicase B [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253319829|gb|ACT24432.1| Holliday junction DNA helicase ruvB [Mycobacterium tuberculosis KZN
           1435]
 gi|289417050|gb|EFD14290.1| Holliday junction DNA helicase RuvB [Mycobacterium tuberculosis
           T46]
 gi|289421200|gb|EFD18401.1| Holliday junction DNA helicase RuvB [Mycobacterium tuberculosis
           CPHL_A]
 gi|289438251|gb|EFD20744.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis KZN
           605]
 gi|289539733|gb|EFD44311.1| Holliday junction DNA helicase ruvB [Mycobacterium tuberculosis
           K85]
 gi|289544517|gb|EFD48165.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis
           T17]
 gi|289686913|gb|EFD54401.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis
           02_1987]
 gi|289691803|gb|EFD59232.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis
           T92]
 gi|289695298|gb|EFD62727.1| holliday junction DNA helicase B [Mycobacterium tuberculosis
           EAS054]
 gi|289710271|gb|EFD74287.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis GM
           1503]
 gi|289714287|gb|EFD78299.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis
           T85]
 gi|298495861|gb|EFI31155.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis
           94_M4241A]
 gi|308214721|gb|EFO74120.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis
           SUMu001]
 gi|308357597|gb|EFP46448.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis
           SUMu010]
 gi|308361539|gb|EFP50390.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis
           SUMu011]
 gi|308365150|gb|EFP54001.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis
           SUMu012]
 gi|323718788|gb|EGB27945.1| Holliday junction DNA helicase ruvB [Mycobacterium tuberculosis
           CDC1551A]
 gi|326904205|gb|EGE51138.1| Holliday junction DNA helicase ruvB [Mycobacterium tuberculosis
           W-148]
 gi|328458096|gb|AEB03519.1| holliday junction DNA helicase ruvB [Mycobacterium tuberculosis KZN
           4207]
          Length = 344

 Score =  342 bits (877), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 164/334 (49%), Positives = 231/334 (69%), Gaps = 2/334 (0%)

Query: 1   MMDR-EGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M +R +  +S  ++  + DI   LRPR+L EF GQ      L++ IE AK R    DH+L
Sbjct: 1   MTERSDRDVSPALTVGEGDIDVSLRPRSLREFIGQPRVREQLQLVIEGAKNRGGTPDHIL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKT+LA ++A ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++
Sbjct: 61  LSGPPGLGKTSLAMIIAAELGSSLRVTSGPALERAGDLAAMLSNLVEHDVLFIDEIHRIA 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
              EE+LY AMEDF++D++VG+GP A S+ + ++ FTL+ ATTR G LT PL+DRFG   
Sbjct: 121 RPAEEMLYLAMEDFRVDVVVGKGPGATSIPLEVAPFTLVGATTRSGALTGPLRDRFGFTA 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
            ++FYE  +L+ ++ R A + G+ +  +A  EIA RSRGTPRIA RLLRRVRDFAEV   
Sbjct: 181 HMDFYEPAELERVLARSAGILGIELGADAGAEIARRSRGTPRIANRLLRRVRDFAEVRAD 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             ITR++A AAL    +D++G D+LD   L+ + R+FGGGPVG+ T++  + E    +E+
Sbjct: 241 GVITRDVAKAALEVYDVDELGLDRLDRAVLSALTRSFGGGPVGVSTLAVAVGEEAATVEE 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           + EP++++ G + RTPRGR+   +AW HLG+  P
Sbjct: 301 VCEPFLVRAGMVARTPRGRVATALAWTHLGMTPP 334


>gi|183982125|ref|YP_001850416.1| Holliday junction DNA helicase RuvB [Mycobacterium marinum M]
 gi|238690933|sp|B2HN63|RUVB_MYCMM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|183175451|gb|ACC40561.1| Holliday junction DNA helicase RuvB [Mycobacterium marinum M]
          Length = 345

 Score =  342 bits (877), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 161/329 (48%), Positives = 228/329 (69%), Gaps = 1/329 (0%)

Query: 5   EGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E  +S  ++  D D+   LRPR+L EF GQ      L++ I+ AK R    DH+L  GPP
Sbjct: 7   EREVSPALTVGDGDVDVSLRPRSLREFIGQPRVREQLQLVIQGAKNRGGTPDHILLSGPP 66

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKT+LA ++A ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++   EE
Sbjct: 67  GLGKTSLAMIIAAELGSSLRMTSGPALERAGDLAAMLSNLVEHDVLFIDEIHRIARPAEE 126

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LY AMEDF++D++VG+GP A S+ ++++ FTL+ ATTR G LT PL+DRFG    ++FY
Sbjct: 127 MLYLAMEDFRVDVVVGKGPGATSIPLDVAPFTLVGATTRSGALTGPLRDRFGFTAHMDFY 186

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           E  +L+ ++ R A + G+ +  +A  EIA RSRGTPRIA RLLRRVRDFAEV     ITR
Sbjct: 187 EPAELERVLVRSAGILGIQLGADAGAEIARRSRGTPRIANRLLRRVRDFAEVRADGVITR 246

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           ++A AAL    +D++G D+LD   L+ + R+F GGPVG+ T++  + E    +E++ EP+
Sbjct: 247 DVAKAALAVYDVDELGLDRLDRAVLSALTRSFSGGPVGVSTLAVAVGEEASTVEEVCEPF 306

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           +++ G + RTPRGR+   +AW HLG+  P
Sbjct: 307 LVRAGMVARTPRGRVATALAWTHLGMTPP 335


>gi|15825813|pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
          Length = 334

 Score =  342 bits (876), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 161/328 (49%), Positives = 222/328 (67%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
             L+   +  D+ +  LRP++L+EF GQ      L + +EAAK R E LDHVL  GPPGL
Sbjct: 3   EFLTPERTVYDSGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGL 62

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLA ++A EL  N   TSGPV+ K GD+AA+LT+LE  DVLFIDEIHRL+  VEE+L
Sbjct: 63  GKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNKAVEELL 122

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           Y A+EDFQ+D+M+G+GPSA+S++I++  FTL+ ATTR GLL++PL+ RFGI + L+FY +
Sbjct: 123 YSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTV 182

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           ++LK I++R A L  + + D AA  IA RSRGT RIA RL +RVRD   V  A  I  +I
Sbjct: 183 KELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTGRIAIRLTKRVRDMLTVVKADRINTDI 242

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
               +  L ID  G D+ D + L  I   + GGPVG+  ++A L    D + ++ EPY++
Sbjct: 243 VLKTMEVLNIDDEGLDEFDRKILKTIIEIYRGGPVGLNALAASLGVEADTLSEVYEPYLL 302

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           Q GF+ RTPRGR++   A++HL  ++P 
Sbjct: 303 QAGFLARTPRGRIVTEKAYKHLKYEVPE 330


>gi|24212372|sp|Q8P302|RUVB_STRP8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
          Length = 332

 Score =  342 bits (876), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 161/327 (49%), Positives = 224/327 (68%), Gaps = 1/327 (0%)

Query: 6   GLLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
            +L  NV   E+     LRP+ L E+ GQ +      +FIEAAK R E+LDHVL  GPPG
Sbjct: 3   RILDNNVMGNEEFSDRTLRPQYLHEYIGQDKVKEQFAIFIEAAKRRDESLDHVLLFGPPG 62

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTT+A V+A ELGVN + TSGP + KAGDL A+L  LE  D+LFIDEIHR+ + VEE+
Sbjct: 63  LGKTTMAFVIANELGVNLKQTSGPAVEKAGDLVAILNELEPGDILFIDEIHRMPMSVEEV 122

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LY AMEDF +D+M+G G ++RS+ ++L  FTLI ATTR G+L+NPL+ RFGI   + +Y+
Sbjct: 123 LYSAMEDFYIDIMIGAGDTSRSIHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYQ 182

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            +DL  IV+R A +  + +  EAA ++A RSRGTPRIA RLL+RVRD+A++     IT +
Sbjct: 183 EKDLTEIVERTATIFEIKIDHEAARKLACRSRGTPRIANRLLKRVRDYAQIIGDGIITAQ 242

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           I D AL  L +D+ G + +D + L  +   + GGPVG+ T+S  ++E R+ +E++ EPY+
Sbjct: 243 ITDRALTMLDVDREGLNYIDQKILRTMIEMYQGGPVGLGTLSVNIAEERNTVEEMYEPYL 302

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           IQ+GF+ RT  GR+    A++HLG   
Sbjct: 303 IQKGFLMRTRTGRVATQKAYRHLGYPY 329


>gi|254409986|ref|ZP_05023766.1| Holliday junction DNA helicase RuvB [Microcoleus chthonoplastes PCC
           7420]
 gi|196183022|gb|EDX78006.1| Holliday junction DNA helicase RuvB [Microcoleus chthonoplastes PCC
           7420]
          Length = 364

 Score =  342 bits (876), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 156/323 (48%), Positives = 216/323 (66%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L +    + +     +RP  L ++ GQ E    L++ I AAKAR EALDH+L  GPPGLG
Sbjct: 39  LATATADETENQEEGIRPHRLADYIGQKELKDVLEIAIAAAKARNEALDHLLLYGPPGLG 98

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTT++ ++A E+G N + T+ P + +  D+  +L NL+  D+LFIDEIHRL+ + EE+LY
Sbjct: 99  KTTMSLILATEMGTNCKITAAPALERPRDIVGILVNLKPGDILFIDEIHRLTRMSEELLY 158

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           PAMED++LD+ +G+G SAR+  I L +FTL+ ATTRVG LT+PL+DRFG+  RL FYE E
Sbjct: 159 PAMEDYRLDITIGKGQSARTRSIPLPQFTLVGATTRVGSLTSPLRDRFGLIQRLRFYEPE 218

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +L  IVQR A+L    +++E A EIA RSRGTPRIA RLLRRVRD+A+V     I  ++A
Sbjct: 219 ELSLIVQRTAQLLQTPMSEEGAIEIARRSRGTPRIANRLLRRVRDYAQVKKMGVINPDVA 278

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
             AL    +D  G D  D   L+++   F GGPVG+E ++A   E    IE++ EPY++Q
Sbjct: 279 AEALEVFNVDPAGLDWTDRLVLSVMIEQFQGGPVGLEAVAAATGEDAQTIEEVYEPYLLQ 338

Query: 307 QGFIQRTPRGRLLMPIAWQHLGI 329
            G++ RTPRGR+    A +HLG 
Sbjct: 339 IGYLHRTPRGRVATDAARKHLGY 361


>gi|297566961|ref|YP_003685933.1| Holliday junction DNA helicase RuvB [Meiothermus silvanus DSM 9946]
 gi|296851410|gb|ADH64425.1| Holliday junction DNA helicase RuvB [Meiothermus silvanus DSM 9946]
          Length = 326

 Score =  342 bits (876), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 174/312 (55%), Positives = 226/312 (72%), Gaps = 1/312 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ LE++ GQ      L V+++AAK R E LDH+L  GPPGLGKTTLA V+A ELGVN
Sbjct: 7   LRPKRLEDYVGQRRLKEKLAVYLQAAKNRGEPLDHMLLFGPPGLGKTTLAHVIANELGVN 66

Query: 82  FRSTSGPVIAKAGDLAALLTN-LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
            R TSGP I K GDLAA++TN +E+ D+LFIDEIHRLS   EE LYPAMEDF++D+++G+
Sbjct: 67  IRVTSGPAIEKPGDLAAIVTNSIEEGDILFIDEIHRLSRAAEEHLYPAMEDFKIDIVIGQ 126

Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
           GP+AR+++++L RFTLI ATTR GL++ PL+ RFGI   L FY  E+L   V R A L G
Sbjct: 127 GPAARTLRLDLPRFTLIGATTRPGLISGPLRSRFGIIEHLEFYTEEELAQGVMRDAALIG 186

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGF 260
           LA+T+EAA EI  RSRGT RIA RL RRVRD+AEVA   T+T E A  AL  L +D MG 
Sbjct: 187 LAITEEAAHEIGRRSRGTMRIAKRLFRRVRDYAEVAGEDTVTLERAREALDALGLDSMGL 246

Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320
           ++ D   L  + + FGGGPVG++T++  LSE    +E++ EP++IQ GF++RTPRGR+  
Sbjct: 247 ERRDRVILETLLQRFGGGPVGLDTLATALSEDPATLEEVHEPFLIQLGFLKRTPRGRVAT 306

Query: 321 PIAWQHLGIDIP 332
             A+ HLG  +P
Sbjct: 307 ERAYHHLGYPLP 318


>gi|76798796|ref|ZP_00781010.1| Holliday junction DNA helicase RuvB [Streptococcus agalactiae
           18RS21]
 gi|76585858|gb|EAO62402.1| Holliday junction DNA helicase RuvB [Streptococcus agalactiae
           18RS21]
          Length = 318

 Score =  342 bits (876), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 166/312 (53%), Positives = 218/312 (69%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              LRP+ L E+ GQ +    LK+FIEAAK R E+LDHVL  GPPGLGKTT+A V+A EL
Sbjct: 3   ERTLRPQYLREYIGQDKVKDQLKIFIEAAKLRDESLDHVLLFGPPGLGKTTMAFVIANEL 62

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138
           GVN + TSGP I K+GDL A+L +LE  DVLFIDEIHR+ + VEE+LY AMEDF +D+M+
Sbjct: 63  GVNLKQTSGPAIEKSGDLVAILNDLEPGDVLFIDEIHRMPMAVEEVLYSAMEDFYIDIMI 122

Query: 139 GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKL 198
           G G ++RSV ++L  FTLI ATTR G+L+NPL+ RFGI   + +YE  DL  I++R A +
Sbjct: 123 GAGETSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYEENDLTEIIERTADI 182

Query: 199 TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKM 258
             + +T EAA E+A RSRGTPRIA RLL+RVRD+A++     I   I D AL  L +D  
Sbjct: 183 FEMKITYEAASELARRSRGTPRIANRLLKRVRDYAQIMGDGLIDDNITDKALTMLDVDHE 242

Query: 259 GFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRL 318
           G D +D + L  +   + GGPVG+ T+S  ++E RD +ED+ EPY+IQ+GFI RT  GR+
Sbjct: 243 GLDYVDQKILRTMIEMYNGGPVGLGTLSVNIAEERDTVEDMYEPYLIQKGFIMRTRTGRV 302

Query: 319 LMPIAWQHLGID 330
               A++HLG  
Sbjct: 303 ATVKAYEHLGYQ 314


>gi|327394172|dbj|BAK11594.1| Holliday junction DNA helicase RuvB [Pantoea ananatis AJ13355]
          Length = 304

 Score =  342 bits (876), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 178/286 (62%), Positives = 224/286 (78%)

Query: 45  EAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE 104
            AA+ R +ALDH+L  GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE
Sbjct: 16  RAAQLRGDALDHLLIFGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLE 75

Query: 105 DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164
             DVLFIDEIHRLS +VEE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTLI ATTR G
Sbjct: 76  PHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAG 135

Query: 165 LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGR 224
            LT+PL+DRFGI  RL FY+++DL+ IV R A   GLA+++EAA EIA RSRGTPRIA R
Sbjct: 136 SLTSPLRDRFGIVQRLEFYQVKDLQHIVGRSAACLGLALSEEAALEIARRSRGTPRIANR 195

Query: 225 LLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIET 284
           LLRRVRDFAEV     ++ +++  AL  L +D  GFD +D + L  I   F GGPVG++ 
Sbjct: 196 LLRRVRDFAEVRANGVLSGDVSVTALDMLNVDSEGFDYMDRKLLLAIIDKFTGGPVGLDN 255

Query: 285 ISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           ++A + E R+ IED+IEP++IQQGFIQRTPRGR+    A++H GI 
Sbjct: 256 LAAAIGEERETIEDVIEPFLIQQGFIQRTPRGRMATQHAYRHFGIT 301


>gi|318057101|ref|ZP_07975824.1| Holliday junction DNA helicase RuvB [Streptomyces sp. SA3_actG]
          Length = 356

 Score =  342 bits (876), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 159/329 (48%), Positives = 221/329 (67%), Gaps = 1/329 (0%)

Query: 6   GLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
            L+      ED A  + LRP+ L+EF GQ +    L + ++AA+AR    DHVL  G PG
Sbjct: 17  RLVDAGADTEDTAVEAALRPKDLDEFIGQEKVREQLDLVLKAARARGATADHVLLSGAPG 76

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTL+ ++A E+    R TSGP I  AGDLAA+L++L++ +VLF+DEIHR+S   EE+
Sbjct: 77  LGKTTLSMIIAAEMAAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEM 136

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LY AMEDF++D++VG+GP A ++ ++L  FTL+ ATTR GLL  PL+DRFG    + FY 
Sbjct: 137 LYMAMEDFRVDVIVGKGPGATAIPLDLPPFTLVGATTRAGLLPPPLRDRFGFTAHMEFYA 196

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
             +L+ ++ R A+L  +A+    A EIA RSRGTPRIA RLLRRVRD+A+V     IT E
Sbjct: 197 PAELERVIHRSARLLDVAIDAAGAAEIAGRSRGTPRIANRLLRRVRDYAQVKADGHITVE 256

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           IA AAL    +D  G D+LD   L  + + F GGPVG+ T+S  + E R+ +E++ EP++
Sbjct: 257 IASAALGVYEVDARGLDRLDRAVLEALLKLFSGGPVGLSTLSVAVGEERETVEEVAEPFL 316

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +++GF+ RTPRGR+  P AW HLG+  P 
Sbjct: 317 VREGFLARTPRGRVATPAAWAHLGLAPPQ 345


>gi|126207772|ref|YP_001052997.1| Holliday junction DNA helicase RuvB [Actinobacillus
           pleuropneumoniae L20]
 gi|165975739|ref|YP_001651332.1| Holliday junction DNA helicase RuvB [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|126096564|gb|ABN73392.1| holliday junction ATP-dependent DNA helicase RuvB [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|165875840|gb|ABY68888.1| Holliday junction DNA helicase [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
          Length = 294

 Score =  342 bits (876), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 177/291 (60%), Positives = 226/291 (77%)

Query: 40  LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAAL 99
           +++FI+AAK R EALDH+L  GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+
Sbjct: 1   MEIFIKAAKLRDEALDHLLIFGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAAM 60

Query: 100 LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA 159
           LTNLE  DVLFIDEIHRLS  +EE+LYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ A
Sbjct: 61  LTNLEPYDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGA 120

Query: 160 TTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTP 219
           TTR G LT+PL+DRFGI  RL FY ++DL +IV+R A    L ++ + A E+A RSRGTP
Sbjct: 121 TTRAGSLTSPLRDRFGIVQRLEFYSVDDLTSIVKRSADCLNLNLSPDGAYEVARRSRGTP 180

Query: 220 RIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGP 279
           RIA RLLRRVRD+A+V +   IT +IA  AL  L +D  GFD +D++ L  I   F GGP
Sbjct: 181 RIANRLLRRVRDYADVRNNGVITSDIAKQALAMLDVDSEGFDFMDIKLLQAIVERFDGGP 240

Query: 280 VGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           VG++ ++A + E RD IED++EPY+IQQGF+QRTPRGR+     + HLGI 
Sbjct: 241 VGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTPRGRIATSRTYAHLGIA 291


>gi|21909568|ref|NP_663836.1| Holliday junction DNA helicase RuvB [Streptococcus pyogenes
           MGAS315]
 gi|28894945|ref|NP_801295.1| Holliday junction DNA helicase RuvB [Streptococcus pyogenes SSI-1]
 gi|25009239|sp|Q8K8X8|RUVB_STRP3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|97190363|sp|Q48VY1|RUVB_STRPM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|21903749|gb|AAM78639.1| putative Holliday junction DNA helicase subunit B [Streptococcus
           pyogenes MGAS315]
 gi|28810190|dbj|BAC63128.1| putative Holliday junction DNA helicase, subunit B [Streptococcus
           pyogenes SSI-1]
          Length = 332

 Score =  342 bits (876), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 161/327 (49%), Positives = 224/327 (68%), Gaps = 1/327 (0%)

Query: 6   GLLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
            +L  +V   E+     LRP+ L E+ GQ +      +FIEAAK R E+LDHVL  GPPG
Sbjct: 3   RILDNDVMGNEEFSDRTLRPQYLHEYIGQDKVKEQFAIFIEAAKRRDESLDHVLLFGPPG 62

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTT+A V+A ELGVN + TSGP + KAGDL A+L  LE  D+LFIDEIHR+ + VEE+
Sbjct: 63  LGKTTMAFVIANELGVNLKQTSGPAVEKAGDLVAILNELEPGDILFIDEIHRMPMSVEEV 122

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LY AMEDF +D+M+G G ++RS+ ++L  FTLI ATTR G+L+NPL+ RFGI   + +Y+
Sbjct: 123 LYSAMEDFYIDIMIGAGDTSRSIHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYQ 182

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            +DL  IV+R A +  + +  EAA ++A RSRGTPRIA RLL+RVRD+A++     IT +
Sbjct: 183 EKDLTEIVERTATIFEIKIDHEAARKLACRSRGTPRIANRLLKRVRDYAQIIGDGIITAQ 242

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           I D AL  L +D+ G D +D + L  +   + GGPVG+ T+S  ++E R+ +E++ EPY+
Sbjct: 243 ITDRALTMLDVDREGLDYIDQKILRTMIEMYQGGPVGLGTLSVNIAEERNTVEEMYEPYL 302

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           IQ+GF+ RT  GR+    A++HLG   
Sbjct: 303 IQKGFLMRTRTGRVATQKAYRHLGYPY 329


>gi|312880161|ref|ZP_07739961.1| Holliday junction DNA helicase subunit RuvB [Aminomonas paucivorans
           DSM 12260]
 gi|310783452|gb|EFQ23850.1| Holliday junction DNA helicase subunit RuvB [Aminomonas paucivorans
           DSM 12260]
          Length = 353

 Score =  341 bits (875), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 167/334 (50%), Positives = 230/334 (68%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           +M+     +    +++ D   LRP TL+ F GQ      L++F+ A++ R E LDH LF 
Sbjct: 8   LMETLRQGNGTPRKDEEDHLSLRPETLDSFIGQDSLKEKLRIFVAASRQRGEPLDHTLFY 67

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++ARE+G   R T+GP + +AGDLAA+L+NL+  DVLFIDEIHRL + 
Sbjct: 68  GPPGLGKTTLASIIAREMGGQLRITTGPALERAGDLAAILSNLQPHDVLFIDEIHRLPVT 127

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILYPAMED+ L ++VG+GP ARSV++ L RFTL+ ATTR+GL+T+PL+ RFGI  +L
Sbjct: 128 VEEILYPAMEDYNLCIVVGKGPLARSVRLQLPRFTLVGATTRLGLMTSPLRARFGIVEQL 187

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           + Y+  DL  IV RGA++ G+ + ++A+ EI  RSRGTPR+A RLLRRVRD A V+    
Sbjct: 188 DLYDPRDLTKIVTRGAEVLGVQIEEDASLEIGRRSRGTPRVALRLLRRVRDVAAVSGEAG 247

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I R +A +AL  L +D  G D  D + L  +   F GGPVG+ T++A L+E    IED+ 
Sbjct: 248 IRRTVACSALDMLGVDPEGLDDGDRKLLRAVVELFDGGPVGLSTLAAALNEDAQTIEDIY 307

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           EP++IQ+GF++RTPRGR      + +LG +   R
Sbjct: 308 EPFLIQKGFLERTPRGRKATRGTFAYLGFEPSSR 341


>gi|145224406|ref|YP_001135084.1| Holliday junction DNA helicase B [Mycobacterium gilvum PYR-GCK]
 gi|315444738|ref|YP_004077617.1| Holliday junction DNA helicase subunit RuvB [Mycobacterium sp.
           Spyr1]
 gi|189046038|sp|A4TBQ5|RUVB_MYCGI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|145216892|gb|ABP46296.1| Holliday junction DNA helicase subunit RuvB [Mycobacterium gilvum
           PYR-GCK]
 gi|315263041|gb|ADT99782.1| Holliday junction DNA helicase subunit RuvB [Mycobacterium sp.
           Spyr1]
          Length = 357

 Score =  341 bits (875), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 162/329 (49%), Positives = 228/329 (69%), Gaps = 1/329 (0%)

Query: 5   EGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E  ++  ++  + DI + LRPR+L EF GQ      L++ +E AK R    DH+L  GPP
Sbjct: 16  EREVTPALTVGEGDIDASLRPRSLGEFIGQPRVREQLQLVLEGAKNRGGTPDHILLSGPP 75

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKT+LA ++A ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++   EE
Sbjct: 76  GLGKTSLAMIIAAELGSSLRVTSGPALERAGDLAAMLSNLIEGDVLFIDEIHRIARPAEE 135

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LY AMEDF++D++VG+GP A S+ + ++ FTL+ ATTR G LT PL+DRFG    ++FY
Sbjct: 136 MLYLAMEDFRVDVVVGKGPGATSIPLEVAPFTLVGATTRSGALTGPLRDRFGFTAHMDFY 195

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           E  +L+ ++ R A + G+ +  EA  EIA RSRGTPRIA RLLRRVRD+AEV     ITR
Sbjct: 196 EPAELERVLARSAGILGIELGAEAGAEIARRSRGTPRIANRLLRRVRDYAEVRADGVITR 255

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           +IA  AL    +D++G D+LD   L+ + R+FGGGPVG+ T++  + E    +E++ EP+
Sbjct: 256 DIAKYALEVYDVDELGLDRLDRAVLSALTRSFGGGPVGVSTLAVAVGEEATTVEEVCEPF 315

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           +++ G I RTPRGR+    AW+HLG+  P
Sbjct: 316 LVRAGMIARTPRGRVATAQAWKHLGMTPP 344


>gi|269126345|ref|YP_003299715.1| Holliday junction DNA helicase RuvB [Thermomonospora curvata DSM
           43183]
 gi|268311303|gb|ACY97677.1| Holliday junction DNA helicase RuvB [Thermomonospora curvata DSM
           43183]
          Length = 353

 Score =  341 bits (875), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 162/335 (48%), Positives = 228/335 (68%), Gaps = 3/335 (0%)

Query: 1   MMDREGLLSRNVS---QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M D + L+S       +E A  + LRP+ L++F GQ      L + + +A  R    DHV
Sbjct: 1   MSDHDRLVSPRAGADGEERAIEAALRPKRLDDFVGQQRVREQLSLVLHSALRRGRTPDHV 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  G PGLGKTTLA ++A ELG   R TSGP I +AGDLAA+L+ L + +VLF+DEIHR+
Sbjct: 61  LLSGGPGLGKTTLAMIIAEELGKPLRITSGPAIERAGDLAAVLSTLSEGEVLFLDEIHRM 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           +   EE+LY AMEDF++D++VG+GP A ++ ++++ FTL+ ATTR G+L  PL+DRFG  
Sbjct: 121 ARPAEEMLYMAMEDFRVDVVVGKGPGATAIPLDIAPFTLVGATTRAGMLPGPLRDRFGFV 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
             ++FYE  +L+ I++R A+L G+ + D+ A EIA RSRGTPRIA RLLRRVRD+AEV  
Sbjct: 181 AHMDFYEPAELEIIIRRSARLLGVRIEDDGAAEIAARSRGTPRIANRLLRRVRDYAEVRA 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
              ITRE+A AAL    +D+ G D+LD   L  + R FGGGPVG+ T++  + E  + +E
Sbjct: 241 DGVITRELARAALTLYEVDERGLDRLDRAVLGALLRKFGGGPVGLSTLAVSVGEEPETVE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
            + EP++++QG + RTPRGR+  P AW+HLG+  P
Sbjct: 301 VVAEPFLVRQGLLARTPRGRIATPAAWRHLGLTPP 335


>gi|313683108|ref|YP_004060846.1| holliday junction DNA helicase subunit ruvb [Sulfuricurvum kujiense
           DSM 16994]
 gi|313155968|gb|ADR34646.1| Holliday junction DNA helicase subunit RuvB [Sulfuricurvum kujiense
           DSM 16994]
          Length = 335

 Score =  341 bits (875), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 170/330 (51%), Positives = 234/330 (70%), Gaps = 2/330 (0%)

Query: 5   EGLLS-RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E ++     + E+   + LRP    ++ GQ +   NL VFIEA+  R EALDHVLF GPP
Sbjct: 2   ERIVEIEKFNAEEVTETSLRPSAWNDYIGQEQIKKNLGVFIEASSKRGEALDHVLFYGPP 61

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++A E+G N + T+ P+I K+GDLAA+LTNLE+ D+LFIDEIHRLS  VEE
Sbjct: 62  GLGKTTLALIIANEMGSNIKVTAAPMIEKSGDLAAILTNLEEGDILFIDEIHRLSPAVEE 121

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILYP+MEDF+LD+++G GP+A++VKI+L RFTLI ATTR G+L+NPL+DRFG+  R+ FY
Sbjct: 122 ILYPSMEDFRLDIIIGSGPAAQTVKIDLPRFTLIGATTRAGMLSNPLRDRFGMNFRMQFY 181

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
             ++L +I+ + A   G  +  +AA EIA RSRGTPRIA RLL+RVRDFA+VA+  TI  
Sbjct: 182 TPDELCSIITQAAIKLGKNIDKDAANEIAKRSRGTPRIALRLLKRVRDFADVANESTILH 241

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           E +  AL +L I+  GFD++D+R L ++     G  +G+ TI+A LSE    IED++EPY
Sbjct: 242 ERSRYALDQLGINANGFDEMDIRLLKLLMEA-KGRAMGLSTIAAALSEDEGTIEDVLEPY 300

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           ++  G+++RT RGR+  P  ++ L    P 
Sbjct: 301 LLANGYLERTARGRVATPKTYELLKFGTPQ 330


>gi|172046219|sp|Q1JP25|RUVB_STRPC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|172046744|sp|Q1JE69|RUVB_STRPB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
          Length = 332

 Score =  341 bits (875), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 161/327 (49%), Positives = 224/327 (68%), Gaps = 1/327 (0%)

Query: 6   GLLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
            +L  +V   E+     LRP+ L E+ GQ +      +FIEAAK R E+LDHVL  GPPG
Sbjct: 3   RILDNDVMGNEEFSDRTLRPQYLREYIGQDKVKEQFAIFIEAAKRRDESLDHVLLFGPPG 62

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTT+A V+A ELGVN + TSGP + KAGDL A+L  LE  D+LFIDEIHR+ + VEE+
Sbjct: 63  LGKTTMAFVIANELGVNLKQTSGPAVEKAGDLVAILNELEPGDILFIDEIHRMPMSVEEV 122

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LY AMEDF +D+M+G G ++RS+ ++L  FTLI ATTR G+L+NPL+ RFGI   + +Y+
Sbjct: 123 LYSAMEDFYIDIMIGAGDTSRSIHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYQ 182

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            +DL  IV+R A +  + +  EAA ++A RSRGTPRIA RLL+RVRD+A++     IT +
Sbjct: 183 EKDLTEIVERTATIFEIKIDHEAARKLACRSRGTPRIANRLLKRVRDYAQIIGDGIITAQ 242

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           I D AL  L +D+ G D +D + L  +   + GGPVG+ T+S  ++E R+ +E++ EPY+
Sbjct: 243 ITDRALTMLDVDREGLDYIDQKILRTMIEMYQGGPVGLGTLSVNIAEERNTVEEMYEPYL 302

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           IQ+GF+ RT  GR+    A++HLG   
Sbjct: 303 IQKGFLMRTRTGRVATQKAYRHLGYPY 329


>gi|77409490|ref|ZP_00786180.1| Holliday junction DNA helicase RuvB [Streptococcus agalactiae COH1]
 gi|77171893|gb|EAO75072.1| Holliday junction DNA helicase RuvB [Streptococcus agalactiae COH1]
          Length = 318

 Score =  341 bits (875), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 166/312 (53%), Positives = 218/312 (69%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              LRP+ L E+ GQ +    LK+FIEAAK R E+LDHVL  GPPGLGKTT+A V+A EL
Sbjct: 3   ERTLRPQYLREYIGQDKVKDQLKIFIEAAKLRDESLDHVLLFGPPGLGKTTMAFVIANEL 62

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138
           GVN + TSGP I K+GDL A+L +LE  DVLFIDEIHR+ + VEE+LY AMEDF +D+M+
Sbjct: 63  GVNLKQTSGPAIEKSGDLVAILNDLEPGDVLFIDEIHRMPMAVEEVLYSAMEDFYIDIMI 122

Query: 139 GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKL 198
           G G ++RSV ++L  FTLI ATTR G+L+NPL+ RFGI   + +YE  DL  I++R A +
Sbjct: 123 GAGETSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYEENDLTEIIERTADI 182

Query: 199 TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKM 258
             + +T EAA E+A RSRGTPRIA RLL+RVRD+A++     I   I D AL  L +D  
Sbjct: 183 FEMKITYEAASELARRSRGTPRIANRLLKRVRDYAQIMGDGLIDDNITDKALTMLDVDHE 242

Query: 259 GFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRL 318
           G D +D + L  +   + GGPVG+ T+S  ++E RD +ED+ EPY+IQ+GFI RT  GR+
Sbjct: 243 GLDYVDQKILRTMIEMYNGGPVGLGTLSVNITEERDTVEDMYEPYLIQKGFIMRTRTGRV 302

Query: 319 LMPIAWQHLGID 330
               A++HLG  
Sbjct: 303 ATDKAYEHLGYQ 314


>gi|325672615|ref|ZP_08152311.1| crossover junction ATP-dependent DNA helicase RuvB [Rhodococcus
           equi ATCC 33707]
 gi|325556492|gb|EGD26158.1| crossover junction ATP-dependent DNA helicase RuvB [Rhodococcus
           equi ATCC 33707]
          Length = 377

 Score =  341 bits (875), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 161/329 (48%), Positives = 223/329 (67%), Gaps = 1/329 (0%)

Query: 5   EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E  ++ N    D ++   LRP+ L +F GQ      L++ +  AK R    DHVL  GPP
Sbjct: 19  ESAVTANFVSSDGEVEASLRPKNLSDFIGQPRVREQLQLVLTGAKLRGGTPDHVLLSGPP 78

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKT++A ++A ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++   EE
Sbjct: 79  GLGKTSMAMIIATELGTSLRLTSGPALERAGDLAAMLSNLVEGDVLFIDEIHRMARPAEE 138

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LY AMEDF++D++VG+GP A S+ + ++ FTL+ ATTR G LT PL+DRFG    ++FY
Sbjct: 139 MLYLAMEDFRVDVVVGKGPGATSIPLEVAPFTLVGATTRSGALTGPLRDRFGFTAHMDFY 198

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           E  +L+ I+ R A + G+ + +EA  EIA RSRGTPRIA RLLRRVRD+AEV     ITR
Sbjct: 199 EPHELQLILLRSAGILGIELGEEAGAEIAGRSRGTPRIANRLLRRVRDYAEVRADGIITR 258

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           EIA AAL    +D++G D+LD   L  + R+FGGGPVG+ T++  + E    +E++ EP+
Sbjct: 259 EIAQAALAVYDVDQLGLDRLDRAVLGALVRSFGGGPVGVSTLAVAVGEEPSTVEEVCEPF 318

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           +++ G I RTPRGR+    AW  LG+  P
Sbjct: 319 LVRAGMIARTPRGRVATAAAWAQLGLTPP 347


>gi|253583196|ref|ZP_04860394.1| holliday junction DNA helicase ruvB [Fusobacterium varium ATCC
           27725]
 gi|251833768|gb|EES62331.1| holliday junction DNA helicase ruvB [Fusobacterium varium ATCC
           27725]
          Length = 340

 Score =  341 bits (874), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 164/324 (50%), Positives = 231/324 (71%), Gaps = 1/324 (0%)

Query: 5   EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           + +++ +  + D +I   LRPR  +++ GQV     + + IEAAK R  ++DH+L  GPP
Sbjct: 2   DRVVTTSEMENDIEIQKTLRPRCFKDYIGQVSLKEKMSISIEAAKKRGGSIDHILLYGPP 61

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA V+A E+G N + TSGPV+ +AGDLAA+LT+LE+ D+LFIDEIHRL+  VEE
Sbjct: 62  GLGKTTLAGVIATEMGANLKITSGPVLERAGDLAAILTSLEENDILFIDEIHRLNNTVEE 121

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILYPAMED +LD+++G+GPSARS++I L  FTLI ATTR GLL++PL+DRFG+  R+ +Y
Sbjct: 122 ILYPAMEDKELDIIIGKGPSARSIRIELPSFTLIGATTRAGLLSSPLRDRFGVTHRMEYY 181

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
             E++  I+ RG  + G+ +  + A E+A RSRGTPRIA RLL+RVRDF E+     I R
Sbjct: 182 SEEEITDIILRGGNILGVKIEIDGAKELASRSRGTPRIANRLLKRVRDFCEIRGNGVIDR 241

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           EI+  AL  L ID  G D LD   +  I  N+GGGPVGI+T+S  L E +  +E++ EPY
Sbjct: 242 EISLKALEILGIDSAGLDDLDRDIVNAIIDNYGGGPVGIDTLSLMLGEDKRTLEEVYEPY 301

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHL 327
           +++ G+++RT RGR++   A++H 
Sbjct: 302 LVKIGYLKRTNRGRMVTEKAYEHF 325


>gi|297170980|gb|ADI21995.1| holliday junction resolvasome, helicase subunit [uncultured
           myxobacterium HF0200_01L06]
          Length = 346

 Score =  341 bits (874), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 192/330 (58%), Positives = 240/330 (72%), Gaps = 2/330 (0%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           +R  L   ++ +E+     LRPR+LEE  GQ     NL VF+ AA+ R EA+DHVLF GP
Sbjct: 7   ERGSLSGGSLPEEERAEETLRPRSLEEMVGQDRLRENLSVFVRAAREREEAMDHVLFYGP 66

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKT+LA++VARE+   FR+TSGP I +AGDLAALL+NL+  DVLFIDEIHRLS  +E
Sbjct: 67  PGLGKTSLARIVAREMEAQFRATSGPSIERAGDLAALLSNLQPGDVLFIDEIHRLSPAIE 126

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILYPAMEDF LDLM+GEGPSARS+++ L RFTL+ ATTR GLLT+PL+DRFG   RL +
Sbjct: 127 EILYPAMEDFALDLMIGEGPSARSIRLELPRFTLVGATTRAGLLTSPLRDRFGWSARLEY 186

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA--KT 240
           Y   DL+ IV R A L G+AV  EAA EIA RSRGTPRIA RLLRRVRDFAEV     + 
Sbjct: 187 YPASDLERIVSRSAGLLGVAVESEAAREIAGRSRGTPRIANRLLRRVRDFAEVEGESGEA 246

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           ++R+ A  AL RL +D+ GFD LD   +  +   F  GPVG+ET+SA + E +  IED++
Sbjct: 247 VSRDRARDALRRLEVDEAGFDGLDRALMRTLIDKFDSGPVGLETLSAAVGEDKGTIEDVV 306

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           EPY+I QGF+ RTPRGR+    A +H G++
Sbjct: 307 EPYLIFQGFLDRTPRGRVATRRAREHFGVE 336


>gi|254822006|ref|ZP_05227007.1| Holliday junction DNA helicase RuvB [Mycobacterium intracellulare
           ATCC 13950]
          Length = 351

 Score =  341 bits (874), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 164/330 (49%), Positives = 229/330 (69%), Gaps = 1/330 (0%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           DR+   +    + D D+S LRPR+L EF GQ      L++ IE AK R    DH+L  GP
Sbjct: 10  DRDVSGALAPGEGDIDVS-LRPRSLREFIGQPRVREQLQLVIEGAKNRGGTPDHILLSGP 68

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKT+LA ++A ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++   E
Sbjct: 69  PGLGKTSLAMIIAAELGSSLRLTSGPALERAGDLAAMLSNLVEHDVLFIDEIHRIARPAE 128

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LY AMEDF++D++VG+GP A S+ + ++ FTL+ ATTR G LT PL+DRFG    ++F
Sbjct: 129 EMLYLAMEDFRVDVVVGKGPGATSIPLEVAPFTLVGATTRSGALTGPLRDRFGFTAHMDF 188

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           YE  +L+ ++ R A + G+ +  +AA EIA RSRGTPRIA RLLRRVRDFAEV     IT
Sbjct: 189 YEPAELERVLARSAGILGIELGGDAAEEIARRSRGTPRIANRLLRRVRDFAEVRADGVIT 248

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           R++A +AL    +D++G D+LD   L+ + R+FGGGPVG+ T++  + E    +E++ EP
Sbjct: 249 RDVAKSALAVYDVDELGLDRLDRAVLSALTRSFGGGPVGVSTLAVAVGEEATTVEEVCEP 308

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++++ G + RTPRGR+    AW HLG+  P
Sbjct: 309 FLVRAGMVARTPRGRVATAQAWTHLGMAPP 338


>gi|86740077|ref|YP_480477.1| Holliday junction DNA helicase RuvB [Frankia sp. CcI3]
 gi|123751318|sp|Q2JD94|RUVB_FRASC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|86566939|gb|ABD10748.1| Holliday junction DNA helicase subunit RuvB [Frankia sp. CcI3]
          Length = 348

 Score =  341 bits (874), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 165/331 (49%), Positives = 227/331 (68%), Gaps = 1/331 (0%)

Query: 2   MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M  +GL+S   S E+      LRPRTL EF GQ +    L + +E A+AR    DHVL  
Sbjct: 1   MSDDGLVSAAASPEERAFEAGLRPRTLAEFVGQRKVREQLTIMLEGARARGRPPDHVLLS 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKT+LA ++A+EL V  R TSGP I +AGDL A+LT L   +VLF+DEIHR++  
Sbjct: 61  GPPGLGKTSLAMIMAQELEVPLRMTSGPAIERAGDLVAILTALSPGEVLFLDEIHRIARP 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            EE+LY AMEDF++D+++G+GP A ++ +++S FTL+ ATTR GLLT PL+DRFG    L
Sbjct: 121 AEELLYAAMEDFRVDVILGKGPGATAIPLDVSPFTLVGATTRSGLLTGPLRDRFGFTAHL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           +FY+ ++L  ++ R A L G+ +T E A E+A RSRGTPRIA RLLRRVRD+AEV     
Sbjct: 181 DFYDADELARVLTRSAGLLGVTLTAEGAAEVAGRSRGTPRIANRLLRRVRDYAEVRADGV 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +TREIA AAL    +D +G D+LD   L  +   FGGGPVG+ T++  + E  + +ED+ 
Sbjct: 241 VTREIAQAALRIYDVDGLGLDRLDRAVLEALVTRFGGGPVGLTTLAVSVGEEPETVEDVA 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           EP++++ G + RT RGR+  P A++HLG+D 
Sbjct: 301 EPFLLRAGLLIRTARGRMATPAAFEHLGLDP 331


>gi|319442164|ref|ZP_07991320.1| Holliday junction DNA helicase RuvB [Corynebacterium variabile DSM
           44702]
          Length = 365

 Score =  341 bits (874), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 163/329 (49%), Positives = 225/329 (68%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           + L  R +  +D     LRPR+L EF GQ +    L + +  A+AR    DHVL  GPPG
Sbjct: 36  DALSDRMLPGDDDSELSLRPRSLTEFIGQPKVRGQLDLVLGGARARGVVPDHVLLAGPPG 95

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTT+A ++A+EL  + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++   EE+
Sbjct: 96  LGKTTMAMIIAQELSTSLRMTSGPALERAGDLAAMLSNLMEGDVLFIDEIHRMARPAEEM 155

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LY AMEDF++D++VG+GP A S+ I L  FTL+ ATTR G+LT PL+DRFG   ++ FY+
Sbjct: 156 LYMAMEDFRIDVIVGKGPGATSIPIELPPFTLVGATTRAGMLTGPLRDRFGFTAQMEFYD 215

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
             DL  +V R A + G+ +T +AA EIA RSRGTPRIA RLLRRVRD+A+V     IT +
Sbjct: 216 TADLTAVVTRAASILGVDITGDAAAEIASRSRGTPRIANRLLRRVRDYADVRADGAITVD 275

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +A AALL   +D++G D+LD   L  + +  GGGPVG+ T++  + E    +E++ EPY+
Sbjct: 276 VARAALLVFDVDELGLDRLDRAVLGSLVKTHGGGPVGVNTLAVAVGEESTTVEEVCEPYL 335

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           ++ G I RT RGR+  P AW+HLG++ P 
Sbjct: 336 VRAGMIARTSRGRVATPSAWRHLGLEPPE 364


>gi|118473727|ref|YP_887264.1| Holliday junction DNA helicase RuvB [Mycobacterium smegmatis str.
           MC2 155]
 gi|171472979|sp|A0QWH6|RUVB_MYCS2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|118175014|gb|ABK75910.1| holliday junction DNA helicase RuvB [Mycobacterium smegmatis str.
           MC2 155]
          Length = 351

 Score =  341 bits (874), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 163/330 (49%), Positives = 229/330 (69%), Gaps = 1/330 (0%)

Query: 4   REGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
            +  +S  ++  + DI + LRPR+L EF GQ      L++ +E AK R    DH+L  GP
Sbjct: 11  EDREVSPALTVGEGDIDASLRPRSLGEFIGQPRVREQLQLVLEGAKKRGGTPDHILLSGP 70

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKT+LA ++A ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++   E
Sbjct: 71  PGLGKTSLAMIIAAELGSSLRVTSGPALERAGDLAAMLSNLVEHDVLFIDEIHRIARPAE 130

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LY AMEDF++D++VG+GP A S+ + ++ FTL+ ATTR G LT PL+DRFG    ++F
Sbjct: 131 EMLYLAMEDFRVDVVVGKGPGATSIPLEVAPFTLVGATTRSGALTGPLRDRFGFTAHMDF 190

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           YE  +L+ ++ R A + G+ +  EA  EIA RSRGTPRIA RLLRRVRDFAEV     IT
Sbjct: 191 YEPVELERVLARSAGILGIELGAEAGAEIARRSRGTPRIANRLLRRVRDFAEVRADGIIT 250

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           R+IA +AL    +D++G D+LD   L+ + R+F GGPVG+ T++  + E    +E++ EP
Sbjct: 251 RDIAKSALEVYDVDELGLDRLDRAVLSALTRSFNGGPVGVSTLAVAVGEEATTVEEVCEP 310

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++++ G I RTPRGR+  P+AW HLG+  P
Sbjct: 311 FLVRAGMIARTPRGRVATPLAWTHLGLQPP 340


>gi|258653555|ref|YP_003202711.1| Holliday junction DNA helicase RuvB [Nakamurella multipartita DSM
           44233]
 gi|258556780|gb|ACV79722.1| Holliday junction DNA helicase RuvB [Nakamurella multipartita DSM
           44233]
          Length = 370

 Score =  341 bits (874), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 157/327 (48%), Positives = 226/327 (69%), Gaps = 1/327 (0%)

Query: 5   EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           EG+++      D+D+   LRPR+++EF GQ +    L++ +  AK R    DHVL  GPP
Sbjct: 23  EGVVTPGQVPGDSDVEASLRPRSMDEFVGQEKVREQLQLVLAGAKLRGTPPDHVLLAGPP 82

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKT+L+ ++A ELG   R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++   EE
Sbjct: 83  GLGKTSLSMIIAAELGAALRLTSGPALERAGDLAAILSNLVEGDVLFIDEIHRIARPAEE 142

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LY AMEDF++D+MVG+GP A S+ ++++ FTL+ ATTR G LT PL+DRFG    + FY
Sbjct: 143 MLYLAMEDFRVDVMVGKGPGATSIPLDIAPFTLVGATTRSGQLTGPLRDRFGFTAHMEFY 202

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
             ++L  ++ R A + G+ +  + A EIA RSRGTPRIA RLLRRVRD+A+V     IT 
Sbjct: 203 SADELTIVISRSAAILGIELRPDGAAEIARRSRGTPRIANRLLRRVRDYAQVRADGAITL 262

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           ++A AAL    +D+MG D+LD   L+++ R+FGGGPVG+ T++  + E    +E++ EP+
Sbjct: 263 DVARAALAVYDVDEMGLDRLDRAVLSVLCRSFGGGPVGLTTLAVAVGEEPSTVEEVCEPF 322

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGID 330
           +++ G + RT RGR+  P AW HLG+ 
Sbjct: 323 LVRIGMLARTARGRVATPAAWDHLGLA 349


>gi|311742331|ref|ZP_07716140.1| crossover junction ATP-dependent DNA helicase RuvB [Aeromicrobium
           marinum DSM 15272]
 gi|311313959|gb|EFQ83867.1| crossover junction ATP-dependent DNA helicase RuvB [Aeromicrobium
           marinum DSM 15272]
          Length = 351

 Score =  341 bits (874), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 165/332 (49%), Positives = 223/332 (67%), Gaps = 1/332 (0%)

Query: 2   MDREGLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
            D  G+++     ED A  + LRPRTL E  GQ      L + ++AA AR    DHVL  
Sbjct: 6   FDESGVVTAVAGAEDRAFEAALRPRTLTELIGQDRVREQLSLVLDAAIARGSTPDHVLLS 65

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A ++    R TSGP I  AGDLAA+L+ + + DVLFIDEIHR+S  
Sbjct: 66  GPPGLGKTTLAMIIAHQVAAPLRITSGPAIQHAGDLAAILSGIGEGDVLFIDEIHRMSRP 125

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            EE+LY AMEDF++D++VG+GP A ++ + +  FT++ ATTR GLL  PL+DRFG   +L
Sbjct: 126 AEELLYMAMEDFRVDVVVGKGPGATAIPLEIPPFTVVGATTRAGLLPGPLRDRFGFTAQL 185

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           +FY+  DL  IV+R A L  L ++D A  EIA RSRGTPRIA RLLRRVRDFAEV     
Sbjct: 186 DFYDAADLHRIVRRSADLLALDLSDAAGHEIASRSRGTPRIANRLLRRVRDFAEVRTGGV 245

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +    A AAL    +D +G D+LD   LT +  +FGGGPVG+ T++  + E R+ +E++ 
Sbjct: 246 LDEAAARAALDLYEVDAIGLDRLDRAVLTALCSSFGGGPVGLSTLAVAVGEERETVEEVA 305

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EP++++ GF+ RTPRGR+  P AW+HLG+ +P
Sbjct: 306 EPFLVRLGFLARTPRGRVATPAAWRHLGMAVP 337


>gi|315604283|ref|ZP_07879349.1| crossover junction ATP-dependent DNA helicase RuvB [Actinomyces sp.
           oral taxon 180 str. F0310]
 gi|315313989|gb|EFU62040.1| crossover junction ATP-dependent DNA helicase RuvB [Actinomyces sp.
           oral taxon 180 str. F0310]
          Length = 348

 Score =  341 bits (874), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 161/331 (48%), Positives = 220/331 (66%), Gaps = 1/331 (0%)

Query: 3   DREGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           D   +++ +    E A  + LRPR L EF GQ      L++ ++AA+ R+   DHVL  G
Sbjct: 10  DAMRIVAPDAGDLERAAEAALRPRKLSEFVGQRVVRGQLQLVLDAARMRSATPDHVLLAG 69

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+G + R TSGP I  AGDLAA+L+ L++ D+LFIDEIHRL+   
Sbjct: 70  PPGLGKTTLAMIIAAEMGTSLRLTSGPAIQHAGDLAAILSGLQEGDILFIDEIHRLARTA 129

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMEDF++D++VG+GP A S+ + L  FT++ ATTR GLL  PL+DRFG    L 
Sbjct: 130 EEMLYLAMEDFRVDVVVGKGPGATSIPLTLPPFTVVGATTRSGLLPAPLRDRFGFTAHLE 189

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FYE ++L+++V R A L G  +   AA EIA RSRGTPRIA RLLRRV D+A+V     +
Sbjct: 190 FYETDELQSVVTRSASLLGSPIDARAAHEIASRSRGTPRIANRLLRRVVDYAQVHGDGQL 249

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T + A  AL    +D  G D+LD   L  + R F GGPVG+ T+S  + E  + +E + E
Sbjct: 250 TLDAARGALELFEVDPSGLDRLDRAVLEAVCRRFAGGPVGLTTLSVTIGEEAETVETVAE 309

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           PY++++GF+ RT RGR+  P+AW HLG+  P
Sbjct: 310 PYLVREGFLVRTNRGRMATPLAWSHLGLTPP 340


>gi|332298113|ref|YP_004440035.1| Holliday junction ATP-dependent DNA helicase ruvB [Treponema
           brennaborense DSM 12168]
 gi|332181216|gb|AEE16904.1| Holliday junction ATP-dependent DNA helicase ruvB [Treponema
           brennaborense DSM 12168]
          Length = 339

 Score =  341 bits (874), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 163/327 (49%), Positives = 228/327 (69%), Gaps = 1/327 (0%)

Query: 5   EGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
             +L  NV   +D   + LRP+ L +F GQ     NL VFIEAA+ R E+LDH+  +GPP
Sbjct: 2   NDILHANVPFDDDTQDTTLRPQLLRDFLGQTSVKENLSVFIEAARTRRESLDHLFLIGPP 61

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLAQ+ A ELG +F+ TS P + K  DLA +L+ + +R V FIDEIHRL   +EE
Sbjct: 62  GLGKTTLAQITAHELGADFKVTSAPALDKPKDLAGILSTITERTVFFIDEIHRLKPAIEE 121

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LY AMED++LD ++G+G +AR+V+I +  FTL+ ATT+ G++++PL  RFGI  R +FY
Sbjct: 122 MLYIAMEDYELDWVIGQGAAARTVRIPVPHFTLVGATTKAGMVSSPLISRFGIVQRFSFY 181

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           + E+L +I++R A +  + V D+AA  +A  +RGTPR+A R+LRR+RDFA+V    TITR
Sbjct: 182 DAEELASIIRRSAGILNVTVADDAARLMAECARGTPRVANRVLRRMRDFAQVMGDGTITR 241

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           ++A A L RL ID +G ++ D   L  I  NFGGGPVG ET++  + E  D +ED  EPY
Sbjct: 242 QVAAAGLTRLEIDSLGLEKYDREILLSIIENFGGGPVGAETLAISIGESIDTLEDYYEPY 301

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGID 330
           +IQ G IQRTPRGR++   A++HLG++
Sbjct: 302 LIQCGLIQRTPRGRVVTEKAYKHLGLE 328


>gi|182439810|ref|YP_001827529.1| Holliday junction DNA helicase RuvB [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326780474|ref|ZP_08239739.1| Holliday junction ATP-dependent DNA helicase ruvB [Streptomyces cf.
           griseus XylebKG-1]
 gi|238689025|sp|B1W3G4|RUVB_STRGG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|178468326|dbj|BAG22846.1| putative Holliday junction DNA helicase subunit A [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326660807|gb|EGE45653.1| Holliday junction ATP-dependent DNA helicase ruvB [Streptomyces cf.
           griseus XylebKG-1]
          Length = 361

 Score =  340 bits (873), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 159/330 (48%), Positives = 222/330 (67%), Gaps = 1/330 (0%)

Query: 5   EGLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           + L+  +   ED A  + LRP+ LEEF GQ +    L + ++AA+AR    DHVL  G P
Sbjct: 20  DRLVDADADGEDTAVEAALRPKDLEEFVGQEKVREQLDLVLKAARARGATADHVLLSGAP 79

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTL+ ++A E+    R TSGP I  AGDLAA+L++L++ +VLF+DEIHR+S   EE
Sbjct: 80  GLGKTTLSMIIAAEMNAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEE 139

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LY AMEDF++D++VG+GP A ++ + L  FTL+ ATTR GLL  PL+DRFG    + FY
Sbjct: 140 MLYMAMEDFRVDVIVGKGPGATAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTGHMEFY 199

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
              +L+ ++ R A+L  + +  E A EIA RSRGTPRIA RLLRRVRD+A+V    TI R
Sbjct: 200 APAELERVLHRSARLLDVGIDGEGAAEIAGRSRGTPRIANRLLRRVRDYAQVKAEGTIDR 259

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
            IA AAL    +D  G D+LD   L  + + FGGGPVG+ T++  + E R+ +E++ EP+
Sbjct: 260 SIAMAALKVYEVDARGLDRLDRAVLGALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPF 319

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           ++++G + RTPRGR+  P AW HLG+  P 
Sbjct: 320 LVREGLLARTPRGRVATPAAWAHLGLVPPQ 349


>gi|296117350|ref|ZP_06835940.1| Holliday junction DNA helicase RuvB [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295976116|gb|EFG82904.1| Holliday junction DNA helicase RuvB [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 352

 Score =  340 bits (873), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 206/334 (61%), Positives = 254/334 (76%), Gaps = 2/334 (0%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
             E  +     ++D   + LRP+TL++FTGQ  +  NL +FI AA+ R EA+DHVL  GP
Sbjct: 4   HPEREVDAARGEDDIAEASLRPQTLDDFTGQKASRENLAIFIAAARQRGEAMDHVLLHGP 63

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLAQ+VARELGV FR+TSGPVI +AGDLAA+LTNL+ RDVLFIDEIHRL   +E
Sbjct: 64  PGLGKTTLAQIVARELGVGFRATSGPVIQRAGDLAAILTNLQPRDVLFIDEIHRLQPSIE 123

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMEDFQLDL++GEGP+ARSV+I+L+ FTL+AATTR GLL  PL+DRFGIP+RL F
Sbjct: 124 EVLYPAMEDFQLDLIIGEGPAARSVRIDLAPFTLVAATTRAGLLATPLRDRFGIPLRLVF 183

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA--HAKT 240
           Y  E+L+ IV RGA+     +T + A EIA RSRGTPRIAGRLLRRVRDFA VA      
Sbjct: 184 YTPEELRQIVSRGAQKLNFELTHDGAEEIARRSRGTPRIAGRLLRRVRDFAAVARSGHGP 243

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           + R +ADAAL RL +D MG D +D RYL  IA+   GGPVG+ET++A L+E RD IED+I
Sbjct: 244 VDRALADAALARLEVDSMGLDGMDRRYLRRIAQYHHGGPVGVETLAAALAEARDTIEDVI 303

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           EPY+IQ+G + RT RGR+L    W+HLG+  P R
Sbjct: 304 EPYLIQEGLVLRTSRGRMLGERGWRHLGLVPPAR 337


>gi|193213723|ref|YP_001994922.1| Holliday junction DNA helicase RuvB [Chloroherpeton thalassium ATCC
           35110]
 gi|193087200|gb|ACF12475.1| Holliday junction DNA helicase RuvB [Chloroherpeton thalassium ATCC
           35110]
          Length = 342

 Score =  340 bits (873), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 174/330 (52%), Positives = 229/330 (69%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M     L S + + E      +RP    +F GQ +   NLK+FI AA+ R +ALDHVL  
Sbjct: 1   MGKNGALSSASGAGEVQFEEQIRPARFGDFAGQKKIVENLKIFIAAARERDDALDHVLLS 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA +VA E+GV  ++TSGPVI K G+LA LLT+LE  DVLFIDEIHRL+  
Sbjct: 61  GPPGLGKTTLAYIVAHEMGVGIKATSGPVIDKPGNLAGLLTSLEKGDVLFIDEIHRLNPA 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE LY AMEDF+LD+M+  GPSARSV+I +  FTL+ ATTR GLLT PL+ RFGI +RL
Sbjct: 121 VEEYLYSAMEDFKLDIMLDSGPSARSVQIAIPPFTLVGATTRAGLLTAPLRARFGINLRL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           ++Y  E L+ IVQR +++ G+ +  + A EIA RSRGTPRIA RLLRR RDFA+V     
Sbjct: 181 DYYSAELLEKIVQRASRIFGVEIEKDGAFEIARRSRGTPRIANRLLRRARDFAQVNGDLH 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I++ IA   L  L ID+ G D++D R ++ +   + GGPVG+ T++  + E  D IE++ 
Sbjct: 241 ISKNIAKRTLEALEIDEYGLDEMDKRLISALIEKYRGGPVGVATLAMAVGEEPDTIEEVY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           EPY+IQ+G+I RTPRGR+   +A++  GID
Sbjct: 301 EPYLIQEGYIMRTPRGRVATDLAYERFGID 330


>gi|307155176|ref|YP_003890560.1| Holliday junction DNA helicase RuvB [Cyanothece sp. PCC 7822]
 gi|306985404|gb|ADN17285.1| Holliday junction DNA helicase RuvB [Cyanothece sp. PCC 7822]
          Length = 363

 Score =  340 bits (873), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 159/329 (48%), Positives = 222/329 (67%), Gaps = 1/329 (0%)

Query: 3   DREGLLSRNVSQE-DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
               L+ R  ++E +     +RPR L ++ GQ +    LK+ IEAAK R EALDH+L  G
Sbjct: 35  SEHRLVDRTPNEETERAEDSIRPRNLNDYIGQKDLKEVLKIAIEAAKVRKEALDHLLLYG 94

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTT++ ++A E+GVN + T+ P + +  D+  LL NL+  D+LFIDEIHRL+ + 
Sbjct: 95  PPGLGKTTMSLILASEMGVNCKITAAPALERPRDITGLLINLKPGDILFIDEIHRLNRMS 154

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMED +LD+ +G+G +A+   I L+ FTLI ATT++G LT+PL+DRFG+  RL 
Sbjct: 155 EELLYPAMEDHRLDITIGKGQAAKIRSIPLAPFTLIGATTKIGALTSPLRDRFGLIGRLR 214

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FYE ++L  IV R A +  + +TDEAA  IA RSRGTPRIA RLL+RVRD+ +V   + I
Sbjct: 215 FYEADELLLIVLRTATILKVQITDEAALVIARRSRGTPRIANRLLKRVRDYVQVKGLEVI 274

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T+E+A  AL +L +D  G D  D   L+ I   F GGPVG+E ++A   E    IE++ E
Sbjct: 275 TQELAAEALDQLNVDSRGLDWTDRLVLSTIIEQFKGGPVGLEAVAAATGEDAKTIEEVYE 334

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           PY++Q G++ RT RGR+    A+QHLG +
Sbjct: 335 PYLLQIGYLNRTSRGRIATEAAYQHLGYN 363


>gi|72162492|ref|YP_290149.1| Holliday junction DNA helicase RuvB [Thermobifida fusca YX]
 gi|97190406|sp|Q47N43|RUVB_THEFY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|71916224|gb|AAZ56126.1| Holliday junction DNA helicase subunit RuvB [Thermobifida fusca YX]
          Length = 351

 Score =  340 bits (873), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 162/334 (48%), Positives = 226/334 (67%), Gaps = 2/334 (0%)

Query: 1   MMDREG-LLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M + +  L+S   + +D A  S LRPRTL+EF GQ      L + + +A+ R  A DH+L
Sbjct: 1   MSEHDRELVSPEAALDDHAVESALRPRTLDEFVGQDRVREQLSLVLRSAQQRGTAPDHIL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             G PGLGKTTLA ++A ELG   R TSGP I ++GDLAA+L+ L + +VLF+DEIHR++
Sbjct: 61  MSGGPGLGKTTLAMIIAAELGAPLRITSGPAIERSGDLAAVLSTLREGEVLFLDEIHRMA 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
              EE+LY AMEDF++D+MVG+GP A ++ + ++ FTL+ ATTR G+L  PL+DRFG   
Sbjct: 121 RPAEEMLYVAMEDFRVDVMVGKGPGATAIPLEIAPFTLVGATTRAGMLPAPLRDRFGFVA 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
            ++FY  E+L+ I+ R A+L G+ + D+AA EIA RSRGTPRIA RLLRRVRD+A+V   
Sbjct: 181 HMDFYSPEELELILHRSARLLGIELLDDAAAEIARRSRGTPRIANRLLRRVRDYAQVRGD 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             +T E A AAL    +D  G D+LD   L  + R F GGPVG+ T++  + E  + +E 
Sbjct: 241 GRLTLECARAALSLYEVDDEGLDRLDRAVLDALLRRFRGGPVGLSTLAVSVGEEPETVEI 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           + EP++++ GFI RTPRGR+  P AW H+G+  P
Sbjct: 301 VAEPFLVRAGFIARTPRGRVATPQAWAHMGLTPP 334


>gi|281492889|ref|YP_003354869.1| Holliday junction DNA helicase RuvB [Lactococcus lactis subsp.
           lactis KF147]
 gi|38258953|sp|Q9CDL3|RUVB_LACLA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|281376541|gb|ADA66027.1| Holliday junction DNA helicase RuvB [Lactococcus lactis subsp.
           lactis KF147]
 gi|326407800|gb|ADZ64871.1| holliday junction DNA helicase RuvB [Lactococcus lactis subsp.
           lactis CV56]
          Length = 333

 Score =  340 bits (873), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 163/326 (50%), Positives = 224/326 (68%), Gaps = 1/326 (0%)

Query: 5   EGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
             +L++   +ED  I   LRP+   ++ GQ +    L++FI+AAK R E LDHVL  GPP
Sbjct: 2   NDILNKEPMEEDYGIEKSLRPQFFNQYIGQDKVKEQLEIFIKAAKMREEVLDHVLLFGPP 61

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTT+A V+A ELGVN + T+GP I K GDL A+L  LE  DVLFIDEIHR+ + VEE
Sbjct: 62  GLGKTTMAFVIANELGVNIKQTAGPAIEKPGDLVAILNELEPGDVLFIDEIHRMPMQVEE 121

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LY AMEDF +D+M+G G  +RSV ++L  FTL+ ATTR G+L+NPL+ RFGI   + +Y
Sbjct: 122 VLYSAMEDFYIDIMLGSGDGSRSVHLDLPPFTLVGATTRAGMLSNPLRARFGISSHMEYY 181

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           +  DL+ IV+R A +  + V D AA EIA+RSRGTPRIA RLL+RVRDFA++     + +
Sbjct: 182 QERDLEEIVKRTADIFEVEVIDNAALEIALRSRGTPRIANRLLKRVRDFAQIMGDGRVDK 241

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
            I D AL  L +D  G D +D + L  +   + GGPVGI T++  ++E R+ +ED+ EPY
Sbjct: 242 AITDKALSILDVDAAGLDYIDQKILRTMIEMYHGGPVGIGTLAVNIAEDRETVEDMYEPY 301

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGI 329
           +IQ+GF+ RT +GR +   A++HLG 
Sbjct: 302 LIQKGFLMRTKQGRKVTQRAYEHLGY 327


>gi|16331552|ref|NP_442280.1| Holliday junction DNA helicase RuvB [Synechocystis sp. PCC 6803]
 gi|2498877|sp|Q57396|RUVB_SYNY3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|1001619|dbj|BAA10350.1| Holliday junction DNA helicase; RuvB [Synechocystis sp. PCC 6803]
 gi|1256590|gb|AAA96396.1| RuvB [Synechocystis sp. PCC 6803]
          Length = 361

 Score =  340 bits (873), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 149/329 (45%), Positives = 217/329 (65%), Gaps = 3/329 (0%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           +E   S  + Q++A    LRP+ L ++ GQ +    L++ I+AA+ R EA+DH+L  GPP
Sbjct: 27  QERSTSPELEQQEA---SLRPQRLADYIGQRDLKEVLRIAIQAAQGRQEAIDHLLLYGPP 83

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++A E+ V  + T+ P + +  D+  LL  L+  D+LFIDEIHRL+ + EE
Sbjct: 84  GLGKTTLALILAEEMQVRCKITAAPALERPRDITGLLLALQPGDILFIDEIHRLNRLTEE 143

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LYPAMEDF+LD+ +G+G SA+   + L+ FTL+ ATT+VG LT+PL+DRFG+  RL FY
Sbjct: 144 LLYPAMEDFRLDITMGKGQSAKVRSLKLAHFTLVGATTKVGSLTSPLRDRFGLIQRLRFY 203

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           E+++L+ I+ R A +  ++++   A  IAMR+RGTPRIA RLL+RVRD+A+V     I  
Sbjct: 204 EVDELQQIILRTAGILSVSISPTGAEAIAMRARGTPRIANRLLKRVRDYAQVKQQPEIDP 263

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
            +A  AL    +DK G D  D   L  +   F GGP G+E I+A   E    IE++ EPY
Sbjct: 264 ALASEALDLYQVDKRGLDWTDRLVLQTLIEQFQGGPTGLEAIAAATGEDAKTIEEVYEPY 323

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++Q G++ RT RGR+    A++HLG+  P
Sbjct: 324 LLQIGYLARTSRGRIATTAAYEHLGLTPP 352


>gi|295839917|ref|ZP_06826850.1| Holliday junction DNA helicase RuvB [Streptomyces sp. SPB74]
 gi|197696746|gb|EDY43679.1| Holliday junction DNA helicase RuvB [Streptomyces sp. SPB74]
          Length = 356

 Score =  340 bits (873), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 158/329 (48%), Positives = 220/329 (66%), Gaps = 1/329 (0%)

Query: 6   GLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
            L+      ED A  + LRP+ L+EF GQ +    L + ++AA+AR    DHVL  G PG
Sbjct: 17  RLVDAGADTEDTAVEAALRPKDLDEFIGQEKVREQLDLVLKAARARGATADHVLLSGAPG 76

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTL+ ++A E+    R TSGP I  AGDLAA+L++L++ +VLF+DEIHR+S   EE+
Sbjct: 77  LGKTTLSMIIAAEMAAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEM 136

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LY AMEDF++D++VG+GP A ++ + L  FTL+ ATTR GLL  PL+DRFG    + FY 
Sbjct: 137 LYMAMEDFRVDVIVGKGPGATAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTAHMEFYA 196

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
             +L+ ++ R A+L  +A+    A EIA RSRGTPRIA RLLRRVRD+A+V     IT +
Sbjct: 197 PAELERVIHRSAQLLDVAIDPAGAAEIAGRSRGTPRIANRLLRRVRDYAQVKADGHITED 256

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           IA AAL    +D  G D+LD   L  + + FGGGPVG+ T+S  + E R+ +E++ EP++
Sbjct: 257 IASAALGVYEVDARGLDRLDRAVLEALLKLFGGGPVGLSTLSVAVGEERETVEEVAEPFL 316

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +++G + RTPRGR+  P AW HLG+  P 
Sbjct: 317 VREGLLARTPRGRVATPAAWAHLGLAPPQ 345


>gi|117928550|ref|YP_873101.1| Holliday junction DNA helicase RuvB [Acidothermus cellulolyticus
           11B]
 gi|171460815|sp|A0LUK5|RUVB_ACIC1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|117649013|gb|ABK53115.1| Holliday junction DNA helicase subunit RuvB [Acidothermus
           cellulolyticus 11B]
          Length = 367

 Score =  340 bits (872), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 168/320 (52%), Positives = 217/320 (67%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           S E A  + LRPR L+EF GQ      L + ++ AK R    DH+L  GPPGLGKTTLA 
Sbjct: 26  SDEHAVEAALRPRRLDEFVGQQRVRDQLSLILDGAKQRGRPPDHILLSGPPGLGKTTLAM 85

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           +VA EL    R TSGP I  AGDLAA+LT L + +VLF+DEIHR++   EE+LY AMEDF
Sbjct: 86  IVAAELNTPIRVTSGPAIQHAGDLAAVLTQLSEGEVLFLDEIHRMARPAEEMLYLAMEDF 145

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           ++D++VG+GP A  + + L+ FTLI ATTR GLL  PL+DRFG   RL+FYE  DL+ IV
Sbjct: 146 RVDVVVGKGPGASVIPLELAPFTLIGATTRTGLLPGPLRDRFGFTARLDFYEPADLERIV 205

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R A+L  + +T + A EIA RSRGTPRIA RLLRRVRD+AEV     IT E+A AAL  
Sbjct: 206 HRSARLLDVRITPDGAAEIARRSRGTPRIANRLLRRVRDYAEVRADGVITCEVAQAALAV 265

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
             +D+ G D+LD   L  + R FGGGPVG+ T++  + E  + +E++ EP++ + GF+ R
Sbjct: 266 YEVDEHGLDRLDRAVLDALVRRFGGGPVGLGTVAVAVGEEPETVEEVAEPFLFRAGFLIR 325

Query: 313 TPRGRLLMPIAWQHLGIDIP 332
           TPRGR+    AW+HLGI  P
Sbjct: 326 TPRGRMATAAAWRHLGITPP 345


>gi|302541120|ref|ZP_07293462.1| Holliday junction DNA helicase RuvB [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302458738|gb|EFL21831.1| Holliday junction DNA helicase RuvB [Streptomyces himastatinicus
           ATCC 53653]
          Length = 353

 Score =  340 bits (872), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 158/330 (47%), Positives = 222/330 (67%), Gaps = 1/330 (0%)

Query: 6   GLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
            L+  +   +D A  + LRP+ L EF GQ      L + ++AA+ R    DHVL  G PG
Sbjct: 12  RLVGADADGDDQAVEAALRPKDLGEFVGQERVREQLDLVLKAARQRGGTADHVLLSGAPG 71

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTL+ ++A E+G   R TSGP I  AGDLAA+L++L + +VLF+DEIHR+S   EE+
Sbjct: 72  LGKTTLSMIIAAEMGAPIRITSGPAIQHAGDLAAILSSLAEGEVLFLDEIHRMSRPAEEM 131

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LY AMEDF++D++VG+GP A ++ + L  FTL+ ATTR GLL  PL+DRFG    + FY 
Sbjct: 132 LYMAMEDFRVDVIVGKGPGATAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTGHMEFYA 191

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
             +L+ ++ R A+L  + +  E A EIA RSRGTPRIA RLLRRVRD+A+V     ITRE
Sbjct: 192 PAELERVIHRSARLLEVTIEPEGAAEIAGRSRGTPRIANRLLRRVRDYAQVKADGVITRE 251

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           IA +AL    +D  G D+LD   L+ + + FGGGPVG+ T++  + E R+ +E++ EP++
Sbjct: 252 IAGSALAVYDVDGRGLDRLDRAVLSALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPFL 311

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           +++G + RTPRGR+  P AW+HLG+  P R
Sbjct: 312 VREGLLARTPRGRIGTPAAWEHLGLTPPQR 341


>gi|333028332|ref|ZP_08456396.1| putative holliday junction DNA helicase RuvB [Streptomyces sp.
           Tu6071]
 gi|332748184|gb|EGJ78625.1| putative holliday junction DNA helicase RuvB [Streptomyces sp.
           Tu6071]
          Length = 356

 Score =  340 bits (872), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 158/329 (48%), Positives = 220/329 (66%), Gaps = 1/329 (0%)

Query: 6   GLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
            L+      ED A  + LRP+ L+EF GQ +    L + ++AA+AR    DHVL  G PG
Sbjct: 17  RLVDAGADTEDTAVEAALRPKDLDEFIGQEKVREQLDLVLKAARARGATADHVLLSGAPG 76

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTL+ ++A E+    R TSGP I  AGDLAA+L++L++ +VLF+DEIHR+S   EE+
Sbjct: 77  LGKTTLSMIIAAEMAAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEM 136

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LY AMEDF++D++VG+GP A ++ ++L  FTL+ ATTR GLL  PL+DRFG    + FY 
Sbjct: 137 LYMAMEDFRVDVIVGKGPGATAIPLDLPPFTLVGATTRAGLLPPPLRDRFGFTAHMEFYA 196

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
             +L+ ++ R A+L  +A+    A EIA RSRGTPRIA RLLRRVRD+A+V     IT E
Sbjct: 197 PAELERVIHRSARLLDVAIDAAGAAEIAGRSRGTPRIANRLLRRVRDYAQVKADGHITVE 256

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           IA AAL    +D  G D+LD   L  + + F GGPVG+ T+S  + E R+ +E++ EP++
Sbjct: 257 IASAALGVYEVDARGLDRLDRAVLEALLKLFSGGPVGLSTLSVAVGEERETVEEVAEPFL 316

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +++G + RTPRGR+  P AW HLG+  P 
Sbjct: 317 VREGLLARTPRGRVATPAAWAHLGLAPPQ 345


>gi|302517990|ref|ZP_07270332.1| Holliday junction DNA helicase RuvB [Streptomyces sp. SPB78]
 gi|302426885|gb|EFK98700.1| Holliday junction DNA helicase RuvB [Streptomyces sp. SPB78]
          Length = 356

 Score =  340 bits (872), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 158/329 (48%), Positives = 220/329 (66%), Gaps = 1/329 (0%)

Query: 6   GLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
            L+      ED A  + LRP+ L+EF GQ +    L + ++AA+AR    DHVL  G PG
Sbjct: 17  RLVDAGADTEDTAVEAALRPKDLDEFIGQEKVREQLDLVLKAARARGATADHVLLSGAPG 76

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTL+ ++A E+    R TSGP I  AGDLAA+L++L++ +VLF+DEIHR+S   EE+
Sbjct: 77  LGKTTLSMIIAAEMAAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEM 136

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LY AMEDF++D++VG+GP A ++ ++L  FTL+ ATTR GLL  PL+DRFG    + FY 
Sbjct: 137 LYMAMEDFRVDVIVGKGPGATAIPLDLPPFTLVGATTRAGLLPPPLRDRFGFTAHMEFYA 196

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
             +L+ ++ R A+L  +A+    A EIA RSRGTPRIA RLLRRVRD+A+V     IT E
Sbjct: 197 PAELERVIHRSARLLDVAIDAAGAAEIAGRSRGTPRIANRLLRRVRDYAQVKADGHITVE 256

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           IA AAL    +D  G D+LD   L  + + F GGPVG+ T+S  + E R+ +E++ EP++
Sbjct: 257 IASAALGVYEVDARGLDRLDRAVLEALLKLFSGGPVGLSTLSVAVGEERETVEEVAEPFL 316

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +++G + RTPRGR+  P AW HLG+  P 
Sbjct: 317 VREGLLARTPRGRVATPAAWAHLGLAPPQ 345


>gi|257467707|ref|ZP_05631803.1| Holliday junction DNA helicase RuvB [Fusobacterium ulcerans ATCC
           49185]
 gi|317062000|ref|ZP_07926485.1| holliday junction DNA helicase B [Fusobacterium ulcerans ATCC
           49185]
 gi|313687676|gb|EFS24511.1| holliday junction DNA helicase B [Fusobacterium ulcerans ATCC
           49185]
          Length = 340

 Score =  340 bits (872), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 164/324 (50%), Positives = 231/324 (71%), Gaps = 1/324 (0%)

Query: 5   EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           + +++ +  + D +I   LRPR  +E+ GQV     + + IEAAK R  ++DH+L  GPP
Sbjct: 2   DRVITTSEMENDIEIQRTLRPRCFKEYIGQVSLKEKMSISIEAAKKRGGSIDHILLYGPP 61

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA V+A E+G N + TSGPV+ +AGDLAA+LT+LE+ D+LFIDEIHRL+  VEE
Sbjct: 62  GLGKTTLAGVIATEMGANLKITSGPVLERAGDLAAILTSLEENDILFIDEIHRLNNTVEE 121

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILYPAMED +LD+++G+GPSARS++I L  FTLI ATTR GLL++PL+DRFG+  R+ +Y
Sbjct: 122 ILYPAMEDKELDIIIGKGPSARSIRIELPSFTLIGATTRAGLLSSPLRDRFGVTHRMEYY 181

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
             E++  I+ RG  + G+ +  + A E+A RSRGTPRIA RLL+RVRDF E+     I R
Sbjct: 182 SEEEITDIILRGGNILGVKIELDGAKELASRSRGTPRIANRLLKRVRDFCEIRGNGIIDR 241

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           +I+  AL  L ID  G D LD   +  I  N+GGGPVGI+T+S  L E +  +E++ EPY
Sbjct: 242 DISLKALDILGIDSAGLDDLDRDIVNAIIDNYGGGPVGIDTLSLMLGEDKRTLEEVYEPY 301

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHL 327
           +++ G+++RT RGR++   A++H 
Sbjct: 302 LVKIGYLKRTNRGRMVTEKAYEHF 325


>gi|312139495|ref|YP_004006831.1| holliday junction DNA helicase ruvb [Rhodococcus equi 103S]
 gi|311888834|emb|CBH48146.1| Holliday junction DNA helicase RuvB [Rhodococcus equi 103S]
          Length = 371

 Score =  340 bits (872), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 161/329 (48%), Positives = 222/329 (67%), Gaps = 1/329 (0%)

Query: 5   EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E  ++ N    D ++   LRP+ L +F GQ      L++ +  AK R    DHVL  GPP
Sbjct: 13  ESAVTANFVSSDGEVEASLRPKNLSDFIGQPRVREQLQLVLTGAKLRGGTPDHVLLSGPP 72

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKT++A ++A ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++   EE
Sbjct: 73  GLGKTSMAMIIATELGTSLRLTSGPALERAGDLAAMLSNLVEGDVLFIDEIHRMARPAEE 132

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LY AMEDF++D++VG+GP A S+ + ++ FTL+ ATTR G LT PL+DRFG    ++FY
Sbjct: 133 MLYLAMEDFRVDVVVGKGPGATSIPLEVAPFTLVGATTRSGALTGPLRDRFGFTAHMDFY 192

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           E  +L+ I+ R A + G+ + +EA  EIA RSRGTPRIA RLLRRVRD+AEV     ITR
Sbjct: 193 EPHELQLILLRSAGILGIELGEEAGAEIAGRSRGTPRIANRLLRRVRDYAEVRADGIITR 252

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           EIA AAL    +D +G D+LD   L  + R+FGGGPVG+ T++  + E    +E++ EP+
Sbjct: 253 EIAQAALAVYDVDPLGLDRLDRAVLGALVRSFGGGPVGVSTLAVAVGEEPSTVEEVCEPF 312

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           +++ G I RTPRGR+    AW  LG+  P
Sbjct: 313 LVRAGMIARTPRGRVATAAAWAQLGLTPP 341


>gi|331697369|ref|YP_004333608.1| Holliday junction ATP-dependent DNA helicase ruvB [Pseudonocardia
           dioxanivorans CB1190]
 gi|326952058|gb|AEA25755.1| Holliday junction ATP-dependent DNA helicase ruvB [Pseudonocardia
           dioxanivorans CB1190]
          Length = 346

 Score =  340 bits (872), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 160/334 (47%), Positives = 224/334 (67%), Gaps = 3/334 (0%)

Query: 2   MDREGL--LSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M  E L  +   V +ED D+   LRPR L EF GQ      L++ +E A+ R    DH+L
Sbjct: 1   MSEENLRDVGGEVLEEDLDVEGTLRPRRLSEFIGQPRVREQLELVLEGARRRGTPPDHIL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKT+L+ +VA ELG   R TSGP + +AGDLAA+L+NL   DVLFIDEIHR++
Sbjct: 61  LSGPPGLGKTSLSMIVAAELGAAIRLTSGPALERAGDLAAMLSNLMPGDVLFIDEIHRIA 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
              EE+LY AMEDF++D++VG+GP A S+ ++++ FTL+ ATTR G LT PL+DRFG   
Sbjct: 121 RPAEEMLYLAMEDFRVDVVVGKGPGATSIPLDIAPFTLVGATTRAGALTGPLRDRFGFTG 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
            + FYE  +L+ +++R A +  + +  + A EIA RSRGTPRIA RLLRRVRDFAEV   
Sbjct: 181 HMEFYEPAELELVLRRAAAILEVDLRPDGAAEIARRSRGTPRIANRLLRRVRDFAEVRAD 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             +T ++A  AL    +D++G D+LD   L+ + ++FGGGPVG+ T++  + E    +E+
Sbjct: 241 GAVTLDVAREALAVYDVDELGLDRLDRAVLSALVKSFGGGPVGVSTLAVAVGEEPGTVEE 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           + EPY+++ G + RTPRGR+    AW HLG+  P
Sbjct: 301 VCEPYLVRAGMLARTPRGRVATAAAWGHLGVTPP 334


>gi|238063871|ref|ZP_04608580.1| Holliday junction DNA helicase subunit ruvB [Micromonospora sp.
           ATCC 39149]
 gi|237885682|gb|EEP74510.1| Holliday junction DNA helicase subunit ruvB [Micromonospora sp.
           ATCC 39149]
          Length = 356

 Score =  340 bits (872), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 160/329 (48%), Positives = 223/329 (67%), Gaps = 1/329 (0%)

Query: 6   GLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
            L+S  V+  + D    +RP+ LEEF  Q      L + + +A  R    DH+L  GPPG
Sbjct: 7   NLVSAYVNDAERDAEASVRPKRLEEFIAQHRVREQLDLLLRSAMRRGSPPDHILLSGPPG 66

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLA +VA ELG   R TSGP I ++GDLAA+LT+L + DVLFIDEIHR++   EE+
Sbjct: 67  LGKTTLANIVAAELGAGIRVTSGPAIERSGDLAAILTSLGEGDVLFIDEIHRIAKPAEEL 126

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LY AMEDF++D++VG+GP A ++ +++  FTL+ ATTR GLLT P++DRFG    L+FY 
Sbjct: 127 LYSAMEDFRVDVVVGKGPGATAIPLDVEPFTLVGATTRSGLLTGPMRDRFGFVAHLDFYS 186

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
             DL+ +++R A++ G+ +TD+ A EI+ RSRGTPRIA RLLRRVRDFAEV     +T E
Sbjct: 187 PADLEVLLRRSARILGVPITDDGAVEISGRSRGTPRIANRLLRRVRDFAEVRADGVVTVE 246

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
            A AAL    +D +G D+LD   LT +  +F GGPVG+ T++  + E  D +E++ EP++
Sbjct: 247 TARAALTVYDVDALGLDRLDRAVLTALVDSFRGGPVGLSTLAVAVGEQPDTVEEVCEPFL 306

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           ++ G + RTPRGR+    AW+HLG   P+
Sbjct: 307 VRAGLLARTPRGRVATEAAWRHLGRTPPN 335


>gi|291301297|ref|YP_003512575.1| Holliday junction DNA helicase RuvB [Stackebrandtia nassauensis DSM
           44728]
 gi|290570517|gb|ADD43482.1| Holliday junction DNA helicase RuvB [Stackebrandtia nassauensis DSM
           44728]
          Length = 359

 Score =  340 bits (872), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 163/331 (49%), Positives = 228/331 (68%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           + + + ++ +  E    + +RP  LEE  GQ      L++ +  A+ R+ A DH+L  GP
Sbjct: 11  EPDIVSAQAMPAEARAEAGVRPAKLEELIGQARVREQLELLLSGAQQRSAAPDHILLSGP 70

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA +VA ELGV+ R TSGP I ++GDLAA+LT+L   DVLFIDEIHR++   E
Sbjct: 71  PGLGKTTLAMIVAAELGVSLRQTSGPAIERSGDLAAVLTSLGPGDVLFIDEIHRIARPAE 130

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LY AMEDF++D+MVG+GP A ++ ++L  FTL+ ATTR GLLT PL+DRFG   +L+F
Sbjct: 131 ELLYTAMEDFRVDVMVGKGPGATAIPLDLEPFTLVGATTRSGLLTGPLRDRFGFVGQLDF 190

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y+  +L++IV R A++  + +TD  A EIA RSRGTPRIA RLLRRVRDFA+V     +T
Sbjct: 191 YDPPELESIVHRTARILSVDITDSGAREIAGRSRGTPRIANRLLRRVRDFAQVRADGHVT 250

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           +E+A AAL    +D +G D+LD   LT +  +FGGGPVG+ T++  + E  D +E++ EP
Sbjct: 251 QEVASAALALYDVDDIGLDRLDRAVLTALIESFGGGPVGLTTLAVAVGEEPDTVEEVCEP 310

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           Y+++ G + RTPRGR+     W+HLG   P 
Sbjct: 311 YLVRSGLLARTPRGRVATVHGWRHLGRTPPR 341


>gi|157738008|ref|YP_001490692.1| Holliday junction DNA helicase RuvB [Arcobacter butzleri RM4018]
 gi|167012666|sp|A8EVP9|RUVB_ARCB4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|157699862|gb|ABV68022.1| holliday junction DNA helicase RuvB [Arcobacter butzleri RM4018]
          Length = 345

 Score =  340 bits (872), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 165/331 (49%), Positives = 234/331 (70%), Gaps = 1/331 (0%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M R   +     +ED +   LRP   +++ GQ +   NL+VFI+A+K R EALDH+LF G
Sbjct: 1   MQRLVEVESVSFEEDNNEISLRPSNWDDYIGQEKIKKNLRVFIDASKKRKEALDHILFYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTL+ +++ E+  N + T+GP+I K+GDLAA+LTNLE+ D+LFIDEIHRLS  V
Sbjct: 61  PPGLGKTTLSYLISNEMNTNIKVTAGPMIEKSGDLAAILTNLEEGDILFIDEIHRLSPAV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILYPAMED++LD+++G GP+A++VKI+L RFTLI ATTR G+L+NPL++RFG+  R+ 
Sbjct: 121 EEILYPAMEDYRLDIIIGSGPAAQTVKIDLPRFTLIGATTRAGMLSNPLRERFGMHFRMQ 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY   +L  I+Q+ +   G    D+A+ EI+ RSRGTPR+A RLLRRVRDF+EV + K+I
Sbjct: 181 FYTEIELAKIIQKASLKLGKNCEDDASLEISKRSRGTPRVALRLLRRVRDFSEVENEKSI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
             +    AL  L +++ GFD++D+  L ++  N  G P+G+ TI+A LSE    IED IE
Sbjct: 241 HLQRCKYALDELGVNESGFDEMDINLLELLISN-RGKPMGLSTIAAALSEDEGTIEDAIE 299

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           PY++  G+I+RT RGR+     ++   +  P
Sbjct: 300 PYLLANGYIERTARGRVASVKTYEMFRLSYP 330


>gi|46198346|ref|YP_004013.1| Holliday junction DNA helicase B [Thermus thermophilus HB27]
 gi|47606090|sp|P61537|RUVB_THET2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|46195968|gb|AAS80386.1| holliday junction DNA helicase ruvB [Thermus thermophilus HB27]
          Length = 336

 Score =  340 bits (872), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 175/317 (55%), Positives = 228/317 (71%), Gaps = 1/317 (0%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
            D   LRP+TL+E+ GQ      L+V++EAAKAR E L+H+L  GPPGLGKTTLA V+A 
Sbjct: 13  VDDLALRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAH 72

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTN-LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           ELGVN R TSGP I K GDLAA+L N LE+ D+LFIDEIHRLS   EE LYPAMEDF +D
Sbjct: 73  ELGVNLRVTSGPAIEKPGDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMD 132

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           +++G+GP+AR++++ L RFTLI ATTR GL+T PL  RFGI   L +Y  E+L   V R 
Sbjct: 133 IVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRD 192

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255
           A+L G+ +T+EAA EI  RSRGT R+A RL RRVRDFA+VA  + ITRE A  AL  L +
Sbjct: 193 ARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAALGL 252

Query: 256 DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR 315
           D++G ++ D   L ++   FGGGPVG+ T++  LSE    +E++ EPY+I+QG ++RTPR
Sbjct: 253 DELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRTPR 312

Query: 316 GRLLMPIAWQHLGIDIP 332
           GR+   +A++HLG   P
Sbjct: 313 GRVATELAYRHLGYPPP 329


>gi|120403561|ref|YP_953390.1| Holliday junction DNA helicase RuvB [Mycobacterium vanbaalenii
           PYR-1]
 gi|171769147|sp|A1T884|RUVB_MYCVP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|119956379|gb|ABM13384.1| Holliday junction DNA helicase subunit RuvB [Mycobacterium
           vanbaalenii PYR-1]
          Length = 355

 Score =  340 bits (871), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 161/330 (48%), Positives = 223/330 (67%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           D   + +     E    + LRPR+L EF GQ      L++ +E AK R    DH+L  GP
Sbjct: 13  DEREMSAALTVGEGDIDASLRPRSLGEFIGQPRVREQLQLVLEGAKNRGGTPDHILLSGP 72

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKT+LA ++A ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++   E
Sbjct: 73  PGLGKTSLAMIIAAELGSSLRVTSGPALERAGDLAAMLSNLVEHDVLFIDEIHRIARPAE 132

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LY AMEDF++D++VG+GP A S+ + ++ FTL+ ATTR G LT PL+DRFG    ++F
Sbjct: 133 EMLYLAMEDFRVDVVVGKGPGATSIPLEVAPFTLVGATTRSGALTGPLRDRFGFTAHMDF 192

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           YE  +L+ ++ R A + G+ +  EA  EIA RSRGTPRIA RLLRRVRD+AEV     IT
Sbjct: 193 YEPSELERVLARSAGILGIELGAEAGAEIARRSRGTPRIANRLLRRVRDYAEVRADGVIT 252

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           R+IA  AL    +D++G D+LD   L+ + R+FGGGPVG+ T++  + E    +E++ EP
Sbjct: 253 RDIAKYALEVYDVDELGLDRLDRAVLSALTRSFGGGPVGVSTLAVAVGEEATTVEEVCEP 312

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++++ G I RTPRGR+    AW HLG+  P
Sbjct: 313 FLVRAGMIARTPRGRVATAQAWTHLGMKPP 342


>gi|116513151|ref|YP_812058.1| Holliday junction DNA helicase B [Lactococcus lactis subsp.
           cremoris SK11]
 gi|123025084|sp|Q02VS7|RUVB_LACLS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|116108805|gb|ABJ73945.1| Holliday junction DNA helicase subunit RuvB [Lactococcus lactis
           subsp. cremoris SK11]
          Length = 333

 Score =  340 bits (871), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 163/326 (50%), Positives = 224/326 (68%), Gaps = 1/326 (0%)

Query: 5   EGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
             +L++   +ED  I   LRP+   ++ GQ +    L++FI+AAK R E LDHVL  GPP
Sbjct: 2   NDILNKEPMEEDYGIEKSLRPQFFNQYIGQDKVKEQLEIFIKAAKMREEVLDHVLLFGPP 61

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTT+A V+A ELGVN + T+GP I K GDL A+L  LE  DVLFIDEIHR+ + VEE
Sbjct: 62  GLGKTTMAFVIANELGVNIKQTAGPAIEKPGDLVAILNELEPGDVLFIDEIHRMPMQVEE 121

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LY AMEDF +D+M+G G  +RSV ++L  FTL+ ATTR G+L+NPL+ RFGI   + +Y
Sbjct: 122 VLYSAMEDFYIDIMLGSGDGSRSVHLDLPPFTLVGATTRAGMLSNPLRARFGISSHMEYY 181

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           +  DL+ IV+R A +  + V D AA EIA+RSRGTPRIA RLL+RVRDFA++     + +
Sbjct: 182 QERDLEEIVKRTADIFEVEVIDNAAIEIALRSRGTPRIANRLLKRVRDFAQIMGDGRVDK 241

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
            I D AL  L +D  G D +D + L  +   + GGPVGI T++  ++E R+ +ED+ EPY
Sbjct: 242 AITDKALTILDVDAAGLDYIDQKILRTMIEMYHGGPVGIGTLAVNIAEDRETVEDMYEPY 301

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGI 329
           +IQ+GF+ RT +GR +   A++HLG 
Sbjct: 302 LIQKGFLMRTKQGRKVTQRAYEHLGY 327


>gi|125625243|ref|YP_001033726.1| Holliday junction DNA helicase B [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|166231499|sp|A2RP06|RUVB_LACLM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|124494051|emb|CAL99051.1| holliday junction DNA helicase ruvB [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|300072053|gb|ADJ61453.1| Holliday junction DNA helicase RuvB [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 333

 Score =  340 bits (871), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 163/326 (50%), Positives = 224/326 (68%), Gaps = 1/326 (0%)

Query: 5   EGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
             +L++   +ED  I   LRP+   ++ GQ +    L++FI+AAK R E LDHVL  GPP
Sbjct: 2   NDILNKEPMEEDYGIEKSLRPQFFNQYIGQDKVKEQLEIFIKAAKMREEVLDHVLLFGPP 61

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTT+A V+A ELGVN + T+GP I K GDL A+L  LE  DVLFIDEIHR+ + VEE
Sbjct: 62  GLGKTTMAFVIANELGVNIKQTAGPAIEKPGDLVAILNELEPGDVLFIDEIHRMPMQVEE 121

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LY AMEDF +D+M+G G  +RSV ++L  FTL+ ATTR G+L+NPL+ RFGI   + +Y
Sbjct: 122 VLYSAMEDFYIDIMLGSGDGSRSVHLDLPPFTLVGATTRAGMLSNPLRARFGISSHMEYY 181

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           +  DL+ IV+R A +  + V D AA EIA+RSRGTPRIA RLL+RVRDFA++     + +
Sbjct: 182 QERDLEEIVKRTADIFEVEVIDNAAMEIALRSRGTPRIANRLLKRVRDFAQIMGDGRVDK 241

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
            I D AL  L +D  G D +D + L  +   + GGPVGI T++  ++E R+ +ED+ EPY
Sbjct: 242 AITDKALTILDVDAAGLDYIDQKILRTMIEIYHGGPVGIGTLAVNIAEDRETVEDMYEPY 301

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGI 329
           +IQ+GF+ RT +GR +   A++HLG 
Sbjct: 302 LIQKGFLMRTKQGRKVTQRAYEHLGY 327


>gi|261417027|ref|YP_003250710.1| Holliday junction DNA helicase RuvB [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261373483|gb|ACX76228.1| Holliday junction DNA helicase RuvB [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302325461|gb|ADL24662.1| Holliday junction DNA helicase RuvB [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 345

 Score =  340 bits (871), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 167/334 (50%), Positives = 223/334 (66%), Gaps = 2/334 (0%)

Query: 2   MDREGLLSRN--VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M+ + ++S       E      LRP +L EFTGQ +   +L + IEAAK R +ALDH LF
Sbjct: 1   MEDQRIISPQKCSFDEGDTDRNLRPPSLSEFTGQDDIKESLSIAIEAAKQRGDALDHCLF 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTL+ ++A+E+GVN   TSGPV+ KA DLA LLT+L++ D+LFIDEIHRL+ 
Sbjct: 61  AGPPGLGKTTLSSIIAKEMGVNIHITSGPVLEKASDLAGLLTSLQENDILFIDEIHRLNR 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE LYPAMEDF+LD+M+  GP+ARSV + L  FTL+ ATTR GLLT PL+DRFG+  R
Sbjct: 121 VVEEYLYPAMEDFRLDIMLDSGPAARSVNLPLKHFTLVGATTRSGLLTGPLRDRFGLQYR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L  Y  +D+  I+ R A++ G+ +++EAA  +  R RGTPR+A R+LRR RD A+V    
Sbjct: 181 LELYNEKDIVKILMRSARILGVELSEEAAKILGGRCRGTPRVANRVLRRCRDVAQVRGTG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I    A   L  L ID  G D  D + L M+   F GGPVG+ TISA + E  D +E++
Sbjct: 241 VIDERAALKTLEMLGIDSEGLDPTDRKILAMMIDKFNGGPVGLGTISAAMGEEPDTLEEV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            EPY++Q+G I RTPRGR+    A++ L   +P 
Sbjct: 301 YEPYLLQKGLISRTPRGRIATLNAYRMLHKPLPK 334


>gi|291295268|ref|YP_003506666.1| Holliday junction DNA helicase RuvB [Meiothermus ruber DSM 1279]
 gi|290470227|gb|ADD27646.1| Holliday junction DNA helicase RuvB [Meiothermus ruber DSM 1279]
          Length = 329

 Score =  340 bits (871), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 172/314 (54%), Positives = 223/314 (71%), Gaps = 1/314 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP+ L+++ GQ +    L+V++EAAK R EALDH+L  GPPGLGKTTLA VVA ELGVN
Sbjct: 11  LRPKRLDDYVGQAKLKKKLRVYLEAAKNRGEALDHLLLFGPPGLGKTTLAHVVAYELGVN 70

Query: 82  FRSTSGPVIAKAGDLAALLTN-LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
            R TSGP I K GDLAA+LTN LE+ D+LFIDEIHRLS   EE LYPA+EDF++D+++G 
Sbjct: 71  IRVTSGPAIEKPGDLAAILTNSLEEGDILFIDEIHRLSKAAEEHLYPALEDFKIDIVIGA 130

Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
           GP+AR+++++L RFTLI ATTR GL++ PL+ RFGI   L FY   +L   V R A+L G
Sbjct: 131 GPAARTLRLDLPRFTLIGATTRPGLISGPLRSRFGIIEHLEFYTETELAQGVTRDAQLMG 190

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGF 260
           LA+  EAA EI  RSRGT RIA RL RRVRDFAEVA  + +  E A  AL  L +D +G 
Sbjct: 191 LAIEPEAALEIGRRSRGTMRIAKRLFRRVRDFAEVAGEQVVGLERARQALDALGLDALGL 250

Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320
           D  D + +  +   F GGPVG+ET++  LSE  + +E++ EP++IQ G ++RTPRGR   
Sbjct: 251 DARDRQIIQTVIERFAGGPVGLETLATALSEDPETLEEVHEPFLIQLGLLKRTPRGRQAT 310

Query: 321 PIAWQHLGIDIPHR 334
             A+ HLG  +P +
Sbjct: 311 ERAYAHLGYPLPEQ 324


>gi|300866394|ref|ZP_07111092.1| Holliday junction ATP-dependent DNA helicase ruvB [Oscillatoria sp.
           PCC 6506]
 gi|300335604|emb|CBN56252.1| Holliday junction ATP-dependent DNA helicase ruvB [Oscillatoria sp.
           PCC 6506]
          Length = 367

 Score =  339 bits (870), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 157/331 (47%), Positives = 219/331 (66%), Gaps = 4/331 (1%)

Query: 3   DREGLLSRNVSQEDA----DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           + E L+      ++         +RP  L ++ GQ +    L + ++AAK+R E LDH+L
Sbjct: 32  EPESLVEPEAFADEESTNKQEEKIRPHRLADYIGQKDLKEFLAIALQAAKSRNEPLDHLL 91

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTT++ ++A E+GVN + T+ P + K  D+  LL +L+  DVLF+DEIHRLS
Sbjct: 92  LYGPPGLGKTTMSLIIAEEMGVNCKITTAPALEKPRDIVGLLVSLKAGDVLFLDEIHRLS 151

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            + EEILYPAMED +LD+ +G+G +A++  I L  FTL+ ATT+VG LT PL+DRFG   
Sbjct: 152 KVAEEILYPAMEDCRLDITIGQGKTAKTRSIPLKPFTLVGATTKVGSLTAPLRDRFGFIQ 211

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           RL FYEI++L +IV R A++    +T E A EIA R+RGTPRIA RLLRRVRD++EV + 
Sbjct: 212 RLRFYEIDELTSIVLRSAQVLDTPITTEGAQEIARRARGTPRIANRLLRRVRDYSEVKNL 271

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             I  E+A  +L    +D +G D  D   L+ +  +F GGPVG+ETI+A   E    IE+
Sbjct: 272 TPIDAEVASISLELFNVDPLGLDWTDRLILSRMIESFNGGPVGLETIAAATGEDSQTIEE 331

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           + EPY++Q GF+QRT RGR+  P AW+HLG 
Sbjct: 332 VCEPYLMQIGFMQRTNRGRIATPAAWKHLGY 362


>gi|218438533|ref|YP_002376862.1| Holliday junction DNA helicase RuvB [Cyanothece sp. PCC 7424]
 gi|226725455|sp|B7K9M6|RUVB_CYAP7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|218171261|gb|ACK69994.1| Holliday junction DNA helicase RuvB [Cyanothece sp. PCC 7424]
          Length = 366

 Score =  339 bits (870), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 162/329 (49%), Positives = 220/329 (66%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           D   L +  + + +A    +RPR L ++ GQ E    LK+ I AAK R EALDH+L  GP
Sbjct: 31  DHRLLETGRLEETEAAEDSIRPRNLNDYIGQKELKEVLKIAIGAAKVRKEALDHLLLYGP 90

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTT+A ++A E+GVN + T+ P + +  D+  LL NL+  D+LFIDEIHRL+ + E
Sbjct: 91  PGLGKTTMALILAAEMGVNCKITAAPALERPRDITGLLINLKPGDILFIDEIHRLNRMSE 150

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMED +LD+  G+G SA+   I LS FTLI ATT++G LT+PL+DRFG+  RL F
Sbjct: 151 ELLYPAMEDQRLDITTGKGKSAKIRSIPLSPFTLIGATTKIGALTSPLRDRFGLIQRLRF 210

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           YE+++L  +V R AK+    + +E A EIA RSRGTPRIA RLL+RVRD+A V   ++IT
Sbjct: 211 YEVDELCLVVLRTAKILNAKIKEEGALEIARRSRGTPRIANRLLKRVRDYALVKKIESIT 270

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             +A  AL +L +D  G D  D   L  I + F GGPVG+ET++A   E    IE++ EP
Sbjct: 271 EALAAEALDKLNVDSRGLDWTDRLVLDTIIQQFRGGPVGLETVAAATGEDAKTIEEVYEP 330

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           Y++Q G++ RT RGR+    A+QHLG D 
Sbjct: 331 YLLQIGYLNRTSRGRIATEAAYQHLGYDY 359


>gi|239932398|ref|ZP_04689351.1| Holliday junction DNA helicase RuvB [Streptomyces ghanaensis ATCC
           14672]
 gi|291440765|ref|ZP_06580155.1| holliday junction DNA helicase B [Streptomyces ghanaensis ATCC
           14672]
 gi|291343660|gb|EFE70616.1| holliday junction DNA helicase B [Streptomyces ghanaensis ATCC
           14672]
          Length = 356

 Score =  339 bits (870), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 162/330 (49%), Positives = 224/330 (67%), Gaps = 1/330 (0%)

Query: 5   EGLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E L+  +   ED A  + LRP+ L+EF GQ +    L + + AA+AR    DHVL  G P
Sbjct: 13  ERLVGASADGEDQAVEAALRPKDLDEFIGQEKVREQLDLVLRAARARGATADHVLLSGAP 72

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTL+ ++A E+G   R TSGP I  AGDLAA+L++L++ +VLF+DEIHR+S   EE
Sbjct: 73  GLGKTTLSMIIAAEMGAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEE 132

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LY AMEDF++D++VG+GP A ++ + L  FTL+ ATTR GLL  PL+DRFG    + FY
Sbjct: 133 MLYMAMEDFRVDVIVGKGPGATAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTAHMEFY 192

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           E  +L+ +V R A L  + +  E A EIA RSRGTPRIA RLLRRVRD+A+V     IT+
Sbjct: 193 EPAELERVVHRSASLLDVEIDTEGAAEIAGRSRGTPRIANRLLRRVRDYAQVKADGLITK 252

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           EIA AAL    +D  G D+LD   L  + + FGGGPVG+ T++  + E R+ +E++ EP+
Sbjct: 253 EIAAAALAVYEVDARGLDRLDRAVLQALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPF 312

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           ++++G + RTPRGR+  P AW+HLG+  P 
Sbjct: 313 LVREGLLARTPRGRVATPAAWEHLGLTPPR 342


>gi|239978431|ref|ZP_04700955.1| Holliday junction DNA helicase RuvB [Streptomyces albus J1074]
 gi|291450327|ref|ZP_06589717.1| holliday junction DNA helicase B [Streptomyces albus J1074]
 gi|291353276|gb|EFE80178.1| holliday junction DNA helicase B [Streptomyces albus J1074]
          Length = 361

 Score =  339 bits (870), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 160/333 (48%), Positives = 222/333 (66%), Gaps = 1/333 (0%)

Query: 3   DREGLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           D   L+      ED A  + LRP+ L EF GQ +  + L + ++AA+AR    DHVL  G
Sbjct: 16  DGHRLVGSVADGEDTAVEAALRPKELGEFIGQEKVRAQLDLVLKAARARGATADHVLLSG 75

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
            PGLGKTTL+ ++A E+    R TSGP I  AGDLAA+L++L++ +VLF+DEIHR+S   
Sbjct: 76  APGLGKTTLSMIIAAEMEAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPA 135

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMEDF++D++VG+GP A ++ + L  FTL+ ATTR GLL  PL+DRFG    + 
Sbjct: 136 EEMLYMAMEDFRVDVIVGKGPGATAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTGHME 195

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY   +L+ +V R A+L  + +  E A EIA RSRGTPRIA RLLRRVRD+A+V     +
Sbjct: 196 FYGPAELERVVHRSARLLDVEIDTEGAAEIAGRSRGTPRIANRLLRRVRDYAQVKADGAV 255

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
            REIA AAL    +D  G D+LD   L  + + FGGGPVG+ T+S  + E R+ +E++ E
Sbjct: 256 DREIASAALAVYEVDARGLDRLDRSVLEALLKLFGGGPVGLSTLSVAVGEERETVEEVAE 315

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           P+++++G + RTPRGR+  P AW HLG+  P +
Sbjct: 316 PFLVREGLLARTPRGRVATPAAWAHLGLTPPRQ 348


>gi|224372722|ref|YP_002607094.1| Holliday junction DNA helicase RuvB [Nautilia profundicola AmH]
 gi|223589928|gb|ACM93664.1| holliday junction DNA helicase RuvB [Nautilia profundicola AmH]
          Length = 330

 Score =  339 bits (869), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 168/321 (52%), Positives = 235/321 (73%), Gaps = 2/321 (0%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
             VS ++     LRP+ L+E+ GQ +   NLKVFIEAAK R E+LDH+LF GPPGLGKTT
Sbjct: 7   EKVSFDEVYEKSLRPQNLDEYIGQEQIKKNLKVFIEAAKKRGESLDHILFFGPPGLGKTT 66

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           LA ++A E+G N ++ S P++ K+GDLAA+LTNLED D+LFIDEIHRL   +EE+LY AM
Sbjct: 67  LANIIASEMGSNLKTISAPMLEKSGDLAAILTNLEDGDILFIDEIHRLKASIEEVLYSAM 126

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           EDF+LD+++G GP+A+++K++++RFTLI ATTR G+L+NPL+DRFG+  RLNFY  E+L 
Sbjct: 127 EDFRLDIVIGSGPAAQTIKLDVARFTLIGATTRAGMLSNPLRDRFGMSFRLNFYNHEELS 186

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            I++  A+     +   AA EIA RSRGTPRIA RLL+RVRDFAE+    TIT +    A
Sbjct: 187 EIIRLAAQKLSKEIESNAAVEIAKRSRGTPRIALRLLKRVRDFAEIKDENTITHKTTKYA 246

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           L  L I++ GFD+LD+++LT++A      P+G+ TI+A LSE    IE++IEP+++  GF
Sbjct: 247 LDELGINEHGFDELDIKFLTLLAD--AKKPIGLSTIAAALSEDEGTIEEVIEPFLLANGF 304

Query: 310 IQRTPRGRLLMPIAWQHLGID 330
           +++TP+GR+    A++ L   
Sbjct: 305 VEKTPKGRIATRKAYEILRFP 325


>gi|217077920|ref|YP_002335638.1| Holliday junction DNA helicase RuvB [Thermosipho africanus TCF52B]
 gi|217037775|gb|ACJ76297.1| holliday junction DNA helicase RuvB [Thermosipho africanus TCF52B]
          Length = 336

 Score =  339 bits (869), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 159/329 (48%), Positives = 229/329 (69%), Gaps = 2/329 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M+  E +        D     +RP+ LEE+ GQ      LK+ I A+K R EALDHVL V
Sbjct: 1   MIISERIFDPEKLPNDVL--TIRPQKLEEYIGQENIKKRLKLAINASKIRKEALDHVLLV 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA +++ E+G N   TSGP++ K GD+AA+L+NLE  D+LFIDEIHR++  
Sbjct: 59  GPPGLGKTTLAHIISNEMGTNIHITSGPILEKQGDVAAILSNLEYGDILFIDEIHRMNKS 118

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILY AMEDFQ+D+++G+GPSARS++I+L  FTL+ ATTR GLL++PL++RFG+ + L
Sbjct: 119 VEEILYTAMEDFQIDILIGKGPSARSIRIDLQPFTLVGATTRSGLLSSPLRNRFGLIMEL 178

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           +FY +E+L  I++R + +  + + ++AA  +A RSRGTPRIA RLLRRVRD + V   K 
Sbjct: 179 DFYTVEELSLIIKRASTVLNVEIDEDAAQLLAKRSRGTPRIALRLLRRVRDMSTVTEKKK 238

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I   + +  +  L ID  G D++D + LT I   + GGPVG+++++A +    D+I ++ 
Sbjct: 239 IDVMMVEEIMELLGIDNEGLDEVDRKILTTIIEVYQGGPVGLKSLAASVGLSEDSISEVY 298

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           EPY++Q GF+ RT RGR++   A++HLG 
Sbjct: 299 EPYLLQSGFLARTHRGRVVTSKAYKHLGY 327


>gi|330466912|ref|YP_004404655.1| Holliday junction DNA helicase RuvB [Verrucosispora maris
           AB-18-032]
 gi|328809883|gb|AEB44055.1| Holliday junction DNA helicase RuvB [Verrucosispora maris
           AB-18-032]
          Length = 356

 Score =  339 bits (869), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 159/330 (48%), Positives = 224/330 (67%), Gaps = 1/330 (0%)

Query: 5   EGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
            GL+S  V+  + D    +RP+ L+EF  Q      L + ++ A  R    DH+L  GPP
Sbjct: 6   NGLVSAYVNDAERDAEVSVRPKRLDEFIAQHRVRDQLDLLLQGAMRRGSPPDHILLSGPP 65

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA +VA ELG   R TSGP I ++GDLAA+LT+L + DVLFIDEIHR++   EE
Sbjct: 66  GLGKTTLANIVAAELGAGIRVTSGPAIERSGDLAAILTSLAEGDVLFIDEIHRIAKPAEE 125

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LY AMEDF++D++VG+GP A ++ +++  FTL+ ATTR GLLT P++DRFG    L+FY
Sbjct: 126 LLYSAMEDFRVDVVVGKGPGATAIPLDVEPFTLVGATTRSGLLTGPMRDRFGFVAHLDFY 185

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
              DL+T++ R A++ G+ +TD+ A EIA RSRGTPRIA RLLRRVRD+AEV     +T 
Sbjct: 186 APADLETLLHRSARILGVPITDDGAAEIAGRSRGTPRIANRLLRRVRDYAEVRADGVVTL 245

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           + A +AL    +D +G D+LD   LT +  +F GGPVG+ T++  + E  D +E++ EP+
Sbjct: 246 DTARSALTVYDVDALGLDRLDRAVLTALVDSFRGGPVGLSTLAVAVGEQPDTVEEVCEPF 305

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +++ G + RTPRGR+    AW+HLG   P+
Sbjct: 306 LVRAGLLARTPRGRVATEAAWRHLGRTPPN 335


>gi|260903851|ref|ZP_05912173.1| Holliday junction DNA helicase RuvB [Brevibacterium linens BL2]
          Length = 360

 Score =  339 bits (869), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 159/331 (48%), Positives = 226/331 (68%), Gaps = 1/331 (0%)

Query: 3   DREGLLS-RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           + E L+S R  + E    + LRP+ L++F GQ +    L + ++AAKAR  A DHVL  G
Sbjct: 25  EEERLVSGRAETAERDAEAALRPKGLQDFIGQPQVREQLSLVLDAAKARNRAPDHVLLSG 84

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+  + R TSGP +  AGDLAA+L++LE+ +VLFIDEIHR++   
Sbjct: 85  PPGLGKTTLAMIIAHEMQSSLRVTSGPAVQHAGDLAAILSSLEEGEVLFIDEIHRMARAA 144

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMEDF++D++VG+GP A ++ ++L +FT++ ATTR GLL  PL+DRFG    L+
Sbjct: 145 EEMLYVAMEDFRVDVIVGKGPGATAIPLDLPQFTMVGATTRSGLLPAPLRDRFGFTGLLD 204

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY   DL T+++R A + G+        EI+ RSRGTPR+A RLLRRVRD+A+V     I
Sbjct: 205 FYSSNDLLTVLKRSAHMLGIEAELAGLKEISTRSRGTPRVANRLLRRVRDWAQVRGTGII 264

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
               A +AL    +D++G D+LD   L ++ + FGGGPVG+ TI+  + E  D +E + E
Sbjct: 265 DEAAALSALKVYEVDELGLDRLDRSVLQVLCKRFGGGPVGLGTIAVSVGEEADTVETVSE 324

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           PY++++G I RTPRGR+    AW+HLG+ IP
Sbjct: 325 PYLVREGLISRTPRGRVATSAAWKHLGMQIP 355


>gi|225869523|ref|YP_002745470.1| Holliday junction DNA helicase, subunit B [Streptococcus equi
           subsp. equi 4047]
 gi|254767441|sp|C0M7R2|RUVB_STRE4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|225698927|emb|CAW91941.1| Holliday junction DNA helicase, subunit B [Streptococcus equi
           subsp. equi 4047]
          Length = 335

 Score =  339 bits (869), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 167/327 (51%), Positives = 224/327 (68%), Gaps = 1/327 (0%)

Query: 6   GLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
            +L  ++  ++  +   LRP+ L E+ GQ      L +FIEAAK R E+LDHVL  G PG
Sbjct: 3   RILDNDLIGDEGSVERTLRPQYLREYIGQDRVKDQLMIFIEAAKRREESLDHVLLFGSPG 62

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTT+A V+A ELGV+ + TSGP I KAGDL A+L +LE  DVLFIDEIHR+ + VEEI
Sbjct: 63  LGKTTMAFVIANELGVHLKQTSGPAIEKAGDLVAILNDLEPGDVLFIDEIHRMPMAVEEI 122

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LY AMEDF +D+M+G G ++RSV + L  FTLI ATTR G+L+NPL+ RFGI   + +Y+
Sbjct: 123 LYSAMEDFYIDIMIGAGDTSRSVHLELPPFTLIGATTRAGMLSNPLRARFGITGHMEYYQ 182

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
             DL  IV+R A +  + +  EAA E+A RSRGTPRIA RLL+RVRD+A++     IT +
Sbjct: 183 TADLTEIVERTADIFDMTIKHEAAYELARRSRGTPRIANRLLKRVRDYAQIMGDGMITTQ 242

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           I D AL  L +D+ G D +D + L  +   + GGPVG+ T+S  ++E RD +ED+ EPY+
Sbjct: 243 ITDKALTMLDVDQEGLDYVDQKILRTMIEVYQGGPVGLGTLSVNIAEERDTVEDMYEPYL 302

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           IQ+GFI RT  GR++   A+QHLG   
Sbjct: 303 IQKGFIMRTRTGRVVTEKAYQHLGYPY 329


>gi|55980375|ref|YP_143672.1| Holliday junction DNA helicase RuvB [Thermus thermophilus HB8]
 gi|62287409|sp|Q5SL87|RUVB_THET8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|20330535|dbj|BAA76480.2| RuvB [Thermus thermophilus]
 gi|55771788|dbj|BAD70229.1| RuvB, Holliday junciton DNA helicase [Thermus thermophilus HB8]
          Length = 324

 Score =  339 bits (869), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 174/313 (55%), Positives = 227/313 (72%), Gaps = 1/313 (0%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            LRP+TL+E+ GQ      L+V++EAAKAR E L+H+L  GPPGLGKTTLA V+A ELGV
Sbjct: 5   ALRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGV 64

Query: 81  NFRSTSGPVIAKAGDLAALLTN-LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
           N R TSGP I K GDLAA+L N LE+ D+LFIDEIHRLS   EE LYPAMEDF +D+++G
Sbjct: 65  NLRVTSGPAIEKPGDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIG 124

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199
           +GP+AR++++ L RFTLI ATTR GL+T PL  RFGI   L +Y  E+L   V R A+L 
Sbjct: 125 QGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLL 184

Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259
           G+ +T+EAA EI  RSRGT R+A RL RRVRDFA+VA  + ITRE A  AL  L +D++G
Sbjct: 185 GVRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAALGLDELG 244

Query: 260 FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLL 319
            ++ D   L ++   FGGGPVG+ T++  LSE    +E++ EPY+I+QG ++RTPRGR+ 
Sbjct: 245 LEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRTPRGRVA 304

Query: 320 MPIAWQHLGIDIP 332
             +A++HLG   P
Sbjct: 305 TELAYRHLGYPPP 317


>gi|288574885|ref|ZP_06393242.1| Holliday junction DNA helicase RuvB [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570626|gb|EFC92183.1| Holliday junction DNA helicase RuvB [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 344

 Score =  338 bits (868), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 170/334 (50%), Positives = 238/334 (71%), Gaps = 5/334 (1%)

Query: 2   MDR--EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M+R  + ++  +VS++D D+S LRP +LE+FTGQ    + L ++++AA+ R E LDH LF
Sbjct: 1   MERMEDRIV--DVSEKDDDLS-LRPLSLEDFTGQESIKNKLGIYVKAARQRGEPLDHSLF 57

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++ARE+G + R T+GP + K GDLAA+L+NL+D DVLFIDEIHR++ 
Sbjct: 58  YGPPGLGKTTLAGIIAREMGGDLRITTGPALEKTGDLAAILSNLQDNDVLFIDEIHRMNS 117

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            +EE+LY AMEDF L ++VG+GP AR++ ++L +FTL+ ATTR+GLLT+PL+ RFGI  +
Sbjct: 118 SIEEVLYSAMEDFSLHIIVGKGPLARNICLSLPKFTLVGATTRLGLLTSPLRARFGIVEQ 177

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L+ Y  E+L +I+ RGA +  +++  EAA  IA RSRGTPRIA R+LRRVRD AEVA   
Sbjct: 178 LSLYSTEELASIISRGAGVLNVSIEGEAALLIAGRSRGTPRIALRILRRVRDVAEVAGDG 237

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT  IA+ A+  L +D  G D  D R L  +   F GGPVG+ T++A L+E    +ED+
Sbjct: 238 VITPAIAERAMSMLGLDGFGLDDGDRRILEALVDLFSGGPVGLSTVAASLNEESQTVEDI 297

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            EPY++Q G ++RTPRGR      +++LG   P 
Sbjct: 298 YEPYLLQLGLLERTPRGRKATARTYEYLGRRPPR 331


>gi|302533403|ref|ZP_07285745.1| Holliday junction DNA helicase RuvB [Streptomyces sp. C]
 gi|302442298|gb|EFL14114.1| Holliday junction DNA helicase RuvB [Streptomyces sp. C]
          Length = 356

 Score =  338 bits (868), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 156/329 (47%), Positives = 219/329 (66%), Gaps = 1/329 (0%)

Query: 5   EGLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           + +++     ED A  + LRP+ L EF GQ +    L + ++AA+ R    DHVL  G P
Sbjct: 12  DRIVAAAADGEDTAVEAALRPKDLGEFVGQEKVRQQLDLVLKAARQRGATADHVLLSGAP 71

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTL+ ++A E+G   R TSGP I  AGDLAA+L++L++ +VLF+DEIHR+S   EE
Sbjct: 72  GLGKTTLSMIIAAEMGAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEE 131

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LY AMEDF++D++VG+GP A ++ + L  FTL+ ATTR GLL  PL+DRFG    + FY
Sbjct: 132 MLYMAMEDFRVDVIVGKGPGATAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTGHMEFY 191

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
              +L+ +V R A L  + +    A EIA RSRGTPRIA RLLRRVRD+A+V     ITR
Sbjct: 192 APAELERVVHRSAGLLDVEIDTAGAAEIAGRSRGTPRIANRLLRRVRDYAQVKADGVITR 251

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           E+A  AL    +D  G D+LD   L  + + FGGGPVG+ T++  + E R+ +E++ EP+
Sbjct: 252 EVAATALQVYEVDARGLDRLDRAVLEALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPF 311

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++++G + RTPRGR+  P AW HLG+  P
Sbjct: 312 LVREGLLARTPRGRIATPAAWAHLGLVPP 340


>gi|88602183|ref|YP_502361.1| Holliday junction DNA helicase RuvB [Methanospirillum hungatei
           JF-1]
 gi|97190136|sp|Q2FPZ8|RUVB_METHJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|88187645|gb|ABD40642.1| Holliday junction DNA helicase subunit RuvB [Methanospirillum
           hungatei JF-1]
          Length = 337

 Score =  338 bits (868), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 171/325 (52%), Positives = 229/325 (70%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           +   +S     E+ D   +RP  L +F GQ      L V I +A+ R + LDH+LF GPP
Sbjct: 2   QTRFVSPVNHDEEQDEPSVRPGLLADFIGQDSIKDALTVAITSARKRNKPLDHILFSGPP 61

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++A+E+  +  +TSGPV+ + GDLAALLT L+DRD LFIDEIHRLS ++EE
Sbjct: 62  GLGKTTLAHIIAQEMNSHIETTSGPVLDRPGDLAALLTPLKDRDFLFIDEIHRLSPVIEE 121

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILYPAMED+ +DL++GEGPSAR++++ L RFTLI ATTR+GLL +P +DRFGI +RL+ Y
Sbjct: 122 ILYPAMEDYTIDLLIGEGPSARTIQLPLERFTLIGATTRLGLLGSPFRDRFGIILRLDLY 181

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           +  +L  IV R A + G+ +T E A EIA RSRGTPRIA RLL+R  D+A V    +I +
Sbjct: 182 DPSELTVIVTRSAGILGIPITPEGAAEIAGRSRGTPRIANRLLKRAYDYAIVRGTGSIDQ 241

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
            IA+ AL  L +D+ G D LD R L +IA +F GGPVG++TIS  + E    IED+ EPY
Sbjct: 242 NIANTALFALGVDQKGLDILDRRILEVIANDFDGGPVGLKTISISVGEEPRTIEDVYEPY 301

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLG 328
           +I+ GF++RTP+GR++   A  HLG
Sbjct: 302 LIRIGFLKRTPQGRMITSAARDHLG 326


>gi|145594354|ref|YP_001158651.1| Holliday junction DNA helicase RuvB [Salinispora tropica CNB-440]
 gi|189046047|sp|A4X5X3|RUVB_SALTO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|145303691|gb|ABP54273.1| Holliday junction DNA helicase RuvB [Salinispora tropica CNB-440]
          Length = 354

 Score =  338 bits (868), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 159/331 (48%), Positives = 222/331 (67%), Gaps = 1/331 (0%)

Query: 2   MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M  + L+S  VS  + D+   +RPR L EF  Q      L + ++ A  R    DH+L  
Sbjct: 1   MTGDNLVSAYVSDAERDVEASVRPRRLAEFIAQERVRDQLDLLLQGALRRGSPPDHILLS 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKT+LA +VA ELG + R TSGP I ++GDLAA+LT+L + DVLFIDE+HR++  
Sbjct: 61  GPPGLGKTSLANIVAAELGTSIRVTSGPAIERSGDLAAILTSLGEGDVLFIDEVHRIARP 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            EE+LY AMEDF++D++VG+GP A ++ +++  FTL+ ATTR GLLT P++DRFG    L
Sbjct: 121 AEELLYSAMEDFRVDVVVGKGPGATAIPLDVEPFTLVGATTRAGLLTGPMRDRFGFVAHL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           +FY   DL+T++ R A++ G+ +T + A EI+ R+RGTPRIA RLLRRVRDFAEV     
Sbjct: 181 DFYSPADLETLLNRSARILGVPITADGAAEISGRARGTPRIANRLLRRVRDFAEVRADGV 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +TRE A AAL    +D +G D+LD   LT +   F GGPVG+ T++  + E  D +E++ 
Sbjct: 241 VTRETAQAALTVYDVDALGLDRLDRAVLTALVDLFRGGPVGLSTLAVAVGEQPDTVEEVC 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           EP++++ G + RTPRGR+    AW HLG   
Sbjct: 301 EPFLVRAGLLARTPRGRVATEAAWHHLGRTP 331


>gi|24987363|pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
          Length = 318

 Score =  338 bits (868), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 174/313 (55%), Positives = 227/313 (72%), Gaps = 1/313 (0%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            LRP+TL+E+ GQ      L+V++EAAKAR E L+H+L  GPPGLGKTTLA V+A ELGV
Sbjct: 5   ALRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGV 64

Query: 81  NFRSTSGPVIAKAGDLAALLTN-LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
           N R TSGP I K GDLAA+L N LE+ D+LFIDEIHRLS   EE LYPAMEDF +D+++G
Sbjct: 65  NLRVTSGPAIEKPGDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIG 124

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199
           +GP+AR++++ L RFTLI ATTR GL+T PL  RFGI   L +Y  E+L   V R A+L 
Sbjct: 125 QGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLL 184

Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259
           G+ +T+EAA EI  RSRGT R+A RL RRVRDFA+VA  + ITRE A  AL  L +D++G
Sbjct: 185 GVRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAALGLDELG 244

Query: 260 FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLL 319
            ++ D   L ++   FGGGPVG+ T++  LSE    +E++ EPY+I+QG ++RTPRGR+ 
Sbjct: 245 LEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRTPRGRVA 304

Query: 320 MPIAWQHLGIDIP 332
             +A++HLG   P
Sbjct: 305 TELAYRHLGYPPP 317


>gi|152993673|ref|YP_001359394.1| Holliday junction DNA helicase RuvB [Sulfurovum sp. NBC37-1]
 gi|166231562|sp|A6QC28|RUVB_SULNB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|151425534|dbj|BAF73037.1| holliday junction DNA helicase RuvB [Sulfurovum sp. NBC37-1]
          Length = 337

 Score =  338 bits (868), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 172/326 (52%), Positives = 233/326 (71%), Gaps = 2/326 (0%)

Query: 5   EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E ++      E+A   + LRP + +E+ GQ +   NLKVFIEA+K R EALDH+LF GPP
Sbjct: 2   ERMVEIERFDEEASYEVTLRPSSWDEYIGQEKIKKNLKVFIEASKRREEALDHILFFGPP 61

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++A E+  N ++T+ P+I KAGDLAALLTN+E+ D+LFIDEIHR+S  +EE
Sbjct: 62  GLGKTTLANIIASEMHTNIKTTAAPMIEKAGDLAALLTNIEEGDILFIDEIHRMSPAIEE 121

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILYPAMEDF+LD+++G GP+A++VKI+L RFTLI ATTR G+L+NPL++RFG+  R+ FY
Sbjct: 122 ILYPAMEDFRLDIIIGSGPAAQTVKIDLPRFTLIGATTRAGMLSNPLRERFGMHFRMQFY 181

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
             E+L  IV + +         EAA EIA RSRGTPRIA RLL+RVRDF+EVA+   +T 
Sbjct: 182 TPEELAKIVSQASHKLEKPSKAEAAHEIARRSRGTPRIALRLLKRVRDFSEVANENEVTL 241

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           E A  AL  L ++ +GFD+ D+R L ++       P+G+ TI A LSE    IED++EPY
Sbjct: 242 ERARYALDELGVNDLGFDEQDIRLLELLVSA-KNKPMGLSTIGAALSEDEGTIEDVLEPY 300

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGI 329
           +I  G+I+RT RGR+  P  ++H  +
Sbjct: 301 LIANGYIERTARGRIATPKCYEHFKL 326


>gi|282864187|ref|ZP_06273243.1| Holliday junction DNA helicase RuvB [Streptomyces sp. ACTE]
 gi|282560674|gb|EFB66220.1| Holliday junction DNA helicase RuvB [Streptomyces sp. ACTE]
          Length = 361

 Score =  338 bits (867), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 159/330 (48%), Positives = 220/330 (66%), Gaps = 1/330 (0%)

Query: 5   EGLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           + L+      ED A  + LRP+ L EF GQ +    L + ++AA AR    DHVL  G P
Sbjct: 20  DRLVDGGADGEDTAVEAALRPKDLGEFIGQEKVREQLDLVLKAALARGATADHVLLSGAP 79

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTL+ ++A E+    R TSGP I  AGDLAA+L++L++ +VLF+DEIHR+S   EE
Sbjct: 80  GLGKTTLSMIIAAEMNAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEE 139

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LY AMEDF++D++VG+GP A ++ + L  FTL+ ATTR GLL  PL+DRFG    + FY
Sbjct: 140 MLYMAMEDFRVDVIVGKGPGATAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTAHMEFY 199

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
              +L+ +V R A L  +A+  + A EIA RSRGTPRIA RLLRRVRD+A+V     I R
Sbjct: 200 APTELERVVHRSAGLLDVAIDTDGAAEIAGRSRGTPRIANRLLRRVRDYAQVKAEGRIDR 259

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           EIA AAL    +D+ G D+LD   L  + + FGGGPVG+ T++  + E R+ +E++ EP+
Sbjct: 260 EIAAAALRVYEVDERGLDRLDRGVLEALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPF 319

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           ++++G + RTPRGR+  P AW HLG+  P 
Sbjct: 320 LVREGLLARTPRGRVATPAAWAHLGLVPPQ 349


>gi|302527850|ref|ZP_07280192.1| Holliday junction DNA helicase RuvB [Streptomyces sp. AA4]
 gi|302436745|gb|EFL08561.1| Holliday junction DNA helicase RuvB [Streptomyces sp. AA4]
          Length = 358

 Score =  338 bits (867), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 160/328 (48%), Positives = 221/328 (67%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           E L +   + E    + LRPR L+EF GQ      L++ +E+A+ R    DHVL  GPPG
Sbjct: 14  ETLSALAQTGERDLETSLRPRKLDEFVGQERVREQLELVLESARRRDVPPDHVLLSGPPG 73

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKT++A +VA ELG   R TSGP + +AGDLAA+L+NL   DVLFIDEIHR++   EE+
Sbjct: 74  LGKTSMAMIVAAELGAAIRITSGPALERAGDLAAMLSNLAPGDVLFIDEIHRIARPAEEM 133

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LY AMEDF++D++VG+GP A S+ + ++ FTL+ ATTR G LT PL+DRFG   ++ FY 
Sbjct: 134 LYLAMEDFRVDVVVGKGPGATSIPLEIAPFTLVGATTRSGSLTGPLRDRFGFTGQMEFYS 193

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
             +L+ +V+R A + G+ +  +   EIA RSRGTPRIA RLLRRVRD+AEV     +T E
Sbjct: 194 AAELELVVRRAATILGIEIDRDGCAEIAGRSRGTPRIANRLLRRVRDYAEVRADGKVTLE 253

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +A AAL    +D++G D+LD   L  + R+FGGGPVGI T++  + E    +E++ EPY+
Sbjct: 254 VAQAALKVYDVDELGLDRLDRAVLGALTRSFGGGPVGISTLAVAVGEEATTVEEVCEPYL 313

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++ G + RTPRGR+    AW HLG+  P
Sbjct: 314 VRAGMLARTPRGRVATAAAWHHLGLVPP 341


>gi|297155805|gb|ADI05517.1| Holliday junction DNA helicase RuvB [Streptomyces bingchenggensis
           BCW-1]
          Length = 358

 Score =  338 bits (867), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 158/330 (47%), Positives = 219/330 (66%), Gaps = 1/330 (0%)

Query: 6   GLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
            L+  +   ED A  + LRP+ L EF GQ      L + ++AA+ R    DHVL  G PG
Sbjct: 18  RLVGADADGEDQAVEAALRPKDLGEFVGQERVREQLDLVLKAARQRGATADHVLLSGAPG 77

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTL+ ++A E+G   R TSGP I  AGDLAA+L++L + +VLF+DEIHR+S   EE+
Sbjct: 78  LGKTTLSMIIAAEMGAPIRITSGPAIQHAGDLAAILSSLAEGEVLFLDEIHRMSRPAEEM 137

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LY AMEDF++D++VG+GP A ++ + L  FTL+ ATTR GLL  PL+DRFG    + FY 
Sbjct: 138 LYMAMEDFRVDVIVGKGPGATAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTGHMEFYA 197

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
             +L+ ++ R A L  + +  E A EIA RSRGTPRIA RLLRRVRD+A+V     +TRE
Sbjct: 198 PAELERVIHRSAGLLDVVIEAEGAGEIAGRSRGTPRIANRLLRRVRDYAQVKADGVVTRE 257

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           IA  AL    +D  G D+LD   LT + + FGGGPVG+ T++  + E R+ +E++ EP++
Sbjct: 258 IAARALAVYDVDGRGLDRLDRAVLTALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPFL 317

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           +++G + RTPRGR+  P AW HLG+  P +
Sbjct: 318 VREGLLARTPRGRIATPAAWTHLGLTPPQQ 347


>gi|167564064|ref|ZP_02356980.1| Holliday junction DNA helicase B [Burkholderia oklahomensis EO147]
          Length = 339

 Score =  338 bits (867), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 189/321 (58%), Positives = 235/321 (73%), Gaps = 3/321 (0%)

Query: 5   EGLL--SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           E ++  +   + E+A    LRPR L+E+ GQ +    L++FIEAAK R+EALDHVL  GP
Sbjct: 10  ERIIAATPASTHEEAFERALRPRQLDEYVGQEKVRDQLEIFIEAAKRRSEALDHVLLFGP 69

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++ARE+GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VE
Sbjct: 70  PGLGKTTLAHIIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVE 129

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILYPA+ED+Q+D+M+GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL F
Sbjct: 130 EILYPALEDYQIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEF 189

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y+ E L  IV+R A L    +    A EIA RSRGTPRIA RLLRRVRD+AEV    +IT
Sbjct: 190 YDAEQLSRIVRRSAALLNAQIDPNGALEIAKRSRGTPRIANRLLRRVRDYAEVRADGSIT 249

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             +ADAAL  L +D +GFD +D + L  I   F GGPVG++ ++A + E RD IED++EP
Sbjct: 250 AAVADAALAMLDVDPVGFDLMDRKLLEAILHKFDGGPVGVDNLAAAIGEERDTIEDVLEP 309

Query: 303 YMIQQGFIQRT-PRGRLLMPI 322
           Y+IQQGF     PR R   P 
Sbjct: 310 YLIQQGFFAAHAPRPRRDAPH 330


>gi|320108574|ref|YP_004184164.1| Holliday junction DNA helicase RuvB [Terriglobus saanensis SP1PR4]
 gi|319927095|gb|ADV84170.1| Holliday junction DNA helicase RuvB [Terriglobus saanensis SP1PR4]
          Length = 355

 Score =  338 bits (867), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 180/333 (54%), Positives = 243/333 (72%), Gaps = 1/333 (0%)

Query: 3   DREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           + + ++S + + +DA   L LRP  L EF GQ +A   L + +EAAKAR EALDHVL  G
Sbjct: 19  EADRIVSASTTDDDAAFELKLRPHHLREFIGQEKAKEQLAIALEAAKARGEALDHVLLFG 78

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A ELGV ++ TSGP +   GDL A+LTNL +R VLF+DEIHRL  ++
Sbjct: 79  PPGLGKTTLATIIANELGVGYQQTSGPALQIQGDLTAILTNLRERQVLFLDEIHRLQPVL 138

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE LY A+ED+QLD+++G+GPSAR+  + +  FT +AATTR GLL++PL+ RFGI +RL 
Sbjct: 139 EEKLYTALEDYQLDIIIGQGPSARTHVMEIRPFTFVAATTRPGLLSSPLRSRFGILLRLE 198

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY  ++L+ IV+R A++ G+ +  + A EIAMRSRGTPRIA RLLRRVRDFAEV    TI
Sbjct: 199 FYTDDELRYIVERSAEVIGVTIDQDGAAEIAMRSRGTPRIANRLLRRVRDFAEVRANGTI 258

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
            RE A  AL  L +D  GFD+LD R L  I   + GGPVG+ T++A L+E  DA+E++ E
Sbjct: 259 DRETAQKALAMLEVDAHGFDELDRRLLRTIIEKYDGGPVGLNTLAAALAEEEDALEEVYE 318

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           P++IQ GF+ RTPRGR+   +A++HLGI++P +
Sbjct: 319 PFLIQIGFLDRTPRGRVATRLAYEHLGIEMPRK 351


>gi|154248851|ref|YP_001409676.1| Holliday junction DNA helicase RuvB [Fervidobacterium nodosum
           Rt17-B1]
 gi|171769318|sp|A7HJD6|RUVB_FERNB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|154152787|gb|ABS60019.1| Holliday junction DNA helicase RuvB [Fervidobacterium nodosum
           Rt17-B1]
          Length = 347

 Score =  338 bits (867), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 163/328 (49%), Positives = 226/328 (68%), Gaps = 2/328 (0%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
            E ++S   +  D+    LRP+ L E+ GQ      LK+ I+A+K R E LDH+L  GPP
Sbjct: 9   SERIVSPERTGYDS--YSLRPKFLSEYIGQENIKERLKLAIQASKMRGEQLDHILLAGPP 66

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++A EL  N   TSGP++ K GDLAA+LTNLE  DVLFIDEIHR++  VEE
Sbjct: 67  GLGKTTLATIIANELNANIHVTSGPILEKQGDLAAILTNLEAGDVLFIDEIHRMNRNVEE 126

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILY AMEDFQ+D+M+G+GP+ARS+++ L  FTLI ATTR GLLT+PL++RFG+   +NFY
Sbjct: 127 ILYSAMEDFQVDIMIGKGPAARSIRVELQPFTLIGATTRSGLLTSPLRNRFGMIFEMNFY 186

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
             E+LK I+ R A++ G  + D+AA  IA RSRGTPRIA RLL+RVRD + V  ++ IT 
Sbjct: 187 TQEELKMIITRAAEVMGTLIDDDAALSIAKRSRGTPRIAIRLLKRVRDLSTVRGSENITL 246

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
            I +  +  L +D+ G D++D + L  I   + GGPVG+++++A L    D I ++ EP+
Sbjct: 247 NIVEEVMRLLGVDEFGLDEMDRKILKTIIEIYKGGPVGLKSLAASLGITEDTISEVYEPF 306

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           ++Q GFI R  RGR+    A+++LG + 
Sbjct: 307 LVQSGFIARGARGRIATEKAYKYLGYNT 334


>gi|152966997|ref|YP_001362781.1| Holliday junction DNA helicase RuvB [Kineococcus radiotolerans
           SRS30216]
 gi|151361514|gb|ABS04517.1| Holliday junction DNA helicase RuvB [Kineococcus radiotolerans
           SRS30216]
          Length = 355

 Score =  338 bits (866), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 160/332 (48%), Positives = 224/332 (67%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M+   + +    +E A  S LRP  L+EF GQ      L + ++AAKAR    DHVLF G
Sbjct: 1   MEDRLVTTGADERERAAESALRPHGLDEFVGQKVVREQLALVLDAAKARGMPSDHVLFSG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA +VA E+G   R +SGP I  AGDLAA+L++L++ +VLF+DEIHR++   
Sbjct: 61  PPGLGKTTLAMIVASEMGAPLRQSSGPAIQHAGDLAAVLSSLDEGEVLFLDEIHRMARPA 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMED+++D++VG+GP A ++ + L +FTL+ ATTR GLL  PL+DRFG    L+
Sbjct: 121 EEMLYIAMEDYRVDVVVGKGPGATAIPLELPKFTLVGATTRAGLLPAPLRDRFGFTGYLD 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY  E+L  +++R A L G+ +T E A EI  RSRGTPRIA RLLRRVRD+A+V  +  +
Sbjct: 181 FYTPEELVKVLRRSASLLGVQLTAEGAAEIGGRSRGTPRIANRLLRRVRDWAQVRGSGIV 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
            R  A AAL    +D+ G D+LD   L  + R FGGGPVG+ T++  + E  + +E + E
Sbjct: 241 DRHAARAALEVYEVDERGLDRLDRAVLDALCRRFGGGPVGLSTLAVVVGEEAETVETVAE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           P+++++G + RTPRGR+ +P  W HLG+  P 
Sbjct: 301 PFLVREGLLGRTPRGRIALPDTWAHLGLTPPR 332


>gi|320093777|ref|ZP_08025624.1| crossover junction ATP-dependent DNA helicase RuvB [Actinomyces sp.
           oral taxon 178 str. F0338]
 gi|319979278|gb|EFW10774.1| crossover junction ATP-dependent DNA helicase RuvB [Actinomyces sp.
           oral taxon 178 str. F0338]
          Length = 349

 Score =  338 bits (866), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 160/329 (48%), Positives = 220/329 (66%), Gaps = 1/329 (0%)

Query: 6   GLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
            +++ +  + E A  + LRP+ L EF GQ      L++ ++AA+ R  + DHVL  GPPG
Sbjct: 14  RVVAPDAGEIERAAEAALRPKRLAEFVGQRVVRGQLQLVLDAARGRGASPDHVLLAGPPG 73

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLA ++A E+G + R TSGP I  AGDLAA+L+ L++ D+LFIDEIHRL+   EE+
Sbjct: 74  LGKTTLAMIIAAEMGTSLRLTSGPAIQHAGDLAAILSGLQEGDILFIDEIHRLARTAEEM 133

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LY AMEDF++D++VG+GP A S+ + L RFT + ATTR GLL  PL+DRFG    L FYE
Sbjct: 134 LYLAMEDFRVDVVVGKGPGATSIPLTLPRFTAVGATTRSGLLPAPLRDRFGFTAHLEFYE 193

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            ++L+ +V R A L G  + + AA EIA RSRGTPRIA RLLRRV D+A+V      T  
Sbjct: 194 TDELEQVVARSASLLGAPLGEGAAHEIASRSRGTPRIANRLLRRVVDYAQVHGDGAATLG 253

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
            A AAL    +D +G D+LD   L  + + F GGPVG+ T+S  + E  + +E + EPY+
Sbjct: 254 AARAALALFEVDPLGLDRLDRAVLEAVCKRFAGGPVGLTTLSVTIGEEAETVETVAEPYL 313

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +++GF+ RT RGR+  P AW+HLG+  P 
Sbjct: 314 VREGFLVRTNRGRMATPRAWEHLGLAPPD 342


>gi|315187236|gb|EFU20993.1| Holliday junction DNA helicase subunit RuvB [Spirochaeta
           thermophila DSM 6578]
          Length = 342

 Score =  338 bits (866), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 167/327 (51%), Positives = 212/327 (64%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           +  LS    +EDA    LRP +L EF G+ E   NLKVFI AA+ R EALDHV   GPPG
Sbjct: 2   DHTLSPLKREEDAQEERLRPLSLSEFQGKEEIKENLKVFIRAARQRGEALDHVFLSGPPG 61

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTL  ++A ELGV  R TS P + K  DLA +LT L  R VLFIDEIHRL   +EE+
Sbjct: 62  LGKTTLGSIIAHELGVELRITSAPALEKPKDLAGILTTLSPRSVLFIDEIHRLKPAIEEM 121

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LY AMED+ +D ++G+GPSAR+V+I +  FTL+ ATT+ G L  PL  RFGI    N YE
Sbjct: 122 LYVAMEDYVIDWIIGQGPSARTVRIPVPPFTLVGATTKAGKLATPLVSRFGITFHFNLYE 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            ED+  +++R A++ GL+V + A   ++  SRGTPRIA R+LRR RDFAEV     IT +
Sbjct: 182 KEDIIKVLRRSARILGLSVEEPAFDLLSSCSRGTPRIANRMLRRARDFAEVYGKGVITPQ 241

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           I    + RL ID+ G +  D R L  I   F GGPVG E+++  L E  D +ED  EPY+
Sbjct: 242 IVRLTMDRLGIDEAGLEAHDRRILDTIITKFDGGPVGAESLAIALGESVDTLEDFYEPYL 301

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           IQ GF+QRTPRGR++ P  + HL I  
Sbjct: 302 IQCGFLQRTPRGRIVTPRGYDHLNIPP 328


>gi|296270036|ref|YP_003652668.1| Holliday junction DNA helicase RuvB [Thermobispora bispora DSM
           43833]
 gi|296092823|gb|ADG88775.1| Holliday junction DNA helicase RuvB [Thermobispora bispora DSM
           43833]
          Length = 349

 Score =  337 bits (865), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 161/333 (48%), Positives = 222/333 (66%), Gaps = 1/333 (0%)

Query: 1   MMDREGLLSRN-VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M     L+S   V  E    + LRP+ L EF GQ      L + +E+A+ R    DHVL 
Sbjct: 1   MSVERDLVSPEPVGDEPVIEATLRPKRLSEFIGQQRVREQLSLVLESARRRRRPPDHVLM 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            G PGLGKTTLA ++A ELG   R TSGP + +AGDLAA+L+ L + +VLFIDEIHR++ 
Sbjct: 61  SGGPGLGKTTLALIIAAELGAPIRMTSGPALERAGDLAAILSTLTEGEVLFIDEIHRMAR 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
             EE+LY AMEDF++D++VG+GP A S+ + ++ FTL+ ATTR GLL  PL+DRFG    
Sbjct: 121 PAEEMLYLAMEDFRIDVVVGKGPGATSIPLEIAPFTLVGATTRAGLLPAPLRDRFGFTAH 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           ++FYE+ +L+ ++ R A+L G  + ++ A EIA RSRGTPRIA RLLRRVRD+AEV    
Sbjct: 181 MDFYEVAELEQVLHRSARLLGADLREDGAHEIAKRSRGTPRIANRLLRRVRDYAEVRAQG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            ITRE+A AAL    +D  G D+LD   L  + R FGGGPVG+ T++  + E  + +E +
Sbjct: 241 VITREVAAAALDLYEVDAEGLDRLDRAVLEALLRKFGGGPVGLSTLAVAVGEEPETVEIV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
            EP++++QG + RTPRGR+   +AW+H G+  P
Sbjct: 301 AEPFLVRQGLLARTPRGRVATALAWKHFGLTPP 333


>gi|257462825|ref|ZP_05627231.1| Holliday junction DNA helicase RuvB [Fusobacterium sp. D12]
 gi|317060454|ref|ZP_07924939.1| holliday junction DNA helicase ruvB [Fusobacterium sp. D12]
 gi|313686130|gb|EFS22965.1| holliday junction DNA helicase ruvB [Fusobacterium sp. D12]
          Length = 334

 Score =  337 bits (865), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 171/320 (53%), Positives = 225/320 (70%), Gaps = 1/320 (0%)

Query: 5   EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E ++S      + ++   LRPRT +E+ GQ      + + I+AAK R   +DHVL  GPP
Sbjct: 2   ERIVSEFEIPNEIEVQRNLRPRTFQEYIGQESLKEKIFISIQAAKRRGTVIDHVLLYGPP 61

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA V+A E+G N + TSGPV+ KAGDLAA+LT+LE+ DVLFIDEIHRL+  VEE
Sbjct: 62  GLGKTTLAGVIANEMGSNLKITSGPVLEKAGDLAAILTSLEENDVLFIDEIHRLNTAVEE 121

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILYPAMED +LD+++G+GP+ARS++I L  FTLI ATTR GLL+ PL+DRFGI  ++ +Y
Sbjct: 122 ILYPAMEDRELDIIIGKGPAARSIRIELPNFTLIGATTRAGLLSAPLRDRFGISHKMEYY 181

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
              ++K I+ RG K+  + V    A E+A RSRGTPRIA RLL+RVRD+AE+     IT+
Sbjct: 182 TEREVKEIILRGGKILEVEVEQAGAEELAKRSRGTPRIANRLLKRVRDYAEIRGEGIITK 241

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
            IA  AL  L +D  G D+LD   L  I  N+GGGPVGIET+S  L E R  +E++ EPY
Sbjct: 242 NIAIQALNLLGVDVEGLDELDRNILHAIFENYGGGPVGIETLSLLLGEDRRTLEEVYEPY 301

Query: 304 MIQQGFIQRTPRGRLLMPIA 323
           +IQ+GF++RT RGR+    A
Sbjct: 302 LIQKGFLKRTTRGRVATSKA 321


>gi|227496220|ref|ZP_03926519.1| crossover junction endoribonuclease subunit B [Actinomyces
           urogenitalis DSM 15434]
 gi|226834251|gb|EEH66634.1| crossover junction endoribonuclease subunit B [Actinomyces
           urogenitalis DSM 15434]
          Length = 347

 Score =  337 bits (865), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 155/320 (48%), Positives = 211/320 (65%), Gaps = 1/320 (0%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E A  + LRP+ LE+F GQ      L V + AA +R    DHVL  GPPGLGKTTLA ++
Sbjct: 22  ERAAEAALRPKRLEDFVGQEVVRGQLSVVLRAALSRGTTPDHVLLSGPPGLGKTTLAMII 81

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A E+  + R TSGP I  AGDLAA+L++LE+ DVLFIDEIHRL+   EE+LY AMED+++
Sbjct: 82  AAEVEGSLRLTSGPAIQHAGDLAAILSSLEEGDVLFIDEIHRLARTAEEMLYLAMEDYRV 141

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D++VG+GP A S+ ++L  FT++ ATTR GLL  PL+DRFG    L +Y   +L  I+ R
Sbjct: 142 DVVVGKGPGATSIPLSLPPFTVVGATTRAGLLPAPLRDRFGFTGHLEYYGPAELSRILAR 201

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA-KTITREIADAALLRL 253
            A L G+ +  +A  E+A RSRGTPRIA RLLRRV+D+AEV      +  E A AAL   
Sbjct: 202 SAGLLGVQLEAQAGAELARRSRGTPRIANRLLRRVQDWAEVHGTPGYLDLEAARAALEVF 261

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +D +G D+LD   L  +   FGGGPVG+ T++  + E  + +E + EPY++++G + RT
Sbjct: 262 EVDALGLDRLDRAVLEALCTRFGGGPVGLTTLAVSVGEEPETVETVAEPYLVREGLVVRT 321

Query: 314 PRGRLLMPIAWQHLGIDIPH 333
           PRGR     A++HLG+  P 
Sbjct: 322 PRGRSATAAAYEHLGLQPPE 341


>gi|320011893|gb|ADW06743.1| Holliday junction DNA helicase RuvB [Streptomyces flavogriseus ATCC
           33331]
          Length = 361

 Score =  337 bits (865), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 158/330 (47%), Positives = 220/330 (66%), Gaps = 1/330 (0%)

Query: 5   EGLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           + L+      ED A  + LRP+ L EF GQ +    L + ++AA+AR    DHVL  G P
Sbjct: 20  DRLVDAGADGEDTAVEAALRPKDLHEFVGQEKVREQLDLVLKAARARGATADHVLLSGAP 79

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTL+ ++A E+G   R TSGP I  AGDLAA+L++L++ +VLF+DEIHR+S   EE
Sbjct: 80  GLGKTTLSMIIAAEMGAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEE 139

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LY AMEDF++D++VG+GP A ++ + L  FTL+ ATTR GLL  PL+DRFG    + FY
Sbjct: 140 MLYMAMEDFRVDVIVGKGPGATAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTGHMEFY 199

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
              +L+ ++ R A L  +A+    A EIA RSRGTPRIA RLLRRVRD+A+V     I R
Sbjct: 200 APTELERVIHRSAGLLDVAIDTAGAAEIAGRSRGTPRIANRLLRRVRDYAQVKAEGRIDR 259

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           +IA AAL    +D  G D+LD   L  + + FGGGPVG+ T++  + E R+ +E++ EP+
Sbjct: 260 DIAAAALRVYEVDARGLDRLDRAVLGALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPF 319

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           ++++G + RTPRGR+  P AW HLG+  P 
Sbjct: 320 LVREGLLARTPRGRVATPAAWAHLGLVPPQ 349


>gi|13399857|pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
 gi|13399858|pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
          Length = 324

 Score =  337 bits (864), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 174/313 (55%), Positives = 227/313 (72%), Gaps = 1/313 (0%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            LRP+TL+E+ GQ      L+V++EAAKAR E L+H+L  GPPGLGKTTLA V+A ELGV
Sbjct: 5   ALRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGV 64

Query: 81  NFRSTSGPVIAKAGDLAALLTN-LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
           N R TSGP I K GDLAA+L N LE+ D+LFIDEIHRLS   EE LYPAMEDF +D+++G
Sbjct: 65  NLRVTSGPAIEKPGDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIG 124

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199
           +GP+AR++++ L RFTLI ATTR GL+T PL  RFGI   L +Y  E+L   V R A+L 
Sbjct: 125 QGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLL 184

Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259
           G+ +T+EAA EI  RSRGT R+A RL RRVRDFA+VA  + ITRE A  AL  L +D++G
Sbjct: 185 GVRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAALGLDELG 244

Query: 260 FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLL 319
            ++ D   L ++   FGGGPVG+ T++  LSE    +E++ EPY+I+QG ++RTPRGR+ 
Sbjct: 245 LEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRTPRGRVP 304

Query: 320 MPIAWQHLGIDIP 332
             +A++HLG   P
Sbjct: 305 TELAYRHLGYPPP 317


>gi|317124982|ref|YP_004099094.1| Holliday junction DNA helicase subunit RuvB [Intrasporangium calvum
           DSM 43043]
 gi|315589070|gb|ADU48367.1| Holliday junction DNA helicase subunit RuvB [Intrasporangium calvum
           DSM 43043]
          Length = 367

 Score =  337 bits (864), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 157/328 (47%), Positives = 217/328 (66%), Gaps = 1/328 (0%)

Query: 6   GLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
            ++      +D  +   LRPR L++F GQ      L + + AAK R    DHVL  GPPG
Sbjct: 17  RIVDARSDPDDRQVEAALRPRRLDDFPGQTRVRDQLGLVLRAAKGRGTPPDHVLLSGPPG 76

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLA +VA EL    R TSGP I  AGDLA++L++L + +VLF+DEIHR+S   EE+
Sbjct: 77  LGKTTLAMIVASELEQPIRITSGPAIQHAGDLASVLSSLAEGEVLFLDEIHRMSRAAEEM 136

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LY AMEDF++D+++G+GP A ++ + L  FT++ ATTR GLL  PL+DRFG    L+FY+
Sbjct: 137 LYLAMEDFRVDVIIGKGPGATAIPLELPPFTVVGATTRAGLLPAPLRDRFGFTGHLDFYD 196

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
             DL TI+ R A+L GL   ++   EI++RSRGTPRIA RLLRRVRD+A+V     +T+ 
Sbjct: 197 PSDLVTILHRSARLLGLDADEDGIVEISVRSRGTPRIANRLLRRVRDWAQVHGEDRVTQA 256

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
            A  AL    +D+ G D+LD   L  + R FGGGPVG+ T++  + E  D +E + EP++
Sbjct: 257 AARQALELFDVDERGLDRLDRAVLDALCRRFGGGPVGLSTLAVAVGEEPDTVETVAEPFL 316

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           +++GF+ RTPRGR    +AWQHLG+  P
Sbjct: 317 VREGFMVRTPRGRAASALAWQHLGLTAP 344


>gi|332707639|ref|ZP_08427667.1| holliday junction DNA helicase subunit RuvB [Lyngbya majuscula 3L]
 gi|332353548|gb|EGJ33060.1| holliday junction DNA helicase subunit RuvB [Lyngbya majuscula 3L]
          Length = 363

 Score =  337 bits (864), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 161/329 (48%), Positives = 226/329 (68%), Gaps = 1/329 (0%)

Query: 3   DREGLLSRNVSQE-DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           D + LL+   ++E       +RP+ L ++ GQ E    L++ I+AAKAR EA+DH+L  G
Sbjct: 35  DGDLLLATATAEEIGHQEESIRPQRLADYIGQKELKGVLEIGIQAAKARNEAMDHLLLYG 94

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTT++ ++A E+ VN + T+ P + +  D+  LL NL+  D+LFIDEIHRLS + 
Sbjct: 95  PPGLGKTTMSLILATEMEVNCKITAAPALERPRDIVGLLVNLKPGDILFIDEIHRLSRMT 154

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMED++LD+ +G+G SA++  I L +FTL+ ATTRVG LT+PL+DRFG+  RL 
Sbjct: 155 EELLYPAMEDYRLDITIGKGQSAKTRSIPLPQFTLVGATTRVGSLTSPLRDRFGMIQRLR 214

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FYEI++L  IV R A+L   AVT++ A EIA RSRGTPRIA RLLRRVRD+A+V   + I
Sbjct: 215 FYEIDELSLIVTRTAQLLKAAVTEDGAEEIARRSRGTPRIANRLLRRVRDYAQVKGIEQI 274

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
            +++A  A+    +D MG D  D   L ++   F GGPVG+E ++A   E    IE++ E
Sbjct: 275 NQDVAAQAMEIFNVDPMGLDWTDRLVLKVMIEQFNGGPVGLEAVAASTGEDAQTIEEVYE 334

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           PY++Q GF+ RTPRGR+    A +HLG +
Sbjct: 335 PYLLQIGFLHRTPRGRVATSAARKHLGYE 363


>gi|256391549|ref|YP_003113113.1| Holliday junction DNA helicase RuvB [Catenulispora acidiphila DSM
           44928]
 gi|256357775|gb|ACU71272.1| Holliday junction DNA helicase RuvB [Catenulispora acidiphila DSM
           44928]
          Length = 337

 Score =  337 bits (864), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 163/334 (48%), Positives = 224/334 (67%), Gaps = 4/334 (1%)

Query: 3   DREGLLSRNV----SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           + E L+S       ++E A  + LRP+ L EF GQ +    L + + AA+ R  A DH+L
Sbjct: 4   ETERLVSGAAVTGDTEEQAADAALRPKRLAEFVGQPKVRDQLSLVLAAARMREAAPDHIL 63

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKTTL+ ++A EL V  R TSGP I  AGDLAA+L++L D +VLF+DEIHR+S
Sbjct: 64  LSGPPGLGKTTLSMIIANELRVPIRITSGPAIQHAGDLAAILSSLADGEVLFVDEIHRMS 123

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
              EE+LY AMEDF++D++VG+GP A ++ + L  FTL+ ATTR GLL  PL+DRFG   
Sbjct: 124 RPAEEMLYMAMEDFRVDVIVGKGPGATAIPLELPPFTLVGATTRSGLLPAPLRDRFGFTA 183

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
            L FY+  DL+ +V R A+L G+ +  EAA E+A RSRGTPRI  RLLRRVRD+AEV   
Sbjct: 184 HLEFYDAADLEHVVNRSARLLGVRIVAEAAKELAGRSRGTPRIVNRLLRRVRDYAEVKAD 243

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
            T+T EIA AAL    +D+ G D+LD   L  + + FGGGPVG+ T++  + E  + +E+
Sbjct: 244 GTVTLEIARAALDVYEVDERGLDRLDRAVLHALLKLFGGGPVGLSTLAVAVGEESETVEE 303

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           + EP+++++G + RTPRGR+    AW H G+  P
Sbjct: 304 VAEPFLVREGLLARTPRGRIATAAAWAHFGLSAP 337


>gi|15674188|ref|NP_268363.1| Holliday junction DNA helicase B [Lactococcus lactis subsp. lactis
           Il1403]
 gi|12725271|gb|AAK06304.1|AE006449_10 DNA helicase RuvB [Lactococcus lactis subsp. lactis Il1403]
          Length = 324

 Score =  337 bits (864), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 162/317 (51%), Positives = 220/317 (69%), Gaps = 1/317 (0%)

Query: 14  QEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           +ED  I   LRP+   ++ GQ +    L++FI+AAK R E LDHVL  GPPGLGKTT+A 
Sbjct: 2   EEDYGIEKSLRPQFFNQYIGQDKVKEQLEIFIKAAKMREEVLDHVLLFGPPGLGKTTMAF 61

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           V+A ELGVN + T+GP I K GDL A+L  LE  DVLFIDEIHR+ + VEE+LY AMEDF
Sbjct: 62  VIANELGVNIKQTAGPAIEKPGDLVAILNELEPGDVLFIDEIHRMPMQVEEVLYSAMEDF 121

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            +D+M+G G  +RSV ++L  FTL+ ATTR G+L+NPL+ RFGI   + +Y+  DL+ IV
Sbjct: 122 YIDIMLGSGDGSRSVHLDLPPFTLVGATTRAGMLSNPLRARFGISSHMEYYQERDLEEIV 181

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           +R A +  + V D AA EIA+RSRGTPRIA RLL+RVRDFA++     + + I D AL  
Sbjct: 182 KRTADIFEVEVIDNAALEIALRSRGTPRIANRLLKRVRDFAQIMGDGRVDKAITDKALSI 241

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L +D  G D +D + L  +   + GGPVGI T++  ++E R+ +ED+ EPY+IQ+GF+ R
Sbjct: 242 LDVDAAGLDYIDQKILRTMIEMYHGGPVGIGTLAVNIAEDRETVEDMYEPYLIQKGFLMR 301

Query: 313 TPRGRLLMPIAWQHLGI 329
           T +GR +   A++HLG 
Sbjct: 302 TKQGRKVTQRAYEHLGY 318


>gi|313679564|ref|YP_004057303.1| holliday junction DNA helicase subunit ruvb [Oceanithermus
           profundus DSM 14977]
 gi|313152279|gb|ADR36130.1| Holliday junction DNA helicase subunit RuvB [Oceanithermus
           profundus DSM 14977]
          Length = 328

 Score =  337 bits (864), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 169/313 (53%), Positives = 221/313 (70%), Gaps = 1/313 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP  L+++ GQ    + L V+++AA+ R E LDH+L  GPPGLGKTTLA V+A ELGVN
Sbjct: 7   LRPERLDDYVGQERLKAKLAVYLQAARQRGEPLDHLLLFGPPGLGKTTLAHVIAAELGVN 66

Query: 82  FRSTSGPVIAKAGDLAALLTN-LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
            R TSGP I K GDLAA+LTN LE+ DVLFIDEIHRLS   EE LYPAMEDF++D+++G+
Sbjct: 67  IRVTSGPAIEKPGDLAAILTNSLEEGDVLFIDEIHRLSRTAEEHLYPAMEDFKIDIVIGQ 126

Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
           GP+AR+++++L RFTLI ATTR GL++ PL+ RFGI   L FY  E+L   V+R A+L G
Sbjct: 127 GPAARTIRLDLPRFTLIGATTRPGLISGPLRSRFGIVEHLEFYSEEELARGVERDARLMG 186

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGF 260
           +AV  EAA EI  RSRGT R+A RL RRVRD+AEVA  + ++      AL  L +D++G 
Sbjct: 187 IAVEREAALEIGRRSRGTMRVAKRLFRRVRDYAEVAGEEVVSLARTRQALDALGLDELGL 246

Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320
           +  D R L  +   F GGPVG+ET++  + E    +E++ EPY+IQ G IQRTPRGR+  
Sbjct: 247 EARDRRILETMIVKFAGGPVGLETLATAMHEDPATLEEVHEPYLIQLGLIQRTPRGRVAT 306

Query: 321 PIAWQHLGIDIPH 333
             A++HLG   P 
Sbjct: 307 ARAYEHLGHPPPE 319


>gi|294786922|ref|ZP_06752176.1| holliday junction DNA helicase RuvB [Parascardovia denticolens
           F0305]
 gi|315226558|ref|ZP_07868346.1| crossover junction ATP-dependent DNA helicase RuvB [Parascardovia
           denticolens DSM 10105]
 gi|294485755|gb|EFG33389.1| holliday junction DNA helicase RuvB [Parascardovia denticolens
           F0305]
 gi|315120690|gb|EFT83822.1| crossover junction ATP-dependent DNA helicase RuvB [Parascardovia
           denticolens DSM 10105]
          Length = 366

 Score =  337 bits (864), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 158/333 (47%), Positives = 224/333 (67%), Gaps = 1/333 (0%)

Query: 3   DREGLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           +   ++S    +ED      LRP TL+ F GQ +  + L +F++AA+ R    DH+L  G
Sbjct: 25  ESLRVISAQPQEEDRVSDEELRPATLDTFIGQPQLKAQLGLFLQAAQKRGVPPDHILLAG 84

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTL+ +VA+ELGV  R TSGP I  AGDLA++L++L++ +VLFIDEIHRL    
Sbjct: 85  PPGLGKTTLSMIVAKELGVPIRVTSGPAIQHAGDLASILSSLDEGEVLFIDEIHRLPRAA 144

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMEDF++D+MVG+GP A S+ + L RFT I ATTR G+L +PL+ RFG    L+
Sbjct: 145 EELLYIAMEDFRVDVMVGKGPGASSIPLTLPRFTAIGATTREGMLPSPLRARFGFTAHLD 204

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y   +L+ +++R A +  + + D+A  E+A+RSRGTPR+A RLLRRVRD+  V   +TI
Sbjct: 205 YYPKSELERLIKRSALVLNMTIDDQATRELALRSRGTPRVANRLLRRVRDWGIVHGLETI 264

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
             E    AL    IDK G D+LD+  LT + + F GGPVG+  +SA + E  + +E + E
Sbjct: 265 DAEAVIDALELYQIDKEGLDRLDIAVLTALCKQFKGGPVGLNNLSAMVGEEAETVETVCE 324

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           PY++++GF+ RTPRGR     AW+HLG+  P +
Sbjct: 325 PYLVREGFLVRTPRGRAATDRAWKHLGLQPPEQ 357


>gi|154149662|ref|YP_001403280.1| Holliday junction DNA helicase RuvB [Candidatus Methanoregula
           boonei 6A8]
 gi|166231501|sp|A7I4H6|RUVB_METB6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|153998214|gb|ABS54637.1| Holliday junction DNA helicase RuvB [Methanoregula boonei 6A8]
          Length = 335

 Score =  337 bits (864), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 184/331 (55%), Positives = 240/331 (72%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
            E ++S     +DAD   LRP TLE F GQ  A + L++ I AA+ R E +DH+LF GPP
Sbjct: 2   SERVISPEPVPDDADEITLRPSTLEAFVGQEPAKNALRIAIAAARKRGEPIDHILFAGPP 61

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++ARE+G   R+T+GPV+ K GD+AA+ T L++ DVLFIDEIHR++ +VEE
Sbjct: 62  GLGKTTLAHIIAREMGAAIRTTTGPVLEKTGDMAAIATALQNGDVLFIDEIHRMNPVVEE 121

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILYPAMEDF +D+M+GEGPSARS+K+ L RFTLI ATTR GLL++P +DRFG+ IRLN Y
Sbjct: 122 ILYPAMEDFFIDVMIGEGPSARSIKLTLERFTLIGATTRQGLLSSPFRDRFGLLIRLNLY 181

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
             EDL+ IV R A++  + +T + A  IA RSRGTPRIA RLLRRVRD+A V    TIT 
Sbjct: 182 SPEDLEKIVTRSAEILRIPITPKGAAVIASRSRGTPRIANRLLRRVRDYAVVEGDGTITA 241

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           EIA A L  L ID++G D +D R L++IA +FGGGPVG +TI+  + E    IE++ EPY
Sbjct: 242 EIAGAGLALLQIDELGLDDIDRRILSVIAGDFGGGPVGAKTIAISVGEEVRTIEEVYEPY 301

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           +IQ GF++RTP+GR   P A  HL ++   +
Sbjct: 302 LIQIGFVKRTPQGRETTPAALAHLKLNHSQK 332


>gi|116670848|ref|YP_831781.1| Holliday junction DNA helicase RuvB [Arthrobacter sp. FB24]
 gi|171855197|sp|A0JXB1|RUVB_ARTS2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|116610957|gb|ABK03681.1| Holliday junction DNA helicase subunit RuvB [Arthrobacter sp. FB24]
          Length = 362

 Score =  337 bits (864), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 154/333 (46%), Positives = 212/333 (63%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D   +      +E    + LRP+ L +F GQ      L + +EA++ R  + DHVL  
Sbjct: 1   MADSSLVGGGEEPEERVIEAALRPKNLHDFVGQHRVRKQLSLVLEASRMRGRSADHVLLS 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTL+ ++A E+    R +SGP I  AGDLAA+L++L + +VLF+DEIHR+S  
Sbjct: 61  GPPGLGKTTLSMIIAAEMNAPLRISSGPAIQHAGDLAAILSSLSEGEVLFLDEIHRMSRP 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            EE+LY AMEDF++D++VG+G  A ++ + L  FTL+ ATTR GLL  PL+DRFG    L
Sbjct: 121 AEEMLYMAMEDFRVDIVVGKGAGATAIPLELPPFTLVGATTRAGLLPGPLRDRFGFTGHL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY +E+L+ +++R A L  L V      EIA RSRGTPRIA RLLRRVRD+A V   + 
Sbjct: 181 EFYSVEELELVLRRSAGLLDLKVNSAGFSEIAGRSRGTPRIANRLLRRVRDWALVHGIEQ 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I    A AAL    +DK G D+LD   L  +   FGGGPVG+ T++  + E  + +E + 
Sbjct: 241 IDARTASAALDMYEVDKRGLDRLDRSVLEALITKFGGGPVGLSTLAIAVGEEPETVETVA 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY++++G + RTPRGR+ M  AW HLG  +P 
Sbjct: 301 EPYLVREGLLGRTPRGRIAMAPAWTHLGYAVPE 333


>gi|15639155|ref|NP_218601.1| Holliday junction DNA helicase RuvB [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|189025395|ref|YP_001933167.1| Holliday junction DNA helicase RuvB [Treponema pallidum subsp.
           pallidum SS14]
 gi|6174969|sp|P96115|RUVB_TREPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|3322427|gb|AAC65150.1| Holliday junction DNA helicase (ruvB) [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|189017970|gb|ACD70588.1| Holliday junction DNA helicase, subunit B [Treponema pallidum
           subsp. pallidum SS14]
          Length = 350

 Score =  337 bits (863), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 161/326 (49%), Positives = 219/326 (67%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           +       D     LRPR L++F GQ +   NL++FI+AA+ R E+LDH+  +GPPGLGK
Sbjct: 10  VRPEAQPTDDRERALRPRLLKDFLGQEKTKRNLRLFIQAARDRNESLDHLFLIGPPGLGK 69

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127
           TTLA + A ELGV  + T  P + K  DLA +LT L +R V F+DEIHRL   +EE+LY 
Sbjct: 70  TTLAHITACELGVECKVTGAPALDKPKDLAGILTALSERSVFFVDEIHRLKPAIEEMLYI 129

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           AMED++LD ++G+GPSAR+V+I L  FTLI ATTR G++++PL  RFGI  R  FY  E+
Sbjct: 130 AMEDYELDWVIGQGPSARTVRIPLPPFTLIGATTRAGMVSSPLISRFGIVERFEFYTPEE 189

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           L  IVQR A+L  + +   AA  +A  SRGTPR+A RLLRR+RDFA+VA +  I+  I  
Sbjct: 190 LAAIVQRSARLLDITLDARAALALARCSRGTPRVANRLLRRIRDFAQVAGSAHISETIVR 249

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           A L  L ID++G +  D++ L ++  +FGGGPVG ET++  L E  + +ED  EPY+IQ 
Sbjct: 250 AGLAHLKIDELGLELHDIQLLRVMIEHFGGGPVGAETLAISLGESPETLEDYYEPYLIQI 309

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
           G +QRTPRGR+    A+ HLG+ +P 
Sbjct: 310 GLMQRTPRGRMATARAYAHLGLPVPE 335


>gi|326803734|ref|YP_004321552.1| Holliday junction DNA helicase RuvB [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326650029|gb|AEA00212.1| Holliday junction DNA helicase RuvB [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 345

 Score =  336 bits (862), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 172/332 (51%), Positives = 231/332 (69%), Gaps = 2/332 (0%)

Query: 1   MMDREGLLSRNVSQEDAD-ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M + + L S     E+ D  + LRP+ L+++ GQ E    L V+I AA+ R E+LDHVL 
Sbjct: 1   MSNEKRLQSGEEFFEEEDMEASLRPQLLKDYIGQEETKHELSVYIHAARQRTESLDHVLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA V++ E+ VN +++SGP I K GDL  LL  L   DVLFIDEIH L  
Sbjct: 61  YGPPGLGKTTLANVISNEMQVNMQTSSGPAIEKTGDLLILLNELAPGDVLFIDEIHCLPR 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEE+LY AMEDF++D++VG+  SA +V+ +L  FTL+ ATTR G L+ PL+DRFGI   
Sbjct: 121 NVEEMLYSAMEDFRVDIIVGQESSAHAVQFDLPPFTLVGATTRAGSLSAPLRDRFGIIQH 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           + +Y++++L+ IV+R +++  + + DEA+ EIA+RSRGTPRIA RLL+RVRDFA++ +  
Sbjct: 181 MRYYKVDELQEIVKRSSQIFEVTIEDEASYEIALRSRGTPRIANRLLKRVRDFAQIYNTN 240

Query: 240 -TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             I   I + AL  L IDK G D LD R L  I   + GGPVG+ TI+A LSE ++ IED
Sbjct: 241 AIIDLAITERALSILKIDKAGLDDLDRRILETIIFYYQGGPVGLSTIAANLSEEKETIED 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           + EPY+IQ GF+QRTPRGR+    A+QHLGID
Sbjct: 301 MYEPYLIQMGFLQRTPRGRMATAKAYQHLGID 332


>gi|289428307|ref|ZP_06429994.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes J165]
 gi|289158456|gb|EFD06672.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes J165]
          Length = 340

 Score =  336 bits (862), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 156/331 (47%), Positives = 219/331 (66%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M+R  +       E A+ + LRP  L EF GQ      L + + A+K+R    DHVL  G
Sbjct: 1   MERSPVDPSAEPPEKAEEAALRPGALAEFGGQQRVADQLGLVLAASKSRGTTPDHVLLSG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+    R +SGP I  AGDLAA+L++L   +V F+DEIHR+S   
Sbjct: 61  PPGLGKTTLAMIIASEMSAPIRISSGPAIQHAGDLAAILSSLVPGEVFFLDEIHRMSKPA 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMEDF++D++VG+GP A ++ I +  FTL+ ATTR GLL  PL+DRFG   +L+
Sbjct: 121 EEMLYLAMEDFRVDVVVGKGPGATAIPIEIPPFTLVGATTRAGLLPGPLRDRFGFTAQLD 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +YE+ DL+ IV R A + G+ + + AA  IA RSRGTPRIA RLLRRVRD+A+V H   +
Sbjct: 181 YYEVADLERIVTRSAGVIGVELAEGAAHTIASRSRGTPRIANRLLRRVRDWADVHHESPV 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T + A+ AL    +D +G D+LD   L  +   FGGGPVG+ T++  + E    +E++ E
Sbjct: 241 TPQGAETALDLYEVDPLGLDRLDRAVLHAVCLKFGGGPVGLSTLAISVGEEPQTVEEVAE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           P++++ GF+ RTPRGR+    AW+HLG++ P
Sbjct: 301 PFLVRLGFLMRTPRGRVATDRAWRHLGLEPP 331


>gi|288923989|ref|ZP_06418059.1| Holliday junction DNA helicase RuvB [Frankia sp. EUN1f]
 gi|288344667|gb|EFC79126.1| Holliday junction DNA helicase RuvB [Frankia sp. EUN1f]
          Length = 355

 Score =  336 bits (862), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 161/330 (48%), Positives = 226/330 (68%), Gaps = 1/330 (0%)

Query: 3   DREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           D  GL+S   + E+      LRPRTL EF GQ +    L + +E A+ R    DHVL  G
Sbjct: 4   DDGGLVSAAATPEEKAFEAGLRPRTLSEFVGQRKVREQLSIMLEGAQGRGRPPDHVLLSG 63

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKT+LA ++A ELGV  R TSGP I +AGDL A+LT L   +VLF+DEIHR++   
Sbjct: 64  PPGLGKTSLAMIIAEELGVPLRMTSGPAIERAGDLVAILTALTPGEVLFLDEIHRIARPA 123

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMEDF++D+++G+GP A ++ ++L+ FTL+ ATTR GLLT PL+DRFG    ++
Sbjct: 124 EELLYAAMEDFRVDVVLGKGPGATAIPLDLAPFTLVGATTRSGLLTGPLRDRFGFTAHMD 183

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY  ++L  ++ R A+L G+ +TD+ A E+A RSRGTPRIA RLLRRVRD+AEV     +
Sbjct: 184 FYGADELALVLARSARLLGVRLTDDGAAEVAGRSRGTPRIANRLLRRVRDYAEVRADGVV 243

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           +RE+A AAL    +D +G D+LD   L  + R FGGGPVG+ T++  + E  + +ED+ E
Sbjct: 244 SREVAQAALRIYDVDGLGLDRLDRAVLDALVRRFGGGPVGLGTLAVSVGEEAETVEDVSE 303

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           P++++ G + RT RGR+  P A+ HLG++ 
Sbjct: 304 PFLLRAGLLVRTARGRVATPAAFTHLGLEP 333


>gi|269795059|ref|YP_003314514.1| Holliday junction DNA helicase subunit RuvB [Sanguibacter keddieii
           DSM 10542]
 gi|269097244|gb|ACZ21680.1| Holliday junction DNA helicase subunit RuvB [Sanguibacter keddieii
           DSM 10542]
          Length = 355

 Score =  336 bits (861), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 159/329 (48%), Positives = 220/329 (66%), Gaps = 1/329 (0%)

Query: 5   EGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           + L   + S  E A  + LRPR L+EF GQ      L + ++AA  R  + DHVL  GPP
Sbjct: 19  DRLTGSDASDLERAAEAALRPRRLDEFVGQRVVRDQLSLVLDAAIGRGSSPDHVLLSGPP 78

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++A ELG + R TSGP I  AGDLAA+L++L++ +VLFIDEIHRL+   EE
Sbjct: 79  GLGKTTLAMIIAAELGASLRVTSGPAIQHAGDLAAVLSSLDEGEVLFIDEIHRLARPAEE 138

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LY AMEDF++D++VG+G  A ++ + L RFT++ ATTR GLL  PL+DRFG    L+FY
Sbjct: 139 LLYVAMEDFRVDVVVGKGAGASAIPLTLPRFTVVGATTRAGLLPAPLRDRFGFTGHLDFY 198

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
             ++L+ ++ R A L G A+  +AA E+A RSRGTPRIA RLLRRVRD+AEV    ++  
Sbjct: 199 SSDELERVLTRSAGLLGSALQPQAASELASRSRGTPRIANRLLRRVRDWAEVRGDGSMDL 258

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
             A AAL    +D +G D+LD   L  +   F GGPVG+ T++  + E  + +E + EP+
Sbjct: 259 RAARAALEVYEVDDLGLDRLDRAVLRALCTRFAGGPVGLTTLAVTVGEEPETVETVAEPF 318

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++++G + RTPRGR+  P AW HLG+  P
Sbjct: 319 LVREGLMGRTPRGRVATPAAWAHLGLTPP 347


>gi|289641360|ref|ZP_06473525.1| Holliday junction DNA helicase RuvB [Frankia symbiont of Datisca
           glomerata]
 gi|289508822|gb|EFD29756.1| Holliday junction DNA helicase RuvB [Frankia symbiont of Datisca
           glomerata]
          Length = 350

 Score =  336 bits (861), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 163/331 (49%), Positives = 226/331 (68%), Gaps = 1/331 (0%)

Query: 2   MDREGLLSR-NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD EGL+S     QE A  + LRP TL EF GQ +    L + +E A+ARA   DHVL  
Sbjct: 1   MDVEGLVSPVAEPQERAFEAGLRPGTLAEFIGQQKVREQLMIMLEGARARARPPDHVLLS 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKT+LA ++ARE+ V  R TSGP + +AGDL A+LT L   +VLF+DEIHR++  
Sbjct: 61  GPPGLGKTSLAMIIAREMAVPLRMTSGPAVERAGDLVAILTALAPGEVLFLDEIHRIARP 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            EE+LY AMEDF++D+++G+GP A ++ + ++ FTL+ ATTR GLLT PL+DRFG    +
Sbjct: 121 AEELLYAAMEDFRVDVVLGKGPGATAIPLEIAPFTLVGATTRSGLLTGPLRDRFGFTAHM 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           +FY+  +L  ++ R A L G+ +T + A E+A RSRGTPRIA RLLRRVRD+AEV     
Sbjct: 181 DFYDTNELIDVLVRSAALLGVHITGDGAAEVAGRSRGTPRIANRLLRRVRDYAEVRADGV 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +T E+A AAL    +D +G D+LD   L  + R F GGPVG+ T++  + E  D +E++ 
Sbjct: 241 VTHEVAQAALRVYDVDALGLDRLDRAVLEALVRRFNGGPVGLATLAVAVGEEPDTVEEVA 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           EP++++ G + RTPRGR+  P A+ HLG+D 
Sbjct: 301 EPFLVRAGLLARTPRGRIATPAAFTHLGLDP 331


>gi|260654962|ref|ZP_05860450.1| holliday junction DNA helicase RuvB [Jonquetella anthropi E3_33 E1]
 gi|260630277|gb|EEX48471.1| holliday junction DNA helicase RuvB [Jonquetella anthropi E3_33 E1]
          Length = 347

 Score =  336 bits (861), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 163/312 (52%), Positives = 218/312 (69%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP TL EF GQ E    L ++++AA+ R E LDH LF GPPGLGKTTL+ ++A E+G +
Sbjct: 23  LRPLTLAEFNGQSEIKEKLSIYMQAARLRGEPLDHTLFYGPPGLGKTTLSGIIAHEMGGS 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R T+GP + K GDLAA+LT+L+D DVLFIDEIHR+SI  EE+LY AMEDF + L+VG+G
Sbjct: 83  LRVTTGPALEKPGDLAAILTSLQDGDVLFIDEIHRMSISTEEVLYSAMEDFSIHLIVGKG 142

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P AR+V + + +FTL+ ATTR+GLL++PL+ RFGI  +L  Y+  +L  I+QRGA L  +
Sbjct: 143 PLARNVTVPMPKFTLVGATTRLGLLSSPLRARFGIVEQLRLYDELELCQILQRGAGLLNV 202

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
           + + E    IA RSRGTPR+A RLLRRVRD A+V     I   +   A+  L +D  GF+
Sbjct: 203 SASSEGLRAIARRSRGTPRVALRLLRRVRDVADVTGQAQIDEALVSQAMDMLGLDDRGFN 262

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             D R +T +   F GGPVG+ TI+A L+E    IED+ EPY+IQQG I+RTPRGR    
Sbjct: 263 AGDRRIITTVVELFSGGPVGLSTIAAALNEEPQTIEDIYEPYLIQQGMIERTPRGRKATE 322

Query: 322 IAWQHLGIDIPH 333
            A+++LG+ +P 
Sbjct: 323 KAYEYLGLPVPQ 334


>gi|291059577|gb|ADD72312.1| Holliday junction DNA helicase RuvB [Treponema pallidum subsp.
           pallidum str. Chicago]
          Length = 354

 Score =  336 bits (861), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 165/336 (49%), Positives = 223/336 (66%), Gaps = 3/336 (0%)

Query: 1   MMDREGLLSR---NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           +MD    LS         D     LRPR L++F GQ +   NL++FI+AA+ R E+LDH+
Sbjct: 4   LMDHTASLSPVRPEAQPTDDRERALRPRLLKDFLGQEKTKRNLRLFIQAARDRNESLDHL 63

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
             +GPPGLGKTTLA + A ELGV  + T  P + K  DLA +LT L +R V F+DEIHRL
Sbjct: 64  FLIGPPGLGKTTLAHITACELGVECKVTGAPALDKPKDLAGILTALSERSVFFVDEIHRL 123

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
              +EE+LY AMED++LD ++G+GPSAR+V+I L  FTLI ATTR G++++PL  RFGI 
Sbjct: 124 KPAIEEMLYIAMEDYELDWVIGQGPSARTVRIPLPPFTLIGATTRAGMVSSPLISRFGIV 183

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            R  FY  E+L  IVQR A+L  + +   AA  +A  SRGTPR+A RLLRR+RDFA+VA 
Sbjct: 184 ERFEFYTPEELAAIVQRSARLLDITLDARAALALARCSRGTPRVANRLLRRIRDFAQVAG 243

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
           +  I+  I  A L  L ID++G +  D++ L ++  +FGGGPVG ET++  L E  + +E
Sbjct: 244 SAHISETIVRAGLAHLKIDELGLELHDIQLLRVMIEHFGGGPVGAETLAISLGESPETLE 303

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           D  EPY+IQ G +QRTPRGR+    A+ HLG+ +P 
Sbjct: 304 DYYEPYLIQIGLMQRTPRGRMATARAYAHLGLPVPE 339


>gi|255327193|ref|ZP_05368268.1| holliday junction DNA helicase RuvB [Rothia mucilaginosa ATCC
           25296]
 gi|255295811|gb|EET75153.1| holliday junction DNA helicase RuvB [Rothia mucilaginosa ATCC
           25296]
          Length = 367

 Score =  336 bits (861), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 153/315 (48%), Positives = 211/315 (66%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
            + LRP++L++F GQ      L + +EA+K R  + DHVL  GPPGLGKTTLA ++A E+
Sbjct: 50  EAALRPKSLDDFVGQRRVRQQLSLVLEASKMRGRSADHVLLSGPPGLGKTTLAMIIAAEM 109

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138
               R TSGP I  +GDLAA+L++L   +VLF+DEIHR+S   EE+LY AMEDF++D++V
Sbjct: 110 EAPLRITSGPAIQHSGDLAAILSSLTPGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDIVV 169

Query: 139 GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKL 198
           G+G  A S+ + L +FTL+ ATTR GLL  PL+DRFG    L FY +E+L+ +++R A L
Sbjct: 170 GKGAGATSIPLELPQFTLVGATTRAGLLPGPLRDRFGFTGHLEFYSVEELELVLRRSAGL 229

Query: 199 TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKM 258
             + +T E   EIA RSRGTPRIA RLLRRVRD+A V     I    A  AL    +D  
Sbjct: 230 MDMQITSEGFTEIAGRSRGTPRIANRLLRRVRDWALVNGVDRINATDAATALDMYEVDSR 289

Query: 259 GFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRL 318
           G D+LD   L  +   FGGGPVG+ T++  + E  + +E + EPY++++G I RTPRGR+
Sbjct: 290 GLDRLDRAVLEALIHKFGGGPVGLSTLAIAVGEETETVETVAEPYLVREGLIGRTPRGRV 349

Query: 319 LMPIAWQHLGIDIPH 333
            +P AW+HLG++ P 
Sbjct: 350 ALPAAWEHLGLEAPE 364


>gi|319956008|ref|YP_004167271.1| holliday junction DNA helicase ruvb [Nitratifractor salsuginis DSM
           16511]
 gi|319418412|gb|ADV45522.1| Holliday junction DNA helicase RuvB [Nitratifractor salsuginis DSM
           16511]
          Length = 337

 Score =  336 bits (861), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 167/329 (50%), Positives = 240/329 (72%), Gaps = 2/329 (0%)

Query: 5   EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E ++     + +++    LRP + +E+ GQ +   NL+VFI+A+  RAEALDH+LF GPP
Sbjct: 2   ERIVEFERFEGESNYERTLRPSSWDEYVGQEKIKKNLQVFIQASLKRAEALDHILFFGPP 61

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++A E+G N ++T+ P+I K+GDLAALLTN+E+ D+LFIDEIHR+S  +EE
Sbjct: 62  GLGKTTLANIIASEMGANIKTTAAPMIEKSGDLAALLTNIEEGDILFIDEIHRMSPAIEE 121

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILYPAMED++LD+++G GP+A++VKI+L RFTL+ ATTR G+L+NPL++RFG+  R+ FY
Sbjct: 122 ILYPAMEDYRLDIIIGSGPAAQAVKIDLPRFTLVGATTRAGMLSNPLRERFGMHFRMEFY 181

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
             E+L  I+++ A   G+ +  +AA EIA RSRGTPRIA RLLRRVRDFAEVA    I+ 
Sbjct: 182 TPEELAKIIEQAADKLGIGIDKDAALEIARRSRGTPRIALRLLRRVRDFAEVAEEACISL 241

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           E A   L +L ++ +GFD+ DL+ L ++     G P+G+ TI+A LSE    IE+++EPY
Sbjct: 242 ETARYGLDQLGVNHIGFDEQDLKLLELLISA-RGRPMGLSTIAAALSEDEGTIEEVLEPY 300

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           +I  G+I+RT RGR+  P +++   +  P
Sbjct: 301 LIANGYIERTARGRIATPKSYELFRLTPP 329


>gi|157363791|ref|YP_001470558.1| Holliday junction DNA helicase RuvB [Thermotoga lettingae TMO]
 gi|172045991|sp|A8F5R0|RUVB_THELT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|157314395|gb|ABV33494.1| Holliday junction DNA helicase RuvB [Thermotoga lettingae TMO]
          Length = 343

 Score =  335 bits (860), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 154/321 (47%), Positives = 228/321 (71%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           +   + DA +  LRP TLE++ GQ E    L + ++AAK R E LDH+LF GPPGLGKTT
Sbjct: 5   QQNREGDAILVSLRPDTLEDYIGQEEVKKKLYIAMKAAKLRNEPLDHILFSGPPGLGKTT 64

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           LA V+A+E+G N   TSGPV+ + GD+AA+L+++E+ D+LFIDEIHR++  VEE+ Y A+
Sbjct: 65  LAFVIAKEMGKNIHITSGPVLERQGDIAAILSSIEEGDILFIDEIHRINKAVEEVFYSAL 124

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           ED+++D+M+G+GP+ARS++I L  FTL+ ATTR GLL++PL++RFG+ + L FY +++L 
Sbjct: 125 EDYKVDIMIGKGPTARSIRIGLKPFTLVGATTRSGLLSSPLRNRFGMILELQFYTVKELM 184

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            I++R  K+  + + + AA  IA R+RGTPRIA RLL+RVRD A +     I   + +  
Sbjct: 185 EIIKRACKIMNIEIEESAAQLIASRARGTPRIALRLLKRVRDVATIRKENKIISHLVEKT 244

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           +  L IDK+G D++D + L  +   + GGPVGIE ++A L+   D ++++ EPY++QQG 
Sbjct: 245 MDILEIDKLGLDEMDRKILRTLIEIYDGGPVGIEALAATLNLEIDTLKEIHEPYLLQQGL 304

Query: 310 IQRTPRGRLLMPIAWQHLGID 330
           I RTPRGR+   IA++HLG  
Sbjct: 305 IIRTPRGRVATGIAYEHLGYP 325


>gi|302550159|ref|ZP_07302501.1| Holliday junction DNA helicase RuvB [Streptomyces viridochromogenes
           DSM 40736]
 gi|302467777|gb|EFL30870.1| Holliday junction DNA helicase RuvB [Streptomyces viridochromogenes
           DSM 40736]
          Length = 356

 Score =  335 bits (860), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 158/330 (47%), Positives = 221/330 (66%), Gaps = 1/330 (0%)

Query: 5   EGLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E L+      ED A  + LRP+ L+EF GQ +    L + + AA+AR    DHVL  G P
Sbjct: 13  ERLVDSVADGEDQAVEAALRPKDLDEFIGQEKVREQLDLVLRAARARGATADHVLLSGAP 72

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTL+ ++A E+G   R TSGP I  AGDLAA+L++L++ +VLF+DEIHR+S   EE
Sbjct: 73  GLGKTTLSMIIAAEMGAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEE 132

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LY AMEDF++D++VG+GP A ++ + L  FTL+ ATTR GLL  PL+DRFG    + FY
Sbjct: 133 MLYMAMEDFRVDVIVGKGPGATAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTAHMEFY 192

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           E  +L+ ++ R A L  + +    A EIA RSRGTPRIA RLLRRVRD+A+V     IT+
Sbjct: 193 EPAELERVIHRSANLLEVEIEPHGAAEIAGRSRGTPRIANRLLRRVRDYAQVKADGLITQ 252

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           +IA AAL    +D+ G D+LD   L  + + F GGPVG+ T++  + E R+ +E++ EP+
Sbjct: 253 DIAAAALAVYEVDERGLDRLDRAVLEALLKLFSGGPVGLSTLAVAVGEERETVEEVAEPF 312

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           ++++G + RTPRGR+  P AW HLG+  P 
Sbjct: 313 LVREGLLARTPRGRVATPAAWAHLGLTPPR 342


>gi|307326762|ref|ZP_07605954.1| Holliday junction DNA helicase RuvB [Streptomyces violaceusniger Tu
           4113]
 gi|306887525|gb|EFN18519.1| Holliday junction DNA helicase RuvB [Streptomyces violaceusniger Tu
           4113]
          Length = 362

 Score =  335 bits (860), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 156/330 (47%), Positives = 220/330 (66%), Gaps = 1/330 (0%)

Query: 6   GLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
            L+  +   +D A  + LRP+ L EF GQ      L + ++AA+ R    DHVL  G PG
Sbjct: 21  RLVGADADGDDQAVEAALRPKDLGEFVGQERVREQLDLVLKAARQRGGTADHVLLSGAPG 80

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTL+ ++A E+    R TSGP I  AGDLAA+L++L + +VLF+DEIHR+S   EE+
Sbjct: 81  LGKTTLSMIIAAEMAAPIRITSGPAIQHAGDLAAILSSLAEGEVLFLDEIHRMSRPAEEM 140

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LY AMEDF++D++VG+GP A ++ + L  FTL+ ATTR GLL  PL+DRFG    + FY 
Sbjct: 141 LYMAMEDFRVDVIVGKGPGATAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTGHMEFYA 200

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
             +L+ ++ R A L  + +  E A EIA RSRGTPRIA RLLRRVRD+A+V     ITRE
Sbjct: 201 PAELERVIHRSAGLLDVTIEAEGASEIAGRSRGTPRIANRLLRRVRDYAQVKADGVITRE 260

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           IA +AL    +D+ G D+LD   L+ + + FGGGPVG+ T++  + E R+ +E++ EP++
Sbjct: 261 IAASALAVYDVDERGLDRLDRAVLSALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPFL 320

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           +++G + RTPRGR+  P AW HLG+  P +
Sbjct: 321 VREGLLARTPRGRIGTPAAWAHLGLTPPPQ 350


>gi|330836554|ref|YP_004411195.1| Holliday junction DNA helicase subunit RuvB [Spirochaeta coccoides
           DSM 17374]
 gi|329748457|gb|AEC01813.1| Holliday junction DNA helicase subunit RuvB [Spirochaeta coccoides
           DSM 17374]
          Length = 356

 Score =  335 bits (860), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 153/329 (46%), Positives = 217/329 (65%), Gaps = 1/329 (0%)

Query: 3   DREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           ++  +LS     Q D   +LLRP+ L++F GQ +   NL VFI AA+ R EALDHV  +G
Sbjct: 15  EQNSVLSMTFQRQGDETENLLRPQRLKDFQGQQKLKDNLSVFITAARERNEALDHVFLIG 74

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+    R TS P + K  DLA +LTN+ +  V FIDEIHRL   +
Sbjct: 75  PPGLGKTTLATIIANEMNAEIRMTSAPALDKPKDLAGILTNISENSVFFIDEIHRLKPAL 134

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMED+++D ++G+GP+AR+++I L RFTLI ATT+ G +++PL  RFGI   ++
Sbjct: 135 EEMLYIAMEDYEIDWVIGQGPAARTMRIPLPRFTLIGATTKAGQVSSPLHSRFGITCHID 194

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY   +L  I+ R + + G  +T +A   +A  SRGTPRIA RLLRR+RDFA+V     +
Sbjct: 195 FYNENELSGIILRSSGIVGTEITPDAVSLLARCSRGTPRIANRLLRRLRDFADVIGTGIV 254

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
             +I    + RL ID  G D+ D   L  I   + GGPVG +T+S  + E  +++ED  E
Sbjct: 255 DVDIVHEGMKRLGIDLNGLDEQDRNILRTIIEFYDGGPVGADTLSISVGEASESLEDFYE 314

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           PY+IQ+G+++RTPRGR++   A++ LGI 
Sbjct: 315 PYLIQKGYLKRTPRGRMVTRKAYELLGIP 343


>gi|84496344|ref|ZP_00995198.1| Holliday junction DNA helicase RuvB [Janibacter sp. HTCC2649]
 gi|84383112|gb|EAP98993.1| Holliday junction DNA helicase RuvB [Janibacter sp. HTCC2649]
          Length = 392

 Score =  335 bits (860), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 158/324 (48%), Positives = 214/324 (66%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
            +   E    + LRP+ L EF GQ      L + +EAA+ R    DH+L  GPPGLGKTT
Sbjct: 50  ADSDDERVVEAALRPKRLSEFPGQTRVRDQLGLVLEAARRRGSVPDHILLSGPPGLGKTT 109

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           LA +VA EL    R TSGP I  AGDLAA+L++L++ +VLF+DEIHR+S   EE+LY AM
Sbjct: 110 LALIVAAELERPIRITSGPAIQHAGDLAAVLSSLDEGEVLFLDEIHRMSRAAEEMLYLAM 169

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           EDF++D++VG+GP A ++ + LS FT++ ATTR GLL  PL+DRFG    L++Y+  DL 
Sbjct: 170 EDFRVDVIVGKGPGATAIPLELSPFTVVGATTRSGLLPAPLRDRFGFTGHLDYYDASDLT 229

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
           TI++R A L G+   +    EIA RSRGTPRIA RLLRRVRD+A+V  +  +  + A AA
Sbjct: 230 TILRRSAGLLGVDANEAGITEIAGRSRGTPRIANRLLRRVRDWAQVHGSGHVDLDAAHAA 289

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           L    +D  G D+LD   L  + R FGGGPVG+ T++  + E  D +E + EPY++++GF
Sbjct: 290 LRLFDVDDAGLDRLDRAVLDALCRRFGGGPVGLSTLAIAVGEESDTVETVAEPYLVREGF 349

Query: 310 IQRTPRGRLLMPIAWQHLGIDIPH 333
           + RTPRGR     AW+HLG+  P 
Sbjct: 350 MVRTPRGRAASGKAWRHLGLTPPR 373


>gi|240173174|ref|ZP_04751832.1| Holliday junction DNA helicase RuvB [Mycobacterium kansasii ATCC
           12478]
          Length = 347

 Score =  335 bits (860), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 164/329 (49%), Positives = 229/329 (69%), Gaps = 1/329 (0%)

Query: 5   EGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           +  +S  ++  + DI   LRPR+L EF GQ      L++ IE A+ R    DH+L  GPP
Sbjct: 6   DRDVSPALAVGEGDIDGSLRPRSLREFIGQPRVREQLQLVIEGARNRGGTPDHILLSGPP 65

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKT+LA ++A ELG + R TSGP + +AGDLAA+L+NL D DVLFIDEIHR++   EE
Sbjct: 66  GLGKTSLAMIIAGELGSSLRVTSGPALERAGDLAAMLSNLVDHDVLFIDEIHRIARPAEE 125

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LY AMEDF++D++VG+GP A S+ + ++ FTL+ ATTR G LT PL+DRFG    ++FY
Sbjct: 126 MLYLAMEDFRVDVVVGKGPGATSIPLEIAPFTLVGATTRSGALTGPLRDRFGFTAHMDFY 185

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           E  +L+ ++ R A + G+ +  EAA EIA RSRGTPRIA RLLRRVRDFAEV     ITR
Sbjct: 186 EPAELERVLARSAGILGIQLGAEAAAEIARRSRGTPRIANRLLRRVRDFAEVRADGVITR 245

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           ++A AAL    +D++G D+LD   L+ + R+FGGGPVG+ T++  + E    +E++ EP+
Sbjct: 246 DVAKAALEVYDVDELGLDRLDRAVLSALTRSFGGGPVGVSTLAVAVGEEAATVEEVCEPF 305

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           +++ G + RTPRGR+   +AW HLG+  P
Sbjct: 306 LVRAGMVARTPRGRVATALAWTHLGMSPP 334


>gi|296273983|ref|YP_003656614.1| Holliday junction DNA helicase RuvB [Arcobacter nitrofigilis DSM
           7299]
 gi|296098157|gb|ADG94107.1| Holliday junction DNA helicase RuvB [Arcobacter nitrofigilis DSM
           7299]
          Length = 338

 Score =  335 bits (860), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 163/332 (49%), Positives = 232/332 (69%), Gaps = 1/332 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M DR   + +   +++     LRP + +++ GQ +   NL+VFI+A++ R EALDH+LF 
Sbjct: 1   MDDRLVNVEQISFEDEKSEISLRPSSWDDYIGQEKIKKNLRVFIDASRKRGEALDHILFY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTL+ +++ E+  N + T+GP+I K+GDLAA+LTNLE+ D+LFIDEIHRLS  
Sbjct: 61  GPPGLGKTTLSYLISNEMNSNIKITAGPMIEKSGDLAAILTNLEEGDILFIDEIHRLSPA 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILYPAMED++LD+++G GP+A++VKI+L RFTLI ATTR G+L+NPL++RFG+  R+
Sbjct: 121 VEEILYPAMEDYRLDIIIGSGPAAQTVKIDLPRFTLIGATTRAGMLSNPLRERFGMHFRM 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY   +L  I+Q            +A+ EIA RSRGTPRIA RLLRRVRDFAEV + + 
Sbjct: 181 QFYTHPELSKIIQIAGTKLDKECEKDASLEIARRSRGTPRIALRLLRRVRDFAEVENEQI 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I  +  + AL  L +++ GFD++D+  L ++  N  G P+G+ TI+A LSE    IED I
Sbjct: 241 IKLKRCEYALNELGVNETGFDEMDINLLELLVSN-RGRPMGLSTIAAALSEDEGTIEDAI 299

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EPY++  G+I+RT RGR+     ++   +  P
Sbjct: 300 EPYLLANGYIERTARGRVASVKTYELFRLTAP 331


>gi|269956460|ref|YP_003326249.1| Holliday junction DNA helicase RuvB [Xylanimonas cellulosilytica
           DSM 15894]
 gi|269305141|gb|ACZ30691.1| Holliday junction DNA helicase RuvB [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 367

 Score =  335 bits (860), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 164/330 (49%), Positives = 222/330 (67%), Gaps = 1/330 (0%)

Query: 4   REGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
            E L++      E A  + LRP+ L+EF GQ      L + ++AA AR  A DHVL  GP
Sbjct: 13  SERLVAGGADDVERAAEAALRPKRLDEFVGQRVVRDQLSLVLQAALARGAAPDHVLLSGP 72

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++A EL  + R TSGP I  AGDLAA+L++LE+ +VLFIDEIHRL+   E
Sbjct: 73  PGLGKTTLAMIIASELNTSLRVTSGPAIQHAGDLAAVLSSLEEGEVLFIDEIHRLARPAE 132

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LY AMEDF++D++VG+G  A ++ + L  FT++ ATTR GLL  PL+DRFG    L+F
Sbjct: 133 ELLYVAMEDFRVDVIVGKGAGASAIPLALPPFTVVGATTRSGLLPAPLRDRFGFTGHLDF 192

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y+  DL+ ++ R A L G+ +   AA EIA RSRGTPRIA RLLRRVRD+A+V     + 
Sbjct: 193 YDAADLERVIVRSAGLLGVELHHAAAHEIAGRSRGTPRIANRLLRRVRDWAQVRGDGRLD 252

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
              A AAL    +D +G D+LD   L  + R FGGGPVG+ T++  + E  D +E + EP
Sbjct: 253 LAAAHAALDVYEVDPIGLDRLDRSVLDALCRRFGGGPVGLSTLAMTVGEEPDTVETVAEP 312

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           Y++++GF+ RTPRGR+  P+AW+HLG+  P
Sbjct: 313 YLVREGFVARTPRGRVATPLAWEHLGLVAP 342


>gi|320333569|ref|YP_004170280.1| Holliday junction ATP-dependent DNA helicase ruvB [Deinococcus
           maricopensis DSM 21211]
 gi|319754858|gb|ADV66615.1| Holliday junction ATP-dependent DNA helicase ruvB [Deinococcus
           maricopensis DSM 21211]
          Length = 334

 Score =  335 bits (859), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 169/317 (53%), Positives = 225/317 (70%), Gaps = 1/317 (0%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +A     RP+ LE++ GQ      L V+++AAKAR EALDH L  GPPGLGKTTL+ ++A
Sbjct: 6   EAPDLANRPKRLEDYVGQARLKEKLSVYLQAAKARREALDHTLLFGPPGLGKTTLSHIIA 65

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTN-LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
            ELGVN + TSGP I K GDLAA+LTN LE+ DVLFIDEIHRL  + EE LYPAMEDF+L
Sbjct: 66  YELGVNIKVTSGPAIEKPGDLAAILTNSLEEGDVLFIDEIHRLGRVAEEHLYPAMEDFKL 125

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D+++G+GP+AR++++ L RFTL+ ATTR GL+T P++ RFGI   L +Y  E++   + R
Sbjct: 126 DIVLGQGPAARTIELPLPRFTLVGATTRPGLITAPMRSRFGIIEHLEYYTPEEIALGLMR 185

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A    L +  +AA E+  RSRGT RIA RLLRRVRD+AEVA  + IT+E A+ AL +L 
Sbjct: 186 DATTLDLGLELDAAMEVGARSRGTMRIAKRLLRRVRDYAEVAGERRITKERAEDALDKLG 245

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D  G D  D +YL  +   F GGPVG++T++  +SE    +ED+ EPY+IQ GFI+RTP
Sbjct: 246 LDTAGLDDRDKKYLETLIHRFDGGPVGVDTLATAISEDALTLEDVYEPYLIQLGFIKRTP 305

Query: 315 RGRLLMPIAWQHLGIDI 331
           RGR+    A+ HLG+D+
Sbjct: 306 RGRVATAAAYDHLGLDV 322


>gi|220912785|ref|YP_002488094.1| Holliday junction DNA helicase RuvB [Arthrobacter chlorophenolicus
           A6]
 gi|254767407|sp|B8H9D6|RUVB_ARTCA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|219859663|gb|ACL40005.1| Holliday junction DNA helicase RuvB [Arthrobacter chlorophenolicus
           A6]
          Length = 361

 Score =  335 bits (859), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 155/332 (46%), Positives = 214/332 (64%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M +   + +    +E A  + LRP+ L++F GQ      L + ++A++ R  + DHVLF 
Sbjct: 1   MAEPSLVAAGEEPEERAIEAALRPKNLDDFVGQHRVRKQLSLVLKASRMRGRSADHVLFS 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA +VA E+    R +SGP I  AGDLAA+L++L + +VLF+DEIHR+S  
Sbjct: 61  GPPGLGKTTLAMIVAAEMNAPLRISSGPAIQHAGDLAAILSSLSEGEVLFLDEIHRMSRP 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            EE+LY AMEDF++D++VG+G  A ++ + L  FTL+ ATTR GLL  PL+DRFG    L
Sbjct: 121 AEEMLYMAMEDFRVDIVVGKGAGATAIPLELPPFTLVGATTRAGLLPGPLRDRFGFTGHL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY + +L+ +++R A L  L V      EIA RSRGTPRIA RLLRRVRD+A V     
Sbjct: 181 EFYSVPELELVLRRSAGLLDLKVNSAGFSEIAGRSRGTPRIANRLLRRVRDWALVHGVDQ 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I    A AAL    +DK G D+LD   L  +   FGGGPVG+ T++  + E  + +E + 
Sbjct: 241 IDARSASAALDMYEVDKKGLDRLDRSVLEALITKFGGGPVGLSTLAIAVGEETETVETVA 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EP+++++G + RTPRGR+ M  AW HLG  IP
Sbjct: 301 EPFLVREGLLGRTPRGRIAMAPAWTHLGYAIP 332


>gi|328907431|gb|EGG27197.1| Holliday junction DNA helicase RuvB [Propionibacterium sp. P08]
          Length = 340

 Score =  335 bits (859), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 155/331 (46%), Positives = 217/331 (65%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M+   +       E A+ + LRP  L EF GQ      L + + A+K+R  A DHVL  G
Sbjct: 1   MEHSPVDPSAEPPEKAEEAALRPGALAEFGGQQRVADQLGLVLAASKSRGTAPDHVLLSG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+    R +SGP I  AGDLAA+L++L   +V F+DEIHR+S   
Sbjct: 61  PPGLGKTTLAMIIASEMSAPIRISSGPAIQHAGDLAAILSSLVPGEVFFLDEIHRMSKPA 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMEDF++D++VG+GP A ++ I++  FTL+ ATTR GLL  PL+DRFG   +L+
Sbjct: 121 EEMLYLAMEDFRVDVVVGKGPGATAIPIDIPPFTLVGATTRAGLLPGPLRDRFGFTAQLD 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +YE+ DL+ IV R A + G+ + D  A  IA RSRGTPRIA RLLRRVRD+A+V     +
Sbjct: 181 YYEVADLERIVTRSAGVIGVELADGTAHTIASRSRGTPRIANRLLRRVRDWADVNRESPV 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T   A  AL    +D +G D+LD   L+ +   FGGGPVG+ T++  + E    +E++ E
Sbjct: 241 TPHGAQTALDLYEVDPLGLDRLDRAVLSAVCLKFGGGPVGLSTLAISVGEEPQTVEEVAE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           P++++ GF+ RTPRGR+    AW+HLG++ P
Sbjct: 301 PFLVRLGFLMRTPRGRVATDRAWRHLGLEPP 331


>gi|297198357|ref|ZP_06915754.1| Holliday junction DNA helicase RuvB [Streptomyces sviceus ATCC
           29083]
 gi|197714414|gb|EDY58448.1| Holliday junction DNA helicase RuvB [Streptomyces sviceus ATCC
           29083]
          Length = 356

 Score =  335 bits (859), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 161/330 (48%), Positives = 224/330 (67%), Gaps = 1/330 (0%)

Query: 5   EGLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E L+  +  +ED A  + LRP+ L+EF GQ +    L + + AA+AR    DHVL  G P
Sbjct: 13  ERLVGASADREDQAVEAALRPKDLDEFIGQEKVREQLDLVLRAARARGATADHVLLSGAP 72

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTL+ ++A E+G   R TSGP I  AGDLAA+L++L++ +VLF+DEIHR+S   EE
Sbjct: 73  GLGKTTLSMIIAAEMGAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEE 132

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LY AMEDF++D++VG+GP A ++ + L  FTL+ ATTR GLL  PL+DRFG    + FY
Sbjct: 133 MLYMAMEDFRVDVIVGKGPGATAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTAHMEFY 192

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           E  +L+ ++ R A L  + +  E A EIA RSRGTPRIA RLLRRVRD+A+V     ITR
Sbjct: 193 EPAELERVIHRSAHLLDVEIGSEGAAEIAGRSRGTPRIANRLLRRVRDYAQVKADGIITR 252

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           +IA AAL    +D  G D+LD   L  + + FGGGPVG+ T++  + E R+ +E++ EP+
Sbjct: 253 DIAAAALKVYEVDARGLDRLDRGVLEALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPF 312

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           ++++G + RTPRGR+  P AW HLG+  P 
Sbjct: 313 LVREGLLARTPRGRVATPAAWAHLGLTPPR 342


>gi|257453133|ref|ZP_05618432.1| Holliday junction DNA helicase RuvB [Fusobacterium sp. 3_1_5R]
 gi|257467391|ref|ZP_05631702.1| Holliday junction DNA helicase RuvB [Fusobacterium gonidiaformans
           ATCC 25563]
 gi|315918521|ref|ZP_07914761.1| holliday junction DNA helicase ruvB [Fusobacterium gonidiaformans
           ATCC 25563]
 gi|317059668|ref|ZP_07924153.1| holliday junction DNA helicase ruvB [Fusobacterium sp. 3_1_5R]
 gi|313685344|gb|EFS22179.1| holliday junction DNA helicase ruvB [Fusobacterium sp. 3_1_5R]
 gi|313692396|gb|EFS29231.1| holliday junction DNA helicase ruvB [Fusobacterium gonidiaformans
           ATCC 25563]
          Length = 334

 Score =  335 bits (859), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 172/327 (52%), Positives = 228/327 (69%), Gaps = 4/327 (1%)

Query: 5   EGLLSR-NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           + ++S   +  E      LRP++  E+ GQ      + + I+AAK R   +DHVL  GPP
Sbjct: 2   DRIVSELEIPGEIEIQKNLRPKSFREYIGQESLKEKIFISIQAAKRRGSVIDHVLLYGPP 61

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA V+A E+G N + TSGPV+ KAGDLAA+LT+LE+ DVLFIDEIHRL+  VEE
Sbjct: 62  GLGKTTLAGVIANEMGANLKITSGPVLEKAGDLAAILTSLEENDVLFIDEIHRLNTAVEE 121

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILYPAMED +LD+++G+GP+ARS++I L  FTLI ATTR GLL+ PL+DRFGI  ++ +Y
Sbjct: 122 ILYPAMEDKELDIIIGKGPAARSIRIELPNFTLIGATTRAGLLSAPLRDRFGISHKMEYY 181

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
             E++K I+ RG K+  + V  E A E+A RSRGTPRIA RLL+RVRD+AE+     IT+
Sbjct: 182 TEEEVKEIILRGGKILEIEVEGEGAEELAKRSRGTPRIANRLLKRVRDYAEIRGKGIITQ 241

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           EIA  AL  L +D  G D LD   L  +  N+GGGPVGIET+S  L E R  +E++ EPY
Sbjct: 242 EIAIQALNLLGVDMEGLDDLDRNILQAMFENYGGGPVGIETLSLLLGEDRRTLEEVYEPY 301

Query: 304 MIQQGFIQRTPRGRLLMPIA---WQHL 327
           +IQ+GF++RT RGR+    A   W+ +
Sbjct: 302 LIQKGFLKRTNRGRIATSKAIAYWEKM 328


>gi|126660419|ref|ZP_01731529.1| Holliday junction DNA helicase B [Cyanothece sp. CCY0110]
 gi|126618285|gb|EAZ89044.1| Holliday junction DNA helicase B [Cyanothece sp. CCY0110]
          Length = 367

 Score =  335 bits (859), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 156/326 (47%), Positives = 222/326 (68%), Gaps = 1/326 (0%)

Query: 3   DREGLLSR-NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           ++E LL   N   ++++   +RP  LE++ GQ    S L + I+AA  R + LDH+L  G
Sbjct: 39  NQERLLDPTNKDSDESNGQNIRPHRLEDYIGQESLKSVLNIGIKAALGRQDPLDHLLLYG 98

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTT++ ++A E+GVN + T+ P + +  D+  +L NL+  DVLFIDEIHRL+ + 
Sbjct: 99  PPGLGKTTMSLILAEEMGVNCKITAAPALERPRDITGILVNLKPGDVLFIDEIHRLNRLT 158

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMED++LD+ +G+G +AR+  I L RFTL+ ATT+VG LT+PL+DRFG+  RL 
Sbjct: 159 EELLYPAMEDYRLDITIGKGQAARTRSIPLPRFTLVGATTKVGSLTSPLRDRFGLIERLR 218

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FYE E+L  I++R AK+  +++T   A EIA RSRGTPRIA RLLRRVRD+  V   ++I
Sbjct: 219 FYEPEELALIIERTAKILEVSITQPGAMEIARRSRGTPRIANRLLRRVRDYQVVHKHQSI 278

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T  +A  +L    +D MG D  D   L  +  NF GGPVG+E+++A   E    IED+ E
Sbjct: 279 TEGLAAESLDFYQVDPMGLDWTDRMILETMINNFNGGPVGLESVAASTGEDAKTIEDVYE 338

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHL 327
           PY++Q GF+ RT RGR++  +A +HL
Sbjct: 339 PYLLQIGFLNRTHRGRMVTELAREHL 364


>gi|30022495|ref|NP_834126.1| Holliday junction DNA helicase B [Bacillus cereus ATCC 14579]
 gi|29898053|gb|AAP11327.1| Holliday junction DNA helicase ruvB [Bacillus cereus ATCC 14579]
          Length = 286

 Score =  335 bits (859), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 161/284 (56%), Positives = 212/284 (74%)

Query: 50  RAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVL 109
           R E LDHVL  GPPGLGKTTLA ++A E+GVN ++TSGP I + GDLAA+LT L+  DVL
Sbjct: 2   REETLDHVLLYGPPGLGKTTLANIIANEMGVNVKTTSGPAIGRPGDLAAVLTALQPGDVL 61

Query: 110 FIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           FIDEIHRL   +EE+LYPAMEDF LD+++G+GPSARSV+++L  FTL+ ATTR G L+ P
Sbjct: 62  FIDEIHRLHRSIEEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAP 121

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           L+DRFG+  R+ +Y ++ L  IV+R A++  + +   AA EIA R+RGTPRIA RLLRRV
Sbjct: 122 LRDRFGVLSRVEYYTVDQLSAIVERTAEVFEVEIDSLAALEIARRARGTPRIANRLLRRV 181

Query: 230 RDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGL 289
           RDFA+V    T+T EI   AL  L +DK+G D +D + L  I   F GGPVG+ET+SA +
Sbjct: 182 RDFAQVRGNGTVTMEITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSAPI 241

Query: 290 SEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            E    IED+ EPY++Q GF+QRTPRGR++ P+A++H G++IP 
Sbjct: 242 GEESHTIEDVYEPYLLQIGFLQRTPRGRIVTPLAYEHFGMEIPK 285


>gi|57239404|ref|YP_180540.1| Holliday junction DNA helicase RuvB [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58579374|ref|YP_197586.1| Holliday junction DNA helicase B [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58617429|ref|YP_196628.1| Holliday junction DNA helicase B [Ehrlichia ruminantium str.
           Gardel]
 gi|81311314|sp|Q5FG39|RUVB_EHRRG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|81819219|sp|Q5HAK4|RUVB_EHRRW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|57161483|emb|CAH58409.1| Holliday junction DNA helicase RuvB [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58417041|emb|CAI28154.1| Holliday junction DNA helicase RuvB [Ehrlichia ruminantium str.
           Gardel]
 gi|58418000|emb|CAI27204.1| Holliday junction DNA helicase RuvB [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 331

 Score =  335 bits (859), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 184/328 (56%), Positives = 242/328 (73%), Gaps = 3/328 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M  ++ L S    ++  +IS +RP  L+EF GQ    SNLK+FI+AA  R E +DH+L  
Sbjct: 1   MFMKDILQSSECIEDQQNIS-MRPNLLDEFIGQSSVVSNLKIFIDAAYERKEPIDHILLY 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A+EL VNFRST+GP+++KAGDLAA+LTNL+ RDVLFIDEIHRL+  
Sbjct: 60  GPPGLGKTTLAHIIAKELKVNFRSTAGPLLSKAGDLAAILTNLQARDVLFIDEIHRLNRN 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EEILY AMEDF LD++VGEG  AR++++++  FTLI ATTR+GLL+NPL+DRFGIP+ L
Sbjct: 120 IEEILYSAMEDFSLDIIVGEGCGARTLRVDIPPFTLIGATTRIGLLSNPLRDRFGIPMHL 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  E+L  +++R AK+    +++  A EI++RSRGTPRIA RLLRR+RDF  V    T
Sbjct: 180 EFYSTEELTKVIKRAAKVIHTNISNNGAEEISLRSRGTPRIALRLLRRIRDFISVTKQDT 239

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           IT E AD ALLRL IDK+G D+ D++YL  I       P+GI+TIS+ LSE    IE+ I
Sbjct: 240 ITHEFADQALLRLGIDKLGLDRQDIKYLQFIYE--ANNPIGIDTISSALSEDTGNIEETI 297

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
           EPY+I+  FIQRTPRGR++   A  +L 
Sbjct: 298 EPYLIKINFIQRTPRGRVITQKAISYLN 325


>gi|284032304|ref|YP_003382235.1| Holliday junction DNA helicase RuvB [Kribbella flavida DSM 17836]
 gi|283811597|gb|ADB33436.1| Holliday junction DNA helicase RuvB [Kribbella flavida DSM 17836]
          Length = 350

 Score =  335 bits (858), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 168/336 (50%), Positives = 225/336 (66%), Gaps = 4/336 (1%)

Query: 2   MDRE--GLLSRNVS--QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           MD     L+S +    +E    S LRPRTL EF GQ      L++ + AA+ R  A DHV
Sbjct: 1   MDENVRPLVSADAVDLEERKIESALRPRTLAEFGGQRRVSEQLELVLHAARGRRRAPDHV 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTLA ++A EL    R TSGP I  AGDLAA+L+ L + +VLF+DEIHR+
Sbjct: 61  LLSGPPGLGKTTLAMIIAAELSAPLRVTSGPAIQHAGDLAAILSGLSEGEVLFLDEIHRM 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           S   EE+LY AMEDF++D++VG+GP A ++ + +  FTL+ ATTR GLL  PL+DRFG  
Sbjct: 121 SRPAEELLYMAMEDFRVDVIVGKGPGATAIPLEIPPFTLVGATTRAGLLPGPLRDRFGFT 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
             L FY   +L+ IV R A L  + +T EAA EIA RSRGTPRIA RLLRRVRD+AEV  
Sbjct: 181 GHLEFYAAAELEKIVNRSAALLDVDITPEAATEIASRSRGTPRIANRLLRRVRDYAEVRA 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
              +T  ++ AAL    +D+MG D+LD   L  + R FGGGPVG+ T++  + E R+ +E
Sbjct: 241 DGIVTIALSKAALDLYEVDRMGLDRLDRAVLDALCRRFGGGPVGLSTLAVAVGEERETVE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           ++ EP++++ G++ RTPRGR+  P AW+HLG+ +P 
Sbjct: 301 EVAEPFLVRSGYLARTPRGRVATPAAWRHLGLTVPK 336


>gi|294628362|ref|ZP_06706922.1| Holliday junction DNA helicase RuvB [Streptomyces sp. e14]
 gi|292831695|gb|EFF90044.1| Holliday junction DNA helicase RuvB [Streptomyces sp. e14]
          Length = 356

 Score =  335 bits (858), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 162/330 (49%), Positives = 220/330 (66%), Gaps = 1/330 (0%)

Query: 5   EGLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E L+      ED A  + LRP+ L EF GQ +    L + + AA+AR    DHVL  G P
Sbjct: 13  ERLVGSVADGEDQAVEAALRPKDLGEFIGQEKVREQLDLVLRAARARGATADHVLLSGAP 72

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTL+ ++A E+G   R TSGP I  AGDLAA+L++L++ +VLF+DEIHR+S   EE
Sbjct: 73  GLGKTTLSMIIAAEMGAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEE 132

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LY AMEDF++D++VG+GP A ++ + L  FTL+ ATTR GLL  PL+DRFG    + FY
Sbjct: 133 MLYMAMEDFRVDVIVGKGPGATAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTAHMEFY 192

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           E  +L+ +V R A L  + +    A EIA RSRGTPRIA RLLRRVRD+A+V     ITR
Sbjct: 193 EPAELERVVHRSASLLDVEIDTAGAAEIAGRSRGTPRIANRLLRRVRDYAQVKADGVITR 252

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           EIA AAL    +D  G D+LD   L  + + FGGGPVG+ T++  + E R+ +E++ EP+
Sbjct: 253 EIAAAALAVYEVDPRGLDRLDRAVLQALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPF 312

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           ++++G + RTPRGR+  P AW HLG+  P 
Sbjct: 313 LVREGLLARTPRGRVATPAAWAHLGLTPPR 342


>gi|295112190|emb|CBL28940.1| Holliday junction DNA helicase subunit RuvB [Synergistetes
           bacterium SGP1]
          Length = 358

 Score =  335 bits (858), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 167/332 (50%), Positives = 226/332 (68%), Gaps = 3/332 (0%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           D     S   + EDA +   RPR L +F GQ      L+++I+AA+ R E LDHVLF GP
Sbjct: 13  DEGRFFSSPRAAEDATV---RPRALADFIGQERVREKLRIYIDAARGRGEPLDHVLFYGP 69

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA+++A+E+G   R T+GP + +AGDLAA+++NLE  DVLFIDEIH +   VE
Sbjct: 70  PGLGKTTLAEIIAQEMGGQLRKTTGPALERAGDLAAIVSNLEANDVLFIDEIHSMPRQVE 129

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILYPAMEDF+L ++VG+GP A+++ + L RFTL  ATTR+GLLT+PL+ RFGI  +L+ 
Sbjct: 130 EILYPAMEDFELHIVVGKGPLAKTIGLALPRFTLCGATTRLGLLTSPLRARFGIVEQLSL 189

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  ++L  IV R A + G+ +  +AA EIA R+RGTPR+  +LLRRVRD A V     I 
Sbjct: 190 YTEQELARIVLRAAGVLGIRIAGDAAIEIARRARGTPRVVLKLLRRVRDVASVKGTGEID 249

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            +IAD A+  L ID  G D+ D + L  +   F GGPVG+ TI+A ++E    IED+ EP
Sbjct: 250 ADIADRAMNMLDIDAEGMDEGDRQILRAVVERFDGGPVGLGTIAAAINEEPQTIEDIYEP 309

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           Y+IQ+GF++RTPRGR     A+ +LG  +  R
Sbjct: 310 YLIQKGFLERTPRGRRATSNAYAYLGCPMRRR 341


>gi|282853887|ref|ZP_06263224.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes J139]
 gi|289425355|ref|ZP_06427132.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes SK187]
 gi|282583340|gb|EFB88720.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes J139]
 gi|289154333|gb|EFD03021.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes SK187]
          Length = 340

 Score =  335 bits (858), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 155/331 (46%), Positives = 218/331 (65%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M+   +       E A+ + LRP  L EF GQ      L + + A+K+R    DHVL  G
Sbjct: 1   MEHSPVDPSAEPPEKAEEAALRPGALAEFGGQQRVADQLGLVLAASKSRGTTPDHVLLSG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+    R +SGP I  AGDLAA+L++L   +V F+DEIHR+S   
Sbjct: 61  PPGLGKTTLAMIIASEMSAPIRISSGPAIQHAGDLAAILSSLVPGEVFFLDEIHRMSKPA 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMEDF++D++VG+GP A ++ I +  FTL+ ATTR GLL  PL+DRFG   +L+
Sbjct: 121 EEMLYLAMEDFRVDVVVGKGPGATAIPIEIPPFTLVGATTRAGLLPGPLRDRFGFTAQLD 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +YE+ DL+ IV R A + G+ + + AA  IA RSRGTPRIA RLLRRVRD+A+V H   +
Sbjct: 181 YYEVADLERIVTRSAGVIGVELAEGAAHTIASRSRGTPRIANRLLRRVRDWADVHHESPV 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T + A+ AL    +D +G D+LD   L  +   FGGGPVG+ T++  + E    +E++ E
Sbjct: 241 TPQGAETALDLYEVDPLGLDRLDRAVLHAVCLKFGGGPVGLSTLAISVGEEPQTVEEVAE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           P++++ GF+ RTPRGR+    AW+HLG++ P
Sbjct: 301 PFLVRLGFLMRTPRGRVATDRAWRHLGLEPP 331


>gi|295130718|ref|YP_003581381.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes SK137]
 gi|291376754|gb|ADE00609.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes SK137]
          Length = 340

 Score =  335 bits (858), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 155/331 (46%), Positives = 218/331 (65%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M+   +       E A+ + LRP  L EF GQ      L + + A+K+R    DHVL  G
Sbjct: 1   MEHSPVDPSAEPPEKAEEAALRPGALAEFGGQQRVADQLGLVLAASKSRGTTPDHVLLSG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+    R +SGP I  AGDLAA+L++L   +V F+DEIHR+S   
Sbjct: 61  PPGLGKTTLAMIIASEMSAPIRISSGPAIQHAGDLAAILSSLVPGEVFFLDEIHRMSKPA 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMEDF++D++VG+GP A ++ I +  FTL+ ATTR GLL  PL+DRFG   +L+
Sbjct: 121 EEMLYLAMEDFRVDVVVGKGPGATAIPIEIPPFTLVGATTRAGLLPGPLRDRFGFTAQLD 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +YE+ DL+ IV R A + G+ + + AA  IA RSRGTPRIA RLLRRVRD+A+V H   +
Sbjct: 181 YYEVADLERIVTRSAGVIGVELAEGAANTIASRSRGTPRIANRLLRRVRDWADVHHESPV 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T + A+ AL    +D +G D+LD   L  +   FGGGPVG+ T++  + E    +E++ E
Sbjct: 241 TPQGAETALDLYEVDPLGLDRLDRAVLHAVCLKFGGGPVGLSTLAISVGEEPQTVEEVAE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           P++++ GF+ RTPRGR+    AW+HLG++ P
Sbjct: 301 PFLVRLGFLMRTPRGRVATDRAWRHLGLEPP 331


>gi|149195243|ref|ZP_01872332.1| Holliday junction DNA helicase B [Caminibacter mediatlanticus TB-2]
 gi|149134585|gb|EDM23072.1| Holliday junction DNA helicase B [Caminibacter mediatlanticus TB-2]
          Length = 330

 Score =  335 bits (858), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 168/322 (52%), Positives = 236/322 (73%), Gaps = 2/322 (0%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
             VS E+     LRP+ L+E+ GQ +   NLKVFIEAAK R E+LDH+LF GPPGLGKTT
Sbjct: 7   EKVSFEEGYEKSLRPQNLDEYIGQEQIKKNLKVFIEAAKKRNESLDHMLFFGPPGLGKTT 66

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           LA ++A E+  N ++ S P++ K+GDLAA+LTNLE+ D+LFIDEIHRL   +EE+LY AM
Sbjct: 67  LANIIANEMNANIKTISAPMLEKSGDLAAILTNLEEGDILFIDEIHRLKAAIEEVLYSAM 126

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           EDF+LD+++G GP+A+++K+++++FTLI ATTR G+L+NPL+DRFG+  RLNFY  E+L 
Sbjct: 127 EDFRLDIVIGSGPAAQTIKLDVAKFTLIGATTRAGMLSNPLRDRFGMSFRLNFYNEEELA 186

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            I++  +K     + D+AA EIA RSRGTPRIA RLL+R+RDFAEV + K I  +IA   
Sbjct: 187 LIIKLASKKLNYEIKDDAAKEIAKRSRGTPRIALRLLKRIRDFAEVENKKIIDLKIAKYG 246

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           L  L I++ GFD+LD+R+L ++       P+G+ TI+A LSE  D IE++IEP++I  GF
Sbjct: 247 LDELGINEYGFDELDIRFLRLLVE--AKKPLGLSTIAAALSEDEDTIEEVIEPFLIANGF 304

Query: 310 IQRTPRGRLLMPIAWQHLGIDI 331
           I++TP+GR+    +++ L    
Sbjct: 305 IEKTPKGRIATRKSYEVLQFSP 326


>gi|254383612|ref|ZP_04998962.1| holliday junction DNA helicase RuvB [Streptomyces sp. Mg1]
 gi|194342507|gb|EDX23473.1| holliday junction DNA helicase RuvB [Streptomyces sp. Mg1]
          Length = 353

 Score =  335 bits (858), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 155/326 (47%), Positives = 220/326 (67%), Gaps = 1/326 (0%)

Query: 5   EGLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           + +++     ED A  + LRP+ L EF GQ +    L + ++AA+ R    DHVL  G P
Sbjct: 9   DRIVAAAADGEDTAVEAALRPKDLGEFVGQEKVRQQLDLVLKAARQRGATADHVLLSGAP 68

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTL+ ++A E+G   R TSGP I  AGDLAA+L++L++ +VLF+DEIHR+S   EE
Sbjct: 69  GLGKTTLSMIIAAEMGAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEE 128

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LY AMEDF++D++VG+GP A ++ + L  FTL+ ATTR GLL  PL+DRFG    + FY
Sbjct: 129 MLYMAMEDFRVDVIVGKGPGATAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTGHMEFY 188

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
             E+L+ ++ R A+L  + +    A EIA RSRGTPRIA RLLRRVRD+A+V     ITR
Sbjct: 189 APEELERVIHRSARLLDVEIDTAGAAEIAGRSRGTPRIANRLLRRVRDYAQVKADGVITR 248

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           E+A  AL    +D  G D+LD   L  + + FGGGPVG+ T++  + E R+ +E++ EP+
Sbjct: 249 EVAGTALQVYEVDARGLDRLDRAVLEALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPF 308

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGI 329
           ++++G + RTPRGR+  P AW HLG+
Sbjct: 309 LVREGLLARTPRGRVATPAAWVHLGL 334


>gi|307718816|ref|YP_003874348.1| holliday junction ATP-dependent DNA helicase RuvB [Spirochaeta
           thermophila DSM 6192]
 gi|306532541|gb|ADN02075.1| holliday junction ATP-dependent DNA helicase RuvB [Spirochaeta
           thermophila DSM 6192]
          Length = 342

 Score =  334 bits (857), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 166/327 (50%), Positives = 211/327 (64%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           +  LS    +EDA    LRP +L EF G+ E   NL+VFI AA+ R EALDHV   GPPG
Sbjct: 2   DHTLSPLKREEDAQEERLRPLSLSEFQGKEEIKENLRVFIHAARQRGEALDHVFLSGPPG 61

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTL  ++A ELGV  R TS P + K  DLA +LT L  R VLFIDEIHRL   +EE+
Sbjct: 62  LGKTTLGSIIAHELGVELRITSAPALEKPKDLAGILTTLSPRSVLFIDEIHRLKPAIEEM 121

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LY AMED+ +D ++G+GPSAR+V+I +  FTL+ ATT+ G L  PL  RFGI    N YE
Sbjct: 122 LYVAMEDYVIDWIIGQGPSARTVRIPVPPFTLVGATTKAGKLATPLVSRFGITFHFNLYE 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            ED+  +++R A++ GL V + A   ++  SRGTPRIA R+LRR RDFAEV     IT +
Sbjct: 182 KEDIIKVLRRSARILGLQVEEPAFDLLSSCSRGTPRIANRMLRRARDFAEVYGKGVITPQ 241

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           I    + RL ID+ G +  D R L  I   F GGPVG E+++  L E  D +ED  EPY+
Sbjct: 242 IVRLTMDRLGIDEAGLEAHDRRILDTIITKFDGGPVGAESLAIALGESVDTLEDFYEPYL 301

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           IQ GF+QRTPRGR++ P  + HL I  
Sbjct: 302 IQCGFLQRTPRGRIVTPRGYDHLNIQP 328


>gi|312196178|ref|YP_004016239.1| Holliday junction DNA helicase RuvB [Frankia sp. EuI1c]
 gi|311227514|gb|ADP80369.1| Holliday junction DNA helicase RuvB [Frankia sp. EuI1c]
          Length = 362

 Score =  334 bits (857), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 156/313 (49%), Positives = 219/313 (69%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPRTL EF GQ +A   L + +  A+ R    DHVL  GPPGLGKT+LA ++A+EL V 
Sbjct: 22  LRPRTLAEFVGQRKAREQLSIMLAGARGRGRPPDHVLLSGPPGLGKTSLAMIIAQELAVP 81

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGP I +AGDL A+LT L   +VLFIDEIHR++   EE+LY AMEDF++D+++G+G
Sbjct: 82  LRLTSGPAIERAGDLVAILTALAPGEVLFIDEIHRIARPAEELLYSAMEDFRVDVVLGKG 141

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P A ++ ++++ FTL+ ATTR GLLT P++DRFG    L+FY+ ++L  ++ R A+L G+
Sbjct: 142 PGATAIPLDVAPFTLVGATTRAGLLTGPMRDRFGFTAHLDFYDPDELVAVLARSARLLGV 201

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +T E A E+A RSRGTPRIA RLLRRVRD+AEV     +T ++A AAL    +D +G D
Sbjct: 202 ELTPEGATEVAGRSRGTPRIANRLLRRVRDYAEVRADGVVTLDVAHAALRVYDVDPLGLD 261

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           +LD   LT + + FGGGPVG+ T++  + E  + +ED+ EP++++ G + RT RGR+  P
Sbjct: 262 RLDRAVLTALVKRFGGGPVGLTTLAVSVGEEPETVEDVAEPFLLRAGLLVRTSRGRVATP 321

Query: 322 IAWQHLGIDIPHR 334
            A+ HLG D P +
Sbjct: 322 AAFTHLGFDPPDQ 334


>gi|283457994|ref|YP_003362601.1| holliday junction resolvasome, helicase subunit [Rothia
           mucilaginosa DY-18]
 gi|283134016|dbj|BAI64781.1| holliday junction resolvasome, helicase subunit [Rothia
           mucilaginosa DY-18]
          Length = 382

 Score =  334 bits (857), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 153/315 (48%), Positives = 211/315 (66%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
            + LRP++L++F GQ      L + +EA+K R  + DHVL  GPPGLGKTTLA ++A E+
Sbjct: 65  EAALRPKSLDDFVGQRRVRQQLSLVLEASKMRGRSADHVLLSGPPGLGKTTLAMIIAAEM 124

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138
               R TSGP I  +GDLAA+L++L   +VLF+DEIHR+S   EE+LY AMEDF++D++V
Sbjct: 125 DAPLRITSGPAIQHSGDLAAILSSLTPGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDIVV 184

Query: 139 GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKL 198
           G+G  A S+ + L +FTL+ ATTR GLL  PL+DRFG    L FY +E+L+ +++R A L
Sbjct: 185 GKGAGATSIPLELPQFTLVGATTRAGLLPGPLRDRFGFTGHLEFYSVEELELVLRRSAGL 244

Query: 199 TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKM 258
             + +T E   EIA RSRGTPRIA RLLRRVRD+A V     I    A  AL    +D  
Sbjct: 245 MDMQITSEGFTEIAGRSRGTPRIANRLLRRVRDWALVNGVDRINARDAATALDMYEVDSR 304

Query: 259 GFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRL 318
           G D+LD   L  +   FGGGPVG+ T++  + E  + +E + EPY++++G I RTPRGR+
Sbjct: 305 GLDRLDRAVLESLIHKFGGGPVGLSTLAIAVGEETETVETVAEPYLVREGLIGRTPRGRV 364

Query: 319 LMPIAWQHLGIDIPH 333
            +P AW+HLG++ P 
Sbjct: 365 ALPAAWEHLGMEAPE 379


>gi|313837772|gb|EFS75486.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL037PA2]
 gi|314927346|gb|EFS91177.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL044PA1]
 gi|314972424|gb|EFT16521.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL037PA3]
          Length = 342

 Score =  334 bits (857), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 154/323 (47%), Positives = 214/323 (66%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
                E A+ + LRP  L EF GQ      L + + A+K+R  A DHVL  GPPGLGKTT
Sbjct: 11  SAEPPEKAEEAALRPGALAEFGGQQRVADQLGLVLAASKSRGTAPDHVLLSGPPGLGKTT 70

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           LA ++A E+    R +SGP I  AGDLAA+L++L   +V F+DEIHR+S   EE+LY AM
Sbjct: 71  LAMIIASEMSAPIRISSGPAIQHAGDLAAILSSLVPGEVFFLDEIHRMSKPAEEMLYLAM 130

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           EDF++D++VG+GP A ++ I++  FTL+ ATTR GLL  PL+DRFG   +L++YE+ DL+
Sbjct: 131 EDFRVDVVVGKGPGATAIPIDIPPFTLVGATTRAGLLPGPLRDRFGFTAQLDYYEVADLE 190

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            IV R A + G+ + D  A  IA RSRGTPRIA RLLRRVRD+A+V     +T   A  A
Sbjct: 191 RIVTRSAGVIGVELADGTAHTIASRSRGTPRIANRLLRRVRDWADVNRESPVTPHGAQTA 250

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           L    +D +G D+LD   L+ +   FGGGPVG+ T++  + E    +E++ EP++++ GF
Sbjct: 251 LDLYEVDPLGLDRLDRAVLSAVCLKFGGGPVGLSTLAISVGEEPQTVEEVAEPFLVRLGF 310

Query: 310 IQRTPRGRLLMPIAWQHLGIDIP 332
           + RTPRGR+    AW+HLG++ P
Sbjct: 311 LMRTPRGRVATDRAWRHLGLEPP 333


>gi|182412102|ref|YP_001817168.1| Holliday junction DNA helicase RuvB [Opitutus terrae PB90-1]
 gi|177839316|gb|ACB73568.1| Holliday junction DNA helicase RuvB [Opitutus terrae PB90-1]
          Length = 345

 Score =  334 bits (857), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 165/315 (52%), Positives = 220/315 (69%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + LRP T  +FTGQ +    L+V + AAK R EAL+H+L  GPPGLGKTTLA ++  
Sbjct: 22  PAEAALRPLTFADFTGQPKTVERLQVMVGAAKQRGEALNHILLSGPPGLGKTTLAFILGH 81

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           ELG N R TSGPV+ KAGDLA LLTNLE+ D+LFIDEIHR+   VEE LY AMEDF+LD+
Sbjct: 82  ELGKNVRVTSGPVVEKAGDLAGLLTNLEEGDILFIDEIHRIPKTVEEYLYSAMEDFRLDI 141

Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA 196
           M+ +GP+ARSV+++L RFTL+ ATTR GLLT PL+ RF +  RL++Y+   L++IV+R  
Sbjct: 142 MIDQGPNARSVRLSLPRFTLVGATTRAGLLTAPLRSRFTLQTRLDYYDHATLESIVRRSC 201

Query: 197 KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAID 256
            L  + V    A EIA RSRGTPR+A  L+  VRDFA+      IT+ +A AAL  L ID
Sbjct: 202 GLLKVPVDQGGAHEIATRSRGTPRVANNLINFVRDFAQQRANGKITQPVAAAALELLEID 261

Query: 257 KMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRG 316
             G D++D R L ++A N+GG PVGI TI+  + E  + +E++ EP++IQ+G+IQRT  G
Sbjct: 262 AAGLDEMDKRMLRVMAENYGGRPVGISTIAVAVGEESETLEEVHEPFLIQEGYIQRTREG 321

Query: 317 RLLMPIAWQHLGIDI 331
           R+L P  +Q +G+  
Sbjct: 322 RMLTPKGYQAVGLKP 336


>gi|297626359|ref|YP_003688122.1| Holliday junction ATP-dependent DNA helicase [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296922124|emb|CBL56692.1| Holliday junction ATP-dependent DNA helicase [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 341

 Score =  334 bits (857), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 155/311 (49%), Positives = 215/311 (69%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP TLEEF GQ      L + + AAK R    DHVL  GPPGLGKTTLA ++A E+GV 
Sbjct: 21  LRPSTLEEFEGQPRVSDQLGLVLSAAKHRGTTPDHVLLSGPPGLGKTTLAMIIASEMGVP 80

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
              TSGP I   GDLAA+L+ L + +VLF+DEIHR+S   EE+LY AMEDF++D++VG+G
Sbjct: 81  LHITSGPAIQHPGDLAAILSGLVEGEVLFLDEIHRMSRPAEEMLYLAMEDFRVDVVVGKG 140

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P A ++ I +  FTL+ ATTRVGLL +PL+DRFG    L+FYE++DL++IV R + + G+
Sbjct: 141 PGATAIPIEIPAFTLVGATTRVGLLPSPLRDRFGFTGNLDFYEVDDLQSIVTRSSAMLGV 200

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + + +A EIA RSRGTPRIA RLLRRVRD+A+V +   +   +  AAL    +D +G D
Sbjct: 201 GLDEASAHEIASRSRGTPRIANRLLRRVRDYAQVNNQGRVDLALTRAALELYEVDPLGLD 260

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           +LD   L  I   FGGGPVG+ T++  ++E  + ++++ EP++++ GF+ RTPRGR+   
Sbjct: 261 RLDRAVLEAICTKFGGGPVGLSTLAISVAEEAETVQEVAEPFLVRLGFLMRTPRGRVATE 320

Query: 322 IAWQHLGIDIP 332
             W+HLG+  P
Sbjct: 321 AGWRHLGLTPP 331


>gi|153003865|ref|YP_001378190.1| Holliday junction DNA helicase RuvB [Anaeromyxobacter sp. Fw109-5]
 gi|171769468|sp|A7H910|RUVB_ANADF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|152027438|gb|ABS25206.1| Holliday junction DNA helicase RuvB [Anaeromyxobacter sp. Fw109-5]
          Length = 342

 Score =  334 bits (856), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 170/329 (51%), Positives = 227/329 (68%), Gaps = 1/329 (0%)

Query: 6   GLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
             +S    + E+     LRP T EE+ GQ +   N +V+ +AA+AR EALDHVL  GPPG
Sbjct: 7   REVSPGSQEGEERLEQSLRPATFEEYVGQEKLVENFRVYAKAARARGEALDHVLLSGPPG 66

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKT+LA ++ARELGV    TSGP + K GDLA LLT L  RD+LFIDEIHRLS  VEE 
Sbjct: 67  LGKTSLAHILARELGVALHVTSGPALVKKGDLAGLLTALAPRDILFIDEIHRLSPAVEEA 126

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPAMED++ D+++G G  A+++++ L RFTL+ ATTR GLL +PL+DRF I  RL +YE
Sbjct: 127 LYPAMEDYRFDVVLGAGLGAQTMEMKLERFTLVGATTRTGLLASPLRDRFPIQERLGYYE 186

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
             +L+ I  R A+   L V    A E+A R+RGTPRIA RLL+R RDFA+V    T+TRE
Sbjct: 187 PTELREIAVRAARKLALPVDPAGAEELARRARGTPRIAIRLLQRARDFAQVEGDGTLTRE 246

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           I +  L RL +D  G D +D R L ++   FGGGPVGI+ ++A + E RD +ED+ EP++
Sbjct: 247 IVETTLERLEVDGRGLDAMDRRILAVVLDTFGGGPVGIDAVAAAVGEERDTLEDVYEPFL 306

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +++GF+ RTPRGR+ +P A+ HLG + P 
Sbjct: 307 VREGFLARTPRGRVALPPAYAHLGRERPQ 335


>gi|313807655|gb|EFS46142.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL087PA2]
 gi|313818692|gb|EFS56406.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL046PA2]
 gi|313820462|gb|EFS58176.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL036PA1]
 gi|313822732|gb|EFS60446.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL036PA2]
 gi|313825334|gb|EFS63048.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL063PA1]
 gi|314925071|gb|EFS88902.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL036PA3]
 gi|314960392|gb|EFT04494.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL002PA2]
 gi|314978568|gb|EFT22662.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL072PA2]
 gi|314987986|gb|EFT32077.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL005PA2]
 gi|314989796|gb|EFT33887.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL005PA3]
 gi|315084174|gb|EFT56150.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL027PA2]
 gi|315085517|gb|EFT57493.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL002PA3]
 gi|315088426|gb|EFT60402.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL072PA1]
 gi|327331805|gb|EGE73542.1| holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL096PA3]
 gi|327443582|gb|EGE90236.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL013PA2]
 gi|328753337|gb|EGF66953.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL020PA1]
          Length = 342

 Score =  334 bits (856), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 155/330 (46%), Positives = 218/330 (66%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           +R  +       E A+ + LRP  L EF GQ      L + + A+K+R    DHVL  GP
Sbjct: 4   ERSPVDPSAEPPEKAEEAALRPGALAEFGGQQRVADQLGLVLAASKSRGTTPDHVLLSGP 63

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++A E+    R +SGP I  AGDLAA+L++L   +V F+DEIHR+S   E
Sbjct: 64  PGLGKTTLAMIIASEMSAPIRISSGPAIQHAGDLAAILSSLVPGEVFFLDEIHRMSKPAE 123

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LY AMEDF++D++VG+GP A ++ I +  FTL+ ATTR GLL  PL+DRFG   +L++
Sbjct: 124 EMLYLAMEDFRVDVVVGKGPGATAIPIEIPPFTLVGATTRAGLLPGPLRDRFGFTAQLDY 183

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           YE+ DL+ IV R A + G+ + + AA  IA RSRGTPRIA RLLRRVRD+A+V H   +T
Sbjct: 184 YEVADLERIVTRSAGVIGVELAEGAAHTIASRSRGTPRIANRLLRRVRDWADVHHESPVT 243

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            + A+ AL    +D +G D+LD   L  +   FGGGPVG+ T++  + E    +E++ EP
Sbjct: 244 PQGAETALDLYEVDPLGLDRLDRAVLHAVCLKFGGGPVGLSTLAISVGEEPQTVEEVAEP 303

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++++ GF+ RTPRGR+    AW+HLG++ P
Sbjct: 304 FLVRLGFLMRTPRGRVATDRAWRHLGLEPP 333


>gi|313792006|gb|EFS40107.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL110PA1]
 gi|327453275|gb|EGE99929.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL092PA1]
          Length = 342

 Score =  334 bits (856), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 154/323 (47%), Positives = 215/323 (66%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
                E A+ + LRP  L EF GQ      L + + A+K+R    DHVL  GPPGLGKTT
Sbjct: 11  SAEPPEKAEEAALRPGALAEFGGQQRVADQLGLVLAASKSRGTTPDHVLLSGPPGLGKTT 70

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           LA ++A E+    R +SGP I  AGDLAA+L++L   +V F+DEIHR+S   EE+LY AM
Sbjct: 71  LAMIIASEMSAPIRISSGPAIQHAGDLAAILSSLVPGEVFFLDEIHRMSKPAEEMLYLAM 130

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           EDF++D++VG+GP A ++ I +  FTL+ ATTR GLL  PL+DRFG   +L++YE+ DL+
Sbjct: 131 EDFRVDVVVGKGPGATAIPIEIPPFTLVGATTRAGLLPGPLRDRFGFTAQLDYYEVADLE 190

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            IV R A + G+ + + AA  IA RSRGTPRIA RLLRRVRD+A+V H   +T + A+ A
Sbjct: 191 RIVTRSAGVIGVELAEGAAHTIASRSRGTPRIANRLLRRVRDWADVHHESPVTPQGAETA 250

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           L    +D +G D+LD   L  +   FGGGPVG+ T++  + E    +E++ EP++++ GF
Sbjct: 251 LDLYEVDPLGLDRLDRAVLHAVCLKFGGGPVGLSTLAISVGEEPQTVEEVAEPFLVRLGF 310

Query: 310 IQRTPRGRLLMPIAWQHLGIDIP 332
           + RTPRGR+    AW+HLG++ P
Sbjct: 311 LMRTPRGRVATDRAWRHLGLEPP 333


>gi|254391316|ref|ZP_05006520.1| holliday junction ATP-dependent DNA helicase ruvB [Streptomyces
           clavuligerus ATCC 27064]
 gi|294811583|ref|ZP_06770226.1| Holliday junction ATP-dependent DNA helicase ruvB [Streptomyces
           clavuligerus ATCC 27064]
 gi|326440228|ref|ZP_08214962.1| Holliday junction DNA helicase RuvB [Streptomyces clavuligerus ATCC
           27064]
 gi|197705007|gb|EDY50819.1| holliday junction ATP-dependent DNA helicase ruvB [Streptomyces
           clavuligerus ATCC 27064]
 gi|294324182|gb|EFG05825.1| Holliday junction ATP-dependent DNA helicase ruvB [Streptomyces
           clavuligerus ATCC 27064]
          Length = 365

 Score =  333 bits (855), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 155/325 (47%), Positives = 218/325 (67%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           S    ++ A  + LRP++L+EF GQ      L + + AA+AR    DHVL  G PGLGKT
Sbjct: 24  SFADGEDQAVEAALRPKSLDEFVGQERVREQLDLVLRAARARGATADHVLLSGAPGLGKT 83

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           TL+ ++A E+    R TSGP I  AGDLAA+L++L++ +VLF+DEIHR+S   EE+LY A
Sbjct: 84  TLSMIIAAEMQAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEMLYMA 143

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           MEDF++D++VG+GP A ++ + L  FTL+ ATTR GLL  PL+DRFG    + FY+  +L
Sbjct: 144 MEDFRVDVIVGKGPGATAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTAHMEFYDPAEL 203

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           + +V R A L  + +  + A EIA RSRGTPRIA RLLRRVRD+A+V     ITRE+A A
Sbjct: 204 QRVVHRSALLLDVEIDTDGAAEIAGRSRGTPRIANRLLRRVRDYAQVKVDGRITREVACA 263

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL    +D  G D+LD   L  + + F GGPVG+ T++  + E R+ +E++ EP+++++G
Sbjct: 264 ALRVYEVDSRGLDRLDRAVLEALLKLFAGGPVGLSTLAVAVGEERETVEEVAEPFLVREG 323

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIPH 333
            + RTPRGR+  P AW HLG+  P 
Sbjct: 324 LLARTPRGRIATPAAWAHLGLVPPQ 348


>gi|313772297|gb|EFS38263.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL074PA1]
 gi|313810162|gb|EFS47883.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL083PA1]
 gi|313830493|gb|EFS68207.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL007PA1]
 gi|313833529|gb|EFS71243.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL056PA1]
 gi|314973493|gb|EFT17589.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL053PA1]
 gi|314976173|gb|EFT20268.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL045PA1]
 gi|314983805|gb|EFT27897.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL005PA1]
 gi|315080503|gb|EFT52479.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL078PA1]
 gi|315096040|gb|EFT68016.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL038PA1]
 gi|327326320|gb|EGE68110.1| holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL096PA2]
 gi|327445786|gb|EGE92440.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL043PA2]
 gi|327448231|gb|EGE94885.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL043PA1]
 gi|328760718|gb|EGF74284.1| holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL099PA1]
          Length = 342

 Score =  333 bits (855), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 154/323 (47%), Positives = 215/323 (66%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
                E A+ + LRP  L EF GQ      L + + A+K+R    DHVL  GPPGLGKTT
Sbjct: 11  SAEPPEKAEEAALRPGALAEFGGQQRVADQLGLVLAASKSRGTTPDHVLLSGPPGLGKTT 70

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           LA ++A E+    R +SGP I  AGDLAA+L++L   +V F+DEIHR+S   EE+LY AM
Sbjct: 71  LAMIIASEMSAPIRISSGPAIQHAGDLAAILSSLVPGEVFFLDEIHRMSKPAEEMLYLAM 130

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           EDF++D++VG+GP A ++ I +  FTL+ ATTR GLL  PL+DRFG   +L++YE+ DL+
Sbjct: 131 EDFRVDVVVGKGPGATAIPIEIPPFTLVGATTRAGLLPGPLRDRFGFTAQLDYYEVADLE 190

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            IV R A + G+ + + AA  IA RSRGTPRIA RLLRRVRD+A+V H   +T + A+ A
Sbjct: 191 RIVTRSAGVIGVELAEGAANTIASRSRGTPRIANRLLRRVRDWADVHHESPVTPQGAETA 250

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           L    +D +G D+LD   L  +   FGGGPVG+ T++  + E    +E++ EP++++ GF
Sbjct: 251 LDLYEVDPLGLDRLDRAVLHAVCLKFGGGPVGLSTLAISVGEEPQTVEEVAEPFLVRLGF 310

Query: 310 IQRTPRGRLLMPIAWQHLGIDIP 332
           + RTPRGR+    AW+HLG++ P
Sbjct: 311 LMRTPRGRVATDRAWRHLGLEPP 333


>gi|313764320|gb|EFS35684.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL013PA1]
 gi|313802044|gb|EFS43278.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL110PA2]
 gi|313812810|gb|EFS50524.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL025PA1]
 gi|313815858|gb|EFS53572.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL059PA1]
 gi|313827629|gb|EFS65343.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL063PA2]
 gi|313838865|gb|EFS76579.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL086PA1]
 gi|314915310|gb|EFS79141.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL005PA4]
 gi|314918139|gb|EFS81970.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL050PA1]
 gi|314920216|gb|EFS84047.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL050PA3]
 gi|314923583|gb|EFS87414.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL001PA1]
 gi|314931739|gb|EFS95570.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL067PA1]
 gi|314955640|gb|EFT00042.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL027PA1]
 gi|314958036|gb|EFT02139.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL002PA1]
 gi|314962662|gb|EFT06762.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL082PA1]
 gi|314966628|gb|EFT10727.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL082PA2]
 gi|314967472|gb|EFT11571.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL037PA1]
 gi|315077878|gb|EFT49929.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL053PA2]
 gi|315092023|gb|EFT63999.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL110PA4]
 gi|315092850|gb|EFT64826.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL060PA1]
 gi|315098668|gb|EFT70644.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL059PA2]
 gi|315101329|gb|EFT73305.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL046PA1]
 gi|315103630|gb|EFT75606.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL050PA2]
 gi|315108547|gb|EFT80523.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL030PA2]
 gi|327327452|gb|EGE69228.1| holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL103PA1]
 gi|327450648|gb|EGE97302.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL087PA3]
 gi|327454014|gb|EGF00669.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL083PA2]
 gi|328753272|gb|EGF66888.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL025PA2]
 gi|328754066|gb|EGF67682.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL087PA1]
          Length = 342

 Score =  333 bits (855), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 154/323 (47%), Positives = 215/323 (66%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
                E A+ + LRP  L EF GQ      L + + A+K+R    DHVL  GPPGLGKTT
Sbjct: 11  SAEPPEKAEEAALRPGALAEFGGQQRVADQLGLVLAASKSRGTTPDHVLLSGPPGLGKTT 70

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           LA ++A E+    R +SGP I  AGDLAA+L++L   +V F+DEIHR+S   EE+LY AM
Sbjct: 71  LAMIIASEMSAPIRISSGPAIQHAGDLAAILSSLVPGEVFFLDEIHRMSKPAEEMLYLAM 130

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           EDF++D++VG+GP A ++ I +  FTL+ ATTR GLL  PL+DRFG   +L++YE+ DL+
Sbjct: 131 EDFRVDVVVGKGPGATAIPIEIPPFTLVGATTRAGLLPGPLRDRFGFTAQLDYYEVADLE 190

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            IV R A + G+ + + AA  IA RSRGTPRIA RLLRRVRD+A+V H   +T + A+ A
Sbjct: 191 RIVTRSAGVIGVELAEGAAHTIASRSRGTPRIANRLLRRVRDWADVHHESPVTPQGAETA 250

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           L    +D +G D+LD   L  +   FGGGPVG+ T++  + E    +E++ EP++++ GF
Sbjct: 251 LDLYEVDPLGLDRLDRAVLHAVCLKFGGGPVGLSTLAISVGEEPQTVEEVAEPFLVRLGF 310

Query: 310 IQRTPRGRLLMPIAWQHLGIDIP 332
           + RTPRGR+    AW+HLG++ P
Sbjct: 311 LMRTPRGRVATDRAWRHLGLEPP 333


>gi|297170678|gb|ADI21702.1| holliday junction resolvasome, helicase subunit [uncultured
           Verrucomicrobiales bacterium HF0130_14P10]
          Length = 347

 Score =  333 bits (855), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 168/326 (51%), Positives = 223/326 (68%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
             LS ++ ++D   + LRP T E+FTGQ +    LKV + AA  R + L HVL  GPPGL
Sbjct: 10  EFLSESLERKDDADAALRPPTFEDFTGQAKTIERLKVIVGAASDREDPLKHVLLCGPPGL 69

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLA ++A+EL    R TSGPVI K GDLA LLTNL++ DVLFIDEIHRL   VEE L
Sbjct: 70  GKTTLAYIIAKELNREIRITSGPVIDKPGDLAGLLTNLQEGDVLFIDEIHRLPKTVEEYL 129

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           Y AMEDF++D+M+ +GP+ARSV++ + RFTLI ATTRVGLLT P++ RF +  RL++Y  
Sbjct: 130 YSAMEDFRIDIMIDQGPNARSVRLEIPRFTLIGATTRVGLLTAPMRSRFTLQTRLDYYGR 189

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           +DL TIV+R  KL      ++ A EIA R+RGTPRIA  L+   RDFAE      IT E+
Sbjct: 190 DDLATIVKRSCKLLETPFDEDGAKEIAGRARGTPRIANNLIHFARDFAEQRSEGKITSEV 249

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           A  AL  L ID  G D++D R L ++A N+ GGPVG+ T++  ++E    +E++ EP++I
Sbjct: 250 AAQALELLEIDNNGLDEMDKRILRLMADNYRGGPVGLGTVAVAVNEEEHTLEEVHEPFLI 309

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDI 331
           Q+G+IQRTP+GR L    WQ +G+  
Sbjct: 310 QEGYIQRTPQGRALTAKGWQVIGLPP 335


>gi|332675563|gb|AEE72379.1| holliday junction ATP-dependent DNA helicase RuvB
           [Propionibacterium acnes 266]
          Length = 342

 Score =  333 bits (855), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 155/330 (46%), Positives = 218/330 (66%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           +R  +       E A+ + LRP  L EF GQ      L + + A+K+R    DHVL  GP
Sbjct: 4   ERSPVDPSAEPPEKAEEAALRPGALAEFGGQQRVADQLGLVLAASKSRGTTPDHVLLSGP 63

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++A E+    R +SGP I  AGDLAA+L++L   +V F+DEIHR+S   E
Sbjct: 64  PGLGKTTLAMIIASEMSAPIRISSGPAIQHAGDLAAILSSLVPGEVFFLDEIHRVSKPAE 123

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LY AMEDF++D++VG+GP A ++ I +  FTL+ ATTR GLL  PL+DRFG   +L++
Sbjct: 124 EMLYLAMEDFRVDVVVGKGPGATAIPIEIPPFTLVGATTRAGLLPGPLRDRFGFTAQLDY 183

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           YE+ DL+ IV R A + G+ + + AA  IA RSRGTPRIA RLLRRVRD+A+V H   +T
Sbjct: 184 YEVADLERIVTRSAGVIGVELAEGAAHTIASRSRGTPRIANRLLRRVRDWADVHHESPVT 243

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            + A+ AL    +D +G D+LD   L  +   FGGGPVG+ T++  + E    +E++ EP
Sbjct: 244 PQGAETALDLYEVDPLGLDRLDRAVLHAVCLKFGGGPVGLSTLAISVGEEPQTVEEVAEP 303

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++++ GF+ RTPRGR+    AW+HLG++ P
Sbjct: 304 FLVRLGFLMRTPRGRVATDRAWRHLGLEPP 333


>gi|93005515|ref|YP_579952.1| Holliday junction DNA helicase B [Psychrobacter cryohalolentis K5]
 gi|92393193|gb|ABE74468.1| Holliday junction DNA helicase subunit RuvB [Psychrobacter
           cryohalolentis K5]
          Length = 358

 Score =  333 bits (855), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 187/326 (57%), Positives = 244/326 (74%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M ++ L++      DA  + +RP  L E+ GQ      ++VFI+AA+AR EALDH L  G
Sbjct: 32  MMQDRLINPLEGAADAPDANIRPALLAEYIGQPVVREQMEVFIQAARARDEALDHTLIFG 91

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++ARE+G N RSTSGPV+ +AGDLAA+LTNLE  DVLFIDEIHRLS ++
Sbjct: 92  PPGLGKTTLANIIAREMGGNLRSTSGPVLERAGDLAAMLTNLEAGDVLFIDEIHRLSPVI 151

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILYPAMEDFQLD+M+GEGP+ARS+K++L  FTL+AATTR GLLT+PL+DRFGI  RL 
Sbjct: 152 EEILYPAMEDFQLDIMIGEGPAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRLE 211

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY I DL TIV R A+L  + ++++ A EIA R+RGTPRIA RLLRRVRD+A+V    +I
Sbjct: 212 FYNIADLTTIVSRAARLMRVPMSEDGAVEIARRARGTPRIANRLLRRVRDYAQVRGDGSI 271

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
              IA +AL  LA+D+ G D LD RY+ ++   F GGP G+E ++A ++E R  +ED+IE
Sbjct: 272 NGAIAGSALDMLAVDRRGLDHLDRRYIEILHERFDGGPAGVEAVAAAMAEDRGTLEDVIE 331

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHL 327
           PY+IQQG++ RT RGR+L  +A   +
Sbjct: 332 PYLIQQGYVLRTARGRVLTQMAIDQM 357


>gi|298252763|ref|ZP_06976557.1| Holliday junction resolvasome, helicase subunit [Gardnerella
           vaginalis 5-1]
 gi|297533127|gb|EFH72011.1| Holliday junction resolvasome, helicase subunit [Gardnerella
           vaginalis 5-1]
          Length = 371

 Score =  333 bits (855), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 159/324 (49%), Positives = 217/324 (66%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           S  +  E      LRPR LE F GQ    + L++F++AAK R  A DH+L  GPPGLGKT
Sbjct: 41  STPLGNEQLSDEELRPRALEGFIGQPVLKAQLQLFLDAAKKRDVAPDHMLLAGPPGLGKT 100

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           TLA +VA EL V  R TSGP I  AGDLA++L+ L+  +VLFIDEIHRL    EE+LY A
Sbjct: 101 TLAMIVANELQVPIRITSGPAIQHAGDLASILSALDAGEVLFIDEIHRLPRAAEELLYIA 160

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           MEDF++D+MVG+GP A S+ + L RFT++ ATTR G+L +PL+ RFG    L+FY  E+L
Sbjct: 161 MEDFRVDVMVGKGPGASSIPLTLPRFTVVGATTREGMLPSPLRARFGFTAHLDFYPHEEL 220

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           + +++R AK+ G+ + D+AA E+++RSRGTPRIA RLLRRVRD+A V     +  E    
Sbjct: 221 EKLIERSAKVLGIRLIDQAAKELSLRSRGTPRIANRLLRRVRDWAIVHDLSEVNHEAVVE 280

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL    ID  G D+LD+  L  +   F GGPVG+  ++A + E  + +E + EPY++++G
Sbjct: 281 ALALYQIDTQGLDRLDIAVLKAMVCQFNGGPVGLNNLAAMVGEEAETVETVCEPYLVREG 340

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIP 332
           F+ RTP+GR+    AW+HLG   P
Sbjct: 341 FLIRTPKGRVATSKAWKHLGFKEP 364


>gi|15827160|ref|NP_301423.1| Holliday junction DNA helicase RuvB [Mycobacterium leprae TN]
 gi|221229638|ref|YP_002503054.1| Holliday junction DNA helicase RuvB [Mycobacterium leprae Br4923]
 gi|13432236|sp|P40833|RUVB_MYCLE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|254767434|sp|B8ZUI2|RUVB_MYCLB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|13092708|emb|CAC29991.1| Holliday junction helicase component [Mycobacterium leprae]
 gi|219932745|emb|CAR70576.1| Holliday junction helicase component [Mycobacterium leprae Br4923]
          Length = 349

 Score =  333 bits (855), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 163/330 (49%), Positives = 227/330 (68%), Gaps = 1/330 (0%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           DR+   +  V + D D+S LRPR+L EF GQ      L++ IE AK R    DH+L  GP
Sbjct: 7   DRDVSPALTVGEADIDVS-LRPRSLREFIGQPRVREQLQLVIEGAKNRGATPDHILLSGP 65

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKT+LA ++A ELG + R TSGP + +AGDLA +L+NL + DVLFIDEIHR++   E
Sbjct: 66  PGLGKTSLAMIIAAELGSSLRMTSGPALERAGDLAVMLSNLVEHDVLFIDEIHRIARPAE 125

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LY AMEDF++D++VG+GP A S+ + ++ FTL+ ATTR G LT PL+DRFG    ++F
Sbjct: 126 EMLYLAMEDFRVDVIVGKGPGATSIPLEVAPFTLVGATTRSGALTGPLRDRFGFTAHMDF 185

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           YE  +L+ ++ R A + G+ +  EA  EIA RSRGTPRIA RLLRRVRDFAEV     IT
Sbjct: 186 YEPTELEGVLARAAGILGIELGVEAGAEIARRSRGTPRIANRLLRRVRDFAEVRADGVIT 245

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           R++A AAL    +D++G D+LD   L+ + R+FGGGPVG+ T++  + E    +E++ EP
Sbjct: 246 RDVAKAALAVYDVDELGLDRLDRAVLSALTRSFGGGPVGVSTLAVAVGEEATTVEEVCEP 305

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++++ G + RTPRGR+    AW +L +  P
Sbjct: 306 FLVRAGMVARTPRGRVATAQAWTYLCMTPP 335


>gi|291456790|ref|ZP_06596180.1| holliday junction DNA helicase RuvB [Bifidobacterium breve DSM
           20213]
 gi|291382067|gb|EFE89585.1| holliday junction DNA helicase RuvB [Bifidobacterium breve DSM
           20213]
          Length = 354

 Score =  333 bits (854), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 157/323 (48%), Positives = 216/323 (66%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           S+ +  E      LRP  LE F GQ    + L++F++AA+ R    DH+L  GPPGLGKT
Sbjct: 24  SQPIGNEPVSDEELRPHVLEGFIGQPRLKAQLQLFLDAARKRDVPPDHILLAGPPGLGKT 83

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           TLA +VA EL V  R TSGP +  AGDLA++L++L+  +VLFIDEIHRL    EE+LY A
Sbjct: 84  TLAMIVANELEVPIRVTSGPAVQHAGDLASILSSLDTGEVLFIDEIHRLPRAAEELLYIA 143

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           MEDF++D+MVG+GP A S+ + L RFT+I ATTR G+L +PL+ RFG    L+FY  E+L
Sbjct: 144 MEDFRVDVMVGKGPGASSIPLTLPRFTVIGATTREGMLPSPLRARFGFTAHLDFYPHEEL 203

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           + +++R A + G+ + + +A E+A+RSRGTPRIA RLLRRVRD+A V     +       
Sbjct: 204 EKLIERSASVLGVNLDEGSAHELALRSRGTPRIANRLLRRVRDWAIVHDLIVVHPADVKE 263

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL    ID  G D+LD+  L  I RNF GGPVG+  ++A + E  + +E + EPY++++G
Sbjct: 264 ALALYQIDSEGLDRLDIAVLNAIVRNFNGGPVGLNNLAAMVGEESETVETVCEPYLVREG 323

Query: 309 FIQRTPRGRLLMPIAWQHLGIDI 331
           F+ RTP+GR+    AWQHLGI  
Sbjct: 324 FMVRTPKGRVATEKAWQHLGITP 346


>gi|297622864|ref|YP_003704298.1| Holliday junction DNA helicase RuvB [Truepera radiovictrix DSM
           17093]
 gi|297164044|gb|ADI13755.1| Holliday junction DNA helicase RuvB [Truepera radiovictrix DSM
           17093]
          Length = 343

 Score =  333 bits (854), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 165/317 (52%), Positives = 219/317 (69%), Gaps = 3/317 (0%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            LRPR L ++ GQ +    L V++EAAK+R EALDHVL  GPPGLGKTTLA +VA ELGV
Sbjct: 6   ALRPRALADYVGQTKLKEKLAVYLEAAKSRGEALDHVLLYGPPGLGKTTLAHIVAYELGV 65

Query: 81  NFRSTSGPVIAKAGDLAALLTN-LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
           N R TSGP I K GDLAA+LTN L++ DVLFIDEIHRL  + EE LYPAMEDF++D+++G
Sbjct: 66  NIRVTSGPAIEKPGDLAAILTNSLDEGDVLFIDEIHRLGRVAEEHLYPAMEDFKVDIILG 125

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199
           +GP+AR+++++L RFTLI ATTR GL+T P++ RFGI   L +Y   +L   V R A+L 
Sbjct: 126 QGPAARTIRLDLPRFTLIGATTRSGLITGPMRSRFGIIEHLEYYTAAELAAGVTRDAQLL 185

Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259
           G  +  +AA EI  R+RGT RIA RLLRRVRDFAEVA  + ++   A +AL  L ID++G
Sbjct: 186 GFRIDHDAALEIGRRARGTMRIAKRLLRRVRDFAEVAGEQQVSLARAQSALNDLGIDELG 245

Query: 260 FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLL 319
            +  D   L  +   F GGP G+ T++  + E  + +E++ EP++IQ G + RTPRGR+ 
Sbjct: 246 LEARDRVILETLITKFAGGPTGLNTLATAVGEDGNTLEEVYEPFLIQNGLLSRTPRGRVA 305

Query: 320 MPIAWQHLGID--IPHR 334
              A+ HLG     P +
Sbjct: 306 TERAYAHLGYPYTPPPQ 322


>gi|126642623|ref|YP_001085607.1| Holliday junction DNA helicase RuvB [Acinetobacter baumannii ATCC
           17978]
          Length = 297

 Score =  333 bits (854), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 174/294 (59%), Positives = 223/294 (75%)

Query: 40  LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAAL 99
           +++FI AA+ R EALDH L  GPPGLGKTTLA ++ARE+G N +STSGPV+ +AGDLAA+
Sbjct: 1   MEIFIGAARGRGEALDHTLIFGPPGLGKTTLANIIAREMGGNLKSTSGPVLERAGDLAAM 60

Query: 100 LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA 159
           LTNLE+ DVLFIDEIHRLS ++EEILYPAMED+QLD+M+GEGP+ARS+K++L  FTL+AA
Sbjct: 61  LTNLEEGDVLFIDEIHRLSPVIEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVAA 120

Query: 160 TTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTP 219
           TTR GLLT+PL+DRFGI  RL FY +EDL  IV R A L  + +T E A E+A RSRGTP
Sbjct: 121 TTRAGLLTSPLRDRFGIVQRLEFYSVEDLTHIVSRSANLMDVPITVEGAEEVARRSRGTP 180

Query: 220 RIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGP 279
           RIA RLLRRVRD+A+V     +  E+A  AL  L +DK G D LD RYL+M+   F GGP
Sbjct: 181 RIANRLLRRVRDYAQVKGTGEVNHEMAQRALDMLNVDKAGLDTLDRRYLSMLLERFDGGP 240

Query: 280 VGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            G+E ++A ++E    +ED+IEPY+IQQG++ RT RGR+    ++   G+  P 
Sbjct: 241 AGVEALAAAMAEDSGTLEDVIEPYLIQQGYVMRTARGRIATNQSYLQFGMTPPE 294


>gi|308235710|ref|ZP_07666447.1| Holliday junction DNA helicase RuvB [Gardnerella vaginalis ATCC
           14018]
 gi|311114740|ref|YP_003985961.1| crossover junction ATP-dependent DNA helicase RuvB [Gardnerella
           vaginalis ATCC 14019]
 gi|310946234|gb|ADP38938.1| crossover junction ATP-dependent DNA helicase RuvB [Gardnerella
           vaginalis ATCC 14019]
          Length = 353

 Score =  333 bits (854), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 159/332 (47%), Positives = 225/332 (67%), Gaps = 1/332 (0%)

Query: 3   DREGLLSRN-VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           D   ++S + +  E      LRP  L+ F GQ    + L++F++AA+ R    DH+L  G
Sbjct: 19  DSLRIVSSSPIGNEQISDEELRPHALDGFIGQPLLKAQLQLFLDAARLRDVPPDHMLLAG 78

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA +VA ELGV+ R TSGP I  AGDLA++L++L+  +VLFIDEIHRL    
Sbjct: 79  PPGLGKTTLAMIVANELGVSIRVTSGPAIQHAGDLASILSSLDTGEVLFIDEIHRLPRAA 138

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMEDF++D+MVG+GP A S+ + L  FT++ ATTR G+L +PL+ RFG    L+
Sbjct: 139 EELLYIAMEDFRVDVMVGKGPGASSIPLTLPHFTVVGATTREGMLPSPLRARFGFTAHLD 198

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY  ++L+ +++R + L G+ + D+AA E+A+RSRGTPRIA RLLRRVRD+A V + K +
Sbjct: 199 FYPHDELEKLIERSSVLLGVHLVDQAAKELAIRSRGTPRIANRLLRRVRDWAVVHNLKDV 258

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
            RE    AL    ID  G D+LD+  L  I  +F GGPVG+  ++A + E  + +E + E
Sbjct: 259 NRESVIEALSLYQIDTQGLDRLDIAVLKAIVNHFNGGPVGLNNLAAMVGEEAETVETVCE 318

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           PY++++GF+ RTP+GR+    AWQHLG+  P 
Sbjct: 319 PYLVREGFLIRTPKGRVATEKAWQHLGLKAPD 350


>gi|223039370|ref|ZP_03609659.1| holliday junction DNA helicase RuvB [Campylobacter rectus RM3267]
 gi|222879431|gb|EEF14523.1| holliday junction DNA helicase RuvB [Campylobacter rectus RM3267]
          Length = 382

 Score =  333 bits (854), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 166/328 (50%), Positives = 233/328 (71%), Gaps = 2/328 (0%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MDR   + +   + D ++S LRP   E++ GQ +   NL VFI+AAK R E LDHVLF G
Sbjct: 44  MDRIVEIEKISFENDFEVS-LRPTRFEDYIGQEKIKQNLGVFIKAAKKRGECLDHVLFYG 102

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+GV+ + T+ P+I K+GDLAA+LTNL++ DVLFIDEIHRLS  +
Sbjct: 103 PPGLGKTTLAHIIANEMGVSIKMTAAPMIEKSGDLAAVLTNLQEGDVLFIDEIHRLSPAI 162

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMEDF+LD+++G GP+A+++KI+L +FTLI ATTR G+++ PL+DRFG+  RL 
Sbjct: 163 EEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMISAPLRDRFGMDFRLQ 222

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY  E+L  IVQ  +   G      AA E+A RSR TPRIA RLL+R+RDFAEV   + I
Sbjct: 223 FYTREELARIVQIASVKLGKECEKAAALEVAARSRATPRIALRLLKRIRDFAEVNDEEII 282

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           ++  A  AL  L ++ +GFD++D++YL ++       P+G+ TI+A LSE    +ED+IE
Sbjct: 283 SQPRAKEALDALGVNDIGFDEMDIKYLEILL-AAKRRPMGLSTIAAALSEDEGTVEDVIE 341

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           PY++  G+I+RT +GRL    A++   +
Sbjct: 342 PYLLANGYIERTAKGRLASAKAYEVFKL 369


>gi|183219942|ref|YP_001837938.1| Holliday junction DNA helicase RuvB [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|189910066|ref|YP_001961621.1| Holliday junction DNA helicase RuvB [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167774742|gb|ABZ93043.1| Holliday junction DNA helicase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167778364|gb|ABZ96662.1| Holliday junction DNA helicase RuvB [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
          Length = 341

 Score =  333 bits (854), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 153/321 (47%), Positives = 212/321 (66%), Gaps = 3/321 (0%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
              +E+ +   LRP  L EF GQ E  +NL V++EAA+ R   LDHVL  GPPGLGKTTL
Sbjct: 9   QAGEEEPN---LRPTKLSEFIGQKEVLANLSVYVEAARKRKSPLDHVLISGPPGLGKTTL 65

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           A ++A EL V F  TS P I+K  DL   LT L+  +VLFIDEIH      EE+LYPAME
Sbjct: 66  ANIIANELAVAFTPTSAPAISKGADLVRFLTLLKTNEVLFIDEIHGFIKKQEELLYPAME 125

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           +F +DL+VGEG +A +++I L  FTL+ ATTR GL+++PL+ RFGI ++L+FY  E+++ 
Sbjct: 126 NFFVDLVVGEGVTANALQIQLQPFTLVGATTRSGLVSDPLKSRFGIHLKLDFYTDEEMQI 185

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           IV R AKL G+ +    A E+  RSR TPRIA  LL+RVRDFAEV +  +++ +    A 
Sbjct: 186 IVDRSAKLLGVELGQGVAMEVGKRSRKTPRIANHLLKRVRDFAEVNNETSVSLKTCRYAF 245

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
            R+ +D +G D +D + L ++   +GGGPVGI+ I+  L E    IED  EP++++ G I
Sbjct: 246 DRMGVDHLGLDAVDRQILDILISRYGGGPVGIKPIAVVLGEEERTIEDTYEPFLVRVGLI 305

Query: 311 QRTPRGRLLMPIAWQHLGIDI 331
            RTP+GR+    A++HLG+  
Sbjct: 306 DRTPQGRVATKKAYEHLGLPY 326


>gi|319947802|ref|ZP_08021996.1| Holliday junction DNA helicase RuvB [Dietzia cinnamea P4]
 gi|319438526|gb|EFV93452.1| Holliday junction DNA helicase RuvB [Dietzia cinnamea P4]
          Length = 368

 Score =  333 bits (853), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 163/331 (49%), Positives = 219/331 (66%), Gaps = 1/331 (0%)

Query: 5   EGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E  LS +++  D D+   LRPR+L EF GQ      L + + AA  R    DH+LF GPP
Sbjct: 19  EAELSASLTPFDTDVEGALRPRSLGEFIGQETVREQLDLVLTAATRRGVVPDHLLFSGPP 78

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKT+LA +VA ELG + R TSGP + + GDLAA+L+NL + DVLFIDEIHR++   EE
Sbjct: 79  GLGKTSLAMIVAAELGGSLRITSGPALERPGDLAAMLSNLIEGDVLFIDEIHRIARPAEE 138

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LY AMEDF++D+MVG+GP A S+ + ++ FTL+ ATTR G LT PL+DRFG    ++FY
Sbjct: 139 MLYLAMEDFRIDIMVGKGPGATSIPLEIAPFTLVGATTRSGALTGPLRDRFGFTAHMDFY 198

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
              DL  IV R A++  + V  +AA EIA RSRGTPRIA RLLRRVRDFAEV     IT 
Sbjct: 199 TDADLARIVTRAAEILAIPVDPDAALEIAGRSRGTPRIANRLLRRVRDFAEVRADGRITV 258

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
            +A AAL    +D++G D+LD   L  +     GGPVG+ T++  + E    +E++ EP+
Sbjct: 259 PVARAALEVYEVDELGLDRLDRAVLRALLVQHEGGPVGLSTLAVAVGEESTTLEEVCEPF 318

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           +++ G + RTPRGR+    AW HLG+  P +
Sbjct: 319 LVRAGLLARTPRGRIATAAAWDHLGLTRPDK 349


>gi|212715819|ref|ZP_03323947.1| hypothetical protein BIFCAT_00720 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661186|gb|EEB21761.1| hypothetical protein BIFCAT_00720 [Bifidobacterium catenulatum DSM
           16992]
          Length = 357

 Score =  333 bits (853), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 159/332 (47%), Positives = 221/332 (66%), Gaps = 1/332 (0%)

Query: 3   DREGLLSRN-VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           +   ++S + V  E      LRP  L+ F GQ    + L++F++AA+ R    DH+L  G
Sbjct: 17  ESLRMVSASPVGNEPVSDEELRPHVLDGFIGQPRLKAQLQLFLDAARKRDVPPDHILLAG 76

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA +VA ELGV  R TSGP I  AGDLA++L++L+  +VLFIDEIHRL    
Sbjct: 77  PPGLGKTTLAMIVANELGVPIRVTSGPAIQHAGDLASILSSLDAGEVLFIDEIHRLPRAA 136

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMEDF++D+MVG+GP A S+ + L RFT+I ATTR G+L +PL+ RFG    L+
Sbjct: 137 EELLYIAMEDFRVDVMVGKGPGASSIPLTLPRFTVIGATTREGMLPSPLRARFGFTAHLD 196

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY  E+L+ +++R + + G+ + D AA ++AMRSRGTPRIA RLLRRVRD+A V   +T+
Sbjct: 197 FYPHEELEKLIERSSAVLGIRLEDGAAHQLAMRSRGTPRIANRLLRRVRDWAIVHDLETV 256

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
                  AL    ID  G D+LD+  L  I  NF GGPVG+  +SA + E  + +E + E
Sbjct: 257 HPNDVKEALALYQIDTEGLDRLDIAVLKAIVTNFNGGPVGLNNLSAMVGEESETVETVCE 316

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           PY++++GF+ RTP+GR+    AW+HLG+    
Sbjct: 317 PYLVREGFLVRTPKGRVATRKAWEHLGLVPDE 348


>gi|326773261|ref|ZP_08232544.1| holliday junction DNA helicase RuvB [Actinomyces viscosus C505]
 gi|326636491|gb|EGE37394.1| holliday junction DNA helicase RuvB [Actinomyces viscosus C505]
          Length = 346

 Score =  333 bits (853), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 158/321 (49%), Positives = 217/321 (67%), Gaps = 1/321 (0%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           + E A  + LRP+ LE+FTGQ      L V + +A AR    DHVL  GPPGLGKTTLA 
Sbjct: 19  ATERAAEAALRPKRLEDFTGQEVVRGQLSVVLRSALARGVTADHVLLSGPPGLGKTTLAM 78

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++A E+  + R TSGP I  AGDLAA+L++LE+ DVLFIDEIHRL+   EE+LY AMEDF
Sbjct: 79  IIAAEVDGSLRLTSGPAIQHAGDLAAILSSLEEGDVLFIDEIHRLARTAEEMLYLAMEDF 138

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           ++D++VG+GP A S+ ++L  FT++ ATTR GLL  PL+DRFG    L++Y   +L  I+
Sbjct: 139 RVDIVVGKGPGATSIPLSLPPFTVVGATTRAGLLPAPLRDRFGFTGHLDYYGPGELTRIL 198

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA-KTITREIADAALL 251
            R A L G+++  +AA E+A RSRGTPRIA RLLRRV+D+AEV      +  E A  AL 
Sbjct: 199 TRSAGLLGVSLEADAAKELASRSRGTPRIANRLLRRVQDWAEVHGRPGRLDLEAARGALD 258

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
              +D +G D+LD + L  +   FGGGPVG+ T++  + E  + +E + EPY++++G + 
Sbjct: 259 VFEVDALGLDRLDRQVLEALCTRFGGGPVGLTTLAVSVGEEPETVETVAEPYLVREGLVV 318

Query: 312 RTPRGRLLMPIAWQHLGIDIP 332
           RTPRGR   P A+ HLG++ P
Sbjct: 319 RTPRGRAATPAAYTHLGLEPP 339


>gi|78777875|ref|YP_394190.1| Holliday junction DNA helicase B [Sulfurimonas denitrificans DSM
           1251]
 gi|97190419|sp|Q30PX6|RUVB_SULDN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|78498415|gb|ABB44955.1| Holliday junction DNA helicase subunit RuvB [Sulfurimonas
           denitrificans DSM 1251]
          Length = 337

 Score =  333 bits (853), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 168/321 (52%), Positives = 227/321 (70%), Gaps = 1/321 (0%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
              E++    LRP    E+ GQ +   NL VFIEA+K RAEALDHVLF GPPGLGKTTLA
Sbjct: 10  FDSEESVEVTLRPSAWNEYIGQEQIKKNLGVFIEASKKRAEALDHVLFYGPPGLGKTTLA 69

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            ++A E+  N + T+ P+I K+GDLAA+LTNLE+ DVLFIDEIHRLS  VEEILY +MED
Sbjct: 70  LIIANEMNANIKVTAAPMIEKSGDLAAILTNLEEGDVLFIDEIHRLSPAVEEILYSSMED 129

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F++D+++G GP+A+++KI+L RFTLI ATTR G+L+NPL+DRFG+  R+ FY  E+L  I
Sbjct: 130 FRIDIIIGSGPAAQTLKIDLPRFTLIGATTRAGMLSNPLRDRFGMNFRMQFYSPEELSKI 189

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           + + +      + DEA  EIA RSRGTPRIA RLLRRVRDFA+VA+ K I    A  AL 
Sbjct: 190 ISQASNKLNKKIADEACSEIAKRSRGTPRIALRLLRRVRDFADVANEKDILHSRAQYALD 249

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L I+  GFD++D++ L ++     G  +G+ TI+A LSE    +ED++EPY+I  G+++
Sbjct: 250 ELGINSYGFDEMDIKLLNLLV-GANGRAMGLSTIAAALSEDEGTVEDVLEPYLIANGYLE 308

Query: 312 RTPRGRLLMPIAWQHLGIDIP 332
           RT +GR   P  ++ L + +P
Sbjct: 309 RTAKGRKATPSTYKILNVTMP 329


>gi|229817635|ref|ZP_04447917.1| hypothetical protein BIFANG_02905 [Bifidobacterium angulatum DSM
           20098]
 gi|229785424|gb|EEP21538.1| hypothetical protein BIFANG_02905 [Bifidobacterium angulatum DSM
           20098]
          Length = 353

 Score =  333 bits (853), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 161/323 (49%), Positives = 219/323 (67%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           S+ +  E      LRP  L+ F GQ +  + L++F++AA+ R    DH+L  GPPGLGKT
Sbjct: 22  SQPIGNEPVSDEELRPHVLDGFIGQPQLKAQLRLFLDAARKRETPPDHILLAGPPGLGKT 81

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           TLA +VA EL V  R TSGP I  AGDLA++L++LE  +VLF+DE+HRL    EE+LY A
Sbjct: 82  TLAMIVANELEVPIRITSGPAIQHAGDLASILSSLEPGEVLFVDEVHRLPRAAEELLYIA 141

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           MEDF++D+MVG+GP A S+ + L RFT+I ATTR G+L +PL+ RFG    L+FY  E+L
Sbjct: 142 MEDFRVDVMVGKGPGASSIPLTLPRFTMIGATTREGMLPSPLRARFGFTAHLDFYPHEEL 201

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           + +V+R A + GL +  EAA E+A+RSRGTPRIA RLLRRVRD+  V      + E    
Sbjct: 202 EKLVERSAGVLGLRIDREAAHELALRSRGTPRIANRLLRRVRDWVIVHDLPQASAEDVRQ 261

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL    ID  G D+LD+  L  I RNF GGPVG+ T++A + E  + +E + EPY++++G
Sbjct: 262 ALALYQIDAEGLDRLDIAVLNAIVRNFQGGPVGLNTLAAMVGEESETVETVCEPYLVREG 321

Query: 309 FIQRTPRGRLLMPIAWQHLGIDI 331
           F+ RTP+GR+  P AWQHLG+  
Sbjct: 322 FLIRTPKGRVATPKAWQHLGMRP 344


>gi|197121427|ref|YP_002133378.1| Holliday junction DNA helicase RuvB [Anaeromyxobacter sp. K]
 gi|220916124|ref|YP_002491428.1| Holliday junction DNA helicase RuvB [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|238689870|sp|B4UFY1|RUVB_ANASK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|254767404|sp|B8JF05|RUVB_ANAD2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|196171276|gb|ACG72249.1| Holliday junction DNA helicase RuvB [Anaeromyxobacter sp. K]
 gi|219953978|gb|ACL64362.1| Holliday junction DNA helicase RuvB [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 342

 Score =  332 bits (852), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 165/318 (51%), Positives = 222/318 (69%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E+     LRP T +++ GQV+   N+KV+  AA+ R E+LDHVL  GPPGLGKT+LA ++
Sbjct: 17  EERLEQSLRPATFDDYVGQVKIVDNVKVYAAAARQRGESLDHVLLSGPPGLGKTSLAHIL 76

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           ARELGV    TSGP + K GDLA LLT L  RD+LFIDEIHRLS  VEE LYPAMED++ 
Sbjct: 77  ARELGVTLHVTSGPALVKKGDLAGLLTALAPRDILFIDEIHRLSPAVEEALYPAMEDYRF 136

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D+++G G  A+++++ L RFTL+ ATTR GLL +PL+DRF I  RL +Y   +LK I  R
Sbjct: 137 DVVLGAGLGAQTMEMKLERFTLVGATTRTGLLASPLRDRFPIQERLEYYGPAELKEIAVR 196

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A+  GL V ++ A E+A R+RGTPRIA RLL+R RDFA+V     +TRE+ D  L RL 
Sbjct: 197 AARKLGLPVDEDGAEELARRARGTPRIAIRLLQRARDFAQVEGDGRLTREVVDRTLRRLE 256

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D  G D +D R L  +   FGGGPVGI+ ++A + E    +ED+ EP+++++G++ RTP
Sbjct: 257 VDARGLDAMDRRILAAVIDTFGGGPVGIDAVAAAVGEESGTLEDVYEPFLVREGYLARTP 316

Query: 315 RGRLLMPIAWQHLGIDIP 332
           RGR+ +P A+ HLG D P
Sbjct: 317 RGRVALPAAYAHLGRDRP 334


>gi|320534403|ref|ZP_08034886.1| Holliday junction DNA helicase RuvB [Actinomyces sp. oral taxon 171
           str. F0337]
 gi|320133378|gb|EFW25843.1| Holliday junction DNA helicase RuvB [Actinomyces sp. oral taxon 171
           str. F0337]
          Length = 346

 Score =  332 bits (852), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 160/332 (48%), Positives = 221/332 (66%), Gaps = 2/332 (0%)

Query: 3   DREGLLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           DR+ L+     + E A  + LRP+ LE+FTGQ      L V + +A AR    DHVL  G
Sbjct: 8   DRQRLVGGGADATERAAEAALRPKRLEDFTGQEVVRGQLSVVLRSALARGVTADHVLLSG 67

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+  + R TSGP I  AGDLAA+L++LE+ DVLFIDEIHRL+   
Sbjct: 68  PPGLGKTTLAMIIAAEVDGSLRLTSGPAIQHAGDLAAILSSLEEGDVLFIDEIHRLARTA 127

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMEDF++D++VG+GP A S+ ++L  FT++ ATTR GLL  PL+DRFG    L+
Sbjct: 128 EEMLYLAMEDFRVDIVVGKGPGATSIPLSLPPFTVVGATTRAGLLPAPLRDRFGFTGHLD 187

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA-KT 240
           +Y   +L  I+ R A L G+++  +AA E+A RSRGTPRIA RLLRRV+D+AEV      
Sbjct: 188 YYGPGELTRILTRSAGLLGVSLEADAAKELASRSRGTPRIANRLLRRVQDWAEVHGRPGR 247

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +    A  AL    +D +G D+LD + L  +   FGGGPVG+ T++  + E  + +E + 
Sbjct: 248 LDLTAARGALDVFEVDALGLDRLDRQVLEALCTRFGGGPVGLTTLAVSVGEEPETVETVA 307

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EPY++++G + RTPRGR   P A+ HLG++ P
Sbjct: 308 EPYLVREGLVVRTPRGRAATPAAYSHLGLEPP 339


>gi|68171607|ref|ZP_00544977.1| Holliday junction DNA helicase RuvB [Ehrlichia chaffeensis str.
           Sapulpa]
 gi|88657636|ref|YP_507140.1| Holliday junction DNA helicase B [Ehrlichia chaffeensis str.
           Arkansas]
 gi|123763771|sp|Q2GHE3|RUVB_EHRCR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|67998974|gb|EAM85655.1| Holliday junction DNA helicase RuvB [Ehrlichia chaffeensis str.
           Sapulpa]
 gi|88599093|gb|ABD44562.1| holliday junction DNA helicase RuvB [Ehrlichia chaffeensis str.
           Arkansas]
          Length = 329

 Score =  332 bits (852), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 184/323 (56%), Positives = 237/323 (73%), Gaps = 3/323 (0%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            +L      ED     +RP  L++F GQ    +NLK+FI AA  R E +DHVL  GPPGL
Sbjct: 3   NILQSTECLEDQQNVSMRPNLLDDFIGQSSVVNNLKIFINAAYTRKEPMDHVLLYGPPGL 62

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLA ++A+EL VNFRST+GP+++KAGDLAA+LTNL+ +D+LFIDEIHRL+  +EEIL
Sbjct: 63  GKTTLAHIIAKELKVNFRSTAGPLLSKAGDLAAILTNLQAKDILFIDEIHRLNRNIEEIL 122

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           Y AMEDF LD++VGEG  AR+++++L  FTL+ ATTR+GLL+NPL+DRFGIPI L FY  
Sbjct: 123 YSAMEDFCLDIIVGEGCGARTLRVDLPPFTLVGATTRIGLLSNPLRDRFGIPIHLEFYST 182

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV-AHAKTITRE 244
           E+L  ++QR AK+    +++  A EI++RSRGTPRIA RLLRR+RDF EV  H K IT  
Sbjct: 183 EELTKVIQRAAKVIKTNISNSGAQEISLRSRGTPRIALRLLRRIRDFMEVTEHNKIITDT 242

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
            AD ALLRL IDK+G D+ D++YL  I  +    P GI+TIS+GLSE    IE+ IEPY+
Sbjct: 243 FADKALLRLGIDKLGLDRQDIQYLKFIYDS--NNPTGIDTISSGLSEDTGNIEETIEPYL 300

Query: 305 IQQGFIQRTPRGRLLMPIAWQHL 327
           I+  FIQRTPRGR++   A  HL
Sbjct: 301 IKINFIQRTPRGRVITEKAISHL 323


>gi|329938964|ref|ZP_08288338.1| Holliday junction DNA helicase [Streptomyces griseoaurantiacus
           M045]
 gi|329301849|gb|EGG45742.1| Holliday junction DNA helicase [Streptomyces griseoaurantiacus
           M045]
          Length = 357

 Score =  332 bits (852), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 160/331 (48%), Positives = 221/331 (66%), Gaps = 1/331 (0%)

Query: 4   REGLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
            E L+     +ED A  + LRP+ L EF GQ +    L + + AA+AR    DHVL  G 
Sbjct: 13  EERLVGSVADREDQAVEAALRPKDLGEFIGQEKVREQLDLVLRAARARGATADHVLLSGA 72

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTL+ ++A E+G   R TSGP I  AGDLAA+L++L++ +VLF+DEIHR+S   E
Sbjct: 73  PGLGKTTLSMIIAAEMGAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAE 132

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LY AMEDF++D++VG+GP A ++ + L  FTL+ ATTR GLL  PL+DRFG    + F
Sbjct: 133 EMLYMAMEDFRVDVVVGKGPGATAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTAHMEF 192

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           YE  +L+ +V R A L  + +  + A EIA RSRGTPRIA RLLRRVRD+A+V     I 
Sbjct: 193 YEPTELERVVHRSASLLDVEIDTDGAAEIAGRSRGTPRIANRLLRRVRDYAQVKADGIID 252

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           R+IA AAL    +D  G D+LD   L  + + FGGGPVG+ T++  + E R+ +E++ EP
Sbjct: 253 RDIAAAALKVYEVDARGLDRLDRAVLQALLKLFGGGPVGLSTLAVAVGEERETVEEVAEP 312

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +++++G + RTPRGR+  P AW HLG+  P 
Sbjct: 313 FLVREGLLARTPRGRVATPAAWAHLGLTPPR 343


>gi|242310432|ref|ZP_04809587.1| holliday junction DNA helicase B [Helicobacter pullorum MIT
           98-5489]
 gi|239522830|gb|EEQ62696.1| holliday junction DNA helicase B [Helicobacter pullorum MIT
           98-5489]
          Length = 333

 Score =  332 bits (851), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 166/324 (51%), Positives = 229/324 (70%), Gaps = 2/324 (0%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M+R   + +   + D ++  LRP    ++ GQ +   NL+VFI AAK R + LDH+L  G
Sbjct: 1   MERIVEIEKIALEGDEEV-RLRPNNWSDYIGQEKLKKNLQVFINAAKKRNDTLDHILLFG 59

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA +++ E+    + T+ P+I KAGDLAA+LTNL + ++LFIDEIHRLS  +
Sbjct: 60  PPGLGKTTLAHIISGEMNAPIKVTAAPMIEKAGDLAAILTNLSEGEILFIDEIHRLSPAI 119

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILYPAMEDF+LD+++G GP+A++VKI+L RFTLI ATTR G+++NPL+DRFG+  R+ 
Sbjct: 120 EEILYPAMEDFRLDIIIGSGPAAQTVKIDLPRFTLIGATTRAGMISNPLRDRFGMQFRMQ 179

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FYE E+L  IVQ  A       + + A EIA RSRGTPRIA RLL+RVRDFAEVA    I
Sbjct: 180 FYEKEELARIVQIAAIKLQKECSSDGALEIAKRSRGTPRIALRLLKRVRDFAEVAEEGII 239

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T+E    AL  L +++ GFD+LDLR+L +I  +  G P+G+ T++A +SE    IED+IE
Sbjct: 240 TKERTQYALNELGVNEYGFDELDLRFLKIICES-RGRPIGLSTLAAAMSEDEGTIEDVIE 298

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQ 325
           PY++  GF++RT RGR+     ++
Sbjct: 299 PYLLINGFLERTARGRIATQKTYE 322


>gi|315655416|ref|ZP_07908316.1| crossover junction ATP-dependent DNA helicase RuvB [Mobiluncus
           curtisii ATCC 51333]
 gi|315490356|gb|EFU79981.1| crossover junction ATP-dependent DNA helicase RuvB [Mobiluncus
           curtisii ATCC 51333]
          Length = 345

 Score =  332 bits (851), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 159/330 (48%), Positives = 219/330 (66%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           ++  + S     E A  + LRP+TL +F GQ    + L++ + AAK R EA DHVL  GP
Sbjct: 10  EQRLVDSSAPDAERAAEAALRPKTLGDFIGQETVKTQLQLVLSAAKERGEAADHVLLAGP 69

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++A E+  + R TSGP I  AGDLAA+L++L++ DVLFIDEIHRL+   E
Sbjct: 70  PGLGKTTLAMIIAAEMSSSLRLTSGPAIGHAGDLAAILSSLQEGDVLFIDEIHRLARPAE 129

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LY AMEDF++D++VG+GP A S+ + L  FTL+ ATTR GLL  PL+DRFG    L  
Sbjct: 130 EMLYLAMEDFRVDVVVGKGPGATSIPLTLPPFTLVGATTRAGLLPAPLRDRFGFTAHLEP 189

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y+  DL  IV+R A L G  +T++AA E+A RSRGTPR+A RLLRRV DFA V       
Sbjct: 190 YQPPDLALIVKRSASLLGSEITEDAASEVARRSRGTPRVANRLLRRVIDFALVHGHPRCD 249

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            E A  AL    +D++G D+LD   L  +   F GGPVG+ T++  + E  + IE+++EP
Sbjct: 250 LESARRALELFEVDELGLDRLDRSVLRAVIERFAGGPVGLHTLAVSVGEEPETIEEVVEP 309

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           +++++G + RT RGR + P   +HLG+ +P
Sbjct: 310 FLVREGLLIRTNRGRAITPKGCEHLGVTLP 339


>gi|290961822|ref|YP_003493004.1| Holliday junction DNA helicase [Streptomyces scabiei 87.22]
 gi|260651348|emb|CBG74470.1| holliday junction DNA helicase [Streptomyces scabiei 87.22]
          Length = 356

 Score =  332 bits (851), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 160/330 (48%), Positives = 222/330 (67%), Gaps = 1/330 (0%)

Query: 5   EGLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E L+     +ED A  + LRP+ L EF GQ +    L + + AA+AR    DHVL  G P
Sbjct: 13  ERLVGSVADREDQAVEAALRPKDLGEFIGQEKVREQLDLVLRAARARGATADHVLLSGAP 72

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTL+ ++A E+G   R TSGP I  AGDLAA+L++L++ +VLF+DEIHR+S   EE
Sbjct: 73  GLGKTTLSMIIAAEMGAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEE 132

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LY AMEDF++D++VG+GP A ++ + L  FTL+ ATTR GLL  PL+DRFG    + FY
Sbjct: 133 MLYMAMEDFRVDVIVGKGPGATAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTAHMEFY 192

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           E  +L+ ++ R A L  + +  + A EIA RSRGTPRIA RLLRRVRD+A+V     ITR
Sbjct: 193 EPAELERVIHRSANLLDVEIDTDGAAEIAGRSRGTPRIANRLLRRVRDYAQVKADGFITR 252

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           +IA AAL    +D  G D+LD   L  + + FGGGPVG+ T++  + E R+ +E++ EP+
Sbjct: 253 DIAGAALAVYEVDARGLDRLDRGVLEALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPF 312

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           ++++G + RTPRGR+  P AW HLG+  P 
Sbjct: 313 LVREGLLARTPRGRVATPAAWAHLGLTPPR 342


>gi|119961075|ref|YP_948036.1| Holliday junction DNA helicase RuvB [Arthrobacter aurescens TC1]
 gi|171704630|sp|A1R724|RUVB_ARTAT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|119947934|gb|ABM06845.1| Holliday junction DNA helicase RuvB [Arthrobacter aurescens TC1]
          Length = 358

 Score =  332 bits (851), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 153/332 (46%), Positives = 211/332 (63%), Gaps = 1/332 (0%)

Query: 2   MDREGLLSR-NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M    L+S     +E    + LRP+ L +F GQ      L + +EA+K R  + DHVL  
Sbjct: 1   MAEPSLVSGGEEPEERVIEAALRPKNLHDFVGQHRVRKQLALVLEASKMRGRSADHVLMS 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A E+    R +SGP I  AGDLAA+L++L + +VLF+DEIHR+S  
Sbjct: 61  GPPGLGKTTLAMIIAAEMNAPLRISSGPAIQHAGDLAAILSSLSEGEVLFLDEIHRMSRP 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            EE+LY AMEDF++D++VG+G  A ++ + L  FTL+ ATTR GLL  PL+DRFG    L
Sbjct: 121 AEEMLYMAMEDFRVDIVVGKGAGATAIPLELPPFTLVGATTRAGLLPGPLRDRFGFTGHL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY + +L+ +++R A L  L V      EIA RSRGTPRIA RLLRRVRD+A V   + 
Sbjct: 181 EFYSVAELELVLRRSAGLLDLKVNSAGFTEIAGRSRGTPRIANRLLRRVRDWALVHGIEQ 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I    A AAL    +D+ G D+LD   L  +   F GGPVG+ T++  + E  + +E + 
Sbjct: 241 IDARSASAALDMYEVDERGLDRLDRSVLEALITKFNGGPVGLSTLAIAVGEEPETVETVA 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EP+++++G + RTPRGR+ M  AW HLG  +P
Sbjct: 301 EPFLVREGLLGRTPRGRIAMASAWTHLGYAVP 332


>gi|2498879|sp|Q56214|RUVB_THETH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|7144503|gb|AAB03726.2| RuvB Protein [Thermus thermophilus]
          Length = 324

 Score =  332 bits (851), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 171/313 (54%), Positives = 224/313 (71%), Gaps = 1/313 (0%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            LRP+TL+E+ GQ      L+V++EAAKAR E L+H+L  GPPGLGKTTLA V+A ELGV
Sbjct: 5   ALRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGV 64

Query: 81  NFRSTSGPVIAKAGDLAALLTN-LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
           N R TSGP I K GDLAA+L N LE+ D+LFIDEIHRLS   EE LYPAMEDF +D+++G
Sbjct: 65  NLRVTSGPAIEKPGDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIG 124

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199
           +GP+AR++++ L RF LI ATTR GL+T PL  RFGI   L +Y  E+L   V R A+L 
Sbjct: 125 QGPAARTIRLELPRFALIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLL 184

Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259
           G+ +T+EAA EI  RSRGT R+A RL RRVRDFA+V   + ITRE A  AL  L +D++G
Sbjct: 185 GVRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVEGEEVITRERALEALAALGLDELG 244

Query: 260 FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLL 319
            ++ D   L ++   FG GPVG+ T++  LSE    +E++ EPY+I+QG ++RTPRGR+ 
Sbjct: 245 LEKRDREILEVLILRFGAGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRTPRGRVA 304

Query: 320 MPIAWQHLGIDIP 332
             +A++HLG   P
Sbjct: 305 TELAYRHLGYPPP 317


>gi|194333365|ref|YP_002015225.1| Holliday junction DNA helicase RuvB [Prosthecochloris aestuarii DSM
           271]
 gi|238693320|sp|B4S5I1|RUVB_PROA2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|194311183|gb|ACF45578.1| Holliday junction DNA helicase RuvB [Prosthecochloris aestuarii DSM
           271]
          Length = 343

 Score =  332 bits (851), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 169/326 (51%), Positives = 225/326 (69%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M  E L +     E+     +RP  LE+F+GQ     NL++FI AA+ R EALDHVLF G
Sbjct: 1   MRDELLNTPTDPLEEKFEEQIRPSRLEDFSGQQRLTDNLRIFIAAARQRGEALDHVLFSG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A ELG   + TSGP++ K G+LA LLT+L+  DVLFIDEIHRL+  V
Sbjct: 61  PPGLGKTTLAHIIASELGGGLKITSGPLLDKPGNLAGLLTSLQKGDVLFIDEIHRLTPAV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE LY AMEDF++D+++  GPSARSV++ L  FTL+ ATTR GLLT+PL+ RFGI  RL+
Sbjct: 121 EEYLYSAMEDFRIDILLDSGPSARSVQLRLEPFTLVGATTRAGLLTSPLRARFGISNRLD 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y  E L+ I+ R A + G+A+  +AA EIA RSRGTPRIA RLL+R RDF +VA +  I
Sbjct: 181 YYSAELLQRIIIRTATILGIAIDQQAADEIARRSRGTPRIANRLLKRARDFTQVAQSSVI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           + E+A   L  L ID+ G D +D + +  + + F GGPVGI +++  + E  D IE++ E
Sbjct: 241 SLELARKTLAALEIDEDGLDDMDKKIILSLLQKFDGGPVGISSLAVSVGEEHDTIEEVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHL 327
           PY+IQ GFI RTPRGR+    A++  
Sbjct: 301 PYLIQTGFIARTPRGRVATKNAYRKF 326


>gi|314981357|gb|EFT25451.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL110PA3]
          Length = 342

 Score =  332 bits (851), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 153/323 (47%), Positives = 214/323 (66%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
                E A+ + LRP  L EF GQ      L + + A+K+R    DHVL  GPPGLGKTT
Sbjct: 11  SAEPPEKAEEAALRPGALAEFGGQQRVADQLGLVLAASKSRGTTPDHVLLSGPPGLGKTT 70

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           LA ++A E+    R +SGP I  AGDLAA+L++L   +V F+ EIHR+S   EE+LY AM
Sbjct: 71  LAMIIASEMSAPIRISSGPAIQHAGDLAAILSSLVPGEVFFLGEIHRMSKPAEEMLYLAM 130

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           EDF++D++VG+GP A ++ I +  FTL+ ATTR GLL  PL+DRFG   +L++YE+ DL+
Sbjct: 131 EDFRVDVVVGKGPGATAIPIEIPPFTLVGATTRAGLLPGPLRDRFGFTAQLDYYEVADLE 190

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            IV R A + G+ + + AA  IA RSRGTPRIA RLLRRVRD+A+V H   +T + A+ A
Sbjct: 191 RIVTRSAGVIGVELAEGAAHTIASRSRGTPRIANRLLRRVRDWADVHHESPVTPQGAETA 250

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           L    +D +G D+LD   L  +   FGGGPVG+ T++  + E    +E++ EP++++ GF
Sbjct: 251 LDLYEVDPLGLDRLDRAVLHAVCLKFGGGPVGLSTLAISVGEEPQTVEEVAEPFLVRLGF 310

Query: 310 IQRTPRGRLLMPIAWQHLGIDIP 332
           + RTPRGR+    AW+HLG++ P
Sbjct: 311 LMRTPRGRVATDRAWRHLGLEPP 333


>gi|149196354|ref|ZP_01873409.1| Holliday junction DNA helicase B [Lentisphaera araneosa HTCC2155]
 gi|149140615|gb|EDM29013.1| Holliday junction DNA helicase B [Lentisphaera araneosa HTCC2155]
          Length = 341

 Score =  332 bits (851), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 155/328 (47%), Positives = 216/328 (65%), Gaps = 1/328 (0%)

Query: 4   REGLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
            E      + +E   + ++LRP+T EEF GQ +    L +F+EAAK R EAL H +  GP
Sbjct: 2   SENFFESTLKKETGENDNILRPKTFEEFPGQDQVKERLSIFVEAAKMRDEALGHFILSGP 61

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA +VA E G   +++SGPV+ K GDLA LLT+L D D+LFIDEIHRL I +E
Sbjct: 62  PGLGKTTLAYIVANERGKGIKTSSGPVLEKPGDLAGLLTSLSDGDILFIDEIHRLPIAIE 121

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E LY AMEDF +D+M+ +G  ARSV++N+ +FTL+ ATTR+GL + PL+ R     RL +
Sbjct: 122 EYLYSAMEDFFIDIMIDQGVGARSVRLNIPKFTLVGATTRLGLCSAPLRSRCQHVHRLEY 181

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  E+L  IV+R + L    + ++A+ E+A RSRGTPRIA  LL  VRD+A+V     +T
Sbjct: 182 YSDEELGRIVKRSSDLINCEMDEKASHEVAGRSRGTPRIANNLLHWVRDYAQVKADGFVT 241

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            ++A+ AL  L ID  G D++D + L  IA NF  GPVGI+ I+  + E    +ED+ EP
Sbjct: 242 WDLANKALNMLNIDSNGLDEMDKKILNTIAYNFDCGPVGIKNIAVSVGEEVGTLEDVYEP 301

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           ++IQ+G++ RT  GR++       LGI+
Sbjct: 302 FLIQEGYLVRTQTGRVISQKTKNMLGIN 329


>gi|325971232|ref|YP_004247423.1| Holliday junction ATP-dependent DNA helicase ruvB [Spirochaeta sp.
           Buddy]
 gi|324026470|gb|ADY13229.1| Holliday junction ATP-dependent DNA helicase ruvB [Spirochaeta sp.
           Buddy]
          Length = 353

 Score =  332 bits (851), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 151/328 (46%), Positives = 217/328 (66%), Gaps = 1/328 (0%)

Query: 4   REGLLSRNVSQE-DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           +  ++S +  QE D   ++LRP+ L++F GQ     NL VF++AA+ R E LDH   +GP
Sbjct: 13  QSSVVSTSFQQEADKQENILRPKMLKDFQGQQRLKDNLAVFVQAARERKEPLDHTFLIGP 72

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++A E+G   R TS P + K  DLA +LTN+ +  V FIDEIHRL   +E
Sbjct: 73  PGLGKTTLASIIANEMGAEIRMTSAPALDKPKDLAGILTNVTEGSVFFIDEIHRLKPALE 132

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LY AMEDF++D ++G+GP+AR+++I L +FTL+ ATT+ G +++PL  RFGI   + F
Sbjct: 133 EMLYIAMEDFEIDWVIGQGPAARTMRIPLPKFTLVGATTKAGSVSSPLSSRFGITCHIEF 192

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  ++L +I+ R A++  + +  +A  ++A  SRGTPRIA RLLRR+RDFA V    T+T
Sbjct: 193 YNEQELASIIARSAQIMDVQIDKKAIVQLARCSRGTPRIANRLLRRLRDFAMVMGDGTVT 252

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             + D  + RL ID  G +  D   L  I   + GGPVG ET+S  + E  +++ED  EP
Sbjct: 253 VAVVDHGMERLGIDNNGLETQDRNILRTIIEFYDGGPVGAETLSISVGEAIESLEDFYEP 312

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           Y+IQ+GF++RTPRGR+    A+  LGI 
Sbjct: 313 YLIQKGFLKRTPRGRMTTKKAYDLLGIP 340


>gi|91203073|emb|CAJ72712.1| strongly similar to RuvB ATPase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 354

 Score =  332 bits (851), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 161/332 (48%), Positives = 226/332 (68%), Gaps = 5/332 (1%)

Query: 2   MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M  EG+LS + + ED+++ L LRP+   +F GQ     NL ++I+AAK R E +DHVLF 
Sbjct: 12  MLNEGVLSSSAAIEDSNLDLTLRPKRFNDFIGQDRIKENLHIYIKAAKKRGEPIDHVLFS 71

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTL+Q++A E     R+TSGP++ K  DLA +LTNL+  ++LFIDEIHRL+  
Sbjct: 72  GPPGLGKTTLSQIIASETNTAIRTTSGPILDKPADLAGILTNLQQGEILFIDEIHRLNTN 131

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE LY AMEDF +D+++ +G  ARSVKINL RFTLI ATTR GLLT PL+ RFG+  +L
Sbjct: 132 VEEYLYSAMEDFSIDIIIDQGQKARSVKINLQRFTLIGATTREGLLTAPLRSRFGVLEKL 191

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV---AH 237
            FY  EDL  IV   A+   + +  + A  IA RSRGTPRIA R LRR+RD A+V     
Sbjct: 192 EFYPWEDLYKIVCNSARKLAIPIEVKGAEAIAKRSRGTPRIANRFLRRIRDVAQVLGEDG 251

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
              I  +IA   L  L +D+ G  ++D + L  + ++ GGGP+G++TI+  ++E  D IE
Sbjct: 252 KDVIDEKIALRGLEMLGVDENGLCEMDRKILQTVVKS-GGGPIGLKTIAVSVNEQEDTIE 310

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           ++ E ++IQ+G++++TPRGR+     ++HLG+
Sbjct: 311 EVYESFLIQRGYLEKTPRGRIATKQTYEHLGV 342


>gi|297559815|ref|YP_003678789.1| Holliday junction DNA helicase RuvB [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296844263|gb|ADH66283.1| Holliday junction DNA helicase RuvB [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 382

 Score =  332 bits (851), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 152/328 (46%), Positives = 222/328 (67%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           +R+ +     + E      LRPR L+EF GQ      L + + +AK R  A DH+L  G 
Sbjct: 21  ERDAVSPDAGTDERQIEGALRPRALDEFVGQERVREQLSLVLHSAKRRNRAPDHILMSGG 80

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++A E+G   R TSGP I ++GDLAA+L+ L++ +VLF+DEIHR++   E
Sbjct: 81  PGLGKTTLAMIIAAEMGAPLRITSGPAIERSGDLAAVLSTLQEGEVLFLDEIHRMARPAE 140

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LY AMEDF++D++VG+GP A ++ ++++ FTL+ ATTR G+L  PL+DRFG    ++F
Sbjct: 141 EMLYVAMEDFRVDVVVGKGPGATAIPLDIAPFTLVGATTRAGMLPAPLRDRFGFTAHMDF 200

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  ++L+ I+QR A L G  +  +AA EIA RSRGTPRIA RLLRRVRD+AEV     ++
Sbjct: 201 YTPQELELILQRSAGLLGAPLDADAAVEIAGRSRGTPRIANRLLRRVRDYAEVRGNGRLS 260

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            + A AAL    +D++G D+LD   L ++ R F GGPVG+ T++  + E  + +E + EP
Sbjct: 261 LDTARAALDLYEVDELGMDRLDRAILDVLMRRFRGGPVGLSTLAVSVGEEAETVETVAEP 320

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           ++++ GF+ RTPRGR+  P AW H+G+ 
Sbjct: 321 FLVRSGFLARTPRGRVATPQAWAHMGLT 348


>gi|296454194|ref|YP_003661337.1| Holliday junction DNA helicase RuvB [Bifidobacterium longum subsp.
           longum JDM301]
 gi|296183625|gb|ADH00507.1| Holliday junction DNA helicase RuvB [Bifidobacterium longum subsp.
           longum JDM301]
          Length = 354

 Score =  332 bits (850), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 157/323 (48%), Positives = 216/323 (66%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           S+ +  E      LRP  LE F GQ    + L++F++AA+ R    DH+L  GPPGLGKT
Sbjct: 24  SQPIGNEPVSDEELRPHVLEGFIGQPRLKAQLQLFLDAARKRDVPPDHILLAGPPGLGKT 83

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           TLA +VA EL V  R TSGP +  AGDLA++L++L+  +VLFIDEIHRL    EE+LY A
Sbjct: 84  TLAMIVANELEVPIRVTSGPAVQHAGDLASILSSLDVGEVLFIDEIHRLPRAAEELLYIA 143

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           MEDF++D+MVG+GP A S+ + L RFT+I ATTR G+L +PL+ RFG    L+FY  E+L
Sbjct: 144 MEDFRVDVMVGKGPGASSIPLTLPRFTVIGATTREGMLPSPLRARFGFTAHLDFYPHEEL 203

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           + +++R A + G+ +   +A E+A+RSRGTPRIA RLLRRVRD+A V     +  +    
Sbjct: 204 EKLIERSANVLGVNLDAGSAHELALRSRGTPRIANRLLRRVRDWAIVHDLIVVRPDDVKE 263

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL    ID  G D+LD+  L  I RNF GGPVG+  ++A + E  + +E + EPY++++G
Sbjct: 264 ALALYQIDSEGLDRLDIAVLNAIVRNFNGGPVGLNNLAAMVGEESETVETVCEPYLVREG 323

Query: 309 FIQRTPRGRLLMPIAWQHLGIDI 331
           F+ RTP+GR+    AWQHLGI  
Sbjct: 324 FMIRTPKGRVATEKAWQHLGITP 346


>gi|189218507|ref|YP_001939148.1| Holliday junction resolvasome, helicase subunit RuvB
           [Methylacidiphilum infernorum V4]
 gi|189185365|gb|ACD82550.1| Holliday junction resolvasome, helicase subunit RuvB
           [Methylacidiphilum infernorum V4]
          Length = 350

 Score =  332 bits (850), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 148/320 (46%), Positives = 224/320 (70%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           S +      LRP+ L+EF GQ +    L + ++AAK + E L H+LF GPPGLGKTTLA 
Sbjct: 24  SADKFFEESLRPQKLDEFLGQEKIRERLYILVQAAKIKNEPLPHLLFSGPPGLGKTTLAH 83

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++++E+  + + TSGP + KA +LA +LT+LE  DVLFIDEIHRLS  VEE LYPAMEDF
Sbjct: 84  ILSKEMNASLKITSGPALDKAANLAGILTSLESFDVLFIDEIHRLSRPVEEYLYPAMEDF 143

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           ++D+++ +GP+ARS+++NL +FTL+ ATTRVGLLT PL+ RFG+  RL +Y++EDL  IV
Sbjct: 144 RMDILIDQGPNARSIRLNLPKFTLVGATTRVGLLTEPLRSRFGLINRLEYYKVEDLVRIV 203

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           QR A++  + V ++AA E+A R RGTPR    LLR +RD+A     + ++ ++ + AL  
Sbjct: 204 QRSARILEIEVNEQAAKEVAKRCRGTPRTVNHLLRWIRDYAYAKGYQKVSLDVVNKALEM 263

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           + ID+ G D++D + L  I   F GGPVG+++++  + E    +E++ EPY+I +G+++R
Sbjct: 264 IEIDEDGLDEMDKKILETIIYKFEGGPVGLQSLAVAVGEDPGTLEEVHEPYLILEGYLKR 323

Query: 313 TPRGRLLMPIAWQHLGIDIP 332
           TP+GR++   A++ L   +P
Sbjct: 324 TPQGRVVTARAYEKLKAVLP 343


>gi|50842640|ref|YP_055867.1| Holliday junction DNA helicase B [Propionibacterium acnes
           KPA171202]
 gi|68715438|sp|Q6A8K7|RUVB_PROAC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|50840242|gb|AAT82909.1| holliday junction DNA helicase RuvB [Propionibacterium acnes
           KPA171202]
 gi|315105679|gb|EFT77655.1| Holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL030PA1]
          Length = 342

 Score =  332 bits (850), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 154/323 (47%), Positives = 215/323 (66%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
                E A+ + LRP  L EF GQ      L + + A+K+R    DHVL  GPPGLGKTT
Sbjct: 11  SAEPPEKAEEAALRPGALAEFGGQQRVADQLGLVLAASKSRGTTPDHVLLSGPPGLGKTT 70

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           LA ++A E+    R +SGP I  AGDLAA+L++L   +V F+DEIHR+S   EE+LY AM
Sbjct: 71  LAMIIASEMSAPIRISSGPAIQHAGDLAAILSSLVPGEVFFLDEIHRMSKPAEEMLYLAM 130

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           EDF++D++VG+GP A ++ I +  FTL+ ATTR GLL  PL+DRFG   +L++YE+ DL+
Sbjct: 131 EDFRVDVVVGKGPGATAIPIEIPPFTLVGATTRAGLLPGPLRDRFGFTAQLDYYEVADLE 190

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            IV R A + G+ + + AA  IA RSRGTPRIA RLLRRVRD+A+V H   +T + A+ A
Sbjct: 191 RIVTRSAGVIGVELAEGAAHTIASRSRGTPRIANRLLRRVRDWADVHHESPVTPQGAETA 250

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           L    +D +G D+LD   L  +   FGGGPVG+ T++  + E    +E++ EP++++ GF
Sbjct: 251 LDLYEVDPLGLDRLDRAVLHAVCLKFGGGPVGLSTLAISVGEEPQTVEEVAEPFLVRLGF 310

Query: 310 IQRTPRGRLLMPIAWQHLGIDIP 332
           + RTPRGR+    AW+HLG++ P
Sbjct: 311 LMRTPRGRVPTDRAWRHLGLEPP 333


>gi|312132690|ref|YP_004000029.1| ruvb [Bifidobacterium longum subsp. longum BBMN68]
 gi|317483239|ref|ZP_07942234.1| Holliday junction DNA helicase RuvB [Bifidobacterium sp.
           12_1_47BFAA]
 gi|322689207|ref|YP_004208941.1| holliday junction DNA helicase RuvB [Bifidobacterium longum subsp.
           infantis 157F]
 gi|322691273|ref|YP_004220843.1| holliday junction DNA helicase RuvB [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|291516875|emb|CBK70491.1| Holliday junction DNA helicase subunit RuvB [Bifidobacterium longum
           subsp. longum F8]
 gi|311773648|gb|ADQ03136.1| RuvB [Bifidobacterium longum subsp. longum BBMN68]
 gi|316915308|gb|EFV36735.1| Holliday junction DNA helicase RuvB [Bifidobacterium sp.
           12_1_47BFAA]
 gi|320456129|dbj|BAJ66751.1| holliday junction DNA helicase RuvB [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320460543|dbj|BAJ71163.1| holliday junction DNA helicase RuvB [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 354

 Score =  332 bits (850), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 157/323 (48%), Positives = 216/323 (66%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           S+ +  E      LRP  LE F GQ    + L++F++AA+ R    DH+L  GPPGLGKT
Sbjct: 24  SQPIGNEPVSDEELRPHVLEGFIGQPRLKAQLQLFLDAARKRDVPPDHILLAGPPGLGKT 83

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           TLA +VA EL V  R TSGP +  AGDLA++L++L+  +VLFIDEIHRL    EE+LY A
Sbjct: 84  TLAMIVANELEVPIRVTSGPAVQHAGDLASILSSLDVGEVLFIDEIHRLPRAAEELLYIA 143

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           MEDF++D+MVG+GP A S+ + L RFT+I ATTR G+L +PL+ RFG    L+FY  E+L
Sbjct: 144 MEDFRVDVMVGKGPGASSIPLTLPRFTVIGATTREGMLPSPLRARFGFTAHLDFYPHEEL 203

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           + +++R A + G+ +   +A E+A+RSRGTPRIA RLLRRVRD+A V     +  +    
Sbjct: 204 EKLIERSANVLGVNLDAGSAHELALRSRGTPRIANRLLRRVRDWAIVHDLIVVRPDDVKE 263

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL    ID  G D+LD+  L  I RNF GGPVG+  ++A + E  + +E + EPY++++G
Sbjct: 264 ALALYQIDSEGLDRLDIAVLNAIVRNFNGGPVGLNNLAAMVGEESETVETVCEPYLVREG 323

Query: 309 FIQRTPRGRLLMPIAWQHLGIDI 331
           F+ RTP+GR+    AWQHLGI  
Sbjct: 324 FMIRTPKGRVATEKAWQHLGITP 346


>gi|225352126|ref|ZP_03743149.1| hypothetical protein BIFPSEUDO_03741 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157373|gb|EEG70712.1| hypothetical protein BIFPSEUDO_03741 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 362

 Score =  332 bits (850), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 158/332 (47%), Positives = 222/332 (66%), Gaps = 1/332 (0%)

Query: 3   DREGLLSRN-VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           +   ++S + V  E      LRP  L+ F GQ    + L++F++AA+ R    DH+L  G
Sbjct: 22  ESLRMVSASPVGNEPVSDEELRPHVLDGFIGQPRLKAQLQLFLDAARKRDVPPDHILLAG 81

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA +VA ELGV  R TSGP I  AGDLA++L++L+  +VLFIDEIHRL    
Sbjct: 82  PPGLGKTTLAMIVANELGVPIRVTSGPAIQHAGDLASILSSLDAGEVLFIDEIHRLPRAA 141

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMEDF++D+MVG+GP A S+ + L RFT+I ATTR G+L +PL+ RFG    L+
Sbjct: 142 EELLYIAMEDFRVDVMVGKGPGASSIPLTLPRFTVIGATTREGMLPSPLRARFGFTAHLD 201

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY  E+L+ +++R + + G+++ + AA ++AMRSRGTPRIA RLLRRVRD+A V   +T+
Sbjct: 202 FYPHEELEKLIERSSSVLGISLEEGAAHQLAMRSRGTPRIANRLLRRVRDWAIVHDLETV 261

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
             +    AL    ID  G D+LD+  L  I  NF GGPVG+  +SA + E  + +E + E
Sbjct: 262 HPDDVKEALALYQIDTEGLDRLDIAVLKAIVTNFNGGPVGLNNLSAMVGEESETVETVCE 321

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           PY++++GF+ RTP+GR+    AW HLG+    
Sbjct: 322 PYLVREGFLVRTPKGRVATRKAWDHLGLTSDE 353


>gi|56416489|ref|YP_153563.1| Holliday junction DNA helicase B [Anaplasma marginale str. St.
           Maries]
 gi|81821306|sp|Q5PBM1|RUVB_ANAMM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|56387721|gb|AAV86308.1| holliday junction DNA helicase [Anaplasma marginale str. St.
           Maries]
          Length = 331

 Score =  332 bits (850), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 180/327 (55%), Positives = 233/327 (71%), Gaps = 3/327 (0%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M  + L       ED     LRP  +EEF GQ E   NLKVFI++A  R E +DHVL  G
Sbjct: 1   MSSDTLHKYEALPEDHRNVALRPCLIEEFVGQTEVIKNLKVFIQSAYERREPMDHVLLYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A+EL VNFRST+GP+++KAGDLAA+LTNL+  DVLFIDEIHRL+  +
Sbjct: 61  PPGLGKTTLAHIIAKELKVNFRSTAGPLLSKAGDLAAILTNLQPMDVLFIDEIHRLNRNI 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMED+ LD++VGEG  AR++KI++  FTLI ATTR GL++NPL+DRFGIP+ L 
Sbjct: 121 EEVLYSAMEDYCLDIVVGEGCGARTLKIDIPAFTLIGATTRFGLISNPLRDRFGIPLHLE 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE-VAHAKT 240
           FY +++L  +++R A +   ++ D  A EIA RSRGTPRIA RL RRVRDF E      T
Sbjct: 181 FYSVDELVLVIKRAAGVICTSIDDSGAREIASRSRGTPRIALRLFRRVRDFLEFERKHGT 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I    A++AL RL ID  GFD++DL+YL  +      GPVGI+TI++ LSE    IE+ I
Sbjct: 241 IDGNFANSALFRLGIDGAGFDKMDLKYLKFVFE--AKGPVGIDTIASALSEDVGNIEETI 298

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHL 327
           EPY+I+  FIQRTPRGR+L    +++L
Sbjct: 299 EPYLIKTCFIQRTPRGRVLTQKGFEYL 325


>gi|325963418|ref|YP_004241324.1| Holliday junction DNA helicase subunit RuvB [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323469505|gb|ADX73190.1| Holliday junction DNA helicase subunit RuvB [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 362

 Score =  332 bits (850), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 155/332 (46%), Positives = 215/332 (64%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M +   + +    +E A  + LRP+ L++F GQ      L + ++A++ R  + DHVLF 
Sbjct: 1   MAEPSLVAAGEEPEERAIEAALRPKNLDDFVGQHRVRKQLSLVLKASRMRGRSADHVLFS 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA +VA E+    R +SGP I  AGDLAA+L++L + +VLF+DEIHR+S  
Sbjct: 61  GPPGLGKTTLAMIVAAEMNAPLRISSGPAIQHAGDLAAILSSLSEGEVLFLDEIHRMSRP 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            EE+LY AMEDF++D++VG+G  A ++ + L  FTL+ ATTR GLL  PL+DRFG    L
Sbjct: 121 AEEMLYMAMEDFRVDIVVGKGAGATAIPLELPPFTLVGATTRAGLLPGPLRDRFGFTGHL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY + +L+ +++R A L  L V      EIA RSRGTPRIA RLLRRVRD+A V   + 
Sbjct: 181 EFYSVPELELVLRRSAGLLDLKVNSAGFTEIAGRSRGTPRIANRLLRRVRDWALVHDIEQ 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I    A AAL    +DK G D+LD   L  +   FGGGPVG+ T++  + E  + +E + 
Sbjct: 241 IDARAASAALDMYEVDKKGLDRLDRAVLEALITKFGGGPVGLATLAIAVGEETETVETVA 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           EP+++++G + RTPRGR+ M  AW HLG  IP
Sbjct: 301 EPFLVREGLLGRTPRGRIAMAPAWTHLGYSIP 332


>gi|111221575|ref|YP_712369.1| Holliday junction DNA helicase RuvB [Frankia alni ACN14a]
 gi|123143325|sp|Q0RNU6|RUVB_FRAAA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|111149107|emb|CAJ60790.1| Holliday junction helicase, subunit B [Frankia alni ACN14a]
          Length = 366

 Score =  332 bits (850), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 154/310 (49%), Positives = 218/310 (70%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPRTL EF GQ +    L + +E A+AR    DHVL  GPPGLGKT+LA ++A EL V 
Sbjct: 22  LRPRTLTEFVGQRKVREQLSIMLEGAQARGRPPDHVLLSGPPGLGKTSLAMIIAEELAVP 81

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TSGP I +AGDL A+LT L   +VLF+DEIHR++   EE+LY AMEDF++D+++G+G
Sbjct: 82  LRMTSGPAIERAGDLVAILTALSPGEVLFLDEIHRIARPAEELLYAAMEDFRVDVILGKG 141

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P A ++ ++++ FTL+ ATTR GLLT PL+DRFG    L+FY  ++L  ++ R A L G+
Sbjct: 142 PGATAIPLDVAPFTLVGATTRSGLLTGPLRDRFGFTAHLDFYAPDELARVLTRSAGLLGV 201

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
           ++T++ A E+A RSRGTPRIA RLLRRVRD+AEV     +TR++A AAL    +D +G D
Sbjct: 202 SLTEDGAAEVAGRSRGTPRIANRLLRRVRDYAEVRADGVVTRDVARAALRIYDVDGLGLD 261

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           +LD   L  +   FGGGPVG+ T++  + E  + +ED+ EP++++ G + RT RGR+  P
Sbjct: 262 RLDRAVLEALVGRFGGGPVGLTTLAVSVGEEPETVEDVAEPFLLRAGLLIRTSRGRIATP 321

Query: 322 IAWQHLGIDI 331
            A++HLG++ 
Sbjct: 322 AAFEHLGLEP 331


>gi|222474858|ref|YP_002563273.1| Holliday junction DNA helicase (ruvB) [Anaplasma marginale str.
           Florida]
 gi|254994713|ref|ZP_05276903.1| Holliday junction DNA helicase RuvB [Anaplasma marginale str.
           Mississippi]
 gi|255002827|ref|ZP_05277791.1| Holliday junction DNA helicase RuvB [Anaplasma marginale str.
           Puerto Rico]
 gi|255003959|ref|ZP_05278760.1| Holliday junction DNA helicase RuvB [Anaplasma marginale str.
           Virginia]
 gi|269959098|ref|YP_003328887.1| Holliday junction DNA helicase B [Anaplasma centrale str. Israel]
 gi|254767405|sp|B9KHQ5|RUVB_ANAMF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|222418994|gb|ACM49017.1| Holliday junction DNA helicase (ruvB) [Anaplasma marginale str.
           Florida]
 gi|269848929|gb|ACZ49573.1| Holliday junction DNA helicase B [Anaplasma centrale str. Israel]
          Length = 331

 Score =  331 bits (849), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 180/327 (55%), Positives = 233/327 (71%), Gaps = 3/327 (0%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M  + L       ED     LRP  +EEF GQ E   NLKVFI++A  R E +DHVL  G
Sbjct: 1   MSNDTLHKYEALPEDHRNVALRPCLIEEFVGQTEVIKNLKVFIQSAYERREPMDHVLLYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A+EL VNFRST+GP+++KAGDLAA+LTNL+  DVLFIDEIHRL+  +
Sbjct: 61  PPGLGKTTLAHIIAKELKVNFRSTAGPLLSKAGDLAAILTNLQPMDVLFIDEIHRLNRNI 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMED+ LD++VGEG  AR++KI++  FTLI ATTR GL++NPL+DRFGIP+ L 
Sbjct: 121 EEVLYSAMEDYCLDIVVGEGCGARTLKIDIPAFTLIGATTRFGLISNPLRDRFGIPLHLE 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE-VAHAKT 240
           FY +++L  +++R A +   ++ D  A EIA RSRGTPRIA RL RRVRDF E      T
Sbjct: 181 FYSVDELVLVIKRAAGVICTSIDDSGAREIASRSRGTPRIALRLFRRVRDFLEFERKHGT 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I    A++AL RL ID  GFD++DL+YL  +      GPVGI+TI++ LSE    IE+ I
Sbjct: 241 IDGNFANSALFRLGIDGAGFDKMDLKYLKFVFE--AKGPVGIDTIASALSEDVGNIEETI 298

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHL 327
           EPY+I+  FIQRTPRGR+L    +++L
Sbjct: 299 EPYLIKTCFIQRTPRGRVLTQKGFEYL 325


>gi|21220018|ref|NP_625797.1| Holliday junction DNA helicase RuvB [Streptomyces coelicolor A3(2)]
 gi|256788882|ref|ZP_05527313.1| Holliday junction DNA helicase RuvB [Streptomyces lividans TK24]
 gi|289772770|ref|ZP_06532148.1| Holliday junction DNA helicase RuvB [Streptomyces lividans TK24]
 gi|20140294|sp|Q9L291|RUVB_STRCO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|6822214|emb|CAB70920.1| holliday junction DNA helicase [Streptomyces coelicolor A3(2)]
 gi|289702969|gb|EFD70398.1| Holliday junction DNA helicase RuvB [Streptomyces lividans TK24]
          Length = 357

 Score =  331 bits (849), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 158/330 (47%), Positives = 218/330 (66%), Gaps = 1/330 (0%)

Query: 5   EGLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E L+      ED A  + LRP+ L EF GQ +    L + + AA+AR    DHVL  G P
Sbjct: 14  ERLVGAAADGEDQAVEAALRPKDLGEFIGQEKVREQLDLVLRAARARGATADHVLLSGAP 73

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTL+ ++A E+    R TSGP I  AGDLAA+L++L++ +VLF+DEIHR+S   EE
Sbjct: 74  GLGKTTLSMIIAAEMEAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEE 133

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LY AMEDF++D++VG+GP A ++ + L  FTL+ ATTR GLL  PL+DRFG    + FY
Sbjct: 134 MLYMAMEDFRVDVIVGKGPGATAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTAHMEFY 193

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
              +L+ ++ R A L  + +    A EIA RSRGTPRIA RLLRRVRD+A+V     IT+
Sbjct: 194 GPAELERVIHRSAGLLDVEIDPTGAAEIAGRSRGTPRIANRLLRRVRDYAQVKADGLITQ 253

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           EIA AAL    +D  G D+LD   L  + + FGGGPVG+ T++  + E R+ +E++ EP+
Sbjct: 254 EIAAAALAVYEVDARGLDRLDRGVLEALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPF 313

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           ++++G + RTPRGR+  P AW HLG+  P 
Sbjct: 314 LVREGLLARTPRGRVATPAAWAHLGLTPPR 343


>gi|329945620|ref|ZP_08293353.1| Holliday junction DNA helicase RuvB [Actinomyces sp. oral taxon 170
           str. F0386]
 gi|328528623|gb|EGF55588.1| Holliday junction DNA helicase RuvB [Actinomyces sp. oral taxon 170
           str. F0386]
          Length = 346

 Score =  331 bits (849), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 159/330 (48%), Positives = 220/330 (66%), Gaps = 2/330 (0%)

Query: 5   EGLLSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E L+     + E A  + LRP+ LE+FTGQ      L V + +A AR    DHVL  GPP
Sbjct: 10  ERLVGGEADATERAAEAALRPKRLEDFTGQEVVRGQLSVVLRSALARGVTADHVLLSGPP 69

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++A E+  + R TSGP I  AGDLAA+L++LE+ DVLFIDEIHRL+   EE
Sbjct: 70  GLGKTTLAMIIAAEVEGSLRLTSGPAIQHAGDLAAILSSLEEGDVLFIDEIHRLARTAEE 129

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LY AMEDF++D++VG+GP A S+ ++L  FT++ ATTR GLL  PL+DRFG    L++Y
Sbjct: 130 MLYLAMEDFRVDIVVGKGPGATSIPLSLPPFTVVGATTRAGLLPAPLRDRFGFTGHLDYY 189

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA-KTIT 242
              +L  I+ R A L G+++  +AA E+A RSRGTPRIA RLLRRV+D+AEV      + 
Sbjct: 190 GPGELTRILTRSAGLLGVSLDADAARELASRSRGTPRIANRLLRRVQDWAEVHGRPGRLD 249

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
              A +AL    +D +G D+LD + L  +   FGGGPVG+ T++  + E  + +E + EP
Sbjct: 250 LTAARSALDIFEVDALGLDRLDRQVLEALCTRFGGGPVGLTTLAVSVGEEPETVETVAEP 309

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           Y++++G + RTPRGR   P A+ HLG++ P
Sbjct: 310 YLVREGLVVRTPRGRAATPAAYSHLGLEPP 339


>gi|284991599|ref|YP_003410153.1| Holliday junction DNA helicase RuvB [Geodermatophilus obscurus DSM
           43160]
 gi|284064844|gb|ADB75782.1| Holliday junction DNA helicase RuvB [Geodermatophilus obscurus DSM
           43160]
          Length = 366

 Score =  331 bits (849), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 154/333 (46%), Positives = 219/333 (65%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           +     + +    +E    S LRP +L +F GQ +    L++ +E AK R    DHVL  
Sbjct: 9   LTRDFSVSAAAGDEERVVESALRPHSLTDFIGQPKVARQLELVLEGAKRRGRPPDHVLLS 68

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKT+LA ++  ELG   + TSGP I ++GDLAA+L+NL   DVLFIDEIHR++  
Sbjct: 69  GPPGLGKTSLALIIGSELGTAVKITSGPAIERSGDLAAMLSNLAPGDVLFIDEIHRIARP 128

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            EE+LY AMEDF++D++VG+GP A ++ + ++ FTL+ ATTR GLLT PL+DRFG   ++
Sbjct: 129 AEELLYMAMEDFRVDVVVGKGPGATAIPLEINPFTLVGATTRAGLLTGPLRDRFGFVGQM 188

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FYE  +L+ ++ R A L G+ +T + + EIA RSRGTPRIA RLLRRVRD+AEV     
Sbjct: 189 EFYEPAELQLVLARSAALLGVELTADGSAEIAGRSRGTPRIANRLLRRVRDYAEVRADGR 248

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +TR +A+AAL    +D +G D+LD   L  +   F GGPVG+ T++  + E    +E++ 
Sbjct: 249 VTRAVAEAALALYDVDHLGLDRLDRAVLEALVMRFSGGPVGVATLAVAVGEEPHTVEEVC 308

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EP++++ G + RTPRGR+    AW HLG  +P 
Sbjct: 309 EPFLVRAGLLARTPRGRVATEAAWHHLGQPVPR 341


>gi|327330391|gb|EGE72140.1| holliday junction DNA helicase RuvB [Propionibacterium acnes
           HL097PA1]
          Length = 342

 Score =  331 bits (849), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 153/323 (47%), Positives = 214/323 (66%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
                E A+ + LRP  L EF GQ      L + + A+K+R    DHVL  GPPGLGKTT
Sbjct: 11  SAEPPEKAEEAALRPGALAEFGGQQRVADQLGLVLAASKSRGTTPDHVLLSGPPGLGKTT 70

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           LA ++A E+    R +SGP I  AGDLAA+L++L   +V F+DEIHR+S   EE+LY AM
Sbjct: 71  LAMIIASEMSAPIRISSGPAIQHAGDLAAILSSLVPGEVFFLDEIHRMSKPAEEMLYLAM 130

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           EDF++D++VG+GP A ++ I +  FTL+ ATTR GLL  PL+DRFG   +L++YE+ DL+
Sbjct: 131 EDFRVDVVVGKGPGATAIPIEIPPFTLVGATTRAGLLPGPLRDRFGFTAQLDYYEVADLE 190

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            IV R A + G+ + + AA  IA RSRGTPRIA RLLRRVRD+A+V H   +T + A+ A
Sbjct: 191 RIVTRSAGVIGVELAEGAAHTIASRSRGTPRIANRLLRRVRDWADVHHESPVTPQGAETA 250

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           L    +D +G D+LD   L  +   FGGGPVG+ T++  + E    +E++ EP++++ GF
Sbjct: 251 LDLYEVDPLGLDRLDRAVLHAVCLKFGGGPVGLSTLAISVGEEPQTVEEVAEPFLVRLGF 310

Query: 310 IQRTPRGRLLMPIAWQHLGIDIP 332
           + RTPRGR+    AW+HL ++ P
Sbjct: 311 LMRTPRGRVATDRAWRHLDLEPP 333


>gi|253827554|ref|ZP_04870439.1| Holliday junction DNA helicase RuvB [Helicobacter canadensis MIT
           98-5491]
 gi|253510960|gb|EES89619.1| Holliday junction DNA helicase RuvB [Helicobacter canadensis MIT
           98-5491]
          Length = 324

 Score =  331 bits (849), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 165/311 (53%), Positives = 226/311 (72%), Gaps = 1/311 (0%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E  +   LRP   +++ GQ +   NLKVFIEAAK R + LDH+L  GPPGLGKTTLA ++
Sbjct: 4   EGDEEVKLRPSDWDDYIGQEKLKRNLKVFIEAAKKRGDVLDHLLLFGPPGLGKTTLAHII 63

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           + E+    + T+ P+I KAGDLAA+LTNL + ++LFIDEIHRLS  +EEILYPAMEDF+L
Sbjct: 64  SGEMNAPIKVTAAPMIEKAGDLAAILTNLSEGEILFIDEIHRLSPAIEEILYPAMEDFRL 123

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D+++G GP+A++VKI+L RFTLI ATTR G+++NPL+DRFG+  R+ FYE E+L  IVQ 
Sbjct: 124 DIIIGSGPAAQTVKIDLPRFTLIGATTRAGMISNPLRDRFGMQFRMQFYEKEELARIVQI 183

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            +       ++E A EIA RSRGTPRIA RLL+RVRDFAEVA  + IT+E    AL  L 
Sbjct: 184 ASIKLQKECSNEGALEIAKRSRGTPRIALRLLKRVRDFAEVAEEEIITKERTQYALNELG 243

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +++ GFD+LDLR+L +I  +  G P+G+ T++A +SE    +ED+IEPY++  GF++RT 
Sbjct: 244 VNEYGFDELDLRFLKIICES-RGRPIGLSTLAAAMSEDEGTVEDVIEPYLLVNGFLERTA 302

Query: 315 RGRLLMPIAWQ 325
           RGR+     ++
Sbjct: 303 RGRIATQKTYE 313


>gi|256371995|ref|YP_003109819.1| Holliday junction DNA helicase RuvB [Acidimicrobium ferrooxidans
           DSM 10331]
 gi|256008579|gb|ACU54146.1| Holliday junction DNA helicase RuvB [Acidimicrobium ferrooxidans
           DSM 10331]
          Length = 351

 Score =  331 bits (848), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 164/318 (51%), Positives = 224/318 (70%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E A    LRP  L +F GQ E  + L+V +EAA+ R E  DH+LF GPPGLGKT+LA ++
Sbjct: 25  ERALEQSLRPERLADFIGQRELKAQLEVLLEAARGRGETPDHLLFAGPPGLGKTSLAFII 84

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           ARELG   R TSGP + + GDLA+LL +L   +VLFIDEIHRL   VEE+LY AMEDF++
Sbjct: 85  ARELGTGVRVTSGPALQRIGDLASLLADLHGGEVLFIDEIHRLPRAVEELLYGAMEDFRV 144

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           DL++G+GP ARSV++++ RFTL+ ATTRVGL++ PL+DRFG   RL++Y  ++L  +V+R
Sbjct: 145 DLVLGKGPGARSVRLDVPRFTLVGATTRVGLISAPLRDRFGYHYRLDYYGDDELVAVVER 204

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A+   + +  +AA EIA RSRGTPR+A RLLRRVRD+AEV     I RE+A  AL    
Sbjct: 205 AARTLSVPIEPDAALEIARRSRGTPRLANRLLRRVRDYAEVRGDGAIDRELALEALDLFG 264

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D +G D++DL  L ++   F G PVG+ T++  + E    +E++ EP++IQ+G I RTP
Sbjct: 265 VDVLGLDRVDLEILRVLCVQFPGRPVGLSTLAVAVRENAGTLEEVYEPFLIQRGLIVRTP 324

Query: 315 RGRLLMPIAWQHLGIDIP 332
           RGR+  P A+ HLG+D P
Sbjct: 325 RGRMPTPRAYVHLGLDAP 342


>gi|118474580|ref|YP_891667.1| Holliday junction DNA helicase RuvB [Campylobacter fetus subsp.
           fetus 82-40]
 gi|166231477|sp|A0RN84|RUVB_CAMFF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|28974219|gb|AAO64220.1| putative Holliday junction DNA helicase [Campylobacter fetus]
 gi|118413806|gb|ABK82226.1| holliday junction DNA helicase RuvB [Campylobacter fetus subsp.
           fetus 82-40]
          Length = 343

 Score =  331 bits (848), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 172/331 (51%), Positives = 238/331 (71%), Gaps = 3/331 (0%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MDR   + + VS E      LRP T EE+ GQ +  SNLKVFI+AAK R E+LDHVLF G
Sbjct: 1   MDRIVEIEK-VSFESEYEVTLRPLTFEEYIGQEKIKSNLKVFIKAAKKRLESLDHVLFYG 59

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+G N + +S P+I K+GDLAA+LTNLE+ DVLFIDEIHRLS  +
Sbjct: 60  PPGLGKTTLAHIIANEMGANIKISSAPMIEKSGDLAAILTNLEEGDVLFIDEIHRLSPAI 119

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMEDF+LD+++G GP+A+++KI++ +FTLI ATTR G+++ PL+DRFG+  RL 
Sbjct: 120 EEVLYSAMEDFRLDIIIGSGPAAQTIKIDIPKFTLIGATTRAGMISAPLRDRFGMQFRLQ 179

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY   +L  I+   A   G   T EA+ EIA RSRGTPRIA RLL+R+RDFAEV+   +I
Sbjct: 180 FYTDNELARIISIAASKLGKNSTKEASLEIAKRSRGTPRIALRLLKRIRDFAEVSDENSI 239

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           +++ A ++L  L ++ +GFD++DL+YL ++        +G+ TI+A LSE    +ED+IE
Sbjct: 240 SKDRAKSSLDSLGVNDLGFDEMDLKYLDILV--GSKRALGLSTIAAALSEDEGTVEDVIE 297

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           PY++  G+I+RT +GR+L   ++   GI  P
Sbjct: 298 PYLLSNGYIERTAKGRILSFKSYSVFGITPP 328


>gi|297621195|ref|YP_003709332.1| Holliday junction ATP-dependent DNA helicase ruvB [Waddlia
           chondrophila WSU 86-1044]
 gi|297376496|gb|ADI38326.1| Holliday junction ATP-dependent DNA helicase ruvB [Waddlia
           chondrophila WSU 86-1044]
          Length = 332

 Score =  331 bits (848), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 154/318 (48%), Positives = 211/318 (66%), Gaps = 1/318 (0%)

Query: 7   LLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            +   +++ED    + LRP++L +F GQ      L+V I AAK R + L H LF GPPGL
Sbjct: 4   FIESTLTEEDKTFEVPLRPQSLSDFQGQDLVRERLEVLITAAKQRGDPLTHCLFTGPPGL 63

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLA ++A+ +G N   TSGP+I K GDLA +LTNL   D LFIDE+HRL+  VEE L
Sbjct: 64  GKTTLANILAKSMGTNLVVTSGPMIEKPGDLAGILTNLHCGDFLFIDELHRLNRSVEEYL 123

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           Y AMEDF LDLM+  GP+ARSV++ L+ F+L+ ATTR GLLT PL+ RFG   RL++Y  
Sbjct: 124 YSAMEDFTLDLMIDTGPNARSVQVKLNPFSLVGATTRTGLLTAPLRSRFGFTCRLDYYTP 183

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           + L+ IV R A +   +++ E A EIA RSRGTPRIA  LL+ VRDF++V +      ++
Sbjct: 184 QVLEKIVLRAASIINFSLSAEEAYEIARRSRGTPRIANNLLKWVRDFSQVRNGGKTNLDL 243

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
              AL  L ID+ G D++D++ L ++   + GGPVGI TI+  + E +  +E++ EPY+I
Sbjct: 244 VVQALDMLHIDEQGLDEMDIKILEVMLEQYNGGPVGISTIAVAVGEEKHTLEEVYEPYLI 303

Query: 306 QQGFIQRTPRGRLLMPIA 323
             GFI+RT RGR L  + 
Sbjct: 304 LLGFIKRTLRGRELTQLG 321


>gi|325068880|ref|ZP_08127553.1| Holliday junction DNA helicase RuvB [Actinomyces oris K20]
          Length = 346

 Score =  331 bits (848), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 157/321 (48%), Positives = 216/321 (67%), Gaps = 1/321 (0%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           + E A  + LRP+ LE+FTGQ      L V + +A AR    DHVL  GPPGLGKTTLA 
Sbjct: 19  ATERAAEAALRPKRLEDFTGQEVVRGQLSVVLRSALARGVTADHVLLSGPPGLGKTTLAM 78

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++A E+  + R TSGP I  AGDLAA+L++LE+ DVLFIDEIHRL+   EE+LY AMEDF
Sbjct: 79  IIAAEVDGSLRLTSGPAIQHAGDLAAILSSLEEGDVLFIDEIHRLARTAEEMLYLAMEDF 138

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           ++D++VG+GP A S+ ++L  FT++ ATTR GLL  PL+DRFG    L++Y   +L  I+
Sbjct: 139 RVDIVVGKGPGATSIPLSLPPFTVVGATTRAGLLPAPLRDRFGFTGHLDYYGPSELTRIL 198

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA-KTITREIADAALL 251
            R A L G+++  +AA E+A RSRGTPRIA RLLRRV+D+AEV      +    A  AL 
Sbjct: 199 TRSAGLLGVSLEADAAKELASRSRGTPRIANRLLRRVQDWAEVHGRPGRLDLTAARGALD 258

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
              +D +G D+LD + L  +   FGGGPVG+ T++  + E  + +E + EPY++++G + 
Sbjct: 259 VFEVDALGLDRLDRQVLEALCTRFGGGPVGLTTLAVSVGEEPETVETVAEPYLVREGLVV 318

Query: 312 RTPRGRLLMPIAWQHLGIDIP 332
           RTPRGR   P A+ HLG++ P
Sbjct: 319 RTPRGRAATPAAYGHLGLEPP 339


>gi|298346871|ref|YP_003719558.1| crossover junction endoribonuclease subunit B [Mobiluncus curtisii
           ATCC 43063]
 gi|304389424|ref|ZP_07371387.1| crossover junction ATP-dependent DNA helicase RuvB [Mobiluncus
           curtisii subsp. curtisii ATCC 35241]
 gi|315656671|ref|ZP_07909558.1| crossover junction ATP-dependent DNA helicase RuvB [Mobiluncus
           curtisii subsp. holmesii ATCC 35242]
 gi|298236932|gb|ADI68064.1| crossover junction endoribonuclease subunit B [Mobiluncus curtisii
           ATCC 43063]
 gi|304327234|gb|EFL94469.1| crossover junction ATP-dependent DNA helicase RuvB [Mobiluncus
           curtisii subsp. curtisii ATCC 35241]
 gi|315492626|gb|EFU82230.1| crossover junction ATP-dependent DNA helicase RuvB [Mobiluncus
           curtisii subsp. holmesii ATCC 35242]
          Length = 345

 Score =  331 bits (848), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 161/331 (48%), Positives = 218/331 (65%), Gaps = 1/331 (0%)

Query: 3   DREGLL-SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
             + L+ S     E A  + LRP+TL +F GQ    + L++ + AAK R EA DHVL  G
Sbjct: 9   HEQRLVDSSAPDAERAAEAALRPKTLGDFIGQETVKTQLQLVLSAAKERGEAADHVLLAG 68

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+  + R TSGP I  AGDLAA+L++L++ DVLFIDEIHRL+   
Sbjct: 69  PPGLGKTTLAMIIAAEMSSSLRLTSGPAIGHAGDLAAILSSLQEDDVLFIDEIHRLARPA 128

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMEDF++D++VG+GP A S+ + L  FTL+ ATTR GLL  PL+DRFG    L 
Sbjct: 129 EEMLYLAMEDFRVDVVVGKGPGATSIPLTLPPFTLVGATTRAGLLPAPLRDRFGFTAHLE 188

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
            Y+  DL  IV+R A L G  +T++AA EIA RSRGTPR+A RLLRRV DFA V      
Sbjct: 189 PYQPPDLALIVKRSASLLGSEITEDAASEIARRSRGTPRVANRLLRRVIDFALVHGHPRC 248

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
             E A  AL    +D++G D+LD   L  +   F GGPVG+ T++  + E  + IE+++E
Sbjct: 249 DLESARRALELFEVDELGLDRLDRSVLRAVIERFAGGPVGLHTLAVSVGEEPETIEEVVE 308

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           P+++++G + RT RGR + P   +HLG+  P
Sbjct: 309 PFLVREGLLIRTNRGRAITPKGCEHLGVTPP 339


>gi|302561708|ref|ZP_07314050.1| Holliday junction DNA helicase RuvB [Streptomyces griseoflavus
           Tu4000]
 gi|302479326|gb|EFL42419.1| Holliday junction DNA helicase RuvB [Streptomyces griseoflavus
           Tu4000]
          Length = 357

 Score =  331 bits (848), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 161/330 (48%), Positives = 219/330 (66%), Gaps = 1/330 (0%)

Query: 5   EGLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E L+      ED A  + LRP+ L EF GQ +    L + + AA+AR    DHVL  G P
Sbjct: 14  ERLVGSVADGEDQAVEAALRPKDLGEFIGQEKVREQLDLVLRAARARGATADHVLLSGAP 73

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTL+ ++A E+    R TSGP I  AGDLAA+L++L++ +VLF+DEIHR+S   EE
Sbjct: 74  GLGKTTLSMIIAAEMEAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEE 133

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LY AMEDF++D++VG+GP A ++ + L  FTL+ ATTR GLL  PL+DRFG    + FY
Sbjct: 134 MLYMAMEDFRVDVIVGKGPGATAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTAHMEFY 193

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           E  +L+ +V R A L  + +    A EIA RSRGTPRIA RLLRRVRD+A+V     ITR
Sbjct: 194 EPAELQRVVHRSAHLLDVEIDAHGAAEIAGRSRGTPRIANRLLRRVRDYAQVKADGVITR 253

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
            IA+AAL    +D  G D+LD   L  + + FGGGPVG+ T+S  + E R+ +E++ EP+
Sbjct: 254 GIAEAALAVYEVDARGLDRLDRAVLEALLKLFGGGPVGLSTLSVAVGEERETVEEVAEPF 313

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           ++++G + RTPRGR+  P AW HLG+  P 
Sbjct: 314 LVREGLLARTPRGRVATPAAWAHLGLAPPR 343


>gi|224418229|ref|ZP_03656235.1| Holliday junction DNA helicase RuvB [Helicobacter canadensis MIT
           98-5491]
 gi|313141762|ref|ZP_07803955.1| holliday junction DNA helicase [Helicobacter canadensis MIT
           98-5491]
 gi|313130793|gb|EFR48410.1| holliday junction DNA helicase [Helicobacter canadensis MIT
           98-5491]
          Length = 333

 Score =  330 bits (847), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 167/324 (51%), Positives = 233/324 (71%), Gaps = 2/324 (0%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M+R   + +   + D ++  LRP   +++ GQ +   NLKVFIEAAK R + LDH+L  G
Sbjct: 1   MERIVEIEKMELEGDEEV-KLRPSDWDDYIGQEKLKRNLKVFIEAAKKRGDVLDHLLLFG 59

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA +++ E+    + T+ P+I KAGDLAA+LTNL + ++LFIDEIHRLS  +
Sbjct: 60  PPGLGKTTLAHIISGEMNAPIKVTAAPMIEKAGDLAAILTNLSEGEILFIDEIHRLSPAI 119

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILYPAMEDF+LD+++G GP+A++VKI+L RFTLI ATTR G+++NPL+DRFG+  R+ 
Sbjct: 120 EEILYPAMEDFRLDIIIGSGPAAQTVKIDLPRFTLIGATTRAGMISNPLRDRFGMQFRMQ 179

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FYE E+L  IVQ  +       ++E A EIA RSRGTPRIA RLL+RVRDFAEVA  + I
Sbjct: 180 FYEKEELARIVQIASIKLQKECSNEGALEIAKRSRGTPRIALRLLKRVRDFAEVAEEEII 239

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T+E    AL  L +++ GFD+LDLR+L +I  +  G P+G+ T++A +SE    +ED+IE
Sbjct: 240 TKERTQYALNELGVNEYGFDELDLRFLKIICES-RGRPIGLSTLAAAMSEDEGTVEDVIE 298

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQ 325
           PY++  GF++RT RGR+     ++
Sbjct: 299 PYLLVNGFLERTARGRIATQKTYE 322


>gi|283783299|ref|YP_003374053.1| Holliday junction DNA helicase RuvB [Gardnerella vaginalis 409-05]
 gi|283441733|gb|ADB14199.1| Holliday junction DNA helicase RuvB [Gardnerella vaginalis 409-05]
          Length = 353

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 159/324 (49%), Positives = 217/324 (66%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           S  +  E      LRPR LE F GQ    + L++F++AAK R  A DH+L  GPPGLGKT
Sbjct: 23  STPLGNEQLSDEELRPRALEGFIGQPVLKAQLQLFLDAAKKRDVAPDHMLLAGPPGLGKT 82

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           TLA +VA EL V  R TSGP I  AGDLA++L+ L+  +VLFIDEIHRL    EE+LY A
Sbjct: 83  TLAMIVANELQVPIRITSGPAIQHAGDLASILSALDAGEVLFIDEIHRLPRAAEELLYIA 142

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           MEDF++D+MVG+GP A S+ + L RFT++ ATTR G+L +PL+ RFG    L+FY  E+L
Sbjct: 143 MEDFRVDVMVGKGPGASSIPLTLPRFTVVGATTREGMLPSPLRARFGFTAHLDFYPHEEL 202

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           + +++R AK+ G+ + D+AA E+++RSRGTPRIA RLLRRVRD+A V     +  E    
Sbjct: 203 EKLIERSAKVLGIRLIDQAAKELSLRSRGTPRIANRLLRRVRDWAIVHDLSEVNHEAVVE 262

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL    ID  G D+LD+  L  +   F GGPVG+  ++A + E  + +E + EPY++++G
Sbjct: 263 ALALYQIDTQGLDRLDIAVLKAMVCQFNGGPVGLNNLAAMVGEEAETVETVCEPYLVREG 322

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIP 332
           F+ RTP+GR+    AW+HLG   P
Sbjct: 323 FLIRTPKGRVATSKAWKHLGFKEP 346


>gi|86157380|ref|YP_464165.1| Holliday junction DNA helicase RuvB [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|97189892|sp|Q2IPJ5|RUVB_ANADE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|85773891|gb|ABC80728.1| Holliday junction DNA helicase RuvB [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 342

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 164/316 (51%), Positives = 221/316 (69%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E+     LRP T +++ GQV+   N+KV+  AA+ R E+LDHVL  GPPGLGKT+LA ++
Sbjct: 17  EERLEQSLRPATFDDYVGQVKIVDNVKVYAAAARQRGESLDHVLLSGPPGLGKTSLAHIL 76

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           ARELGV    TSGP + K GDLA LLT L  RD+LFIDEIHRLS  VEE LYPAMED++ 
Sbjct: 77  ARELGVTLHVTSGPALVKKGDLAGLLTALAPRDILFIDEIHRLSPAVEEALYPAMEDYRF 136

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D+++G G  A+++++ L RFTL+ ATTR GLL +PL+DRF I  RL +Y   +LK I  R
Sbjct: 137 DVVLGAGLGAQTMEMKLERFTLVGATTRTGLLASPLRDRFPIQERLEYYGPAELKEIAVR 196

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A+  GL V ++ A E+A R+RGTPRIA RLL+R RDFA+V     +TRE+ D  L RL 
Sbjct: 197 AARKLGLPVDEDGAEELARRARGTPRIAIRLLQRARDFAQVEGDGRLTREVVDRTLRRLE 256

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D  G D +D R L  +   FGGGPVGI+ ++A + E    +ED+ EP+++++G++ RTP
Sbjct: 257 VDARGLDAMDRRILAAVIDTFGGGPVGIDAVAAAVGEESGTLEDVYEPFLVREGYLARTP 316

Query: 315 RGRLLMPIAWQHLGID 330
           RGR+ +P A+ HLG D
Sbjct: 317 RGRVALPAAYAHLGRD 332


>gi|193212227|ref|YP_001998180.1| Holliday junction DNA helicase RuvB [Chlorobaculum parvum NCIB
           8327]
 gi|238692619|sp|B3QM27|RUVB_CHLP8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|193085704|gb|ACF10980.1| Holliday junction DNA helicase RuvB [Chlorobaculum parvum NCIB
           8327]
          Length = 342

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 164/329 (49%), Positives = 228/329 (69%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M  E L +   + E      +RP+++ +F GQ +   NLKVFI AA+ R +ALDHVL  G
Sbjct: 1   MRIEALNTAPDATEVRFEEQIRPQSMSDFAGQKKLTDNLKVFITAARKRGDALDHVLLSG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+G   + TSGP+I KAG+LA LLT+L+  D+LFIDEIHRL+  V
Sbjct: 61  PPGLGKTTLAHIIAAEMGGGIKITSGPLIDKAGNLAGLLTSLKKGDILFIDEIHRLAPAV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE LY AMED+++D+++  GP++R+V++ L  FTL+ ATTR GLLT+PL+ RFGI  RL+
Sbjct: 121 EEYLYSAMEDYRIDILLDSGPASRAVQLKLEPFTLVGATTRSGLLTSPLRARFGINSRLD 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y  E L++I+ R A +  + V ++AA EIA RSRGTPRIA RLLRR RDFA+VA+  +I
Sbjct: 181 YYSPELLQSIIVRAAGILNIGVDEDAAMEIARRSRGTPRIANRLLRRARDFAQVANEASI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           +  +A   L  L ID+ G D +D + L  I R F GGPVG+ +++  + E +D IE++ E
Sbjct: 241 SLAVARRTLESLEIDEGGLDDMDKKILEAIVRKFNGGPVGVASLAVSVGEEQDTIEEVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           PY+IQ G++ RTPRGR+   +A Q     
Sbjct: 301 PYLIQVGYLARTPRGRVATRLAMQRFSYP 329


>gi|163840741|ref|YP_001625146.1| Holliday junction DNA helicase RuvB [Renibacterium salmoninarum
           ATCC 33209]
 gi|162954217|gb|ABY23732.1| holliday junction DNA helicase [Renibacterium salmoninarum ATCC
           33209]
          Length = 341

 Score =  330 bits (846), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 151/331 (45%), Positives = 214/331 (64%), Gaps = 1/331 (0%)

Query: 3   DREGLLSRN-VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           D   L+S +   +E    + LRP+ L++F GQ      L + +EA++ R  + DHVL  G
Sbjct: 7   DSRALVSSDGEPEERMIEAALRPKNLDDFVGQKRVRGQLSLVLEASRIRGRSADHVLLSG 66

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+    R +SGP I  AGDLAA+L++L + +VLF+DEIHR+S   
Sbjct: 67  PPGLGKTTLAMIIAAEMNAPLRISSGPAIQHAGDLAAILSSLTEGEVLFLDEIHRMSRPA 126

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMEDF++D++VG+G  A ++ + +  FTL+ ATTR GLL  PL+DRFG    L 
Sbjct: 127 EEMLYMAMEDFRVDIVVGKGAGATAIPLEIPPFTLVGATTRAGLLPGPLRDRFGFTGHLE 186

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY + +L+ +++R A L  L ++     EIA RSRGTPRIA RLLRRVRD+A V   + I
Sbjct: 187 FYSVPELELVLRRSAGLLDLKLSSAGFSEIAGRSRGTPRIANRLLRRVRDWALVNGVQQI 246

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
               A AAL    +D  G D+LD   L  +   F GGPVG+ T++  + E  + +E + E
Sbjct: 247 DARTASAALEMYEVDARGLDRLDRAVLQALIGKFNGGPVGLSTLAIAVGEEMETVETVAE 306

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           P+++++G + RTPRGR+ MP AW HLG+  P
Sbjct: 307 PFLVREGLLGRTPRGRIAMPAAWDHLGVPRP 337


>gi|313143025|ref|ZP_07805218.1| holliday junction ATP-dependent DNA helicase ruvB [Helicobacter
           cinaedi CCUG 18818]
 gi|313128056|gb|EFR45673.1| holliday junction ATP-dependent DNA helicase ruvB [Helicobacter
           cinaedi CCUG 18818]
          Length = 332

 Score =  330 bits (846), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 169/317 (53%), Positives = 230/317 (72%), Gaps = 2/317 (0%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E +    LRP   EE+ GQ +   NLKVFIEA+K R E LDH+LF GPPGLGKTTL+ ++
Sbjct: 9   ESSQELSLRPSVWEEYVGQEKIKKNLKVFIEASKRRNECLDHILFFGPPGLGKTTLSHII 68

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A E+  N + ++ P+I K+GDLAA+LTNL + D+LFIDEIHRLS  +EEILYPAMEDF+L
Sbjct: 69  AYEMDCNIKVSAAPMIEKSGDLAAILTNLNEGDILFIDEIHRLSPAIEEILYPAMEDFRL 128

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D+++G GP+A+++KI+L+ FTLI ATTR G+L+NPL+DRFG+  RL FYE ++L  IVQ 
Sbjct: 129 DIIIGSGPAAQTLKIDLAPFTLIGATTRAGMLSNPLRDRFGMSFRLQFYEPKELALIVQT 188

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK-TITREIADAALLRL 253
            AK    +++ E A EIA RSRGTPRIA RLLRRVRDFA+V  ++  I  E    AL  L
Sbjct: 189 AAKKLSKSLSQEGANEIARRSRGTPRIALRLLRRVRDFADVRDSQSEIDIECVHYALNEL 248

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            ++++GFD+LDL YL ++A +  G  +G+ TI+A +SE    IED+IEPY++  G+ +RT
Sbjct: 249 GVNELGFDELDLHYLAILAES-RGRAIGLNTIAAAMSEDEATIEDVIEPYLLANGYFERT 307

Query: 314 PRGRLLMPIAWQHLGID 330
            +GR+  P  ++ L I 
Sbjct: 308 AKGRIATPKTYELLKIP 324


>gi|300741594|ref|ZP_07071615.1| holliday junction DNA helicase RuvB [Rothia dentocariosa M567]
 gi|311113688|ref|YP_003984910.1| crossover junction ATP-dependent DNA helicase RuvB [Rothia
           dentocariosa ATCC 17931]
 gi|300380779|gb|EFJ77341.1| holliday junction DNA helicase RuvB [Rothia dentocariosa M567]
 gi|310945182|gb|ADP41476.1| crossover junction ATP-dependent DNA helicase RuvB [Rothia
           dentocariosa ATCC 17931]
          Length = 363

 Score =  330 bits (846), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 152/315 (48%), Positives = 210/315 (66%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
            + LRP++L++F GQ      L + +EA+K R  + DHVL  GPPGLGKTTLA ++A E+
Sbjct: 46  EAALRPKSLDDFVGQKRVRQQLSLVLEASKMRGRSADHVLLSGPPGLGKTTLAMIIAAEM 105

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138
               R TSGP I  +GDLAA+L++L   +VLF+DEIHR+S   EE+LY AMEDF++D++V
Sbjct: 106 EAPLRITSGPAIQHSGDLAAILSSLTPGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDIVV 165

Query: 139 GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKL 198
           G+G  A S+ + L +FTL+ ATTR GLL  PL+DRFG    L FY + +L+ +++R A L
Sbjct: 166 GKGAGATSIPLELPQFTLVGATTRAGLLPGPLRDRFGFTGHLEFYSVPELELVLRRSAGL 225

Query: 199 TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKM 258
             + +T E   EIA RSRGTPRIA RLLRRVRD+A V     I    A  AL    +D  
Sbjct: 226 MDMRITSEGYAEIAGRSRGTPRIANRLLRRVRDWALVNDVHDINSHDAATALDMYEVDAR 285

Query: 259 GFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRL 318
           G D+LD   L  +   FGGGPVG+ T++  + E  + +E + EPY++++G I RTPRGR+
Sbjct: 286 GLDRLDRAVLESLIHKFGGGPVGLSTLAIAVGEETETVETVAEPYLVREGLIGRTPRGRV 345

Query: 319 LMPIAWQHLGIDIPH 333
            +P AW+HLG++ P 
Sbjct: 346 ALPAAWEHLGLEAPE 360


>gi|307721656|ref|YP_003892796.1| Holliday junction DNA helicase RuvB [Sulfurimonas autotrophica DSM
           16294]
 gi|306979749|gb|ADN09784.1| Holliday junction DNA helicase RuvB [Sulfurimonas autotrophica DSM
           16294]
          Length = 337

 Score =  330 bits (846), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 170/328 (51%), Positives = 231/328 (70%), Gaps = 1/328 (0%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M+R   +     +E+     LRP    E+ GQ +   NL VFIEA+K R EALDHVLF G
Sbjct: 1   MERVVDIETFSLEEENSEVTLRPDAWSEYIGQEQIKKNLSVFIEASKKREEALDHVLFYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+  N + T+ P+I K+GDLAA+LTNLE+ D+LFIDEIHRLS  V
Sbjct: 61  PPGLGKTTLALIIANEMNANIKVTAAPMIEKSGDLAAILTNLEEGDILFIDEIHRLSPAV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILY +MED+++D+++G GP+A++VKI+L RFTLI ATTR G+L+NPL+DRFG+  R+N
Sbjct: 121 EEILYSSMEDYRIDIIIGSGPAAQTVKIDLPRFTLIGATTRAGMLSNPLRDRFGMSFRMN 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY  ++L  I+ + +      +  EAA EIA RSRGTPRIA RLLRRVRDFAEVA+ + I
Sbjct: 181 FYTHDELAKIILQASNKLEREIIHEAAVEIAKRSRGTPRIALRLLRRVRDFAEVANEEHI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
             +    AL  L I+  GFD++DLR LT++A +  G  +G+ TI+A LSE    +ED++E
Sbjct: 241 NHKRTQYALDELGINSHGFDEMDLRLLTLLASS-KGRAMGLSTIAAALSEDEGTVEDVLE 299

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           PY+I  G+++RT +GR   P  +  L +
Sbjct: 300 PYLIANGYLERTAKGRRATPATYDVLNM 327


>gi|239621475|ref|ZP_04664506.1| holliday junction ATP-dependent DNA helicase ruvB [Bifidobacterium
           longum subsp. infantis CCUG 52486]
 gi|239515936|gb|EEQ55803.1| holliday junction ATP-dependent DNA helicase ruvB [Bifidobacterium
           longum subsp. infantis CCUG 52486]
          Length = 354

 Score =  330 bits (846), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 156/323 (48%), Positives = 214/323 (66%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           S  +  E      LRP  L  F GQ    + L++F++AA+ R    DH+L  GPPGLGKT
Sbjct: 24  SSPIGNEPVSDEELRPHVLGGFIGQPRLKAQLQLFLDAARKRDVPPDHILLAGPPGLGKT 83

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           TLA +VA EL V  R TSGP +  AGDLA++L++L+  +VLFIDEIHRL    EE+LY A
Sbjct: 84  TLAMIVANELEVPIRVTSGPAVQHAGDLASILSSLDVGEVLFIDEIHRLPRAAEELLYIA 143

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           MEDF++D+MVG+GP A S+ + L RFT+I ATTR G+L +PL+ RFG    L+FY  E+L
Sbjct: 144 MEDFRVDVMVGKGPGASSIPLTLPRFTVIGATTREGMLPSPLRARFGFTAHLDFYPHEEL 203

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           + +++R A + G+ +   +A E+A+RSRGTPRIA RLLRRVRD+A V     +  +    
Sbjct: 204 EKLIERSANVLGVNLDTGSAHELALRSRGTPRIANRLLRRVRDWAIVHDLIVVRPDDVKE 263

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL    ID  G D+LD+  L  I RNF GGPVG+  ++A + E  + +E + EPY++++G
Sbjct: 264 ALALYQIDSEGLDRLDIAVLNAIVRNFNGGPVGLNNLAAMVGEESETVETVCEPYLVREG 323

Query: 309 FIQRTPRGRLLMPIAWQHLGIDI 331
           F+ RTP+GR+    AWQHLGI  
Sbjct: 324 FMIRTPKGRVATEKAWQHLGITP 346


>gi|23465307|ref|NP_695910.1| Holliday junction DNA helicase RuvB [Bifidobacterium longum
           NCC2705]
 gi|227547257|ref|ZP_03977306.1| Holliday junction DNA helicase B [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|44888505|sp|Q8G6B7|RUVB_BIFLO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|23325945|gb|AAN24546.1| holliday junction DNA helicase RuvB [Bifidobacterium longum
           NCC2705]
 gi|227212216|gb|EEI80112.1| Holliday junction DNA helicase B [Bifidobacterium longum subsp.
           infantis ATCC 55813]
          Length = 354

 Score =  330 bits (845), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 156/323 (48%), Positives = 215/323 (66%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           S+ +  E      LRP  L  F GQ    + L++F++AA+ R    DH+L  GPPGLGKT
Sbjct: 24  SQPIGNEPVSDEELRPHVLGGFIGQPRLKAQLQLFLDAARKRDVPPDHILLAGPPGLGKT 83

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           TLA +VA EL V  R TSGP +  AGDLA++L++L+  +VLFIDEIHRL    EE+LY A
Sbjct: 84  TLAMIVANELEVPIRVTSGPAVQHAGDLASILSSLDVGEVLFIDEIHRLPRAAEELLYIA 143

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           MEDF++D+MVG+GP A S+ + L RFT+I ATTR G+L +PL+ RFG    L+FY  E+L
Sbjct: 144 MEDFRVDVMVGKGPGASSIPLTLPRFTVIGATTREGMLPSPLRARFGFTAHLDFYPHEEL 203

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           + +++R A + G+ +   +A E+A+RSRGTPRIA RLLRRVRD+A V     +  +    
Sbjct: 204 EKLIERSANVLGVNLDTGSAHELALRSRGTPRIANRLLRRVRDWAIVHDLIVVRPDDVKE 263

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL    ID  G D+LD+  L  I RNF GGPVG+  ++A + E  + +E + EPY++++G
Sbjct: 264 ALALYQIDSEGLDRLDIAVLNAIVRNFNGGPVGLNNLAAMVGEESETVETVCEPYLVREG 323

Query: 309 FIQRTPRGRLLMPIAWQHLGIDI 331
           F+ RTP+GR+    AWQHLGI  
Sbjct: 324 FMIRTPKGRVATEKAWQHLGITP 346


>gi|172046248|sp|Q1QCY5|RUVB_PSYCK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
          Length = 331

 Score =  330 bits (845), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 187/326 (57%), Positives = 244/326 (74%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M ++ L++      DA  + +RP  L E+ GQ      ++VFI+AA+AR EALDH L  G
Sbjct: 5   MMQDRLINPLEGAADAPDANIRPALLAEYIGQPVVREQMEVFIQAARARDEALDHTLIFG 64

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++ARE+G N RSTSGPV+ +AGDLAA+LTNLE  DVLFIDEIHRLS ++
Sbjct: 65  PPGLGKTTLANIIAREMGGNLRSTSGPVLERAGDLAAMLTNLEAGDVLFIDEIHRLSPVI 124

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILYPAMEDFQLD+M+GEGP+ARS+K++L  FTL+AATTR GLLT+PL+DRFGI  RL 
Sbjct: 125 EEILYPAMEDFQLDIMIGEGPAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRLE 184

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY I DL TIV R A+L  + ++++ A EIA R+RGTPRIA RLLRRVRD+A+V    +I
Sbjct: 185 FYNIADLTTIVSRAARLMRVPMSEDGAVEIARRARGTPRIANRLLRRVRDYAQVRGDGSI 244

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
              IA +AL  LA+D+ G D LD RY+ ++   F GGP G+E ++A ++E R  +ED+IE
Sbjct: 245 NGAIAGSALDMLAVDRRGLDHLDRRYIEILHERFDGGPAGVEAVAAAMAEDRGTLEDVIE 304

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHL 327
           PY+IQQG++ RT RGR+L  +A   +
Sbjct: 305 PYLIQQGYVLRTARGRVLTQMAIDQM 330


>gi|332670538|ref|YP_004453546.1| Holliday junction DNA helicase RuvB [Cellulomonas fimi ATCC 484]
 gi|332339576|gb|AEE46159.1| Holliday junction DNA helicase RuvB [Cellulomonas fimi ATCC 484]
          Length = 355

 Score =  330 bits (845), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 163/328 (49%), Positives = 223/328 (67%), Gaps = 1/328 (0%)

Query: 5   EGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E L+       E A  + LRPRTL+EF GQ      L + ++AA+ R  A DHVL  GPP
Sbjct: 19  ESLVRSGADDVERAAEAALRPRTLDEFVGQRVVRDQLSLVLQAARRRGRAPDHVLLSGPP 78

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++A ELG + R TSGP I  AGDLAA+L++LE+ +VLF+DEIHRL+   EE
Sbjct: 79  GLGKTTLAMIIAAELGTSLRVTSGPAIQHAGDLAAVLSSLEEGEVLFLDEIHRLARPAEE 138

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LY AMEDF++D++VG+G  A ++ + L  FT++ ATTR GLL  PL+DRFG    L+FY
Sbjct: 139 LLYVAMEDFRVDVVVGKGAGASAIPLALPPFTVVGATTRAGLLPAPLRDRFGFTGHLDFY 198

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           E  +L+ ++ R A L G+ +  +AA EIA RSRGTPRIA RLLRRVRD+AEV     ++ 
Sbjct: 199 ETHELERVLLRSAGLLGVPLDGDAAAEIASRSRGTPRIANRLLRRVRDWAEVRGDGMLSL 258

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
             A AAL    +D  G D+LD   L+ +   FGGGPVG+ T++  + E  + +E + EP+
Sbjct: 259 AAARAALEVYEVDARGLDRLDRAVLSALCTRFGGGPVGLTTLAVAVGEEPETVETVAEPF 318

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           ++++G I RTPRGR+ +P AW+HLG+D 
Sbjct: 319 LVREGLIGRTPRGRVALPGAWEHLGLDP 346


>gi|296129642|ref|YP_003636892.1| Holliday junction DNA helicase RuvB [Cellulomonas flavigena DSM
           20109]
 gi|296021457|gb|ADG74693.1| Holliday junction DNA helicase RuvB [Cellulomonas flavigena DSM
           20109]
          Length = 359

 Score =  330 bits (845), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 160/329 (48%), Positives = 222/329 (67%), Gaps = 1/329 (0%)

Query: 5   EGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E L+     + E A  + LRPR LEEF GQ      L + ++AA  R  A DHVL  GPP
Sbjct: 23  ESLVRAAADEPERAAEAALRPRRLEEFVGQRVVRDQLSLVLQAALGRGRAPDHVLLSGPP 82

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++A ELG + R TSGP I  AGDLAA+L++LE+ +VLFIDEIHRL+   EE
Sbjct: 83  GLGKTTLAMIIAAELGASLRVTSGPAIQHAGDLAAVLSSLEEGEVLFIDEIHRLARPAEE 142

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LY AMEDF++D++VG+G  A ++ ++L  FT++ ATTR GLL  PL+DRFG    L+FY
Sbjct: 143 LLYVAMEDFRVDVVVGKGAGASAIPLSLPPFTVVGATTRAGLLPAPLRDRFGFTGHLDFY 202

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
             ++L+ ++ R A L  + +   AA EIA RSRGTPRIA RLLRRVRD+A+V    T++ 
Sbjct: 203 ADDELERVLVRSAGLLDVPLEAAAAAEIASRSRGTPRIANRLLRRVRDWAQVRGDGTLSL 262

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
             A +AL    +D  G D+LD   L  + R FGGGPVG+ T++  + E  + +E + EP+
Sbjct: 263 AAARSALDVYEVDVRGLDRLDRAVLDALCRRFGGGPVGLTTLAVAVGEEPETVETVAEPF 322

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++++G + RT RGR+ +P AW+HLG+ +P
Sbjct: 323 LVREGLVGRTARGRVALPPAWEHLGLPVP 351


>gi|308271855|emb|CBX28463.1| Holliday junction ATP-dependent DNA helicase ruvB [uncultured
           Desulfobacterium sp.]
          Length = 352

 Score =  330 bits (845), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 153/312 (49%), Positives = 207/312 (66%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           + +I  LRP ++ ++ GQ E    LK+ I+AAK R E +DHVL  GPPGLGKTTLA ++A
Sbjct: 33  EPEILSLRPESMSDYIGQKEVVETLKIAIQAAKQRGEPIDHVLLHGPPGLGKTTLAHIIA 92

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
            E G N   TSGP + K GDL  +LT+LE+ D+LFIDEIHR+  +VEE +YPAMEDF +D
Sbjct: 93  NETGANLTVTSGPALEKGGDLVGILTHLEEGDILFIDEIHRIPKVVEEFMYPAMEDFAID 152

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
            +  +G +ARS K  L  F L+ ATTRVGLL++PL+DRFGI   L+FY   DL  IV R 
Sbjct: 153 FVFDKGVNARSHKYRLKHFVLVGATTRVGLLSSPLRDRFGIFRTLDFYTESDLMIIVSRS 212

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255
           A L  + + ++AA E++ RSRGTPRI  RLL+RVRD+A+V     IT++    AL    +
Sbjct: 213 ADLLKIKIEEDAAYELSRRSRGTPRIVNRLLKRVRDYAQVRGDGIITKKTVQEALALEGV 272

Query: 256 DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR 315
           D+ G   LD RYL  +   + GGPVG+E I+A L E  D + D++EP++++ G I RT  
Sbjct: 273 DEKGLTNLDCRYLKTVIEFYNGGPVGVEAIAATLQEESDTLVDVVEPFLLKIGLIMRTSS 332

Query: 316 GRLLMPIAWQHL 327
           GR     A++HL
Sbjct: 333 GRKASEEAYKHL 344


>gi|46446742|ref|YP_008107.1| Holliday junction DNA helicase B [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|67472424|sp|Q6MC67|RUVB_PARUW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|46400383|emb|CAF23832.1| probable holliday junction DNA helicase, ruvB [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 332

 Score =  329 bits (844), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 157/326 (48%), Positives = 218/326 (66%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M++  + S    QE +    LRP+ L +F GQ      L+V I AA+ R E L H LF G
Sbjct: 1   MNKNFIESNLNKQELSFEVPLRPQCLTDFVGQDSIRDRLEVHIGAARQRGEVLGHCLFSG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++++ +  N   TSGPVI KAGDLA +LT+L+  DVLFIDEIHRL+  V
Sbjct: 61  PPGLGKTTLASILSKAMESNLVLTSGPVIEKAGDLAGILTSLKTGDVLFIDEIHRLNRSV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE LY AMEDF LDLM+  GP+ARS+++ L++FTL  ATTR+GLL+ PL+ RF    RL 
Sbjct: 121 EEYLYQAMEDFALDLMIDSGPNARSIQVKLNQFTLAGATTRLGLLSEPLRSRFAFTCRLE 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y+   L+ I+ R +++  + +  EAA EIA RSRGTPR+A  LLR VRDFA++     I
Sbjct: 181 YYDPMILQKILLRTSRILNVKIDSEAALEIAKRSRGTPRVANHLLRWVRDFAQIKANNYI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
              +A+ AL  L+ID+ G D++D + L  +  ++ GGPVGI  I+A + E    +E++ E
Sbjct: 241 DLSVANRALTMLSIDEKGLDEMDKKMLQTMIDHYSGGPVGINAIAASIGEEPSTVEEVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHL 327
           PY+I QG ++RTPRGR +  + +QH+
Sbjct: 301 PYLILQGLLKRTPRGREVTSLGYQHI 326


>gi|224436522|ref|ZP_03657531.1| Holliday junction DNA helicase RuvB [Helicobacter cinaedi CCUG
           18818]
          Length = 350

 Score =  329 bits (844), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 169/317 (53%), Positives = 230/317 (72%), Gaps = 2/317 (0%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E +    LRP   EE+ GQ +   NLKVFIEA+K R E LDH+LF GPPGLGKTTL+ ++
Sbjct: 27  ESSQELSLRPSVWEEYVGQEKIKKNLKVFIEASKRRNECLDHILFFGPPGLGKTTLSHII 86

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A E+  N + ++ P+I K+GDLAA+LTNL + D+LFIDEIHRLS  +EEILYPAMEDF+L
Sbjct: 87  AYEMDCNIKVSAAPMIEKSGDLAAILTNLNEGDILFIDEIHRLSPAIEEILYPAMEDFRL 146

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D+++G GP+A+++KI+L+ FTLI ATTR G+L+NPL+DRFG+  RL FYE ++L  IVQ 
Sbjct: 147 DIIIGSGPAAQTLKIDLAPFTLIGATTRAGMLSNPLRDRFGMSFRLQFYEPKELALIVQT 206

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK-TITREIADAALLRL 253
            AK    +++ E A EIA RSRGTPRIA RLLRRVRDFA+V  ++  I  E    AL  L
Sbjct: 207 AAKKLSKSLSQEGANEIARRSRGTPRIALRLLRRVRDFADVRDSQSEIDIECVHYALNEL 266

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            ++++GFD+LDL YL ++A +  G  +G+ TI+A +SE    IED+IEPY++  G+ +RT
Sbjct: 267 GVNELGFDELDLHYLAILAES-RGRAIGLNTIAAAMSEDEATIEDVIEPYLLANGYFERT 325

Query: 314 PRGRLLMPIAWQHLGID 330
            +GR+  P  ++ L I 
Sbjct: 326 AKGRIATPKTYELLKIP 342


>gi|71065276|ref|YP_264003.1| Holliday junction DNA helicase RuvB [Psychrobacter arcticus 273-4]
 gi|97190239|sp|Q4FTT9|RUVB_PSYA2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|71038261|gb|AAZ18569.1| Holliday junction DNA helicase RuvB [Psychrobacter arcticus 273-4]
          Length = 331

 Score =  329 bits (844), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 187/326 (57%), Positives = 243/326 (74%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M ++ L++      DA  + +RP  L E+ GQ      ++VFI+AA+AR EALDH L  G
Sbjct: 5   MMQDRLINPLEGAADAPDANIRPALLAEYIGQPVVREQMEVFIQAARARDEALDHTLIFG 64

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++ARE+G N RSTSGPV+ +AGDLAA+LTNLE  DVLFIDEIHRLS ++
Sbjct: 65  PPGLGKTTLANIIAREMGGNLRSTSGPVLERAGDLAAMLTNLEAGDVLFIDEIHRLSPVI 124

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILYPAMEDFQLD+M+GEGP+ARS+K+ L  FTL+AATTR GLLT+PL+DRFGI  RL 
Sbjct: 125 EEILYPAMEDFQLDIMIGEGPAARSIKLELPPFTLVAATTRAGLLTSPLRDRFGIVQRLE 184

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY I DL TIV R A+L  + ++++ A EIA R+RGTPRIA RLLRRVRD+A+V    +I
Sbjct: 185 FYNIADLTTIVSRAARLMRVPMSEDGAVEIARRARGTPRIANRLLRRVRDYAQVRGDGSI 244

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
              IA +AL  LA+D+ G D LD RY+ ++   F GGP G+E ++A ++E R  +ED+IE
Sbjct: 245 NGAIAGSALDMLAVDRRGLDHLDRRYIEILHERFDGGPAGVEAVAAAMAEDRGTLEDVIE 304

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHL 327
           PY+IQQG++ RT RGR+L  +A   +
Sbjct: 305 PYLIQQGYVLRTARGRVLTQMAIDQM 330


>gi|184201010|ref|YP_001855217.1| Holliday junction DNA helicase RuvB [Kocuria rhizophila DC2201]
 gi|183581240|dbj|BAG29711.1| Holliday junction DNA helicase RuvB [Kocuria rhizophila DC2201]
          Length = 366

 Score =  329 bits (844), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 157/330 (47%), Positives = 218/330 (66%), Gaps = 1/330 (0%)

Query: 5   EGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           + L+      +D  +   LRP TL++F GQ    + L + +EA+K R    DHVL  GPP
Sbjct: 12  QRLVGAEGDYDDQQLEASLRPGTLDDFVGQKRVRAQLSLVLEASKLRGRTADHVLLSGPP 71

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA ++A EL V  R +SGP I  AGDLAA+L++L   +VLF+DEIHR+S   EE
Sbjct: 72  GLGKTTLAMIIAEELEVPLRISSGPAIQHAGDLAAILSSLTHGEVLFLDEIHRMSRPAEE 131

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LY AMEDF++D++VG+G  A S+ ++L  FTL+ ATTR GLL  PL+DRFG    L FY
Sbjct: 132 MLYMAMEDFRVDIVVGKGAGATSIPLDLPPFTLVGATTRAGLLPGPLRDRFGFTGHLEFY 191

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            + +L+ +++R A L  LA+T EA  E+A RSRGTPRIA RLLRRVRD+A V   + I  
Sbjct: 192 SVPELELVLRRSAGLLDLAMTSEAFSEVASRSRGTPRIANRLLRRVRDWALVHGVERIDA 251

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
             A AAL    +D  G D+LD   L+ +   F GGPVG+ T++  + E  + +E + EP+
Sbjct: 252 RAAGAALDMYEVDARGLDRLDRNVLSALVGKFNGGPVGLSTLAIAVGEETETVETVAEPF 311

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           ++++G + RTPRGR+ M  AW+HLG+ +P 
Sbjct: 312 LVREGLLGRTPRGRIAMAAAWEHLGLAVPD 341


>gi|73667298|ref|YP_303314.1| Holliday junction DNA helicase B [Ehrlichia canis str. Jake]
 gi|97190039|sp|Q3YRD9|RUVB_EHRCJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|72394439|gb|AAZ68716.1| Holliday junction DNA helicase subunit RuvB [Ehrlichia canis str.
           Jake]
          Length = 329

 Score =  329 bits (844), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 185/323 (57%), Positives = 239/323 (73%), Gaps = 3/323 (0%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            +L      ED     +RP  L+EF GQ    +NLK+FI AA  R E +DHVL  GPPGL
Sbjct: 3   NILQSTECLEDQQNVSIRPNLLDEFIGQSSVVNNLKIFINAAYTRKEPMDHVLLYGPPGL 62

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLA ++A+EL VNFRST+GP+++KAGDLAA+LTNL+ +D+LFIDEIHRL+  +EEIL
Sbjct: 63  GKTTLAHIIAKELKVNFRSTAGPLLSKAGDLAAILTNLQAKDILFIDEIHRLNRNIEEIL 122

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           Y AMEDF LD++VGEG  AR+++++L +FTL+ ATTR+GLL+NPL+DRFGIPI L FY  
Sbjct: 123 YSAMEDFCLDIIVGEGCGARTLRVDLPKFTLVGATTRIGLLSNPLRDRFGIPIHLEFYST 182

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV-AHAKTITRE 244
           E+L  ++QR AK+    ++D  A EI++R+RGTPRIA RLLRR+RDF EV  H KTIT  
Sbjct: 183 EELIKVIQRAAKVIKTDISDSGAQEISLRARGTPRIALRLLRRIRDFIEVTEHNKTITDT 242

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
            AD ALLRL IDK+G D+ D++YL  I  +    P GI+TIS+GLSE    IE+ IEPY+
Sbjct: 243 FADKALLRLGIDKLGLDRQDIQYLKFIHDS--NNPTGIDTISSGLSEDTGNIEETIEPYL 300

Query: 305 IQQGFIQRTPRGRLLMPIAWQHL 327
           I+  FIQRTPRGR++   A  +L
Sbjct: 301 IKINFIQRTPRGRVITQKAISYL 323


>gi|297243470|ref|ZP_06927402.1| Holliday junction resolvasome, helicase subunit [Gardnerella
           vaginalis AMD]
 gi|296888515|gb|EFH27255.1| Holliday junction resolvasome, helicase subunit [Gardnerella
           vaginalis AMD]
          Length = 353

 Score =  329 bits (843), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 158/324 (48%), Positives = 216/324 (66%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           S  +  E      LRP  LE F GQ    + L++F++AAK R  A DH+L  GPPGLGKT
Sbjct: 23  STPLGNEQLSDEELRPHALEGFIGQPVLKAQLQLFLDAAKKRDVAPDHMLLAGPPGLGKT 82

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           TLA +VA EL V  R TSGP I  AGDLA++L+ L+  +VLFIDEIHRL    EE+LY A
Sbjct: 83  TLAMIVANELQVPIRITSGPAIQHAGDLASILSALDAGEVLFIDEIHRLPRAAEELLYIA 142

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           MEDF++D+MVG+GP A S+ + L RFT++ ATTR G+L +PL+ RFG    L+FY  E+L
Sbjct: 143 MEDFRVDVMVGKGPGASSIPLTLPRFTVVGATTREGMLPSPLRARFGFTAHLDFYPHEEL 202

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           + +++R AK+ G+ + D+AA E+++RSRGTPRIA RLLRRVRD+A V     +  E    
Sbjct: 203 EKLIERSAKVLGIRLVDQAARELSLRSRGTPRIANRLLRRVRDWAIVHDLSEVNHEDVVE 262

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL    ID  G D+LD+  L  +   F GGPVG+  ++A + E  + +E + EPY++++G
Sbjct: 263 ALALYQIDTQGLDRLDIAVLKAMVCQFNGGPVGLNNLAAMVGEEAETVETVCEPYLVREG 322

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIP 332
           F+ RTP+GR+    AW+HLG   P
Sbjct: 323 FLIRTPKGRVATSKAWKHLGFKEP 346


>gi|213692040|ref|YP_002322626.1| Holliday junction DNA helicase RuvB [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|254767412|sp|B7GR18|RUVB_BIFLI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|213523501|gb|ACJ52248.1| Holliday junction DNA helicase RuvB [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320458152|dbj|BAJ68773.1| holliday junction DNA helicase RuvB [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 354

 Score =  329 bits (843), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 156/323 (48%), Positives = 217/323 (67%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           S+ +  E A    LRP  L  F GQ    + L++F++AA+ R    DH+L  GPPGLGKT
Sbjct: 24  SQPIGNEPASDEELRPHVLGGFIGQPRLKAQLQLFLDAARKRDVPPDHILLAGPPGLGKT 83

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           TLA +VA EL V  R TSGP +  AGDLA++L++L+  +VLFIDEIHRL    EE+LY A
Sbjct: 84  TLAMIVANELEVPIRVTSGPAVQHAGDLASILSSLDTGEVLFIDEIHRLPRAAEELLYIA 143

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           MEDF++D+MVG+GP A S+ + L RFT+I ATTR G+L +PL+ RFG    L+FY  ++L
Sbjct: 144 MEDFRVDVMVGKGPGASSIPLTLPRFTVIGATTREGMLPSPLRARFGFTAHLDFYPHDEL 203

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           + +++R A + G+ + D +A E+A+RSRGTPRIA RLLRRVRD+A V     +  +    
Sbjct: 204 QKLIERSANVLGVNLGDGSARELALRSRGTPRIANRLLRRVRDWAIVHDLIEVRSDDVKE 263

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL    ID  G D+LD+  L  I RNF GGPVG+  ++A + E  + +E + EPY++++G
Sbjct: 264 ALALYQIDSEGLDRLDIAVLDAIVRNFNGGPVGLNNLAAMVGEESETVETVCEPYLVREG 323

Query: 309 FIQRTPRGRLLMPIAWQHLGIDI 331
           F+ RTP+GR+    AW+HLGI  
Sbjct: 324 FLIRTPKGRVATEKAWRHLGITP 346


>gi|237752769|ref|ZP_04583249.1| holliday junction DNA helicase B [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229376258|gb|EEO26349.1| holliday junction DNA helicase B [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 333

 Score =  328 bits (842), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 165/322 (51%), Positives = 226/322 (70%), Gaps = 2/322 (0%)

Query: 5   EGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E ++       D +    LRP   +++ GQ +   NL+VFIEAAK R + LDH+L  GPP
Sbjct: 2   ERIVEIEKMSLDGEEEIKLRPSCWDDYIGQEKLKKNLQVFIEAAKKRGDVLDHLLLFGPP 61

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA +++ E+  + + T+ P+I KAGDLAA+LTNL + ++LFIDEIHRLS  +EE
Sbjct: 62  GLGKTTLAHIISTEMQTSIKVTAAPMIEKAGDLAAILTNLNEGEILFIDEIHRLSPAIEE 121

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILYPAMEDF+LD+++G GP+A+SVKI+L RFTLI ATTR G+++NPL+DRFG+  R+ FY
Sbjct: 122 ILYPAMEDFRLDIIIGSGPAAQSVKIDLPRFTLIGATTRAGMISNPLRDRFGMQFRMQFY 181

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           E ++L  IV   +         E A EIA RSRGTPRIA RLL+RVRDFAEVA    IT+
Sbjct: 182 ENDELAKIVTLASIKLQKECKKEGALEIAKRSRGTPRIALRLLKRVRDFAEVAEEAMITK 241

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           E    AL  L +++ GFD+LDLR+L +I  +  G P+G+ T++A +SE    IED+IEPY
Sbjct: 242 ERTQYALNELGVNEHGFDELDLRFLKIICES-RGRPIGLSTLAAAMSEDEGTIEDVIEPY 300

Query: 304 MIQQGFIQRTPRGRLLMPIAWQ 325
           ++  GF++RT RGR+     ++
Sbjct: 301 LLVNGFLERTARGRIATQKTYE 322


>gi|330444415|ref|YP_004377401.1| Holliday junction DNA helicase RuvB [Chlamydophila pecorum E58]
 gi|328807525|gb|AEB41698.1| Holliday junction DNA helicase RuvB [Chlamydophila pecorum E58]
          Length = 330

 Score =  328 bits (842), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 146/316 (46%), Positives = 207/316 (65%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           ++ +      LRP+ L+EF GQ      L +F++AA  R E   H LF GPPGLGKT+LA
Sbjct: 8   LNPDKKLDFSLRPKGLQEFYGQAHVKERLDLFLQAALQRQEVPGHCLFFGPPGLGKTSLA 67

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            +VA  +G    + SGP + K  DL  LLT+L++ DV FIDEIHRL    EE LYPA+ED
Sbjct: 68  HIVAATVGKGLVTASGPQLVKPSDLIGLLTSLQEGDVFFIDEIHRLGKAAEEYLYPAIED 127

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F++D+ +  GP ARSV+I+L+ FTL+ ATTR G+L+ PL+ RF    RL++Y  +DL  I
Sbjct: 128 FKIDITIDSGPGARSVRIDLAPFTLVGATTRSGMLSEPLRTRFAFSARLSYYSDQDLIDI 187

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           + R AKL G+     A  EIA RSRGTPR+A  LL+ VRDFA++     I  ++A+ AL 
Sbjct: 188 LTRSAKLLGIQAEPAALLEIARRSRGTPRLANHLLKWVRDFAQMREGNCINGDVAEKALA 247

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L ID  G +++D++ LT +   + GGPVGI+T+S  + E    +ED+ EP++I +G I+
Sbjct: 248 MLLIDDWGLNEVDVKLLTTMIEYYQGGPVGIKTLSVAVGEDIKTLEDVYEPFLILKGLIK 307

Query: 312 RTPRGRLLMPIAWQHL 327
           +TPRGR++  +A+ HL
Sbjct: 308 KTPRGRMVTQLAYDHL 323


>gi|294790878|ref|ZP_06756036.1| holliday junction DNA helicase RuvB [Scardovia inopinata F0304]
 gi|294458775|gb|EFG27128.1| holliday junction DNA helicase RuvB [Scardovia inopinata F0304]
          Length = 367

 Score =  328 bits (842), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 156/330 (47%), Positives = 221/330 (66%), Gaps = 1/330 (0%)

Query: 3   DREGLLSRNVSQEDAD-ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           +   ++S +   +D+     LRP TLE F GQ +  + L +F+ AA+ R    DH+L  G
Sbjct: 28  ESLRIISADPDADDSISDEELRPSTLETFIGQPQLKAQLGLFLNAARKRQVPPDHILLAG 87

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA +VA EL V  R TSGP I  AGDLA++L++L++ +VLFIDEIHRL    
Sbjct: 88  PPGLGKTTLAMIVAHELDVPIRVTSGPAIQHAGDLASILSSLDEGEVLFIDEIHRLPRAA 147

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMEDF++D+MVG+GP A S+ + L RFT++ ATTR G+L +PL+ RFG    L+
Sbjct: 148 EELLYIAMEDFRVDVMVGKGPGASSIPLTLPRFTVVGATTREGMLPSPLRARFGFTAHLD 207

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y   +L+ +++R + +  L V D+AA E+A+RSRGTPR+A RLLRRVRD+  V    TI
Sbjct: 208 YYPTSELERLIKRSSSVLDLTVDDQAAHELAVRSRGTPRVANRLLRRVRDWGIVHDLPTI 267

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
             +    AL    IDK G D+LD+  LT + + F GGPVG+  ++A + E  + +E + E
Sbjct: 268 DADSVIDALELYQIDKEGLDRLDIAVLTALCKQFHGGPVGLNNLAAMVGEEAETVETVCE 327

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           PY++++GF+ RTPRGR     AW+HLG+  
Sbjct: 328 PYLVREGFLIRTPRGRAATERAWRHLGLSP 357


>gi|119025823|ref|YP_909668.1| Holliday junction DNA helicase RuvB [Bifidobacterium adolescentis
           ATCC 15703]
 gi|171473027|sp|A1A1K3|RUVB_BIFAA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|118765407|dbj|BAF39586.1| holliday junction ATP-dependent DNA helicase ruvB [Bifidobacterium
           adolescentis ATCC 15703]
          Length = 362

 Score =  328 bits (842), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 158/332 (47%), Positives = 220/332 (66%), Gaps = 1/332 (0%)

Query: 3   DREGLLSRN-VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           +   ++S   V  E      LRP  LE F GQ    + L++F++AA+ R    DH+L  G
Sbjct: 22  ESLRMVSAAPVGNEPVSDEELRPHILEGFIGQPRLKAQLQLFLDAARKRDVPPDHILLAG 81

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA +VA EL V  R TSGP I  AGDLA++L++L+  +VLFIDEIHRL    
Sbjct: 82  PPGLGKTTLAMIVANELEVPIRVTSGPAIQHAGDLASILSSLDAGEVLFIDEIHRLPRAA 141

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMEDF++D+MVG+GP A S+ + L RFT+I ATTR G+L +PL+ RFG    L+
Sbjct: 142 EELLYIAMEDFRVDVMVGKGPGASSIPLTLPRFTVIGATTREGMLPSPLRARFGFTAHLD 201

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY  E+L+ +++R + + G+ + D AA ++AMRSRGTPRIA RLLRRVRD+A V   +++
Sbjct: 202 FYPHEELEKLIERSSAVLGIQLEDGAARQLAMRSRGTPRIANRLLRRVRDWAIVHDLESV 261

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
             +    AL    ID  G D+LD+  L  I  NF GGPVG+  ++A + E  + +E + E
Sbjct: 262 RPDDVKEALALYQIDTEGLDRLDIAVLKAIVTNFNGGPVGLNNLAAMVGEESETVETVCE 321

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           PY++++GF+ RTP+GR+    AW+HLGI    
Sbjct: 322 PYLVREGFLIRTPKGRVATRKAWEHLGITPDE 353


>gi|162447236|ref|YP_001620368.1| Holliday junction DNA helicase RuvB [Acholeplasma laidlawii PG-8A]
 gi|189045779|sp|A9NF62|RUVB_ACHLI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|161985343|gb|ABX80992.1| holliday junction DNA helicase RuvB [Acholeplasma laidlawii PG-8A]
          Length = 337

 Score =  328 bits (842), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 161/330 (48%), Positives = 229/330 (69%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M  E  + R+++ ++ D  +LRP+TL ++ GQ +    L ++I+AA  R E+LDHVL  G
Sbjct: 1   MSEEKSVLRDLNLKNDDELMLRPQTLNQYIGQDDIKEMLSIYIQAALKREESLDHVLLYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
            PGLGKTTLAQ++A ELGV+ + TSGP I K GDL ALL++L   DVLFIDEIHR+   V
Sbjct: 61  APGLGKTTLAQIIANELGVDIKITSGPAIEKTGDLVALLSSLSPGDVLFIDEIHRIPRFV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMED+ LD+++ +   +RS++I L  FTLI ATTR G L++PL++RFG   RL+
Sbjct: 121 EEVLYSAMEDYTLDIVLDKERDSRSIRIELPPFTLIGATTRFGDLSHPLRERFGAVFRLS 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y++E++K IV+R +K+    + ++A  E++ RSRGTPRIA RL RRVRDFAE+     I
Sbjct: 181 YYKLEEIKQIVRRTSKVYQNEIDEKAVDELSKRSRGTPRIANRLFRRVRDFAEIMTDAVI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T +I   AL +L ID  G D  D  YL  I   F GGPVG+E++++ + E    IED+ E
Sbjct: 241 TLDITQLALTKLGIDHKGLDASDYLYLRGIVERFNGGPVGLESLASTIGEEPGTIEDVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           PY++Q+G+I+RTPRGR+   +A+  LG+  
Sbjct: 301 PYLLQEGYIKRTPRGRVATELAYNLLGVKY 330


>gi|21674448|ref|NP_662513.1| Holliday junction DNA helicase B [Chlorobium tepidum TLS]
 gi|25453272|sp|Q8KC00|RUVB_CHLTE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|21647634|gb|AAM72855.1| Holliday junction DNA helicase RuvB [Chlorobium tepidum TLS]
          Length = 344

 Score =  328 bits (842), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 165/332 (49%), Positives = 230/332 (69%), Gaps = 3/332 (0%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M  E L +   + E      +RP+ + +F GQ +   NLKVFI AA+ R EALDHVL  G
Sbjct: 1   MRIEALNTAPDATEARFEEQIRPQKMGDFAGQKKLIDNLKVFITAARKRGEALDHVLLSG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+G + + TSGP+I KAG+LA LLT+++  D+LFIDEIHRL+  V
Sbjct: 61  PPGLGKTTLAHIIAAEMGGSIKITSGPLIDKAGNLAGLLTSMKKGDILFIDEIHRLAPAV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE LY AMED+++D+++  GP++R+V++ L  FTL+ ATTR GLLT+PL+ RFGI  RL+
Sbjct: 121 EEYLYSAMEDYRIDILLDSGPASRAVQLKLEPFTLVGATTRAGLLTSPLRARFGINSRLD 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y  E L++I+ R A +  + + ++AA EIA RSRGTPRIA RLLRR RDFA+VA   +I
Sbjct: 181 YYNPELLQSIIIRAAGILNIGIDEDAAMEIARRSRGTPRIANRLLRRARDFAQVAGDASI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           +  +A   L  L ID+ G D +D + L  I R F GGPVG+ +++  + E +D IE++ E
Sbjct: 241 SLAVARRTLESLEIDEGGLDDMDKKILEAIVRKFNGGPVGLASLAVSVGEEQDTIEEVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIA---WQHLGID 330
           PY+IQ G++ RTPRGR+   +A   + H GI 
Sbjct: 301 PYLIQMGYLSRTPRGRVATRLAMSRFAHPGIS 332


>gi|224283111|ref|ZP_03646433.1| Holliday junction DNA helicase RuvB [Bifidobacterium bifidum NCIMB
           41171]
 gi|311064394|ref|YP_003971119.1| holliday junction DNA helicase RuvB [Bifidobacterium bifidum
           PRL2010]
 gi|310866713|gb|ADP36082.1| RuvB Holliday junction DNA helicase [Bifidobacterium bifidum
           PRL2010]
          Length = 361

 Score =  328 bits (842), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 155/330 (46%), Positives = 223/330 (67%), Gaps = 1/330 (0%)

Query: 3   DREGLLSRNVSQEDAD-ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           D   ++S     ++      LRP  L+ F GQ    + L++F++AA+ R  A DH+L  G
Sbjct: 19  DSLRMVSATAINDEPISDEELRPHALDGFVGQPRLKAQLQLFLDAARKRDTAPDHILLAG 78

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA +VA EL V  R TSGP I  AGDLA++L++L+  +VLFIDEIHRL    
Sbjct: 79  PPGLGKTTLAMIVANELEVPIRITSGPAIQHAGDLASILSSLDAGEVLFIDEIHRLPRAA 138

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMEDF++D+MVG+GP A S+ + L RFT++ ATTR G+L +PL+ RFG    L+
Sbjct: 139 EELLYIAMEDFRVDVMVGKGPGASSIPLTLPRFTVVGATTREGMLPSPLRARFGFTAHLD 198

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY  ++L+ +++R + + G+++ + AA E+A+RSRGTPRIA RLLRRVRD+A V   + +
Sbjct: 199 FYPHDELEKLIERSSGVLGVSLGEGAAAELALRSRGTPRIANRLLRRVRDWAIVHDLQVV 258

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
             +   AAL    ID  G D+LD+  L  I RNF GGPVG+  ++A + E  + +E + E
Sbjct: 259 DVDDVRAALALYQIDSEGLDRLDIAVLNAIVRNFNGGPVGLNNLAAMVGEESETVETVCE 318

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           PY++++GF+ RTP+GR+    AW HLG++ 
Sbjct: 319 PYLVREGFLIRTPKGRVATAKAWSHLGLEP 348


>gi|154487344|ref|ZP_02028751.1| hypothetical protein BIFADO_01194 [Bifidobacterium adolescentis
           L2-32]
 gi|154083862|gb|EDN82907.1| hypothetical protein BIFADO_01194 [Bifidobacterium adolescentis
           L2-32]
          Length = 362

 Score =  328 bits (841), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 157/332 (47%), Positives = 220/332 (66%), Gaps = 1/332 (0%)

Query: 3   DREGLLSRN-VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           +   ++S   V  E      LRP  L+ F GQ    + L++F++AA+ R    DH+L  G
Sbjct: 22  ESLRMVSAAPVGNEPVSDEELRPHILKGFIGQPRLKAQLQLFLDAARKRDVPPDHILLAG 81

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA +VA EL V  R TSGP I  AGDLA++L++L+  +VLFIDEIHRL    
Sbjct: 82  PPGLGKTTLAMIVANELEVPIRVTSGPAIQHAGDLASILSSLDAGEVLFIDEIHRLPRAA 141

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMEDF++D+MVG+GP A S+ + L RFT+I ATTR G+L +PL+ RFG    L+
Sbjct: 142 EELLYIAMEDFRVDVMVGKGPGASSIPLTLPRFTVIGATTREGMLPSPLRARFGFTAHLD 201

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY  E+L+ +++R + + G+ + D AA ++AMRSRGTPRIA RLLRRVRD+A V   +++
Sbjct: 202 FYPHEELEKLIERSSAVLGIQLEDGAARQLAMRSRGTPRIANRLLRRVRDWAIVHDLESV 261

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
             +    AL    ID  G D+LD+  L  I  NF GGPVG+  ++A + E  + +E + E
Sbjct: 262 RPDDVKEALALYQIDTEGLDRLDIAVLKAIVTNFNGGPVGLNNLAAMVGEESETVETVCE 321

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           PY++++GF+ RTP+GR+    AW+HLGI    
Sbjct: 322 PYLVREGFLIRTPKGRVATRKAWEHLGITPDE 353


>gi|237750468|ref|ZP_04580948.1| holliday junction DNA helicase B [Helicobacter bilis ATCC 43879]
 gi|229373998|gb|EEO24389.1| holliday junction DNA helicase B [Helicobacter bilis ATCC 43879]
          Length = 347

 Score =  328 bits (841), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 161/321 (50%), Positives = 228/321 (71%), Gaps = 2/321 (0%)

Query: 5   EGLLSRNVSQEDAD-ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E +++ +    D+   + LRP + E + GQ +   NL+VFIEA+K R E LDH+LF GPP
Sbjct: 13  ERIIAGDKKTIDSQNENTLRPISWENYIGQDKIKKNLQVFIEASKKRNECLDHILFFGPP 72

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTT++ ++A E+G N + ++ P+I KAGDLAA++TNL   D+LFIDEIHRLS  +EE
Sbjct: 73  GLGKTTISHIIAHEMGANIKVSAAPMIEKAGDLAAIMTNLSHGDILFIDEIHRLSPAIEE 132

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILYPAMEDF+LD+++G+G +A+++KI+L+ FTLI ATTR G+L+NPL+DRFGI  +L FY
Sbjct: 133 ILYPAMEDFRLDIIIGQGAAAQTIKIDLAPFTLIGATTRAGMLSNPLRDRFGISAKLEFY 192

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
             ++L  I+ + +      + + +A EIA RSRGTPRIA RLL+RVRDFAEV     I  
Sbjct: 193 NEDELALIITKASLKLNTKINEMSAKEIAKRSRGTPRIALRLLKRVRDFAEVQDKNMIDE 252

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
            IA  AL  L ++++GFD++DL YL  I     G P+G+ TI+A +SE    IED+IEPY
Sbjct: 253 VIAKHALNELGVNELGFDEMDLGYLK-ILSQANGRPIGLNTIAAAMSEDEGTIEDVIEPY 311

Query: 304 MIQQGFIQRTPRGRLLMPIAW 324
           ++  G+I+RT +GR+  P  +
Sbjct: 312 LLANGYIERTAKGRIATPKTY 332


>gi|255323346|ref|ZP_05364480.1| holliday junction DNA helicase RuvB [Campylobacter showae RM3277]
 gi|255299638|gb|EET78921.1| holliday junction DNA helicase RuvB [Campylobacter showae RM3277]
          Length = 339

 Score =  328 bits (841), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 166/328 (50%), Positives = 232/328 (70%), Gaps = 2/328 (0%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MDR   + +   + D ++S LRP   E++ GQ +   NL VFI+AAK R E LDHVLF G
Sbjct: 1   MDRIVEIEKISFENDFEVS-LRPTRFEDYIGQGKIKQNLGVFIKAAKKRGECLDHVLFYG 59

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+GV+ + T+ P+I K+GDLAA+LTNL++ DVLFIDEIHRLS  +
Sbjct: 60  PPGLGKTTLAHIIANEMGVSIKMTAAPMIEKSGDLAAVLTNLQEGDVLFIDEIHRLSPAI 119

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMEDF+LD+++G GP+A+++KI+L +FTLI ATTR G+++ PL+DRFG+  RL 
Sbjct: 120 EEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMISAPLRDRFGMDFRLQ 179

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY  E+L  IVQ  +   G      AA E+A RSR TPRIA RLL+R+RDFAEV     I
Sbjct: 180 FYTREELARIVQIASVKLGKECEKAAALEVAARSRATPRIALRLLKRIRDFAEVNDEAII 239

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           ++  A  AL  L ++ +GFD++D++YL ++       P+G+ TI+A LSE    +ED+IE
Sbjct: 240 SQPRAKEALDALGVNDIGFDEMDIKYLEILL-AAKRRPMGLSTIAAALSEDEGTVEDVIE 298

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           PY++  G+I+RT +GRL    A++   +
Sbjct: 299 PYLLANGYIERTAKGRLASAKAYEVFKL 326


>gi|313140260|ref|ZP_07802453.1| holliday junction ATP-dependent DNA helicase ruvB [Bifidobacterium
           bifidum NCIMB 41171]
 gi|313132770|gb|EFR50387.1| holliday junction ATP-dependent DNA helicase ruvB [Bifidobacterium
           bifidum NCIMB 41171]
          Length = 355

 Score =  328 bits (841), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 155/330 (46%), Positives = 223/330 (67%), Gaps = 1/330 (0%)

Query: 3   DREGLLSRNVSQEDAD-ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           D   ++S     ++      LRP  L+ F GQ    + L++F++AA+ R  A DH+L  G
Sbjct: 13  DSLRMVSATAINDEPISDEELRPHALDGFVGQPRLKAQLQLFLDAARKRDTAPDHILLAG 72

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA +VA EL V  R TSGP I  AGDLA++L++L+  +VLFIDEIHRL    
Sbjct: 73  PPGLGKTTLAMIVANELEVPIRITSGPAIQHAGDLASILSSLDAGEVLFIDEIHRLPRAA 132

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMEDF++D+MVG+GP A S+ + L RFT++ ATTR G+L +PL+ RFG    L+
Sbjct: 133 EELLYIAMEDFRVDVMVGKGPGASSIPLTLPRFTVVGATTREGMLPSPLRARFGFTAHLD 192

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY  ++L+ +++R + + G+++ + AA E+A+RSRGTPRIA RLLRRVRD+A V   + +
Sbjct: 193 FYPHDELEKLIERSSGVLGVSLGEGAAAELALRSRGTPRIANRLLRRVRDWAIVHDLQVV 252

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
             +   AAL    ID  G D+LD+  L  I RNF GGPVG+  ++A + E  + +E + E
Sbjct: 253 DVDDVRAALALYQIDSEGLDRLDIAVLNAIVRNFNGGPVGLNNLAAMVGEESETVETVCE 312

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           PY++++GF+ RTP+GR+    AW HLG++ 
Sbjct: 313 PYLVREGFLIRTPKGRVATAKAWSHLGLEP 342


>gi|283456063|ref|YP_003360627.1| Holliday junction DNA helicase ruvB [Bifidobacterium dentium Bd1]
 gi|283102697|gb|ADB09803.1| Holliday junction DNA helicase ruvB [Bifidobacterium dentium Bd1]
          Length = 357

 Score =  328 bits (841), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 156/332 (46%), Positives = 222/332 (66%), Gaps = 1/332 (0%)

Query: 3   DREGLLSRN-VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           +   ++S + V  E      LRP  L+ F GQ    + L++F++AA+ R    DH+L  G
Sbjct: 17  ESLRMVSASPVGNEPVSDEELRPHILDGFIGQPRLKAQLQLFLDAARKREVPPDHILLAG 76

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA +VA ELGV  R TSGP I  AGDLA++L++L+  +VLFIDEIHRL    
Sbjct: 77  PPGLGKTTLAMIVANELGVPIRVTSGPAIQHAGDLASILSSLDAGEVLFIDEIHRLPRAA 136

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMEDF++D+MVG+GP A S+ + L RFT+I ATTR G+L +PL+ RFG    L+
Sbjct: 137 EELLYIAMEDFRVDVMVGKGPGASSIPLTLPRFTVIGATTREGMLPSPLRARFGFTAHLD 196

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY  ++L+ +++R + + G+ + + +A ++AMRSRGTPRIA RLLRRVRD+A V   +++
Sbjct: 197 FYPHDELEKLIERSSVVLGVLLEEGSAHQLAMRSRGTPRIANRLLRRVRDWAIVHDLESV 256

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
             E    AL    ID  G D+LD+  L  I  NF GGPVG+  +SA + E  + +E + E
Sbjct: 257 HPEDVKQALALYQIDTEGLDRLDIAVLKAIVTNFSGGPVGLNNLSAMVGEESETVETVCE 316

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           PY++++GF+ RTP+GR+    AW+HLG+    
Sbjct: 317 PYLVREGFLIRTPKGRVATRKAWEHLGLRPDD 348


>gi|271967389|ref|YP_003341585.1| Holliday junction DNA helicase B [Streptosporangium roseum DSM
           43021]
 gi|270510564|gb|ACZ88842.1| Holliday junction DNA helicase B [Streptosporangium roseum DSM
           43021]
          Length = 352

 Score =  328 bits (841), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 157/331 (47%), Positives = 220/331 (66%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
            DR+ +       E    + LRP+ LEEF GQ      L + +++A  R    DHVL  G
Sbjct: 3   FDRDLVAPDAEGDERLIEAALRPKRLEEFIGQARVREQLSLVLQSALRRNRPPDHVLMSG 62

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
            PGLGKTTL+ ++A EL V  R TSGP + +AGDLAA+L+ L + +VLFIDEIHR++   
Sbjct: 63  GPGLGKTTLSMIIATELSVPLRITSGPALERAGDLAAILSTLSEGEVLFIDEIHRMARPA 122

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMEDF++D++VG+GP A ++ + ++ FTL+ ATTR GLL  PL+DRFG    + 
Sbjct: 123 EEMLYLAMEDFRVDIVVGKGPGATAIPLEVAPFTLVGATTRAGLLPAPLRDRFGFVAHME 182

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY++ +L+ ++ R ++L GL +  +AA EIA RSRGTPRIA RLLRRVRDFAEV     +
Sbjct: 183 FYDVAELEQVLHRSSRLLGLQLPGDAAHEIAGRSRGTPRIANRLLRRVRDFAEVRADGVV 242

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           TR++A AAL    +D  G D+LD   L  + R FGGGPVG+ T++  + E  + +E + E
Sbjct: 243 TRDVASAALNLYEVDAEGLDRLDRAVLGALLRKFGGGPVGLSTLAVAVGEEPETVEVVAE 302

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           P++++QG + RTPRGR+    AW HLG+  P
Sbjct: 303 PFLVRQGLLARTPRGRVATAAAWVHLGLTPP 333


>gi|157165204|ref|YP_001467229.1| Holliday junction DNA helicase B [Campylobacter concisus 13826]
 gi|166231475|sp|A7ZEM1|RUVB_CAMC1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|112801915|gb|EAT99259.1| holliday junction DNA helicase RuvB [Campylobacter concisus 13826]
          Length = 336

 Score =  328 bits (841), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 166/331 (50%), Positives = 232/331 (70%), Gaps = 2/331 (0%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MDR   + +   + D ++S LRP   E++ GQ +   NL VFI+AAK R E LDHVLF G
Sbjct: 1   MDRIVEIEKVSFENDFEVS-LRPSKFEDYIGQEKIKQNLDVFIKAAKKRNECLDHVLFYG 59

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+GV+ + T+ P+I K+GDLAA+LTNL++ DVLFIDEIHRLS  +
Sbjct: 60  PPGLGKTTLAHIIANEMGVSIKMTAAPMIEKSGDLAAILTNLQEGDVLFIDEIHRLSPAI 119

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMEDF+LD+++G GP+A+++KI+L +FTLI ATTR G+++ PL+DRFG+  RL 
Sbjct: 120 EEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMISAPLRDRFGMDFRLQ 179

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY   +L  IVQ  +   G      A+ EIA RSR TPRIA RLL+R+RDFAEV   + I
Sbjct: 180 FYTSSELSRIVQIASAKLGKECDKNASLEIAKRSRATPRIALRLLKRIRDFAEVNDEQII 239

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           + E A   L  L ++ +GFD++D+RYL ++ +     P+G+ TI+A LSE    +ED+IE
Sbjct: 240 SHERAKEGLNALGVNSLGFDEMDIRYLEILMQA-RRRPMGLSTIAAALSEDEGTVEDVIE 298

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           PY++  GFI+RT +GR+     ++   + I 
Sbjct: 299 PYLLANGFIERTAKGRIASAKCFETFNVKID 329


>gi|306822726|ref|ZP_07456104.1| crossover junction ATP-dependent DNA helicase RuvB [Bifidobacterium
           dentium ATCC 27679]
 gi|309801011|ref|ZP_07695143.1| Holliday junction DNA helicase RuvB [Bifidobacterium dentium
           JCVIHMP022]
 gi|304554271|gb|EFM42180.1| crossover junction ATP-dependent DNA helicase RuvB [Bifidobacterium
           dentium ATCC 27679]
 gi|308222547|gb|EFO78827.1| Holliday junction DNA helicase RuvB [Bifidobacterium dentium
           JCVIHMP022]
          Length = 362

 Score =  328 bits (841), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 156/332 (46%), Positives = 222/332 (66%), Gaps = 1/332 (0%)

Query: 3   DREGLLSRN-VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           +   ++S + V  E      LRP  L+ F GQ    + L++F++AA+ R    DH+L  G
Sbjct: 22  ESLRMVSASPVGNEPVSDEELRPHILDGFIGQPRLKAQLQLFLDAARKREVPPDHILLAG 81

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA +VA ELGV  R TSGP I  AGDLA++L++L+  +VLFIDEIHRL    
Sbjct: 82  PPGLGKTTLAMIVANELGVPIRVTSGPAIQHAGDLASILSSLDAGEVLFIDEIHRLPRAA 141

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMEDF++D+MVG+GP A S+ + L RFT+I ATTR G+L +PL+ RFG    L+
Sbjct: 142 EELLYIAMEDFRVDVMVGKGPGASSIPLTLPRFTVIGATTREGMLPSPLRARFGFTAHLD 201

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY  ++L+ +++R + + G+ + + +A ++AMRSRGTPRIA RLLRRVRD+A V   +++
Sbjct: 202 FYPHDELEKLIERSSAVLGVLLEEGSAHQLAMRSRGTPRIANRLLRRVRDWAIVHDLESV 261

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
             E    AL    ID  G D+LD+  L  I  NF GGPVG+  +SA + E  + +E + E
Sbjct: 262 HPEDVKQALALYQIDTEGLDRLDIAVLKAIVTNFSGGPVGLNNLSAMVGEESETVETVCE 321

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           PY++++GF+ RTP+GR+    AW+HLG+    
Sbjct: 322 PYLVREGFLIRTPKGRVATRKAWEHLGLRPDD 353


>gi|310287479|ref|YP_003938737.1| Holliday junction DNA helicase RuvB [Bifidobacterium bifidum S17]
 gi|309251415|gb|ADO53163.1| Holliday junction DNA helicase RuvB [Bifidobacterium bifidum S17]
          Length = 361

 Score =  328 bits (840), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 155/330 (46%), Positives = 223/330 (67%), Gaps = 1/330 (0%)

Query: 3   DREGLLSRNVSQEDAD-ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           D   ++S     ++      LRP  L+ F GQ    + L++F++AA+ R  A DH+L  G
Sbjct: 19  DSLRMVSAAAINDEPISDEELRPHALDGFVGQPRLKAQLQLFLDAARKRDTAPDHILLAG 78

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA +VA EL V  R TSGP I  AGDLA++L++L+  +VLFIDEIHRL    
Sbjct: 79  PPGLGKTTLAMIVANELEVPIRITSGPAIQHAGDLASILSSLDAGEVLFIDEIHRLPRAA 138

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMEDF++D+MVG+GP A S+ + L RFT++ ATTR G+L +PL+ RFG    L+
Sbjct: 139 EELLYIAMEDFRVDVMVGKGPGASSIPLTLPRFTVVGATTREGMLPSPLRARFGFTAHLD 198

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY  ++L+ +++R + + G+++ + AA E+A+RSRGTPRIA RLLRRVRD+A V   + +
Sbjct: 199 FYPHDELEKLIERSSGVLGVSLGEGAAAELALRSRGTPRIANRLLRRVRDWAIVHDLQVV 258

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
             +   AAL    ID  G D+LD+  L  I RNF GGPVG+  ++A + E  + +E + E
Sbjct: 259 DVDDVRAALALYQIDSEGLDRLDIAVLNAIVRNFNGGPVGLNNLAAMVGEESETVETVCE 318

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           PY++++GF+ RTP+GR+    AW HLG++ 
Sbjct: 319 PYLVREGFLIRTPKGRVATAKAWSHLGLEP 348


>gi|218780991|ref|YP_002432309.1| Holliday junction DNA helicase RuvB [Desulfatibacillum alkenivorans
           AK-01]
 gi|218762375|gb|ACL04841.1| Holliday junction DNA helicase RuvB [Desulfatibacillum alkenivorans
           AK-01]
          Length = 349

 Score =  328 bits (840), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 160/322 (49%), Positives = 213/322 (66%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
            + + +  ++  LRP  L+E+ GQ +A   L++ IEAA AR EALDH LF GPPGLGKTT
Sbjct: 21  ESPADQTPELISLRPERLDEYIGQKDAVETLQIAIEAALARNEALDHTLFHGPPGLGKTT 80

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           LA ++A ELG     TSGP + K GDL  LLT+LE++DVLF+DEIHRL   VEE+LYPAM
Sbjct: 81  LAHIIANELGSRLTVTSGPALEKGGDLLGLLTHLEEKDVLFVDEIHRLPKTVEELLYPAM 140

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           EDF +D +  +G  ARS +  L  F L+ ATTRVGLL+ PL+DRFGI   L+FYE  DL 
Sbjct: 141 EDFAVDFIFDKGMHARSHRYRLKNFVLVGATTRVGLLSAPLRDRFGIFRNLDFYEEPDLI 200

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            I +R A L  + + +E A E+A RSRGTPRI  RLL+RVRD+A+V     I ++    +
Sbjct: 201 KIARRSALLLNVEMDNEGALELARRSRGTPRIVNRLLKRVRDYAQVRSHGRIDKKTVSES 260

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           L    +D++G    D RYL  I   +GGGPVGIE I+A + E  D + D++EP++++ GF
Sbjct: 261 LALEGVDEIGLTNQDRRYLETIINFYGGGPVGIEAIAATIQEESDTLVDVVEPFLLKIGF 320

Query: 310 IQRTPRGRLLMPIAWQHLGIDI 331
           + RT  GR     A++HLGI  
Sbjct: 321 LMRTSSGRKASEAAYKHLGIAY 342


>gi|190571379|ref|YP_001975737.1| Holliday junction DNA helicase RuvB [Wolbachia endosymbiont of
           Culex quinquefasciatus Pel]
 gi|213018778|ref|ZP_03334586.1| Holliday junction DNA helicase RuvB [Wolbachia endosymbiont of
           Culex quinquefasciatus JHB]
 gi|238058358|sp|B3CMH5|RUVB_WOLPP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|190357651|emb|CAQ55095.1| Holliday junction DNA helicase RuvB [Wolbachia endosymbiont of
           Culex quinquefasciatus Pel]
 gi|212995729|gb|EEB56369.1| Holliday junction DNA helicase RuvB [Wolbachia endosymbiont of
           Culex quinquefasciatus JHB]
          Length = 329

 Score =  328 bits (840), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 184/317 (58%), Positives = 238/317 (75%), Gaps = 2/317 (0%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
            ED     +RP  L++F GQ +   NLKVFI AA+ RAEALDHVL  GPPGLGKTTLAQ+
Sbjct: 11  SEDVRNLNIRPEQLDDFVGQKDLIQNLKVFINAAQTRAEALDHVLLYGPPGLGKTTLAQI 70

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           V++EL V+FR+TSGP+++KAGDLAA+LT L  +DVLFIDEIHRL+  +EE+LY AMEDF 
Sbjct: 71  VSKELRVSFRATSGPLLSKAGDLAAVLTTLNAKDVLFIDEIHRLNRSIEEVLYTAMEDFC 130

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           LD++VGEGPS R+++I+L  FTLI ATTR+GLL+ PL+DRFGIP+ L FY  E+L  I++
Sbjct: 131 LDILVGEGPSTRTLRIDLPPFTLIGATTRLGLLSAPLRDRFGIPLHLEFYSFEELVDIIK 190

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           RGA++    +  +A  EIA R+RGTPRIA RLLRR+RDF EV   K IT EIA +AL +L
Sbjct: 191 RGARVLCAEIEKDAVQEIACRARGTPRIALRLLRRIRDFVEVKDDKKITCEIAGSALSKL 250

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            IDKMG ++LD+ YL  +      GPVGI+TIS  LSE    IE+ +EPY+I+  F++RT
Sbjct: 251 GIDKMGLNKLDMDYLRFLFNT--SGPVGIDTISIALSEDVGNIEETVEPYLIKVSFVKRT 308

Query: 314 PRGRLLMPIAWQHLGID 330
           PRGR+L   A ++L I+
Sbjct: 309 PRGRVLTDQAREYLSIN 325


>gi|171742915|ref|ZP_02918722.1| hypothetical protein BIFDEN_02032 [Bifidobacterium dentium ATCC
           27678]
 gi|171278529|gb|EDT46190.1| hypothetical protein BIFDEN_02032 [Bifidobacterium dentium ATCC
           27678]
          Length = 362

 Score =  327 bits (839), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 156/332 (46%), Positives = 222/332 (66%), Gaps = 1/332 (0%)

Query: 3   DREGLLSRN-VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           +   ++S + V  E      LRP  L+ F GQ    + L++F++AA+ R    DH+L  G
Sbjct: 22  ESLRMVSASPVGNEPVSDEELRPHILDGFIGQPRLKAQLQLFLDAARKREVPPDHILLAG 81

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA +VA ELGV  R TSGP I  AGDLA++L++L+  +VLFIDEIHRL    
Sbjct: 82  PPGLGKTTLAMIVANELGVPIRVTSGPAIQHAGDLASILSSLDAGEVLFIDEIHRLPRAA 141

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMEDF++D+MVG+GP A S+ + L RFT+I ATTR G+L +PL+ RFG    L+
Sbjct: 142 EELLYIAMEDFRVDVMVGKGPGASSIPLTLPRFTVIGATTREGMLPSPLRARFGFTAHLD 201

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY  ++L+ +++R + + G+ + + +A ++AMRSRGTPRIA RLLRRVRD+A V   +++
Sbjct: 202 FYPHDELEKLIERSSVVLGVLLEEGSAHQLAMRSRGTPRIANRLLRRVRDWAIVHDLESV 261

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
             E    AL    ID  G D+LD+  L  I  NF GGPVG+  +SA + E  + +E + E
Sbjct: 262 HPEDVKQALALYQIDTEGLDRLDIAVLKAIVTNFSGGPVGLNNLSAMVGEESETVETVCE 321

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           PY++++GF+ RTP+GR+    AW+HLG+    
Sbjct: 322 PYLVREGFLIRTPKGRVATRKAWEHLGLRPDD 353


>gi|270284161|ref|ZP_05965649.2| holliday junction DNA helicase RuvB [Bifidobacterium gallicum DSM
           20093]
 gi|270277218|gb|EFA23072.1| holliday junction DNA helicase RuvB [Bifidobacterium gallicum DSM
           20093]
          Length = 356

 Score =  327 bits (839), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 160/333 (48%), Positives = 222/333 (66%), Gaps = 5/333 (1%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MM    L +  VS E+     LRP  L  F GQ    + L++F++AA+ R    DH+L  
Sbjct: 19  MMSAAPLGNEPVSDEE-----LRPHVLAGFIGQPTLKAQLQLFLDAARKRDVPPDHILLA 73

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA +VA ELGV  R TSGP I  AGDLA++L++L+  +VLFIDEIHRL   
Sbjct: 74  GPPGLGKTTLAMIVANELGVPIRVTSGPAIQHAGDLASILSSLDAGEVLFIDEIHRLPRA 133

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            EE+LY AMEDF++D+MVG+GP A S+ + L RFT+I ATTR G+L +PL+ RFG    L
Sbjct: 134 AEELLYIAMEDFRVDVMVGKGPGASSIPLTLPRFTVIGATTREGMLPSPLRARFGFTAHL 193

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           +FY  ++L+ +++R A + GL +   A+ ++++RSRGTPRIA RLLRRVRD+A V     
Sbjct: 194 DFYPADELRKLIERSAAVLGLELEQGASQQLSLRSRGTPRIANRLLRRVRDWAIVHDLPQ 253

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +  +    AL    ID  G D+LD+  LT I + F GGPVG+  +SA + E  + +E + 
Sbjct: 254 VRADDVCEALALYQIDTEGLDRLDIAVLTAIVKQFNGGPVGLNNLSAMVGEEAETVETVC 313

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           EPY++++GF+ RTP+GR+    AWQHLG+ +P 
Sbjct: 314 EPYLVREGFLIRTPKGRVATQKAWQHLGLTMPD 346


>gi|254457038|ref|ZP_05070466.1| Holliday junction DNA helicase RuvB [Campylobacterales bacterium GD
           1]
 gi|207085830|gb|EDZ63114.1| Holliday junction DNA helicase RuvB [Campylobacterales bacterium GD
           1]
          Length = 337

 Score =  327 bits (839), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 168/332 (50%), Positives = 230/332 (69%), Gaps = 1/332 (0%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MDR   +    ++E++    LRP    E+ GQ +   NL VFIEA+K R EALDHVLF G
Sbjct: 1   MDRLVEIETFSTEEESAEVTLRPDAWGEYIGQEQIKKNLGVFIEASKKRDEALDHVLFYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+  N + T+ P+I K+GDLAA+LTNLE+ D+LFIDEIHRLS  V
Sbjct: 61  PPGLGKTTLALIIANEMSANIKVTAAPMIEKSGDLAAILTNLEEGDILFIDEIHRLSPAV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EEILY +MEDF++D+++G GP+A++VKI+L RFTLI ATTR G+L+NPL+DRFG+  R+ 
Sbjct: 121 EEILYSSMEDFRIDIIIGSGPAAQTVKIDLPRFTLIGATTRAGMLSNPLRDRFGMSFRMQ 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY  ++L  I+ + +      +  EA+ EIA RSRGTPRIA RLLRRVRDFAEVA   +I
Sbjct: 181 FYSSDELAKIIVQASVKLDKEIIHEASVEIAKRSRGTPRIALRLLRRVRDFAEVAEEMSI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
                  AL +L I+  GFD++D+R L ++     G  +G+ TI+A LSE    +ED++E
Sbjct: 241 NHSRTQYALDQLGINSHGFDEMDIRLLNLLV-AANGRAMGLSTIAAALSEDEGTVEDVLE 299

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           PY+I  G+++RT +GR      ++ L I + H
Sbjct: 300 PYLIANGYLERTAKGRKATRSTYEVLNISMTH 331


>gi|58698306|ref|ZP_00373223.1| Holliday junction DNA helicase RuvB [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|225630964|ref|YP_002727755.1| Holliday junction DNA helicase RuvB [Wolbachia sp. wRi]
 gi|254767451|sp|C0R4X2|RUVB_WOLWR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|58535179|gb|EAL59261.1| Holliday junction DNA helicase RuvB [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|225592945|gb|ACN95964.1| Holliday junction DNA helicase RuvB [Wolbachia sp. wRi]
          Length = 324

 Score =  327 bits (839), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 182/315 (57%), Positives = 239/315 (75%), Gaps = 2/315 (0%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           ED     +RP  L++F GQ +   NLKVFI AA+ R EALDHVL  GPPGLGKTTLAQ+V
Sbjct: 12  EDVRNINIRPEQLDDFVGQKDLIQNLKVFINAAQTRTEALDHVLLYGPPGLGKTTLAQIV 71

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           ++EL V+FR+TSGP+++KAGDLAA+LT L  +DVLFIDEIHRL+  +EE+LY AMEDF L
Sbjct: 72  SKELRVSFRATSGPLLSKAGDLAAVLTTLNAKDVLFIDEIHRLNRSIEEVLYTAMEDFCL 131

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D++VGEGPS R+++I+L  FTLI ATTR+GLL+ PL+DRFGIP+ L FY  E+L  I++R
Sbjct: 132 DILVGEGPSTRTLRIDLPPFTLIGATTRLGLLSAPLRDRFGIPLHLEFYSFEELVNIIKR 191

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
           GA++    + ++AA EIA R+RGTPRIA RLLRR+RDF EV   K IT E+AD+ LL+L 
Sbjct: 192 GARVLSAEIEEDAAREIACRARGTPRIALRLLRRIRDFVEVKDDKKITYEVADSVLLKLG 251

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +DKMG ++LD+ YL  +      GPVGI+TIS  LSE    IE+ +EPY+I+  F++RTP
Sbjct: 252 VDKMGLNKLDMNYLRFLFNT--SGPVGIDTISIALSEDVGNIEETVEPYLIKISFVKRTP 309

Query: 315 RGRLLMPIAWQHLGI 329
           RGR+L   A ++L +
Sbjct: 310 RGRVLTDQAKEYLSL 324


>gi|34558125|ref|NP_907940.1| Holliday junction DNA helicase RuvB [Wolinella succinogenes DSM
           1740]
 gi|44888364|sp|Q7M879|RUVB_WOLSU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|34483843|emb|CAE10840.1| HOLLIDAY JUNCTION DNA HELICASE [Wolinella succinogenes]
          Length = 335

 Score =  327 bits (839), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 164/310 (52%), Positives = 222/310 (71%), Gaps = 1/310 (0%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            LRP   +++ GQ +   NL VFIEAAK R E LDH+LF GPPGLGKTTLA +++ E+G 
Sbjct: 19  SLRPSGWDDYIGQEKIKRNLGVFIEAAKRRGEGLDHILFFGPPGLGKTTLAHIISHEMGA 78

Query: 81  NFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           N + T+ P+I KAGDLAA+LTNL + D+LFIDEIHRLS  +EEILYPAMEDF+LD+++G 
Sbjct: 79  NIKVTTAPMIEKAGDLAAILTNLSEGDILFIDEIHRLSASIEEILYPAMEDFRLDIIIGS 138

Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
           GP+A++VKI+L RFTLI ATTR G+++ PL++RFG+   + FY IE+L  I+   +    
Sbjct: 139 GPAAQTVKIDLPRFTLIGATTRAGMISKPLRERFGMNFWMQFYNIEELSQIITLASIKLK 198

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGF 260
                E+A EIA RSRGTPR+A RLLRRVRDFAEVA+ + I  E A  AL  L ++  GF
Sbjct: 199 KRCLLESAKEIARRSRGTPRVALRLLRRVRDFAEVANEEEIKIEQARYALHELGVNDHGF 258

Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320
           D LDLRYL ++ ++  G PVG+ TI+A +SE    IED++EPY++  G+++RT RGR+  
Sbjct: 259 DDLDLRYLRILVQS-KGRPVGLGTIAAAMSEDEGTIEDVVEPYLLAHGYLERTARGRVAT 317

Query: 321 PIAWQHLGID 330
              ++   + 
Sbjct: 318 RQTYELFSLP 327


>gi|308177526|ref|YP_003916932.1| Holliday junction ATP-dependent DNA helicase RuvB [Arthrobacter
           arilaitensis Re117]
 gi|307744989|emb|CBT75961.1| Holliday junction ATP-dependent DNA helicase RuvB [Arthrobacter
           arilaitensis Re117]
          Length = 349

 Score =  327 bits (839), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 160/334 (47%), Positives = 221/334 (66%), Gaps = 1/334 (0%)

Query: 1   MMDREGLLSR-NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M D  GL S  +  +E    + LRPR L++F GQ      L + +EAAK R    DHVL 
Sbjct: 1   MNDSTGLTSAGSEPEERVIEAALRPRNLDDFVGQSRVRQQLSLVLEAAKIRERTADHVLL 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTL+ ++A E+    R +SGP I  AGDLAA+L++L + +VLF+DEIHR+S 
Sbjct: 61  SGPPGLGKTTLSMIIAAEMNAPLRISSGPAIQHAGDLAAILSSLSEGEVLFLDEIHRMSR 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
             EE+LY AMEDF++D++VG+G  A ++ + L  FTL+ ATTR GLL  PL+DRFG    
Sbjct: 121 PAEEMLYMAMEDFRVDIIVGKGAGATAIPLELPPFTLVGATTRAGLLPGPLRDRFGFTGH 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY +++L+ +++R A +  L+VT  A  EIA RSRGTPRIA RLLRRVRD+A V   +
Sbjct: 181 LEFYAVKELELVLRRSAMMLDLSVTSAAFTEIAGRSRGTPRIANRLLRRVRDWALVHKLE 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  + A AAL    +D  G D+LD   L  +   FGGGPVG+ T++  + E  + +E +
Sbjct: 241 EIDAKAAAAALDMYEVDARGLDRLDRGVLEALCTKFGGGPVGLSTLAIAVGEETETVETV 300

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            EPY++++G + RTPRGR+ MP AW+HLG+ +P 
Sbjct: 301 AEPYLVREGLMGRTPRGRIAMPGAWEHLGLAMPK 334


>gi|42520917|ref|NP_966832.1| Holliday junction DNA helicase B [Wolbachia endosymbiont of
           Drosophila melanogaster]
 gi|47606092|sp|P61539|RUVB_WOLPM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|42410658|gb|AAS14766.1| Holliday junction DNA helicase RuvB [Wolbachia endosymbiont of
           Drosophila melanogaster]
          Length = 326

 Score =  327 bits (838), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 182/313 (58%), Positives = 238/313 (76%), Gaps = 2/313 (0%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           ED     +RP  L++F GQ +   NLKVFI AA+ R EALDHVL  GPPGLGKTTLAQ+V
Sbjct: 12  EDVRNINIRPEQLDDFVGQKDLIQNLKVFINAAQTRTEALDHVLLYGPPGLGKTTLAQIV 71

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           ++EL V+FR+TSGP+++KAGDLAA+LT L  +DVLFIDEIHRL+  +EE+LY AMEDF L
Sbjct: 72  SKELRVSFRATSGPLLSKAGDLAAVLTTLNAKDVLFIDEIHRLNRSIEEVLYTAMEDFCL 131

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D++VGEGPS R+++I+L  FTLI ATTR+GLL+ PL+DRFGIP+ L FY  E+L  I++R
Sbjct: 132 DILVGEGPSTRTLRIDLPPFTLIGATTRLGLLSAPLRDRFGIPLHLEFYSFEELVNIIKR 191

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
           GA++    + ++AA EIA R+RGTPRIA RLLRR+RDF EV   K IT E+AD+ LL+L 
Sbjct: 192 GARVLSAEIEEDAAREIACRARGTPRIALRLLRRIRDFVEVKDDKKITYEVADSVLLKLG 251

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +DKMG ++LD+ YL  +      GPVGI+TIS  LSE    IE+ +EPY+I+  F++RTP
Sbjct: 252 VDKMGLNKLDMNYLRFLFNT--SGPVGIDTISIALSEDVGNIEETVEPYLIKISFVKRTP 309

Query: 315 RGRLLMPIAWQHL 327
           RGR+L   A ++L
Sbjct: 310 RGRVLTDQAKEYL 322


>gi|282855629|ref|ZP_06264943.1| holliday junction DNA helicase RuvB [Pyramidobacter piscolens
           W5455]
 gi|282586559|gb|EFB91813.1| holliday junction DNA helicase RuvB [Pyramidobacter piscolens
           W5455]
          Length = 347

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 175/338 (51%), Positives = 227/338 (67%), Gaps = 6/338 (1%)

Query: 2   MDREGLLSR------NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALD 55
           MD+E +            +E  D   LRP  L +F GQ E  S L+V+I+AAK R EALD
Sbjct: 1   MDKENIRRGFDLPPLEELKEREDERGLRPLRLSDFNGQTEIKSKLEVYIQAAKKREEALD 60

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIH 115
           H+LF GPPGLGKTTLA ++A E+    R T+GP + K GDLAA+L+NL+D DVLFIDEIH
Sbjct: 61  HLLFYGPPGLGKTTLAGIIAHEMNSELRVTTGPALEKPGDLAAILSNLQDHDVLFIDEIH 120

Query: 116 RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
           R+S  +EE+LY AMEDF L ++VG+GP ARS+ +NL  FTL+ ATTR+GLL+ PL+ RFG
Sbjct: 121 RMSTTIEEVLYSAMEDFTLHIIVGKGPLARSICLNLPHFTLVGATTRLGLLSAPLRARFG 180

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
           I  +L  Y  E+L  I+ RGA +  + V  +A   IA RSRGTPRIA RLLRRVRDFAEV
Sbjct: 181 IVEQLRLYTPEELCVILDRGAGVMNMKVEPDARRAIANRSRGTPRIALRLLRRVRDFAEV 240

Query: 236 AHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDA 295
           A   T+   +A+ A+  L +D +G D  D + L  I   F GGPVG+ T++A L+E    
Sbjct: 241 AGVPTVEAALAERAMDTLGLDGLGLDDGDRKILDAIVSLFDGGPVGLSTLAAALNEEPQT 300

Query: 296 IEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           IED+ EPY+IQ+G I+RTPRGR     A+++LG   P 
Sbjct: 301 IEDIYEPYLIQKGMIERTPRGRKATENAYRYLGKTPPQ 338


>gi|32266005|ref|NP_860037.1| Holliday junction DNA helicase RuvB [Helicobacter hepaticus ATCC
           51449]
 gi|44888425|sp|Q7VIU8|RUVB_HELHP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|32262054|gb|AAP77103.1| holliday junction DNA helicase RuvB [Helicobacter hepaticus ATCC
           51449]
          Length = 336

 Score =  327 bits (837), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 168/323 (52%), Positives = 230/323 (71%), Gaps = 8/323 (2%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E      LRP   EE+ GQ +   NLKVFIEA+K R E LDH+LF GPPGLGKTTL+ ++
Sbjct: 7   ESVQELSLRPNVWEEYIGQEKIKKNLKVFIEASKKRKECLDHILFFGPPGLGKTTLSHII 66

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A E+G N + ++ P+I K+GDLAA+LTNL + D+LFIDEIHRLS  +EEILYPAMEDF+L
Sbjct: 67  AHEMGCNIKVSAAPMIEKSGDLAAILTNLNEGDILFIDEIHRLSPAIEEILYPAMEDFRL 126

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D+++G GP+A+++KI+L+ FTLI ATTR G+L+NPL+DRFG+  RL FYE ++L  IV  
Sbjct: 127 DIIIGSGPAAQTLKIDLAPFTLIGATTRAGMLSNPLRDRFGMSFRLQFYEPKELSAIVIC 186

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV-------AHAKTITREIAD 247
            +   G +++   A EIA RSRGTPRIA RLLRRVRDFA+V        +   I+ E   
Sbjct: 187 ASSKLGRSLSKSGADEIARRSRGTPRIALRLLRRVRDFADVGEYAQDMRNQSEISLECVR 246

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
            AL  L ++++GFD+LDLRYL ++A +  G  +G+ TI+A +SE    IED+IEPY++  
Sbjct: 247 YALNELGVNELGFDELDLRYLAILAES-RGKAIGLNTIAAAMSEDEATIEDVIEPYLLAN 305

Query: 308 GFIQRTPRGRLLMPIAWQHLGID 330
           G+++RT +GR+  P  ++ L I 
Sbjct: 306 GYLERTAKGRVASPKTYELLHIP 328


>gi|154174013|ref|YP_001408691.1| Holliday junction DNA helicase RuvB [Campylobacter curvus 525.92]
 gi|166231476|sp|A7GZP9|RUVB_CAMC5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|112802406|gb|EAT99750.1| holliday junction DNA helicase RuvB [Campylobacter curvus 525.92]
          Length = 338

 Score =  327 bits (837), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 163/328 (49%), Positives = 227/328 (69%), Gaps = 2/328 (0%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MDR   + + VS E      LRP + +++ GQ +   NL VFI+AAK R E LDHVLF G
Sbjct: 1   MDRIVEIEK-VSFESEFEVSLRPSSFDDYIGQEKIKQNLDVFIKAAKKRGECLDHVLFYG 59

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+ V+ + T+ P+I K+GDLAA+LTNL++ DVLFIDEIHRLS  +
Sbjct: 60  PPGLGKTTLAHIIANEMAVSIKMTAAPMIEKSGDLAAILTNLQEGDVLFIDEIHRLSPAI 119

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMEDF+LD+++G GP+A+++KI+L +FTLI ATTR G+++ PL+DRFG+  RL 
Sbjct: 120 EEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMISAPLRDRFGMDFRLQ 179

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY   +L  I+Q  +   G      AA EIA R+R TPRIA RLL+R+RDFAEV     I
Sbjct: 180 FYSTAELSRIIQIASVKLGKECDKAAALEIAKRARATPRIALRLLKRIRDFAEVNDEAMI 239

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           + E A   L  L ++ +GFD++D++YL ++       P+G+ TI+A LSE    +ED+IE
Sbjct: 240 SHERAKEGLNALGVNSLGFDEMDIKYLEILLDA-KRRPLGLSTIAAALSEDEGTVEDVIE 298

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           PY++  GFI+RT +GR+     ++   I
Sbjct: 299 PYLLANGFIERTAKGRIASEKCFETFKI 326


>gi|15618305|ref|NP_224590.1| Holliday junction DNA helicase RuvB [Chlamydophila pneumoniae
           CWL029]
 gi|33241735|ref|NP_876676.1| Holliday junction DNA helicase B [Chlamydophila pneumoniae TW-183]
 gi|4376668|gb|AAD18533.1| Holliday Junction Helicase [Chlamydophila pneumoniae CWL029]
 gi|33236244|gb|AAP98333.1| Holliday junction DNA helicase [Chlamydophila pneumoniae TW-183]
          Length = 337

 Score =  327 bits (837), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 148/316 (46%), Positives = 206/316 (65%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           + Q+      LRP+ LEEF GQ      L +F+ AA  R E   H LF GPPGLGKT+LA
Sbjct: 8   LHQDKKFDVSLRPKGLEEFYGQHHLKERLDLFLCAALQRGEVPGHCLFFGPPGLGKTSLA 67

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            +VA  +G      SGP + K  DL  LLT+L++ DV FIDEIHR+  + EE LY AMED
Sbjct: 68  HIVAYTVGKGLVLASGPQLIKPSDLLGLLTSLQEGDVFFIDEIHRMGKVAEEYLYSAMED 127

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F++D+ +  GP ARSV+++L+ FTL+ ATTR G+L+ PL+ RF    RL++Y  +DLK I
Sbjct: 128 FKVDITIDSGPGARSVRVDLAPFTLVGATTRSGMLSEPLRARFAFSARLSYYSDQDLKEI 187

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           + R + L G+     A  EIA RSRGTPR+A  LLR VRDFA++     I  ++A+ AL 
Sbjct: 188 LVRSSHLLGIEADSSALLEIAKRSRGTPRLANHLLRWVRDFAQIREGNCINGDVAEKALA 247

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L ID  G +++D++ LT I   + GGPVGI+T+S  + E    +ED+ EP++I +GFI+
Sbjct: 248 MLLIDDWGLNEIDIKLLTTIIDYYQGGPVGIKTLSVAVGEDIKTLEDVYEPFLILKGFIK 307

Query: 312 RTPRGRLLMPIAWQHL 327
           +TPRGR++  +A+ HL
Sbjct: 308 KTPRGRMVTQLAYDHL 323


>gi|99035954|ref|ZP_01314999.1| hypothetical protein Wendoof_01000160 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 326

 Score =  327 bits (837), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 181/313 (57%), Positives = 238/313 (76%), Gaps = 2/313 (0%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           ED     +RP  L++F GQ +   NLKVFI AA+ R EALDHVL  GPPGLGKTTLAQ+V
Sbjct: 12  EDVRNINIRPEQLDDFVGQKDLIQNLKVFINAAQTRTEALDHVLLYGPPGLGKTTLAQIV 71

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           ++EL V+FR+TSGP+++KAGDLAA+LT L  +DVLFIDEIHRL+  +EE+LY AMEDF L
Sbjct: 72  SKELRVSFRATSGPLLSKAGDLAAVLTTLNAKDVLFIDEIHRLNRSIEEVLYTAMEDFCL 131

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D++VGEGPS R+++I+L  FTLI ATT++GLL+ PL+DRFGIP+ L FY  E+L  I++R
Sbjct: 132 DILVGEGPSTRTLRIDLPPFTLIGATTQLGLLSAPLRDRFGIPLHLEFYSFEELVNIIKR 191

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
           GA++    + ++AA EIA R+RGTPRIA RLLRR+RDF EV   K IT E+AD+ LL+L 
Sbjct: 192 GARVLSAEIEEDAAREIACRARGTPRIALRLLRRIRDFVEVKDDKKITYEVADSVLLKLG 251

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +DKMG ++LD+ YL  +      GPVGI+TIS  LSE    IE+ +EPY+I+  F++RTP
Sbjct: 252 VDKMGLNKLDMNYLRFLFNT--SGPVGIDTISIALSEDVGNIEETVEPYLIKISFVKRTP 309

Query: 315 RGRLLMPIAWQHL 327
           RGR+L   A ++L
Sbjct: 310 RGRVLTDQAKEYL 322


>gi|326382128|ref|ZP_08203820.1| Holliday junction DNA helicase RuvB [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326198858|gb|EGD56040.1| Holliday junction DNA helicase RuvB [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 364

 Score =  327 bits (837), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 158/329 (48%), Positives = 219/329 (66%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           E L +  +  +    + LRP  L  F GQ      L++ + AA+AR    DH+L  GPPG
Sbjct: 15  EFLTAGPLDGDRDLDASLRPSDLGSFIGQPRVREQLELVLHAARARGRTPDHILLSGPPG 74

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKT+LA ++A E+G   R TSGP + +AGDLAA+L+NL D DVLFIDEIHR++   EE+
Sbjct: 75  LGKTSLAMIIAAEMGAAIRITSGPALERAGDLAAMLSNLVDGDVLFIDEIHRIARPAEEM 134

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LY AMEDF++D++VG+GP A S+ ++++ FTL+ ATTR G LT PL+DRFG    + FYE
Sbjct: 135 LYLAMEDFRVDVVVGKGPGATSIPLDVAPFTLVGATTRSGALTGPLRDRFGFTAHMEFYE 194

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
             +L  +++R A + G+A+ D+AA E+A RSRGTPRIA RLLRRVRD+AEV     +   
Sbjct: 195 TGELVRVIKRSATILGIAIDDDAASEVAGRSRGTPRIANRLLRRVRDYAEVRGDGRVDLA 254

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
            A AAL    +D++G D+LD   L  + R FGGGPVG+ T++  + E    +E++ EP++
Sbjct: 255 AARAALAVYDVDELGLDRLDRAVLGALVRGFGGGPVGVSTLAVAVGEEPATVEEVCEPFL 314

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           ++ G I RTPRGRL    AW HLG+  P 
Sbjct: 315 VRAGMIARTPRGRLATASAWHHLGLTPPE 343


>gi|15835923|ref|NP_300447.1| Holliday junction DNA helicase B [Chlamydophila pneumoniae J138]
 gi|16752648|ref|NP_444913.1| Holliday junction DNA helicase B [Chlamydophila pneumoniae AR39]
 gi|12644499|sp|Q9Z8F3|RUVB_CHLPN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|7189290|gb|AAF38214.1| Holliday junction DNA helicase RuvB [Chlamydophila pneumoniae AR39]
 gi|8978762|dbj|BAA98598.1| holliday junction helicase [Chlamydophila pneumoniae J138]
          Length = 337

 Score =  327 bits (837), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 148/316 (46%), Positives = 206/316 (65%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           + Q+      LRP+ LEEF GQ      L +F+ AA  R E   H LF GPPGLGKT+LA
Sbjct: 8   LHQDKKFDVSLRPKGLEEFYGQHHLKERLDLFLCAALQRGEVPGHCLFFGPPGLGKTSLA 67

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            +VA  +G      SGP + K  DL  LLT+L++ DV FIDEIHR+  + EE LY AMED
Sbjct: 68  HIVAYTVGKGLVLASGPQLIKPSDLLGLLTSLQEGDVFFIDEIHRMGKVAEEYLYSAMED 127

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F++D+ +  GP ARSV+++L+ FTL+ ATTR G+L+ PL+ RF    RL++Y  +DLK I
Sbjct: 128 FKVDITIDSGPGARSVRVDLAPFTLVGATTRSGMLSEPLRTRFAFSARLSYYSDQDLKEI 187

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           + R + L G+     A  EIA RSRGTPR+A  LLR VRDFA++     I  ++A+ AL 
Sbjct: 188 LVRSSHLLGIEADSSALLEIAKRSRGTPRLANHLLRWVRDFAQIREGNCINGDVAEKALA 247

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L ID  G +++D++ LT I   + GGPVGI+T+S  + E    +ED+ EP++I +GFI+
Sbjct: 248 MLLIDDWGLNEIDIKLLTTIIDYYQGGPVGIKTLSVAVGEDIKTLEDVYEPFLILKGFIK 307

Query: 312 RTPRGRLLMPIAWQHL 327
           +TPRGR++  +A+ HL
Sbjct: 308 KTPRGRMVTQLAYDHL 323


>gi|116074410|ref|ZP_01471672.1| Holliday junction DNA helicase RuvB [Synechococcus sp. RS9916]
 gi|116069715|gb|EAU75467.1| Holliday junction DNA helicase RuvB [Synechococcus sp. RS9916]
          Length = 347

 Score =  326 bits (836), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 164/337 (48%), Positives = 220/337 (65%), Gaps = 11/337 (3%)

Query: 7   LLSRNVSQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           +LS   S +++       LRPR L ++ GQ E    L + ++AA AR +ALDHVL  GPP
Sbjct: 1   MLSPEPSAQESASPREDGLRPRRLNDYIGQRELKQVLGIAVQAASARGDALDHVLLYGPP 60

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTT+A V+A ELGV  R TS P + +  D+  LL NL+ R++LFIDEIHRL+ + EE
Sbjct: 61  GLGKTTMALVLAEELGVTCRITSAPALERPRDIVGLLVNLQPRELLFIDEIHRLTRVAEE 120

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LYPAMED +LDL VG+G +AR+  ++L  FTL+ ATTR G L++PL+DRFG+  RL FY
Sbjct: 121 LLYPAMEDRRLDLTVGKGSTARTRTLDLPPFTLVGATTRAGSLSSPLRDRFGLIQRLEFY 180

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK---- 239
             EDL+ IV+R A L GL ++ +   EIA R RGTPRIA RLLRRVRD A V  A     
Sbjct: 181 GQEDLEAIVERAAGLLGLKLSPQGCTEIARRCRGTPRIANRLLRRVRDVASVRGAASGDP 240

Query: 240 ----TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDA 295
                I  E+ D AL    +D  G D  D R L ++ +  GGGPVG++T++A L E    
Sbjct: 241 VEATVIDAELVDEALSLHRVDGRGLDASDRRLLELLLQGHGGGPVGLDTLAAALGEDSTT 300

Query: 296 IEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           +E ++EPY++Q GF+QRTPRGR++     +HLG  + 
Sbjct: 301 LETVVEPYLLQLGFLQRTPRGRVVTAAGRRHLGWPVD 337


>gi|183601647|ref|ZP_02963017.1| Holliday junction DNA helicase B [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219683819|ref|YP_002470202.1| Holliday junction DNA helicase RuvB [Bifidobacterium animalis
           subsp. lactis AD011]
 gi|241190855|ref|YP_002968249.1| Holliday junction DNA helicase RuvB [Bifidobacterium animalis
           subsp. lactis Bl-04]
 gi|241196261|ref|YP_002969816.1| Holliday junction DNA helicase RuvB [Bifidobacterium animalis
           subsp. lactis DSM 10140]
 gi|183219253|gb|EDT89894.1| Holliday junction DNA helicase B [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219621469|gb|ACL29626.1| Holliday junction DNA helicase RuvB [Bifidobacterium animalis
           subsp. lactis AD011]
 gi|240249247|gb|ACS46187.1| Holliday junction DNA helicase B [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|240250815|gb|ACS47754.1| Holliday junction DNA helicase B [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|295793844|gb|ADG33379.1| Holliday junction DNA helicase B [Bifidobacterium animalis subsp.
           lactis V9]
          Length = 355

 Score =  326 bits (835), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 160/322 (49%), Positives = 218/322 (67%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           V  E      LRP  LE F GQ    + L++F++AA+ R  A DH+L  GPPGLGKTTLA
Sbjct: 24  VGNEPVSDEELRPHVLEGFIGQPRLKAQLQLFLDAARKRDVAPDHILMAGPPGLGKTTLA 83

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            +VA ELGV  R TSGP I  AGDLA++L++L+  +VLFIDEIHRL    EE+LY AMED
Sbjct: 84  MIVANELGVPIRVTSGPAIQHAGDLASILSSLDVGEVLFIDEIHRLPRAAEELLYIAMED 143

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F++D+MVG+GP A S+ + L RFT+I ATTR G+L +PL+ RFG    L+FY  E+L+ +
Sbjct: 144 FRVDVMVGKGPGASSIPLTLPRFTVIGATTREGMLPSPLRARFGFTAHLDFYPHEELEKL 203

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           ++R A + GL + D+AA ++++RSRGTPRIA RLLRRVRD+A V    ++  +    AL 
Sbjct: 204 IERSASVLGLPLEDQAARQLSLRSRGTPRIANRLLRRVRDWAIVHDLDSVGADDVKDALA 263

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
              ID  G D+LD+  L  I R F GGPVG+  +SA + E  + +E + EPY++++GF+ 
Sbjct: 264 LYQIDSEGLDRLDIAVLNAIVRQFNGGPVGLNNLSAMVGEEAETVETVCEPYLVREGFLI 323

Query: 312 RTPRGRLLMPIAWQHLGIDIPH 333
           RTP+GRL    AW+HLG+    
Sbjct: 324 RTPKGRLATAKAWEHLGLKPDD 345


>gi|466823|gb|AAA17098.1| ruvB [Mycobacterium leprae]
          Length = 369

 Score =  326 bits (835), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 154/308 (50%), Positives = 214/308 (69%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRS 84
           R+L EF GQ      L++ IE AK R    DH+L  GPPGLGKT+LA ++A ELG + R 
Sbjct: 48  RSLREFIGQPRVREQLQLVIEGAKNRGATPDHILLSGPPGLGKTSLAMIIAAELGSSLRM 107

Query: 85  TSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSA 144
           TSGP + +AGDLA +L+NL + DVLFIDEIHR++   EE+LY AMEDF++D++VG+GP A
Sbjct: 108 TSGPALERAGDLAVMLSNLVEHDVLFIDEIHRIARPAEEMLYLAMEDFRVDVIVGKGPGA 167

Query: 145 RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVT 204
            S+ + ++ FTL+ ATTR G LT PL+DRFG    ++FYE  +L+ ++ R A + G+ + 
Sbjct: 168 TSIPLEVAPFTLVGATTRSGALTGPLRDRFGFTAHMDFYEPTELEGVLARAAGILGIELG 227

Query: 205 DEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLD 264
            EA  EIA RSRGTPRIA RLLRRVRDFAEV     ITR++A AAL    +D++G D+LD
Sbjct: 228 VEAGAEIARRSRGTPRIANRLLRRVRDFAEVRADGVITRDVAKAALAVYDVDELGLDRLD 287

Query: 265 LRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAW 324
              L+ + R+FGGGPVG+ T++  + E    +E++ EP++++ G + RTPRGR+    AW
Sbjct: 288 RAVLSALTRSFGGGPVGVSTLAVAVGEEATTVEEVCEPFLVRAGMVARTPRGRVATAQAW 347

Query: 325 QHLGIDIP 332
            +L +  P
Sbjct: 348 TYLCMTPP 355


>gi|188527198|ref|YP_001909885.1| Holliday junction DNA helicase RuvB [Helicobacter pylori Shi470]
 gi|238691905|sp|B2USM3|RUVB_HELPS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|188143438|gb|ACD47855.1| Holliday junction DNA helicase B [Helicobacter pylori Shi470]
 gi|308063250|gb|ADO05137.1| Holliday junction DNA helicase RuvB [Helicobacter pylori Sat464]
          Length = 336

 Score =  326 bits (835), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 158/329 (48%), Positives = 232/329 (70%), Gaps = 2/329 (0%)

Query: 4   REGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           +E +++      E +  + LRP   E++ GQ +  SNL+V I AAK R E+LDH+LF GP
Sbjct: 2   KERIVNLETLDFETSQEASLRPNLWEDYIGQEKIKSNLQVSICAAKKRQESLDHMLFFGP 61

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKT+++ ++A+E+  N + T+ P+I K+GDLAA+LTNL+ +D+LFIDEIHRLS  +E
Sbjct: 62  PGLGKTSISHIIAKEMETNLKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIE 121

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMEDF+LD+++G GP+A+++KI+L  FTLI ATTR G+L+NPL+DRFG+  R+ F
Sbjct: 122 EVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQF 181

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y   +L  I+++ A      + +E+A EIA RSRGTPRIA RLL+RVRDFA V ++  + 
Sbjct: 182 YSPSELALIIKKAAAKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMD 241

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             I   AL  L ++++GFD+ DL YL+++A    G PVG+ TI+A + E    IED+IEP
Sbjct: 242 LNITLHALNELGVNELGFDEADLAYLSLLANA-QGRPVGLNTIAASMREDEGTIEDVIEP 300

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           +++  G+++RT +GR+  P     L I  
Sbjct: 301 FLLANGYLERTAKGRIATPKTHALLKIPT 329


>gi|301168493|emb|CBW28083.1| holliday junction DNA helicase ruvB [Bacteriovorax marinus SJ]
          Length = 330

 Score =  326 bits (835), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 165/327 (50%), Positives = 227/327 (69%), Gaps = 1/327 (0%)

Query: 2   MDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M  E +   N S+E++   + LRP+   E+ GQ +   N++V +E+AK R +A+DHVL  
Sbjct: 1   MSEERVFDSNSSREESRQEIFLRPKDFSEYIGQRKVVQNIEVMVESAKIRKQAMDHVLLS 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKT+LA ++A  LG +    SGP I K GDLAA+LTNLE+ DVLFIDEIHR++I 
Sbjct: 61  GPPGLGKTSLAMIIASALGSHLHVISGPAIEKKGDLAAILTNLEEGDVLFIDEIHRMNIS 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEEILY AMED++LD+++GEG SAR+++I++S FTLI ATTR GLL++PL+DRF   +  
Sbjct: 121 VEEILYSAMEDYRLDILIGEGASARTMEISISPFTLIGATTRSGLLSSPLRDRFMAHLHF 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           +FYE  +L  IV+  +K   + +  EA   IA  SRGTPRIA R+LRRVRDFA V   ++
Sbjct: 181 DFYEHSELAKIVENNSKKLSIGLEGEAKNHIARCSRGTPRIANRILRRVRDFAVVESKES 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I  E    AL  + ID+ G D++D + L +I   + GGPVGIE + A LSE R  IED+ 
Sbjct: 241 ICEEAVAKALDLMEIDEYGLDRMDRKVLEVIHDYYAGGPVGIEALCATLSEDRTTIEDVY 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHL 327
           EP+++++GF+ RTPRGR +   A +HL
Sbjct: 301 EPFLLKEGFLIRTPRGREISEKAKKHL 327


>gi|296436481|gb|ADH18651.1| Holliday junction DNA helicase RuvB [Chlamydia trachomatis G/11222]
          Length = 334

 Score =  325 bits (834), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 141/323 (43%), Positives = 207/323 (64%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           + Q+      LRP+ L EF GQ +    L +F+ AA  R E   H LF GPPGLGKT+LA
Sbjct: 8   LHQDKKFDFSLRPKKLTEFCGQKQLKERLDLFLRAAVQRNEVPGHCLFYGPPGLGKTSLA 67

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            ++A  +G      SGP + K  DL  LLT L++ D+ FIDEIHR+    EE LYPAMED
Sbjct: 68  HIMANTIGKGLVIASGPQLLKPSDLIGLLTGLQEGDIFFIDEIHRMGKAAEEYLYPAMED 127

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F++D+ +  GP ARSV+++L+ FTL+ ATTR G+L+ PL+ RF    R+++Y  EDL +I
Sbjct: 128 FKVDITLDSGPGARSVRLDLAPFTLVGATTRAGMLSEPLRTRFAFTGRVDYYTDEDLVSI 187

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           + R ++L  +    E   EIA R+RGTPR+A  LLR VRDFA++     I   +A+ AL 
Sbjct: 188 LSRSSQLLAIEANQETLLEIARRARGTPRLANNLLRWVRDFAQMREGNCINSAVAEKALA 247

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L ID +G +++D++ L+++   + GGPVGI+T++  + E    +ED+ EP++I +G +Q
Sbjct: 248 MLLIDNLGLNEIDIKLLSVMIDFYQGGPVGIKTLAMAVGEDVRTLEDMYEPFLILKGLVQ 307

Query: 312 RTPRGRLLMPIAWQHLGIDIPHR 334
           RT RGR+  P+A++HL  +   R
Sbjct: 308 RTARGRVATPLAYEHLNRNPKDR 330


>gi|289178594|gb|ADC85840.1| RuvB [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 363

 Score =  325 bits (834), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 160/322 (49%), Positives = 218/322 (67%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           V  E      LRP  LE F GQ    + L++F++AA+ R  A DH+L  GPPGLGKTTLA
Sbjct: 32  VGNEPVSDEELRPHVLEGFIGQPRLKAQLQLFLDAARKRDVAPDHILMAGPPGLGKTTLA 91

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            +VA ELGV  R TSGP I  AGDLA++L++L+  +VLFIDEIHRL    EE+LY AMED
Sbjct: 92  MIVANELGVPIRVTSGPAIQHAGDLASILSSLDVGEVLFIDEIHRLPRAAEELLYIAMED 151

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F++D+MVG+GP A S+ + L RFT+I ATTR G+L +PL+ RFG    L+FY  E+L+ +
Sbjct: 152 FRVDVMVGKGPGASSIPLTLPRFTVIGATTREGMLPSPLRARFGFTAHLDFYPHEELEKL 211

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           ++R A + GL + D+AA ++++RSRGTPRIA RLLRRVRD+A V    ++  +    AL 
Sbjct: 212 IERSASVLGLPLEDQAARQLSLRSRGTPRIANRLLRRVRDWAIVHDLDSVGADDVKDALA 271

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
              ID  G D+LD+  L  I R F GGPVG+  +SA + E  + +E + EPY++++GF+ 
Sbjct: 272 LYQIDSEGLDRLDIAVLNAIVRQFNGGPVGLNNLSAMVGEEAETVETVCEPYLVREGFLI 331

Query: 312 RTPRGRLLMPIAWQHLGIDIPH 333
           RTP+GRL    AW+HLG+    
Sbjct: 332 RTPKGRLATAKAWEHLGLKPDD 353


>gi|224370134|ref|YP_002604298.1| Holliday junction DNA helicase RuvB [Desulfobacterium autotrophicum
           HRM2]
 gi|259495662|sp|C0QKP4|RUVB_DESAH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|223692851|gb|ACN16134.1| RuvB [Desulfobacterium autotrophicum HRM2]
          Length = 354

 Score =  325 bits (834), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 156/321 (48%), Positives = 208/321 (64%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           S     + +++  LRP   E + GQ +    LK+ I+AAK R + LDHVL  GPPGLGKT
Sbjct: 27  SSQPVDDSSEVVSLRPDRFESYVGQTDTVETLKIAIQAAKMRGDCLDHVLLHGPPGLGKT 86

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           T++ ++A E+G     TSGP + K GDL  +LTNL   D+LFIDEIHRL   VEE LYPA
Sbjct: 87  TISHIIANEMGGTLTVTSGPALEKGGDLIGMLTNLARGDILFIDEIHRLPKTVEEFLYPA 146

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           MEDF +D +  +G  ARS +  L +F L+ ATTRVGL+++PL+DRFGI   L+FY  E+L
Sbjct: 147 MEDFAVDFVFDKGLHARSHRYRLKQFVLVGATTRVGLISSPLRDRFGIFRSLDFYTDEEL 206

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
            TI++R A L  + + D AA E+A RSRGTPRIA RLL+RVRDF+ V  +  +T++   A
Sbjct: 207 VTIIRRSAGLLNVVLDDGAALELARRSRGTPRIANRLLKRVRDFSMVRSSGEVTQKSVAA 266

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL    ID  G   LD  YL  I   + GGPVGIE ++A L E  D + D++EPY+++ G
Sbjct: 267 ALSLEGIDSKGLTVLDRNYLRTIIEFYRGGPVGIEAVAATLQEETDTLVDVVEPYLLKIG 326

Query: 309 FIQRTPRGRLLMPIAWQHLGI 329
            + RT  GR     A++HLGI
Sbjct: 327 MVMRTSAGRRASVGAYEHLGI 347


>gi|317012227|gb|ADU82835.1| Holliday junction DNA helicase RuvB [Helicobacter pylori
           Lithuania75]
          Length = 336

 Score =  325 bits (834), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 157/329 (47%), Positives = 231/329 (70%), Gaps = 2/329 (0%)

Query: 4   REGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           +E +++      E +    LRP   E+F GQ +  SNL++ I AAK R E+LDH+LF GP
Sbjct: 2   KERIVNLETLDFETSQEVSLRPSLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGP 61

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKT+++ ++A+E+  N + T+ P+I K+GDLAA+LTNL+ +D+LFIDEIHRLS  +E
Sbjct: 62  PGLGKTSISHIIAKEMETNIKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIE 121

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMEDF+LD+++G GP+A+++KI+L  FTLI ATTR G+L+NPL+DRFG+  R+ F
Sbjct: 122 EVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQF 181

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y   +L  I+++ A      + +E+A EIA RSRGTPRIA RLL+RV DFA V ++  + 
Sbjct: 182 YSPSELALIIKKAAIKLNQDIKEESADEIAKRSRGTPRIALRLLKRVCDFALVKNSSLMD 241

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             I   AL  L ++++GFD++DL YL+++A    G PVG+ TI+A + E    IED+IEP
Sbjct: 242 LNITLHALNELGVNELGFDEVDLAYLSLLANA-QGKPVGLNTIAASMREDEGTIEDVIEP 300

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           +++  G+++RT +GR+  P     L I  
Sbjct: 301 FLLANGYLERTAKGRIATPKTHALLKIPT 329


>gi|269303267|gb|ACZ33367.1| holliday junction DNA helicase RuvB [Chlamydophila pneumoniae
           LPCoLN]
          Length = 337

 Score =  325 bits (834), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 147/316 (46%), Positives = 205/316 (64%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           + Q+      LRP+ LEEF GQ      L +F+ AA  R E   H LF GPPGLGKT+LA
Sbjct: 8   LHQDKKFDVSLRPKGLEEFYGQHHLKERLDLFLCAALQRGEVPGHCLFFGPPGLGKTSLA 67

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            +VA  +G      SGP + K  DL  LLT+L++ DV FIDEIHR+  + EE LY AMED
Sbjct: 68  HIVAYTVGKGLVLASGPQLIKPSDLLGLLTSLQEGDVFFIDEIHRMGKVAEEYLYSAMED 127

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F++D+ +  GP ARSV+++L+ FTL+ ATTR G+L+ PL+ RF    RL++Y  +DLK I
Sbjct: 128 FKVDITIDSGPGARSVRVDLAPFTLVGATTRSGMLSEPLRARFAFSARLSYYSDQDLKEI 187

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           + R + L G+     A  EIA RSRGTPR+A  LLR VRDFA++     I  ++A+ AL 
Sbjct: 188 LVRSSHLLGIEADSSALLEIAKRSRGTPRLANHLLRWVRDFAQIREGNCINGDVAEKALA 247

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L ID  G +++D++ LT I   + GGPVGI+T+S  + E    +ED+ EP++I +G I+
Sbjct: 248 MLLIDDWGLNEIDIKLLTTIIDYYQGGPVGIKTLSVAVGEDIKTLEDVYEPFLILKGLIK 307

Query: 312 RTPRGRLLMPIAWQHL 327
           +TPRGR++  +A+ HL
Sbjct: 308 KTPRGRMVTQLAYDHL 323


>gi|225166217|ref|ZP_03727926.1| Holliday junction DNA helicase RuvB [Opitutaceae bacterium TAV2]
 gi|224799539|gb|EEG18059.1| Holliday junction DNA helicase RuvB [Opitutaceae bacterium TAV2]
          Length = 353

 Score =  325 bits (834), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 159/323 (49%), Positives = 221/323 (68%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           + S   +      + LRP +  +FTGQ +    L+V + AA+ R EAL+H+L  GPPGLG
Sbjct: 13  ITSALEAPVSPAEAALRPLSFADFTGQPKTVERLQVMVGAARRRGEALNHILISGPPGLG 72

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTTL  ++  E+G N R TSGPV+ KAGDLA LLTNLE+ D+LFIDEIHR+   VEE LY
Sbjct: 73  KTTLCFILGHEMGKNVRVTSGPVVEKAGDLAGLLTNLEEGDILFIDEIHRIPKTVEEYLY 132

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            AMEDF+LD+M+ +GP+ARSV++++ RFTL+ ATTR GLLT PL+ RF +  RL++Y++ 
Sbjct: 133 SAMEDFRLDIMIDQGPNARSVRLSIPRFTLVGATTRAGLLTAPLRSRFTLQTRLDYYDVP 192

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
            L  IVQR   L  + + +  A EIA R+RGTPRIA  L+  VRDFA+      ITR  A
Sbjct: 193 TLMGIVQRSCGLLKVTIDEAGAREIASRARGTPRIANNLINFVRDFAQERGDGRITRPAA 252

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
            AAL  L ID  G D++D R L ++A N+ GGPVG+ TI+  + E  + +E++ EP++IQ
Sbjct: 253 AAALELLEIDAAGLDEMDKRMLRIMAENYRGGPVGLGTIAVAVGEESETLEEVHEPFLIQ 312

Query: 307 QGFIQRTPRGRLLMPIAWQHLGI 329
           +G++QRTP+GR+L    +  +G+
Sbjct: 313 EGYLQRTPQGRVLTAKGYHAIGL 335


>gi|170781149|ref|YP_001709481.1| Holliday junction DNA helicase RuvB [Clavibacter michiganensis
           subsp. sepedonicus]
 gi|169155717|emb|CAQ00838.1| holliday junction dna helicase RuvB [Clavibacter michiganensis
           subsp. sepedonicus]
          Length = 359

 Score =  325 bits (834), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 152/323 (47%), Positives = 210/323 (65%), Gaps = 1/323 (0%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
                E A    LRPR+L EF GQV+    L++ + AA  +  + DH+L  GPPGLGKTT
Sbjct: 14  PESDAELAFEGALRPRSLSEFVGQVKVRGQLELLLTAAAMQNRSPDHILLAGPPGLGKTT 73

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           LA +VA E     R TSGP I  AGDLAA+L+ L   ++LF+DEIHR++   EE+LY AM
Sbjct: 74  LAMIVAEESRRPLRLTSGPAIQHAGDLAAVLSALVPGEILFVDEIHRMARSAEEMLYLAM 133

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           ED+++D+MVG+G  A S+ + LS FTL+ ATTR G+L +PL+DRFG    L FYE  +L+
Sbjct: 134 EDYRIDIMVGKGAGATSIPLELSPFTLVGATTRSGMLPSPLRDRFGFTAHLEFYETHELE 193

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            +++R A++  L +  EA  EIA R RGTPRIA RLLRRVRD+A V   +    E   AA
Sbjct: 194 QVIERAARMLHLEIEHEAVAEIAGRCRGTPRIANRLLRRVRDYALVHGTEAG-LESVRAA 252

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           L    +D +G D+LD   +  I   FGGGPVG+ T++  + E  + IE ++EP++++ G 
Sbjct: 253 LDLYDVDPLGLDRLDRAVMRGILTRFGGGPVGLNTLAVSVGEEAETIESVVEPFLVRIGL 312

Query: 310 IQRTPRGRLLMPIAWQHLGIDIP 332
           + RTPRGR+  P AW+H G++ P
Sbjct: 313 VTRTPRGRVATPAAWEHFGLEAP 335


>gi|317010664|gb|ADU84411.1| Holliday junction DNA helicase RuvB [Helicobacter pylori
           SouthAfrica7]
          Length = 336

 Score =  325 bits (833), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 156/329 (47%), Positives = 232/329 (70%), Gaps = 2/329 (0%)

Query: 4   REGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           +E +++      E +    LRP   E++ GQ +  +NL++ I AAK R E+LDH+LF GP
Sbjct: 2   KERIVNLETLDFETSQEVSLRPDLWEDYIGQEKIKNNLQISICAAKKRQESLDHMLFFGP 61

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKT+++ ++A+E+  N + T+ P+I K+GDLAA+LTNL+ +D+LFIDEIHRLS  +E
Sbjct: 62  PGLGKTSISHIIAKEMETNIKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIE 121

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMEDF+LD+++G GP+A+++KI+L  FTLI ATTR G+L+NPL+DRFG+  R+ F
Sbjct: 122 EVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQF 181

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y   +L  I+++ A      + +E+A EIA RSRGTPRIA RLL+RVRDFA V ++  + 
Sbjct: 182 YSPSELALIIKKAAAKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMD 241

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             I   AL  L ++++GFD+ DL YL+++A    G PVG+ TI+A + E    IED+IEP
Sbjct: 242 LNITLHALNALGVNELGFDEADLAYLSLLANA-QGKPVGLNTIAASMREDESTIEDVIEP 300

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           +++  G+++RT +GR+  P  +  L I  
Sbjct: 301 FLLANGYLERTAKGRIATPKTYALLKIPT 329


>gi|317013831|gb|ADU81267.1| Holliday junction DNA helicase RuvB [Helicobacter pylori
           Gambia94/24]
          Length = 336

 Score =  325 bits (833), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 158/329 (48%), Positives = 231/329 (70%), Gaps = 2/329 (0%)

Query: 4   REGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           +E +++      E +    LRP   E+F GQ +  SNL++ I AAK R E+LDH+LF GP
Sbjct: 2   KERIVNLETLDFETSQEVSLRPNLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGP 61

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKT+++ ++A+E+  N + T+ P+I K+GDLAA+LTNL+ +D+LFIDEIHRLS  +E
Sbjct: 62  PGLGKTSISHIIAKEMETNIKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIE 121

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMEDF+LD+++G GP+A+++KI+L  FTLI ATTR G+L+NPL+DRFG+  R+ F
Sbjct: 122 EVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQF 181

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y   +L  I+++ A      + +E+A EIA RSRGTPRIA RLL+RVRDFA V ++  + 
Sbjct: 182 YSPSELSLIIKKAAAKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMD 241

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             I   AL  L ++++GFD+ DL YL+++A    G PVG+ TI+A + E    IED+IEP
Sbjct: 242 LNITLHALNELGVNELGFDEADLAYLSLLANA-QGKPVGLNTIAASMREDEGTIEDVIEP 300

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           +++  G+++RT +GR+  P     L I  
Sbjct: 301 FLLANGYLERTAKGRIATPKTHALLKIPT 329


>gi|154148614|ref|YP_001406316.1| Holliday junction DNA helicase B [Campylobacter hominis ATCC
           BAA-381]
 gi|166231478|sp|A7I1C5|RUVB_CAMHC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|153804623|gb|ABS51630.1| holliday junction DNA helicase RuvB [Campylobacter hominis ATCC
           BAA-381]
          Length = 340

 Score =  325 bits (833), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 168/330 (50%), Positives = 234/330 (70%), Gaps = 2/330 (0%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MDR   + +   +E+   + LRP + +++ GQ +   NLKVFI AAK RAE LDHVLF G
Sbjct: 1   MDRIVEIEKADFEEEI-ETSLRPTSFDDYIGQSKIKENLKVFIAAAKKRAECLDHVLFYG 59

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+GV+ + T+ P+I K+GDLAA+LTNLE+ DVLFIDEIHRLS  +
Sbjct: 60  PPGLGKTTLAHIIANEMGVSIKITAAPMIEKSGDLAAILTNLEENDVLFIDEIHRLSSAI 119

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMEDF+LD+++G GP+A+++KI++ +FTLI ATTR G+++ PL+DRFG+  RLN
Sbjct: 120 EEVLYSAMEDFRLDIIIGSGPAAQTIKIDIPKFTLIGATTRAGMISAPLRDRFGMQFRLN 179

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY  ++L  IVQ  A          AA +IA RSRGTPRIA RLL+R+RDFAEV +   I
Sbjct: 180 FYTSDELAKIVQIAAVKLNKECEKNAALQIAKRSRGTPRIALRLLKRIRDFAEVNNENII 239

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
               A ++L  L ++ +GFD++DL+YL ++        +G+ TISA LSE    IED+IE
Sbjct: 240 NENRAKSSLDALGVNDLGFDEMDLKYLEILGST-KNRALGLSTISAALSEDEGTIEDVIE 298

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           PY++  G+I+RT +GR++   + + LGI  
Sbjct: 299 PYLLANGYIERTAKGRIITAKSCEILGIKY 328


>gi|325995675|gb|ADZ51080.1| Holliday junction DNA helicase [Helicobacter pylori 2018]
 gi|325997271|gb|ADZ49479.1| Holliday junction DNA helicase [Helicobacter pylori 2017]
          Length = 336

 Score =  325 bits (833), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 158/329 (48%), Positives = 231/329 (70%), Gaps = 2/329 (0%)

Query: 4   REGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           +E +++      E +    LRP   E+F GQ +  SNL++ I AAK R E+LDH+LF GP
Sbjct: 2   KERIVNLETLDFETSQEVSLRPNLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGP 61

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKT+++ ++A+E+  N + T+ P+I K+GDLAA+LTNL+ +D+LFIDEIHRLS  +E
Sbjct: 62  PGLGKTSISHIIAKEMETNIKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIE 121

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMEDF+LD+++G GP+A+++KI+L  FTLI ATTR G+L+NPL+DRFG+  R+ F
Sbjct: 122 EVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQF 181

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y   +L  I+++ A      + +E+A EIA RSRGTPRIA RLL+RVRDFA V ++  + 
Sbjct: 182 YSPSELALIIKKAAAKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMD 241

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             I   AL  L ++++GFD+ DL YL+++A    G PVG+ TI+A + E    IED+IEP
Sbjct: 242 LNITLHALNELGVNELGFDEADLAYLSLLANA-QGKPVGLNTIAASMREDEGTIEDVIEP 300

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           +++  G+++RT +GR+  P     L I  
Sbjct: 301 FLLANGYLERTAKGRIATPKTHALLKIPT 329


>gi|76788753|ref|YP_327839.1| Holliday junction DNA helicase B [Chlamydia trachomatis A/HAR-13]
 gi|237802475|ref|YP_002887669.1| Holliday junction DNA helicase RuvB [Chlamydia trachomatis
           B/Jali20/OT]
 gi|255348403|ref|ZP_05380410.1| Holliday junction DNA helicase RuvB [Chlamydia trachomatis 70]
 gi|255502944|ref|ZP_05381334.1| Holliday junction DNA helicase RuvB [Chlamydia trachomatis 70s]
 gi|255506613|ref|ZP_05382252.1| Holliday junction DNA helicase RuvB [Chlamydia trachomatis
           D(s)2923]
 gi|97189991|sp|Q3KMY1|RUVB_CHLTA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|76167283|gb|AAX50291.1| RuvB [Chlamydia trachomatis A/HAR-13]
 gi|231273709|emb|CAX10487.1| Holliday junction ATP-dependent DNA helicase [Chlamydia trachomatis
           B/Jali20/OT]
 gi|289525085|emb|CBJ14556.1| Holliday junction ATP-dependent DNA helicase [Chlamydia trachomatis
           Sweden2]
 gi|296434626|gb|ADH16804.1| Holliday junction DNA helicase RuvB [Chlamydia trachomatis E/150]
 gi|296438344|gb|ADH20497.1| Holliday junction DNA helicase RuvB [Chlamydia trachomatis E/11023]
          Length = 334

 Score =  325 bits (832), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 140/323 (43%), Positives = 207/323 (64%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           + Q+      LRP+ L EF GQ +    L +F+ AA  R E   H LF GPPGLGKT+LA
Sbjct: 8   LHQDKKFDFSLRPKKLTEFCGQKQLKERLDLFLRAAVQRNEVPGHCLFYGPPGLGKTSLA 67

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            ++A  +G      SGP + K  DL  LLT L++ D+ FIDEIHR+    EE LYPAMED
Sbjct: 68  HIMANTIGKGLVIASGPQLLKPSDLIGLLTGLQEGDIFFIDEIHRMGKAAEEYLYPAMED 127

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F++D+ +  GP ARSV+++L+ FTL+ ATTR G+L+ PL+ RF    R+++Y  EDL +I
Sbjct: 128 FKVDITLDSGPGARSVRLDLAPFTLVGATTRAGMLSEPLRTRFAFTGRVDYYTDEDLVSI 187

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           + R ++L  +    E   EIA R+RGTPR+A  LLR VRDFA++     I   +A+ AL 
Sbjct: 188 LSRSSQLLSIEANQETLLEIARRARGTPRLANNLLRWVRDFAQMREGNCINSAVAEKALA 247

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L ID +G +++D++ L+++   + GGPVG++T++  + E    +ED+ EP++I +G +Q
Sbjct: 248 MLLIDNLGLNEIDIKLLSVMIDFYQGGPVGMKTLAMAVGEDVRTLEDMYEPFLILKGLVQ 307

Query: 312 RTPRGRLLMPIAWQHLGIDIPHR 334
           RT RGR+  P+A++HL  +   R
Sbjct: 308 RTARGRVATPLAYEHLNRNPKDR 330


>gi|317180716|dbj|BAJ58502.1| Holliday junction DNA helicase B [Helicobacter pylori F32]
          Length = 336

 Score =  325 bits (832), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 157/329 (47%), Positives = 231/329 (70%), Gaps = 2/329 (0%)

Query: 4   REGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           +E +++      E +    LRP   E++ GQ +  SNL++ I AAK R E+LDH+LF GP
Sbjct: 2   KERIVNLETLDFETSQEVSLRPSLWEDYIGQEKIKSNLQISICAAKKRQESLDHMLFFGP 61

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKT+++ ++A+E+  N + T+ P+I K+GDLAA+LTNL+ +D+LFIDEIHRLS  +E
Sbjct: 62  PGLGKTSISHIIAKEMETNIKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIE 121

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMEDF+LD+++G GP+A+++KI+L  FTLI ATTR G+L+NPL+DRFG+  R+ F
Sbjct: 122 EVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQF 181

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y   +L  I+++ A      + +E+A EIA RSRGTPRIA RLL+RVRDFA V ++  + 
Sbjct: 182 YSPSELALIIKKAAAKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMD 241

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             I   AL  L ++++GFD+ DL YL+++A    G PVG+ TI+A + E    IED+IEP
Sbjct: 242 LNITLHALNELGVNELGFDEADLAYLSLLANA-QGRPVGLNTIAASMREDEGTIEDVIEP 300

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           +++  G+++RT +GR+  P     L I  
Sbjct: 301 FLLANGYLERTAKGRIATPKTHALLKIPT 329


>gi|317009034|gb|ADU79614.1| Holliday junction DNA helicase RuvB [Helicobacter pylori India7]
          Length = 336

 Score =  325 bits (832), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 157/329 (47%), Positives = 232/329 (70%), Gaps = 2/329 (0%)

Query: 4   REGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           +E +++      E +    LRP   E++ GQ +  SNL++ I AAK R E+LDH+LF GP
Sbjct: 2   KERIVNLETLDFETSQEVSLRPNLWEDYIGQEKIKSNLQISICAAKKRQESLDHMLFFGP 61

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKT+++ ++A+E+  N + T+ P+I K+GDLAA+LTNL+ +D+LFIDEIHRLS  +E
Sbjct: 62  PGLGKTSISHIIAKEMETNIKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIE 121

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMEDF+LD+++G GP+A+++KI+L  FTLI ATTR G+L+NPL+DRFG+  R+ F
Sbjct: 122 EVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQF 181

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y   +L  I+++ A      + +E+A EIA RSRGTPRIA RLL+RVRDFA V ++  + 
Sbjct: 182 YSPSELALIIKKAAAKLHQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMD 241

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            +I   AL  L ++++GFD+ DL YL+++A    G PVG+ TI+A + E    IED+IEP
Sbjct: 242 LDITLHALKELGVNELGFDEADLAYLSLLANA-QGRPVGLNTIAASMREDEGTIEDVIEP 300

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           +++  G+++RT +GR+  P     L I  
Sbjct: 301 FLLANGYLERTAKGRIATPKTHALLKIPT 329


>gi|308182557|ref|YP_003926684.1| Holliday junction DNA helicase RuvB [Helicobacter pylori PeCan4]
 gi|308064742|gb|ADO06634.1| Holliday junction DNA helicase RuvB [Helicobacter pylori PeCan4]
          Length = 336

 Score =  325 bits (832), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 158/329 (48%), Positives = 231/329 (70%), Gaps = 2/329 (0%)

Query: 4   REGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           +E +++      E +    LRP   E+F GQ +  SNL++ I AAK R E+LDH+LF GP
Sbjct: 2   KERIVNLETLDFETSQEVSLRPNLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGP 61

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKT+++ ++A+E+  N + T+ P+I K+GDLAA+LTNL+ +D+LFIDEIHRLS  +E
Sbjct: 62  PGLGKTSISHIIAKEMETNIKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIE 121

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMEDF+LD+++G GP+A+++KI+L  FTLI ATTR G+L+NPL+DRFG+  R+ F
Sbjct: 122 EVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQF 181

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y   +L  I+++ A      + +E+A EIA RSRGTPRIA RLL+RVRDFA V ++  + 
Sbjct: 182 YSPSELALIIKKAATKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMD 241

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             I   AL  L ++++GFD+ DL YL+++A    G PVG+ TI+A + E    IED+IEP
Sbjct: 242 LNITLHALNELGVNELGFDEADLAYLSLLANA-QGKPVGLNTIAASMREDEGTIEDVIEP 300

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           +++  G+++RT +GR+  P     L I  
Sbjct: 301 FLLANGYLERTAKGRIATPKTHALLKIPT 329


>gi|308061740|gb|ADO03628.1| Holliday junction DNA helicase RuvB [Helicobacter pylori Cuz20]
          Length = 338

 Score =  325 bits (832), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 159/329 (48%), Positives = 231/329 (70%), Gaps = 2/329 (0%)

Query: 4   REGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           +E +++      E +    LRP   E+F GQ +  SNL+V I AAK R E+LDH+LF GP
Sbjct: 2   KERIVNLETLDFETSQEVSLRPNLWEDFIGQEKIKSNLQVSICAAKKRQESLDHMLFFGP 61

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKT+++ ++A+E+  N + T+ P+I K+GDLAA+LTNL+ +D+LFIDEIHRLS  +E
Sbjct: 62  PGLGKTSISHIIAKEMETNIKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIE 121

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMEDF+LD+++G GP+A+++KI+L  FTLI ATTR G+L+NPL+DRFG+  R+ F
Sbjct: 122 EVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQF 181

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y   +L  I+++ A      + +E+A EIA RSRGTPRIA RLL+RVRDFA V ++  + 
Sbjct: 182 YSPSELALIIKKAAVKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMD 241

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             I   AL  L ++++GFD+ DL YL+++A    G PVG+ TI+A + E    IED+IEP
Sbjct: 242 LNITLHALNELGVNELGFDEADLAYLSLLANA-QGRPVGLNTIAASMREDEGTIEDVIEP 300

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           +++  G+++RT +GR+  P     L I  
Sbjct: 301 FLLANGYLERTAKGRIATPKTHALLKIPT 329


>gi|297379609|gb|ADI34496.1| Holliday junction DNA helicase RuvB [Helicobacter pylori v225d]
          Length = 336

 Score =  325 bits (832), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 157/329 (47%), Positives = 231/329 (70%), Gaps = 2/329 (0%)

Query: 4   REGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           +E +++      E +    LRP   E++ GQ +  SNL++ I AAK R E+LDH+LF GP
Sbjct: 2   KERIVNLETLDFETSQEVSLRPNLWEDYIGQEKIKSNLQISICAAKKRQESLDHMLFFGP 61

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKT+++ ++A+E+  N + T+ P+I K+GDLAA+LTNL+ +D+LFIDEIHRLS  +E
Sbjct: 62  PGLGKTSISHIIAKEMETNIKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIE 121

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMEDF+LD+++G GP+A+++KI+L  FTLI ATTR G+L+NPL+DRFG+  R+ F
Sbjct: 122 EVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQF 181

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y   +L  I+++ A      + +E+A EIA RSRGTPRIA RLL+RVRDFA V ++  + 
Sbjct: 182 YSPSELALIIKKAASKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMD 241

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             I   AL  L ++++GFD+ DL YL+++A    G PVG+ TI+A + E    IED+IEP
Sbjct: 242 LNITLHALNELGVNELGFDEADLAYLSLLANA-QGRPVGLNTIAASMREDEGTIEDVIEP 300

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           +++  G+++RT +GR+  P     L I  
Sbjct: 301 FLLANGYLERTAKGRIATPKTHALLKIPT 329


>gi|317181730|dbj|BAJ59514.1| Holliday junction DNA helicase B [Helicobacter pylori F57]
          Length = 336

 Score =  325 bits (832), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 157/329 (47%), Positives = 231/329 (70%), Gaps = 2/329 (0%)

Query: 4   REGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           +E +++      E +    LRP   E++ GQ +  SNL++ I AAK R E+LDH+LF GP
Sbjct: 2   KERIVNLETLDFETSQEVSLRPNLWEDYIGQEKIKSNLQISICAAKKRQESLDHMLFFGP 61

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKT+++ ++A+E+  N + T+ P+I K+GDLAA+LTNL+ +D+LFIDEIHRLS  +E
Sbjct: 62  PGLGKTSISHIIAKEMETNIKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIE 121

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMEDF+LD+++G GP+A+++KI+L  FTLI ATTR G+L+NPL+DRFG+  R+ F
Sbjct: 122 EVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQF 181

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y   +L  I+++ A      + +E+A EIA RSRGTPRIA RLL+RVRDFA V ++  + 
Sbjct: 182 YSPSELALIIKKAAAKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMD 241

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             I   AL  L ++++GFD+ DL YL+++A    G PVG+ TI+A + E    IED+IEP
Sbjct: 242 LNITLHALNELGVNELGFDEADLAYLSLLANA-KGRPVGLNTIAASMREDEGTIEDVIEP 300

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           +++  G+++RT +GR+  P     L I  
Sbjct: 301 FLLANGYLERTAKGRIATPKTHALLKIPT 329


>gi|315586379|gb|ADU40760.1| crossover junction ATP-dependent DNA helicase RuvB [Helicobacter
           pylori 35A]
          Length = 336

 Score =  325 bits (832), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 158/329 (48%), Positives = 231/329 (70%), Gaps = 2/329 (0%)

Query: 4   REGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           +E +++      E +    LRP   E+F GQ +  SNL++ I AAK R E+LDH+LF GP
Sbjct: 2   KERIVNLETLDFETSQEVSLRPNLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGP 61

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKT+++ ++A+E+  N + T+ P+I K+GDLAA+LTNL+ +D+LFIDEIHRLS  +E
Sbjct: 62  PGLGKTSISHIIAKEMETNIKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIE 121

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMEDF+LD+++G GP+A+++KI+L  FTLI ATTR G+L+NPL+DRFG+  R+ F
Sbjct: 122 EVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQF 181

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y   +L  I+++ A      + +E+A EIA RSRGTPRIA RLL+RVRDFA V ++  + 
Sbjct: 182 YSPSELALIIKKAAAKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMD 241

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             I   AL  L ++++GFD+ DL YL+++A    G PVG+ TI+A + E    IED+IEP
Sbjct: 242 LNITLHALNELGVNELGFDEADLAYLSLLANA-QGRPVGLNTIAASMREDEGTIEDVIEP 300

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           +++  G+++RT +GR+  P     L I  
Sbjct: 301 FLLANGYLERTAKGRIATPKTHALLKIPT 329


>gi|317177200|dbj|BAJ54989.1| Holliday junction DNA helicase B [Helicobacter pylori F16]
          Length = 336

 Score =  325 bits (832), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 158/329 (48%), Positives = 231/329 (70%), Gaps = 2/329 (0%)

Query: 4   REGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           +E +++      E +    LRP   E++ GQ +  SNL+V I AAK R E+LDH+LF GP
Sbjct: 2   KERIVNLETLDFETSQEVSLRPNLWEDYIGQEKIKSNLQVSICAAKKRQESLDHMLFFGP 61

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKT+++ ++A+E+  N + T+ P+I K+GDLAA+LTNL+ +D+LFIDEIHRLS  +E
Sbjct: 62  PGLGKTSISHIIAKEMETNIKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIE 121

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMEDF+LD+++G GP+A+++KI+L  FTLI ATTR G+L+NPL+DRFG+  R+ F
Sbjct: 122 EVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQF 181

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y   +L  I+++ A      + +E+A EIA RSRGTPRIA RLL+RVRDFA V ++  + 
Sbjct: 182 YSPSELALIIKKAAAKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMD 241

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             I   AL  L ++++GFD+ DL YL+++A    G PVG+ TI+A + E    IED+IEP
Sbjct: 242 LNITLHALNELGVNELGFDEADLAYLSLLANA-QGRPVGLNTIAASMREDEGTIEDVIEP 300

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           +++  G+++RT +GR+  P     L I  
Sbjct: 301 FLLANGYLERTAKGRIATPKTHALLKIPT 329


>gi|329942753|ref|ZP_08291532.1| holliday junction DNA helicase RuvB [Chlamydophila psittaci Cal10]
 gi|332287350|ref|YP_004422251.1| holliday junction DNA helicase [Chlamydophila psittaci 6BC]
 gi|313847933|emb|CBY16928.1| holliday junction DNA helicase [Chlamydophila psittaci RD1]
 gi|325507310|gb|ADZ18948.1| holliday junction DNA helicase [Chlamydophila psittaci 6BC]
 gi|328815013|gb|EGF85002.1| holliday junction DNA helicase RuvB [Chlamydophila psittaci Cal10]
 gi|328914594|gb|AEB55427.1| Holliday junction DNA helicase RuvB [Chlamydophila psittaci 6BC]
          Length = 337

 Score =  325 bits (832), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 143/316 (45%), Positives = 207/316 (65%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           + Q+      LRP+ L+EF GQ +    L++F+ AA  R E   H LF GPPGLGKT+LA
Sbjct: 8   LHQDKKFDVSLRPKGLKEFCGQAQLTERLELFLNAAIQRGEVPGHCLFFGPPGLGKTSLA 67

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            +VA  +G      SGP + K  DL  LLT+L++ DV FIDEIHR+  + EE LY AMED
Sbjct: 68  HIVANTVGKGLIVASGPQLVKPSDLLGLLTSLQEGDVFFIDEIHRMGKVAEEYLYSAMED 127

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           +++D+ +  GP ARSV I+L+ F+L+ ATTR G+L+ PL+ RF    R+++Y  EDL TI
Sbjct: 128 YKIDITIDSGPGARSVSIDLAPFSLVGATTRSGMLSEPLRARFSFTGRVSYYSDEDLATI 187

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           ++R + L G+     A  EIA RSRGTPR+A  LLR VRDFA++     I  ++A+ AL 
Sbjct: 188 LRRSSNLLGIDADPSALYEIARRSRGTPRLANNLLRWVRDFAQMREGNCINSDVAEKALA 247

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L ID+ G +++D++ LT I   + GGPVGI+T+S  + E    +ED+ EP++I +G ++
Sbjct: 248 MLLIDEWGLNEIDIKLLTTIMDYYQGGPVGIKTLSVAVGEDIRTLEDVYEPFLILKGLLK 307

Query: 312 RTPRGRLLMPIAWQHL 327
           +T RGR++  +A+ HL
Sbjct: 308 KTSRGRMVTQLAYNHL 323


>gi|88607797|ref|YP_504790.1| Holliday junction DNA helicase B [Anaplasma phagocytophilum HZ]
 gi|123736453|sp|Q2GLG1|RUVB_ANAPZ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|88598860|gb|ABD44330.1| holliday junction DNA helicase RuvB [Anaplasma phagocytophilum HZ]
          Length = 329

 Score =  325 bits (832), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 180/323 (55%), Positives = 225/323 (69%), Gaps = 2/323 (0%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           E L       ED     LRP  +EEF GQ E   NLKVFI++A  R   LDHVL  GPPG
Sbjct: 3   ELLHQHKAIPEDERNFALRPSLIEEFVGQSEIIENLKVFIKSAYERRATLDHVLLYGPPG 62

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLA ++A+EL V+ RSTSGP+++KAGDLAA+LTNL+  DVLFIDEIHRL   +EEI
Sbjct: 63  LGKTTLAHIIAKELKVSLRSTSGPLLSKAGDLAAILTNLQPMDVLFIDEIHRLHRNIEEI 122

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LY AMED  LD++VGEG  AR+++I+L  FTL+ ATTR GL++NPL+DRFGIP+ L FY 
Sbjct: 123 LYSAMEDCCLDIVVGEGCGARTLRIDLPAFTLVGATTRFGLISNPLRDRFGIPLHLEFYS 182

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +E+L  +++R A +    + D  A EIA RSRGTPRIA RL RRVRDF  V     I   
Sbjct: 183 VEELMLVIKRAAHVICTDIDDSGAYEIASRSRGTPRIALRLFRRVRDFMVVERQSIIDNH 242

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
            AD+AL  L +DK G D++D++YL+ I        VGIETI+A LSE    IE+ IEPY+
Sbjct: 243 FADSALFNLGVDKSGLDKMDIKYLSFIYE--AKNAVGIETIAAALSEDVGNIEETIEPYL 300

Query: 305 IQQGFIQRTPRGRLLMPIAWQHL 327
           ++ GFIQRTPRGR+L   A +HL
Sbjct: 301 LKIGFIQRTPRGRILTTKAIEHL 323


>gi|113954123|ref|YP_729361.1| Holliday junction DNA helicase RuvB [Synechococcus sp. CC9311]
 gi|122945871|sp|Q0IDW1|RUVB_SYNS3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|113881474|gb|ABI46432.1| Holliday junction DNA helicase RuvB [Synechococcus sp. CC9311]
          Length = 359

 Score =  325 bits (832), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 161/313 (51%), Positives = 210/313 (67%), Gaps = 1/313 (0%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPR L+++ GQ E    L + I+AA  R EALDHVL  GPPGLGKTT+A V+A ELGV 
Sbjct: 43  LRPRRLDDYIGQRELKQVLGIAIQAAMGRGEALDHVLLYGPPGLGKTTMAMVLAEELGVT 102

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TS P + +  D+  LL NL+ ++VLFIDEIHRL+ + EE+LYPAMED +LDL VG+G
Sbjct: 103 CRITSAPALERPRDIVGLLVNLQPKEVLFIDEIHRLTRVAEELLYPAMEDRRLDLTVGKG 162

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            +AR+  + L  FTL+ ATTR G L++PL+DRFG+  RL FY  EDL+ IV R A L  L
Sbjct: 163 STARTRALELPPFTLVGATTRAGALSSPLRDRFGLIQRLEFYGQEDLQAIVMRAAGLLTL 222

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH-AKTITREIADAALLRLAIDKMGF 260
            ++ EA  EIA R RGTPRIA RLLRRVRD A V   +  I  ++ D AL    +D  G 
Sbjct: 223 QLSPEACAEIARRCRGTPRIANRLLRRVRDVACVREVSGCIDVKLVDEALTLHRVDGKGL 282

Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320
           D  D R L ++ ++ GGGPVG++T++A L E    +E ++EPY++Q GF+QRTPRGR++ 
Sbjct: 283 DASDRRLLELLLQSHGGGPVGLDTLAAALGEDPTTLEAVVEPYLLQLGFLQRTPRGRVVT 342

Query: 321 PIAWQHLGIDIPH 333
                HLG     
Sbjct: 343 AAGRGHLGWPADE 355


>gi|311894863|dbj|BAJ27271.1| putative Holliday junction ATP-dependent DNA helicase RuvB
           [Kitasatospora setae KM-6054]
          Length = 367

 Score =  325 bits (832), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 159/327 (48%), Positives = 219/327 (66%), Gaps = 1/327 (0%)

Query: 5   EGLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           + LL+ +   ED A  + LRP+ L+EF GQ      L + ++AA+ R  A DHVL  GPP
Sbjct: 16  DRLLTASADGEDQAVEAALRPKLLDEFIGQERVREQLSLVLQAARKRGAAPDHVLLSGPP 75

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTL+ ++A EL    R TSGP I  AGDLAA+L++L + +VLF+DEIHR+S   EE
Sbjct: 76  GLGKTTLSMIIAAELNAPIRITSGPAIQHAGDLAAILSSLTEGEVLFLDEIHRMSRPAEE 135

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LY AMEDF++D++VG+GP A ++ + L  FTL+ ATTR GLL  PL+DRFG    + FY
Sbjct: 136 MLYMAMEDFRVDVIVGKGPGATAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTGHMEFY 195

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
              +L+ +V R A L  + +    A EIA RSRGTPRIA RLLRRVRDFA+V H   ++R
Sbjct: 196 APAELERVVHRSAGLLDVEIDPAGAAEIAGRSRGTPRIANRLLRRVRDFAQVRHDGLVSR 255

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           EIA  AL    +D  G D+LD   L  + + FGGGPVG+ T++  + E  + +E++ EP+
Sbjct: 256 EIAARALEVYEVDARGLDRLDRAVLEALLKLFGGGPVGLSTLAVAVGEEAETVEEVAEPF 315

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGID 330
           ++++G + RTPRGR+    AWQHLG+ 
Sbjct: 316 LVREGLLARTPRGRIATAAAWQHLGLT 342


>gi|217033319|ref|ZP_03438750.1| hypothetical protein HP9810_9g72 [Helicobacter pylori 98-10]
 gi|216944260|gb|EEC23685.1| hypothetical protein HP9810_9g72 [Helicobacter pylori 98-10]
 gi|261837821|gb|ACX97587.1| Holliday junction DNA helicase [Helicobacter pylori 51]
 gi|317179218|dbj|BAJ57006.1| Holliday junction DNA helicase B [Helicobacter pylori F30]
 gi|332673235|gb|AEE70052.1| crossover junction ATP-dependent DNA helicase RuvB [Helicobacter
           pylori 83]
          Length = 336

 Score =  324 bits (831), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 157/329 (47%), Positives = 231/329 (70%), Gaps = 2/329 (0%)

Query: 4   REGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           +E +++      E +    LRP   E++ GQ +  SNL++ I AAK R E+LDH+LF GP
Sbjct: 2   KERIVNLETLDFETSQEVSLRPNLWEDYIGQEKIKSNLQISICAAKKRQESLDHMLFFGP 61

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKT+++ ++A+E+  N + T+ P+I K+GDLAA+LTNL+ +D+LFIDEIHRLS  +E
Sbjct: 62  PGLGKTSISHIIAKEMETNIKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIE 121

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMEDF+LD+++G GP+A+++KI+L  FTLI ATTR G+L+NPL+DRFG+  R+ F
Sbjct: 122 EVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQF 181

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y   +L  I+++ A      + +E+A EIA RSRGTPRIA RLL+RVRDFA V ++  + 
Sbjct: 182 YSPSELALIIKKAAAKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMD 241

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             I   AL  L ++++GFD+ DL YL+++A    G PVG+ TI+A + E    IED+IEP
Sbjct: 242 LNITLHALNELGVNELGFDEADLAYLSLLANA-QGRPVGLNTIAASMREDEGTIEDVIEP 300

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           +++  G+++RT +GR+  P     L I  
Sbjct: 301 FLLANGYLERTAKGRIATPKTHALLKIPT 329


>gi|24987361|pdb|1IXR|C Chain C, Ruva-Ruvb Complex
          Length = 312

 Score =  324 bits (831), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 172/308 (55%), Positives = 224/308 (72%), Gaps = 1/308 (0%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            LRP+TL+E+ GQ      L+V++EAAKAR E L+H+L  GPPGLGKTTLA V+A ELGV
Sbjct: 5   ALRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGV 64

Query: 81  NFRSTSGPVIAKAGDLAALLTN-LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
           N R TSGP I K GDLAA+L N LE+ D+LFIDEIHRLS   EE LYPAMEDF +D+++G
Sbjct: 65  NLRVTSGPAIEKPGDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIG 124

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199
           +GP+AR++++ L RFTLI ATTR GL+T PL  RFGI   L +Y  E+L   V R A+L 
Sbjct: 125 QGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLL 184

Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259
           G+ +T+EAA EI  RSRGT R+A RL RRVRDFA+VA  + ITRE A  AL  L +D++G
Sbjct: 185 GVRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAALGLDELG 244

Query: 260 FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLL 319
            ++ D   L ++   FGGGPVG+ T++  LSE    +E++ EPY+I+QG ++RTPRGR+ 
Sbjct: 245 LEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRTPRGRVA 304

Query: 320 MPIAWQHL 327
             +A +HL
Sbjct: 305 TELARRHL 312


>gi|210134583|ref|YP_002301022.1| Holliday junction DNA helicase RuvB [Helicobacter pylori P12]
 gi|226698778|sp|B6JKW4|RUVB_HELP2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|210132551|gb|ACJ07542.1| holliday junction DNA helicase [Helicobacter pylori P12]
          Length = 336

 Score =  324 bits (831), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 158/329 (48%), Positives = 231/329 (70%), Gaps = 2/329 (0%)

Query: 4   REGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           +E +++      E +    LRP   E+F GQ +  SNL++ I AAK R E+LDH+LF GP
Sbjct: 2   KERIVNLETLDFETSQEVSLRPNLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGP 61

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKT+++ ++A+E+  N + T+ P+I K+GDLAA+LTNL+ +D+LFIDEIHRLS  +E
Sbjct: 62  PGLGKTSISHIIAKEMETNIKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIE 121

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMEDF+LD+++G GP+A+++KI+L  FTLI ATTR G+L+NPL+DRFG+  R+ F
Sbjct: 122 EVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQF 181

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y   +L  I+++ A      + +E+A EIA RSRGTPRIA RLL+RVRDFA V ++  + 
Sbjct: 182 YSPSELSLIIKKAAVKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMD 241

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             I   AL  L ++++GFD+ DL YL+++A    G PVG+ TI+A + E    IED+IEP
Sbjct: 242 LNITLHALNELGVNELGFDEADLAYLSLLANA-QGRPVGLNTIAASMREDEGTIEDVIEP 300

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           +++  G+++RT +GR+  P     L I  
Sbjct: 301 FLLANGYLERTAKGRIATPKTHALLKIPT 329


>gi|255310842|ref|ZP_05353412.1| Holliday junction DNA helicase RuvB [Chlamydia trachomatis 6276]
 gi|255317142|ref|ZP_05358388.1| Holliday junction DNA helicase RuvB [Chlamydia trachomatis 6276s]
          Length = 334

 Score =  324 bits (831), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 140/323 (43%), Positives = 207/323 (64%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           + Q+      LRP+ L EF GQ +    L +F+ AA  R E   H LF GPPGLGKT+LA
Sbjct: 8   LHQDKKFDFSLRPKKLTEFCGQKQLKERLDLFLRAAVQRKEVPGHCLFYGPPGLGKTSLA 67

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            ++A  +G      SGP + K  DL  LLT L++ D+ FIDEIHR+    EE LYPAMED
Sbjct: 68  HIMANTIGKGLVIASGPQLLKPSDLIGLLTGLQEGDIFFIDEIHRMGKAAEEYLYPAMED 127

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F++D+ +  GP ARSV+++L+ FTL+ ATTR G+L+ PL+ RF    R+++Y  EDL +I
Sbjct: 128 FKVDITLDSGPGARSVRLDLAPFTLVGATTRAGMLSEPLRTRFAFTGRVDYYTDEDLVSI 187

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           + R ++L  +    E   EIA R+RGTPR+A  LLR VRDFA++     I   +A+ AL 
Sbjct: 188 LSRSSQLLSIEANQETLLEIARRARGTPRLANNLLRWVRDFAQMREGNCINSAVAEKALA 247

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L ID +G +++D++ L+++   + GGPVG++T++  + E    +ED+ EP++I +G +Q
Sbjct: 248 MLLIDNLGLNEIDIKLLSVMIDFYQGGPVGMKTLAMAVGEDVRTLEDMYEPFLILKGLVQ 307

Query: 312 RTPRGRLLMPIAWQHLGIDIPHR 334
           RT RGR+  P+A++HL  +   R
Sbjct: 308 RTARGRVATPLAYEHLNRNPKDR 330


>gi|15611434|ref|NP_223085.1| Holliday junction DNA helicase RuvB [Helicobacter pylori J99]
 gi|6685960|sp|Q9ZM57|RUVB_HELPJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|4154888|gb|AAD05938.1| HOLLIDAY JUNCTION DNA HELICASE RUVB [Helicobacter pylori J99]
          Length = 336

 Score =  324 bits (831), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 158/329 (48%), Positives = 231/329 (70%), Gaps = 2/329 (0%)

Query: 4   REGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           +E +++      E +    LRP   E+F GQ +  SNL++ I AAK R E+LDH+LF GP
Sbjct: 2   KERIVNLETLDFETSQEVSLRPNLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGP 61

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKT+++ ++A+E+  N + T+ P+I K+GDLAA+LTNL+ +D+LFIDEIHRLS  +E
Sbjct: 62  PGLGKTSISHIIAKEMETNIKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIE 121

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMEDF+LD+++G GP+A+++KI+L  FTLI ATTR G+L+NPL+DRFG+  R+ F
Sbjct: 122 EVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQF 181

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y   +L  I+++ A      + +E+A EIA RSRGTPRIA RLL+RVRDFA V ++  + 
Sbjct: 182 YSPSELSLIIKKAAAKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMD 241

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             I   AL  L ++++GFD+ DL YL+++A    G PVG+ TI+A + E    IED+IEP
Sbjct: 242 LSITLHALNELGVNELGFDEADLAYLSLLANA-QGRPVGLNTIAASMREDEGTIEDVIEP 300

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           +++  G+++RT +GR+  P     L I  
Sbjct: 301 FLLANGYLERTAKGRIATPKTHALLKIPT 329


>gi|15645673|ref|NP_207850.1| Holliday junction DNA helicase RuvB [Helicobacter pylori 26695]
 gi|3122841|sp|O25699|RUVB_HELPY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|2314203|gb|AAD08100.1| Holliday junction DNA helicase (ruvB) [Helicobacter pylori 26695]
          Length = 336

 Score =  324 bits (831), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 158/329 (48%), Positives = 231/329 (70%), Gaps = 2/329 (0%)

Query: 4   REGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           +E +++      E +    LRP   E+F GQ +  SNL++ I AAK R E+LDH+LF GP
Sbjct: 2   KERIVNLETLDFEISQEVSLRPSLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGP 61

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKT+++ ++A+E+  N + T+ P+I K+GDLAA+LTNL+ +D+LFIDEIHRLS  +E
Sbjct: 62  PGLGKTSISHIIAKEMETNIKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIE 121

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMEDF+LD+++G GP+A+++KI+L  FTLI ATTR G+L+NPL+DRFG+  R+ F
Sbjct: 122 EVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQF 181

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y   +L  I+++ A      +  E+A EIA RSRGTPRIA RLL+RVRDFA V ++  + 
Sbjct: 182 YNPSELALIIKKAAVKLNQDIKQESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMD 241

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             I   AL  L ++++GFD+ DL YL+++A    G PVG+ TI+A + E    IED+IEP
Sbjct: 242 LNITLHALNELGVNELGFDEADLAYLSLLANA-QGKPVGLNTIAASMREDEGTIEDVIEP 300

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           +++  G+++RT +GR+  P   + L I  
Sbjct: 301 FLLANGYLERTAKGRIATPKTHELLKIPT 329


>gi|15604759|ref|NP_219543.1| Holliday junction DNA helicase RuvB [Chlamydia trachomatis
           D/UW-3/CX]
 gi|166154261|ref|YP_001654379.1| Holliday junction DNA helicase B [Chlamydia trachomatis 434/Bu]
 gi|166155136|ref|YP_001653391.1| Holliday junction DNA helicase B [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|237804390|ref|YP_002888544.1| Holliday junction DNA helicase RuvB [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|301335510|ref|ZP_07223754.1| Holliday junction DNA helicase RuvB [Chlamydia trachomatis L2tet1]
 gi|6685939|sp|O84044|RUVB_CHLTR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|238687402|sp|B0B9E8|RUVB_CHLT2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|238687455|sp|B0BB27|RUVB_CHLTB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|3328431|gb|AAC67630.1| Holliday Junction Helicase [Chlamydia trachomatis D/UW-3/CX]
 gi|165930249|emb|CAP03735.1| Holliday junction ATP-dependent DNA helicase [Chlamydia trachomatis
           434/Bu]
 gi|165931124|emb|CAP06689.1| Holliday junction ATP-dependent DNA helicase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|231272690|emb|CAX09593.1| Holliday junction ATP-dependent DNA helicase [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|296435557|gb|ADH17731.1| Holliday junction DNA helicase RuvB [Chlamydia trachomatis G/9768]
 gi|296437417|gb|ADH19578.1| Holliday junction DNA helicase RuvB [Chlamydia trachomatis G/11074]
 gi|297139916|gb|ADH96674.1| Holliday junction DNA helicase RuvB [Chlamydia trachomatis G/9301]
 gi|297748170|gb|ADI50716.1| RuvB [Chlamydia trachomatis D-EC]
 gi|297749050|gb|ADI51728.1| RuvB [Chlamydia trachomatis D-LC]
          Length = 334

 Score =  324 bits (831), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 140/323 (43%), Positives = 207/323 (64%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           + Q+      LRP+ L EF GQ +    L +F+ AA  R E   H LF GPPGLGKT+LA
Sbjct: 8   LHQDKKFDFSLRPKKLTEFCGQKQLKERLDLFLRAAVQRNEVPGHCLFYGPPGLGKTSLA 67

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            ++A  +G      SGP + K  DL  LLT L++ D+ FIDEIHR+    EE LYPAMED
Sbjct: 68  HIMANTIGKGLVIASGPQLLKPSDLIGLLTGLQEGDIFFIDEIHRMGKAAEEYLYPAMED 127

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F++D+ +  GP ARSV+++L+ FTL+ ATTR G+L+ PL+ RF    R+++Y  EDL +I
Sbjct: 128 FKVDITLDSGPGARSVRLDLAPFTLVGATTRAGMLSEPLRTRFAFTGRVDYYTDEDLVSI 187

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           + R ++L  +    E   EIA R+RGTPR+A  LLR VRDFA++     I   +A+ AL 
Sbjct: 188 LSRSSQLLAIEANQETLLEIARRARGTPRLANNLLRWVRDFAQMREGNCINSAVAEKALA 247

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L ID +G +++D++ L+++   + GGPVG++T++  + E    +ED+ EP++I +G +Q
Sbjct: 248 MLLIDNLGLNEIDIKLLSVMIDFYQGGPVGMKTLAMAVGEDVRTLEDMYEPFLILKGLVQ 307

Query: 312 RTPRGRLLMPIAWQHLGIDIPHR 334
           RT RGR+  P+A++HL  +   R
Sbjct: 308 RTARGRVATPLAYEHLNRNPKDR 330


>gi|307637084|gb|ADN79534.1| Holliday junction DNA helicase [Helicobacter pylori 908]
          Length = 336

 Score =  324 bits (831), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 158/329 (48%), Positives = 230/329 (69%), Gaps = 2/329 (0%)

Query: 4   REGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           +E +++      E      LRP   E+F GQ +  SNL++ I AAK R E+LDH+LF GP
Sbjct: 2   KERIVNLETLDFETFQEVSLRPNLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGP 61

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKT+++ ++A+E+  N + T+ P+I K+GDLAA+LTNL+ +D+LFIDEIHRLS  +E
Sbjct: 62  PGLGKTSISHIIAKEMETNIKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIE 121

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMEDF+LD+++G GP+A+++KI+L  FTLI ATTR G+L+NPL+DRFG+  R+ F
Sbjct: 122 EVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQF 181

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y   +L  I+++ A      + +E+A EIA RSRGTPRIA RLL+RVRDFA V ++  + 
Sbjct: 182 YSPSELALIIKKAAAKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMD 241

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             I   AL  L ++++GFD+ DL YL+++A    G PVG+ TI+A + E    IED+IEP
Sbjct: 242 LNITLHALNELGVNELGFDEADLAYLSLLANA-QGKPVGLNTIAASMREDEGTIEDVIEP 300

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           +++  G+++RT +GR+  P     L I  
Sbjct: 301 FLLANGYLERTAKGRIATPKTHALLKIPT 329


>gi|254779078|ref|YP_003057183.1| Holliday junction DNA helicase RuvB [Helicobacter pylori B38]
 gi|254000989|emb|CAX28933.1| Holliday junction ATP-dependent DNA helicase [Helicobacter pylori
           B38]
          Length = 336

 Score =  324 bits (831), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 158/329 (48%), Positives = 231/329 (70%), Gaps = 2/329 (0%)

Query: 4   REGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           +E +++      E +    LRP   E+F GQ +  SNL++ I AAK R E+LDH+LF GP
Sbjct: 2   KERIVNLETLDFETSQEVSLRPSLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGP 61

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKT+++ ++A+E+  N + T+ P+I K+GDLAA+LTNL+ +D+LFIDEIHRLS  +E
Sbjct: 62  PGLGKTSISHIIAKEMETNIKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIE 121

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMEDF+LD+++G GP+A+++KI+L  FTLI ATTR G+L+NPL+DRFG+  R+ F
Sbjct: 122 EVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQF 181

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y   +L  I+++ A      + +E+A EIA RSRGTPRIA RLL+RVRDFA V ++  + 
Sbjct: 182 YSPSELALIIKKAAIKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMD 241

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             I   AL  L ++++GFD+ DL YL+++A    G PVG+ TI+A + E    IED+IEP
Sbjct: 242 LNITLHALNELGVNELGFDEADLAYLSLLANA-QGRPVGLNTIAASMREDEGTIEDVIEP 300

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           +++  G+++RT +GR+  P     L I  
Sbjct: 301 FLLANGYLERTAKGRIATPKTHALLKIPT 329


>gi|269219374|ref|ZP_06163228.1| holliday junction DNA helicase RuvB [Actinomyces sp. oral taxon 848
           str. F0332]
 gi|269211167|gb|EEZ77507.1| holliday junction DNA helicase RuvB [Actinomyces sp. oral taxon 848
           str. F0332]
          Length = 348

 Score =  324 bits (831), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 161/328 (49%), Positives = 216/328 (65%), Gaps = 1/328 (0%)

Query: 6   GLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           G++S   S+ E A  + LRPR L EF GQ    S L + +EAA AR +  DHVL  GPPG
Sbjct: 13  GIVSPAASESERAAEAALRPRQLSEFVGQETVRSQLSLVLEAAVARGKTPDHVLLSGPPG 72

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTL+ ++A E+  + R TSGP I   GDLAA+L++L++ DVLFIDEIHRL+   EE+
Sbjct: 73  LGKTTLSMIIAAEVNGSLRLTSGPAIQNPGDLAAVLSSLQENDVLFIDEIHRLARTAEEM 132

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LY AMEDF++D+MVG+GP A S+ + L  FT++ ATTR GLL  PL+DRFG    L +YE
Sbjct: 133 LYLAMEDFRVDVMVGKGPGATSIPLPLPPFTVVGATTRAGLLPAPLRDRFGFTGHLEYYE 192

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            E+L  IV R A      +  +AA EIA RSRGTPRIA RLLRRV+D+A+V     +   
Sbjct: 193 EEELALIVTRNAVKLQANLEADAAHEIASRSRGTPRIANRLLRRVQDWAQVRGNGVLDLA 252

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
            A AAL    +D+ G D+LD   L  +   F GGPVG+ T++  + E  + +E + EPY+
Sbjct: 253 AARAALDVFEVDRRGLDRLDRAVLEAVCVRFRGGPVGLTTLAVSVGEEPETVETVAEPYL 312

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           +++GF+ RTPRGR    +A+ HLG+  P
Sbjct: 313 VREGFLLRTPRGRAATRLAFDHLGLPGP 340


>gi|254430332|ref|ZP_05044035.1| Holliday junction DNA helicase RuvB [Cyanobium sp. PCC 7001]
 gi|197624785|gb|EDY37344.1| Holliday junction DNA helicase RuvB [Cyanobium sp. PCC 7001]
          Length = 361

 Score =  324 bits (831), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 160/306 (52%), Positives = 210/306 (68%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRPR L ++ GQ E    L + IEA +AR EALDHVL  GPPGLGKTT+A V+A ELGV 
Sbjct: 49  LRPRRLADYIGQGELKQVLGIAIEATRARGEALDHVLLYGPPGLGKTTMALVLAEELGVR 108

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R TS P + +  D+  LL NL+ RD+LFIDEIHRL+ + EE+LYPAMED +LDL VG+G
Sbjct: 109 CRITSAPALERPRDIVGLLVNLQPRDLLFIDEIHRLNRVAEELLYPAMEDGRLDLTVGQG 168

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            +AR+  + L  FTL+ ATTR G L++PL+DRFG+  RL FY ++DL+ IV R A L  L
Sbjct: 169 TTARTRSLPLPPFTLVGATTRAGSLSSPLRDRFGLIQRLEFYGLDDLQAIVLRAAGLLAL 228

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  +AA E+A R RGTPRIA RLLRRVRD A V+    ++  +   AL    +D  G D
Sbjct: 229 ELEADAALEVARRCRGTPRIANRLLRRVRDVAAVSGHSRVSAAVVRQALSLHRVDARGLD 288

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             D R L+++   +GGGPVG++T++AGL E    +E ++EPY++QQG +QRTPRGR+L  
Sbjct: 289 AHDRRLLSLMLEAYGGGPVGLDTLAAGLGEDPATLETVVEPYLLQQGLLQRTPRGRVLTE 348

Query: 322 IAWQHL 327
               HL
Sbjct: 349 AGRAHL 354


>gi|261839236|gb|ACX99001.1| Holliday junction DNA helicase B [Helicobacter pylori 52]
          Length = 336

 Score =  324 bits (830), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 158/329 (48%), Positives = 230/329 (69%), Gaps = 2/329 (0%)

Query: 4   REGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           +E +++      E +    LRP   E+F GQ +  SNL++ I AAK R E+LDH+LF GP
Sbjct: 2   KERIVNLETLDFETSQEVSLRPNLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGP 61

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKT+++ ++A+E+  N + T+ P+I K+GDLAA+LTNL+ +D+LFIDEIHRLS  +E
Sbjct: 62  PGLGKTSISHIIAKEMETNIKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIE 121

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMEDF+LD+++G GP+A+++KI+L  FTLI ATTR G+L+NPL+DRFG+  R+ F
Sbjct: 122 EVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQF 181

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y   +L  I+ + A      + +E+A EIA RSRGTPRIA RLL+RVRDFA V ++  + 
Sbjct: 182 YSPSELALIITKAAAKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMD 241

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             I   AL  L ++++GFD+ DL YL+++A    G PVG+ TI+A + E    IED+IEP
Sbjct: 242 LNITLHALNELGVNELGFDEADLAYLSLLANA-QGRPVGLNTIAASMREDEGTIEDVIEP 300

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           +++  G+++RT +GR+  P     L I  
Sbjct: 301 FLLANGYLERTAKGRIATPKTHALLKIPT 329


>gi|108562813|ref|YP_627129.1| Holliday junction DNA helicase RuvB [Helicobacter pylori HPAG1]
 gi|122980533|sp|Q1CUB7|RUVB_HELPH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|107836586|gb|ABF84455.1| Holliday junction DNA helicase [Helicobacter pylori HPAG1]
          Length = 336

 Score =  324 bits (830), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 158/329 (48%), Positives = 231/329 (70%), Gaps = 2/329 (0%)

Query: 4   REGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           +E +++      E +    LRP   E+F GQ +  SNL++ I AAK R E+LDH+LF GP
Sbjct: 2   KERIVNLETLDFETSQEVSLRPSLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGP 61

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKT+++ ++A+E+  N + T+ P+I K+GDLAA+LTNL+ +D+LFIDEIHRLS  +E
Sbjct: 62  PGLGKTSISHIIAKEMETNIKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIE 121

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMEDF+LD+++G GP+A+++KI+L  FTLI ATTR G+L+NPL+DRFG+  R+ F
Sbjct: 122 EVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQF 181

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y   +L  I+++ A      + +E+A EIA RSRGTPRIA RLL+RVRDFA V ++  + 
Sbjct: 182 YSPSELALIIKKAAIKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMD 241

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             I   AL  L ++++GFD+ DL YL+++A    G PVG+ TI+A + E    IED+IEP
Sbjct: 242 LNITLHALNELGVNELGFDEADLAYLSLLANA-QGRPVGLNTIAASMREDEGTIEDVIEP 300

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           +++  G+++RT +GR+  P     L I  
Sbjct: 301 FLLANGYLERTAKGRIATPKTHALLKIPT 329


>gi|239933509|ref|ZP_04690462.1| Holliday junction DNA helicase RuvB [Streptomyces ghanaensis ATCC
           14672]
 gi|291441881|ref|ZP_06581271.1| holliday junction DNA helicase B [Streptomyces ghanaensis ATCC
           14672]
 gi|291344776|gb|EFE71732.1| holliday junction DNA helicase B [Streptomyces ghanaensis ATCC
           14672]
          Length = 383

 Score =  324 bits (830), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 158/327 (48%), Positives = 215/327 (65%), Gaps = 1/327 (0%)

Query: 6   GLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
            L+  +   ED  +   LRP  L+ F GQ      L + + AA+AR    DHVLF G PG
Sbjct: 23  RLVGADADGEDRAVEAPLRPTDLDGFIGQERVREQLDLVLRAARARGATADHVLFSGAPG 82

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTL+ ++A E+G  FR TSGP I  AGDLAA+L++L + +VLF+DEIHR+S   EE+
Sbjct: 83  LGKTTLSMIIAAEMGAPFRITSGPAIQHAGDLAAVLSSLTEGEVLFLDEIHRMSRSAEEM 142

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LY AMEDF++D++VG G  A  + + L  FTL+ ATTR GLL  PL+DRFG    + FY 
Sbjct: 143 LYMAMEDFRVDVVVGTGLGATPIPLELPPFTLVGATTRAGLLVPPLRDRFGFTAHMEFYA 202

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
             +L+ ++ R A+L  +A+  E A EIA RSRGTPRIA RLLRRVRD+A+V     +TRE
Sbjct: 203 PAELERVIHRSARLLDVAIEPEGAAEIAGRSRGTPRIANRLLRRVRDYAQVKADGVVTRE 262

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +A AAL    ID  G D+LD   L  +   FGGGPVG+ T++  + E R+ +E++ EP++
Sbjct: 263 VASAALAVYEIDGRGLDRLDRAVLGALLSLFGGGPVGLSTLAVAVGEERETVEEVAEPFL 322

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           +++G + RTPRGR+  P AW HLG+  
Sbjct: 323 VREGLLARTPRGRVATPAAWAHLGLAP 349


>gi|152990121|ref|YP_001355843.1| Holliday junction DNA helicase RuvB [Nitratiruptor sp. SB155-2]
 gi|166231506|sp|A6Q1X7|RUVB_NITSB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|151421982|dbj|BAF69486.1| holliday junction DNA helicase RuvB [Nitratiruptor sp. SB155-2]
          Length = 335

 Score =  324 bits (830), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 165/328 (50%), Positives = 230/328 (70%), Gaps = 2/328 (0%)

Query: 5   EGLLS-RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E ++     S+E +  + LRP   +E+ GQ +  +NLKVFI+A K R E LDHVLF GPP
Sbjct: 2   ERIVEVEKFSEESSFETTLRPSDWDEYIGQEKIKNNLKVFIQACKKRGETLDHVLFFGPP 61

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTL+ ++A ++  N + T+ P+I K+GDLAA+LTNLE+ D+LFIDEIHRLS  +EE
Sbjct: 62  GLGKTTLSLIIASQMEANIKITAAPMIEKSGDLAAILTNLEEGDILFIDEIHRLSPAIEE 121

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILYPAMEDF+LD+++G GP+A+++KI+L +FTLI ATTR G+L++PL+DRFG+  RL FY
Sbjct: 122 ILYPAMEDFRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSSPLRDRFGMHFRLQFY 181

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
             ++L  I+   A      +  EAA EIA RSRGTPRIA RLL+RVRDF++VA  KTIT 
Sbjct: 182 TPQELAQIITNAANKLSKDIDAEAALEIAKRSRGTPRIALRLLKRVRDFSDVADEKTITL 241

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           +    AL  L +D+ GFD+L    L  +  +  G P+G+ TI+A LSE    IED+IEP+
Sbjct: 242 KRTQKALEALGVDERGFDEL-DLKLLKLLADAKGKPLGLSTIAAALSEDEGTIEDVIEPF 300

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           ++  G+++RT RGR+     ++ L +  
Sbjct: 301 LLANGYLERTARGRMATLKTYEILKLTP 328


>gi|148238521|ref|YP_001223908.1| Holliday junction DNA helicase B [Synechococcus sp. WH 7803]
 gi|166231564|sp|A5GI46|RUVB_SYNPW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|147847060|emb|CAK22611.1| Holliday junction DNA helicase [Synechococcus sp. WH 7803]
          Length = 365

 Score =  323 bits (829), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 159/318 (50%), Positives = 211/318 (66%), Gaps = 1/318 (0%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A    LRP+ L ++ GQ E    L + ++AA  R EALDHVL  GPPGLGKTT+A V+A 
Sbjct: 44  AKEDSLRPKRLADYIGQRELKQVLGIAVQAAVGRGEALDHVLLYGPPGLGKTTMAMVLAE 103

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           ELGV  R TS P + +  D+  LL  L+ +D+LFIDEIHRLS + EE+LYPAMED +LDL
Sbjct: 104 ELGVTCRITSAPALERPRDIVGLLVTLQPKDLLFIDEIHRLSRVAEELLYPAMEDRRLDL 163

Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA 196
            VG+G +AR+  ++L  FTL+ ATTR G L++PL+DRFG+  RL FY +EDL+ IV+R A
Sbjct: 164 TVGKGSTARTRALDLPPFTLVGATTRAGALSSPLRDRFGLIQRLEFYGLEDLQAIVERAA 223

Query: 197 KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH-AKTITREIADAALLRLAI 255
            L  L ++  A  EIA R RGTPRIA RLLRRVRD A V   A  I + + D AL    +
Sbjct: 224 GLLDLDLSAAACTEIARRCRGTPRIANRLLRRVRDVACVRACAGRIDQALVDEALTLHRV 283

Query: 256 DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR 315
           D  G D  D R + ++ ++ GGGP G++T++A L E    +E ++EPY++Q GF+QRTPR
Sbjct: 284 DGRGLDASDRRLMELLLQSHGGGPAGLDTLAAALGEDPATLESVVEPYLLQLGFLQRTPR 343

Query: 316 GRLLMPIAWQHLGIDIPH 333
           GR++      HLG   P 
Sbjct: 344 GRVVTAAGRGHLGWPYPQ 361


>gi|62185021|ref|YP_219806.1| Holliday junction DNA helicase B [Chlamydophila abortus S26/3]
 gi|81312811|sp|Q5L686|RUVB_CHLAB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|62148088|emb|CAH63845.1| holliday junction DNA helicase [Chlamydophila abortus S26/3]
          Length = 337

 Score =  323 bits (829), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 142/316 (44%), Positives = 206/316 (65%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           + Q+      LRP+ L+EF GQ +    L++F+ AA  R E   H LF GPPGLGKT+LA
Sbjct: 8   LHQDKKFDVSLRPKGLKEFCGQAQLTERLELFLNAAIQRGEVPGHCLFFGPPGLGKTSLA 67

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            +VA  +G      SGP + K  DL  LLT+L++ DV FIDEIHR+  + EE LY AMED
Sbjct: 68  HIVANTVGKGLLVASGPQLVKPSDLLGLLTSLQEGDVFFIDEIHRMGKVAEEYLYSAMED 127

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           +++D+ +  GP ARSV ++L+ F+L+ ATTR G+L+ PL+ RF    R+ +Y  EDL TI
Sbjct: 128 YKIDITIDSGPGARSVSVDLAPFSLVGATTRSGMLSEPLRARFSFTGRVAYYSDEDLATI 187

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           ++R + L G+     A  EIA RSRGTPR+A  LLR VRDFA++     I  ++A+ AL 
Sbjct: 188 LRRSSNLLGIDADASALYEIARRSRGTPRLANNLLRWVRDFAQMREGNCINSDVAEKALA 247

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L ID+ G +++D++ LT I   + GGPVGI+T+S  + E    +ED+ EP++I +G ++
Sbjct: 248 MLLIDEWGLNEIDIKLLTTIMNYYQGGPVGIKTLSVAVGEDVRTLEDVYEPFLILKGLLK 307

Query: 312 RTPRGRLLMPIAWQHL 327
           +T RGR++  +A+ HL
Sbjct: 308 KTSRGRMVTQLAYNHL 323


>gi|315638163|ref|ZP_07893345.1| crossover junction ATP-dependent DNA helicase RuvB [Campylobacter
           upsaliensis JV21]
 gi|315481699|gb|EFU72321.1| crossover junction ATP-dependent DNA helicase RuvB [Campylobacter
           upsaliensis JV21]
          Length = 350

 Score =  323 bits (829), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 164/331 (49%), Positives = 234/331 (70%), Gaps = 2/331 (0%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           +MDR   + +  S ++   S LRP   + + GQ     NL +FI AAK R E LDH+LF 
Sbjct: 15  IMDRIVEIEK-FSSDETYESSLRPSNFDGYIGQDNIKKNLHIFINAAKKRGECLDHILFS 73

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GP GLGKTTLA ++A E+G N ++T+ P+I K+GDLAA+LTNL + DVLFIDEIHRLS  
Sbjct: 74  GPAGLGKTTLANIIATEMGANIKTTAAPMIEKSGDLAAILTNLSEGDVLFIDEIHRLSPA 133

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +EE+LYPAMEDF+LD+++G GP+A+++KI+L +FTLI ATTR G+L+NPL+DRFG+  RL
Sbjct: 134 IEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRL 193

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY+ E+L  I+Q+ A        ++AA EIA RSR TPRIA RLL+RVRDFA+V   + 
Sbjct: 194 EFYKNEELALILQKAALKLNKNCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEN 253

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I+   A  AL  L ++++GFD +DLRYL ++  +  G  +G+ +I+A LSE  + +ED+I
Sbjct: 254 ISLVRAYEALNSLGVNELGFDSMDLRYLELL-TSAKGKAMGLASIAAALSEDENTVEDVI 312

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           EPY++  G+I+RT +GR+    ++  L ++ 
Sbjct: 313 EPYLLANGYIERTAKGRIASIKSYHTLKLNY 343


>gi|124026772|ref|YP_001015887.1| Holliday junction DNA helicase B [Prochlorococcus marinus str.
           NATL1A]
 gi|166231536|sp|A2C563|RUVB_PROM1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|123961840|gb|ABM76623.1| Holliday junction DNA helicase RuvB [Prochlorococcus marinus str.
           NATL1A]
          Length = 356

 Score =  323 bits (829), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 154/334 (46%), Positives = 231/334 (69%), Gaps = 4/334 (1%)

Query: 4   REGLLSRNVSQEDADIS---LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
            E L+  ++ +E+  +S    LRP++ ++F GQ E    L++ ++A+  R EALDH++  
Sbjct: 19  EERLVGPSLLREELKLSQQDSLRPKSFDDFVGQSELKKVLEISVKASLKRGEALDHLMLY 78

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTT+A V+A ELGV  R TS P + +  D+  LL N++ R+++F+DEIHRL+ I
Sbjct: 79  GPPGLGKTTMALVIAEELGVKARVTSAPALERPRDIVGLLINMQPRELIFVDEIHRLNRI 138

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            +E+LYPAMED +LDL VG+G S+R   I +  FTL+ ATT+   L++P++DRFGI  RL
Sbjct: 139 SQELLYPAMEDRRLDLTVGKGTSSRMRSIEIPPFTLVGATTKPAALSSPMRDRFGITQRL 198

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV-AHAK 239
           +FY   DL+ I++R AKL  L +++EA+ ++A R RGTPRIA RL+RRVRD+AEV +H+K
Sbjct: 199 DFYNYLDLENIIKRSAKLINLVISEEASQQLAKRCRGTPRIANRLIRRVRDYAEVYSHSK 258

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  E+ + AL    +D+ G D  D  Y+ ++   + GGPVG+ET++AGL E    +E +
Sbjct: 259 KIDVEVVNDALDLHRVDQRGLDATDRSYIGLLVNQYQGGPVGLETLAAGLGEDSTTLETV 318

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +EPY++Q GF+QRT RGR++ P A +H  +  P+
Sbjct: 319 VEPYLMQIGFLQRTSRGRVVTPAAKKHYLLTSPN 352


>gi|149918263|ref|ZP_01906755.1| hypothetical protein PPSIR1_11660 [Plesiocystis pacifica SIR-1]
 gi|149821023|gb|EDM80430.1| hypothetical protein PPSIR1_11660 [Plesiocystis pacifica SIR-1]
          Length = 361

 Score =  323 bits (829), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 163/313 (52%), Positives = 210/313 (67%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            LRPR+ +E+ GQ    + L+V+++AAK R E LDHVL  GPPGLGKTTLAQ+VA E+GV
Sbjct: 29  ALRPRSFDEYVGQRALITKLRVYVQAAKQRDEPLDHVLLHGPPGLGKTTLAQIVAHEMGV 88

Query: 81  NFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
              +TSGP I   G LA LLT L + +VLFIDE+HR+S  VEE LY AMED ++D+ VGE
Sbjct: 89  VLHTTSGPAIEHKGVLAGLLTGLGEGEVLFIDEVHRMSPTVEESLYSAMEDRRIDIPVGE 148

Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
           G +A +  I+L+ FTL+ ATTR  LL+ PL+DRF I   L FY  E+L  IV+R A L G
Sbjct: 149 GSAAITHSISLAPFTLVGATTRTALLSAPLRDRFHIVEGLRFYTDEELAAIVERSASLLG 208

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGF 260
           L  + E A EI  RSRGTPRIA RL RRVRDF++VA  + IT   A   L  L +D +G 
Sbjct: 209 LPASPEGALEIGRRSRGTPRIANRLTRRVRDFSQVAGHERITAADAARFLDTLEVDDLGL 268

Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320
           +  D   LT +   F GGPVG++ ++A +  PRD IED+ EP+++Q+G + RTPRGR+  
Sbjct: 269 NVSDRSILTTMLELFSGGPVGVDALAASVGMPRDTIEDVHEPFLLQRGLVVRTPRGRMTT 328

Query: 321 PIAWQHLGIDIPH 333
             A  HLG   PH
Sbjct: 329 AKAADHLGRPDPH 341


>gi|308184190|ref|YP_003928323.1| Holliday junction DNA helicase RuvB [Helicobacter pylori SJM180]
 gi|308060110|gb|ADO02006.1| Holliday junction DNA helicase RuvB [Helicobacter pylori SJM180]
          Length = 336

 Score =  323 bits (829), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 158/329 (48%), Positives = 231/329 (70%), Gaps = 2/329 (0%)

Query: 4   REGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           +E +++      E +    LRP   E+F GQ +  SNL++ I AAK R E+LDH+LF GP
Sbjct: 2   KERIVNLETLDFETSQEVSLRPNLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGP 61

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKT+++ ++A+E+  N + T+ P+I K+GDLAA+LTNL+ +D+LFIDEIHRLS  +E
Sbjct: 62  PGLGKTSISHIIAKEMETNIKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIE 121

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMEDF+LD+++G GP+A+++KI+L  FTLI ATTR G+L+NPL+DRFG+  R+ F
Sbjct: 122 EVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQF 181

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y   +L  I+++ A      + +E+A EIA RSRGTPRIA RLL+RVRDFA V ++  + 
Sbjct: 182 YSPSELALIIKKVAVKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMD 241

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             I   AL  L ++++GFD+ DL YL+++A    G PVG+ TI+A + E    IED+IEP
Sbjct: 242 LNITLHALNELGVNELGFDEADLAYLSLLANA-QGKPVGLNTIAASMREDEGTIEDVIEP 300

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           +++  G+++RT +GR+  P     L I  
Sbjct: 301 FLLANGYLERTAKGRIATPKTHALLKIPT 329


>gi|170078004|ref|YP_001734642.1| Holliday junction DNA helicase RuvB [Synechococcus sp. PCC 7002]
 gi|238692802|sp|B1XMA0|RUVB_SYNP2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|169885673|gb|ACA99386.1| Holliday junction DNA helicase RuvB [Synechococcus sp. PCC 7002]
          Length = 363

 Score =  323 bits (829), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 160/335 (47%), Positives = 221/335 (65%), Gaps = 4/335 (1%)

Query: 4   REGLLSRNVSQED----ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           R+ L +     ED    A+   +RP+ L ++ GQ +    L + I AAKAR E LDH+L 
Sbjct: 21  RDALTTSQALPEDQEQSANEDRIRPQRLGDYLGQKDLKEVLGIAIAAAKARREPLDHMLL 80

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTT++ ++A E+GVN + T+ P + +  D++ LL  LE  D+LFIDEIHRL+ 
Sbjct: 81  YGPPGLGKTTMSLILAAEMGVNCKITAAPALERPRDISGLLVGLEAGDILFIDEIHRLNR 140

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           + EE+LYPAMED +LD+ +G+G SAR+  I L  FTLI ATT+VG LT+PL+DRFG+  R
Sbjct: 141 MAEELLYPAMEDGRLDVTIGKGVSARTRSIPLKPFTLIGATTKVGALTSPLRDRFGLIQR 200

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FYE+++L  IV R A +    +T E A EIA R+RGTPRIA RLLRR+RD+A+V    
Sbjct: 201 LRFYEVDELIAIVHRSALILEQPITPEGALEIARRARGTPRIANRLLRRIRDYAQVKGYG 260

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I++ +A  AL    +D +G D  D   L  +  +FGGGPVG+E I+A   E    IE++
Sbjct: 261 EISQTVAATALDLYNVDALGLDWTDRLILETMLNHFGGGPVGLEAIAAATGEDSKTIEEV 320

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
            EPY++Q GF+ RTPRGR++   A QHLG+    +
Sbjct: 321 YEPYLLQIGFLNRTPRGRIVSAKARQHLGLIPVEQ 355


>gi|29840168|ref|NP_829274.1| Holliday junction DNA helicase B [Chlamydophila caviae GPIC]
 gi|33301623|sp|Q823K4|RUVB_CHLCV RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|29834516|gb|AAP05152.1| Holliday junction DNA helicase RuvB [Chlamydophila caviae GPIC]
          Length = 337

 Score =  323 bits (828), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 143/316 (45%), Positives = 205/316 (64%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           + Q+      LRP+ L EF GQ +    L++F+ AA  R E   H LF GPPGLGKT+LA
Sbjct: 8   LHQDKKFDISLRPKGLREFCGQKQLTERLELFLHAAVQRGEVPGHCLFFGPPGLGKTSLA 67

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            +VA  +G      SGP + K  DL  LLT+L++ DV FIDEIHR+  + EE LY AMED
Sbjct: 68  HIVAHTVGKGLVVASGPQLVKPSDLLGLLTSLQEGDVFFIDEIHRMGKVAEEYLYSAMED 127

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           +++D+ +  GP ARSV ++L+ F+L+ ATTR G+L+ PL+ RF    R+++Y  EDL TI
Sbjct: 128 YKIDITIDSGPGARSVSVDLAPFSLVGATTRSGMLSEPLRARFSFTGRMSYYSDEDLTTI 187

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           ++R + L G+     A  EIA RSRGTPR+A  LLR VRDFA++     I  ++A+ AL 
Sbjct: 188 LKRSSNLLGIDADTAALYEIARRSRGTPRLANNLLRWVRDFAQMREGNCINSDVAEKALA 247

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L ID  G +++D++ LT I   + GGPVGI+T+S  + E    +ED+ EP++I +G ++
Sbjct: 248 MLLIDDWGLNEIDIKLLTTIIDYYQGGPVGIKTLSVAVGEDIKTLEDVYEPFLILKGLLK 307

Query: 312 RTPRGRLLMPIAWQHL 327
           +T RGR++  IA+ HL
Sbjct: 308 KTSRGRMVTQIAYNHL 323


>gi|254443663|ref|ZP_05057139.1| Holliday junction DNA helicase RuvB [Verrucomicrobiae bacterium
           DG1235]
 gi|198257971|gb|EDY82279.1| Holliday junction DNA helicase RuvB [Verrucomicrobiae bacterium
           DG1235]
          Length = 339

 Score =  323 bits (828), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 152/312 (48%), Positives = 212/312 (67%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
            SLLRP + +EF GQ +    LK+   AA+ R E L+H+L  GPPGLGKT+L+ ++  E+
Sbjct: 25  ESLLRPPSFDEFVGQSKTVERLKIMSGAARKRGEPLNHILLSGPPGLGKTSLSFILGAEM 84

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138
           G N R TSGPV+ KAGDLA +LTNLE+ D+LFIDEIHR+   VEE LY AMED+ +D+M+
Sbjct: 85  GRNVRITSGPVVEKAGDLAGMLTNLEEGDILFIDEIHRIPKTVEEYLYSAMEDYCIDIMI 144

Query: 139 GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKL 198
            +GP+ARSV++N+ RFTL+ ATTR GLLT PL+ RF +  RL++Y  EDL  IV R  KL
Sbjct: 145 DQGPNARSVRLNIPRFTLVGATTRNGLLTAPLRSRFTLQTRLDYYGPEDLLKIVTRTCKL 204

Query: 199 TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKM 258
             + +  +   EIA R+RGTPRIA  L+  VRD+AE     TIT+  A AAL  L ID +
Sbjct: 205 LNVPLDTDGGLEIARRARGTPRIANNLVNFVRDYAEEKGNGTITKATAQAALELLEIDAL 264

Query: 259 GFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRL 318
           G D++D R L ++A  +   PVG+ T++  + E    +E++ EP++IQ G IQRT +GR+
Sbjct: 265 GLDEMDKRLLRVMATTYNSRPVGLNTLAVAVGEESHTLEEVHEPFLIQSGLIQRTAQGRI 324

Query: 319 LMPIAWQHLGID 330
           +     + +G++
Sbjct: 325 ITGDGLRAIGLE 336


>gi|318042849|ref|ZP_07974805.1| Holliday junction DNA helicase RuvB [Synechococcus sp. CB0101]
          Length = 362

 Score =  323 bits (828), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 158/324 (48%), Positives = 213/324 (65%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
            E   + +          LRPR L ++ GQ E    L + +EA +AR EALDHVL  GPP
Sbjct: 30  SEESTTTSPEAPIQREDSLRPRRLADYIGQRELKQVLGIAVEATRAREEALDHVLLYGPP 89

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTT+A V+A ELGV  R TS P + +  D+  LL NLE R++LFIDEIHRL+ + EE
Sbjct: 90  GLGKTTMALVLAEELGVRCRITSAPALERPRDIVGLLVNLEPRELLFIDEIHRLNRVAEE 149

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILYPAMEDF+LDL VG+G +AR+  + ++ FTL+ ATTR G L++PL+DRFG+  RL FY
Sbjct: 150 ILYPAMEDFRLDLTVGKGTTARTRSLPIAPFTLVGATTRAGSLSSPLRDRFGLIQRLEFY 209

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            ++DL+ IV R A L  + +   AA E+A R RGTPRIA RLLRRVRD A V     ++ 
Sbjct: 210 GLDDLQAIVLRAAGLLQIELDSSAALEVARRCRGTPRIANRLLRRVRDVAAVGGHGRVSP 269

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           ++   AL    +D  G D  D R L ++   +GGGPVG++T++AGL E    +E ++EP+
Sbjct: 270 DLVHEALSLHRVDGRGLDASDRRLLHLLQHGYGGGPVGLDTLAAGLGEDPATLEAVVEPF 329

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHL 327
           ++QQG +QRTPRGR++      HL
Sbjct: 330 LLQQGLLQRTPRGRVITEAGLAHL 353


>gi|208434335|ref|YP_002266001.1| Holliday junction DNA helicase [Helicobacter pylori G27]
 gi|226698779|sp|B5ZAF5|RUVB_HELPG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|208432264|gb|ACI27135.1| Holliday junction DNA helicase [Helicobacter pylori G27]
          Length = 336

 Score =  323 bits (828), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 158/329 (48%), Positives = 231/329 (70%), Gaps = 2/329 (0%)

Query: 4   REGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           +E +++      E +    LRP   E+F GQ +  SNL++ I AAK R E+LDH+LF GP
Sbjct: 2   KERIVNLETLDFETSQEVSLRPNLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGP 61

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKT+++ ++A+E+  N + T+ P+I K+GDLAA+LTNL+ +D+LFIDEIHRLS  +E
Sbjct: 62  PGLGKTSISHIIAKEMETNIKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIE 121

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMEDF+LD+++G GP+A+++KI+L  FTLI ATTR G+L+NPL+DRFG+  R+ F
Sbjct: 122 EVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQF 181

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y   +L  I+++ A      + +E+A EIA RSRGTPRIA RLL+RVRDFA V ++  + 
Sbjct: 182 YSPSELALIIKKAAVKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMD 241

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             I   AL  L ++++GFD+ DL YL+++A    G PVG+ TI+A + E    IED+IEP
Sbjct: 242 LNITLHALNELGVNELGFDEADLAYLSLLANA-QGKPVGLNTIAASMREDEGTIEDMIEP 300

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           +++  G+++RT +GR+  P     L I  
Sbjct: 301 FLLANGYLERTAKGRIATPKTHALLKIPT 329


>gi|269123851|ref|YP_003306428.1| Holliday junction DNA helicase RuvB [Streptobacillus moniliformis
           DSM 12112]
 gi|268315177|gb|ACZ01551.1| Holliday junction DNA helicase RuvB [Streptobacillus moniliformis
           DSM 12112]
          Length = 334

 Score =  323 bits (827), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 158/331 (47%), Positives = 219/331 (66%), Gaps = 4/331 (1%)

Query: 4   REGLLSRNVSQED----ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
               +  N   ED     +I+ LRP+  +++ GQ +    L + I+AAK R EALDH+L 
Sbjct: 2   ENRFVDLNEMLEDYEISNEINSLRPQLFKDYIGQEDLKETLSISIKAAKIRQEALDHILL 61

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTT+A V+A E+G N + TSGPV+ KAGDL ++LT LED DVLFIDEIHRLS 
Sbjct: 62  FGPPGLGKTTMATVIANEMGTNIKITSGPVLEKAGDLVSILTTLEDGDVLFIDEIHRLST 121

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            +EEILY AMEDF++D+M+G+G  A S ++ L RFTLI ATT  G L+ P +DRFGI  R
Sbjct: 122 NIEEILYSAMEDFKVDIMLGKGHGATSYRVELKRFTLIGATTMAGKLSKPFKDRFGIQHR 181

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           +NFY  E+L  I+ R A + G+   + +  +IA+RSRGTPR+A R+L+R RD+A V    
Sbjct: 182 MNFYTTEELMKIISRSANILGVECRENSLRDIALRSRGTPRLANRVLKRSRDYATVNGNG 241

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  EI    +  L +D  G D++D   L  I  N+ GGPVG+ET++  L E R  IE++
Sbjct: 242 IINDEIMKEVIRILKVDDRGLDEMDRSLLRSIIINYSGGPVGVETLATHLGEDRKTIEEV 301

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
            EPY+IQ G ++ + RGR +  +A+ H+G++
Sbjct: 302 YEPYLIQLGLLKISLRGREVTDLAYTHMGLE 332


>gi|15834930|ref|NP_296689.1| Holliday junction DNA helicase B [Chlamydia muridarum Nigg]
 gi|270285100|ref|ZP_06194494.1| Holliday junction DNA helicase RuvB [Chlamydia muridarum Nigg]
 gi|270289122|ref|ZP_06195424.1| Holliday junction DNA helicase RuvB [Chlamydia muridarum Weiss]
 gi|301336496|ref|ZP_07224698.1| Holliday junction DNA helicase RuvB [Chlamydia muridarum MopnTet14]
 gi|13431874|sp|Q9PKZ8|RUVB_CHLMU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|7190351|gb|AAF39175.1| Holliday junction DNA helicase RuvB [Chlamydia muridarum Nigg]
          Length = 330

 Score =  323 bits (827), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 141/323 (43%), Positives = 206/323 (63%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           + Q+      LRP+ L EF GQ +    L +F+ AA  R E   H LF GPPGLGKT+LA
Sbjct: 8   LHQDKKFDFSLRPKKLTEFYGQKQLKERLDLFLRAAVQRKEVPGHCLFYGPPGLGKTSLA 67

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            ++A  +G      SGP + K  DL  LLT L++ DV FIDEIHR+    EE LYPAMED
Sbjct: 68  HIMANTVGKGLVIASGPQLLKPSDLIGLLTGLQEGDVFFIDEIHRMGKTAEEYLYPAMED 127

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F++D+ +  GP ARSV+++L+ FTL+ ATTR G+L+ PL+ RF    R+++Y  EDL  I
Sbjct: 128 FKVDITLDSGPGARSVRLDLAPFTLVGATTRAGMLSEPLRTRFAFTGRVDYYNEEDLVAI 187

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           + R A+L  +    E   EIA R+RGTPR+A  LLR VRDFA++     I   +A+ AL 
Sbjct: 188 LSRSAQLLSIEANKETLLEIARRARGTPRLANNLLRWVRDFAQMREGNCINSVVAEKALA 247

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L ID +G +++D++ L+++   + GGPVG++T++  + E    +ED+ EP++I +G +Q
Sbjct: 248 MLLIDNLGLNEIDIKLLSVMIDFYQGGPVGMKTLAMAVGEDVRTLEDMYEPFLILKGLVQ 307

Query: 312 RTPRGRLLMPIAWQHLGIDIPHR 334
           RT RGR+  P+A++HL  +   +
Sbjct: 308 RTARGRVATPLAYEHLNRNPKDK 330


>gi|88808206|ref|ZP_01123717.1| Holliday junction DNA helicase RuvB [Synechococcus sp. WH 7805]
 gi|88788245|gb|EAR19401.1| Holliday junction DNA helicase RuvB [Synechococcus sp. WH 7805]
          Length = 361

 Score =  323 bits (827), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 157/313 (50%), Positives = 210/313 (67%), Gaps = 1/313 (0%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              LRP+ L ++ GQ E    L + ++AA  R EALDHVL  GPPGLGKTT+A V+A EL
Sbjct: 42  EDSLRPKRLADYIGQRELKQVLGIAVQAAIGRGEALDHVLLYGPPGLGKTTMAMVLAEEL 101

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138
           GV  R TS P + +  D+  LL NL+ +D+LFIDEIHRLS + EE+LYPAMED +LDL V
Sbjct: 102 GVTCRITSAPALERPRDIVGLLVNLQPKDLLFIDEIHRLSRVAEELLYPAMEDRRLDLTV 161

Query: 139 GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKL 198
           G+G +AR+  ++L  FTL+ ATTR G L++PL+DRFG+  RL FY +EDL+ IV+R A L
Sbjct: 162 GKGSTARTRALDLPPFTLVGATTRAGALSSPLRDRFGLIQRLEFYGLEDLQAIVERAAGL 221

Query: 199 TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH-AKTITREIADAALLRLAIDK 257
             L +++ A  EIA R RGTPRIA RLLRRVRD A V      I + + D AL    +D 
Sbjct: 222 LNLELSEAACTEIARRCRGTPRIANRLLRRVRDVACVRACEGCIDQHLVDEALTLHRVDG 281

Query: 258 MGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317
            G D  D R + ++ ++ GGGP G++T++A L E    +E ++EPY++Q GF+QRTPRGR
Sbjct: 282 RGLDASDRRLMELLLQSHGGGPAGLDTLAAALGEDPSTLESVVEPYLLQLGFLQRTPRGR 341

Query: 318 LLMPIAWQHLGID 330
           ++      HLG  
Sbjct: 342 VVTAAGRGHLGWP 354


>gi|217031615|ref|ZP_03437120.1| hypothetical protein HPB128_21g173 [Helicobacter pylori B128]
 gi|298736671|ref|YP_003729199.1| Holliday junction DNA helicase RuvB [Helicobacter pylori B8]
 gi|216946815|gb|EEC25411.1| hypothetical protein HPB128_21g173 [Helicobacter pylori B128]
 gi|298355863|emb|CBI66735.1| holliday junction DNA helicase RuvB [Helicobacter pylori B8]
          Length = 336

 Score =  323 bits (827), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 157/329 (47%), Positives = 230/329 (69%), Gaps = 2/329 (0%)

Query: 4   REGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           +E +++      E +    LRP   E+F GQ +  SNL++ I AAK R E+LDH+LF GP
Sbjct: 2   KERIVNLETLDFEISQEVSLRPSLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGP 61

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKT+++ ++A+E+  N + T+ P+I K+GDLAA+LTNL+ +D+LFIDEIHRLS  +E
Sbjct: 62  PGLGKTSISHIIAKEMETNIKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIE 121

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMEDF+LD+++G GP+A+++KI+L  FTLI ATTR G+L+NPL+DRFG+  R+ F
Sbjct: 122 EVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQF 181

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y   +L  I+++ A      + +E+  EIA RSRGTPRIA RLL+RVRDFA V ++  + 
Sbjct: 182 YSPSELALIIKKAAAKLNQDIKEESTDEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMD 241

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             I   AL  L ++++GFD+ DL YL+++A    G PVG+ TI+A + E    IED+IEP
Sbjct: 242 LNITLHALNELGVNELGFDEADLAYLSLLANA-QGKPVGLNTIAASMREDEGTIEDVIEP 300

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           +++  G+++RT +GR+  P     L I  
Sbjct: 301 FLLANGYLERTAKGRIATPKTHALLKIPT 329


>gi|119952828|ref|YP_945037.1| Holliday junction DNA helicase RuvB [Borrelia turicatae 91E135]
 gi|119861599|gb|AAX17367.1| Holliday junction DNA helicase RuvB [Borrelia turicatae 91E135]
          Length = 347

 Score =  322 bits (826), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 144/315 (45%), Positives = 209/315 (66%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           D + S LRP++L++F  Q     NL +FI+A++ R EALDHV   GPPGLGKTTLA ++A
Sbjct: 19  DRNESELRPKSLKDFVRQSHIKENLNIFIKASRDRNEALDHVFLSGPPGLGKTTLASIIA 78

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
            E+    + TS P + K  D+  +LT L+D+ +LFIDEIHRL  ++EE+LY AMED+++D
Sbjct: 79  FEMNTTIKMTSAPALDKPKDIVGILTTLDDKSILFIDEIHRLKPVIEEMLYIAMEDYKID 138

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
            ++G+GP+AR+V++ + +FTLI ATT+ G + +PL  RFGI  R + Y  ++L  I+QR 
Sbjct: 139 WIIGQGPAARTVRMPIPKFTLIGATTKPGKVASPLYARFGIVFRFDLYNEDELVKIIQRN 198

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255
           + +  + + D+AA  +A  SRGTPR+A RLLRR+RDFA+V     IT  I  + L  L I
Sbjct: 199 SIILNVKLEDKAAWLLARSSRGTPRVANRLLRRMRDFAQVGGYGLITESIVSSGLEMLKI 258

Query: 256 DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR 315
           D  G D+ D   L  +   F GGPVG+ET++  + E  D++ED  EPY+I +G I+RT R
Sbjct: 259 DHKGLDEQDRNILRSLILKFKGGPVGVETLAISVGETADSLEDFYEPYLILKGLIERTSR 318

Query: 316 GRLLMPIAWQHLGID 330
           GR     A+ HL ++
Sbjct: 319 GRKATDFAYFHLNLN 333


>gi|148272995|ref|YP_001222556.1| Holliday junction DNA helicase RuvB [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
 gi|167012668|sp|A5CS06|RUVB_CLAM3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|147830925|emb|CAN01869.1| Holliday junction DNA helicase subunit [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 359

 Score =  322 bits (826), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 151/321 (47%), Positives = 209/321 (65%), Gaps = 1/321 (0%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
                E A    LRPR+L EF GQV+    L++ + AA  +  + DH+L  GPPGLGKTT
Sbjct: 14  PESDAELAFEGALRPRSLSEFVGQVKVRGQLELLLTAAAMQNRSPDHILLAGPPGLGKTT 73

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           LA +VA E     R TSGP I  AGDLAA+L+ L   ++LF+DEIHR++   EE+LY AM
Sbjct: 74  LAMIVAEESRRPLRLTSGPAIQHAGDLAAVLSALVPGEILFVDEIHRMARSAEEMLYLAM 133

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           ED+++D+MVG+G  A S+ + LS FTL+ ATTR G+L +PL+DRFG    L FYE  +L+
Sbjct: 134 EDYRIDIMVGKGAGATSIPLELSPFTLVGATTRSGMLPSPLRDRFGFTAHLEFYETHELE 193

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            +++R A++  L +  EA  EIA R RGTPRIA RLLRRVRD+A V   +    E   AA
Sbjct: 194 QVIERAARMLHLEIEHEAVAEIAGRCRGTPRIANRLLRRVRDYALVHGTEAG-LESVRAA 252

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           L    +D +G D+LD   +  I   FGGGPVG+ T++  + E  + IE ++EP++++ G 
Sbjct: 253 LDLYDVDPLGLDRLDRAVMRGILTRFGGGPVGLNTLAVSVGEEAETIESVVEPFLVRIGL 312

Query: 310 IQRTPRGRLLMPIAWQHLGID 330
           + RTPRGR+  P AW+H G++
Sbjct: 313 VTRTPRGRVATPAAWEHFGLE 333


>gi|88608213|ref|YP_506456.1| Holliday junction DNA helicase B [Neorickettsia sennetsu str.
           Miyayama]
 gi|123736351|sp|Q2GDJ0|RUVB_NEOSM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|88600382|gb|ABD45850.1| holliday junction DNA helicase RuvB [Neorickettsia sennetsu str.
           Miyayama]
          Length = 331

 Score =  322 bits (826), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 171/315 (54%), Positives = 240/315 (76%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
            +E      LRP+++E+F GQ     NL+VFI++A+ R ++LDHVLF GPPGLGKTTLA 
Sbjct: 8   QEETFQDLSLRPKSIEKFVGQQRVVENLQVFIDSAQKRNDSLDHVLFCGPPGLGKTTLAH 67

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           +++ EL     +T+GP+++KAGD+AA+LTNL   D+LFIDEIHRL   VEE+LYPAMED+
Sbjct: 68  IISNELESRIHTTAGPLLSKAGDIAAILTNLHKNDILFIDEIHRLPSAVEEVLYPAMEDY 127

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            LDL+VG+GP+A+S++INL++FTL+AATTR+G+L+NPL+DRFGI +RL+FY + +L  ++
Sbjct: 128 HLDLIVGDGPAAKSIRINLAKFTLVAATTRIGMLSNPLRDRFGITLRLDFYTVSELLQLL 187

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           Q+ A+   + + + A  E+A RSRGTPRIA RLL+RVRDF EV+ +  ITRE AD AL +
Sbjct: 188 QQAAERLSVNIENGAMIELAKRSRGTPRIALRLLKRVRDFLEVSDSDVITREFADLALNK 247

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           + +D+ G D+LD  Y+  IA+N+   PVGI+TI+A +SE  D+IE+LIEPY+I+ GF+ R
Sbjct: 248 MEVDQFGLDKLDYTYMDFIAKNYSDNPVGIKTIAAAISEKEDSIEELIEPYLIKIGFLSR 307

Query: 313 TPRGRLLMPIAWQHL 327
           T RGR L   A  +L
Sbjct: 308 TQRGRRLTGKALDYL 322


>gi|207108173|ref|ZP_03242335.1| Holliday junction DNA helicase B [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 320

 Score =  322 bits (826), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 157/317 (49%), Positives = 226/317 (71%), Gaps = 1/317 (0%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E +    LRP   E+F GQ +  SNL++ I AAK R E+LDH+LF GPPGLGKT+++ ++
Sbjct: 4   ETSQEVSLRPNLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHII 63

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A+E+  N + T+ P+I K+GDLAA+LTNL+ +D+LFIDEIHRLS  +EE+LYPAMEDF+L
Sbjct: 64  AKEMETNIKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRL 123

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D+++G GP+A+++KI+L  FTLI ATTR G+L+NPL+DRFG+  R+ FY   +L  I+++
Sbjct: 124 DIIIGSGPAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQFYSPSELALIIKK 183

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A      + +E+A EIA RSRGTPRIA RLL+RVRDFA V ++  +   I   AL  L 
Sbjct: 184 AAIKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMDLNITLHALNELG 243

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           ++++GFD+ DL YL+++A    G PVG+ TI+A + E    IED+IEP+++  G+++RT 
Sbjct: 244 VNELGFDEADLAYLSLLANA-QGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTA 302

Query: 315 RGRLLMPIAWQHLGIDI 331
           +GR+  P     L I  
Sbjct: 303 KGRIATPKTHALLKIPT 319


>gi|57168275|ref|ZP_00367414.1| Holliday junction DNA helicase RuvB [Campylobacter coli RM2228]
 gi|57020649|gb|EAL57318.1| Holliday junction DNA helicase RuvB [Campylobacter coli RM2228]
          Length = 336

 Score =  322 bits (825), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 167/330 (50%), Positives = 236/330 (71%), Gaps = 2/330 (0%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MDR   + +  S ++   + LRP   + + GQ     NL VFI AAK R E LDH+LF G
Sbjct: 1   MDRIVEIEK-YSFDETYETSLRPSNFDGYIGQENIKKNLNVFISAAKKRNECLDHILFSG 59

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           P GLGKTTLA +++ E+G N ++T+ P+I K+GDLAA+LTNL + DVLFIDEIHRLS  +
Sbjct: 60  PAGLGKTTLANIISYEMGANIKTTAAPMIEKSGDLAAILTNLSEGDVLFIDEIHRLSPAI 119

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMED++LD+++G GP+A+++KI+L +FTLI ATTR G+L+NPL+DRFG+  RL 
Sbjct: 120 EEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLE 179

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY+ E+L  I+Q+ A     +  +EAA EIA RSR TPRIA RLL+RVRDFA+V   +TI
Sbjct: 180 FYKDEELAIILQKAALKLNKSCENEAALEIAKRSRSTPRIALRLLKRVRDFADVNDEETI 239

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T+E A  AL  L ++++GFD +DLRYL ++       P+G+ +I+A LSE  + IED+IE
Sbjct: 240 TKERAKEALNSLGVNELGFDAMDLRYLELLTEA-KRKPIGLSSIAAALSEDENTIEDVIE 298

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           PY++  G+I+RT +GR+    ++  L ++ 
Sbjct: 299 PYLLANGYIERTAKGRIASTKSFSVLKLNY 328


>gi|239917789|ref|YP_002957347.1| Holliday junction DNA helicase subunit RuvB [Micrococcus luteus
           NCTC 2665]
 gi|281413718|ref|ZP_06245460.1| Holliday junction DNA helicase RuvB [Micrococcus luteus NCTC 2665]
 gi|239838996|gb|ACS30793.1| Holliday junction DNA helicase subunit RuvB [Micrococcus luteus
           NCTC 2665]
          Length = 340

 Score =  322 bits (825), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 153/321 (47%), Positives = 212/321 (66%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
            +E      LRP+ L+EF GQ+     L + + +A+ R  A DHVL  GPPGLGKTTLA 
Sbjct: 15  PEERRLEVALRPKHLDEFVGQMRVREQLDLMLASARLRDRAADHVLLSGPPGLGKTTLAM 74

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           +VA E+    R +SGP I  AGDLAA+L++L + +VLF+DEIHR+S   EE+LY AMEDF
Sbjct: 75  IVAAEMNAPLRLSSGPAIQHAGDLAAILSSLTEGEVLFLDEIHRMSRPAEEMLYMAMEDF 134

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           ++D++VG+G  A S+ + L  FTL+ ATTR GLL  PL+DRFG    L+FY  E+L+ ++
Sbjct: 135 RVDIVVGKGAGATSIPLELPPFTLVGATTRAGLLPGPLRDRFGFTGHLDFYTEEELERVL 194

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           +R A L  + +  E   +IA RSRGTPRIA RLLRRVRD+A V     +    A AAL  
Sbjct: 195 RRSALLLDMRLATEGYRQIARRSRGTPRIANRLLRRVRDWALVKGLAEVGAHDAAAALDM 254

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
             +D  G D+LD   LT +   FGGGPVG+ T++  + E  + +E + EP++I++G + R
Sbjct: 255 YDVDGRGLDRLDRSVLTALCTTFGGGPVGLSTLATAVGEESETVETVAEPFLIREGMVAR 314

Query: 313 TPRGRLLMPIAWQHLGIDIPH 333
           TPRGR+ +P AW+HLG+ +P 
Sbjct: 315 TPRGRVALPGAWEHLGLAVPE 335


>gi|72383030|ref|YP_292385.1| Holliday junction DNA helicase RuvB [Prochlorococcus marinus str.
           NATL2A]
 gi|97190202|sp|Q46IJ6|RUVB_PROMT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|72002880|gb|AAZ58682.1| Holliday junction DNA helicase subunit RuvB [Prochlorococcus
           marinus str. NATL2A]
          Length = 356

 Score =  322 bits (825), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 153/334 (45%), Positives = 230/334 (68%), Gaps = 4/334 (1%)

Query: 4   REGLLSRNVSQEDADIS---LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
            E L+  ++ +E+  +S    LRP++ ++F GQ E    L++ ++A+  R EALDH++  
Sbjct: 19  EERLVGPSLLKEELKLSQQDSLRPKSFDDFVGQSELKKVLEISVKASLKRGEALDHLMLY 78

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTT+A V+A ELGV  R TS P + +  D+  LL N++ R+++F+DEIHRL+ I
Sbjct: 79  GPPGLGKTTMALVIAEELGVKARVTSAPALERPRDIVGLLINIQPRELIFVDEIHRLNRI 138

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            +E+LYPAMED +LDL VG+G S+R   I +  FTL+ ATT+   L++P++DRFGI  RL
Sbjct: 139 SQELLYPAMEDRRLDLTVGKGTSSRMRSIEIPPFTLVGATTKPAALSSPMRDRFGITQRL 198

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV-AHAK 239
           +FY   DL+ I++R AKL  L +++EA+ ++A R RGTPRIA RL+RRVRD+AEV +H+K
Sbjct: 199 DFYNYLDLENIIKRSAKLINLVISEEASQQLAKRCRGTPRIANRLIRRVRDYAEVYSHSK 258

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  E+ + AL    +D+ G D  D  Y+ ++   + GGPVG+ET++AGL E    +E +
Sbjct: 259 KIDVEVVNDALDLHRVDQRGLDATDRSYIGLLVNQYQGGPVGLETLAAGLGEDSTTLETV 318

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +EPY++Q GF+ RT RGR++ P A +H  +  P+
Sbjct: 319 VEPYLMQIGFLHRTSRGRVVTPAAKKHYLLTSPN 352


>gi|57242121|ref|ZP_00370061.1| Holliday junction DNA helicase RuvB [Campylobacter upsaliensis
           RM3195]
 gi|57017313|gb|EAL54094.1| Holliday junction DNA helicase RuvB [Campylobacter upsaliensis
           RM3195]
          Length = 335

 Score =  322 bits (825), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 163/330 (49%), Positives = 234/330 (70%), Gaps = 2/330 (0%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MDR   + +  S ++   S LRP   + + GQ     NL +FI AAK R E LDH+LF G
Sbjct: 1   MDRIVEIEK-FSPDETYESSLRPSNFDGYIGQDNIKKNLHIFINAAKKRGECLDHILFSG 59

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           P GLGKTTLA ++A E+  N ++T+ P+I K+GDLAA+LTNL + DVLFIDEIHRLS  +
Sbjct: 60  PAGLGKTTLANIIATEMRANIKTTAAPMIEKSGDLAAILTNLSEGDVLFIDEIHRLSPAI 119

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMEDF+LD+++G GP+A+++KI+L +FTLI ATTR G+L+NPL+DRFG+  RL 
Sbjct: 120 EEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLE 179

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY+ E+L  I+Q+ A        ++AA EIA RSR TPRIA RLL+RVRDFA+V   + I
Sbjct: 180 FYKNEELALILQKAALKLNKNCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEENI 239

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           + + A  AL  L ++++GFD +DLRYL ++  +  G  +G+ +I+A LSE  + +ED+IE
Sbjct: 240 SLQRAYEALNSLGVNELGFDSMDLRYLELL-TSAKGKAMGLASIAAALSEDENTVEDVIE 298

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           PY++  G+I+RT +GR+    +++ L ++ 
Sbjct: 299 PYLLANGYIERTAKGRIASIKSYRTLKLNY 328


>gi|145220213|ref|YP_001130922.1| Holliday junction DNA helicase B [Prosthecochloris vibrioformis DSM
           265]
 gi|189046041|sp|A4SG11|RUVB_PROVI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|145206377|gb|ABP37420.1| Holliday junction DNA helicase RuvB [Chlorobium phaeovibrioides DSM
           265]
          Length = 346

 Score =  322 bits (824), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 166/322 (51%), Positives = 220/322 (68%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M  E L +   + E      +RP  +E+FTGQ     NLKVFI AA+ R EALDHVL  G
Sbjct: 1   MKIELLTTPADAAEVRIEEQIRPARMEDFTGQQRLTDNLKVFISAARMREEALDHVLLSG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+G + R+TSGP++ KAG+LA LLT L+  DVLFIDEIHR+   V
Sbjct: 61  PPGLGKTTLAHIIAAEMGSSIRATSGPLLDKAGNLAGLLTGLKRGDVLFIDEIHRMPPAV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE LY AMEDF++D+M+  GPSAR+V++ +  FTL+ ATTR GLLT+PL+ RFGI  R +
Sbjct: 121 EEYLYSAMEDFRIDIMIDSGPSARAVQLKIEPFTLVGATTRSGLLTSPLRARFGINSRFD 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y  + L+ IV R + +  + +  +AA EIA RSRGTPRIA RLLRR RDFA+V  A  I
Sbjct: 181 YYSPDLLEGIVMRASGILSIGIDQDAASEIAGRSRGTPRIANRLLRRARDFAQVEKAAVI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           +R IA   L  L ID+ G D +D + +  I   F GGPVG+ +++  + E +D IE++ E
Sbjct: 241 SRRIAMKTLECLDIDEEGLDDMDKKIMDTIVNRFSGGPVGVASLAVSVGEEQDTIEEVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIA 323
           PY+IQ G++ RTPRGR+    A
Sbjct: 301 PYLIQAGYLSRTPRGRVATRQA 322


>gi|256825357|ref|YP_003149317.1| Holliday junction DNA helicase subunit RuvB [Kytococcus sedentarius
           DSM 20547]
 gi|256688750|gb|ACV06552.1| Holliday junction DNA helicase subunit RuvB [Kytococcus sedentarius
           DSM 20547]
          Length = 357

 Score =  322 bits (824), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 155/328 (47%), Positives = 209/328 (63%), Gaps = 1/328 (0%)

Query: 6   GLLSRNVSQEDA-DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
            ++     Q+DA   + LRP+ L +  GQ      L + +EAA+ R    DH+L  GPPG
Sbjct: 16  RIVDPAAGQDDAGFDAALRPKRLADLAGQDRVRDQLHLVLEAARRRGAPADHILLSGPPG 75

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLA +VA E+    R TSGP I  AGDLAA+L++L + +VLF+DEIHR+S   EE+
Sbjct: 76  LGKTTLAMIVAGEMAAPIRITSGPAIQHAGDLAAILSSLAEGEVLFLDEIHRMSRAAEEM 135

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LY AMEDF++D++VG+GP A ++ + L  FT++ ATTR GLL  PL+DRFG    L++Y 
Sbjct: 136 LYLAMEDFRVDVIVGKGPGATAIPLELPPFTVVGATTRSGLLPAPLRDRFGFTGHLDYYT 195

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            EDL TI+   A   G+    E   EIA RSRGTPRIA RLLRRVRD+A+V     ++ E
Sbjct: 196 AEDLATILAGNAVKLGIESEPEGISEIAGRSRGTPRIANRLLRRVRDWAQVHGQHVVSAE 255

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
            A  AL    +D +G D+LD   L  +   F GGPVG+ T++  + E  D +E + EPY+
Sbjct: 256 AAREALALFDVDLLGLDRLDRAVLEALCHRFDGGPVGLTTLAVAVGEEADTVETVAEPYL 315

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           +++GFI RTPRGR     AW+HLG   P
Sbjct: 316 VREGFIVRTPRGRAATTAAWEHLGTRPP 343


>gi|148243842|ref|YP_001220081.1| Holliday junction DNA helicase B [Acidiphilium cryptum JF-5]
 gi|146400405|gb|ABQ28939.1| Holliday junction DNA helicase subunit RuvB [Acidiphilium cryptum
           JF-5]
          Length = 312

 Score =  322 bits (824), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 171/306 (55%), Positives = 213/306 (69%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
             LRP+ L +F GQ +   NL  FI AA  R  +LDHVL  GPPGLGKTT+AQ++A E+ 
Sbjct: 3   PALRPQGLADFVGQADTMRNLATFIRAALIRGVSLDHVLLNGPPGLGKTTIAQIIAHEMN 62

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
            N ++  GP + +A DLAA+LT ++  +VLFIDEIHR+     EILY AMEDF LD+++G
Sbjct: 63  CNLKTIIGPAVQRAADLAAVLTTMQPNEVLFIDEIHRVQPAAAEILYGAMEDFTLDILIG 122

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199
           EGP ARSV+I+L RFTLI ATTR G L  PL+DRFGI + L FY  EDL  IV R A + 
Sbjct: 123 EGPQARSVRIDLPRFTLIGATTRSGSLPAPLRDRFGIHLGLEFYSPEDLVRIVTRSAGML 182

Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259
           G+ +  E A EIA RSRGTPRIA RLLRRV DFA VA    IT  IAD AL  LA+D+ G
Sbjct: 183 GIGMMPEGAMEIARRSRGTPRIANRLLRRVHDFAVVAGVVAITDTIADMALSSLAVDRRG 242

Query: 260 FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLL 319
            D+LD RY+  I    GGGPVGI+T++ GL E R+ IED+IEP+++  G I RT RGR+L
Sbjct: 243 LDKLDRRYIDWIDTVHGGGPVGIDTLATGLGEARETIEDVIEPFLVASGIITRTSRGRVL 302

Query: 320 MPIAWQ 325
            P A++
Sbjct: 303 TPKAYE 308


>gi|317968453|ref|ZP_07969843.1| Holliday junction DNA helicase RuvB [Synechococcus sp. CB0205]
          Length = 329

 Score =  321 bits (823), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 164/324 (50%), Positives = 221/324 (68%), Gaps = 3/324 (0%)

Query: 7   LLSRNVSQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           ++   VS+++  +     LRP+ L ++ GQ E    L + IEA +AR EALDHVL  GPP
Sbjct: 1   MVDPAVSEQEKPLQREDSLRPKQLADYIGQSELKQVLGIAIEATRARDEALDHVLLYGPP 60

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTT+A V+A ELGV  R TS P + +  D+  LL NL+ R++LFIDEIHRL+ + EE
Sbjct: 61  GLGKTTMAMVLAEELGVRCRITSAPALERPRDIVGLLVNLQPRELLFIDEIHRLTRVAEE 120

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LYPAMEDF+LDL VG+G +AR+  I L+ FTL+ ATTR G L++PL+DRFG+  RL FY
Sbjct: 121 LLYPAMEDFRLDLTVGKGTTARTRTIPLAPFTLVGATTRAGSLSSPLRDRFGLIQRLEFY 180

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            +EDL+ IVQR A L  L + +EAA E+A R RGTPRIA RLLRRVRD A V     ++ 
Sbjct: 181 GLEDLQAIVQRAAGLLALDLAEEAALEVARRCRGTPRIANRLLRRVRDVASVGGHARVSA 240

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           E+   AL    +D  G D  D R L ++   +GGGPVG++T++AGL E    +E ++EP+
Sbjct: 241 ELVQQALSLHRVDGRGLDASDRRLLDLLHNGYGGGPVGLDTLAAGLGEDPVTLESVVEPF 300

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHL 327
           ++QQG +QRTPRGR++      HL
Sbjct: 301 LLQQGLLQRTPRGRVITQAGIDHL 324


>gi|289706227|ref|ZP_06502590.1| Holliday junction DNA helicase RuvB [Micrococcus luteus SK58]
 gi|289557066|gb|EFD50394.1| Holliday junction DNA helicase RuvB [Micrococcus luteus SK58]
          Length = 340

 Score =  321 bits (822), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 155/321 (48%), Positives = 212/321 (66%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
            +E    + LRPR L+EF GQ+     L + + +A+ R  A DHVL  GPPGLGKTTLA 
Sbjct: 15  PEERRLEAALRPRHLDEFVGQMRVREQLDLMLASARLRDRAADHVLLSGPPGLGKTTLAM 74

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           +VA E+    R +SGP I  AGDLAA+L++L + +VLF+DEIHR+S   EE+LY AMEDF
Sbjct: 75  IVAAEMNAPLRLSSGPAIQHAGDLAAILSSLTEGEVLFLDEIHRMSRPAEEMLYMAMEDF 134

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           ++D++VG+G  A S+ + L  FTL+ ATTR GLL  PL+DRFG    L+FY  E+L+ ++
Sbjct: 135 RVDIVVGKGAGATSIPLELPPFTLVGATTRAGLLPGPLRDRFGFTGHLDFYTEEELERVL 194

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           +R A L  + +  E   +IA RSRGTPRIA RLLRRVRD+A V     +    A AAL  
Sbjct: 195 RRSALLLDMRLATEGYRQIARRSRGTPRIANRLLRRVRDWALVKGLAEVGAHDAAAALDM 254

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
             +D  G D+LD   LT +   FGGGPVG+ T++  + E  + +E + EP++I++G + R
Sbjct: 255 YDVDGRGLDRLDRSVLTALCTTFGGGPVGLSTLATAVGEEAETVETVAEPFLIREGMVAR 314

Query: 313 TPRGRLLMPIAWQHLGIDIPH 333
           TPRGR+ +P AW+HLGI  P 
Sbjct: 315 TPRGRVALPGAWEHLGIAAPE 335


>gi|305431583|ref|ZP_07400757.1| crossover junction ATP-dependent DNA helicase RuvB [Campylobacter
           coli JV20]
 gi|304445390|gb|EFM38029.1| crossover junction ATP-dependent DNA helicase RuvB [Campylobacter
           coli JV20]
          Length = 336

 Score =  321 bits (822), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 166/330 (50%), Positives = 236/330 (71%), Gaps = 2/330 (0%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MDR   + +  S ++   + LRP   + + GQ     NL VFI AAK R E LDH+LF G
Sbjct: 1   MDRIVEIEK-YSFDETYETSLRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSG 59

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           P GLGKTTLA +++ E+G N ++T+ P+I K+GDLAA+LTNL + D+LFIDEIHRLS  +
Sbjct: 60  PAGLGKTTLANIISYEMGANIKTTAAPMIEKSGDLAAILTNLSEGDILFIDEIHRLSPAI 119

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMED++LD+++G GP+A+++KI+L +FTLI ATTR G+L+NPL+DRFG+  RL 
Sbjct: 120 EEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLE 179

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY+ E+L  I+Q+ A     +  +EAA EIA RSR TPRIA RLL+RVRDFA+V   +TI
Sbjct: 180 FYKDEELAIILQKAALKLNKSCENEAALEIAKRSRSTPRIALRLLKRVRDFADVNDEETI 239

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T+E A  AL  L ++++GFD +DLRYL ++       P+G+ +I+A LSE  + IED+IE
Sbjct: 240 TKERAKEALNSLGVNELGFDAMDLRYLELLTEA-KRKPIGLSSIAAALSEDENTIEDVIE 298

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           PY++  G+I+RT +GR+    ++  L ++ 
Sbjct: 299 PYLLANGYIERTAKGRIASTKSFSVLKLNY 328


>gi|78189723|ref|YP_380061.1| Holliday junction DNA helicase RuvB [Chlorobium chlorochromatii
           CaD3]
 gi|97189984|sp|Q3APQ7|RUVB_CHLCH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|78171922|gb|ABB29018.1| Holliday junction DNA helicase RuvB [Chlorobium chlorochromatii
           CaD3]
          Length = 352

 Score =  320 bits (821), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 167/326 (51%), Positives = 222/326 (68%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M  E L +   + E      +RP  +E+F GQ     NLKVFI AAK R +ALDHVL  G
Sbjct: 1   MRIELLNTPPDAAESRFEEQIRPIRMEDFAGQQRLTDNLKVFISAAKMRGDALDHVLLSG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+G + ++TSGP++ KAG+LA LLT L+  D+LFIDEIHR+  +V
Sbjct: 61  PPGLGKTTLAYIIASEMGSSIKATSGPLLDKAGNLAGLLTGLQKGDILFIDEIHRMPPMV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE LY AMEDF++D+M+  GPSAR+V++ +  FTL+ ATTR GLLT+PL+ RFGI  R +
Sbjct: 121 EEYLYSAMEDFRIDIMLDSGPSARAVQLRIEPFTLVGATTRSGLLTSPLRARFGINSRFD 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +YE E L  I+ R + + G+ +  +AA EIA RSRGTPRIA RLLRR RDFA+V    TI
Sbjct: 181 YYEPELLTRIIIRASSILGIGIEPDAAAEIAGRSRGTPRIANRLLRRARDFAQVDGISTI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           TR IA   L  L ID+ G D++D + +  I   F GGPVGI +++  + E RD IE++ E
Sbjct: 241 TRTIAMKTLECLEIDEEGLDEMDKKIMDTIVNKFSGGPVGIASLAVSVGEERDTIEEVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHL 327
           PY+IQ G++ RT RGR+    A+   
Sbjct: 301 PYLIQAGYLARTTRGRVATRKAFSRF 326


>gi|89898409|ref|YP_515519.1| Holliday junction DNA helicase RuvB [Chlamydophila felis Fe/C-56]
 gi|123735909|sp|Q254B4|RUVB_CHLFF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|89331781|dbj|BAE81374.1| holliday junction DNA helicase [Chlamydophila felis Fe/C-56]
          Length = 337

 Score =  320 bits (821), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 142/316 (44%), Positives = 206/316 (65%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           + Q+      LRP+ L EF GQ +    L++F+ AA  R E   H LF GPPGLGKT+LA
Sbjct: 8   LHQDKKFDIALRPKGLREFCGQAQLTERLELFLSAALQRGEVPGHCLFFGPPGLGKTSLA 67

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            +VAR +G      SGP + K  DL  LLT+L++ DV FIDEIHR+  + EE LY AMED
Sbjct: 68  HIVARTVGKGLVVASGPQLVKPSDLLGLLTSLQEGDVFFIDEIHRMGKVAEEYLYSAMED 127

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           +++D+ +  GP ARS+ ++L+ F+L+ ATTR G+L+ PL+ RF    R+++Y  EDL TI
Sbjct: 128 YKIDITIDSGPGARSISVDLAPFSLVGATTRSGMLSEPLRARFSFSGRVSYYSDEDLATI 187

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           ++R + L G+     A  EIA RSRGTPR+A  LLR VRDFA++     I  ++A+ AL 
Sbjct: 188 LKRSSNLLGIDADAAALYEIARRSRGTPRLANNLLRWVRDFAQMREGNRINSDVAEKALS 247

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L ID  G +++D++ LT I   + GGPVGI+T+S  + E    +ED+ EP++I +G ++
Sbjct: 248 MLLIDDWGLNEIDIKLLTTIIDYYQGGPVGIKTLSVAVGEDIKTLEDVYEPFLILKGLLK 307

Query: 312 RTPRGRLLMPIAWQHL 327
           +T RGR++  +A+ HL
Sbjct: 308 KTSRGRMVTQLAYNHL 323


>gi|254796930|ref|YP_003081767.1| holliday junction DNA helicase RuvB [Neorickettsia risticii str.
           Illinois]
 gi|254590179|gb|ACT69541.1| holliday junction DNA helicase RuvB [Neorickettsia risticii str.
           Illinois]
          Length = 331

 Score =  320 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 169/324 (52%), Positives = 242/324 (74%), Gaps = 3/324 (0%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           R+ +  +  + +D     LRP+++++F GQ     NL+VFI++A+ R ++LDHVLF GPP
Sbjct: 2   RDSIFEQEETFQDL---SLRPKSIKKFVGQKRVIENLQVFIDSAQKRNDSLDHVLFCGPP 58

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA +++ EL     +T+GP+++KAGD+AA+LTNL   D+LFIDEIHRL   VEE
Sbjct: 59  GLGKTTLAHIISNELESRIHTTAGPLLSKAGDIAAILTNLHKNDILFIDEIHRLPSAVEE 118

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LYPAMED+ LDL+VG+GP+A+S++INL++FTL+AATTRVG+L+NPL+DRFGI +RL+FY
Sbjct: 119 VLYPAMEDYHLDLIVGDGPAAKSIRINLAKFTLVAATTRVGMLSNPLRDRFGITLRLDFY 178

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            + +L  ++Q+ A+   + + + A  E+A RSRGTPRIA RLL+R+RDF EV+    IT 
Sbjct: 179 TVNELLQLLQQAAERLSVNIENGAMIELAKRSRGTPRIALRLLKRMRDFLEVSDFDVITP 238

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           E AD AL ++ +D+ G D+LD  Y+  IA N+   PVG++TI+A +SE  D+IE+LIEPY
Sbjct: 239 EFADLALNKMEVDQFGLDKLDYTYMHFIAENYSDNPVGVKTIAAAISEKEDSIEELIEPY 298

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHL 327
           +I+ GF+ RT RGR L   A  +L
Sbjct: 299 LIKIGFLNRTQRGRRLTRKALDYL 322


>gi|109947700|ref|YP_664928.1| Holliday junction DNA helicase RuvB [Helicobacter acinonychis str.
           Sheeba]
 gi|122973263|sp|Q17WP7|RUVB_HELAH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|109714921|emb|CAJ99929.1| holliday junction DNA helicase [Helicobacter acinonychis str.
           Sheeba]
          Length = 336

 Score =  320 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 157/329 (47%), Positives = 231/329 (70%), Gaps = 2/329 (0%)

Query: 4   REGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           +E +++      E +    LRP   E + GQ +  +NL++ I AAK R E+LDH+LF GP
Sbjct: 2   KERIVNLETLDFETSQEVSLRPDLWENYIGQEKIKNNLQISICAAKKRQESLDHMLFFGP 61

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKT+++ ++A+E+  N + T+ P+I K+GDLAA+LTNL+ +D+LFIDEIHRLS  +E
Sbjct: 62  PGLGKTSISHIIAKEMETNIKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIE 121

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMEDF+LD+++G GP+A+++KI+L  FTLI ATTRVG+L+NPL+DRFG+  R+ F
Sbjct: 122 EVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATTRVGMLSNPLRDRFGMSFRMQF 181

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y   +L  I+++ A      + +E+A EIA RSRGTPRIA RLL+RVRDFA V ++  + 
Sbjct: 182 YSPSELALIIKKAATKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMD 241

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             I   AL  L ++++GFD+ DL YL+++A    G PVG+ TI+A + E    IED+IEP
Sbjct: 242 LNITLHALNELGVNELGFDEADLAYLSLLANA-QGKPVGLNTIAASMREDESTIEDVIEP 300

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           +++  G+++RT +GR+  P     L I  
Sbjct: 301 FLLANGYLERTAKGRIATPKTHALLKIPT 329


>gi|294055485|ref|YP_003549143.1| Holliday junction DNA helicase RuvB [Coraliomargarita akajimensis
           DSM 45221]
 gi|293614818|gb|ADE54973.1| Holliday junction DNA helicase RuvB [Coraliomargarita akajimensis
           DSM 45221]
          Length = 344

 Score =  320 bits (820), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 150/328 (45%), Positives = 219/328 (66%), Gaps = 4/328 (1%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
            + L + +  QE    S+LRP +  +F GQ +    LKV + AA+ R E L+H+L  GPP
Sbjct: 13  EDSLQNPDRQQE----SILRPLSFSDFAGQAKTLERLKVMVGAARDRGEPLNHILLSGPP 68

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTL+ ++  E+G N   TSGPVI K  DLA LLTNL + D+LFIDEIHR+   VEE
Sbjct: 69  GLGKTTLSLILGNEMGKNVSITSGPVIDKPADLAGLLTNLSEGDILFIDEIHRIPKTVEE 128

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
            LY AMEDF++D+M+ +GP+ARSV++NL RFTL+ ATTR+GLLT PL+ RF +  RL++Y
Sbjct: 129 YLYSAMEDFRIDIMIDQGPNARSVRLNLPRFTLLGATTRLGLLTAPLRSRFTLQTRLSYY 188

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           +   L+ I++R   +  +    + A EIA R+RGTPRIA  L+   RD+A+   +  IT+
Sbjct: 189 DHATLQGIIERTCDILNVEFEHDGAAEIARRARGTPRIANNLVNFCRDYAQQRGSGIITQ 248

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
             A AAL  L ID  G D++D + + ++A ++ GGPVG+ T++  + E    +E++ EPY
Sbjct: 249 ASAAAALELLEIDTRGLDEMDKQVMRVMAESYKGGPVGLGTVAIAVGEEAHTLEEVHEPY 308

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           +IQ+G++QRT +GR+L    W  +G++ 
Sbjct: 309 LIQEGYLQRTAQGRVLTEKGWHVIGLEP 336


>gi|159904281|ref|YP_001551625.1| Holliday junction DNA helicase RuvB [Prochlorococcus marinus str.
           MIT 9211]
 gi|159889457|gb|ABX09671.1| Holliday junction DNA helicase RuvB [Prochlorococcus marinus str.
           MIT 9211]
          Length = 348

 Score =  320 bits (820), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 158/326 (48%), Positives = 223/326 (68%), Gaps = 5/326 (1%)

Query: 6   GLLSRNVSQED---ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
            L+     +ED        LRP+TL EF GQ E    L + ++AA  R EALDHVL  GP
Sbjct: 21  RLVDPKFLKEDCKPIKEDSLRPKTLNEFVGQSELKEVLAISVKAALYRKEALDHVLLYGP 80

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTT+A V+A+ELGV  R TS P + +  D+  LL +L  +++LF+DEIHRL+   E
Sbjct: 81  PGLGKTTMALVLAQELGVKCRITSAPALERPRDIVGLLMDLRSKELLFVDEIHRLTNSAE 140

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPA+EDF+LDL +G+G ++++  I L RFTL+ ATTR   +++PL+DRFGI  R  F
Sbjct: 141 ELLYPALEDFRLDLTIGKGTTSKTRAIELPRFTLVGATTRPAAISSPLRDRFGITQRFGF 200

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA-HAKTI 241
           Y ++DL+ IV+R A+   L++ D+A+ EIA R RGTPRIA RLLRRVRDFA V  + K I
Sbjct: 201 YNLKDLQEIVKRSARFLELSMIDDASLEIARRCRGTPRIANRLLRRVRDFATVKCNKKLI 260

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
             ++ D +L    +D+ G DQ D R L+++A + GGGPVG++T++A L E    +E ++E
Sbjct: 261 DIDLVDESLKLHCVDERGLDQFDRRLLSLLA-SHGGGPVGLDTLAAALGEEPATLESVVE 319

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHL 327
           P+++Q GF+QRTPRGR+L     +H+
Sbjct: 320 PFLLQIGFLQRTPRGRILTLQGQEHI 345


>gi|116620085|ref|YP_822241.1| Holliday junction DNA helicase RuvB [Candidatus Solibacter usitatus
           Ellin6076]
 gi|122255536|sp|Q02AG6|RUVB_SOLUE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|116223247|gb|ABJ81956.1| Holliday junction DNA helicase subunit RuvB [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 344

 Score =  320 bits (820), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 167/330 (50%), Positives = 227/330 (68%), Gaps = 2/330 (0%)

Query: 1   MMDREGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M DRE L+S +   EDA   + LRPR L +FTGQ +   NL + IEAA+ R EA+DHVL 
Sbjct: 1   MPDRE-LISGDRQAEDAQFEVGLRPRRLADFTGQSKLKENLSIAIEAARMRGEAMDHVLL 59

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA ++A EL V F  TSGPV+ K  DL  +L+N+    V FIDEIHRL  
Sbjct: 60  YGPPGLGKTTLASIIAEELQVQFTPTSGPVLQKKLDLTGILSNIRLHQVFFIDEIHRLLP 119

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            VEE+LY A+EDF++D++VG GP AR+  + + +FT I ATTR GL++ PL+ RFG+ +R
Sbjct: 120 DVEEMLYSALEDFRVDILVGVGPGARTHSLPMPKFTAIGATTRQGLVSAPLRGRFGLVLR 179

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L+ Y  E+LK IV+R A+L  + + D AA EIA R RGTPRIA RLLRRVRD+A+V    
Sbjct: 180 LDPYNTEELKAIVKRSARLLTVEIEDGAAEEIARRCRGTPRIANRLLRRVRDYAQVRADG 239

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I +++A  AL  L +D+ G D++D + +  I   + GGPVG+ TI+A +SE  + IE++
Sbjct: 240 RINQKVAQTALNLLDVDRYGLDEIDQKIMMTILEKYRGGPVGVNTIAASISEESETIEEV 299

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
            EPY+IQ GF+ RTPRGR+   +A+ +  +
Sbjct: 300 YEPYLIQLGFLNRTPRGRVATELAYDYFKV 329


>gi|158522216|ref|YP_001530086.1| Holliday junction DNA helicase B [Desulfococcus oleovorans Hxd3]
 gi|259495663|sp|A8ZUH7|RUVB_DESOH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|158511042|gb|ABW68009.1| Holliday junction DNA helicase RuvB [Desulfococcus oleovorans Hxd3]
          Length = 343

 Score =  320 bits (820), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 157/330 (47%), Positives = 212/330 (64%), Gaps = 2/330 (0%)

Query: 3   DREGLLSRNVSQEDA--DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           D    ++R+ ++ED   D+  LRP   E++ GQ      L++ I AAK R+E L+HVLF 
Sbjct: 11  DPSSPVTRHETEEDTGDDLFSLRPCDFEDYVGQDRTVETLRIAIAAAKQRSEPLEHVLFH 70

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA ++A E+G +   TSGP + K GDL  +LT+L+  D+LF+DEIHRL   
Sbjct: 71  GPPGLGKTTLAHIIAAEMGTSLTITSGPALEKGGDLIGMLTHLKRGDILFVDEIHRLPRT 130

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            EE LYPAMEDF +D +  +G  AR  +  L++F L+ ATTRVGLL+ PL+DRFGI  + 
Sbjct: 131 TEEFLYPAMEDFAVDFVFDKGIHARCHRYRLNQFVLVGATTRVGLLSAPLRDRFGIFRKF 190

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           +FY  +DL  IV R A L GL + +    E+A RSRGTPRI  RLL+RVRD+ +V H   
Sbjct: 191 DFYSRQDLARIVSRSAALMGLTIDETCTMELARRSRGTPRIVNRLLKRVRDYVQVRHGGV 250

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           IT    D AL    +D+ G   LD  YL  I + +GGGPVGIE I A L E  D + D++
Sbjct: 251 ITVSAIDDALALEGVDEKGLTGLDRSYLETIIQYYGGGPVGIEAIGATLQEETDTLVDVV 310

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           EP+++ +G +QRT  GR     A++HLG+ 
Sbjct: 311 EPFLLAEGLLQRTSSGRKATEAAYRHLGVQ 340


>gi|229820485|ref|YP_002882011.1| Holliday junction DNA helicase RuvB [Beutenbergia cavernae DSM
           12333]
 gi|229566398|gb|ACQ80249.1| Holliday junction DNA helicase RuvB [Beutenbergia cavernae DSM
           12333]
          Length = 345

 Score =  320 bits (820), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 158/331 (47%), Positives = 216/331 (65%), Gaps = 1/331 (0%)

Query: 3   DREGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           D   L S    + E A  + LRPR L EF GQ      L + +EAA AR    DHVL  G
Sbjct: 7   DLAQLTSAEADEIERAAEAALRPRRLAEFVGQRVVRDQLSLVLEAALARRRPPDHVLLAG 66

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
            PGLGKTTLA +VA E+G   R TSGP I  AGDLAA+L+++++ DVLFIDEIHRL+   
Sbjct: 67  GPGLGKTTLAMIVASEVGAALRLTSGPAIQHAGDLAAILSSVQENDVLFIDEIHRLARPA 126

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMEDF++D++VG+G  A ++ + L  FT++ ATTR GLL  PL+DRFG    L+
Sbjct: 127 EEMLYLAMEDFRVDVVVGKGAGATAIPLALPPFTVVGATTRAGLLPAPLRDRFGFTGYLD 186

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FYE+ +L+ +++R A+L    +T  A  EIA RSRGTPRIA RLLRRV+D+A+V  +   
Sbjct: 187 FYEVAELEQVLERSARLLRAELTPAAGAEIASRSRGTPRIANRLLRRVQDWAQVRGSGVA 246

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
             + A AAL    +D+ G D+LD   L  +   F GGPVG+ T++  + E  + +E + E
Sbjct: 247 DVDAARAALEVFEVDERGLDRLDRGVLRALCVRFRGGPVGLGTLAVAVGEEPETVETVAE 306

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           P+++++G I RTPRGR+    AW HLG++ P
Sbjct: 307 PFLVREGLIARTPRGRVATAEAWAHLGLEPP 337


>gi|50954748|ref|YP_062036.1| Holliday junction DNA helicase B [Leifsonia xyli subsp. xyli str.
           CTCB07]
 gi|68715445|sp|Q6AFB4|RUVB_LEIXX RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|50951230|gb|AAT88931.1| holliday junction DNA helicase [Leifsonia xyli subsp. xyli str.
           CTCB07]
          Length = 347

 Score =  320 bits (819), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 150/318 (47%), Positives = 203/318 (63%), Gaps = 1/318 (0%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A    LRPRTL EF GQ +    L++ + AA+ +    DH+L  GPPGLGKTTLA +VA 
Sbjct: 19  AFEGALRPRTLAEFVGQAKVRGQLQLLLTAARMQERTADHILLAGPPGLGKTTLAMIVAH 78

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           E     R +SGP I  AGDLAALL++L   +VLFIDEIHR++   EE+LY AMEDF++D+
Sbjct: 79  ESDRPLRLSSGPAIQHAGDLAALLSSLTPGEVLFIDEIHRMARTAEEMLYLAMEDFRIDI 138

Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA 196
           MVG+G  A S+ ++L+ FTL+ ATTR GLL NPL+DRFG    L FY+  +L  ++ R A
Sbjct: 139 MVGKGAGATSIPLDLAPFTLVGATTRSGLLPNPLRDRFGFTAHLEFYDEGELAQVLARAA 198

Query: 197 KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAID 256
            +    +  EA  EIA R RGTPRIA RLLRRVRD+A V            AAL    ++
Sbjct: 199 VMLEFEIDGEALAEIAGRCRGTPRIANRLLRRVRDYALVHG-GRADIAAVHAALELYDVN 257

Query: 257 KMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRG 316
           ++G D+LD   L  I   F GGPVG+ T++  + E  + IE ++EP++++ G + RTPRG
Sbjct: 258 ELGLDRLDRAVLHAILERFEGGPVGLNTLAVSVGEEPETIESVVEPFLVRIGLLSRTPRG 317

Query: 317 RLLMPIAWQHLGIDIPHR 334
           R+    AW+H G+  P +
Sbjct: 318 RVATVAAWRHFGLAAPRQ 335


>gi|222824270|ref|YP_002575844.1| Holliday junction DNA helicase, ATPase motor protein [Campylobacter
           lari RM2100]
 gi|254767416|sp|B9KDF4|RUVB_CAMLR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|222539491|gb|ACM64592.1| Holliday junction DNA helicase, ATPase motor protein [Campylobacter
           lari RM2100]
          Length = 336

 Score =  320 bits (819), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 160/330 (48%), Positives = 231/330 (70%), Gaps = 2/330 (0%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MDR   + +  S ++   + LRP   + + GQ     NL++FI+AAK R E LDH+LF G
Sbjct: 1   MDRIVEIEK-FSPDETYETSLRPSNFDGYIGQENIKKNLEIFIKAAKKRNECLDHILFSG 59

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           P GLGKTTLA +++ E+  N ++T+ P+I K+GDLAA+LTNL + D+LFIDEIHRLS  +
Sbjct: 60  PAGLGKTTLANIISYEMNANIKTTAAPMIEKSGDLAAILTNLSEGDILFIDEIHRLSPAI 119

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMEDF+LD+++G GP+A+++KI+L +FTLI ATTR G+L+NPL+DRFG+  RL 
Sbjct: 120 EEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLE 179

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY+ E+L  I+++ A          AA EIA RSR TPRIA RLL+RVRDFA+V   + I
Sbjct: 180 FYKNEELAIILEKAALKLNKTCEKNAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEII 239

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           + + A  AL  L ++++GFD +DLRYL ++       P+G+ +I+A LSE  + IED+IE
Sbjct: 240 SEKRAKEALDSLGVNELGFDAMDLRYLELLTEA-KRKPIGLSSIAAALSEDENTIEDVIE 298

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           PY++  G+I+RT +GR+    ++  L +  
Sbjct: 299 PYLLANGYIERTAKGRIASLKSFDVLKLKY 328


>gi|153874903|ref|ZP_02002938.1| Holliday junction ATP-dependent DNA helicase ruvB [Beggiatoa sp.
           PS]
 gi|152068634|gb|EDN67063.1| Holliday junction ATP-dependent DNA helicase ruvB [Beggiatoa sp.
           PS]
          Length = 289

 Score =  320 bits (819), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 166/274 (60%), Positives = 205/274 (74%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           +  GPPGLGKTTL+ +VA E+ VN R TSGPV+ +AGDLAALLTNLE RDVLFIDEIHRL
Sbjct: 1   MIFGPPGLGKTTLSHIVANEMEVNIRQTSGPVLERAGDLAALLTNLEARDVLFIDEIHRL 60

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           S +VEE+LYPAMEDFQLD+M+GEGPSARS+K++L  FTLI ATTR GLLT+PL+DRFGI 
Sbjct: 61  SPVVEEMLYPAMEDFQLDIMIGEGPSARSIKLDLPPFTLIGATTRAGLLTSPLRDRFGIT 120

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            RL FY  EDL  I+ R A +  +++  E A E+A RSRGTPRIA RLLRRVRD+A+V  
Sbjct: 121 QRLEFYSHEDLAKIITRSASILNVSIDTEGAMELACRSRGTPRIANRLLRRVRDYAQVRA 180

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
              IT EIA  AL  L +D  G D +D + L  I   F GGPVG+ET++A + E R  IE
Sbjct: 181 DGQITCEIAKKALDLLNVDTYGLDIMDRKLLLAIMEKFDGGPVGVETLAAIVGEERGTIE 240

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           ++IEP+++QQG + RTPRGR+   +AWQH  +  
Sbjct: 241 EVIEPFLLQQGLLMRTPRGRVATRLAWQHFNLTP 274


>gi|24213510|ref|NP_710991.1| Holliday junction DNA helicase B [Leptospira interrogans serovar
           Lai str. 56601]
 gi|45658642|ref|YP_002728.1| Holliday junction DNA helicase RuvB [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|44888500|sp|Q8F7Y2|RUVB_LEPIN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|47606087|sp|P61534|RUVB_LEPIC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|24194290|gb|AAN48009.1| holliday junction DNA helicase B [Leptospira interrogans serovar
           Lai str. 56601]
 gi|45601886|gb|AAS71365.1| holliday junction DNA helicase protein [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
          Length = 341

 Score =  320 bits (819), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 148/306 (48%), Positives = 207/306 (67%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP  L EF GQ E  +NL V+++AAK R  ALDHVL  GPPGLGKTTLA +++ ELG  
Sbjct: 19  LRPSLLSEFIGQKEVLNNLTVYVQAAKNRKRALDHVLISGPPGLGKTTLAGIISNELGTR 78

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
              TS PVI K  DLA LLT++ + ++LFIDEIH L   +EEILYPAME++ +DL++GEG
Sbjct: 79  LTITSAPVITKGADLARLLTSMGENEILFIDEIHTLPKKLEEILYPAMENYMIDLVIGEG 138

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            +A+ V+I L  FTL+ ATTR GL++ PL+ RFGI +RL++Y  E++K IV R +K+ G+
Sbjct: 139 VTAQMVQIPLKPFTLVGATTRSGLISEPLKSRFGIQLRLDYYNDEEMKQIVLRSSKILGV 198

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + D+AA EI  RSR TPRIA  LL+R+RDF+EV    ++ + +   A  ++ ID +G D
Sbjct: 199 LIEDDAALEIGKRSRKTPRIANHLLKRIRDFSEVEGNLSVKKNLCLKAFEKMGIDDLGLD 258

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   + GGPVG++ I+  + E    IED  E +M++ G I RTP GR+   
Sbjct: 259 GMDRQILDCMIDRYKGGPVGLKAIAVVVGEEEKTIEDTYESFMVRIGLINRTPAGRVATE 318

Query: 322 IAWQHL 327
            A++ L
Sbjct: 319 KAYRQL 324


>gi|116071674|ref|ZP_01468942.1| Holliday junction DNA helicase RuvB [Synechococcus sp. BL107]
 gi|116065297|gb|EAU71055.1| Holliday junction DNA helicase RuvB [Synechococcus sp. BL107]
          Length = 347

 Score =  319 bits (818), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 163/325 (50%), Positives = 210/325 (64%), Gaps = 4/325 (1%)

Query: 7   LLSRNVSQEDA---DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           L+    + E+        LRP+ L E+ GQ E    L + +EAA  R EALDHVL  GPP
Sbjct: 19  LVDPQPAPEEQVIRPDDSLRPKRLAEYIGQSELKQVLGIAVEAALGRGEALDHVLLYGPP 78

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTT+A V+A ELGVN R TS P + +  D+  LL NL+ RD+LFIDEIHRLS + EE
Sbjct: 79  GLGKTTMALVLAEELGVNCRITSAPALERPRDIVGLLVNLQPRDLLFIDEIHRLSRVAEE 138

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LYPAMED +LDL VG+G +AR+  ++L  FTL+ ATTR G L++PL+DRFG+  RL FY
Sbjct: 139 LLYPAMEDRRLDLTVGKGSTARTRTLDLPPFTLVGATTRAGSLSSPLRDRFGLIQRLEFY 198

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA-HAKTIT 242
              DL+ IV R A+L  + +T  A   IA   RGTPRIA RLLRRVRD A V     TI 
Sbjct: 199 GQADLEAIVARTAELVSVDLTCAACARIAASCRGTPRIANRLLRRVRDVASVRQGKGTID 258

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             +   AL    +D+ G D  D R LTM+    GGGPVG+ET++A L E    +E ++EP
Sbjct: 259 DCMVAEALSLHRVDQRGLDASDRRLLTMLVDQHGGGPVGLETLAAALGEDPVTLETVVEP 318

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHL 327
           +++QQG + RTPRGR++   A  HL
Sbjct: 319 FLLQQGLLVRTPRGRMVTDAARSHL 343


>gi|225848850|ref|YP_002729014.1| holliday junction DNA helicase RuvB [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225643095|gb|ACN98145.1| holliday junction DNA helicase RuvB [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 324

 Score =  319 bits (818), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 159/321 (49%), Positives = 226/321 (70%), Gaps = 5/321 (1%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +     +RP+ L++F GQ E    LKVFIEAAK + + LDHV+  GPPGLGKTTLA V+A
Sbjct: 2   EKIELSVRPKFLDDFIGQDEVKRQLKVFIEAAKLKNKPLDHVILSGPPGLGKTTLASVIA 61

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
            E+G N + TS PV+ K GDL  LLT+L+D D+LFIDEIHRLS  +EEILY AMEDF++D
Sbjct: 62  NEMGSNIKITSAPVLEKKGDLIGLLTSLKDNDILFIDEIHRLSPSLEEILYSAMEDFKVD 121

Query: 136 LMVGEGPS-----ARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           +++G G       A++++++L++FTLI ATTRVG+L++PL  RFGI + L+FY+ + L  
Sbjct: 122 VILGGGSGRKGRSAKAIRLDLAKFTLIGATTRVGMLSSPLMSRFGIVLNLDFYDEDSLSK 181

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           I+ R A +  + +T E A EIA  S+GTPRIA +LL RV D+A +   K I +E+A+ AL
Sbjct: 182 IILRTATINNIPITQEGALEIAKHSKGTPRIANKLLSRVYDYAVIHGNKVIDKEVANQAL 241

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
             L+I ++G D L L+YL  +   F GGPVG+ TIS  +SE +  IE++IEPY+++ GFI
Sbjct: 242 RFLSIQELGIDSLSLKYLKTLVIQFNGGPVGLNTISFAISEDKRTIEEVIEPYLLKIGFI 301

Query: 311 QRTPRGRLLMPIAWQHLGIDI 331
           +RT +GR+ +  A++ L +D 
Sbjct: 302 KRTAKGRVALKPAFEFLNLDD 322


>gi|283782242|ref|YP_003372997.1| Holliday junction DNA helicase RuvB [Pirellula staleyi DSM 6068]
 gi|283440695|gb|ADB19137.1| Holliday junction DNA helicase RuvB [Pirellula staleyi DSM 6068]
          Length = 352

 Score =  319 bits (817), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 150/326 (46%), Positives = 211/326 (64%), Gaps = 1/326 (0%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M RE +LS  + + + D   LRP+ + +  GQ E    L++ ++AA+ R++ L H+LF G
Sbjct: 22  MPREAILSAEIPEPEED-RDLRPQRMADMVGQQEVIERLRIVVDAARKRSDTLGHILFDG 80

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTT A  + REL V   ++SGP +    DL   LTNLE   VLFIDEIHR+   V
Sbjct: 81  PPGLGKTTFANCIPRELNVPLVTSSGPALKAPKDLIPYLTNLEPNSVLFIDEIHRMPKPV 140

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE LY AMEDF+LD+++GEG +AR++ + L  FTLI ATTR G+L++PL+DRF +   L 
Sbjct: 141 EEYLYTAMEDFRLDIVLGEGVNARTINLKLKPFTLIGATTRAGMLSSPLRDRFAVREHLG 200

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY +++L  IV+R A      +  +AA EIA RSRGTPRIA   LR VRD+AE   +  I
Sbjct: 201 FYTVDELTEIVRRSAAKLSCNIAGDAAIEIARRSRGTPRIANHRLRWVRDYAEAKSSGQI 260

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T  +A AAL    ID +G D+ D  YL  I R F GGPVG+++++  ++   D + D +E
Sbjct: 261 TVAVAQAALAMSGIDILGLDKQDRAYLETILRVFSGGPVGVDSVAHTMNLATDTLSDEVE 320

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHL 327
           P++++   I R+PRGR+L   A++HL
Sbjct: 321 PFLLRCELIVRSPRGRMLTSKAFEHL 346


>gi|88856265|ref|ZP_01130925.1| holliday junction DNA helicase [marine actinobacterium PHSC20C1]
 gi|88814584|gb|EAR24446.1| holliday junction DNA helicase [marine actinobacterium PHSC20C1]
          Length = 343

 Score =  318 bits (816), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 148/333 (44%), Positives = 216/333 (64%), Gaps = 4/333 (1%)

Query: 1   MMDREGLLSRNVSQEDADIS---LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M D E + +    + +A+++    LRP++L+EF GQ +    L++ ++AA  +    DH+
Sbjct: 1   MTDNEDVGANPTIESEAELAFEGALRPKSLDEFVGQQKVRGQLQLLLKAAAMQNRTADHI 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTLA +VA E     R +SGP I  AGDLAA+L++L   +VLFIDEIHR+
Sbjct: 61  LLAGPPGLGKTTLAMIVAHESNRPLRMSSGPAIQHAGDLAAVLSSLLPGEVLFIDEIHRM 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           +   EE+LY AMEDF++D+MVG+G  A S+ ++++ FTL+ ATTR GLL NPL+DRFG  
Sbjct: 121 ARSAEEMLYLAMEDFRIDIMVGKGAGATSIPLDIAPFTLVGATTRSGLLPNPLRDRFGFT 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
             L FY+  +L+ ++ R A +  L +   A  EIA R RGTPRIA RLLRRVRD+A V H
Sbjct: 181 AHLEFYDEPELEQVLVRAAVMLDLDIDRTAIAEIAGRCRGTPRIANRLLRRVRDYALVNH 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
               +R+   AAL    +D+ G D+LD   +  +   F GGPVG+ T++  + E  + +E
Sbjct: 241 IP-ASRDAVRAALELYDVDERGLDRLDRAVMQTVLTRFDGGPVGLSTLAVSVGEEAETVE 299

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
            ++EP++++ G + RTPRGR+    AW+H G+ 
Sbjct: 300 SVVEPFLVRIGLLSRTPRGRVATRAAWEHFGMA 332


>gi|116328923|ref|YP_798643.1| Holliday junction DNA helicase B [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|122283294|sp|Q04YY5|RUVB_LEPBL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|116121667|gb|ABJ79710.1| Holliday junction DNA helicase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
          Length = 341

 Score =  318 bits (816), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 148/306 (48%), Positives = 207/306 (67%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP  L EF GQ E  +NL V+++AAK R  ALDHVL  GPPGLGKTTLA +V+ ELG  
Sbjct: 19  LRPSLLSEFIGQKEVLNNLTVYVQAAKNRKRALDHVLISGPPGLGKTTLAGIVSNELGTR 78

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
              TS PVI K  DLA LLT++ + ++LFIDEIH L   +EEILYPAME++ +DL++GEG
Sbjct: 79  LTITSAPVITKGADLARLLTSMGENEILFIDEIHTLHKKLEEILYPAMENYMIDLVIGEG 138

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            +A+ V+I L  FTL+ ATTR GL++ PL+ RFGI +RL++Y  E++K IV R +++ G+
Sbjct: 139 VTAQMVQIPLKPFTLVGATTRSGLISEPLKSRFGIQLRLDYYNDEEMKEIVLRSSRILGV 198

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + D+AA EI  RSR TPRIA  LL+R+RDF+EV    ++ + +   A  ++ ID +G D
Sbjct: 199 KIEDDAALEIGKRSRKTPRIANHLLKRIRDFSEVEGNLSVKKGLCLKAFEKMGIDDLGLD 258

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   + GGPVG++ I+  + E    IED  E +M++ G I RTP GR+   
Sbjct: 259 GMDRQILGCMIDRYKGGPVGLKAIAVVVGEEEKTIEDTYESFMVRIGLINRTPAGRVATE 318

Query: 322 IAWQHL 327
            A++ L
Sbjct: 319 KAYRQL 324


>gi|119356405|ref|YP_911049.1| Holliday junction DNA helicase RuvB [Chlorobium phaeobacteroides
           DSM 266]
 gi|166231481|sp|A1BDZ8|RUVB_CHLPD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|119353754|gb|ABL64625.1| Holliday junction DNA helicase RuvB [Chlorobium phaeobacteroides
           DSM 266]
          Length = 346

 Score =  318 bits (816), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 168/326 (51%), Positives = 223/326 (68%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M  E L +   + E      +RP  +++FTGQ     NL+VFI AAK R +ALDHVL  G
Sbjct: 1   MKIELLNTPADALEIRYEEQIRPLKMDDFTGQQRLTDNLRVFISAAKIRGDALDHVLLSG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+G N + TSGP++ KAG+LA LLT+L   DVLFIDEIHRL   V
Sbjct: 61  PPGLGKTTLANIIASEMGGNIKVTSGPMLDKAGNLAGLLTSLRKGDVLFIDEIHRLPAAV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE LY AMEDF++D+M+  GPSAR+V++ +  FTL+ ATTR GLLT+PL+ RFGI  R +
Sbjct: 121 EEYLYSAMEDFRIDIMLDSGPSARAVQLRIEPFTLVGATTRSGLLTSPLRARFGISSRFD 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y  E L+ I+ R + + G+ VT EAA EIA RSRGTPRIA RLLRR RDFA+VA +  I
Sbjct: 181 YYPPELLERIILRASGILGIGVTTEAAGEIAGRSRGTPRIANRLLRRARDFAQVADSFVI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
             +IA   L  L ID+ G D +D + +  I   F GGPVG+ +++  + E +D IE++ E
Sbjct: 241 NHDIAMTTLASLEIDEEGLDDMDKKIMDTIVNKFNGGPVGVASLAVSVGEEQDTIEEVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHL 327
           PY+IQ G++ RTPRGR+   +A +  
Sbjct: 301 PYLIQAGYLARTPRGRVATRLALKRF 326


>gi|78211670|ref|YP_380449.1| Holliday junction DNA helicase B [Synechococcus sp. CC9605]
 gi|97190404|sp|Q3AND8|RUVB_SYNSC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|78196129|gb|ABB33894.1| Holliday junction DNA helicase RuvB [Synechococcus sp. CC9605]
          Length = 348

 Score =  318 bits (816), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 155/328 (47%), Positives = 213/328 (64%), Gaps = 5/328 (1%)

Query: 5   EGLLSRNVSQEDA---DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           E L+    + E+        LRP+ L+++ GQ E    L + ++AA  R +ALDHVL  G
Sbjct: 17  EALMDPQQAPEEVVSRPEDKLRPQRLDDYIGQSELKQVLGIAVQAALGRGDALDHVLLYG 76

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTT+A V+A E+GV+ + TS P + +  D+  LL NL+ RD+LFIDEIHRLS + 
Sbjct: 77  PPGLGKTTMAMVLAEEMGVHCKVTSAPALERPRDIVGLLVNLQPRDLLFIDEIHRLSRVA 136

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMED +LDL VG+G +AR+  ++L  FTL+ ATTR G L++PL+DRFG+  RL 
Sbjct: 137 EELLYPAMEDRRLDLTVGKGSTARTRSLDLPPFTLVGATTRAGSLSSPLRDRFGLIQRLE 196

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA--HAK 239
           FY   DL+ IV+R A L G+ +T +A   IA   RGTPRIA RLLRRVRD A V      
Sbjct: 197 FYGQGDLEAIVERTAGLIGVTLTPQARSSIAASCRGTPRIANRLLRRVRDVASVRGGGGG 256

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I + +   AL    +D  G D  D R L ++  + GGGPVG+ET++A L +    +E +
Sbjct: 257 AINQALVGEALSLHRVDHRGLDASDRRLLQLLIDHHGGGPVGLETLAAALGDDPVTLETV 316

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHL 327
           +EP+++QQG + RTPRGR++   A  HL
Sbjct: 317 VEPFLMQQGLLMRTPRGRMVTDAARSHL 344


>gi|87123213|ref|ZP_01079064.1| Holliday junction DNA helicase RuvB [Synechococcus sp. RS9917]
 gi|86168933|gb|EAQ70189.1| Holliday junction DNA helicase RuvB [Synechococcus sp. RS9917]
          Length = 352

 Score =  318 bits (815), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 160/313 (51%), Positives = 210/313 (67%), Gaps = 1/313 (0%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              LRPR LE++ GQ E    L + ++AA  R +ALDHVL  GPPGLGKTT+A V+A EL
Sbjct: 33  DEGLRPRRLEDYIGQPELKQVLAIAVQAALGRGDALDHVLLYGPPGLGKTTMALVLAEEL 92

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138
           GV+ R TS P + +  D+  LL NL+  ++LFIDEIHRL+ + EE+LYPAMED +LDL V
Sbjct: 93  GVSCRITSAPALERPRDIVGLLVNLQPNELLFIDEIHRLTRVAEELLYPAMEDRRLDLTV 152

Query: 139 GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKL 198
           G+G +AR+  + L  FTL+ ATTR G L++PL+DRFG+  RL FY  EDL+ IV+R A L
Sbjct: 153 GKGSTARTRTLELPPFTLVGATTRAGALSSPLRDRFGLIQRLEFYGQEDLEAIVERAAGL 212

Query: 199 TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH-AKTITREIADAALLRLAIDK 257
            GL +T +A  EIA R RGTPRIA RLLRRVRD A V      I   + D AL    +D 
Sbjct: 213 LGLRLTPQACAEIAGRCRGTPRIANRLLRRVRDVACVRDVEGAIDAALVDDALRLHRVDG 272

Query: 258 MGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317
            G D  D R L ++ +  GGGPVG++T++A L E    +E ++EPY++Q GF+QRTPRGR
Sbjct: 273 RGLDASDRRLLELLLQAHGGGPVGLDTLAAALGEDPTTLEAVVEPYLLQLGFLQRTPRGR 332

Query: 318 LLMPIAWQHLGID 330
           ++     +HLG  
Sbjct: 333 VVTAAGREHLGWP 345


>gi|116330471|ref|YP_800189.1| Holliday junction DNA helicase B [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|122281771|sp|Q04UI9|RUVB_LEPBJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|116124160|gb|ABJ75431.1| Holliday junction DNA helicase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 341

 Score =  318 bits (815), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 148/306 (48%), Positives = 207/306 (67%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP  L EF GQ E  +NL V+++AAK R  ALDHVL  GPPGLGKTTLA +V+ ELG  
Sbjct: 19  LRPSLLSEFIGQKEVLNNLTVYVQAAKNRKRALDHVLISGPPGLGKTTLAGIVSNELGTR 78

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
              TS PVI K  DLA LLT++ + ++LFIDEIH L   +EEILYPAME++ +DL++GEG
Sbjct: 79  LTITSAPVITKGADLARLLTSVGENEILFIDEIHTLHKKLEEILYPAMENYMIDLVIGEG 138

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            +A+ V+I L  FTL+ ATTR GL++ PL+ RFGI +RL++Y  E++K IV R +++ G+
Sbjct: 139 VTAQMVQIPLKPFTLVGATTRSGLISEPLKSRFGIQLRLDYYNDEEMKEIVLRSSRILGV 198

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + D+AA EI  RSR TPRIA  LL+R+RDF+EV    ++ + +   A  ++ ID +G D
Sbjct: 199 KIEDDAALEIGKRSRKTPRIANHLLKRIRDFSEVEGNLSVKKGLCLKAFEKMGIDDLGLD 258

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + L  +   + GGPVG++ I+  + E    IED  E +M++ G I RTP GR+   
Sbjct: 259 GMDRQILGCMIDRYKGGPVGLKAIAVVVGEEEKTIEDTYESFMVRIGLINRTPAGRVATE 318

Query: 322 IAWQHL 327
            A++ L
Sbjct: 319 KAYRQL 324


>gi|260434540|ref|ZP_05788510.1| holliday junction DNA helicase RuvB [Synechococcus sp. WH 8109]
 gi|260412414|gb|EEX05710.1| holliday junction DNA helicase RuvB [Synechococcus sp. WH 8109]
          Length = 348

 Score =  318 bits (815), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 159/328 (48%), Positives = 212/328 (64%), Gaps = 5/328 (1%)

Query: 5   EGLLSRNVSQEDA---DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           E L+    + E+        LRP+ L+++ GQ E    L + +EAA  R +ALDHVL  G
Sbjct: 17  EALVDPQPAPEEVVSRPEDKLRPQFLDDYIGQSELKQVLGIAVEAALGRGDALDHVLLYG 76

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTT+A V+A E+GV  + TS P + +  D+  LL NL+ RD+LFIDEIHRLS + 
Sbjct: 77  PPGLGKTTMAMVLAEEMGVQCKVTSAPALERPRDIVGLLVNLQPRDLLFIDEIHRLSRVA 136

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMED +LDL VG+G +ARS  ++L  FTL+ ATTR G L++PL+DRFG+  RL 
Sbjct: 137 EELLYPAMEDRRLDLTVGKGSTARSRSLDLPPFTLVGATTRAGSLSSPLRDRFGLIQRLE 196

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA--HAK 239
           FY   DL+ IV R A L G+A+T EA   IA   RGTPRIA RLLRRVRD A V      
Sbjct: 197 FYGQGDLEAIVDRTAGLIGVALTPEARSSIAASCRGTPRIANRLLRRVRDVASVRGGGGG 256

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I + +   AL    +D  G D  D R L ++  + GGGPVG+ET++A L +    +E +
Sbjct: 257 VIDQALVGDALSLHRVDHRGLDASDRRLLQLLIDHHGGGPVGLETLAAALGDDPVTLETV 316

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHL 327
           +EP+++QQG + RTPRGR++   A  HL
Sbjct: 317 VEPFLLQQGLLMRTPRGRMVTDAARSHL 344


>gi|291276417|ref|YP_003516189.1| Holliday junction DNA helicase [Helicobacter mustelae 12198]
 gi|290963611|emb|CBG39443.1| holliday junction DNA helicase [Helicobacter mustelae 12198]
          Length = 331

 Score =  317 bits (813), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 165/326 (50%), Positives = 228/326 (69%), Gaps = 6/326 (1%)

Query: 2   MDREGLLSRNVSQEDAD-----ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH 56
           M+R  L SR V+ E  D      + LRP   E++ GQ     NL VFI A+  R E LDH
Sbjct: 1   MERHSLDSRLVNVERIDFEKKEENSLRPSAWEDYIGQERIKKNLDVFIRASLKRGECLDH 60

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHR 116
           +LF GPPGLGKTTL+ ++A ++G   + T+ P+I K+GDLAA++TNL + ++LFIDEIHR
Sbjct: 61  ILFFGPPGLGKTTLSHIIANQMGSMIKVTAAPMIEKSGDLAAIMTNLREGEILFIDEIHR 120

Query: 117 LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
           LS  +EEILYPAMEDF+LD+++G GP+A+++KI+L RFTLI ATTR G+L+NPL+DRFG+
Sbjct: 121 LSPAIEEILYPAMEDFRLDIIIGSGPAAQTIKIDLPRFTLIGATTRAGMLSNPLRDRFGM 180

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
             R+ FY I++L  I++R AK     +   +A EIA RSRGTPRIA RLL+RVRDF+E+ 
Sbjct: 181 SFRMEFYSIQELSLIIERAAKRLDKRIEKNSADEIAKRSRGTPRIALRLLKRVRDFSEIK 240

Query: 237 HAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAI 296
           + + I+      AL  L I+ +GFD LDLRYL  I R+  G P+G+ TI+A +SE    I
Sbjct: 241 NEECISHATTIYALNELGINTLGFDALDLRYLD-ILRSAKGKPIGLSTIAAAMSEDEGTI 299

Query: 297 EDLIEPYMIQQGFIQRTPRGRLLMPI 322
           E+ IEPY++  G++++T RGR+    
Sbjct: 300 EEAIEPYLLANGYLEKTARGRIATDK 325


>gi|157415600|ref|YP_001482856.1| Holliday junction DNA helicase B [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|172047177|sp|A8FN42|RUVB_CAMJ8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|157386564|gb|ABV52879.1| holliday junction DNA helicase RuvB [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|307748243|gb|ADN91513.1| Holliday junction ATP-dependent DNA helicase ruvB [Campylobacter
           jejuni subsp. jejuni M1]
 gi|315931420|gb|EFV10388.1| holliday junction DNA helicase RuvB [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 335

 Score =  317 bits (813), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 162/330 (49%), Positives = 233/330 (70%), Gaps = 2/330 (0%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MDR   + +  S ++   + LRP   + + GQ     NL VFI AAK R E LDH+LF G
Sbjct: 1   MDRIVEIEK-YSFDETYETSLRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSG 59

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           P GLGKTTLA +++ E+G N ++T+ P+I K+GDLAA+LTNL + D+LFIDEIHRLS  +
Sbjct: 60  PAGLGKTTLANIISYEMGANIKTTAAPMIEKSGDLAAILTNLSEGDILFIDEIHRLSPAI 119

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMED++LD+++G GP+A+++KI+L +FTLI ATTR G+L+NPL+DRFG+  RL 
Sbjct: 120 EEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLE 179

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY+  +L  I+Q+ A        ++AA EIA RSR TPRIA RLL+RVRDFA+V   + I
Sbjct: 180 FYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEII 239

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T + A+ AL  L ++++GFD +DLRYL ++       P+G+ +I+A LSE  + IED+IE
Sbjct: 240 TEKRANEALNSLGVNELGFDAMDLRYLELL-TAAKQKPIGLASIAAALSEDENTIEDVIE 298

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           PY++  G+I+RT +GR+    ++  L ++ 
Sbjct: 299 PYLLANGYIERTAKGRIASAKSYSALKLNY 328


>gi|203287495|ref|YP_002222510.1| Holliday junction DNA helicase [Borrelia recurrentis A1]
 gi|201084715|gb|ACH94289.1| Holliday junction DNA helicase [Borrelia recurrentis A1]
          Length = 340

 Score =  317 bits (813), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 149/329 (45%), Positives = 209/329 (63%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD   L S      D +   LRP  L++F+GQ     NL +FI+A++ R EALDHV   G
Sbjct: 1   MDLGFLNSEKNFLYDNNEDDLRPEFLKDFSGQSHIKDNLDIFIKASRDRNEALDHVFLSG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+    + TS P   K  D+  +L  L D+ VLFIDEIHRL   +
Sbjct: 61  PPGLGKTTLASIIALEMNTTIKITSAPAFEKPKDIVGILMTLNDKSVLFIDEIHRLKPAI 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMED+++D +VG+G  AR+V++++ +FTLI ATT+ G + +PL  RFGI  R +
Sbjct: 121 EEMLYIAMEDYKIDCIVGQGAVARTVRMSIPKFTLIGATTKPGKVASPLYARFGIVFRFD 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
            Y  ++L  I++R A +  + + D+AA  +A  SRGTPR+A +LLRR+RDFA+V     I
Sbjct: 181 LYNEDELSKIIKRSAFILNVKLNDKAALLLAKSSRGTPRMANKLLRRMRDFAQVGGYDLI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T ++  A L  L ID  G D+ D   L  +   F GGPVGIET++  + E  D++ED  E
Sbjct: 241 TEDVVTAGLEMLKIDHEGLDEQDRNILKNLILKFRGGPVGIETLAIAVGETADSLEDFYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           PY+I +GFI+RT RGR     A+ HL ++
Sbjct: 301 PYLILRGFIERTNRGRRATDFAYLHLNLN 329


>gi|57238406|ref|YP_179537.1| Holliday junction DNA helicase B [Campylobacter jejuni RM1221]
 gi|148926717|ref|ZP_01810397.1| holliday junction DNA helicase [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|205356192|ref|ZP_03222959.1| holliday junction DNA helicase [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|73621849|sp|Q5HT48|RUVB_CAMJR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|57167210|gb|AAW35989.1| Holliday junction DNA helicase RuvB [Campylobacter jejuni RM1221]
 gi|145845081|gb|EDK22177.1| holliday junction DNA helicase [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|205346035|gb|EDZ32671.1| holliday junction DNA helicase [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|315058836|gb|ADT73165.1| Holliday junction DNA helicase RuvB [Campylobacter jejuni subsp.
           jejuni S3]
          Length = 335

 Score =  317 bits (813), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 161/330 (48%), Positives = 233/330 (70%), Gaps = 2/330 (0%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MDR   + +  S ++   + LRP   + + GQ     NL +FI AAK R E LDH+LF G
Sbjct: 1   MDRIVEIEK-YSFDETYETSLRPSNFDGYIGQESIKKNLNIFIAAAKKRNECLDHILFSG 59

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           P GLGKTTLA +++ E+G N ++T+ P+I K+GDLAA+LTNL + D+LFIDEIHRLS  +
Sbjct: 60  PAGLGKTTLANIISYEMGANIKTTAAPMIEKSGDLAAILTNLSEGDILFIDEIHRLSPAI 119

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMED++LD+++G GP+A+++KI+L +FTLI ATTR G+L+NPL+DRFG+  RL 
Sbjct: 120 EEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLE 179

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY+  +L  I+Q+ A        ++AA EIA RSR TPRIA RLL+RVRDFA+V   + I
Sbjct: 180 FYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEII 239

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T + A+ AL  L ++++GFD +DLRYL ++       P+G+ +I+A LSE  + IED+IE
Sbjct: 240 TEKRANEALNSLGVNELGFDAMDLRYLELL-TAAKQKPIGLASIAAALSEDENTIEDVIE 298

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           PY++  G+I+RT +GR+    ++  L ++ 
Sbjct: 299 PYLLANGYIERTAKGRIASAKSYSALKLNY 328


>gi|283956748|ref|ZP_06374224.1| holliday junction DNA helicase RuvB [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|283791723|gb|EFC30516.1| holliday junction DNA helicase RuvB [Campylobacter jejuni subsp.
           jejuni 1336]
          Length = 335

 Score =  317 bits (812), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 162/330 (49%), Positives = 233/330 (70%), Gaps = 2/330 (0%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MDR   + +  S ++   + LRP   + + GQ     NL VFI AAK R E LDH+LF G
Sbjct: 1   MDRIVEIEK-YSFDETYETSLRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSG 59

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           P GLGKTTLA +++ E+G N ++T+ P+I K+GDLAA+LTNL + D+LFIDEIHRLS  +
Sbjct: 60  PAGLGKTTLANIISYEMGANIKTTAAPMIEKSGDLAAILTNLSEGDILFIDEIHRLSPAI 119

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMED++LD+++G GP+A+++KI+L +FTLI ATTR G+L+NPL+DRFG+  RL 
Sbjct: 120 EEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLE 179

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY+  +L  I+Q+ A        ++AA EIA RSR TPRIA RLL+RVRDFA+V   + I
Sbjct: 180 FYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEII 239

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T + A+ AL  L ++++GFD +DLRYL ++       P+G+ +I+A LSE  + IED+IE
Sbjct: 240 TEKRANEALNSLGVNELGFDAMDLRYLELL-TAAKQKPIGLASIAAALSEDENTIEDVIE 298

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           PY++  G+I+RT +GR+    ++  L ++ 
Sbjct: 299 PYLLANGYIERTAKGRIASTKSYSALKLNY 328


>gi|46204582|ref|ZP_00209471.1| COG2255: Holliday junction resolvasome, helicase subunit
           [Magnetospirillum magnetotacticum MS-1]
          Length = 293

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 207/294 (70%), Positives = 248/294 (84%), Gaps = 1/294 (0%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           ++     +D D S +RP +L EF GQ  A +N+++FIEAAK   +ALDHVLFVGPPGLGK
Sbjct: 1   MNPEQRPDDVDQS-IRPLSLAEFIGQRAARANMQIFIEAAKKTGQALDHVLFVGPPGLGK 59

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127
           TTLAQ+VARELGVNFRSTSGPVIAKAGDLAA LTNLE+RDVLFIDEIHRL+  VEEILYP
Sbjct: 60  TTLAQIVARELGVNFRSTSGPVIAKAGDLAAQLTNLEERDVLFIDEIHRLNPAVEEILYP 119

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           AMED+QLDL++GEGP+ARSVKI L +FTL+ ATTR GLLT PL+DRFGIPIRL FYEI++
Sbjct: 120 AMEDYQLDLIIGEGPAARSVKIELPKFTLVGATTRAGLLTTPLRDRFGIPIRLEFYEIDE 179

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           L+ IV+RGA++ GL +++E A EIA R+RGTPRIAGRLLRRVRDFA V  A+T++R IAD
Sbjct: 180 LELIVRRGARVLGLGMSEEGANEIAKRARGTPRIAGRLLRRVRDFAIVEEAQTVSRAIAD 239

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
            AL  L +D +G D +D +YLT+IA +FGGGPVGIETI+A LSEPRDAIED+IE
Sbjct: 240 RALQMLDVDPVGLDVMDRKYLTLIASSFGGGPVGIETIAAALSEPRDAIEDIIE 293


>gi|203283952|ref|YP_002221692.1| Holliday junction DNA helicase [Borrelia duttonii Ly]
 gi|201083395|gb|ACH92986.1| Holliday junction DNA helicase [Borrelia duttonii Ly]
          Length = 340

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 148/329 (44%), Positives = 209/329 (63%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD   L S      D +   LRP  L++F+GQ     NL +FI+A++ R EALDHV   G
Sbjct: 1   MDLGFLNSEKNFLYDNNEDDLRPEFLKDFSGQSHIKDNLDIFIKASRDRNEALDHVFLSG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+    + TS P   K  D+  +L  L D+ VLFIDEIHRL   +
Sbjct: 61  PPGLGKTTLASIIALEMNTTIKITSAPAFEKPKDIVGILMTLNDKSVLFIDEIHRLKPAI 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMED+++D +VG+G  AR+V++++ +FTLI ATT+ G + +PL  RFGI  R +
Sbjct: 121 EEMLYIAMEDYKIDCIVGQGAVARTVRMSIPKFTLIGATTKPGKVASPLYARFGIVFRFD 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
            Y  ++L  I++R A +  + + D+AA  +A  SRGTPR+A +LLRR+RDFA+V     I
Sbjct: 181 LYNEDELSKIIKRSAFILNVKLNDKAALLLAKSSRGTPRMANKLLRRMRDFAQVGGYDLI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T ++  A L  L ID  G D+ D   L  +   F GGPVGIET++  + E  D++ED  E
Sbjct: 241 TEDVVTAGLEMLKIDHEGLDEQDRNILKNLILKFRGGPVGIETLAIAVGETADSLEDFYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           PY++ +GFI+RT RGR     A+ HL ++
Sbjct: 301 PYLVLRGFIERTNRGRRATDFAYLHLNLN 329


>gi|86150918|ref|ZP_01069134.1| Holliday junction DNA helicase RuvB [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|315124802|ref|YP_004066806.1| Holliday junction DNA helicase RuvB [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|85842088|gb|EAQ59334.1| Holliday junction DNA helicase RuvB [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|315018524|gb|ADT66617.1| Holliday junction DNA helicase RuvB [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
          Length = 335

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 160/330 (48%), Positives = 232/330 (70%), Gaps = 2/330 (0%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MDR   + +  S ++   + LRP   + + GQ     NL +FI AAK R E LDH+LF G
Sbjct: 1   MDRIVEIEK-YSFDETYETSLRPSNFDGYIGQESIKKNLNIFITAAKKRNECLDHILFSG 59

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           P GLGKTTLA +++ E+  N ++T+ P+I K+GDLAA+LTNL + D+LFIDEIHRLS  +
Sbjct: 60  PAGLGKTTLANIISYEMDANIKTTAAPMIEKSGDLAAILTNLSEGDILFIDEIHRLSPAI 119

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMED++LD+++G GP+A+++KI+L +FTLI ATTR G+L+NPL+DRFG+  RL 
Sbjct: 120 EEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLE 179

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY+  +L  I+Q+ A        ++AA EIA RSR TPRIA RLL+RVRDFA+V   + I
Sbjct: 180 FYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEII 239

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T + A+ AL  L ++++GFD +DLRYL ++       P+G+ +I+A LSE  + IED+IE
Sbjct: 240 TEKRANEALNSLGVNELGFDAMDLRYLELL-TAAKQKPIGLASIAAALSEDENTIEDVIE 298

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           PY++  G+I+RT +GR+    ++  L ++ 
Sbjct: 299 PYLLANGYIERTAKGRIASAKSYSALKLNY 328


>gi|309811444|ref|ZP_07705230.1| Holliday junction DNA helicase RuvB [Dermacoccus sp. Ellin185]
 gi|308434591|gb|EFP58437.1| Holliday junction DNA helicase RuvB [Dermacoccus sp. Ellin185]
          Length = 364

 Score =  317 bits (811), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 160/329 (48%), Positives = 217/329 (65%), Gaps = 1/329 (0%)

Query: 6   GLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
            L+  N ++++  +   LRP+ L +F GQ      L + IEAA+ RA   DH+LF GPPG
Sbjct: 16  RLVDPNGTEDEQQLEAALRPKKLADFPGQPRVREQLSLVIEAARRRATPPDHILFSGPPG 75

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKT+LA +VA EL    R TSGP I  AGDLAA+L++L + +VLF+DEIHR++   EE+
Sbjct: 76  LGKTSLAMIVASELEAPIRITSGPAIQHAGDLAAILSSLNEGEVLFLDEIHRMARPAEEM 135

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LY AMEDF++D++VG+GP A ++ + L RFT++ ATTR GLL  PL+DRFG    L++Y+
Sbjct: 136 LYLAMEDFRVDVIVGKGPGATAIPLELPRFTVVGATTRAGLLPAPLRDRFGFTGHLDYYD 195

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
             DL  I+ R A L G+  T E   EIA RSRGTPRIA RLLRRVRD+A+V     +   
Sbjct: 196 AADLADILARNADLLGVPATREGITEIAGRSRGTPRIANRLLRRVRDYAQVHGRHVVDLT 255

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
            A AAL    +D  G D+LD   L  + R FGGGPVG+ T++  + E  D +E + EPY+
Sbjct: 256 SARAALELFDVDDDGLDRLDRAVLEALCRRFGGGPVGLSTLAVAVGEEPDTVETVAEPYL 315

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +++G++ RTPRGR   P AW HLG+  P 
Sbjct: 316 VREGYMIRTPRGRAASPRAWTHLGLRPPD 344


>gi|206900986|ref|YP_002251319.1| holliday junction DNA helicase RuvB [Dictyoglomus thermophilum
           H-6-12]
 gi|206740089|gb|ACI19147.1| holliday junction DNA helicase RuvB [Dictyoglomus thermophilum
           H-6-12]
          Length = 332

 Score =  317 bits (811), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 146/316 (46%), Positives = 210/316 (66%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           V +E A  + LRP++L EF GQ +    L + I AAK R EA+DH+LFVGPPG+GKTTLA
Sbjct: 10  VQREPALDNALRPKSLSEFIGQEKIKERLALIINAAKKREEAIDHILFVGPPGVGKTTLA 69

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            ++A E     +  S P I K+GDL ALLT +E++ V+FIDEIHRLS  +EEILY A+ED
Sbjct: 70  LIIAEEQNTQIKMISAPSIQKSGDLIALLTGIEEKGVIFIDEIHRLSPSLEEILYSALED 129

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
             + ++ G+GP  + + + L  FTLI ATTR  LL+ PL+DRFG    L+FY  E++  I
Sbjct: 130 GSISIVAGKGPGGKVLSLKLPPFTLIGATTRPALLSTPLRDRFGFIATLDFYTHEEMVKI 189

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           ++R  K+ GL ++ E+  E+A RSRG PRIA R+L+R++D+ ++   K I        L 
Sbjct: 190 IERSQKILGLNLSYESIYEVAKRSRGVPRIANRILKRIKDYVDLRDNKNIDLTETKKVLE 249

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            + ID+ G D+LD + L  +   F GGPVG++T++A L+E  + IE + EPY+++ GFIQ
Sbjct: 250 LIGIDENGLDELDRKILFTLKDKFSGGPVGLKTLAAVLNESPETIESIYEPYLLRIGFIQ 309

Query: 312 RTPRGRLLMPIAWQHL 327
           RT RGR++ P+   H+
Sbjct: 310 RTSRGRVITPLGLAHI 325


>gi|189499557|ref|YP_001959027.1| Holliday junction DNA helicase RuvB [Chlorobium phaeobacteroides
           BS1]
 gi|189494998|gb|ACE03546.1| Holliday junction DNA helicase RuvB [Chlorobium phaeobacteroides
           BS1]
          Length = 338

 Score =  317 bits (811), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 162/323 (50%), Positives = 218/323 (67%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
                E+     +RP  L++F+GQ     N++VFI AA+ R EALDHVLF GPPGLGKTT
Sbjct: 4   PTSPAEEKFEEQIRPLLLDDFSGQKRLTDNMRVFITAARQRGEALDHVLFSGPPGLGKTT 63

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           LA ++A ELG   + +SGP++ K G+LA +LT+L   DVLFIDEIHRL+  VEE LY AM
Sbjct: 64  LAHIIASELGGGIKISSGPLLDKPGNLAGILTSLNKGDVLFIDEIHRLTPAVEEYLYSAM 123

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           EDF++D+++  GPSAR+V++ L  FTL+ ATTR G+LT+PL+ RFGI  RL++Y  E L+
Sbjct: 124 EDFRIDILLESGPSARAVQLKLEPFTLVGATTRAGMLTSPLRARFGISNRLDYYSPEVLE 183

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            I+ R A + G+ +   AA EIA RSRGTPRIA RLL+R RDF +VA+A TIT E+A   
Sbjct: 184 RIIVRTATILGVDIDGNAAVEIARRSRGTPRIANRLLKRARDFTQVANAATITAELARKT 243

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           L  L ID  G D +D + +  +   F GGPVGI +++  + E ++ IE++ EPY+IQ GF
Sbjct: 244 LDALEIDDDGLDDMDKKIMLTLIEKFNGGPVGISSLAVSVGEEQETIEEVYEPYLIQTGF 303

Query: 310 IQRTPRGRLLMPIAWQHLGIDIP 332
           I RT RGR+    A+       P
Sbjct: 304 IARTSRGRVATKNAYMKFTGSYP 326


>gi|227875447|ref|ZP_03993588.1| crossover junction endoribonuclease subunit B [Mobiluncus mulieris
           ATCC 35243]
 gi|269977301|ref|ZP_06184274.1| holliday junction DNA helicase RuvB [Mobiluncus mulieris 28-1]
 gi|227844001|gb|EEJ54169.1| crossover junction endoribonuclease subunit B [Mobiluncus mulieris
           ATCC 35243]
 gi|269934604|gb|EEZ91165.1| holliday junction DNA helicase RuvB [Mobiluncus mulieris 28-1]
          Length = 353

 Score =  317 bits (811), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 160/328 (48%), Positives = 219/328 (66%), Gaps = 1/328 (0%)

Query: 6   GLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
            L+       E    + LRP+TL +F GQ    + L + + AAK R +A+DHVL  GPPG
Sbjct: 13  RLVDEGAEDAERVAEAALRPKTLMDFVGQNTVKTQLNLVLRAAKERGDAVDHVLLAGPPG 72

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLA ++A E+  + R TSGP I+ AGDLAA+L++L++ DVLFIDEIHRL+   EE+
Sbjct: 73  LGKTTLAMIIAAEMNSSLRLTSGPAISHAGDLAAILSSLQEGDVLFIDEIHRLARPAEEM 132

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LY AMEDF++D++VG+GP A S+ ++L +FTL+ ATTR GLL  PL+DRFG    +  YE
Sbjct: 133 LYLAMEDFRVDVVVGKGPGATSIPLSLPQFTLVGATTRAGLLPAPLRDRFGFTAHMEPYE 192

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            EDL  IV+R A L G  +T EAA EIA RSRGTPR+A RLLRRV DFA V   +    E
Sbjct: 193 AEDLSLIVKRSAALLGACITGEAAHEIAKRSRGTPRVANRLLRRVIDFALVHGNEECDLE 252

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
            A A L    +D+MG D+LD   L  I   F GGPVG  T++  + E ++ +E+++EP++
Sbjct: 253 AAQATLKLFEVDEMGLDRLDRDVLHAIVERFQGGPVGAGTLAVSVGEEKETVEEVVEPFL 312

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++ G + RT RGR++    + HLG+ +P
Sbjct: 313 VRVGLLARTQRGRVITAKGYTHLGLPVP 340


>gi|153952346|ref|YP_001397506.1| Holliday junction DNA helicase B [Campylobacter jejuni subsp.
           doylei 269.97]
 gi|166231479|sp|A7H1X6|RUVB_CAMJD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|152939792|gb|ABS44533.1| Holliday junction DNA helicase RuvB [Campylobacter jejuni subsp.
           doylei 269.97]
          Length = 335

 Score =  316 bits (810), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 160/330 (48%), Positives = 232/330 (70%), Gaps = 2/330 (0%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MDR   + +  S ++   + LRP   + + GQ     NL +FI AAK R E LDH+LF G
Sbjct: 1   MDRIVEIEK-YSLDETYETSLRPSNFDGYIGQESIKKNLNIFITAAKKRNECLDHILFSG 59

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           P GLGKTTLA +++ E+  N ++T+ P+I K+GDLAA+LTNL + D+LFIDEIHRLS  +
Sbjct: 60  PAGLGKTTLANIISYEMDANIKTTAAPMIEKSGDLAAILTNLSEGDILFIDEIHRLSPAI 119

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMED++LD+++G GP+A+++KI+L +FTLI ATTR G+L+NPL+DRFG+  RL 
Sbjct: 120 EEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLE 179

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY+  +L  I+Q+ A        ++AA EIA RSR TPRIA RLL+RVRDFA+V   + I
Sbjct: 180 FYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEII 239

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T + A+ AL  L ++++GFD +DLRYL ++       P+G+ +I+A LSE  + IED+IE
Sbjct: 240 TEKRANEALNSLGVNELGFDAMDLRYLELL-TAAKQKPIGLASIAAALSEDENTIEDVIE 298

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           PY++  G+I+RT +GR+    ++  L ++ 
Sbjct: 299 PYLLANGYIERTAKGRIASTKSYSALKLNY 328


>gi|86150115|ref|ZP_01068343.1| Holliday junction DNA helicase RuvB [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|86152906|ref|ZP_01071111.1| Holliday junction DNA helicase RuvB [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|88596151|ref|ZP_01099388.1| Holliday junction DNA helicase RuvB [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|121612638|ref|YP_001001020.1| Holliday junction DNA helicase RuvB [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|167005923|ref|ZP_02271681.1| Holliday junction DNA helicase B [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|218562971|ref|YP_002344750.1| Holliday junction DNA helicase RuvB [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|20140318|sp|Q9PMT7|RUVB_CAMJE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|166231480|sp|A1W0X9|RUVB_CAMJJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|85839561|gb|EAQ56822.1| Holliday junction DNA helicase RuvB [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|85843791|gb|EAQ61001.1| Holliday junction DNA helicase RuvB [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|87249952|gb|EAQ72911.1| Holliday junction DNA helicase RuvB [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|88190992|gb|EAQ94964.1| Holliday junction DNA helicase RuvB [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|112360677|emb|CAL35474.1| holliday junction DNA helicase [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|284926582|gb|ADC28934.1| Holliday junction DNA helicase RuvB [Campylobacter jejuni subsp.
           jejuni IA3902]
 gi|315928097|gb|EFV07416.1| holliday junction DNA helicase RuvB [Campylobacter jejuni subsp.
           jejuni DFVF1099]
          Length = 335

 Score =  316 bits (810), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 161/330 (48%), Positives = 232/330 (70%), Gaps = 2/330 (0%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MDR   + +  S ++   + LRP   + + GQ     NL VFI AAK R E LDH+LF G
Sbjct: 1   MDRIVEIEK-YSFDETYETSLRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSG 59

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           P GLGKTTLA +++ E+  N ++T+ P+I K+GDLAA+LTNL + D+LFIDEIHRLS  +
Sbjct: 60  PAGLGKTTLANIISYEMSANIKTTAAPMIEKSGDLAAILTNLSEGDILFIDEIHRLSPAI 119

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMED++LD+++G GP+A+++KI+L +FTLI ATTR G+L+NPL+DRFG+  RL 
Sbjct: 120 EEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLE 179

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY+  +L  I+Q+ A        ++AA EIA RSR TPRIA RLL+RVRDFA+V   + I
Sbjct: 180 FYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEII 239

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T + A+ AL  L ++++GFD +DLRYL ++       P+G+ +I+A LSE  + IED+IE
Sbjct: 240 TEKRANEALNSLGVNELGFDAMDLRYLELL-TAAKQKPIGLASIAAALSEDENTIEDVIE 298

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           PY++  G+I+RT +GR+    ++  L ++ 
Sbjct: 299 PYLLANGYIERTAKGRIASAKSYSALKLNY 328


>gi|78187473|ref|YP_375516.1| Holliday junction DNA helicase RuvB [Chlorobium luteolum DSM 273]
 gi|97190196|sp|Q3B2F8|RUVB_PELLD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|78167375|gb|ABB24473.1| Holliday junction DNA helicase RuvB [Chlorobium luteolum DSM 273]
          Length = 344

 Score =  316 bits (810), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 163/322 (50%), Positives = 223/322 (69%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M  E L +   + E      +RPR +E+FTGQ     NLKVFI AA+ R +ALDHVL  G
Sbjct: 1   MRIELLNTPVDAVELRIEDQIRPRRMEDFTGQQRLTDNLKVFISAARMRGDALDHVLLSG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+G + ++TSGP++ KAG+LA +LT+L+  DVLFIDEIHR+   V
Sbjct: 61  PPGLGKTTLAHIIAEEMGGSLKATSGPMLDKAGNLAGILTSLQKGDVLFIDEIHRMPPAV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE LY AMEDF++D+M+  GPSAR+V++ +  FTL+ ATTR GLLT PL+ RFGI  R +
Sbjct: 121 EEYLYSAMEDFRIDIMLDSGPSARAVQLKVEPFTLVGATTRSGLLTAPLRARFGISNRFD 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y  E L+TI+ R + + G+ +  +AA EIA RSRGTPRIA RLLRR RDFA+V   + I
Sbjct: 181 YYPPELLETILMRSSTILGIGIERDAASEIAGRSRGTPRIANRLLRRARDFAQVDGMEII 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           +R  A   L  L ID+ G D++D + +  +   F GGPVG+ +++  + E +D IE++ E
Sbjct: 241 SRPTAMKTLDSLEIDEEGLDEMDKKIMDAVVNRFSGGPVGVGSLAVSVGEEQDTIEEVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIA 323
           PY+IQ G++ RTPRGR+    A
Sbjct: 301 PYLIQAGYLSRTPRGRVATQRA 322


>gi|323359953|ref|YP_004226349.1| holliday junction resolvasome, helicase subunit [Microbacterium
           testaceum StLB037]
 gi|323276324|dbj|BAJ76469.1| holliday junction resolvasome, helicase subunit [Microbacterium
           testaceum StLB037]
          Length = 347

 Score =  316 bits (810), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 159/339 (46%), Positives = 214/339 (63%), Gaps = 6/339 (1%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D     + +   E A    LRP +L EF GQ +    L++ ++AA+ +  + DH+L  
Sbjct: 1   MADVRDAGTPDDETELAIEGALRPTSLAEFVGQQKVRGQLQLLLDAARIQQRSPDHILLS 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTTLA +VA E G   R +SGP I  AGDLAALL++L   +VLFIDEIHR++  
Sbjct: 61  GPPGLGKTTLAMIVAHESGRPLRLSSGPAIQHAGDLAALLSSLTPGEVLFIDEIHRMARS 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            EE+LY AMEDF++D+MVG+G  A S+ ++LS FTL+ ATTR GLL NPL+DRFG    L
Sbjct: 121 AEEMLYLAMEDFRIDIMVGKGAGATSIPLDLSPFTLVGATTRAGLLPNPLRDRFGFTAHL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +YE E+L+ +V R A +  + +   A  EIA RSRGTPRIA RLLRRVRD+  V     
Sbjct: 181 EYYEPEELERVVSRSASMLDVGLPGTARSEIARRSRGTPRIANRLLRRVRDYLVVHGPSE 240

Query: 241 ITREIAD------AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRD 294
            T +         AAL    +D +G D+LD   L  + R F GGPVG+ T++  + E  +
Sbjct: 241 GTDDGDADVRTVGAALDLYDVDAIGLDRLDRAVLDALVRRFRGGPVGLSTLAVAVGEEPE 300

Query: 295 AIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            IE ++EPY+++ GF+ RTPRGR+  P A+ HLG   P 
Sbjct: 301 TIESVVEPYLVRIGFMGRTPRGRVATPEAYDHLGAPHPD 339


>gi|284929534|ref|YP_003422056.1| Holliday junction DNA helicase subunit RuvB [cyanobacterium UCYN-A]
 gi|284809978|gb|ADB95675.1| Holliday junction DNA helicase subunit RuvB [cyanobacterium UCYN-A]
          Length = 352

 Score =  316 bits (809), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 142/314 (45%), Positives = 211/314 (67%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           +++  I  +RP + +E+ GQ +  + L + I+AAK R E +DH+L  GPPGLGKTT++ +
Sbjct: 33  EKNYLIDDIRPNSFKEYIGQKDLKNVLDIIIKAAKLREEPIDHLLLYGPPGLGKTTISLI 92

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +A E+GV+ + TS P + K  D+  LL  L+  DVLFIDEIHRL+ + EEILYP MED++
Sbjct: 93  LASEMGVDCKITSAPSLEKPKDIIGLLVKLKPGDVLFIDEIHRLNHLTEEILYPVMEDYR 152

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           LD+ +G+G   +   I+L +FTLI ATT++G ++ PL+DRFG+  RL +YE  +L  I++
Sbjct: 153 LDITIGKGQLTKISSISLPKFTLIGATTKIGSISFPLRDRFGLVQRLKYYEYHELALIIK 212

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A +    +TDE A EIA+RSRGTPRIA RLL+R+RD+ +V     IT+++A  AL   
Sbjct: 213 RSALVLKTPITDEGANEIAIRSRGTPRIANRLLKRIRDYMQVKQMNLITKDLAIDALNLY 272

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            ID  G +  D   L  +   F GGPVG+E I+A   E    I+++ EPY++Q G+I RT
Sbjct: 273 KIDSRGLNWTDHLILETMIFQFNGGPVGLEAIAASTGEDIKTIKEVYEPYLLQIGYINRT 332

Query: 314 PRGRLLMPIAWQHL 327
           PRGR++   A++++
Sbjct: 333 PRGRVVTEAAYKYI 346


>gi|110597058|ref|ZP_01385347.1| Holliday junction DNA helicase RuvB [Chlorobium ferrooxidans DSM
           13031]
 gi|110341249|gb|EAT59714.1| Holliday junction DNA helicase RuvB [Chlorobium ferrooxidans DSM
           13031]
          Length = 351

 Score =  315 bits (808), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 164/319 (51%), Positives = 216/319 (67%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           E L +   + E      +RP  + +F GQ     NLKVFI AAK R +ALDHVL  GPPG
Sbjct: 15  ELLNTPPDAVETRFEEQIRPLRMGDFAGQQRLTDNLKVFISAAKIRGDALDHVLLSGPPG 74

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLA ++A E+G + ++TSGP++ KAG+LA LLT L+  DVLFIDEIHR+   VEE 
Sbjct: 75  LGKTTLAYIIASEMGGSIKATSGPLLDKAGNLAGLLTGLQKGDVLFIDEIHRMPPAVEEY 134

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LY AMEDF++D+M+  GPSAR+V++ +  FTLI ATTR GLLT+PL+ RFGI  R ++Y 
Sbjct: 135 LYSAMEDFRIDIMLDSGPSARAVQLRIEPFTLIGATTRSGLLTSPLRARFGINSRFDYYS 194

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            E L+ I+ R + + G+ +  EAA EIA RSRGTPRIA RLLRR RDFA+V     I R 
Sbjct: 195 PELLEKIIVRASGILGIGIDGEAAKEIAGRSRGTPRIANRLLRRARDFAQVDSEALINRA 254

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           IA   L  L ID+ G D +D + +  I   F GGPVGI +++  + E ++ IE++ EPY+
Sbjct: 255 IAMKTLECLEIDEEGLDDMDKKIMETIVNKFNGGPVGIASLAVSVGEEQNTIEEVYEPYL 314

Query: 305 IQQGFIQRTPRGRLLMPIA 323
           IQ G++ RTPRGR+    A
Sbjct: 315 IQAGYLTRTPRGRVATLQA 333


>gi|58584510|ref|YP_198083.1| Holliday junction DNA helicase B [Wolbachia endosymbiont strain TRS
           of Brugia malayi]
 gi|81311657|sp|Q5GT33|RUVB_WOLTR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|58418826|gb|AAW70841.1| Holliday junction resolvasome, helicase subunit, RuvB [Wolbachia
           endosymbiont strain TRS of Brugia malayi]
          Length = 326

 Score =  315 bits (808), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 180/317 (56%), Positives = 235/317 (74%), Gaps = 2/317 (0%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           ED     +RP  L++F GQ +   NLKVFI AAK R EALDHVL  GPPGLGKTTLAQ++
Sbjct: 12  EDVRNLNIRPEQLDDFFGQKDLIQNLKVFINAAKTRTEALDHVLLHGPPGLGKTTLAQII 71

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           ++EL V+FR+TSGP++ KAGDLAA+LT L  +DVLFIDEIHRL+  +EE+LY AMEDF L
Sbjct: 72  SKELRVSFRATSGPLLNKAGDLAAVLTTLNAKDVLFIDEIHRLNRSIEEVLYTAMEDFCL 131

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           DL+VGEGPS R+++I+L  FTL+ ATTR+GLL+ PL+DRFGIP+RL FY  E+L  I++R
Sbjct: 132 DLLVGEGPSTRTLRIDLPPFTLVGATTRLGLLSAPLRDRFGIPLRLEFYSFEELVDIIKR 191

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
           G K+    + ++A  EIA R+RGTPRIA RLLRR+RDF EV   K IT +IAD+AL +L 
Sbjct: 192 GTKVFSAEIEEDAIQEIACRARGTPRIALRLLRRIRDFVEVKDNKKITHKIADSALSKLG 251

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           IDKMG ++LD+ YL  +      G VGI+TIS  LSE    IE+ +EPY+++  F++RTP
Sbjct: 252 IDKMGLNKLDVDYLRFLFNT--SGSVGIDTISIALSEDSGNIEETVEPYLVKISFVKRTP 309

Query: 315 RGRLLMPIAWQHLGIDI 331
           RGR+L     ++L +  
Sbjct: 310 RGRVLTDQGKEYLSLQY 326


>gi|188996117|ref|YP_001930368.1| Holliday junction DNA helicase RuvB [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188931184|gb|ACD65814.1| Holliday junction DNA helicase RuvB [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 324

 Score =  315 bits (808), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 156/312 (50%), Positives = 220/312 (70%), Gaps = 5/312 (1%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            +RP  L++F GQ E    LKVFIEA K + + LDH +  GPPGLGKTTLA ++A EL  
Sbjct: 7   SIRPLKLDDFIGQEEVKKQLKVFIEACKIQGKTLDHTILSGPPGLGKTTLATIIANELAT 66

Query: 81  NFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           N + TS PV+ K GDL  LLT+L++ D+LFIDEIHRL+  +EEILY AMEDF++D++VG 
Sbjct: 67  NIKITSAPVLEKKGDLIGLLTSLKEGDILFIDEIHRLTPTLEEILYSAMEDFKVDVIVGG 126

Query: 141 GPS-----ARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           G +     A+++++++++FTLI ATTR+G+L+ PL  RFGI + L+FY+ + LK I+ R 
Sbjct: 127 GSNRKARSAKAIRLDINKFTLIGATTRIGMLSTPLISRFGIILNLDFYDQQSLKEIILRS 186

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255
           AK+  + +T+E A EIA  S+GTPRIA +LL+RV D+A +     I RE A  AL  L+I
Sbjct: 187 AKILNINITEEGALEIAKHSKGTPRIANKLLKRVYDYAVIHKKDVIDRETAFDALRFLSI 246

Query: 256 DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR 315
            K G D L L+YL  +   F GGPVG+ TIS  +SE +  IE++IEPY+++ GFI+RT +
Sbjct: 247 GKDGIDGLSLKYLKSLVYQFNGGPVGLNTISFAISEDKRTIEEVIEPYLLKLGFIKRTAK 306

Query: 316 GRLLMPIAWQHL 327
           GR+ +P A ++L
Sbjct: 307 GRVALPTAVEYL 318


>gi|262041977|ref|ZP_06015159.1| Holliday junction DNA helicase RuvB [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259040675|gb|EEW41764.1| Holliday junction DNA helicase RuvB [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 304

 Score =  315 bits (807), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 172/285 (60%), Positives = 215/285 (75%), Gaps = 1/285 (0%)

Query: 1   MMDREGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S + S  E+A    +RP+ L E+ GQ +  S +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRLVSADSSGFEEAADRAIRPKLLAEYVGQPQVRSQMEIFIQAAKLRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+G N R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGGNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY+I DL+ IV R A+  GL ++DE A E+A RSRGTPRIA RLLRRVRDFAEV H  
Sbjct: 181 LEFYQIPDLQHIVSRSARHMGLEMSDEGALEVARRSRGTPRIANRLLRRVRDFAEVRHDG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIET 284
           TI+ +IA  AL  L +D  GFD +D + L  +   F GGPVG  T
Sbjct: 241 TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGWTT 285


>gi|306780630|ref|ZP_07418967.1| holliday junction DNA helicase RuvB [Mycobacterium tuberculosis
           SUMu002]
 gi|308326461|gb|EFP15312.1| holliday junction DNA helicase RuvB [Mycobacterium tuberculosis
           SUMu002]
          Length = 355

 Score =  315 bits (807), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 158/334 (47%), Positives = 224/334 (67%), Gaps = 7/334 (2%)

Query: 1   MMDR-EGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M +R +  +S  ++  + DI   LRPR+L EF GQ      L++ IE AK R    DH+L
Sbjct: 1   MTERSDRNVSPALTVGEGDIDVSLRPRSLREFIGQPRVREQLQLVIEGAKNRGGTPDHIL 60

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
             GPPGLGKT+LA ++A ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++
Sbjct: 61  LSGPPGLGKTSLAMIIAAELGSSLRVTSGPALERAGDLAAMLSNLVEHDVLFIDEIHRIA 120

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
              EE+LY AMEDF++D++VG+GP A S+ + ++ FTL+ ATTR G LT PL+DRFG   
Sbjct: 121 RPAEEMLYLAMEDFRVDVVVGKGPGATSIPLEVAPFTLVGATTRSGALTGPLRDRFGFTA 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
            ++FYE  +L+ ++ R A + G+ +  +A  EIA RSRGTPRIA RLLRRVRDFAEV   
Sbjct: 181 HMDFYEPAELERVLARSAGILGIELGADAGAEIARRSRGTPRIANRLLRRVRDFAEVRAD 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             ITR++A AAL    +D++G D+LD   L+ + R+FGGGPVG+ T++  + E    +E+
Sbjct: 241 GVITRDVAKAALEVYDVDELGLDRLDRAVLSALTRSFGGGPVGVSTLAVAVGEEAATVEE 300

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           + EP++++ G + RT   R+         G+D P
Sbjct: 301 VCEPFLVRAGMVARTRAARVATAP-----GLDAP 329


>gi|33864671|ref|NP_896230.1| Holliday junction DNA helicase RuvB [Synechococcus sp. WH 8102]
 gi|44888401|sp|Q7U9W7|RUVB_SYNPX RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|33632194|emb|CAE06650.1| Holliday junction DNA helicase RuvB [Synechococcus sp. WH 8102]
          Length = 348

 Score =  315 bits (807), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 156/328 (47%), Positives = 210/328 (64%), Gaps = 4/328 (1%)

Query: 4   REGLLSRNVSQEDA---DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           RE +L      E++       LRP+ L+++ GQ E    L + ++AA  R +ALDHVL  
Sbjct: 15  REPVLDAQPLPEESSGRPDDGLRPKRLDDYIGQDELKQVLGIAVQAALGRGDALDHVLLY 74

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTT+A V+A ELGV  R TS P + +  D+  LL N++ RD+LFIDEIHRL+ +
Sbjct: 75  GPPGLGKTTMALVLAEELGVTCRITSAPALERPRDIVGLLVNVQPRDLLFIDEIHRLNRV 134

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            EE+LYPAMED +LDL VG+G +AR+  + L  FTL+ ATT+ G L++PL+DRFG+  RL
Sbjct: 135 SEELLYPAMEDRRLDLTVGKGSTARTRSLELPPFTLVGATTKAGSLSSPLRDRFGLIQRL 194

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY  EDL+ IV R A L G++++  A   IA   RGTPRIA RLLRRVRD A V   + 
Sbjct: 195 EFYGQEDLEAIVSRTADLLGVSLSAGACRRIAGCCRGTPRIANRLLRRVRDVACVQGRQN 254

Query: 241 ITREI-ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
              E     AL    +D  G D  D R L  + ++  GGPVG+ET++A L E    +E +
Sbjct: 255 QIDEGLVSQALSLHRVDHRGLDAGDRRLLAQLDQHHDGGPVGLETLAAALGEDPTTLESV 314

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHL 327
           +EP+++QQG + RTPRGR+L   A  HL
Sbjct: 315 VEPFLLQQGLLVRTPRGRMLTEAARAHL 342


>gi|78183746|ref|YP_376180.1| Holliday junction DNA helicase RuvB [Synechococcus sp. CC9902]
 gi|97190400|sp|Q3B0J1|RUVB_SYNS9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|78168040|gb|ABB25137.1| Holliday junction DNA helicase subunit RuvB [Synechococcus sp.
           CC9902]
          Length = 347

 Score =  315 bits (806), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 161/325 (49%), Positives = 209/325 (64%), Gaps = 4/325 (1%)

Query: 7   LLSRNVSQEDA---DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           L+    + E+        LRP+ L E+ GQ E    L + +EAA  R EALDHVL  GPP
Sbjct: 19  LVDPQPAPEEQVIRPEDSLRPKRLSEYIGQSELKQVLGIAVEAALGRGEALDHVLLYGPP 78

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTT+A V+A ELGVN R TS P + +  D+  LL NL+ RD+LFIDEIHRLS + EE
Sbjct: 79  GLGKTTMALVLAEELGVNCRITSAPALERPRDIVGLLVNLQPRDLLFIDEIHRLSRVAEE 138

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LYPAMED +LDL VG+G +AR+  ++L  FTL+ ATTR G L++PL+DRFG+  RL FY
Sbjct: 139 LLYPAMEDRRLDLTVGKGSTARTRTLDLPPFTLVGATTRAGSLSSPLRDRFGLIQRLEFY 198

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA-HAKTIT 242
              DL+ IV R A+L  + +T +A   IA   RGTPRIA RLLRRVRD A V     TI 
Sbjct: 199 GQTDLEAIVARTAELVSVDLTFDACARIAASCRGTPRIANRLLRRVRDVASVRQGKGTID 258

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             +   AL    +D  G D  D R L M+    GGGPVG+ET++A L E    +E ++EP
Sbjct: 259 DAMVAEALSLHRVDHRGLDASDRRLLAMLMDQHGGGPVGLETLAAALGEDPVTLETVVEP 318

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHL 327
           +++QQG + RTPRGR++   A  H+
Sbjct: 319 FLLQQGLLVRTPRGRMVTDAARSHI 343


>gi|306818759|ref|ZP_07452481.1| crossover junction ATP-dependent DNA helicase RuvB [Mobiluncus
           mulieris ATCC 35239]
 gi|307700682|ref|ZP_07637707.1| Holliday junction DNA helicase RuvB [Mobiluncus mulieris FB024-16]
 gi|304648445|gb|EFM45748.1| crossover junction ATP-dependent DNA helicase RuvB [Mobiluncus
           mulieris ATCC 35239]
 gi|307613677|gb|EFN92921.1| Holliday junction DNA helicase RuvB [Mobiluncus mulieris FB024-16]
          Length = 353

 Score =  315 bits (806), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 160/328 (48%), Positives = 219/328 (66%), Gaps = 1/328 (0%)

Query: 6   GLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
            L+       E    + LRP+TL +F GQ    + L + + AAK R +A+DHVL  GPPG
Sbjct: 13  RLVDEGAEDAERVAEAALRPKTLMDFVGQNTVKTQLNLVLRAAKERGDAVDHVLLAGPPG 72

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTLA ++A E+  + R TSGP I+ AGDLAA+L++L++ DVLFIDEIHRL+   EE+
Sbjct: 73  LGKTTLAMIIAAEMNSSLRLTSGPAISHAGDLAAILSSLQEGDVLFIDEIHRLARPAEEM 132

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LY AMEDF++D++VG+GP A S+ ++L +FTL+ ATTR GLL  PL+DRFG    +  YE
Sbjct: 133 LYLAMEDFRVDVVVGKGPGATSIPLSLPQFTLVGATTRAGLLPAPLRDRFGFTAHMEPYE 192

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            EDL  IV+R A L G  +T EAA EIA RSRGTPR+A RLLRRV DFA V   +    E
Sbjct: 193 AEDLSLIVKRSAALLGARITGEAAHEIAKRSRGTPRVANRLLRRVIDFALVHGNEECDLE 252

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
            A A L    +D+MG D+LD   L  I   F GGPVG  T++  + E ++ +E+++EP++
Sbjct: 253 AAQATLKLFEVDEMGLDRLDRDVLHAIVERFQGGPVGAGTLAVSVGEEKETVEEVVEPFL 312

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++ G + RT RGR++    + HLG+ +P
Sbjct: 313 VRVGLLARTQRGRVITAKGYTHLGLPVP 340


>gi|124021906|ref|YP_001016213.1| Holliday junction DNA helicase RuvB [Prochlorococcus marinus str.
           MIT 9303]
 gi|123962192|gb|ABM76948.1| Holliday junction DNA helicase RuvB [Prochlorococcus marinus str.
           MIT 9303]
          Length = 398

 Score =  314 bits (804), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 162/329 (49%), Positives = 219/329 (66%), Gaps = 4/329 (1%)

Query: 6   GLLSRNVSQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
            ++  +   E+A  +    LRP+ LE++ GQ E    L + ++AA  R +ALDHVL  GP
Sbjct: 67  RVVDASPLPEEASPAREDGLRPKRLEDYIGQRELKQVLGIAVKAAMGRGDALDHVLLYGP 126

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTT+A V+A ELGV  R TS P + +  D+  LL NL+ R+VLFIDEIHRL+ + E
Sbjct: 127 PGLGKTTMAMVLAEELGVKCRVTSAPALERPRDIVGLLVNLQPREVLFIDEIHRLTRVAE 186

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMED +LDL VG+G +AR+  + L  FTL+ ATTR G L++PL+DRFG+  RL F
Sbjct: 187 ELLYPAMEDRRLDLTVGKGSTARTRALELPPFTLVGATTRAGALSSPLRDRFGLIQRLEF 246

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT-I 241
           Y +EDL+ IV+R A L  L +T +A  EIA R RGTPRIA RLLRRVRD A V   ++ I
Sbjct: 247 YGLEDLQAIVERAAGLLRLQLTAQACQEIARRCRGTPRIANRLLRRVRDVASVCGGESLI 306

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
              + D AL    +D  G D  D R L ++  + GGGPVG+ET++A L E    +E ++E
Sbjct: 307 DAALVDEALTLHRVDARGLDASDRRLLDLLLESHGGGPVGLETLAAALGEDPATLEAVVE 366

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           P+++Q GF+QRTPRGR++     +HLG  
Sbjct: 367 PFLLQLGFLQRTPRGRVVTGAGRRHLGWP 395


>gi|268679041|ref|YP_003303472.1| Holliday junction DNA helicase RuvB [Sulfurospirillum deleyianum
           DSM 6946]
 gi|268617072|gb|ACZ11437.1| Holliday junction DNA helicase RuvB [Sulfurospirillum deleyianum
           DSM 6946]
          Length = 340

 Score =  314 bits (804), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 163/329 (49%), Positives = 232/329 (70%), Gaps = 2/329 (0%)

Query: 5   EGLLS-RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           E ++    VS E      LRP + EE+ GQ +   NL+VFI+AA  R+E LDH+LF GPP
Sbjct: 2   ERIVEIEKVSFESEYEKSLRPTSFEEYIGQEKIKKNLQVFIQAALKRSECLDHILFFGPP 61

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLA +V+ E+  N + T+ P+I K+GDLAA+LTNL++ D+LFIDEIHRLS  +EE
Sbjct: 62  GLGKTTLAYIVSNEMRANIKITAAPMIEKSGDLAAILTNLQEGDILFIDEIHRLSPAIEE 121

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ILYPAMEDF+LD+++G GP+A+++KI+L  FTLI ATTR G++++PL+DRFG+  RL FY
Sbjct: 122 ILYPAMEDFRLDIIIGSGPAAQTIKIDLPHFTLIGATTRAGMISSPLRDRFGMHFRLQFY 181

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
             E+L  I+ + +        ++AA E+A RSRGTPRIA RLL+R+RD+A+V     I +
Sbjct: 182 TKEELALIITKASYKLEKRCLNDAAFEMARRSRGTPRIALRLLKRIRDYADVVDETEIYK 241

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           E A   L  L ++ +GFD+LDL+YL ++ ++  G P+G+ TI+A LSE    IED+IEPY
Sbjct: 242 ERAQYGLNELGVNDLGFDELDLKYLELLLQS-KGRPLGLSTIAAALSEDEGTIEDVIEPY 300

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++   +I+RT RGR+  P  ++   +  P
Sbjct: 301 LLANSYIERTARGRIASPKTYELFRLTPP 329


>gi|150021414|ref|YP_001306768.1| Holliday junction DNA helicase RuvB [Thermosipho melanesiensis
           BI429]
 gi|172048671|sp|A6LN82|RUVB_THEM4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|149793935|gb|ABR31383.1| Holliday junction DNA helicase RuvB [Thermosipho melanesiensis
           BI429]
          Length = 313

 Score =  314 bits (804), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 156/304 (51%), Positives = 215/304 (70%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
            E+ GQ      L + I+A+K R EALDHVL VGPPGLGKTTLA +++ ELG N   TSG
Sbjct: 2   NEYIGQGNIKKRLGLAIKASKIRKEALDHVLLVGPPGLGKTTLAHIISNELGTNIHVTSG 61

Query: 88  PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSV 147
           P++ K GD+AA+LTNLE  DVLFIDEIHR++  VEEILY AMEDFQ+D+++G+GPSARS+
Sbjct: 62  PILEKQGDVAAILTNLEHGDVLFIDEIHRMNRSVEEILYTAMEDFQIDILIGKGPSARSI 121

Query: 148 KINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEA 207
           +I+L  FTL+ ATTR GLL+ PL++RFG+ + L+FY I++L  I++R A +  + +  +A
Sbjct: 122 RIDLQPFTLVGATTRSGLLSAPLRNRFGLIMELDFYSIDELSKIIERAAIVLNVEIEKDA 181

Query: 208 ACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRY 267
           A  +A RSRGTPRIA RLLRRVRD + +     I   + +  +  L IDK G D+LD + 
Sbjct: 182 AILLAKRSRGTPRIALRLLRRVRDMSTIRGKVKIDIYMVEEIMFLLGIDKEGLDELDRKI 241

Query: 268 LTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHL 327
           L  I   + GGPVG+++++A +    D+I ++ EPY++Q GFI RT RGR+    A+ HL
Sbjct: 242 LRTIIEVYNGGPVGVKSLAASVGISEDSISEVYEPYLLQSGFIARTHRGRIATKKAYNHL 301

Query: 328 GIDI 331
           GI +
Sbjct: 302 GIKV 305


>gi|187917905|ref|YP_001883468.1| Holliday junction DNA helicase RuvB [Borrelia hermsii DAH]
 gi|238689304|sp|B2S1L1|RUVB_BORHD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|119860753|gb|AAX16548.1| Holliday junction DNA helicase RuvB [Borrelia hermsii DAH]
          Length = 352

 Score =  314 bits (804), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 143/309 (46%), Positives = 202/309 (65%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           D + S LRP+ L +F GQ     NL VFI+A++ R EALDHV   GPPGLGKTTLA ++A
Sbjct: 19  DRNESELRPKFLRDFAGQSHIKENLSVFIKASRDRNEALDHVFLSGPPGLGKTTLASIIA 78

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
            E+    + TS P + K  D+  +LT L+D+ +LFIDE+HRL  ++EE+LY AMED+++D
Sbjct: 79  VEMNTTIKVTSAPALDKPKDIVGILTTLDDKSILFIDEMHRLKPVIEEMLYIAMEDYKID 138

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
            ++G+GP+AR+V++++ +FTLI ATT+ G + +PL  RFGI  R   Y  ++L  I+QR 
Sbjct: 139 WIIGQGPAARTVRMSIPKFTLIGATTKPGKVASPLYARFGIVSRFELYSEDELVKIIQRN 198

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255
           + +  +   D+AA  +A  SRGTPR+A RLLRR+RDFA+V     IT  I    L  L I
Sbjct: 199 SIILNVKFEDKAAWLLAKSSRGTPRVANRLLRRMRDFAQVGGYDLITENIVSDGLEMLKI 258

Query: 256 DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR 315
           D  G D+ D   L  +   F GGPVG+ET++  + E  D++ED  EPY+I +G I+RT R
Sbjct: 259 DHEGLDEQDRNILRSLILKFKGGPVGVETLAISVGETADSLEDFYEPYLILKGLIERTSR 318

Query: 316 GRLLMPIAW 324
           GR     A+
Sbjct: 319 GRKATDFAY 327


>gi|311772314|pdb|3PFI|A Chain A, 2.7 Angstrom Resolution Crystal Structure Of A Probable
           Holliday Junction Dna Helicase (Ruvb) From Campylobacter
           Jejuni Subsp. Jejuni Nctc 11168 In Complex With
           Adenosine-5'-Diphosphate
 gi|311772315|pdb|3PFI|B Chain B, 2.7 Angstrom Resolution Crystal Structure Of A Probable
           Holliday Junction Dna Helicase (Ruvb) From Campylobacter
           Jejuni Subsp. Jejuni Nctc 11168 In Complex With
           Adenosine-5'-Diphosphate
          Length = 338

 Score =  313 bits (803), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 156/317 (49%), Positives = 220/317 (69%), Gaps = 1/317 (0%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           ++   + LRP   + + GQ     NL VFI AAK R E LDH+LF GP GLGKTTLA ++
Sbjct: 16  DETYETSLRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANII 75

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           + E   N ++T+ P I K+GDLAA+LTNL + D+LFIDEIHRLS  +EE+LYPA ED++L
Sbjct: 76  SYEXSANIKTTAAPXIEKSGDLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAXEDYRL 135

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D+++G GP+A+++KI+L +FTLI ATTR G L+NPL+DRFG   RL FY+  +L  I+Q+
Sbjct: 136 DIIIGSGPAAQTIKIDLPKFTLIGATTRAGXLSNPLRDRFGXQFRLEFYKDSELALILQK 195

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A        ++AA EIA RSR TPRIA RLL+RVRDFA+V   + IT + A+ AL  L 
Sbjct: 196 AALKLNKTCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIITEKRANEALNSLG 255

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           ++++GFD  DLRYL ++       P+G+ +I+A LSE  + IED+IEPY++  G+I+RT 
Sbjct: 256 VNELGFDAXDLRYLELL-TAAKQKPIGLASIAAALSEDENTIEDVIEPYLLANGYIERTA 314

Query: 315 RGRLLMPIAWQHLGIDI 331
           +GR+    ++  L ++ 
Sbjct: 315 KGRIASAKSYSALKLNY 331


>gi|206603018|gb|EDZ39498.1| Holliday junction DNA helicase (RuvB) [Leptospirillum sp. Group II
           '5-way CG']
          Length = 332

 Score =  313 bits (803), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 153/323 (47%), Positives = 215/323 (66%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           + + L+     +E  D +LLRPRT + + GQ +   +LKV I+AA  R + LDH+L  GP
Sbjct: 5   EADLLIPEEFPEEIPDTNLLRPRTFDHYVGQKDVIDSLKVAIQAALLREDTLDHILLHGP 64

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA +VAR +GV+F ++SGP + K GDL  +LT L    +LFIDEIHRL   VE
Sbjct: 65  PGLGKTTLAALVARAMGVSFLASSGPALEKGGDLVGILTRLAPGTLLFIDEIHRLPRPVE 124

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILY AMEDF +D++   G +AR+ +  L  FTL+ ATTR GLL+ PL+DRFGI   L+F
Sbjct: 125 EILYSAMEDFSIDVVFDRGAAARTFRHRLPPFTLVGATTRAGLLSAPLRDRFGIQRDLDF 184

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y+  +L  I++R A + G+ +  E + EI  RSRGTPRIA RLL+RVRDF++V     I+
Sbjct: 185 YQPSELARILERSAGILGIGIDPEGSLEIGRRSRGTPRIANRLLKRVRDFSQVNGHPVIS 244

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           R++A  AL    ID  G +++D R++  I   + GGPVGIE ++A L    D + D++EP
Sbjct: 245 RDVAHQALRMEGIDDRGLNRIDRRFIETIRVVYNGGPVGIEAMAATLQMDPDTLIDVVEP 304

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQ 325
           Y++++G++ RTP GR L    W+
Sbjct: 305 YLLKEGYLARTPAGRRLTASGWE 327


>gi|194335811|ref|YP_002017605.1| Holliday junction DNA helicase RuvB [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|238693394|sp|B4SDZ7|RUVB_PELPB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|194308288|gb|ACF42988.1| Holliday junction DNA helicase RuvB [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 344

 Score =  313 bits (803), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 165/322 (51%), Positives = 218/322 (67%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M  E L +   + E      +RP  ++ F GQ     NL+VFI AAK R EALDHVL  G
Sbjct: 1   MRIELLNTPPDASETRIEEQIRPLRMDAFAGQQRLTDNLRVFISAAKMRGEALDHVLLSG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+G + +STSGP++ KAG+LA LLT L+  DVLFIDEIHR+   V
Sbjct: 61  PPGLGKTTLAYIIASEMGSSIKSTSGPLLDKAGNLAGLLTGLQKGDVLFIDEIHRMPPTV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE LY AMEDF++D+M+  GPSAR+V++ +  FTL+ ATTR GLLT+PL+ RFGI  R +
Sbjct: 121 EEYLYSAMEDFRIDIMLDSGPSARAVQLRIEPFTLVGATTRSGLLTSPLRARFGINSRFD 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y  E L+ I++R + + G+ +  EAA EIA RSRGTPRIA RLLRR RDFA+V     I
Sbjct: 181 YYAPELLEGIIRRASTILGIGIDAEAASEIAGRSRGTPRIANRLLRRARDFAQVDGESFI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           +R IA   L  L ID+ G D +D + +  I   F GGPVGI +++  + E +D IE++ E
Sbjct: 241 SRSIAMKTLDCLEIDEEGLDDMDKKIMETIVNKFNGGPVGIASLAVSVGEEQDTIEEVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIA 323
           PY+IQ G++ RT RGR+    A
Sbjct: 301 PYLIQAGYLTRTTRGRVATRQA 322


>gi|283954985|ref|ZP_06372492.1| LOW QUALITY PROTEIN: Holliday junction DNA helicase RuvB
           [Campylobacter jejuni subsp. jejuni 414]
 gi|283793483|gb|EFC32245.1| LOW QUALITY PROTEIN: Holliday junction DNA helicase RuvB
           [Campylobacter jejuni subsp. jejuni 414]
          Length = 335

 Score =  313 bits (802), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 158/330 (47%), Positives = 231/330 (70%), Gaps = 2/330 (0%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MDR   + +  S ++   + LRP     + GQ     NL VFI AAK R E LDH+LF G
Sbjct: 1   MDRIVEIEK-YSFDETYETSLRPSNFNGYIGQENIKKNLNVFIAAAKKRNECLDHILFSG 59

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           P GLGKTTLA +++ E+G N ++T+ P+I K+GDLAA+LTNL + D+LFIDEIHRLS  +
Sbjct: 60  PAGLGKTTLANIISYEMGANIKTTAAPMIEKSGDLAAILTNLSEGDILFIDEIHRLSPAI 119

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMED++LD+++G GP+A+++KI+L +FTLI ATTR G+L+NPL+DRFG+  RL 
Sbjct: 120 EEVLYSAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLE 179

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY+  +L  I+Q+ A        ++AA EIA RSR TPRIA RLL+RVRDFA+V+  + I
Sbjct: 180 FYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVSDEEII 239

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T +  + AL  L ++++GFD +DL+YL ++       P+G+ +I+A LSE  + +ED+IE
Sbjct: 240 TEKRTNEALNSLGVNELGFDAMDLKYLELL-TAAKQRPIGLASIAAALSEDENTVEDVIE 298

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           PY++  G+I+RT +GR+    ++  L ++ 
Sbjct: 299 PYLLANGYIERTAKGRIASTKSYNALKLNY 328


>gi|217967993|ref|YP_002353499.1| Holliday junction DNA helicase RuvB [Dictyoglomus turgidum DSM
           6724]
 gi|217337092|gb|ACK42885.1| Holliday junction DNA helicase RuvB [Dictyoglomus turgidum DSM
           6724]
          Length = 334

 Score =  313 bits (802), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 145/316 (45%), Positives = 210/316 (66%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           V +E A  ++LRP+ L +F GQ      L + I AAK R EA+DH+LFVGPPG+GKTTLA
Sbjct: 12  VQREPALDNVLRPKNLSDFIGQERIKDRLALIINAAKKREEAVDHILFVGPPGVGKTTLA 71

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            ++A E     +  S P + K+GDL ALLT++E+R ++FIDEIHRL+  +EEILY A+ED
Sbjct: 72  LIIAEEQNAPIKMVSAPSLQKSGDLIALLTSVEERGIIFIDEIHRLNPSLEEILYSALED 131

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
             + ++ G+GP  + + I L  FTL+ ATTR  LL++PL+DRFG    L+FY  E++  I
Sbjct: 132 RSVSIVTGKGPGGKVLSIKLPPFTLVGATTRPALLSSPLRDRFGFIANLDFYTHEEMVKI 191

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           ++R  K+ GL +  E+  EIA RSRG PRIA R+L+R++D+ ++   K I  E     L 
Sbjct: 192 IERSQKILGLNLPYESIIEIAKRSRGVPRIANRILKRIKDYIDLKEEKNINLEETKRVLE 251

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            + ID+ G D+LD + L  +   F GGPVG++ ++A L+E  D IE + EPY+++ GFIQ
Sbjct: 252 LIGIDEKGLDELDRKILFALRDKFSGGPVGLKALAAVLNESPDTIESIYEPYLLRIGFIQ 311

Query: 312 RTPRGRLLMPIAWQHL 327
           RT RGR++ P+   H+
Sbjct: 312 RTSRGRIITPLGLAHI 327


>gi|251771978|gb|EES52550.1| Holliday junction DNA helicase (RuvB) [Leptospirillum
           ferrodiazotrophum]
          Length = 346

 Score =  313 bits (802), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 157/306 (51%), Positives = 207/306 (67%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRT +E+ GQ      L++ IEAA AR E LDH+L  GPPGLGKTTLA ++A  + V 
Sbjct: 30  IRPRTFDEYVGQEAVIEGLQISIEAATARGECLDHILLHGPPGLGKTTLASLIAGAMDVP 89

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
           F +TSGPV+ K GDL  +L+ L  R VLFIDEIHRL   VEEILY AMEDF +D++   G
Sbjct: 90  FLTTSGPVLEKGGDLVGILSRLAPRTVLFIDEIHRLPRAVEEILYGAMEDFAIDVIFDRG 149

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           PSAR+ +  L  FTL+ ATTR GLL+ PL+DRFGI   L+FY  ++L  I+ R + + G 
Sbjct: 150 PSARTFRHQLPPFTLVGATTRAGLLSAPLRDRFGIFQDLDFYRPDELVRILLRSSAVLGF 209

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
           ++ +EAA EI  RSRGTPRIA RLLRRVRDFA+V     +TRE+   AL    ID +G +
Sbjct: 210 SLPEEAALEIGCRSRGTPRIANRLLRRVRDFAQVRARGIVTRELVVEALRIEGIDDLGLN 269

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           ++D + L+ I   +GGGPVG+E ++A L    D I D++EPY++++G I RTP GR L  
Sbjct: 270 RVDRKVLSTIGTVYGGGPVGVEALAATLQIEVDTIIDVVEPYLLKEGLIARTPSGRRLTE 329

Query: 322 IAWQHL 327
              + L
Sbjct: 330 YGQKRL 335


>gi|189346153|ref|YP_001942682.1| Holliday junction DNA helicase RuvB [Chlorobium limicola DSM 245]
 gi|238692201|sp|B3EH23|RUVB_CHLL2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|189340300|gb|ACD89703.1| Holliday junction DNA helicase RuvB [Chlorobium limicola DSM 245]
          Length = 348

 Score =  313 bits (801), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 166/322 (51%), Positives = 219/322 (68%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M  E L +   + E      +RP  + +F GQ     NL+VFI AAK R +ALDHVL  G
Sbjct: 1   MRIELLNTPADALETRFEEQIRPIRMLDFAGQQRLTDNLRVFISAAKMRGDALDHVLLSG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+G + ++TSGP++ KAG+LA LLT L+  DVLFIDEIHR+   V
Sbjct: 61  PPGLGKTTLAHIIAAEMGSSIKATSGPLLDKAGNLAGLLTGLQKGDVLFIDEIHRMPPAV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE LY AMEDF++D+M+  GPSAR+V++ +  FTL+ ATTR GLLT+PL+ RFGI  R +
Sbjct: 121 EEYLYSAMEDFRIDIMLDSGPSARAVQLRIEPFTLVGATTRSGLLTSPLRARFGINSRFD 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +Y  + L+ I+ R + + G+ V  +AA EIA RSRGTPRIA RLLRR RDFA+VA A  I
Sbjct: 181 YYSADLLEKIIIRASGILGIGVDQDAAAEIAGRSRGTPRIANRLLRRARDFAQVADAPLI 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           TR IA   L  L ID+ G D +D + +  I   F GGPVG  +++  + E +D IE++ E
Sbjct: 241 TRSIAMTTLDCLEIDEEGLDDMDKKIMDTIVNKFSGGPVGAASLAVSVGEEQDTIEEVYE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIA 323
           PY+IQ G+I RTPRGR+    A
Sbjct: 301 PYLIQAGYIARTPRGRVATRRA 322


>gi|171769890|sp|A2C638|RUVB_PROM3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
          Length = 352

 Score =  313 bits (801), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 162/329 (49%), Positives = 219/329 (66%), Gaps = 4/329 (1%)

Query: 6   GLLSRNVSQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
            ++  +   E+A  +    LRP+ LE++ GQ E    L + ++AA  R +ALDHVL  GP
Sbjct: 21  RVVDASPLPEEASPAREDGLRPKRLEDYIGQRELKQVLGIAVKAAMGRGDALDHVLLYGP 80

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTT+A V+A ELGV  R TS P + +  D+  LL NL+ R+VLFIDEIHRL+ + E
Sbjct: 81  PGLGKTTMAMVLAEELGVKCRVTSAPALERPRDIVGLLVNLQPREVLFIDEIHRLTRVAE 140

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMED +LDL VG+G +AR+  + L  FTL+ ATTR G L++PL+DRFG+  RL F
Sbjct: 141 ELLYPAMEDRRLDLTVGKGSTARTRALELPPFTLVGATTRAGALSSPLRDRFGLIQRLEF 200

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT-I 241
           Y +EDL+ IV+R A L  L +T +A  EIA R RGTPRIA RLLRRVRD A V   ++ I
Sbjct: 201 YGLEDLQAIVERAAGLLRLQLTAQACQEIARRCRGTPRIANRLLRRVRDVASVCGGESLI 260

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
              + D AL    +D  G D  D R L ++  + GGGPVG+ET++A L E    +E ++E
Sbjct: 261 DAALVDEALTLHRVDARGLDASDRRLLDLLLESHGGGPVGLETLAAALGEDPATLEAVVE 320

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           P+++Q GF+QRTPRGR++     +HLG  
Sbjct: 321 PFLLQLGFLQRTPRGRVVTGAGRRHLGWP 349


>gi|257068562|ref|YP_003154817.1| Holliday junction DNA helicase subunit RuvB [Brachybacterium
           faecium DSM 4810]
 gi|256559380|gb|ACU85227.1| Holliday junction DNA helicase subunit RuvB [Brachybacterium
           faecium DSM 4810]
          Length = 353

 Score =  312 bits (800), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 155/324 (47%), Positives = 215/324 (66%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
             V  E    + LRPR L+EF GQ      L + ++AA AR  A +H+L  GPPGLGKTT
Sbjct: 18  EAVPPERTAEAALRPRRLDEFVGQQVVRDQLSLVLDAASARGRAPEHMLLSGPPGLGKTT 77

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           LA ++A EL V  R TSGP I  AGDLAA+L++L++ +VLFIDEIHRL+   EE+LY AM
Sbjct: 78  LAMIIAAELSVPLRITSGPAIQHAGDLAAILSSLDEGEVLFIDEIHRLARPAEEMLYIAM 137

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           EDF++D++VG+G  A S+ ++L  FT + ATTR GLL  PL+DRFG    L+FY  ++L+
Sbjct: 138 EDFRVDVVVGKGVGATSIPLDLPPFTAVGATTRAGLLPAPLRDRFGFIGHLDFYGAQELR 197

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            +V R A    + + + AA EI+ RSRGTPRIA RLLRRVRD+A+V  +  +    A  A
Sbjct: 198 EVVHRSAARLEVELDEPAAVEISTRSRGTPRIANRLLRRVRDWAQVRGSGRLDLAAAKEA 257

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           L    +D+ G D+LD   L+ +   F GGPVG+ T++  + E  + +E ++EPY++++GF
Sbjct: 258 LRVYEVDERGLDRLDRAVLSALCGRFSGGPVGLSTLAVAVGEETETVETMVEPYLVREGF 317

Query: 310 IQRTPRGRLLMPIAWQHLGIDIPH 333
           + RTPRGR   P AW HLG++ P 
Sbjct: 318 LLRTPRGRAAAPAAWTHLGLEPPE 341


>gi|289523149|ref|ZP_06440003.1| holliday junction DNA helicase RuvB [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
 gi|289503692|gb|EFD24856.1| holliday junction DNA helicase RuvB [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
          Length = 345

 Score =  312 bits (800), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 163/326 (50%), Positives = 223/326 (68%), Gaps = 1/326 (0%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            L+S      + D+  +RP+ L EF GQ +    L +FI+AAK+R E LDH LF GPPGL
Sbjct: 7   RLMSEQPLALEEDV-FIRPKRLCEFIGQAKVIDKLSMFIKAAKSRDEPLDHTLFCGPPGL 65

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLA VVA E+G   ++T+GP I++ GDLAA+L++L+ +DVLFIDEIHRLS  VEE+L
Sbjct: 66  GKTTLAGVVAHEMGGELKTTTGPAISRTGDLAAILSSLKAKDVLFIDEIHRLSPQVEEVL 125

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           Y AMEDF L++++G+GP ARS+K+ L +FTLI ATT+  LL+ PL+ RFGI  +L +Y  
Sbjct: 126 YSAMEDFFLNIIIGKGPMARSIKLTLPKFTLIGATTKPTLLSAPLRGRFGIIEQLEYYST 185

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           ++L  I+ RGA +  + + +EAA EIA RSRGTPRIA RLL+RVRD AE      +T  I
Sbjct: 186 DELAEILVRGASVLEVNLDEEAAMEIAKRSRGTPRIALRLLKRVRDIAEAKKESKVTVAI 245

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           A  AL  L ID  G D  + + L +I   F GGPVG+ T++A +SE    +E++ EPY++
Sbjct: 246 AKKALDLLGIDDDGIDDQERKLLDVIVNLFDGGPVGLSTLAAAMSEEERTVEEIYEPYLL 305

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDI 331
           + G I+RT  GR+    A++ LGI  
Sbjct: 306 RNGLIERTRGGRMATRKAYERLGIPY 331


>gi|219685282|ref|ZP_03540101.1| holliday junction DNA helicase RuvB [Borrelia garinii Far04]
 gi|219673055|gb|EED30075.1| holliday junction DNA helicase RuvB [Borrelia garinii Far04]
          Length = 347

 Score =  312 bits (799), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 148/336 (44%), Positives = 210/336 (62%), Gaps = 4/336 (1%)

Query: 2   MDREGLLSRNVSQE----DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M  E  ++   S E    D   + LRP+  E+F GQV     L +FI A+K R EALDHV
Sbjct: 1   MKDENSINFLSSNENYLYDKSENELRPKVFEDFKGQVNVKETLSIFIRASKERGEALDHV 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
              GPPGLGKTTLA ++A E+  + + TS P   K  D+  +LT L+++ VLFIDEIHRL
Sbjct: 61  FLSGPPGLGKTTLASIIAFEMNASIKITSAPAFDKPKDIIGILTGLDEKSVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             I+EE+L  AMED++LD ++G+G +AR+V++ L +FTLI ATT+ G +T+PL  RFGI 
Sbjct: 121 RPIIEEMLCIAMEDYELDWVIGQGANARTVRMPLPKFTLIGATTKPGKVTSPLYARFGIT 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            R   Y   +L  I++R + +  + + ++AA  +A  SRGTPRIA RLLRR+RD A+V  
Sbjct: 181 ARFELYSEIELVEIIKRNSVILNIEIEEDAAFLLARSSRGTPRIANRLLRRIRDIAQVTG 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
           +  +T +I    L  L ID  G D+ D   L  +   F GGPVG++T++  + E  D++E
Sbjct: 241 SLVVTSDIVSIGLEMLRIDGEGLDEQDRNILRSLILKFNGGPVGVDTLAISVGETADSLE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           D  EPY+I +GFI RT RGR     A+ HL +++  
Sbjct: 301 DFYEPYLIMKGFINRTHRGRKATEFAYLHLNLEMKE 336


>gi|168333337|ref|ZP_02691621.1| Holliday junction DNA helicase RuvB [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 328

 Score =  312 bits (799), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 152/319 (47%), Positives = 216/319 (67%), Gaps = 2/319 (0%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            +LS  +  ED+  + +RP +L E+ GQ  A  +L++FI+AAK R E+LDHVL  GPPGL
Sbjct: 4   RILSAELQLEDS-ETTIRPVSLAEYIGQEAAKESLEIFIKAAKRRKESLDHVLLYGPPGL 62

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           GKTTLA V++ E+   F+ TSGP I K GD+AA+L NL+  D+LFIDEIHR+   VEE+L
Sbjct: 63  GKTTLAGVISNEMATGFKVTSGPAIEKPGDIAAILNNLKSGDILFIDEIHRMPRFVEEVL 122

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           Y AMEDF +D++VG+G  A+S++++L +FTLI ATT+ GLL++PL+  FGI  RL +Y +
Sbjct: 123 YSAMEDFYIDILVGKGEMAKSIRLDLPKFTLIGATTKAGLLSSPLRXXFGIIQRLEYYTL 182

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK-TITRE 244
           ++L  I+ R A +    +   AA EIA  +RGTPR+A R L+RVRD  E+ + K  I   
Sbjct: 183 DELTAIIMRTAAILNTPIEIVAAMEIAKCARGTPRLANRFLKRVRDIVEIKYDKLKIGDA 242

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
               AL  L +D+ G D+LD + L  I   F GGPVG+  ++A L+E  + +ED+ EPY+
Sbjct: 243 ECVMALELLGLDEYGLDELDRKILATIKNTFDGGPVGLSALAATLAEEVETLEDVYEPYL 302

Query: 305 IQQGFIQRTPRGRLLMPIA 323
           +Q+G I+RT  GR+L   A
Sbjct: 303 LQKGLIKRTRSGRMLTEAA 321


>gi|23335123|ref|ZP_00120361.1| COG2255: Holliday junction resolvasome, helicase subunit
           [Bifidobacterium longum DJO10A]
 gi|189439316|ref|YP_001954397.1| Holliday junction DNA helicase RuvB [Bifidobacterium longum DJO10A]
 gi|238692057|sp|B3DRY0|RUVB_BIFLD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|189427751|gb|ACD97899.1| Holliday junction resolvasome helicase subunit [Bifidobacterium
           longum DJO10A]
          Length = 348

 Score =  312 bits (799), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 150/315 (47%), Positives = 210/315 (66%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           S+ +  E      LRP  L  F GQ    + L++F++AA+ R    DH+L  GPPGLGKT
Sbjct: 24  SQPIGNEPVSDEELRPHVLGGFIGQPRLKAQLQLFLDAARKRDVPPDHILLAGPPGLGKT 83

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           TLA +VA EL V  R TSGP +  AGDLA++L++L+  +VLFIDEIHRL    EE+LY A
Sbjct: 84  TLAMIVANELEVPIRVTSGPAVQHAGDLASILSSLDVGEVLFIDEIHRLPRAAEELLYIA 143

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           MEDF++D+MVG+GP A S+ + L RFT+I ATTR G+L +PL+ RFG    L+FY  E+L
Sbjct: 144 MEDFRVDVMVGKGPGASSIPLTLPRFTVIGATTREGMLPSPLRARFGFTAHLDFYPHEEL 203

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           + +++R A + G+ +   +A E+A+RSRGTPRIA RLLRRVRD+A V     +  +    
Sbjct: 204 EKLIERSANVLGVNLDTGSAHELALRSRGTPRIANRLLRRVRDWAIVHDLIVVRPDDVKE 263

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL    ID  G D+LD+  L  I RNF GGPVG+  ++A + E  + +E + EPY++++G
Sbjct: 264 ALALYQIDSEGLDRLDIAVLNAIVRNFNGGPVGLNNLAAMVGEESETVETVCEPYLVREG 323

Query: 309 FIQRTPRGRLLMPIA 323
           F+ RTP+GR+   +A
Sbjct: 324 FMIRTPKGRVATELA 338


>gi|219684815|ref|ZP_03539757.1| holliday junction DNA helicase RuvB [Borrelia garinii PBr]
 gi|219671760|gb|EED28815.1| holliday junction DNA helicase RuvB [Borrelia garinii PBr]
          Length = 347

 Score =  312 bits (799), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 148/336 (44%), Positives = 210/336 (62%), Gaps = 4/336 (1%)

Query: 2   MDREGLLSRNVSQE----DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M  E  ++   S E    D   + LRP+  E+F GQV     L +FI A+K R EALDHV
Sbjct: 1   MKDENSINFLSSNENYLYDKSENELRPKVFEDFKGQVNVKETLSIFIRASKERGEALDHV 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
              GPPGLGKTTLA ++A E+  + + TS P   K  D+  +LT L+++ VLFIDEIHRL
Sbjct: 61  FLSGPPGLGKTTLASIIAFEMNASIKITSAPAFDKPKDIIGILTGLDEKSVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             I+EE+L  AMED++LD ++G+G +AR+V++ L +FTLI ATT+ G +T+PL  RFGI 
Sbjct: 121 RPIIEEMLCIAMEDYELDWVIGQGSNARTVRMPLPKFTLIGATTKPGKVTSPLYARFGIT 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            R   Y   +L  I++R + +  + + ++AA  +A  SRGTPRIA RLLRR+RD A+V  
Sbjct: 181 ARFELYSEIELVEIIKRNSIILNIEIEEDAAFLLARSSRGTPRIANRLLRRIRDIAQVTG 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
           +  +T +I    L  L ID  G D+ D   L  +   F GGPVG++T++  + E  D++E
Sbjct: 241 SLVVTSDIVSIGLEMLRIDGEGLDEQDRNILRSLILKFNGGPVGVDTLAISVGETADSLE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           D  EPY+I +GFI RT RGR     A+ HL +++  
Sbjct: 301 DFYEPYLIMKGFINRTHRGRKATEFAYLHLNLEMKE 336


>gi|225552200|ref|ZP_03773140.1| holliday junction DNA helicase RuvB [Borrelia sp. SV1]
 gi|225371198|gb|EEH00628.1| holliday junction DNA helicase RuvB [Borrelia sp. SV1]
          Length = 347

 Score =  312 bits (798), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 150/336 (44%), Positives = 210/336 (62%), Gaps = 4/336 (1%)

Query: 2   MDREGLLSRNVSQE----DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M  E  +S   S E    D   + LRP+  E+F GQV     L +FI A+K R EALDHV
Sbjct: 1   MKDENSISFLSSNENYLYDKSENELRPKVFEDFKGQVNVKETLSIFIRASKERDEALDHV 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
              GPPGLGKTTLA ++A E+  + + TS P   K  D+  +LT L+++ VLFIDEIHRL
Sbjct: 61  FLSGPPGLGKTTLASIIAFEMNASIKITSAPAFDKPKDIIGILTGLDEKSVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             I+EE+L  AMED++LD ++G+G +AR+V++ L +FTLI ATT+ G +T+PL  RFGI 
Sbjct: 121 RPIIEEMLCIAMEDYELDWVIGQGANARTVRMPLPKFTLIGATTKPGKVTSPLYSRFGIT 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            R   Y   +L  I++R + +  + + ++AA  +A  SRGTPRIA RLLRR+RD A+V  
Sbjct: 181 ARFELYSEIELVEIIKRNSLILNIEIEEDAAFLLARSSRGTPRIANRLLRRIRDIAQVTG 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
           +  IT +I    L  L ID  G D+ D   L  +   F GGPVG++T++  + E  D++E
Sbjct: 241 SLVITSDIVSIGLEMLRIDGEGLDEQDRNILRSLILKFNGGPVGVDTLAISVGETADSLE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           D  EPY+I +GFI RT RGR     A+ HL +++  
Sbjct: 301 DFYEPYLIMKGFISRTHRGRKATEFAYLHLNLEMKE 336


>gi|148241223|ref|YP_001226380.1| Holliday junction DNA helicase RuvB [Synechococcus sp. RCC307]
 gi|166231565|sp|A5GQ68|RUVB_SYNR3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|147849533|emb|CAK27027.1| Holliday junction DNA helicase [Synechococcus sp. RCC307]
          Length = 344

 Score =  311 bits (797), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 159/325 (48%), Positives = 214/325 (65%), Gaps = 3/325 (0%)

Query: 6   GLLSRNVSQEDAD---ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
            L++   +  + D      LRPR L ++ GQ E    L + +EA + R +ALDHVL  GP
Sbjct: 17  RLVAPEATAAEGDGGRDEGLRPRRLADYIGQSELKQVLGIAVEATRLRNDALDHVLLYGP 76

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTT+A V+A ELGV+ R  S P + +  D+  LL NL+ R++LFIDEIHRL+ + E
Sbjct: 77  PGLGKTTMALVLAEELGVSCRIASAPALERPRDIVGLLMNLQPRELLFIDEIHRLNRVAE 136

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMEDF+LDL VG GP+AR+  + L  FTL+ ATT+ G L++PL+DRFG+  RL F
Sbjct: 137 ELLYPAMEDFRLDLTVGAGPAARTRSLELPPFTLVGATTKAGSLSSPLRDRFGLIQRLEF 196

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y   DL+ IV R A+L  L +  EAA EIA R RGTPRIA RLLRRVRDFA V     + 
Sbjct: 197 YSCSDLEAIVSRSAQLLQLELAAEAAAEIARRCRGTPRIANRLLRRVRDFASVRGIAAVG 256

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             +   AL    +D  G D  D R L+++  ++GGGP G++T++A L E  D +E ++EP
Sbjct: 257 APVVVEALAMHRVDGRGLDPSDRRLLSLLETSYGGGPAGLDTLAAALGEDPDTLEAVVEP 316

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHL 327
           +++Q GF+QRTPRGR+L      HL
Sbjct: 317 FLLQLGFLQRTPRGRVLTDAGRAHL 341


>gi|33862429|ref|NP_893989.1| Holliday junction DNA helicase RuvB [Prochlorococcus marinus str.
           MIT 9313]
 gi|44888416|sp|Q7V910|RUVB_PROMM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|33640542|emb|CAE20331.1| Holliday junction DNA helicase RuvB [Prochlorococcus marinus str.
           MIT 9313]
          Length = 352

 Score =  311 bits (797), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 163/329 (49%), Positives = 219/329 (66%), Gaps = 4/329 (1%)

Query: 6   GLLSRNVSQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
            ++  +   E+A  +    LRPR LE++ GQ E    L + ++AA  R +ALDHVL  GP
Sbjct: 21  RVVDASPLPEEASPAREDGLRPRRLEDYIGQRELKQVLAIAVKAAMGRGDALDHVLLYGP 80

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTT+A V+A ELGV  R TS P + +  D+  LL NL+ R+VLFIDEIHRL+ + E
Sbjct: 81  PGLGKTTMAMVLAEELGVKCRVTSAPALERPRDIVGLLVNLQPREVLFIDEIHRLTRVAE 140

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMED +LDL VG+G +AR+  + L  FTL+ ATTR G L++PL+DRFG+  RL F
Sbjct: 141 ELLYPAMEDRRLDLTVGKGSTARTRALELPPFTLVGATTRAGALSSPLRDRFGLIQRLEF 200

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT-I 241
           Y +EDL+ IV+R A L  L +T +A  EIA R RGTPRIA RLLRRVRD A V   ++ I
Sbjct: 201 YGLEDLQAIVERAAGLLRLQLTAQACQEIARRCRGTPRIANRLLRRVRDVASVCGGESLI 260

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
              + D AL    +D  G D  D R L ++  + GGGPVG+ET++A L E    +E ++E
Sbjct: 261 DAALVDEALTLHRVDARGLDASDRRLLDLLLESHGGGPVGLETLAAALGEDPATLEAVVE 320

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           P+++Q GF+QRTPRGR++     +HLG  
Sbjct: 321 PFLLQLGFLQRTPRGRVVTGAGRRHLGWP 349


>gi|51598285|ref|YP_072473.1| Holliday junction DNA helicase RuvB [Borrelia garinii PBi]
 gi|68715417|sp|Q662Z0|RUVB_BORGA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|51572856|gb|AAU06881.1| Holliday junction DNA helicase [Borrelia garinii PBi]
          Length = 347

 Score =  311 bits (797), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 149/336 (44%), Positives = 211/336 (62%), Gaps = 3/336 (0%)

Query: 1   MMDREGL--LSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M D   +  LS N S   D   + LRP+  E+F GQV     L +FI A+K R EALDHV
Sbjct: 1   MKDENSINFLSSNESYLYDKSENELRPKVFEDFKGQVNVKETLSIFIRASKERGEALDHV 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
              GPPGLGKTTLA ++A E+  + + TS P   K  D+  +LT L+++ +LFIDEIHRL
Sbjct: 61  FLSGPPGLGKTTLASIIAFEMNASIKITSAPAFDKPKDIIGILTGLDEKSILFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             I+EE+L  AMED++LD ++G+G +AR+V++ L +FTLI ATT+ G +T+PL  RFGI 
Sbjct: 121 RPIIEEMLCIAMEDYELDWVIGQGANARTVRMPLPKFTLIGATTKPGKVTSPLYARFGIT 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            R   Y   +L  I++R + +  + + ++AA  +A  SRGTPRIA RLLRR+RD A+V  
Sbjct: 181 ARFELYSEIELVEIIKRNSIILNIEIEEDAAFLLARSSRGTPRIANRLLRRIRDIAQVTG 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
           +  +T +I    L  L ID  G D+ D   L  +   F GGPVG++T++  + E  D++E
Sbjct: 241 SLVVTSDIVSIGLEMLRIDGEGLDEQDRNILRSLILKFNGGPVGVDTLAISVGETADSLE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           D  EPY+I +GFI RT RGR     A+ HL +++  
Sbjct: 301 DFYEPYLIMKGFINRTHRGRKATEFAYLHLNLEMKE 336


>gi|224534929|ref|ZP_03675498.1| holliday junction DNA helicase RuvB [Borrelia spielmanii A14S]
 gi|224513869|gb|EEF84194.1| holliday junction DNA helicase RuvB [Borrelia spielmanii A14S]
          Length = 347

 Score =  311 bits (796), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 148/336 (44%), Positives = 209/336 (62%), Gaps = 4/336 (1%)

Query: 2   MDREGLLSRNVSQE----DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M  E  +S   S E    D   + LRP+  E+F GQ      L +FI A+K R EALDHV
Sbjct: 1   MKDENSISFLSSNENYLYDKSENELRPKVFEDFKGQANVKETLSIFIRASKERDEALDHV 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
              GPPGLGKTTLA ++A E+  + + TS P   K  D+  +LT L+++ VLFIDEIHRL
Sbjct: 61  FLSGPPGLGKTTLASIIAFEMNASIKITSAPAFDKPKDIIGILTGLDEKSVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             I+EE+L  AMED++LD ++G+G +AR+V++ L +FTLI ATT+ G +T+PL  RFGI 
Sbjct: 121 RPIIEEMLCIAMEDYELDWVIGQGANARTVRMPLPKFTLIGATTKPGKVTSPLYARFGIT 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            R   Y   +L  I++R + +  + + ++AA  +A  SRGTPRIA RLLRR+RD A+V  
Sbjct: 181 ARFELYSEIELVEIIKRNSIILNIEIEEDAAFLLARSSRGTPRIANRLLRRIRDIAQVTG 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
           +  +T +I    L  L ID  G D+ D   L  +   F GGPVG++T++  + E  D++E
Sbjct: 241 SLVVTSDIVAIGLEMLRIDGEGLDEQDRNILRSLILKFNGGPVGVDTLAISVGETADSLE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           D  EPY+I +GFI RT RGR     A+ HL +++  
Sbjct: 301 DFYEPYLIMKGFISRTHRGRKATEFAYLHLNLEMKE 336


>gi|124516218|gb|EAY57726.1| Holliday junction DNA helicase (RuvB) [Leptospirillum rubarum]
          Length = 332

 Score =  310 bits (795), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 153/323 (47%), Positives = 213/323 (65%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           D + L      +E  D +LLRPRT + + GQ +   +LKV I+AA  R + LDH+L  GP
Sbjct: 5   DADLLTPEEFPEEIPDANLLRPRTFDHYVGQKDVIDSLKVAIQAALLREDTLDHILLHGP 64

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA +VAR +GV+F ++SGP + K GDL  +LT L    +LFIDEIHRL   VE
Sbjct: 65  PGLGKTTLAALVARAMGVSFLASSGPALEKGGDLVGILTRLAPGTLLFIDEIHRLPRAVE 124

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           EILY AMEDF +D++   G +AR+ +  +  FTL+ ATTR GLL+ PL+DRFGI   L+F
Sbjct: 125 EILYSAMEDFAIDVVFDRGAAARTFRHRIPPFTLVGATTRAGLLSAPLRDRFGIQRDLDF 184

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y+  +L  I++R A + G+ +  E + EI  RSRGTPRIA RLL+RVRDF++V     I+
Sbjct: 185 YQPPELARILERSAGILGIGIDPEGSLEIGRRSRGTPRIANRLLKRVRDFSQVHGHPVIS 244

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           R +A  AL    ID  G +++D R++  I   + GGPVGIE ++A L    D + D++EP
Sbjct: 245 RAVAHQALRMEGIDDRGLNRIDRRFIETIRVVYNGGPVGIEAMAATLQMDPDTLIDVVEP 304

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQ 325
           Y++++G++ RTP GR L    W+
Sbjct: 305 YLLKEGYLARTPAGRRLTASGWE 327


>gi|15594368|ref|NP_212156.1| Holliday junction DNA helicase RuvB [Borrelia burgdorferi B31]
 gi|218249701|ref|YP_002374556.1| holliday junction DNA helicase RuvB [Borrelia burgdorferi ZS7]
 gi|221217414|ref|ZP_03588885.1| holliday junction DNA helicase RuvB [Borrelia burgdorferi 72a]
 gi|223889127|ref|ZP_03623716.1| holliday junction DNA helicase RuvB [Borrelia burgdorferi 64b]
 gi|224532569|ref|ZP_03673192.1| holliday junction DNA helicase RuvB [Borrelia burgdorferi WI91-23]
 gi|224533948|ref|ZP_03674533.1| holliday junction DNA helicase RuvB [Borrelia burgdorferi CA-11.2a]
 gi|225549285|ref|ZP_03770258.1| holliday junction DNA helicase RuvB [Borrelia burgdorferi 94a]
 gi|225549757|ref|ZP_03770722.1| holliday junction DNA helicase RuvB [Borrelia burgdorferi 118a]
 gi|226321148|ref|ZP_03796689.1| holliday junction DNA helicase RuvB [Borrelia burgdorferi 29805]
 gi|226322063|ref|ZP_03797588.1| holliday junction DNA helicase RuvB [Borrelia burgdorferi Bol26]
 gi|3122844|sp|P70828|RUVB_BORBU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|1620917|emb|CAA70097.1| B subunit of RuvAB helicase [Borrelia burgdorferi]
 gi|2687900|gb|AAC66410.1| Holliday junction DNA helicase (ruvB) [Borrelia burgdorferi B31]
 gi|218164889|gb|ACK74950.1| holliday junction DNA helicase RuvB [Borrelia burgdorferi ZS7]
 gi|221192692|gb|EEE18908.1| holliday junction DNA helicase RuvB [Borrelia burgdorferi 72a]
 gi|223885376|gb|EEF56477.1| holliday junction DNA helicase RuvB [Borrelia burgdorferi 64b]
 gi|224512512|gb|EEF82890.1| holliday junction DNA helicase RuvB [Borrelia burgdorferi WI91-23]
 gi|224512951|gb|EEF83317.1| holliday junction DNA helicase RuvB [Borrelia burgdorferi CA-11.2a]
 gi|225369717|gb|EEG99165.1| holliday junction DNA helicase RuvB [Borrelia burgdorferi 118a]
 gi|225370143|gb|EEG99583.1| holliday junction DNA helicase RuvB [Borrelia burgdorferi 94a]
 gi|226232653|gb|EEH31407.1| holliday junction DNA helicase RuvB [Borrelia burgdorferi Bol26]
 gi|226233440|gb|EEH32180.1| holliday junction DNA helicase RuvB [Borrelia burgdorferi 29805]
 gi|312147772|gb|ADQ30431.1| holliday junction DNA helicase RuvB [Borrelia burgdorferi JD1]
 gi|312149274|gb|ADQ29345.1| holliday junction DNA helicase RuvB [Borrelia burgdorferi N40]
          Length = 347

 Score =  310 bits (794), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 150/336 (44%), Positives = 210/336 (62%), Gaps = 4/336 (1%)

Query: 2   MDREGLLSRNVSQE----DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M  E  +S   S E    D   + LRP+  E+F GQV     L +FI A+K R EALDHV
Sbjct: 1   MKDENSISFLSSNENYLYDKSENELRPKVFEDFKGQVNVKETLSIFIRASKERDEALDHV 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
              GPPGLGKTTLA ++A E+  + + TS P   K  D+  +LT L+++ VLFIDEIHRL
Sbjct: 61  FLSGPPGLGKTTLASIIAFEMNASIKITSAPAFDKPKDIIGILTGLDEKSVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             I+EE+L  AMED++LD ++G+G +AR+V++ L +FTLI ATT+ G +T+PL  RFGI 
Sbjct: 121 RPIIEEMLCIAMEDYELDWVIGQGANARTVRMPLPKFTLIGATTKPGKVTSPLYARFGIT 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            R   Y   +L  I++R + +  + + ++AA  +A  SRGTPRIA RLLRR+RD A+V  
Sbjct: 181 ARFELYSEIELVEIIKRNSLILNIEIEEDAAFLLARSSRGTPRIANRLLRRIRDIAQVTG 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
           +  IT +I    L  L ID  G D+ D   L  +   F GGPVG++T++  + E  D++E
Sbjct: 241 SLVITSDIVSIGLEMLRIDGEGLDEQDRNILRSLILKFNGGPVGVDTLAISVGETADSLE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           D  EPY+I +GFI RT RGR     A+ HL +++  
Sbjct: 301 DFYEPYLIMKGFISRTHRGRKATEFAYLHLNLEMKE 336


>gi|216264915|ref|ZP_03436907.1| holliday junction DNA helicase RuvB [Borrelia burgdorferi 156a]
 gi|215981388|gb|EEC22195.1| holliday junction DNA helicase RuvB [Borrelia burgdorferi 156a]
          Length = 347

 Score =  309 bits (792), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 149/336 (44%), Positives = 210/336 (62%), Gaps = 4/336 (1%)

Query: 2   MDREGLLSRNVSQE----DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M  E  +S   S E    D   + LRP+  ++F GQV     L +FI A+K R EALDHV
Sbjct: 1   MKDENSISFLSSNENYLYDKSENELRPKVFKDFKGQVNVKETLSIFIRASKERDEALDHV 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
              GPPGLGKTTLA ++A E+  + + TS P   K  D+  +LT L+++ VLFIDEIHRL
Sbjct: 61  FLSGPPGLGKTTLASIIAFEMNASIKITSAPAFDKPKDIIGILTGLDEKSVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             I+EE+L  AMED++LD ++G+G +AR+V++ L +FTLI ATT+ G +T+PL  RFGI 
Sbjct: 121 RPIIEEMLCIAMEDYELDWVIGQGANARTVRMPLPKFTLIGATTKPGKVTSPLYARFGIT 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            R   Y   +L  I++R + +  + + ++AA  +A  SRGTPRIA RLLRR+RD A+V  
Sbjct: 181 ARFELYSEIELVEIIKRNSLILNIEIEEDAAFLLARSSRGTPRIANRLLRRIRDIAQVTG 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
           +  IT +I    L  L ID  G D+ D   L  +   F GGPVG++T++  + E  D++E
Sbjct: 241 SLVITSDIVSIGLEMLRIDGEGLDEQDRNILRSLILKFNGGPVGVDTLAISVGETADSLE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           D  EPY+I +GFI RT RGR     A+ HL +++  
Sbjct: 301 DFYEPYLIMKGFISRTHRGRKATEFAYLHLNLEMKE 336


>gi|195941762|ref|ZP_03087144.1| Holliday junction DNA helicase B [Borrelia burgdorferi 80a]
          Length = 347

 Score =  309 bits (792), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 150/336 (44%), Positives = 209/336 (62%), Gaps = 4/336 (1%)

Query: 2   MDREGLLSRNVSQE----DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M  E  +S   S E    D   + LRP+  E+F GQV     L +FI A+K R EALDHV
Sbjct: 1   MKDENSISFLSSNENYLYDKSENELRPKVFEDFKGQVNVKETLSIFIRASKERDEALDHV 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
              GPPGLGKTTLA ++A E+  + + TS P   K  D+  +LT L+++ VLFIDEIHRL
Sbjct: 61  FLSGPPGLGKTTLASIIAFEMNASIKITSAPAFDKPKDIIGILTGLDEKSVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             I+EE+L  AMED++LD ++G+G +AR+V++ L +FTLI ATT+ G +T+PL  RFGI 
Sbjct: 121 RPIIEEMLCIAMEDYELDWVIGQGANARTVRMPLPKFTLIGATTKPGKVTSPLYARFGIT 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            R   Y   +L  I++R + +  + +  +AA  +A  SRGTPRIA RLLRR+RD A+V  
Sbjct: 181 ARFELYSEIELVEIIKRNSLILNIEIEADAAFLLARSSRGTPRIANRLLRRIRDIAQVTG 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
           +  IT +I    L  L ID  G D+ D   L  +   F GGPVG++T++  + E  D++E
Sbjct: 241 SLVITSDIVSIGLEMLRIDGEGLDEQDRNILRSLILKFNGGPVGVDTLAISVGETADSLE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           D  EPY+I +GFI RT RGR     A+ HL +++  
Sbjct: 301 DFYEPYLIMKGFISRTHRGRKATEFAYLHLNLEMKE 336


>gi|224531808|ref|ZP_03672440.1| holliday junction DNA helicase RuvB [Borrelia valaisiana VS116]
 gi|224511273|gb|EEF81679.1| holliday junction DNA helicase RuvB [Borrelia valaisiana VS116]
          Length = 347

 Score =  309 bits (792), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 147/336 (43%), Positives = 207/336 (61%), Gaps = 3/336 (0%)

Query: 1   MMDREG---LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M D      L S      D   + LRP+  E+F GQ      L +FI A+K R EALDHV
Sbjct: 1   MKDENSINFLSSSENYLYDKGENELRPKVFEDFKGQANVKETLSIFIRASKERDEALDHV 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
              GPPGLGKTTLA ++A E+  + + TS P   K  D+  +LT L+++ VLFIDEIHRL
Sbjct: 61  FLSGPPGLGKTTLASIIAFEMNASIKITSAPAFDKPKDIIGILTGLDEKSVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             I+EE+L  AMED++LD ++G+G +AR+V++ L +FTLI ATT+ G +T+PL  RFGI 
Sbjct: 121 RPIIEEMLCIAMEDYELDWVIGQGANARTVRMPLPKFTLIGATTKPGKVTSPLYARFGIT 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            R   Y   +L  I++R + +  + + ++AA  +A  SRGTPRIA RLLRR+RD A+V  
Sbjct: 181 ARFELYSEIELVEIIRRNSVILNIEIEEDAAFLLARSSRGTPRIANRLLRRIRDIAQVTG 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
           +  +T +I    L  L ID  G D+ D   L  +   F GGPVG++T++  + E  D++E
Sbjct: 241 SLVVTSDIVSIGLEMLRIDGEGLDEQDRNILRSLILKFNGGPVGVDTLAISVGETADSLE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           D  EPY+I +GFI RT RGR     A+ HL +++  
Sbjct: 301 DFYEPYLIMKGFINRTHRGRKATEFAYLHLNLEMKE 336


>gi|111114844|ref|YP_709462.1| Holliday junction DNA helicase RuvB [Borrelia afzelii PKo]
 gi|216264013|ref|ZP_03436007.1| holliday junction DNA helicase RuvB [Borrelia afzelii ACA-1]
 gi|123341448|sp|Q0SPE2|RUVB_BORAP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|110890118|gb|ABH01286.1| Holliday junction DNA helicase [Borrelia afzelii PKo]
 gi|215980057|gb|EEC20879.1| holliday junction DNA helicase RuvB [Borrelia afzelii ACA-1]
          Length = 347

 Score =  309 bits (791), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 147/336 (43%), Positives = 209/336 (62%), Gaps = 4/336 (1%)

Query: 2   MDREGLLSRNVSQE----DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M  E  ++   S E    D   + LRP+  E+F GQ      L +FI A+K R EALDHV
Sbjct: 1   MKDENSINFLSSNENYLYDKSENELRPKVFEDFKGQANVKETLSIFIRASKERDEALDHV 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
              GPPGLGKTTLA ++A E+  + + TS P   K  D+  +LT L+++ VLFIDEIHRL
Sbjct: 61  FLSGPPGLGKTTLASIIAFEMNASIKITSAPAFDKPKDIIGILTGLDEKSVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             I+EE+L  AMED++LD ++G+G +AR+V++ L +FTLI ATT+ G +T+PL  RFGI 
Sbjct: 121 RPIIEEMLCIAMEDYELDWVIGQGANARTVRMPLPKFTLIGATTKPGKVTSPLYARFGIT 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            R   Y   +L  I++R + +  + + ++AA  +A  SRGTPRIA RLLRR+RD A+V  
Sbjct: 181 ARFELYSEIELVEIIKRNSIILNIEIEEDAAFLLARSSRGTPRIANRLLRRIRDIAQVTG 240

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
           +  +T +I    L  L ID  G D+ D   L  +   F GGPVG++T++  + E  D++E
Sbjct: 241 SLVVTSDIVAIGLEMLRIDGEGLDEQDRNILRSLILKFNGGPVGVDTLAISVGETADSLE 300

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           D  EPY+I +GFI RT RGR     A+ HL +++  
Sbjct: 301 DFYEPYLIMKGFISRTHRGRKATEFAYLHLNLEMKE 336


>gi|325295514|ref|YP_004282028.1| Holliday junction ATP-dependent DNA helicase ruvB
           [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065962|gb|ADY73969.1| Holliday junction ATP-dependent DNA helicase ruvB
           [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 321

 Score =  308 bits (790), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 149/308 (48%), Positives = 199/308 (64%), Gaps = 1/308 (0%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP++L EF GQ      LK+ IE+AK R E LDH+LF GPPG GKTTL+ ++AREL    
Sbjct: 4   RPKSLNEFLGQERVKKILKIAIESAKQRKEPLDHILFYGPPGTGKTTLSMIIARELEKEI 63

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGP 142
           +  S P I K GDL AL+T+L + DVLFIDEIHRL+  VEE +Y AMEDF++D++ GE  
Sbjct: 64  KIVSAPTIEKKGDLLALVTSLNEGDVLFIDEIHRLNRAVEETIYSAMEDFRIDIVTGE-T 122

Query: 143 SARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLA 202
            A+S  I+L +FTLI ATTR+ LLT P + RFGI  RL  Y   +LK I +  +   G+ 
Sbjct: 123 RAKSFSIDLPKFTLIGATTRLNLLTPPFRSRFGIVCRLELYSAIELKEIAKTTSAKLGIR 182

Query: 203 VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQ 262
           +++ A   +A  SRG PRI  +LL+R RD+A V + K I  E A+  L+ L ID  G D 
Sbjct: 183 LSERALEILARCSRGAPRILNQLLKRFRDYATVNNWKEIDSEKANKILMELGIDSYGLDP 242

Query: 263 LDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPI 322
           +D + L  IA  F GGPVG+ T++  L E  D IE++ EPY+I+ G I +TPRGR +   
Sbjct: 243 MDRKILKTIAETFKGGPVGLTTLATVLKEDVDTIENVHEPYLIELGLIVKTPRGRKITSK 302

Query: 323 AWQHLGID 330
           A + LG+ 
Sbjct: 303 ALKLLGLT 310


>gi|149178845|ref|ZP_01857425.1| Holliday junction DNA helicase B [Planctomyces maris DSM 8797]
 gi|148842320|gb|EDL56703.1| Holliday junction DNA helicase B [Planctomyces maris DSM 8797]
          Length = 393

 Score =  308 bits (790), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 151/324 (46%), Positives = 207/324 (63%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           S  ++ +      LRP+ L E  GQ      L+VF++A + R E L H+L  GPPGLGKT
Sbjct: 63  SSFLADDGEYDDALRPQRLSEVVGQRAVVERLEVFLDATRKRNEPLGHLLLDGPPGLGKT 122

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           TLA V+ RELG   + TSGP ++   DL   LTN      LFIDEIHR+   VEE +YPA
Sbjct: 123 TLASVLPRELGTELQITSGPSLSAPKDLLPFLTNASHGSFLFIDEIHRMPATVEEFIYPA 182

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           MEDF++D+ +GEG +AR+V + L +FT+I ATTR G+LT PL+DRF     L+FYE ++L
Sbjct: 183 MEDFRVDITLGEGLNARTVNMKLQKFTVIGATTRSGMLTAPLRDRFVRREHLDFYEDQEL 242

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             IV+R A+     +TD+AA EIA RSRGTPR A  LLR  RDFA       IT E+   
Sbjct: 243 IEIVRRNARKLKTPITDDAAFEIARRSRGTPRKANNLLRWARDFATSKADGKITNEVVKR 302

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           A   L ID++G ++ D RYL  + + F GGP G++ +   L+ P D +ED +EP++++ G
Sbjct: 303 AFEMLEIDQLGLERQDRRYLEALVKTFSGGPAGVQALGHTLNIPADTLEDEVEPFLLRCG 362

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIP 332
           FIQR+PRGR++   A +HL ++ P
Sbjct: 363 FIQRSPRGRIVTMAAMEHLNLNPP 386


>gi|194476933|ref|YP_002049112.1| Holliday junction DNA helicase RuvB [Paulinella chromatophora]
 gi|171191940|gb|ACB42902.1| Holliday junction DNA helicase RuvB [Paulinella chromatophora]
          Length = 356

 Score =  308 bits (789), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 148/322 (45%), Positives = 206/322 (63%), Gaps = 1/322 (0%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           N S     ++ LRP++L ++ GQ E    L++ I+AA  +   +DHVL  GP GLGKTT+
Sbjct: 35  NGSTRTLQVNSLRPKSLNDYIGQKELKQILRIAIKAAYTQEGTMDHVLLYGPAGLGKTTI 94

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           A V+A ELGV  R  S P I +  D+  LL NLE  +VLFIDEIHRL+ I EE+LY AME
Sbjct: 95  ALVLAAELGVPCRIISAPAIERPRDIIGLLMNLEPNEVLFIDEIHRLNRISEELLYAAME 154

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           DF+LD+ VG+   AR   I+++ FTL+ ATT  G L+  L+DRFG+  RL+ Y +EDL  
Sbjct: 155 DFRLDISVGKSRVARIRNISINPFTLVGATTHAGALSPALRDRFGLVQRLSLYSLEDLCN 214

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA-HAKTITREIADAA 249
           I++R A +  L + + A  EIA R RGTPRIA RLLRR+RD   +  +   I  E+A+  
Sbjct: 215 IIKRTANILLLTLDEAAVLEIAQRCRGTPRIANRLLRRIRDVTSLRDNDNYINEELANEV 274

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           L    +D  G D  D R L  +  N+GGGPVG++TI+A L E    +E  +EP+++Q GF
Sbjct: 275 LSLHQVDNRGLDANDRRILQFLIENYGGGPVGLQTIAASLGEDATILESFVEPFLMQMGF 334

Query: 310 IQRTPRGRLLMPIAWQHLGIDI 331
           ++RTPRGR++    ++HLG  +
Sbjct: 335 LKRTPRGRIVTLEGYKHLGWPV 356


>gi|332295727|ref|YP_004437650.1| Holliday junction ATP-dependent DNA helicase ruvB
           [Thermodesulfobium narugense DSM 14796]
 gi|332178830|gb|AEE14519.1| Holliday junction ATP-dependent DNA helicase ruvB
           [Thermodesulfobium narugense DSM 14796]
          Length = 319

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 149/310 (48%), Positives = 209/310 (67%), Gaps = 1/310 (0%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +++LRP++ +E+ GQ      LK+ ++AAK R E LDH+L  GPPGLGKTTLA ++A E+
Sbjct: 1   MNILRPKSFDEYIGQETIKRLLKISVDAAKKRNEMLDHILLSGPPGLGKTTLASILAYEM 60

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNL-EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           G NF+      + K  DL  LLT++ ++  VLFIDEIHRL   +EEILY +MED+ +D+ 
Sbjct: 61  GKNFKFAIASALQKPIDLVGLLTSIDKEGSVLFIDEIHRLPKNLEEILYISMEDYIVDIS 120

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
           V +G  A+S+++NL  FTLI ATT+ GLL++PL DRFGI     FY++E+L  I++R A+
Sbjct: 121 VSKGVGAQSIRLNLPPFTLICATTKPGLLSSPLIDRFGIHGYFEFYQVEELTAIIKRSAQ 180

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257
              L + +EA+  +A RSR TPR+A +LLRRVRD+ +V   K I  E A  +L  + ID 
Sbjct: 181 FLELDIEEEASEFLAKRSRFTPRVANKLLRRVRDYVQVNKIKLIDVEAARKSLEIINIDD 240

Query: 258 MGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317
           +G + LD +YL  +   F GGPVGI+ IS  L E  + IEDL EPY+++  FIQRTPRGR
Sbjct: 241 LGLNDLDRKYLRALKDIFKGGPVGIDNISQFLGESPETIEDLCEPYLLKIDFIQRTPRGR 300

Query: 318 LLMPIAWQHL 327
           +L   A  +L
Sbjct: 301 ILTENALNYL 310


>gi|194246568|ref|YP_002004207.1| Holliday junction DNA helicase RuvB [Candidatus Phytoplasma mali]
 gi|254767435|sp|B3R0J0|RUVB_PHYMT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|193806925|emb|CAP18354.1| Holliday junction DNA helicase B [Candidatus Phytoplasma mali]
          Length = 332

 Score =  307 bits (785), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 149/310 (48%), Positives = 215/310 (69%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           D     LRP TL+E+ GQ      L V+I+AAK R E+L+H+L  GPPGLGKTTLA++VA
Sbjct: 15  DEKEKNLRPETLKEYMGQKNLKEILSVYIKAAKKRKESLEHLLIYGPPGLGKTTLAKIVA 74

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           +EL VNF+ TSG  + ++GDL A L++L+  DVLFIDEIHRL   +EEILY AMED+ LD
Sbjct: 75  KELNVNFKITSGAAMERSGDLVATLSSLQMGDVLFIDEIHRLPKSIEEILYSAMEDYVLD 134

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           +++G     +S++I+L  FTLI ATTR G +++PL+DRFG+ ++LN+Y  ++L+ I++R 
Sbjct: 135 IVLGTENEKKSIRIDLPPFTLIGATTRFGDISSPLRDRFGLILKLNYYSEDELELIIKRT 194

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255
           + +    + +    ++  RSRGTPRIA RL RR+RDFA+V +   I   I++ AL +L I
Sbjct: 195 SLVYNTKIDNNTLKKLVKRSRGTPRIANRLFRRIRDFADVYNKGLIDEHISEIALEKLTI 254

Query: 256 DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR 315
           DK G D  D  YL  +   F GGPVGI+ I+A + E    IED+ EPY++++G+I+RT R
Sbjct: 255 DKNGLDDADYTYLKSLIEKFEGGPVGIKNIAANIGEEVSTIEDIYEPYLLKEGYIKRTKR 314

Query: 316 GRLLMPIAWQ 325
           GR+  P+ ++
Sbjct: 315 GRIATPLTFK 324


>gi|87308972|ref|ZP_01091110.1| holliday junction DNA helicase RuvB [Blastopirellula marina DSM
           3645]
 gi|87288315|gb|EAQ80211.1| holliday junction DNA helicase RuvB [Blastopirellula marina DSM
           3645]
          Length = 336

 Score =  306 bits (784), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 150/326 (46%), Positives = 211/326 (64%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M RE LL +       D   LRP+++ +  GQ E    L++ ++AA  R E L H+LF G
Sbjct: 1   MAREALLQQGDGHGPEDERSLRPQSMADMVGQREVAKRLQIVVDAAMKRDEPLGHILFDG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTT A  + ++LGVNF+ TSGP I    DL   LTN ++R +LFIDEIHR+   V
Sbjct: 61  PPGLGKTTFATCIPKDLGVNFQLTSGPAIQAPKDLVPYLTNADERSILFIDEIHRIPKAV 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE LY AMEDF++D+++GEG +AR++ + +  FTLI ATTR G+L+ PL+DRF +   L+
Sbjct: 121 EEYLYTAMEDFRIDIVLGEGTNARTINLQIKPFTLIGATTRSGMLSAPLRDRFVLREHLD 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY  ++L  IV+R +K  G+ + D+AA EI+ RSR TPR+A   LR VRDFA       +
Sbjct: 181 FYSDDELAEIVRRNSKKLGVTIDDDAALEISKRSRSTPRVANNRLRWVRDFATSRSDGHV 240

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T E+A AA+   AID +G D+ D  YL+ + R F GGP GIE I+  ++   D + D +E
Sbjct: 241 TLELARAAMEMQAIDDLGLDKQDRNYLSTLVRVFAGGPAGIEAIAHTMNAATDTLADEVE 300

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHL 327
           P++++   + RTPRGR++ P A  HL
Sbjct: 301 PFLLRTELVVRTPRGRVVTPKAMGHL 326


>gi|325109079|ref|YP_004270147.1| Holliday junction DNA helicase subunit RuvB [Planctomyces
           brasiliensis DSM 5305]
 gi|324969347|gb|ADY60125.1| Holliday junction DNA helicase subunit RuvB [Planctomyces
           brasiliensis DSM 5305]
          Length = 351

 Score =  306 bits (783), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 148/312 (47%), Positives = 207/312 (66%), Gaps = 1/312 (0%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFR 83
           P+ L E  GQ +    +++ + AA++R ++L H+L  GPPGLGKTTLA  + +ELG +F+
Sbjct: 39  PQALSEIVGQQKVVERVQIMLTAAQSRGDSLGHLLLEGPPGLGKTTLAMALPKELGSDFQ 98

Query: 84  STSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPS 143
            TSGP +    DL   LT   +R VLFIDEIHRL   VEE +YPAMEDF++D+ +G+G +
Sbjct: 99  ITSGPTLKAPKDLLPYLTRATERSVLFIDEIHRLPPAVEEFIYPAMEDFRVDIALGDGLN 158

Query: 144 ARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAV 203
           AR+V + L  FT++ ATTR G+LT PL+DRF      +FYE  +L T++QR A     ++
Sbjct: 159 ARTVNMTLKPFTIVGATTRSGMLTAPLRDRFVNRAHFDFYETHELATLLQRNATKLRTSL 218

Query: 204 TDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI-TREIADAALLRLAIDKMGFDQ 262
             +AA EI MRSRGTPR A  LLR +RDFA+V H     + EIA+AA+  + ID +G ++
Sbjct: 219 APDAAEEIGMRSRGTPRKANNLLRWIRDFAQVQHKSNDISLEIANAAMAMIEIDAIGLEE 278

Query: 263 LDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPI 322
           +D RYL  +   F GGP G+  I   ++ P D +ED IEP++++QGFIQRTPRGR++ P 
Sbjct: 279 MDRRYLMTLISVFSGGPAGLNAIGHSMNVPPDTLEDEIEPFLLRQGFIQRTPRGRMVTPA 338

Query: 323 AWQHLGIDIPHR 334
           AW HL I    +
Sbjct: 339 AWDHLNITPTQK 350


>gi|322378944|ref|ZP_08053358.1| RuvB protein [Helicobacter suis HS1]
 gi|322379798|ref|ZP_08054095.1| Holliday junction DNA helicase B [Helicobacter suis HS5]
 gi|321147766|gb|EFX42369.1| Holliday junction DNA helicase B [Helicobacter suis HS5]
 gi|321148620|gb|EFX43106.1| RuvB protein [Helicobacter suis HS1]
          Length = 335

 Score =  305 bits (782), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 147/314 (46%), Positives = 213/314 (67%), Gaps = 1/314 (0%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           + LRP   +E+ GQ      L+V I A K R + LDH+LF GPPGLGKTTL+ ++A+EL 
Sbjct: 18  TSLRPSLWKEYIGQEPLKKLLQVSIMATKKRGDTLDHILFFGPPGLGKTTLSYIIAKELN 77

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
              + T+ P+I K GDLAA+LTNL+ +++LFIDEIHRLS  +EE+LYPAMEDF+LD+++G
Sbjct: 78  TPIKVTTAPMIEKTGDLAAILTNLKPKEILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIG 137

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199
              +A+++KI+L+ FTLI ATTR G+L+NPL+DRFG+  RL FY I +L TI  + +   
Sbjct: 138 SKAAAQTIKIDLAPFTLIGATTRAGMLSNPLRDRFGMHFRLEFYSIAELSTITTQASLKL 197

Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259
              +  +A+ EIA R RGTPRIA RLLRRVRDFA+ A   +I       AL  L ++  G
Sbjct: 198 RKPIEPKASLEIASRCRGTPRIALRLLRRVRDFADSAGKDSIDLATTQLALEALGVNAYG 257

Query: 260 FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLL 319
            D LDLRYL ++A      P+G+ T++A + E    +E+++EP+++  G+++RT +GR+ 
Sbjct: 258 LDTLDLRYLELLANA-KNRPLGLSTLAASMHEDESTLEEVVEPFLLANGYLERTAKGRIA 316

Query: 320 MPIAWQHLGIDIPH 333
            P  ++ L +  P 
Sbjct: 317 TPKTYEILKLRPPQ 330


>gi|325846491|ref|ZP_08169406.1| Holliday junction DNA helicase RuvB [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325481249|gb|EGC84290.1| Holliday junction DNA helicase RuvB [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 279

 Score =  305 bits (781), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 146/278 (52%), Positives = 200/278 (71%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHR 116
           +L  GPPGLGKTTL+ ++A ELGVN R TSGP I +  DLA++LTNL+  DVLFIDEIHR
Sbjct: 1   MLLQGPPGLGKTTLSNIIANELGVNIRITSGPAIERPSDLASILTNLDKGDVLFIDEIHR 60

Query: 117 LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
           ++  VEEILYPAMEDF LD++VG+GP+A+S++I+L +FTL+ ATTR G+L+ PL+DRFG+
Sbjct: 61  INRSVEEILYPAMEDFALDIIVGKGPNAQSIRIDLEKFTLVGATTRAGMLSAPLRDRFGV 120

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
            + LN Y+ +DL  IV+R A +  + + ++ A EIA RSRGTPRIA RLL+RVRD+A V 
Sbjct: 121 LLSLNLYDTKDLTKIVKRSADILDIPIDEKGAFEIARRSRGTPRIANRLLKRVRDYAIVK 180

Query: 237 HAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAI 296
             + I  E +   L  L +D MG D +D + +  +  NF GGPVG++TI+A        I
Sbjct: 181 KDEIIDYETSCEGLELLEVDPMGLDNMDKKIVLTMHENFDGGPVGVDTIAASTGIENVTI 240

Query: 297 EDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           ED+ EPY++Q GF+ RTPRGR+L   A++H G+    +
Sbjct: 241 EDVYEPYLLQIGFLTRTPRGRILTKKAYEHYGLKYKDK 278


>gi|168700086|ref|ZP_02732363.1| Holliday junction DNA helicase B [Gemmata obscuriglobus UQM 2246]
          Length = 347

 Score =  305 bits (780), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 150/328 (45%), Positives = 212/328 (64%), Gaps = 1/328 (0%)

Query: 2   MDREGLLSRNVSQEDAD-ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M RE +++     E     + LRP+ L+E  GQ +    L++ + A+K   E L H+LF 
Sbjct: 1   MAREKVITSGPGDEQKKHDAALRPKLLKEVIGQRKVAERLEIAVRASKKLNEPLGHILFD 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GPPGLGKTT A V+  ELG + + TSGP +AK  DL   LTNLE+  VLFIDEIHR+  +
Sbjct: 61  GPPGLGKTTFATVLPNELGTSLQMTSGPALAKPADLLPFLTNLEEGSVLFIDEIHRMPRV 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           VEE +YPAMEDF++D+++GEG SAR++ + L RFTLI ATTR G+L+ P++DRF +   L
Sbjct: 121 VEEFIYPAMEDFRIDIVLGEGMSARTISMTLKRFTLIGATTRSGMLSGPMRDRFKMHEHL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            FY +++L TI    A      +T +A+ E+A RSRGTPR+A   L   R FA   H  T
Sbjct: 181 EFYSVDELATIATVNAAKLNTPITSQASLELARRSRGTPRVANSRLHWTRSFAAAQHDGT 240

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           IT E+A AAL    +D+ G D+ D +YL  +   +GGGP G+E ++A ++   D + D I
Sbjct: 241 ITEEVARAALDMAEVDRDGLDKNDRKYLETLIDLYGGGPTGVEALAATINLASDTLSDEI 300

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
           EPY++++ +I R+PRGR+ MP A+  LG
Sbjct: 301 EPYLLREQYITRSPRGRVAMPRAYSALG 328


>gi|319790480|ref|YP_004152113.1| Holliday junction DNA helicase RuvB [Thermovibrio ammonificans
           HB-1]
 gi|317114982|gb|ADU97472.1| Holliday junction DNA helicase RuvB [Thermovibrio ammonificans
           HB-1]
          Length = 320

 Score =  302 bits (774), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 144/307 (46%), Positives = 195/307 (63%), Gaps = 3/307 (0%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP +  EF GQ      LKV +E+AK R E LDH+L  GPPG GKTTLA ++A EL V  
Sbjct: 4   RPSSFAEFIGQEPVKRVLKVAVESAKRRGEPLDHILLYGPPGTGKTTLATILASELRVGL 63

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGP 142
           +  S P + + GDL  +LT L + D+LFIDEIHRL   +EE+LY AMEDF++D++VG   
Sbjct: 64  KLLSAPTVERKGDLLGVLTTLNEGDILFIDEIHRLPRSIEEMLYTAMEDFRVDVIVG--- 120

Query: 143 SARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLA 202
             R+V   L  FTL+ ATTR+ L+T PL+ RFGI  RL  Y   +LK + +RGA+   L 
Sbjct: 121 GKRAVSFELPPFTLVGATTRLNLITPPLRSRFGIVCRLELYSPRELKEVARRGAEKLKLN 180

Query: 203 VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQ 262
           +T+ A   +A  SRGTPRI  ++L+RVRD+A V   + I     +A L  L ID+ G D+
Sbjct: 181 LTEGALELLAGCSRGTPRILNQILKRVRDYATVHGWEVIDAREVEAVLEDLGIDRYGLDR 240

Query: 263 LDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPI 322
           LD + L  IA  F GGPVG+ T+S  L E  D +E + EP++I+ G++ +TPRGR L   
Sbjct: 241 LDRKILETIATTFKGGPVGLSTLSTVLKEDPDTVESVHEPFLIEMGYLVKTPRGRKLTEK 300

Query: 323 AWQHLGI 329
            W+ LG+
Sbjct: 301 GWKALGL 307


>gi|33241224|ref|NP_876166.1| Holliday junction DNA helicase B [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|44888417|sp|Q7V9Q4|RUVB_PROMA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|33238754|gb|AAQ00819.1| Holliday junction resolvasome helicase subunit [Prochlorococcus
           marinus subsp. marinus str. CCMP1375]
          Length = 356

 Score =  302 bits (774), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 161/327 (49%), Positives = 220/327 (67%), Gaps = 4/327 (1%)

Query: 6   GLLSRNVSQEDADISL---LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
            LL    S E+  +     LRP+  +EF GQ      L + ++AA +R EALDHVL  GP
Sbjct: 21  RLLDPTPSLEEGKVRKEDSLRPKCWDEFIGQSALKEVLGISVKAALSRKEALDHVLLYGP 80

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTT+A V+  ELGV  R TS P + +  D+  LL NLE  ++LF+DEIHRLS + E
Sbjct: 81  PGLGKTTMALVLGNELGVKCRITSAPALERPRDIIGLLLNLEPNELLFVDEIHRLSKVAE 140

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPA+EDF++DL VG+G +AR+ +INL RFTL+ ATT+   +++PL+DRFGI  RLNF
Sbjct: 141 ELLYPALEDFRIDLTVGKGTTARTREINLPRFTLVGATTKPASISSPLRDRFGITQRLNF 200

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA-KTI 241
           Y I DL  I+QR A L GL++T +A  EIA R RGTPRIA RLLRRVRD+A V +  K +
Sbjct: 201 YSISDLNRIIQRAADLFGLSLTGDAGLEIARRCRGTPRIANRLLRRVRDYATVQNQLKLV 260

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
            + + D +L    +D+ G DQ D R+L  I     GGPVG++T++A L E    +E ++E
Sbjct: 261 DKSLVDKSLTLHQVDECGLDQSDRRFLLFIIDVHNGGPVGLDTLAAALGEEAATLESVVE 320

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLG 328
           P+++Q GF++RT RGR++   A +HL 
Sbjct: 321 PFLLQIGFLKRTSRGRVITQAALEHLN 347


>gi|257458849|ref|ZP_05623972.1| holliday junction DNA helicase RuvB [Campylobacter gracilis RM3268]
 gi|257443837|gb|EEV18957.1| holliday junction DNA helicase RuvB [Campylobacter gracilis RM3268]
          Length = 338

 Score =  302 bits (773), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 162/327 (49%), Positives = 227/327 (69%), Gaps = 2/327 (0%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MDR   + + +  +++  S LRP + E++ GQ +  SNL + I AAK RA+ LDHVLF G
Sbjct: 1   MDRIVEIEK-MQLDESVESSLRPSSFEDYVGQEKIKSNLAIAIAAAKKRADVLDHVLFYG 59

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A ++G   + T+ P+I KAGDLAA+LTNL+  DVLFIDEIHRLS  +
Sbjct: 60  PPGLGKTTLAHIIAAQMGAAIKVTAAPMIEKAGDLAAILTNLQSGDVLFIDEIHRLSPAI 119

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMEDF+LD+++G GP+A+++KI++  FTLI ATTR G+++ PL+DRFG+  RL 
Sbjct: 120 EEVLYSAMEDFRLDIIIGSGPAAQTIKIDIPHFTLIGATTRAGMISAPLRDRFGMQFRLQ 179

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY   +L  IVQ  +   G     +A+ EIA RSRGTPRIA RLLRR+RDFAEV     I
Sbjct: 180 FYTHAELARIVQIASVKLGKESAADASAEIARRSRGTPRIALRLLRRIRDFAEVRDEGAI 239

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           + + A   L  L +D+ GFD++D++YL ++        +G+ TI+A LSE    IED+IE
Sbjct: 240 SHDRAREGLEALGVDEQGFDEMDIKYLEILFDA-KHRALGLSTIAAALSEDEGTIEDVIE 298

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLG 328
           PY++  G+I++T +GR+    A + LG
Sbjct: 299 PYLLANGYIEKTAKGRIATDKAREALG 325


>gi|261885273|ref|ZP_06009312.1| Holliday junction DNA helicase RuvB [Campylobacter fetus subsp.
           venerealis str. Azul-94]
          Length = 318

 Score =  301 bits (772), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 163/318 (51%), Positives = 230/318 (72%), Gaps = 4/318 (1%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MDR   + + VS E      LRP T EE+ GQ +  SNLKVFI+AAK R E+LDHVLF G
Sbjct: 1   MDRIVEIEK-VSFESEYEVTLRPLTFEEYIGQEKIKSNLKVFIKAAKKRLESLDHVLFYG 59

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+G N + +S P+I K+GDLAA+LTNLE+ DVLFIDEIHRLS  +
Sbjct: 60  PPGLGKTTLAHIIANEMGANIKISSAPMIEKSGDLAAILTNLEEGDVLFIDEIHRLSPAI 119

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMEDF+LD+++G GP+A+++KI++ +FTLI ATTR G+++ PL+DRFG+  RL 
Sbjct: 120 EEVLYSAMEDFRLDIIIGSGPAAQTIKIDIPKFTLIGATTRAGMISAPLRDRFGMQFRLQ 179

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY   +L  I+   A   G   T EA+ EIA RSRGTPRIA RLL+R+RDFAEV+   +I
Sbjct: 180 FYTDNELARIISIAASKLGKNSTKEASLEIAKRSRGTPRIALRLLKRIRDFAEVSDENSI 239

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           +++ A ++L  L ++ +GFD++DL+YL ++        +G+ TI+A LSE    ++++I+
Sbjct: 240 SKDRAKSSLDSLGVNDLGFDEMDLKYLDILV--GSKRALGLSTIAAALSEDEGTVKEVID 297

Query: 302 PYMIQQGFIQRTP-RGRL 318
           PY++   F ++ P +GR+
Sbjct: 298 PYLLLNRFYRKEPEKGRI 315


>gi|296122677|ref|YP_003630455.1| Holliday junction DNA helicase RuvB [Planctomyces limnophilus DSM
           3776]
 gi|296015017|gb|ADG68256.1| Holliday junction DNA helicase RuvB [Planctomyces limnophilus DSM
           3776]
          Length = 349

 Score =  301 bits (770), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 148/315 (46%), Positives = 195/315 (61%), Gaps = 1/315 (0%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
            + A    LRP  L +  GQ +    L++ + A + R E L H+L  GPPGLGKTTLA  
Sbjct: 33  DDRALDEELRPSRLADVVGQRKVVERLEIMLAATRMRTEPLSHILLDGPPGLGKTTLALA 92

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +A+EL V  + TSGP +A   DL   LTN     +LFIDEIHRL   VEE +YP MEDF+
Sbjct: 93  LAKELDVECQITSGPALAAPKDLLPYLTNASGNSILFIDEIHRLPAAVEEFIYPVMEDFR 152

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           +D+++GEG +AR++ + L  FT++ ATTR G+LT PL+DRF     L FYE  DL  IV+
Sbjct: 153 VDIVLGEGLNARTINMKLKPFTIVGATTRSGMLTAPLRDRFTFREHLEFYEEADLAEIVR 212

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH-AKTITREIADAALLR 252
           R A      + D +A EIA RSRGTPR +  LLR  RDFA V      IT EIA  AL  
Sbjct: 213 RNAIKLRTKIDDSSALEIARRSRGTPRKSNNLLRWARDFATVKQKEGLITNEIARQALAM 272

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L ID +G ++ D +YL  I   FGGGP G+  I+  ++ P D +ED +EP++++ GFIQR
Sbjct: 273 LEIDVLGLEEQDRKYLRTIVNVFGGGPAGLAAIAHTMNCPPDTLEDEVEPFLLRCGFIQR 332

Query: 313 TPRGRLLMPIAWQHL 327
           TPRGR++      HL
Sbjct: 333 TPRGRIVTASGLNHL 347


>gi|28572650|ref|NP_789430.1| Holliday junction DNA helicase B [Tropheryma whipplei TW08/27]
 gi|28410782|emb|CAD67168.1| holliday junction DNA helicase RuvB [Tropheryma whipplei TW08/27]
          Length = 331

 Score =  300 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 161/317 (50%), Positives = 218/317 (68%), Gaps = 1/317 (0%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           S E      LRP+ L EF GQ +  + L + I+AAK +    DH L  GPPGLGKTTLA 
Sbjct: 3   SDEKQTEGALRPKLLAEFVGQNKVKNQLALLIQAAKIQGRVTDHALLAGPPGLGKTTLAM 62

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           +VA E GV+ R +SGP I  AGDLAALL++L   ++LFIDEIHR+S + EE+LY AMEDF
Sbjct: 63  IVAAECGVSIRMSSGPAIQHAGDLAALLSSLLPGELLFIDEIHRMSRVAEEMLYLAMEDF 122

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           ++D+MVG+GP A SV + LS FTL+ ATTR GLL  PL+DRFG   RL+FY  E+L  ++
Sbjct: 123 RIDIMVGKGPGATSVPLELSPFTLVGATTRAGLLPGPLRDRFGFTARLDFYSPEELLQVL 182

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH-AKTITREIADAALL 251
            R A+L  +   D+A   IA+RSRGTPR+A RLLRR RD+  V++ ++ +++EIA  A+ 
Sbjct: 183 IRSARLMEIQYYDDALESIAVRSRGTPRVANRLLRRTRDYLLVSNSSEILSKEIALKAMD 242

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
              +D +G D+LD   L  I   F GGPVGI+T+SA L E  + IE+ IEP++++QG + 
Sbjct: 243 VYEVDSLGLDRLDRAVLHAIFDRFSGGPVGIKTLSAYLGEEAETIENSIEPFLVRQGLLV 302

Query: 312 RTPRGRLLMPIAWQHLG 328
           RTPRGR +  +A +H+G
Sbjct: 303 RTPRGRQITDLARKHMG 319


>gi|28493236|ref|NP_787397.1| Holliday junction DNA helicase RuvB [Tropheryma whipplei str.
           Twist]
 gi|44888464|sp|Q83HN0|RUVB_TROW8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|44888470|sp|Q83MZ8|RUVB_TROWT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|28476277|gb|AAO44366.1| holliday junction binding protein RuvB [Tropheryma whipplei str.
           Twist]
          Length = 345

 Score =  300 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 161/317 (50%), Positives = 218/317 (68%), Gaps = 1/317 (0%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           S E      LRP+ L EF GQ +  + L + I+AAK +    DH L  GPPGLGKTTLA 
Sbjct: 17  SDEKQTEGALRPKLLAEFVGQNKVKNQLALLIQAAKIQGRVTDHALLAGPPGLGKTTLAM 76

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           +VA E GV+ R +SGP I  AGDLAALL++L   ++LFIDEIHR+S + EE+LY AMEDF
Sbjct: 77  IVAAECGVSIRMSSGPAIQHAGDLAALLSSLLPGELLFIDEIHRMSRVAEEMLYLAMEDF 136

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           ++D+MVG+GP A SV + LS FTL+ ATTR GLL  PL+DRFG   RL+FY  E+L  ++
Sbjct: 137 RIDIMVGKGPGATSVPLELSPFTLVGATTRAGLLPGPLRDRFGFTARLDFYSPEELLQVL 196

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH-AKTITREIADAALL 251
            R A+L  +   D+A   IA+RSRGTPR+A RLLRR RD+  V++ ++ +++EIA  A+ 
Sbjct: 197 IRSARLMEIQYYDDALESIAVRSRGTPRVANRLLRRTRDYLLVSNSSEILSKEIALKAMD 256

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
              +D +G D+LD   L  I   F GGPVGI+T+SA L E  + IE+ IEP++++QG + 
Sbjct: 257 VYEVDSLGLDRLDRAVLHAIFDRFSGGPVGIKTLSAYLGEEAETIENSIEPFLVRQGLLV 316

Query: 312 RTPRGRLLMPIAWQHLG 328
           RTPRGR +  +A +H+G
Sbjct: 317 RTPRGRQITDLARKHMG 333


>gi|320102186|ref|YP_004177777.1| Holliday junction DNA helicase subunit RuvB [Isosphaera pallida
           ATCC 43644]
 gi|319749468|gb|ADV61228.1| Holliday junction DNA helicase subunit RuvB [Isosphaera pallida
           ATCC 43644]
          Length = 377

 Score =  300 bits (767), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 149/317 (47%), Positives = 199/317 (62%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +     LRPR L E  GQ +    L + +EAA+ RAE L H+LF GPPGLGKTT A V+ 
Sbjct: 39  EVSDESLRPRRLAEVIGQRKVAERLAIALEAARKRAEPLPHILFDGPPGLGKTTFATVLH 98

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
            ELGV    TSGP + K  D+   LTN  +  +LFIDEIHRL   VEE +YP MEDF++D
Sbjct: 99  NELGVELAMTSGPALDKKMDVMPYLTNAVEGSILFIDEIHRLPKTVEEFIYPVMEDFRVD 158

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           +++GEG +AR++ + L RFT+I ATTR G+L+ PL+DRF +   L FY+  DL  IV   
Sbjct: 159 VVLGEGMAARTINLPLKRFTIIGATTRSGMLSGPLRDRFHLHEHLEFYDAADLARIVTVN 218

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255
           A+   + +  +AA EIA RSRGTPR+A   LR VRDFA       I+  +A  AL    I
Sbjct: 219 ARKLKVTLDADAAEEIARRSRGTPRLANARLRWVRDFALARANGHISLSVARDALAMQEI 278

Query: 256 DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR 315
           D+ G D+ D RYL  + + F GGP G+E I+A ++   D + D +EPYM+++ FI RTPR
Sbjct: 279 DQEGLDRQDRRYLETLIQVFRGGPTGVEAIAATMNVSVDTLTDEVEPYMLRRRFIVRTPR 338

Query: 316 GRLLMPIAWQHLGIDIP 332
           GR   P  ++ LG+  P
Sbjct: 339 GRRATPEGYRVLGLTPP 355


>gi|32474557|ref|NP_867551.1| Holliday junction DNA helicase RuvB [Rhodopirellula baltica SH 1]
 gi|44888405|sp|Q7UPG4|RUVB_RHOBA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|32445096|emb|CAD75098.1| holliday junction DNA helicase RuvB [Rhodopirellula baltica SH 1]
          Length = 366

 Score =  296 bits (757), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 132/317 (41%), Positives = 192/317 (60%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
               LRP+ + E  GQ +    L++ I+AA+ R E L H+LF GPPGLGKTT A V+  E
Sbjct: 47  PDVTLRPQRMAEMVGQQDVIERLRIAIDAAQVRGEPLGHILFDGPPGLGKTTFATVIPSE 106

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           +    +  +G  +    DL   LTN+    VLFIDEIHR+   +EE LY AMEDF++D++
Sbjct: 107 MKTTVQMANGAGLKAPRDLLPYLTNVSRGSVLFIDEIHRVPRAIEEYLYTAMEDFRIDIV 166

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
           +GEG +AR++ ++L  FTLI ATTR G+LT PL+DRF I   L +Y  ++L  IV R +K
Sbjct: 167 LGEGVNARTLNLSLEPFTLIGATTRAGMLTAPLRDRFQIREHLGWYTRKELAEIVLRNSK 226

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257
              + V   +A  IA RSR TPR+A   L  VRD+A+      +   + +AAL  + ID 
Sbjct: 227 KLNIEVDPTSAGVIADRSRSTPRLANNRLLWVRDYAQSKTKGNVEASVCEAALDMIGIDH 286

Query: 258 MGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317
           +G D+ D  YL  + R F GGP G++ I+  ++   D +ED +EP++++   + RT RGR
Sbjct: 287 LGLDKQDRNYLDTLMRVFLGGPAGLDAIAHTMNVSSDTLEDEVEPFLLRSELLVRTRRGR 346

Query: 318 LLMPIAWQHLGIDIPHR 334
           L  P A++H+   +P R
Sbjct: 347 LATPKAFEHMKRQMPDR 363


>gi|327543392|gb|EGF29817.1| Holliday junction DNA helicase RuvB [Rhodopirellula baltica WH47]
          Length = 379

 Score =  295 bits (755), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 132/317 (41%), Positives = 192/317 (60%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
               LRP+ + E  GQ +    L++ I+AA+ R E L H+LF GPPGLGKTT A V+  E
Sbjct: 60  PDVTLRPQRMAEMVGQQDVIERLRIAIDAAQVRGEPLGHILFDGPPGLGKTTFATVIPSE 119

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           +    +  +G  +    DL   LTN+    VLFIDEIHR+   +EE LY AMEDF++D++
Sbjct: 120 MKTTVQMANGAGLKAPRDLLPYLTNVSRGSVLFIDEIHRVPRAIEEYLYTAMEDFRIDIV 179

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
           +GEG +AR++ ++L  FTLI ATTR G+LT PL+DRF I   L +Y  ++L  IV R +K
Sbjct: 180 LGEGVNARTLNLSLEPFTLIGATTRAGMLTAPLRDRFQIREHLGWYTRKELAEIVLRNSK 239

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257
              + V   +A  IA RSR TPR+A   L  VRD+A+      +   + +AAL  + ID 
Sbjct: 240 KLNIEVDPTSAGVIADRSRSTPRLANNRLLWVRDYAQSKTKGNVEASVCEAALDMIGIDH 299

Query: 258 MGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317
           +G D+ D  YL  + R F GGP G++ I+  ++   D +ED +EP++++   + RT RGR
Sbjct: 300 LGLDKQDRNYLDTLMRVFLGGPAGLDAIAHTMNVSSDTLEDEVEPFLLRSELLVRTRRGR 359

Query: 318 LLMPIAWQHLGIDIPHR 334
           L  P A++H+   +P R
Sbjct: 360 LATPKAFEHMKRQMPDR 376


>gi|87301991|ref|ZP_01084825.1| Holliday junction DNA helicase RuvB [Synechococcus sp. WH 5701]
 gi|87283559|gb|EAQ75514.1| Holliday junction DNA helicase RuvB [Synechococcus sp. WH 5701]
          Length = 359

 Score =  295 bits (755), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 163/319 (51%), Positives = 216/319 (67%), Gaps = 4/319 (1%)

Query: 13  SQEDADISL----LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           ++E+A +      LRPR L ++ GQ E    L + +EA + RAEALDHVL  GPPGLGKT
Sbjct: 35  AEEEAPLPNREDGLRPRRLSDYIGQSELKQVLGIAVEATRQRAEALDHVLLYGPPGLGKT 94

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           T+A V+A ELGV  R TS P + +  D+  LL NL   +VLFIDEIHRL+ + EE+LYPA
Sbjct: 95  TMALVLAEELGVRCRITSAPALERPRDIIGLLVNLRPNEVLFIDEIHRLNRVAEELLYPA 154

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           MEDF+LDL VG+G +AR+  + L+ FTL+ ATTR G L++PL+DRFG+  RL FY ++DL
Sbjct: 155 MEDFRLDLTVGKGTTARTRAVPLAPFTLVGATTRAGALSSPLRDRFGLIQRLEFYTVDDL 214

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           + IV+R A L GL +  EAA E+A R RGTPRIA RLLRRVRD A V     I   +   
Sbjct: 215 QAIVERAAGLIGLVLEAEAAVEVARRCRGTPRIANRLLRRVRDVASVQGEARIGPGLVAE 274

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL    +D  G D  D R L ++   +GGGPVG++T++AGL E    +E ++EP+++Q G
Sbjct: 275 ALSLHRVDDRGLDASDRRLLELLLGGYGGGPVGLDTLAAGLGEDPITLETVVEPFLLQLG 334

Query: 309 FIQRTPRGRLLMPIAWQHL 327
           F+QRTPRGR+    A +HL
Sbjct: 335 FLQRTPRGRVATEAARRHL 353


>gi|297170852|gb|ADI21871.1| holliday junction resolvasome, helicase subunit [uncultured
           verrucomicrobium HF0130_25O04]
          Length = 301

 Score =  293 bits (749), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 149/289 (51%), Positives = 205/289 (70%)

Query: 43  FIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTN 102
            + AA+ R EAL HVL  GPPGLGKTTLA ++ REL  + R TSGPVI K GDLA LLTN
Sbjct: 1   MVGAARKREEALKHVLLCGPPGLGKTTLAHIIGRELKRDVRITSGPVIDKPGDLAGLLTN 60

Query: 103 LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTR 162
           L++ D+LFIDEIHR+   VEE LY AMED+++D+M+ +GP+ARSV++ + RFTL+ ATTR
Sbjct: 61  LQEGDLLFIDEIHRIPKTVEEYLYSAMEDYRIDIMIDQGPNARSVRLEIPRFTLVGATTR 120

Query: 163 VGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
           VGLLT+P++ RF +  RL++Y+ +DL  IV R   L    +  E A E+A R+RGTPRIA
Sbjct: 121 VGLLTSPMRSRFTLQTRLDYYDRKDLTKIVLRSCNLLDCPIDQEGAEELAGRARGTPRIA 180

Query: 223 GRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGI 282
             L+   RD+A+      ITRE+A +AL  LAID  G D++D R L  +A+N+ GGPVG+
Sbjct: 181 NNLIHFTRDYADEKRDGKITREVACSALELLAIDAHGLDEMDKRILLTMAKNYKGGPVGL 240

Query: 283 ETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
            TI+ G+ E    +E++ EP++IQ+G+++RTP+GR+L P  W+   I  
Sbjct: 241 GTIAVGVGEEEHTLEEVHEPFLIQEGYLKRTPQGRILTPRGWEISDITP 289


>gi|257425765|ref|ZP_05602189.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257271459|gb|EEV03605.1| Holliday junction DNA helicase RuvB [Staphylococcus aureus subsp.
           aureus 55/2053]
          Length = 281

 Score =  293 bits (749), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 141/269 (52%), Positives = 197/269 (73%)

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
           F+ PPGLGKTTL+ ++A E+ VN R+ SGP + + GDLAA+L+ L+  DVLFIDEIHRLS
Sbjct: 5   FLAPPGLGKTTLSNIIANEMEVNIRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLS 64

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            +VEE+LYPAMEDF LD+++G+G  ARS++I+L  FTL+ ATTR G LT PL+DRFG+ +
Sbjct: 65  SVVEEVLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATTRAGSLTGPLRDRFGVHL 124

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           RL +Y   DLK I+ R A++ G  + +E+A E+A RSRGTPR+A RLL+RVRDF +V   
Sbjct: 125 RLEYYNESDLKEIIIRTAEVLGTGIDEESAIELAKRSRGTPRVANRLLKRVRDFQQVNED 184

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
           + I  E    AL  L +D+ G D +D + +  I + + GGPVG++TI+  + E R  IED
Sbjct: 185 EQIYIETTKHALGLLQVDQHGLDYIDHKMMNCIIKQYNGGPVGLDTIAVTIGEERITIED 244

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHL 327
           + EP++IQ+GF++RTPRGR   P+A++H 
Sbjct: 245 VYEPFLIQKGFLERTPRGRKATPLAYEHF 273


>gi|294507141|ref|YP_003571199.1| Holliday junction DNA helicase RuvB [Salinibacter ruber M8]
 gi|294343469|emb|CBH24247.1| Holliday junction DNA helicase RuvB [Salinibacter ruber M8]
          Length = 854

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 132/265 (49%), Positives = 187/265 (70%)

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127
           TTLA ++A E+G   R++SGPV+ K  D+A +LTNLE+ D+LFIDEIHRLS +VEE LY 
Sbjct: 580 TTLAHIIANEMGARIRTSSGPVLEKPADIAGVLTNLEEGDLLFIDEIHRLSSVVEEYLYS 639

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           AMED+++D+++ +GP+AR+V+I+L  FT++ ATTR GLLT PL+ RFGI  R ++Y  + 
Sbjct: 640 AMEDYRIDIVIDQGPNARTVQIDLPPFTMVGATTRKGLLTAPLRARFGIDFRYDYYTADL 699

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           L+ I QR A++  +  T + A EIA RSRGTPR+A RLLRR RDFAEV     IT+ IAD
Sbjct: 700 LQEITQRSARILDVETTPDGAYEIARRSRGTPRVANRLLRRTRDFAEVEGDGEITKAIAD 759

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
            AL  L +D+ G D +D R L  +  NF GGP G++ ++  + E    +E++ EPY+IQ+
Sbjct: 760 RALNALDVDEEGLDDMDARILLTLIDNFDGGPTGLKNLAVSVGEESGTLEEVYEPYLIQE 819

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIP 332
           GF++RTP+GR+ +  A+ H     P
Sbjct: 820 GFMERTPQGRVALQRAYDHFDRSSP 844



 Score = 77.4 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/76 (43%), Positives = 44/76 (57%), Gaps = 2/76 (2%)

Query: 4  REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           + L +     ++    LLRP++L+EF GQ +   NL VF++AA  R E LDHVL  GPP
Sbjct: 6  SDALKAEADRSDNDVEKLLRPQSLDEFVGQEKIKENLNVFMKAALQRGETLDHVLLSGPP 65

Query: 64 GLGK--TTLAQVVARE 77
          GLGK  T  + V   E
Sbjct: 66 GLGKCITHDSLVFTDE 81


>gi|218513560|ref|ZP_03510400.1| Holliday junction DNA helicase RuvB [Rhizobium etli 8C-3]
          Length = 263

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 192/249 (77%), Positives = 222/249 (89%)

Query: 85  TSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSA 144
           TSGPVIAKAGDLAALLTNLE+RDVLFIDEIHRL+  VEEILYPAMEDFQLDL++GEGP+A
Sbjct: 1   TSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLNPAVEEILYPAMEDFQLDLIIGEGPAA 60

Query: 145 RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVT 204
           RSVKI+LS+FTL+AATTR+GLLT PL+DRFGIP+RL+FY +E+L+ IV+RGA+L  L +T
Sbjct: 61  RSVKIDLSKFTLVAATTRLGLLTTPLRDRFGIPVRLSFYTVEELELIVRRGARLMNLPMT 120

Query: 205 DEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLD 264
           +E A EIA R+RGTPRIAG  +RRVRDFAEVA A+ +TREIAD AL RL +D +GFDQLD
Sbjct: 121 EEGAREIARRARGTPRIAGGQMRRVRDFAEVARAEAVTREIADEALTRLLVDNVGFDQLD 180

Query: 265 LRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAW 324
            RYL MIA NFGGGPVGIETI+AGLSEPRDAIED+IEPYMIQQGFIQRTPRGR+L  IAW
Sbjct: 181 KRYLNMIAVNFGGGPVGIETIAAGLSEPRDAIEDIIEPYMIQQGFIQRTPRGRVLTAIAW 240

Query: 325 QHLGIDIPH 333
           +HLG+  P 
Sbjct: 241 KHLGMQPPK 249


>gi|315452845|ref|YP_004073115.1| Holliday junction ATP-dependent DNA helicase [Helicobacter felis
           ATCC 49179]
 gi|315131897|emb|CBY82525.1| Holliday junction ATP-dependent DNA helicase [Helicobacter felis
           ATCC 49179]
          Length = 332

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 155/329 (47%), Positives = 217/329 (65%), Gaps = 2/329 (0%)

Query: 6   GLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
            L+S      E+ +   LRP   E++ GQ +    L+V I A   R + LDHVLF GPPG
Sbjct: 3   RLVSVEALNLEEQEHLSLRPSLWEDYIGQEQIKKLLQVSISATLKRQDTLDHVLFFGPPG 62

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           LGKTTL+ ++A+EL  N + T+ P+I K GDLAALLTNL  +D+LFIDEIHRLS  +EE+
Sbjct: 63  LGKTTLSHLIAKELNANIKVTTAPMIEKTGDLAALLTNLNPKDILFIDEIHRLSPAIEEV 122

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           LYPAMEDF+LD+++G   +A+++KI+L+ FTLI ATTR GLL+NPL++RFG+  R+ FY 
Sbjct: 123 LYPAMEDFRLDIIIGSKAAAQTIKIDLAPFTLIGATTRAGLLSNPLRERFGMHFRMQFYS 182

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           IE+L TI+ R +      + DEA+ EIA RSRGTPRIA RLLRRVRDFA+ A+   I+ +
Sbjct: 183 IEELATIITRASVKLQKEIEDEASIEIAKRSRGTPRIALRLLRRVRDFADHANELCISLQ 242

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
               AL  L ++  GFD L       +  N     +G+ TI+A L E    IE++IEP++
Sbjct: 243 TTLFALEELGVNAHGFDAL-DLLYLNLLANAKNKALGLNTIAASLHEDESTIEEVIEPFL 301

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +  G+++RT +GR+     ++ L +  P 
Sbjct: 302 LANGYLERTAKGRIATLKTYETLKLTCPR 330


>gi|312977889|ref|ZP_07789635.1| holliday junction DNA helicase RuvB [Lactobacillus crispatus
           CTV-05]
 gi|310895196|gb|EFQ44264.1| holliday junction DNA helicase RuvB [Lactobacillus crispatus
           CTV-05]
          Length = 325

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 153/322 (47%), Positives = 201/322 (62%), Gaps = 23/322 (7%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
              +E      LRP+TL+++ GQ      + ++I+AA+ R EALDHVL  GPPGLGKTTL
Sbjct: 15  ENPEEQQMELSLRPQTLDQYLGQKRVKKEMSIYIKAARQRDEALDHVLLYGPPGLGKTTL 74

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           A V+A ELGV+ +STSGP I KAGDL ALL++L+  DVLFIDEIHRL+  VEE+LY AME
Sbjct: 75  AFVIANELGVHLKSTSGPAIEKAGDLVALLSDLDPGDVLFIDEIHRLAKPVEEVLYSAME 134

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           D+ +D+++GEG +  +V + L  FTLI ATT  G L+ PL+DRFGI   + +Y I++L+ 
Sbjct: 135 DYYIDIVIGEGQTTHAVHVPLPPFTLIGATTLAGQLSAPLRDRFGIVEHMQYYTIDELEQ 194

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           IV R + +   ++  EAA E+A RSRGTPR+A RLL+RVRDFAEV   KTI+ E  + AL
Sbjct: 195 IVLRSSDVFHTSIAPEAAHELARRSRGTPRVANRLLKRVRDFAEVKGEKTISLETTEGAL 254

Query: 251 LRLAIDKMGFDQLDLRYLTMIARN--------FGGGPVGIETISAGLSEPRDAIEDLIEP 302
            +L +D  G DQ D R L  I R         FG   + +  I          IE L EP
Sbjct: 255 KQLQVDDEGLDQTDRRLLRTIDRKDIMVVLLVFGLWQLMLVKIWK-------TIESLYEP 307

Query: 303 YMIQQGFIQRTPRGRLLMPIAW 324
           Y++Q GF             AW
Sbjct: 308 YLLQHGFY--------FTHAAW 321


>gi|330984326|gb|EGH82429.1| Holliday junction DNA helicase RuvB [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 330

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 139/328 (42%), Positives = 197/328 (60%), Gaps = 7/328 (2%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L S ++    A    LRPR L +F GQ      L +F+ AA+ R E +DH L  GPPGLG
Sbjct: 4   LSSTDLEAPIASDKALRPRRLAQFQGQPHLIDQLDIFLSAARLRGEMIDHCLLYGPPGLG 63

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTTLA ++A E+   F ++SGP++ K  D+ +LL       V+FIDEIHR+   VEE+LY
Sbjct: 64  KTTLAGIIAEEMDHEFLTSSGPLLQKPADVVSLLIQPTAPTVIFIDEIHRMPTQVEELLY 123

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            AMED  +D++       RS++++L  FTLI ATTR G L+ PL+DRFGI +RLN Y + 
Sbjct: 124 SAMEDQHVDILTD---DRRSIRLHLEPFTLIGATTRQGSLSAPLRDRFGIHLRLNLYGLP 180

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
            L  +V   A+  GL + +  A  IA RSRGTPRIA + LRR+RD+ +     T   +  
Sbjct: 181 QLGQVVLSAAQQLGLPLKESQALIIASRSRGTPRIALKNLRRIRDYFQARGEGTGVDDTT 240

Query: 247 DA-ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
            A AL  + +D+ G +Q D  Y+  +   F G PVG+ +++A L E    +ED IEPY+I
Sbjct: 241 IAEALNFMGLDENGLNQADRDYINALINTFSGRPVGLSSLAAALGEDVGTLEDSIEPYLI 300

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           Q+G++ RT +GR+ MP A++      P 
Sbjct: 301 QEGYVSRTSKGRVAMPKAYKAF---PPQ 325


>gi|78780093|ref|YP_398205.1| Holliday junction DNA helicase B [Prochlorococcus marinus str. MIT
           9312]
 gi|97190199|sp|Q318C6|RUVB_PROM9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|78713592|gb|ABB50769.1| Holliday junction DNA helicase subunit RuvB [Prochlorococcus
           marinus str. MIT 9312]
          Length = 352

 Score =  286 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 142/327 (43%), Positives = 210/327 (64%), Gaps = 5/327 (1%)

Query: 6   GLLSRNVSQEDA---DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
            L+   +  E+    +++L RP T +EF GQ +  S+L++ I+A+  R E L+H L  G 
Sbjct: 21  RLVDSKIIPEEKRKNNLNLARPITFQEFIGQEKLKSSLRIAIDASIYRKEPLEHTLLYGQ 80

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++A+E+    R  + P I +  D+  LL  L++ +VLFIDEIHRL+ + E
Sbjct: 81  PGLGKTTLAFLIAKEMNTKCRIATAPAIERPRDIVGLLLGLKEGEVLFIDEIHRLNRLTE 140

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LY AMEDF+LDL +G    AR   INL RFTL+ ATT++  ++ PL+DRFGI  ++ F
Sbjct: 141 ELLYSAMEDFRLDLTMGANRGARCRTINLPRFTLVGATTKLASISAPLRDRFGISQKIEF 200

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE-VAHAKTI 241
           Y  ++LK I+   ++L    V DEA+  +A  SRGTPRIA RLLRRVRD+A+ V     I
Sbjct: 201 YTCDELKQIIDNFSRLISFNVDDEASSHLAKISRGTPRIALRLLRRVRDYAQVVKKTNVI 260

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           +  +   AL    ID+ G D +D +YL+ + +N    P G+++I+AGL +    +E ++E
Sbjct: 261 SVNLIKKALNSYQIDEKGLDYVDRQYLSFLNQN-KNIPTGLDSIAAGLGDDSSMLEFVVE 319

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLG 328
           PY+IQ GF+ RTPRGRLL  +  +++ 
Sbjct: 320 PYLIQIGFLTRTPRGRLLTALGKKYID 346


>gi|145640254|ref|ZP_01795838.1| Holliday junction DNA helicase B [Haemophilus influenzae R3021]
 gi|145274840|gb|EDK14702.1| Holliday junction DNA helicase B [Haemophilus influenzae 22.4-21]
          Length = 263

 Score =  285 bits (730), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 148/250 (59%), Positives = 190/250 (76%)

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           +GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS  +EE+LYPAMED+QLD+M
Sbjct: 1   MGVNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIM 60

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
           +GEGP+ARS+K++L  FTL+ ATTR G LT+PL+DRFGI  RL FY +EDL +IV R A 
Sbjct: 61  IGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVARSAD 120

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257
              L +  +AA E+A RSRGTPRIA RLLRRVRD+A+V +   I+  +A  AL  L +D 
Sbjct: 121 CLNLELEQQAAFEVARRSRGTPRIANRLLRRVRDYADVRNGGIISINVAKQALSMLDVDD 180

Query: 258 MGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317
            GFD LD + L+ +   F GGPVG++ ++A + E RD IED++EPY+IQQGF+QRTPRGR
Sbjct: 181 AGFDYLDRKLLSAVIERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTPRGR 240

Query: 318 LLMPIAWQHL 327
           +     ++H 
Sbjct: 241 IATSQTYRHF 250


>gi|167912492|ref|ZP_02499583.1| Holliday junction DNA helicase B [Burkholderia pseudomallei 112]
          Length = 272

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 155/256 (60%), Positives = 193/256 (75%)

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           +GVN R TSGPV+ +AGDLAALLTNLE  DVLFIDEIHRLS +VEEILYPA+ED+Q+D+M
Sbjct: 1   MGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDYQIDIM 60

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
           +GEGP+ARSVK++L  FTL+ ATTR G+LTNPL+DRFGI  RL FY+ E L  IV+R A 
Sbjct: 61  IGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYDAEQLSRIVRRSAA 120

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257
           L    +    A EIA RSRGTPRIA RLLRRVRD+AEV     IT  +ADAAL  L +D 
Sbjct: 121 LLNAQIDPAGALEIAKRSRGTPRIANRLLRRVRDYAEVKADGNITAAVADAALAMLDVDP 180

Query: 258 MGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317
           +GFD +D + L  I   F GGPVG++ ++A + E RD IED++EPY+IQQGF+QRTPRGR
Sbjct: 181 VGFDLMDRKLLEAILHKFDGGPVGVDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTPRGR 240

Query: 318 LLMPIAWQHLGIDIPH 333
           +   + ++H G+  P 
Sbjct: 241 VATLLTYRHFGLSAPD 256


>gi|123969357|ref|YP_001010215.1| Holliday junction DNA helicase RuvB [Prochlorococcus marinus str.
           AS9601]
 gi|166231538|sp|A2BTJ7|RUVB_PROMS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|123199467|gb|ABM71108.1| Holliday junction DNA helicase RuvB [Prochlorococcus marinus str.
           AS9601]
          Length = 352

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 146/328 (44%), Positives = 215/328 (65%), Gaps = 4/328 (1%)

Query: 9   SRNVSQE--DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           S+N+ +E  + +++L RP  L+EF GQ +  S+L+V I+A+  R E L+H L  G PGLG
Sbjct: 25  SKNIPEEKRNNNLNLARPLNLKEFIGQEQLKSSLRVAIDASIIRKEPLEHTLLYGQPGLG 84

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           KTTLA ++A EL    R  + P I +  D+  LL  L++ +VLFIDEIHRL+ + EE+LY
Sbjct: 85  KTTLAFLIAHELNTKCRIATAPAIERPRDIVGLLLGLKEGEVLFIDEIHRLNRLTEELLY 144

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            AMEDF+LDL +G    AR   INL RFTLI ATT++  ++ PL+DRFGI  ++ FY  +
Sbjct: 145 SAMEDFRLDLTMGANRGARCRTINLPRFTLIGATTKLASISAPLRDRFGISQKIEFYTCD 204

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE-VAHAKTITREI 245
           +LK I+   ++L  L + DEA+ ++A  SRGTPRIA RLLRRVRD+A+ V    TI+  +
Sbjct: 205 ELKQIIVNFSRLINLNLEDEASYDLAKISRGTPRIALRLLRRVRDYAQVVMKTNTISVNL 264

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
              AL    ID+ G D LD  YL+ + +N    P+G+++I++GL +    +E ++EPY+I
Sbjct: 265 IKKALNSYQIDEKGLDSLDRHYLSFLNQN-NNIPIGLDSIASGLGDDSSMLEFVVEPYLI 323

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           + GF+ RTPRGRLL  +  +++     +
Sbjct: 324 KIGFLTRTPRGRLLTALGKKYIDSKDDN 351


>gi|123967037|ref|YP_001012118.1| Holliday junction DNA helicase RuvB [Prochlorococcus marinus str.
           MIT 9515]
 gi|166231537|sp|A2BZ00|RUVB_PROM5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|123201403|gb|ABM73011.1| Holliday junction DNA helicase RuvB [Prochlorococcus marinus str.
           MIT 9515]
          Length = 352

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 137/313 (43%), Positives = 207/313 (66%), Gaps = 2/313 (0%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           + +++++RP + +EF GQ +  S+LK+ I+A+K R EAL+H L  G PGLGKTTLA +++
Sbjct: 34  NKNLNIVRPTSFKEFIGQEQIKSSLKIAIDASKYRKEALEHTLLYGQPGLGKTTLALLIS 93

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
            E+    R  S P I +  D+  LL  L++ ++LFIDEIHRL+ + EE+LY AMEDF+LD
Sbjct: 94  YEMNSKCRVASAPSIERPRDIVGLLLGLKEGEILFIDEIHRLNKLTEELLYSAMEDFRLD 153

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           L +G    AR   INL +FTLI ATT++  ++ PL+DRFG+  ++ FY  ++LK I+   
Sbjct: 154 LTMGANRGARCRTINLPKFTLIGATTKLASISAPLRDRFGLCHKIEFYSNDELKQIIFNF 213

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV-AHAKTITREIADAALLRLA 254
           + L  L +  +A C +A  SRGTPRIA RLL+RVRD+A+V      I+ EI + AL    
Sbjct: 214 SNLINLQLDSDACCSLAKISRGTPRIALRLLKRVRDYAQVMKKTNKISIEIIEKALDSQK 273

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           ID  G D +D ++L+ + +     P+G+++I+AG+ E    +E ++EPY+IQ GFI RTP
Sbjct: 274 IDNRGLDNVDRKFLSFL-KLNNNNPIGLDSIAAGMGEESSMLEFVVEPYLIQIGFIMRTP 332

Query: 315 RGRLLMPIAWQHL 327
           RGR L  +  +++
Sbjct: 333 RGRKLTSLGKKYI 345


>gi|329296287|ref|ZP_08253623.1| Holliday junction DNA helicase RuvB [Plautia stali symbiont]
          Length = 266

 Score =  283 bits (723), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 154/266 (57%), Positives = 203/266 (76%), Gaps = 1/266 (0%)

Query: 1   MMDREGLLS-RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S  + ++E++    +RP+ L E+ GQ +    + +FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRLVSGSSFTEEESLDRAIRPKLLTEYVGQPQVREQMGIFIQAAKLRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPLDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+G+GP+ARS+K++L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGDGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY + DL+ IV R A   GL +++E A E+A R+RGTPRIA RLLRRVRDFAEV  + 
Sbjct: 181 LEFYNVPDLQHIVGRSAACLGLTLSEEGALEVARRARGTPRIANRLLRRVRDFAEVRASG 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDL 265
            ++ E+A +AL  L +D  GFD +D 
Sbjct: 241 NMSGEVAASALDMLNVDNQGFDYMDR 266


>gi|157414222|ref|YP_001485088.1| Holliday junction DNA helicase RuvB [Prochlorococcus marinus str.
           MIT 9215]
 gi|172047297|sp|A8G7C1|RUVB_PROM2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|157388797|gb|ABV51502.1| Holliday junction DNA helicase RuvB [Prochlorococcus marinus str.
           MIT 9215]
          Length = 352

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 144/327 (44%), Positives = 207/327 (63%), Gaps = 5/327 (1%)

Query: 6   GLLSRNVSQEDADISLL---RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
            L+   V  E+   + L   RP   +EF GQ +  S+L++ I+A+  R E L+H L  G 
Sbjct: 21  RLVDSKVIPEEKKNNNLNLARPLNFKEFIGQEQLKSSLRIAIDASIFRKEPLEHTLLYGQ 80

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++A EL    R  + P I +  D+  LL  L++ +VLFIDEIHRL+ + E
Sbjct: 81  PGLGKTTLAFLIAHELKTKCRIATAPAIERPRDIVGLLLGLKEGEVLFIDEIHRLNRLTE 140

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LY AMEDF+LDL +G    AR   INL RFTLI ATT++  ++ PL+DRFGI  ++ F
Sbjct: 141 ELLYSAMEDFRLDLTMGANRGARCRTINLPRFTLIGATTKLASISAPLRDRFGISQKIEF 200

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE-VAHAKTI 241
           Y  ++LK I+   ++L  L + DEA+ ++A  SRGTPRIA RLLRRVRD+A+ V     I
Sbjct: 201 YTYDELKQIIVNFSRLINLNLDDEASYDLAKISRGTPRIALRLLRRVRDYAQVVMKTNNI 260

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           +  +   AL    ID+ G D LD  YL  + +N    P+G+++I+AGL +    +E ++E
Sbjct: 261 SVNLIKKALNSYQIDEKGLDSLDRNYLFFLNQN-KNIPIGLDSIAAGLGDDSSMLEFVVE 319

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLG 328
           PY+I+ GF+ RTPRGRLL  +  +++ 
Sbjct: 320 PYLIKIGFLTRTPRGRLLTALGKKYID 346


>gi|238924019|ref|YP_002937535.1| Holliday junction DNA helicase B [Eubacterium rectale ATCC 33656]
 gi|238875694|gb|ACR75401.1| Holliday junction DNA helicase B [Eubacterium rectale ATCC 33656]
          Length = 255

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 123/250 (49%), Positives = 178/250 (71%)

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           +G   + TSGP I K G++AA+L  L + D+LF+DEIHRL+  VEE+LYPAMED+ +D+M
Sbjct: 1   MGTKIKVTSGPAIGKPGEMAAILNGLSEGDILFVDEIHRLNRQVEEVLYPAMEDYAIDIM 60

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
           +G+G SA+S++ NL +FTL+ ATTR G+L+ PL+DRFG+   + FY +++LK I+   AK
Sbjct: 61  IGKGESAKSIRFNLPKFTLVGATTRAGMLSAPLRDRFGVVNHMEFYTVDELKHIIVNSAK 120

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257
           + G+ + D+ A E+A RSRGTPR+A RLL+RVRDFA+V +   IT ++A  AL  L +DK
Sbjct: 121 VLGVEIDDKGAYEMARRSRGTPRLANRLLKRVRDFAQVKYDGKITYDVASFALDLLEVDK 180

Query: 258 MGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317
            G D  D   L  I   F GGPVG++T++A + E    IED+ EPY+++ GFI RTP+GR
Sbjct: 181 YGLDLNDRNILLTIIDKFAGGPVGLDTLAAAIGEDAGTIEDVYEPYLVKNGFINRTPKGR 240

Query: 318 LLMPIAWQHL 327
           +   +A++H 
Sbjct: 241 VATELAFEHF 250


>gi|126697145|ref|YP_001092031.1| Holliday junction DNA helicase RuvB [Prochlorococcus marinus str.
           MIT 9301]
 gi|166231535|sp|A3PFA5|RUVB_PROM0 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|126544188|gb|ABO18430.1| Holliday junction DNA helicase RuvB [Prochlorococcus marinus str.
           MIT 9301]
          Length = 352

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 145/327 (44%), Positives = 212/327 (64%), Gaps = 5/327 (1%)

Query: 6   GLLSRNVSQEDA---DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
            L+   +  E+    +++L RP TL+EF GQ +  S+L++ I+A+  R E L+H+L  G 
Sbjct: 21  RLVDSKIIPEEKRNNNLNLARPLTLKEFIGQEQLKSSLRIAIDASIFRKEPLEHILLYGQ 80

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++A EL    +  + P I +  D+  LL  L++ +VLFIDEIHRL+ + E
Sbjct: 81  PGLGKTTLAFLIAHELNTKCKIATAPAIERPRDIVGLLLGLKEGEVLFIDEIHRLNRLTE 140

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LY AMEDF+LDL +G     R   INL RFTLI ATT++  ++ PL+DRFGI  ++ F
Sbjct: 141 ELLYSAMEDFRLDLTMGANKGTRCRTINLPRFTLIGATTKLASISAPLRDRFGISQKIEF 200

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE-VAHAKTI 241
           Y  ++LK I+   ++L  L + DEA+ ++A  SRGTPRIA RLLRRVRD+A+ V    TI
Sbjct: 201 YNYDELKQILLNFSRLINLNLDDEASYDLAKISRGTPRIALRLLRRVRDYAQVVMKTNTI 260

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           +  +   AL    ID  G D LD  YL+ I +N    P+G+++I+AGL +    +E ++E
Sbjct: 261 SVNLIKKALNSYQIDDKGLDSLDRHYLSFINQN-NNIPIGLDSIAAGLGDDSSMLEFVVE 319

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLG 328
           PY+I+ GF+ RTPRGRLL  +  +++ 
Sbjct: 320 PYLIKIGFLTRTPRGRLLTALGKKYID 346


>gi|254525738|ref|ZP_05137790.1| Holliday junction DNA helicase RuvB [Prochlorococcus marinus str.
           MIT 9202]
 gi|221537162|gb|EEE39615.1| Holliday junction DNA helicase RuvB [Prochlorococcus marinus str.
           MIT 9202]
          Length = 352

 Score =  280 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 144/327 (44%), Positives = 209/327 (63%), Gaps = 5/327 (1%)

Query: 6   GLLSRNVSQEDA---DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
            L+   V  E+    +++L RP   +EF GQ +  S+L++ I+A+  R E L+H L  G 
Sbjct: 21  RLVDSKVIPEEKRNNNLNLARPLNFKEFIGQEQLKSSLRIAIDASIFRKEPLEHTLLYGQ 80

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA ++A EL    R  + P I +  D+  LL  L++ +VLFIDEIHRL+ + E
Sbjct: 81  PGLGKTTLAFLIAHELKTKCRIATAPAIERPRDIVGLLLGLKEGEVLFIDEIHRLNRLTE 140

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LY AMEDF+LDL +G    AR   INL RFTLI ATT++  ++ PL+DRFGI  ++ F
Sbjct: 141 ELLYSAMEDFRLDLTMGANRGARCRTINLPRFTLIGATTKLASISAPLRDRFGISQKIEF 200

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE-VAHAKTI 241
           Y  ++LK I+   ++L  L + DEA+ ++A  SRGTPRIA RLLRRVRD+A+ V     I
Sbjct: 201 YTYDELKQIIVNFSRLINLNLDDEASYDLAKISRGTPRIALRLLRRVRDYAQVVMKTNNI 260

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           +  +   AL    ID+ G D LD  YL  + +N    P+G+++I+AGL +    +E ++E
Sbjct: 261 SVNLIKKALNSYQIDEKGLDSLDRNYLFFLNQN-KNIPIGLDSIAAGLGDDSSMLEFVVE 319

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLG 328
           PY+I+ GF+ RTPRGRLL  +  +++ 
Sbjct: 320 PYLIKIGFLTRTPRGRLLTALGKKYID 346


>gi|33862171|ref|NP_893732.1| Holliday junction DNA helicase B [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|44888407|sp|Q7UZP3|RUVB_PROMP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|33634389|emb|CAE20074.1| Holliday junction DNA helicase RuvB [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 352

 Score =  279 bits (713), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 137/326 (42%), Positives = 207/326 (63%), Gaps = 5/326 (1%)

Query: 6   GLLSRNVSQEDA---DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
            L+   +  E+    +++L RP + +EF GQ +  S+LK+ IEA+K R EAL+H L  G 
Sbjct: 21  RLVDSKIIAEEKINKNLNLARPNSFKEFIGQEQIKSSLKIAIEASKYRKEALEHTLLYGQ 80

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKTTLA +++ E+    +  S P + +  D+  LL  L++ ++LFIDEIHRL+ + E
Sbjct: 81  PGLGKTTLALLISYEMNTKCKVASAPSLERPRDIVGLLLGLKEGEILFIDEIHRLNKLTE 140

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LY AMEDF+LDL +G     R   INL +FTLI ATT++  ++ PL+DRFG+  ++  
Sbjct: 141 ELLYSAMEDFRLDLTMGANRGTRCRTINLPKFTLIGATTKLASISAPLRDRFGLCHKIEL 200

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV-AHAKTI 241
           Y  ++L  I+   A L  L + ++A   +A  SRGTPRIA RLL+RVRD+A+V  +   I
Sbjct: 201 YSNDELHQIIFNFATLINLQLENDACSALAKISRGTPRIALRLLKRVRDYAQVIKNTNKI 260

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           + EI + AL    ID  G D +D ++L+ +       P+G+++I+AGL E    +E ++E
Sbjct: 261 SLEIIEKALNSQKIDNKGLDNIDRKFLSFL-NLNNNHPIGLDSIAAGLGEESSMLEFVVE 319

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHL 327
           PY+IQ GFI RTPRGR L  +  +++
Sbjct: 320 PYLIQIGFIMRTPRGRKLTSLGKKYI 345


>gi|147919261|ref|YP_687003.1| Holliday junction DNA helicase RuvB [uncultured methanogenic
           archaeon RC-I]
 gi|110622399|emb|CAJ37677.1| holliday junction resolvasome, helicase subunit [uncultured
           methanogenic archaeon RC-I]
          Length = 337

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 143/250 (57%), Positives = 184/250 (73%)

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
               F S  GP I +AGDLAA+LTNL++ DVLFIDEIHRLS +VEEILY AMEDF++D++
Sbjct: 82  WARTFASPQGPAIERAGDLAAILTNLKEGDVLFIDEIHRLSHVVEEILYSAMEDFEIDII 141

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
           +G+GPSARS+++ L RFTL+ ATTR G+L+ PL+DRFG+ +R  FY  EDLKTI+ R AK
Sbjct: 142 IGKGPSARSIRLELPRFTLVGATTRAGMLSPPLRDRFGMSLRFEFYTPEDLKTIIDRSAK 201

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257
           +  + +T + + EIA RSRGTPRIA RLLRRVRDFA V     I   IA  +L +L +D 
Sbjct: 202 ILNMEITPDGSMEIAARSRGTPRIANRLLRRVRDFAHVEKKTVIDTGIARKSLDKLDVDF 261

Query: 258 MGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317
           +G D +D R L  I +++GGGPVG ET++  +SE  D IED+ EPY+IQ GFI RTPRGR
Sbjct: 262 LGLDAMDRRILKTIIKDYGGGPVGAETLAVSVSEETDTIEDVYEPYLIQIGFINRTPRGR 321

Query: 318 LLMPIAWQHL 327
           +  P A +HL
Sbjct: 322 MATPAAVEHL 331


>gi|15613788|ref|NP_242091.1| Holliday junction DNA helicase RuvB [Bacillus halodurans C-125]
 gi|10173841|dbj|BAB04944.1| holliday junction DNA helicase (DNA-binding protein) [Bacillus
           halodurans C-125]
          Length = 253

 Score =  276 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 135/253 (53%), Positives = 193/253 (76%)

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R+TSGP I + GDLAA+LT LE  DVLFIDEIHRL+ +VEE+LYPAMED+ +D+++G+G
Sbjct: 1   MRTTSGPAIERPGDLAAILTALEPGDVLFIDEIHRLNRMVEEVLYPAMEDYCIDIVIGKG 60

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARSV+++L  FTL+ ATTR G+L++PL+DRFG+  RL +Y +E+L TI++R A +   
Sbjct: 61  PTARSVRLDLPPFTLVGATTRAGMLSSPLRDRFGVMARLEYYNVEELTTIIERTATIFDT 120

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  +A+ EIA RSRGTPRIA RLLRRVRDFA+V+    I+   A  +L RL +D++G D
Sbjct: 121 ELERDASIEIARRSRGTPRIANRLLRRVRDFAQVSGDMRISSSRAIESLERLQVDRLGLD 180

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
            +D + +  I   F GGPVG+ETISA + E  D IE++ EPY++Q GF+QRTPRGR++ P
Sbjct: 181 HIDHKLIKGIMTKFNGGPVGLETISATIGEETDTIEEVYEPYLLQIGFLQRTPRGRVVTP 240

Query: 322 IAWQHLGIDIPHR 334
           +A++H  +++P++
Sbjct: 241 LAYEHFNMEVPNK 253


>gi|167948215|ref|ZP_02535289.1| holliday junction DNA helicase RuvB [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 285

 Score =  276 bits (705), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 159/280 (56%), Positives = 194/280 (69%), Gaps = 1/280 (0%)

Query: 3   DREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           +   L+    S +DA I   +RP  L ++ GQ   C  +++FIEAA+ R EALDHVL  G
Sbjct: 4   EDRSLIEGAESGDDAVIDRAIRPTRLGDYVGQPSVCEQMEIFIEAARRREEALDHVLIFG 63

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+GVN R TSGPV+ K GDLAALLTNLE  DVLF+DEIHRLS +V
Sbjct: 64  PPGLGKTTLAHIIANEMGVNLRQTSGPVLEKPGDLAALLTNLEPHDVLFVDEIHRLSPVV 123

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPA+EDFQLD+M+GEGP+ARS+K++L  FTL+ ATTR GLLT+PL+DRFGI  RL 
Sbjct: 124 EEVLYPALEDFQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGLLTSPLRDRFGIVQRLE 183

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY   DL  IV R A +  +      A EIA RSRGTPRIA RLLRRVRD+A+V     +
Sbjct: 184 FYSAADLAQIVARSAGILNIGSDAAGAMEIARRSRGTPRIANRLLRRVRDYAQVKGDGRV 243

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVG 281
             E+AD AL  L +D  GFD +D R L    R     P G
Sbjct: 244 GAELADRALRMLKVDGNGFDAMDRRLLLGGDRKVRRRPGG 283


>gi|4586354|dbj|BAA76366.1| ruvB protein [Deinococcus radiodurans]
          Length = 311

 Score =  271 bits (694), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 146/314 (46%), Positives = 197/314 (62%), Gaps = 17/314 (5%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           ++  +   + LRP+TL E+ GQ +    L V+++AA+ R EALDH L  GPPGLGKTTLA
Sbjct: 1   MTAPENLDAALRPKTLTEYVGQEKLKDKLGVYLQAARGRREALDHTLLFGPPGLGKTTLA 60

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            ++A ELGVN R TSGP I K GDLA L  +LE+ DVLFIDEIHRL  + EE LYPAMED
Sbjct: 61  HIIAYELGVNIRVTSGPAIEKPGDLAILTNSLEEGDVLFIDEIHRLGRVAEEHLYPAMED 120

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           F+LD+++G+GP+AR++++ L RFTL+ ATTR GL+T P++  FGI   L +Y  E++ T 
Sbjct: 121 FKLDIVLGQGPAARTIELPLPRFTLVGATTRPGLITAPMRRAFGIIEHLEYYTAEEIATN 180

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           + R A+L G  + +EA  EI  RSRGT RIA             A   T   +   A   
Sbjct: 181 LLRDARLLGFGLDEEAGLEIGARSRGTMRIAKACC------GACATTPTWRAKPPSAWNA 234

Query: 252 RLAIDKMGFDQLDLRYLTMIARN-------FGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           + A+DK+G D   L   T              GGPVG++T++  +SE    +ED+ EPY+
Sbjct: 235 QSALDKLGLDSAGLG--TTRQEVPRNPDSPLCGGPVGVDTLATAISEDALTLEDVYEPYL 292

Query: 305 IQQGFIQRT--PRG 316
           IQ GFI+R+  PRG
Sbjct: 293 IQLGFIKRSTWPRG 306


>gi|71893770|ref|YP_279216.1| Holliday junction DNA helicase RuvB [Mycoplasma hyopneumoniae J]
 gi|72080740|ref|YP_287798.1| Holliday junction DNA helicase RuvB [Mycoplasma hyopneumoniae 7448]
          Length = 312

 Score =  264 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 113/306 (36%), Positives = 185/306 (60%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP + E F GQ +    L++ I +++ R ++LDH+LF GPPG GKTTLA +VA  L   
Sbjct: 1   MRPSSFENFIGQKKLVETLQILISSSQKRKQSLDHILFYGPPGTGKTTLANIVANVLEAK 60

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            +   GP++ K  D+ A+L N+    ++FIDEIH ++  +EE+LY AME+F +DL +G  
Sbjct: 61  IKYVQGPLLEKKSDVLAVLANISPDTIIFIDEIHGINKNIEELLYSAMEEFVIDLQIGVD 120

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
              + +++ L +FTLI A+T++  ++ PLQ+RFG   ++  Y +ED+  I++  + +  L
Sbjct: 121 GERKIMRMKLPQFTLIGASTKLAQISTPLQNRFGYVAKIVDYTLEDMIQIIRNSSAVLKL 180

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  E    IA  S  TPRIA  LL+R+RDFA V +AK I ++I +     + I   G  
Sbjct: 181 KMNTEIIKYIASFSNNTPRIANNLLKRIRDFALVLNAKRIDKDIVNKTFDSIGIYNQGLS 240

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           Q+++ YL ++ + F G  V ++ I+  L E R  I ++IEP +I++  I++T RGR +  
Sbjct: 241 QINIEYLNLLVKIFKGKSVALDVIANVLKEHRQTIINIIEPPLIEKELIEKTSRGRRITK 300

Query: 322 IAWQHL 327
               +L
Sbjct: 301 KGRDYL 306


>gi|213859992|ref|ZP_03385696.1| Holliday junction DNA helicase B [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
          Length = 240

 Score =  264 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 149/240 (62%), Positives = 188/240 (78%), Gaps = 1/240 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S   +  ED     +RP+ L E+ GQ +  S +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRLISAGATIAEDVADRAIRPKLLAEYVGQPQVRSQMEIFIQAAKRRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L FY++ DL+ IV R A+  GL ++D+ A E+A R+RGTPRIA RLLRRVRDFAEV H  
Sbjct: 181 LEFYQVPDLQHIVGRSARHMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG 240


>gi|304373059|ref|YP_003856268.1| Holliday junction ATP-dependent DNA helicase ruvB [Mycoplasma
           hyorhinis HUB-1]
 gi|304309250|gb|ADM21730.1| Holliday junction ATP-dependent DNA helicase ruvB [Mycoplasma
           hyorhinis HUB-1]
          Length = 317

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 107/306 (34%), Positives = 184/306 (60%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+  E+F GQ +    LKV I ++K R + LDH+LF G PG GKTTLA ++A E    
Sbjct: 7   IRPKNFEQFIGQQKLVETLKVLISSSKKRKKPLDHILFYGSPGTGKTTLANILATETQSK 66

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            +   GP++ K  D+ ++L N+E   ++FIDEIH ++  +EE+LY AME+F +D+ +G  
Sbjct: 67  IKYIQGPLLEKKSDILSMLANVEKGHIIFIDEIHSINKNIEELLYSAMEEFVIDIQIGVE 126

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
             ++ +++ L  FTL+ A+T++  ++ PL++RFG+  ++  Y  E++K I+Q  + +  +
Sbjct: 127 GESKIMRMKLPEFTLVGASTKISSISLPLKNRFGLTAKIYEYTSEEMKKIIQNSSNILNI 186

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +++E    +   +  TPRIA  LL+R+RDFA V   KTI+++I D     + I   G +
Sbjct: 187 EISEELVHYVVDFTNKTPRIANNLLKRIRDFAIVEDTKTISKDIIDKTFNGIGIFLNGLN 246

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             ++ YL ++A  F    V ++ I   + E ++ I + IEP ++Q   I++TPRGR +  
Sbjct: 247 LQNIEYLNLLANVFKRKTVSLDVICGIMKETKENIINNIEPILLQLELIEKTPRGRKITQ 306

Query: 322 IAWQHL 327
               +L
Sbjct: 307 KGLDYL 312


>gi|225629667|ref|ZP_03787653.1| Holliday junction DNA helicase RuvB [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
 gi|225591479|gb|EEH12533.1| Holliday junction DNA helicase RuvB [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
          Length = 266

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 156/255 (61%), Positives = 201/255 (78%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           EDA    +RP  L++F GQ +   NLKVFI AA+ R EALDHVL  GPPGLGKTTLAQ+V
Sbjct: 12  EDARNINIRPEQLDDFVGQKDLIQNLKVFINAAQTRTEALDHVLLYGPPGLGKTTLAQIV 71

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           ++EL V+FR+TSGP+++KAGDLAA+LT L  +DVLFIDEIHRL+  +EE+LY AMEDF L
Sbjct: 72  SKELRVSFRATSGPLLSKAGDLAAVLTTLNAKDVLFIDEIHRLNRSIEEVLYTAMEDFCL 131

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D++VGEGPS R+++I+L  FTLI ATTR+GLL+ PL+DRFGIP+ L FY  E+L  I++R
Sbjct: 132 DILVGEGPSTRTLRIDLPPFTLIGATTRLGLLSAPLRDRFGIPLHLEFYSFEELVNIIKR 191

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
           GA++    + ++AA EIA R+RGTPRIA RLLRR+RDF EV   K IT E+AD+ LL+L 
Sbjct: 192 GARVLSAEIEEDAAREIACRARGTPRIALRLLRRIRDFVEVKDDKKITYEVADSVLLKLG 251

Query: 255 IDKMGFDQLDLRYLT 269
           +DKMG ++LD+ YL 
Sbjct: 252 VDKMGLNKLDMNYLR 266


>gi|317508679|ref|ZP_07966334.1| Holliday junction DNA helicase RuvB [Segniliparus rugosus ATCC
           BAA-974]
 gi|316253000|gb|EFV12415.1| Holliday junction DNA helicase RuvB [Segniliparus rugosus ATCC
           BAA-974]
          Length = 313

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 138/277 (49%), Positives = 189/277 (68%), Gaps = 1/277 (0%)

Query: 3   DREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           D +  +    +  +A++ + LRPR L++F GQ +    L++ ++ AK+R    DHVLF G
Sbjct: 12  DLDRAVRPEAAVGEAELDASLRPRALDDFIGQPKVREQLRLLLQGAKSRGAVPDHVLFSG 71

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKT+LA +VA ELG   R TSGP + +AGDLAALL+NL + DVLFIDEIHR++   
Sbjct: 72  PPGLGKTSLAMIVAGELGAALRMTSGPALERAGDLAALLSNLVEGDVLFIDEIHRMARPA 131

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LY AMEDF++D++VG+GP A ++ + L+ FTL+ ATTR G LTNPL+DRFG    + 
Sbjct: 132 EEMLYLAMEDFRVDVVVGKGPGAMAIPLTLAPFTLVGATTRTGALTNPLRDRFGFVGHME 191

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FY  E+L  ++ R AK+ G+ +  EAA EIA RSRGTPRIA RLLRRVRD+A+V     +
Sbjct: 192 FYTPEELSQVLARSAKILGVELDAEAAIEIASRSRGTPRIANRLLRRVRDYAQVRGDGFV 251

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
               A AAL    +D++G D+LD   L+ +    GGG
Sbjct: 252 DLAAAQAALQIFDVDELGLDRLDRAVLSALVSGHGGG 288


>gi|330723323|gb|AEC45693.1| Holliday junction DNA helicase RuvB [Mycoplasma hyorhinis MCLD]
          Length = 317

 Score =  262 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 106/306 (34%), Positives = 184/306 (60%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+  E+F GQ +    LKV I +++ R + LDH+LF G PG GKTTLA ++A E    
Sbjct: 7   IRPKNFEQFIGQQKLVETLKVLISSSRKRKKPLDHILFYGSPGTGKTTLANILATETQSK 66

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            +   GP++ K  D+ ++L N+E   ++FIDEIH ++  +EE+LY AME+F +D+ +G  
Sbjct: 67  IKYIQGPLLEKKSDILSMLANVEKGHIIFIDEIHSINKNIEELLYSAMEEFVIDIQIGVE 126

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
             ++ +++ L  FTL+ A+T++  ++ PL++RFG+  ++  Y  E++K I+Q  + +  +
Sbjct: 127 GESKIMRMKLPEFTLVGASTKISSISLPLKNRFGLTAKIYEYTSEEMKKIIQNSSNILNI 186

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +++E    +   +  TPRIA  LL+R+RDFA V   KTI+++I D     + I   G +
Sbjct: 187 EISEELVHYVVDFTNKTPRIANNLLKRIRDFAIVEDTKTISKDIIDKTFNGIGIFLNGLN 246

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
             ++ YL ++A  F    V ++ I   + E ++ I + IEP ++Q   I++TPRGR +  
Sbjct: 247 LQNIEYLNLLANVFKRKTVSLDVICGIMKETKENIINNIEPILLQLELIEKTPRGRKITQ 306

Query: 322 IAWQHL 327
               +L
Sbjct: 307 KGLDYL 312


>gi|54020198|ref|YP_115932.1| Holliday junction DNA helicase RuvB [Mycoplasma hyopneumoniae 232]
 gi|68715317|sp|Q600N3|RUVB_MYCH2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|148887010|sp|Q4A7W4|RUVB_MYCH7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|148887011|sp|Q4A9R6|RUVB_MYCHJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|53987371|gb|AAV27572.1| holliday junction DNA helicase [Mycoplasma hyopneumoniae 232]
 gi|144227620|gb|AAZ44505.2| holliday junction DNA helicase RuvB [Mycoplasma hyopneumoniae J]
 gi|144575419|gb|AAZ53775.2| holliday junction DNA helicase RuvB [Mycoplasma hyopneumoniae 7448]
 gi|312601378|gb|ADQ90633.1| Holliday junction ATP-dependent DNA helicase ruvB [Mycoplasma
           hyopneumoniae 168]
          Length = 318

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 113/306 (36%), Positives = 185/306 (60%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP + E F GQ +    L++ I +++ R ++LDH+LF GPPG GKTTLA +VA  L   
Sbjct: 7   IRPSSFENFIGQKKLVETLQILISSSQKRKQSLDHILFYGPPGTGKTTLANIVANVLEAK 66

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            +   GP++ K  D+ A+L N+    ++FIDEIH ++  +EE+LY AME+F +DL +G  
Sbjct: 67  IKYVQGPLLEKKSDVLAVLANISPDTIIFIDEIHGINKNIEELLYSAMEEFVIDLQIGVD 126

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
              + +++ L +FTLI A+T++  ++ PLQ+RFG   ++  Y +ED+  I++  + +  L
Sbjct: 127 GERKIMRMKLPQFTLIGASTKLAQISTPLQNRFGYVAKIVDYTLEDMIQIIRNSSAVLKL 186

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +  E    IA  S  TPRIA  LL+R+RDFA V +AK I ++I +     + I   G  
Sbjct: 187 KMNTEIIKYIASFSNNTPRIANNLLKRIRDFALVLNAKRIDKDIVNKTFDSIGIYNQGLS 246

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           Q+++ YL ++ + F G  V ++ I+  L E R  I ++IEP +I++  I++T RGR +  
Sbjct: 247 QINIEYLNLLVKIFKGKSVALDVIANVLKEHRQTIINIIEPPLIEKELIEKTSRGRRITK 306

Query: 322 IAWQHL 327
               +L
Sbjct: 307 KGRDYL 312


>gi|58697554|ref|ZP_00372791.1| Holliday junction DNA helicase RuvB [Wolbachia endosymbiont of
           Drosophila simulans]
 gi|58535961|gb|EAL59691.1| Holliday junction DNA helicase RuvB [Wolbachia endosymbiont of
           Drosophila simulans]
          Length = 264

 Score =  261 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 154/253 (60%), Positives = 199/253 (78%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           ED     +RP  L++F GQ +   NLKVFI AA+ R EALDHVL  GPPGLGKTTLAQ+V
Sbjct: 12  EDVRNINIRPEQLDDFVGQKDLIQNLKVFINAAQTRTEALDHVLLYGPPGLGKTTLAQIV 71

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           ++EL V+FR+TSGP+++KAGDLAA+LT L  +DVLFIDEIHRL+  +EE+LY AMEDF L
Sbjct: 72  SKELRVSFRATSGPLLSKAGDLAAVLTTLNAKDVLFIDEIHRLNRSIEEVLYTAMEDFCL 131

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D++VGEGPS R+++I+L  FTLI ATTR+GLL+ PL+DRFGIP+ L FY  E+L  I++R
Sbjct: 132 DILVGEGPSTRTLRIDLPPFTLIGATTRLGLLSAPLRDRFGIPLHLEFYSFEELVNIIKR 191

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
           GA++    + ++AA EIA R+RGTPRIA RLLRR+RDF EV   K IT E+AD+ LL+L 
Sbjct: 192 GARVLSAEIEEDAAREIACRARGTPRIALRLLRRIRDFVEVKDDKKITYEVADSVLLKLG 251

Query: 255 IDKMGFDQLDLRY 267
           +DKMG ++LD+ Y
Sbjct: 252 VDKMGLNKLDMNY 264


>gi|313678673|ref|YP_004056413.1| Holliday junction DNA helicase RuvB [Mycoplasma bovis PG45]
 gi|312950367|gb|ADR24962.1| Holliday junction DNA helicase RuvB [Mycoplasma bovis PG45]
          Length = 320

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 111/307 (36%), Positives = 181/307 (58%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           LLRP + +EF GQ +    +K  I+ +  R E LDH+LF GPPG GKTTLA ++  EL  
Sbjct: 5   LLRPTSFKEFIGQKKLIVTVKAMIDGSLHRNEVLDHILFYGPPGTGKTTLASLIGNELNK 64

Query: 81  NFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
                 G ++ K  D+ ++  N+ + D++FIDEIH ++  VEEI+Y AMEDF++D+++G 
Sbjct: 65  KVHYLQGALLEKKSDVLSVFANVNENDIVFIDEIHSINKSVEEIIYNAMEDFKIDIIIGP 124

Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
             +++ +++NL  FTLI ATT++ LL+ P +DRFG+  RL+ Y  E++  I+Q   K   
Sbjct: 125 EGNSKVMRMNLKPFTLIGATTKLNLLSQPFKDRFGLLARLSQYSNEEIVKILQNSKKKLK 184

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGF 260
           +   +E    +A  SR TPRIA  LL+R  DF+   +   I  +        L +  +G 
Sbjct: 185 VETDNEVLMLLAKYSRNTPRIANHLLKRAYDFSLKNNQNIIDAKTTYLTFKHLELFDLGL 244

Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320
           ++  + YL++++ +F    V I+ IS  L+  +D + + IEPY++    I+++PRGR + 
Sbjct: 245 NKEHIEYLSLLSNSFYDKFVSIDAISGILNMNKDNLINDIEPYLLYLQLIEKSPRGRRIT 304

Query: 321 PIAWQHL 327
                +L
Sbjct: 305 TKGVDYL 311


>gi|148377490|ref|YP_001256366.1| Holliday junction DNA helicase B [Mycoplasma agalactiae PG2]
 gi|148291536|emb|CAL58922.1| Holliday junction DNA helicase ruvB [Mycoplasma agalactiae PG2]
          Length = 320

 Score =  258 bits (660), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 110/307 (35%), Positives = 180/307 (58%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           LLRP + +EF GQ +    LK  I+ +  R E LDH+LF GPPG GKTTLA ++  EL  
Sbjct: 5   LLRPTSFKEFIGQKKLIITLKAMIDGSLHRNEVLDHILFYGPPGTGKTTLASLIGNELNK 64

Query: 81  NFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
                 G ++ K  D+ ++  N+ + D++FIDEIH ++  VEEI+Y AMEDF++DL++G 
Sbjct: 65  RVHYLQGALLEKKSDVLSVFANVNENDIVFIDEIHSINRAVEEIIYNAMEDFKIDLIIGP 124

Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
             +++ +++NL  FTL+ ATT++ LL+ P +DRFG+  RL+ Y  E++  I+Q   K   
Sbjct: 125 EGNSKVMRMNLKPFTLVGATTKLNLLSQPFKDRFGLLARLSQYSNEEIVKILQNSKKKLK 184

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGF 260
           +    +    +A  SR TPRIA  LL+R  DF+   +   I  +        L +  +G 
Sbjct: 185 VETDSDVLMLLAKYSRNTPRIANHLLKRAYDFSLKNNQSIIDAKTTYLTFKHLELFDLGL 244

Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320
           ++  + YL++++ +F    V I+ IS  L+  ++ + + IEPY++    I+++PRGR + 
Sbjct: 245 NKEHIEYLSLLSNSFYDKFVSIDAISGILNMSKENLINDIEPYLLYLQLIEKSPRGRRIT 304

Query: 321 PIAWQHL 327
                +L
Sbjct: 305 TKGVDYL 311


>gi|144900759|emb|CAM77623.1| Holliday junction DNA helicase RuvB [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 255

 Score =  258 bits (660), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 135/224 (60%), Positives = 178/224 (79%)

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +FIDEIHRL+  +EE+LYPAMEDFQLDL++GEGP+ARSV+I+L  FTL+ ATTR GLLT 
Sbjct: 1   MFIDEIHRLNPAIEEVLYPAMEDFQLDLIIGEGPAARSVRIDLPPFTLVGATTRSGLLTT 60

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
           PL++RFGIP R+N+Y  ++L+ IV RGA++ G  VT + A E+A R+RGTPR+AGRLLRR
Sbjct: 61  PLRERFGIPCRMNYYTPQELELIVARGARVLGFDVTPDGAAEVARRARGTPRVAGRLLRR 120

Query: 229 VRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAG 288
           VRDFA VA    +  ++AD AL RL +D+MG D +D RYL  IA N+GGGPVG++T++A 
Sbjct: 121 VRDFAAVAGQSPVDAQVADRALTRLEVDQMGLDAMDRRYLKCIADNYGGGPVGVDTLAAA 180

Query: 289 LSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           LSE RD +E++ EPY++QQG IQRTPRGR+L     QH+G++ P
Sbjct: 181 LSESRDTLEEVGEPYLLQQGLIQRTPRGRMLSSARIQHMGLNPP 224


>gi|291320152|ref|YP_003515413.1| Holliday junction DNA helicase RuvB [Mycoplasma agalactiae]
 gi|290752484|emb|CBH40456.1| Holliday junction DNA helicase ruvB [Mycoplasma agalactiae]
          Length = 320

 Score =  258 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 111/307 (36%), Positives = 178/307 (57%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           LLRP   +EF GQ +    LK  I+ +  R E LDH+LF GPPG GKTTLA ++  EL  
Sbjct: 5   LLRPTCFKEFIGQKKLIITLKAMIDGSLHRNETLDHILFYGPPGTGKTTLASLIGNELNK 64

Query: 81  NFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
                 G ++ K  D+ ++  N+ + D++FIDEIH ++  VEEI+Y AMEDF++DL++G 
Sbjct: 65  KVHYLQGALLEKKSDVLSVFANVNENDIVFIDEIHSINKAVEEIIYNAMEDFKIDLIIGP 124

Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
             +++ +++NL  FTLI ATT++ LL+ P +DRFG+  RL+ Y  E++  I+Q   K   
Sbjct: 125 EGNSKVMRMNLKPFTLIGATTKLNLLSQPFKDRFGLLARLSQYSNEEIVKILQNSKKKLK 184

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGF 260
           +    +    +A  SR TPRIA  LL+R  DF+   +   I  +        L +  +G 
Sbjct: 185 VETDSDVLMLLAKYSRNTPRIANHLLKRAYDFSLKNNQSIIDAKTTYLTFKHLELFDLGL 244

Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320
           ++  + YL++++ +F    V I+ IS  L+  ++ +   IEPY++    I+++PRGR + 
Sbjct: 245 NKEHIEYLSLLSNSFYDKFVSIDAISGILNMSKENLISDIEPYLLYLQLIEKSPRGRRIT 304

Query: 321 PIAWQHL 327
                +L
Sbjct: 305 TKGVDYL 311


>gi|15829129|ref|NP_326489.1| Holliday junction DNA helicase B [Mycoplasma pulmonis UAB CTIP]
 gi|20140190|sp|Q98PR1|RUVB_MYCPU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|14090073|emb|CAC13831.1| HOLLIDAY JUNCTION DNA HELICASE RUVB [Mycoplasma pulmonis]
          Length = 315

 Score =  258 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 99/306 (32%), Positives = 181/306 (59%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+   +F GQ +    LKV I +A+ +   LDH+LF G PG GKT+LA +++  L   
Sbjct: 7   IRPKNFSDFVGQNKLKKLLKVMISSAQVQNRPLDHILFYGNPGTGKTSLASIISNSLNSR 66

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            +   G ++ K  D+  L  ++E+ D++F+DEIH ++  +EE+LY  +EDF +D+++G  
Sbjct: 67  IKYAQGNLLDKKTDILTLFASVEENDIIFVDEIHAINKNIEELLYSILEDFVVDIVIGVE 126

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            +++ +++NL  FT I ATT++  ++ PL+DRFG+  +++ Y++ED++ I++  +K   +
Sbjct: 127 SNSKIMRLNLKPFTFIGATTQINRISKPLRDRFGLIGQISNYQVEDIEKIIKNNSKKLNI 186

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + ++A   IA+ S+  PR+A  LL+R +DF      + I  ++ +  L +L I + G +
Sbjct: 187 QIDEKATNLIALYSQNIPRLAINLLKRTKDFCIYEECQIIDYKLVNKTLKQLGIYENGLN 246

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           +  ++YL  ++  F    V ++ I   LS  ++ I   IEP +I    I +TPRGR +  
Sbjct: 247 ESQVKYLRSLSETFYKKAVSLDLIVGFLSLQKETIISEIEPLLISNNLIVKTPRGRKITQ 306

Query: 322 IAWQHL 327
               +L
Sbjct: 307 KGISYL 312


>gi|297516897|ref|ZP_06935283.1| Holliday junction DNA helicase RuvB [Escherichia coli OP50]
          Length = 217

 Score =  255 bits (652), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 125/215 (58%), Positives = 161/215 (74%)

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  
Sbjct: 1   PVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQ 60

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           RL FY++ DL+ IV R A+  GL ++D+ A E+A R+RGTPRIA RLLRRVRDFAEV H 
Sbjct: 61  RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 120

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
            TI+ +IA  AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED
Sbjct: 121 GTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIED 180

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           ++EPY+IQQGF+QRTPRGR+    AW H GI  P 
Sbjct: 181 VLEPYLIQQGFLQRTPRGRMATTRAWNHFGITPPE 215


>gi|240047399|ref|YP_002960787.1| Holliday junction DNA helicase RuvB [Mycoplasma conjunctivae
           HRC/581]
 gi|239984971|emb|CAT04964.1| Holliday junction ATP-dependent DNA helicase r [Mycoplasma
           conjunctivae]
          Length = 321

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 108/306 (35%), Positives = 174/306 (56%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP + E F GQ +    LKV IE+++ R + LDHVLF GPPG GKTTLA ++A  +   
Sbjct: 7   IRPTSFEGFIGQKKIVQTLKVLIESSQKRKKTLDHVLFHGPPGTGKTTLANIIASMVNTK 66

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            +   GP++ K  D+ A+L N+    V+FIDEIH ++  +EE+LY AME+F +DL +G  
Sbjct: 67  IKYVQGPLLEKKADVLAMLANITKDSVIFIDEIHGINKNIEELLYSAMEEFVIDLQIGVD 126

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
              + +++ L  FTLI A+T++  ++ PLQ+RFG   ++  Y  ED++ I+   AK   +
Sbjct: 127 GENKIMRMKLPNFTLIGASTKLSQISTPLQNRFGFIAKITEYSNEDMRQIIYNSAKKLHI 186

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +       I   +  TPRIA  LL+R+RDFA V + + I   I +     + + K G  
Sbjct: 187 NLGASEIDYIVNFTNKTPRIANNLLKRIRDFALVQNIEKIDINIINKTFDSIGVYKNGLS 246

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           +  + YL ++   F    V ++ +   L E R  I  +IEP ++++ +I++T RGR +  
Sbjct: 247 ETSVEYLKILHYIFKDKSVALDVLVGILKESRQTIIHIIEPLLVEKFYIEKTIRGRRITQ 306

Query: 322 IAWQHL 327
               +L
Sbjct: 307 QGVWYL 312


>gi|169836082|ref|ZP_02869270.1| Holliday junction DNA helicase B [candidate division TM7
           single-cell isolate TM7a]
          Length = 272

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 124/246 (50%), Positives = 170/246 (69%)

Query: 84  STSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPS 143
            TSG  I +AGDLA++LTNL+D D+LFIDEIHRLS  VEEILY AMED++LD+++G+GP+
Sbjct: 26  VTSGLAIERAGDLASILTNLQDNDILFIDEIHRLSRAVEEILYSAMEDYKLDIIIGKGPA 85

Query: 144 ARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAV 203
           ARSV+++L +FT+I ATTR G L  PL+DRFGI  RL FY  + +  I++R A +    +
Sbjct: 86  ARSVRLDLPKFTVIGATTRTGSLAAPLRDRFGIIHRLEFYTPDQVSNIIKRAASILKSNI 145

Query: 204 TDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQL 263
            D++A  ++ R+R TPRIA RLL+RVRD+A+V     I       AL  L ID++G D  
Sbjct: 146 HDDSARILSTRARLTPRIANRLLKRVRDYADVNGDGIIDVTTTMNALEMLEIDELGLDPA 205

Query: 264 DLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIA 323
           D   L+ I  ++G  PVG+ TI+A   +    IED  EPY++Q GFI+RTPRGR + P A
Sbjct: 206 DRHLLSSIVESYGDNPVGLTTIAALTGDEATTIEDFYEPYLLQIGFIERTPRGRRVTPRA 265

Query: 324 WQHLGI 329
            +HL +
Sbjct: 266 RKHLEL 271


>gi|206895949|ref|YP_002247233.1| holliday junction DNA helicase RuvB [Coprothermobacter
           proteolyticus DSM 5265]
 gi|206738566|gb|ACI17644.1| holliday junction DNA helicase RuvB [Coprothermobacter
           proteolyticus DSM 5265]
          Length = 320

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 121/299 (40%), Positives = 177/299 (59%)

Query: 27  LEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTS 86
           L+EF GQ  A S++   +EAAK   +  DH+LF GPPGLGKTTLA++VA+E+  NF  T+
Sbjct: 14  LKEFVGQTTAVSSVSFSVEAAKKLGKMPDHMLFFGPPGLGKTTLARLVAQEVAANFVETT 73

Query: 87  GPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARS 146
           G  +    D+  +L +     V FIDEIHR+   VEE+LY  M++  + +MVG+  +AR 
Sbjct: 74  GNSLTNVKDVLNILLSFSRPTVFFIDEIHRIPKSVEELLYAPMDEQVIRVMVGKNKTARI 133

Query: 147 VKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDE 206
           +K +L  FTLI ATT++  L+ P   RF I I  N+Y  E++  I++      GL ++ E
Sbjct: 134 IKFDLQPFTLIGATTKISFLSKPFLSRFSIKISFNYYGEEEIGKIIKEELAQQGLDISAE 193

Query: 207 AACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLR 266
           A  EIA RSRGTPR A ++ RRV ++A + H +T+           L ID+ G   LD  
Sbjct: 194 ALREIAKRSRGTPREALQICRRVVEYAALNHLETLDVGAIIDLFNLLNIDEYGLSPLDKD 253

Query: 267 YLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQ 325
           Y+  +A  F GGP GI  +++ L    + +E ++EPY++  GF+  T RGR L    W+
Sbjct: 254 YIRTLAETFKGGPSGIRVLASALGMDVETLEGVVEPYLMMLGFVTVTSRGRKLTDKGWK 312


>gi|126659996|ref|ZP_01731119.1| Holliday junction DNA helicase B [Cyanothece sp. CCY0110]
 gi|126618761|gb|EAZ89507.1| Holliday junction DNA helicase B [Cyanothece sp. CCY0110]
          Length = 307

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 126/262 (48%), Positives = 179/262 (68%), Gaps = 1/262 (0%)

Query: 3   DREGLLSR-NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           ++E LL   N   ++++   +RP  LE++ GQ    S L + I+AA+ R + LDH+L  G
Sbjct: 38  NQERLLDPTNKDSDESNAQNIRPHRLEDYIGQESLKSVLNIGIKAARGRKDPLDHLLLYG 97

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTT++ ++A E+GVN + T+ P + +  D+  LL NL+  DVLFIDEIHRL+ + 
Sbjct: 98  PPGLGKTTMSLILAEEMGVNCKITAAPALERPRDITGLLVNLKPGDVLFIDEIHRLNRLT 157

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           EE+LYPAMED++LD+ +G+G +AR+  I L +FTL+ ATT+VG LT+PL+DRFG+  RL 
Sbjct: 158 EELLYPAMEDYRLDITIGKGQAARTRSIPLPKFTLVGATTKVGSLTSPLRDRFGLIERLR 217

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           FYE E+L  I++R AK+  + +T   A EIA RSRGTPRIA RLLRRVRD+  V   ++I
Sbjct: 218 FYEPEELALIIERTAKILDVTITQPGAMEIARRSRGTPRIANRLLRRVRDYQIVHKHQSI 277

Query: 242 TREIADAALLRLAIDKMGFDQL 263
             E+A  +L    +D  G D  
Sbjct: 278 NEEVASESLDFYQVDPRGLDWT 299


>gi|294155533|ref|YP_003559917.1| Holliday junction DNA helicase [Mycoplasma crocodyli MP145]
 gi|291600218|gb|ADE19714.1| Holliday junction DNA helicase [Mycoplasma crocodyli MP145]
          Length = 314

 Score =  250 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 108/302 (35%), Positives = 174/302 (57%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP   +EF GQ +    LK  I +A  +   LDH+LF GPPG GKT+LA ++A E    
Sbjct: 5   LRPSNFKEFIGQNKIKETLKAMIISANTQKRVLDHILFYGPPGTGKTSLATIIANEQNAI 64

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
                   I K  DL ++L+ +   D+LFIDE+H L+ ++EE+LY AMEDF  D+++G  
Sbjct: 65  IHYVQASNIDKKSDLVSILSTINHGDILFIDEVHGLNKVIEELLYNAMEDFVFDILIGTE 124

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            +A+++++ +  FTLIAATT++ L++ PL+DRFG   +LN YE+ +L  I++  AK   +
Sbjct: 125 ENAKTIRMKIKPFTLIAATTKLNLISQPLKDRFGFIAKLNNYELIELVRILKNSAKALKI 184

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + +  A  I   SR TPRIA  LLRRV DF    + + I  +I +     L + + G  
Sbjct: 185 EIGESEANLICSYSRQTPRIANNLLRRVNDFKIANNKELIDFKIIEKTFDNLELYEFGLT 244

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           +  + YL ++  +F      ++T+   L+  +D + + +EP ++  G I+++ RGR +  
Sbjct: 245 KDHIEYLDLLRNSFDEKWASLDTMCGLLNLEKDNLLNEVEPILLYYGLIKKSSRGRQITN 304

Query: 322 IA 323
             
Sbjct: 305 EG 306


>gi|172046793|sp|Q4A6N6|RUVB_MYCS5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|144574985|gb|AAZ43585.2| holliday junction DNA helicase RuvB [Mycoplasma synoviae 53]
          Length = 316

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 107/305 (35%), Positives = 171/305 (56%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP   E F GQ    S LK  IE++K + + L+H+LF G PG+GKT+LA ++A E     
Sbjct: 5   RPHNFETFIGQKNLISTLKAMIESSKKQNKVLNHILFYGMPGMGKTSLAGIIANETKNKI 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGP 142
               G  + K  DL  +L+ + + D++FIDEIH ++  + E LY AMEDF  DL++G   
Sbjct: 65  HFIQGSNLEKKSDLINILSVINENDIVFIDEIHSINKNIIEFLYSAMEDFVFDLIIGTES 124

Query: 143 SARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLA 202
           +A+++++ +  FTLI ATT++  +  P +DRFG   R   Y  ED+K I++   KL  + 
Sbjct: 125 NAKALRMKIKPFTLIGATTKINEMAQPFKDRFGYIARFVSYNAEDMKQIIRNSIKLLNIN 184

Query: 203 VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQ 262
           + +E    +A  SR TPRI   LL R+ DFA V +A  I ++I       L + + G  +
Sbjct: 185 LGEEHFDFVASYSRNTPRIVNHLLERINDFAIVKNAGIIDKKIIKKTFKSLDLYEYGLTK 244

Query: 263 LDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPI 322
             + YL ++   F   PV ++T+S  L  P++ + + IEP ++    I +T +GR++   
Sbjct: 245 DHVEYLQLLRDGFDSKPVSLDTLSGVLIHPKEVLVNEIEPILLYLKLITKTSKGRMISSK 304

Query: 323 AWQHL 327
              +L
Sbjct: 305 GITYL 309


>gi|269114959|ref|YP_003302722.1| holliday junction DNA helicase ruvB [Mycoplasma hominis]
 gi|268322584|emb|CAX37319.1| Holliday junction DNA helicase ruvB [Mycoplasma hominis ATCC 23114]
          Length = 317

 Score =  249 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 104/302 (34%), Positives = 175/302 (57%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRST 85
           + +EF GQ +  S +K+ IE+AK + + +DH+LF GPPGLGKTTLA+++++E   N    
Sbjct: 9   SFDEFVGQEKLISTIKIIIESAKVQKKQIDHLLFYGPPGLGKTTLAKIISKETKSNIVYV 68

Query: 86  SGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSAR 145
            GP+I K  D+  + +++ D D++FIDEIH ++  +EE+ Y A+E+  +D+ +G     +
Sbjct: 69  QGPLIEKKSDVLTIFSSINDNDIIFIDEIHGINKNIEELFYSALEEGTIDVALGVDGDKK 128

Query: 146 SVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTD 205
            +++ L +F LIAATT++ LL+ PL+DRFG   +L+ Y   ++  I+   A    + + +
Sbjct: 129 IMRMKLKKFCLIAATTKINLLSKPLKDRFGYIGKLSDYSDLEIAKIIFNSATKNKIKIKN 188

Query: 206 EAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDL 265
           +A   IA+ SR TPR+A  LL+RV DFA       I  E    A   L I   G     +
Sbjct: 189 DAINFIAIHSRQTPRVANTLLKRVNDFAIYYKIDLIDLETVKKAFSYLGIYLYGLYSPQI 248

Query: 266 RYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQ 325
            YL  + + F      ++ IS+ + + +  I + IEP ++    I+++PRGR +     +
Sbjct: 249 EYLKTLHKVFNDKFSSLDAISSIIKDDKYTILNDIEPILLIYKLIEKSPRGRKITNNGIE 308

Query: 326 HL 327
           +L
Sbjct: 309 YL 310


>gi|193216718|ref|YP_001999960.1| Holliday junction DNA helicase RuvB [Mycoplasma arthritidis
           158L3-1]
 gi|193002041|gb|ACF07256.1| Holliday junction DNA helicase RuvB [Mycoplasma arthritidis
           158L3-1]
          Length = 317

 Score =  245 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 105/309 (33%), Positives = 176/309 (56%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           ++  R ++  +F GQ +    LKV I +A      +DH+LF GPPGLGKT+LA+++A E 
Sbjct: 3   LAEFRVKSFSDFIGQEKITKTLKVMIASASKLKRPIDHLLFYGPPGLGKTSLAKIIATET 62

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138
             N     GP++ K  D+  LL ++++ D++FIDE+H ++  +EE+LY A+ED  +D+ +
Sbjct: 63  KRNIVYAQGPLLEKKSDILTLLNSIKENDIIFIDEVHGINHNLEELLYSALEDGVVDIPL 122

Query: 139 GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKL 198
           G     R +++ L  F+LIAATT+  LL+ PL+DRFG   +L  Y  E++  I+   A  
Sbjct: 123 GVEGDRRIMRMKLKSFSLIAATTKFNLLSQPLKDRFGFIGKLTPYTDEEIIKIITNSAAR 182

Query: 199 TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKM 258
             + + ++A  +IA  SR TPR+A  LL+RV DFA       IT ++   A   + I + 
Sbjct: 183 NNIPIDEKAIKKIAEHSRQTPRVANNLLKRVYDFAVYEKKDLITEKLVKKAFKFIGIFQY 242

Query: 259 GFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRL 318
           G     + YL ++ + F      ++ IS  +S+ +  I + IEP ++    I+++ RGR 
Sbjct: 243 GLVYSQIEYLRVLHQVFNDSFGSLDAISGIISDEKSTIINEIEPLLLVYKLIEKSSRGRK 302

Query: 319 LMPIAWQHL 327
           +     ++L
Sbjct: 303 ITANGIRYL 311


>gi|293363752|ref|ZP_06610494.1| Holliday junction DNA helicase RuvB [Mycoplasma alligatoris A21JP2]
 gi|292552673|gb|EFF41441.1| Holliday junction DNA helicase RuvB [Mycoplasma alligatoris A21JP2]
          Length = 314

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 102/305 (33%), Positives = 173/305 (56%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           LRP T  EF GQ +    +K  I +A+ + ++LDH+L  GPPG GKT+LA ++A      
Sbjct: 5   LRPSTFNEFIGQAKLKETIKAMIVSARVQNKSLDHILLYGPPGTGKTSLAGIIASAQKSF 64

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
                   I K  DL ++ + L   D+LFIDE+H L+ ++EE+LY AMEDF  D+++G  
Sbjct: 65  IHYVQASNIEKKSDLISIFSTLNQGDILFIDEVHSLNKMIEELLYNAMEDFVFDVIIGTE 124

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            +A+++++ +  FTLIAATT++  ++ PL+DRFG+  +++ YE  +L  I++  A +  L
Sbjct: 125 DNAKTMRMKIKPFTLIAATTKINNISQPLKDRFGLVGKMHNYEDSELVKILKNSASILKL 184

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            +    A  I   SR TPRIA  LL+RV DF    + + I  +I       L + + G  
Sbjct: 185 DLGQSEAEYIVSFSRQTPRIANNLLKRVNDFKIAKNKEIIDLKIIQKTFDNLELYEFGLG 244

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           +  + Y+ ++  +F      ++TIS+ L+  ++ + + IEP ++    I+++ RGR +  
Sbjct: 245 KDHVEYIQLLKDSFDEKWASLDTISSLLNTNKENLLNDIEPILLFYRLIKKSSRGRQITN 304

Query: 322 IAWQH 326
               +
Sbjct: 305 EGINY 309


>gi|190149556|ref|YP_001968081.1| holliday junction ATP-dependent DNA helicase RuvB [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|189914687|gb|ACE60939.1| holliday junction ATP-dependent DNA helicase RuvB [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
          Length = 210

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 116/207 (56%), Positives = 154/207 (74%)

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LYPAMED+QLD+M+GEGP+ARS+K++L  FTL+ ATTR G LT+PL+DRFGI  RL FY
Sbjct: 1   MLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQRLEFY 60

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            ++DL +IV+R A    L ++ + A E+A RSRGTPRIA RLLRRVRD+A+V +   IT 
Sbjct: 61  SVDDLTSIVKRSADCLNLNLSPDGAYEVARRSRGTPRIANRLLRRVRDYADVRNNGVITS 120

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           +IA  AL  L +D  GFD +D++ L  I   F GGPVG++ ++A + E RD IED++EPY
Sbjct: 121 DIAKQALAMLDVDSEGFDFMDIKLLQAIVERFDGGPVGLDNLAAAIGEERDTIEDVLEPY 180

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGID 330
           +IQQGF+QRTPRGR+     + HLGI 
Sbjct: 181 LIQQGFLQRTPRGRIATSRTYAHLGIA 207


>gi|315282448|ref|ZP_07870860.1| holliday junction DNA helicase RuvB [Listeria marthii FSL S4-120]
 gi|313613911|gb|EFR87643.1| holliday junction DNA helicase RuvB [Listeria marthii FSL S4-120]
          Length = 218

 Score =  239 bits (609), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 113/214 (52%), Positives = 150/214 (70%)

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           S  +EEILYPAMED+ LD+++G GP+ARSV+++L  FTLI ATTR GLL+ PL+DRFG+ 
Sbjct: 1   SRAIEEILYPAMEDYCLDIVIGTGPTARSVRLDLPPFTLIGATTRAGLLSAPLRDRFGVI 60

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
             L FY  E L  IV R + +    + +  A EIA RSRGTPRIA RLL+RVRDFA+V  
Sbjct: 61  DHLEFYTEEQLTEIVLRTSSILDTKIDELGAREIARRSRGTPRIANRLLKRVRDFAQVRG 120

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
             T+T ++A  AL  L +D  G D +D + L  I ++F GGPVG++TI+A + E R+ IE
Sbjct: 121 NGTVTEKLAKEALTLLQVDPRGLDTIDQKLLHTIIQSFRGGPVGLDTIAASIGEERETIE 180

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           D+ EPY++Q GF+QRTPRGR+    A+ HLGI  
Sbjct: 181 DMQEPYLLQIGFLQRTPRGRIATETAYNHLGISY 214


>gi|319777049|ref|YP_004136700.1| holliday junction ATP-dependent DNA helicase ruvb [Mycoplasma
           fermentans M64]
 gi|238809833|dbj|BAH69623.1| hypothetical protein [Mycoplasma fermentans PG18]
 gi|318038124|gb|ADV34323.1| Holliday junction ATP-dependent DNA helicase RuvB [Mycoplasma
           fermentans M64]
          Length = 320

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 107/307 (34%), Positives = 175/307 (57%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           +LRP    EF GQ +    LK  IE ++ R E LDH+LF GPPG GKT+LA ++A EL  
Sbjct: 5   MLRPANFFEFVGQEKLIYTLKTMIEGSRYRKEPLDHILFYGPPGTGKTSLASILANELDT 64

Query: 81  NFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
                 G ++ K  D+  +  N+++ D++FIDEIH ++  VEEI+Y AMED+++D+++G 
Sbjct: 65  KIHYLQGALLEKKSDILTVFANVKENDIIFIDEIHSMNKNVEEIIYNAMEDYKIDIIIGP 124

Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
             +++ +++NL  FTLI ATT++ LLT PL+DRFG   RL+ Y  +++  I++    +  
Sbjct: 125 EGNSKVMRMNLKPFTLIGATTKINLLTQPLKDRFGFIARLSQYNEKEIAKILENSEMVLN 184

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGF 260
           +         IA  S+GTPR+A  LL+R+ DF+       IT++   +    L +  +G 
Sbjct: 185 IKSERGVIPLIAKYSKGTPRVANHLLKRILDFSIQNKEDEITKKTTYSTFKHLELYDLGL 244

Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320
            +  + YL ++   F      I++I+  L+  RD +   +EP ++    I + PRGR + 
Sbjct: 245 GREHIEYLKVLNETFENKFAAIDSIAGVLNIDRDILIYELEPLLLYLKLIAKGPRGRKIT 304

Query: 321 PIAWQHL 327
                +L
Sbjct: 305 TKGIDYL 311


>gi|71894188|ref|YP_278296.1| Holliday junction DNA helicase B [Mycoplasma synoviae 53]
          Length = 304

 Score =  236 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 103/296 (34%), Positives = 167/296 (56%)

Query: 32  GQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA 91
           GQ    S LK  IE++K + + L+H+LF G PG+GKT+LA ++A E         G  + 
Sbjct: 2   GQKNLISTLKAMIESSKKQNKVLNHILFYGMPGMGKTSLAGIIANETKNKIHFIQGSNLE 61

Query: 92  KAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINL 151
           K  DL  +L+ + + D++FIDEIH ++  + E LY AMEDF  DL++G   +A+++++ +
Sbjct: 62  KKSDLINILSVINENDIVFIDEIHSINKNIIEFLYSAMEDFVFDLIIGTESNAKALRMKI 121

Query: 152 SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEI 211
             FTLI ATT++  +  P +DRFG   R   Y  ED+K I++   KL  + + +E    +
Sbjct: 122 KPFTLIGATTKINEMAQPFKDRFGYIARFVSYNAEDMKQIIRNSIKLLNINLGEEHFDFV 181

Query: 212 AMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMI 271
           A  SR TPRI   LL R+ DFA V +A  I ++I       L + + G  +  + YL ++
Sbjct: 182 ASYSRNTPRIVNHLLERINDFAIVKNAGIIDKKIIKKTFKSLDLYEYGLTKDHVEYLQLL 241

Query: 272 ARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHL 327
              F   PV ++T+S  L  P++ + + IEP ++    I +T +GR++      +L
Sbjct: 242 RDGFDSKPVSLDTLSGVLIHPKEVLVNEIEPILLYLKLITKTSKGRMISSKGITYL 297


>gi|331703542|ref|YP_004400229.1| Holliday junction DNA helicase RuvB [Mycoplasma mycoides subsp.
           capri LC str. 95010]
 gi|328802097|emb|CBW54251.1| Holliday junction DNA helicase RuvB [Mycoplasma mycoides subsp.
           capri LC str. 95010]
          Length = 307

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 106/307 (34%), Positives = 183/307 (59%), Gaps = 3/307 (0%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           + RP   EE+ GQ    +NLKVFI++AK + + +DH+   GP G GKT+LA ++A++L  
Sbjct: 1   MFRPEKWEEYIGQTNILNNLKVFIKSAKKQNKVVDHIFIYGPSGYGKTSLAYLLAKQLKT 60

Query: 81  NFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           N R  +GP + KA D+ ++LT+++++DVLFIDEIH ++  V EI+YP +E+ +L++++G+
Sbjct: 61  NIRILNGPNLQKASDIISILTSIKEKDVLFIDEIHAVNKEVLEIIYPVLEENKLNIIIGK 120

Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
             +++ V I+L +FT+I ATT +  +  PL +RF I   +  Y +ED+  IV+       
Sbjct: 121 DYNSKVVNIDLPKFTIICATTEINKIPLPLLNRFPINFTMQEYNLEDMSKIVELYCNKFQ 180

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGF 260
           + +       +A   R TPRIA  L++R++D     + K I        L +L I ++G 
Sbjct: 181 IKLDQNIYLYLASFCRKTPRIAINLIKRIKDHIICDNPKIIDINYIKKVLEKLEIYELGL 240

Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320
              ++ YL MIA+N     +G++ I+  L+     I + IEP++I++  I RT +GR + 
Sbjct: 241 TITEINYLKMIAKNKR---IGLDNIAHLLNTTPLIIANNIEPFLIRESLIIRTIKGREIT 297

Query: 321 PIAWQHL 327
               +++
Sbjct: 298 YKGLKYI 304


>gi|47459106|ref|YP_015968.1| Holliday junction DNA helicase B [Mycoplasma mobile 163K]
 gi|47458435|gb|AAT27757.1| holliday junction DNA helicase RuvB [Mycoplasma mobile 163K]
          Length = 323

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 101/306 (33%), Positives = 168/306 (54%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP +  EF GQ      LKV I+++  R E LDH++F   PG GKT+LA ++++E+  N 
Sbjct: 13  RPNSFNEFIGQKNLKHTLKVLIKSSILRKENLDHLIFQANPGYGKTSLAYIISKEMNSNL 72

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGP 142
           +   G    K  DL +L  ++ + D++F+DEIH ++  +EEILY  M+DF +D+ +G   
Sbjct: 73  KIVQGNQFEKKSDLLSLFVSVNENDIIFVDEIHAINKSIEEILYSVMDDFVIDIQIGPEG 132

Query: 143 SARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLA 202
             + V++NL  FTLI ATT++  L+ PL DRFG   + + Y   ++  I++  A+   + 
Sbjct: 133 EKKIVRMNLPHFTLIGATTQIEKLSKPLIDRFGFVGKFSSYNENEINLILKNLARKLKIK 192

Query: 203 VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQ 262
           + ++A   I+M S   PRIA  LL+R  DFA     K+I       A   L I + G + 
Sbjct: 193 IDEQALKLISMNSSYIPRIAINLLKRAWDFAIFDEKKSIDITTIKKAFNYLGIFENGLNI 252

Query: 263 LDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPI 322
           L ++YL ++ + F      ++ IS+ L   ++ +   IE  ++    I++T RGR +   
Sbjct: 253 LHIKYLKLLYQAFKNKSASLDAISSILGLSKNNVVFHIESNLLNLELIEKTSRGRKIRKE 312

Query: 323 AWQHLG 328
             ++L 
Sbjct: 313 GIEYLN 318


>gi|328471548|gb|EGF42429.1| Holliday junction DNA helicase RuvB [Lactobacillus rhamnosus MTCC
           5462]
          Length = 216

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 101/205 (49%), Positives = 142/205 (69%)

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           MEDF +D++VG+GP+A  V   L  FTLI ATTR G+L+ PL+DRFGI   + +Y  +DL
Sbjct: 1   MEDFYIDIVVGQGPTAHPVHFPLPPFTLIGATTRAGMLSAPLRDRFGISEHMAYYSPDDL 60

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             IV+R A +  +A+  E A EIA RSRGTPR+A RLL+R+RDFAEVA    +   + D 
Sbjct: 61  SEIVKRSANVFNMAIDAEGAYEIARRSRGTPRVANRLLKRIRDFAEVAGKSPVDLAMVDH 120

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL +L +D  G DQ+D + LT + R++ GGPVG+ TI+A + E    IE++ EPY++Q G
Sbjct: 121 ALDQLQVDAQGLDQIDRKLLTFMIRDYQGGPVGLSTIAANIGEEMATIEEMYEPYLLQIG 180

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIPH 333
           F++RTPRGR++ P  + H+GI +P 
Sbjct: 181 FLKRTPRGRMVTPAGFAHMGITMPQ 205


>gi|323221951|gb|EGA06341.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
          Length = 213

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 128/213 (60%), Positives = 166/213 (77%), Gaps = 1/213 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S   +  ED     +RP+ L E+ GQ +  S +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRLISAGATIAEDVADRAIRPKFLAEYVGQPQVRSQMEIFIQAAKLRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIA 212
           L FY++ DL+ IV R A+  GL ++D+ A E+A
Sbjct: 181 LEFYQVPDLQHIVGRSARHMGLEMSDDGALEVA 213


>gi|289812351|ref|ZP_06542980.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 200

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 130/200 (65%), Positives = 164/200 (82%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L E+ GQ +  S +++FI+AAK R +ALDH+L  GPPGLGKTTLA +VA E+GVN
Sbjct: 1   MRPKLLAEYVGQPQVRSQMEIFIQAAKRRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 60

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS +VEE+LYPAMED+QLD+M+GEG
Sbjct: 61  LRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEG 120

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  RL FY++ DL+ IV R A+  GL
Sbjct: 121 PAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQHIVGRSARHMGL 180

Query: 202 AVTDEAACEIAMRSRGTPRI 221
            ++D+ A E+A R+RGTPRI
Sbjct: 181 EMSDDGALEVARRARGTPRI 200


>gi|125536093|gb|EAY82581.1| hypothetical protein OsI_37802 [Oryza sativa Indica Group]
          Length = 443

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 113/202 (55%), Positives = 148/202 (73%)

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           M D+QLD+M+GEGP+ARS+K++L  FTL+ ATTR G LT+PL+DRFGI  RL FY++ DL
Sbjct: 1   MVDYQLDIMIGEGPTARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQRLEFYQVADL 60

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           + IV R A   GL ++DE A E+A R+RGTPRIA RLLRRVRDFAEV     I+  +A  
Sbjct: 61  QHIVSRSAGCLGLELSDEGAHEVARRARGTPRIANRLLRRVRDFAEVRANGVISGAVAAQ 120

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL  L +D  GFD +D + L  I   F GGPVG++ ++A + E R+ IED+IEP++IQQG
Sbjct: 121 ALDMLNVDAEGFDYMDRKLLLAIIDKFTGGPVGLDNLAAAIGEERETIEDVIEPFLIQQG 180

Query: 309 FIQRTPRGRLLMPIAWQHLGID 330
           FIQRTPRGRL    A++H G++
Sbjct: 181 FIQRTPRGRLATQHAYRHFGLE 202


>gi|256384432|gb|ACU79002.1| holliday junction ATP-dependent DNA helicase RuvB [Mycoplasma
           mycoides subsp. capri str. GM12]
 gi|256385264|gb|ACU79833.1| holliday junction ATP-dependent DNA helicase RuvB [Mycoplasma
           mycoides subsp. capri str. GM12]
 gi|296455986|gb|ADH22221.1| holliday junction ATP-dependent DNA helicase RuvB [synthetic
           Mycoplasma mycoides JCVI-syn1.0]
          Length = 307

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 106/307 (34%), Positives = 183/307 (59%), Gaps = 3/307 (0%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           + RP   EE+ GQ     NLKVFI++AK + + +DH+   GP G GKT+LA ++A++L  
Sbjct: 1   MFRPEKWEEYIGQTNILDNLKVFIKSAKKQNKVVDHIFIYGPSGYGKTSLAYLLAKQLKT 60

Query: 81  NFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           N R  +GP + KA D+ ++LT+++++DVLFIDEIH ++  V EI+YP +E+ +L++++G+
Sbjct: 61  NIRILNGPNLQKASDIISILTSIKEKDVLFIDEIHAVNKEVLEIIYPVLEENKLNIIIGK 120

Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
             +++ V I+L +FT+I ATT +  +  PL +RF I   +  Y +ED+  IV+       
Sbjct: 121 DYNSKVVNIDLPKFTIICATTEINKIPLPLLNRFPINFTMQEYNLEDMSKIVELYCNKFQ 180

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGF 260
           + +  +    +A   R TPRIA  L++R++D     + K I        L +L I ++G 
Sbjct: 181 IKLDQDIYLYLASFCRKTPRIAINLIKRIKDHIICDNPKLIDINYIKKVLEKLEIYELGL 240

Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320
              ++ YL MIA+N     +G++ I+  L+     I + IEP++I++  I RT +GR + 
Sbjct: 241 TITEINYLKMIAKNKR---IGLDNIAHLLNTTPLIIANNIEPFLIRESLIIRTIKGREIT 297

Query: 321 PIAWQHL 327
               +++
Sbjct: 298 YKGLKYI 304


>gi|299782996|gb|ADJ40994.1| Holliday junction DNA helicase RuvB [Lactobacillus fermentum CECT
           5716]
          Length = 213

 Score =  233 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 103/210 (49%), Positives = 141/210 (67%)

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LY AMEDF +D++VGEGP+A  V   L  FTLI ATTR GLL  PL+DRFGI  R+++Y
Sbjct: 1   MLYSAMEDFYIDIVVGEGPTAHPVHFPLPPFTLIGATTRAGLLAAPLRDRFGIVARMDYY 60

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
              +L  I+ R A +    + ++ A E+A+RSRGTPRIA RLL+RVRDFA+V     I  
Sbjct: 61  TTTELSQIIDRSATIFNTKIQEDGAHELALRSRGTPRIANRLLKRVRDFAQVGGQAAIDP 120

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
              D AL  LA+D  G D++D + LT +  ++ GGPVGI TI+A + E  + IE++ EPY
Sbjct: 121 ATVDRALDLLAVDDQGLDEIDRKLLTTMIEHYHGGPVGIRTIAANIGEEVNTIEEMYEPY 180

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           ++Q GF+ RTPRGR++ P A++HL I    
Sbjct: 181 LLQIGFLMRTPRGRVVTPAAYEHLKIPFDQ 210


>gi|313665318|ref|YP_004047189.1| holliday junction DNA helicase RuvB C-terminal domain protein
           [Mycoplasma leachii PG50]
 gi|312949948|gb|ADR24544.1| holliday junction DNA helicase RuvB C-terminal domain protein
           [Mycoplasma leachii PG50]
          Length = 307

 Score =  232 bits (591), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 103/307 (33%), Positives = 182/307 (59%), Gaps = 3/307 (0%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           + RP   EE+ GQ     NLKVFI++AK + + +DH+   GP G GKT+LA ++A++L  
Sbjct: 1   MFRPEKWEEYIGQNNILDNLKVFIKSAKKQNKVVDHIFIYGPSGYGKTSLAYLLAKQLKT 60

Query: 81  NFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           N R  +G  + KA D+ ++LT+++++DVLFIDEIH ++  + EI+YP +E+ +L++++G+
Sbjct: 61  NIRILNGSNLQKASDIISILTSIKEKDVLFIDEIHAVNKEILEIIYPVLEENKLNIIIGK 120

Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
             +++ V I+L +FT++ ATT +  +  PL +RF I   +  Y +ED+  IV+       
Sbjct: 121 DYNSKVVNIDLPKFTIVCATTEINKMPIPLLNRFPINFTMQEYNLEDMSKIVELYCNKFQ 180

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGF 260
           + +  +    +A   R TPRIA  L++R++D     + K I        L +L I ++G 
Sbjct: 181 IKLDQDIYLYLASFCRKTPRIAINLIKRIKDHIICDNPKKIDIHYIKKVLEKLEIYELGL 240

Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320
              ++ YL MIA+N     +G++ I+  L+     I + IEP++I++  I RT +GR + 
Sbjct: 241 TVTEINYLKMIAKNKR---IGLDNIAHLLNTTPLIIANNIEPFLIRENLIIRTIKGREIT 297

Query: 321 PIAWQHL 327
               +++
Sbjct: 298 YKGLKYI 304


>gi|325973631|ref|YP_004250695.1| holliday junction ATP-dependent DNA helicase, RuvB [Mycoplasma suis
           str. Illinois]
 gi|325990083|ref|YP_004249782.1| Holliday junction ATP-dependent DNA helicase RuvB [Mycoplasma suis
           KI3806]
 gi|323575168|emb|CBZ40830.1| Holliday junction ATP-dependent DNA helicase RuvB [Mycoplasma suis]
 gi|323652233|gb|ADX98315.1| holliday junction ATP-dependent DNA helicase, RuvB [Mycoplasma suis
           str. Illinois]
          Length = 319

 Score =  231 bits (590), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 111/306 (36%), Positives = 175/306 (57%), Gaps = 6/306 (1%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP  L EF G+ E   +L++ IE AK   + L+H L  GPPG+GKT+LAQ++A E+ VN 
Sbjct: 9   RPTNLSEFIGKPEIVKSLRIGIEVAKKLNKPLEHTLLYGPPGVGKTSLAQIIANEMEVNI 68

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGP 142
           +      I    DL  +L +L D DVLFIDEIH L +   E+LY A+ED  LDL++G+  
Sbjct: 69  KIVPSTNIQTLPDLIGILNSLNDFDVLFIDEIHSLKLEYSEMLYSALEDNVLDLLIGKNY 128

Query: 143 SARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLA 202
           +++++++NL +FTLIAATT +G L   L++RFG    ++ Y  E+L  +++R  K+  L 
Sbjct: 129 NSKTIRVNLPKFTLIAATTNLGALPKALEERFGYVFFIDCYTEEELIVLIKRVTKMWNLE 188

Query: 203 VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQ 262
           ++++    I   SRG PR A R+LRRV D+  + +            +       MG  +
Sbjct: 189 LSEKEILTIVYNSRGIPRNANRILRRVLDYKTINNE-----CEIQEIIKECGFIYMGLTE 243

Query: 263 LDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPI 322
            D++YL  +  +      GI++I  G +     +   IEPY++ +G+I +T +GR+L   
Sbjct: 244 TDIKYLNFLKESLN-FTSGIKSIVQGTNIDESTLIKKIEPYLVSKGYISKTNKGRILTDS 302

Query: 323 AWQHLG 328
             + LG
Sbjct: 303 GEKILG 308


>gi|31544807|ref|NP_853385.1| Holliday junction ATP-dependent DNA helicase RuvB [Mycoplasma
           gallisepticum str. R(low)]
 gi|31541653|gb|AAP56953.1| Holliday junction ATP-dependent DNA helicase ruvB [Mycoplasma
           gallisepticum str. R(low)]
 gi|284930881|gb|ADC30820.1| Holliday junction ATP-dependent DNA helicase ruvB [Mycoplasma
           gallisepticum str. R(high)]
          Length = 306

 Score =  231 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 114/309 (36%), Positives = 178/309 (57%), Gaps = 14/309 (4%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP   +EF G+ E    L  FI A+ ++ +ALDHVLF GPPG+GKT+LAQ++A EL    
Sbjct: 5   RPNNFDEFIGKNELKQKLLTFINASISQNKALDHVLFYGPPGVGKTSLAQIIANELKSKI 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGP 142
           +      I K  DL    + L   DVLFIDEIH LS  + E+L+P MED+ +D+++G+  
Sbjct: 65  KILQASQIQKPADLLNAFSLLSKNDVLFIDEIHSLSPTIMELLFPIMEDYVVDILIGKEF 124

Query: 143 SARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLA 202
           +++  ++ L  FTLI ATT  G + +PL++RFGI ++L++Y+ +++  I++       + 
Sbjct: 125 NSKFTRMKLPPFTLIGATTMYGRIIDPLEERFGILLQLDYYQDDEIFEIIRSINAKEKIK 184

Query: 203 VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA-LLRLAIDKMGFD 261
           +T +   +IA  S+GTPR A R+ +RV DF      K   +EI   + L +L I + G  
Sbjct: 185 LTKDEMVQIAEHSKGTPRNALRIYKRVMDF------KLFDQEITIKSILEKLNIYQYGLS 238

Query: 262 QLDLRYLTMIARNFGGGP---VGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRL 318
            LDL YL      F   P   +G++++S         IE  IEPY+++   I++T +GR 
Sbjct: 239 NLDLEYLKS----FDDNPKLYLGLKSLSLISGIDCFTIESKIEPYLLKMNLIKKTSKGRQ 294

Query: 319 LMPIAWQHL 327
           +   A Q+ 
Sbjct: 295 ITQKAIQYF 303


>gi|284931637|gb|ADC31575.1| Holliday junction ATP-dependent DNA helicase ruvB [Mycoplasma
           gallisepticum str. F]
          Length = 306

 Score =  229 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 113/309 (36%), Positives = 178/309 (57%), Gaps = 14/309 (4%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP   +EF G+ E    L  FI A+ ++ +ALDHVLF GPPG+GKT+LAQ++A EL    
Sbjct: 5   RPNNFDEFIGKNELKQKLLTFINASISQNKALDHVLFYGPPGVGKTSLAQIIANELKSKI 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGP 142
           +      I K  DL    + L   DVLFIDEIH LS  + E+L+P MED+ +D+++G+  
Sbjct: 65  KILQASQIQKPADLLNAFSLLSKNDVLFIDEIHSLSPTIMELLFPIMEDYVVDILIGKEF 124

Query: 143 SARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLA 202
           +++  ++ L  FTLI ATT  G + +PL++RFGI ++L++Y+ +++  I++       + 
Sbjct: 125 NSKFTRMKLPPFTLIGATTMYGRIIDPLEERFGILLQLDYYQDDEIFEIIRSINVKEKIE 184

Query: 203 VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA-LLRLAIDKMGFD 261
           +T +   +IA  S+GTPR A R+ +RV DF      K   +EI   + L +L I + G  
Sbjct: 185 LTKDEMVQIAEHSKGTPRNALRIYKRVMDF------KLFDQEITIKSILEKLNIYQFGLS 238

Query: 262 QLDLRYLTMIARNFGGGP---VGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRL 318
            LDL YL      F   P   +G++++S         IE  IEPY+++   I++T +GR 
Sbjct: 239 NLDLEYLKS----FDDNPKLYLGLKSLSLISGIDCFTIESKIEPYLLKMNLIKKTSKGRQ 294

Query: 319 LMPIAWQHL 327
           +   A ++ 
Sbjct: 295 ITQKAIKYF 303


>gi|42561076|ref|NP_975527.1| Holliday junction DNA helicase RuvB [Mycoplasma mycoides subsp.
           mycoides SC str. PG1]
 gi|42492573|emb|CAE77169.1| Holliday junction DNA helicase RuvB [Mycoplasma mycoides subsp.
           mycoides SC str. PG1]
 gi|301321164|gb|ADK69807.1| Holliday junction DNA helicase RuvB [Mycoplasma mycoides subsp.
           mycoides SC str. Gladysdale]
          Length = 307

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 103/307 (33%), Positives = 181/307 (58%), Gaps = 3/307 (0%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           + RP   EE+ GQ     NLKVFI++AK + + +DH+   GP G GKT+LA ++A++L  
Sbjct: 1   MFRPEKWEEYIGQTNILDNLKVFIKSAKKQNKVVDHIFIYGPSGYGKTSLAYLLAKQLKT 60

Query: 81  NFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           N R  +GP + KA D+ ++LT+++++DVLFIDEIH ++  V EI+YP +E+ +L++++G+
Sbjct: 61  NIRILNGPNLQKASDIISILTSIKEKDVLFIDEIHAVNKEVLEIIYPVLEENKLNIIIGK 120

Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
             +++ V I+L +FT+I ATT +  +  PL +RF I   +  Y +ED+  I++       
Sbjct: 121 DYNSKVVNIDLPKFTIICATTEINKIPLPLLNRFPINFTMQEYNLEDMSKIIELYCNKFQ 180

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGF 260
           + +  +    +A   R TPRIA  L++R++D     + K I        L +L I ++G 
Sbjct: 181 IKLDQDIYLYLASFCRKTPRIAINLIKRIKDHIICDNPKIIDVNYIKKVLDKLEIYELGL 240

Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320
              ++ YL MI +N     +G++ I+  L+     I + IEP++I++  I RT + R + 
Sbjct: 241 TITEINYLKMITKNKR---IGLDNIAHLLNTTPLIIANNIEPFLIRESLIIRTIKEREIT 297

Query: 321 PIAWQHL 327
               +++
Sbjct: 298 YKGLKYI 304


>gi|213609155|ref|ZP_03368981.1| Holliday junction DNA helicase B [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 203

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 124/203 (61%), Positives = 158/203 (77%), Gaps = 1/203 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S   +  ED     +RP+ L E+ GQ +  S +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRLISAGATIAEDVADRAIRPKLLAEYVGQPQVRSQMEIFIQAAKRRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLA 202
           L FY++ DL+ IV R A+  GL 
Sbjct: 181 LEFYQVPDLQHIVGRSARHMGLE 203


>gi|213580454|ref|ZP_03362280.1| Holliday junction DNA helicase B [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
 gi|289824022|ref|ZP_06543620.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
          Length = 201

 Score =  226 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 123/201 (61%), Positives = 157/201 (78%), Gaps = 1/201 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S   +  ED     +RP+ L E+ GQ +  S +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRLISAGATIAEDVADRAIRPKLLAEYVGQPQVRSQMEIFIQAAKRRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIVQRGAKLTG 200
           L FY++ DL+ IV R A+  G
Sbjct: 181 LEFYQVPDLQHIVGRSARHMG 201


>gi|121730272|ref|ZP_01682648.1| Holliday junction DNA helicase RuvB [Vibrio cholerae V52]
 gi|121627974|gb|EAX60535.1| Holliday junction DNA helicase RuvB [Vibrio cholerae V52]
          Length = 203

 Score =  224 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 121/203 (59%), Positives = 157/203 (77%), Gaps = 3/203 (1%)

Query: 1   MMDREGLL---SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M++ + L+   S +   E+     +RP+ L ++ GQ      +++FI+AA+ R EALDH+
Sbjct: 1   MIEADRLIAPISNHFKDEEVIDRAIRPKKLADYQGQDHVRDQMEIFIQAAQMRQEALDHL 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRL
Sbjct: 61  LIFGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           S +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI 
Sbjct: 121 SPMVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIV 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTG 200
            RL +Y++ DL+ IVQR A+  G
Sbjct: 181 QRLEYYKVADLQHIVQRSAQCLG 203


>gi|26553732|ref|NP_757666.1| Holliday junction DNA helicase B [Mycoplasma penetrans HF-2]
 gi|26453739|dbj|BAC44070.1| holliday junction DNA helicase [Mycoplasma penetrans HF-2]
          Length = 322

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 103/302 (34%), Positives = 177/302 (58%), Gaps = 9/302 (2%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L++F G+    +NL  +I+++K R E LDH LF GP G+GKTTLA++++ EL  N
Sbjct: 6   IRPQYLKDFCGKNNIKNNLLAYIDSSKNRNECLDHCLFYGPAGVGKTTLAKIISNELSQN 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            +   GP I +  D+  L+ +L +  ++FIDE+H ++    E+LY AMEDF++++ +G+ 
Sbjct: 66  IKIVQGPEIQEKTDILNLIYSLNENSIIFIDEVHSINPKCFELLYSAMEDFEINIEIGKD 125

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            + +   +++ +FTLI ATT++G L  P ++RFGI I ++ Y  +++  I+    K   +
Sbjct: 126 FNKKLTTVSIPKFTLIGATTKLGNLPAPFEERFGIVINISEYTEKEIYKILDFSLKQCDI 185

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            V  +    I+ RS+G PRIA R+L R  D +  ++    T       L  + + + G +
Sbjct: 186 KVDKKVLEIISHRSKGIPRIAKRILARYLDHSLTSNNTAETI------LKNIGVYEKGLN 239

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           ++DL YL  I  N     +G++T+S  L+     I + IEP++I+  FI +T  GR+L  
Sbjct: 240 EIDLSYLLCIYENTK---LGLKTLSQILNVDEKTIIEKIEPFLIKNNFISKTINGRILTD 296

Query: 322 IA 323
             
Sbjct: 297 NG 298


>gi|227549155|ref|ZP_03979204.1| Holliday junction DNA helicase B [Corynebacterium lipophiloflavum
           DSM 44291]
 gi|227078775|gb|EEI16738.1| Holliday junction DNA helicase B [Corynebacterium lipophiloflavum
           DSM 44291]
          Length = 247

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 114/223 (51%), Positives = 161/223 (72%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           +  ++ E      LRP++L EF GQ +    L + +  A+ R+   DH+L  GPPGLGKT
Sbjct: 25  ATELADERDVEKSLRPKSLGEFIGQPKVREQLNLVLTGARRRSLTPDHILLSGPPGLGKT 84

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           T+A ++A+ELG + R TSGP + +AGDLAA+L+NL + DVLFIDEIHR++   EE+LY A
Sbjct: 85  TMAMIIAQELGTSLRMTSGPALERAGDLAAMLSNLMEGDVLFIDEIHRIARPAEEMLYMA 144

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           MEDF++D++VG+GP A S+ + +  FTL+ ATTR G+LT PL+DRFG   ++ FY+++DL
Sbjct: 145 MEDFRIDVIVGKGPGATSIPLEIPPFTLVGATTRAGMLTGPLRDRFGFTAQMEFYDVDDL 204

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            +++ R A +  + +T +AA EIA RSRGTPRIA RLLRRVRD
Sbjct: 205 TSVITRAATILDVDITADAAVEIASRSRGTPRIANRLLRRVRD 247


>gi|323247806|gb|EGA31744.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323255034|gb|EGA38822.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
          Length = 193

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 120/193 (62%), Positives = 153/193 (79%), Gaps = 1/193 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S   +  ED     +RP+ L E+ GQ +  S +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRLISAGATIAEDVADRAIRPKFLAEYVGQPQVRSQMEIFIQAAKLRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEIHRLS 
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DRFGI  R
Sbjct: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180

Query: 180 LNFYEIEDLKTIV 192
           L FY++ DL+ IV
Sbjct: 181 LEFYQVPDLQHIV 193


>gi|167973719|ref|ZP_02555996.1| holliday junction DNA helicase RuvB [Ureaplasma urealyticum serovar
           11 str. ATCC 33695]
 gi|167975816|ref|ZP_02558093.1| holliday junction DNA helicase RuvB [Ureaplasma urealyticum serovar
           12 str. ATCC 33696]
 gi|167987906|ref|ZP_02569577.1| holliday junction DNA helicase RuvB [Ureaplasma urealyticum serovar
           7 str. ATCC 27819]
 gi|168362931|ref|ZP_02696105.1| holliday junction DNA helicase RuvB [Ureaplasma urealyticum serovar
           13 str. ATCC 33698]
 gi|195867808|ref|ZP_03079808.1| holliday junction DNA helicase RuvB [Ureaplasma urealyticum serovar
           9 str. ATCC 33175]
 gi|198273848|ref|ZP_03206382.1| holliday junction DNA helicase RuvB [Ureaplasma urealyticum serovar
           4 str. ATCC 27816]
 gi|225550951|ref|ZP_03771900.1| holliday junction DNA helicase RuvB [Ureaplasma urealyticum serovar
           2 str. ATCC 27814]
 gi|225551197|ref|ZP_03772143.1| holliday junction DNA helicase RuvB [Ureaplasma urealyticum serovar
           8 str. ATCC 27618]
 gi|171903160|gb|EDT49449.1| holliday junction DNA helicase RuvB [Ureaplasma urealyticum serovar
           13 str. ATCC 33698]
 gi|188019069|gb|EDU57109.1| holliday junction DNA helicase RuvB [Ureaplasma urealyticum serovar
           7 str. ATCC 27819]
 gi|188998029|gb|EDU67126.1| holliday junction DNA helicase RuvB [Ureaplasma urealyticum serovar
           11 str. ATCC 33695]
 gi|195660168|gb|EDX53548.1| holliday junction DNA helicase RuvB [Ureaplasma urealyticum serovar
           12 str. ATCC 33696]
 gi|195660505|gb|EDX53762.1| holliday junction DNA helicase RuvB [Ureaplasma urealyticum serovar
           9 str. ATCC 33175]
 gi|198249603|gb|EDY74385.1| holliday junction DNA helicase RuvB [Ureaplasma urealyticum serovar
           4 str. ATCC 27816]
 gi|225379012|gb|EEH01377.1| holliday junction DNA helicase RuvB [Ureaplasma urealyticum serovar
           8 str. ATCC 27618]
 gi|225380105|gb|EEH02467.1| holliday junction DNA helicase RuvB [Ureaplasma urealyticum serovar
           2 str. ATCC 27814]
          Length = 312

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 102/306 (33%), Positives = 172/306 (56%), Gaps = 9/306 (2%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+ L++F G+ +  SNLK+++ A K    + DH L  G  G GKTTLA ++A E+GV+ 
Sbjct: 8   RPQYLKDFIGKDQLKSNLKIYLNATKRLKSSFDHTLLHGLAGTGKTTLATIIANEMGVDC 67

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGP 142
             T G ++ K  D+  LL+ +++ DV+F+DEIH   +   E LY  +EDF +D+ +G+  
Sbjct: 68  HMTQGNLLNKPVDIINLLSLIKENDVIFVDEIHACGLAAFETLYSVLEDFCIDISIGKDF 127

Query: 143 SARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKL-TGL 201
           +A+  ++ +  FTLI ATT +G +  PL++RFG    L+ YE  ++  I+ +  ++   +
Sbjct: 128 NAKMTRLKVPHFTLIGATTMLGKIPKPLEERFGHVFYLSEYETSEIAAIILKNNQIHFQI 187

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + D+    IA  ++G PR+A RLL+RV DF      K    +       ++ I   G +
Sbjct: 188 NLNDQEIDLIANSAKGIPRLANRLLKRVVDF------KINGFDNIKNIFEKIQIYDFGLE 241

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           + D+ YL ++ +      +G+++I+  L   +  IE  IEPY+IQ  FI +  RGR +  
Sbjct: 242 EQDINYLNVLYQ--QENEIGLKSIAQILRLDQYTIETKIEPYLIQHHFINKNLRGRKITA 299

Query: 322 IAWQHL 327
              + L
Sbjct: 300 KGIEFL 305


>gi|167972862|ref|ZP_02555139.1| holliday junction DNA helicase RuvB [Ureaplasma urealyticum serovar
           5 str. ATCC 27817]
 gi|184209206|gb|EDU06249.1| holliday junction DNA helicase RuvB [Ureaplasma urealyticum serovar
           5 str. ATCC 27817]
          Length = 312

 Score =  220 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 102/306 (33%), Positives = 172/306 (56%), Gaps = 9/306 (2%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+ L++F G+ +  SNLK+++ A K    + DH L  G  G GKTTLA ++A E+GV+ 
Sbjct: 8   RPQYLKDFIGKDQLKSNLKIYLNATKRLKSSFDHTLLHGLAGTGKTTLATIIANEMGVDC 67

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGP 142
             T G ++ K  D+  LL+ +++ DV+F+DEIH   +   E LY  +EDF +D+ +G+  
Sbjct: 68  NMTQGNLLNKPVDIINLLSLIKENDVIFVDEIHACGLAAFETLYSVLEDFCIDISIGKDF 127

Query: 143 SARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKL-TGL 201
           +A+  ++ +  FTLI ATT +G +  PL++RFG    L+ YE  ++  I+ +  ++   +
Sbjct: 128 NAKMTRLKVPHFTLIGATTMLGKIPKPLEERFGHVFYLSEYETSEIAAIILKNNQIHFQI 187

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + D+    IA  ++G PR+A RLL+RV DF      K    +       ++ I   G +
Sbjct: 188 NLNDQEIDLIANSAKGIPRLANRLLKRVVDF------KINGFDNIKNIFEKIQIYDFGLE 241

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           + D+ YL ++ +      +G+++I+  L   +  IE  IEPY+IQ  FI +  RGR +  
Sbjct: 242 EQDINYLNVLYQ--QENEIGLKSIAQILRLDQYTIETKIEPYLIQHHFINKNLRGRKITA 299

Query: 322 IAWQHL 327
              + L
Sbjct: 300 KGIEFL 305


>gi|209554525|ref|YP_002284875.1| Holliday junction DNA helicase RuvB [Ureaplasma urealyticum serovar
           10 str. ATCC 33699]
 gi|226698787|sp|B5ZBT5|RUVB_UREU1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|209542026|gb|ACI60255.1| holliday junction DNA helicase RuvB [Ureaplasma urealyticum serovar
           10 str. ATCC 33699]
          Length = 312

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 102/306 (33%), Positives = 172/306 (56%), Gaps = 9/306 (2%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+ L++F G+ +  SNLK+++ A K    + DH L  G  G GKTTLA ++A E+GV+ 
Sbjct: 8   RPQYLKDFIGKDQLKSNLKIYLNATKRLKSSFDHTLLHGLAGTGKTTLATIIANEMGVDC 67

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGP 142
             T G ++ K  D+  LL+ +++ DV+F+DEIH   +   E LY  +EDF +D+ +G+  
Sbjct: 68  HMTQGNLLNKPVDIINLLSLIKENDVIFVDEIHACGLAAFETLYSVLEDFCIDISIGKDF 127

Query: 143 SARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKL-TGL 201
           +A+  ++ +  FTLI ATT +G +  PL++RFG    L+ YE  ++  I+ +  ++   +
Sbjct: 128 NAKMTRLKVPHFTLIGATTMLGKIPEPLEERFGHVFYLSEYETSEIAAIILKNNQIHFQI 187

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + D+    IA  ++G PR+A RLL+RV DF      K    +       ++ I   G +
Sbjct: 188 NLNDQEIDLIANSAKGIPRLANRLLKRVVDF------KINGFDNIKNIFEKIQIYDFGLE 241

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           + D+ YL ++ +      +G+++I+  L   +  IE  IEPY+IQ  FI +  RGR +  
Sbjct: 242 EQDINYLNVLYQ--QENEIGLKSIAQILRLDQYTIETKIEPYLIQHHFINKNLRGRKITA 299

Query: 322 IAWQHL 327
              + L
Sbjct: 300 KGIEFL 305


>gi|50365238|ref|YP_053663.1| Holliday junction DNA helicase B [Mesoplasma florum L1]
 gi|50363794|gb|AAT75779.1| holliday junction DNA helicase [Mesoplasma florum L1]
          Length = 315

 Score =  219 bits (558), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 92/305 (30%), Positives = 166/305 (54%), Gaps = 3/305 (0%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP    E+ GQ +   NLK+ IE++  + + LD ++F GP G+GKT+LA ++++ L    
Sbjct: 6   RPSKWSEYIGQEKVIKNLKICIESSIKQNKVLDPIIFSGPSGMGKTSLAYLLSKILKTKI 65

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGP 142
              +GP + +  DL ++LT++++  +LFIDE+H +S  + E+LYP +E+ +L +++G+  
Sbjct: 66  HIVNGPSLQRPSDLISVLTSIKENQILFIDEVHSVSKDIMEVLYPVLEENKLSIIIGKEY 125

Query: 143 SARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLA 202
           +++ V I L  FT+I ATT +  L  P  +RF I   L  Y  +DL  I+          
Sbjct: 126 NSKIVNIKLPNFTIITATTEINKLPFPFLNRFPIQFELEGYNHDDLTKIIINTFNKLQYK 185

Query: 203 VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQ 262
           +  E A  IA  SR  PR+A  L++R+ DF      K ++ +       ++ + + G ++
Sbjct: 186 IEIEQAKIIAKFSRLVPRVAINLVKRIYDFLITEKIKDLSEKNLIWVFKQMGLYEYGLNE 245

Query: 263 LDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPI 322
            DL YL  +  N     + +++++  ++ P   I + +EP  +++  I +T RGR L   
Sbjct: 246 KDLDYLFTLLEN---NTLSLDSLAQIINVPNQTILNNMEPIFLKERLIIKTGRGRQLTNK 302

Query: 323 AWQHL 327
              +L
Sbjct: 303 GKIYL 307


>gi|13508275|ref|NP_110225.1| Holliday junction DNA helicase B [Mycoplasma pneumoniae M129]
 gi|2498874|sp|P75242|RUVB_MYCPN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|1673978|gb|AAB95954.1| Holliday junction DNA helicase RuvB [Mycoplasma pneumoniae M129]
          Length = 307

 Score =  218 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 96/305 (31%), Positives = 182/305 (59%), Gaps = 9/305 (2%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFR 83
           P    EF G+ E  + +++ I+A++     LDH+L  GPPG+GKTTLA+++A E+    +
Sbjct: 8   PNNFAEFVGKQEIINQIQLSIKASRINKAQLDHILLYGPPGVGKTTLARLIASEMNTKLQ 67

Query: 84  STSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPS 143
              G  + +  D    ++ ++  DVLF+DEIH ++  V E+++P M+DF++ +++G+  +
Sbjct: 68  IIQGGHLQRPSDFLNAVSLIKKGDVLFVDEIHAVAPSVMELMFPVMDDFRVQVLIGKDFN 127

Query: 144 ARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAV 203
           ++ V++ ++ FT I ATT+ G + NPL+DRFG+ + +++Y  ++++ IV    +   L +
Sbjct: 128 SKMVEMKVNPFTWIGATTQFGKIINPLEDRFGMILNIDYYSNQEIERIVSIYGEQMELEL 187

Query: 204 TDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL-AIDKMGFDQ 262
             E   +I   S+ TPRIA R+++R+ +       K + ++I  AAL +   I K G   
Sbjct: 188 KPEEITQITQHSKQTPRIAIRIVKRLFE------QKIVNKKIDLAALFKSLMIYKNGLQS 241

Query: 263 LDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPI 322
           +D++YL  +  N    P GI++I + L   +  +E+ IEP+++++  IQ+T +GR++   
Sbjct: 242 IDVQYLKAL--NGQYEPQGIKSICSMLGIDKSTVENKIEPFLLRENMIQKTKKGRIITRT 299

Query: 323 AWQHL 327
              +L
Sbjct: 300 GRNYL 304


>gi|301633613|gb|ADK87167.1| Holliday junction DNA helicase RuvB [Mycoplasma pneumoniae FH]
          Length = 307

 Score =  218 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 97/305 (31%), Positives = 183/305 (60%), Gaps = 9/305 (2%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFR 83
           P    EF G+ E  + +++ I+A++     LDH+L  GPPG+GKTTLA+++A E+    +
Sbjct: 8   PNNFAEFVGKQEIINQIQLSIKASRINKAQLDHILLYGPPGVGKTTLARLIASEMNTKLQ 67

Query: 84  STSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPS 143
              G  + +  D    ++ ++  DVLF+DEIH ++  V E+++P M+DF++ +++G+  +
Sbjct: 68  IIQGGHLQRPSDFLNAVSLIKKGDVLFVDEIHAVAPSVMELMFPVMDDFRVQVLIGKDFN 127

Query: 144 ARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAV 203
           ++ V++ ++ FTLI ATT+ G + NPL+DRFG+ + +++Y  ++++ IV    +   L +
Sbjct: 128 SKMVEMKVNPFTLIGATTQFGKIINPLEDRFGMILNIDYYSNQEIERIVSIYGEQMELEL 187

Query: 204 TDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL-AIDKMGFDQ 262
             E   +I   S+ TPRIA R+++R+ +       K + ++I  AAL +   I K G   
Sbjct: 188 KPEEITQITQHSKQTPRIAIRIVKRLFE------QKIVNKKIDLAALFKSLMIYKNGLQS 241

Query: 263 LDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPI 322
           +D++YL  +  N    P GI++I + L   +  +E+ IEP+++++  IQ+T +GR++   
Sbjct: 242 IDVQYLKAL--NGQYEPQGIKSICSMLGIDKSTVENKIEPFLLRENMIQKTKKGRIITRT 299

Query: 323 AWQHL 327
              +L
Sbjct: 300 GRNYL 304


>gi|13358011|ref|NP_078285.1| Holliday junction DNA helicase B [Ureaplasma parvum serovar 3 str.
           ATCC 700970]
 gi|168281626|ref|ZP_02689293.1| holliday junction DNA helicase RuvB [Ureaplasma parvum serovar 14
           str. ATCC 33697]
 gi|170762291|ref|YP_001752533.1| Holliday junction DNA helicase RuvB [Ureaplasma parvum serovar 3
           str. ATCC 27815]
 gi|20140319|sp|Q9PQ42|RUVB_UREPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|189046056|sp|B1AJ89|RUVB_UREP2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|11277827|pir||F82889 holliday junction DNA helicase UU448 [imported] - Ureaplasma
           urealyticum
 gi|6899440|gb|AAF30860.1|AE002141_6 holliday junction DNA helicase [Ureaplasma parvum serovar 3 str.
           ATCC 700970]
 gi|168827868|gb|ACA33130.1| holliday junction DNA helicase RuvB [Ureaplasma parvum serovar 3
           str. ATCC 27815]
 gi|182675948|gb|EDT87853.1| holliday junction DNA helicase RuvB [Ureaplasma parvum serovar 14
           str. ATCC 33697]
          Length = 312

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 104/306 (33%), Positives = 169/306 (55%), Gaps = 9/306 (2%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+ L++F G+ +  +NLKV++ A+K    + DH L  G  G GKTTLA ++A E+ VN 
Sbjct: 8   RPQYLKDFIGKEQLKNNLKVYLTASKRLENSFDHTLLHGLSGTGKTTLALIIANEMNVNC 67

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGP 142
             T G ++ K  D+  LL+ +++ DV+FIDEIH   +   E LY  +EDF +D+ +G+  
Sbjct: 68  HITQGNLLNKPIDIINLLSLIKENDVVFIDEIHACGLGAFETLYSVLEDFCIDINIGKDF 127

Query: 143 SARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKL-TGL 201
           +++  ++ +  FTLI ATT  G +   L++RFG    LN YE  ++  I+ +  ++   +
Sbjct: 128 NSKMTRLKIPHFTLIGATTIFGKIPKSLEERFGHIFHLNEYEPSEISAIILKNNQMHFQI 187

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + +E    IA  ++G PR+A RLL+RV DF      K            ++ I + G D
Sbjct: 188 DLNEEEIDLIANNAKGIPRLANRLLKRVVDF------KINGFNDIKNIFKKIQIYEFGLD 241

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMP 321
           + D+ YL ++ R      +G+++I+  L   +  IE  IEPY+IQ  FI +  RGR +  
Sbjct: 242 EQDINYLNVLYR--QDNEIGLKSIAQILRLDQYTIETKIEPYLIQHHFINKNLRGRKITI 299

Query: 322 IAWQHL 327
                L
Sbjct: 300 EGIDFL 305


>gi|12045219|ref|NP_073030.1| Holliday junction DNA helicase RuvB [Mycoplasma genitalium G37]
 gi|255660280|ref|ZP_05405689.1| Holliday junction DNA helicase RuvB [Mycoplasma genitalium G37]
 gi|2498873|sp|Q49425|RUVB_MYCGE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|3844943|gb|AAC71584.1| Holliday junction DNA helicase RuvB [Mycoplasma genitalium G37]
 gi|166078959|gb|ABY79577.1| Holliday junction DNA helicase RuvB [synthetic Mycoplasma
           genitalium JCVI-1.0]
          Length = 307

 Score =  214 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 105/305 (34%), Positives = 183/305 (60%), Gaps = 9/305 (2%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFR 83
           P T +EF G+ E  S +++ I+A+K     LDH+L  GPPG+GKTTLA+++A EL    +
Sbjct: 8   PNTFDEFVGKQEIISQIQLSIKASKLNKTQLDHILLYGPPGVGKTTLARLIANELKTKLQ 67

Query: 84  STSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPS 143
              G  + K  D    ++ ++  DVLFIDEIH ++  V E++YP M+ F++ +++G+  +
Sbjct: 68  IIQGGHLQKPSDFLNAISLIKKGDVLFIDEIHAVAPNVMELMYPVMDVFKIQVLIGKDFN 127

Query: 144 ARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAV 203
           ++ V++ ++ FTLI ATT++G + NPL+DRFG+ + +N+Y   +++ +V    K   L +
Sbjct: 128 SKIVEMKVNPFTLIGATTQLGKIINPLEDRFGVILNINYYSNAEIEKMVSIYGKQMKLEL 187

Query: 204 TDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL-AIDKMGFDQ 262
                  I   S+ TPRIA R++RR+ +       K + ++I    L +   I K G   
Sbjct: 188 NSNEISAITEHSKQTPRIAIRIVRRIFE------QKIVNKKIDLEGLFKNLMIYKNGLQS 241

Query: 263 LDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPI 322
           +D++YL ++ R     P GI++IS+ L   R  IE+ IEP+++++  IQ+T +GR++   
Sbjct: 242 IDVQYLEVLNR--QNEPQGIKSISSMLGIDRHTIENKIEPFLLRENMIQKTKKGRIITNS 299

Query: 323 AWQHL 327
             ++L
Sbjct: 300 GREYL 304


>gi|207093068|ref|ZP_03240855.1| Holliday junction DNA helicase B [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 209

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 103/208 (49%), Positives = 152/208 (73%), Gaps = 1/208 (0%)

Query: 4   REGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           +E +++      E +    LRP   E+F GQ +  SNL++ I AAK R E+LDH+LF GP
Sbjct: 2   KERIVNLETLDFETSQEVSLRPNLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGP 61

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           PGLGKT+++ ++A+E+  N + T+ P+I K+GDLAA+LTNL+ +D+LFIDEIHRLS  +E
Sbjct: 62  PGLGKTSISHIIAKEMETNIKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIE 121

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+LYPAMEDF+LD+++G GP+A+++KI+L  FTLI ATTR G+L+NPL+DRFG+  R+ F
Sbjct: 122 EVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQF 181

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACE 210
           Y   +L  I+++ A      + +E+A E
Sbjct: 182 YSPSELALIIKKAAIKLNQDIKEESADE 209


>gi|144900758|emb|CAM77622.1| Holliday junction DNA helicase RuvB [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 195

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 99/177 (55%), Positives = 137/177 (77%)

Query: 156 LIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRS 215
           ++ ATTR GLLT PL++RFGIP R+N+Y  ++L+ IV RGA++ G  VT + A E+A R+
Sbjct: 1   MVGATTRSGLLTTPLRERFGIPCRMNYYXPQELELIVARGARVLGFDVTPDGAAEVARRA 60

Query: 216 RGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNF 275
           RGTPR+AGRLLRRVRDFA VA    +  ++AD AL RL +D+MG D +D RYL  IA N+
Sbjct: 61  RGTPRVAGRLLRRVRDFAAVAGQSPVDAQVADRALTRLEVDQMGLDAMDRRYLKCIADNY 120

Query: 276 GGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           GGGPVG++T++A LSE RD +E+++EPY++QQG IQRTPRGR+L    ++H+G++ P
Sbjct: 121 GGGPVGVDTLAAALSESRDTLEEVVEPYLLQQGLIQRTPRGRMLSAAGFKHIGLNPP 177


>gi|308126387|ref|ZP_07663742.1| holliday junction ATP-dependent DNA helicase RuvB [Vibrio
           parahaemolyticus AQ4037]
 gi|308109586|gb|EFO47126.1| holliday junction ATP-dependent DNA helicase RuvB [Vibrio
           parahaemolyticus AQ4037]
          Length = 201

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 106/176 (60%), Positives = 137/176 (77%), Gaps = 3/176 (1%)

Query: 1   MMDREGLLSRNVS---QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M++ + L++        ED     +RP+ L ++ GQ      +++FI+AA+ R+EALDH+
Sbjct: 1   MIEADRLIAPENPAFRDEDVIDRAIRPKKLADYQGQDHVRDQMEIFIKAAQLRSEALDHL 60

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           L  GPPGLGKTTLA +VA E+ VN R+TSGPV+ KAGDLAALLTNLE+ DVLFIDEIHRL
Sbjct: 61  LIFGPPGLGKTTLANIVANEMEVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRL 120

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           S +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+DR
Sbjct: 121 SPMVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDR 176


>gi|226324737|ref|ZP_03800255.1| hypothetical protein COPCOM_02523 [Coprococcus comes ATCC 27758]
 gi|225207185|gb|EEG89539.1| hypothetical protein COPCOM_02523 [Coprococcus comes ATCC 27758]
          Length = 170

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 79/166 (47%), Positives = 117/166 (70%)

Query: 165 LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGR 224
           +LT PL+DRFG+  RL FY  ++L+TI+ R A +  + + ++ A E+A RSRGTPR+A R
Sbjct: 1   MLTAPLRDRFGVVNRLEFYTEKELQTIIIRSAGVLDVEIDEKGALEMARRSRGTPRLANR 60

Query: 225 LLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIET 284
           LL+RVRDFA+V +   IT E+A  AL  L +D++G D +D   LT +   F GGPVG++T
Sbjct: 61  LLKRVRDFAQVKYEGVITEEVARQALDLLDVDRLGLDHVDRNLLTTMIEKFQGGPVGLDT 120

Query: 285 ISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           ++A + E    +ED+ EPY+++ GF+QRTPRGR++  +A+ HLG D
Sbjct: 121 LAAAIGEDAGTVEDVYEPYLLKNGFLQRTPRGRVVTDLAYTHLGFD 166


>gi|148983662|ref|ZP_01816981.1| Holliday junction DNA helicase B [Streptococcus pneumoniae
           SP3-BS71]
 gi|147923809|gb|EDK74921.1| Holliday junction DNA helicase B [Streptococcus pneumoniae
           SP3-BS71]
          Length = 191

 Score =  196 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 117/190 (61%), Positives = 142/190 (74%)

Query: 50  RAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVL 109
           R EALDHVL  GPPGLGKTT+A V+A ELGVN + TSGPVI KAGDL A+L  LE  DVL
Sbjct: 2   RDEALDHVLLFGPPGLGKTTMAFVIANELGVNLKQTSGPVIEKAGDLVAILNELEPGDVL 61

Query: 110 FIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           FIDEIHRL + VEE+LY AMEDF +D+M+G G  +RSV + L  FTLI ATTR G+L+NP
Sbjct: 62  FIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAGEGSRSVHLELPPFTLIGATTRAGMLSNP 121

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           L+ RFGI   + +Y   DL  IV+R A +  + +T EAA E+A+RSRGTPRIA RLL+RV
Sbjct: 122 LRARFGITGHMEYYAHADLTEIVERTADIFEMEITHEAASELALRSRGTPRIANRLLKRV 181

Query: 230 RDFAEVAHAK 239
           RDFA++    
Sbjct: 182 RDFAQIMGMG 191


>gi|168698683|ref|ZP_02730960.1| Holliday junction DNA helicase RuvB [Gemmata obscuriglobus UQM
           2246]
          Length = 318

 Score =  192 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 99/306 (32%), Positives = 150/306 (49%), Gaps = 10/306 (3%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFR 83
           P +L    GQ      ++V ++AA   A+  DH L  GPPG GKT  A+V+A+E+   F+
Sbjct: 12  PTSLAHLIGQRSVVEQVRVALDAAHQDAKKFDHALLCGPPGCGKTQTAKVIAQEMAGEFQ 71

Query: 84  STSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV-GEGP 142
              G  I    DL ALL   +DRDV+ +DE H L    +  LY A++  ++ L   G  P
Sbjct: 72  EVLGQAIQSPADLNALLLGAKDRDVILLDEAHELDREYQTALYLAIDQRRVLLQTKGRTP 131

Query: 143 SARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLA 202
            A    I L+ FTL+ ATT    L  PL+DR  + +R  FY  E+L  ++++ A      
Sbjct: 132 QA----IPLADFTLLLATTDEFKLLQPLRDRMRLCLRFGFYSAEELAELIRQRAAALAWD 187

Query: 203 VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQ 262
           V       IA RSRGTPR+A RLL+  R        + +T    + A L   ID +G   
Sbjct: 188 VDVNVYRPIAARSRGTPRLALRLLQAARRVCRSQGDERVTGVHLERACLLEGIDGLGLGP 247

Query: 263 LDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRL-LMP 321
            + +YL ++      G   +  I++ L  P   + ++ EP++I+ G + +  +GR  L  
Sbjct: 248 TEQQYLAVLGE----GANRLNVIASRLGLPTRTVAEVTEPFLIRAGLVAKDDQGRRQLTA 303

Query: 322 IAWQHL 327
               H 
Sbjct: 304 EGRDHF 309


>gi|309799475|ref|ZP_07693706.1| holliday junction ATP-dependent DNA helicase RuvB [Streptococcus
           infantis SK1302]
 gi|308116889|gb|EFO54334.1| holliday junction ATP-dependent DNA helicase RuvB [Streptococcus
           infantis SK1302]
          Length = 183

 Score =  190 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 99/163 (60%), Positives = 123/163 (75%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +  E+     LRP+ L E+ GQ +    L++FIEAAK R EALDHVL  GPPGLGKTT+A
Sbjct: 10  MGDEELVERTLRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMA 69

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            V+A ELGVN + TSGPVI KAGDL A+L +LE  DVLFIDEIHRL + VEE+LY AMED
Sbjct: 70  FVIANELGVNLKQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMED 129

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRF 174
           F +D+M+G G ++RSV ++L  FTLI ATTR G+L+NPL+ RF
Sbjct: 130 FYIDIMIGAGEASRSVHLDLPPFTLIGATTRAGMLSNPLRARF 172


>gi|300703422|ref|YP_003745024.1| replicatioN-associated recombination protein a [Ralstonia
           solanacearum CFBP2957]
 gi|299071085|emb|CBJ42394.1| Replication-associated recombination protein A [Ralstonia
           solanacearum CFBP2957]
          Length = 434

 Score =  186 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 78/329 (23%), Positives = 121/329 (36%), Gaps = 53/329 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP+TL+E  GQ       K    A   ++     ++F GPPG+GKTTLA++ A 
Sbjct: 12  PLAEALRPKTLDEVIGQSHLLGEGKPLRLA--FQSGKPHSMIFWGPPGVGKTTLARLTAS 69

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAME 130
                F + S  V++   D+   +             +LF+DEIHR +   ++ L P +E
Sbjct: 70  AFKCEFIALSA-VLSGVKDIREAMEQARQFLAQGKSTILFVDEIHRFNKSQQDALLPHVE 128

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
                 +    E PS       LSR  +    +                        E+L
Sbjct: 129 SGLFTFIGATTENPSFEVNSALLSRAQVYVLKS---------------------LTDEEL 167

Query: 189 KTIVQRGAK--LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           K ++QR  +  L  L   D+A   I   + G  R    LL + +  A  A  + I  E  
Sbjct: 168 KLLLQRAQEKALGDLEFEDKAVDTIVGYADGDARRFLNLLEQCKTAAGAAGVQKIDAEFI 227

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
             AL   A                  R   GG    + ISA     R +  D    ++ +
Sbjct: 228 QNALSLNA-----------------RRFDKGGDNFYDQISALHKSVRGSHPDAALYWLTR 270

Query: 307 QGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                  PR   R ++ +AW+ +G+  P 
Sbjct: 271 MLDGGADPRYLSRRIVRMAWEDIGLADPR 299


>gi|251789956|ref|YP_003004677.1| recombination factor protein RarA [Dickeya zeae Ech1591]
 gi|247538577|gb|ACT07198.1| AAA ATPase central domain protein [Dickeya zeae Ech1591]
          Length = 434

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 78/326 (23%), Positives = 121/326 (37%), Gaps = 53/326 (16%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
             LRPRTL+E  GQ       K    A   ++     ++F GPPG+GKTTLA++ A    
Sbjct: 15  EALRPRTLDEVIGQSHLLGEGKPLRLA--FQSGKPHSMIFWGPPGVGKTTLARLTANYFD 72

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             F + S  V +   D+ A +   +       + +LF+DEIHR +   ++ L P  E   
Sbjct: 73  CEFIALSA-VFSGVKDIRAAMEQAQQNLDRGKKTILFVDEIHRFNKSQQDALLPYAESGL 131

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           +  +    E PS       LSR  +    +                        ++LK +
Sbjct: 132 VTFIGATTENPSFEVNSALLSRAQVYVLKS---------------------LTEDELKQL 170

Query: 192 VQRGAK--LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
           ++R  K  L  L   D A   I   + G  R    LL +    A  A  + I  E    A
Sbjct: 171 LKRVQKQVLGHLTFEDLAVDTIIGYADGDARRFLSLLEQCATAAGAAGIQVINAEFIGNA 230

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           L   +                  R   GG    + ISA     R +  D    ++ +   
Sbjct: 231 LTLNS-----------------RRFDKGGDNFYDQISALHKSVRGSNPDAALYWLTRMLD 273

Query: 310 IQRTPR--GRLLMPIAWQHLGIDIPH 333
               PR   R ++ +AW+ +G+  P 
Sbjct: 274 GGADPRYLSRRIIRMAWEDIGLADPR 299


>gi|325107531|ref|YP_004268599.1| ATPase AAA [Planctomyces brasiliensis DSM 5305]
 gi|324967799|gb|ADY58577.1| AAA ATPase central domain protein [Planctomyces brasiliensis DSM
           5305]
          Length = 313

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 100/310 (32%), Positives = 149/310 (48%), Gaps = 15/310 (4%)

Query: 25  RTLEEFTGQVEACSNLKVFIEA------AKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
            +L    GQ  A + L+  ++A           EA  H+L  GP G GKT L +++A+EL
Sbjct: 9   TSLNHVVGQQRAVTVLRTALDAYWHDRSKNGGKEAFPHLLMCGPGGTGKTLLTELIAKEL 68

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138
                      I   G +  LL  LE   +L +DEIH LS  V+  LY A+ED +L L  
Sbjct: 69  CTECTVELAQNIGNIGQMQGLLMMLESEHILLVDEIHELSETVQVSLYRAIEDRKLFLGG 128

Query: 139 GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKL 198
              P      + L  FTLI ATT   LLT  ++DRF I +RL  Y  +++  ++ +  + 
Sbjct: 129 NRKP------VTLPPFTLIGATTDEYLLTPSMRDRFKILLRLQHYSHDEMAVLIDQRTRR 182

Query: 199 TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKM 258
            G  +   +   +A RSRG PR+A RLL   +  A       I  +  +  L    ID +
Sbjct: 183 LGWEIDAVSVTHLAARSRGVPRLAVRLLESAKRVASSKGMDRIEPKHVEEMLAIEGIDSL 242

Query: 259 GFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRL 318
           GFD ++ RYL ++  +   GPV +  ++  L  P+  IE + E   I+ G I +  +GR 
Sbjct: 243 GFDPVEQRYLKLLKES--QGPVRLNVLATHLGLPKQTIE-MFERDFIRLGLITKGDKGRA 299

Query: 319 LMPIAWQHLG 328
           L P   +HL 
Sbjct: 300 LTPKGVEHLN 309


>gi|83749188|ref|ZP_00946190.1| ATPase, AAA family [Ralstonia solanacearum UW551]
 gi|207742684|ref|YP_002259076.1| cog2256 atpase related to the helicase subunit of the holliday
           junction resolvase protein [Ralstonia solanacearum
           IPO1609]
 gi|83724129|gb|EAP71305.1| ATPase, AAA family [Ralstonia solanacearum UW551]
 gi|206594078|emb|CAQ61005.1| probable cog2256 atpase related to the helicase subunit of the
           holliday junction resolvase protein [Ralstonia
           solanacearum IPO1609]
          Length = 435

 Score =  182 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 75/327 (22%), Positives = 118/327 (36%), Gaps = 48/327 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP+TL+E  GQ     + K    A   ++     ++F GPPG+GKTTLA++ A 
Sbjct: 12  PLAEALRPKTLDEVIGQSHLLGDGKPLRLA--FQSGKPHSMIFWGPPGVGKTTLARLTAT 69

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAME 130
                F + S  V +   D+ A +   +         +LF+DEIHR +   ++ L P  E
Sbjct: 70  AFKCEFIALSA-VFSGVKDIRAAMEQAQQNLSMGKSTILFVDEIHRFNKSQQDALLPYAE 128

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
              +  +    E PS       LSR  +    +        L  R               
Sbjct: 129 SGLVTFIGATTENPSFEVNSALLSRAQVYVLKSLTEEELKLLLKR--------------- 173

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              VQ    L  L   D+A   I   + G  R    LL + +  A  A  + +  +    
Sbjct: 174 ---VQEEDALGDLEFEDKAVDTIIGYADGDARRFLNLLEQCKTAAGAAGVQHVNSDFIQN 230

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL   +                  R   GG    + ISA     R +  D    ++ +  
Sbjct: 231 ALTLNS-----------------RRFDKGGDNFYDQISALHKSVRGSNPDAALYWLTRML 273

Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIPH 333
                PR   R ++ +AW+ +G+  P 
Sbjct: 274 DGGADPRYLSRRIVRMAWEDIGLADPR 300


>gi|300311231|ref|YP_003775323.1| recombination factor RarA protein [Herbaspirillum seropedicae SmR1]
 gi|300074016|gb|ADJ63415.1| recombination factor RarA protein [Herbaspirillum seropedicae SmR1]
          Length = 434

 Score =  182 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 76/329 (23%), Positives = 119/329 (36%), Gaps = 53/329 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP+TL+E  GQ       K    A   ++     ++F GPPG+GKTTLA++ A 
Sbjct: 12  PLAEALRPKTLDEVIGQSHLLGEGKPLRLA--FQSGKPHSMIFWGPPGVGKTTLARLTAT 69

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAME 130
                F + S  V +   D+ A +   E         +LF+DEIHR +   ++ L P  E
Sbjct: 70  AFECEFIALSA-VFSGVKDIRAAMEQAEQNLAMGKHTILFVDEIHRFNKSQQDALLPYAE 128

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
              +  +    E PS       LSR  +    +                        E+L
Sbjct: 129 SGLVTFIGATTENPSFEVNSALLSRAQVYVLKS---------------------LTDEEL 167

Query: 189 KTIVQRGAK--LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           K +++R     L  L    +A   I   + G  R    LL +    A     + +T E  
Sbjct: 168 KQLLKRAQDKALGDLQFDQQATDTIIGYADGDARRFLNLLEQTDTAARTTGTRLVTAEFL 227

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
             AL   +                  R   GG    + ISA     R +  D    ++ +
Sbjct: 228 QNALTLNS-----------------RRFDKGGDNFYDQISALHKSVRGSHPDAALYWLTR 270

Query: 307 QGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                  PR   R ++ +AW+ +G+  P 
Sbjct: 271 MLDGGADPRYLSRRIVRMAWEDIGLADPR 299


>gi|237755644|ref|ZP_04584257.1| holliday junction ATP-dependent DNA helicase RuvB
           [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237692208|gb|EEP61203.1| holliday junction ATP-dependent DNA helicase RuvB
           [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 196

 Score =  182 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 87/184 (47%), Positives = 130/184 (70%)

Query: 144 ARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAV 203
           A+++++++++FTLI ATTR+G+L+ PL  RFGI + L+FY+ + LK I+ R AK+  + +
Sbjct: 7   AKAIRLDINKFTLIGATTRIGMLSTPLISRFGIILNLDFYDEKSLKEIILRSAKILNINI 66

Query: 204 TDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQL 263
           T+E A EIA  S+GTPRIA +LL+RV D+A +     I RE A  AL  L+I K G D L
Sbjct: 67  TEEGALEIAKHSKGTPRIANKLLKRVYDYAVIHKKDVIDRETAFDALRFLSIGKDGIDGL 126

Query: 264 DLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIA 323
            L+YL  +   F GGPVG+ TIS  +SE +  IE++IEPY+++ GFI+RT +GR+ +P A
Sbjct: 127 SLKYLKSLVYQFNGGPVGLNTISFAISEDKRTIEEVIEPYLLKLGFIKRTAKGRVALPTA 186

Query: 324 WQHL 327
            ++L
Sbjct: 187 VEYL 190


>gi|319778382|ref|YP_004129295.1| ATPase, AAA family [Taylorella equigenitalis MCE9]
 gi|317108406|gb|ADU91152.1| ATPase, AAA family [Taylorella equigenitalis MCE9]
          Length = 458

 Score =  182 bits (461), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 83/337 (24%), Positives = 128/337 (37%), Gaps = 54/337 (16%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
               S        LRP+TLEE  GQ       K    A K  +     ++F GPPG+GKT
Sbjct: 20  DSKTSLNSPLAEKLRPKTLEEVVGQKHLLDKGKPLYTAFK--SGRPHSMIFWGPPGVGKT 77

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFIDEIHRLSIIVE 122
           TLA+++A      F + S  V+    D+   + +      L  + +LF+DE+HR +   +
Sbjct: 78  TLARLMASGFDAKFIAISA-VLGGVKDIRDAVASAKRAQDLGQKTILFVDEVHRFNKAQQ 136

Query: 123 EILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +   P +E      +    E PS       LSR  +         +  PL +        
Sbjct: 137 DAFLPYVESGLFTFIGATTENPSFEVNSALLSRARV--------YVLEPLNEI------- 181

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTD-EAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
                 DLK + +R +K       D +A   I   S G  R     L  V + A V    
Sbjct: 182 ------DLKQLYERASKFYPNTKIDLQALDLIVHWSDGDARRFLNNLEIVLESAVVEEVG 235

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNF-GGGPVGIETISAGLSEPRDAIED 298
             T+E  +                  +YLT  AR F  GG V  + ISA     R +  D
Sbjct: 236 IATKEHIE------------------KYLTQNARRFDKGGEVFYDQISALHKSVRGSDPD 277

Query: 299 LIEPYMIQQ--GFIQRTPRGRLLMPIAWQHLGIDIPH 333
               +  +   G +  +   R ++ +AW+ +G+  P 
Sbjct: 278 AALYWFCRMLDGGVDVSYLSRRIVRMAWEDIGLADPR 314


>gi|5514774|emb|CAB50776.1| RuvB protein [Pseudomonas putida]
          Length = 171

 Score =  182 bits (461), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 85/158 (53%), Positives = 110/158 (69%)

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
             RL FY  +DL TIV R A + GLA+ D+ A EIA R+RGTPRIA RLLRRVRD+AEV 
Sbjct: 1   VQRLEFYNDKDLSTIVSRSANILGLAIEDQGAYEIARRARGTPRIANRLLRRVRDYAEVR 60

Query: 237 HAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAI 296
               IT+ +AD AL  L +D+ GFD  D R L  +   F GGPVG++ ++A +SE R  I
Sbjct: 61  GKGQITKAVADMALNLLDVDERGFDHSDRRLLLTMIEKFDGGPVGVDNLAAAISEERHTI 120

Query: 297 EDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           ED++EPY+IQQG+I RTPRGR++   A+ H G++IP R
Sbjct: 121 EDVLEPYLIQQGYIMRTPRGRVVTRHAYLHFGLNIPGR 158


>gi|152980972|ref|YP_001352846.1| recombination factor protein RarA [Janthinobacterium sp. Marseille]
 gi|151281049|gb|ABR89459.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 433

 Score =  181 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 77/329 (23%), Positives = 121/329 (36%), Gaps = 53/329 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP+TL+E  GQ       K    A   ++     ++F GPPG+GKTTLA++ A 
Sbjct: 12  PLAEALRPKTLDEVVGQSHLLGEGKPLRLA--FQSGKPHSMIFWGPPGVGKTTLARLTAS 69

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAME 130
                F + S  V +   D+ A +   E         +LF+DEIHR +   ++ L P  E
Sbjct: 70  AFECEFIALSA-VFSGVKDIRAAMEQAEQNLAMGKHTILFVDEIHRFNKSQQDALLPYAE 128

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
              +  +    E PS       LSR  +    +                        E+L
Sbjct: 129 SGLVTFIGATTENPSFEVNSALLSRAQVYVLKS---------------------LSDEEL 167

Query: 189 KTIVQRGAK--LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           K ++QR  +  L  L   ++A   I   + G  R    LL +    A     K +T +  
Sbjct: 168 KQLLQRAQEKALGDLQFDEQATDTIIGYADGDARRFLNLLEQTNTAANTTGTKKVTADFL 227

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
             AL   +                  R   GG    + ISA     R +  D    ++ +
Sbjct: 228 QNALTLNS-----------------RRFDKGGDNFYDQISALHKSVRGSHPDAALYWLTR 270

Query: 307 QGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                  PR   R ++ +AW+ +G+  P 
Sbjct: 271 MLDGGADPRYLSRRIVRMAWEDIGLADPR 299


>gi|160900791|ref|YP_001566373.1| recombination factor protein RarA [Delftia acidovorans SPH-1]
 gi|160366375|gb|ABX37988.1| AAA ATPase central domain protein [Delftia acidovorans SPH-1]
          Length = 434

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 78/339 (23%), Positives = 123/339 (36%), Gaps = 55/339 (16%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L ++  S        LRP+TL+E  GQ       K    A   ++     ++F GPPG+G
Sbjct: 4   LFTQEPSA--PLAEALRPKTLDEVVGQSHLLGEGKPLRLA--FQSGKPHSMIFWGPPGVG 59

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSII 120
           KTTLA++ A      F + S  V +   D+ A +   +         +LF+DEIHR +  
Sbjct: 60  KTTLARLTATAFKCEFIALSA-VFSGVKDIRAAMEQAQQNLAMGRHTILFVDEIHRFNKS 118

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++ L P  E   +  +    E PS       LSR  +    +                 
Sbjct: 119 QQDALLPYAESGLVTFIGATTENPSFEVNSALLSRAQVYVLQS----------------- 161

Query: 179 RLNFYEIEDLKTIVQRGAK--LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
                  ++L+ ++ R  +  L GL   D A   I   + G  R    LL + +  A  A
Sbjct: 162 ----LTDDELRQLLLRAQEKALGGLEFDDLARDTIVGYADGDARRFLNLLEQCQTAAGAA 217

Query: 237 HAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAI 296
               I  E    AL   A                  R   GG    + ISA     R + 
Sbjct: 218 GVTRIDAEFVQNALTLNA-----------------RRFDKGGDNFYDQISALHKSVRGSH 260

Query: 297 EDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            D    ++ +        R   R ++ +AW+ +G+  P 
Sbjct: 261 PDAALYWLTRMLDGGADARYLSRRIVRMAWEDIGLADPR 299


>gi|326318083|ref|YP_004235755.1| AAA ATPase central domain-containing protein [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323374919|gb|ADX47188.1| AAA ATPase central domain protein [Acidovorax avenae subsp. avenae
           ATCC 19860]
          Length = 434

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 74/329 (22%), Positives = 119/329 (36%), Gaps = 53/329 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP+TL+E  GQ       K    A   ++     ++F GPPG+GKTTLA++ A 
Sbjct: 12  PLAEALRPKTLDEVVGQSHLLGEGKPLRLA--FQSGKPHSMIFWGPPGVGKTTLARLTAT 69

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAME 130
                F + S  V +   D+ A +   +         +LF+DEIHR +   ++ L P  E
Sbjct: 70  AFKCEFIALSA-VFSGVKDIRAAMEQAQQNLAMGKHTILFVDEIHRFNKSQQDALLPYAE 128

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
              +  +    E PS       LSR  +    +                        E+L
Sbjct: 129 SGLVTFIGATTENPSFEVNSALLSRAQVYVLKS---------------------LTDEEL 167

Query: 189 KTIVQRGAKL--TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           K +++R   +    L   D A   I   + G  R    LL +    A+ +    IT +  
Sbjct: 168 KLLLKRAQDIALGHLVFDDLARDTIIGYADGDARRFLNLLEQTSTAAKASGITEITADFL 227

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
             AL   +                  R   GG    + ISA     R +  D    ++ +
Sbjct: 228 QNALTLNS-----------------RRFDKGGDNFYDQISALHKSVRGSHPDAALYWLTR 270

Query: 307 QGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                   R   R ++ +AW+ +G+  P 
Sbjct: 271 MLDGGADARYLSRRIVRMAWEDIGLADPR 299


>gi|299532556|ref|ZP_07045946.1| recombination factor protein RarA [Comamonas testosteroni S44]
 gi|298719503|gb|EFI60470.1| recombination factor protein RarA [Comamonas testosteroni S44]
          Length = 446

 Score =  180 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 77/341 (22%), Positives = 126/341 (36%), Gaps = 60/341 (17%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACS---NLKVFIEAAKARAEALDHVLFVGPPGL 65
           S +          LRP TL E  GQ         L++  E+ +         +  GPPG+
Sbjct: 8   SSSAIPHQPLAERLRPHTLAEVIGQQHVLGEGMPLRLAFESGR-----PHSCILWGPPGV 62

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTN--------LEDRDVLFIDEIHRL 117
           GKTT+A+++A      F S S  V+    D+   +          L+ R ++F+DE+HR 
Sbjct: 63  GKTTIARLMADAFDAQFISISA-VLGGVKDIREAVEQAQAAQSGLLQQRTIVFVDEVHRF 121

Query: 118 SIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
           +   ++   P +E      +    E PS       LSR                      
Sbjct: 122 NKSQQDAFLPHVESGLFTFIGATTENPSFEVNSALLSR---------------------A 160

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEI-AMRSRGTPRIAGRLLRRVRDFAE 234
               L     +DLK IV +   +  +   ++ A E     + G  R     L  +   AE
Sbjct: 161 AVYVLQSLTPDDLKQIVAKAQAIQAIPAIEDEALERLIAYADGDARRLLNTLETLSITAE 220

Query: 235 VAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRD 294
            A  ++IT    DA LL++  ++             + R   GG    +TISA     R 
Sbjct: 221 QAGVQSIT----DAWLLKVLGER-------------MRRYDKGGEQFYDTISALHKSVRG 263

Query: 295 AIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +  D    +  +       PR   R ++ +AW+ +G+  P 
Sbjct: 264 SDPDAALYWFCRMLDGGADPRYLARRIVRMAWEDIGLADPR 304


>gi|319761904|ref|YP_004125841.1| aaa atpase central domain protein [Alicycliphilus denitrificans BC]
 gi|317116465|gb|ADU98953.1| AAA ATPase central domain protein [Alicycliphilus denitrificans BC]
          Length = 437

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 80/339 (23%), Positives = 124/339 (36%), Gaps = 54/339 (15%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           +    S        LRPRTL E  GQ            A +  +      +  GPPG+GK
Sbjct: 1   MKPAASTHQPLAERLRPRTLGEVVGQQHVLGPGMPLRLAFE--SGRPHSCILWGPPGVGK 58

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE--------DRDVLFIDEIHRLSI 119
           TT+A+++A      F S S  V+    D+   +   E         R ++F+DE+HR + 
Sbjct: 59  TTIARLMAEAFDAQFISISA-VLGGVKDIRDAVQLAESAAGGLMPQRTIVFVDEVHRFNK 117

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             ++   P +E      +    E PS       LSR                        
Sbjct: 118 SQQDAFLPHVESGLFTFVGATTENPSFEVNSALLSR---------------------AAV 156

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEI-AMRSRGTPRIAGRLLRRVRDFAEVA 236
             L     +DLK IV R   +  L   +  A E     + G  R     L  +   AE A
Sbjct: 157 YVLQPLTSDDLKRIVVRAQDIQALPAIENEALERLIAYADGDARRLLNTLETLSVTAEQA 216

Query: 237 HAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAI 296
             +TIT    DA LL++  ++             + R   GG    +TISA     R + 
Sbjct: 217 KVETIT----DAWLLQVLGER-------------MRRYDKGGEQFYDTISALHKSVRGSD 259

Query: 297 EDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            D    ++++       PR   R ++ +AW+ +G+  P 
Sbjct: 260 PDAALYWLVRMLDGGADPRYMARRIVRMAWEDIGLADPR 298


>gi|120610553|ref|YP_970231.1| recombination factor protein RarA [Acidovorax citrulli AAC00-1]
 gi|120589017|gb|ABM32457.1| Recombination protein MgsA [Acidovorax citrulli AAC00-1]
          Length = 462

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 73/329 (22%), Positives = 118/329 (35%), Gaps = 53/329 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP +L+E  GQ       K    A   ++     ++F GPPG+GKTTLA++ A 
Sbjct: 40  PLAEALRPASLDEVIGQSHLLGEGKPLRLA--FQSGKPHSMIFWGPPGVGKTTLARLTAT 97

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAME 130
                F + S  V +   D+ A +   +         +LF+DEIHR +   ++ L P  E
Sbjct: 98  AFQCEFIALSA-VFSGVKDIRAAMEQAQQNLAMGKHTILFVDEIHRFNKSQQDALLPYAE 156

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
              +  +    E PS       LSR  +    +                        E+L
Sbjct: 157 SGLVTFIGATTENPSFEVNSALLSRAQVYVLKS---------------------LTDEEL 195

Query: 189 KTIVQRGAK--LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           + +++R  +  L  L   D A   I   + G  R    LL +    A  +    IT +  
Sbjct: 196 RLLLKRAQEMALGHLRFDDLATDTIIGYADGDARRFLNLLEQTSTAANASGTTAITADFL 255

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
             AL   +                  R   GG    + ISA     R +  D    ++ +
Sbjct: 256 QNALTLNS-----------------RRFDKGGDNFYDQISALHKSVRGSHPDAALYWLTR 298

Query: 307 QGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                   R   R ++ +AW+ +G+  P 
Sbjct: 299 MLDGGADARYLARRIVRMAWEDIGLADPR 327


>gi|264677024|ref|YP_003276930.1| transporter ATM1 precursor [Comamonas testosteroni CNB-2]
 gi|262207536|gb|ACY31634.1| transporter ATM1 precursor [Comamonas testosteroni CNB-2]
          Length = 446

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 77/341 (22%), Positives = 126/341 (36%), Gaps = 60/341 (17%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACS---NLKVFIEAAKARAEALDHVLFVGPPGL 65
           S +          LRP TL E  GQ         L++  E+ +         +  GPPG+
Sbjct: 8   SSSAIPHQPLAERLRPHTLAEVIGQQHVLGEGMPLRLAFESGR-----PHSCILWGPPGV 62

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTN--------LEDRDVLFIDEIHRL 117
           GKTT+A+++A      F S S  V+    D+   +          L+ R ++F+DE+HR 
Sbjct: 63  GKTTIARLMADAFDAQFISISA-VLGGVKDIREAVEQAQAAQSGLLQQRTIVFVDEVHRF 121

Query: 118 SIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
           +   ++   P +E      +    E PS       LSR                      
Sbjct: 122 NKGQQDAFLPHVESGLFTFIGATTENPSFEVNSALLSR---------------------A 160

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEI-AMRSRGTPRIAGRLLRRVRDFAE 234
               L     +DLK IV +   +  +   ++ A E     + G  R     L  +   AE
Sbjct: 161 AVYVLQSLTPDDLKQIVAKAQAIQAIPAIEDEALERLIAYADGDARRLLNTLETLSITAE 220

Query: 235 VAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRD 294
            A  ++IT    DA LL++  ++             + R   GG    +TISA     R 
Sbjct: 221 QAGVQSIT----DAWLLKVLGER-------------MRRYDKGGEQFYDTISALHKSVRG 263

Query: 295 AIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +  D    +  +       PR   R ++ +AW+ +G+  P 
Sbjct: 264 SDPDAALYWFCRMLDGGADPRYLARRIVRMAWEDIGLADPR 304


>gi|260437226|ref|ZP_05791042.1| ATPase, AAA family [Butyrivibrio crossotus DSM 2876]
 gi|292810539|gb|EFF69744.1| ATPase, AAA family [Butyrivibrio crossotus DSM 2876]
          Length = 446

 Score =  179 bits (454), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 83/343 (24%), Positives = 136/343 (39%), Gaps = 44/343 (12%)

Query: 2   MDREGLLSRN-VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD    +  N +++E+   S +RP+TL+E  GQ       K+   A KA  + L  ++F 
Sbjct: 1   MDLFDYMRENNMTKEEPLASRMRPKTLDEVMGQKHIIGKDKLLYRAIKA--DKLSSIIFY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDL-------AALLTNLEDRDVLFIDE 113
           GPPG GKTTLA+V+A     +FR  +  V A   D+         ++ ++  R +LF+DE
Sbjct: 59  GPPGTGKTTLAKVIANTTSASFRQINATV-AGKKDMEDVVNGAKDIMASMGQRTILFVDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++ L P +ED  + L+    E P     K  +SR       + V  L    +
Sbjct: 118 IHRFNKGQQDYLLPYVEDGTIILIGATTENPYFEVNKALISR-------SVVFELKPLEK 170

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
           +     I+   Y+        +RG       + D+AA  +A  S G  R A   +     
Sbjct: 171 EDILSIIKTAVYDT-------KRGMGNYNAVIDDDAAEFLADMSNGDARNALNAVELGIM 223

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
             +  +   I                   D         + R    G    +TISA +  
Sbjct: 224 TTDAGNDGIIHIT---------------LDVASQCIQKRVLRYDKDGDNHYDTISAFIKS 268

Query: 292 PRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
            R +  D    Y+ +  +    P+   R +   A + +G   P
Sbjct: 269 MRGSDPDAALYYLARMIYAGEDPKFIARRICICASEDVGNADP 311


>gi|319943868|ref|ZP_08018149.1| replication-associated recombination protein A [Lautropia mirabilis
           ATCC 51599]
 gi|319743101|gb|EFV95507.1| replication-associated recombination protein A [Lautropia mirabilis
           ATCC 51599]
          Length = 490

 Score =  178 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 77/327 (23%), Positives = 115/327 (35%), Gaps = 49/327 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
               LLRP TL+E  GQ       +    A ++       ++  GPPG+GKTTLA++ A 
Sbjct: 47  PLAELLRPATLDEVIGQKHLLGPERPLRLAFESGQ--PHSMILWGPPGVGKTTLARLTAN 104

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAME 130
             G  F + S  V +   D+ + +   E         +LFIDEIHR +   ++ L P  E
Sbjct: 105 AFGHEFIALSA-VFSGVKDIRSAMEQAERNLQAGRHTILFIDEIHRFNKAQQDALLPYAE 163

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
              + L+    E PS       LSR  +    +        L +R               
Sbjct: 164 SGLITLIGATTENPSFEVNSALLSRAQVYVLKSLDDEELKALVER--------------- 208

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
                R   L  L     A   +   + G  R    LL +    A  A    IT    + 
Sbjct: 209 ----ARARALPELEFEPAAIDTLVGYADGDARRMLNLLEQTATAARAAGVAQITPAFLEQ 264

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL   A                  R   GG    + ISA     R +  D    ++ +  
Sbjct: 265 ALSLNA-----------------RRFDKGGDSFYDQISALHKSVRGSNPDAALYWLCRML 307

Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIPH 333
                PR   R ++ +AW+ +G+  P 
Sbjct: 308 DGGADPRYLARRIVRMAWEDIGLADPR 334


>gi|330826232|ref|YP_004389535.1| AAA ATPase central domain-containing protein [Alicycliphilus
           denitrificans K601]
 gi|329311604|gb|AEB86019.1| AAA ATPase central domain protein [Alicycliphilus denitrificans
           K601]
          Length = 439

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 78/330 (23%), Positives = 121/330 (36%), Gaps = 54/330 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRPRTL E  GQ            A +  +      +  GPPG+GKTT+A+++A 
Sbjct: 11  PLAERLRPRTLGEVVGQQHVLGPGMPLRLAFE--SGRPHSCILWGPPGVGKTTIARLMAE 68

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE--------DRDVLFIDEIHRLSIIVEEILYPA 128
                F S S  V+    D+   +   E         R ++F+DE+HR +   ++   P 
Sbjct: 69  AFDAQFISISA-VLGGVKDIRDAVQLAESAAGGLMPQRTIVFVDEVHRFNKSQQDAFLPH 127

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           +E      +    E PS       LSR                          L     +
Sbjct: 128 VESGLFTFVGATTENPSFEVNSALLSR---------------------AAVYVLQPLTSD 166

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEI-AMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           DLK IV R   +  L   +  A E     + G  R     L  +   A  A  +TIT   
Sbjct: 167 DLKQIVVRAQDIQALPAIENEALERLIAYADGDARRLLNTLETLSVTAGQAKVETIT--- 223

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
            DA LL++  ++             + R   GG    +TISA     R +  D    +++
Sbjct: 224 -DAWLLQVLGER-------------MRRYDKGGEQFYDTISALHKSVRGSDPDAALYWLV 269

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +       PR   R ++ +AW+ +G+  P 
Sbjct: 270 RMLDGGADPRYMARRIVRMAWEDIGLADPR 299


>gi|221068782|ref|ZP_03544887.1| AAA ATPase central domain protein [Comamonas testosteroni KF-1]
 gi|220713805|gb|EED69173.1| AAA ATPase central domain protein [Comamonas testosteroni KF-1]
          Length = 446

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 78/341 (22%), Positives = 126/341 (36%), Gaps = 60/341 (17%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACS---NLKVFIEAAKARAEALDHVLFVGPPGL 65
           S +          LRPRTL E  GQ         L++  E+ +         +  GPPG+
Sbjct: 8   SSSAIPHQPLAERLRPRTLAEVIGQQHVLGEGMPLRLAFESGR-----PHSCILWGPPGV 62

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTN--------LEDRDVLFIDEIHRL 117
           GKTT+A+++A      F S S  V+    D+   +          L+ R ++F+DE+HR 
Sbjct: 63  GKTTIARLMADAFDAQFISISA-VLGGVKDIREAVEQAQAARSGLLQQRTIVFVDEVHRF 121

Query: 118 SIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
           +   ++   P +E      +    E PS       LSR                      
Sbjct: 122 NKSQQDAFLPHVESGLFTFIGATTENPSFEVNSALLSR---------------------A 160

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAV-TDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
               L     +DLK IV +   +  +    DEA   +   + G  R     L  +   AE
Sbjct: 161 AVYVLQSLTTDDLKQIVAKAQVIKAVPTIEDEALDRLIAYADGDARRLLNTLETLSITAE 220

Query: 235 VAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRD 294
            A  ++IT    D  LL++  ++             + R   GG    +TISA     R 
Sbjct: 221 QAGVESIT----DGWLLKVLGER-------------MRRYDKGGEQFYDTISALHKSVRG 263

Query: 295 AIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +  D    +  +       PR   R ++ +AW+ +G+  P 
Sbjct: 264 SDPDAALYWFCRMLDGGADPRYLARRIVRMAWEDIGLADPR 304


>gi|220935170|ref|YP_002514069.1| recombination factor protein RarA [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996480|gb|ACL73082.1| recombination factor protein RarA [Thioalkalivibrio sp. HL-EbGR7]
          Length = 447

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 79/342 (23%), Positives = 125/342 (36%), Gaps = 46/342 (13%)

Query: 5   EGLLSRNVSQE--DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           + L   +   E        +RPR L+E+ GQ    +  K    A +   + L  +LF GP
Sbjct: 3   DDLFDASPVNETGRPLADRMRPRNLDEYAGQSHLLAPGKPLRRAIEE--DRLHSMLFWGP 60

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIH 115
           PG GKTTLA+++A   G  F + S  V++   D+ A +    +         VLF+DE+H
Sbjct: 61  PGTGKTTLARMIAHYCGAQFLTLSA-VLSGVKDIRAAVEQAREYRRMHGKPTVLFVDEVH 119

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P +ED  +  +    E PS       LSR                + DR
Sbjct: 120 RFNKSQQDAFLPHVEDGTIAFVGATTENPSFELNNALLSRVRTYVLKALTDGDIRAIIDR 179

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                              +RG     L + DE    +A  + G  R A  LL    D A
Sbjct: 180 --------------ALADEERGLGGRHLHMADELRDRLARAADGDARRALNLLEIAADLA 225

Query: 234 EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
           +         EI +A L  +                 + R   GG +  + ISA     R
Sbjct: 226 Q---EGPQGAEITEATLDEVTS-------------QGLRRFDKGGELFYDQISALHKSVR 269

Query: 294 DAIEDLIEPYMIQQ--GFIQRTPRGRLLMPIAWQHLGIDIPH 333
            +  D    ++ +   G        R ++ +A + +G   P 
Sbjct: 270 GSNPDAALYWLCRMIDGGCDLVYLSRRIVRMASEDIGNADPR 311


>gi|226193735|ref|ZP_03789337.1| ATPase, AAA family [Burkholderia pseudomallei Pakistan 9]
 gi|254298872|ref|ZP_04966322.1| ATPase, AAA family [Burkholderia pseudomallei 406e]
 gi|157809189|gb|EDO86359.1| ATPase, AAA family [Burkholderia pseudomallei 406e]
 gi|225934040|gb|EEH30025.1| ATPase, AAA family [Burkholderia pseudomallei Pakistan 9]
          Length = 485

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 73/335 (21%), Positives = 122/335 (36%), Gaps = 54/335 (16%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           V         LRP+TL +  GQ       K    A +  +     ++  GPPG+GKTTLA
Sbjct: 56  VEPRRPLAEALRPKTLADVIGQTHLLGEGKPLRLAFE--SGKPHSMILWGPPGVGKTTLA 113

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEI 124
           ++ A      F + S  V+    D+   +              +LF+DEIHR +   ++ 
Sbjct: 114 RLTALAFDCEFIALSA-VLGGVKDIREAMEQARDTLNRTGRHTILFVDEIHRFNKAQQDA 172

Query: 125 LYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           L P +E   +  +    E PS       LSR  +    +                     
Sbjct: 173 LLPFVESGLVTFIGATTENPSFEVNSALLSRAQVYVLKSLA------------------- 213

Query: 183 YEIEDLKTIVQRGAK--LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
              ++L+ +++R     L GLA  D+A   +   + G  R    LL + +  A  A   T
Sbjct: 214 --EDELRQLLKRAQDVALGGLAFDDKAVDTLVGYADGDARRFLNLLEQAQTAASSAGVTT 271

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I     ++A+   A                  R   GG    + ISA     R +  D  
Sbjct: 272 IDAAFVESAMTMNA-----------------RRFDKGGDNFYDQISALHKSVRGSSPDGA 314

Query: 301 EPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
             ++ +       P+   R ++ +AW+ +G+  P 
Sbjct: 315 LYWLCRMLDGGADPKYLARRVVRMAWEDIGLADPR 349


>gi|291615033|ref|YP_003525190.1| ATPase AAA [Sideroxydans lithotrophicus ES-1]
 gi|291585145|gb|ADE12803.1| AAA ATPase central domain protein [Sideroxydans lithotrophicus
           ES-1]
          Length = 437

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 70/338 (20%), Positives = 121/338 (35%), Gaps = 51/338 (15%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L + N          LRP+ ++E  GQ       K    A   ++  L  ++  GPPG+G
Sbjct: 4   LFAPN-QPAAPLAERLRPKHIDEVIGQSHLLGEGKPLRLA--FQSGKLHSMILWGPPGVG 60

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSI 119
           KTTLA+++A      F   S  V++   D+   +   E          +LF+DE+HR + 
Sbjct: 61  KTTLARLMASAFDAEFVPLSA-VLSGVKDIREAIAQAEATLQQSGRHTILFVDEVHRFNK 119

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             ++   P +E   +  +    E PS       LSR  +    +        L +R    
Sbjct: 120 SQQDAFLPFVEQGLVTFIGATTENPSFELNNALLSRAQVYVLQSLSEAEMGQLFERAQQV 179

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                               L GL     A   +   + G  R    +L +++  A+ A 
Sbjct: 180 A-------------------LQGLEFDAAAKERVIGYADGDARRLLNVLEQLQTAAQAAK 220

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
              +  +  DA L +                  + R   GG    + ISA     R +  
Sbjct: 221 LDKVDAKFLDATLAQK-----------------MRRFDKGGEAFYDQISALHKSVRGSNP 263

Query: 298 DLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           D    ++++       PR   R ++ +AW+ +G+  P 
Sbjct: 264 DAALYWLVRMLDGGADPRYLARRIVRMAWEDIGLADPR 301


>gi|62184297|gb|AAX76510.1| RuvB [Allochromatium vinosum DSM 180]
          Length = 164

 Score =  176 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 75/144 (52%), Positives = 100/144 (69%)

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           DL  IVQR A + G+    + A EIA R+RGTPRIA RLLRRVRD+A+V     I+ EIA
Sbjct: 1   DLTHIVQRSAGILGIEAEPDGAAEIARRARGTPRIANRLLRRVRDYAQVRGDGRISAEIA 60

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           D AL  L +D +GFD +D R L+ +   F GGPVG+E+++A + E R  IED++EP++IQ
Sbjct: 61  DRALSMLKVDALGFDHMDRRLLSAVIEKFDGGPVGVESLAAAIGEERGTIEDVLEPFLIQ 120

Query: 307 QGFIQRTPRGRLLMPIAWQHLGID 330
           QGF+ RTPRGR+    A+QH G+ 
Sbjct: 121 QGFLMRTPRGRMATQSAYQHFGLS 144


>gi|126454407|ref|YP_001067279.1| recombination factor protein RarA [Burkholderia pseudomallei 1106a]
 gi|167720767|ref|ZP_02404003.1| recombination factor protein RarA [Burkholderia pseudomallei DM98]
 gi|167739751|ref|ZP_02412525.1| recombination factor protein RarA [Burkholderia pseudomallei 14]
 gi|167825381|ref|ZP_02456852.1| recombination factor protein RarA [Burkholderia pseudomallei 9]
 gi|167851463|ref|ZP_02476971.1| recombination factor protein RarA [Burkholderia pseudomallei B7210]
 gi|167895448|ref|ZP_02482850.1| recombination factor protein RarA [Burkholderia pseudomallei 7894]
 gi|167903834|ref|ZP_02491039.1| recombination factor protein RarA [Burkholderia pseudomallei NCTC
           13177]
 gi|167912100|ref|ZP_02499191.1| recombination factor protein RarA [Burkholderia pseudomallei 112]
 gi|167920074|ref|ZP_02507165.1| recombination factor protein RarA [Burkholderia pseudomallei
           BCC215]
 gi|217421197|ref|ZP_03452702.1| ATPase, AAA family [Burkholderia pseudomallei 576]
 gi|237813404|ref|YP_002897855.1| recombination factor protein RarA [Burkholderia pseudomallei
           MSHR346]
 gi|242315892|ref|ZP_04814908.1| replication-associated recombination protein A [Burkholderia
           pseudomallei 1106b]
 gi|126228049|gb|ABN91589.1| ATPase, AAA family [Burkholderia pseudomallei 1106a]
 gi|217396609|gb|EEC36626.1| ATPase, AAA family [Burkholderia pseudomallei 576]
 gi|237506600|gb|ACQ98918.1| recombination factor protein RarA [Burkholderia pseudomallei
           MSHR346]
 gi|242139131|gb|EES25533.1| replication-associated recombination protein A [Burkholderia
           pseudomallei 1106b]
          Length = 436

 Score =  176 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 73/335 (21%), Positives = 122/335 (36%), Gaps = 54/335 (16%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           V         LRP+TL +  GQ       K    A +  +     ++  GPPG+GKTTLA
Sbjct: 7   VEPRRPLAEALRPKTLADVIGQTHLLGEGKPLRLAFE--SGKPHSMILWGPPGVGKTTLA 64

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEI 124
           ++ A      F + S  V+    D+   +              +LF+DEIHR +   ++ 
Sbjct: 65  RLTALAFDCEFIALSA-VLGGVKDIREAMEQARDTLNRTGRHTILFVDEIHRFNKAQQDA 123

Query: 125 LYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           L P +E   +  +    E PS       LSR  +    +                     
Sbjct: 124 LLPFVESGLVTFIGATTENPSFEVNSALLSRAQVYVLKSLA------------------- 164

Query: 183 YEIEDLKTIVQRGAK--LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
              ++L+ +++R     L GLA  D+A   +   + G  R    LL + +  A  A   T
Sbjct: 165 --EDELRQLLKRAQDVALGGLAFDDKAVDTLVGYADGDARRFLNLLEQAQTAASSAGVTT 222

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I     ++A+   A                  R   GG    + ISA     R +  D  
Sbjct: 223 IDAAFVESAMTMNA-----------------RRFDKGGDNFYDQISALHKSVRGSSPDGA 265

Query: 301 EPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
             ++ +       P+   R ++ +AW+ +G+  P 
Sbjct: 266 LYWLCRMLDGGADPKYLARRVVRMAWEDIGLADPR 300


>gi|224826932|ref|ZP_03700031.1| AAA ATPase central domain protein [Lutiella nitroferrum 2002]
 gi|224600919|gb|EEG07103.1| AAA ATPase central domain protein [Lutiella nitroferrum 2002]
          Length = 439

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 74/331 (22%), Positives = 114/331 (34%), Gaps = 49/331 (14%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
            +      LRP +L+E  GQ       K    A +++      ++  GPPG+GKTTLA++
Sbjct: 9   PKKPLAEALRPTSLDEVIGQPHLIGPGKPLRLAVESK--TPHSMILWGPPGVGKTTLARI 66

Query: 74  VARELGVNFRSTSGPVIAKAGDLA-------ALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           +A      F   S  V +   D+        A+L       +LF+DE+HR +   ++   
Sbjct: 67  LAHSFDAEFIPLSA-VFSGVKDIREAVDRAQAVLQRDGRHTILFVDEVHRFNKSQQDAFL 125

Query: 127 PAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           P +E   L  +    E PS       LSR  +             L  R           
Sbjct: 126 PYVESGLLTFIGATTENPSFEVNSALLSRAQVYVLNALADDDFKALFARAVA-------- 177

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
                        L GL   D A   ++  + G  R    LL + R  A   H + I  +
Sbjct: 178 ----------SGALPGLTFDDSALATLSGYADGDARRFLNLLEQTRTAASARHVEHIDAD 227

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
                L   A                  R   GG    + ISA     R +  D    ++
Sbjct: 228 FLAEVLTVNA-----------------RRFDKGGDAFYDQISALHKSVRGSSPDGALYWL 270

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +       PR   R L+ +AW+ +G+  P 
Sbjct: 271 TRMLDGGADPRYLARRLVRMAWEDIGLADPR 301


>gi|94309639|ref|YP_582849.1| recombination factor protein RarA [Cupriavidus metallidurans CH34]
 gi|93353491|gb|ABF07580.1| recombination protein [Cupriavidus metallidurans CH34]
          Length = 445

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 70/328 (21%), Positives = 118/328 (35%), Gaps = 52/328 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRPR ++E  GQ       K    A ++       ++  GPPG+GKTTLA+++A 
Sbjct: 16  PLAERLRPRNIDEVIGQQHLLGPGKPLRVAFESGE--PHSMILWGPPGVGKTTLARLMAN 73

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130
                F + S  V++   D+   +   E       R ++F+DE+HR +   ++   P +E
Sbjct: 74  AFDAEFIALSA-VLSGVKDIREAVERAEQFRAHGRRTLVFVDEVHRFNKSQQDAFLPHVE 132

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
                 +    E PS       LSR  +    +                        ++L
Sbjct: 133 SGLFTFIGATTENPSFEVNGALLSRAAVYVLKS---------------------LNEDEL 171

Query: 189 KTIVQRGAKLT-GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           K +V R ++   G+   DEA   I   + G  R     +  V   A  A    +   +  
Sbjct: 172 KQLVLRASEELGGIRWDDEAMGLIVASADGDGRKLLNNIEIVARAARNAGVDAVDTALLG 231

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           +AL                    + R   GG    + ISA     R +  D    +  + 
Sbjct: 232 SALSEN-----------------LRRFDKGGDAFYDQISALHKSVRGSDPDGALYWFCRM 274

Query: 308 GFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                 PR   R ++ +AW+ +G+  P 
Sbjct: 275 LDGGADPRYLARRIVRMAWEDIGLADPR 302


>gi|241663732|ref|YP_002982092.1| recombination factor protein RarA [Ralstonia pickettii 12D]
 gi|240865759|gb|ACS63420.1| AAA ATPase central domain protein [Ralstonia pickettii 12D]
          Length = 449

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 74/343 (21%), Positives = 122/343 (35%), Gaps = 48/343 (13%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M+    L  +          LRP + ++  GQ       K     A A  E    ++  G
Sbjct: 1   MNASASLFPDAPAHMPLAERLRPHSADDVIGQQHLLGPGKPL-RVAFASGEP-HSMILWG 58

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIH 115
           PPG+GKTTLA+++A      F + S  V++   D+   +   E       R ++F+DE+H
Sbjct: 59  PPGVGKTTLARLMANAFDAEFIALSA-VLSGVKDIREAVERAEQFRANGRRTLVFVDEVH 117

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P +E      +    E PS       LSR  +    +            
Sbjct: 118 RFNKSQQDAFLPHVESGLFTFIGATTENPSFEVNGALLSRAAVYVLKS------------ 165

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLT-GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
                       ++LK + +R  +   GL  T  A   I   + G  R     +  V   
Sbjct: 166 ---------LSDDELKQLAERARQELGGLEWTPAALDAIVASADGDGRKLLNNVEIVTRA 216

Query: 233 AEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEP 292
           A        T  + D ALL  A+ +             + R   GG    + ISA     
Sbjct: 217 ARSQAEG-DTVPVIDEALLASALSEN------------LRRFDKGGDAFYDQISALHKSV 263

Query: 293 RDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           R +  D    +  +       PR   R ++ +AW+ +G+  P 
Sbjct: 264 RGSDPDGALYWFCRMLDGGADPRYLARRIVRMAWEDIGLADPR 306


>gi|53720212|ref|YP_109198.1| recombination factor protein RarA [Burkholderia pseudomallei
           K96243]
 gi|53725979|ref|YP_103691.1| recombination factor protein RarA [Burkholderia mallei ATCC 23344]
 gi|52210626|emb|CAH36610.1| putative ATPase protein [Burkholderia pseudomallei K96243]
 gi|52429402|gb|AAU49995.1| ATPase, AAA family protein [Burkholderia mallei ATCC 23344]
          Length = 455

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 73/335 (21%), Positives = 122/335 (36%), Gaps = 54/335 (16%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           V         LRP+TL +  GQ       K    A +  +     ++  GPPG+GKTTLA
Sbjct: 26  VEPRRPLAEALRPKTLADVIGQTHLLGEGKPLRLAFE--SGKPHSMILWGPPGVGKTTLA 83

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEI 124
           ++ A      F + S  V+    D+   +              +LF+DEIHR +   ++ 
Sbjct: 84  RLTALAFDCEFIALSA-VLGGVKDIREAMEQARDTLNRTGRHTILFVDEIHRFNKAQQDA 142

Query: 125 LYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           L P +E   +  +    E PS       LSR  +    +                     
Sbjct: 143 LLPFVESGLVTFIGATTENPSFEVNSALLSRAQVYVLKSLA------------------- 183

Query: 183 YEIEDLKTIVQRGAK--LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
              ++L+ +++R     L GLA  D+A   +   + G  R    LL + +  A  A   T
Sbjct: 184 --EDELRQLLKRAQDVALGGLAFDDKAVDTLVGYADGDARRFLNLLEQAQTAASSAGVTT 241

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I     ++A+   A                  R   GG    + ISA     R +  D  
Sbjct: 242 IDAAFVESAMTMNA-----------------RRFDKGGDNFYDQISALHKSVRGSSPDGA 284

Query: 301 EPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
             ++ +       P+   R ++ +AW+ +G+  P 
Sbjct: 285 LYWLCRMLDGGADPKYLARRVVRMAWEDIGLADPR 319


>gi|83720479|ref|YP_442107.1| recombination factor protein RarA [Burkholderia thailandensis E264]
 gi|167619051|ref|ZP_02387682.1| recombination factor protein RarA [Burkholderia thailandensis Bt4]
 gi|257138292|ref|ZP_05586554.1| recombination factor protein RarA [Burkholderia thailandensis E264]
 gi|83654304|gb|ABC38367.1| ATPase, AAA family protein [Burkholderia thailandensis E264]
          Length = 436

 Score =  175 bits (444), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 73/335 (21%), Positives = 122/335 (36%), Gaps = 54/335 (16%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           V         LRP+TL +  GQ       K    A +  +     ++  GPPG+GKTTLA
Sbjct: 7   VEPRRPLAEALRPKTLADVIGQTHLLGEGKPLKLAFE--SGKPHSMILWGPPGVGKTTLA 64

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEI 124
           ++ A      F + S  V+    D+   +              +LF+DEIHR +   ++ 
Sbjct: 65  RLTALAFDCEFIALSA-VLGGVKDIREAMEQARDTLNRTGRHTILFVDEIHRFNKAQQDA 123

Query: 125 LYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           L P +E   +  +    E PS       LSR  +    +                     
Sbjct: 124 LLPFVESGLVTFIGATTENPSFEVNSALLSRAQVYVLKS--------------------- 162

Query: 183 YEIEDLKTIVQRGAK--LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
              ++L+ +++R     L GLA  D+A   +   + G  R    LL + +  A  A   T
Sbjct: 163 LTEDELRQLLKRAQDTALDGLAFDDKAVDTLVGYADGDARRFLNLLEQAQTAASSAGVTT 222

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I     ++A+   A                  R   GG    + ISA     R +  D  
Sbjct: 223 IDAAFVESAMTMNA-----------------RRFDKGGDNFYDQISALHKSVRGSSPDGA 265

Query: 301 EPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
             ++ +       P+   R ++ +AW+ +G+  P 
Sbjct: 266 LYWLCRMLDGGADPKYLARRVVRMAWEDIGLADPR 300


>gi|67643955|ref|ZP_00442698.1| ATPase, AAA family protein [Burkholderia mallei GB8 horse 4]
 gi|76809377|ref|YP_334448.1| recombination factor protein RarA [Burkholderia pseudomallei 1710b]
 gi|121599128|ref|YP_992137.1| recombination factor protein RarA [Burkholderia mallei SAVP1]
 gi|124386623|ref|YP_001028581.1| recombination factor protein RarA [Burkholderia mallei NCTC 10229]
 gi|126448329|ref|YP_001081520.1| recombination factor protein RarA [Burkholderia mallei NCTC 10247]
 gi|134280424|ref|ZP_01767135.1| ATPase, AAA family [Burkholderia pseudomallei 305]
 gi|166998317|ref|ZP_02264177.1| ATPase, AAA family protein [Burkholderia mallei PRL-20]
 gi|167816971|ref|ZP_02448651.1| recombination factor protein RarA [Burkholderia pseudomallei 91]
 gi|254175353|ref|ZP_04882013.1| ATPase, AAA family protein [Burkholderia mallei ATCC 10399]
 gi|254191852|ref|ZP_04898355.1| ATPase, AAA family [Burkholderia pseudomallei Pasteur 52237]
 gi|254196125|ref|ZP_04902550.1| ATPase, AAA family [Burkholderia pseudomallei S13]
 gi|254202387|ref|ZP_04908750.1| ATPase, AAA family protein [Burkholderia mallei FMH]
 gi|254207719|ref|ZP_04914069.1| ATPase, AAA family protein [Burkholderia mallei JHU]
 gi|254261086|ref|ZP_04952140.1| replication-associated recombination protein A [Burkholderia
           pseudomallei 1710a]
 gi|254356381|ref|ZP_04972657.1| ATPase, AAA family protein [Burkholderia mallei 2002721280]
 gi|76578830|gb|ABA48305.1| ATPase, AAA family protein [Burkholderia pseudomallei 1710b]
 gi|121227938|gb|ABM50456.1| ATPase, AAA family protein [Burkholderia mallei SAVP1]
 gi|124294643|gb|ABN03912.1| ATPase, AAA family [Burkholderia mallei NCTC 10229]
 gi|126241199|gb|ABO04292.1| ATPase, AAA family protein [Burkholderia mallei NCTC 10247]
 gi|134248431|gb|EBA48514.1| ATPase, AAA family [Burkholderia pseudomallei 305]
 gi|147746634|gb|EDK53711.1| ATPase, AAA family protein [Burkholderia mallei FMH]
 gi|147751613|gb|EDK58680.1| ATPase, AAA family protein [Burkholderia mallei JHU]
 gi|148025378|gb|EDK83532.1| ATPase, AAA family protein [Burkholderia mallei 2002721280]
 gi|157939523|gb|EDO95193.1| ATPase, AAA family [Burkholderia pseudomallei Pasteur 52237]
 gi|160696397|gb|EDP86367.1| ATPase, AAA family protein [Burkholderia mallei ATCC 10399]
 gi|169652869|gb|EDS85562.1| ATPase, AAA family [Burkholderia pseudomallei S13]
 gi|238525428|gb|EEP88856.1| ATPase, AAA family protein [Burkholderia mallei GB8 horse 4]
 gi|243065389|gb|EES47575.1| ATPase, AAA family protein [Burkholderia mallei PRL-20]
 gi|254219775|gb|EET09159.1| replication-associated recombination protein A [Burkholderia
           pseudomallei 1710a]
          Length = 436

 Score =  175 bits (444), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 73/335 (21%), Positives = 122/335 (36%), Gaps = 54/335 (16%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           V         LRP+TL +  GQ       K    A +  +     ++  GPPG+GKTTLA
Sbjct: 7   VEPRRPLAEALRPKTLADVIGQTHLLGEGKPLRLAFE--SGKPHSMILWGPPGVGKTTLA 64

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEI 124
           ++ A      F + S  V+    D+   +              +LF+DEIHR +   ++ 
Sbjct: 65  RLTALAFDCEFIALSA-VLGGVKDIREAMEQARDTLNRTGRHTILFVDEIHRFNKAQQDA 123

Query: 125 LYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           L P +E   +  +    E PS       LSR  +    +                     
Sbjct: 124 LLPFVESGLVTFIGATTENPSFEVNSALLSRAQVYVLKSLA------------------- 164

Query: 183 YEIEDLKTIVQRGAK--LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
              ++L+ +++R     L GLA  D+A   +   + G  R    LL + +  A  A   T
Sbjct: 165 --EDELRQLLKRAQDVALGGLAFDDKAVDTLVGYADGDARRFLNLLEQAQTAASSAGVTT 222

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I     ++A+   A                  R   GG    + ISA     R +  D  
Sbjct: 223 IDAAFVESAMTMNA-----------------RRFDKGGDNFYDQISALHKSVRGSSPDGA 265

Query: 301 EPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
             ++ +       P+   R ++ +AW+ +G+  P 
Sbjct: 266 LYWLCRMLDGGADPKYLARRVVRMAWEDIGLADPR 300


>gi|254181008|ref|ZP_04887606.1| ATPase, AAA family [Burkholderia pseudomallei 1655]
 gi|184211547|gb|EDU08590.1| ATPase, AAA family [Burkholderia pseudomallei 1655]
          Length = 436

 Score =  175 bits (444), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 73/335 (21%), Positives = 122/335 (36%), Gaps = 54/335 (16%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           V         LRP+TL +  GQ       K    A +  +     ++  GPPG+GKTTLA
Sbjct: 7   VEPRRPLAEALRPKTLADVIGQTHLLGEGKPLRLAFE--SGKPHSMILWGPPGVGKTTLA 64

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEI 124
           ++ A      F + S  V+    D+   +              +LF+DEIHR +   ++ 
Sbjct: 65  RLTALAFDCEFIALSA-VLGGVKDIREAMEQARDTLNRTGRHTILFVDEIHRFNKAQQDA 123

Query: 125 LYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           L P +E   +  +    E PS       LSR  +    +                     
Sbjct: 124 LLPFVESGLVTFIGATTENPSFEVNSALLSRAQVYVLKSLA------------------- 164

Query: 183 YEIEDLKTIVQRGAK--LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
              ++L+ +++R     L GLA  D+A   +   + G  R    LL + +  A  A   T
Sbjct: 165 --EDELRQLLKRAQDVALGGLAFDDKAVDTLVGYADGDARRFLNLLEQAQTAASSAGVTT 222

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I     ++A+   A                  R   GG    + ISA     R +  D  
Sbjct: 223 IDAAFVESAMTMNA-----------------RRFDKGGDNFYDQISALHKSVRGSSPDGA 265

Query: 301 EPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
             ++ +       P+   R ++ +AW+ +G+  P 
Sbjct: 266 LYWLCRMLDGGADPKYLARRVVRMAWEDIGLADPR 300


>gi|332967839|gb|EGK06938.1| replication-associated recombination protein A [Kingella kingae
           ATCC 23330]
          Length = 435

 Score =  175 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 72/327 (22%), Positives = 118/327 (36%), Gaps = 48/327 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRPRTL+E  GQ       K     A A  E    +L  G PG+GKTTLA++VA+
Sbjct: 12  PLAERLRPRTLDEVIGQEHLTGEGKPL-RVALASGEP-HSMLLWGSPGIGKTTLARIVAQ 69

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAME 130
             G  F   S  V +   D+   +   E       R +LF+DE+HR +   ++   P +E
Sbjct: 70  GFGAQFLPLSA-VFSGVKDIREAIQKAEIAWQHGQRTILFVDEVHRFNKSQQDAFLPYVE 128

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +  +  +    E PS       LSR  +    +      + L D+              +
Sbjct: 129 NGLITFIGATTENPSFEVNPALLSRAQVYVLKSLDKSSLHLLLDK--------------V 174

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           + + +  A        D+A   +   + G  R       ++   A +    TIT +    
Sbjct: 175 RALPEFSA----FHWDDDAPSLLIESADGDARRFLNNAEQIGRAATMRQQNTITAQFIAQ 230

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L                    + R   GG      ISA     R +  +    ++ +  
Sbjct: 231 TLGEQ-----------------VRRFDKGGEQFYNQISALHKSVRGSHPNAALYWLCRML 273

Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIPH 333
                PR   R ++ +AW+ +G+  P 
Sbjct: 274 DGGADPRYLSRRIVRMAWEDIGLADPR 300


>gi|167586457|ref|ZP_02378845.1| recombination factor protein RarA [Burkholderia ubonensis Bu]
          Length = 436

 Score =  175 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 73/336 (21%), Positives = 124/336 (36%), Gaps = 54/336 (16%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
            V         LRP+TL E  GQ       K    A +  +     ++  GPPG+GKTTL
Sbjct: 6   QVEPRRPLAEALRPKTLAEVIGQTHLLGEGKPLRLAFE--SGKPHSMILWGPPGVGKTTL 63

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEE 123
           A++ A      F + S  V+    D+   +   +D         +LF+DEIHR +   ++
Sbjct: 64  ARLTALAFDCEFIALSA-VLGGVKDIREAMEQAKDTLNRTGRHTILFVDEIHRFNKGQQD 122

Query: 124 ILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
            L P +E   +  +    E PS       LSR  +    +                    
Sbjct: 123 ALLPFVESGLVTFIGATTENPSFEVNSALLSRAQVYVLKS-------------------- 162

Query: 182 FYEIEDLKTIVQRGAKL--TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
               ++++ +++R  ++   GLA  D+A   +   + G  R    LL + +  A  A   
Sbjct: 163 -LTDDEMRQLLKRAQEIALEGLAFDDKAVDTLVGYADGDARRFLNLLEQAQTAATSAGVT 221

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           TI  +   +A+   A                  R   GG    + ISA     R +  D 
Sbjct: 222 TIDADFVSSAMTLNA-----------------RRFDKGGDNFYDQISALHKSVRGSSPDG 264

Query: 300 IEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
              +  +       P+   R ++ +AW+ +G+  P 
Sbjct: 265 ALYWFCRMIDGGADPKYLARRIVRMAWEDIGLADPR 300


>gi|254496577|ref|ZP_05109445.1| recombination factor protein RarA [Legionella drancourtii LLAP12]
 gi|254354201|gb|EET12868.1| recombination factor protein RarA [Legionella drancourtii LLAP12]
          Length = 432

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 68/329 (20%), Positives = 123/329 (37%), Gaps = 53/329 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
               LLRP+ +++  GQ     + K    +   R   L  ++  GPPG+GKTT+A + A 
Sbjct: 11  PLAELLRPKHIDDVIGQSHLLGDGKPLRLSFLGR--KLHSMILWGPPGVGKTTIAHITAA 68

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAME 130
                + + S  V +   D+ A +   ++        +LFIDEIHR +   ++ L P  E
Sbjct: 69  AFECEWIALSA-VFSGVKDIRAAMERAQENLAQGKHTILFIDEIHRFNKAQQDALLPYTE 127

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
              +  +    E PS       LSR  +         +  PL               E+L
Sbjct: 128 SGLVTFIGATTENPSFEVNSALLSRAQV--------YVLKPL-------------TNEEL 166

Query: 189 KTIVQRG--AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           K + Q+   A L+ ++  D A   +   + G  R     + +++      +   + +E  
Sbjct: 167 KQLFQKAHQAVLSHISFDDAAVAIVIDYADGDARRLLNCVEQLQTACTAMNINQVDKEFV 226

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
             +L +                    R   GG    + ISA     R +  D    ++ +
Sbjct: 227 INSLAQNT-----------------RRFDKGGENFYDQISALHKSVRGSDPDAALYWLCR 269

Query: 307 Q--GFIQRTPRGRLLMPIAWQHLGIDIPH 333
              G +      R ++ +AW+ +G+  P 
Sbjct: 270 MLDGGVDPHYLARRIVRMAWEDIGLADPR 298


>gi|167580959|ref|ZP_02373833.1| recombination factor protein RarA [Burkholderia thailandensis
           TXDOH]
          Length = 436

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 73/335 (21%), Positives = 122/335 (36%), Gaps = 54/335 (16%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           V         LRP+TL +  GQ       K    A +  +     ++  GPPG+GKTTLA
Sbjct: 7   VEPRRPLAEALRPKTLADVIGQTHLLGEGKPLKLAFE--SGKPHSMILWGPPGVGKTTLA 64

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEI 124
           ++ A      F + S  V+    D+   +              +LF+DEIHR +   ++ 
Sbjct: 65  RLTALAFDCEFIALSA-VLGGVKDIREAMEQARDTLNRTGRHTILFVDEIHRFNKAQQDA 123

Query: 125 LYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           L P +E   +  +    E PS       LSR  +    +                     
Sbjct: 124 LLPFVESGLVTFIGATTENPSFEVNSALLSRAQVYVLKS--------------------- 162

Query: 183 YEIEDLKTIVQRGAK--LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
              ++L+ +++R     L GLA  D+A   +   + G  R    LL + +  A  A   T
Sbjct: 163 LTEDELRQLLKRAQDTALDGLAFDDKAVDTLVGYADGDARRFLNLLEQAQTAASSAGVTT 222

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I     ++A+   A                  R   GG    + ISA     R +  D  
Sbjct: 223 IDAAFVESAMTMNA-----------------RRFDKGGDNFYDQISALHKSVRGSSPDGA 265

Query: 301 EPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
             ++ +       P+   R ++ +AW+ +G+  P 
Sbjct: 266 LYWLCRMLDGGADPKYLARRVVRMAWEDIGLADPR 300


>gi|126439052|ref|YP_001060001.1| recombination factor protein RarA [Burkholderia pseudomallei 668]
 gi|126218545|gb|ABN82051.1| replication-associated recombination protein A [Burkholderia
           pseudomallei 668]
          Length = 436

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 73/335 (21%), Positives = 122/335 (36%), Gaps = 54/335 (16%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           V         LRP+TL +  GQ       K    A +  +     ++  GPPG+GKTTLA
Sbjct: 7   VEPRRPLAEALRPKTLADVIGQTHLLGEGKPLRLAFE--SGKPHSMILWGPPGVGKTTLA 64

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEI 124
           ++ A      F + S  V+    D+   +              +LF+DEIHR +   ++ 
Sbjct: 65  RLTALAFDCEFIALSA-VLGGVKDIREAMEQARDTLNRTGRHTILFVDEIHRFNKAQQDA 123

Query: 125 LYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           L P +E   +  +    E PS       LSR  +    +                     
Sbjct: 124 LLPFVESGLVTFIGATTENPSFEVNSALLSRAQVYVLKSLA------------------- 164

Query: 183 YEIEDLKTIVQRGAK--LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
              ++L+ +++R     L GLA  D+A   +   + G  R    LL + +  A  A   T
Sbjct: 165 --EDELRQLLKRAQDVALGGLAFDDKAVDTLVGYADGDARRFLNLLEQAQTAASSAGVTT 222

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I     ++A+   A                  R   GG    + ISA     R +  D  
Sbjct: 223 IDAAFVESAMTMNA-----------------RRFDKGGDNFYDQISALHKSVRGSSPDGA 265

Query: 301 EPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
             ++ +       P+   R ++ +AW+ +G+  P 
Sbjct: 266 LYWLCRMLDGGADPKYLARRVVRMAWEDIGLADPR 300


>gi|330815819|ref|YP_004359524.1| AAA ATPase, central region [Burkholderia gladioli BSR3]
 gi|327368212|gb|AEA59568.1| AAA ATPase, central region [Burkholderia gladioli BSR3]
          Length = 436

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 72/334 (21%), Positives = 115/334 (34%), Gaps = 50/334 (14%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
            +         LRP+TL+E  GQ       K    A +  +     ++  GPPG+GKTTL
Sbjct: 6   EIEPRRPLAEALRPKTLDEVIGQTHLLGEGKPLRLAFE--SGRPHSMILWGPPGVGKTTL 63

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEE 123
           A++ A      F + S  V+    D+   +   +D         +LF+DEIHR +   ++
Sbjct: 64  ARLTANAFDCEFIALSA-VLGGVKDIREAMEQAKDTLHRNGRHTILFVDEIHRFNKGQQD 122

Query: 124 ILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
            L P +E   +  +    E PS       LSR  +    +        L  R        
Sbjct: 123 ALLPFVESGLVTFIGATTENPSFEVNSALLSRAQVYVLKSLDDAEMRQLLARAQQIA--- 179

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
                           L GL   D+A   +   + G  R    LL + +  A  A    I
Sbjct: 180 ----------------LDGLTFEDKAVDTLIGYADGDARRFLNLLEQAQTAALSARTNRI 223

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
             +    A+   A                  R   GG    + ISA     R +  D   
Sbjct: 224 DADFVSNAMTLNA-----------------RRFDKGGDNFYDQISALHKSVRGSNPDAAL 266

Query: 302 PYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +  +       P+   R ++ +AW+ +G+  P 
Sbjct: 267 YWFCRMLDGGADPKYLSRRIVRMAWEDIGLADPR 300


>gi|34496831|ref|NP_901046.1| recombination factor protein RarA [Chromobacterium violaceum ATCC
           12472]
 gi|34102686|gb|AAQ59051.1| probable ATPase associated with chromosome architecture
           [Chromobacterium violaceum ATCC 12472]
          Length = 443

 Score =  174 bits (441), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 71/335 (21%), Positives = 113/335 (33%), Gaps = 51/335 (15%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           +V  +      LRP+ L++  GQ       K    +    +     ++  GPPG+GKTTL
Sbjct: 6   SVEPQKPLAEALRPQALDQVIGQQHLIGPGKPL--SLAVASGKPHSMILWGPPGVGKTTL 63

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLA-------ALLTNLEDRDVLFIDEIHRLSIIVEE 123
           A+++A      F   S  V A   D+        A+L     R +LF+DE+HR +   ++
Sbjct: 64  ARILAASFDAEFIPISA-VFAGVKDIREAVEKAHAVLQRSGRRTILFVDEVHRFNKSQQD 122

Query: 124 ILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
              P +E   +  +    E PS       LSR  +    +        L  R        
Sbjct: 123 AFLPFVESGLITFIGATTENPSFEVNSALLSRAQVYVLNSLSEDELKQLFAR-------- 174

Query: 182 FYEIEDLKTIVQRGAKLTG-LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
                       R       L   D A   +   + G  R    LL + R  A+      
Sbjct: 175 -----------ARTEGALDGLNFDDAAVSTLTGYADGDARRFLNLLEQTRTAAQARGVAD 223

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I     +  L   A                  R   GG    + ISA     R +  D  
Sbjct: 224 IDPGFLEEVLTLNA-----------------RRFDKGGDAFYDQISALHKSVRGSNPDAA 266

Query: 301 EPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
             ++ +       PR   R ++ +AW+ +G+  P 
Sbjct: 267 LYWLSRMLDGGADPRYLARRIVRMAWEDIGLADPR 301


>gi|226941287|ref|YP_002796361.1| recombination factor protein RarA [Laribacter hongkongensis HLHK9]
 gi|226716214|gb|ACO75352.1| recombination factor protein RarA [Laribacter hongkongensis HLHK9]
          Length = 442

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 73/327 (22%), Positives = 116/327 (35%), Gaps = 48/327 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP TL++  GQ       K    A ++R      ++  GPPG+GKTTLA+++A 
Sbjct: 14  PLAETLRPTTLDDVVGQQHLIGTGKPLRLAIESR--TPHSMILWGPPGVGKTTLARILAH 71

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAME 130
                F   S  V +   D+   +   +         +LF+DE+HR +   ++   P +E
Sbjct: 72  AFDAEFTPLSA-VFSGVKDIREAVERAQMAAARGRHTILFVDEVHRFNKSQQDAFLPFVE 130

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
                 +    E PS       LSR  +         +  PL D           ++E L
Sbjct: 131 AGLFTFIGATTENPSFEVNAALLSRAQV--------YVLKPLTDA----------DLEAL 172

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
               Q    L GL +   A   +A  + G  R    LL + R  A     + +     + 
Sbjct: 173 FVRAQAAGVLEGLELDAAARAVLAGYADGDARRFLNLLEQTRTAARAQQVQHVDTAFLEN 232

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L   A                  R   GG    + ISA     R +  D    ++ +  
Sbjct: 233 VLTLNA-----------------RRFDKGGDAFYDQISALHKSVRGSHPDAALYWLTRML 275

Query: 309 FIQRTP--RGRLLMPIAWQHLGIDIPH 333
                P    R L+ +AW+ +G+  P 
Sbjct: 276 DGGADPHYLARRLVRMAWEDIGLADPR 302


>gi|167563730|ref|ZP_02356646.1| recombination factor protein RarA [Burkholderia oklahomensis EO147]
          Length = 436

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 73/335 (21%), Positives = 120/335 (35%), Gaps = 54/335 (16%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           V         LRP+TL +  GQ       K    A +  +     ++  GPPG+GKTTLA
Sbjct: 7   VEPRRPLAEALRPKTLADVIGQTHLLGEGKPLRLAFE--SGKPHSMILWGPPGVGKTTLA 64

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEI 124
           ++ A      F + S  V+    D+   +              +LF+DEIHR +   ++ 
Sbjct: 65  RLTALAFDCEFIALSA-VLGGVKDIREAMDQARDTLNRTGRHTILFVDEIHRFNKAQQDA 123

Query: 125 LYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           L P +E   +  +    E PS       LSR  +    +                     
Sbjct: 124 LLPFVESGLVTFIGATTENPSFEVNSALLSRAQVYLLKS--------------------- 162

Query: 183 YEIEDLKTIVQRGAK--LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
              ++L+ ++ R     L GLA  D+A   +   + G  R    LL + +  A  A   T
Sbjct: 163 LTEDELRQLLARAQDTALAGLAFDDKAVDTLVGYADGDARRFLNLLEQAQTAATSAGVTT 222

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I     ++A+   A                  R   GG    + ISA     R +  D  
Sbjct: 223 IDAAFVESAMTMNA-----------------RRFDKGGDNFYDQISALHKSVRGSNPDGA 265

Query: 301 EPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
             +  +       P+   R ++ +AW+ +G+  P 
Sbjct: 266 LYWFCRMLDGGADPKYLARRVVRMAWEDIGLADPR 300


>gi|261380370|ref|ZP_05984943.1| replication-associated recombination protein A [Neisseria subflava
           NJ9703]
 gi|284796894|gb|EFC52241.1| replication-associated recombination protein A [Neisseria subflava
           NJ9703]
          Length = 435

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 70/331 (21%), Positives = 112/331 (33%), Gaps = 48/331 (14%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
             E      LRP +L++  GQ       K    A +        +L  GPPG+GKTTLA+
Sbjct: 8   QPEAPLAERLRPHSLDDVIGQQHLIGEGKPLRVAVE--GGKPHSMLLWGPPGVGKTTLAR 65

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILY 126
           ++A+     F   S  V +   D+   +   E         +LF+DE+HR +   ++   
Sbjct: 66  ILAQSFNAQFLPVSA-VFSGVKDIREAIEKAEIALQQGRATILFVDEVHRFNKAQQDAFL 124

Query: 127 PAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           P +E   L  +    E PS       LSR  +    +        L  +         + 
Sbjct: 125 PYVESGLLTFIGATTENPSFEVNPALLSRAQVYVLQSLSSDDLKKLITKVLALPEYQDFT 184

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           IE         A+   +   D  A           R    L+ ++   A     KT+T E
Sbjct: 185 IEA-------DAQELLVNTADGDA-----------RRLLNLIEQLLRAANTRRLKTLTAE 226

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
               +L                    I R   GG      ISA     R +  +    + 
Sbjct: 227 FLADSLGAQ-----------------IRRFDKGGESFYNQISALHKSVRGSHPNAALYWF 269

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +       PR   R ++ +AW+ +G+  P 
Sbjct: 270 CRMLDGGTDPRYLARRIVRMAWEDIGLADPR 300


>gi|20808203|ref|NP_623374.1| recombination factor protein RarA [Thermoanaerobacter tengcongensis
           MB4]
 gi|254479310|ref|ZP_05092650.1| ATPase, AAA family protein [Carboxydibrachium pacificum DSM 12653]
 gi|20516797|gb|AAM24978.1| uncharacterized ATPase related to the helicase subunit of the
           Holliday junction resolvase [Thermoanaerobacter
           tengcongensis MB4]
 gi|214034758|gb|EEB75492.1| ATPase, AAA family protein [Carboxydibrachium pacificum DSM 12653]
          Length = 440

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 81/346 (23%), Positives = 136/346 (39%), Gaps = 49/346 (14%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M  +  +      +       +RPRTL+EF GQ       K   E  +   +++  ++  
Sbjct: 1   MYKQTSIFDAKFDKNRPLADRMRPRTLDEFVGQEHILGKGKALRELIEK--DSITSMILW 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEI 114
           GPPG+GKTTLA ++A      F + S  V++   ++  ++   E       R V+FIDEI
Sbjct: 59  GPPGVGKTTLAMIIANMTNSKFVNFSA-VLSGIKEIKEIMAQAERDAMYGQRTVVFIDEI 117

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++   P +E   + L+    E PS       LSR  +         +  PL  
Sbjct: 118 HRFNKAQQDAFLPHVEKGNIILIGATTENPSFEVNSALLSRSKV--------FMMKPLDV 169

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           +  + I     + E      +RG  L  + + +E   +IA+ S G  R+A   L      
Sbjct: 170 KDIMIILKRALKDE------ERGLGLYNVEIDEEKLEKIALFSNGDARVALNTLEMAVMA 223

Query: 233 AE-VAHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGL 289
           A  V   + +T EI    + + A   DK G +  +L                   ISA  
Sbjct: 224 ANVVNGKRVVTDEILSDVMQKKALLYDKAGEEHYNL-------------------ISAFH 264

Query: 290 SEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
              R++  D    +M +       P    R ++  A + +G+  P 
Sbjct: 265 KSLRNSDWDAALYWMARMLEAGEDPLYIARRMIRFASEDVGLADPQ 310


>gi|325107722|ref|YP_004268790.1| Holliday junction DNA helicase RuvB domain protein [Planctomyces
           brasiliensis DSM 5305]
 gi|324967990|gb|ADY58768.1| Holliday junction DNA helicase RuvB domain protein [Planctomyces
           brasiliensis DSM 5305]
          Length = 318

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 86/311 (27%), Positives = 149/311 (47%), Gaps = 9/311 (2%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           D+  ++P +L    G       ++V ++A           L  GPPG GK++LA V+A+E
Sbjct: 8   DVQDIKPTSLRHLIGNDHVRQQVQVALDACFEDQVRFPDTLLTGPPGQGKSSLANVIAQE 67

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           L      T G  ++   +L ALL   +D +++ IDE+H L    +  L+  ++  +L + 
Sbjct: 68  LATTLHETLGQSVSGPAELNALLLGAKDGELIHIDEVHELPTEQQTALFICLDQRKLLVT 127

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
             +G     + I L++F+L+ +TT    +  PL+DR  + + L +    +L  +V++ ++
Sbjct: 128 NQKGA----LSIPLAKFSLLLSTTDPHKVLQPLRDRMRMVLELAYLTEAELADVVRQRSR 183

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257
                + D    EIA+R RGTPRIA R+L+  R  +       +T      A     ID 
Sbjct: 184 ALNWNIADGVPDEIAVRGRGTPRIALRILQSARRVSRSEGEHEVTFAHLRRACELDRIDG 243

Query: 258 MGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGR 317
            G    + RYL ++      GP  +  +++ L  P   + D+IEP+MI+ G + +   GR
Sbjct: 244 KGLSSQEQRYLELLGE----GPTRLNVLASCLGVPSKTVSDVIEPFMIRTGLVVKDNGGR 299

Query: 318 L-LMPIAWQHL 327
             L      HL
Sbjct: 300 RTLTKAGMDHL 310


>gi|170722571|ref|YP_001750259.1| recombination factor protein RarA [Pseudomonas putida W619]
 gi|169760574|gb|ACA73890.1| AAA ATPase central domain protein [Pseudomonas putida W619]
          Length = 441

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 81/343 (23%), Positives = 127/343 (37%), Gaps = 52/343 (15%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD     S  V+Q     + LRP +L+E+ GQ    +  K   EA +    AL  ++F G
Sbjct: 1   MDLFR--SEPVAQ--PLAARLRPSSLDEYVGQEHLLARGKPLREALEQ--GALHSMIFWG 54

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLT-------NLEDRDVLFIDEI 114
           PPG+GKTTLA+++A+    +F + S  V+A   ++   +            R +LF+DE+
Sbjct: 55  PPGVGKTTLARLLAQFCDAHFETVSA-VLAGVKEIRQAVEVAKQQAGQYGRRTILFVDEV 113

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++   P +ED  L  +    E PS       LSR  +    +        L D
Sbjct: 114 HRFNKSQQDAFLPFVEDGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEPALRKLVD 173

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R                   +RG     L+V D+A   +   + G  R     L    D 
Sbjct: 174 RALNE---------------ERGLGKRNLSVGDDAFRMLMAAADGDGRRMLNFLENASDL 218

Query: 233 AEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEP 292
           AE                      ++G D L         R   GG    + ISA     
Sbjct: 219 AEDGG-------------------EIGVDLLQSLLGDSRRRFDKGGEAFYDQISALHKSV 259

Query: 293 RDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           R +  D    +  +       P    R ++ +A + +G   P 
Sbjct: 260 RGSNPDAALYWFARMLDGGCDPLYIARRVVRMASEDIGNADPR 302


>gi|222111884|ref|YP_002554148.1| recombination factor protein rara [Acidovorax ebreus TPSY]
 gi|221731328|gb|ACM34148.1| AAA ATPase central domain protein [Acidovorax ebreus TPSY]
          Length = 442

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 76/330 (23%), Positives = 123/330 (37%), Gaps = 54/330 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRPR+L E  GQ            A +  +      +  GPPG+GKTT+A+++A 
Sbjct: 11  PLAERLRPRSLAEVIGQQHVLGPGMPLRLAFE--SGRPHSCILWGPPGVGKTTIARLMAE 68

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTN--------LEDRDVLFIDEIHRLSIIVEEILYPA 128
                F S S  V+    D+   +          ++ R ++F+DE+HR +   ++   P 
Sbjct: 69  AFDAQFISISA-VLGGVKDIRDAVQQAESARDGLMQQRTIVFVDEVHRFNKSQQDAFLPH 127

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           +E      +    E PS       LSR            +  PL               +
Sbjct: 128 VESGLFTFVGATTENPSFEVNSALLSRA--------AVYVLQPLGS-------------D 166

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEI-AMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           DLK IV +   L  L   + AA E     + G  R     L  +   A  A  + I    
Sbjct: 167 DLKQIVAKAQALQALPAIENAALERLIAYADGDARRLLNTLETLEVTASQAGIERI---- 222

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
            DA LL++  ++             + R   GG    +TISA     R +  D    +++
Sbjct: 223 EDAWLLQVLGER-------------MRRYDKGGEQFYDTISALHKSVRGSDPDAALYWLV 269

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +       PR   R ++ +AW+ +G+  P 
Sbjct: 270 RMLDGGADPRYMARRIVRMAWEDIGLADPR 299


>gi|167570877|ref|ZP_02363751.1| recombination factor protein RarA [Burkholderia oklahomensis C6786]
          Length = 436

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 73/335 (21%), Positives = 120/335 (35%), Gaps = 54/335 (16%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           V         LRP+TL +  GQ       K    A +  +     ++  GPPG+GKTTLA
Sbjct: 7   VEPRRPLAEALRPKTLADVIGQTHLLGEGKPLRLAFE--SGKPHSMILWGPPGVGKTTLA 64

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEI 124
           ++ A      F + S  V+    D+   +              +LF+DEIHR +   ++ 
Sbjct: 65  RLTALAFDCEFIALSA-VLGGVKDIREAMDQARDTLNRTGRHTILFVDEIHRFNKAQQDA 123

Query: 125 LYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           L P +E   +  +    E PS       LSR  +    +                     
Sbjct: 124 LLPFVESGLVTFIGATTENPSFEVNSALLSRAQVYVLKS--------------------- 162

Query: 183 YEIEDLKTIVQRGAK--LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
              ++L+ ++ R     L GLA  D+A   +   + G  R    LL + +  A  A   T
Sbjct: 163 LTEDELRQLLARAQDTALAGLAFEDKAVDTLVGYADGDARRFLNLLEQAQTAATSAGVTT 222

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I     ++A+   A                  R   GG    + ISA     R +  D  
Sbjct: 223 IDAAFVESAMTMNA-----------------RRFDKGGDNFYDQISALHKSVRGSNPDGA 265

Query: 301 EPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
             +  +       P+   R ++ +AW+ +G+  P 
Sbjct: 266 LYWFCRMLDGGADPKYLARRVVRMAWEDIGLADPR 300


>gi|74317514|ref|YP_315254.1| recombination factor protein RarA [Thiobacillus denitrificans ATCC
           25259]
 gi|74057009|gb|AAZ97449.1| putative helicase ATPase [Thiobacillus denitrificans ATCC 25259]
          Length = 442

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 72/324 (22%), Positives = 123/324 (37%), Gaps = 50/324 (15%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
             LRPRTL++  GQ       K    A    +  L  ++  GPPG+GKTTLA++ A+  G
Sbjct: 25  ERLRPRTLDDVVGQSHLLGPGKPLRLA--FDSGKLHSMILWGPPGVGKTTLARLTAQAFG 82

Query: 80  VNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
            +F + S  +     I +A + A +   L    +LF+DE+HR +   ++   P +E    
Sbjct: 83  ADFIAISAVLSGVKDIREAVERARMNQKLGRATILFVDEVHRFNKSQQDAFLPHVESGLF 142

Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
             +    E PS   V   LSR  +    +                        ++L  ++
Sbjct: 143 TFIGATTENPSFEVVGALLSRAQVYVLKS---------------------LTPDELGRLM 181

Query: 193 QRGAKLTGLAVTDEAACE-IAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           QR  +        +   + +A  + G  R    LL ++   A  A  +       + AL 
Sbjct: 182 QRALQELPSLKLADGVDKLLAAYADGDARKLLNLLEQLDTAARTAQVEEADAAFVENALA 241

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
           +                  + R   GG    + ISA     R +  D    ++++     
Sbjct: 242 Q-----------------SLRRFDKGGEAFYDQISALHKSVRGSDPDASLYWLVRMLDGG 284

Query: 312 RTPR--GRLLMPIAWQHLGIDIPH 333
             PR  GR L+ +A + +G+  P 
Sbjct: 285 ADPRYLGRRLVRMASEDIGLADPR 308


>gi|170732290|ref|YP_001764237.1| recombination factor protein RarA [Burkholderia cenocepacia MC0-3]
 gi|169815532|gb|ACA90115.1| AAA ATPase central domain protein [Burkholderia cenocepacia MC0-3]
          Length = 436

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 75/334 (22%), Positives = 116/334 (34%), Gaps = 50/334 (14%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
            V         LRP+TL E  GQ       K    A +  +     ++  GPPG+GKTTL
Sbjct: 6   QVEPRRPLAEALRPKTLAEVIGQTHLLGEGKPLRLAFE--SGKPHSMILWGPPGVGKTTL 63

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEE 123
           A++ A      F + S  V+    D+   +   +D         +LF+DEIHR +   ++
Sbjct: 64  ARLTALAFDCEFIALSA-VLGGVKDIRESMEQAKDTLNRTGRHTILFVDEIHRFNKGQQD 122

Query: 124 ILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
            L P +E   +  +    E PS       LSR  +    +        L  R        
Sbjct: 123 ALLPFVESGLVTFIGATTENPSFEVNSALLSRAQVYVLKSLNDDEMRQLLKRAQEIA--- 179

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
                           L GLA  D+A   +   + G  R    LL + +  A  A   TI
Sbjct: 180 ----------------LDGLAFDDKAIDTLVGYADGDARRFLNLLEQAQTAATSAGVATI 223

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
             +    A+   A                  R   GG    + ISA     R +  D   
Sbjct: 224 DADFVSNAMTLNA-----------------RRFDKGGDNFYDQISALHKSVRGSSPDGAL 266

Query: 302 PYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +  +       P+   R ++ +AW+ +G+  P 
Sbjct: 267 YWFCRMIDGGADPKYLARRIVRMAWEDIGLADPR 300


>gi|241760045|ref|ZP_04758143.1| recombination factor protein RarA [Neisseria flavescens SK114]
 gi|241319499|gb|EER55929.1| recombination factor protein RarA [Neisseria flavescens SK114]
          Length = 435

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 68/331 (20%), Positives = 113/331 (34%), Gaps = 48/331 (14%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
             +      LRP +L++  GQ       K    A +        +L  GPPG+GKTTLA+
Sbjct: 8   QPDAPLAERLRPHSLDDVIGQQHLIGEGKPLRVAVE--GGKPHSMLLWGPPGVGKTTLAR 65

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILY 126
           ++A+     F   S  V +   D+   +   E         +LF+DE+HR +   ++   
Sbjct: 66  ILAQSFNAQFLPVSA-VFSGVKDIREAIDKAEIALQQGRTTILFVDEVHRFNKAQQDAFL 124

Query: 127 PAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           P +E   L  +    E PS       LSR  +    +        L  +         + 
Sbjct: 125 PHVESGLLTFIGATTENPSFEVNPALLSRAQVYVLQSLSSDDLKKLIAKVLALPEYQEFT 184

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           I+         A+   +   D  A           R    L+ ++   A+    KT+T E
Sbjct: 185 IDV-------DAQELLVNTADGDA-----------RRLLNLIEQLLRAADTRRLKTLTAE 226

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
               +L                    I R   GG      ISA     R +  +    + 
Sbjct: 227 FLADSLGAQ-----------------IRRFDKGGESFYNQISALHKSVRGSHPNAALYWF 269

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +       PR   R ++ +AW+ +G+  P 
Sbjct: 270 CRMLDGGTDPRYLARRIVRMAWEDIGLADPR 300


>gi|206561377|ref|YP_002232142.1| recombination factor protein RarA [Burkholderia cenocepacia J2315]
 gi|198037419|emb|CAR53354.1| putative ATPase protein [Burkholderia cenocepacia J2315]
          Length = 441

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 75/334 (22%), Positives = 117/334 (35%), Gaps = 50/334 (14%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
            V         LRP+TL E  GQ       K    A +  +     ++  GPPG+GKTTL
Sbjct: 11  QVEPRRPLAEALRPKTLAEVIGQTHLLGEGKPLRLAFE--SGKPHSMILWGPPGVGKTTL 68

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEE 123
           A++ A      F + S  V+    D+   +   +D         +LF+DEIHR +   ++
Sbjct: 69  ARLTALAFDCEFIALSA-VLGGVKDIRESMEQAKDTLNRTGRHTILFVDEIHRFNKGQQD 127

Query: 124 ILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
            L P +E   +  +    E PS       LSR  +    +        L  R        
Sbjct: 128 ALLPFVESGLVTFIGATTENPSFEVNSALLSRAQVYVLKSLNDDEMRQLLKRAQEIA--- 184

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
                           L GLA  D+A   +   + G  R    LL + +  A  A   TI
Sbjct: 185 ----------------LDGLAFDDKAIDTLVGYADGDARRFLNLLEQAQTAATSAGVATI 228

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
             +   +A+   A                  R   GG    + ISA     R +  D   
Sbjct: 229 DADFVSSAMTLNA-----------------RRFDKGGDNFYDQISALHKSVRGSSPDGAL 271

Query: 302 PYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +  +       P+   R ++ +AW+ +G+  P 
Sbjct: 272 YWFCRMIDGGADPKYLARRIVRMAWEDIGLADPR 305


>gi|317402140|gb|EFV82732.1| hypothetical protein HMPREF0005_00317 [Achromobacter xylosoxidans
           C54]
          Length = 446

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 71/327 (21%), Positives = 120/327 (36%), Gaps = 43/327 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRPRTL +  GQ       K    A +  +     ++F GPPG+GKTTLA+++A 
Sbjct: 17  PLAERLRPRTLADVVGQSHLLGPDKPLRVAFE--SGRPHSMIFWGPPGVGKTTLARLMAD 74

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAME 130
                F + S  V+    D+   +T  +       R +LF+DE+HR +   ++   P +E
Sbjct: 75  GFDAQFIAISA-VLGGVKDIRDAVTVAQVAQGQGRRTILFVDEVHRFNKAQQDAFLPYVE 133

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
                 +    E PS       LSR  +    +        L DR  I    + +E +  
Sbjct: 134 SGLFTFIGATTENPSFEVNSALLSRARVYVLQSLTPEELQQLVDR-AITAFNDGHEEDAR 192

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             I              +A  ++A  + G  R     +  V + A+ A   T+     + 
Sbjct: 193 IHI------------DADAREQLAAWADGDARRLISAVEVVAESAQAAGRDTVDAAWLEI 240

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           +L +                  + R   GG    + ISA     R +  D    +  +  
Sbjct: 241 SLSQN-----------------LRRFDKGGDAFYDQISALHKSVRGSNPDAALYWFCRMI 283

Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIPH 333
                P+   R L+ +A + +G+  P 
Sbjct: 284 DGGADPKYLARRLVRMAVEDIGLADPR 310


>gi|161525591|ref|YP_001580603.1| recombination factor protein RarA [Burkholderia multivorans ATCC
           17616]
 gi|189349680|ref|YP_001945308.1| recombination factor protein RarA [Burkholderia multivorans ATCC
           17616]
 gi|221201180|ref|ZP_03574220.1| ATPase, AAA family [Burkholderia multivorans CGD2M]
 gi|221206366|ref|ZP_03579379.1| ATPase, AAA family [Burkholderia multivorans CGD2]
 gi|160343020|gb|ABX16106.1| AAA ATPase central domain protein [Burkholderia multivorans ATCC
           17616]
 gi|189333702|dbj|BAG42772.1| putative ATPase [Burkholderia multivorans ATCC 17616]
 gi|221173675|gb|EEE06109.1| ATPase, AAA family [Burkholderia multivorans CGD2]
 gi|221179030|gb|EEE11437.1| ATPase, AAA family [Burkholderia multivorans CGD2M]
          Length = 436

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 72/334 (21%), Positives = 116/334 (34%), Gaps = 50/334 (14%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
            V         LRP+TL +  GQ       K    A +  +     ++  GPPG+GKTTL
Sbjct: 6   QVEPRRPLAEALRPKTLADVIGQTHLLGEGKPLRLAFE--SGKPHSMILWGPPGVGKTTL 63

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEE 123
           A++ A      F + S  V+    D+   +   ++         +LF+DEIHR +   ++
Sbjct: 64  ARLTALAFDCEFIALSA-VLGGVKDIREAMDQAKETLNRTGRHTILFVDEIHRFNKGQQD 122

Query: 124 ILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
            L P +E   +  +    E PS       LSR  +    +        L  R        
Sbjct: 123 ALLPFVESGLVTFIGATTENPSFEVNSALLSRAQVYVLKSLTDDEMRQLLKRAQHIA--- 179

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
                           L GL   D+A   +   + G  R    LL + +  A  A   TI
Sbjct: 180 ----------------LDGLEFDDKAVDTLIGYADGDARRFLNLLEQAQTAASSAGVTTI 223

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
             +   +A+   A                  R   GG    + ISA     R +  D   
Sbjct: 224 DADFVGSAMTLNA-----------------RRFDKGGDNFYDQISALHKSVRGSSPDGAL 266

Query: 302 PYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +  +       P+   R ++ +AW+ +G+  P 
Sbjct: 267 YWFCRMVDGGADPKYLARRIVRMAWEDIGLADPR 300


>gi|107022056|ref|YP_620383.1| recombination factor protein RarA [Burkholderia cenocepacia AU
           1054]
 gi|116689000|ref|YP_834623.1| recombination factor protein RarA [Burkholderia cenocepacia HI2424]
 gi|105892245|gb|ABF75410.1| Recombination protein MgsA [Burkholderia cenocepacia AU 1054]
 gi|116647089|gb|ABK07730.1| Recombination protein MgsA [Burkholderia cenocepacia HI2424]
          Length = 436

 Score =  173 bits (438), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 75/334 (22%), Positives = 116/334 (34%), Gaps = 50/334 (14%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
            V         LRP+TL E  GQ       K    A +  +     ++  GPPG+GKTTL
Sbjct: 6   QVEPRRPLAEALRPKTLAEVIGQTHLLGEGKPLRLAFE--SGKPHSMILWGPPGVGKTTL 63

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEE 123
           A++ A      F + S  V+    D+   +   +D         +LF+DEIHR +   ++
Sbjct: 64  ARLTALAFDCEFIALSA-VLGGVKDIRESMEQAKDTLNRTGRHTILFVDEIHRFNKGQQD 122

Query: 124 ILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
            L P +E   +  +    E PS       LSR  +    +        L  R        
Sbjct: 123 ALLPFVESGLVTFIGATTENPSFEVNSALLSRAQVYVLKSLNDDEMRQLLKRAQEIA--- 179

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
                           L GLA  D+A   +   + G  R    LL + +  A  A   TI
Sbjct: 180 ----------------LDGLAFDDKAIDTLVGYADGDARRFLNLLEQAQTAATSAGVATI 223

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
             +    A+   A                  R   GG    + ISA     R +  D   
Sbjct: 224 DADFVSNAMTLNA-----------------RRFDKGGDNFYDQISALHKSVRGSSPDGAL 266

Query: 302 PYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +  +       P+   R ++ +AW+ +G+  P 
Sbjct: 267 YWFCRMIDGGADPKYLARRIVRMAWEDIGLADPR 300


>gi|187929625|ref|YP_001900112.1| recombination factor protein RarA [Ralstonia pickettii 12J]
 gi|309781609|ref|ZP_07676343.1| magnesium chelatase, subunit ChlI family [Ralstonia sp. 5_7_47FAA]
 gi|187726515|gb|ACD27680.1| AAA ATPase central domain protein [Ralstonia pickettii 12J]
 gi|308919584|gb|EFP65247.1| magnesium chelatase, subunit ChlI family [Ralstonia sp. 5_7_47FAA]
          Length = 435

 Score =  173 bits (438), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 71/328 (21%), Positives = 116/328 (35%), Gaps = 48/328 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP + ++  GQ       K     A A  E    ++  GPPG+GKTTLA+++A 
Sbjct: 2   PLAERLRPHSADDVIGQQHLLGPGKPL-RVAFASGEP-HSMILWGPPGVGKTTLARLMAN 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130
                F + S  V++   D+   +   E       R ++F+DE+HR +   ++   P +E
Sbjct: 60  AFDAEFIALSA-VLSGVKDIREAVERAEQFRAHGRRTLVFVDEVHRFNKSQQDAFLPHVE 118

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
                 +    E PS       LSR  +    +                        ++L
Sbjct: 119 SGLFTFIGATTENPSFEVNGALLSRAAVYVLKS---------------------LSDDEL 157

Query: 189 KTIVQRGAKLT-GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           K + +R  +   GL  T  A   I   + G  R     +  V   A             D
Sbjct: 158 KQLAERARQELGGLEWTPAALDAIVASADGDGRKLLNNIEIVARAARAQADGDAVPA-VD 216

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
            ALL  A+ +             + R   GG    + ISA     R +  D    +  + 
Sbjct: 217 EALLASALSEN------------LRRFDKGGDAFYDQISALHKSVRGSDPDGALYWFCRM 264

Query: 308 GFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                 PR   R ++ +AW+ +G+  P 
Sbjct: 265 LDGGADPRYLARRIVRMAWEDIGLADPR 292


>gi|311104419|ref|YP_003977272.1| magnesium chelatase subunit ChlI family protein 1 [Achromobacter
           xylosoxidans A8]
 gi|310759108|gb|ADP14557.1| magnesium chelatase, subunit ChlI family protein 1 [Achromobacter
           xylosoxidans A8]
          Length = 446

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 71/327 (21%), Positives = 119/327 (36%), Gaps = 43/327 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRPRTL +  GQ       K    A +  +     ++F GPPG+GKTTLA+++A 
Sbjct: 17  PLAERLRPRTLSDVVGQSHLLGPDKPLRVAFE--SGRPHSMIFWGPPGVGKTTLARLMAD 74

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAME 130
                F + S  V+    D+   +T  +       R +LF+DE+HR +   ++   P +E
Sbjct: 75  GFDAQFIAISA-VLGGVKDIRDAVTVAQVAQGQGRRTILFVDEVHRFNKAQQDAFLPYVE 133

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
                 +    E PS       LSR  +    +        L DR    +     E E +
Sbjct: 134 SGLFTFIGATTENPSFEVNSALLSRARVYVLQSLTAEELQQLVDRAVQALNDGLEEGERI 193

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
                         V  +A  ++A  + G  R     +  V + A+ A   T+     + 
Sbjct: 194 H-------------VDADAREQLAAWADGDARRLISAVEVVAESAQAAGRDTVDAAWLEI 240

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           +L +                  + R   GG    + ISA     R +  D    +  +  
Sbjct: 241 SLSQN-----------------LRRFDKGGDAFYDQISALHKSVRGSNPDAALYWFCRMI 283

Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIPH 333
                P+   R L+ +A + +G+  P 
Sbjct: 284 DGGADPKYLSRRLVRMAVEDIGLADPR 310


>gi|90415910|ref|ZP_01223843.1| hypothetical protein GB2207_01717 [marine gamma proteobacterium
           HTCC2207]
 gi|90332284|gb|EAS47481.1| hypothetical protein GB2207_01717 [marine gamma proteobacterium
           HTCC2207]
          Length = 443

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 75/333 (22%), Positives = 122/333 (36%), Gaps = 54/333 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP TL+ F GQ       K   EA +     L  ++F GPPG+GKTTLA+++A 
Sbjct: 13  PLAARMRPATLDGFYGQEHLIGLGKPLREAIE--GGTLHSMIFWGPPGVGKTTLAKIIAA 70

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAM 129
               +F S S  V++   ++ A +            + +LF+DE+HR +   ++   P +
Sbjct: 71  SADAHFESISA-VLSGVKEIRASIAKATEQRDLRGRKTILFVDEVHRFNKSQQDAFLPFV 129

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ED  +  +    E PS       LSR  +    +          D   I   +     + 
Sbjct: 130 EDGTVVFIGATTENPSFELNNALLSRCRVYVLKSL---------DNEQIKTVIQQALSDQ 180

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
              + +R  +L      DEA   +A  + G  R A  LL    D A  +           
Sbjct: 181 QSGLGERQLQL-----DDEALDLLASAADGDARRALNLLEIANDLASESGD--------- 226

Query: 248 AALLRLAIDKMGFDQLDLRYLTMI-----ARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
                          +D R L  +      R   GG    + ISA     R +  D    
Sbjct: 227 ------------LAAIDRRVLEQVLVGDTRRFDKGGEYFYDQISAMHKSVRGSSPDAALY 274

Query: 303 YMIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
           ++ +       P    R L+ +A + +G   P 
Sbjct: 275 WLCRMLDGGCDPIYIARRLVRMASEDIGNADPR 307


>gi|134295004|ref|YP_001118739.1| recombination factor protein RarA [Burkholderia vietnamiensis G4]
 gi|134138161|gb|ABO53904.1| Recombination protein MgsA [Burkholderia vietnamiensis G4]
          Length = 436

 Score =  172 bits (437), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 73/336 (21%), Positives = 125/336 (37%), Gaps = 54/336 (16%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
            V         LRP+TL E  GQ       K    A +  +     ++  GPPG+GKTTL
Sbjct: 6   QVEPRRPLAEALRPKTLAEVIGQTHLLGEGKPLRLAFE--SGKPHSMILWGPPGVGKTTL 63

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEE 123
           A++ A      F + S  V+    D+   +   +D         +LF+DEIHR +   ++
Sbjct: 64  ARLTALAFDCEFIALSA-VLGGVKDIREAMEQAKDTLNRTGRHTILFVDEIHRFNKGQQD 122

Query: 124 ILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
            L P +E   +  +    E PS       LSR  +    +                    
Sbjct: 123 ALLPFVESGLVTFIGATTENPSFEVNSALLSRAQVYVLKS-------------------- 162

Query: 182 FYEIEDLKTIVQRGAKL--TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
             + ++++ +++R  ++   GLA  D+A   +   + G  R    LL + +  A  A   
Sbjct: 163 -LDDDEMRQLLERAQQIALDGLAFDDKAVDTLIGYADGDARRFLNLLEQAQTAASSARVT 221

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           TI  +   +A+   A                  R   GG    + ISA     R +  D 
Sbjct: 222 TIDADFVSSAMTLNA-----------------RRFDKGGDNFYDQISALHKSVRGSSPDG 264

Query: 300 IEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
              +  +       P+   R ++ +AW+ +G+  P 
Sbjct: 265 ALYWFCRMIDGGADPKYLARRIVRMAWEDIGLADPR 300


>gi|293603799|ref|ZP_06686215.1| replication-associated recombination protein A [Achromobacter
           piechaudii ATCC 43553]
 gi|292817797|gb|EFF76862.1| replication-associated recombination protein A [Achromobacter
           piechaudii ATCC 43553]
          Length = 446

 Score =  172 bits (437), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 69/327 (21%), Positives = 120/327 (36%), Gaps = 43/327 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRPR+L +  GQ       K    A +  +     ++F GPPG+GKTTLA+++A 
Sbjct: 17  PLAERLRPRSLSDVVGQSHLLGPDKPLRVAFE--SGRPHSMIFWGPPGVGKTTLARLMAD 74

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAME 130
                F + S  V+    D+   +T  +       R +LF+DE+HR +   ++   P +E
Sbjct: 75  GFDAQFIAISA-VLGGVKDIREAVTVAQVAQGQGRRTILFVDEVHRFNKAQQDAFLPYVE 133

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
                 +    E PS       LSR  +    +        L DR    +     E E +
Sbjct: 134 SGLFTFIGATTENPSFEVNSALLSRARVYVLQSLSTEELQQLVDRAVHALNEGMDEGEAI 193

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +             +  +A  ++A  + G  R     +  V + A+ A   T+     + 
Sbjct: 194 R-------------IEPDAREQLAAWADGDARRLISAVEVVAESAQSAGRDTVDAAWLEI 240

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           +L +                  + R   GG    + ISA     R +  D    +  +  
Sbjct: 241 SLSQN-----------------LRRFDKGGDAFYDQISALHKSVRGSNPDAALYWFCRMI 283

Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIPH 333
                P+   R L+ +A + +G+  P 
Sbjct: 284 DGGADPKYLSRRLVRMAVEDIGLADPR 310


>gi|254252991|ref|ZP_04946309.1| hypothetical protein BDAG_02239 [Burkholderia dolosa AUO158]
 gi|124895600|gb|EAY69480.1| hypothetical protein BDAG_02239 [Burkholderia dolosa AUO158]
          Length = 436

 Score =  172 bits (437), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 73/336 (21%), Positives = 121/336 (36%), Gaps = 54/336 (16%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
            V         LRP+TL E  GQ       K    A +  +     ++  GPPG+GKTTL
Sbjct: 6   EVEPRRPLAEALRPKTLAEVIGQTHLLGEGKPLRLAFE--SGKPHSMILWGPPGVGKTTL 63

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEE 123
           +++ A      F + S  V+    D+   +   +D         +LF+DEIHR +   ++
Sbjct: 64  SRLTALAFDCEFIALSA-VLGGVKDIRDAMEQAKDTLNRTGRHTILFVDEIHRFNKGQQD 122

Query: 124 ILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
            L P +E   +  +    E PS       LSR  +    +                    
Sbjct: 123 ALLPFVESGLVTFIGATTENPSFEVNSALLSRAQVYVLKS-------------------- 162

Query: 182 FYEIEDLKTIVQRGAKL--TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
               ++++ +++R   +   GLA  D A   +   + G  R    LL + +  A  A   
Sbjct: 163 -LTDDEMRQLLKRAQDIALDGLAFDDNAVDTLIGYADGDARRFLNLLEQAQTAAASAGVA 221

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           TI  E    A+   A                  R   GG    + ISA     R +  D 
Sbjct: 222 TIDAEFVSNAMTLNA-----------------RRFDKGGDNFYDQISALHKSVRGSSPDG 264

Query: 300 IEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
              +  +       P+   R ++ +AW+ +G+  P 
Sbjct: 265 ALYWFCRMIDGGADPKYLARRIVRMAWEDIGLADPR 300


>gi|302877500|ref|YP_003846064.1| MgsA AAA+ ATPase-like [Gallionella capsiferriformans ES-2]
 gi|302580289|gb|ADL54300.1| MgsA AAA+ ATPase-like [Gallionella capsiferriformans ES-2]
          Length = 439

 Score =  172 bits (437), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 67/337 (19%), Positives = 118/337 (35%), Gaps = 50/337 (14%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           L      +      LRP+ ++E  GQ       +    A   ++  L  ++  GPPG+GK
Sbjct: 4   LFAAAQPDAPLAERLRPKHIDEVIGQSHLLGEGRPLRLA--FQSGRLHSMILWGPPGVGK 61

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSII 120
           TTLA+++A      F   S  V++   D+   +   +          +LF+DE+HR +  
Sbjct: 62  TTLARLMASAFDAEFMPLSA-VLSGVKDIREAIAQAQRVLQQNGRHTILFVDEVHRFNKS 120

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++   P +E   +  +    E PS       LSR  +             L +R     
Sbjct: 121 QQDAFLPFVEQGLVTFIGATTENPSFEVNNALLSRAQVYVLHALSEEELGQLFERAQAVA 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
                                GL+  D+A   +   + G  R    +L +++  AE A  
Sbjct: 181 MP-------------------GLSFADDAHERVIGYADGDARRLLNVLEQLQTAAETAGK 221

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             I     D  L +                  + R   GG    + ISA     R +  D
Sbjct: 222 TLIDSVFLDNTLAQN-----------------LRRFDKGGEAFYDQISALHKSVRGSNPD 264

Query: 299 LIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
               ++++        R   R ++ +AW+ +G+  P 
Sbjct: 265 AALYWLVRMLDGGADARYMARRIVRMAWEDIGLADPR 301


>gi|30249052|ref|NP_841122.1| recombination factor protein RarA [Nitrosomonas europaea ATCC
           19718]
 gi|30138669|emb|CAD84964.1| Uncharacterized ATPase related to the helicase subunit of the
           Holliday junction resolvase [Nitrosomonas europaea ATCC
           19718]
          Length = 439

 Score =  172 bits (436), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 72/328 (21%), Positives = 117/328 (35%), Gaps = 50/328 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRPRTL++  GQ       K    A +  +     ++  GPPG GKTTLA+++A 
Sbjct: 14  PLAERLRPRTLDDVVGQSHLLGPGKPLRLAFE--SGKPHSMILWGPPGSGKTTLARLMAH 71

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAM 129
                F + S  V++   D+   +   +          +LF+DE+HR +   ++   P +
Sbjct: 72  AFDAEFIAISA-VLSGVKDIREAIERAQITLQRTGRATLLFVDEVHRFNKAQQDAFLPHV 130

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E   +  +    E PS       LSR  + A         + L +R              
Sbjct: 131 EQGLITFIGATTENPSFEVNGALLSRAQVYALKALTDQELHQLFER-------------- 176

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
                 R   +  L   + A   +   + G  R    LL +V++ AE             
Sbjct: 177 -----ARSIAMLDLEFENTAIELLIGFADGDARRLLNLLEQVQNAAETE----------- 220

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
                  I K+  D L       + R   GG    + ISA     R +  D    ++ + 
Sbjct: 221 ------EIIKIDADYLSRVLARNVRRFDKGGDAFYDQISALHKSIRGSSPDAALYWLCRM 274

Query: 308 GFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                 PR  GR L+  A + +G+  P 
Sbjct: 275 LDGGADPRYIGRRLVRTATEDIGLADPR 302


>gi|221213645|ref|ZP_03586619.1| ATPase, AAA family [Burkholderia multivorans CGD1]
 gi|221166434|gb|EED98906.1| ATPase, AAA family [Burkholderia multivorans CGD1]
          Length = 436

 Score =  172 bits (436), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 72/334 (21%), Positives = 116/334 (34%), Gaps = 50/334 (14%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
            V         LRP+TL +  GQ       K    A +  +     ++  GPPG+GKTTL
Sbjct: 6   QVEPRRPLAEALRPKTLGDVIGQTHLLGEGKPLRLAFE--SGKPHSMILWGPPGVGKTTL 63

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEE 123
           A++ A      F + S  V+    D+   +   ++         +LF+DEIHR +   ++
Sbjct: 64  ARLTALAFDCEFIALSA-VLGGVKDIREAMDQAKETLNRTGRHTILFVDEIHRFNKGQQD 122

Query: 124 ILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
            L P +E   +  +    E PS       LSR  +    +        L  R        
Sbjct: 123 ALLPFVESGLVTFIGATTENPSFEVNSALLSRAQVYVLKSLTDDEMRQLLKRAQHIA--- 179

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
                           L GL   D+A   +   + G  R    LL + +  A  A   TI
Sbjct: 180 ----------------LDGLEFDDKAVDTLIGYADGDARRFLNLLEQAQTAASSAGVTTI 223

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
             +   +A+   A                  R   GG    + ISA     R +  D   
Sbjct: 224 DADFVGSAMTLNA-----------------RRFDKGGDNFYDQISALHKSVRGSSPDGAL 266

Query: 302 PYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +  +       P+   R ++ +AW+ +G+  P 
Sbjct: 267 YWFCRMVDGGADPKYLARRIVRMAWEDIGLADPR 300


>gi|192360498|ref|YP_001983014.1| ATPase, AAA family domain-containing protein [Cellvibrio japonicus
           Ueda107]
 gi|190686663|gb|ACE84341.1| ATPase, AAA family domain protein [Cellvibrio japonicus Ueda107]
          Length = 447

 Score =  172 bits (436), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 76/338 (22%), Positives = 125/338 (36%), Gaps = 44/338 (13%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L            + +RPR L+++ GQ    +  K   EA       L  ++  GPPG+G
Sbjct: 4   LFGNPAPAYQPLAARMRPRNLDDYIGQEHLLAAGKPLREAITRGQ--LHSMILWGPPGVG 61

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSI 119
           KT+LA++ A +    F + S  V++   ++ A +   E        + +LF+DE+HR + 
Sbjct: 62  KTSLAKLFAEQANARFETLSA-VMSGVKEIRAAVAAAEQERISTRRKTILFVDEVHRFNK 120

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             ++   P +ED     +    E PS       LSR  +                  G+ 
Sbjct: 121 SQQDAFLPYVEDGTFIFIGATTENPSFELNNALLSRCRVYVLR--------------GLQ 166

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                  +    T  +RG   +GL V DE    +A  + G  R +  LL    D A+   
Sbjct: 167 PEQLIQVMRQALTDAERGLGKSGLEVDDEVLNSLAQAADGDARKSLNLLEIAADLAQEQE 226

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
              +  E        LA D   FD               GG +  E ISA     R +  
Sbjct: 227 GVRVINEDVLR--EVLAADVRRFD--------------KGGDIFYEQISALHKSVRGSSP 270

Query: 298 DLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           D    ++++       P    R ++ +A + +G   P 
Sbjct: 271 DGALYWLVRMLDGGCDPLYIARRVVRMASEDIGNADPR 308


>gi|254246062|ref|ZP_04939383.1| ATPase [Burkholderia cenocepacia PC184]
 gi|124870838|gb|EAY62554.1| ATPase [Burkholderia cenocepacia PC184]
          Length = 441

 Score =  172 bits (436), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 75/334 (22%), Positives = 116/334 (34%), Gaps = 50/334 (14%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
            V         LRP+TL E  GQ       K    A +  +     ++  GPPG+GKTTL
Sbjct: 11  QVEPRRPLAEALRPKTLAEVIGQTHLLGEGKPLRLAFE--SGKPHSMILWGPPGVGKTTL 68

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEE 123
           A++ A      F + S  V+    D+   +   +D         +LF+DEIHR +   ++
Sbjct: 69  ARLTALAFDCEFIALSA-VLGGVKDIRESMEQAKDTLNRTGRHTILFVDEIHRFNKGQQD 127

Query: 124 ILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
            L P +E   +  +    E PS       LSR  +    +        L  R        
Sbjct: 128 ALLPFVESGLVTFIGATTENPSFEVNSALLSRAQVYVLKSLNDDEMRQLLKRAQEIA--- 184

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
                           L GLA  D+A   +   + G  R    LL + +  A  A   TI
Sbjct: 185 ----------------LDGLAFDDKAIDTLVGYADGDARRFLNLLEQAQTAATSAGVATI 228

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
             +    A+   A                  R   GG    + ISA     R +  D   
Sbjct: 229 DADFVSNAMTLNA-----------------RRFDKGGDNFYDQISALHKSVRGSSPDGAL 271

Query: 302 PYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +  +       P+   R ++ +AW+ +G+  P 
Sbjct: 272 YWFCRMIDGGADPKYLARRIVRMAWEDVGLADPR 305


>gi|239628694|ref|ZP_04671725.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239518840|gb|EEQ58706.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 438

 Score =  172 bits (436), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 87/343 (25%), Positives = 137/343 (39%), Gaps = 44/343 (12%)

Query: 2   MDREGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD    +  N  + E    S LRPRTL+E  GQ       K+   A KA  + L  ++F 
Sbjct: 1   MDLFDYMRENTMETESPLASRLRPRTLDEVVGQQHIVGVDKLLYRAIKA--DKLGSIIFY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDE 113
           GPPG GKTTLA+V+A     +F+  +  V A   D+  ++   +D       + +LF+DE
Sbjct: 59  GPPGTGKTTLAKVIANTTSADFKQINATV-AGKKDMEEVVKGAKDNMGMYGRKTILFVDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++ L P +ED  L L+    E P        LSR       +R+  L    +
Sbjct: 118 IHRFNKGQQDYLLPFVEDGTLILIGATTENPYFEVNGALLSR-------SRIFELKPLEK 170

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
           +     I    Y+ E       RG       + ++AA  +A  + G  R A   +     
Sbjct: 171 EDIRELIHRAVYDKE-------RGMGAYDPVIDEDAADFLADTANGDARAALNAVELGVL 223

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
             E A    I     + A+ +  I K             + R    G    +T+SA +  
Sbjct: 224 TTERAEDGKI---HINLAVAQECIQKR------------VVRYDKNGDNHYDTVSAFIKS 268

Query: 292 PRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
            R +  D    Y+ +  +     +   R +M  A + +G   P
Sbjct: 269 MRGSDPDAAVYYLARMLYAGEDIKFIARRIMICASEDVGNADP 311


>gi|167837525|ref|ZP_02464408.1| recombination factor protein RarA [Burkholderia thailandensis
           MSMB43]
          Length = 436

 Score =  172 bits (436), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 72/335 (21%), Positives = 121/335 (36%), Gaps = 54/335 (16%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           V         LRP+TL +  GQ       K    A +  +     ++  GPPG+GKTTLA
Sbjct: 7   VEPRRPLAEALRPKTLADVIGQTHLLGEGKPLKLAFE--SGKPHSMILWGPPGVGKTTLA 64

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEI 124
           ++ A      F + S  V+    D+   +              +LF+DEIHR +   ++ 
Sbjct: 65  RLTALAFDCEFIALSA-VLGGVKDIREAMEQARDTLNRTGRHTILFVDEIHRFNKAQQDA 123

Query: 125 LYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           L P +E   +  +    E PS       LSR  +    +                     
Sbjct: 124 LLPFVESGLVTFIGATTENPSFEVNSALLSRAQVYVLKSLA------------------- 164

Query: 183 YEIEDLKTIVQRGAK--LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
              ++L+ +++R     L GLA   +A   +   + G  R    LL + +  A  A   T
Sbjct: 165 --EDELRQLLKRAQDTALDGLAFDGKAVDTLVGYADGDARRFLNLLEQAQTAATSAGVTT 222

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I     ++A+   A                  R   GG    + ISA     R +  D  
Sbjct: 223 IDAAFVESAMTMNA-----------------RRFDKGGDNFYDQISALHKSVRGSSPDGA 265

Query: 301 EPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
             ++ +       P+   R ++ +AW+ +G+  P 
Sbjct: 266 LYWLCRMLDGGADPKYLARRVVRMAWEDIGLADPR 300


>gi|299137091|ref|ZP_07030274.1| AAA ATPase central domain protein [Acidobacterium sp. MP5ACTX8]
 gi|298601606|gb|EFI57761.1| AAA ATPase central domain protein [Acidobacterium sp. MP5ACTX8]
          Length = 447

 Score =  172 bits (436), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 80/329 (24%), Positives = 123/329 (37%), Gaps = 48/329 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RPR+L+EF GQ              +    A   +LF GPPG+GKTTLA+++AR
Sbjct: 21  PLAERMRPRSLDEFFGQQHLLGPGMPLRLQIERDDSA--SLLFWGPPGVGKTTLAKIIAR 78

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130
           E   +F   S  V++   ++  ++   E       R +LF+DEIHR +   ++   P +E
Sbjct: 79  ETQASFIEFSA-VLSGIKEIKQVMVEAEKAAEFGSRTILFVDEIHRFNKAQQDAFLPYVE 137

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
              + L+    E PS       LSR  +             L  R               
Sbjct: 138 RGTIRLIGATTENPSFEINAALLSRCRVYTLRALGQDEVVALLQR--------------A 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
               +RG     L V + A   IA  S G  R A   L       E    K +T+ +A  
Sbjct: 184 LQDAERGLGALQLEVEEGALEAIASYSSGDARNALNALEVGAKLTEGRGEKLLTKALAAE 243

Query: 249 ALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           AL +     DK G    D+                   ISA     R++  D    ++ +
Sbjct: 244 ALQQRVLLYDKKGEQHYDI-------------------ISALHKSVRNSDADAALYWLGR 284

Query: 307 QGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
             F    P    R ++ +A + +G+  P 
Sbjct: 285 MLFAGEDPMYVARRVVRMAVEDIGLAAPE 313


>gi|300690797|ref|YP_003751792.1| Replication-associated recombination protein A [Ralstonia
           solanacearum PSI07]
 gi|299077857|emb|CBJ50495.2| Replication-associated recombination protein A [Ralstonia
           solanacearum PSI07]
          Length = 436

 Score =  172 bits (435), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 72/328 (21%), Positives = 119/328 (36%), Gaps = 48/328 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP +++E  GQ       K     A A  E    ++  GPPG+GKTTLA+++A 
Sbjct: 2   PLAERLRPHSVDEVIGQQHLLGPGKPL-RVAFASGEP-HSMILWGPPGVGKTTLARLMAD 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130
                F + S  V++   D+   +   E       R ++F+DE+HR +   ++   P +E
Sbjct: 60  AFDAEFIALSA-VLSGVKDIREAVERAEQFRAHGRRTLVFVDEVHRFNKSQQDAFLPHVE 118

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
                 +    E PS       LSR  +    +                        ++L
Sbjct: 119 SGLFTFIGATTENPSFEVNGALLSRAAVYVLKS---------------------LSDDEL 157

Query: 189 KTIVQRGAKLT-GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           K + +R  +   GL  T  A   +   + G  R     +  V   A  + A        D
Sbjct: 158 KQLAERARQELGGLEWTPTALDAVVASADGDGRKLLNNIEIVTRAAR-SQAGGDAVPTID 216

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
            ALL  A+ +             + R   GG    + ISA     R +  D    +  + 
Sbjct: 217 EALLASALSEN------------LRRFDKGGDAFYDQISALHKSVRGSDPDGALYWFCRM 264

Query: 308 GFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                 PR   R ++ +AW+ +G+  P 
Sbjct: 265 LDGGADPRYLARRIVRMAWEDIGLADPR 292


>gi|121595667|ref|YP_987563.1| recombination factor protein RarA [Acidovorax sp. JS42]
 gi|120607747|gb|ABM43487.1| Recombination protein MgsA [Acidovorax sp. JS42]
          Length = 442

 Score =  172 bits (435), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 76/330 (23%), Positives = 123/330 (37%), Gaps = 54/330 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRPR+L E  GQ            A +  +      +  GPPG+GKTT+A+++A 
Sbjct: 11  PLAERLRPRSLAEVIGQQHVLGPGMPLRLAFE--SGRPHSCILWGPPGVGKTTIARLMAE 68

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTN--------LEDRDVLFIDEIHRLSIIVEEILYPA 128
                F S S  V+    D+   +          ++ R ++F+DE+HR +   ++   P 
Sbjct: 69  AFDAQFISISA-VLGGVKDIRDAVQLAESARDGLMQQRTIVFVDEVHRFNKSQQDAFLPH 127

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           +E      +    E PS       LSR            +  PL               +
Sbjct: 128 VESGLFTFVGATTENPSFEVNSALLSRA--------AVYVLQPLGS-------------D 166

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEI-AMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           DLK IV +   L  L   + AA E     + G  R     L  +   A  A  + I    
Sbjct: 167 DLKQIVAKAQALQALPAIENAALERLIAYADGDARRLLNTLETLEVTASQAGIERI---- 222

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
            DA LL++  ++             + R   GG    +TISA     R +  D    +++
Sbjct: 223 EDAWLLQVLGER-------------MRRYDKGGEQFYDTISALHKSVRGSDPDAALYWLV 269

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +       PR   R ++ +AW+ +G+  P 
Sbjct: 270 RMLDGGADPRYMARRIVRMAWEDIGLADPR 299


>gi|291562233|emb|CBL41049.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [butyrate-producing bacterium SS3/4]
          Length = 458

 Score =  172 bits (435), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 85/344 (24%), Positives = 139/344 (40%), Gaps = 44/344 (12%)

Query: 2   MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD    +  N  ++++ + S +RP TL+E  GQ       K+   A KA  + L  V+F 
Sbjct: 15  MDLFDYMRANTMEKESPLASRMRPTTLDEVVGQKHIIGKDKLLYRAIKA--DKLGSVIFY 72

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDE 113
           GPPG GKTTLA+V+A      F   +  V A   D+  ++ N +D       + +LF+DE
Sbjct: 73  GPPGTGKTTLAKVIANTTSARFEQINATV-AGKKDMEEIVKNAKDSIGMYGQKTILFVDE 131

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++ L P +ED  + L+    E P        LSR       +R+  L    +
Sbjct: 132 IHRFNKSQQDYLLPFVEDGTITLIGATTENPYFEVNNALLSR-------SRIFELKPLEK 184

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
                 +    Y+ E       +G       +TDEAA  +A  + G  R A   +     
Sbjct: 185 QDIRELVMRAVYDTE-------KGMGTYSADITDEAADFLADVANGDARAALNAVEL--- 234

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
                    +T + +D   + + ID              + R    G    +TISA +  
Sbjct: 235 -------GILTTDKSDDGKIHITIDVAAEC-----IQKRVVRYDHDGDNHYDTISAFIKS 282

Query: 292 PRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            R +  D    Y+ +  +     +   R +M  A + +G   P+
Sbjct: 283 MRGSDPDAAVYYLARMLYAGEDVKFIARRIMICASEDVGNADPN 326


>gi|299066065|emb|CBJ37246.1| Replication-associated recombination protein A [Ralstonia
           solanacearum CMR15]
          Length = 449

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 71/339 (20%), Positives = 117/339 (34%), Gaps = 48/339 (14%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            L              LRP +++E  GQ       K     A A  E    ++  GPPG+
Sbjct: 4   SLFQDAPPAHMPLAERLRPHSVDEVIGQQHLLGPSKPL-RVAFASGEP-HSMILWGPPGV 61

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSI 119
           GKTTLA+++A      F + S  V++   D+   +   E       R ++F+DE+HR + 
Sbjct: 62  GKTTLARLMADAFDAEFIALSA-VLSGVKDIREAVERAEQFRAHGRRTLVFVDEVHRFNK 120

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             ++   P +E      +    E PS       LSR  +    +                
Sbjct: 121 SQQDAFLPHVESGLFTFIGATTENPSFEVNGALLSRAAVYVLKS---------------- 164

Query: 178 IRLNFYEIEDLKTIVQRGAKLT-GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
                   ++LK + +R  +   GL     A   +   + G  R     +  V   A   
Sbjct: 165 -----LSDDELKQLAERARQELGGLEWAPAALDAVVASADGDGRKLLNNIEIVTRAARAQ 219

Query: 237 HAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAI 296
                     D ALL  A+ +             + R   GG    + ISA     R + 
Sbjct: 220 ADGETVPA-IDEALLASALSEN------------LRRFDKGGDAFYDQISALHKSVRGSD 266

Query: 297 EDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            D    +  +       PR   R ++ +AW+ +G+  P 
Sbjct: 267 PDAALYWFCRMLDGGADPRYLARRIVRMAWEDIGLADPR 305


>gi|291547110|emb|CBL20218.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [Ruminococcus sp. SR1/5]
          Length = 440

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 86/348 (24%), Positives = 135/348 (38%), Gaps = 52/348 (14%)

Query: 2   MDREGLL-SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD      S+ + QE    S LRPRTL+E  GQ       K+   A KA  + L  V+F 
Sbjct: 1   MDLFEYAKSKTLDQESPLASRLRPRTLDEVVGQQHIVGKDKLLYRAIKA--DKLTSVIFY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDE 113
           GPPG GKTTLA+V+A     +F   +  V A   D+ A++   +D       + +LFIDE
Sbjct: 59  GPPGTGKTTLAKVIANTTSASFTQINATV-AGKKDMEAVVKQAQDDLGMYGKKTILFIDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++ L P +ED  + L+    E P        LSR  +    +        L 
Sbjct: 118 IHRFNKGQQDYLLPFVEDGTIILIGATTENPYFEVNGALLSRSIIFELKSLEIPEIKELI 177

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR--V 229
            R                   +RG    G  + ++A   +A  + G  R A   +    +
Sbjct: 178 LR--------------AVNDPERGMGSYGAVIEEDALEFLADMAGGDARSALNAIELGIL 223

Query: 230 RDFAEVAHAKTITREIADAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISA 287
               +      +T E+A   + +     DK G +  D+                   ISA
Sbjct: 224 TTPRDTDGKIHLTLEVASECIQKRVVRYDKNGDNHYDI-------------------ISA 264

Query: 288 GLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +   R +  D    Y+ +  +     +   R +M +A + +G   P 
Sbjct: 265 FIKSMRGSDPDAAVYYLAKMLYAGEDVKFIARRIMILASEDIGNADPQ 312


>gi|154502582|ref|ZP_02039642.1| hypothetical protein RUMGNA_00395 [Ruminococcus gnavus ATCC 29149]
 gi|153796774|gb|EDN79194.1| hypothetical protein RUMGNA_00395 [Ruminococcus gnavus ATCC 29149]
          Length = 438

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 79/342 (23%), Positives = 127/342 (37%), Gaps = 42/342 (12%)

Query: 2   MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD    +     ++++ + S +RP+TLEE  GQ       K+   A KA  + L  ++F 
Sbjct: 1   MDLFDYMREKTQEQESPLASRMRPQTLEEVVGQQHIIGKDKLLYRAIKA--DKLGSIIFY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRDVLFIDEI 114
           GPPG GKTTLA+V+A      F+  +  V  K        +   LL     + +LFIDEI
Sbjct: 59  GPPGTGKTTLAKVIAHTTSAEFKQINATVAGKKDMEQVVNEAKELLGMYRKKTILFIDEI 118

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++ L P +ED  + L+    E P        +SR ++    +        L  
Sbjct: 119 HRFNKGQQDYLLPFVEDGTITLIGATTENPYFEVNGALISRSSVFELKSLEKEDIRTLLK 178

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R         Y+         +G       + ++A   +A  S G  R A   +      
Sbjct: 179 R-------AVYDE-------NKGMGSFHAEIDEDALEFLADVSGGDARSALNAIELGVLT 224

Query: 233 AEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEP 292
            E +    I                   D         + R   GG    +TISA +   
Sbjct: 225 TERSEDGKIHIT---------------LDVASECIQKRVVRYDKGGDNHYDTISAFIKSM 269

Query: 293 RDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           R +  D    Y+ +  +     +   R +M  A + +G   P
Sbjct: 270 RGSDPDAAVYYLAKMLYAGEDIKFIARRIMICAAEDVGNADP 311


>gi|213027805|ref|ZP_03342252.1| Holliday junction DNA helicase B [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 150

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 72/139 (51%), Positives = 94/139 (67%)

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
                G+ ++D+ A E+A R+RGTPRIA RLLRRVRDFAEV H   I+ EIA  AL  L 
Sbjct: 10  AQGTWGVEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGAISAEIAAQALDMLN 69

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED++EPY+IQQGF+QRTP
Sbjct: 70  VDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTP 129

Query: 315 RGRLLMPIAWQHLGIDIPH 333
           RGR+    AW H GI  P 
Sbjct: 130 RGRMATVRAWNHFGITPPE 148


>gi|331702365|ref|YP_004399324.1| AAA ATPase central domain-containing protein [Lactobacillus
           buchneri NRRL B-30929]
 gi|329129708|gb|AEB74261.1| AAA ATPase central domain protein [Lactobacillus buchneri NRRL
           B-30929]
          Length = 441

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 72/349 (20%), Positives = 133/349 (38%), Gaps = 62/349 (17%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M +E L + N        S +RP+TL++F GQ +     KV  E  +  ++ L  ++F G
Sbjct: 1   MKQESLFAGNQDGNQPLASRVRPKTLDQFVGQHQLVGKGKVLREIIE--SDQLPSIIFWG 58

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLT------NLEDRDVLFIDEIH 115
           PPG+GKTTLA+++A++    F + S  V +   ++  ++        +  + ++F+DEIH
Sbjct: 59  PPGVGKTTLAEIIAKKTQAKFVTFSA-VTSGIKEIREIMKDAEANREMGGKTIVFVDEIH 117

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P +E   + L+    E PS       LSR                    
Sbjct: 118 RFNKAQQDAFLPFVERGSITLIGATTENPSFEINSALLSRCK------------------ 159

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAK------LTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
                 L   E +D+  ++ +  K         + + D+A  E+A  + G  R+A   L 
Sbjct: 160 ---VFVLQPLETDDIVQLIHQTLKNPAAFPKETIEIDDQAVKEVAEFANGDARVALNTLE 216

Query: 228 RVRDFAEVAHAKTITREIADAAL---LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIET 284
              + +     K          L        DK G +  ++                   
Sbjct: 217 MAVNNSPKQDGKVTVSTDNLHQLMNTKSFLYDKHGEEHYNI------------------- 257

Query: 285 ISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
           ISA     R++  D    ++ +       P    R ++  A + +G+  
Sbjct: 258 ISALHKSMRNSDPDAAVYWLTRMLSGGEDPLYIARRMVRFASEDIGLAD 306


>gi|311694708|gb|ADP97581.1| recombination factor protein RarA [marine bacterium HP15]
          Length = 445

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 81/328 (24%), Positives = 132/328 (40%), Gaps = 55/328 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP +L ++ GQ       K    A +     L  ++  GPPG+GKTT AQ++A 
Sbjct: 14  PLAARMRPASLNDYVGQAHLVGPGKPLRRAVEQGQ--LHSMILWGPPGVGKTTFAQLLAN 71

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAM 129
              ++F + S  V++   ++ A++    +R        +LF+DE+HR +   ++   P +
Sbjct: 72  VGDLSFETVSA-VLSGVKEIRAVVERARNRKQSQGRDTLLFVDEVHRFNKSQQDAFLPHI 130

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ED     +    E PS       LSR       TRV +L N               E ED
Sbjct: 131 EDGTFIFVGATTENPSFELNSALLSR-------TRVYVLKN--------------LEEED 169

Query: 188 LKTIVQRGAKLT-----GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           +  +++R   +       L V ++    +A  S G  R A  +L    D AE   A T  
Sbjct: 170 ILQLLRRALTVDEGFGGRLRVDEDVLTLMAAASGGDARRALNILEVAADLAEPDEAGT-- 227

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
                        D++  DQL+    T + R   GG V  + ISA     R +  D    
Sbjct: 228 -------------DRVTADQLEQVMQTSLRRFDKGGDVFYDQISALHKSVRGSDPDGSLY 274

Query: 303 YMIQQGFIQRTPR--GRLLMPIAWQHLG 328
           ++ +       P    R L+ IA + +G
Sbjct: 275 WLCRMLDGGCDPLYVARRLVRIASEDIG 302


>gi|238026471|ref|YP_002910702.1| recombination factor protein RarA [Burkholderia glumae BGR1]
 gi|237875665|gb|ACR27998.1| AAA ATPase, central region [Burkholderia glumae BGR1]
          Length = 436

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 71/334 (21%), Positives = 112/334 (33%), Gaps = 50/334 (14%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
            V         LRP+TL E  GQ     + K    A +  +     ++  GPPG+GKTTL
Sbjct: 6   EVEPRRPLAEALRPKTLAEVIGQTHLLGDGKPLRLAFE--SGKPHSMILWGPPGVGKTTL 63

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEE 123
           A++ A      F + S  V+    D+   +              +LF+DEIHR +   ++
Sbjct: 64  ARLTAHAFDCEFIAISA-VLGGVKDIRESMEQARETLNRSGRHTILFVDEIHRFNKSQQD 122

Query: 124 ILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
            L P +E   +  +    E PS       LSR  +    +        L  R        
Sbjct: 123 ALLPFVESGLVTFIGATTENPSFEVNSALLSRAQVYVLKSLSDDEMRQLLARAQQIA--- 179

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
                           L GL     A   +   + G  R    LL + +  A  A    I
Sbjct: 180 ----------------LDGLEFEPLAVDTLIGYADGDARRFLNLLEQAQTAALSARTNRI 223

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
             +   +A+   A                  R   GG    + ISA     R +  D   
Sbjct: 224 DADFVASAMTLNA-----------------RRFDKGGDNFYDQISALHKSVRGSNPDAAL 266

Query: 302 PYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +  +       P+   R ++ +AW+ +G+  P 
Sbjct: 267 YWFCRMLDGGADPKYLSRRIVRMAWEDIGLADPR 300


>gi|296313690|ref|ZP_06863631.1| replication-associated recombination protein A [Neisseria
           polysaccharea ATCC 43768]
 gi|296839751|gb|EFH23689.1| replication-associated recombination protein A [Neisseria
           polysaccharea ATCC 43768]
          Length = 436

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 72/333 (21%), Positives = 114/333 (34%), Gaps = 49/333 (14%)

Query: 12  VSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           V + DA +   LRP TL++  GQ       K    A +        +L  GPPG+GKTTL
Sbjct: 6   VREPDAPLAERLRPHTLDDVVGQEHLIGEGKPLRVAVE--GGKPHSMLLWGPPGVGKTTL 63

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEI 124
           A+++A+     F   S  V +   D+   +   E         +LF+DE+HR +   ++ 
Sbjct: 64  ARILAQSFNAQFLPVSA-VFSGVKDIREAIDKAEIALQQGRATILFVDEVHRFNKAQQDA 122

Query: 125 LYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             P +E   L  +    E PS       LSR  +    +        L  +         
Sbjct: 123 FLPHVESGLLTFIGATTENPSFEVNPALLSRAQVYVLQSLSSDDLKKLIAKVLALPEYQA 182

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           + IE         A+   +   D  A  +        R+A                KT+T
Sbjct: 183 FTIEA-------DAQELLVNTADGDARRLLNLLEQLLRVADTC-----------RLKTLT 224

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            E    +L                    I R   GG      ISA     R +  +    
Sbjct: 225 AEFLADSLGAQ-----------------IRRFDKGGESFYNQISALHKSVRGSHPNAALY 267

Query: 303 YMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +  +       PR   R ++ +AW+ +G+  P 
Sbjct: 268 WFCRMLDGGTDPRYLARRIVRMAWEDIGLADPR 300


>gi|329120562|ref|ZP_08249225.1| replication-associated recombination protein A [Neisseria
           bacilliformis ATCC BAA-1200]
 gi|327460786|gb|EGF07120.1| replication-associated recombination protein A [Neisseria
           bacilliformis ATCC BAA-1200]
          Length = 456

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 67/331 (20%), Positives = 109/331 (32%), Gaps = 48/331 (14%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
             +      LRP TL +  GQ       K    A +        +L  GPPG+GKTTLA+
Sbjct: 27  QPDAPLAERLRPHTLADVIGQQHLIGEGKPLRVAVE--GGKPHSMLLWGPPGVGKTTLAR 84

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILY 126
           ++A+     F   S  V +   D+   +   E         +LF+DE+HR +   ++   
Sbjct: 85  ILAQSFNAQFLPVSA-VFSGVKDIREAIDKAEIALQQGRGTILFVDEVHRFNKAQQDAFL 143

Query: 127 PAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           P +E   L  +    E PS       LSR  +    +      N L  +           
Sbjct: 144 PHVESGLLTFIGATTENPSFEVNPALLSRAQVYVLQSLSADDLNALTGKVLAL------- 196

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            E     +++ A+   +   D  A  +                     A +    T+T E
Sbjct: 197 PEYRNFAIEQDARELLVNTADGDARRLLNLLEQL-----------LRAAAMRGLNTLTAE 245

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
               +L                    I R   GG      ISA     R +  +    + 
Sbjct: 246 FLADSLGAQ-----------------IRRFDKGGESFYNQISALHKSVRGSHPNAALYWF 288

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +       PR   R ++ +AW+ +G+  P 
Sbjct: 289 CRMLDGGTDPRYLARRIVRMAWEDIGLADPR 319


>gi|301632691|ref|XP_002945415.1| PREDICTED: replication-associated recombination protein A-like
           [Xenopus (Silurana) tropicalis]
          Length = 435

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 79/330 (23%), Positives = 124/330 (37%), Gaps = 54/330 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRPRTL E  GQ            A +  +      +  GPPG+GKTT+A+++A 
Sbjct: 11  PLAERLRPRTLGEVIGQQHVLGPGMPLRLAFE--SGRPHSCILWGPPGVGKTTIARLMAE 68

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE--------DRDVLFIDEIHRLSIIVEEILYPA 128
                F S S  V+    D+   +   E         R ++F+DE+HR +   ++   P 
Sbjct: 69  AFDAQFISISA-VLGGVKDIRDAVQLAERARDGLAPQRTIVFVDEVHRFNKSQQDAFLPH 127

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           +E      +    E PS       LSR T+         +  PL               +
Sbjct: 128 VESGLFTFVGATTENPSFEVNSALLSRATV--------YVLQPLA-------------AD 166

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEI-AMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           DLK IV +   L  L   +  A E     + G  R     L  +   A  A   T+T   
Sbjct: 167 DLKQIVAKAQALQALPAIENEALERLVAYADGDARRLLNTLETLSVTAGQAQLATLT--- 223

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
            DA LL++  ++             + R   GG    +TISA     R +  D    +++
Sbjct: 224 -DAWLLQVLGER-------------MRRYDKGGEQFYDTISALHKSVRGSDPDAALYWLV 269

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +       PR   R ++ +AW+ +G+  P 
Sbjct: 270 RMLDGGADPRYMARRIVRMAWEDVGLADPR 299


>gi|332285169|ref|YP_004417080.1| ATPase [Pusillimonas sp. T7-7]
 gi|330429122|gb|AEC20456.1| ATPase [Pusillimonas sp. T7-7]
          Length = 443

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 72/350 (20%), Positives = 124/350 (35%), Gaps = 58/350 (16%)

Query: 1   MMDREGLLSRNVS--QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M   + L S   S          +RPRTL +  GQ       K    A    +     ++
Sbjct: 1   MASSQDLFSNAASMHAHAPLAERMRPRTLADVVGQAHLLGPGKPLKVA--FDSGRPHSMI 58

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFID 112
           F GPPG+GKTTLA+++A      F + S  V+    D+   + + +       R +LF+D
Sbjct: 59  FWGPPGVGKTTLARLMADGFDAQFLAMSA-VLGGVKDIREAVVSAQVAQGQGRRTILFVD 117

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           E+HR +   ++   P +E      +    E PS       LSR  +    +         
Sbjct: 118 EVHRFNKAQQDAFLPYVESGLFTFIGATTENPSFEVNSALLSRARVYVLQSLA------- 170

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLT-----GLAVTDEAACEIAMRSRGTPRIAGRL 225
                         +E+L+ +++R   +       L     A  ++A  + G  R     
Sbjct: 171 --------------LEELQLLIERAIAILNQDGDPLQFDPAACEQLARWADGDARRVINA 216

Query: 226 LRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETI 285
           +  V + A  A    I  E  + +L +                  + R   GG    + I
Sbjct: 217 IEVVAESARGAGRTLIDSEWLETSLSQN-----------------LRRFDKGGDAFYDQI 259

Query: 286 SAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           SA     R +  D    +  +       PR   R ++ +A + +G+  P 
Sbjct: 260 SALHKAVRGSDPDAALYWFARMLDGGADPRYLSRRIVRMAIEDIGLADPR 309


>gi|325205964|gb|ADZ01417.1| magnesium chelatase, subunit ChlI family [Neisseria meningitidis
           M04-240196]
          Length = 436

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 75/333 (22%), Positives = 116/333 (34%), Gaps = 49/333 (14%)

Query: 12  VSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
             + DA +   LRP TL++  GQ       K    A +        +L  GPPG+GKTTL
Sbjct: 6   AREPDAPLAERLRPHTLDDVVGQEHLIGEGKPLRVAVE--GGKPHSMLLWGPPGVGKTTL 63

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEI 124
           A+++A+     F   S  V +   D+   +   E         +LF+DE+HR +   ++ 
Sbjct: 64  ARILAQSFNAQFLPVSA-VFSGVKDIREAIDKAEIALQQGRATILFVDEVHRFNKAQQDA 122

Query: 125 LYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             P +E   L  +    E PS       LSR  +    +        L  +         
Sbjct: 123 FLPHVESGLLTFIGATTENPSFEVNPALLSRAQVYVLQSLSSDDLKKLIAKVLALPEYQE 182

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           + IE         A+   +   D  A           R    LL ++   AE    KT+T
Sbjct: 183 FTIET-------DAQKLLVNTADGDA-----------RRLLNLLEQLLGAAETRRLKTLT 224

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            E    +L                    I R   GG      ISA     R +  +    
Sbjct: 225 AEFLADSLGAQ-----------------IRRFDKGGESFYNQISALHKSVRGSHPNAALY 267

Query: 303 YMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +  +       PR   R ++ IAW+ +G+  P 
Sbjct: 268 WFCRMLDGGTDPRYLARRIVRIAWEDIGLADPR 300


>gi|326391411|ref|ZP_08212948.1| AAA ATPase central domain protein [Thermoanaerobacter ethanolicus
           JW 200]
 gi|325992546|gb|EGD51001.1| AAA ATPase central domain protein [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 443

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 74/341 (21%), Positives = 136/341 (39%), Gaps = 49/341 (14%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            +    V +       +RP+TL+EF GQ       K+  E  +   + +  ++  GPPG+
Sbjct: 7   SIFDNEVKKNKPLADRMRPKTLDEFVGQEHLLGKGKLLRELIEK--DNITSMILWGPPGV 64

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSI 119
           GKTTLA ++A      F + S  V++   ++  ++   E       R V+FIDEIHR + 
Sbjct: 65  GKTTLAMIIANMTNSKFITFSA-VLSGIKEIKEIMAKAELDAMYGTRTVVFIDEIHRFNK 123

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             ++   P +E   + L+    E PS       LSR  +         +  PL +   + 
Sbjct: 124 AQQDAFLPHVEKGNIILIGATTENPSFEVNSALLSRSKV--------FVMKPLTEEDLLV 175

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV-A 236
           +      ++      +RG  +  + ++ +   +IA+ + G  R+A   L      AEV  
Sbjct: 176 L------LKRALRDKERGLGMYDIEISGDQLKKIALFANGDARVALNTLEIAVMAAEVIE 229

Query: 237 HAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRD 294
             + +T +I   A+ +     DK G +  +L                   ISA     R+
Sbjct: 230 GKRIVTDDILADAMQKKTLLYDKEGEEHYNL-------------------ISAFHKSLRN 270

Query: 295 AIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +  D    ++ +       P    R ++  A + +G+  P 
Sbjct: 271 SDWDAAVYWLARMLEAGEDPLYVARRMIRFASEDIGLADPQ 311


>gi|207723627|ref|YP_002254025.1| atpase related to the helicase subunit of the holliday junction
           resolvase protein [Ralstonia solanacearum MolK2]
 gi|206588830|emb|CAQ35792.1| atpase related to the helicase subunit of the holliday junction
           resolvase protein [Ralstonia solanacearum MolK2]
          Length = 436

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 71/328 (21%), Positives = 116/328 (35%), Gaps = 48/328 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP +++E  GQ       K     A A  E    ++  GPPG+GKTTLA+++A 
Sbjct: 2   PLAERLRPHSVDEVIGQRHLLGPGKPL-RVAFASGEP-HSMILWGPPGVGKTTLARLMAD 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130
                F + S  V++   D+   +   E       R ++F+DE+HR +   ++   P +E
Sbjct: 60  AFDAEFIALSA-VLSGVKDIREAVERAEQFRAHGRRTLVFVDEVHRFNKSQQDAFLPHVE 118

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
                 +    E PS       LSR  +    +                        ++L
Sbjct: 119 SGLFTFIGATTENPSFEVNGALLSRAAVYVLKS---------------------LSDDEL 157

Query: 189 KTIVQRGAKLT-GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           K + +R  +   GL     A   +   + G  R     L  V   A             D
Sbjct: 158 KQLAERARQELGGLEWVPAALDAVVASADGDGRKLLNNLEIVTRAARAQAEGDAVP-TID 216

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
            ALL  A+ +             + R   GG    + ISA     R +  D    +  + 
Sbjct: 217 VALLASALSEN------------LRRFDKGGDAFYDQISALHKSVRGSDPDAALYWFCRM 264

Query: 308 GFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                 PR   R ++ +AW+ +G+  P 
Sbjct: 265 LDGGADPRYLARRIVRMAWEDIGLADPR 292


>gi|319638052|ref|ZP_07992816.1| hypothetical protein HMPREF0604_00439 [Neisseria mucosa C102]
 gi|317400697|gb|EFV81354.1| hypothetical protein HMPREF0604_00439 [Neisseria mucosa C102]
          Length = 435

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 68/331 (20%), Positives = 109/331 (32%), Gaps = 48/331 (14%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
             E      LRP +L++  GQ       K    A +        +L  GPPG+GKTTLA+
Sbjct: 8   QPEAPLAERLRPHSLDDVIGQQHLIGEGKPLRVAVE--GGKPHSMLLWGPPGVGKTTLAR 65

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILY 126
           ++A+     F   S  V +   D+   +   E         +LF+DE+HR +   ++   
Sbjct: 66  ILAQSFNAQFLPVSA-VFSGVKDIREAIEKAEIALQQGQATILFVDEVHRFNKAQQDAFL 124

Query: 127 PAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           P +E   L  +    E PS       LSR  +    +        L  +         + 
Sbjct: 125 PYVESGLLTFIGATTENPSFEVNPALLSRAQVYVLQSLSSDDLKKLIAKVLALPEYQDFT 184

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           IE         A+   +   D  A  +                     A+    KT+T E
Sbjct: 185 IEA-------DAQELLVNTADGDARRLLNLLEQL-----------LRAADTRRLKTLTAE 226

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
               +L                    I R   GG      ISA     R +  +    + 
Sbjct: 227 FLADSLGAQ-----------------IRRFDKGGESFYNQISALHKSVRGSHPNAALYWF 269

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +       PR   R ++ +AW+ +G+  P 
Sbjct: 270 CRMLDGGTDPRYLARRIVRMAWEDIGLADPR 300


>gi|153809776|ref|ZP_01962444.1| hypothetical protein RUMOBE_00157 [Ruminococcus obeum ATCC 29174]
 gi|149833954|gb|EDM89034.1| hypothetical protein RUMOBE_00157 [Ruminococcus obeum ATCC 29174]
          Length = 427

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 81/343 (23%), Positives = 127/343 (37%), Gaps = 44/343 (12%)

Query: 2   MDREGLL-SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD      S+ + +E    S LRP TL+E  GQ       K+   A KA  + L  V+F 
Sbjct: 1   MDLFEYAKSKTLDRESPLASRLRPTTLDEVVGQEHIVGKDKLLYRAIKA--DKLTSVIFY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDE 113
           GPPG GKTTLA+V+A     +F   +  V A   D+  ++   +DR        +LFIDE
Sbjct: 59  GPPGTGKTTLAKVIANTTSASFTQINATV-AGKKDMEEVVKEAQDRLGMYGKKTILFIDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++ L P +ED  + L+    E P        LSR                  
Sbjct: 118 IHRFNKGQQDYLLPFVEDGTIILIGATTENPYFEVNGALLSR------------------ 159

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
               I   L     E+++T++ R        + +  A            +AG   R   +
Sbjct: 160 ---SIIFELKPLSNENIRTLILRAVNDCDKGMGNYGAVIDDDALEFLADMAGGDARSALN 216

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
             E+    T   E             +  D         + +    G    + ISA +  
Sbjct: 217 AVELGILTTPKSE--------DGSIHLTLDVASECIQKRVIKYDKKGDNHYDIISAFIKS 268

Query: 292 PRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
            R +  D    Y+ +  +     +   R +M +A + +G   P
Sbjct: 269 MRGSDPDAAVYYLAKMLYAGEDVKFIARRIMILASEDIGNADP 311


>gi|323704141|ref|ZP_08115720.1| AAA ATPase central domain protein [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323536207|gb|EGB25979.1| AAA ATPase central domain protein [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 442

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 85/348 (24%), Positives = 135/348 (38%), Gaps = 52/348 (14%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD       N  + +A ++  +RP TL+EF GQ     + K+   A KA  + +  ++F 
Sbjct: 1   MDMFQFAQDNFRKSNAPLADRMRPTTLDEFVGQKHILGHDKLLYRAIKA--DKVRSLIFY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTN-------LEDRDVLFIDE 113
           GPPG GKTTLA ++A     +F   +  V +   D+  ++            R +LF+DE
Sbjct: 59  GPPGTGKTTLANIIANTTKSSFEKLNA-VTSGVTDIKKIVNESKDRLSMYGKRTILFVDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++ L P +ED  + L+    E P    ++  +SR  +            PL 
Sbjct: 118 IHRFNKSQQDALLPYVEDGTIILIGATTENPYFEVIRPLVSRSMIFELY--------PLS 169

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
           D     I L     E      +RG     + VTD+A   I   S G  R A   +     
Sbjct: 170 DDDIREIVLRALNDE------KRGLGNEKIKVTDDALNHIIAYSDGDARTALNAIELAFL 223

Query: 232 FAEVAHAKT--ITREIADAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISA 287
             E        I  E+A   + R     DK G +  D                   TISA
Sbjct: 224 TTERDENGVINIDIEVAQECIQRKVLKYDKNGDNHYD-------------------TISA 264

Query: 288 GLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +   R +  D    ++ +  +    P    R ++  A + +G   P+
Sbjct: 265 FIKSMRGSDPDAALYWLAKMIYAGEDPMFIARRIVICAAEDVGNADPN 312


>gi|307265951|ref|ZP_07547499.1| AAA ATPase central domain protein [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306919015|gb|EFN49241.1| AAA ATPase central domain protein [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 443

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 74/341 (21%), Positives = 136/341 (39%), Gaps = 49/341 (14%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            +    V +       +RP+TL+EF GQ       K+  E  +   + +  ++  GPPG+
Sbjct: 7   SIFDNEVKKNKPLADRMRPKTLDEFVGQEHLLGKGKLLRELIEK--DNITSMILWGPPGV 64

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSI 119
           GKTTLA ++A      F + S  V++   ++  ++   E       R V+FIDEIHR + 
Sbjct: 65  GKTTLAMIIANMTNSKFITFSA-VLSGIKEIKEIMAKAELDAMYGTRTVVFIDEIHRFNK 123

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             ++   P +E   + L+    E PS       LSR  +         +  PL +   + 
Sbjct: 124 AQQDAFLPHVEKGNIILIGATTENPSFEVNSALLSRSKV--------FVMKPLTEEDLLV 175

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV-A 236
           +      ++      +RG  +  + ++ +   +IA+ + G  R+A   L      AEV  
Sbjct: 176 L------LKRALRDKERGLGMYDIEISGDQLKKIALFANGDARVALNTLEIAVMAAEVIE 229

Query: 237 HAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRD 294
             + +T +I   A+ +     DK G +  +L                   ISA     R+
Sbjct: 230 GKRIVTDDILADAMQKKTLLYDKEGEEHYNL-------------------ISAFHKSLRN 270

Query: 295 AIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +  D    ++ +       P    R ++  A + +G+  P 
Sbjct: 271 SDWDAAVYWLARMLEAGEDPLYVARRMIRFASEDIGLADPQ 311


>gi|270159557|ref|ZP_06188213.1| conserved hypothetical protein [Legionella longbeachae D-4968]
 gi|289165647|ref|YP_003455785.1| recombination protein [Legionella longbeachae NSW150]
 gi|269987896|gb|EEZ94151.1| conserved hypothetical protein [Legionella longbeachae D-4968]
 gi|288858820|emb|CBJ12734.1| recombination protein [Legionella longbeachae NSW150]
          Length = 431

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 69/335 (20%), Positives = 120/335 (35%), Gaps = 53/335 (15%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
            V  +     LLRP+ L E  GQ       K          +    ++  GPPG+GKTT+
Sbjct: 5   QVEPKPPLAELLRPKNLNEVIGQGHLLGEGKSL--KLCFAGKKPHSMILWGPPGVGKTTI 62

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEI 124
           A+V A      + + S  V +   D+ A +   ++        +LFIDEIHR +   ++ 
Sbjct: 63  ARVAAETFDCEWIALSA-VFSGVKDIRAAIEKAQENLIYGKHTLLFIDEIHRFNKAQQDA 121

Query: 125 LYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           L P  E   +  +    E PS       LSR  +                          
Sbjct: 122 LLPYTESGLVTFIGATTENPSFEVNSALLSRAQVYVL---------------------EP 160

Query: 183 YEIEDLKTIVQRG--AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
              ++L+ + Q+   A L+ L   +EA   I   + G  R     L +++      + + 
Sbjct: 161 LSEDELRQLFQKAHQAVLSHLQFDEEAIEMIIEFADGDARRLLNTLEQLQTACTAMNNEH 220

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +T++    +L +                    R   GG    + ISA     R +  D  
Sbjct: 221 VTKDFVINSLAKNP-----------------RRFDNGGENFYDQISALHKSVRGSHPDAA 263

Query: 301 EPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
             ++ +       P    R ++ +AW+ +G+  P 
Sbjct: 264 LYWLCRMLDGGVDPLYLARRILRMAWEDIGLADPR 298


>gi|296133419|ref|YP_003640666.1| AAA ATPase central domain protein [Thermincola sp. JR]
 gi|296031997|gb|ADG82765.1| AAA ATPase central domain protein [Thermincola potens JR]
          Length = 445

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 86/348 (24%), Positives = 139/348 (39%), Gaps = 52/348 (14%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD   L  +N  +++A ++  +RPRTL+EF GQ +     K+   A +A  + L  V+F 
Sbjct: 1   MDLFELNRQNQLKKEAPLAVRMRPRTLDEFVGQEQIVGPGKLLRRAIEA--DQLSSVIFY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDE 113
           GPPG GKTTLA+V+A      F   +  V +   +L  ++ N +        R +LFIDE
Sbjct: 59  GPPGTGKTTLAKVIANTTKAFFVQVNA-VTSGVAELREVIQNAKERLGMYGQRTILFIDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++ L P +ED  + L+    E P         SR       +R+    +   
Sbjct: 118 IHRFNKSQQDALLPYVEDGTIILIGATTENPYFEVNAPLRSR-------SRIFKFESLSN 170

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR- 230
           D     +     + E        G     + +T+EA   +   S G  R A   L     
Sbjct: 171 DDIRKLLWRALQDKEA-------GLGNYKVDLTEEALEHLVDISSGDARTALNALELAVL 223

Query: 231 -DFAEVAHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISA 287
               +    + IT E+A+ ++ + A   DK G    D+                   ISA
Sbjct: 224 TTAPDEKGVRKITLEVAEESIQKRAVLYDKSGDYHYDV-------------------ISA 264

Query: 288 GLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +   R +  D    +  +        R   R L+  A + +G+  P 
Sbjct: 265 FIKSIRGSDPDAALYWYARMTHAGEDQRFIVRRLIVHASEDIGMADPQ 312


>gi|170698492|ref|ZP_02889563.1| AAA ATPase central domain protein [Burkholderia ambifaria IOP40-10]
 gi|170136576|gb|EDT04833.1| AAA ATPase central domain protein [Burkholderia ambifaria IOP40-10]
          Length = 436

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 75/334 (22%), Positives = 117/334 (35%), Gaps = 50/334 (14%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
            V         LRP+TL E  GQ       K    A +  +     ++  GPPG+GKTTL
Sbjct: 6   QVEPRRPLAEALRPKTLAEVIGQTHLLGEGKPLRLAFE--SGKPHSMILWGPPGVGKTTL 63

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEE 123
           A++ A      F + S  V+    D+   +   +D         +LF+DEIHR +   ++
Sbjct: 64  ARLTALAFDCEFIALSA-VLGGVKDIRESMEQAKDTLNRTGRHTILFVDEIHRFNKGQQD 122

Query: 124 ILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
            L P +E   +  +    E PS       LSR  +    +        L  R        
Sbjct: 123 ALLPFVESGLVTFIGATTENPSFEVNSALLSRAQVYVLQSLNDDEMRQLLKRAQEIA--- 179

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
                           L GLA  D+A   +   + G  R    LL + +  A  +   TI
Sbjct: 180 ----------------LDGLAFDDKAVDTLIGYADGDARRFLNLLEQAQTAASSSRITTI 223

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
             E   +A+   A                  R   GG    + ISA     R +  D   
Sbjct: 224 DAEFVSSAMTLNA-----------------RRFDKGGDNFYDQISALHKSVRGSSPDGAL 266

Query: 302 PYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +  +       P+   R ++ +AW+ +G+  P 
Sbjct: 267 YWFCRMIDGGADPKYLARRIVRMAWEDIGLADPR 300


>gi|75812394|ref|YP_320013.1| fused recombination factor protein RarA/unknown domain-containing
           protein [Anabaena variabilis ATCC 29413]
 gi|75705150|gb|ABA24824.1| Recombination protein MgsA [Anabaena variabilis ATCC 29413]
          Length = 739

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 74/344 (21%), Positives = 133/344 (38%), Gaps = 43/344 (12%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M   +  L   +  +    + +RPRTL+EF GQ       ++   A     + L  ++F 
Sbjct: 1   MDIFDQNLINQIQTQAPLAARMRPRTLDEFVGQDHIIGPGRLLRRAI--SLDQLSSLIFY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDE 113
           GPPG GKTTLA+V+A     +F + +  V++   ++ A +   +        R +LF+DE
Sbjct: 59  GPPGTGKTTLARVIANTTRAHFLAINA-VLSGVKEIRAAIDTAQEQRKFHNQRTILFVDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           +HR +   ++ L P +E+  + L+    E P     K  +SR  +             L 
Sbjct: 118 VHRFNKSQQDALLPWVENGTVILIGATTENPYFEVNKALVSRSRIFQL--------KALN 169

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
           D     +       E      QRG     + + DEA   +   + G  R     L    +
Sbjct: 170 DEDLYKVVEQTLTDE------QRGYGCLKVKIDDEALKHLVNVANGDARSLLNALELAVE 223

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
                    +   +A A        +    Q  + Y          G V  +T+SA +  
Sbjct: 224 TTPPDETGVVHINLAVA--------EESIQQRAVLY-------DKEGDVHFDTVSAFIKS 268

Query: 292 PRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            R +  D    ++ +  +    PR   R ++ +A + +G+  P+
Sbjct: 269 LRGSDPDAALYWLAKMVYAGEDPRFIFRRMLILASEDVGLADPN 312


>gi|309791858|ref|ZP_07686343.1| AAA ATPase central domain protein [Oscillochloris trichoides DG6]
 gi|308226098|gb|EFO79841.1| AAA ATPase central domain protein [Oscillochloris trichoides DG6]
          Length = 486

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 84/340 (24%), Positives = 124/340 (36%), Gaps = 51/340 (15%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           S  +  +    + +RPRTLEE+ GQ       K+   A     + L  ++  GPPG GKT
Sbjct: 15  SAALQNQAPLATRMRPRTLEEYAGQQHVVGEGKLLRRAI--TGDQLFSIILWGPPGSGKT 72

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIV 121
           TLA++VA     +F   S  V A   DL A++   +D       R VLFIDEIHR +   
Sbjct: 73  TLARIVASSTNAHFTQVSA-VNAGVADLRAVIQEAQDRLGMYQQRTVLFIDEIHRFNKGQ 131

Query: 122 EEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           ++ + P +ED  + L+    E PS       LSR  +             L DR      
Sbjct: 132 QDAVLPYVEDGTIILIGATTENPSFEVNSALLSRARVFTLQALSDAEIGQLVDR------ 185

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV--RDFAEVAH 237
                        +RG       +  +A   +   + G  R A   L          +  
Sbjct: 186 --------ALADAERGLATYQPMLATDARGYLINMANGDARTALNALEAAVLAKAPSLGD 237

Query: 238 AKTITREIADAALL--RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDA 295
            + IT +    AL       DK G    D                    ISA     RD+
Sbjct: 238 KRLITLDDIRDALQSRATRYDKHGELHYD-------------------AISALHKSVRDS 278

Query: 296 IEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
             D    ++ +       P    R +M +A + +G+  PH
Sbjct: 279 DPDGALYWLARMLDGGEDPLYIARRIMRMAVEDIGLADPH 318


>gi|91775481|ref|YP_545237.1| recombination factor protein RarA [Methylobacillus flagellatus KT]
 gi|91709468|gb|ABE49396.1| Recombination protein MgsA [Methylobacillus flagellatus KT]
          Length = 440

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 72/339 (21%), Positives = 124/339 (36%), Gaps = 54/339 (15%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           L   ++ +      LRP++L+E  GQ       K    A    +  L  ++  GPPG+GK
Sbjct: 4   LFEPIAPQAPLAERLRPKSLDEVVGQRHLLGEGKPLRLA--FTSGKLPSMILWGPPGVGK 61

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSII 120
           TTLA+++A      F   S  V+A   D+   +   E        R +LF+DE+HR +  
Sbjct: 62  TTLARLIANTADAEFIPLSA-VLAGIKDIREAVERAEHTLQQSGRRTILFVDEVHRFNKG 120

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++   P +E   +  +    E PS       LSR                         
Sbjct: 121 QQDAFLPFVESGLITFIGATTENPSFEVNSALLSR---------------------AQVF 159

Query: 179 RLNFYEIEDLKTIVQRGAK--LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
            LN    ++LK +++RG +     + +T E   ++   + G  R     +  + + A  A
Sbjct: 160 VLNALSEDELKQLLERGKQEMQLDIPLTPEVVEQVLGYADGDARRLLNFVEGLFNAALTA 219

Query: 237 HAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAI 296
               I  E   + +                    + R   GG    + ISA     R + 
Sbjct: 220 GVTKIDAEFLQSTMASK-----------------LRRFDKGGEAFYDQISALHKSVRGSN 262

Query: 297 EDLIEPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
            D    + ++       P   GR ++ +A + +GI  P 
Sbjct: 263 PDAALYWFLRMLDGGADPLYLGRRIVRMAVEDIGIADPR 301


>gi|115350891|ref|YP_772730.1| recombination factor protein RarA [Burkholderia ambifaria AMMD]
 gi|115280879|gb|ABI86396.1| Recombination protein MgsA [Burkholderia ambifaria AMMD]
          Length = 436

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 72/336 (21%), Positives = 124/336 (36%), Gaps = 54/336 (16%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
            V         LRP+TL E  GQ       K    A +  +     ++  GPPG+GKTTL
Sbjct: 6   QVEPRRPLAEALRPKTLAEVIGQTHLLGEGKPLRLAFE--SGKPHSMILWGPPGVGKTTL 63

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEE 123
           A++ A      F + S  V+    D+   +   +D         +LF+DEIHR +   ++
Sbjct: 64  ARLTALAFDCEFIALSA-VLGGVKDIRESMEQAKDTLNRTGRHTILFVDEIHRFNKGQQD 122

Query: 124 ILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
            L P +E   +  +    E PS       LSR  +    +                    
Sbjct: 123 ALLPFVESGLVTFIGATTENPSFEVNSALLSRAQVYVLQS-------------------- 162

Query: 182 FYEIEDLKTIVQRGAKL--TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
               ++++ +++R  ++   GLA  D+A   +   + G  R    LL + +  A  +   
Sbjct: 163 -LSDDEMRQLLKRAQEIALDGLAFDDKAVDTLIGYADGDARRFLNLLEQAQTAAASSRIT 221

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           TI  +   +A+   A                  R   GG    + ISA     R +  D 
Sbjct: 222 TIDADFVSSAMTLNA-----------------RRFDKGGDNFYDQISALHKSVRGSSPDG 264

Query: 300 IEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
              +  +       P+   R ++ +AW+ +G+  P 
Sbjct: 265 ALYWFCRMIDGGADPKYLARRIVRMAWEDIGLADPR 300


>gi|172059904|ref|YP_001807556.1| recombination factor protein RarA [Burkholderia ambifaria MC40-6]
 gi|171992421|gb|ACB63340.1| AAA ATPase central domain protein [Burkholderia ambifaria MC40-6]
          Length = 436

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 74/334 (22%), Positives = 117/334 (35%), Gaps = 50/334 (14%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
            V         LRP+TL E  GQ       K    A +  +     ++  GPPG+GKTTL
Sbjct: 6   QVEPRRPLAEALRPKTLAEVIGQTHLLGEGKPLRLAFE--SGKPHSMILWGPPGVGKTTL 63

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEE 123
           A++ A      F + S  V+    D+   +   +D         +LF+DEIHR +   ++
Sbjct: 64  ARLTALAFDCEFIALSA-VLGGVKDIRESMEQAKDTLNRTGRHTILFVDEIHRFNKGQQD 122

Query: 124 ILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
            L P +E   +  +    E PS       LSR  +    +        L  R        
Sbjct: 123 ALLPFVESGLVTFIGATTENPSFEVNSALLSRAQVYVLQSLNDDEMRQLLKRAQEIA--- 179

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
                           L GLA  D+A   +   + G  R    LL + +  A  +   TI
Sbjct: 180 ----------------LDGLAFDDKAVDTLIGYADGDARRFLNLLEQAQTAAASSRITTI 223

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
             +   +A+   A                  R   GG    + ISA     R +  D   
Sbjct: 224 DADFVSSAMTLNA-----------------RRFDKGGDNFYDQISALHKSVRGSSPDGAL 266

Query: 302 PYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +  +       P+   R ++ +AW+ +G+  P 
Sbjct: 267 YWFCRMIDGGADPKYLARRIVRMAWEDIGLADPR 300


>gi|73542280|ref|YP_296800.1| recombination factor protein RarA [Ralstonia eutropha JMP134]
 gi|72119693|gb|AAZ61956.1| Recombination protein MgsA [Ralstonia eutropha JMP134]
          Length = 446

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 73/340 (21%), Positives = 123/340 (36%), Gaps = 51/340 (15%)

Query: 5   EGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           + L S +  +    +   LRPR ++E  GQ       K    A ++       ++  GPP
Sbjct: 3   DTLFSDSPDRSRQPLAERLRPRNIDEVIGQQHLLGAGKPLRVAFESGE--PHSMILWGPP 60

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
           G+GKTTLA+++A      F + S  +     I +A D A        R ++F+DE+HR +
Sbjct: 61  GVGKTTLARLMADAFDAEFIALSAVLSGVKDIREAVDRAEQFRAHGRRTLVFVDEVHRFN 120

Query: 119 IIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
              ++   P +E      +    E PS       LSR  +    +               
Sbjct: 121 KSQQDAFLPHVESGLFTFIGATTENPSFEVNGALLSRAAVYVLKS--------------- 165

Query: 177 PIRLNFYEIEDLKTIVQRGAKLT-GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
                  +  +L  + QR ++   G+   +EA   I   + G  R     +  V   A  
Sbjct: 166 ------LDDAELTQLAQRASEELGGITWQEEALKLIVASADGDGRKLLNNIEIVVRAARN 219

Query: 236 AHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDA 295
           A A  I   +  +AL                    + R   GG    + ISA     R +
Sbjct: 220 AGATEIDTALLGSALSEN-----------------LRRFDKGGDAFYDQISALHKSVRGS 262

Query: 296 IEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
             D    +  +       PR   R ++ +AW+ +G+  P 
Sbjct: 263 DPDAALYWFCRMIDGGADPRYLARRIVRMAWEDIGLADPR 302


>gi|170691962|ref|ZP_02883126.1| AAA ATPase central domain protein [Burkholderia graminis C4D1M]
 gi|170143246|gb|EDT11410.1| AAA ATPase central domain protein [Burkholderia graminis C4D1M]
          Length = 480

 Score =  169 bits (429), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 70/340 (20%), Positives = 122/340 (35%), Gaps = 52/340 (15%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           + ++             LRPR ++E  GQ       K     A    EA   ++  GPPG
Sbjct: 41  QNVMFEETRANVPLAERLRPRNIDEVIGQKHLLGPNKPL-RVAFESGEA-HSMILWGPPG 98

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLS 118
           +GKTTLA+++A      F + S  V++   D+   +   +       + ++F+DE+HR +
Sbjct: 99  VGKTTLARLMADAFHAQFIALSA-VLSGVKDIREAVETAQIHRANGHQTLVFVDEVHRFN 157

Query: 119 IIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
              ++   P +E      +    E PS       LSR  +    +               
Sbjct: 158 KSQQDAFLPHVESGLFVFVGATTENPSFEVNSALLSRAAVYVLKS--------------- 202

Query: 177 PIRLNFYEIEDLKTIVQRGAKLT-GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
                  + ++L+ +++R  +   GL  TDEA   +   + G  R     L  V   A  
Sbjct: 203 ------LDEDELRELLERAQRELGGLTFTDEARDALIGSADGDGRKLLNNLEIVARAAAQ 256

Query: 236 AHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDA 295
                I   +  +AL                    + R   GG    + ISA     R +
Sbjct: 257 QKTTEIDGALLGSALAEN-----------------LRRFDKGGDAFYDQISALHKSVRGS 299

Query: 296 IEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
             D    +  +       PR   R ++ +AW+ +G+  P 
Sbjct: 300 SPDGALYWFCRMLDGGADPRYLARRIVRMAWEDIGLADPR 339


>gi|119897658|ref|YP_932871.1| recombination factor protein RarA [Azoarcus sp. BH72]
 gi|119670071|emb|CAL93984.1| conserved hypothetical protein [Azoarcus sp. BH72]
          Length = 445

 Score =  169 bits (429), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 71/337 (21%), Positives = 117/337 (34%), Gaps = 49/337 (14%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L      Q       +RP TL+E  GQ       K    A    +     ++  GPPG+G
Sbjct: 4   LFDSVEPQRVPLAERMRPGTLDEVAGQAHLLGPGKPLRLA--FASGKPHSMILWGPPGVG 61

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSII 120
           KTTLA+++A+     F + S  V +   D+   +   +         +LF+DE+HR +  
Sbjct: 62  KTTLARLMAKGFDAEFVALSA-VFSGVKDIREAIVQAQAAKARGRHTILFVDEVHRFNKA 120

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++   P +E   +  +    E PS       LSR  +             L +R     
Sbjct: 121 QQDAFLPYVEQGLVTFIGATTENPSFEVNSALLSRAAVYVLEPLDTEAMQGLFER----- 175

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
                          R      L   + A   +   + G  R    L+ +++  AE A  
Sbjct: 176 --------------ARSLACPDLVFEEAARERMIGFADGDARRLMNLIEQIQVAAETAGV 221

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             +T +  D AL R                  + R   GG    + ISA     R +  D
Sbjct: 222 APVTADFVDEALSRD-----------------LRRFDKGGEAFYDQISALHKSVRGSNPD 264

Query: 299 LIEPYMIQQ--GFIQRTPRGRLLMPIAWQHLGIDIPH 333
               ++ +   G       GR L+ +A + +G+  P 
Sbjct: 265 AALYWLCRMLDGGADAHYLGRRLVRMAVEDIGLADPR 301


>gi|52841991|ref|YP_095790.1| recombination factor protein RarA [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|148359308|ref|YP_001250515.1| chromosome architecture ATPase [Legionella pneumophila str. Corby]
 gi|296107355|ref|YP_003619055.1| ATPase associated with chromosome architecture [Legionella
           pneumophila 2300/99 Alcoy]
 gi|52629102|gb|AAU27843.1| ATPase associated with chromosome architecture [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|148281081|gb|ABQ55169.1| ATPase associated with chromosome architecture [Legionella
           pneumophila str. Corby]
 gi|295649256|gb|ADG25103.1| ATPase associated with chromosome architecture [Legionella
           pneumophila 2300/99 Alcoy]
 gi|307610463|emb|CBX00034.1| hypothetical protein LPW_17901 [Legionella pneumophila 130b]
          Length = 434

 Score =  169 bits (429), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 65/333 (19%), Positives = 114/333 (34%), Gaps = 49/333 (14%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           N   +      LRP+ ++E  GQ       K            L  ++  GPPG+GKTT+
Sbjct: 5   NKEPDPPLAESLRPQHIDEVIGQSHLLGEGKPLR--LCFMGSKLHSMILWGPPGVGKTTI 62

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEI 124
           A++ A+     + + S  V +   D+ A +   ++      + +LFIDEIHR +   ++ 
Sbjct: 63  ARLTAQAFDCEWIALSA-VFSGVKDIRAAVEKAQEYLIHDKQTILFIDEIHRFNKAQQDA 121

Query: 125 LYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           L P  E   +  +    E PS       LSR  +             L  R         
Sbjct: 122 LLPYTESGLITFIGATTENPSFEVNSALLSRAQVYVLKPLSEQELKLLFLR--------- 172

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
                     QR         T+EA   +   + G  R    LL + +          + 
Sbjct: 173 --------AHQRALSSLQ--FTEEAVDFLISCADGDARRLLNLLEQTKTACLTIKTAVVD 222

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            E+    +++ +                  R   GG    + ISA     R +  D    
Sbjct: 223 VELLHNVIVQNS-----------------RRFDKGGEAFYDQISALHKSVRGSNPDAALY 265

Query: 303 YMIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
           ++ +       P    R ++ ++W+ +G+  P 
Sbjct: 266 WLCRMLDGGVDPYYLARRIIRMSWEDIGLADPK 298


>gi|308389351|gb|ADO31671.1| recombination factor protein RarA [Neisseria meningitidis alpha710]
 gi|325130297|gb|EGC53064.1| magnesium chelatase, subunit ChlI family [Neisseria meningitidis
           OX99.30304]
 gi|325136258|gb|EGC58866.1| magnesium chelatase, subunit ChlI family [Neisseria meningitidis
           M0579]
 gi|325202050|gb|ADY97504.1| magnesium chelatase, subunit ChlI family [Neisseria meningitidis
           M01-240149]
 gi|325208196|gb|ADZ03648.1| magnesium chelatase, subunit ChlI family [Neisseria meningitidis
           NZ-05/33]
          Length = 436

 Score =  169 bits (429), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 75/333 (22%), Positives = 117/333 (35%), Gaps = 49/333 (14%)

Query: 12  VSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
             + DA +   LRP TL++  GQ       K    A +        +L  GPPG+GKTTL
Sbjct: 6   AREPDAPLAERLRPHTLDDVVGQEHLIGEGKSLRVAVE--GGKPHSMLLWGPPGVGKTTL 63

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEI 124
           A+++A+     F   S  V +   D+   +   E         +LF+DE+HR +   ++ 
Sbjct: 64  ARILAQSFNAQFLPVSA-VFSGVKDIRGAIDKAEIALQQGRATILFVDEVHRFNKAQQDA 122

Query: 125 LYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             P +E+  L  +    E PS       LSR  +    +        L  +         
Sbjct: 123 FLPYVENGLLTFIGATTENPSFEVNPALLSRAQVYVLQSLSSDDLKKLIAKVLALPEYQE 182

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           + IE         A+   +   D  A           R    LL ++   AE    KT+T
Sbjct: 183 FTIET-------DAQKLLVNTADGDA-----------RRLLNLLEQLLGAAETRRLKTLT 224

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            E    +L                    I R   GG      ISA     R +  +    
Sbjct: 225 AEFLADSLGAQ-----------------IRRFDKGGESFYNQISALHKSVRGSHPNAALY 267

Query: 303 YMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +  +       PR   R ++ IAW+ +G+  P 
Sbjct: 268 WFCRMLDGGTDPRYLARRIVRIAWEDIGLADPR 300


>gi|54297677|ref|YP_124046.1| recombination factor protein RarA [Legionella pneumophila str.
           Paris]
 gi|53751462|emb|CAH12880.1| hypothetical protein lpp1728 [Legionella pneumophila str. Paris]
          Length = 434

 Score =  169 bits (429), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 65/333 (19%), Positives = 113/333 (33%), Gaps = 49/333 (14%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           N   +      LRP+ ++E  GQ       K            L  ++  GPPG+GKTT+
Sbjct: 5   NKEPDPPLAESLRPKHIDEVIGQSHLLGEGKPLR--LCFMGSKLHSMILWGPPGVGKTTI 62

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEI 124
           A++ A+     + + S  V +   D+ A +   ++      + +LFIDEIHR +   ++ 
Sbjct: 63  ARLTAQAFDCEWIALSA-VFSGVKDIRAAIEKAQEYLIHDKQTILFIDEIHRFNKAQQDA 121

Query: 125 LYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           L P  E   +  +    E PS       LSR  +             L  R         
Sbjct: 122 LLPYTESGLITFIGATTENPSFEVNPALLSRAQVYVLKLLSEQELKLLFLR--------- 172

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
                     QR         T+EA   +   + G  R    LL + +          + 
Sbjct: 173 --------AHQRALSSLQ--FTEEAMDFLISCADGDARRLLNLLEQTKTACLTIKTAVVD 222

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            E+    +++                    R   GG    + ISA     R +  D    
Sbjct: 223 VELLHNMIVQSG-----------------RRFDKGGEAFYDQISALHKSVRGSNPDAALY 265

Query: 303 YMIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
           ++ +       P    R ++ ++W+ +G+  P 
Sbjct: 266 WLCRMLDGGVDPYYLARRIIRMSWEDIGLADPK 298


>gi|134094254|ref|YP_001099329.1| recombination factor protein RarA [Herminiimonas arsenicoxydans]
 gi|133738157|emb|CAL61202.1| ATPase, AAA family protein [Herminiimonas arsenicoxydans]
          Length = 430

 Score =  169 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 66/328 (20%), Positives = 115/328 (35%), Gaps = 50/328 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP TL+E  GQ       K    A ++       ++  GPPG+GKTTLA+++A 
Sbjct: 5   PLAERLRPHTLDEVIGQQHILGAGKPLRVAFESGE--PHSMILWGPPGVGKTTLARLMAD 62

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAM 129
               +F + S  V++   D+   +   +        R +LF+DE+HR +   ++   P +
Sbjct: 63  SFNADFIALSA-VLSGVKDIRDAVERAQLSRGAMDRRTILFVDEVHRFNKSQQDAFLPHV 121

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E      +    E PS       LSR  +    +        + DR              
Sbjct: 122 ESGLFTFIGATTENPSFEVNGALLSRAAVYVLKSLDENDLAAMLDRAC------------ 169

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
                    +L  ++ T +A   +   + G  R     L  V   A+      +  E+  
Sbjct: 170 -------ANELGDISFTPDAKATLIASADGDGRKLLNNLEIVARAAQANQRTEVDAELLK 222

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
             L                    + R   GG    + ISA     R +  D    ++ + 
Sbjct: 223 TCLG-----------------DALRRFDKGGDSFYDQISALHKSVRGSNPDAALYWLTRM 265

Query: 308 GFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                 P+   R ++ +AW+ +G+  P 
Sbjct: 266 LDGGADPKYLSRRIVRMAWEDIGLADPR 293


>gi|149377437|ref|ZP_01895180.1| putative ATPase associated with chromosome architecture
           [Marinobacter algicola DG893]
 gi|149358278|gb|EDM46757.1| putative ATPase associated with chromosome architecture
           [Marinobacter algicola DG893]
          Length = 447

 Score =  169 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 75/328 (22%), Positives = 120/328 (36%), Gaps = 45/328 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP +L+E+ GQ       K    A +     L  ++  GPPG+GKTT A+++A 
Sbjct: 14  PLAARMRPASLDEYVGQSHLVGEGKPLRRAVEQGQ--LHSMILWGPPGVGKTTFARLLAN 71

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAM 129
              ++F + S  V++   D+  ++   ++R        +LF+DE+HR +   ++   P +
Sbjct: 72  LSDLSFETVSA-VLSGVKDIRLIVERAKERKRSEGRDTLLFVDEVHRFNKSQQDAFLPHI 130

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ED     +    E PS       LSR       TRV +L N  +      +  +    E 
Sbjct: 131 EDGTFIFVGATTENPSFELNSALLSR-------TRVYVLKNLEETDILELLERSLSAPEG 183

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           L              V       +A  S G  R A  +L    D AE             
Sbjct: 184 LAG---------RFTVEKSVLELMATASGGDARRALNILEVATDLAEPDEDGAARITS-- 232

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
                        D L+    T + R   GG V  + ISA     R +  D    ++ + 
Sbjct: 233 -------------DHLEQVLQTSLRRFDKGGDVFYDQISALHKSVRGSDPDGSLYWLCRM 279

Query: 308 GFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                 P    R L  IA + +G   P 
Sbjct: 280 LDGGCDPLYVARRLARIASEDIGNADPR 307


>gi|332981519|ref|YP_004462960.1| AAA ATPase central domain-containing protein [Mahella australiensis
           50-1 BON]
 gi|332699197|gb|AEE96138.1| AAA ATPase central domain protein [Mahella australiensis 50-1 BON]
          Length = 444

 Score =  169 bits (428), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 81/336 (24%), Positives = 132/336 (39%), Gaps = 43/336 (12%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           ++ + +E      +RPRTLEEF GQ    +  ++   A KA  + L  V+F GPPG GKT
Sbjct: 9   NKQLKKEAPLAERMRPRTLEEFVGQEHIIAPGRMLYRAIKA--DRLSSVIFYGPPGTGKT 66

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIV 121
           TLA+V+A     +F   S  V A   D+  L+   +        R +LFIDEIHR +   
Sbjct: 67  TLARVIANTTKSHFEQLSA-VTAGVADVRRLIDEAKQRLGMYGQRTILFIDEIHRFNKAQ 125

Query: 122 EEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           ++ L P +E   + L+    E P        LSR T+            PL+++      
Sbjct: 126 QDALLPHVEAGTIILIGATTENPYFEVNSALLSRSTVFELY--------PLKEK------ 171

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
                   LK I++R        + + A             +A    R V +  E+A   
Sbjct: 172 -------HLKEILKRALADKDRGLGNYAIEITDDAIDHIVNMADGDARSVLNALEIAFLT 224

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           T   +     +     ++     +  R L    R    G    +TISA +   R +  + 
Sbjct: 225 TPPSDDGIIHIDLGVAEEC----IQRRAL----RYDKAGDNHYDTISAFIKSMRGSDPNA 276

Query: 300 IEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
              ++ +       P+   R ++  A + +G   P 
Sbjct: 277 AVYWLAKMINAGEDPKFIARRIVICASEDVGNADPQ 312


>gi|261364752|ref|ZP_05977635.1| replication-associated recombination protein A [Neisseria mucosa
           ATCC 25996]
 gi|288567056|gb|EFC88616.1| replication-associated recombination protein A [Neisseria mucosa
           ATCC 25996]
          Length = 437

 Score =  169 bits (428), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 68/331 (20%), Positives = 109/331 (32%), Gaps = 48/331 (14%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
             +      LRP TL++  GQ       K    A +        +L  GPPG+GKTTLA+
Sbjct: 8   QPDAPLAERLRPHTLDDVIGQQHLIGEGKPLRVAVE--GGKPHSMLLWGPPGVGKTTLAR 65

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILY 126
           ++A+     F   S  V +   D+   +   E         +LF+DE+HR +   ++   
Sbjct: 66  ILAQSFNAQFLPVSA-VFSGVKDIREAIDKAEIALQQGRATILFVDEVHRFNKAQQDAFL 124

Query: 127 PAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           P +E   L  +    E PS       LSR  +    +        L  +         + 
Sbjct: 125 PHVESGLLTFIGATTENPSFEVNPALLSRAQVYVLQSLSSDDLKKLIAKVLALPEYRDFT 184

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           IE         A+   +   D  A  +                     A+    KT+T E
Sbjct: 185 IEA-------DAQELLVNTADGDARRLLNLLEQL-----------LRAADTRRLKTLTAE 226

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
               +L                    I R   GG      ISA     R +  +    + 
Sbjct: 227 FLADSLGAQ-----------------IRRFDKGGESFYNQISALHKSVRGSHPNAALYWF 269

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +       PR   R ++ +AW+ +G+  P 
Sbjct: 270 CRMLDGGTDPRYLARRIVRMAWEDIGLADPR 300


>gi|325273411|ref|ZP_08139666.1| recombination factor protein RarA [Pseudomonas sp. TJI-51]
 gi|324101456|gb|EGB99047.1| recombination factor protein RarA [Pseudomonas sp. TJI-51]
          Length = 441

 Score =  169 bits (428), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 83/343 (24%), Positives = 124/343 (36%), Gaps = 52/343 (15%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD     S  V+Q     + LRP  L+E+ GQ    +  K   EA +    AL  ++F G
Sbjct: 1   MDLFR--SEPVAQ--PLAARLRPSNLDEYVGQEHLLARGKPLREALEQ--GALHSMIFWG 54

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLT-------NLEDRDVLFIDEI 114
           PPG+GKTTLA+++A+    +F + S  V+A   ++   +            R +LF+DE+
Sbjct: 55  PPGVGKTTLARLLAQFCDAHFETVSA-VLAGVKEIRQAVEVAKQQAGQYGRRTILFVDEV 113

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++   P +ED  L  +    E PS       LSR  +    +        L D
Sbjct: 114 HRFNKSQQDAFLPYVEDGTLLFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVD 173

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R                    RG     L V D+A   +   + G  R     L    D 
Sbjct: 174 RALTE---------------DRGLGKRNLRVGDDAFKMLMAAADGDGRRMLNFLENASDL 218

Query: 233 AEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEP 292
           AE         EI    L  L  D                R   GG    + ISA     
Sbjct: 219 AE------DGSEIDVEMLQSLLGDSR-------------RRFDKGGEAFYDQISALHKSV 259

Query: 293 RDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           R +  D    +  +       P    R ++ +A + +G   P 
Sbjct: 260 RGSNPDGALYWFARMLDGGCDPLYIARRVVRMASEDIGNADPR 302


>gi|148657906|ref|YP_001278111.1| recombination factor protein RarA [Roseiflexus sp. RS-1]
 gi|148570016|gb|ABQ92161.1| AAA ATPase, central domain protein [Roseiflexus sp. RS-1]
          Length = 505

 Score =  169 bits (428), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 83/337 (24%), Positives = 131/337 (38%), Gaps = 47/337 (13%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
             ++++    + +RPRTL+EF GQ       KV   A     +AL  ++  GPPG GKTT
Sbjct: 15  EALNRQAPLAARMRPRTLDEFVGQDHIIGEGKVLRRAI--SNDALFSIILWGPPGSGKTT 72

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVE 122
           LA+++A     +F   S  V A   DL  ++   +D       R ++FIDEIHR +   +
Sbjct: 73  LARIIADTTNAHFEQLSA-VSAGVADLRRVVKEAQDRLGMFQQRTIVFIDEIHRFNKAQQ 131

Query: 123 EILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           + + P +ED  + L+    E PS        SR        RV +L     D+ G+ +  
Sbjct: 132 DAILPYVEDGTIILIGATTENPSFEVNPALRSR-------ARVFVLEALTDDQIGVIVDR 184

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF--AEVAHA 238
              + E       RG     + +  +A   +   S G  R A   L          V   
Sbjct: 185 ALSDTE-------RGLGELNVLLAADARGYLINMSNGDARTALNALEAAALAKPPGVGGK 237

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
           + IT E    AL   A                  R    G +  + ISA     RD+  D
Sbjct: 238 RLITVEDIRDALQSRA-----------------VRYDKNGELHYDAISALHKSVRDSDPD 280

Query: 299 LIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
               ++ +       P    R ++ +A + +G+  P 
Sbjct: 281 AALYWLGRMLDGGEDPLYIARRVVRMAIEDIGLADPQ 317


>gi|167039928|ref|YP_001662913.1| recombination factor protein RarA [Thermoanaerobacter sp. X514]
 gi|300915273|ref|ZP_07132587.1| AAA ATPase central domain protein [Thermoanaerobacter sp. X561]
 gi|307724748|ref|YP_003904499.1| AAA ATPase central domain-containing protein [Thermoanaerobacter
           sp. X513]
 gi|166854168|gb|ABY92577.1| AAA ATPase, central domain protein [Thermoanaerobacter sp. X514]
 gi|300888549|gb|EFK83697.1| AAA ATPase central domain protein [Thermoanaerobacter sp. X561]
 gi|307581809|gb|ADN55208.1| AAA ATPase central domain protein [Thermoanaerobacter sp. X513]
          Length = 443

 Score =  169 bits (428), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 77/341 (22%), Positives = 136/341 (39%), Gaps = 49/341 (14%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            +    V +       +RP+TL+EF GQ       K+  E  +   + +  ++  GPPG+
Sbjct: 7   SIFDNEVKKNKPLADRMRPKTLDEFVGQEHLLGKGKLLRELIEK--DNITSMILWGPPGV 64

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSI 119
           GKTTLA ++A      F + S  V++   ++  ++   E       R V+FIDEIHR + 
Sbjct: 65  GKTTLAMIIANMTNSKFVTFSA-VLSGIKEIKEIMAKAELDAMYGTRTVVFIDEIHRFNK 123

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             ++   P +E   + L+    E PS       LSR  +         +  PL +   + 
Sbjct: 124 AQQDAFLPHVEKGNIILIGATTENPSFEVNSALLSRSKV--------FVMKPLTEEDLLI 175

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV-A 236
           +     + E      Q G  +  + +TDE   +IA+ + G  R+A   L      A+V  
Sbjct: 176 LLKRALKDE------QNGFGMYKIGITDEQLKKIALFANGDARVALNTLEIAVMGAKVIE 229

Query: 237 HAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRD 294
             + +T +I   A+ +     DK G +  +L                   ISA     R+
Sbjct: 230 GERIVTDDILADAMQKKTLLYDKQGEEHYNL-------------------ISAFHKSLRN 270

Query: 295 AIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +  D    ++ +       P    R ++  A + +G+  P 
Sbjct: 271 SDWDAAVYWLARMLEAGEDPLYVARRMIRFASEDIGLADPQ 311


>gi|257094688|ref|YP_003168329.1| AAA ATPase central domain-containing protein [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257047212|gb|ACV36400.1| AAA ATPase central domain protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 439

 Score =  169 bits (428), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 74/330 (22%), Positives = 122/330 (36%), Gaps = 54/330 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRPRTL E  GQ    +  K    A   ++  L  ++  GPPG+GKTTLA+++A 
Sbjct: 14  PLAERLRPRTLAEVIGQTHLLAPGKPLATA--FQSGQLHSMILWGPPGVGKTTLARLMAD 71

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAM 129
               +F + S  V +   D+ A +   E        R +LF+DE+HR +   ++   P +
Sbjct: 72  AFDADFMALSA-VFSGVKDIRAAVARAETTRALSGRRTILFVDEVHRFNKAQQDAFLPYV 130

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E   L  +    E PS       LSR ++                        +     +
Sbjct: 131 EGGLLTFVGATTENPSFEVNSALLSRASVYVL---------------------HPLSATE 169

Query: 188 LKTIVQRGAKLT--GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           L  + +R  +L   GL    +A   +  ++ G  R    L+ +V   A      ++    
Sbjct: 170 LGQLFERACRLALPGLGFDADARARLIGQADGDARRLLNLVEQVGTAAATERVTSVDGAF 229

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
            D  L +                  + R   GG    + ISA     R +  D    +  
Sbjct: 230 VDQTLAQ-----------------SLRRFDKGGDAFYDQISALHKSVRGSSPDAALYWFC 272

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +       PR   R L+ +AW+ +G+  P 
Sbjct: 273 RMLDGGADPRYLARRLIRMAWEDIGLADPR 302


>gi|26990707|ref|NP_746132.1| recombination factor protein RarA [Pseudomonas putida KT2440]
 gi|24985700|gb|AAN69596.1|AE016593_4 ATPase, AAA family [Pseudomonas putida KT2440]
 gi|313498109|gb|ADR59475.1| Recombination factor protein RarA [Pseudomonas putida BIRD-1]
          Length = 441

 Score =  169 bits (428), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 82/343 (23%), Positives = 126/343 (36%), Gaps = 52/343 (15%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD     S  V+Q     + LRP +L+E+ GQ    +  K   EA +    AL  ++F G
Sbjct: 1   MDLFR--SEPVAQ--PLAARLRPSSLDEYVGQEHLLARGKPLREALEQ--GALHSMIFWG 54

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLT-------NLEDRDVLFIDEI 114
           PPG+GKTTLA+++A+    +F + S  V+A   ++   +            R +LF+DE+
Sbjct: 55  PPGVGKTTLARLLAQFCDAHFETVSA-VLAGVKEIRQAVEVAKQQAGQYGRRTILFVDEV 113

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++   P +ED  L  +    E PS       LSR  +    +        L +
Sbjct: 114 HRFNKSQQDAFLPYVEDGTLLFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVN 173

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R                   +RG     L V D+A   +   + G  R     L    D 
Sbjct: 174 RALTE---------------ERGLGKRNLRVGDDAFKMLMAAADGDGRRMLNFLENASDL 218

Query: 233 AEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEP 292
           AE         EI    L  L  D                R   GG    + ISA     
Sbjct: 219 AE------DGSEIDVEMLQSLLGDSR-------------RRFDKGGEAFYDQISALHKSV 259

Query: 293 RDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           R +  D    +  +       P    R ++ +A + +G   P 
Sbjct: 260 RGSNPDGALYWFARMLDGGCDPLYIARRVVRMASEDIGNADPR 302


>gi|312870086|ref|ZP_07730222.1| replication-associated recombination protein A [Lactobacillus oris
           PB013-T2-3]
 gi|311094389|gb|EFQ52697.1| replication-associated recombination protein A [Lactobacillus oris
           PB013-T2-3]
          Length = 441

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 75/346 (21%), Positives = 129/346 (37%), Gaps = 56/346 (16%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M +E L +++ S      + +RP TL EF GQ       +V  E  +   + L  ++F G
Sbjct: 1   MHQESLFAQSNSGATPLANRVRPSTLAEFVGQQHLIGPHRVLRELIE--NDQLSSLIFWG 58

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIH 115
           PPG+GKTTLA+++A++   +F + S  V +   D+  L+   E       R + FIDEIH
Sbjct: 59  PPGVGKTTLAEIIAQQTKAHFVTFSA-VTSSIKDIRKLMQEAEQNREYGERTICFIDEIH 117

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P +E   + L+    E PS       LSR  +    +            
Sbjct: 118 RFNKAQQDAFLPFVERGSIILIGATTENPSFEINSALLSRCKVFVLKS------------ 165

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAK------LTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
                        DL+ +++R            +    +A   IA  + G  R+A   L 
Sbjct: 166 ---------LTTADLEEVIKRALAHPAAFPQLEVDCQPDAIHLIAQFANGDARVALNTLE 216

Query: 228 RVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISA 287
                 +    K    E   + L  +    + +D+ D  +                 ISA
Sbjct: 217 MAVLNGKREGKKVTITEQDLSQL--INTKSLRYDKHDEEH--------------YNIISA 260

Query: 288 GLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
                R++  D    +  +       P    R L+  A + +G+  
Sbjct: 261 LHKSMRNSDVDAAVYWCSRMLDGGEDPLYIARRLVRFASEDIGLAD 306


>gi|307249662|ref|ZP_07531648.1| Replication-associated recombination protein A [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306858360|gb|EFM90430.1| Replication-associated recombination protein A [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
          Length = 446

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 83/341 (24%), Positives = 127/341 (37%), Gaps = 52/341 (15%)

Query: 8   LSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           LS + S++   + + +RPRTL E+ GQ       K    A +A       ++F GPPG G
Sbjct: 4   LSFDFSEDFRPLPARMRPRTLAEYIGQAHLIGEGKPLRRAIEAGHS--HSMIFWGPPGTG 61

Query: 67  KTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           KTTLA+++A          S        I +A + A L      R +LF+DE+HR +   
Sbjct: 62  KTTLAEIIAHHFDAEVERLSAVTSGVKEIREAIERAKLNRQTGRRTLLFVDEVHRFNKSQ 121

Query: 122 EEILYPAMEDFQLDLM--VGEGPSARSVKINLSR-----FTLIAATTRVGLLTNPLQDRF 174
           ++   P +ED  +  +    E PS       LSR        + A     +LTN L D+ 
Sbjct: 122 QDAFLPHIEDGTIIFIGATTENPSFELNNALLSRAKIYILKPLQAVEIAQVLTNALYDK- 180

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
                             +RG       + D     +A    G  R A   L  + D AE
Sbjct: 181 ------------------ERGLGNESYYIEDNVIELLADYVNGDARFALNCLELMSDMAE 222

Query: 235 VAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRD 294
           ++       +  + ALL   + +              AR   GG    + ISA     R 
Sbjct: 223 ISPQG----KHLNKALLAEVLGER------------QARFDKGGDRYYDLISALHKSVRG 266

Query: 295 AIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +  D    +  +       P    R L+ IA + +G   P 
Sbjct: 267 SSPDGALYWYARILTAGGDPLYVARRLLAIASEDIGNADPR 307


>gi|187479165|ref|YP_787190.1| recombination factor protein RarA [Bordetella avium 197N]
 gi|115423752|emb|CAJ50303.1| putative ATPase [Bordetella avium 197N]
          Length = 459

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 70/342 (20%), Positives = 118/342 (34%), Gaps = 48/342 (14%)

Query: 4   REGLLSRNVSQED--ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
              L S + +          LRPRTL +  GQ       K    A    +     ++F G
Sbjct: 18  SNDLFSADPAHRPYVPLAERLRPRTLADVVGQSHLLGPDKPLRVA--FDSGRPHSMIFWG 75

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIH 115
           PPG+GKTTLA+++A     +F + S  V+    D+   +T  +       R +LF+DE+H
Sbjct: 76  PPGVGKTTLARLMADGFDAHFIAISA-VLGGVKDIRDAVTAAQVAQGQGRRTILFVDEVH 134

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P +E      +    E PS       LSR  +    +        L DR
Sbjct: 135 RFNKAQQDAFLPYVESGLFTFIGATTENPSFEVNSALLSRARVYVLQSLSPEELMLLVDR 194

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                                      +     A  ++A  + G  R     +  V + A
Sbjct: 195 AVAAFNE----------------GRPPIRFEASAREQLAAWADGDARRLISAVEVVAESA 238

Query: 234 EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
           E A    +  E  + +L +                  + R   GG    + ISA     R
Sbjct: 239 EAAGRDEVNAEWLEISLSQN-----------------LRRFDKGGDAFYDQISALHKAVR 281

Query: 294 DAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +  D    +  +       P+   R ++ +A + +G+  P 
Sbjct: 282 GSDPDASLYWFARMLDGGADPKYLARRIVRMAIEDIGLADPR 323


>gi|255065859|ref|ZP_05317714.1| replication-associated recombination protein A [Neisseria sicca
           ATCC 29256]
 gi|255049770|gb|EET45234.1| replication-associated recombination protein A [Neisseria sicca
           ATCC 29256]
          Length = 437

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 68/331 (20%), Positives = 109/331 (32%), Gaps = 48/331 (14%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
             +      LRP TL++  GQ       K    A +        +L  GPPG+GKTTLA+
Sbjct: 8   QPDAPLAERLRPHTLDDVIGQQHLIGEGKPLRVAVE--GGKPHSMLLWGPPGVGKTTLAR 65

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILY 126
           ++A+     F   S  V +   D+   +   E         +LF+DE+HR +   ++   
Sbjct: 66  ILAQSFNAQFLPVSA-VFSGVKDIREAIDKAEIALQQGRATILFVDEVHRFNKAQQDAFL 124

Query: 127 PAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           P +E   L  +    E PS       LSR  +    +        L  +         + 
Sbjct: 125 PHVESGLLTFIGATTENPSFEVNPALLSRAQVYVLQSLSSDDLKKLIAKVLALPEYRDFT 184

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           IE         A+   +   D  A  +                     A+    KT+T E
Sbjct: 185 IEA-------DAQELLVNTADGDARRLLNLLEQL-----------LRAADTRRLKTLTAE 226

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
               +L                    I R   GG      ISA     R +  +    + 
Sbjct: 227 FLADSLGAQ-----------------IRRFDKGGESFYNQISALHKSVRGSHPNAALYWF 269

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +       PR   R ++ +AW+ +G+  P 
Sbjct: 270 CRMLDGGTDPRYLARRIVRMAWEDIGLADPR 300


>gi|241763747|ref|ZP_04761795.1| AAA ATPase central domain protein [Acidovorax delafieldii 2AN]
 gi|241367052|gb|EER61437.1| AAA ATPase central domain protein [Acidovorax delafieldii 2AN]
          Length = 437

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 74/339 (21%), Positives = 121/339 (35%), Gaps = 54/339 (15%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           + +  +        LRPR L E  GQ            A +  +      +  GPPG+GK
Sbjct: 1   MKQPAAPHQPLAERLRPRQLSEVIGQQHVLGPGMPLRLAFE--SGRPHSCILWGPPGVGK 58

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTN--------LEDRDVLFIDEIHRLSI 119
           TT+A+++A      F S S  V+    D+   +          ++ R ++F+DE+HR + 
Sbjct: 59  TTIARLMADAFDAQFISISA-VLGGVKDIRDAVQLAESARDGLMQQRTIVFVDEVHRFNK 117

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             ++   P +E      +    E PS       LSR                        
Sbjct: 118 SQQDAFLPHVESGLFTFIGATTENPSFEVNSALLSR---------------------AAV 156

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEI-AMRSRGTPRIAGRLLRRVRDFAEVA 236
             L     +DLK IV        L   +  A E     + G  R     L  +   A   
Sbjct: 157 YVLQPLSTDDLKQIVALAQSQQALPAIENEAIERLVAYADGDARRLLNTLETLEMAA--- 213

Query: 237 HAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAI 296
            A+    EI DA LL++  ++             + R   GG    +TISA     R + 
Sbjct: 214 -AQEQLAEITDAWLLKVLGER-------------MRRYDKGGEQFYDTISALHKSVRGSD 259

Query: 297 EDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            D    ++++       PR   R ++ +AW+ +G+  P 
Sbjct: 260 PDAALYWLVRMLDGGADPRYMARRIVRMAWEDIGLADPR 298


>gi|104781339|ref|YP_607837.1| recombination factor protein RarA [Pseudomonas entomophila L48]
 gi|95110326|emb|CAK15033.1| DNA-dependant ATPase [Pseudomonas entomophila L48]
          Length = 441

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 84/343 (24%), Positives = 125/343 (36%), Gaps = 52/343 (15%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD     S  V+Q     + LRP  L+E+ GQ    +  K   EA +    AL  ++F G
Sbjct: 1   MDLFR--SEPVAQ--PLAARLRPSNLDEYVGQEHLLARGKPLREALEQ--GALHSMIFWG 54

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLT-------NLEDRDVLFIDEI 114
           PPG+GKTTLA+++A+    +F + S  V+A   ++   +            R +LF+DE+
Sbjct: 55  PPGVGKTTLARLLAQFCDAHFETVSA-VLAGVKEIRQAVEVAKQQAGQYGRRTILFVDEV 113

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++   P +ED  L  +    E PS       LSR  +    +        L D
Sbjct: 114 HRFNKSQQDAFLPYVEDGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVD 173

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R                   +RG     L V DEA   +   + G  R     L    D 
Sbjct: 174 R---------------ALSEERGLGKRNLRVGDEAFKMLMAAADGDGRRMLNFLENASDL 218

Query: 233 AEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEP 292
           AE         EI    L  L  D                R   GG    + ISA     
Sbjct: 219 AEDGG------EIGVELLQSLLGDSR-------------RRFDKGGEAFYDQISALHKSV 259

Query: 293 RDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           R +  D    +  +       P    R ++ +A + +G   P 
Sbjct: 260 RGSNPDGALYWYARMLDGGCDPLYIARRVVRMASEDIGNADPR 302


>gi|10198155|gb|AAG15220.1|AF288461_6 unknown [Chloroflexus aurantiacus]
          Length = 377

 Score =  169 bits (427), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 81/324 (25%), Positives = 124/324 (38%), Gaps = 43/324 (13%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            +RPRTLEEF GQ       K+   A     + L  ++  GPPG GKTTLAQ++A     
Sbjct: 28  RMRPRTLEEFVGQHHLVGEGKLLRRAI--ANDQLFSLILWGPPGSGKTTLAQIIAHSTKA 85

Query: 81  NFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +F   S  V A   DL  ++   +D       R V+FIDEIHR +   ++ + P +ED  
Sbjct: 86  HFEPISA-VSAGVNDLRRVVQEAQDRLGMFQQRTVVFIDEIHRFNKSQQDAILPYVEDGT 144

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + L+    E PS       LSR  +             L DR                T 
Sbjct: 145 IILIGATTENPSFEVNSALLSRARVFKLEALTDEEIGVLIDR--------------ALTD 190

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
            +RG     + +  +A   +   + G  R A   L           A++    I +  L+
Sbjct: 191 RERGLGDLKIMLARDARDYLVNMANGDARTALNALEAA--------ARSKPPAIGETRLI 242

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            +   +       +RY          G +  + ISA     RD+  D    ++ +     
Sbjct: 243 TVDDIRDALQSRAVRY-------DKHGELHYDAISALHKSVRDSDPDGALYWLGRMLDGG 295

Query: 312 RTPR--GRLLMPIAWQHLGIDIPH 333
             P    R L+ IA + +G+  P 
Sbjct: 296 EDPLYIARRLVRIAVEDIGLADPQ 319


>gi|219849982|ref|YP_002464415.1| recombination factor protein RarA [Chloroflexus aggregans DSM 9485]
 gi|219544241|gb|ACL25979.1| AAA ATPase central domain protein [Chloroflexus aggregans DSM 9485]
          Length = 485

 Score =  169 bits (427), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 84/328 (25%), Positives = 128/328 (39%), Gaps = 43/328 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RPRTL+EF GQ       K+   A     + L  ++  GPPG GKTTLAQ++A 
Sbjct: 24  PLAARMRPRTLDEFVGQTHIIGEGKLLRRAI--ANDQLFSLILWGPPGSGKTTLAQIIAN 81

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAM 129
               +F   S  V A   DL  ++   +D       R V+FIDEIHR +   ++ + P +
Sbjct: 82  STNAHFEPLSA-VSAGVNDLRRVVQEAKDRLGMFQQRTVVFIDEIHRFNKSQQDAILPYV 140

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ED  + L+    E PS       LSR        RV  L     +  GI I     + E 
Sbjct: 141 EDGTIILIGATTENPSFEVNAALLSR-------ARVFTLEALTDEEIGILIDRALSDRE- 192

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
                 RG     + +  +A   +   S G  R A   L           A++    I +
Sbjct: 193 ------RGLGGMKIMLASDARKYLINMSNGDARTALNALEAA--------ARSKPPAIGE 238

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
             L+ +   +       +RY          G +  + ISA     RD+  D    ++ + 
Sbjct: 239 TRLITVDDIRDALQSRAVRY-------DKRGELHYDAISALHKSVRDSDPDGALYWLGRM 291

Query: 308 GFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                 P    R L+ IA + +G+  P 
Sbjct: 292 LDGGEDPLYIARRLVRIAVEDVGLADPQ 319


>gi|331004982|ref|ZP_08328392.1| putative ATPase associated with chromosome architecture [gamma
           proteobacterium IMCC1989]
 gi|330421224|gb|EGG95480.1| putative ATPase associated with chromosome architecture [gamma
           proteobacterium IMCC1989]
          Length = 466

 Score =  169 bits (427), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 76/344 (22%), Positives = 132/344 (38%), Gaps = 49/344 (14%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           +M     +    S +    + LRP+T++++ GQ    +  K   EA +     L  ++  
Sbjct: 14  LMPSNNSIDNTNSAQMPLAARLRPQTIQDYIGQQHLLAEGKPLREAIEKGQ--LHSMILW 71

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDE 113
           GPPG+GKT+LA+++A  +   + S S  V+A   D+   +   +        R +LF+DE
Sbjct: 72  GPPGVGKTSLARMLAHLIDAEYTSLSA-VLAGVKDIRQAVATAQLTQQTSGRRTLLFVDE 130

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           +HR +   ++   P +E+  +  +    E PS       LSR        RV +L     
Sbjct: 131 VHRFNKAQQDAFLPYVENGTITFIGATTENPSFELNNALLSRC-------RVYVLRRLGD 183

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
           D     +     + +       +G     L  +++    +A  + G  R A  LL    D
Sbjct: 184 DDIIQLLHRALNDSD-------KGLGQKELHCSEDVINILASAANGDARRALNLLEIASD 236

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
            AE      I  EI            +G D         + R   GG +  E ISA    
Sbjct: 237 LAEQNITLEIVAEI------------LGGD---------VRRFDKGGDIFYEQISALHKS 275

Query: 292 PRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            R +  D    + ++       P    R ++ +A + +G   P 
Sbjct: 276 VRGSSPDAALYWCMRMLDGGCDPLYVARRIVRMAIEDIGNADPR 319


>gi|307251991|ref|ZP_07533892.1| Replication-associated recombination protein A [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306860683|gb|EFM92695.1| Replication-associated recombination protein A [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 443

 Score =  169 bits (427), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 82/341 (24%), Positives = 127/341 (37%), Gaps = 52/341 (15%)

Query: 8   LSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           +S + S++   + + +RPRTL E+ GQ       K    A +A       ++F GPPG G
Sbjct: 1   MSFDFSEDFRPLPARMRPRTLAEYIGQAHLIGEGKPLRRAIEAGHS--HSMIFWGPPGTG 58

Query: 67  KTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           KTTLA+++A          S        I +A + A L      R +LF+DE+HR +   
Sbjct: 59  KTTLAEIIAHHFDAEVERLSAVTSGVKEIREAIERAKLNRQTGRRTLLFVDEVHRFNKSQ 118

Query: 122 EEILYPAMEDFQLDLM--VGEGPSARSVKINLSR-----FTLIAATTRVGLLTNPLQDRF 174
           ++   P +ED  +  +    E PS       LSR        + A     +LTN L D+ 
Sbjct: 119 QDAFLPHIEDGTIIFIGATTENPSFELNNALLSRAKIYILKPLQAVEIAQVLTNALYDK- 177

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
                             +RG       + D     +A    G  R A   L  + D AE
Sbjct: 178 ------------------ERGLGNESYYIEDNVIELLADYVNGDARFALNCLELMSDMAE 219

Query: 235 VAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRD 294
           ++       +  + ALL   + +              AR   GG    + ISA     R 
Sbjct: 220 ISPQG----KHLNKALLAEVLGER------------QARFDKGGDRYYDLISALHKSVRG 263

Query: 295 AIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +  D    +  +       P    R L+ IA + +G   P 
Sbjct: 264 SSPDGALYWYARILTAGGDPLYVARRLLAIASEDIGNADPR 304


>gi|303249802|ref|ZP_07336006.1| recombination factor protein RarA [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|302651369|gb|EFL81521.1| recombination factor protein RarA [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 446

 Score =  169 bits (427), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 83/341 (24%), Positives = 127/341 (37%), Gaps = 52/341 (15%)

Query: 8   LSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           LS + S++   + + +RPRTL E+ GQ       K    A +A       ++F GPPG G
Sbjct: 4   LSFDFSEDFRPLPARMRPRTLAEYIGQAHLIGEGKPLRRAIEAGHS--HSMIFWGPPGTG 61

Query: 67  KTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           KTTLA+++A          S        I +A + A L      R +LF+DE+HR +   
Sbjct: 62  KTTLAEIIAHHFDAEVERLSAVTSGVKEIREAIERAKLNRQTGRRTLLFVDEVHRFNKSQ 121

Query: 122 EEILYPAMEDFQLDLM--VGEGPSARSVKINLSR-----FTLIAATTRVGLLTNPLQDRF 174
           ++   P +ED  +  +    E PS       LSR        + A     +LTN L D+ 
Sbjct: 122 QDAFLPHIEDGTIIFIGATTENPSFELNNALLSRAKIYILKPLQAVEIAQVLTNALYDK- 180

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
                             +RG       + D     +A    G  R A   L  + D AE
Sbjct: 181 ------------------ERGLGNESYYIEDNVIELLADYVNGDARFALNCLELMSDMAE 222

Query: 235 VAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRD 294
           ++       +  + ALL   + +              AR   GG    + ISA     R 
Sbjct: 223 ISPQG----KHLNKALLAEVLGER------------QARFDKGGDRYYDLISALHKSVRG 266

Query: 295 AIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +  D    +  +       P    R L+ IA + +G   P 
Sbjct: 267 SSPDGALYWYARILTAGGDPLYVARRLLAIASEDIGNADPR 307


>gi|256822345|ref|YP_003146308.1| AAA ATPase central domain-containing protein [Kangiella koreensis
           DSM 16069]
 gi|256795884|gb|ACV26540.1| AAA ATPase central domain protein [Kangiella koreensis DSM 16069]
          Length = 451

 Score =  169 bits (427), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 70/342 (20%), Positives = 122/342 (35%), Gaps = 42/342 (12%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M  +  L  N          LRP +L ++ GQ    +  K   +A + +      ++F G
Sbjct: 1   MSGQSNLFSNSPLNAPLADRLRPTSLNDYVGQEHLLAAGKPLRQAIETQ--RPFSLIFWG 58

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIH 115
           PPG GKTTLA+++A+    +F + S  V+A   D+ A +             +LF+DE+H
Sbjct: 59  PPGTGKTTLARLIAQSSNAHFITISA-VLAGVKDIRAAVDEARQYQSQGKPTILFVDEVH 117

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P +ED  L  +    E PS       LSR  +           + L  R
Sbjct: 118 RFNKAQQDAFLPYVEDGTLTFIGATTENPSFELNNALLSRARVFVLKDLSETALDKLISR 177

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                       E+L      G     L++ D++   +   + G  R     L    + A
Sbjct: 178 --------ALTDEEL------GLGKYHLSIADDSRKHLVDAADGDGRRLLNFLELASELA 223

Query: 234 EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
              +  +   +                + L+      + R   GG    + ISA     R
Sbjct: 224 LAKNESSPVID---------------DEVLEETLTQSLRRFDKGGEHFYDQISALHKSVR 268

Query: 294 DAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +  D    +  +       P    R ++ +A + +G   P 
Sbjct: 269 GSNPDGALYWFCRMIDGGCEPLYVARRVVRMASEDIGNADPR 310


>gi|294671065|ref|ZP_06735920.1| hypothetical protein NEIELOOT_02773 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307173|gb|EFE48416.1| hypothetical protein NEIELOOT_02773 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 441

 Score =  169 bits (427), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 68/331 (20%), Positives = 109/331 (32%), Gaps = 48/331 (14%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
             +      LRP TL++  GQ       K    A +        +L  GPPG+GKTTLA+
Sbjct: 8   QPDAPLAERLRPHTLDDVIGQQHLIGEGKPLRVAVE--GGKPHSMLLWGPPGVGKTTLAR 65

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILY 126
           ++A+     F   S  V +   D+   +   E         +LF+DE+HR +   ++   
Sbjct: 66  ILAQSFNAQFLPVSA-VFSGVKDIREAIDKAEIALQQGRATILFVDEVHRFNKAQQDAFL 124

Query: 127 PAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           P +E   L  +    E PS       LSR  +    +        L  +         + 
Sbjct: 125 PHVESGLLTFIGATTENPSFEVNPALLSRAQVYVLQSLSSDDLQKLIAKVLALPEYRDFT 184

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           IE         A+   +   D  A  +                     A+    KT+T E
Sbjct: 185 IEA-------DAQELLVNTADGDARRLLNLLEQL-----------LRAADTRRLKTLTAE 226

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
               +L                    I R   GG      ISA     R +  +    + 
Sbjct: 227 FLADSLGAQ-----------------IRRFDKGGESFYNQISALHKSVRGSHPNAALYWF 269

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +       PR   R ++ +AW+ +G+  P 
Sbjct: 270 CRMLDGGTDPRYLARRIVRMAWEDIGLADPR 300


>gi|225024225|ref|ZP_03713417.1| hypothetical protein EIKCOROL_01097 [Eikenella corrodens ATCC
           23834]
 gi|224943250|gb|EEG24459.1| hypothetical protein EIKCOROL_01097 [Eikenella corrodens ATCC
           23834]
          Length = 446

 Score =  169 bits (427), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 69/327 (21%), Positives = 110/327 (33%), Gaps = 48/327 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP TL++  GQ       K    A +        +L  GPPG+GKTTLA+++A+
Sbjct: 13  PLAERLRPHTLDDVVGQQHLIGAGKPMRVAVE--GGQPHSMLLWGPPGVGKTTLARILAQ 70

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAME 130
                F   S  V +   D+   +   E         +LF+DE+HR +   ++   P +E
Sbjct: 71  SFNAQFLPVSA-VFSGVKDIREAVNKAEIALQQGRATILFVDEVHRFNKAQQDAFLPYVE 129

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
              L  +    E PS       LSR        +V +L     D         F   E  
Sbjct: 130 SGLLTFIGATTENPSFEVNPALLSR-------AQVYVLQALSADELAQLTAKVFALPEYR 182

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              ++  A+   +   D  A  +        R A                          
Sbjct: 183 SFSLEEDAQKLLIQTADGDARRLLNLLEQLLRAAAT------------------------ 218

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
                 I ++  D L     + I R   GG      ISA     R +  +    ++ +  
Sbjct: 219 ----RRISRLNADFLADSLGSQIRRFDKGGESFYNQISALHKSVRGSHPNAALYWLCRML 274

Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIPH 333
                PR   R ++ +AW+ +G+  P 
Sbjct: 275 DGGADPRYLARRIVRMAWEDIGLADPR 301


>gi|237746808|ref|ZP_04577288.1| recombination factor protein RarA [Oxalobacter formigenes HOxBLS]
 gi|229378159|gb|EEO28250.1| recombination factor protein RarA [Oxalobacter formigenes HOxBLS]
          Length = 430

 Score =  169 bits (427), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 74/330 (22%), Positives = 119/330 (36%), Gaps = 54/330 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP+T++E  GQ       K     A    E    ++  GPPG+GKTTLA+++A 
Sbjct: 5   PLAERLRPQTIDEVVGQEHLLGPGKPL-RLAFESGEP-HSMILWGPPGVGKTTLARLMAD 62

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAM 129
                F + S  V++   D+   +            R +LF+DE+HR +   ++   P +
Sbjct: 63  GFNAEFIALSA-VLSGVKDIREAVERARLIRSGSGRRTILFVDEVHRFNKSQQDAFLPHV 121

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E      +    E PS       LSR            +  PL             +  +
Sbjct: 122 ESGLFTFIGATTENPSFEVNNALLSRA--------AVYVLKPL-------------DNGN 160

Query: 188 LKTIVQRGA--KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           L T+V R    +L GL V+ EA   + M + G  R     L  V   A   + + I   +
Sbjct: 161 LDTLVNRALERELDGLTVSAEARTLLLMSADGDARRLLNNLEIVAQAARAKNEEEIGVAL 220

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
               L                    + R    G    + ISA     R +  D    ++ 
Sbjct: 221 LKETLG-----------------DAMRRFDNKGDHFYDQISALHKSVRGSSPDAALYWLT 263

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +       PR   R ++ +AW+ +G+  P 
Sbjct: 264 RMLDGGADPRYLARRIVRMAWEDIGLADPR 293


>gi|17547057|ref|NP_520459.1| recombination factor protein RarA [Ralstonia solanacearum GMI1000]
 gi|17429358|emb|CAD16045.1| putative atpase related to the helicase subunit of the holliday
           junction resolvase protein [Ralstonia solanacearum
           GMI1000]
          Length = 449

 Score =  168 bits (426), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 73/328 (22%), Positives = 120/328 (36%), Gaps = 48/328 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP +++E  GQ       K     A A  E    ++  GPPG+GKTTLA+++A 
Sbjct: 15  PLAERLRPHSVDEVIGQQHLLGPSKPL-RVAFASGEP-HSMILWGPPGVGKTTLARLMAD 72

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130
                F + S  V++   D+   +   E       R ++F+DE+HR +   ++   P +E
Sbjct: 73  AFDAEFIALSA-VLSGVKDIRDAVERAEQFRAHGRRTLVFVDEVHRFNKSQQDAFLPHVE 131

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
                 +    E PS       LSR  +    +                        ++L
Sbjct: 132 SGLFTFIGATTENPSFEVNGALLSRAAVYVLKS---------------------LSDDEL 170

Query: 189 KTIVQRGAKLT-GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           K + +R  +   GL     A   +   + G  R     +  V   A  A A + T    D
Sbjct: 171 KQLAERARQELGGLEWAPAAVDAVVASADGDGRKLLNNIEIVTRAAR-AQAGSETVPAID 229

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
            ALL  A+ +             + R   GG    + ISA     R +  D    +  + 
Sbjct: 230 EALLASALSEN------------LRRFDKGGDAFYDQISALHKSVRGSDPDAALYWFCRM 277

Query: 308 GFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                 PR   R ++ +AW+ +G+  P 
Sbjct: 278 LDGGADPRYLARRIVRMAWEDIGLADPR 305


>gi|167037129|ref|YP_001664707.1| recombination factor protein RarA [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320115548|ref|YP_004185707.1| AAA ATPase central domain-containing protein [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
 gi|166855963|gb|ABY94371.1| AAA ATPase, central domain protein [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319928639|gb|ADV79324.1| AAA ATPase central domain protein [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 443

 Score =  168 bits (426), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 77/341 (22%), Positives = 136/341 (39%), Gaps = 49/341 (14%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            +    V +       +RP+TL+EF GQ       K+  E  +   + +  ++  GPPG+
Sbjct: 7   SIFDNEVKKNKPLADRMRPKTLDEFVGQEHLLGKGKLLRELIEK--DNITSMILWGPPGV 64

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSI 119
           GKTTLA ++A      F + S  V++   ++  ++   E       R V+FIDEIHR + 
Sbjct: 65  GKTTLAMIIANMTNSKFITFSA-VLSGIKEIKEIMAKAELDAMYGTRTVVFIDEIHRFNK 123

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             ++   P +E   + L+    E PS       LSR  +         +  PL +   + 
Sbjct: 124 AQQDAFLPHVEKGNIILIGATTENPSFEVNSALLSRSKV--------FVMKPLTEEDLLI 175

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV-A 236
           +     + E      Q G  +  + +TDE   +IA+ + G  R+A   L      A+V  
Sbjct: 176 LLKRALKDE------QNGFGMYKIGITDEQLKKIALFANGDARVALNTLEIAVMGAKVIE 229

Query: 237 HAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRD 294
             + +T +I   A+ +     DK G +  +L                   ISA     R+
Sbjct: 230 GERIVTDDILADAMQKKTLLYDKQGEEHYNL-------------------ISAFHKSLRN 270

Query: 295 AIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +  D    ++ +       P    R ++  A + +G+  P 
Sbjct: 271 SDWDAAVYWLARMLEAGEDPLYIARRMIRFASEDIGLADPQ 311


>gi|256752628|ref|ZP_05493481.1| AAA ATPase central domain protein [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|256748512|gb|EEU61563.1| AAA ATPase central domain protein [Thermoanaerobacter ethanolicus
           CCSD1]
          Length = 443

 Score =  168 bits (426), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 73/341 (21%), Positives = 136/341 (39%), Gaps = 49/341 (14%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            +    V +       +RP+TL+EF GQ       K+  E  +   + +  ++  GPPG+
Sbjct: 7   SIFDNEVKKNKPLADRMRPKTLDEFVGQEHLLGKGKLLRELIEK--DNITSMILWGPPGV 64

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSI 119
           GKTTLA ++A      F + S  V++   ++  ++   E       R V+FIDEIHR + 
Sbjct: 65  GKTTLAMIIANMTNSKFVTFSA-VLSGIKEIKEIMAKAELDAMYGTRTVVFIDEIHRFNK 123

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             ++   P +E   + L+    E PS       LSR  +         +  PL +   + 
Sbjct: 124 AQQDAFLPHVEKGNIILIGATTENPSFEVNSALLSRSKV--------FVMKPLTEEDLLV 175

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV-A 236
           +      ++      +RG  +  + ++ +   +IA+ + G  R+A   L      A+V  
Sbjct: 176 L------LKRALRDKERGLGMYDIEISGDQLKKIALFANGDARVALNTLEIAVMGAKVIE 229

Query: 237 HAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRD 294
             + +T +I   A+ +     DK G +  +L                   ISA     R+
Sbjct: 230 GERIVTDDILADAMQKKTLLYDKQGEEHYNL-------------------ISAFHKSLRN 270

Query: 295 AIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +  D    ++ +       P    R ++  A + +G+  P 
Sbjct: 271 SDWDAAVYWLARMLEAGEDPLYIARRMIRFASEDIGLADPQ 311


>gi|225027995|ref|ZP_03717187.1| hypothetical protein EUBHAL_02264 [Eubacterium hallii DSM 3353]
 gi|224954709|gb|EEG35918.1| hypothetical protein EUBHAL_02264 [Eubacterium hallii DSM 3353]
          Length = 445

 Score =  168 bits (426), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 81/348 (23%), Positives = 133/348 (38%), Gaps = 52/348 (14%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD    +S    +E++ ++  +RP+ L+E  GQ       K+   A KA  + +  ++F 
Sbjct: 5   MDLFEYMSMQRKKEESPLAVRMRPKNLDEVAGQQHIIGKDKLLYRAIKA--DKISSLIFY 62

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDE 113
           GPPG GKTTLA+V+A     NF   +    +   D+   ++  +D       R +LFIDE
Sbjct: 63  GPPGTGKTTLAKVIANTTSANFVQMNA-TTSGKKDMEQAVSQAKDAFGMYGKRTILFIDE 121

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++ L P +ED  + L+    E P        LSR  +             L 
Sbjct: 122 IHRFNKAQQDYLLPFVEDGTVILIGATTENPYFEVNSALLSRSQIFHLEPLAESDIYRL- 180

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR--V 229
                        ++      +RG    G  +T+EAA  IA  + G  R A   +    +
Sbjct: 181 -------------VKTAVEDNERGMGAYGAVITEEAARFIAEMAGGDARRALNAVELGVL 227

Query: 230 RDFAEVAHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISA 287
               +      I   +A+  + R +   D+ G +  D                    ISA
Sbjct: 228 TTEPDDKGQLVIDLSVAEECIQRKSVNYDRDGDNHYD-------------------NISA 268

Query: 288 GLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +   R    D    Y+ +       P+   R +M  A + +G   P 
Sbjct: 269 FIKSMRGTDPDAAVFYLARMLDAGEDPKFIARRIMICASEDVGNADPQ 316


>gi|307825885|ref|ZP_07656100.1| AAA ATPase central domain protein [Methylobacter tundripaludum
           SV96]
 gi|307733004|gb|EFO03866.1| AAA ATPase central domain protein [Methylobacter tundripaludum
           SV96]
          Length = 435

 Score =  168 bits (426), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 70/328 (21%), Positives = 116/328 (35%), Gaps = 45/328 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP  L ++ GQ       K   EA    +  L  ++F GPPG GKTTLA+++A+
Sbjct: 9   PLADRMRPTELADYVGQQHILKPGKPLYEAI--ASGRLHSMIFWGPPGTGKTTLARLIAQ 66

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAM 129
                F   S  V++   ++ A +   +        R +LF+DE+HR +   ++   P +
Sbjct: 67  HSDAEFMPISA-VLSGVKEIRAAVAEAKKIQLEQHRRTILFVDEVHRFNKSQQDAFLPHV 125

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ED  +  +    E PS       LSR        RV +L     D            I+ 
Sbjct: 126 EDGTVYFVGATTENPSFALNNALLSR-------ARVYVLNALTADDLLAV-------IDK 171

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
             T   RG     + + D+   + A  + G  R    LL    + A     + +   IA 
Sbjct: 172 ALTDKVRGLGGLAIEMADDIKQQFAQAADGDARRLLNLLEIAVELAAAKGGQAVNEAIAK 231

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
             L                    + R    G      ISA     R +  D    ++ + 
Sbjct: 232 EVLSGG-----------------VRRFDNQGEEFYNQISALHKSVRGSSPDASLYWLCRM 274

Query: 308 GFI--QRTPRGRLLMPIAWQHLGIDIPH 333
                  +   R ++ +A + +G   P 
Sbjct: 275 MDGGCDLSYLARRVVRMASEDIGNADPR 302


>gi|307245272|ref|ZP_07527363.1| Replication-associated recombination protein A [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307254221|ref|ZP_07536065.1| Replication-associated recombination protein A [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307258684|ref|ZP_07540419.1| Replication-associated recombination protein A [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306853916|gb|EFM86130.1| Replication-associated recombination protein A [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306862820|gb|EFM94770.1| Replication-associated recombination protein A [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306867341|gb|EFM99194.1| Replication-associated recombination protein A [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
          Length = 428

 Score =  168 bits (426), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 81/326 (24%), Positives = 120/326 (36%), Gaps = 51/326 (15%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRTL E+ GQ       K    A +A       ++F GPPG GKTTLA+++A      
Sbjct: 1   MRPRTLAEYIGQAHLIGEGKPLRRAIEAGHS--HSMIFWGPPGTGKTTLAEIIAHHFDAE 58

Query: 82  FRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
               S        I +A + A L      R +LF+DE+HR +   ++   P +ED  +  
Sbjct: 59  VERLSAVTSGVKEIREAIERAKLNRQTGRRTLLFVDEVHRFNKSQQDAFLPHIEDGTIIF 118

Query: 137 M--VGEGPSARSVKINLSR-----FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           +    E PS       LSR        + A   V +LTN L D+                
Sbjct: 119 IGATTENPSFELNNALLSRAKIYILKPLQAVEIVQVLTNALYDK---------------- 162

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
              +RG       + D     +A    G  R A   L  + D AE++       +  + A
Sbjct: 163 ---ERGLGNESYCIEDNVIELLADYVNGDARFALNCLELMSDMAEISPQG----KRLNKA 215

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           LL   + +              AR   GG    + ISA     R +  D    +  +   
Sbjct: 216 LLAEVLGER------------QARFDKGGDRYYDLISALHKSVRGSSPDGALYWYARILT 263

Query: 310 IQRTPR--GRLLMPIAWQHLGIDIPH 333
               P    R L+ IA + +G   P 
Sbjct: 264 AGGDPLYVARRLLAIASEDIGNADPR 289


>gi|167034603|ref|YP_001669834.1| recombination factor protein RarA [Pseudomonas putida GB-1]
 gi|166861091|gb|ABY99498.1| AAA ATPase central domain protein [Pseudomonas putida GB-1]
          Length = 441

 Score =  168 bits (426), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 83/343 (24%), Positives = 125/343 (36%), Gaps = 52/343 (15%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD     S  V+Q     + LRP  L+E+ GQ    +  K   EA +    AL  ++F G
Sbjct: 1   MDLFR--SEPVAQ--PLAARLRPSNLDEYVGQEHLLARGKPLREALEQ--GALHSMIFWG 54

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLT-------NLEDRDVLFIDEI 114
           PPG+GKTTLA+++A+    +F + S  V+A   ++   +            R +LF+DE+
Sbjct: 55  PPGVGKTTLARLLAQFCDAHFETVSA-VLAGVKEIRQAVEVAKQQAGQYGRRTILFVDEV 113

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++   P +ED  L  +    E PS       LSR  +    +        L +
Sbjct: 114 HRFNKSQQDAFLPYVEDGTLLFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVN 173

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R                   +RG     L V DEA   +   + G  R     L    D 
Sbjct: 174 RALTE---------------ERGLGKRNLRVGDEAFKMLMAAADGDGRRMLNFLENASDL 218

Query: 233 AEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEP 292
           AE         EI    L  L  D                R   GG    + ISA     
Sbjct: 219 AE------DGSEIDVEMLQSLLGDSR-------------RRFDKGGEAFYDQISALHKSV 259

Query: 293 RDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           R +  D    +  +       P    R ++ +A + +G   P 
Sbjct: 260 RGSNPDGALYWFARMLDGGCDPLYIARRVVRMASEDIGNADPR 302


>gi|33597977|ref|NP_885620.1| recombination factor protein RarA [Bordetella parapertussis 12822]
 gi|33602883|ref|NP_890443.1| recombination factor protein RarA [Bordetella bronchiseptica RB50]
 gi|33574406|emb|CAE38744.1| conserved hypothetical protein [Bordetella parapertussis]
 gi|33577325|emb|CAE35882.1| conserved hypothetical protein [Bordetella bronchiseptica RB50]
          Length = 459

 Score =  168 bits (426), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 68/327 (20%), Positives = 118/327 (36%), Gaps = 43/327 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRPRTL +  GQ       K    A    +     ++F GPPG+GKTTLA+++A 
Sbjct: 30  PLAERLRPRTLSDVVGQSHLLGPDKPLRVA--FDSGRPHSMIFWGPPGVGKTTLARLMAD 87

Query: 77  ELGVNFRSTSGPVIAKAGDL------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
                F + S  V+    D+      A +      R +LF+DE+HR +   ++   P +E
Sbjct: 88  GFDAQFIAISA-VLGGVKDIRDAVVTAQVAQGQGRRTILFVDEVHRFNKSQQDAFLPYVE 146

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
                 +    E PS       LSR  +    +        L DR    +     + + +
Sbjct: 147 SGLFTFIGATTENPSFEVNSALLSRARVYVLQSLSAEELMQLVDRAVAALNEGLEDGQQI 206

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +                EA  ++A  + G  R     +  V + A+ A   ++     + 
Sbjct: 207 R-------------FEAEAREQLAAWADGDARRLISAVEVVAESAQAAGRDSVDAAWLET 253

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           +L +                  + R   GG    + ISA     R +  D    ++ +  
Sbjct: 254 SLSQN-----------------LRRFDKGGDAFYDQISALHKSVRGSDPDAALYWLARML 296

Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIPH 333
                P+   R L+ +A + +G+  P 
Sbjct: 297 DGGADPKYLARRLVRMAIEDIGLADPR 323


>gi|217970180|ref|YP_002355414.1| recombination factor protein RarA [Thauera sp. MZ1T]
 gi|217507507|gb|ACK54518.1| AAA ATPase central domain protein [Thauera sp. MZ1T]
          Length = 474

 Score =  168 bits (426), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 72/343 (20%), Positives = 120/343 (34%), Gaps = 52/343 (15%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D   L       +      +RP TL+E  GQ       K    A ++R      ++  
Sbjct: 1   MTD---LFDALEPPQVPLAERMRPHTLDEVAGQSHLLGPGKPLRLAFESR--RPHSMILW 55

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEI 114
           GPPG+GKTTLA+++AR     F + S  V +   ++   +             +LF+DE+
Sbjct: 56  GPPGVGKTTLARLMARGFDAEFVALSA-VFSGVKEIREAIQQAQAAKARGRHTILFVDEV 114

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++   P +E   +  +    E PS       LSR  +    +        L +
Sbjct: 115 HRFNKAQQDAFLPYVEQGLVTFIGATTENPSFEVNSALLSRAAVYVLESLDHDAMLRLFE 174

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R                           L   ++A   +   + G  R    L+ +V+  
Sbjct: 175 RAHAIACP-------------------TLGFDEDARERLIGFADGDARRLMNLIEQVQVA 215

Query: 233 AEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEP 292
           AE A    ++    D AL R                  + R   GG    + ISA     
Sbjct: 216 AETAKVDPVSATFVDQALSRN-----------------LRRFDKGGEAFYDQISALHKSV 258

Query: 293 RDAIEDLIEPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
           R +  D    ++ +       P   GR L+ +A + +G+  P 
Sbjct: 259 RGSDPDASLYWLCRMLDGGADPLYLGRRLIRMAVEDIGLADPR 301


>gi|254673529|emb|CBA08975.1| conserved hypothetical protein [Neisseria meningitidis alpha275]
          Length = 436

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 71/333 (21%), Positives = 112/333 (33%), Gaps = 49/333 (14%)

Query: 12  VSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
             + DA +   LRP TL++  GQ       K    A +        +L  GPPG+GKTTL
Sbjct: 6   AREPDAPLAERLRPHTLDDVVGQEHLIGEGKPLRVAVE--GGKPHSMLLWGPPGVGKTTL 63

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEI 124
           A+++A+     F   S  V +   D+   +   E         +LF+DE+HR +   ++ 
Sbjct: 64  ARILAQSFNAQFLPVSA-VFSGVKDIREAIDKAEIALQQGRATILFVDEVHRFNKAQQDA 122

Query: 125 LYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             P +E   L  +    E PS       LSR  +             L  +         
Sbjct: 123 FLPHVESGLLTFIGATTENPSFEVNPALLSRAQVYVLQPLSSDDLKKLIAKVLALPEYQE 182

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           + IE         A+   +   D  A  +        R A    RR+++           
Sbjct: 183 FTIET-------DAQKLLVNTVDGDARRLLNLLEQLLRAADT--RRLKNLTA-------- 225

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
                        D +G           I R   GG      ISA     R +  +    
Sbjct: 226 ---------EFLADSLGAQ---------IRRFDKGGESFYNQISALHKSVRGSHPNAALY 267

Query: 303 YMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +  +       PR   R ++ IAW+ +G+  P 
Sbjct: 268 WFCRMLDGGTDPRYLARRIVRIAWEDIGLADPR 300


>gi|158337198|ref|YP_001518373.1| recombination factor protein RarA/unknown domain fusion protein
           [Acaryochloris marina MBIC11017]
 gi|158307439|gb|ABW29056.1| ATPase, AAA family protein [Acaryochloris marina MBIC11017]
          Length = 742

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 75/344 (21%), Positives = 141/344 (40%), Gaps = 44/344 (12%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD      + + + +A ++  LRPRTL+EF GQ E     ++   A +A  + L  ++F 
Sbjct: 1   MDLFEQHRQQLLETEAPLAARLRPRTLDEFVGQDEIVGPGRLLRRAIQA--DQLSSLIFY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDE 113
           GPPG GKTTLAQ++A     +F + +  V+A   D+ + +   +D       R +LF+DE
Sbjct: 59  GPPGTGKTTLAQIIANTTQAHFLALNA-VLAGIKDIRSSVDEAQDRRGQYGQRTILFVDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           +HR +   ++ L P +E+  + L+    E P     K  +SR  +    + +        
Sbjct: 118 VHRFNKAQQDALLPWVENGTVILIGATTENPYFEVNKALVSRSRIFQLRSLM-------- 169

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
                         +DL+ +++R  +       D A       +     +A    R + +
Sbjct: 170 -------------PDDLRQVLERALQDKYFGYGDTAIELEGAATEHLINVANGDARALLN 216

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
             E+A   T   +     +      +    +  + Y          G    +TISA +  
Sbjct: 217 ALELAIETTEPDDQGVIPITLAVA-EASIQRRAVLY-------DKEGDAHFDTISAFIKS 268

Query: 292 PRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            R +  D    ++ +  +    PR   R ++ +A + +G+  P 
Sbjct: 269 MRGSDPDAALYWLARMVYAGEDPRFIFRRMIILASEDVGLADPQ 312


>gi|163846016|ref|YP_001634060.1| recombination factor protein RarA [Chloroflexus aurantiacus
           J-10-fl]
 gi|222523744|ref|YP_002568214.1| recombination factor protein RarA [Chloroflexus sp. Y-400-fl]
 gi|163667305|gb|ABY33671.1| AAA ATPase central domain protein [Chloroflexus aurantiacus
           J-10-fl]
 gi|222447623|gb|ACM51889.1| AAA ATPase central domain protein [Chloroflexus sp. Y-400-fl]
          Length = 497

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 81/324 (25%), Positives = 124/324 (38%), Gaps = 43/324 (13%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            +RPRTLEEF GQ       K+   A     + L  ++  GPPG GKTTLAQ++A     
Sbjct: 28  RMRPRTLEEFVGQHHLVGEGKLLRRAI--ANDQLFSLILWGPPGSGKTTLAQIIAHSTKA 85

Query: 81  NFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +F   S  V A   DL  ++   +D       R V+FIDEIHR +   ++ + P +ED  
Sbjct: 86  HFEPISA-VSAGVNDLRRVVQEAQDRLGMFQQRTVVFIDEIHRFNKSQQDAILPYVEDGT 144

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + L+    E PS       LSR  +             L DR                T 
Sbjct: 145 IILIGATTENPSFEVNSALLSRARVFKLEALTDEEIGVLIDR--------------ALTD 190

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
            +RG     + +  +A   +   + G  R A   L           A++    I +  L+
Sbjct: 191 RERGLGDLKIMLARDARDYLVNMANGDARTALNALEAA--------ARSKPPAIGETRLI 242

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            +   +       +RY          G +  + ISA     RD+  D    ++ +     
Sbjct: 243 TVDDIRDALQSRAVRY-------DKHGELHYDAISALHKSVRDSDPDGALYWLGRMLDGG 295

Query: 312 RTPR--GRLLMPIAWQHLGIDIPH 333
             P    R L+ IA + +G+  P 
Sbjct: 296 EDPLYIARRLVRIAVEDIGLADPQ 319


>gi|210608530|ref|ZP_03287903.1| hypothetical protein CLONEX_00082 [Clostridium nexile DSM 1787]
 gi|210152981|gb|EEA83987.1| hypothetical protein CLONEX_00082 [Clostridium nexile DSM 1787]
          Length = 443

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 80/344 (23%), Positives = 134/344 (38%), Gaps = 43/344 (12%)

Query: 2   MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD    +  N +Q+++ + S +RP+TLEE  GQ       K+   A KA  + L  ++F 
Sbjct: 1   MDLFDYMRENAAQKESPLASRMRPKTLEEVVGQQHIIGQDKLLYRAIKA--DKLSSIIFY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDE 113
           GPPG GKTTLA+V+A      F   +  V A   D+  ++   +D       + +LF+DE
Sbjct: 59  GPPGTGKTTLAKVIANTTSAQFTQINATV-AGKKDMEEVVRKAKDNLGMYGQKTILFVDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++ L P +ED  L L+    E P        +SR       + V  L    +
Sbjct: 118 IHRFNKGQQDYLLPFVEDGTLILIGATTENPYFEVNSALISR-------SSVFELRALTK 170

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
           +   + ++   Y+         +G       + D+A   +A  + G  R A   +     
Sbjct: 171 EDIKVLLKRAVYDE-------IKGMGSYRADIDDDALEFLADIAGGDARNALNAIELGIL 223

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
             E +          D A                     + R    G    +TISA +  
Sbjct: 224 TTERSKEDGKIHITLDVAQEC--------------IQKRVVRYDKTGDNHYDTISAFIKS 269

Query: 292 PRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            R +  D    Y+ +  +     +   R +M  A + +G   P+
Sbjct: 270 LRGSDPDAAVYYLAKMLYAGEDIKFIARRIMISASEDVGNADPN 313


>gi|148547066|ref|YP_001267168.1| recombination factor protein RarA [Pseudomonas putida F1]
 gi|148511124|gb|ABQ77984.1| Recombination protein MgsA [Pseudomonas putida F1]
          Length = 441

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 82/343 (23%), Positives = 125/343 (36%), Gaps = 52/343 (15%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD     S  V+Q     + LRP +L+E+ GQ    +  K   EA +    AL  ++F G
Sbjct: 1   MDLFR--SEPVAQ--PLAARLRPSSLDEYVGQEHLLARGKPLREALEQ--GALHSMIFWG 54

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLT-------NLEDRDVLFIDEI 114
           PPG+GKTTLA+++A+    +F + S  V+A   ++   +            R +LF+DE+
Sbjct: 55  PPGVGKTTLARLLAQFCDAHFETVSA-VLAGVKEIRQAVEVAKQQAGQYGRRTILFVDEV 113

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++   P +ED  L  +    E PS       LSR  +    +        L +
Sbjct: 114 HRFNKSQQDAFLPYVEDGTLLFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVN 173

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R                    RG     L V D+A   +   + G  R     L    D 
Sbjct: 174 RALTEA---------------RGLGKRNLRVGDDAFKMLMAAADGDGRRMLNFLENASDL 218

Query: 233 AEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEP 292
           AE         EI    L  L  D                R   GG    + ISA     
Sbjct: 219 AE------DGSEIDVEMLQSLLGDSR-------------RRFDKGGEAFYDQISALHKSV 259

Query: 293 RDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           R +  D    +  +       P    R ++ +A + +G   P 
Sbjct: 260 RGSNPDGALYWFARMLDGGCDPLYIARRVVRMASEDIGNADPR 302


>gi|15677127|ref|NP_274280.1| recombination factor protein RarA [Neisseria meningitidis MC58]
 gi|7226497|gb|AAF41636.1| conserved hypothetical protein [Neisseria meningitidis MC58]
 gi|254671375|emb|CBA08828.1| conserved hypothetical protein [Neisseria meningitidis alpha153]
 gi|316984713|gb|EFV63674.1| magnesium chelatase, subunit ChlI family protein [Neisseria
           meningitidis H44/76]
 gi|325134496|gb|EGC57141.1| magnesium chelatase, subunit ChlI family [Neisseria meningitidis
           M13399]
 gi|325140513|gb|EGC63034.1| magnesium chelatase, subunit ChlI family [Neisseria meningitidis
           CU385]
 gi|325200112|gb|ADY95567.1| magnesium chelatase, subunit ChlI family [Neisseria meningitidis
           H44/76]
          Length = 436

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 71/333 (21%), Positives = 112/333 (33%), Gaps = 49/333 (14%)

Query: 12  VSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
             + DA +   LRP TL++  GQ       K    A +        +L  GPPG+GKTTL
Sbjct: 6   AREPDAPLAERLRPHTLDDVVGQEHLIGEGKPLRVAVE--GGKPHSMLLWGPPGVGKTTL 63

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEI 124
           A+++A+     F   S  V +   D+   +   E         +LF+DE+HR +   ++ 
Sbjct: 64  ARILAQSFNAQFLPVSA-VFSGVKDIREAIDKAEIALQQGRATILFVDEVHRFNKAQQDA 122

Query: 125 LYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             P +E   L  +    E PS       LSR  +             L  +         
Sbjct: 123 FLPHVESGLLTFIGATTENPSFEVNPALLSRAQVYVLQPLSSDDLKKLIAKVLALPEYQE 182

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           + IE         A+   +   D  A  +        R A    RR+++           
Sbjct: 183 FTIET-------DAQKLLVNTADGDARRLLNLLEQLLRAADT--RRLKNLTA-------- 225

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
                        D +G           I R   GG      ISA     R +  +    
Sbjct: 226 ---------EFLADSLGAQ---------IRRFDKGGESFYNQISALHKSVRGSHPNAALY 267

Query: 303 YMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +  +       PR   R ++ IAW+ +G+  P 
Sbjct: 268 WFCRMLDGGTDPRYLARRIVRIAWEDIGLADPR 300


>gi|220908139|ref|YP_002483450.1| recombination factor protein RarA/unknown domain fusion protein
           [Cyanothece sp. PCC 7425]
 gi|219864750|gb|ACL45089.1| AAA ATPase central domain protein [Cyanothece sp. PCC 7425]
          Length = 731

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 74/329 (22%), Positives = 132/329 (40%), Gaps = 44/329 (13%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +   + +RPR+L+EF GQ       ++   A +A  + L  ++F GPPG GKTTLA+++A
Sbjct: 9   EPLAARMRPRSLDEFIGQDHIIGEGRLLRRAIQA--DQLSSLIFYGPPGTGKTTLARMIA 66

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLT------NLEDRDVLFIDEIHRLSIIVEEILYPAM 129
                 F + +  V+A   ++ A +        L  R +LF+DE+HR +   ++ L P +
Sbjct: 67  NTTQAYFIAINA-VLAGVKEIRAAVETAQTHQQLRQRTILFVDEVHRFNKAQQDALLPWV 125

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E+  L L+    E P     K  +SR  +            PL +        + Y++  
Sbjct: 126 ENGTLILIGATTENPYFEVNKALVSRSRIFQL--------KPLSE-------QDLYQVAF 170

Query: 188 LK-TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
                 +RG     + V D+A   +   + G  R    LL  +    E        +   
Sbjct: 171 QALHDRERGYGNLKVRVEDDALAHLVNVANGDAR---ALLNALELAVETTPGDAQDQIHI 227

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
             A+   +I +                    G V  +TISA +   R +  D    ++ +
Sbjct: 228 TLAIAEESIQRRA------------VLYDKEGDVHFDTISAFIKSLRGSDPDAALYWLAR 275

Query: 307 QGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
             +    PR   R ++ +A + +G+  P 
Sbjct: 276 MIYAGEDPRFLFRRMLILASEDVGLADPQ 304


>gi|254805040|ref|YP_003083261.1| hypothetical protein NMO_1076 [Neisseria meningitidis alpha14]
 gi|254668582|emb|CBA06099.1| conserved hypothetical protein [Neisseria meningitidis alpha14]
          Length = 436

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 71/333 (21%), Positives = 111/333 (33%), Gaps = 49/333 (14%)

Query: 12  VSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
             + DA +   LRP TL++  GQ       K    A +        +L  GPPG+GKTTL
Sbjct: 6   AREPDAPLAERLRPHTLDDVVGQEHLIGEGKPLRVAVE--GGKPHSMLLWGPPGVGKTTL 63

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEI 124
           A+++A+     F   S  V +   D+   +   E         +LF+DE+HR +   ++ 
Sbjct: 64  ARILAQSFNAQFLPVSA-VFSGVKDIREAIDKAEIALQQGRATILFVDEVHRFNKAQQDA 122

Query: 125 LYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             P +E   L  +    E PS       LSR  +             L  +         
Sbjct: 123 FLPHVESGLLTFIGATTENPSFEVNPALLSRAQVYVLQPLSSDDLKKLIAKVLALPEYQE 182

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           + IE         A+   +   D  A  +                     A+    KT+T
Sbjct: 183 FTIET-------DAQKLLVNTADGDARRLLNLLEQL-----------LRAADTRRLKTLT 224

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            E    +L                    I R   GG      ISA     R +  +    
Sbjct: 225 AEFLADSLGAQ-----------------IRRFDKGGESFYNQISALHKSVRGSHPNAALY 267

Query: 303 YMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +  +       PR   R ++ IAW+ +G+  P 
Sbjct: 268 WFCRMLDGGTDPRYLARRIVRIAWEDIGLADPR 300


>gi|307263100|ref|ZP_07544722.1| Replication-associated recombination protein A [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|306871726|gb|EFN03448.1| Replication-associated recombination protein A [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 443

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 83/341 (24%), Positives = 128/341 (37%), Gaps = 52/341 (15%)

Query: 8   LSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           +S + S++   + + +RPRTL E+ GQ       K    A +A       ++F GPPG G
Sbjct: 1   MSFDFSEDFRPLPARMRPRTLAEYIGQAHLIGEGKPLRRAIEAGHS--HSMIFWGPPGTG 58

Query: 67  KTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           KTTLA+++A          S        I +A + A L      R +LF+DE+HR +   
Sbjct: 59  KTTLAEIIAHHFDAEVERLSAVTSGVKEIREAIERAKLNRQTGRRTLLFVDEVHRFNKSQ 118

Query: 122 EEILYPAMEDFQLDLM--VGEGPSARSVKINLSR-----FTLIAATTRVGLLTNPLQDRF 174
           ++   P +ED  +  +    E PS       LSR        + A     +LTN L D+ 
Sbjct: 119 QDAFLPHIEDGTIIFIGATTENPSFELNNALLSRAKIYILKPLQAVEIAQVLTNALYDK- 177

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
                             +RG       + D     +A    G  R A   L  + D AE
Sbjct: 178 ------------------ERGLGNESYYIEDNVIELLADYVNGDARFALNCLELMSDMAE 219

Query: 235 VAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRD 294
           ++       +  + ALL    + +G  Q          R   GG    + ISA     R 
Sbjct: 220 ISPQG----KHLNKALL---AEVLGERQT---------RFDKGGDRYYDLISALHKSVRG 263

Query: 295 AIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +  D    +  +       P    R L+ IA + +G   P 
Sbjct: 264 SSPDGALYWYARILTAGGDPLYVARRLLAIASEDIGNADPR 304


>gi|319410506|emb|CBY90869.1| putative ATPase [Neisseria meningitidis WUE 2594]
          Length = 436

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 71/333 (21%), Positives = 112/333 (33%), Gaps = 49/333 (14%)

Query: 12  VSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
             + DA +   LRP TL++  GQ       K    A +        +L  GPPG+GKTTL
Sbjct: 6   AREPDAPLAERLRPHTLDDVVGQEHLIGEGKPLRVAVE--GGKPHSMLLWGPPGVGKTTL 63

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEI 124
           A+++A+     F   S  V +   D+   +   E         +LF+DE+HR +   ++ 
Sbjct: 64  ARILAQSFNAQFLPVSA-VFSGVKDIREAIDKAEIALQQGRATILFVDEVHRFNKAQQDA 122

Query: 125 LYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             P +E   L  +    E PS       LSR  +             L  +         
Sbjct: 123 FLPHVESGLLTFIGATTENPSFEVNPALLSRAQVYVLQPLSSDDLKKLIAKVLALPEYQE 182

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           + IE         A+   +   D  A  +        R A    RR+++           
Sbjct: 183 FTIET-------DAQKLLVNTVDGDARRLLNLLEQLLRAADT--RRLKNLTA-------- 225

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
                        D +G           I R   GG      ISA     R +  +    
Sbjct: 226 ---------EFLADSLGAQ---------IRRFDKGGESFYNQISALHKSVRGSHPNAALY 267

Query: 303 YMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +  +       PR   R ++ IAW+ +G+  P 
Sbjct: 268 WFCRMLDGGTDPRYLARRIVRIAWEDIGLADPR 300


>gi|160937850|ref|ZP_02085209.1| hypothetical protein CLOBOL_02742 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439289|gb|EDP17042.1| hypothetical protein CLOBOL_02742 [Clostridium bolteae ATCC
           BAA-613]
          Length = 445

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 89/343 (25%), Positives = 139/343 (40%), Gaps = 44/343 (12%)

Query: 2   MDREGLL-SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD    +  +++ +E    S LRPRTL+E  GQ       K+   A +A  + L  ++F 
Sbjct: 8   MDLFDYMREKDMEKESPLASRLRPRTLDEVVGQQHIVGKDKLLYRAIQA--DKLGSIIFY 65

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDE 113
           GPPG GKTTLA+V+A     +FR  +  V A   D+  ++   +D       + +LF+DE
Sbjct: 66  GPPGTGKTTLAKVIANTTSADFRQINATV-AGKKDMEEVVKEAKDNIGMYGRKTILFVDE 124

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++ L P +ED  L L+    E P        LSR       +R+  L    +
Sbjct: 125 IHRFNKGQQDYLLPFVEDGTLILIGATTENPYFEVNGALLSR-------SRIFELKPLEK 177

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
           +     IR   Y+ E       RG  +    + ++AA  +A  + G  R A   L  V  
Sbjct: 178 EDVKELIRRAVYDKE-------RGMGIYDADIDEDAADFLADTANGDARAA---LNAVEL 227

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
                      R   D A+ +  I K               R    G    +TISA +  
Sbjct: 228 GVLTTAKGADGRIHIDMAVAQECIQKRA------------VRYDKNGDNHYDTISAFIKS 275

Query: 292 PRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
            R +  D    Y+ +  +     +   R +M  A + +G   P
Sbjct: 276 MRGSDPDAAVYYLARMLYAGEDIKFIARRIMICAAEDVGNADP 318


>gi|163855896|ref|YP_001630194.1| recombination factor protein RarA [Bordetella petrii DSM 12804]
 gi|163259624|emb|CAP41925.1| conserved hypothetical protein [Bordetella petrii]
          Length = 446

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 71/327 (21%), Positives = 117/327 (35%), Gaps = 43/327 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRPRTL E  GQ       K    A    +     ++F GPPG+GKTTLA+++A 
Sbjct: 17  PLAERLRPRTLSEVVGQSHLLGPDKPLRVA--FDSGRPHSMIFWGPPGVGKTTLARLMAD 74

Query: 77  ELGVNFRSTSGPVIAKAGDL------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
                F + S  V+    D+      A +      R +LF+DE+HR +   ++   P +E
Sbjct: 75  GFDAQFIAISA-VLGGVKDIRDAVVTAQVAQGQGRRTILFVDEVHRFNKAQQDAFLPYVE 133

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
                 +    E PS       LSR  +    +        L DR    +          
Sbjct: 134 SGLFTFIGATTENPSFEVNSALLSRARVYVLQSLSADELQQLIDRAVHALNEG------- 186

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
                R A    +  T +A  ++A  + G  R     +  V + A+ A    +     + 
Sbjct: 187 -----REAGA-QVRFTADAREQLAAWADGDARRLISAVEVVAESAQAAGRDEVDAGWLET 240

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           +L +                  + R   GG    + ISA     R +  D    ++ +  
Sbjct: 241 SLSQN-----------------LRRFDKGGDAFYDQISALHKAVRGSDPDAALYWLARML 283

Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIPH 333
                P+   R L+ +A + +G+  P 
Sbjct: 284 DGGADPKYLARRLVRMAIEDIGLADPR 310


>gi|78042989|ref|YP_361014.1| recombination factor protein RarA [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77995104|gb|ABB14003.1| ATPase, AAA family [Carboxydothermus hydrogenoformans Z-2901]
          Length = 444

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 84/353 (23%), Positives = 136/353 (38%), Gaps = 65/353 (18%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD        V++E      +RPR+L+EF GQ       K+   A    ++ L  ++F G
Sbjct: 1   MDLWDTAKNKVNKEAPLAYRMRPRSLDEFIGQEHILGEGKLLRRAIL--SDRLGSLIFYG 58

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEI 114
           PPG GKTTLA+++A      F S +  V +  G++  ++   +       +R VLFIDEI
Sbjct: 59  PPGTGKTTLARIIASTTKSGFESINA-VTSGVGEIREVIKKAKEREKYYGERTVLFIDEI 117

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++ L P +E   + L+    E P        LSR                   
Sbjct: 118 HRFNKAQQDALLPEVEAGTIVLIGATTENPYFEVNAPLLSRSR----------------- 160

Query: 173 RFGIPIRLNFYEIEDLKTIV-------QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
                      E E ++ IV       +RG     + +++EA   +   + G  R A   
Sbjct: 161 ----IFEFKPLEPEHIREIVRRALVDKERGLGEYKVEISEEALDHLVTMAAGDARAALNG 216

Query: 226 LRRVRDFA--EVAHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVG 281
           +         +    + IT EI + ++ + A   DK G +  D                 
Sbjct: 217 IELAVLTTPPDEDGVRKITVEIIEQSMQKKAIVYDKEGDNHYD----------------- 259

Query: 282 IETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
             TISA +   R +  D    Y+ +       PR   R L+  A + +G+  P
Sbjct: 260 --TISAFIKSLRGSDPDAAVYYLARMLEAGEDPRFIARRLIVHAAEDVGLADP 310


>gi|194288885|ref|YP_002004792.1| recombination factor protein rara [Cupriavidus taiwanensis LMG
           19424]
 gi|193222720|emb|CAQ68723.1| recombination helicase ATPase [Cupriavidus taiwanensis LMG 19424]
          Length = 464

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 73/341 (21%), Positives = 124/341 (36%), Gaps = 53/341 (15%)

Query: 5   EGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           + L S +  +    +   LRPRT++E  GQ       K    A ++       ++  GPP
Sbjct: 3   DTLFSESPDRSRQPLAERLRPRTIDEVIGQQHLLGPGKPLRVAFESGE--PHSMILWGPP 60

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRL 117
           G+GKTTLA+++A      F + S  V++   D+   +   E       R ++F+DE+HR 
Sbjct: 61  GVGKTTLARLMADAFDAEFIALSA-VLSGVKDIREAVERAEQFRAHGRRTLVFVDEVHRF 119

Query: 118 SIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
           +   ++   P +E      +    E PS       LSR  +    +              
Sbjct: 120 NKSQQDAFLPHVESGLFTFIGATTENPSFEVNGALLSRAAVYVLKS-------------- 165

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLT-GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
                   +  +L  +  R ++   G+   DEA   I   + G  R     +  V   A 
Sbjct: 166 -------LDDAELTQLALRASEELGGVGWQDEALQLIVASADGDGRKLLNNIEIVARAAR 218

Query: 235 VAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRD 294
            A A  I   +  +AL                    + R   GG    + ISA     R 
Sbjct: 219 NAGAAQIDTALLGSALSEN-----------------LRRFDKGGDAFYDQISALHKSVRG 261

Query: 295 AIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +  D    +  +       PR   R ++ +AW+ +G+  P 
Sbjct: 262 SDPDAALYWFCRMIDGGADPRYLARRIVRMAWEDIGLADPR 302


>gi|126207922|ref|YP_001053147.1| recombination factor protein RarA [Actinobacillus pleuropneumoniae
           L20]
 gi|126096714|gb|ABN73542.1| hypothetical protein APL_0438 [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
          Length = 446

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 83/341 (24%), Positives = 127/341 (37%), Gaps = 52/341 (15%)

Query: 8   LSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           LS + S++   + + +RPRTL E+ GQ       K    A +A       ++F GPPG G
Sbjct: 4   LSFDFSEDFRPLPARMRPRTLAEYIGQAHLIEEGKPLRRAIEAGHS--HSMIFWGPPGTG 61

Query: 67  KTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           KTTLA+++A          S        I +A + A L      R +LF+DE+HR +   
Sbjct: 62  KTTLAEIIAHHFDAEVERLSAVTSGVKEIREAIERAKLNRQTGRRTLLFVDEVHRFNKSQ 121

Query: 122 EEILYPAMEDFQLDLM--VGEGPSARSVKINLSR-----FTLIAATTRVGLLTNPLQDRF 174
           ++   P +ED  +  +    E PS       LSR        + A     +LTN L D+ 
Sbjct: 122 QDAFLPHIEDGTIIFIGATTENPSFELNNALLSRAKIYILKPLQAVEIAQVLTNALYDK- 180

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
                             +RG       + D     +A    G  R A   L  + D AE
Sbjct: 181 ------------------ERGLGNESYYIEDNVIELLADYVNGDARFALNCLELMSDMAE 222

Query: 235 VAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRD 294
           ++       +  + ALL   + +              AR   GG    + ISA     R 
Sbjct: 223 ISSQG----KRLNKALLAEVLGER------------QARFDKGGDRYYDLISALHKSVRG 266

Query: 295 AIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +  D    +  +       P    R L+ IA + +G   P 
Sbjct: 267 SSPDGALYWYARILTAGGDPLYVARRLLAIASEDIGNADPR 307


>gi|304316707|ref|YP_003851852.1| ATPase AAA [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302778209|gb|ADL68768.1| AAA ATPase central domain protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 444

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 83/348 (23%), Positives = 134/348 (38%), Gaps = 52/348 (14%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD       N    +A ++  +RP TL+EF GQ     + K+   A KA  + +  ++F 
Sbjct: 1   MDMFQFAHNNFKHSNAPLADRMRPTTLDEFVGQKHILGHDKLLYRAIKA--DRVRSLIFY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTN-------LEDRDVLFIDE 113
           GPPG GKTTLA ++A     +F   +  V +   D+  ++            R +LFIDE
Sbjct: 59  GPPGTGKTTLANIIANTTKSSFEKLNA-VTSGVTDIKKIVNESKDRLSMYGKRTILFIDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++ L P +ED  + L+    E P    ++  +SR  +            PL 
Sbjct: 118 IHRFNKSQQDALLPYVEDGTIILIGATTENPYFEVIRPLVSRSMIFELY--------PLS 169

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
           +     I L     E      +RG     + +TD+A   I   S G  R A   +     
Sbjct: 170 NEDIKEIVLRALNDE------KRGLGNEKIKITDDALNHIITYSDGDARAALNAIELAFL 223

Query: 232 FAEVAHAKT--ITREIADAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISA 287
             E        I  EIA   + +     DK G +  D                   +ISA
Sbjct: 224 TTERDENGVINIDIEIAQECIQKKVLKYDKDGDNHYD-------------------SISA 264

Query: 288 GLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +   R +  D    ++ +  +    P    R ++  A + +G   P+
Sbjct: 265 FIKSMRGSDPDAALYWLAKMIYAGEDPLFIARRIVICAAEDVGNADPN 312


>gi|190149782|ref|YP_001968307.1| hypothetical protein APP7_0513 [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|189914913|gb|ACE61165.1| hypothetical protein APP7_0513 [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
          Length = 446

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 84/341 (24%), Positives = 128/341 (37%), Gaps = 52/341 (15%)

Query: 8   LSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           LS + S++   + + +RPRTL E+ GQ       K    A +A       ++F GPPG G
Sbjct: 4   LSFDFSEDFRPLPARMRPRTLAEYIGQAHLIGEGKPLRRAIEAGHS--HSMIFWGPPGTG 61

Query: 67  KTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           KTTLA+++A          S        I +A + A L      R +LF+DE+HR +   
Sbjct: 62  KTTLAEIIAHHFDAEVERLSAVTSGVKEIREAIERAKLNRQTGRRTLLFVDEVHRFNKSQ 121

Query: 122 EEILYPAMEDFQLDLM--VGEGPSARSVKINLSR-----FTLIAATTRVGLLTNPLQDRF 174
           ++   P +ED  +  +    E PS       LSR        + A     +LTN L D+ 
Sbjct: 122 QDAFLPHIEDGTIIFIGATTENPSFELNNALLSRAKIYILKPLQAVEIAQVLTNALYDK- 180

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
                             +RG       + D     +A    G  R A   L  + D AE
Sbjct: 181 ------------------ERGLGNESYYIEDNVIELLADYVNGDARFALNCLELMSDMAE 222

Query: 235 VAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRD 294
           ++       +  + ALL    + +G  Q          R   GG    + ISA     R 
Sbjct: 223 ISPQG----KHLNKALL---AEVLGERQT---------RFDKGGDRYYDLISALHKSVRG 266

Query: 295 AIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +  D    +  +       P    R L+ IA + +G   P 
Sbjct: 267 SSPDGALYWYARILTAGGDPLYVARRLLAIASEDIGNADPR 307


>gi|259502469|ref|ZP_05745371.1| replication-associated recombination protein A [Lactobacillus antri
           DSM 16041]
 gi|259169612|gb|EEW54107.1| replication-associated recombination protein A [Lactobacillus antri
           DSM 16041]
          Length = 442

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 73/346 (21%), Positives = 127/346 (36%), Gaps = 56/346 (16%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M +E L ++  S      + +RP +L EF GQ       +V  E  +   + L  ++F G
Sbjct: 1   MHQESLFAQTNSAATPLANRVRPASLGEFVGQQHLIGPHRVLRELIE--NDQLSSLIFWG 58

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIH 115
           PPG+GKTTLA+++A++   +F + S  V +   D+  ++   E       R + FIDEIH
Sbjct: 59  PPGVGKTTLAEIIAQQTKAHFVTFSA-VTSSIKDIRKIMQEAEQNREYGERTICFIDEIH 117

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P +E   + L+    E PS       LSR  +                 
Sbjct: 118 RFNKAQQDAFLPFVERGSIILIGATTENPSFEINSALLSRCKVFVLKA------------ 165

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAK------LTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
                        DL+ +++R            +    +A   IA  + G  R+A   L 
Sbjct: 166 ---------LTTADLEEVIKRALNHPAAFPELEVDCQPDAIHLIAQFANGDARVALNTLE 216

Query: 228 RVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISA 287
                 +    K    E   + L  +    + +D+ D  +                 ISA
Sbjct: 217 MAVLNGQRDGKKVTITEQDLSQL--INTKSLRYDKHDEEH--------------YNIISA 260

Query: 288 GLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
                R++  D    +  +       P    R L+  A + +G+  
Sbjct: 261 LHKSMRNSDVDAAVYWCSRMLDGGEDPLYIARRLVRFASEDIGLAD 306


>gi|325144597|gb|EGC66896.1| magnesium chelatase, subunit ChlI family [Neisseria meningitidis
           M01-240013]
          Length = 436

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 71/333 (21%), Positives = 112/333 (33%), Gaps = 49/333 (14%)

Query: 12  VSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
             + DA +   LRP TL++  GQ       K    A +        +L  GPPG+GKTTL
Sbjct: 6   AREPDAPLAERLRPHTLDDVVGQEHLIGEGKPLRVAVE--GGKPHSMLLWGPPGVGKTTL 63

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEI 124
           A+++A+     F   S  V +   D+   +   E         +LF+DE+HR +   ++ 
Sbjct: 64  ARILAQSFNAQFLPVSA-VFSGVKDIREAIDKAEIALQQGRATILFVDEVHRFNKAQQDA 122

Query: 125 LYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             P +E   L  +    E PS       LSR  +             L  +         
Sbjct: 123 FLPHVESGLLTFIGATTENPSFEVNPALLSRAQVYVLQPLSSDDLKKLIAKVLALPEYQE 182

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           + IE         A+   +   D  A  +        R A    RR+++           
Sbjct: 183 FTIET-------DAQKLLVNTADGDARRLLNLLEQLLRAADT--RRLKNLTA-------- 225

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
                        D +G           I R   GG      ISA     R +  +    
Sbjct: 226 ---------EFLADSLGAQ---------IRRFDKGGESFYNQISALHKSVRGSHPNAALY 267

Query: 303 YMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +  +       PR   R ++ IAW+ +G+  P 
Sbjct: 268 WFCRMLDGGTDPRYLARRIVRIAWEDIGLADPR 300


>gi|303252682|ref|ZP_07338845.1| recombination factor protein RarA [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|302648650|gb|EFL78843.1| recombination factor protein RarA [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
          Length = 446

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 80/328 (24%), Positives = 120/328 (36%), Gaps = 51/328 (15%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           + +RPRTL E+ GQ       K    A +A       ++F GPPG GKTTLA+++A    
Sbjct: 17  ARMRPRTLAEYIGQAHLIGEGKPLRRAIEAGHS--HSMIFWGPPGTGKTTLAEIIAHHFD 74

Query: 80  VNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
                 S        I +A + A L      R +LF+DE+HR +   ++   P +ED  +
Sbjct: 75  AEVERLSAVTSGVKEIREAIERAKLNRQTGRRTLLFVDEVHRFNKSQQDAFLPHIEDGTI 134

Query: 135 DLM--VGEGPSARSVKINLSR-----FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
             +    E PS       LSR        + A     +LTN L D+              
Sbjct: 135 IFIGATTENPSFELNNALLSRAKIYILKPLQAVEIAQVLTNALYDK-------------- 180

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
                +RG       + D     +A    G  R A   L  + D AE++       +  +
Sbjct: 181 -----ERGLGNESYYIEDNVIELLADYVNGDARFALNCLELMSDMAEISPQG----KRLN 231

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
            ALL   + +              AR   GG    + ISA     R +  D    +  + 
Sbjct: 232 KALLAEVLGER------------QARFDKGGDRYYDLISALHKSVRGSSPDGALYWYARI 279

Query: 308 GFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                 P    R L+ IA + +G   P 
Sbjct: 280 LTAGGDPLYVARRLLAIASEDIGNADPR 307


>gi|54294651|ref|YP_127066.1| recombination factor protein RarA [Legionella pneumophila str.
           Lens]
 gi|53754483|emb|CAH15967.1| hypothetical protein lpl1728 [Legionella pneumophila str. Lens]
          Length = 434

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 65/333 (19%), Positives = 112/333 (33%), Gaps = 49/333 (14%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           N   +      LRP+ + E  GQ       K            L  ++  GPPG+GKTT+
Sbjct: 5   NKEPDPPLAESLRPQHINEVIGQSHLLGEGKPLR--LCFMGSKLHSMILWGPPGVGKTTI 62

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEI 124
           A++ A+     + + S  V +   D+ A +   ++      + +LFIDEIHR +   ++ 
Sbjct: 63  ARLTAQAFDCEWIALSA-VFSGVKDIRAAIEKAQEYLIHDKQTILFIDEIHRFNKAQQDA 121

Query: 125 LYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           L P  E   +  +    E PS       LSR  +             L  R         
Sbjct: 122 LLPYTESGLITFIGATTENPSFEVNPALLSRAQVYVLKLLSEQELKLLFLRAK------- 174

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
                     QR         T+EA   +   + G  R    LL + +          + 
Sbjct: 175 ----------QRALSSLQ--FTEEAMDFLISCADGDARRLLNLLEQTKTACLTIKTAVVD 222

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            E+    +++                    R   GG    + ISA     R +  D    
Sbjct: 223 VELLHNVIVQSG-----------------RRFDKGGEAFYDQISALHKSVRGSNPDAALY 265

Query: 303 YMIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
           ++ +       P    R ++ ++W+ +G+  P 
Sbjct: 266 WLCRMLDGGVDPYYLARRIIRMSWEDIGLADPK 298


>gi|33593454|ref|NP_881098.1| recombination factor protein RarA [Bordetella pertussis Tohama I]
 gi|33572810|emb|CAE42743.1| conserved hypothetical protein [Bordetella pertussis Tohama I]
 gi|332382863|gb|AEE67710.1| recombination factor protein RarA [Bordetella pertussis CS]
          Length = 446

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 68/327 (20%), Positives = 118/327 (36%), Gaps = 43/327 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRPRTL +  GQ       K    A    +     ++F GPPG+GKTTLA+++A 
Sbjct: 17  PLAERLRPRTLSDVVGQSHLLGPDKPLRVA--FDSGRPHSMIFWGPPGVGKTTLARLMAD 74

Query: 77  ELGVNFRSTSGPVIAKAGDL------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
                F + S  V+    D+      A +      R +LF+DE+HR +   ++   P +E
Sbjct: 75  GFDAQFIAISA-VLGGVKDIRDAVVTAQVAQGQGRRTILFVDEVHRFNKSQQDAFLPYVE 133

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
                 +    E PS       LSR  +    +        L DR    +     + + +
Sbjct: 134 SGLFTFIGATTENPSFEVNSALLSRARVYVLQSLSAEELMQLVDRAVAALNEGLEDGQQI 193

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +                EA  ++A  + G  R     +  V + A+ A   ++     + 
Sbjct: 194 R-------------FEAEAREQLAAWADGDARRLISAVEVVAESAQAAGRDSVDAAWLET 240

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           +L +                  + R   GG    + ISA     R +  D    ++ +  
Sbjct: 241 SLSQN-----------------LRRFDKGGDAFYDQISALHKSVRGSDPDAALYWLARML 283

Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIPH 333
                P+   R L+ +A + +G+  P 
Sbjct: 284 DGGADPKYLARRLVRMAIEDIGLADPR 310


>gi|56479430|ref|YP_161019.1| recombination factor protein RarA [Aromatoleum aromaticum EbN1]
 gi|56315473|emb|CAI10118.1| predicted ATPase related to the uncharacterized helicase subunit of
           the holliday junction resolvase [Aromatoleum aromaticum
           EbN1]
          Length = 446

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 77/340 (22%), Positives = 124/340 (36%), Gaps = 55/340 (16%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L              +RP TL E  GQ       K    A +  +  L  ++  GPPG+G
Sbjct: 4   LFDDVEPPRVPLAERMRPTTLAEVAGQRHLLGPGKPLRLAFE--SGKLHSMILWGPPGVG 61

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSII 120
           KTTLA+++A+     F + S  V +   D+   + + +         +LF+DE+HR +  
Sbjct: 62  KTTLARLMAQAFDAEFIALSA-VFSGVKDIREAVAHAQTEKARGRHTILFVDEVHRFNKA 120

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++   P +E   + L+    E PS       LSR            +  PL D      
Sbjct: 121 QQDAFLPYVEQGVVTLIGATTENPSFEVNSALLSRA--------AVYVLEPLDD------ 166

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTD---EAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
                  E    + +R A+L      +    A   +   + G  R    L+ +V+  AE 
Sbjct: 167 -------EAQGELFER-ARLLACPQLEFAPAARERMIGFADGDARRLMNLIEQVQVAAET 218

Query: 236 AHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDA 295
           A   T+T E  D AL                  T + R   GG    + ISA     R +
Sbjct: 219 AGVVTVTPEFVDEALS-----------------TRLRRFDKGGEAFYDQISALHKSVRGS 261

Query: 296 IEDLIEPYMIQQGFIQRT--PRGRLLMPIAWQHLGIDIPH 333
             D    ++ +           GR L+ +A + +G+  P 
Sbjct: 262 NPDAALYWLCRMLDGGADALYLGRRLIRMATEDIGLADPR 301


>gi|325128338|gb|EGC51222.1| magnesium chelatase, subunit ChlI family [Neisseria meningitidis
           N1568]
          Length = 436

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 71/333 (21%), Positives = 112/333 (33%), Gaps = 49/333 (14%)

Query: 12  VSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
             + DA +   LRP TL++  GQ       K    A +        +L  GPPG+GKTTL
Sbjct: 6   AREPDAPLAERLRPHTLDDVVGQEHLIGEGKPLRVAVE--GGKPHSMLLWGPPGVGKTTL 63

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEI 124
           A+++A+     F   S  V +   D+   +   E         +LF+DE+HR +   ++ 
Sbjct: 64  ARILAQSFNAQFLPVSA-VFSGVKDIREAIDKAEIALQQGRATILFVDEVHRFNKAQQDA 122

Query: 125 LYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             P +E   L  +    E PS       LSR  +             L  +         
Sbjct: 123 FLPHVESGLLTFIGATTENPSFEVNPALLSRAQVYVLQPLSSDDLKKLIAKVLALPEYQE 182

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           + IE         A+   +   D  A  +        R A    RR+++           
Sbjct: 183 FTIET-------DAQKLLVNTADGDARRLLNLLEQLLRAADT--RRLKNLTA-------- 225

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
                        D +G           I R   GG      ISA     R +  +    
Sbjct: 226 ---------EFLADSLGAQ---------IRRFDKGGESFYNQISALHKSVRGSHPNAALY 267

Query: 303 YMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +  +       PR   R ++ IAW+ +G+  P 
Sbjct: 268 WFCRMLDGGTDPRYLARRIVRIAWEDIGLADPR 300


>gi|218768257|ref|YP_002342769.1| recombination factor protein RarA [Neisseria meningitidis Z2491]
 gi|121052265|emb|CAM08593.1| hypothetical protein NMA1433 [Neisseria meningitidis Z2491]
          Length = 436

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 69/327 (21%), Positives = 108/327 (33%), Gaps = 48/327 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP TL++  GQ       K    A +        +L  GPPG+GKTTLA+++A+
Sbjct: 12  PLAERLRPHTLDDVVGQEHLIGEGKPLRVAVE--GGKPHSMLLWGPPGVGKTTLARILAQ 69

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAME 130
                F   S  V +   D+   +   E         +LF+DE+HR +   ++   P +E
Sbjct: 70  SFNAQFLPVSA-VFSGVKDIREAIDKAEIALQQGRATILFVDEVHRFNKAQQDAFLPHVE 128

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
              L  +    E PS       LSR  +             L  +         + IE  
Sbjct: 129 SGLLTFIGATTENPSFEVNPALLSRAQVYVLQPLSSDDLKKLIAKVLALPEYQEFTIET- 187

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
                  A+   +   D  A  +        R A    RR+++                 
Sbjct: 188 ------DAQKLLVNTVDGDARRLLNLLEQLLRAADT--RRLKNLTA-------------- 225

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
                  D +G           I R   GG      ISA     R +  +    +  +  
Sbjct: 226 ---EFLADSLGAQ---------IRRFDKGGESFYNQISALHKSVRGSHPNAALYWFCRML 273

Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIPH 333
                PR   R ++ IAW+ +G+  P 
Sbjct: 274 DGGTDPRYLARRIVRIAWEDIGLADPR 300


>gi|121606099|ref|YP_983428.1| recombination factor protein RarA [Polaromonas naphthalenivorans
           CJ2]
 gi|120595068|gb|ABM38507.1| Recombination protein MgsA [Polaromonas naphthalenivorans CJ2]
          Length = 432

 Score =  167 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 70/331 (21%), Positives = 117/331 (35%), Gaps = 54/331 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACS---NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
                LRP+ L E  GQ         L++  E+ +         +  GPPG+GKTT+A++
Sbjct: 9   PLAERLRPKNLGEVIGQQHLLGEGLPLRIAFESGE-----PHSCILWGPPGVGKTTIARL 63

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILY 126
           +A     +F + S  V+    D+   +            R ++F+DE+HR +   ++   
Sbjct: 64  MASSFDAHFITISA-VLGGVKDIREAVEQATIWQGQGGRRTIVFVDEVHRFNKSQQDAFL 122

Query: 127 PAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           P +E      +    E PS       LSR                      +   L    
Sbjct: 123 PHVESGLFTFIGATTENPSFEVNSALLSR---------------------AVVYVLQPLT 161

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            +DLK I+ R      L   +  A E   R         R L    +   VA        
Sbjct: 162 EDDLKQIIARVLSERALPAIETIAVEAVDRLVAYADGDARRLLNTLESLSVAARAEKITG 221

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           + DA LL++  ++             + R   GG    +TISA     R +  +    + 
Sbjct: 222 VTDAWLLKVLGER-------------LRRYDKGGEKFYDTISALHKSVRGSDPNAALYWF 268

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           ++       PR   R L+ +A + +G+  P 
Sbjct: 269 MRMLDGGAEPRYMARRLIRMASEDIGLADPR 299


>gi|52425453|ref|YP_088590.1| recombination factor protein RarA [Mannheimia succiniciproducens
           MBEL55E]
 gi|52307505|gb|AAU38005.1| unknown [Mannheimia succiniciproducens MBEL55E]
          Length = 449

 Score =  167 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 78/342 (22%), Positives = 127/342 (37%), Gaps = 48/342 (14%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M +  L S+N +Q     S LRP +L+EF GQ       KV  +      + L  ++F G
Sbjct: 10  MKQTSLFSQNNTQNQPLASRLRPTSLDEFVGQKHLLEPGKVLQQMIVQ--DELSSMIFWG 67

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHR 116
           P G+GKTTLAQ++A +    F + S  V     I K  + A     + ++ ++FIDEIHR
Sbjct: 68  PSGVGKTTLAQIIAHQTNAKFITFSAVVSGIKDIKKIMEEAETDREMGEKTIVFIDEIHR 127

Query: 117 LSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRF 174
            +   ++   P +E   + L+    E PS       LSR  +             L  + 
Sbjct: 128 FNKAQQDAFLPYVEKGSIILIGATTENPSFEINSALLSRCKVFVLEALSNNDIVLLL-KQ 186

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
            +     F  +E              +   ++    IA  + G  RIA   L       E
Sbjct: 187 ALNHPQAFIPLE--------------VNADEKLLQAIAEFANGDARIALNTLELAVKNVE 232

Query: 235 VAHAKTITREIADAALL---RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
                    E   A +L   ++  DK G +  ++                   ISA    
Sbjct: 233 KQGNSVHLSENLLADILNNRQIVYDKTGEEHYNI-------------------ISALHKA 273

Query: 292 PRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
            R++  D    ++ +       P    R L+  A + +G+  
Sbjct: 274 MRNSDPDAAIYWLSRMLEGGEDPVYIARRLIRFAGEDIGLAD 315


>gi|226324736|ref|ZP_03800254.1| hypothetical protein COPCOM_02522 [Coprococcus comes ATCC 27758]
 gi|225207184|gb|EEG89538.1| hypothetical protein COPCOM_02522 [Coprococcus comes ATCC 27758]
          Length = 155

 Score =  167 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 81/140 (57%), Positives = 109/140 (77%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M R  + + N+ ++    S LRP+ LE++ GQ +A   LK++IEAAK+R EALDHVLF G
Sbjct: 1   MGRRIITTENLEEDVKIESHLRPQLLEDYIGQAKAKETLKIYIEAAKSRGEALDHVLFYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPGLGKTTLA ++A E+GVN + TSGP I K G++AA+L NL++ DVLF+DEIHRL+  V
Sbjct: 61  PPGLGKTTLAGIIANEMGVNIKITSGPAIEKPGEMAAILNNLQEGDVLFVDEIHRLNRQV 120

Query: 122 EEILYPAMEDFQLDLMVGEG 141
           EE+LYPAMEDF +D+M+G+G
Sbjct: 121 EEVLYPAMEDFAIDIMIGKG 140


>gi|325142473|gb|EGC64877.1| magnesium chelatase, subunit ChlI family [Neisseria meningitidis
           961-5945]
 gi|325198390|gb|ADY93846.1| magnesium chelatase, subunit ChlI family [Neisseria meningitidis
           G2136]
          Length = 436

 Score =  167 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 71/333 (21%), Positives = 112/333 (33%), Gaps = 49/333 (14%)

Query: 12  VSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
             + DA +   LRP TL++  GQ       K    A +        +L  GPPG+GKTTL
Sbjct: 6   AREPDAPLAERLRPHTLDDVVGQEHLIGEGKPLRVAVE--GGKPHSMLLWGPPGVGKTTL 63

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEI 124
           A+++A+     F   S  V +   D+   +   E         +LF+DE+HR +   ++ 
Sbjct: 64  ARILAQSFNAQFLPVSA-VFSGVKDIRGAIDKAEIALQQGRATILFVDEVHRFNKAQQDA 122

Query: 125 LYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             P +E   L  +    E PS       LSR  +             L  +         
Sbjct: 123 FLPHVESGLLTFIGATTENPSFEVNPALLSRAQVYVLQPLSSDDLKKLIAKVLALPEYQE 182

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           + IE         A+   +   D  A  +        R A    RR+++           
Sbjct: 183 FTIET-------DAQKLLVNTADGDARRLLNLLEQLLRAADT--RRLKNLTA-------- 225

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
                        D +G           I R   GG      ISA     R +  +    
Sbjct: 226 ---------EFLADSLGAQ---------IRRFDKGGESFYNQISALHKSVRGSHPNAALY 267

Query: 303 YMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +  +       PR   R ++ IAW+ +G+  P 
Sbjct: 268 WFCRMLDGGTDPRYLARRIVRIAWEDIGLADPR 300


>gi|121634950|ref|YP_975195.1| recombination factor protein RarA [Neisseria meningitidis FAM18]
 gi|120866656|emb|CAM10407.1| hypothetical protein NMC1159 [Neisseria meningitidis FAM18]
 gi|325132559|gb|EGC55252.1| magnesium chelatase, subunit ChlI family [Neisseria meningitidis
           M6190]
 gi|325138333|gb|EGC60902.1| magnesium chelatase, subunit ChlI family [Neisseria meningitidis
           ES14902]
          Length = 436

 Score =  167 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 71/333 (21%), Positives = 112/333 (33%), Gaps = 49/333 (14%)

Query: 12  VSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
             + DA +   LRP TL++  GQ       K    A +        +L  GPPG+GKTTL
Sbjct: 6   AREPDAPLAERLRPHTLDDVVGQEHLIGEGKPLRVAVE--GGKPHSMLLWGPPGVGKTTL 63

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEI 124
           A+++A+     F   S  V +   D+   +   E         +LF+DE+HR +   ++ 
Sbjct: 64  ARILAQSFNAQFLPVSA-VFSGVKDIREAIDKAEIALQQGRATILFVDEVHRFNKAQQDA 122

Query: 125 LYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             P +E   L  +    E PS       LSR  +             L  +         
Sbjct: 123 FLPHVESGLLTFIGATTENPSFEVNPALLSRAQVYVLQPLSSDDLKKLIAKVLALPEYQE 182

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           + IE         A+   +   D  A  +        R A    RR+++           
Sbjct: 183 FTIET-------DAQKLLVNTADGDARRLLNLLEQLLRAADT--RRLKNLTA-------- 225

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
                        D +G           I R   GG      ISA     R +  +    
Sbjct: 226 ---------EFLADSLGAQ---------IRRFDKGGESFYNQISALHKSVRGSHPNAALY 267

Query: 303 YMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +  +       PR   R ++ IAW+ +G+  P 
Sbjct: 268 WFCRMLDGGTDPRYLARRIVRIAWEDIGLADPR 300


>gi|225574529|ref|ZP_03783139.1| hypothetical protein RUMHYD_02606 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038260|gb|EEG48506.1| hypothetical protein RUMHYD_02606 [Blautia hydrogenotrophica DSM
           10507]
          Length = 439

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 83/344 (24%), Positives = 131/344 (38%), Gaps = 44/344 (12%)

Query: 2   MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD          +E++ + S LRP TLEE  GQ       K+   A KA  + L  ++F 
Sbjct: 1   MDLFEYAKEKAMEEESPLASRLRPSTLEEVVGQTHIVGKDKLLYRAIKA--DKLSSIIFY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDE 113
           GPPG GKTTLA+V+A     NF   +  V A   D+ A++   +        + +LFIDE
Sbjct: 59  GPPGTGKTTLAKVIANTTSANFTQINATV-AGKKDMEAVIKQAQNDRGMFGKKTILFIDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++ L P +ED  + L+    E P        LSR                  
Sbjct: 118 IHRFNKGQQDYLLPFVEDGTIILIGATTENPYFEVNGALLSR------------------ 159

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
               +   L   E E++KT+++R  K     + +  A            +AG   R   +
Sbjct: 160 ---SVIFELKQLEKEEIKTLIRRAVKDPVKGMGNYHADLDEDALEFLADMAGGDARTALN 216

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
             E+    T   +             +  +         + R   GG    + ISA +  
Sbjct: 217 AIELGILTTQRSD--------DGRIHITLEVAQECIQKRVVRYDKGGDNHYDIISAFIKS 268

Query: 292 PRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            R +  D    Y+ +  +     +   R +M  A + +G   PH
Sbjct: 269 MRGSDPDAAVYYLAKMLYAGEDVKFIARRIMICASEDVGNADPH 312


>gi|257065126|ref|YP_003144798.1| Recombination protein MgsA [Slackia heliotrinireducens DSM 20476]
 gi|256792779|gb|ACV23449.1| Recombination protein MgsA [Slackia heliotrinireducens DSM 20476]
          Length = 439

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 78/344 (22%), Positives = 131/344 (38%), Gaps = 53/344 (15%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           +E L   ++   +   + LRP +L+E+ GQ       KV  +  +A  + +  ++F GPP
Sbjct: 2   QESLFQEDIP--EPLAARLRPLSLDEYAGQKHLVGEGKVLRKLIEA--DQVSSMIFWGPP 57

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFIDEIHRL 117
           G+GKTTLAQ++A +    F + S  V +   ++  ++        L ++ +LF+DEIHR 
Sbjct: 58  GVGKTTLAQIIAHQTNAKFVNFSA-VTSGIKEIRQVMKQAENNRSLGEKTILFVDEIHRF 116

Query: 118 SIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
           +   ++   P +E   + L+    E PS       LSR  +             L DR  
Sbjct: 117 NKAQQDAFLPFVEKGTIILIGATTENPSFEVNGALLSRCKVFVLKALETADLAELLDR-- 174

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
                             RG     + V+DE    IA  + G  R A   L  V    +V
Sbjct: 175 -------------AIHDPRGFGDQQVDVSDELLEAIATFANGDARTALSTLEMVVLNGDV 221

Query: 236 AHAKTI--TREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
                I  T E  +    R +   DK G +  ++                   ISA    
Sbjct: 222 DDEGVIHVTEETVEQCTERKSLLYDKHGEEHYNI-------------------ISALHKS 262

Query: 292 PRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            R++  D    ++ +       P    R +   A + +G+   H
Sbjct: 263 MRNSDPDAAVYWLARMLEAGEDPLYVARRITRFAAEDIGMADTH 306


>gi|261392480|emb|CAX50029.1| putative ATPase [Neisseria meningitidis 8013]
          Length = 436

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 71/333 (21%), Positives = 112/333 (33%), Gaps = 49/333 (14%)

Query: 12  VSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
             + DA +   LRP TL++  GQ       K    A +        +L  GPPG+GKTTL
Sbjct: 6   AREPDAPLAERLRPHTLDDVVGQEHLIGEGKPLRVAVE--GGKPHSMLLWGPPGVGKTTL 63

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEI 124
           A+++A+     F   S  V +   D+   +   E         +LF+DE+HR +   ++ 
Sbjct: 64  ARILAQSFNAQFLPVSA-VFSGVKDIRGAIDKAEIALQQGRATILFVDEVHRFNKAQQDA 122

Query: 125 LYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             P +E   L  +    E PS       LSR  +             L  +         
Sbjct: 123 FLPHVESGLLTFIGATTENPSFEVNPALLSRAQVYVLQPLSSDDLKKLIAKVLALPEYQE 182

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           + IE         A+   +   D  A  +        R A    RR+++           
Sbjct: 183 FTIET-------DAQKLLVNTADGDARRLLNLLEQLLRAADT--RRLKNLTA-------- 225

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
                        D +G           I R   GG      ISA     R +  +    
Sbjct: 226 ---------EFLADSLGAQ---------IRRFDKGGESFYNQISALHKSVRGSHPNAALY 267

Query: 303 YMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +  +       PR   R ++ IAW+ +G+  P 
Sbjct: 268 WFCRMLDGGTDPRYLARRIVRIAWEDIGLADPR 300


>gi|325204241|gb|ADY99694.1| magnesium chelatase, subunit ChlI family [Neisseria meningitidis
           M01-240355]
          Length = 436

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 70/333 (21%), Positives = 112/333 (33%), Gaps = 49/333 (14%)

Query: 12  VSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
             + DA +   LRP TL++  GQ       K    A +        +L  GPPG+GKTTL
Sbjct: 6   AREPDAPLAERLRPHTLDDVVGQEHLIGEGKPLRVAVE--GGKPHSMLLWGPPGVGKTTL 63

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEI 124
           A+++A+     F   S  V +   D+   +   E         +LF+DE+HR +   ++ 
Sbjct: 64  ARILAQSFNAQFLPVSA-VFSGVKDIRGAIDKAEIALQQGRATILFVDEVHRFNKAQQDA 122

Query: 125 LYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             P +E   L  +    E PS       LSR  +    +        L  +         
Sbjct: 123 FLPYVESGLLTFIGATTENPSFEVNPALLSRAQVYVLQSLSSDGLKKLIAKVLALPEYRD 182

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           + IE         A+   +   D  A  +                     A+    KT+T
Sbjct: 183 FTIEA-------DAQELLVNTADGDARRLLNLLEQL-----------LRAADTRRLKTLT 224

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            E    +L                    I R   GG      ISA     R +  +    
Sbjct: 225 AEFLADSLGAQ-----------------IRRFDKGGESFYNQISALHKSVRGSHPNAALY 267

Query: 303 YMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +  +       PR   R ++ +AW+ +G+  P 
Sbjct: 268 WFCRMLDGGTDPRYLARRIVRMAWEDIGLADPR 300


>gi|297538757|ref|YP_003674526.1| AAA ATPase central domain-containing protein [Methylotenera sp.
           301]
 gi|297258104|gb|ADI29949.1| AAA ATPase central domain protein [Methylotenera sp. 301]
          Length = 444

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 69/339 (20%), Positives = 121/339 (35%), Gaps = 51/339 (15%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            L + N   E      LRP+TL+E  GQ    +  K    A   ++  L  ++  GPPG+
Sbjct: 3   NLFTPN-QPEAPLAERLRPKTLDEVVGQSHLLAANKPLRLA--FQSGKLPSMILWGPPGV 59

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAA-------LLTNLEDRDVLFIDEIHRLS 118
           GKTTLA+++A     +F   S  V++   D+         +L     + +LF+DE+HR +
Sbjct: 60  GKTTLARLIANTAEADFIPISA-VLSGIKDIREAVERAELILQQHGRKTILFVDEVHRFN 118

Query: 119 IIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
              ++   P +E   +  +    E PS       LSR  +           + L DR   
Sbjct: 119 KGQQDAFLPFVESGLITFIGATTENPSFEVNSALLSRAQVFVLNALSEAELSLLLDRAQQ 178

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
            +  N                   + + D+   ++   + G  R     +  + + AE A
Sbjct: 179 LVAEN-------------------VKLADDVREQVLAYADGDARRLLNFVEGLFNAAEGA 219

Query: 237 HAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAI 296
               I        +                    + R   GG    + ISA     R + 
Sbjct: 220 GVTEIDEAFLQTTMASK-----------------LRRFDKGGEAFYDQISALHKSVRGSN 262

Query: 297 EDLIEPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
            D    + ++       P   GR ++ +A + +G+  P 
Sbjct: 263 PDAALYWFLRMIDGGADPLYLGRRIVRMAIEDIGLADPR 301


>gi|325660738|ref|ZP_08149366.1| hypothetical protein HMPREF0490_00098 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472812|gb|EGC76022.1| hypothetical protein HMPREF0490_00098 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 438

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 81/343 (23%), Positives = 132/343 (38%), Gaps = 44/343 (12%)

Query: 2   MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD    +     ++++ + S LRP+TLEE  GQ       K+   A KA  + L  ++F 
Sbjct: 1   MDLFDYMRETTKKKESPLASRLRPKTLEEVVGQQHIIGKDKLLYRAIKA--DKLSSIIFY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDE 113
           GPPG GKTTLA+V+A     NF   +  V A   D+  ++   +D       + +LF+DE
Sbjct: 59  GPPGTGKTTLAKVIANTTSANFTQINATV-AGKKDMEEVVRQAKDNQGMYGKKTILFVDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++ L P +ED  L L+    E P        +SR ++            PL+
Sbjct: 118 IHRFNKGQQDYLLPFVEDGTLILIGATTENPYFEVNGALISRSSIFEL--------KPLE 169

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
                 + +     E      +RG       + ++A   +A    G  R A   +     
Sbjct: 170 KEDIRKLIMRALTDE------ERGMGSYHAIIDEDALEFLADICGGDARNALNAIELGVL 223

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
             E +    I                   D +       + R   GG    +TISA +  
Sbjct: 224 TTERSEDGKIHIT---------------IDVVSECIQKRVVRYDKGGDNHYDTISAFIKS 268

Query: 292 PRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
            R +  D    Y+ +  +     +   R +M  A + +G   P
Sbjct: 269 MRGSDPDAAVFYLAKMLYAGEDVKFIARRIMICASEDVGNADP 311


>gi|298368871|ref|ZP_06980189.1| magnesium chelatase, subunit ChlI family [Neisseria sp. oral taxon
           014 str. F0314]
 gi|298282874|gb|EFI24361.1| magnesium chelatase, subunit ChlI family [Neisseria sp. oral taxon
           014 str. F0314]
          Length = 435

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 68/331 (20%), Positives = 108/331 (32%), Gaps = 48/331 (14%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
             +      LRP TL++  GQ       K    A +        +L  GPPG+GKTTLA+
Sbjct: 8   QPDAPLAERLRPHTLDDVIGQQHLIGEGKPLRVAVE--GGKPHSMLLWGPPGVGKTTLAR 65

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILY 126
           ++A+     F   S  V +   D+   +   E         +LF+DE+HR +   ++   
Sbjct: 66  ILAQSFNAQFLPVSA-VFSGVKDIREAIDKAEIALQQGRTTILFVDEVHRFNKAQQDAFL 124

Query: 127 PAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           P +E   L  +    E PS       LSR  +             L  +         + 
Sbjct: 125 PHVESGLLTFIGATTENPSFEVNPALLSRAQVYVLQFLSSDDLKKLIAKVLALPEYRDFT 184

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           IE         A+   +   D  A  +                     A+    KT+T E
Sbjct: 185 IEA-------DAQELLVNTADGDARRLLNLLEQL-----------LRAADTRRLKTLTAE 226

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
               +L                    I R   GG      ISA     R +  +    + 
Sbjct: 227 FLADSLGAQ-----------------IRRFDKGGESFYNQISALHKSVRGSHPNAALYWF 269

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +       PR   R ++ +AW+ +G+  P 
Sbjct: 270 CRMLDGGTDPRYLARRIVRMAWEDIGLADPR 300


>gi|261856111|ref|YP_003263394.1| ATPase AAA [Halothiobacillus neapolitanus c2]
 gi|261836580|gb|ACX96347.1| AAA ATPase central domain protein [Halothiobacillus neapolitanus
           c2]
          Length = 433

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 76/327 (23%), Positives = 115/327 (35%), Gaps = 49/327 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP T +E  GQ       K    A +AR      ++  GPPG+GKTTLA+++A+
Sbjct: 12  PLAEALRPHTPDEVIGQTHLLGEGKPLRLAFEAR--KPHSMILWGPPGVGKTTLARLMAK 69

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAME 130
               +F + S  V +   D+ A +   E         +LFIDEIHR +   ++ L P  E
Sbjct: 70  AFDSSFIALSA-VFSGVKDIRAAMDEAERNLALGHPTLLFIDEIHRFNKAQQDALLPYAE 128

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
              + L+    E PS       LSR  +    +        L  R               
Sbjct: 129 SGLVTLIGATTENPSFEVNSALLSRAQVYVLKSLSDDELRLLFTRAQDKA---------- 178

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
                    L  L    EA   +   + G  R    LL ++   A  +    IT    D 
Sbjct: 179 ---------LGHLQFDPEAIDAVIGLADGDARRLLNLLEQLNTAASTSKRTQITTAFIDN 229

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL +                    R   GG    + ISA     R +  D    ++ +  
Sbjct: 230 ALNQST-----------------RRFDKGGEHFYDQISALHKSVRGSHPDAALYWLTRML 272

Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIPH 333
                 R   R ++ +AW+ +G+  P 
Sbjct: 273 DGGADARYLARRIVRMAWEDIGLADPR 299


>gi|165975898|ref|YP_001651491.1| recombination factor protein RarA [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|165875999|gb|ABY69047.1| putative ATPase [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
          Length = 428

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 80/326 (24%), Positives = 120/326 (36%), Gaps = 51/326 (15%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRTL E+ GQ       K    A +A       ++F GPPG+GKTTLA+++A      
Sbjct: 1   MRPRTLAEYIGQAHLIGEGKPLRRAIEAGHS--HSMIFWGPPGIGKTTLAEIIAHHFDAE 58

Query: 82  FRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
               S        I +A + A L      R +LF+DE+HR +   ++   P +ED  +  
Sbjct: 59  VERLSAVTSGVKEIREAIERAKLNRQTGRRTLLFVDEVHRFNKSQQDAFLPHIEDGTIIF 118

Query: 137 M--VGEGPSARSVKINLSR-----FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           +    E PS       LSR        + A     +LTN L D+                
Sbjct: 119 IGATTENPSFELNNALLSRAKIYILKPLQAVEIAQVLTNALYDK---------------- 162

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
              +RG       + D     +A    G  R A   L  + D AE++       +  + A
Sbjct: 163 ---ERGLGNESYYIEDNVIELLADYVNGDARFALNCLELMSDMAEISPQG----KHLNKA 215

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           LL   + +              AR   GG    + ISA     R +  D    +  +   
Sbjct: 216 LLAEVLGER------------QARFDKGGDRYYDLISALHKSVRGSSPDGALYWYARILT 263

Query: 310 IQRTPR--GRLLMPIAWQHLGIDIPH 333
               P    R L+ IA + +G   P 
Sbjct: 264 AGGDPLYVARRLLAIASEDIGNADPR 289


>gi|253580175|ref|ZP_04857442.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848694|gb|EES76657.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 439

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 81/344 (23%), Positives = 129/344 (37%), Gaps = 44/344 (12%)

Query: 2   MDREGLL-SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD      S+ + QE    S LRP TL+E  GQ        +   A KA  + L  V+F 
Sbjct: 1   MDLFEYAKSKTLDQESPLASRLRPTTLDEVVGQQHIIGKNTLLYRAIKA--DKLTSVIFY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDE 113
           GPPG GKTTLA+V+A      F   +  V A   D+ A++   +        + +LFIDE
Sbjct: 59  GPPGTGKTTLAKVIANTTSAEFTQINATV-AGKKDMEAVVKEAQQNLGMYGKKTILFIDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++ L P +ED  + L+    E P        +SR                  
Sbjct: 118 IHRFNKGQQDYLLPFVEDGTIILIGATTENPYFEVNAALISR------------------ 159

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
               I   L   EI ++K ++ R        + +  A            +AG   R   +
Sbjct: 160 ---SIIFELKSLEISEVKELILRAVNDKTKGMGNYKARIDEDALDFLADMAGGDARNALN 216

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
             E+     +T   ++  L+ +       D         + R    G    + ISA +  
Sbjct: 217 AIEL---GILTTPRSEDGLIHIT-----LDVASQCIQKRVVRYDKNGDNHYDIISAFIKS 268

Query: 292 PRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            R +  D    Y+ +  +     +   R +M +A + +G   P 
Sbjct: 269 MRGSDPDAAVYYLAKMLYAGEDVKFIARRIMILASEDIGNADPQ 312


>gi|160893315|ref|ZP_02074102.1| hypothetical protein CLOL250_00864 [Clostridium sp. L2-50]
 gi|156865007|gb|EDO58438.1| hypothetical protein CLOL250_00864 [Clostridium sp. L2-50]
          Length = 438

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 82/348 (23%), Positives = 137/348 (39%), Gaps = 53/348 (15%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD    +  N   +D+ ++  +RP  L+E  GQ       K+   A KA  + L  ++F 
Sbjct: 1   MDLFDYMRENQKDDDSPLAKRMRPENLDEVIGQEHIIGKNKLLYRAIKA--DKLGSLIFY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDE 113
           GPPG GKTTLA V+A     +F+  +    +   D+  ++   +        R +LFIDE
Sbjct: 59  GPPGTGKTTLAMVIAHTTKADFKQINA-TTSGKKDMEQIIEEAKNTKAMYGRRTILFIDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++ L P +ED  + L+    E P        +SR       + +  L    +
Sbjct: 118 IHRFNKSQQDYLLPFVEDGTIILIGATTENPYFEVNGALISR-------SNIFELKPLSK 170

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
           +     I    Y+        Q+G     + + D+A   ++  S G  R A   +     
Sbjct: 171 ENIKDIILKAVYD--------QKGMGAFNVCIDDDAVEFLSDMSEGDARSALNAVELGVL 222

Query: 232 FAEVAHAKT--ITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISA 287
            +E A      IT  +A+  + R A   DK G +  D+                   ISA
Sbjct: 223 SSEPAADGRIHITLAVAEECIQRRALRYDKDGDNHYDI-------------------ISA 263

Query: 288 GLSEPRDAIEDLIEPYMIQQGFIQR--TPRGRLLMPIAWQHLGIDIPH 333
            +   R +  D    Y+ +  +     T   R +M  A + +G   P+
Sbjct: 264 FIKSMRGSDPDAAVFYLAKMLYGGESITFIARRIMICACEDVGNADPN 311


>gi|320159500|ref|YP_004172724.1| putative ATPase [Anaerolinea thermophila UNI-1]
 gi|319993353|dbj|BAJ62124.1| putative ATPase [Anaerolinea thermophila UNI-1]
          Length = 463

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 80/339 (23%), Positives = 129/339 (38%), Gaps = 50/339 (14%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
             +  E    + LRPRT +E  GQ       K+   A +        ++  GPPG GKTT
Sbjct: 10  EQMKSEAPLAARLRPRTFDEMVGQEHIIGPGKLLRRAIET-DRLFSSIILWGPPGTGKTT 68

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVE 122
           LAQ++A+    +F   S  V+A   DL  ++   E+       R +LF+DE+HR +   +
Sbjct: 69  LAQLIAQYTQAHFEVISA-VLAGVPDLRRVIQEAEERRKLYRRRTILFVDEVHRWNKAQQ 127

Query: 123 EILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           + L P +E   + L+    E P    +   +SR  +           + L DR       
Sbjct: 128 DALLPHVESGMITLVGATTENPYFEVISALVSRSRIFQLLPLEEHHLSILFDR------- 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA--EVAHA 238
                    +  +RG     + V  EA   +   S G  R     L    +    +    
Sbjct: 181 -------ALSDPERGYGKISVQVDPEARAHLIRVSGGDARNLLNALELAVESTPPDENGV 233

Query: 239 KTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAI 296
           + IT ++A  ++ R A   DK G    D                   TISA +   R + 
Sbjct: 234 RHITLDVAQESIQRRAVLYDKNGDAHYD-------------------TISAFIKSVRGSD 274

Query: 297 EDLIEPYMIQQGFIQRTPRG--RLLMPIAWQHLGIDIPH 333
            D    ++ +       PR   R L+ +A + +G+  PH
Sbjct: 275 PDAALYWLAKMLAAGEDPRFILRRLIILAGEDIGLADPH 313


>gi|90579109|ref|ZP_01234919.1| putative ATPase protein [Vibrio angustum S14]
 gi|90439942|gb|EAS65123.1| putative ATPase protein [Vibrio angustum S14]
          Length = 446

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 81/342 (23%), Positives = 129/342 (37%), Gaps = 53/342 (15%)

Query: 8   LSRNVSQE-DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
            S + S +     + +RPRT+EE+ GQ       K    A +     L  ++  GPPG G
Sbjct: 4   FSLDFSSDFRPLAARMRPRTVEEYIGQQHILGQGKPLRRALE--GGQLHSMILWGPPGTG 61

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALL------TNLEDRDVLFIDEIHRLSII 120
           KTTLA+V A          S  V +   D+ A +           R +LF+DE+HR +  
Sbjct: 62  KTTLAEVAAHYANAEVERVSA-VTSGIKDIRAAIDKARDNKMAGRRTILFVDEVHRFNKS 120

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++   P +ED  +  +    E PS       LSR  +    +        L+D   + +
Sbjct: 121 QQDAFLPHIEDGTVTFIGATTENPSFELNNALLSRARVYKLKS--------LEDDEILQV 172

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
                 IE   T  +RG   T +   D+   ++A   RG  R++   L ++ D AE    
Sbjct: 173 ------IEQALTDKERGVSETNIHFADDIKEKLAEFVRGDARMSLNYLEQLIDMAEE--- 223

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYL-----TMIARNFGGGPVGIETISAGLSEPR 293
                            D+ G  Q+ +  L       +AR    G +  + ISA     R
Sbjct: 224 -----------------DEKGIKQITVELLAEVTGEKVARFDNKGDLWYDMISAVHKSIR 266

Query: 294 DAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +  D    +  +       P    R L+ IA + +G   P 
Sbjct: 267 GSNPDGALYWFARMLQAGCDPLYVARRLLAIASEDIGNADPR 308


>gi|91782394|ref|YP_557600.1| recombination factor protein RarA [Burkholderia xenovorans LB400]
 gi|296162243|ref|ZP_06845038.1| AAA ATPase central domain protein [Burkholderia sp. Ch1-1]
 gi|91686348|gb|ABE29548.1| Recombination protein MgsA [Burkholderia xenovorans LB400]
 gi|295887510|gb|EFG67333.1| AAA ATPase central domain protein [Burkholderia sp. Ch1-1]
          Length = 437

 Score =  167 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 71/337 (21%), Positives = 118/337 (35%), Gaps = 52/337 (15%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           +             LRPR ++E  GQ       K     A    EA   ++  GPPG+GK
Sbjct: 1   MFEETRANVPLAERLRPRNIDEVIGQKHLLGPNKPL-RVAFESGEA-HSMILWGPPGVGK 58

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIV 121
           TTLA+++A      F + S  V++   D+   +   +       + ++F+DE+HR +   
Sbjct: 59  TTLARLMADAFHAEFIALSA-VLSGVKDIREAVETAQIHRANGHQTLVFVDEVHRFNKSQ 117

Query: 122 EEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           ++   P +E      +    E PS       LSR  +    +                  
Sbjct: 118 QDAFLPHVESGLFVFVGATTENPSFEVNSALLSRAAVYVLKS------------------ 159

Query: 180 LNFYEIEDLKTIVQRGAKLT-GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
                 E+ + +++R  K   GL  TDEA   +   + G  R     L  V   A     
Sbjct: 160 ---LTDEEQRELLERAQKELGGLTFTDEARDALIGSADGDGRKLLNNLEIVARAASQQKT 216

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             I   +  +AL                    + R   GG    + ISA     R +  D
Sbjct: 217 TEIDGALLGSALAEN-----------------LRRFDKGGDAFYDQISALHKSVRGSSPD 259

Query: 299 LIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
               +  +       PR   R ++ +AW+ +G+  P 
Sbjct: 260 GALYWFCRMLDGGADPRYLARRIVRMAWEDIGLADPR 296


>gi|323486280|ref|ZP_08091606.1| hypothetical protein HMPREF9474_03357 [Clostridium symbiosum
           WAL-14163]
 gi|323693929|ref|ZP_08108116.1| replication-associated recombination protein A [Clostridium
           symbiosum WAL-14673]
 gi|323400390|gb|EGA92762.1| hypothetical protein HMPREF9474_03357 [Clostridium symbiosum
           WAL-14163]
 gi|323502026|gb|EGB17901.1| replication-associated recombination protein A [Clostridium
           symbiosum WAL-14673]
          Length = 440

 Score =  167 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 84/344 (24%), Positives = 139/344 (40%), Gaps = 44/344 (12%)

Query: 2   MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD    +  N  +++A + S LRP TL+E  GQ       K+   A KA  + L  ++F 
Sbjct: 1   MDLFDYMRSNTMEKEAPLASRLRPATLDEVVGQKHIIGKDKLLYRAIKA--DKLGSIIFY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDE 113
           GPPG GKTTLA+V+A      F+  +  V A   D+  ++   +D       + +LF+DE
Sbjct: 59  GPPGTGKTTLAKVIAGTTSARFKQLNATV-AGKKDMEEVVQEAKDALGMYGQKTILFVDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++ L P +ED  L L+    E P        +SR       +R+  L    +
Sbjct: 118 IHRFNKSQQDYLLPFVEDGTLLLIGATTENPYFEVNGALISR-------SRIFELKPLAK 170

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
           +     +R   Y+ E       +G       +++EA   +A  + G  R A   +     
Sbjct: 171 EDVAELLRRAVYDKE-------KGMGSYKADISEEAVDFLADMAGGDARAALNAVEL--- 220

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
                    +T E ++  L+ +       D           R   GG    +TISA +  
Sbjct: 221 -------GILTTERSEDGLIHIT-----LDVAQECIQKRAVRYDKGGDNHYDTISAFIKS 268

Query: 292 PRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            R +  D    Y+ +  +     +   R +M  A + +G   P 
Sbjct: 269 MRGSDPDAAVYYLARMLYAGEDIKFIARRIMICASEDVGNADPQ 312


>gi|313904153|ref|ZP_07837532.1| AAA ATPase central domain protein [Eubacterium cellulosolvens 6]
 gi|313470955|gb|EFR66278.1| AAA ATPase central domain protein [Eubacterium cellulosolvens 6]
          Length = 488

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 78/343 (22%), Positives = 122/343 (35%), Gaps = 44/343 (12%)

Query: 2   MDREGLL-SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD    + ++N   E    S +RP TLEE  GQ       ++   A KA  + L  ++F 
Sbjct: 1   MDLFEYMATQNKENESPLASRMRPETLEEVVGQEHIIGKGRMLYRAIKA--DKLSSIIFY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDE 113
           GPPG GKTTLA+V+A      F   +    +   D+ A +   ++R        +LFIDE
Sbjct: 59  GPPGTGKTTLARVIANTTSAEFAQMNA-TTSGKKDMEAAVKEAQNRRGMYGKKTILFIDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++ L P +ED  + L+    E P        +SR  +             L 
Sbjct: 118 IHRFNKGQQDFLLPYVEDGTVILIGATTENPYFEVNTALISRSVVFELKPLEKEDVRKLL 177

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R                    +G       +  EAA  +A  + G  R A   +     
Sbjct: 178 LR--------------AVEDPVKGLGSYHAVLEPEAADFLADMAGGDARAALNAIELGVL 223

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
             E +    I  +                D         + R    G    +TISA +  
Sbjct: 224 TTEPSEDGRIHID---------------LDTASECIQKRVLRYDKTGDQHYDTISAFIKS 268

Query: 292 PRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
            R +  D    Y+ +  +     +   R +M  A + +G   P
Sbjct: 269 MRGSDPDAAVYYLAKMLYAGEDIKFIARRIMICASEDVGNADP 311


>gi|254449265|ref|ZP_05062712.1| ATPase, AAA family [gamma proteobacterium HTCC5015]
 gi|198261120|gb|EDY85418.1| ATPase, AAA family [gamma proteobacterium HTCC5015]
          Length = 443

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 77/342 (22%), Positives = 124/342 (36%), Gaps = 51/342 (14%)

Query: 7   LLSRNVSQ----EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           L S   +Q           LRPR LE++ GQ    +  K   +A +  ++ L  ++F GP
Sbjct: 5   LFSEQEAQSTQANRPLADRLRPRRLEDYCGQQHLIAPGKPLRKAIE--SDQLHSMIFWGP 62

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIH 115
           PG GKTTLA+++A      F + S  V++   D+ A +   + R        VLF+DE+H
Sbjct: 63  PGTGKTTLARLIAEYCDAEFMTLSA-VLSGVKDIRAAVDEAKLRRRQDGRATVLFVDEVH 121

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P +ED  +  +    E PS       LSR       +        + DR
Sbjct: 122 RFNKSQQDAFLPHIEDGTIFFVGATTENPSFELNNALLSRVRTYVLKSFDDDDIEQIVDR 181

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                              + G    G+ +  EA   +   + G  R    LL    DF 
Sbjct: 182 --------------ALQDERDGLGQLGVRLEPEARELLLRSADGDARKVLNLLEVSADFT 227

Query: 234 EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
           E      + +    +A+     DK                   GG +  + ISA     R
Sbjct: 228 ERGGVIGVRQMREVSAVSLRRFDK-------------------GGDLFYDQISALHKSVR 268

Query: 294 DAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +  D    +  +       P    R L+ +A + +G   P 
Sbjct: 269 GSSPDGALYWFCRMIDGGCDPLYIARRLIRMASEDIGNADPR 310


>gi|309378598|emb|CBX22776.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 436

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 72/333 (21%), Positives = 115/333 (34%), Gaps = 49/333 (14%)

Query: 12  VSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           V + DA +   LRP TL++  GQ       K    A +        +L  GPPG+GKTTL
Sbjct: 6   VREPDAPLAERLRPHTLDDVVGQEHLIGEGKPLRVAVE--GGKPHSMLLWGPPGVGKTTL 63

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEI 124
           A+++A+     F   S  V +   D+   +   E         +LF+DE+HR +   ++ 
Sbjct: 64  ARILAQSFNAQFLPVSA-VFSGVKDIRGAIDKAEIALQQGRATILFVDEVHRFNKAQQDA 122

Query: 125 LYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             P +E+  L  +    E PS       LSR  +    +        L  +         
Sbjct: 123 FLPYVENGLLTFIGATTENPSFEVNPALLSRAQVYVLQSLSSDGLKKLIAKVLALPEYQE 182

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           + IE         A+   +   D  A  +        R A    RR+++           
Sbjct: 183 FTIEA-------DAQELLVNTADGDARRLLNLLEQLLRAADT--RRLKNLTA-------- 225

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
                        D +G           I R   GG      ISA     R +  +    
Sbjct: 226 ---------EFLADSLGAQ---------IRRFDKGGESFYNQISALHKSVRGSHPNAALY 267

Query: 303 YMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +  +       PR   R ++ IAW+ +G+  P 
Sbjct: 268 WFCRMLDGGTDPRYLARRIVRIAWEDIGLADPR 300


>gi|288939849|ref|YP_003442089.1| AAA ATPase central domain-containing protein [Allochromatium
           vinosum DSM 180]
 gi|288895221|gb|ADC61057.1| AAA ATPase central domain protein [Allochromatium vinosum DSM 180]
          Length = 435

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 76/327 (23%), Positives = 114/327 (34%), Gaps = 49/327 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRPR L+E  GQ       K    A ++       ++  GPPG+GKTTLA++ A+
Sbjct: 12  PLAEALRPRVLDEVIGQSHLLGEGKPLRLAFQSGQA--HSMILWGPPGVGKTTLARLTAQ 69

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAME 130
                F + S  V A   D+ A +   E       R +LF+DEIHR +   ++ L P +E
Sbjct: 70  AFAGEFIALSA-VFAGVKDIRAAMEQAEHHRSRGRRTILFVDEIHRFNKAQQDALLPYVE 128

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
              + L+    E PS       LSR  +    +        L  R               
Sbjct: 129 SGLVTLIGATTENPSFEVNAALLSRAQVYVLQSLTDAELRQLLMR--------------- 173

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
                R   LT L     A   +   + G  R    LL +    A  A    I     + 
Sbjct: 174 ----ARDQVLTHLQFDAAAVDTLIGYADGDARRCLNLLEQCHIAAGTAGVTCIDAGFIEN 229

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL   +                  R   GG    + ISA     R +  D    ++ +  
Sbjct: 230 ALTLNS-----------------RRFDQGGDGFYDQISALHKSVRGSNPDAALYWLTRML 272

Query: 309 FIQRTP--RGRLLMPIAWQHLGIDIPH 333
                P    R ++ +AW+ +G+  P 
Sbjct: 273 DGGADPHYLSRRIVRMAWEDIGLADPR 299


>gi|226323883|ref|ZP_03799401.1| hypothetical protein COPCOM_01658 [Coprococcus comes ATCC 27758]
 gi|225207432|gb|EEG89786.1| hypothetical protein COPCOM_01658 [Coprococcus comes ATCC 27758]
          Length = 450

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 77/344 (22%), Positives = 129/344 (37%), Gaps = 44/344 (12%)

Query: 1   MMDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           +MD    +     ++++ + S LRP TL+E  GQ       K+   A KA  + L  V+F
Sbjct: 11  LMDLFDYMRETTKEKESPLASRLRPTTLDEVVGQQHIIGKDKLLYRAIKA--DKLSSVIF 68

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFID 112
            GPPG GKTTLA+V+A      F   +  V A   D+  ++   ++       R +LFID
Sbjct: 69  YGPPGTGKTTLAKVIANTTSAEFTQINATV-AGKKDMEEVVNKAKELKGMYQKRTILFID 127

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           EIHR +   ++ L P +ED  + L+    E P        LSR ++              
Sbjct: 128 EIHRFNKGQQDYLLPFVEDGTIILIGATTENPYFEVNGALLSRSSVFEL----------- 176

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
                          E+++T++ R  +     +    A            +AG   R   
Sbjct: 177 ----------RPLSQEEVETLILRAVQDEKKGMGSYHAVIEEDALHFLADLAGGDARSAL 226

Query: 231 DFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
           +  E+    T   E          +  +  +         + R    G    +TISA + 
Sbjct: 227 NAVELGILTTPRSE--------DGMIHITLEVASECIQKRVVRYDKTGDNHYDTISAFIK 278

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
             R +  D    Y+ +  +     +   R +M  A + +G   P
Sbjct: 279 SMRGSDPDAAVYYLAKMLYAGEDIKFIARRIMICASEDVGNADP 322


>gi|167745397|ref|ZP_02417524.1| hypothetical protein ANACAC_00088 [Anaerostipes caccae DSM 14662]
 gi|167655118|gb|EDR99247.1| hypothetical protein ANACAC_00088 [Anaerostipes caccae DSM 14662]
          Length = 439

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 82/343 (23%), Positives = 132/343 (38%), Gaps = 42/343 (12%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD      +  S+++A ++  +RP+TL+E  GQ       K+   A +A  + L  ++F 
Sbjct: 1   MDLFDYARQKNSRKEAPLAGRMRPKTLDEVVGQEHIIGKDKLLYRAIQA--DKLSSIIFY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRDVLFIDEI 114
           GPPG GKTTLA+V+A+    NF   +     K        +    L   + + +LFIDEI
Sbjct: 59  GPPGTGKTTLARVIAQTTQANFVQMNATTSGKKEMQEAVKEAKEALGMFQKKTILFIDEI 118

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++ L P +ED  + L+    E P     +  +SR  +    +        L  
Sbjct: 119 HRFNKAQQDFLLPFVEDGTIILIGATTENPYFEVNQALISRSNVFELKSLEPEDIKKLLV 178

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R                T  ++G  +    +TDEA   +A  + G  R A   +      
Sbjct: 179 R--------------AVTDDEKGMGIYRAKITDEALDFLADMAEGDARSALNAVELGILT 224

Query: 233 AEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEP 292
            E      I  +I  A   +  I K             + R   GG    + ISA +   
Sbjct: 225 TEPGENGEIVIDINVA---QECIQKR------------VMRYDKGGDNHYDIISAFIKSM 269

Query: 293 RDAIEDLIEPYMIQQGFIQR--TPRGRLLMPIAWQHLGIDIPH 333
           R +  D    Y+ +        T   R +M  A + +G   P 
Sbjct: 270 RGSDPDAAVYYLARMIDAGESVTFISRRIMICASEDVGNADPQ 312


>gi|323525162|ref|YP_004227315.1| MgsA AAA+ ATPase-like protein [Burkholderia sp. CCGE1001]
 gi|323382164|gb|ADX54255.1| MgsA AAA+ ATPase-like protein [Burkholderia sp. CCGE1001]
          Length = 437

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 70/337 (20%), Positives = 119/337 (35%), Gaps = 52/337 (15%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           +             LRPR ++E  GQ       K     A    EA   ++  GPPG+GK
Sbjct: 1   MFEETRANVPLAERLRPRNIDEVIGQKHLLGPNKPL-RVAFESGEA-HSMILWGPPGVGK 58

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIV 121
           TTLA+++A      F + S  V++   D+   +   +       + ++F+DE+HR +   
Sbjct: 59  TTLARLMADAFHAQFIALSA-VLSGVKDIREAVETAQIHRANGHQTLVFVDEVHRFNKSQ 117

Query: 122 EEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           ++   P +E      +    E PS       LSR  +    +                  
Sbjct: 118 QDAFLPHVESGLFVFIGATTENPSFEVNSALLSRAAVYVLKS------------------ 159

Query: 180 LNFYEIEDLKTIVQRGAKLT-GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
               + ++L+ +++R      GL  TDEA   +   + G  R     L  V   A     
Sbjct: 160 ---LDEDELRELLERAQHELGGLTFTDEARDALIGSADGDGRKLLNNLEIVARAASQQKK 216

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             I   +  +AL                    + R   GG    + ISA     R +  D
Sbjct: 217 TEIDGALLGSALAEN-----------------LRRFDKGGDAFYDQISALHKSVRGSSPD 259

Query: 299 LIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
               +  +       PR   R ++ +AW+ +G+  P 
Sbjct: 260 GALYWFCRMLDGGADPRYLARRIVRMAWEDIGLADPR 296


>gi|255284508|ref|ZP_05349063.1| replication-associated recombination protein A [Bryantella
           formatexigens DSM 14469]
 gi|255264944|gb|EET58149.1| replication-associated recombination protein A [Bryantella
           formatexigens DSM 14469]
          Length = 438

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 89/347 (25%), Positives = 137/347 (39%), Gaps = 52/347 (14%)

Query: 2   MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD    + +N  +++A + S LRPRTLEE  GQ E     K+   A KA  + L  ++F 
Sbjct: 1   MDLFDYMRQNTMEKEAPLASRLRPRTLEEVVGQQEIIGEGKLLYRAIKA--DKLGSLIFY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDE 113
           GPPG GKTTLA+V+A     +F+  +  V A   D+  ++   +D       + +LF+DE
Sbjct: 59  GPPGTGKTTLAKVIANTTSADFKQINATV-AGKKDMEDVVKAAKDSLGMYGKKTILFVDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++ L P +ED  L L+    E P        +SR  +             L 
Sbjct: 118 IHRFNKGQQDYLLPFVEDGTLILIGATTENPYFEVNSALISRSVVFELKPLSKEDICTLI 177

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
           DR                   +RG       +  +A   +A  + G  R A   +     
Sbjct: 178 DR--------------AINDKERGMGNYNAVIDGDAKDFLADVADGDARAALNAVELGIL 223

Query: 232 FAEVAHAKTI--TREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISA 287
             E +    I  T E+A   + + A   DK G +  D                   TISA
Sbjct: 224 TTERSGDGKIHLTLEVASECIQKRAVRYDKTGDNHYD-------------------TISA 264

Query: 288 GLSEPRDAIEDLIEPYMIQQGFIQR--TPRGRLLMPIAWQHLGIDIP 332
            +   R +  D    Y+ +  +     T   R +M  A + +G   P
Sbjct: 265 FIKSMRGSDPDAAVYYLARMLYAGESVTFIARRIMICASEDVGNADP 311


>gi|322435979|ref|YP_004218191.1| AAA ATPase central domain protein [Acidobacterium sp. MP5ACTX9]
 gi|321163706|gb|ADW69411.1| AAA ATPase central domain protein [Acidobacterium sp. MP5ACTX9]
          Length = 445

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 79/329 (24%), Positives = 129/329 (39%), Gaps = 48/329 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RPR L+E+ GQ       K    A +    A   ++F GPPG+GKTTLA+++A+
Sbjct: 20  PLAERMRPRDLDEYAGQQHLLGVGKPLRLAIERDDPA--SMIFWGPPGVGKTTLAKIIAQ 77

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130
           +   +F   S  V++   ++  ++   E       R +LF+DEIHR +   ++   P +E
Sbjct: 78  KTQASFIEFSA-VLSGIKEIKNVMVEAEKASQFGSRTILFVDEIHRFNKAQQDAFLPYVE 136

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
              + L+    E PS       LSR        RV  L    +D     +R    + E  
Sbjct: 137 RGTIRLIGATTENPSFEINAALLSRC-------RVYTLQPLSEDEVIALLRRALADSEY- 188

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
                 G   +G+   ++A   IA  + G  R A   L      A      TIT+ +A  
Sbjct: 189 ------GLGESGVEADEDALASIAAYASGDARTALNALEVAAQLATGRGETTITKPLAAE 242

Query: 249 ALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           A+ R     DK G    D+                   ISA     R++  D    ++ +
Sbjct: 243 AMQRRMLLYDKKGEQHYDI-------------------ISALHKSVRNSDPDAALYWLGR 283

Query: 307 QGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                  P    R ++ +A + +G+  P 
Sbjct: 284 MLEAGEDPMYCARRIVRMAVEDIGLAAPE 312


>gi|77459806|ref|YP_349313.1| recombination factor protein RarA [Pseudomonas fluorescens Pf0-1]
 gi|77383809|gb|ABA75322.1| conserevd hypothetical protein [Pseudomonas fluorescens Pf0-1]
          Length = 441

 Score =  166 bits (421), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 78/344 (22%), Positives = 121/344 (35%), Gaps = 52/344 (15%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MMD       +        + LR   L+E+ GQ    +  K   EA +    AL  ++F 
Sbjct: 1   MMDLFR----SAPIAQPLAARLRATNLDEYVGQEHVLARGKPLREALEQ--GALHSMIFW 54

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLT-------NLEDRDVLFIDE 113
           GPPG+GKTTLA+++A     +F + S  V+A   ++   +            R +LF+DE
Sbjct: 55  GPPGVGKTTLARLLAEVSDAHFETVSA-VLAGVKEIRQAVEIAKQQAGQYGKRTILFVDE 113

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           +HR +   ++   P +ED  L  +    E PS       LSR  +    +        L 
Sbjct: 114 VHRFNKSQQDAFLPYVEDGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLV 173

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R                   +RG     L ++DE    +   + G  R    LL    D
Sbjct: 174 HRALTE---------------ERGLGKRHLTLSDEGFQMLLSAADGDGRRLLNLLENASD 218

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
            AE         E+    L  L  D                R   GG    + ISA    
Sbjct: 219 LAE------DNSEMGTELLQSLLGD-------------TRRRFDKGGEAFYDQISALHKS 259

Query: 292 PRDAIEDLIEPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
            R +  D    +  +       P    R ++ +A + +G   P 
Sbjct: 260 VRGSNPDGALYWFARMIDGGCDPLYLARRVVRMASEDIGNADPR 303


>gi|295675840|ref|YP_003604364.1| AAA ATPase central domain protein [Burkholderia sp. CCGE1002]
 gi|295435683|gb|ADG14853.1| AAA ATPase central domain protein [Burkholderia sp. CCGE1002]
          Length = 437

 Score =  166 bits (421), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 70/337 (20%), Positives = 118/337 (35%), Gaps = 52/337 (15%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           +             LRPR ++E  GQ       K     A    EA   ++  GPPG+GK
Sbjct: 1   MFEETRANVPLAERLRPRNIDEVIGQSHLLGPNKPL-RVAFESGEA-HSMILWGPPGVGK 58

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIV 121
           TTLA+++A      F + S  V++   D+   +   +       + ++F+DE+HR +   
Sbjct: 59  TTLARLMADAFDAQFIALSA-VLSGVKDIREAVETAQIHRANGHQTLVFVDEVHRFNKSQ 117

Query: 122 EEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           ++   P +E      +    E PS       LSR  +    +                  
Sbjct: 118 QDAFLPHVESGLFVFVGATTENPSFEVNSALLSRAAVYVLKS------------------ 159

Query: 180 LNFYEIEDLKTIVQRGAKLT-GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
                 ++ + +++R  K   GL  TDEA   +   + G  R     L  V   A     
Sbjct: 160 ---LTDDEQRELLERAQKELGGLTFTDEARTALIGSADGDGRKLLNNLEIVARAAAQQKT 216

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             I   +  +AL                    + R   GG    + ISA     R +  D
Sbjct: 217 TEIDGALLGSALAEN-----------------LRRFDKGGDAFYDQISALHKSVRGSNPD 259

Query: 299 LIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
               +  +       PR   R ++ +AW+ +G+  P 
Sbjct: 260 GALYWFCRMLDGGADPRYLARRIVRMAWEDIGLADPR 296


>gi|238917273|ref|YP_002930790.1| putative ATPase [Eubacterium eligens ATCC 27750]
 gi|238872633|gb|ACR72343.1| putative ATPase [Eubacterium eligens ATCC 27750]
          Length = 455

 Score =  166 bits (421), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 82/349 (23%), Positives = 136/349 (38%), Gaps = 52/349 (14%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           +MD    +  N    ++ ++  LRP TLEE  GQ       K+   A KA  + L  V+F
Sbjct: 15  IMDLFEYMRENNKNNESPLAMRLRPETLEEMVGQSHIVGKDKLLYRAIKA--DKLSSVIF 72

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFID 112
            GPPG GKTTLA+++A      F   +  V A   D+  ++   +D       + +LF+D
Sbjct: 73  YGPPGTGKTTLARIIANTTSAEFCQVNATV-AGKKDMEEVVAKAKDNLGMYGRKTILFVD 131

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           EIHR +   ++ L P +ED  + L+    E P        +SR       + +  L    
Sbjct: 132 EIHRFNKGQQDYLLPFVEDGTIILIGATTENPYFEVNGALISR-------SIIFELKPLE 184

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
           +D     I+   Y+        ++G       + D+A   +A  S G  R A   +    
Sbjct: 185 KDDIKTIIKRAVYDE-------KKGMGSYKAVIDDDALEFLADISNGDARNALNAVELGI 237

Query: 231 DFAEVAHAK--TITREIADAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETIS 286
              + +      I  E A   + +     DK G +  D                   TIS
Sbjct: 238 LTTDRSEDGFIHIDIETAQECIQKRSVRYDKEGDNHYD-------------------TIS 278

Query: 287 AGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           A +   R +  D +  Y+ +  +     +   R +M  A + +G   P+
Sbjct: 279 AFIKSMRGSDPDAVSYYLAKMLYAGEDIKFIARRIMICASEDVGNADPN 327


>gi|312865956|ref|ZP_07726177.1| replication-associated recombination protein A [Streptococcus
           downei F0415]
 gi|311098360|gb|EFQ56583.1| replication-associated recombination protein A [Streptococcus
           downei F0415]
          Length = 449

 Score =  166 bits (421), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 73/346 (21%), Positives = 129/346 (37%), Gaps = 56/346 (16%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M +  L   ++ +     S +RP++L++F GQ       K   E  +   + +  ++F G
Sbjct: 1   MPQTSLFDADMQKSAPLASRMRPQSLDDFVGQEHLVGQGKFLREMIEK--DQVSSMIFWG 58

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIH 115
           PPG+GKTTLA+++A++    F + S  V+    ++  ++   E      ++ ++FIDEIH
Sbjct: 59  PPGVGKTTLAEIIAKKTNAKFITFSA-VMNGIKEIRTIMNEAEENRSFGEKTIVFIDEIH 117

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P +E   + L+    E PS       LSR  +             L  R
Sbjct: 118 RFNKAQQDAFLPYVEKGSIILIGATTENPSFEVNSALLSRARVFVLKPLAKGDILNLLKR 177

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTG---LAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
                             V R         + ++DE    +A  + G  R A   L  + 
Sbjct: 178 ------------------VLRSEDAFPGIMVEISDELLERLAAYADGDARTALNTLEMLV 219

Query: 231 DFAEVAHAKTITREIADAAL---LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISA 287
             ++    K   RE     L     L  DK G D  ++                   ISA
Sbjct: 220 LNSDKEDDKVTIREELLTDLLGTKTLQYDKDGEDHYNI-------------------ISA 260

Query: 288 GLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
                R++  D    ++ +       P    R L+  A + +G+  
Sbjct: 261 LHKSMRNSDADSAVYWLGRMLAGGEDPVYIARRLVRFASEDIGLAD 306


>gi|317473057|ref|ZP_07932357.1| ATPase [Anaerostipes sp. 3_2_56FAA]
 gi|316899486|gb|EFV21500.1| ATPase [Anaerostipes sp. 3_2_56FAA]
          Length = 439

 Score =  166 bits (421), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 82/343 (23%), Positives = 132/343 (38%), Gaps = 42/343 (12%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD      +  S+++A ++  +RP+TL+E  GQ       K+   A +A  + L  ++F 
Sbjct: 1   MDLFDYARQKNSRKEAPLAGRMRPKTLDEVVGQEHIIGKDKLLYRAIQA--DKLSSIIFY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRDVLFIDEI 114
           GPPG GKTTLA+V+A+    NF   +     K        +    L   + + +LFIDEI
Sbjct: 59  GPPGTGKTTLARVIAQTTQANFVQMNATTSGKKEMQEAVKEAKEALGMFQKKTILFIDEI 118

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++ L P +ED  + L+    E P     +  +SR  +    +        L  
Sbjct: 119 HRFNKAQQDFLLPFVEDGTIILIGATTENPYFEVNQALISRSNVFELKSLEPEDIKKLLV 178

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R                T  ++G  +    +TDEA   +A  + G  R A   +      
Sbjct: 179 R--------------AVTDDEKGMGIYRAKITDEALDFLADMAEGDARSALNAVELGILT 224

Query: 233 AEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEP 292
            E      I  +I  A   +  I K             + R   GG    + ISA +   
Sbjct: 225 TEPGEDGEIVIDINVA---QECIQKR------------VMRYDKGGDNHYDIISAFIKSM 269

Query: 293 RDAIEDLIEPYMIQQGFIQR--TPRGRLLMPIAWQHLGIDIPH 333
           R +  D    Y+ +        T   R +M  A + +G   P 
Sbjct: 270 RGSDPDAAVYYLARMIDAGESVTFISRRIMICASEDVGNADPQ 312


>gi|78065552|ref|YP_368321.1| recombination factor protein RarA [Burkholderia sp. 383]
 gi|77966297|gb|ABB07677.1| Recombination protein MgsA [Burkholderia sp. 383]
          Length = 436

 Score =  166 bits (421), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 72/336 (21%), Positives = 125/336 (37%), Gaps = 54/336 (16%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
            V         LRP+TL E  GQ       K    A +  +     ++  GPPG+GKTTL
Sbjct: 6   QVEPRRPLAEALRPKTLAEVIGQTHLLGEGKPLRLAFE--SGKPHSMILWGPPGVGKTTL 63

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEE 123
           A++ A      F + S  V+    D+   +   +D         +LF+DEIHR +   ++
Sbjct: 64  ARLTALAFDCEFIALSA-VLGGVKDIRESMEQAKDTLNRTGRHTILFVDEIHRFNKGQQD 122

Query: 124 ILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
            L P +E   +  +    E PS       LSR  +    +                    
Sbjct: 123 ALLPFVESGLVTFIGATTENPSFEVNSALLSRAQVYVLKS-------------------- 162

Query: 182 FYEIEDLKTIVQRGAKL--TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
             + ++++ +++R  ++   GL+  ++A   +   + G  R    LL + +  A  A   
Sbjct: 163 -LDDDEMRQLLKRAQEIALDGLSFDEKAIDTLVGYADGDARRFLNLLEQAQTAATSAGTA 221

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           TI  E   +A+   A                  R   GG    + ISA     R +  D 
Sbjct: 222 TIDAEFVSSAMTLNA-----------------RRFDKGGDNFYDQISALHKSVRGSSPDG 264

Query: 300 IEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
              +  +       P+   R ++ +AW+ +G+  P 
Sbjct: 265 ALYWFCRMIDGGADPKYLARRIVRMAWEDIGLADPR 300


>gi|323246750|gb|EGA30722.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
          Length = 137

 Score =  166 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 73/135 (54%), Positives = 94/135 (69%)

Query: 199 TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKM 258
            GL ++D+ A E+A R+RGTPRIA RLLRRVRDFAEV H   I+ EIA  AL  L +D  
Sbjct: 1   MGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGAISAEIAAQALDMLNVDAE 60

Query: 259 GFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRL 318
           GFD +D + L  +   F GGPVG++ ++A + E R+ IED++EPY+IQQGF+QRTPRGR+
Sbjct: 61  GFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRM 120

Query: 319 LMPIAWQHLGIDIPH 333
               AW H GI  P 
Sbjct: 121 ATVRAWNHFGITPPE 135


>gi|32034563|ref|ZP_00134719.1| COG2256: ATPase related to the helicase subunit of the Holliday
           junction resolvase [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
          Length = 428

 Score =  166 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 80/326 (24%), Positives = 119/326 (36%), Gaps = 51/326 (15%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRTL E+ GQ       K    A +A       ++F GPPG GKTTLA+++A      
Sbjct: 1   MRPRTLAEYIGQAHLIEEGKPLRRAIEAGHS--HSMIFWGPPGTGKTTLAEIIAHHFDAE 58

Query: 82  FRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
               S        I +A + A L      R +LF+DE+HR +   ++   P +ED  +  
Sbjct: 59  VERLSAVTSGVKEIREAIERAKLNRQTGRRTLLFVDEVHRFNKSQQDAFLPHIEDGTIIF 118

Query: 137 M--VGEGPSARSVKINLSR-----FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           +    E PS       LSR        + A     +LTN L D+                
Sbjct: 119 IGATTENPSFELNNALLSRAKIYILKPLQAVEIAQVLTNALYDK---------------- 162

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
              +RG       + D     +A    G  R A   L  + D AE++       +  + A
Sbjct: 163 ---ERGLGNESYYIEDNVIELLADYVNGDARFALNCLELMSDMAEISSQG----KRLNKA 215

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           LL   + +              AR   GG    + ISA     R +  D    +  +   
Sbjct: 216 LLAEVLGER------------QARFDKGGDRYYDLISALHKSVRGSSPDGALYWYARILT 263

Query: 310 IQRTPR--GRLLMPIAWQHLGIDIPH 333
               P    R L+ IA + +G   P 
Sbjct: 264 AGGDPLYVARRLLAIASEDIGNADPR 289


>gi|307256490|ref|ZP_07538271.1| Replication-associated recombination protein A [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306864900|gb|EFM96802.1| Replication-associated recombination protein A [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 428

 Score =  166 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 80/326 (24%), Positives = 119/326 (36%), Gaps = 51/326 (15%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRTL E+ GQ       K    A +A       ++F GPPG GKTTLA+++A      
Sbjct: 1   MRPRTLAEYIGQAHLIGEGKPLRRAIEAGHS--HSMIFWGPPGTGKTTLAEIIAHHFDAE 58

Query: 82  FRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
               S        I +A + A L      R +LF+DE+HR +   ++   P +ED  +  
Sbjct: 59  VERLSAVTSGVKEIREAIERAKLNRQTGRRTLLFVDEVHRFNKSQQDAFLPHIEDGTIIF 118

Query: 137 M--VGEGPSARSVKINLSR-----FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           +    E PS       LSR        + A     +LTN L D+                
Sbjct: 119 IGATTENPSFELNNALLSRAKIYILKPLQAVEIAQVLTNALYDK---------------- 162

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
              +RG       + D     +A    G  R A   L  + D AE++       +  + A
Sbjct: 163 ---ERGLGNESYYIEDNVIELLADYVNGDARFALNCLELMSDMAEISPQG----KRLNKA 215

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           LL   + +              AR   GG    + ISA     R +  D    +  +   
Sbjct: 216 LLAEVLGER------------QARFDKGGDRYYDLISALHKSVRGSSPDGALYWYARILT 263

Query: 310 IQRTPR--GRLLMPIAWQHLGIDIPH 333
               P    R L+ IA + +G   P 
Sbjct: 264 AGGDPLYVARRLLAIASEDIGNADPR 289


>gi|121535958|ref|ZP_01667752.1| AAA ATPase, central domain protein [Thermosinus carboxydivorans
           Nor1]
 gi|121305450|gb|EAX46398.1| AAA ATPase, central domain protein [Thermosinus carboxydivorans
           Nor1]
          Length = 446

 Score =  166 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 83/347 (23%), Positives = 126/347 (36%), Gaps = 52/347 (14%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD    +    +++ A ++  +RPR+L+EF GQ       +      KA    L  +L  
Sbjct: 1   MDLFASVHLAEAEKKAPLAVRMRPRSLDEFVGQQHLVGPGRFLRRMLKA--GTLPSLLLF 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDE 113
           GPPG GKTTLA ++A   G +F   +  V A   D+   +   +        R +LFIDE
Sbjct: 59  GPPGTGKTTLAYLIANAAGCHFEKLNA-VAAGVADVRKQVEAAQERLKLYGQRTILFIDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++ L P +ED  + L+    E P        LSR  +            PL 
Sbjct: 118 IHRFNKGQQDALLPFVEDGTIILIGATTENPYFEVNSPLLSRMRITKL--------QPLS 169

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMR-SRGTPRIAGRLLRRVR 230
           +   + I +     E       RG     LA  + A      R     PRIA  +L +  
Sbjct: 170 EEEIVQILVRALTDE-------RGLGDRRLAWDEGALGHYCPRLPAAMPRIALNILEQAA 222

Query: 231 DFAEVAHAKTITREIADAAL--LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAG 288
              E      IT  + +  +       DK G    D+                   ISA 
Sbjct: 223 WQLEETGEGRITAAVLETVMGEKIHRYDKSGDSHYDV-------------------ISAF 263

Query: 289 LSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +   R +  D    Y+ +            R L+  A + +G   P 
Sbjct: 264 IKSLRGSDPDAALHYLARMLEAGEDVNFIARRLVISAAEDVGNADPQ 310


>gi|58426759|gb|AAW75796.1| ATPase [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 517

 Score =  166 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 70/327 (21%), Positives = 119/327 (36%), Gaps = 45/327 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RPRTL++  GQ    +       A +  +  +  ++  GPPG GKTTLA ++A 
Sbjct: 83  PLAERMRPRTLDDMVGQKRLLAPDSALRRAVE--SGRVHSMILWGPPGCGKTTLALLLAH 140

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAME 130
                F + S  V++   ++  +L           R VLF+DE+HR +   ++   P +E
Sbjct: 141 YADAEFNAISA-VLSGLPEVRQVLAEAAQRFAGGRRTVLFVDEVHRFNKAQQDAFLPHIE 199

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
              +  +    E PS       LSR  +                  G+  +     ++  
Sbjct: 200 RGTILFVGATTENPSFELNSALLSRCRVHVLE--------------GVSPQDIVEALQRA 245

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
               +RG     + V++ +  EIA  + G  R A  LL    + A          EI   
Sbjct: 246 LHDAERGLGQQTIQVSEASLLEIASAADGDVRRALTLLEIAAELATGEGG-----EITPR 300

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            LL++  D+               R    G    + ISA     R +  D    ++ +  
Sbjct: 301 TLLQVLADRT-------------RRFDKNGEQFYDQISALHKSVRSSNPDAALYWLTRML 347

Query: 309 FI--QRTPRGRLLMPIAWQHLGIDIPH 333
                 T   R L  +A + +G+  P 
Sbjct: 348 DGGCDPTYLARRLTRMAIEDIGLADPR 374


>gi|331085539|ref|ZP_08334623.1| hypothetical protein HMPREF0987_00926 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330407426|gb|EGG86928.1| hypothetical protein HMPREF0987_00926 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 438

 Score =  166 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 81/343 (23%), Positives = 132/343 (38%), Gaps = 44/343 (12%)

Query: 2   MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD    +     ++++ + S LRP+TLEE  GQ       K+   A KA  + L  ++F 
Sbjct: 1   MDLFDYMRETTKKKESPLASRLRPKTLEEVVGQHHIIGKDKLLYRAIKA--DKLSSIIFY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDE 113
           GPPG GKTTLA+V+A     NF   +  V A   D+  ++   +D       + +LF+DE
Sbjct: 59  GPPGTGKTTLAKVIANTTSANFTQINATV-AGKKDMEEVVRQAKDNQGMYGKKTILFVDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++ L P +ED  L L+    E P        +SR ++            PL+
Sbjct: 118 IHRFNKGQQDYLLPFVEDGTLILIGATTENPYFEVNGALISRSSIFEL--------KPLE 169

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
                 + +     E      +RG       + ++A   +A    G  R A   +     
Sbjct: 170 KEDIRRLIMRALTDE------ERGMGSYHAIIDEDALEFLADICGGDARNALNAIELGVL 223

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
             E +    I                   D +       + R   GG    +TISA +  
Sbjct: 224 TTERSEDGKIHIT---------------IDVVSECIQKRVVRYDKGGDNHYDTISAFIKS 268

Query: 292 PRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
            R +  D    Y+ +  +     +   R +M  A + +G   P
Sbjct: 269 MRGSDPDAAVFYLAKMLYAGEDVKFIARRIMICASEDVGNADP 311


>gi|307247443|ref|ZP_07529489.1| Replication-associated recombination protein A [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306856059|gb|EFM88216.1| Replication-associated recombination protein A [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
          Length = 428

 Score =  166 bits (420), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 80/326 (24%), Positives = 119/326 (36%), Gaps = 51/326 (15%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRTL E+ GQ       K    A +A       ++F GPPG GKTTLA+++A      
Sbjct: 1   MRPRTLAEYIGQAHLIGEGKPLRRAIEAGHS--HSMIFWGPPGTGKTTLAEIIAHHFDAE 58

Query: 82  FRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
               S        I +A + A L      R +LF+DE+HR +   ++   P +ED  +  
Sbjct: 59  VERLSAVTSGVKEIREAIERAKLNRQTGRRTLLFVDEVHRFNKSQQDAFLPHIEDGTIIF 118

Query: 137 M--VGEGPSARSVKINLSR-----FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           +    E PS       LSR        + A     +LTN L D+                
Sbjct: 119 IGATTENPSFELNNALLSRAKIYILKPLQAVEIAQVLTNALYDK---------------- 162

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
              +RG       + D     +A    G  R A   L  + D AE++       +  + A
Sbjct: 163 ---ERGLGNESYYIEDNVIELLADYVNGDARFALNCLELMSDMAEISPQG----KRLNKA 215

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           LL   + +              AR   GG    + ISA     R +  D    +  +   
Sbjct: 216 LLAEVLGER------------QARFDKGGDRYYDLISALHKSVRGSSPDGALYWYARILT 263

Query: 310 IQRTPR--GRLLMPIAWQHLGIDIPH 333
               P    R L+ IA + +G   P 
Sbjct: 264 AGGDPLYVARRLLAIASEDIGNADPR 289


>gi|227522807|ref|ZP_03952856.1| recombination ATPase [Lactobacillus hilgardii ATCC 8290]
 gi|227090008|gb|EEI25320.1| recombination ATPase [Lactobacillus hilgardii ATCC 8290]
          Length = 441

 Score =  166 bits (420), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 78/343 (22%), Positives = 133/343 (38%), Gaps = 50/343 (14%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M ++ L + N          +RP+TL +F GQ +     KV  E  +  ++ L  ++F G
Sbjct: 1   MKQQSLFAANDLANQPLAYRVRPQTLADFAGQQQLLGKGKVLREIIE--SDQLPSMIFWG 58

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLT------NLEDRDVLFIDEIH 115
           PPG GKTTLA+++A++    F + S  V +   D+  L+       N+  + ++F+DEIH
Sbjct: 59  PPGSGKTTLAEIIAKKTKAKFVTFSA-VTSGIRDIRKLMKDAEANRNMGGKTIVFVDEIH 117

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P +E   + L+    E PS       LSR  +         +  PLQ  
Sbjct: 118 RFNKAQQDAFLPFVEKGSITLIGATTENPSFEINAALLSRCKV--------FVLQPLQVN 169

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
             I +  +     D       G     + +  EA  +IA  + G  RIA   L    + +
Sbjct: 170 DIIQLIKHALVHPD-------GFAKQHVEIDGEAIRQIAEFANGDARIALNTLEMAVNNS 222

Query: 234 EVAHAKTITRE---IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
           E +  +            A      DK G +  +L                   ISA   
Sbjct: 223 EKSGDRIRVSTDNLHQLMATKSFLYDKSGEEHYNL-------------------ISALHK 263

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
             R++  D    ++ +       P    R L+  A + +G+  
Sbjct: 264 SMRNSDADAAVYWLSRMMNGGEDPLYIARRLVRFASEDIGLAD 306


>gi|120554468|ref|YP_958819.1| recombination factor protein RarA [Marinobacter aquaeolei VT8]
 gi|120324317|gb|ABM18632.1| Recombination protein MgsA [Marinobacter aquaeolei VT8]
          Length = 444

 Score =  166 bits (420), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 69/328 (21%), Positives = 117/328 (35%), Gaps = 45/328 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP +LE + GQ       K    A +     L  ++  GPPG+GKTT A+++A 
Sbjct: 14  PLAARMRPTSLEGYVGQAHLVGPGKPLRRAVEQGQ--LHSMILWGPPGVGKTTFARLLAN 71

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAM 129
              ++F + S  V++   ++  ++    +R        +LF+DE+HR +   ++   P +
Sbjct: 72  VGDLSFETISA-VLSGVKEIREVVERARNRKQSQGRDTLLFVDEVHRFNKSQQDAFLPHI 130

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ED     +    E PS       LSR  +             L D   +     F     
Sbjct: 131 EDGTFIFVGATTENPSFELNSALLSRTRVYVLKNLEAADIRRLLDS-ALESEQGF----- 184

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
                   A    +   +     +A  S G  R A  +L    D AE             
Sbjct: 185 --------AGQLRVE--ESVLATMAEASGGDARRALNILEVAADLAEPDDDGN------- 227

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
                   +++    L+    T + R   GG V  + ISA     R +  D    ++ + 
Sbjct: 228 --------NRVTAQTLEQVLQTSLRRFDKGGDVFYDQISALHKSVRGSNPDGSLYWLCRM 279

Query: 308 GFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                 P    R L+ IA + +G   P 
Sbjct: 280 LDGGCDPLYVARRLVRIASEDIGNADPR 307


>gi|190574295|ref|YP_001972140.1| recombination factor protein RarA [Stenotrophomonas maltophilia
           K279a]
 gi|190012217|emb|CAQ45840.1| putative ATPase [Stenotrophomonas maltophilia K279a]
          Length = 453

 Score =  166 bits (420), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 79/342 (23%), Positives = 124/342 (36%), Gaps = 55/342 (16%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           LLS +          +RPRTL+E  GQ    +       A +  +  +  ++  GPPG G
Sbjct: 14  LLSVDREHMRPLAERMRPRTLDEMVGQKRLLAPDSALRRAVE--SGRVHSMILWGPPGCG 71

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSII 120
           KTTLA ++A      FR+ S  V++   ++  +L           R VLF+DE+HR +  
Sbjct: 72  KTTLALLLAEYADAEFRAISA-VLSGLPEVRQVLAEAAQRFAEGRRTVLFVDEVHRFNKA 130

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTL-----IAATTRVGLLTNPLQDR 173
            ++   P +E   +  +    E PS       LSR  +     ++ T  V  L   L DR
Sbjct: 131 QQDAFLPHIERGTILFVGATTENPSFELNSALLSRCRVHVLEGVSPTDIVEALERALGDR 190

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                              +RG     + V  E   EIA  + G  R A  LL    + A
Sbjct: 191 -------------------ERGLGEEHIEVAPELLLEIATAADGDVRRALTLLEIAAELA 231

Query: 234 EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
                +          L ++  D+               R   GG    + ISA     R
Sbjct: 232 GGEGGRI-----TPQTLTQVLADRT-------------RRFDKGGEQFYDQISALHKSVR 273

Query: 294 DAIEDLIEPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
            +  D    ++ +       P    R L  +A + +G+  P 
Sbjct: 274 SSNPDAALYWLTRMLDGGCDPSYLARRLTRMAIEDIGLADPR 315


>gi|218781932|ref|YP_002433250.1| ATPase AAA [Desulfatibacillum alkenivorans AK-01]
 gi|218763316|gb|ACL05782.1| AAA ATPase central domain protein [Desulfatibacillum alkenivorans
           AK-01]
          Length = 441

 Score =  166 bits (420), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 75/338 (22%), Positives = 129/338 (38%), Gaps = 51/338 (15%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           +    +     +RPRTL+EF GQ        +   A +  ++ L  ++F GPPG GKTTL
Sbjct: 5   DRKNAEPLAEKMRPRTLDEFIGQEAVVGEGGIVRRAVE--SDHLFSMIFWGPPGCGKTTL 62

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEE 123
           A+++A      F   S  V +    +  ++   +DR        +LF+DEIHR +   ++
Sbjct: 63  ARIMANASQSYFMQISA-VGSGVKQIREVVEEAKDRRNFHAQKSILFVDEIHRFNKAQQD 121

Query: 124 ILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
              P +E   + L+    E PS   +   LSR  ++           PL       +  N
Sbjct: 122 GFLPHVESGIITLIGATTENPSFEVISPLLSRCRVVVL--------KPLSSDDMKTVIQN 173

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA--EVAHAK 239
             + E      ++G  +  +++ +EA   +A  + G  R A   L      A  +    +
Sbjct: 174 AVQDE------EKGLGMYDVSLEEEALENLAQGADGDARKALNTLELAVFLARPDEEGRR 227

Query: 240 TITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
            +T E    A  +     DK G    D+                   ISA     R +  
Sbjct: 228 VVTAEHVAQAWQKKQLNYDKGGDQHFDI-------------------ISALHKSLRGSDP 268

Query: 298 DLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           D    ++++       P    R ++  A + +G   PH
Sbjct: 269 DAAVYWLMRMLSAGEDPLYVARRMVRFASEDVGNADPH 306


>gi|291519780|emb|CBK75001.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [Butyrivibrio fibrisolvens 16/4]
          Length = 439

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 79/343 (23%), Positives = 126/343 (36%), Gaps = 44/343 (12%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD    + +   ++++ ++  LRP TL+E  GQ       K+   A KA  + L  ++F 
Sbjct: 1   MDLFDYMRQEAKKKESPLAARLRPTTLDEVVGQQHIIGKDKLLYRAIKA--DKLSSIIFY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDE 113
           GPPG GKTTLAQV+A      F S +    +   D+ A++   +        + +LFIDE
Sbjct: 59  GPPGTGKTTLAQVIAHTTAAEFTSINA-TTSGKKDMEAVVEAAKQTLGAYGKKTILFIDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++ L P +ED  + L+    E P        LSR                  
Sbjct: 118 IHRFNKGQQDYLLPFVEDGTIILIGATTENPYFEVNGALLSR------------------ 159

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
               I   L   E  D+KT++ R    +   +    A            IA    R    
Sbjct: 160 ---SIIFELKPLEAADIKTLIMRAITDSEKGLGSYDAVIDDDALDFLADIANGDARSALT 216

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
             E+    T   E             +  D         + +    G    +TISA +  
Sbjct: 217 AIELGVLTTDRAEDGK--------IHITIDVASECIQRRVIKYDKDGDNHYDTISAFIKS 268

Query: 292 PRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
            R +  D    Y+ +  +    P+   R +   A + +G   P
Sbjct: 269 MRGSDPDAAVYYLARMLYAGEDPKFIARRICICASEDVGNADP 311


>gi|269926092|ref|YP_003322715.1| AAA ATPase central domain protein [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269789752|gb|ACZ41893.1| AAA ATPase central domain protein [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 423

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 83/341 (24%), Positives = 130/341 (38%), Gaps = 50/341 (14%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           E    +         + +RPR ++E  GQ       K    A +   +++  ++  GPPG
Sbjct: 7   ENSSEQEDIHSQPLAARMRPRNIDEIVGQEHLLGPGKPLRAAIER--DSIPSIILWGPPG 64

Query: 65  LGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLA-ALLTNLEDRDVLFIDEIHRLS 118
            GKT+LA  +A     NF   S      P + +  + A  L  NL  R ++F+DEIHR +
Sbjct: 65  TGKTSLAMAIAETTSSNFVHLSAVSVGVPELRRVIESAIRLKRNLRKRTIVFLDEIHRFN 124

Query: 119 IIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
              ++ + P +E+  + L+    E PS       LSR  +         + NPL +    
Sbjct: 125 KAQQDAVLPHVENGSITLIGATTENPSFEVNSALLSRCRV--------YVLNPLSEEHIK 176

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
            I     E +      +RG     L V D A   +A  + G  RIA   L      A VA
Sbjct: 177 LILKRAIEDK------ERGLGSYALQVDDVALEFLADLANGDARIALTALEMA---ARVA 227

Query: 237 HAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRD 294
           +   I  ++    + R     DK G    DL                   ISA     RD
Sbjct: 228 NDGHIDVDLIREVVQRKVLLYDKSGDQHYDL-------------------ISALHKSIRD 268

Query: 295 AIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +  D    ++ +       P    R L+ IA + +G+  P+
Sbjct: 269 SDPDGSLYWLGRMLEAGEDPLYIARRLIRIATEDVGMADPN 309


>gi|330446443|ref|ZP_08310095.1| recombination factor [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328490634|dbj|GAA04592.1| recombination factor [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 446

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 81/337 (24%), Positives = 130/337 (38%), Gaps = 43/337 (12%)

Query: 8   LSRNVSQE-DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
            S + S +     + +RPRT+EE+ GQ       K    A +A    L  ++  GPPG G
Sbjct: 4   FSLDFSSDFRPLAARMRPRTVEEYIGQQHILGEGKPLRRALEAGH--LHSMILWGPPGTG 61

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALL------TNLEDRDVLFIDEIHRLSII 120
           KTTLA+V A          S  V +   D+ A +           R +LF+DE+HR +  
Sbjct: 62  KTTLAEVAAHYANAEVERVSA-VTSGIKDIRAAIGKARDNKMAGRRTILFVDEVHRFNKS 120

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++   P +ED  +  +    E PS       LSR  +    +        L+D   + +
Sbjct: 121 QQDAFLPHIEDGTVTFIGATTENPSFELNNALLSRARVYKLKS--------LEDSEILQV 172

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
                 +E   T  +RG   T L   D+   ++A   RG  R++   L ++ D AE    
Sbjct: 173 ------LEQALTDKERGVTETNLHFVDDIKEKLAEFVRGDARMSLNYLEQLIDMAE--ED 224

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
               ++I    L  +  +K             +AR    G +  + ISA     R +  D
Sbjct: 225 DKGVKQITVELLAEVTGEK-------------VARFDNKGDLWYDMISAVHKSIRGSNPD 271

Query: 299 LIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
               +  +       P    R L+ IA + +G   P 
Sbjct: 272 GALYWFARMLQAGCDPLYVARRLLAIASEDIGNADPR 308


>gi|282856171|ref|ZP_06265454.1| AAA ATPase central domain protein [Pyramidobacter piscolens W5455]
 gi|282585930|gb|EFB91215.1| AAA ATPase central domain protein [Pyramidobacter piscolens W5455]
          Length = 439

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 74/345 (21%), Positives = 131/345 (37%), Gaps = 52/345 (15%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M+   L     +Q     + LRPR+L+EF GQ       K+         + +  ++F G
Sbjct: 1   MEELNLFESEQTQ--PLAARLRPRSLDEFVGQTHLLGPDKILRRLI--VNDTISSMIFWG 56

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIH 115
           PPG+GKTTLA+++A +    F + S  V +   ++  ++   E       + ++F+DEIH
Sbjct: 57  PPGVGKTTLARIIANQTKAEFINFSA-VTSGIKEIRTVMQQAESNRAFGGKTIVFVDEIH 115

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P +E   + L+    E PS       LSR        +V +L     D 
Sbjct: 116 RFNKAQQDAFLPFVEKGSIILIGATTENPSFEVNGALLSRC-------KVFVLQALTTDE 168

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR-DF 232
               ++    +         RG     + +  E    IA  + G  R A   L  V  + 
Sbjct: 169 LVSLLQRALADP--------RGFGRQNVRIAPELLEMIANFANGDARSALSTLEMVVLNG 220

Query: 233 AEVAHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
                   +T E+ +  L + +   DK G +  +L                   ISA   
Sbjct: 221 NRADGETEVTPEVLEQCLSKKSLLYDKKGEEHYNL-------------------ISALHK 261

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
             R++  D    ++ +       P    R ++  A + +G+  P 
Sbjct: 262 SMRNSDPDAAVYWLARMLEAGEDPLYVARRIVRFASEDVGLADPR 306


>gi|325915378|ref|ZP_08177695.1| Recombination protein MgsA [Xanthomonas vesicatoria ATCC 35937]
 gi|325538425|gb|EGD10104.1| Recombination protein MgsA [Xanthomonas vesicatoria ATCC 35937]
          Length = 457

 Score =  166 bits (419), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 76/337 (22%), Positives = 121/337 (35%), Gaps = 45/337 (13%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           LLS +          +RPRTL+E  GQ    +       A +  +  +  ++  GPPG G
Sbjct: 14  LLSVDADHLRPLAERMRPRTLDEMVGQKRLLTPDSALRRAVE--SGRVHSMILWGPPGCG 71

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSII 120
           KTTLA ++A      F++ S  V++   D+  +L           R VLF+DE+HR +  
Sbjct: 72  KTTLALLLAHYADAEFKAISA-VLSGLPDVRQVLAEAAQRFASGRRTVLFVDEVHRFNKA 130

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++   P +E   +  +    E PS       LSR  +    +           R     
Sbjct: 131 QQDAFLPHIERGTILFVGATTENPSFELNSALLSRCRVHVLESVSPQDIVDALQR----- 185

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
                         +RG     + V+D +  EIA  + G  R A  LL    + A     
Sbjct: 186 ---------ALHDPERGLGQETIQVSDASLLEIASAADGDVRRALTLLEIAAELAGGEGG 236

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
                EI    LL++  D+               R    G    + ISA     R +  D
Sbjct: 237 -----EITPQTLLQVLADRT-------------RRFDKNGEQFYDQISALHKSVRSSNPD 278

Query: 299 LIEPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
               ++ +       P    R L  +A + +G+  P 
Sbjct: 279 AALYWLTRMLDGGCDPAYLARRLTRMAIEDIGLADPR 315


>gi|78222159|ref|YP_383906.1| recombination factor protein RarA [Geobacter metallireducens GS-15]
 gi|78193414|gb|ABB31181.1| Recombination protein MgsA [Geobacter metallireducens GS-15]
          Length = 441

 Score =  166 bits (419), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 77/347 (22%), Positives = 136/347 (39%), Gaps = 53/347 (15%)

Query: 1   MMDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M D     +   +  DA +   +RPRTL+++ GQ       K+     +  ++ L  ++F
Sbjct: 1   MTDLFDATAATETGRDAPLAERMRPRTLDDYVGQEHLLGEGKLLRRLIE--SDTLSSLIF 58

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFID 112
            GPPG GKTTLA+++A     +F   S  +++   ++  ++   E+         +LF+D
Sbjct: 59  WGPPGSGKTTLARIIANATKSHFIFFSA-ILSGVKEIREIVKEAENERKYRGSNTILFVD 117

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           EIHR +   ++   P +E     ++    E PS   +   LSR  ++   +        +
Sbjct: 118 EIHRFNKSQQDAFLPYVEKGVFTIIGATTENPSFEVIAPLLSRCKVLVLNSLTDEEVTTI 177

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
             R  +                +RG     LAV+DEA   +A +++G  RIA   L    
Sbjct: 178 LRRALV--------------DPERGLGNRSLAVSDEALAFMAEQAQGDARIALNTLETA- 222

Query: 231 DFAEVAHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAG 288
             A +A    I  + A  A  + A   DK G +                       ISA 
Sbjct: 223 --ARLAKNGEIDLDSAREAAQKKALLYDKGGEEHY-------------------NVISAF 261

Query: 289 LSEPRDAIEDLIEPYMIQQGFIQRTPRG--RLLMPIAWQHLGIDIPH 333
           +   R +  D    ++ +       P    R ++ +A + +G   P 
Sbjct: 262 IKSMRGSDPDGALYWLARMIEAGEDPLFILRRMVILASEDIGNADPR 308


>gi|194365713|ref|YP_002028323.1| recombination factor protein RarA [Stenotrophomonas maltophilia
           R551-3]
 gi|194348517|gb|ACF51640.1| AAA ATPase central domain protein [Stenotrophomonas maltophilia
           R551-3]
          Length = 453

 Score =  166 bits (419), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 80/342 (23%), Positives = 125/342 (36%), Gaps = 55/342 (16%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           LLS +          +RPRTL+E  GQ    +       A +  +  +  ++  GPPG G
Sbjct: 14  LLSVDREHMRPLAERMRPRTLDEMVGQKRLLAPDSALRRAVE--SGRVHSMILWGPPGCG 71

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSII 120
           KTTLA ++A      FR+ S  V++   ++  +L           R VLF+DE+HR +  
Sbjct: 72  KTTLALLLAEYSDAEFRAISA-VLSGLPEVRQVLAEAAQRFAEGRRTVLFVDEVHRFNKA 130

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTL-----IAATTRVGLLTNPLQDR 173
            ++   P +E   +  +    E PS       LSR  +     ++ T  V  L   L DR
Sbjct: 131 QQDAFLPHIERGTILFVGATTENPSFELNSALLSRCRVHVLEGVSPTDIVEALERALGDR 190

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                              +RG    G+ V  E   EIA  + G  R A  LL    + A
Sbjct: 191 -------------------ERGLGEEGIEVAPELLLEIATAADGDVRRALTLLEIAAELA 231

Query: 234 EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
                +          L ++  D+               R   GG    + ISA     R
Sbjct: 232 GGEGGRI-----TPQTLTQVLADRT-------------RRFDKGGEQFYDQISALHKSVR 273

Query: 294 DAIEDLIEPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
            +  D    ++ +       P    R L  +A + +G+  P 
Sbjct: 274 SSNPDAALYWLTRMLDGGCDPSYLARRLTRMAIEDIGLADPR 315


>gi|42525535|ref|NP_970633.1| recombination factor protein RarA [Treponema denticola ATCC 35405]
 gi|41815546|gb|AAS10514.1| ATPase, AAA family [Treponema denticola ATCC 35405]
          Length = 441

 Score =  166 bits (419), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 71/341 (20%), Positives = 125/341 (36%), Gaps = 39/341 (11%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           D     + +  Q +   S +RP +L+E+ GQ        +   A +A  + L  ++F GP
Sbjct: 4   DLFEAAASSSKQNEPLASRMRPISLDEYIGQEHIIGKGCLLRRAIQA--DRLSSLIFFGP 61

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIH 115
           PG GKTTLA+V+A     NF S +  V+A    +   +TN E+       + +LF+DE+H
Sbjct: 62  PGTGKTTLARVIANTTKSNFLSLNA-VLAGVQQIREAVTNAEENKKLYNRKTILFVDEVH 120

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++ L P +E+  + L+    E P     K  +SR  +            PL D 
Sbjct: 121 RWNKSQQDALLPWVENGTIILIGATTENPYFEVNKALVSRSRVFEL--------KPLTDN 172

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
               +       +      +RG     +     A   +   + G  R     L    + +
Sbjct: 173 DLKKVAQFALTNK------ERGYGNWKIEFEAGALEHLIDTASGDARSLLNALELAVETS 226

Query: 234 EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
                     +I  +        +      D             G    + ISA +   R
Sbjct: 227 AEHWPPEENFKITISLKAAEESIQKKVVLYDR-----------DGDYHYDVISAFIKSIR 275

Query: 294 DAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
            +  D    ++ +       PR   R ++  A + +G+  P
Sbjct: 276 GSDPDAAVYWLARMIAAGEDPRFIFRRMLISACEDIGLASP 316


>gi|297544999|ref|YP_003677301.1| AAA ATPase central domain-containing protein [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
 gi|296842774|gb|ADH61290.1| AAA ATPase central domain protein [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 443

 Score =  166 bits (419), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 77/341 (22%), Positives = 135/341 (39%), Gaps = 49/341 (14%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            +    V +       +RPRTL+EF GQ       K+  E  +   + +  ++  GPPG+
Sbjct: 7   SIFDNEVRKNKPLADRMRPRTLDEFVGQEHLLGKGKLLRELIEK--DNITSMILWGPPGV 64

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSI 119
           GKTTLA ++A      F + S  V++   ++  ++   E       R V+FIDEIHR + 
Sbjct: 65  GKTTLAMIIANMTNSKFVTFSA-VLSGIKEIKEIMAKAELDAMHGTRTVVFIDEIHRFNK 123

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             ++   P +E   + L+    E PS       LSR  +         +  PL +   + 
Sbjct: 124 AQQDAFLPHVEKGNIILIGATTENPSFEVNSALLSRSKV--------FVMKPLTEEDLLI 175

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV-A 236
           +     + E      Q G  +  + +T+E    IA+ + G  R+A   L      A+V  
Sbjct: 176 LLKRALKDE------QNGLGMYKIGITEEQLKRIALFANGDARVALNTLEIAVMGAKVTE 229

Query: 237 HAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRD 294
             + +T +I   A+ +     DK G +  +L                   ISA     R+
Sbjct: 230 GRRIVTDDILADAMQKKTLLYDKQGEEHYNL-------------------ISAFHKSLRN 270

Query: 295 AIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +  D    ++ +       P    R ++  A + +G+  P 
Sbjct: 271 SDWDAAVYWLARMLEAGEDPLYIARRMIRFASEDIGLADPQ 311


>gi|291521790|emb|CBK80083.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [Coprococcus catus GD/7]
          Length = 444

 Score =  166 bits (419), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 89/348 (25%), Positives = 142/348 (40%), Gaps = 52/348 (14%)

Query: 2   MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD    +  +  ++++ + S LRPRTL+E  GQ       K+   A KA  + L  ++  
Sbjct: 1   MDLFDYMREDKMEKESPLASRLRPRTLDEIVGQQHILGRDKMLYRAIKA--DKLSSIILY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDE 113
           GPPG GKTT+A+V+A      F   +  V A   D+  ++   +D       R +LF+DE
Sbjct: 59  GPPGTGKTTIAKVIANTTSAAFTQINATV-AGKKDMEQVVQEAKDRMGMYGKRTILFVDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++ L P +ED  L L+    E P        +SR       + +  L     
Sbjct: 118 IHRFNKGQQDYLLPFVEDGTLILIGATTENPYFEVNGALISR-------SVIFELKPLSA 170

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
           +  G+ IR   Y+ E       RG    G  ++D+A   +A  S G  R+A   +     
Sbjct: 171 EDIGVLIRRAVYDTE-------RGMGSYGAEISDDAVDFLADMSGGDARMALNAVELGVL 223

Query: 232 FAEVAHAKT--ITREIADAALLR--LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISA 287
             E +      IT ++A   + R  +  DK G +  D                   TISA
Sbjct: 224 TTEPSADGKIHITVDVASECIQRRVMRYDKNGDNHYD-------------------TISA 264

Query: 288 GLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +   R +  D    Y+ +  +    P    R +M  A + +G   P 
Sbjct: 265 FIKSMRGSDPDAAIYYLARMLYAGEEPAFIARRIMICASEDVGNADPQ 312


>gi|320538018|ref|ZP_08037922.1| recombination factor protein Rar [Treponema phagedenis F0421]
 gi|320145134|gb|EFW36846.1| recombination factor protein Rar [Treponema phagedenis F0421]
          Length = 732

 Score =  166 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 72/343 (20%), Positives = 124/343 (36%), Gaps = 40/343 (11%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M+++   S     E    + +RPR L+E+ GQ       ++   A +A  + L  V+F G
Sbjct: 1   MNKDLFASAQGGHE-PLAARMRPRNLDEYIGQEHIVGKGRLLRRAIQA--DRLSSVIFFG 57

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEI 114
           PPG GKTTLA+V+A     NF S +  V+A    +   ++  E+       R +LF+DE+
Sbjct: 58  PPGTGKTTLARVIANHTKSNFLSLNA-VLAGVQQIREAISKAEENKQLYDRRTILFVDEV 116

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++ L P +E+  +  +    E P     K  +SR  +   T           +
Sbjct: 117 HRWNRAQQDALLPWVENGTIIFIGATTENPFFEVNKALVSRSRVFQLTVLTDSDLAKAAE 176

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R                T  + G     +   + A   +   + G  R     L    + 
Sbjct: 177 R--------------ALTDTELGYGKWRIQFEEGALEHLIATASGDARSLLNALELAVET 222

Query: 233 AEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEP 292
           +          EI           +      D             G    + ISA +   
Sbjct: 223 SVPDWPPPTGAEILIDMQTAEESIQQKAVLYDR-----------DGDYHYDVISAFIKSI 271

Query: 293 RDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           R +  D    ++ +       PR   R ++  A + +G+  PH
Sbjct: 272 RGSDPDAAMYWLARMVAAGEDPRFIFRRMLISACEDIGLADPH 314


>gi|187923044|ref|YP_001894686.1| recombination factor protein RarA [Burkholderia phytofirmans PsJN]
 gi|187714238|gb|ACD15462.1| AAA ATPase central domain protein [Burkholderia phytofirmans PsJN]
          Length = 437

 Score =  166 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 69/337 (20%), Positives = 118/337 (35%), Gaps = 52/337 (15%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           +             LRPR ++E  GQ       K     A    EA   ++  GPPG+GK
Sbjct: 1   MFEETRANVPLAERLRPRNIDEVIGQKHLLGPNKPL-RVAFESGEA-HSMILWGPPGVGK 58

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIV 121
           TTLA+++A      F + S  V++   D+   +   +       + ++F+DE+HR +   
Sbjct: 59  TTLARLMADAFHAEFIALSA-VLSGVKDIREAVETAQIHRANGHQTLVFVDEVHRFNKSQ 117

Query: 122 EEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           ++   P +E      +    E PS       LSR  +    +                  
Sbjct: 118 QDAFLPHVESGLFVFVGATTENPSFEVNSALLSRAAVYVLKS------------------ 159

Query: 180 LNFYEIEDLKTIVQRGAKLT-GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
                 ++ + +++R  +   GL  TDEA   +   + G  R     L  V   A     
Sbjct: 160 ---LTDDEQRELLERAQQELGGLTFTDEARDALIGSADGDGRKLLNNLEIVARAASQQKT 216

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             I   +  +AL                    + R   GG    + ISA     R +  D
Sbjct: 217 TEIDGALLGSALAEN-----------------LRRFDKGGDAFYDQISALHKSVRGSSPD 259

Query: 299 LIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
               +  +       PR   R ++ +AW+ +G+  P 
Sbjct: 260 GALYWFCRMLDGGADPRYLARRIVRMAWEDIGLADPR 296


>gi|153814369|ref|ZP_01967037.1| hypothetical protein RUMTOR_00579 [Ruminococcus torques ATCC 27756]
 gi|317500083|ref|ZP_07958318.1| replication-associated recombination protein A [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|331087693|ref|ZP_08336619.1| hypothetical protein HMPREF1025_00202 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145848765|gb|EDK25683.1| hypothetical protein RUMTOR_00579 [Ruminococcus torques ATCC 27756]
 gi|316898568|gb|EFV20604.1| replication-associated recombination protein A [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|330409674|gb|EGG89110.1| hypothetical protein HMPREF1025_00202 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 438

 Score =  166 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 84/347 (24%), Positives = 132/347 (38%), Gaps = 52/347 (14%)

Query: 2   MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD    +     ++++ + S +RP+TL+E  GQ       K+   A KA  + L  V+F 
Sbjct: 1   MDLFDYMRETKKEKESPLASRMRPKTLDEVVGQQHIIGKDKLLYRAIKA--DKLSSVIFY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDE 113
           GPPG GKTTLA+V+A      F+  +  V A   D+  ++   +D       R +LFIDE
Sbjct: 59  GPPGTGKTTLAKVIANTTSAEFKQINATV-AGKKDMEEVVKEAKDMQGMYGKRTILFIDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++ L P +ED  + L+    E P        LSR  +             L 
Sbjct: 118 IHRFNKGQQDYLLPFVEDGTVILIGATTENPYFEVNGALLSRSAVFELKPLEKEDIKILL 177

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R                   ++G    G  + +EA   +A  S G  R A   +     
Sbjct: 178 RR--------------AVEDEEKGLGSFGAKIEEEALEFLADMSGGDARSALNAIELGVL 223

Query: 232 FAEVAHAKT--ITREIADAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISA 287
             E +      IT E A   + +     DK G +  D+                   ISA
Sbjct: 224 TTERSEDGIIHITLETASECIQKRVVNYDKKGDNHYDI-------------------ISA 264

Query: 288 GLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
            +   R +  D    Y+ +  +     +   R +M  A + +G   P
Sbjct: 265 FIKSMRGSDPDAAVFYLAKMLYAGEDVKFIARRIMICAAEDVGNADP 311


>gi|161830329|ref|YP_001597052.1| recombination factor protein RarA [Coxiella burnetii RSA 331]
 gi|161762196|gb|ABX77838.1| ATPase, AAA family [Coxiella burnetii RSA 331]
          Length = 440

 Score =  166 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 73/325 (22%), Positives = 119/325 (36%), Gaps = 41/325 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP  LEEF GQ       K    A +     L  ++  GPPG GKTTLA+++A+
Sbjct: 9   PLATRMRPGCLEEFVGQSHLLGKDKPLFRAIEK--GKLHSMILWGPPGSGKTTLAEIIAQ 66

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR----DVLFIDEIHRLSIIVEEILYPAMEDF 132
           + G    S S  V+A   D+  ++   E       +LF+DE+H  +   ++   P +E  
Sbjct: 67  KAGARVESISA-VLAGVKDIRDVVERAERHKGQATILFVDEVHGFNKSQQDAFLPHVEKG 125

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
            + L+    E PS +     LSR       TRV +L    +      +       E+   
Sbjct: 126 TITLIGATTENPSFQLNNALLSR-------TRVYVLKQLTEADLLSIL-------ENALA 171

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
             +RG     L + +     I   + G  R    LL  + DF                AL
Sbjct: 172 NEERGLGKKALEIPEPLRRRIVQFADGDARQCLNLLEIIADF----------------AL 215

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
                  +    +D      + R    G    + ISA     R +  D    ++ +    
Sbjct: 216 EENGRFVVDDGLIDKVLTEGLRRFDKRGEAFYDQISALHKSVRGSDPDASLYWLSRLLDG 275

Query: 311 QRTP--RGRLLMPIAWQHLGIDIPH 333
              P    R ++ +A + +G   P 
Sbjct: 276 GCDPFYVARRVVRMASEDIGNADPR 300


>gi|266621439|ref|ZP_06114374.1| replication-associated recombination protein A [Clostridium
           hathewayi DSM 13479]
 gi|288866879|gb|EFC99177.1| replication-associated recombination protein A [Clostridium
           hathewayi DSM 13479]
          Length = 444

 Score =  166 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 85/343 (24%), Positives = 130/343 (37%), Gaps = 43/343 (12%)

Query: 2   MDREGLLSRN-VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD    +  N + +E    S LRP TL+E  GQ       K+   A KA  + L  V+F 
Sbjct: 1   MDLFDFMRENTMDKESPLASRLRPATLDEVVGQQHIIGKDKLLYRAIKA--DKLGSVIFY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDE 113
           GPPG GKTTLA+V+A     +F+  +  V A   D+  ++            + +LF+DE
Sbjct: 59  GPPGTGKTTLAKVIANTTSADFKQINATV-AGKKDMEEIVKEARDSLGMFGRKTILFVDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++ L P +ED  L L+    E P        LSR       +RV  L    +
Sbjct: 118 IHRFNKGQQDYLLPFVEDGTLTLIGATTENPYFEVNGALLSR-------SRVFELKPLER 170

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
           +     IR   Y+ +       +G       + +EA   +A  + G  R A   +     
Sbjct: 171 EDIRELIRRAVYDRD-------KGMGAYNAVIDEEAMNFLADVANGDARAALNAVELGIM 223

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
             E   A        D A                     + R    G    +TISA +  
Sbjct: 224 TTERDAADGKIHIDIDVAQEC--------------IQKRVVRYDKDGDNHYDTISAFIKS 269

Query: 292 PRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
            R +  D    Y+ +  +     +   R +M  A + +G   P
Sbjct: 270 MRGSDPDAAVYYLARMLYAGEDMKFIARRIMICAAEDVGNADP 312


>gi|307728952|ref|YP_003906176.1| AAA ATPase central domain-containing protein [Burkholderia sp.
           CCGE1003]
 gi|307583487|gb|ADN56885.1| AAA ATPase central domain protein [Burkholderia sp. CCGE1003]
          Length = 437

 Score =  166 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 68/337 (20%), Positives = 118/337 (35%), Gaps = 52/337 (15%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           +             LRPR ++E  GQ       K    A ++       ++  GPPG+GK
Sbjct: 1   MFEETRANVPLAERLRPRNIDEVIGQKHLLGPNKPLRVAFESGQA--HSMILWGPPGVGK 58

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIV 121
           TTLA+++A      F + S  V++   D+   +   +       + ++F+DE+HR +   
Sbjct: 59  TTLARLMADAFHAQFIALSA-VLSGVKDIREAVETAQVHRANGHQTLVFVDEVHRFNKSQ 117

Query: 122 EEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           ++   P +E      +    E PS       LSR  +    +                  
Sbjct: 118 QDAFLPHVESGLFVFVGATTENPSFEVNSALLSRAAVYVLKS------------------ 159

Query: 180 LNFYEIEDLKTIVQRGAKLT-GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
               + ++L+ ++ R      GL  TDEA   +   + G  R     L  V   A     
Sbjct: 160 ---LDEDELRELLARAQHELGGLTFTDEARDALIGSADGDGRKLLNNLEIVARAASQQKT 216

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             I   +  +AL                    + R   GG    + ISA     R +  D
Sbjct: 217 TEIDGALLGSALAEN-----------------LRRFDKGGDAFYDQISALHKSVRGSSPD 259

Query: 299 LIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
               +  +       PR   R ++ +AW+ +G+  P 
Sbjct: 260 GALYWFCRMLDGGADPRYLARRIVRMAWEDIGLADPR 296


>gi|167756420|ref|ZP_02428547.1| hypothetical protein CLORAM_01953 [Clostridium ramosum DSM 1402]
 gi|167703828|gb|EDS18407.1| hypothetical protein CLORAM_01953 [Clostridium ramosum DSM 1402]
          Length = 444

 Score =  165 bits (418), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 76/344 (22%), Positives = 138/344 (40%), Gaps = 51/344 (14%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MM ++  + +N+S E    + LRP TL E+ GQ       K+  +     ++ +  ++F 
Sbjct: 4   MMMKQQAMFKNMSNE-PLANRLRPTTLTEYVGQRHLIGPGKILYQLI--NSDVVPSMVFW 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEI 114
           GPPG+GKTTLA+++A +    F + S  V +   D+ A++   ++      + ++F+DEI
Sbjct: 61  GPPGVGKTTLARIIANQTKAKFINFSA-VTSGIKDIRAVMKQAQEVQDLGEKTIVFVDEI 119

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++   P +E   + L+    E PS       LSR  +               D
Sbjct: 120 HRFNKAQQDAFLPYVEQGSIILIGATTENPSFEINSALLSRCKVFVLKALTTD------D 173

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
            FG+              I  +G K   + + D+    IA  S G  R+A   L      
Sbjct: 174 LFGLL---------HYALISPKGFKDQNVMIDDDLLYMIAGFSNGDARVALNTLEMAVLN 224

Query: 233 AEVAHAK-TITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGL 289
             + H +  + +E  +  + + +   DK G +  ++                   ISA  
Sbjct: 225 GAITHDRIVVDKETIEQCINQKSLLYDKKGEEHYNI-------------------ISALH 265

Query: 290 SEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
              R++  D    +M +       P    R L+  A + +G+  
Sbjct: 266 KSMRNSDIDASIYWMSRMIEAGEDPLYVARRLIRFASEDIGMAD 309


>gi|225386739|ref|ZP_03756503.1| hypothetical protein CLOSTASPAR_00487 [Clostridium asparagiforme
           DSM 15981]
 gi|225047150|gb|EEG57396.1| hypothetical protein CLOSTASPAR_00487 [Clostridium asparagiforme
           DSM 15981]
          Length = 443

 Score =  165 bits (418), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 86/344 (25%), Positives = 137/344 (39%), Gaps = 44/344 (12%)

Query: 2   MDREGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M+    +  +  + E    S LRP+TL+E  GQ       K+   A KA  + L  ++F 
Sbjct: 3   MNLFDYMRESKMESESPLASRLRPKTLDEVVGQQHIVGRDKLLYRAIKA--DKLGSIIFY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDE 113
           GPPG GKTTLA+V+A     +FR  +  V A   D+  ++   +D       + +LF+DE
Sbjct: 61  GPPGTGKTTLAKVIANTTSADFRQINATV-AGKKDMEEVVHAAKDNMGMYGKKTILFVDE 119

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++ L P +ED  L L+    E P        LSR       +R+  L    +
Sbjct: 120 IHRFNKGQQDYLLPFVEDGTLILIGATTENPYFEVNGALLSR-------SRIFELKPLEK 172

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
           +     IR   Y+ +       RG       + D+AA  +A  + G  R A   L  V  
Sbjct: 173 EDIRELIRRAVYDRD-------RGMGTYDAVIDDDAAEFLADTANGDARAA---LNAVEL 222

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
                      +   D A+ +  I K             + R    G    +T+SA +  
Sbjct: 223 GILTTERGPDGKIHIDLAVAQECIQKR------------VVRYDKNGDNHYDTVSAFIKS 270

Query: 292 PRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            R +  D    Y+ +  +     +   R +M  A + +G   P 
Sbjct: 271 MRGSDPDAAVYYLARMLYAGEDIKFIARRIMICASEDVGNADPQ 314


>gi|225075711|ref|ZP_03718910.1| hypothetical protein NEIFLAOT_00727 [Neisseria flavescens
           NRL30031/H210]
 gi|224952982|gb|EEG34191.1| hypothetical protein NEIFLAOT_00727 [Neisseria flavescens
           NRL30031/H210]
          Length = 435

 Score =  165 bits (418), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 72/333 (21%), Positives = 112/333 (33%), Gaps = 49/333 (14%)

Query: 12  VSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           V + DA +   LRP TL++  GQ       K    A +        +L  GPPG+GKTTL
Sbjct: 6   VREPDAPLAERLRPHTLDDVVGQEHLIGEGKPLRVAVE--GGKPHSMLLWGPPGVGKTTL 63

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEI 124
           A+++A+     F   S  V +   D+   +   E         +LF+DE+HR +   ++ 
Sbjct: 64  ARILAQSFNAQFLPVSA-VFSGVKDIRGAIDKAEIALQQGRATILFVDEVHRFNKAQQDA 122

Query: 125 LYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             P +E   L  +    E PS       LSR  +             L  +         
Sbjct: 123 FLPYVESGLLTFIGATTENPSFEVNPALLSRAQVYVLQPLSSDGLKKLVAKVLALPEYRD 182

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           + IE         A+   +   D  A  +                     A+    KT+T
Sbjct: 183 FTIEA-------DAQELLVNTADGDARRLLNLLEQL-----------LRAADTRRLKTLT 224

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            E    +L                    I R   GG      ISA     R +  +    
Sbjct: 225 AEFLADSLGAQ-----------------IRRFDKGGESFYNQISALHKSVRGSHPNAALY 267

Query: 303 YMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +  +       PR   R ++ IAW+ +G+  P 
Sbjct: 268 WFCRMLDGGTDPRYLARRIVRIAWEDIGLADPR 300


>gi|227512582|ref|ZP_03942631.1| recombination ATPase [Lactobacillus buchneri ATCC 11577]
 gi|227084197|gb|EEI19509.1| recombination ATPase [Lactobacillus buchneri ATCC 11577]
          Length = 441

 Score =  165 bits (418), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 78/343 (22%), Positives = 133/343 (38%), Gaps = 50/343 (14%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M ++ L + N          +RP+TL +F GQ +     KV  E  +  ++ L  ++F G
Sbjct: 1   MKQQSLFAANDLANQPLAYRVRPQTLADFAGQQQLLGKGKVLREIIE--SDQLPSMIFWG 58

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLT------NLEDRDVLFIDEIH 115
           PPG GKTTLA+++A++    F + S  V +   D+  L+       N+  + ++F+DEIH
Sbjct: 59  PPGSGKTTLAEIIAKKTKAKFVTFSA-VTSGIRDIRKLMKDAEANRNMGGKTIVFVDEIH 117

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P +E   + L+    E PS       LSR  +         +  PLQ  
Sbjct: 118 RFNKAQQDAFLPFVEKGSITLIGATTENPSFEINAALLSRCKV--------FVLQPLQVN 169

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
             I +  +     D       G     + +  EA  +IA  + G  RIA   L    + +
Sbjct: 170 DIIQLIKHALVHPD-------GFAKQHVEIDGEAIRQIAEFANGDARIALNTLEMAVNNS 222

Query: 234 EVAHAKTITRE---IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
           E +  +            A      DK G +  +L                   ISA   
Sbjct: 223 EKSGDRIRVSTDNLHQLMATKSFLYDKSGEEHYNL-------------------ISALHK 263

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
             R++  D    ++ +       P    R L+  A + +G+  
Sbjct: 264 SMRNSDADAAVYWLSRMMNAGEDPLYIARRLVRFASEDIGLAD 306


>gi|322514789|ref|ZP_08067812.1| replication-associated recombination protein A [Actinobacillus
           ureae ATCC 25976]
 gi|322119251|gb|EFX91381.1| replication-associated recombination protein A [Actinobacillus
           ureae ATCC 25976]
          Length = 446

 Score =  165 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 80/336 (23%), Positives = 122/336 (36%), Gaps = 42/336 (12%)

Query: 8   LSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           LS + S++   + + +RPRTL E+ GQ       K    A +A       ++F GPPG G
Sbjct: 4   LSFDFSEDFRPLPARMRPRTLAEYIGQSHLIGEGKPLRRAIEAGHS--HSMIFWGPPGTG 61

Query: 67  KTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           KTTLA+++A          S        I +A + A L      R +LF+DE+HR +   
Sbjct: 62  KTTLAEIIAHHFDAEVERLSAVTSGVKEIREAIERAKLNRQTGRRTLLFVDEVHRFNKSQ 121

Query: 122 EEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           ++   P +ED  +  +    E PS       LSR        R+ +L           ++
Sbjct: 122 QDAFLPHIEDGTIIFIGATTENPSFELNNALLSR-------ARIYILKPLQTVEIHQILQ 174

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
              ++ E       RG       + D+    +A    G  R A   L  + D AE     
Sbjct: 175 NALFDKE-------RGLGNESFVLEDDVLTLLADYVNGDGRYALNCLELMSDMAEQGTQG 227

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  +     LL                    AR   GG    + ISA     R +  D 
Sbjct: 228 KILNKALLTELLGERS----------------ARFDKGGDRFYDLISALHKSVRGSSPDG 271

Query: 300 IEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
              +  +       P    R L+ IA + +G   P 
Sbjct: 272 ALYWYARILTAGGDPLYVARRLLAIASEDIGNADPR 307


>gi|325267281|ref|ZP_08133943.1| replication-associated recombination protein A [Kingella
           denitrificans ATCC 33394]
 gi|324981218|gb|EGC16868.1| replication-associated recombination protein A [Kingella
           denitrificans ATCC 33394]
          Length = 435

 Score =  165 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 63/327 (19%), Positives = 109/327 (33%), Gaps = 48/327 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP+ L++  GQ       K    A +  +     +L  G PG+GKTTLA+++A+
Sbjct: 12  PLAERLRPQNLDDVLGQEHLTGEGKPLRVAME--SGIPHSMLLWGSPGIGKTTLARIIAQ 69

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAME 130
             G  F   S  V +   D+   +         + R +LF+DE+HR +   ++   P +E
Sbjct: 70  GFGAQFLPVSA-VFSGVKDIREAIQKAEAAWQRQQRTILFVDEVHRFNKAQQDAFLPHVE 128

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
              +  +    E PS       LSR  +           + L  +           +E  
Sbjct: 129 SGLITFIGATTENPSFEVNAALLSRAQVYVLKPLGESSLHRLYQKAQQLPEYENLTLE-- 186

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
                            EA   +   + G  R    +L +    A+    +    +   A
Sbjct: 187 ----------------PEALTLLCQAADGDARRFLNMLEQWFHAAQTR--RIARIDADFA 228

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           A                     + R   GG      ISA     R +  +    +  +  
Sbjct: 229 AQNMG---------------DTVRRFDKGGEAFYNQISALHKSVRGSHPNAALYWFCRMI 273

Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIPH 333
                PR   R ++ +AW+ +G+  P 
Sbjct: 274 DGGADPRYLARRIVRMAWEDIGLADPR 300


>gi|289578776|ref|YP_003477403.1| ATPase AAA [Thermoanaerobacter italicus Ab9]
 gi|289528489|gb|ADD02841.1| AAA ATPase central domain protein [Thermoanaerobacter italicus Ab9]
          Length = 443

 Score =  165 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 76/341 (22%), Positives = 134/341 (39%), Gaps = 49/341 (14%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            +    V +       +RP+TL+EF GQ       K+  E  +   + +  ++  GPPG+
Sbjct: 7   SIFDNEVRKNKPLADRMRPKTLDEFVGQEHLLGKGKLLRELIEK--DNITSMILWGPPGV 64

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSI 119
           GKTTLA ++A      F + S  V++   ++  ++   E       R V+FIDEIHR + 
Sbjct: 65  GKTTLAMIIANMTNSKFVTFSA-VLSGIKEIKEIMAKAELDAMHGTRTVVFIDEIHRFNK 123

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             ++   P +E   + L+    E PS       LSR  +         +  PL     + 
Sbjct: 124 AQQDAFLPHVEKGNIILIGATTENPSFEVNSALLSRSKV--------FVMKPLTKEDLLI 175

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV-A 236
           +     + E      Q G  +  + +T+E    IA+ + G  R+A   L      A+V  
Sbjct: 176 LLKRALKDE------QNGLGMYKIGITEEQLKRIALFANGDARVALNTLEIAVMGAKVTE 229

Query: 237 HAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRD 294
             + +T +I   A+ +     DK G +  +L                   ISA     R+
Sbjct: 230 GRRIVTDDILADAMQKKTLLYDKQGEEHYNL-------------------ISAFHKSLRN 270

Query: 295 AIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +  D    ++ +       P    R ++  A + +G+  P 
Sbjct: 271 SDWDAAVYWLARMLEAGEDPLYIARRMIRFASEDIGLADPQ 311


>gi|330810442|ref|YP_004354904.1| Replication-associated recombination protein [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327378550|gb|AEA69900.1| Replication-associated recombination protein [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 442

 Score =  165 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 79/344 (22%), Positives = 122/344 (35%), Gaps = 52/344 (15%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MMD       +        + LR   L+E+ GQ    +  K   EA +    AL  ++F 
Sbjct: 1   MMDLFR----SAPIAQPLAARLRATNLDEYVGQEHVLARGKPLREALEQ--GALHSMIFW 54

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLT-------NLEDRDVLFIDE 113
           GPPG+GKTTLA+++A     +F + S  V+A   ++   +            R +LF+DE
Sbjct: 55  GPPGVGKTTLARLLAEVSDAHFETVSA-VLAGVKEIRQAVEVAKQQAGQYGKRTILFVDE 113

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           +HR +   ++   P +ED  L  +    E PS       LSR  +    +        L 
Sbjct: 114 VHRFNKSQQDAFLPYVEDGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAAMRKLV 173

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R                   +RG     L+++DE    +   + G  R    LL    D
Sbjct: 174 HRALTE---------------ERGLGKRHLSLSDEGFQILFSAADGDGRRLLNLLENASD 218

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
            AE         EI    L  L  D                R   GG    + ISA    
Sbjct: 219 LAE------DDSEIGVELLQSLLGD-------------TRRRFDKGGEAFYDQISALHKS 259

Query: 292 PRDAIEDLIEPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
            R +  D    +  +       P    R ++ +A + +G   P 
Sbjct: 260 IRGSNPDAALYWFARMIDGGCDPLYLARRVVRMASEDIGNADPR 303


>gi|302384865|ref|YP_003820687.1| ATPase AAA [Clostridium saccharolyticum WM1]
 gi|302195493|gb|ADL03064.1| AAA ATPase central domain protein [Clostridium saccharolyticum WM1]
          Length = 439

 Score =  165 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 86/348 (24%), Positives = 135/348 (38%), Gaps = 53/348 (15%)

Query: 2   MDREGLLSRN-VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD    +  N +  E    S LRP +L+E  GQ       K+   A KA  + L  V+F 
Sbjct: 1   MDLFDYMRENTMKNESPLASRLRPASLDEVVGQQHIIGRDKLLYRAIKA--DKLGSVIFY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDE 113
           GPPG GKTTLA+V+A     +F+  +  V A   D+  ++   +D       + +LF+DE
Sbjct: 59  GPPGTGKTTLARVIANTTSADFKQINATV-AGKKDMEEIVKEAKDSLGMYGKKTILFVDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++ L P +ED  L L+    E P        LSR       +RV  L    +
Sbjct: 118 IHRFNKGQQDYLLPFVEDGTLILIGATTENPFFEVNGALLSR-------SRVFELKPLEK 170

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR---- 227
           +     IR   Y+ +       +G       + ++A   +A  S G  R A   +     
Sbjct: 171 EDIRELIRRAVYDRD-------KGMGSYHAVIDEDAEEFLADVSNGDARAALNAVELGVM 223

Query: 228 -RVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETIS 286
              RD ++      +T          +  DK G +  D                   TIS
Sbjct: 224 TTDRDQSDGKIHINLTVAQECIQKRVVRYDKTGDNHYD-------------------TIS 264

Query: 287 AGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           A +   R +  D    Y+ +  +     +   R +M  A + +G   P
Sbjct: 265 AFIKSMRGSDPDAAVYYLARMLYAGEDIKFIARRIMICAAEDVGNADP 312


>gi|229220692|ref|NP_820184.4| recombination factor protein RarA [Coxiella burnetii RSA 493]
 gi|30581044|sp|P39918|RARA_COXBU RecName: Full=Replication-associated recombination protein A
          Length = 440

 Score =  165 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 73/325 (22%), Positives = 119/325 (36%), Gaps = 41/325 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP  LEEF GQ       K    A +     L  ++  GPPG GKTTLA+++A+
Sbjct: 9   PLATRMRPGCLEEFVGQSHLLGKDKPLFRAIEK--GKLHSMILWGPPGSGKTTLAEIIAQ 66

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR----DVLFIDEIHRLSIIVEEILYPAMEDF 132
           + G    S S  V+A   D+  ++   E       +LF+DE+H  +   ++   P +E  
Sbjct: 67  KAGARVESISA-VLAGVKDIRDVVERAERHKGQATILFVDEVHGFNKSQQDAFLPHVEKG 125

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
            + L+    E PS +     LSR       TRV +L    +      +       E+   
Sbjct: 126 TITLIGATTENPSFQLNNALLSR-------TRVYVLKQLTEADLLSIL-------ENALA 171

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
             +RG     L + +     I   + G  R    LL  + DF                AL
Sbjct: 172 NEERGLGKKALEIPEPLRRRIVQFADGDARQCLNLLEIIADF----------------AL 215

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
                  +    +D      + R    G    + ISA     R +  D    ++ +    
Sbjct: 216 EENGRFVVDDGLIDKVLTEGLRRFDKRGEAFYDQISALHKSVRGSDPDASLYWLSRLLDG 275

Query: 311 QRTP--RGRLLMPIAWQHLGIDIPH 333
              P    R ++ +A + +G   P 
Sbjct: 276 GCDPFYVARRVVRMASEDIGNADPR 300


>gi|213581978|ref|ZP_03363804.1| Holliday junction DNA helicase B [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 133

 Score =  165 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 71/131 (54%), Positives = 92/131 (70%)

Query: 203 VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQ 262
           ++D+ A E+A R+RGTPRIA RLLRRVRDFAEV H   I+ EIA  AL  L +D  GFD 
Sbjct: 1   MSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGAISAEIAAQALDMLNVDAEGFDY 60

Query: 263 LDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPI 322
           +D + L  +   F GGPVG++ ++A + E R+ IED++EPY+IQQGF+QRTPRGR+    
Sbjct: 61  MDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMATVR 120

Query: 323 AWQHLGIDIPH 333
           AW H GI  P 
Sbjct: 121 AWNHFGITPPE 131


>gi|304387476|ref|ZP_07369667.1| replication-associated recombination protein A [Neisseria
           meningitidis ATCC 13091]
 gi|304338569|gb|EFM04688.1| replication-associated recombination protein A [Neisseria
           meningitidis ATCC 13091]
          Length = 436

 Score =  165 bits (417), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 70/333 (21%), Positives = 113/333 (33%), Gaps = 49/333 (14%)

Query: 12  VSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
             + DA +   LRP TL++  GQ       K    A +        +L  G PG+GKTTL
Sbjct: 6   AREPDAPLAERLRPHTLDDVVGQEHLIGEGKPLRVAVE--GGKPHSMLLWGSPGVGKTTL 63

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEI 124
           A+++A+     F   S  V +   D+   +   E         +LF+DE+HR +   ++ 
Sbjct: 64  ARILAQSFNAQFLPVSA-VFSGVKDIREAIDKAEIALQQGRATILFVDEVHRFNKAQQDA 122

Query: 125 LYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             P +E+  L  +    E PS       LSR  +    +        L  +         
Sbjct: 123 FLPYVENGLLTFIGATTENPSFEVNPALLSRAQVYVLQSLSSDDLKKLIAKVLALPEYQE 182

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           + IE         A+   +   D  A  +        R A    RR+++           
Sbjct: 183 FTIET-------DAQKLLVNTADGDARRLLNLLEQLLRAADT--RRLKNLTA-------- 225

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
                        D +G           I R   GG      ISA     R +  +    
Sbjct: 226 ---------EFLADSLGAQ---------IRRFDKGGESFYNQISALHKSVRGSHPNAALY 267

Query: 303 YMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +  +       PR   R ++ IAW+ +G+  P 
Sbjct: 268 WFCRMLDGGTDPRYLARRIVRIAWEDIGLADPR 300


>gi|126667375|ref|ZP_01738347.1| hypothetical protein MELB17_13951 [Marinobacter sp. ELB17]
 gi|126628131|gb|EAZ98756.1| hypothetical protein MELB17_13951 [Marinobacter sp. ELB17]
          Length = 445

 Score =  165 bits (417), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 78/328 (23%), Positives = 121/328 (36%), Gaps = 45/328 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP  L ++ GQ       K    A +     L  ++  GPPG+GKTT AQ++A 
Sbjct: 14  PLAARMRPAKLADYVGQPHLVGPGKPLRRAVEQGQ--LHSMILWGPPGVGKTTFAQLLAN 71

Query: 77  ELGVNFRSTSGPVIAKAGDLAALL-------TNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
              + F + S  V++   D+ A +              +LF+DE+HR +   ++   P +
Sbjct: 72  VSDLAFENVSA-VLSGVKDIRAAVERARARKQGSGQDTLLFVDEVHRFNKSQQDAFLPHI 130

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ED     +    E PS       LSR       TRV +L N   D     +       E 
Sbjct: 131 EDGTFIFVGATTENPSFELNSALLSR-------TRVYVLKNLEDDDIQRLLIRALSAEEG 183

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
               ++         V ++    +A  + G  R A  +L    D AE             
Sbjct: 184 FGGRLR---------VAEDVLAMMASAASGDARRALNILEVAADLAEPDADGV------- 227

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
                   D +  DQL+L   T + R   GG V  + ISA     R +  D    +M + 
Sbjct: 228 --------DSVSEDQLELVMQTSLRRFDKGGDVFYDQISALHKSVRGSDPDGSLYWMCRM 279

Query: 308 GFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                 P    R L+ IA + +G   P 
Sbjct: 280 LDGGCDPLYVARRLVRIASEDIGNADPR 307


>gi|113866790|ref|YP_725279.1| recombination factor protein RarA [Ralstonia eutropha H16]
 gi|113525566|emb|CAJ91911.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [Ralstonia eutropha H16]
          Length = 455

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 75/340 (22%), Positives = 122/340 (35%), Gaps = 47/340 (13%)

Query: 5   EGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           + L S    +    +   LRPRT++E  GQ       K    A ++       ++  GPP
Sbjct: 3   DTLFSDTPDRSRQPLAERLRPRTIDEVIGQQHLLGAGKPLRVAFESGE--PHSMILWGPP 60

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRL 117
           G+GKTTLA+++A      F + S  V++   D+   +   E       R ++F+DE+HR 
Sbjct: 61  GVGKTTLARLMASAFDAEFIALSA-VLSGVKDIREAVERAEQFRAHGRRTLVFVDEVHRF 119

Query: 118 SIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
           +   ++   P +E      +    E PS       LSR  +    +        L  R  
Sbjct: 120 NKSQQDAFLPHVESGLFTFIGATTENPSFEVNGALLSRAAVYVLKSLDDAELTQLALRAS 179

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
             +                GA+   L+  DEA   I   + G  R     +  V   A  
Sbjct: 180 EEL----------------GAQAGDLSWQDEALQLIVASADGDGRKLLNNIEIVARAART 223

Query: 236 AHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDA 295
           A A  I   +  +AL                    + R   GG    + ISA     R +
Sbjct: 224 AGAAQIDTALLGSALSEN-----------------LRRFDKGGDAFYDQISALHKSVRGS 266

Query: 296 IEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
             D    +  +       PR   R ++ +AW+ +G+  P 
Sbjct: 267 DPDAALYWFCRMIDGGADPRYLARRIVRMAWEDIGLADPR 306


>gi|161870104|ref|YP_001599274.1| recombination factor protein RarA [Neisseria meningitidis 053442]
 gi|161595657|gb|ABX73317.1| putative ATPase [Neisseria meningitidis 053442]
          Length = 436

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 71/333 (21%), Positives = 112/333 (33%), Gaps = 49/333 (14%)

Query: 12  VSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
             + DA +   LRP TL++  GQ       K    A +        +L  GPPG+GKTTL
Sbjct: 6   AREPDAPLAERLRPHTLDDVVGQEHLIGEGKPLRVAVE--GGKPHSMLLWGPPGVGKTTL 63

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEI 124
           A+++A+     F   S  V +   D+   +   E         +LF+DE+HR +   ++ 
Sbjct: 64  ARILAQSFNAQFLPVSA-VFSGVKDIREAIDKAEIALQQGRATILFVDEVHRFNKAQQDA 122

Query: 125 LYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             P +E   L  +    E PS       LSR  +             L  +         
Sbjct: 123 FLPHVESGLLTFIGATTENPSFEVNPALLSRAQVYVLQPLSSDGLKKLVAKVLALPEYRD 182

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           + IE         A+   +   D  A  +        R A    RR+++           
Sbjct: 183 FTIEA-------DAQELFVNTADGDARRLLNLLEQLLRAADT--RRLKNLTA-------- 225

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
                        D +G           I R   GG      ISA     R +  +    
Sbjct: 226 ---------EFLADSLGAQ---------IRRFDKGGESFYNQISALHKSVRGSHPNAALY 267

Query: 303 YMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +  +       PR   R ++ IAW+ +G+  P 
Sbjct: 268 WFCRMLDGGTDPRYLARRIVRIAWEDIGLADPR 300


>gi|325919437|ref|ZP_08181463.1| Recombination protein MgsA [Xanthomonas gardneri ATCC 19865]
 gi|325550103|gb|EGD20931.1| Recombination protein MgsA [Xanthomonas gardneri ATCC 19865]
          Length = 457

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 77/336 (22%), Positives = 122/336 (36%), Gaps = 43/336 (12%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           LLS +          +RPRTL+E  GQ    +       A +  +  +  ++  GPPG G
Sbjct: 14  LLSVDGEHLRPLAERMRPRTLDEMVGQKRLLAPDSALRRAVE--SGRVHSMILWGPPGCG 71

Query: 67  KTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           KTTLA ++A      F++ S      P + +    AA       R VLF+DE+HR +   
Sbjct: 72  KTTLALLLAHYSDAEFKAISAVLSGLPEVRQVLAEAAQRFASGRRTVLFVDEVHRFNKAQ 131

Query: 122 EEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           ++   P +E   +  +    E PS       LSR  +                  G+  +
Sbjct: 132 QDAFLPHIERGTILFVGATTENPSFELNSALLSRCRVHVLE--------------GVSPQ 177

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
                ++      +RG     + VTD +  EIA  + G  R A  LL    + A      
Sbjct: 178 DIVEALQRALHDSERGLGQETIQVTDASLLEIASAADGDVRRALTLLEIAAELATGEGG- 236

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
               EI    LL++  D+               R    G    + ISA     R +  D 
Sbjct: 237 ----EITPQTLLQVLADRT-------------RRFDKNGEQFYDQISALHKSVRSSNPDA 279

Query: 300 IEPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
              ++ +       P    R L  +A + +G+  P 
Sbjct: 280 ALYWLTRMLDGGCDPAYLARRLTRMAIEDIGLADPR 315


>gi|332531345|ref|ZP_08407253.1| recombination factor protein RarA [Hylemonella gracilis ATCC 19624]
 gi|332039209|gb|EGI75627.1| recombination factor protein RarA [Hylemonella gracilis ATCC 19624]
          Length = 436

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 72/341 (21%), Positives = 113/341 (33%), Gaps = 60/341 (17%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACS---NLKVFIEAAKARAEALDHVLFVGPPGL 65
           S            LRP TL E  GQ         L++  E+ +         +  GPPG 
Sbjct: 4   SPPSPPHQPLAERLRPHTLGEVIGQQHLLGEGMPLRIAFESGQ-----PHSCILWGPPGT 58

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------EDRDVLFIDEIHRL 117
           GKTT+A+++A   G  F S S  V+    D+   +           + R ++F+DE+HR 
Sbjct: 59  GKTTIARLMADAFGAQFISISA-VLGGVKDIREAVELAEAARDGLQQQRTIVFVDEVHRF 117

Query: 118 SIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
           +   ++   P +E      +    E PS       LSR                      
Sbjct: 118 NKSQQDAFLPHVESGLFTFIGATTENPSFEVNSALLSR---------------------A 156

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGL-AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
               L     +DLK IV R   +  +  + D A   +   + G  R     L  +   A 
Sbjct: 157 AVYVLQALTEDDLKQIVLRARGIDAVPPLEDAALDRLIAYADGDARRLLNTLETLSVAAR 216

Query: 235 VAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRD 294
               + I  E     L                    + R   GG    +TISA     R 
Sbjct: 217 QQKQEQIRDEWLLKVLGER-----------------MRRYDKGGEQFYDTISALHKSVRG 259

Query: 295 AIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +  D    + ++       PR   R  + +A + +G+  P 
Sbjct: 260 SDPDAALYWFVRMLDGGADPRYMARRFVRMAAEDIGLADPR 300


>gi|313898685|ref|ZP_07832220.1| replication-associated recombination protein A [Clostridium sp.
           HGF2]
 gi|312956569|gb|EFR38202.1| replication-associated recombination protein A [Clostridium sp.
           HGF2]
          Length = 441

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 78/348 (22%), Positives = 142/348 (40%), Gaps = 61/348 (17%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M++  L  +N  Q+D   + LRP +L+++ GQ       K+     +   + +  ++F G
Sbjct: 1   MEQNSLF-QNDVQKDPLAARLRPASLQDYVGQKHLLGKGKILYNLIEK--DMVSSMIFWG 57

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIH 115
           PPG+GKTTLA+++AR+   +F + S  V +   ++ A++   ED      + ++F+DEIH
Sbjct: 58  PPGVGKTTLARIIARQTQAHFINFSA-VTSGIREIKAVMKEAEDARLYGRKTIVFVDEIH 116

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTL-----IAATTRVGLLTN 168
           R +   ++   P +E   + L+    E PS       LSR  +     +  +  V LL +
Sbjct: 117 RFNKAQQDAFLPYVEKGSIILIGATTENPSFEVNAALLSRCKVFVLKALEVSDLVELLKH 176

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            LQD                    +RG     + +T+E    +A+ + G  R A   L  
Sbjct: 177 ALQD--------------------ERGFGSQHVLITEEQLHMLAVFANGDARTALNTLEM 216

Query: 229 VRDFAEVAHAKTITREIADA---ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETI 285
           V    E + A  +  +       +   L  D+ G +  +L                   I
Sbjct: 217 VVLNGESSEAGIVITKEVLEQCTSQKSLLYDRQGEEHYNL-------------------I 257

Query: 286 SAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
           SA     R++  D    ++ +       P    R L+  A + +G+  
Sbjct: 258 SALHKSMRNSDVDAAIYWLARMLEAGEDPLYVARRLVRFASEDIGMAD 305


>gi|186475407|ref|YP_001856877.1| recombination factor protein RarA [Burkholderia phymatum STM815]
 gi|184191866|gb|ACC69831.1| AAA ATPase central domain protein [Burkholderia phymatum STM815]
          Length = 453

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 74/354 (20%), Positives = 127/354 (35%), Gaps = 63/354 (17%)

Query: 2   MDREGL-----------LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKAR 50
           M R+GL           +             LRPRT++E  GQ       K     A   
Sbjct: 1   MHRDGLYPKSRDYPQNAMFEETRANVPLAERLRPRTIDEVIGQKHLLGPNKPL-RVAFES 59

Query: 51  AEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------ 104
            EA   ++  GPPG+GKTTLA+++A      F + S  V++   D+   +   +      
Sbjct: 60  GEA-HSMILWGPPGVGKTTLARLMADAFHAQFIALSA-VLSGVKDIREAVETAQIHRANG 117

Query: 105 DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTR 162
            + ++F+DE+HR +   ++   P +E      +    E PS       LSR ++    + 
Sbjct: 118 HQTLVFVDEVHRFNKSQQDAFLPHVESGLFVFVGATTENPSFEVNSALLSRASVYVLKS- 176

Query: 163 VGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT-GLAVTDEAACEIAMRSRGTPRI 221
                                + ++ + ++ R  +   GL +TDEA   +   + G  R 
Sbjct: 177 --------------------LDTDEQRELLARAQQELGGLTLTDEARDALIGSADGDGRK 216

Query: 222 AGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVG 281
               +  V   A       I  E+  +AL                    + R   GG   
Sbjct: 217 LLNNMEIVARAAARQKKTEIDGELLASALSEN-----------------LRRFDKGGDAF 259

Query: 282 IETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            + ISA     R +  D    ++ +        R   R L+ +AW+ +G+  P 
Sbjct: 260 YDQISALHKSVRGSNPDGALYWLCRMLDGGADARYLSRRLVRMAWEDIGLADPR 313


>gi|291525969|emb|CBK91556.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [Eubacterium rectale DSM 17629]
 gi|291527297|emb|CBK92883.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [Eubacterium rectale M104/1]
          Length = 442

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 73/343 (21%), Positives = 125/343 (36%), Gaps = 44/343 (12%)

Query: 2   MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD    +     +    + S +RP TL+E  GQ       K+   A KA  + L  ++F 
Sbjct: 1   MDLFDYMREQNKETSGPLASRMRPTTLDEVVGQQHIVGKDKLLYRAIKA--DKLSSIIFY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDE 113
           GPPG GKTTLA+V+A      F   +    A   D+  ++          + + +LFIDE
Sbjct: 59  GPPGTGKTTLAKVIAHTTSAEFMQINA-TSAGKKDMEEVVEQAKNNQGMYQKKTILFIDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++ L P +ED  + L+    E P        LSR                  
Sbjct: 118 IHRFNKGQQDYLLPFVEDGTIILIGATTENPYFEVNGALLSR------------------ 159

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
               +   L     +D+K +++R    T   +    A            ++    R    
Sbjct: 160 ---SVIFELKKLSTDDIKVLLKRALTDTEKGMGAYNAQIDDDALDFLADVSNGDARAALT 216

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
             E+     +T + +D  ++ +       D         +      G    +TISA +  
Sbjct: 217 AIEL---GVLTTDRSDDGIIHIT-----IDVASECIQKRVISYDKKGDNHYDTISAFIKS 268

Query: 292 PRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
            R +  D    Y+ +  +     +   R +M +A + +G   P
Sbjct: 269 MRGSDPDAAVYYLARMLYAGEDVKFIARRIMILASEDIGNADP 311


>gi|331000051|ref|ZP_08323746.1| recombination factor protein RarA [Parasutterella excrementihominis
           YIT 11859]
 gi|329572935|gb|EGG54555.1| recombination factor protein RarA [Parasutterella excrementihominis
           YIT 11859]
          Length = 484

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 77/332 (23%), Positives = 117/332 (35%), Gaps = 50/332 (15%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
            Q       LRP+T++E  GQ       K    A +        ++  GPPG+GKTTLA+
Sbjct: 33  DQASPLAERLRPKTIDEVVGQKHLLGPGKPLRSAFENAH--PHSMILWGPPGVGKTTLAR 90

Query: 73  VVARELGVNFRSTSGPVIAKAGDLA-------ALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           ++A   G+ F S S  V+    D+        A         V+F+DE+HR S   ++  
Sbjct: 91  LMADAFGLPFISISA-VLGGVKDIRDAVEKATANREKTGRSTVVFVDEVHRFSKSQQDAF 149

Query: 126 YPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
            P +E      +    E PS   +   LSR T+    +        L  R          
Sbjct: 150 LPHVESGLFTFIGATTENPSFEVISALLSRSTVYVLESLKEEDLEELLHR---------- 199

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
                   ++R  +  GL V +EA   +   + G  R     L      A+    K I  
Sbjct: 200 -------ALER--EYLGLKVNEEAEKILIGLADGDARRFLNALEVSATMAKDRGIKVIDE 250

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           +   AAL                    I R   GG    + ISA     R +  D    +
Sbjct: 251 KFVRAALPA-----------------TIRRFDKGGDNFYDQISALHKSVRGSDPDAALYW 293

Query: 304 MIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           M +       P    R LM ++ + +G+  P 
Sbjct: 294 MCRMLDGGVDPLYIARRLMRMSIEDIGLADPR 325


>gi|226311479|ref|YP_002771373.1| hypothetical protein BBR47_18920 [Brevibacillus brevis NBRC 100599]
 gi|226094427|dbj|BAH42869.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 452

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 77/332 (23%), Positives = 130/332 (39%), Gaps = 51/332 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP+T+++  GQ    +  K+   A +A  + +  V+F GPPG GKTTLA+V+AR
Sbjct: 19  PLAARMRPQTIQDVIGQSHILAPGKLLRRAIEA--DQVSSVIFYGPPGTGKTTLAKVIAR 76

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVL-------FIDEIHRLSIIVEEILYPAM 129
               +F   +  V A   D+  ++   ++R V+       F+DEIHR +   ++ L P +
Sbjct: 77  TTRTHFSELNA-VTAGVADIRKVVDAAKERLVMDSQRTTLFVDEIHRFNKSQQDALLPYV 135

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E+  + L+    E P        LSR  + +  +        + DR              
Sbjct: 136 EEGTIILIGATTENPFFEVNPALLSRSQVFSLQSLSHEELKQVMDR-------------- 181

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK--TITREI 245
             T  + G     + V  EAA  +   + G  R     L       +       T+T ++
Sbjct: 182 ALTDEENGLAELFVTVEPEAAEHLVQYAEGDARRLLNALELAVTTTQPGADGRITVTLDV 241

Query: 246 ADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           A  ++ R A   DK G +  D                   TISA +   R +  D    +
Sbjct: 242 AVESIQRRAVRYDKSGDNHYD-------------------TISAFIKSIRGSDPDAALYW 282

Query: 304 MIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           + +       PR   R L+  A + +G   P 
Sbjct: 283 LARMIDAGEDPRFISRRLVISASEDIGNADPQ 314


>gi|157962052|ref|YP_001502086.1| recombination factor protein RarA [Shewanella pealeana ATCC 700345]
 gi|157847052|gb|ABV87551.1| AAA ATPase central domain protein [Shewanella pealeana ATCC 700345]
          Length = 443

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 77/327 (23%), Positives = 123/327 (37%), Gaps = 47/327 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP TLE++ GQ       K   +A +A       ++F GPPG GKTTLA++VAR
Sbjct: 14  PLAARMRPETLEQYIGQTHLLGEGKPLRQALEAGRA--HSMMFWGPPGTGKTTLAELVAR 71

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAM 129
               +    S  V +   ++ + + + +        R +LF+DE+HR +   ++   P +
Sbjct: 72  YANAHVERISA-VTSGVKEIRSAIEHAKNVAQSRGQRTLLFVDEVHRFNKSQQDAFLPFI 130

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ED  +  +    E PS       LSR        RV ++     D  G  ++    + E 
Sbjct: 131 EDGTVIFIGATTENPSFEINNALLSR-------ARVYVIKQLEADEIGQIVQQALKDEE- 182

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
                 RG       +  + A ++A    G  R A  L+  + D  +   A T    +  
Sbjct: 183 ------RGLGKRKFLLPPDVALKLAQTCDGDARKALNLIELMSDMLKDGEAFTEEMIVQV 236

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           A       DK G    DL                   ISA     R +  D    +  + 
Sbjct: 237 AGQQLAGFDKNGDQYYDL-------------------ISAVHKSIRGSAPDAALYWYCRM 277

Query: 308 GFIQRTPR--GRLLMPIAWQHLGIDIP 332
                 P   GR L+ IA + +G   P
Sbjct: 278 LEGGCDPLYIGRRLLAIASEDIGNADP 304


>gi|114332440|ref|YP_748662.1| recombination factor protein RarA [Nitrosomonas eutropha C91]
 gi|114309454|gb|ABI60697.1| Recombination protein MgsA [Nitrosomonas eutropha C91]
          Length = 438

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 68/330 (20%), Positives = 118/330 (35%), Gaps = 54/330 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP+TL+   GQ     + K    A    +     ++  GPPG GKTTLA+++A+
Sbjct: 13  PLAERLRPQTLDNVIGQPHLLGSGKPLRLAFI--SGKPHSMILWGPPGSGKTTLARLMAQ 70

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAM 129
                F + S  V++   D+   +              +LF+DE+HR +   ++   P +
Sbjct: 71  AFDTEFIAISA-VLSGVKDIREAIERARFALQHTGRSTLLFVDEVHRFNKAQQDAFLPHV 129

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E   +  +    E PS       LSR  +           N L D              +
Sbjct: 130 EQGLITFIGATTENPSFEVNGALLSRAQVYTL--------NALTDP-------------E 168

Query: 188 LKTIVQRGAK--LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           L  + +R  K  ++ L    +A   +   + G  R    +L +V+  A+      I    
Sbjct: 169 LHQLFERACKIAISNLQFDPDAVELLVKFADGDARRLLNMLEQVKHAADTEKTVKIDIA- 227

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
                            L+   +  + +   GG    + ISA     R +  D    ++ 
Sbjct: 228 ----------------YLNRVLMRNVRQFDKGGDAFYDQISALHKSIRGSSPDAALYWLC 271

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +       PR  GR L+  A + +G+  P 
Sbjct: 272 RMLDGGADPRYIGRRLVRTAAEDIGLADPR 301


>gi|313668375|ref|YP_004048659.1| AAA ATPase [Neisseria lactamica ST-640]
 gi|313005837|emb|CBN87292.1| putative AAA ATPase [Neisseria lactamica 020-06]
          Length = 436

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 72/333 (21%), Positives = 112/333 (33%), Gaps = 49/333 (14%)

Query: 12  VSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           V + DA +   LRP TL++  GQ       K    A +        +L  GPPG+GKTTL
Sbjct: 6   VREPDAPLAERLRPHTLDDVVGQEHLIGEGKPLRVAVE--GGKPHSMLLWGPPGVGKTTL 63

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEI 124
           A+++A+     F   S  V +   D+   +   E         +LF+DE+HR +   ++ 
Sbjct: 64  ARILAQSFNAQFLPVSA-VFSGVKDIRGAIDKAEIALQQGRATILFVDEVHRFNKAQQDA 122

Query: 125 LYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             P +E   L  +    E PS       LSR  +             L  +         
Sbjct: 123 FLPYVERGLLTFIGATTENPSFEVNPALLSRAQVYVLQPLSSDGLKKLVAKVLALPEYRD 182

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           + IE         A+   +   D  A  +                     A+    KT+T
Sbjct: 183 FTIEA-------DAQELLVNTADGDARRLLNLLEQL-----------LRAADTRRLKTLT 224

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            E    +L                    I R   GG      ISA     R +  +    
Sbjct: 225 AEFLADSLGAQ-----------------IRRFDKGGESFYNQISALHKSVRGSHPNAALY 267

Query: 303 YMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +  +       PR   R ++ IAW+ +G+  P 
Sbjct: 268 WFCRMLDGGTDPRYLARRIVRIAWEDIGLADPR 300


>gi|290769987|gb|ADD61754.1| putative protein [uncultured organism]
          Length = 440

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 85/355 (23%), Positives = 135/355 (38%), Gaps = 66/355 (18%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD    +  N    ++ ++  LRP TL+E  GQ       K+   A KA  + L  V+F 
Sbjct: 1   MDLFEYMRENNKNTESPLAMRLRPETLDEMVGQSHIIGKDKLLYRAIKA--DKLSSVIFY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDE 113
           GPPG GKTTLA+++A      F   +  V A   D+  ++   +D       + +LF+DE
Sbjct: 59  GPPGTGKTTLARIIANTTSAEFNQVNATV-AGKKDMEEVVAKAKDNLGMYGRKTILFVDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++ L P +ED  + L+    E P        +SR                  
Sbjct: 118 IHRFNKGQQDYLLPFVEDGTIILIGATTENPYFEVNGALISR------------------ 159

Query: 172 DRFGIPIRLNFYEIEDLKTIVQR-------GAKLTGLAVTDEAACEIAMRSRGTPRIAGR 224
               I   L   E ED+KTI++R       G      A+ D+A   +A  S G  R A  
Sbjct: 160 ---SIIFELKPLEKEDIKTIIKRAVYDEKKGMGSYNAAIDDDALEFLADISNGDARNALN 216

Query: 225 LLRRVRDFAEVAHAKTITRE----IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV 280
            +       + +    I  +            +  DK G +  D                
Sbjct: 217 AIELGILTTDRSDDGVIHIDLATAQECIQKRSVRYDKEGDNHYD---------------- 260

Query: 281 GIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
              TISA +   R +  D +  Y+ +  +     +   R +M  A + +G   P+
Sbjct: 261 ---TISAFIKSMRGSDPDAVSYYLAKMLYAGEDIKFIARRIMICASEDVGNADPN 312


>gi|238924907|ref|YP_002938423.1| recombination factor protein RarA [Eubacterium rectale ATCC 33656]
 gi|238876582|gb|ACR76289.1| recombination factor protein RarA [Eubacterium rectale ATCC 33656]
          Length = 442

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 73/343 (21%), Positives = 125/343 (36%), Gaps = 44/343 (12%)

Query: 2   MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD    +     +    + S +RP TL+E  GQ       K+   A KA  + L  ++F 
Sbjct: 1   MDLFDYMREQNKETSGPLASRMRPTTLDEVVGQQHIVGKDKLLYRAIKA--DKLSSIIFY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDE 113
           GPPG GKTTLA+V+A      F   +    A   D+  ++          + + +LFIDE
Sbjct: 59  GPPGTGKTTLAKVIAHTTSAEFMQINA-TSAGKKDMEEVVEQAKNNQGMYQKKTILFIDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++ L P +ED  + L+    E P        LSR                  
Sbjct: 118 IHRFNKGQQDYLLPFVEDGTIILIGATTENPYFEVNGALLSR------------------ 159

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
               +   L     +D+K +++R    T   +    A            ++    R    
Sbjct: 160 ---SVIFELKKLSTDDIKVLLKRALTDTEKGMGAYNAQIDDDALDFLADVSNGDARAALT 216

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
             E+     +T + +D  ++ +       D         +      G    +TISA +  
Sbjct: 217 AIEL---GVLTTDRSDDGIIHIT-----IDVASECIQKRVISYDKKGDNHYDTISAFIKS 268

Query: 292 PRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
            R +  D    Y+ +  +     +   R +M +A + +G   P
Sbjct: 269 MRGSDPDAAVYYLARMLYAGEDVKFIARRIMILASEDIGNADP 311


>gi|227509636|ref|ZP_03939685.1| recombination ATPase [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227190998|gb|EEI71065.1| recombination ATPase [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 441

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 78/343 (22%), Positives = 132/343 (38%), Gaps = 50/343 (14%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M ++ L + N          +RP+TL +F GQ       KV  E  +  ++ L  ++F G
Sbjct: 1   MKQQSLFAANDLATQPLAYRVRPQTLADFAGQQHLLGKGKVLREIIE--SDQLPSMIFWG 58

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIH 115
           PPG GKTTLA+++A++    F + S  V +   D+  L+ + E       + ++F+DEIH
Sbjct: 59  PPGSGKTTLAEIIAKKTKAKFVTFSA-VTSGIRDIRKLMKDAEANRDMGGKTIVFVDEIH 117

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P +E   + L+    E PS       LSR  +         +  PLQ  
Sbjct: 118 RFNKAQQDAFLPFVEKGSITLIGATTENPSFEINAALLSRCKV--------FVLQPLQVT 169

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
             I +  +     D       G     + +  EA  +IA  + G  RIA   L    + +
Sbjct: 170 DIIQLIKHALVHPD-------GFAKQHVEIDGEAIRQIAEFANGDARIALNTLEMAVNNS 222

Query: 234 EVAHAKTITRE---IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
           E +  +            A      DK G +  +L                   ISA   
Sbjct: 223 EKSGDRIRVSTDNLHQLMATKSFLYDKSGEEHYNL-------------------ISALHK 263

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
             R++  D    ++ +       P    R L+  A + +G+  
Sbjct: 264 SMRNSDADAAVYWLSRMMNGGEDPLYIARRLVRFASEDIGLAD 306


>gi|325263700|ref|ZP_08130433.1| ATPase, AAA family [Clostridium sp. D5]
 gi|324030738|gb|EGB92020.1| ATPase, AAA family [Clostridium sp. D5]
          Length = 438

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 79/343 (23%), Positives = 136/343 (39%), Gaps = 44/343 (12%)

Query: 2   MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD    +     ++++ + S +RP +LEE  GQ       K+   A KA  + L  ++F 
Sbjct: 1   MDLFDYMRETTKEKESPLASRMRPSSLEEVVGQQHIIGRDKLLYRAIKA--DKLGSLIFY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDE 113
           GPPG GKTTLA+V+A      F+  +   IA   D+  ++   ++       + +LFIDE
Sbjct: 59  GPPGTGKTTLAKVIANTTSAEFKQINA-TIAGKKDMEEVVKGAKELLGMYQKKTILFIDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++ L P +ED  + L+    E P        LSR       + V  L +  +
Sbjct: 118 IHRFNKGQQDYLLPYVEDGTITLIGATTENPYFEVNGALLSR-------SSVFELKSLSR 170

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
           +     ++   Y+ E       +G       +T++A   +A  S G  R A   +     
Sbjct: 171 EDVKTLLKRAVYDKE-------KGMGTFKAEITEDALEFLADVSGGDARNALNAVEL--- 220

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
                    +T E +   L+ +       D         + R    G    +T SA +  
Sbjct: 221 -------GILTTERSADGLIHIT-----LDVASECIQKRVVRYDKTGDNHYDTSSAFIKS 268

Query: 292 PRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
            R +  D    Y+ +  +     +   R +M  A + +G   P
Sbjct: 269 MRGSDPDAAVYYLAKMLYAGEDIKFIARRIMICASEDVGNADP 311


>gi|289666013|ref|ZP_06487594.1| recombination factor protein RarA [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 436

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 72/327 (22%), Positives = 120/327 (36%), Gaps = 45/327 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RPRTL+E  GQ    +       A +  +  +  ++  GPPG GKTTLA ++A 
Sbjct: 3   PLAERMRPRTLDEMVGQKRLLAPDSALRRAVE--SGRVHSMILWGPPGCGKTTLALLLAH 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAME 130
                F++ S  V++   ++  +L           R VLF+DE+HR +   ++   P +E
Sbjct: 61  YADAEFKAISA-VLSGLPEVRQVLAEAAQRFAGGRRTVLFVDEVHRFNKAQQDAFLPHIE 119

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
              +  +    E PS       LSR  +                  G+  +     ++  
Sbjct: 120 RGTILFVGATTENPSFELNSALLSRCRVHVLE--------------GVSPQDIVEALQRA 165

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
               +RG     + V++ A  EIA  + G  R A  LL    + A          EI   
Sbjct: 166 LHDAERGLGQQTIQVSEAALLEIASAADGDVRRALTLLEIAAELAMGEGG-----EITPR 220

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            LL++  D+               R    G    + ISA     R +  D    ++ +  
Sbjct: 221 TLLQVLADRT-------------RRFDKNGEQFYDQISALHKSVRSSNPDAALYWLTRML 267

Query: 309 FIQRTP--RGRLLMPIAWQHLGIDIPH 333
                P    R L  +A + +G+  P 
Sbjct: 268 DGGCDPAYLARRLTRMAIEDIGLADPR 294


>gi|254786027|ref|YP_003073456.1| recombination factor protein RarA [Teredinibacter turnerae T7901]
 gi|237686731|gb|ACR13995.1| ATPase, AAA family [Teredinibacter turnerae T7901]
          Length = 447

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 71/335 (21%), Positives = 116/335 (34%), Gaps = 48/335 (14%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
            N    +   + LRPR L+E+ GQ       K   +A       +  ++  GPPG+GKT+
Sbjct: 10  SNAGHFEPLAARLRPRNLDEYLGQEHLLGAGKPLRQAI--AHGQIHSMILWGPPGIGKTS 67

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLA-------ALLTNLEDRDVLFIDEIHRLSIIVE 122
           LA+++A E    F S S  V+A   D+                + +LF+DE+HR +   +
Sbjct: 68  LARLLANEANAFFLSISA-VLAGVKDIRDAVQQARQQQQAYGRKTILFVDEVHRFNKSQQ 126

Query: 123 EILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +   P +ED  +  +    E PS       LSR  +         +     D   + +  
Sbjct: 127 DAFLPYVEDGTILFVGATTENPSFEVNNALLSRCRV--------YVLQRFSDEQQVQLID 178

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
                E       RG     L + D     +   + G  R    LL    D  +      
Sbjct: 179 KALSSE-------RGLVSKQLKIADAERKLLVQAADGDARRLLNLLEIASDLLDTGG--- 228

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
                            +G D L       + R   GG +  E ISA     R +  D  
Sbjct: 229 ----------------TLGADVLAQVLTGDVRRFDKGGDLFYEQISALHKSVRGSDPDAA 272

Query: 301 EPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
             + ++       P    R ++ +A + +G   P 
Sbjct: 273 LYWFVRMLDGGCDPLYIARRVVRMASEDIGNADPR 307


>gi|221632458|ref|YP_002521679.1| recombination factor protein RarA [Thermomicrobium roseum DSM 5159]
 gi|221157227|gb|ACM06354.1| ATPase, aaa family [Thermomicrobium roseum DSM 5159]
          Length = 450

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 81/330 (24%), Positives = 125/330 (37%), Gaps = 52/330 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RPRTL+E  GQ        +     +   + L  ++  GPPG GKTTLA+++A+
Sbjct: 18  PLAERMRPRTLDEVVGQEHVLGPGALLRSLIER--DQLVSLILWGPPGCGKTTLARLIAK 75

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAM 129
               +       V A   D+  ++            R ++FIDEIHR +   ++ L PA+
Sbjct: 76  HT-RSAFVPLSAVSASVADIRRVVQEASDRFAQHGQRTIVFIDEIHRFNRAQQDALLPAV 134

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ED  + L+    E PS       LSR  ++           PL D+    +      +E 
Sbjct: 135 EDGTIVLIGATTENPSFEINAPLLSRCRVVVL--------EPLSDQAIQTL------VER 180

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
                +RG    GL +  EA   +   + G  R+A   L      A  A   TIT E+  
Sbjct: 181 ALVDRERGLGELGLRIEPEALRLLVGLANGDARMALNTLEVA---AAGAQEGTITVELVH 237

Query: 248 AALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
            A +R     D+ G    D                   TISA     R +  D    ++ 
Sbjct: 238 QAAMRRGSVYDRAGDAHYD-------------------TISALHKAIRGSDPDAALYWLA 278

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +       P    R L+  A + +G+  PH
Sbjct: 279 RMLEHGDDPLYVARRLVRAASEDIGLADPH 308


>gi|303257968|ref|ZP_07343977.1| magnesium chelatase, subunit ChlI family [Burkholderiales bacterium
           1_1_47]
 gi|302859311|gb|EFL82393.1| magnesium chelatase, subunit ChlI family [Burkholderiales bacterium
           1_1_47]
          Length = 484

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 77/332 (23%), Positives = 117/332 (35%), Gaps = 50/332 (15%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
            Q       LRP+T++E  GQ       K    A +        ++  GPPG+GKTTLA+
Sbjct: 33  DQASPLAERLRPKTIDEVVGQKHLLGPGKPLRSAFENAH--PHSMILWGPPGVGKTTLAR 90

Query: 73  VVARELGVNFRSTSGPVIAKAGDLA-------ALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           ++A   G+ F S S  V+    D+        A         V+F+DE+HR S   ++  
Sbjct: 91  LMADAFGLPFISISA-VLGGVKDIRDAVEKATANREKTGRSTVVFVDEVHRFSKSQQDAF 149

Query: 126 YPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
            P +E      +    E PS   +   LSR T+    +        L  R          
Sbjct: 150 LPHVESGLFTFIGATTENPSFEVISALLSRSTVYVLESLKEEDLEELLHR---------- 199

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
                   ++R  +  GL V +EA   +   + G  R     L      A+    K I  
Sbjct: 200 -------ALER--EYLGLKVNEEAEKILIGLADGDARRFLNALEVSATMAKDRGIKVIDE 250

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           +   AAL                    I R   GG    + ISA     R +  D    +
Sbjct: 251 KFVRAALPA-----------------TIRRFDKGGDNFYDQISALHKSVRGSDPDAALYW 293

Query: 304 MIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           M +       P    R LM ++ + +G+  P 
Sbjct: 294 MCRMLDGGVDPLYIARRLMRMSIEDIGLADPR 325


>gi|289829035|ref|ZP_06546731.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
          Length = 131

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 71/129 (55%), Positives = 90/129 (69%)

Query: 205 DEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLD 264
           D+ A E+A R+RGTPRIA RLLRRVRDFAEV H   I+ EIA  AL  L +D  GFD +D
Sbjct: 1   DDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGAISAEIAAQALDMLNVDAEGFDYMD 60

Query: 265 LRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAW 324
            + L  +   F GGPVG++ ++A + E R+ IED++EPY+IQQGF+QRTPRGR+    AW
Sbjct: 61  RKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMATVRAW 120

Query: 325 QHLGIDIPH 333
            H GI  P 
Sbjct: 121 NHFGITPPE 129


>gi|161485713|ref|NP_642336.2| recombination factor protein RarA [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 457

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 72/327 (22%), Positives = 120/327 (36%), Gaps = 45/327 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RPRTL+E  GQ    +       A +  +  +  ++  GPPG GKTTLA ++A 
Sbjct: 24  PLAERMRPRTLDEMVGQKRLLAPDSALRRAVE--SGRVHSMILWGPPGCGKTTLALLLAH 81

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAME 130
                F++ S  V++   D+  +L           R VLF+DE+HR +   ++   P +E
Sbjct: 82  YADAEFKAISA-VLSGLPDVRQVLAEAAQRFAGGRRTVLFVDEVHRFNKAQQDAFLPHIE 140

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
              +  +    E PS       LSR  +                  G+  +     ++  
Sbjct: 141 RGTILFVGATTENPSFELNSALLSRCRVHVLE--------------GVSPQDIVEALQRA 186

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
               +RG     + V++ +  EIA  + G  R A  LL    + A          EI   
Sbjct: 187 LRDAERGLGAETIQVSEASLLEIASAADGDVRRALTLLEIAAELAAGEGG-----EITPQ 241

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            LL++  D+               R    G    + ISA     R +  D    ++ +  
Sbjct: 242 TLLQVLADRT-------------RRFDKNGEQFYDQISALHKSVRSSNPDAALYWLTRML 288

Query: 309 FIQRTP--RGRLLMPIAWQHLGIDIPH 333
                P    R L  +A + +G+  P 
Sbjct: 289 DGGCDPAYLARRLTRMAIEDIGLADPR 315


>gi|170726827|ref|YP_001760853.1| recombination factor protein RarA [Shewanella woodyi ATCC 51908]
 gi|169812174|gb|ACA86758.1| AAA ATPase central domain protein [Shewanella woodyi ATCC 51908]
          Length = 443

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 74/327 (22%), Positives = 118/327 (36%), Gaps = 47/327 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP  L ++ GQ       K   +A +A       ++F GPPG GKTTLA++VA 
Sbjct: 14  PLAARMRPEELSQYIGQSHLLGEGKPLRKALEAGRA--HSMMFWGPPGTGKTTLAELVAN 71

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAM 129
               +    S  V +   ++   + + +        R +LF+DE+HR +   ++   P +
Sbjct: 72  YANAHVERISA-VTSGVKEIRTAIEHAKNVAESRGQRTLLFVDEVHRFNKSQQDAFLPFI 130

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ED  +  +    E PS       LSR        RV L+     D   + +     ++E 
Sbjct: 131 EDGTVIFIGATTENPSFEINNALLSR-------ARVYLIKKLTNDEIVLIVNQALLDVE- 182

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
                 RG     L + D  A ++A    G  R A  L+  + D      + T    +  
Sbjct: 183 ------RGLGKRKLTIPDAVANKLANVCDGDARKALNLIELMSDMVADGESFTEEMIVEV 236

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           A       DK G    DL                   ISA     R +  D    +  + 
Sbjct: 237 AGQQLAGFDKNGDQYYDL-------------------ISAVHKSIRGSAPDAALYWFCRM 277

Query: 308 GFIQRTPR--GRLLMPIAWQHLGIDIP 332
                 P    R L+ IA + +G   P
Sbjct: 278 LEGGCDPLYIARRLLAIASEDIGNADP 304


>gi|145588933|ref|YP_001155530.1| recombination factor protein RarA [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|145047339|gb|ABP33966.1| Recombination protein MgsA [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 437

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 70/335 (20%), Positives = 119/335 (35%), Gaps = 50/335 (14%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           + +        LRP+T+ E  GQ    +  K    A    +     ++  GPPG+GKTTL
Sbjct: 6   DSTPTPPLAEALRPKTITEVIGQTHLLATGKPLNLA--FASGKPHSMILWGPPGVGKTTL 63

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEE 123
           A++ A+     F + S  V+A   ++   +   +          +LF+DEIHR +   ++
Sbjct: 64  ARLSAKAFDREFIAISA-VLAGVKEIRESIEQAQQNMAQYGKQTILFVDEIHRFNKSQQD 122

Query: 124 ILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
            L P +E      +    E PS       LSR  +    +        L DR       +
Sbjct: 123 ALLPHVESGLFTFIGATTENPSFEVNSALLSRAQVYVLKSLSADELKQLFDRAHQFAMPD 182

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
                              +   D A   +   + G  R    L+ ++R+      A+  
Sbjct: 183 -------------------VTFEDSATETLISNADGDARRLLNLVEQIRNAVTTPGAEV- 222

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNF-GGGPVGIETISAGLSEPRDAIEDLI 300
                + A +  A             L+  AR F  GG    + ISA     R +  D  
Sbjct: 223 --ASVNQAFVESA-------------LSAQARRFDKGGDHFYDQISALHKSVRGSDPDAS 267

Query: 301 EPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
             +  +       PR   R ++ +AW+ +G+  P 
Sbjct: 268 LYWFCRMLDGGADPRYLARRIIRMAWEDIGLADPR 302


>gi|154706961|ref|YP_001424634.1| recombination factor protein RarA [Coxiella burnetii Dugway
           5J108-111]
 gi|154356247|gb|ABS77709.1| ATPase, AAA family [Coxiella burnetii Dugway 5J108-111]
          Length = 440

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 73/325 (22%), Positives = 119/325 (36%), Gaps = 41/325 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP  LEEF GQ       K    A +     L  ++  GPPG GKTTLA+++A+
Sbjct: 9   PLATRMRPGCLEEFVGQSHLLGKDKPLFRAIEK--GKLHSMILWGPPGSGKTTLAEIMAQ 66

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR----DVLFIDEIHRLSIIVEEILYPAMEDF 132
           + G    S S  V+A   D+  ++   E       +LF+DE+H  +   ++   P +E  
Sbjct: 67  KAGARVESISA-VLAGVKDIRDVVERAERHKGQATILFVDEVHGFNKSQQDAFLPHVEKG 125

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
            + L+    E PS +     LSR       TRV +L    +      +       E+   
Sbjct: 126 TITLIGATTENPSFQLNNALLSR-------TRVYVLKQLTEADLLSIL-------ENALA 171

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
             +RG     L + +     I   + G  R    LL  + DF                AL
Sbjct: 172 NEERGLGKKALEIPEPLRRRIVQFADGDARQCLNLLEIIADF----------------AL 215

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
                  +    +D      + R    G    + ISA     R +  D    ++ +    
Sbjct: 216 EENGRFVVDDGLIDKVLTEGLRRFDKRGEAFYDQISALHKSVRGSDPDASLYWLSRLLDG 275

Query: 311 QRTP--RGRLLMPIAWQHLGIDIPH 333
              P    R ++ +A + +G   P 
Sbjct: 276 GCDPFYVARRVVRMASEDIGNADPR 300


>gi|59801120|ref|YP_207832.1| recombination factor protein RarA [Neisseria gonorrhoeae FA 1090]
 gi|194098765|ref|YP_002001827.1| recombination factor protein RarA [Neisseria gonorrhoeae NCCP11945]
 gi|239999059|ref|ZP_04718983.1| recombination factor protein RarA [Neisseria gonorrhoeae 35/02]
 gi|240014030|ref|ZP_04720943.1| recombination factor protein RarA [Neisseria gonorrhoeae DGI18]
 gi|240016470|ref|ZP_04723010.1| recombination factor protein RarA [Neisseria gonorrhoeae FA6140]
 gi|240080592|ref|ZP_04725135.1| recombination factor protein RarA [Neisseria gonorrhoeae FA19]
 gi|240113038|ref|ZP_04727528.1| recombination factor protein RarA [Neisseria gonorrhoeae MS11]
 gi|240115795|ref|ZP_04729857.1| recombination factor protein RarA [Neisseria gonorrhoeae PID18]
 gi|240118091|ref|ZP_04732153.1| recombination factor protein RarA [Neisseria gonorrhoeae PID1]
 gi|240121596|ref|ZP_04734558.1| recombination factor protein RarA [Neisseria gonorrhoeae PID24-1]
 gi|240123645|ref|ZP_04736601.1| recombination factor protein RarA [Neisseria gonorrhoeae PID332]
 gi|240125829|ref|ZP_04738715.1| recombination factor protein RarA [Neisseria gonorrhoeae SK-92-679]
 gi|240128343|ref|ZP_04741004.1| recombination factor protein RarA [Neisseria gonorrhoeae
           SK-93-1035]
 gi|254493843|ref|ZP_05107014.1| recombination factor protein RarA [Neisseria gonorrhoeae 1291]
 gi|260440387|ref|ZP_05794203.1| recombination factor protein RarA [Neisseria gonorrhoeae DGI2]
 gi|268594903|ref|ZP_06129070.1| recombination factor protein RarA [Neisseria gonorrhoeae 35/02]
 gi|268596717|ref|ZP_06130884.1| recombination factor protein RarA [Neisseria gonorrhoeae FA19]
 gi|268599122|ref|ZP_06133289.1| recombination factor protein RarA [Neisseria gonorrhoeae MS11]
 gi|268601473|ref|ZP_06135640.1| recombination factor protein RarA [Neisseria gonorrhoeae PID18]
 gi|268603806|ref|ZP_06137973.1| recombination factor protein RarA [Neisseria gonorrhoeae PID1]
 gi|268682274|ref|ZP_06149136.1| recombination factor protein RarA [Neisseria gonorrhoeae PID332]
 gi|268684428|ref|ZP_06151290.1| recombination factor protein RarA [Neisseria gonorrhoeae SK-92-679]
 gi|268686740|ref|ZP_06153602.1| recombination factor protein RarA [Neisseria gonorrhoeae
           SK-93-1035]
 gi|291043684|ref|ZP_06569400.1| recombination factor protein RarA [Neisseria gonorrhoeae DGI2]
 gi|293398982|ref|ZP_06643147.1| ATPase [Neisseria gonorrhoeae F62]
 gi|59718015|gb|AAW89420.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
 gi|193934055|gb|ACF29879.1| Conserved hypothetical protein [Neisseria gonorrhoeae NCCP11945]
 gi|226512883|gb|EEH62228.1| recombination factor protein RarA [Neisseria gonorrhoeae 1291]
 gi|268548292|gb|EEZ43710.1| recombination factor protein RarA [Neisseria gonorrhoeae 35/02]
 gi|268550505|gb|EEZ45524.1| recombination factor protein RarA [Neisseria gonorrhoeae FA19]
 gi|268583253|gb|EEZ47929.1| recombination factor protein RarA [Neisseria gonorrhoeae MS11]
 gi|268585604|gb|EEZ50280.1| recombination factor protein RarA [Neisseria gonorrhoeae PID18]
 gi|268587937|gb|EEZ52613.1| recombination factor protein RarA [Neisseria gonorrhoeae PID1]
 gi|268622558|gb|EEZ54958.1| recombination factor protein RarA [Neisseria gonorrhoeae PID332]
 gi|268624712|gb|EEZ57112.1| recombination factor protein RarA [Neisseria gonorrhoeae SK-92-679]
 gi|268627024|gb|EEZ59424.1| recombination factor protein RarA [Neisseria gonorrhoeae
           SK-93-1035]
 gi|291012147|gb|EFE04136.1| recombination factor protein RarA [Neisseria gonorrhoeae DGI2]
 gi|291610396|gb|EFF39506.1| ATPase [Neisseria gonorrhoeae F62]
 gi|317164351|gb|ADV07892.1| recombination factor protein RarA [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 436

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 70/333 (21%), Positives = 111/333 (33%), Gaps = 49/333 (14%)

Query: 12  VSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           V + DA +   LRP TL++  GQ       K    A +        +L  GPPG+GKTTL
Sbjct: 6   VREPDAPLAERLRPHTLDDVIGQQHLIGEGKPLRVAVE--GGKPHSMLLWGPPGVGKTTL 63

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEI 124
           A+++A+     F   S  V +   D+   +   E         +LF+DE+HR +   ++ 
Sbjct: 64  ARILAQSFNAQFLPVSA-VFSGVKDIRGAIDKAEIALQQGRATILFVDEVHRFNKAQQDA 122

Query: 125 LYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             P +E   L  +    E PS       LSR  +    +        L  +         
Sbjct: 123 FLPHVESGLLTFIGATTENPSFEVNPALLSRAQVYVLQSLSSDDLKKLIAKVLALPEYRD 182

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           + IE          +   +   D  A  +                     A+    K +T
Sbjct: 183 FTIEA-------DVQELLVNTADGDARRLLNLLEQL-----------LRAADTRRLKILT 224

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            E    +L                    I R   GG      ISA     R +  +    
Sbjct: 225 TEFLADSLGAQ-----------------IRRFDKGGESFYNQISALHKSVRGSHPNAALY 267

Query: 303 YMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +  +       PR   R ++ IAW+ +G+  P 
Sbjct: 268 WFCRMLDGGTDPRYLARRIVRIAWEDIGLADPR 300


>gi|319937217|ref|ZP_08011624.1| ATPase [Coprobacillus sp. 29_1]
 gi|319807583|gb|EFW04176.1| ATPase [Coprobacillus sp. 29_1]
          Length = 442

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 74/343 (21%), Positives = 130/343 (37%), Gaps = 52/343 (15%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M++  L  +N SQE    S LRP+TL ++ GQ       K+  +  +   + +  ++F G
Sbjct: 1   MEQTSLF-QNQSQE-PLASRLRPQTLSDYVGQKHLIGQGKILWQLIE--HDQISSMIFWG 56

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIH 115
           PPG+GKTTLA+++A      F   S  V +   D+ A++   ++      R ++F+DEIH
Sbjct: 57  PPGVGKTTLARIIANCTQSEFIDFSA-VTSGIKDIKAVMKQAQEKQMMGIRTIVFVDEIH 115

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P +E   + L+    E PS       LSR  +         + + L+  
Sbjct: 116 RFNKAQQDAFLPYVEQGSIILIGATTENPSFEINSALLSRCKV--------FVLHGLEIE 167

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
             + +  +    E        G     + + D     IA  S G  R+A   L       
Sbjct: 168 DILDLLKHALSSEQ-------GFGNENIEIEDNGLYMIASFSNGDARMALNTLEMAVLNG 220

Query: 234 EVAHAKTITREIADAAL---LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
           E    K +  +              DK G +  ++                   ISA   
Sbjct: 221 EQQENKIVISQKIIEECTNRKSFLYDKKGEEHYNI-------------------ISALHK 261

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
             R++  D    ++ +       P    R L+  A + +G+  
Sbjct: 262 SMRNSDVDAAIYWLARMLEAGEDPLYIARRLVRFASEDIGMTD 304


>gi|261401234|ref|ZP_05987359.1| replication-associated recombination protein A [Neisseria lactamica
           ATCC 23970]
 gi|269208822|gb|EEZ75277.1| replication-associated recombination protein A [Neisseria lactamica
           ATCC 23970]
          Length = 436

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 69/333 (20%), Positives = 113/333 (33%), Gaps = 49/333 (14%)

Query: 12  VSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           V + DA +   LRP TL++  GQ       K    A +        +L  GPPG+GKTTL
Sbjct: 6   VREPDAPLAERLRPHTLDDVVGQEHLIGEGKPLRVAVE--GGKPHSMLLWGPPGVGKTTL 63

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEI 124
           A+++A+     F   S  V +   D+   +   E         +LF+DE+HR +   ++ 
Sbjct: 64  ARILAQSFNAQFLPVSA-VFSGVKDIRGAIDKAEIALQQGRATILFVDEVHRFNKAQQDA 122

Query: 125 LYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             P +E+  L  +    E PS       LSR  +             L  +         
Sbjct: 123 FLPYVENGLLTFIGATTENPSFEVNPALLSRAQVYVLQPLSSDGLKKLIAKVSALPEYRN 182

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           + IE          +L       +A   + +  +    +  R L+ +             
Sbjct: 183 FTIEA------DAQELLVNTADGDARRLLNLLEQLLRAVDTRRLKNLTT----------- 225

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
                        D +G           I R   GG      ISA     R +  +    
Sbjct: 226 ---------EFLADSLGAQ---------IRRFDKGGESFYNQISALHKSVRGSHPNAALY 267

Query: 303 YMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +  +       PR   R ++ IAW+ +G+  P 
Sbjct: 268 WFCRMLDGGTDPRYLARRIVRIAWEDIGLADPR 300


>gi|164685937|ref|ZP_01946864.2| ATPase, AAA family [Coxiella burnetii 'MSU Goat Q177']
 gi|165919023|ref|ZP_02219109.1| ATPase, AAA family [Coxiella burnetii RSA 334]
 gi|164601458|gb|EAX32492.2| ATPase, AAA family [Coxiella burnetii 'MSU Goat Q177']
 gi|165917278|gb|EDR35882.1| ATPase, AAA family [Coxiella burnetii RSA 334]
          Length = 440

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 73/325 (22%), Positives = 119/325 (36%), Gaps = 41/325 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP  LEEF GQ       K    A +     L  ++  GPPG GKTTLA+++A+
Sbjct: 9   PLATRMRPGCLEEFVGQSHLLGKDKPLFRAIEK--GKLHSMILWGPPGSGKTTLAEIMAQ 66

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR----DVLFIDEIHRLSIIVEEILYPAMEDF 132
           + G    S S  V+A   D+  ++   E       +LF+DE+H  +   ++   P +E  
Sbjct: 67  KAGARVESISA-VLAGVKDIRDVVERAERHKGQATILFVDEVHGFNKSQQDAFLPHVEKG 125

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
            + L+    E PS +     LSR       TRV +L    +      +       E+   
Sbjct: 126 TITLIGATTENPSFQLNNALLSR-------TRVYVLKQLTEADLLSIL-------ENALA 171

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
             +RG     L + +     I   + G  R    LL  + DF                AL
Sbjct: 172 NEERGLGKKALEIPEPLRRRIVQFADGDARQCLNLLEIIADF----------------AL 215

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
                  +    +D      + R    G    + ISA     R +  D    ++ +    
Sbjct: 216 EENGRFVVDDGLIDKVLTEGLRRFDKRGEAFYDQISALHKSVRGSDPDASLYWLSRLLDG 275

Query: 311 QRTP--RGRLLMPIAWQHLGIDIPH 333
              P    R ++ +A + +G   P 
Sbjct: 276 GCDPFYVARRVVRMASEDIGNADPR 300


>gi|212212420|ref|YP_002303356.1| recombination factor protein RarA [Coxiella burnetii CbuG_Q212]
 gi|212010830|gb|ACJ18211.1| ATPase, AAA family [Coxiella burnetii CbuG_Q212]
          Length = 427

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 73/320 (22%), Positives = 119/320 (37%), Gaps = 41/320 (12%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP +LEEF GQ       K    A +     L  ++  GPPG GKTTLA+++A++ G  
Sbjct: 1   MRPGSLEEFVGQSHLLGKDKPLFRAIEK--GKLHSMILWGPPGSGKTTLAEIMAQKAGAR 58

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR----DVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
             S S  V+A   D+  ++   E       +LF+DE+H  +   ++   P +E   + L+
Sbjct: 59  VESISA-VLAGVKDIRDVVERAERHKGQATILFVDEVHGFNKSQQDAFLPHVEKGTITLI 117

Query: 138 --VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
               E PS +     LSR       TRV +L    +      +       E+     +RG
Sbjct: 118 GATTENPSFQLNNALLSR-------TRVYVLKQLTEADLLSIL-------ENALANEERG 163

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255
                L + +     I   + G  R    LL  + DF                AL     
Sbjct: 164 LGKKALEIPEPLRRRIVQFADGDARQCLNLLEIIADF----------------ALEENGR 207

Query: 256 DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP- 314
             +    +D      + R    G    + ISA     R +  D    ++ +       P 
Sbjct: 208 FVVDDGLIDKVLTEGLRRFDKRGEAFYDQISALHKSVRGSDPDASLYWLSRLLDGGCDPF 267

Query: 315 -RGRLLMPIAWQHLGIDIPH 333
              R ++ +A + +G   P 
Sbjct: 268 YVARRVVRMASEDIGNADPR 287


>gi|161898988|ref|YP_201181.2| recombination factor protein RarA [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|162319801|ref|YP_451430.2| recombination factor protein RarA [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|188576725|ref|YP_001913654.1| recombination factor protein RarA [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188576916|ref|YP_001913845.1| recombination factor protein RarA [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188521177|gb|ACD59122.1| ATPase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188521368|gb|ACD59313.1| ATPase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 458

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 70/327 (21%), Positives = 119/327 (36%), Gaps = 45/327 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RPRTL++  GQ    +       A +  +  +  ++  GPPG GKTTLA ++A 
Sbjct: 24  PLAERMRPRTLDDMVGQKRLLAPDSALRRAVE--SGRVHSMILWGPPGCGKTTLALLLAH 81

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAME 130
                F + S  V++   ++  +L           R VLF+DE+HR +   ++   P +E
Sbjct: 82  YADAEFNAISA-VLSGLPEVRQVLAEAAQRFAGGRRTVLFVDEVHRFNKAQQDAFLPHIE 140

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
              +  +    E PS       LSR  +                  G+  +     ++  
Sbjct: 141 RGTILFVGATTENPSFELNSALLSRCRVHVLE--------------GVSPQDIVEALQRA 186

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
               +RG     + V++ +  EIA  + G  R A  LL    + A          EI   
Sbjct: 187 LHDAERGLGQQTIQVSEASLLEIASAADGDVRRALTLLEIAAELATGEGG-----EITPR 241

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            LL++  D+               R    G    + ISA     R +  D    ++ +  
Sbjct: 242 TLLQVLADRT-------------RRFDKNGEQFYDQISALHKSVRSSNPDAALYWLTRML 288

Query: 309 FI--QRTPRGRLLMPIAWQHLGIDIPH 333
                 T   R L  +A + +G+  P 
Sbjct: 289 DGGCDPTYLARRLTRMAIEDIGLADPR 315


>gi|320528095|ref|ZP_08029260.1| recombination factor protein RarA [Solobacterium moorei F0204]
 gi|320131443|gb|EFW24008.1| recombination factor protein RarA [Solobacterium moorei F0204]
          Length = 446

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 80/344 (23%), Positives = 129/344 (37%), Gaps = 44/344 (12%)

Query: 2   MDREGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD  G  S    + E+   + +RP TLEE  GQ       K+   A KA  + L  ++F 
Sbjct: 1   MDLFGYASEETKKKEEPLAARMRPSTLEEVVGQEHIIGKDKLLYRAIKA--DKLGSLIFY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDE 113
           GPPG GKTTLAQV+A     +FR  +   IA   DL  ++T+        + + +LFIDE
Sbjct: 59  GPPGTGKTTLAQVIANSTSADFRQVNA-TIAGKKDLEQVITHAIDLMSMYQKKTILFIDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++ L P +ED  + L+    E P     +  +SR  +    +          
Sbjct: 118 IHRFNKGQQDYLLPYVEDGTIILIGATTENPYFEVNQALISRSRIFQLKS---------- 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
                         E++ T+++R A+     +  +        +     I     R   +
Sbjct: 168 -----------LTKENIMTLLKRAAEDAVKGIGKDNVILEEEAAEFLAEICDGDARAALN 216

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
             E+A   T   +             +    ++        R    G    +TISA +  
Sbjct: 217 ALELADLTTDRSD--------DGYIHITLSVVEECIQKKAIRYDKDGDNHYDTISAFIKS 268

Query: 292 PRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            R +  D    Y+ +        R   R +M  A +  G   P 
Sbjct: 269 MRGSDPDATLYYLARMLTAGEDVRFISRRIMIAAAEECGNADPR 312


>gi|298246048|ref|ZP_06969854.1| AAA ATPase central domain protein [Ktedonobacter racemifer DSM
           44963]
 gi|297553529|gb|EFH87394.1| AAA ATPase central domain protein [Ktedonobacter racemifer DSM
           44963]
          Length = 481

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 72/329 (21%), Positives = 118/329 (35%), Gaps = 42/329 (12%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +   S +RPRTL+E  GQ       K+     +  +  +  +LF GPPG GKTTL++ +A
Sbjct: 41  EPLASRMRPRTLDELLGQEHLLGPGKLLRRTIE--SGRVTSMLFWGPPGSGKTTLSEAIA 98

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPA 128
           R     F + S    A   DL  ++          + R +LFIDEIHR +   ++ + P 
Sbjct: 99  RHADARFVTLSA-TSAGVADLRRVVDEAAKLRQFSQRRTILFIDEIHRFNKAQQDAVLPH 157

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           +E   + L+    E PS       LSR  +               D   I        ++
Sbjct: 158 VERGTVTLIGATTENPSFEVNSALLSRCRVFVLKAL---------DEAQIVRI-----LQ 203

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
                 +RG     +   +EA   IA+ + G  R A  +L        V           
Sbjct: 204 RALEDSERGLGQYQITSDEEALQAIAIFASGDARTALNVLELAAQ--GVMSGGGTDERHI 261

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
             AL+   +                      G    + ISA     R +  D    ++++
Sbjct: 262 TLALVEEVMQHRAL------------LYDKSGDQHYDMISALHKSVRGSDPDGSLYWLVR 309

Query: 307 QGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                  P    R ++ +A + +G+  P 
Sbjct: 310 MLEAGEDPLYIARRVVRMAAEDIGLADPQ 338


>gi|307718299|ref|YP_003873831.1| ATPase, AAA family [Spirochaeta thermophila DSM 6192]
 gi|306532024|gb|ADN01558.1| ATPase, AAA family [Spirochaeta thermophila DSM 6192]
          Length = 745

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 72/345 (20%), Positives = 127/345 (36%), Gaps = 40/345 (11%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M   + L     S  ++   + +RPRTL+EF GQ       ++   A +A  + L  V+F
Sbjct: 1   MNRADNLFDAAKSLHDEPLAARMRPRTLDEFVGQEHILGPGRLLRRAIQA--DRLSSVIF 58

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFID 112
            GPPG GKTTLA+V+A      F S +  V++   ++ A +            R +LF+D
Sbjct: 59  YGPPGCGKTTLARVIANHTKSAFLSLNA-VLSGVQEVRAAIEKARQEMAYHGRRTILFVD 117

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           E+HR +   ++ L P +E+  + L+    + P        +SR  +   T          
Sbjct: 118 EVHRWNKAQQDALLPWVENGTVILIGATTQNPYFEVNSALISRSRIFQLT---------- 167

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
                          E L+TI +R  K                       +A    R + 
Sbjct: 168 -----------PLTREHLRTIAERALKDPERGYGKYRIIMDDDALEHLITVADGDARTLL 216

Query: 231 DFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
              E+A   T          +     ++  D +  + +         G    + ISA + 
Sbjct: 217 SAIELAVETTPDTFPPPEGEVIHITREVAEDSIQRKAVL----YDKEGDFHYDIISAFIK 272

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPRG--RLLMPIAWQHLGIDIPH 333
             R +  D    ++ +       P    R ++ +A + +G+  PH
Sbjct: 273 SLRGSDPDAAFYWLARMVDAGEDPHYIFRRMLILACEDVGMADPH 317


>gi|237733075|ref|ZP_04563556.1| ATPase [Mollicutes bacterium D7]
 gi|229383877|gb|EEO33968.1| ATPase [Coprobacillus sp. D7]
          Length = 440

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 76/344 (22%), Positives = 138/344 (40%), Gaps = 52/344 (15%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MM ++ +  +N+S E    + LRP TL E+ GQ       K+  +     ++ +  ++F 
Sbjct: 1   MMKQQAMF-KNMSNE-PLANRLRPTTLTEYVGQRHLIGPGKILYQLI--NSDVVPSMVFW 56

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEI 114
           GPPG+GKTTLA+++A +    F + S  V +   D+ A++   ++      + ++F+DEI
Sbjct: 57  GPPGVGKTTLARIIANQTKAKFINFSA-VTSGIKDIRAVMKQAQEVQDLGEKTIVFVDEI 115

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++   P +E   + L+    E PS       LSR  +               D
Sbjct: 116 HRFNKAQQDAFLPYVEQGSIILIGATTENPSFEINSALLSRCKVFVLKALTTD------D 169

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
            FG+              I  +G K   + + D+    IA  S G  R+A   L      
Sbjct: 170 LFGLL---------HYALISPKGFKDQNVMIDDDLLYMIAGFSNGDARVALNTLEMAVLN 220

Query: 233 AEVAHAK-TITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGL 289
             + H +  + +E  +  + + +   DK G +  ++                   ISA  
Sbjct: 221 GAITHDRIVVDKETIEQCINQKSLLYDKKGEEHYNI-------------------ISALH 261

Query: 290 SEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
              R++  D    +M +       P    R L+  A + +G+  
Sbjct: 262 KSMRNSDIDASIYWMSRMIEAGEDPLYVARRLIRFASEDIGMAD 305


>gi|253996802|ref|YP_003048866.1| recombination factor protein RarA [Methylotenera mobilis JLW8]
 gi|253983481|gb|ACT48339.1| AAA ATPase central domain protein [Methylotenera mobilis JLW8]
          Length = 435

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 70/340 (20%), Positives = 117/340 (34%), Gaps = 51/340 (15%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
             L   N  Q       LRP+ L+E  GQ       K    A   ++  L  ++  GPPG
Sbjct: 2   NSLFEPNTPQA-PLAERLRPKALDEVVGQSHLLGTGKPLRLA--FQSGKLPSMILWGPPG 58

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAAL-------LTNLEDRDVLFIDEIHRL 117
           +GKTTLA+++A      F   S  V++   D+          L     + +LF+DE+HR 
Sbjct: 59  VGKTTLARLIANTADAEFIPISA-VLSGIKDIREAVELAEHTLQQHRRKTILFVDEVHRF 117

Query: 118 SIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
           +   ++   P +E   +  +    E PS       LSR  +    +      + L DR  
Sbjct: 118 NKGQQDAFLPFVESGLITFIGATTENPSFEVNSALLSRAQVFVLNSLSEAELSLLLDRAQ 177

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
             +  +                   L+VT E   ++   + G  R        + + A+ 
Sbjct: 178 QLVASD-------------------LSVTPEVREQVLAYADGDARRLLNFAEGLFNAAQG 218

Query: 236 AHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDA 295
           A    I        +                    + R   GG    + ISA     R +
Sbjct: 219 AGISEIDETFLQTTMASK-----------------LRRFDKGGEAFYDQISALHKSVRGS 261

Query: 296 IEDLIEPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
             D    + ++       P   GR ++ +A + +GI  P 
Sbjct: 262 NPDAALYWFLRMIDGGADPLYLGRRIVRMAVEDIGIADPR 301


>gi|110834153|ref|YP_693012.1| recombination factor protein RarA [Alcanivorax borkumensis SK2]
 gi|110647264|emb|CAL16740.1| ATPase AAA family related to the helicase subunit of the Holliday
           junction resolvase [Alcanivorax borkumensis SK2]
          Length = 443

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 69/326 (21%), Positives = 116/326 (35%), Gaps = 55/326 (16%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            LRP  L+++ GQ       K   +A       L  ++  GPPG GKTTLA ++A+ +  
Sbjct: 19  RLRPTRLDDYVGQQHLVGEGKPLRQALDRGQ--LHSMILWGPPGTGKTTLALIMAQTVDA 76

Query: 81  NFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
            F + S  V++   D+ A +   +       R VLF+DE+HR +   ++   P +E+  +
Sbjct: 77  AFITLSA-VLSGVKDIRAAVEQAQILLGQGRRTVLFVDEVHRFNKAQQDAFLPHVEEGTI 135

Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
             +    E PS       LSR  +                             EDL  ++
Sbjct: 136 TFIGATTENPSFELNNALLSRARVYRLRALA---------------------PEDLSGLL 174

Query: 193 QRGA---KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            R      L G+ +  +A   +   + G  R    +L    D A+V              
Sbjct: 175 VRALHDPALNGMQLDAQATELLLNYADGDARRLLNMLEVAADLADVDVPNI--------- 225

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
                    G D +       + R   GG +  + ISA     R +  D    +  +   
Sbjct: 226 ---------GADLMREVLRDAVRRFDKGGDLFYDQISAMHKSVRGSDPDAALYWFARMLD 276

Query: 310 IQRTPR--GRLLMPIAWQHLGIDIPH 333
               P    R ++ +A + +G   P 
Sbjct: 277 GGCDPLYIARRVVRMASEDIGNADPR 302


>gi|114562972|ref|YP_750485.1| recombination factor protein RarA [Shewanella frigidimarina NCIMB
           400]
 gi|114334265|gb|ABI71647.1| Recombination protein MgsA [Shewanella frigidimarina NCIMB 400]
          Length = 443

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 79/327 (24%), Positives = 120/327 (36%), Gaps = 47/327 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RPR + E+ GQ       K   +A +A       +L  GPPG GKTTLA+++A 
Sbjct: 14  PLAARMRPRDISEYIGQAHLLGEGKPLRKALEANRA--HSMLLWGPPGTGKTTLAELIAH 71

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAM 129
               +    S  V +   D+ A +   +        R +LF+DE+HR +   ++   P +
Sbjct: 72  YANAHVERISA-VTSGVKDIRAAIEQAKAIAQSRGQRTLLFVDEVHRFNKSQQDAFLPFI 130

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ED  +  +    E PS       LSR        RV L+     D   + +     ++E 
Sbjct: 131 EDGTVIFIGATTENPSFEINNALLSR-------ARVYLINRLSSDEINLIVTQALVDVE- 182

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
                 RG     L +  + A ++A  S G  R A  LL  + D    A A T       
Sbjct: 183 ------RGLGKRQLILPADVAKQLADISDGDARKALNLLELMSDLVADAGAFTTEMLTQV 236

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ- 306
           A       DK G    DL                   ISA     R +  D    +  + 
Sbjct: 237 AGHQAAGYDKNGDQFYDL-------------------ISAVHKSVRGSAPDAALYWYCRI 277

Query: 307 -QGFIQRTPRGRLLMPIAWQHLGIDIP 332
            +G        R L+ IA + +G   P
Sbjct: 278 LEGGGDALYVARRLLAIASEDIGNADP 304


>gi|197334410|ref|YP_002155669.1| ATPase, AAA family [Vibrio fischeri MJ11]
 gi|197315900|gb|ACH65347.1| ATPase, AAA family [Vibrio fischeri MJ11]
          Length = 448

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 71/342 (20%), Positives = 121/342 (35%), Gaps = 42/342 (12%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M    L            + +RP+ +E++ GQ       K    A +A    +  ++  G
Sbjct: 1   MSNFSLDFSAGDDYRPLAARMRPQNIEQYIGQQHLLGVGKPLRRALEAGQ--IHSMILWG 58

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIH 115
           PPG GKTTLA+V A          S  V +   D+ A +   ++      R ++F+DE+H
Sbjct: 59  PPGTGKTTLAEVAANYANAEVERVSA-VTSGVKDIRAAIEKAKENQITGRRTIMFVDEVH 117

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P +ED  +  +    E PS       LSR        RV  L +  ++ 
Sbjct: 118 RFNKSQQDAFLPHIEDGTITFIGATTENPSFELNNALLSR-------ARVYKLKSLEKED 170

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
               I     + +       RG       + D+   ++A    G  R++   L  + D A
Sbjct: 171 IVQVIDQALLDKD-------RGLNDENFVLPDDVKLQLADLVSGDARMSLNYLELLHDMA 223

Query: 234 EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
           E         ++   A +                   +AR    G +  + ISA     R
Sbjct: 224 EENAQGKKVVDLPLLAEVAGEK---------------VARFDNKGDMWYDLISAVHKSIR 268

Query: 294 DAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +  D    +  +       P    R L+ IA + +G   P 
Sbjct: 269 GSNPDAALYWTARIIAAGGDPLYVARRLLAIASEDIGNADPR 310


>gi|149928209|ref|ZP_01916454.1| AAA ATPase, central region [Limnobacter sp. MED105]
 gi|149823100|gb|EDM82340.1| AAA ATPase, central region [Limnobacter sp. MED105]
          Length = 450

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 68/332 (20%), Positives = 116/332 (34%), Gaps = 59/332 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP TL E  GQ       K      + +   +  ++  GPPG+GKTTLA+++A 
Sbjct: 27  PLAERIRPSTLAEVVGQTHLLGAGKPLTLLFEQQH--VHSLILWGPPGVGKTTLARLLAG 84

Query: 77  ELGVNFRSTSGPVIAKAGDLAALL------TNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
                F + S  V++   ++ A +             +LFIDEIHR +   ++ L P +E
Sbjct: 85  AAKAQFIALSA-VLSGVKEIRAAIDQASEYARAGKSTILFIDEIHRFNKSQQDALLPFVE 143

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
              +  +    E PS       LSR  +    +                         D 
Sbjct: 144 SGLVTFIGATTENPSFEVNSALLSRSQVYVLNSLNSN---------------------DF 182

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             +++R     G  +                 +       +  +A+          + + 
Sbjct: 183 THLLKRAQAELGTEI----------------AVDNDAFEALCSYAD--GDARRFLNLVEI 224

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIA-----RNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
            LL+      G ++LDL  L  IA     R   GG    + ISA     R +  D    +
Sbjct: 225 TLLQTKA--QGLNKLDLPALKQIAPSQIRRFDKGGDAFYDQISALHKSVRGSDPDAALYW 282

Query: 304 MIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
             +       PR   R ++ +AW+ +G+  P 
Sbjct: 283 FCRMLDGGADPRYMARRIVRMAWEDIGLADPR 314


>gi|325475344|gb|EGC78529.1| AAA family ATPase [Treponema denticola F0402]
          Length = 441

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 70/341 (20%), Positives = 125/341 (36%), Gaps = 39/341 (11%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           D     + +  Q +   S +RP +L+E+ GQ        +   A +A  + L  ++F GP
Sbjct: 4   DLFKAAASSSKQNEPLASRMRPISLDEYIGQEHIIGKGCLLRRAIQA--DRLSSLIFFGP 61

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIH 115
           PG GKTTLA+V+A     NF S +  V+A    +   ++N E+       + +LF+DE+H
Sbjct: 62  PGTGKTTLARVIANTTKSNFLSLNA-VLAGVQQIREAVSNAEENKKLYNRKTILFVDEVH 120

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++ L P +E+  + L+    E P     K  +SR  +            PL D 
Sbjct: 121 RWNKSQQDALLPWVENGTIILIGATTENPYFEVNKALVSRSRVFEL--------KPLTDN 172

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
               +       +      +RG     +     A   +   + G  R     L    + +
Sbjct: 173 DLKKVAQFALTNK------ERGYGNWKIEFEAGALEHLIDTASGDARSLLNALELAVETS 226

Query: 234 EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
                     +I  +        +      D             G    + ISA +   R
Sbjct: 227 AEHWPPEENFKITISLKAAEESIQKKVVLYDR-----------DGDYHYDVISAFIKSIR 275

Query: 294 DAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
            +  D    ++ +       PR   R ++  A + +G+  P
Sbjct: 276 GSDPDAAVYWLARMIAAGEDPRFIFRRMLISACEDIGLASP 316


>gi|94969641|ref|YP_591689.1| recombination factor protein RarA [Candidatus Koribacter versatilis
           Ellin345]
 gi|94551691|gb|ABF41615.1| Recombination protein MgsA [Candidatus Koribacter versatilis
           Ellin345]
          Length = 447

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 76/345 (22%), Positives = 130/345 (37%), Gaps = 49/345 (14%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M          S  D  ++  +RPRTL+EF GQ    +  K      +   + +  ++F 
Sbjct: 1   MSLFDTSRPEQSDRDRPLADRMRPRTLDEFAGQEHILAPGKPLR--VQIDRDDIGSLIFW 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEI 114
           GPPG+GKTTLA+++A  +          V++   ++  ++ + E       R +LF+DEI
Sbjct: 59  GPPGVGKTTLAKIIA-AMTHADFIEFSAVLSGIKEIKQVMADAERVRQYGTRTILFVDEI 117

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++   P +E   + L+    E PS       LSR  +   T        PL +
Sbjct: 118 HRFNRAQQDAFLPHVERGNIKLIGATTENPSFEVNSALLSRSRVYTLT--------PLTE 169

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
              + +              +RG     +   D A   IA  + G  R    +L      
Sbjct: 170 EQIVGLLRRALT------DTERGLAELHVTAEDIALARIAAYASGDARSGYNVLEVAAQA 223

Query: 233 AEVAHAKTITREIADAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
           A     + IT +I   AL R     DK G +  +L                   ISA   
Sbjct: 224 AGATSERIITEQIVADALQRRVLRYDKSGEEHYNL-------------------ISALHK 264

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
             R++  D    ++ +            R ++ +A + +G+  P+
Sbjct: 265 SVRNSDPDAALYWLARMIESGEDALYIARRVVRMAVEDIGLADPN 309


>gi|89092932|ref|ZP_01165884.1| ATPase, AAA family protein [Oceanospirillum sp. MED92]
 gi|89082957|gb|EAR62177.1| ATPase, AAA family protein [Oceanospirillum sp. MED92]
          Length = 452

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 73/342 (21%), Positives = 128/342 (37%), Gaps = 53/342 (15%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           L       +   + +RP++L E+ GQ       K    A +  +     ++F GPPG+GK
Sbjct: 3   LFSQAPAYEPLAAKMRPQSLAEYCGQAHLLGRDKPLRTALEQGSA--HSMIFWGPPGVGK 60

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSII 120
           TTLA+++A  +  +F + S  V++   D+   +   +        + +LF+DE+HR +  
Sbjct: 61  TTLAKLIAHHVDAHFLTLSA-VLSGVKDIRVAVEQAKQHSAQTGRKTILFVDEVHRFNKS 119

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSR-----FTLIAATTRVGLLTNPLQDR 173
            ++   P +ED  +  +    E PS       LSR        + AT  + +L   L D+
Sbjct: 120 QQDAFLPYIEDGTIIFVGATTENPSFELNNALLSRARVYLLRSLEATDILNVLNRALDDQ 179

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                              +RG     L ++DE    +A  + G  R +  LL    D A
Sbjct: 180 -------------------ERGYGQRKLNISDEMLNRLAQAADGDARRSLNLLEIAADLA 220

Query: 234 EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
                 +         L+  ++ +        RY          G +  + ISA     R
Sbjct: 221 VKQDDGSE--------LINESVLEEVLSSTGRRY-------DKQGDLFYDMISAFHKSVR 265

Query: 294 DAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +  D    +  +       P    R L+ IA + +G   P 
Sbjct: 266 GSSPDGALYWYCRMLDGGCDPLYVARRLVAIASEDIGNADPR 307


>gi|320106653|ref|YP_004182243.1| AAA ATPase central domain-containing protein [Terriglobus saanensis
           SP1PR4]
 gi|319925174|gb|ADV82249.1| AAA ATPase central domain protein [Terriglobus saanensis SP1PR4]
          Length = 445

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 76/334 (22%), Positives = 123/334 (36%), Gaps = 48/334 (14%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           ++++      +RPRTL+EF GQ              +   +    ++F GPPG GKTTLA
Sbjct: 17  IARDAPLPERMRPRTLDEFAGQTHLVGKDGPLR--LQLERDDPASMIFWGPPGTGKTTLA 74

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALL------TNLEDRDVLFIDEIHRLSIIVEEIL 125
           ++VAR    +F   S  V++   ++  ++        +  R +LFIDEIHR +   ++  
Sbjct: 75  KIVARMTQASFIEFSA-VMSGIKEIKQVMVDAEKAAAMGSRTILFIDEIHRFNKAQQDAF 133

Query: 126 YPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
            P +E   L L+    E PS       LSR  +             L +   I +     
Sbjct: 134 LPYVERGTLRLIGATTENPSFEINAALLSRCRVYTLR--------GLSESEVIVLMQRAL 185

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
             E      +RG     L   + +   IA  + G  R A   L      A       +T+
Sbjct: 186 ADE------ERGLGAMHLGTAEGSLEMIASYASGDARYALNALEMATRIASARGDGALTK 239

Query: 244 EIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           E    AL +     DK G    DL                   ISA     R++  D   
Sbjct: 240 ETVGEALQQRVLLYDKRGEQHYDL-------------------ISALHKSVRNSDADAAL 280

Query: 302 PYMIQQGFIQRT--PRGRLLMPIAWQHLGIDIPH 333
            ++ +            R ++ +A + +G+  P 
Sbjct: 281 YWLTRMLEAGEDAMYVARRVVRMAVEDIGLAAPE 314


>gi|329910976|ref|ZP_08275423.1| AAA ATPase, central region [Oxalobacteraceae bacterium IMCC9480]
 gi|327546035|gb|EGF31112.1| AAA ATPase, central region [Oxalobacteraceae bacterium IMCC9480]
          Length = 431

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 67/330 (20%), Positives = 115/330 (34%), Gaps = 54/330 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP TL++  GQ       K    A ++       ++  GPPG+GKTTLA+++A 
Sbjct: 5   PLAERLRPTTLDQVIGQQHLLGPGKPLRVAFESGE--PHSMILWGPPGVGKTTLARLMAD 62

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAM 129
               +F + S  V++   D+   +   +        R +LF+DE+HR +   ++   P +
Sbjct: 63  SFAADFIALSA-VLSGVKDIREAVERAQLSRGAMGRRTILFVDEVHRFNKSQQDAFLPHV 121

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E      +    E PS       LSR  +    +                        +D
Sbjct: 122 ESGLFTFIGATTENPSFEVNGALLSRAAVYVLKS---------------------LTEDD 160

Query: 188 LKTIVQRGAKLT--GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           L  ++ R  +    GL   D+A   +   + G  R     L  V   A       +   +
Sbjct: 161 LGQLLDRACRDLLDGLQFADDAKTTLVASADGDGRKLLNNLEIVARAAAAKSVVLVDAAL 220

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
               L                    + R   GG    + ISA     R +  D    +++
Sbjct: 221 LSECLG-----------------DALRRFDKGGDTFYDQISALHKSVRGSNPDAALYWLV 263

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +       PR   R L+ +A + +G+  P 
Sbjct: 264 RMLDGGADPRYLARRLIRMASEDIGLADPR 293


>gi|59711514|ref|YP_204290.1| recombination factor protein RarA [Vibrio fischeri ES114]
 gi|59479615|gb|AAW85402.1| recombination protein [Vibrio fischeri ES114]
          Length = 448

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 71/342 (20%), Positives = 121/342 (35%), Gaps = 42/342 (12%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M    L            + +RP+ +E++ GQ       K    A +A    +  ++  G
Sbjct: 1   MSNFSLDFSAGDDYRPLAARMRPQNIEQYIGQQHLLGVGKPLRRALEAGQ--IHSMILWG 58

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIH 115
           PPG GKTTLA+V A          S  V +   D+ A +   ++      R ++F+DE+H
Sbjct: 59  PPGTGKTTLAEVAANYANAEVERVSA-VTSGVKDIRAAIEKAKENQITGRRTIMFVDEVH 117

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P +ED  +  +    E PS       LSR        RV  L +  ++ 
Sbjct: 118 RFNKSQQDAFLPHIEDGTITFIGATTENPSFELNNALLSR-------ARVYKLKSLEKED 170

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
               I     + +       RG       + D+   ++A    G  R++   L  + D A
Sbjct: 171 IVQVIDQALLDKD-------RGLNDENFVLPDDVKLQLADLVSGDARMSLNYLELLHDMA 223

Query: 234 EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
           E         ++   A +                   +AR    G +  + ISA     R
Sbjct: 224 EENAQGKKVVDLPLLAEVAGEK---------------VARFDNKGDMWYDLISAVHKSIR 268

Query: 294 DAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +  D    +  +       P    R L+ IA + +G   P 
Sbjct: 269 GSNPDAALYWTARIIAAGGDPLYVARRLLAIASEDIGNADPR 310


>gi|331001822|ref|ZP_08325344.1| hypothetical protein HMPREF0491_00206 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412796|gb|EGG92179.1| hypothetical protein HMPREF0491_00206 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 441

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 76/344 (22%), Positives = 136/344 (39%), Gaps = 44/344 (12%)

Query: 2   MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD    +     +EDA + S LRP +L+   GQ       K    A KA  + L  ++F 
Sbjct: 1   MDLFDYMKEVNEKEDAPLASRLRPDSLDSIVGQEHILGKDKFLYRAIKA--DKLSSIIFF 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDE 113
           GPPG GKTT+A+V+A     NF+  +   +A   ++   ++  +        + +LFIDE
Sbjct: 59  GPPGCGKTTIAKVIANTTKSNFKQINA-TMAGKKEMEEAVSEAKISFSMYKKKTILFIDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++ L P +ED  + L+    E P     K  +SR  ++   +          
Sbjct: 118 IHRFNKSQQDYLLPFVEDGTIILIGATTENPFFEVNKALISRSRVLELKSLSDKDIE--- 174

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
                      Y +E   +  +RG       ++ EA   +A    G  R A   L     
Sbjct: 175 -----------YILEKAISDRERGMGRYETDISKEAIEFLAKSVSGDARNALNALELAIL 223

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
             +++    I  +I   +           + +  + L    +    G    +TISA +  
Sbjct: 224 TTDISEDGKIHIDINIIS-----------ECVQRKIL----KYDKDGNSHYDTISAFIKS 268

Query: 292 PRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            R +  D +  Y+ +  +     +   R ++  A + +G+  P+
Sbjct: 269 MRGSDPDAVMYYLAKMLYAGEDIKFIARRILICAAEDVGLADPN 312


>gi|189425566|ref|YP_001952743.1| recombination factor protein RarA [Geobacter lovleyi SZ]
 gi|189421825|gb|ACD96223.1| AAA ATPase central domain protein [Geobacter lovleyi SZ]
          Length = 435

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 78/345 (22%), Positives = 134/345 (38%), Gaps = 53/345 (15%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M  +  L  ++++        +RPR+L EF GQ       K   +  +A  + L  ++F 
Sbjct: 1   MNRQSALFDQSLTP--PLAERMRPRSLGEFCGQEHLLGPGKALRKMIEA--DQLPSMIFW 56

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEI 114
           GPPG GKTTLA ++A E    F   S  ++A   ++  +  + E       R +LF+DEI
Sbjct: 57  GPPGCGKTTLAHIIAHETSSRFVFFSA-IMAGVKEIREIFKDAEAYAAGGTRTILFVDEI 115

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++   PA+E   + ++    E PS   +   LSR  ++            L  
Sbjct: 116 HRFNKAQQDAFLPAVEKGLVTIIGATTENPSFEVIAPLLSRCRVLRLKQLEADELATL-- 173

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
                       ++      ++G     LA+ DEA   ++  ++G  R A   L      
Sbjct: 174 ------------LQKTLQDTEKGLGGLQLAIEDEALTFLSEAAQGDGRKALNTLEVAAGL 221

Query: 233 AEVAHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
           A+      I+ EIA  A+ + A   DK G +                       ISA + 
Sbjct: 222 AQ---DGLISLEIAQEAMQQKALLYDKGGEEHY-------------------NVISAFIK 259

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPRG--RLLMPIAWQHLGIDIPH 333
             R +  D    ++ +       P    R ++ +A + +G   P 
Sbjct: 260 SMRGSDPDAALYWLARMLEAGEDPLFILRRMIILASEDIGNADPR 304


>gi|269102237|ref|ZP_06154934.1| putative ATPase protein [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268162135|gb|EEZ40631.1| putative ATPase protein [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 447

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 78/337 (23%), Positives = 122/337 (36%), Gaps = 43/337 (12%)

Query: 8   LSRNVSQE-DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
            S + S +     + +RPRT++E+ GQ       K    A +A    L  ++  GPPG G
Sbjct: 4   FSLDFSSDFRPLAARMRPRTVQEYIGQKHILGEGKPLRRALEAGH--LHSMILWGPPGTG 61

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALL------TNLEDRDVLFIDEIHRLSII 120
           KTTLA+V A          S  V +   D+ A +           R +LF+DE+HR +  
Sbjct: 62  KTTLAEVAANYANAEVERVSA-VTSGVKDIRAAIDKARDNKMAGRRTILFVDEVHRFNKS 120

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++   P +ED  +  +    E PS       LSR        RV  L +  ++     +
Sbjct: 121 QQDAFLPHIEDGTVTFIGATTENPSFELNNALLSR-------ARVYKLKSLEKEEILEVL 173

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
                + E       RG   T L   D+    +A    G  R++   L ++ D AE    
Sbjct: 174 DQALNDKE-------RGVSDTNLNFVDDVKERLADLVCGDARMSLNYLEQLIDMAEEDSK 226

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
                 +   A +                   IAR    G +  + ISA     R +  D
Sbjct: 227 GIKQITLPLLAEVAGEK---------------IARFDNKGDMWYDMISAVHKSIRGSNPD 271

Query: 299 LIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
               +  +       P    R L+ IA + +G   P 
Sbjct: 272 GALYWFARMLQAGCDPLYVARRLLAIASEDIGNADPR 308


>gi|166031126|ref|ZP_02233955.1| hypothetical protein DORFOR_00811 [Dorea formicigenerans ATCC
           27755]
 gi|166028973|gb|EDR47730.1| hypothetical protein DORFOR_00811 [Dorea formicigenerans ATCC
           27755]
          Length = 439

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 82/343 (23%), Positives = 130/343 (37%), Gaps = 44/343 (12%)

Query: 2   MDREGLL-SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD       +N+ QE    S LRP TLEE  GQ       K+   A KA  + L  ++F 
Sbjct: 1   MDLFEYARQKNMDQEAPLASRLRPTTLEEVVGQQHIIGKDKLLYRAIKA--DKLSSIIFY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDE 113
           GPPG GKTTLA+V+A      F   +  V A   D+  ++   ++       + +LF+DE
Sbjct: 59  GPPGTGKTTLAKVIAHTTSAEFTQINATV-AGKKDMEEVVQKAKETLGMYQKKTILFVDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++ L P +ED  + L+    E P        +SR ++               
Sbjct: 118 IHRFNKGQQDYLLPFVEDGTIILIGATTENPYFEVNGALISRSSIFEL------------ 165

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
                    +  E ED+KT+++R        +    A            IAG   R   +
Sbjct: 166 ---------HPLEKEDIKTLLKRAVYDQEKGMGSYHAEIDEEALEFLADIAGGDARNALN 216

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
             E+     +T E +           +  D         + R    G    +TISA +  
Sbjct: 217 AIEL---GILTTERS-----ADGKIHITLDVASECIQKRVVRYDKTGDNHYDTISAFIKS 268

Query: 292 PRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
            R +  D    Y+ +  +     +   R +M  A + +G   P
Sbjct: 269 MRGSDPDAAVYYLAKMLYAGEDVKFIARRIMICASEDVGNADP 311


>gi|295109221|emb|CBL23174.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [Ruminococcus obeum A2-162]
          Length = 439

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 85/347 (24%), Positives = 129/347 (37%), Gaps = 52/347 (14%)

Query: 2   MDREGLL-SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD      S+ + +E    S LRP TLEE  GQ       K+   A KA  + L  V+F 
Sbjct: 1   MDLFEYAKSKTLDRESPLASRLRPTTLEEVVGQEHIVGKDKLLYRAIKA--DKLTSVIFY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDE 113
           GPPG GKTTLA+V+A     NF   +  V A   D+  ++   +        + +LFIDE
Sbjct: 59  GPPGTGKTTLAKVIAHTTSANFTQINATV-AGKKDMEQVVQEAQNNLGMYGRKTILFIDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++ L P +ED  + L+    E P        LSR  +             L 
Sbjct: 118 IHRFNKGQQDYLLPFVEDGTIILIGATTENPYFEVNGALLSRSIIFELKALSTENIRTLL 177

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R                    RG    G  + ++A   +A  + G  R A   +     
Sbjct: 178 LR--------------AVNDCDRGMGNYGAVIDNDALDFLADMAGGDARSALNAVELGIL 223

Query: 232 FAEVAHAKTI--TREIADAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISA 287
               +    I  T E+A   + +     DK G +  D+                   ISA
Sbjct: 224 TTPKSTDGHIHLTLEVASECIQKRVVQYDKKGDNHYDI-------------------ISA 264

Query: 288 GLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
            +   R +  D    Y+ +  +     +   R +M +A + +G   P
Sbjct: 265 FIKSMRGSDPDAAVYYLAKMLYAGEDIKFVARRIMILASEDIGNADP 311


>gi|225568599|ref|ZP_03777624.1| hypothetical protein CLOHYLEM_04676 [Clostridium hylemonae DSM
           15053]
 gi|225162527|gb|EEG75146.1| hypothetical protein CLOHYLEM_04676 [Clostridium hylemonae DSM
           15053]
          Length = 438

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 80/343 (23%), Positives = 128/343 (37%), Gaps = 44/343 (12%)

Query: 2   MDREGLL-SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD       +N+  E    S LRP TL+E  GQ       K+   A KA  + L  ++F 
Sbjct: 1   MDLFDYAREKNMDNEAPLASRLRPATLDEVVGQQHIIGKDKLLYRAIKA--DKLSSIIFY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDE 113
           GPPG GKTTLA+V+A      F   +  V A   D+  ++ + ++       R +LF+DE
Sbjct: 59  GPPGTGKTTLAKVIANTTSAEFTQINATV-AGKKDMEEVVKHAKELQGMYQKRTILFVDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++ L P +ED  L L+    E P        +SR ++               
Sbjct: 118 IHRFNKGQQDYLLPFVEDGTLILIGATTENPYFEVNGALISRSSIFEL------------ 165

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
                    +  + ED++T+++R        +    A            IAG   R   +
Sbjct: 166 ---------HPLDKEDIRTLIRRALTDVEKGMGSYQAVIEEDALEFLADIAGGDARNALN 216

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
             E+    T   E             +  D         + R    G    +TISA +  
Sbjct: 217 AVELGVLTTERSEDGK--------IHITLDVASECIQKRVVRYDKSGDNHYDTISAFIKS 268

Query: 292 PRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
            R +  D    Y+ +  +     +   R +M  A + +G   P
Sbjct: 269 MRGSDPDAAVYYLAKMLYAGEDIKFIARRIMICASEDVGNADP 311


>gi|29541759|gb|AAO90698.1| ATPase, AAA family [Coxiella burnetii RSA 493]
          Length = 427

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 73/320 (22%), Positives = 118/320 (36%), Gaps = 41/320 (12%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  LEEF GQ       K    A +     L  ++  GPPG GKTTLA+++A++ G  
Sbjct: 1   MRPGCLEEFVGQSHLLGKDKPLFRAIEK--GKLHSMILWGPPGSGKTTLAEIIAQKAGAR 58

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR----DVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
             S S  V+A   D+  ++   E       +LF+DE+H  +   ++   P +E   + L+
Sbjct: 59  VESISA-VLAGVKDIRDVVERAERHKGQATILFVDEVHGFNKSQQDAFLPHVEKGTITLI 117

Query: 138 --VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
               E PS +     LSR       TRV +L    +      +       E+     +RG
Sbjct: 118 GATTENPSFQLNNALLSR-------TRVYVLKQLTEADLLSIL-------ENALANEERG 163

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255
                L + +     I   + G  R    LL  + DF                AL     
Sbjct: 164 LGKKALEIPEPLRRRIVQFADGDARQCLNLLEIIADF----------------ALEENGR 207

Query: 256 DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP- 314
             +    +D      + R    G    + ISA     R +  D    ++ +       P 
Sbjct: 208 FVVDDGLIDKVLTEGLRRFDKRGEAFYDQISALHKSVRGSDPDASLYWLSRLLDGGCDPF 267

Query: 315 -RGRLLMPIAWQHLGIDIPH 333
              R ++ +A + +G   P 
Sbjct: 268 YVARRVVRMASEDIGNADPR 287


>gi|209520410|ref|ZP_03269172.1| AAA ATPase central domain protein [Burkholderia sp. H160]
 gi|209499147|gb|EDZ99240.1| AAA ATPase central domain protein [Burkholderia sp. H160]
          Length = 437

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 67/337 (19%), Positives = 118/337 (35%), Gaps = 52/337 (15%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           +             LRPR ++E  GQ       K    A ++       ++  GPPG+GK
Sbjct: 1   MFEETRANVPLAERLRPRNIDEVIGQTHLLGPNKPLRVAFESGKA--HSMILWGPPGVGK 58

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIV 121
           TTLA+++A      F + S  V++   D+   +   +       + ++F+DE+HR +   
Sbjct: 59  TTLARLMADAFHAEFIALSA-VLSGVKDIREAVETAQIHRANGHQTLVFVDEVHRFNKSQ 117

Query: 122 EEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           ++   P +E      +    E PS       LSR  +    +                  
Sbjct: 118 QDAFLPHVESGLFVFVGATTENPSFEVNSALLSRAAVYVLKS------------------ 159

Query: 180 LNFYEIEDLKTIVQRGAKLT-GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
                 ++ + +++R  +   GL  TDEA   +   + G  R     L  V   A     
Sbjct: 160 ---LTDDEQRELLERAQEELGGLTFTDEARAALIGSADGDGRKLLNNLEIVARAAARQTT 216

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             I   +  +AL                    + R   GG    + ISA     R +  D
Sbjct: 217 TEIDGTLLGSALAEN-----------------LRRFDKGGDAFYDQISALHKSVRGSNPD 259

Query: 299 LIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
               +  +       PR   R ++ +AW+ +G+  P 
Sbjct: 260 GALYWFCRMLDGGADPRYLARRIVRMAWEDIGLADPR 296


>gi|269216870|ref|ZP_06160724.1| replication-associated recombination protein A [Slackia exigua ATCC
           700122]
 gi|269129677|gb|EEZ60761.1| replication-associated recombination protein A [Slackia exigua ATCC
           700122]
          Length = 448

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 74/344 (21%), Positives = 130/344 (37%), Gaps = 50/344 (14%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           +++++ L    V       + LRPR+L+E  GQ       KV     +  ++ +  ++F 
Sbjct: 5   LVEQDSLFDAQVDAARPLAARLRPRSLDEVVGQQHLIGPGKVLRRIIE--SDQVSSMIFW 62

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFIDEI 114
           GPPG+GKTTLA+V+A +    F + S  V +   ++  ++        L  R ++F+DEI
Sbjct: 63  GPPGVGKTTLARVIADQTEARFINFSA-VTSGIKEIRTIMQEADAQRGLGRRTIVFVDEI 121

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++   P +E   + L+    E PS       LSR  +         +   L +
Sbjct: 122 HRFNKAQQDAFLPFVEKGAITLIGATTENPSFEVNGALLSRCKV--------FVLKALTE 173

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR-- 230
              + +       E       RG     + + D+    IA+ S G  R A   L      
Sbjct: 174 NDVVELLKRALSDE-------RGFGDADVRIEDDLLHAIALFSNGDARSALSTLEMATLN 226

Query: 231 -DFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGL 289
            D  +   A T        +  RL  DK G +  ++                   ISA  
Sbjct: 227 GDEQDGIIAVTSDTVAQCTSNRRLLYDKDGDEHYNI-------------------ISALH 267

Query: 290 SEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
              R++  D    ++ +       P    R +   A + +G+  
Sbjct: 268 KSMRNSDPDAAVYWLARMLESGEDPLYIARRITRFAAEDIGLAD 311


>gi|156974088|ref|YP_001444995.1| recombination factor protein RarA [Vibrio harveyi ATCC BAA-1116]
 gi|156525682|gb|ABU70768.1| hypothetical protein VIBHAR_01799 [Vibrio harveyi ATCC BAA-1116]
          Length = 451

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 76/327 (23%), Positives = 121/327 (37%), Gaps = 42/327 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP T+E++ GQ       K    A +A    +  ++  GPPG GKTTLA+V A 
Sbjct: 18  PLAARMRPETIEQYIGQQHILGPGKPLRRALEAGH--IHSMILWGPPGTGKTTLAEVAAN 75

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAME 130
                    S  V +   ++ A +           R +LF+DE+HR +   ++   P +E
Sbjct: 76  YANAEVERVSA-VTSGVKEIRAAIEKARENKMAGRRTILFVDEVHRFNKSQQDAFLPHIE 134

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           D  +  +    E PS       LSR        RV  LT+  +D   + +     + E  
Sbjct: 135 DGTVTFIGATTENPSFELNNALLSR-------ARVYKLTSLDKDEISLALNQAISDKE-- 185

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
                RG   T     D     +A    G  R++   L  + D AE        +EI   
Sbjct: 186 -----RGLGNTPAHFVDNVLDRLAELVNGDARMSLNYLELLYDMAEDNAKGE--KEITLK 238

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  +A +K             ++R    G +  + ISA     R +  D    +  +  
Sbjct: 239 LLAEVAGEK-------------VSRFDNKGDIWYDLISAVHKSIRGSNPDAALYWAARMI 285

Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIPH 333
                P    R L+ IA + +G   P 
Sbjct: 286 AAGCDPLYIARRLLAIASEDVGNADPR 312


>gi|325927614|ref|ZP_08188843.1| Recombination protein MgsA [Xanthomonas perforans 91-118]
 gi|325541981|gb|EGD13494.1| Recombination protein MgsA [Xanthomonas perforans 91-118]
          Length = 457

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 71/327 (21%), Positives = 120/327 (36%), Gaps = 45/327 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RPRTL+E  GQ    +       A +  +  +  ++  GPPG GKTTLA ++A 
Sbjct: 24  PLAERMRPRTLDEMVGQKRLLAPDSALRRAVE--SGRVHSMILWGPPGCGKTTLALLLAH 81

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAME 130
                F++ S  V++   ++  +L           R VLF+DE+HR +   ++   P +E
Sbjct: 82  YADAEFKAISA-VLSGLPEVRQVLAGAAQRFAGGRRTVLFVDEVHRFNKAQQDAFLPHIE 140

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
              +  +    E PS       LSR  +                  G+  +     ++  
Sbjct: 141 RGTILFVGATTENPSFELNSALLSRCRVHVLE--------------GVSPQDIVEALQRA 186

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
               +RG     + V++ +  EIA  + G  R A  LL    + A          EI   
Sbjct: 187 LRDAERGLGAETIQVSEASLLEIASAADGDVRRALTLLEIAAELAAGEGG-----EITPQ 241

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            LL++  D+               R    G    + ISA     R +  D    ++ +  
Sbjct: 242 TLLQVLADRT-------------RRFDKNGEQFYDQISALHKSVRSSNPDAALYWLTRML 288

Query: 309 FIQRTP--RGRLLMPIAWQHLGIDIPH 333
                P    R L  +A + +G+  P 
Sbjct: 289 DGGCDPAYLARRLTRMAIEDIGLADPR 315


>gi|124024855|ref|YP_001013971.1| fused recombination factor protein RarA/unknown domain-containing
           protein [Prochlorococcus marinus str. NATL1A]
 gi|123959923|gb|ABM74706.1| Hypothetical protein NATL1_01421 [Prochlorococcus marinus str.
           NATL1A]
          Length = 734

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 76/340 (22%), Positives = 132/340 (38%), Gaps = 47/340 (13%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           E L+  N    D     LRP+TL+EF GQ    +  ++   +  A  + + ++L  GPPG
Sbjct: 11  EQLIQNNAPLAD----RLRPQTLDEFVGQDHILAQGRLLRRSIVA--DKVGNLLLYGPPG 64

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRL 117
           +GKTTLA+++A    ++  S     +A   DL + + +          R +LFIDE+HR 
Sbjct: 65  VGKTTLARIIALNT-LSHFSVVNAALAGIKDLRSEIESAIDRLNKFGKRTILFIDEVHRF 123

Query: 118 SIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
           +   ++ L P +E+  L L+    E P     K  LSR  L    +      + L  R  
Sbjct: 124 NTAQQDALLPWVENGTLTLIGATTENPYFEVNKALLSRSRLFRLNSLNSKALHQLLQR-- 181

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
                            +RG  L  + +  EA   +     G  R+    L    +    
Sbjct: 182 ------------ALNDKKRGYGLKLINLASEAEDHLVDVCNGDARVLLNALELAVESTIA 229

Query: 236 AHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDA 295
               +I  ++  A        +    +  + Y          G    +TISA +   R +
Sbjct: 230 NQDTSINIDLKIA--------EDSIQERAVLY-------DKKGDAHFDTISAFIKSLRGS 274

Query: 296 IEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
             D    ++ +      +PR   R ++  A + +G+  P+
Sbjct: 275 DPDAALFWLARMLEAGESPRFIFRRMLIAAGEDIGLADPN 314


>gi|310828857|ref|YP_003961214.1| hypothetical protein ELI_3289 [Eubacterium limosum KIST612]
 gi|308740591|gb|ADO38251.1| hypothetical protein ELI_3289 [Eubacterium limosum KIST612]
          Length = 446

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 82/339 (24%), Positives = 129/339 (38%), Gaps = 52/339 (15%)

Query: 10  RNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
            N  +++A +S  +RP TL+EF GQ       K+     +A  + L  V+F GPPG GKT
Sbjct: 11  ENQIEDNAPLSVRMRPTTLDEFVGQTHIIGKGKLLYRLIEA--DKLSSVVFYGPPGTGKT 68

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIV 121
           TLA+++A      F   +  V +   ++  +L   +D       + +LFIDEIHR +   
Sbjct: 69  TLAKIIAHRTQAAFYELNA-VTSGKKEITEILDKAKDNLGIYNRKSILFIDEIHRFNKAQ 127

Query: 122 EEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           ++ L P++E   + L+    E P        LSR T+    T        L  R      
Sbjct: 128 QDALLPSVEGGLVILIGATTENPYFEINSPLLSRSTIFEFKTLTDDEIKGLLRR------ 181

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
                     T  ++G     + V +EA   +   S G  R A   L       E     
Sbjct: 182 --------AVTDKKKGYGSMKVKVDEEALDHLTAVSNGDVRRALNALELGILTKEKDDQG 233

Query: 240 --TITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDA 295
              I  E A   + + A   DK G +  D                   TISA +   R +
Sbjct: 234 YIHIDLETAQECIQKKAVQYDKKGDNHYD-------------------TISAFIKSIRGS 274

Query: 296 IEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
             D    ++ +       P+   R ++  A + +G   P
Sbjct: 275 DPDAALYWLAKMLEAGEDPKFIARRIVISASEDIGNAEP 313


>gi|51893539|ref|YP_076230.1| recombination factor protein RarA [Symbiobacterium thermophilum IAM
           14863]
 gi|51857228|dbj|BAD41386.1| ATP/GTP-binding domain protein [Symbiobacterium thermophilum IAM
           14863]
          Length = 438

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 75/328 (22%), Positives = 120/328 (36%), Gaps = 51/328 (15%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            +RP+TL+EF GQ       +    A +A    L   +  GPPG GKTTLA+++A  +  
Sbjct: 21  RMRPQTLDEFVGQEHLVGPGRFLRRALEAGH--LPSCILFGPPGTGKTTLARLMASNVNA 78

Query: 81  NFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +F   +  V +   D+  ++            + V+FIDEIHR     ++ L P +ED  
Sbjct: 79  HFEQLNA-VTSGVQDIRRIVDEARARLAERGQKTVVFIDEIHRWRKDQQDALLPHVEDGL 137

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + L+    + P        +SR  +             L DR                  
Sbjct: 138 ITLVGATTQNPLVSVNAPLVSRTRIFELKPLSDEHIAHLLDR--------------ALRT 183

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE--VAHAKTITREIADAA 249
             RG       VT EA   +   + G  R A   L       +      +T+T E A+ A
Sbjct: 184 PGRGLGNYNATVTPEAMEHLVRMAGGDARAALNALELAVLLTQPDEQGRRTVTLETAEEA 243

Query: 250 LLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           LL+ A   D  G +   +                    SA +   R +  D    ++ + 
Sbjct: 244 LLKRAVVYDHDGDEHYHVA-------------------SALIKSIRGSDPDAALYWLARM 284

Query: 308 GFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +    PR   R L+  A + +G+  P 
Sbjct: 285 LYAGEDPRFIARRLVISAAEDIGLADPQ 312


>gi|91226056|ref|ZP_01260983.1| hypothetical protein V12G01_20316 [Vibrio alginolyticus 12G01]
 gi|91189497|gb|EAS75774.1| hypothetical protein V12G01_20316 [Vibrio alginolyticus 12G01]
          Length = 449

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 76/327 (23%), Positives = 121/327 (37%), Gaps = 42/327 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP T+E++ GQ       K    A +A    +  ++  GPPG GKTTLA+V A 
Sbjct: 16  PLAARMRPETIEQYIGQQHILGPGKPLRRALEAGH--IHSMILWGPPGTGKTTLAEVAAN 73

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAME 130
                    S  V +   ++ A +           R +LF+DE+HR +   ++   P +E
Sbjct: 74  YANAEVERVSA-VTSGVKEIRAAIEKARENKMAGRRTILFVDEVHRFNKSQQDAFLPHIE 132

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           D  +  +    E PS       LSR        RV  LT+  +D   + +     + E  
Sbjct: 133 DGTVTFIGATTENPSFELNNALLSR-------ARVYKLTSLDKDEISLALNQAISDKE-- 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
                RG   T     D     +A    G  R++   L  + D AE        +EI   
Sbjct: 184 -----RGLGNTPAHFADNVLDRLAELVNGDARMSLNYLELLYDMAEDNAQGE--KEITLK 236

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  +A +K             ++R    G +  + ISA     R +  D    +  +  
Sbjct: 237 LLAEVAGEK-------------VSRFDNKGDIWYDLISAVHKSIRGSNPDAALYWAARMI 283

Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIPH 333
                P    R L+ IA + +G   P 
Sbjct: 284 AAGCDPLYIARRLLAIASEDVGNADPR 310


>gi|124266314|ref|YP_001020318.1| recombination factor protein RarA [Methylibium petroleiphilum PM1]
 gi|124259089|gb|ABM94083.1| Recombination protein MgsA [Methylibium petroleiphilum PM1]
          Length = 443

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 78/337 (23%), Positives = 130/337 (38%), Gaps = 54/337 (16%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           +    S +      LRP TL+E  GQ +     K   +AA A       ++  GPPG GK
Sbjct: 11  IDAVASDDAPLAERLRPATLDEVIGQRQLLGEGKPL-QAAFASGRP-HSMILWGPPGTGK 68

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIV 121
           TTLA+++A      F + S  V+    D+   +   +       R ++F+DE+HR +   
Sbjct: 69  TTLARLMAHAFDAQFIAISA-VLGGVKDIRDAVEQAQVAQGMGRRTIVFVDEVHRFNKAQ 127

Query: 122 EEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           ++   P +E      +    E PS       LSR T+         +  PL D       
Sbjct: 128 QDAFLPHVESGLFTFIGATTENPSFEVNSALLSRATV--------HVLRPLDDS------ 173

Query: 180 LNFYEIEDLKTIVQRGAKLTG-LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
                  +L  +++RG  L     ++D A   +   + G  R   RLL    + A +A A
Sbjct: 174 -------ELAELLERGRALLNGSPLSDAARTRLIAYADGDAR---RLLNTYENIARMAGA 223

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
                EI +A L +   ++             + R   GG    ++ISA     R +  D
Sbjct: 224 ---VLEIDEAFLEQALGEQ-------------LRRYDKGGDQFYDSISALHKSVRGSDPD 267

Query: 299 LIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
               + ++        R   R L+ +A + +G+  P 
Sbjct: 268 ASLYWFVRMIDGGVDARYVARRLVRMASEDVGLADPR 304


>gi|253998904|ref|YP_003050967.1| recombination factor protein RarA [Methylovorus sp. SIP3-4]
 gi|253985583|gb|ACT50440.1| AAA ATPase central domain protein [Methylovorus sp. SIP3-4]
          Length = 440

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 68/338 (20%), Positives = 120/338 (35%), Gaps = 51/338 (15%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L   N + +      LRP TL++  GQ       K    A   ++  L  ++  GPPG+G
Sbjct: 4   LFQPN-TPDAPLAERLRPATLDDVVGQKHLLGEGKPLRLA--FQSGKLPSMILWGPPGVG 60

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSI 119
           KTTLA+++A      F   S  V++   D+   +   +        R +LF+DE+HR + 
Sbjct: 61  KTTLARLIANTADAEFIPLSA-VLSGIKDIREAVERAQHTLQQSGRRTILFVDEVHRFNK 119

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             ++   P +E   +  +    E PS       LSR  +             L +R  + 
Sbjct: 120 GQQDAFLPFVESGLITFIGATTENPSFEVNSALLSRARVFVLQALSEADLAELLERARVN 179

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
           +                      +A++DE   ++   + G  R     +  + + A  + 
Sbjct: 180 MSPE-------------------MALSDEVKEQVLAYADGDARRLLNFVEGLFNAALTSG 220

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
              I  E   + +                    + R   GG    + ISA     R +  
Sbjct: 221 LTEINAEFLQSTMASK-----------------LRRFDKGGEAFYDQISALHKSVRGSNP 263

Query: 298 DLIEPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
           D    + ++       P   GR L+ +A + +GI  P 
Sbjct: 264 DAALYWFLRMIDGGADPLYLGRRLIRMAVEDIGIADPR 301


>gi|326791959|ref|YP_004309780.1| MgsA AAA+ ATPase domain-containing protein [Clostridium lentocellum
           DSM 5427]
 gi|326542723|gb|ADZ84582.1| MgsA AAA+ ATPase domain-containing protein [Clostridium lentocellum
           DSM 5427]
          Length = 440

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 83/350 (23%), Positives = 129/350 (36%), Gaps = 56/350 (16%)

Query: 2   MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD    ++     ED+ + S +RP  L E  GQ       K+   A KA  + L  ++F 
Sbjct: 1   MDLFEYINEKKGNEDSPLASRMRPTKLSEIVGQHHLLEEDKLLYRAIKA--DKLQSLIFY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAAL------LTNLEDRDVLFIDEI 114
           GPPG GKTT+A+V+A     +F   +     KA  + A+       +    + ++FIDEI
Sbjct: 59  GPPGTGKTTIAKVIANTTKAHFIVLNATTSGKAEIIKAVEDAKLQRSMTGKKTIIFIDEI 118

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++ L P  ED  L L+    E P     +  +SR       + V  L     D
Sbjct: 119 HRFNKAQQDALLPYTEDGTLVLIGATTENPYFEVNRALISR-------SLVFELKPLETD 171

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
                I+   Y  E       RG       VT++A   +AMR+ G  R A   +      
Sbjct: 172 DVKKIIKEAVYNKE-------RGLGAYKADVTEDALDYLAMRTAGDARNALNAIELAVMT 224

Query: 233 AEVAHAKTIT-------REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETI 285
              +    I          +   AL     DK G +  D+                   I
Sbjct: 225 TSRSEDGIIHITISVLEECVQKKAL---HYDKKGDNHYDV-------------------I 262

Query: 286 SAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           SA +   R +       Y+ +       P+   R ++  A + +G   P 
Sbjct: 263 SAFIKSMRGSDPQATAHYLARMIAAGEDPKFIARRIVICASEDVGNADPQ 312


>gi|53804168|ref|YP_114220.1| recombination factor protein RarA [Methylococcus capsulatus str.
           Bath]
 gi|53757929|gb|AAU92220.1| ATPase, AAA family [Methylococcus capsulatus str. Bath]
          Length = 435

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 80/336 (23%), Positives = 122/336 (36%), Gaps = 46/336 (13%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           +S + SQ  AD   LRPRTL+E+ GQ+      +   E+   R   L  ++F GPPG GK
Sbjct: 1   MSADFSQPLAD--RLRPRTLDEYIGQLHLIEPGRPLYESI--RRGRLHSMIFWGPPGTGK 56

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALL------TNLEDRDVLFIDEIHRLSIIV 121
           TTLA++VAR     F   S  V++   ++   L           R +LF+DE+HR +   
Sbjct: 57  TTLARLVARHADAEFLPVSA-VLSGVKEIREALARAVQFKAAGRRAILFVDEVHRFNKSQ 115

Query: 122 EEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           ++     +ED  +  +    E PS       LSR  +             + DR      
Sbjct: 116 QDAFLAHVEDGTVSFIGATTENPSFEVNSALLSRARVYVLKALTEADLLGVIDR------ 169

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
                     +  +RG    GL ++D         + G  R    LL    D  + A   
Sbjct: 170 --------ALSDAERGLGGRGLNMSDPVRMAYVRAADGDARRLLNLLEITADLLD-AGQT 220

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            ++ E+A   L                      R    G      ISA     R +  D 
Sbjct: 221 VVSEEVARQVLASG----------------TTRRFDKQGEEFYNQISALHKSVRGSSPDA 264

Query: 300 IEPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
              ++ +       P    R L+ IA + +G   P 
Sbjct: 265 ALYWLCRMLDGGCDPLYLARRLVRIASEDIGNADPK 300


>gi|313201003|ref|YP_004039661.1| aaa atpase central domain-containing protein [Methylovorus sp.
           MP688]
 gi|312440319|gb|ADQ84425.1| AAA ATPase central domain protein [Methylovorus sp. MP688]
          Length = 440

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 69/338 (20%), Positives = 119/338 (35%), Gaps = 51/338 (15%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L   N + +      LRP TL++  GQ       K    A   ++  L  ++  GPPG+G
Sbjct: 4   LFQPN-TPDAPLAERLRPATLDDVVGQKHLLGEGKPLRLA--FQSGKLPSMILWGPPGVG 60

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSI 119
           KTTLA+++A      F   S  V++   D+   +   +        R +LF+DE+HR + 
Sbjct: 61  KTTLARLIANTADAEFIPLSA-VLSGIKDIREAVERAQHTLQQSGRRTILFVDEVHRFNK 119

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             ++   P +E   +  +    E PS       LSR  +             L +R    
Sbjct: 120 GQQDAFLPFVESGLITFIGATTENPSFEVNSALLSRARVFVLQALSEADLAELLER---- 175

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                           R      +A++DE   ++   + G  R     +  + + A  + 
Sbjct: 176 ---------------ARANMAPDMALSDEVKEQVLAYADGDARRLLNFVEGLFNAALTSG 220

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
              I  E   + +                    + R   GG    + ISA     R +  
Sbjct: 221 LTEINAEFLQSTMASK-----------------LRRFDKGGEAFYDQISALHKSVRGSNP 263

Query: 298 DLIEPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
           D    + ++       P   GR L+ +A + +GI  P 
Sbjct: 264 DAALYWFLRMIDGGADPLYLGRRLIRMAVEDIGIADPR 301


>gi|260909479|ref|ZP_05916183.1| replication-associated recombination protein A [Prevotella sp. oral
           taxon 472 str. F0295]
 gi|260636404|gb|EEX54390.1| replication-associated recombination protein A [Prevotella sp. oral
           taxon 472 str. F0295]
          Length = 424

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 81/334 (24%), Positives = 130/334 (38%), Gaps = 58/334 (17%)

Query: 16  DADISLLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           +     +RPR+L+++ GQ         L+  IEA +     +   +  GPPG+GKTTLAQ
Sbjct: 3   EPLAERMRPRSLDDYVGQKHLVGPNAVLRNMIEAGR-----IPSFILWGPPGVGKTTLAQ 57

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEIL 125
           +VA++L   F + S  V +   D+  ++   +          +LFIDEIHR S   ++ L
Sbjct: 58  IVAKKLETPFYTLSA-VTSGVKDVREVIEKAKGGRFFGSHSPILFIDEIHRFSKSQQDSL 116

Query: 126 YPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
             A+E   + L+    E PS   ++  LSR  L    +        L +R          
Sbjct: 117 LGAVEKGIVTLIGATTENPSFEVIRPLLSRCQLYVLQSLSKEDLEDLIER---------- 166

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
               LKT V    +   + V + AA      S G  R    +L  V + +       I  
Sbjct: 167 ---ALKTDV--SLQQRHIEVKENAAL--IRYSGGDARKLLNILELVVEASPANANVLIDD 219

Query: 244 EIADAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           E     L +   A DK G    D+                   +SA +   R +  D   
Sbjct: 220 ETVVKCLQQNPLAYDKDGEMHYDI-------------------VSAFIKSIRGSDPDAAL 260

Query: 302 PYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +M +       P+   R L+  A + +G+  P+
Sbjct: 261 YWMARMIEGGEDPQFIARRLVISAAEDIGLANPN 294


>gi|307260915|ref|ZP_07542601.1| Replication-associated recombination protein A [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306869482|gb|EFN01273.1| Replication-associated recombination protein A [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 443

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 81/341 (23%), Positives = 126/341 (36%), Gaps = 52/341 (15%)

Query: 8   LSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           +S + S++   + + +R RTL E+ GQ       K    A +A       ++F GPPG G
Sbjct: 1   MSFDFSEDFRPLPARMRSRTLAEYIGQAHLIGEGKPLRRAIEAGHS--HSMIFWGPPGTG 58

Query: 67  KTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           KTTLA+++A          S        I +A + A L      R +LF+DE+HR +   
Sbjct: 59  KTTLAEIIAHHFDAEVERLSAVTSGVKEIREAIERAKLNRQTGRRTLLFVDEVHRFNKSQ 118

Query: 122 EEILYPAMEDFQLDLM--VGEGPSARSVKINLSR-----FTLIAATTRVGLLTNPLQDRF 174
           ++   P +ED  +  +    E PS       LSR        + A     +LTN L D+ 
Sbjct: 119 QDAFLPHIEDGTIIFIGATTENPSFELNNALLSRAKIYILKPLQAVEIAQVLTNALYDK- 177

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
                             +RG       + D     +A    G  R A   L  + D AE
Sbjct: 178 ------------------ERGLGNESYYIEDNVIELLADYVNGDARFALNCLELMSDMAE 219

Query: 235 VAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRD 294
           ++       +  + ALL   + +              AR   GG    + ISA     R 
Sbjct: 220 ISPQG----KHLNKALLAEVLGER------------QARFDKGGDRYYDLISALHKSVRG 263

Query: 295 AIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +  D    +  +       P    R L+ IA + +G   P 
Sbjct: 264 SSPDGALYWYARILTAGGDPLYVARRLLAIASEDIGNADPR 304


>gi|166712096|ref|ZP_02243303.1| recombination factor protein RarA [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 458

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 70/327 (21%), Positives = 120/327 (36%), Gaps = 45/327 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RPRTL++  GQ    +       A +  +  +  ++  GPPG GKTTLA ++A 
Sbjct: 24  PLAERMRPRTLDDMVGQKRLLAPDSALRRAFE--SGRVHSMILWGPPGCGKTTLALLLAH 81

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAME 130
                F++ S  V++   ++  +L           R VLF+DE+HR +   ++   P +E
Sbjct: 82  YADAEFKAISA-VLSGLPEVRQVLAEADQRFADGRRTVLFVDEVHRFNKAQQDAFLPHIE 140

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
              +  +    E PS       LSR  +                  G+  +     ++  
Sbjct: 141 RGTILFVGATTENPSFELNSALLSRCRVHVLE--------------GVSPQDIVEALQRA 186

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
               +RG     + V++ +  EIA  + G  R A  LL    + A          EI   
Sbjct: 187 LHDAERGLGQQTIQVSEASLLEIASAADGDVRRALTLLEIAAELATGEGG-----EITPR 241

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            LL++  D+               R    G    + ISA     R +  D    ++ +  
Sbjct: 242 TLLQVLADRT-------------RRFDKNGEQFYDQISALHKSVRSSNPDAALYWLTRML 288

Query: 309 FI--QRTPRGRLLMPIAWQHLGIDIPH 333
                 T   R L  +A + +G+  P 
Sbjct: 289 DGGCDPTYLARRLTRMAIEDIGLADPR 315


>gi|332799117|ref|YP_004460616.1| AAA ATPase central domain-containing protein [Tepidanaerobacter sp.
           Re1]
 gi|332696852|gb|AEE91309.1| AAA ATPase central domain protein [Tepidanaerobacter sp. Re1]
          Length = 445

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 80/348 (22%), Positives = 146/348 (41%), Gaps = 51/348 (14%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M D+  +   + ++    ++  +RP+TL+EF GQ       KV  +  +  ++++  ++ 
Sbjct: 4   MNDQTSIFDMDKNKTPGPLADRMRPQTLDEFEGQEHLLGEGKVLRKLIE--SDSITSMIL 61

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDE 113
            GPPG+GKTTLA+++A +    F + S  V++   ++  ++   E       R +LFIDE
Sbjct: 62  WGPPGVGKTTLAKIIAEKTHAKFENFSA-VLSGIKEIREVMKQAEERRLYGQRTLLFIDE 120

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++   P +E   + L+    E PS       LSR  +           NPL+
Sbjct: 121 IHRFNKSQQDAFLPFVEKGDIILIGATTENPSFELNSALLSRSKVFTL--------NPLK 172

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
               I +      ++      +RG     + ++DE   ++A+ S G  R+A   L     
Sbjct: 173 PENIILL------LKRAIKDKERGLGKMNVDISDETLEKLAVYSNGDARVALNTLELSAL 226

Query: 232 FAEVAHAKT--ITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISA 287
            A  A   +  IT +I + A  +     DK G +  +L                   ISA
Sbjct: 227 IAIPAKDGSIYITNDILEQAFQKKTFLYDKKGEEHYNL-------------------ISA 267

Query: 288 GLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                R++  D    ++ +       P    R ++ IA + +G+  P 
Sbjct: 268 FHKSIRNSDSDAAVYWLARMLESGEDPLYIARRMIRIASEDIGLAEPK 315


>gi|331090669|ref|ZP_08339518.1| hypothetical protein HMPREF9477_00161 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330400083|gb|EGG79734.1| hypothetical protein HMPREF9477_00161 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 440

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 82/348 (23%), Positives = 137/348 (39%), Gaps = 52/348 (14%)

Query: 2   MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD    +  N  ++++ + S LRP  LEE  GQ       K+   A   RA+ L  ++F 
Sbjct: 1   MDLFEYMRENTKEKESPLASRLRPTKLEEVVGQQHIIGKDKLLYRAI--RADKLSSIIFY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDE 113
           GP G GKTTLA+V+A      F   +   IA   D+ A++   +        R +LFIDE
Sbjct: 59  GPSGTGKTTLAKVIANTTSAEFMQMNA-TIAGKKDMEAVIEQAKNNLGMYGKRTILFIDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++ L P +ED  + L+    E P        +SR       + V  L    +
Sbjct: 118 IHRFNKGQQDYLLPFVEDGTVILIGATTENPYFEVNGALISR-------SSVFELKPLER 170

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
           +   I ++   Y+ E       +G       + ++A   ++  S G  R A   +     
Sbjct: 171 EDIKILLKRAVYDTE-------KGMGTYRAEIDEDALEFLSDISGGDARNALNAVELGIL 223

Query: 232 FAEVAHAKT--ITREIADAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISA 287
               +      IT E+A+  + +     DK G +  D                   TISA
Sbjct: 224 TTPRSDDGKIHITLEVAEQCIQKRVVRYDKTGDNHYD-------------------TISA 264

Query: 288 GLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +   R +  +    Y+ +  +     +   R +M  A + +G   P+
Sbjct: 265 FIKSMRGSDPNAAVYYLAKMLYAGEDIKFIARRIMICASEDVGNADPN 312


>gi|332975396|gb|EGK12290.1| AAA family ATPase [Desmospora sp. 8437]
          Length = 410

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 79/344 (22%), Positives = 128/344 (37%), Gaps = 44/344 (12%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M+          ++ A ++  +RPRTL+E  GQ       K+   + +A  + L  +L  
Sbjct: 1   MNLFDYGQEQEKEKTAPLAARMRPRTLDEIVGQSHILGRGKLLRRSIEA--DQLSSILLY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDE 113
           GPPG GKTTLA+V+A      F   +  VIA   ++  +    ++       R +LFIDE
Sbjct: 59  GPPGTGKTTLAKVIANTTQARFEQLNA-VIAGVAEIRRITQEAKEQLGMYDLRTLLFIDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++ L P +ED  + L+    E PS       LSR       +R+  L    +
Sbjct: 118 IHRFNKSQQDALLPFVEDGTIILIGATTENPSFEVNSALLSR-------SRLFQLHPLTE 170

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
           +      R    + E       RG       V +EA   +   + G  R     L     
Sbjct: 171 EELKSLARRALMDEE-------RGLGNFRTQVEEEALDHMVRAAGGDARNMLNALELAVT 223

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
                                    ++  + +  +    I R   GG    +TISA +  
Sbjct: 224 TTPPKENGIRRITP-----------EVAEESIQRK----IVRYDKGGDNHYDTISAFIKS 268

Query: 292 PRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            R +  D    Y+ +       PR   R +   A + +G+  P 
Sbjct: 269 MRGSDPDAALYYLAKMIHAGEDPRFIARRVFIHAAEDVGMADPR 312


>gi|328473159|gb|EGF44007.1| recombination factor protein RarA [Vibrio parahaemolyticus 10329]
          Length = 449

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 75/327 (22%), Positives = 122/327 (37%), Gaps = 42/327 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP+T+E++ GQ       K    A +A    +  ++  GPPG GKTTLA+V A 
Sbjct: 16  PLAARMRPQTIEQYIGQQHILGPGKPLRRALEAGH--VHSMILWGPPGTGKTTLAEVAAN 73

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAME 130
                    S  V +   ++ A +           R +LF+DE+HR +   ++   P +E
Sbjct: 74  YANAEVERVSA-VTSGVKEIRAAIEKARENKMAGRRTILFVDEVHRFNKSQQDAFLPHIE 132

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           D  +  +    E PS       LSR        RV  LT+  ++   + +     + E  
Sbjct: 133 DGTVTFIGATTENPSFELNNALLSR-------ARVYKLTSLDKEEISLALNQAINDKE-- 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
                RG   T     D     +A    G  R++   L  + D AE        +EI   
Sbjct: 184 -----RGLGDTPANFADNVLDRLAELVNGDARMSLNYLELLYDMAEDNAQGE--KEITLK 236

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  +A +K             ++R    G +  + ISA     R +  D    +  +  
Sbjct: 237 LLAEVAGEK-------------VSRFDNKGDIWYDLISAVHKSIRGSNPDAALYWAARMI 283

Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIPH 333
                P    R L+ IA + +G   P 
Sbjct: 284 AAGCDPLYIARRLLAIASEDVGNADPR 310


>gi|154484609|ref|ZP_02027057.1| hypothetical protein EUBVEN_02325 [Eubacterium ventriosum ATCC
           27560]
 gi|149734457|gb|EDM50374.1| hypothetical protein EUBVEN_02325 [Eubacterium ventriosum ATCC
           27560]
          Length = 439

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 83/346 (23%), Positives = 137/346 (39%), Gaps = 65/346 (18%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           S N  +E    S LRP+TL++  GQ       K+   A KA  + +  ++F GPPG GKT
Sbjct: 9   SVNSEKESPLASRLRPKTLDQVVGQEHIIGKDKLLYRAIKA--DKISSIIFYGPPGTGKT 66

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIV 121
           TLA+V+A     +F   +  V A   D+  ++   +        + +LF+DEIHR +   
Sbjct: 67  TLAKVIANTTSADFMQLNATV-AGKKDMEDVVAKAKQNMAMSGRKTILFVDEIHRFNKGQ 125

Query: 122 EEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           ++ L P +ED  + L+    E P        +SR                      I   
Sbjct: 126 QDYLLPFVEDGTVILIGATTENPYFEVNSALISR---------------------SIVFE 164

Query: 180 LNFYEIEDLKTIVQR-------GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           L+   +E++KT++ R       G  +    + D+A   +A  S G  R A   +      
Sbjct: 165 LHPLSVENIKTLILRAVNDKTDGMGIYNGVIDDDAVMFLAEISNGDARTALNAVELGILT 224

Query: 233 AEVAHAKT--ITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAG 288
            + A      IT E+A   + + A   DK G +  D                   TISA 
Sbjct: 225 TDPAQDGKIHITLEVAQQCVQKRALKYDKSGDNHYD-------------------TISAF 265

Query: 289 LSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           +   R +  D    Y+ +  +   +     R ++  A + +G+  P
Sbjct: 266 IKSMRGSDPDAAVYYLSRMLYAGESVDFISRRILICAAEDVGMANP 311


>gi|319792075|ref|YP_004153715.1| aaa atpase central domain protein [Variovorax paradoxus EPS]
 gi|315594538|gb|ADU35604.1| AAA ATPase central domain protein [Variovorax paradoxus EPS]
          Length = 430

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 73/337 (21%), Positives = 118/337 (35%), Gaps = 60/337 (17%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           S        LRP+TL E  GQ         L++  E+ +         +  GPPG GKTT
Sbjct: 4   SSHQPLAERLRPKTLGEVIGQQHLLGPGMSLRIAFESGQ-----PHSCILWGPPGTGKTT 58

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------EDRDVLFIDEIHRLSIIV 121
           +A+++A      F S S  V+    D+   +           + R ++F+DE+HR +   
Sbjct: 59  IARLMADAFDAQFLSISA-VLGGVKDIREAVERATAARDGLEQRRTIVFVDEVHRFNKSQ 117

Query: 122 EEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           ++   P +E      +    E PS       LSR                          
Sbjct: 118 QDAFLPHVESGLFTFIGATTENPSFEVNSALLSR---------------------AAVYV 156

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAA-CEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           L      DL+ IV +   +  +   DE A   +   + G  R     L  +   A     
Sbjct: 157 LQPLTEGDLEQIVAKAQSIQAVPAIDETAIDRLVAYADGDARRLLNTLETLAVAARA--- 213

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
                 I+D  LLR+  ++             + R   GG    +TISA     R +  D
Sbjct: 214 -EKLANISDEWLLRVLGER-------------MRRYDKGGEQFYDTISALHKSVRGSDPD 259

Query: 299 LIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
               + ++       PR   R L+ +A + +G+  P 
Sbjct: 260 AALYWFVRMLDGGADPRYMARRLVRMASEDIGLADPR 296


>gi|260768112|ref|ZP_05877046.1| ATPase AAA family [Vibrio furnissii CIP 102972]
 gi|260616142|gb|EEX41327.1| ATPase AAA family [Vibrio furnissii CIP 102972]
          Length = 449

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 67/327 (20%), Positives = 111/327 (33%), Gaps = 42/327 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP+T+E++ GQ       K    A +A    +  ++  GPPG GKTTLA+V A 
Sbjct: 16  PLAARMRPQTVEQYIGQQHVLGPGKPLRRALEAGH--IHSMILWGPPGTGKTTLAEVAAN 73

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAME 130
                    S  V +   ++ A +           R +LF+DE+HR +   ++   P +E
Sbjct: 74  YANAEVERVSA-VTSGVKEIRAAIEKARENKLAGRRTILFVDEVHRFNKSQQDAFLPHIE 132

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           D  +  +    E PS       LSR  +   T+          D                
Sbjct: 133 DGTVTFIGATTENPSFELNNALLSRARVYKLTSLSQTEIRQALD--------------QA 178

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
               +RG         D     ++    G  R++   L  + D AE          ++  
Sbjct: 179 IEDTERGLGKQVAQFHDNVLDRLSELVNGDARMSLNYLELLYDMAEENEQGEKQITLSLL 238

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           A +                   +AR    G +  + ISA     R +  D    +  +  
Sbjct: 239 AEVAGEK---------------VARFDNKGDIWYDLISAVHKSIRGSNPDGALYWAARMI 283

Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIPH 333
                P    R L+ IA + +G   P 
Sbjct: 284 SAGCDPLYIARRLLAIASEDVGNADPR 310


>gi|127512950|ref|YP_001094147.1| recombination factor protein RarA [Shewanella loihica PV-4]
 gi|126638245|gb|ABO23888.1| AAA ATPase, central domain protein [Shewanella loihica PV-4]
          Length = 443

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 78/327 (23%), Positives = 118/327 (36%), Gaps = 47/327 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP TL ++ GQ       K   +A +A       ++F GPPG GKTTLA++VA 
Sbjct: 14  PLAARMRPETLSQYIGQDHLLGEGKPLRQALEAGRA--HSMMFWGPPGTGKTTLAELVAH 71

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAM 129
               +    S  V +   ++ A + + +        R +LF+DE+HR +   ++   P +
Sbjct: 72  YANAHVERISA-VTSGVKEIRAAIEHAKSVAQSRGQRTLLFVDEVHRFNKSQQDAFLPFI 130

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ED  +  +    E PS       LSR  +         L   LQD   I I     E   
Sbjct: 131 EDGTVIFIGATTENPSFEINNALLSRARV--------YLIKRLQDEEIIKIVRQALE--- 179

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
                +RG     L + +E A ++A    G  R A  L+  + D             I  
Sbjct: 180 ---DGERGLGKRQLKMPNEVAGKLASLCDGDARKALNLIELMSDMLPDGGEFNAQMLIEV 236

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           A       DK G    DL                   ISA     R +  D    +  + 
Sbjct: 237 AGQQLAGFDKNGDQYYDL-------------------ISAVHKSIRGSAPDAALYWYCRM 277

Query: 308 GFIQRTPR--GRLLMPIAWQHLGIDIP 332
                 P    R L+ IA + +G   P
Sbjct: 278 LEGGCDPLYVARRLLAIASEDIGNADP 304


>gi|239814294|ref|YP_002943204.1| recombination factor protein RarA [Variovorax paradoxus S110]
 gi|239800871|gb|ACS17938.1| AAA ATPase central domain protein [Variovorax paradoxus S110]
          Length = 430

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 73/334 (21%), Positives = 115/334 (34%), Gaps = 54/334 (16%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           S        LRP+TL E  GQ            A ++        +  GPPG GKTT+A+
Sbjct: 4   SSHQPLAERLRPKTLGEVIGQQHLLGPGMPLRIAFESGQ--PHSCILWGPPGTGKTTIAR 61

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNL--------EDRDVLFIDEIHRLSIIVEEI 124
           ++A      F S S  V+    D+   +           + R ++F+DE+HR +   ++ 
Sbjct: 62  LMADAFDAQFLSISA-VLGGVKDIRDAVERATAARDGLEQRRTIVFVDEVHRFNKSQQDA 120

Query: 125 LYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             P +E      +    E PS       LSR                          L  
Sbjct: 121 FLPHVESGLFTFIGATTENPSFEVNSALLSR---------------------AAVYVLQP 159

Query: 183 YEIEDLKTIVQRGAKLTGLA-VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
               DLK IV +   +  +  + D A   +   + G  R     L  +   A       I
Sbjct: 160 LTEADLKQIVAKAQAIQAVPGIEDTAIDRLVAYADGDARRLLNTLETLAVAARAEKLGHI 219

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T    D  LLR+  ++             + R   GG    +TISA     R +  D   
Sbjct: 220 T----DEWLLRVLGER-------------MRRYDKGGEQFYDTISALHKSVRGSDPDASL 262

Query: 302 PYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            + ++       PR   R L+ +A + +G+  P 
Sbjct: 263 YWFVRMLDGGADPRYMARRLVRMASEDIGLADPR 296


>gi|21108233|gb|AAM36872.1| ATPase [Xanthomonas axonopodis pv. citri str. 306]
          Length = 429

 Score =  162 bits (411), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 72/322 (22%), Positives = 120/322 (37%), Gaps = 45/322 (13%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRTL+E  GQ    +       A +  +  +  ++  GPPG GKTTLA ++A      
Sbjct: 1   MRPRTLDEMVGQKRLLAPDSALRRAVE--SGRVHSMILWGPPGCGKTTLALLLAHYADAE 58

Query: 82  FRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F++ S  V++   D+  +L           R VLF+DE+HR +   ++   P +E   + 
Sbjct: 59  FKAISA-VLSGLPDVRQVLAEAAQRFAGGRRTVLFVDEVHRFNKAQQDAFLPHIERGTIL 117

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
            +    E PS       LSR  +                  G+  +     ++      +
Sbjct: 118 FVGATTENPSFELNSALLSRCRVHVLE--------------GVSPQDIVEALQRALRDAE 163

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           RG     + V++ +  EIA  + G  R A  LL    + A          EI    LL++
Sbjct: 164 RGLGAETIQVSEASLLEIASAADGDVRRALTLLEIAAELAAGEGG-----EITPQTLLQV 218

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
             D+               R    G    + ISA     R +  D    ++ +       
Sbjct: 219 LADRT-------------RRFDKNGEQFYDQISALHKSVRSSNPDAALYWLTRMLDGGCD 265

Query: 314 P--RGRLLMPIAWQHLGIDIPH 333
           P    R L  +A + +G+  P 
Sbjct: 266 PAYLARRLTRMAIEDIGLADPR 287


>gi|328948385|ref|YP_004365722.1| ATPase AAA central domain protein [Treponema succinifaciens DSM
           2489]
 gi|328448709|gb|AEB14425.1| AAA ATPase central domain protein [Treponema succinifaciens DSM
           2489]
          Length = 805

 Score =  162 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 69/350 (19%), Positives = 128/350 (36%), Gaps = 59/350 (16%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           + L S      +   + +RPRTL+E+ GQ       ++   A  A  + L  V+F GPPG
Sbjct: 2   DELFSNLKDSHEPLAARMRPRTLDEYIGQEHIVGKGRLLRRAIAA--DQLTSVIFYGPPG 59

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRL 117
            GKTTLA+V+A     NF + +  V+    D+   +++        + + +LF+DE+HR 
Sbjct: 60  TGKTTLARVIANHTSSNFITLNA-VLTGVADIRKAISDAETQKNLYKRKTILFVDEVHRW 118

Query: 118 SIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINL--SRFTLIAATTRVGLLTNPLQDR 173
           +   ++ L P +E+  + L+    E P     K  +  SR   +   T+  LL       
Sbjct: 119 NKSQQDALLPWVENGTIILIGATTENPFFEVNKALVSRSRVFQLKPLTKTDLLNAA---- 174

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                       +   +  +RG     +     A   +   + G  R     L    +  
Sbjct: 175 ------------KQTLSDTERGYGKWNVEFEKGALEHLIETANGDARSLLNALELAVETT 222

Query: 234 EVAHAKTI------TREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETI 285
                 +       ++E  + ++ +     D+ G    D+                   I
Sbjct: 223 PEKWPPSFGSTIYISKEACEESIQKKVVLYDRDGDYHYDI-------------------I 263

Query: 286 SAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           SA +   R    D    ++ +       P    R ++  A +  G+  P+
Sbjct: 264 SAFIKSLRGRDPDAACYWLARMVKAGEDPHFIFRRMLISACEDTGLADPN 313


>gi|71906933|ref|YP_284520.1| recombination factor protein RarA [Dechloromonas aromatica RCB]
 gi|71846554|gb|AAZ46050.1| Recombination protein MgsA [Dechloromonas aromatica RCB]
          Length = 437

 Score =  162 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 72/339 (21%), Positives = 117/339 (34%), Gaps = 52/339 (15%)

Query: 7   LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           L S N    +A +   LRP   +E  GQ       K    A ++       ++  GPPG+
Sbjct: 4   LFSSNAVDRNAPLAEQLRPLIPDEVIGQQHLLGPGKPLRLAFESGQ--PHSMILWGPPGV 61

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSI 119
           GKTTLA+++A +    F + S  V +   ++   +   E       R +LF+DEIHR + 
Sbjct: 62  GKTTLARMMATQFKCEFIALSA-VFSGIKEVREAVVQAEMWRGQGKRTILFVDEIHRFNK 120

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             ++   P +E      +    E PS       LSR ++    +        L DR    
Sbjct: 121 AQQDGFLPFVESGLFTFIGATTENPSFEVNSALLSRASVYVLKSLDEAEMGTLFDR---- 176

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEI-AMRSRGTPRIAGRLLRRVRDFAEVA 236
                           R          D  A E     + G  R    LL + R  A  A
Sbjct: 177 -------------ACDRALADLSF---DSGARERLIGLADGDARRLLNLLEQARTAAHAA 220

Query: 237 HAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAI 296
               +     ++ + +                  + R   GG    + ISA     R + 
Sbjct: 221 GIAAVDGAFIESTMAQN-----------------LRRFDKGGDAFYDQISALHKSVRGSS 263

Query: 297 EDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            D    +  +       PR   R ++ +AW+ +G+  P 
Sbjct: 264 PDGALYWFCRMLDGGADPRYLARRIIRMAWEDIGLADPR 302


>gi|70731237|ref|YP_260978.1| recombination factor protein RarA [Pseudomonas fluorescens Pf-5]
 gi|68345536|gb|AAY93142.1| ATPase, AAA family [Pseudomonas fluorescens Pf-5]
          Length = 441

 Score =  162 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 76/337 (22%), Positives = 121/337 (35%), Gaps = 48/337 (14%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           L R+        + LR   L+E+ GQ    +  K   EA +    AL  ++F GPPG+GK
Sbjct: 3   LFRSAPIAQPLAARLRATNLDEYVGQQHLLARGKPLREALEQ--GALHSMIFWGPPGVGK 60

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLT-------NLEDRDVLFIDEIHRLSII 120
           TTLA+++A     +F + S  V+A   ++   +            R +LF+DE+HR +  
Sbjct: 61  TTLARLLAEVSDAHFETVSA-VLAGVKEIRQAVEIAKQQAGQYGRRTILFVDEVHRFNKS 119

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++   P +ED  L  +    E PS       LSR  +    +        L  R     
Sbjct: 120 QQDAFLPYVEDGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAALGTLVQRALTE- 178

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
                         +RG     L+++DE    +   + G  R    LL    D AE    
Sbjct: 179 --------------ERGLGKRQLSLSDEGFQMLLSAADGDGRRMLNLLENASDLAEDGGE 224

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
            ++        L  L  D                R   GG    + ISA     R +  D
Sbjct: 225 ISVDL------LQSLLGD-------------TRRRFDKGGEAFYDQISALHKSVRGSNPD 265

Query: 299 LIEPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
               +  +       P    R ++ +A + +G   P 
Sbjct: 266 GALYWFARMLDGGCDPLYLARRVVRMASEDIGNADPR 302


>gi|312171938|emb|CBX80195.1| Uncharacterized protein ycaJ [Erwinia amylovora ATCC BAA-2158]
          Length = 447

 Score =  162 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 83/342 (24%), Positives = 125/342 (36%), Gaps = 42/342 (12%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M +     SRN  Q     + +RPRTL E+ GQ    +  K    A +A    L  ++  
Sbjct: 1   MSNLSLDFSRNEFQ--PLAARMRPRTLAEYIGQQHLLAAGKPLPRAIEAGQ--LHSMILW 56

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIH 115
           GPPG GKTTLA+++      +    S        I +A + A    +   R +LF+DE+H
Sbjct: 57  GPPGTGKTTLAEIIGHYGQADVERISAVTSGVKDIREAIECARQNRHAGRRTILFVDEVH 116

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P +ED  +  +    E PS       LSR        RV LL +   D 
Sbjct: 117 RFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSR-------ARVYLLKSLTSDD 169

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
               +     + E       RG     + + +     IA    G  R A   L  + D A
Sbjct: 170 IATVLDQAMQDGE-------RGYGKDNILLPENTRDMIAQLVNGDARRALNTLEMMADMA 222

Query: 234 EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
           EV       RE+    L  +  ++              AR    G    + ISA     R
Sbjct: 223 EVNAKGK--RELTPQLLNEVCGERS-------------ARFDNKGDRFYDLISALHKSVR 267

Query: 294 DAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +  D    +  +       P    R L+ IA + +G   P 
Sbjct: 268 GSAPDAALYWYARIITAGGDPLYVARRLLAIASEDIGNADPR 309


>gi|323498307|ref|ZP_08103309.1| recombination factor protein RarA [Vibrio sinaloensis DSM 21326]
 gi|323316735|gb|EGA69744.1| recombination factor protein RarA [Vibrio sinaloensis DSM 21326]
          Length = 448

 Score =  162 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 68/342 (19%), Positives = 113/342 (33%), Gaps = 42/342 (12%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M                 + +RP+ +E++ GQ       K    A +A    +  ++  G
Sbjct: 1   MSNFSFDFSGDEDFRPLAARMRPQNIEQYIGQQHILGEGKPLRRALEAGH--VHSMILWG 58

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALL------TNLEDRDVLFIDEIH 115
           PPG GKTTLA+V A          S  V +   ++ A +           R +LF+DE+H
Sbjct: 59  PPGTGKTTLAEVAANYANAEVERVSA-VTSGVKEIRAAIEKARENKRAGRRTILFVDEVH 117

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P +ED  +  +    E PS       LSR  +   T+            
Sbjct: 118 RFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNALLSRARVYKLTSLSQA-------- 169

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                      +E      +RG         D A   +A    G  R++   L  + D A
Sbjct: 170 ------DILQALEQAIQDSERGLGAIKAQFVDNALDRLAELVNGDARMSLNYLELLYDMA 223

Query: 234 EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
           E          ++  A +                   ++R    G +  + ISA     R
Sbjct: 224 EDDDQGVKQITLSLLAEVAGEK---------------VSRFDNKGDIWYDLISAVHKSIR 268

Query: 294 DAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +  D    +  +       P    R L+ IA + +G   P 
Sbjct: 269 GSNPDAALYWSARMIAAGCDPLYIARRLLAIASEDVGNADPR 310


>gi|188534279|ref|YP_001908076.1| recombination factor protein RarA [Erwinia tasmaniensis Et1/99]
 gi|188029321|emb|CAO97198.1| Putative polynucleotide ATPase protein [Erwinia tasmaniensis
           Et1/99]
          Length = 447

 Score =  162 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 74/326 (22%), Positives = 117/326 (35%), Gaps = 40/326 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RPRTL E+ GQ    +  K    A +A    L  ++  GPPG GKTTLA+++  
Sbjct: 15  PLAARMRPRTLAEYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEIIGH 72

Query: 77  ELGVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
               +    S        I +A + A    +   R +LF+DE+HR +   ++   P +ED
Sbjct: 73  YGQADVERISAVTSGIKDIREAIERARQNRHAGRRTILFVDEVHRFNKSQQDAFLPHIED 132

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             +  +    E PS       LSR  +    +      + + D                 
Sbjct: 133 GTITFIGATTENPSFELNSALLSRARVYLLKSLTDKDISAVLD--------------QAM 178

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
              +RG     + + D     IA    G  R A   L  + D AEV       RE+    
Sbjct: 179 QDSERGYGKDNIVLPDNTRDMIAQLVNGDARRALNTLEMMADMAEVNGKGK--RELTSTL 236

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           L  ++ ++              AR    G    + ISA     R +  D    +  +   
Sbjct: 237 LNEVSGERS-------------ARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIIT 283

Query: 310 IQRTPR--GRLLMPIAWQHLGIDIPH 333
               P    R L+ IA + +G   P 
Sbjct: 284 AGGDPLYVARRLLAIASEDVGNADPR 309


>gi|188586400|ref|YP_001917945.1| Recombination protein MgsA [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179351087|gb|ACB85357.1| Recombination protein MgsA [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 447

 Score =  162 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 73/347 (21%), Positives = 127/347 (36%), Gaps = 52/347 (14%)

Query: 2   MDREGL-LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD     L      +      +RPR+L++F GQ +     K+   A +A  + L  ++  
Sbjct: 3   MDLFNYNLEEKKFNDTPLADRMRPRSLDDFVGQEQILGKGKLLRRAIEA--DRLTSIVLY 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDE 113
           GPPG GKTT+A+++A E    +      V +   DL  ++   ++         ++FIDE
Sbjct: 61  GPPGSGKTTIAKIIA-ENTEKYFYQLNAVTSGVKDLREVVEKSKENRSYYSKGTIMFIDE 119

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++ L P +ED  + L+    E P        LSR  +             L 
Sbjct: 120 IHRFNKSQQDALLPYVEDGTITLIGATTENPYFTVNNPLLSRSRIFKLEQLGIQEIETLL 179

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR- 230
            R                   ++G     + +  +A   +   S G  RIA   L     
Sbjct: 180 RRS--------------LQDEEKGLGNYNVEINQDALQHLTDCSNGDIRIALNALELAVL 225

Query: 231 -DFAEVAHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISA 287
                    + IT+E+A+ ++ + A   D+ G    D+                   ISA
Sbjct: 226 TTVPNENGTRIITKEVAEESIQKKAVYYDRDGDYHYDV-------------------ISA 266

Query: 288 GLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
            +   R +  D    ++ +       P    R ++  A + +G   P
Sbjct: 267 FIKSLRGSDPDAGLYWLARMLSAGEDPLFIARRMLIFASEDIGNADP 313


>gi|209695310|ref|YP_002263239.1| recombination factor protein RarA [Aliivibrio salmonicida LFI1238]
 gi|208009262|emb|CAQ79528.1| conserevd hypothetical protein [Aliivibrio salmonicida LFI1238]
          Length = 448

 Score =  162 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 74/342 (21%), Positives = 122/342 (35%), Gaps = 42/342 (12%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M    L            + +RP+ +E++ GQ    +  K    A +A    +  ++  G
Sbjct: 1   MSNFSLDFSAGDDFRPLAARMRPQNIEQYIGQQHLLAVGKPLRRALEAGQ--IHSMILWG 58

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIH 115
           PPG GKTTLA+V A          S  V +   D+ A +   ++      R +LF+DE+H
Sbjct: 59  PPGTGKTTLAEVAANYANAEVERVSA-VTSGVKDIRAAIDKAKENQTTGRRTILFVDEVH 117

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P +E+  +  +    E PS       LSR  +    +         QD 
Sbjct: 118 RFNKSQQDAFLPHIENGTITFIGATTENPSFELNNALLSRARVYKLKSLEK------QDI 171

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
             I        IE   T   RG       + D+   ++A    G  R++   L  + D A
Sbjct: 172 VQI--------IEQALTDKNRGLNDDNFVLPDDVKLQLADLVSGDARMSLNYLELLHDMA 223

Query: 234 EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
           E  H      ++   A +                   +AR    G +  + ISA     R
Sbjct: 224 EENHEGKKVVDLPLLAEVAGEK---------------LARFDNKGDMWYDLISAVHKSIR 268

Query: 294 DAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +  D    +  +       P    R L+ IA + +G   P 
Sbjct: 269 GSNPDAALYWAARIMAAGGDPLYVVRRLLAIASEDIGNADPR 310


>gi|257456871|ref|ZP_05622052.1| recombination factor protein RarA [Treponema vincentii ATCC 35580]
 gi|257445580|gb|EEV20642.1| recombination factor protein RarA [Treponema vincentii ATCC 35580]
          Length = 751

 Score =  162 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 70/343 (20%), Positives = 124/343 (36%), Gaps = 39/343 (11%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M ++   +   ++     + +RPR+L+E+ GQ       ++   A +A  + L  V+F G
Sbjct: 1   MSKDLFETAAAAERLPLAARMRPRSLDEYIGQEHIVGKGRLLRRAIQA--DRLSSVIFFG 58

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEI 114
           PPG GKTTLAQV+A     NF S +  V+A    +   + + E          +LF+DE+
Sbjct: 59  PPGTGKTTLAQVIANHTKSNFLSLNA-VLAGVQQIRDAIASAEQYKKLYGKPTILFVDEV 117

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++ L P +E+  +  +    E P     K  +SR  +               +
Sbjct: 118 HRWNRAQQDALLPWVENGTVIFIGATTENPFFEVNKALVSRSRVFQLKALTDADLYRTAE 177

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R                   +RG     ++ TD A   +   + G  R     L    + 
Sbjct: 178 RC--------------LRDTERGYGKWKVSFTDGALEHLIETAAGDARSLLNALELAVET 223

Query: 233 AEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEP 292
           +          EI           +      D             G    + ISA +   
Sbjct: 224 SVEHWPPPAGTEITIDMQAAEESIQQKAVLYD-----------KDGDYHYDIISAFIKSI 272

Query: 293 RDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           R +  D    ++ +      +P    R ++  A + +G+  PH
Sbjct: 273 RGSDPDAALYWLARMVRAGESPHFIFRRMLISACEDIGLADPH 315


>gi|191636983|ref|YP_001986149.1| recombination factor protein RarA [Lactobacillus casei BL23]
 gi|190711285|emb|CAQ65291.1| Chromosome segregation helicase (Putative) [Lactobacillus casei
           BL23]
 gi|327381009|gb|AEA52485.1| hypothetical protein LC2W_0149 [Lactobacillus casei LC2W]
 gi|327384185|gb|AEA55659.1| hypothetical protein LCBD_0159 [Lactobacillus casei BD-II]
          Length = 448

 Score =  162 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 83/348 (23%), Positives = 132/348 (37%), Gaps = 63/348 (18%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD+    + N        S +RP+TL+EF GQ       KV     +   + +  ++F G
Sbjct: 1   MDQSLFQNGNFQ---PLASRMRPQTLDEFVGQTHLLGKDKVLSNLIE--HDEISSMIFWG 55

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFIDEIH 115
           PPG+GKTTLA+++AR     F + S  V +   ++  ++        L  + ++F+DEIH
Sbjct: 56  PPGVGKTTLARIIARRTKAQFVTFSA-VTSGIKEIKQVMKEAEQNRELGQKTIVFVDEIH 114

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSR---FTLIAATT--RVGLLTN 168
           R +   ++   P +E   + L+    E PS       LSR   F L   T+   V LL  
Sbjct: 115 RFNKAQQDAFLPYVERGSIILIGATTENPSFEVNAALLSRTRVFVLHGLTSAELVDLLQR 174

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            L+D                     RG  L  + +  +   +IA  + G  RIA   L  
Sbjct: 175 ALKDP--------------------RGYGLQKVKIGKKLLAQIADFANGDARIALNTLEM 214

Query: 229 VRDFAEVAHAKTITREIADAAL---LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETI 285
               AE         +   A L     L  DK G +  +L                   I
Sbjct: 215 AVTNAETKGGVVTVTQADVAQLLTKKALLYDKNGEEHYNL-------------------I 255

Query: 286 SAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
           SA     R++  D    ++ +       P    R L+  A + +G+  
Sbjct: 256 SALHKSMRNSDVDAAIYWLARMLEAGEDPLYVARRLVRFASEDIGMAD 303


>gi|90021340|ref|YP_527167.1| recombination factor protein RarA [Saccharophagus degradans 2-40]
 gi|89950940|gb|ABD80955.1| Recombination protein MgsA / PAS/PAC sensor signal transduction
           histidine kinase [Saccharophagus degradans 2-40]
          Length = 444

 Score =  162 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 72/343 (20%), Positives = 124/343 (36%), Gaps = 48/343 (13%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M  + L       +    + +RPRTL+E+ GQ       K     A  R + +  ++  G
Sbjct: 1   MSSQNLFDTAPLHQ-PLAARMRPRTLKEYMGQTHLLGKGKPL-RLALERGQ-IHSMILWG 57

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEI 114
           PPG+GKT+LA+++A E+  +F + S  V++   ++ A +   E +        VLF+DE+
Sbjct: 58  PPGVGKTSLARLLANEIQGHFIAISA-VLSGVKEIRAAVAEAEQQRNMYGRTTVLFVDEV 116

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++   P +ED  +  +    E PS       LSR  +                
Sbjct: 117 HRFNKSQQDAFLPYVEDGTVVFVGATTENPSFEVNNALLSRCRVYVLK------------ 164

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
             G   +     ++      +RG     L V ++ A  +   + G  R    LL    D 
Sbjct: 165 --GFTQQDLTELLQSALADTKRGLGARELNVAEDGANLLIQAADGDARRLLNLLEIASDL 222

Query: 233 AEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEP 292
            E                     + +  D L         R   GG +  E ISA     
Sbjct: 223 VE-------------------DGECIDLDILTQVVTGDFRRFDKGGDIFYEQISALHKSV 263

Query: 293 RDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           R +       +  +       P    R ++ +A + +G   P 
Sbjct: 264 RGSDPHAALYWFARMLDGGCDPLYIARRVVRMASEDIGNADPR 306


>gi|78047616|ref|YP_363791.1| recombination factor protein RarA [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78036046|emb|CAJ23737.1| putative ATPase [Xanthomonas campestris pv. vesicatoria str. 85-10]
          Length = 457

 Score =  162 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 72/327 (22%), Positives = 120/327 (36%), Gaps = 45/327 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RPRTLEE  GQ    +       A +  +  +  ++  GPPG GKTTLA ++A 
Sbjct: 24  PLAERMRPRTLEEMVGQKRLLAPDSALRRAVE--SGRVHSMILWGPPGCGKTTLALLLAH 81

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAME 130
                F++ S  V++   ++  +L           R VLF+DE+HR +   ++   P +E
Sbjct: 82  YADAEFKAISA-VLSGLPEVRQVLAEAAQRFAGGRRTVLFVDEVHRFNKAQQDAFLPHIE 140

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
              +  +    E PS       LSR  +                  G+  +     ++  
Sbjct: 141 RGTILFVGATTENPSFELNSALLSRCRVHVLE--------------GVSPQDIVEALQRA 186

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
               +RG     + V++ +  EIA  + G  R A  LL    + A          EI   
Sbjct: 187 LRDAERGLGAETIQVSEASLLEIASAADGDVRRALTLLEIAAELAAGEGG-----EITPQ 241

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            LL++  D+               R    G    + ISA     R +  D    ++ +  
Sbjct: 242 TLLQVLADRT-------------RRFDKNGEQFYDQISALHKSVRSSNPDAALYWLTRML 288

Query: 309 FIQRTP--RGRLLMPIAWQHLGIDIPH 333
                P    R L  +A + +G+  P 
Sbjct: 289 DGGCDPAYLARRLTRMAIEDIGLADPR 315


>gi|117920496|ref|YP_869688.1| recombination factor protein RarA [Shewanella sp. ANA-3]
 gi|117612828|gb|ABK48282.1| Recombination protein MgsA [Shewanella sp. ANA-3]
          Length = 443

 Score =  162 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 79/338 (23%), Positives = 123/338 (36%), Gaps = 48/338 (14%)

Query: 8   LSRNVSQE-DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           LS N + +     + +RPRT+ E+ GQ       +   +A +A       ++  GPPG G
Sbjct: 4   LSFNFAPDFRPLAARMRPRTIAEYIGQAHLLGEGQPLRQALEAGRA--HSMMLWGPPGTG 61

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSI 119
           KTTLA+++A     +    S  V +   D+ A +   +        R +LF+DE+HR + 
Sbjct: 62  KTTLAELIAHYSNAHVERISA-VTSGVKDIRAAIEQAQAVAQSRGQRTLLFVDEVHRFNK 120

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             ++   P +ED  +  +    E PS       LSR        RV L+    QD     
Sbjct: 121 SQQDAFLPFIEDGTVIFIGATTENPSFEINNALLSR-------ARVYLIKRLSQDEIVHI 173

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
           I     + E       RG     L +  +   ++A    G  R A  LL  + D      
Sbjct: 174 ITQALTDPE-------RGLGQRQLVMPTDVLNKLAQLCDGDARKALNLLELMSDMVADGG 226

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
           + T    +  A       DK G    DL                   ISA     R +  
Sbjct: 227 SFTTEMLVQVAGHQVAGFDKNGDQFYDL-------------------ISAVHKSIRGSAP 267

Query: 298 DLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           D    +  +       P    R L+ IA + +G   P+
Sbjct: 268 DAALYWFCRILEGGGDPLYVARRLLAIASEDVGNADPN 305


>gi|262394648|ref|YP_003286502.1| ATPase AAA family [Vibrio sp. Ex25]
 gi|262338242|gb|ACY52037.1| ATPase AAA family [Vibrio sp. Ex25]
          Length = 449

 Score =  162 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 71/327 (21%), Positives = 115/327 (35%), Gaps = 42/327 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP+T+E++ GQ       K    A +A    +  ++  GPPG GKTTLA+V A 
Sbjct: 16  PLAARMRPQTIEQYIGQQHILGPGKPLRRALEAGH--IHSMILWGPPGTGKTTLAEVAAN 73

Query: 77  ELGVNFRSTSGPVIAKAGDLAALL------TNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
                    S  V +   ++ A +           R +LF+DE+HR +   ++   P +E
Sbjct: 74  YANAEVERVSA-VTSGVKEIRAAIDKARENKMAGRRTILFVDEVHRFNKSQQDAFLPHIE 132

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           D  +  +    E PS       LSR  +   T+      +   D                
Sbjct: 133 DGTVTFIGATTENPSFELNNALLSRARVYKLTSLGQSEISLALD--------------QA 178

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
                RG         D     +A    G  R++   L  + D AE        +EI   
Sbjct: 179 INDKDRGLGNIPAHFADNVLDRLAELVNGDARMSLNYLELLYDMAEDNAQGE--KEITLK 236

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  +A +K             ++R    G +  + ISA     R +  D    +  +  
Sbjct: 237 LLAEVAGEK-------------VSRFDNKGDIWYDLISAVHKSIRGSNPDAALYWAARMI 283

Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIPH 333
                P    R L+ IA + +G   P 
Sbjct: 284 AAGCDPLYIARRLLAIASEDVGNADPR 310


>gi|77918707|ref|YP_356522.1| recombination factor protein RarA/unknown domain fusion protein
           [Pelobacter carbinolicus DSM 2380]
 gi|77544790|gb|ABA88352.1| Recombination protein MgsA [Pelobacter carbinolicus DSM 2380]
          Length = 726

 Score =  162 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 81/347 (23%), Positives = 129/347 (37%), Gaps = 56/347 (16%)

Query: 6   GLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
            L S+  S   +   S +RPRTLEE+ GQ       ++   A   RA+ L  ++F GPPG
Sbjct: 2   NLFSQASSFSSEPLASRMRPRTLEEYVGQDHILGEGRLLRRAI--RADQLSSLIFYGPPG 59

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRL 117
            GKTTLAQV+A      F S +  V++   DL   + +          R +LF+DE+HR 
Sbjct: 60  TGKTTLAQVIANSTASRFVSMNA-VLSGVKDLREAIEDARQSQEYYDKRTILFVDEVHRW 118

Query: 118 SIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
           +   ++ L P +E   + L+    E P     K  +SR       +RV  L    ++   
Sbjct: 119 NKSQQDALLPWVEKGTIILIGATTENPYFEVNKALVSR-------SRVFQLLGLTEENLR 171

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF--- 232
             +     +        QRG     +    +A   +   + G  R     L+   +    
Sbjct: 172 QIVTQTLQDK-------QRGYGKWQVEFEPDALDHLVRVASGDARSLLNALQLAVETTPE 224

Query: 233 -----AEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISA 287
                A      T++          +  DK G    D                   TISA
Sbjct: 225 SFPPPANSRIHITLSAAEESIQQKAVLYDKEGDYHFD-------------------TISA 265

Query: 288 GLSEPRDAIEDLIEPYMIQQGFIQRTPRG--RLLMPIAWQHLGIDIP 332
            +   R +  D    +M +       PR   R ++  A + +G+  P
Sbjct: 266 FIKSLRGSDPDAALYWMARMVRAGEDPRYIFRRMLISASEDVGMADP 312


>gi|229591234|ref|YP_002873353.1| recombination factor protein RarA [Pseudomonas fluorescens SBW25]
 gi|229363100|emb|CAY50103.1| conserevd hypothetical protein [Pseudomonas fluorescens SBW25]
          Length = 440

 Score =  162 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 73/328 (22%), Positives = 119/328 (36%), Gaps = 48/328 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + LR   L+E+ GQ    +  K   EA +    AL  ++F GPPG+GKTTLA+++A+
Sbjct: 12  PLAARLRSTNLDEYVGQEHLLARGKPLREALEQ--GALHSMIFWGPPGVGKTTLARLLAK 69

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLT-------NLEDRDVLFIDEIHRLSIIVEEILYPAM 129
               +F + S  V+A   ++   +            R +LF+DE+HR +   ++   P +
Sbjct: 70  VSDAHFETVSA-VLAGVKEIRQAVEVAKQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYV 128

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ED  L  +    E PS       LSR  +    +   +    L  R              
Sbjct: 129 EDGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEVAMQKLLHRALNE---------- 178

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
                 +G     L+V++E    +   + G  R    LL    D AE             
Sbjct: 179 -----DKGLGKRQLSVSEEGFKILLTAADGDGRRFLNLLENASDLAEDGG---------- 223

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
                    ++G D L         R   GG    + ISA     R +  D    +  + 
Sbjct: 224 ---------EIGVDLLQSLLGDTRRRFDKGGEAFYDQISALHKSVRGSNPDGALYWFARM 274

Query: 308 GFIQRTP--RGRLLMPIAWQHLGIDIPH 333
                 P    R ++ +A + +G   P 
Sbjct: 275 IDGGCDPLYLARRVVRMASEDIGNADPR 302


>gi|163801973|ref|ZP_02195869.1| seryl-tRNA synthetase [Vibrio sp. AND4]
 gi|159174114|gb|EDP58922.1| seryl-tRNA synthetase [Vibrio sp. AND4]
          Length = 449

 Score =  162 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 75/327 (22%), Positives = 120/327 (36%), Gaps = 42/327 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP T+E++ GQ       K    A +A    +  ++  GPPG GKTTLA+V A 
Sbjct: 16  PLAARMRPETIEQYIGQQHILGPGKPLRRALEAGH--IHSMILWGPPGTGKTTLAEVAAN 73

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAME 130
                    S  V +   ++ A +           R +LF+DE+HR +   ++   P +E
Sbjct: 74  YANAEVERVSA-VTSGVKEIRAAIEKARENKMAGRRTILFVDEVHRFNKSQQDAFLPHIE 132

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           D  +  +    E PS       LSR        RV  L +  +D   + +     + E  
Sbjct: 133 DGTVTFIGATTENPSFELNNALLSR-------ARVYKLMSLDKDEISLALNQAITDKE-- 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
                RG   T     D     +A    G  R++   L  + D AE        +EI   
Sbjct: 184 -----RGLGNTSAHFADNVLERLAELVNGDARMSLNYLELLYDMAEDNAQG--DKEITLR 236

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  +A +K             ++R    G +  + ISA     R +  D    +  +  
Sbjct: 237 LLAEVAGEK-------------VSRFDNKGDIWYDLISAVHKSIRGSNPDAALYWSARMI 283

Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIPH 333
                P    R L+ IA + +G   P 
Sbjct: 284 AAGCDPLYIARRLLAIASEDIGNADPR 310


>gi|292493395|ref|YP_003528834.1| ATPase AAA [Nitrosococcus halophilus Nc4]
 gi|291581990|gb|ADE16447.1| AAA ATPase central domain protein [Nitrosococcus halophilus Nc4]
          Length = 454

 Score =  162 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 73/328 (22%), Positives = 115/328 (35%), Gaps = 48/328 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+ L++F GQ           +A +        ++  GPPG GKTTLA+++A 
Sbjct: 28  PLADRMRPQKLDDFVGQSHLLDKGAPLRQAIET--GRPHSMVLWGPPGTGKTTLARLIAH 85

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAM 129
                F S S  V+A   ++ A +   +          VLF+DE+HR +   ++   P +
Sbjct: 86  YCQAQFISLSA-VLAGVKEVRAAVDKAQRVRSEEGYGTVLFVDEVHRFNKSQQDAFLPYV 144

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E+     +    E PS       LSR  +             L +R              
Sbjct: 145 ENGTFIFIGATTENPSFELNNALLSRCRVYVLKCLRVGDICTLINR-------------- 190

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
                ++G     L + +     +A  + G  R A  LL    D AE    KTI  E+ +
Sbjct: 191 ALADPEQGLGRRSLTMAETLCQRLAEAADGDARRALNLLEIASDLAE---KKTIPEELLN 247

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
             L                    + R   GG    E ISA     R +  D    ++ + 
Sbjct: 248 QVLRGG-----------------VRRFDKGGEAFYEQISALHKAVRGSAPDAALYWLCRM 290

Query: 308 GFIQRTP--RGRLLMPIAWQHLGIDIPH 333
                 P    R L+ IA + +G   P 
Sbjct: 291 LDGGCDPSYLARRLVRIASEDIGNADPR 318


>gi|212218615|ref|YP_002305402.1| recombination factor protein RarA [Coxiella burnetii CbuK_Q154]
 gi|212012877|gb|ACJ20257.1| ATPase, AAA family [Coxiella burnetii CbuK_Q154]
          Length = 427

 Score =  162 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 73/320 (22%), Positives = 118/320 (36%), Gaps = 41/320 (12%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  LEEF GQ       K    A +     L  ++  GPPG GKTTLA+++A++ G  
Sbjct: 1   MRPGCLEEFVGQSHLLGKDKPLFRAIEK--GKLHSMILWGPPGSGKTTLAEIMAQKAGAR 58

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR----DVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
             S S  V+A   D+  ++   E       +LF+DE+H  +   ++   P +E   + L+
Sbjct: 59  VESISA-VLAGVKDIRDVVERAERHKGQATILFVDEVHGFNKSQQDAFLPHVEKGTITLI 117

Query: 138 --VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
               E PS +     LSR       TRV +L    +      +       E+     +RG
Sbjct: 118 GATTENPSFQLNNALLSR-------TRVYVLKQLTEADLLSIL-------ENALANEERG 163

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255
                L + +     I   + G  R    LL  + DF                AL     
Sbjct: 164 LGKKALEIPEPLRRRIVQFADGDARQCLNLLEIIADF----------------ALEENGR 207

Query: 256 DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP- 314
             +    +D      + R    G    + ISA     R +  D    ++ +       P 
Sbjct: 208 FVVDDGLIDKVLTEGLRRFDKRGEAFYDQISALHKSVRGSDPDASLYWLSRLLDGGCDPF 267

Query: 315 -RGRLLMPIAWQHLGIDIPH 333
              R ++ +A + +G   P 
Sbjct: 268 YVARRVVRMASEDIGNADPR 287


>gi|152978774|ref|YP_001344403.1| recombination factor protein RarA [Actinobacillus succinogenes
           130Z]
 gi|150840497|gb|ABR74468.1| AAA ATPase central domain protein [Actinobacillus succinogenes
           130Z]
          Length = 447

 Score =  162 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 74/332 (22%), Positives = 118/332 (35%), Gaps = 53/332 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RPRTL+E+ GQ       K    A ++       ++  GPPG GKTTLA+++A 
Sbjct: 15  PLAARMRPRTLDEYCGQQHLIGQGKPLRRAIESGHA--HSMILWGPPGTGKTTLAEIIAY 72

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAME 130
            +       S  V +   D+   +   +         +LF+DE+HR +   ++   P +E
Sbjct: 73  RINAEVERLSA-VTSGVKDIREAIERAKRNRLADRQTILFVDEVHRFNKSQQDAFLPHIE 131

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           D  +  +    E PS       LSR       TRV +L +         ++    + E  
Sbjct: 132 DGTIIFIGATTENPSFELNNALLSR-------TRVYILKSLTTADVQRVLQQAVADEE-- 182

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
                RG     L +       +A    G  R+A   L  + D AE              
Sbjct: 183 -----RGLGKARLNLQANLLHLLAEYVNGDARLALNCLELMADMAEEDENGK-------- 229

Query: 249 ALLRLAIDKMGFDQLDLRYLTMI-----ARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
                        ++D   LT +     AR   GG    + ISA     R +  D    +
Sbjct: 230 -------------KIDRTLLTEVLGERQARFDKGGDRFYDLISAVHKSIRGSAPDAALYW 276

Query: 304 MIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
             +       P    R L+ IA + +G   P 
Sbjct: 277 YARIITAGGDPLYVARRLLAIASEDIGNADPR 308


>gi|156741065|ref|YP_001431194.1| recombination factor protein RarA [Roseiflexus castenholzii DSM
           13941]
 gi|156232393|gb|ABU57176.1| AAA ATPase central domain protein [Roseiflexus castenholzii DSM
           13941]
          Length = 544

 Score =  162 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 82/343 (23%), Positives = 134/343 (39%), Gaps = 51/343 (14%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           RE  LSR         + +RPR L+EF GQ       K+   A     +AL  ++  GPP
Sbjct: 13  REEALSRQA----PLAARMRPRALDEFVGQDHIVGEGKLLRRAI--TNDALFSIILWGPP 66

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHR 116
           G GKTTLA+++A     +F   S  V A   DL  ++   +DR        ++FIDEIHR
Sbjct: 67  GSGKTTLARIIADTTHAHFEQLSA-VSAGVADLRRVVKEAQDRLGMFQQRTIVFIDEIHR 125

Query: 117 LSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRF 174
            +   ++ + P +ED  + L+    E PS        SR        RV +L +   ++ 
Sbjct: 126 FNKAQQDAILPYVEDGTIILIGATTENPSFEVNPALRSR-------ARVFVLESLTDEQI 178

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD--F 232
           G+        ++   T  +RG     + +  +A   +   S G  R A   L        
Sbjct: 179 GVI-------VDRALTDAERGLGALNVLLAADARGYLINMSNGDARTALNALEAAALAKS 231

Query: 233 AEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEP 292
             +   + +T +    AL   A                  +    G +  + ISA     
Sbjct: 232 PGIGGKRLLTVDDIRDALQSRA-----------------VQYDKNGELHYDAISALHKSV 274

Query: 293 RDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           RD+  D    ++ +       P    R ++ +A + +G+  PH
Sbjct: 275 RDSDPDAALYWLGRMLDGGEDPLYIARRVVRMAIEDIGMADPH 317


>gi|237748949|ref|ZP_04579429.1| recombination factor protein RarA [Oxalobacter formigenes OXCC13]
 gi|229380311|gb|EEO30402.1| recombination factor protein RarA [Oxalobacter formigenes OXCC13]
          Length = 430

 Score =  162 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 68/328 (20%), Positives = 112/328 (34%), Gaps = 50/328 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP+ ++E  GQ       K    A ++       ++  GPPG+GKTTLA+++A 
Sbjct: 5   PLAERLRPKNIDEVVGQQHLLGPGKPLRVAFESGE--PHSMILWGPPGVGKTTLARLMAD 62

Query: 77  ELGVNFRSTSGPVIAKAGDLAA-------LLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
                F + S  V++   D+         + +N   R +LF+DE+HR +   ++   P +
Sbjct: 63  GFNAEFIALSA-VLSGVKDIRDAVEHAKIIRSNSGRRTILFVDEVHRFNKSQQDAFLPHV 121

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E      +    E PS       LSR  +    +      N L  R              
Sbjct: 122 ESGLFTFIGATTENPSFEVNNALLSRAAVYVLQSLGNDDLNTLLTR-------------A 168

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           L  I+        L ++ EA   + M + G  R     L      A       I   +  
Sbjct: 169 LDEILT------DLTLSGEARDMLVMSADGDARKLLNNLEITAQAATTKKQAVIDVTLLK 222

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
             L                    + R    G    + ISA     R +  D    +  + 
Sbjct: 223 ETLG-----------------DAMRRFDNKGDHFYDQISALHKSVRGSHPDAALYWFTRM 265

Query: 308 GFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                 PR   R ++ +AW+ +G+  P 
Sbjct: 266 LDGGVDPRYLARRIIRMAWEDIGLADPR 293


>gi|268315897|ref|YP_003289616.1| AAA ATPase central domain-containing protein [Rhodothermus marinus
           DSM 4252]
 gi|262333431|gb|ACY47228.1| AAA ATPase central domain protein [Rhodothermus marinus DSM 4252]
          Length = 458

 Score =  162 bits (410), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 79/344 (22%), Positives = 132/344 (38%), Gaps = 55/344 (15%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           E LL+            +RPRTL+EF GQ       K+   A +A  + L  ++F GPPG
Sbjct: 10  ERLLAAQA----PLAERMRPRTLDEFVGQEHILGPGKLLRRAIEA--DRLSSLIFYGPPG 63

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRL 117
            GKTTLA+++AR    +F + +  V+A   D+   +          + R +LFIDE+HR 
Sbjct: 64  TGKTTLARIIARTSRAHFTALNA-VLAGVKDIRDAIEAAQERLRLHQQRTILFIDEVHRF 122

Query: 118 SIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
           +   ++ L P +E+  +  +    E P    +K  +SR  +             +     
Sbjct: 123 NKAQQDALLPHVENGTVIFIGATTENPYFEVIKPLVSRSRVFELKPLTPEHLRRI----- 177

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA-- 233
                     E      +RG     + V  EA   +   + G  R     L    +    
Sbjct: 178 ---------AEQALADPERGYGRRNVVVDPEALDHLIDVANGDARSLLNALELAVETTPP 228

Query: 234 EVAHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
           + +    IT  +A+ ++ R A   DK G    D                   TISA +  
Sbjct: 229 DASGRIHITLPVAEESIQRRAVLYDKEGDAHFD-------------------TISAFIKS 269

Query: 292 PRDAIEDLIEPYMIQQGFIQRTPRG--RLLMPIAWQHLGIDIPH 333
            R +  D    ++ +  +    PR   R ++  A + +G+  P 
Sbjct: 270 LRGSDPDAALYWLARMIYAGEDPRFILRRMLIFAAEDVGLADPR 313


>gi|229550919|ref|ZP_04439644.1| recombination ATPase [Lactobacillus rhamnosus LMS2-1]
 gi|258538369|ref|YP_003172868.1| recombination factor protein RarA [Lactobacillus rhamnosus Lc 705]
 gi|229315744|gb|EEN81717.1| recombination ATPase [Lactobacillus rhamnosus LMS2-1]
 gi|257150045|emb|CAR89017.1| AAA ATPase [Lactobacillus rhamnosus Lc 705]
          Length = 448

 Score =  162 bits (410), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 84/348 (24%), Positives = 134/348 (38%), Gaps = 63/348 (18%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD+    + N        S +RP+TL+EF GQ       KV     +   + +  ++F G
Sbjct: 1   MDQSLFQNGNFQ---PLASRMRPQTLDEFVGQTHLLGKNKVLSNLIE--HDEISSMIFWG 55

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFIDEIH 115
           PPG+GKTTLA+++AR     F + S  V +   ++  ++        L  + ++F+DEIH
Sbjct: 56  PPGVGKTTLARIIARRTQAQFVTFSA-VTSGIKEIKQVMKEAEQNRELGQKTIVFVDEIH 114

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSR---FTLIAATT--RVGLLTN 168
           R +   ++   P +E   + L+    E PS       LSR   F L   T+   V LL  
Sbjct: 115 RFNKAQQDAFLPYVERGSIILIGATTENPSFEVNAALLSRTRVFVLHGLTSAELVDLLQR 174

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            L+D                     RG  L  + ++ +   +IA  + G  RIA   L  
Sbjct: 175 ALKDP--------------------RGYGLQQVKISKKLLAQIADFANGDARIALNTLEM 214

Query: 229 VRDFAEVAHAKTITREIADAAL---LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETI 285
               AE  H      +   A L     L  DK G +  +L                   I
Sbjct: 215 AVTNAETKHDVVSVTQADVAQLLTKKALLYDKNGEEHYNL-------------------I 255

Query: 286 SAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
           SA     R++  D    ++ +       P    R L+  A + +G+  
Sbjct: 256 SALHKSMRNSDVDAAIYWLARMLEAGEDPLYIARRLVRFASEDVGMAD 303


>gi|289670475|ref|ZP_06491550.1| recombination factor protein RarA [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 457

 Score =  162 bits (410), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 72/327 (22%), Positives = 119/327 (36%), Gaps = 45/327 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RPRTL+E  GQ    +       A +  +  +  ++  GPPG GKTTLA ++A 
Sbjct: 24  PLAERMRPRTLDEMVGQKRLLAPDSALRRAVE--SGRVHSMILWGPPGCGKTTLALLLAH 81

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAME 130
                F++ S  V++   ++  +L           R VLF+DE+HR +   +    P +E
Sbjct: 82  YADAEFKAISA-VLSGLPEVRQVLAEAAQRFAGGRRTVLFVDEVHRFNKAQQYAFLPHIE 140

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
              +  +    E PS       LSR  +                  G+  +     ++  
Sbjct: 141 RGTILFVGATTENPSFELNSALLSRCRVHVLE--------------GVSPQDIVEALQRA 186

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
               +RG     + V++ A  EIA  + G  R A  LL    + A          EI   
Sbjct: 187 LHDAERGLGQQTIQVSEAALLEIASAADGDVRRALTLLEIAAELAMGEGG-----EITPR 241

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            LL++  D+               R    G    + ISA     R +  D    ++ +  
Sbjct: 242 TLLQVLADRT-------------RRFDKNGEQFYDQISALHKSVRSSNPDAALYWLTRML 288

Query: 309 FIQRTP--RGRLLMPIAWQHLGIDIPH 333
                P    R L  +A + +G+  P 
Sbjct: 289 DGGCDPAYLARRLTRMAIEDIGLADPR 315


>gi|259908928|ref|YP_002649284.1| recombination factor protein RarA [Erwinia pyrifoliae Ep1/96]
 gi|224964550|emb|CAX56062.1| Putative polynucleotide ATPase protein [Erwinia pyrifoliae Ep1/96]
          Length = 447

 Score =  162 bits (410), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 80/342 (23%), Positives = 124/342 (36%), Gaps = 42/342 (12%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M +     SRN  Q     + +RPRTL E+ GQ    +  K    A +AR   L  ++  
Sbjct: 1   MSNLSLDFSRNEFQ--PLAARMRPRTLAEYIGQQHLLAAGKPLPRAIEARH--LHSMILW 56

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIH 115
           GPPG GKTTLA+++ R    +    S        I +A + A    +   R +LF+DE+H
Sbjct: 57  GPPGTGKTTLAEIIGRYGQADVERISAVTSGVKEIREAIERARQNRHAGRRTILFVDEVH 116

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P +ED  +  +    E PS       LSR  +    +        + D 
Sbjct: 117 RFNKSQQDAFLPHIEDGTITFVGATTENPSFELNSALLSRARVYLLKSLTSEDIATVLD- 175

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                              +RG     + + +     IA    G  R A   L  + D A
Sbjct: 176 -------------QAMQDGERGYGNDNIVLPENTRNMIAQLVNGDARRALNTLEMMADMA 222

Query: 234 EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
           EV       RE+    L  ++ ++              AR    G    + ISA     R
Sbjct: 223 EVNGKGK--RELTPQLLNEVSGERS-------------ARFDNKGDRFYDLISALHKSVR 267

Query: 294 DAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +  D    +  +       P    R L+ IA + +G   P 
Sbjct: 268 GSAPDAALYWYARIITAGGDPLYVARRLLAIASEDVGNADPR 309


>gi|254489705|ref|ZP_05102901.1| ATPase, AAA family protein [Methylophaga thiooxidans DMS010]
 gi|224465114|gb|EEF81367.1| ATPase, AAA family protein [Methylophaga thiooxydans DMS010]
          Length = 441

 Score =  162 bits (410), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 70/328 (21%), Positives = 117/328 (35%), Gaps = 45/328 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+TL+++ GQ       K   +A    +     ++F GPPG GKTTLA+++A 
Sbjct: 14  PLADRMRPKTLDQYIGQAHLLGASKPLRQAI--ASGHPHSMIFWGPPGTGKTTLAKLIAG 71

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAM 129
                F + S  V+A   ++ A +   +        R +LF+DE+HR +   ++   P +
Sbjct: 72  YCDAEFMTISA-VLAGVKEVRAAVARAQQLQQEQGRRTMLFVDEVHRFNKSQQDAFLPYV 130

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ED     +    E PS       LSR  +    +        + DR      L       
Sbjct: 131 EDGTFTFIGATTENPSFELNNALLSRARVYVLKSLETTDLRQIIDRAMSNAEL------- 183

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
                  G    G+A+ DE   ++A  + G  R    LL    D A+      +      
Sbjct: 184 -------GLAERGIAIADELRDQLAQTADGDGRRVLNLLEIAIDLADSKGQAKVDETDLA 236

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
             L                    + R   GG    + ISA     R +  D    ++ + 
Sbjct: 237 EVLS-----------------GTLRRFDKGGEAFYDQISALHKSVRGSSPDAALYWLCRM 279

Query: 308 GFIQRTP--RGRLLMPIAWQHLGIDIPH 333
                 P    R ++ +A + +G   P 
Sbjct: 280 LDGGCDPVYLMRRVVRMAAEDIGNADPR 307


>gi|294141065|ref|YP_003557043.1| ATPase [Shewanella violacea DSS12]
 gi|293327534|dbj|BAJ02265.1| ATPase, AAA family [Shewanella violacea DSS12]
          Length = 443

 Score =  162 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 79/327 (24%), Positives = 120/327 (36%), Gaps = 47/327 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP  LE++ GQ       K   +A +A       ++F GPPG GKTTLA++VA 
Sbjct: 14  PLAARMRPEVLEQYIGQSHLLGEGKPLRKALEAGRA--HSMVFWGPPGTGKTTLAELVAH 71

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAM 129
               +    S  V +   ++ A + + +        R +LF+DE+HR +   ++   P +
Sbjct: 72  YANAHVERISA-VTSGVKEIRAAIEHAQNVAQSRGQRTLLFVDEVHRFNKSQQDAFLPFI 130

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ED  +  +    E PS       LSR        RV L+     D     +R    + E 
Sbjct: 131 EDGTVIFIGATTENPSFEINNALLSR-------ARVYLIKRLTNDEIIQIVRQALIDDE- 182

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
                 RG     L + DE A ++A    G  R A  L+  + D      + T    I  
Sbjct: 183 ------RGLGKRQLTIPDEVAEKLANVCDGDARKALNLIELMSDMIADGESFTEQMIIEV 236

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           A       DK G    DL                   ISA     R +  D    +  + 
Sbjct: 237 AGQQLAGFDKNGDQFYDL-------------------ISAVHKSIRGSAPDAALYWFCRM 277

Query: 308 GFIQRTPR--GRLLMPIAWQHLGIDIP 332
                 P    R L+ IA + +G   P
Sbjct: 278 LEGGCDPLYIARRLLAIASEDIGNADP 304


>gi|84367998|dbj|BAE69156.1| ATPase [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 430

 Score =  162 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 70/322 (21%), Positives = 119/322 (36%), Gaps = 45/322 (13%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRTL++  GQ    +       A +  +  +  ++  GPPG GKTTLA ++A      
Sbjct: 1   MRPRTLDDMVGQKRLLAPDSALRRAVE--SGRVHSMILWGPPGCGKTTLALLLAHYADAE 58

Query: 82  FRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F + S  V++   ++  +L           R VLF+DE+HR +   ++   P +E   + 
Sbjct: 59  FNAISA-VLSGLPEVRQVLAEAAQRFAGGRRTVLFVDEVHRFNKAQQDAFLPHIERGTIL 117

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
            +    E PS       LSR  +                  G+  +     ++      +
Sbjct: 118 FVGATTENPSFELNSALLSRCRVHVLE--------------GVSPQDIVEALQRALHDAE 163

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           RG     + V++ +  EIA  + G  R A  LL    + A          EI    LL++
Sbjct: 164 RGLGQQTIQVSEASLLEIASAADGDVRRALTLLEIAAELATGEGG-----EITPRTLLQV 218

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI--Q 311
             D+               R    G    + ISA     R +  D    ++ +       
Sbjct: 219 LADRT-------------RRFDKNGEQFYDQISALHKSVRSSNPDAALYWLTRMLDGGCD 265

Query: 312 RTPRGRLLMPIAWQHLGIDIPH 333
            T   R L  +A + +G+  P 
Sbjct: 266 PTYLARRLTRMAIEDIGLADPR 287


>gi|116493737|ref|YP_805471.1| recombination factor protein RarA [Lactobacillus casei ATCC 334]
 gi|239630989|ref|ZP_04674020.1| recombination factor protein RarA [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|301065310|ref|YP_003787333.1| helicase subunit of the Holliday junction resolvase-like ATPase
           [Lactobacillus casei str. Zhang]
 gi|116103887|gb|ABJ69029.1| Recombination protein MgsA [Lactobacillus casei ATCC 334]
 gi|239527272|gb|EEQ66273.1| recombination factor protein RarA [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|300437717|gb|ADK17483.1| Helicase subunit of the Holliday junction resolvase related ATPase
           [Lactobacillus casei str. Zhang]
          Length = 448

 Score =  162 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 83/348 (23%), Positives = 132/348 (37%), Gaps = 63/348 (18%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD+    + N        S +RP+TL+EF GQ       KV     +   + +  ++F G
Sbjct: 1   MDQSLFQNGNFQ---PLASRMRPQTLDEFVGQTHLLGKDKVLSNLIE--HDEISSMIFWG 55

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFIDEIH 115
           PPG+GKTTLA+++AR     F + S  V +   ++  ++        L  + ++F+DEIH
Sbjct: 56  PPGVGKTTLARIIARRTKAQFVTFSA-VTSGIKEIKQVMKEAEQNRELGQKTIVFVDEIH 114

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSR---FTLIAATT--RVGLLTN 168
           R +   ++   P +E   + L+    E PS       LSR   F L   T+   V LL  
Sbjct: 115 RFNKAQQDAFLPYVERGSIILIGATTENPSFEVNAALLSRTRVFVLHGLTSAELVDLLQR 174

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            L+D                     RG  L  + +  +   +IA  + G  RIA   L  
Sbjct: 175 ALKDP--------------------RGYGLQKVKIGKKLLAQIADFANGDARIALNTLEM 214

Query: 229 VRDFAEVAHAKTITREIADAAL---LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETI 285
               AE         +   A L     L  DK G +  +L                   I
Sbjct: 215 AVTNAETKGGVITVTQADVAQLLTKKALLYDKNGEEHYNL-------------------I 255

Query: 286 SAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
           SA     R++  D    ++ +       P    R L+  A + +G+  
Sbjct: 256 SALHKSMRNSDVDAAIYWLARMLEAGEDPLYVARRLVRFASEDIGMAD 303


>gi|317128226|ref|YP_004094508.1| ATPase AAA [Bacillus cellulosilyticus DSM 2522]
 gi|315473174|gb|ADU29777.1| AAA ATPase central domain protein [Bacillus cellulosilyticus DSM
           2522]
          Length = 442

 Score =  162 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 84/332 (25%), Positives = 132/332 (39%), Gaps = 51/332 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              S +RPRT+ E  GQ E      +   A +A  + L  ++F GPPG GKTTLA+V+A 
Sbjct: 15  PLASRMRPRTIHEVIGQKEIVGEGTLLRRAIEA--DQLTPMIFHGPPGTGKTTLAKVIAN 72

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAM 129
               +F   +  VIA   D+  +++  ++R        VLFIDEIHR +   ++ L P +
Sbjct: 73  STSAHFEQLNA-VIAGIKDVREVVSRAKERLKYDQEKTVLFIDEIHRFNKGQQDALLPFV 131

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ED  + L+    E P        LSR       +R+  L +   D     I     + + 
Sbjct: 132 EDGTVILIGATTENPMFEVNPALLSR-------SRLFRLQSLTNDDIKQVIHAAINDKD- 183

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT--ITREI 245
                 RG     + +  EA   +   + G  R A   L       +   + T  I  E 
Sbjct: 184 ------RGFGEYDITIASEALDHLVNVANGDARTALNALELAILTTDPNDSGTICIDLET 237

Query: 246 ADAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           A+A++ +     DK G    D                   TISA +   R +  D    +
Sbjct: 238 AEASIQKRVLQYDKSGDQHYD-------------------TISAFIKSIRGSDPDATLYW 278

Query: 304 MIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           + +  +    PR   R L   A + +G+  P+
Sbjct: 279 LAKMIYAGEDPRFIARRLYVHAAEDIGLADPN 310


>gi|254523765|ref|ZP_05135820.1| ATPase [Stenotrophomonas sp. SKA14]
 gi|219721356|gb|EED39881.1| ATPase [Stenotrophomonas sp. SKA14]
          Length = 425

 Score =  162 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 77/327 (23%), Positives = 121/327 (37%), Gaps = 55/327 (16%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRTL+E  GQ    +       A +  +  +  ++  GPPG GKTTLA ++A      
Sbjct: 1   MRPRTLDEMVGQKRLLAPDSALRRAVE--SGRVHSMILWGPPGCGKTTLALLLAEYSDAE 58

Query: 82  FRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           FR+ S  V++   ++  +L           R VLF+DE+HR +   ++   P +E   + 
Sbjct: 59  FRAISA-VLSGLPEVRQVLAEAAQRFAEGRRTVLFVDEVHRFNKAQQDAFLPHIERGTIL 117

Query: 136 LM--VGEGPSARSVKINLSRFTL-----IAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
            +    E PS       LSR  +     ++ T  V  L   L DR               
Sbjct: 118 FVGATTENPSFELNSALLSRCRVHVLEGVSPTDIVEALERALGDR--------------- 162

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
               +RG    G+ V  E   EIA  + G  R A  LL    + A     +         
Sbjct: 163 ----ERGLGDEGIEVAPELLLEIATAADGDVRRALTLLEIAAELAGGEGGRI-----TPQ 213

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L ++  D+               R   GG    + ISA     R +  D    ++ +  
Sbjct: 214 TLTQVLADRT-------------RRFDKGGEQFYDQISALHKSVRSSNPDAALYWLTRML 260

Query: 309 FIQRTP--RGRLLMPIAWQHLGIDIPH 333
                P    R L  +A + +G+  P 
Sbjct: 261 DGGCDPSYLARRLTRMAIEDIGLADPR 287


>gi|315179811|gb|ADT86725.1| recombination factor protein RarA [Vibrio furnissii NCTC 11218]
          Length = 449

 Score =  162 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 67/327 (20%), Positives = 111/327 (33%), Gaps = 42/327 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP+T+E++ GQ       K    A +A    +  ++  GPPG GKTTLA+V A 
Sbjct: 16  PLAARMRPQTVEQYIGQQHVLGPGKPLRRALEAGH--IHSMILWGPPGTGKTTLAEVAAN 73

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAME 130
                    S  V +   ++ A +           R +LF+DE+HR +   ++   P +E
Sbjct: 74  YANAEVERVSA-VTSGVKEIRAAIEKARENKLAGRRTILFVDEVHRFNKSQQDAFLPHIE 132

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           D  +  +    E PS       LSR  +   T+          D                
Sbjct: 133 DGTVTFIGATTENPSFELNNALLSRARVYKLTSLSQTEIRQALD--------------QA 178

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
               +RG         D     ++    G  R++   L  + D AE          ++  
Sbjct: 179 IADQERGLGKHAAHFHDNVLDRLSELVNGDARMSLNYLELLYDMAEENEQGEKQITLSLL 238

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           A +                   +AR    G +  + ISA     R +  D    +  +  
Sbjct: 239 AEVAGEK---------------VARFDNKGDIWYDLISAVHKSIRGSNPDGALYWAARMI 283

Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIPH 333
                P    R L+ IA + +G   P 
Sbjct: 284 SAGCDPLYIARRLLAIASEDVGNADPR 310


>gi|161485694|ref|NP_637341.2| recombination factor protein RarA [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|162017102|ref|YP_243284.2| recombination factor protein RarA [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188991669|ref|YP_001903679.1| recombination factor protein RarA [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167733429|emb|CAP51630.1| ATPase [Xanthomonas campestris pv. campestris]
          Length = 456

 Score =  162 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 72/327 (22%), Positives = 120/327 (36%), Gaps = 45/327 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RPRTL+E  GQ    +       A +  +  +  ++  GPPG GKTTLA ++A 
Sbjct: 24  PLAERMRPRTLDEMVGQKRLLAADSALRRAVE--SGRVHSMILWGPPGCGKTTLALLLAH 81

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAME 130
                F++ S  V++   D+  +L           R VLF+DE+HR +   ++   P +E
Sbjct: 82  YADAEFKAISA-VLSGLPDVRQVLAEAAQRFASGRRTVLFVDEVHRFNKAQQDAFLPHIE 140

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
              +  +    E PS       LSR  +                  G+  +     ++  
Sbjct: 141 RGTILFVGATTENPSFELNSALLSRCRVHVLE--------------GVSPQDIVEALQRA 186

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
               +RG     + V++ +  EIA  + G  R A  LL    + A          EI   
Sbjct: 187 LHDAERGLGQETIQVSEASLLEIASAADGDVRRALTLLEIAAELATGEGG-----EITPR 241

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            LL++  D+               R    G    + ISA     R +  D    ++ +  
Sbjct: 242 TLLQVLADRT-------------RRFDKNGEQFYDQISALHKSVRSSNPDAALYWLTRML 288

Query: 309 FIQRTP--RGRLLMPIAWQHLGIDIPH 333
                P    R L  +A + +G+  P 
Sbjct: 289 DGGCDPAYLARRLTRMAIEDIGLADPR 315


>gi|312961667|ref|ZP_07776165.1| ATPase, AAA family [Pseudomonas fluorescens WH6]
 gi|311283926|gb|EFQ62509.1| ATPase, AAA family [Pseudomonas fluorescens WH6]
          Length = 441

 Score =  162 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 73/328 (22%), Positives = 118/328 (35%), Gaps = 48/328 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + LR   L+E+ GQ    +  K   EA +    AL  ++F GPPG+GKTTLA+++A+
Sbjct: 12  PLAARLRSTNLDEYVGQEHLLARGKPLREALEQ--GALHSMIFWGPPGVGKTTLARLLAK 69

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLT-------NLEDRDVLFIDEIHRLSIIVEEILYPAM 129
               +F + S  V+A   ++   +            R +LF+DE+HR +   ++   P +
Sbjct: 70  VSDAHFETVSA-VLAGVKEIRQAVEVAKQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYV 128

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ED  L  +    E PS       LSR  +    +        L  R              
Sbjct: 129 EDGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAAMQKLLHR-------------- 174

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
                 +G     L+V++E    +   + G  R    LL    D AE             
Sbjct: 175 -ALSEDKGLGKRQLSVSEEGFKILLTAADGDGRRFLNLLENASDLAEDGG---------- 223

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
                    ++G D L         R   GG    + ISA     R +  D    +  + 
Sbjct: 224 ---------EIGVDLLQSLLGDTRRRFDKGGEAFYDQISALHKSVRGSNPDGALYWFARM 274

Query: 308 GFIQRTP--RGRLLMPIAWQHLGIDIPH 333
                 P    R ++ +A + +G   P 
Sbjct: 275 IDGGCDPLYLARRVVRMASEDIGNADPR 302


>gi|91789641|ref|YP_550593.1| recombination factor protein RarA [Polaromonas sp. JS666]
 gi|91698866|gb|ABE45695.1| Recombination protein MgsA [Polaromonas sp. JS666]
          Length = 427

 Score =  162 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 72/331 (21%), Positives = 120/331 (36%), Gaps = 54/331 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACS---NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
                LRP++L E  GQ         L++  E+ +         +  GPPG+GKTTLA++
Sbjct: 4   PLAERLRPKSLGEVIGQQHLLGEGMPLRIAFESGQ-----PHSCILWGPPGVGKTTLARL 58

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILY 126
           +A     +F + S  V+    D+   +            R ++F+DE+HR +   ++   
Sbjct: 59  MASSFDAHFITISA-VLGGVKDIREAVEQASIWQGQGGRRTIVFVDEVHRFNKSQQDAFL 117

Query: 127 PAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           P +E      +    E PS       LSR  +         +  PL +            
Sbjct: 118 PHVESGLFTFIGATTENPSFEVNSALLSRAVV--------YVLQPLVE------------ 157

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
             DLK IV +  +   L   +  A     R         R L    +   VA        
Sbjct: 158 -ADLKRIVVKVLEERALPAIESIADAAVDRLVAYADGDARRLLNTLESLGVAARSEKITV 216

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           + DA LL++  ++             + R   GG    +TISA     R +  D    + 
Sbjct: 217 VTDAWLLKVLGER-------------LRRYDKGGEQFYDTISALHKSVRGSDPDAALYWF 263

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           ++       PR   R L+ +A + +G+  P 
Sbjct: 264 MRMLDGGAEPRYMARRLIRMASEDIGLADPR 294


>gi|167854588|ref|ZP_02477369.1| hypothetical protein HPS_02389 [Haemophilus parasuis 29755]
 gi|219872223|ref|YP_002476598.1| recombination factor protein RarA [Haemophilus parasuis SH0165]
 gi|167854343|gb|EDS25576.1| hypothetical protein HPS_02389 [Haemophilus parasuis 29755]
 gi|219692427|gb|ACL33650.1| recombination factor protein RarA [Haemophilus parasuis SH0165]
          Length = 447

 Score =  162 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 81/326 (24%), Positives = 124/326 (38%), Gaps = 41/326 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RPRTL E+ GQ       K    A +A       ++F GPPG GKTTLA+++A 
Sbjct: 14  PLSARMRPRTLAEYVGQSHLIGEGKPLRRAIEAGHS--HSMIFWGPPGTGKTTLAEIIAN 71

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
           EL       S        I +A + A L      R +LF+DE+HR +   ++   P +ED
Sbjct: 72  ELDAEVERLSAVTSGIKEIREAIEKAKLNRQSGRRTLLFVDEVHRFNKSQQDAFLPHIED 131

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             +  +    E PS       LSR  +         +  PLQ    + I      +++  
Sbjct: 132 GTIIFIGATTENPSFELNNALLSRARI--------YILKPLQAVDILKI------LQNAI 177

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
              +RG     L + D+    +A    G  R +   L  + D AE         ++ D A
Sbjct: 178 ADKERGLGNEKLIIQDDVLQLLADYVNGDGRFSLNCLELMCDMAEQLPQG----KLLDKA 233

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           LL   + +              AR   GG    + ISA     R +  D    +  +   
Sbjct: 234 LLTEVLGER------------QARFDKGGDRYYDLISALHKSIRGSSPDGALYWYARILT 281

Query: 310 IQRTPR--GRLLMPIAWQHLGIDIPH 333
               P    R L+ IA + +G   P 
Sbjct: 282 AGGDPLYVARRLLAIASEDIGNADPR 307


>gi|199599229|ref|ZP_03212631.1| recombination factor protein RarA [Lactobacillus rhamnosus HN001]
 gi|258507184|ref|YP_003169935.1| recombination factor protein RarA [Lactobacillus rhamnosus GG]
 gi|199589910|gb|EDY98014.1| recombination factor protein RarA [Lactobacillus rhamnosus HN001]
 gi|257147111|emb|CAR86084.1| AAA ATPase [Lactobacillus rhamnosus GG]
 gi|259648554|dbj|BAI40716.1| recombination factor protein RarA [Lactobacillus rhamnosus GG]
          Length = 448

 Score =  162 bits (409), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 84/348 (24%), Positives = 134/348 (38%), Gaps = 63/348 (18%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD+    + N        S +RP+TL+EF GQ       KV     +   + +  ++F G
Sbjct: 1   MDQSLFQNGNFQ---PLASRMRPQTLDEFVGQTHLLGKNKVLSNLIE--HDEISSMIFWG 55

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFIDEIH 115
           PPG+GKTTLA+++AR     F + S  V +   ++  ++        L  + ++F+DEIH
Sbjct: 56  PPGVGKTTLARIIARRTQAQFVTFSA-VTSGIKEIKQVMKEAEQNRELGQKTIVFVDEIH 114

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSR---FTLIAATT--RVGLLTN 168
           R +   ++   P +E   + L+    E PS       LSR   F L   T+   V LL  
Sbjct: 115 RFNKAQQDAFLPYVERGSIILIGATTENPSFEVNAALLSRTRVFVLHGLTSAELVDLLQR 174

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            L+D                     RG  L  + ++ +   +IA  + G  RIA   L  
Sbjct: 175 ALKDP--------------------RGYGLQQVKISKKLLAQIADFANGDARIALNTLEM 214

Query: 229 VRDFAEVAHAKTITREIADAAL---LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETI 285
               AE  H      +   A L     L  DK G +  +L                   I
Sbjct: 215 AVTNAETKHDVVSVTQADVAQLLTKKALLYDKNGEEHYNL-------------------I 255

Query: 286 SAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
           SA     R++  D    ++ +       P    R L+  A + +G+  
Sbjct: 256 SALHKSMRNSDVDAAIYWLARMLEAGEDPLYIARRLVRFASEDVGMAD 303


>gi|254423935|ref|ZP_05037653.1| ATPase, AAA family protein [Synechococcus sp. PCC 7335]
 gi|196191424|gb|EDX86388.1| ATPase, AAA family protein [Synechococcus sp. PCC 7335]
          Length = 742

 Score =  162 bits (409), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 71/335 (21%), Positives = 128/335 (38%), Gaps = 51/335 (15%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
            E    + +RPR+L EF GQ       ++   A +A  + L  ++F GPPG GKTTLA+V
Sbjct: 14  SEAPLAARMRPRSLIEFIGQDAIVGPGRLLRRAIEA--DQLSSLIFYGPPGTGKTTLAKV 71

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILY 126
           +A      F + +  V+    D+   +   +        R +LF+DE+HR +   ++ L 
Sbjct: 72  IANTTMAQFVAINA-VLGGVKDIRFAIEQAQTHRGQFGRRTILFVDEVHRFNKAQQDALL 130

Query: 127 PAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           P +E+  + L+    E P     K  +SR  +             +              
Sbjct: 131 PWVENGTVILIGATTENPFFEVNKALVSRSRVFQLKPLNADDLEAI-------------- 176

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT--IT 242
           ++   +  +RG     + +  +A   +   + G  R     L    +           IT
Sbjct: 177 VQQALSDSERGYGKQDILIDTDALNHLVNVANGDARTVLNALELAVETTSSDRDGKLRIT 236

Query: 243 REIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
             +A+ ++ + A   DK G    D                   TISA +   R +  D  
Sbjct: 237 LAVAEDSVQQRAVLYDKEGDAHFD-------------------TISAFIKSVRGSDPDAA 277

Query: 301 EPYMIQQGFIQRTPRG--RLLMPIAWQHLGIDIPH 333
             ++ +  +    PR   R L+ +A + +G+  P+
Sbjct: 278 LYWLARMVYAGEDPRYIFRRLVILAGEDVGMADPN 312


>gi|161501800|ref|NP_761751.2| recombination factor protein RarA [Vibrio vulnificus CMCP6]
 gi|319999484|gb|AAO11278.2| ATPase, AAA family [Vibrio vulnificus CMCP6]
          Length = 449

 Score =  162 bits (409), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 72/327 (22%), Positives = 116/327 (35%), Gaps = 42/327 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP T+E++ GQ       K    A +A    +  ++  GPPG GKTTLA+V A 
Sbjct: 16  PLAARMRPETIEQYIGQQHILGPGKPLRRALEAGH--IHSMILWGPPGTGKTTLAEVAAN 73

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAME 130
                    S  V +   ++ A +           R +LF+DE+HR +   ++   P +E
Sbjct: 74  YANAEVERVSA-VTSGVKEIRAAIEKARENKMAGRRTILFVDEVHRFNKSQQDAFLPHIE 132

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           D  +  +    E PS       LSR  +   T+      +                +   
Sbjct: 133 DGTVTFIGATTENPSFELNNALLSRARVYKLTSLNKEEIS--------------LALNQA 178

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
               QRG   T     D     +A    G  R++   L  + D AE        +EI   
Sbjct: 179 INDKQRGLGNTPAHFADNVLDRLAELVNGDARMSLNYLELLYDMAEDNAQGE--KEITLK 236

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  +A +K             ++R    G +  + ISA     R +  D    +  +  
Sbjct: 237 LLAEVAGEK-------------VSRFDNKGDIWYDLISAVHKSIRGSNPDAALYWSARMI 283

Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIPH 333
                P    R L+ IA + +G   P 
Sbjct: 284 AAGCDPLYIARRLLAIASEDVGNADPR 310


>gi|153854634|ref|ZP_01995884.1| hypothetical protein DORLON_01879 [Dorea longicatena DSM 13814]
 gi|149752738|gb|EDM62669.1| hypothetical protein DORLON_01879 [Dorea longicatena DSM 13814]
          Length = 439

 Score =  162 bits (409), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 79/343 (23%), Positives = 127/343 (37%), Gaps = 44/343 (12%)

Query: 2   MDREGLL-SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD    +  +N+ +E    S LRP TLEE  GQ       K+   A KA  + L  V+F 
Sbjct: 1   MDLFDYMREQNMEKEAPLASRLRPTTLEEVVGQQHIIGKDKLLYRAIKA--DKLSSVIFY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDE 113
           GPPG GKTTLA+V+A      F   +    A   D+  ++   ++       + +LF+DE
Sbjct: 59  GPPGTGKTTLAKVIANTTSAEFTQINA-TTAGKKDMEEVINKAKEMQGMYRKKTILFVDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++ L P +ED  + L+    E P        LSR       + +  L    +
Sbjct: 118 IHRFNKGQQDYLLPFVEDGTIILIGATTENPYFEVNGALLSR-------SSIFELQPLAK 170

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
           +     I    Y+         +G       + ++A   +A  S G  R A   +     
Sbjct: 171 EDIKTLITRAVYDT-------VKGMGSYQAVIDEDALEFLADISGGDARSALNAVELGIL 223

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
             E +    I                   D         + +    G    +TISA +  
Sbjct: 224 TTERSADGKIRIT---------------LDVASECIQKRVVKYDKTGDNHYDTISAFIKS 268

Query: 292 PRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
            R +  D    Y+ +  +     +   R +M  A + +G   P
Sbjct: 269 MRGSDPDAAVYYLAKMLYAGEDIKFIARRIMICASEDVGNADP 311


>gi|293402112|ref|ZP_06646251.1| ATPase, AAA family [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304504|gb|EFE45754.1| ATPase, AAA family [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 447

 Score =  162 bits (409), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 76/343 (22%), Positives = 135/343 (39%), Gaps = 52/343 (15%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M++E L  +++   D   S LRP++LE++ GQ       KV     +   + +  ++F G
Sbjct: 10  MEQESLFYQDLQ--DPLASRLRPQSLEDYVGQKHLIGKGKVLWNLIEK--DQVTSMIFWG 65

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIH 115
           PPG+GKTTLA+++A +    F   S  V +   ++  ++           R +LF+DEIH
Sbjct: 66  PPGVGKTTLARIIAHKTQSRFIDFSA-VTSGIREIKQVMKEASDARAFGKRTILFVDEIH 124

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P +E   + L+    E PS       LSR  +       GL T+ L + 
Sbjct: 125 RFNKAQQDAFLPYVEKGSIILIGATTENPSFEINSALLSRCKVFVLK---GLETSDLVEL 181

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
               +              ++G     + + D     IA  + G  R+A   L  V   A
Sbjct: 182 LQHALAD------------EKGFGTLNVQMEDSMLDMIAQFANGDARVALNTLEMVVLNA 229

Query: 234 EVAHAKT-ITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
           E       +T+E  +  + + +   DK G +  +L                   ISA   
Sbjct: 230 EKTDEGYLVTKETLEQCIHQKSLLYDKKGEEHYNL-------------------ISALHK 270

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
             R++       ++ +       P    R L+  A + +G+  
Sbjct: 271 SMRNSDVQAAIYWLARMLEAGEDPLYVARRLVRFASEDVGMAD 313


>gi|261492454|ref|ZP_05989010.1| putative recombination ATPase [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261311913|gb|EEY13060.1| putative recombination ATPase [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 445

 Score =  162 bits (409), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 74/334 (22%), Positives = 121/334 (36%), Gaps = 36/334 (10%)

Query: 8   LSRNVSQE-DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           LS + S++     + +RPR L E+ GQ       K    A +A       ++F GPPG G
Sbjct: 4   LSFDFSEDFRPLAAKMRPRNLAEYVGQSHLIGEGKPLRRAIEAGHS--HSMIFWGPPGTG 61

Query: 67  KTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           KTTLA+++A  L       S        I +A + A L      R +LF+DE+HR +   
Sbjct: 62  KTTLAEIIAHHLDAEVERISAVTSGVKEIREAIEQAKLNRQAGRRTLLFVDEVHRFNKSQ 121

Query: 122 EEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           ++   P +ED  +  +    E PS       LSR  +         +  PLQ    + I 
Sbjct: 122 QDAFLPHIEDGTIIFIGATTENPSFELNNALLSRARI--------YILKPLQAVEILKI- 172

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
                ++      +RG     L + D+    +A    G  R A   L  + D A+ +   
Sbjct: 173 -----LQMAIADTERGLGNETLVLEDDVLALLADYVNGDARFALNCLELMVDMAQDSAKG 227

Query: 240 TITREIADA---ALLRLAIDKMGFDQLDL---RYLTMIARNFGGGPVGIETISAGLSEPR 293
            +  +          +   DK G    DL    + ++   +  G       I     +P 
Sbjct: 228 KVLNKSLLTEVLGERQARFDKGGDRYYDLISALHKSIRGSSADGALYWYARILTAGGDPL 287

Query: 294 DAIEDLIEPYM--IQQGFIQRTPRGRLLMPIAWQ 325
                +    +    +      PR   +   AW 
Sbjct: 288 ----YVARRLLAIASEDIGNADPRAMQIAIAAWD 317


>gi|312795386|ref|YP_004028308.1| ATPase AAA [Burkholderia rhizoxinica HKI 454]
 gi|312167161|emb|CBW74164.1| ATPase, AAA family [Burkholderia rhizoxinica HKI 454]
          Length = 438

 Score =  162 bits (409), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 71/328 (21%), Positives = 117/328 (35%), Gaps = 51/328 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP+T++E  GQ       K    A ++       ++  GPPG+GKTTLA+++A 
Sbjct: 10  PLAERLRPKTIDEVIGQRHLLGENKPLRVAFESGE--PHSMILWGPPGVGKTTLARLMAA 67

Query: 77  ELGVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
                F + S  +     I +A DLA        + ++F+DE+HR +   ++   P +E 
Sbjct: 68  AFHAEFIALSAVLSGVKDIREAVDLAQAHRARGRQTLVFVDEVHRFNKSQQDAFLPHVES 127

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
                +    E PS       LSR  +    +        L                   
Sbjct: 128 GLFVFVGATTENPSFEVNSALLSRAAVYVLKSLDDHEQRAL------------------- 168

Query: 190 TIVQRGAKLT--GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
             ++R       GL +TD A   +   + G  R     +  V   A  A   +I   +  
Sbjct: 169 --LERAFAELGGGLTITDSARDALIGSADGDGRKLLNNVEIVARAAYRAKTTSIDDTLLG 226

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           AAL                    + R   GG    + ISA     R +  D    ++ + 
Sbjct: 227 AALA-----------------DNLRRFDKGGDAFYDQISALHKSVRGSHPDGALYWLCRM 269

Query: 308 GFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                 PR   R ++ +AW+ +G+  P 
Sbjct: 270 LDGGADPRYLARRIVRMAWEDIGLADPR 297


>gi|229543042|ref|ZP_04432102.1| AAA ATPase central domain protein [Bacillus coagulans 36D1]
 gi|229327462|gb|EEN93137.1| AAA ATPase central domain protein [Bacillus coagulans 36D1]
          Length = 442

 Score =  162 bits (409), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 77/343 (22%), Positives = 132/343 (38%), Gaps = 50/343 (14%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M +  L   +  Q     + +RP+ L+EF GQ       KV  E  +   + L  ++F G
Sbjct: 1   MRQTSLFENDNDQNRPLATRVRPKNLDEFVGQKHLIGKGKVLREMIE--HDRLSSMIFWG 58

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIH 115
           PPG+GKTTLA+++A +    F + S  V +   D+  ++   E+R       +LF+DEIH
Sbjct: 59  PPGVGKTTLAKIIANQTQSEFINFSA-VTSGIKDIRNVMKEAEERRQLGEKTILFLDEIH 117

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P +E+  + L+    E PS       LSR       T+V +L       
Sbjct: 118 RFNKAQQDAFLPYVENGSIILIGATTENPSFEVNSALLSR-------TKVFVLHKLTSSE 170

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR-VRDF 232
               ++               G  L  + + D+    IA  S G  R A   L   V + 
Sbjct: 171 IVELLKQAIVNPH--------GYGLQKIEIEDQTLLAIAEFSDGDARTALNTLEMAVLNG 222

Query: 233 AEVAHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
            +      I +E     + R +   DK G +  ++                   ISA   
Sbjct: 223 HKQEDTIIIRKEDLSQMINRKSLLYDKNGEEHYNI-------------------ISALHK 263

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
             R++  +    ++ +       P    R L+  A + +G+  
Sbjct: 264 SMRNSDVNAAVYWLSRMLEAGEDPLFIARRLVRFASEDIGLAD 306


>gi|302391510|ref|YP_003827330.1| recombination protein MgsA [Acetohalobium arabaticum DSM 5501]
 gi|302203587|gb|ADL12265.1| Recombination protein MgsA [Acetohalobium arabaticum DSM 5501]
          Length = 439

 Score =  162 bits (409), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 81/348 (23%), Positives = 134/348 (38%), Gaps = 52/348 (14%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD     S+      A ++  +RP TL++F GQ E     ++   A KA  + +  ++  
Sbjct: 1   MDLFTHSSQEELDASAPLADRMRPTTLDDFFGQEEIVGPDRLLRRAIKA--DRIQSLILY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDE 113
           GPPG GKTTLA ++A      F   +  V +   D+  ++   ++R        +LFIDE
Sbjct: 59  GPPGTGKTTLAMIIANTTSSEFERLNA-VTSGIKDIREIIKQAKERRRMYQTKTILFIDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++ L PA+E   + L+    E P        +SR       +RV  L    +
Sbjct: 118 IHRFNKSQQDALLPAVEKGIIILIGATTENPYFEVNSPLVSR-------SRVFELKPLTK 170

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
           D     +     + E        G     + VT EA   IA  + G  RIA   L     
Sbjct: 171 DNLKQILLKALDDTEQ-------GLGDYKVDVTQEALEHIAEMANGDARIALNALELAVL 223

Query: 232 FAEVAHAK--TITREIADAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISA 287
                      IT ++A+ ++ +     DK G +  D                   T+SA
Sbjct: 224 TTPENGTGIKEITLKVAEESIQQRSLDYDKTGDNHYD-------------------TVSA 264

Query: 288 GLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +   R +  D    ++ +       P+   R ++  A + +G   P 
Sbjct: 265 FIKSMRGSDPDATLYWLARMIEAGEDPKFIARRILVHAAEDVGNADPQ 312


>gi|254427548|ref|ZP_05041255.1| ATPase, AAA family, putative [Alcanivorax sp. DG881]
 gi|196193717|gb|EDX88676.1| ATPase, AAA family, putative [Alcanivorax sp. DG881]
          Length = 443

 Score =  162 bits (409), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 69/326 (21%), Positives = 118/326 (36%), Gaps = 55/326 (16%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            LRP  L+++ GQ       K   +A       L  ++  GPPG GKTTLA ++A+ +  
Sbjct: 19  RLRPAHLDDYVGQQHLVGEGKPLRQALDRGQ--LHSMILWGPPGTGKTTLALIMAQTVDA 76

Query: 81  NFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
            F + S  V++   D+ A +   +       R VLF+DE+HR +   ++   P +E+  +
Sbjct: 77  AFITLSA-VLSGVKDIRAAVEQAQIRLGQGRRTVLFVDEVHRFNKAQQDAFLPHVEEGTI 135

Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
             +    E PS       LSR  +                             +DL  ++
Sbjct: 136 TFIGATTENPSFELNNALLSRARVYRLRALA---------------------PDDLSGLL 174

Query: 193 QRGAK---LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            R  +   L G+ +  +A   +   + G  R    +L    D A+   A  I  E+    
Sbjct: 175 GRALQDPALNGMQLDADARELLLNYADGDARRLLNMLEVAADLAD-QDAPKIDAELMREV 233

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           L                    + R   GG +  + ISA     R +  D    +  +   
Sbjct: 234 LR-----------------DAVRRFDKGGDLFYDQISAMHKSVRGSDPDAALYWFARMLD 276

Query: 310 IQRTP--RGRLLMPIAWQHLGIDIPH 333
               P    R ++ +A + +G   P 
Sbjct: 277 GGCDPLYLARRVVRMASEDIGNADPR 302


>gi|89901945|ref|YP_524416.1| recombination factor protein RarA [Rhodoferax ferrireducens T118]
 gi|89346682|gb|ABD70885.1| Recombination protein MgsA [Rhodoferax ferrireducens T118]
          Length = 435

 Score =  162 bits (409), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 72/331 (21%), Positives = 120/331 (36%), Gaps = 58/331 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
                LRPRTL E  GQ +       L++  E+ +         +  GPPG GKTT+A++
Sbjct: 14  PLAERLRPRTLLEVIGQQQLLGEGMALRIAFESGQ-----PHSCILWGPPGTGKTTIARL 68

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYP 127
           +A      F + S  V+    D+   +   +       R ++F+DE+HR +   ++    
Sbjct: 69  MADAFDAQFITISA-VLGGVKDIREAVEQAQVAQGQGRRTIVFVDEVHRFNKSQQDAFLA 127

Query: 128 AMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
            +E      +    E PS       LSR                          L     
Sbjct: 128 HVESGLFTFIGATTENPSFEVNSALLSR---------------------AAVYVLQPLAP 166

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEI-AMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +DL+ I+ R   L  L   ++ A E     + G  R     L  +     VA  +    E
Sbjct: 167 QDLEQIIARALALQALPAIEKIASERLVGFADGDARRLLNTLEMLS----VAATQERVSE 222

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           I D  L ++  ++             + R   GG    +TISA     R +  D    ++
Sbjct: 223 ITDPWLQKVLGER-------------MRRYDKGGEQFYDTISALHKSVRGSNPDAALYWL 269

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           ++       PR   R L+ +A + +G+  P 
Sbjct: 270 VRMLDGGAEPRYLARRLIRMASEDIGLADPR 300


>gi|121608726|ref|YP_996533.1| recombination factor protein RarA [Verminephrobacter eiseniae
           EF01-2]
 gi|121553366|gb|ABM57515.1| Recombination protein MgsA [Verminephrobacter eiseniae EF01-2]
          Length = 452

 Score =  162 bits (409), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 75/338 (22%), Positives = 122/338 (36%), Gaps = 54/338 (15%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           + +  Q       LRP TL    GQ            A +  +      +  GPPG+GKT
Sbjct: 7   TPSPGQHQPLAERLRPHTLGAVVGQQHVLGPGMPLRLAFE--SGRPHSCILWGPPGVGKT 64

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTN--------LEDRDVLFIDEIHRLSII 120
           T+A+++A      F S S  V+    D+ A +          ++ R ++F+DE+HR +  
Sbjct: 65  TIARLMADAFDAQFISISA-VLGGVKDIRAAVERAEAARDGLMQQRTIVFVDEVHRFNKS 123

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++   P +E      +    E PS       LSR T+                      
Sbjct: 124 QQDAFLPHVESGLFTFIGATTENPSFEVNSALLSRATVYVL------------------- 164

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEI-AMRSRGTPRIAGRLLRRVRDFAEVAH 237
                  +DL+ IV        L   ++AA E     + G  R     L  +   A    
Sbjct: 165 --QPLSAQDLQQIVALAQAQHALPAIEDAAVERLVAYADGDARRLLNTLETLAMAA---- 218

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
           A     EI DA LL++  ++             + R   GG    +TISA     R +  
Sbjct: 219 AGQRLAEITDAWLLKVLGER-------------LRRYDKGGEQFYDTISALHKSVRGSDP 265

Query: 298 DLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           D    ++++       PR   R L+ +A + +G+  P 
Sbjct: 266 DAALYWLVRMLDGGADPRYMARRLVRMATEDVGLADPR 303


>gi|312134908|ref|YP_004002246.1| AAA ATPase central domain-containing protein [Caldicellulosiruptor
           owensensis OL]
 gi|311774959|gb|ADQ04446.1| AAA ATPase central domain protein [Caldicellulosiruptor owensensis
           OL]
          Length = 441

 Score =  162 bits (409), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 82/347 (23%), Positives = 133/347 (38%), Gaps = 52/347 (14%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD    L     ++++ ++  LRP+ LEE  GQ    S  K      K   + L  ++  
Sbjct: 1   MDFFQYLGEKRLKKESPLAYKLRPKRLEEIVGQEHILSPGKPLYNLIK--NDKLTSIILY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDE 113
           GPPG GKTT+A V+A   G  F++ +   IA   D+  ++   +        + +LFIDE
Sbjct: 59  GPPGTGKTTIAHVIANATGKTFKTINA-TIAGVNDIKRIIEEAKIEFSQTGKKTILFIDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR + + ++ L P++E+  + L+    E P     K  +SR  +            PL+
Sbjct: 118 IHRFNKLQQDALLPSVEEGVIILIGATTENPFYEVNKALVSRSLVFELF--------PLK 169

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
           +   + I      IE   T  + G     + + D A   IA  S G  R+A  +L  V  
Sbjct: 170 EEDILKI------IERAITDKENGLGELNIQIDDNAKKFIAKLSGGDARVALNILEAVVY 223

Query: 232 FAEVAHAKTITREIADAALLRLA----IDKMGFDQLDLRYLTMIARNFGGGPVGIETISA 287
            +       I         L        D  G    D                   TISA
Sbjct: 224 SSSAQDDGKIFISQESVVNLSNRKTAIYDATGDMHYD-------------------TISA 264

Query: 288 GLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
            +   R +  D    Y+ +        +   R L+ +A + +G+  P
Sbjct: 265 FIKSVRGSDPDAALFYLAKMLDSGEDIKFIARRLIILAAEDVGLADP 311


>gi|294625024|ref|ZP_06703674.1| ATPase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122]
 gi|294666603|ref|ZP_06731842.1| ATPase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535]
 gi|292600699|gb|EFF44786.1| ATPase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122]
 gi|292603623|gb|EFF47035.1| ATPase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535]
          Length = 429

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 71/322 (22%), Positives = 120/322 (37%), Gaps = 45/322 (13%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRTL+E  GQ    +       A +  +  +  ++  GPPG GKTTLA ++A      
Sbjct: 1   MRPRTLDEMVGQKRLLAPDSALRRAVE--SGRVHSMILWGPPGCGKTTLALLLAHYADAE 58

Query: 82  FRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F++ S  V++   ++  +L           R VLF+DE+HR +   ++   P +E   + 
Sbjct: 59  FKAISA-VLSGLPEVRQVLAEAAQRFAGGRRTVLFVDEVHRFNKAQQDAFLPHIERGTIL 117

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
            +    E PS       LSR  +                  G+  +     ++      +
Sbjct: 118 FVGATTENPSFELNSALLSRCRVHVLE--------------GVSPQDIVEALQRALRDAE 163

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           RG     + V++ +  EIA  + G  R A  LL    + A          EI    LL++
Sbjct: 164 RGLGTETIQVSEASLLEIASAADGDVRRALTLLEIAAELAAGEGG-----EITPQTLLQV 218

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
             D+               R    G    + ISA     R +  D    ++ +       
Sbjct: 219 LADRT-------------RRFDKNGEQFYDQISALHKSVRSSNPDAALYWLTRMLDGGCD 265

Query: 314 P--RGRLLMPIAWQHLGIDIPH 333
           P    R L  +A + +G+  P 
Sbjct: 266 PAYLARRLTRMAIEDIGLADPR 287


>gi|125973135|ref|YP_001037045.1| recombination factor protein RarA [Clostridium thermocellum ATCC
           27405]
 gi|256003930|ref|ZP_05428916.1| AAA ATPase central domain protein [Clostridium thermocellum DSM
           2360]
 gi|281417327|ref|ZP_06248347.1| AAA ATPase central domain protein [Clostridium thermocellum JW20]
 gi|125713360|gb|ABN51852.1| Recombination protein MgsA [Clostridium thermocellum ATCC 27405]
 gi|255992058|gb|EEU02154.1| AAA ATPase central domain protein [Clostridium thermocellum DSM
           2360]
 gi|281408729|gb|EFB38987.1| AAA ATPase central domain protein [Clostridium thermocellum JW20]
 gi|316940639|gb|ADU74673.1| AAA ATPase central domain protein [Clostridium thermocellum DSM
           1313]
          Length = 432

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 81/334 (24%), Positives = 129/334 (38%), Gaps = 51/334 (15%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           +++     +RPRTLEEF GQ E     K+     KA  + +  ++  GPPG GKT+LA++
Sbjct: 4   KKEPLAYRMRPRTLEEFYGQEEIVGEGKLLNRMIKA--DRISSIILYGPPGTGKTSLARI 61

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLT-------NLEDRDVLFIDEIHRLSIIVEEILY 126
           +A     NF   +  V A   D+  +++       N + R VLFIDEIHR +   ++ L 
Sbjct: 62  IANSTKANFEKLNA-VTAGVADIKRIVSDTQNPILNPKGRTVLFIDEIHRFNKSQQDALL 120

Query: 127 PAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           P +ED  + L+    E P     K  +SR ++         +  PL       I  N   
Sbjct: 121 PYVEDGTIILVGATTENPFFEVNKALISRSSV--------FMLKPLGSDAIKKIIRNALT 172

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            +      +RG     + + ++A   +A    G  RIA   L      + V        +
Sbjct: 173 DK------ERGLGNMDIEIEEDALNFLADICDGDARIALNALELAVLTSPVGSDGKFHID 226

Query: 245 IA----DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I              DK G +  D                    ISA +   R +  D  
Sbjct: 227 IQLIEECIQKKAARYDKSGEEHYD-------------------NISAFIKSMRGSDPDAA 267

Query: 301 EPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIP 332
             Y+ +  +    P    R +M  A + +G+  P
Sbjct: 268 VFYLARALYAGEDPMFLARRIMICAAEDVGMANP 301


>gi|312143966|ref|YP_003995412.1| AAA ATPase central domain protein [Halanaerobium sp. 'sapolanicus']
 gi|311904617|gb|ADQ15058.1| AAA ATPase central domain protein [Halanaerobium sp. 'sapolanicus']
          Length = 443

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 74/336 (22%), Positives = 125/336 (37%), Gaps = 45/336 (13%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           S    ++      +RPR LEEF GQ +     K+   A KA  + L  ++F GPPG GKT
Sbjct: 7   SDQEKKDQPLAYRMRPRNLEEFFGQKDIVGENKLLSRAIKA--DRLRSLIFYGPPGTGKT 64

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIV 121
           +LAQV+A +    F   +  V +   D+  ++   +        + +LFIDEIHR +   
Sbjct: 65  SLAQVIANQTKAEFIKLNA-VTSGVKDIREVIKKAKSNRSLYNTKTILFIDEIHRFNKSQ 123

Query: 122 EEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           ++ L P++E+  L ++    E P        LSR  +                       
Sbjct: 124 QDALLPSVENGTLIMIGATTENPYFEVNSPLLSRSRIFRLEKLEA--------------- 168

Query: 180 LNFYEIEDLKTI-VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
              Y+I     I  +RG     + ++++    IA  + G  R+A   L            
Sbjct: 169 SQIYKILKKALINKERGLGKLEVNISEKDLRFIAELADGDARVALNTLELAVLTTPHDKN 228

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             I  +                D +  R L         G    + ISA +   R +  D
Sbjct: 229 GQINLDKEII-----------EDSMQKRIL----NYDNKGDNHYDVISAFIKSMRGSDPD 273

Query: 299 LIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
               ++ +       P+   R ++  A + +G+  P
Sbjct: 274 AAIYWLARMIVSGEDPKFIARRVVIHAAEDVGMADP 309


>gi|260776357|ref|ZP_05885252.1| ATPase AAA family [Vibrio coralliilyticus ATCC BAA-450]
 gi|260607580|gb|EEX33845.1| ATPase AAA family [Vibrio coralliilyticus ATCC BAA-450]
          Length = 428

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 69/322 (21%), Positives = 115/322 (35%), Gaps = 42/322 (13%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP TL+++ GQ       K    A +A    +  ++  GPPG GKTTLA+V A      
Sbjct: 1   MRPETLDQYIGQQHILGLGKPLRRALEAGH--IHSMILWGPPGTGKTTLAEVAANYANAE 58

Query: 82  FRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
               S  V +   D+ A +           R +LF+DE+HR +   ++   P +ED  + 
Sbjct: 59  VERVSA-VTSGVKDIRAAIDKARENKLTGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVT 117

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
            +    E PS       LSR  +   T+                       +E   +  +
Sbjct: 118 FIGATTENPSFELNNALLSRARVYKLTSLAQQDIR--------------LALEQAISDAE 163

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           RG         D     ++    G  R++   L  + D A+        ++I    L  +
Sbjct: 164 RGLGQFEAHFVDNVLDRLSELVNGDARMSLNYLELLYDMAQ--EDDKGVKQITLELLAEV 221

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
           A +K             ++R    G +  + ISA     R +  D    +  +       
Sbjct: 222 AGEK-------------VSRFDNKGDIWYDLISAVHKSIRGSNPDAALYWSARMIAAGCD 268

Query: 314 PR--GRLLMPIAWQHLGIDIPH 333
           P    R L+ IA + +G   P 
Sbjct: 269 PLYIARRLLAIASEDIGNADPR 290


>gi|227824827|ref|ZP_03989659.1| recombination factor protein rarA [Acidaminococcus sp. D21]
 gi|226905326|gb|EEH91244.1| recombination factor protein rarA [Acidaminococcus sp. D21]
          Length = 440

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 73/343 (21%), Positives = 121/343 (35%), Gaps = 52/343 (15%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M+ + L        +     LRP+TL+EF GQ       KV     +   + +  ++F G
Sbjct: 1   MEEDSLF--KTPHHEPLAERLRPKTLDEFQGQQHLLGKGKVLRNLIER--DQISSMIFWG 56

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALL------TNLEDRDVLFIDEIH 115
           PPG+GKTTLA+++A     +F + S  V +   ++ A++      T    R ++FIDEIH
Sbjct: 57  PPGVGKTTLAKIIAHTTKASFITFSA-VTSGIKEIRAVMQRADEQTRFGQRTIVFIDEIH 115

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P +E   + L+    E PS       LSR  +             L  R
Sbjct: 116 RFNRAQQDAFLPFVEKGSIILIGATTENPSFEVNGALLSRCKVFVLKELTTEDIMALLKR 175

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                               RG     + + D+    +A  + G  R A   L  V    
Sbjct: 176 ALTDS---------------RGLGDQHIHMDDDKLRIVAEFASGDARSALSTLEMVVLNG 220

Query: 234 EVAHAKTITREIADA---ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
           +         E       +      DK G +  +L                   ISA   
Sbjct: 221 DAREDGIYVTEETLKECTSQESFLYDKSGEEHYNL-------------------ISALHK 261

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
             R++  D    ++ +       P    R ++  A + +GI  
Sbjct: 262 SMRNSDPDAAVYWLARMLEAGEDPLYIARRVVRFASEDVGIAD 304


>gi|227533349|ref|ZP_03963398.1| recombination ATPase [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|227189020|gb|EEI69087.1| recombination ATPase [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
          Length = 448

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 83/348 (23%), Positives = 132/348 (37%), Gaps = 63/348 (18%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD+    + N        S +RP+TL+EF GQ       KV     +   + +  ++F G
Sbjct: 1   MDQSLFQNGNFQ---PLASRMRPQTLDEFVGQTHLLGKDKVLSNLIE--HDEISSMIFWG 55

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFIDEIH 115
           PPG+GKTTLA+++AR     F + S  V +   ++  ++        L  + ++F+DEIH
Sbjct: 56  PPGVGKTTLARIIARRTKAQFVTFSA-VTSGIKEIKQVMKEAEQNRELGQKTIVFVDEIH 114

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSR---FTLIAATT--RVGLLTN 168
           R +   ++   P +E   + L+    E PS       LSR   F L   T+   V LL  
Sbjct: 115 RFNKAQQDAFLPYVERGSIILIGATTENPSFEVNAALLSRTRVFVLHGLTSAELVDLLQR 174

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            L+D                     RG  L  + +  +   +IA  + G  RIA   L  
Sbjct: 175 ALKDP--------------------RGYGLQKVKIGKKLLAQIADFANGDARIALNTLEM 214

Query: 229 VRDFAEVAHAKTITREIADAAL---LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETI 285
               AE         +   A L     L  DK G +  +L                   I
Sbjct: 215 AVTNAETKGGVVTVTQADVAQLLTKKALLYDKNGEEHYNL-------------------I 255

Query: 286 SAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
           SA     R++  D    ++ +       P    R L+  A + +G+  
Sbjct: 256 SALHKSMRNSDVDAAIYWLARMLEAGEDPLYVARRLVRFASEDVGMAD 303


>gi|229525720|ref|ZP_04415125.1| ATPase AAA family [Vibrio cholerae bv. albensis VL426]
 gi|229339301|gb|EEO04318.1| ATPase AAA family [Vibrio cholerae bv. albensis VL426]
          Length = 449

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 66/342 (19%), Positives = 112/342 (32%), Gaps = 42/342 (12%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M    L            + +RP+T++++ GQ       K    A +A    +  ++  G
Sbjct: 1   MSNYSLDFSGDEDFRPLAARMRPQTVDQYIGQQHILGPGKPLRRALEAGH--IHSMILWG 58

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIH 115
           PPG GKTTLA+V A          S  V +   ++ A +           R +LF+DE+H
Sbjct: 59  PPGTGKTTLAEVAANYANAEVERVSA-VTSGVKEIRAAIEKARENKLSGRRTILFVDEVH 117

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P +ED  +  +    E PS       LSR  +   T+            
Sbjct: 118 RFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNALLSRARVYKLTSLNQQ-------- 169

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                      +       +RG         D     +A    G  R++   L  + D A
Sbjct: 170 ------EILQALHQAIADTERGLGKVAAVFADNVLDRLAELVNGDARMSLNYLELLYDMA 223

Query: 234 EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
                     ++   A +                   ++R    G +  + ISA     R
Sbjct: 224 REDDQGRKQIDLPLLAEVAGEK---------------VSRFDNKGDIWYDLISAVHKSIR 268

Query: 294 DAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +  D    +  +       P    R L+ IA + +G   P 
Sbjct: 269 GSDPDAALYWAARMISAGCDPLYIARRLLAIASEDVGNADPR 310


>gi|254361649|ref|ZP_04977787.1| possible recombination ATPase [Mannheimia haemolytica PHL213]
 gi|261496364|ref|ZP_05992758.1| putative recombination ATPase [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|153093167|gb|EDN74183.1| possible recombination ATPase [Mannheimia haemolytica PHL213]
 gi|261307949|gb|EEY09258.1| putative recombination ATPase [Mannheimia haemolytica serotype A2
           str. OVINE]
          Length = 445

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 73/334 (21%), Positives = 121/334 (36%), Gaps = 36/334 (10%)

Query: 8   LSRNVSQE-DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           LS + S++     + +RPR L E+ GQ       K    A +A       ++F GPPG G
Sbjct: 4   LSFDFSEDFRPLAAKMRPRNLAEYVGQSHLIGEGKPLRRAIEAGHS--HSMIFWGPPGTG 61

Query: 67  KTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           KTTLA+++A  L       S        I +  + A L      R +LF+DE+HR +   
Sbjct: 62  KTTLAEIIAHHLDAEVERISAVTSGVKEIREVIEQAKLNRQAGRRTLLFVDEVHRFNKSQ 121

Query: 122 EEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           ++   P +ED  +  +    E PS       LSR  +         +  PLQ    + I 
Sbjct: 122 QDAFLPHIEDGTIIFIGATTENPSFELNNALLSRARI--------YILKPLQAVEILKI- 172

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
                ++      +RG     L + D+    +A    G  R A   L  + D A+ +   
Sbjct: 173 -----LQMAIADTERGLGNETLVLEDDVLALLADYVNGDARFALNCLELMVDMAQDSAKG 227

Query: 240 TITREIADA---ALLRLAIDKMGFDQLDL---RYLTMIARNFGGGPVGIETISAGLSEPR 293
            +  +          +   DK G    DL    + ++   +  G       I     +P 
Sbjct: 228 KVLNKSLLTEVLGERQARFDKGGDRYYDLISALHKSIRGSSADGALYWYARILTAGGDPL 287

Query: 294 DAIEDLIEPYM--IQQGFIQRTPRGRLLMPIAWQ 325
                +    +    +      PR   +  +AW 
Sbjct: 288 ----YVARRLLAIASEDIGNADPRAMQIAIVAWD 317


>gi|118580657|ref|YP_901907.1| recombination factor protein RarA [Pelobacter propionicus DSM 2379]
 gi|118503367|gb|ABK99849.1| Recombination protein MgsA [Pelobacter propionicus DSM 2379]
          Length = 448

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 81/342 (23%), Positives = 134/342 (39%), Gaps = 61/342 (17%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           +   S        +RPRTL EFTGQ       ++     +   + L  ++F GPPG GKT
Sbjct: 18  TAAPSANAPLAERMRPRTLTEFTGQEHLVGEDRILRRMIET--DTLSSLIFWGPPGCGKT 75

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVE 122
           TLA V+ARE   +F   S  +++   ++  +    E       R +LF+DEIHR +   +
Sbjct: 76  TLAHVIARETRAHFIFFSA-ILSGIKEIREIFREAEGVASRGRRTILFVDEIHRFNKSQQ 134

Query: 123 EILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAAT-----TRVGLLTNPLQDRFG 175
           +   P +E   + ++    E PS   +   LSR  ++        T  GL+   L DR  
Sbjct: 135 DAFLPYVEKGVVTMIGATTENPSFEVIAPLLSRCRVLTLKQLEPSTIAGLIGQALADR-- 192

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
                            +RG    GL +++E    ++ ++ G  R+A   L      A +
Sbjct: 193 -----------------ERGLGELGLDISEEGLDFLSRQAGGDARVALNTLEVA---AGL 232

Query: 236 AHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
           A  + I+ E    AL + A   DK G +                       ISA +   R
Sbjct: 233 ARERLISLETVQEALQKKALLYDKRGEEHY-------------------NVISAFIKSMR 273

Query: 294 DAIEDLIEPYMIQQGFIQRTPRG--RLLMPIAWQHLGIDIPH 333
            +  D    ++ +       P    R ++ +A + +G   P 
Sbjct: 274 ASDPDAALYWLARMLEAGEDPVFILRRMIILASEDIGNADPR 315


>gi|331010747|gb|EGH90803.1| recombination factor protein RarA [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 440

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 79/338 (23%), Positives = 123/338 (36%), Gaps = 49/338 (14%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L SR    +    + LR   L+E+ GQ    ++ K   EA +    AL  ++F GPPG+G
Sbjct: 3   LFSREPIAQ-PLAARLRATNLDEYVGQEHVLAHGKPLREALEQ--GALHSMIFWGPPGVG 59

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLT-------NLEDRDVLFIDEIHRLSI 119
           KTTLA+++A+    +F + S  V+A   ++   +            R +LF+DE+HR + 
Sbjct: 60  KTTLARLLAKVSDAHFETVSA-VLAGVKEIRQAVEVAKQQAGQYGKRTILFVDEVHRFNK 118

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             ++   P +ED  L  +    E PS       LSR  +    +        L  R    
Sbjct: 119 SQQDAFLPYVEDGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVHRALTE 178

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                          +RG     L ++DE    +   + G  R    LL    D AE   
Sbjct: 179 ---------------ERGLGKRQLTLSDEGFTILMAAADGDGRRMLNLLENASDLAE--- 220

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
                 EI    L  L  D                R   GG    + ISA     R +  
Sbjct: 221 ---DGSEIDVELLQSLLGDSR-------------RRFDKGGEAFYDQISALHKSIRGSDP 264

Query: 298 DLIEPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
           D    +  +       P    R ++ +A + +G   P 
Sbjct: 265 DAALYWFARMIDGGCDPLYLARRVVRMASEDIGNADPR 302


>gi|153840138|ref|ZP_01992805.1| ATPase, AAA family [Vibrio parahaemolyticus AQ3810]
 gi|149746235|gb|EDM57329.1| ATPase, AAA family [Vibrio parahaemolyticus AQ3810]
          Length = 423

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 74/327 (22%), Positives = 121/327 (37%), Gaps = 42/327 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP+T+ ++ GQ       K    A +A    +  ++  GPPG GKTTLA+V A 
Sbjct: 16  PLAARMRPQTIGQYIGQQHILGPGKPLRRALEAGH--VHSMILWGPPGTGKTTLAEVAAN 73

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAME 130
                    S  V +   ++ A +           R +LF+DE+HR +   ++   P +E
Sbjct: 74  YANAEVERVSA-VTSGVKEIRAAIEKARENKMAGRRTILFVDEVHRFNKSQQDAFLPHIE 132

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           D  +  +    E PS       LSR        RV  LT+  ++   + +     + E  
Sbjct: 133 DGTVTFIGATTENPSFELNNALLSR-------ARVYKLTSLDKEEISLALNQAINDKE-- 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
                RG   T     D     +A    G  R++   L  + D AE        +EI   
Sbjct: 184 -----RGLGDTPANFADNVLDRLAELVNGDARMSLNYLELLYDMAEDNAQGE--KEITLK 236

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  +A +K             ++R    G +  + ISA     R +  D    +  +  
Sbjct: 237 LLAEVAGEK-------------VSRFDNKGDIWYDLISAVHKSIRGSNPDAALYWAARMI 283

Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIPH 333
                P    R L+ IA + +G   P 
Sbjct: 284 AAGCDPLYIARRLLAIASEDVGNADPR 310


>gi|212635390|ref|YP_002311915.1| recombination factor protein RarA [Shewanella piezotolerans WP3]
 gi|212556874|gb|ACJ29328.1| AAA ATPase, central region [Shewanella piezotolerans WP3]
          Length = 443

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 73/328 (22%), Positives = 120/328 (36%), Gaps = 47/328 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP TL ++ GQ       +   +A +A       ++F GPPG GKTTLA++VA 
Sbjct: 14  PLAARMRPETLSQYIGQQHLLGEGQPLRQALEAGRA--HSMMFWGPPGTGKTTLAELVAS 71

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAM 129
               +    S  V +   ++ + + + +        R +LF+DE+HR +   ++   P +
Sbjct: 72  YANAHVERISA-VTSGVKEIRSAIEHAKSVAQSRGQRTLLFVDEVHRFNKSQQDAFLPFI 130

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ED  +  +    E PS       LSR        RV L+     +      +    + E 
Sbjct: 131 EDGTVIFIGATTENPSFEINNALLSR-------ARVYLIKQLTIEEICQITQQALLDEE- 182

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
                 RG     L +  + A ++A    G  R A  L+  + D  +     T    +  
Sbjct: 183 ------RGLGKRKLILPPDVAIKLAKVCDGDARKALNLIELISDMLKDGEVFTEEMIVQV 236

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           A       DK G    DL                   ISA     R +  D    +  + 
Sbjct: 237 AGQQLAGFDKNGDQYYDL-------------------ISAVHKSIRGSDPDAALYWYCRM 277

Query: 308 GFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                 P   GR L+ IA + +G   P+
Sbjct: 278 LEGGCDPLYIGRRLLAIASEDIGNADPN 305


>gi|260589707|ref|ZP_05855620.1| replication-associated recombination protein A [Blautia hansenii
           DSM 20583]
 gi|331083138|ref|ZP_08332255.1| hypothetical protein HMPREF0992_01179 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260539947|gb|EEX20516.1| replication-associated recombination protein A [Blautia hansenii
           DSM 20583]
 gi|330405140|gb|EGG84677.1| hypothetical protein HMPREF0992_01179 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 439

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 81/347 (23%), Positives = 130/347 (37%), Gaps = 52/347 (14%)

Query: 2   MDREGLL-SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD    +  + +  E    S +RP TLEE  GQ       K+   A KA  + L  V+F 
Sbjct: 1   MDLFDYMKEQTLENESPLASRMRPVTLEEVAGQEHIIGKDKLLYRAIKA--DKLGSVIFY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDE 113
           GPPG GKTTLA+V+A      F+  +  V A   D+  ++   +        + +LF+DE
Sbjct: 59  GPPGTGKTTLAKVIANTTSARFKQINATV-AGKKDMEEVVKEAQQHLGMYGKKTILFVDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++ L P +ED  L L+    E P        LSR  +              +
Sbjct: 118 IHRFNKGQQDYLLPFVEDGTLILIGATTENPYFEVNSALLSRSIVFELKPLEK------E 171

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
           D   I        +E   +  +RG       + ++A   +A  + G  R A   L     
Sbjct: 172 DICKI--------LERAVSDCERGMGSYHAVLHEDAKSFLADIAGGDARAALNALELGIL 223

Query: 232 FAEVAHAKTITREIADAAL----LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISA 287
             + +    I  ++  A+       +  DK G +  D                   T SA
Sbjct: 224 TTQKSEDGKIHIDLETASQCIQKRVVRYDKTGDNHYD-------------------TTSA 264

Query: 288 GLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
            +   R +  D    Y+ +  +     +   R +M  A + +G   P
Sbjct: 265 FIKSMRGSDPDAAVFYLAKMLYAGEDIKFIARRIMICAAEDVGNADP 311


>gi|90413225|ref|ZP_01221220.1| putative ATPase protein [Photobacterium profundum 3TCK]
 gi|90325777|gb|EAS42235.1| putative ATPase protein [Photobacterium profundum 3TCK]
          Length = 446

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 78/337 (23%), Positives = 123/337 (36%), Gaps = 43/337 (12%)

Query: 8   LSRNVSQE-DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
            S + S +     + +RPRT+EE+ GQ       K    A +A    L  ++  GPPG G
Sbjct: 4   FSLDFSSDFRPLAARMRPRTVEEYIGQQHILGEGKPLRRALEAGH--LHSMILWGPPGTG 61

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDL------AALLTNLEDRDVLFIDEIHRLSII 120
           KTTLA+V A          S  V +   D+      A        R +LF+DE+HR +  
Sbjct: 62  KTTLAEVAANYANAEVERVSA-VTSGVKDIRIAIDKARENKMAGRRTILFVDEVHRFNKS 120

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++   P +ED  +  +    E PS       LSR  +    +   +    + D      
Sbjct: 121 QQDAFLPHIEDGTVTFIGATTENPSFELNNALLSRARVYKLKSLETVEVLAVVD------ 174

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
                          RG   T L   D+    ++    G  R++   L ++ D AE   A
Sbjct: 175 --------QALKDSSRGISDTNLEFVDDVKERLSELVCGDARMSLNYLEQLIDMAEENKA 226

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
               ++I    L  +A +K+G             R    G +  + ISA     R +  D
Sbjct: 227 GI--KQITLELLAEVAGEKIG-------------RFDNKGDLWYDMISAVHKSIRGSNPD 271

Query: 299 LIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
               +  +       P    R L+ IA + +G   P 
Sbjct: 272 GALYWFARMLQAGCDPLYIVRRLLAIASEDIGNADPR 308


>gi|153802127|ref|ZP_01956713.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
 gi|124122320|gb|EAY41063.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
          Length = 449

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 66/342 (19%), Positives = 112/342 (32%), Gaps = 42/342 (12%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M    L            + +RP+T++++ GQ       K    A +A    +  ++  G
Sbjct: 1   MSNYSLDFSGDEDFRPLAARMRPQTVDQYIGQQHILGPGKPLRRALEAGH--IHSMILWG 58

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIH 115
           PPG GKTTLA+V A          S  V +   ++ A +           R +LF+DE+H
Sbjct: 59  PPGTGKTTLAEVAANYANAEVERVSA-VTSGVKEIRAAIEKARENKLSGRRTILFVDEVH 117

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P +ED  +  +    E PS       LSR  +   T+            
Sbjct: 118 RFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNALLSRARVYKLTSLNQQ-------- 169

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                      +       +RG         D     +A    G  R++   L  + D A
Sbjct: 170 ------EILQALHQAIADTERGLGKVAAVFADNVLDRLAELVNGDARMSLNYLELLYDMA 223

Query: 234 EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
                     ++   A +                   ++R    G +  + ISA     R
Sbjct: 224 REDDQGRKQIDLPLLAEVAGEK---------------VSRFDNKGDIWYDLISAVHKSIR 268

Query: 294 DAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +  D    +  +       P    R L+ IA + +G   P 
Sbjct: 269 GSDPDAALYWAARMISAGCDPLYIARRLLAIASEDVGNADPR 310


>gi|302872103|ref|YP_003840739.1| AAA ATPase central domain protein [Caldicellulosiruptor obsidiansis
           OB47]
 gi|302574962|gb|ADL42753.1| AAA ATPase central domain protein [Caldicellulosiruptor obsidiansis
           OB47]
          Length = 441

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 79/343 (23%), Positives = 140/343 (40%), Gaps = 44/343 (12%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD    L     ++++ ++  LRP+ LEE  GQ    S  K      K   + L  ++  
Sbjct: 1   MDFFQYLGEKRLKKESPLAYKLRPKRLEEIVGQEHILSPGKPLYNLIK--NDRLTSIILY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDE 113
           GPPG GKTT+A V+A   G  F++ +   IA   D+  ++   +        + +LFIDE
Sbjct: 59  GPPGTGKTTIAHVIANATGKTFKTINA-TIAGVNDIKKIIEEAKIEFSQTGKKTILFIDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR + + ++ L P++E+  + L+    E P     K  +SR  +            PL+
Sbjct: 118 IHRFNKLQQDALLPSVEEGIIILIGATTENPFYEVNKALVSRSLVFELF--------PLK 169

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
           +   + I      IE   +  + G     + + D+A   IA  S G  R+A  +L  V  
Sbjct: 170 EEDILKI------IERAISDKENGLGELNIQIDDDAKKLIAKLSGGDARVALNILEAVV- 222

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
           ++  A           + +   +   + +D                G +  +TISA +  
Sbjct: 223 YSSSAQDDGKIYISQKSVINLSSRKTVNYDAT--------------GDMHYDTISAFIKS 268

Query: 292 PRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
            R +  D    Y+ +        +   R L+ +A + +G+  P
Sbjct: 269 VRGSDPDAALFYLAKMLDSGEDIKFIARRLIILAAEDIGLADP 311


>gi|304384951|ref|ZP_07367297.1| replication-associated recombination protein A [Pediococcus
           acidilactici DSM 20284]
 gi|304329145|gb|EFL96365.1| replication-associated recombination protein A [Pediococcus
           acidilactici DSM 20284]
          Length = 439

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 72/342 (21%), Positives = 123/342 (35%), Gaps = 48/342 (14%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           R+G L  N        + +RP  L+EF GQ       K+  E  +   + L  ++F GPP
Sbjct: 2   RQGSLFENKFNNTPLANRVRPSNLDEFVGQEHLLGPGKILREIIE--NDQLSSMIFWGPP 59

Query: 64  GLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
           G+GKTTLAQ++A +    F + S        I K    A L   +  + ++F+DEIHR +
Sbjct: 60  GVGKTTLAQIIANKTNSKFLTFSAVDSSISKIKKIMQQAELDREIGQKTLVFVDEIHRFN 119

Query: 119 IIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
              ++   P +E   + L+    E PS       LSR  +         +  PL+    +
Sbjct: 120 KSQQDAFLPYVEKGSIILIGATTENPSFEVNSALLSRCKV--------FVLKPLEQGDLV 171

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
            +  N                   + + +     IA  + G  R A  +L       +  
Sbjct: 172 KLIQNVISNSQ-------AFDNQKIKIEENQINAIANFADGDARKALNILEMAVLNGKKQ 224

Query: 237 HAKTITREIADAAL---LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
                  +     L     +  DK G +  ++                   ISA     R
Sbjct: 225 GEAITITKDDLGQLISRKFVLYDKNGEEHYNI-------------------ISALHKSMR 265

Query: 294 DAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           ++  D    ++ +       P    R L+  A + +G+  P+
Sbjct: 266 NSDVDAAIYWLSRMLEGGEDPLYIARRLVRFASEDVGLADPN 307


>gi|152977760|ref|YP_001343389.1| recombination factor protein RarA [Actinobacillus succinogenes
           130Z]
 gi|150839483|gb|ABR73454.1| AAA ATPase central domain protein [Actinobacillus succinogenes
           130Z]
          Length = 439

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 76/346 (21%), Positives = 124/346 (35%), Gaps = 52/346 (15%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M  +  L      +     + LRP  LEEF GQ       KV     +   + +  ++F 
Sbjct: 1   MSTQPSLF--ENPENQPLAARLRPERLEEFAGQPHLLGEGKVLRRLIE--NDQISSMIFW 56

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEI 114
           GPPG+GKTTLAQ++A      F   S  V +   D+ A++   E       + ++F+DEI
Sbjct: 57  GPPGVGKTTLAQIIANSTQAGFIEFSA-VTSGIKDIRAIMQQAEQNRRYGAKTIVFVDEI 115

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++   P +E   + L+    E PS       LSR  +         +  PL+ 
Sbjct: 116 HRFNKAQQDAFLPFVEKGSIVLIGATTENPSFEINGALLSRCKV--------FVLQPLET 167

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
              + +               +G     + +  +    +A  + G  R A   L  V   
Sbjct: 168 ADIVKLLQRALTAP-------KGFGHLRVNMQSDMLEVLANFANGDARSALSTLEMVVLN 220

Query: 233 AEVAHAK-TITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGL 289
            E      T+T E     L R     DK G +  +L                   ISA  
Sbjct: 221 GEHQGNAVTVTEETLSQCLSRKTLLYDKKGEEHYNL-------------------ISALH 261

Query: 290 SEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
              R++  D    ++ +       P    R +   A + +G+  P 
Sbjct: 262 KSMRNSDADAAVYWLARMLEAGEDPLYVARRITRFASEDVGLADPR 307


>gi|312622691|ref|YP_004024304.1| AAA ATPase central domain-containing protein [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203158|gb|ADQ46485.1| AAA ATPase central domain protein [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 441

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 82/347 (23%), Positives = 134/347 (38%), Gaps = 52/347 (14%)

Query: 2   MDREGLLS-RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD    LS + + +E      LRP+ LEE  GQ    S  K      K   + L  ++  
Sbjct: 1   MDFFQYLSGKRLKKESPLAYKLRPKRLEEIVGQEHILSPGKPLYNLIK--NDRLTSIILY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDE 113
           GPPG GKTT+A V+A   G  F++ +   IA   D+  ++   +        + +LFIDE
Sbjct: 59  GPPGTGKTTIAHVIANATGKTFKTINA-TIAGVNDIKKIIEEAKFEFTQTGKKTILFIDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR + + ++ L P++E+  + L+    E P     K  +SR  +            PL+
Sbjct: 118 IHRFNKLQQDALLPSVEEGVIILIGATTENPFYEVNKALVSRSLVFELF--------PLK 169

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
           +   + I      IE   +  + G     + + ++A   IA  S G  R+A  +L  V  
Sbjct: 170 EEDILKI------IERAISDKENGLGELNIQIEEDAKKLIARLSGGDARVALNILEAVVY 223

Query: 232 FAEVAHAKTITREIADAALLRLA----IDKMGFDQLDLRYLTMIARNFGGGPVGIETISA 287
            ++      I         L        D  G    D                   TISA
Sbjct: 224 SSQARDDGKIYISQEFVINLSNRKTALYDATGDMHYD-------------------TISA 264

Query: 288 GLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
            +   R +  D    Y+ +        +   R L+ +A + +G+  P
Sbjct: 265 FIKSVRGSDPDAALFYLAKMLDSGEDIKFIARRLIILAAEDIGLADP 311


>gi|330900604|gb|EGH32023.1| recombination factor protein RarA [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 440

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 80/338 (23%), Positives = 125/338 (36%), Gaps = 49/338 (14%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L SR    +    + LR   L+E+ GQ    ++ K   EA +    AL  ++F GPPG+G
Sbjct: 3   LFSREPIAQ-PLAARLRATNLDEYVGQEHVLAHGKPLREALEQ--GALHSMIFWGPPGVG 59

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLT-------NLEDRDVLFIDEIHRLSI 119
           KTTLA+++A+    +F + S  V+A   ++   +            R +LF+DE+HR + 
Sbjct: 60  KTTLARLLAKVSDAHFETVSA-VLAGVKEIRQAVEVARQQAGQYGKRTILFVDEVHRFNK 118

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             ++   P +ED  L  +    E PS       LSR  +    +        L +R    
Sbjct: 119 SQQDAFLPYVEDGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVNRALTE 178

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                          +RG     LA++DE    +   + G  R    LL    D AE   
Sbjct: 179 ---------------ERGLGKRQLALSDEGFAMLMSAADGDGRRMLNLLENASDLAE--- 220

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
                 EI    L  L  D                R   GG    + ISA     R +  
Sbjct: 221 ---DGSEIDVGLLQSLLGDSR-------------RRFDKGGEAFYDQISALHKSIRGSNP 264

Query: 298 DLIEPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
           D    +  +       P    R ++ +A + +G   P 
Sbjct: 265 DAALYWFARMIDGGCDPLYLARRVVRMASEDIGNADPR 302


>gi|326794638|ref|YP_004312458.1| ATPase AAA [Marinomonas mediterranea MMB-1]
 gi|326545402|gb|ADZ90622.1| AAA ATPase central domain protein [Marinomonas mediterranea MMB-1]
          Length = 446

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 78/343 (22%), Positives = 127/343 (37%), Gaps = 47/343 (13%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M        +  Q     + +RP +L ++ GQ       K   +  +++       +  G
Sbjct: 1   MKDLFFDESSEQQYQPLAARMRPMSLSDYFGQEHLVGEGKPLRKMIESQHG--HSFILWG 58

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEI 114
           PPG+GKTT AQ+ A+ +   F   S  V++   D+ A +   +          +LF+DE+
Sbjct: 59  PPGVGKTTFAQLFAKSMSAQFIELSA-VMSGVKDIRAAVEKAKQWRTVHNSSTLLFVDEV 117

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++   P +ED     +    E P+       LSR        RV  LTNP  D
Sbjct: 118 HRFNKSQQDAFLPFIEDGTFLFVGATTENPAFELNSALLSR-------ARVYRLTNPSVD 170

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
                +     + E       +G     + + DE    +A  + G  R +  LL  + DF
Sbjct: 171 VIKQVLLTALNDSE-------KGLGQLNICINDEQLEILARAADGDIRRSLNLLEILSDF 223

Query: 233 AEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEP 292
            E      +T EI ++ L                  + I R    G V  + ISA     
Sbjct: 224 IEP--DMPVTPEILESVLG-----------------SSIRRYDRNGDVFYDQISAFHKSV 264

Query: 293 RDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           R +  D    +M +       P    R L+ IA + +G   P 
Sbjct: 265 RGSSPDGALYWMARMLDGGCDPLYIARRLLAIASEDIGNADPR 307


>gi|167758834|ref|ZP_02430961.1| hypothetical protein CLOSCI_01177 [Clostridium scindens ATCC 35704]
 gi|167663574|gb|EDS07704.1| hypothetical protein CLOSCI_01177 [Clostridium scindens ATCC 35704]
          Length = 438

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 83/347 (23%), Positives = 135/347 (38%), Gaps = 52/347 (14%)

Query: 2   MDREGLL-SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD    +  +N+ +E    S LRP TLEE  GQ       K+   A KA  + L  ++F 
Sbjct: 1   MDLFDYVREKNLDKEAPLASRLRPSTLEEVVGQQHIIGKDKLLYRAIKA--DKLSSIIFY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDE 113
           GPPG GKTTLA+V+A      F   +  V A   D+  ++   ++       + +LF+DE
Sbjct: 59  GPPGTGKTTLAKVIANTTSAVFTQINATV-AGKKDMEEVVGRAKETLGMYQKKTILFVDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++ L P +ED  + L+    E P        +SR       + +  L    +
Sbjct: 118 IHRFNKSQQDYLLPFVEDGTIILIGATTENPYFEVNGALISR-------SSIFELHPLDK 170

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
           +     IR   Y++E       +G       + ++A   +A  S G  R A   +     
Sbjct: 171 EDIKTVIRRAVYDVE-------KGMGSYDAVIEEDALEFLADISGGDARNALNAVELGIL 223

Query: 232 FAEVAHAKTITREIADAA----LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISA 287
             E +    I   +  A+       +  DK G +  D                   TISA
Sbjct: 224 TTERSDDGKIHITLPVASECIQKRVVRYDKTGDNHYD-------------------TISA 264

Query: 288 GLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
            +   R +  D    Y+ +  +     +   R +M  A + +G   P
Sbjct: 265 FIKSMRGSDPDAAVYYLAKMLYAGEDIKFIARRIMICASEDVGNADP 311


>gi|222056545|ref|YP_002538907.1| ATPase AAA [Geobacter sp. FRC-32]
 gi|221565834|gb|ACM21806.1| AAA ATPase central domain protein [Geobacter sp. FRC-32]
          Length = 438

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 79/346 (22%), Positives = 138/346 (39%), Gaps = 53/346 (15%)

Query: 2   MDR-EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD  +   + + ++E      +RPRT+ E+ GQ +     K+     +  ++ L  ++F 
Sbjct: 1   MDLFDRRAAEDAAKEAPLAEKMRPRTIAEYVGQEQLLGEGKLLRRLIE--SDQLTSLIFW 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDE 113
           GPPG GKTTLA+V+A     +F   S  +++   ++  ++   E+       R +LF+DE
Sbjct: 59  GPPGSGKTTLARVIAGATSSHFIFFSA-ILSGIKEIREIVKEAEEVRKFQGRRTILFVDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++   P +E     ++    E PS   +   LSR  ++   T        + 
Sbjct: 118 IHRFNKSQQDAFLPYVEKGVFTIIGATTENPSFEVIAPLLSRCKVLVLNTLSEEELQKI- 176

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
                        I +  T  +RG     LA+TD+A   +A ++ G  R+A   L     
Sbjct: 177 -------------IRNALTDRERGLGNLDLAITDDALSYMAEQAGGDGRVALNTLETAAR 223

Query: 232 FAEVAHAKTITREIADAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGL 289
            AE     TIT E    A+ +     DK G +                       ISA +
Sbjct: 224 LAE---NGTITIENVREAVQKKPLLYDKGGEEHY-------------------NVISAFI 261

Query: 290 SEPRDAIEDLIEPYMIQQGFIQRTPRG--RLLMPIAWQHLGIDIPH 333
              R +  D    ++ +       P    R ++ +A + +G   P 
Sbjct: 262 KSMRGSDPDAAVYWLARLIEAGEDPLFILRRMVILASEDIGNADPR 307


>gi|72383277|ref|YP_292632.1| recombination factor protein RarA/unknown domain fusion protein
           [Prochlorococcus marinus str. NATL2A]
 gi|72003127|gb|AAZ58929.1| Recombination protein MgsA [Prochlorococcus marinus str. NATL2A]
          Length = 734

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 75/340 (22%), Positives = 132/340 (38%), Gaps = 47/340 (13%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           E L+  N    D     LRP+TL+EF GQ    +  ++   +  A  + + ++L  GPPG
Sbjct: 11  EQLIQNNAPLAD----RLRPQTLDEFVGQDHILAQGRLLRRSIVA--DKVGNLLLYGPPG 64

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRL 117
           +GKTTLA+++A    ++  S     +A   DL + + +          R +LFIDE+HR 
Sbjct: 65  VGKTTLARIIALNT-LSHFSVVNAALAGIKDLRSEIESAIDRLNKFGKRTILFIDEVHRF 123

Query: 118 SIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
           +   ++ L P +E+  L L+    E P     K  +SR  L    +      + L  R  
Sbjct: 124 NTAQQDALLPWVENGTLTLIGATTENPYFEVNKALVSRSRLFRLNSLNSKALHQLLQR-- 181

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
                            +RG  L  + +  EA   +     G  R+    L    +    
Sbjct: 182 ------------ALNDKKRGYGLKLINLASEAEDHLVDVCNGDARVLLNALELAVESTIA 229

Query: 236 AHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDA 295
               +I  ++  A        +    +  + Y          G    +TISA +   R +
Sbjct: 230 NQDTSINIDLKIA--------EDSIQERAVLY-------DKKGDAHFDTISAFIKSLRGS 274

Query: 296 IEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
             D    ++ +      +PR   R ++  A + +G+  P+
Sbjct: 275 DPDAALFWLARMLEAGESPRFIFRRMLIAAGEDIGLADPN 314


>gi|227892533|ref|ZP_04010338.1| recombination ATPase [Lactobacillus ultunensis DSM 16047]
 gi|227865654|gb|EEJ73075.1| recombination ATPase [Lactobacillus ultunensis DSM 16047]
          Length = 441

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 74/350 (21%), Positives = 132/350 (37%), Gaps = 63/350 (18%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M  E L S     E+  ++  +RP++L+EF GQ +     K+  E  +   + +  ++  
Sbjct: 1   MKEESLFSLANQDENTPLADRVRPQSLDEFVGQKDLIGKGKILRELIEK--DKVPSLILW 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEI 114
           GPPG GKTTLA+++A+    +F + S  V +   D+  ++   E      ++ ++FIDEI
Sbjct: 59  GPPGTGKTTLAEIIAKHTKAHFITFSA-VTSSIKDIRKIMEEAESNRQFGEKTIVFIDEI 117

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++   P +E   + L+    E PS       LSR                   
Sbjct: 118 HRFNKAQQDAFLPFVEQGSITLIGATTENPSFEVNSALLSR------------------- 158

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKL------TGLAVTDEAACEIAMRSRGTPRIAGRLL 226
                  L+    ED+  +++R  K         + ++DE    IA    G  R +   L
Sbjct: 159 --AKVFVLHSLSTEDIVLLLKRAIKNPNGFPGLNIKISDENLHLIAEFGNGDARSSLNTL 216

Query: 227 RRVRDFAEVAHAKTITREIADAAL---LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIE 283
                  + +    +  E     L     L  DK G +  +L                  
Sbjct: 217 EIAVLNGKKSGQNVVVDEQILKELMNTKSLRYDKKGEEHYNL------------------ 258

Query: 284 TISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
            ISA     R++  +    ++ +       P    R L+  A + +G+  
Sbjct: 259 -ISALHKSMRNSDVNAAVYWVNRMLDGGEDPLYIARRLVRFASEDVGLAD 307


>gi|310767170|gb|ADP12120.1| recombination factor protein RarA [Erwinia sp. Ejp617]
          Length = 447

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 79/342 (23%), Positives = 123/342 (35%), Gaps = 42/342 (12%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M +     SRN  Q     + +RPRTL E+ GQ    +  K    A +A    L  ++  
Sbjct: 1   MSNLSLDFSRNEFQ--PLAARMRPRTLAEYIGQQHLLAAGKPLPRAIEAGH--LHSMILW 56

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIH 115
           GPPG GKTTLA+++ R    +    S        I +A + A    +   R +LF+DE+H
Sbjct: 57  GPPGTGKTTLAEIIGRYGQADVERISAVTSGVKEIREAIERARQNRHAGRRTILFVDEVH 116

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P +ED  +  +    E PS       LSR  +    +        + D 
Sbjct: 117 RFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLTSEDIATVLD- 175

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                              +RG     + + +     IA    G  R A   L  + D A
Sbjct: 176 -------------QAMQDGERGYGNDNIVLPENTRNMIAQLVNGDARRALNTLEMMADMA 222

Query: 234 EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
           EV       RE+    L  ++ ++              AR    G    + ISA     R
Sbjct: 223 EVNGKGK--RELTPQLLNEVSGERS-------------ARFDNKGDRFYDLISALHKSVR 267

Query: 294 DAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +  D    +  +       P    R L+ IA + +G   P 
Sbjct: 268 GSAPDAALYWYARIITAGGDPLYVARRLLAIASEDVGNADPR 309


>gi|37679508|ref|NP_934117.1| recombination factor protein RarA [Vibrio vulnificus YJ016]
 gi|37198252|dbj|BAC94088.1| putative ATPase protein [Vibrio vulnificus YJ016]
          Length = 449

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 71/327 (21%), Positives = 115/327 (35%), Gaps = 42/327 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP T+E++ GQ       K    A +A    +  ++  GPPG GKTTLA+V A 
Sbjct: 16  PLAARMRPETIEQYIGQQHILGPGKPLRRALEAGH--IHSMILWGPPGTGKTTLAEVAAN 73

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAME 130
                    S  V +   ++ A +           R +LF+DE+HR +   ++   P +E
Sbjct: 74  YANAEVERVSA-VTSGVKEIRAAIEKARENKMAGRRTILFVDEVHRFNKSQQDAFLPHIE 132

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           D  +  +    E PS       LSR  +   T+      +                +   
Sbjct: 133 DGTVTFIGATTENPSFELNNALLSRARVYKLTSLNKEEIS--------------LALNQA 178

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
               QRG   T     D     +A    G  R++   L  + D AE        + I   
Sbjct: 179 INDKQRGLGNTPAHFADNVLDRLAELVNGDARMSLNYLELLYDMAEDNAQGE--KAITLK 236

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  +A +K             ++R    G +  + ISA     R +  D    +  +  
Sbjct: 237 LLAEVAGEK-------------VSRFDNKGDIWYDLISAVHKSIRGSNPDAALYWAARMI 283

Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIPH 333
                P    R L+ IA + +G   P 
Sbjct: 284 AAGCDPLYIARRLLAIASEDVGNADPR 310


>gi|28897881|ref|NP_797486.1| recombination factor protein RarA [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260364483|ref|ZP_05777108.1| recombination factor protein RarA [Vibrio parahaemolyticus K5030]
 gi|260877040|ref|ZP_05889395.1| recombination factor protein RarA [Vibrio parahaemolyticus AN-5034]
 gi|260898067|ref|ZP_05906563.1| recombination factor protein RarA [Vibrio parahaemolyticus
           Peru-466]
 gi|260902448|ref|ZP_05910843.1| recombination factor protein RarA [Vibrio parahaemolyticus AQ4037]
 gi|28806094|dbj|BAC59370.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308088962|gb|EFO38657.1| recombination factor protein RarA [Vibrio parahaemolyticus
           Peru-466]
 gi|308093687|gb|EFO43382.1| recombination factor protein RarA [Vibrio parahaemolyticus AN-5034]
 gi|308110636|gb|EFO48176.1| recombination factor protein RarA [Vibrio parahaemolyticus AQ4037]
 gi|308114616|gb|EFO52156.1| recombination factor protein RarA [Vibrio parahaemolyticus K5030]
          Length = 449

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 74/327 (22%), Positives = 121/327 (37%), Gaps = 42/327 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP+T+ ++ GQ       K    A +A    +  ++  GPPG GKTTLA+V A 
Sbjct: 16  PLAARMRPQTIGQYIGQQHILGPGKPLRRALEAGH--VHSMILWGPPGTGKTTLAEVAAN 73

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAME 130
                    S  V +   ++ A +           R +LF+DE+HR +   ++   P +E
Sbjct: 74  YANAEVERVSA-VTSGVKEIRAAIEKARENKMAGRRTILFVDEVHRFNKSQQDAFLPHIE 132

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           D  +  +    E PS       LSR        RV  LT+  ++   + +     + E  
Sbjct: 133 DGTVTFIGATTENPSFELNNALLSR-------ARVYKLTSLDKEEISLALNQAINDKE-- 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
                RG   T     D     +A    G  R++   L  + D AE        +EI   
Sbjct: 184 -----RGLGDTPANFADNVLDRLAELVNGDARMSLNYLELLYDMAEDNAQGE--KEITLK 236

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  +A +K             ++R    G +  + ISA     R +  D    +  +  
Sbjct: 237 LLAEVAGEK-------------VSRFDNKGDIWYDLISAVHKSIRGSNPDAALYWAARMI 283

Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIPH 333
                P    R L+ IA + +G   P 
Sbjct: 284 AAGCDPLYIARRLLAIASEDVGNADPR 310


>gi|114047507|ref|YP_738057.1| recombination factor protein RarA [Shewanella sp. MR-7]
 gi|113888949|gb|ABI43000.1| Recombination protein MgsA [Shewanella sp. MR-7]
          Length = 443

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 79/338 (23%), Positives = 123/338 (36%), Gaps = 48/338 (14%)

Query: 8   LSRNVSQE-DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           LS N + +     + +RPRT+ E+ GQ       +   +A +A       ++  GPPG G
Sbjct: 4   LSFNFAPDFRPLAARMRPRTIAEYIGQAHLLGEGQPLRQALEAGRA--HSMMLWGPPGTG 61

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSI 119
           KTTLA+++A     +    S  V +   D+ A +   +        R +LF+DE+HR + 
Sbjct: 62  KTTLAELIAHYSNAHVERISA-VTSGVKDIRAAIEQAQAVAQSRRQRTLLFVDEVHRFNK 120

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             ++   P +ED  +  +    E PS       LSR        RV L+    QD     
Sbjct: 121 SQQDAFLPFIEDGTVIFIGATTENPSFEINNALLSR-------ARVYLIKRLSQDEIVHI 173

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
           I     + E       RG     L +  +   ++A    G  R A  LL  + D      
Sbjct: 174 ITQALTDAE-------RGLGQRQLIMPTDVLNKLAQLCDGDARKALNLLELMSDMVADGG 226

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
           + T    +  A       DK G    DL                   ISA     R +  
Sbjct: 227 SFTTEMLVQVAGHQVAGFDKNGDQFYDL-------------------ISAVHKSIRGSAP 267

Query: 298 DLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           D    +  +       P    R L+ IA + +G   P+
Sbjct: 268 DAALYWFCRILEGGGDPLYVARRLLAIASEDVGNADPN 305


>gi|289625405|ref|ZP_06458359.1| recombination factor protein RarA [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|289649312|ref|ZP_06480655.1| recombination factor protein RarA [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|298487530|ref|ZP_07005572.1| Holliday junction DNA helicase RuvB [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298157914|gb|EFH98992.1| Holliday junction DNA helicase RuvB [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|320323768|gb|EFW79852.1| recombination factor protein RarA [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320327909|gb|EFW83914.1| recombination factor protein RarA [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330866858|gb|EGH01567.1| recombination factor protein RarA [Pseudomonas syringae pv. aesculi
           str. 0893_23]
 gi|330889679|gb|EGH22340.1| recombination factor protein RarA [Pseudomonas syringae pv. mori
           str. 301020]
 gi|330987921|gb|EGH86024.1| recombination factor protein RarA [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 440

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 79/338 (23%), Positives = 123/338 (36%), Gaps = 49/338 (14%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L SR    +    + LR   L+E+ GQ    ++ K   EA +    AL  ++F GPPG+G
Sbjct: 3   LFSREPIAQ-PLAARLRATNLDEYVGQEHVLAHGKPLREALEQ--GALHSMIFWGPPGVG 59

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLT-------NLEDRDVLFIDEIHRLSI 119
           KTTLA+++A+    +F + S  V+A   ++   +            R +LF+DE+HR + 
Sbjct: 60  KTTLARLLAKVSDAHFETVSA-VLAGVKEIRQAVEVAKQQAGQYGKRTILFVDEVHRFNK 118

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             ++   P +ED  L  +    E PS       LSR  +    +        L  R    
Sbjct: 119 SQQDAFLPYVEDGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVHRALTE 178

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                          +RG     L ++DE    +   + G  R    LL    D AE   
Sbjct: 179 ---------------ERGLGKRQLTLSDEGFTILMAAADGDGRRMLNLLENASDLAE--- 220

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
                 EI    L  L  D                R   GG    + ISA     R +  
Sbjct: 221 ---DGSEIDVELLQSLLGDSR-------------RRFDKGGEAFYDQISALHKSIRGSDP 264

Query: 298 DLIEPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
           D    +  +       P    R ++ +A + +G   P 
Sbjct: 265 DAALYWFARMIDGGCDPLYLARRVVRMASEDIGNADPR 302


>gi|262274499|ref|ZP_06052310.1| ATPase AAA family [Grimontia hollisae CIP 101886]
 gi|262221062|gb|EEY72376.1| ATPase AAA family [Grimontia hollisae CIP 101886]
          Length = 444

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 75/327 (22%), Positives = 120/327 (36%), Gaps = 42/327 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP  L+E+ GQ    +  K    A ++    L  ++  GPPG GKTTLA+V A 
Sbjct: 14  PLAARMRPTNLKEYIGQKHLLAEGKPLRRALESGQ--LHSMILWGPPGTGKTTLAEVAAG 71

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130
                    S  V +   D+   +   ++      R VLF+DE+HR +   ++   P +E
Sbjct: 72  YANAEIERVSA-VTSGVKDIRLAIDKAKENQMVGRRTVLFVDEVHRFNKSQQDAFLPHIE 130

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           D  +  +    E PS       LSR  +    +          DR  I        IE  
Sbjct: 131 DGTITFIGATTENPSFELNNALLSRARVYKLKSL---------DREDILDV-----IEQA 176

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
            +  +RG     L   +    ++A  + G  R+    L  + D AE        +++   
Sbjct: 177 LSDRERGLGNENLVFDEGVKDQLASFTSGDARMTLNYLELLSDMAEPDSDG---KKLITL 233

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           ALL     +             IAR    G +  + ISA     R +  D    +  +  
Sbjct: 234 ALLAEVAGEK------------IARFDNKGDLWYDLISAFHKSVRGSDPDAALYWYARII 281

Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIPH 333
                P    R L+ IA + +G   P 
Sbjct: 282 TAGGDPLYVARRLLAIASEDIGNADPR 308


>gi|328954253|ref|YP_004371587.1| AAA ATPase central domain protein [Desulfobacca acetoxidans DSM
           11109]
 gi|328454577|gb|AEB10406.1| AAA ATPase central domain protein [Desulfobacca acetoxidans DSM
           11109]
          Length = 433

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 80/336 (23%), Positives = 127/336 (37%), Gaps = 59/336 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP +LEEF GQ +     ++   A +A       ++F GPPG GKTTLAQ++A 
Sbjct: 9   PLAARMRPSSLEEFVGQEQIIGPGRLLRRAIEA-DRLFSSLIFWGPPGCGKTTLAQIIAG 67

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAME 130
               +F S S  V++   D+  ++         + R ++ IDEIHR +   ++ L P +E
Sbjct: 68  VTRSHFVSLSA-VLSGVKDIREVVAQAEKKRLQQQRTIVLIDEIHRFNKAQQDALLPHVE 126

Query: 131 DFQLDLM--VGEGPSARSVKINLSR-----FTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
              L L+    E P    +   LSR     F  +       LL   L+DR          
Sbjct: 127 AGTLILIGATTENPYFEVIAPLLSRARVFVFQPLTEEQIRLLLDRALRDR---------- 176

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA--EVAHAKTI 241
                    QRG      ++TD+A   +A  + G  R A   L         +      I
Sbjct: 177 ---------QRGLGTFPASLTDDAWRYLARMAGGDGRNALNALELAVLSTPPDAEGNIVI 227

Query: 242 TREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
             E A  ++       D+ G    D                   TISA +   R +  D 
Sbjct: 228 HLEEAQESMQARVLLYDRDGDAHYD-------------------TISAFIKSVRGSAVDA 268

Query: 300 IEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
              ++         P+   R L+ +A + +G+  P 
Sbjct: 269 ALYWLACMIQAGEDPKFIARRLLILASEDIGLADPE 304


>gi|197118824|ref|YP_002139251.1| recombination factor protein RarA [Geobacter bemidjiensis Bem]
 gi|197088184|gb|ACH39455.1| stalled replication fork rescue ATPase [Geobacter bemidjiensis Bem]
          Length = 434

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 79/342 (23%), Positives = 134/342 (39%), Gaps = 52/342 (15%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           E L + N  +       +RPR++ E+ GQ       K+     +  ++ L  ++F GPPG
Sbjct: 2   EDLFNGNREEFAPLAERMRPRSMAEYLGQGHLVGEGKMLRRLIE--SDRLTSLIFWGPPG 59

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRL 117
            GKTTLA+++A     +F   S  +++   ++  ++   ED       R +LF+DEIHR 
Sbjct: 60  SGKTTLARIIANATRSHFIFFSA-IMSGIKEIREVVKEAEDTLKYQGKRTILFVDEIHRF 118

Query: 118 SIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
           +   ++   P +E     ++    E PS   +   LSR  ++           PL D   
Sbjct: 119 NKSQQDAFLPHVERGTFTIIGATTENPSFEVIAPLLSRCKVLVL--------QPLSDEDL 170

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
           + I      +E+     +RG     L+ T EA   +A ++ G  R+A   L      A  
Sbjct: 171 LKI------LENALADRERGLGELELSATAEALAFMAEQAAGDARVALNTLETASRLA-- 222

Query: 236 AHAKTITREIADAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
            H   IT E A  A+ +     DK G +                       ISA +   R
Sbjct: 223 -HQGEITLESAREAVQKKPLLYDKGGEEHY-------------------NVISAFIKSMR 262

Query: 294 DAIEDLIEPYMIQQGFIQRTPRG--RLLMPIAWQHLGIDIPH 333
            +  D    ++ +       P    R ++  A + +G   P 
Sbjct: 263 GSDPDAALYWLARMLEAGEDPIFILRRMVIFASEDVGNADPR 304


>gi|89073399|ref|ZP_01159923.1| putative ATPase protein [Photobacterium sp. SKA34]
 gi|89050886|gb|EAR56360.1| putative ATPase protein [Photobacterium sp. SKA34]
          Length = 428

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 79/327 (24%), Positives = 124/327 (37%), Gaps = 52/327 (15%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRT+EE+ GQ       K    A +A    L  ++  GPPG GKTTLA+V A      
Sbjct: 1   MRPRTVEEYIGQQHILGQGKPLRRALEAGQ--LHSMILWGPPGTGKTTLAEVAAHYANAE 58

Query: 82  FRSTSGPVIAKAGDLAALL------TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
               S  V +   D+ A +           R +LF+DE+HR +   ++   P +ED  + 
Sbjct: 59  VERVSA-VTSGIKDIRAAIDKARDNKMAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVT 117

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
            +    E PS       LSR  +    +        L+D   + +      IE      +
Sbjct: 118 FIGATTENPSFELNNALLSRSRVYKLKS--------LEDDEILQV------IEQALMDKE 163

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           RG   T L   D+   ++A   RG  R++   L ++ D +E                   
Sbjct: 164 RGVTETNLHFADDIKDKLAEFVRGDARMSLNYLEQLIDMSEE------------------ 205

Query: 254 AIDKMGFDQLDLRYL-----TMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
             D+ G  Q+ +  L       +AR    G +  + ISA     R +  D    +  +  
Sbjct: 206 --DEKGIKQITVELLAEVTGEKVARFDNKGDLWYDMISAVHKSIRGSNPDGALYWFARML 263

Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIPH 333
                P    R L+ IA + +G   P 
Sbjct: 264 QAGCDPLYVARRLLAIASEDIGNADPR 290


>gi|54308357|ref|YP_129377.1| recombination factor protein RarA [Photobacterium profundum SS9]
 gi|46912785|emb|CAG19575.1| putative ATPase protein [Photobacterium profundum SS9]
          Length = 446

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 78/337 (23%), Positives = 121/337 (35%), Gaps = 43/337 (12%)

Query: 8   LSRNVSQE-DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
            S + S +     + +RPRT+EE+ GQ       K    A +A    L  ++  GPPG G
Sbjct: 4   FSLDFSSDFRPLAARMRPRTVEEYIGQQHILGVGKPLRRALEAGH--LHSMILWGPPGTG 61

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDL------AALLTNLEDRDVLFIDEIHRLSII 120
           KTTLA+V A          S  V +   D+      A        R +LF+DE+HR +  
Sbjct: 62  KTTLAEVAANYANAEVERVSA-VTSGVKDIRIAIDKARENKMAGRRTILFVDEVHRFNKS 120

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++   P +ED  +  +    E PS       LSR  +    +        +        
Sbjct: 121 QQDAFLPHIEDGTVTFIGATTENPSFELNNALLSRARVYKLKSLETAEVLAV-------- 172

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
                 +E       RG   T L   D+    ++    G  R++   L ++ D AE   A
Sbjct: 173 ------VEQALKDSSRGISDTNLEFVDDVKERLSELVCGDARMSLNYLEQLVDMAEENKA 226

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
                 I    L  +A +K+G             R    G +  + ISA     R +  D
Sbjct: 227 GIKY--ITLELLAEVAGEKIG-------------RFDNKGDLWYDMISAVHKSIRGSNPD 271

Query: 299 LIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
               +  +       P    R L+ IA + +G   P 
Sbjct: 272 GALYWFARMLQAGCDPLYIVRRLLAIASEDIGNADPR 308


>gi|283138944|gb|ADB12547.1| ATPase [uncultured bacterium 9F08]
          Length = 449

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 77/345 (22%), Positives = 122/345 (35%), Gaps = 46/345 (13%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M D  G      ++    ++  +RPRT  EF GQ       K   +A  +    L  ++F
Sbjct: 1   MSDLFGNPEAEQNETLRPLADRMRPRTPAEFFGQQHLLGEGKPLRQAIDSGN--LHSMIF 58

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDE 113
            GPPG GKTTLA+++A      F + S  V++   ++ A +             VLF+DE
Sbjct: 59  WGPPGTGKTTLARMIAGHGEAQFITISA-VLSGVKEIRAAVEQARQARQRGQATVLFVDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           +HR +   ++   P +ED     +    E PS       LSR  +    +        + 
Sbjct: 118 VHRFNKSQQDAFLPHIEDGTFTFIGATTENPSFELNNALLSRARVYVLKSLDSAEIETI- 176

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
                        ++   T  +RG     L + D     IA  + G  R A  LL    D
Sbjct: 177 -------------LQQALTDPERGLGRRPLVLADTLRRRIAEAADGDARRALNLLEIAAD 223

Query: 232 FAE-VAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
            AE     + I  E  +  L                    + R   GG    + ISA   
Sbjct: 224 LAEPGEGVEIIAEETLNEVLSGG-----------------VRRFDKGGEAFYDQISALHK 266

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
             R +  D    +  +       P    R ++ +A + +G   P 
Sbjct: 267 SVRGSDPDATLYWFARMIDGGVDPLYVARRVVRMASEDIGNADPR 311


>gi|282882872|ref|ZP_06291477.1| replication-associated recombination protein A [Peptoniphilus
           lacrimalis 315-B]
 gi|281297283|gb|EFA89774.1| replication-associated recombination protein A [Peptoniphilus
           lacrimalis 315-B]
          Length = 429

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 78/339 (23%), Positives = 132/339 (38%), Gaps = 50/339 (14%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           + +N++ +      LRP+ LEEF GQ       K      K  ++ ++ +LF GPPG+GK
Sbjct: 1   MEKNLNNKSPLADRLRPKNLEEFVGQDHIIGQGKFLSRLIK--SDRVNSLLFYGPPGVGK 58

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSII 120
           TTLA+++A     NF   S  V +   +L  +L   +D         ++FIDEIHR +  
Sbjct: 59  TTLAKIIANLTNKNFVELSA-VTSNIKELREVLNKAQDDFKFSNIETIVFIDEIHRFNKT 117

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++ L P +E   + L+    E P     K  LSR  ++  T       N L DR     
Sbjct: 118 QQDALLPYVERGIIILIGATTENPYFEVNKALLSRLQILNLTALENKDMNKLIDR----- 172

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR-RVRDFAEVAH 237
                      +   +G     + ++++A   +   S G  R     L   V    +V +
Sbjct: 173 ---------AISDKIKGFGNLKINLSEKAREFLIRNSSGDGRFLLNSLEIAVLSTDKVDN 223

Query: 238 AKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDA 295
              +T ++ + ++ R     D  G +  D                   TISA +   R  
Sbjct: 224 EVNLTLDVLENSMQRKKLLYDNGGNEHYD-------------------TISAFIKSLRGT 264

Query: 296 IEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
             D    Y+ +        +   R ++  A + +G   P
Sbjct: 265 DPDAALYYLAKMLESGEDIKFIARRMIIFASEDVGNANP 303


>gi|320156735|ref|YP_004189114.1| ATPase AAA family [Vibrio vulnificus MO6-24/O]
 gi|319932047|gb|ADV86911.1| ATPase AAA family [Vibrio vulnificus MO6-24/O]
          Length = 449

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 71/327 (21%), Positives = 115/327 (35%), Gaps = 42/327 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP T+E++ GQ       K    A +A    +  ++  GPPG GKTTLA+V A 
Sbjct: 16  PLAARMRPETIEQYIGQQHILGPGKPLRRALEAGH--IHSMILWGPPGTGKTTLAEVAAN 73

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAME 130
                    S  V +   ++ A +           R +LF+DE+HR +   ++   P +E
Sbjct: 74  YANAEVERVSA-VTSGVKEIRAAIEKARENKMAGRRTILFVDEVHRFNKSQQDAFLPHIE 132

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           D  +  +    E PS       LSR  +   T+      +                +   
Sbjct: 133 DGTVTFIGATTENPSFELNNALLSRARVYKLTSLNKEEIS--------------LALNQA 178

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
               QRG   T     D     +A    G  R++   L  + D AE        + I   
Sbjct: 179 INDKQRGLGNTPAHFADNVLDRLAELVNGDARMSLNYLELLYDMAEDNAQGE--KAITLK 236

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  +A +K             ++R    G +  + ISA     R +  D    +  +  
Sbjct: 237 LLAEVAGEK-------------VSRFDNKGDIWYDLISAVHKSIRGSNPDAALYWAARMI 283

Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIPH 333
                P    R L+ IA + +G   P 
Sbjct: 284 AAGCDPLYIARRLLAIASEDVGNADPR 310


>gi|71733913|ref|YP_275261.1| recombination factor protein RarA [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71554466|gb|AAZ33677.1| ATPase, AAA family [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 440

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 79/338 (23%), Positives = 123/338 (36%), Gaps = 49/338 (14%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L SR    +    + LR   L+E+ GQ    ++ K   EA +    AL  ++F GPPG+G
Sbjct: 3   LFSREPIAQ-PLAARLRATNLDEYVGQEHVLAHGKPLREALEQ--GALHSMIFWGPPGVG 59

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLT-------NLEDRDVLFIDEIHRLSI 119
           KTTLA+++A+    +F + S  V+A   ++   +            R +LF+DE+HR + 
Sbjct: 60  KTTLARLLAKVSDAHFETVSA-VLAGVKEIRQAVEVAKQQAGQYGKRTILFVDEVHRFNK 118

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             ++   P +ED  L  +    E PS       LSR  +    +        L  R    
Sbjct: 119 SQQDAFLPYVEDGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVHRALTE 178

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                          +RG     L ++DE    +   + G  R    LL    D AE   
Sbjct: 179 ---------------ERGLGKRQLTLSDEGFTILMAAADGDGRRMLNLLENASDLAE--- 220

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
                 EI    L  L  D                R   GG    + ISA     R +  
Sbjct: 221 ---DGSEIDVELLQSLLGDSR-------------RRFDKGGEAFYDQISALHKSIRGSDP 264

Query: 298 DLIEPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
           D    +  +       P    R ++ +A + +G   P 
Sbjct: 265 DAALYWFARMIDGGCDPLYLARRVVRMASEDIGNADPR 302


>gi|309799476|ref|ZP_07693707.1| holliday junction ATP-dependent DNA helicase RuvB [Streptococcus
           infantis SK1302]
 gi|308116890|gb|EFO54335.1| holliday junction ATP-dependent DNA helicase RuvB [Streptococcus
           infantis SK1302]
          Length = 155

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 70/155 (45%), Positives = 101/155 (65%)

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           + +Y  +DL  IV+R A +  + +T EAA E+A+RSRGTPRIA RLL+RVRDFA++    
Sbjct: 1   MEYYAHDDLTEIVERTADIFEMEITHEAAAELALRSRGTPRIANRLLKRVRDFAQIMGDG 60

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I   I D AL  L +D  G D +D + L  +   +GGGPVG+ T+S  ++E R+ +ED+
Sbjct: 61  LIDDVITDKALTMLDVDHEGLDYVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDM 120

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
            EPY+IQ+GFI RT  GR+    A++HLG +   +
Sbjct: 121 YEPYLIQKGFIMRTRSGRVATAKAYEHLGYEYIEK 155


>gi|254225502|ref|ZP_04919112.1| conserved hypothetical protein [Vibrio cholerae V51]
 gi|125621972|gb|EAZ50296.1| conserved hypothetical protein [Vibrio cholerae V51]
          Length = 449

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 67/342 (19%), Positives = 112/342 (32%), Gaps = 42/342 (12%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M    L            + +RP+T+E++ GQ       K    A +A    +  ++  G
Sbjct: 1   MSNYSLDFSGDEDFRPLAARMRPQTVEQYIGQQHILGPGKPLRRALEAGH--IHSMILWG 58

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIH 115
           PPG GKTTLA+V A          S  V +   ++ A +           R +LF+DE+H
Sbjct: 59  PPGTGKTTLAEVAANYANAEVERVSA-VTSGVKEIRAAIEKARENKLSGRRTILFVDEVH 117

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P +ED  +  +    E PS       LSR  +   T+            
Sbjct: 118 RFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNALLSRARVYKLTSLNQQ-------- 169

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                      +       +RG         D     +A    G  R++   L  + D A
Sbjct: 170 ------EILQALHQAIADTERGLGKVAAVFADNVLDRLAELVNGDARMSLNYLELLYDMA 223

Query: 234 EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
                     ++   A +                   ++R    G +  + ISA     R
Sbjct: 224 REDDQGRKQIDLPLLAEVAGEK---------------VSRFDNKGDIWYDLISAVHKSIR 268

Query: 294 DAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +  D    +  +       P    R L+ IA + +G   P 
Sbjct: 269 GSDPDAALYWAARMISAGCDPLYIARRLLAIASEDVGNADPR 310


>gi|121726259|ref|ZP_01679549.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|229515491|ref|ZP_04404950.1| ATPase AAA family [Vibrio cholerae TMA 21]
 gi|229529802|ref|ZP_04419192.1| ATPase AAA family [Vibrio cholerae 12129(1)]
 gi|121631205|gb|EAX63578.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|229333576|gb|EEN99062.1| ATPase AAA family [Vibrio cholerae 12129(1)]
 gi|229347260|gb|EEO12220.1| ATPase AAA family [Vibrio cholerae TMA 21]
 gi|327483813|gb|AEA78220.1| ATPase, AAA family [Vibrio cholerae LMA3894-4]
          Length = 449

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 67/342 (19%), Positives = 112/342 (32%), Gaps = 42/342 (12%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M    L            + +RP+T+E++ GQ       K    A +A    +  ++  G
Sbjct: 1   MSNYSLDFSGDEDFRPLAARMRPQTVEQYIGQQHILGPGKPLRRALEAGH--IHSMILWG 58

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIH 115
           PPG GKTTLA+V A          S  V +   ++ A +           R +LF+DE+H
Sbjct: 59  PPGTGKTTLAEVAANYANAEVERVSA-VTSGVKEIRAAIEKARENKLSGRRTILFVDEVH 117

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P +ED  +  +    E PS       LSR  +   T+            
Sbjct: 118 RFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNALLSRARVYKLTSLNQQ-------- 169

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                      +       +RG         D     +A    G  R++   L  + D A
Sbjct: 170 ------EILQALHQAIADTERGLGKVAAVFADNVLDRLAELVNGDARMSLNYLELLYDMA 223

Query: 234 EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
                     ++   A +                   ++R    G +  + ISA     R
Sbjct: 224 REDDQGRKQIDLPLLAEVAGEK---------------VSRFDNKGDIWYDLISAVHKSIR 268

Query: 294 DAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +  D    +  +       P    R L+ IA + +G   P 
Sbjct: 269 GSDPDAALYWAARMISAGCDPLYIARRLLAIASEDVGNADPR 310


>gi|254291532|ref|ZP_04962323.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
 gi|150422596|gb|EDN14552.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
          Length = 449

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 67/342 (19%), Positives = 112/342 (32%), Gaps = 42/342 (12%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M    L            + +RP+T+E++ GQ       K    A +A    +  ++  G
Sbjct: 1   MSNYSLDFSGDEDFRPLAARMRPQTVEQYIGQQHILGPGKPLRRALEAGH--IHSMILWG 58

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIH 115
           PPG GKTTLA+V A          S  V +   ++ A +           R +LF+DE+H
Sbjct: 59  PPGTGKTTLAEVAANYANAEVERVSA-VTSGVKEIRAAIEKARENKLSGRRTILFVDEVH 117

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P +ED  +  +    E PS       LSR  +   T+            
Sbjct: 118 RFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNALLSRARVYKLTSLNQQ-------- 169

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                      +       +RG         D     +A    G  R++   L  + D A
Sbjct: 170 ------EILQALHQAIADTERGLGKVAAVFADNVLDRLAELVNGDARMSLNYLELLYDMA 223

Query: 234 EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
                     ++   A +                   ++R    G +  + ISA     R
Sbjct: 224 REDDQGCKQIDLPLLAEVAGEK---------------VSRFDNKGDIWYDLISAVHKSIR 268

Query: 294 DAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +  D    +  +       P    R L+ IA + +G   P 
Sbjct: 269 GSDPDAALYWAARMISAGCDPLYIARRLLAIASEDVGNADPR 310


>gi|157375266|ref|YP_001473866.1| recombination factor protein RarA [Shewanella sediminis HAW-EB3]
 gi|157317640|gb|ABV36738.1| AAA ATPase, central domain protein [Shewanella sediminis HAW-EB3]
          Length = 443

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 76/327 (23%), Positives = 119/327 (36%), Gaps = 47/327 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP T+ ++ GQ       K   +A +A       ++F GPPG GKTTLA++VA 
Sbjct: 14  PLAARMRPETISQYIGQTHLLGEGKPLRKALEAGRA--HSMMFWGPPGTGKTTLAELVAN 71

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAM 129
               +    S  V +   ++   + + +        R +LF+DE+HR +   ++   P +
Sbjct: 72  YANAHVERISA-VTSGVKEIRTAIEHAKNVAESRGQRTLLFVDEVHRFNKSQQDAFLPFI 130

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ED  +  +    E PS       LSR        RV L+     D     +R    + E 
Sbjct: 131 EDGTVIFVGATTENPSFEINNALLSR-------ARVYLIKKLTNDEIVHIVRQALTDEE- 182

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
                 RG     L + D  A ++A  S G  R A  L+  + D      + +    I  
Sbjct: 183 ------RGLGKRKLLIPDNVALKLANVSEGDARKALNLIELMSDMLADGGSFSEEMIIEV 236

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           A       DK G    DL                   ISA     R +  D    +  + 
Sbjct: 237 AGQQLAGFDKNGDQFYDL-------------------ISAVHKSIRGSAPDAALYWFCRM 277

Query: 308 GFIQRTPR--GRLLMPIAWQHLGIDIP 332
                 P    R L+ IA + +G   P
Sbjct: 278 LEGGCDPLYIARRLLAIASEDIGNADP 304


>gi|330981392|gb|EGH79495.1| recombination factor protein RarA [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 440

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 79/338 (23%), Positives = 124/338 (36%), Gaps = 49/338 (14%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L SR    +    + LR   L+E+ GQ    ++ K   EA +    AL  ++F GPPG+G
Sbjct: 3   LFSREPIAQ-PLAARLRANNLDEYVGQEHVLAHGKPLREALEQ--GALHSMIFWGPPGVG 59

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLT-------NLEDRDVLFIDEIHRLSI 119
           KTTLA+++A+    +F + S  V+A   ++   +            R +LF+DE+HR + 
Sbjct: 60  KTTLAKLLAKVSDAHFETVSA-VLAGVKEIRQAVEVARQQAGQYGKRTILFVDEVHRFNK 118

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             ++   P +ED  L  +    E PS       LSR  +    +        L +R    
Sbjct: 119 SQQDAFLPYVEDGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVNRALTE 178

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                          +RG     LA++D     +   + G  R    LL    D AE   
Sbjct: 179 ---------------ERGLGKRQLALSDGGFAMLMSAADGDGRRMLNLLENASDLAE--- 220

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
                 EI    L  L  D                R   GG    + ISA     R +  
Sbjct: 221 ---DGSEIDVGLLQSLLGDSR-------------RRFDKGGEAFYDQISALHKSIRGSNP 264

Query: 298 DLIEPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
           D    +  +       P    R ++ +A + +G   P 
Sbjct: 265 DAALYWFARMIDGGCDPLYLARRVVRMASEDIGNADPR 302


>gi|66046406|ref|YP_236247.1| recombination factor protein RarA [Pseudomonas syringae pv.
           syringae B728a]
 gi|63257113|gb|AAY38209.1| AAA ATPase, central region [Pseudomonas syringae pv. syringae
           B728a]
 gi|330972888|gb|EGH72954.1| recombination factor protein RarA [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 440

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 79/338 (23%), Positives = 124/338 (36%), Gaps = 49/338 (14%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L SR    +    + LR   L+E+ GQ    ++ K   EA +    AL  ++F GPPG+G
Sbjct: 3   LFSREPIAQ-PLAARLRATNLDEYVGQEHVLAHGKPLREALEQ--GALHSMIFWGPPGVG 59

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLT-------NLEDRDVLFIDEIHRLSI 119
           KTTLA+++A+    +F + S  V+A   ++   +            R +LF+DE+HR + 
Sbjct: 60  KTTLAKLLAKVSDAHFETVSA-VLAGVKEIRQAVEVARQQAGQYGKRTILFVDEVHRFNK 118

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             ++   P +ED  L  +    E PS       LSR  +    +        L +R    
Sbjct: 119 SQQDAFLPYVEDGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVNRALTE 178

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                          +RG     L ++DE    +   + G  R    LL    D AE   
Sbjct: 179 ---------------ERGLGKRQLTLSDEGFAILMSAADGDGRRMLNLLENASDLAE--- 220

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
                 EI    L  L  D                R   GG    + ISA     R +  
Sbjct: 221 ---DGSEIDVGLLQSLLGDSR-------------RRFDKGGEAFYDQISALHKSIRGSNP 264

Query: 298 DLIEPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
           D    +  +       P    R ++ +A + +G   P 
Sbjct: 265 DAALYWFARMIDGGCDPLYLARRVVRMASEDIGNADPR 302


>gi|15641121|ref|NP_230753.1| recombination factor protein RarA [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121591286|ref|ZP_01678581.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|153816923|ref|ZP_01969590.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|153823890|ref|ZP_01976557.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|227081281|ref|YP_002809832.1| hypothetical protein VCM66_1064 [Vibrio cholerae M66-2]
 gi|229505296|ref|ZP_04394806.1| ATPase AAA family [Vibrio cholerae BX 330286]
 gi|229511034|ref|ZP_04400513.1| ATPase AAA family [Vibrio cholerae B33]
 gi|229518155|ref|ZP_04407599.1| ATPase AAA family [Vibrio cholerae RC9]
 gi|229608315|ref|YP_002878963.1| recombination factor protein RarA [Vibrio cholerae MJ-1236]
 gi|254848238|ref|ZP_05237588.1| recombination factor protein RarA [Vibrio cholerae MO10]
 gi|255745521|ref|ZP_05419469.1| holliday junction DNA helicase RuvB [Vibrio cholera CIRS 101]
 gi|262158405|ref|ZP_06029521.1| holliday junction DNA helicase RuvB [Vibrio cholerae INDRE 91/1]
 gi|298498787|ref|ZP_07008594.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
 gi|9655578|gb|AAF94267.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121546870|gb|EAX57028.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|126512510|gb|EAZ75104.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|126518593|gb|EAZ75816.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|227009169|gb|ACP05381.1| conserved hypothetical protein [Vibrio cholerae M66-2]
 gi|229344870|gb|EEO09844.1| ATPase AAA family [Vibrio cholerae RC9]
 gi|229350999|gb|EEO15940.1| ATPase AAA family [Vibrio cholerae B33]
 gi|229357519|gb|EEO22436.1| ATPase AAA family [Vibrio cholerae BX 330286]
 gi|229370970|gb|ACQ61393.1| ATPase AAA family [Vibrio cholerae MJ-1236]
 gi|254843943|gb|EET22357.1| recombination factor protein RarA [Vibrio cholerae MO10]
 gi|255736596|gb|EET91993.1| holliday junction DNA helicase RuvB [Vibrio cholera CIRS 101]
 gi|262029846|gb|EEY48494.1| holliday junction DNA helicase RuvB [Vibrio cholerae INDRE 91/1]
 gi|297543120|gb|EFH79170.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
          Length = 449

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 67/342 (19%), Positives = 112/342 (32%), Gaps = 42/342 (12%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M    L            + +RP+T+E++ GQ       K    A +A    +  ++  G
Sbjct: 1   MSNYSLDFSGDEDFRPLAARMRPQTVEQYIGQQHILGPGKPLRRALEAGH--IHSMILWG 58

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIH 115
           PPG GKTTLA+V A          S  V +   ++ A +           R +LF+DE+H
Sbjct: 59  PPGTGKTTLAEVAANYANAEVERVSA-VTSGVKEIRAAIEKARENKLSGRRTILFVDEVH 117

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P +ED  +  +    E PS       LSR  +   T+            
Sbjct: 118 RFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNALLSRARVYKLTSLNQQ-------- 169

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                      +       +RG         D     +A    G  R++   L  + D A
Sbjct: 170 ------EILQALHQAIADTERGLGKVAAVFADNVLDRLAELVNGDARMSLNYLELLYDMA 223

Query: 234 EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
                     ++   A +                   ++R    G +  + ISA     R
Sbjct: 224 REDDQGRKQIDLPLLAEVAGEK---------------VSRFDNKGDIWYDLISAVHKSIR 268

Query: 294 DAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +  D    +  +       P    R L+ IA + +G   P 
Sbjct: 269 GSDPDAALYWAARMISAGCDPLYIARRLLAIASEDVGNADPR 310


>gi|153213560|ref|ZP_01948850.1| conserved hypothetical protein [Vibrio cholerae 1587]
 gi|153824929|ref|ZP_01977596.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
 gi|153828124|ref|ZP_01980791.1| ATPase, AAA family [Vibrio cholerae 623-39]
 gi|229520459|ref|ZP_04409884.1| ATPase AAA family [Vibrio cholerae TM 11079-80]
 gi|261210730|ref|ZP_05925022.1| ATPase AAA family [Vibrio sp. RC341]
 gi|124115896|gb|EAY34716.1| conserved hypothetical protein [Vibrio cholerae 1587]
 gi|148876366|gb|EDL74501.1| ATPase, AAA family [Vibrio cholerae 623-39]
 gi|149741441|gb|EDM55471.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
 gi|229342557|gb|EEO07550.1| ATPase AAA family [Vibrio cholerae TM 11079-80]
 gi|260840215|gb|EEX66795.1| ATPase AAA family [Vibrio sp. RC341]
          Length = 449

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 67/342 (19%), Positives = 112/342 (32%), Gaps = 42/342 (12%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M    L            + +RP+T+E++ GQ       K    A +A    +  ++  G
Sbjct: 1   MSNYSLDFSGDEDFRPLAARMRPQTVEQYIGQQHILGPGKPLRRALEAGH--IHSMILWG 58

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIH 115
           PPG GKTTLA+V A          S  V +   ++ A +           R +LF+DE+H
Sbjct: 59  PPGTGKTTLAEVAANYANAEVERVSA-VTSGVKEIRAAIEKARENKLSGRRTILFVDEVH 117

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P +ED  +  +    E PS       LSR  +   T+            
Sbjct: 118 RFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNALLSRARVYKLTSLNQQ-------- 169

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                      +       +RG         D     +A    G  R++   L  + D A
Sbjct: 170 ------EILQALHQAIADTERGLGKVAAVFADNVLDRLAELVNGDARMSLNYLELLYDMA 223

Query: 234 EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
                     ++   A +                   ++R    G +  + ISA     R
Sbjct: 224 REDDQGRKQIDLPLLAEVAGEK---------------VSRFDNKGDIWYDLISAVHKSIR 268

Query: 294 DAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +  D    +  +       P    R L+ IA + +G   P 
Sbjct: 269 GSDPDAALYWAARMISAGCDPLYIARRLLAIASEDVGNADPR 310


>gi|269967796|ref|ZP_06181843.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|269827616|gb|EEZ81903.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 449

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 76/327 (23%), Positives = 121/327 (37%), Gaps = 42/327 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP T+E++ GQ       K    A +A    +  ++  GPPG GKTTLA+V A 
Sbjct: 16  PLAARMRPETIEQYIGQQHILGLGKPLRRALEAGH--IHSMILWGPPGTGKTTLAEVAAN 73

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAME 130
                    S  V +   ++ A +           R +LF+DE+HR +   ++   P +E
Sbjct: 74  YANAEVERVSA-VTSGVKEIRAAIEKARENKMAGRRTILFVDEVHRFNKSQQDAFLPHIE 132

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           D  +  +    E PS       LSR        RV  LT+  +D   + +     + E  
Sbjct: 133 DGTVTFIGATTENPSFELNNALLSR-------ARVYKLTSLDKDEISLALNQAISDKE-- 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
                RG   T     D     +A    G  R++   L  + D AE        +EI   
Sbjct: 184 -----RGLGNTPAHFADNVLDRLAELVNGDARMSLNYLELLYDMAEDNAQGE--KEITLK 236

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  +A +K             ++R    G +  + ISA     R +  D    +  +  
Sbjct: 237 LLAEVAGEK-------------VSRFDNKGDIWYDLISAVHKSIRGSNPDAALYWAARMI 283

Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIPH 333
                P    R L+ IA + +G   P 
Sbjct: 284 AAGCDPLYIARRLLAIASEDVGNADPR 310


>gi|330875796|gb|EGH09945.1| recombination factor protein RarA [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 440

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 79/338 (23%), Positives = 123/338 (36%), Gaps = 49/338 (14%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L SR    +    + LR   L+E+ GQ    ++ K   EA +    AL  ++F GPPG+G
Sbjct: 3   LFSREPIAQ-PLAARLRATNLDEYVGQEHVLAHGKPLREALEQ--GALHSMIFWGPPGVG 59

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLT-------NLEDRDVLFIDEIHRLSI 119
           KTTLA+++A+    +F + S  V+A   ++   +            R +LF+DE+HR + 
Sbjct: 60  KTTLARLLAKVSDAHFETVSA-VLAGVKEIRQAVEVAKQQAGQYGKRTILFVDEVHRFNK 118

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             ++   P +ED  L  +    E PS       LSR  +    +        L +R    
Sbjct: 119 SQQDAFLPYVEDGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVNRALTE 178

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                           RG     L ++DE    +   + G  R    LL    D AE   
Sbjct: 179 ---------------DRGLGQRKLTLSDEGFAMLMAAADGDGRRMLNLLENASDLAE--- 220

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
                 EI    L  L  D                R   GG    + ISA     R +  
Sbjct: 221 ---DGSEIDLELLQSLLGDSR-------------RRFDKGGEAFYDQISALHKSIRGSNP 264

Query: 298 DLIEPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
           D    +  +       P    R ++ +A + +G   P 
Sbjct: 265 DAALYWFARMIDGGCDPLYLARRVVRMASEDIGNADPR 302


>gi|24373860|ref|NP_717903.1| recombination factor protein RarA [Shewanella oneidensis MR-1]
 gi|24348271|gb|AAN55347.1|AE015672_3 ATPase, AAA family [Shewanella oneidensis MR-1]
          Length = 445

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 80/337 (23%), Positives = 123/337 (36%), Gaps = 48/337 (14%)

Query: 8   LSRNVSQE-DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           LS N + +     + +RPRT+ E+ GQ       +   +A +A       ++  GPPG G
Sbjct: 6   LSFNFAPDFRPLAARMRPRTIAEYIGQAHLLGEGQPLRQALEAGRA--HSMMLWGPPGTG 63

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSI 119
           KTTLA+++A     +    S  V +   D+   +   +        R +LF+DE+HR + 
Sbjct: 64  KTTLAELIAHYSNAHVERISA-VTSGVKDIRGAIEQAQAIAQSRGQRTLLFVDEVHRFNK 122

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             ++   P +ED  +  +    E PS       LSR        RV L+    QD     
Sbjct: 123 SQQDAFLPFIEDGTVIFIGATTENPSFEINNALLSR-------ARVYLIKRLSQDEIVHI 175

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
           I     + E       RG     L +  +   ++A    G  R A  LL  + D   VA 
Sbjct: 176 ITQALADTE-------RGLGQRALNMPTDVLNKLAQLCDGDARKALNLLELMSDM--VAD 226

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
             T T E+             GFD                G    + ISA     R +  
Sbjct: 227 GGTFTTEMLV---QVAGHQVAGFD--------------KNGDQFYDLISAVHKSIRGSAP 269

Query: 298 DLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           D    +  +       P    R L+ IA + +G   P
Sbjct: 270 DAALYWFCRILEGGGDPLYVARRLLAIASEDVGNADP 306


>gi|148263766|ref|YP_001230472.1| recombination factor protein RarA [Geobacter uraniireducens Rf4]
 gi|146397266|gb|ABQ25899.1| Recombination protein MgsA [Geobacter uraniireducens Rf4]
          Length = 435

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 73/346 (21%), Positives = 134/346 (38%), Gaps = 53/346 (15%)

Query: 2   MDR-EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD  +   + +  +E      +RPRTL E+ GQ       K+  +  +   + L  ++F 
Sbjct: 1   MDLFDRKAAADTLKEAPLAERMRPRTLAEYVGQEHLLGPGKLLRQLIET--DQLTSLIFW 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDE 113
           GPPG GKTTLA+++A     +F   S  +++   ++  ++            R +LF+DE
Sbjct: 59  GPPGSGKTTLARIIAGATKSHFIFFSA-ILSGIKEIREIVKEADDIRKFHGKRTILFVDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++   P +E     ++    E PS   +   LSR  ++          NPL 
Sbjct: 118 IHRFNKSQQDAFLPYVERGVFTIIGATTENPSFEVIAPLLSRCKVLVL--------NPLT 169

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
           +     I       +      +RG     LA+ D+A   +A ++ G  R+A   L     
Sbjct: 170 EEEITGILRQALADK------ERGLGALDLAIEDDALTFMAEQAGGDARVALNTLETA-- 221

Query: 232 FAEVAHAKTITREIADAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGL 289
            + +     ++ + A  A+ +     DK G +                       ISA +
Sbjct: 222 -SRLTSNGVVSLDTAREAVQKKPLLYDKGGEEHY-------------------NVISAFI 261

Query: 290 SEPRDAIEDLIEPYMIQQGFIQRTPRG--RLLMPIAWQHLGIDIPH 333
              R +  D    ++ +       P    R ++ +A + +G   P 
Sbjct: 262 KSMRGSDPDGALYWLARMIEAGEDPIFILRRMVILASEDIGNADPR 307


>gi|297584737|ref|YP_003700517.1| AAA ATPase central domain-containing protein [Bacillus
           selenitireducens MLS10]
 gi|297143194|gb|ADH99951.1| AAA ATPase central domain protein [Bacillus selenitireducens MLS10]
          Length = 443

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 73/343 (21%), Positives = 124/343 (36%), Gaps = 43/343 (12%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD           +    + +RP TL+E  GQ        +   A +A  + L  ++F G
Sbjct: 1   MDLFSTPPEQERPKGPLAARMRPVTLDEIFGQTHIIGEGTLLRRAIEA--DRLSPMIFHG 58

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEI 114
           PPG GKTTLA+V+A      F   +  V A   D+  +++  +        R VLFIDEI
Sbjct: 59  PPGTGKTTLAKVIANTTAAAFEQLNA-VTAGIKDVREMVSQAKSRLDYDHKRTVLFIDEI 117

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++ L P +ED  + L+    E P        +SR  L             +  
Sbjct: 118 HRFNKGQQDALLPHVEDGTVILIGATTENPMFEVNPALISRSRLFRLELLSDGDMRKV-- 175

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
                       +E      +RG     ++ ++EA   I   + G  R A   L      
Sbjct: 176 ------------LEHALNDAKRGFGDYQVSFSEEAFNHIIDVAGGDARTALNALELAVLT 223

Query: 233 AEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEP 292
            +    + I  +                +  +      + R    G    +T+SA +   
Sbjct: 224 TDADENEVIRID---------------LETAEASIQRRMIRYDKKGDNHYDTVSAFIKSI 268

Query: 293 RDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           R +  D    ++ +  +    PR   R +   A + +G+  P+
Sbjct: 269 RGSDPDATLYWLAKMIYAGEEPRFIARRIYVHAAEDVGLADPN 311


>gi|238020918|ref|ZP_04601344.1| hypothetical protein GCWU000324_00815 [Kingella oralis ATCC 51147]
 gi|237867898|gb|EEP68904.1| hypothetical protein GCWU000324_00815 [Kingella oralis ATCC 51147]
          Length = 436

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 73/339 (21%), Positives = 115/339 (33%), Gaps = 54/339 (15%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L S+  S        LRPRTL E  GQ       K    A    +     ++  G  G+G
Sbjct: 4   LFSQAPSA--PLAERLRPRTLAEVLGQEHLTGAGKPL--AVALASGEPHSMILWGSAGIG 59

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSII 120
           KTTLA++VA+     F   S  V +   D+   +T  E       R +LF+DE+HR +  
Sbjct: 60  KTTLARIVAQGFDAQFLPISA-VFSGVKDIREAITQAEMAWQRGKRTILFVDEVHRFNKA 118

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR-FGIP 177
            ++   P +E   +  +    E PS       LSR  +             L D+ F +P
Sbjct: 119 QQDAFLPHVESGLITFIGATTENPSFEVNAALLSRAQVYTLKPLNPEALAQLCDKVFRLP 178

Query: 178 IRLNF-YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
                    E  + I+Q                     + G  R     L ++   A   
Sbjct: 179 ENAQIRITPEAQQLIIQ--------------------HADGDARRLLNTLEQIIRAARTQ 218

Query: 237 HAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAI 296
           +   I  E+    L                  + + R   GG      ISA     R + 
Sbjct: 219 NIAEIGSELVAQTLG-----------------SQLRRFDKGGEAFYNQISALHKSVRGSH 261

Query: 297 EDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +    +  +       PR   R ++ +AW+ +G+  P 
Sbjct: 262 PNAALYWFCRMIDGGADPRYLARRIVRMAWEDIGLADPR 300


>gi|226944894|ref|YP_002799967.1| recombination factor protein RarA [Azotobacter vinelandii DJ]
 gi|226719821|gb|ACO78992.1| recombination factor protein RarA [Azotobacter vinelandii DJ]
          Length = 441

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 72/328 (21%), Positives = 121/328 (36%), Gaps = 48/328 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + LRP +L+E+ GQ    +  K   EA +    AL  ++F GPPG+GKTTLA+++A+
Sbjct: 12  PLAARLRPASLDEYVGQEHLLARGKPLREALEQ--GALHSMIFWGPPGVGKTTLARLLAK 69

Query: 77  ELGVNFRSTSGPVIAKAGDLAALL-------TNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
               +F + S  V+A   ++   +            R +LF+DE+HR +   ++   P +
Sbjct: 70  VTDAHFETISA-VLAGVKEIRQAVEIARQQAAQHGRRTILFVDEVHRFNKSQQDAFLPYV 128

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ED  L  +    E PS       LSR  +    +        L +R              
Sbjct: 129 EDGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAALRRLAER-------------- 174

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
                +RG     L++ +++   +   + G  R    LL    D  E   A         
Sbjct: 175 -ALGEERGLGGRHLSLPEDSLRMLLAAADGDGRRLLNLLENAADLVEDDQA--------- 224

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
                     +G + L         R   GG    + ISA     R +  D    +  + 
Sbjct: 225 ----------IGTELLGNLLGDSRRRFDKGGEAFYDQISALHKSVRGSSPDAALYWFARM 274

Query: 308 GFIQRTP--RGRLLMPIAWQHLGIDIPH 333
                 P    R ++ +A + +G   P 
Sbjct: 275 LDGGCDPLYLARRVVRMASEDIGNADPR 302


>gi|260773038|ref|ZP_05881954.1| ATPase AAA family [Vibrio metschnikovii CIP 69.14]
 gi|260612177|gb|EEX37380.1| ATPase AAA family [Vibrio metschnikovii CIP 69.14]
          Length = 449

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 73/342 (21%), Positives = 122/342 (35%), Gaps = 42/342 (12%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M    L            + +RP+T+E++ GQ       K    A +A    L  ++  G
Sbjct: 1   MSNYRLDFSGDEDFRPLAARMRPQTIEQYIGQQHILGQDKPLRRALQAGH--LHSMILWG 58

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIH 115
           PPG GKTTLA+V A          S  V +   ++ A +           R +LF+DE+H
Sbjct: 59  PPGTGKTTLAEVAANYANAEVERVSA-VTSGVKEIRAAIDRARENQRVGRRTILFVDEVH 117

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P +ED  +  +    E PS       LSR  +   T+            
Sbjct: 118 RFNKSQQDAFLPYIEDGTVTFIGATTENPSFELNNALLSRARVYKLTS------------ 165

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
             + +      ++      Q+G         D     +A    G  R++   L  + D A
Sbjct: 166 --LSVDEILQTLQQAIDDKQKGLGQHPADFHDNVLQRLAELVNGDARMSLNYLELLYDMA 223

Query: 234 EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
             +      ++I  + L  +A +K             +AR    G +  + ISA     R
Sbjct: 224 --SQDAQGRKQITLSLLAEVAGEK-------------VARFDNKGDIWYDLISALHKSIR 268

Query: 294 DAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +  D    +M +       P    R L+ IA + +G   P 
Sbjct: 269 GSNADAALYWMARMISAGCDPLYIARRLLAIASEDVGNADPR 310


>gi|330965615|gb|EGH65875.1| recombination factor protein RarA [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 440

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 79/338 (23%), Positives = 122/338 (36%), Gaps = 49/338 (14%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L SR    +    + LR   L+E+ GQ    ++ K   EA +    AL  ++F GPPG+G
Sbjct: 3   LFSREPIAQ-PLAARLRATNLDEYVGQEHVLAHGKPLREALEQ--GALHSMIFWGPPGVG 59

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLT-------NLEDRDVLFIDEIHRLSI 119
           KTTLA+++A+    +F + S  V+A   ++   +            R +LF+DE+HR + 
Sbjct: 60  KTTLARLLAKVSDAHFETVSA-VLAGVKEIRQAVEVAKQQAGQYGKRTILFVDEVHRFNK 118

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             ++   P +ED  L  +    E PS       LSR  +    +        L +R    
Sbjct: 119 SQQDAFLPYVEDGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVNRALTE 178

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                           RG     L + DE    +   + G  R    LL    D AE   
Sbjct: 179 ---------------DRGLGQRKLTLNDEGFAMLMAAADGDGRRMLNLLENASDLAE--- 220

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
                 EI    L  L  D                R   GG    + ISA     R +  
Sbjct: 221 ---DGSEIDLELLQSLLGDSR-------------RRFDKGGEAFYDQISALHKSIRGSNP 264

Query: 298 DLIEPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
           D    +  +       P    R ++ +A + +G   P 
Sbjct: 265 DAALYWFARMIDGGCDPLYLARRVVRMASEDIGNADPR 302


>gi|260888003|ref|ZP_05899266.1| replication-associated recombination protein A [Selenomonas
           sputigena ATCC 35185]
 gi|260862254|gb|EEX76754.1| replication-associated recombination protein A [Selenomonas
           sputigena ATCC 35185]
          Length = 450

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 76/345 (22%), Positives = 131/345 (37%), Gaps = 52/345 (15%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M++E L  R V  +    + +RP++L ++ GQ       K+  +      + +  ++F G
Sbjct: 11  MEQESLFRREV--DLPLAARMRPKSLADYVGQQHLVGKGKMLRKLI--AEDKIFSMIFWG 66

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIH 115
           PPG+GKTTLA+++ARE    F   S  V +   ++  ++   E      +R +LF+DEIH
Sbjct: 67  PPGVGKTTLARIIARETKARFIDFSA-VTSGIKEIRTVMQEAEKNTAYGERTILFVDEIH 125

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P +E   + L+    E PS       LSR  +             L  R
Sbjct: 126 RFNKAQQDAFLPFVEKGSIILIGATTENPSFEINSALLSRCRVFVLKALQKEDILGLLRR 185

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                                G     + + D+    +A+ + G  R A   L  V    
Sbjct: 186 ---------------ALAAPEGFGNQKVEIADDLLEALAVFANGDARTALSTLEIVVLNG 230

Query: 234 EVAHAKTI-TREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
           EV       TRE  +  L + +   DK G +  +L                   ISA   
Sbjct: 231 EVEKDAIKVTRETVEQCLEKKSLLYDKKGEEHYNL-------------------ISALHK 271

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
             R++  D    ++ +       P    R ++  A + +G+  P 
Sbjct: 272 SMRNSDADASVYWLARMLEAGEDPLYIARRIVRFASEDVGLADPR 316


>gi|240948710|ref|ZP_04753082.1| recombination factor protein RarA [Actinobacillus minor NM305]
 gi|240296926|gb|EER47504.1| recombination factor protein RarA [Actinobacillus minor NM305]
          Length = 444

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 79/341 (23%), Positives = 124/341 (36%), Gaps = 52/341 (15%)

Query: 8   LSRNVSQE-DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
            S + +++     + +RPR L E+ GQ       K    A +++      ++F GPPG G
Sbjct: 4   FSFDFAEDFRPLSARMRPRNLSEYIGQHHLIGEGKPLRRAIESKH--PHSMIFWGPPGTG 61

Query: 67  KTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           KTTLA+++A     +    S        I +A + A L      R +LF+DE+HR +   
Sbjct: 62  KTTLAEIIAYHFDADVERLSAVTSGIKEIREAIERAKLNRQTGRRTLLFVDEVHRFNKSQ 121

Query: 122 EEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           ++   P +ED  +  +    E PS       LSR  +         +  PLQ    + + 
Sbjct: 122 QDAFLPYIEDGTIIFIGATTENPSFELNNALLSRARV--------YILKPLQPADVLVVL 173

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
            N    +       RG     + + D     +A    G  R A   L ++ D A    A 
Sbjct: 174 QNALNDK------TRGLGAEKIILKDNVLNLLADYVNGDARYALNCLEQMSDMATQTEAG 227

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMI-----ARNFGGGPVGIETISAGLSEPRD 294
            +                      DL  LT I     AR   GG    + ISA     R 
Sbjct: 228 KLF---------------------DLNLLTEILGERLARFDKGGDRYYDLISALHKSIRG 266

Query: 295 AIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +  D    +  +       P    R L+ IA + +G   P 
Sbjct: 267 SSPDGALYWYARILTAGGDPLYVARRLLAIASEDIGNADPR 307


>gi|269836458|ref|YP_003318686.1| AAA ATPase central domain-containing protein [Sphaerobacter
           thermophilus DSM 20745]
 gi|269785721|gb|ACZ37864.1| AAA ATPase central domain protein [Sphaerobacter thermophilus DSM
           20745]
          Length = 460

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 87/345 (25%), Positives = 133/345 (38%), Gaps = 51/345 (14%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD      R++ ++ A ++  +RPRTL+EF GQ +      +   A +   + L  ++  
Sbjct: 1   MDLFEAHKRDLLRKRAPLADRMRPRTLDEFVGQEQVVGPGTLLRRAIEQ--DRLSSLILW 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDE 113
           GPPG GKTTLA+++A      F   S  V A   DL   +            R +LFIDE
Sbjct: 59  GPPGSGKTTLARIIATVTKAEFVQVSA-VSAGVADLRREVKEASDRLGMHGRRTILFIDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++ + P +ED  + L+    E PS       LSR       +RV +L     
Sbjct: 118 IHRFNRAQQDAILPYVEDGTIILIGATTENPSFEVNSPLLSR-------SRVIVLKALDD 170

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
           D     +     + E       RG    GL + D A   +   + G  R A   L     
Sbjct: 171 DAVRTIVLRALEDPE-------RGLGGQGLRIDDSALDLLVNLANGDARFALNTLEMASV 223

Query: 232 FAEVAHAKTITREIADAALLRLA-IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
            AE  +      ++A+AA  R    D+ G    D                   TISA   
Sbjct: 224 GAE--NGVIGREQVAEAAYQRAGVYDRAGDAHYD-------------------TISALHK 262

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
             R +  D    ++ +       P    R L+  A + +G+  P 
Sbjct: 263 SIRGSDPDAALYWLARMLERGDDPLYVARRLVRAASEDIGLADPQ 307


>gi|331017252|gb|EGH97308.1| recombination factor protein RarA [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 440

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 79/338 (23%), Positives = 123/338 (36%), Gaps = 49/338 (14%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L SR    +    + LR   L+E+ GQ    ++ K   EA +    AL  ++F GPPG+G
Sbjct: 3   LFSREPIAQ-PLAARLRATNLDEYVGQEHVLAHGKPLREALEQ--GALHSMIFWGPPGVG 59

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLT-------NLEDRDVLFIDEIHRLSI 119
           KTTLA+++A+    +F + S  V+A   ++   +            R +LF+DE+HR + 
Sbjct: 60  KTTLARLLAKVSDAHFETVSA-VLAGVKEIRQAVEVAKQQAGQYGKRTILFVDEVHRFNK 118

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             ++   P +ED  L  +    E PS       LSR  +    +        L +R    
Sbjct: 119 SQQDAFLPYVEDGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVNRALTE 178

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                           RG     L ++DE    +   + G  R    LL    D AE   
Sbjct: 179 ---------------DRGLGQRKLTLSDEGFAMLMAAADGDGRRMLNLLENASDLAE--- 220

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
                 EI    L  L  D                R   GG    + ISA     R +  
Sbjct: 221 ---DGSEIDIELLQSLLGDSR-------------RRFDKGGEAFYDQISALHKSIRGSNP 264

Query: 298 DLIEPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
           D    +  +       P    R ++ +A + +G   P 
Sbjct: 265 DAALYWFARMIDGGCDPLYLARRVVRMASEDIGNADPR 302


>gi|197304052|ref|ZP_03169081.1| hypothetical protein RUMLAC_02786 [Ruminococcus lactaris ATCC
           29176]
 gi|197296877|gb|EDY31448.1| hypothetical protein RUMLAC_02786 [Ruminococcus lactaris ATCC
           29176]
          Length = 443

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 80/347 (23%), Positives = 131/347 (37%), Gaps = 52/347 (14%)

Query: 2   MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD    +     ++++ + S +RP TLEE  GQ       K+   A KA  + L  ++F 
Sbjct: 6   MDLFDYMRETAKEKESPLASRMRPTTLEEVVGQQHIIGKGKLLYRAIKA--DKLSSLIFY 63

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDE 113
           GPPG GKTTLA+V+A      F+  +  V A   D+  ++   +D       + +LFIDE
Sbjct: 64  GPPGTGKTTLAKVIANTTSAEFKQINATV-AGKKDMEEVVKAAKDLQGMYGKKTILFIDE 122

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++ L P +ED  L L+    E P        +SR ++             L 
Sbjct: 123 IHRFNKGQQDYLLPFVEDGTLILIGATTENPYFEVNGALISRSSIFELKPLEKEDIKKLL 182

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R                   ++G       +  +A   +A  S G  R A   +     
Sbjct: 183 VR--------------AVEDTEKGMGSFHAQIDPDALEFLADVSGGDARNALNAVELGIL 228

Query: 232 FAEVAHAKTI--TREIADAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISA 287
             + +    I  T E+A   + +     DK G +  D+                   ISA
Sbjct: 229 TTDRSSDGIIHLTLEVASECIQKRVVNYDKKGDNHYDI-------------------ISA 269

Query: 288 GLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
            +   R +  D    Y+ +  +     +   R +M  A + +G   P
Sbjct: 270 FIKSMRGSDPDAAVFYLAKMLYAGEDVKFIARRIMICASEDVGNADP 316


>gi|297578710|ref|ZP_06940638.1| ATPase [Vibrio cholerae RC385]
 gi|297536304|gb|EFH75137.1| ATPase [Vibrio cholerae RC385]
          Length = 449

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 67/342 (19%), Positives = 112/342 (32%), Gaps = 42/342 (12%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M    L            + +RP+T+E++ GQ       K    A +A    +  ++  G
Sbjct: 1   MSNYSLDFSGDEDFRPLAARMRPQTVEQYIGQQHILGPGKPLRRALEAGH--IHSMILWG 58

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIH 115
           PPG GKTTLA+V A          S  V +   ++ A +           R +LF+DE+H
Sbjct: 59  PPGTGKTTLAEVAANYANAEVERVSA-VTSGVKEIRAAIEKARENKLSGRRTILFVDEVH 117

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P +ED  +  +    E PS       LSR  +   T+            
Sbjct: 118 RFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNALLSRARVYKLTSLNQQ-------- 169

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                      +       +RG         D     +A    G  R++   L  + D A
Sbjct: 170 ------EILQALHQAIADSERGLGKVAAVFADNVLDRLAELVSGDARMSLNYLELLYDMA 223

Query: 234 EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
                     ++   A +                   ++R    G +  + ISA     R
Sbjct: 224 REDDQGRKQIDLPLLAEVAGEK---------------VSRFDNKGDIWYDLISAVHKSIR 268

Query: 294 DAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +  D    +  +       P    R L+ IA + +G   P 
Sbjct: 269 GSDPDAALYWAARMISAGCDPLYIARRLLAIASEDVGNADPR 310


>gi|319941979|ref|ZP_08016300.1| AAA ATPase central domain-containing protein [Sutterella
           wadsworthensis 3_1_45B]
 gi|319804632|gb|EFW01502.1| AAA ATPase central domain-containing protein [Sutterella
           wadsworthensis 3_1_45B]
          Length = 468

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 66/328 (20%), Positives = 109/328 (33%), Gaps = 50/328 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+TL+E  GQ +          A + R      ++  GPPG+GKTT+A+++A 
Sbjct: 36  PLAERMRPQTLDEVIGQKKLLGPGAPLRVAFENR--RPHSMILWGPPGVGKTTIARLMAN 93

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAM 129
              + F + S  V+    D+   +   +          V+F+DE+HR S   ++   P +
Sbjct: 94  AFDLPFIAISA-VLGGVKDIREAVDAAKQTLAATQRPTVVFVDEVHRFSKSQQDAFLPHV 152

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E      +    E PS   V   LSR T+    +     T  L DR             +
Sbjct: 153 ESGLFIFVGATTENPSFEVVNALLSRATVYQLESLSKEETGELIDRAMTREFSELTLNPE 212

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            + I+                      + G  R     L      A      TI      
Sbjct: 213 ARGIL-------------------IELADGDARRCLNALDVCCTMARERRIGTIDAAFLR 253

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
                                  + R   GG    + ISA     R +  D    ++++ 
Sbjct: 254 KTTPA-----------------TLRRFDKGGDNFYDQISALHKSVRGSDPDAALYWLMRM 296

Query: 308 GFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                 PR   R LM ++ + +G+  P 
Sbjct: 297 LDGGCDPRYIARRLMRMSVEDIGLADPR 324


>gi|285018238|ref|YP_003375949.1| ATPase [Xanthomonas albilineans GPE PC73]
 gi|283473456|emb|CBA15961.1| putative atpase protein [Xanthomonas albilineans]
          Length = 457

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 78/332 (23%), Positives = 122/332 (36%), Gaps = 55/332 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+TLEE  GQ    +       A  A    +  ++  GPPG GKTTLA ++A+
Sbjct: 24  PLAERMRPQTLEEMVGQKRLLTPSSALRRAVTA--GRVHSMILWGPPGCGKTTLALLLAQ 81

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAME 130
                F++ S  V++   D+  +L           R VLF+DE+HR +   ++   P +E
Sbjct: 82  YADAEFKAISA-VLSGLPDVRLVLAEAAQRFADGRRTVLFVDEVHRFNKAQQDAFLPHIE 140

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTL-----IAATTRVGLLTNPLQDRFGIPIRLNFY 183
              +  +    E PS       LSR  +     ++    V  L   L D           
Sbjct: 141 RGNILFVGATTENPSFELNSALLSRCRVHVLEAVSPQDIVEALQRALHD----------- 189

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
                    +RG     + V+D A  EIA  + G  R A  LL    + A+         
Sbjct: 190 --------AERGLGAEQIQVSDAALLEIASAADGDVRRALTLLEIAAELAQDEGG----- 236

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           EI    L ++  D+               R   GG    + ISA     R +  D    +
Sbjct: 237 EITAQTLQQVLADRT-------------RRFDKGGEQFYDQISALHKSVRSSNPDAALYW 283

Query: 304 MIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
           + +       P    R L  +A + +G+  P 
Sbjct: 284 LTRMLDGGCDPAYLARRLTRMAIEDIGLADPR 315


>gi|224542189|ref|ZP_03682728.1| hypothetical protein CATMIT_01364 [Catenibacterium mitsuokai DSM
           15897]
 gi|224524880|gb|EEF93985.1| hypothetical protein CATMIT_01364 [Catenibacterium mitsuokai DSM
           15897]
          Length = 436

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 68/332 (20%), Positives = 126/332 (37%), Gaps = 50/332 (15%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            +   S LRP  L+EF GQ       K+     +   +++  ++F GPPG+GKTTLA+++
Sbjct: 10  NEPLPSRLRPDNLDEFVGQTHLVGKGKILRRLIET--DSISSMIFWGPPGVGKTTLARII 67

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPA 128
           A     +F   S  V +   ++  ++   E      ++ +LF+DEIHR +   ++   P 
Sbjct: 68  ASHTHSSFIDFSA-VTSGIKEIREVMKQAENNRVFGEKTILFVDEIHRFNKSQQDAFLPF 126

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           +E   + L+    E PS       LSR  +         + N L++   + +  +     
Sbjct: 127 VEKGSIILIGATTENPSFEINGALLSRCKV--------FVLNALEEEDIVSLLKHAISSP 178

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
                  +G     + ++D+    IA  S G  R A   L  V + ++         +  
Sbjct: 179 -------KGFGNMKIDISDDCLHLIASFSNGDARNALSTLEMVINNSDEKDGIIHVTKTI 231

Query: 247 DAALLRLA---IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
                +      DK G +  +L                   ISA     R++  D    +
Sbjct: 232 IEQCTQKKSLLYDKKGEEHYNL-------------------ISALHKSMRNSDPDAAIYW 272

Query: 304 MIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           + +       P    R ++  A + +G+  P 
Sbjct: 273 LARMLEAGEDPLYVARRVIRFASEDIGLADPR 304


>gi|213970053|ref|ZP_03398185.1| ATPase, AAA family [Pseudomonas syringae pv. tomato T1]
 gi|301381409|ref|ZP_07229827.1| recombination factor protein RarA [Pseudomonas syringae pv. tomato
           Max13]
 gi|302058407|ref|ZP_07249948.1| recombination factor protein RarA [Pseudomonas syringae pv. tomato
           K40]
 gi|302130344|ref|ZP_07256334.1| recombination factor protein RarA [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|213925157|gb|EEB58720.1| ATPase, AAA family [Pseudomonas syringae pv. tomato T1]
          Length = 440

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 79/338 (23%), Positives = 123/338 (36%), Gaps = 49/338 (14%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L SR    +    + LR   L+E+ GQ    ++ K   EA +    AL  ++F GPPG+G
Sbjct: 3   LFSREPIAQ-PLAARLRATNLDEYVGQEHVLAHGKPLREALEQ--GALHSMIFWGPPGVG 59

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLT-------NLEDRDVLFIDEIHRLSI 119
           KTTLA+++A+    +F + S  V+A   ++   +            R +LF+DE+HR + 
Sbjct: 60  KTTLARLLAKVSDAHFETVSA-VLAGVKEIRQAVEVAKQQAGQYGKRTILFVDEVHRFNK 118

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             ++   P +ED  L  +    E PS       LSR  +    +        L +R    
Sbjct: 119 SQQDAFLPYVEDGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVNRALTE 178

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                           RG     L ++DE    +   + G  R    LL    D AE   
Sbjct: 179 ---------------DRGLGQRKLTLSDEGFAMLMAAADGDGRRMLNLLENASDLAE--- 220

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
                 EI    L  L  D                R   GG    + ISA     R +  
Sbjct: 221 ---DGSEIDIELLQSLLGDSR-------------RRFDKGGEAFYDQISALHKSIRGSNP 264

Query: 298 DLIEPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
           D    +  +       P    R ++ +A + +G   P 
Sbjct: 265 DAALYWFARMIDGGCDPLYLARRVVRMASEDIGNADPR 302


>gi|21113093|gb|AAM41265.1| ATPase [Xanthomonas campestris pv. campestris str. ATCC 33913]
 gi|66573854|gb|AAY49264.1| ATPase [Xanthomonas campestris pv. campestris str. 8004]
          Length = 428

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 72/322 (22%), Positives = 120/322 (37%), Gaps = 45/322 (13%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRTL+E  GQ    +       A +  +  +  ++  GPPG GKTTLA ++A      
Sbjct: 1   MRPRTLDEMVGQKRLLAADSALRRAVE--SGRVHSMILWGPPGCGKTTLALLLAHYADAE 58

Query: 82  FRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F++ S  V++   D+  +L           R VLF+DE+HR +   ++   P +E   + 
Sbjct: 59  FKAISA-VLSGLPDVRQVLAEAAQRFASGRRTVLFVDEVHRFNKAQQDAFLPHIERGTIL 117

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
            +    E PS       LSR  +                  G+  +     ++      +
Sbjct: 118 FVGATTENPSFELNSALLSRCRVHVLE--------------GVSPQDIVEALQRALHDAE 163

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           RG     + V++ +  EIA  + G  R A  LL    + A          EI    LL++
Sbjct: 164 RGLGQETIQVSEASLLEIASAADGDVRRALTLLEIAAELATGEGG-----EITPRTLLQV 218

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
             D+               R    G    + ISA     R +  D    ++ +       
Sbjct: 219 LADRT-------------RRFDKNGEQFYDQISALHKSVRSSNPDAALYWLTRMLDGGCD 265

Query: 314 P--RGRLLMPIAWQHLGIDIPH 333
           P    R L  +A + +G+  P 
Sbjct: 266 PAYLARRLTRMAIEDIGLADPR 287


>gi|37521678|ref|NP_925055.1| recombination factor protein RarA/unknown domain fusion protein
           [Gloeobacter violaceus PCC 7421]
 gi|35212676|dbj|BAC90050.1| glr2109 [Gloeobacter violaceus PCC 7421]
          Length = 747

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 71/340 (20%), Positives = 128/340 (37%), Gaps = 43/340 (12%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           E    +  + E      +RPR+L++F GQ       ++   A +A  + L  ++F GPPG
Sbjct: 18  ERHREQQQAAEAPLADRMRPRSLDQFVGQGHIVGPGRLLRRAIQA--DQLSSLIFYGPPG 75

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRL 117
            GKTTLA+++A     +F + +  V+A   D+   +   +        R +LF+DE+HR 
Sbjct: 76  TGKTTLARIIAGTTRAHFIAINA-VLAGVKDIREAIDEAKSRRGQFGRRTILFVDEVHRF 134

Query: 118 SIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
           +   ++ L P +E+  + L+    E P     K  +SR  L              +D   
Sbjct: 135 NKSQQDALLPWIENGTIVLVGATTENPFFEVNKALVSRSRLFQLKLLES------EDLRA 188

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
           + +              +RG     + +  EA   +   + G  R     L    +    
Sbjct: 189 VAL--------QALADTERGYGKRNVRLDPEALAHLVDVAGGDARTLLNALELAVETTPA 240

Query: 236 AHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDA 295
                I   +  A        +    +  + Y          G V  +TISA +   R +
Sbjct: 241 DGDGAIRITLPVA--------EESIQRRAVLY-------DKEGDVHFDTISAYIKSLRGS 285

Query: 296 IEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
             D    ++ +  +    PR   R L+  A + +G+  P 
Sbjct: 286 DPDAALYWLARMIYAGEEPRFIFRRLLIQASEDVGLADPQ 325


>gi|39997165|ref|NP_953116.1| recombination factor protein RarA [Geobacter sulfurreducens PCA]
 gi|39984055|gb|AAR35443.1| ATPase, AAA family [Geobacter sulfurreducens PCA]
 gi|307634974|gb|ADI84901.2| stalled replication fork rescue ATPase [Geobacter sulfurreducens
           KN400]
          Length = 440

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 76/338 (22%), Positives = 129/338 (38%), Gaps = 52/338 (15%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           +    +       +RPRTL+E+ GQ       K+     +  ++ L  ++F GPPG GKT
Sbjct: 9   AAEALRNAPLAERMRPRTLDEYVGQEHLLGEGKLLRRLIE--SDTLTSLIFWGPPGSGKT 66

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIV 121
           TLA+V+A     +F   S  +++   ++  ++   E+         +LF+DEIHR +   
Sbjct: 67  TLARVIANATKSHFIFFSA-ILSGIKEIREIVKEAEEEKKYRGRNTILFVDEIHRFNKSQ 125

Query: 122 EEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           ++   P +E     ++    E PS   V   LSR  ++          NPL       I 
Sbjct: 126 QDAFLPYVERGTFTIIGATTENPSFEVVAPLLSRCKVLVL--------NPLSQENVEQIL 177

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
            +           +RG   +GLA  D+A   +A +S G  R+A   L      A +    
Sbjct: 178 RSAL------ADPERGLGASGLAADDDALAFMAEQSGGDGRVALNTLETA---ARLVKNG 228

Query: 240 TITREIADAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
            I  E    A+ +     DK G +                       ISA +   R +  
Sbjct: 229 RIDLESVREAIQKKPLLYDKGGEEHY-------------------NVISAFIKSMRGSDP 269

Query: 298 DLIEPYMIQQGFIQRTPRG--RLLMPIAWQHLGIDIPH 333
           D    ++ +       P    R ++ +A + +G   P 
Sbjct: 270 DGALYWLARMIEAGEDPLFILRRMVILASEDIGNADPR 307


>gi|218133225|ref|ZP_03462029.1| hypothetical protein BACPEC_01089 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992098|gb|EEC58102.1| hypothetical protein BACPEC_01089 [Bacteroides pectinophilus ATCC
           43243]
          Length = 447

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 75/345 (21%), Positives = 128/345 (37%), Gaps = 44/345 (12%)

Query: 1   MMDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           +MD    +  N  ++++ + S +RP TLEE  GQ       ++   A KA  + +  ++F
Sbjct: 4   LMDLFQYMRENTMEKESPLASRMRPETLEEVVGQQHIIGKDRLLYRAIKA--DKISSIIF 61

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFID 112
            GPPG GKTTLA+V+A     +F   +  V A   D+  ++   +D       + +LF+D
Sbjct: 62  YGPPGTGKTTLAKVIANTTSADFCQINATV-AGKKDMEDVVAKAKDNIGMYGRKTILFVD 120

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           EIHR +   ++ L P +ED  + L+    E P     +  +SR                 
Sbjct: 121 EIHRFNKGQQDYLLPFVEDGTIILIGATTENPYFEVNQALISR----------------- 163

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
                    L   E +D+  +++R        +    A      S      A    R   
Sbjct: 164 ----SAVFELRPLEKDDILKLIKRAISDDKKGMGAYGALIDDDASEFLADCANGDARNAL 219

Query: 231 DFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
           +  E+A   T   E             +  D         + +    G    +TISA + 
Sbjct: 220 NAVELAVLTTSPSE--------DGHIHITIDVASDCIQKRVLKYDKTGDNHYDTISAFIK 271

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
             R +  D    Y+ +  +         R +M  A + +G   P 
Sbjct: 272 SMRGSDPDAAVYYLARMLYAGEDVAFIARRIMICASEDVGNADPR 316


>gi|152987484|ref|YP_001347959.1| recombination factor protein RarA [Pseudomonas aeruginosa PA7]
 gi|150962642|gb|ABR84667.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7]
          Length = 441

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 79/343 (23%), Positives = 127/343 (37%), Gaps = 52/343 (15%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD     S  V+Q     + LRP  L+E+ GQ    +  K   EA +    AL  ++F G
Sbjct: 1   MDLFR--SEPVAQ--PLAARLRPANLDEYVGQEHLLARGKPLREALEQ--GALHSMIFWG 54

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALL-------TNLEDRDVLFIDEI 114
           PPG+GKTTLA+++A+    +F + S  V++   ++   +            R +LF+DE+
Sbjct: 55  PPGVGKTTLARLLAQVSDAHFETISA-VLSGVKEIRQAVEVAKQHAAQYGRRTILFVDEV 113

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++   P +ED  L  +    E PS       LSR  +    +        L  
Sbjct: 114 HRFNKSQQDAFLPYVEDGTLIFIGATTENPSFELNNALLSRARVYVLKSLDETALRKLVG 173

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R                   ++G     L++ +E+   +   + G  R    LL    D 
Sbjct: 174 RALNE---------------EKGLGKRNLSLPEESFQVLLAAADGDGRRLLNLLENAADL 218

Query: 233 AEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEP 292
           AE         EI+   L  L  D                R   GG    + ISA     
Sbjct: 219 AE------DGSEISPELLQNLLGD-------------TRRRFDKGGEAFYDQISALHKSV 259

Query: 293 RDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           R +  D    +  +       P    R ++ +A + +G   P 
Sbjct: 260 RGSNPDAALYWFARMLDGGCDPLYIARRVVRMASEEVGNADPR 302


>gi|300854386|ref|YP_003779370.1| putative helicase subunit of Holliday junction resolvase
           [Clostridium ljungdahlii DSM 13528]
 gi|300434501|gb|ADK14268.1| predicted helicase subunit of Holliday junction resolvase
           [Clostridium ljungdahlii DSM 13528]
          Length = 438

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 79/351 (22%), Positives = 120/351 (34%), Gaps = 62/351 (17%)

Query: 2   MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD     +   ++E   +   +RP TLEEF GQ    S  K+   A     + +   +F 
Sbjct: 1   MDLFDFANNKNNKELKPLAERMRPETLEEFIGQEHILSKGKMLYRAIVT--DNISSAIFY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDE 113
           GPPG+GKTTLA+++A     NF   S  V +   D+  ++   +D       + +LFIDE
Sbjct: 59  GPPGVGKTTLARIIANTTKANFYELSA-VNSGTSDVKKIIKEADDNQKFYSKKTILFIDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSR-----FTLIAATTRVGLL 166
           IHR +   ++ +  A+E   + L+    E P        LSR     F  ++       L
Sbjct: 118 IHRFNKAQQDSVLNAVEKGIIILIGATTENPYFEINNALLSRSMIFEFKNLSENNVKEAL 177

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
            N ++   G                         + V  E     A+ S G  R A   L
Sbjct: 178 NNAIKSPKGF--------------------GYLNIEVDPEVFDYFAVHSNGDIRKALNAL 217

Query: 227 RRVRDFAEVAHAK---TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIE 283
                 +     K   T               DK G    D                   
Sbjct: 218 DIAVRTSSRKEDKIFITADDAKECIQRKMTLYDKQGTSHYD------------------- 258

Query: 284 TISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           TISA +   R +  D    Y+ +       P    R +   A + +G   P
Sbjct: 259 TISAFIKSLRGSSPDAAVYYLGKMLDAGEDPMFIARRITIQASEDVGNADP 309


>gi|269960797|ref|ZP_06175168.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269834461|gb|EEZ88549.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 449

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 76/327 (23%), Positives = 121/327 (37%), Gaps = 42/327 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP T+E++ GQ       K    A +A    +  ++  GPPG GKTTLA+V A 
Sbjct: 16  PLAARMRPETIEQYIGQQHILGPGKPLRRALEAGH--IHSMILWGPPGTGKTTLAEVAAN 73

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAME 130
                    S  V +   ++ A +           R +LF+DE+HR +   ++   P +E
Sbjct: 74  YANAEVERVSA-VTSGVKEIRAAIEKARENKMAGRRTILFVDEVHRFNKSQQDAFLPHIE 132

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           D  +  +    E PS       LSR        RV  LT+  +D   + +     + E  
Sbjct: 133 DGTVTFIGATTENPSFELNNALLSR-------ARVYKLTSLDKDEISLALNQAISDKE-- 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
                RG   T     D     +A    G  R++   L  + D AE        +EI   
Sbjct: 184 -----RGLGNTPALFADNVLDRLAELVNGDARMSLNYLELLYDMAEDNAQGE--KEITLK 236

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  +A +K             ++R    G +  + ISA     R +  D    +  +  
Sbjct: 237 LLAEVAGEK-------------VSRFDNKGDIWYDLISAVHKSIRGSNPDAALYWSARMI 283

Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIPH 333
                P    R L+ IA + +G   P 
Sbjct: 284 AAGCDPLYITRRLLAIASEDVGNADPR 310


>gi|167768575|ref|ZP_02440628.1| hypothetical protein CLOSS21_03134 [Clostridium sp. SS2/1]
 gi|317497939|ref|ZP_07956247.1| ATPase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167710099|gb|EDS20678.1| hypothetical protein CLOSS21_03134 [Clostridium sp. SS2/1]
 gi|291560535|emb|CBL39335.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [butyrate-producing bacterium SSC/2]
 gi|316894772|gb|EFV16946.1| ATPase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 438

 Score =  160 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 82/347 (23%), Positives = 127/347 (36%), Gaps = 50/347 (14%)

Query: 2   MDREGLLSR-NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD        N  +E      +RP TL+E  GQ       K+   A KA  + +  ++F 
Sbjct: 1   MDLFEYARELNKDKESPLAGRMRPATLDEVVGQEHIIGKDKLLYRAIKA--DKISSIIFY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRDVLFIDEI 114
           GPPG GKTTLA+V+A     NF   +     K        D    L   + + +LFIDEI
Sbjct: 59  GPPGTGKTTLAKVIANTTKANFVQMNATTSGKKDMQEAVADAKESLGMYQKKTILFIDEI 118

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++ L P +ED  + L+    E P     +  +SR  +    +        L  
Sbjct: 119 HRFNKAQQDYLLPFVEDGTIILIGATTENPYFEVNQALISRSNVFELHSLDKEDIKKLIV 178

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R                T  ++G  + G  +TD+A   ++  + G  R A   +      
Sbjct: 179 R--------------AITDDEKGMGIYGATITDDALDFLSDMAEGDARSALNAIELGILT 224

Query: 233 AEVAHAKT--ITREIADAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAG 288
            E A      I  ++A   + R     DK G +  D+                   ISA 
Sbjct: 225 TEPAEDGKIHIDIDVAQECIQRRVTKYDKDGDNHYDV-------------------ISAF 265

Query: 289 LSEPRDAIEDLIEPYMIQQGFIQR--TPRGRLLMPIAWQHLGIDIPH 333
           +   R +  D    Y+ +        T   R +M  A + +G   P 
Sbjct: 266 IKSMRGSDPDAAIYYLARMIDAGESVTFIARRIMICASEDVGNADPQ 312


>gi|28870511|ref|NP_793130.1| ATPase, AAA family [Pseudomonas syringae pv. tomato str. DC3000]
 gi|28853759|gb|AAO56825.1| ATPase, AAA family [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 440

 Score =  160 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 79/338 (23%), Positives = 123/338 (36%), Gaps = 49/338 (14%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L SR    +    + LR   L+E+ GQ    ++ K   EA +    AL  ++F GPPG+G
Sbjct: 3   LFSREPIAQ-PLAARLRATNLDEYVGQEHVLAHGKPLREALEQ--GALHSMIFWGPPGVG 59

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLT-------NLEDRDVLFIDEIHRLSI 119
           KTTLA+++A+    +F + S  V+A   ++   +            R +LF+DE+HR + 
Sbjct: 60  KTTLARLLAKVSDAHFETVSA-VLAGVKEIRQAVEVAKQQAGQYGKRTILFVDEVHRFNK 118

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             ++   P +ED  L  +    E PS       LSR  +    +        L +R    
Sbjct: 119 SQQDAFLPYVEDGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVNRALTE 178

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                           RG     L ++DE    +   + G  R    LL    D AE   
Sbjct: 179 ---------------DRGLGQRKLTLSDEGFAMLMAAADGDGRRMLNLLENASDLAE--- 220

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
                 EI    L  L  D                R   GG    + ISA     R +  
Sbjct: 221 ---DGSEIDIELLQSLLGDSR-------------RRFDKGGEAFYDQISALHKSIRGSNP 264

Query: 298 DLIEPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
           D    +  +       P    R ++ +A + +G   P 
Sbjct: 265 DAALYWFARMIDGGCDPLYLARRVVRMASEDIGNADPR 302


>gi|330838519|ref|YP_004413099.1| AAA ATPase central domain protein [Selenomonas sputigena ATCC
           35185]
 gi|329746283|gb|AEB99639.1| AAA ATPase central domain protein [Selenomonas sputigena ATCC
           35185]
          Length = 442

 Score =  160 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 76/345 (22%), Positives = 131/345 (37%), Gaps = 52/345 (15%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M++E L  R V  +    + +RP++L ++ GQ       K+  +      + +  ++F G
Sbjct: 3   MEQESLFRREV--DLPLAARMRPKSLADYVGQQHLVGKGKMLRKLI--AEDKIFSMIFWG 58

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIH 115
           PPG+GKTTLA+++ARE    F   S  V +   ++  ++   E      +R +LF+DEIH
Sbjct: 59  PPGVGKTTLARIIARETKARFIDFSA-VTSGIKEIRTVMQEAEKNTAYGERTILFVDEIH 117

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P +E   + L+    E PS       LSR  +             L  R
Sbjct: 118 RFNKAQQDAFLPFVEKGSIILIGATTENPSFEINSALLSRCRVFVLKALQKEDILGLLRR 177

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                                G     + + D+    +A+ + G  R A   L  V    
Sbjct: 178 ---------------ALAAPEGFGNQKVEIADDLLEALAVFANGDARTALSTLEIVVLNG 222

Query: 234 EVAHAKTI-TREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
           EV       TRE  +  L + +   DK G +  +L                   ISA   
Sbjct: 223 EVEKDAIKVTRETVEQCLEKKSLLYDKKGEEHYNL-------------------ISALHK 263

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
             R++  D    ++ +       P    R ++  A + +G+  P 
Sbjct: 264 SMRNSDADASVYWLARMLEAGEDPLYIARRIVRFASEDVGLADPR 308


>gi|262402531|ref|ZP_06079092.1| ATPase AAA family [Vibrio sp. RC586]
 gi|262351313|gb|EEZ00446.1| ATPase AAA family [Vibrio sp. RC586]
          Length = 449

 Score =  160 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 67/342 (19%), Positives = 112/342 (32%), Gaps = 42/342 (12%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M    L            + +RP+T+E++ GQ       K    A +A    +  ++  G
Sbjct: 1   MSNYSLDFSGDEDFRPLAARMRPQTVEQYIGQQHILGPGKPLRRALEAGH--IHSMILWG 58

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIH 115
           PPG GKTTLA+V A          S  V +   ++ A +           R +LF+DE+H
Sbjct: 59  PPGTGKTTLAEVAANYANAEVERVSA-VTSGVKEIRAAIEKARENKLSGRRTILFVDEVH 117

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P +ED  +  +    E PS       LSR  +   T+            
Sbjct: 118 RFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNALLSRARVYKLTSLNQQ-------- 169

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                      +       +RG         D     +A    G  R++   L  + D A
Sbjct: 170 ------EILQALHQAIADTERGLGKVAAVFADNVLDRLAELVSGDARMSLNYLELLYDMA 223

Query: 234 EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
                     ++   A +                   ++R    G +  + ISA     R
Sbjct: 224 REDDQGRKQIDLPLLAEVAGEK---------------VSRFDNKGDIWYDLISAVHKSIR 268

Query: 294 DAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +  D    +  +       P    R L+ IA + +G   P 
Sbjct: 269 GSDPDAALYWAARMISAGCDPLYIARRLLAIASEDVGNADPR 310


>gi|300813628|ref|ZP_07093956.1| recombination factor protein RarA [Peptoniphilus sp. oral taxon 836
           str. F0141]
 gi|300512264|gb|EFK39436.1| recombination factor protein RarA [Peptoniphilus sp. oral taxon 836
           str. F0141]
          Length = 436

 Score =  160 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 79/346 (22%), Positives = 134/346 (38%), Gaps = 51/346 (14%)

Query: 2   MDREGL-LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M+   L + +N++ +      LRP+ LEEF GQ       K      K  ++ ++ +LF 
Sbjct: 1   MNLFDLSMEKNLNNKSPLADRLRPKNLEEFVGQDHIIGQGKFLSRLIK--SDRVNSLLFY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDE 113
           GPPG+GKTTLA+++A     NF   S  V +   +L  +L   +D         ++FIDE
Sbjct: 59  GPPGVGKTTLAKIIANLTNKNFVELSA-VTSNIKELREVLQKAQDDFKFSNIETIVFIDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++ L P +E   + L+    E P     K  LSR  ++          N L 
Sbjct: 118 IHRFNKTQQDALLPYVERGIIILIGATTENPYFEVNKALLSRLQILNLKALENKDMNKLI 177

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR-RVR 230
           DR                +   +G     + ++++A   +   S G  R     L   V 
Sbjct: 178 DR--------------AISDKIKGFGNLKINLSEQAREFLIRNSSGDGRFLLNSLEIAVL 223

Query: 231 DFAEVAHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAG 288
              +V +   +T ++ + ++ R     D  G +  D                   TISA 
Sbjct: 224 STDKVDNEVNLTLDVLENSMQRKKLLYDNGGNEHYD-------------------TISAF 264

Query: 289 LSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           +   R    D    Y+ +        +   R ++  A + +G   P
Sbjct: 265 IKSLRGTDPDAALYYLAKMLESGEDIKFIARRMIIFASEDVGNANP 310


>gi|295092672|emb|CBK78779.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [Clostridium cf. saccharolyticum K10]
          Length = 452

 Score =  160 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 82/343 (23%), Positives = 127/343 (37%), Gaps = 42/343 (12%)

Query: 2   MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD    +  +  +++A + S LRP TL+E  GQ       K+   A KA  + L  V+F 
Sbjct: 1   MDLFDYMRSSTMEKEAPLASRLRPSTLDEVVGQKHIIGKDKLLYRAIKA--DKLGSVIFY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRDVLFIDEI 114
           GPPG GKTTLA+V+A      F   +     K        +    L     + +LF+DEI
Sbjct: 59  GPPGTGKTTLARVIANTTSARFTQINATTAGKKDMEEAVKEAKDALGMYGQKTILFVDEI 118

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++ L P +ED  L L+    E P        +SR  +            PL+ 
Sbjct: 119 HRFNKSQQDYLLPFVEDGTLILIGATTENPYFEVNGALISRSRIFEL--------KPLEK 170

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
              I +              ++G  +    +  EA   +A  + G  R A   +      
Sbjct: 171 GDIIELMRR------AVADPEKGMGMYRAVLEQEAEEFLAEAANGDARAALNAVELGVLT 224

Query: 233 AEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEP 292
            E      I     D A+ +  I K               R   GG    +TISA +   
Sbjct: 225 TERREDGLI---HIDLAVAQECIQKRA------------VRYDKGGDNHYDTISAFIKSM 269

Query: 293 RDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           R +  D    Y+ +  +     +   R +M  A + +G   P 
Sbjct: 270 RGSDPDAAVYYLARMLYAGEDIKFIARRIMICASEDVGNADPQ 312


>gi|295110953|emb|CBL27703.1| Recombination protein MgsA [Synergistetes bacterium SGP1]
          Length = 446

 Score =  160 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 76/345 (22%), Positives = 119/345 (34%), Gaps = 52/345 (15%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M+   L     SQ     + +RPRTL+EF GQ        V     +   + +  ++F G
Sbjct: 1   MEERSLFEDEASQ--PLAARMRPRTLDEFVGQTHLLGPGCVLRRLIEE--DHVSSMIFWG 56

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIH 115
           PPG+GKTTLA V+A+     F + S  V +   ++ A++   E+      R ++F+DEIH
Sbjct: 57  PPGVGKTTLAGVIAQRTRAAFINFSA-VTSGIKEIRAVMQRAEEGRRLGGRTIVFVDEIH 115

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P +E   + L+    E PS       LSR  +             L  R
Sbjct: 116 RFNKAQQDAFLPFVERGSIVLIGATTENPSFEVNGALLSRCRVFVLKALTAEELAGLLSR 175

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                               RG       V  +    IA  + G  R A   L       
Sbjct: 176 ---------------ALSDPRGLGRYRAEVAPDMLNAIATFANGDARAALSTLEMAVLNG 220

Query: 234 EVAHAKTITREIADAALLRLA---IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
           E         E   A          DK G +  +L                   ISA   
Sbjct: 221 EPCGNGIRVTEEMLAQCTSRRSLLYDKGGEEHYNL-------------------ISALHK 261

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
             R++  D    ++ +       P    R ++  A + +G+  P 
Sbjct: 262 SMRNSDPDAAVYWLARMLEAGEDPLYVARRVLRFAGEDVGLADPK 306


>gi|52425506|ref|YP_088643.1| recombination factor protein RarA [Mannheimia succiniciproducens
           MBEL55E]
 gi|52307558|gb|AAU38058.1| unknown [Mannheimia succiniciproducens MBEL55E]
          Length = 446

 Score =  160 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 75/342 (21%), Positives = 124/342 (36%), Gaps = 53/342 (15%)

Query: 8   LSRNVSQED--ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           LS +  + D     + +RP TLE++ GQ     N K   +A +A       ++F GPPG 
Sbjct: 4   LSFDFVENDFKPLAARMRPTTLEQYCGQQHLLGNGKPLRKAIEAGHA--HSMIFWGPPGT 61

Query: 66  GKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GKTTLA+++A ++       S        I +A + A      + R +LF+DE+HR +  
Sbjct: 62  GKTTLAEIIAHKINAEVERISAVTSGIKEIREAIERAKQNRLADRRTILFVDEVHRFNKS 121

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++   P +ED  +  +    E PS       LSR  +    +                 
Sbjct: 122 QQDAFLPHIEDGTIIFIGATTENPSFELNSALLSRARVYILKSLTNQ------------- 168

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
               + +E      +RG     L + +     +A    G  R+A   L  + D A+ +  
Sbjct: 169 -DILHVLEQALADKERGLGNENLDLEEGILELLADYVHGDARLALNCLELMVDMADESEK 227

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMI-----ARNFGGGPVGIETISAGLSEPR 293
                                  ++D   LT +     AR    G    + ISA     R
Sbjct: 228 GK---------------------KIDRTLLTEVLGERQARFDKQGDRFYDLISAVHKSIR 266

Query: 294 DAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +  D    +  +       P    R L+ IA + +G   P 
Sbjct: 267 GSAPDAALYWYARIITAGGDPLYVARRLLAIASEDVGNADPR 308


>gi|302185003|ref|ZP_07261676.1| recombination factor protein RarA [Pseudomonas syringae pv.
           syringae 642]
          Length = 440

 Score =  160 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 79/338 (23%), Positives = 124/338 (36%), Gaps = 49/338 (14%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L SR    +    + LR   L+E+ GQ    ++ K   EA +    AL  ++F GPPG+G
Sbjct: 3   LFSREPIAQ-PLAARLRATNLDEYVGQEHVLAHGKPLREALEQ--GALHSMIFWGPPGVG 59

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLT-------NLEDRDVLFIDEIHRLSI 119
           KTTLA+++A+    +F + S  V+A   ++   +            R +LF+DE+HR + 
Sbjct: 60  KTTLAKLLAKVSDAHFETVSA-VLAGVKEIRQAVEVARQQAGQYGKRTILFVDEVHRFNK 118

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             ++   P +ED  L  +    E PS       LSR  +    +        L +R    
Sbjct: 119 SQQDAFLPYVEDGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVNRALTE 178

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                          +RG     L ++DE    +   + G  R    LL    D AE   
Sbjct: 179 ---------------ERGLGTRQLTLSDEGFAMLMAAADGDGRRMLNLLENASDLAE--- 220

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
                 EI    L  L  D                R   GG    + ISA     R +  
Sbjct: 221 ---DGSEIDIGLLQSLLGDSR-------------RRFDKGGEAFYDQISALHKSIRGSNP 264

Query: 298 DLIEPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
           D    +  +       P    R ++ +A + +G   P 
Sbjct: 265 DAALYWFARMIDGGCDPLYLARRVVRMASEDIGNADPR 302


>gi|225872629|ref|YP_002754086.1| ATPase, AAA family [Acidobacterium capsulatum ATCC 51196]
 gi|225792545|gb|ACO32635.1| ATPase, AAA family [Acidobacterium capsulatum ATCC 51196]
          Length = 448

 Score =  160 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 80/331 (24%), Positives = 127/331 (38%), Gaps = 51/331 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RPRTL+EF GQ       K      +    A   ++F GPPG+GKTTLA++VA 
Sbjct: 20  PLAERMRPRTLDEFRGQQHLLGLGKPLRVQIERDDAA--SMIFWGPPGVGKTTLAKIVAE 77

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130
               +F   S  V++   ++  ++ + E       R +LF+DEIHR +   ++   P +E
Sbjct: 78  TTHASFIEFSA-VLSGIKEIKQVMADAEKASTYGSRTILFVDEIHRFNRAQQDAFLPYVE 136

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
              + L+    E PS       LSR  +             L +R               
Sbjct: 137 RGTIRLIGATTENPSFEVNAALLSRCRVYTLQALTEDDLVSLLER--------------A 182

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK-TITREIAD 247
               +RG    G+    +A   IA  S G  R A   L      A+       ++RE+A 
Sbjct: 183 AADRERGLGNMGVTFDADALALIADYSSGDARNALNALEVAAKLAQSREENPRVSRELAQ 242

Query: 248 AALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM- 304
            AL +     DK G +  +L                   ISA     R++  D    ++ 
Sbjct: 243 EALQQRVLLYDKQGEEHYNL-------------------ISALHKSVRNSDPDAALYWLG 283

Query: 305 --IQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
             +Q G   R    R ++ +A + +G+  P 
Sbjct: 284 RMLQAGE-DRMYVARRVVRMAVEDVGLASPE 313


>gi|283798842|ref|ZP_06347995.1| ATPase, AAA family [Clostridium sp. M62/1]
 gi|291073529|gb|EFE10893.1| ATPase, AAA family [Clostridium sp. M62/1]
          Length = 452

 Score =  160 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 82/343 (23%), Positives = 127/343 (37%), Gaps = 42/343 (12%)

Query: 2   MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD    +  +  +++A + S LRP TL+E  GQ       K+   A KA  + L  V+F 
Sbjct: 1   MDLFDYMRSSTMEKEAPLASRLRPSTLDEVVGQKHIIGKDKLLYRAIKA--DKLGSVIFY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRDVLFIDEI 114
           GPPG GKTTLA+V+A      F   +     K        +    L     + +LF+DEI
Sbjct: 59  GPPGTGKTTLARVIANTTSARFTQINATTAGKKDMEEAVKEAKDALGMYGQKTILFVDEI 118

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++ L P +ED  L L+    E P        +SR  +            PL+ 
Sbjct: 119 HRFNKSQQDYLLPFVEDGTLILIGATTENPYFEVNGALISRSRIFEL--------KPLEK 170

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
              I +              ++G  +    +  EA   +A  + G  R A   +      
Sbjct: 171 GDIIELMRR------AVADHEKGMGMYRAVLEQEAEEFLAEAANGDARAALNAVELGVLT 224

Query: 233 AEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEP 292
            E      I     D A+ +  I K               R   GG    +TISA +   
Sbjct: 225 TERREDGLI---HIDLAVAQECIQKRA------------VRYDKGGDNHYDTISAFIKSM 269

Query: 293 RDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           R +  D    Y+ +  +     +   R +M  A + +G   P 
Sbjct: 270 RGSDPDAAVYYLARMLYAGEDIKFIARRIMICASEDVGNADPQ 312


>gi|224113871|ref|XP_002316599.1| predicted protein [Populus trichocarpa]
 gi|222859664|gb|EEE97211.1| predicted protein [Populus trichocarpa]
          Length = 553

 Score =  160 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 67/338 (19%), Positives = 118/338 (34%), Gaps = 38/338 (11%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
            +S ++     +RPRT+++  GQ    S   +   A   R   +  ++  GPPG GKT++
Sbjct: 121 TISNDEPLAERMRPRTIDDVIGQDLLLSQNSLLRSAI--RCSRIPSIILWGPPGTGKTSI 178

Query: 71  AQVV---ARELGVNFRST--SGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLS 118
           A+ +   A   G +         V     D      +          R VLF+DE+HR +
Sbjct: 179 ARAIVTSANSQGSSSYRFVSLSAVTCGVKDARDAFEDARKFKLKNSKRTVLFLDEVHRFN 238

Query: 119 IIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
              ++   P +ED  +  +    E PS   V   LSR  ++  +         +  R   
Sbjct: 239 KSQQDSFLPVIEDGTIVFIGATTENPSFHLVTPLLSRCRVLTLSPLKPHHVQTILKR--- 295

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
                   + D    + +     G+ V+++A   ++    G  R+A   L      A   
Sbjct: 296 -------AVNDPDKGLSKSLGSLGVDVSEDAVEFLSTNCDGDARVALNALEISAATAAAR 348

Query: 237 HAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAI 296
                   +A  AL      K       L Y      ++         ISA     R + 
Sbjct: 349 VGSDGDLRLASVALDDA---KEALQSKHLAYDRAGEEHY-------NLISALHKSMRGSD 398

Query: 297 EDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
            D    ++++       P    R L+  A + +G+  P
Sbjct: 399 ADASIYWLVRMLEGGEQPLYIARRLVRFASEDVGLADP 436


>gi|237800567|ref|ZP_04589028.1| recombination factor protein RarA [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331023427|gb|EGI03484.1| recombination factor protein RarA [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 440

 Score =  159 bits (403), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 79/338 (23%), Positives = 124/338 (36%), Gaps = 49/338 (14%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L SR    +    + LR   L+E+ GQ    ++ K   EA +    AL  ++F GPPG+G
Sbjct: 3   LFSREPIAQ-PLAARLRATNLDEYVGQEHVLAHGKPLREALEQ--GALHSMIFWGPPGVG 59

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLT-------NLEDRDVLFIDEIHRLSI 119
           KTTLA+++A+    +F + S  V+A   ++   +            R +LF+DE+HR + 
Sbjct: 60  KTTLARLLAKVSDAHFETVSA-VLAGVKEIRQAVEVARQQAGQYGKRTILFVDEVHRFNK 118

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             ++   P +ED  L  +    E PS       LSR  +    +        L +R    
Sbjct: 119 SQQDAFLPYVEDGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVNRALTE 178

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                          +RG     L ++DE    +   + G  R    LL    D AE   
Sbjct: 179 ---------------ERGLGRRRLTLSDEGFAILMSAADGDGRRMLNLLENASDLAE--- 220

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
                 EI    L  L  D                R   GG    + ISA     R +  
Sbjct: 221 ---DGSEIDIELLQSLLGDSR-------------RRFDKGGEAFYDQISALHKSIRGSNP 264

Query: 298 DLIEPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
           D    +  +       P    R ++ +A + +G   P 
Sbjct: 265 DAALYWFARMIDGGCDPLYLARRVVRMASEDIGNADPR 302


>gi|149190994|ref|ZP_01869255.1| hypothetical protein VSAK1_00065 [Vibrio shilonii AK1]
 gi|148835128|gb|EDL52104.1| hypothetical protein VSAK1_00065 [Vibrio shilonii AK1]
          Length = 452

 Score =  159 bits (403), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 75/342 (21%), Positives = 120/342 (35%), Gaps = 42/342 (12%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M                 + +RP  +E++ GQ       K    A +A    L  ++  G
Sbjct: 1   MSNFSFDFSGDEDFRPLAARMRPENVEQYIGQQHILGVGKPLRRALEAGQ--LHSMILWG 58

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIH 115
           PPG GKTTLA+V A          S  V +   D+ A +           R +LF+DE+H
Sbjct: 59  PPGTGKTTLAEVAANYADAEVERVSA-VTSGVKDIRAAIERARENKLAGKRTILFVDEVH 117

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P +ED  +  +    E PS       LSR  +   T+          D+
Sbjct: 118 RFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNALLSRARVYKLTSL---------DK 168

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
             I +      +E  +   +RG         D     +A    G  R++   L  + D A
Sbjct: 169 ADILLV-----LEQARDDEKRGLGTIAANFHDNVLERLAELVNGDARMSLNYLELLYDMA 223

Query: 234 EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
           E        ++I  A L  +A +K             + R    G +  + ISA     R
Sbjct: 224 EDNAQGE--KDITLALLAEVAGEK-------------VNRFDNKGDIWYDLISAVHKSIR 268

Query: 294 DAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +  D    +  +       P    R L+ IA + +G   P 
Sbjct: 269 GSNPDAALYWSARMIAAGCDPLYIARRLLAIASEDVGNADPR 310


>gi|163752528|ref|ZP_02159714.1| ATPase, AAA family protein [Shewanella benthica KT99]
 gi|161327583|gb|EDP98781.1| ATPase, AAA family protein [Shewanella benthica KT99]
          Length = 443

 Score =  159 bits (403), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 78/327 (23%), Positives = 118/327 (36%), Gaps = 47/327 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP  LE+F GQ       K   +A +A       +LF GPPG GKTTLA++VA 
Sbjct: 14  PLAARMRPEVLEQFIGQSHLLGEGKPLRKALEAGRA--HSMLFWGPPGTGKTTLAELVAH 71

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAM 129
               +    S  V +   ++   + + +        R +LF+DE+HR +   ++   P +
Sbjct: 72  YANAHVERISA-VTSGVKEIRTAIEHAKNVAESRGQRTLLFVDEVHRFNKSQQDAFLPFI 130

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ED  +  +    E PS       LSR        RV L+     D     +R    + + 
Sbjct: 131 EDGTVIFVGATTENPSFEINNALLSR-------ARVYLIKRLTNDEIIQIVRQALIDND- 182

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
                 RG     L + D  A ++A    G  R A  L+  + D      + T    I  
Sbjct: 183 ------RGLGKRQLKIPDAVAEKLANVCDGDARKALNLIELMSDMIADGESFTEQMIIEV 236

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           A       DK G    DL                   ISA     R +  D    +  + 
Sbjct: 237 AGQQLAGFDKNGDQFYDL-------------------ISAVHKSIRGSAPDAALYWFCRM 277

Query: 308 GFIQRTPR--GRLLMPIAWQHLGIDIP 332
                 P    R L+ IA + +G   P
Sbjct: 278 LEGGCDPLYIARRLLAIASEDIGNADP 304


>gi|83645244|ref|YP_433679.1| recombination factor protein RarA [Hahella chejuensis KCTC 2396]
 gi|83633287|gb|ABC29254.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [Hahella chejuensis KCTC 2396]
          Length = 448

 Score =  159 bits (403), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 68/330 (20%), Positives = 120/330 (36%), Gaps = 41/330 (12%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           +Q     + +RPR ++E+ GQ       K   +A +   + L  V+F GPPG+GKT+LA+
Sbjct: 15  AQYAPLAARMRPRVIDEYIGQTHLLDADKPLRKALER--DQLHSVIFWGPPGVGKTSLAR 72

Query: 73  VVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127
           +VA   G  F + S        I +    A   +    + ++F+DE+HR +   ++   P
Sbjct: 73  LVAGYTGAEFITLSAVQSGVKEIREVSQRARANSQSGRKTIVFVDEVHRFNKSQQDAFLP 132

Query: 128 AMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
            +E+     +    E PS       LSR  +             L  R            
Sbjct: 133 YVEEGAFVFIGATTENPSFELNNALLSRARVYPLKPLTIDDLTALLQR------------ 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
               +  + G   T  +   +    IA  + G  R A  +L  + D A+      I    
Sbjct: 181 --ALSDAENGLGQTSWSYDADLLRMIAEAANGDARQALNILETMSDLADPGEQGGILSRE 238

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
             A+++++                 + R   GG    + ISA     R +  D    +  
Sbjct: 239 LLASVMQV----------------SLKRFDKGGDAFYDQISALHKSVRGSNPDGALYWFA 282

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +       P    R ++ +A + +G   P 
Sbjct: 283 RMLNGGCDPLYVARRVVRMASEDIGNADPR 312


>gi|312127885|ref|YP_003992759.1| AAA ATPase central domain-containing protein [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777904|gb|ADQ07390.1| AAA ATPase central domain protein [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 441

 Score =  159 bits (403), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 81/347 (23%), Positives = 135/347 (38%), Gaps = 52/347 (14%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD    L     ++++ ++  LRP+ LEE  GQ    S  K      K   + L  ++  
Sbjct: 1   MDFFQYLGEKRLKKESPLAYKLRPKRLEEIIGQEHILSPGKPLYNLIK--NDRLTSIILY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDE 113
           GPPG GKTT+A V+A   G  F++ +   IA   D+  ++   +        + +LFIDE
Sbjct: 59  GPPGTGKTTIAHVIANATGKTFKTINA-TIAGVNDIKKIIEEAKIEFSQTGRKTILFIDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR + + ++ L P++E+  + L+    E P     K  +SR  +            PL+
Sbjct: 118 IHRFNKLQQDALLPSVEEGIIILIGATTENPFYEVNKALVSRSLVFELF--------PLK 169

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
           +   + I      IE   +  + G     + + D+A   IA  S G  R+A  +L  V  
Sbjct: 170 EEDILKI------IERAISDKENGLGELNIQIEDDAKKLIAKLSGGDARVALNILEAVVY 223

Query: 232 FAEVAHAKTITREIADAALLRLA----IDKMGFDQLDLRYLTMIARNFGGGPVGIETISA 287
            ++      I         L        D  G    D                   TISA
Sbjct: 224 SSQAQDDGKIYISQESVINLSNRKTALYDATGDMHYD-------------------TISA 264

Query: 288 GLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
            +   R +  D    Y+ +        +   R L+ +A + +G+  P
Sbjct: 265 FIKSVRGSDPDAALFYLAKMLDSGEDIKFIARRLIILAAEDIGLADP 311


>gi|302671634|ref|YP_003831594.1| recombination factor protein RarA [Butyrivibrio proteoclasticus
           B316]
 gi|302396107|gb|ADL35012.1| recombination factor protein RarA [Butyrivibrio proteoclasticus
           B316]
          Length = 440

 Score =  159 bits (403), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 81/348 (23%), Positives = 137/348 (39%), Gaps = 52/348 (14%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD    + +N  ++++ ++  +RPRTL+E  GQ    +  K+   A  A  + L  ++  
Sbjct: 1   MDLFDYMRQNNKEKESPLAARMRPRTLDEVVGQQHIIARDKLLYRAISA--DKLSSIILY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDE 113
           GPPG GKTTLA+V+A      F   +   IA   D+  ++   +D       + +LFIDE
Sbjct: 59  GPPGTGKTTLAKVIAGTTKAEFMQINA-TIAGKKDMEDVVNKAKDNLGMYGKKTILFIDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++ L P +ED  + L+    E P        +SR       + +  L     
Sbjct: 118 IHRFNKGQQDYLLPFVEDGTVILIGATTENPYFEVNGALISR-------SIIFELKPLTA 170

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
           D   + +     + E       RG       +  +AA  +A  + G  R A   +     
Sbjct: 171 DDIKVLLNRAVTDNE-------RGMGAYKAVLETDAADFLADLADGDARHALNAIELGIL 223

Query: 232 FAEVAHAK--TITREIADAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISA 287
               +      IT+E+A+  + +     DK G +  D                   TISA
Sbjct: 224 TTPRSEDGLIHITKEVAEECIQKKVARYDKDGDNHYD-------------------TISA 264

Query: 288 GLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +   R +  D    Y+ +       P+   R +M  A + +G   P 
Sbjct: 265 FIKSMRGSDPDAAVYYLARMLNAGEDPKFIVRRMMVCASEDVGNADPQ 312


>gi|118586319|ref|ZP_01543772.1| ATPase, AAA family [Oenococcus oeni ATCC BAA-1163]
 gi|118433245|gb|EAV39958.1| ATPase, AAA family [Oenococcus oeni ATCC BAA-1163]
          Length = 467

 Score =  159 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 76/349 (21%), Positives = 128/349 (36%), Gaps = 60/349 (17%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M+++  L   N        S +RP+TLE+F GQ       KV  E  +   + +  ++F 
Sbjct: 23  MIEQASLFENNSENGRPLASRVRPQTLEQFVGQENLLGPGKVLRELIEK--DQISSMIFW 80

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEI 114
           GPPG+GKTTLA+++A      F + S    +   ++  ++ + E+      R ++FIDEI
Sbjct: 81  GPPGVGKTTLAEIIAHRSKAKFITFSAAT-SGIKEIRKIMKDAENNRQFGVRTIVFIDEI 139

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSR-----FTLIAATTRVGLLT 167
           HR +   ++   P +E   + L+    E PS       LSR        + ++  V LL 
Sbjct: 140 HRFNKAQQDSFLPYVEKGSIILIGATTENPSFEINSALLSRSKVFVLRQLKSSDIVKLLE 199

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
           N L++  G   +        L+ I                    A  + G  R A   L 
Sbjct: 200 NALKNPHGFAKQKISISSRTLQLI--------------------ADFANGDARTALNTLE 239

Query: 228 RVRDFAEVAHAKTITREIADAAL---LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIET 284
                       T  +      L     L  DK G +  ++                   
Sbjct: 240 MAVLNGHHTKNGTEIKTEDLKQLITKKSLLYDKHGEEHYNI------------------- 280

Query: 285 ISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
           ISA     R++  D    ++ +       P    R L+  A + +G+  
Sbjct: 281 ISALHKSMRNSDVDAAIYWLARMLESGEDPLYVARRLIRFASEDIGLAD 329


>gi|113970302|ref|YP_734095.1| recombination factor protein RarA [Shewanella sp. MR-4]
 gi|113884986|gb|ABI39038.1| Recombination protein MgsA [Shewanella sp. MR-4]
          Length = 443

 Score =  159 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 79/338 (23%), Positives = 124/338 (36%), Gaps = 48/338 (14%)

Query: 8   LSRNVSQE-DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           LS N + +     + +RPRT+ E+ GQ       +   +A +A       ++  GPPG G
Sbjct: 4   LSFNFAPDFRPLAARMRPRTIAEYMGQAHLLGEGQPLRQALEAGRA--HSMMLWGPPGTG 61

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSI 119
           KTTLA+++A     +    S  V +   D+ A +   +        R +LF+DE+HR + 
Sbjct: 62  KTTLAELIAHYSNAHVERISA-VTSGVKDIRAAIEQAQAVAQSRGQRTLLFVDEVHRFNK 120

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             ++   P +ED  +  +    E PS       LSR        RV L+    QD     
Sbjct: 121 SQQDAFLPFIEDGTVIFIGATTENPSFEINNALLSR-------ARVYLIKRLSQDEIVHI 173

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
           I     + E       RG     L +  +   ++A    G  R A  LL  + D    + 
Sbjct: 174 ITQALTDTE-------RGLGQRQLVMPTDVLNKLAQLCDGDARKALNLLELMSDMVADSG 226

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
           + T    +  A       DK G    DL                   ISA     R +  
Sbjct: 227 SFTTEMLVQVAGHQVAGFDKNGDQFYDL-------------------ISAVHKSIRGSAP 267

Query: 298 DLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           D    +  +       P    R L+ IA + +G   P+
Sbjct: 268 DAALYWFCRILEGGGDPLYVARRLLAIASEDVGNADPN 305


>gi|71274773|ref|ZP_00651061.1| AAA ATPase, central region [Xylella fastidiosa Dixon]
 gi|71901409|ref|ZP_00683500.1| AAA ATPase, central region [Xylella fastidiosa Ann-1]
 gi|170729983|ref|YP_001775416.1| recombination factor protein RarA [Xylella fastidiosa M12]
 gi|71164505|gb|EAO14219.1| AAA ATPase, central region [Xylella fastidiosa Dixon]
 gi|71728814|gb|EAO30954.1| AAA ATPase, central region [Xylella fastidiosa Ann-1]
 gi|167964776|gb|ACA11786.1| ATPase [Xylella fastidiosa M12]
          Length = 455

 Score =  159 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 73/327 (22%), Positives = 124/327 (37%), Gaps = 45/327 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RPRTL E  GQ    +  +    A    +  +  ++  GPPG GKTTL+ ++A 
Sbjct: 22  PLAERMRPRTLHEMVGQKRLLAPDRALHRAV--ASGNVHSMILWGPPGCGKTTLSLLLAH 79

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAME 130
            +   FR+ S  V++   ++  +L           R VLF+DE+HR + + ++   P +E
Sbjct: 80  YIDAEFRAVSA-VLSGLPEVRQILAEAAQRFSEGRRTVLFVDEVHRFNKMQQDAFLPHIE 138

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
              +  +    E PS       LSR        RV +L         + ++    + E  
Sbjct: 139 RGSIIFVGATTENPSFELNSALLSRC-------RVHVLEAVSSQDIVVALQRALQDTE-- 189

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
                RG     + V++ +  EIA  + G  R A  LL    + A+    + IT ++   
Sbjct: 190 -----RGLGGQKIEVSEASLLEIAKAADGDVRRALTLLEIAAELAQ-DEDEQITADLLSQ 243

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L             D        R    G    + ISA     R +  D    ++++  
Sbjct: 244 VLA------------DRS-----RRFDKRGEQFYDQISALHKSVRSSNPDAALYWLLRML 286

Query: 309 FIQRTP--RGRLLMPIAWQHLGIDIPH 333
                P    R L  +A + +G+  P 
Sbjct: 287 DGGCDPIYLARRLTRMAIEDIGLADPR 313


>gi|323495033|ref|ZP_08100122.1| recombination factor protein RarA [Vibrio brasiliensis LMG 20546]
 gi|323310690|gb|EGA63865.1| recombination factor protein RarA [Vibrio brasiliensis LMG 20546]
          Length = 428

 Score =  159 bits (402), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 67/322 (20%), Positives = 113/322 (35%), Gaps = 42/322 (13%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP TLE++ GQ       K    + +A    +  ++  GPPG GKTTLA+V A      
Sbjct: 1   MRPETLEQYIGQQHILGAGKPLRRSLEAGH--IHSMILWGPPGTGKTTLAEVAANYANAE 58

Query: 82  FRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
               S  V +   ++ A +           R +LF+DE+HR +   ++   P +ED  + 
Sbjct: 59  VERVSA-VTSGVKEIRAAIEKAREYKLAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVT 117

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
            +    E PS       LSR  +   T+                       +E      +
Sbjct: 118 FIGATTENPSFELNNALLSRARVYKLTSLAKEDIR--------------LALEQAINDKE 163

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           RG     +   D     ++    G  R++   L  + D A+        ++    ALL  
Sbjct: 164 RGLGAVEVEFVDNVLDRLSELVNGDARMSLNYLELLYDMAQEDAQG---KKQITLALLAE 220

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
              +             ++R    G +  + ISA     R +  D    +  +       
Sbjct: 221 VAGEK------------VSRFDNKGDIWYDLISAVHKSIRGSNPDAALYWAARMIAAGCD 268

Query: 314 PR--GRLLMPIAWQHLGIDIPH 333
           P    R L+ IA + +G   P 
Sbjct: 269 PLYIARRLLAIASEDIGNADPR 290


>gi|312876940|ref|ZP_07736915.1| AAA ATPase central domain protein [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796255|gb|EFR12609.1| AAA ATPase central domain protein [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 441

 Score =  159 bits (402), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 80/347 (23%), Positives = 135/347 (38%), Gaps = 52/347 (14%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD    L     ++++ ++  LRP+ LEE  GQ    S  K      K   + L  ++  
Sbjct: 1   MDFFQYLGEKRLKKESPLAYKLRPKRLEEIVGQEHILSPGKPLYNLIK--NDRLTSIILY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDE 113
           GPPG GKTT+A V+A   G  F++ +   IA   D+  ++   +        + +LFIDE
Sbjct: 59  GPPGTGKTTIAHVIANATGKTFKTINA-TIAGVNDIKKIIEEAKIEFSQTGRKTILFIDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR + + ++ L P++E+  + L+    E P     K  +SR  +            PL+
Sbjct: 118 IHRFNKLQQDALLPSVEEGIIILIGATTENPFYEVNKALVSRSLVFELF--------PLK 169

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
           +   + I      IE   +  + G     + + ++A   IA  S G  R+A  +L  V  
Sbjct: 170 EEDILKI------IERAISDKENGLGELNIQIEEDAKKLIAKLSGGDARVALNILEAVVY 223

Query: 232 FAEVAHAKTITREIADAALLRLA----IDKMGFDQLDLRYLTMIARNFGGGPVGIETISA 287
            ++      I         L        D  G    D                   TISA
Sbjct: 224 SSQARDDGKIYISQESVINLSNRKTAIYDATGDMHYD-------------------TISA 264

Query: 288 GLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
            +   R +  D    Y+ +        +   R L+ +A + +G+  P
Sbjct: 265 FIKSVRGSDPDAALFYLAKMLDSGEDIKFIARRLIILAAEDIGLADP 311


>gi|319787147|ref|YP_004146622.1| ATPase AAA [Pseudoxanthomonas suwonensis 11-1]
 gi|317465659|gb|ADV27391.1| AAA ATPase central domain protein [Pseudoxanthomonas suwonensis
           11-1]
          Length = 436

 Score =  159 bits (402), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 76/326 (23%), Positives = 122/326 (37%), Gaps = 43/326 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RPR+L+E  GQ    +       A +     +  ++  GPPG GKTTL+ ++A+
Sbjct: 3   PLAERMRPRSLDEMVGQRRLLAPGSALRRAVE--GGRVHSMILWGPPGCGKTTLSLLLAQ 60

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
                FR+ S      P + +    A    +   R VLF+DE+HR +   ++   P +E 
Sbjct: 61  YADAEFRAISAVLSGLPEVRQVLAEAGQRFDAGRRTVLFVDEVHRFNKTQQDAFLPHIER 120

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             +  +    E PS       LSR        RV +L     D     ++    + E   
Sbjct: 121 GSIVFVGATTENPSFELNSALLSRC-------RVHVLEAVSADDIVDALKRALDDEE--- 170

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
               RG    G+ V + A  EIA  + G  R A  LL    + A           I ++ 
Sbjct: 171 ----RGLGGQGIVVEEGALREIAGAADGDVRRALTLLEIAAELAADEGG-----HITEST 221

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           LL++  D+               R   GG    + ISA     R +  D    ++ +   
Sbjct: 222 LLQVLADRT-------------RRFDKGGEQFYDQISALHKSVRSSNPDAAVYWLARMLD 268

Query: 310 IQRTP--RGRLLMPIAWQHLGIDIPH 333
               P    R L  +A + +G+  P 
Sbjct: 269 GGCDPAYLARRLTRMAVEDIGLADPR 294


>gi|91200409|emb|CAJ73456.1| similar to ATPase related to the helicase subunit of the Holliday
           junction resolvase [Candidatus Kuenenia stuttgartiensis]
          Length = 478

 Score =  159 bits (402), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 78/343 (22%), Positives = 130/343 (37%), Gaps = 61/343 (17%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           R+ +++      +RPR L EF GQ       K+     + +   L  ++F GPPG+GKTT
Sbjct: 43  RDDTKKSPLADRMRPRNLSEFVGQEHLVGEGKILRSFIENKE--LVSLIFWGPPGVGKTT 100

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVE 122
           LA ++A  +  +F + S  V++   ++ A++   ++       R VLF+DEIHR +   +
Sbjct: 101 LALIIANAMNAHFITFSA-VLSGVKEIRAVIEEAKEQLKFNGKRTVLFVDEIHRFNKAQQ 159

Query: 123 EILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAA-----TTRVGLLTNPLQDRFG 175
           +     +ED  + L+    E PS       LSR  ++       +    +L N L DR  
Sbjct: 160 DSFLHHVEDGTITLIGATTENPSFEVNSPLLSRCKVLVLEPLRKSHITAILLNALSDR-- 217

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF--A 233
                            + G     + +  +    IA  S G  R A   L         
Sbjct: 218 -----------------ESGLGGQKIEIPQDVIDFIAEFSHGEARAALNTLETAIMLVRP 260

Query: 234 EVAHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
                + +T EIA  A+ R A   DK G +                       ISA +  
Sbjct: 261 NEKDIRPVTMEIAMEAMQRKALLYDKGGEEHY-------------------NVISAFIKS 301

Query: 292 PRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
            R +  D    ++ +       P    R ++  A + +G   P
Sbjct: 302 MRGSDPDAALYWLARMLEAGEDPLFIVRRMVIFAAEDIGNADP 344


>gi|292487820|ref|YP_003530695.1| hypothetical protein EAMY_1337 [Erwinia amylovora CFBP1430]
 gi|292899048|ref|YP_003538417.1| ATPase [Erwinia amylovora ATCC 49946]
 gi|291198896|emb|CBJ46006.1| putative ATPase [Erwinia amylovora ATCC 49946]
 gi|291553242|emb|CBA20287.1| Uncharacterized protein ycaJ [Erwinia amylovora CFBP1430]
          Length = 447

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 83/342 (24%), Positives = 125/342 (36%), Gaps = 42/342 (12%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M +     SRN  Q     + +RPRTL E+ GQ    +  K    A +A    L  ++  
Sbjct: 1   MSNLSLDFSRNEFQ--PLAARMRPRTLAEYIGQRHLLAAWKPLPRAIEAGQ--LHSMILW 56

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIH 115
           GPPG GKTTLA+++      +    S        I +A + A    +   R +LF+DE+H
Sbjct: 57  GPPGTGKTTLAEIIGHYGQADVERISAVTSGVKDIREAIERARQNRHAGRRTILFVDEVH 116

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P +ED  +  +    E PS       LSR        RV LL +   D 
Sbjct: 117 RFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSR-------ARVYLLKSLTSDD 169

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
               +     + E       RG     + + +     IA    G  R A   L  + D A
Sbjct: 170 IATVLDQAMQDGE-------RGYGKDNILLPENTRDMIAQLVNGDARRALNTLEMMADMA 222

Query: 234 EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
           EV       RE+    L  +  ++              AR    G    + ISA     R
Sbjct: 223 EVNAKGK--RELTPQLLNEVCGERS-------------ARFDNKGDRFYDLISALHKSVR 267

Query: 294 DAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +  D    +  +       P    R L+ IA + +G   P 
Sbjct: 268 GSAPDAALYWYARIITAGGDPLYVARRLLAIASEDIGNADPR 309


>gi|283478929|emb|CAY74845.1| Uncharacterized protein ycaJ [Erwinia pyrifoliae DSM 12163]
          Length = 428

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 75/321 (23%), Positives = 117/321 (36%), Gaps = 40/321 (12%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRTL E+ GQ    +  K    A +AR   L  ++  GPPG GKTTLA+++ R    +
Sbjct: 1   MRPRTLAEYIGQQHLLAAGKPLPRAIEARH--LHSMILWGPPGTGKTTLAEIIGRYGQAD 58

Query: 82  FRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
               S        I +A + A    +   R +LF+DE+HR +   ++   P +ED  +  
Sbjct: 59  VERISAVTSGVKEIREAIERARQNRHAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 118

Query: 137 M--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           +    E PS       LSR  +    +        + D                    +R
Sbjct: 119 VGATTENPSFELNSALLSRARVYLLKSLTSEDIATVLD--------------QAMQDGER 164

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
           G     + + +     IA    G  R A   L  + D AEV       RE+    L  ++
Sbjct: 165 GYGNDNIVLPENTRNMIAQLVNGDARRALNTLEMMADMAEVNGKGK--RELTPQLLNEVS 222

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
            ++              AR    G    + ISA     R +  D    +  +       P
Sbjct: 223 GERS-------------ARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDP 269

Query: 315 R--GRLLMPIAWQHLGIDIPH 333
               R L+ IA + +G   P 
Sbjct: 270 LYVARRLLAIASEDVGNADPR 290


>gi|330836757|ref|YP_004411398.1| Recombination protein MgsA [Spirochaeta coccoides DSM 17374]
 gi|329748660|gb|AEC02016.1| Recombination protein MgsA [Spirochaeta coccoides DSM 17374]
          Length = 763

 Score =  159 bits (401), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 71/331 (21%), Positives = 122/331 (36%), Gaps = 39/331 (11%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           S        +RPRTL+E+ GQ       ++   A +A  + L  V+F GPPG GKTTLA+
Sbjct: 12  SDAQPLAYRMRPRTLDEYIGQEHIVGPGRLLRRAIQA--DQLSSVIFYGPPGTGKTTLAR 69

Query: 73  VVARELGVNFRSTSGPVIAKAGDL-------AALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           V+A     +F + +  V++   +L          L++ + R +LF+DE+HR +   ++ L
Sbjct: 70  VIANTTKSHFVTLNA-VLSGVKELRYEIEQARERLSHWQQRTILFVDEVHRWNKSQQDAL 128

Query: 126 YPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
            P +E+    L+    E P        +SR  +    +        L D   + I     
Sbjct: 129 LPWVENGTFILIGATTENPYFEVNAALVSRSRIFQLVS--------LTDNDLLDIARQCL 180

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
             +D      RG     ++    A   +   S G  R     L+   +            
Sbjct: 181 GDKD------RGYGAYDVSFEAGALEHLIDVSNGDARSLLNALQLAVETTPAIWPPPPGT 234

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           EI  +        +      D             G    + ISA +   R +  D    +
Sbjct: 235 EIYISQQTTEESIQKKVVLYDKE-----------GDYHFDIISAFIKSLRGSDPDAALYW 283

Query: 304 MIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           + +       PR   R ++  A + +G+  P
Sbjct: 284 LARMVRAGEDPRFIFRRMLISACEDIGLADP 314


>gi|325278997|ref|YP_004251539.1| AAA ATPase central domain-containing protein [Odoribacter
           splanchnicus DSM 20712]
 gi|324310806|gb|ADY31359.1| AAA ATPase central domain protein [Odoribacter splanchnicus DSM
           20712]
          Length = 423

 Score =  159 bits (401), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 79/333 (23%), Positives = 125/333 (37%), Gaps = 53/333 (15%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           +       LRP+TL+++ GQ       KV  +  +  +  +   +  GPPG+GKTTLA +
Sbjct: 2   ENKPLAERLRPKTLDDYIGQQHLVGKGKVLRKMIE--SGVVSSFILWGPPGVGKTTLAMI 59

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILY 126
           VA +L   F   S  V +   D+  ++   E          +LFIDEIHR S   ++ L 
Sbjct: 60  VAEQLKRPFYVLSA-VSSGVKDVREVIQKAESQRFFNTPNPILFIDEIHRFSKAQQDSLL 118

Query: 127 PAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
            A+E   + L+    E PS   +   LSR  +    ++       L DR    +  +FY 
Sbjct: 119 AAVEKGTVTLIGATTENPSFEVISPLLSRCQVYVLKSQEKADLEGLIDR---AVTTDFYL 175

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            E  K IV +  +                 S G  R    +L  V + A+      I  +
Sbjct: 176 KE--KNIVVKEKEAL------------ISFSGGDARKLLNILELVVN-AQPGPEILIDND 220

Query: 245 IADAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
                L       DK G    D+                   ISA +   R +  +    
Sbjct: 221 TVRKELQENPLMYDKDGEQHYDI-------------------ISAMIKSIRGSDPNAALY 261

Query: 303 YMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           YM +       P+   R L+  A + +G+  P+
Sbjct: 262 YMARMLEGGEDPKFIARRLLISASEDIGLANPN 294


>gi|240143952|ref|ZP_04742553.1| ATPase, AAA family [Roseburia intestinalis L1-82]
 gi|257203986|gb|EEV02271.1| ATPase, AAA family [Roseburia intestinalis L1-82]
 gi|291534968|emb|CBL08080.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [Roseburia intestinalis M50/1]
 gi|291539530|emb|CBL12641.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [Roseburia intestinalis XB6B4]
          Length = 443

 Score =  159 bits (401), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 77/343 (22%), Positives = 122/343 (35%), Gaps = 44/343 (12%)

Query: 2   MDREGLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD    +     + E    S LRP TL+E  GQ       K+   A KA  + L  ++  
Sbjct: 1   MDLFEYMREQKKETESPLASRLRPTTLDEMVGQQHIIGKDKLLYRAIKA--DKLSSIILY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDE 113
           GPPG GKTTLA+V+A      F   +    A   D+  ++   +        + +LFIDE
Sbjct: 59  GPPGTGKTTLAKVIANSTSAEFLQMNA-TSAGKKDMEDVIAKAKNNMGMFGKKTILFIDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++ L P +ED  + L+    E P        LSR                  
Sbjct: 118 IHRFNKGQQDYLLPFVEDGTIILIGATTENPYFEVNGALLSR------------------ 159

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
               I   L   E ED+KT++ R    T   +    A            I+    R    
Sbjct: 160 ---SIIFELKSLEKEDIKTLILRAVNDTQKGMGAYHAVIDEDALDFLADISNGDARAALT 216

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
             E+     +T E +   L+ +                 + +    G    +T+SA +  
Sbjct: 217 AVEL---GILTTERSGDGLIHIT-----LSVASECIQKRVVKYDKSGDNHYDTVSAFIKS 268

Query: 292 PRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
            R +  D    Y+ +  +     +   R +M  A + +    P
Sbjct: 269 MRGSDPDAAVYYLARMLYAGEDIKFIARRIMICASEDVSNADP 311


>gi|262165385|ref|ZP_06033122.1| ATPase AAA family [Vibrio mimicus VM223]
 gi|262025101|gb|EEY43769.1| ATPase AAA family [Vibrio mimicus VM223]
          Length = 449

 Score =  159 bits (401), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 67/342 (19%), Positives = 115/342 (33%), Gaps = 42/342 (12%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M    L            + +RP+T+E++ GQ       K    A +A    +  ++  G
Sbjct: 1   MSNYSLDFSGDEDFRPLAARMRPQTVEQYIGQQHILGPGKPLRRALEAGH--IHSMILWG 58

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIH 115
           PPG GKTTLA+V A          S  V +   ++ A +           R +LF+DE+H
Sbjct: 59  PPGTGKTTLAEVAANYANAEVERVSA-VTSGVKEIRAAIEKARENKLSGRRTILFVDEVH 117

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P +ED  +  +    E PS       LSR  +   T+            
Sbjct: 118 RFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNALLSRARVYKLTS------------ 165

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
             +  +     ++      +RG         D     +A    G  R++   L  + D A
Sbjct: 166 --LTQQEIQQALQQAIADSERGLGKVVAVFVDNVLDRLAELVNGDARMSLNYLELLYDMA 223

Query: 234 EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
                     ++   A +                   ++R    G +  + ISA     R
Sbjct: 224 REDDQGRKLIDLPLLAEVAGEK---------------VSRFDNKGDIWYDLISAVHKSIR 268

Query: 294 DAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +  D    +  +       P    R L+ IA + +G   P 
Sbjct: 269 GSDPDAALYWAARMISAGCDPLYIARRLLAIASEDVGNADPR 310


>gi|269214884|ref|ZP_06158888.1| holliday junction DNA helicase RuvB [Neisseria lactamica ATCC
           23970]
 gi|269208795|gb|EEZ75250.1| holliday junction DNA helicase RuvB [Neisseria lactamica ATCC
           23970]
          Length = 131

 Score =  159 bits (401), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 71/129 (55%), Positives = 93/129 (72%)

Query: 203 VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQ 262
           +++E A EIA RSRGTPRIA RLLRRVRDFA+V +  TI   IADAAL  L +D  G D 
Sbjct: 1   MSEEGAEEIAKRSRGTPRIANRLLRRVRDFADVKNNGTIDGGIADAALSMLDVDAQGLDV 60

Query: 263 LDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPI 322
           +D ++L  +   FGGGPVG++ ++A + E  D IED+IEPY+IQQGF+QRTPRGR+    
Sbjct: 61  MDRKFLEAVLHKFGGGPVGLDNVAAAIGESTDTIEDVIEPYLIQQGFLQRTPRGRMATER 120

Query: 323 AWQHLGIDI 331
           A+ H G+ +
Sbjct: 121 AYLHFGLPV 129


>gi|84394177|ref|ZP_00992908.1| hypothetical protein V12B01_03078 [Vibrio splendidus 12B01]
 gi|84375197|gb|EAP92113.1| hypothetical protein V12B01_03078 [Vibrio splendidus 12B01]
          Length = 449

 Score =  159 bits (401), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 80/342 (23%), Positives = 119/342 (34%), Gaps = 42/342 (12%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M    L            + +RP T+E++ GQ       K    A +A    +  ++  G
Sbjct: 1   MSNYSLDFAGDEDFRPLAARMRPETVEQYIGQQHILGPGKPLRRALEAGH--IHSMILWG 58

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDL------AALLTNLEDRDVLFIDEIH 115
           PPG GKTTLA+V A          S  V +   D+      A        R +LF+DE+H
Sbjct: 59  PPGTGKTTLAEVAANYANAEVERVSA-VTSGVKDIRIAIEKARENKQAGRRTILFVDEVH 117

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P +ED  +  +    E PS       LSR        RV  LT+   D 
Sbjct: 118 RFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNALLSR-------ARVYKLTSLHTDD 170

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
             + IR             QRG         D     +A    G  R++   L  + D A
Sbjct: 171 ISLVIRQAI-------EDKQRGLGDVTADFADNVLDRLAELVNGDARMSLNYLELLYDMA 223

Query: 234 EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
           E        + I    L  +A +K             +AR    G +  + ISA     R
Sbjct: 224 EDNDKGE--KAITLQLLAEVAGEK-------------VARFDNKGDIWYDLISAVHKSIR 268

Query: 294 DAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +  D    +  +       P    R L+ IA + +G   P 
Sbjct: 269 GSNPDAALYWSARMIAAGCDPLYIVRRLLAIASEDIGNADPR 310


>gi|116491207|ref|YP_810751.1| recombination factor protein RarA [Oenococcus oeni PSU-1]
 gi|116091932|gb|ABJ57086.1| Recombination protein MgsA [Oenococcus oeni PSU-1]
          Length = 445

 Score =  159 bits (401), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 76/349 (21%), Positives = 128/349 (36%), Gaps = 60/349 (17%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M+++  L   N        S +RP+TLE+F GQ       KV  E  +   + +  ++F 
Sbjct: 1   MIEQASLFENNSENGRPLASRVRPQTLEQFVGQENLLGPGKVLRELIEK--DQISSMIFW 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEI 114
           GPPG+GKTTLA+++A      F + S    +   ++  ++ + E+      R ++FIDEI
Sbjct: 59  GPPGVGKTTLAEIIAHRSKAKFITFSAAT-SGIKEIRKIMKDAENNRQFGVRTIVFIDEI 117

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSR-----FTLIAATTRVGLLT 167
           HR +   ++   P +E   + L+    E PS       LSR        + ++  V LL 
Sbjct: 118 HRFNKAQQDSFLPYVEKGSIILIGATTENPSFEINSALLSRSKVFVLRQLKSSDIVKLLE 177

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
           N L++  G   +        L+ I                    A  + G  R A   L 
Sbjct: 178 NALKNPHGFAKQKISISSRTLQLI--------------------ANFANGDARTALNTLE 217

Query: 228 RVRDFAEVAHAKTITREIADAAL---LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIET 284
                       T  +      L     L  DK G +  ++                   
Sbjct: 218 MAVLNGHHTKNGTEIKTEDLKQLITKKSLLYDKHGEEHYNI------------------- 258

Query: 285 ISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
           ISA     R++  D    ++ +       P    R L+  A + +G+  
Sbjct: 259 ISALHKSMRNSDVDAAIYWLARMLESGEDPLYVARRLIRFASEDIGLAD 307


>gi|168701195|ref|ZP_02733472.1| recombination factor protein RarA [Gemmata obscuriglobus UQM 2246]
          Length = 449

 Score =  159 bits (401), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 82/343 (23%), Positives = 136/343 (39%), Gaps = 40/343 (11%)

Query: 2   MDR-EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD  + L   N  +     + +RPRTL+E+ GQ    +  K+      A  + L+ ++F 
Sbjct: 1   MDLFDDLRDENRLRARPLAARMRPRTLDEYVGQTHFLAPGKLLRRMLLA--DRLNSLIFY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLT-------NLEDRDVLFIDE 113
           GPPG GKT LA V+A+     F+  +  V A   D+  LL         L +R +LF+DE
Sbjct: 59  GPPGCGKTALAHVIAKHTKSRFKPLNA-VAAGTKDVRELLAEARGHLEELGERTILFLDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   +++L P +ED  + L+    + P        LSR       +++       +
Sbjct: 118 IHRFNRAQQDVLLPDVEDGVIILIGATTQNPFFAINTPLLSR-------SQIFRFEPLSR 170

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
           D     +     + E       RG     + +TD+A   +     G  R A   L     
Sbjct: 171 DDVRTLLLRAVSDTE-------RGLGKLNVTITDDALAFLVEVCDGDARRALTAL----- 218

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
             E+    ++  E A AA       ++  D +  +    +      G    +T SA +  
Sbjct: 219 --EIGVKSSLAPENAKAASSIRFDLELAQDSIQQK----VIEFDPTGDTHYDTASAFIKS 272

Query: 292 PRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
            R +  D    +M +       PR   R L+  A + +G   P
Sbjct: 273 LRGSDPDAALYWMARMLEGGEDPRFVARRLVIFASEDVGNADP 315


>gi|146307409|ref|YP_001187874.1| recombination factor protein RarA [Pseudomonas mendocina ymp]
 gi|145575610|gb|ABP85142.1| Recombination protein MgsA [Pseudomonas mendocina ymp]
          Length = 440

 Score =  159 bits (401), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 71/328 (21%), Positives = 119/328 (36%), Gaps = 48/328 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + LR  +L+E+ GQ    +  K   EA +    AL  ++F GPPG+GKTTLA+++A+
Sbjct: 12  PLAARLRATSLDEYVGQEHVLAPGKPLREALEQ--GALHSMIFWGPPGVGKTTLARLLAK 69

Query: 77  ELGVNFRSTSGPVIAKAGDLAALL-------TNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
               +F + S  V++   ++   +            R +LF+DE+HR +   ++   P +
Sbjct: 70  VTDAHFETISA-VLSGVKEIRQAVEVAQQHAAQYGRRTILFVDEVHRFNKSQQDAFLPYV 128

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ED  L  +    E PS       LSR  +    +        L +R              
Sbjct: 129 EDGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAAMRKLVNRALTD---------- 178

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
                 +G     L++ DEA   +   + G  R     L    D AE             
Sbjct: 179 -----PKGLGERHLSLPDEAFQILLAAADGDGRRLLNFLENAADLAEDGG---------- 223

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
                    ++G + L         R   GG    + ISA     R +  D    +  + 
Sbjct: 224 ---------EIGVELLQNLLGDSRRRFDKGGEAFYDQISALHKSVRGSNPDGALYWYARM 274

Query: 308 GFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                 P    R ++ +A + +G   P 
Sbjct: 275 LDGGCDPLYIARRVVRMASEDIGNADPR 302


>gi|262171856|ref|ZP_06039534.1| ATPase AAA family [Vibrio mimicus MB-451]
 gi|261892932|gb|EEY38918.1| ATPase AAA family [Vibrio mimicus MB-451]
          Length = 449

 Score =  159 bits (401), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 67/342 (19%), Positives = 115/342 (33%), Gaps = 42/342 (12%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M    L            + +RP+T+E++ GQ       K    A +A    +  ++  G
Sbjct: 1   MSNYSLDFSGDEDFRPLAARMRPQTVEQYIGQQHILGPGKPLRRALEAGH--IHSMILWG 58

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIH 115
           PPG GKTTLA+V A          S  V +   ++ A +           R +LF+DE+H
Sbjct: 59  PPGTGKTTLAEVAANYANAEVERVSA-VTSGVKEIRAAIEKARENKLSGRRTILFVDEVH 117

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P +ED  +  +    E PS       LSR  +   T+            
Sbjct: 118 RFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNALLSRARVYKLTS------------ 165

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
             +  +     ++      +RG         D     +A    G  R++   L  + D A
Sbjct: 166 --LTQQEIQQALQQAIADTERGLGKVAAVFADNVLDRLAELVNGDARMSLNYLELLYDMA 223

Query: 234 EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
                     ++   A +                   ++R    G +  + ISA     R
Sbjct: 224 REDDQGCKLIDLPLLAEVAGEK---------------VSRFDNKGDIWYDLISAVHKSIR 268

Query: 294 DAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +  D    +  +       P    R L+ IA + +G   P 
Sbjct: 269 GSDPDAALYWAARMISAGCDPLYIARRLLAIASEDVGNADPR 310


>gi|327480897|gb|AEA84207.1| recombination factor protein RarA [Pseudomonas stutzeri DSM 4166]
          Length = 441

 Score =  159 bits (401), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 75/338 (22%), Positives = 122/338 (36%), Gaps = 49/338 (14%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L SR    +    + LR  +L+E+ GQ    +  K   EA +    AL  ++F GPPG+G
Sbjct: 3   LFSREPVAQ-PLAARLRAASLDEYVGQEHLLARGKPLREALEQ--GALHSMVFWGPPGVG 59

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALL-------TNLEDRDVLFIDEIHRLSI 119
           KTTLA+++A+    +F + S  V+A   ++   +            R +LF+DE+HR + 
Sbjct: 60  KTTLARLLAKVSDAHFETVSA-VLAGVKEIRQAVEIAKQQAAQYGRRTILFVDEVHRFNK 118

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             ++   P +ED  L  +    E PS       LSR  +    +        L  R    
Sbjct: 119 SQQDAFLPYVEDGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVTRALTE 178

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                           RG     L + +E+   +   + G  R    LL    D AE   
Sbjct: 179 ---------------HRGLGELHLTLPEESFQMLLAAADGDGRRLLNLLENASDLAEQGG 223

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
             +               D +G  +          R   GG    + ISA     R +  
Sbjct: 224 VISTDL----------LQDLLGDSR---------RRFDKGGEAFYDQISALHKSVRGSNP 264

Query: 298 DLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           D    +  +       P    R ++ +A + +G   P 
Sbjct: 265 DAALYWFARMLDGGCDPLYIARRVVRMASEEIGNADPR 302


>gi|116050600|ref|YP_790581.1| recombination factor protein RarA [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115585821|gb|ABJ11836.1| putative ATPase associated with chromosome architecture
           [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 441

 Score =  159 bits (401), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 79/343 (23%), Positives = 129/343 (37%), Gaps = 52/343 (15%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD     S  V+Q     + LRP  L+E+ GQ    +  K   EA +    AL  ++F G
Sbjct: 1   MDLFR--SEPVAQ--PLAARLRPANLDEYVGQEHLLARGKPLREALEQ--GALHSMIFWG 54

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALL-------TNLEDRDVLFIDEI 114
           PPG+GKTTLA+++A+    +F + S  V++   ++   +            R +LF+DE+
Sbjct: 55  PPGVGKTTLARLLAQVSDAHFETISA-VLSGVKEIRQAVEVAKQHAAQYGRRTILFVDEV 113

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++   P +ED  L  +    E PS       LSR  +    +        L+ 
Sbjct: 114 HRFNKSQQDAFLPYVEDGTLIFIGATTENPSFELNNALLSRARVYVLKSLDE---AALRK 170

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
             G  +  +            +G     L++ +E+   +   + G  R    LL    D 
Sbjct: 171 LVGRALNED------------KGLGKRKLSLPEESFQVLLAAADGDGRRLLNLLENAADL 218

Query: 233 AEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEP 292
           AE         EI+   L  L  D                R   GG    + ISA     
Sbjct: 219 AE------DGSEISPELLQNLLGD-------------TRRRFDKGGEAFYDQISALHKSV 259

Query: 293 RDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           R +  D    +  +       P    R ++ +A + +G   P 
Sbjct: 260 RGSNPDAALYWFARMLDGGCDPLYIARRVVRMASEEVGNADPR 302


>gi|119476161|ref|ZP_01616513.1| hypothetical protein GP2143_06210 [marine gamma proteobacterium
           HTCC2143]
 gi|119450788|gb|EAW32022.1| hypothetical protein GP2143_06210 [marine gamma proteobacterium
           HTCC2143]
          Length = 441

 Score =  159 bits (401), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 76/347 (21%), Positives = 130/347 (37%), Gaps = 57/347 (16%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MM+   L S +        + +RPR L ++ GQ       +   EA  +    L  ++  
Sbjct: 1   MMN-HNLFSESRV-YQPLAAKMRPRILVDYIGQHHLLGEGRPLREAILSGQ--LHSMILW 56

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEI 114
           GPPG+GKT+LA+++A     +F + S  V+A   D+ A +           + +LFIDE+
Sbjct: 57  GPPGVGKTSLARLIADLCDAHFITLSA-VLAGVKDIRASVEEARQYQANGRQTILFIDEV 115

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++   P +ED  +  +    E PS       LSR  +    +           
Sbjct: 116 HRFNKSQQDAFLPFVEDGTVIFIGATTENPSFELNNALLSRTRVYKLRS----------- 164

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACE---IAMRSRGTPRIAGRLLRRV 229
                      E+ED++ I+ R  +         A  E   +A+ + G  R A  L+   
Sbjct: 165 ----------LELEDIEKIIDRACQSDPAVKVQIAGDELHQLAVAADGDARRALNLMELA 214

Query: 230 RDF-AEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAG 288
            +  +E+   K +   I    L        GF          + R   GG +  E ISA 
Sbjct: 215 LELSSEIDGVKIVDEAIISEVLD-------GF----------VRRFDKGGDLFYEQISAL 257

Query: 289 LSEPRDAIEDLIEPYMIQQG--FIQRTPRGRLLMPIAWQHLGIDIPH 333
               R +  D    +  +            R ++ +A + +G   P 
Sbjct: 258 HKAVRGSSPDAALYWFCRMLESGCDALYIARRVVRMASEDVGNADPR 304


>gi|119774909|ref|YP_927649.1| recombination factor protein RarA [Shewanella amazonensis SB2B]
 gi|119767409|gb|ABL99979.1| Recombination protein MgsA [Shewanella amazonensis SB2B]
          Length = 442

 Score =  159 bits (401), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 78/329 (23%), Positives = 116/329 (35%), Gaps = 47/329 (14%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +   + +RP ++EE+ GQ       K   +A  A    +  +L  GPPG GKTTLA++VA
Sbjct: 12  NPLAARMRPASVEEYIGQSHLLGEGKPLRQALLA--GKVHSMLLWGPPGTGKTTLAELVA 69

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPA 128
           R    +    S  V +   ++ A +   +        R +LF+DE+HR +   ++   P 
Sbjct: 70  RYANAHVERISA-VTSGVKEIRAAIEQAKNVAQSRGQRTLLFVDEVHRFNKSQQDAFLPF 128

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           +ED  +  +    E PS       LSR  +         L   L+D     I       E
Sbjct: 129 IEDGTVIFIGATTENPSFEVNNALLSRCRV--------YLIKRLEDDAIGQILAQANSDE 180

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
                  RG    GL +  E    IA    G  R A  LL  + D         +     
Sbjct: 181 A------RGLGKRGLLLKAELKSAIARLCDGDARKALNLLELMSDLLPDGGEYNLELLSE 234

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
            A       DK G    DL                   ISA     R +  D    +  +
Sbjct: 235 VAGHQAAGYDKNGDQYYDL-------------------ISAVHKSIRGSAPDAALYWFCR 275

Query: 307 QGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                  P    R L+ IA + +G   P+
Sbjct: 276 ILEGGGDPLYVARRLLAIASEDIGNADPN 304


>gi|312793248|ref|YP_004026171.1| AAA ATPase central domain-containing protein [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312180388|gb|ADQ40558.1| AAA ATPase central domain protein [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 441

 Score =  159 bits (401), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 79/341 (23%), Positives = 131/341 (38%), Gaps = 51/341 (14%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L  + + +E      LRP+ LEE  GQ    S  K      K   + L  ++  GPPG G
Sbjct: 7   LGEKRLKKESPLAYKLRPKRLEEIVGQEHILSPGKPLYNLIK--NDRLTSIILYGPPGTG 64

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSI 119
           KTT+A V+A   G  F++ +   IA   D+  ++   +        + +LFIDEIHR + 
Sbjct: 65  KTTIAHVIANATGKTFKTINA-TIAGVNDIKKIIEEAKIEFSQTGRKTILFIDEIHRFNK 123

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           + ++ L P++E+  + L+    E P     K  +SR  +            PL++   + 
Sbjct: 124 LQQDALLPSVEEGIIILIGATTENPFYEVNKALVSRSLVFELF--------PLKEEDILK 175

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
           I      IE   +  + G     + + ++A   IA  S G  R+A  +L  V   ++   
Sbjct: 176 I------IERAISDKENGLGELNIQIEEDAKKLIAKLSGGDARVALNILEAVVYSSQARD 229

Query: 238 AKTITREIADAALLRLA----IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
              I         L        D  G    D                   TISA +   R
Sbjct: 230 DGKIYISQESVINLSNRKTAIYDATGDMHYD-------------------TISAFIKSVR 270

Query: 294 DAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
            +  D    Y+ +        +   R L+ +A + +G+  P
Sbjct: 271 GSDPDAALFYLAKMLDSGEDIKFIARRLIILAAEDIGLADP 311


>gi|308126386|ref|ZP_07663741.1| holliday junction ATP-dependent DNA helicase RuvB [Vibrio
           parahaemolyticus AQ4037]
 gi|308109584|gb|EFO47124.1| holliday junction ATP-dependent DNA helicase RuvB [Vibrio
           parahaemolyticus AQ4037]
          Length = 129

 Score =  159 bits (401), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 67/128 (52%), Positives = 90/128 (70%)

Query: 203 VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQ 262
           +  E A E+A R+RGTPRIA RLLRRVRD+AEV     I  ++AD AL  L +D  GFD 
Sbjct: 1   MEPEGALEVARRARGTPRIANRLLRRVRDYAEVKGNGHICADVADKALNMLDVDAQGFDY 60

Query: 263 LDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPI 322
           +D + L  I   FGGGPVG++ ++A + E +D IED++EPY+IQQG++QRTPRGR+    
Sbjct: 61  MDRKLLLAIMEKFGGGPVGLDNMAAAIGEEKDTIEDVLEPYLIQQGYLQRTPRGRIATDR 120

Query: 323 AWQHLGID 330
           A+ H GI+
Sbjct: 121 AYLHFGIE 128


>gi|161378167|ref|NP_298742.2| recombination factor protein RarA [Xylella fastidiosa 9a5c]
          Length = 455

 Score =  159 bits (401), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 71/327 (21%), Positives = 123/327 (37%), Gaps = 45/327 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RPRTL E  GQ    +  +    A    +  +  ++  GPPG GKTTL+ ++A+
Sbjct: 22  PLAERMRPRTLHEMVGQKRLLAPDRALHRAV--ASGHVHSMILWGPPGCGKTTLSLLLAQ 79

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAME 130
            +   F + S  V++   ++  +L           R VLF+DE+HR + + ++   P +E
Sbjct: 80  YIDAEFHAVSA-VLSGLPEVRQILAEAAQRFSEGRRTVLFVDEVHRFNNMQQDAFLPHIE 138

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
              +  +    E PS       LSR        RV +L         + ++    + E  
Sbjct: 139 RGSIIFVGATTENPSFELNSALLSRC-------RVHVLEAVSSQDIVVALQRALQDTE-- 189

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
                RG     + V++ +  EIA  + G  R A  LL    + A+      +T ++   
Sbjct: 190 -----RGLGEQKIEVSEASLLEIAKAADGDVRRALTLLEIAAELAQ-DEDGQMTADLLSQ 243

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L             D        R    G    + ISA     R +  D    ++++  
Sbjct: 244 VLA------------DRS-----RRFDKRGEQFYDQISALHKSVRSSNPDAALYWLLRML 286

Query: 309 FIQRTP--RGRLLMPIAWQHLGIDIPH 333
                P    R L  +A + +G+  P 
Sbjct: 287 DGGCDPIYLARRLTRMAIEDIGLADPR 313


>gi|169824318|ref|YP_001691929.1| ATPase [Finegoldia magna ATCC 29328]
 gi|167831123|dbj|BAG08039.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [Finegoldia magna ATCC 29328]
          Length = 431

 Score =  159 bits (401), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 73/345 (21%), Positives = 129/345 (37%), Gaps = 49/345 (14%)

Query: 2   MDREGL-LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD     L           + LRP++L+++ GQ       K+     KA  + +  ++F 
Sbjct: 1   MDLFEYNLQLQKENSSPLANRLRPKSLDKYFGQSHVVGEGKLLNRLIKA--DKIPSMIFY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDE 113
           GPPG GKTTLA++++ +    F   S  +     D+  +++  +        + VLFIDE
Sbjct: 59  GPPGTGKTTLAEIISNQTNSLFERLSA-ISNGVKDIREVISTAKTNLSMYNKKTVLFIDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++ L   +ED  + L+    E P     K  LSR  +I           PL 
Sbjct: 118 IHRFNKSQQDALLGYVEDGTITLIGATTENPFFEVNKALLSRCQIIEL--------KPLT 169

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR-RVR 230
           D     I  N    +          K   + + ++A   +   + G  R A   L   V 
Sbjct: 170 DNDIRNIIENALTEDKK-------LKEMNIQIDEKAIDVLVNSANGDARSALNALEIAVE 222

Query: 231 DFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
              +V     I  +    ++ +     + +D+ +  Y                 ISA + 
Sbjct: 223 STDQVNGCLIIDEDAIKNSVFKP---VLKYDKEEDHY---------------NVISAFIK 264

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
             R +  D    Y+ +       P+   R ++  A + +G+  P 
Sbjct: 265 SMRGSDIDAALYYLARMIESGEDPKFIARRMVIFASEDIGLANPE 309


>gi|325982389|ref|YP_004294791.1| MgsA AAA+ ATPase domain-containing protein [Nitrosomonas sp. AL212]
 gi|325531908|gb|ADZ26629.1| MgsA AAA+ ATPase domain-containing protein [Nitrosomonas sp. AL212]
          Length = 444

 Score =  159 bits (401), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 72/340 (21%), Positives = 121/340 (35%), Gaps = 53/340 (15%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           GL S +  Q      LLRP+ L +  GQ       K    A +  +     ++  GPPG 
Sbjct: 10  GLFSASTPQA-PLAELLRPKQLSDVIGQNHLLGAGKPLRLAFE--SGKPHSMILWGPPGT 66

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLS 118
           GKT+LA++++ E    F S S  V++   D+   +              +LF+DE+HR +
Sbjct: 67  GKTSLARLMSTEFDCEFISLSA-VLSGIKDIRNAIEEARSTLQQTGRHTILFVDEVHRFN 125

Query: 119 IIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
              ++   P +E   +  +    E PS       LSR  +   T       + L +    
Sbjct: 126 KSQQDAFLPHIEQGLITFIGATTENPSFEINNALLSRVQVYILTVLSEHELSCLLEHAQN 185

Query: 177 PIRLNF-YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
            +  N  +  E  K +++                            A RLL  +      
Sbjct: 186 QMPDNLQFSDESRKLLIEFADG-----------------------DARRLLNLLEQIHTA 222

Query: 236 AHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDA 295
           A  ++IT+   D  L  L+ +   FD               GG    + ISA     R +
Sbjct: 223 AKTESITQISKDIVLNTLSRNMRSFD--------------KGGDEFYDQISALHKSVRGS 268

Query: 296 IEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
             D    ++ +           GR L+ +A + +G+  P 
Sbjct: 269 SPDAALYWLCRMLDGGADALYIGRRLIRMAVEDIGLADPR 308


>gi|290890726|ref|ZP_06553796.1| hypothetical protein AWRIB429_1186 [Oenococcus oeni AWRIB429]
 gi|290479701|gb|EFD88355.1| hypothetical protein AWRIB429_1186 [Oenococcus oeni AWRIB429]
          Length = 445

 Score =  159 bits (401), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 76/349 (21%), Positives = 128/349 (36%), Gaps = 60/349 (17%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M+++  L   N        S +RP+TLE+F GQ       KV  E  +   + +  ++F 
Sbjct: 1   MIEQASLFENNSENGRPLASRVRPQTLEQFVGQENLLGPGKVLRELIEK--DQISSMIFW 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEI 114
           GPPG+GKTTLA+++A      F + S    +   ++  ++ + E+      R ++FIDEI
Sbjct: 59  GPPGVGKTTLAEIIAHRSKAKFITFSAAT-SGIKEIRKIMKDAENNRQFGVRTIVFIDEI 117

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSR-----FTLIAATTRVGLLT 167
           HR +   ++   P +E   + L+    E PS       LSR        + ++  V LL 
Sbjct: 118 HRFNKAQQDSFLPYVEKGSIILIGATTENPSFEINSALLSRSKVFVLRQLKSSDIVKLLE 177

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
           N L++  G   +        L+ I                    A  + G  R A   L 
Sbjct: 178 NALKNPHGFAKQKISISSRTLQLI--------------------ADFANGDARTALNTLE 217

Query: 228 RVRDFAEVAHAKTITREIADAAL---LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIET 284
                       T  +      L     L  DK G +  ++                   
Sbjct: 218 MAVLNGHHTKNGTEIKTEDLKQLITKKSLLYDKHGEEHYNI------------------- 258

Query: 285 ISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
           ISA     R++  D    ++ +       P    R L+  A + +G+  
Sbjct: 259 ISALHKSMRNSDVDAAIYWLARMLESGEDPLYVARRLIRFASEDIGLAD 307


>gi|303241541|ref|ZP_07328042.1| AAA ATPase central domain protein [Acetivibrio cellulolyticus CD2]
 gi|302590959|gb|EFL60706.1| AAA ATPase central domain protein [Acetivibrio cellulolyticus CD2]
          Length = 430

 Score =  158 bits (400), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 76/339 (22%), Positives = 129/339 (38%), Gaps = 61/339 (17%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           +++     +RP+TLEEF GQ +   + K+     KA  + +  V+  GPPG GKT+LA++
Sbjct: 4   KKEPLAYRMRPKTLEEFFGQEDIVGSGKLLYRMIKA--DRITSVILYGPPGTGKTSLARI 61

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLT-------NLEDRDVLFIDEIHRLSIIVEEILY 126
           +A     NF   +  V A   D+  ++        N   + VLF+DEIHR +   ++ L 
Sbjct: 62  IANTTKANFEKLNA-VTAGVSDIKRIVADTRNQILNPSQKTVLFVDEIHRFNKAQQDALL 120

Query: 127 PAMEDFQLDLM--VGEGPSARSVKINLSR-----FTLIAATTRVGLLTNPLQDRFGIPIR 179
           P +ED  + L+    E P     K  +SR        +     + ++ N L D+      
Sbjct: 121 PYVEDGTIILVGATTENPYFEVNKALISRSSVFMLKPLGMGAIISIVKNALHDK------ 174

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
                        +RG     + + DE    +A    G  RIA   +      + +    
Sbjct: 175 -------------ERGLGSYDINIDDETLNFVAEFCNGDARIALNAIELAVLTSTMDRDG 221

Query: 240 T--ITREIADAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDA 295
              I  +  +  + +     DK G    D                    ISA +   R +
Sbjct: 222 KIFIDIKTVEECMQKRVLKFDKTGEGHYD-------------------NISAFIKSMRGS 262

Query: 296 IEDLIEPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIP 332
             D +  Y+ +  +    P    R +M  A + +G   P
Sbjct: 263 DPDAVVLYLARALYAGEDPMFLARRIMICASEDVGTANP 301


>gi|218282978|ref|ZP_03489080.1| hypothetical protein EUBIFOR_01666 [Eubacterium biforme DSM 3989]
 gi|218216172|gb|EEC89710.1| hypothetical protein EUBIFOR_01666 [Eubacterium biforme DSM 3989]
          Length = 453

 Score =  158 bits (400), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 69/345 (20%), Positives = 130/345 (37%), Gaps = 55/345 (15%)

Query: 2   MDREGLLSRNVSQED--ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M+++ L S    QED       +RP TL+E+ GQ +  +   +  +  +   + +  ++F
Sbjct: 1   MEQDSLFS---IQEDTRPLADRMRPETLDEYVGQKQLVAKGNLLWQMIE--HDQVTSMIF 55

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFIDE 113
            GPPG+GKTTLA+++A +   ++      V +   ++  ++        L  + +LF+DE
Sbjct: 56  WGPPGVGKTTLARIIAHQTK-SYFVDFSAVTSGIKEIKEVMKQADTRRALGQKTILFVDE 114

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++   P +E   + L+    E PS       LSR  +    +        L 
Sbjct: 115 IHRFNKAQQDAFLPYVEKGSIILIGATTENPSFEINSALLSRCRVFVLNSLNTDDLKDLI 174

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R                    +G     + +TDE    IA  S G  R     L  V  
Sbjct: 175 IRAISSS---------------KGLGNLKIHITDEDIEAIAAFSGGDARFCLNTLEMVVY 219

Query: 232 FAEVAHAKT-ITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAG 288
            +        ++++I    L + +   DK G +  ++                   ISA 
Sbjct: 220 NSPSELDGIHVSQDILKQCLQKRSLLYDKKGEEHYNI-------------------ISAL 260

Query: 289 LSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
               R++       ++ +       P    R  + +A + +G+  
Sbjct: 261 HKSVRNSDVQAAVYWLARMLEAGEDPLYIARRFVRMASEDIGMAD 305


>gi|258626330|ref|ZP_05721177.1| conserved hypothetical protein [Vibrio mimicus VM603]
 gi|258581382|gb|EEW06284.1| conserved hypothetical protein [Vibrio mimicus VM603]
          Length = 449

 Score =  158 bits (400), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 67/342 (19%), Positives = 115/342 (33%), Gaps = 42/342 (12%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M    L            + +RP+T+E++ GQ       K    A +A    +  ++  G
Sbjct: 1   MSNYSLDFSGDEDFRPLAARMRPQTVEQYIGQQHILGPGKPLRRALEAGH--IHSMILWG 58

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIH 115
           PPG GKTTLA+V A          S  V +   ++ A +           R +LF+DE+H
Sbjct: 59  PPGTGKTTLAEVAANYANAEVERVSA-VTSGVKEIRAAIEKARENKLSGRRTILFVDEVH 117

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P +ED  +  +    E PS       LSR  +   T+            
Sbjct: 118 RFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNALLSRARVYKLTS------------ 165

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
             +  +     ++      +RG         D     +A    G  R++   L  + D A
Sbjct: 166 --LTQQEIQQALQQAIADTERGLGKVAAVFADNVLDRLAELVNGDARMSLNYLELLYDMA 223

Query: 234 EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
                     ++   A +                   ++R    G +  + ISA     R
Sbjct: 224 REDDQGRKLIDLPLLAEVAGEK---------------VSRFDNKGDIWYDLISAVHKSIR 268

Query: 294 DAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +  D    +  +       P    R L+ IA + +G   P 
Sbjct: 269 GSDPDAALYWAARMISAGCDPLYIARRLLAIASEDVGNADPR 310


>gi|163868623|ref|YP_001609832.1| recombination factor protein RarA [Bartonella tribocorum CIP
           105476]
 gi|161018279|emb|CAK01837.1| ATPase, AAA family [Bartonella tribocorum CIP 105476]
          Length = 455

 Score =  158 bits (400), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 73/337 (21%), Positives = 121/337 (35%), Gaps = 53/337 (15%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
               V++       +RP +L E  GQ        +      A   ++  ++F GPPG GK
Sbjct: 26  FDPKVNKNQPLAERMRPCSLNEVVGQKHLIGEDGLLSRMVAA--GSIGSLIFWGPPGTGK 83

Query: 68  TTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           TT+A+++A E    F   S        + K  ++A       D+ +LF+DEIHR +   +
Sbjct: 84  TTVARLLALETNFAFEQVSAIFTGVSELKKIFEVAQRRFMSGDKTLLFVDEIHRFNRAQQ 143

Query: 123 EILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +   P ME+  + L+    E PS       LSR  ++   +                   
Sbjct: 144 DSFLPVMENGTVVLIGATTENPSFELNAALLSRARVLTFFS------------------- 184

Query: 181 NFYEIEDLKTIVQRGAKLTG--LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
             ++ E L  +++R  ++ G  L + D A   +   S G  R+A  L   V   A     
Sbjct: 185 --HDHESLGMLLKRAEEVEGKLLPLDDGARDVLIGMSDGDARVALTLAEEVWSVA----- 237

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
                E    A     + +      D            G       ISA     R +  D
Sbjct: 238 ---RSEEILDAGALQKVIQRRAPIYD-----------KGRDGHYNLISALHKSVRGSDPD 283

Query: 299 LIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
               Y+ +       P   GR L+ +A + +G+  P 
Sbjct: 284 AALYYLARMLDAGEDPLYIGRRLVRMAVEDVGLADPQ 320


>gi|222529053|ref|YP_002572935.1| recombination factor protein RarA [Caldicellulosiruptor bescii DSM
           6725]
 gi|222455900|gb|ACM60162.1| AAA ATPase central domain protein [Caldicellulosiruptor bescii DSM
           6725]
          Length = 441

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 81/347 (23%), Positives = 134/347 (38%), Gaps = 52/347 (14%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD    L     ++++ ++  LRP+ LEE  GQ    S  K      K   + L  ++  
Sbjct: 1   MDFFQYLGEKRLKKESPLAYKLRPKRLEEIVGQEHILSPGKPLYNLIK--NDRLTSIILY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDE 113
           GPPG GKTT+A V+A   G  F++ +   IA   D+  ++   +        + +LFIDE
Sbjct: 59  GPPGTGKTTIAHVIANATGKTFKTINA-TIAGVNDIKKIIEEAKFEFTQTGKKTILFIDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR + + ++ L P++E+  + L+    E P     K  +SR  +            PL+
Sbjct: 118 IHRFNKLQQDALLPSVEEGVIILIGATTENPFYEVNKALVSRSLVFELF--------PLK 169

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
           +   + I      IE   +  + G     + + D+A   IA  S G  R+A  +L  V  
Sbjct: 170 EEDILKI------IERAISDKENGLGELNIQIEDDAKKLIAKLSGGDARVALNILEAVVY 223

Query: 232 FAEVAHAKTITREIADAALLRLA----IDKMGFDQLDLRYLTMIARNFGGGPVGIETISA 287
            +       I         L        D  G    D                   TISA
Sbjct: 224 SSTAQDDGKICISQESVINLSNRKTALYDATGDMHYD-------------------TISA 264

Query: 288 GLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
            +   R +  D    Y+ +        +   R L+ +A + +G+  P
Sbjct: 265 FIKSVRGSEPDAALFYLAKMLDSGEDIKFIARRLIILAAEDIGLADP 311


>gi|297845668|ref|XP_002890715.1| AAA-type ATPase family protein [Arabidopsis lyrata subsp. lyrata]
 gi|297336557|gb|EFH66974.1| AAA-type ATPase family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 525

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 74/345 (21%), Positives = 124/345 (35%), Gaps = 50/345 (14%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           R  L S    Q       +RPRTL++  GQ    S   +   A K  +  L  ++F GPP
Sbjct: 89  RPKLSSSRHRQHQPLSERMRPRTLDDVVGQEHLLSPASLLRSAIK--SNRLPSIVFWGPP 146

Query: 64  GLGKTTLAQVV---ARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDE 113
           G GKT++A+ +   +++  +    +   V +   D+   + + +        R VLF+DE
Sbjct: 147 GTGKTSIAKSLINSSKDPSLYRFVSLSAVTSGVKDVRDAVESAKRLNLEGKKRTVLFMDE 206

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           +HR +   ++   P +ED  +  +    E PS   +   LSR  ++            L 
Sbjct: 207 VHRFNKSQQDSFLPVIEDGSILFIGATTENPSFHLITPLLSRCRVLTLNPLKPNHVETLL 266

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R                   +RG     + V D     +A    G  R+A   L     
Sbjct: 267 RR--------------AVDDSERGLS-NSVEVDDSVIEFLAYNCDGDARVALNALEISAT 311

Query: 232 FAEVAH--AKTITREIADAALL--RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISA 287
            A         ++ + A  AL    LA DK G    +   ++ + ++  GG         
Sbjct: 312 MATARAGSDAVVSIDDAKEALQCKHLAYDKAGDQHYN--LISALHKSMRGGDANAAIYWL 369

Query: 288 GLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
                   +E   EP  I           R L+  A + +G+  P
Sbjct: 370 A-----RMLEGGEEPLYI----------ARRLIRFASEDIGLADP 399


>gi|330503298|ref|YP_004380167.1| recombination factor protein RarA [Pseudomonas mendocina NK-01]
 gi|328917584|gb|AEB58415.1| recombination factor protein RarA [Pseudomonas mendocina NK-01]
          Length = 441

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 70/328 (21%), Positives = 119/328 (36%), Gaps = 48/328 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + LR  +L+E+ GQ    +  K   EA +    AL  ++F GPPG+GKTTLA+++A+
Sbjct: 12  PLAARLRATSLDEYVGQEHVLAPGKPLREALEQ--GALHSMIFWGPPGVGKTTLARLLAK 69

Query: 77  ELGVNFRSTSGPVIAKAGDLAALL-------TNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
               +F + S  V++   ++   +            R +LF+DE+HR +   ++   P +
Sbjct: 70  VTDAHFETISA-VLSGVKEIRQAVEVAQQHAAQYGRRTILFVDEVHRFNKSQQDAFLPYV 128

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ED  L  +    E PS       LSR  +    +        L +R              
Sbjct: 129 EDGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAAMRKLVNR-------------- 174

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
                 +G     L++ D+A   +   + G  R     L    D AE             
Sbjct: 175 -ALSDPKGLGERHLSLPDDAFQILLAAADGDGRRLLNFLENAADLAEDDG---------- 223

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
                    ++G + L         R   GG    + ISA     R +  D    +  + 
Sbjct: 224 ---------EIGVELLQNLLGDSRRRFDKGGEAFYDQISALHKSVRGSSPDGALYWYARM 274

Query: 308 GFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                 P    R ++ +A + +G   P 
Sbjct: 275 LDGGCDPLYIARRVVRMASEDIGNADPR 302


>gi|229828714|ref|ZP_04454783.1| hypothetical protein GCWU000342_00780 [Shuttleworthia satelles DSM
           14600]
 gi|229793308|gb|EEP29422.1| hypothetical protein GCWU000342_00780 [Shuttleworthia satelles DSM
           14600]
          Length = 447

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 76/343 (22%), Positives = 119/343 (34%), Gaps = 44/343 (12%)

Query: 2   MDREGLL-SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD      ++N   E    S LRP  LEE  GQ       K+   A KA  + L  V+F 
Sbjct: 1   MDLFDYARNKNQEHESPLASRLRPTCLEEVVGQEHIIGEDKLLYRAIKA--DKLSSVIFY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDE 113
           GPPG GKTTLA+V+A     +FR  +    A   D+   +   +D       + +LFIDE
Sbjct: 59  GPPGTGKTTLARVIANTTSADFRQINA-TTAGKKDMQEAVEAAKDTLGMYGKKTILFIDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++ L P +ED  + L+    E P        LSR                  
Sbjct: 118 IHRFNKGQQDYLLPYVEDGTVILIGATTENPYFEVNGALLSR------------------ 159

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
               +   L     E+++ ++ R        +    A            +A    R    
Sbjct: 160 ---SVIFELKPLSQENIRKLLLRAISDREKGMGSYGAVIAEDALDFLADMANGDARNALT 216

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
             E+    T   E             +  +         + +    G    +TISA +  
Sbjct: 217 AIELGILTTPRSEDGK--------IHISLEVASECIQRRVVKYDKKGDGHYDTISAFIKS 268

Query: 292 PRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
            R +  D    Y+ +  +     +   R +   A + +G   P
Sbjct: 269 MRGSDPDAAIYYLARMLYAGEDVKFIARRICICASEDVGNADP 311


>gi|217973365|ref|YP_002358116.1| recombination factor protein RarA [Shewanella baltica OS223]
 gi|217498500|gb|ACK46693.1| AAA ATPase central domain protein [Shewanella baltica OS223]
          Length = 443

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 76/337 (22%), Positives = 118/337 (35%), Gaps = 48/337 (14%)

Query: 8   LSRNVSQE-DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           LS N + +     + +RPRT+ E+ GQ       +   +A +A       ++  GPPG G
Sbjct: 4   LSFNFAPDFRPLAARMRPRTIAEYIGQAHLLGEGQPLRKALEAGRA--HSMMLWGPPGTG 61

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSI 119
           KTTLA+++A     +    S  V +   D+ A +   +        R +LF+DE+HR + 
Sbjct: 62  KTTLAELIAHYSNAHVERISA-VTSGVKDIRAAIEQAKAVAESRGQRTLLFVDEVHRFNK 120

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             ++   P +ED  +  +    E PS       LSR        RV L+     D     
Sbjct: 121 SQQDAFLPFIEDGTVIFIGATTENPSFEINNALLSR-------ARVYLIKRLSHDEIAHI 173

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
           +     + E       RG       +  +    +A    G  R A  L+  + D      
Sbjct: 174 VTQALSDTE-------RGLGQRQFVMPTDVLTTLAQLCDGDARKALNLIELMSDMLADGG 226

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
             T    I  A       DK G    DL                   ISA     R +  
Sbjct: 227 TFTTDMLIQVAGHQVAGFDKNGDQFYDL-------------------ISAVHKSIRGSAP 267

Query: 298 DLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           D    +  +       P    R L+ IA + +G   P
Sbjct: 268 DAALYWFCRILEGGGDPLYVARRLLAIASEDVGNADP 304


>gi|315185392|gb|EFU19164.1| Recombination protein MgsA [Spirochaeta thermophila DSM 6578]
          Length = 741

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 75/353 (21%), Positives = 135/353 (38%), Gaps = 56/353 (15%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M   + L     S  ++   + +RPRTL+EF GQ       ++   A +A  + L  V+F
Sbjct: 1   MNRADNLFEAAKSLHDEPLAARMRPRTLDEFVGQEHILGPGRLLRRAIQA--DRLSSVIF 58

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFID 112
            GPPG GKTTLA+V+A      F S +  V++   ++ A +            R +LF+D
Sbjct: 59  YGPPGCGKTTLARVIANHTKSAFLSLNA-VLSGVQEVRAAIEKARQEMAYHGRRTILFVD 117

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           E+HR +   ++ L P +E+  + L+    + P        +SR  +             +
Sbjct: 118 EVHRWNKAQQDALLPWVENGTVILIGATTQNPYFEVNSALISRSRIFQLKPLTRQHLRTI 177

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
            +R                +  +RG     + + ++A   +   + G  R     +    
Sbjct: 178 AER--------------ALSDPERGYGKYRIILDEDALEHLITVADGDARTLLSAIELAV 223

Query: 231 DFA------EVAHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGI 282
           +               ITRE+A+ ++ R A   DK G    D+                 
Sbjct: 224 ETTPDTFPPPEGEVIHITREVAEDSIQRKAVLYDKEGDFHYDI----------------- 266

Query: 283 ETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRG--RLLMPIAWQHLGIDIPH 333
             ISA +   R +  D    ++ +       P    R ++ +A + +G+  PH
Sbjct: 267 --ISAFIKSLRGSDPDAAFYWLARMVDAGEDPHYIFRRMLILACEDVGMADPH 317


>gi|304397061|ref|ZP_07378940.1| AAA ATPase central domain protein [Pantoea sp. aB]
 gi|304355210|gb|EFM19578.1| AAA ATPase central domain protein [Pantoea sp. aB]
          Length = 447

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 77/337 (22%), Positives = 126/337 (37%), Gaps = 42/337 (12%)

Query: 8   LSRNVSQED--ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           LS + S E+     + +RP TL+++ GQ       K    A +A    L  ++  GPPG 
Sbjct: 4   LSLDFSTENFKPLAARMRPETLKQYIGQQHLLGAGKPLPRAIEAGH--LHSMILWGPPGT 61

Query: 66  GKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GKTTLA+++A     +    S        I +A + A    +   R +LF+DE+HR +  
Sbjct: 62  GKTTLAEIIAHYGNADVERISAVTSGVKEIREAIERARQNKHAGRRTILFVDEVHRFNKS 121

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++   P +ED  +  +    E PS       LSR  +    +        L+D   +  
Sbjct: 122 QQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLT------LEDIEQV-- 173

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
                 ++       RG   + + + D     IA    G  R A   L  + D AE   +
Sbjct: 174 ------LDQAMQDKARGYGESDIVLPDNTRRMIAELVNGDARRALNTLEMMADMAETTAS 227

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
               RE+    L  ++ ++              AR    G    + ISA     R +  D
Sbjct: 228 G--QRELTPQLLNEVSGERS-------------ARFDNKGDRFYDLISALHKSVRGSAPD 272

Query: 299 LIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
               +  +       P    R L+ IA + +G   P 
Sbjct: 273 AALYWYARIITAGGDPLYVARRLLAIASEDVGNADPR 309


>gi|294506999|ref|YP_003571057.1| ATPase, AAA family protein [Salinibacter ruber M8]
 gi|294343327|emb|CBH24105.1| ATPase, AAA family protein [Salinibacter ruber M8]
          Length = 456

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 76/345 (22%), Positives = 128/345 (37%), Gaps = 44/345 (12%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M D     +    +E A ++  +RPRTL+EF GQ       K+   A +A  + +  VLF
Sbjct: 1   MPDLFDEQAEQARKERAPLADRMRPRTLDEFVGQEHFIGEGKLLRRAIEA--DRVTSVLF 58

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFID 112
            GPPG GKTTLA+++AR    +F S +  V++   DL   +   ++       R +LFID
Sbjct: 59  CGPPGTGKTTLARIIARTTEAHFTSLNA-VLSGVADLREAVQKAKNRLKHHQTRTILFID 117

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           E+HR +   ++ L P +ED  +  +    E P        +SR  +             +
Sbjct: 118 EVHRFNTAQQDALLPHVEDGTVTFIGATTENPYFEVNDALVSRSRVFELEPLEEEHLRQV 177

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
                              T  +RG     + VT+ A   +   + G  R     L    
Sbjct: 178 --------------AAMALTDAERGYGDRDVEVTEAALDHLIGTANGDARSVLNALELAV 223

Query: 231 DFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
           +        T+  +                D  +             G    +TISA + 
Sbjct: 224 ETTAPDAEGTVYID---------------LDVAEDSIQQRAVLYDKEGDAHFDTISAFIK 268

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPRG--RLLMPIAWQHLGIDIPH 333
             R +  D    ++ +  +    PR   R ++  A + +G+  P 
Sbjct: 269 SLRGSDPDAALYWLARMLYAGEEPRFILRRMLIFAAEDVGLADPQ 313


>gi|83814895|ref|YP_445120.1| recombination factor protein RarA [Salinibacter ruber DSM 13855]
 gi|83756289|gb|ABC44402.1| ATPase, AAA family protein [Salinibacter ruber DSM 13855]
          Length = 456

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 77/345 (22%), Positives = 129/345 (37%), Gaps = 44/345 (12%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M D     +    QE A ++  +RPRTL+EF GQ       K+   A +A  + +  VLF
Sbjct: 1   MPDLFDEQAEQARQERAPLADRMRPRTLDEFVGQEHFIGEGKLLRRAIEA--DRVTSVLF 58

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFID 112
            GPPG GKTTLA+++AR    +F S +  V++   DL   +   ++       R +LFID
Sbjct: 59  CGPPGTGKTTLARIIARTTEAHFTSLNA-VLSGVTDLREAIQKAKNRLKHHQTRTILFID 117

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           E+HR +   ++ L P +ED  +  +    E P        +SR  +             +
Sbjct: 118 EVHRFNTAQQDALLPHVEDGTVTFIGATTENPYFEVNDALVSRSRVFELEPLEEEHLRQV 177

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
                              T  +RG     + +T+EA   +   + G  R     L    
Sbjct: 178 --------------AAMALTDAERGYGDRDVEITEEALDHLIGTANGDARSVLNALELAV 223

Query: 231 DFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
           +        T+  +                D  +             G    +TISA + 
Sbjct: 224 ETTAPDAEGTVYID---------------LDVAEDSIQQRAVLYDKEGDAHFDTISAFIK 268

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPRG--RLLMPIAWQHLGIDIPH 333
             R +  D    ++ +  +    PR   R ++  A + +G+  P 
Sbjct: 269 SLRGSDPDAALYWLARMLYAGEEPRFILRRMLIFAAEDVGLADPQ 313


>gi|15597809|ref|NP_251303.1| recombination factor protein RarA [Pseudomonas aeruginosa PAO1]
 gi|107102135|ref|ZP_01366053.1| hypothetical protein PaerPA_01003185 [Pseudomonas aeruginosa PACS2]
 gi|218891226|ref|YP_002440092.1| recombination factor protein RarA [Pseudomonas aeruginosa LESB58]
 gi|254235599|ref|ZP_04928922.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|254241046|ref|ZP_04934368.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|296388928|ref|ZP_06878403.1| recombination factor protein RarA [Pseudomonas aeruginosa PAb1]
 gi|9948679|gb|AAG06001.1|AE004690_1 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
 gi|126167530|gb|EAZ53041.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|126194424|gb|EAZ58487.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|218771451|emb|CAW27218.1| putative ATPase associated with chromosome architecture
           [Pseudomonas aeruginosa LESB58]
          Length = 441

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 79/343 (23%), Positives = 128/343 (37%), Gaps = 52/343 (15%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD     S  V+Q     + LRP  L+E+ GQ    +  K   EA +    AL  ++F G
Sbjct: 1   MDLFR--SEPVAQ--PLAARLRPANLDEYVGQEHLLARGKPLREALEQ--GALHSMIFWG 54

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALL-------TNLEDRDVLFIDEI 114
           PPG+GKTTLA+++A+    +F + S  V++   ++   +            R +LF+DE+
Sbjct: 55  PPGVGKTTLARLLAQVSDAHFETISA-VLSGVKEIRQAVEVAKQHAAQYGRRTILFVDEV 113

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++   P +ED  L  +    E PS       LSR  +    +        L+ 
Sbjct: 114 HRFNKSQQDAFLPYVEDGTLIFIGATTENPSFELNNALLSRARVYVLKSLDE---AALRK 170

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
             G  +  +            +G     L + +E+   +   + G  R    LL    D 
Sbjct: 171 LVGRALNED------------KGLGKRKLRLPEESFQVLLAAADGDGRRLLNLLENAADL 218

Query: 233 AEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEP 292
           AE         EI+   L  L  D                R   GG    + ISA     
Sbjct: 219 AE------DGSEISPELLQNLLGD-------------TRRRFDKGGEAFYDQISALHKSV 259

Query: 293 RDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           R +  D    +  +       P    R ++ +A + +G   P 
Sbjct: 260 RGSNPDAALYWFARMLDGGCDPLYIARRVVRMASEEVGNADPR 302


>gi|332526025|ref|ZP_08402163.1| recombination factor protein RarA [Rubrivivax benzoatilyticus JA2]
 gi|332109868|gb|EGJ10496.1| recombination factor protein RarA [Rubrivivax benzoatilyticus JA2]
          Length = 447

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 71/325 (21%), Positives = 113/325 (34%), Gaps = 52/325 (16%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              LRP TL E  GQ       +    A +  +  +  ++  GPPG+GKTTLA++VA  +
Sbjct: 29  AERLRPHTLAEVIGQQHLLGPGRPLRVAFE--SGRIPSMILWGPPGVGKTTLARLVAGSV 86

Query: 79  GVNFRSTSGPVIAKAGDLA---ALLTNLEDR---DVLFIDEIHRLSIIVEEILYPAMEDF 132
              F   S  V+A   D+     L  +   R    V+F+DE+HR +   ++   P +E  
Sbjct: 87  DAQFLVLSA-VLAGVKDIRDAVELAKDARRRGQATVVFVDEVHRFNKAQQDAFLPHVESG 145

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
               +    E PS       LSR T+    +        L DR    +            
Sbjct: 146 LFTFIGATTENPSFEVNSALLSRATVHVLKSLADEDLGVLLDRARALLGAPPLTDSARTR 205

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           +V                             A RLL    +   +A       E+ +A L
Sbjct: 206 LVAHADG-----------------------DARRLLNAYDNLVAIAGD---VPELDEAVL 239

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
            R                 ++ R   GG    +TISA     R +  D    ++ +    
Sbjct: 240 ERALG-------------ELLRRYDKGGDQFFDTISALHKSVRGSDPDAAMYWLARLLDG 286

Query: 311 QRTPR--GRLLMPIAWQHLGIDIPH 333
              PR   R ++ +A + +G+  P 
Sbjct: 287 GADPRYAARRIVRMAAEDIGLADPR 311


>gi|153000734|ref|YP_001366415.1| recombination factor protein RarA [Shewanella baltica OS185]
 gi|151365352|gb|ABS08352.1| AAA ATPase central domain protein [Shewanella baltica OS185]
          Length = 443

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 76/337 (22%), Positives = 118/337 (35%), Gaps = 48/337 (14%)

Query: 8   LSRNVSQE-DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           LS N + +     + +RPRT+ E+ GQ       +   +A +A       ++  GPPG G
Sbjct: 4   LSFNFAPDFRPLAARMRPRTIAEYIGQAHLLGEGQPLRKALEAGRA--HSMMLWGPPGTG 61

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSI 119
           KTTLA+++A     +    S  V +   D+ A +   +        R +LF+DE+HR + 
Sbjct: 62  KTTLAELIAHYSNAHVERISA-VTSGVKDIRAAIEQAKAVAESRGQRTLLFVDEVHRFNK 120

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             ++   P +ED  +  +    E PS       LSR        RV L+     D     
Sbjct: 121 SQQDAFLPFIEDGTVIFIGATTENPSFEINNALLSR-------ARVYLIKRLSHDEIAHI 173

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
           +     + E       RG       +  +    +A    G  R A  L+  + D      
Sbjct: 174 VTQALSDTE-------RGLGQHQFVMPTDVLTTLAQLCDGDARKALNLIELMSDMLADGG 226

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
             T    I  A       DK G    DL                   ISA     R +  
Sbjct: 227 TFTTEMLIQVAGHQVAGFDKNGDQFYDL-------------------ISAVHKSIRGSAP 267

Query: 298 DLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           D    +  +       P    R L+ IA + +G   P
Sbjct: 268 DAALYWFCRILEGGGDPLYVARRLLAIASEDVGNADP 304


>gi|302389240|ref|YP_003825061.1| Recombination protein MgsA [Thermosediminibacter oceani DSM 16646]
 gi|302199868|gb|ADL07438.1| Recombination protein MgsA [Thermosediminibacter oceani DSM 16646]
          Length = 446

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 75/346 (21%), Positives = 132/346 (38%), Gaps = 50/346 (14%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
            ++  L    + +       +RPR L+EF GQ       K+  +  +   + +  ++  G
Sbjct: 3   FEQSSLFDGEIKKSAPLADRMRPRNLDEFVGQDHLLGRGKILRKLIE--NDLITSMILWG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIH 115
           PPG+GKTTLA ++A E+      T   V++   ++  ++   +       R ++FIDEIH
Sbjct: 61  PPGVGKTTLAMIIA-EMTRARFVTFSAVLSGIKEVKEVMKEAQERRRYGQRTLVFIDEIH 119

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P +E   + L+    E PS       LSR  +         + NPL   
Sbjct: 120 RFNKSQQDAFLPYVEKGDIILIGATTENPSFELNSALLSRSKV--------FVMNPLSPD 171

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR--D 231
             + +       E      +RG     + V DE   +IA+ + G  R+A   L       
Sbjct: 172 DLMVLLKRALRDE------ERGLGRFKVRVEDEQLYKIAVFANGDARVALNTLEIAVLSS 225

Query: 232 FAEVAHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGL 289
             + +    IT E+   A  R     DK G +  +L                   ISA  
Sbjct: 226 VPDDSGQIRITDEVLKEAFQRKTLLYDKGGEEHYNL-------------------ISAFH 266

Query: 290 SEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
              R++  D    ++ +       P    R ++  A + +G+  P 
Sbjct: 267 KSLRNSDSDAALYWLARMLEAGEDPLYVARRMIRFASEDVGLADPR 312


>gi|319426382|gb|ADV54456.1| AAA ATPase central domain protein [Shewanella putrefaciens 200]
          Length = 443

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 77/337 (22%), Positives = 125/337 (37%), Gaps = 48/337 (14%)

Query: 8   LSRNVSQE-DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           LS N + +     + +RPR++ E+ GQ       +   +A +A       ++  GPPG G
Sbjct: 4   LSFNFAPDFRPLAARMRPRSIAEYIGQAHLLGEGQPLRKALEAGRA--HSMMLWGPPGTG 61

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSI 119
           KTTLA+++A+    +    S  V +   ++ A +   +        R +LF+DE+HR + 
Sbjct: 62  KTTLAELIAQYSNAHVERISA-VTSGVKEIRAAIEQAKAIAESRGQRTLLFVDEVHRFNK 120

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             ++   P +ED  +  +    E PS       LSR        RV L+     D     
Sbjct: 121 SQQDAFLPFIEDGTVIFIGATTENPSFEINNALLSR-------ARVYLIKRLSNDEIAHI 173

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
           +     + E       RG  L  L + +    ++A    G  R A  LL  + D   V+ 
Sbjct: 174 VTQALADTE-------RGLGLRQLEMPENVLIKLAQLCDGDARKALNLLELMSDM--VSD 224

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
             T T E+             GFD                G    + ISA     R +  
Sbjct: 225 NDTFTHEMLV---QVAGHQVAGFD--------------KNGDQFYDLISAVHKSIRGSAP 267

Query: 298 DLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           D    +  +       P    R L+ IA + +G   P
Sbjct: 268 DAALYWYCRILEGGGDPLYVARRLLAIASEDVGNADP 304


>gi|291550085|emb|CBL26347.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [Ruminococcus torques L2-14]
          Length = 438

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 77/343 (22%), Positives = 125/343 (36%), Gaps = 44/343 (12%)

Query: 2   MDREGLLSR-NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD    +   N  +E    S +RP TL+E  GQ       K+   A KA  + L  ++F 
Sbjct: 1   MDLFDYMRETNKEKESPLASRMRPVTLDEVVGQKHIIGKDKLLYRAIKA--DKLSSLIFY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDE 113
           GPPG GKTTLA+V+A      F+  +  V A   D+  ++   +D       + +LFIDE
Sbjct: 59  GPPGTGKTTLAKVIAHTTSAEFKQINATV-AGKKDMEEVVKEAKDLQGMYGKKTILFIDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++ L P +ED  L L+    E P        +SR ++             L 
Sbjct: 118 IHRFNKGQQDYLLPFVEDGTLILIGATTENPYFEVNGALISRSSIFELRPLEKTDIKELL 177

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R                   ++G       + D+A   +A  S G  R A   +     
Sbjct: 178 LR--------------AVNDTEKGLGSFHAVIEDDALEFLADVSGGDARNALNAIEL--- 220

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
                    +T + ++          +  D         +      G    + ISA +  
Sbjct: 221 -------GVLTTDRSED-----GQIHITLDVASECIQKRVVNYDKKGDNHYDIISAFIKS 268

Query: 292 PRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
            R +  D    Y+ +  +     +   R +M  A + +G   P
Sbjct: 269 MRGSDPDAAVFYLAKMLYAGEDVKFIARRIMICASEDVGNADP 311


>gi|301170352|emb|CBW29958.1| recombination protein [Haemophilus influenzae 10810]
          Length = 446

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 73/331 (22%), Positives = 119/331 (35%), Gaps = 51/331 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP +LE++ GQ       K   +A +A    +  ++  GPPG GKTTLA+++A+
Sbjct: 15  PLAAKMRPTSLEQYFGQSHLIGEGKPLRKAIQAGH--IHSMILWGPPGTGKTTLAEIIAQ 72

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            +       S        I +A D A      + + +LF+DE+HR +   ++   P +ED
Sbjct: 73  RINAEVERISAVTSGIKEIREAIDRAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIED 132

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             +  +    E PS       LSR        RV +L +         ++    + E   
Sbjct: 133 GTVIFIGATTENPSFELNNALLSR-------ARVYVLKSLTTAEIEQVLQQAVEDPE--- 182

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
               RG     L + +     +A    G  R+A   L  V D AE               
Sbjct: 183 ----RGLGKERLILEENLLQVLAEYVNGDARLALNCLELVVDMAEETENGK--------- 229

Query: 250 LLRLAIDKMGFDQLDLRYLTMI-----ARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
                       ++D   L  +     AR    G    + ISA     R +  D    + 
Sbjct: 230 ------------KIDRTLLKEVLGERQARFDKQGDRFYDLISALHKSVRGSAPDAALYWY 277

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +       P    R L+ IA + +G   P 
Sbjct: 278 ARILTAGGDPLYVARRLLAIASEDVGNADPR 308


>gi|163815250|ref|ZP_02206627.1| hypothetical protein COPEUT_01410 [Coprococcus eutactus ATCC 27759]
 gi|158449445|gb|EDP26440.1| hypothetical protein COPEUT_01410 [Coprococcus eutactus ATCC 27759]
          Length = 443

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 72/347 (20%), Positives = 126/347 (36%), Gaps = 51/347 (14%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD    +  N S++D+ ++  +RP +L++  GQ       K+   A KA  + +  ++F 
Sbjct: 1   MDLFEYMRENASEDDSPLAKRMRPVSLDDVVGQEHIIGKDKLLYRAIKA--DKISSLIFY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRDVLFIDEI 114
           GPPG GKTTLA V+A      FR  +     K        +   +      R +LFIDEI
Sbjct: 59  GPPGTGKTTLAMVIANTTKAEFRQLNATTAGKKDMEQVVNEARDIKAMYGKRTILFIDEI 118

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++ L P +ED  + L+    E P        +SR       + +  L    ++
Sbjct: 119 HRFNKSQQDYLLPFVEDGTVILIGATTENPYFEVNGALISR-------SHIFQLHPLSKE 171

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
                I    Y         + G       + ++A   ++  + G  R A   +      
Sbjct: 172 DIKKLIHKAVYS--------ENGMGAFDADIDEDAEDFLSDMASGDARNALNAIELGVLS 223

Query: 233 AEVAHAK----TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAG 288
            E +       T+           +  DK G +  D+                   ISA 
Sbjct: 224 TERSDDGRIHITLPVAEECIQKRAIRYDKDGDNHYDI-------------------ISAF 264

Query: 289 LSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +   R +  D    Y+ +  +     +   R +M  A + +    P+
Sbjct: 265 IKSMRGSDPDAAVFYLAKMLYGGEDIKFIARRIMICASEDVSNADPN 311


>gi|85859697|ref|YP_461899.1| recombination factor protein RarA [Syntrophus aciditrophicus SB]
 gi|85722788|gb|ABC77731.1| ATPase, AAA family [Syntrophus aciditrophicus SB]
          Length = 478

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 85/352 (24%), Positives = 134/352 (38%), Gaps = 63/352 (17%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           + DR    +    +  AD   +RP TL+EF GQ        +   A +   + L  V+F 
Sbjct: 26  LFDRNNETTEQSRRPLAD--RMRPETLDEFFGQEHLLKKHSLLRRAIEE--DRLFSVIFW 81

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDE 113
           GPPG GKTTLA++VA E    F + S  V++   +L  ++   E        + VLF+DE
Sbjct: 82  GPPGSGKTTLARIVAGETKAYFAAFSA-VLSGVKELRKVVEEAEARWQNNRQKTVLFVDE 140

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAAT-----TRVGLL 166
           IHR +   ++   P +E   + L+    E PS   +   LSR  ++          V +L
Sbjct: 141 IHRFNKAQQDAFLPHVESGLITLIGATTENPSFEVIAPLLSRCRVLVLKPFSDEDLVRIL 200

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
              L+DR                   +RG    GL +  +A   +   + G  R A   L
Sbjct: 201 NRVLRDR-------------------RRGLGNLGLELDQDALAYLVHTADGDARTALNSL 241

Query: 227 RRVRDF--AEVAHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGI 282
             V     A    +  I+R   + AL +     DK G +  +L                 
Sbjct: 242 EAVASLLAAGEGQSSRISRVQVEEALQKKGLQYDKSGAEHYNL----------------- 284

Query: 283 ETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
             ISA     R +  D    ++ +       P    R ++  A + +G   P
Sbjct: 285 --ISAFHKSLRGSDPDAALYWLGRMLTAGEDPLYIARRMVRFASEDVGNADP 334


>gi|71897620|ref|ZP_00679865.1| AAA ATPase, central region [Xylella fastidiosa Ann-1]
 gi|71732523|gb|EAO34576.1| AAA ATPase, central region [Xylella fastidiosa Ann-1]
          Length = 455

 Score =  157 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 74/327 (22%), Positives = 123/327 (37%), Gaps = 45/327 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RPRTL E  GQ    +  +    A    +  +  ++  GPPG GKTTL+ ++A 
Sbjct: 22  PLAERMRPRTLHEMVGQKRLLAPDRALHRAV--ASGHVHSMILWGPPGCGKTTLSLLLAH 79

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAME 130
            +   FRS S  V++   ++  +L           R VLF+DE+HR + + ++   P +E
Sbjct: 80  YIDAEFRSVSA-VLSGLPEVRQILAEAAQRFSEGRRTVLFVDEVHRFNKMQQDAFLPHIE 138

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
              +  +    E PS       LSR        RV +L         + ++    + E  
Sbjct: 139 RGSIIFVGATTENPSFELNSALLSRC-------RVHVLEAVSSQDIVVALQRALQDTE-- 189

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
                RG     + V++    EIA  + G  R A  LL    + A+    + IT ++   
Sbjct: 190 -----RGLGGQKIEVSEAYLLEIAKAADGDVRRALTLLEIAAELAQ-DEDEQITADLLSQ 243

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L             D        R    G    + ISA     R +  D    ++++  
Sbjct: 244 VLA------------DRS-----RRFDKRGEQFYDQISALHKSVRSSNPDAALYWLLRML 286

Query: 309 FIQRTP--RGRLLMPIAWQHLGIDIPH 333
                P    R L  +A + +G+  P 
Sbjct: 287 DGGCDPIYLARRLTRMAIEDIGLADPR 313


>gi|304408765|ref|ZP_07390386.1| AAA ATPase central domain protein [Shewanella baltica OS183]
 gi|307302768|ref|ZP_07582523.1| AAA ATPase central domain protein [Shewanella baltica BA175]
 gi|304352586|gb|EFM16983.1| AAA ATPase central domain protein [Shewanella baltica OS183]
 gi|306913128|gb|EFN43550.1| AAA ATPase central domain protein [Shewanella baltica BA175]
          Length = 443

 Score =  157 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 76/337 (22%), Positives = 118/337 (35%), Gaps = 48/337 (14%)

Query: 8   LSRNVSQE-DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           LS N + +     + +RPRT+ E+ GQ       +   +A +A       ++  GPPG G
Sbjct: 4   LSFNFAPDFRPLAARMRPRTIAEYIGQAHLLGEGQPLRKALEAGRA--HSMMLWGPPGTG 61

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSI 119
           KTTLA+++A     +    S  V +   D+ A +   +        R +LF+DE+HR + 
Sbjct: 62  KTTLAELIAHYSNAHVERISA-VTSGVKDIRAAIEQAKAVAESRGQRTLLFVDEVHRFNK 120

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             ++   P +ED  +  +    E PS       LSR        RV L+     D     
Sbjct: 121 SQQDAFLPFIEDGTVIFIGATTENPSFEINNALLSR-------ARVYLIKRLSHDEIAHI 173

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
           +     + E       RG       +  +    +A    G  R A  L+  + D      
Sbjct: 174 VTQALSDTE-------RGLGQRQFVMPTDVLTTLAQLCDGDARKALNLIELMSDMLADGG 226

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
             T    I  A       DK G    DL                   ISA     R +  
Sbjct: 227 TFTTEMLIQVAGHQVAGFDKNGDQFYDL-------------------ISAVHKSIRGSAP 267

Query: 298 DLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           D    +  +       P    R L+ IA + +G   P
Sbjct: 268 DAALYWFCRILEGGGDPLYVARRLLAIASEDVGNADP 304


>gi|167624139|ref|YP_001674433.1| recombination factor protein RarA [Shewanella halifaxensis HAW-EB4]
 gi|167354161|gb|ABZ76774.1| AAA ATPase central domain protein [Shewanella halifaxensis HAW-EB4]
          Length = 443

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 76/327 (23%), Positives = 122/327 (37%), Gaps = 47/327 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP  LE++ GQ       K   +A +A       ++F GPPG GKTTLA++VA 
Sbjct: 14  PLAARMRPERLEQYIGQSHLLGEGKPLRQALEAGRA--HSMMFWGPPGTGKTTLAELVAH 71

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAM 129
               +    S  V +   ++ + + + +        R +LF+DE+HR +   ++   P +
Sbjct: 72  YANAHVERISA-VTSGVKEIRSAIEHAKNVAQSRGQRTLLFVDEVHRFNKSQQDAFLPFI 130

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ED  +  +    E PS       LSR        RV L+     +  G  ++    + E 
Sbjct: 131 EDGTVIFIGATTENPSFEINNALLSR-------ARVYLIKQLEPEEIGQIVQQALEDEE- 182

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
                 RG     L +  + + ++A    G  R A  L+  + D  +   A T    IA 
Sbjct: 183 ------RGLGKRKLLLPADVSLKLAQTCDGDARKALNLIELMSDMLKDGEAFTEEMIIAV 236

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           A       DK G    DL                   ISA     R +  D    +  + 
Sbjct: 237 AGQQLAGFDKNGDQYYDL-------------------ISAVHKSIRGSAPDAALYWFCRM 277

Query: 308 GFIQRTPR--GRLLMPIAWQHLGIDIP 332
                 P    R L+ IA + +G   P
Sbjct: 278 LEGGCDPLYIARRLLAIASEDIGNADP 304


>gi|160878660|ref|YP_001557628.1| recombination factor protein RarA [Clostridium phytofermentans
           ISDg]
 gi|160427326|gb|ABX40889.1| AAA ATPase central domain protein [Clostridium phytofermentans
           ISDg]
          Length = 444

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 79/348 (22%), Positives = 129/348 (37%), Gaps = 52/348 (14%)

Query: 2   MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD    +  N  ++++ + S LRP  L E  GQ       K+   A  A  + L  V+F 
Sbjct: 1   MDLFEYMRENTKEKESPLASRLRPTKLTEVVGQSHIIGEDKLLYRAIMA--DKLGSVIFY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDE 113
           GPPG GKTTLA+V+A     NF+  +    A   D+ A++   +        + +LF+DE
Sbjct: 59  GPPGTGKTTLAKVIANTTSSNFQQINA-TSAGKKDMEAVIEQAKQTLGMYGKKTILFVDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++ L P +ED  + L+    E P        +SR  +             L 
Sbjct: 118 IHRFNKGQQDYLLPFVEDGTIVLVGATTENPYFEVNSALISRSIVFELKPLEQNDIKELL 177

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R                T  ++G       + D+A   +A  + G  R A   +     
Sbjct: 178 IR--------------AITDKEKGLGAYHAVMEDDALDFLANAANGDARSALNAIELGVL 223

Query: 232 FAEVAHAK--TITREIADAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISA 287
             + +      IT E+A   + +     DK G +  D                   TISA
Sbjct: 224 TTKRSEDGFIHITLEVASECIQKRVLKYDKSGDNHYD-------------------TISA 264

Query: 288 GLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +   R +  D    Y+ +  +         R +M  A + +    P+
Sbjct: 265 FIKSMRGSDPDAAIYYLAKMLYAGEDVAFIARRIMICAAEDVSNADPN 312


>gi|261868432|ref|YP_003256354.1| recombination factor protein RarA [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413764|gb|ACX83135.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 446

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 74/343 (21%), Positives = 124/343 (36%), Gaps = 55/343 (16%)

Query: 8   LSRNVSQED--ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            S + ++ D     + +RP TL ++ GQ       K   +A +A    +  ++F GPPG 
Sbjct: 4   FSFDFNENDFRPLAARMRPTTLAQYCGQSHLLGEGKPLRKAIEA--GYVHSMIFWGPPGT 61

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSI 119
           GKTTLA+++A  + V     S  V +   ++   +   +       R + F+DE+HR + 
Sbjct: 62  GKTTLAEIIAHRINVEVERISA-VTSGIKEIREAIDKAKQNKLAGLRTIFFVDEVHRFNK 120

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             ++   P +ED  +  +    E PS       LSR        RV +L           
Sbjct: 121 SQQDAFLPHIEDGTIIFIGATTENPSFELNNALLSR-------ARVYILKPLSAQEIEQV 173

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
           ++    + E+       G     L + +     +A    G  R+A   L  + D A  + 
Sbjct: 174 LQQAIDDPEN-------GLGKVRLNLQENLLSLLAEYVNGDARLALNCLEMMVDMAGESE 226

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMI-----ARNFGGGPVGIETISAGLSEP 292
              I                     LD   LT +     AR    G +  + ISA     
Sbjct: 227 NGKI---------------------LDRTLLTEVLGERQARFDKQGDLFYDFISALHKSI 265

Query: 293 RDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           R +  D    +  +       P    R L+ IA + +G   P 
Sbjct: 266 RGSAPDAALYWYARIITAGGDPLYVARRLLAIASEDVGNADPR 308


>gi|257464779|ref|ZP_05629150.1| recombination factor protein RarA [Actinobacillus minor 202]
 gi|257450439|gb|EEV24482.1| recombination factor protein RarA [Actinobacillus minor 202]
          Length = 426

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 77/326 (23%), Positives = 117/326 (35%), Gaps = 51/326 (15%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR L E+ GQ       K    A +++      ++F GPPG GKTTLA+++A     +
Sbjct: 1   MRPRNLSEYIGQHHLIGEGKPLRRAIESKH--PHSMIFWGPPGTGKTTLAEIIAYHFDAD 58

Query: 82  FRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
               S        I +A + A L      R +LF+DE+HR +   ++   P +ED  +  
Sbjct: 59  VERLSAVTSGIKEIREAIERAKLNRQTGRRTLLFVDEVHRFNKSQQDAFLPYIEDGTIIF 118

Query: 137 M--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           +    E PS       LSR  +         +  PLQ    + +  N    +       R
Sbjct: 119 IGATTENPSFELNNALLSRARV--------YILKPLQSADILLVLQNALNDK------TR 164

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
           G     + + D     +A    G  R A   L ++ D A    A  +             
Sbjct: 165 GLGAEKIVLKDNVLNLLADYVNGDARYALNCLEQMSDMATQTEAGKLF------------ 212

Query: 255 IDKMGFDQLDLRYLTMI-----ARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
                    DL  LT I     AR    G    + ISA     R +  D    +  +   
Sbjct: 213 ---------DLNLLTEILGERLARFDKSGDRYYDLISALHKSIRGSSPDGALYWYARILT 263

Query: 310 IQRTPR--GRLLMPIAWQHLGIDIPH 333
               P    R L+ IA + +G   P 
Sbjct: 264 AGGDPLYVARRLLAIASEDIGNADPR 289


>gi|86147114|ref|ZP_01065431.1| hypothetical protein MED222_12378 [Vibrio sp. MED222]
 gi|85835179|gb|EAQ53320.1| hypothetical protein MED222_12378 [Vibrio sp. MED222]
          Length = 449

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 77/342 (22%), Positives = 117/342 (34%), Gaps = 42/342 (12%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M    L            + +RP T+E++ GQ       K    A +A    +  ++  G
Sbjct: 1   MSNYSLDFAGDEDFRPLAARMRPETVEQYIGQQHILGPGKPLRRALEAGH--IHSMILWG 58

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDL------AALLTNLEDRDVLFIDEIH 115
           PPG GKTTLA+V A          S  V +   D+      A        R +LF+DE+H
Sbjct: 59  PPGTGKTTLAEVAANYANAEVERVSA-VTSGVKDIRIAIEKARENKQAGRRTILFVDEVH 117

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P +ED  +  +    E PS       LSR  +   T+      + L  R
Sbjct: 118 RFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNALLSRARVYKLTSLNTEDIS-LVIR 176

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
             I                QRG         D     +A    G  R++   L  + D A
Sbjct: 177 QAI-------------EDKQRGLGDVSADFADNVLDRLAELVNGDARMSLNYLELLYDMA 223

Query: 234 EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
           E        + I    L  +A +K             +AR    G +  + ISA     R
Sbjct: 224 EDNDKGE--KAITLQLLAEVAGEK-------------VARFDNKGDIWYDLISAVHKSIR 268

Query: 294 DAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +  D    +  +       P    R L+ IA + +G   P 
Sbjct: 269 GSNPDGALYWSARMIAAGCDPLYIVRRLLAIASEDIGNADPR 310


>gi|145299386|ref|YP_001142227.1| recombination factor protein RarA [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142852158|gb|ABO90479.1| ATPase, AAA family [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 447

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 73/327 (22%), Positives = 116/327 (35%), Gaps = 43/327 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP+ L+++ GQ       K   +A  A       ++  GPPG GKTTLA+++A 
Sbjct: 16  PLAARMRPQDLDQYIGQQHILGPDKPLRKAILAGH--CHSMILWGPPGTGKTTLAELMAH 73

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130
                    S  V +   ++ A +   ++      R +LF+DE+HR +   +++  P +E
Sbjct: 74  YCQAEVERLSA-VTSGIKEIRAAIDKAKENSWRGVRTILFVDEVHRFNKSQQDVFLPHIE 132

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           D  +  +    E PS       LSR        RV LL    +D     I     +    
Sbjct: 133 DGTITFIGATTENPSFELNNALLSR-------ARVYLLKRLEEDDILAMIDQAMTD---- 181

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
                RG     L         +A    G  R +   L  + D AE   A     + A  
Sbjct: 182 ----SRGLNDPALTFAPGVKEALAKAVDGDGRKSLNYLELLADMAETNGAGERVIDSALL 237

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           A +                   +AR   GG    + ISA     R +  D    +  +  
Sbjct: 238 AAVVGEH---------------VARFDKGGDHFYDLISAVHKSIRGSAPDAALYWYARMV 282

Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIPH 333
                P    R L+ IA + +G   P 
Sbjct: 283 SAGCDPLYIARRLLAIASEDVGNADPR 309


>gi|308049686|ref|YP_003913252.1| Recombination protein MgsA [Ferrimonas balearica DSM 9799]
 gi|307631876|gb|ADN76178.1| Recombination protein MgsA [Ferrimonas balearica DSM 9799]
          Length = 442

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 77/338 (22%), Positives = 127/338 (37%), Gaps = 49/338 (14%)

Query: 8   LSRNVSQE-DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           LS N   +     + +RP TL+++ GQ       K    A +A       +L  GPPG G
Sbjct: 4   LSLNFGPDFRPLAARMRPETLDDYVGQEHLLGPGKPLRAALEAGRA--HSMLLWGPPGTG 61

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSI 119
           KTTLA++VAR    +    S  V +   ++ A +   +D       + +LF+DE+HR + 
Sbjct: 62  KTTLAELVARYANAHVERISA-VTSGVKEIRAAIDKAKDIAAAHGRQTLLFVDEVHRFNK 120

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             ++   P +ED  +  +    E PS       LSR       TRV ++    +      
Sbjct: 121 SQQDAFLPHIEDGTVIFIGATTENPSFEVNNALLSR-------TRVYVIKKLEESAILSL 173

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
           ++    + +       +G     L++ +  A ++A    G  R A  LL  + D AE   
Sbjct: 174 LQHALTDPD-------KGLGKLNLSLPEPVARQLASLVDGDARRALNLLELMADMAEDGQ 226

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
                      ALL+    +             +AR    G    + ISA     R +  
Sbjct: 227 --------LSEALLKEVAGE------------PVARFDNKGDQFYDLISAVHKSVRGSNP 266

Query: 298 DLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           D    +  +       P    R  + IA + +G   P 
Sbjct: 267 DAALYWYCRILEGGGDPLYVARRCLAIASEDVGNADPR 304


>gi|313107649|ref|ZP_07793832.1| putative ATPase associated with chromosome architecture
           [Pseudomonas aeruginosa 39016]
 gi|310880334|gb|EFQ38928.1| putative ATPase associated with chromosome architecture
           [Pseudomonas aeruginosa 39016]
          Length = 441

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 74/328 (22%), Positives = 122/328 (37%), Gaps = 48/328 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + LRP  L+E+ GQ    +  K   EA +    AL  ++F GPPG+GKTTLA+++A+
Sbjct: 12  PLAARLRPANLDEYVGQEHLLARGKPLREALEQ--GALHSMIFWGPPGVGKTTLARLLAQ 69

Query: 77  ELGVNFRSTSGPVIAKAGDLAALL-------TNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
               +F + S  V++   ++   +            R +LF+DE+HR +   ++   P +
Sbjct: 70  VSDAHFETISA-VLSGVKEIRQAVEVAKQHAAQYGRRTILFVDEVHRFNKSQQDAFLPYV 128

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ED  L  +    E PS       LSR  +    +        L+   G  +  +      
Sbjct: 129 EDGTLIFIGATTENPSFELNNALLSRARVYVLKSLDE---AALRKLVGRALNED------ 179

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
                 +G     L + +E+   +   + G  R    LL    D AE         EI+ 
Sbjct: 180 ------KGLGKRKLRLPEESFQVLLAAADGDGRRLLNLLENAADLAE------DGSEISP 227

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
             L  L  D                R   GG    + ISA     R +  D    +  + 
Sbjct: 228 ELLQNLLGD-------------TRRRFDKGGEAFYDQISALHKSVRGSNPDAALYWFARM 274

Query: 308 GFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                 P    R ++ +A + +G   P 
Sbjct: 275 LDGGCDPLYIARRVVRMASEEVGNADPR 302


>gi|120598817|ref|YP_963391.1| recombination factor protein RarA [Shewanella sp. W3-18-1]
 gi|120558910|gb|ABM24837.1| Recombination protein MgsA [Shewanella sp. W3-18-1]
          Length = 443

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 77/337 (22%), Positives = 125/337 (37%), Gaps = 48/337 (14%)

Query: 8   LSRNVSQE-DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           LS N + +     + +RPR++ E+ GQ       +   +A +A       ++  GPPG G
Sbjct: 4   LSFNFAPDFRPLAARMRPRSIAEYIGQAHLLGEGQPLRKALEAGRA--HSMMLWGPPGTG 61

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSI 119
           KTTLA+++A+    +    S  V +   ++ A +   +        R +LF+DE+HR + 
Sbjct: 62  KTTLAELIAQYSNAHVERISA-VTSGVKEIRAAIEQAKAIAESRGQRTLLFVDEVHRFNK 120

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             ++   P +ED  +  +    E PS       LSR        RV L+     D     
Sbjct: 121 SQQDAFLPFIEDGTVIFIGATTENPSFEINNALLSR-------ARVYLIKRLSNDEIAHI 173

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
           +     + E       RG  L  L + +    ++A    G  R A  LL  + D   V+ 
Sbjct: 174 VTQALADTE-------RGLGLRQLEMPESVLIKLAQLCDGDARKALNLLELMSDM--VSD 224

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
             T T E+             GFD                G    + ISA     R +  
Sbjct: 225 NDTFTLEMLV---QVAGHQVAGFD--------------KNGDQFYDLISAVHKSIRGSAP 267

Query: 298 DLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           D    +  +       P    R L+ IA + +G   P
Sbjct: 268 DAALYWYCRILEGGGDPLYVARRLLAIASEDVGNADP 304


>gi|319899072|ref|YP_004159165.1| ATPase, AAA family [Bartonella clarridgeiae 73]
 gi|319403036|emb|CBI76591.1| ATPase, AAA family [Bartonella clarridgeiae 73]
          Length = 438

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 78/334 (23%), Positives = 125/334 (37%), Gaps = 56/334 (16%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           V+Q       +RPR+L E  GQ            +    + +   ++F GPPG GKTT+A
Sbjct: 14  VNQNRPLAERMRPRSLNEVVGQNHLIGTEGFL--SLMVASGSFSSMIFWGPPGTGKTTIA 71

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEIL 125
           +++A E    F   S  +     +L  +    + R       +LFIDEIHR +   ++  
Sbjct: 72  RLLALETNFVFEQVSA-IFTGISELKKIFEAAQARLMSGYQTLLFIDEIHRFNRAQQDSF 130

Query: 126 YPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
            P MED  + L+    E PS       LSR  ++   +                     +
Sbjct: 131 LPFMEDGTIILVGATTENPSFELNAALLSRARVLTFRS---------------------H 169

Query: 184 EIEDLKTIVQRG--AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           + E L T+++R   A+   L + D A   +   S G  R+A  L   +   A     +  
Sbjct: 170 DNESLDTLLKRAEKAEGRSLPLDDHAREILIRVSDGDARVALTLAEEIWRVA--RSEEVF 227

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
             E   A + R A     +++ D  Y                 ISA     R +  D   
Sbjct: 228 NTETLQAVIQRRAPI---YNKRDSHY---------------NLISALHKSVRGSDPDAAL 269

Query: 302 PYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            Y+ +       P   GR L+ IA + +G+  P 
Sbjct: 270 YYLARMFDAGEDPLYVGRRLVRIAIEDIGLADPQ 303


>gi|227530160|ref|ZP_03960209.1| recombination ATPase [Lactobacillus vaginalis ATCC 49540]
 gi|227349913|gb|EEJ40204.1| recombination ATPase [Lactobacillus vaginalis ATCC 49540]
          Length = 441

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 74/347 (21%), Positives = 126/347 (36%), Gaps = 59/347 (17%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M +E L +++ +      + +RPR LEEF GQ +   N KV  +  +   + +  ++  G
Sbjct: 1   MHQESLFAQS-NNNTPLANRIRPRNLEEFMGQQQLIGNGKVLRDLIE--HDQVSSLILWG 57

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHR 116
           PPG+GKTTLA+++A++   +F + S        I K  + A       +R + FIDEIHR
Sbjct: 58  PPGVGKTTLAEIIAQQTKSHFITFSAVTSSIRDIRKIMEEAEKNREFGERTICFIDEIHR 117

Query: 117 LSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATT-----RVGLLTNP 169
            +   ++   P +E   + L+    E PS       LSR  +    +      + +L   
Sbjct: 118 FNKAQQDAFLPFVERGSIILIGATTENPSFEINSALLSRCKVFVLKSLTVNDIIAILKRA 177

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           +    G P     Y  + L  I                    A  + G  R+A   L   
Sbjct: 178 INHPDGFPGIKISYNDDVLTMI--------------------AEFANGDARVALNTLEMA 217

Query: 230 RDFAEVAHAKTITREIADAAL---LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETIS 286
              A   + +      +   L     L  D+ G +                       IS
Sbjct: 218 VLNANHHNHQVNLTIDSLKQLINTKSLRYDQHGEEHY-------------------NVIS 258

Query: 287 AGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
           A     R++  D    +  +       P    R L+  A + +G+  
Sbjct: 259 ALHKSMRNSDVDAAIYWCSRMIDGGEDPLYIARRLVRFASEDIGLAD 305


>gi|147673167|ref|YP_001216577.1| recombination factor protein RarA [Vibrio cholerae O395]
 gi|262170267|ref|ZP_06037954.1| ATPase AAA family [Vibrio cholerae RC27]
 gi|146315050|gb|ABQ19589.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|227012923|gb|ACP09133.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|262021282|gb|EEY39996.1| ATPase AAA family [Vibrio cholerae RC27]
          Length = 449

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 67/343 (19%), Positives = 111/343 (32%), Gaps = 44/343 (12%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M    L            + +RP+T+E++ GQ       K    A +A    +  ++  G
Sbjct: 1   MSNYSLDFSGDEDFRPLAARMRPQTVEQYIGQQHILGPGKPLRRALEAGH--IHSMILWG 58

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIH 115
           PPG GKTTLA+V A          S  V +   ++ A +           R +LF+DE+H
Sbjct: 59  PPGTGKTTLAEVAANYANAEVERVSA-VTSGVKEIRAAIEKARENKLSGRRTILFVDEVH 117

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGL-LTNPLQD 172
           R +   ++   P +ED  +  +    E PS       LSR  +   T+     +   L  
Sbjct: 118 RFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNALLSRARVYKLTSLNQQEILQALHQ 177

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
                                 G         D     +A    G  R++   L  + D 
Sbjct: 178 AIADTEC---------------GLGKVAAVFADNVLDRLAELVNGDARMSLNYLELLYDM 222

Query: 233 AEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEP 292
           A          ++   A +                   ++R    G +  + ISA     
Sbjct: 223 AREDDQGRKQIDLPLLAEVAGEK---------------VSRFDNKGDIWYDLISAVHKSI 267

Query: 293 RDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           R +  D    +  +       P    R L+ IA + +G   P 
Sbjct: 268 RGSDPDAALYWAARMISAGCDPLYIARRLLAIASEDVGNADPR 310


>gi|313902377|ref|ZP_07835780.1| Recombination protein MgsA [Thermaerobacter subterraneus DSM 13965]
 gi|313467308|gb|EFR62819.1| Recombination protein MgsA [Thermaerobacter subterraneus DSM 13965]
          Length = 513

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 78/337 (23%), Positives = 123/337 (36%), Gaps = 51/337 (15%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
             Q+      +RPRTLEEF GQ       ++   A +A  + L  ++  GPPG GKTTLA
Sbjct: 27  ARQQAPLAERMRPRTLEEFVGQQHLVGPGRLLRRAIEA--DRLGSIILWGPPGSGKTTLA 84

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEI 124
           +++AR    +F   +  V A  GDL  ++    +R        VLF+DE+HR +   ++ 
Sbjct: 85  RIIARTTRAHFEPLNA-VTAGVGDLRRVVEEARERWALEGRSTVLFVDEVHRWNRAQQDA 143

Query: 125 LYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           L P +E   + L+    E P    V   +SR  +             L  R         
Sbjct: 144 LLPHLESGLVALIGATTENPYFACVPPLVSRARIFRLEPLSDDDMRQLLLR--------- 194

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA--EVAHAKT 240
                     +RG       V   A   +   + G  R A   L              + 
Sbjct: 195 -----ALADPERGLGRYRAEVDPAALEHLVRVAGGDARTALNALELAVLTTPPGADGVRR 249

Query: 241 ITREIADAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
           IT   A+ ++ R   A D  G +  D                    +SA +   R +  D
Sbjct: 250 ITLAAAEESIQRRALAYDPAGDEHYDH-------------------MSALIKSIRGSDPD 290

Query: 299 LIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
               ++ +  +    PR   R L+  A + +G+  P 
Sbjct: 291 AAVYWLARMLYAGEDPRTIARRLLVHAAEDVGLADPR 327


>gi|327393324|dbj|BAK10746.1| ATPase AAA family YcaJ [Pantoea ananatis AJ13355]
          Length = 455

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 78/337 (23%), Positives = 121/337 (35%), Gaps = 42/337 (12%)

Query: 8   LSRNVSQED--ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           LS + S ED     + +RP TL+ + GQ    +  K    A +A    L  ++  GPPG 
Sbjct: 12  LSLDFSSEDFKPLAARMRPETLKHYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGT 69

Query: 66  GKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GKTTLA+++A     +    S        I +A + A L      R +LF+DE+HR +  
Sbjct: 70  GKTTLAEIIAHYGNADVERISAVTSGVKEIREAIERARLSKQAGRRTILFVDEVHRFNKS 129

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++   P +ED  +  +    E PS       LSR  +    +        + D      
Sbjct: 130 QQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLTTEDIEQVLD------ 183

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
                          RG   + + + +     IA    G  R A   L  + D AE    
Sbjct: 184 --------QAMQDADRGYGNSDILLPNNTRRMIAELVSGDARRALNTLEMMADMAETNAQ 235

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
               RE+    L  +A ++              AR    G    + ISA     R +  D
Sbjct: 236 GK--RELTPQLLTEVAGERS-------------ARFDNKGDRFYDLISALHKSVRGSAPD 280

Query: 299 LIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
               +  +       P    R L+ IA + +G   P 
Sbjct: 281 AALYWYARIITAGGDPLYVARRLLAIASEDVGNADPR 317


>gi|308186247|ref|YP_003930378.1| hypothetical protein Pvag_0727 [Pantoea vagans C9-1]
 gi|308056757|gb|ADO08929.1| Uncharacterized protein [Pantoea vagans C9-1]
          Length = 447

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 76/337 (22%), Positives = 123/337 (36%), Gaps = 42/337 (12%)

Query: 8   LSRNVSQED--ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           LS + S E+     + +RP TL+++ GQ       K    A +A    L  ++  GPPG 
Sbjct: 4   LSLDFSTENFKPLAARMRPETLKQYIGQQHLLGAGKPLPRAIEAGH--LHSMILWGPPGT 61

Query: 66  GKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GKTTLA+++A     +    S        I +A + A    +   R +LF+DE+HR +  
Sbjct: 62  GKTTLAEIIAHYGNADVERISAVTSGVKEIREAIERARQNKHAGRRTILFVDEVHRFNKS 121

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++   P +ED  +  +    E PS       LSR  +    +        + D      
Sbjct: 122 QQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLTAEDIEQVLD------ 175

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
                          RG   + + + D     IA    G  R A   L  + D AE+  +
Sbjct: 176 --------QAMQDKARGYGDSDIVLPDNTRRMIAELVNGDARRALNTLEMMADMAEITAS 227

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
               RE+    L  ++ ++              AR    G    + ISA     R +  D
Sbjct: 228 G--QRELTPQLLNEVSGERS-------------ARFDNKGDRFYDLISALHKSVRGSAPD 272

Query: 299 LIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
               +  +       P    R L+ IA + +G   P 
Sbjct: 273 AALYWYARIITAGGDPLYVARRLLAIASEDVGNADPR 309


>gi|254508488|ref|ZP_05120607.1| ATPase, AAA family [Vibrio parahaemolyticus 16]
 gi|219548600|gb|EED25606.1| ATPase, AAA family [Vibrio parahaemolyticus 16]
          Length = 428

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 70/322 (21%), Positives = 116/322 (36%), Gaps = 42/322 (13%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP TL+++ GQ       K    A +A    +  ++  GPPG GKTTLA+V A      
Sbjct: 1   MRPETLDQYIGQQHILGAGKPLRRALEAGH--IHSMILWGPPGTGKTTLAEVAANYANAE 58

Query: 82  FRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
               S  V +   ++ A +           R +LF+DE+HR +   ++   P +ED  + 
Sbjct: 59  VERVSA-VTSGVKEIRAAIERARENKLAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVT 117

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
            +    E PS       LSR        RV  LT+  Q   G+ ++    +        +
Sbjct: 118 FIGATTENPSFELNNALLSR-------ARVYKLTSLSQQDIGLALQQAINDE-------K 163

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           RG      A  +     ++    G  R++   L  + D AE          +   A +  
Sbjct: 164 RGLGKVEAAFDEGVLDRLSELVNGDARMSLNYLELLYDMAEEDAQGVKVITLPLLAEVAG 223

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
                            ++R    G +  + ISA     R +  D    +  +       
Sbjct: 224 EK---------------VSRFDNKGDIWYDLISAVHKSIRGSNPDAALYWSARMIAAGCD 268

Query: 314 PR--GRLLMPIAWQHLGIDIPH 333
           P    R L+ IA + +G   P 
Sbjct: 269 PLYIARRLLAIASEDVGNADPR 290


>gi|330958181|gb|EGH58441.1| recombination factor protein RarA [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 440

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 77/338 (22%), Positives = 123/338 (36%), Gaps = 49/338 (14%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L SR    +    + LR   L+E+ GQ    ++ K   EA +    AL  ++F GPPG+G
Sbjct: 3   LFSREPIAQ-PLAARLRATNLDEYVGQEHVLAHGKPLREALEQ--GALHSMIFWGPPGVG 59

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLT-------NLEDRDVLFIDEIHRLSI 119
           KTTLA+++A+    +F + S  V+A   ++   +            R +LF+DE+HR + 
Sbjct: 60  KTTLARLLAKVSDAHFETVSA-VLAGVKEIRQAVEVAKQQAGQYGKRTILFVDEVHRFNK 118

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             ++   P +ED  L  +    E PS       LSR  +    +        L +R    
Sbjct: 119 SQQDAFLPYVEDGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVNRALTE 178

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                           +G     L +++E    +   + G  R    LL    D AE   
Sbjct: 179 ---------------DKGLGQHKLRLSEEGFAMLMAAADGDGRRMLNLLENASDLAE--- 220

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
                 EI    L  L  D                R   GG    + ISA     R +  
Sbjct: 221 ---DGSEIDIELLQSLLGDSR-------------RRFDKGGEAFYDQISALHKSIRGSNP 264

Query: 298 DLIEPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
           D    +  +       P    R ++ +A + +G   P 
Sbjct: 265 DAALYWFARMIDGGCDPLYLARRVVRMASEDIGNADPR 302


>gi|288927100|ref|ZP_06420988.1| ATPase, AAA family [Prevotella buccae D17]
 gi|288336127|gb|EFC74520.1| ATPase, AAA family [Prevotella buccae D17]
          Length = 419

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 76/331 (22%), Positives = 125/331 (37%), Gaps = 52/331 (15%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +     +RPRTL+++ GQ        V     +     +   +  GPPG+GKTTLAQ++A
Sbjct: 2   EPLAERMRPRTLDDYVGQQHLVGPGAVLRRMIE--GGRISSFILWGPPGVGKTTLAQIIA 59

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPA 128
             L   F + S  V +   D+  ++              +LFIDEIHR S   ++ L  A
Sbjct: 60  NRLKTPFYTLSA-VTSGVKDVREVIERAGRNRFFDSLSPILFIDEIHRFSKSQQDSLLGA 118

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           +E   + L+    E PS   ++  LSR  L         +  PL+    + +       +
Sbjct: 119 VEKGVVTLIGATTENPSFEVIRPLLSRCQL--------YVLKPLEKEDLLRLLHRAVTED 170

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
               + +R  +LT           +   S G  R    +L  V +    A    IT  + 
Sbjct: 171 --TELRKRDIRLTQTDA-------LLRYSGGDARKLLNILELVVEACGDAPTVEITDRLV 221

Query: 247 DAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +  L +   A DK G    D+                   ISA +   R +  D    +M
Sbjct: 222 EERLQQNPLAYDKDGEMHYDI-------------------ISAFIKSIRGSDPDAALYWM 262

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +       P+   R L+  A + +G+  P+
Sbjct: 263 ARMIEGGEDPKFIARRLVISAAEDIGLANPN 293


>gi|288929609|ref|ZP_06423453.1| ATPase, AAA family [Prevotella sp. oral taxon 317 str. F0108]
 gi|288329114|gb|EFC67701.1| ATPase, AAA family [Prevotella sp. oral taxon 317 str. F0108]
          Length = 425

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 75/336 (22%), Positives = 127/336 (37%), Gaps = 61/336 (18%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +     +RPR+L+++ GQ        V     +     +   +  GPPG+GKTTLAQ+VA
Sbjct: 3   EPLAERMRPRSLDDYVGQKHLVGPNAVLRNMIE--GGRIPSFILWGPPGVGKTTLAQIVA 60

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPA 128
           ++L   F + S  V +   D+  ++   +          +LFIDEIHR S   ++ L  A
Sbjct: 61  KKLETPFYTLSA-VTSGVKDVREVIEKAKGGRFFGSHSPILFIDEIHRFSKSQQDSLLGA 119

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           +E   + L+    E PS   ++  LSR  L    +                        E
Sbjct: 120 VEKGIVTLIGATTENPSFEVIRPLLSRCQLYVLQS---------------------LSKE 158

Query: 187 DLKTIVQRGAK----LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT-I 241
           DL+ ++QR       L    +  + +  +   S G  R    +L  V + +    +   I
Sbjct: 159 DLEELIQRALHTDVVLQQRNIEVKESTALIRYSGGDARKLLNILELVVEASPANASPVLI 218

Query: 242 TREIADAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
             E     L +   A DK G    D+                   +SA +   R +  D 
Sbjct: 219 DDETVVKCLQQNPLAYDKDGEMHYDI-------------------VSAFIKSIRGSDPDA 259

Query: 300 IEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
              +M +       P+   R L+  A + +G+  P+
Sbjct: 260 ALYWMARMIEGGEDPQFIARRLVISAAEDIGLANPN 295


>gi|220932040|ref|YP_002508948.1| AAA ATPase central domain protein [Halothermothrix orenii H 168]
 gi|219993350|gb|ACL69953.1| AAA ATPase central domain protein [Halothermothrix orenii H 168]
          Length = 450

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 77/345 (22%), Positives = 128/345 (37%), Gaps = 54/345 (15%)

Query: 6   GLLSRNVSQED---ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
            L  +N    D        +RP  L+EF GQ +     K    A +A  + +  ++  GP
Sbjct: 5   NLFEQNSESNDKNRPLAYRMRPGNLDEFYGQEDVIGPGKPLRRAIEA--DRVQSLILYGP 62

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIH 115
           PG GKT+LAQV+AR+    F   +  V +    +  ++            + +LFIDEIH
Sbjct: 63  PGCGKTSLAQVIARKTEGKFIRINA-VTSGVSKIREVIDKASKNRSLHGIKTILFIDEIH 121

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++ L PA+E   + L+    E P        LSR  ++           PL+  
Sbjct: 122 RFNKSQQDALLPAVESGTITLIGATTENPYFEVNSPLLSRSRIVRL--------KPLKKE 173

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
             I I  N    E      +RG     + ++ +A   +A  + G  R A   L       
Sbjct: 174 DIIKILKNALNNE------ERGLGNYNIDISQDALQYLASIAGGDARTALNGLEIAVLTT 227

Query: 234 EVAHAKT--ITREIADAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGL 289
                    I + I   +L +     DK G +  D+                   +SA +
Sbjct: 228 PPDKEGIIHINKNIISESLQKKLLKYDKQGDNHYDV-------------------VSAFI 268

Query: 290 SEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
              R +  D    ++ +       PR   R ++  A + +G+  P
Sbjct: 269 KSMRGSDPDAALFWLARMLESGEDPRFIARRIIVHAAEDVGMADP 313


>gi|323219947|gb|EGA04420.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
          Length = 121

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 66/119 (55%), Positives = 83/119 (69%)

Query: 215 SRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARN 274
           +RGTPRIA RLLRRVRDFAEV H   I+ EIA  AL  L +D  GFD +D + L  +   
Sbjct: 1   ARGTPRIANRLLRRVRDFAEVKHDGAISAEIAAQALDMLNVDAEGFDYMDRKLLLAVIDK 60

Query: 275 FGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           F GGPVG++ ++A + E R+ IED++EPY+IQQGF+QRTPRGR+    AW H GI  P 
Sbjct: 61  FFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMATVRAWNHFGITPPE 119


>gi|304382033|ref|ZP_07364585.1| replication-associated recombination protein A [Prevotella marshii
           DSM 16973]
 gi|304336787|gb|EFM03011.1| replication-associated recombination protein A [Prevotella marshii
           DSM 16973]
          Length = 430

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 78/330 (23%), Positives = 124/330 (37%), Gaps = 53/330 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP TLE++ GQ        V     +A+   +   +  GPPG+GKTTLAQ++A 
Sbjct: 4   PLAERMRPSTLEDYIGQKHLVGEGGVLRRMIEAK--RVSSFILWGPPGVGKTTLAQIIAH 61

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAM 129
           ++ V F + S  V +   D+  ++   +          +LFIDEIHR S   ++ L  A+
Sbjct: 62  QMEVPFYTLSA-VTSGVKDVREVIERAKSGRFFSQGSPILFIDEIHRFSKSQQDSLLGAV 120

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E   + L+    E PS   ++  LSR  L    +        L +R              
Sbjct: 121 EQGVVTLIGATTENPSFEVIRPLLSRCQLYVLKSLEKEDLLALVER-------------A 167

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           + T V+       + +    A      S G  R    +L  V + +E A    I  E   
Sbjct: 168 ITTDVE--LSKRSIELRQTGAL--LRYSGGDARKLLNILELVAEASE-ADTLVIDDERVT 222

Query: 248 AALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
             L +   A DK G    D+                   ISA +   R +  D    +M 
Sbjct: 223 DCLQQNPLAYDKDGEMHYDI-------------------ISAFIKSIRGSDPDAALYWMA 263

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +       P    R L+  A + +G+  P+
Sbjct: 264 RMIEGGEDPVFIARRLVISAAEDIGLANPN 293


>gi|303234078|ref|ZP_07320727.1| recombination factor protein RarA [Finegoldia magna BVS033A4]
 gi|302495003|gb|EFL54760.1| recombination factor protein RarA [Finegoldia magna BVS033A4]
          Length = 431

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 72/345 (20%), Positives = 129/345 (37%), Gaps = 49/345 (14%)

Query: 2   MDREGL-LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD     L           + LRP++L+++ GQ       K+     KA  + +  ++F 
Sbjct: 1   MDLFEYNLQLQKENSSPLANRLRPKSLDKYFGQSHVVGEGKLLNRLIKA--DKIPSMIFY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDE 113
           GPPG GKTTLA++++ +    F   S  +     D+  +++  +        + VLFIDE
Sbjct: 59  GPPGTGKTTLAEIISNQTNSLFERLSA-ISNGVKDIREVISTAKTNLSMYNKKTVLFIDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++ L   +ED  + L+    E P     K  LSR  +I           PL 
Sbjct: 118 IHRFNKSQQDALLGYVEDGTITLIGATTENPFFEVNKALLSRCQIIEL--------KPLT 169

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
           D     I  N    +          K   + + ++A   +   + G  R A   L    +
Sbjct: 170 DNDIRNIIENALTEDKK-------LKEMNIQIDEKAIDVLVNSANGDARSALNALEIAIE 222

Query: 232 FA-EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
              +V     I  +    ++ +     + +D+ +  Y                 ISA + 
Sbjct: 223 STDQVNGCLIIDEDAIKNSVFKP---VLKYDKEEDHY---------------NVISAFIK 264

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
             R +  D    Y+ +       P+   R ++  A + +G+  P 
Sbjct: 265 SMRGSDIDAALYYLARMIESGEDPKFIARRMVIFASEDIGLANPE 309


>gi|148981576|ref|ZP_01816463.1| hypothetical protein VSWAT3_04716 [Vibrionales bacterium SWAT-3]
 gi|145960819|gb|EDK26153.1| hypothetical protein VSWAT3_04716 [Vibrionales bacterium SWAT-3]
          Length = 449

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 80/342 (23%), Positives = 118/342 (34%), Gaps = 42/342 (12%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M    L            + +RP T+E++ GQ       K    A +A    +  ++  G
Sbjct: 1   MSNYSLDFAGDEDFRPLAARMRPETVEQYIGQQHILGPGKPLRRALEAGH--IHSMILWG 58

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDL------AALLTNLEDRDVLFIDEIH 115
           PPG GKTTLA+V A          S  V +   D+      A        R +LF+DE+H
Sbjct: 59  PPGTGKTTLAEVAANYANAEVERVSA-VTSGVKDIRIAIEKARENKQAGRRTILFVDEVH 117

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P +ED  +  +    E PS       LSR        RV  LT+   D 
Sbjct: 118 RFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNALLSR-------ARVYKLTSLNTDD 170

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
               IR             QRG         D     +A    G  R++   L  + D A
Sbjct: 171 IATVIRQAI-------EDKQRGLGDVPAHFADNVLDRLAELVNGDARMSLNYLELLYDMA 223

Query: 234 EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
           E        + I    L  +A +K             +AR    G +  + ISA     R
Sbjct: 224 EDNDKGE--KAITLQLLAEVAGEK-------------VARFDNKGDIWYDLISAVHKSIR 268

Query: 294 DAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +  D    +  +       P    R L+ IA + +G   P 
Sbjct: 269 GSKPDAALYWSARMIAAGCDPLYIVRRLLAIASEDIGNADPR 310


>gi|258621724|ref|ZP_05716755.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|258585955|gb|EEW10673.1| conserved hypothetical protein [Vibrio mimicus VM573]
          Length = 449

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 67/343 (19%), Positives = 111/343 (32%), Gaps = 44/343 (12%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M    L            + +RP+T+E++ GQ       K    A +A    +  ++  G
Sbjct: 1   MSNYSLDFSGDEDFRPLAARMRPQTVEQYIGQQHILGPGKPLRRALEAGH--IHSMILWG 58

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIH 115
           PPG GKTTLA+V A          S  V +   ++ A +           R +LF+DE+H
Sbjct: 59  PPGTGKTTLAEVAANYANAEVERVSA-VTSGVKEIRAAIEKARENKLSGRRTILFVDEVH 117

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGL-LTNPLQD 172
           R +   ++   P +ED  +  +    E PS       LSR  +   T+     +   L  
Sbjct: 118 RFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNALLSRARVYKLTSLNQQEILQALHQ 177

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
                                 G         D     +A    G  R++   L  + D 
Sbjct: 178 AIADTEC---------------GLGKVAAVFADNVLDRLAELVNGDARMSLNYLELLYDM 222

Query: 233 AEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEP 292
           A          ++   A +                   ++R    G +  + ISA     
Sbjct: 223 AREDDQGRKQIDLPLLAEVAGEK---------------VSRFDNKGDIWYDLISAVHKSI 267

Query: 293 RDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           R +  D    +  +       P    R L+ IA + +G   P 
Sbjct: 268 RGSDPDAALYWAARMISAGCDPLYIARRLLAIASEDVGNADPR 310


>gi|153953934|ref|YP_001394699.1| recombination factor protein RarA [Clostridium kluyveri DSM 555]
 gi|219854548|ref|YP_002471670.1| hypothetical protein CKR_1205 [Clostridium kluyveri NBRC 12016]
 gi|146346815|gb|EDK33351.1| Predicted helicase subunit of Holliday junction resolvase
           [Clostridium kluyveri DSM 555]
 gi|219568272|dbj|BAH06256.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 437

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 76/348 (21%), Positives = 121/348 (34%), Gaps = 56/348 (16%)

Query: 2   MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD   + +    +E   +   +RP TLEEF GQ       K+   A     + +  V+F 
Sbjct: 1   MDLFDMANERNHKELKPLAERMRPETLEEFIGQEHILGKDKMLYRAIVT--DNISSVIFY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDE 113
           GPPG+GKTTLA+++A     NF   S  V +   D+  ++   E        + +LFIDE
Sbjct: 59  GPPGVGKTTLARIIANTTKANFYELSA-VNSGTADVKKIIKEAENNLKFYSKKTILFIDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLS-----RFTLIAATTRVGLL 166
           IHR +   ++ +  A+E   + L+    E P        LS     R   ++       L
Sbjct: 118 IHRFNKAQQDSVLNAVEKGIIILIGVTTENPYFEVNNALLSRSMIFRLEHLSENNVKKAL 177

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
            N ++   G                         + V  +     A+ S G  R A   L
Sbjct: 178 KNAIESPKGFSY--------------------LKIEVDPKVFDYFALHSGGDIRKALNAL 217

Query: 227 RRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETIS 286
                   V  +     +I           +      D            GG    +TIS
Sbjct: 218 DMA-----VRTSSKKEDKIFITTKDAKECIQRKITLYD-----------KGGTSHYDTIS 261

Query: 287 AGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           A +   R +  D    Y+ +       P    R ++  A + +G   P
Sbjct: 262 AFIKSLRGSSPDAAVYYLGKMLDAGEDPMFIARRIVIQASEDVGNADP 309


>gi|219669601|ref|YP_002460036.1| recombination factor protein RarA [Desulfitobacterium hafniense
           DCB-2]
 gi|219539861|gb|ACL21600.1| AAA ATPase central domain protein [Desulfitobacterium hafniense
           DCB-2]
          Length = 437

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 76/350 (21%), Positives = 130/350 (37%), Gaps = 61/350 (17%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD     S N  Q       +RPRTL+++ GQ E     K+   A +A  + +  ++  G
Sbjct: 1   MDLFS-ASFNPHQIAPLAERMRPRTLDDYIGQSEIIGKGKLLRRAIEA--DRVTSLILYG 57

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEI 114
           PPG GKT+LAQV+A      F   +  V A   ++  ++            + ++F DE+
Sbjct: 58  PPGTGKTSLAQVIANTTSSGFVRINA-VAAGVKEIREIIQTATEQLHLYGKKTLVFCDEV 116

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFT-----LIAATTRVGLLT 167
           HR +   ++ L PA+E+  +  +    E P        LSR T      + A      L 
Sbjct: 117 HRFNKGQQDALLPAVENGTITFIGATTENPFFELNSALLSRSTLFRLQPLTAEDIRSGLA 176

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             L D+                   +RG     +++  EA       + G  R A   L 
Sbjct: 177 QALADK-------------------ERGLGNYSVSIDPEAWEHWLNFANGDLRRALNALE 217

Query: 228 -RVRDFAEVAHAKTITREIADAALLR--LAIDKMGFDQLDLRYLTMIARNFGGGPVGIET 284
             V         + IT  +A+ ++ +  +  DK G +  D+                   
Sbjct: 218 LAVLTTPPEQGVRRITLSVAEESIQQRAMRFDKNGDNHYDI------------------- 258

Query: 285 ISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           +SA +   R +  D    ++         PR   R ++  A + +G+  P
Sbjct: 259 VSAFIKSMRGSDPDAALYWLAVLLESGEDPRFIVRRIIVHASEDVGLADP 308


>gi|315608969|ref|ZP_07883941.1| AAA family ATPase [Prevotella buccae ATCC 33574]
 gi|315249349|gb|EFU29366.1| AAA family ATPase [Prevotella buccae ATCC 33574]
          Length = 428

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 77/331 (23%), Positives = 126/331 (38%), Gaps = 52/331 (15%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +     +RPRTL+++ GQ    S   V     +     +   +  GPPG+GKTTLAQ++A
Sbjct: 2   EPLAERMRPRTLDDYVGQQHLVSPGAVLRRMIE--GGRISSFILWGPPGVGKTTLAQIIA 59

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPA 128
             L   F + S  V +   D+  ++              +LFIDEIHR S   ++ L  A
Sbjct: 60  NRLKTPFYTLSA-VTSGVKDVREVIERAGRNRFFDSLSPILFIDEIHRFSKSQQDSLLGA 118

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           +E   + L+    E PS   ++  LSR  L         +  PL+    + +       +
Sbjct: 119 VEKGVVTLIGATTENPSFEVIRPLLSRCQL--------YVLKPLEKEDLLRLLHRAVTED 170

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
               + +R  +LT           +   S G  R    +L  V +    A    IT  + 
Sbjct: 171 --TELRKRDIRLTQTDA-------LLRYSGGDARKLLNILELVVEACGDAPTVEITDRLV 221

Query: 247 DAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +  L +   A DK G    D+                   ISA +   R +  D    +M
Sbjct: 222 EERLQQNPLAYDKDGEMHYDI-------------------ISAFIKSIRGSDPDAALYWM 262

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +       P+   R L+  A + +G+  P+
Sbjct: 263 ARMIEGGEDPKFIARRLVISAAEDIGLANPN 293


>gi|160875433|ref|YP_001554749.1| recombination factor protein RarA [Shewanella baltica OS195]
 gi|160860955|gb|ABX49489.1| AAA ATPase central domain protein [Shewanella baltica OS195]
 gi|315267623|gb|ADT94476.1| AAA ATPase central domain protein [Shewanella baltica OS678]
          Length = 443

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 76/337 (22%), Positives = 118/337 (35%), Gaps = 48/337 (14%)

Query: 8   LSRNVSQE-DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           LS N + +     + +RPRT+ E+ GQ       +   +A +A       ++  GPPG G
Sbjct: 4   LSFNFAPDFRPLAARMRPRTIAEYIGQAHLLGEGQPLRKALEAGRA--HSMMLWGPPGTG 61

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSI 119
           KTTLA+++A     +    S  V +   D+ A +   +        R +LF+DE+HR + 
Sbjct: 62  KTTLAELIAHYSNAHVERISA-VTSGVKDIRAAIEQAKAVAESRGQRTLLFVDEVHRFNK 120

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             ++   P +ED  +  +    E PS       LSR        RV L+     D     
Sbjct: 121 SQQDAFLPFIEDGTVIFIGATTENPSFEINNALLSR-------ARVYLIKRLSHDEIAHI 173

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
           +     + E       RG       +  +    +A    G  R A  L+  + D      
Sbjct: 174 VTQALSDTE-------RGLGQRQFVMPTDVLTTLAQLCDGDARKALNLIELMGDMLADGG 226

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
             T    I  A       DK G    DL                   ISA     R +  
Sbjct: 227 TFTTEMLIQVAGHQVAGFDKNGDQFYDL-------------------ISAVHKSIRGSAP 267

Query: 298 DLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           D    +  +       P    R L+ IA + +G   P
Sbjct: 268 DAALYWFCRILEGGGDPLYVARRLLAIASEDVGNADP 304


>gi|78059884|ref|YP_366459.1| recombination factor protein RarA [Burkholderia sp. 383]
 gi|77964434|gb|ABB05815.1| Recombination protein MgsA [Burkholderia sp. 383]
          Length = 434

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 76/337 (22%), Positives = 126/337 (37%), Gaps = 52/337 (15%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L S    +  AD   LRP +L++  GQ            A +  +     ++F GPPG+G
Sbjct: 4   LFSAEPHRPLAD--ALRPTSLDDVIGQAHLLGAGMPLRRAFE--SGKPHSMIFWGPPGVG 59

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAAL-------LTNLEDRDVLFIDEIHRLSI 119
           KTTLA++ A+     F + S  V+    D+ A+             R ++F+DEIHR + 
Sbjct: 60  KTTLARLTAQAFDCEFAALSA-VLGGVKDIRAVTARAQQLFDEAGRRTIVFVDEIHRFNE 118

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             +  L P++    +  +    E PS    +  LSR  +         +  PL D     
Sbjct: 119 TQQGALLPSVTSGAVVFIGATTENPSFEVNRALLSRARV--------YVLKPLGDDALRA 170

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
           + +  +E             L  L+  D+A  ++  ++ G  R    LL +VR  +  A 
Sbjct: 171 LFVRAHET-----------ALGTLSFDDDALGKLIDQADGDARRFLNLLEQVRTASASAG 219

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
             TI     + A    A                  R   GG    + ISA     R +  
Sbjct: 220 VTTIDGRFVEHATTSGA-----------------RRFDKGGEHFYDQISALHKSVRGSNP 262

Query: 298 DLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           D    ++ +        R   R ++ IA+  +G+  P
Sbjct: 263 DAALYWLCRMLDGGTDRRYLARRIVAIAYDDIGLADP 299


>gi|261253433|ref|ZP_05946006.1| ATPase AAA family [Vibrio orientalis CIP 102891]
 gi|260936824|gb|EEX92813.1| ATPase AAA family [Vibrio orientalis CIP 102891]
          Length = 428

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 64/322 (19%), Positives = 110/322 (34%), Gaps = 42/322 (13%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP TL+++ GQ       K    A +A    +  ++  GPPG GKTTLA+V A      
Sbjct: 1   MRPETLDQYIGQQHILGVGKPLRRALEAGH--IHSMILWGPPGTGKTTLAEVAANYANAE 58

Query: 82  FRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
               S  V +   ++ A +           R +LF+DE+HR +   ++   P +ED  + 
Sbjct: 59  VERVSA-VTSGVKEIRAAIERARENKLAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVT 117

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
            +    E PS       LSR  +   T+                       ++      +
Sbjct: 118 FIGATTENPSFELNNALLSRARVYKLTSLAQQDIR--------------LALKQAIEDKE 163

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           RG      +  +     ++    G  R++   L  + D AE          +   A +  
Sbjct: 164 RGLGNVEASFAEGVLDRLSELVNGDARMSLNYLELLYDMAEEDEQGVKVITLPLLAEVAG 223

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
                            ++R    G +  + ISA     R +  D    +  +       
Sbjct: 224 EK---------------VSRFDNKGDIWYDLISAVHKSIRGSNPDAALYWSARMIAAGCD 268

Query: 314 PR--GRLLMPIAWQHLGIDIPH 333
           P    R L+ IA + +G   P 
Sbjct: 269 PLYIARRLLAIASEDVGNADPR 290


>gi|28198581|ref|NP_778895.1| recombination factor protein RarA [Xylella fastidiosa Temecula1]
 gi|182681262|ref|YP_001829422.1| recombination factor protein RarA [Xylella fastidiosa M23]
 gi|28056665|gb|AAO28544.1| ATPase [Xylella fastidiosa Temecula1]
 gi|182631372|gb|ACB92148.1| AAA ATPase central domain protein [Xylella fastidiosa M23]
 gi|307579712|gb|ADN63681.1| recombination factor protein RarA [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 453

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 77/327 (23%), Positives = 124/327 (37%), Gaps = 47/327 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RPRTL E  GQ       +    A    +  +  ++  GPPG GKTTL+ ++A 
Sbjct: 22  PLAERMRPRTLHEMVGQKRLLDPDRALHRAV--ASGHVHSMILWGPPGCGKTTLSLLLAH 79

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAME 130
            +   FRS S  V++   ++  +L +         R VLF+DE+HR + + ++   P +E
Sbjct: 80  YIDAEFRSVSA-VLSGLPEVRQILADAAQRFSEGRRTVLFVDEVHRFNKMQQDAFLPHIE 138

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
              +  +    E PS       LSR        RV +L         + ++    + E  
Sbjct: 139 RGSIIFVGATTENPSFELNSALLSRC-------RVHVLEAVSSQDIVVALQRALQDTE-- 189

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
                RG     + V+  +  EIA  + G  R A  LL      AE+A  + IT ++   
Sbjct: 190 -----RGLGGQKIEVSQASLLEIAKAADGDVRRALTLLEIA---AELAQDEQITADLLSQ 241

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L             D        R    G    + ISA     R +  D    ++++  
Sbjct: 242 VLA------------DRS-----RRFDKRGEQFYDQISALHKSVRSSNPDAALYWLLRML 284

Query: 309 FIQRTP--RGRLLMPIAWQHLGIDIPH 333
                P    R L  IA + +G+  P 
Sbjct: 285 DGGCDPIYLARRLTRIAIEDIGLADPR 311


>gi|126174375|ref|YP_001050524.1| recombination factor protein RarA [Shewanella baltica OS155]
 gi|125997580|gb|ABN61655.1| Recombination protein MgsA [Shewanella baltica OS155]
          Length = 443

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 76/337 (22%), Positives = 118/337 (35%), Gaps = 48/337 (14%)

Query: 8   LSRNVSQE-DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           LS N + +     + +RPRT+ E+ GQ       +   +A +A       ++  GPPG G
Sbjct: 4   LSFNFAPDFRPLAARMRPRTIAEYIGQAHLLGEGQPLRKALEAGRA--HSMMLWGPPGTG 61

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSI 119
           KTTLA+++A     +    S  V +   D+ A +   +        R +LF+DE+HR + 
Sbjct: 62  KTTLAELIAHYSNAHVERISA-VTSGVKDIRAAIEQAKAVAESRGQRTLLFVDEVHRFNK 120

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             ++   P +ED  +  +    E PS       LSR        RV L+     D     
Sbjct: 121 SQQDAFLPFIEDGTVIFIGATTENPSFEINNALLSR-------ARVYLIKRLSHDEIAHI 173

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
           +     + E       RG       +  +    +A    G  R A  L+  + D      
Sbjct: 174 VTQALSDTE-------RGLGQRQFVMPTDVLTTLAQLCDGDARKALNLIELMGDMLADGG 226

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
             T    I  A       DK G    DL                   ISA     R +  
Sbjct: 227 TFTTEMLIQVAGHQVAGFDKNGDQFYDL-------------------ISAVHKSIRGSAP 267

Query: 298 DLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           D    +  +       P    R L+ IA + +G   P
Sbjct: 268 DAALYWFCRILEGGGDPLYVARRLLAIASEDVGNADP 304


>gi|302380490|ref|ZP_07268955.1| recombination factor protein RarA [Finegoldia magna ACS-171-V-Col3]
 gi|302311433|gb|EFK93449.1| recombination factor protein RarA [Finegoldia magna ACS-171-V-Col3]
          Length = 431

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 72/345 (20%), Positives = 129/345 (37%), Gaps = 49/345 (14%)

Query: 2   MDREGL-LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD     L           + LRP++L+++ GQ       K+     KA  + +  ++F 
Sbjct: 1   MDLFEYNLQLQKENSSPLANRLRPKSLDKYFGQSHVVGEGKLLNRLIKA--DKIPSMIFY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDE 113
           GPPG GKTTLA++++ +    F   S  +     D+  +++  +        + VLFIDE
Sbjct: 59  GPPGTGKTTLAEIISNQTNSLFERLSA-ISNGVKDIREVISTAKTNLSMYNKKTVLFIDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++ L   +ED  + L+    E P     K  LSR  +I           PL 
Sbjct: 118 IHRFNKSQQDALLGYVEDGTITLIGATTENPFFEVNKALLSRCQIIEL--------KPLT 169

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
           D     I  N    +          K   + + ++A   +   + G  R A   L    +
Sbjct: 170 DNDIRNIIENALTEDKK-------LKEMNIQIDEKAIDVLVNSANGDARSALNALEIAIE 222

Query: 232 FA-EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
              +V     I  +    ++ +     + +D+ +  Y                 ISA + 
Sbjct: 223 STDQVNGCLIIDEDAIKNSVFKP---VLKYDKEEDHY---------------NVISAFIK 264

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
             R +  D    Y+ +       P+   R ++  A + +G+  P 
Sbjct: 265 SMRGSDIDAALYYLARMIESGEDPKFIARRMVIFASEDIGLANPE 309


>gi|315605005|ref|ZP_07880059.1| replication-associated recombination protein A [Actinomyces sp.
           oral taxon 180 str. F0310]
 gi|315313284|gb|EFU61347.1| replication-associated recombination protein A [Actinomyces sp.
           oral taxon 180 str. F0310]
          Length = 457

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 72/341 (21%), Positives = 126/341 (36%), Gaps = 50/341 (14%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           +  L   +          +RP +L+E  GQ       K      +A  +    ++F GPP
Sbjct: 6   QHSLFEDSGEDTRPLADRMRPTSLDEVVGQSHQIGPGKALRSMIEA--DRTPSMIFWGPP 63

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFIDEIHRL 117
           G+GKTTLA+V+AR    +F   S  V +   ++  ++        +  R ++F+DEIHR 
Sbjct: 64  GVGKTTLARVIARHTHASFIDFSA-VTSGIKEIREVMKQADAQASMGSRTIVFVDEIHRF 122

Query: 118 SIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
           +   ++   P +E   + L+    E PS       LSR  +         + N L +   
Sbjct: 123 NKAQQDAFLPFVEKGAIILIGATTENPSFEVNNALLSRCKV--------FVLNGLTEEDL 174

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR-VRDFAE 234
           + +               RG     + + D+    IA  + G  R+A   L   V +  E
Sbjct: 175 VGLMRRALTDP-------RGFGNQDVRIEDDLLRAIATFADGDARVALSTLEMAVLNGDE 227

Query: 235 VAHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEP 292
              A T+T E  +    R +   DK G +  ++                   ISA     
Sbjct: 228 DGGATTVTAETVEQCTSRKSLLYDKDGEEHYNI-------------------ISALHKSM 268

Query: 293 RDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
           R++  D    ++ +       P    R +   A + +G+  
Sbjct: 269 RNSDPDAAVYWLARMLEGGEDPLYVARRITRFASEDIGLAD 309


>gi|9106473|gb|AAF84262.1|AE003975_5 conserved hypothetical protein [Xylella fastidiosa 9a5c]
          Length = 429

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 71/322 (22%), Positives = 123/322 (38%), Gaps = 45/322 (13%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRTL E  GQ    +  +    A    +  +  ++  GPPG GKTTL+ ++A+ +   
Sbjct: 1   MRPRTLHEMVGQKRLLAPDRALHRAV--ASGHVHSMILWGPPGCGKTTLSLLLAQYIDAE 58

Query: 82  FRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F + S  V++   ++  +L           R VLF+DE+HR + + ++   P +E   + 
Sbjct: 59  FHAVSA-VLSGLPEVRQILAEAAQRFSEGRRTVLFVDEVHRFNNMQQDAFLPHIERGSII 117

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
            +    E PS       LSR        RV +L         + ++    + E       
Sbjct: 118 FVGATTENPSFELNSALLSRC-------RVHVLEAVSSQDIVVALQRALQDTE------- 163

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           RG     + V++ +  EIA  + G  R A  LL    + A+      +T ++    L   
Sbjct: 164 RGLGEQKIEVSEASLLEIAKAADGDVRRALTLLEIAAELAQ-DEDGQMTADLLSQVLA-- 220

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
                     D        R    G    + ISA     R +  D    ++++       
Sbjct: 221 ----------DRS-----RRFDKRGEQFYDQISALHKSVRSSNPDAALYWLLRMLDGGCD 265

Query: 314 P--RGRLLMPIAWQHLGIDIPH 333
           P    R L  +A + +G+  P 
Sbjct: 266 PIYLARRLTRMAIEDIGLADPR 287


>gi|83854945|ref|ZP_00948475.1| ATPase, AAA family protein [Sulfitobacter sp. NAS-14.1]
 gi|83842788|gb|EAP81955.1| ATPase, AAA family protein [Sulfitobacter sp. NAS-14.1]
          Length = 435

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 82/345 (23%), Positives = 130/345 (37%), Gaps = 55/345 (15%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M D  G  +  V      ++  LRPR+L E  GQ +              ++ +L  ++F
Sbjct: 1   MADLFGSDAPAVESGHRPLADRLRPRSLGEVIGQSQVLGPDAPL--TVMLQSGSLGSLIF 58

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEI 114
            GPPG+GKTT+A+++A E  ++F   S      P + K  D A +        +LF+DEI
Sbjct: 59  WGPPGVGKTTIARLLADETDLHFVQISAIFSGVPELRKVFDAAKIRRQNGQGTLLFVDEI 118

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++   P MED  + L+    E PS       LSR  ++           PL D
Sbjct: 119 HRFNKAQQDGFLPHMEDGTILLVGATTENPSFELNAAVLSRSQVLVLERL------PLSD 172

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLT--GLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
                          L+ + QR  K    GL +   A   +   + G  R    L+ +V 
Sbjct: 173 ---------------LERLAQRAEKELGRGLPLDGPARENLLEMADGDGRALLNLIEQV- 216

Query: 231 DFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
             A       +  +   A L+R A                 A+   GG      ISA   
Sbjct: 217 --AAWKVEGKLDGKALSARLMRRA-----------------AQYDKGGDAHYNLISALHK 257

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
             R +  D    ++ +       PR   R +  +A + +G+  P 
Sbjct: 258 SVRGSDPDAALYWLARMLEGGEDPRYLMRRITRMAVEDIGLADPQ 302


>gi|260577150|ref|ZP_05845127.1| AAA ATPase central domain protein [Rhodobacter sp. SW2]
 gi|259020624|gb|EEW23943.1| AAA ATPase central domain protein [Rhodobacter sp. SW2]
          Length = 436

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 81/338 (23%), Positives = 127/338 (37%), Gaps = 58/338 (17%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           +            LRP+TL E  GQ +  S        A   A +L  ++F GPPG+GKT
Sbjct: 10  TPQPVAPRPLADRLRPKTLAEVIGQGKVLSPEGPL--GAMLAAHSLSSLIFWGPPGVGKT 67

Query: 69  TLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           T+A+++A E  + F   S        + K  + A +        +LF+DEIHR +   ++
Sbjct: 68  TIARLLAHESDMAFVQISAIFTGVQDLRKVFEQARIRRANGQGTLLFVDEIHRFNKAQQD 127

Query: 124 ILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
              P MED  + L+    E PS       +SR  +I                        
Sbjct: 128 GFLPYMEDGTILLVGATTENPSFELNAALMSRAQVIVL---------------------E 166

Query: 182 FYEIEDLKTIVQRGAKLTG--LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
              ++DL+ + QR  +  G  L +  EA   +   + G  R A  L+ +V   A     K
Sbjct: 167 RLSLDDLERLAQRAEQDMGRALPLKAEAREALLEMADGDGRAALNLIEQV---AAWKLDK 223

Query: 240 TITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
            + RE     L+R A   DK G +  +L                   ISA     R +  
Sbjct: 224 PLDRETLSKRLMRRAAKYDKSGEEHYNL-------------------ISALHKSVRGSDP 264

Query: 298 DLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           D    +  +       PR   R +  +A + +G+  P 
Sbjct: 265 DAALYWFARMLEGGEDPRFLARRITRMAVEDIGLADPQ 302


>gi|299140803|ref|ZP_07033941.1| ATPase, AAA family [Prevotella oris C735]
 gi|298577769|gb|EFI49637.1| ATPase, AAA family [Prevotella oris C735]
          Length = 423

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 75/329 (22%), Positives = 125/329 (37%), Gaps = 50/329 (15%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +     +RP +L+E+ GQ        V  +   A    +   +  GPPG+GKTTLAQ++A
Sbjct: 3   EPLAERMRPHSLDEYVGQQHLVGRGAVLRKMIDA--GRISSFILWGPPGVGKTTLAQIIA 60

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPA 128
            +L   F + S  V +   D+  ++   ++         +LFIDEIHR S   ++ L  A
Sbjct: 61  NKLETPFYTLSA-VTSGVKDVRDVIEKAKNNRFFNTASPILFIDEIHRFSKSQQDSLLGA 119

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           +E   + L+    E PS   ++  LSR  L    +        L +R             
Sbjct: 120 VERGVVTLIGATTENPSFEVIRPLLSRCQLYVLKSLNKEDLLQLVNR------------- 166

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
            + T V+   K   + + +  A      S G  R    +L  V + +E     T     +
Sbjct: 167 AITTDVE--LKKKRIELKESGAL--LRYSGGDARKLLNILELVVEASESEVVITDKLVES 222

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
                 LA DK G    D+                   ISA +   R +  D    ++ +
Sbjct: 223 RLQTNPLAYDKDGEMHYDI-------------------ISAFIKSIRGSDPDAALYWLAR 263

Query: 307 QGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                  P+   R L+  A + +G+  P+
Sbjct: 264 MIEGGEDPQFIARRLVISAAEDVGLANPN 292


>gi|116334669|ref|YP_796196.1| recombination factor protein RarA [Lactobacillus brevis ATCC 367]
 gi|116100016|gb|ABJ65165.1| Recombination protein MgsA [Lactobacillus brevis ATCC 367]
          Length = 439

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 71/342 (20%), Positives = 125/342 (36%), Gaps = 50/342 (14%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M +  L   N  +     S +RP+TL++F GQ       K+  E  +   + +  ++F G
Sbjct: 1   MKQGSLF-ENSQRNTPLASRVRPQTLDQFVGQAHLLGPGKILRELIE--NDQVSSMIFWG 57

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSG--PVIAKAGDL---AALLTNLEDRDVLFIDEIHR 116
           PPG+GKTTLA+++AR+    F S S     I+K   +   A     + ++ ++F+DEIHR
Sbjct: 58  PPGVGKTTLAEIIARQTQATFLSFSAVDSSISKIKKIMHQAEADREIGEQTIVFVDEIHR 117

Query: 117 LSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRF 174
            +   ++   P +E   + L+    E PS       LSR  +           + L  R 
Sbjct: 118 FNKAQQDAFLPYVERGSIILIGATTENPSFEVNSALLSRCKVFVLKALATADIDQLL-RN 176

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
            +     F                  + + D     IA  + G  R+A   L       +
Sbjct: 177 ALTNPAGF---------------SGRVTIGDAELRAIAEFANGDARMALNTLEMAVLNGD 221

Query: 235 VAHAKTITREIADAAL---LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
               +    +     L     +  DK G +  ++                   ISA    
Sbjct: 222 KQGDQVTVTQADLKQLITQKFVLYDKTGEEHYNI-------------------ISALHKS 262

Query: 292 PRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
            R++  D    ++ +       P    R L+  A + +G+  
Sbjct: 263 MRNSDPDAAIYWLTRMLSGGEDPLYVARRLVRFASEDIGLAD 304


>gi|83590492|ref|YP_430501.1| recombination factor protein RarA [Moorella thermoacetica ATCC
           39073]
 gi|83573406|gb|ABC19958.1| Recombination protein MgsA [Moorella thermoacetica ATCC 39073]
          Length = 441

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 76/348 (21%), Positives = 134/348 (38%), Gaps = 52/348 (14%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD      +   Q  A ++  +RPRTL+EF GQ +      +   A +  +++L  ++  
Sbjct: 1   MDLFEQAGQEARQAGAPLAVRMRPRTLDEFVGQEKIIGPGTLLRRAIE--SDSLTSIILW 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDE 113
           GPPG GKTTLA+++A     +F + +  V+    D+  ++    +R        V+F+DE
Sbjct: 59  GPPGSGKTTLARIIATMTRAHFEALNA-VLDGINDIRRVIAAAREREKYYQQKTVIFVDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +  +++ L P +E+  L L+    E P         SR  +             L 
Sbjct: 118 IHRWAKNIQDALLPCVEEGLLILIGATIENPMFTVNAAIRSRSRIFRLEALSDAAILTLL 177

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR- 230
            R                   +RG     +    EA   +A  + G  R+A   L     
Sbjct: 178 RR--------------ALADAERGLGKFNVQADPEALEHLARVANGDARVALNALEFAVL 223

Query: 231 -DFAEVAHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISA 287
               + +  + +T E+A+ A+ + A   D+ G    D                    +SA
Sbjct: 224 TTAPDTSGRRHLTLEVAEEAIQQRAVLYDRDGDQHYDC-------------------VSA 264

Query: 288 GLSEPRDAIEDLIEPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
            +   R +  D    ++ +  +    P    R LM  A + +G+  P 
Sbjct: 265 WIKSMRGSDPDAALYWLARMIYAGEDPAFLARRLMIHAAEDVGLADPQ 312


>gi|89895174|ref|YP_518661.1| recombination factor protein RarA [Desulfitobacterium hafniense
           Y51]
 gi|89334622|dbj|BAE84217.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 440

 Score =  156 bits (395), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 76/350 (21%), Positives = 130/350 (37%), Gaps = 61/350 (17%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD     S N  Q       +RPRTL+++ GQ E     K+   A +A  + +  ++  G
Sbjct: 4   MDLFS-ASFNPHQIAPLAERMRPRTLDDYIGQSEIIGKGKLLRRAIEA--DRVTSLILYG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEI 114
           PPG GKT+LAQV+A      F   +  V A   ++  ++            + ++F DE+
Sbjct: 61  PPGTGKTSLAQVIANTTSSGFVRINA-VAAGVKEIREIIQTATEQLHLYGKKTLVFCDEV 119

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFT-----LIAATTRVGLLT 167
           HR +   ++ L PA+E+  +  +    E P        LSR T      + A      L 
Sbjct: 120 HRFNKGQQDALLPAVENGTITFIGATTENPFFELNSALLSRSTLFRLQPLTAEDIRSGLA 179

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             L D+                   +RG     +++  EA       + G  R A   L 
Sbjct: 180 QALADK-------------------ERGLGNYSVSIDPEAWEHWLNFANGDLRRALNALE 220

Query: 228 -RVRDFAEVAHAKTITREIADAALLR--LAIDKMGFDQLDLRYLTMIARNFGGGPVGIET 284
             V         + IT  +A+ ++ +  +  DK G +  D+                   
Sbjct: 221 LAVLTTPPEQGVRRITLSVAEESIQQRAMRFDKNGDNHYDI------------------- 261

Query: 285 ISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           +SA +   R +  D    ++         PR   R ++  A + +G+  P
Sbjct: 262 VSAFIKSMRGSDPDAALYWLAVLLESGEDPRFIVRRIIVHASEDVGLADP 311


>gi|225419780|ref|ZP_03762083.1| hypothetical protein CLOSTASPAR_06118 [Clostridium asparagiforme
           DSM 15981]
 gi|225041584|gb|EEG51830.1| hypothetical protein CLOSTASPAR_06118 [Clostridium asparagiforme
           DSM 15981]
          Length = 449

 Score =  156 bits (395), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 82/348 (23%), Positives = 134/348 (38%), Gaps = 61/348 (17%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M++  L   + +      S LRP TL+EF GQ +     K+  +      + +  ++F G
Sbjct: 10  MEQLSLFD-DRTTTAPLASRLRPETLDEFVGQNQLLGEGKILRQIIDQ--DNIPSMIFWG 66

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIH 115
           PPG+GKTTLA ++A+     F + S  V +   ++  ++   E       R V+F+DEIH
Sbjct: 67  PPGVGKTTLASIIAKRTHAEFINFSA-VTSGIKEIKEVMARAEQGRRMGKRTVVFVDEIH 125

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTL-----IAATTRVGLLTN 168
           R +   ++   P +E   + L+    E PS       LSR  +     +       LL N
Sbjct: 126 RFNKAQQDAFLPYVEKGSIILIGATTENPSFEINAALLSRCRVFVLQGLGEEDLTRLLKN 185

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            LQ                      RG     + ++D     IA  S G  R A  +L  
Sbjct: 186 ALQSP--------------------RGFGYLNVDISDAMLGAIARFSGGDARTALNILEM 225

Query: 229 VRDFAEVAHAKTI-TREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETI 285
                E++  KT  T EI +  + R +   DK G +  +L                   I
Sbjct: 226 AVSNGEISAEKTTVTPEILEQCMSRKSLLYDKNGEEHYNL-------------------I 266

Query: 286 SAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
           SA     R++  D    ++ +       P    R L+  A + +G+  
Sbjct: 267 SALHKSMRNSDPDAAVYWLSRMLEAGEDPLYIARRLIRFASEDVGLAD 314


>gi|241763321|ref|ZP_04761377.1| AAA ATPase central domain protein [Acidovorax delafieldii 2AN]
 gi|241367473|gb|EER61772.1| AAA ATPase central domain protein [Acidovorax delafieldii 2AN]
          Length = 449

 Score =  156 bits (395), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 83/337 (24%), Positives = 127/337 (37%), Gaps = 45/337 (13%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           LLS            +RPR+L+E  GQ    +       A +A    +  ++  GPPG G
Sbjct: 11  LLSAASDHLRPLAERMRPRSLDEMVGQRRLLAPRSALRRAVEA--GRVHSMVLWGPPGCG 68

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSII 120
           KTTLA ++AR     FRS S  V+A   ++  +L           R VLF+DE+HR +  
Sbjct: 69  KTTLALLLARYADAEFRSVSA-VLAGLPEVRQVLAEAAHRFAQGRRTVLFVDEVHRFNKG 127

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++   P +E   +  +    E PS       LSR        RV ++     +     +
Sbjct: 128 QQDAFLPHIERGSIVFVGATTENPSFELNSALLSRC-------RVHVMEAVSVEDIVQAL 180

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           RL   + E       RG    G+ V+ E+  EIA  + G  R A  LL    + A     
Sbjct: 181 RLALDDPE-------RGLGNDGVQVSGESLREIARAADGDVRRALTLLEIAAELASDEDG 233

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
           +          L ++  D+               R   GG    + ISA     R +  D
Sbjct: 234 RI-----TPQTLAQVLADRT-------------RRFDKGGEQFYDQISALHKSVRSSNPD 275

Query: 299 LIEPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
               ++ +       P   GR L  +A   +G+  P 
Sbjct: 276 AALYWLARMLDGGCDPAYLGRRLTCMALDDIGLADPR 312


>gi|260913897|ref|ZP_05920371.1| replication-associated recombination protein A [Pasteurella
           dagmatis ATCC 43325]
 gi|260631984|gb|EEX50161.1| replication-associated recombination protein A [Pasteurella
           dagmatis ATCC 43325]
          Length = 446

 Score =  156 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 70/332 (21%), Positives = 115/332 (34%), Gaps = 53/332 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP TL ++ GQ       K   +A +     +  ++F GPPG GKTTLA+++A+
Sbjct: 15  PLAARMRPTTLAQYYGQSHLIGEGKPLRKAIEVGH--IHSMIFWGPPGTGKTTLAEIIAQ 72

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130
            +       S  V +   ++   +   +       R +LF+DE+HR +   ++   P +E
Sbjct: 73  RINAEVERISA-VTSGVKEIREAIERAKQNRLSDRRTILFVDEVHRFNKSQQDAFLPHIE 131

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTL-----IAATTRVGLLTNPLQDRFGIPIRLNFY 183
           D  +  +    E PS       LSR  +     +  T    +L   LQD           
Sbjct: 132 DGTIIFIGATTENPSFELNSALLSRARVYVLKSLTITEITQVLRQALQDE---------- 181

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
                    +RG       + +     +A    G  R+A   L  + D AE      I  
Sbjct: 182 ---------ERGLGKERFFLEENLLEMLAEYVNGDARLALNCLELMSDMAEEHENGKILN 232

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
                 +L                    AR    G    + ISA     R +  D    +
Sbjct: 233 RTLLKEVLGERQ----------------ARFDKQGDRFYDLISALHKSVRGSAPDAALYW 276

Query: 304 MIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
             +       P    R L+ IA + +G   P 
Sbjct: 277 YARIITAGGDPLYVARRLLAIASEDVGNADPR 308


>gi|114566015|ref|YP_753169.1| recombination factor protein RarA [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|114336950|gb|ABI67798.1| Recombination protein MgsA [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 440

 Score =  156 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 71/344 (20%), Positives = 131/344 (38%), Gaps = 47/344 (13%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD   L         A ++  +RPR+L+E  GQ           +A +   + L   +  
Sbjct: 1   MDLFSLADEKKFDAHAPLAWRMRPRSLDEVVGQEHIIGPDSPLHQAIE--NDRLQSFVLY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAAL-------LTNLEDRDVLFIDE 113
           GPPG GKTT+A ++AR    ++ +    V +  G++  +       L   +   ++F+DE
Sbjct: 59  GPPGSGKTTIAHIIARTTSSHYAAIKA-VSSGVGEIRKIAADAADHLKYYQQSSIIFVDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   +++L P +ED  L L+    E P        LSR  L             + 
Sbjct: 118 IHRFNKSQQDVLLPYVEDGTLILIGATTENPLYEINNALLSRMKLYIMEALNANSLRRI- 176

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
                        +E      +RG     +++ +++   I   ++G  R A  +L  + +
Sbjct: 177 -------------VEQALADPERGLGKHNISIDEQSMVMIVQAAQGDARTALNILDTLHN 223

Query: 232 -FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
            ++    +  IT E+ +    R                 +I +    G    +TISA + 
Sbjct: 224 SYSSKDGSLRITPELLEKVTGR-----------------LILKYDRSGDYHYDTISAFIK 266

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
             R +  D    ++         P+   R L+  A + +G+  P
Sbjct: 267 SIRGSDPDAALFWLAVMLEGGEDPKFIARRLIVHAAEDIGLADP 310


>gi|198282689|ref|YP_002219010.1| AAA ATPase central domain-containing protein [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218667409|ref|YP_002424881.1| ATPase, AAA family [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198247210|gb|ACH82803.1| AAA ATPase central domain protein [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218519622|gb|ACK80208.1| ATPase, AAA family [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 442

 Score =  156 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 78/336 (23%), Positives = 127/336 (37%), Gaps = 43/336 (12%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           ++ + +      + +RP+TL+ + GQ             A  +A  L  ++  GPPG GK
Sbjct: 1   MAASSTDPRPLAARMRPQTLDAYAGQRHLLGKEGPL--QAMVQAGHLHSMILWGPPGSGK 58

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFIDEIHRLSIIV 121
           TTLAQ++A   G +F+  S  V +   ++ A +++      L    VLFIDEIHR +   
Sbjct: 59  TTLAQLLAHTAGRHFQILSA-VNSGVREIRAAVSSAEAAQSLGQGTVLFIDEIHRFNKSQ 117

Query: 122 EEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           ++ L P +E+  + L+    E PS   V   LSR        RV +L    ++  G  + 
Sbjct: 118 QDALLPYVEEGVVTLIGATTENPSFALVNALLSR-------ARVYVLKALTEEELGAVL- 169

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
                 +        G     + ++ E    +   + G  R    LL      A     K
Sbjct: 170 ------DHTLADRVLGLGALAIEMSPEVRKGLLTAADGDARRLLNLLDLAVQLAPAREGK 223

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           T       AA          FDQ              GG    + ISA     R +  D 
Sbjct: 224 TQITAGIVAA--ASGHSWRRFDQ--------------GGEAFYDEISAFHKSLRGSDPDA 267

Query: 300 IEPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
              ++ +       P    R L+ +A + +G+  P 
Sbjct: 268 ALYWLARMLDGGADPLYLARRLVRMASEDVGLADPR 303


>gi|109898773|ref|YP_662028.1| recombination factor protein RarA [Pseudoalteromonas atlantica T6c]
 gi|109701054|gb|ABG40974.1| Recombination protein MgsA [Pseudoalteromonas atlantica T6c]
          Length = 445

 Score =  156 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 67/328 (20%), Positives = 112/328 (34%), Gaps = 48/328 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP+ + E+ GQ       K    A +        ++  GPPG GKTTLA+++A 
Sbjct: 17  PLAARMRPQNIAEYFGQQHIVGVGKPLRSAIERGH--CHSMILWGPPGTGKTTLAEIIAM 74

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAM 129
               +    S  V +   D+ + +   +        R +LF+DE+HR +   ++   P +
Sbjct: 75  HCDAHIERISA-VTSGVKDIRSAIEQAKQNALNQAKRTILFVDEVHRFNKSQQDAFLPFI 133

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ED  +  +    E PS       LSR  +    +        L +     I       E 
Sbjct: 134 EDGTITFIGATTENPSFELNGALLSRARVYVLKS--------LTENDLTDIAKRALTDEP 185

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
                 RG     L + D+    +   + G  R     +    DF+       IT E   
Sbjct: 186 ------RGLGQLALQIEDKGIALLTELAGGDARRLLNYIELAADFST---EGKITLEAIK 236

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
            A+                    +A+   GG    + ISA     R +  D    +  + 
Sbjct: 237 EAVGEK-----------------VAQYDKGGDQFYDLISAFHKSVRGSSPDGALYWYARM 279

Query: 308 GFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                 P    R L+ IA + +G   P 
Sbjct: 280 LNAGCDPLYVARRLLAIATEDIGNADPR 307


>gi|294673569|ref|YP_003574185.1| AAA family ATPase [Prevotella ruminicola 23]
 gi|294473348|gb|ADE82737.1| ATPase, AAA family [Prevotella ruminicola 23]
          Length = 424

 Score =  156 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 79/330 (23%), Positives = 123/330 (37%), Gaps = 53/330 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRPRTL+E+ GQ        V  +   A    +   +  GPPG+GKTTLAQ++A 
Sbjct: 4   PLAERLRPRTLDEYIGQEHLVGEGAVLRKMIDA--GRIPSFILWGPPGVGKTTLAQIIAH 61

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAM 129
           +L   F + S  V +   D+  ++   +          +LFIDEIHR S   ++ L  A+
Sbjct: 62  KLETPFYTLSA-VTSGVKDVREVIERAQKGRFFNEASPILFIDEIHRFSKSQQDSLLGAV 120

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E   + L+    E PS   ++  LSR  L    +        L +R              
Sbjct: 121 EKGIVTLIGATTENPSFEVIRPLLSRCQLYVLKSLQKDDLQKLLER-------------- 166

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
               +   A L    +  +    +   S G  R    +L  V + AE      IT E   
Sbjct: 167 ---AIHTDAILKERNIVLQETSAMLRYSGGDARKLLNILELVVE-AEAGDEVVITDEKVV 222

Query: 248 AALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
             L +   A DK G    D+                   ISA +   R +  D    ++ 
Sbjct: 223 NRLQQNPLAYDKDGEMHYDI-------------------ISAFIKSIRGSDPDAALYWLA 263

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +       P+   R L+  A + +G+  P+
Sbjct: 264 RMIEGGEDPQFIARRLVISASEDIGLANPN 293


>gi|260220658|emb|CBA28419.1| Replication-associated recombination protein A [Curvibacter
           putative symbiont of Hydra magnipapillata]
          Length = 431

 Score =  156 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 70/339 (20%), Positives = 119/339 (35%), Gaps = 54/339 (15%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           ++   S+      LLRP+TL E  GQ            A ++        +  GPPG+GK
Sbjct: 1   MATPPSKHQPLAELLRPKTLGEVIGQQHLLGEGMALRLAFESGQ--PHSCILWGPPGVGK 58

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------EDRDVLFIDEIHRLSI 119
           TT+A+++A      F + S  V+    ++   +           + R ++F+DE+HR + 
Sbjct: 59  TTIARLMADAFDAQFITISA-VLGGIKEIREAVDQALNARDGLEQRRTIIFVDEVHRFNK 117

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             ++   P +E      +    E PS       LSR                        
Sbjct: 118 SQQDAFLPHVESGLFTFIGATTENPSFEVNSALLSR---------------------AAV 156

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAA-CEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
             L   + + LK IV +      L   +  A   +   + G  R     L  +   A   
Sbjct: 157 YVLQPLDADSLKKIVLKAQTEYALPAIESIAIDRLIAYADGDARRLLNTLETLAIAARQE 216

Query: 237 HAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAI 296
            A     EI DA LL++  ++             + R   GG    +TISA     R + 
Sbjct: 217 QAP----EITDAWLLKVLGER-------------MRRYDKGGEQFYDTISALHKSVRGSD 259

Query: 297 EDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +    +  +       PR   R  + +A + +G+  P 
Sbjct: 260 PNASLYWFTRMLDGGADPRYMARRFIRMAAEDIGLADPR 298


>gi|242239684|ref|YP_002987865.1| recombination factor protein RarA [Dickeya dadantii Ech703]
 gi|242131741|gb|ACS86043.1| AAA ATPase central domain protein [Dickeya dadantii Ech703]
          Length = 447

 Score =  156 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 74/331 (22%), Positives = 115/331 (34%), Gaps = 50/331 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP TL ++ GQ       K    A +A    L  ++  GPPG GKTTLA+++ R
Sbjct: 15  PLAARMRPTTLAQYIGQQHLLGPGKPLPRAIEAGQ--LHSMILWGPPGTGKTTLAELIGR 72

Query: 77  ELGVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
               +    S        I +A + A    N   R +LF+DE+HR +   ++   P +ED
Sbjct: 73  YGEADVERISAVTSGIKDIREAVERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED 132

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATT-----RVGLLTNPLQDRFGIPIRLNFYE 184
             +  +    E PS       LSR  +    +        +L   + DR           
Sbjct: 133 GTVTFIGATTENPSFELNSALLSRARVYLLKSLDTADIEQVLAQAMVDR----------- 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
                   +RG     + + DE    +A    G  R A  LL  + D AEV         
Sbjct: 182 --------ERGLGGQHIVLPDETRRLLAELVNGDARRALNLLEMMADMAEVDADGQRVLT 233

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
            A    +         ++ D  Y               + ISA     R +  D    + 
Sbjct: 234 PALLKAVSGERSARFDNKGDRYY---------------DLISAVHKSVRGSAPDAALYWY 278

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +       P    R L+ IA + +G   P 
Sbjct: 279 ARIITAGGDPLYVARRLLAIASEDVGNADPR 309


>gi|284048963|ref|YP_003399302.1| AAA ATPase central domain protein [Acidaminococcus fermentans DSM
           20731]
 gi|283953184|gb|ADB47987.1| AAA ATPase central domain protein [Acidaminococcus fermentans DSM
           20731]
          Length = 439

 Score =  156 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 75/348 (21%), Positives = 129/348 (37%), Gaps = 62/348 (17%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M+ + L +     ++   + LRPRTL+EF GQ +     K+     +   + +  ++F G
Sbjct: 1   MEEDSLFAA--PADEPLAARLRPRTLDEFVGQEQLLGPGKILWNLIEE--DRISSMIFWG 56

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIH 115
           PPG+GKTTLAQ++A     NF + S  V +   ++  ++   ++      R ++F+DEIH
Sbjct: 57  PPGVGKTTLAQIIAHTTRANFINFSA-VTSGIKEIRTVMQRADENRRFGARTIVFVDEIH 115

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTL-----IAATTRVGLLTN 168
           R +   ++   P +E   + L+    E PS       LSR  +     +      G+L  
Sbjct: 116 RFNRAQQDAFLPFVEKGAIILIGATTENPSFEVNGALLSRCKVFVLKALDEKAIKGILKR 175

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            L D                     RG     + + +E    +A  S G  R A   L  
Sbjct: 176 ALTDP--------------------RGFGKETVHLAEEDLTFLARLSNGDARSALATLEM 215

Query: 229 VRDFAEVAHAK---TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETI 285
           V    E        +            L  DK G +  +L                   I
Sbjct: 216 VVLNGERKPDGIHVSRELIEQCTGKKALLYDKTGEEHYNL-------------------I 256

Query: 286 SAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
           SA     R++  D    ++ +       P    R ++  A + +G+  
Sbjct: 257 SALHKSMRNSDPDAAVYWLARMLEAGEDPLYIARRVVRFASEDVGLAD 304


>gi|145631003|ref|ZP_01786779.1| predicted ATPase [Haemophilus influenzae R3021]
 gi|144983470|gb|EDJ90946.1| predicted ATPase [Haemophilus influenzae R3021]
          Length = 453

 Score =  156 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 71/331 (21%), Positives = 119/331 (35%), Gaps = 51/331 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP +LE++ GQ       K   +A +A    +  ++  GPPG GKTTLA+++A+
Sbjct: 15  PLAAKMRPTSLEQYFGQSHLIGEGKPLRKAIQAGH--IHSMILWGPPGTGKTTLAEIIAQ 72

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            +       S        I +A D A      + + +LF+DE+HR +   ++   P +ED
Sbjct: 73  RINAEVERISAVTSGIKEIREAIDRAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIED 132

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             +  +    E PS       LSR        RV +L +         ++    + E   
Sbjct: 133 GTVIFIGATTENPSFELNNALLSR-------ARVYVLKSLTTAEIEQVLQQAVEDPE--- 182

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
               RG     L + +     +A    G  R+A   L  + D A+               
Sbjct: 183 ----RGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMADETENGK--------- 229

Query: 250 LLRLAIDKMGFDQLDLRYLTMI-----ARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
                       ++D   L  +     AR    G    + ISA     R +  D    + 
Sbjct: 230 ------------KIDRTLLKEVLGERQARFDKQGDRFYDLISALHKSVRGSAPDAALYWY 277

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +       P    R L+ IA + +G   P 
Sbjct: 278 ARILTAGGDPLYVARRLLAIASEDVGNADPR 308


>gi|291245127|ref|XP_002742444.1| PREDICTED: Werner helicase interacting protein-like [Saccoglossus
           kowalevskii]
          Length = 633

 Score =  156 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 69/340 (20%), Positives = 129/340 (37%), Gaps = 35/340 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
                +RP +L+++ GQ +       L+  IEA       +  ++  GPPG GKTTLA++
Sbjct: 204 PLAEKMRPSSLDDYVGQDKVIGTNTMLRSLIEA-----NDVPSMILWGPPGCGKTTLARI 258

Query: 74  VARELGVNFRSTS-----GPVIAKAGDLAALL-------TNLEDRDVLFIDEIHRLSIIV 121
           VA     N  S           +   ++  ++       T  + + +LFIDEIHR + + 
Sbjct: 259 VASNAKKNSNSRLRFVQLSATTSNVSEVREVIKIAQNEQTMFKRKTILFIDEIHRFNKLQ 318

Query: 122 EEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTR-VGLLTNPLQDRFGIPI 178
           ++     +E+  + L+    + PS +     LSR  ++      +  + N L        
Sbjct: 319 QDTFLMHIENGTITLIGATTQNPSFQVNSALLSRCKVVVLEKLSIQSMENILTKAIKSLH 378

Query: 179 RLNFYEIEDLKTIVQR--GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR-RVRDFAEV 235
                E E+  T +++   A+   L V   A   +     G  R A   L   V      
Sbjct: 379 GCILEEKEEPATAIEKYHHAERPELFVERNALSMLCNLCDGDGRAALNCLEIAVHSQVAS 438

Query: 236 AHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDA 295
             +  + +  +D  +++L   K G  +  + Y      ++         ISA     R +
Sbjct: 439 HRSGGLDKMNSDYVVVKLDHIKEGLQRSHILYDKTGEEHYNC-------ISAMQKSIRGS 491

Query: 296 IEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
             +    ++ +       P    R L+  A + +G+  PH
Sbjct: 492 DANASLYWVTRMLLGGEDPLYIARRLVRTASEDIGLADPH 531


>gi|332297274|ref|YP_004439196.1| AAA ATPase central domain protein [Treponema brennaborense DSM
           12168]
 gi|332180377|gb|AEE16065.1| AAA ATPase central domain protein [Treponema brennaborense DSM
           12168]
          Length = 801

 Score =  156 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 67/338 (19%), Positives = 118/338 (34%), Gaps = 34/338 (10%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L       ++   + +RPRTL+E+ GQ       ++   A  A  + L   +F GPPG G
Sbjct: 3   LFDSRQGAKEPLAARMRPRTLDEYIGQDHIVGKGRLLRRAIAA--DQLTSAIFYGPPGTG 60

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSI 119
           KTTLA+V+A     NF + +  V+    ++   +   E        R +LF+DE+HR + 
Sbjct: 61  KTTLARVIANHTKSNFITLNA-VLTGVQNIRDSIAQAEQHYKLYGRRTILFVDEVHRWNR 119

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             ++ L P +E+  + L+    E P     K  +SR  +            PL+      
Sbjct: 120 SQQDALLPWVENGTIILVGATTENPFFEVNKALVSRSRVFQL--------KPLEQADLEK 171

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                   +      +RG     +   D A   +   + G  R     L    +      
Sbjct: 172 AARMALSDK------ERGYGRWNVVFEDGALEHLIETANGDARSLLNALELAVETTPQKW 225

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
               T              +   + +  + +         G    + ISA +   R    
Sbjct: 226 QPDATPPEPPDGQTIYISRETAEESIQRKVVL----YDRDGDYHYDIISAFIKSLRGRDP 281

Query: 298 DLIEPYMIQQGFIQRTPRG---RLLMPIAWQHLGIDIP 332
           D    ++ +       P G   R ++  A +  G+  P
Sbjct: 282 DAAMYWLARMIAAGEDP-GFIFRRMLISACEDTGLADP 318


>gi|145632980|ref|ZP_01788713.1| formyltetrahydrofolate deformylase [Haemophilus influenzae 3655]
 gi|144986636|gb|EDJ93202.1| formyltetrahydrofolate deformylase [Haemophilus influenzae 3655]
          Length = 446

 Score =  156 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 72/331 (21%), Positives = 119/331 (35%), Gaps = 51/331 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP +LE++ GQ       K   +A +A    +  ++  GPPG GKTTLA+++A+
Sbjct: 15  PLAAKMRPTSLEQYFGQSHLIGEGKPLRKAIQAGH--IHSMILWGPPGTGKTTLAEIIAQ 72

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            +       S        I +A D A      + + +LF+DE+HR +   ++   P +ED
Sbjct: 73  RINAEVERISAVTSGIKEIREAIDRAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIED 132

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             +  +    E PS       LSR        RV +L +         ++    + E   
Sbjct: 133 GTVIFIGATTENPSFELNNALLSR-------ARVYVLKSLTTAEIEQVLQQAVEDPE--- 182

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
               RG     L + +     +A    G  R+A   L  + D AE               
Sbjct: 183 ----RGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMAEETENGK--------- 229

Query: 250 LLRLAIDKMGFDQLDLRYLTMI-----ARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
                       ++D   L  +     AR    G    + ISA     R +  D    + 
Sbjct: 230 ------------KIDRTLLKEVLGERQARFDKQGDRFYDLISALHKSVRGSAPDAALYWY 277

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +       P    R L+ IA + +G   P 
Sbjct: 278 ARILTAGGDPLYVARRLLAIASEDVGNADPR 308


>gi|260582200|ref|ZP_05849994.1| formyltetrahydrofolate deformylase [Haemophilus influenzae NT127]
 gi|260094832|gb|EEW78726.1| formyltetrahydrofolate deformylase [Haemophilus influenzae NT127]
          Length = 446

 Score =  156 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 72/331 (21%), Positives = 119/331 (35%), Gaps = 51/331 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP +LE++ GQ       K   +A +A    +  ++  GPPG GKTTLA+++A+
Sbjct: 15  PLAAKMRPTSLEQYFGQSHLIGEGKPLRKAIQAGH--IHSMILWGPPGTGKTTLAEIIAQ 72

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            +       S        I +A D A      + + +LF+DE+HR +   ++   P +ED
Sbjct: 73  RINAEVERISAVTSGIKEIREAIDRAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIED 132

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             +  +    E PS       LSR        RV +L +         ++    + E   
Sbjct: 133 GTVIFIGATTENPSFELNNALLSR-------ARVYVLKSLTTAEIEQVLQQAIEDPE--- 182

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
               RG     L + +     +A    G  R+A   L  + D AE               
Sbjct: 183 ----RGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMAEETENGK--------- 229

Query: 250 LLRLAIDKMGFDQLDLRYLTMI-----ARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
                       ++D   L  +     AR    G    + ISA     R +  D    + 
Sbjct: 230 ------------KIDRTLLKEVLGERQARFDKQGDRFYDLISALHKSVRGSAPDAALYWY 277

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +       P    R L+ IA + +G   P 
Sbjct: 278 ARILTAGGDPLYVARRLLAIASEDVGNADPR 308


>gi|297588295|ref|ZP_06946938.1| AAA family ATPase [Finegoldia magna ATCC 53516]
 gi|297573668|gb|EFH92389.1| AAA family ATPase [Finegoldia magna ATCC 53516]
          Length = 431

 Score =  156 bits (394), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 72/345 (20%), Positives = 130/345 (37%), Gaps = 49/345 (14%)

Query: 2   MDREGL-LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD     L           + LRP++L+++ GQ       K+     KA  + +  ++F 
Sbjct: 1   MDLFEYNLQLQKENSSPLANRLRPKSLDKYFGQSHVVGEGKLLNRLIKA--DKIPSMIFY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDE 113
           GPPG GKTTLA++++ +    F   S  + +   D+  +++  +        + VLFIDE
Sbjct: 59  GPPGTGKTTLAEIISNQTNSLFERLSA-ISSGVKDIREVISTAKNNLSMYNKKTVLFIDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++ L   +ED  + L+    E P     K  LSR  +I           PL 
Sbjct: 118 IHRFNKSQQDALLGYVEDGTITLIGATTENPFFEVNKALLSRCQIIEL--------KPLT 169

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR-RVR 230
           D     I  N    +          +   + + ++A   +   + G  R A   L   V 
Sbjct: 170 DTDIRNIIENALTEDKK-------LREMNIQINEKAIDVLVNSANGDARSALNALEIAVE 222

Query: 231 DFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
              +V     I  +    ++ +     + +D+ +  Y                 ISA + 
Sbjct: 223 STDQVNGCLIIDEDAIKNSVFKP---VLKYDKEEDHY---------------NVISAFIK 264

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
             R +  D    Y+ +       P+   R ++  A + +G+  P 
Sbjct: 265 SMRGSDIDAALYYLARMIESGENPKFIARRMVIFASEDIGLANPE 309


>gi|308270409|emb|CBX27021.1| Replication-associated recombination protein A [uncultured
           Desulfobacterium sp.]
          Length = 456

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 72/327 (22%), Positives = 120/327 (36%), Gaps = 39/327 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RPR L EF GQ    +   +   A +   + +  ++  GPPG GKTTLA+++AR
Sbjct: 22  PLAEKMRPRNLNEFAGQEHVVAEGTLIRHAFEK--DQVFSMILWGPPGCGKTTLARIIAR 79

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAM 129
           E    F   S  V++   ++ A++   +        R +LF+DEIHR +   ++     +
Sbjct: 80  ETSSYFMHFSA-VLSGVKEIRAVIEEAKNQLKLFRKRSILFVDEIHRFNKAQQDAFLHHV 138

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E   + L+    E PS   +   LSR  +I   T      + + D               
Sbjct: 139 ESGLITLIGATTENPSFEVISPLLSRCRVITLKTLSDDDISRIID--------------S 184

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
                +RG     L++++E    +   S G  R+A   L      A   + KT   E   
Sbjct: 185 ALKDKERGLGELNLSLSEEVLSHLVRISDGDARMALNSLEIAAGIATGKN-KTQDNEQIY 243

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
             L      +    +  L Y          G      ISA     R +  D    ++ + 
Sbjct: 244 ITLN---DIENALQKKALLY-------DKKGEEHYNLISALHKSMRGSDPDAAVYWLARM 293

Query: 308 GFIQRTPR--GRLLMPIAWQHLGIDIP 332
                 P    R ++  A + +G   P
Sbjct: 294 LTAGEDPLFIARRMIRFASEDIGNADP 320


>gi|172058090|ref|YP_001814550.1| ATPase central domain-containing protein [Exiguobacterium sibiricum
           255-15]
 gi|171990611|gb|ACB61533.1| AAA ATPase central domain protein [Exiguobacterium sibiricum
           255-15]
          Length = 437

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 82/331 (24%), Positives = 129/331 (38%), Gaps = 50/331 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP++L+E  GQ        +   A  A  + L  V+F GPPG GKTTLA+V++ 
Sbjct: 13  PLANRMRPQSLDEIVGQRHLIGESTLLRRAILA--DRLGTVIFYGPPGTGKTTLARVISS 70

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAM 129
                F   +  V AK   L  +L          + + +LF+DEIHR + + ++ L PA+
Sbjct: 71  YTKSAFEQLNA-VTAKLDQLREVLKAAESRLQFDQQKTILFLDEIHRFNKMQQDALLPAL 129

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E   + L+    E PS       LSR T+    T       P  +   + +    ++ E 
Sbjct: 130 EAGTITLIGATTENPSFEVNAALLSRATVFRFET-------PTTEDLRVVLHRTLHDTE- 181

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR-RVRDFAEVAHAKTITREIA 246
                 RG     + VT+EA       S G  R     L   V    E+    TI   +A
Sbjct: 182 ------RGLGKYPITVTEEAVDHYVKLSDGDYRALLNALELAVLTTPEIDGEITIDLSVA 235

Query: 247 DAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           + ++ + A   DK G    D+                   ISA +   R +  D    ++
Sbjct: 236 EESIQQKALKYDKDGDRHYDV-------------------ISAFIKSIRGSDPDAALYWL 276

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                   +PR   R L   A + +G+  P 
Sbjct: 277 AVMIEAGESPRFIVRRLYVHAAEDIGLSDPQ 307


>gi|126728193|ref|ZP_01744009.1| ATPase, AAA family protein [Sagittula stellata E-37]
 gi|126711158|gb|EBA10208.1| ATPase, AAA family protein [Sagittula stellata E-37]
          Length = 436

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 72/336 (21%), Positives = 120/336 (35%), Gaps = 54/336 (16%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           S   +        LRP+TL E  GQ +               A +L  ++F GPPG+GKT
Sbjct: 10  SPADNTPRPLADRLRPQTLAEVIGQEQVLGPESPL--GVMLAAGSLGSIVFWGPPGVGKT 67

Query: 69  TLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           T+A+++A    ++F   S      P + K  + A L        +LF+DEIHR +   ++
Sbjct: 68  TIARLLADATDLHFVQISAIFTGVPELRKVFEAAKLRRQQGHGTLLFVDEIHRFNKAQQD 127

Query: 124 ILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
              P MED  + L+    E PS    +  LSR  ++                        
Sbjct: 128 GFLPHMEDGTILLVGATTENPSFELNRALLSRSQVLVL---------------------E 166

Query: 182 FYEIEDLKTIVQRGAKLTG--LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
              ++DL+ +  R   +    L + + A   +   + G  R    L+ +V          
Sbjct: 167 RLSVDDLEKLATRAETMLDRKLPLDEGARHALIDMADGDGRALLNLIEQV---------- 216

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
                     +       +G D L  R +   A+    G      ISA     R +  D 
Sbjct: 217 ----------MSWKIATPLGTDGLKTRLMKRAAQYDKSGDGHYNLISALHKSVRGSDPDA 266

Query: 300 IEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
              +  +       PR   R +  +A + +G+  P 
Sbjct: 267 ALYWFARMLDAGEDPRFLARRITRMAVEDIGLADPQ 302


>gi|282880078|ref|ZP_06288798.1| recombination factor protein RarA [Prevotella timonensis CRIS
           5C-B1]
 gi|281305951|gb|EFA97991.1| recombination factor protein RarA [Prevotella timonensis CRIS
           5C-B1]
          Length = 431

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 83/337 (24%), Positives = 130/337 (38%), Gaps = 65/337 (19%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +     +RPRTL+E+ GQ        V  +  ++    +   +  GPPG+GKTTLAQ+VA
Sbjct: 3   EPLAERMRPRTLDEYVGQQHLVGKDAVLRKMIESGH--VSSFILWGPPGVGKTTLAQIVA 60

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPA 128
            +L   F + S  V +   D+  ++   +          +LFIDEIHR S   ++ L  A
Sbjct: 61  NKLETPFYTLSA-VTSGVKDVRQVIERAKSNHFFQTASPILFIDEIHRFSKSQQDSLLGA 119

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           +E   + L+    E PS   ++  LSR  L         L  PL               E
Sbjct: 120 VERGIVTLIGATTENPSFEVIRPLLSRCQL--------YLLKPL-------------GKE 158

Query: 187 DLKTIVQRG------AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           DL  ++ R        K   + + +  A      S G  R    +L  V   AE      
Sbjct: 159 DLLKLLHRAVNEDVILKNRNIELQETGAL--LRYSGGDARKLLNILELVVSAAETEKV-V 215

Query: 241 ITREIADAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
           +T +I +  L +   A DK G    D+                   ISA +   R +  D
Sbjct: 216 VTDQIVEQQLQQNPLAYDKGGEMHYDI-------------------ISAFIKSIRGSDPD 256

Query: 299 LIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
               +M +       P+   R L+  A + +G+  P+
Sbjct: 257 AALYWMARMIEGGEDPQFIARRLVISAAEDIGLANPN 293


>gi|88860147|ref|ZP_01134786.1| putative polynucleotide enzyme with nucleotide triphosphate
           hydrolase domain [Pseudoalteromonas tunicata D2]
 gi|88818141|gb|EAR27957.1| putative polynucleotide enzyme with nucleotide triphosphate
           hydrolase domain [Pseudoalteromonas tunicata D2]
          Length = 446

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 75/328 (22%), Positives = 122/328 (37%), Gaps = 46/328 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP  L E+ GQ    +  K   +A  +       ++  GPPG GKTTLAQ++A 
Sbjct: 14  PLAARMRPNVLAEYCGQQHLLAQDKPLYQAILSGH--CHSMILWGPPGTGKTTLAQLIAH 71

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAME 130
                F   S  V A   ++   +   +       R +LF+DE+HR +   ++   P +E
Sbjct: 72  HATAQFIQLSA-VTAGVKEIRESVQQAKNSLQHGQRTLLFVDEVHRFNKSQQDAFLPHIE 130

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           D     +    E PS       LSR       TRV +L +   D     I     +   L
Sbjct: 131 DGTFLFVGATTENPSFALNNAILSR-------TRVYVLKSLTDDDLLQVINRALIQDPIL 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE-VAHAKTITREIAD 247
            T          +++ ++A   +   ++G  R A  LL +  D A+ +A  K I  ++ +
Sbjct: 184 ST--------LQISMDEKAKGALCAAAQGDARKALNLLEQSVDLAQSIAGKKVIDSQVLE 235

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
             L                     A+   GG    + ISA     R +  D    +  + 
Sbjct: 236 HVLPSHF-----------------AKYDKGGDEFYDLISAFHKSVRGSAPDAALYWYCRI 278

Query: 308 GFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                 P    R L+ IA + +G   P 
Sbjct: 279 LAGGGDPLYVARRLLAIATEDIGNADPR 306


>gi|317122073|ref|YP_004102076.1| recombination protein MgsA [Thermaerobacter marianensis DSM 12885]
 gi|315592053|gb|ADU51349.1| Recombination protein MgsA [Thermaerobacter marianensis DSM 12885]
          Length = 500

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 79/347 (22%), Positives = 136/347 (39%), Gaps = 52/347 (14%)

Query: 3   DREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           D   L ++  ++ +A +   +RPRTLEEF GQ       ++   A +A  + L  ++  G
Sbjct: 17  DLFTLAAQERARREAPLAERMRPRTLEEFVGQQHLVGPGRLLRRAIEA--DRLGSIILWG 74

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEI 114
           PPG GKTTLA+++AR    +F   +  V A   DL  ++   ++R        VLF+DE+
Sbjct: 75  PPGSGKTTLARIIARTTRAHFEPLNA-VTAGVADLRRVVEEAKERRALEGRSTVLFVDEV 133

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++ L P +E   + L+    E P    V   +SR  +            PL D
Sbjct: 134 HRWNRAQQDALLPHLESGLVALIGATTENPYFACVPPLVSRARIFRL--------EPLSD 185

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
                + L            +RG     + V  EA   +   + G  R A   L      
Sbjct: 186 EDVRRLLLRAL------ADPERGLGNYRVEVEPEALDHLVRVAGGDARSALNALELAVLT 239

Query: 233 AEVAHAKTI--TREIADAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAG 288
                      T  +A+ ++ +   A D  G +  D  +L+ + ++  G           
Sbjct: 240 TPPGEDGVRRITLAVAEESIQKRALAYDPTGDEHYD--HLSALIKSIRG----------- 286

Query: 289 LSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                 +  D    ++ +  +    PR   R L+  A + +G+  P 
Sbjct: 287 ------SDPDAAVYWLARMLYAGEDPRAIARRLLVHAAEDVGLADPR 327


>gi|292670832|ref|ZP_06604258.1| replication-associated recombination protein A [Selenomonas noxia
           ATCC 43541]
 gi|292647453|gb|EFF65425.1| replication-associated recombination protein A [Selenomonas noxia
           ATCC 43541]
          Length = 472

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 80/346 (23%), Positives = 133/346 (38%), Gaps = 52/346 (15%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M ++ GL  R   Q       +RP++LEEF GQ     + KV     +  ++ +  ++F 
Sbjct: 32  MDEQGGLFERTAYQ--PLAERVRPQSLEEFVGQEHLLGSGKVLRRLIE--SDHITSMIFW 87

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEI 114
           GPPG+GKTTLAQ++A +    F + S  V +   D+  ++          DR ++F+DEI
Sbjct: 88  GPPGVGKTTLAQIIAAQTKAKFITFSA-VTSGIKDIRTVMQEADRRRIYGDRIIVFVDEI 146

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++   P +E   + L+    E PS       LSR        RV +L     D
Sbjct: 147 HRFNKAQQDAFLPFVEKGSIVLIGATTENPSFEINSALLSRC-------RVFVLQGLTID 199

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
                ++              R  ++  + ++DE    IA  + G  R A   L  +   
Sbjct: 200 DIKRLLQHALSSD--------RELRVLRIHLSDEGIAAIAAFANGDARSALSTLEMLILN 251

Query: 233 AEVAHAKTITREIADA---ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGL 289
           A+    +    E   A       L  DK G +  +L                   ISA  
Sbjct: 252 ADERDGEIYVTEENLAQCITRKSLLYDKSGEEHYNL-------------------ISALH 292

Query: 290 SEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
              R++  D    ++ +       P    R +   A + +G+  P 
Sbjct: 293 KSMRNSDPDAAVYWLARMLEAGEDPLYVARRVTRFAAEDVGLADPR 338


>gi|197284594|ref|YP_002150466.1| recombination factor protein RarA [Proteus mirabilis HI4320]
 gi|194682081|emb|CAR41637.1| putative ATPase [Proteus mirabilis HI4320]
          Length = 449

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 79/337 (23%), Positives = 123/337 (36%), Gaps = 42/337 (12%)

Query: 8   LSRNVSQED--ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           LS + SQ +     + +RP TLE++ GQ    +  K    A KA    L  ++  GPPG 
Sbjct: 4   LSLDFSQNEFQPLAARMRPETLEQYIGQKHLLAEGKPLPRAIKAGQ--LHSMILWGPPGT 61

Query: 66  GKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GKTTLA+++ R    +    S        I  A D+A    N   R +LF+DE+HR +  
Sbjct: 62  GKTTLAEIIGRYAQADIERLSAVTSGIKEIRAAIDIAHQNRNAGRRTILFVDEVHRFNKS 121

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++   P +ED  +  +    E PS       LSR  +    +        +        
Sbjct: 122 QQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLRSLTETDIEQV-------- 173

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
                 ++      +RG     + + D     IA    G  R +  LL  + D AEV   
Sbjct: 174 ------LQQALDDTERGLGGRNIILPDNTRKMIAELVNGDARRSLNLLEMMADMAEVDSQ 227

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
              T       L  ++ ++              AR    G    + ISA     R +  D
Sbjct: 228 GKRTL--TAELLKEISGERS-------------ARFDNKGDRFYDLISALHKSVRGSAPD 272

Query: 299 LIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
               +  +       P    R L+ IA + +G   P 
Sbjct: 273 AALYWYARIITAGGDPLYVARRLLAIASEDVGNADPR 309


>gi|227356776|ref|ZP_03841161.1| recombination ATPase [Proteus mirabilis ATCC 29906]
 gi|227163066|gb|EEI48001.1| recombination ATPase [Proteus mirabilis ATCC 29906]
          Length = 457

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 79/337 (23%), Positives = 123/337 (36%), Gaps = 42/337 (12%)

Query: 8   LSRNVSQED--ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           LS + SQ +     + +RP TLE++ GQ    +  K    A KA    L  ++  GPPG 
Sbjct: 12  LSLDFSQNEFQPLAARMRPETLEQYIGQKHLLAEGKPLPRAIKAGQ--LHSMILWGPPGT 69

Query: 66  GKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GKTTLA+++ R    +    S        I  A D+A    N   R +LF+DE+HR +  
Sbjct: 70  GKTTLAEIIGRYAQADIERLSAVTSGIKEIRAAIDIAHQNRNAGRRTILFVDEVHRFNKS 129

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++   P +ED  +  +    E PS       LSR  +    +        +        
Sbjct: 130 QQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLRSLTETDIEQV-------- 181

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
                 ++      +RG     + + D     IA    G  R +  LL  + D AEV   
Sbjct: 182 ------LQQALDDTERGLGGRNIILPDNTRKMIAELVNGDARRSLNLLEMMADMAEVDSQ 235

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
              T       L  ++ ++              AR    G    + ISA     R +  D
Sbjct: 236 GKRTL--TAELLKEISGERS-------------ARFDNKGDRFYDLISALHKSVRGSAPD 280

Query: 299 LIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
               +  +       P    R L+ IA + +G   P 
Sbjct: 281 AALYWYARIITAGGDPLYVARRLLAIASEDVGNADPR 317


>gi|146282639|ref|YP_001172792.1| recombination factor protein RarA [Pseudomonas stutzeri A1501]
 gi|145570844|gb|ABP79950.1| ATPase, AAA family [Pseudomonas stutzeri A1501]
          Length = 441

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 74/338 (21%), Positives = 122/338 (36%), Gaps = 49/338 (14%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L SR    +    + LR  +L+E+ GQ    +  K   EA +    AL  ++F GPPG+G
Sbjct: 3   LFSREPVAQ-PLAARLRAASLDEYVGQEHLLARGKPLREALE--HGALHSMVFWGPPGVG 59

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALL-------TNLEDRDVLFIDEIHRLSI 119
           KTTLA+++A+    +F + S  V+A   ++   +            R +LF+DE+HR + 
Sbjct: 60  KTTLARLLAKVSDAHFETVSA-VLAGVKEIRQAVEIAKQQAAQYGRRTILFVDEVHRFNK 118

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             ++   P +ED  L  +    E PS       LSR  +    +        L  R    
Sbjct: 119 SQQDAFLPYVEDGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVTRALTE 178

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                           +G     L + +E+   +   + G  R    LL    D AE   
Sbjct: 179 ---------------PKGLGELHLTLPEESFQMLLAAADGDGRRLLNLLENASDLAEQGG 223

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
             +               D +G  +          R   GG    + ISA     R +  
Sbjct: 224 VISTDL----------LQDLLGDSR---------RRFDKGGEAFYDQISALHKSVRGSNP 264

Query: 298 DLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           D    +  +       P    R ++ +A + +G   P 
Sbjct: 265 DAALYWFARMLDGGCDPLYIARRVVRMASEEIGNADPR 302


>gi|260432475|ref|ZP_05786446.1| recombination factor protein RarA [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260416303|gb|EEX09562.1| recombination factor protein RarA [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 437

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 74/336 (22%), Positives = 123/336 (36%), Gaps = 54/336 (16%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           S   +        LRP+ L +  GQ +               + +L  ++F GPPG+GKT
Sbjct: 11  SSEPAPNRPLADRLRPQALSDVIGQQQVLGPEAPL--GVMLASGSLSSLIFWGPPGVGKT 68

Query: 69  TLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           T+A+++A+E  ++F   S      P + K  + A L        +LF+DEIHR +   ++
Sbjct: 69  TIARLLAKETDLHFEQISAIFTGVPDLKKVFEAAKLRRRNGKGTLLFVDEIHRFNKAQQD 128

Query: 124 ILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
              P MED  + L+    E PS       LSR  ++                        
Sbjct: 129 GFLPYMEDGTILLVGATTENPSFELNAAVLSRAQVLVL---------------------E 167

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
             ++ DL+ + QR  K  G A+    A   A++          LL  +   A  +    +
Sbjct: 168 RLDLADLERLTQRAEKELGKALPLTPAARDALQEMADGD-GRALLNLIEQIAAWSVDAPL 226

Query: 242 TREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
             +     L+R A   DK G +  +L                   ISA     R +  D 
Sbjct: 227 DPDALAKRLMRRAAKYDKSGDEHYNL-------------------ISALHKSVRGSDPDA 267

Query: 300 IEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
              +  +       PR   R +  +A + +G+  P 
Sbjct: 268 ALYWFARMLTGGEDPRYLARRITRMAVEDIGLADPQ 303


>gi|253700393|ref|YP_003021582.1| recombination factor protein RarA [Geobacter sp. M21]
 gi|251775243|gb|ACT17824.1| AAA ATPase central domain protein [Geobacter sp. M21]
          Length = 434

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 77/340 (22%), Positives = 131/340 (38%), Gaps = 52/340 (15%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L + N  +       +RPR++ ++ GQ       K+     +  ++ L  ++F GPPG G
Sbjct: 4   LFNGNREEFAPLAERMRPRSMAQYLGQGHLVGEGKMLRRLIE--SDRLTSLIFWGPPGSG 61

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSI 119
           KTTLA+++A     +F   S  +++   ++  ++   ED       R +LF+DEIHR + 
Sbjct: 62  KTTLARIIANATSSHFIFFSA-IMSGIKEIREVVKEAEDTLKYQGKRTILFVDEIHRFNK 120

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             ++   P +E     ++    E PS   +   LSR  ++           PL D   + 
Sbjct: 121 SQQDAFLPHVERGTFTIIGATTENPSFEVIAPLLSRCKVLVL--------QPLSDEDLLK 172

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
           I      +E      +RG     L  T EA   +A ++ G  R+A   L      A   H
Sbjct: 173 I------LEIALADRERGLGDLELGATAEALAFMAEQAAGDARVALNTLETASRLA---H 223

Query: 238 AKTITREIADAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDA 295
              IT E A  A+ +     DK G +                       ISA +   R +
Sbjct: 224 HGEITLESAREAVQKKPLLYDKGGEEHY-------------------NVISAFIKSMRGS 264

Query: 296 IEDLIEPYMIQQGFIQRTPRG--RLLMPIAWQHLGIDIPH 333
             D    ++ +       P    R ++  A + +G   P 
Sbjct: 265 DPDAALYWLARMLEAGEDPIFILRRMVIFASEDVGNADPR 304


>gi|119503243|ref|ZP_01625327.1| hypothetical protein MGP2080_11283 [marine gamma proteobacterium
           HTCC2080]
 gi|119460889|gb|EAW41980.1| hypothetical protein MGP2080_11283 [marine gamma proteobacterium
           HTCC2080]
          Length = 444

 Score =  156 bits (393), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 74/329 (22%), Positives = 119/329 (36%), Gaps = 52/329 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              S LRP +L  F GQ            A +A    L   L  GPPG+GKTTLA++ A 
Sbjct: 18  PLASRLRPSSLASFVGQEHILGPDAPLAMALEAGN--LHSFLLWGPPGVGKTTLARLCAG 75

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAME 130
                F   S  V++   ++  ++ +         R VLF+DE+HR +   ++   P +E
Sbjct: 76  TAKAQFYPISA-VLSGVKEIRQVIESARVGLSQGLRTVLFVDEVHRFNKAQQDAFLPHVE 134

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           D  +  +    E PS       LSR  +                           E   L
Sbjct: 135 DGTITFIGATTENPSFEVNAALLSRVRVYRL---------------------RGLEQHHL 173

Query: 189 KTIVQR--GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
            TI++R   A+L  L    +    +A+++ G  R A   L    D A V        E  
Sbjct: 174 VTILKRALAAELPELHAETKILEALALQADGDARRALGQLEIAADLARV--------EDG 225

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
              + +  ++++G             R   GG    + ISA     R +  D    + ++
Sbjct: 226 RKTIDQKVLEELGQGSP--------RRFDKGGDAFYDQISALHKSVRGSDPDASLYWFVR 277

Query: 307 QGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                  P    R ++ +A + +G   P 
Sbjct: 278 MLDGGCDPLYIARRVVRMASEDIGNADPR 306


>gi|300727152|ref|ZP_07060571.1| ATPase, AAA family [Prevotella bryantii B14]
 gi|299775696|gb|EFI72287.1| ATPase, AAA family [Prevotella bryantii B14]
          Length = 423

 Score =  156 bits (393), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 76/331 (22%), Positives = 121/331 (36%), Gaps = 54/331 (16%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +     +RPRTL+E+ GQ        V      A    +   +  GPPG+GKTTLA ++A
Sbjct: 3   EPLAERMRPRTLDEYVGQKHLVGEGAVLRNMIDA--GRIPSFILWGPPGVGKTTLAHIIA 60

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPA 128
            +L   F + S  V +   D+  ++              +LFIDEIHR S   ++ L  A
Sbjct: 61  NKLETPFYTLSA-VTSGVKDVREVIDKAAKSQFFNTISPILFIDEIHRFSKSQQDSLLGA 119

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           +E   + L+    E PS   ++  LSR  L    +        L  R             
Sbjct: 120 VERGTVTLIGATTENPSFEVIRPLLSRCQLYVLKSLNKDDLLDLIHR------------- 166

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
            L   V+   K   + + +  A      S G  R    +L  V +         IT ++ 
Sbjct: 167 ALTEDVE--LKKRNIILKEHGAL--LRYSGGDARKLLNILELVVES--EMGDVEITDDLV 220

Query: 247 DAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
              L +   A DK G    D+                   ISA +   R +  D    ++
Sbjct: 221 VKRLQQNPLAYDKQGEMHYDI-------------------ISAFIKSIRGSDPDAALYWL 261

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +       P+   R L+  A + +G+  P+
Sbjct: 262 ARMIEGGEDPQFIARRLVISASEDIGLANPN 292


>gi|317047548|ref|YP_004115196.1| AAA ATPase central domain-containing protein [Pantoea sp. At-9b]
 gi|316949165|gb|ADU68640.1| AAA ATPase central domain protein [Pantoea sp. At-9b]
          Length = 449

 Score =  156 bits (393), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 74/341 (21%), Positives = 122/341 (35%), Gaps = 40/341 (11%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M    L   + ++     + +RP TL ++ GQ    +  K    A +A    L  ++  G
Sbjct: 1   MSNLSLDFASSNEFQPLAARMRPVTLAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWG 58

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHR 116
           PPG GKTTLA+++A     +    S        I +A + A     +  R +LF+DE+HR
Sbjct: 59  PPGTGKTTLAEIIAHYGKADVERISAVTSGVKEIREAIERARQNRQVGRRTILFVDEVHR 118

Query: 117 LSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRF 174
            +   ++   P +ED  +  +    E PS       LSR  +    +        +    
Sbjct: 119 FNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLTTADIEQV---- 174

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
                     ++       RG   + + + D     IA    G  R A   L  + D AE
Sbjct: 175 ----------LQQAMQDSTRGYGNSDILLPDNTRRMIAELVNGDARRALNTLEMMADMAE 224

Query: 235 VAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRD 294
              A    RE+    L  ++ ++              AR    G    + ISA     R 
Sbjct: 225 TNGAG--QRELTPQLLNEVSGERA-------------ARFDKKGDRFYDLISALHKSVRG 269

Query: 295 AIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +  D    +  +       P    R L+ IA + +G   P 
Sbjct: 270 SAPDAALYWYARIITAGGDPLYVARRLLAIASEDVGNADPR 310


>gi|255262261|ref|ZP_05341603.1| recombination factor protein RarA [Thalassiobium sp. R2A62]
 gi|255104596|gb|EET47270.1| recombination factor protein RarA [Thalassiobium sp. R2A62]
          Length = 464

 Score =  156 bits (393), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 72/338 (21%), Positives = 124/338 (36%), Gaps = 58/338 (17%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           + + +        LRP++L E  GQ +               +++L  ++F GPPG+GKT
Sbjct: 39  TADSTAPRPLADRLRPKSLGEVIGQDQVLGPEAPL--GVMLASQSLSSLIFWGPPGVGKT 96

Query: 69  TLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           T+A+++A E  ++F   S      P + K  + A +        +LF+DEIHR +   ++
Sbjct: 97  TIARLLADETDLHFIQISAIFTGVPELRKVFEAAKIRRQNGKGTLLFVDEIHRFNKAQQD 156

Query: 124 ILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
              P MED  + L+    E PS       LSR  ++                        
Sbjct: 157 GFLPHMEDGTILLVGATTENPSFELNAAVLSRSQVLVL---------------------E 195

Query: 182 FYEIEDLKTIVQRGAKLTG--LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
              + DL+ + QR  +     L +   A   +   + G  R    L+ +V   A     K
Sbjct: 196 RLSLTDLELMTQRAEQELDRKLPLDGHAREALLEMADGDGRALLNLIEQV---AAWKADK 252

Query: 240 TITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
            +        L++ A   DK G +  +L                   ISA     R +  
Sbjct: 253 PLDTNALTKRLMKRAAKYDKSGDEHYNL-------------------ISALHKSVRGSDP 293

Query: 298 DLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           D    +  +       PR   R +  +A + +G+  P 
Sbjct: 294 DAALYWFARMLTGGEDPRFLARRITRMAVEDIGLADPQ 331


>gi|311280198|ref|YP_003942429.1| AAA ATPase central domain-containing protein [Enterobacter cloacae
           SCF1]
 gi|308749393|gb|ADO49145.1| AAA ATPase central domain protein [Enterobacter cloacae SCF1]
          Length = 447

 Score =  156 bits (393), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 79/342 (23%), Positives = 121/342 (35%), Gaps = 42/342 (12%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M +     S N  Q     + +RP TL ++ GQ    +  K    A +A    L  ++  
Sbjct: 1   MSNLSLDFSDNAFQ--PLAARMRPETLAQYIGQQHLLAPGKPLPRAIEAGH--LHSMILW 56

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIH 115
           GPPG GKTTLA+V+AR    +    S        I +A + A    N   R +LF+DE+H
Sbjct: 57  GPPGTGKTTLAEVIARYASADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVH 116

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P +ED  +  +    E PS       LSR        RV LL +   D 
Sbjct: 117 RFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSR-------ARVYLLKSLSVDD 169

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
             + +     +         RG     + + D+    IA    G  R A   L  + D A
Sbjct: 170 IELVLTQAMDDT-------SRGYGGQNIVLPDDTRRAIAELVNGDARRALNTLEMMADMA 222

Query: 234 EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
           E   A     +      +         ++ D  Y               + ISA     R
Sbjct: 223 ESDDAGKRVLKAGLLTEIAGERSARFDNKGDRFY---------------DLISALHKSVR 267

Query: 294 DAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +  D    +  +       P    R  + IA + +G   P 
Sbjct: 268 GSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPR 309


>gi|117620641|ref|YP_856398.1| recombination factor protein RarA [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117562048|gb|ABK38996.1| ATPase, AAA family [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 451

 Score =  156 bits (393), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 72/327 (22%), Positives = 116/327 (35%), Gaps = 43/327 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP+TLE++ GQ       K   +A  A       ++  GPPG GKTTLA+++A 
Sbjct: 20  PLAARMRPQTLEQYIGQQHILGPDKPLRKAILAGH--CHSMILWGPPGTGKTTLAELMAH 77

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130
                    S  V +   ++ A +   ++      R +LF+DE+HR +   +++  P +E
Sbjct: 78  YCQAEVERLSA-VTSGIKEIRAAIDKAKENSWRGVRTILFVDEVHRFNKSQQDVFLPHIE 136

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           D  +  +    E PS       LSR        RV LL    ++     I     +    
Sbjct: 137 DGTITFIGATTENPSFELNNALLSR-------ARVYLLKRLEEEDILTLIDQAMQDA--- 186

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
                RG     L         +A    G  R +   L  + D AE   +     +    
Sbjct: 187 -----RGLNDPALTFAPGVKEALAKAVDGDGRKSLNYLELLADMAEPDGSGHKLIDSTLL 241

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           A +                   +AR   GG    + ISA     R +  D    +  +  
Sbjct: 242 AAVVGEH---------------VARFDKGGDHFYDLISAVHKSIRGSAPDAALYWYARMV 286

Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIPH 333
                P    R L+ IA + +G   P 
Sbjct: 287 SAGCDPLYIARRLLAIASEDVGNADPR 313


>gi|300087469|ref|YP_003757991.1| ATPase central domain-containing protein [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527202|gb|ADJ25670.1| AAA ATPase central domain protein [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 442

 Score =  156 bits (393), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 78/332 (23%), Positives = 121/332 (36%), Gaps = 51/332 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RPRTL+E+ GQ            A +  +  L  ++  GPPG GKTTLA ++AR
Sbjct: 19  PLAARMRPRTLDEYVGQEHLVGQGTALRRALE--SGKLPSLILWGPPGSGKTTLANLLAR 76

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAM 129
               +F   S  V A   DL  ++     R        +LFIDEIHR +   ++ + P +
Sbjct: 77  ATSAHFSPVSA-VSAGVADLRKVIEEARQRRLGEGRGTILFIDEIHRFNKSQQDTILPFV 135

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ED  + L+    E PS   +   LSR                     G+        IE 
Sbjct: 136 EDGTVVLIGATTENPSFEVISPLLSRARTFVLK--------------GLSETDMKSIIER 181

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI--TREI 245
             +   RG   + + ++ EA   I   + G  RIA  +L        V  +     +R+ 
Sbjct: 182 AVSDRDRGIGESRVDLSPEAMDRIISLASGDARIALNILELAAGVTPVDESGRRKVSRQT 241

Query: 246 ADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
            D A        D+ G    D+                   ISA     R +  D    +
Sbjct: 242 VDEAAQSKTLLYDRAGEQHFDI-------------------ISALHKSMRGSDPDASLYW 282

Query: 304 MIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           + +       P    R L+  A + +G+  P 
Sbjct: 283 LGRMLEAGEDPMYVARRLVRFAAEDVGLADPQ 314


>gi|254556460|ref|YP_003062877.1| recombination factor protein RarA [Lactobacillus plantarum JDM1]
 gi|254045387|gb|ACT62180.1| recombination factor protein RarA [Lactobacillus plantarum JDM1]
          Length = 449

 Score =  156 bits (393), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 72/347 (20%), Positives = 125/347 (36%), Gaps = 58/347 (16%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M +E L + + S        +RP TL +F GQ       K+  +      + L  ++F G
Sbjct: 1   MRQESLFNPDKSSSSPLAYRVRPVTLADFKGQEHLLGPGKLLRQLI--AEDQLPSLIFWG 58

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHR 116
           PPG+GKTTLA+++A++   +F + S        I +  D A    +  ++ ++FIDEIHR
Sbjct: 59  PPGVGKTTLAEIIAQQTQSHFITFSAVTSGIKEIRQIMDEAEANRDFGEKTIVFIDEIHR 118

Query: 117 LSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGL-----LTNP 169
            +   ++   P +E   + L+    E PS       LSR  ++             L   
Sbjct: 119 FNKAQQDAFLPYVERGSITLIGATTENPSFEINAALLSRCKVLVLKALTPNALEAVLQGA 178

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           LQ+  G P                       + +  +    IA  + G  R+A   L   
Sbjct: 179 LQNPKGFPD--------------------LEITMQPDTLRLIAEFANGDARMALNTLEMA 218

Query: 230 RDFAEVAHAKTITREIADAAL---LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETIS 286
               +             + L     L  DK G +  ++                   IS
Sbjct: 219 VLNGDRDGKHVTITTAGLSQLINTKSLRYDKHGEEHYNI-------------------IS 259

Query: 287 AGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
           A     R++  D    ++++       P    R L+  A + +G+  
Sbjct: 260 ALHKSMRNSDVDAAIYWLMRMLAGGEDPLYIARRLIRFASEDIGLAD 306


>gi|309388968|gb|ADO76848.1| Recombination protein MgsA [Halanaerobium praevalens DSM 2228]
          Length = 447

 Score =  156 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 73/347 (21%), Positives = 134/347 (38%), Gaps = 51/347 (14%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M+     ++    +      +RP++L EF GQ E     K+   A KA  + L  ++F G
Sbjct: 1   MNLFENEAKAEKNDHPLAYRMRPQSLAEFYGQAEIVGENKLLSRAIKA--DRLQSLIFYG 58

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEI 114
           PPG GKT+LAQV+A +   +F   +  V A   D+  ++   +        + +LFIDEI
Sbjct: 59  PPGTGKTSLAQVIANQTEADFVKLNA-VTAGVKDIREVIKKAKSNRNLYNSKTILFIDEI 117

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++ L P++E   + ++    E P        LSR       +R+  L     D
Sbjct: 118 HRFNKSQQDALLPSVEKGTIIMIGATTENPYFEVNSPLLSR-------SRIFRLEKLNSD 170

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           +  + ++             +RG     + +  +    I   + G  R+A   L      
Sbjct: 171 QIVLILKAALKNR-------KRGLGKLNIEIKPKLLNFIGQLANGDARVALNTLELAVLT 223

Query: 233 AEVAHAKTI--TREIADAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAG 288
                   I  T+ I + ++ +     D+ G    D+                   +SA 
Sbjct: 224 TPPNKKGIIKLTKTIIEESMQKKILNYDRSGDQHYDI-------------------VSAF 264

Query: 289 LSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +   R +  D    ++ +       P+   R ++  A + +G+  PH
Sbjct: 265 IKSMRGSDPDAAIYWLARMIVSGEDPKFIARRVIIHAAEDVGMADPH 311


>gi|83941468|ref|ZP_00953930.1| ATPase, AAA family protein [Sulfitobacter sp. EE-36]
 gi|83847288|gb|EAP85163.1| ATPase, AAA family protein [Sulfitobacter sp. EE-36]
          Length = 435

 Score =  156 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 82/345 (23%), Positives = 130/345 (37%), Gaps = 55/345 (15%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M D  G  +  V      ++  LRPR+L E  GQ +              ++ +L  ++F
Sbjct: 1   MADLFGSDAPAVESGHRPLADRLRPRSLGEVIGQSQVLGPDAPL--TVMLQSGSLGSLIF 58

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEI 114
            GPPG+GKTT+A+++A E  ++F   S      P + K  D A +        +LF+DEI
Sbjct: 59  WGPPGVGKTTIARLLADETDLHFVQISAIFSGVPELRKVFDAAKIRRQNGRGTLLFVDEI 118

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++   P MED  + L+    E PS       LSR  ++           PL D
Sbjct: 119 HRFNKAQQDGFLPHMEDGTILLVGATTENPSFELNAAVLSRSQVLVLERL------PLAD 172

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLT--GLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
                          L+ + QR  K    GL +   A   +   + G  R    L+ +V 
Sbjct: 173 ---------------LERLAQRAEKELGRGLPLDGPARENLLEMADGDGRALLNLIEQV- 216

Query: 231 DFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
             A       +  +   A L+R A                 A+   GG      ISA   
Sbjct: 217 --AAWKVEGKLDGKALSARLMRRA-----------------AQYDKGGDAHYNLISALHK 257

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
             R +  D    ++ +       PR   R +  +A + +G+  P 
Sbjct: 258 SVRGSDPDAALYWLARMLEGGEDPRYLMRRITRMAVEDIGLADPQ 302


>gi|225377756|ref|ZP_03754977.1| hypothetical protein ROSEINA2194_03407 [Roseburia inulinivorans DSM
           16841]
 gi|225210433|gb|EEG92787.1| hypothetical protein ROSEINA2194_03407 [Roseburia inulinivorans DSM
           16841]
          Length = 443

 Score =  156 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 77/343 (22%), Positives = 122/343 (35%), Gaps = 44/343 (12%)

Query: 2   MDREGLL-SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD    +  +N  +E    S LRP TL+E  GQ       K+   A KA  + L  ++  
Sbjct: 1   MDLFDYMREQNREKESPLASRLRPATLDEMVGQQHIIGKDKLLYRAIKA--DKLSSIILY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDE 113
           GPPG GKTTLA+V+A      F   +    A   D+  ++   +        + +LFIDE
Sbjct: 59  GPPGTGKTTLAKVIANTTSAEFLQINA-TSAGKKDMEDVIAQAKNNQGMYGKKTILFIDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++ L P +ED  + L+    E P        LSR                  
Sbjct: 118 IHRFNKGQQDYLLPFVEDGTVILIGATTENPYFEVNGALLSR------------------ 159

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
               I   L     ED+KT++ R        +    A            +A    R    
Sbjct: 160 ---SIIFELKNLSTEDIKTLILRAVNDKEKGMGAYDAVIEEEALDFLADVANGDARAALT 216

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
             E+     +T E +D          +  +         + R    G    +T+SA +  
Sbjct: 217 AIEL---GILTTERSDD-----GKIHITLEVASECIQKRVVRYDKTGDNHYDTVSAFIKS 268

Query: 292 PRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
            R +  D    Y+ +  +     +   R +M  A + +    P
Sbjct: 269 MRGSDPDAAVYYLARMLYAGEDIKFIARRIMICAAEDVSNADP 311


>gi|145652290|gb|ABP88206.1| hypothetical protein [Borrelia lonestari]
          Length = 157

 Score =  156 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 74/150 (49%), Positives = 103/150 (68%), Gaps = 1/150 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           + +R   LS N     D + + LRP++L EF GQ     NL +FI A+K R E+LDHV  
Sbjct: 8   LQERTNFLSSNKDFLYDTNENELRPKSLVEFVGQSHIKENLNIFIRASKDRNESLDHVFL 67

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+    + TS P + K  D+  +LT L+D+ +LFIDE+HRL  
Sbjct: 68  SGPPGLGKTTLASIVAFEMNATIKVTSAPALDKPKDIVGILTTLDDKSILFIDELHRLKP 127

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKI 149
           +VEE+LY AMED+++D ++G+GPSAR+V+I
Sbjct: 128 VVEEMLYIAMEDYKIDWIIGQGPSARTVRI 157


>gi|218710024|ref|YP_002417645.1| recombination factor protein RarA [Vibrio splendidus LGP32]
 gi|218323043|emb|CAV19220.1| Hypothetical protein VS_2044 [Vibrio splendidus LGP32]
          Length = 451

 Score =  156 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 74/327 (22%), Positives = 114/327 (34%), Gaps = 42/327 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP T+E++ GQ       K    A +A    +  ++  GPPG GKTTLA+V A 
Sbjct: 18  PLAARMRPETVEQYIGQQHILGPGKPLRRALEAGH--IHSMILWGPPGTGKTTLAEVAAN 75

Query: 77  ELGVNFRSTSGPVIAKAGDL------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
                    S  V +   D+      A        R +LF+DE+HR +   ++   P +E
Sbjct: 76  YANAEVERVSA-VTSGVKDIRIAIEKARENKQAGRRTILFVDEVHRFNKSQQDAFLPHIE 134

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           D  +  +    E PS       LSR  +   T+      + L  R  I            
Sbjct: 135 DGTVTFIGATTENPSFELNNALLSRARVYKLTSLNTEDIS-LVIRQAI------------ 181

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
               QRG               +A    G  R++   L  + D AE        + I   
Sbjct: 182 -EDKQRGLGDVTADFAGNVLDRLAELVNGDARMSLNYLELLYDMAEDNDKGE--KAITLQ 238

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  +A +K             +AR    G +  + ISA     R +  D    +  +  
Sbjct: 239 LLAEVAGEK-------------VARFDNKGDIWYDLISAVHKSIRGSNPDAALYWSARMI 285

Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIPH 333
                P    R L+ IA + +G   P 
Sbjct: 286 AAGCDPLYIVRRLLAIASEDIGNADPR 312


>gi|148826111|ref|YP_001290864.1| recombination factor protein RarA [Haemophilus influenzae PittEE]
 gi|148716271|gb|ABQ98481.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Haemophilus
           influenzae PittEE]
          Length = 453

 Score =  156 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 71/331 (21%), Positives = 118/331 (35%), Gaps = 51/331 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP  LE++ GQ       K   +A +A    +  ++  GPPG GKTTLA+++A+
Sbjct: 15  PLAAKMRPTNLEQYFGQSHLIGEGKPLRKAIQAGH--IHSMILWGPPGTGKTTLAEIIAQ 72

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            +       S        I +A D A      + + +LF+DE+HR +   ++   P +ED
Sbjct: 73  RINAEVERISAVTSGIKEIREAIDRAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIED 132

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             +  +    E PS       LSR        RV +L +         ++    + E   
Sbjct: 133 GTVIFIGATTENPSFELNNALLSR-------ARVYVLKSLTTAEIEQVLQQAVEDPE--- 182

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
               RG     L + +     +A    G  R+A   L  + D A+               
Sbjct: 183 ----RGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMADEMENGK--------- 229

Query: 250 LLRLAIDKMGFDQLDLRYLTMI-----ARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
                       ++D   L  +     AR    G    + ISA     R +  D    + 
Sbjct: 230 ------------KIDRTLLKEVLGERQARFDKQGDRFYDLISALHKSVRGSAPDAALYWY 277

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +       P    R L+ IA + +G   P 
Sbjct: 278 ARILTAGGDPLYVARRLLAIASEDVGNADPR 308


>gi|146293105|ref|YP_001183529.1| recombination factor protein RarA [Shewanella putrefaciens CN-32]
 gi|145564795|gb|ABP75730.1| Recombination protein MgsA [Shewanella putrefaciens CN-32]
          Length = 443

 Score =  156 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 76/337 (22%), Positives = 125/337 (37%), Gaps = 48/337 (14%)

Query: 8   LSRNVSQE-DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           LS N + +     + +RPR++ E+ GQ       +   +A +A       ++  GPPG G
Sbjct: 4   LSFNFAPDFRPLAARMRPRSIAEYIGQAHLLGEGQPLRKALEAGRA--HSMMLWGPPGTG 61

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSI 119
           KTTLA+++A+    +    S  V +   ++ A +   +        R +LF+DE+HR + 
Sbjct: 62  KTTLAELIAQYSNAHVERISA-VTSGVKEIRAAIEQAKAIAESRGQRTLLFVDEVHRFNK 120

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             ++   P +ED  +  +    E PS       LSR        RV L+     +     
Sbjct: 121 SQQDAFLPFIEDGTVIFIGATTENPSFEINNALLSR-------ARVYLIKRLSNNEIAHI 173

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
           +     + E       RG  L  L + +    ++A    G  R A  LL  + D   V+ 
Sbjct: 174 VTQALADTE-------RGLGLRQLEMPESVLIKLAQLCDGDARKALNLLELMSDM--VSD 224

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
             T T E+             GFD                G    + ISA     R +  
Sbjct: 225 NDTFTLEMLV---QVAGHQVAGFD--------------KNGDQFYDLISAVHKSIRGSAP 267

Query: 298 DLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           D    +  +       P    R L+ IA + +G   P
Sbjct: 268 DAALYWYCRILEGGGDPLYVARRLLAIASEDVGNADP 304


>gi|145627717|ref|ZP_01783518.1| formyltetrahydrofolate deformylase [Haemophilus influenzae 22.1-21]
 gi|145639902|ref|ZP_01795502.1| formyltetrahydrofolate deformylase [Haemophilus influenzae PittII]
 gi|144979492|gb|EDJ89151.1| formyltetrahydrofolate deformylase [Haemophilus influenzae 22.1-21]
 gi|145270993|gb|EDK10910.1| formyltetrahydrofolate deformylase [Haemophilus influenzae PittII]
 gi|309751081|gb|ADO81065.1| Recombination factor RarA [Haemophilus influenzae R2866]
          Length = 446

 Score =  155 bits (392), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 71/331 (21%), Positives = 119/331 (35%), Gaps = 51/331 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP +LE++ GQ       K   +A +A    +  ++  GPPG GKTTLA+++A+
Sbjct: 15  PLAARMRPTSLEQYFGQSHLIGEGKPLRKAIQAGH--IHSMILWGPPGTGKTTLAEIIAQ 72

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            +       S        I +A D A      + + +LF+DE+HR +   ++   P +ED
Sbjct: 73  RINAEVERISAVTSGIKEIREAIDRAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIED 132

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             +  +    E PS       LSR        RV +L +         ++    + E   
Sbjct: 133 GTVIFIGATTENPSFELNNALLSR-------ARVYVLKSLTTAEIEQVLQQAVEDPE--- 182

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
               RG     L + +     +A    G  R+A   L  + D A+               
Sbjct: 183 ----RGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMADETENGK--------- 229

Query: 250 LLRLAIDKMGFDQLDLRYLTMI-----ARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
                       ++D   L  +     AR    G    + ISA     R +  D    + 
Sbjct: 230 ------------KIDRTLLKEVLGERQARFDKQGDRFYDLISALHKSVRGSAPDAALYWY 277

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +       P    R L+ IA + +G   P 
Sbjct: 278 ARILTAGGDPLYVARRLLAIASEDVGNADPR 308


>gi|148828420|ref|YP_001293173.1| recombination factor protein RarA [Haemophilus influenzae PittGG]
 gi|148719662|gb|ABR00790.1| outer-membrane lipoprotein carrier protein precursor [Haemophilus
           influenzae PittGG]
          Length = 446

 Score =  155 bits (392), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 67/331 (20%), Positives = 116/331 (35%), Gaps = 51/331 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP +LE++ GQ       K   +A +A    +  ++F GPPG GKTTLA+++A+
Sbjct: 15  PLAAKMRPTSLEQYFGQSHLIGEGKPLRKAIQAGH--IHSMIFWGPPGTGKTTLAEIIAQ 72

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            +                I +A D A      + + +LF+DE+HR +   ++   P +ED
Sbjct: 73  CINAEVERIFAVTSGIKEIREAIDRAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIED 132

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             +  +    E PS       LSR  +    +        +              ++   
Sbjct: 133 GTVIFIGATTENPSFELNNALLSRARVYVLKSLTTAEIEQI--------------LQQAI 178

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
              +RG     L + +     +A    G  R+A   L  + D A+               
Sbjct: 179 EDPKRGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMADETDNGK--------- 229

Query: 250 LLRLAIDKMGFDQLDLRYLTMI-----ARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
                       ++D   L  +     AR    G    + ISA     R +  D    + 
Sbjct: 230 ------------KIDRTLLKEVLGERQARFDKQGDRFYDLISALHKSVRGSAPDAALYWY 277

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +       P    R L+ IA + +G   P 
Sbjct: 278 ARILTAGGDPLYVARRLLAIASEDVGNADPR 308


>gi|116624471|ref|YP_826627.1| recombination factor protein RarA [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116227633|gb|ABJ86342.1| Recombination protein MgsA [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 434

 Score =  155 bits (392), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 75/343 (21%), Positives = 132/343 (38%), Gaps = 55/343 (16%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M        +V  E   ++  +RP +L+E+ GQ       K      +   + L  ++  
Sbjct: 1   MSLFDTTPPDVRDEKRPLADRMRPTSLDEYIGQDHILGPGKPLRRQIER--DELTSIILW 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAAL------LTNLEDRDVLFIDEI 114
           GPPG+GKTTLA ++A+     F   S  V++   ++ A+      L  L  R +LF+DEI
Sbjct: 59  GPPGVGKTTLAHLIAKVTKCEFIPFSA-VLSGMKEIKAVMVDAEKLRRLGRRTILFVDEI 117

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++   P +E   + L+    E PS   +   LSR  + A              
Sbjct: 118 HRFNKAQQDAFLPYVERGDIILIGATTENPSFEVIAALLSRSRVYALRA----------- 166

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
                     + + ++ T+++R   +  L  +D+   +I + S G  R A   L      
Sbjct: 167 ----------FTVPEIVTMLKRALPVLHLQASDDLLEQIGIYSNGDGRQAYNTL------ 210

Query: 233 AEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEP 292
            E A A +   E+ + A+          D +  + L        GG      ISA     
Sbjct: 211 -EAAAAASSGGELTEEAVQ---------DAMQRKVLL----YDKGGEEHFNLISALHKSV 256

Query: 293 RDAIEDLIEPYMIQQGFI--QRTPRGRLLMPIAWQHLGIDIPH 333
           R +  D    ++ +       R    R L+ +A + + +  P 
Sbjct: 257 RSSDVDAALYWLTRMLEAGEDRMYIARRLVRMAIEDISLADPR 299


>gi|167630476|ref|YP_001680975.1| ATPase, putative [Heliobacterium modesticaldum Ice1]
 gi|167593216|gb|ABZ84964.1| ATPase, putative [Heliobacterium modesticaldum Ice1]
          Length = 441

 Score =  155 bits (392), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 83/344 (24%), Positives = 131/344 (38%), Gaps = 49/344 (14%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD     S  V  ++  ++  +RPR+L+E +GQ        +F        + L   +  
Sbjct: 1   MDLFSYQSEAVKSKEGPLAFRMRPRSLDEVSGQSHLLKKGSLFRRMIDE--DKLQSFILY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDE 113
           GPPG GKTT+A+++A+     F + S  V A   D+  +    E+R        +LFIDE
Sbjct: 59  GPPGTGKTTIARLIAQTTESPFVTLSA-VTANTSDIKKVAKEAEERLSFNQKRTILFIDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   +++L P +ED  L L+    E P        LSR  +             L 
Sbjct: 118 IHRFNKAQQDLLLPIVEDGTLILIGATTENPLYELNAALLSRLRVYLLQPLKEEELLSLL 177

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R                T  +RG  L+G A+T+EA   I   ++G  R A  +L  V  
Sbjct: 178 KR--------------ALTDSERGLGLSGNALTEEALALIVQAAKGDARAALTILDMVAG 223

Query: 232 FAEVAHAKTITREIAD-AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
                       E+A+    + +  DK G    D                   TISA + 
Sbjct: 224 VHGDTDQPIGASEVAEVTGRVAVYYDKKGDRHYD-------------------TISAFIK 264

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
             R +  D    ++         P    R ++  A + +G+  P
Sbjct: 265 SIRGSDPDAALYWLAVMLEAGEDPLFIARRIVIHAAEDIGMADP 308


>gi|281425637|ref|ZP_06256550.1| ATPase, AAA family [Prevotella oris F0302]
 gi|281400224|gb|EFB31055.1| ATPase, AAA family [Prevotella oris F0302]
          Length = 423

 Score =  155 bits (392), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 75/329 (22%), Positives = 125/329 (37%), Gaps = 50/329 (15%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +     +RP +L+E+ GQ        V  +   A    +   +  GPPG+GKTTLAQ++A
Sbjct: 3   EPLAERMRPHSLDEYVGQQHLVGRGVVLRKMIDA--GRISSFILWGPPGVGKTTLAQIIA 60

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPA 128
            +L   F + S  V +   D+  ++   ++         +LFIDEIHR S   ++ L  A
Sbjct: 61  NKLETPFYTLSA-VTSGVKDVRDVIEKAKNNRFFNTASPILFIDEIHRFSKSQQDSLLGA 119

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           +E   + L+    E PS   ++  LSR  L    +        L +R             
Sbjct: 120 VERGVVTLIGATTENPSFEVIRPLLSRCQLYVLKSLDKEDMLQLVNR------------- 166

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
            + T V+   K   + + +  A      S G  R    +L  V + +E     T     +
Sbjct: 167 AITTDVE--LKKKHIELRESGAL--LRYSGGDARKLLNILELVIEASESEVVITDKLVES 222

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
                 LA DK G    D+                   ISA +   R +  D    ++ +
Sbjct: 223 RLQTNPLAYDKDGEMHYDI-------------------ISAFIKSIRGSDPDAALYWLAR 263

Query: 307 QGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                  P+   R L+  A + +G+  P+
Sbjct: 264 MIEGGEDPQFIARRLVISAAEDVGLANPN 292


>gi|239625342|ref|ZP_04668373.1| AAA ATPase central domain-containing protein [Clostridiales
           bacterium 1_7_47_FAA]
 gi|239519572|gb|EEQ59438.1| AAA ATPase central domain-containing protein [Clostridiales
           bacterium 1_7_47FAA]
          Length = 442

 Score =  155 bits (392), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 71/345 (20%), Positives = 125/345 (36%), Gaps = 51/345 (14%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M++  L   +    +   S LRP  L+ F GQ       K+  +  +   + +  ++F G
Sbjct: 1   MEQMSLFD-DREVYNPLASRLRPDDLDGFVGQEHLLGKGKILRQLIEQ--DKIPSMIFWG 57

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIH 115
           PPG+GKTTLA ++A +    F + S  V +   ++  ++   E+      + V+F+DEIH
Sbjct: 58  PPGVGKTTLAGIIAHKTHAEFINFSA-VTSGIKEIKEVMAQAENSRRMGIKTVVFVDEIH 116

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P +E   + L+    E PS       LSR        RV +L    Q+ 
Sbjct: 117 RFNKAQQDAFLPYVEKGSIILIGATTENPSFEINGALLSRC-------RVFVLQALTQEN 169

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
               ++              +G     + + D     IA  + G  R A   L       
Sbjct: 170 LSCLLKKALKSP--------KGLGYLDVDIDDHMLDMIAQFAAGDARTALNTLEMAVTNG 221

Query: 234 EVAHAKTITRE---IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
           E++  KT                  DK G +  ++                   ISA   
Sbjct: 222 EISADKTAVTMEVLKQCIGKKSFLYDKKGEEHYNI-------------------ISALHK 262

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
             R++  D    ++ +       P    R L+  A + +G+    
Sbjct: 263 SMRNSDPDAAVYWLARMLEAGEDPLYVARRLIRFASEDVGMADSQ 307


>gi|300767183|ref|ZP_07077095.1| replication-associated recombination protein A [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|308180402|ref|YP_003924530.1| replication-associated recombination protein A [Lactobacillus
           plantarum subsp. plantarum ST-III]
 gi|300495002|gb|EFK30158.1| replication-associated recombination protein A [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|308045893|gb|ADN98436.1| replication-associated recombination protein A [Lactobacillus
           plantarum subsp. plantarum ST-III]
          Length = 449

 Score =  155 bits (392), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 72/347 (20%), Positives = 125/347 (36%), Gaps = 58/347 (16%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M +E L + + S        +RP TL +F GQ       K+  +      + L  ++F G
Sbjct: 1   MRQESLFNPDKSSSSPLAYRVRPVTLADFKGQEHLLGPGKLLRQLI--AEDQLPSLIFWG 58

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHR 116
           PPG+GKTTLA+++A++   +F + S        I +  D A    +  ++ ++FIDEIHR
Sbjct: 59  PPGVGKTTLAEIIAQQTQSHFITFSAVTSGIKEIRQIMDEAEANRDFGEKTIVFIDEIHR 118

Query: 117 LSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGL-----LTNP 169
            +   ++   P +E   + L+    E PS       LSR  ++             L   
Sbjct: 119 FNKAQQDAFLPYVERGSITLIGATTENPSFEINAALLSRCKVLVLKALTPDALEAVLQGA 178

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           LQ+  G P                       + +  +    IA  + G  R+A   L   
Sbjct: 179 LQNPKGFPD--------------------LEITMQPDTLRLIAEFANGDARMALNTLEMA 218

Query: 230 RDFAEVAHAKTITREIADAAL---LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETIS 286
               +             + L     L  DK G +  ++                   IS
Sbjct: 219 VLNGDRDGKHVTITTAGLSQLINTKSLRYDKHGEEHYNI-------------------IS 259

Query: 287 AGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
           A     R++  D    ++++       P    R L+  A + +G+  
Sbjct: 260 ALHKSMRNSDVDAAIYWLMRMLAGGEDPLYIARRLIRFASEDIGLAD 306


>gi|319408738|emb|CBI82395.1| ATPase, AAA family [Bartonella schoenbuchensis R1]
          Length = 443

 Score =  155 bits (392), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 77/340 (22%), Positives = 120/340 (35%), Gaps = 59/340 (17%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPG 64
              +VS        +RPR+L E  GQ         L   IE+      +   ++F GPPG
Sbjct: 10  FDSHVSANRPLAERMRPRSLSEVVGQDHLIGTEGFLSRMIESG-----SFGSMIFWGPPG 64

Query: 65  LGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GKTT+A+++A E    F   S        + K  ++A        R +LF+DEIHR + 
Sbjct: 65  TGKTTIARLLALETNFAFEQVSAICTGVTELKKIFEVAQARFISGCRTLLFVDEIHRFNR 124

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             +++  P MED  + L+    E PS       LSR                        
Sbjct: 125 AQQDVFLPFMEDGTVVLVGATTENPSFELNSALLSR---------------------ARV 163

Query: 178 IRLNFYEIEDLKTIVQRGAKLT--GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
           +    ++ + L  +++R  ++    L + D A   +   S G  R A  L   +   A  
Sbjct: 164 LTFRLHDSKSLNMLLKRAEEVEGKSLPLDDHARDLLIRMSDGDARAALTLAEEIWRAA-- 221

Query: 236 AHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDA 295
                   E    A +   I +      D            G       ISA     R +
Sbjct: 222 ------RPEEIFNAKVLQEIIQRRAPIYD-----------KGQDSHYNLISALHKSVRGS 264

Query: 296 IEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
             D    Y+ +       P   GR L+ IA + +G+  P 
Sbjct: 265 DPDAALYYLARMFDAGEDPLYIGRRLVRIAVEDIGLADPQ 304


>gi|332535766|ref|ZP_08411508.1| putative polynucleotide enzyme with nucleotide triphosphate
           hydrolase domain [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332034834|gb|EGI71368.1| putative polynucleotide enzyme with nucleotide triphosphate
           hydrolase domain [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 447

 Score =  155 bits (392), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 70/328 (21%), Positives = 112/328 (34%), Gaps = 45/328 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP TL+E+ GQ    S  K   +A  A       ++  GPPG+GKTTLAQ++A 
Sbjct: 14  PLAARMRPTTLDEYIGQQHLLSGDKPLHQAIVA--GRCHSLILWGPPGVGKTTLAQIIAN 71

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAM 129
               +    S  V A   D+   +T           R ++F+DE+HR +   ++   P +
Sbjct: 72  HADASLIQMSA-VTAGVKDIRDSVTQARDNLESRGQRTLMFVDEVHRFNKSQQDAFLPHI 130

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ED     +    E PS       LSR  +    +                   + Y + +
Sbjct: 131 EDGTFIFVGATTENPSFALNNAILSRARVYVLKSLAD---------------TDLYTVIE 175

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
                        + + D A   +   S G  R    LL +  D     + +    E   
Sbjct: 176 RALKQDEQLSQKHITIADNAKKALCQASGGDARKVLNLLEQAVDLTTEKNGQYNVDEHV- 234

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
                          L     T +A+   GG    + ISA     R +  D    +  + 
Sbjct: 235 ---------------LSQVLPTHLAKYDKGGDEFYDLISAFHKSVRGSSPDGALYWYCRI 279

Query: 308 GFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                 P    R L+ IA + +G   P 
Sbjct: 280 LAGGGDPLYVARRLLAIATEDIGNADPR 307


>gi|304436891|ref|ZP_07396855.1| replication-associated recombination protein A [Selenomonas sp.
           oral taxon 149 str. 67H29BP]
 gi|304370090|gb|EFM23751.1| replication-associated recombination protein A [Selenomonas sp.
           oral taxon 149 str. 67H29BP]
          Length = 447

 Score =  155 bits (392), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 79/349 (22%), Positives = 132/349 (37%), Gaps = 58/349 (16%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M ++ GL +R   Q       +RPRTL++F GQ       K+     +  ++ +  ++F 
Sbjct: 3   MDEQGGLFARAAYQ--PLAERVRPRTLDDFVGQEHLLGQGKILRRLIE--SDRITSMIFW 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEI 114
           GPPG+GKTTLAQ++A      F + S  V +   ++  ++          +R V+F+DEI
Sbjct: 59  GPPGVGKTTLAQIIAARTKAEFITFSA-VTSGIKEIRTVMQEADRRRMYGERIVVFVDEI 117

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++   P +E   + L+    E PS       LSR                   
Sbjct: 118 HRFNKAQQDAFLPFVEKGSIVLIGATTENPSFEINNALLSRC------------------ 159

Query: 173 RFGIPIRLNFYEIEDLKTIV---QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR- 228
           R  +   L   +IE L        R      + ++D+    +A  + G  R A   L   
Sbjct: 160 RVFVLQGLTEADIEHLLRHAIATDRELSQMHIHLSDDGITAVAAFANGDARSALSTLEML 219

Query: 229 VRDFAEVAHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETIS 286
           V +  E      IT E     + R +   DK G +  +L                   IS
Sbjct: 220 VLNADERDGELYITEENLAQCITRKSLLYDKNGEEHYNL-------------------IS 260

Query: 287 AGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           A     R++  D    ++ +       P    R +   A + +G+  P 
Sbjct: 261 ALHKSMRNSDPDAAVYWLARMLEAGEDPLYVARRVTRFAAEDVGLADPR 309


>gi|310640104|ref|YP_003944862.1| aaa atpase central domain protein [Paenibacillus polymyxa SC2]
 gi|309245054|gb|ADO54621.1| AAA ATPase central domain protein [Paenibacillus polymyxa SC2]
          Length = 442

 Score =  155 bits (392), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 74/343 (21%), Positives = 129/343 (37%), Gaps = 50/343 (14%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M +  L      Q     + +RP+ LEEF GQ       KV  E  +   + +  ++F G
Sbjct: 1   MIQGSLFDDEYDQGRPLANRVRPQNLEEFVGQKHLLEPGKVLREMIE--NDQVSSMIFWG 58

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLT------NLEDRDVLFIDEIH 115
           PPG+GKTTLA+++A +    F   S  V +   D+ +++        L ++ +LFIDEIH
Sbjct: 59  PPGVGKTTLAKIIANQTQSKFIDFSA-VTSGIKDIRSVMKEAEGNRQLGEKTLLFIDEIH 117

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P +E   + L+    E PS       LSR  +         + +PL   
Sbjct: 118 RFNKAQQDAFLPYVEKGSIILIGATTENPSFEVNSALLSRSKV--------FVLHPLN-- 167

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR-VRDF 232
                  +  E+        +G     + + D     IA    G  R+A   L   V   
Sbjct: 168 -----HADILELLQKALANPKGFNNQSIEIEDGVLSAIAEYCDGDARVALNTLEMAVLHG 222

Query: 233 AEVAHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
            +   +  + +      L R +   DK G +  ++                   ISA   
Sbjct: 223 KKSDGSIVVNKNDLVQMLNRKSLLYDKNGEEHYNI-------------------ISALHK 263

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
             R++  +    ++ +       P    R L+  A + +G+  
Sbjct: 264 AMRNSDVNAAIYWLSRMLESGEDPLFIARRLVRFASEDIGLAD 306


>gi|303237626|ref|ZP_07324186.1| recombination factor protein RarA [Prevotella disiens FB035-09AN]
 gi|302482078|gb|EFL45113.1| recombination factor protein RarA [Prevotella disiens FB035-09AN]
          Length = 424

 Score =  155 bits (392), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 77/331 (23%), Positives = 127/331 (38%), Gaps = 52/331 (15%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +     +RPRTL+E+ GQ        V      +R   +   +  G PG+GKTTLAQ++A
Sbjct: 2   EPLAERMRPRTLDEYVGQSHLVGKGAVLRNMIDSRH--ISSFILWGSPGVGKTTLAQIIA 59

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPA 128
            +L   F + S  + +   D+ +++   +          +LFIDEIHR S   ++ L  A
Sbjct: 60  NKLETPFYTLSA-IASGVKDVRSVIEKAKSNRFFNAPSPILFIDEIHRFSKSQQDSLLGA 118

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           +E   + L+    E PS   ++  LSR  +    +        L D+    I  + Y  E
Sbjct: 119 VEKGVVTLIGATTENPSFEVIRPLLSRCQVYVLKSLDKKELLKLLDQ---AITKDIYLKE 175

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
               I +              +  +   S G  R    +L  V + +E  +   IT E  
Sbjct: 176 KDIKIKE--------------SEALLRYSGGDARKLLNILELVIEASEEDNKVIITNENV 221

Query: 247 DAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
              L +   A DK G    D+                   ISA +   R +  D    +M
Sbjct: 222 VNCLQQNPLAYDKDGEMHYDI-------------------ISAFIKSIRGSDPDATLYWM 262

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +       P+   R L+  A + +G+  P+
Sbjct: 263 ARMIEGGEDPQFIARRLVISASEDIGLANPN 293


>gi|313888444|ref|ZP_07822111.1| ATPase, AAA family [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845473|gb|EFR32867.1| ATPase, AAA family [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 433

 Score =  155 bits (392), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 89/347 (25%), Positives = 137/347 (39%), Gaps = 51/347 (14%)

Query: 2   MDREGL-LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD   L + +N+  +      +RPRTLEEF GQ       K      K  ++ L  VLF 
Sbjct: 1   MDLFELSMQKNLETKAPLADRMRPRTLEEFFGQDHIIGEGKYLSRLIK--SDRLTSVLFY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDE 113
           GPPG+GKTTLA+++AR    NF   S  V +   +L  +L   ED         ++FIDE
Sbjct: 59  GPPGVGKTTLAEIIARTTNKNFVKLSA-VTSNLKELREVLAKAEDSMKFDNVSTIVFIDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++ L P +E   + L+    E P     +  LSR  +I          +PL+
Sbjct: 118 IHRFNKSQQDALLPFVERGVISLIGATTENPYFEVNRALLSRMQIINL--------HPLE 169

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR-RVR 230
           D+    +       +      +RG     + +T+EA   +     G  R     L   V 
Sbjct: 170 DKDLEDMMYKALSDK------ERGLGKKNIVITEEAKHILIKNPNGDGRYLLNSLEIAVL 223

Query: 231 DFAEVAHAKTITREIADAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAG 288
              +V     I R++ + +LL      DK   +  D                   TISA 
Sbjct: 224 STDQVDGKILIDRDVIENSLLIKNVRYDKNNNEHYD-------------------TISAF 264

Query: 289 LSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +   R +  D    Y+ +        +   R L+  A + +G   P 
Sbjct: 265 IKSMRGSDPDAALIYLAKMLEGGEDIKFIARRLIIFASEDVGNANPE 311


>gi|16273484|ref|NP_439735.1| recombination factor protein RarA [Haemophilus influenzae Rd KW20]
 gi|1175611|sp|P45262|RARA_HAEIN RecName: Full=Replication-associated recombination protein A
 gi|1574435|gb|AAC23238.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
          Length = 446

 Score =  155 bits (392), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 69/342 (20%), Positives = 122/342 (35%), Gaps = 53/342 (15%)

Query: 8   LSRNVSQED--ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            + + ++ D     + +RP +LE++ GQ       K   +A +A    +  ++F GPPG 
Sbjct: 4   FNFDFAENDFGPLAAKMRPTSLEQYFGQSHLIGEGKPLRKAIQAGH--IYSMIFWGPPGT 61

Query: 66  GKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GKTTLA+++A+ +       S        I +A D A      + + +LF+DE+HR +  
Sbjct: 62  GKTTLAEIIAQRINAEVERISAVTSGIKEIREAIDRAKQNRLADRKTILFVDEVHRFNKS 121

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++   P +ED  +  +    E PS       LSR  +    +        +        
Sbjct: 122 QQDAFLPHIEDGTVIFIGATTENPSFELNNALLSRARVYVLKSLTTAEIEQV-------- 173

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
                 ++      +RG     L + +     +A    G  R+A   L  + D A+    
Sbjct: 174 ------LQQAVEDPKRGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMADETEN 227

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMI-----ARNFGGGPVGIETISAGLSEPR 293
                                  ++D   L  +     AR    G    + ISA     R
Sbjct: 228 GK---------------------KIDRTLLKEVLGERQARFDKQGDRFYDLISALHKSVR 266

Query: 294 DAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +  D    +  +       P    R L+ IA + +G   P 
Sbjct: 267 GSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPR 308


>gi|229845598|ref|ZP_04465724.1| recombination factor protein RarA [Haemophilus influenzae 6P18H1]
 gi|229811465|gb|EEP47168.1| recombination factor protein RarA [Haemophilus influenzae 6P18H1]
          Length = 446

 Score =  155 bits (391), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 71/331 (21%), Positives = 119/331 (35%), Gaps = 51/331 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP +LE++ GQ       K   +A +A    +  ++  GPPG GKTTLA+++A+
Sbjct: 15  PLAAKMRPTSLEQYFGQSHLIGEGKPLRKAIQAGH--IHSMILWGPPGTGKTTLAEIIAQ 72

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            +       S        I +A D A      + + +LF+DE+HR +   ++   P +ED
Sbjct: 73  RINAEVERISAVTSGIKEIREAIDRAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIED 132

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             +  +    E PS       LSR        RV +L +         ++    + E   
Sbjct: 133 GTVIFIGATTENPSFELNNALLSR-------ARVYVLKSLTTAEIEQVLQQAVEDPE--- 182

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
               RG     L + +     +A    G  R+A   L  + D A+               
Sbjct: 183 ----RGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMADETENGK--------- 229

Query: 250 LLRLAIDKMGFDQLDLRYLTMI-----ARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
                       ++D   L  +     AR    G    + ISA     R +  D    + 
Sbjct: 230 ------------KIDRTLLKEVLGERQARFDKQGDRFYDLISALHKSVRGSAPDAALYWY 277

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +       P    R L+ IA + +G   P 
Sbjct: 278 ARILTAGGDPLYVARRLLAIASEDVGNADPR 308


>gi|159899639|ref|YP_001545886.1| recombination factor protein RarA [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159892678|gb|ABX05758.1| AAA ATPase central domain protein [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 459

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 79/342 (23%), Positives = 132/342 (38%), Gaps = 44/342 (12%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD       + S +    + +RPRTL E+ GQ +     ++     +   + L  ++  G
Sbjct: 1   MDLFSY-QASQSNDAPLAARMRPRTLAEYEGQTKIVGEGRLLRRLIER--DQLISLILWG 57

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEI 114
           PPG GKTTLA+++A     +F   S  V A   +L  ++            R VLFIDEI
Sbjct: 58  PPGTGKTTLARIIAGASSAHFEPLSA-VSAGVAELRKVVKEANERRGMYGKRTVLFIDEI 116

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++ + PA+ED  + L+    E PS    +  LSR  +I          + +  
Sbjct: 117 HRWNKAQQDAVLPAVEDGTVTLIGATTENPSFEINRALLSRCRVIVLEALEDAAIDKI-- 174

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
                       IE      +RG     + ++ EA   +   + G  R A          
Sbjct: 175 ------------IERALNDNERGLGKQQVQLSPEARDMLIHLASGDARAALT-------- 214

Query: 233 AEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEP 292
           A  A A T   E     L+ L      + + ++ Y          G +  + ISA     
Sbjct: 215 ALEAAALTQVPEPNGQRLIDLEAIVEAYQRRNVAYDKT-------GELHYDAISALHKSV 267

Query: 293 RDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           RD+  D    ++ +       P    R ++ +A + +G+  P
Sbjct: 268 RDSDPDGGLYWLARMLEGGEDPLYVARRVIRMAVEDIGLADP 309


>gi|73748992|ref|YP_308231.1| recombination factor protein RarA [Dehalococcoides sp. CBDB1]
 gi|73660708|emb|CAI83315.1| ATPase, AAA family [Dehalococcoides sp. CBDB1]
          Length = 457

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 77/349 (22%), Positives = 133/349 (38%), Gaps = 53/349 (15%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           +MD     +  + +  + ++  +RP TL EF GQ       +    + +  ++ +  ++F
Sbjct: 5   IMDLFDAGAEKLKKSQSPLAARMRPETLAEFVGQSHLIGEGRALRLSLE--SDKIPSLIF 62

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFID 112
            GPPG GKTTLA ++A  L  +F + S  V A   DL  ++    +R        +LFID
Sbjct: 63  WGPPGSGKTTLANIIAHSLDAHFSALSA-VSAGVADLRRVVEEARERLKLYHRRTILFID 121

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           EIHR +   ++ + P +ED  + L+    E PS       LSR  +    +      + +
Sbjct: 122 EIHRFNKSQQDAILPYVEDGTVVLIGATTENPSFEVNSALLSRAQVYVLNSLSEKEISVI 181

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
             R           +E      + G       + +EA   I+  ++G  RIA  +L    
Sbjct: 182 LKR----------SLEG-----ENGLGNYHARLLEEAEKHISSFAQGDARIALNILELAV 226

Query: 231 DFAEVAHAK---TITREIADAALLRL-AIDKMGFDQLDLRYLTMIARNFGGGPVGIETIS 286
                           ++ DAA  +    DK G    DL                   IS
Sbjct: 227 MTTLPDKDGWRVVGLPQVEDAAQKKSLRYDKSGEQHYDL-------------------IS 267

Query: 287 AGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           A     R +  D    ++ +   +   P    R ++  A + +G+  P 
Sbjct: 268 ALHKTMRGSDPDAAIYWLGRMLEVGEDPLYIARRVIRFATEDVGLADPQ 316


>gi|251792120|ref|YP_003006840.1| recombination factor protein RarA [Aggregatibacter aphrophilus
           NJ8700]
 gi|247533507|gb|ACS96753.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Aggregatibacter
           aphrophilus NJ8700]
          Length = 446

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 74/343 (21%), Positives = 124/343 (36%), Gaps = 55/343 (16%)

Query: 8   LSRNVSQED--ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            S + ++ D     + +RP TL ++ GQ       K   +A +A    +  ++F GPPG 
Sbjct: 4   FSFDFNENDFRPLAARMRPTTLAQYCGQSHLLGEGKPLRKAIEA--GYVHSMIFWGPPGT 61

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSI 119
           GKTTLA+++A+ +       S  V +   ++   +   +       R +LF+DE+HR + 
Sbjct: 62  GKTTLAEIIAQRINAEVERISA-VTSGIKEIRKAIEKAKQNKLAGLRTILFVDEVHRFNK 120

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             ++   P +ED  +  +    E PS       LSR        RV +L           
Sbjct: 121 SQQDAFLPHIEDGTIIFIGATTENPSFELNNALLSR-------ARVYILKPLSTQEIERV 173

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
           ++    + E+       G     L + +     +A    G  R+A   L  + D A  + 
Sbjct: 174 LQQAIDDQEN-------GLGKVRLDLQENLLSLLAEYVNGDARLALNCLEMMVDMAAESK 226

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMI-----ARNFGGGPVGIETISAGLSEP 292
              I                     LD   LT +     AR    G    + ISA     
Sbjct: 227 NGKI---------------------LDRTLLTEVLGERQARFDKQGDRFYDFISALHKSI 265

Query: 293 RDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           R +  D    +  +       P    R L+ IA + +G   P 
Sbjct: 266 RGSAPDAALYWYARIITAGGDPLYVARRLLAIASEDVGNADPR 308


>gi|304439985|ref|ZP_07399878.1| AAA family ATPase [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371477|gb|EFM25090.1| AAA family ATPase [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 434

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 76/346 (21%), Positives = 128/346 (36%), Gaps = 52/346 (15%)

Query: 2   MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD   L +   ++ +A +   +RP+ L+EF GQ       K      K  +  +  ++F 
Sbjct: 1   MDLFDLAAEKKNKSNAPLAERMRPKNLDEFVGQSHIVGEGKYLNRLLK--SGRVFSMIFY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDE 113
           GPPG+GKTTLA++ A   G  F   S  + +   +L  LL   ED       + +LFIDE
Sbjct: 59  GPPGVGKTTLAEIFAGLSGYKFVRISA-ITSGVKELRELLKTAEDDLKFNNVKTILFIDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++ L P +E   + L+    E P        LSR  +I           PL+
Sbjct: 118 IHRFNKSQQDALLPFVEKGLVTLIGATTENPYFEVNSALLSRCQIINL--------EPLK 169

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
           +   + +       E+       G K   + ++++A   + + +    R     L     
Sbjct: 170 EEDLLLLIERALSEEN-------GLKYLNVRLSEDAKKTLILLAGNDARSLLNNLEIAAL 222

Query: 232 FAEVAHAKTITREIADA---ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAG 288
                + + I  +          ++  DK G    D                    ISA 
Sbjct: 223 STPGRNGEIIIDKTDVENSVMKKKVLYDKNGNSHYD-------------------NISAF 263

Query: 289 LSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           +   R    D    Y+ Q       P+   R ++  A + +G   P
Sbjct: 264 IKSMRGTDPDAAVFYLAQMLNSGEDPKFIARRMIIFASEDIGCANP 309


>gi|147669758|ref|YP_001214576.1| recombination factor protein RarA [Dehalococcoides sp. BAV1]
 gi|146270706|gb|ABQ17698.1| AAA ATPase, central domain protein [Dehalococcoides sp. BAV1]
          Length = 457

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 77/349 (22%), Positives = 132/349 (37%), Gaps = 53/349 (15%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           +MD     +  + +  + ++  +RP TL EF GQ       +    + +  ++ +  ++F
Sbjct: 5   IMDLFDAGAEKLKKSQSPLAARMRPETLAEFVGQSHLIGEGRALRLSLE--SDKIPSLIF 62

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFID 112
            GPPG GKTTLA ++A  L  +F + S  V A   DL  ++    +R        +LFID
Sbjct: 63  WGPPGSGKTTLANIIAHSLDAHFSALSA-VSAGVADLRRVVEEARERLKLYHRRTILFID 121

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           EIHR +   ++ + P +ED  + L+    E PS       LSR  +    +      + +
Sbjct: 122 EIHRFNKSQQDAILPYVEDGTVVLIGATTENPSFEVNSALLSRVQVYVLNSLSEKELSVI 181

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
             R           +E      + G       + +EA   I+  ++G  RIA  +L    
Sbjct: 182 LKR----------SLEG-----ENGLGNYHARLLEEAEKHISSFAQGDARIALNILELAV 226

Query: 231 DFAEVAHAK---TITREIADAALLRL-AIDKMGFDQLDLRYLTMIARNFGGGPVGIETIS 286
                           ++ DAA  +    DK G    DL                   IS
Sbjct: 227 MTTLPDKDGWRVVGLPQVEDAAQKKSLRYDKSGEQHYDL-------------------IS 267

Query: 287 AGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           A     R +  D    ++ +       P    R ++  A + +G+  P 
Sbjct: 268 ALHKTMRGSDPDAAIYWLGRMLEAGEDPLYIARRVIRFATEDVGLADPQ 316


>gi|94499677|ref|ZP_01306214.1| hypothetical protein RED65_01550 [Oceanobacter sp. RED65]
 gi|94428431|gb|EAT13404.1| hypothetical protein RED65_01550 [Oceanobacter sp. RED65]
          Length = 443

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 74/327 (22%), Positives = 123/327 (37%), Gaps = 45/327 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              S  RP+TL+++ GQ    ++ K   +  +  +  L  ++F GPPG+GKTTLA ++A 
Sbjct: 14  PLASRTRPQTLDDYAGQKHLLADGKPLRKVIE--SGRLHSMIFWGPPGVGKTTLAMILAN 71

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL-----EDRD-VLFIDEIHRLSIIVEEILYPAME 130
            +   F S S  V+    ++ A +        +DR  +LF+DE+HR +   ++   P +E
Sbjct: 72  YVNAQFISVSA-VMDGVKEIRAAVDKARMAQQQDRPSLLFVDEVHRFNKSQQDAFLPYVE 130

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           D     +    E PS       LSR        RV  L +   D     +       + L
Sbjct: 131 DGTFIFIGATTENPSFELNSALLSR-------ARVYKLRSLEHDDIRQLLEHAVRTDQQL 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
            +I        GL   + A   +   + G  R A  LL       +   +  IT  +   
Sbjct: 184 NSI--------GLQFENGALDRLVRVADGDARTALNLLELAAGLCQAESSNVITENVVAE 235

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
                                 + R   GG V  E ISA     R +  D    + ++  
Sbjct: 236 ISQ-----------------ESLRRFDKGGDVFYEQISALHKAVRGSSPDGAMYWFVRML 278

Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIPH 333
                P+   R ++ +A + +G   P 
Sbjct: 279 DGGCDPKYIARRVVRMASEDIGNADPR 305


>gi|191167587|ref|ZP_03029398.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           B7A]
 gi|190902348|gb|EDV62086.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           B7A]
          Length = 447

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 73/331 (22%), Positives = 116/331 (35%), Gaps = 50/331 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP  L ++ GQ    +  K    A +A    L  ++  GPPG GKTTLA+V+AR
Sbjct: 15  PLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIAR 72

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
               +    S        I +A + A    N   R +LF+DE+HR +   ++   P +ED
Sbjct: 73  YANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED 132

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATT-----RVGLLTNPLQDRFGIPIRLNFYE 184
             +  +    E PS       LSR  +    +        +LT  ++D+           
Sbjct: 133 GTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDK----------- 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
                    RG     + + DE    IA    G  R A   L  + D AEV  +     +
Sbjct: 182 --------TRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVNDSGKRVLK 233

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
                 +         ++ D  Y               + ISA     R +  D    + 
Sbjct: 234 PELLTEIAGERSARFDNKGDRFY---------------DLISALHKSVRGSAPDAALYWY 278

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +       P    R  + IA + +G   P 
Sbjct: 279 ARIITAGGDPLYVARRCLAIASEDVGNADPR 309


>gi|57233987|ref|YP_182021.1| recombination factor protein RarA [Dehalococcoides ethenogenes 195]
 gi|57224435|gb|AAW39492.1| ATPase, AAA family [Dehalococcoides ethenogenes 195]
          Length = 457

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 81/349 (23%), Positives = 132/349 (37%), Gaps = 53/349 (15%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           +MD     +  + +  + ++  +RP  L EF GQ       +    A +   + +  ++F
Sbjct: 5   IMDLFDAGAEKLKKSQSPLAARMRPEGLSEFVGQDHLIGEGRALRLAIE--GDKIPSLIF 62

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFID 112
            GPPG GKTTLA ++AR L  +F + S  V A   DL  ++    +R        +LFID
Sbjct: 63  WGPPGSGKTTLANIIARRLDAHFSALSA-VSAGVADLRRVVEEARERLKFERRRTILFID 121

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           EIHR +   ++ + P +ED  + L+    E PS       LSR  +         + NPL
Sbjct: 122 EIHRFNKSQQDAILPYVEDGTVVLIGATTENPSFEVNSALLSRAQV--------YVLNPL 173

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
            ++    I     E          G       + +EA   I+  ++G  RIA  +L    
Sbjct: 174 SEKEISLILKRSLEDPS-------GLGNYHARLLEEAEKHISSFAQGDARIALNILELAV 226

Query: 231 DFAEVAHAK---TITREIADAALLRL-AIDKMGFDQLDLRYLTMIARNFGGGPVGIETIS 286
                           ++ DAA  +    DK G    DL                   IS
Sbjct: 227 MTTPPDKDGWRVVGLPQVEDAAQKKSLRYDKSGEQHYDL-------------------IS 267

Query: 287 AGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           A     R +  D    ++ +       P    R ++  A + +G+  P 
Sbjct: 268 ALHKTMRGSDPDAAVYWLGRMLEAGEDPLYIARRVIRFATEDVGLADPQ 316


>gi|320095686|ref|ZP_08027342.1| replication-associated recombination protein A [Actinomyces sp.
           oral taxon 178 str. F0338]
 gi|319977407|gb|EFW09094.1| replication-associated recombination protein A [Actinomyces sp.
           oral taxon 178 str. F0338]
          Length = 456

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 68/339 (20%), Positives = 118/339 (34%), Gaps = 50/339 (14%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            L      +       +RP +L+E  GQ       K      +A  +    ++F GPPG+
Sbjct: 7   SLFDEAADEARPLADRMRPASLDEVVGQSHQIGPGKALRSMIEA--DRTPSMIFWGPPGV 64

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSI 119
           GKTTLA+V+AR    +F   S  V +   ++  ++           R ++F+DEIHR + 
Sbjct: 65  GKTTLARVIARRTCASFIDFSA-VTSGIKEIREVMRQADAQASTGRRTIVFVDEIHRFNK 123

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             ++   P +E   + L+    E PS       LSR  +             L  R    
Sbjct: 124 AQQDAFLPFVEKGSIILIGATTENPSFEVNSALLSRCKVFVLNALAEDDITALLRR---- 179

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV-RDFAEVA 236
                           RG     + + D+    IA+ + G  R+A   L     +  E  
Sbjct: 180 -----------ALADPRGFGEQDVRIEDDLLRAIAVFANGDARVALSTLEMAFLNGDEEG 228

Query: 237 HAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRD 294
               ++ E  +    R +   DK G +  ++                   ISA     R+
Sbjct: 229 GVTRVSAETVEQCTSRRSLLYDKDGEEHYNI-------------------ISALHKSMRN 269

Query: 295 AIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
           +  D    ++ +       P    R +   A + +G+  
Sbjct: 270 SDPDAAVYWLARMLEGGEDPLYVARRITRFASEDVGLAD 308


>gi|229847091|ref|ZP_04467196.1| recombination factor protein RarA [Haemophilus influenzae 7P49H1]
 gi|229809920|gb|EEP45641.1| recombination factor protein RarA [Haemophilus influenzae 7P49H1]
          Length = 446

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 71/331 (21%), Positives = 119/331 (35%), Gaps = 51/331 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP +LE++ GQ       K   +A +A    +  ++  GPPG GKTTLA+++A+
Sbjct: 15  PLAAKMRPTSLEQYFGQSHLIGEGKPLRKAIQAGH--IHSMILWGPPGTGKTTLAEIIAQ 72

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            +       S        I +A D A      + + +LF+DE+HR +   ++   P +ED
Sbjct: 73  RINAEVERISAVTSGIKEIREAIDRAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIED 132

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             +  +    E PS       LSR        RV +L +         ++    + E   
Sbjct: 133 GSVIFIGATTENPSFELNNALLSR-------ARVYVLKSLTTAEIEQVLQQAVEDPE--- 182

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
               RG     L + +     +A    G  R+A   L  + D A+               
Sbjct: 183 ----RGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMADEMENGK--------- 229

Query: 250 LLRLAIDKMGFDQLDLRYLTMI-----ARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
                       ++D   L  +     AR    G    + ISA     R +  D    + 
Sbjct: 230 ------------KIDRTLLKEVLGERQARFDKQGDRFYDLISALHKSVRGSAPDAALYWY 277

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +       P    R L+ IA + +G   P 
Sbjct: 278 ARILTAGGDPLYVARRLLAIASEDVGNADPR 308


>gi|167761579|ref|ZP_02433706.1| hypothetical protein CLOSCI_03990 [Clostridium scindens ATCC 35704]
 gi|167660722|gb|EDS04852.1| hypothetical protein CLOSCI_03990 [Clostridium scindens ATCC 35704]
          Length = 437

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 81/350 (23%), Positives = 134/350 (38%), Gaps = 61/350 (17%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M++  L   +        S LRP +LE+F GQ       ++  +  +   + +  ++F G
Sbjct: 1   MEQMSLFD-DRQASAPLASRLRPSSLEDFVGQEHLLGKGRMLRQLIER--DQISSMIFWG 57

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIH 115
           PPG+GKTTLA ++A     +F + S  V +   ++  ++   E+      R VLF+DEIH
Sbjct: 58  PPGVGKTTLASIIAGRTKADFINFSA-VTSGIKEIKEVMRQAEESRCMGIRTVLFVDEIH 116

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAA-----TTRVGLLTN 168
           R +   ++   P +E   + L+    E PS       LSR  +        T  V LLTN
Sbjct: 117 RFNKAQQDAFLPFVEKGSIVLIGATTENPSFEVNAALLSRCRVFVLKALEETDLVKLLTN 176

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            L    G+  +      + LK I                    A  + G  R A  +L  
Sbjct: 177 ALNSPAGLKDQNVRITQQQLKAI--------------------AAFANGDARTALNILEM 216

Query: 229 VRDFAEVAHAK-TITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETI 285
                E+     T+T E  +  + + +   DK G +  +L                   I
Sbjct: 217 AVINGEITADGMTVTNEGLEQCISKKSLLYDKNGEEHYNL-------------------I 257

Query: 286 SAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           SA     R++  D    +M +       P    R L+  A + +G+   H
Sbjct: 258 SALHKSMRNSDPDAAIYWMCRMLEGGENPLYIARRLIRFASEDIGMADSH 307


>gi|145637468|ref|ZP_01793126.1| predicted ATPase [Haemophilus influenzae PittHH]
 gi|145269274|gb|EDK09219.1| predicted ATPase [Haemophilus influenzae PittHH]
          Length = 446

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 71/331 (21%), Positives = 119/331 (35%), Gaps = 51/331 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP +LE++ GQ       K   +A +A    +  ++  GPPG GKTTLA+++A+
Sbjct: 15  PLAAKMRPTSLEQYFGQSHLIGEGKPLRKAIQAGH--IHSMILWGPPGTGKTTLAEIIAQ 72

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            +       S        I +A D A      + + +LF+DE+HR +   ++   P +ED
Sbjct: 73  RINAEVERISAVTSGIKEIREAIDRAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIED 132

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             +  +    E PS       LSR        RV +L +         ++    + E   
Sbjct: 133 GSVIFIGATTENPSFELNNALLSR-------ARVYVLKSLTTAEIEQVLQQAVEDPE--- 182

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
               RG     L + +     +A    G  R+A   L  + D A+               
Sbjct: 183 ----RGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMADETENGK--------- 229

Query: 250 LLRLAIDKMGFDQLDLRYLTMI-----ARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
                       ++D   L  +     AR    G    + ISA     R +  D    + 
Sbjct: 230 ------------KIDRTLLKEVLGERQARFDKQGDRFYDLISALHKSVRGSAPDAALYWY 277

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +       P    R L+ IA + +G   P 
Sbjct: 278 ARILTAGGDPLYVARRLLAIASEDVGNADPR 308


>gi|68249823|ref|YP_248935.1| recombination factor protein RarA [Haemophilus influenzae 86-028NP]
 gi|68058022|gb|AAX88275.1| predicted ATPase related to the helicase subunit of the holliday
           junction resolvase [Haemophilus influenzae 86-028NP]
          Length = 446

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 71/331 (21%), Positives = 118/331 (35%), Gaps = 51/331 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP  LE++ GQ       K   +A +A    +  ++  GPPG GKTTLA+++A+
Sbjct: 15  PLAAKMRPTNLEQYFGQSHLIGEGKPLRKAIQAGH--IHSMILWGPPGTGKTTLAEIIAQ 72

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            +       S        I +A D A      + + +LF+DE+HR +   ++   P +ED
Sbjct: 73  RINAEVERISAVTSGIKEIREAIDRAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIED 132

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             +  +    E PS       LSR        RV +L +         ++    + E   
Sbjct: 133 GTVIFIGATTENPSFELNNALLSR-------ARVYVLKSLTTAEIEQVLQQAVEDPE--- 182

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
               RG     L + +     +A    G  R+A   L  + D A+               
Sbjct: 183 ----RGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMADEMENGK--------- 229

Query: 250 LLRLAIDKMGFDQLDLRYLTMI-----ARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
                       ++D   L  +     AR    G    + ISA     R +  D    + 
Sbjct: 230 ------------KIDRTLLKEVLGERQARFDKQGDRFYDLISALHKSVRGSAPDAALYWY 277

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +       P    R L+ IA + +G   P 
Sbjct: 278 ARILTAGGDPLYVARRLLAIASEDVGNADPR 308


>gi|297565423|ref|YP_003684395.1| AAA ATPase central domain-containing protein [Meiothermus silvanus
           DSM 9946]
 gi|296849872|gb|ADH62887.1| AAA ATPase central domain protein [Meiothermus silvanus DSM 9946]
          Length = 425

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 77/323 (23%), Positives = 116/323 (35%), Gaps = 56/323 (17%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
             LRP+TLEE  GQ       K      +     L  ++  GPPG GKTTLA+++A  +G
Sbjct: 12  ERLRPKTLEEVVGQDHLTGPGKPLRRMLEV--GRLQSLILWGPPGSGKTTLARLLAEGVG 69

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
               + S  V A   ++   +    +    VLF+DEIHR +   ++ L P +E   L L+
Sbjct: 70  QEMLALSA-VNAGVREIKEAVARAREVGGLVLFLDEIHRFNKSQQDALLPHVESGLLTLI 128

Query: 138 --VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
               E PS        SR  +                           E E+++ +++R 
Sbjct: 129 GATTENPSFEVNPALRSRARVYVL---------------------RPLEPEEIRQLLERA 167

Query: 196 A----KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
                 L G+    +A   +A  S G  R A   L      A       IT E     L 
Sbjct: 168 LQHPEGLLGVEAEPKALELLAQASMGDVRRALSALELAATLA-----GKITLESVKEGL- 221

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ--GF 309
                 +G D               GG    + ISA     R    D    Y+ +   G 
Sbjct: 222 --GAGTLGLD--------------KGGEHFYDLISALHKSVRGNHVDAALYYLARMLEGG 265

Query: 310 IQRTPRGRLLMPIAWQHLGIDIP 332
           +      R L+ +A + +G+  P
Sbjct: 266 VDPLYLARRLVRMAVEDIGLADP 288


>gi|206895474|ref|YP_002247556.1| AAA ATPase, central region [Coprothermobacter proteolyticus DSM
           5265]
 gi|206738091|gb|ACI17169.1| AAA ATPase, central region [Coprothermobacter proteolyticus DSM
           5265]
          Length = 459

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 75/331 (22%), Positives = 126/331 (38%), Gaps = 50/331 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RPRTL+E  GQ +A     +  +  +   + L  ++  GPPG+GKT++A V+A 
Sbjct: 19  PLAERMRPRTLDEIVGQDKAFGKGTLLRKLIEE--DKLTSLVLWGPPGVGKTSIAMVIAN 76

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLT------NLEDRDVLFIDEIHRLSIIVEEILYPAME 130
                F   S  V +   ++  +L       N+  R V+F+DEIH  +   ++   P +E
Sbjct: 77  TTKARFLRFSA-VTSGIKEIKEVLEDAEVQFNMGRRTVIFVDEIHHFNKTQQDAFLPYVE 135

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
              + L+    E PS   +   LSR  ++           PL+      I       +  
Sbjct: 136 KGAVVLICATTENPSFEIISPLLSRSKVVVL--------EPLEAEDIKTILYRALADK-- 185

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR--DFAEVAHAKTITREIA 246
               +RG     + +TDE    IA+ S G  RIA   L              + I+ E+ 
Sbjct: 186 ----ERGLGNERVVITDEQLMRIAVYSDGDARIALNTLEMAVFGTDPNSEGIRVISDEVI 241

Query: 247 DAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
             AL +     DK G +  +L                   ISA     R++  D    ++
Sbjct: 242 SEALQKKTLLYDKAGEEHYNL-------------------ISALHKSMRNSDPDAALYWL 282

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +       P    R ++  A + +G+  P 
Sbjct: 283 ARMLEAGEDPLYVARRIVRFASEDVGMADPQ 313


>gi|170769294|ref|ZP_02903747.1| putative DNA recombination-associated ATPase RarA [Escherichia
           albertii TW07627]
 gi|170121946|gb|EDS90877.1| putative DNA recombination-associated ATPase RarA [Escherichia
           albertii TW07627]
          Length = 447

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 73/331 (22%), Positives = 116/331 (35%), Gaps = 50/331 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP  L ++ GQ    +  K    A +A    L  ++  GPPG GKTTLA+V+AR
Sbjct: 15  PLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIAR 72

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
               +    S        I +A + A    N   R +LF+DE+HR +   ++   P +ED
Sbjct: 73  YANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED 132

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATT-----RVGLLTNPLQDRFGIPIRLNFYE 184
             +  +    E PS       LSR  +    +        +LT  ++D+           
Sbjct: 133 GTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDK----------- 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
                    RG     + + DE    IA    G  R A   L  + D AEV  +     +
Sbjct: 182 --------TRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDGSGKRVLK 233

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
                 +         ++ D  Y               + ISA     R +  D    + 
Sbjct: 234 PELLTEIAGERSARFDNKGDRFY---------------DLISALHKSVRGSAPDAALYWY 278

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +       P    R  + IA + +G   P 
Sbjct: 279 ARIITAGGDPLYVARRCLAIASEDVGNADPR 309


>gi|229918427|ref|YP_002887073.1| ATPase AAA [Exiguobacterium sp. AT1b]
 gi|229469856|gb|ACQ71628.1| AAA ATPase central domain protein [Exiguobacterium sp. AT1b]
          Length = 438

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 81/331 (24%), Positives = 132/331 (39%), Gaps = 51/331 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP TL++  GQ       K+   A +A  + L  ++  GPPG GKTTLA+V++ 
Sbjct: 12  PLANRMRPETLDDVIGQRHIIGEGKLLRRAIEA--DRLGTIILYGPPGTGKTTLARVISN 69

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAM 129
                F   +  V AK  +L  ++   E       +R +LF+DEIHR + + ++ L PA+
Sbjct: 70  YTKATFVQLNA-VTAKLDELRNVIREAESRYDYEDERTILFLDEIHRFNKLQQDALLPAL 128

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E  +L L+    E PS       LSR T       V  L  P  +     +    ++   
Sbjct: 129 ESGKLVLIGATTENPSFEVNAALLSRAT-------VFRLEPPRAEELRTVLERALHD--- 178

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR-RVRDFAEVAHAKTITREIA 246
                 RG     + + + AA      + G  R+    L   V    EV     IT E+A
Sbjct: 179 -----SRGLGNYPVKMDEAAADHYIKMADGDYRVLLNALELAVLTTPEVEGQIHITLEVA 233

Query: 247 DAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           + ++ + +   DK G    D+                   ISA +   R +  D    ++
Sbjct: 234 EESIQQKSIKYDKTGDRHYDV-------------------ISAFIKSIRGSDPDAALYWL 274

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                   +PR   R L   A + +G+  P+
Sbjct: 275 AVMIEAGESPRFIMRRLYVHAAEDIGMSDPN 305


>gi|146297065|ref|YP_001180836.1| recombination factor protein RarA [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410641|gb|ABP67645.1| Recombination protein MgsA [Caldicellulosiruptor saccharolyticus
           DSM 8903]
          Length = 444

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 79/343 (23%), Positives = 132/343 (38%), Gaps = 44/343 (12%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD    L     ++++ ++  LRP+ LEE  GQ       K      K   + L  ++  
Sbjct: 1   MDFFQYLGEKRLKKESPLAYKLRPKRLEEIVGQEHILGEGKPLYNLIK--NDKLTSIILY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDE 113
           GPPG GKTT+A V+A+     F+S +   IA   D+  ++   +        R +LFIDE
Sbjct: 59  GPPGTGKTTIAHVIAQVTNNIFKSINA-TIAGINDIKKIIEEAKLEFSQGGRRTILFIDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR + + ++ L P++E+  + L+    E P     K  +SR  +            PL+
Sbjct: 118 IHRFNKLQQDALLPSVEEGIIVLIGATTENPFYEVNKALVSRSLVFELF--------PLK 169

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
           +   I I       +      + G     + V + A   IA  S G  R+A  +L     
Sbjct: 170 EEDIIKIINRAISDK------ENGLGEMNIKVEENAKRLIARLSNGDARVALNILEACVY 223

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
             +     TI         L      +     D+ Y               +TISA +  
Sbjct: 224 STKPLEDGTIMITQDTVGNLSNRKISLYDATGDMHY---------------DTISAFIKS 268

Query: 292 PRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
            R +  D    Y+ +        +   R L+ +A + +G+  P
Sbjct: 269 VRGSDPDAALFYLAKMLDSGEDIKFIARRLIILAAEDIGLADP 311


>gi|28378253|ref|NP_785145.1| recombination factor protein RarA [Lactobacillus plantarum WCFS1]
 gi|28271088|emb|CAD63993.1| chromosome segregation helicase (putative) [Lactobacillus plantarum
           WCFS1]
          Length = 458

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 72/347 (20%), Positives = 125/347 (36%), Gaps = 58/347 (16%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M +E L + + S        +RP TL +F GQ       K+  +      + L  ++F G
Sbjct: 1   MRQESLFNPDKSSSSPLAYRVRPVTLADFKGQEHLLGPGKLLRQLI--AEDQLPSLIFWG 58

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHR 116
           PPG+GKTTLA+++A++   +F + S        I +  D A    +  ++ ++FIDEIHR
Sbjct: 59  PPGVGKTTLAEIIAQQTQSHFITFSAVTSGIKEIRQIMDEAEANRDFGEKTIVFIDEIHR 118

Query: 117 LSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGL-----LTNP 169
            +   ++   P +E   + L+    E PS       LSR  ++             L   
Sbjct: 119 FNKAQQDAFLPYVERGSITLIGATTENPSFEINAALLSRCKVLVLKALTPDALEAVLQGA 178

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           LQ+  G P                       + +  +    IA  + G  R+A   L   
Sbjct: 179 LQNPKGFPD--------------------LEITMQPDTLRLIAEFANGDARMALNTLEMA 218

Query: 230 RDFAEVAHAKTITREIADAAL---LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETIS 286
               +             + L     L  DK G +  ++                   IS
Sbjct: 219 VLNGDRDGKHVTITTAGLSQLINTKSLRYDKHGEEHYNI-------------------IS 259

Query: 287 AGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
           A     R++  D    ++++       P    R L+  A + +G+  
Sbjct: 260 ALHKSMRNSDVDAAIYWLMRMLAGGEDPLYIARRLIRFASEDIGLAD 306


>gi|194435164|ref|ZP_03067397.1| putative DNA recombination-associated ATPase RarA [Shigella
           dysenteriae 1012]
 gi|194416602|gb|EDX32738.1| putative DNA recombination-associated ATPase RarA [Shigella
           dysenteriae 1012]
          Length = 447

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 73/331 (22%), Positives = 117/331 (35%), Gaps = 50/331 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP  L ++ GQ    +  K    A +A    L  ++  GPPG GKTTLA+V+AR
Sbjct: 15  PLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIAR 72

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
               +    S        I +A + A    N   R +LF+DE+HR +   ++   P +ED
Sbjct: 73  YANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED 132

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATT-----RVGLLTNPLQDRFGIPIRLNFYE 184
             +  +    E PS       LSR  +    +        +LT  ++D+           
Sbjct: 133 GTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDK----------- 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
                    RG     + + DE    IA    G  R A   L  + D AEV  +     +
Sbjct: 182 --------TRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVNDSGKRVLK 233

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
               + +         ++ D  Y               + ISA     R +  D    + 
Sbjct: 234 PELLSEIAGERSARFDNKGDRFY---------------DLISALHKSVRGSAPDAALYWY 278

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +       P    R  + IA + +G   P 
Sbjct: 279 ARIITAGGDPLYVARRCLAIASEDVGNADPR 309


>gi|152997260|ref|YP_001342095.1| recombination factor protein RarA [Marinomonas sp. MWYL1]
 gi|150838184|gb|ABR72160.1| AAA ATPase central domain protein [Marinomonas sp. MWYL1]
          Length = 455

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 67/328 (20%), Positives = 111/328 (33%), Gaps = 43/328 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP +L+++ GQ       K      +         +  GPPG+GKTT AQ+++ 
Sbjct: 15  PLAARMRPASLDDYIGQSHLVGPGKPLRRMVETGH--CHSFILWGPPGVGKTTFAQLLSH 72

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAM 129
            L   F   S  V++   ++ A +   +        + VLF+DE+HR +   ++   P +
Sbjct: 73  ALDAQFIEISA-VMSGVKEIRAAVDQAKQLRAMNGTQTVLFVDEVHRFNKSQQDAFLPFI 131

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ED     +    E P+       LSR        RV  L  P  +     +     + + 
Sbjct: 132 EDGTFLFIGATTENPAFELNSALLSR-------ARVYRLKTPSVEDVKQVLVRALQDHD- 183

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            K I           + D     +A  + G  R     L  + D            E   
Sbjct: 184 -KGIAADSQG-NAFQIDDYFLSVLAQAADGDIRRGLNFLEILSDL----------VEPGS 231

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
                   D +G           + R    G V  + ISA     R +  D    +M + 
Sbjct: 232 KVTQEQLEDVLGG---------SVRRFDRKGDVFYDQISAFHKSVRGSSPDGALYWMARM 282

Query: 308 GFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                 P    R L+ IA + +G   P 
Sbjct: 283 LDGGCDPLYIARRLLAIASEDIGNADPR 310


>gi|228954684|ref|ZP_04116707.1| hypothetical protein bthur0006_40530 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|229081664|ref|ZP_04214159.1| hypothetical protein bcere0023_42940 [Bacillus cereus Rock4-2]
 gi|229180675|ref|ZP_04308015.1| hypothetical protein bcere0005_40190 [Bacillus cereus 172560W]
 gi|228602820|gb|EEK60301.1| hypothetical protein bcere0005_40190 [Bacillus cereus 172560W]
 gi|228701668|gb|EEL54159.1| hypothetical protein bcere0023_42940 [Bacillus cereus Rock4-2]
 gi|228805011|gb|EEM51607.1| hypothetical protein bthur0006_40530 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 476

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 81/340 (23%), Positives = 132/340 (38%), Gaps = 43/340 (12%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           ++R+ +L   V  +      +RP  ++E  GQ       K+     +A       ++  G
Sbjct: 37  IERDYILRETVQMKQPLAHRMRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYG 94

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSI 119
           PPG GKT++A  +A   G  FR  +  V     D+  ++   +     VL +DE+HRL  
Sbjct: 95  PPGTGKTSIASAIAGSTGTPFRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDK 153

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             ++ L P +E   L L+      P         SR        ++  L    +D   I 
Sbjct: 154 AKQDFLLPHLESGLLTLIGATTSNPFHAINSAIRSRC-------QIFELHALTEDDILIG 206

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR--DFAEV 235
           ++    + E       +G     + VTDEA    A  S G  R A   L       F   
Sbjct: 207 LKRALEDKE-------KGLGEYAVTVTDEALHHFANASGGDMRSAYNALELAVLSSFTTD 259

Query: 236 AHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
             A  IT EIA+  L + +   DK G    D+  L+   ++  G  V             
Sbjct: 260 DQAAEITLEIAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDV------------N 305

Query: 294 DAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            A+  L    +I+ G +Q    GR L+ +A++ +G+  P 
Sbjct: 306 AALHYLAR--LIEAGDLQSI--GRRLLIMAYEDIGLASPQ 341


>gi|47086195|ref|NP_998085.1| ATPase WRNIP1 [Danio rerio]
 gi|45709587|gb|AAH67729.1| Zgc:85976 [Danio rerio]
          Length = 546

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 68/335 (20%), Positives = 122/335 (36%), Gaps = 28/335 (8%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +  +     LLRP TLEE+ GQ +      +     K++   +  ++  GPPG GKTTLA
Sbjct: 111 LKNQKPLAELLRPSTLEEYFGQNKLIGEQTLLRSLLKSQE--IPSLILWGPPGCGKTTLA 168

Query: 72  QVVA---RELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIV 121
            ++A   ++ G     T     A   D+  ++   +        + VLFIDEIHR +   
Sbjct: 169 HIIASSIKQKGTGRFVTLSATSASVSDVREVIKQAQNELRLCKRKTVLFIDEIHRFNKSQ 228

Query: 122 EEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           ++   P +E   + L+    E PS +     LSR  ++            +  R    + 
Sbjct: 229 QDTFLPHVECGTITLIGATTENPSFQVNSALLSRCRVLVLERLSVEAVGSILRRAVDFLD 288

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           L   + E  +           + V  +A   +A    G  R A   L+       +  + 
Sbjct: 289 LRILDSE--ERHSSEICSEAQVCVEQKALDTLAHLCDGDARAALNGLQLAVQACVLQSSS 346

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
              R    + ++R    K    +  + Y      ++         ISA     R +  + 
Sbjct: 347 NHNR---SSTVVREQHIKEALQRSHILYDKAGEEHYNC-------ISALHKSMRGSDANA 396

Query: 300 IEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
              ++ +       P    R L+  A + +G+  P
Sbjct: 397 ALYWLARMLEGGEDPLYVARRLVRFASEDIGLADP 431


>gi|56695429|ref|YP_165777.1| recombination factor protein RarA [Ruegeria pomeroyi DSS-3]
 gi|56677166|gb|AAV93832.1| ATPase, AAA family [Ruegeria pomeroyi DSS-3]
          Length = 438

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 78/328 (23%), Positives = 126/328 (38%), Gaps = 58/328 (17%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              LRP++L E  GQ +               + +L  ++F GPPG+GKTT+A+++A+E 
Sbjct: 22  ADRLRPQSLGEVIGQQQVLGPEAPL--GVMLASGSLSSLVFWGPPGVGKTTIARLLAQET 79

Query: 79  GVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
            ++F   S      P + K  + A +        +LF+DEIHR +   ++   P MED  
Sbjct: 80  DLHFVQISAIFTGVPDLKKVFEAARIRRGNGQGTLLFVDEIHRFNKAQQDGFLPHMEDGT 139

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + L+    E PS       LSR  ++                            EDL+ +
Sbjct: 140 ILLVGATTENPSFELNAALLSRAQVLVL---------------------ERLSAEDLEHL 178

Query: 192 VQRGAKLTG--LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
             R  +     L +T EA   +   + G  R    L+ +V   A    A  + RE   A 
Sbjct: 179 TARAERELDRELPLTPEARLALQEMADGDGRALLNLIEQV---AAWKVAAPLEREALAAR 235

Query: 250 LLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           L+R A   DK G +  +L                   ISA     R +  D    ++ + 
Sbjct: 236 LMRRATKYDKSGDEHYNL-------------------ISALHKSVRGSDPDAALYWLARM 276

Query: 308 GFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                 PR   R +  +A + +G+  P 
Sbjct: 277 LTGGEDPRYLARRITRMAVEDIGLADPQ 304


>gi|254283872|ref|ZP_04958840.1| ATPase, AAA family [gamma proteobacterium NOR51-B]
 gi|219680075|gb|EED36424.1| ATPase, AAA family [gamma proteobacterium NOR51-B]
          Length = 445

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 80/347 (23%), Positives = 128/347 (36%), Gaps = 54/347 (15%)

Query: 1   MMDREGLLSRNVS--QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M +++ L + + S  +     +  RP  L ++ GQV      K   EA + R + L   +
Sbjct: 1   MANQQPLFAADDSMAKTRPLAARRRPSALADYVGQVHVLGPGKPLREAIE-RGD-LHSFI 58

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFID 112
             GPPG GKTTLA++ A +    F   S  V+A   D+  ++        +    VLF+D
Sbjct: 59  LWGPPGTGKTTLARLSAHQANAEFVQISA-VMAGVKDIRDVVARASQERGMGRATVLFVD 117

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           E+HR +   ++   P +ED  L  +    E PS       LSR  +            PL
Sbjct: 118 EVHRFNKAQQDAFLPYVEDGTLIFIGATTENPSFEVNSALLSRARVYKL--------QPL 169

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQR--GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            D             ++L  IV+    A+ T + V+D+A  ++   + G  R A   L  
Sbjct: 170 SD-------------DELSRIVRAALAAEFTDVTVSDDALSQLVASADGDARRALGQLEL 216

Query: 229 VRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAG 288
             D A   +  T   E     + R                    R   GG    + ISA 
Sbjct: 217 AVDLASAENGSTTITETTIEEITRGLA----------------RRFDKGGEAFYDQISAL 260

Query: 289 LSEPRDAIEDLIEPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
               R +  D    +  +       P    R  + +A + +G   P 
Sbjct: 261 HKSVRGSDPDATLYWFARMMDGGCDPFYVARRAIRMATEDIGNADPR 307


>gi|226330732|ref|ZP_03806250.1| hypothetical protein PROPEN_04652 [Proteus penneri ATCC 35198]
 gi|225201527|gb|EEG83881.1| hypothetical protein PROPEN_04652 [Proteus penneri ATCC 35198]
          Length = 354

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 82/335 (24%), Positives = 127/335 (37%), Gaps = 42/335 (12%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
            SRN  Q     + +RP TLE++ GQ    +  K    A KA    L  ++  GPPG GK
Sbjct: 16  FSRNEFQ--PLAARMRPETLEQYIGQTHLLAEGKPLPRAIKAGQ--LHSMILWGPPGTGK 71

Query: 68  TTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           TTLA+++ R    +    S        I ++ ++A    N   R +LF+DE+HR +   +
Sbjct: 72  TTLAEIIGRYAQADIERLSAVTSGIKEIRESIEIARQNRNAGRRTILFVDEVHRFNKSQQ 131

Query: 123 EILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +   P +ED  +  +    E PS       LSR        RV LL +  +    + ++ 
Sbjct: 132 DAFLPHIEDGTITFIGATTENPSFELNSALLSR-------ARVYLLRSLTEADIELVLQQ 184

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
              + E       RG     + + ++    IA    G  R +  LL  + D AEV +   
Sbjct: 185 ALDDTE-------RGLGGRNIILPNDTRKMIAQLVNGDARRSLNLLEMMADIAEVDNQGK 237

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
                   ALL     +              AR    G    + ISA     R +  D  
Sbjct: 238 RVLTP---ALLTEISGERS------------ARFDNKGDRFYDLISALHKSVRGSAPDAA 282

Query: 301 EPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
             +  +       P    R L+ IA + +G   P 
Sbjct: 283 LYWYARIITAGGDPLYVARRLLAIASEDVGNADPR 317


>gi|291087419|ref|ZP_06571936.1| replication-associated recombination protein A [Clostridium sp.
           M62/1]
 gi|291075102|gb|EFE12466.1| replication-associated recombination protein A [Clostridium sp.
           M62/1]
          Length = 484

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 71/343 (20%), Positives = 126/343 (36%), Gaps = 51/343 (14%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M++  +   N        S +RP +LEEF GQ        +     +   + +  ++F G
Sbjct: 23  MEQISMFD-NAPVYSPLASRMRPESLEEFVGQSHLLGEGMLLRNLIER--DKVSSMIFWG 79

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIH 115
           PPG+GKTTLA ++A      F + S  V +   ++  ++   E+      + V+F+DEIH
Sbjct: 80  PPGVGKTTLAGIIANRTNAGFINFSA-VTSGIKEIREVMAKAEEARHRGMKTVVFVDEIH 138

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P +E   + L+    E PS       LSR  +             L   
Sbjct: 139 RFNKAQQDAFLPYVERGSIILIGATTENPSFEINSALLSRCRVFVLKELSREELTALLKH 198

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                               RG     + + +E    IA  + G  R A  +L       
Sbjct: 199 ALTSS---------------RGYGYLKVEIEEELLDMIARFAGGDARTALNVLEMAVTNG 243

Query: 234 EVAHAKT-ITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
           E+   +T ++RE+    + + +   DK G +  +L                   ISA   
Sbjct: 244 EIHGDRTVVSREVIKQCIGKKSLLYDKKGEEHYNL-------------------ISALHK 284

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
             R++  D    ++ +       P    R L+  A + +G+  
Sbjct: 285 SMRNSDPDAAVYWLERMLEAGEDPLYVARRLIRFASEDIGMAD 327


>gi|148241495|ref|YP_001226652.1| recombination factor protein RarA/unknown domain fusion protein
           [Synechococcus sp. RCC307]
 gi|147849805|emb|CAK27299.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [Synechococcus sp. RCC307]
          Length = 719

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 79/332 (23%), Positives = 129/332 (38%), Gaps = 51/332 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRPR+L+EF GQ       ++   A  A  + L  ++  GPPG GKTTLA+++A 
Sbjct: 20  PLAERLRPRSLDEFIGQDAILGPGRLLRRAIAA--DRLGSLILHGPPGTGKTTLARIIAN 77

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAM 129
               +F S +  V+A   DL A +   ++       R +LFIDE+HR +   ++ L P +
Sbjct: 78  TTRCHFSSLNA-VLAGIKDLRAEVEQAQERLGRHGLRTLLFIDEVHRFNTSQQDALLPWV 136

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E+  + L+    E P     K  +SR  L    +      + + DR              
Sbjct: 137 ENGTVTLIGATTENPFFEVNKALVSRSRLFRLQSLDQAALHQVLDR-------------- 182

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF--AEVAHAKTITREI 245
             +    G     + +  EA   +   + G  R     L    +   A  + A  IT  +
Sbjct: 183 ALSDRTHGYGERSIQLDAEARAHLVEVAGGDARSLLNALELAVETTDANASGAIQITLAV 242

Query: 246 ADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           A+ ++ + A   DK G    D                   TISA +   R +  D    +
Sbjct: 243 AEESIQQQAVLYDKQGDAHFD-------------------TISAFIKSIRGSDPDAALFW 283

Query: 304 MIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           + +       PR   R L+  A + +G+  P 
Sbjct: 284 LARMVEAGEDPRFIFRRLLISAGEDIGLADPQ 315


>gi|145641740|ref|ZP_01797316.1| formyltetrahydrofolate deformylase [Haemophilus influenzae R3021]
 gi|145273554|gb|EDK13424.1| formyltetrahydrofolate deformylase [Haemophilus influenzae 22.4-21]
          Length = 446

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 70/331 (21%), Positives = 119/331 (35%), Gaps = 51/331 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP +LE++ GQ       K   +A +A    +  ++  GPPG GKTTLA+++A+
Sbjct: 15  PLAAKMRPTSLEQYFGQSHLIGEGKPLRKAIQAGH--IHSMILWGPPGTGKTTLAEIIAQ 72

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            +       S        I +A + A      + + +LF+DE+HR +   ++   P +ED
Sbjct: 73  RINAEVERISAVTSGIKEIREAIERAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIED 132

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             +  +    E PS       LSR        RV +L +         ++    + E   
Sbjct: 133 GTVIFIGATTENPSFELNNALLSR-------ARVYVLKSLTTAEIEQVLQQAVEDPE--- 182

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
               RG     L + +     +A    G  R+A   L  + D A+               
Sbjct: 183 ----RGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMADETENGK--------- 229

Query: 250 LLRLAIDKMGFDQLDLRYLTMI-----ARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
                       ++D   L  +     AR    G    + ISA     R +  D    + 
Sbjct: 230 ------------KIDRTLLKEVLGERQARFDKQGDRFYDLISALHKSVRGSAPDAALYWY 277

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +       P    R L+ IA + +G   P 
Sbjct: 278 ARILTAGGDPLYVARRLLAIASEDVGNADPR 308


>gi|330829975|ref|YP_004392927.1| ATPase [Aeromonas veronii B565]
 gi|328805111|gb|AEB50310.1| ATPase, AAA family [Aeromonas veronii B565]
          Length = 445

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 71/327 (21%), Positives = 115/327 (35%), Gaps = 43/327 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP+ L+++ GQ       K   +A  A       ++  GPPG GKTTLA+++A 
Sbjct: 14  PLAARMRPQNLDQYIGQQHILGADKPLRKAILAGH--CHSMILWGPPGTGKTTLAELMAH 71

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130
                    S  V +   ++ A +   ++      R +LF+DE+HR +   +++  P +E
Sbjct: 72  YCQAEVERLSA-VTSGIKEIRAAIDKAKENSWRGVRTILFVDEVHRFNKSQQDVFLPHIE 130

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           D  +  +    E PS       LSR        RV LL    +      +     +    
Sbjct: 131 DGTITFIGATTENPSFELNNALLSR-------ARVYLLKRLEESDILAMLDQAMTDP--- 180

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
                RG     L         +A    G  R +   L  + D AE   A     + A  
Sbjct: 181 -----RGLNDPALTFAPGVKEALAKAVDGDGRKSLNYLELLADMAETDSAGARVIDSALL 235

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           A +                   +AR   GG    + ISA     R +  D    +  +  
Sbjct: 236 AAVVGEH---------------VARFDKGGDHFYDLISAVHKSIRGSAPDAALYWYARMV 280

Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIPH 333
                P    R L+ IA + +G   P 
Sbjct: 281 SAGCDPLYIARRLLAIASEDVGNADPR 307


>gi|145635701|ref|ZP_01791396.1| predicted ATPase [Haemophilus influenzae PittAA]
 gi|145267024|gb|EDK07033.1| predicted ATPase [Haemophilus influenzae PittAA]
          Length = 446

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 70/331 (21%), Positives = 118/331 (35%), Gaps = 51/331 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP +LE++ GQ       K   +A +A    +  ++  GPPG GKTTLA+++A+
Sbjct: 15  PLAAKMRPTSLEQYFGQSHLIGEGKPLRKAIQAGH--IHSMILWGPPGTGKTTLAEIIAQ 72

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            +       S        I +A + A      + + +LF+DE+HR +   ++   P +ED
Sbjct: 73  RINAEVERISAVTSGIKEIREAIERAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIED 132

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             +  +    E PS       LSR        RV +L +         ++    + E   
Sbjct: 133 GTVIFIGATTENPSFELNNALLSR-------ARVYVLKSLTTAEIEQVLQQAIEDPE--- 182

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
               RG     L + +     +     G  R+A   L  + D AE               
Sbjct: 183 ----RGLGKERLILEENLLQVLGEYVNGDARLALNCLELMVDMAEETENGK--------- 229

Query: 250 LLRLAIDKMGFDQLDLRYLTMI-----ARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
                       ++D   L  +     AR    G    + ISA     R +  D    + 
Sbjct: 230 ------------KIDRTLLKEVLGERQARFDKQGDRFYDLISALHKSVRGSAPDAALYWY 277

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +       P    R L+ IA + +G   P 
Sbjct: 278 ARILTAGGDPLYVARRLLAIASEDVGNADPR 308


>gi|325262409|ref|ZP_08129146.1| ATPase, AAA family [Clostridium sp. D5]
 gi|324032241|gb|EGB93519.1| ATPase, AAA family [Clostridium sp. D5]
          Length = 439

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 78/345 (22%), Positives = 136/345 (39%), Gaps = 51/345 (14%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M++  L   +  Q     S LRP TL++F GQ       KV  +  +   + +  ++F G
Sbjct: 4   MEQMNLFD-DRRQTAPLASRLRPDTLKDFVGQEHLLGKGKVLRQLIER--DQISSMIFWG 60

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIH 115
           PPG+GKTTLA ++A +   +F + S  V +   ++  ++   E       R VLF+DEIH
Sbjct: 61  PPGVGKTTLASIIAGQTKADFINFSA-VTSGIKEIKEVMNQAEQSRRMGIRTVLFVDEIH 119

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P +E   + L+    E PS       LSR  +         +   L+++
Sbjct: 120 RFNKAQQDAFLPFVEKGSIILIGATTENPSFEVNAALLSRCRV--------FVLKALEEK 171

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
             + +  +             G     + +T      IA  + G  R A   L       
Sbjct: 172 DLVKLLSHALANPS-------GFGGQNVHITPTQIEAIAAFANGDARTALNTLEMAVLNG 224

Query: 234 EVAHAK-TITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
           E++ A  T+T E  +  + + +   DK G +  +L                   ISA   
Sbjct: 225 EISAAGITVTNEGLEQCISKKSLLYDKNGEEHYNL-------------------ISALHK 265

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
             R++  D    +M++       P    R L+  A + +G+   H
Sbjct: 266 SMRNSDPDAAIYWMMRMLEGGENPLYIARRLVRFASEDIGMADSH 310


>gi|294788556|ref|ZP_06753798.1| magnesium chelatase, subunit ChlI family [Simonsiella muelleri ATCC
           29453]
 gi|294483433|gb|EFG31118.1| magnesium chelatase, subunit ChlI family [Simonsiella muelleri ATCC
           29453]
          Length = 442

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 67/343 (19%), Positives = 116/343 (33%), Gaps = 51/343 (14%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MM +  L     +        LRP+ L +  GQ       K    +    +     ++  
Sbjct: 5   MMTQ-NLFQTTPTP--PLAERLRPKILSDVVGQQHLIGEGKPL--SVAIASGVPHSMILW 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEI 114
           G  G+GKTTLAQ++A      F S S  V +   ++   +   E       R ++F+DE+
Sbjct: 60  GATGVGKTTLAQIIANSFDAQFISLSA-VFSGVKEIREAVLKAELAWQQGRRTIIFVDEV 118

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++   P +E   +  +    E PS       LSR ++           NPL  
Sbjct: 119 HRFNKAQQDAFLPHVESGLITFIGATTENPSFEVNAALLSRASVYTL--------NPLTP 170

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
                +    + + + + I+              A   I   + G  R    LL ++ + 
Sbjct: 171 AELTLLCQRVFRLPEYQGIMLES----------PAEQLIIQSADGDARRLLNLLEQIINA 220

Query: 233 AEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEP 292
               +  TI  +     +                  + I R    G      ISA     
Sbjct: 221 NAALNLPTINAKFTAQTIG-----------------SQIQRFDKNGEQFYNQISALHKSI 263

Query: 293 RDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           R +  +    +  +       PR   R L+ IAW+ +G+  P 
Sbjct: 264 RGSHPNAALYWFCRMLEGGVDPRYLSRRLIRIAWEDIGLADPR 306


>gi|193064678|ref|ZP_03045757.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           E22]
 gi|194428364|ref|ZP_03060905.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           B171]
 gi|218553478|ref|YP_002386391.1| recombination factor protein RarA [Escherichia coli IAI1]
 gi|260843142|ref|YP_003220920.1| recombination protein [Escherichia coli O103:H2 str. 12009]
 gi|192927735|gb|EDV82350.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           E22]
 gi|194413579|gb|EDX29860.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           B171]
 gi|218360246|emb|CAQ97796.1| recombination protein [Escherichia coli IAI1]
 gi|257758289|dbj|BAI29786.1| recombination protein [Escherichia coli O103:H2 str. 12009]
 gi|323159517|gb|EFZ45497.1| ATPase family associated with various cellular activities family
           protein [Escherichia coli E128010]
 gi|323947319|gb|EGB43327.1| ATPase [Escherichia coli H120]
 gi|324116105|gb|EGC10029.1| ATPase [Escherichia coli E1167]
 gi|332088848|gb|EGI93960.1| ATPase family associated with various cellular activities family
           protein [Shigella boydii 5216-82]
          Length = 447

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 73/331 (22%), Positives = 116/331 (35%), Gaps = 50/331 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP  L ++ GQ    +  K    A +A    L  ++  GPPG GKTTLA+V+AR
Sbjct: 15  PLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIAR 72

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
               +    S        I +A + A    N   R +LF+DE+HR +   ++   P +ED
Sbjct: 73  YANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED 132

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATT-----RVGLLTNPLQDRFGIPIRLNFYE 184
             +  +    E PS       LSR  +    +        +LT  ++D+           
Sbjct: 133 GTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDK----------- 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
                    RG     + + DE    IA    G  R A   L  + D AEV  +     +
Sbjct: 182 --------TRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVNDSGKRVLK 233

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
                 +         ++ D  Y               + ISA     R +  D    + 
Sbjct: 234 PELLTEIAGERSARFDNKGDRFY---------------DLISALHKSVRGSAPDAALYWY 278

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +       P    R  + IA + +G   P 
Sbjct: 279 ARIITAGGDPLYVARRCLAIASEDVGNADPR 309


>gi|146311073|ref|YP_001176147.1| recombination factor protein RarA [Enterobacter sp. 638]
 gi|145317949|gb|ABP60096.1| Recombination protein MgsA [Enterobacter sp. 638]
          Length = 447

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 76/335 (22%), Positives = 117/335 (34%), Gaps = 42/335 (12%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
            S N  Q     + +RP  L ++ GQ    +  K    A +A    L  ++  GPPG GK
Sbjct: 8   FSENAFQ--PLAARMRPENLAQYIGQQHLLAPGKPLPRAIEAGH--LHSMILWGPPGTGK 63

Query: 68  TTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           TTLA+V+AR    +    S        I +A + A    N   R +LF+DE+HR +   +
Sbjct: 64  TTLAEVIARYADADVERLSAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQ 123

Query: 123 EILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +   P +ED  +  +    E PS       LSR  +         L  PL       +  
Sbjct: 124 DAFLPHIEDGTIFFIGATTENPSFELNSALLSRARV--------YLLKPLTTEDIEQVLT 175

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
              E +       RG     + + D+    IA    G  R A   L  + D AE+  A  
Sbjct: 176 QAMEDKA------RGYGGQDVVLPDDTRRAIAELVNGDARRALNTLEMMADMAELGDAGK 229

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
              +      +         ++ D  Y               + ISA     R +  D  
Sbjct: 230 RVLKSELLTEIAGERSARFDNKGDRFY---------------DLISALHKSVRGSAPDAA 274

Query: 301 EPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
             +  +       P    R  + IA + +G   P 
Sbjct: 275 LYWYARIITAGGDPLYVARRCLAIASEDVGNADPR 309


>gi|74311450|ref|YP_309869.1| recombination factor protein RarA [Shigella sonnei Ss046]
 gi|157159331|ref|YP_001462090.1| recombination factor protein RarA [Escherichia coli E24377A]
 gi|218694365|ref|YP_002402032.1| recombination factor protein RarA [Escherichia coli 55989]
 gi|260854183|ref|YP_003228074.1| recombination protein [Escherichia coli O26:H11 str. 11368]
 gi|260867064|ref|YP_003233466.1| recombination protein [Escherichia coli O111:H- str. 11128]
 gi|307311721|ref|ZP_07591361.1| AAA ATPase central domain protein [Escherichia coli W]
 gi|73854927|gb|AAZ87634.1| putative polynucleotide enzyme [Shigella sonnei Ss046]
 gi|157081361|gb|ABV21069.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           E24377A]
 gi|218351097|emb|CAU96801.1| recombination protein [Escherichia coli 55989]
 gi|257752832|dbj|BAI24334.1| recombination protein [Escherichia coli O26:H11 str. 11368]
 gi|257763420|dbj|BAI34915.1| recombination protein [Escherichia coli O111:H- str. 11128]
 gi|306908276|gb|EFN38775.1| AAA ATPase central domain protein [Escherichia coli W]
 gi|315060177|gb|ADT74504.1| recombination protein [Escherichia coli W]
 gi|323157222|gb|EFZ43345.1| magnesium chelatase, subunit ChlI family protein [Escherichia coli
           EPECa14]
 gi|323165353|gb|EFZ51140.1| magnesium chelatase, subunit ChlI family protein [Shigella sonnei
           53G]
 gi|323172136|gb|EFZ57774.1| magnesium chelatase, subunit ChlI family protein [Escherichia coli
           LT-68]
 gi|323379266|gb|ADX51534.1| AAA ATPase central domain protein [Escherichia coli KO11]
          Length = 447

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 73/331 (22%), Positives = 116/331 (35%), Gaps = 50/331 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP  L ++ GQ    +  K    A +A    L  ++  GPPG GKTTLA+V+AR
Sbjct: 15  PLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIAR 72

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
               +    S        I +A + A    N   R +LF+DE+HR +   ++   P +ED
Sbjct: 73  YANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED 132

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATT-----RVGLLTNPLQDRFGIPIRLNFYE 184
             +  +    E PS       LSR  +    +        +LT  ++D+           
Sbjct: 133 GTITFIGATTENPSFELNSALLSRARVYLLKSLGTEDIEQVLTQAMEDK----------- 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
                    RG     + + DE    IA    G  R A   L  + D AEV  +     +
Sbjct: 182 --------TRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVNDSGKRVLK 233

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
                 +         ++ D  Y               + ISA     R +  D    + 
Sbjct: 234 PELLTEIAGERSARFDNKGDRFY---------------DLISALHKSVRGSAPDAALYWY 278

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +       P    R  + IA + +G   P 
Sbjct: 279 ARIITAGGDPLYVARRCLAIASEDVGNADPR 309


>gi|228923151|ref|ZP_04086442.1| hypothetical protein bthur0011_41310 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228836530|gb|EEM81880.1| hypothetical protein bthur0011_41310 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 476

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 80/340 (23%), Positives = 132/340 (38%), Gaps = 43/340 (12%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           ++R+ +L   V  +      +RP  ++E  GQ       K+     +A       ++  G
Sbjct: 37  IERDYILRETVQMKQPLAHRMRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYG 94

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSI 119
           PPG GKT++A  +A   G  FR  +  V     D+  ++   +     VL +DE+HRL  
Sbjct: 95  PPGTGKTSIASAIAGSTGTPFRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDK 153

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             ++ L P +E   L L+      P         SR        ++  L    +D   I 
Sbjct: 154 AKQDFLLPHLESGLLTLIGATTSNPFHAINSAIRSRC-------QIFELHALTEDDILIG 206

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR--DFAEV 235
           ++    + E       +G     + VTD+A    A  S G  R A   L       F   
Sbjct: 207 LKRALEDKE-------KGLGEYAVTVTDDALHHFANASGGDMRSAYNALELAVLSSFTTD 259

Query: 236 AHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
             A  IT EIA+  L + +   DK G    D+  L+   ++  G  V             
Sbjct: 260 DQAAEITLEIAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDV------------N 305

Query: 294 DAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            A+  L    +I+ G +Q    GR L+ +A++ +G+  P 
Sbjct: 306 AALHYLAR--LIEAGDLQSI--GRRLLIMAYEDIGLASPQ 341


>gi|254509759|ref|ZP_05121826.1| ATPase, AAA family [Rhodobacteraceae bacterium KLH11]
 gi|221533470|gb|EEE36458.1| ATPase, AAA family [Rhodobacteraceae bacterium KLH11]
          Length = 437

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 75/337 (22%), Positives = 127/337 (37%), Gaps = 58/337 (17%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
              +        LRP++L +  GQ +               + +L  ++F GPPG+GKTT
Sbjct: 12  PAAAPHRPLADRLRPQSLGDVIGQQQVLGPDAPL--GVMLASGSLSSLIFWGPPGVGKTT 69

Query: 70  LAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           +A+++A+E  ++F   S      P + K  + A +        +LF+DEIHR +   ++ 
Sbjct: 70  IARLLAQETDLHFVQISAIFTGVPDLKKVFEAAKIRRQNGQGTLLFVDEIHRFNKAQQDG 129

Query: 125 LYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             P MED  + L+    E PS       LSR  ++              +R G+      
Sbjct: 130 FLPHMEDGTILLVGATTENPSFELNAAVLSRSQVLVL------------ERLGLA----- 172

Query: 183 YEIEDLKTIVQRGAKLTG--LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
               DL+ + QR  K     L +T +A   +   + G  R    L+ +V   A       
Sbjct: 173 ----DLERLTQRAEKELDRALPLTAQARDALQEMADGDGRALLNLIEQV---AAWTVDAP 225

Query: 241 ITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
           +  +     L+R A   DK G +  +L                   ISA     R +  D
Sbjct: 226 LDPDALSTRLMRRAAKYDKSGDEHYNL-------------------ISALHKSVRGSDPD 266

Query: 299 LIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
               +  +       PR   R +  +A + +G+  P 
Sbjct: 267 AALYWFARMLTGGEDPRYLARRITRMAVEDIGLADPQ 303


>gi|325496837|gb|EGC94696.1| recombination factor protein RarA [Escherichia fergusonii ECD227]
          Length = 447

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 73/331 (22%), Positives = 116/331 (35%), Gaps = 50/331 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP  L ++ GQ    +  K    A +A    L  ++  GPPG GKTTLA+V+AR
Sbjct: 15  PLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIAR 72

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
               +    S        I +A + A    N   R +LF+DE+HR +   ++   P +ED
Sbjct: 73  YANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED 132

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATT-----RVGLLTNPLQDRFGIPIRLNFYE 184
             +  +    E PS       LSR  +    +        +LT  ++D+           
Sbjct: 133 GTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDK----------- 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
                    RG     + + DE    IA    G  R A   L  + D AEV  +     +
Sbjct: 182 --------TRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLK 233

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
                 +         ++ D  Y               + ISA     R +  D    + 
Sbjct: 234 PELLTEIAGERSTRFDNKGDRFY---------------DLISALHKSVRGSAPDAALYWY 278

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +       P    R  + IA + +G   P 
Sbjct: 279 ARIITAGGDPLYVARRCLAIASEDVGNADPR 309


>gi|229192611|ref|ZP_04319572.1| hypothetical protein bcere0002_42620 [Bacillus cereus ATCC 10876]
 gi|228590918|gb|EEK48776.1| hypothetical protein bcere0002_42620 [Bacillus cereus ATCC 10876]
          Length = 476

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 81/340 (23%), Positives = 132/340 (38%), Gaps = 43/340 (12%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           ++R+ +L   V  +      +RP  ++E  GQ       K+     +A       ++  G
Sbjct: 37  IERDYILRETVQMKQPLAHRMRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYG 94

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSI 119
           PPG GKT++A  +A   G  FR  +  V     D+  ++   +     VL +DE+HRL  
Sbjct: 95  PPGTGKTSIASAIAGSTGTPFRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDK 153

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             ++ L P +E   L L+      P         SR        ++  L    +D   I 
Sbjct: 154 AKQDFLLPHLESGLLTLIGATTSNPFHAINSAIRSRC-------QIFELHALTEDDILIG 206

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR--DFAEV 235
           ++    + E       +G     + VTDEA    A  S G  R A   L       F   
Sbjct: 207 LKRALEDKE-------KGLGEYAVTVTDEALHHFANASGGDMRSAYNALELAVLSSFTTD 259

Query: 236 AHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
             A  IT EIA+  L + +   DK G    D+  L+   ++  G  V             
Sbjct: 260 DQAAEITLEIAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDV------------N 305

Query: 294 DAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            A+  L    +I+ G +Q    GR L+ +A++ +G+  P 
Sbjct: 306 AALHYLAR--LIEAGDLQSI--GRRLLIMAYEDIGLASPQ 341


>gi|282878511|ref|ZP_06287292.1| recombination factor protein RarA [Prevotella buccalis ATCC 35310]
 gi|281299302|gb|EFA91690.1| recombination factor protein RarA [Prevotella buccalis ATCC 35310]
          Length = 432

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 78/331 (23%), Positives = 127/331 (38%), Gaps = 53/331 (16%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +     +RPRTL+E+ GQ        V  +  +A    +   +  GPPG+GKTTLAQ++A
Sbjct: 3   EPLAERMRPRTLDEYVGQQHLVGEGAVLRKMIEA--GRISSFILWGPPGVGKTTLAQIIA 60

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPA 128
             L   F + S  V +   D+  ++   ++         +LFIDEIHR S   ++ L  A
Sbjct: 61  NMLQTPFYTLSA-VTSGVKDVREVIERAKNSSFFNSASPILFIDEIHRFSKSQQDSLLGA 119

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           +E   + L+    E PS   ++  LSR  L    +        L  R             
Sbjct: 120 VEKGVVTLIGATTENPSFEVIRPLLSRCQLYVLKSLEKEDLLELLHR------------- 166

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
            +   ++   K   + + +  A  +   S G  R    +L  V   A       IT E+ 
Sbjct: 167 AIHEDIE--LKQRHITLQETGA--VLRYSGGDARKLLNILDLVIG-ASATDEVVITDELV 221

Query: 247 DAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +  L +   A DK G    D+                   ISA +   R +  D    +M
Sbjct: 222 ETQLQQNPLAYDKGGEMHYDI-------------------ISAFIKSIRGSDPDAALYWM 262

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +       P+   R L+  A + +G+  P+
Sbjct: 263 ARMIEGGEDPQFIARRLVISAAEDVGLANPN 293


>gi|289432988|ref|YP_003462861.1| ATPase AAA [Dehalococcoides sp. GT]
 gi|288946708|gb|ADC74405.1| AAA ATPase central domain protein [Dehalococcoides sp. GT]
          Length = 452

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 77/348 (22%), Positives = 131/348 (37%), Gaps = 53/348 (15%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD     +  + +  + ++  +RP TL EF GQ       +    + +  ++ +  ++F 
Sbjct: 1   MDLFDAGAEKLKKSQSPLAARMRPETLAEFVGQSHLIGEGRALRLSLE--SDKIPSLIFW 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDE 113
           GPPG GKTTLA ++A  L  +F + S  V A   DL  ++    +R        +LFIDE
Sbjct: 59  GPPGSGKTTLANIIAHSLDAHFSALSA-VSAGVADLRRVVEEARERLKLYHRRTILFIDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++ + P +ED  + L+    E PS       LSR  +    +      + + 
Sbjct: 118 IHRFNKSQQDAILPYVEDGTVVLIGATTENPSFEVNSALLSRAQVYVLNSLSEKEISVIL 177

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R           +E      + G       + +EA   I+  ++G  RIA  +L     
Sbjct: 178 KR----------SLEG-----ENGLGNYHARLLEEAEKHISSFAQGDARIALNILELAVM 222

Query: 232 FAEVAHAK---TITREIADAALLRL-AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISA 287
                          ++ DAA  +    DK G    DL                   ISA
Sbjct: 223 TTLPDKDGWRVVGLPQVEDAAQKKSLRYDKSGEQHYDL-------------------ISA 263

Query: 288 GLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                R +  D    ++ +       P    R ++  A + +G+  P 
Sbjct: 264 LHKTMRGSDPDAAIYWLGRMLEAGEDPLYIARRVIRFATEDVGLADPQ 311


>gi|229071908|ref|ZP_04205119.1| hypothetical protein bcere0025_40750 [Bacillus cereus F65185]
 gi|228711204|gb|EEL63168.1| hypothetical protein bcere0025_40750 [Bacillus cereus F65185]
          Length = 476

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 81/340 (23%), Positives = 132/340 (38%), Gaps = 43/340 (12%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           ++R+ +L   V  +      +RP  ++E  GQ       K+     +A       ++  G
Sbjct: 37  IERDYILRETVQMKQPLAHRMRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYG 94

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSI 119
           PPG GKT++A  +A   G  FR  +  V     D+  ++   +     VL +DE+HRL  
Sbjct: 95  PPGTGKTSIASAIAGSTGTPFRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDK 153

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             ++ L P +E   L L+      P         SR        ++  L    +D   I 
Sbjct: 154 AKQDFLLPHLESGLLTLIGATTSNPFHAINSAIRSRC-------QIFELHALTEDDILIG 206

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR--DFAEV 235
           ++    + E       +G     + VTDEA    A  S G  R A   L       F   
Sbjct: 207 LKRALEDKE-------KGLGEYAVTVTDEALHHFANASGGDMRSAYNALELAVLSSFTTD 259

Query: 236 AHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
             A  IT EIA+  L + +   DK G    D+  L+   ++  G  V             
Sbjct: 260 DQAAEITLEIAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDV------------N 305

Query: 294 DAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            A+  L    +I+ G +Q    GR L+ +A++ +G+  P 
Sbjct: 306 AALHYLAR--LIEAGDLQSI--GRRLLIMAYEDIGLASPQ 341


>gi|119470156|ref|ZP_01612922.1| recombination protein [Alteromonadales bacterium TW-7]
 gi|119446577|gb|EAW27851.1| recombination protein [Alteromonadales bacterium TW-7]
          Length = 447

 Score =  154 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 70/328 (21%), Positives = 111/328 (33%), Gaps = 45/328 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP TL+E+ GQ    S+ K   +A  A       ++  GPPG+GKTTLAQ++A 
Sbjct: 14  PLAARMRPTTLDEYIGQQHLLSSDKPLHQAIVA--GRCHSLILWGPPGVGKTTLAQIIAN 71

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAM 129
                    S  V A   D+   +T           R ++F+DE+HR +   ++   P +
Sbjct: 72  HADAELIQMSA-VTAGVKDIRDSVTQAHDNLQSRGQRTLMFVDEVHRFNKSQQDAFLPHI 130

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ED     +    E PS       LSR  +    +                   + Y + +
Sbjct: 131 EDGTFIFVGATTENPSFALNNAILSRARVYVLKSLQE---------------SDLYTVIE 175

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
                        + + D A   +   S G  R    LL +  D     +      E   
Sbjct: 176 RALEQDEQLNQKNIVIADNAKKALCQASGGDARKVLNLLEQAVDLTTEHNGTYNVDEHV- 234

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
                          L     T +A+   GG    + ISA     R +  D    +  + 
Sbjct: 235 ---------------LSQVLPTHLAKYDKGGDEFYDLISAFHKSVRGSSPDGALYWYCRI 279

Query: 308 GFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                 P    R L+ IA + +G   P 
Sbjct: 280 LAGGGDPLYVARRLLAIATEDIGNADPR 307


>gi|315633927|ref|ZP_07889216.1| replication-associated recombination protein A [Aggregatibacter
           segnis ATCC 33393]
 gi|315477177|gb|EFU67920.1| replication-associated recombination protein A [Aggregatibacter
           segnis ATCC 33393]
          Length = 446

 Score =  154 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 74/343 (21%), Positives = 123/343 (35%), Gaps = 55/343 (16%)

Query: 8   LSRNVSQED--ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            S + ++ D     + +RP TL ++ GQ       K   +A +A    +  ++F GPPG 
Sbjct: 4   FSFDFNENDFRPLAARMRPTTLAQYCGQSHLLGEGKPLRKAIEA--GYVHSMIFWGPPGT 61

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSI 119
           GKTTLA+++A+ +       S  V +   ++   +   +       R +LF+DE+HR + 
Sbjct: 62  GKTTLAEIIAQRIQAEVERISA-VTSGIKEIREAIEKAKQNKLAGLRTILFVDEVHRFNK 120

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             ++   P +ED  +  +    E PS       LSR        RV +L           
Sbjct: 121 SQQDAFLPHIEDGTIIFIGATTENPSFELNNALLSR-------ARVYILKPLSTQEIERV 173

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
           ++    + E+       G     L +       +A    G  R+A   L  + D A  + 
Sbjct: 174 LQQAIDDPEN-------GLGKVRLDLQANLLSLLAEYVNGDARLALNCLEMMVDMAAESK 226

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMI-----ARNFGGGPVGIETISAGLSEP 292
              I                     LD   LT +     AR    G    + ISA     
Sbjct: 227 NGKI---------------------LDRTLLTEVLGERQARFDKQGDRFYDFISALHKSI 265

Query: 293 RDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           R +  D    +  +       P    R L+ IA + +G   P 
Sbjct: 266 RGSAPDAALYWYARIITAGGDPLYIARRLLAIASEDVGNADPR 308


>gi|300716072|ref|YP_003740875.1| polynucleotide ATPase [Erwinia billingiae Eb661]
 gi|299061908|emb|CAX59024.1| Putative polynucleotide ATPase protein [Erwinia billingiae Eb661]
          Length = 447

 Score =  154 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 76/326 (23%), Positives = 120/326 (36%), Gaps = 40/326 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP  L E+ GQ    +  K    A +A    L  ++  GPPG GKTTLA+++ R
Sbjct: 15  PLAARMRPAMLAEYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEIIGR 72

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
               +    S        I +A + A    +   R +LF+DE+HR +   ++   P +ED
Sbjct: 73  YGQADVERISAVTSGVKEIREAIERARQNRDAGRRTILFVDEVHRFNKSQQDAFLPHIED 132

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             +  +    E PS       LSR        RV LL +   +   I +     + +   
Sbjct: 133 GTITFIGATTENPSFELNSALLSR-------ARVYLLKSLTSEDIEIVLDQAMKDSD--- 182

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
               RG     + + +     IA    G  R A   L  + D AEV       RE+    
Sbjct: 183 ----RGYGKENIVLPEGTRRMIAELVNGDARRALNTLEMMADMAEVNSKGK--RELTAQL 236

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           L  ++ ++              AR    G    + ISA     R +  D    +  +   
Sbjct: 237 LNEVSGERS-------------ARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIIT 283

Query: 310 IQRTPR--GRLLMPIAWQHLGIDIPH 333
               P    R L+ IA + +G   P 
Sbjct: 284 AGGDPLYVARRLLAIASEDVGNADPR 309


>gi|238893953|ref|YP_002918687.1| recombination factor protein RarA [Klebsiella pneumoniae
           NTUH-K2044]
 gi|238546269|dbj|BAH62620.1| putative polynucleotide enzyme [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 447

 Score =  154 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 74/342 (21%), Positives = 115/342 (33%), Gaps = 42/342 (12%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M +     S N  Q     + +RP  L ++ GQ    +  K    A +A    L  ++  
Sbjct: 1   MSNLSLDFSDNAFQ--PLAARMRPENLAQYIGQQHLLAPGKPLPRAIEAGH--LHSMILW 56

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIH 115
           GPPG GKTTLA+V+AR    +    S        I +A + A    N   R +LF+DE+H
Sbjct: 57  GPPGTGKTTLAEVIARYASADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVH 116

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P +ED  +  +    E PS       LSR  +    +        + D 
Sbjct: 117 RFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLTTDDIEQVLD- 175

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                               RG     + + DE    IA    G  R A   L  + D A
Sbjct: 176 -------------QAMNDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMA 222

Query: 234 EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
           E   +     +      +         ++ D  Y               + ISA     R
Sbjct: 223 ESDDSGKRVLKAELLTEIAGERSARFDNKGDRFY---------------DLISALHKSVR 267

Query: 294 DAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +  D    +  +       P    R  + IA + +G   P 
Sbjct: 268 GSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPR 309


>gi|295092387|emb|CBK78494.1| Recombination protein MgsA [Clostridium cf. saccharolyticum K10]
          Length = 462

 Score =  154 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 71/343 (20%), Positives = 126/343 (36%), Gaps = 51/343 (14%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M++  +   N        S +RP +LEEF GQ        +     +   + +  ++F G
Sbjct: 1   MEQISMFD-NAPVYSPLASRMRPESLEEFFGQSHLLGEGMLLRNLIER--DQVSSMIFWG 57

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIH 115
           PPG+GKTTLA ++A      F + S  V +   ++  ++   E+      + V+F+DEIH
Sbjct: 58  PPGVGKTTLASIIANRTNAGFINFSA-VTSGIKEIREVMAKAEEARHRGMKTVVFVDEIH 116

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P +E   + L+    E PS       LSR  +             L   
Sbjct: 117 RFNKAQQDAFLPYVERGSIILIGATTENPSFEINSALLSRCRVFVLKELSREELTALLKH 176

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                               RG     + + +E    IA  + G  R A  +L       
Sbjct: 177 ALTSS---------------RGYGYLKVEIEEELLDMIARFAGGDARTALNVLEMAVTNG 221

Query: 234 EVAHAKT-ITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
           E+   +T ++RE+    + + +   DK G +  +L                   ISA   
Sbjct: 222 EIHGDRTVVSREVIKQCIGKKSLLYDKKGEEHYNL-------------------ISALHK 262

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
             R++  D    ++ +       P    R L+  A + +G+  
Sbjct: 263 SMRNSDPDAAVYWLERMLEAGEDPLYVARRLIRFASEDIGMAD 305


>gi|119383540|ref|YP_914596.1| recombination factor protein RarA [Paracoccus denitrificans PD1222]
 gi|119373307|gb|ABL68900.1| Recombination protein MgsA [Paracoccus denitrificans PD1222]
          Length = 442

 Score =  154 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 75/325 (23%), Positives = 120/325 (36%), Gaps = 50/325 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP  L +  GQ +           A   A +L  ++  GPPG+GKTT+A+++A+
Sbjct: 21  PLADRIRPARLSDVVGQDKVLGPDGPL--GAMLGAGSLSSLILWGPPGVGKTTIARLLAQ 78

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
           E  + F   S      P + K  D A L        +LF+DEIHR +   ++   P MED
Sbjct: 79  ETDLAFVQISAIFSGVPELRKVFDAARLRGQQGRGTLLFVDEIHRFNKAQQDSFLPHMED 138

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             + L+    E PS       LSR  +I              +R G+          DL+
Sbjct: 139 GTITLVGATTENPSFELNAALLSRAQVIVL------------ERLGLA---------DLE 177

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            + QR  +  G             R+      A   L  + D             + +  
Sbjct: 178 RLAQRAEQELG-------------RALPLTAEARDRLLEMAD-----GDGRTVLNLIEQV 219

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           +     DK+  +QL  R +  +A+    G      ISA     R +  D    ++ +   
Sbjct: 220 MAWKVKDKLDPEQLAQRLMRRVAKYDKSGDEHYNLISALHKSVRGSDPDAALYWLSRMLE 279

Query: 310 IQRTPR--GRLLMPIAWQHLGIDIP 332
               PR   R L  +A + +G+  P
Sbjct: 280 GGEDPRYLARRLTRMAIEDIGLADP 304


>gi|77360654|ref|YP_340229.1| recombination factor protein RarA [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76875565|emb|CAI86786.1| putative polynucleotide enzyme with nucleotide triphosphate
           hydrolase domain [Pseudoalteromonas haloplanktis TAC125]
          Length = 447

 Score =  154 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 71/328 (21%), Positives = 111/328 (33%), Gaps = 45/328 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP TL+E+ GQ    S  K   +A  A       ++  GPPG+GKTTLAQ++A 
Sbjct: 14  PLAARMRPTTLDEYIGQQHLLSADKPLHQAIVA--GRCHSLILWGPPGVGKTTLAQIIAN 71

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAM 129
                    S  V A   D+   +T           R ++F+DE+HR +   ++   P +
Sbjct: 72  HADAALIQMSA-VTAGVKDIRDSVTQARENLQSRGQRTLMFVDEVHRFNKSQQDAFLPHI 130

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ED     +    E PS       LSR  +    +                   + Y + D
Sbjct: 131 EDGTFIFVGATTENPSFALNNAILSRARVYVLKSLA---------------NTDLYTVID 175

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
                        + + D A   +   S G  R    LL +  D     + +    E   
Sbjct: 176 RALKQDEQLNQKHIIIADNAKKALCQASGGDARKVLNLLEQAVDLTTEQNGQYNVDEHV- 234

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
                          L     T +A+   GG    + ISA     R +  D    +  + 
Sbjct: 235 ---------------LSQVLPTHLAKYDKGGDEFYDLISAFHKSVRGSSPDGALYWYCRI 279

Query: 308 GFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                 P    R L+ IA + +G   P 
Sbjct: 280 LAGGGDPLYVARRLLAIATEDIGNADPR 307


>gi|319405871|emb|CBI79503.1| ATPase, AAA family [Bartonella sp. AR 15-3]
          Length = 439

 Score =  154 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 85/340 (25%), Positives = 127/340 (37%), Gaps = 59/340 (17%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
              +V+Q       +RPR L E  GQ             A   + +   ++F GPPG GK
Sbjct: 10  FDSSVNQNRPLAERMRPRFLHEVVGQNHLIGAEGFLSRMA--ASGSFSSMIFWGPPGTGK 67

Query: 68  TTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           TT+A+++A E    F   S        + K  ++A        + +LFIDEIHR +   +
Sbjct: 68  TTIARLLALETNFAFEQVSAIFTGISELKKIFEVARARLMSGCQTLLFIDEIHRFNRAQQ 127

Query: 123 EILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +     MED  + L+    E PS       LSR  ++   T                   
Sbjct: 128 DSFLSFMEDGTIILVGATTENPSFELNAALLSRVRILTFHT------------------- 168

Query: 181 NFYEIEDLKTIVQRGAKLTG--LAVTDEAACEIAMRSRGTPRIAGRLLR---RVRDFAEV 235
             ++ E L+ +++R  K+ G  L + D+A   +   S G  R A  L     RV    EV
Sbjct: 169 --HDNESLEILLKRAEKMEGRALPLDDQAREILIRMSDGDARAALTLAEEIWRVAQSEEV 226

Query: 236 AHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDA 295
            +AKT+   I   A      DK      DL                   ISA     R +
Sbjct: 227 FNAKTLQAVIQRRA---PIYDKGRDSHYDL-------------------ISALQKSVRGS 264

Query: 296 IEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
             D    Y+ +       P   GR L+ IA + +G+  P 
Sbjct: 265 DPDAALYYLARMFDAGEDPLYIGRRLVRIAIEDIGLADPQ 304


>gi|238753492|ref|ZP_04614855.1| Replication-associated recombination protein A [Yersinia ruckeri
           ATCC 29473]
 gi|238708445|gb|EEQ00800.1| Replication-associated recombination protein A [Yersinia ruckeri
           ATCC 29473]
          Length = 447

 Score =  154 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 73/337 (21%), Positives = 117/337 (34%), Gaps = 42/337 (12%)

Query: 8   LSRNVSQED--ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           LS + SQ +     + +RP TL E+ GQ    +  K    A +A    L  ++  GPPG 
Sbjct: 4   LSLDFSQNEFQPLAARMRPLTLAEYIGQQHLLAPGKPLPRAIEAGQ--LHSMILWGPPGT 61

Query: 66  GKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GKTTLA+++ R    +    S        I +A + A    +   R +LF+DE+HR +  
Sbjct: 62  GKTTLAEIIGRYGQADVERISAVTSGIKEIREAIERARQNRDAGRRTILFVDEVHRFNKS 121

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++   P +ED  +  +    E PS       LSR  +             + D+     
Sbjct: 122 QQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKALTAADIEKVIDQAMFDS 181

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
                          RG     + + DE    ++    G  R A   L  + D AEV  +
Sbjct: 182 P--------------RGLGGQNIKLLDETRRMMSELVGGDARRALNSLEMMADMAEVDAS 227

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
                       +         ++ D  Y               + ISA     R +  D
Sbjct: 228 GVRVLTPELLKEVSGERSARFDNKGDRYY---------------DLISALHKSVRGSAPD 272

Query: 299 LIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
               +  +       P    R L+ IA + +G   P 
Sbjct: 273 AALYWYARIITAGGDPLYVARRLLAIASEDVGNADPR 309


>gi|91209937|ref|YP_539923.1| recombination factor protein RarA [Escherichia coli UTI89]
 gi|117623076|ref|YP_851989.1| recombination factor protein RarA [Escherichia coli APEC O1]
 gi|218557800|ref|YP_002390713.1| recombination factor protein RarA [Escherichia coli S88]
 gi|237707118|ref|ZP_04537599.1| recombination factor protein RarA [Escherichia sp. 3_2_53FAA]
 gi|91071511|gb|ABE06392.1| putative polynucleotide enzyme [Escherichia coli UTI89]
 gi|115512200|gb|ABJ00275.1| putative polynucleotide enzyme [Escherichia coli APEC O1]
 gi|218364569|emb|CAR02255.1| recombination protein [Escherichia coli S88]
 gi|226898328|gb|EEH84587.1| recombination factor protein RarA [Escherichia sp. 3_2_53FAA]
 gi|281178026|dbj|BAI54356.1| putative polynucleotide enzyme [Escherichia coli SE15]
 gi|294490173|gb|ADE88929.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           IHE3034]
 gi|307627678|gb|ADN71982.1| recombination factor protein RarA [Escherichia coli UM146]
 gi|320196612|gb|EFW71235.1| recombination factor protein RarA [Escherichia coli WV_060327]
 gi|323953398|gb|EGB49264.1| ATPase [Escherichia coli H252]
 gi|323958199|gb|EGB53908.1| ATPase [Escherichia coli H263]
          Length = 447

 Score =  154 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 73/331 (22%), Positives = 116/331 (35%), Gaps = 50/331 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP  L ++ GQ    +  K    A +A    L  ++  GPPG GKTTLA+V+AR
Sbjct: 15  PLAARMRPENLAQYIGQQHLLAVGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIAR 72

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
               +    S        I +A + A    N   R +LF+DE+HR +   ++   P +ED
Sbjct: 73  YANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED 132

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATT-----RVGLLTNPLQDRFGIPIRLNFYE 184
             +  +    E PS       LSR  +    +        +LT  ++D+           
Sbjct: 133 GTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDK----------- 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
                    RG     + + DE    IA    G  R A   L  + D AEV  +     +
Sbjct: 182 --------TRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLK 233

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
                 +         ++ D  Y               + ISA     R +  D    + 
Sbjct: 234 PELLTEIAGERSARFDNKGDRFY---------------DLISALHKSVRGSAPDAALYWY 278

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +       P    R  + IA + +G   P 
Sbjct: 279 ARIITAGGDPLYVARRCLAIASEDVGNADPR 309


>gi|293392025|ref|ZP_06636359.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290952559|gb|EFE02678.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 446

 Score =  154 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 73/343 (21%), Positives = 124/343 (36%), Gaps = 55/343 (16%)

Query: 8   LSRNVSQED--ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            S + ++ D     + +RP TL ++ GQ       K   +A +A    +  ++F GPPG 
Sbjct: 4   FSFDFNENDFRPLAARMRPTTLAQYCGQSHLLGEGKPLRKAIEA--GYVHSMIFWGPPGT 61

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSI 119
           GKTTLA++++  +       S  V +   ++   +   +       R +LF+DE+HR + 
Sbjct: 62  GKTTLAEIISHRINAEVERISA-VTSGIKEIREAIDKAKQNKLAGLRTILFVDEVHRFNK 120

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             ++   P +ED  +  +    E PS       LSR        RV +L           
Sbjct: 121 SQQDAFLPHIEDGTIIFIGATTENPSFELNNALLSR-------ARVYILKPLSAQEIERV 173

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
           ++    + E+       G     L + +     +A    G  R+A   L  + D A  + 
Sbjct: 174 LQQAIDDPEN-------GLGKVRLNLQENLLSLLAEYVNGDARLALNCLEMMVDMAGESE 226

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMI-----ARNFGGGPVGIETISAGLSEP 292
              I                     LD   LT +     AR    G +  + ISA     
Sbjct: 227 NGKI---------------------LDRTLLTEVLGERQARFDKQGDLFYDFISALHKSI 265

Query: 293 RDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           R +  D    +  +       P    R L+ IA + +G   P 
Sbjct: 266 RGSAPDAALYWYARIITAGGEPLYVARRLLAIASEDVGNADPR 308


>gi|15602122|ref|NP_245194.1| recombination factor protein RarA [Pasteurella multocida subsp.
           multocida str. Pm70]
 gi|12720486|gb|AAK02341.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 445

 Score =  154 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 73/327 (22%), Positives = 119/327 (36%), Gaps = 43/327 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP T  ++ GQ       K   +A  A    +  ++  GPPG GKTTLA+++A 
Sbjct: 15  PLAARMRPTTFAQYCGQSHLIGEGKPLRKALDAGH--VHSMILWGPPGTGKTTLAEIIAH 72

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
           ++  +    S        I +A + A      E R +LF+DE+HR +   ++   P +ED
Sbjct: 73  QIHADVERISAVTSGIKEIREAIERAKENRLAERRTILFVDEVHRFNKSQQDAFLPHIED 132

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             +  +    E PS       LSR        +V +L +         ++    + E   
Sbjct: 133 GTIIFIGATTENPSFELNNALLSR-------AKVYILKSLSTQEITEVLKQALLDEE--- 182

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
               RG       + +     +A    G  R+A   L  + D AE   A          A
Sbjct: 183 ----RGLGKVRFVLEENVLECLAEYVNGDARLALNSLELMADMAEETEAG--------KA 230

Query: 250 LLRLAI-DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           L    + + +G  Q         AR    G    + ISA     R +  D    +  +  
Sbjct: 231 LTLSLLKNVLGERQ---------ARFDKQGDRFYDAISALHKSVRGSAPDAALYWYARIL 281

Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIPH 333
                P    R L+ IA + +G   P 
Sbjct: 282 AAGGDPLYVARRLLAIASEDVGNADPR 308


>gi|88807186|ref|ZP_01122698.1| putative ATPase, AAA family protein [Synechococcus sp. WH 7805]
 gi|88788400|gb|EAR19555.1| putative ATPase, AAA family protein [Synechococcus sp. WH 7805]
          Length = 759

 Score =  154 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 83/341 (24%), Positives = 131/341 (38%), Gaps = 47/341 (13%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           RE LL R     D     LRPR L+EF GQ    +  ++   A  A  + + +++  GPP
Sbjct: 36  REALLRRQAPLAD----RLRPRNLDEFVGQGAILAEGRLLRRAIAA--DRVGNLILHGPP 89

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHR 116
           G+GKTTLA+++A     +F S +  V+A   DL A ++    R        +LFIDE+HR
Sbjct: 90  GVGKTTLARIIANHTRAHFSSLNA-VLAGVKDLRAEVSEAGQRLERHGLRTILFIDEVHR 148

Query: 117 LSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRF 174
            +   ++ L P +E+  L L+    E P     K  +SR  L    T      N L D  
Sbjct: 149 FNSAQQDALLPWVENGTLTLIGATTENPYFEVNKALVSRSRLFRLQTLTPEDLNKLLD-- 206

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
                             +RG     + +  EAA  +   + G  R     L    +   
Sbjct: 207 ------------SALKDPERGYGGRNIKLEPEAAAHLVDVASGDARSLLNALELAVESTP 254

Query: 235 VAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRD 294
                 I  ++  A        +    Q  + Y          G    +TISA +   R 
Sbjct: 255 ADDNGVIRIDLGIA--------EESIQQRAVLY-------DKQGDAHFDTISAFIKSIRG 299

Query: 295 AIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +  D    ++ +       PR   R ++  A + +G+  P 
Sbjct: 300 SDADATLFWLARMIEAGENPRFIFRRMLISAGEDVGLADPQ 340


>gi|255019842|ref|ZP_05291918.1| ATPase, AAA family [Acidithiobacillus caldus ATCC 51756]
 gi|254970771|gb|EET28257.1| ATPase, AAA family [Acidithiobacillus caldus ATCC 51756]
          Length = 437

 Score =  154 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 78/331 (23%), Positives = 121/331 (36%), Gaps = 43/331 (12%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           S      + +RPR+L EF GQ            AA  R ++L  ++F GPPG+GKTTLA 
Sbjct: 4   SDSRPLAARMRPRSLAEFIGQERLLGPAGPI--AAMLRQKSLHSLVFWGPPGVGKTTLAH 61

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILY 126
           ++A E G    + S  V +   +L A      +R       VLFIDEIHR +   ++ L 
Sbjct: 62  LLAAEQGAEVLTLSA-VDSGVRELRAAAAVATERRGRGESTVLFIDEIHRFNKTQQDALL 120

Query: 127 PAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           P +E+  L L+    E PS   V   LSR  +             + +R           
Sbjct: 121 PHLEEGTLTLIGATTENPSFALVGALLSRIRIYVLEPLGQEALAAILERS---------- 170

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
                   +RG     + + D A  ++  ++ G  R    +L      A +   +     
Sbjct: 171 ----LHDRERGLGDLAVELPDSARAQLLAQADGDARRLLNILDLAVQLAPLHDGRRRLDT 226

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
              AA    A                      GG    + ISA     R +  D    ++
Sbjct: 227 PVLAAAAGQAW----------------RHFDKGGEHFYDEISALHKSLRGSDVDASLYWL 270

Query: 305 IQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
            +       P    R L+ +A + +G+  P 
Sbjct: 271 ARMLDGGADPLYLARRLIRVAVEDVGLADPR 301


>gi|332829214|gb|EGK01878.1| hypothetical protein HMPREF9455_02026 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 422

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 76/336 (22%), Positives = 126/336 (37%), Gaps = 65/336 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRPRTL+E+ GQ        +  +  +  +  +   L  GPPG+GKTTLAQ++A 
Sbjct: 4   PLAERLRPRTLDEYIGQKHLVGEGAILRKMIE--SGRIPSFLLWGPPGVGKTTLAQIIAN 61

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAM 129
            L   F + S  + +   D+  ++   +          +LFIDEIHR S   ++ L  A+
Sbjct: 62  TLDTPFYTLSA-INSGVKDVREVIEQAKKSQFFNTKSPILFIDEIHRFSKSQQDSLLNAV 120

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E   + L+    E PS   ++  LSR  +    +                      + +D
Sbjct: 121 ETGVITLIGATTENPSFEVIRPLLSRCQVYVLQS---------------------LDKDD 159

Query: 188 LKTIVQRG------AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           L  +  R        K   + + +  A      S G  R    +L  V   A+V+    I
Sbjct: 160 LIELAHRAVTQDIILKERNVELQETNAL--LRFSGGDARKLLNILDLV-TGADVSDKIVI 216

Query: 242 TREIADAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           T ++    L     A DK G    D+                   ISA +   R +  D 
Sbjct: 217 TDKLVTERLQENPAAYDKGGEMHYDI-------------------ISAFIKSIRGSDPDA 257

Query: 300 IEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
              ++ +       P+   R L+  A + +G+  P+
Sbjct: 258 AIYWLARMVAGGEDPKFIARRLVISAAEDIGLANPN 293


>gi|33152375|ref|NP_873728.1| recombination factor protein RarA [Haemophilus ducreyi 35000HP]
 gi|33148598|gb|AAP96117.1| conserved hypothetical protein [Haemophilus ducreyi 35000HP]
          Length = 446

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 76/331 (22%), Positives = 118/331 (35%), Gaps = 51/331 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RPR L ++ GQ       K    A +A       ++  GPPG GKTTLA+++A+
Sbjct: 14  PLAAKMRPRCLADYIGQSHLLGKDKPLRRAIEAGYA--HSMILWGPPGTGKTTLAEIIAQ 71

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
                    S        I +A + A        + +LF+DE+HR +   ++   P +ED
Sbjct: 72  HFDAEVERLSAVTSGVKEIREAIEQAKYNRQAGRKTLLFVDEVHRFNKSQQDAFLPYIED 131

Query: 132 FQLDLM--VGEGPSARSVKINLSR-----FTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
             +  +    E PS       LSR        + A     +L N LQD+           
Sbjct: 132 GTVIFIGATTENPSFELNNALLSRARIYLLKPLQADEIEQILQNALQDK----------- 180

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
                   Q G       + DE    +A    G  R A   L  + D AE +       +
Sbjct: 181 --------QNGLGQEHFILADEVLKLLADYVNGDARYALNCLALMADMAESSPQG----K 228

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           + + ALL   + +              AR   GG    + ISA     R +  D    + 
Sbjct: 229 VLNQALLIAVLGERN------------ARFDKGGDHYYDLISALHKSIRGSAVDAALYWY 276

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +       P    R L+ IA + +G   P 
Sbjct: 277 ARILTAGGDPLYVARRLLAIASEDIGNADPR 307


>gi|110634002|ref|YP_674210.1| recombination factor protein RarA [Mesorhizobium sp. BNC1]
 gi|110284986|gb|ABG63045.1| Recombination protein MgsA [Chelativorans sp. BNC1]
          Length = 440

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 80/345 (23%), Positives = 123/345 (35%), Gaps = 53/345 (15%)

Query: 1   MMDREGLLSRNVSQE--DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M D       +   E        LRP+ L+E  GQ                R+ +L  ++
Sbjct: 1   MSDLFNRSEPHAPAEVGKPLADRLRPKRLDEVVGQEHLTGPEGALTRMI--RSGSLGSLV 58

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDE 113
           F GPPG GKTT+A+++A E  + F   S        + K  + A L  +   + +LF+DE
Sbjct: 59  FWGPPGTGKTTVARLLAGETSMAFEQISAIFSGVADLKKVFEAARLRRSQGRQTLLFVDE 118

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++   P MED  + L+    E PS       LSR                  
Sbjct: 119 IHRFNRAQQDSFLPVMEDGTVVLVGATTENPSFELNAALLSR------------------ 160

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
                 +  +  E   L+ ++QR             A E   R       A  +L R+ D
Sbjct: 161 ---ARVLVFHSLEANSLENLLQR-------------AEEAEGRKLPLTEEARAVLLRMAD 204

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVG-IETISAGLS 290
             +     T+  E+  AA      D         R +   A  +  G  G    ISA   
Sbjct: 205 -GDGRAVLTLAEEVWRAANEGEVFDAEALQ----RIVQRPAPIYDKGQDGYYNLISALHK 259

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
             R +  D    Y+ +       P   GR L+ +A + +G+  P 
Sbjct: 260 SVRGSDPDAALYYLCRMFDAGEDPLYLGRRLVRMAVEDIGLADPQ 304


>gi|160885966|ref|ZP_02066969.1| hypothetical protein BACOVA_03971 [Bacteroides ovatus ATCC 8483]
 gi|156108779|gb|EDO10524.1| hypothetical protein BACOVA_03971 [Bacteroides ovatus ATCC 8483]
          Length = 423

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 80/334 (23%), Positives = 128/334 (38%), Gaps = 61/334 (18%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP+TL+E+ GQ        +  +   A    +   +  GPPG+GKTTLAQ++A 
Sbjct: 3   PLAERLRPKTLDEYIGQKHLVGPGAILRKMIDA--GRISSFILWGPPGVGKTTLAQIIAN 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAM 129
           +L   F + S  V +   D+  ++   +          +LFIDEIHR S   ++ L  A+
Sbjct: 61  KLETPFYTLSA-VTSGVKDVREVIDRAKSNRFFSQSSPILFIDEIHRFSKSQQDSLLGAV 119

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E+  + L+    E PS   ++  LSR  L    +                      E ED
Sbjct: 120 ENGTVTLIGATTENPSFEVIRPLLSRCQLYVLKS---------------------LEKED 158

Query: 188 LKTIVQRG----AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           L+ ++QR     A L    +  +    +   S G  R    +L  V   +E      IT 
Sbjct: 159 LQELLQRAITTDAILKERKIELKETTAMLRFSGGDARKLLNILELVVQ-SETEETVVITD 217

Query: 244 EIADAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           E+    L +   A DK G    D+                   ISA +   R +  D   
Sbjct: 218 EMVTERLQQNPLAYDKDGEMHYDI-------------------ISAFIKSIRGSDPDGAI 258

Query: 302 PYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            ++ +       P    R L+  A + +G+  P+
Sbjct: 259 YWLARMVEGGEDPAFIARRLVISASEDIGLANPN 292


>gi|91793101|ref|YP_562752.1| recombination factor protein RarA [Shewanella denitrificans OS217]
 gi|91715103|gb|ABE55029.1| Recombination protein MgsA [Shewanella denitrificans OS217]
          Length = 443

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 75/327 (22%), Positives = 113/327 (34%), Gaps = 47/327 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RPR L E+ GQ       K    A +A       +L  GPPG GKTTLA+++A 
Sbjct: 14  PLAARMRPRVLSEYIGQSHLLGEGKALRVALEANRA--HSMLLWGPPGTGKTTLAELIAH 71

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAM 129
               +    S  V +   D+ A +   +        R +LF+DE+HR +   ++   P +
Sbjct: 72  YANAHVERISA-VSSGVKDIRAAIEQAKAVAQSRGQRTLLFVDEVHRFNKSQQDAFLPYI 130

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ED  +  +    E PS       LSR  +         L + L +     I +   E   
Sbjct: 131 EDGTVIFVGATTENPSFELNNALLSRARV--------YLIHKLTETEITEIIIQALE--- 179

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
                +RG     L +  E   E+   S G  R A  L+  + D      A  +      
Sbjct: 180 ---DTERGLGKRQLIIPPEVMAELTHVSDGDARKALNLIELMSDLVADGDAVNLEMLSQV 236

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
                   DK G    DL                   ISA     R +  D    +  + 
Sbjct: 237 VGHKAAGYDKNGDQFYDL-------------------ISAVHKSIRGSAPDAALYWFCRI 277

Query: 308 GFIQRTPR--GRLLMPIAWQHLGIDIP 332
                 P    R L+ IA + +G   P
Sbjct: 278 LEGGGDPLYVARRLLAIASEDIGNADP 304


>gi|56459774|ref|YP_155055.1| recombination factor protein RarA [Idiomarina loihiensis L2TR]
 gi|56178784|gb|AAV81506.1| Uncharacterized ATPase related to the helicase subunit of the
           Holliday junction resolvase [Idiomarina loihiensis L2TR]
          Length = 446

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 73/328 (22%), Positives = 117/328 (35%), Gaps = 46/328 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RPRT++E+ GQ    +  K    A +     L  ++  GPPG GKTTLA+++A 
Sbjct: 14  PLAARMRPRTVDEYVGQQHLLAPGKPLRVAVEQGH--LHSMILWGPPGTGKTTLAELIAT 71

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAM 129
           +        S  V +   D+   +   +        R +LF+DE+HR +   ++   P +
Sbjct: 72  QANATVSRISA-VTSGVKDIRKAIEEAKLLAQQQGRRTILFVDEVHRFNKSQQDAFLPHI 130

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ED  +  +    E P        LSR  +    T                       +E 
Sbjct: 131 EDGTIVFIGATTENPGFELNNALLSRARVYRLQTLSKTDLEQ--------------ALES 176

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
             T  +RG     L +  EA  ++   + G  R     L  V DF E +     T E+  
Sbjct: 177 ALTDAERGLGQRQLQLEGEARAKLLDLAGGDARRLLNYLEVVADFVESSSQPI-TPELIT 235

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           AA+   A     FD     Y               + +SA     R +  D    +  + 
Sbjct: 236 AAIGEKAT---AFDHQGDHY--------------YDVLSAFHKSVRGSSPDGALYWYARL 278

Query: 308 --GFIQRTPRGRLLMPIAWQHLGIDIPH 333
             G        R L+ IA + +G   P 
Sbjct: 279 LTGGGDALVIARRLLAIASEDIGNADPR 306


>gi|323344318|ref|ZP_08084544.1| AAA family ATPase [Prevotella oralis ATCC 33269]
 gi|323095047|gb|EFZ37622.1| AAA family ATPase [Prevotella oralis ATCC 33269]
          Length = 424

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 78/331 (23%), Positives = 126/331 (38%), Gaps = 53/331 (16%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +     +RPRTL+E+ GQ        V  +   A    +   +  GPPG+GKTTLAQ++A
Sbjct: 3   EPLAERMRPRTLDEYVGQQHLVGEGAVLRKMIDA--GRVSSFILWGPPGVGKTTLAQIIA 60

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPA 128
            +L   F + S  V +   D+   +   +          +LFIDEIHR S   ++ L  A
Sbjct: 61  NKLETPFYTLSA-VTSGVKDVRDAIERAKSNKFFNTASPILFIDEIHRFSKSQQDSLLGA 119

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           +E   + L+    E PS   ++  LSR  L    +        L +R             
Sbjct: 120 VERGVVTLIGATTENPSFEVIRPLLSRCQLYVLKSLEKEDLLSLLER------------- 166

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
            +   V+   +   + + +  A  I   S G  R    +L  V + A     +  T E+ 
Sbjct: 167 AVTQDVE--LRKKHILLKETGA--ILRYSGGDARKLLNILELVVESANSETIEI-TDEVV 221

Query: 247 DAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
              L +   A DK G    D+                   ISA +   R +  D    +M
Sbjct: 222 VNRLQQNPLAYDKDGEMHYDI-------------------ISAFIKSIRGSDPDAALYWM 262

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +       P+   R L+  A + +G+  P+
Sbjct: 263 ARMIEGGEDPQFIARRLVISAAEDIGLANPN 293


>gi|332306867|ref|YP_004434718.1| AAA ATPase central domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332174196|gb|AEE23450.1| AAA ATPase central domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 445

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 67/328 (20%), Positives = 114/328 (34%), Gaps = 48/328 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP+ + ++ GQ       K    A +        ++  GPPG GKTTLA+++A 
Sbjct: 17  PLAARMRPQNIAQYFGQQHIVGEGKPLRSAIERGQ--CHSMILWGPPGTGKTTLAEIIAM 74

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAM 129
               +    S  V +   D+ + +   +        R +LF+DE+HR +   ++   P +
Sbjct: 75  HCDAHIERISA-VTSGVKDIRSAIEQAKQNALSQAKRTILFVDEVHRFNKSQQDAFLPFI 133

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ED  +  +    E PS       LSR        RV +L +  QD      +        
Sbjct: 134 EDGTITFIGATTENPSFELNGALLSR-------ARVYVLKSLTQDDLTDIAKQAL----- 181

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
                 RG     L + D+    +   + G  R     +    DF+       I+ E   
Sbjct: 182 --EDKTRGLGRLSLHIEDKGIDLLTELAGGDARRLLNYIELAADFSS---EGHISLEAIK 236

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
            A+                    +A+   GG    + ISA     R +  D    +  + 
Sbjct: 237 EAVGEK-----------------VAQYDKGGDQFYDLISAFHKSVRGSSPDGALYWYARM 279

Query: 308 GFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                 P    R L+ IA + +G   P 
Sbjct: 280 LNAGCDPLYVARRLLAIATEDIGNADPR 307


>gi|196228384|ref|ZP_03127251.1| AAA ATPase central domain protein [Chthoniobacter flavus Ellin428]
 gi|196227787|gb|EDY22290.1| AAA ATPase central domain protein [Chthoniobacter flavus Ellin428]
          Length = 426

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 78/323 (24%), Positives = 127/323 (39%), Gaps = 43/323 (13%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR+LEE+ GQ    +  K+   A +A  + +  ++  GPPG GKTTLA+++A      
Sbjct: 1   MRPRSLEEYAGQEHILAPGKLLRRAIEA--DRISSIILFGPPGTGKTTLAEIIASATQSR 58

Query: 82  FRSTSGPVIAKAGDLAAL-------LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           F   SG V +   DL  +       LTN  ++ +LFIDEIHR +   +++L P +E   +
Sbjct: 59  FERLSG-VESNVADLRRVIATAANRLTNKGEKTILFIDEIHRWNKAQQDVLLPDVERGTV 117

Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            L+      P        +SR  +             LQ R                T  
Sbjct: 118 RLIGATTHNPFYYINSPLVSRSQVFQLEPLTPADLVKLQKR--------------ALTDE 163

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           +RG     + V +EA   +A  + G  R     L       E   A  I  + A+A    
Sbjct: 164 ERGFGKMKIEVAEEALLHLATVADGDARKCLNALEIAVVTTEPDKAGVIHIDRANA---- 219

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
               +    +  + Y         G     +TISA +   R +  D    ++ +  +   
Sbjct: 220 ----EESIQKKAVVY-------DAGDDQHYDTISAFIKSVRGSDPDAALYWLAKMLYAGE 268

Query: 313 TPR--GRLLMPIAWQHLGIDIPH 333
             R   R L+ +A + +G+  P 
Sbjct: 269 DIRFLARRLVILASEDIGMADPQ 291


>gi|215486022|ref|YP_002328453.1| recombination factor protein RarA [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312969040|ref|ZP_07783247.1| ATPase family associated with various cellular activities (AAA)
           family protein [Escherichia coli 2362-75]
 gi|215264094|emb|CAS08436.1| recombination protein [Escherichia coli O127:H6 str. E2348/69]
 gi|312286442|gb|EFR14355.1| ATPase family associated with various cellular activities (AAA)
           family protein [Escherichia coli 2362-75]
          Length = 447

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 73/331 (22%), Positives = 116/331 (35%), Gaps = 50/331 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP  L ++ GQ    +  K    A +A    L  ++  GPPG GKTTLA+V+AR
Sbjct: 15  PLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIAR 72

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
               +    S        I +A + A    N   R +LF+DE+HR +   ++   P +ED
Sbjct: 73  YANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED 132

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATT-----RVGLLTNPLQDRFGIPIRLNFYE 184
             +  +    E PS       LSR  +    +        +LT  ++D+           
Sbjct: 133 GTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDK----------- 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
                    RG     + + DE    IA    G  R A   L  + D AEV  +     +
Sbjct: 182 --------TRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLK 233

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
                 +         ++ D  Y               + ISA     R +  D    + 
Sbjct: 234 PELLTEIAGERSARFDNKGDRFY---------------DLISALHKSVRGSAPDAALYWY 278

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +       P    R  + IA + +G   P 
Sbjct: 279 ARIITAGGDPLYVARRCLAIASEDVGNADPR 309


>gi|118594713|ref|ZP_01552060.1| recombination protein [Methylophilales bacterium HTCC2181]
 gi|118440491|gb|EAV47118.1| recombination protein [Methylophilales bacterium HTCC2181]
          Length = 433

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 65/334 (19%), Positives = 123/334 (36%), Gaps = 63/334 (18%)

Query: 17  ADISLLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
               +LRP+ + +  GQ+E       LKV IE      ++L  ++  GPPG+GKT++A V
Sbjct: 8   PLAEILRPKNVHDIVGQIELLGEGQSLKVAIE-----GKSLPSMILWGPPGVGKTSIAHV 62

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILY 126
           ++  +   F S S  V++   ++   +   +          +LF+DE+HR +   ++   
Sbjct: 63  ISNCIDAEFLSISA-VLSGVKEIREAIEKAQFMKEHQQRNTILFVDEVHRFNKSQQDAFL 121

Query: 127 PAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           P +E   +  +    E PS       LSR  +                            
Sbjct: 122 PHIESGLITFIGATTENPSFEVNSALLSRCQVYVLKA---------------------LN 160

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAAC-EIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            ++L++I+ +  KL      +E A   +   + G  R    L+  +       ++     
Sbjct: 161 EKELESILDKALKLYPERSINEGARNLVVTYADGDARKLINLVEMLLSSHAADNSS---- 216

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTM--IARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
                            D+LD++ +      R   GG    + ISA     R +  D   
Sbjct: 217 ---------------AIDELDVKKIVADKTRRFDKGGDQFYDQISALHKSVRGSDPDAAL 261

Query: 302 PYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
            ++ +       P    R ++ IA + +G+  P 
Sbjct: 262 YWLFKMLDGGADPLYLSRRIIRIAIEDIGLADPR 295


>gi|24112267|ref|NP_706777.1| recombination factor protein RarA [Shigella flexneri 2a str. 301]
 gi|30062379|ref|NP_836550.1| recombination factor protein RarA [Shigella flexneri 2a str. 2457T]
 gi|24051119|gb|AAN42484.1| putative polynucleotide enzyme [Shigella flexneri 2a str. 301]
 gi|30040625|gb|AAP16356.1| putative polynucleotide enzyme [Shigella flexneri 2a str. 2457T]
 gi|281600220|gb|ADA73204.1| putative polynucleotide enzyme [Shigella flexneri 2002017]
 gi|313650196|gb|EFS14608.1| ATPase family associated with various cellular activities (AAA)
           family protein [Shigella flexneri 2a str. 2457T]
 gi|332762947|gb|EGJ93197.1| ATPase family associated with various cellular activities family
           protein [Shigella flexneri K-671]
 gi|332768070|gb|EGJ98256.1| recombination factor [Shigella flexneri 2930-71]
 gi|333006695|gb|EGK26194.1| ATPase family associated with various cellular activities family
           protein [Shigella flexneri VA-6]
 gi|333021033|gb|EGK40291.1| ATPase family associated with various cellular activities family
           protein [Shigella flexneri K-304]
          Length = 447

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 72/331 (21%), Positives = 116/331 (35%), Gaps = 50/331 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP  L ++ GQ    +  K    A +A    L  ++  GPPG GKTTLA+V+AR
Sbjct: 15  PLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIAR 72

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
               +    S        I +A + A    N   R +LF+DE+HR +   ++   P +ED
Sbjct: 73  YANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED 132

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATT-----RVGLLTNPLQDRFGIPIRLNFYE 184
             +  +    E PS       LSR  +    +        +LT  ++D+           
Sbjct: 133 GTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDK----------- 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
                    RG     + + D+    IA    G  R A   L  + D AEV  +     +
Sbjct: 182 --------TRGYGGQDIVLPDDTRRAIAELVNGDARRALNTLEMMADMAEVYDSGKRVLK 233

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
                 +         ++ D  Y               + ISA     R +  D    + 
Sbjct: 234 PELLTEIAGERSARFDNKGDRFY---------------DLISALHKSVRGSAPDAALYWY 278

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +       P    R  + IA + +G   P 
Sbjct: 279 ARIITAGGDPLYVARRCLAIASEDVGNADPR 309


>gi|218700590|ref|YP_002408219.1| recombination factor protein RarA [Escherichia coli IAI39]
 gi|218370576|emb|CAR18383.1| recombination protein [Escherichia coli IAI39]
          Length = 447

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 73/331 (22%), Positives = 116/331 (35%), Gaps = 50/331 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP  L ++ GQ    +  K    A +A    L  ++  GPPG GKTTLA+V+AR
Sbjct: 15  PLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIAR 72

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
               +    S        I +A + A    N   R +LF+DE+HR +   ++   P +ED
Sbjct: 73  YANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED 132

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATT-----RVGLLTNPLQDRFGIPIRLNFYE 184
             +  +    E PS       LSR  +    +        +LT  ++D+           
Sbjct: 133 GTITFIGATTENPSFELNSALLSRARVYLLKSLSTKDIEQVLTQAMEDK----------- 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
                    RG     + + DE    IA    G  R A   L  + D AEV  +     +
Sbjct: 182 --------TRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLK 233

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
                 +         ++ D  Y               + ISA     R +  D    + 
Sbjct: 234 PELLTEIAGERSARFDNKGDRFY---------------DLISALHKSVRGSAPDAALYWY 278

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +       P    R  + IA + +G   P 
Sbjct: 279 ARIITAGGDPLYVARRCLAIASEDVGNADPR 309


>gi|256020980|ref|ZP_05434845.1| recombination factor protein RarA [Shigella sp. D9]
 gi|332282205|ref|ZP_08394618.1| recombination protein [Shigella sp. D9]
 gi|332104557|gb|EGJ07903.1| recombination protein [Shigella sp. D9]
          Length = 447

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 73/331 (22%), Positives = 116/331 (35%), Gaps = 50/331 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP  L ++ GQ    +  K    A +A    L  ++  GPPG GKTTLA+V+AR
Sbjct: 15  PLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIAR 72

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
               +    S        I +A + A    N   R +LF+DE+HR +   ++   P +ED
Sbjct: 73  YANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED 132

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATT-----RVGLLTNPLQDRFGIPIRLNFYE 184
             +  +    E PS       LSR  +    +        +LT  ++D+           
Sbjct: 133 GTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDK----------- 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
                    RG     + + DE    IA    G  R A   L  + D AEV  +     +
Sbjct: 182 --------TRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLK 233

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
                 +         ++ D  Y               + ISA     R +  D    + 
Sbjct: 234 PELLTEIAGERSARFDNKGDRFY---------------DLISALHKSVRGSAPDAALYWY 278

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +       P    R  + IA + +G   P 
Sbjct: 279 ARIITAGGDPLYVARRCLAIASEDVGNADPR 309


>gi|237712129|ref|ZP_04542610.1| recombination factor protein RarA [Bacteroides sp. 9_1_42FAA]
 gi|229453450|gb|EEO59171.1| recombination factor protein RarA [Bacteroides sp. 9_1_42FAA]
          Length = 425

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 75/330 (22%), Positives = 120/330 (36%), Gaps = 52/330 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP+TL+++ GQ        V  +   A    +   +  GPPG+GKTTLAQ++A 
Sbjct: 4   PLAERLRPKTLDDYIGQKHLVGPGAVLRKMIDA--GRISSFILWGPPGVGKTTLAQIIAN 61

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAM 129
           +L   F + S  V +   D+  ++              +LFIDEIHR S   ++ L  A+
Sbjct: 62  KLETPFYTLSA-VTSGVKDVRDVIEKARSNRFFSQASPILFIDEIHRFSKSQQDSLLGAV 120

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E   + L+    E PS   ++  LSR  L    +                       +E 
Sbjct: 121 ETGVVTLIGATTENPSFEVIRPLLSRCQLYVLKSLEKGDL-----------------LEL 163

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           L   + +   L    +  +    +   S G  R    +L  V +    A    IT E   
Sbjct: 164 LHNAIAKDVILKEKKIELKETDAMLRFSGGDARKLLNILELVVEADADAGPVVITDEKVT 223

Query: 248 AALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
             L +   A DK G    D+                   ISA +   R +  D    ++ 
Sbjct: 224 ERLQQNPLAYDKDGEMHYDI-------------------ISAFIKSIRGSDPDGALYWLA 264

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +       P    R L+  A + +G+  P+
Sbjct: 265 RMVEAGEDPAFIARRLVISAAEDIGLANPN 294


>gi|325970918|ref|YP_004247109.1| ATPase AAA [Spirochaeta sp. Buddy]
 gi|324026156|gb|ADY12915.1| AAA ATPase central domain protein [Spirochaeta sp. Buddy]
          Length = 727

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 63/342 (18%), Positives = 123/342 (35%), Gaps = 44/342 (12%)

Query: 8   LSRNVSQEDADIS-----LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           L    S++D   +      +RPRTL+E+ GQ       ++   A +A  + L  V+F GP
Sbjct: 3   LFTEASEKDQLANQPLAYRMRPRTLDEYIGQDAIIGAGRLLRRAIQA--DQLSSVIFYGP 60

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIH 115
           PG GKTTLA+V+A     +F + +  V++   +L   +     R        +LFIDE+H
Sbjct: 61  PGTGKTTLARVIANTTKRHFSTLNA-VLSGVKELRYEIEEARQRLELYNRGTILFIDEVH 119

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++ L P +E+  + L+    E P        +SR  +    +            
Sbjct: 120 RWNKSQQDALLPWVENGTVILIGATTENPYFEVNAALVSRSRIFQLKS------------ 167

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                     + +DL  I ++          +               +A    R + +  
Sbjct: 168 ---------LDTDDLLAIAKQALADKERGYGNYQVTFETGALEHLCEVANGDARSLLNAL 218

Query: 234 EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
           ++A   +                      +  + +         G    + ISA +   R
Sbjct: 219 QLAVETSGDSFPPKNGNAIHISKDAAEQSIQRKAVL----YDKEGDYHFDVISAFIKSIR 274

Query: 294 DAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +  D    ++ +       P+   R ++  + + +G+  P+
Sbjct: 275 GSDPDATLYWLARMISAGEDPKFIFRRMLISSCEDVGLADPN 316


>gi|294782754|ref|ZP_06748080.1| ATPase, AAA family [Fusobacterium sp. 1_1_41FAA]
 gi|294481395|gb|EFG29170.1| ATPase, AAA family [Fusobacterium sp. 1_1_41FAA]
          Length = 407

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 69/339 (20%), Positives = 120/339 (35%), Gaps = 58/339 (17%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            L   N    +     LRP+ L++F GQ +      V          AL + +F GPPG 
Sbjct: 2   NLFQNNYKNVEPLAYKLRPKNLDDFVGQEKLLGKDGVIRRLIL--NSALSNSIFYGPPGC 59

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLS 118
           GK++L ++++  L  NF   +    A   D+  ++   +        R +LF+DEIHR +
Sbjct: 60  GKSSLGEIISNTLDCNFEKLNA-TTASVSDIRTVVETAKRNIELYNKRTILFLDEIHRFN 118

Query: 119 IIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
              ++ L    ED  L L+    E P        LSR                      +
Sbjct: 119 KNQQDALLSYTEDGTLTLIGATTENPYYNINNALLSRV---------------------M 157

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
                    ED+  ++ +G     ++++D+    I   ++G  RIA   +    +     
Sbjct: 158 VFEFKALTNEDISKLIDKGLNFLNISMSDKIKEIIIDIAQGDSRIALNYVEMYNNI---- 213

Query: 237 HAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAI 296
           H++    EI      R        D+ D+                   ISA +   R + 
Sbjct: 214 HSQMTEDEIFSIFKERQVSFDKKQDKYDM-------------------ISAFIKSVRGSD 254

Query: 297 EDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            D    ++ +       P+   R L   A + +G+  P 
Sbjct: 255 PDAAVYWLARLLDGGEDPKYIARRLFIEASEDIGMANPE 293


>gi|223984816|ref|ZP_03634926.1| hypothetical protein HOLDEFILI_02224 [Holdemania filiformis DSM
           12042]
 gi|223963225|gb|EEF67627.1| hypothetical protein HOLDEFILI_02224 [Holdemania filiformis DSM
           12042]
          Length = 443

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 72/344 (20%), Positives = 125/344 (36%), Gaps = 50/344 (14%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M+  +  L  +        S LRP+TLEE  GQ       K+  +  +   + +  ++F 
Sbjct: 1   MILEQKSLFDDRDLNSPLASRLRPKTLEEVAGQKHLLGEGKILRQLIEQ--DQVSSMIFW 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDL------AALLTNLEDRDVLFIDEI 114
           GPPG+GKTTLA+++A E   +       V +   ++      A L   + ++ +LF+DEI
Sbjct: 59  GPPGVGKTTLARIIA-ERTQSHFVDFSAVTSGIKEIKEVMNKAELNRQMGEKTILFVDEI 117

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++   P +E   + L+    E PS       LSR  +             L  
Sbjct: 118 HRFNKAQQDAFLPFVEKGSIILIGATTENPSFEINAALLSRCKVFVLQALATEDLTELLA 177

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R                    RG     + + D+    IA  + G  R A   L  V   
Sbjct: 178 R---------------ALQDPRGFGNYHVELNDDLLWMIANFANGDARTALNTLEMVVLN 222

Query: 233 AEVAHAK-TITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGL 289
            +       +T+E  +  + R +   DK G +  +L                   ISA  
Sbjct: 223 GDKNGEDIVVTKEHLEQCINRKSLLYDKKGEEHYNL-------------------ISALH 263

Query: 290 SEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
              R++       ++ +       P    R ++  A + +G+  
Sbjct: 264 KSMRNSDVQASVYWLARMLEAGEDPLYIARRVVRFASEDIGMAD 307


>gi|290510640|ref|ZP_06550010.1| ATPase [Klebsiella sp. 1_1_55]
 gi|289777356|gb|EFD85354.1| ATPase [Klebsiella sp. 1_1_55]
          Length = 447

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 74/342 (21%), Positives = 115/342 (33%), Gaps = 42/342 (12%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M +     S N  Q     + +RP  L ++ GQ    +  K    A +A    L  ++  
Sbjct: 1   MSNLSLDFSDNAFQ--PLAARMRPENLAQYIGQQHLLAPGKPLQRAIEAGH--LHSMILW 56

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIH 115
           GPPG GKTTLA+V+AR    +    S        I +A + A    N   R +LF+DE+H
Sbjct: 57  GPPGTGKTTLAEVIARYASADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVH 116

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P +ED  +  +    E PS       LSR  +    +        + D 
Sbjct: 117 RFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLTTDDIERVLD- 175

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                               RG     + + DE    IA    G  R A   L  + D A
Sbjct: 176 -------------QAMNDKSRGYGGQDIILPDETRKAIAELVNGDARRALNTLEMMADMA 222

Query: 234 EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
           E   +     +      +         ++ D  Y               + ISA     R
Sbjct: 223 ESDDSGKRVLKAELLTEIAGERSARFDNKGDRFY---------------DLISALHKSVR 267

Query: 294 DAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +  D    +  +       P    R  + IA + +G   P 
Sbjct: 268 GSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPR 309


>gi|260580369|ref|ZP_05848198.1| replication-associated recombination protein A [Haemophilus
           influenzae RdAW]
 gi|260093046|gb|EEW76980.1| replication-associated recombination protein A [Haemophilus
           influenzae RdAW]
          Length = 446

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 67/331 (20%), Positives = 116/331 (35%), Gaps = 51/331 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP +LE++ GQ       K   +A +A    +  ++  GPPG GKTTLA+++A+
Sbjct: 15  PLAAKMRPTSLEQYFGQSHLIGEGKPLRKAIQAGH--IYSMILWGPPGTGKTTLAEIIAQ 72

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            +       S        I +A D A      + + +LF+DE+HR +   ++   P +ED
Sbjct: 73  RINAEVERISAVTSGIKEIREAIDRAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIED 132

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             +  +    E PS       LSR  +    +        +              ++   
Sbjct: 133 GTVIFIGATTENPSFELNNALLSRARVYVLKSLTTAEIEQV--------------LQQAV 178

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
              +RG     L + +     +A    G  R+A   L  + D A+               
Sbjct: 179 EDPKRGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMADETENGK--------- 229

Query: 250 LLRLAIDKMGFDQLDLRYLTMI-----ARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
                       ++D   L  +     AR    G    + ISA     R +  D    + 
Sbjct: 230 ------------KIDRTLLKEVLGERQARFDKQGDRFYDLISALHKSVRGSAPDAALYWY 277

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +       P    R L+ IA + +G   P 
Sbjct: 278 ARILTAGGDPLYVARRLLAIASEDVGNADPR 308


>gi|323967139|gb|EGB62563.1| ATPase [Escherichia coli M863]
 gi|327253680|gb|EGE65309.1| ATPase family associated with various cellular activities family
           protein [Escherichia coli STEC_7v]
          Length = 447

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 73/331 (22%), Positives = 116/331 (35%), Gaps = 50/331 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP  L ++ GQ    +  K    A +A    L  ++  GPPG GKTTLA+V+AR
Sbjct: 15  PLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIAR 72

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
               +    S        I +A + A    N   R +LF+DE+HR +   ++   P +ED
Sbjct: 73  YANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED 132

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATT-----RVGLLTNPLQDRFGIPIRLNFYE 184
             +  +    E PS       LSR  +    +        +LT  ++D+           
Sbjct: 133 GTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDK----------- 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
                    RG     + + DE    IA    G  R A   L  + D AEV  +     +
Sbjct: 182 --------TRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLK 233

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
                 +         ++ D  Y               + ISA     R +  D    + 
Sbjct: 234 PELLTEIAGERSARFDNKGDRFY---------------DLISALHKSVRGSAPDAALYWY 278

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +       P    R  + IA + +G   P 
Sbjct: 279 ARIITAGGDPLYVARRCLAIASEDVGNADPR 309


>gi|15830231|ref|NP_309004.1| recombination factor protein RarA [Escherichia coli O157:H7 str.
           Sakai]
 gi|16128859|ref|NP_415412.1| recombination protein involved in processing recombnation
           intermediates at replication forks [Escherichia coli
           str. K-12 substr. MG1655]
 gi|26246918|ref|NP_752958.1| recombination factor protein RarA [Escherichia coli CFT073]
 gi|82777586|ref|YP_403935.1| recombination factor protein RarA [Shigella dysenteriae Sd197]
 gi|89107742|ref|AP_001522.1| recombination protein [Escherichia coli str. K-12 substr. W3110]
 gi|110641092|ref|YP_668822.1| recombination factor protein RarA [Escherichia coli 536]
 gi|157160415|ref|YP_001457733.1| recombination factor protein RarA [Escherichia coli HS]
 gi|168752126|ref|ZP_02777148.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           O157:H7 str. EC4113]
 gi|168756983|ref|ZP_02781990.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           O157:H7 str. EC4401]
 gi|168762974|ref|ZP_02787981.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           O157:H7 str. EC4501]
 gi|168769885|ref|ZP_02794892.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           O157:H7 str. EC4486]
 gi|168776257|ref|ZP_02801264.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           O157:H7 str. EC4196]
 gi|168783802|ref|ZP_02808809.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           O157:H7 str. EC4076]
 gi|168787320|ref|ZP_02812327.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           O157:H7 str. EC869]
 gi|168801426|ref|ZP_02826433.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           O157:H7 str. EC508]
 gi|170080550|ref|YP_001729870.1| recombination protein [Escherichia coli str. K-12 substr. DH10B]
 gi|170682500|ref|YP_001744278.1| recombination factor protein RarA [Escherichia coli SMS-3-5]
 gi|191172124|ref|ZP_03033668.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           F11]
 gi|193070763|ref|ZP_03051698.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           E110019]
 gi|194438737|ref|ZP_03070824.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           101-1]
 gi|195939555|ref|ZP_03084937.1| recombination factor protein RarA [Escherichia coli O157:H7 str.
           EC4024]
 gi|208815727|ref|ZP_03256906.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           O157:H7 str. EC4045]
 gi|208822111|ref|ZP_03262430.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           O157:H7 str. EC4042]
 gi|209397045|ref|YP_002269565.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           O157:H7 str. EC4115]
 gi|209918141|ref|YP_002292225.1| recombination factor protein RarA [Escherichia coli SE11]
 gi|217324512|ref|ZP_03440596.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           O157:H7 str. TW14588]
 gi|218548414|ref|YP_002382205.1| recombination factor protein RarA [Escherichia fergusonii ATCC
           35469]
 gi|218688680|ref|YP_002396892.1| recombination factor protein RarA [Escherichia coli ED1a]
 gi|218704321|ref|YP_002411840.1| recombination factor protein RarA [Escherichia coli UMN026]
 gi|227884141|ref|ZP_04001946.1| recombination ATPase [Escherichia coli 83972]
 gi|238900150|ref|YP_002925946.1| recombination protein [Escherichia coli BW2952]
 gi|253774079|ref|YP_003036910.1| recombination factor protein RarA [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254161006|ref|YP_003044114.1| recombination factor protein RarA [Escherichia coli B str. REL606]
 gi|254792092|ref|YP_003076929.1| recombination factor protein RarA [Escherichia coli O157:H7 str.
           TW14359]
 gi|256023407|ref|ZP_05437272.1| recombination factor protein RarA [Escherichia sp. 4_1_40B]
 gi|261227397|ref|ZP_05941678.1| recombination protein [Escherichia coli O157:H7 str. FRIK2000]
 gi|261256180|ref|ZP_05948713.1| recombination protein [Escherichia coli O157:H7 str. FRIK966]
 gi|293404199|ref|ZP_06648193.1| recombination factor protein RarA [Escherichia coli FVEC1412]
 gi|293409270|ref|ZP_06652846.1| conserved hypothetical protein [Escherichia coli B354]
 gi|297518812|ref|ZP_06937198.1| recombination factor protein RarA [Escherichia coli OP50]
 gi|298379980|ref|ZP_06989585.1| replication-associated recombination protein A [Escherichia coli
           FVEC1302]
 gi|306812652|ref|ZP_07446845.1| recombination factor protein RarA [Escherichia coli NC101]
 gi|307137520|ref|ZP_07496876.1| recombination factor protein RarA [Escherichia coli H736]
 gi|309784009|ref|ZP_07678653.1| ATPase family associated with various cellular activities (AAA)
           family protein [Shigella dysenteriae 1617]
 gi|331641413|ref|ZP_08342548.1| replication-associated recombination protein A [Escherichia coli
           H736]
 gi|331646159|ref|ZP_08347262.1| replication-associated recombination protein A [Escherichia coli
           M605]
 gi|331651911|ref|ZP_08352930.1| replication-associated recombination protein A [Escherichia coli
           M718]
 gi|331656964|ref|ZP_08357926.1| replication-associated recombination protein A [Escherichia coli
           TA206]
 gi|331662307|ref|ZP_08363230.1| replication-associated recombination protein A [Escherichia coli
           TA143]
 gi|331667266|ref|ZP_08368131.1| replication-associated recombination protein A [Escherichia coli
           TA271]
 gi|331672433|ref|ZP_08373223.1| replication-associated recombination protein A [Escherichia coli
           TA280]
 gi|331676679|ref|ZP_08377375.1| replication-associated recombination protein A [Escherichia coli
           H591]
 gi|331682401|ref|ZP_08383020.1| replication-associated recombination protein A [Escherichia coli
           H299]
 gi|77416799|sp|P0AAZ6|RARA_ECO57 RecName: Full=Replication-associated recombination protein A
 gi|77416800|sp|P0AAZ5|RARA_ECOL6 RecName: Full=Replication-associated recombination protein A
 gi|77416801|sp|P0AAZ4|RARA_ECOLI RecName: Full=Replication-associated recombination protein A
 gi|321160007|pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
           Mgsa
 gi|321160008|pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
           Mgsa
 gi|321160009|pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
           Mgsa
 gi|321160010|pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
           Mgsa
 gi|26107318|gb|AAN79501.1|AE016758_105 Hypothetical protein ycaJ [Escherichia coli CFT073]
 gi|1787119|gb|AAC73978.1| recombination protein involved in processing recombnation
           intermediates at replication forks [Escherichia coli
           str. K-12 substr. MG1655]
 gi|4062469|dbj|BAA35617.1| recombination protein [Escherichia coli str. K12 substr. W3110]
 gi|13360436|dbj|BAB34400.1| putative polynucleotide enzyme [Escherichia coli O157:H7 str.
           Sakai]
 gi|81241734|gb|ABB62444.1| putative polynucleotide enzyme [Shigella dysenteriae Sd197]
 gi|110342684|gb|ABG68921.1| putative polynucleotide enzyme [Escherichia coli 536]
 gi|157066095|gb|ABV05350.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           HS]
 gi|169888385|gb|ACB02092.1| recombination protein [Escherichia coli str. K-12 substr. DH10B]
 gi|170520218|gb|ACB18396.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           SMS-3-5]
 gi|187768384|gb|EDU32228.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           O157:H7 str. EC4196]
 gi|188013952|gb|EDU52074.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           O157:H7 str. EC4113]
 gi|188998918|gb|EDU67904.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           O157:H7 str. EC4076]
 gi|189355914|gb|EDU74333.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           O157:H7 str. EC4401]
 gi|189361172|gb|EDU79591.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           O157:H7 str. EC4486]
 gi|189366832|gb|EDU85248.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           O157:H7 str. EC4501]
 gi|189372743|gb|EDU91159.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           O157:H7 str. EC869]
 gi|189376426|gb|EDU94842.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           O157:H7 str. EC508]
 gi|190907651|gb|EDV67246.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           F11]
 gi|192955956|gb|EDV86424.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           E110019]
 gi|194422369|gb|EDX38369.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           101-1]
 gi|208732375|gb|EDZ81063.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           O157:H7 str. EC4045]
 gi|208737596|gb|EDZ85279.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           O157:H7 str. EC4042]
 gi|209158445|gb|ACI35878.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           O157:H7 str. EC4115]
 gi|209775028|gb|ACI85826.1| putative polynucleotide enzyme [Escherichia coli]
 gi|209775030|gb|ACI85827.1| putative polynucleotide enzyme [Escherichia coli]
 gi|209775032|gb|ACI85828.1| putative polynucleotide enzyme [Escherichia coli]
 gi|209775034|gb|ACI85829.1| putative polynucleotide enzyme [Escherichia coli]
 gi|209775036|gb|ACI85830.1| putative polynucleotide enzyme [Escherichia coli]
 gi|209911400|dbj|BAG76474.1| putative polynucleotide enzyme [Escherichia coli SE11]
 gi|217320733|gb|EEC29157.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           O157:H7 str. TW14588]
 gi|218355955|emb|CAQ88571.1| recombination protein [Escherichia fergusonii ATCC 35469]
 gi|218426244|emb|CAR07069.1| recombination protein [Escherichia coli ED1a]
 gi|218431418|emb|CAR12296.1| recombination protein [Escherichia coli UMN026]
 gi|222032626|emb|CAP75365.1| Uncharacterized protein ycaJ [Escherichia coli LF82]
 gi|227838893|gb|EEJ49359.1| recombination ATPase [Escherichia coli 83972]
 gi|238863427|gb|ACR65425.1| recombination protein [Escherichia coli BW2952]
 gi|242376707|emb|CAQ31420.1| recombination factor [Escherichia coli BL21(DE3)]
 gi|253325123|gb|ACT29725.1| AAA ATPase central domain protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253972907|gb|ACT38578.1| recombination protein [Escherichia coli B str. REL606]
 gi|253977121|gb|ACT42791.1| recombination protein [Escherichia coli BL21(DE3)]
 gi|254591492|gb|ACT70853.1| recombination protein [Escherichia coli O157:H7 str. TW14359]
 gi|260449962|gb|ACX40384.1| AAA ATPase central domain protein [Escherichia coli DH1]
 gi|284920745|emb|CBG33808.1| putative ATPase [Escherichia coli 042]
 gi|291428785|gb|EFF01810.1| recombination factor protein RarA [Escherichia coli FVEC1412]
 gi|291469738|gb|EFF12222.1| conserved hypothetical protein [Escherichia coli B354]
 gi|298279678|gb|EFI21186.1| replication-associated recombination protein A [Escherichia coli
           FVEC1302]
 gi|305853415|gb|EFM53854.1| recombination factor protein RarA [Escherichia coli NC101]
 gi|307552734|gb|ADN45509.1| hypothetical protein with a putative UvrD-like DNA helicase domain
           [Escherichia coli ABU 83972]
 gi|308928152|gb|EFP73615.1| ATPase family associated with various cellular activities (AAA)
           family protein [Shigella dysenteriae 1617]
 gi|309701168|emb|CBJ00468.1| putative ATPase [Escherichia coli ETEC H10407]
 gi|312945415|gb|ADR26242.1| recombination factor protein RarA [Escherichia coli O83:H1 str. NRG
           857C]
 gi|315135540|dbj|BAJ42699.1| recombination factor protein RarA [Escherichia coli DH1]
 gi|320192621|gb|EFW67262.1| recombination factor protein RarA [Escherichia coli O157:H7 str.
           EC1212]
 gi|320202287|gb|EFW76858.1| recombination factor protein RarA [Escherichia coli EC4100B]
 gi|320637762|gb|EFX07554.1| recombination factor protein RarA [Escherichia coli O157:H7 str.
           G5101]
 gi|320642886|gb|EFX12087.1| recombination factor protein RarA [Escherichia coli O157:H- str.
           493-89]
 gi|320648343|gb|EFX16998.1| recombination factor protein RarA [Escherichia coli O157:H- str. H
           2687]
 gi|320654181|gb|EFX22249.1| recombination factor protein RarA [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320659805|gb|EFX27361.1| recombination factor protein RarA [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320664274|gb|EFX31425.1| recombination factor protein RarA [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323937998|gb|EGB34260.1| ATPase [Escherichia coli E1520]
 gi|323942808|gb|EGB38973.1| ATPase [Escherichia coli E482]
 gi|323962940|gb|EGB58513.1| ATPase [Escherichia coli H489]
 gi|323969606|gb|EGB64893.1| ATPase [Escherichia coli TA007]
 gi|323976721|gb|EGB71809.1| ATPase [Escherichia coli TW10509]
 gi|324113811|gb|EGC07786.1| ATPase [Escherichia fergusonii B253]
 gi|326338212|gb|EGD62041.1| recombination factor protein RarA [Escherichia coli O157:H7 str.
           1125]
 gi|326346189|gb|EGD69927.1| recombination factor protein RarA [Escherichia coli O157:H7 str.
           1044]
 gi|330910674|gb|EGH39184.1| ATPase, AAA family [Escherichia coli AA86]
 gi|331038211|gb|EGI10431.1| replication-associated recombination protein A [Escherichia coli
           H736]
 gi|331044911|gb|EGI17038.1| replication-associated recombination protein A [Escherichia coli
           M605]
 gi|331050189|gb|EGI22247.1| replication-associated recombination protein A [Escherichia coli
           M718]
 gi|331055212|gb|EGI27221.1| replication-associated recombination protein A [Escherichia coli
           TA206]
 gi|331060729|gb|EGI32693.1| replication-associated recombination protein A [Escherichia coli
           TA143]
 gi|331065622|gb|EGI37515.1| replication-associated recombination protein A [Escherichia coli
           TA271]
 gi|331070339|gb|EGI41704.1| replication-associated recombination protein A [Escherichia coli
           TA280]
 gi|331075368|gb|EGI46666.1| replication-associated recombination protein A [Escherichia coli
           H591]
 gi|331080032|gb|EGI51211.1| replication-associated recombination protein A [Escherichia coli
           H299]
 gi|332342281|gb|AEE55615.1| recombination factor protein RarA [Escherichia coli UMNK88]
          Length = 447

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 73/331 (22%), Positives = 116/331 (35%), Gaps = 50/331 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP  L ++ GQ    +  K    A +A    L  ++  GPPG GKTTLA+V+AR
Sbjct: 15  PLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIAR 72

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
               +    S        I +A + A    N   R +LF+DE+HR +   ++   P +ED
Sbjct: 73  YANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED 132

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATT-----RVGLLTNPLQDRFGIPIRLNFYE 184
             +  +    E PS       LSR  +    +        +LT  ++D+           
Sbjct: 133 GTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDK----------- 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
                    RG     + + DE    IA    G  R A   L  + D AEV  +     +
Sbjct: 182 --------TRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLK 233

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
                 +         ++ D  Y               + ISA     R +  D    + 
Sbjct: 234 PELLTEIAGERSARFDNKGDRFY---------------DLISALHKSVRGSAPDAALYWY 278

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +       P    R  + IA + +G   P 
Sbjct: 279 ARIITAGGDPLYVARRCLAIASEDVGNADPR 309


>gi|254485674|ref|ZP_05098879.1| ATPase, AAA family [Roseobacter sp. GAI101]
 gi|214042543|gb|EEB83181.1| ATPase, AAA family [Roseobacter sp. GAI101]
          Length = 435

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 76/328 (23%), Positives = 122/328 (37%), Gaps = 54/328 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP+TL E  GQ +              ++ +L  ++F GPPG+GKTT+A+++A 
Sbjct: 18  PLADRLRPKTLAEVIGQAQVLGPDGPL--TVMLQSGSLGSLIFWGPPGVGKTTIARLLAD 75

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
           E  ++F   S      P + K  + A +        +LF+DEIHR +   ++   P MED
Sbjct: 76  ETDLHFVQISAIFSGVPELRKVFEAAKIRRQNGRGTLLFVDEIHRFNKAQQDGFLPHMED 135

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             + L+    E PS       LSR  ++           PL D               L+
Sbjct: 136 GTILLVGATTENPSFELNAAVLSRSQVLVLERL------PLAD---------------LE 174

Query: 190 TIVQRGAKLT--GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            + QR        L +   A   +   + G  R    L+ +V   A     K +  +   
Sbjct: 175 RLAQRAEVELGRSLPINGPARESLLEMADGDGRALLNLIEQV---AAWKVDKPLDGKALS 231

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           A L+R A                 A+   GG      ISA     R +  D    ++ + 
Sbjct: 232 ARLMRRA-----------------AQYDKGGDAHYNLISALHKSVRGSDPDAALYWLARM 274

Query: 308 GFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                 PR   R +  +A + +G+  P 
Sbjct: 275 LEGGEDPRYLMRRITRMAVEDIGLADPQ 302


>gi|270308478|ref|YP_003330536.1| ATPase, AAA family [Dehalococcoides sp. VS]
 gi|270154370|gb|ACZ62208.1| ATPase, AAA family [Dehalococcoides sp. VS]
          Length = 457

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 80/349 (22%), Positives = 133/349 (38%), Gaps = 53/349 (15%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           +MD     +  + +  + ++  +RP  L EF GQ       +    A +   + +  ++F
Sbjct: 5   IMDLFDAGAEKLKKSQSPLAARMRPEGLSEFVGQDHLIGEGRALRLAIE--GDKIPSLIF 62

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFID 112
            GPPG GKTTLA ++AR L  +F + S  V A   DL  ++    +R        +LFID
Sbjct: 63  WGPPGSGKTTLANIIARRLDAHFSALSA-VSAGVADLRRVVEEARERLKFERRRTILFID 121

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           EIHR +   ++ + P +ED  + L+    E PS       LSR  +         + NPL
Sbjct: 122 EIHRFNKSQQDAILPYVEDGTVVLIGATTENPSFEVNSALLSRAQV--------YVLNPL 173

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
            ++    I     E        Q G       + +++   I+  ++G  RIA  +L    
Sbjct: 174 SEKEISLILKRSLED-------QNGLGNYHARLLEDSEKHISSFAQGDARIALNILELAV 226

Query: 231 DFAEVAHAKTIT---REIADAALLRL-AIDKMGFDQLDLRYLTMIARNFGGGPVGIETIS 286
                           ++ DAA  +    DK G    DL                   IS
Sbjct: 227 MITPPDKDGCRVVGLPQVEDAAQKKSLRYDKSGEQHYDL-------------------IS 267

Query: 287 AGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           A     R +  D    ++ +       P    R ++  A + +G+  P 
Sbjct: 268 ALHKTMRGSDPDAAIYWLGRMLEAGEDPLYIVRRVIRFATEDVGLADPQ 316


>gi|187733902|ref|YP_001880910.1| recombination factor protein RarA [Shigella boydii CDC 3083-94]
 gi|187430894|gb|ACD10168.1| putative DNA recombination-associated ATPase RarA [Shigella boydii
           CDC 3083-94]
          Length = 447

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 73/331 (22%), Positives = 116/331 (35%), Gaps = 50/331 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP  L ++ GQ    +  K    A +A    L  ++  GPPG GKTTLA+V+AR
Sbjct: 15  PLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIAR 72

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
               +    S        I +A + A    N   R +LF+DE+HR +   ++   P +ED
Sbjct: 73  YANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED 132

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATT-----RVGLLTNPLQDRFGIPIRLNFYE 184
             +  +    E PS       LSR  +    +        +LT  ++D+           
Sbjct: 133 GTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDK----------- 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
                    RG     + + DE    IA    G  R A   L  + D AEV  +     +
Sbjct: 182 --------TRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLK 233

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
                 +         ++ D  Y               + ISA     R +  D    + 
Sbjct: 234 PELLTEIAGERSARFDNKGDRFY---------------DLISALHKSVRGSAPDAALYWY 278

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +       P    R  + IA + +G   P 
Sbjct: 279 ARIITAGGDPLYVARRCLAIASEDVGNADPR 309


>gi|169334179|ref|ZP_02861372.1| hypothetical protein ANASTE_00575 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258896|gb|EDS72862.1| hypothetical protein ANASTE_00575 [Anaerofustis stercorihominis DSM
           17244]
          Length = 482

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 69/335 (20%), Positives = 127/335 (37%), Gaps = 43/335 (12%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           + +    +  +      +RP  L+EF GQ       K+     +A  + +  ++  GP G
Sbjct: 49  DDVREEQLKTKAPLAVRMRPENLDEFFGQEHIVGEGKLLNRMIEA--DRISSIILFGPAG 106

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRL 117
            GKTTLA+++A +    F S +  V     D+  ++ N +        + +LFIDEIHR 
Sbjct: 107 CGKTTLARIIANKTSSYFYSLNA-VTCGVKDVREIIENAKANLGMERKKSILFIDEIHRF 165

Query: 118 SIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
           +   ++ L P++ED  + L+    E P        +SR TL             +     
Sbjct: 166 NKSQQDALLPSVEDGTIILIGATTENPFFEINSPLISRSTLFKLKKIEKEDVRKI----- 220

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
                    IE+     +RG     + + +EA   +++ S G  R++   L         
Sbjct: 221 ---------IENTLKNKERGLGNYDIQIDEEAIDYLSLMSSGDARVSLNALELAYLTTPK 271

Query: 236 AHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDA 295
                I       A   +   K+ +D+ D  +               +TISA +   R +
Sbjct: 272 DENGVIKLNKDIIA-ECMQKKKVTYDKGDNEH--------------YDTISAFIKSMRGS 316

Query: 296 IEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLG 328
             D    Y+ +  +    P+   R ++  A + +G
Sbjct: 317 DPDAAVYYLAKMLYAGEDPKFIARRMIIFASEDIG 351


>gi|152969481|ref|YP_001334590.1| recombination factor protein RarA [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|329998191|ref|ZP_08303003.1| replication-associated recombination protein A [Klebsiella sp. MS
           92-3]
 gi|150954330|gb|ABR76360.1| putative polynucleotide enzyme [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|328538806|gb|EGF64881.1| replication-associated recombination protein A [Klebsiella sp. MS
           92-3]
          Length = 447

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 74/342 (21%), Positives = 115/342 (33%), Gaps = 42/342 (12%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M +     S N  Q     + +RP  L ++ GQ    +  K    A +A    L  ++  
Sbjct: 1   MSNLSLDFSDNAFQ--PLAARMRPENLAQYIGQQHLLAPGKPLPRAIEAGH--LHSMILW 56

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIH 115
           GPPG GKTTLA+V+AR    +    S        I +A + A    N   R +LF+DE+H
Sbjct: 57  GPPGTGKTTLAEVIARYASADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVH 116

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P +ED  +  +    E PS       LSR  +    +        + D 
Sbjct: 117 RFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLTTDDIERVLD- 175

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                               RG     + + DE    IA    G  R A   L  + D A
Sbjct: 176 -------------QAMNDKTRGYGGQDIILPDETRRAIAELVNGDARRALNTLEMMADMA 222

Query: 234 EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
           E   +     +      +         ++ D  Y               + ISA     R
Sbjct: 223 ESDDSGKRVLKAELLTEIAGERSARFDNKGDRFY---------------DLISALHKSVR 267

Query: 294 DAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +  D    +  +       P    R  + IA + +G   P 
Sbjct: 268 GSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPR 309


>gi|320180609|gb|EFW55538.1| recombination factor protein RarA [Shigella boydii ATCC 9905]
          Length = 447

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 73/331 (22%), Positives = 115/331 (34%), Gaps = 50/331 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP  L ++ GQ    +  K    A +A    L  ++  GPPG GKTTLA+V+AR
Sbjct: 15  PLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIAR 72

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
               +    S        I +A + A    N   R +LF+DE+HR +   ++   P +ED
Sbjct: 73  YANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED 132

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATT-----RVGLLTNPLQDRFGIPIRLNFYE 184
             +  +    E PS       LSR  +    +        +LT  ++D+           
Sbjct: 133 GTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDK----------- 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
                    RG     + + DE    IA    G  R A   L  + D AEV        +
Sbjct: 182 --------TRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVNDRGKRVLK 233

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
                 +         ++ D  Y               + ISA     R +  D    + 
Sbjct: 234 PELLTEIAGERSARFDNKGDRFY---------------DLISALHKSVRGSAPDAALYWY 278

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +       P    R  + IA + +G   P 
Sbjct: 279 ARIITAGGDPLYVARRCLAIASEDVGNADPR 309


>gi|254468300|ref|ZP_05081706.1| AAA ATPase, central region [beta proteobacterium KB13]
 gi|207087110|gb|EDZ64393.1| AAA ATPase, central region [beta proteobacterium KB13]
          Length = 429

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 64/329 (19%), Positives = 114/329 (34%), Gaps = 54/329 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
               +LRP+ +++  GQ     +      A    +  L  ++  GPPG+GKT++A  +A 
Sbjct: 7   PLAEILRPKIIDDVIGQDHLLGDDCPIRNAV--TSNKLPSIILWGPPGVGKTSIAYAIAN 64

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAM 129
            +   F S S  V++   D+   +          + + +LFIDE+HR +   ++   P +
Sbjct: 65  SVNYEFISLSA-VLSGVKDIREAVDKANFNKDQNQKKTMLFIDEVHRFNKSQQDAFLPHV 123

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E+     +    E PS       LSR  +    +                        E 
Sbjct: 124 ENGLFTFIGATTENPSFEVNSALLSRCQVYILNS---------------------LSNEA 162

Query: 188 LKTIVQRGAKLTGLAVTDEAACEI-AMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           LKTI+ +   +      DE + E     + G  R    L+  V  +++    +     I 
Sbjct: 163 LKTILNKALSIQENIKLDEPSTEFIIEYANGDGRRLLNLVEVVYFYSKDKPIEVDIDLIK 222

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
             A                       R   GG    + ISA     R +  D    ++ +
Sbjct: 223 KIASSSYR------------------RFDKGGEQFYDQISALHKSVRGSDPDASIYWLQR 264

Query: 307 QGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
                  P    R ++ IA + +G+  P 
Sbjct: 265 MLDGGADPLYLARRIIRIAIEDIGLADPK 293


>gi|238795840|ref|ZP_04639353.1| Replication-associated recombination protein A [Yersinia mollaretii
           ATCC 43969]
 gi|238720303|gb|EEQ12106.1| Replication-associated recombination protein A [Yersinia mollaretii
           ATCC 43969]
          Length = 444

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 71/337 (21%), Positives = 118/337 (35%), Gaps = 42/337 (12%)

Query: 8   LSRNVSQED--ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           +S + SQ +     + +RP TL+++ GQ    +  K    A  A    L  ++  GPPG 
Sbjct: 1   MSLDFSQNEFQPLAARMRPLTLDQYIGQQHLLAPGKPLPRAIVAGQ--LHSMILWGPPGT 58

Query: 66  GKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GKTTLA+++ R    +    S        I +A + A    +   R +LF+DE+HR +  
Sbjct: 59  GKTTLAEIIGRYGQADVERISAVTSGIKEIREAIERARQNRDAGRRTILFVDEVHRFNKS 118

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++   P +ED  +  +    E PS       LSR  +    +        + D      
Sbjct: 119 QQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLTAADIEKVID------ 172

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
                      +  QRG     + + DE    ++    G  R A   L  + D AE+   
Sbjct: 173 --------QAMSDSQRGYGGQNIKLPDETRRMMSELVGGDARRALNSLEMMADMAEIDAN 224

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
                       +         ++ D  Y               + ISA     R +  D
Sbjct: 225 GVRLLTPDLLKEVSGERSARFDNKGDRYY---------------DLISAVHKSIRGSAPD 269

Query: 299 LIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
               +  +       P    R L+ IA + +G   P 
Sbjct: 270 AALYWYARIITAGGDPLYVARRLLAIASEDVGNADPR 306


>gi|160936225|ref|ZP_02083598.1| hypothetical protein CLOBOL_01121 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441035|gb|EDP18759.1| hypothetical protein CLOBOL_01121 [Clostridium bolteae ATCC
           BAA-613]
          Length = 438

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 74/345 (21%), Positives = 127/345 (36%), Gaps = 51/345 (14%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M++  L   +    +   S LRP  L+ F GQ       K+  +  +   + +  ++F G
Sbjct: 1   MEQMSLFD-DREVYNPLASRLRPDDLDGFVGQEHLLGKGKLLRQLIEQ--DKIPSMIFWG 57

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIH 115
           PPG+GKTTLA ++A+     F + S  V +   ++  ++   E+      + +LF+DEIH
Sbjct: 58  PPGVGKTTLAGIIAKRTNAQFINFSA-VTSGIKEIKEVMVQAENSRRMGIKTLLFVDEIH 116

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P +E   + L+    E PS       LSR        RV +L    ++ 
Sbjct: 117 RFNKAQQDAFLPYVEKGSIILIGATTENPSFEINSALLSRC-------RVFVLQALTEND 169

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
               I+              +G     + +TD     IA  + G  R A   L       
Sbjct: 170 LARLIKTALKSP--------KGLGYLNVEITDPMIDMIAGFANGDARTALNTLEMAVTNG 221

Query: 234 EVAHAKTITREI---ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
            ++  KT   E           L  DK G +  +L                   ISA   
Sbjct: 222 VISPDKTTVTEDVLKQCIGKKSLLYDKKGEEHYNL-------------------ISALHK 262

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
             R++  D    ++ +       P    R L+  A + +G+    
Sbjct: 263 SMRNSDPDAAVYWLARMLEAGEDPLYVARRLVRFASEDIGMADSQ 307


>gi|237742495|ref|ZP_04572976.1| ATPase [Fusobacterium sp. 4_1_13]
 gi|229430143|gb|EEO40355.1| ATPase [Fusobacterium sp. 4_1_13]
          Length = 407

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 69/339 (20%), Positives = 121/339 (35%), Gaps = 58/339 (17%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            L  +N    +     LRP++L+EF GQ +      V           L + +F GPPG 
Sbjct: 2   NLFQKNYKNVEPLAYKLRPKSLDEFVGQEKLLGKDGVITRLIL--NSTLSNSIFYGPPGC 59

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLS 118
           GK++L ++++  L  NF   +   IA   D+  ++            R +LF+DEIHR +
Sbjct: 60  GKSSLGEIISNTLDCNFEKLNA-TIASVSDIRNVVETARRNIELYNKRTILFLDEIHRFN 118

Query: 119 IIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
              ++ L    ED  L L+    E P        LSR                      +
Sbjct: 119 KNQQDALLSYTEDGTLTLIGATTENPYYNINNALLSRV---------------------M 157

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
                    ED+  ++ +G     + ++D+    I   S+G  RIA   +    +     
Sbjct: 158 VFEFKALTNEDIVKLINKGLNFLNINMSDKIKEIIVDISQGDSRIALNYVEMYNNIHIQM 217

Query: 237 HAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAI 296
             + I     +         ++ FD+   +Y               + ISA +   R + 
Sbjct: 218 SEEEIFSIFKER--------QVSFDKKQDKY---------------DMISAFIKSVRGSD 254

Query: 297 EDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            D    ++ +       P+   R L   A + +G+  P 
Sbjct: 255 PDAAVYWLARLLDGGEDPKYMARRLFIEASEDIGMANPE 293


>gi|170020706|ref|YP_001725660.1| recombination factor protein RarA [Escherichia coli ATCC 8739]
 gi|312971019|ref|ZP_07785198.1| ATPase family associated with various cellular activities (AAA)
           family protein [Escherichia coli 1827-70]
 gi|169755634|gb|ACA78333.1| AAA ATPase central domain protein [Escherichia coli ATCC 8739]
 gi|310336780|gb|EFQ01947.1| ATPase family associated with various cellular activities (AAA)
           family protein [Escherichia coli 1827-70]
          Length = 447

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 73/331 (22%), Positives = 116/331 (35%), Gaps = 50/331 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP  L ++ GQ    +  K    A +A    L  ++  GPPG GKTTLA+V+AR
Sbjct: 15  PLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIAR 72

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
               +    S        I +A + A    N   R +LF+DE+HR +   ++   P +ED
Sbjct: 73  YANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED 132

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATT-----RVGLLTNPLQDRFGIPIRLNFYE 184
             +  +    E PS       LSR  +    +        +LT  ++D+           
Sbjct: 133 GTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDK----------- 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
                    RG     + + DE    IA    G  R A   L  + D AEV  +     +
Sbjct: 182 --------TRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLK 233

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
                 +         ++ D  Y               + ISA     R +  D    + 
Sbjct: 234 PELLTEIAGERSARFDNKGDRFY---------------DLISALHKSVRGSAPDAALYWY 278

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +       P    R  + IA + +G   P 
Sbjct: 279 ARIITAGGDPLYVARRCLAIASEDVGNADPR 309


>gi|237730857|ref|ZP_04561338.1| recombination factor protein RarA [Citrobacter sp. 30_2]
 gi|226906396|gb|EEH92314.1| recombination factor protein RarA [Citrobacter sp. 30_2]
          Length = 447

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 70/326 (21%), Positives = 111/326 (34%), Gaps = 40/326 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP  L ++ GQ    +  K    A +A    L  ++  GPPG GKTTLA+V+AR
Sbjct: 15  PLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIAR 72

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
               +    S        I +A + A    N   R +LF+DE+HR +   ++   P +ED
Sbjct: 73  YANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED 132

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             +  +    E PS       LSR  +    +        + D                 
Sbjct: 133 GTITFIGATTENPSFELNSALLSRARVYLLKSLTTDDIEQVLD--------------QAM 178

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
           +   RG     + +  E    IA    G  R A   L  + D AEV  +     +     
Sbjct: 179 SDKARGYGGQDIVLPPETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKPELLT 238

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
            +         ++ D  Y               + ISA     R +  D    +  +   
Sbjct: 239 EIAGERSARFDNKGDRFY---------------DLISALHKSVRGSAPDAALYWYARIIS 283

Query: 310 IQRTPR--GRLLMPIAWQHLGIDIPH 333
               P    R  + IA + +G   P 
Sbjct: 284 AGGDPLYVARRCLAIASEDVGNADPR 309


>gi|302337812|ref|YP_003803018.1| ATPase AAA [Spirochaeta smaragdinae DSM 11293]
 gi|301634997|gb|ADK80424.1| AAA ATPase central domain protein [Spirochaeta smaragdinae DSM
           11293]
          Length = 735

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 67/340 (19%), Positives = 128/340 (37%), Gaps = 40/340 (11%)

Query: 6   GLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
            L S   S E A ++  + PR L+E+ GQ       ++     +A  + L  ++F GPPG
Sbjct: 2   ELFSAAESNEKAPLAYRMSPRNLDEYIGQSHIVGPGRLLRRVIQA--DRLSSLIFYGPPG 59

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRL 117
            GKT LA+V+A      F + +  V++   +L   +++ ++       R +LF+DE+HR 
Sbjct: 60  CGKTALARVIAGTTKSAFDTLNA-VLSGVKELRQSISSAKERKELYDKRTILFVDEVHRW 118

Query: 118 SIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
           +   ++ L P +E+  + L+    E P        +SR       +R+  L    +D   
Sbjct: 119 NKAQQDALLPWVENGTVILIGATTENPFFEVNPALVSR-------SRIFQLKPLSKDDLY 171

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
                   + E       RG     ++  + A   +   + G  R     L       E+
Sbjct: 172 AVAHQALNDRE-------RGYGKWKVSFEEGALEHLISVASGDARSLLGAL-------EL 217

Query: 236 AHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDA 295
           A   ++                   + +  + +         G    +  SA +   R +
Sbjct: 218 AVETSVDSFPPQEGTELFVSISAAEESIQQKVVL----YDKDGDYHFDVASAFIKSIRGS 273

Query: 296 IEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
             D    +M +       PR   R ++  + + +G+  PH
Sbjct: 274 DPDAALYWMARMIRAGEDPRFIFRRMLISSCEDIGLADPH 313


>gi|255283517|ref|ZP_05348072.1| replication-associated recombination protein A [Bryantella
           formatexigens DSM 14469]
 gi|255265974|gb|EET59179.1| replication-associated recombination protein A [Bryantella
           formatexigens DSM 14469]
          Length = 468

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 78/350 (22%), Positives = 128/350 (36%), Gaps = 61/350 (17%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M++  L   +  +     S LRP  LE+F GQ       K+     +   + +  ++F G
Sbjct: 23  MEQMTLFD-DREKTVPLASRLRPERLEDFVGQEHLLGPGKMLRRLIEE--DQISSMIFWG 79

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALL------TNLEDRDVLFIDEIH 115
           PPG+GKTTLA ++A      F + S  V +   ++  ++        +  R VLF+DEIH
Sbjct: 80  PPGVGKTTLAGIIAAHTKAEFINFSA-VTSGIKEIKEVMQQAENSRRMGRRTVLFVDEIH 138

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAA-----TTRVGLLTN 168
           R +   ++   P +E   + L+    E PS       LSR  +           V +L N
Sbjct: 139 RFNKAQQDAFLPFVEKGSIILIGATTENPSFEVNAALLSRCRVFVLKALEEKDLVRVLEN 198

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            L    G            L + V+   +             IA  + G  R A   L  
Sbjct: 199 ALTSPSGF-----------LHSHVKMSGRQLQA---------IAAFANGDARTALNTLEM 238

Query: 229 VRDFAEVAHAK-TITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETI 285
                E++    T+T E  +  + R +   DK G +  +L                   I
Sbjct: 239 AVTNGEISAEGITVTDEGLEQCISRKSLLYDKSGEEHYNL-------------------I 279

Query: 286 SAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           SA     R++  D    +M +       P    R L+  A + +G+    
Sbjct: 280 SALHKSMRNSDPDAAIYWMCRMLEGGEDPLYIARRLIRFASEDIGMADSQ 329


>gi|82543378|ref|YP_407325.1| recombination factor protein RarA [Shigella boydii Sb227]
 gi|81244789|gb|ABB65497.1| putative polynucleotide enzyme [Shigella boydii Sb227]
 gi|320183169|gb|EFW58027.1| recombination factor protein RarA [Shigella flexneri CDC 796-83]
 gi|332097125|gb|EGJ02108.1| ATPase family associated with various cellular activities family
           protein [Shigella boydii 3594-74]
          Length = 447

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 73/331 (22%), Positives = 116/331 (35%), Gaps = 50/331 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP  L ++ GQ    +  K    A +A    L  ++  GPPG GKTTLA+V+AR
Sbjct: 15  PLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIAR 72

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
               +    S        I +A + A    N   R +LF+DE+HR +   ++   P +ED
Sbjct: 73  YANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED 132

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATT-----RVGLLTNPLQDRFGIPIRLNFYE 184
             +  +    E PS       LSR  +    +        +LT  ++D+           
Sbjct: 133 GTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDK----------- 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
                    RG     + + DE    IA    G  R A   L  + D AEV  +     +
Sbjct: 182 --------TRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLK 233

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
                 +         ++ D  Y               + ISA     R +  D    + 
Sbjct: 234 PELLTEIAGERSARFDNKGDRFY---------------DLISALHKSVRGSAPDAALYWY 278

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +       P    R  + IA + +G   P 
Sbjct: 279 ARIITAGGDPLYVARRCLAIASEDVGNADPR 309


>gi|229152603|ref|ZP_04280792.1| hypothetical protein bcere0011_41380 [Bacillus cereus m1550]
 gi|228630864|gb|EEK87504.1| hypothetical protein bcere0011_41380 [Bacillus cereus m1550]
          Length = 476

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 79/340 (23%), Positives = 130/340 (38%), Gaps = 43/340 (12%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           ++R+ +L   V  +      +RP  ++E  GQ       K+     +A       ++  G
Sbjct: 37  IERDYILRETVQMKQPLAHRMRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYG 94

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSI 119
           PPG GKT++A  +A   G  FR  +  V     D+  ++   +     VL +DE+HRL  
Sbjct: 95  PPGTGKTSIASAIAGSTGTPFRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDK 153

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             ++ L P +E   L L+      P         SR  +           + L +   + 
Sbjct: 154 AKQDFLLPHLESGLLTLIGATTSNPFHAINSAIRSRCQIFEL--------HALTEEDILI 205

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR--DFAEV 235
                 E +      ++G     + VTDEA    A  S G  R A   L       F   
Sbjct: 206 GLKRALEDK------EKGLGEYAVTVTDEALHHFANASGGDMRSAYNALELAVLSSFTTD 259

Query: 236 AHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
             A  IT EIA+  L + +   DK G    D+  L+   ++  G  V             
Sbjct: 260 DQAAEITLEIAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDV------------N 305

Query: 294 DAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            A+  L    +I+ G +Q    GR L+ +A++ +G+  P 
Sbjct: 306 AALHYLAR--LIEAGDLQSI--GRRLLIMAYEDIGLASPQ 341


>gi|293414174|ref|ZP_06656823.1| replication-associated recombination protein A [Escherichia coli
           B185]
 gi|291434232|gb|EFF07205.1| replication-associated recombination protein A [Escherichia coli
           B185]
          Length = 447

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 73/331 (22%), Positives = 116/331 (35%), Gaps = 50/331 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP  L ++ GQ    +  K    A +A    L  ++  GPPG GKTTLA+V+AR
Sbjct: 15  PLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIAR 72

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
               +    S        I +A + A    N   R +LF+DE+HR +   ++   P +ED
Sbjct: 73  YANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED 132

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATT-----RVGLLTNPLQDRFGIPIRLNFYE 184
             +  +    E PS       LSR  +    +        +LT  ++D+           
Sbjct: 133 GTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDK----------- 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
                    RG     + + DE    IA    G  R A   L  + D AEV  +     +
Sbjct: 182 --------TRGYGGQDIILPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLK 233

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
                 +         ++ D  Y               + ISA     R +  D    + 
Sbjct: 234 PELLTEIAGERSARFDNKGDRFY---------------DLISALHKSVRGSAPDAALYWY 278

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +       P    R  + IA + +G   P 
Sbjct: 279 ARIITAGGDPLYVARRCLAIASEDVGNADPR 309


>gi|313202726|ref|YP_004041383.1| recombination protein mgsa [Paludibacter propionicigenes WB4]
 gi|312442042|gb|ADQ78398.1| Recombination protein MgsA [Paludibacter propionicigenes WB4]
          Length = 421

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 73/330 (22%), Positives = 125/330 (37%), Gaps = 53/330 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP+TL+ + GQ        +  +  ++   A    +  GPPG+GKTTLA+++A 
Sbjct: 3   PLAERLRPQTLDNYIGQKHLVGENAILRKMIESGHVA--SFILWGPPGVGKTTLAKIIAN 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAM 129
           +L   F + S  V +   D+  ++          +   +LFIDEIHR S   ++ L  A+
Sbjct: 61  KLDRPFYTLSA-VTSGVKDVREVIEKAKANRFFSQANPILFIDEIHRFSKSQQDSLLGAV 119

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E+  + L+    E PS   +   LSR  +    +        L  R          E+++
Sbjct: 120 ENGTVTLIGATTENPSFEVITPLLSRCQVYVLKSLEKEDLLELAGR----AITTDIELKN 175

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            + +++    L                S G  R    +L  V + AE +     T E   
Sbjct: 176 REIVLEETESLLRF-------------SGGDARKLLNILELVVN-AEESGKVIFTNETVT 221

Query: 248 AALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
             L +   A DK G    D+                   ISA +   R +  D    ++ 
Sbjct: 222 ERLQQNPSAYDKDGEMHYDI-------------------ISAFIKSIRGSDPDAAVYWLA 262

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +       P+   R L+  A + +G+  P+
Sbjct: 263 RMVAGGEDPKFIARRLVISAAEDIGLANPN 292


>gi|332760457|gb|EGJ90746.1| ATPase family associated with various cellular activities family
           protein [Shigella flexneri 2747-71]
          Length = 447

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 72/331 (21%), Positives = 117/331 (35%), Gaps = 50/331 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP  L ++ GQ    +  K    A +A    L  ++  GPPG GKTTLA+V+AR
Sbjct: 15  PLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIAR 72

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
               +    S        I +A + A    N   R +LF+DE+HR +   ++   P +ED
Sbjct: 73  YANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED 132

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATT-----RVGLLTNPLQDRFGIPIRLNFYE 184
             +  +    E PS       LSR  +    +        +LT  ++D+           
Sbjct: 133 GTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDK----------- 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
                    RG     + + D+    IA    G  R A   L  + D AEV  +     +
Sbjct: 182 --------TRGYGGQDIVLPDDTRRAIAELVNGDARRALNTLEMMADMAEVYDSGKRVLK 233

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +     +         ++ D  Y               + ISA     R +  D    + 
Sbjct: 234 LELLTEIAGERSARFDNKGDRFY---------------DLISALHKSVRGSAPDAALYWY 278

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +       P    R  + IA + +G   P 
Sbjct: 279 ARIITAGGDPLYVARRCLAIASEDVGNADPR 309


>gi|84515662|ref|ZP_01003023.1| ATPase, AAA family [Loktanella vestfoldensis SKA53]
 gi|84510104|gb|EAQ06560.1| ATPase, AAA family [Loktanella vestfoldensis SKA53]
          Length = 436

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 75/330 (22%), Positives = 122/330 (36%), Gaps = 58/330 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP+ L E  GQ +               + +L  ++F GPPG+GKTT+A+++A 
Sbjct: 18  PLADRLRPKRLAEVIGQQQVLGTDAPL--GTMLASGSLSSLVFWGPPGVGKTTIARLLAD 75

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
           E  ++F   S      P + K  + A +        +LF+DEIHR +   ++   P MED
Sbjct: 76  ETDLHFVQISAIFTGVPELRKVFEAAKMRRQNGKGTLLFVDEIHRFNKAQQDGFLPYMED 135

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             + L+    E PS       LSR  +   T                        + DL+
Sbjct: 136 GTILLVGATTENPSFELNAALLSRAQVFILTR---------------------LTLADLE 174

Query: 190 TIVQRGAKLTG--LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            + QR  +  G  L +   A   +   + G  R    L+ +V   A       +TR+   
Sbjct: 175 LLAQRAEQEMGRALPLDGPAREALLDMADGDGRALLNLIEQV---AAWKTETKLTRDDLT 231

Query: 248 AALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
             L++ A   DK G +  +L                   ISA     R +  D    +  
Sbjct: 232 KRLMKRAVKYDKSGDEHYNL-------------------ISALHKSVRGSDPDAALYWFA 272

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +       PR   R +  +A + +G+  P 
Sbjct: 273 RMLAGGEDPRYLARRITRMAVEDIGLADPQ 302


>gi|318606281|emb|CBY27779.1| ATPase, AAA family [Yersinia enterocolitica subsp. palearctica Y11]
          Length = 444

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 72/337 (21%), Positives = 118/337 (35%), Gaps = 42/337 (12%)

Query: 8   LSRNVSQED--ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           +S + SQ +     + +RP TLE++ GQ    +  K    A  A    L  ++  GPPG 
Sbjct: 1   MSLDFSQNEFQPLAARMRPLTLEQYIGQQHLLAPGKPLSRAIVAGQ--LHSMILWGPPGT 58

Query: 66  GKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GKTTLA+++ R    +    S        I +A + A    +   R +LF+DE+HR +  
Sbjct: 59  GKTTLAEIIGRYGQADVERISAVTSGIKEIREAIERARQNRDAGRRTILFVDEVHRFNKS 118

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++   P +ED  +  +    E PS       LSR  +             +        
Sbjct: 119 QQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKALTAADIEKV-------- 170

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
                 IE   +  +RG     + + DE    ++    G  R A   L  + D AE+   
Sbjct: 171 ------IEQAMSDSRRGYGGQNIKLPDETRRMMSELVGGDARRALNSLEMMADMAEIDAN 224

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
                       +         ++ D  Y               + ISA     R +  D
Sbjct: 225 GVRVLTPDLLKEVSGERSARFDNKGDRYY---------------DLISAVHKSIRGSAPD 269

Query: 299 LIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
               +  +       P    R L+ IA + +G   P 
Sbjct: 270 AALYWYARIITAGGDPLYVARRLLAIASEDIGNADPR 306


>gi|297568672|ref|YP_003690016.1| AAA ATPase central domain protein [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296924587|gb|ADH85397.1| AAA ATPase central domain protein [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 461

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 79/348 (22%), Positives = 126/348 (36%), Gaps = 38/348 (10%)

Query: 1   MMDREGLLSRNVSQEDAD----ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH 56
           M + +    +N  Q D         +RP  L++F GQ    ++ K+   A  +R   L  
Sbjct: 1   MSNSKTAARKNQPQRDQPTTPLAERMRPARLDDFVGQRHLLADDKLL--AGLSRHGYLPS 58

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAAL-------LTNLEDRDVL 109
           +L  GPPG GKTTLA+++A   G +F   S  V++   ++  +               VL
Sbjct: 59  LLLWGPPGSGKTTLARILAGGSGADFVFFSA-VLSGVKEIREIVERSRRIRAESGRGSVL 117

Query: 110 FIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           F+DEIHR +   ++   P +E   + L+    E PS   +   LSR  +I          
Sbjct: 118 FVDEIHRFNKSQQDAFLPHVEAGLITLIGATTENPSFHVIAPLLSRCRVIVL-------- 169

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
           NPL       I       E      +RG     L ++ EAA  +   + G  R     L 
Sbjct: 170 NPLAAEDLQIILERALSDE------ERGLGKLRLKISREAADHLISIADGDARSLLNSLE 223

Query: 228 RVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISA 287
                A+             A+       ++G   ++        R    G      ISA
Sbjct: 224 IAAALAQDQARGQT------ASQEIGGEVQIGLTTVEEAIQRHSLRYDADGEEHYNLISA 277

Query: 288 GLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                RD+  D    ++ +       P    R L+  A + +G   P 
Sbjct: 278 LHKSLRDSDPDGALYWLGRMLAAGEEPLYIARRLIRFASEDIGNADPQ 325


>gi|332162218|ref|YP_004298795.1| recombination factor protein RarA [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325666448|gb|ADZ43092.1| recombination factor protein RarA [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 444

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 72/337 (21%), Positives = 118/337 (35%), Gaps = 42/337 (12%)

Query: 8   LSRNVSQED--ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           +S + SQ +     + +RP TLE++ GQ    +  K    A  A    L  ++  GPPG 
Sbjct: 1   MSLDFSQNEFQPLAARMRPLTLEQYIGQQHLLAPGKPLPRAIVAGQ--LHSMILWGPPGT 58

Query: 66  GKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GKTTLA+++ R    +    S        I +A + A    +   R +LF+DE+HR +  
Sbjct: 59  GKTTLAEIIGRYGQADVERISAVTSGIKEIREAIERARQNRDAGRRTILFVDEVHRFNKS 118

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++   P +ED  +  +    E PS       LSR  +             +        
Sbjct: 119 QQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKALTAADIEKV-------- 170

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
                 IE   +  +RG     + + DE    ++    G  R A   L  + D AE+   
Sbjct: 171 ------IEQAMSDSRRGYGGQNIKLPDETRRMMSELVGGDARRALNSLEMMADMAEIDAN 224

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
                       +         ++ D  Y               + ISA     R +  D
Sbjct: 225 GVRVLTPDLLKEVSGERSARFDNKGDRYY---------------DLISAVHKSIRGSAPD 269

Query: 299 LIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
               +  +       P    R L+ IA + +G   P 
Sbjct: 270 AALYWYARIITAGGDPLYVARRLLAIASEDIGNADPR 306


>gi|225174582|ref|ZP_03728580.1| AAA ATPase central domain protein [Dethiobacter alkaliphilus AHT 1]
 gi|225169709|gb|EEG78505.1| AAA ATPase central domain protein [Dethiobacter alkaliphilus AHT 1]
          Length = 445

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 81/333 (24%), Positives = 124/333 (37%), Gaps = 63/333 (18%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            LRP+TLE F GQ       K      +  ++ L  +LF GPPG GKTTLA+++A +   
Sbjct: 21  RLRPKTLEGFAGQTHLVGEGKPLRRLIE--SDVLSSLLFYGPPGTGKTTLAEIIAEKTNA 78

Query: 81  NFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
            F   +  V +   +L   +            R VLF+DEIHR +   ++ L PA+E   
Sbjct: 79  AFVRVNA-VSSSVSELRKEMEAARNRLAQEGKRTVLFVDEIHRFNKAQQDALLPAVEKGI 137

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + L+    E P        LSR                                ED++ +
Sbjct: 138 VVLIGATTENPYFTVNAPLLSRMR---------------------IFPFEPLSAEDVRAL 176

Query: 192 VQRG-----AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE--VAHAKTITRE 244
           + R      A+L  +  TDEA   +AM + G  R A   L      A       K +   
Sbjct: 177 LVRAQSEPEARLETVEFTDEALDHLAMMANGDARTALNALEMAAALASPGEDGNKEVDIT 236

Query: 245 IADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           + + A+ R A   D+ G    D+                   ISA +   R +  D    
Sbjct: 237 LVEEAVQRRAVVYDRDGDTHYDV-------------------ISAFIKSVRGSDPDAALY 277

Query: 303 YMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           ++ +       P    R L+ +A + +G   PH
Sbjct: 278 WLARMLEAGEDPLFIARRLVILASEDIGNADPH 310


>gi|291281895|ref|YP_003498713.1| Replication-associated recombination protein A [Escherichia coli
           O55:H7 str. CB9615]
 gi|290761768|gb|ADD55729.1| Replication-associated recombination protein A [Escherichia coli
           O55:H7 str. CB9615]
          Length = 447

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 73/331 (22%), Positives = 116/331 (35%), Gaps = 50/331 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP  L ++ GQ    +  K    A +A    L  ++  GPPG GKTTLA+V+AR
Sbjct: 15  PLAARMRPENLAQYIGQQHLLAAGKPLPRAIEA--GYLHSMILWGPPGTGKTTLAEVIAR 72

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
               +    S        I +A + A    N   R +LF+DE+HR +   ++   P +ED
Sbjct: 73  YANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED 132

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATT-----RVGLLTNPLQDRFGIPIRLNFYE 184
             +  +    E PS       LSR  +    +        +LT  ++D+           
Sbjct: 133 GTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDK----------- 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
                    RG     + + DE    IA    G  R A   L  + D AEV  +     +
Sbjct: 182 --------TRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLK 233

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
                 +         ++ D  Y               + ISA     R +  D    + 
Sbjct: 234 PELLTEIAGERSARFDNKGDRFY---------------DLISALHKSVRGSAPDAALYWY 278

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +       P    R  + IA + +G   P 
Sbjct: 279 ARIITAGGDPLYVARRCLAIASEDVGNADPR 309


>gi|256028561|ref|ZP_05442395.1| recombination factor protein RarA [Fusobacterium sp. D11]
 gi|289766481|ref|ZP_06525859.1| ATPase [Fusobacterium sp. D11]
 gi|289718036|gb|EFD82048.1| ATPase [Fusobacterium sp. D11]
          Length = 407

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 68/339 (20%), Positives = 120/339 (35%), Gaps = 58/339 (17%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            L  +N    +     LRP++L++F GQ +      V           L + +F GPPG 
Sbjct: 2   NLFQKNYKNVEPLAYKLRPKSLDDFVGQEKLLGKDGVITRLIL--NSTLSNSIFYGPPGC 59

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLS 118
           GK++L ++++  L  NF   +    A   D+  ++            R +LF+DEIHR +
Sbjct: 60  GKSSLGEIISNTLDCNFEKLNA-TTASVSDIRNVVETARRNIELYNKRTILFLDEIHRFN 118

Query: 119 IIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
              ++ L    ED  L L+    E P        LSR                      +
Sbjct: 119 KNQQDALLSYTEDGTLTLIGATTENPYYNINNALLSRV---------------------M 157

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
                    ED+  ++ +G     ++++D+    I   S+G  RIA   +          
Sbjct: 158 VFEFKALTNEDILKLINKGLNFLNISMSDKIKEIIVDISQGDSRIALNYVEMY------- 210

Query: 237 HAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAI 296
                T+   D         ++ FD+   +Y               + ISA +   R + 
Sbjct: 211 -DNIHTQMSEDEIFSIFKERQVSFDKKQDKY---------------DMISAFIKSVRGSD 254

Query: 297 EDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            D    ++ +       P+   R L   A + +G+  P 
Sbjct: 255 PDAAVYWLARLLDGGEDPKYMARRLFIEASEDIGMANPE 293


>gi|15893618|ref|NP_346967.1| recombination factor protein RarA [Clostridium acetobutylicum ATCC
           824]
 gi|15023171|gb|AAK78307.1|AE007547_4 ATPase related to the helicase subunit of Holliday junction
           resolvase [Clostridium acetobutylicum ATCC 824]
 gi|325507740|gb|ADZ19376.1| recombination factor protein RarA [Clostridium acetobutylicum EA
           2018]
          Length = 443

 Score =  152 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 68/331 (20%), Positives = 125/331 (37%), Gaps = 51/331 (15%)

Query: 15  EDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           E+  ++  +RPR L ++ GQ       K      +   +++  ++  GPPG+GKTTLA +
Sbjct: 13  ENIPLAGRMRPRNLSDYIGQEHILEKGKALRNMLEK--DSITSMILWGPPGVGKTTLAMI 70

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYP 127
           +A     NF   S    +   ++  ++   E       R +LFIDEIHR +   ++   P
Sbjct: 71  IASTTKCNFVEFSAAT-SGIKEIKDIMIKAEKDRLFGIRTLLFIDEIHRFNKSQQDTFLP 129

Query: 128 AMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
            +E   + L+    E PS       LSR  +         +  PL +   + +  N    
Sbjct: 130 HVEKGDIILIGATTENPSFEVNSALLSRCRV--------FVLKPLSNNDIVKLLKNALTD 181

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
                   RG K   + ++++    IA+ S G  R A  +L      +++ H      + 
Sbjct: 182 -------TRGFKNKNIQISEDLLTLIAVYSNGDARTALNVLEMAVLSSKLEHGVVTINKG 234

Query: 246 ADAALLRLA---IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
                ++      DK G +  +L                   ISA     R++  D    
Sbjct: 235 ILEDCMQNKALIYDKNGEEHYNL-------------------ISALHKSMRNSDVDAAIY 275

Query: 303 YMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
           ++ +       P    R L+  + + +G+  
Sbjct: 276 WLARMLEGGEDPLYIARRLIRFSSEDIGVAD 306


>gi|237744015|ref|ZP_04574496.1| ATPase [Fusobacterium sp. 7_1]
 gi|260494399|ref|ZP_05814530.1| ATPase [Fusobacterium sp. 3_1_33]
 gi|229431244|gb|EEO41456.1| ATPase [Fusobacterium sp. 7_1]
 gi|260198545|gb|EEW96061.1| ATPase [Fusobacterium sp. 3_1_33]
          Length = 407

 Score =  152 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 68/339 (20%), Positives = 120/339 (35%), Gaps = 58/339 (17%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            L  +N    +     LRP++L++F GQ +      V           L + +F GPPG 
Sbjct: 2   NLFQKNYKNVEPLAYKLRPKSLDDFVGQEKLLGKDGVITRLIL--NSTLSNSIFYGPPGC 59

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLS 118
           GK++L ++++  L  NF   +    A   D+  ++            R +LF+DEIHR +
Sbjct: 60  GKSSLGEIISNTLDCNFEKLNA-TTASVSDIRNVVETARRNIELYNKRTILFLDEIHRFN 118

Query: 119 IIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
              ++ L    ED  L L+    E P        LSR                      +
Sbjct: 119 KNQQDALLSYTEDGTLTLIGATTENPYYNINNALLSRV---------------------M 157

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
                    ED+  ++ +G     ++++D+    I   S+G  RIA   +          
Sbjct: 158 VFEFKALTNEDILKLINKGLNFLNISMSDKIKEIIVDISQGDSRIALNYVEMY------- 210

Query: 237 HAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAI 296
                T+   D         ++ FD+   +Y               + ISA +   R + 
Sbjct: 211 -NNIHTQMSEDEIFSIFKERQVSFDKKQDKY---------------DMISAFIKSVRGSD 254

Query: 297 EDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            D    ++ +       P+   R L   A + +G+  P 
Sbjct: 255 PDAAVYWLARLLDGGEDPKYMARRLFIEASEDIGMANPE 293


>gi|161507635|ref|YP_001577589.1| recombination factor protein RarA [Lactobacillus helveticus DPC
           4571]
 gi|160348624|gb|ABX27298.1| putative chromosome segregation helicase [Lactobacillus helveticus
           DPC 4571]
          Length = 441

 Score =  152 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 73/349 (20%), Positives = 133/349 (38%), Gaps = 61/349 (17%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M  E L S     E+  ++  +RP+ L++F GQ     + K+  +  +   + +  ++  
Sbjct: 1   MKEESLFSLANQNENTPLADRVRPQNLDDFVGQENLIGHGKILRDLIEK--DRVPSLILW 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIH 115
           GPPG GKTTLA+++A+    +F + S        I K  + A       +R+++FIDEIH
Sbjct: 59  GPPGTGKTTLAEIIAKRTKAHFITFSAVTSSIKDIRKIMEEAEQNRQFGERNIVFIDEIH 118

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P +E   + L+    E P        LSR                    
Sbjct: 119 RFNKAQQDAFLPFVEQGSITLIGATTENPYFEVNSALLSR-------------------- 158

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKL------TGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
                 L+  +++D+  +++R  K         + V+DEA  +IA+   G  R +   L 
Sbjct: 159 -AKVFVLHSLKVDDIVLLLKRALKNPNGFPDLNVKVSDEALKQIAIFGNGDARSSLNTLE 217

Query: 228 RVRDFAEVAHAKTITREIADAAL---LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIET 284
                 + +    +  +     L     L  DK G +  +L                   
Sbjct: 218 IAVLNGKKSGKDVVIDDAVLKQLINVKSLRYDKHGEEHYNL------------------- 258

Query: 285 ISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
           ISA     R++  D    ++ +       P    R L+  A + +G+  
Sbjct: 259 ISALHKSMRNSDVDAAVYWVNRMIEGGEDPLYIARRLIRFASEDVGLAD 307


>gi|197250604|ref|YP_002145880.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197214307|gb|ACH51704.1| putative DNA recombination-associated ATPase RarA [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
          Length = 447

 Score =  152 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 72/326 (22%), Positives = 111/326 (34%), Gaps = 40/326 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP  L ++ GQ    +  K    A +A    L  ++  GPPG GKTTLA+V+AR
Sbjct: 15  PLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIAR 72

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
               +    S        I +A + A    N   R +LF+DE+HR +   ++   P +ED
Sbjct: 73  YASADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED 132

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             +  +    E PS       LSR  +    +        + D                 
Sbjct: 133 GTITFIGATTENPSFELNSALLSRARVYLLKSLTTDDIEQVLD--------------QAM 178

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
               RG     + + DE    IA    G  R A   L  + D AE   +       A  A
Sbjct: 179 QDKTRGYGDQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEADDSGKRVLLPALLA 238

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
            +         ++ D  Y               + ISA     R +  D    +  +   
Sbjct: 239 EIAGERSARFDNKGDRFY---------------DLISALHKSVRGSAPDAALYWYARIIT 283

Query: 310 IQRTPR--GRLLMPIAWQHLGIDIPH 333
               P    R  + IA + +G   P 
Sbjct: 284 AGGDPLYVARRCLAIASEDVGNADPR 309


>gi|325293302|ref|YP_004279166.1| recombination factor protein RarA [Agrobacterium sp. H13-3]
 gi|325061155|gb|ADY64846.1| recombination factor protein RarA [Agrobacterium sp. H13-3]
          Length = 438

 Score =  152 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 80/333 (24%), Positives = 120/333 (36%), Gaps = 51/333 (15%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
            V+        LRP+TL E TGQ        V        + +L  ++F GPPG GKTT+
Sbjct: 13  EVANRRPLADRLRPKTLAEVTGQPHLTGEEGVLRRMI--DSGSLGSMIFWGPPGTGKTTV 70

Query: 71  AQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           A++++ E G+ F   S        + K  + A        + +LF+DEIHR +   ++  
Sbjct: 71  ARLLSGEAGLAFEQISAIFSGVADLKKVFEAARTRRMNGRQTLLFVDEIHRFNRAQQDSF 130

Query: 126 YPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
            P MED  + L+    E PS       LSR                        +    +
Sbjct: 131 LPVMEDGTIILVGATTENPSFELNAALLSR---------------------ARVLTFGSH 169

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           + E L  +++R               E A  S    R+A    R V   AE         
Sbjct: 170 DEESLGELLKRA---EEAEGKPLPLTEEARASLI--RMADGDGRAVLTLAE--------- 215

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVG-IETISAGLSEPRDAIEDLIEP 302
           E+  AA      D  G      R +   A  +  G  G    ISA     R +  D    
Sbjct: 216 EVWRAARKDETFDTEGLT----RIVQRRAPVYDKGQDGHYNLISALHKSVRGSDPDAALY 271

Query: 303 YMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           Y+ +       P   GR L+ +A + +G+  P 
Sbjct: 272 YLCRMFDAGEDPLFIGRRLVRMAVEDIGLADPQ 304


>gi|319776484|ref|YP_004138972.1| ATPase [Haemophilus influenzae F3047]
 gi|319897261|ref|YP_004135456.1| atpase [Haemophilus influenzae F3031]
 gi|317432765|emb|CBY81130.1| predicted ATPase [Haemophilus influenzae F3031]
 gi|317451075|emb|CBY87308.1| predicted ATPase [Haemophilus influenzae F3047]
          Length = 446

 Score =  152 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 67/331 (20%), Positives = 115/331 (34%), Gaps = 51/331 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP  LE++ GQ       K   +A +A    +  ++  GPPG GKTTLA+++A+
Sbjct: 15  PLAARMRPTNLEQYFGQSHLIGEGKPLRKAIQAGH--IHSMILWGPPGTGKTTLAEIIAQ 72

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            +       S        I +A D A      + + +LF+DE+HR +   ++   P +ED
Sbjct: 73  RINAEVERISAVTSGIKEIREAIDRAKQNRLSDRKTILFVDEVHRFNKSQQDAFLPHIED 132

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             +  +    E PS       LSR  +    +        +              ++   
Sbjct: 133 GTVIFIGATTENPSFELNNALLSRARVYVLKSLRTAEIEQV--------------LQQAV 178

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
              +RG     L + +     +A    G  R+A   L  + D A+               
Sbjct: 179 EDPERGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMADETENGK--------- 229

Query: 250 LLRLAIDKMGFDQLDLRYLTMI-----ARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
                       ++D   L  +     AR    G    + ISA     R +  D    + 
Sbjct: 230 ------------KIDRTLLKEVLGERQARFDKQGDRFYDLISALHKSVRGSAPDAALYWY 277

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +       P    R L+ IA + +G   P 
Sbjct: 278 ARILTAGGDPLYVARRLLAIASEDVGNADPR 308


>gi|269218537|ref|ZP_06162391.1| replication-associated recombination protein A [Actinomyces sp.
           oral taxon 848 str. F0332]
 gi|269211648|gb|EEZ77988.1| replication-associated recombination protein A [Actinomyces sp.
           oral taxon 848 str. F0332]
          Length = 456

 Score =  152 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 80/334 (23%), Positives = 125/334 (37%), Gaps = 59/334 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RPRTL+E  GQ    +        A+A   A   V   GPPG GKTT A ++AR
Sbjct: 31  PLAARMRPRTLDEVVGQGHLLAEGSPLRRLAEASGGAPSSVFLWGPPGTGKTTFAYLIAR 90

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAM 129
               +F   S  V A   +L A+++    R        VLF+DE+HR +   ++ L PA+
Sbjct: 91  AGNRHFEEVSA-VSAGVKELRAVVSAARQRLATSGRETVLFVDEVHRFNRAQQDALLPAV 149

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E+  + L+    E PS   V   LSR                      + + L     ED
Sbjct: 150 ENGWVTLVAATTENPSFTVVSPLLSR---------------------SLLVTLKGLAEED 188

Query: 188 LKTIVQRGAKLT-----GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           ++T+V R  +        L++  +A   +   +    R +  LL    + A      TI 
Sbjct: 189 IRTLVARALEDERGFAGRLSIAADALDNLVRIAGRDGRRSLTLLEAAAEGARTRGETTIE 248

Query: 243 REIADAALL--RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
                 A     +  D+ G    D+                   +SA +   R +  D  
Sbjct: 249 LADVAKASDGATVRYDRAGDQHYDV-------------------VSAFIKSIRGSDVDAA 289

Query: 301 EPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
             Y+ +       PR   R LM  A + +G+  P
Sbjct: 290 MHYLARMLSAGEDPRFIARRLMISAAEDVGMADP 323


>gi|92113453|ref|YP_573381.1| recombination factor protein RarA [Chromohalobacter salexigens DSM
           3043]
 gi|91796543|gb|ABE58682.1| Recombination protein MgsA [Chromohalobacter salexigens DSM 3043]
          Length = 469

 Score =  152 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 81/335 (24%), Positives = 127/335 (37%), Gaps = 37/335 (11%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L + +          +RPR L+++ GQ       K     A+  + A+  ++  GPPG+G
Sbjct: 28  LFASSQPDNTPLAYRMRPRRLDDYVGQEALVGPGKPLRRMAE--SGAVRSMILWGPPGVG 85

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSII 120
           KTTLA ++A   G      S  V+A   D+ A +    +        +LF+DEIHRL+  
Sbjct: 86  KTTLADILADASGAMLERLSA-VMAGVKDIRAAVERAREGQVRGQPTLLFLDEIHRLNKS 144

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++ L P +E   L L+    E PS       LSR        RV +L     +     +
Sbjct: 145 QQDALLPHVESGLLTLIGATTENPSFEVNSALLSR-------ARVYVLRKLETEDLLRVL 197

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE-VAH 237
                + E       RG     +   +     +A  + G  R A  LL    DFAE    
Sbjct: 198 HQALADTE-------RGLGKRHIEADEGVLETLARSASGDARRALGLLETACDFAEPTEG 250

Query: 238 AKTITREIADAAL--LRLAIDKMGFDQLDLRYLTMIARNFGGG--PVGIETIS---AGLS 290
            + +T +     L     A DK G    D   L+ I ++         +  I+    G  
Sbjct: 251 GERLTLQALHEVLGHQASAFDKQGDHYYD--LLSAIHKSIRSSRPDAALLYIAQFTQGGG 308

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQ 325
           +P D +  L    +  +      PR   L+  AW 
Sbjct: 309 DPLDVVRRLAA--IASEDVGNAEPRALPLVMAAWD 341


>gi|307130789|ref|YP_003882805.1| recombination protein [Dickeya dadantii 3937]
 gi|306528318|gb|ADM98248.1| recombination protein [Dickeya dadantii 3937]
          Length = 447

 Score =  152 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 77/342 (22%), Positives = 120/342 (35%), Gaps = 42/342 (12%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M +     S N  Q     + +RP  L ++ GQ       K    A +A    L  ++  
Sbjct: 1   MSNLSLDFSSNQFQ--PLAARMRPAKLAQYIGQQHLLGPGKPLPRAIEAGQ--LHSMILW 56

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIH 115
           GPPG GKTTLA+++ R    +    S        I +A + A    +   R +LF+DE+H
Sbjct: 57  GPPGTGKTTLAELIGRYGQADVERISAVTSGIKEIREAIERARQNRDAGRRTILFVDEVH 116

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P +ED  +  +    E PS       LSR        RV LL     D 
Sbjct: 117 RFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSR-------ARVYLLKALSADD 169

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
               +     + E       RG     + + D+    +A    G  R +  LL  + D A
Sbjct: 170 IEQVLDQALQDKE-------RGLGGQQIVLPDDTRRLLAELVNGDARRSLNLLEMMADMA 222

Query: 234 EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
           EV  +       A    +         ++ D  Y               + ISA     R
Sbjct: 223 EVDASGQRVLTSALLKEVSGERSARFDNKGDRYY---------------DLISALHKSVR 267

Query: 294 DAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +  D    +  +       P    R L+ IA + +G   P 
Sbjct: 268 GSAPDAALYWYARIITAGGDPLYVARRLLAIASEDVGNADPR 309


>gi|313895502|ref|ZP_07829058.1| replication-associated recombination protein A [Selenomonas sp.
           oral taxon 137 str. F0430]
 gi|312975628|gb|EFR41087.1| replication-associated recombination protein A [Selenomonas sp.
           oral taxon 137 str. F0430]
          Length = 444

 Score =  152 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 76/352 (21%), Positives = 132/352 (37%), Gaps = 64/352 (18%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M +++GL  + + +       +RP TLE+F GQ       K+     +  ++ +  ++F 
Sbjct: 1   MDEQQGLFEQALHR--PLAERVRPHTLEDFVGQEHLLGKGKILRRLIE--SDQITSMIFW 56

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEI 114
           GPPG+GKTTLAQ++A      F + S  V     D+  ++   E       R ++F+DEI
Sbjct: 57  GPPGVGKTTLAQIIAARTKAEFITFSA-VSGGIKDIRTVMQEAERKRSYGQRVIIFVDEI 115

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++   P +E   + L+    E PS       LSR                   
Sbjct: 116 HRFNKAQQDAFLPFVEKGSIVLIGATTENPSFEINGALLSRCR----------------- 158

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKL------TGLAVTDEAACEIAMRSRGTPRIAGRLL 226
                  L   + ED++ ++ R A L        + ++++A   +A  + G  R A    
Sbjct: 159 ----VFVLQGLKTEDIRKLLLRAAALPSGLGGQKIDISEDAVLAVARFANGDARSALSTF 214

Query: 227 RRVRDFAEVAHAKTITREIADA---ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIE 283
             +   AE         E   A   +   L  DK G +  +L                  
Sbjct: 215 EMLILNAEEKDGIVTVTEENLAQCISRKSLLYDKTGEEHYNL------------------ 256

Query: 284 TISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            ISA     R++  D    ++ +       P    R +   A + +G+  P 
Sbjct: 257 -ISALHKSMRNSDPDAAVYWLARMLEAGEDPLYVARRVTRFAAEDVGLADPR 307


>gi|118591151|ref|ZP_01548550.1| AAA ATPase, central region [Stappia aggregata IAM 12614]
 gi|118436227|gb|EAV42869.1| AAA ATPase, central region [Stappia aggregata IAM 12614]
          Length = 434

 Score =  152 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 72/347 (20%), Positives = 118/347 (34%), Gaps = 59/347 (17%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D       + S        +RP  L +  GQ              K R   L  ++F 
Sbjct: 1   MSDLFEASGLSQSGPRPLADRMRPTRLADVVGQDHLLGPEGTLSRMLKTR--TLGSLIFW 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEI 114
           GPPG GKTT+A+++A E  + F   S  + +   DL  +      R       +LF+DEI
Sbjct: 59  GPPGTGKTTIARLLANETDLAFEQISA-IFSGVADLKKVFEAARARRMSGRATLLFVDEI 117

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++   P MED  + L+    E PS       LSR  ++               
Sbjct: 118 HRFNRAQQDSFLPVMEDGTITLVGATTENPSFELNAALLSRSHVM--------------- 162

Query: 173 RFGIPIRLNFYEIEDLKTIVQRG--AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
                   +    E ++ ++ R    +   L + ++A   +   + G  R +  L   V 
Sbjct: 163 ------TFHSLSAEAIEKLLARAEELEERKLPLDEDARRVLIRMADGDGRSSLTLAEDVW 216

Query: 231 DFAEVAHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAG 288
             A     +    E     + R A   DK      +L                   ISA 
Sbjct: 217 RAA--GQDEVFDAERLQEIVQRRAPIYDKSADGHYNL-------------------ISAL 255

Query: 289 LSEPRDAIEDLIEPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
               R +  D    +  +       P    R L+ +A + +G+  P+
Sbjct: 256 HKSVRGSDPDAALYWFCRMLDGGEDPLYLARRLIRMAVEDIGLADPN 302


>gi|206576595|ref|YP_002239455.1| putative DNA recombination-associated ATPase RarA [Klebsiella
           pneumoniae 342]
 gi|288936305|ref|YP_003440364.1| ATPase AAA [Klebsiella variicola At-22]
 gi|206565653|gb|ACI07429.1| putative DNA recombination-associated ATPase RarA [Klebsiella
           pneumoniae 342]
 gi|288891014|gb|ADC59332.1| AAA ATPase central domain protein [Klebsiella variicola At-22]
          Length = 447

 Score =  152 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 73/342 (21%), Positives = 115/342 (33%), Gaps = 42/342 (12%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M +     S N  Q     + +RP  L ++ GQ    +  K    A +A    L  ++  
Sbjct: 1   MSNLSLDFSDNAFQ--PLAARMRPENLAQYIGQQHLLAPGKPLPRAIEAGH--LHSMILW 56

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIH 115
           GPPG GKTTLA+V+AR    +    S        I +A + A    N   R +LF+DE+H
Sbjct: 57  GPPGTGKTTLAEVIARYASADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVH 116

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P +ED  +  +    E PS       LSR  +    +        + D 
Sbjct: 117 RFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLTTDDIERVLD- 175

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                               RG     + + +E    IA    G  R A   L  + D A
Sbjct: 176 -------------QAMNDKSRGYGGQDIILPEETRKAIAELVNGDARRALNTLEMMADMA 222

Query: 234 EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
           E   +     +      +         ++ D  Y               + ISA     R
Sbjct: 223 ESDDSGKRVLKAELLTEIAGERSARFDNKGDRFY---------------DLISALHKSVR 267

Query: 294 DAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +  D    +  +       P    R  + IA + +G   P 
Sbjct: 268 GSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPR 309


>gi|88798710|ref|ZP_01114293.1| hypothetical protein MED297_15939 [Reinekea sp. MED297]
 gi|88778473|gb|EAR09665.1| hypothetical protein MED297_15939 [Reinekea sp. MED297]
          Length = 439

 Score =  152 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 73/327 (22%), Positives = 119/327 (36%), Gaps = 49/327 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
               +LRP+TL ++ GQ       K   +  + R   L  ++F GPPG+GKTTLA V++ 
Sbjct: 13  PLAEVLRPQTLTDYIGQQHILGPGKPLRQTLENRN--LHSMIFWGPPGVGKTTLANVISN 70

Query: 77  ELGVNFRSTSGPVIAKAGDL------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
            +   F   S  V A   D+      A       +  VLF+DE+HR +   ++   P +E
Sbjct: 71  TVEARFEVLSA-VQAGVKDIKLVAEKAKQAQAYGEVTVLFVDEVHRFNKAQQDAFLPYVE 129

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +     +    E PS       LSR  +    +        L  R               
Sbjct: 130 NGTFIFIGATTENPSFELNSALLSRARVYVLKSFTDDDFRQLWQR--------------A 175

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +++ +R AKL   A+ ++A   +   + G  R     L    DF                
Sbjct: 176 RSLDERIAKL---AIENDALDGLIQFADGDARRFLNFLEIAIDF------------FTSE 220

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ- 307
           A++ L   +        R+         GG    + ISA     R +  D    ++ +  
Sbjct: 221 AVITLDDIRELLSHQPRRF-------DKGGENFYDQISAFHKSVRGSSPDGALYWLCRML 273

Query: 308 -GFIQRTPRGRLLMPIAWQHLGIDIPH 333
            G I      R ++ IA + +G   P 
Sbjct: 274 DGGIDPLYLARRMVRIASEDIGNADPR 300


>gi|332759806|gb|EGJ90109.1| ATPase family associated with various cellular activities family
           protein [Shigella flexneri 4343-70]
 gi|333006990|gb|EGK26485.1| ATPase family associated with various cellular activities family
           protein [Shigella flexneri K-218]
          Length = 447

 Score =  152 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 72/331 (21%), Positives = 116/331 (35%), Gaps = 50/331 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP  L ++ GQ    +  K    A +A    L  ++  GPPG GKTTLA+V+AR
Sbjct: 15  PLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIAR 72

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
               +    S        I +A + A    N   R +LF+DE+HR +   ++   P +ED
Sbjct: 73  YANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED 132

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATT-----RVGLLTNPLQDRFGIPIRLNFYE 184
             +  +    E PS       LSR  +    +        +LT  ++D+           
Sbjct: 133 GTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDK----------- 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
                    RG     + + D+    IA    G  R A   L  + D AEV  +     +
Sbjct: 182 --------TRGYGGQDIVLPDDTRRAIAELVNGDARRALNTLEMMADMAEVYDSGKRVLK 233

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
                 +         ++ D  Y               + ISA     R +  D    + 
Sbjct: 234 PELLIEIAGERSARFDNKGDRFY---------------DLISALHKSVRGSAPDAALYWY 278

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +       P    R  + IA + +G   P 
Sbjct: 279 ARIITAGGDPLYVARRCLAIASEDVGNADPR 309


>gi|229817989|ref|ZP_04448271.1| hypothetical protein BIFANG_03276 [Bifidobacterium angulatum DSM
           20098]
 gi|229784593|gb|EEP20707.1| hypothetical protein BIFANG_03276 [Bifidobacterium angulatum DSM
           20098]
          Length = 458

 Score =  152 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 85/364 (23%), Positives = 133/364 (36%), Gaps = 73/364 (20%)

Query: 2   MDREGLLSRNVSQED---ADISLLRPRTLEEFTGQVEACSNLKVFIE----AAKARAEAL 54
           M  + L   + + ED        +RP TL+E  GQ                A+K    A 
Sbjct: 1   MSEQDLFGASEAPEDMTRPLAVRMRPHTLDEVVGQSHVLGQGSPLRRLANPASKGSLTAP 60

Query: 55  DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------D 107
             ++  GPPG+GKTTLA +VA++ G  F   S  V +   D+  +L    +R        
Sbjct: 61  SSIILFGPPGVGKTTLATIVAKQSGREFEELSA-VTSGVKDVRDVLDRAHERLVSQGKET 119

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGL 165
           VLFIDE+HR S   ++ L PA+E+  +  +    E PS   +K  LSR  ++   +    
Sbjct: 120 VLFIDEVHRFSKSQQDALLPAVENRDVTFIGATTENPSFSVIKPLLSRSVVVKLES---- 175

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK-----LTGLAVTDEAACEIAMRSRGTPR 220
                             E + LK ++ R  +        +   D+A  EI   + G  R
Sbjct: 176 -----------------LEPDQLKELIVRALESPKGLQGEVKANDDAIDEIVRMAGGDAR 218

Query: 221 IAGRLLRRVR-----DFAEVAHAKTITREIADAALLRL----AIDKMGFDQLDLRYLTMI 271
            +  +L         D A    A+         + +        DK G D  D+      
Sbjct: 219 KSLTILEAAAGAVTGDKARRKGARKPIITPDVVSTVMDTATVRYDKDGDDHYDV------ 272

Query: 272 ARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGI 329
                        ISA +   R +  D    Y+ +       PR   R +M  A + +G+
Sbjct: 273 -------------ISAFIKSMRGSDPDAAIHYLARMIRAGEDPRFIARRIMIAAAEEVGM 319

Query: 330 DIPH 333
             P 
Sbjct: 320 AAPQ 323


>gi|271500827|ref|YP_003333852.1| AAA ATPase central domain-containing protein [Dickeya dadantii
           Ech586]
 gi|270344382|gb|ACZ77147.1| AAA ATPase central domain protein [Dickeya dadantii Ech586]
          Length = 447

 Score =  152 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 75/335 (22%), Positives = 117/335 (34%), Gaps = 40/335 (11%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           L  +  Q     + +RP TL ++ GQ       K    A +A    L  ++  GPPG GK
Sbjct: 6   LDFSSQQFQPLAARMRPVTLAQYIGQQHLLGPGKPLPRAIEAGQ--LHSMILWGPPGTGK 63

Query: 68  TTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           TTLA+++      +    S        I +A + A    +   R +LF+DE+HR +   +
Sbjct: 64  TTLAELIGHYGQADVERISAVTSGIKEIREAIERARQNRDAGRRTILFVDEVHRFNKSQQ 123

Query: 123 EILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +   P +ED  +  +    E PS       LSR        RV LL     D     +  
Sbjct: 124 DAFLPHIEDGTITFIGATTENPSFELNSALLSR-------ARVYLLKALSVDDIEQVLLQ 176

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
              + E       RG     + + DE    +A    G  R +  LL  + D AEV     
Sbjct: 177 ALQDKE-------RGLGEQQIVLPDETRRLLAELVNGDARRSLNLLEMMADMAEVDATGR 229

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
               +     +         ++ D  Y               + ISA     R +  D  
Sbjct: 230 RLLTLELLKEVSGERSARFDNKGDRYY---------------DLISALHKSVRGSAPDAA 274

Query: 301 EPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
             +  +       P    R L+ IA + +G   P 
Sbjct: 275 LYWYARIITAGGDPLYVARRLLAIASEDVGNADPR 309


>gi|333008794|gb|EGK28254.1| ATPase family associated with various cellular activities family
           protein [Shigella flexneri K-272]
 gi|333020322|gb|EGK39588.1| ATPase family associated with various cellular activities family
           protein [Shigella flexneri K-227]
          Length = 447

 Score =  152 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 73/331 (22%), Positives = 116/331 (35%), Gaps = 50/331 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP  L ++ GQ    +  K    A +A    L  ++  GPPG GKTTLA+V+AR
Sbjct: 15  PLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIAR 72

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
               +    S        I +A + A    N   R +LF+DE+HR +   ++   P +ED
Sbjct: 73  YANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED 132

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATT-----RVGLLTNPLQDRFGIPIRLNFYE 184
             +  +    E PS       LSR  +    +        +LT  ++D+           
Sbjct: 133 GTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDK----------- 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
                    RG     + + D+    IA    G  R A   L  + D AEV  +     +
Sbjct: 182 --------TRGYGGQDIVLPDDTRRAIAELVNGDARRALNTLEMMADMAEVYDSGKRVLK 233

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
                 +         ++ D  Y               E ISA     R +  D    + 
Sbjct: 234 PELLTEIAGERSARFDNKGDRFY---------------ELISALHKSVRGSAPDAALYWY 278

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +       P    R  + IA + +G   P 
Sbjct: 279 ARIITAGGDPLYVARRCLAIASEDVGNADPR 309


>gi|15800755|ref|NP_286769.1| recombination factor protein RarA [Escherichia coli O157:H7 EDL933]
 gi|25329891|pir||G85614 probable polynucleotide enzyme ycaJ [imported] - Escherichia coli
           (strain O157:H7, substrain EDL933)
 gi|12514054|gb|AAG55379.1|AE005278_5 putative polynucleotide enzyme [Escherichia coli O157:H7 str.
           EDL933]
          Length = 447

 Score =  152 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 73/331 (22%), Positives = 115/331 (34%), Gaps = 50/331 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP  L ++ GQ    +  K    A +A    L  ++  GPPG GKTTLA+V+AR
Sbjct: 15  PLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIAR 72

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
               +    S        I +A + A    N   R +LF+DE+HR +   ++   P +ED
Sbjct: 73  YANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED 132

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATT-----RVGLLTNPLQDRFGIPIRLNFYE 184
             +  +    E PS       LSR  +    +        +LT  ++D+           
Sbjct: 133 GTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDK----------- 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
                    RG     + + DE    IA    G  R A   L  + D AEV  +      
Sbjct: 182 --------TRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLX 233

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
                 +         ++ D  Y               + ISA     R +  D    + 
Sbjct: 234 PELLTEIAGERSARFDNKGDRFY---------------DLISALHKSVRGSAPDAALYWY 278

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +       P    R  + IA + +G   P 
Sbjct: 279 ARIITAGGDPLYVARRCLAIASEDVGNADPR 309


>gi|146278540|ref|YP_001168699.1| recombination factor protein RarA [Rhodobacter sphaeroides ATCC
           17025]
 gi|145556781|gb|ABP71394.1| Recombination protein MgsA [Rhodobacter sphaeroides ATCC 17025]
          Length = 437

 Score =  152 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 76/337 (22%), Positives = 120/337 (35%), Gaps = 58/337 (17%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
                       LRP+ L+E  GQ +  S        A   + +L  ++  GPPG+GKTT
Sbjct: 12  AQPDAPRPLADRLRPKALDEVIGQEKVLSPDGPL--GAMLASGSLSSLILWGPPGVGKTT 69

Query: 70  LAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           +A+++A+E  + F   S      P + K  + A L        +LF+DEIHR +   ++ 
Sbjct: 70  IARLLAKETDLAFVQISAIFTGVPDLRKVFEAARLRRANGQGTLLFVDEIHRFNKAQQDG 129

Query: 125 LYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             P MED  + L+    E PS       +SR  +I                         
Sbjct: 130 FLPHMEDGTILLVGATTENPSFELNAALMSRAQVIVL---------------------ER 168

Query: 183 YEIEDLKTIVQRGAKLTG--LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
             + DL+ + QR     G  L +   A   +   + G  R    LL  V           
Sbjct: 169 LSLADLERLAQRAEHELGRALPLDGPAREALLEMADGDGR---ALLNLVEQVMAWKVKGH 225

Query: 241 ITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
           + R+     L+R A   DK G +  +L                   ISA     R +  D
Sbjct: 226 LDRDQVATRLMRRAAKYDKSGEEHYNL-------------------ISALHKSVRGSDPD 266

Query: 299 LIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
               +  +       PR   R +  +A + +G+  P 
Sbjct: 267 AALYWFARMLEGGEDPRFLARRITRMAVEDIGLADPQ 303


>gi|238763313|ref|ZP_04624277.1| Replication-associated recombination protein A [Yersinia
           kristensenii ATCC 33638]
 gi|238698412|gb|EEP91165.1| Replication-associated recombination protein A [Yersinia
           kristensenii ATCC 33638]
          Length = 447

 Score =  152 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 72/337 (21%), Positives = 117/337 (34%), Gaps = 42/337 (12%)

Query: 8   LSRNVSQED--ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           +S + SQ +     + +RP TLE++ GQ    +  K    A  A    L  ++  GPPG 
Sbjct: 4   MSLDFSQNEFQPLAARMRPLTLEQYIGQQHLLAPGKPLPRAIVAGQ--LHSMILWGPPGT 61

Query: 66  GKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GKTTLA+++ R    +    S        I +A + A    +   R +LF+DE+HR +  
Sbjct: 62  GKTTLAEIIGRYGQADVERISAVTSGIKEIREAIERARQNRDAGRRTILFVDEVHRFNKS 121

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++   P +ED  +  +    E PS       LSR  +             +        
Sbjct: 122 QQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKALTAADIEKV-------- 173

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
                 IE   +   RG     + + DE    ++    G  R A   L  + D AE+   
Sbjct: 174 ------IEQAMSDSSRGYGGQNIKLPDETRRMMSELVGGDARRALNSLEMMADMAEIDAN 227

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
                       +         ++ D  Y               + ISA     R +  D
Sbjct: 228 GVRVLTPDLLKEVSGERSARFDNKGDRYY---------------DLISAVHKSIRGSAPD 272

Query: 299 LIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
               +  +       P    R L+ IA + +G   P 
Sbjct: 273 AALYWYARIITAGGDPLYVARRLLAIASEDIGNADPR 309


>gi|315651448|ref|ZP_07904471.1| replication-associated recombination protein A [Eubacterium
           saburreum DSM 3986]
 gi|315486268|gb|EFU76627.1| replication-associated recombination protein A [Eubacterium
           saburreum DSM 3986]
          Length = 440

 Score =  152 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 75/346 (21%), Positives = 132/346 (38%), Gaps = 52/346 (15%)

Query: 2   MDREGLLSRNVSQED--ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           MD    + + V+++D     S LRP +L+   GQ       K    A KA  + L  ++F
Sbjct: 1   MDLFDYM-KEVNEKDSAPLASRLRPDSLDMVVGQEHILGKDKFLYRAIKA--DKLSSIIF 57

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAAL------LTNLEDRDVLFIDE 113
            GPPG GKTT+A+V+A     NF+  +     K     A+      ++  + + +LFIDE
Sbjct: 58  FGPPGCGKTTIAKVIANTTKSNFKQINATTAGKKEMEEAISEAKISISMYKKKTILFIDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++ L P +ED  + L+    E P     K  +SR  ++            + 
Sbjct: 118 IHRFNKSQQDYLLPFVEDGTIILIGATTENPFFEVNKALISRSRVLELKPISYNDIESIL 177

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
           ++                   +RG     L +++EA   I+  + G  R A   L     
Sbjct: 178 NK--------------AIKDKERGMGKYELDISEEAIEFISKNADGDARNALNALELAIL 223

Query: 232 FAEVAHAKTITREIADAA----LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISA 287
             +++    I  +I   +       L  DK G    D+                   +SA
Sbjct: 224 TTDISADGKIHIDINIISECIQKKVLKYDKDGNGHYDI-------------------VSA 264

Query: 288 GLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
            +   R +  D    Y+ +  +     +   R ++  A + +G+  
Sbjct: 265 FIKSMRGSDPDATMYYLAKMLYAGEDIKFIARRIVICAAEDVGLAD 310


>gi|262041005|ref|ZP_06014226.1| replication-associated recombination protein A [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
 gi|259041640|gb|EEW42690.1| replication-associated recombination protein A [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
          Length = 447

 Score =  152 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 74/342 (21%), Positives = 116/342 (33%), Gaps = 42/342 (12%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M +     S N  Q     + +RP  L ++ GQ    +  K    A +A    L  ++  
Sbjct: 1   MSNLSLDFSDNAFQ--PLAARMRPENLAQYIGQQHLLAPGKPLPRAIEAGH--LHSMILW 56

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIH 115
           GPPG GKTTLA+V+AR    +    S        I +A + A    N+  R +LF+DE+H
Sbjct: 57  GPPGTGKTTLAEVIARYASADVERISAVTSGVKEIREAIERARQNRNVGRRTILFVDEVH 116

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P +ED  +  +    E PS       LSR  +    +        + D 
Sbjct: 117 RFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLTTDDIERVLD- 175

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                               RG     + + DE    IA    G  R A   L  + D A
Sbjct: 176 -------------QAMNDKTRGYGGQDIILPDETRRAIAELVNGDARRALNTLEMMADMA 222

Query: 234 EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
           E   +     +      +         ++ D  Y               + ISA     R
Sbjct: 223 ESDDSGKRVLKAELLTEIAGERSARFDNKGDRFY---------------DLISALHKSVR 267

Query: 294 DAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +  D    +  +       P    R  + IA + +G   P 
Sbjct: 268 GSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPR 309


>gi|228960671|ref|ZP_04122316.1| hypothetical protein bthur0005_41330 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228799035|gb|EEM46007.1| hypothetical protein bthur0005_41330 [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 476

 Score =  152 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 79/340 (23%), Positives = 130/340 (38%), Gaps = 43/340 (12%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           ++R+ +L   V  +      +RP  ++E  GQ       K+     +A       ++  G
Sbjct: 37  IERDYILRETVQMKQPLAHRMRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYG 94

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSI 119
           PPG GKT++A  +A   G  FR  +  V     D+  ++   +     VL +DE+HRL  
Sbjct: 95  PPGTGKTSIASAIAGSTGTPFRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDK 153

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             ++ L P +E   L L+      P         SR  +           + L +   + 
Sbjct: 154 AKQDFLLPHLESGLLTLIGATTSNPFHAINSAIRSRCQIFEL--------HALTEEDILI 205

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR--DFAEV 235
                 E +      ++G     + VTDEA    A  S G  R A   L       F   
Sbjct: 206 GLKRALEDK------EKGLGEYAVTVTDEALHHFANASGGDMRSAYNALELAVLSSFTTD 259

Query: 236 AHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
             A  IT EIA+  L + +   DK G    D+  L+   ++  G  V             
Sbjct: 260 DQAAEITLEIAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDV------------N 305

Query: 294 DAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            A+  L    +I+ G +Q    GR L+ +A++ +G+  P 
Sbjct: 306 AALHYLAR--LIEAGDLQSI--GRRLLIMAYEDIGLASPQ 341


>gi|237809054|ref|YP_002893494.1| recombination factor protein RarA [Tolumonas auensis DSM 9187]
 gi|237501315|gb|ACQ93908.1| AAA ATPase central domain protein [Tolumonas auensis DSM 9187]
          Length = 448

 Score =  152 bits (384), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 70/332 (21%), Positives = 114/332 (34%), Gaps = 54/332 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP  L+++ GQ    +  K    A +A       ++  GPPG GKTTLA+++AR
Sbjct: 14  PLAARMRPERLDQYIGQSHLLAEGKPLRRAIEAGH--CHSMILWGPPGTGKTTLAELMAR 71

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130
               +    S  V +   ++ A +   +D      R +LF+DE+HR +   ++   P +E
Sbjct: 72  YCQADVERISA-VTSGVKEIRAAIDRAKDNSYRARRTLLFVDEVHRFNKSQQDAFLPHIE 130

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           D  +  +    E PS       LSR  +         L   L D     +          
Sbjct: 131 DGTIIFVGATTENPSFELNNALLSRARV--------YLLKRLTDEEIYQVVQQALTDP-- 180

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
                RG     L   +     +     G  R A   L  + D A+              
Sbjct: 181 -----RGLASEQLQFDEGVLKALVQLVDGDARKALNYLELLNDMADS------------- 222

Query: 249 ALLRLAIDKMGFDQLDLRYLTM-----IARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
                   + G   +D   L       +AR    G V  + ISA     R +       +
Sbjct: 223 --------QSGIKHIDRHLLAAVSGEKVARFDNQGDVYYDLISAFHKSIRGSDPQAGLYW 274

Query: 304 MIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
             +       P    R L+ IA + +G   P+
Sbjct: 275 YARIVAAGGDPLYVARRLLAIASEDIGNADPN 306


>gi|293433189|ref|ZP_06661617.1| replication-associated recombination protein A [Escherichia coli
           B088]
 gi|291324008|gb|EFE63430.1| replication-associated recombination protein A [Escherichia coli
           B088]
          Length = 447

 Score =  152 bits (384), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 73/331 (22%), Positives = 115/331 (34%), Gaps = 50/331 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP  L ++ GQ    +  K    A +A    L  ++  GPPG GKTTLA+V+AR
Sbjct: 15  PLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIAR 72

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
               +    S        I +A + A    N   R +LF+DE+HR +   ++   P +ED
Sbjct: 73  YANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED 132

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATT-----RVGLLTNPLQDRFGIPIRLNFYE 184
             +  +    E PS       LSR  +    +        +LT  ++D+           
Sbjct: 133 GTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDK----------- 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
                    RG     + + DE    IA    G  R A   L  + D AEV        +
Sbjct: 182 --------TRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDRGKRVLK 233

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
                 +         ++ D  Y               + ISA     R +  D    + 
Sbjct: 234 PELLTEIAGERSARFDNKGDRFY---------------DLISALHKSVRGSAPDAALYWY 278

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +       P    R  + IA + +G   P 
Sbjct: 279 ARIITAGGDPLYVARRCLAIASEDVGNADPR 309


>gi|84499813|ref|ZP_00998101.1| ATPase, AAA family protein [Oceanicola batsensis HTCC2597]
 gi|84392957|gb|EAQ05168.1| ATPase, AAA family protein [Oceanicola batsensis HTCC2597]
          Length = 435

 Score =  152 bits (384), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 78/344 (22%), Positives = 120/344 (34%), Gaps = 54/344 (15%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D         +        LRPR L +  GQ +               + +L  ++F 
Sbjct: 1   MTDLFDQPGAEQTAPRPLADRLRPRRLADVIGQEQVLGPEAPL--GVMLASGSLSSLVFW 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIH 115
           GPPG+GKTT+A+++A E  + F   S        + K  + A          +LF+DEIH
Sbjct: 59  GPPGVGKTTIARLLADETDLEFIQISAIFSGVADLKKVFEAAIQRRRAGQGTLLFVDEIH 118

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P MED  + L+    E PS       LSR  ++              +R
Sbjct: 119 RFNKAQQDGFLPHMEDGTILLVGATTENPSFELNAALLSRAQVLVL------------ER 166

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
            G          EDL+ ++QR     G  +    A    +R          LL  V   A
Sbjct: 167 LG---------PEDLERLLQRAEAEIGQELELTDAARATLREMADGD-GRALLNLVEQVA 216

Query: 234 EVAHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
                  +T E     L+R A   DK G +  +L                   ISA    
Sbjct: 217 AWRVKAPLTPEELSTRLMRRAAKYDKSGEEHYNL-------------------ISALHKS 257

Query: 292 PRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            R +  D    +  +       PR   R +  +A + +G+  P 
Sbjct: 258 VRGSDPDAALYWFGRMLAGGEDPRFLARRITRMAVEDIGLADPQ 301


>gi|317491440|ref|ZP_07949876.1| ATPase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920987|gb|EFV42310.1| ATPase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 447

 Score =  152 bits (384), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 80/337 (23%), Positives = 125/337 (37%), Gaps = 42/337 (12%)

Query: 8   LSRNVSQED--ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           LS + SQ +     + +RP TL+++ GQ    +  K    A +A    L  ++  GPPG 
Sbjct: 4   LSLDFSQNEFQPLAARMRPETLKQYIGQRHLLAVGKPLPRAIEAGH--LHSMILWGPPGT 61

Query: 66  GKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GKTTLA+++ R    +    S        I +A + A    +   R +LF+DE+HR +  
Sbjct: 62  GKTTLAELIGRYGNADVERISAVTSGIKEIREAIERARHNRDAGRRTILFVDEVHRFNKS 121

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++   P +ED  +  +    E PS       LSR        RV LL     D     +
Sbjct: 122 QQDAFLPHIEDGTITFIGATTENPSFELNSALLSR-------ARVYLLKALTSDDIIEVL 174

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
                + E       RG     + + D+    IA    G  R A   L  + D AEV  +
Sbjct: 175 NQAMADKE-------RGYGGQNIVLPDDTRNMIAELVGGDARRALNTLEMMADMAEVDAS 227

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
                      L  ++ ++              AR    G    + ISA     R +  D
Sbjct: 228 GNRVLTPNL--LKEVSGERS-------------ARFDNKGDRFYDLISALHKSVRGSSPD 272

Query: 299 LIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
               +  +       P    R L+ IA + +G   P 
Sbjct: 273 AALYWYARIITAGGDPLYVARRLLAIASEDVGNADPR 309


>gi|329965400|ref|ZP_08302324.1| ATPase, AAA family [Bacteroides fluxus YIT 12057]
 gi|328522192|gb|EGF49306.1| ATPase, AAA family [Bacteroides fluxus YIT 12057]
          Length = 423

 Score =  152 bits (384), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 78/330 (23%), Positives = 126/330 (38%), Gaps = 53/330 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP+TL+++ GQ        V  +   A    +   +  GPPG+GKTTLAQ++A 
Sbjct: 3   PLAERLRPKTLDDYIGQKHLVGPGAVLRKMIDA--GRISSFILWGPPGVGKTTLAQIIAN 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAM 129
           +L   F + S  V +   D+  ++   +          +LFIDEIHR S   ++ L  A+
Sbjct: 61  KLDTPFYTLSA-VTSGVKDVRDVIERAKSNRFFSQSSPILFIDEIHRFSKSQQDSLLGAV 119

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E   + L+    E PS   ++  LSR  L    +        L  R              
Sbjct: 120 EQGTVTLIGATTENPSFEVIRPLLSRCQLYVLKSLEKDDLQELLQR------------AI 167

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
              IV    K   + + +  A  +   S G  R    +L  V + +E++    IT E+  
Sbjct: 168 TTDIV---LKERKIELEETTA--MLRYSGGDARKLLNILELVVE-SEISDPVVITDEMVT 221

Query: 248 AALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
             L +   A DK G    D+                   ISA +   R +  D    ++ 
Sbjct: 222 ERLQQNPLAYDKDGEMHYDI-------------------ISAFIKSIRGSDPDGAIYWLA 262

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +       P    R L+  A + +G+  P+
Sbjct: 263 RMVEGGEDPAFIARRLVISASEDIGLANPN 292


>gi|229111872|ref|ZP_04241418.1| hypothetical protein bcere0018_41160 [Bacillus cereus Rock1-15]
 gi|229146970|ref|ZP_04275334.1| hypothetical protein bcere0012_41090 [Bacillus cereus BDRD-ST24]
 gi|228636569|gb|EEK93035.1| hypothetical protein bcere0012_41090 [Bacillus cereus BDRD-ST24]
 gi|228671628|gb|EEL26926.1| hypothetical protein bcere0018_41160 [Bacillus cereus Rock1-15]
          Length = 476

 Score =  152 bits (384), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 79/340 (23%), Positives = 130/340 (38%), Gaps = 43/340 (12%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           ++R+ +L   V  +      +RP  ++E  GQ       K+     +A       ++  G
Sbjct: 37  IERDYILRETVQMKQPLAHRMRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYG 94

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSI 119
           PPG GKT++A  +A   G  FR  +  V     D+  ++   +     VL +DE+HRL  
Sbjct: 95  PPGTGKTSIASAIAGSTGTPFRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDK 153

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             ++ L P +E   L L+      P         SR  +           + L +   + 
Sbjct: 154 AKQDFLLPHLESGLLTLIGATTSNPFHAINSAIRSRCQIFEL--------HALTEEDILI 205

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR--DFAEV 235
                 E +      ++G     + VTDEA    A  S G  R A   L       F   
Sbjct: 206 GLKRALEDK------EKGLGEYAVTVTDEALHHFANASGGDMRSAYNALELAVLSSFTTD 259

Query: 236 AHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
             A  IT EIA+  L + +   DK G    D+  L+   ++  G  V             
Sbjct: 260 DQAAEITLEIAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDV------------N 305

Query: 294 DAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            A+  L    +I+ G +Q    GR L+ +A++ +G+  P 
Sbjct: 306 AALHYLAR--LIEAGDLQSI--GRRLLIMAYEDIGLASPQ 341


>gi|95930182|ref|ZP_01312921.1| AAA ATPase, central region [Desulfuromonas acetoxidans DSM 684]
 gi|95133876|gb|EAT15536.1| AAA ATPase, central region [Desulfuromonas acetoxidans DSM 684]
          Length = 439

 Score =  152 bits (384), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 84/342 (24%), Positives = 134/342 (39%), Gaps = 56/342 (16%)

Query: 7   LLSRNVSQEDADI-SLLRPRTLEEFTGQVEACS---NLKVFIEAAKARAEALDHVLFVGP 62
           L S  +S +   +   +RP+ L+E  GQ    +    L+  IEA     + L  ++F GP
Sbjct: 3   LFSSTISDDQTPLAERMRPQHLDEVVGQQHLLADGCPLRQIIEA-----DQLSSLIFWGP 57

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIH 115
           PG GKTTLAQV+A+     F   S  ++    D+  +++  ++       R +LF+DEIH
Sbjct: 58  PGTGKTTLAQVIAQSTRSRFVFFSA-IMNGVKDIRHIVSRAKEDRSMYGTRTILFVDEIH 116

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   PA+E   L L+    E PS       LSR        RV +L     D 
Sbjct: 117 RFNKSQQDAFLPALEKGDLILIGATTENPSFEVNAALLSR-------ARVFVLKPLQHDD 169

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
             + ++    +         RG       V+ EA   +A  ++G  R+A   L+ V    
Sbjct: 170 IVLLLQRALSDP--------RGLADQKPDVSQEALDHLAQLAQGDARVALGNLQLVV--- 218

Query: 234 EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
           E A  K I        L + A+                 R   G       ISA +   R
Sbjct: 219 ETAKGKPIDEAAISQTLQQKAL-----------------RYDKGAEEHYNVISAFIKSVR 261

Query: 294 DAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +  D    ++ +       P    R L+ +A + +G   P 
Sbjct: 262 GSNPDGALYWLARMIEAGEDPLFIARRLVILAAEDIGNADPR 303


>gi|332288542|ref|YP_004419394.1| recombination factor protein RarA [Gallibacterium anatis UMN179]
 gi|330431438|gb|AEC16497.1| recombination factor protein RarA [Gallibacterium anatis UMN179]
          Length = 445

 Score =  152 bits (384), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 77/341 (22%), Positives = 127/341 (37%), Gaps = 47/341 (13%)

Query: 6   GLLSRNVSQED--ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
             L  N S +D     + +RP +L+ + GQ    S  K   +A ++    +  ++F GPP
Sbjct: 2   ETLDLNFSGDDFRPLAARMRPTSLDNYFGQSHLVSKGKPLRKAIESGN--IHSMIFWGPP 59

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRL 117
           G GKTTLA+++A  L       S  V +   ++   +   +         +LF+DE+HR 
Sbjct: 60  GTGKTTLAEIIAHRLNAKVEYLSA-VTSGVKEIREAIERAKQNQFAGQQTLLFVDEVHRF 118

Query: 118 SIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
           +   ++   P +ED  +  +    E PS       LSR        RV LL +   D   
Sbjct: 119 NKSQQDAFLPYIEDGTIIFIGATTENPSFELNSALLSR-------ARVYLLKSLNIDEIV 171

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
             ++    +        Q G     + + D     +A    G  R+A   L  + D AE 
Sbjct: 172 EVLQRALQDK-------QFGYGNQIINLEDGLLAMLAEYVNGDARLALNCLELMVDMAEE 224

Query: 236 A-HAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRD 294
               K +T+++    L         FD+   RY               + ISA     R 
Sbjct: 225 TPKGKLLTKQLLVDTLGERQAH---FDKQGDRY--------------YDLISALHKSVRG 267

Query: 295 AIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +  D    +  +       P    R L+ IA + +G   P 
Sbjct: 268 SAPDAALYWYARIITAGGDPLYVARRLLAIASEDIGNADPR 308


>gi|188495408|ref|ZP_03002678.1| ATPase, AAA family [Escherichia coli 53638]
 gi|188490607|gb|EDU65710.1| ATPase, AAA family [Escherichia coli 53638]
          Length = 447

 Score =  152 bits (384), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 73/331 (22%), Positives = 115/331 (34%), Gaps = 50/331 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP  L ++ GQ    +  K    A +A    L  ++  GPPG GKTTLA+V+AR
Sbjct: 15  PLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIAR 72

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
               +    S        I +A + A    N   R +LF+DE+HR +   ++   P +ED
Sbjct: 73  YANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED 132

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATT-----RVGLLTNPLQDRFGIPIRLNFYE 184
             +  +    E PS       LSR  +    +        +LT  ++D+           
Sbjct: 133 GTITFIGATTENPSFELNSALLSRARIYLLKSLSTEDIEQVLTQAMEDK----------- 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
                    RG     + + DE    IA    G  R A   L  + D AEV        +
Sbjct: 182 --------TRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDRGKRVLK 233

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
                 +         ++ D  Y               + ISA     R +  D    + 
Sbjct: 234 PELLTEIAGERSARFDNKGDRFY---------------DLISALHKSVRGSAPDAALYWY 278

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +       P    R  + IA + +G   P 
Sbjct: 279 ARIITAGGDPLYVARRCLAIASEDVGNADPR 309


>gi|290968723|ref|ZP_06560261.1| recombination factor protein RarA [Megasphaera genomosp. type_1
           str. 28L]
 gi|290781376|gb|EFD93966.1| recombination factor protein RarA [Megasphaera genomosp. type_1
           str. 28L]
          Length = 439

 Score =  152 bits (384), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 79/351 (22%), Positives = 133/351 (37%), Gaps = 64/351 (18%)

Query: 3   DREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVL 58
           D   L + ++ +    ++  +RP TLEE  GQ +       L+V IE      + +  +L
Sbjct: 5   DLFSLAAADLHRTIRPLAVRMRPDTLEEIFGQEQLTGPGAFLRVMIE-----KDMVPSLL 59

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFI 111
           F GP G+GKTTLA V+A E    F + +  V++   DL  ++   +        R ++FI
Sbjct: 60  FYGPSGVGKTTLAHVIAAETKCKFVNLNA-VMSGTADLRRVIETAKQDIQIYQKRTLVFI 118

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFT-----LIAATTRVG 164
           DEIHR +   ++IL P +E+  + L+    E P     +  LSR        ++    V 
Sbjct: 119 DEIHRFNKSQQDILLPHVENGTIILIGATTENPYFEVNRPLLSRLRVIVLPPLSVQAVVA 178

Query: 165 LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGR 224
           +L   L+D                    ++G     +   DE    +A  +    R+A  
Sbjct: 179 VLRRALRDE-------------------EKGLGQQRITAADETLQSLARLADCDARMALN 219

Query: 225 LLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIET 284
           LL +V          T +             DK G    D                   T
Sbjct: 220 LLEQVCALLPAGGRITSSYLAKVVGQRAYTYDKGGDAHYD-------------------T 260

Query: 285 ISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +SA +   R +  D    Y+ +      +P    R ++  A + +G+  P 
Sbjct: 261 VSAFIKSMRGSDPDGALHYLARMIEAGESPAFIARRIVICAAEDVGLADPQ 311


>gi|258515784|ref|YP_003192006.1| recombination factor protein RarA [Desulfotomaculum acetoxidans DSM
           771]
 gi|257779489|gb|ACV63383.1| AAA ATPase central domain protein [Desulfotomaculum acetoxidans DSM
           771]
          Length = 422

 Score =  152 bits (384), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 81/346 (23%), Positives = 136/346 (39%), Gaps = 58/346 (16%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           E  + R++++     + +RP++LEEF  Q            + +   ++L  ++F GPPG
Sbjct: 5   EHAMERDMAKAAPLAARMRPKSLEEFEEQSTIVGPGTTLRRSIE--NDSLMSMIFFGPPG 62

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRL 117
            GKT LA ++A     +F + +  V+A  GD+  ++   + R        VLFIDEIHR 
Sbjct: 63  TGKTALANIIASMTKSHFETINA-VMAGVGDIRRVVDEAQKRRSYYGEKTVLFIDEIHRF 121

Query: 118 SIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLS-----RFTLIAATTRVGLLTNPL 170
           +   ++ L P +E+  + L+    E P     +  LS     RF L++    V LL   L
Sbjct: 122 NKAQQDALLPFVENGLITLIGSTTENPMFSVNRPILSRSQLYRFELLSTEAIVRLLQRAL 181

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
           QDR                    RG          EA   +A  S G  R A   L    
Sbjct: 182 QDRN-------------------RGLGNYNTGADPEALPYLAEISNGDARAALNALELAV 222

Query: 231 --DFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAG 288
                E   ++ +T      AL +       ++Q D  Y               + +SA 
Sbjct: 223 ITTVPEENGSRKLTLATVQEALQKRLP---KYNQKDEHY---------------DVVSAF 264

Query: 289 LSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           +   R +  D    ++ +  +    P+   R +M  A + +G+  P
Sbjct: 265 IKSMRGSDPDATLYWLARLLYAGEDPQFISRRIMIHAAEDVGLADP 310


>gi|309973263|gb|ADO96464.1| Recombination factor RarA [Haemophilus influenzae R2846]
          Length = 446

 Score =  152 bits (384), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 70/331 (21%), Positives = 119/331 (35%), Gaps = 51/331 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP +LE++ GQ       K   +A +A    +  ++  GPPG GKTTLA+++A+
Sbjct: 15  PLAAKMRPTSLEQYFGQSHLIGEGKPLRKAIQAGH--IHSMILWGPPGTGKTTLAEIIAQ 72

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            +       S        I +A + A      + + +LF+DE+HR +   ++   P +ED
Sbjct: 73  RINAEVERISAVTSGIKEIREAIERAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIED 132

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             +  +    E PS       LSR        RV +L +         ++    + E   
Sbjct: 133 GTVIFIGATTENPSFELNNALLSR-------ARVYVLKSLTTAEIEQVLQQAVEDPE--- 182

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
               RG     L + +     +A    G  R+A   L  + D A+               
Sbjct: 183 ----RGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMADETENGK--------- 229

Query: 250 LLRLAIDKMGFDQLDLRYLTMI-----ARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
                       ++D   L  +     AR    G    + ISA     R +  D    + 
Sbjct: 230 ------------KIDRTLLKEVLGERQARFDKQGDRFYDLISALHKSVRGSAPDAALYWY 277

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +       P    R L+ IA + +G   P 
Sbjct: 278 ARILTAGGDPLYVVRRLLAIASEDVGNADPR 308


>gi|268590184|ref|ZP_06124405.1| replication-associated recombination protein A [Providencia
           rettgeri DSM 1131]
 gi|291314464|gb|EFE54917.1| replication-associated recombination protein A [Providencia
           rettgeri DSM 1131]
          Length = 447

 Score =  152 bits (384), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 73/342 (21%), Positives = 117/342 (34%), Gaps = 52/342 (15%)

Query: 8   LSRNVSQED--ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           LS + SQ +     + +RP TLE++ GQ    +  K    A KA    L  ++  GPPG 
Sbjct: 4   LSLDFSQNEFQPLAARMRPETLEQYIGQKHLLAEGKPLPRAIKAGH--LHSMILWGPPGT 61

Query: 66  GKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GKTTLA+++      +    S        I ++ + A    +   R +LF+DE+HR +  
Sbjct: 62  GKTTLAEIIGNYAQADIERISAVTSGIKEIRESIEKARQNRSAGRRTILFVDEVHRFNKS 121

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATT-----RVGLLTNPLQDR 173
            ++   P +ED  +  +    E PS       LSR  +    +        +L   L D 
Sbjct: 122 QQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLEENDIEQVLLQALADS 181

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                               RG     + + D     +A    G  R +  LL  + D A
Sbjct: 182 -------------------SRGLGGQNIVLPDNTRKMVAQLVNGDARRSLNLLEMMADMA 222

Query: 234 EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
           E                +         ++ D  Y               + ISA     R
Sbjct: 223 EADSQGQRILTADLLKEVSGERTARFDNKGDRYY---------------DLISALHKSIR 267

Query: 294 DAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +  D    +  +       P    R L+ IA + +G   P 
Sbjct: 268 GSAPDAALYWFARIITAGGDPLYVARRLLAIASEDVGNADPR 309


>gi|320175333|gb|EFW50439.1| recombination factor protein RarA [Shigella dysenteriae CDC
           74-1112]
          Length = 447

 Score =  152 bits (384), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 72/331 (21%), Positives = 116/331 (35%), Gaps = 50/331 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP  L ++ GQ    +  K    A +A    L  ++  GPPG GKTTLA+V+AR
Sbjct: 15  PLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIAR 72

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
               +    S        I +A + A    N   R +LF+DE+HR +   ++   P +ED
Sbjct: 73  YANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED 132

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATT-----RVGLLTNPLQDRFGIPIRLNFYE 184
             +  +    E PS       LSR  +    +        +LT  ++D+           
Sbjct: 133 GTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDK----------- 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
                    RG     + + DE    I+    G  R A   L  + D AEV  +     +
Sbjct: 182 --------TRGYGGQDIVLPDETRRAISELVNGDARRALNTLEMMADMAEVDDSGKRVLK 233

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
                 +         ++ D  Y               + ISA     R +  D    + 
Sbjct: 234 PELLTEIAGERSARFDNKGDRFY---------------DLISALHKSVRGSAPDAALYWY 278

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +       P    R  + IA + +G   P 
Sbjct: 279 ARIITAGGDPLYVARRCLAIASEDVGNADPR 309


>gi|283784714|ref|YP_003364579.1| ATPase [Citrobacter rodentium ICC168]
 gi|282948168|emb|CBG87735.1| putative ATPase [Citrobacter rodentium ICC168]
          Length = 447

 Score =  152 bits (384), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 74/326 (22%), Positives = 111/326 (34%), Gaps = 40/326 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP  L ++ GQ    +  K    A +A    L  ++  GPPG GKTTLA+V+AR
Sbjct: 15  PLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIAR 72

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
               +    S        I +A + A    N   R +LF+DE+HR +   ++   P +ED
Sbjct: 73  YANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED 132

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             +  +    E PS       LSR  +    +        +                   
Sbjct: 133 GTITFIGATTENPSFELNSALLSRARVYLLKSLTAEDIEQVLS--------------QAM 178

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
               RG     + + DE    IA    G  R A   L  + D AEV  +          A
Sbjct: 179 EDKTRGYGDQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVL---LPA 235

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           LL     +              AR    G    + ISA     R +  D    +  +   
Sbjct: 236 LLTEIAGERS------------ARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIIT 283

Query: 310 IQRTPR--GRLLMPIAWQHLGIDIPH 333
               P    R  + IA + +G   P 
Sbjct: 284 AGGDPLYVARRCLAIASEDVGNADPR 309


>gi|225568918|ref|ZP_03777943.1| hypothetical protein CLOHYLEM_04997 [Clostridium hylemonae DSM
           15053]
 gi|225162417|gb|EEG75036.1| hypothetical protein CLOHYLEM_04997 [Clostridium hylemonae DSM
           15053]
          Length = 445

 Score =  152 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 73/345 (21%), Positives = 131/345 (37%), Gaps = 50/345 (14%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M+ +  L  N  +     S LRP +L++F GQ       ++  +      + +  ++F G
Sbjct: 1   MNEQLSLFDNERELTPLASRLRPESLDDFAGQEHLLGPGRLLRQLIDK--DQISSMIFWG 58

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIH 115
           PPG+GKTTLA+++AR    +F   S  V +   ++  +++  E       R ++F+DEIH
Sbjct: 59  PPGVGKTTLARIIARRTKADFIDFSA-VTSGIKEIKEVMSKAEKDRHAGIRTLVFVDEIH 117

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P +E   + L+    E PS       LSR  +         +   L ++
Sbjct: 118 RFNKAQQDAFLPYVEKGSIILIGATTENPSFEINAALLSRCKV--------FVLQALTEK 169

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
             + +  +             G     + +T E+   IA  + G  R A   L       
Sbjct: 170 DLLRLLGHALSSPA-------GFGHLNVDITPESLQMIAGFANGDARTALNTLEMAVLNG 222

Query: 234 EVAHAKTITRE---IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
           E+   KTI  +       +   L  DK G +  +L                   ISA   
Sbjct: 223 ELTPEKTIVTKASIEQCISRKSLLYDKNGEEHYNL-------------------ISALHK 263

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
             R++  D    ++ +       P    R L+  A + +G+    
Sbjct: 264 SMRNSDPDAAVYWLSRMLEAGEDPLYVARRLVRFASEDVGMADSQ 308


>gi|329123991|ref|ZP_08252538.1| replication-associated recombination protein A [Haemophilus
           aegyptius ATCC 11116]
 gi|327467416|gb|EGF12914.1| replication-associated recombination protein A [Haemophilus
           aegyptius ATCC 11116]
          Length = 446

 Score =  152 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 70/331 (21%), Positives = 118/331 (35%), Gaps = 51/331 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP  LE++ GQ       K   +A +A    +  ++  GPPG GKTTLA+++A+
Sbjct: 15  PLAARMRPTNLEQYFGQSHLIGEGKPLRKAIQAGH--IHSMILWGPPGTGKTTLAEIIAQ 72

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            +       S        I +A + A      + + +LF+DE+HR +   ++   P +ED
Sbjct: 73  RINAEVERISAVTSGIKEIREAIERAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIED 132

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             +  +    E PS       LSR        RV +L +         ++    + E   
Sbjct: 133 GTVIFIGATTENPSFELNNALLSR-------ARVYVLKSLTTAEIEQVLQQAVEDPE--- 182

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
               RG     L + +     +A    G  R+A   L  + D A+               
Sbjct: 183 ----RGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMADETENGK--------- 229

Query: 250 LLRLAIDKMGFDQLDLRYLTMI-----ARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
                       ++D   L  +     AR    G    + ISA     R +  D    + 
Sbjct: 230 ------------KIDRTLLKEVLGERQARFDKQGDRFYDLISALHKSVRGSAPDAALYWY 277

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +       P    R L+ IA + +G   P 
Sbjct: 278 ARILTAGGDPLYVVRRLLAIASEDVGNADPR 308


>gi|302347025|ref|YP_003815323.1| recombination factor protein RarA [Prevotella melaninogenica ATCC
           25845]
 gi|302150622|gb|ADK96883.1| recombination factor protein RarA [Prevotella melaninogenica ATCC
           25845]
          Length = 405

 Score =  152 bits (383), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 76/331 (22%), Positives = 124/331 (37%), Gaps = 53/331 (16%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +     LRPRTL+++ GQ        V        +  +   +  GPPG+GKTTLAQ++A
Sbjct: 2   EPLAERLRPRTLDDYIGQEHLVGEGAVLRRMI--DSGRIASFILWGPPGVGKTTLAQIIA 59

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPA 128
             L   F + S  V +   D+  ++   +          +LFIDEIHR S   ++ L  A
Sbjct: 60  NRLETPFYTLSA-VTSGVKDVRDVIERAQSGRFFNSASPILFIDEIHRFSKSQQDSLLGA 118

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           +E   + L+    E PS   ++  LSR  L    +        L  R             
Sbjct: 119 VEKGTVTLIGATTENPSFEVIRPLLSRCQLYTLKSLEKDDLLKLLHR------------- 165

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
            +   V+   K   + + +  A      S G  R    +L  +   AE  +   IT ++ 
Sbjct: 166 AITEDVE--LKKRHIELHETGAL--LRYSGGDARKLLNILDLII-SAESGNDVVITDKMV 220

Query: 247 DAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +  L     A DK G    D+                   ISA +   R +  D    +M
Sbjct: 221 EERLQENPLAYDKDGEMHYDI-------------------ISAFIKSIRGSDPDAALYWM 261

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +       P+   R ++  A + +G+  P+
Sbjct: 262 ARMIEGGEDPKFIARRVVISAAEDIGLANPN 292


>gi|254504344|ref|ZP_05116495.1| ATPase, AAA family protein [Labrenzia alexandrii DFL-11]
 gi|222440415|gb|EEE47094.1| ATPase, AAA family protein [Labrenzia alexandrii DFL-11]
          Length = 434

 Score =  152 bits (383), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 76/345 (22%), Positives = 118/345 (34%), Gaps = 55/345 (15%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D         S        +RP  LE+  GQ              K R   L  ++F 
Sbjct: 1   MSDLFEASGLAASAPRPLADRMRPARLEDVVGQDHLLGPEGTLSRMLKTR--TLGSLIFW 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEI 114
           GPPG GKTT+A+++A E  + F   S  + +   DL  +      R       +LF+DEI
Sbjct: 59  GPPGTGKTTIARLLANETDLAFEQISA-IFSGVADLKKVFEAARARRMGGRATLLFVDEI 117

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++   P MED  + L+    E PS       LSR  ++   +        L  
Sbjct: 118 HRFNRAQQDSFLPVMEDGTITLVGATTENPSFELNAALLSRSHVMTFQSLNKGAIEQLLA 177

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R               + + +R      L + +EA   +   + G  R A  L   V   
Sbjct: 178 R--------------AEEVEER-----KLPLDEEARGVLIRMADGDGRSALTLAEDVWRA 218

Query: 233 AEVAHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
           +  A  +    E     + R A   DK      +L                   ISA   
Sbjct: 219 S--AEDEVFDAERLQEIVQRRAPIYDKGADGHYNL-------------------ISALHK 257

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
             R +  D    +  +       P    R L+ +A + +G+  P+
Sbjct: 258 SVRGSDPDASLYWFCRMLDGGEDPMYLARRLIRMAVEDIGLADPN 302


>gi|320528982|ref|ZP_08030074.1| recombination factor protein RarA [Selenomonas artemidis F0399]
 gi|320138612|gb|EFW30502.1| recombination factor protein RarA [Selenomonas artemidis F0399]
          Length = 447

 Score =  152 bits (383), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 76/352 (21%), Positives = 132/352 (37%), Gaps = 64/352 (18%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M +++GL  + + +       +RP TLE+F GQ       K+     +  ++ +  ++F 
Sbjct: 4   MDEQQGLFEQALHR--PLAERVRPHTLEDFVGQEHLLGKGKILRRLIE--SDQITSMIFW 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEI 114
           GPPG+GKTTLAQ++A      F + S  V     D+  ++   E       R ++F+DEI
Sbjct: 60  GPPGVGKTTLAQIIAARTKAEFITFSA-VSGGIKDIRTVMQEAERKRSYGQRVIIFVDEI 118

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++   P +E   + L+    E PS       LSR                   
Sbjct: 119 HRFNKAQQDAFLPFVEKGSIVLIGATTENPSFEINGALLSRCR----------------- 161

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKL------TGLAVTDEAACEIAMRSRGTPRIAGRLL 226
                  L   + ED++ ++ R A L        + ++++A   +A  + G  R A    
Sbjct: 162 ----VFVLQGLKTEDIRKLLLRAAALPSGLGGQKIDISEDAVLAVARFANGDARSALSTF 217

Query: 227 RRVRDFAEVAHAKTITREIADA---ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIE 283
             +   AE         E   A   +   L  DK G +  +L                  
Sbjct: 218 EMLILNAEEKDGIVTVTEENLAQCISRKSLLYDKTGEEHYNL------------------ 259

Query: 284 TISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            ISA     R++  D    ++ +       P    R +   A + +G+  P 
Sbjct: 260 -ISALHKSMRNSDPDAAVYWLARMLEAGEDPLYVARRVTRFAAEDVGLADPR 310


>gi|123441839|ref|YP_001005822.1| recombination factor protein RarA [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122088800|emb|CAL11606.1| putative ATPase protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 447

 Score =  152 bits (383), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 71/337 (21%), Positives = 117/337 (34%), Gaps = 42/337 (12%)

Query: 8   LSRNVSQED--ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           +S + SQ +     + +RP TLE++ GQ    +  K    A  A    L  ++  GPPG 
Sbjct: 4   MSLDFSQNEFQPLAARMRPLTLEQYIGQQHLLAPGKPLPRAIVAGQ--LHSMILWGPPGT 61

Query: 66  GKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GKTTLA+++ R    +    S        I +A + A    +   R +LF+DE+HR +  
Sbjct: 62  GKTTLAEIIGRYGQADVERISAVTSGIKEIREAIERARQNRDAGRRTILFVDEVHRFNKS 121

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++   P +ED  +  +    E PS       LSR  +             + D      
Sbjct: 122 QQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKALTAADIEKVID------ 175

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
                      +   RG     + + DE    ++    G  R A   L  + D AE+  +
Sbjct: 176 --------QAMSDSSRGYGGQNIKLPDETRRMMSELVGGDARRALNSLEMMADMAEIDAS 227

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
                       +         ++ D  Y               + ISA     R +  D
Sbjct: 228 GVRVLTPDLLKEVSGERSARFDNKGDRYY---------------DLISAVHKSIRGSAPD 272

Query: 299 LIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
               +  +       P    R L+ IA + +G   P 
Sbjct: 273 AALYWYARIITAGGDPLYVARRLLAIASEDIGNADPR 309


>gi|114320863|ref|YP_742546.1| recombination factor protein RarA [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114227257|gb|ABI57056.1| Recombination protein MgsA [Alkalilimnicola ehrlichii MLHE-1]
          Length = 461

 Score =  152 bits (383), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 80/327 (24%), Positives = 119/327 (36%), Gaps = 48/327 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RPRTL+EF GQ       +   E    RA     ++  GPPG GKTTLA++VA 
Sbjct: 35  PLADRMRPRTLDEFIGQDHILGEGRSLREGI--RAGRPHSMILWGPPGTGKTTLARLVAE 92

Query: 77  ELGVNFRSTSGPVIAKAGDLAAL------LTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
                F + S  V+A   D+ A       +     R +LF+DE+HR +   ++   P +E
Sbjct: 93  AAEARFLTLSA-VMAGVKDIRAAMEEATRVRAAGGRTLLFVDEVHRFNKAQQDAFLPWVE 151

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           D  +  +    E PS       LSR  +               D   I   +     E  
Sbjct: 152 DGTVIFIGATTENPSFELNNALLSRARVYVLRAL---------DEVAIEGIVRQALAEP- 201

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
               +RG     + +TD+A   +   + G  R A   L    D AE   + T+       
Sbjct: 202 ----ERGYGG-RVRLTDDALRLVVRAADGDARRALTTLEIAADLAE---SDTVDEAAIRE 253

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           A   +A     FD               GG    E ISA     R +  D    +  +  
Sbjct: 254 A---VAGGTRRFD--------------KGGDAFYEQISALHKSVRGSDPDATLYWFCRML 296

Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIPH 333
                P   GR ++ +A + +G   P 
Sbjct: 297 DGGCDPLYIGRRVIRMASEDIGNADPR 323


>gi|49475767|ref|YP_033808.1| recombination factor protein RarA [Bartonella henselae str.
           Houston-1]
 gi|49238574|emb|CAF27815.1| ATPase, aaa family [Bartonella henselae str. Houston-1]
          Length = 439

 Score =  152 bits (383), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 79/347 (22%), Positives = 127/347 (36%), Gaps = 58/347 (16%)

Query: 2   MDREGLLSR---NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M+++  +S     V ++      +RP +L + TGQ        +        A ++  ++
Sbjct: 1   MNKDLFISSFDHRVYKKQPLAERMRPHSLNDVTGQSHLVGEKGLLSR--IVAAGSIGSMI 58

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFID 112
           F GPPG GKTT+A+++A E    F   S  +     +L  +  + + R       VLF+D
Sbjct: 59  FWGPPGTGKTTVARLLALETNFAFEQVSA-IFTGVAELKKIFESAQARFMSGSQTVLFVD 117

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           EIHR +   ++   P MED  + L+    E PS       LSR                 
Sbjct: 118 EIHRFNRAQQDSFLPVMEDGTVILIGATTENPSFELNAALLSR----------------- 160

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQR--GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
                  +    ++ E L  +++R    +   L + D A   +   S G  R A  L   
Sbjct: 161 ----ARVLTFLPHDNESLGMLLKRAEALEEKTLPLDDNARDVLIDMSDGDARAALTLAEE 216

Query: 229 VRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAG 288
           V   A          EI DAA LR  + +                   G       ISA 
Sbjct: 217 VWSVA-------RPGEIFDAAALRKIVQRRA------------PIYDKGRDGHYNLISAL 257

Query: 289 LSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
               R +  D    Y+ +       P   GR L+ +A + +G+  P 
Sbjct: 258 HKSVRGSDPDAALYYLARMFDAGEDPLYIGRRLVRMAVEDVGLADPQ 304


>gi|229086962|ref|ZP_04219119.1| hypothetical protein bcere0022_35350 [Bacillus cereus Rock3-44]
 gi|228696338|gb|EEL49166.1| hypothetical protein bcere0022_35350 [Bacillus cereus Rock3-44]
          Length = 435

 Score =  152 bits (383), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 79/335 (23%), Positives = 129/335 (38%), Gaps = 43/335 (12%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           +L   V+ +      +RP  ++E  GQ       K+     +A       ++  GPPG G
Sbjct: 1   MLRETVTMKQPLAHRMRPTNIKEIIGQEHLVGEGKILWRMVQANH--FQSMILYGPPGTG 58

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEI 124
           KT++A  +A   G  FR  +  V     D+  ++   +     VL +DE+HRL    ++ 
Sbjct: 59  KTSIASAIAGSTGTPFRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDF 117

Query: 125 LYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           L P +E   L L+      P         SR        ++  L    +DR  I ++   
Sbjct: 118 LLPHLESGLLTLIGATTSNPFHAINSAIRSRC-------QIFELHALTEDRILIGLKRAL 170

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR--DFAEVAHAKT 240
            + E       +G     + VTDEA    A  S G  R A   L       F        
Sbjct: 171 IDKE-------KGLGEYNVTVTDEALHHFANASGGDMRSAYNALELAVLSSFTTDDQEVE 223

Query: 241 ITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
           IT +IA+  L + +   DK G    D+  L+   ++  G  V              A+  
Sbjct: 224 ITLDIAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDV------------NAALHY 269

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           L    +I+ G +Q    GR L+ +A++ +G+  P 
Sbjct: 270 LAR--LIEAGDLQSI--GRRLLIMAYEDIGLASPQ 300


>gi|323144222|ref|ZP_08078854.1| replication-associated recombination protein A [Succinatimonas
           hippei YIT 12066]
 gi|322415997|gb|EFY06699.1| replication-associated recombination protein A [Succinatimonas
           hippei YIT 12066]
          Length = 475

 Score =  152 bits (383), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 66/327 (20%), Positives = 111/327 (33%), Gaps = 43/327 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              S +RP +L+++ GQ       +    A + +      ++F GPPG+GKTTLA ++A+
Sbjct: 32  PLASRMRPESLDDYIGQSHLIGPGRPLRMALERKQSY--SMIFWGPPGVGKTTLALIIAK 89

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAME 130
             G      S  V +   D+ A +           R VLF+DE+HR +   ++   P +E
Sbjct: 90  SSGAVLEQISA-VTSGVKDIRAAIDRAMSRKRQGVRTVLFVDEVHRFNKSQQDAFLPYIE 148

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +  +  +    E PS       LSR  +             L                  
Sbjct: 149 NGTIIFIGATTENPSFELNSALLSRARVYVLKKLSPEELKALLHH--------------- 193

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
               ++G K   L + D+    +   S G  R     L  + D A      +     A  
Sbjct: 194 ALESEKGLKSENLVLADKVEDALIDLSEGDGRHLLNTLEMLVDLAAPYKDGSKIITFAMV 253

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
             +                   + +   GG    + ISA     R +  D    +  +  
Sbjct: 254 GAVAGRR---------------LIKYDKGGDAYYDLISAFHKSVRGSAPDAALYWYSRIL 298

Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIPH 333
                P    R L+ IA + +G+  P 
Sbjct: 299 AAGGDPLYVARRLLAIATEDVGLADPR 325


>gi|238789330|ref|ZP_04633117.1| Replication-associated recombination protein A [Yersinia
           frederiksenii ATCC 33641]
 gi|238722662|gb|EEQ14315.1| Replication-associated recombination protein A [Yersinia
           frederiksenii ATCC 33641]
          Length = 444

 Score =  152 bits (383), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 71/337 (21%), Positives = 116/337 (34%), Gaps = 42/337 (12%)

Query: 8   LSRNVSQED--ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           +S + SQ +     + +RP TLE++ GQ    +  K    A  A    L  ++  GPPG 
Sbjct: 1   MSLDFSQNEFQPLAARMRPLTLEQYIGQQHLLAPGKPLPRAIVAGQ--LHSMILWGPPGT 58

Query: 66  GKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GKTTLA+++ R    +    S        I +A + A    +   R +LF+DE+HR +  
Sbjct: 59  GKTTLAEIIGRYGQADVERISAVTSGIKEIREAIERARQNRDAGRRTILFVDEVHRFNKS 118

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++   P +ED  +  +    E PS       LSR  +             + D      
Sbjct: 119 QQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKALTAEDIEKVID------ 172

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
                      +   RG     + + DE    ++    G  R A   L  + D AE+   
Sbjct: 173 --------QAMSDSSRGYGGQNIKLPDETRRMMSELVGGDARRALNSLEMMADMAEIDAN 224

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
                       +         ++ D  Y               + ISA     R +  D
Sbjct: 225 GVRVLTPDLLKEVSGERSARFDNKGDRYY---------------DLISAVHKSIRGSAPD 269

Query: 299 LIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
               +  +       P    R L+ IA + +G   P 
Sbjct: 270 AALYWYARIITAGGDPLYVARRLLAIASEDIGNADPR 306


>gi|315918924|ref|ZP_07915164.1| recombination factor protein RarA [Bacteroides sp. D2]
 gi|313692799|gb|EFS29634.1| recombination factor protein RarA [Bacteroides sp. D2]
          Length = 322

 Score =  152 bits (383), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 80/334 (23%), Positives = 128/334 (38%), Gaps = 61/334 (18%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP+TL+E+ GQ        +  +   A    +   +  GPPG+GKTTLAQ++A 
Sbjct: 3   PLAERLRPKTLDEYIGQKHLVGPGAILRKMIDA--GRISSFILWGPPGVGKTTLAQIIAN 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAM 129
           +L   F + S  V +   D+  ++   +          +LFIDEIHR S   ++ L  A+
Sbjct: 61  KLETPFYTLSA-VTSGVKDVREVIDRAKSNRFFSQSSPILFIDEIHRFSKSQQDSLLGAV 119

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E+  + L+    E PS   ++  LSR  L    +                      E ED
Sbjct: 120 ENGTVTLIGATTENPSFEVIRPLLSRCQLYVLKS---------------------LEKED 158

Query: 188 LKTIVQRG----AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           L+ ++QR     A L    +  +    +   S G  R    +L  V   +E      IT 
Sbjct: 159 LQELLQRAITTDAILKERKIELKETTAMLRFSGGDARKLLNILELVVQ-SETEETVVITD 217

Query: 244 EIADAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           E+    L +   A DK G    D+                   ISA +   R +  D   
Sbjct: 218 EMVTERLQQNPLAYDKDGEMHYDI-------------------ISAFIKSIRGSDPDGAI 258

Query: 302 PYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            ++ +       P    R L+  A + +G+  P+
Sbjct: 259 YWLARMVEGGEDPAFIARRLVISASEDIGLANPN 292


>gi|300871012|ref|YP_003785884.1| Holliday junction resolvase-like ATPase [Brachyspira pilosicoli
           95/1000]
 gi|300688712|gb|ADK31383.1| helicase subunit of the Holliday junction resolvase-like ATPase
           [Brachyspira pilosicoli 95/1000]
          Length = 433

 Score =  152 bits (383), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 72/342 (21%), Positives = 129/342 (37%), Gaps = 58/342 (16%)

Query: 11  NVSQED----ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           + ++ED         +RP ++EE  GQ    S  K   +      + +  ++F GPPG+G
Sbjct: 3   DFTEEDNSFLPMAERMRPTSIEEVYGQKHILSENKTLRKMIDK--DKITSMVFFGPPGVG 60

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSII 120
           K+T+A ++A++    +   +  V++   ++   +         E + +LFIDEIHR +  
Sbjct: 61  KSTVASIIAKKTKREYVKLNA-VLSNVSEIREAIKKAEKNLSNEKKTILFIDEIHRFNKS 119

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++ L PA+E+  + L+    + P                       LTN L  R  +  
Sbjct: 120 QQDALLPAVENGTIILIGSTTQNPYF--------------------YLTNALLSRIMLFE 159

Query: 179 RLNFYEIEDLKTIV-----QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
             N  + +  + +V     +RG     + V  +A   I   S G  R A   L       
Sbjct: 160 FKNLEDEDIREAVVNAIKDKRGLGEEDIDVEKKAIDLIVKFSHGDVRKALTYLETSYLAT 219

Query: 234 EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
           ++   K       D          + FD+ D  Y                TISA +   R
Sbjct: 220 QIDETKERLTITEDTVKDVTTKQALNFDE-DEHY---------------NTISAFIKSVR 263

Query: 294 DAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +  +    Y+ +       PR   R L  +A + +G+  P+
Sbjct: 264 GSDPNAAIYYLARMLESGEDPRYIARRLCILAAEDIGLADPN 305


>gi|312114760|ref|YP_004012356.1| ATPase AAA [Rhodomicrobium vannielii ATCC 17100]
 gi|311219889|gb|ADP71257.1| AAA ATPase central domain protein [Rhodomicrobium vannielii ATCC
           17100]
          Length = 455

 Score =  152 bits (383), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 72/338 (21%), Positives = 118/338 (34%), Gaps = 56/338 (16%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           S  V         LRP +L +  GQ             A    EA   ++F GPPG GKT
Sbjct: 24  SPAVLASRPLPDRLRPASLGDVIGQEHLLGEGGPLRRIA--DGEAPRSMIFWGPPGTGKT 81

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVE 122
           T+A+++A+  G +F   S  + +   DL  +    +DR       +LF+DEIHR +   +
Sbjct: 82  TVARLMAKGAGAHFEQISA-IFSGVADLRKVFDAAKDRQRFGQGTILFVDEIHRFNRSQQ 140

Query: 123 EILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +   P +ED  + L+    E PS       LSR                        +  
Sbjct: 141 DSFLPFVEDGTIILIGATTENPSFELNGALLSR---------------------AKVLVF 179

Query: 181 NFYEIEDLKTIVQRGAKLT--GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
                ++++ ++ R   +    L +T +A   +   + G  R A  L   V         
Sbjct: 180 RRLTDDNIEQLLARAESVLGKTLPLTPDARGALIGMADGDGRTALNLTEDVFATGRDPSH 239

Query: 239 KTITREIADAALLRL-AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
              T E+ +    R    DK      DL                   ISA     R +  
Sbjct: 240 PIDTAELTEIVQRRAPLYDKNRDGHYDL-------------------ISALHKAVRGSDP 280

Query: 298 DLIEPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
           D    +  +       P    R ++ +A + +G+  P+
Sbjct: 281 DAALYWFCRMIDGGEAPLYLARRMVRMAVEDIGLADPN 318


>gi|237740164|ref|ZP_04570645.1| ATPase [Fusobacterium sp. 2_1_31]
 gi|229422181|gb|EEO37228.1| ATPase [Fusobacterium sp. 2_1_31]
          Length = 407

 Score =  152 bits (383), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 69/339 (20%), Positives = 120/339 (35%), Gaps = 58/339 (17%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            L   N    +     LRP+ L++F GQ +      V          AL + +F GPPG 
Sbjct: 2   NLFQNNYKNVEPLAYKLRPKNLDDFVGQEKLLGKDGVIRRLIL--NSALSNSIFYGPPGC 59

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLS 118
           GK++L ++++  L  NF   +    A   D+  ++   +        R +LF+DEIHR +
Sbjct: 60  GKSSLGEIISNTLDCNFEKLNA-TTASVSDIRTVVETAKRNIELYNKRTILFLDEIHRFN 118

Query: 119 IIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
              ++ L    ED  L L+    E P        LSR                      +
Sbjct: 119 KNQQDALLSYTEDGTLTLIGATTENPYYNINNALLSRV---------------------M 157

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
                    ED+  ++ +G K   ++++ +    I   ++G  RIA   +    +     
Sbjct: 158 VFEFKALTNEDISKLIDKGLKFLNISMSGKIKEIIIDIAQGDSRIALNYVEMYNNI---- 213

Query: 237 HAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAI 296
           H++    EI      R        D+ D+                   ISA +   R + 
Sbjct: 214 HSQMTEDEIFSIFKERQVSFDKKQDKYDM-------------------ISAFIKSVRGSD 254

Query: 297 EDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            D    ++ +       P+   R L   A + +G+  P 
Sbjct: 255 PDAAVYWLARLLDGGEDPKYIARRLFIEASEDIGMANPE 293


>gi|301112162|ref|XP_002905160.1| ATPase WRNIP1 [Phytophthora infestans T30-4]
 gi|262095490|gb|EEY53542.1| ATPase WRNIP1 [Phytophthora infestans T30-4]
          Length = 499

 Score =  152 bits (383), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 73/337 (21%), Positives = 121/337 (35%), Gaps = 63/337 (18%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP  L +  GQ E      +     +A  + + +++  GPPG GKTTLA V+++
Sbjct: 85  PLAERMRPTDLNDLVGQEELLGPGSLLSTLIEA--DRVPNMILWGPPGCGKTTLAHVISK 142

Query: 77  ELGVNFRSTSGPVIAKAGDL-------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           + G  F S SG   +KAGD+                R ++F+DEIHR + I ++   P +
Sbjct: 143 KTGCKFISLSGAT-SKAGDMKDAVDRARGERKMFRRRTIVFVDEIHRFNKIQQDFFLPPV 201

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ED  + L+    E PS       LSR  + +                        +  E 
Sbjct: 202 EDGTITLIGATTENPSFEVNNALLSRCRVYSLKK---------------------HTPES 240

Query: 188 LKTIVQRGA---KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR- 243
           ++ I++R             DEA   +  +  G  R A   L      A +   K + R 
Sbjct: 241 IERILRRALTAGDQMSFEAEDEAIKYLTTQCAGDARAALNCLEMAIQTAPIDPDKRVLRV 300

Query: 244 -----EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
                +   A    L  D+      D+                   ISA     R + E+
Sbjct: 301 SAIHVQHCFAHRQTLFYDRNADMHYDV-------------------ISALHKSIRGSDEN 341

Query: 299 LIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
               ++ +       P    R L+ +A + +G+  P 
Sbjct: 342 ATLYWLARMLEGGENPLYVARRLIRVASEDVGLAAPE 378


>gi|113460956|ref|YP_719023.1| recombination factor protein RarA [Haemophilus somnus 129PT]
 gi|112822999|gb|ABI25088.1| Recombination protein MgsA [Haemophilus somnus 129PT]
          Length = 446

 Score =  152 bits (383), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 64/327 (19%), Positives = 120/327 (36%), Gaps = 43/327 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP+TL+++ GQ       K   +A +     +  ++F GPPG GKTTLA+++A+
Sbjct: 15  PLAAKMRPQTLKQYCGQEHLIGAGKPLYKAIENGH--IHSMIFWGPPGTGKTTLAEIIAQ 72

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAME 130
           ++       S  V A   ++   +   +         +LF+DE+HR +   ++   P +E
Sbjct: 73  QIHAQVERISA-VTAGVKEIRESIERAKQNRLMGQQTILFVDEVHRFNKTQQDAFLPHIE 131

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +  +  +    E PS       LSR  +         +  PL     + +      +++ 
Sbjct: 132 NGTIIFIGATTENPSFELNNALLSRVKV--------YILKPLTTSNIVTV------LQNA 177

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
               ++G     L   +     +A    G  R+A   L  + D A+      +       
Sbjct: 178 IQDAEQGLGKERLIFAENVLETLAEYVNGDARLALNCLELMVDMADETEKGKLINHHL-- 235

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  +  ++              AR    G    + ISA     R +  D    +  +  
Sbjct: 236 -LTEVLGERQ-------------ARFDKQGDRFYDLISALHKSIRGSAPDAALYWYARII 281

Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIPH 333
                P    R L+ IA + +G   P 
Sbjct: 282 TAGGDPLYVARRLLAIASEDVGNADPR 308


>gi|323215845|gb|EGA00585.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
          Length = 466

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 74/326 (22%), Positives = 111/326 (34%), Gaps = 40/326 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP  L ++ GQ    +  K    A +A    L  ++  GPPG GKTTLA+V+AR
Sbjct: 15  PLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIAR 72

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
               +    S        I +A + A    N   R +LF+DE+HR +   ++   P +ED
Sbjct: 73  YASADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED 132

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             +  +    E PS       LSR  +    +        + D                 
Sbjct: 133 GTITFIGATTENPSFELNSALLSRARVYLLKSLTTDDIEQVLD--------------QAM 178

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
               RG     + + DE    IA    G  R A   L  + D AE   +          A
Sbjct: 179 QDKTRGYGDQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEADDSGKRVL---WPA 235

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           LL     +              AR    G    + ISA     R +  D    +  +   
Sbjct: 236 LLTEIAGERS------------ARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIIT 283

Query: 310 IQRTPR--GRLLMPIAWQHLGIDIPH 333
               P    R  + IA + +G   P 
Sbjct: 284 AGGDPLYVARRCLAIASEDVGNADPR 309


>gi|34762825|ref|ZP_00143811.1| ATPase associated with chromosome architecture/replication
           [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
 gi|27887527|gb|EAA24611.1| ATPase associated with chromosome architecture/replication
           [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
          Length = 407

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 69/339 (20%), Positives = 120/339 (35%), Gaps = 58/339 (17%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            L  +N    +     LRP++LE+F GQ +      V           L + +F GPPG 
Sbjct: 2   NLFQKNYKNVEPLAYKLRPKSLEDFVGQEKLLGKDGVITRLIL--NSTLSNSIFYGPPGC 59

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLS 118
           GK++L ++++  L  NF   +    A   D+  ++            R +LF+DEIHR +
Sbjct: 60  GKSSLGEIISNTLDCNFEKLNA-TTASVSDIRNVVETARRNIELYNKRTILFLDEIHRFN 118

Query: 119 IIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
              ++ L    ED  L L+    E P        LSR                      +
Sbjct: 119 KNQQDALLSYTEDGTLTLIGATTENPYYNINNALLSRV---------------------M 157

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
                    ED+  ++ +G     ++++D+    I   S+G  RIA   +          
Sbjct: 158 VFEFKALTNEDILKLINKGLNFLNISMSDKIKEIIVDISQGDSRIALNYVEMY------- 210

Query: 237 HAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAI 296
                T+   D         ++ FD+   +Y               + ISA +   R + 
Sbjct: 211 -NNIHTQMSEDEIFSIFKERQVSFDKKQDKY---------------DMISAFIKSVRGSD 254

Query: 297 EDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            D    ++ +       P+   R L   A + +G+  P 
Sbjct: 255 PDAAVYWLARLLDGGEDPKYMARRLFIEASEDIGMANPE 293


>gi|312897412|ref|ZP_07756836.1| recombination factor protein RarA [Megasphaera micronuciformis
           F0359]
 gi|310621473|gb|EFQ05009.1| recombination factor protein RarA [Megasphaera micronuciformis
           F0359]
          Length = 443

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 69/345 (20%), Positives = 133/345 (38%), Gaps = 51/345 (14%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M+   L + + + +    + +RP+T+++  GQ       ++     +   + +  ++F G
Sbjct: 1   MEETSLFNTDTANQ-PLAARIRPKTIDDIIGQGHLLGEGRILRRFIE--NDTVPSMIFWG 57

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALL------TNLEDRDVLFIDEIH 115
           PPG+GKTTLA+V+A      F   S  V     ++  ++      T   ++ +LF+DEIH
Sbjct: 58  PPGVGKTTLARVIAGHTKAAFVDFSA-VTGGIKEIRQIMQKADENTRYGEKTILFVDEIH 116

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P +E   + L+    E PS       LSR        +V +L     D 
Sbjct: 117 RFNKAQQDAFLPFVEKGSIVLIGATTENPSFEINGALLSRC-------KVFVLHALTADD 169

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
               ++    E E        G     + + D+    IA+ + G  R A   L       
Sbjct: 170 IKELLKRALAEPE--------GFGTREIRIDDDLLGAIALFANGDGRSALSTLEMAVLNG 221

Query: 234 EVAHAK-TITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
           E+      +T++  +  + + +   DK G +  +L                   ISA   
Sbjct: 222 EIEGDALVVTKDSLEQCISKKSLLYDKKGEEHYNL-------------------ISALHK 262

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
             R++  D    ++ +       P    R ++  A + +G+  P 
Sbjct: 263 SMRNSDADASVYWLARMLEAGEDPLYVARRVVRFAAEDVGLADPR 307


>gi|296103102|ref|YP_003613248.1| recombination factor protein RarA [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295057561|gb|ADF62299.1| recombination factor protein RarA [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 447

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 74/326 (22%), Positives = 115/326 (35%), Gaps = 40/326 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP  L ++ GQ    +  K    A +A    L  ++  GPPG GKTTLA+V+AR
Sbjct: 15  PLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIAR 72

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
               +    S        I +A + A    N   R +LF+DE+HR +   ++   P +ED
Sbjct: 73  YANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED 132

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             +  +    E PS       LSR        RV LL +   +     +     +     
Sbjct: 133 GTIFFIGATTENPSFELNSALLSR-------ARVYLLKSLTTEDIENVLTQAMDDK---- 181

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
               RG     + + D+    IA    G  R A   L  + D AEV  A     +     
Sbjct: 182 ---ARGYGGQDIVLPDDTRRAIAELVNGDARRALNTLEMMADMAEVDDAGKRVLKPELLT 238

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
            +         ++ D  Y               + ISA     R +  D    +  +   
Sbjct: 239 EIAGERSARFDNKGDRFY---------------DLISALHKSVRGSAPDAALYWYARIIT 283

Query: 310 IQRTPR--GRLLMPIAWQHLGIDIPH 333
               P    R  + IA + +G   P 
Sbjct: 284 AGGDPLYVARRCLAIASEDVGNADPR 309


>gi|90424905|ref|YP_533275.1| recombination factor protein RarA [Rhodopseudomonas palustris
           BisB18]
 gi|90106919|gb|ABD88956.1| Recombination protein MgsA [Rhodopseudomonas palustris BisB18]
          Length = 442

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 76/344 (22%), Positives = 115/344 (33%), Gaps = 56/344 (16%)

Query: 4   REGLLSRNVSQEDADIS---LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
            + L +    + DA       LRPR LE+  GQ              + R   L  ++F 
Sbjct: 9   SDNLFAAAGMERDAPHPLPDRLRPRALEDVVGQDHILGPDGALTRMLETR--TLGSLVFW 66

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIH 115
           GPPG GKTT+A+++A    ++F   S        + K  D A          +LF+DE+H
Sbjct: 67  GPPGTGKTTVARLLADTTELHFEQISAVFSGVADLKKVFDAARARRQTGRGTLLFVDEVH 126

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P MED  + L+    E PS       LSR  ++   +        L   
Sbjct: 127 RFNKAQQDSFLPVMEDGTVVLVGATTENPSFELNAALLSRARVLVFHSLDAQAIEKL--- 183

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                  +   +E         AK   L     A       + G  R A  L   V   A
Sbjct: 184 -----YAHAETVE---------AKKLPLDAEARAVL--VRMADGDGRAALTLAEEVWRAA 227

Query: 234 EVAHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
                +    E     L R A   DK      +L                   ISA    
Sbjct: 228 RA--DEVFNAEQLQEILQRRAPIYDKSADGHYNL-------------------ISALHKS 266

Query: 292 PRDAIEDLIEPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
            R +  D    Y+ +       P    R ++ +A + +G+  P 
Sbjct: 267 VRGSDPDAALYYLCRMLDAGEDPLFLARRVVRMAVEDIGLADPQ 310


>gi|288801937|ref|ZP_06407378.1| ATPase, AAA family [Prevotella melaninogenica D18]
 gi|288335372|gb|EFC73806.1| ATPase, AAA family [Prevotella melaninogenica D18]
          Length = 418

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 76/331 (22%), Positives = 124/331 (37%), Gaps = 53/331 (16%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +     LRPRTL+++ GQ        V        +  +   +  GPPG+GKTTLAQ++A
Sbjct: 2   EPLAERLRPRTLDDYIGQEHLVGEGAVLRRMI--DSGRIASFILWGPPGVGKTTLAQIIA 59

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPA 128
             L   F + S  V +   D+  ++   +          +LFIDEIHR S   ++ L  A
Sbjct: 60  NRLETPFYTLSA-VTSGVKDVRDVIERAQSGRFFNSVSPILFIDEIHRFSKSQQDSLLGA 118

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           +E   + L+    E PS   ++  LSR  L    +        L  R             
Sbjct: 119 VEKGTVTLIGATTENPSFEVIRPLLSRCQLYTLKSLEKDDLLKLLHR------------- 165

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
            +   V+   K   + + +  A      S G  R    +L  +   AE  +   IT ++ 
Sbjct: 166 AITEDVE--LKKRNIELHETGAL--LRYSGGDARKLLNILDLII-SAESGNDVVITDKMV 220

Query: 247 DAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +  L     A DK G    D+                   ISA +   R +  D    +M
Sbjct: 221 EERLQENPLAYDKDGEMHYDI-------------------ISAFIKSIRGSDPDAALYWM 261

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +       P+   R ++  A + +G+  P+
Sbjct: 262 ARMIEGGEDPKFIARRVVISAAEDIGLANPN 292


>gi|325856575|ref|ZP_08172242.1| ATPase, AAA family [Prevotella denticola CRIS 18C-A]
 gi|325483423|gb|EGC86397.1| ATPase, AAA family [Prevotella denticola CRIS 18C-A]
          Length = 406

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 80/337 (23%), Positives = 131/337 (38%), Gaps = 65/337 (19%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +     +RPRTL+++ GQ        V        +  +   +  GPPG+GKTTLAQ++A
Sbjct: 2   EPLAERMRPRTLDDYIGQQHLVGEGAVLRRMI--DSGRIASFILWGPPGVGKTTLAQIIA 59

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPA 128
             L   F + S  V +   D+  ++   ++         +LFIDEIHR S   ++ L  A
Sbjct: 60  HRLETPFYTLSA-VTSGVKDVRDVIERAQNGRFFNSASPILFIDEIHRFSKSQQDSLLGA 118

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           +E   + L+    E PS   ++  LSR  L         +  PL             E +
Sbjct: 119 VEKGTVTLIGATTENPSFEVIRPLLSRCQL--------YVLKPL-------------EKD 157

Query: 187 DLKTIVQRG------AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           DL T++QR        K   + + +  A      S G  R    +L  + D A      T
Sbjct: 158 DLLTLLQRAVAEDTELKKRHIDLHETDAL--LRYSGGDARKLLNILELIVDAAP-DGTVT 214

Query: 241 ITREIADAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
           +T  I +  L +   A DK G    D+                   ISA +   R +  +
Sbjct: 215 VTDRIVEERLQQNPLAYDKDGEMHYDI-------------------ISAFIKSIRGSDPE 255

Query: 299 LIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
               +M +       P+   R ++  A + +G+  P+
Sbjct: 256 AALYWMARMIEGGEDPKFIARRVVISAAEDIGLANPN 292


>gi|227873104|ref|ZP_03991398.1| crossover junction endodeoxyribonuclease ATPase [Oribacterium sinus
           F0268]
 gi|227841085|gb|EEJ51421.1| crossover junction endodeoxyribonuclease ATPase [Oribacterium sinus
           F0268]
          Length = 421

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 73/344 (21%), Positives = 124/344 (36%), Gaps = 45/344 (13%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD     +    ++ A ++  +RPR+LEE  GQ       K+       R++ L  +LF 
Sbjct: 1   MDIFSYQAEKNKEKMAPLAARMRPRSLEEVVGQEHILGKDKLLSRLI--RSDQLHSLLFF 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDE 113
           GPPG GKT+LA+V+A     +F   +    A   D+   +   ++       + +LF+DE
Sbjct: 59  GPPGTGKTSLAKVIANSSKADFIPINA-TTAGKKDMEEAVARAKENMGGYGRKTILFVDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++ L P +E+  + L+    E P        LSR  L    +        L 
Sbjct: 118 IHRFNKAQQDYLLPHVEEGTIILIGATTENPYFEVNTALLSRSQLFELHSLKKEDIVKL- 176

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
                        ++       RG       + +EA   +A  + G  R+A   L     
Sbjct: 177 -------------LQTATQDKTRGMGNYNAVLEEEACDFLAEHAFGDARVALNALELAIL 223

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
               +    I       A           + +  + L      + G     +TISA +  
Sbjct: 224 STNPSATGEIRITKEVVA-----------ECMQEKLLR-----YDGESEHYDTISAFIKS 267

Query: 292 PRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            R +       Y+ +        R   R +M  A + +G   P 
Sbjct: 268 MRGSDPQAAVYYLSKMLQSGEDIRFIARRIMICASEDVGNADPQ 311


>gi|154509637|ref|ZP_02045279.1| hypothetical protein ACTODO_02170 [Actinomyces odontolyticus ATCC
           17982]
 gi|153799271|gb|EDN81691.1| hypothetical protein ACTODO_02170 [Actinomyces odontolyticus ATCC
           17982]
          Length = 563

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 70/347 (20%), Positives = 120/347 (34%), Gaps = 62/347 (17%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           +  L   +          +RP +L+E  GQ       K      +A  +    ++F GPP
Sbjct: 6   QHSLFEESGEDTRPLADRMRPTSLDEVVGQSHQIGPGKALRSMIEA--DRTPSMIFWGPP 63

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFIDEIHRL 117
           G+GKTTLA+V+AR    +F   S  V +   ++  ++        +  R ++F+DEIHR 
Sbjct: 64  GVGKTTLARVIARHTHASFIDFSA-VTSGIKEIREVMKQADAQASMGRRTIVFVDEIHRF 122

Query: 118 SIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
           +   ++   P +E   + L+    E PS       LSR                      
Sbjct: 123 NKAQQDAFLPFVEKGSIILIGATTENPSFEINNALLSRCK-------------------- 162

Query: 176 IPIRLNFYEIEDLKTIVQRGAKL------TGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
               L+    EDL  +++R  K         + + ++    IA  + G  R+A   L  V
Sbjct: 163 -VFVLHGLTEEDLVDLMRRALKDPRGFGGREVRIEEKLLRAIATFADGDARVALSTLEMV 221

Query: 230 RDFAEVAHAKTITREIADAAL---LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETIS 286
                     T         L     L  DK G +  ++                   IS
Sbjct: 222 VLNGVEDGGVTTVGPETVRQLTSTKSLRYDKDGEEHYNI-------------------IS 262

Query: 287 AGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
           A     R++  D    ++ +       P    R +   A + +G+  
Sbjct: 263 ALHKSMRNSDPDAAVYWLARMLEGGEDPLYVARRITRFASEDVGLAD 309


>gi|328792628|ref|XP_392908.4| PREDICTED: ATPase WRNIP1-like isoform 1 [Apis mellifera]
          Length = 528

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 68/346 (19%), Positives = 121/346 (34%), Gaps = 58/346 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP TL  + GQ+       +  +        + +++  GPPG GKT+LA V+A 
Sbjct: 104 PLAERMRPTTLLGYVGQLHILGPSTILYQLLNKFE--IPNIILWGPPGCGKTSLANVIAH 161

Query: 77  -----ELGVNFRSTSGPVIAKAGDLAALLT------NLEDRDVLFIDEIHRLSIIVEEIL 125
                  G          +A   ++  ++T          R V+F+DEIHR +   +++ 
Sbjct: 162 ICKTKSNGKIRYVKLSAAMAGVNEVKEIITIATNELKFNRRTVVFMDEIHRFNKNQQDVF 221

Query: 126 YPAMEDFQLDLM--VGEGPSARSVKINLSRFT-----LIAATTRVGLLTNPLQDRFGIPI 178
            P +E   + L+    E PS       LSR        +  +  + +L+  +    GI  
Sbjct: 222 LPHVESGIITLVGATTENPSFSLNSALLSRCRVIVLEKLNISNLICILSKAVISLEGIVH 281

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
             N         I +   ++    + +     +A  S G  RIA   L          + 
Sbjct: 282 NSN--------KISENITQVPKFIIDEPTIEWLAGTSDGDARIALGGLELAVQCKLPNNE 333

Query: 239 K-------TITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGL 289
                   TIT +    +L +     DK G    D+                   ISA  
Sbjct: 334 DFLKNGPVTITLDDIKESLKKTHMLYDKKGDQHYDM-------------------ISALH 374

Query: 290 SEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
              R + E+    ++ +       P    R L+ +A + +G++ P 
Sbjct: 375 KSVRASDENASLYWLTRMILGGEDPNYIARRLVRMACEDIGLEDPK 420


>gi|294784987|ref|ZP_06750275.1| ATPase, AAA family [Fusobacterium sp. 3_1_27]
 gi|294486701|gb|EFG34063.1| ATPase, AAA family [Fusobacterium sp. 3_1_27]
          Length = 407

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 69/339 (20%), Positives = 120/339 (35%), Gaps = 58/339 (17%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            L  +N    +     LRP++LE+F GQ +      V           L + +F GPPG 
Sbjct: 2   NLFQKNYKNVEPLAYKLRPKSLEDFVGQEKLLGKDGVITRLIL--NSTLSNSIFYGPPGC 59

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLS 118
           GK++L ++++  L  NF   +    A   D+  ++            R +LF+DEIHR +
Sbjct: 60  GKSSLGEIISNTLDCNFEKLNA-TTASVSDIRNVVETARRNIELYNKRTILFLDEIHRFN 118

Query: 119 IIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
              ++ L    ED  L L+    E P        LSR                      +
Sbjct: 119 KNQQDALLSYTEDGTLTLIGATTENPYYNINNALLSRV---------------------M 157

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
                    ED+  ++ +G     ++++D+    I   S+G  RIA   +          
Sbjct: 158 VFEFKALTNEDILKLINKGLNFLNISMSDKIKEIIVDISQGDSRIALNYIEMY------- 210

Query: 237 HAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAI 296
                T+   D         ++ FD+   +Y               + ISA +   R + 
Sbjct: 211 -NNIHTQMSEDEIFSIFKERQVSFDKKQDKY---------------DMISAFIKSVRGSD 254

Query: 297 EDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            D    ++ +       P+   R L   A + +G+  P 
Sbjct: 255 PDAAVYWLARLLDGGEDPKYMARRLFIEASEDIGMANPE 293


>gi|170717512|ref|YP_001784604.1| recombination factor protein RarA [Haemophilus somnus 2336]
 gi|168825641|gb|ACA31012.1| AAA ATPase central domain protein [Haemophilus somnus 2336]
          Length = 446

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 67/327 (20%), Positives = 122/327 (37%), Gaps = 43/327 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP+TL+++ GQ       K   +A +     +  ++F GPPG GKTTLA+++A+
Sbjct: 15  PLAAKMRPQTLKQYCGQEHLIGAGKPLYKAIENGH--IHSMIFWGPPGTGKTTLAEIIAQ 72

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAME 130
           ++       S  V A   ++   +   +         +LF+DE+HR +   ++   P +E
Sbjct: 73  QIHAQVERISA-VTAGVKEIRESIERAKQNRLMGQQTILFVDEVHRFNKTQQDAFLPHIE 131

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +  +  +    E PS       LSR  +         +  PL     + +      +++ 
Sbjct: 132 NGTIIFIGATTENPSFELNNALLSRVKV--------YILKPLTTSNIVTV------LQNA 177

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
               ++G     L   +     +A    G  R+A   L  + D A+      +       
Sbjct: 178 IQDAEQGLGKERLIFAENVLETLAEYVNGDARLALNCLELMVDMADETEKGKLINH---- 233

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
              RL  + +G  Q         AR    G    + ISA     R +  D    +  +  
Sbjct: 234 ---RLLTEVLGERQ---------ARFDKQGDRFYDLISALHKSIRGSAPDAALYWYARII 281

Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIPH 333
                P    R L+ IA + +G   P 
Sbjct: 282 TAGGDPLYVARRLLAIASEDVGNADPR 308


>gi|302038840|ref|YP_003799162.1| replication-associated recombination protein A [Candidatus
           Nitrospira defluvii]
 gi|300606904|emb|CBK43237.1| Replication-associated recombination protein A [Candidatus
           Nitrospira defluvii]
          Length = 429

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 77/338 (22%), Positives = 124/338 (36%), Gaps = 50/338 (14%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           +     +      +RPR+ ++  GQ E     +    A +   + L  V+F GPPG GKT
Sbjct: 16  TATRPGKVPLAERMRPRSFDDLVGQDEVVGPGRPLRNAIER--DQLSSVIFWGPPGCGKT 73

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVE 122
           TLA +VA+     F   S  V     +L  ++   E R        LF+DEIHR +   +
Sbjct: 74  TLAGLVAQHTESQFVPFSA-VTGGIPELREIIKAAEHRRAMGRATTLFVDEIHRFNKAQQ 132

Query: 123 EILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +   P +E   + L+    E PS   +   LSR  ++            + DR       
Sbjct: 133 DAFLPHVERGTVVLIGATTENPSFELIAPLLSRSIVVLLKPLSEESLGSILDR------- 185

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV--AHA 238
                        RG     + +   A   +     G  R     L  V   A V    +
Sbjct: 186 -------AVDDRARGLGSLRITLLPAARERLIAFGNGDARSLLTTLEFVAGQAPVGPDGS 238

Query: 239 KTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAI 296
           +TI  ++ +AALL+ A   DK G +  +L                   +SA +   RD+ 
Sbjct: 239 RTIDEQVLEAALLKKALRYDKSGEEHYNL-------------------VSAYIKSLRDSD 279

Query: 297 EDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
            D    ++ +       PR   R ++  A + +G   P
Sbjct: 280 PDGALYWLARMLEGGENPRFIARRMVIFASEDIGNADP 317


>gi|87122210|ref|ZP_01078093.1| putative ATPase [Marinomonas sp. MED121]
 gi|86162530|gb|EAQ63812.1| putative ATPase [Marinomonas sp. MED121]
          Length = 448

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 71/340 (20%), Positives = 116/340 (34%), Gaps = 44/340 (12%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           + L        +   + +RPR L ++ GQ       K      +         +  G PG
Sbjct: 2   QDLFESQWDLYEPLAARMRPRQLSDYLGQEHLVGEGKPLKRMIET--GRCHSFILWGAPG 59

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRL 117
           +GKTT A++++ +L  +F   S  V++   D+ A +   +        + VLF+DE+HR 
Sbjct: 60  VGKTTFAKLLSHQLQAHFLELSA-VMSGVKDIRAAVEQAKQHKMMNAGQTVLFVDEVHRF 118

Query: 118 SIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
           +   ++   P +ED     +    E P+       LSR        RV  L  P QD   
Sbjct: 119 NKSQQDAFLPFIEDGTFLFIGATTENPAFELNSALLSR-------ARVYSLKKPSQDIIR 171

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
             +     + E        G     + +       IA  + G  R +  LL  + D +  
Sbjct: 172 TGLERALNDSEH-------GYGKENIQIEARFIDAIAHAADGDVRRSLNLLEVLVDMSSQ 224

Query: 236 AHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDA 295
                   E     +  L      FD               GG    + ISA     R +
Sbjct: 225 EGDFQQVTEAQL--IDVLGQSYRAFD--------------KGGDAFYDQISAFHKSVRGS 268

Query: 296 IEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
             D    +M +       P    R L+ IA + +G   P 
Sbjct: 269 SADGALYWMARMLDGGCDPLYIARRLLAIASEDVGNADPR 308


>gi|327314193|ref|YP_004329630.1| recombination factor protein RarA [Prevotella denticola F0289]
 gi|326944810|gb|AEA20695.1| recombination factor protein RarA [Prevotella denticola F0289]
          Length = 406

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 77/337 (22%), Positives = 128/337 (37%), Gaps = 65/337 (19%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +     +RPRTL+++ GQ        V        +  +   +  GPPG+GKTTLAQ++A
Sbjct: 2   EPLAERMRPRTLDDYIGQQHLVGEGAVLRRMI--DSGRIASFILWGPPGVGKTTLAQIIA 59

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPA 128
             L   F + S  V +   D+  ++   ++         +LFIDEIHR S   ++ L  A
Sbjct: 60  HRLETPFYTLSA-VTSGVKDVRDVIERAQNGRFFNSASPILFIDEIHRFSKSQQDSLLGA 118

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           +E   + L+    E PS   ++  LSR  L    +                      E +
Sbjct: 119 VEKGTVTLIGATTENPSFEVIRPLLSRCQLYVLKS---------------------LEKD 157

Query: 187 DLKTIVQRG------AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           DL T++ R        K   + + +  A      S G  R    +L  + D A      T
Sbjct: 158 DLLTLLHRAVAEDTELKKRHIDLHETDAL--LRYSGGDARKLLNILELIVDAAP-DGTVT 214

Query: 241 ITREIADAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
           +T  I +  L +   A DK G    D+                   ISA +   R +  +
Sbjct: 215 VTDRIVEERLQQNPLAYDKDGEMHYDI-------------------ISAFIKSIRGSDPE 255

Query: 299 LIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
               +M +       P+   R ++  A + +G+  P+
Sbjct: 256 AALYWMARMIEGGEDPKFIARRVVISAAEDIGLANPN 292


>gi|294636938|ref|ZP_06715264.1| replication-associated recombination protein A [Edwardsiella tarda
           ATCC 23685]
 gi|291089856|gb|EFE22417.1| replication-associated recombination protein A [Edwardsiella tarda
           ATCC 23685]
          Length = 447

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 72/326 (22%), Positives = 119/326 (36%), Gaps = 40/326 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP+TLE++ GQ    +  K    A  A    L  ++  GPPG GKTTLA+++AR
Sbjct: 15  PLAARMRPQTLEQYIGQRHLLAAGKPLPRAILAGH--LHSMILWGPPGTGKTTLAELIAR 72

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
                    S        I +A + A    ++  R +LF+DE+HR +   ++   P +ED
Sbjct: 73  YGHAEVERISAVTSGIKEIREAIERARQNRDVGRRTILFVDEVHRFNKSQQDAFLPHIED 132

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             +  +    E PS       LSR  +         L   L+ +  + +      ++   
Sbjct: 133 GTITFIGATTENPSFELNSALLSRARV--------YLLKALEAQDIVQV------LQQAM 178

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
           +  +RG     L + +E    +A    G  R A   L  + D AEV         +    
Sbjct: 179 SDSERGYGGQDLLLPEETRDALAELVNGDARRALNTLEMMADMAEVDSQGQRRLTVDLLR 238

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
            +         +  D  Y               + ISA     R +  D    +  +   
Sbjct: 239 AVSGERSARFDNHGDRYY---------------DLISALHKSVRGSAPDAALYWYARIIT 283

Query: 310 IQRTPR--GRLLMPIAWQHLGIDIPH 333
               P    R L+ IA + +G   P 
Sbjct: 284 AGGDPLYVARRLLAIASEDVGNADPR 309


>gi|218961662|ref|YP_001741437.1| ATPase, AAA family [Candidatus Cloacamonas acidaminovorans]
 gi|167730319|emb|CAO81231.1| ATPase, AAA family [Candidatus Cloacamonas acidaminovorans]
          Length = 437

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 83/347 (23%), Positives = 129/347 (37%), Gaps = 64/347 (18%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHV 57
           + DRE L ++ V         LRP+TLEE  GQ +     S L+  IE+ +         
Sbjct: 9   LFDREELSTKTV----PLAEKLRPQTLEELLGQTKLIAENSPLRQMIESGE-----YHSF 59

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLF 110
           +  GPPG GKTT+A+++ +  G NF   S  V+A   D+ A++   +        R +LF
Sbjct: 60  ILWGPPGSGKTTIARIIEKNSGYNFIRFSA-VLASISDVKAVMKEADYLHRTQNKRSILF 118

Query: 111 IDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           IDEIHR +   ++   P +E   + L+    E PS   +   LSR T             
Sbjct: 119 IDEIHRFNKSQQDAFLPYVESGAIILIGATTENPSFEVIPALLSRCT------------- 165

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
                      L      DLK I++RG     L   +E    +A  + G  R     L  
Sbjct: 166 --------VFVLEALSENDLKIILKRGFAELKLEEDEEIINWMAQNAGGDARRVLNDLEL 217

Query: 229 VRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAG 288
           V  + +              A   +  DK   +  +L                   ISA 
Sbjct: 218 VLPYLQKKPHPKTEELAKFLAKKTMFYDKNREEHYNL-------------------ISAL 258

Query: 289 LSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
               R +       ++ +       PR   R L+  A + +G+  P+
Sbjct: 259 HKSLRGSDPQAGLYWLARMLEAGEDPRYIVRRLIRFASEDVGLADPN 305


>gi|167550366|ref|ZP_02344123.1| AAA ATPase, central domain protein [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205324653|gb|EDZ12492.1| AAA ATPase, central domain protein [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
          Length = 447

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 74/326 (22%), Positives = 111/326 (34%), Gaps = 40/326 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP  L ++ GQ    +  K    A +A    L  ++  GPPG GKTTLA+V+AR
Sbjct: 15  PLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIAR 72

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
               +    S        I +A + A    N   R +LF+DE+HR +   ++   P +ED
Sbjct: 73  YASADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED 132

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             +  +    E PS       LSR  +    +        + D                 
Sbjct: 133 GTITFIGATTENPSFELNSALLSRARVYLLKSLTTDDIEQVLD--------------QAM 178

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
               RG     + + DE    IA    G  R A   L  + D AE   +          A
Sbjct: 179 QDKTRGYGDQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEADDSGKRVL---LPA 235

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           LL     +              AR    G    + ISA     R +  D    +  +   
Sbjct: 236 LLTEIAGERS------------ARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIIT 283

Query: 310 IQRTPR--GRLLMPIAWQHLGIDIPH 333
               P    R  + IA + +G   P 
Sbjct: 284 AGGDPLYVARRCLAIASEDVGNADPR 309


>gi|218262943|ref|ZP_03477241.1| hypothetical protein PRABACTJOHN_02921 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223042|gb|EEC95692.1| hypothetical protein PRABACTJOHN_02921 [Parabacteroides johnsonii
           DSM 18315]
          Length = 424

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 72/330 (21%), Positives = 118/330 (35%), Gaps = 52/330 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP+TL+++ GQ        V  +   A    +   +  GPPG+GKTTLAQ+++ 
Sbjct: 5   PLAERLRPKTLDDYIGQKHLVGPGAVLRKMIDA--GRVPSFILWGPPGVGKTTLAQIISN 62

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAM 129
           +L   F + S  + +   D+  ++   +          +LFIDEIHR S   ++ L  A+
Sbjct: 63  KLEAPFYTLSA-ISSGVKDVREVIEKAKGNRFFNTVSPILFIDEIHRFSKSQQDSLLNAV 121

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E   + L+    E PS   ++  LSR  +    +        L ++              
Sbjct: 122 ETGVVTLIGATTENPSFEVIRPLLSRCQVYVLKSLEKADLLTLLNK------------AV 169

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            + IV +   +                S G  R    +L  V    E      IT E   
Sbjct: 170 TEDIVLKDMNIVLTETDAML-----RYSGGDARKLLNILELVVAAEEGNEKIEITDEKVV 224

Query: 248 AALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
             L     A DK G    D+                   ISA +   R +  D    ++ 
Sbjct: 225 ERLQENPAAYDKGGEMHYDI-------------------ISAFIKSIRGSDPDAAIYWLA 265

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +       P    R L+  A + +G+  P+
Sbjct: 266 RMVAGGEDPEFIARRLVISASEDIGLANPN 295


>gi|300926530|ref|ZP_07142319.1| replication-associated recombination protein A [Escherichia coli MS
           182-1]
 gi|301325785|ref|ZP_07219233.1| replication-associated recombination protein A [Escherichia coli MS
           78-1]
 gi|300417447|gb|EFK00758.1| replication-associated recombination protein A [Escherichia coli MS
           182-1]
 gi|300847428|gb|EFK75188.1| replication-associated recombination protein A [Escherichia coli MS
           78-1]
 gi|323175486|gb|EFZ61081.1| magnesium chelatase, subunit ChlI family protein [Escherichia coli
           1180]
          Length = 428

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 73/326 (22%), Positives = 115/326 (35%), Gaps = 50/326 (15%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  L ++ GQ    +  K    A +A    L  ++  GPPG GKTTLA+V+AR    +
Sbjct: 1   MRPENLAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIARYANAD 58

Query: 82  FRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
               S        I +A + A    N   R +LF+DE+HR +   ++   P +ED  +  
Sbjct: 59  VERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 118

Query: 137 M--VGEGPSARSVKINLSRFTLIAATT-----RVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           +    E PS       LSR  +    +        +LT  ++D+                
Sbjct: 119 IGATTENPSFELNSALLSRARVYLLKSLGTEDIEQVLTQAMEDK---------------- 162

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
               RG     + + DE    IA    G  R A   L  + D AEV  +     +     
Sbjct: 163 ---TRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVNDSGKRVLKPELLT 219

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
            +         ++ D  Y               + ISA     R +  D    +  +   
Sbjct: 220 EIAGERSARFDNKGDRFY---------------DLISALHKSVRGSAPDAALYWYARIIT 264

Query: 310 IQRTPR--GRLLMPIAWQHLGIDIPH 333
               P    R  + IA + +G   P 
Sbjct: 265 AGGDPLYVARRCLAIASEDVGNADPR 290


>gi|300817006|ref|ZP_07097225.1| replication-associated recombination protein A [Escherichia coli MS
           107-1]
 gi|301022877|ref|ZP_07186710.1| replication-associated recombination protein A [Escherichia coli MS
           69-1]
 gi|309795299|ref|ZP_07689717.1| replication-associated recombination protein A [Escherichia coli MS
           145-7]
 gi|300397339|gb|EFJ80877.1| replication-associated recombination protein A [Escherichia coli MS
           69-1]
 gi|300530358|gb|EFK51420.1| replication-associated recombination protein A [Escherichia coli MS
           107-1]
 gi|308120949|gb|EFO58211.1| replication-associated recombination protein A [Escherichia coli MS
           145-7]
 gi|332091064|gb|EGI96154.1| ATPase family associated with various cellular activities family
           protein [Shigella dysenteriae 155-74]
          Length = 428

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 73/326 (22%), Positives = 115/326 (35%), Gaps = 50/326 (15%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  L ++ GQ    +  K    A +A    L  ++  GPPG GKTTLA+V+AR    +
Sbjct: 1   MRPENLAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIARYANAD 58

Query: 82  FRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
               S        I +A + A    N   R +LF+DE+HR +   ++   P +ED  +  
Sbjct: 59  VERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 118

Query: 137 M--VGEGPSARSVKINLSRFTLIAATT-----RVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           +    E PS       LSR  +    +        +LT  ++D+                
Sbjct: 119 IGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDK---------------- 162

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
               RG     + + DE    IA    G  R A   L  + D AEV  +     +     
Sbjct: 163 ---TRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVNDSGKRVLKPELLT 219

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
            +         ++ D  Y               + ISA     R +  D    +  +   
Sbjct: 220 EIAGERSARFDNKGDRFY---------------DLISALHKSVRGSAPDAALYWYARIIT 264

Query: 310 IQRTPR--GRLLMPIAWQHLGIDIPH 333
               P    R  + IA + +G   P 
Sbjct: 265 AGGDPLYVARRCLAIASEDVGNADPR 290


>gi|228948113|ref|ZP_04110397.1| hypothetical protein bthur0007_42390 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228811471|gb|EEM57808.1| hypothetical protein bthur0007_42390 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 476

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 80/340 (23%), Positives = 130/340 (38%), Gaps = 43/340 (12%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           ++R+  L   V  +      +RP  ++E  GQ       K+     +A       ++  G
Sbjct: 37  IERDYTLRETVKMKQPLAHRMRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYG 94

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSI 119
           PPG GKT++A  +A   G  FR  +  V     D+  ++   +     VL +DE+HRL  
Sbjct: 95  PPGTGKTSIASAIAGSTGTPFRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDK 153

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             ++ L P +E   L L+      P         SR        ++  L    +D   I 
Sbjct: 154 AKQDFLLPHLESGLLTLIGATTSNPFHAINSAIRSRC-------QIFELHALTEDDLLIG 206

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR--DFAEV 235
           ++    + E       +G     + VT EA    A  S G  R A   L       F   
Sbjct: 207 LKRALEDKE-------KGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTD 259

Query: 236 AHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
             A  IT EIA+  L + +   DK G    D+  L+   ++  G  V             
Sbjct: 260 DKAAEITLEIAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDV------------N 305

Query: 294 DAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            A+  L    +I+ G +Q    GR L+ +A++ +G+  P 
Sbjct: 306 AALHYLAR--LIEAGDLQSI--GRRLLIMAYEDIGLASPQ 341


>gi|37525550|ref|NP_928894.1| recombination factor protein RarA [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36784978|emb|CAE13896.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 447

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 73/337 (21%), Positives = 119/337 (35%), Gaps = 42/337 (12%)

Query: 8   LSRNVSQED--ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           LS + SQ +     + +RP TLE++ GQ    +  K    A   RA  L  ++  GPPG 
Sbjct: 4   LSLDFSQNEFRPLAARMRPMTLEQYIGQRHLLAEGKPLPRAI--RAGQLHSMILWGPPGT 61

Query: 66  GKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GKTTLA+++      +    S        I ++ + A    N   R +LF+DE+HR +  
Sbjct: 62  GKTTLAEIIGHYAQADVERISAVTSGIKEIRESIEKARQNRNAGRRTILFVDEVHRFNKS 121

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++   P +ED  +  +    E PS       LSR  +    +        +        
Sbjct: 122 QQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLTTEEIEQV-------- 173

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
                 +E   +  +RG     + + +     IA    G  R +  LL  + D AE    
Sbjct: 174 ------LEQAMSDKERGYHGQNIVLPENTRHMIAELVAGDARRSLNLLEMMADMAETNAQ 227

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
                  A    +         ++ D  Y               + ISA     R +  D
Sbjct: 228 GQRVLTPALLKEVSGERSARFDNKGDRYY---------------DLISALHKSVRGSAPD 272

Query: 299 LIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
               +  +       P    R L+ IA + +G   P 
Sbjct: 273 AALYWYARIITAGGDPLYVARRLLAIASEDVGNADPR 309


>gi|260597296|ref|YP_003209867.1| recombination factor protein RarA [Cronobacter turicensis z3032]
 gi|260216473|emb|CBA29618.1| Replication-associated recombination protein A [Cronobacter
           turicensis z3032]
          Length = 447

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 74/340 (21%), Positives = 116/340 (34%), Gaps = 52/340 (15%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
            S N  Q     + +RP  L ++ GQ    +  K    A +A    L  ++  GPPG GK
Sbjct: 8   FSENTFQ--PLAARMRPENLAQYIGQQHLLAPGKPLPRAIEAGH--LHSMILWGPPGTGK 63

Query: 68  TTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           TTLA+V+ R    +    S        I +A + A    N   R +LF+DE+HR +   +
Sbjct: 64  TTLAEVIGRYANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQ 123

Query: 123 EILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATT-----RVGLLTNPLQDRFG 175
           +   P +ED  +  +    E PS       LSR  +    +        +LT  + DR  
Sbjct: 124 DAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLTVEDIEQVLTQAMNDR-- 181

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
                            +RG     + + DE    IA    G  R A   L  + D A  
Sbjct: 182 -----------------ERGYGGQDIVLPDETRLAIAELVNGDARRALNTLEMMADMAPT 224

Query: 236 AHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDA 295
             +     +      +         ++ D  Y               + ISA     R +
Sbjct: 225 DDSGKRVLKPELLTEIAGERSARFDNKGDRFY---------------DLISALHKSVRGS 269

Query: 296 IEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
             D    +  +       P    R  + IA + +G   P 
Sbjct: 270 APDAALYWYARIISAGGDPLYVARRCLAIASEDVGNADPR 309


>gi|204930075|ref|ZP_03221096.1| AAA ATPase, central domain protein [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|204321069|gb|EDZ06270.1| AAA ATPase, central domain protein [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
          Length = 447

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 74/326 (22%), Positives = 114/326 (34%), Gaps = 40/326 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP  L ++ GQ    +  K    A +A    L  ++  GPPG GKTTLA+V+AR
Sbjct: 15  PLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIAR 72

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
               +    S        I +A + A    N   R +LF+DE+HR +   ++   P +ED
Sbjct: 73  YASADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED 132

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             +  +    E PS       LSR        RV LL +   D     +       +   
Sbjct: 133 GTITFIGATTENPSFELNSALLSR-------ARVYLLNSLTTDDIEQVL-------DQAM 178

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
               RG     + + DE    IA    G  R A   L  + D AE   +       +   
Sbjct: 179 QDKTRGYGDQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEADDSGKRVLLPSLLT 238

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
            +         ++ D  Y               + ISA     R +  D    +  +   
Sbjct: 239 EIAGERSARFDNKGDRFY---------------DLISALHKSVRGSAPDAALYWYARIIT 283

Query: 310 IQRTPR--GRLLMPIAWQHLGIDIPH 333
               P    R  + IA + +G   P 
Sbjct: 284 AGGDPLYVARRCLAIASEDVGNADPR 309


>gi|16759833|ref|NP_455450.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|16764323|ref|NP_459938.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|29142394|ref|NP_805736.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|56413986|ref|YP_151061.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|161614808|ref|YP_001588773.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167994703|ref|ZP_02575794.1| ATPase, AAA family [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168230855|ref|ZP_02655913.1| putative DNA recombination-associated ATPase RarA [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|168240812|ref|ZP_02665744.1| ATPase, AAA family [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|168263552|ref|ZP_02685525.1| ATPase, AAA family [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|168466546|ref|ZP_02700408.1| putative DNA recombination-associated ATPase RarA [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|168822938|ref|ZP_02834938.1| putative DNA recombination-associated ATPase RarA [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|194446297|ref|YP_002040161.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194447715|ref|YP_002044955.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194471144|ref|ZP_03077128.1| putative DNA recombination-associated ATPase RarA [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|197263317|ref|ZP_03163391.1| ATPase, AAA family [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197362909|ref|YP_002142546.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|200391027|ref|ZP_03217638.1| ATPase, AAA family [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|213428592|ref|ZP_03361342.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213851471|ref|ZP_03381369.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|238913263|ref|ZP_04657100.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|289830103|ref|ZP_06547534.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|25329900|pir||AH0611 conserevd hypothetical protein STY0960 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16419474|gb|AAL19897.1| putative polynucleotide enzyme [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|16502126|emb|CAD05362.1| conserevd hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29138024|gb|AAO69585.1| conserevd hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56128243|gb|AAV77749.1| conserevd hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|161364172|gb|ABX67940.1| hypothetical protein SPAB_02560 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194404960|gb|ACF65182.1| putative DNA recombination-associated ATPase RarA [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194406019|gb|ACF66238.1| ATPase, AAA family [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194457508|gb|EDX46347.1| putative DNA recombination-associated ATPase RarA [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|195630930|gb|EDX49516.1| putative DNA recombination-associated ATPase RarA [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|197094386|emb|CAR59901.1| conserevd hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197241572|gb|EDY24192.1| ATPase, AAA family [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|199603472|gb|EDZ02018.1| ATPase, AAA family [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|205327462|gb|EDZ14226.1| ATPase, AAA family [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205334719|gb|EDZ21483.1| putative DNA recombination-associated ATPase RarA [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|205339853|gb|EDZ26617.1| ATPase, AAA family [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|205340727|gb|EDZ27491.1| putative DNA recombination-associated ATPase RarA [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|205347729|gb|EDZ34360.1| ATPase, AAA family [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|261246179|emb|CBG23983.1| conserevd hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267992695|gb|ACY87580.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301157506|emb|CBW16996.1| conserevd hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312911950|dbj|BAJ35924.1| recombination protein RarA [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|320085199|emb|CBY94985.1| ATPase WRNIP1 Werner helicase-interacting protein 1 [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
 gi|321223286|gb|EFX48355.1| ATPase, AAA family [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|323129228|gb|ADX16658.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332987854|gb|AEF06837.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 447

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 74/326 (22%), Positives = 111/326 (34%), Gaps = 40/326 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP  L ++ GQ    +  K    A +A    L  ++  GPPG GKTTLA+V+AR
Sbjct: 15  PLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIAR 72

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
               +    S        I +A + A    N   R +LF+DE+HR +   ++   P +ED
Sbjct: 73  YASADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED 132

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             +  +    E PS       LSR  +    +        + D                 
Sbjct: 133 GTITFIGATTENPSFELNSALLSRARVYLLKSLTTDDIEQVLD--------------QAM 178

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
               RG     + + DE    IA    G  R A   L  + D AE   +          A
Sbjct: 179 QDKTRGYGDQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEADDSGKRVL---LPA 235

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           LL     +              AR    G    + ISA     R +  D    +  +   
Sbjct: 236 LLTEIAGERS------------ARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIIT 283

Query: 310 IQRTPR--GRLLMPIAWQHLGIDIPH 333
               P    R  + IA + +G   P 
Sbjct: 284 AGGDPLYVARRCLAIASEDVGNADPR 309


>gi|116748300|ref|YP_844987.1| recombination factor protein RarA [Syntrophobacter fumaroxidans
           MPOB]
 gi|116697364|gb|ABK16552.1| Recombination protein MgsA [Syntrophobacter fumaroxidans MPOB]
          Length = 451

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 78/346 (22%), Positives = 133/346 (38%), Gaps = 47/346 (13%)

Query: 2   MDREGLL---SRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M +  L    S +  +E+A +   +RP +L+EF GQ       K+     ++R       
Sbjct: 1   MQQMNLFLGRSSHPVRENAPLAERMRPGSLDEFVGQDHLLGRGKILDRVIRSR--RFQSF 58

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLF 110
           +  GPPG GKTTLA ++A +   +    S  V+A   ++   +T  +        R  LF
Sbjct: 59  VLWGPPGSGKTTLAAIIAAQTQTHMIHLSA-VMAGTREIREAVTEAKQVWAKQKLRTWLF 117

Query: 111 IDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +DEIHRL+   ++ L P +E+  L L+    E PS   ++  LSR        RV +L +
Sbjct: 118 MDEIHRLNKAQQDTLLPHIENGTLLLLGATTENPSFEIIRPLLSR-------ARVLVLNH 170

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
                 G  +     + +       RG       +T++A   +   + G  RIA   L  
Sbjct: 171 LSDAELGNIVHRALEDRD-------RGLGNFPSRLTEDAEAFLLSAAGGDARIALNALEV 223

Query: 229 VRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAG 288
                      T   +  +  L+ L   +    +  + Y         GG      ISA 
Sbjct: 224 AVL--------TTPPDPQNIRLVDLNAVQEALQRKAVHY-------DKGGEEHFNLISAL 268

Query: 289 LSEPRDAIEDLIEPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIP 332
               R +  D    ++ +       P    R  + +A + +G+  P
Sbjct: 269 HKSVRGSDPDAALYWLARMLDAGEEPLYLARRAIRMASEDIGLADP 314


>gi|160871530|ref|ZP_02061662.1| DNA-dependant ATPase [Rickettsiella grylli]
 gi|159120329|gb|EDP45667.1| DNA-dependant ATPase [Rickettsiella grylli]
          Length = 434

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 72/329 (21%), Positives = 117/329 (35%), Gaps = 49/329 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + LRP+ L++F GQ       K    A       L  ++  GPPG GKTTLAQ++A 
Sbjct: 10  PLAARLRPQHLDQFFGQAHLLGPQKPLRRALL--NNQLHSMILWGPPGTGKTTLAQLMAH 67

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE--------DRDVLFIDEIHRLSIIVEEILYPA 128
            +   F S S  + +   ++  L   ++         + + F+DEIHR +   ++ L P 
Sbjct: 68  HIQAKFESLSA-LQSGVKEIRQLADRIKSQMNTHQPQKTICFVDEIHRFNKSQQDSLLPF 126

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           +E     L+    E PS       LSR       TRV +L         + +      I+
Sbjct: 127 VESGLFILIGATTENPSFEINNALLSR-------TRVYVLKK-------LSVNDIMKIID 172

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
                   G     L +      ++A  + G  R A  LL    + AE            
Sbjct: 173 RALNDQVNGLGRQQLMMETSIKKQLAHMADGDARQALNLLEIAAEIAENN---------- 222

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
                   ID+    ++     T + R    G    + ISA     R    D    ++ +
Sbjct: 223 -------IIDQNSLKKMTQ---TSLRRFDKNGEFFYDQISALHKSVRGTDPDAALYWLAR 272

Query: 307 QGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                  P    R ++ +A + +G   P 
Sbjct: 273 MLDGGCDPLYIARRIVRMASEDIGNADPR 301


>gi|15965138|ref|NP_385491.1| recombination factor protein RarA [Sinorhizobium meliloti 1021]
 gi|15074318|emb|CAC45964.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021]
          Length = 436

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 76/336 (22%), Positives = 120/336 (35%), Gaps = 55/336 (16%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
             ++        LRPRTL E TGQ        V        + +L  ++F GPPG GKTT
Sbjct: 11  PEIASARPLADRLRPRTLAEVTGQEHLTGPDGVLTRMI--ASGSLGSMIFWGPPGTGKTT 68

Query: 70  LAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           +A++++ E G+ F   S        + K  + A        + +LF+DEIHR +   ++ 
Sbjct: 69  VARLLSGEAGLAFEQISAIFSGVADLKKVFESARARRMSGRQTLLFVDEIHRFNRAQQDS 128

Query: 125 LYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             P MED  + L+    E PS       LSR                        +    
Sbjct: 129 FLPVMEDGTVILVGATTENPSFELNAALLSR---------------------ARVLTFKP 167

Query: 183 YEIEDLKTIVQR--GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           ++   L+ +++R   A+   L + DEA   +   + G  R    L   V   A       
Sbjct: 168 HDEASLEELLKRAEAAEGKPLPLDDEARASLIRMADGDGRAVLTLAEEVWRAAR------ 221

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVG-IETISAGLSEPRDAIEDL 299
                          D  G  +     +   A  +  G  G    ISA     R +  D 
Sbjct: 222 ----------REEIFDSAGLQE----IVQRRAPVYDKGQDGHYNLISALHKSVRGSDPDA 267

Query: 300 IEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
              Y+ +       P   GR L+ +A + +G+  P 
Sbjct: 268 ALYYLCRMFDAGEDPLYIGRRLVRMAVEDIGLADPQ 303


>gi|323484771|ref|ZP_08090128.1| hypothetical protein HMPREF9474_01879 [Clostridium symbiosum
           WAL-14163]
 gi|323401877|gb|EGA94218.1| hypothetical protein HMPREF9474_01879 [Clostridium symbiosum
           WAL-14163]
          Length = 444

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 79/351 (22%), Positives = 132/351 (37%), Gaps = 60/351 (17%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MMD+  L   N        S +RP TL+ F GQ       KV     +   + +  ++F 
Sbjct: 1   MMDQLSLFD-NRETTSPLASRIRPDTLDGFVGQKHLIGEGKVLRNLIEK--DQVTSMIFW 57

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEI 114
           GPPG+GKTTLA+++A +   +F   S  V +   ++  ++   E       R +LF+DEI
Sbjct: 58  GPPGVGKTTLARIIAGKTRSSFIDFSA-VTSGIKEIKTVMEQAEKNRSMGIRTILFVDEI 116

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++   P +E   + L+    E PS       LSR  +                
Sbjct: 117 HRFNKAQQDAFLPYVEKGSIILIGATTENPSFEINSALLSRCKV---------------- 160

Query: 173 RFGIPIRLNFYEIEDLKTIVQ--RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
            F +         E L  +V+  +G     + ++ E    IA  + G  R A   L    
Sbjct: 161 -FVLKALTAEELAELLAAVVKSPKGFGNQHVQISKEQLFFIANFANGDARTALNTLEMAV 219

Query: 231 DFAEVAHAKTITREIADAALLRLA------IDKMGFDQLDLRYLTMIARNFGGGPVGIET 284
              E+  + T++  + +  L +         DK G +  +L                   
Sbjct: 220 LNGELDRSGTLS--VTNQVLEQCTNKKSLLYDKKGEEHYNL------------------- 258

Query: 285 ISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           ISA     R++  D    ++ +       P    R L+  A + +GI  P 
Sbjct: 259 ISALHKSMRNSDPDAAVYWLARMLEAGEDPLYVARRLIRFASEDIGIADPQ 309


>gi|238757607|ref|ZP_04618791.1| Replication-associated recombination protein A [Yersinia aldovae
           ATCC 35236]
 gi|238704112|gb|EEP96645.1| Replication-associated recombination protein A [Yersinia aldovae
           ATCC 35236]
          Length = 444

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 70/337 (20%), Positives = 116/337 (34%), Gaps = 42/337 (12%)

Query: 8   LSRNVSQED--ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           +S + SQ +     + +RP TL+++ GQ    +  K    A  A    L  ++  GPPG 
Sbjct: 1   MSLDFSQNEFQPLAARMRPLTLDQYIGQQHLLAPGKPLPRAIIAGQ--LHSMILWGPPGT 58

Query: 66  GKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GKTTLA+++ R    +    S        I +A + A    +   R +LF+DE+HR +  
Sbjct: 59  GKTTLAEIIGRYGQADVERISAVTSGIKEIREAIERARQNRDAGRRTILFVDEVHRFNKS 118

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++   P +ED  +  +    E PS       LSR  +             + D      
Sbjct: 119 QQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKALTAEDIEKVID------ 172

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
                      +   RG     + + DE    ++    G  R A   L  + D AE+   
Sbjct: 173 --------QAMSDSSRGYGGQNIKLPDETRRMMSELVGGDARRALNSLEMMADMAEIDAK 224

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
                       +         ++ D  Y               + ISA     R +  D
Sbjct: 225 GVRILTPDLLKEVSGERSARFDNKGDRYY---------------DLISAVHKSIRGSAPD 269

Query: 299 LIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
               +  +       P    R L+ IA + +G   P 
Sbjct: 270 AALYWYARIITAGGDPLYVARRLLAIASEDVGNADPR 306


>gi|241204199|ref|YP_002975295.1| recombination factor protein RarA [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240858089|gb|ACS55756.1| AAA ATPase central domain protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 438

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 79/336 (23%), Positives = 127/336 (37%), Gaps = 51/336 (15%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           +   V+        LRP+TL + TGQ        V     +  + +L  ++F GPPG GK
Sbjct: 10  VPEEVAARRPLADRLRPKTLADVTGQEHLTGEDGVLKRMIE--SGSLGSMIFWGPPGTGK 67

Query: 68  TTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           TT+A++++ E G+ F   S        + K  + A L      + +LF+DEIHR +   +
Sbjct: 68  TTVARLLSGEAGLAFEQISAIFSGVADLKKVFETARLRRMDGRQTLLFVDEIHRFNRAQQ 127

Query: 123 EILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +   P MED  + L+    E PS       LSR  ++   +                   
Sbjct: 128 DSFLPVMEDGTVILVGATTENPSFELNAALLSRARVLTFKS------------------- 168

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
             ++ E L+ +++R      +        E A  S    R+A    R V   AE      
Sbjct: 169 --HDEESLEELLKRA---ETIEQKPLPLTEDARVSLI--RMADGDGRAVLTLAE------ 215

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVG-IETISAGLSEPRDAIEDL 299
              E+  AA    + D  G      R +   A  +     G    ISA     R +  D 
Sbjct: 216 ---EVWRAAREGESFDTEGLT----RIVQRRAPVYDKAQDGHYNLISALHKSVRGSDPDA 268

Query: 300 IEPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
              Y+ +       P   GR L+ +A + +G+  P 
Sbjct: 269 ALYYLARMFDAGEDPLYLGRRLVRMAVEDIGLADPQ 304


>gi|154495040|ref|ZP_02034045.1| hypothetical protein PARMER_04086 [Parabacteroides merdae ATCC
           43184]
 gi|154085590|gb|EDN84635.1| hypothetical protein PARMER_04086 [Parabacteroides merdae ATCC
           43184]
          Length = 426

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 73/330 (22%), Positives = 117/330 (35%), Gaps = 52/330 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP+TL+++ GQ        V  +   A    +   +  GPPG+GKTTLAQ+++ 
Sbjct: 5   PLAERLRPKTLDDYIGQKHLVGPGAVLRKMIDA--GRVPSFILWGPPGVGKTTLAQIISN 62

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAM 129
           +L   F + S  + +   D+  ++   +          +LFIDEIHR S   ++ L  A+
Sbjct: 63  KLEAPFYTLSA-ISSGVKDVREVIEKAKGNRFFNTVSPILFIDEIHRFSKSQQDSLLNAV 121

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E   + L+    E PS   ++  LSR  +    +        L                 
Sbjct: 122 ETGVVTLIGATTENPSFEVIRPLLSRCQVYVLKSLEKADLLTL----------------- 164

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           L   V     L  + +       +   S G  R    +L  V    E      IT E   
Sbjct: 165 LNKAVTEDIILKDMNIVLAETDAMLRYSGGDARKLLNILELVVAAEEGNEKIEITDEKVV 224

Query: 248 AALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
             L     A DK G    D+                   ISA +   R +  D    ++ 
Sbjct: 225 ERLQENPAAYDKGGEMHYDI-------------------ISAFIKSIRGSDPDAAVYWLA 265

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +       P    R L+  A + +G+  P+
Sbjct: 266 RMVAGGEDPEFIARRLVISASEDIGLANPN 295


>gi|85059088|ref|YP_454790.1| recombination factor protein RarA [Sodalis glossinidius str.
           'morsitans']
 gi|84779608|dbj|BAE74385.1| putative ATPase protein [Sodalis glossinidius str. 'morsitans']
          Length = 447

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 75/335 (22%), Positives = 119/335 (35%), Gaps = 42/335 (12%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
            S+N  Q     + +RP TLEE+ GQ    +  K      K     L  ++  GPPG GK
Sbjct: 8   FSQNAFQ--PLAARMRPSTLEEYIGQSHLLAADKPLPRVIK--NGQLHSMILWGPPGTGK 63

Query: 68  TTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           TTLA+++AR   V+    S        I +A + A L  +   R +LF+DE+HR +   +
Sbjct: 64  TTLAELIARYGQVDVERLSAVTSGIKEIREAIERACLNRDAGRRTILFVDEVHRFNKGQQ 123

Query: 123 EILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +   P +E+  +  +    E PS       LSR  +                  G+    
Sbjct: 124 DAFLPHIEEGTITFIGATTENPSFELNSALLSRAKVYLLK--------------GLTAED 169

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
               ++      QRG     + +  E    +A    G  R A   L  + D AE      
Sbjct: 170 IGLVLDQAMQDSQRGYGGQNIVLQPETRQLLAAWVNGDARRALNSLEMMADMAETDAEGQ 229

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
                A    +    ++   ++ D  Y               + ISA     R +  D  
Sbjct: 230 RVLTPALLNEIAGERNERFDNKGDRYY---------------DLISALHKSVRGSSPDGA 274

Query: 301 EPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
             +  +       P    R L+ IA + +G   P 
Sbjct: 275 LYWYARIITAGGDPLYVARRLLAIASEDVGNADPR 309


>gi|238792411|ref|ZP_04636045.1| Replication-associated recombination protein A [Yersinia intermedia
           ATCC 29909]
 gi|238728337|gb|EEQ19857.1| Replication-associated recombination protein A [Yersinia intermedia
           ATCC 29909]
          Length = 444

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 69/337 (20%), Positives = 116/337 (34%), Gaps = 42/337 (12%)

Query: 8   LSRNVSQED--ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           +S + SQ +     + +RP TL+++ GQ    +  K    A  A    L  ++  GPPG 
Sbjct: 1   MSLDFSQNEFQPLAARMRPLTLDQYIGQQHLLAPGKPLPRAIVAGQ--LHSMILWGPPGT 58

Query: 66  GKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GKTTLA+++ R    +    S        I +A + A    +   R +LF+DE+HR +  
Sbjct: 59  GKTTLAEIIGRYGQADVERISAVTSGIKEIREAIERARQNRDAGRRTILFVDEVHRFNKS 118

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++   P +ED  +  +    E PS       LSR  +             + D      
Sbjct: 119 QQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKALTAADIEKVID------ 172

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
                      +   RG     + + D+    ++    G  R A   L  + D AE+   
Sbjct: 173 --------QAMSDSGRGYGGQNIKLPDDTRRMMSELVGGDARRALNSLEMMADMAEIDAN 224

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
                       +         ++ D  Y               + ISA     R +  D
Sbjct: 225 GVRVLTPDLLKEVSGERSARFDNKGDRYY---------------DLISAVHKSIRGSAPD 269

Query: 299 LIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
               +  +       P    R L+ IA + +G   P 
Sbjct: 270 AALYWYARIITAGGDPLYVARRLLAIASEDVGNADPR 306


>gi|265751828|ref|ZP_06087621.1| recombination factor protein RarA [Bacteroides sp. 3_1_33FAA]
 gi|263236620|gb|EEZ22090.1| recombination factor protein RarA [Bacteroides sp. 3_1_33FAA]
          Length = 425

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 76/330 (23%), Positives = 120/330 (36%), Gaps = 52/330 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP+TL+++ GQ        V  +   A    +   +  GPPG+GKTTLAQ++A 
Sbjct: 4   PLAERLRPKTLDDYIGQKHLVGPGAVLRKMIDA--GRISSFILWGPPGVGKTTLAQIIAN 61

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAM 129
           +L   F + S  V +   D+  ++              +LFIDEIHR S   ++ L  A+
Sbjct: 62  KLETPFYTLSA-VTSGVKDVRDVIEKARSNHFFSQASPILFIDEIHRFSKSQQDSLLGAV 120

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E   + L+    E PS   ++  LSR  L    +        L                 
Sbjct: 121 ETGVVTLIGATTENPSFEVIRPLLSRCQLYVLKSLEKEDLLELLHN-------------A 167

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           +   V    K   + + +  A  +   S G  R    +L  V +    A    IT E   
Sbjct: 168 IAKDV--ILKEKKIELKETDA--MLRFSGGDARKLLNILELVVEADADAGTIVITDEKVT 223

Query: 248 AALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
             L +   A DK G    D+                   ISA +   R +  D    ++ 
Sbjct: 224 ERLQQNPLAYDKDGEMHYDI-------------------ISAFIKSIRGSDPDGALYWLA 264

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +       P    R L+  A + +G+  P+
Sbjct: 265 RMVEAGEDPAFIARRLVISAAEDIGLANPN 294


>gi|330998553|ref|ZP_08322373.1| ATPase, AAA family protein [Paraprevotella xylaniphila YIT 11841]
 gi|329568151|gb|EGG49970.1| ATPase, AAA family protein [Paraprevotella xylaniphila YIT 11841]
          Length = 423

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 74/328 (22%), Positives = 122/328 (37%), Gaps = 49/328 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP+TL+++ GQ        V  +     +  +   +  GPPG+GKTTLAQ++A 
Sbjct: 4   PLAERLRPQTLDDYIGQKHLVGPDAVLRKMI--DSGRISSFILWGPPGVGKTTLAQIIAH 61

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAM 129
           +L   F + S  V +   D+  ++    +         +LFIDEIHR S   ++ L  A+
Sbjct: 62  KLETPFYTLSA-VTSGVKDVREVIEKARNNRFFTQASPILFIDEIHRFSKSQQDSLLGAV 120

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E   + L+    E PS   ++  LSR  L    +                       +E 
Sbjct: 121 EQGTVTLIGATTENPSFEVIRPLLSRCQLYVLKSLTKDDL-----------------MEL 163

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           L   V+R   L    +       +   S G  R    +L  V    E      +    A 
Sbjct: 164 LHKAVERDIILKTKHIEFRETDAMLRYSGGDARKLLNILELVV---EADGTDQVVITDAV 220

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
            A  RL  + + +D               GG +  + ISA +   R +  D    ++ + 
Sbjct: 221 VA-ERLQQNPLAYD--------------KGGELHYDIISAFIKSIRGSDPDAALYWLARM 265

Query: 308 GFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                 P    R L+  A + +G+  P+
Sbjct: 266 IEGGEDPSFIARRLVISASEDIGLANPN 293


>gi|168236871|ref|ZP_02661929.1| AAA ATPase, central domain protein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|194734760|ref|YP_002114014.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|194710262|gb|ACF89483.1| AAA ATPase, central domain protein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197290124|gb|EDY29481.1| AAA ATPase, central domain protein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
          Length = 447

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 70/326 (21%), Positives = 110/326 (33%), Gaps = 40/326 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP  L ++ GQ    +  K    A +A    L  ++  GPPG GKTTLA+V+AR
Sbjct: 15  PLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIAR 72

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
               +    S        I +A + A    N   R +LF+DE+HR +   ++   P +ED
Sbjct: 73  YASADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED 132

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             +  +    E PS       LSR  +    +        + D                 
Sbjct: 133 GTITFIGATTENPSFELNSALLSRARVYLLKSLTTDDIEQVLD--------------QAM 178

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
               RG     + + DE    IA    G  R A   L  + D AE   +       +   
Sbjct: 179 QDKTRGYGDQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEADDSGKRVLLPSLLT 238

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
            +         ++ D  Y               + ISA     R +  D    +  +   
Sbjct: 239 EIAGERSARFDNKGDRFY---------------DLISALHKSVRGSAPDAALYWYARIIT 283

Query: 310 IQRTPR--GRLLMPIAWQHLGIDIPH 333
               P    R  + IA + +G   P 
Sbjct: 284 AGGDPLYVARRCLAIASEDVGNADPR 309


>gi|238926943|ref|ZP_04658703.1| recombination ATPase [Selenomonas flueggei ATCC 43531]
 gi|238885177|gb|EEQ48815.1| recombination ATPase [Selenomonas flueggei ATCC 43531]
          Length = 447

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 73/346 (21%), Positives = 127/346 (36%), Gaps = 52/346 (15%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M ++  L +R   Q       +RPRTL++F GQ       K+     +  ++ +  ++F 
Sbjct: 3   MDEQGRLFARAAYQ--PLAERVRPRTLDDFVGQEHLLGQGKILRRLIE--SDRITSMIFW 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEI 114
           GPPG+GKTTLAQ++A      F + S  V +   ++  ++          +R V+F+DEI
Sbjct: 59  GPPGVGKTTLAQIIAARTKAEFITFSA-VTSGIKEIRTVMQEADRRRMYGERIVVFVDEI 117

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++   P +E   + L+    E PS       LSR  +             L  
Sbjct: 118 HRFNKAQQDAFLPFVEKGSIVLIGATTENPSFEINNALLSRCRVFVLQGLTEADIERLL- 176

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R  I                 R      + ++++    +A  + G  R A   L  +   
Sbjct: 177 RHAIATD--------------RELSQMHIHLSNDGITAVAAFANGDARSALSTLEMLLLN 222

Query: 233 AEVAHAKTITREIADA---ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGL 289
           A+    +    E   A       L  DK G +  +L                   ISA  
Sbjct: 223 ADERDGELYVTEENLAQCITRKTLLYDKNGEEHYNL-------------------ISALH 263

Query: 290 SEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
              R++  D    ++ +       P    R ++  A + +G+  P 
Sbjct: 264 KSMRNSDPDAAVYWLARMLESGEDPLYVARRVVRFAAEDVGLADPR 309


>gi|307314388|ref|ZP_07593994.1| AAA ATPase central domain protein [Sinorhizobium meliloti BL225C]
 gi|306899086|gb|EFN29728.1| AAA ATPase central domain protein [Sinorhizobium meliloti BL225C]
          Length = 436

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 76/336 (22%), Positives = 120/336 (35%), Gaps = 55/336 (16%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
             ++        LRPRTL E TGQ        V        + +L  ++F GPPG GKTT
Sbjct: 11  PEMASARPLADRLRPRTLAEVTGQEHLTGPDGVLTRMI--ASGSLGSMIFWGPPGTGKTT 68

Query: 70  LAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           +A++++ E G+ F   S        + K  + A        + +LF+DEIHR +   ++ 
Sbjct: 69  VARLLSGEAGLAFEQISAIFSGVADLKKVFESARARRMSGRQTLLFVDEIHRFNRAQQDS 128

Query: 125 LYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             P MED  + L+    E PS       LSR                        +    
Sbjct: 129 FLPVMEDGTVILVGATTENPSFELNAALLSR---------------------ARVLTFKP 167

Query: 183 YEIEDLKTIVQR--GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           ++   L+ +++R   A+   L + DEA   +   + G  R    L   V   A       
Sbjct: 168 HDEASLEELLKRAEAAEGKPLPLDDEARASLIRMADGDGRAVLTLAEEVWRAAR------ 221

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVG-IETISAGLSEPRDAIEDL 299
                          D  G  +     +   A  +  G  G    ISA     R +  D 
Sbjct: 222 ----------REEIFDSAGLQE----IVQRRAPVYDKGQDGHYNLISALHKSVRGSDPDA 267

Query: 300 IEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
              Y+ +       P   GR L+ +A + +G+  P 
Sbjct: 268 ALYYLCRMFDAGEDPLYIGRRLVRMAVEDIGLADPQ 303


>gi|229186639|ref|ZP_04313800.1| hypothetical protein bcere0004_41820 [Bacillus cereus BGSC 6E1]
 gi|118418782|gb|ABK87201.1| Recombination protein MgsA [Bacillus thuringiensis str. Al Hakam]
 gi|228596898|gb|EEK54557.1| hypothetical protein bcere0004_41820 [Bacillus cereus BGSC 6E1]
          Length = 474

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 80/340 (23%), Positives = 130/340 (38%), Gaps = 43/340 (12%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           ++R+  L   V  +      +RP  ++E  GQ       K+     +A       ++  G
Sbjct: 37  IERDYTLRETVKMKQPLAHRMRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYG 94

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSI 119
           PPG GKT++A  +A   G  FR  +  V     D+  ++   +     VL +DE+HRL  
Sbjct: 95  PPGTGKTSIASAIAGSTGTPFRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDK 153

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             ++ L P +E   L L+      P         SR        ++  L    +D   I 
Sbjct: 154 AKQDFLLPHLESGLLTLIGATTSNPFHAINSAIRSRC-------QIFELHALTEDDLLIG 206

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR--DFAEV 235
           ++    + E       +G     + VT EA    A  S G  R A   L       F   
Sbjct: 207 LKRALEDKE-------KGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTD 259

Query: 236 AHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
             A  IT EIA+  L + +   DK G    D+  L+   ++  G  V             
Sbjct: 260 DKAAEITLEIAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDV------------N 305

Query: 294 DAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            A+  L    +I+ G +Q    GR L+ +A++ +G+  P 
Sbjct: 306 AALHYLAR--LIEAGDLQSI--GRRLLIMAYEDIGLASPQ 341


>gi|71282024|ref|YP_269469.1| recombination factor protein RarA [Colwellia psychrerythraea 34H]
 gi|71147764|gb|AAZ28237.1| ATPase, AAA family [Colwellia psychrerythraea 34H]
          Length = 511

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 65/331 (19%), Positives = 120/331 (36%), Gaps = 33/331 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP+TL ++ GQ           ++ +        ++F GPPG GKTTLA+++A+
Sbjct: 58  PLAAKMRPKTLADYVGQQHILGGDSPLAQSIEQGH--CHSLIFWGPPGSGKTTLAEIIAQ 115

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE----------DRDVLFIDEIHRLSIIVEEILY 126
                    S  V +   ++ + +   +           R VLF+DE+HR +   ++   
Sbjct: 116 HANAEIERVSA-VTSGIKEIRSAIEKAKLRAQGEGANKRRTVLFVDEVHRFNKSQQDAFL 174

Query: 127 PAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           P +ED  +  +    E P+    +  LSR        R+  L    +D     ++     
Sbjct: 175 PHIEDGTIIFIGATTENPAFELNQALLSR-------ARLYTLKKLTRDDLAQVLQRAISL 227

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            E          +   + ++ +A   +  RS G  R    LL    D +   H      +
Sbjct: 228 CE--------AEQQLSIKLSVDAKQSLLNRSDGDARRLLNLLENCLDSSVTTHENKQDDQ 279

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
             +  +    I  +  + +     + IA    GG    + ISA     R +  D    + 
Sbjct: 280 HGEQGVS-GDIKTVTVELIAQVAGSKIALYDKGGDAFYDLISAFHKSVRGSSPDAALYWY 338

Query: 305 IQQG--FIQRTPRGRLLMPIAWQHLGIDIPH 333
            +            R L+ IA + +G   P 
Sbjct: 339 ARILTAGGDALYVARRLLAIASEDIGNADPR 369


>gi|159902628|ref|YP_001549972.1| recombination factor protein RarA [Prochlorococcus marinus str. MIT
           9211]
 gi|159887804|gb|ABX08018.1| putative ATPase, AAA family [Prochlorococcus marinus str. MIT 9211]
          Length = 455

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 65/336 (19%), Positives = 130/336 (38%), Gaps = 43/336 (12%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
            + + ++      LRP TL++F GQ       ++   A +   + + ++LF GPPG+GKT
Sbjct: 11  DQELKRQAPLAERLRPTTLDDFVGQQAILGPGRLLRRAIEC--DRVGNILFQGPPGIGKT 68

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIV 121
           TL++++A     +F   +  V++   +L   +   ++       R +LFIDE+HR +   
Sbjct: 69  TLSKIIASNTRAHFSELNA-VLSGIKELRQEIDAAKNRLGQHGLRTILFIDEVHRFTTSQ 127

Query: 122 EEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           ++ L P +E+     +    E P     +  +SR  +             + DR      
Sbjct: 128 QDALLPWVENGTFIFIGATTENPYFEVNQALVSRSRVFRLRPLQEKDMYQILDR------ 181

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
                       +++G     + +T +A   +   + G  R     L    +  +     
Sbjct: 182 --------ALKDIEKGYGAKEIKLTIQAKNHLIDVANGDARSLLNALELAVETTQADDKG 233

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  +I+ A        +    +  + Y          G    +TISA +   R +  D 
Sbjct: 234 CINIDISIA--------EESIQERAVLYN-------KNGDAHFDTISAFIKSLRGSDPDA 278

Query: 300 IEPYMIQQGFIQRTPRG--RLLMPIAWQHLGIDIPH 333
              ++ Q      +PR   R ++  A + +G+  P+
Sbjct: 279 ALFWLAQMLEAGESPRYIFRRMLIAAAEDIGLADPN 314


>gi|206900704|ref|YP_002250508.1| ATPase, AAA family [Dictyoglomus thermophilum H-6-12]
 gi|206739807|gb|ACI18865.1| ATPase, AAA family [Dictyoglomus thermophilum H-6-12]
          Length = 431

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 83/346 (23%), Positives = 125/346 (36%), Gaps = 51/346 (14%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MDR+  L +     +     +RPRTLEEF G  +         +A       L  ++  G
Sbjct: 1   MDRQESLFKEDHNYEPLSFRMRPRTLEEFLGAEDIIGENSFLRKAINK--GYLPSLIVYG 58

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEI 114
           PPG GKTTL+ ++A+ +   F   +  ++    +L   L            R VLF+DEI
Sbjct: 59  PPGSGKTTLSILLAKAINAEFIELNAAIV-GVQELKEALQRARRNLELYGKRTVLFLDEI 117

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           H  + + +++L P +E   + L+    E P        LSR  LI           PL +
Sbjct: 118 HHFNRLQQDVLLPFVEKGTIILIGATTENPFFALNTTLLSRCRLIEL--------KPLSN 169

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
                I     E ED      RG     L +TD+A  EI   + G  RIA   L      
Sbjct: 170 ENIEKILRRALEDED------RGLGKKKLQITDDAIEEIVRFANGDARIALNTLELASFM 223

Query: 233 AEVAHAKTITREIA----DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAG 288
           A       +  +               D+ G +                      TISA 
Sbjct: 224 ASPLEDGRLMIDRDVVKEVIGKRVFRYDQKGDEHYH-------------------TISAF 264

Query: 289 LSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           +   R +  D    Y+ +       PR   R L+  A + +G+  P
Sbjct: 265 IKSIRGSDPDAALYYLAKMLLSGEDPRFIARRLIIHAAEDIGMADP 310


>gi|315287521|gb|EFU46932.1| replication-associated recombination protein A [Escherichia coli MS
           110-3]
          Length = 428

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 73/326 (22%), Positives = 115/326 (35%), Gaps = 50/326 (15%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  L ++ GQ    +  K    A +A    L  ++  GPPG GKTTLA+V+AR    +
Sbjct: 1   MRPENLAQYIGQQHLLAVGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIARYANAD 58

Query: 82  FRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
               S        I +A + A    N   R +LF+DE+HR +   ++   P +ED  +  
Sbjct: 59  VERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 118

Query: 137 M--VGEGPSARSVKINLSRFTLIAATT-----RVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           +    E PS       LSR  +    +        +LT  ++D+                
Sbjct: 119 IGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDK---------------- 162

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
               RG     + + DE    IA    G  R A   L  + D AEV  +     +     
Sbjct: 163 ---TRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKPELLT 219

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
            +         ++ D  Y               + ISA     R +  D    +  +   
Sbjct: 220 EIAGERSARFDNKGDRFY---------------DLISALHKSVRGSAPDAALYWYARIIT 264

Query: 310 IQRTPR--GRLLMPIAWQHLGIDIPH 333
               P    R  + IA + +G   P 
Sbjct: 265 AGGDPLYVARRCLAIASEDVGNADPR 290


>gi|291295124|ref|YP_003506522.1| AAA ATPase central domain-containing protein [Meiothermus ruber DSM
           1279]
 gi|290470083|gb|ADD27502.1| AAA ATPase central domain protein [Meiothermus ruber DSM 1279]
          Length = 432

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 75/326 (23%), Positives = 116/326 (35%), Gaps = 54/326 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP TL++  GQ       K      + +   L   +  GPPG GKTTLA+++A+
Sbjct: 16  PLAERLRPTTLDDVVGQEHLTGPGKPLRRMLETQ--RLSSFILWGPPGSGKTTLARLMAQ 73

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
            +G    + S  V A   D+  ++   ++    VLF+DEIHR +   ++ L P +E   L
Sbjct: 74  GVGRAMVALSA-VNAGLKDIKEVVAQAQEQGGLVLFLDEIHRFNKAQQDALLPHVESGLL 132

Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            L+    E PS        SR  +                             E ++ ++
Sbjct: 133 TLIGATTENPSFEVNPALRSRARVYVL---------------------EPLGQEAIQRLL 171

Query: 193 QRGA---KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
           +R     +        EA   IA  + G  R A   L      A       ++   A  A
Sbjct: 172 ERALHHPQGLPAQAEPEALHLIAQAAMGDARRALSALE----LAASLGEGQVSVAAAREA 227

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           L R     +GFD               GG    + ISA     R    D    Y+ +   
Sbjct: 228 LGRG---TLGFD--------------KGGEHFYDLISALHKSVRGNHVDAALYYLARMLE 270

Query: 310 IQRTP--RGRLLMPIAWQHLGIDIPH 333
               P    R L  +A + +G+  P+
Sbjct: 271 GGADPLYLARRLARMAVEDVGLADPN 296


>gi|281422083|ref|ZP_06253082.1| replication-associated recombination protein A [Prevotella copri
           DSM 18205]
 gi|281403872|gb|EFB34552.1| replication-associated recombination protein A [Prevotella copri
           DSM 18205]
          Length = 424

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 75/331 (22%), Positives = 125/331 (37%), Gaps = 53/331 (16%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +     +RP TL ++ GQ        V  +   A    +   +  GPPG+GKTTLAQ+VA
Sbjct: 3   EPLAERMRPHTLADYVGQQHLVGEGAVLRKMIDA--GRISSFILWGPPGVGKTTLAQIVA 60

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPA 128
           + + V F + S  V +   D+  ++   +          +LFIDEIHR S   ++ L  A
Sbjct: 61  QTIKVPFFTLSA-VTSGVKDVREVIERAKSGRFFNSASPILFIDEIHRFSKSQQDSLLGA 119

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           +E   + L+    E PS   ++  LSR  L             L  R             
Sbjct: 120 VEKGIVTLIGATTENPSFEVIRPLLSRCQLYVLKPLEKADLEGLLHR------------- 166

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
            +   V+   +   + + +  A      S G  R    +L  V + A  +    IT ++ 
Sbjct: 167 AITQDVE--LREKNIKLEETGAL--LRYSGGDARKLLNILELVVESAGSSEI-VITDKMV 221

Query: 247 DAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +  L +   A DK G    D+                   ISA +   R +  D    +M
Sbjct: 222 EEQLQQNPLAYDKQGEMHYDI-------------------ISAFIKSIRGSDPDAALYWM 262

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +       P+   R ++  A + +G+  P+
Sbjct: 263 ARMIEGGEDPQFIARRVVISASEDVGLANPN 293


>gi|213581061|ref|ZP_03362887.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 430

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 74/326 (22%), Positives = 111/326 (34%), Gaps = 40/326 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP  L ++ GQ    +  K    A +A    L  ++  GPPG GKTTLA+V+AR
Sbjct: 15  PLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIAR 72

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
               +    S        I +A + A    N   R +LF+DE+HR +   ++   P +ED
Sbjct: 73  YASADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED 132

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             +  +    E PS       LSR  +    +        + D                 
Sbjct: 133 GTITFIGATTENPSFELNSALLSRARVYLLKSLTTDDIEQVLD--------------QAM 178

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
               RG     + + DE    IA    G  R A   L  + D AE   +          A
Sbjct: 179 QDKTRGYGDQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEADDSGKRVL---LPA 235

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           LL     +              AR    G    + ISA     R +  D    +  +   
Sbjct: 236 LLTEIAGERS------------ARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIIT 283

Query: 310 IQRTPR--GRLLMPIAWQHLGIDIPH 333
               P    R  + IA + +G   P 
Sbjct: 284 AGGDPLYVARRCLAIASEDVGNADPR 309


>gi|78485111|ref|YP_391036.1| recombination factor protein RarA [Thiomicrospira crunogena XCL-2]
 gi|78363397|gb|ABB41362.1| Recombination protein MgsA [Thiomicrospira crunogena XCL-2]
          Length = 453

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 69/337 (20%), Positives = 126/337 (37%), Gaps = 48/337 (14%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
                      LRP+TL++F GQ       +   +  +  +  +  ++F GPPG GKTTL
Sbjct: 2   EYQAYQPLSDRLRPQTLDDFVGQTHLLGKGRALSKMFE--SGRMHSMIFWGPPGTGKTTL 59

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEE 123
           A+++A++  + F + S  V+    ++ A +          +   +LF+DE+HR +   ++
Sbjct: 60  ARLIAKQSDLQFLNLSA-VLDGVKEVRAAVEQAKLHRQQFQQGSLLFVDEVHRFNKAQQD 118

Query: 124 ILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
              P +ED     +    E PS       LSR  +    +                    
Sbjct: 119 AFLPFVEDGTFIFIGATTENPSFELNNALLSRARVYVLRS-------------------- 158

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEI------AMRSRGTPRIAGRLLRRVRDFAEV 235
             + +DL+ ++ R  +L    ++     E          S G  R    LL +  DFAEV
Sbjct: 159 -LDEDDLQQVLNRATELLNQELSQPLRIEPDAQAALIQFSDGDARRLLNLLEQAVDFAEV 217

Query: 236 AHAKTITREIADA--ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
             +     E  +    L+ L ++              + R   GG    + ISA     R
Sbjct: 218 IPSDEADAETDENPPGLVVLTVENCRE-----VIQGGVRRFDKGGEAFYDQISALHKSIR 272

Query: 294 DAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLG 328
            +  +    ++ +        R   R L+ +A + +G
Sbjct: 273 GSDANAALYWLTRMLDGGVDARYLARRLIRMASEDIG 309


>gi|291616896|ref|YP_003519638.1| YcaJ [Pantoea ananatis LMG 20103]
 gi|291151926|gb|ADD76510.1| YcaJ [Pantoea ananatis LMG 20103]
          Length = 455

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 79/337 (23%), Positives = 119/337 (35%), Gaps = 42/337 (12%)

Query: 8   LSRNVSQED--ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           LS + S ED     + +RP TL+ + GQ    +  K    A +A    L  ++  GPPG 
Sbjct: 12  LSLDFSSEDFKPLAARMRPETLKHYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGT 69

Query: 66  GKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GKTTLA+++A     +    S        I +A + A L      R +LF+DE+HR +  
Sbjct: 70  GKTTLAEIIAHYGNADVERISAVTSGVKEIREAIERARLSKQAGRRTILFVDEVHRFNKK 129

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
               L  A ED  +  +    E PS       LSR  +    +        + D      
Sbjct: 130 SAGCLPAAHEDGTITFIGATTENPSFELNSALLSRARVYLLKSLTTEDIEQVLD------ 183

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
                          RG   + + + +     IA    G  R A   L  + D AE    
Sbjct: 184 --------QAMQDADRGYGNSDILLPNNTRRMIAELVSGDARRALNTLEMMADMAETNAQ 235

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
               RE+    L  +A ++              AR    G    + ISA     R +  D
Sbjct: 236 GK--RELTPQLLTEVAGERS-------------ARFDNKGDRFYDLISALHKSVRGSAPD 280

Query: 299 LIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
               +  +       P    R L+ IA + +G   P 
Sbjct: 281 AALYWYARIITAGGDPLYVARRLLAIASEDVGNADPR 317


>gi|323691840|ref|ZP_08106096.1| AAA ATPase central domain-containing protein [Clostridium symbiosum
           WAL-14673]
 gi|323504122|gb|EGB19928.1| AAA ATPase central domain-containing protein [Clostridium symbiosum
           WAL-14673]
          Length = 444

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 79/351 (22%), Positives = 132/351 (37%), Gaps = 60/351 (17%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MMD+  L   N        S +RP TL+ F GQ       KV     +   + +  ++F 
Sbjct: 1   MMDQLSLFD-NRETTSPLASRIRPDTLDGFVGQKHLIGEGKVLRNLIEK--DQVTSMIFW 57

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEI 114
           GPPG+GKTTLA+++A +   +F   S  V +   ++  ++   E       R +LF+DEI
Sbjct: 58  GPPGVGKTTLARIIAGKTRSSFIDFSA-VTSGIKEIKTVMEQAEKNRSMGIRTILFVDEI 116

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++   P +E   + L+    E PS       LSR  +                
Sbjct: 117 HRFNKAQQDAFLPYVEKGSIILIGATTENPSFEINSALLSRCKV---------------- 160

Query: 173 RFGIPIRLNFYEIEDLKTIVQ--RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
            F +         E L  +V+  +G     + ++ E    IA  + G  R A   L    
Sbjct: 161 -FVLKALTAEELAELLAAVVKSPKGFGNQHVQISKEQLFFIANFANGDARTALNTLEMAV 219

Query: 231 DFAEVAHAKTITREIADAALLRLA------IDKMGFDQLDLRYLTMIARNFGGGPVGIET 284
              E+  + T++  + +  L +         DK G +  +L                   
Sbjct: 220 LNGELDRSGTLS--VTNQVLEQCTNKKSLLYDKKGEEHYNL------------------- 258

Query: 285 ISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           ISA     R++  D    ++ +       P    R L+  A + +GI  P 
Sbjct: 259 ISALHKSMRNSDPDAAVYWLARMLEAGEDPLYVARRLIRFASEDIGIADPQ 309


>gi|325270474|ref|ZP_08137076.1| AAA family ATPase [Prevotella multiformis DSM 16608]
 gi|324987197|gb|EGC19178.1| AAA family ATPase [Prevotella multiformis DSM 16608]
          Length = 406

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 79/337 (23%), Positives = 129/337 (38%), Gaps = 65/337 (19%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +     +RPRTL+++ GQ        V        +  +   +  GPPG+GKTTLAQ++A
Sbjct: 2   EPLAERMRPRTLDDYIGQQHLVGEGAVLRRMI--DSGRIASFILWGPPGVGKTTLAQIIA 59

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPA 128
             L   F + S  V +   D+  ++   +          +LFIDEIHR S   ++ L  A
Sbjct: 60  HRLETPFYTLSA-VTSGVKDVRDVIERAQKGRFFNSASPILFIDEIHRFSKSQQDSLLGA 118

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           +E   + L+    E PS   ++  LSR  L         +  PL             E +
Sbjct: 119 VEKGTVTLIGATTENPSFEVIRPLLSRCQL--------YVLKPL-------------EKD 157

Query: 187 DLKTIVQRG------AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           DL T++ R        K   + + +  A      S G  R    +L  + D A      T
Sbjct: 158 DLLTLLHRAVAEDTELKKRHIDLHETDAL--LRYSGGDARKLLNILELIVDAAP-DGTVT 214

Query: 241 ITREIADAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
           +T  I +  L +   A DK G    D+                   ISA +   R +  +
Sbjct: 215 VTDRIVEERLQQNPLAYDKDGEMHYDI-------------------ISAFIKSIRGSDPE 255

Query: 299 LIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
               +M +       P+   R ++  A + +G+  P+
Sbjct: 256 AALYWMARMIEGGEDPKFIARRVVISAAEDIGLANPN 292


>gi|238749783|ref|ZP_04611288.1| Replication-associated recombination protein A [Yersinia rohdei
           ATCC 43380]
 gi|238712438|gb|EEQ04651.1| Replication-associated recombination protein A [Yersinia rohdei
           ATCC 43380]
          Length = 444

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 70/337 (20%), Positives = 115/337 (34%), Gaps = 42/337 (12%)

Query: 8   LSRNVSQED--ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           +S + SQ +     + +RP TL+++ GQ    +  K    A  A    L  ++  GPPG 
Sbjct: 1   MSLDFSQNEFQPLAARMRPLTLDQYIGQQHLLAPGKPLPRAIVAGQ--LHSMILWGPPGT 58

Query: 66  GKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GKTTLA+++ R    +    S        I +A + A    +   R +LF+DE+HR +  
Sbjct: 59  GKTTLAEIIGRYGQADVERISAVTSGIKEIREAIERARQNRDAGRRTILFVDEVHRFNKS 118

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++   P +ED  +  +    E PS       LSR  +             + D      
Sbjct: 119 QQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKALTAADIEKVID------ 172

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
                      +   RG     + + DE    ++    G  R A   L  + D AE    
Sbjct: 173 --------QAMSDSSRGYGGQNIKLPDETRRMMSELVGGDARRALNSLEMMADMAETDAN 224

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
                       +         ++ D  Y               + ISA     R +  D
Sbjct: 225 GVRVLTPDLLKEVSGERSARFDNKGDRYY---------------DLISAVHKSIRGSAPD 269

Query: 299 LIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
               +  +       P    R L+ IA + +G   P 
Sbjct: 270 AALYWYARIITAGGDPLYVARRLLAIASEDVGNADPR 306


>gi|227112002|ref|ZP_03825658.1| recombination factor protein RarA [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 447

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 73/326 (22%), Positives = 114/326 (34%), Gaps = 40/326 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP TL ++ GQ       K    A +A    L  ++  GPPG GKTTLA+++  
Sbjct: 15  PLAARMRPATLAQYIGQQHLLGAGKPLPRAIEAGQ--LHSMILWGPPGTGKTTLAELIGH 72

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
               +    S        I +A + A    N   R +LF+DE+HR +   ++   P +ED
Sbjct: 73  YGQADVERISAVTSGIKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED 132

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             +  +    E PS       LSR        RV LL     +     ++    + E   
Sbjct: 133 GTITFIGATTENPSFELNSALLSR-------ARVYLLKALTAEDIEQVLQQAMSDSE--- 182

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
               RG     + +  E A  +A    G  R A   L  + D AE+          A   
Sbjct: 183 ----RGYGGQNIVLPAETARMVAELVNGDARRALNSLEMMADMAEIDAQGMRVLTPALLN 238

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
            +         ++ D  Y               + ISA     R +  D    +  +   
Sbjct: 239 EIAGERSARFDNKGDRYY---------------DLISALHKSVRGSSPDAALYWYARIIT 283

Query: 310 IQRTPR--GRLLMPIAWQHLGIDIPH 333
               P    R L+ IA + +G   P 
Sbjct: 284 AGGDPLYVARRLLAIASEDVGNADPR 309


>gi|296454576|ref|YP_003661719.1| AAA ATPase [Bifidobacterium longum subsp. longum JDM301]
 gi|296184007|gb|ADH00889.1| AAA ATPase, central domain protein [Bifidobacterium longum subsp.
           longum JDM301]
          Length = 459

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 90/364 (24%), Positives = 132/364 (36%), Gaps = 73/364 (20%)

Query: 2   MDREGLLSRNVSQED---ADISLLRPRTLEEFTGQVEACSNLKVFIE----AAKARAEAL 54
           M    L     + E         +RPRTL+E  GQ +              A+K    A 
Sbjct: 1   MSENDLFGAADAPESMTRPLAVRMRPRTLDEVIGQTQVLGQGSPLRRLANPASKGSLTAP 60

Query: 55  DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------D 107
             V+  GPPG+GKTTLA +VA + G  F   S  V +   D+  +LT   +R        
Sbjct: 61  SSVILFGPPGVGKTTLATIVAGQSGRVFEELSA-VTSGVKDVRDVLTRAHERLVSRGQET 119

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGL 165
           VLFIDE+HR S   ++ L PA+E+  +  +    E PS   +K  LSR  ++   +    
Sbjct: 120 VLFIDEVHRFSKSQQDALLPAVENRDVTFIGATTENPSFSIIKPLLSRSVVVKLES---- 175

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK-----LTGLAVTDEAACEIAMRSRGTPR 220
                             E + L  +VQR           +  TDEA  +I   + G  R
Sbjct: 176 -----------------LEPDQLTELVQRALTDDRGLKGEVKATDEAIADIVRMAGGDAR 218

Query: 221 IAGRLLRRVR-----DFAEVAHAKTITREIADAALLRL----AIDKMGFDQLDLRYLTMI 271
            +  +L         D A    A+         A +        DK G D  D+      
Sbjct: 219 KSLTILEAAAGAVTGDEARKKGARRPIITPEIVATVMDTATVRYDKDGDDHYDV------ 272

Query: 272 ARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGI 329
                        ISA +   R +  D    Y+ +       PR   R +M  A + +G+
Sbjct: 273 -------------ISAFIKSMRGSDPDAAIHYLARMLKAGEDPRFIARRIMIAASEEVGM 319

Query: 330 DIPH 333
             P 
Sbjct: 320 AAPQ 323


>gi|212691432|ref|ZP_03299560.1| hypothetical protein BACDOR_00924 [Bacteroides dorei DSM 17855]
 gi|237726280|ref|ZP_04556761.1| recombination factor protein RarA [Bacteroides sp. D4]
 gi|212666042|gb|EEB26614.1| hypothetical protein BACDOR_00924 [Bacteroides dorei DSM 17855]
 gi|229434806|gb|EEO44883.1| recombination factor protein RarA [Bacteroides dorei 5_1_36/D4]
          Length = 425

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 76/330 (23%), Positives = 120/330 (36%), Gaps = 52/330 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP+TL+++ GQ        V  +   A    +   +  GPPG+GKTTLAQ++A 
Sbjct: 4   PLAERLRPKTLDDYIGQKHLVGPGAVLRKMIDA--GRISSFILWGPPGVGKTTLAQIIAN 61

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAM 129
           +L   F + S  V +   D+  ++              +LFIDEIHR S   ++ L  A+
Sbjct: 62  KLETPFYTLSA-VTSGVKDVRDVIEKARSNRFFSQASPILFIDEIHRFSKSQQDSLLGAV 120

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E   + L+    E PS   ++  LSR  L    +        L                 
Sbjct: 121 ETGVVTLIGATTENPSFEVIRPLLSRCQLYVLKSLEKEDLLELLHN-------------A 167

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           +   V    K   + + +  A  +   S G  R    +L  V +    A    IT E   
Sbjct: 168 IAKDV--ILKEKKIELKETDA--MLRFSGGDARKLLNILELVVEADADAGTIVITDEKVT 223

Query: 248 AALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
             L +   A DK G    D+                   ISA +   R +  D    ++ 
Sbjct: 224 ERLQQNPLAYDKDGEMHYDI-------------------ISAFIKSIRGSDPDGALYWLA 264

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +       P    R L+  A + +G+  P+
Sbjct: 265 RMVEAGEDPAFIARRLVISAAEDIGLANPN 294


>gi|82701313|ref|YP_410879.1| recombination factor protein RarA [Nitrosospira multiformis ATCC
           25196]
 gi|82409378|gb|ABB73487.1| Recombination protein MgsA [Nitrosospira multiformis ATCC 25196]
          Length = 437

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 73/325 (22%), Positives = 112/325 (34%), Gaps = 50/325 (15%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
             LRP  L++  GQ       K    A +  +     ++  GPPG GKTTLA+++A    
Sbjct: 16  EQLRPHELKDVVGQPHLLGPGKPLRLAFE--SGKPHSMILWGPPGSGKTTLARLMASAFD 73

Query: 80  VNFRSTSGPVIAKAGDLA-------ALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
             F + S  V+A   D+        A+L       +LF+DE+HR +   ++   P +E  
Sbjct: 74  AEFIALSA-VLAGVKDIRDAIERARAVLHQSSRHTILFVDEVHRFNKSQQDAFLPFVEQG 132

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
            +  +    E PS       LSR  +   T         L DR                 
Sbjct: 133 LVTFIGATTENPSFEVNGALLSRAQVYVLTALSTTELGTLFDR----------------- 175

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
              R   L  L  T +A   +   + G  R    LL +++  A       I  + A   L
Sbjct: 176 --ARKLALAELDFTPDARSLLIEYADGDARRLLNLLEQLKTAAAAEGISRIDADYARERL 233

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
            R A                  R   GG    + ISA     R +       +M +    
Sbjct: 234 SRAA-----------------RRFDKGGDEFYDQISALHKSLRGSHPHATLYWMCRMLDA 276

Query: 311 QRTPR--GRLLMPIAWQHLGIDIPH 333
              PR   R L+  + + +G+  P 
Sbjct: 277 GADPRYIARRLIRASVEDIGLADPR 301


>gi|300937614|ref|ZP_07152423.1| replication-associated recombination protein A [Escherichia coli MS
           21-1]
 gi|300457344|gb|EFK20837.1| replication-associated recombination protein A [Escherichia coli MS
           21-1]
          Length = 428

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 73/326 (22%), Positives = 115/326 (35%), Gaps = 50/326 (15%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  L ++ GQ    +  K    A +A    L  ++  GPPG GKTTLA+V+AR    +
Sbjct: 1   MRPENLAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIARYANAD 58

Query: 82  FRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
               S        I +A + A    N   R +LF+DE+HR +   ++   P +ED  +  
Sbjct: 59  VERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 118

Query: 137 M--VGEGPSARSVKINLSRFTLIAATT-----RVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           +    E PS       LSR  +    +        +LT  ++D+                
Sbjct: 119 IGATTENPSFELNSALLSRARVYLLKSLSTKDIEQVLTQAMEDK---------------- 162

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
               RG     + + DE    IA    G  R A   L  + D AEV  +     +     
Sbjct: 163 ---TRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKPELLT 219

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
            +         ++ D  Y               + ISA     R +  D    +  +   
Sbjct: 220 EIAGERSARFDNKGDRFY---------------DLISALHKSVRGSAPDAALYWYARIIT 264

Query: 310 IQRTPR--GRLLMPIAWQHLGIDIPH 333
               P    R  + IA + +G   P 
Sbjct: 265 AGGDPLYVARRCLAIASEDVGNADPR 290


>gi|304311214|ref|YP_003810812.1| Uncharacterized ATPase related to the helicase subunit of the
           Holliday junction resolvase [gamma proteobacterium HdN1]
 gi|301796947|emb|CBL45160.1| Uncharacterized ATPase related to the helicase subunit of the
           Holliday junction resolvase [gamma proteobacterium HdN1]
          Length = 467

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 72/338 (21%), Positives = 115/338 (34%), Gaps = 47/338 (13%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L   N        + +RP TLEE+ GQ           +A +        ++  GPPG+G
Sbjct: 4   LFDANSRAWQPLAARMRPLTLEEYAGQEHLLGANGSLRKALELGQA--HSMILWGPPGVG 61

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSII 120
           KTTLA ++A  +   F + S  V++   ++ A +           + +LF+DE+HR +  
Sbjct: 62  KTTLAMLMANYIEAQFITLSA-VLSGVKEIRAAIDEARHYRQQGRQCLLFVDEVHRFNKS 120

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTR-VGLLTNPLQDRFGIP 177
            ++   P +ED  +  +    E PS       LSR  +          +T  L+      
Sbjct: 121 QQDAFLPHIEDGTVIFVGATTENPSFELNGALLSRARVYVLKPLDASAITARLRSAMQDA 180

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                           RG    G+   D     IA  + G  R A  LL      AE   
Sbjct: 181 ----------------RGLAGAGIRAEDAILETIARAADGDMRRAYNLLEIATSLAEADG 224

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
           A  +T  I   A+                      R    G    + ISA     R +  
Sbjct: 225 ADQVTEAILSQAVGEGG-----------------RRFDKHGDQFYDQISALHKAVRGSSP 267

Query: 298 DLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           D    +  +       P    R ++ +A + +G   P 
Sbjct: 268 DGALYWFARMLDGGCDPLYIARRVVRMASEDIGNADPR 305


>gi|322616394|gb|EFY13303.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322619644|gb|EFY16519.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322622660|gb|EFY19505.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322628573|gb|EFY25360.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322634946|gb|EFY31675.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322637036|gb|EFY33739.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322641603|gb|EFY38240.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322644442|gb|EFY40982.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322649588|gb|EFY46019.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322654110|gb|EFY50433.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322659225|gb|EFY55474.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322663499|gb|EFY59701.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322670235|gb|EFY66375.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322671471|gb|EFY67593.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322676827|gb|EFY72894.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322682752|gb|EFY78771.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322686431|gb|EFY82413.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323191717|gb|EFZ76971.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323199758|gb|EFZ84847.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323202197|gb|EFZ87251.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323209022|gb|EFZ93959.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323210414|gb|EFZ95303.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323222450|gb|EGA06824.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323226865|gb|EGA11048.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323229819|gb|EGA13942.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323233044|gb|EGA17140.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323240779|gb|EGA24821.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323243096|gb|EGA27116.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323247418|gb|EGA31374.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323250912|gb|EGA34789.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323256445|gb|EGA40179.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323263111|gb|EGA46653.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323267977|gb|EGA51456.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323270717|gb|EGA54157.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 447

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 74/326 (22%), Positives = 111/326 (34%), Gaps = 40/326 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP  L ++ GQ    +  K    A +A    L  ++  GPPG GKTTLA+V+AR
Sbjct: 15  PLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIAR 72

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
               +    S        I +A + A    N   R +LF+DE+HR +   ++   P +ED
Sbjct: 73  YASADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED 132

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             +  +    E PS       LSR  +    +        + D                 
Sbjct: 133 GTITFIGATTENPSFELNSALLSRARVYLLKSLTTDDIEQVLD--------------QAM 178

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
               RG     + + DE    IA    G  R A   L  + D AE   +          A
Sbjct: 179 QDKTRGYGDQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEADDSGKRVL---WPA 235

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           LL     +              AR    G    + ISA     R +  D    +  +   
Sbjct: 236 LLTEIAGERS------------ARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIIT 283

Query: 310 IQRTPR--GRLLMPIAWQHLGIDIPH 333
               P    R  + IA + +G   P 
Sbjct: 284 AGGDPLYVARRCLAIASEDVGNADPR 309


>gi|296126532|ref|YP_003633784.1| ATPase AAA [Brachyspira murdochii DSM 12563]
 gi|296018348|gb|ADG71585.1| AAA ATPase central domain protein [Brachyspira murdochii DSM 12563]
          Length = 435

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 72/348 (20%), Positives = 126/348 (36%), Gaps = 58/348 (16%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D       +++        +RP ++EE  GQ       K   +      + +  ++F 
Sbjct: 5   MFD----FEEDINSFKPMAERMRPLSIEEVFGQKHILGKDKTLRKMI--DNDKITSMVFF 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEI 114
           GPPG+GK+T+A ++A++    +   +  V++   ++   +   E       + +LFIDEI
Sbjct: 59  GPPGVGKSTVASIIAKKTKSEYIKLNA-VLSNVSEIREAIKKAEKNLENRKKTILFIDEI 117

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSR-----FTLIAATTRVGLLT 167
           HR +   ++ L PA+E+  + L+    + P        LSR     F  +        L 
Sbjct: 118 HRFNKSQQDALLPAVENGSVILIGSTTQNPYFYLNNALLSRIMLFEFRNLDDNDIREALL 177

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             + D                    +RG     +AV D A   I   S G  R A   L 
Sbjct: 178 KAITD--------------------KRGLGEDDVAVEDGAVSLIVRYSHGDVRKAFTYLE 217

Query: 228 RVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISA 287
                 ++   K       +      +   M FD+ D  Y                TISA
Sbjct: 218 ASYLATQIDETKEKLTITEEIVKDVTSKQSMTFDE-DEHY---------------NTISA 261

Query: 288 GLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +   R +  +    Y+ +       PR   R L  +A + +G+  P+
Sbjct: 262 FIKSVRGSDPNAAVYYLARMLEAGEDPRYIARRLCILASEDIGLAEPN 309


>gi|315126411|ref|YP_004068414.1| recombination factor protein RarA [Pseudoalteromonas sp. SM9913]
 gi|315014925|gb|ADT68263.1| recombination factor protein RarA [Pseudoalteromonas sp. SM9913]
          Length = 447

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 74/328 (22%), Positives = 114/328 (34%), Gaps = 45/328 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP +L ++ GQ    S  K   +A  A       ++  GPPG+GKTTLAQ++A 
Sbjct: 14  PLAARMRPLSLNDYIGQQHLLSADKPLHQAIVA--GRCHSLILWGPPGVGKTTLAQIIAN 71

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAM 129
                    S  V A   D+   +T           R ++F+DE+HR +   ++   P +
Sbjct: 72  HADAELIQMSA-VTAGVKDIRDSVTQARDNLQSRGQRTLMFVDEVHRFNKSQQDAFLPHI 130

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ED     +    E PS       LSR        RV +L +  +      I     + E 
Sbjct: 131 EDGTFIFVGATTENPSFALNNAILSR-------ARVYVLKSLQESDLYTVIERALKQDEQ 183

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           L            + + D A   +   S G  R    LL +  D     + K    E   
Sbjct: 184 LSQ--------KQIVIADNAKQALCQASGGDARKVLNLLEQAVDLTTEQNGKYNVDE--- 232

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
                          L     T +A+   GG    + ISA     R +  D    +  + 
Sbjct: 233 -------------QVLSQVLPTHLAKYDKGGDEFYDLISAFHKSVRGSSPDGALYWYCRI 279

Query: 308 GFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                 P    R L+ IA + +G   P 
Sbjct: 280 LAGGGDPLYVARRLLAIATEDIGNADPR 307


>gi|290473946|ref|YP_003466820.1| putative polynucleotide enzyme with nucleotide triphosphate
           hydrolase domain [Xenorhabdus bovienii SS-2004]
 gi|289173253|emb|CBJ80028.1| putative polynucleotide enzyme with nucleotide triphosphate
           hydrolase domain [Xenorhabdus bovienii SS-2004]
          Length = 447

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 74/337 (21%), Positives = 119/337 (35%), Gaps = 42/337 (12%)

Query: 8   LSRNVSQED--ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           LS + SQ +     + +RP TL+ + GQ    +  K    A +A    L  ++  GPPG 
Sbjct: 4   LSLDFSQNEFQPLAARMRPVTLDHYIGQQHLLAEGKPLPRAIRAGH--LHSMILWGPPGT 61

Query: 66  GKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GKTTLA+++      +    S        I ++ + A+   N   R +LF+DE+HR +  
Sbjct: 62  GKTTLAEIIGHYAQADIERISAVTSGIKEIRESIEKASQNRNAGRRTILFVDEVHRFNKS 121

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++   P +ED  +  +    E PS       LSR        RV LL +         +
Sbjct: 122 QQDAFLPHIEDGTITFIGATTENPSFELNSALLSR-------ARVYLLKSLSAAEIEQVL 174

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
                + E       RG     + + D+     A    G  R +  LL  + D AE    
Sbjct: 175 FQAMNDKE-------RGFGGQNIVLQDDTRQMAAELVAGDARRSLNLLEMMSDMAEANAQ 227

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
                       +         ++ D  Y               + ISA     R +  D
Sbjct: 228 GQRVLTPELLKEVSGERSARFDNKGDRYY---------------DLISALHKSIRGSAPD 272

Query: 299 LIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
               +  +       P    R L+ IA + +G   P 
Sbjct: 273 AALYWYARIITAGGDPLYVARRLLAIASEDVGNADPR 309


>gi|332560168|ref|ZP_08414490.1| recombination factor protein RarA [Rhodobacter sphaeroides WS8N]
 gi|332277880|gb|EGJ23195.1| recombination factor protein RarA [Rhodobacter sphaeroides WS8N]
          Length = 437

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 79/345 (22%), Positives = 124/345 (35%), Gaps = 57/345 (16%)

Query: 1   MMDREGLLSRNVSQEDAD---ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           + DRE        Q DA       LRP++L E  GQ +  S        A   + +L  +
Sbjct: 4   LFDRE----PAPPQPDAPRPLADRLRPKSLAEVIGQGKVLSPDGPL--GAMLASGSLSSL 57

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFID 112
           +  GPPG+GKTT+A+++A+E  + F   S      P + K  + A L        +LF+D
Sbjct: 58  ILWGPPGVGKTTIARLLAKETDLAFVQISAIFTGVPDLRKVFEAAKLRRANGQGTLLFVD 117

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           EIHR +   ++   P MED  + L+    E PS       +SR  +I             
Sbjct: 118 EIHRFNKAQQDGFLPHMEDGTILLVGATTENPSFELNAALMSRAQVIVL----------- 166

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
            DR           + DL+ + QR             A     R+      A   L  + 
Sbjct: 167 -DR---------LSLADLERLAQR-------------AEHETGRALPLDGPAREALLEMA 203

Query: 231 DFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
           D             + +  +       +  DQL  R +   A+    G      ISA   
Sbjct: 204 D-----GDGRALLNLVEQVMAWKVKGPLDRDQLATRLMRRAAKYDKSGEEHYNLISALHK 258

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
             R +  D    +  +       PR   R +  +A + +G+  P 
Sbjct: 259 SVRGSDPDAALYWFARMLEGGEDPRFLARRITRMAVEDIGLADPQ 303


>gi|153009313|ref|YP_001370528.1| recombination factor protein RarA [Ochrobactrum anthropi ATCC
           49188]
 gi|151561201|gb|ABS14699.1| AAA ATPase central domain protein [Ochrobactrum anthropi ATCC
           49188]
          Length = 438

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 76/337 (22%), Positives = 120/337 (35%), Gaps = 55/337 (16%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
             N  +       LRP+ L E TGQ        V        + +L  ++F GPPG GKT
Sbjct: 10  DPNADRNRPLADRLRPKHLSEVTGQEHLTGPEGVLTRMI--ASGSLGSMIFWGPPGTGKT 67

Query: 69  TLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           T+A+++A E  + F   S        + K  + A        + +LF+DEIHR +   ++
Sbjct: 68  TVARLLAGETDLAFEQISAIFSGVADLKKVFETARARRMSGRQTLLFVDEIHRFNRAQQD 127

Query: 124 ILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
              P MED  + L+    E PS       LSR                        +  +
Sbjct: 128 SFLPVMEDGTVILIGATTENPSFELNAALLSR---------------------ARVLTFH 166

Query: 182 FYEIEDLKTIVQRG--AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
            ++ E + T++ R    +   L + +EA   +   + G  R A  L   V   A     +
Sbjct: 167 PHDGESIATLLTRAEEQEERPLPLDEEARVSLVRMADGDGRAALTLAEEVWRAA--RPDE 224

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVG-IETISAGLSEPRDAIED 298
             T E     + R A                    +  G  G    ISA     R +  D
Sbjct: 225 VFTAEKLQDVVQRRAP------------------VYDKGQDGHYNLISALHKSVRGSDPD 266

Query: 299 LIEPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
               Y+ +       P   GR L+ +A + +G+  P 
Sbjct: 267 AALYYLSRMFDAGEDPLYLGRRLVRMAVEDIGLADPQ 303


>gi|300823631|ref|ZP_07103758.1| replication-associated recombination protein A [Escherichia coli MS
           119-7]
 gi|300896501|ref|ZP_07115025.1| replication-associated recombination protein A [Escherichia coli MS
           198-1]
 gi|300902951|ref|ZP_07120895.1| replication-associated recombination protein A [Escherichia coli MS
           84-1]
 gi|300929585|ref|ZP_07145048.1| replication-associated recombination protein A [Escherichia coli MS
           187-1]
 gi|300949748|ref|ZP_07163725.1| replication-associated recombination protein A [Escherichia coli MS
           116-1]
 gi|300954715|ref|ZP_07167150.1| replication-associated recombination protein A [Escherichia coli MS
           175-1]
 gi|300978544|ref|ZP_07174297.1| replication-associated recombination protein A [Escherichia coli MS
           45-1]
 gi|300983197|ref|ZP_07176476.1| replication-associated recombination protein A [Escherichia coli MS
           200-1]
 gi|301047850|ref|ZP_07194900.1| replication-associated recombination protein A [Escherichia coli MS
           185-1]
 gi|301302501|ref|ZP_07208632.1| replication-associated recombination protein A [Escherichia coli MS
           124-1]
 gi|301646337|ref|ZP_07246225.1| replication-associated recombination protein A [Escherichia coli MS
           146-1]
 gi|300300278|gb|EFJ56663.1| replication-associated recombination protein A [Escherichia coli MS
           185-1]
 gi|300306961|gb|EFJ61481.1| replication-associated recombination protein A [Escherichia coli MS
           200-1]
 gi|300318326|gb|EFJ68110.1| replication-associated recombination protein A [Escherichia coli MS
           175-1]
 gi|300359650|gb|EFJ75520.1| replication-associated recombination protein A [Escherichia coli MS
           198-1]
 gi|300405012|gb|EFJ88550.1| replication-associated recombination protein A [Escherichia coli MS
           84-1]
 gi|300409623|gb|EFJ93161.1| replication-associated recombination protein A [Escherichia coli MS
           45-1]
 gi|300450862|gb|EFK14482.1| replication-associated recombination protein A [Escherichia coli MS
           116-1]
 gi|300462473|gb|EFK25966.1| replication-associated recombination protein A [Escherichia coli MS
           187-1]
 gi|300523831|gb|EFK44900.1| replication-associated recombination protein A [Escherichia coli MS
           119-7]
 gi|300842340|gb|EFK70100.1| replication-associated recombination protein A [Escherichia coli MS
           124-1]
 gi|301075440|gb|EFK90246.1| replication-associated recombination protein A [Escherichia coli MS
           146-1]
 gi|315257932|gb|EFU37900.1| replication-associated recombination protein A [Escherichia coli MS
           85-1]
 gi|315291251|gb|EFU50611.1| replication-associated recombination protein A [Escherichia coli MS
           153-1]
 gi|315296140|gb|EFU55449.1| replication-associated recombination protein A [Escherichia coli MS
           16-3]
 gi|323190714|gb|EFZ75983.1| ATPase family associated with various cellular activities family
           protein [Escherichia coli RN587/1]
 gi|324009813|gb|EGB79032.1| replication-associated recombination protein A [Escherichia coli MS
           57-2]
 gi|324012982|gb|EGB82201.1| replication-associated recombination protein A [Escherichia coli MS
           60-1]
 gi|324019017|gb|EGB88236.1| replication-associated recombination protein A [Escherichia coli MS
           117-3]
          Length = 428

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 73/326 (22%), Positives = 115/326 (35%), Gaps = 50/326 (15%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  L ++ GQ    +  K    A +A    L  ++  GPPG GKTTLA+V+AR    +
Sbjct: 1   MRPENLAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIARYANAD 58

Query: 82  FRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
               S        I +A + A    N   R +LF+DE+HR +   ++   P +ED  +  
Sbjct: 59  VERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 118

Query: 137 M--VGEGPSARSVKINLSRFTLIAATT-----RVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           +    E PS       LSR  +    +        +LT  ++D+                
Sbjct: 119 IGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDK---------------- 162

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
               RG     + + DE    IA    G  R A   L  + D AEV  +     +     
Sbjct: 163 ---TRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKPELLT 219

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
            +         ++ D  Y               + ISA     R +  D    +  +   
Sbjct: 220 EIAGERSARFDNKGDRFY---------------DLISALHKSVRGSAPDAALYWYARIIT 264

Query: 310 IQRTPR--GRLLMPIAWQHLGIDIPH 333
               P    R  + IA + +G   P 
Sbjct: 265 AGGDPLYVARRCLAIASEDVGNADPR 290


>gi|238784518|ref|ZP_04628526.1| Replication-associated recombination protein A [Yersinia bercovieri
           ATCC 43970]
 gi|238714581|gb|EEQ06585.1| Replication-associated recombination protein A [Yersinia bercovieri
           ATCC 43970]
          Length = 444

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 70/337 (20%), Positives = 117/337 (34%), Gaps = 42/337 (12%)

Query: 8   LSRNVSQED--ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           +S + SQ +     + +RP TL+++ GQ    +  K    A  A    L  ++  GPPG 
Sbjct: 1   MSLDFSQNEFQPLAARMRPLTLDQYIGQQHLLAAGKPLPRAIVAGQ--LHSMILWGPPGT 58

Query: 66  GKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GKTTLA+++ R    +    S        I +A + A    +   R +LF+DE+HR +  
Sbjct: 59  GKTTLAEIIGRYGQADVERISAVTSGIKEIREAIERARQNRDAGRRTILFVDEVHRFNKS 118

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++   P +ED  +  +    E PS       LSR  +    +        + D      
Sbjct: 119 QQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLTAADIEKVID------ 172

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
                      +  QRG     + + DE    ++    G  R A   L  + D AE+   
Sbjct: 173 --------QAMSDSQRGYGGQNIKLPDETRRMMSELVGGDARRALNSLEMMADMAEIDAN 224

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
                       +         ++ D  Y               + IS      R +  D
Sbjct: 225 GVRVLTPDLLKEVSGERSARFDNKGDRYY---------------DLISVVHKSIRGSAPD 269

Query: 299 LIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
               +  +       P    R L+ IA + +G   P 
Sbjct: 270 AALYWYARIITAGGDPLYVARRLLAIASEDVGNADPR 306


>gi|50121569|ref|YP_050736.1| recombination factor protein RarA [Pectobacterium atrosepticum
           SCRI1043]
 gi|49612095|emb|CAG75545.1| putative ATPase [Pectobacterium atrosepticum SCRI1043]
          Length = 447

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 72/326 (22%), Positives = 113/326 (34%), Gaps = 40/326 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP TL ++ GQ       K    A +A    L  ++  GPPG GKTTLA+++  
Sbjct: 15  PLAARMRPATLAQYIGQQHLLGAGKPLPRAIEAGQ--LHSMILWGPPGTGKTTLAELIGH 72

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
               +    S        I +A + A    N   R +LF+DE+HR +   ++   P +ED
Sbjct: 73  YGQADVERISAVTSGIKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED 132

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             +  +    E PS       LSR        RV LL   + +     +     + E   
Sbjct: 133 GTITFIGATTENPSFELNSALLSR-------ARVYLLKALMAEDIEQVLLQAMSDSE--- 182

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
               RG     + +  E    +A    G  R A   L  + D AE+          A   
Sbjct: 183 ----RGYGGLNIVLPAETGRMLAELVNGDARRALNSLEMMADMAEIDAQGMRILTPALLN 238

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
            +         ++ D  Y               + ISA     R +  D    +  +   
Sbjct: 239 EIAGERSARFDNKGDRYY---------------DLISALHKSVRGSAPDAALYWYARIIT 283

Query: 310 IQRTPR--GRLLMPIAWQHLGIDIPH 333
               P    R L+ IA + +G   P 
Sbjct: 284 AGGDPLYVARRLLAIASEDVGNADPR 309


>gi|190891389|ref|YP_001977931.1| ATPase [Rhizobium etli CIAT 652]
 gi|190696668|gb|ACE90753.1| putative ATPase protein [Rhizobium etli CIAT 652]
          Length = 438

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 81/344 (23%), Positives = 130/344 (37%), Gaps = 55/344 (15%)

Query: 4   REGLLSRNVSQE----DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
              L + +V +E          LRP+TL E TGQ        V     +  + +L  ++F
Sbjct: 2   SNDLFAPSVPEEVAARRPLADRLRPKTLAEVTGQEHLTGEDGVLKRMIE--SGSLGSMIF 59

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEI 114
            GPPG GKTT+A++++ E G+ F   S        + K  + A L      + +LF+DEI
Sbjct: 60  WGPPGTGKTTVARLLSGEAGLAFEQISAIFSGVADLKKVFETARLRRMDGRQTLLFVDEI 119

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++   P MED  + L+    E PS       LSR  ++   +           
Sbjct: 120 HRFNRAQQDSFLPVMEDGTVILVGATTENPSFELNAALLSRSRVLTFKS----------- 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
                     ++ + L+ +++R      +        E A  S    R+A    R V   
Sbjct: 169 ----------HDEQSLEELLKRA---EAIEQKPLPLTEEARASLI--RMADGDGRAVLTL 213

Query: 233 AEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVG-IETISAGLSE 291
           AE         E+  AA    + D  G      R +   A  +     G    ISA    
Sbjct: 214 AE---------EVWRAAREGESFDTEGLT----RIVQRRAPVYDKAQDGHYNLISALHKS 260

Query: 292 PRDAIEDLIEPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
            R +  D    Y+ +       P   GR L+ +A + +G+  P 
Sbjct: 261 VRGSDPDAALYYLARMFDAGEDPLYLGRRLVRMAVEDIGLADPQ 304


>gi|60681434|ref|YP_211578.1| recombination factor protein RarA [Bacteroides fragilis NCTC 9343]
 gi|60492868|emb|CAH07643.1| putative AAA family ATPase protein [Bacteroides fragilis NCTC 9343]
          Length = 423

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 76/330 (23%), Positives = 125/330 (37%), Gaps = 53/330 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP+TL+++ GQ        +  +   A    +   +  GPPG+GKTTLAQ++A 
Sbjct: 3   PLAERLRPKTLDDYIGQKHLVGPGAILRKMIDA--GRISSFILWGPPGVGKTTLAQIIAN 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAM 129
           +L   F + S  V +   D+  ++   +          +LFIDEIHR S   ++ L  A+
Sbjct: 61  KLETPFYTLSA-VTSGVKDVREVIDRAKSNKFFTQSSPILFIDEIHRFSKSQQDSLLGAV 119

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E   + L+    E PS   ++  LSR  L    +        L  R              
Sbjct: 120 EHGTVTLIGATTENPSFEVIRPLLSRCQLYTLKSLEKEDLLELLQR-------------A 166

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           + T V    K   + + +  A  +   S G  R    +L  V + +E      IT ++  
Sbjct: 167 ITTDVV--LKERKIELKETGA--MLRFSGGDARKLLNILELVVE-SETEETVIITDDLVT 221

Query: 248 AALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
             L +   A DK G    D+                   ISA +   R +  D    ++ 
Sbjct: 222 ERLQQNPLAYDKDGEMHYDI-------------------ISAFIKSIRGSDPDGAIYWLA 262

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +       P    R L+  A + +G+  P+
Sbjct: 263 RMVEGGEDPAFIARRLVISAAEDIGLANPN 292


>gi|189466213|ref|ZP_03014998.1| hypothetical protein BACINT_02583 [Bacteroides intestinalis DSM
           17393]
 gi|189434477|gb|EDV03462.1| hypothetical protein BACINT_02583 [Bacteroides intestinalis DSM
           17393]
          Length = 424

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 81/336 (24%), Positives = 127/336 (37%), Gaps = 65/336 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP+TL+E+ GQ        +  +   A    +   +  GPPG+GKTTLAQ++A 
Sbjct: 3   PLAERLRPKTLDEYIGQKHLVGPGAILRKMIDA--GRISSFILWGPPGVGKTTLAQIIAN 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAM 129
           +L   F + S  V +   D+  ++   +          +LFIDEIHR S   ++ L  A+
Sbjct: 61  KLETPFYTLSA-VTSGVKDVREVIERAKSNRFFSQGSPILFIDEIHRFSKSQQDSLLGAV 119

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E   + L+    E PS   ++  LSR  L    +                      E ED
Sbjct: 120 EQGTVTLIGATTENPSFEVIRPLLSRCQLYVLKS---------------------LEKED 158

Query: 188 LKTIVQRG------AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           L  ++QR        K   + + +  A  +   S G  R    +L  V   +E      I
Sbjct: 159 LMELLQRAVTTDHILKERKIELKETTA--MLRYSGGDARKLLNILDLVV-SSEANDPVVI 215

Query: 242 TREIADAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           T EI    L +   A DK G    D+                   ISA +   R +  D 
Sbjct: 216 TDEIVTERLQQNPLAYDKDGEMHYDI-------------------ISAFIKSIRGSDPDG 256

Query: 300 IEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
              ++ +       P    R L+  A + +G+  P+
Sbjct: 257 AVYWLARMVEAGEDPAFIARRLVISASEDIGLANPN 292


>gi|226355347|ref|YP_002785087.1| recombination factor protein RarA [Deinococcus deserti VCD115]
 gi|226317337|gb|ACO45333.1| putative DNA-dependent ATPase [Deinococcus deserti VCD115]
          Length = 451

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 83/333 (24%), Positives = 126/333 (37%), Gaps = 64/333 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRPRT+ E  GQ       +        ++  L  ++  GPPG+GKTTLA++VA 
Sbjct: 26  PLAERLRPRTVAEVVGQTHLLGPGRPLTR--VLQSGRLGSLILWGPPGVGKTTLARLVAG 83

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130
           E+G +F + S  V A   D+   +T  E       R +LF+DEIHR +   ++ L P +E
Sbjct: 84  EVGAHFIALSA-VSAGVKDVREAVTEAERLRARGTRTILFLDEIHRFNKAQQDALLPHVE 142

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
              L L+    E PS        SR   +                            ED+
Sbjct: 143 SGLLTLIGATTENPSFEVNPALRSRARTLVLEA---------------------LTQEDI 181

Query: 189 KTIVQRGA----KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           K +++R       L G++V  EA   +A  + G  R A   L      A       +T E
Sbjct: 182 KGLLERALSDERGLPGVSVEPEALDLLARLADGDARRALSTLEVAATLA-----DPVTPE 236

Query: 245 IADAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
               A  R   A+DK G D  +L                   ISA     R +  D    
Sbjct: 237 AVTEAFGRHLPAMDKNGEDFYNL-------------------ISALHKSVRGSHVDASLY 277

Query: 303 YMIQQ--GFIQRTPRGRLLMPIAWQHLGIDIPH 333
           ++ +   G        R ++ +A + +G+  P 
Sbjct: 278 WLARMIEGGADTGYVARRVVRMASEDIGLADPQ 310


>gi|307322100|ref|ZP_07601476.1| AAA ATPase central domain protein [Sinorhizobium meliloti AK83]
 gi|306892282|gb|EFN23092.1| AAA ATPase central domain protein [Sinorhizobium meliloti AK83]
          Length = 436

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 76/336 (22%), Positives = 120/336 (35%), Gaps = 55/336 (16%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
             ++        LRPRTL E TGQ        V        + +L  ++F GPPG GKTT
Sbjct: 11  PEMASARPLADRLRPRTLAEVTGQEHLTGPDGVLTRMI--ASGSLGSMIFWGPPGTGKTT 68

Query: 70  LAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           +A++++ E G+ F   S        + K  + A        + +LF+DEIHR +   ++ 
Sbjct: 69  VARLLSGEAGLAFEQISAIFSGVADLKKVFESARARRMSGRQTLLFVDEIHRFNRAQQDS 128

Query: 125 LYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             P MED  + L+    E PS       LSR                        +    
Sbjct: 129 FLPVMEDGTVILVGATTENPSFELNAALLSR---------------------ARVLTFKP 167

Query: 183 YEIEDLKTIVQR--GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           ++   L+ +++R   A+   L + DEA   +   + G  R    L   V   A       
Sbjct: 168 HDEASLEELLKRAEAAEGKPLPLDDEARASLIRMADGDGRAVLTLAEEVWRAAR------ 221

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVG-IETISAGLSEPRDAIEDL 299
                          D  G  +     +   A  +  G  G    ISA     R +  D 
Sbjct: 222 ----------RDEIFDSAGLQE----IVQRRAPVYDKGQDGHYNLISALHKSVRGSDPDA 267

Query: 300 IEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
              Y+ +       P   GR L+ +A + +G+  P 
Sbjct: 268 ALYYLCRMFDAGEDPLYIGRRLVRMAVEDIGLADPQ 303


>gi|296327395|ref|ZP_06869944.1| AAA family ATPase [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
 gi|296155510|gb|EFG96278.1| AAA family ATPase [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
          Length = 407

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 69/339 (20%), Positives = 118/339 (34%), Gaps = 58/339 (17%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            L  +N    +     LRP++L++F GQ +      V           L + +F GPPG 
Sbjct: 2   NLFQKNYKNVEPLAYKLRPKSLDDFVGQEKLLGKDGVITRLIL--NSTLSNSIFYGPPGC 59

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLS 118
           GK++L ++++  L  NF   +    A   D+  ++            R +LF+DEIHR +
Sbjct: 60  GKSSLGEIISNTLDCNFEKLNA-TTASVSDIRNIVETARRNIELYNKRTILFLDEIHRFN 118

Query: 119 IIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
              ++ L    ED  L L+    E P        LSR                      +
Sbjct: 119 KNQQDALLSYTEDGTLTLIGATTENPYYNINNALLSRV---------------------M 157

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
                    ED+  ++ +G     + + D+    I   S+G  RIA   +    +     
Sbjct: 158 VFEFKALTNEDILKLIDKGLNFLNICMGDKIKEIIVDISQGDSRIALNYVEMYNNI---- 213

Query: 237 HAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAI 296
           H++    EI      R        D+ D+                   ISA +   R + 
Sbjct: 214 HSQMSEDEIFSIFKERQVSFDKKQDKYDM-------------------ISAFIKSIRGSD 254

Query: 297 EDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            D    ++ +       P+   R L   A + +G+  P 
Sbjct: 255 PDAAVYWLARLLDGGEDPKYMARRLFIEASEDIGMANPE 293


>gi|262196587|ref|YP_003267796.1| ATPase AAA [Haliangium ochraceum DSM 14365]
 gi|262079934|gb|ACY15903.1| AAA ATPase central domain protein [Haliangium ochraceum DSM 14365]
          Length = 463

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 83/343 (24%), Positives = 126/343 (36%), Gaps = 36/343 (10%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD     +            +RP++L+EF GQ       K+   A      AL  ++  G
Sbjct: 1   MDLFRASADRRRIGQPLAERMRPKSLQEFVGQNHLLGPRKLL--ARLGPGAALPSLILWG 58

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEI 114
           PPG GKTTLA ++A   G    + S  V A   ++  L++   DR        VLFIDEI
Sbjct: 59  PPGTGKTTLAHILATRAGSRLAAISA-VTAGVREMRQLVSEAGDRRDQFGSRTVLFIDEI 117

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR S   ++ L P +E   + L+    E PS       LSR  ++            L  
Sbjct: 118 HRFSKAQQDALLPHVEAGTVTLIGATTENPSFHVNAALLSRCRVLRLGALSDEELGALAR 177

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R                +  +RG     ++V+DE   ++  +S G  R     L      
Sbjct: 178 R--------------ALSDRERGLGRAAVSVSDEVLTDLVAQSGGDARRMLNALEVAVSL 223

Query: 233 AEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEP 292
                 +    + A  AL R AI +    Q  L Y      +FG        +SA +   
Sbjct: 224 VRGGEGEGEDEDEAPRALGREAI-EEALQQKTLLYDKAGDEHFG-------VVSAFIKSM 275

Query: 293 RDAIEDLIEPYMIQQGFIQRTPRG--RLLMPIAWQHLGIDIPH 333
           R +  D    +M +       P    R ++  A + +G   P 
Sbjct: 276 RGSDPDAAAYWMTRMLEAGEDPLFVLRRMVVFASEDIGNADPQ 318


>gi|126724895|ref|ZP_01740738.1| ATPase, AAA family protein [Rhodobacterales bacterium HTCC2150]
 gi|126706059|gb|EBA05149.1| ATPase, AAA family protein [Rhodobacterales bacterium HTCC2150]
          Length = 438

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 76/350 (21%), Positives = 133/350 (38%), Gaps = 66/350 (18%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHV 57
           + + E   S + +        LRP+ + E  GQ         L V +EA     ++L  +
Sbjct: 4   LFEHEKDESSDSNSNRPLADKLRPKQISEVIGQAHVLGPEAPLGVMLEA-----KSLSSL 58

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFI 111
           +F GPPG+GKTT+A+++A  + + F   S  + +   DL  +              +LF+
Sbjct: 59  IFWGPPGVGKTTIARLLADHVDLAFVQISA-IFSGVADLKKVFQAATIRHQNGQGTLLFV 117

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DEIHR +   ++   P ME+  + L+    E PS       LSR  ++            
Sbjct: 118 DEIHRFNKAQQDGFLPYMENGTILLVGATTENPSFELNAALLSRSQVLVL---------- 167

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG--LAVTDEAACEIAMRSRGTPRIAGRLLR 227
                          + DL+ + QR  KL    L +T+++   +   + G  R    L+ 
Sbjct: 168 -----------ERLSLIDLEFLAQRAEKLLEKKLPLTNDSRDALLEMADGDGRTLLNLIE 216

Query: 228 RVRDFAEVAHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETI 285
           +V   +      ++ R+     L+R A   DK G +  +L                   I
Sbjct: 217 QV---SAWKLNASLDRDALAKRLMRRASKYDKNGEEHYNL-------------------I 254

Query: 286 SAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           SA     R +  D    +  +       PR   R +  +A + +G+  P 
Sbjct: 255 SALHKSVRGSDPDAALYWFARMLNGGEDPRFLARRITRMAVEDIGLADPQ 304


>gi|77462287|ref|YP_351791.1| recombination factor protein RarA [Rhodobacter sphaeroides 2.4.1]
 gi|77386705|gb|ABA77890.1| Recombination protein MgsA [Rhodobacter sphaeroides 2.4.1]
          Length = 437

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 83/349 (23%), Positives = 128/349 (36%), Gaps = 65/349 (18%)

Query: 1   MMDREGLLSRNVSQEDAD---ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           + DRE        Q DA       LRP++L E  GQ +  S        A   + +L  +
Sbjct: 4   LFDRE----PAPPQPDAPRPLADRLRPKSLAEVIGQGKVLSPDGPL--GAMLVSGSLSSL 57

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFID 112
           +  GPPG+GKTT+A+++A+E  + F   S      P + K  + A L        +LF+D
Sbjct: 58  ILWGPPGVGKTTIARLLAKETDLAFVQISAIFTGVPDLRKVFEAAKLRRANGQGTLLFVD 117

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           EIHR +   ++   P MED  + L+    E PS       +SR  +I             
Sbjct: 118 EIHRFNKAQQDGFLPHMEDGTILLVGATTENPSFELNAALMSRAQVIVL----------- 166

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKL--TGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            DR           + DL+ + QR        L +   A   +   + G  R    LL  
Sbjct: 167 -DR---------LSLADLERLAQRAEHETGRALPLDGPAREALLEMADGDGR---ALLNL 213

Query: 229 VRDFAEVAHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETIS 286
           V           + R+     L+R A   DK G +  +L                   IS
Sbjct: 214 VEQVMAWKVKGPLDRDQLATRLMRRAAKYDKSGEEHYNL-------------------IS 254

Query: 287 AGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           A     R +  D    +  +       PR   R +  +A + +G+  P 
Sbjct: 255 ALHKSVRGSDPDAALYWFARMLEGGEDPRFLARRITRMAVEDIGLADPQ 303


>gi|258647387|ref|ZP_05734856.1| ATPase, AAA family [Prevotella tannerae ATCC 51259]
 gi|260852753|gb|EEX72622.1| ATPase, AAA family [Prevotella tannerae ATCC 51259]
          Length = 422

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 70/328 (21%), Positives = 119/328 (36%), Gaps = 49/328 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP +L+++ GQ        V      A    +   +  GPPG+GKTTLA++VA 
Sbjct: 3   PLAERLRPTSLDDYVGQQHLVGPGAVLRNMIDA--GRITSFILWGPPGVGKTTLARIVAT 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAM 129
           +    F + S  V +   D+  ++              +LFIDEIHR S   ++ L  A+
Sbjct: 61  QFKAPFYTLSA-VNSGVKDVRDVIEKAAKNRFFSDQSPILFIDEIHRFSKSQQDSLLAAV 119

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E+  + L+    E PS   ++  LSR        +V +L +  +D     ++      E 
Sbjct: 120 ENGTITLIGATTENPSFEVIRPLLSRC-------QVYVLNSLTKDELLQLLQHALTTDEL 172

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           LK                    E     R +   A +LL  +    + A    I  + + 
Sbjct: 173 LKE-------------QQIELKETDALLRYSGGDARKLLNILDLVTQAASEGPIVIDNSL 219

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
                           D            GG +  + ISA +   R +  D    ++ + 
Sbjct: 220 VTARLQQHPA----HYD-----------KGGEMHYDIISAFIKSLRGSDPDAALYWLARM 264

Query: 308 GFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                 P+   R L+  A + +G+  P+
Sbjct: 265 IEGGEDPKFIARRLVISAAEDIGLANPN 292


>gi|282858602|ref|ZP_06267764.1| recombination factor protein RarA [Prevotella bivia JCVIHMP010]
 gi|282588606|gb|EFB93749.1| recombination factor protein RarA [Prevotella bivia JCVIHMP010]
          Length = 423

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 74/331 (22%), Positives = 124/331 (37%), Gaps = 52/331 (15%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +     +RPRTL+++ GQ        V     ++    +   +  GPPG+GKTTLAQ++A
Sbjct: 2   EPLAERMRPRTLDQYIGQEHLVGKDAVLRRMIESGH--ISSFILWGPPGVGKTTLAQIIA 59

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPA 128
            +L   F + S  V +   D+  ++   +          +LFIDEIHR S   ++ L  A
Sbjct: 60  HKLETPFYTLSA-VTSGVKDVREVIEKAKSNRFFSANSPILFIDEIHRFSKSQQDSLLGA 118

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           +E   + L+    E PS   ++  LSR  L    +        L  R             
Sbjct: 119 VEKGIVTLIGATTENPSFEVIRPLLSRCQLYTLKSLEQKDLLALLQR------------- 165

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
            +   ++   K   + +T+  A      S G  R    +L  +           IT  + 
Sbjct: 166 AITEDIE--LKKLKIKLTETKAL--LRYSGGDARKLLNILDLIVSATLEEEKVDITDNLV 221

Query: 247 DAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +  L +   A DK G    D+                   ISA +   R +  D    +M
Sbjct: 222 EERLQQNPLAYDKDGEMHYDI-------------------ISAFIKSIRGSDPDAAIYWM 262

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +       P+   R L+  A + +G+  P+
Sbjct: 263 ARMIEGGEDPQFIARRLVISASEDIGLANPN 293


>gi|289434794|ref|YP_003464666.1| ATPase, AAA family [Listeria seeligeri serovar 1/2b str. SLCC3954]
 gi|289171038|emb|CBH27580.1| ATPase, AAA family [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 427

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 72/322 (22%), Positives = 133/322 (41%), Gaps = 37/322 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP++L+E  GQ       K+     KA+   L  ++  GPPG+GKT++A  +A 
Sbjct: 5   PLAYRMRPKSLDEIVGQTHLVGKDKIIYRMVKAKQ--LSSMILYGPPGIGKTSIASAIAG 62

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR+ +     K   ++ A    +    +L +DE+HRL    ++ L P +E   + 
Sbjct: 63  STKYAFRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQDFLLPLLESGAI- 121

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           +++G   S   + IN +    I + T++  L         + +      ++      +RG
Sbjct: 122 ILIGATTSNPYIAINPA----IRSRTQIFELKP-------LTVEDIMTTMDRALADKERG 170

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT--ITREIADAALLRL 253
                + + + A    A  S G  R A   L      +EV       IT E+A+  L + 
Sbjct: 171 LGNYHVEIDEFAKKHFATASNGDVRSALNALELAVISSEVDKNGITQITLEVAEECLQKK 230

Query: 254 --AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
             A DK G    D+  L+   ++  G            S+   A+  +    +I+ G + 
Sbjct: 231 SLAHDKDGDAHYDV--LSAFQKSVRG------------SDANAALHYMGR--LIEAGDLV 274

Query: 312 RTPRGRLLMPIAWQHLGIDIPH 333
              R R+L+ +A++ +G+  P 
Sbjct: 275 SISR-RMLV-MAYEDIGLANPQ 294


>gi|87301395|ref|ZP_01084236.1| ATPase [Synechococcus sp. WH 5701]
 gi|87284363|gb|EAQ76316.1| ATPase [Synechococcus sp. WH 5701]
          Length = 742

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 79/328 (24%), Positives = 132/328 (40%), Gaps = 43/328 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRPR+LEEF GQ E     ++   A   RA+ + +++  GPPG+GKTTLA+++A 
Sbjct: 18  PLADRLRPRSLEEFVGQAEILGPGRLLRRAI--RADRVGNLILHGPPGVGKTTLARIIAS 75

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAM 129
               +F S +  V+A   DL   +            R +LFIDE+HR ++  ++ L P +
Sbjct: 76  STRAHFTSLNA-VLAGVKDLRVEVEAARQRLERHGLRTLLFIDEVHRFNVAQQDALLPWV 134

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E+  + L+    E P     K  +SR  L            PL+ R    +      +E 
Sbjct: 135 ENGTVTLIGATTENPYFEVNKALVSRSRLFRL--------QPLEPRDLRVL------LER 180

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
                +RG     + +T EAA  +   + G  R     L    + +    +  I  ++  
Sbjct: 181 ALADGERGYGGRPVELTPEAADHLLDVAGGDARSLLNALELAVESSAADASGVIRIDLEI 240

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           A        +    Q  + Y          G    +TISA +   R +  D    ++ + 
Sbjct: 241 A--------EQSIQQRAVLY-------DKQGDAHFDTISAFIKSLRGSDPDAALFWLARM 285

Query: 308 GFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                 PR   R ++  A + +G+  P 
Sbjct: 286 VEAGENPRFIFRRMLISAGEDIGLADPQ 313


>gi|126461163|ref|YP_001042277.1| recombination factor protein RarA [Rhodobacter sphaeroides ATCC
           17029]
 gi|221638141|ref|YP_002524403.1| recombination factor protein RarA [Rhodobacter sphaeroides KD131]
 gi|126102827|gb|ABN75505.1| Recombination protein MgsA [Rhodobacter sphaeroides ATCC 17029]
 gi|221158922|gb|ACL99901.1| Recombination protein MgsA [Rhodobacter sphaeroides KD131]
          Length = 437

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 81/349 (23%), Positives = 126/349 (36%), Gaps = 65/349 (18%)

Query: 1   MMDREGLLSRNVSQEDAD---ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           + DRE        Q DA       LRP++L E  GQ +  S        A   + +L  +
Sbjct: 4   LFDRE----PAPPQPDAPRPLADRLRPKSLAEVIGQGKVLSPDGPL--GAMLASGSLSSL 57

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFID 112
           +  GPPG+GKTT+A+++A+E  + F   S      P + K  + A L        +LF+D
Sbjct: 58  ILWGPPGVGKTTIARLLAKETDLAFVQISAIFTGVPDLRKVFEAAKLRRANGQGTLLFVD 117

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           EIHR +   ++   P MED  + L+    E PS       +SR  +I             
Sbjct: 118 EIHRFNKAQQDGFLPHMEDGTILLVGATTENPSFELNAALMSRAQVIVL----------- 166

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKL--TGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
                         + DL+ + QR        L +   A   +   + G  R    LL  
Sbjct: 167 ----------ERLSLADLERLAQRAEHETGRALPLDGPAREALLEMADGDGR---ALLNL 213

Query: 229 VRDFAEVAHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETIS 286
           V           + R+     L+R A   DK G +  +L                   IS
Sbjct: 214 VEQVMAWKVKGPLDRDQLATRLMRRAAKYDKSGEEHYNL-------------------IS 254

Query: 287 AGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           A     R +  D    +  +       PR   R +  +A + +G+  P 
Sbjct: 255 ALHKSVRGSDPDAALYWFARMLEGGEDPRFLARRITRMAVEDIGLADPQ 303


>gi|301156050|emb|CBW15521.1| recombination protein [Haemophilus parainfluenzae T3T1]
          Length = 446

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 71/332 (21%), Positives = 116/332 (34%), Gaps = 53/332 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP  LE++ GQ       K   +A +A    +  ++  GPPG GKTTLA+++A 
Sbjct: 15  PLAARMRPTNLEQYYGQTHLIGEGKPLRKAIQAGH--VHSMILWGPPGTGKTTLAEIIAN 72

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAME 130
            +       S  V +   ++   +   +         +LF+DE+HR +   ++   P +E
Sbjct: 73  RINAEVERISA-VTSGVKEIRESIERAKQNRLADRQTILFVDEVHRFNKSQQDAFLPHIE 131

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           D  +  +    E PS       LSR        RV LL +         ++    + E  
Sbjct: 132 DGTIIFIGATTENPSFELNNALLSR-------ARVYLLKSLTIAEIEQVLKQAISDPE-- 182

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
                RG     L + +     +A    G  R+A   L  + D A  A            
Sbjct: 183 -----RGLGKERLVLEENLLQVLAEYVNGDARLALNCLELMVDMASEAENGK-------- 229

Query: 249 ALLRLAIDKMGFDQLDLRYLTMI-----ARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
                        +LD   L  +     AR    G    + ISA     R +  D    +
Sbjct: 230 -------------KLDRTLLKEVLGERQARFDKQGDRFYDLISALHKSIRGSAADAALYW 276

Query: 304 MIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
             +       P    R L+ IA + +G   P 
Sbjct: 277 YARIITAGGDPLYVARRLLAIASEDVGNADPR 308


>gi|265763268|ref|ZP_06091836.1| recombination factor protein RarA [Bacteroides sp. 2_1_16]
 gi|263255876|gb|EEZ27222.1| recombination factor protein RarA [Bacteroides sp. 2_1_16]
          Length = 423

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 76/330 (23%), Positives = 124/330 (37%), Gaps = 53/330 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP+TL+++ GQ        +  +   A    +   +  GPPG+GKTTLAQ++A 
Sbjct: 3   PLAERLRPKTLDDYIGQKHLVGPGAILRKMIDA--GRISSFILWGPPGVGKTTLAQIIAN 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAM 129
           +L   F + S  V +   D+  ++   +          +LFIDEIHR S   ++ L  A+
Sbjct: 61  KLETPFYTLSA-VTSGVKDVREVIDRAKSNKFFTQSSPILFIDEIHRFSKSQQDSLLGAV 119

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E   + L+    E PS   ++  LSR  L    +        L  R              
Sbjct: 120 EHGTVTLIGATTENPSFEVIRPLLSRCQLYTLKSLEKEDLLELLQR------------AI 167

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
              IV    K   + + +  A  +   S G  R    +L  V + +E      IT ++  
Sbjct: 168 TTDIV---LKERKIELKETGA--MLRFSGGDARKLLNILELVVE-SETEETVIITDDLVT 221

Query: 248 AALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
             L +   A DK G    D+                   ISA +   R +  D    ++ 
Sbjct: 222 ERLQQNPLAYDKDGEMHYDI-------------------ISAFIKSIRGSDPDGAIYWLA 262

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +       P    R L+  A + +G+  P+
Sbjct: 263 RMVEGGEDPAFIARRLVISAAEDIGLANPN 292


>gi|322832175|ref|YP_004212202.1| AAA ATPase [Rahnella sp. Y9602]
 gi|321167376|gb|ADW73075.1| AAA ATPase central domain protein [Rahnella sp. Y9602]
          Length = 447

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 72/337 (21%), Positives = 118/337 (35%), Gaps = 42/337 (12%)

Query: 8   LSRNVSQED--ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           LS + SQ +     + +RP TL E+ GQ    +  K    A +A    L  ++  GPPG 
Sbjct: 4   LSLDFSQNEFQPLAARMRPVTLAEYIGQQHLLAPGKPLPRAIEAGQ--LHSMILWGPPGT 61

Query: 66  GKTTLAQVVARELGVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GKTTLA+++ R    +    S        I +A + A    +   R +LF+DE+HR +  
Sbjct: 62  GKTTLAELIGRYANADVERISAVTSGVKDIREAIERARQNRDAGRRTILFVDEVHRFNKS 121

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++   P +ED  +  +    E PS       LSR  +    +        + D      
Sbjct: 122 QQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLTAEDIEKVID------ 175

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
                      +  +RG     + V  E    ++    G  R A   +  + D AE+   
Sbjct: 176 --------QALSNSERGYANEKIRVPPETRRMLSELVNGDARRALNSIEMMADMAEIDAN 227

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
              T        +         ++ D  Y               + ISA     R +  D
Sbjct: 228 GYRTLTPELLTEIAGERSARFDNKGDRFY---------------DLISALHKSVRGSSPD 272

Query: 299 LIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
               +  +       P    R L+ IA + +G   P 
Sbjct: 273 AALYWYARIITAGGDPLYVARRLLAIASEDVGNADPR 309


>gi|315619204|gb|EFU99783.1| ATPase family associated with various cellular activities (AAA)
           family protein [Escherichia coli 3431]
          Length = 428

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 73/326 (22%), Positives = 115/326 (35%), Gaps = 50/326 (15%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  L ++ GQ    +  K    A +A    L  ++  GPPG GKTTLA+V+AR    +
Sbjct: 1   MRPENLAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIARYANAD 58

Query: 82  FRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
               S        I +A + A    N   R +LF+DE+HR +   ++   P +ED  +  
Sbjct: 59  VERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 118

Query: 137 M--VGEGPSARSVKINLSRFTLIAATT-----RVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           +    E PS       LSR  +    +        +LT  ++D+                
Sbjct: 119 IGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDK---------------- 162

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
               RG     + + DE    IA    G  R A   L  + D AEV  +     +     
Sbjct: 163 ---TRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKPELLT 219

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
            +         ++ D  Y               + ISA     R +  D    +  +   
Sbjct: 220 EIAGERSARFDNKGDRFY---------------DLISALHKSVRGSAPDAALYWYARIIT 264

Query: 310 IQRTPR--GRLLMPIAWQHLGIDIPH 333
               P    R  + IA + +G   P 
Sbjct: 265 AGGDPLYVARRCLAIASEDVGNADPR 290


>gi|192292006|ref|YP_001992611.1| recombination factor protein RarA [Rhodopseudomonas palustris
           TIE-1]
 gi|192285755|gb|ACF02136.1| AAA ATPase central domain protein [Rhodopseudomonas palustris
           TIE-1]
          Length = 443

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 79/344 (22%), Positives = 121/344 (35%), Gaps = 56/344 (16%)

Query: 4   REGLLSRNVSQEDADIS---LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
            E L +    + DA       LRPR+L +  GQ              + R   L  ++F 
Sbjct: 9   SENLFAAAGLERDAPRPLPDRLRPRSLADVVGQDHILGPDGALTRMLQTR--TLGSLVFW 66

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIH 115
           GPPG GKTT+A+++A    + F   S        + K  D A     +    +LF+DE+H
Sbjct: 67  GPPGTGKTTVARLLADATELQFEQISAVFSGVADLKKVFDAARARREMGKGTLLFVDEVH 126

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P MED  + ++    E PS       LSR                   R
Sbjct: 127 RFNKAQQDSFLPVMEDGTVVMVGATTENPSFELNAALLSR------------------AR 168

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
             I   L+   IE L +  +  A+   L + DEA   +A  + G  R +  L   V   A
Sbjct: 169 VLIFKPLDAAAIEQLFSKAE-AAEGRKLPLDDEARAVLARMADGDGRASLTLAEEVWRSA 227

Query: 234 EVAHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
                +          L R A   DK      +L                   ISA    
Sbjct: 228 --REGEVFNAAQLQEILQRRAPIYDKSADGHYNL-------------------ISALHKS 266

Query: 292 PRDAIEDLIEPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
            R +  D    Y+ +       P    R ++ +A + +G+  P 
Sbjct: 267 VRGSDPDAALYYLCRMLDAGEDPLFLARRVVRMAVEDVGMADPQ 310


>gi|19703642|ref|NP_603204.1| recombination factor protein RarA [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|19713756|gb|AAL94503.1| ATPase associated with chromosome architecture/replication
           [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
          Length = 407

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 69/339 (20%), Positives = 118/339 (34%), Gaps = 58/339 (17%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            L  +N    +     LRP++L++F GQ +      V           L + +F GPPG 
Sbjct: 2   NLFQKNYKNVEPLAYKLRPKSLDDFVGQEKLLGKDGVITRLIL--NSTLSNSIFYGPPGC 59

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLS 118
           GK++L ++++  L  NF   +    A   D+  ++            R +LF+DEIHR +
Sbjct: 60  GKSSLGEIISNTLDCNFEKLNA-TTASVSDIRNVVETARRNIELYNKRTILFLDEIHRFN 118

Query: 119 IIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
              ++ L    ED  L L+    E P        LSR                      +
Sbjct: 119 KNQQDALLSYTEDGTLTLIGATTENPYYNINNALLSRV---------------------M 157

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
                    ED+  ++ +G     + + D+    I   S+G  RIA   +    +     
Sbjct: 158 VFEFKALTNEDILKLIDKGLNFLNICMGDKIKEIIVDISQGDSRIALNYVEMYNNI---- 213

Query: 237 HAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAI 296
           H++    EI      R        D+ D+                   ISA +   R + 
Sbjct: 214 HSQMSEDEIFSIFKERQVSFDKKQDKYDM-------------------ISAFIKSIRGSD 254

Query: 297 EDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            D    ++ +       P+   R L   A + +G+  P 
Sbjct: 255 PDAAVYWLARLLDGGEDPKYMARRLFIEASEDIGMANPE 293


>gi|167957055|ref|ZP_02544129.1| recombination factor protein RarA [candidate division TM7
           single-cell isolate TM7c]
          Length = 400

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 78/326 (23%), Positives = 133/326 (40%), Gaps = 59/326 (18%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
               L+RP+ +++  GQ    S  K+  +  K +      ++  GPPG GKTTLA+++A+
Sbjct: 5   PLAELMRPQKIKDIIGQRHLLSEGKILYKIIKQKE--PVSLILWGPPGSGKTTLARIIAK 62

Query: 77  ELGVNFRSTSGPVIAKAG-----DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
           E   NF   S     K       ++A    NL+ R VLF+DEIHR S + ++   P +E 
Sbjct: 63  ETEANFMELSAVTSGKKEINNIIEIARQNWNLQLRTVLFVDEIHRFSKVQQDAFLPHIES 122

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             + L+    E PS   +   LSR  ++           PL+D+             D++
Sbjct: 123 GLITLIGATTENPSFEIITPLLSRVKVMTL--------KPLEDK-------------DIQ 161

Query: 190 TIVQRGAKLTGLAV--TDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            I+ +  +    +   T+E+   +A  S G  R+A   L  V       +   IT +  +
Sbjct: 162 QILTKAIEKLAKSKLVTNESIEYLAHISSGDARVALGNLELVLGI----NKGKITPDTIN 217

Query: 248 AALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
            AL ++    DK G    D                   TISA +   R +  +    Y+ 
Sbjct: 218 IALQKIPPTYDKNGNYHYD-------------------TISAFIKSMRGSDVEATLYYLA 258

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGI 329
           +       P+   R ++  A + +G+
Sbjct: 259 RMINAGEDPKFIARRMIIFASEDIGL 284


>gi|22126674|ref|NP_670097.1| recombination factor protein RarA [Yersinia pestis KIM 10]
 gi|45441042|ref|NP_992581.1| recombination factor protein RarA [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51595743|ref|YP_069934.1| recombination factor protein RarA [Yersinia pseudotuberculosis IP
           32953]
 gi|108806665|ref|YP_650581.1| recombination factor protein RarA [Yersinia pestis Antiqua]
 gi|108812763|ref|YP_648530.1| recombination factor protein RarA [Yersinia pestis Nepal516]
 gi|145599589|ref|YP_001163665.1| recombination factor protein RarA [Yersinia pestis Pestoides F]
 gi|149366635|ref|ZP_01888669.1| putative ATPase protein [Yersinia pestis CA88-4125]
 gi|153948669|ref|YP_001401559.1| recombination factor protein RarA [Yersinia pseudotuberculosis IP
           31758]
 gi|218928526|ref|YP_002346401.1| recombination factor protein RarA [Yersinia pestis CO92]
 gi|229841347|ref|ZP_04461506.1| recombination protein [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229843452|ref|ZP_04463598.1| recombination protein [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229895824|ref|ZP_04510994.1| recombination protein [Yersinia pestis Pestoides A]
 gi|229903172|ref|ZP_04518285.1| recombination protein [Yersinia pestis Nepal516]
 gi|21959690|gb|AAM86348.1|AE013883_2 putative polynucleotide enzyme [Yersinia pestis KIM 10]
 gi|45435901|gb|AAS61458.1| putative ATPase protein [Yersinia pestis biovar Microtus str.
           91001]
 gi|51589025|emb|CAH20643.1| putative polynucleotide ATPase protein [Yersinia pseudotuberculosis
           IP 32953]
 gi|108776411|gb|ABG18930.1| Recombination protein MgsA [Yersinia pestis Nepal516]
 gi|108778578|gb|ABG12636.1| Recombination protein MgsA [Yersinia pestis Antiqua]
 gi|115347137|emb|CAL20030.1| putative ATPase protein [Yersinia pestis CO92]
 gi|145211285|gb|ABP40692.1| Recombination protein MgsA [Yersinia pestis Pestoides F]
 gi|149291009|gb|EDM41084.1| putative ATPase protein [Yersinia pestis CA88-4125]
 gi|152960164|gb|ABS47625.1| replication/recombination-associated protein RarA [Yersinia
           pseudotuberculosis IP 31758]
 gi|229678942|gb|EEO75045.1| recombination protein [Yersinia pestis Nepal516]
 gi|229689799|gb|EEO81860.1| recombination protein [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229697713|gb|EEO87760.1| recombination protein [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229700747|gb|EEO88776.1| recombination protein [Yersinia pestis Pestoides A]
 gi|320015765|gb|ADV99336.1| recombination protein [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 447

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 70/337 (20%), Positives = 117/337 (34%), Gaps = 42/337 (12%)

Query: 8   LSRNVSQED--ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           +S + SQ +     + +RP TL+++ GQ    +  K    A  A    L  ++  GPPG 
Sbjct: 4   MSLDFSQNEFQPLAARMRPLTLDQYIGQQHLLAPGKPLPRAIVAGQ--LHSMILWGPPGT 61

Query: 66  GKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GKTTLA+++ R    +    S        I +A + A    +   R +LF+DE+HR +  
Sbjct: 62  GKTTLAEIIGRYGQADVERISAVTSGIKEIREAIERARQNRDAGRRTILFVDEVHRFNKS 121

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++   P +ED  +  +    E PS       LSR  +             + D      
Sbjct: 122 QQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKALTAADIEKVID------ 175

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
                      +   RG     + + DE    ++    G  R A   L  + D AE+  +
Sbjct: 176 --------QAMSDSSRGYGGQNILLPDETRRMMSELVGGDARRALNSLEMMADMAEIDAS 227

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
                       +         ++ D  Y               + ISA     R +  D
Sbjct: 228 GVRVLTPELLKEVSGERSARFDNKGDRYY---------------DLISAVHKSIRGSAPD 272

Query: 299 LIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
               +  +       P    R L+ IA + +G   P 
Sbjct: 273 AALYWYARIITAGGDPLYVARRLLAIASEDVGNADPR 309


>gi|307946316|ref|ZP_07661651.1| replication-associated recombination protein A [Roseibium sp.
           TrichSKD4]
 gi|307769980|gb|EFO29206.1| replication-associated recombination protein A [Roseibium sp.
           TrichSKD4]
          Length = 437

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 73/344 (21%), Positives = 115/344 (33%), Gaps = 53/344 (15%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D       +          LRP+ L++  GQ              K R+  L  ++F 
Sbjct: 1   MSDLFAASGLDKDVNRPLADRLRPQKLDDVVGQDHLLGPDGTLSRMLKTRS--LGSLIFW 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIH 115
           GPPG GKTT+A+++A E  + F   S        + K  + A          +LF+DEIH
Sbjct: 59  GPPGTGKTTIARLLADETDLAFEQISAIFSGVADLKKVFETARARRMGGRGTLLFVDEIH 118

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P MED  + L+    E PS       LSR  ++                
Sbjct: 119 RFNRAQQDSFLPVMEDGTITLVGATTENPSFELNAAVLSRSHVM---------------- 162

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLT--GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
                  +   IE +  ++ R  +     L + +EA   +   + G  R A  L   V  
Sbjct: 163 -----TFHSLNIESIGKLLARAEEEEGKPLPLDEEARGVLIRMADGDGRSALTLAEDVWR 217

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
            A          +    A     I +      D            G       ISA    
Sbjct: 218 AA--------DEDEVFDAERLQGIVQRRAPIYD-----------KGQDGHYNLISALHKS 258

Query: 292 PRDAIEDLIEPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
            R +  D    +  +       P    R L+ +A + +G+  PH
Sbjct: 259 VRGSDPDASLYWFCRMLDGGEDPMYLARRLIRMAVEDIGLADPH 302


>gi|221135429|ref|ZP_03561732.1| recombination factor protein RarA [Glaciecola sp. HTCC2999]
          Length = 440

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 63/327 (19%), Positives = 112/327 (34%), Gaps = 46/327 (14%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +   + +RP  L  + GQ       +   ++ +     +  +L  GPPG GKTTLAQ++A
Sbjct: 7   EPLAARMRPTDLASYIGQSHILGPNQPLSQSLENGH--IHSMLLWGPPGTGKTTLAQIIA 64

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           + +  N    S  V +   D+   +         ++F+DE+HR +   ++   P +E   
Sbjct: 65  KHIDANLIVLSA-VTSGVKDIRDAMAMTHPGVVTIVFVDEVHRFNKSQQDAFLPFIESGA 123

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           +  +    E PS       LSR  +         +   L D   I I       ++    
Sbjct: 124 ITFIGATTENPSFSCNNALLSRCRV--------YVLQALTDADIIQICQQALANDEWLCA 175

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI---ADA 248
                    +++ D+A   +A  S G  R A   L      ++ A       +      A
Sbjct: 176 C-------AVSIDDDALMTLASLSSGDARRALLYLELAAQLSQSADGSHRVTQQHVAQAA 228

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
                  D+ G    D+                   +SA     R +  D    +  +  
Sbjct: 229 GQKVAQFDQQGDHYYDV-------------------LSAFHKSVRGSSSDGALYWFARYL 269

Query: 309 FIQRTPRG--RLLMPIAWQHLGIDIPH 333
                P    R L+ IA + +G+  P 
Sbjct: 270 TANSDPVPIMRRLLAIASEDIGLADPR 296


>gi|253566840|ref|ZP_04844292.1| recombination factor protein RarA [Bacteroides sp. 3_2_5]
 gi|251944403|gb|EES84892.1| recombination factor protein RarA [Bacteroides sp. 3_2_5]
 gi|301162894|emb|CBW22441.1| putative AAA family ATPase protein [Bacteroides fragilis 638R]
          Length = 423

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 76/330 (23%), Positives = 125/330 (37%), Gaps = 53/330 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP+TL+++ GQ        +  +   A    +   +  GPPG+GKTTLAQ++A 
Sbjct: 3   PLAERLRPKTLDDYIGQKHLVGPGAILRKMIDA--GRISSFILWGPPGVGKTTLAQIIAN 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAM 129
           +L   F + S  V +   D+  ++   +          +LFIDEIHR S   ++ L  A+
Sbjct: 61  KLETPFYTLSA-VTSGVKDVREVIDRAKSNKFFTQSSPILFIDEIHRFSKSQQDSLLGAV 119

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E   + L+    E PS   ++  LSR  L    +        L  R              
Sbjct: 120 EHGTVTLIGATTENPSFEVIRPLLSRCQLYTLKSLEKEDLLELLQR-------------A 166

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           + T V    K   + + +  A  +   S G  R    +L  V + +E      IT ++  
Sbjct: 167 ITTDVV--LKERKIELKETGA--MLRFSGGDARKLLNILELVVE-SETEETVIITDDLVT 221

Query: 248 AALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
             L +   A DK G    D+                   ISA +   R +  D    ++ 
Sbjct: 222 ERLQQNPLAYDKDGEMHYDI-------------------ISAFIKSIRGSDPDGAIYWLA 262

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +       P    R L+  A + +G+  P+
Sbjct: 263 RMVEGGEDPAFIARRLVISAAEDIGLANPN 292


>gi|162419653|ref|YP_001606119.1| recombination factor protein RarA [Yersinia pestis Angola]
 gi|165924481|ref|ZP_02220313.1| replication/recombination-associated protein RarA [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165938969|ref|ZP_02227522.1| replication/recombination-associated protein RarA [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|166009749|ref|ZP_02230647.1| replication/recombination-associated protein RarA [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166211508|ref|ZP_02237543.1| replication/recombination-associated protein RarA [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|167399951|ref|ZP_02305469.1| replication/recombination-associated protein RarA [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167419620|ref|ZP_02311373.1| replication/recombination-associated protein RarA [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167423984|ref|ZP_02315737.1| replication/recombination-associated protein RarA [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|167470160|ref|ZP_02334864.1| replication/recombination-associated protein RarA [Yersinia pestis
           FV-1]
 gi|170024908|ref|YP_001721413.1| recombination factor protein RarA [Yersinia pseudotuberculosis
           YPIII]
 gi|186894820|ref|YP_001871932.1| recombination factor protein RarA [Yersinia pseudotuberculosis
           PB1/+]
 gi|270486967|ref|ZP_06204041.1| replication-associated recombination protein A [Yersinia pestis KIM
           D27]
 gi|294503368|ref|YP_003567430.1| replication/recombination-associated protein RarA [Yersinia pestis
           Z176003]
 gi|162352468|gb|ABX86416.1| replication/recombination-associated protein RarA [Yersinia pestis
           Angola]
 gi|165913116|gb|EDR31740.1| replication/recombination-associated protein RarA [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|165923541|gb|EDR40673.1| replication/recombination-associated protein RarA [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165991145|gb|EDR43446.1| replication/recombination-associated protein RarA [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166207279|gb|EDR51759.1| replication/recombination-associated protein RarA [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|166962361|gb|EDR58382.1| replication/recombination-associated protein RarA [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167050659|gb|EDR62067.1| replication/recombination-associated protein RarA [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167056833|gb|EDR66596.1| replication/recombination-associated protein RarA [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|169751442|gb|ACA68960.1| AAA ATPase central domain protein [Yersinia pseudotuberculosis
           YPIII]
 gi|186697846|gb|ACC88475.1| AAA ATPase central domain protein [Yersinia pseudotuberculosis
           PB1/+]
 gi|262361408|gb|ACY58129.1| replication/recombination-associated protein RarA [Yersinia pestis
           D106004]
 gi|262365055|gb|ACY61612.1| replication/recombination-associated protein RarA [Yersinia pestis
           D182038]
 gi|270335471|gb|EFA46248.1| replication-associated recombination protein A [Yersinia pestis KIM
           D27]
 gi|294353827|gb|ADE64168.1| replication/recombination-associated protein RarA [Yersinia pestis
           Z176003]
          Length = 444

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 70/337 (20%), Positives = 117/337 (34%), Gaps = 42/337 (12%)

Query: 8   LSRNVSQED--ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           +S + SQ +     + +RP TL+++ GQ    +  K    A  A    L  ++  GPPG 
Sbjct: 1   MSLDFSQNEFQPLAARMRPLTLDQYIGQQHLLAPGKPLPRAIVAGQ--LHSMILWGPPGT 58

Query: 66  GKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GKTTLA+++ R    +    S        I +A + A    +   R +LF+DE+HR +  
Sbjct: 59  GKTTLAEIIGRYGQADVERISAVTSGIKEIREAIERARQNRDAGRRTILFVDEVHRFNKS 118

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++   P +ED  +  +    E PS       LSR  +             + D      
Sbjct: 119 QQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKALTAADIEKVID------ 172

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
                      +   RG     + + DE    ++    G  R A   L  + D AE+  +
Sbjct: 173 --------QAMSDSSRGYGGQNILLPDETRRMMSELVGGDARRALNSLEMMADMAEIDAS 224

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
                       +         ++ D  Y               + ISA     R +  D
Sbjct: 225 GVRVLTPELLKEVSGERSARFDNKGDRYY---------------DLISAVHKSIRGSAPD 269

Query: 299 LIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
               +  +       P    R L+ IA + +G   P 
Sbjct: 270 AALYWYARIITAGGDPLYVARRLLAIASEDVGNADPR 306


>gi|284007597|emb|CBA73185.1| recombination factor protein RarA [Arsenophonus nasoniae]
          Length = 455

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 76/335 (22%), Positives = 121/335 (36%), Gaps = 42/335 (12%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
            S N  Q     + +RP  LE++ GQ    +N K    A   RA  L  ++  GP G GK
Sbjct: 16  FSSNEFQ--PLAAKMRPINLEQYIGQQHLLANNKPLARAI--RAGQLHSMILWGPAGTGK 71

Query: 68  TTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           TTLA+++           S        I ++ ++A     L  R +LF+DE+HR +   +
Sbjct: 72  TTLAEIIGHYADAAIEKISAVTSGIKEIRESIEIARQNRQLGRRTILFVDEVHRFNKSQQ 131

Query: 123 EILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +   P +ED  +  +    E PS       LSR        RV LL +   +   + ++ 
Sbjct: 132 DAFLPHIEDGTVTFIGATTENPSFELNSALLSR-------ARVYLLKSLANEEIAMVLQQ 184

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
              +        QRG     + + D+    IA    G  R A  LL  + D AE+     
Sbjct: 185 AMADS-------QRGYGGQKIILPDDTRDMIAQLVNGDARRALNLLEMMVDMAEIDDKDQ 237

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
               +     +         ++ D  Y               + ISA     R +  D  
Sbjct: 238 RILAVNLLKDVSGERSARFDNKGDRYY---------------DLISALHKSIRGSAPDAA 282

Query: 301 EPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
             +  +       P    R L+ IA + +G   P 
Sbjct: 283 LYWYARIITAGGDPLYVARRLLAIASEDIGNADPR 317


>gi|323185143|gb|EFZ70508.1| ATPase family associated with various cellular activities family
           protein [Escherichia coli 1357]
          Length = 428

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 73/326 (22%), Positives = 115/326 (35%), Gaps = 50/326 (15%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  L ++ GQ    +  K    A +A    L  ++  GPPG GKTTLA+V+AR    +
Sbjct: 1   MRPENLAQYIGQQHLLAAGKPLPHAIEAGH--LHSMILWGPPGTGKTTLAEVIARYANAD 58

Query: 82  FRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
               S        I +A + A    N   R +LF+DE+HR +   ++   P +ED  +  
Sbjct: 59  VERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 118

Query: 137 M--VGEGPSARSVKINLSRFTLIAATT-----RVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           +    E PS       LSR  +    +        +LT  ++D+                
Sbjct: 119 IGATTENPSFELNSALLSRARVYLLKSLGTEDIEQVLTQAMEDK---------------- 162

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
               RG     + + DE    IA    G  R A   L  + D AEV  +     +     
Sbjct: 163 ---TRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVNDSGKRVLKPELLT 219

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
            +         ++ D  Y               + ISA     R +  D    +  +   
Sbjct: 220 EIAGERSARFDNKGDRFY---------------DLISALHKSVRGSAPDAALYWYARIIT 264

Query: 310 IQRTPR--GRLLMPIAWQHLGIDIPH 333
               P    R  + IA + +G   P 
Sbjct: 265 AGGDPLYVARRCLAIASEDVGNADPR 290


>gi|319407398|emb|CBI81049.1| ATPase, AAA family [Bartonella sp. 1-1C]
          Length = 439

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 76/333 (22%), Positives = 116/333 (34%), Gaps = 53/333 (15%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           V+Q       +RPR+L E  GQ                 + +   ++F GPPG GKTT+A
Sbjct: 14  VNQNRPLAERMRPRSLHEMVGQNHLIGAEGFLSRMV--ASGSFSSMIFWGPPGTGKTTVA 71

Query: 72  QVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           +++A E    F   S        + K  ++A        + +LFIDEIHR +   ++   
Sbjct: 72  RLLALETNFAFEQVSAIFTGISELKKIFEVARSRLMSGCQTLLFIDEIHRFNRSQQDSFL 131

Query: 127 PAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           P MED  + L+    E PS       LSR                        +    ++
Sbjct: 132 PFMEDGTIILVGATTENPSFELNAALLSR---------------------ARVLTFRAHD 170

Query: 185 IEDLKTIVQRGAKLT--GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            E L  +++R  K+    L + D A   +   S G  R A  L   +   A+        
Sbjct: 171 NESLDILLKRAEKVEGKSLPLDDHAREILIRISGGDARAALTLAEDIWRAAQ-------- 222

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            E         AI +      D            G       ISA     R +  D    
Sbjct: 223 PEEVFNTETLQAIIQRRIPIYD-----------KGRDSHYNLISALHKSVRGSDPDAALY 271

Query: 303 YMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           Y+ +       P   GR L+ IA + +G+  P 
Sbjct: 272 YLARMFDAGEDPLYIGRRLVRIAIEDIGLADPQ 304


>gi|306840328|ref|ZP_07473100.1| recombination factor protein RarA [Brucella sp. BO2]
 gi|306289727|gb|EFM60916.1| recombination factor protein RarA [Brucella sp. BO2]
          Length = 437

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 80/348 (22%), Positives = 130/348 (37%), Gaps = 60/348 (17%)

Query: 1   MMDREGLL-SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M D        N  +       LRP+ L E TGQ        V        + +L  ++F
Sbjct: 1   MSDLFSTAADPNADRNRPLADRLRPKHLSEVTGQEHLTGPEGVLTRMI--ASGSLGSMIF 58

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDE 113
            GPPG GKTT+A+++A E  + F   S  + +   DL  +            + +LF+DE
Sbjct: 59  WGPPGTGKTTVARLLAGETDLAFEQISA-IFSGVADLKRVFEAARARRMSGRQTLLFVDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++   P MED  + L+    E PS       LSR                  
Sbjct: 118 IHRFNRAQQDSFLPVMEDGTVILIGATTENPSFELNAALLSR------------------ 159

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTG--LAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
                 +  + ++ E + T+++R  +  G  L + DEA   +   + G  R A  L   V
Sbjct: 160 ---ARVLTFHPHDSESIATLLKRAEEQEGQALPLDDEARASLIRMADGDGRAALTLAEEV 216

Query: 230 RDFAEVAHAKTITREIADAALLRLAIDKMG--FDQLDLRYLTMIARNFGGGPVGIETISA 287
              A          E+ DAA L+  + +    +D+    +  +              ISA
Sbjct: 217 WRAA-------RPGEVFDAAKLQDVVQRRAPVYDKSQDGHYNL--------------ISA 255

Query: 288 GLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                R +  D    Y+ +       P   GR L+ +A + +G+  P 
Sbjct: 256 LHKSVRGSDPDAALYYLSRMFDAGEDPLYIGRRLVRMAVEDIGLADPQ 303


>gi|255692090|ref|ZP_05415765.1| replication-associated recombination protein A [Bacteroides
           finegoldii DSM 17565]
 gi|260622242|gb|EEX45113.1| replication-associated recombination protein A [Bacteroides
           finegoldii DSM 17565]
          Length = 425

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 76/330 (23%), Positives = 124/330 (37%), Gaps = 53/330 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP+TL+E+ GQ        +  +   A    +   +  GPPG+GKTTLAQ++A 
Sbjct: 3   PLAERLRPKTLDEYIGQKHLVGPGAILRKMIDA--GRISSFILWGPPGVGKTTLAQIIAN 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAM 129
           +L   F + S  V +   D+  ++   +          +LFIDEIHR S   ++ L  A+
Sbjct: 61  KLETPFFTLSA-VTSGVKDVREVIDRAKSNRFFSQSSPILFIDEIHRFSKSQQDSLLGAV 119

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E+  + L+    E PS   ++  LSR  L    +        L  R      +       
Sbjct: 120 ENGTVTLIGATTENPSFEVIRPLLSRCQLYVLKSLEKEDLLELLQRAITTDTV------- 172

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
                    K   + + +  A  +   S G  R    +L  V + +E      IT E+  
Sbjct: 173 --------LKERKIELKETTA--MLRFSGGDARKLLNILELVVE-SEAEDTVVITDEMVT 221

Query: 248 AALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
             L +   A DK G    D+                   ISA +   R +  D    ++ 
Sbjct: 222 ERLQQNPLAYDKDGEMHYDI-------------------ISAFIKSIRGSDPDGAIYWLA 262

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +       P    R L+  A + +G+  P+
Sbjct: 263 RMVEGGEDPAFIARRLVISASEDIGLANPN 292


>gi|148240504|ref|YP_001225891.1| fused recombination factor protein RarA/unknown domain-containing
           protein [Synechococcus sp. WH 7803]
 gi|147849043|emb|CAK24594.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [Synechococcus sp. WH 7803]
          Length = 737

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 76/343 (22%), Positives = 130/343 (37%), Gaps = 44/343 (12%)

Query: 3   DREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           D        + +  A ++  LRPR L+EF GQ    +  ++   A  A  + + +++  G
Sbjct: 8   DLFSFQRETLRRRQAPLADRLRPRNLDEFVGQGAILAEGRLLRRAIAA--DRVGNLILHG 65

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEI 114
           PPG+GKTTLA+++A     +F S +  V+A   DL A ++    R        +LFIDE+
Sbjct: 66  PPGVGKTTLARIIANHTRAHFSSLNA-VLAGVKDLRAEVSEAGQRLERHGLRTILFIDEV 124

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++ L P +E+  L L+    E P     K  +SR  L           + L +
Sbjct: 125 HRFNSAQQDALLPWVENGTLTLIGATTENPYFEVNKALVSRSRLFRLQALTPGDLSKLLN 184

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
                               +RG     + +  EAA  +   + G  R     L    D 
Sbjct: 185 --------------SALKDPERGYGDRKIKIEPEAAAHLVDVASGDARSLLNALELAVDS 230

Query: 233 AEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEP 292
                   +  ++  A        +    Q  + Y          G    +TISA +   
Sbjct: 231 TPADENGLVRIDLGIA--------EESIQQRAVLY-------DKQGDAHFDTISAFIKSI 275

Query: 293 RDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           R +  D    ++ +       PR   R ++  A + +G+  P 
Sbjct: 276 RGSDPDAALFWLARMVEAGENPRFIFRRMLISAGEDVGLADPQ 318


>gi|53713173|ref|YP_099165.1| recombination factor protein RarA [Bacteroides fragilis YCH46]
 gi|52216038|dbj|BAD48631.1| putative AAA family ATPase [Bacteroides fragilis YCH46]
          Length = 423

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 76/330 (23%), Positives = 125/330 (37%), Gaps = 53/330 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP+TL+++ GQ        +  +   A    +   +  GPPG+GKTTLAQ++A 
Sbjct: 3   PLAERLRPKTLDDYIGQKHLVGPGAILRKMIDA--GRISSFILWGPPGVGKTTLAQIIAN 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAM 129
           +L   F + S  V +   D+  ++   +          +LFIDEIHR S   ++ L  A+
Sbjct: 61  KLETPFYTLSA-VTSGVKDVREVIDRAKSNKFFTQSSPILFIDEIHRFSKSQQDSLLGAV 119

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E   + L+    E PS   ++  LSR  L    +        L  R              
Sbjct: 120 EHGTVTLIGATTENPSFEVIRPLLSRCQLYTLKSLEKEDLLELLQR-------------A 166

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           + T V    K   + + +  A  +   S G  R    +L  V + +E      IT ++  
Sbjct: 167 ITTDVV--LKERKMELKETGA--MLRFSGGDARKLLNILELVVE-SETEETVIITDDLVT 221

Query: 248 AALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
             L +   A DK G    D+                   ISA +   R +  D    ++ 
Sbjct: 222 ERLQQNPLAYDKDGEMHYDI-------------------ISAFIKSIRGSDPDGAIYWLA 262

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +       P    R L+  A + +G+  P+
Sbjct: 263 RMVEGGEDPAFIARRLVISAAEDIGLANPN 292


>gi|116251573|ref|YP_767411.1| recombination factor protein RarA [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115256221|emb|CAK07302.1| putative ATPase AAA family protein [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 438

 Score =  150 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 79/336 (23%), Positives = 127/336 (37%), Gaps = 51/336 (15%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           +   V+        LRP+TL + TGQ        V     +  + +L  ++F GPPG GK
Sbjct: 10  VPEEVAARRPLADRLRPKTLADVTGQEHLTGEDGVLKRMIE--SGSLGSMIFWGPPGTGK 67

Query: 68  TTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           TT+A++++ E G+ F   S        + K  + A L      + +LF+DEIHR +   +
Sbjct: 68  TTVARLLSGEAGLAFEQISAIFSGVADLKKVFETARLRRMDGRQTLLFVDEIHRFNRAQQ 127

Query: 123 EILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +   P MED  + L+    E PS       LSR  ++   +                   
Sbjct: 128 DSFLPVMEDGTVILVGATTENPSFELNAALLSRARVLTFKS------------------- 168

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
             ++ E L+ +++R      +        E A  S    R+A    R V   AE      
Sbjct: 169 --HDEESLEELLKRA---EAIEQKSLPLTEDARASLI--RMADGDGRAVLTLAE------ 215

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVG-IETISAGLSEPRDAIEDL 299
              E+  AA    + D  G      R +   A  +     G    ISA     R +  D 
Sbjct: 216 ---EVWRAAREGESFDTEGLT----RIVQRRAPVYDKAQDGHYNLISALHKSVRGSDPDA 268

Query: 300 IEPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
              Y+ +       P   GR L+ +A + +G+  P 
Sbjct: 269 ALYYLARMFDAGEDPLYLGRRLVRMAVEDIGLADPQ 304


>gi|319404398|emb|CBI78001.1| ATPase, AAA family [Bartonella rochalimae ATCC BAA-1498]
          Length = 439

 Score =  150 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 76/333 (22%), Positives = 116/333 (34%), Gaps = 53/333 (15%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           V+Q       +RPR+L E  GQ                 + +   ++F GPPG GKTT+A
Sbjct: 14  VNQNRPLAEKMRPRSLHEVVGQNHLIGAEGFLSRMV--ASGSFSSMIFWGPPGTGKTTVA 71

Query: 72  QVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           +++A E    F   S        + K  ++A        + +LFIDEIHR +   ++   
Sbjct: 72  RLLALETNFAFEQVSAIFTGISELKKIFEVARARLMSGCQTLLFIDEIHRFNRSQQDSFL 131

Query: 127 PAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           P MED  + L+    E PS       LSR                        +    ++
Sbjct: 132 PFMEDGTIILVGATTENPSFELNAALLSR---------------------ARVLTFRAHD 170

Query: 185 IEDLKTIVQRGAKLT--GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
              L  +++R  K+    L + D A   +   S G  R A  L   +   A+        
Sbjct: 171 NASLDILLKRAEKVEGRSLPLDDHAREVLIRISDGDARAALTLAEDIWRAAQ-------- 222

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            E    A    AI +      D            G       ISA     R +  D    
Sbjct: 223 SEEVFNAETLQAIIQRRTPIYD-----------KGRDSHYNLISALHKSVRGSDPDAALY 271

Query: 303 YMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           Y+ +       P   GR L+ IA + +G+  P 
Sbjct: 272 YLARMFDAGEDPLYIGRRLVRIAIEDIGLADPQ 304


>gi|253688108|ref|YP_003017298.1| AAA ATPase central domain protein [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251754686|gb|ACT12762.1| AAA ATPase central domain protein [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 447

 Score =  150 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 67/326 (20%), Positives = 112/326 (34%), Gaps = 40/326 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP TL ++ GQ       K    A +A    L  ++  GPPG GKTTLA+++  
Sbjct: 15  PLAARMRPATLAQYIGQQHLLGAGKPLPRAIEAGQ--LHSMILWGPPGTGKTTLAELIGH 72

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
               +    S        I +A + A    N   R +LF+DE+HR +   ++   P +ED
Sbjct: 73  YGQADVERISAVTSGIKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED 132

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             +  +    E PS       LSR  +             +              ++ + 
Sbjct: 133 GTITFIGATTENPSFELNSALLSRARVYLLKALTAEDIEQV--------------LQQVM 178

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
           +  +RG     + +  + A  +A    G  R A   L  + D AE+          A   
Sbjct: 179 SDSERGYGGQNIVLPADTARMLAELVNGDARRALNSLEMMADMAEIDAQGMRVLTPALLN 238

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
            +         ++ D  Y               + ISA     R +  D    +  +   
Sbjct: 239 EIAGERSARFDNKGDRYY---------------DLISALHKSVRGSAPDAALYWYARIIT 283

Query: 310 IQRTPR--GRLLMPIAWQHLGIDIPH 333
               P    R L+ IA + +G   P 
Sbjct: 284 AGGDPLYVARRLLAIASEDVGNADPR 309


>gi|291458146|ref|ZP_06597536.1| ATPase, AAA family [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291419229|gb|EFE92948.1| ATPase, AAA family [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 430

 Score =  150 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 76/348 (21%), Positives = 124/348 (35%), Gaps = 52/348 (14%)

Query: 2   MDREGLLS-RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD    ++ +    E    + +RP  L+E  GQ E      +   A  A  + L  ++F 
Sbjct: 1   MDLFEYMAEKQKGAEAPLAARMRPENLDELVGQQEIAGKGHLLYRAIAA--DKLSSLIFY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDE 113
           GPPG GKTTLA+++AR     F   +    A   ++  ++   +        R +LF+DE
Sbjct: 59  GPPGTGKTTLARLIARTTKAEFCQLNA-TSAGKKEMEEIVERAKKNLGGYGKRTILFVDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++ L P +ED  L L+    E P        LSR  +       G     L 
Sbjct: 118 IHRFNKAQQDYLLPYVEDGSLILIGATTENPYFEVNSALLSRSRIFELKPLTGEEIRILL 177

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R                +  +RG     L + +EA   ++  + G  R A   L     
Sbjct: 178 KR--------------AVSDQRRGLGSFRLRIEEEALDFLSEAAGGDARAALNALELAAL 223

Query: 232 FAEVAHAK----TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISA 287
             E         T++          L  D+ G +  D                   TISA
Sbjct: 224 TTERGEDGWIDITLSVASECIQKRVLRYDRDGDEHYD-------------------TISA 264

Query: 288 GLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +   R +  D    Y+ +  +     +   R ++  A + +G   P 
Sbjct: 265 FIKSMRGSDPDAAVYYLARMLYAGEDIKFIARRIVICASEDVGNADPQ 312


>gi|254719264|ref|ZP_05181075.1| recombination factor protein RarA [Brucella sp. 83/13]
 gi|265984263|ref|ZP_06096998.1| recombination factor protein RarA [Brucella sp. 83/13]
 gi|306838015|ref|ZP_07470873.1| recombination factor protein RarA [Brucella sp. NF 2653]
 gi|264662855|gb|EEZ33116.1| recombination factor protein RarA [Brucella sp. 83/13]
 gi|306406939|gb|EFM63160.1| recombination factor protein RarA [Brucella sp. NF 2653]
          Length = 437

 Score =  150 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 80/348 (22%), Positives = 130/348 (37%), Gaps = 60/348 (17%)

Query: 1   MMDREGLL-SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M D        N  +       LRP+ L E TGQ        V        + +L  ++F
Sbjct: 1   MSDLFSTAADPNADRNRPLADRLRPKHLSEVTGQEHLTGPEGVLTRMI--ASGSLGSMIF 58

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDE 113
            GPPG GKTT+A+++A E  + F   S  + +   DL  +            + +LF+DE
Sbjct: 59  WGPPGTGKTTVARLLAGETDLAFEQISA-IFSGVADLKRVFEAARARRMSGRQTLLFVDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++   P MED  + L+    E PS       LSR                  
Sbjct: 118 IHRFNRAQQDSFLPVMEDGTVILIGATTENPSFELNAALLSR------------------ 159

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLT--GLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
                 +  + ++ E + T+++R  +    GL + DEA   +   + G  R A  L   V
Sbjct: 160 ---ARVLTFHPHDSESIATLLKRAEEQEGQGLPLDDEARASLIRMADGDGRAALTLAEEV 216

Query: 230 RDFAEVAHAKTITREIADAALLRLAIDKMG--FDQLDLRYLTMIARNFGGGPVGIETISA 287
              A          E+ DAA L+  + +    +D+    +  +              ISA
Sbjct: 217 WRAA-------RPGEVFDAAKLQDVVQRRAPVYDKSQDGHYNL--------------ISA 255

Query: 288 GLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                R +  D    Y+ +       P   GR L+ +A + +G+  P 
Sbjct: 256 LHKSVRGSDPDAALYYLSRMFDAGEDPLYIGRRLVRMAVEDIGLADPQ 303


>gi|293372974|ref|ZP_06619343.1| recombination factor protein RarA [Bacteroides ovatus SD CMC 3f]
 gi|299145353|ref|ZP_07038421.1| ATPase, AAA family [Bacteroides sp. 3_1_23]
 gi|292632042|gb|EFF50651.1| recombination factor protein RarA [Bacteroides ovatus SD CMC 3f]
 gi|298515844|gb|EFI39725.1| ATPase, AAA family [Bacteroides sp. 3_1_23]
          Length = 423

 Score =  150 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 75/330 (22%), Positives = 122/330 (36%), Gaps = 53/330 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP+TL+++ GQ        +  +   A    +   +  GPPG+GKTTLAQ++A 
Sbjct: 3   PLAERLRPKTLDDYIGQKHLVGPGAILRKMIDA--GRISSFILWGPPGVGKTTLAQIIAN 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAM 129
           +L   F + S  V +   D+  ++   +          +LFIDEIHR S   ++ L  A+
Sbjct: 61  KLETPFYTLSA-VTSGVKDVREVIERAKSNRFFSQSSPILFIDEIHRFSKSQQDSLLGAV 119

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E+  + L+    E PS   ++  LSR  L    +        L  R              
Sbjct: 120 ENGTVTLIGATTENPSFEVIRPLLSRCQLYVLKSLEKEDLLELLQR-------------- 165

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
               +   A L    +  +    +   S G  R    +L  V   +E      IT E+  
Sbjct: 166 ---AITTDAILKERKIELKETTAMLRFSGGDARKLLNILELVVQ-SETEETVVITDEMVT 221

Query: 248 AALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
             L +   A DK G    D+                   ISA +   R +  D    ++ 
Sbjct: 222 ERLQQNPLAYDKDGEMHYDI-------------------ISAFIKSIRGSDPDGAIYWLA 262

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +       P    R L+  A + +G+  P+
Sbjct: 263 RMVEGGEDPAFIARRLVISAAEDIGLANPN 292


>gi|197121182|ref|YP_002133133.1| recombination factor protein RarA [Anaeromyxobacter sp. K]
 gi|196171031|gb|ACG72004.1| AAA ATPase central domain protein [Anaeromyxobacter sp. K]
          Length = 437

 Score =  150 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 81/345 (23%), Positives = 123/345 (35%), Gaps = 51/345 (14%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD       +          +RPR LE+F GQ            + +A  + +  ++  G
Sbjct: 1   MDLFDRAVADDPSGKPLAERMRPRRLEDFAGQEHVLGPGTALRRSIEA--DQVPSLILWG 58

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEI 114
           PPG GKTTLA++VA+  G +F   S  V+    ++  ++            R +LF+DEI
Sbjct: 59  PPGTGKTTLARIVAQRTGADFVPFSA-VLGGVKEIREIVAAARDRRRMHRKRTILFVDEI 117

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++   P +ED  + L+    E PS       LSR  +             L D
Sbjct: 118 HRFTRAQQDAFLPHVEDGTITLIGATTENPSFEVNAALLSRCRVATLRALTEDEVAALLD 177

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R            E L   V         A+T EA   IA  S G  R A   L      
Sbjct: 178 R-------AVAAPEGLAGAV---------ALTPEARDTIARLSYGDARKALNALEVSAAA 221

Query: 233 AEVAHAKTITREIADAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
             +A    + +  A+ AL       DK G +                       +SA + 
Sbjct: 222 VRLAGRPAVEKADAEEALQARTVNYDKQGEEHY-------------------NVVSAFIK 262

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPRG--RLLMPIAWQHLGIDIPH 333
             R +  D    YM++       PR   R ++  A + +G   P 
Sbjct: 263 SLRGSDPDAAVYYMVRMLEAGEDPRFVLRRMVIFASEDVGNADPQ 307


>gi|260426610|ref|ZP_05780589.1| recombination factor protein RarA [Citreicella sp. SE45]
 gi|260421102|gb|EEX14353.1| recombination factor protein RarA [Citreicella sp. SE45]
          Length = 437

 Score =  150 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 78/347 (22%), Positives = 122/347 (35%), Gaps = 57/347 (16%)

Query: 1   MMDREGLLSRNVSQEDAD---ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M D          ++ A       LRPR L+E  GQ +               + AL  +
Sbjct: 1   MADLFDSPDATPPEDRAPRPLADRLRPRALDEVIGQRQLLGPDAPL--GIMLASGALSSL 58

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFID 112
           +  GPPG+GKTT+A+++A    ++F   S      P + K  + A          +LF+D
Sbjct: 59  VLWGPPGVGKTTIARLLADATDLHFVQISAIFTGVPELRKVFEAARHRRTNGQGTLLFVD 118

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           EIHR +   ++   P MED  + L+    E PS       LSR  ++             
Sbjct: 119 EIHRFNKAQQDGFLPHMEDGTILLVGATTENPSFELNAALLSRAQVLVL----------- 167

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIA--MRSRGTPRIAGRLLRR 228
                         + DL+ + QR  K  G A+  + A   A    + G  R A  L+ +
Sbjct: 168 ----------ERLSLADLERLAQRAEKELGRALPLDGAAREALLEMADGDGRAALNLIEQ 217

Query: 229 VRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAG 288
           V  +   A   T                     QL  R +   A+    G      ISA 
Sbjct: 218 VMAWKTDAKLDTA--------------------QLTRRLMRRAAQYDKSGDGHYNLISAL 257

Query: 289 LSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
               R +  D    +  +       PR   R +  +A + +G+  P 
Sbjct: 258 HKSVRGSDPDAALYWFARMLEAGEDPRFLARRITRMAVEDIGLADPQ 304


>gi|150006392|ref|YP_001301136.1| recombination factor protein RarA [Bacteroides vulgatus ATCC 8482]
 gi|149934816|gb|ABR41514.1| putative ATPase, AAA family [Bacteroides vulgatus ATCC 8482]
          Length = 425

 Score =  150 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 76/330 (23%), Positives = 120/330 (36%), Gaps = 52/330 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP+TL+++ GQ        V  +   A    +   +  GPPG+GKTTLAQ++A 
Sbjct: 4   PLAERLRPKTLDDYIGQKHLVGPGAVLRKMIDA--GRISSFILWGPPGVGKTTLAQIIAN 61

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAM 129
           +L   F + S  V +   D+  ++              +LFIDEIHR S   ++ L  A+
Sbjct: 62  KLETPFYTLSA-VTSGVKDVRDVIEKARSNRFFSQASPILFIDEIHRFSKSQQDSLLGAV 120

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E   + L+    E PS   ++  LSR  L    +        L                 
Sbjct: 121 ETGVVTLIGATTENPSFEVIRPLLSRCQLYVLKSLEKEDLLELLHN-------------A 167

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           +   V    K   + + +  A  +   S G  R    +L  V +    A    IT E   
Sbjct: 168 IAKDV--ILKEKKIELKETDA--MLRFSGGDARKLLNILELVVEADADAGPVVITDEKVT 223

Query: 248 AALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
             L +   A DK G    D+                   ISA +   R +  D    ++ 
Sbjct: 224 ERLQQNPLAYDKDGEMHYDI-------------------ISAFIKSIRGSDPDGALYWLA 264

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +       P    R L+  A + +G+  P+
Sbjct: 265 RMVEAGEDPAFIARRLVISAAEDIGLANPN 294


>gi|313680216|ref|YP_004057955.1| recombination protein mgsa [Oceanithermus profundus DSM 14977]
 gi|313152931|gb|ADR36782.1| Recombination protein MgsA [Oceanithermus profundus DSM 14977]
          Length = 435

 Score =  150 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 80/326 (24%), Positives = 116/326 (35%), Gaps = 51/326 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRPRTL+E  GQ       K            L  ++F GPPG GKTTLA+++A 
Sbjct: 9   PLAERLRPRTLDEVVGQEHLTGPGKPLR--VMLENGRLASMIFWGPPGTGKTTLARILAN 66

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130
            +   F + S  V A   ++   +   ++        VLF+DE+HR +   ++ L P +E
Sbjct: 67  GVDARFVAMSA-VSAGVKEVREAVKQAQEAVSAGRPTVLFLDEVHRFNKAQQDALLPHVE 125

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
              L L+    E PS        SR        RV +L    +D     +       E  
Sbjct: 126 SGLLTLIGATTENPSFEVNPALRSR-------ARVYVLKALGEDDLMRVLERALISSE-- 176

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
                    L      +EA   IA  + G  R A   L      A       +T + A  
Sbjct: 177 --------GLPEAEAEEEALRLIAAAAMGDARRALNALE----LAAELGGGRVTLDAARE 224

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL        G    D            GG    + ISA     R +  D    Y+ +  
Sbjct: 225 ALGA------GQPVFD-----------KGGEAFYDLISALHKSVRGSHVDAALYYLARML 267

Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIP 332
                P   GR L+ +A + +G+  P
Sbjct: 268 AGGVDPLYVGRRLVRMASEDVGLADP 293


>gi|329298237|ref|ZP_08255573.1| recombination factor protein RarA [Plautia stali symbiont]
          Length = 448

 Score =  150 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 73/341 (21%), Positives = 121/341 (35%), Gaps = 40/341 (11%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M    L     ++     + +RP TL+++ GQ    +  K    A +A    L  ++  G
Sbjct: 1   MSNLSLDFAPSNEFRPLAARIRPATLQQYIGQQHLLAAGKPLPRAIEAGQ--LHSMILWG 58

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHR 116
           PPG GKTTLA+++A     +    S        I +A + A     +  R +LF+DE+HR
Sbjct: 59  PPGTGKTTLAEIIAHYGKADVERISAVTSGVKEIREAIERARQNRQVGRRTILFVDEVHR 118

Query: 117 LSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRF 174
            +   ++   P +ED  +  +    E PS       LSR  +    +        + D  
Sbjct: 119 FNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLTSADIEQVLD-- 176

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
                              RG   + + + D     IA    G  R A   L  + D AE
Sbjct: 177 ------------QAMQDKTRGYGDSDILLPDNTRRMIAELVNGDARRALNTLEMMADMAE 224

Query: 235 VAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRD 294
           +       RE+    L  ++ ++              AR    G    + ISA     R 
Sbjct: 225 LNAQG--QRELTPQLLNEVSGERA-------------ARFDNKGDRFYDLISALHKSVRG 269

Query: 295 AIEDLIEPYMIQQ--GFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +  D    +  +       +    R L+ IA + +G   P 
Sbjct: 270 SAPDAALYWYARIITAGGDQLYVARRLLAIASEDVGNADPR 310


>gi|283768972|ref|ZP_06341878.1| recombination factor protein RarA [Bulleidia extructa W1219]
 gi|283104329|gb|EFC05706.1| recombination factor protein RarA [Bulleidia extructa W1219]
          Length = 441

 Score =  150 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 81/344 (23%), Positives = 128/344 (37%), Gaps = 52/344 (15%)

Query: 6   GLLSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
            L      + ++     +RP+TL+E  GQ    +  K+   A +A  + L  ++  GPPG
Sbjct: 2   NLFQEESDELKEPLALRMRPKTLDEVVGQTHILAKDKLLYRAIQA--DRLSSLILTGPPG 59

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRL 117
            GKT+LA VVA+    +F   +  V A   DL  ++ +         ++ +LFIDEIHR 
Sbjct: 60  TGKTSLAMVVAQSTKSHFEQVNATV-AGKKDLEKIVEDASVRKERYGEKTILFIDEIHRF 118

Query: 118 SIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
           +   ++ L P +E   L L+    E P     +  LSR ++      +      L  R  
Sbjct: 119 NKGQQDYLLPFVEAGLLVLIGATTENPYFEVNRALLSRSSVFQLKPLLKEDIVQLLKR-- 176

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR--DFA 233
                            ++G       V++E    +A  S G  R+A   L        A
Sbjct: 177 ------------ACGDSKKGMASFMPMVSEEVYDFLAEVSGGDARVALNALELAILTTGA 224

Query: 234 EVAHAKTITREIADAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
                + IT EI    + R     DK G +  D                   TISA +  
Sbjct: 225 NEEGYREITLEIVSECVQRKVLHYDKKGDNHYD-------------------TISAFIKS 265

Query: 292 PRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            R +  D    Y+ +        R   R +M  A + +G   P 
Sbjct: 266 MRGSDPDATIYYLARMLEAGEDERFIARRIMICASEDVGNADPR 309


>gi|237716254|ref|ZP_04546735.1| recombination factor protein RarA [Bacteroides sp. D1]
 gi|237721058|ref|ZP_04551539.1| recombination factor protein RarA [Bacteroides sp. 2_2_4]
 gi|262407859|ref|ZP_06084407.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294647656|ref|ZP_06725222.1| recombination factor protein RarA [Bacteroides ovatus SD CC 2a]
 gi|294807679|ref|ZP_06766472.1| recombination factor protein RarA [Bacteroides xylanisolvens SD CC
           1b]
 gi|298481000|ref|ZP_06999195.1| ATPase, AAA family [Bacteroides sp. D22]
 gi|229443901|gb|EEO49692.1| recombination factor protein RarA [Bacteroides sp. D1]
 gi|229449893|gb|EEO55684.1| recombination factor protein RarA [Bacteroides sp. 2_2_4]
 gi|262354667|gb|EEZ03759.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292637005|gb|EFF55457.1| recombination factor protein RarA [Bacteroides ovatus SD CC 2a]
 gi|294445115|gb|EFG13789.1| recombination factor protein RarA [Bacteroides xylanisolvens SD CC
           1b]
 gi|298273023|gb|EFI14589.1| ATPase, AAA family [Bacteroides sp. D22]
          Length = 423

 Score =  150 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 75/330 (22%), Positives = 122/330 (36%), Gaps = 53/330 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP+TL+++ GQ        +  +   A    +   +  GPPG+GKTTLAQ++A 
Sbjct: 3   PLAERLRPKTLDDYIGQKHLVGPGAILRKMIDA--GRISSFILWGPPGVGKTTLAQIIAN 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAM 129
           +L   F + S  V +   D+  ++   +          +LFIDEIHR S   ++ L  A+
Sbjct: 61  KLETPFYTLSA-VTSGVKDVREVIERAKSNRFFSQSSPILFIDEIHRFSKSQQDSLLGAV 119

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E+  + L+    E PS   ++  LSR  L    +        L  R              
Sbjct: 120 ENGTVTLIGATTENPSFEVIRPLLSRCQLYVLKSLEKEDLLELLQR-------------- 165

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
               +   A L    +  +    +   S G  R    +L  V   +E      IT E+  
Sbjct: 166 ---AITTDAVLKERKIELKETTAMLRFSGGDARKLLNILELVVQ-SETEETVVITDEMVT 221

Query: 248 AALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
             L +   A DK G    D+                   ISA +   R +  D    ++ 
Sbjct: 222 ERLQQNPLAYDKDGEMHYDI-------------------ISAFIKSIRGSDPDGAIYWLA 262

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +       P    R L+  A + +G+  P+
Sbjct: 263 RMVEGGEDPAFIARRLVISAAEDIGLANPN 292


>gi|228910235|ref|ZP_04074053.1| hypothetical protein bthur0013_43830 [Bacillus thuringiensis IBL
           200]
 gi|228849399|gb|EEM94235.1| hypothetical protein bthur0013_43830 [Bacillus thuringiensis IBL
           200]
          Length = 428

 Score =  150 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 78/327 (23%), Positives = 126/327 (38%), Gaps = 43/327 (13%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           +      +RP+ ++E  GQ       K+     +A       ++  GPPG GKT++A  +
Sbjct: 2   KQPLAHRMRPKNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           A   G  FR  +  V     D+  ++   +     VL +DE+HRL    ++ L P +E  
Sbjct: 60  AGSTGTPFRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESG 118

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
            L L+      P         SR        ++  L    +D   I ++    + E    
Sbjct: 119 LLTLIGATTSNPFHAINSAIRSRC-------QIFELHALTEDDILIGLKSALEDKE---- 167

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR--DFAEVAHAKTITREIADA 248
              +G     + VTDEA    A  S G  R A   L       F     A  IT EIA+ 
Sbjct: 168 ---KGLGKYAVTVTDEALHHFANASGGDMRSAYNALELAVLSSFTTDDQAAEITLEIAEE 224

Query: 249 ALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
            L + +   DK G    D+  L+   ++  G  V              A+  L    +I+
Sbjct: 225 CLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDV------------NAALHYLAR--LIE 268

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            G +Q    GR L+ +A++ +G+  P 
Sbjct: 269 AGDLQSI--GRRLLIMAYEDIGLASPQ 293


>gi|256845830|ref|ZP_05551288.1| ATPase [Fusobacterium sp. 3_1_36A2]
 gi|256719389|gb|EEU32944.1| ATPase [Fusobacterium sp. 3_1_36A2]
          Length = 407

 Score =  150 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 68/339 (20%), Positives = 120/339 (35%), Gaps = 58/339 (17%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            L  +N    +     LRP++LE+F GQ +      V           L + +F GPPG 
Sbjct: 2   NLFQKNYKNVEPLAYKLRPKSLEDFVGQEKLLGKDGVITRLIL--NSTLSNSIFYGPPGC 59

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLS 118
           GK++L ++++  L  NF   +    A   D+  ++            R +LF+DEIHR +
Sbjct: 60  GKSSLGEIISNTLDCNFEKLNA-TTASVSDIRNVVETARRNIELYNKRTILFLDEIHRFN 118

Query: 119 IIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
              ++ L    ED  L L+    E P        LSR                      +
Sbjct: 119 KNQQDALLSYTEDGTLTLIGATTENPYYNINNALLSRV---------------------M 157

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
                    +D+  ++ +G     ++++D+    I   S+G  RIA   +          
Sbjct: 158 VFEFKALTNKDILKLINKGLNFLNISMSDKIKEIIVDISQGDSRIALNYVEMY------- 210

Query: 237 HAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAI 296
                T+   D         ++ FD+   +Y               + ISA +   R + 
Sbjct: 211 -NNIHTQMTEDEIFSIFKERQVSFDKKQDKY---------------DMISAFIKSVRGSD 254

Query: 297 EDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            D    ++ +       P+   R L   A + +G+  P 
Sbjct: 255 PDAAVYWLARLLDGGEDPKYMARRLFIEASEDIGMANPE 293


>gi|149908481|ref|ZP_01897144.1| putative ATPase protein [Moritella sp. PE36]
 gi|149808644|gb|EDM68579.1| putative ATPase protein [Moritella sp. PE36]
          Length = 444

 Score =  150 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 65/340 (19%), Positives = 112/340 (32%), Gaps = 45/340 (13%)

Query: 5   EGLLSRNVSQE-DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
              +S + S +     + +RP  + ++ GQ       K    A  A       ++  GPP
Sbjct: 2   NNTMSLDFSPDFQPLAARMRPEKMSQYIGQTHILGEGKPLHRALLAGHA--HSMILWGPP 59

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRL 117
           G GKTT+A+++A             V +   D+   +   +D      R +LF+DE+HR 
Sbjct: 60  GTGKTTIAEMIAHYCDAKVERVHA-VTSGIKDIRLAIEKAKDNAIQGFRTILFVDEVHRF 118

Query: 118 SIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
           +   ++   P +ED  +  +    E PS       LSR        RV +L     D   
Sbjct: 119 NKSQQDAFLPHIEDGTIIFIGATTENPSFELNNALLSR-------ARVYVLKKLTADEIQ 171

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
             I     +         RG              ++   + G  R +   L  + D AE 
Sbjct: 172 QVIDQALAD--------TRGLAKVKFNFAPGVKEKLCELADGDARKSLNYLELLNDMAED 223

Query: 236 AHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDA 295
                +     +  +  +      FD                G +  + +SA     R +
Sbjct: 224 EGQGKLI--TLERLMSVVGRKVNSFD--------------NKGELYYDLMSALHKSIRGS 267

Query: 296 IEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
             D    +  +       P    R L+ IA + +G   P 
Sbjct: 268 SPDAALYWFARMLAGGCDPLHVARRLLAIASEDIGNADPR 307


>gi|254881703|ref|ZP_05254413.1| recombination factor protein RarA [Bacteroides sp. 4_3_47FAA]
 gi|319643669|ref|ZP_07998286.1| AAA family ATPase [Bacteroides sp. 3_1_40A]
 gi|254834496|gb|EET14805.1| recombination factor protein RarA [Bacteroides sp. 4_3_47FAA]
 gi|317384699|gb|EFV65661.1| AAA family ATPase [Bacteroides sp. 3_1_40A]
          Length = 425

 Score =  150 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 76/330 (23%), Positives = 120/330 (36%), Gaps = 52/330 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP+TL+++ GQ        V  +   A    +   +  GPPG+GKTTLAQ++A 
Sbjct: 4   PLAERLRPKTLDDYIGQKHLVGPGAVLRKMIDA--GRISSFILWGPPGVGKTTLAQIIAN 61

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAM 129
           +L   F + S  V +   D+  ++              +LFIDEIHR S   ++ L  A+
Sbjct: 62  KLETPFYTLSA-VTSGVKDVRDVIEKARSNRFFSQASPILFIDEIHRFSKSQQDSLLGAV 120

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E   + L+    E PS   ++  LSR  L    +        L                 
Sbjct: 121 ETGVVTLIGATTENPSFEVIRPLLSRCQLYVLKSLEKEDLLELLHN-------------A 167

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           +   V    K   + + +  A  +   S G  R    +L  V +    A    IT E   
Sbjct: 168 IAKDV--ILKEKKIELKETDA--MLRFSGGDARKLLNILELVVEADADAGPVVITDEKVT 223

Query: 248 AALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
             L +   A DK G    D+                   ISA +   R +  D    ++ 
Sbjct: 224 ERLQQNPLAYDKDGEMHYDI-------------------ISAFIKSIRGSDPDGALYWLA 264

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +       P    R L+  A + +G+  P+
Sbjct: 265 RMVEAGEDPAFIARRLVISAAEDIGLANPN 294


>gi|220915883|ref|YP_002491187.1| AAA ATPase central domain protein [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219953737|gb|ACL64121.1| AAA ATPase central domain protein [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 437

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 81/345 (23%), Positives = 123/345 (35%), Gaps = 51/345 (14%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD       +          +RPR LE+F GQ            + +A  + +  ++  G
Sbjct: 1   MDLFDRAVADDPSGKPLAERMRPRRLEDFAGQEHVLGPGTALRRSIEA--DQVPSLILWG 58

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEI 114
           PPG GKTTLA++VA+  G +F   S  V+    ++  ++            R +LF+DEI
Sbjct: 59  PPGTGKTTLARIVAQRTGADFVPFSA-VLGGVKEIREIVAAARDRRRMHRKRTILFVDEI 117

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++   P +ED  + L+    E PS       LSR  +             L D
Sbjct: 118 HRFTRAQQDAFLPHVEDGTITLIGATTENPSFEVNAALLSRCRVATLRALTEDEVAALLD 177

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R            E L   V         A+T EA   IA  S G  R A   L      
Sbjct: 178 R-------AVAAPEGLAGAV---------ALTPEARDTIARLSYGDARKALNALEVSAAA 221

Query: 233 AEVAHAKTITREIADAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
             +A    + +  A+ AL       DK G +                       +SA + 
Sbjct: 222 VRLAGRPAVEKADAEEALQARTVNYDKQGEEHY-------------------NVVSAFIK 262

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPRG--RLLMPIAWQHLGIDIPH 333
             R +  D    YM++       PR   R ++  A + +G   P 
Sbjct: 263 SLRGSDPDAAVYYMVRMLEAGEDPRFVLRRMVIFASEDVGNADPQ 307


>gi|288800898|ref|ZP_06406355.1| ATPase, AAA family [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332359|gb|EFC70840.1| ATPase, AAA family [Prevotella sp. oral taxon 299 str. F0039]
          Length = 425

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 73/330 (22%), Positives = 118/330 (35%), Gaps = 51/330 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP +LEE+ GQ               ++   +   +  GPPG+GKTTLA +++ 
Sbjct: 4   PLAERLRPNSLEEYVGQQHIIGKGAPLRRIIDSKHG-VPSFILWGPPGVGKTTLATIISH 62

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL-EDR------DVLFIDEIHRLSIIVEEILYPAM 129
            + V F + S  V +   ++  ++    ++R       +LFIDEIHR S   ++ L  A+
Sbjct: 63  TIDVPFYTLSA-VTSGVKEVREVIDKATKERFFSNNAPILFIDEIHRFSKSQQDSLLGAV 121

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E   + L+    E PS   ++  LSR                L  R              
Sbjct: 122 EKGVVTLIGATTENPSFEVIRPLLSRCQTYILQPLSKNDLEALLQR-------------A 168

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           +   V+   +   L  TD         S G  R    +L  V D         IT +   
Sbjct: 169 ITEDVELQQRNIELRETDALLH----FSGGDARKLLNILELVVDAFVGDEKVIITNDFVK 224

Query: 248 AALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
             L +   A DK G    D+                   ISA +   R +  D    ++ 
Sbjct: 225 QCLQQNPLAYDKGGEMHYDI-------------------ISAFIKSIRGSDPDAAIYWLA 265

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +       P+   R L+  A + +G+  P+
Sbjct: 266 RMISAGEDPKFIARRLVISASEDIGLANPN 295


>gi|226227315|ref|YP_002761421.1| ATPase [Gemmatimonas aurantiaca T-27]
 gi|226090506|dbj|BAH38951.1| ATPase [Gemmatimonas aurantiaca T-27]
          Length = 459

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 78/330 (23%), Positives = 123/330 (37%), Gaps = 50/330 (15%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +   + +RPRTLEE+ GQ    +      EA       +D ++F GPPG+GKTTLA+++A
Sbjct: 19  EPLAARMRPRTLEEYLGQEHLLAVGMPLREA--LSRGKVDSMVFWGPPGVGKTTLARLLA 76

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAM 129
           +     F S S  V      +  ++   E R       +LF+DEIHR +   ++   P +
Sbjct: 77  QSTEAAFVSFSA-VSDGVARVREIVAEAERRRDGGRGTILFVDEIHRFNRAQQDAFLPHV 135

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E   + L+    E PS       LSR  ++            L  R              
Sbjct: 136 ETGTVVLIGATTENPSFALTGALLSRVRVMVLEAIPVSTLEGLVQR-------------- 181

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
                 RG    GL++ D+A   +A  S G  R    +L        V     I R   +
Sbjct: 182 AVEDRDRGLGARGLSIDDDARHLLAESSDGDARRLLGVLEAAASL--VDDGGAIVRATVE 239

Query: 248 AALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           AA+       DK G +  +L                   ISA     R +       ++ 
Sbjct: 240 AAMQYRPPRYDKSGEEHYNL-------------------ISALHKALRGSDPHGALYWLA 280

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +       PR   R ++ +A + +G+  P 
Sbjct: 281 RMIQGGEDPRYIARRMVRMATEDIGLADPQ 310


>gi|325290070|ref|YP_004266251.1| Recombination protein MgsA [Syntrophobotulus glycolicus DSM 8271]
 gi|324965471|gb|ADY56250.1| Recombination protein MgsA [Syntrophobotulus glycolicus DSM 8271]
          Length = 434

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 72/330 (21%), Positives = 121/330 (36%), Gaps = 50/330 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+   +F GQ E     K+   A +A  + +  ++  GPPG GKT++AQ++A 
Sbjct: 15  PLAERMRPQGFADFIGQEEILGPGKLLRRAIEA--DRIGSIILFGPPGSGKTSIAQIIAN 72

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAM 129
               +F   +  V A A +L A++   E        + ++F DE+HR +   ++IL PA+
Sbjct: 73  HTSSDFVRINA-VSAGAKELRAIIDQAEEKLKLYGQKTLVFCDEVHRFNKGQQDILLPAV 131

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E   ++ +    E P        LSR +L    +                       I  
Sbjct: 132 EKGLINFIGATTENPYFELNSALLSRSSLFRLRSLNEEDIKR--------------GISQ 177

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE-VAHAKTITREIA 246
                 +G       V+ EA    A  + G  R A   L       + V   +T+  E A
Sbjct: 178 ALNDPVKGLGNYKTNVSPEALAFWAGFANGDLRRALNALELAVLTTQPVEGIRTVDLETA 237

Query: 247 DAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
             ++   A   DK G +  D+                   ISA +   R +  D    + 
Sbjct: 238 KESIQERACLYDKKGDNHYDM-------------------ISAMIKSMRGSDPDAALYWF 278

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
                    PR   R ++  A + +G+  P
Sbjct: 279 ALILESGEDPRFVMRRIIIHASEDVGLADP 308


>gi|288549436|ref|ZP_05967088.2| hypothetical protein ENTCAN_05464 [Enterobacter cancerogenus ATCC
           35316]
 gi|288319085|gb|EFC58023.1| replication-associated recombination protein A [Enterobacter
           cancerogenus ATCC 35316]
          Length = 428

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 75/321 (23%), Positives = 115/321 (35%), Gaps = 40/321 (12%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  L ++ GQ    +  K    A +A    L  ++  GPPG GKTTLA+V+AR    +
Sbjct: 1   MRPENLAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIARYANAD 58

Query: 82  FRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
               S        I +A + A    N   R +LF+DE+HR +   ++   P +ED  +  
Sbjct: 59  VERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTIFF 118

Query: 137 M--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           +    E PS       LSR        RV LL +   +     +     +         R
Sbjct: 119 IGATTENPSFELNSALLSR-------ARVYLLKSLTTEDIEHVLTQAMSDK-------AR 164

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
           G     + + DE    IA +  G  R A   L  + D AEV  A     +      +   
Sbjct: 165 GYGGQDIVLPDETRLAIAQQVNGDARRALNTLEMMADMAEVDDAGKRVLKPELLTEIAGE 224

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
                 ++ D  Y               + ISA     R +  D    +  +       P
Sbjct: 225 RSARFDNKGDRFY---------------DLISALHKSVRGSAPDAALYWYARIITAGGDP 269

Query: 315 R--GRLLMPIAWQHLGIDIPH 333
               R  + IA + +G   P 
Sbjct: 270 LYVARRCLAIASEDVGNADPR 290


>gi|229543727|ref|ZP_04432787.1| AAA ATPase central domain protein [Bacillus coagulans 36D1]
 gi|229328147|gb|EEN93822.1| AAA ATPase central domain protein [Bacillus coagulans 36D1]
          Length = 425

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 74/325 (22%), Positives = 130/325 (40%), Gaps = 37/325 (11%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           +++     +RPRT++E  GQ       K+     KAR   L  ++  GPPG+GKT++A  
Sbjct: 2   KDEPLAYRMRPRTIDEVIGQEHLVGKNKIIYRMVKARQ--LSSMILYGPPGVGKTSIASA 59

Query: 74  VARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           +A      FR+ +     K   ++ A    +  + +L +DE+HRL    ++ L P +E  
Sbjct: 60  IAGSTKYAFRTLNAVTNNKKDMEIVAAEAKMSGKVILLLDEVHRLDKAKQDFLLPYLESG 119

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            + +++G   S     IN +    I +  ++  L     D     +     + +      
Sbjct: 120 MI-VLIGATTSNPYHAINPA----IRSRCQIFELFPLSLDEIKTALTRALDDAD------ 168

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT--ITREIADAAL 250
            RG     + + + A    A  S G  R A   L      +E        IT  IA+  L
Sbjct: 169 -RGLGKYKVKIEEAAFNHFAQGSNGDVRSALNALELAVISSEPDDDGVIHITLAIAEECL 227

Query: 251 LRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            +   A DK G    D+  L+   ++  G            S+   A+  L    +I+ G
Sbjct: 228 QKKSLAHDKDGDAHYDV--LSAFQKSIRG------------SDANAALHYLGR--LIEAG 271

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIPH 333
            +      R L+ IA++ +G+  P 
Sbjct: 272 DLPSI--ARRLLVIAYEDIGLASPQ 294


>gi|94985501|ref|YP_604865.1| recombination factor protein RarA [Deinococcus geothermalis DSM
           11300]
 gi|94555782|gb|ABF45696.1| AAA ATPase, central region [Deinococcus geothermalis DSM 11300]
          Length = 451

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 81/330 (24%), Positives = 122/330 (36%), Gaps = 64/330 (19%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
             LRPRTL E  GQ       +        +   L  ++F GPPG+GKTTLA+++A E+G
Sbjct: 32  ERLRPRTLAEVVGQGHLLGPGRPLTR--LLQGGRLGSLIFWGPPGVGKTTLARLIASEVG 89

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQ 133
            +F   S  V A   D+   +   E         +LF+DEIHR +   ++ L P +E   
Sbjct: 90  AHFIPLSA-VSAGVKDVREAVMEAERLRARGQPTILFLDEIHRFNKAQQDALLPHVESGL 148

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           L L+    E PS        SR   +                            ED++ +
Sbjct: 149 LTLIGATTENPSFEVNPALRSRARTLVL---------------------EPLSQEDVRGL 187

Query: 192 VQRGA----KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           ++R       L G+A   EA   +A  + G  R A   L      A       +T E   
Sbjct: 188 LERALADPRGLPGVAAQPEALDLLARLADGDARRALGTLEVAATLA-----NPVTSEAVR 242

Query: 248 AALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
            A  R   A+DK G D  +L                   ISA     R +  +    ++ 
Sbjct: 243 EAFGRHLPAMDKNGEDFYNL-------------------ISALHKSVRGSHVNASLYWLA 283

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +       P    R +M +A + +G+  P 
Sbjct: 284 RLLEGGADPLYVARRIMRMASEDIGLADPQ 313


>gi|294852541|ref|ZP_06793214.1| ATPase [Brucella sp. NVSL 07-0026]
 gi|294821130|gb|EFG38129.1| ATPase [Brucella sp. NVSL 07-0026]
          Length = 437

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 79/348 (22%), Positives = 125/348 (35%), Gaps = 60/348 (17%)

Query: 1   MMDREGLL-SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M D    +   N  +       LRP+ L E TGQ        V        + +L  ++F
Sbjct: 1   MSDLFSTVADPNADRNRPLADRLRPKHLSEVTGQEHLTGPEGVLTRMI--ASGSLGSMVF 58

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDE 113
            GPPG GKTT+A+++A E  + F   S  + +   DL  +            + +LF+DE
Sbjct: 59  WGPPGTGKTTVARLLAGETDLAFEQISA-IFSGVADLKRVFEAARARRMSGRQTLLFVDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++   P MED  + L+    E PS       LSR                  
Sbjct: 118 IHRFNRAQQDSFLPVMEDGTVILIGATTENPSFELNAALLSR------------------ 159

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTG--LAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
                 +  + ++ E + T+++R  +  G  L + DEA   +   + G  R A  L   V
Sbjct: 160 ---ARVLTFHPHDSESIATLLKRAEEQEGQALPLDDEARASLIRMADGDGRAALTLAEEV 216

Query: 230 RDFAEVAHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISA 287
                V   +          + R A   DK      +L                   ISA
Sbjct: 217 WR--AVRPGEVFDAAKLQDVVQRRAPVYDKSQDGHYNL-------------------ISA 255

Query: 288 GLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                R +  D    Y+ +       P   GR L+ +A + +G+  P 
Sbjct: 256 LHKSVRGSDPDAALYYLSRMFDAGEDPLYIGRRLVRMAVEDIGLADPQ 303


>gi|261344311|ref|ZP_05971955.1| replication-associated recombination protein A [Providencia
           rustigianii DSM 4541]
 gi|282567915|gb|EFB73450.1| replication-associated recombination protein A [Providencia
           rustigianii DSM 4541]
          Length = 447

 Score =  149 bits (377), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 72/343 (20%), Positives = 116/343 (33%), Gaps = 54/343 (15%)

Query: 8   LSRNVSQED--ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           LS + SQ +     + +RP +LE++ GQ    +  K    A KA    L  ++  GPPG 
Sbjct: 4   LSLDFSQNEFQPLAARMRPESLEQYIGQKHLLAQGKPLPRAIKAGH--LHSMILWGPPGT 61

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSI 119
           GKTTLA+++      +    S  V +   ++   +           R +LF+DE+HR + 
Sbjct: 62  GKTTLAEIIGHYAQADIERLSA-VTSGIKEIRESIEKARQNLSAGRRTILFVDEVHRFNK 120

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATT-----RVGLLTNPLQD 172
             ++   P +ED  +  +    E PS       LSR  +    +        +L   L D
Sbjct: 121 SQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLDESEIEDVLLQALSD 180

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
                                RG     + + D     IA    G  R +  LL  + D 
Sbjct: 181 S-------------------TRGLGGQNIILPDSTRKMIAQLVNGDARRSLNLLEMMADM 221

Query: 233 AEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEP 292
           AE                +         ++ D  Y               + ISA     
Sbjct: 222 AEADSQGQRVLTSDLLKEVSGERAVRFDNKGDRYY---------------DLISALHKSV 266

Query: 293 RDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           R +  D    +  +       P    R L+ IA + +G   P 
Sbjct: 267 RGSAPDAALYWYARIITAGGDPLYVARRLLAIASEDVGNADPR 309


>gi|116071416|ref|ZP_01468685.1| ATPase [Synechococcus sp. BL107]
 gi|116066821|gb|EAU72578.1| ATPase [Synechococcus sp. BL107]
          Length = 726

 Score =  149 bits (377), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 80/332 (24%), Positives = 125/332 (37%), Gaps = 51/332 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RPRTLEEF GQ    +  ++   A KA  + + +++  GPPG+GKTTLA++VA 
Sbjct: 20  PLADRMRPRTLEEFEGQQGILAEGRLLQRAIKA--DRVGNLILHGPPGVGKTTLARIVAN 77

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAM 129
                  S    V+A   DL A +   + R        +LFIDE+HR +   ++ L P +
Sbjct: 78  HT-RAHFSNLNAVLAGVKDLRAEVDAAQQRLERHGLRTILFIDEVHRFNSAQQDALLPWV 136

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E+  + L+    E P     K  +SR  L           + L  R              
Sbjct: 137 ENGTVTLIGATTENPFFEVNKALVSRSRLFRLLPLEPKDLHQLLQR-------------- 182

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI----TR 243
             T  +RG     + +  +AA  +   + G  R     L    + +E A   TI    T 
Sbjct: 183 ALTDQERGYGERSVVLDTDAANHLVDVAGGDARSLLNALELAVESSEPASDGTIAISLTT 242

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
                    +  DK G    D                   TISA +   R +  D    +
Sbjct: 243 AEESIQQRAVLYDKQGDAHYD-------------------TISAFIKSLRGSDADAALFW 283

Query: 304 MIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           + +       PR   R ++  A + +G+  P 
Sbjct: 284 LARMVEAGENPRFIFRRMLIAAGEDIGLADPQ 315


>gi|62179486|ref|YP_215903.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|198244942|ref|YP_002214886.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|205352170|ref|YP_002225971.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207856354|ref|YP_002243005.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224582772|ref|YP_002636570.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|62127119|gb|AAX64822.1| paral putative polynucleotide enzyme [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|197939458|gb|ACH76791.1| putative DNA recombination-associated ATPase RarA [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|205271951|emb|CAR36795.1| conserevd hypothetical protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|206708157|emb|CAR32450.1| conserevd hypothetical protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|224467299|gb|ACN45129.1| conserevd hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|322713955|gb|EFZ05526.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
 gi|326622639|gb|EGE28984.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
 gi|326627214|gb|EGE33557.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 447

 Score =  149 bits (377), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 73/326 (22%), Positives = 111/326 (34%), Gaps = 40/326 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP  L ++ GQ    +  K    A +A    L  ++  GPPG GKTTLA+V+AR
Sbjct: 15  PLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIAR 72

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
               +    S        I +A + A    N   R +LF+DE+HR +   ++   P +ED
Sbjct: 73  YASADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED 132

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             +  +    E PS       LSR  +    +        + D                 
Sbjct: 133 GTITFIGATTENPSFELNSALLSRARVYLLKSLTTDDIEQVLD--------------QAM 178

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
               RG     + + +E    IA    G  R A   L  + D AE   +          A
Sbjct: 179 QDKTRGYGDQDIVLPNETRRAIAELVNGDARRALNTLEMMADMAEADDSGKRVL---LPA 235

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           LL     +              AR    G    + ISA     R +  D    +  +   
Sbjct: 236 LLTEIAGERS------------ARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIIT 283

Query: 310 IQRTPR--GRLLMPIAWQHLGIDIPH 333
               P    R  + IA + +G   P 
Sbjct: 284 AGGDPLYVARRCLAIASEDVGNADPR 309


>gi|198276725|ref|ZP_03209256.1| hypothetical protein BACPLE_02924 [Bacteroides plebeius DSM 17135]
 gi|198270250|gb|EDY94520.1| hypothetical protein BACPLE_02924 [Bacteroides plebeius DSM 17135]
          Length = 424

 Score =  149 bits (377), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 74/330 (22%), Positives = 124/330 (37%), Gaps = 53/330 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+TL+E+ GQ        V     +A    +   +  GPPG+GKTTLAQ+VA 
Sbjct: 4   PLAERMRPKTLDEYIGQKHLVGEGAVLRRMIEA--GRISSFILWGPPGVGKTTLAQIVAN 61

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAM 129
              V F + S  V +   ++  ++          +   +LFIDEIHR S   ++ L  A+
Sbjct: 62  RQEVPFYTLSA-VTSGVKEVREVIEKAKANRFFSQQSPILFIDEIHRFSKSQQDSLLGAV 120

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E   + L+    E PS   ++  LSR  L    +                +       + 
Sbjct: 121 ETGVVTLIGATTENPSFEVIRPLLSRCQLYVLKSLEKEDLL--------ELLHLALTKDP 172

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           +    +R  +L            +   S G  R    +L  V + A+ A+   IT E   
Sbjct: 173 ILK--ERQVELKETDA-------MLRYSGGDARKLLNILELVIE-ADTANPVVITDEKVV 222

Query: 248 AALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           ++L +   A DK G    D+                   +SA +   R +  D    ++ 
Sbjct: 223 SSLQQNPLAYDKEGEMHYDI-------------------VSAFIKSIRGSDPDGALYWLA 263

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +       P    R L+  A + +G+  P+
Sbjct: 264 RMVEGGEDPAFIARRLVISASEDIGLANPN 293


>gi|291515550|emb|CBK64760.1| Recombination protein MgsA [Alistipes shahii WAL 8301]
          Length = 425

 Score =  149 bits (377), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 76/328 (23%), Positives = 120/328 (36%), Gaps = 50/328 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRPRT++E+ GQ        VF +  +     +   +  GPPG+GKTTLA++VA 
Sbjct: 5   PLAERLRPRTIDEYIGQEHLVGKNGVFRKFFETGN--VPSFILWGPPGVGKTTLAKIVAT 62

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAM 129
           +L   F + S  V +   D+  ++ +   +        +LFIDEIHR +   ++ L  A+
Sbjct: 63  QLERPFFTLSA-VTSGVKDVREVIESARKQRFFDQKAPLLFIDEIHRFNKSQQDSLLGAV 121

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E     L+    E PS   +   LSR  +    +        L DR              
Sbjct: 122 EQGVFTLIGATTENPSFEVISPLLSRCQVYILKSLEDKDLQTLLDR-------------A 168

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           L T  +   K   + VT+  A      S G  R    +L  V    +     T       
Sbjct: 169 LTTDTE--LKERDIEVTETGALF--RFSGGDARKLLNILEIVVGATDGKVTITDRYVTDC 224

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
                   DK G    D+                   ISA +   R +  +    Y+ + 
Sbjct: 225 LQQNIALYDKNGEQHYDV-------------------ISAFIKSVRGSDPNAAIYYLARM 265

Query: 308 GFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                 PR   R L+ +A + +G+  P+
Sbjct: 266 LAGGEEPRFLARRLVILASEDIGLANPN 293


>gi|220929355|ref|YP_002506264.1| recombination factor protein RarA [Clostridium cellulolyticum H10]
 gi|219999683|gb|ACL76284.1| AAA ATPase central domain protein [Clostridium cellulolyticum H10]
          Length = 432

 Score =  149 bits (377), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 72/327 (22%), Positives = 120/327 (36%), Gaps = 43/327 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                + PRT++EF GQ       K+     KA  + +  ++  GPPG GKT+LA+++A 
Sbjct: 7   PLAYRMSPRTIDEFVGQKHIIEKDKMLYRMIKA--DRITSIILYGPPGTGKTSLARIIAN 64

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAM 129
                F   +  V +   D+  +  + ++       R VLFIDEIHR +   ++ L P +
Sbjct: 65  TTQSTFEKLNA-VTSGVADIKRIAADTQNTLLNPNGRTVLFIDEIHRFNKSQQDALLPFV 123

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ED  + L+    E P     K  +SR T+             L              +E+
Sbjct: 124 EDGSIVLIGATTENPFFEVNKALISRSTVFMLKPLESTDIREL--------------LEN 169

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
                +RG     + +TDEA   +     G  R A   L      +E             
Sbjct: 170 ALVDKERGLGNYKINITDEALGYLCEICSGDARTALNSLELAVLTSE------------- 216

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
             L       +G D ++        R    G    + ISA +   R +  D    Y+ + 
Sbjct: 217 --LGVDGQIDIGIDTIEQCVQKKAIRFDKSGEEHYDNISAFIKSMRGSSPDAAVFYLARA 274

Query: 308 GFIQRTP--RGRLLMPIAWQHLGIDIP 332
            +         R ++  A + +G+  P
Sbjct: 275 LYAGEDVEFLARRIIICASEDVGMANP 301


>gi|126322071|ref|XP_001368425.1| PREDICTED: similar to Werner helicase interacting protein 1 isoform
           1 [Monodelphis domestica]
          Length = 695

 Score =  149 bits (377), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 71/357 (19%), Positives = 130/357 (36%), Gaps = 42/357 (11%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFV 60
           RE +  + V +  AD   +RP TL+E+ GQ +       L+  +E+ +     +  ++  
Sbjct: 240 REEIWQKLVGKPLAD--KMRPATLQEYIGQNKVVGQETLLRSLLESNE-----IPSLILW 292

Query: 61  GPPGLGKTTLAQVVARELGVNFRST--SGPVIAKAGDLAALLTNLE-------DRDVLFI 111
           GPPG GKTTLA ++A     N           AK  D+  ++   +        + +LFI
Sbjct: 293 GPPGCGKTTLAYIIANNSKKNSMRFVTLSATSAKTSDVRDVIKQAQNEKNFFKRKTILFI 352

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DEIHR +   ++   P +E   + L+    E PS +     LSR  +I            
Sbjct: 353 DEIHRFNKSQQDTFLPHVECGTVTLIGATTENPSFQVNAALLSRCRVIVLEKLSAEAMKT 412

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG--------LAVTDEAACEIAMRSRGTPRI 221
           +  R    + L   +       V  G   +         + + D+A   +A    G  R 
Sbjct: 413 ILMRAVSSLGLRVLDQGRPTDSVSHGNSSSCSSSSSEPLVYIEDKAVNTLAYLCDGDART 472

Query: 222 AGRLLRRVRDFAEVAHAKTITREIADAA----LLRLAIDKMGFDQLDLRYLTMIARNFGG 277
               L+        +      + + + +    L+     K G  +  + Y      ++  
Sbjct: 473 GLNGLQLAVQAKLGSRKPFCKKTVQNYSGESVLITENDIKEGLQRSHILYDRAGEEHYNC 532

Query: 278 GPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
                  ISA     R + ++    ++ +       P    R L+  A + +G+  P
Sbjct: 533 -------ISALHKSMRGSDQNASLYWLARMLEGGEDPLYVARRLVRFASEDIGLADP 582


>gi|312882487|ref|ZP_07742228.1| recombination factor protein RarA [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309369887|gb|EFP97398.1| recombination factor protein RarA [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 448

 Score =  149 bits (377), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 73/326 (22%), Positives = 116/326 (35%), Gaps = 40/326 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP  LE + GQ       K    A +A    L  ++  GPPG GKTTLA++ A+
Sbjct: 16  PLAARMRPNKLEGYIGQSHILGKGKPLRRAIEAGH--LHSMILWGPPGTGKTTLAELAAQ 73

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
                    S        I  A D A        R VLF+DE+HR +   ++   P +ED
Sbjct: 74  YADAEVERVSAVTSGVKEIRLAIDKARENKLAGRRTVLFVDEVHRFNKSQQDAFLPHIED 133

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             +  +    E PS       LSR        RV  L+   +D   + ++      ++  
Sbjct: 134 GTVTFIGATTENPSFELNNALLSR-------ARVYKLSALDKDDILLALKQAIECSDN-- 184

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
                G   +     D     +A   +G  R++   L  + D AE         ++   A
Sbjct: 185 -----GLGQSTALFKDNVLDRLAELVQGDVRMSLNYLELLYDMAEEDAKGN---KVITLA 236

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           LL     +             ++R    G +  + ISA     R +  D    +  +   
Sbjct: 237 LLAEVAGEK------------VSRFDNKGDIWYDLISALHKSIRGSNPDAALYWAARMIS 284

Query: 310 IQRTPR--GRLLMPIAWQHLGIDIPH 333
               P    R L+ IA + +G   P 
Sbjct: 285 AGCDPLYIARRLLAIASEDIGNADPR 310


>gi|258593286|emb|CBE69625.1| putative polynucleotide enzyme with nucleotide triphosphate
           hydrolase domain [NC10 bacterium 'Dutch sediment']
          Length = 423

 Score =  149 bits (377), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 75/326 (23%), Positives = 122/326 (37%), Gaps = 50/326 (15%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRTL+EF GQ       K+   A +A    L  ++  GPPG GKTTLA ++A E    
Sbjct: 1   MRPRTLQEFVGQEHLLGEGKLLRRAMEAGE--LPSLILWGPPGSGKTTLAFLLA-ERCKA 57

Query: 82  FRSTSGPVIAKAGDLAALL------TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                  V +   ++  ++           R +LFIDEIHR +   ++   P +E   + 
Sbjct: 58  TFQPFSAVTSGIKEIKEVIVRAQQERGYGRRTLLFIDEIHRFNKAQQDAFLPHVEGGTIV 117

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           L+    E PS   +   LSR  ++           PL +   + I     + +      +
Sbjct: 118 LIGATTENPSFEVIAPLLSRAKVVTLR--------PLAEDALMLILRRALDDQ------E 163

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF--AEVAHAKTITREIADAALL 251
           RG     +   DEA   IA    G  R++   L         +   ++ +T ++A  A  
Sbjct: 164 RGLGRLQIEADDEALRIIAGLGSGDARVSLNTLELAAQMVKEQPDGSRRLTAQVAQEASG 223

Query: 252 RLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           R     DK G +  +L                   ISA     R +  D    ++ +   
Sbjct: 224 RRTLLYDKTGEEHYNL-------------------ISALHKSLRGSDPDAALYWLARMLA 264

Query: 310 IQRTPR--GRLLMPIAWQHLGIDIPH 333
               P    R ++  A + +G   P 
Sbjct: 265 SGEDPMYIARRVVRFASEDIGNADPQ 290


>gi|67810107|gb|AAY81985.1| Holliday junction DNA helicase [Wolbachia pipientis]
          Length = 147

 Score =  149 bits (377), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 91/147 (61%), Positives = 122/147 (82%)

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           GLGKTTLAQ+V++EL V+FR+TSGP+++KAGDLAA+LT L  +DVLFIDEIHRL+  +EE
Sbjct: 1   GLGKTTLAQIVSKELRVSFRATSGPLLSKAGDLAAVLTTLNAKDVLFIDEIHRLNRSIEE 60

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +LY AMEDF LD++VGEGPS R+++I+L  FTLI ATTR+GLL+ PL+DRFGIP+ L FY
Sbjct: 61  VLYTAMEDFCLDILVGEGPSTRTLRIDLPPFTLIGATTRLGLLSAPLRDRFGIPLHLEFY 120

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACE 210
             E+L  I++RGA++    + ++AA E
Sbjct: 121 SFEELVNIIKRGARVLSAEIEEDAARE 147


>gi|300921074|ref|ZP_07137458.1| replication-associated recombination protein A [Escherichia coli MS
           115-1]
 gi|300411925|gb|EFJ95235.1| replication-associated recombination protein A [Escherichia coli MS
           115-1]
          Length = 428

 Score =  149 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 73/326 (22%), Positives = 114/326 (34%), Gaps = 50/326 (15%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  L ++ GQ    +  K    A +A    L  ++  GPPG GKTTLA+V+AR    +
Sbjct: 1   MRPENLAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIARYANAD 58

Query: 82  FRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
               S        I +A + A    N   R +LF+DE+HR +   ++   P +ED  +  
Sbjct: 59  VERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 118

Query: 137 M--VGEGPSARSVKINLSRFTLIAATT-----RVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           +    E PS       LSR  +    +        +LT  ++D+                
Sbjct: 119 IGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDK---------------- 162

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
               RG     + + DE    IA    G  R A   L  + D AEV        +     
Sbjct: 163 ---TRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDRGKRVLKPELLT 219

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
            +         ++ D  Y               + ISA     R +  D    +  +   
Sbjct: 220 EIAGERSARFDNKGDRFY---------------DLISALHKSVRGSAPDAALYWYARIIT 264

Query: 310 IQRTPR--GRLLMPIAWQHLGIDIPH 333
               P    R  + IA + +G   P 
Sbjct: 265 AGGDPLYVARRCLAIASEDVGNADPR 290


>gi|39936283|ref|NP_948559.1| recombination factor protein RarA [Rhodopseudomonas palustris
           CGA009]
 gi|39650138|emb|CAE28661.1| AAA ATPase [Rhodopseudomonas palustris CGA009]
          Length = 443

 Score =  149 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 78/344 (22%), Positives = 121/344 (35%), Gaps = 56/344 (16%)

Query: 4   REGLLSRNVSQEDADIS---LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
            + L +    + DA       LRPR+L +  GQ              + R   L  ++F 
Sbjct: 9   SDNLFAAAGLERDAPRPLPDRLRPRSLADVVGQDHILGPDGALTRMLQTR--TLGSLVFW 66

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIH 115
           GPPG GKTT+A+++A    + F   S        + K  D A     +    +LF+DE+H
Sbjct: 67  GPPGTGKTTVARLLADATELQFEQISAVFSGVADLKKVFDAARARREMGKGTLLFVDEVH 126

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P MED  + ++    E PS       LSR                   R
Sbjct: 127 RFNKAQQDSFLPVMEDGTVVMVGATTENPSFELNAALLSR------------------AR 168

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
             I   L+   IE L +  +  A+   L + DEA   +A  + G  R +  L   V   A
Sbjct: 169 VLIFKPLDAAAIEQLFSKAE-AAEGRKLPLDDEARAVLARMADGDGRASLTLAEEVWRSA 227

Query: 234 EVAHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
                +          L R A   DK      +L                   ISA    
Sbjct: 228 --REGEVFNAAQLQEILQRRAPIYDKSADGHYNL-------------------ISALHKS 266

Query: 292 PRDAIEDLIEPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
            R +  D    Y+ +       P    R ++ +A + +G+  P 
Sbjct: 267 VRGSDPDAALYYLCRMLDAGEDPLFLARRVVRMAVEDVGMADPQ 310


>gi|161503912|ref|YP_001571024.1| recombination factor protein RarA [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160865259|gb|ABX21882.1| hypothetical protein SARI_02002 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 428

 Score =  149 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 79/321 (24%), Positives = 115/321 (35%), Gaps = 40/321 (12%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  L ++ GQ    +  K    A +A    L  ++  GPPG GKTTLA+V+AR    +
Sbjct: 1   MRPENLAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIARYASAD 58

Query: 82  FRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
               S        I +A + A    N   R +LF+DE+HR +   ++   P +ED  +  
Sbjct: 59  VERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 118

Query: 137 M--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           +    E PS       LSR        RV LL +   D     +       +       R
Sbjct: 119 IGATTENPSFELNSALLSR-------ARVYLLKSLTIDDIEQVL-------DQAMQDKTR 164

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
           G     + + DE    IA    G  R A   L  + D AEV  +          ALL   
Sbjct: 165 GYGDQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVL---LPALLTEI 221

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
             +              AR    G    + ISA     R +  D    +  +       P
Sbjct: 222 AGERS------------ARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDP 269

Query: 315 R--GRLLMPIAWQHLGIDIPH 333
               R  + IA + +G   P 
Sbjct: 270 LYVARRCLAIASEDVGNADPR 290


>gi|315282425|ref|ZP_07870842.1| recombination factor protein RarA [Listeria marthii FSL S4-120]
 gi|313613930|gb|EFR87657.1| recombination factor protein RarA [Listeria marthii FSL S4-120]
          Length = 427

 Score =  149 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 71/322 (22%), Positives = 132/322 (40%), Gaps = 37/322 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+ L+E  GQ       K+     KA+   L  ++  GPPG+GKT++A  +A 
Sbjct: 5   PLAYRMRPKALDEIVGQTHLVGKDKIIYRMVKAKQ--LSSMILYGPPGIGKTSIASAIAG 62

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR+ +     K   ++ A    +    +L +DE+HRL    ++ L P +E   + 
Sbjct: 63  STKYAFRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQDFLLPLLESGAI- 121

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           +++G   S   + IN +    I + T++  L     +   I        ++   +  +RG
Sbjct: 122 ILIGATTSNPYIAINPA----IRSRTQIFELNPLTVEDIMI-------TMDRALSDKERG 170

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT--ITREIADAALLRL 253
                + + + A    A  S G  R A   L      +E  +     IT ++A+  L + 
Sbjct: 171 LGDYHVEIDEVAKKHFATASNGDVRSALNALELAVISSEPNNDGVIRITLDVAEECLQKK 230

Query: 254 --AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
             A DK G    D+  L+   ++  G  V              A+  +    +I+ G + 
Sbjct: 231 SLAHDKDGDAHYDV--LSAFQKSVRGSDV------------NAALHYMGR--LIEAGDLV 274

Query: 312 RTPRGRLLMPIAWQHLGIDIPH 333
              R R+L+ +A++ +G+  P 
Sbjct: 275 SISR-RMLV-MAYEDIGLANPQ 294


>gi|270340043|ref|ZP_06006828.2| replication-associated recombination protein A [Prevotella
           bergensis DSM 17361]
 gi|270332946|gb|EFA43732.1| replication-associated recombination protein A [Prevotella
           bergensis DSM 17361]
          Length = 424

 Score =  149 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 78/337 (23%), Positives = 128/337 (37%), Gaps = 67/337 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP+TL+++ GQ        V  +  +  +  +   +  GPPG+GKTTLAQ++A 
Sbjct: 4   PLAERLRPQTLDDYIGQEHVVGKDAVLRKMVE--SGRISSFILWGPPGVGKTTLAQIIAG 61

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAM 129
            L V F + S  V +   D+  ++   +          +LFIDEIHR S   ++ L  A+
Sbjct: 62  MLKVPFFTLSA-VTSGVKDVREVIERAKQGRFFNSGSPILFIDEIHRFSKSQQDSLLGAV 120

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E   + L+    E PS   ++  LSR  L    +                      E ED
Sbjct: 121 ERGVVTLIGATTENPSFEVIRPLLSRCQLYVLKS---------------------LEKED 159

Query: 188 LKTIVQRG------AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           L  I++R        K   + + +  A  I   S G  R    +L    +    A ++  
Sbjct: 160 LMKILERAIHEDSELKKKDIVLQEVGA--IMRYSGGDARKLLNILELAVNST--ASSQIT 215

Query: 242 TREIADAALLRL---AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             +     L++    A DK G    D+                   ISA +   R +  D
Sbjct: 216 ITDKLVEGLVQSNPLAYDKDGEMHYDI-------------------ISAFIKSIRGSDPD 256

Query: 299 LIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
               +M +       P+   R L+  A + +G+  P+
Sbjct: 257 AALYWMARMIEGGEDPQFIARRLIISAAEDIGLANPN 293


>gi|254477504|ref|ZP_05090890.1| AAA ATPase, central region [Ruegeria sp. R11]
 gi|214031747|gb|EEB72582.1| AAA ATPase, central region [Ruegeria sp. R11]
          Length = 444

 Score =  149 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 75/330 (22%), Positives = 124/330 (37%), Gaps = 58/330 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP++L E  GQ                 + +L  ++  GPPG+GKTT+A+++AR
Sbjct: 27  PLADRLRPQSLAEVIGQTHVLGPEAPL--GVMLASGSLSSLILWGPPGVGKTTIARLLAR 84

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
           E  ++F   S      P + K  + A +        +LF+DEIHR +   ++   P MED
Sbjct: 85  ETDLHFVQISAIFSGVPDLKKVFEAAKIRRQNGQGTLLFVDEIHRFNKAQQDGFLPHMED 144

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             + L+    E PS       LSR  ++                           + DL+
Sbjct: 145 GTILLVGATTENPSFELNAAVLSRSQVLVL---------------------ERLSLADLE 183

Query: 190 TIVQRGAKLTG--LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            + QR  +  G  L +  +A   +   + G  R+   L+ +V   A       +  E   
Sbjct: 184 RLTQRAEQELGRALPLLPDARDALHEMADGDGRMLLNLIEQV---AAWKVPAPLGAEALA 240

Query: 248 AALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           A L+R A   DK G +  +L                   ISA     R +  D    ++ 
Sbjct: 241 ARLMRRAAKYDKSGDEHYNL-------------------ISALHKSIRGSDPDAALYWLG 281

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +       PR   R L  ++ + +G+  P 
Sbjct: 282 RMLEGGEDPRYLARRLTMMSTEDIGLADPQ 311


>gi|291085633|ref|ZP_06353556.2| replication-associated recombination protein A [Citrobacter youngae
           ATCC 29220]
 gi|291070482|gb|EFE08591.1| replication-associated recombination protein A [Citrobacter youngae
           ATCC 29220]
          Length = 428

 Score =  149 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 70/321 (21%), Positives = 110/321 (34%), Gaps = 40/321 (12%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  L ++ GQ    +  K    A +A    L  ++  GPPG GKTTLA+V+AR    +
Sbjct: 1   MRPENLAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIARYANAD 58

Query: 82  FRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
               S        I +A + A    N   R +LF+DE+HR +   ++   P +ED  +  
Sbjct: 59  VERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 118

Query: 137 M--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           +    E PS       LSR  +    +        + D                 +   R
Sbjct: 119 IGATTENPSFELNSALLSRARVYLLKSLTTDDIEQVLD--------------QAMSDKAR 164

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
           G     + +  E    IA    G  R A   L  + D AEV  +     +      +   
Sbjct: 165 GYGDQDIVLPKETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKTELLTEIAGE 224

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
                 ++ D  Y               + ISA     R +  D    +  +       P
Sbjct: 225 RSARFDNKGDRFY---------------DLISALHKSVRGSAPDAALYWYARIITAGGDP 269

Query: 315 R--GRLLMPIAWQHLGIDIPH 333
               R  + IA + +G   P 
Sbjct: 270 LYVARRCLAIASEDVGNADPR 290


>gi|261821269|ref|YP_003259375.1| recombination factor protein RarA [Pectobacterium wasabiae WPP163]
 gi|261605282|gb|ACX87768.1| AAA ATPase central domain protein [Pectobacterium wasabiae WPP163]
          Length = 447

 Score =  149 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 72/331 (21%), Positives = 113/331 (34%), Gaps = 50/331 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP TL ++ GQ       K    A +A    L  ++  GPPG GKTTLA+++  
Sbjct: 15  PLAARMRPATLAQYIGQQHLLGAGKPLPRAIEAGQ--LHSMILWGPPGTGKTTLAELIGH 72

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
               +    S        I +A + A    N   R +LF+DE+HR +   ++   P +ED
Sbjct: 73  YGQADVERISAVTSGIKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED 132

Query: 132 FQLDLM--VGEGPSARSVKINLSR-----FTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
             +  +    E PS       LSR        + A     +L   + DR           
Sbjct: 133 GTITFIGATTENPSFELNSALLSRARVYLLKALTAEDIEQVLLQAMNDR----------- 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
                   +RG     +A+  E    +A    G  R A   L  + D AE+         
Sbjct: 182 --------ERGYGEQNIALPAETGRMLAELVNGDARRALNSLEMMADMAEIDAQGMRVLT 233

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
            A    +         ++ D  Y               + ISA     R +  D    + 
Sbjct: 234 PALLNEIAGERSARFDNKGDRYY---------------DLISALHKSVRGSAPDAALYWY 278

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +       P    R L+ IA + +G   P 
Sbjct: 279 ARIITAGGDPLYVARRLLAIASEDVGNADPR 309


>gi|254451290|ref|ZP_05064727.1| ATPase, AAA family [Octadecabacter antarcticus 238]
 gi|198265696|gb|EDY89966.1| ATPase, AAA family [Octadecabacter antarcticus 238]
          Length = 435

 Score =  149 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 71/328 (21%), Positives = 122/328 (37%), Gaps = 54/328 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP++L+E  GQ +               + +L  ++F GPPG+GKTT+A+++A 
Sbjct: 18  PLADRLRPKSLDEVIGQEQVLGPDAPL--GVMLSSGSLSSLIFWGPPGVGKTTIARLLAD 75

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
           E  ++F   S      P + K  + A +        +LF+DEIHR +   ++   P MED
Sbjct: 76  ETDLHFIQISAIFTGMPDLRKVFEAAKMRRANGKGTLLFVDEIHRFNKAQQDGFLPHMED 135

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             + L+    E PS       LSR  ++                  I  RL+  ++E + 
Sbjct: 136 GTILLVGATTENPSFELNSAVLSRSQVL------------------ILERLSLADLERMA 177

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
              ++      L +   A   +   + G  R    LL  +   A       +  +     
Sbjct: 178 QRAEKDLG-RKLPLDGPARENLLEMADGDGR---ALLNLIEQIAAWKVDGKLDTDALSTR 233

Query: 250 LLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           L++ A   DK G +  +L                   ISA     R +  D    +  + 
Sbjct: 234 LMKRAPRYDKSGDEHYNL-------------------ISALHKSVRGSDPDAALYWFARM 274

Query: 308 GFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                 PR   R +  +A + +G+  P 
Sbjct: 275 LKGGEDPRFLARRITRMAVEDIGLADPQ 302


>gi|307565626|ref|ZP_07628104.1| recombination factor protein RarA [Prevotella amnii CRIS 21A-A]
 gi|307345658|gb|EFN91017.1| recombination factor protein RarA [Prevotella amnii CRIS 21A-A]
          Length = 422

 Score =  149 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 69/331 (20%), Positives = 121/331 (36%), Gaps = 53/331 (16%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +     +RPR+L+++ GQ        V     +++   +   +  GPPG+GKTTLAQ++A
Sbjct: 2   EPLAERMRPRSLDQYIGQKHLVGKNGVLRRMIESKH--ISSFILWGPPGVGKTTLAQIIA 59

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPA 128
             L   F S S  V +   ++  ++   +          ++FIDEIHR S   ++ L  A
Sbjct: 60  NMLETPFYSVSA-VTSGVKEVREVIERAKGNRFFSTNSPIIFIDEIHRFSRAQQDSLLDA 118

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           +E   + L+    E PS   +   LSR  +                              
Sbjct: 119 VEKGIVTLIGATTENPSFEVITPLLSRCQIYTLKNLEDDDLL----------------SL 162

Query: 187 DLKTIVQRG-AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
             + I + G  K   + + +  A  I   S G  R    +L  +       + K     +
Sbjct: 163 LYRAIKEDGELKKRNIEIVETCA--ILRYSGGDARKLLNILDLIVSSTLEDNIKITDEMV 220

Query: 246 ADAALL-RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
            +  L   L+ DK G    D+                   ISA +   R +  D    ++
Sbjct: 221 ENQLLQPVLSYDKAGDMHYDI-------------------ISAFIKSIRGSDPDAAIYWL 261

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +       P+   R L+  A + +G+  P+
Sbjct: 262 ARMIEGGEDPKFIARRLVICAAEDIGLANPN 292


>gi|90407805|ref|ZP_01215982.1| putative ATPase protein [Psychromonas sp. CNPT3]
 gi|90311070|gb|EAS39178.1| putative ATPase protein [Psychromonas sp. CNPT3]
          Length = 439

 Score =  149 bits (376), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 77/334 (23%), Positives = 121/334 (36%), Gaps = 49/334 (14%)

Query: 11  NVSQE-DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           ++S E     + +RP+  +++ GQ       K   +A +A   A   ++  GPPG GKTT
Sbjct: 6   DISNEFQPLAARMRPKNFDQYIGQTHIVGVGKPLRKALEA--GAAHSMILWGPPGTGKTT 63

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEE 123
           LA+++A     +    S  V A   D+ A +   +       R +LF+DE+HR +   ++
Sbjct: 64  LAELIAHYCDAHVERLSA-VTAGIKDIRAAIEIGKQNQSRGMRTLLFVDEVHRFNKTQQD 122

Query: 124 ILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
              P +ED  L  +    E PS       LSR        RV LL    +D     I   
Sbjct: 123 AFLPFIEDGTLLFIGATTENPSFELNNALLSR-------ARVYLLKKLSEDEIVEVIDQ- 174

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
                      Q G K   L        ++A+  +G  R A   L  + D A       I
Sbjct: 175 -------ACHAQDGLKAHNLHFAQGVKEKLALLVQGDARKALNYLELLSDMAI---EGEI 224

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           + +     LL     + G                  G +  + ISA     R +  D   
Sbjct: 225 SLD-----LLMQIAGREG------------VSFDKKGDLFYDLISAFHKSVRGSDVDGAL 267

Query: 302 PYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +  +       P    R L+ IA + +G   P 
Sbjct: 268 YWYARMLGGGCDPLYVARRLLAIASEDIGNADPR 301


>gi|332884949|gb|EGK05204.1| hypothetical protein HMPREF9456_03117 [Dysgonomonas mossii DSM
           22836]
          Length = 422

 Score =  149 bits (376), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 73/333 (21%), Positives = 123/333 (36%), Gaps = 59/333 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRPR LEE+ GQ        +  +  +  +  +   L  GPPG+GKTTLAQ++A 
Sbjct: 4   PLAERLRPRNLEEYIGQKHLVGEGAILRKMIE--SGRVPSFLLWGPPGVGKTTLAQIIAN 61

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAM 129
            L   F + S  + +   D+  ++   +          +LFIDEIHR S   ++ L  A+
Sbjct: 62  TLDTPFYTLSA-INSGVKDVREVIELAKKNQFFNTKSPILFIDEIHRFSKSQQDSLLGAV 120

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRF---GIPIRLNFYE 184
           E   + L+    E PS   ++  LSR  +    +        L  R     I ++    E
Sbjct: 121 ETGVITLIGATTENPSFEVIRPLLSRCQVYVLQSLGKEDLEELAHRALTQDIILKDRDIE 180

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +++   I++                          R    +L  V   +E     +IT +
Sbjct: 181 LKETDAILRFSGG--------------------DARKLLNILDLVI-SSETNDKISITDK 219

Query: 245 IADAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           +    L     A DK G    D+                   ISA +   R +  D    
Sbjct: 220 LVTERLQENPAAYDKGGEMHYDI-------------------ISAFIKSIRGSDPDAAIY 260

Query: 303 YMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           ++ +       P+   R L+  A + +G+  P+
Sbjct: 261 WLARMVAGGEDPKFIARRLVISAAEDIGLANPN 293


>gi|238920372|ref|YP_002933887.1| recombination factor protein RarA [Edwardsiella ictaluri 93-146]
 gi|238869941|gb|ACR69652.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 447

 Score =  149 bits (376), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 76/347 (21%), Positives = 119/347 (34%), Gaps = 52/347 (14%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M +     S+N  Q     + +RP TLE++ GQ    +  K    A  A    L  ++  
Sbjct: 1   MSNLSLDFSQNAFQ--PLAARMRPATLEQYIGQRHLLAAGKPLPRAILAGH--LHSMILW 56

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIH 115
           GPPG GKTTLA+++AR         S        I +A + A    +   R +LF+DE+H
Sbjct: 57  GPPGTGKTTLAELIARYGHAEVERISAVTSGIKEIREAIERARHNRDAGRRTILFVDEVH 116

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSR-----FTLIAATTRVGLLTN 168
           R +   ++   P +ED  +  +    E PS       LSR        + A   V ++  
Sbjct: 117 RFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKALDAQDIVQVVRQ 176

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            + DR                   +RG     + +  E    +A    G  R A   L  
Sbjct: 177 AMTDR-------------------ERGYGGQDVTLPTETLDALAELVNGDARRALNTLEM 217

Query: 229 VRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAG 288
           + D AE          +     +         +  D  Y               + ISA 
Sbjct: 218 MADMAETDAQGQRVLTLDLLRSVSGERSARFDNHGDRYY---------------DLISAL 262

Query: 289 LSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
               R +  D    +  +       P    R L+ IA + +G   P 
Sbjct: 263 HKSVRGSAPDAALYWYARIITAGGDPLYVARRLLAIASEDVGNADPR 309


>gi|157369928|ref|YP_001477917.1| recombination factor protein RarA [Serratia proteamaculans 568]
 gi|157321692|gb|ABV40789.1| AAA ATPase central domain protein [Serratia proteamaculans 568]
          Length = 447

 Score =  149 bits (376), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 71/337 (21%), Positives = 119/337 (35%), Gaps = 42/337 (12%)

Query: 8   LSRNVSQED--ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           +S + SQ +     + +RP TL ++ GQ    +  K    A +A    L  ++  GPPG 
Sbjct: 4   MSLDFSQNEFQPLAARMRPTTLAQYIGQQHLLAAGKPLPRAIEAGQ--LHSMILWGPPGT 61

Query: 66  GKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GKTTLA+++ R    +    S        I +A + A    +   R +LF+DE+HR +  
Sbjct: 62  GKTTLAELIGRYGQADVERISAVTSGIKEIREAIERARQNRDAGRRTILFVDEVHRFNKS 121

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++   P +ED  +  +    E PS       LSR  +           + + D      
Sbjct: 122 QQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKALTAEDISQVLD------ 175

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
                          RG     + + +E    ++    G  R A   L  + D AE+   
Sbjct: 176 --------QAMQDSSRGFGGQNIELPEETRRMLSELVGGDARRALNSLEMMADMAEINAK 227

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
                      L  ++ ++              AR    G    + ISA     R +  D
Sbjct: 228 GIRVLTPEL--LKEVSGERS-------------ARFDNKGDRFYDLISALHKSVRGSAPD 272

Query: 299 LIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
               +  +       P    R L+ IA + +G   P 
Sbjct: 273 AALYWYARIITAGGDPLYVARRLLAIASEDVGNADPR 309


>gi|83949758|ref|ZP_00958491.1| ATPase, AAA family protein [Roseovarius nubinhibens ISM]
 gi|83837657|gb|EAP76953.1| ATPase, AAA family protein [Roseovarius nubinhibens ISM]
          Length = 437

 Score =  149 bits (376), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 76/330 (23%), Positives = 122/330 (36%), Gaps = 58/330 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
               L+RP++L E  GQ +                 +L  ++  GPPG+GKTT+A+++A 
Sbjct: 21  PLADLMRPQSLGEVIGQEQVLGPEAPL--GVMLENGSLGSLILWGPPGVGKTTIARLLAA 78

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
           E  ++F   S      P + K  + A +        +LF+DEIHR +   ++   P MED
Sbjct: 79  ETDLHFVQISAIFTGVPELRKVFEEARMRHGNGRGTLLFVDEIHRFNKAQQDGFLPHMED 138

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             + L+    E PS       LSR  ++                             DL+
Sbjct: 139 GTILLVGATTENPSFELNAALLSRAQVLVLERLANR---------------------DLE 177

Query: 190 TIVQRGAKLTG--LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            +VQR  K+    L +T EA   +   + G  R    LL  V        A+ +  E   
Sbjct: 178 RLVQRAEKMMDRALPLTGEAREVLLDMADGDGR---ALLNLVEQVMAWKSAQKLDPEALS 234

Query: 248 AALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
             L++ A   DK G +  +L                   ISA     R +  D    +  
Sbjct: 235 KRLMKRASVYDKNGEEHYNL-------------------ISALHKSVRGSDPDAALYWFA 275

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +       PR   R +  +A + +G+  P 
Sbjct: 276 RMLKGGEDPRYLARRITRMAVEDIGLADPQ 305


>gi|110804893|ref|YP_688413.1| recombination factor protein RarA [Shigella flexneri 5 str. 8401]
 gi|110614441|gb|ABF03108.1| putative polynucleotide enzyme [Shigella flexneri 5 str. 8401]
          Length = 447

 Score =  149 bits (376), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 72/331 (21%), Positives = 115/331 (34%), Gaps = 50/331 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP  L ++ GQ    +  K    A +A    L  ++  GPPG GKTTLA+V+AR
Sbjct: 15  PLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIAR 72

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
               +    S        I +A + A    N   R  LF+DE+HR +   ++   P +ED
Sbjct: 73  YANADVERISAVTSGVKEIREAIERARQNRNAGRRTSLFVDEVHRFNKSQQDAFLPHIED 132

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATT-----RVGLLTNPLQDRFGIPIRLNFYE 184
             +  +    E PS       LSR  +    +        +LT  ++D+           
Sbjct: 133 GTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDK----------- 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
                    RG     + + D+    IA    G  R A   L  + D AEV  +     +
Sbjct: 182 --------TRGYGGQDIVLPDDTRRAIAELVNGDARRALNTLEMMADMAEVYDSGKRVLK 233

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
                 +         ++ D  Y               + ISA     R +  D    + 
Sbjct: 234 PELLTEIAGERSARFDNKGDRFY---------------DLISALHKSVRGSAPDAALYWY 278

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +       P    R  + IA + +G   P 
Sbjct: 279 ARIITAGGDPLYVARRCLAIASEDVGNADPR 309


>gi|317481683|ref|ZP_07940716.1| ATPase [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916862|gb|EFV38251.1| ATPase [Bifidobacterium sp. 12_1_47BFAA]
          Length = 459

 Score =  149 bits (376), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 87/362 (24%), Positives = 130/362 (35%), Gaps = 69/362 (19%)

Query: 2   MDREGLLSRNVSQED---ADISLLRPRTLEEFTGQVEACSNLKVFIE----AAKARAEAL 54
           M    L     + E         +RPRTL+E  GQ +              A+K    A 
Sbjct: 1   MSENDLFGAADAPESMTRPLAVRMRPRTLDEVIGQTQVLGQGSPLRRLANPASKGSLTAP 60

Query: 55  DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------D 107
             V+  GPPG+GKTTLA +VA + G  F   S  V +   D+  +LT   +R        
Sbjct: 61  SSVILFGPPGVGKTTLATIVAGQSGRVFEELSA-VTSGVKDVRDVLTRAHERLVSRGQET 119

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGL 165
           VLFIDE+HR S   ++ L PA+E+  +  +    E PS   +K  LSR  ++   +    
Sbjct: 120 VLFIDEVHRFSKSQQDALLPAVENRDVTFIGATTENPSFSIIKPLLSRSVVVKLESLEPD 179

Query: 166 -----LTNPLQDRFGIPIRLNFYEIEDLKTIV-------QRGAKLTGLAVTDEAACEIAM 213
                +   L D  G+   +     E +  IV       ++   +   A       E   
Sbjct: 180 QLTELVQRALTDDRGLRDEVKA-TDEAIADIVRMAGGDARKSLTILEAAAGAVTGDEARK 238

Query: 214 RSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIAR 273
           +    P I   ++  V D A V                    DK G D  D+        
Sbjct: 239 KGARRPIITSEIVATVMDTATVR------------------YDKDGDDHYDV-------- 272

Query: 274 NFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
                      ISA +   R +  D    Y+ +       PR   R +M  A + +G+  
Sbjct: 273 -----------ISAFIKSMRGSDPDAAIHYLARMLKAGEDPRFIARRIMIAASEEVGMAA 321

Query: 332 PH 333
           P 
Sbjct: 322 PQ 323


>gi|328876848|gb|EGG25211.1| putative helicase [Dictyostelium fasciculatum]
          Length = 795

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 67/330 (20%), Positives = 120/330 (36%), Gaps = 52/330 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP T++EF GQ E        I       + +   +  GPPG GKTTLA+++A+
Sbjct: 260 PLAEKMRPTTMKEFIGQHELMDQ--SLISTLFKSGD-MPSCIIWGPPGCGKTTLARLIAK 316

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAME 130
               +    S  V +   D+   +   +       + +LFIDEIHR S + ++ L P +E
Sbjct: 317 NSSSHIIMMSA-VGSGVADIKKHVQEAQNSLAFGKKTILFIDEIHRFSKLQQDALLPPVE 375

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +  + L+    E PS       LSR        RV  LT    D     ++         
Sbjct: 376 NGIVTLIGATTENPSFEVNNALLSRC-------RVFTLTKLTTDNIAAILKRAIETSNQY 428

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             +         + + +     +A  + G  R A  ++  V    + +  +++T E    
Sbjct: 429 AQV--------KIKIEESTLMSLAELADGDARSALNVIDMVLKGIKNSGKESMTIEREHL 480

Query: 249 ALLRLAI----DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
             L        DK G    +   ++ + +   G      T                  ++
Sbjct: 481 GGLMQRASLQNDKNGESHYN--MISALHKCIRGSDANAAT-----------------YWL 521

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
            +       PR  GR ++ +A + +G+  P
Sbjct: 522 TRMLKSGSDPRFLGRRMIRMASEDIGLADP 551


>gi|225464722|ref|XP_002264062.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 534

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 65/346 (18%), Positives = 116/346 (33%), Gaps = 40/346 (11%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           L    S        +RPRT+++  GQ    S+  +   A    +  L  ++  GPPG GK
Sbjct: 99  LEAENSPHQPLSERMRPRTVDDVVGQDHLLSHKSLLRSAI--DSNRLPSIILWGPPGTGK 156

Query: 68  TTLAQVVARELGVNFRSTS---GPVIAKAGDLAALLTNLED----------RDVLFIDEI 114
           T++A+ +                 V A   D+  ++               R +LF+DE+
Sbjct: 157 TSIAKAIVNSSSQPSSYRFVSLSAVTAGVKDVRDVVEEARKIKVSKNMNSKRTLLFVDEV 216

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++   P +ED  +  +    E PS   +   LSR  ++            L +
Sbjct: 217 HRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLQPSHVASLLN 276

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R           + D    +        + V+D+A   ++    G  R+A   L      
Sbjct: 277 R----------AVADTGRGLAWSVGGASIEVSDDAIDFLSSHCDGDARVALNALEISAVT 326

Query: 233 AEVAHAKTITREI----ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAG 288
           A   H + +        +    + L   K       L Y      ++         ISA 
Sbjct: 327 AAARHGENLVENNGVGSSQVTTVTLDDAKEALQSKHLAYDKAGEEHY-------NLISAL 379

Query: 289 LSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
               R +  D    ++ +       P    R L+  A + +G+  P
Sbjct: 380 HKSMRGSDADASIYWLARMLEGGEEPLYIARRLIRFASEDVGLADP 425


>gi|315924180|ref|ZP_07920406.1| replication-associated recombination protein A [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315622582|gb|EFV02537.1| replication-associated recombination protein A [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 449

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 77/343 (22%), Positives = 127/343 (37%), Gaps = 51/343 (14%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           +     N +  +   + +RP TL  F GQ +     K+      A  + L   +F GPPG
Sbjct: 7   DRTFEDNQAANEPLTARMRPETLAHFYGQDQIVGKGKLLTRLITA--DKLTSAIFYGPPG 64

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRL 117
            GKTTLA+++A +    F S +  V +   +++ ++            + +LFIDE+HR 
Sbjct: 65  TGKTTLAKIIASQTKAAFHSLNA-VTSGKKEISEVIAEARQNMAFYGRKTILFIDEVHRF 123

Query: 118 SIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
           +   ++ L P++ED  + L+    E P        +SR T+           NPL D   
Sbjct: 124 NKAQQDALLPSVEDGLIILIGATTENPYFEINAALISRSTIFEF--------NPLSDAAI 175

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
             I      ++D  T  ++G     + +TD A   +   + G  R A   L      A+ 
Sbjct: 176 ETI------LKDALTDSEKGYGQMRVELTDAARKHLVSVANGDVRKALNALELAVLTADK 229

Query: 236 AHAKTITRE----IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
                I               L  DK G +  D                   TISA +  
Sbjct: 230 TPEGKILINLEVVQECIRTKALQYDKNGDNHYD-------------------TISAFIKS 270

Query: 292 PRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
            R +  D    +M +       P    R ++  A + +G   P
Sbjct: 271 IRGSDPDAALFWMAKMIEAGEDPGFIARRMVISASEDIGNAEP 313


>gi|222148826|ref|YP_002549783.1| recombination factor protein RarA [Agrobacterium vitis S4]
 gi|221735812|gb|ACM36775.1| ATPase AAA family protein [Agrobacterium vitis S4]
          Length = 435

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 73/339 (21%), Positives = 122/339 (35%), Gaps = 57/339 (16%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           L  +++        LRP+ L + TGQ        V        + +L  ++F GPPG GK
Sbjct: 9   LDEDMAARRPLADRLRPKALSDVTGQDHLTGQDGVLARMI--ASGSLGSMIFWGPPGTGK 66

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIV 121
           TT+A++++ E  + F   S  + +   DL  +            + +LF+DEIHR +   
Sbjct: 67  TTVARLLSGEADLAFEQISA-IFSGVADLKRVFEGARARRMSGRQTLLFVDEIHRFNRAQ 125

Query: 122 EEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           ++   P MED  + L+    E PS       LSR                        + 
Sbjct: 126 QDSFLPVMEDGTVILVGATTENPSFELNAALLSR---------------------ARVLT 164

Query: 180 LNFYEIEDLKTIVQRGA--KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
              ++ E ++T+++R    +   L + + A   +   + G  R A  L   V   A    
Sbjct: 165 FKPHDEESIETLLKRAEATEEKPLPLDEPARTSLIRMADGDGRAALTLAEEVWRAAR--- 221

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVG-IETISAGLSEPRDAI 296
                             D  G      R +   A  +  G  G    ISA     R + 
Sbjct: 222 -------------QGEVFDTEGLT----RIVQRRAPVYDKGQDGHYNLISALHKSVRGSD 264

Query: 297 EDLIEPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
            D    Y+ +       P   GR L+ +A + +G+  P 
Sbjct: 265 PDAALYYLCRMFDAGEDPLYLGRRLVRMAVEDIGLADPQ 303


>gi|260468527|ref|ZP_05813694.1| AAA ATPase central domain protein [Mesorhizobium opportunistum
           WSM2075]
 gi|259028683|gb|EEW29992.1| AAA ATPase central domain protein [Mesorhizobium opportunistum
           WSM2075]
          Length = 435

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 77/344 (22%), Positives = 123/344 (35%), Gaps = 52/344 (15%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M D   +     +     ++  LRP+ L E  GQ                 + +L  ++F
Sbjct: 1   MADLFSVDEPEKTPPGRPLADRLRPKNLGEVVGQEHLTGPDGALTRLI--GSGSLGSMIF 58

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEI 114
            GPPG GKTT+A+++A E  + F   S        + K  + A L      + +LF+DEI
Sbjct: 59  WGPPGTGKTTVARLLAGETSLAFEQISAVFSGVADLKKVFEAAKLRRANGRQTLLFVDEI 118

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++   P MED  + L+    E PS       LSR                   
Sbjct: 119 HRFNRAQQDSFLPVMEDGTVVLVGATTENPSFELNAALLSR------------------- 159

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
                +  +    E +  ++ R             A E   R+      A  +L R+ D 
Sbjct: 160 --ARVMVFHSLGEESIAKLMTR-------------AEETEGRALPLDDEARTMLIRMSD- 203

Query: 233 AEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVG-IETISAGLSE 291
            +   + T+  E+  AA      D  G      R +   A  +  G  G    ISA    
Sbjct: 204 GDGRASLTLAEEVWRAAKPDEVFDPEGLQ----RIVQRRAPIYDKGQDGHYNLISALHKS 259

Query: 292 PRDAIEDLIEPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
            R +  D    Y+ +       P   GR L+ +A + +G+  P 
Sbjct: 260 VRGSDPDAALYYLARMFDAGEDPLYLGRRLVRMAMEDIGLADPQ 303


>gi|266624899|ref|ZP_06117834.1| replication-associated recombination protein A [Clostridium
           hathewayi DSM 13479]
 gi|288863218|gb|EFC95516.1| replication-associated recombination protein A [Clostridium
           hathewayi DSM 13479]
          Length = 440

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 78/345 (22%), Positives = 129/345 (37%), Gaps = 51/345 (14%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M++  L   + +      S LRP  LEEF GQ       KV         + +  ++F G
Sbjct: 1   MEQLSLFD-DRAAVGPLASRLRPTGLEEFVGQKHLLGEGKVLRRIIDQ--DMVCSMIFWG 57

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIH 115
           PPG+GKTTLA+++A     +F   S  V +   ++  ++   E       R ++F+DEIH
Sbjct: 58  PPGVGKTTLARIIANRTKASFVDFSA-VTSGIKEIKEVMAQAERDRHMGLRTLVFVDEIH 116

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P +E   + L+    E PS       LSR        +V +L     D 
Sbjct: 117 RFNKAQQDAFLPYVEKGSIILIGATTENPSFEINAALLSRC-------KVFVLQALQTDD 169

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
             I +                G     + +T++    IA  + G  R A   L       
Sbjct: 170 LVILLHHALTSPL--------GLGDQRIGITEDMLRMIAQFANGDARTALNTLEMAVLNG 221

Query: 234 EV-AHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
           E+ A   T+T E+ +    R +   DK G +  +L                   ISA   
Sbjct: 222 EISAEETTVTPEVLEQCTSRKSLLYDKNGEEHYNL-------------------ISAFHK 262

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
             R++  D    ++ +       P    R L+  A + +G+    
Sbjct: 263 SMRNSDPDAALYWLARMLEAGEDPLYVARRLIRFASEDIGMADSQ 307


>gi|77919922|ref|YP_357737.1| recombination factor protein RarA [Pelobacter carbinolicus DSM
           2380]
 gi|77546005|gb|ABA89567.1| Recombination protein MgsA [Pelobacter carbinolicus DSM 2380]
          Length = 432

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 75/331 (22%), Positives = 119/331 (35%), Gaps = 58/331 (17%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +RPRTLEE  GQ       KV     +  ++ L  V+F GPPG GKTT+AQV+A   
Sbjct: 17  AERMRPRTLEEMVGQQHLIGTDKVLRRLIE--SDRLSSVIFWGPPGTGKTTMAQVIAGST 74

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131
              F   S  V+    ++  ++    +       + +LF+DEIHR +   ++   P +E 
Sbjct: 75  RSRFVFFSA-VLQGIKEVREIVKKAREERAYHNRKTLLFVDEIHRFNKAQQDAFLPYVEK 133

Query: 132 FQLDLM--VGEGPSARSVKINLSR-----FTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
             + L+    E PS       LSR        + A     LL   L D  G+  +    +
Sbjct: 134 GDITLIGATTENPSFEINSALLSRSRVFVLQPLDAADIAQLLQRALTDSRGLDNKFPETD 193

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            E L  +                    A +++G  R+A   L    D +     + IT +
Sbjct: 194 SETLAFL--------------------AGQAQGDARVALNALEVAADLS--KEQRAITLQ 231

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
               AL +                    R   G       ISA +   R +  D    ++
Sbjct: 232 AVKDALQQRG-----------------IRYDKGAEEHYNVISAFIKSLRGSDPDAALYWL 274

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +       P    R ++  A + +G   P 
Sbjct: 275 ARMIEAGEDPLFIARRMVIFAAEDVGNADPR 305


>gi|163740269|ref|ZP_02147663.1| recombination protein [Phaeobacter gallaeciensis 2.10]
 gi|161386127|gb|EDQ10502.1| recombination protein [Phaeobacter gallaeciensis 2.10]
          Length = 440

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 76/330 (23%), Positives = 123/330 (37%), Gaps = 58/330 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP++L E  GQ +               + +L  ++F GPPG+GKTT+A+++AR
Sbjct: 23  PLADRLRPQSLAEVIGQAQVLGEDAPL--GVMLASGSLSSLIFWGPPGVGKTTIARLLAR 80

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
           E  ++F   S      P + K  + A +        +LF+DEIHR +   ++   P MED
Sbjct: 81  ETDLHFVQISAIFTGVPDLKKVFEAAKIRRQNGQGTLLFVDEIHRFNKAQQDGFLPHMED 140

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             + L+    E PS       LSR  ++                           + DL+
Sbjct: 141 GTILLVGATTENPSFELNAAVLSRAQVLVL---------------------ERLSLADLE 179

Query: 190 TIVQRGAKLTG--LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            + QR  +     L +T +A   +   + G  R    L+ +V   A       + RE   
Sbjct: 180 RLTQRAEQELDRALPLTADARDALQEMADGDGRALLNLIEQV---AAWKVDSPLGREALA 236

Query: 248 AALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
             L+R A   DK G +  +L                   ISA     R +  D    +  
Sbjct: 237 TRLMRRAAKYDKSGDEHYNL-------------------ISALHKSVRGSDPDAALYWFA 277

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +       PR   R L  +A + + +  P 
Sbjct: 278 RMLEGGEDPRYLARRLTRMAVEDIALADPQ 307


>gi|183598337|ref|ZP_02959830.1| hypothetical protein PROSTU_01729 [Providencia stuartii ATCC 25827]
 gi|188020513|gb|EDU58553.1| hypothetical protein PROSTU_01729 [Providencia stuartii ATCC 25827]
          Length = 447

 Score =  149 bits (375), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 71/337 (21%), Positives = 117/337 (34%), Gaps = 42/337 (12%)

Query: 8   LSRNVSQED--ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           LS + SQ +     + +RP  LE++ GQ    +  K    A KA    L  ++  GPPG 
Sbjct: 4   LSLDFSQNEFQPLAARMRPEVLEQYIGQKHLLAEGKPLPRAIKAGH--LHSMILWGPPGT 61

Query: 66  GKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GKTTLA+++      +    S        I +A + A    +   R +LF+DE+HR +  
Sbjct: 62  GKTTLAEIIGHYAQADIERISAVTSGIKEIREAIEKARQNRDAGRRTILFVDEVHRFNKS 121

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++   P +ED  +  +    E PS       LSR  +    +              + +
Sbjct: 122 QQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKS--------------LTV 167

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
                 ++      +RG     + + D     IA    G  R +  LL  + D AE    
Sbjct: 168 SDIEDVLQQAMEDPKRGLGGQNVILPDTTRQLIAELVNGDARRSLNLLEMMADMAETDSH 227

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
                       +         ++ D  Y               + ISA     R +  D
Sbjct: 228 GQRILTAELLKEVSGERTARFDNKGDRYY---------------DLISALHKSVRGSAPD 272

Query: 299 LIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
               +  +       P    R L+ IA + +G   P 
Sbjct: 273 AALYWYARIITAGGDPLYVARRLLAIASEDVGNADPR 309


>gi|212550412|ref|YP_002308729.1| hypothetical protein CFPG_055 [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212548650|dbj|BAG83318.1| conserved hypothetical protein [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 438

 Score =  149 bits (375), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 66/327 (20%), Positives = 122/327 (37%), Gaps = 45/327 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           +    +RP++L +F GQ        +     +   E +   +  GPPG+GKTTLA++++ 
Sbjct: 17  SLAERMRPQSLNDFFGQKHLVGEGSILRRMIE--GEYISSFILWGPPGVGKTTLARIISN 74

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAM 129
           ++ + F   S  V +   D+  ++   +D       R +LFIDEIHR S   ++ L  A+
Sbjct: 75  QMNIPFFMLSA-VNSGLKDIGKVIDKAKDVRFFNGVRPILFIDEIHRFSKSQQDFLLTAV 133

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ED  + L+    E PS   ++  LSR  +             L               + 
Sbjct: 134 EDRTIILIGATTENPSFEVIRPLLSRCQVYVLKNLQNEDLLALM-------------HKA 180

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           LK       +   + V +  A      + G  R    +L  V +  +    ++       
Sbjct: 181 LKED--NQLRKYRIEVAETTAL--LHFANGDARKLLNILELVVEVEKGRVEESSIIITNS 236

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
                L  + + +D               G  +  + ISA +   R +  D    ++ + 
Sbjct: 237 IVGNYLQENFVAYD--------------KGKEIHYDIISAFIKSIRGSDPDAAVYWLARM 282

Query: 308 GFIQRTPR--GRLLMPIAWQHLGIDIP 332
                 P+   R L+  A + +G+  P
Sbjct: 283 IAGGEDPKFIARRLIITASEDIGLANP 309


>gi|229098871|ref|ZP_04229807.1| hypothetical protein bcere0020_40950 [Bacillus cereus Rock3-29]
 gi|229117896|ref|ZP_04247258.1| hypothetical protein bcere0017_41660 [Bacillus cereus Rock1-3]
 gi|228665553|gb|EEL21033.1| hypothetical protein bcere0017_41660 [Bacillus cereus Rock1-3]
 gi|228684544|gb|EEL38486.1| hypothetical protein bcere0020_40950 [Bacillus cereus Rock3-29]
          Length = 428

 Score =  149 bits (375), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 77/327 (23%), Positives = 124/327 (37%), Gaps = 43/327 (13%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           +      +RP  ++E  GQ       K+     +A       ++  GPPG GKT++A  +
Sbjct: 2   KQPLAHRMRPTNIQEIIGQQHLVGEGKILRRMVQANH--FQSMILYGPPGTGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           A   G  FR  +  V     D+  ++   +     VL +DE+HRL    ++ L P +E  
Sbjct: 60  AGSTGTPFRLLNA-VTHNKKDMEVVVQEAKMHQHLVLILDEVHRLDKAKQDFLLPHLESG 118

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
            L L+      P         SR        ++  L    +D   I ++    + E    
Sbjct: 119 LLTLIGATTSNPFHAINSAIRSRC-------QIFELHALTEDDILIGLKRALEDKE---- 167

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR--DFAEVAHAKTITREIADA 248
              +G     + VTD A    A  S G  R A   L       F     A  IT EIA+ 
Sbjct: 168 ---KGLGEYDVTVTDGALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEE 224

Query: 249 ALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
            L + +   DK G    D+  L+   ++  G  V              A+  L    +I+
Sbjct: 225 CLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDV------------NAALHYLAR--LIE 268

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            G +Q    GR L+ +A++ +G+  P 
Sbjct: 269 AGDLQSI--GRRLLIMAYEDIGLASPQ 293


>gi|23464657|ref|NP_695260.1| recombination factor protein RarA [Bifidobacterium longum NCC2705]
 gi|23325217|gb|AAN23896.1| widely conserved hypothetical protein with possible helicase and
           ATP binding domains [Bifidobacterium longum NCC2705]
          Length = 459

 Score =  149 bits (375), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 87/362 (24%), Positives = 130/362 (35%), Gaps = 69/362 (19%)

Query: 2   MDREGLLSRNVSQED---ADISLLRPRTLEEFTGQVEACSNLKVFIE----AAKARAEAL 54
           M    L     + E         +RPRTL+E  GQ +              A+K    A 
Sbjct: 1   MSENDLFGAADAPESMTRPLAVRMRPRTLDEVIGQTQVLGQGSPLRRLANPASKGSLTAP 60

Query: 55  DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------D 107
             V+  GPPG+GKTTLA +VA + G  F   S  V +   D+  +LT   +R        
Sbjct: 61  SSVILFGPPGVGKTTLATIVAGQSGRVFEELSA-VTSGVKDVRDVLTRAHERLVSRGRET 119

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGL 165
           VLFIDE+HR S   ++ L PA+E+  +  +    E PS   +K  LSR  ++   +    
Sbjct: 120 VLFIDEVHRFSKSQQDALLPAVENRDVTFIGATTENPSFSIIKPLLSRSVVVKLESLEPD 179

Query: 166 -----LTNPLQDRFGIPIRLNFYEIEDLKTIV-------QRGAKLTGLAVTDEAACEIAM 213
                +   L D  G+   +     E +  IV       ++   +   A       E   
Sbjct: 180 QLTELVQRALTDDRGLRGEVKA-TDEAIADIVRMAGGDARKSLTILEAAAGAVTGDEARK 238

Query: 214 RSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIAR 273
           +    P I   ++  V D A V                    DK G D  D+        
Sbjct: 239 KGARRPIITSEIVATVMDTATVR------------------YDKDGDDHYDV-------- 272

Query: 274 NFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
                      ISA +   R +  D    Y+ +       PR   R +M  A + +G+  
Sbjct: 273 -----------ISAFIKSMRGSDPDAAIHYLARMLKAGEDPRFIARRIMIAASEEVGMAA 321

Query: 332 PH 333
           P 
Sbjct: 322 PQ 323


>gi|86157157|ref|YP_463942.1| recombination factor protein RarA [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85773668|gb|ABC80505.1| Recombination protein MgsA [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 437

 Score =  149 bits (375), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 80/345 (23%), Positives = 122/345 (35%), Gaps = 51/345 (14%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD       +          +RPR LE+F GQ            + +A  + +  ++  G
Sbjct: 1   MDLFDRAVADDPSGKPLAERMRPRRLEDFAGQEHVLGPGTALRRSIEA--DQVPSLILWG 58

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEI 114
           PPG GKTTLA++VA+  G +F   S  V+    ++  ++            R +LF+DEI
Sbjct: 59  PPGTGKTTLARIVAQRTGADFVPFSA-VLGGVKEIREIVAAARDRRRMHRKRTILFVDEI 117

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++   P +ED  + L+    E PS       LSR  +             L D
Sbjct: 118 HRFTRAQQDAFLPHVEDGTITLIGATTENPSFEVNAALLSRCRVATLRALTEDEVAALLD 177

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R            E L   V         A+  EA   IA  S G  R A   L      
Sbjct: 178 RATAA-------PEGLAGAV---------ALAPEARDTIARLSYGDARKALNALEVSAAA 221

Query: 233 AEVAHAKTITREIADAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
             +A    + +  A+ AL       DK G +                       +SA + 
Sbjct: 222 VRLAGRPAVEKADAEEALQARTVNYDKQGEEHY-------------------NVVSAFIK 262

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPRG--RLLMPIAWQHLGIDIPH 333
             R +  D    YM++       PR   R ++  A + +G   P 
Sbjct: 263 SLRGSDPDAAVYYMVRMLEAGEDPRFVLRRMVIFASEDVGNADPQ 307


>gi|206891135|ref|YP_002249330.1| ATP/GTP-binding domain protein [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|206743073|gb|ACI22130.1| ATP/GTP-binding domain protein [Thermodesulfovibrio yellowstonii
           DSM 11347]
          Length = 414

 Score =  149 bits (375), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 78/341 (22%), Positives = 130/341 (38%), Gaps = 41/341 (12%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D     S     E      + PR L+E+ GQ    S  K+   A    ++ +  ++  
Sbjct: 1   MSDLFDSPSETYKTE-PLAYRMAPRNLDEYVGQSHIISEGKLLRRAI--DSDKITSLILY 57

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIH 115
           GPPG GKT LA+++A +    F+  +        I K   LA    +  ++ +LFIDEIH
Sbjct: 58  GPPGTGKTALARIIANKTKAYFQWLNATTLNIEEIRKQVSLAKQRLSRGEKTILFIDEIH 117

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           RL+ I ++ L P +E+  + L+    E P        LSR  +            PL ++
Sbjct: 118 RLNRISQDALLPDIEEGTIILIGATIENPFFYLNSALLSRSHVFEL--------KPLTEQ 169

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
             I I      ++      +RG     + +T EA   +A  S G  R A   L       
Sbjct: 170 EIITI------LKRAIVDTERGFGSLKVEITSEALSHLAKSSDGDARKALSALEIAVLTT 223

Query: 234 EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
           E      I  +I  A        +    +  + Y      ++       +T SA +   R
Sbjct: 224 EPDKEGVIRIDIKVA--------EESIQKKHIVYDRAGDEHY-------DTASAFIKSMR 268

Query: 294 DAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
            +  D    ++ +  +    PR   R ++  A + +G   P
Sbjct: 269 GSDPDATVYWLAKMIYAGEDPRFIARRIIIAASEDVGNADP 309


>gi|239832095|ref|ZP_04680424.1| recombination factor protein RarA [Ochrobactrum intermedium LMG
           3301]
 gi|239824362|gb|EEQ95930.1| recombination factor protein RarA [Ochrobactrum intermedium LMG
           3301]
          Length = 438

 Score =  149 bits (375), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 77/337 (22%), Positives = 120/337 (35%), Gaps = 55/337 (16%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
             N  +       LRPR L E TGQ        V        + +L  ++F GPPG GKT
Sbjct: 10  DPNADRNRPLADRLRPRHLSEVTGQEHLTGPEGVLTRMI--ASGSLGSMIFWGPPGTGKT 67

Query: 69  TLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           T+A+++A E  + F   S        + K  + A        + +LF+DEIHR +   ++
Sbjct: 68  TVARLLAGETDLAFEQISAIFSGVADLKKVFEAARARRMSGRQTLLFVDEIHRFNRAQQD 127

Query: 124 ILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
              P MED  + L+    E PS       LSR                        +  +
Sbjct: 128 SFLPVMEDGTVILIGATTENPSFELNAALLSR---------------------ARVLTFH 166

Query: 182 FYEIEDLKTIVQRG--AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
            ++ E + T++ R    +   L + +EA   +   + G  R A  L   V   A     +
Sbjct: 167 PHDGESIATLLTRAEEQEERPLPLDEEARASLIRMADGDGRAALTLGEEVWRAA--RPDE 224

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVG-IETISAGLSEPRDAIED 298
             T E     + R A                    +  G  G    ISA     R +  D
Sbjct: 225 VFTAEKLQDVVQRRAP------------------VYDKGQDGHYNLISALHKSVRGSDPD 266

Query: 299 LIEPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
               Y+ +       P   GR L+ +A + +G+  P 
Sbjct: 267 AALYYLSRMFDAGEDPLYLGRRLVRMAVEDIGLADPQ 303


>gi|13470578|ref|NP_102147.1| recombination factor protein RarA [Mesorhizobium loti MAFF303099]
 gi|14021320|dbj|BAB47933.1| mlr0329 [Mesorhizobium loti MAFF303099]
          Length = 435

 Score =  149 bits (375), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 77/344 (22%), Positives = 121/344 (35%), Gaps = 52/344 (15%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M D   +     +     ++  LRP+ L E  GQ                 + +L  ++F
Sbjct: 1   MADLFSVDEPEKAPPGRPLADRLRPKNLGEVVGQEHLTGPDGALTRLI--GSGSLGSMIF 58

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEI 114
            GPPG GKTT+A+++A E  + F   S        + K  + A L      + +LF+DEI
Sbjct: 59  WGPPGTGKTTVARLLAGETSLAFEQISAVFSGVADLKKVFETAKLRRANGRQTLLFVDEI 118

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++   P MED  + L+    E PS       LSR  ++               
Sbjct: 119 HRFNRAQQDSFLPVMEDGTVVLVGATTENPSFELNAALLSRARVM--------------- 163

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
                              V        +A     A E   R+      A  +L R+ D 
Sbjct: 164 -------------------VFHSLGEESIAKLMVRAEETEGRALPLDDEARAMLIRMSD- 203

Query: 233 AEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVG-IETISAGLSE 291
            +   + T+  E+  AA      D  G      R +   A  +  G  G    ISA    
Sbjct: 204 GDGRASLTLAEEVWRAAKPGEVFDPEGLQ----RIVQRRAPIYDKGQDGHYNLISALHKS 259

Query: 292 PRDAIEDLIEPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
            R +  D    Y+ +       P   GR L+ +A + +G+  P 
Sbjct: 260 VRGSDPDAALYYLARMFDAGEDPLYLGRRLVRMAMEDIGLADPQ 303


>gi|313637743|gb|EFS03102.1| replication-associated recombination protein A [Listeria seeligeri
           FSL S4-171]
          Length = 427

 Score =  149 bits (375), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 71/322 (22%), Positives = 132/322 (40%), Gaps = 37/322 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP++L+E  GQ       K+     KA+   L  ++  GPPG+GKT++A  +A 
Sbjct: 5   PLAYRMRPKSLDEIVGQTHLVGKDKIIYRMVKAKQ--LSSMILYGPPGIGKTSIASAIAG 62

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR+ +     K   ++ A    +    +L +DE+HRL    ++ L P +E   + 
Sbjct: 63  STKYAFRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQDFLLPLLESGAI- 121

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           +++G   S   + IN +    I + T++  L         + +      ++      +RG
Sbjct: 122 ILIGATTSNPYIAINPA----IRSRTQIFELKP-------LTVEDIMTTMDRALADKERG 170

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT--ITREIADAALLRL 253
                + + + A    A  S G  R A   L      +E        IT E+A+  L + 
Sbjct: 171 LGNYHVEIDEFAKKHFATASNGDVRSALNALELAVISSEADKNGITQITLEVAEECLQKK 230

Query: 254 --AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
             A DK G    D+  L+   ++  G            S+   A+  +    +I+ G + 
Sbjct: 231 SLAHDKDGDAHYDV--LSAFQKSVRG------------SDANAALHYMGR--LIEAGDLV 274

Query: 312 RTPRGRLLMPIAWQHLGIDIPH 333
              R R+L+ +A++ +G+  P 
Sbjct: 275 SISR-RMLV-MAYEDIGLANPQ 294


>gi|33866690|ref|NP_898249.1| recombination factor protein RarA/unknown domain fusion protein
           [Synechococcus sp. WH 8102]
 gi|33633468|emb|CAE08673.1| putative ATPase, AAA family [Synechococcus sp. WH 8102]
          Length = 751

 Score =  149 bits (375), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 84/335 (25%), Positives = 132/335 (39%), Gaps = 51/335 (15%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           Q+      +RPRTLEEF GQ    +  ++   A KA  + + +++  GPPG+GKTTLA++
Sbjct: 33  QQAPLADRMRPRTLEEFEGQQGILAQGRLLRRAIKA--DRVGNLILHGPPGVGKTTLARI 90

Query: 74  VARELGVNFRSTSGPVIAKAGDLAAL-------LTNLEDRDVLFIDEIHRLSIIVEEILY 126
           VA     +F S +  V+A   DL A        L     R +LFIDE+HR +   ++ L 
Sbjct: 91  VANHTRAHFSSLNA-VLAGVKDLRAEVDAAKLRLERHGLRSILFIDEVHRFNSAQQDALL 149

Query: 127 PAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           P +E+  + L+    E P     K  +SR  L           + L  R           
Sbjct: 150 PWVENGTVTLIGATTENPYFEVNKALVSRSRLFRLLPLEPDDLHQLLQR----------- 198

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT--IT 242
                   +RG     + VT +AA  +   + G  R     L    + +E        I 
Sbjct: 199 ---ALNDEERGYGTRRVTVTPDAAAHLVDVAGGDARSLLNALELAVESSEPEPDGVIQIN 255

Query: 243 REIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
             IA+ ++ + A   DK G    D                   TISA +   R +  D  
Sbjct: 256 LAIAEESIQQRAVLYDKQGDAHYD-------------------TISAFIKSLRGSDADAA 296

Query: 301 EPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
             ++ +       PR   R ++  A + +G+  P 
Sbjct: 297 LFWLSRMVEAGENPRFIFRRMLIAAGEDIGLADPQ 331


>gi|254824427|ref|ZP_05229428.1| recombination factor protein RarA [Listeria monocytogenes FSL
           J1-194]
 gi|293593663|gb|EFG01424.1| recombination factor protein RarA [Listeria monocytogenes FSL
           J1-194]
          Length = 427

 Score =  149 bits (375), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 71/322 (22%), Positives = 131/322 (40%), Gaps = 37/322 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+ L+E  GQ       K+     KA+   L  ++  GPPG+GKT++A  +A 
Sbjct: 5   PLAYRMRPKALDEIVGQTHLVGKDKIIYRMVKAKQ--LSSMILYGPPGIGKTSIASAIAG 62

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR+ +     K   ++ A    +    +L +DE+HRL    ++ L P +E   + 
Sbjct: 63  STKYAFRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQDFLLPLLESGAI- 121

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           +++G   S   + IN +    I + T++  L     +   I        ++   +  +RG
Sbjct: 122 ILIGATTSNPYIAINPA----IRSRTQIFELKPLTVEDIMI-------TMDRALSDKERG 170

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT--ITREIADAALLRL 253
                + + + A    A  S G  R A   L      +E        IT ++A+  L + 
Sbjct: 171 LGNYDVEIDEVAKKHFATASNGDVRSALNALELAVISSEPNEDGVIHITLDVAEECLQKK 230

Query: 254 --AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
             A DK G    D+  L+   ++  G  V              A+  +    +I+ G + 
Sbjct: 231 SLAHDKDGDAHYDV--LSAFQKSVRGSDV------------NAALHYMGR--LIEAGDLV 274

Query: 312 RTPRGRLLMPIAWQHLGIDIPH 333
              R R+L+ +A++ +G+  P 
Sbjct: 275 SISR-RMLV-MAYEDIGLASPQ 294


>gi|217964339|ref|YP_002350017.1| ATPase, AAA family domain protein [Listeria monocytogenes HCC23]
 gi|217333609|gb|ACK39403.1| ATPase, AAA family domain protein [Listeria monocytogenes HCC23]
 gi|307571095|emb|CAR84274.1| ATPase family protein [Listeria monocytogenes L99]
          Length = 427

 Score =  149 bits (375), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 71/322 (22%), Positives = 131/322 (40%), Gaps = 37/322 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+ L+E  GQ       K+     KA+   L  ++  GPPG+GKT++A  +A 
Sbjct: 5   PLAYRMRPKALDEIVGQTHLVGKDKIIYRMVKAKQ--LSSMILYGPPGIGKTSIASAIAG 62

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR+ +     K   ++ A    +    +L +DE+HRL    ++ L P +E   + 
Sbjct: 63  STKYAFRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQDFLLPLLESGAI- 121

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           +++G   S   + IN +    I + T++  L     +   I        ++   +  +RG
Sbjct: 122 ILIGATTSNPYIAINPA----IRSRTQIFELKPLTVEDIMI-------TMDRALSDKERG 170

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT--ITREIADAALLRL 253
                + + + A    A  S G  R A   L      +E        IT ++A+  L + 
Sbjct: 171 LGNYDVEIDEVAKKHFATASNGDVRSALNALELAVISSEPNEDGVIHITLDVAEECLQKK 230

Query: 254 --AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
             A DK G    D+  L+   ++  G  V              A+  +    +I+ G + 
Sbjct: 231 SLAHDKDGDAHYDV--LSAFQKSVRGSDV------------NAALHYMGR--LIEAGDLV 274

Query: 312 RTPRGRLLMPIAWQHLGIDIPH 333
              R R+L+ +A++ +G+  P 
Sbjct: 275 SISR-RMLV-MAYEDIGLASPQ 294


>gi|325578148|ref|ZP_08148283.1| replication-associated recombination protein A [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325159884|gb|EGC72013.1| replication-associated recombination protein A [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 446

 Score =  149 bits (375), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 66/327 (20%), Positives = 116/327 (35%), Gaps = 41/327 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP  LE++ GQ       K   +A +A    +  ++  GPPG GKTTLA+++A 
Sbjct: 15  PLAARMRPTNLEQYYGQTHLIGEGKPLRKAIQAGH--VHSMILWGPPGTGKTTLAEIIAH 72

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAME 130
            +       S  V +   ++   +   +         +LF+DE+HR +   ++   P +E
Sbjct: 73  RINAEVERISA-VTSGVKEIRESIERAKQNRLADRQTILFVDEVHRFNKSQQDAFLPHIE 131

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           D  +  +    E PS       LSR        RV LL +         ++    + E  
Sbjct: 132 DGTIIFIGATTENPSFELNNALLSR-------ARVYLLKSLTVAEIEQVLQQAISDPE-- 182

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA-EVAHAKTITREIAD 247
                RG     L + +     +A    G  R+A   L  + D A E  + K +   +  
Sbjct: 183 -----RGLGKERLVLEENLLQVLAEYVNGDARLALNCLELMVDMAPETENGKKLDLTLLK 237

Query: 248 AAL--LRLAIDKMGFDQLDLRYLTMIARNFGGGP-----VGIETISAGLSEPRDAIEDLI 300
             L   +   DK G    D   ++ + ++  G            I     +P      + 
Sbjct: 238 EVLGERQARFDKQGDRFYD--LISALHKSIRGSAADAALYWYARIITAGGDPL----YVA 291

Query: 301 EPYM--IQQGFIQRTPRGRLLMPIAWQ 325
              +    +      PR   +   AW 
Sbjct: 292 RRLLAIASEDVGNADPRAMQVALAAWD 318


>gi|319783347|ref|YP_004142823.1| ATPase AAA [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317169235|gb|ADV12773.1| AAA ATPase central domain protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 435

 Score =  149 bits (375), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 78/344 (22%), Positives = 122/344 (35%), Gaps = 52/344 (15%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M D   +           ++  LRPR L E  GQ                 + +L  ++F
Sbjct: 1   MADLFSVDEPEKKPPGRPLADRLRPRNLGEVVGQEHLTGPDGALTRLI--GSGSLGSMIF 58

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEI 114
            GPPG GKTT+A+++A E  + F   S        + K  + A L      + +LF+DEI
Sbjct: 59  WGPPGTGKTTVARLLAGETSLAFEQISAVFSGVADLKKVFESAKLRRANGRQTLLFVDEI 118

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++   P MED  + L+    E PS       LSR                   
Sbjct: 119 HRFNRAQQDSFLPVMEDGTVVLVGATTENPSFELNAALLSR------------------- 159

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
                +  +    E +  ++ R             A E   R+      A  +L R+ D 
Sbjct: 160 --ARVLVFHSLGEESISKLMAR-------------AEETEGRALPLDDEARAMLIRMSD- 203

Query: 233 AEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVG-IETISAGLSE 291
            +   + T+  E+  AA      D  G      R +   A  +  G  G    ISA    
Sbjct: 204 GDGRASLTLAEEVWRAAKPGEVFDPEGLQ----RIVQRRAPIYDKGQDGHYNLISALHKS 259

Query: 292 PRDAIEDLIEPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
            R +  D    Y+ +       P   GR L+ +A + +G+  P 
Sbjct: 260 VRGSDPDAALYYLARMFDAGEDPLYLGRRLVRMAMEDIGLADPQ 303


>gi|306844109|ref|ZP_07476703.1| recombination factor protein RarA [Brucella sp. BO1]
 gi|306275552|gb|EFM57284.1| recombination factor protein RarA [Brucella sp. BO1]
          Length = 437

 Score =  149 bits (375), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 80/348 (22%), Positives = 129/348 (37%), Gaps = 60/348 (17%)

Query: 1   MMDREGLL-SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M D        N  +       LRP+ L E TGQ        V        + +L  ++F
Sbjct: 1   MSDLFSTAADPNADRNRPLADRLRPKHLSEVTGQEHLTGPEGVLTRMI--ASGSLGSMIF 58

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDE 113
            GPPG GKTT+A+++A E  + F   S  + +   DL  +            + +LF+DE
Sbjct: 59  WGPPGTGKTTVARLLAGETDLAFEQISA-IFSGVADLKRVFEAARARRMSGRQTLLFVDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++   P MED  + L+    E PS       LSR                  
Sbjct: 118 IHRFNRAQQDSFLPVMEDGTVILIGATTENPSFELNAALLSR------------------ 159

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTG--LAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
                 +  + +  E + T+++R  +  G  L + DEA   +   + G  R A  L   V
Sbjct: 160 ---ARVLTFHPHGSESIATLLKRAEEQEGQALPLDDEARASLIRMADGDGRAALTLAEEV 216

Query: 230 RDFAEVAHAKTITREIADAALLRLAIDKMG--FDQLDLRYLTMIARNFGGGPVGIETISA 287
              A          E+ DAA L+  + +    +D+    +  +              ISA
Sbjct: 217 WRAA-------RPGEVFDAAKLQDVVQRRAPVYDKSQDGHYNL--------------ISA 255

Query: 288 GLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                R +  D    Y+ +       P   GR L+ +A + +G+  P 
Sbjct: 256 LHKSVRGSDPDAALYYLSRMFDAGEDPLYIGRRLVRMAVEDIGLADPQ 303


>gi|116872943|ref|YP_849724.1| recombination factor protein RarA [Listeria welshimeri serovar 6b
           str. SLCC5334]
 gi|116741821|emb|CAK20945.1| ATPase, AAA domain family protein [Listeria welshimeri serovar 6b
           str. SLCC5334]
          Length = 427

 Score =  149 bits (375), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 72/322 (22%), Positives = 130/322 (40%), Gaps = 37/322 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+ L+E  GQ       K+     KA+   L  ++  GPPG+GKT++A  +A 
Sbjct: 5   PLAYRMRPKALDEIVGQTHLVGKDKIIYRMVKAKQ--LSSMILYGPPGIGKTSIASAIAG 62

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR+ +     K   ++ A    +    +L +DE+HRL    ++ L P +E   + 
Sbjct: 63  STKYAFRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQDFLLPLLESGAI- 121

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           +++G   S   + IN +    I + T++  L     +   I +     + E       RG
Sbjct: 122 ILIGATTSNPYIAINPA----IRSRTQIFELKPLTVEDIMITMDRALLDKE-------RG 170

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT--ITREIADAALLRL 253
                + + + A    A  S G  R A   L      +E        IT ++A+  L + 
Sbjct: 171 LGNYQVEIDEFAKKHFATASNGDVRSALNALELAVISSEANEEGIIHITLDVAEECLQKK 230

Query: 254 --AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
             A DK G    D+  L+   ++  G  V              A+  +    +I+ G + 
Sbjct: 231 SLAHDKDGDAHYDV--LSAFQKSVRGSDV------------NAALHYMGR--LIEAGDLV 274

Query: 312 RTPRGRLLMPIAWQHLGIDIPH 333
              R R+L+ +A++ +G+  P 
Sbjct: 275 SISR-RMLV-MAYEDVGLANPQ 294


>gi|255008670|ref|ZP_05280796.1| recombination factor protein RarA [Bacteroides fragilis 3_1_12]
 gi|313146404|ref|ZP_07808597.1| recombination factor protein RarA [Bacteroides fragilis 3_1_12]
 gi|313135171|gb|EFR52531.1| recombination factor protein RarA [Bacteroides fragilis 3_1_12]
          Length = 423

 Score =  149 bits (375), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 75/330 (22%), Positives = 124/330 (37%), Gaps = 53/330 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP+TL+++ GQ        +  +   A    +   +  GPPG+GKTTLAQ++A 
Sbjct: 3   PLAERLRPKTLDDYIGQKHLVGPGAILRKMIDA--GRISSFILWGPPGVGKTTLAQIIAN 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAM 129
           +L   F + S  V +   D+  ++   +          +LFIDEIHR S   ++ L  A+
Sbjct: 61  KLETPFYTLSA-VTSGVKDVREVIDRAKSNKFFTQSSPILFIDEIHRFSKSQQDSLLGAV 119

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E   + L+    E PS   ++  LSR  L    +        L  R      +       
Sbjct: 120 EHGTVTLIGATTENPSFEVIRPLLSRCQLYTLRSLEKEDLLELLQRAITTDTV------- 172

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
                    K   + + + +A  I   S G  R    +L  V + +E      IT ++  
Sbjct: 173 --------LKERKIELKETSA--ILRFSGGDARKLLNILELVVE-SETEETVVITDDLVT 221

Query: 248 AALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
             L +   A DK G    D+                   ISA +   R +  D    ++ 
Sbjct: 222 ERLQQNPLAYDKDGEMHYDI-------------------ISAFIKSIRGSDPDGAIYWLA 262

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +       P    R L+  A + +G+  P+
Sbjct: 263 RMVEGGEDPAFIARRLVISASEDIGLANPN 292


>gi|254459950|ref|ZP_05073366.1| AAA ATPase, central region [Rhodobacterales bacterium HTCC2083]
 gi|206676539|gb|EDZ41026.1| AAA ATPase, central region [Rhodobacteraceae bacterium HTCC2083]
          Length = 436

 Score =  149 bits (375), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 73/346 (21%), Positives = 123/346 (35%), Gaps = 56/346 (16%)

Query: 1   MMDREGLLSRNVSQE--DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M+D     +    Q+        LRP++L E  GQ +               + +L  ++
Sbjct: 1   MVDLFDTGAAREPQKGLRPLADRLRPQSLAEVIGQKQVLGEGAPL--EVMLSSGSLSSIV 58

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDE 113
           F GPPG+GKTT+A+++A E  ++F   S      P + K  + A +        +LF+DE
Sbjct: 59  FWGPPGVGKTTIARLLAHETELHFVQISAIFTGMPDLRKVFEGAKIRRQNGQGTLLFVDE 118

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++   P MED  + L+    E PS       LSR  ++              
Sbjct: 119 IHRFNKAQQDGFLPYMEDGTILLVGATTENPSFELNSAVLSRAQVLVL------------ 166

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTG--LAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
                       ++ DL+ + QR  +     L +   A   +   + G  R    L+ +V
Sbjct: 167 ---------ERLDLADLERMAQRAEQELDKELPLDGPAREALLEMADGDGRALLNLIEQV 217

Query: 230 RDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGL 289
                                      K+   +L  R     A+    G      ISA  
Sbjct: 218 A--------------------AWKTDHKLTPPELSKRLQKRAAQYDNSGDAHYNLISALH 257

Query: 290 SEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
              R +  D    +  +       PR   R L+ +A + +G+  P 
Sbjct: 258 KSVRGSDPDAALYWFARMLEGGEDPRFLARRLVRMAVEDIGLADPQ 303


>gi|332879429|ref|ZP_08447125.1| ATPase, AAA family [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332682619|gb|EGJ55520.1| ATPase, AAA family [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 423

 Score =  149 bits (375), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 76/329 (23%), Positives = 124/329 (37%), Gaps = 51/329 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP+TL+++ GQ     +  V  +     +  +   +  GPPG+GKTTLAQ++A 
Sbjct: 4   PLAERLRPQTLDDYIGQKHLVGSDAVLRKMI--DSGRISSFILWGPPGVGKTTLAQIIAH 61

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAM 129
            L   F + S  V +   D+  ++    +         +LFIDEIHR S   ++ L  A+
Sbjct: 62  RLETPFYTLSA-VTSGVKDVREVIEKARNNRFFTQASPILFIDEIHRFSKSQQDSLLGAV 120

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E   + L+    E PS   ++  LSR  L    +                       +E 
Sbjct: 121 EQGTVTLIGATTENPSFEVIRPLLSRCQLYVLKSLTKDDL-----------------LEL 163

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           L   V+R   L    +       +   S G  R    +L  V     V    T    I D
Sbjct: 164 LHKAVERDIILKTKHIEFRETDAMLRYSGGDARKLLNILELV-----VEADGTDQVVITD 218

Query: 248 AALL-RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           A +  RL  + + +D               GG +  + ISA +   R +  D    ++ +
Sbjct: 219 AVVAGRLQQNPLAYD--------------KGGELHYDIISAFIKSIRGSDPDAALYWLAR 264

Query: 307 QGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                  P    R L+  A + +G+  P+
Sbjct: 265 MIEGGEDPSFIARRLVISASEDIGLANPN 293


>gi|46907742|ref|YP_014131.1| recombination factor protein RarA [Listeria monocytogenes serotype
           4b str. F2365]
 gi|47094362|ref|ZP_00232057.1| ATPase, AAA family domain protein [Listeria monocytogenes str. 4b
           H7858]
 gi|46881011|gb|AAT04308.1| ATPase, AAA family domain protein [Listeria monocytogenes serotype
           4b str. F2365]
 gi|47017260|gb|EAL08098.1| ATPase, AAA family domain protein [Listeria monocytogenes str. 4b
           H7858]
 gi|328465552|gb|EGF36781.1| recombination factor protein RarA [Listeria monocytogenes 1816]
          Length = 427

 Score =  148 bits (374), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 71/322 (22%), Positives = 131/322 (40%), Gaps = 37/322 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+ L+E  GQ       K+     KA+   L  ++  GPPG+GKT++A  +A 
Sbjct: 5   PLAYRMRPKALDEIVGQTHLVGKDKIIYRMVKAKQ--LSSMILYGPPGIGKTSIASAIAG 62

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR+ +     K   ++ A    +    +L +DE+HRL    ++ L P +E   + 
Sbjct: 63  STKYAFRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQDFLLPLLESGAI- 121

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           +++G   S   + IN +    I + T++  L     +   I        ++   +  +RG
Sbjct: 122 ILIGATTSNPYIAINPA----IRSRTQIFELKPLTVEDIMI-------TMDRALSDKERG 170

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT--ITREIADAALLRL 253
                + + + A    A  S G  R A   L      +E        IT ++A+  L + 
Sbjct: 171 LGNYDVEIDEVAKKHFATASNGDVRSALNALELAVISSEPNEDGVIHITLDVAEECLQKK 230

Query: 254 --AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
             A DK G    D+  L+   ++  G  V              A+  +    +I+ G + 
Sbjct: 231 SLAHDKDGDAHYDV--LSAFQKSVRGSDV------------NAALHYMGR--LIEAGDLV 274

Query: 312 RTPRGRLLMPIAWQHLGIDIPH 333
              R R+L+ +A++ +G+  P 
Sbjct: 275 SISR-RMLV-MAYEDIGLASPQ 294


>gi|224023693|ref|ZP_03642059.1| hypothetical protein BACCOPRO_00409 [Bacteroides coprophilus DSM
           18228]
 gi|224016915|gb|EEF74927.1| hypothetical protein BACCOPRO_00409 [Bacteroides coprophilus DSM
           18228]
          Length = 424

 Score =  148 bits (374), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 76/330 (23%), Positives = 123/330 (37%), Gaps = 53/330 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+TL+++ GQ        V  +   A    +   +  GPPG+GKTTLAQ++A 
Sbjct: 4   PLAERMRPKTLDDYIGQKHLVGEGAVLRKMIDA--GRISSFILWGPPGVGKTTLAQIIAN 61

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAM 129
            L   F + S  V +   D+  ++          +   +LFIDEIHR S   ++ L  A+
Sbjct: 62  RLETPFYTLSA-VTSGVKDVRDVIDKARSNRFFSQQSPILFIDEIHRFSKSQQDSLLGAV 120

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E   + L+    E PS   ++  LSR  L    +                       +E 
Sbjct: 121 ETGVVTLIGATTENPSFEVIRPLLSRCQLYVLKSLEKEDL-----------------LEL 163

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           L+  ++R A +    V       +   S G  R    +L  V + A+      IT E   
Sbjct: 164 LRHTLERDALMKEKQVELRETDAMLRYSGGDARKLLNILELVVE-ADTEVPVVITDEKVV 222

Query: 248 AALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
             L +   A DK G    D+                   ISA +   R +  D    ++ 
Sbjct: 223 ERLQQNPLAYDKDGEMHYDI-------------------ISAFIKSIRGSDPDGALYWLA 263

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +       P    R L+  A + +G+  P+
Sbjct: 264 RMVEGGEDPAFIARRLVISASEDIGLANPN 293


>gi|171911243|ref|ZP_02926713.1| ATPase, AAA family protein [Verrucomicrobium spinosum DSM 4136]
          Length = 466

 Score =  148 bits (374), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 69/326 (21%), Positives = 117/326 (35%), Gaps = 43/326 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RPR+++E+ GQ       K+   A  A  +    ++F GPPG+GKTTLA +++ 
Sbjct: 38  PLAARMRPRSMDEYVGQEHILGEGKLLRRAIMA--DRFSSLIFYGPPGVGKTTLATIISN 95

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAM 129
           E    F + SG V +   ++  +    E          VLF+DEIHR +   +++L P +
Sbjct: 96  ETHSRFVTLSG-VESNVAEIRMVADAAEKEERLNGIGTVLFVDEIHRFNKSQQDVLLPHL 154

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E   L  +      P        +SR  +             L D               
Sbjct: 155 ERGSLRFIGATTHNPFFYINSPLVSRSQVFTLEPLTVEHLERLID--------------Q 200

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
                +RG     + +T EA   +A+   G  R     L              +   +A 
Sbjct: 201 AIADEERGLGKLHVEITPEAKRHLAVVCDGDGRKCLNALELAALTTPAGADGKVHIHLAV 260

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           A        +    Q  + Y        G G    +TISA +   R +  D    ++ + 
Sbjct: 261 A--------EESVQQKTVVY-------DGDGDAHYDTISAFIKSIRGSDPDAAIYWLAKM 305

Query: 308 GFIQRTPR--GRLLMPIAWQHLGIDI 331
            +     R   R L+  A + +G+  
Sbjct: 306 LYAGEDIRFLCRRLVISASEDIGMAD 331


>gi|227546758|ref|ZP_03976807.1| recombination ATPase [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|227212720|gb|EEI80601.1| recombination ATPase [Bifidobacterium longum subsp. infantis ATCC
           55813]
          Length = 459

 Score =  148 bits (374), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 90/364 (24%), Positives = 132/364 (36%), Gaps = 73/364 (20%)

Query: 2   MDREGLLSRNVSQED---ADISLLRPRTLEEFTGQVEACSNLKVFIE----AAKARAEAL 54
           M    L     + E         +RPRTL+E  GQ +              A+K    A 
Sbjct: 1   MSENDLFGAADAPESMTRPLAVRMRPRTLDEVIGQTQVLGQGSPLRRLANPASKGSLTAP 60

Query: 55  DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------D 107
             V+  GPPG+GKTTLA +VA + G  F   S  V +   D+  +LT   +R        
Sbjct: 61  SSVILFGPPGVGKTTLATIVAGQSGRVFEELSA-VTSGVKDVRDVLTRAHERLVSRGRET 119

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGL 165
           VLFIDE+HR S   ++ L PA+E+  +  +    E PS   +K  LSR  ++   +    
Sbjct: 120 VLFIDEVHRFSKSQQDALLPAVENRDVTFIGATTENPSFSIIKPLLSRSVVVKLES---- 175

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG-----LAVTDEAACEIAMRSRGTPR 220
                             E + L  +VQR           +  TDEA  +I   + G  R
Sbjct: 176 -----------------LEPDQLTELVQRALTDDRGLRGEVKATDEAIADIVRMAGGDAR 218

Query: 221 IAGRLLRRVR-----DFAEVAHAKTITREIADAALLRL----AIDKMGFDQLDLRYLTMI 271
            +  +L         D A    A+         A +        DK G D  D+      
Sbjct: 219 KSLTILEAAAGAVTGDEARKKGARRPIITPEIVATVMDTATVRYDKDGDDHYDV------ 272

Query: 272 ARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGI 329
                        ISA +   R +  D    Y+ +       PR   R +M  A + +G+
Sbjct: 273 -------------ISAFIKSMRGSDPDAAIHYLARMLKAGEDPRFIARRIMIAASEEVGM 319

Query: 330 DIPH 333
             P 
Sbjct: 320 AAPQ 323


>gi|212709768|ref|ZP_03317896.1| hypothetical protein PROVALCAL_00816 [Providencia alcalifaciens DSM
           30120]
 gi|212687579|gb|EEB47107.1| hypothetical protein PROVALCAL_00816 [Providencia alcalifaciens DSM
           30120]
          Length = 447

 Score =  148 bits (374), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 72/339 (21%), Positives = 117/339 (34%), Gaps = 46/339 (13%)

Query: 8   LSRNVSQED--ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           LS + SQ +     + +RP TLE++ GQ    +  K    A +A    L  ++  GPPG 
Sbjct: 4   LSLDFSQNEFQPLAARMRPETLEQYIGQKHLLAEGKPLPRAIRAGH--LHSMILWGPPGT 61

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSI 119
           GKTTLA+V+      +    S  V +   ++   +           R +LF+DE+HR + 
Sbjct: 62  GKTTLAEVIGHYAQADIERISA-VTSGIKEIRESIEKARQNLSAGRRTILFVDEVHRFNK 120

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATT-RVGLLTNPLQDRFGI 176
             ++   P +ED  +  +    E PS       LSR  +    +     +   L    G 
Sbjct: 121 SQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLESSEIEEVLLQALGD 180

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
            +               RG     + + D     IA    G  R +  LL  + D AE  
Sbjct: 181 SV---------------RGLGGQNIILPDSTRKMIADLVNGDARRSLNLLEMMADMAEAD 225

Query: 237 HAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAI 296
           +             +         ++ D  Y               + ISA     R + 
Sbjct: 226 NQGQRILTAELLKEVSGERAARFDNKGDRYY---------------DLISALHKSVRGSA 270

Query: 297 EDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            D    +  +       P    R L+ IA + +G   P 
Sbjct: 271 PDAALYWYARIITAGGDPLYVARRLLAIASEDIGNADPR 309


>gi|254931449|ref|ZP_05264808.1| recombination factor protein RarA [Listeria monocytogenes HPB2262]
 gi|300764820|ref|ZP_07074810.1| ATPase [Listeria monocytogenes FSL N1-017]
 gi|293583000|gb|EFF95032.1| recombination factor protein RarA [Listeria monocytogenes HPB2262]
 gi|300514496|gb|EFK41553.1| ATPase [Listeria monocytogenes FSL N1-017]
 gi|332311956|gb|EGJ25051.1| hypothetical AAA domain-containing protein YrvN [Listeria
           monocytogenes str. Scott A]
          Length = 427

 Score =  148 bits (374), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 71/322 (22%), Positives = 131/322 (40%), Gaps = 37/322 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+ L+E  GQ       K+     KA+   L  ++  GPPG+GKT++A  +A 
Sbjct: 5   PLAYRMRPKALDEIVGQTHLVGKDKIIYRMVKAKQ--LSSMILYGPPGIGKTSIASAIAG 62

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR+ +     K   ++ A    +    +L +DE+HRL    ++ L P +E   + 
Sbjct: 63  STKYAFRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQDFLLPLLESGAI- 121

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           +++G   S   + IN +    I + T++  L     +   I        ++   +  +RG
Sbjct: 122 ILIGATTSNPYIAINPA----IRSRTQIFELKPLTVEDIMI-------TMDRALSDKERG 170

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT--ITREIADAALLRL 253
                + + + A    A  S G  R A   L      +E        IT ++A+  L + 
Sbjct: 171 LGNYDVEIDEVAKKHFATASNGDVRSALNALELAVISSEPNEDGVIHITLDVAEECLQKK 230

Query: 254 --AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
             A DK G    D+  L+   ++  G  V              A+  +    +I+ G + 
Sbjct: 231 SLAHDKDGDAHYDV--LSAFQKSVRGSDV------------NAALHYMGR--LIEAGDLV 274

Query: 312 RTPRGRLLMPIAWQHLGIDIPH 333
              R R+L+ +A++ +G+  P 
Sbjct: 275 SISR-RMLV-MAYEDIGLASPQ 294


>gi|15806898|ref|NP_295621.1| recombination factor protein RarA [Deinococcus radiodurans R1]
 gi|6459682|gb|AAF11452.1|AE002029_1 conserved hypothetical protein [Deinococcus radiodurans R1]
          Length = 434

 Score =  148 bits (374), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 81/333 (24%), Positives = 122/333 (36%), Gaps = 64/333 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRPRT+ E  GQ       K        ++  L  ++  GPPG+GKTTLA+++A 
Sbjct: 9   PLAERLRPRTVAEVAGQSHLLGAGKPLTR--VLQSGRLGSLILWGPPGVGKTTLARLLAG 66

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130
           E+G +F + S  V A   D+   +   E       R VLF+DEIHR +   ++ L P +E
Sbjct: 67  EVGAHFIALSA-VSAGVKDVRDAVAEAEREQARGRRTVLFLDEIHRFNKAQQDALLPHVE 125

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
              L L+    E PS        SR   +                            ED+
Sbjct: 126 SGLLTLIGATTENPSFEVNPALRSRARTLVLEA---------------------LSPEDV 164

Query: 189 KTIVQRGA----KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
             +++R       L G+   D A   +A  + G  R A   L      A       +T E
Sbjct: 165 LALLRRALSDERGLPGVEAEDSALELLARLAEGDARRALSTLEVAATLA-----NPVTEE 219

Query: 245 IADAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
               A  R   A+DK G D  +L                   ISA     R +  D    
Sbjct: 220 AVTEAFGRHLPAMDKNGEDFYNL-------------------ISALHKSVRASHPDAALY 260

Query: 303 YMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           ++ +       P    R ++ +A + +G+  P 
Sbjct: 261 WLARMLQGGADPHYVARRIVRMASEDIGLADPQ 293


>gi|328474875|gb|EGF45675.1| recombination factor protein RarA [Listeria monocytogenes 220]
          Length = 428

 Score =  148 bits (374), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 71/322 (22%), Positives = 131/322 (40%), Gaps = 37/322 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+ L+E  GQ       K+     KA+   L  ++  GPPG+GKT++A  +A 
Sbjct: 5   PLAYRMRPKALDEIVGQTHLVGKDKIIYRMVKAKQ--LSSMILYGPPGIGKTSIASAIAG 62

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR+ +     K   ++ A    +    +L +DE+HRL    ++ L P +E   + 
Sbjct: 63  STKYAFRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQDFLLPLLESGAI- 121

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           +++G   S   + IN +    I + T++  L     +   I        ++   +  +RG
Sbjct: 122 ILIGATTSNPYIAINPA----IRSRTQIFELKPLTVEDIMI-------TMDRALSDKERG 170

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT--ITREIADAALLRL 253
                + + + A    A  S G  R A   L      +E        IT ++A+  L + 
Sbjct: 171 LGNYDVEIDEVAKKHFATASNGDVRSALNALELAVISSEPNEDGVIHITLDVAEECLQKK 230

Query: 254 --AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
             A DK G    D+  L+   ++  G  V              A+  +    +I+ G + 
Sbjct: 231 SLAHDKDGDAHYDV--LSAFQKSVRGSDV------------NAALHYMGR--LIEAGDLV 274

Query: 312 RTPRGRLLMPIAWQHLGIDIPH 333
              R R+L+ +A++ +G+  P 
Sbjct: 275 SISR-RMLV-MAYEDIGLASPQ 294


>gi|313633161|gb|EFS00045.1| replication-associated recombination protein A [Listeria seeligeri
           FSL N1-067]
          Length = 427

 Score =  148 bits (374), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 71/322 (22%), Positives = 132/322 (40%), Gaps = 37/322 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP++L+E  GQ       K+     KA+   L  ++  GPPG+GKT++A  +A 
Sbjct: 5   PLAYRMRPKSLDEIVGQTHLVGKDKIIYRMVKAKQ--LSSMILYGPPGIGKTSIASAIAG 62

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR+ +     K   ++ A    +    +L +DE+HRL    ++ L P +E   + 
Sbjct: 63  STKYAFRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQDFLLPLLESGAI- 121

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           +++G   S   + IN +    I + T++  L         + +      ++      +RG
Sbjct: 122 ILIGATTSNPYIAINPA----IRSRTQIFELKP-------LTVEDIMTTMDRALADKERG 170

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT--ITREIADAALLRL 253
                + + + A    A  S G  R A   L      +E        IT E+A+  L + 
Sbjct: 171 LGNYQVEIDEFAKKHFATASNGDVRSALNALELAVISSEADKNGITQITLEVAEECLQKK 230

Query: 254 --AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
             A DK G    D+  L+   ++  G            S+   A+  +    +I+ G + 
Sbjct: 231 SLAHDKDGDAHYDV--LSAFQKSVRG------------SDANAALHYMGR--LIEAGDLV 274

Query: 312 RTPRGRLLMPIAWQHLGIDIPH 333
              R R+L+ +A++ +G+  P 
Sbjct: 275 SISR-RMLV-MAYEDIGLANPQ 294


>gi|225627677|ref|ZP_03785714.1| recombination factor protein RarA [Brucella ceti str. Cudo]
 gi|225617682|gb|EEH14727.1| recombination factor protein RarA [Brucella ceti str. Cudo]
 gi|326409226|gb|ADZ66291.1| recombination factor protein RarA [Brucella melitensis M28]
          Length = 457

 Score =  148 bits (374), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 79/348 (22%), Positives = 124/348 (35%), Gaps = 60/348 (17%)

Query: 1   MMDREGLL-SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M D        N  +       LRP+ L E TGQ        V        + +L  ++F
Sbjct: 21  MSDLFSTAADPNADRNRPLADRLRPKHLSEVTGQEHLTGPEGVLTRMI--ASGSLGSMVF 78

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDE 113
            GPPG GKTT+A+++A E  + F   S  + +   DL  +            + +LF+DE
Sbjct: 79  WGPPGTGKTTVARLLAGETDLAFEQISA-IFSGVADLKRVFEAARARRMSGRQTLLFVDE 137

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++   P MED  + L+    E PS       LSR                  
Sbjct: 138 IHRFNRAQQDSFLPVMEDGTVILIGATTENPSFELNAALLSR------------------ 179

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTG--LAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
                 +  + ++ E + T+++R  +  G  L + DEA   +   + G  R A  L   V
Sbjct: 180 ---ARVLTFHPHDSESIATLLKRAEEQEGQALPLDDEARASLIRMADGDGRAALTLAEEV 236

Query: 230 RDFAEVAHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISA 287
                V   +          + R A   DK      +L                   ISA
Sbjct: 237 WR--AVRPGEVFDAAKLQDVVQRRAPVYDKSQDGHYNL-------------------ISA 275

Query: 288 GLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                R +  D    Y+ +       P   GR L+ +A + +G+  P 
Sbjct: 276 LHKSVRGSDPDAALYYLSRMFDAGEDPLYIGRRLVRMAVEDIGLADPQ 323


>gi|325282636|ref|YP_004255177.1| AAA ATPase central domain-containing protein [Deinococcus
           proteolyticus MRP]
 gi|324314445|gb|ADY25560.1| AAA ATPase central domain protein [Deinococcus proteolyticus MRP]
          Length = 429

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 78/327 (23%), Positives = 114/327 (34%), Gaps = 52/327 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRPRT+ E  GQ       K         +  L  ++  GPPG+GKTTLA++VA 
Sbjct: 9   PLAERLRPRTVAEVVGQTHLLGPGKPLTR--LLNSGRLPSLILWGPPGVGKTTLARLVAG 66

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAME 130
           E+G +F   S  V A   D+   +   E       + VLF+DEIHR +   ++ L P +E
Sbjct: 67  EVGSHFIGLSA-VSAGVKDVREAVLEAEARRGRGQKTVLFLDEIHRFNKAQQDALLPHVE 125

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
              L L+    E PS        SR   +            L +R     R         
Sbjct: 126 SGLLTLIGATTENPSFEVNPALRSRARTLVLEALSKDDIRALLERALTDPR--------- 176

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
                    L G+ +  EA   +A  + G  R A   L      A       +T E    
Sbjct: 177 --------GLEGVRMEPEALELLARLADGDGRRALGTLEAAAVLA-----NPVTEEAVTE 223

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           A  +          +D            GG      ISA     R +  D    ++ +  
Sbjct: 224 AFGKH------LPAMD-----------KGGEDFYNLISALHKSVRGSHVDASLYWLARML 266

Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIPH 333
                P    R ++ IA + +G+  P 
Sbjct: 267 EGGADPLYVARRIVRIAAEDVGLADPQ 293


>gi|290893873|ref|ZP_06556851.1| recombination factor protein RarA [Listeria monocytogenes FSL
           J2-071]
 gi|290556590|gb|EFD90126.1| recombination factor protein RarA [Listeria monocytogenes FSL
           J2-071]
          Length = 427

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 71/322 (22%), Positives = 131/322 (40%), Gaps = 37/322 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+ L+E  GQ       K+     KA+   L  ++  GPPG+GKT++A  +A 
Sbjct: 5   PLAYRMRPKALDEIVGQTHLVGKDKIIYRMVKAKQ--LSSMILYGPPGIGKTSIASAIAG 62

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR+ +     K   ++ A    +    +L +DE+HRL    ++ L P +E   + 
Sbjct: 63  STKYAFRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQDFLLPLLESGAI- 121

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           +++G   S   + IN +    I + T++  L     +   I        ++   +  +RG
Sbjct: 122 ILIGATTSNPYIAINPA----IRSRTQIFELKPLTVEDIMI-------TMDRALSDKERG 170

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT--ITREIADAALLRL 253
                + + + A    A  S G  R A   L      +E        IT ++A+  L + 
Sbjct: 171 LGNYDVEIDEVAKKHFATASNGDVRSALNALELAVISSEPNEDGVIHITLDVAEECLQKK 230

Query: 254 --AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
             A DK G    D+  L+   ++  G  V              A+  +    +I+ G + 
Sbjct: 231 SLAHDKDGDAHYDV--LSAFQKSVRGSDV------------NAALHYMGR--LIEAGDLV 274

Query: 312 RTPRGRLLMPIAWQHLGIDIPH 333
              R R+L+ +A++ +G+  P 
Sbjct: 275 SISR-RMLV-MAYEDIGLASPQ 294


>gi|47097211|ref|ZP_00234775.1| ATPase, AAA family domain protein [Listeria monocytogenes str. 1/2a
           F6854]
 gi|224499826|ref|ZP_03668175.1| recombination factor protein RarA [Listeria monocytogenes Finland
           1988]
 gi|254898320|ref|ZP_05258244.1| recombination factor protein RarA [Listeria monocytogenes J0161]
 gi|254912188|ref|ZP_05262200.1| ATPase [Listeria monocytogenes J2818]
 gi|254936516|ref|ZP_05268213.1| ATPase [Listeria monocytogenes F6900]
 gi|284801904|ref|YP_003413769.1| recombination factor protein RarA [Listeria monocytogenes 08-5578]
 gi|284995046|ref|YP_003416814.1| recombination factor protein RarA [Listeria monocytogenes 08-5923]
 gi|47014425|gb|EAL05394.1| ATPase, AAA family domain protein [Listeria monocytogenes str. 1/2a
           F6854]
 gi|258609110|gb|EEW21718.1| ATPase [Listeria monocytogenes F6900]
 gi|284057466|gb|ADB68407.1| recombination factor protein RarA [Listeria monocytogenes 08-5578]
 gi|284060513|gb|ADB71452.1| recombination factor protein RarA [Listeria monocytogenes 08-5923]
 gi|293590161|gb|EFF98495.1| ATPase [Listeria monocytogenes J2818]
          Length = 427

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 71/322 (22%), Positives = 131/322 (40%), Gaps = 37/322 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+ L+E  GQ       K+     KA+   L  ++  GPPG+GKT++A  +A 
Sbjct: 5   PLAYRMRPKALDEIVGQTHLVGKDKIIYRMVKAKQ--LSSMILYGPPGIGKTSIASAIAG 62

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR+ +     K   ++ A    +    +L +DE+HRL    ++ L P +E   + 
Sbjct: 63  STKYAFRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQDFLLPLLESGAI- 121

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           +++G   S   + IN +    I + T++  L     +   I        ++   +  +RG
Sbjct: 122 ILIGATTSNPYIAINPA----IRSRTQIFELKPLTVEDIMI-------TMDRALSDKERG 170

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT--ITREIADAALLRL 253
                + + + A    A  S G  R A   L      +E        IT ++A+  L + 
Sbjct: 171 LGNYDVEIDEVAKKHFATASNGDVRSALNALELAVISSEPNEDGVIHITLDVAEECLQKK 230

Query: 254 --AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
             A DK G    D+  L+   ++  G  V              A+  +    +I+ G + 
Sbjct: 231 SLAHDKDGDAHYDV--LSAFQKSVRGSDV------------NAALHYMGR--LIEAGDLV 274

Query: 312 RTPRGRLLMPIAWQHLGIDIPH 333
              R R+L+ +A++ +G+  P 
Sbjct: 275 SISR-RMLV-MAYEDIGLASPQ 294


>gi|157146420|ref|YP_001453739.1| recombination factor protein RarA [Citrobacter koseri ATCC BAA-895]
 gi|157083625|gb|ABV13303.1| hypothetical protein CKO_02179 [Citrobacter koseri ATCC BAA-895]
          Length = 428

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 78/321 (24%), Positives = 115/321 (35%), Gaps = 40/321 (12%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  L ++ GQ    +  K    A +A    L  ++  GPPG GKTTLA+V+AR    +
Sbjct: 1   MRPENLAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIARYANAD 58

Query: 82  FRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
               S        I +A + A    N   R +LF+DE+HR +   ++   P +ED  +  
Sbjct: 59  VERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 118

Query: 137 M--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           +    E PS       LSR        RV LL +   +     +     +         R
Sbjct: 119 IGATTENPSFELNSALLSR-------ARVYLLKSLTTEDIEQVLNQAMDDK-------AR 164

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
           G     + + DE    IA    G  R A   L  + D AEV  +          ALL   
Sbjct: 165 GYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVL---LPALLTEI 221

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
             +              AR    G    + ISA     R +  D    +  +       P
Sbjct: 222 AGERS------------ARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDP 269

Query: 315 R--GRLLMPIAWQHLGIDIPH 333
               R  + IA + +G   P 
Sbjct: 270 LYVARRCLAIASEDVGNADPR 290


>gi|270294113|ref|ZP_06200315.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275580|gb|EFA21440.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 423

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 79/330 (23%), Positives = 124/330 (37%), Gaps = 53/330 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRPRTL+E+ GQ        V  +   A    +   +  GPPG+GKTTLAQ++A 
Sbjct: 3   PLAERLRPRTLDEYIGQKHLVGPGAVLRKMIDA--GRISSFILWGPPGVGKTTLAQIIAN 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAM 129
           +L   F + S  V +   D+  ++   +          +LFIDEIHR S   ++ L  A+
Sbjct: 61  KLETPFYTLSA-VTSGVKDVRDVIERAKSNRFFSQASPILFIDEIHRFSKSQQDSLLGAV 119

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E   + L+    E PS   ++  LSR  L    +        L  R      +       
Sbjct: 120 EQGTVTLIGATTENPSFEVIRPLLSRCQLYTLKSLEKDDLLELLQRAITTDTV------- 172

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
                    K   + + +  A  +   S G  R    +L  V D +E A    IT ++  
Sbjct: 173 --------LKERKIELKETTA--MLRFSGGDARKLLNILELVVD-SEAADPVLITDDMVT 221

Query: 248 AALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
             L +   A DK G    D+                   ISA +   R +  D    ++ 
Sbjct: 222 ERLQQNPLAYDKDGEMHYDI-------------------ISAFIKSIRGSDPDGAIYWLA 262

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +       P    R L+  A + +G+  P+
Sbjct: 263 RMVEGGEDPAFIARRLVISASEDIGLANPN 292


>gi|226224115|ref|YP_002758222.1| hypothetical protein Lm4b_01524 [Listeria monocytogenes Clip81459]
 gi|225876577|emb|CAS05286.1| Hypothetical protein of unknown function [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
          Length = 427

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 71/322 (22%), Positives = 131/322 (40%), Gaps = 37/322 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+ L+E  GQ       K+     KA+   L  ++  GPPG+GKT++A  +A 
Sbjct: 5   PLAYRMRPKALDEIVGQTHLVGKDKIIYRMVKAKQ--LSSMILYGPPGIGKTSIASAIAG 62

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR+ +     K   ++ A    +    +L +DE+HRL    ++ L P +E   + 
Sbjct: 63  STKYAFRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQDFLLPLLESGAI- 121

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           +++G   S   + IN +    I + T++  L     +   I        ++   +  +RG
Sbjct: 122 ILIGATTSNPYIAINPA----IRSRTQIFELKPLTVEDIMI-------TMDRALSDKERG 170

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT--ITREIADAALLRL 253
                + + + A    A  S G  R A   L      +E        IT ++A+  L + 
Sbjct: 171 LGNYDVEIDEVAKKHFATASNGDVRSALNALELAVISSEPNEDGVIHITLDVAEECLQKK 230

Query: 254 --AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
             A DK G    D+  L+   ++  G  V              A+  +    +I+ G + 
Sbjct: 231 SLAHDKDGDAHYDV--LSAFQKSVRGSDV------------NAALHYMGR--LIEAGDLV 274

Query: 312 RTPRGRLLMPIAWQHLGIDIPH 333
              R R+L+ +A++ +G+  P 
Sbjct: 275 SISR-RMLV-MAYEDIGLASPQ 294


>gi|326201922|ref|ZP_08191792.1| AAA ATPase central domain protein [Clostridium papyrosolvens DSM
           2782]
 gi|325987717|gb|EGD48543.1| AAA ATPase central domain protein [Clostridium papyrosolvens DSM
           2782]
          Length = 427

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 72/327 (22%), Positives = 122/327 (37%), Gaps = 43/327 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                + PRT++EF GQ       K+     KA  + +  ++  GPPG GKT+LA+++A 
Sbjct: 7   PLAYRMSPRTIDEFAGQKHIIGKDKMLYRMIKA--DRITSIILYGPPGTGKTSLARIIAN 64

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAM 129
               +F   +  V +   D+  +  + ++       R VLF+DEIHR +   ++ L P +
Sbjct: 65  TTQSSFEKLNA-VTSGVADIKRIAADTQNTLLNPNGRTVLFVDEIHRFNKAQQDALLPFV 123

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ED  + L+    E P     K  +SR T+       G     L              +++
Sbjct: 124 EDGSIVLIGATTENPFFEVNKALISRSTVFMLKPLEGEDIKEL--------------LKN 169

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
                 RG     + +TDEA   +   S G  R A   L      +E+     I      
Sbjct: 170 ALEDKDRGLGNYEINITDEAMDYLCEVSSGDARTALNSLELAVLTSELGEDGKIDI---- 225

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
                      G D ++        R    G    + ISA +   R +  D    Y+ + 
Sbjct: 226 -----------GIDTIEQCVQKKAIRFDKNGEEHYDNISAFIKSMRGSNPDAAVFYLARA 274

Query: 308 GFIQRTP--RGRLLMPIAWQHLGIDIP 332
            +         R ++  A + +G+  P
Sbjct: 275 IYAGEDVEFLARRIIICASEDVGMANP 301


>gi|328543386|ref|YP_004303495.1| ATPase, AAA family protein [polymorphum gilvum SL003B-26A1]
 gi|326413131|gb|ADZ70194.1| ATPase, AAA family protein [Polymorphum gilvum SL003B-26A1]
          Length = 436

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 80/346 (23%), Positives = 118/346 (34%), Gaps = 57/346 (16%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D         S        LRPR LE+  GQ              K R   L  ++F 
Sbjct: 1   MSDLFSASGLATSGPRPLADRLRPRRLEDVVGQDHLLGPEGTLSRMLKTR--TLGSLIFW 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIH 115
           GPPG GKTT+A+++A    + F   S        + K  + A          +LF+DEIH
Sbjct: 59  GPPGTGKTTIARLLADATDLAFEQISAIFSGVADLKKVFETARARRMGGRGTLLFVDEIH 118

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P MED  + L+    E PS       LSR  ++                
Sbjct: 119 RFNRAQQDSFLPVMEDGTITLVGATTENPSFELNAALLSRSHVM---------------- 162

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTG--LAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
                  +      L+ +++R     G  L +TDEA   +   + G  R A  L   V  
Sbjct: 163 -----TFHPLNAAALERLLERAETEEGKALPLTDEARAVLIRMADGDGRSALTLAEDVWR 217

Query: 232 FAEVAHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGL 289
            A     +    E   A + R A   DK      +L                   ISA  
Sbjct: 218 AA--GEGEVFDAERLQAIVQRRAPIYDKSQDGHYNL-------------------ISALH 256

Query: 290 SEPRDAIEDLIEPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
              R +  D    +  +       P    R L+ +A + +G+  PH
Sbjct: 257 KSVRGSDPDAALYWFCRMLDGGEDPMYLARRLIRMAVEDIGLGDPH 302


>gi|313608683|gb|EFR84519.1| recombination factor protein RarA [Listeria monocytogenes FSL
           F2-208]
          Length = 427

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 71/322 (22%), Positives = 130/322 (40%), Gaps = 37/322 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+ L+E  GQ       K+     KA+   L  ++  GPPG+GKT++A  +A 
Sbjct: 5   PLAYRMRPKALDEIVGQTHLVGKDKIIYRMVKAKQ--LSSMILYGPPGIGKTSIASAIAG 62

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR+ +     K   ++ A    +    +L +DE+HRL    ++ L P +E   + 
Sbjct: 63  STKYAFRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQDFLLPLLESGAI- 121

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           +++G   S   + IN +    I + T++  L     +   I        ++   +  +RG
Sbjct: 122 ILIGATTSNPYIAINPA----IRSRTQIFELKPLTVEDIMI-------TMDRALSDKERG 170

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT--ITREIADAALLRL 253
                + + + A    A  S G  R A   L      +E        IT ++A+  L + 
Sbjct: 171 LGNYDVEIDEVAKKHFATASNGDVRSALNALELAVISSEPNEDGVIHITLDVAEECLQKK 230

Query: 254 --AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
             A DK G    D+  L+   +   G  V              A+  +    +I+ G + 
Sbjct: 231 SLAHDKDGDAHYDV--LSAFQKAVRGSDV------------NAALHYMGR--LIEAGDLV 274

Query: 312 RTPRGRLLMPIAWQHLGIDIPH 333
              R R+L+ +A++ +G+  P 
Sbjct: 275 SISR-RMLV-MAYEDIGLASPQ 294


>gi|254852138|ref|ZP_05241486.1| recombination factor protein RarA [Listeria monocytogenes FSL
           R2-503]
 gi|258605441|gb|EEW18049.1| recombination factor protein RarA [Listeria monocytogenes FSL
           R2-503]
          Length = 422

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 71/322 (22%), Positives = 131/322 (40%), Gaps = 37/322 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+ L+E  GQ       K+     KA+   L  ++  GPPG+GKT++A  +A 
Sbjct: 5   PLAYRMRPKALDEIVGQTHLVGKDKIIYRMVKAKQ--LSSMILYGPPGIGKTSIASAIAG 62

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR+ +     K   ++ A    +    +L +DE+HRL    ++ L P +E   + 
Sbjct: 63  STKYAFRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQDFLLPLLESGAI- 121

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           +++G   S   + IN +    I + T++  L     +   I        ++   +  +RG
Sbjct: 122 ILIGATTSNPYIAINPA----IRSRTQIFELKPLTVEDIMI-------TMDRALSDKERG 170

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT--ITREIADAALLRL 253
                + + + A    A  S G  R A   L      +E        IT ++A+  L + 
Sbjct: 171 LGNYDVEIDEVAKKHFATASNGDVRSALNALELAVISSEPNEDGVIHITLDVAEECLQKK 230

Query: 254 --AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
             A DK G    D+  L+   ++  G  V              A+  +    +I+ G + 
Sbjct: 231 SLAHDKDGDAHYDV--LSAFQKSVRGSDV------------NAALHYMGR--LIEAGDLV 274

Query: 312 RTPRGRLLMPIAWQHLGIDIPH 333
              R R+L+ +A++ +G+  P 
Sbjct: 275 SISR-RMLV-MAYEDIGLASPQ 294


>gi|229105033|ref|ZP_04235687.1| hypothetical protein bcere0019_41690 [Bacillus cereus Rock3-28]
 gi|228678410|gb|EEL32633.1| hypothetical protein bcere0019_41690 [Bacillus cereus Rock3-28]
          Length = 428

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 78/327 (23%), Positives = 125/327 (38%), Gaps = 43/327 (13%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           +      +RP  ++E  GQ       K+     +A       ++  GPPG GKT++A  +
Sbjct: 2   KQPLAHRMRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           A   G  FR  +  V     D+  ++   +     VL +DE+HRL    ++ L P +E  
Sbjct: 60  AGSTGTPFRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESG 118

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
            L L+      P         SR        ++  L    +D   I ++    + E    
Sbjct: 119 LLTLIGATTSNPFHAINSAIRSRC-------QIFELHALTEDDILIGLKRALEDKE---- 167

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR--DFAEVAHAKTITREIADA 248
              +G     + VTDEA    A  S G  R A   L       F     A  IT EIA+ 
Sbjct: 168 ---KGLGEYDVTVTDEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEE 224

Query: 249 ALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
            L + +   DK G    D+  L+   ++  G  V              A+  L    +I+
Sbjct: 225 CLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDV------------NAALHYLAR--LIE 268

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            G +Q    GR L+ +A++ +G+  P 
Sbjct: 269 AGDLQSI--GRRLLIMAYEDIGLASPQ 293


>gi|23502083|ref|NP_698210.1| recombination factor protein RarA [Brucella suis 1330]
 gi|161619161|ref|YP_001593048.1| recombination factor protein RarA [Brucella canis ATCC 23365]
 gi|254704491|ref|ZP_05166319.1| recombination factor protein RarA [Brucella suis bv. 3 str. 686]
 gi|260566265|ref|ZP_05836735.1| ATPase [Brucella suis bv. 4 str. 40]
 gi|261755173|ref|ZP_05998882.1| recombination factor protein RarA [Brucella suis bv. 3 str. 686]
 gi|23348042|gb|AAN30125.1| ATPase, AAA family [Brucella suis 1330]
 gi|161335972|gb|ABX62277.1| AAA ATPase central domain protein [Brucella canis ATCC 23365]
 gi|260155783|gb|EEW90863.1| ATPase [Brucella suis bv. 4 str. 40]
 gi|261744926|gb|EEY32852.1| recombination factor protein RarA [Brucella suis bv. 3 str. 686]
          Length = 437

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 79/348 (22%), Positives = 124/348 (35%), Gaps = 60/348 (17%)

Query: 1   MMDREGLL-SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M D        N  +       LRP+ L E TGQ        V        + +L  ++F
Sbjct: 1   MSDLFSTAADPNADRNRPLADRLRPKHLSEVTGQEHLTGPEGVLTRMI--ASGSLGSMVF 58

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDE 113
            GPPG GKTT+A+++A E  + F   S  + +   DL  +            + +LF+DE
Sbjct: 59  WGPPGTGKTTVARLLAGETDLAFEQISA-IFSGVADLKRVFEAARARRMSGRQTLLFVDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++   P MED  + L+    E PS       LSR                  
Sbjct: 118 IHRFNRAQQDSFLPVMEDGTVILIGATTENPSFELNAALLSR------------------ 159

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTG--LAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
                 +  + ++ E + T+++R  +  G  L + DEA   +   + G  R A  L   V
Sbjct: 160 ---ARVLTFHPHDSESIATLLKRAEEQEGQALPLDDEARASLIRMADGDGRAALTLAEEV 216

Query: 230 RDFAEVAHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISA 287
                V   +          + R A   DK      +L                   ISA
Sbjct: 217 WR--AVRPGEVFDAAKLQDVVQRRAPVYDKSQDGHYNL-------------------ISA 255

Query: 288 GLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                R +  D    Y+ +       P   GR L+ +A + +G+  P 
Sbjct: 256 LHKSVRGSDPDAALYYLSRMFDAGEDPLYIGRRLVRMAVEDIGLADPQ 303


>gi|323701391|ref|ZP_08113065.1| AAA ATPase central domain protein [Desulfotomaculum nigrificans DSM
           574]
 gi|323533650|gb|EGB23515.1| AAA ATPase central domain protein [Desulfotomaculum nigrificans DSM
           574]
          Length = 434

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 73/348 (20%), Positives = 121/348 (34%), Gaps = 53/348 (15%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD   L S+N  Q       +RPR L+E+ GQ       K+   A +A  + L  ++  G
Sbjct: 1   MDLFSL-SQNSLQAAPLAERMRPRNLDEYIGQQHIVGPGKLLRRAIEA--DKLGSIILYG 57

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEI 114
           PPG GKTTLA ++++    +F   +  V +   ++ A +            + + FIDEI
Sbjct: 58  PPGTGKTTLATIISQMTSADFVKINA-VSSGVAEIRAEIKKARDNLNYYGKKTIFFIDEI 116

Query: 115 HRLSI-IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           H L     ++ L  A+E  ++ L+    E P        LSR  +   T         L 
Sbjct: 117 HSLKRGNQQDCLLEAVEKGEVTLIGATTENPYFELNGALLSRSRIFQLTELTADDLKQLV 176

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR- 230
            R                   +RG  +  + +   A   +   + G  R     L     
Sbjct: 177 VR--------------ALQDEERGLGMYKVKLEQAALEHLIDMAGGDARNVLNALELAVL 222

Query: 231 -DFAEVAHAKTITREIADAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISA 287
                    + IT  + + +  +     DK G +  D+                   ISA
Sbjct: 223 STAPGPDGYRHITEAVIEDSTQQRVVRYDKSGDNHYDV-------------------ISA 263

Query: 288 GLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +   R +  D    Y  +        R   R L+  A + +G+  P 
Sbjct: 264 FIKSIRGSDPDAALHYYARMTAAGEDQRFIVRRLIVHASEDIGMADPQ 311


>gi|239994321|ref|ZP_04714845.1| recombination factor protein RarA [Alteromonas macleodii ATCC
           27126]
          Length = 435

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 72/327 (22%), Positives = 119/327 (36%), Gaps = 47/327 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP T+E+++GQ       K   +  +A       ++  GPPG GKTTLA+++A+
Sbjct: 10  PLAARMRPVTIEQYSGQEHLLGEGKPLRKMLEAGH--CHSMILWGPPGTGKTTLAELIAQ 67

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAME 130
               +    S  V +   D+ A +   E       R +LF+DE+HR +   ++   P +E
Sbjct: 68  YTKASVLRISA-VTSGVKDIRAAMDTAEENARYNQRTLLFVDEVHRFNKSQQDAFLPFVE 126

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
              +  +    E PS    K  LSR  +    T                      E E L
Sbjct: 127 SGVVTFIGATTENPSFELNKALLSRVRVYVLKT---------------------LEHEAL 165

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             ++ R    T   + D A             ++G   RR+  + E+A   T   EI  +
Sbjct: 166 SELIDRALSDTEKGLGDRALGIKETARNALIDLSGGDARRLLTYLELAADFTGANEITVS 225

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ- 307
            +     +K             +A     G    + ISA     R +  D    +  +  
Sbjct: 226 DVEHAVGEK-------------VASYDNKGDTFYDLISAFHKSVRGSDPDAALYWYARIL 272

Query: 308 -GFIQRTPRGRLLMPIAWQHLGIDIPH 333
            G       GR L+ IA + +G   P 
Sbjct: 273 DGGGDALYVGRRLLAIASEDIGNADPR 299


>gi|118086469|ref|XP_418979.2| PREDICTED: similar to Werner helicase interacting protein 1 isoform
           2 [Gallus gallus]
          Length = 562

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 67/343 (19%), Positives = 120/343 (34%), Gaps = 36/343 (10%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           +       LRP TL ++ GQ         L+  +E+       +  ++  GPPG GKTTL
Sbjct: 119 EGQPLADRLRPDTLRDYVGQERVLGAHTLLRSLLES-----HEIPSLILWGPPGCGKTTL 173

Query: 71  AQVVARELGVN--FRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIV 121
           A ++A           T     AK  D+  +++  +        + +LFIDEIHR +   
Sbjct: 174 AHIIANSSKKKGMRFVTLSATSAKTNDVRDVISQAQNEKRLFKRKTILFIDEIHRFNKSQ 233

Query: 122 EEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR----FG 175
           ++   P +E   + L+    E PS +     LSR  +I            +  R     G
Sbjct: 234 QDTFLPHVECGTVTLIGATTENPSFQVNAALLSRCRVIVLEKLSVEAMEAILLRAVKSLG 293

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
           + +     +     T   + +    + + ++A   +A    G  R     L+        
Sbjct: 294 VQVLGQGNQHSSSATGSSKESSELPVYIEEKALSTLAYLCDGDARTGLNGLQLAVQARLA 353

Query: 236 AHAKT----ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
           A   T          +  L+     K G  +  + Y      ++         ISA    
Sbjct: 354 AGKTTLLSFTEGCSVNGVLITEEHVKEGLQRSHILYDRAGEEHYNC-------ISALHKS 406

Query: 292 PRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
            R + E+    ++ +       P    R L+  A + +G+  P
Sbjct: 407 MRGSDENASLYWLARMLEGGEDPLYVARRLVRFASEDIGLADP 449


>gi|213027867|ref|ZP_03342314.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 316

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 74/326 (22%), Positives = 111/326 (34%), Gaps = 40/326 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP  L ++ GQ    +  K    A +A    L  ++  GPPG GKTTLA+V+AR
Sbjct: 15  PLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIAR 72

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
               +    S        I +A + A    N   R +LF+DE+HR +   ++   P +ED
Sbjct: 73  YASADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED 132

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             +  +    E PS       LSR  +    +        + D                 
Sbjct: 133 GTITFIGATTENPSFELNSALLSRARVYLLKSLTTDDIEQVLD--------------QAM 178

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
               RG     + + DE    IA    G  R A   L  + D AE   +          A
Sbjct: 179 QDKTRGYGDQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEADDSGKRVL---LPA 235

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           LL     +              AR    G    + ISA     R +  D    +  +   
Sbjct: 236 LLTEIAGERS------------ARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIIT 283

Query: 310 IQRTPR--GRLLMPIAWQHLGIDIPH 333
               P    R  + IA + +G   P 
Sbjct: 284 AGGDPLYVARRCLAIASEDVGNADPR 309


>gi|291457478|ref|ZP_06596868.1| replication-associated recombination protein A [Bifidobacterium
           breve DSM 20213]
 gi|291381313|gb|EFE88831.1| replication-associated recombination protein A [Bifidobacterium
           breve DSM 20213]
          Length = 459

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 87/362 (24%), Positives = 130/362 (35%), Gaps = 69/362 (19%)

Query: 2   MDREGLLSRNVSQED---ADISLLRPRTLEEFTGQVEACSNLKVFIE----AAKARAEAL 54
           M    L     + E         +RPRTL+E  GQ +              A+K    A 
Sbjct: 1   MSENDLFGAADAPESMTRPLAVRMRPRTLDEVIGQTQVLGQGSPLHRLANPASKGSLTAP 60

Query: 55  DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------D 107
             V+  GPPG+GKTTLA +VA + G  F   S  V +   D+  +LT   +R        
Sbjct: 61  SSVILFGPPGVGKTTLATIVAGQSGRVFEELSA-VTSGVKDVRDVLTRAHERLVSRGQET 119

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGL 165
           VLFIDE+HR S   ++ L PA+E+  +  +    E PS   +K  LSR  ++   +    
Sbjct: 120 VLFIDEVHRFSKSQQDALLPAVENRDVTFIGATTENPSFSVIKPLLSRSVVVKLESLEPN 179

Query: 166 -----LTNPLQDRFGIPIRLNFYEIEDLKTIV-------QRGAKLTGLAVTDEAACEIAM 213
                +   L D  G+   +     E +  IV       ++   +   A       E   
Sbjct: 180 QLTELVQRALADERGLKGEVKA-TDEAVADIVRMAGGDARKSLTILEAAAGAVTGDEARK 238

Query: 214 RSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIAR 273
           +    P I   ++  V D A V                    DK G D  D+        
Sbjct: 239 KGARRPIITPDIVSTVMDTATVR------------------YDKDGDDHYDV-------- 272

Query: 274 NFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
                      ISA +   R +  D    Y+ +       PR   R +M  A + +G+  
Sbjct: 273 -----------ISAFIKSMRGSDPDATIHYLARMLKAGEDPRFIARRIMIAASEEVGLAA 321

Query: 332 PH 333
           P 
Sbjct: 322 PQ 323


>gi|167762677|ref|ZP_02434804.1| hypothetical protein BACSTE_01035 [Bacteroides stercoris ATCC
           43183]
 gi|167699017|gb|EDS15596.1| hypothetical protein BACSTE_01035 [Bacteroides stercoris ATCC
           43183]
          Length = 422

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 81/330 (24%), Positives = 126/330 (38%), Gaps = 53/330 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP+TL+E+ GQ        V  +   A    +   +  GPPG+GKTTLAQ++A 
Sbjct: 3   PLAERLRPKTLDEYIGQKHLVGPGAVLRKMIDA--GRISSFILWGPPGVGKTTLAQIIAN 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAM 129
           +L   F + S  V +   D+  ++   +          +LFIDEIHR S   ++ L  A+
Sbjct: 61  KLETPFYTLSA-VTSGVKDVRDVIDRAKSNRFFSQASPILFIDEIHRFSKSQQDSLLGAV 119

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E   + L+    E PS   ++  LSR  L    +        L  R              
Sbjct: 120 EQGTVTLIGATTENPSFEVIRPLLSRCQLYVLKSLEKDDLLELLQR-------------A 166

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           + T VQ   K   + + +  A  +   S G  R    +L  V   +E A    IT E+  
Sbjct: 167 ITTDVQ--LKERQIELKETTA--MLRYSGGDARKLLNILDLVVQ-SETADPVVITDEMVT 221

Query: 248 AALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
             L +   A DK G    D+                   ISA +   R +  D    ++ 
Sbjct: 222 ERLQQNPLAYDKDGEMHYDI-------------------ISAFIKSIRGSDPDGAIYWLA 262

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +       P    R L+  A + +G+  P+
Sbjct: 263 RMVEGGEDPAFIARRLVISASEDIGLANPN 292


>gi|254829727|ref|ZP_05234382.1| recombination factor protein RarA [Listeria monocytogenes 10403S]
          Length = 427

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 72/322 (22%), Positives = 131/322 (40%), Gaps = 37/322 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+ L+E  GQ       K+     KA+   L  ++  GPPG+GKT++A  +A 
Sbjct: 5   PLAYRMRPKALDEIVGQTHLVGKDKIINRMVKAKQ--LSSMILYGPPGIGKTSIASAIAG 62

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR+ +     K   ++ A    +    +L +DE+HRL    ++ L P +E   + 
Sbjct: 63  STKYAFRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQDFLLPLLESGAI- 121

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           +++G   S   + IN +    I + T+V  L     +   I        ++   +  +RG
Sbjct: 122 ILIGATTSNPYIAINPA----IRSRTQVFELKPLTVEDIMI-------TMDRALSDKERG 170

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT--ITREIADAALLRL 253
                + + + A    A  S G  R A   L      +E        IT ++A+  L + 
Sbjct: 171 LGNYDVEIDEVAKKHFATASNGDVRSALNALELAVISSEPNEDGVIHITLDVAEECLQKK 230

Query: 254 --AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
             A DK G    D+  L+   ++  G  V              A+  +    +I+ G + 
Sbjct: 231 SLAHDKDGDAHYDV--LSAFQKSVRGSDV------------NAALHYMGR--LIEAGDLV 274

Query: 312 RTPRGRLLMPIAWQHLGIDIPH 333
              R R+L+ +A++ +G+  P 
Sbjct: 275 SISR-RMLV-MAYEDIGLASPQ 294


>gi|16800617|ref|NP_470885.1| recombination factor protein RarA [Listeria innocua Clip11262]
 gi|16414036|emb|CAC96780.1| lin1549 [Listeria innocua Clip11262]
          Length = 427

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 72/322 (22%), Positives = 130/322 (40%), Gaps = 37/322 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+ L+E  GQ       K+     KA+   L  ++  GPPG+GKT++A  +A 
Sbjct: 5   PLAYRMRPKALDEIVGQTHLVGKDKIIYRMVKAKQ--LSSMILYGPPGIGKTSIASAIAG 62

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR+ +     K   ++ A    +    +L +DE+HRL    ++ L P +E   + 
Sbjct: 63  STKYAFRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQDFLLPLLESGAI- 121

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           +++G   S   + IN +    I + T++  L     +   I +     + E       RG
Sbjct: 122 ILIGATTSNPYIAINPA----IRSRTQIFELKPLTVEDIMITMDRALLDKE-------RG 170

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT--ITREIADAALLRL 253
                + + + A    A  S G  R A   L      +E        IT ++A+  L + 
Sbjct: 171 LGNYEVEIDEFAKKHFATASNGDVRSALNALELAVISSEPNEDGIIHITLDVAEECLQKK 230

Query: 254 --AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
             A DK G    D+  L+   ++  G  V              A+  +    +I+ G + 
Sbjct: 231 SLAHDKDGDAHYDV--LSAFQKSVRGSDV------------NAALHYMGR--LIEAGDLV 274

Query: 312 RTPRGRLLMPIAWQHLGIDIPH 333
              R R+L+ +A++ +G+  P 
Sbjct: 275 SISR-RMLV-MAYEDIGLANPQ 294


>gi|327189703|gb|EGE56850.1| putative ATPase protein [Rhizobium etli CNPAF512]
          Length = 438

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 79/336 (23%), Positives = 128/336 (38%), Gaps = 51/336 (15%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           +   V+        LRP+TL E TGQ     +  V     +  + +L  ++F GPPG GK
Sbjct: 10  VPEEVAARRPLADRLRPKTLAEVTGQDHLTGDDGVLKRMIE--SGSLGSMIFWGPPGTGK 67

Query: 68  TTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           TT+A++++ E G+ F   S        + K  + A L      + +LF+DEIHR +   +
Sbjct: 68  TTVARLLSGEAGLAFEQISAIFSGVADLKKVFETARLRRMDGRQTLLFVDEIHRFNRAQQ 127

Query: 123 EILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +   P MED  + L+    E PS       LSR  ++   +                   
Sbjct: 128 DSFLPVMEDGTVILVGATTENPSFELNAALLSRARVLTFKS------------------- 168

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
             ++ + L+ +++R      +        E A  S    R+A    R V   AE      
Sbjct: 169 --HDEQSLEELLKRA---EAIEQKPLPLTEEARASLI--RMADGDGRAVLTLAE------ 215

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVG-IETISAGLSEPRDAIEDL 299
              E+  AA    + D  G      R +   A  +     G    ISA     R +  D 
Sbjct: 216 ---EVWRAAREGESFDTEGLT----RIVQRRAPVYDKAQDGHYNLISALHKSVRGSDPDA 268

Query: 300 IEPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
              Y+ +       P   GR L+ +A + +G+  P 
Sbjct: 269 ALYYLARMFDAGEDPLYLGRRLVRMAVEDIGLADPQ 304


>gi|317968012|ref|ZP_07969402.1| recombination factor protein RarA/unknown domain fusion protein
           [Synechococcus sp. CB0205]
          Length = 727

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 85/349 (24%), Positives = 142/349 (40%), Gaps = 52/349 (14%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M D        + Q  A ++  LRPR+L++F GQ E     ++   A  A  + + +++F
Sbjct: 1   MSDLFSHHGEQLRQHHAPLADRLRPRSLDDFQGQEEILGPGRLLRRAINA--DRVGNLIF 58

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFID 112
            GPPG+GKTTLA+++A     +F S +  V+A   DL   +   +        R +LFID
Sbjct: 59  YGPPGVGKTTLARIIAATTRAHFSSLNA-VLAGVKDLRHEVDEAKRRLDQHGLRSLLFID 117

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           E+HR +   ++ L P +E+  + L+    E P     K  +SR  L            PL
Sbjct: 118 EVHRFNSAQQDALLPWVENGTVTLIGATTENPFFEVNKALVSRSRLFRL--------QPL 169

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
           ++R    +      +E      +RG     + ++ EAA  +   + G  R     L    
Sbjct: 170 ENRHLHQL------LERALRDRERGYGERPVQISPEAAAHLVEVAGGDARSLLNALELAV 223

Query: 231 DFAEVAHAK--TITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETIS 286
           +  E        IT  IA+ ++ + A   DK G    D                   TIS
Sbjct: 224 ETTEPDGEGQIVITLAIAEESIQQRAVLYDKQGDAHFD-------------------TIS 264

Query: 287 AGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           A +   R +  D    ++ +       PR   R ++  A + +G+  P 
Sbjct: 265 AFIKSLRGSDPDAALFWLAKMIEAGENPRFIFRRMLISAGEDIGLADPQ 313


>gi|299783213|gb|ADJ41211.1| Recombination ATPase [Lactobacillus fermentum CECT 5716]
          Length = 448

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 75/350 (21%), Positives = 124/350 (35%), Gaps = 63/350 (18%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M++E L S +       ++  +RPR L EF GQ +     KV  E  +   + L  ++  
Sbjct: 1   MEQESLFSASGQGGATPLANRVRPRELAEFFGQDQLVGTGKVLSELIEQ--DRLPSLILW 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEI 114
           GPPG+GKTTLA+++A++    F + S  V +   D+  ++          +R V+FIDEI
Sbjct: 59  GPPGVGKTTLAEIIAQKTKAKFITFSA-VNSSIKDIKQVMEAATANHQFGERTVVFIDEI 117

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++   P +E  ++ L+    E PS       LSR  +                
Sbjct: 118 HRFNKAQQDAFLPYVERGEIILIGATTENPSFELNAALLSRCKVFVLRA----------- 166

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKL------TGLAVTDEAACEIAMRSRGTPRIAGRLL 226
                      +   L  I+ R            + V D     IA  + G  R+A   L
Sbjct: 167 ----------LDKGALVKILHRALHHPNGFADLEITVEDGVLEAIANFANGDARMALNTL 216

Query: 227 RRVRDFAEVAHAKTITREIADAALLRL---AIDKMGFDQLDLRYLTMIARNFGGGPVGIE 283
                  +    +          L        D+ G +  DL                  
Sbjct: 217 EMAVLNGQRNGHQVKLTNADLTQLTSTRSLRYDRAGDEHYDL------------------ 258

Query: 284 TISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
            ISA     R++  D    +  +       P    R L+  A + +G+  
Sbjct: 259 -ISALHKSMRNSDVDAAVYWCSRMLAGGEEPLYIARRLVRFAAEDVGLAD 307


>gi|227515139|ref|ZP_03945188.1| recombination ATPase [Lactobacillus fermentum ATCC 14931]
 gi|227086471|gb|EEI21783.1| recombination ATPase [Lactobacillus fermentum ATCC 14931]
          Length = 448

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 75/350 (21%), Positives = 124/350 (35%), Gaps = 63/350 (18%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M++E L S +       ++  +RPR L EF GQ +     KV  E  +   + L  ++  
Sbjct: 1   MEQESLFSASGQGGATPLANRVRPRELAEFFGQDQLVGTGKVLSELIEQ--DRLPSLILW 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEI 114
           GPPG+GKTTLA+++A++    F + S  V +   D+  ++          +R V+FIDEI
Sbjct: 59  GPPGVGKTTLAEIIAQKTKAKFITFSA-VNSSIKDIKQVMEAATANHQFGERTVVFIDEI 117

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++   P +E  ++ L+    E PS       LSR  +                
Sbjct: 118 HRFNKAQQDAFLPYVERGEIILIGATTENPSFELNAALLSRCKVFVLRA----------- 166

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKL------TGLAVTDEAACEIAMRSRGTPRIAGRLL 226
                      +   L  I+ R            + V D     IA  + G  R+A   L
Sbjct: 167 ----------LDKGALVKILHRALHHPNGFADLEITVEDGVLEAIANFANGDARMALNTL 216

Query: 227 RRVRDFAEVAHAKTITREIADAALLRL---AIDKMGFDQLDLRYLTMIARNFGGGPVGIE 283
                  +    +          L        D+ G +  DL                  
Sbjct: 217 EMAVLNGQRNGHQVKLTNADLTQLTSTRSLRYDRAGDEHYDL------------------ 258

Query: 284 TISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
            ISA     R++  D    +  +       P    R L+  A + +G+  
Sbjct: 259 -ISALHKSMRNSDVDAAVYWCSRMLAGGEEPLYIARRLVRFAAEDVGLAD 307


>gi|189438904|ref|YP_001953985.1| recombination factor protein RarA [Bifidobacterium longum DJO10A]
 gi|32700050|gb|AAP86675.1| putative GTP-binding protein [Bifidobacterium longum subsp.
           infantis]
 gi|189427339|gb|ACD97487.1| ATPase for Holliday junction resolvase [Bifidobacterium longum
           DJO10A]
          Length = 459

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 90/364 (24%), Positives = 132/364 (36%), Gaps = 73/364 (20%)

Query: 2   MDREGLLSRNVSQED---ADISLLRPRTLEEFTGQVEACSNLKVFIE----AAKARAEAL 54
           M    L     + E         +RPRTL+E  GQ +              A+K    A 
Sbjct: 1   MSENDLFGAADAPESMTRPLAVRMRPRTLDEVIGQTQVLGQGSPLRRLANPASKGSLTAP 60

Query: 55  DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------D 107
             V+  GPPG+GKTTLA +VA + G  F   S  V +   D+  +LT   +R        
Sbjct: 61  SSVILFGPPGVGKTTLATIVAGQSGRVFEELSA-VTSGVKDVRDVLTRAHERLVSRGQET 119

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGL 165
           VLFIDE+HR S   ++ L PA+E+  +  +    E PS   +K  LSR  ++   +    
Sbjct: 120 VLFIDEVHRFSKSQQDALLPAVENRDVTFIGATTENPSFSIIKPLLSRSVVVKLES---- 175

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG-----LAVTDEAACEIAMRSRGTPR 220
                             E + L  +VQR           +  TDEA  +I   + G  R
Sbjct: 176 -----------------LEPDQLIELVQRALTDDRGLRGEVKATDEAIADIVRMAGGDAR 218

Query: 221 IAGRLLRRVR-----DFAEVAHAKTITREIADAALLRL----AIDKMGFDQLDLRYLTMI 271
            +  +L         D A    A+         A +        DK G D  D+      
Sbjct: 219 KSLTILEAAAGAVTGDEARKKGARRPIITPEIVATVMDTATVRYDKDGDDHYDV------ 272

Query: 272 ARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGI 329
                        ISA +   R +  D    Y+ +       PR   R +M  A + +G+
Sbjct: 273 -------------ISAFIKSMRGSDPDAAIHYLARMLKAGEDPRFIARRIMIAASEEVGM 319

Query: 330 DIPH 333
             P 
Sbjct: 320 AAPQ 323


>gi|78183967|ref|YP_376402.1| recombination factor protein RarA/unknown domain fusion protein
           [Synechococcus sp. CC9902]
 gi|78168261|gb|ABB25358.1| Recombination protein MgsA [Synechococcus sp. CC9902]
          Length = 733

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 80/332 (24%), Positives = 127/332 (38%), Gaps = 51/332 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RPRTLEEF GQ    +  ++   A KA  + + +++  GPPG+GKTTLA++VA 
Sbjct: 20  PLADRMRPRTLEEFEGQQGILAEGRLLQRAIKA--DRVGNLILHGPPGVGKTTLARIVAN 77

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAM 129
                  S    V+A   DL A +   + R        +LFIDE+HR +   ++ L P +
Sbjct: 78  HT-RAHFSNLNAVLAGVKDLRAEVDAAQQRLERHGLRTILFIDEVHRFNSAQQDALLPWV 136

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E+  + L+    E P     K  +SR  L           + L  R              
Sbjct: 137 ENGTVTLIGATTENPFFEVNKALVSRSRLFRLLPLEPKDLHQLLQR-------------- 182

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT--ITREI 245
             T   RG     + +  +AA  +   + G  R     L    + +E     T  I    
Sbjct: 183 ALTDQDRGYGERSVVLDTDAANHLVDVAGGDARSLLNALELAVESSEPTTDGTIAINLAT 242

Query: 246 ADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           A+ ++ + A   DK G    D                   TISA +   R +  D    +
Sbjct: 243 AEESIQQRAVLYDKQGDAHYD-------------------TISAFIKSLRGSDADAALFW 283

Query: 304 MIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           + +       PR   R ++  A + +G+  P 
Sbjct: 284 LARMVEAGENPRFIFRRMLIAAGEDIGLADPQ 315


>gi|259416571|ref|ZP_05740491.1| recombination factor protein RarA [Silicibacter sp. TrichCH4B]
 gi|259348010|gb|EEW59787.1| recombination factor protein RarA [Silicibacter sp. TrichCH4B]
          Length = 443

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 78/331 (23%), Positives = 129/331 (38%), Gaps = 60/331 (18%)

Query: 17  ADISLLRPRTLEEFTGQVEACS---NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
                LRPRTL E  GQ +       L V + +      +L  ++F GPPG+GKTT+A++
Sbjct: 25  PLADRLRPRTLAEVIGQEQVLGAEAPLGVMLASG-----SLSSLIFWGPPGVGKTTIARL 79

Query: 74  VARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           +A+E  ++F   S      P + K  + A +        +LF+DEIHR +   ++   P 
Sbjct: 80  LAQETDLHFVQISAIFTGVPDLKKVFEAAKIRRQNGQGTLLFVDEIHRFNKAQQDGFLPH 139

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           MED  + L+    E PS       LSR  ++                  +  RL+  ++E
Sbjct: 140 MEDGTILLVGATTENPSFELNAAVLSRSQVL------------------VLERLSLADLE 181

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
            L    ++  +   L +  EA   +   + G  R    L+ +V   A     + + RE  
Sbjct: 182 RLTQRAEKALE-RRLPLLPEARDALHQMADGDGRALLNLIEQV---AAWKVDQPLGREAL 237

Query: 247 DAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
              L+R A   DK G +  +L                   ISA     R +  D    + 
Sbjct: 238 ATRLMRRAAKYDKSGDEHYNL-------------------ISALHKSVRGSDPDAALYWF 278

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +       P+   R L  +A + + +  P 
Sbjct: 279 ARMLEGGEDPKYLARRLTRMAVEDIALADPQ 309


>gi|239620734|ref|ZP_04663765.1| recombination factor protein RarA [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|312132345|ref|YP_003999684.1| atpase for holliday junction resolvase [Bifidobacterium longum
           subsp. longum BBMN68]
 gi|322689648|ref|YP_004209382.1| recombination factor protein RarA [Bifidobacterium longum subsp.
           infantis 157F]
 gi|322691609|ref|YP_004221179.1| recombination factor protein RarA [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|239516310|gb|EEQ56177.1| recombination factor protein RarA [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|311773948|gb|ADQ03436.1| ATPase for Holliday junction resolvase [Bifidobacterium longum
           subsp. longum BBMN68]
 gi|320456465|dbj|BAJ67087.1| recombination factor protein RarA [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320460984|dbj|BAJ71604.1| recombination factor protein RarA [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 459

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 90/364 (24%), Positives = 132/364 (36%), Gaps = 73/364 (20%)

Query: 2   MDREGLLSRNVSQED---ADISLLRPRTLEEFTGQVEACSNLKVFIE----AAKARAEAL 54
           M    L     + E         +RPRTL+E  GQ +              A+K    A 
Sbjct: 1   MSENDLFGAADAPESMTRPLAVRMRPRTLDEVIGQTQVLGQGSPLRRLANPASKGSLTAP 60

Query: 55  DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------D 107
             V+  GPPG+GKTTLA +VA + G  F   S  V +   D+  +LT   +R        
Sbjct: 61  SSVILFGPPGVGKTTLATIVAGQSGRVFEELSA-VTSGVKDVRDVLTRAHERLVSRGQET 119

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGL 165
           VLFIDE+HR S   ++ L PA+E+  +  +    E PS   +K  LSR  ++   +    
Sbjct: 120 VLFIDEVHRFSKSQQDALLPAVENRDVTFIGATTENPSFSIIKPLLSRSVVVKLES---- 175

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG-----LAVTDEAACEIAMRSRGTPR 220
                             E + L  +VQR           +  TDEA  +I   + G  R
Sbjct: 176 -----------------LEPDQLIELVQRALTDDRGLRGEVKATDEAIADIVRMAGGDAR 218

Query: 221 IAGRLLRRVR-----DFAEVAHAKTITREIADAALLRL----AIDKMGFDQLDLRYLTMI 271
            +  +L         D A    A+         A +        DK G D  D+      
Sbjct: 219 KSLTILEAAAGAVTGDEARKKGARRPIITPEIVATVMDTATVRYDKDGDDHYDV------ 272

Query: 272 ARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGI 329
                        ISA +   R +  D    Y+ +       PR   R +M  A + +G+
Sbjct: 273 -------------ISAFIKSMRGSDPDAAIHYLARMLKAGEDPRFIARRIMIAASEEVGM 319

Query: 330 DIPH 333
             P 
Sbjct: 320 AAPQ 323


>gi|227328170|ref|ZP_03832194.1| recombination factor protein RarA [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 447

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 72/326 (22%), Positives = 112/326 (34%), Gaps = 40/326 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP TL ++ GQ       K    A +A    L  ++  GPPG GKTTLA+++  
Sbjct: 15  PLAARMRPATLAQYIGQQHLLGAGKPLPRAIEAGQ--LHSMILWGPPGTGKTTLAELIGH 72

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
               +    S        I +A + A    N   R +LF+DE+HR +   ++   P +ED
Sbjct: 73  YGQADVERISAVTSGIKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED 132

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             +  +    E PS       LSR        RV LL     +     +     + E   
Sbjct: 133 GTITFIGATTENPSFELNSALLSR-------ARVYLLKALTAEDIEQVLLQAMSDSE--- 182

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
               RG     + +  E    +A    G  R A   L  + D AE+          A   
Sbjct: 183 ----RGYGGQNIVLPAETVRMLAELVNGDARRALNSLEMMADMAEIDAQGMRVLTPALLN 238

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
            +         ++ D  Y               + ISA     R +  D    +  +   
Sbjct: 239 EISGERSARFDNKGDRYY---------------DLISALHKSVRGSAPDAALYWYARIIT 283

Query: 310 IQRTPR--GRLLMPIAWQHLGIDIPH 333
               P    R L+ IA + +G   P 
Sbjct: 284 AGGDPLYVARRLLAIASEDVGNADPR 309


>gi|270261177|ref|ZP_06189450.1| hypothetical protein SOD_a04020 [Serratia odorifera 4Rx13]
 gi|270044661|gb|EFA17752.1| hypothetical protein SOD_a04020 [Serratia odorifera 4Rx13]
          Length = 444

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 69/337 (20%), Positives = 117/337 (34%), Gaps = 42/337 (12%)

Query: 8   LSRNVSQED--ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           +S + SQ +     + +RP TL ++ GQ    +  K    A +A    L  ++  GPPG 
Sbjct: 1   MSLDFSQNEFQPLAARMRPTTLAQYIGQQHLLAAGKPLPRAIEAGQ--LHSMILWGPPGT 58

Query: 66  GKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GKTTLA+++ R    +    S        I +A + A    +   R +LF+DE+HR +  
Sbjct: 59  GKTTLAELIGRYGQADVERISAVTSGIKEIREAIERARQNRDAGRRTILFVDEVHRFNKS 118

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++   P +ED  +  +    E PS       LSR  +           + + D      
Sbjct: 119 QQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKALTAEDISQVLD------ 172

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
                          RG     + + +E    ++    G  R A   L  + D AE+   
Sbjct: 173 --------QAMKDNSRGFGGQNIELPEETRRMLSELVGGDARRALNSLEMMADMAEIDAK 224

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
                  +    +         ++ D  Y               + ISA     R +  D
Sbjct: 225 GIRVLTPSLLKEVSGERSARFDNKGDRYY---------------DLISALHKSVRGSAPD 269

Query: 299 LIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
               +  +       P    R L+ IA + +G   P 
Sbjct: 270 AALYWYARIITAGGDPLYVARRLLAIASEDVGNADPR 306


>gi|213691612|ref|YP_002322198.1| AAA ATPase, central domain protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213523073|gb|ACJ51820.1| AAA ATPase, central domain protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320457699|dbj|BAJ68320.1| recombination factor protein RarA [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 465

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 90/360 (25%), Positives = 132/360 (36%), Gaps = 70/360 (19%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIE----AAKARAEALDHVL 58
           D  G+     S        +RPRTL+E  GQ +              A+K    A   V+
Sbjct: 5   DLFGVADAPESMTRPLAVRMRPRTLDEVIGQTQVLGQGSPLRRLANPASKGSLTAPSSVI 64

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFI 111
             GPPG+GKTTLA +VA + G  F   S  V +   D+  +LT   +R        VLFI
Sbjct: 65  LFGPPGVGKTTLATIVAGQSGRVFEELSA-VTSGVKDVRDVLTRAHERLVSRGQETVLFI 123

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+HR S   ++ L PA+E+  +  +    E PS   +K  LSR  ++   +        
Sbjct: 124 DEVHRFSKSQQDALLPAVENRDVTFIGATTENPSFSIIKPLLSRSVVVKLES-------- 175

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAK-----LTGLAVTDEAACEIAMRSRGTPRIAGR 224
                         E + L  +VQR           +  TDEA  +I   + G  R +  
Sbjct: 176 -------------LEPDQLTELVQRALTDDRGLKGEVKATDEAIADIVRMAGGDARKSLT 222

Query: 225 LLRRVR-----DFAEVAHAKTITREIADAALLRL----AIDKMGFDQLDLRYLTMIARNF 275
           +L         D A    A+         A +        DK G D  D+          
Sbjct: 223 ILEAAAGAVTGDEARKKGARRPIITPEIVATVMDTATVRYDKDGDDHYDV---------- 272

Query: 276 GGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                    ISA +   R +  D    Y+ +       PR   R +M  A + +G+  P 
Sbjct: 273 ---------ISAFIKSMRGSDPDAAIHYLARMLKAGEDPRFIARRIMIAASEEVGMAAPQ 323


>gi|163745570|ref|ZP_02152930.1| ATPase, AAA family protein [Oceanibulbus indolifex HEL-45]
 gi|161382388|gb|EDQ06797.1| ATPase, AAA family protein [Oceanibulbus indolifex HEL-45]
          Length = 435

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 76/330 (23%), Positives = 119/330 (36%), Gaps = 58/330 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRPR L E  GQ +               + AL  ++F GPPG+GKTT+A+++A 
Sbjct: 18  PLADRLRPRALVEVIGQDQVLGPDAPL--TVMLASGALSSLIFWGPPGVGKTTIARLLAD 75

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
           E  ++F   S      P + K  D A L        +LF+DEIHR +   ++   P MED
Sbjct: 76  ETDLHFVQISAIFSGVPELRKVFDAAKLRRRQGQGTLLFVDEIHRFNKAQQDGFLPHMED 135

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             + L+    E PS       LSR  ++                            +DL+
Sbjct: 136 GTILLVGATTENPSFELNAAVLSRAQVLVL---------------------ERLPHDDLE 174

Query: 190 TIVQRGAKLT--GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            + QR  +     L +  EA   +   + G  R    L+ +V           + +    
Sbjct: 175 RLAQRAEQELGKPLPLQPEAREALLEMADGDGRALLNLIEQV---TAWKGDGLLDKAGLS 231

Query: 248 AALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
             L+R A   DK G    +L                   ISA     R +  D    ++ 
Sbjct: 232 KRLMRRAAQYDKSGDSHYNL-------------------ISALHKSMRGSDPDAALYWLG 272

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +       PR   R +  +A + +G+  P 
Sbjct: 273 RMLEGGEDPRYLMRRITRMAVEDVGLADPQ 302


>gi|171057447|ref|YP_001789796.1| recombination factor protein RarA [Leptothrix cholodnii SP-6]
 gi|170774892|gb|ACB33031.1| AAA ATPase central domain protein [Leptothrix cholodnii SP-6]
          Length = 447

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 71/323 (21%), Positives = 116/323 (35%), Gaps = 50/323 (15%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
             LRPRTL+E  GQ +     K    A ++R      ++  GPPG+GKTTLA+++A    
Sbjct: 29  ERLRPRTLDEVIGQYDLLDAGKPLRVAFESRQ--PHSMILWGPPGVGKTTLARLMADAFD 86

Query: 80  VNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
             F   S        I +A + A +      R ++F+DE+HR +   ++   P +E    
Sbjct: 87  AQFVQISAVLGGVKEIREAVEQARVAQAQGRRCIVFVDEVHRFNKSQQDAFLPHVESGLF 146

Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
             +    E PS       LSR T+                             +DL+ ++
Sbjct: 147 TFIGATTENPSFEVNSALLSRATVHVL---------------------QPIGEDDLRLLL 185

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           +R       A     A  +          A RLL    +  ++     +  E   A L R
Sbjct: 186 ERACATL--AALAPQASAVTRLIAYADGDARRLLNTYENVVQMVGPGAVIDE---AVLER 240

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
               +             + R   GG    +TISA     R +  D    + ++      
Sbjct: 241 CLGAQ-------------LRRYDKGGEQFYDTISALHKSVRGSDPDAALYWFVRMLDGGV 287

Query: 313 TPR--GRLLMPIAWQHLGIDIPH 333
             R   R L+ +A + +G+  P 
Sbjct: 288 DARYIVRRLVRMASEDIGLADPR 310


>gi|148559570|ref|YP_001259126.1| recombination factor protein RarA [Brucella ovis ATCC 25840]
 gi|163843471|ref|YP_001627875.1| recombination factor protein RarA [Brucella suis ATCC 23445]
 gi|225852702|ref|YP_002732935.1| recombination factor protein RarA [Brucella melitensis ATCC 23457]
 gi|254701946|ref|ZP_05163774.1| recombination factor protein RarA [Brucella suis bv. 5 str. 513]
 gi|254706613|ref|ZP_05168441.1| recombination factor protein RarA [Brucella pinnipedialis
           M163/99/10]
 gi|254710277|ref|ZP_05172088.1| recombination factor protein RarA [Brucella pinnipedialis B2/94]
 gi|256031771|ref|ZP_05445385.1| recombination factor protein RarA [Brucella pinnipedialis
           M292/94/1]
 gi|256061286|ref|ZP_05451436.1| recombination factor protein RarA [Brucella neotomae 5K33]
 gi|256113760|ref|ZP_05454564.1| recombination factor protein RarA [Brucella melitensis bv. 3 str.
           Ether]
 gi|256159941|ref|ZP_05457659.1| recombination factor protein RarA [Brucella ceti M490/95/1]
 gi|256255172|ref|ZP_05460708.1| recombination factor protein RarA [Brucella ceti B1/94]
 gi|256263807|ref|ZP_05466339.1| ATPase [Brucella melitensis bv. 2 str. 63/9]
 gi|256369630|ref|YP_003107140.1| ATPase, AAA family [Brucella microti CCM 4915]
 gi|260168905|ref|ZP_05755716.1| recombination factor protein RarA [Brucella sp. F5/99]
 gi|261222368|ref|ZP_05936649.1| recombination factor protein RarA [Brucella ceti B1/94]
 gi|261314073|ref|ZP_05953270.1| recombination factor protein RarA [Brucella pinnipedialis
           M163/99/10]
 gi|261317839|ref|ZP_05957036.1| recombination factor protein RarA [Brucella pinnipedialis B2/94]
 gi|261325293|ref|ZP_05964490.1| recombination factor protein RarA [Brucella neotomae 5K33]
 gi|261752514|ref|ZP_05996223.1| recombination factor protein RarA [Brucella suis bv. 5 str. 513]
 gi|261758397|ref|ZP_06002106.1| ATPase [Brucella sp. F5/99]
 gi|265988869|ref|ZP_06101426.1| recombination factor protein RarA [Brucella pinnipedialis
           M292/94/1]
 gi|265995120|ref|ZP_06107677.1| recombination factor protein RarA [Brucella melitensis bv. 3 str.
           Ether]
 gi|265998333|ref|ZP_06110890.1| recombination factor protein RarA [Brucella ceti M490/95/1]
 gi|148370827|gb|ABQ60806.1| ATPase, AAA family [Brucella ovis ATCC 25840]
 gi|163674194|gb|ABY38305.1| AAA ATPase central domain protein [Brucella suis ATCC 23445]
 gi|225641067|gb|ACO00981.1| AAA ATPase central domain protein [Brucella melitensis ATCC 23457]
 gi|255999792|gb|ACU48191.1| ATPase, AAA family [Brucella microti CCM 4915]
 gi|260920952|gb|EEX87605.1| recombination factor protein RarA [Brucella ceti B1/94]
 gi|261297062|gb|EEY00559.1| recombination factor protein RarA [Brucella pinnipedialis B2/94]
 gi|261301273|gb|EEY04770.1| recombination factor protein RarA [Brucella neotomae 5K33]
 gi|261303099|gb|EEY06596.1| recombination factor protein RarA [Brucella pinnipedialis
           M163/99/10]
 gi|261738381|gb|EEY26377.1| ATPase [Brucella sp. F5/99]
 gi|261742267|gb|EEY30193.1| recombination factor protein RarA [Brucella suis bv. 5 str. 513]
 gi|262552801|gb|EEZ08791.1| recombination factor protein RarA [Brucella ceti M490/95/1]
 gi|262766233|gb|EEZ12022.1| recombination factor protein RarA [Brucella melitensis bv. 3 str.
           Ether]
 gi|263093935|gb|EEZ17869.1| ATPase [Brucella melitensis bv. 2 str. 63/9]
 gi|264661066|gb|EEZ31327.1| recombination factor protein RarA [Brucella pinnipedialis
           M292/94/1]
 gi|326538935|gb|ADZ87150.1| AAA ATPase central domain protein [Brucella melitensis M5-90]
          Length = 437

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 79/348 (22%), Positives = 124/348 (35%), Gaps = 60/348 (17%)

Query: 1   MMDREGLL-SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M D        N  +       LRP+ L E TGQ        V        + +L  ++F
Sbjct: 1   MSDLFSTAADPNADRNRPLADRLRPKHLSEVTGQEHLTGPEGVLTRMI--ASGSLGSMVF 58

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDE 113
            GPPG GKTT+A+++A E  + F   S  + +   DL  +            + +LF+DE
Sbjct: 59  WGPPGTGKTTVARLLAGETDLAFEQISA-IFSGVADLKRVFEAARARRMSGRQTLLFVDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++   P MED  + L+    E PS       LSR                  
Sbjct: 118 IHRFNRAQQDSFLPVMEDGTVILIGATTENPSFELNAALLSR------------------ 159

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTG--LAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
                 +  + ++ E + T+++R  +  G  L + DEA   +   + G  R A  L   V
Sbjct: 160 ---ARVLTFHPHDSESIATLLKRAEEQEGQALPLDDEARASLIRMADGDGRAALTLAEEV 216

Query: 230 RDFAEVAHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISA 287
                V   +          + R A   DK      +L                   ISA
Sbjct: 217 WR--AVRPGEVFDAAKLQDVVQRRAPVYDKSQDGHYNL-------------------ISA 255

Query: 288 GLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                R +  D    Y+ +       P   GR L+ +A + +G+  P 
Sbjct: 256 LHKSVRGSDPDAALYYLSRMFDAGEDPLYIGRRLVRMAVEDIGLADPQ 303


>gi|218130825|ref|ZP_03459629.1| hypothetical protein BACEGG_02420 [Bacteroides eggerthii DSM 20697]
 gi|217987169|gb|EEC53500.1| hypothetical protein BACEGG_02420 [Bacteroides eggerthii DSM 20697]
          Length = 423

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 80/330 (24%), Positives = 125/330 (37%), Gaps = 53/330 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP+TL+E+ GQ        V  +   A    +   +  GPPG+GKTTLAQ++A 
Sbjct: 3   PLAERLRPKTLDEYIGQKHLVGPGAVLRKMIDA--GRISSFILWGPPGVGKTTLAQIIAN 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAM 129
           +L   F + S  V +   D+  ++   +          +LFIDEIHR S   ++ L  A+
Sbjct: 61  KLETPFYTLSA-VTSGVKDVRDVIDRAKSNRFFSQASPILFIDEIHRFSKSQQDSLLGAV 119

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E   + L+    E PS   ++  LSR  L    +        L  R              
Sbjct: 120 EQGTVTLIGATTENPSFEVIRPLLSRCQLYVLKSLEKDDLLELLQR-------------A 166

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           + T VQ   K   + + +  A  +   S G  R    +L  V   +E      IT E+  
Sbjct: 167 VTTDVQ--LKERQIELRETTA--MLRYSGGDARKLLNILDLVVQ-SEAGDPVVITDEMVT 221

Query: 248 AALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
             L +   A DK G    D+                   ISA +   R +  D    ++ 
Sbjct: 222 ERLQQNPLAYDKDGEMHYDI-------------------ISAFIKSIRGSDPDGAIYWLA 262

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +       P    R L+  A + +G+  P+
Sbjct: 263 RMVEGGEDPAFIARRLVISASEDIGLANPN 292


>gi|260662096|ref|ZP_05862992.1| helicase [Lactobacillus fermentum 28-3-CHN]
 gi|260553479|gb|EEX26371.1| helicase [Lactobacillus fermentum 28-3-CHN]
          Length = 448

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 75/350 (21%), Positives = 124/350 (35%), Gaps = 63/350 (18%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M++E L S +       ++  +RPR L EF GQ +     KV  E  +   + L  ++  
Sbjct: 1   MEQESLFSASGQGGATPLANRVRPRELAEFFGQDQLVGTGKVLSELIEQ--DRLPSLILW 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEI 114
           GPPG+GKTTLA+++A++    F + S  V +   D+  ++          +R V+FIDEI
Sbjct: 59  GPPGVGKTTLAEIIAQKTKAKFITFSA-VNSSIKDIKQVMEAATANHQFGERTVVFIDEI 117

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++   P +E  ++ L+    E PS       LSR  +                
Sbjct: 118 HRFNKAQQDAFLPYVERGEIILIGATTENPSFELNAALLSRCKVFVLRA----------- 166

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKL------TGLAVTDEAACEIAMRSRGTPRIAGRLL 226
                      +   L  I+ R            + V D     IA  + G  R+A   L
Sbjct: 167 ----------LDKGALVKILHRALHHPNGFADLEITVEDGVLEAIANFANGDARMALNTL 216

Query: 227 RRVRDFAEVAHAKTITREIADAALLRL---AIDKMGFDQLDLRYLTMIARNFGGGPVGIE 283
                  +    +          L        D+ G +  DL                  
Sbjct: 217 EMAVLNGQRNGHQVKLTNADLTQLTSTRSLRYDRAGDEHYDL------------------ 258

Query: 284 TISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
            ISA     R++  D    +  +       P    R L+  A + +G+  
Sbjct: 259 -ISALHKSIRNSDVDAAVYWCSRMLAGGEEPLYIARRLVRFAAEDVGLAD 307


>gi|224370722|ref|YP_002604886.1| putative ATPase [Desulfobacterium autotrophicum HRM2]
 gi|223693439|gb|ACN16722.1| putative ATPase [Desulfobacterium autotrophicum HRM2]
          Length = 451

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 80/354 (22%), Positives = 133/354 (37%), Gaps = 60/354 (16%)

Query: 2   MDREGLLSRNVSQE----DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M+ + L      +E          +RP+ L E  GQ    +  K+   A     + +   
Sbjct: 1   MEMD-LFDGGEDEEGSPFRPLADRMRPQRLGEVVGQDHVAAPGKILHSAI--TNDRVFST 57

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLF 110
           +  GPPG GKTTLA ++A+E   +F   S  V++   D+ A++   ++       R ++F
Sbjct: 58  ILWGPPGCGKTTLAGIIAKETSSHFMQLSA-VLSGVKDIRAVIETAKEQRRIRGRRTLVF 116

Query: 111 IDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +DEIHR +   ++     +E   + L+    E PS   +   +SR  +I          N
Sbjct: 117 VDEIHRFNKAQQDAFLHHVETGAIVLVGATTENPSFEVIPALVSRCRVITL--------N 168

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            L +R  + I      +E   T   RG    G+  + EA   IA  + G  R A   L  
Sbjct: 169 RLGERDIVTI------LERAATDPVRGLGSLGIIFSAEALNYIAATADGDVRAALATLET 222

Query: 229 VRDFAEVAHA------KTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPV 280
           +  +A             IT E   AA+ + A   DK G +                   
Sbjct: 223 IGVYASARKGAGGKTPSAITPEDVAAAVEKKALRYDKSGEEH------------------ 264

Query: 281 GIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRG--RLLMPIAWQHLGIDIP 332
               ISA     R +  D    ++ +       P    R ++  A + +G+  P
Sbjct: 265 -FNLISAFHKSLRGSDPDGAIYWLERMMAAGEDPLYLIRRMVRFATEDVGVADP 317


>gi|184155391|ref|YP_001843731.1| recombination factor protein RarA [Lactobacillus fermentum IFO
           3956]
 gi|183226735|dbj|BAG27251.1| helicase [Lactobacillus fermentum IFO 3956]
          Length = 448

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 75/350 (21%), Positives = 124/350 (35%), Gaps = 63/350 (18%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M++E L S +       ++  +RPR L EF GQ +     KV  E  +   + L  ++  
Sbjct: 1   MEQESLFSASGQGGATPLANRVRPRELAEFFGQDQLVGTGKVLSELIEQ--DRLPSLILW 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEI 114
           GPPG+GKTTLA+++A++    F + S  V +   D+  ++          +R V+FIDEI
Sbjct: 59  GPPGVGKTTLAEIIAQKTKAKFITFSA-VNSSIKDIKQVMEAATANHQFGERTVVFIDEI 117

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++   P +E  ++ L+    E PS       LSR  +                
Sbjct: 118 HRFNKAQQDAFLPYVERGEIILIGATTENPSFELNAALLSRCKVFVLRA----------- 166

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKL------TGLAVTDEAACEIAMRSRGTPRIAGRLL 226
                      +   L  I+ R            + V D     IA  + G  R+A   L
Sbjct: 167 ----------LDKGALVKILHRALHHPNGFADLEITVEDGVLEAIANFANGDARMALNTL 216

Query: 227 RRVRDFAEVAHAKTITREIADAALLRL---AIDKMGFDQLDLRYLTMIARNFGGGPVGIE 283
                  +    +          L        D+ G +  DL                  
Sbjct: 217 EMAVLNGQRNGHQVKLTNADLTQLTSTRSLRYDRAGDEHYDL------------------ 258

Query: 284 TISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
            ISA     R++  D    +  +       P    R L+  A + +G+  
Sbjct: 259 -ISALHKSIRNSDVDAAVYWCSRMLAGGEEPLYIARRLVRFAAEDVGLAD 307


>gi|323142310|ref|ZP_08077142.1| replication-associated recombination protein A
           [Phascolarctobacterium sp. YIT 12067]
 gi|322413194|gb|EFY04081.1| replication-associated recombination protein A
           [Phascolarctobacterium sp. YIT 12067]
          Length = 428

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 72/340 (21%), Positives = 117/340 (34%), Gaps = 50/340 (14%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            L      Q       +RP  L +F GQ  A           +   + L  VLF GPPG 
Sbjct: 7   NLFETEKRQTKPLADRMRPERLSDFVGQESAVGAGSPLRRMIER--DVLQSVLFYGPPGT 64

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLS 118
           GKTTLA+V+A   G  F + +  V +   +L  L+   ++       R ++FIDEIHR +
Sbjct: 65  GKTTLAKVIAHVTGEKFEAINA-VSSGVPELRKLIAKAQEDRRSGRGRTIVFIDEIHRFN 123

Query: 119 IIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
              +++L P +E+  + L+    E P        LSR  ++            + +R   
Sbjct: 124 KAQQDVLLPYVENGTIVLIGATTENPFFEINSPLLSRMKVVRLEKLQAPQIQQILER--- 180

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
                           +RG          EA   IA  + G  R A  +L +        
Sbjct: 181 -----------AIADPERGFG-NSFKAEPEALRIIADFAAGDARSALNILEQAEFMLPEE 228

Query: 237 HAKTITREIADA--ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRD 294
             + +T     +         DK G    D   ++   ++  GG                
Sbjct: 229 GERVLTVATLRSVIGTALQRYDKKGDQHYD--IISAFIKSMRGGDA-------------- 272

Query: 295 AIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
              D    Y+ +        R   R ++  A + +G+  P
Sbjct: 273 ---DAALHYLARMIEGGEDVRFVARRVVICAAEDVGLADP 309


>gi|258653471|ref|YP_003202627.1| ATPase AAA central domain-containing protein [Nakamurella
           multipartita DSM 44233]
 gi|258556696|gb|ACV79638.1| AAA ATPase central domain protein [Nakamurella multipartita DSM
           44233]
          Length = 494

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 76/327 (23%), Positives = 115/327 (35%), Gaps = 37/327 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RPRTL+E  GQ                +  A   +L  GPPG GKTTLA +VA 
Sbjct: 42  PLAARMRPRTLDEVVGQQHLLGPGAPLRR--LVQGGAPSSMLLYGPPGTGKTTLATLVAG 99

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAM 129
             G  F   S  V A   ++ A++           ++ VLFIDE+HR S   ++ L  A+
Sbjct: 100 STGRFFAQLSA-VSAGVKEVRAVIAEATTRLRRTGEQTVLFIDEVHRFSRTQQDSLLGAV 158

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ED  + L+    E P    V   LSR  ++          + L DR              
Sbjct: 159 EDRTIVLVAATTENPFFSVVSPLLSRSLILQLQPLTDTDISELIDR-------------- 204

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
                +RG           A             +AG   RR     E +       +  D
Sbjct: 205 -AVADERGL--------AGAFTLAEPARAHLVALAGGDARRALTALEASAESVRELDAPD 255

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           +      + ++  D ++        R    G    +  SA +   R +  D    Y+ + 
Sbjct: 256 SDDDPAGVLEIDLDAVERAVNRAAVRYDRSGDQHYDVTSAFIKSIRGSDVDAALHYLARM 315

Query: 308 GFIQRTPR--GRLLMPIAWQHLGIDIP 332
                 PR   R LM  A + +G+  P
Sbjct: 316 IEAGEDPRFIARRLMVHASEDVGMADP 342


>gi|206969731|ref|ZP_03230685.1| ATPase, AAA family [Bacillus cereus AH1134]
 gi|228941567|ref|ZP_04104116.1| hypothetical protein bthur0008_42040 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228974497|ref|ZP_04135064.1| hypothetical protein bthur0003_42500 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228981091|ref|ZP_04141392.1| hypothetical protein bthur0002_42520 [Bacillus thuringiensis Bt407]
 gi|206735419|gb|EDZ52587.1| ATPase, AAA family [Bacillus cereus AH1134]
 gi|228778632|gb|EEM26898.1| hypothetical protein bthur0002_42520 [Bacillus thuringiensis Bt407]
 gi|228785214|gb|EEM33226.1| hypothetical protein bthur0003_42500 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228818123|gb|EEM64199.1| hypothetical protein bthur0008_42040 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|326942181|gb|AEA18077.1| recombination factor protein RarA [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 428

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 78/327 (23%), Positives = 125/327 (38%), Gaps = 43/327 (13%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           +      +RP  ++E  GQ       K+     +A       ++  GPPG GKT++A  +
Sbjct: 2   KQPLAHRMRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           A   G  FR  +  V     D+  ++   +     VL +DE+HRL    ++ L P +E  
Sbjct: 60  AGSTGTPFRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESG 118

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
            L L+      P         SR        ++  L    +D   I ++    + E    
Sbjct: 119 LLTLIGATTSNPFHAINSAIRSRC-------QIFELHALTEDDILIGLKRALEDKE---- 167

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR--DFAEVAHAKTITREIADA 248
              +G     + VTDEA    A  S G  R A   L       F     A  IT EIA+ 
Sbjct: 168 ---KGLGEYAVTVTDEALHHFANASGGDMRSAYNALELAVLSSFTTDDQAAEITLEIAEE 224

Query: 249 ALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
            L + +   DK G    D+  L+   ++  G  V              A+  L    +I+
Sbjct: 225 CLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDV------------NAALHYLAR--LIE 268

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            G +Q    GR L+ +A++ +G+  P 
Sbjct: 269 AGDLQSI--GRRLLIMAYEDIGLASPQ 293


>gi|49474377|ref|YP_032419.1| recombination factor protein RarA [Bartonella quintana str.
           Toulouse]
 gi|49239881|emb|CAF26279.1| ATPase, aaa family [Bartonella quintana str. Toulouse]
          Length = 439

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 79/340 (23%), Positives = 128/340 (37%), Gaps = 59/340 (17%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
               V+++      +RPR+L++ TGQ        +      A   ++  ++F GPPG GK
Sbjct: 10  FDLQVNKKRPLPERMRPRSLKDVTGQNHLLGEKGLLSRMVVA--GSIGSMIFWGPPGTGK 67

Query: 68  TTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           TT+A+++A E    F   S        + K  ++A        + +LF+DEIHR +   +
Sbjct: 68  TTVARLLALEKEFAFEQVSAIFTGVSELKKIFEVAQARFMSGCKMLLFVDEIHRFNRAQQ 127

Query: 123 EILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +   P MED  + L+    E PS       LSR                        +  
Sbjct: 128 DSFLPFMEDGTVILIGATTENPSFELNAALLSR---------------------ARVLTF 166

Query: 181 NFYEIEDLKTIVQRGAKLTG--LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA---EV 235
             ++ E L  +++R  K+ G  L + D+A   +   S G  R A  L   V   A   E+
Sbjct: 167 LPHDNESLSMLLKRAEKVEGKILPLDDDARDVLIGMSDGDARAALTLAEEVWSVAQPGEI 226

Query: 236 AHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDA 295
             A T+ + I   A      DK      +L                   ISA     R +
Sbjct: 227 FDAGTLQKIIQRRA---PIYDKGRDGHYNL-------------------ISALHKSVRGS 264

Query: 296 IEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
             D    Y+ +       P   GR L+ +A + +G+  P 
Sbjct: 265 DPDAALYYLARMFDAGEDPLYIGRRLVRMAVEDVGLADPQ 304


>gi|296504892|ref|YP_003666592.1| recombination factor protein RarA [Bacillus thuringiensis BMB171]
 gi|296325944|gb|ADH08872.1| recombination factor protein RarA [Bacillus thuringiensis BMB171]
          Length = 428

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 76/327 (23%), Positives = 124/327 (37%), Gaps = 43/327 (13%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           +      +RP  ++E  GQ       K+     +A       ++  GPPG GKT++A  +
Sbjct: 2   KQPLAHRMRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           A   G  FR  +  V     D+  ++   +     VL +DE+HRL    ++ L P +E  
Sbjct: 60  AGSTGTPFRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESG 118

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
            L L+      P         SR  +           + L +   +       E +    
Sbjct: 119 LLTLIGATTSNPFHAINSAIRSRCQIFEL--------HALTEEDILIGLKRALEDK---- 166

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR--DFAEVAHAKTITREIADA 248
             ++G     + VTDEA    A  S G  R A   L       F     A  IT EIA+ 
Sbjct: 167 --EKGLGEYAVTVTDEALHHFANASGGDMRSAYNALELAVLSSFTTDDQAAEITLEIAEE 224

Query: 249 ALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
            L + +   DK G    D+  L+ + ++  G  V              A+  L    +I+
Sbjct: 225 CLQKKSFVHDKGGDAHYDV--LSALQKSVRGSDV------------NAALHYLAR--LIE 268

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            G +Q    GR L+ +A++ +G+  P 
Sbjct: 269 AGDLQSI--GRRLLIMAYEDIGLASPQ 293


>gi|85706692|ref|ZP_01037784.1| ATPase, AAA family protein [Roseovarius sp. 217]
 gi|85668750|gb|EAQ23619.1| ATPase, AAA family protein [Roseovarius sp. 217]
          Length = 435

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 73/330 (22%), Positives = 121/330 (36%), Gaps = 58/330 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRPR L +  GQ +               + +L  ++F GPPG+GKTT+A+++A 
Sbjct: 19  PLADRLRPRRLTDVIGQDQVLGPEAPL--GVMLASGSLSSLVFWGPPGVGKTTIARLLAD 76

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
           E  ++F   S      P + K  + A          +LF+DEIHR +   ++   P MED
Sbjct: 77  ETDLHFIQISAIFTGVPELRKVFEEAKHRRTQGRGTLLFVDEIHRFNKAQQDGFLPHMED 136

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             + L+    E PS       LSR  ++  T  V                     + DL+
Sbjct: 137 GTILLVGATTENPSFELNAALLSRAQVLVLTRLV---------------------LADLE 175

Query: 190 TIVQRGAKLTG--LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            + QR  +     L +   A   +   + G  R    L+ +V   A       +      
Sbjct: 176 RLAQRAEQELSRALPLDGPAREALLEMADGDGRALLNLIEQV---AAWKVEGKLDSSALA 232

Query: 248 AALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
             L++ A   DK G +  +L                   ISA     R +  D    ++ 
Sbjct: 233 TRLMKRAAKYDKSGDEHYNL-------------------ISALHKSVRGSDPDAALYWLA 273

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +       PR   R ++ +A + +G+  P 
Sbjct: 274 RMLTGGEDPRYLARRILRMAIEDIGLADPQ 303


>gi|33239543|ref|NP_874485.1| recombination factor protein RarA [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|33237068|gb|AAP99137.1| ATPase [Prochlorococcus marinus subsp. marinus str. CCMP1375]
          Length = 446

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 66/336 (19%), Positives = 128/336 (38%), Gaps = 43/336 (12%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
              + +       LRP  ++EF GQ    +  ++   A +A  + + +++F GPPG+GKT
Sbjct: 11  DEQIQRNAPLADRLRPTKIDEFVGQDAILAEGRLLRRAIEA--DRVGNLIFHGPPGVGKT 68

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIV 121
           TLA+++A     ++ S    V+    ++   + +  +R        +LF+DE+HR +   
Sbjct: 69  TLAKIIA-ANTRSYFSVLNAVLVGVKEIRKEVEDARERLGRYGLKTILFLDEVHRFNSAQ 127

Query: 122 EEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           ++ L P +E+    L+    E P     K  +SR  +   T       + L  R      
Sbjct: 128 QDALLPWVENGTFILIGATTENPYFEVNKALVSRSRIFRLTPIEPHHLHKLLVR------ 181

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
                     +  ++G     + ++ +AA  +   + G  R     L    +   +    
Sbjct: 182 --------ALSDSEKGFGKKQVKLSSDAANHLVDVANGDARSLLNALELAVETTAIDAKG 233

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            I  ++  A        +    Q  + Y          G    +TISA +   R +  D 
Sbjct: 234 VINIDLQIA--------EESIQQRAVLY-------DKEGDAHFDTISAFIKSMRGSDPDA 278

Query: 300 IEPYMIQQGFIQRTPRG--RLLMPIAWQHLGIDIPH 333
              +M +       PR   R ++  A + +G+  P 
Sbjct: 279 SLFWMARMLEAGENPRYIFRRMLIAASEDIGLADPQ 314


>gi|68536116|ref|YP_250821.1| recombination factor protein RarA [Corynebacterium jeikeium K411]
 gi|68263715|emb|CAI37203.1| conserved hypothetical protein [Corynebacterium jeikeium K411]
          Length = 464

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 77/326 (23%), Positives = 121/326 (37%), Gaps = 49/326 (15%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            +RPR+L+E  GQ +                +    V+  GPPG GKTT+A ++++  G 
Sbjct: 40  RMRPRSLDEVVGQDKVLGPGSPLRRLIDGHGDT--SVILYGPPGTGKTTIASLISQVSGR 97

Query: 81  NFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQL 134
            F + S  + +   ++ A++     R       VLFIDE+HR S   ++ L  A+E+  +
Sbjct: 98  RFEALSA-LNSGVKEVRAIIEQARKRLVLGEHTVLFIDEVHRFSKTQQDALLSAVENRTV 156

Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            L+    E PS   V   LSR  L+  +T                         D++T++
Sbjct: 157 LLVAATTENPSFSVVSPLLSRSLLVQLST---------------------LSDADIRTVL 195

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           QR          D      A R R TP    +L   V   A  A       E A   L  
Sbjct: 196 QRALD------DDRG---YAGRLRVTPDAMEQL---VAMAAGDARRSLTYLEAAAEGLEP 243

Query: 253 LAIDKMGF---DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
              D +      Q+       + R    G    +  SA +   R +  D    Y+ +   
Sbjct: 244 DGEDGVAELVASQVKRSLNKAVVRYDRDGDQHYDITSAFIKSIRGSDPDAALHYLARMLE 303

Query: 310 IQRTPR--GRLLMPIAWQHLGIDIPH 333
               PR   R L+  A + +G+  P 
Sbjct: 304 GGEDPRFIARRLVIHASEDVGMADPQ 329


>gi|223937388|ref|ZP_03629293.1| AAA ATPase central domain protein [bacterium Ellin514]
 gi|223893939|gb|EEF60395.1| AAA ATPase central domain protein [bacterium Ellin514]
          Length = 457

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 74/331 (22%), Positives = 123/331 (37%), Gaps = 51/331 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RPR L E+ GQ       ++   A +A  + +  ++F GPPG GKT+LAQ++A 
Sbjct: 30  PLAARMRPRNLSEYIGQSHILGPGQLLRRAIEA--DRIQSLIFYGPPGTGKTSLAQIIAL 87

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAM 129
           +    F   SG V +   D+  +L+   +R        +LF+DEIHR +   +++L P +
Sbjct: 88  QTSSKFERLSG-VESNVADMRRVLSAASNRLENTGQPTILFVDEIHRFNKSQQDVLLPDV 146

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E   + L+      P        +SR  +             L  R              
Sbjct: 147 ESGVIRLIGATTHNPFFFVNSPLVSRSQIFELRPLTEEELYQLLQRS------------- 193

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR--RVRDFAEVAHAKTITREI 245
                +RG     + V + A   +A  S G  R A   L    +    E      I   +
Sbjct: 194 -LQDPERGLGYMKIHVDEAALRHLAKLSDGDARKALNSLEIAALTTSPEANGIIHIDLAV 252

Query: 246 ADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           A+ ++ R A   D  G    D                   TISA +   R +  D    +
Sbjct: 253 AEQSIQRKAVVYDGDGDAHYD-------------------TISAFIKSMRGSDADATLYW 293

Query: 304 MIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           + +       PR   R ++  A + +G+  P
Sbjct: 294 LAKMIHAGEDPRFISRRIVICAAEDVGLADP 324


>gi|319902448|ref|YP_004162176.1| Recombination protein MgsA [Bacteroides helcogenes P 36-108]
 gi|319417479|gb|ADV44590.1| Recombination protein MgsA [Bacteroides helcogenes P 36-108]
          Length = 422

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 79/330 (23%), Positives = 122/330 (36%), Gaps = 53/330 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP+TLEE+ GQ        V  +   A    +   +  GPPG+GKTTLAQ++A 
Sbjct: 3   PLAERLRPKTLEEYIGQKHLVGPGAVLRKMIDA--GRISSFILWGPPGVGKTTLAQIIAN 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAM 129
           +L   F + S  V +   D+  ++   +          +LFIDEIHR S   ++ L  A+
Sbjct: 61  KLDTPFYTLSA-VTSGVKDVRDVIERAKGNRFFSQASPILFIDEIHRFSKSQQDSLLGAV 119

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E   + L+    E PS   ++  LSR  L    +        L  R              
Sbjct: 120 EQGTVTLIGATTENPSFEVIRPLLSRCQLYVLKSLEKDDLLELLQR-------------- 165

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
               V   A L    +  +    +   S G  R    +L  V + +E      IT E+  
Sbjct: 166 ---AVTTDAVLRERKIELKETTAMLRFSGGDARKLLNILELVVE-SEADDPVVITDEMVT 221

Query: 248 AALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
             L +   A DK G    D+                   ISA +   R +  D    ++ 
Sbjct: 222 ERLQQNPLAYDKDGEMHYDI-------------------ISAFIKSIRGSDPDGAIYWLA 262

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +       P    R L+  A + +G+  P+
Sbjct: 263 RMVEGGEDPAFIARRLVISASEDIGLANPN 292


>gi|254714274|ref|ZP_05176085.1| recombination factor protein RarA [Brucella ceti M644/93/1]
 gi|254717711|ref|ZP_05179522.1| recombination factor protein RarA [Brucella ceti M13/05/1]
 gi|261219553|ref|ZP_05933834.1| recombination factor protein RarA [Brucella ceti M13/05/1]
 gi|261322048|ref|ZP_05961245.1| recombination factor protein RarA [Brucella ceti M644/93/1]
 gi|260924642|gb|EEX91210.1| recombination factor protein RarA [Brucella ceti M13/05/1]
 gi|261294738|gb|EEX98234.1| recombination factor protein RarA [Brucella ceti M644/93/1]
          Length = 437

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 79/348 (22%), Positives = 124/348 (35%), Gaps = 60/348 (17%)

Query: 1   MMDREGLL-SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M D        N  +       LRP+ L E TGQ        V        + +L  ++F
Sbjct: 1   MSDLFSTAADPNADRNRPLADRLRPKHLSEVTGQEHLTGPEGVLTRMI--ASGSLGSMVF 58

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDE 113
            GPPG GKTT+A+++A E  + F   S  + +   DL  +            + +LF+DE
Sbjct: 59  WGPPGTGKTTVARLLAGETDLAFEQISA-IFSGVADLKRVFEAARARRMSGRQTLLFVDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++   P MED  + L+    E PS       LSR                  
Sbjct: 118 IHRFNRAQQDSFLPVMEDGTVILIGATTENPSFELNAALLSR------------------ 159

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTG--LAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
                 +  + ++ E + T+++R  +  G  L + DEA   +   + G  R A  L   V
Sbjct: 160 ---ARVLTFHPHDSESIATLLKRAEEQEGQALPLDDEARASLIRMADGDGRAALTLAEEV 216

Query: 230 RDFAEVAHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISA 287
                V   +          + R A   DK      +L                   ISA
Sbjct: 217 WR--AVRPGEVFDAAKLQDVVQRRAPVYDKSQDGHYNL-------------------ISA 255

Query: 288 GLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                R +  D    Y+ +       P   GR L+ +A + +G+  P 
Sbjct: 256 LHKSVRGSDPDAALYYLSRMFDAGEDPLYIGRRLVRMAVEDIGLADPQ 303


>gi|29346615|ref|NP_810118.1| recombination factor protein RarA [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253568023|ref|ZP_04845434.1| recombination factor protein RarA [Bacteroides sp. 1_1_6]
 gi|29338511|gb|AAO76312.1| putative ATPase, AAA family [Bacteroides thetaiotaomicron VPI-5482]
 gi|251842096|gb|EES70176.1| recombination factor protein RarA [Bacteroides sp. 1_1_6]
          Length = 422

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 73/330 (22%), Positives = 123/330 (37%), Gaps = 53/330 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP+TL+++ GQ        +  +   A    +   +  GPPG+GKTTLAQ++A 
Sbjct: 3   PLAERLRPKTLDDYIGQKHLVGPGAILRKMIDA--GRISSFILWGPPGVGKTTLAQIIAN 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAM 129
           +L   F + S  V +   D+  ++   +          +LFIDEIHR S   ++ L  A+
Sbjct: 61  KLETPFYTLSA-VTSGVKDVREVIERAKSNRFFSQSSPILFIDEIHRFSKSQQDSLLGAV 119

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E+  + L+    E PS   ++  LSR  L    +        L  R              
Sbjct: 120 ENGTVTLIGATTENPSFEVIRPLLSRCQLYVLKSLEKEDLLELLQRAITTDT-------- 171

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
                    K   + + +  A  +   S G  R    +L  V + ++      IT ++  
Sbjct: 172 -------ILKERKIELKETTA--MLRFSGGDARKLLNILELVVE-SDTEETVVITDDMVT 221

Query: 248 AALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
             L +   A DK G    D+                   ISA +   R +  D    ++ 
Sbjct: 222 ERLQQNPLAYDKDGEMHYDI-------------------ISAFIKSIRGSDPDGAIYWLA 262

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +       P    R L+  A + +G+  P+
Sbjct: 263 RMVEGGEDPAFIARRLVISAAEDIGLANPN 292


>gi|254467160|ref|ZP_05080571.1| AAA ATPase, central region [Rhodobacterales bacterium Y4I]
 gi|206688068|gb|EDZ48550.1| AAA ATPase, central region [Rhodobacterales bacterium Y4I]
          Length = 440

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 76/330 (23%), Positives = 126/330 (38%), Gaps = 58/330 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP++L E  GQ +               + +L  ++F GPPG+GKTT+A+++A+
Sbjct: 23  PLADRLRPQSLGEVIGQAQVLGPEAPL--GVMLASGSLSSLIFWGPPGVGKTTIARLLAK 80

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
           E  ++F   S      P + K  + A +        +LF+DEIHR +   ++   P MED
Sbjct: 81  ETDLHFVQISAIFTGVPELRKVFEAARIRRQNGQGTLLFVDEIHRFNKAQQDGFLPHMED 140

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             + L+    E PS       LSR  ++                           + DL+
Sbjct: 141 GTILLVGATTENPSFELNAAVLSRSQVLVL---------------------ERLSLADLE 179

Query: 190 TIVQRGAKLTG--LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            + QR  K  G  L ++ +A   +   + G  R    L+ +V   A       + RE   
Sbjct: 180 RLTQRAEKELGRALPLSGDARDALHEMADGDGRALLNLIEQV---AAWKVEAPLGREALS 236

Query: 248 AALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
             L+R A   DK G +  +L                   ISA     R +  D    ++ 
Sbjct: 237 NRLMRRAAKFDKSGDEHYNL-------------------ISALHKSIRGSDPDAALYWLA 277

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +       PR   R L  ++ + +G+  P 
Sbjct: 278 RMLEGGEDPRFLARRLTMMSTEDIGMADPQ 307


>gi|218291271|ref|ZP_03495247.1| AAA ATPase central domain protein [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218238819|gb|EED06031.1| AAA ATPase central domain protein [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 447

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 80/348 (22%), Positives = 132/348 (37%), Gaps = 53/348 (15%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD   L S + ++ +A ++  +RPR+L+E  G         +     +   + L  ++  
Sbjct: 1   MDLFSLASEHEAEREAPLAYRMRPRSLDEMVGHENLVGRDGILRRMIER--DRLMSIILY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDE 113
           GPPG GKTT+A+V+AR+    F   +  V +   D+   +            R V+F+DE
Sbjct: 59  GPPGTGKTTIAEVIARQTKARFIPLNA-VTSGIADVRKAVETAREERDLYGRRTVVFLDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++ L P +E   + L+    E P        LSR       + V  L     
Sbjct: 118 IHRFNKNQQDALLPHVEAGLISLVGATTENPYFDVNAALLSR-------SHVFRLEPLSP 170

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
           D  G  + +   + E       RG     + +  +A   + +++RG  R A  LL     
Sbjct: 171 DDIGRLVDMAIADEE-------RGLGRMRVRLHPDARRVLTLQARGDARRALNLLELAAF 223

Query: 232 FAEVAHAKTITR--EIADAALLRLA---IDKMGFDQLDLRYLTMIARNFGGGPVGIETIS 286
            A V             DAAL        D+ G D  D                   TIS
Sbjct: 224 AARVGPDGETEIGVPEVDAALEATGGPRYDRAGDDHYD-------------------TIS 264

Query: 287 AGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           A +   R +  +    ++ +       P    R LM +A + +G+  P
Sbjct: 265 AFIKSVRGSDVNAAMLWLAKMLEGGEDPAFIARRLMILAAEDVGMADP 312


>gi|16803554|ref|NP_465039.1| recombination factor protein RarA [Listeria monocytogenes EGD-e]
 gi|16410943|emb|CAC99592.1| lmo1514 [Listeria monocytogenes EGD-e]
          Length = 425

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 71/322 (22%), Positives = 131/322 (40%), Gaps = 37/322 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+ L+E  GQ       K+     KA+   L  ++  GPPG+GKT++A  +A 
Sbjct: 5   PLAYRMRPKALDEIVGQTHLVGKDKIINRMVKAKQ--LSSMILYGPPGIGKTSIASAIAG 62

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR+ +     K   ++ A    +    +L +DE+HRL    ++ L P +E   + 
Sbjct: 63  STKYAFRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQDFLLPLLESGAI- 121

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           +++G   S   + IN +    I + T++  L     +   I        ++   +  +RG
Sbjct: 122 ILIGATTSNPYIAINPA----IRSRTQIFELKPLTIEDIMI-------TMDRALSDKERG 170

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT--ITREIADAALLRL 253
                + + + A    A  S G  R A   L      +E        IT ++A+  L + 
Sbjct: 171 LGNYDVEIDEVAKKHFATASNGDVRSALNALELAVISSEPNEDGVIHITLDVAEECLQKK 230

Query: 254 --AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
             A DK G    D+  L+   ++  G  V              A+  +    +I+ G + 
Sbjct: 231 SLAHDKDGDAHYDV--LSAFQKSVRGSDV------------NAALHYMGR--LIEAGDLV 274

Query: 312 RTPRGRLLMPIAWQHLGIDIPH 333
              R R+L+ +A++ +G+  P 
Sbjct: 275 SISR-RMLV-MAYEDIGLASPQ 294


>gi|293396838|ref|ZP_06641112.1| replication-associated recombination protein A [Serratia odorifera
           DSM 4582]
 gi|291420309|gb|EFE93564.1| replication-associated recombination protein A [Serratia odorifera
           DSM 4582]
          Length = 428

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 72/321 (22%), Positives = 113/321 (35%), Gaps = 40/321 (12%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP TL ++ GQ    +  K    A +A    L  ++  GPPG GKTTLA+++ R    +
Sbjct: 1   MRPTTLAQYIGQQHLLAPGKPLPRAIEAGQ--LHSMILWGPPGTGKTTLAELIGRYGQAD 58

Query: 82  FRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
               S        I +A + A    +   R +LF+DE+HR +   ++   P +ED  +  
Sbjct: 59  VERISAVTSGIKEIREAIERARQNRDAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 118

Query: 137 M--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           +    E PS       LSR  +           + + D                     R
Sbjct: 119 IGATTENPSFELNSALLSRARVYLLKALTADDISQVLD--------------QAMNDSSR 164

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
           G     + + +E    ++    G  R A   L  + D AEV            AALL+  
Sbjct: 165 GFGGQNIVLPEETRRMLSELVGGDARRALNSLEMMADMAEVDDRGQRVL---TAALLKEV 221

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
             +              AR    G    + ISA     R +  D    +  +       P
Sbjct: 222 SGERS------------ARFDNKGDRYYDLISALHKSVRGSAPDAALYWYARIITAGGDP 269

Query: 315 R--GRLLMPIAWQHLGIDIPH 333
               R L+ IA + +G   P 
Sbjct: 270 LYVARRLLAIASEDVGNADPR 290


>gi|224501546|ref|ZP_03669853.1| recombination factor protein RarA [Listeria monocytogenes FSL
           R2-561]
          Length = 425

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 71/322 (22%), Positives = 131/322 (40%), Gaps = 37/322 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+ L+E  GQ       K+     KA+   L  ++  GPPG+GKT++A  +A 
Sbjct: 5   PLAYRMRPKALDEIVGQTHLVGKDKIINRMVKAKQ--LSSMILYGPPGIGKTSIASAIAG 62

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR+ +     K   ++ A    +    +L +DE+HRL    ++ L P +E   + 
Sbjct: 63  STKYAFRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQDFLLPLLESGAI- 121

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           +++G   S   + IN +    I + T++  L     +   I        ++   +  +RG
Sbjct: 122 ILIGATTSNPYIAINPA----IRSRTQIFELKPLTIEDIMI-------TMDRALSDKERG 170

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT--ITREIADAALLRL 253
                + + + A    A  S G  R A   L      +E        IT ++A+  L + 
Sbjct: 171 LGNYDVEIDEVAKKHFATASNGDVRSALNALELAVISSEPNEDGVIHITLDVAEECLQKK 230

Query: 254 --AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
             A DK G    D+  L+   ++  G  V              A+  +    +I+ G + 
Sbjct: 231 SLAHDKDGDAHYDV--LSAFQKSVRGSDV------------NAALHYMGR--LIEAGDLV 274

Query: 312 RTPRGRLLMPIAWQHLGIDIPH 333
              R R+L+ +A++ +G+  P 
Sbjct: 275 SISR-RMLV-MAYEDIGLASPQ 294


>gi|300722522|ref|YP_003711812.1| putative polynucleotide enzyme with nucleotide triphosphate
           hydrolase domain [Xenorhabdus nematophila ATCC 19061]
 gi|297629029|emb|CBJ89614.1| putative polynucleotide enzyme with nucleotide triphosphate
           hydrolase domain [Xenorhabdus nematophila ATCC 19061]
          Length = 447

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 73/337 (21%), Positives = 120/337 (35%), Gaps = 42/337 (12%)

Query: 8   LSRNVSQED--ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            S + SQ +     + +RP TL+ + GQ    +  K    A +A    L  ++  GPPG 
Sbjct: 4   FSLDFSQNEFQPLAARMRPVTLDNYIGQSHLLAEGKPLSRAIRAGH--LHSMILWGPPGT 61

Query: 66  GKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GKTTLA+++      +    S        I ++ + A    N   R +LF+DE+HR +  
Sbjct: 62  GKTTLAEIMGYYAQADIERISAVTSGIKEIRESIEKARQNRNAGRRTILFVDEVHRFNKS 121

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++   P +ED  +  +    E PS       LSR  +        LL+    ++  I  
Sbjct: 122 QQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLK----LLSTAEIEQVLIQA 177

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
                         +RG     + + D+    IA  + G  R +  LL  + D AEV   
Sbjct: 178 M----------NDKERGIGGQNIILPDDTRQMIAELAAGDARRSLNLLEMMSDMAEVNQQ 227

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
                       +         ++ D  Y               + ISA     R +  D
Sbjct: 228 GQRILTPQLLTEVSGERSARFDNKGDRYY---------------DFISALHKSIRGSAPD 272

Query: 299 LIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
               +  +       P    R L+ IA + +G   P 
Sbjct: 273 AALYWYARIITAGGDPLYIARRLLAIASEDVGNADPR 309


>gi|139436949|ref|ZP_01771109.1| Hypothetical protein COLAER_00082 [Collinsella aerofaciens ATCC
           25986]
 gi|133776596|gb|EBA40416.1| Hypothetical protein COLAER_00082 [Collinsella aerofaciens ATCC
           25986]
          Length = 454

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 76/350 (21%), Positives = 129/350 (36%), Gaps = 46/350 (13%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M D     +R  S ++A ++  +RP +L+E+ GQ +A         A +   + L  V+ 
Sbjct: 6   MDDLFSASTRERSFKNAPLAVRMRPNSLDEYVGQQKAVGKGSWLRAAIE--HDVLSSVIL 63

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFID 112
            GP G GKTTLA ++A      F   S  V     DL  ++   +        R +LFID
Sbjct: 64  YGPAGTGKTTLAHIIANHTKSEFVEVSA-VTGTVKDLRRVIDEAKTRLNTYDRRTILFID 122

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           EIHR S   ++ L  A+E+  + ++    E P        LSR                 
Sbjct: 123 EIHRFSKSQQDALLHAVENRTVIMIGATTENPYFEVNSALLSR----------------- 165

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKL-----TGLAVTDEAACEIAMRSRGTPRIAGRL 225
               G  + L   + ED+ T+++R  +         +  ++ A  I   + G  R A   
Sbjct: 166 ----GRVVELEHLKDEDIATLIERALEAPQGLNGKFSADEDTAKTICTLAAGDARSALTT 221

Query: 226 LRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETI 285
           L    + A        T   A      + +D +        +          G +  + I
Sbjct: 222 LELASEIAVTRPDTEGTPAPAAGERYPITVDDVKIANPRRGF-----TYDKNGDMHYDII 276

Query: 286 SAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           SA +   R +  D    ++ +       P+   R +M  A + +G   P 
Sbjct: 277 SAFIKSMRGSDPDATVYWLARMIDAGEDPKFIARRIMIHASEDVGNADPQ 326


>gi|254828252|ref|ZP_05232939.1| recombination factor protein RarA [Listeria monocytogenes FSL
           N3-165]
 gi|258600640|gb|EEW13965.1| recombination factor protein RarA [Listeria monocytogenes FSL
           N3-165]
          Length = 427

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 71/322 (22%), Positives = 131/322 (40%), Gaps = 37/322 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+ L+E  GQ       K+     KA+   L  ++  GPPG+GKT++A  +A 
Sbjct: 5   PLAYRMRPKALDEIVGQTHLVGKDKIINRMVKAKQ--LSSMILYGPPGIGKTSIASAIAG 62

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR+ +     K   ++ A    +    +L +DE+HRL    ++ L P +E   + 
Sbjct: 63  STKYAFRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQDFLLPLLESGAI- 121

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           +++G   S   + IN +    I + T++  L     +   I        ++   +  +RG
Sbjct: 122 ILIGATTSNPYIAINPA----IRSRTQIFELKPLTIEDIMI-------TMDRALSDKERG 170

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT--ITREIADAALLRL 253
                + + + A    A  S G  R A   L      +E        IT ++A+  L + 
Sbjct: 171 LGNYDVEIDEVAKKHFATASNGDVRSALNALELAVISSEPNEDGVIHITLDVAEECLQKK 230

Query: 254 --AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
             A DK G    D+  L+   ++  G  V              A+  +    +I+ G + 
Sbjct: 231 SLAHDKDGDAHYDV--LSAFQKSVRGSDV------------NAALHYMGR--LIEAGDLV 274

Query: 312 RTPRGRLLMPIAWQHLGIDIPH 333
              R R+L+ +A++ +G+  P 
Sbjct: 275 SISR-RMLV-MAYEDIGLASPQ 294


>gi|126736633|ref|ZP_01752373.1| ATPase, AAA family protein [Roseobacter sp. CCS2]
 gi|126713946|gb|EBA10817.1| ATPase, AAA family protein [Roseobacter sp. CCS2]
          Length = 436

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 74/338 (21%), Positives = 124/338 (36%), Gaps = 58/338 (17%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           +   +        LRP+ L E  GQ +               + +L  ++F GPPG+GKT
Sbjct: 10  TDTPAGPRPLADRLRPKALSEVIGQQQVLGADAPL--GTMLSSGSLSSLIFWGPPGVGKT 67

Query: 69  TLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           T+A+++A E  ++F   S      P + K  + A +        +LF+DEIHR +   ++
Sbjct: 68  TIARLLADETDLHFVQISAIFTGVPDLRKVFEAAKMRRQNGKGTLLFVDEIHRFNKAQQD 127

Query: 124 ILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
              P MED  + L+    E PS       LSR  +   T                     
Sbjct: 128 GFLPYMEDGTILLVGATTENPSFELNAAVLSRSQVFILTR-------------------- 167

Query: 182 FYEIEDLKTIVQRGAKLTG--LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
             +++DL+ + QR  K  G  L +   A   +   + G  R    LL  +   +      
Sbjct: 168 -LDLKDLELLAQRAEKELGKALPLDGPARDALLEMADGDGR---ALLNLIEQISAWKTDG 223

Query: 240 TITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
            +T +     L++ A   DK G +  +L                   ISA     R +  
Sbjct: 224 RLTTDDLTKRLMKRAVKYDKSGDEHYNL-------------------ISALHKSVRGSDP 264

Query: 298 DLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           D    +  +       PR   R +  +A + +G+  P 
Sbjct: 265 DAALYWFARMLAGGEDPRFLARRITRMAVEDIGLADPQ 302


>gi|153806769|ref|ZP_01959437.1| hypothetical protein BACCAC_01041 [Bacteroides caccae ATCC 43185]
 gi|149131446|gb|EDM22652.1| hypothetical protein BACCAC_01041 [Bacteroides caccae ATCC 43185]
          Length = 423

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 74/330 (22%), Positives = 125/330 (37%), Gaps = 53/330 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP+TL+E+ GQ        +  +   A    +   +  GPPG+GKTTLAQ++A 
Sbjct: 3   PLAERLRPKTLDEYIGQKHLVGPGAILRKMIDA--GRISSFILWGPPGVGKTTLAQIIAN 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAM 129
           +L   F + S  V +   D+  ++   +          +LFIDEIHR S   ++ L  A+
Sbjct: 61  KLETPFYTLSA-VTSGVKDVREVIDRAKSNRFFSQSSPILFIDEIHRFSKSQQDSLLGAV 119

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E+  + L+    E PS   ++  LSR  L    +        L +R      +       
Sbjct: 120 ENGTVTLIGATTENPSFEVIRPLLSRCQLYVLKSLEKEDLLELLERAISTDTV------- 172

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
                    K   + + +  A  +   S G  R    +L  V + ++      IT ++  
Sbjct: 173 --------LKERKIELKETTA--MLRFSGGDARKLLNILELVVE-SDTDDTVVITDDMVT 221

Query: 248 AALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
             L +   A DK G    D+                   ISA +   R +  D    ++ 
Sbjct: 222 ERLQQNPLAYDKDGEMHYDI-------------------ISAFIKSIRGSDPDGAIYWLA 262

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +       P    R L+  A + +G+  P+
Sbjct: 263 RMVEGGEDPAFIARRLVISAAEDIGLANPN 292


>gi|313677223|ref|YP_004055219.1| ATPase AAA [Marivirga tractuosa DSM 4126]
 gi|312943921|gb|ADR23111.1| AAA ATPase central domain protein [Marivirga tractuosa DSM 4126]
          Length = 425

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 72/330 (21%), Positives = 125/330 (37%), Gaps = 47/330 (14%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
             ++      +RP  LEE  GQ        V           +  ++F GPPG+GKTT+A
Sbjct: 3   FGEDKPLAERMRPTKLEELVGQQHLVGEKGVLR--LTIAQGKVPSMIFWGPPGVGKTTIA 60

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAM 129
            ++A ++   F++ S  + A   D+  ++       + +LFIDEIHR +   ++ L  A+
Sbjct: 61  NIIANQVKAPFQTLSA-ISAGVKDVREVIQRASRSGKIILFIDEIHRFNKSQQDALLGAV 119

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E   + L+    E PS       LSR  +             L+D  G+           
Sbjct: 120 EKGVITLIGATTENPSFEVNSALLSRCQVYTLKALE------LEDLKGL----------- 162

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD-FAEVAHAKTITREIA 246
           L T ++   KL  L +  +    +   S G  R    L   V D + +    K    ++ 
Sbjct: 163 LNTALENDEKLKELNIEIKEYEALIQLSGGDARKLLNLFELVIDAYGKDEKIKITNDQVK 222

Query: 247 DAALLRLA-IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           + A  R+A  DK G    D+                   ISA +   R +  +    ++ 
Sbjct: 223 EIAQNRMAIYDKSGEQHYDI-------------------ISAFIKSIRGSDPNAALYWLA 263

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +        +   R L+  A + +G+  P+
Sbjct: 264 RMIEGGEDVKFIARRLLISASEDIGLANPN 293


>gi|254420530|ref|ZP_05034254.1| ATPase, AAA family protein [Brevundimonas sp. BAL3]
 gi|196186707|gb|EDX81683.1| ATPase, AAA family protein [Brevundimonas sp. BAL3]
          Length = 442

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 74/343 (21%), Positives = 121/343 (35%), Gaps = 55/343 (16%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D     S  +  +      LRPRTL+E  GQ              +A    L  ++  
Sbjct: 1   MTDLFE-ASGILPPDAPLADRLRPRTLDEVVGQDHLLGPGGPIRRMIEA--GRLGSMILW 57

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIH 115
           GPPG GKTT+A+++A+  G  ++S S        + KA + A +        +LF+DEIH
Sbjct: 58  GPPGTGKTTIARLLAQAAGYEYQSISAVFSGVADLKKAFEAARMRRAAGQSTLLFVDEIH 117

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P +E   + L+    E PS       LSR  +           + L  R
Sbjct: 118 RFNRAQQDGFLPFVEAGVVTLVGATTENPSFELNGALLSRSQVYVLKRLDDAALDQLLSR 177

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                          +  ++RG  L+  A     A      + G  R    +   + D  
Sbjct: 178 --------------AEAHMERGLPLSPEARQAMLAL-----ADGDGRYLLTMSEVLFDLP 218

Query: 234 EVAHAKTITREIADAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
           E    + +  +   A L R   A DK   +  +L                   ISA    
Sbjct: 219 E---GEMLDVQGLAAVLQRRAPAYDKSREEHYNL-------------------ISALHKS 256

Query: 292 PRDAIEDLIEPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIP 332
            R +  D    ++ +       P    R ++ +A + +G   P
Sbjct: 257 VRGSDPDAALYWLARMLNGGEDPLYLARRIVRMAVEDIGEADP 299


>gi|115525555|ref|YP_782466.1| recombination factor protein RarA [Rhodopseudomonas palustris
           BisA53]
 gi|115519502|gb|ABJ07486.1| Recombination protein MgsA [Rhodopseudomonas palustris BisA53]
          Length = 442

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 69/324 (21%), Positives = 110/324 (33%), Gaps = 53/324 (16%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            LRPR L +  GQ              + R+  L  ++F GPPG GKTT+A+++A    +
Sbjct: 29  RLRPRALSDVVGQDHILGPDGALTRMLETRS--LGSLVFWGPPGTGKTTVARLLADATEL 86

Query: 81  NFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           +F   S        + K  D A     +    +LF+DE+HR +   ++   P MED  + 
Sbjct: 87  HFEQISAVFSGVADLKKVFDAARARREMGRGTLLFVDEVHRFNKAQQDSFLPVMEDGTVV 146

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           L+    E PS       LSR  ++  ++        L +                     
Sbjct: 147 LVGATTENPSFELNAALLSRARVLVFSSLDPAAIEKLYEN-------------------A 187

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
              +   L +  EA   +   + G  R A  L   V   A     +          L R 
Sbjct: 188 EAVEGKKLPLDAEARAVLVRMADGDGRAALTLAEEVWRAA--RKGEVFDAAQLQDILQRR 245

Query: 254 A--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
           A   DK      +L                   ISA     R +  D    Y+ +     
Sbjct: 246 APIYDKSADGHYNL-------------------ISALHKSVRGSDPDAALYYLCRMFDAG 286

Query: 312 RTP--RGRLLMPIAWQHLGIDIPH 333
             P    R ++ +A + +G+  P 
Sbjct: 287 EDPLFLARRVVRMAVEDIGLADPQ 310


>gi|229013617|ref|ZP_04170748.1| hypothetical protein bmyco0001_40250 [Bacillus mycoides DSM 2048]
 gi|228747676|gb|EEL97548.1| hypothetical protein bmyco0001_40250 [Bacillus mycoides DSM 2048]
          Length = 428

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 78/327 (23%), Positives = 125/327 (38%), Gaps = 43/327 (13%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           +      +RP  ++E  GQ       K+     +A       ++  GPPG GKT++A  +
Sbjct: 2   KQPLAHRMRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           A   G  FR  +  V     D+  ++   +     VL +DE+HRL    ++ L P +E  
Sbjct: 60  AGSTGTLFRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESG 118

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
            L L+      P         SR        ++  L    +D   I ++    + E    
Sbjct: 119 LLTLIGATTSNPFHAINSAIRSRC-------QIFELHALTEDDILIGLKRALEDKE---- 167

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR--DFAEVAHAKTITREIADA 248
              +G     + VTDEA    A  S G  R A   L       F     A  IT EIA+ 
Sbjct: 168 ---KGLGEYDVTVTDEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEE 224

Query: 249 ALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
            L + +   DK G    D+  L+   ++  G  V              A+  L    +I+
Sbjct: 225 CLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDV------------NAALHYLAR--LIE 268

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            G +Q    GR L+ +A++ +G+  P 
Sbjct: 269 AGDLQSI--GRRLLIMAYEDIGLASPQ 293


>gi|89070526|ref|ZP_01157815.1| ATPase, AAA family protein [Oceanicola granulosus HTCC2516]
 gi|89043833|gb|EAR50031.1| ATPase, AAA family protein [Oceanicola granulosus HTCC2516]
          Length = 441

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 71/330 (21%), Positives = 114/330 (34%), Gaps = 58/330 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP+ L +  GQ +               + +L  ++F GPPG+GKTT+A+++A 
Sbjct: 23  PLADRLRPQRLADVVGQEQVLGPEAPLTTM--LASGSLSSLVFWGPPGVGKTTIARLLAA 80

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
           E  ++F   S        + K  + A L        +LF+DEIHR +   ++   P MED
Sbjct: 81  ETDLHFVQISAIFTGVQELRKVFEAARLRRQAGQGTLLFVDEIHRFNKAQQDGFLPHMED 140

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             + L+    E PS       LSR  ++                           +  L+
Sbjct: 141 GTILLVGATTENPSFELNAALLSRAQVLVL---------------------ERLPLARLE 179

Query: 190 TIVQRGAKLT--GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            + QR        L +   A   +   + G  R    LL  V   A       + +    
Sbjct: 180 LLAQRAEAELGRPLPLDGPAREALLEMADGDGR---ALLNLVEQVAGWRTDAPLDKTALA 236

Query: 248 AALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
             L R A   DK G +  +L                   ISA     R +  D    +  
Sbjct: 237 TRLTRRAAQYDKSGEEHYNL-------------------ISALHKSVRGSDPDAALYWFT 277

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +       PR   R +  +A + +G+  P 
Sbjct: 278 RMLAGGEDPRFLARRITRMAVEDIGLADPQ 307


>gi|281355193|ref|ZP_06241687.1| AAA ATPase central domain protein [Victivallis vadensis ATCC
           BAA-548]
 gi|281318073|gb|EFB02093.1| AAA ATPase central domain protein [Victivallis vadensis ATCC
           BAA-548]
          Length = 438

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 77/343 (22%), Positives = 120/343 (34%), Gaps = 55/343 (16%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M+ E L S  V +  AD   +RP +L+E  GQ                 +  L   +  G
Sbjct: 1   MEEETLFSAGVGRPLAD--RMRPASLDEIVGQDHLLGPDAPLRRMI--DSGRLASFILWG 56

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHR 116
           PPG GKTTLA+++A    ++F + S        + KA ++A    +  +  +LFIDEIHR
Sbjct: 57  PPGCGKTTLARIMATRTSLHFVALSAVFSGIADLRKAFEVAGKRRSCGEGTLLFIDEIHR 116

Query: 117 LSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRF 174
            +   ++   P +E+  + L+    E PS       LSR  +         + NPL    
Sbjct: 117 FNRAQQDGFLPYVENGTVILVGATTENPSFELNSALLSRCKV--------FVMNPL---- 164

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLT--GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
                      E L  IV+R  ++    L V++E    +   + G  R    LL  V D 
Sbjct: 165 ---------NAEALAEIVRRAERILDRPLPVSEEGRKTLIELADGDGRYLINLLESVFDL 215

Query: 233 AEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEP 292
                       +          DK      +L                   ISA     
Sbjct: 216 TPAGRTLDAAGVLKIVQQRAPVYDKDREGHYNL-------------------ISALHKSL 256

Query: 293 RDAIEDLIEPYMIQQGFIQRTPRG--RLLMPIAWQHLGIDIPH 333
           R +  D    +  +       P    R L   A + + +  P 
Sbjct: 257 RGSDTDAALYWAARMLAGGEDPLFLLRRLTRFAMEDVSLADPQ 299


>gi|295098785|emb|CBK87874.1| Recombination protein MgsA [Eubacterium cylindroides T2-87]
          Length = 445

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 67/345 (19%), Positives = 127/345 (36%), Gaps = 55/345 (15%)

Query: 2   MDREGLLSRNVSQED--ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M+++ L      +ED       +RP TLEE+ GQ +     K+  +  +   + +  ++F
Sbjct: 1   MEQDSLFQ---IKEDIRPLADRMRPETLEEYVGQHQLVEKGKLLWQMIE--NDQVTSMIF 55

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFIDE 113
            GPPG+GKTTLA+++A +   ++      V +   ++  ++        L  + +LF+DE
Sbjct: 56  WGPPGVGKTTLARIIAHQTE-SYFVDFSAVTSGIKEIKEVMKQADQRKVLGQKTILFVDE 114

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++   P +E   + L+    E PS       LSR  +             L 
Sbjct: 115 IHRFNKAQQDAFLPYVEKGSIILIGATTENPSFEINSALLSRCRVFVLNALEQKDLEDLI 174

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R                    +G     + ++ E    IA  S G  R     L  V  
Sbjct: 175 FRAISSS---------------KGLGNLRIDISQEDIEAIAAFSGGDARFCLNTLEMVVY 219

Query: 232 FAEVAHAKT-ITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAG 288
            +        +++EI    L + +   DK G +  ++                   ISA 
Sbjct: 220 NSPSDVNGIHVSKEILKQCLQKRSLLYDKKGEEHYNI-------------------ISAL 260

Query: 289 LSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
               R++       ++ +       P    R ++  + + +G+  
Sbjct: 261 HKSMRNSDVQASIYWLARMLEAGEDPLYVARRIVRFSSEDIGMAD 305


>gi|299822828|ref|ZP_07054714.1| ATPase [Listeria grayi DSM 20601]
 gi|299816357|gb|EFI83595.1| ATPase [Listeria grayi DSM 20601]
          Length = 424

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 73/318 (22%), Positives = 129/318 (40%), Gaps = 37/318 (11%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            +RP++L+E  GQ       K+     KA+   L  ++  GPPG+GKT++A  +A     
Sbjct: 9   RMRPKSLDEIVGQTHLVGEGKIINRMVKAKQ--LSSMILYGPPGIGKTSIASAIAGSTKY 66

Query: 81  NFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
            FR+ +     K   ++ A    +    +L +DE+HRL    ++ L P +E   + +++G
Sbjct: 67  AFRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQDFLLPHLESGAI-ILIG 125

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199
              S   + IN +    I + T++  L         + I      I+      + G    
Sbjct: 126 ATTSNPYIAINPA----IRSRTQIFELKP-------LTIEDIEKTIDRALADTENGLGDY 174

Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT--REIADAALLRL--AI 255
            + +  EA    A  S G  R A   L      +E      I    E+A+  L R   A 
Sbjct: 175 QVELAPEAREHFATASNGDVRSALNALELAVVSSETNEKGVIHVSLEVAEECLQRKSLAH 234

Query: 256 DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR 315
           DK G    D+  L+   ++  G  V              A+  +    +I+ G +    R
Sbjct: 235 DKDGDAHYDV--LSAFQKSVRGSDV------------NAALHYMGR--LIEAGDLISISR 278

Query: 316 GRLLMPIAWQHLGIDIPH 333
            R+L+ +A++ +G+  P 
Sbjct: 279 -RMLV-MAYEDIGLANPQ 294


>gi|294675887|ref|YP_003576502.1| ATPase AAA [Rhodobacter capsulatus SB 1003]
 gi|294474707|gb|ADE84095.1| ATPase, AAA family [Rhodobacter capsulatus SB 1003]
          Length = 435

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 80/345 (23%), Positives = 126/345 (36%), Gaps = 55/345 (15%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M D     +   ++    ++  +RP+ L E  GQ             A   A +L  V+ 
Sbjct: 1   MPDLFDTSAPKGAEAPRPLADRIRPQHLSEVIGQTHVLGPEGPL--GAMLAAGSLGSVIL 58

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEI 114
            GPPG+GKTT+A+++A E    F   S      P + K  D A L        +LF+DEI
Sbjct: 59  WGPPGVGKTTIARLLAHESDRAFVQISAIFSGVPELRKVFDAAKLRMGQGRGTLLFVDEI 118

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++   P MED  + L+    E PS       LSR  +I               
Sbjct: 119 HRFNKAQQDSFLPHMEDGTILLVGATTENPSFELNAALLSRAQVI--------------- 163

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
              +  RL+  ++E L    ++      L +   A   +   + G  R A  L+ +V  +
Sbjct: 164 ---VLERLSLADLERLAQRAEQAMG-RALPLKAPAREALLEMADGDGRAALNLIEQVMAW 219

Query: 233 AEVAHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
              A    +  E   + L+R A   DK G    +L                   ISA   
Sbjct: 220 KLPA---PLDTEALASRLMRRAANYDKSGDGHYNL-------------------ISALHK 257

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
             R +  D    +  +       PR   R L  +A + + +  P 
Sbjct: 258 SVRGSDPDAALYWYCRMLEGGEDPRFIARRLTRMAVEDIALADPQ 302


>gi|15889208|ref|NP_354889.1| recombination factor protein RarA [Agrobacterium tumefaciens str.
           C58]
 gi|15157031|gb|AAK87674.1| ATPase, AAA family protein [Agrobacterium tumefaciens str. C58]
          Length = 438

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 77/333 (23%), Positives = 119/333 (35%), Gaps = 51/333 (15%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
            V+        LRP+TL E +GQ        V        + +L  ++F GPPG GKTT+
Sbjct: 13  EVANRRPLADRLRPKTLSEVSGQPHLTGEEGVLRRMI--DSGSLGSMIFWGPPGTGKTTV 70

Query: 71  AQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           A++++ E G+ F   S        + K  + A        + +LF+DEIHR +   ++  
Sbjct: 71  ARLLSGEAGLAFEQISAIFSGVADLKKVFEAARTRRMNGRQTLLFVDEIHRFNRAQQDSF 130

Query: 126 YPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
            P MED  + L+    E PS       LSR                        +    +
Sbjct: 131 LPVMEDGTIILVGATTENPSFELNAALLSR---------------------ARVLTFGSH 169

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           + + L  +++R               E A  S    R+A    R V   AE         
Sbjct: 170 DEDSLSELLKRA---EEAEGKPLPLTEEARASLL--RMADGDGRAVLTLAE--------- 215

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVG-IETISAGLSEPRDAIEDLIEP 302
           E+  AA      D  G      R +   A  +     G    ISA     R +  D    
Sbjct: 216 EVWRAARKDETFDTEGLT----RIVQRRAPVYDKSQDGHYNLISALHKSVRGSDPDAALY 271

Query: 303 YMIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
           Y+ +       P   GR L+ +A + +G+  P 
Sbjct: 272 YLARMFDAGEDPLYLGRRLVRMAVEDIGLADPQ 304


>gi|260663310|ref|ZP_05864201.1| ATPase [Lactobacillus fermentum 28-3-CHN]
 gi|260552162|gb|EEX25214.1| ATPase [Lactobacillus fermentum 28-3-CHN]
          Length = 430

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 72/324 (22%), Positives = 118/324 (36%), Gaps = 41/324 (12%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +     +RPRTL+E  GQ       K+     +AR   L  ++  GPPG GKT++A  +A
Sbjct: 3   EPLAFRMRPRTLDEVVGQQHLIGPGKIIWRMVEAR--MLSSMILYGPPGTGKTSIASAIA 60

Query: 76  RELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
                 FR+ +    +K    + A    +    +L +DEIHRL    ++ L P +E  ++
Sbjct: 61  GSTKYAFRTLNAATDSKKDLQVVAEEAKMSGTVILLLDEIHRLDKAKQDFLLPHLESGRI 120

Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            L+    E P         SR  +               DR                   
Sbjct: 121 VLIGATTENPYIAINPAIRSRAQIFEVKPLTAAEVGLAIDR--------------ALKDP 166

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI--TREIADAAL 250
           QRG     L + D+A  ++   + G  R A   L       E A    I  T  + + ++
Sbjct: 167 QRGLGKLPLVLDDDARTQLITATNGDLRSALNGLELAARSTEPASDGQIHLTLSVIEESV 226

Query: 251 LRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            + ++  DK G    D      +   F     G +T +A                +I  G
Sbjct: 227 QKRSLVADKDGDGHYD------VISAFQKSIRGSDTDAALH----------YLAQLIAAG 270

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIP 332
            +      R L+ IA++ +G+  P
Sbjct: 271 DLVSI--ARRLVVIAYEDIGLANP 292


>gi|229062094|ref|ZP_04199419.1| hypothetical protein bcere0026_41660 [Bacillus cereus AH603]
 gi|228717246|gb|EEL68921.1| hypothetical protein bcere0026_41660 [Bacillus cereus AH603]
          Length = 428

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 78/327 (23%), Positives = 125/327 (38%), Gaps = 43/327 (13%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           +      +RP  ++E  GQ       K+     +A       ++  GPPG GKT++A  +
Sbjct: 2   KQPLAHRMRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           A   G  FR  +  V     D+  ++   +     VL +DE+HRL    ++ L P +E  
Sbjct: 60  AGSTGTLFRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESG 118

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
            L L+      P         SR        ++  L    +D   I ++    + E    
Sbjct: 119 LLTLIGATTSNPFHAINSAIRSRC-------QIFELHALTEDDILIGLKRALEDKE---- 167

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR--DFAEVAHAKTITREIADA 248
              +G     + VTDEA    A  S G  R A   L       F     A  IT EIA+ 
Sbjct: 168 ---KGLGEYDVTVTDEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEE 224

Query: 249 ALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
            L + +   DK G    D+  L+   ++  G  V              A+  L    +I+
Sbjct: 225 CLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDV------------NAALHYLAR--LIE 268

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            G +Q    GR L+ +A++ +G+  P 
Sbjct: 269 AGDLQSI--GRRLLIMAYEDIGLASPQ 293


>gi|209548968|ref|YP_002280885.1| recombination factor protein RarA [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209534724|gb|ACI54659.1| AAA ATPase central domain protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 438

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 75/339 (22%), Positives = 127/339 (37%), Gaps = 57/339 (16%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           +   V+        LRP+TL + TGQ        V     +  +++L  ++F GPPG GK
Sbjct: 10  VPEEVAARRPLADRLRPKTLADVTGQEHLTGEDGVLKRMIE--SDSLGSMIFWGPPGTGK 67

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIV 121
           TT+A++++ E G+ F   S  + +   DL  +            + +LF+DEIHR +   
Sbjct: 68  TTVARLLSGEAGLAFEQISA-IFSGVADLKKMFETARLRRMDGRQTLLFVDEIHRFNRAQ 126

Query: 122 EEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           ++   P MED  + L+    E PS       LSR  ++   +                  
Sbjct: 127 QDSFLPVMEDGTVILVGATTENPSFELNAALLSRARVLTFKS------------------ 168

Query: 180 LNFYEIEDLKTIVQRGAKLT--GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
              ++ E L+ +++R   +    L +T+EA   +   + G  R    L   V   A    
Sbjct: 169 ---HDEESLEELLKRAEAIEQKPLPLTEEARLSLICMADGDGRAVLTLAEEVWRAAREGE 225

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVG-IETISAGLSEPRDAI 296
           +                 D  G      R +   A  +     G    ISA     R + 
Sbjct: 226 S----------------FDTEGLT----RIVQRRAPVYDKAQDGHYNLISALHKSVRGSD 265

Query: 297 EDLIEPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
            D    Y+ +       P   GR L+ +A + +G+  P 
Sbjct: 266 PDAALYYLARMFDAGEDPLYLGRRLVRMAVEDIGLADPQ 304


>gi|229032049|ref|ZP_04188032.1| hypothetical protein bcere0028_40940 [Bacillus cereus AH1271]
 gi|228729294|gb|EEL80288.1| hypothetical protein bcere0028_40940 [Bacillus cereus AH1271]
          Length = 428

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 77/327 (23%), Positives = 124/327 (37%), Gaps = 43/327 (13%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           +      +RP  ++E  GQ       K+     +A       ++  GPPG GKT++A  +
Sbjct: 2   KQPLAHRMRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           A   G  FR  +  V     D+  ++   +     VL +DE+HRL    ++ L P +E  
Sbjct: 60  AGSTGTPFRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESG 118

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
            L L+      P         SR        ++  L    +D   I ++    + E    
Sbjct: 119 LLTLIGATTSNPFHAINSAIRSRC-------QIFELHALTEDDLLIGLKRALEDKE---- 167

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR--DFAEVAHAKTITREIADA 248
              +G     + VT EA    A  S G  R A   L       F     A  IT EIA+ 
Sbjct: 168 ---KGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEE 224

Query: 249 ALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
            L + +   DK G    D+  L+   ++  G  V              A+  L    +I+
Sbjct: 225 CLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDV------------NAALHYLAR--LIE 268

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            G +Q    GR L+ +A++ +G+  P 
Sbjct: 269 AGDLQSI--GRRLLIMAYEDIGLASPQ 293


>gi|284047303|ref|YP_003397643.1| ATPase AAA [Conexibacter woesei DSM 14684]
 gi|283951524|gb|ADB54268.1| AAA ATPase central domain protein [Conexibacter woesei DSM 14684]
          Length = 427

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 84/326 (25%), Positives = 123/326 (37%), Gaps = 49/326 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RPRTLEE+ GQ     +      A +        ++  GPPG GKTTLA++VA 
Sbjct: 20  PLAARMRPRTLEEYVGQEHLLHDGSALRTAIEQ--GRPHSMILYGPPGAGKTTLARIVAS 77

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
                F   S      P +    + A     +  + + F+DEIHR +   ++ L PA+ED
Sbjct: 78  SADAVFEELSAVQVGRPEVRAVIERAEQRRRMGRQTIFFLDEIHRFNKAQQDALLPAVED 137

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
            +L L+    E PS       LSR  L A           L  R                
Sbjct: 138 GRLTLIGATTENPSYEVNGALLSRARLYALRELTEDHVLTLLRR---------------- 181

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            + +R   L  ++V D+A   +A RS G  R A   L    D A       +T E A+ A
Sbjct: 182 AVERRECGL--VSVDDDALELLAARSGGDARTALAALELACDTAP---ESKVTLEHAEDA 236

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           L R  +        D  Y               +TISA +   R +  D    Y+     
Sbjct: 237 LQRRILHYDR--ASDHHY---------------DTISAWIKATRGSDPDASLYYLAVMLE 279

Query: 310 IQRTPR--GRLLMPIAWQHLGIDIPH 333
               PR   R ++ +A + +G   P 
Sbjct: 280 GGEDPRFIARRMVILASEDIGNADPQ 305


>gi|225620542|ref|YP_002721799.1| Holliday junction resolvase helicase subunit-like ATPase
           [Brachyspira hyodysenteriae WA1]
 gi|225215361|gb|ACN84095.1| Holliday junction resolvase helicase subunit-like ATPase
           [Brachyspira hyodysenteriae WA1]
          Length = 431

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 71/348 (20%), Positives = 127/348 (36%), Gaps = 58/348 (16%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D       +++        +RP T+EE  GQ       K   +      + +  ++F 
Sbjct: 1   MFD----FEEDINNFKPMAERMRPLTIEEVFGQHHILDKNKTLRKMI--DNDKITSMVFF 54

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEI 114
           GPPG+GK+T+A ++A++    +   +  V++   ++   +   E       + +LFIDEI
Sbjct: 55  GPPGVGKSTVASIIAKKTKSEYIKLNA-VLSNVSEIREAIKKAEKNLENRKKTILFIDEI 113

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSR-----FTLIAATTRVGLLT 167
           HR +   ++ L PA+E+  + L+      P        LSR     F  +        + 
Sbjct: 114 HRFNKSQQDALLPAVENGSIILIGSTTLNPYFYLNNALLSRIMLFEFRNLDDNDIKEAVL 173

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             ++D                    +RG     + V DEA   I   S G  R A   L 
Sbjct: 174 KAIED--------------------KRGLGEYDVDVEDEAVNLIVRYSHGDVRKAFTYLE 213

Query: 228 RVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISA 287
                 ++  +K       +      +   + FD+ D  Y                TISA
Sbjct: 214 ASYLATQIDESKEKLTITEEIVRDVTSKQSISFDE-DEHY---------------NTISA 257

Query: 288 GLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +   R +  +    Y+ +       PR   R L  +A + +G+  P+
Sbjct: 258 FIKSVRGSDPNAAIYYLARMLESGEDPRYVARRLCILASEDIGLAEPN 305


>gi|329955240|ref|ZP_08296197.1| ATPase, AAA family [Bacteroides clarus YIT 12056]
 gi|328526239|gb|EGF53258.1| ATPase, AAA family [Bacteroides clarus YIT 12056]
          Length = 431

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 80/330 (24%), Positives = 125/330 (37%), Gaps = 53/330 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP+TL+E+ GQ        V  +   A    +   +  GPPG+GKTTLAQ++A 
Sbjct: 3   PLAERLRPKTLDEYIGQKHLVGQGAVLRKMIDA--GRISSFILWGPPGVGKTTLAQIIAN 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAM 129
           +L   F + S  V +   D+  ++   +          +LFIDEIHR S   ++ L  A+
Sbjct: 61  KLETPFYTLSA-VTSGVKDVRDVIDRAKSNRFFSQASPILFIDEIHRFSKSQQDSLLGAV 119

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E   + L+    E PS   ++  LSR  L    +        L  R              
Sbjct: 120 EQGTVTLIGATTENPSFEVIRPLLSRCQLYVLKSLEKDDLLELLRR-------------A 166

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           + T VQ   K   + + +  A  +   S G  R    +L  V   +E      IT E+  
Sbjct: 167 ITTDVQ--LKERRIELKETTA--MLRYSGGDARKLLNILDLVVQ-SEAGDPVVITDEMVT 221

Query: 248 AALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
             L +   A DK G    D+                   ISA +   R +  D    ++ 
Sbjct: 222 ERLQQNPLAYDKDGEMHYDI-------------------ISAFIKSIRGSDPDGAIYWLA 262

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +       P    R L+  A + +G+  P+
Sbjct: 263 RMVEGGEDPAFIARRLVISASEDIGLANPN 292


>gi|300023015|ref|YP_003755626.1| ATPase AAA [Hyphomicrobium denitrificans ATCC 51888]
 gi|299524836|gb|ADJ23305.1| AAA ATPase central domain protein [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 439

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 79/347 (22%), Positives = 122/347 (35%), Gaps = 58/347 (16%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M +         S        LRP+TL E  GQ              K  +  +  ++F 
Sbjct: 1   MTNLFEAAGLEKSAPRPLADRLRPKTLPEVAGQDHIVGPDGTLTRMLK--SGRVPSLIFW 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIH 115
           GPPG GKTT+A+++A E  +NF   S        + KA + A ++       +LFIDEIH
Sbjct: 59  GPPGSGKTTIARLLANETNLNFEQLSAIFSGVADLRKAFERAKIMREQGKGTLLFIDEIH 118

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P MED  + L+    E PS       LSR +++                
Sbjct: 119 RFNRSQQDSFLPYMEDGTITLVGATTENPSFELNAAVLSRASVLVL-------------- 164

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKL--TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
                  N  +   L+T++QR        L +  +A   +   + G  R    L   V  
Sbjct: 165 -------NRLDDATLETLLQRAEADVGRPLPLDADAREALKGMADGDGRAILNLAEDV-- 215

Query: 232 FAEVAHAKTITREIADAALLRLA---IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAG 288
           FA VA +       A   L++      DK      +L                   ISA 
Sbjct: 216 FAAVAPSGKALTRDALVKLVQRRAPLYDKSREGHYNL-------------------ISAL 256

Query: 289 LSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
               R +  D    Y  +            R L+ +A + +G+  P 
Sbjct: 257 HKAVRGSDPDAALYYFCRMLDGGEDRLFVARRLVRMAVEDIGLADPQ 303


>gi|167752814|ref|ZP_02424941.1| hypothetical protein ALIPUT_01075 [Alistipes putredinis DSM 17216]
 gi|167659883|gb|EDS04013.1| hypothetical protein ALIPUT_01075 [Alistipes putredinis DSM 17216]
          Length = 423

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 77/331 (23%), Positives = 120/331 (36%), Gaps = 56/331 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRPRTL+E+ GQ        VF +  +     +   +  GPPG+GKTTLA++VA 
Sbjct: 4   PLAERLRPRTLDEYIGQAHLVGQNGVFRKFLETGN--VPSFILWGPPGVGKTTLAKIVAT 61

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAM 129
            L   F + S  V +   ++  +L +   +        +LFIDEIHR +   ++ L  A+
Sbjct: 62  TLKRPFYTLSA-VTSGVKEVREVLESARKQKFFDSKPPILFIDEIHRFNKSQQDSLLGAV 120

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E   + L+    E PS   +   LSR  +             L DR              
Sbjct: 121 EQGVVTLIGATTENPSFEVISPLLSRCQVYILQPMTDGELQTLLDR-------------A 167

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMR-SRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           L T  +           +    E   R S G  R    +L  +   A      TIT +  
Sbjct: 168 LATDPE-----LKTREIEVQETEALFRFSGGDARKLLNILDIITGAA--NGKVTITNQYV 220

Query: 247 DAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
              L +     DK G    D+                   ISA +   R +  +    Y+
Sbjct: 221 TDCLQQNIALYDKNGEQHYDV-------------------ISAFIKSVRGSDPNAAIYYL 261

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +       PR   R L+ +A + + +  P+
Sbjct: 262 ARMLAGGEEPRFIARRLVILASEDISLANPN 292


>gi|47566587|ref|ZP_00237409.1| ATPase, AAA family [Bacillus cereus G9241]
 gi|47556617|gb|EAL14949.1| ATPase, AAA family [Bacillus cereus G9241]
          Length = 431

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 76/327 (23%), Positives = 124/327 (37%), Gaps = 43/327 (13%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           +      +RP  ++E  GQ       K+     +A       ++  GPPG GKT++A  +
Sbjct: 2   KQPLAHRMRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           A   G  FR  +  V     D+  ++   +     +L +DE+HRL    ++ L P +E  
Sbjct: 60  AGSTGTPFRLLNA-VTHNKKDMEVVVQEAKMYRHLILILDEVHRLDKAKQDFLLPHLESG 118

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
            L L+      P         SR        ++  L    +D   I ++    + E    
Sbjct: 119 LLTLIGATTSNPFHAINSAIRSRC-------QIFELHALTEDDLLIGLKRALEDKE---- 167

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR--DFAEVAHAKTITREIADA 248
              +G     + VT EA    A  S G  R A   L       F     A  IT EIA+ 
Sbjct: 168 ---KGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEE 224

Query: 249 ALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
            L + +   DK G    D+  L+   ++  G  V              A+  L    +I+
Sbjct: 225 CLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDV------------NAALHYLAR--LIE 268

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            G +Q    GR L+ +A++ +G+  P 
Sbjct: 269 AGDLQSI--GRRLLIMAYEDIGLASPQ 293


>gi|295688943|ref|YP_003592636.1| AAA ATPase central domain-containing protein [Caulobacter segnis
           ATCC 21756]
 gi|295430846|gb|ADG10018.1| AAA ATPase central domain protein [Caulobacter segnis ATCC 21756]
          Length = 433

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 71/345 (20%), Positives = 115/345 (33%), Gaps = 58/345 (16%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D                  LRP++L+E  GQ             A A    L  ++  
Sbjct: 1   MSDLFQAAGLTPHAPAPLADRLRPQSLDEVVGQQHLLGPEGPIGRMAAAH--RLASMILW 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIH 115
           GPPG GKTT+A+++A+  G  F+  S        + KA + A          +LF+DEIH
Sbjct: 59  GPPGTGKTTIARLLAKAGGYEFQQISAVFSGVADLKKAFEQARARRMAGQSTLLFVDEIH 118

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P +E+  + L+    E PS       LSR  +                 
Sbjct: 119 RFNRAQQDGFLPFVEEGIVTLVGATTENPSFELNGALLSRCQVFVLKR------------ 166

Query: 174 FGIPIRLNFYEIEDLKTIVQR--GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
                       + L+ ++QR   A+   L V  EA   +   + G  R    L   +  
Sbjct: 167 ---------LTEDSLEQLLQRAEAAENRLLPVDAEARSSLVAMADGDGRYLLTLAETLFS 217

Query: 232 FAEVAHAKTITREIADAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGL 289
              +     +        L +   A DK   +  +L                   ISA  
Sbjct: 218 ---IGTDSPLNPTQLGQFLQKRRPAYDKDREEHYNL-------------------ISALH 255

Query: 290 SEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
              R +  D    ++ +       P    R L+ +A + +G   P
Sbjct: 256 KSVRGSDPDAALYWLARMLEGGEDPLFIARRLVRMASEDIGAADP 300


>gi|322419817|ref|YP_004199040.1| AAA ATPase central domain-containing protein [Geobacter sp. M18]
 gi|320126204|gb|ADW13764.1| AAA ATPase central domain protein [Geobacter sp. M18]
          Length = 434

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 77/340 (22%), Positives = 130/340 (38%), Gaps = 52/340 (15%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L + N  Q       +RPRT+ E+ GQ       K+     +   + +  ++F GPPG G
Sbjct: 3   LFNGNREQFAPLAERMRPRTISEYLGQGHLLGEGKLLRSLIET--DRVTSLIFWGPPGSG 60

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSI 119
           KTTLA+++A     +F   S  +++   ++  ++   E+       R +LF+DEIHR + 
Sbjct: 61  KTTLARIIAGATKSHFIFFSA-IMSGIKEIREVVKEAEETLKYHGRRTILFVDEIHRFNK 119

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             ++   P +E     ++    E PS   +   LSR  ++          NPL +     
Sbjct: 120 SQQDAFLPYVERGTFTMIGATTENPSFEVIAPLLSRCKVLVL--------NPLSEEEIRQ 171

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
           I  N           +RG   + L    EA   +A ++ G  R+A   L      A +A 
Sbjct: 172 ILQNALTDR------ERGLGESELTAAPEALAFMAEQAGGDARVALNTLETA---ARLAR 222

Query: 238 AKTITREIADAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDA 295
            + IT E A  A  +     DK G +                       ISA +   R +
Sbjct: 223 DREITLETAREASQKKPLLYDKGGEEHY-------------------NVISAFIKSMRGS 263

Query: 296 IEDLIEPYMIQQGFIQRTPRG--RLLMPIAWQHLGIDIPH 333
             D    ++ +       P    R ++  A + +G   P 
Sbjct: 264 DPDAALYWLARMIEAGEDPIFILRRMVIFASEDVGNADPR 303


>gi|163942149|ref|YP_001647033.1| recombination factor protein RarA [Bacillus weihenstephanensis
           KBAB4]
 gi|163864346|gb|ABY45405.1| AAA ATPase central domain protein [Bacillus weihenstephanensis
           KBAB4]
          Length = 428

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 78/327 (23%), Positives = 125/327 (38%), Gaps = 43/327 (13%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           +      +RP  ++E  GQ       K+     +A       ++  GPPG GKT++A  +
Sbjct: 2   KQPLAHRMRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           A   G  FR  +  V     D+  ++   +     VL +DE+HRL    ++ L P +E  
Sbjct: 60  AGSTGTLFRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESG 118

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
            L L+      P         SR        ++  L    +D   I ++    + E    
Sbjct: 119 LLTLIGATTSNPFHAINSAIRSRC-------QIFELHALTEDDILIGLKRALEDQE---- 167

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR--DFAEVAHAKTITREIADA 248
              +G     + VTDEA    A  S G  R A   L       F     A  IT EIA+ 
Sbjct: 168 ---KGLGEYDVTVTDEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEE 224

Query: 249 ALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
            L + +   DK G    D+  L+   ++  G  V              A+  L    +I+
Sbjct: 225 CLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDV------------NAALHYLAR--LIE 268

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            G +Q    GR L+ +A++ +G+  P 
Sbjct: 269 AGDLQSI--GRRLLIMAYEDIGLASPQ 293


>gi|156934613|ref|YP_001438529.1| recombination factor protein RarA [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156532867|gb|ABU77693.1| hypothetical protein ESA_02447 [Cronobacter sakazakii ATCC BAA-894]
          Length = 428

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 71/326 (21%), Positives = 110/326 (33%), Gaps = 50/326 (15%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  L ++ GQ    +  K    A +A    L  ++  GPPG GKTTLA+V+ R    +
Sbjct: 1   MRPENLAQYIGQQHLLAPGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIGRYANAD 58

Query: 82  FRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
               S        I +A + A    N   R +LF+DE+HR +   ++   P +ED  +  
Sbjct: 59  VERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 118

Query: 137 M--VGEGPSARSVKINLSRFTLIAATT-----RVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           +    E PS       LSR  +    +        +LT  + DR                
Sbjct: 119 IGATTENPSFELNSALLSRARVYLLKSLTVEDIEQVLTQAMTDR---------------- 162

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
              +RG     + + DE    IA    G  R A   L  + D A                
Sbjct: 163 ---ERGYGGQDIVLPDETRLAIAELVNGDARRALNTLEMMADMAPTDDNGKRVLRPELLT 219

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
            +         ++ D  Y               + ISA     R +  D    +  +   
Sbjct: 220 EIAGERSARFDNKGDRFY---------------DLISALHKSVRGSAPDAALYWYARIIS 264

Query: 310 IQRTPR--GRLLMPIAWQHLGIDIPH 333
               P    R  + IA + +G   P 
Sbjct: 265 AGGDPLYVARRCLAIASEDVGNADPR 290


>gi|327405355|ref|YP_004346193.1| AAA ATPase central domain-containing protein [Fluviicola taffensis
           DSM 16823]
 gi|327320863|gb|AEA45355.1| AAA ATPase central domain protein [Fluviicola taffensis DSM 16823]
          Length = 424

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 76/332 (22%), Positives = 127/332 (38%), Gaps = 59/332 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP  L E+ GQ           +A +++   L  ++F GPPG+GKTTLA ++A+
Sbjct: 4   PLAERMRPNELSEYIGQRHLLEENGALKKAIESK--ILPSIIFWGPPGVGKTTLANLLAK 61

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAM 129
           +L   F + S  + +   D+  ++   E          VLFIDEIHR S   ++ L  A+
Sbjct: 62  QLNRPFYTLSA-ISSGVKDIREIIQKAESQGMFQTSGAVLFIDEIHRFSKSQQDSLLGAV 120

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E   + L+    E PS   +   LSR  +    +                     + +ED
Sbjct: 121 EKGTITLIGATTENPSFEVISALLSRCQVYTLES---------------------HTLED 159

Query: 188 LKTIVQRGAK----LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           L  ++ R  K    L+   +       +   + G  R    LL  V +    +    IT 
Sbjct: 160 LLELINRAIKQDILLSKRKIELREYKSLIAVAGGDARKMLNLLELVVNTFSPSETAIITD 219

Query: 244 EIADA-ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           E+ +  A  R+  DK G    D+                   ISA +   R +  D    
Sbjct: 220 ELVNQLAQQRVRYDKDGEQHYDI-------------------ISAFIKSIRGSDPDGAVY 260

Query: 303 YMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           ++ +       P+   R L+  A + +G+  P
Sbjct: 261 WLARMIEGGEDPKFIARRLLISAAEDVGLANP 292


>gi|240850808|ref|YP_002972208.1| recombination factor protein RarA [Bartonella grahamii as4aup]
 gi|240267931|gb|ACS51519.1| recombination factor protein RarA [Bartonella grahamii as4aup]
          Length = 439

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 65/338 (19%), Positives = 120/338 (35%), Gaps = 55/338 (16%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
               V++       +RP +L +  GQ        +          ++  ++F GPPG GK
Sbjct: 10  FDFQVNKNQPLAERMRPCSLNDVVGQKHLIGEDGLLSRMV--ATGSIGSMIFWGPPGTGK 67

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIV 121
           TT+A+++A E    F   S  +     +L  +    + R       +LF+DEIHR +   
Sbjct: 68  TTVARLLALETSFAFEQVSA-IFTGVSELKKIFEVAQRRFISGDKTLLFVDEIHRFNRAQ 126

Query: 122 EEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           ++     ME+  + L+    E PS       LSR  ++   +                  
Sbjct: 127 QDSFLSVMEEGIVVLIGATTENPSFELSAALLSRARVLTFLS------------------ 168

Query: 180 LNFYEIEDLKTIVQRGAKLT--GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
              ++ E L  +++R  ++    L + ++A   +   S G  R+A  L   V   A +  
Sbjct: 169 ---HDHESLDMLLRRAEEVEGKTLPLDNDARDVLIEMSDGDARVALTLAEEVWSIAPLGE 225

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
                            +D +   ++       +     G       ISA     R +  
Sbjct: 226 ----------------ILDVVALQKV---IQRRVPIYDKGRDGHYNLISALHKSVRGSDP 266

Query: 298 DLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           D    Y+ +       P   GR L+ +A + +G+  P 
Sbjct: 267 DAALYYLARMLDAGEDPLYIGRRLVRMAVEDVGLADPQ 304


>gi|229158015|ref|ZP_04286086.1| hypothetical protein bcere0010_41940 [Bacillus cereus ATCC 4342]
 gi|228625468|gb|EEK82224.1| hypothetical protein bcere0010_41940 [Bacillus cereus ATCC 4342]
          Length = 428

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 77/327 (23%), Positives = 124/327 (37%), Gaps = 43/327 (13%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           +      +RP  ++E  GQ       K+     +A       ++  GPPG GKT++A  +
Sbjct: 2   KQPLAHRMRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           A   G  FR  +  V     D+  ++   +     VL +DE+HRL    ++ L P +E  
Sbjct: 60  AGSTGTPFRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESG 118

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
            L L+      P         SR        ++  L    +D   I ++    + E    
Sbjct: 119 LLTLIGATTSNPFHAINSAIRSRC-------QIFELHALTEDDLLIGLKRALEDKE---- 167

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR--DFAEVAHAKTITREIADA 248
              +G     + VT EA    A  S G  R A   L       F     A  IT EIA+ 
Sbjct: 168 ---KGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEE 224

Query: 249 ALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
            L + +   DK G    D+  L+   ++  G  V              A+  L    +I+
Sbjct: 225 CLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDV------------NAALHYLAR--LIE 268

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            G +Q    GR L+ +A++ +G+  P 
Sbjct: 269 AGDLQSI--GRRLLIMAYEDIGLASPQ 293


>gi|118444607|ref|YP_878358.1| recombination factor protein RarA [Clostridium novyi NT]
 gi|118135063|gb|ABK62107.1| ATPase, AAA family [Clostridium novyi NT]
          Length = 419

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 75/348 (21%), Positives = 124/348 (35%), Gaps = 52/348 (14%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD   L  +  +        +RPR L EF GQ       K+     +   + L  ++  G
Sbjct: 1   MDLFDLALKKSNVNKPLAERMRPRNLNEFFGQKHIIGKGKLLRRLIET--DNLTSIILYG 58

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEI 114
           PPG+GKTTLA +++ E    F   +    A   ++   +   E+       R + FIDEI
Sbjct: 59  PPGVGKTTLAYIISLETKSEFVKLNA-TSAGVKEIREYIKKAEEVLKFYGKRTIFFIDEI 117

Query: 115 HRLSI-IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           H L     ++ L  A+E   + L+    E P     +  LSR  +    T        L+
Sbjct: 118 HSLKKGAQQDALLDAIEKGTVILIGATTENPYFEINRALLSRSKIFQLET--------LK 169

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
           +   I +  N  + E       RG     + +  +A   IA  S G  R +   L     
Sbjct: 170 EEEIIDLLYNALKDE------TRGYGKLKVKIHKDAINIIAKLSGGDGRASLNTLELAIL 223

Query: 232 FAEVAHAK--TITREIADAALL--RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISA 287
                +     IT++I    +    +  D  G +  D+                    SA
Sbjct: 224 STSRNNDGFIYITKDIIKECVQKPMVNYDATGDNHYDI-------------------TSA 264

Query: 288 GLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +   R +  D    +  +       PR   R L+  A + +G+  P+
Sbjct: 265 FIKSIRGSNPDAALYWFGRMILGGEDPRFIVRRLIVHASEDIGMKDPN 312


>gi|296139682|ref|YP_003646925.1| ATPase AAA [Tsukamurella paurometabola DSM 20162]
 gi|296027816|gb|ADG78586.1| AAA ATPase central domain protein [Tsukamurella paurometabola DSM
           20162]
          Length = 456

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 78/325 (24%), Positives = 123/325 (37%), Gaps = 50/325 (15%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            +RPR+L+E  GQ              +    A   V+  GPPG GKTT+A +++   G 
Sbjct: 39  RMRPRSLDEVLGQEHLLGPGTPLRRLIEGAGAA--SVILYGPPGTGKTTIASLISGATGR 96

Query: 81  NFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQL 134
            F + S  + A   D+ A++     R       VLFIDE+HR S   ++ L  A+E+  +
Sbjct: 97  RFEALSA-LSAGVKDVRAVIEMARRRLLVDEQTVLFIDEVHRFSKAQQDALLAAVENRVV 155

Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            L+    E PS   V   LSR  ++          + L DR         Y+        
Sbjct: 156 LLVAATTENPSFSVVSPLLSRSLILQLRPLEPGHISELIDR--ALTDPRGYDG------- 206

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL- 251
                   L +TDEA   +   + G  R +   L    D A    A  I  +I ++++  
Sbjct: 207 -------ALTITDEARDHLVRLAGGDARRSLTALEAAADVAMGEQAAEIDLDIVESSIDT 259

Query: 252 -RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
             +  D+ G    D+                   ISA +   R +  D    Y+ +    
Sbjct: 260 AAVRYDRDGDQHYDV-------------------ISAFIKSIRGSDVDAALHYLARMITA 300

Query: 311 QRTPR--GRLLMPIAWQHLGIDIPH 333
              PR   R L+  A + +G+  P 
Sbjct: 301 GEDPRFIARRLVVHASEDIGMADPQ 325


>gi|313623688|gb|EFR93840.1| recombination factor protein RarA [Listeria innocua FSL J1-023]
          Length = 427

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 71/322 (22%), Positives = 130/322 (40%), Gaps = 37/322 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+ L+E  GQ       K+     KA+   L  ++  GPPG+GKT++A  +A 
Sbjct: 5   PLAYRMRPKALDEIVGQTHLVGKDKIIYRMVKAKQ--LSSMILYGPPGIGKTSIASAIAG 62

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR+ +     K   ++ A    +    +L +DE+HRL    ++ L P +E   + 
Sbjct: 63  STKYAFRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQDFLLPLLESGAI- 121

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           +++G   S   + IN +    I + T++  L     +   I        ++      +RG
Sbjct: 122 ILIGATTSNPYIAINPA----IRSRTQIFELKPLTVEDIMI-------TMDRALRDKERG 170

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT--ITREIADAALLRL 253
                + + + A    A  S G  R A   L      +E        IT ++A+  L + 
Sbjct: 171 LGNYEVEIDEFAKKHFATASNGDVRSALNALELAVISSEPNEDGIIHITLDVAEECLQKK 230

Query: 254 --AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
             A DK G    D+  L+   ++  G  V              A+  +    +I+ G + 
Sbjct: 231 SLAHDKDGDAHYDV--LSAFQKSVRGSDV------------NAALHYMGR--LIEAGDLV 274

Query: 312 RTPRGRLLMPIAWQHLGIDIPH 333
              R R+L+ +A++ +G+  P 
Sbjct: 275 SISR-RMLV-MAYEDIGLANPQ 294


>gi|327439662|dbj|BAK16027.1| ATPase [Solibacillus silvestris StLB046]
          Length = 426

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 69/326 (21%), Positives = 123/326 (37%), Gaps = 41/326 (12%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           Q +     +RPRT+ E  GQ     +        +     +  +L  GPPG+GKT++A  
Sbjct: 2   QNEPLAYKMRPRTIHEVVGQQHIIGSATPLFRMIEKGH--VPSMLLYGPPGVGKTSIANA 59

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
           +A    + F + +    A   D+  ++    +  + +LF+DEIHR + + ++ L P +E+
Sbjct: 60  IAGSSKIPFFALNA-THAGKKDIEQIVMDARMSGKVLLFLDEIHRFNKLQQDTLLPHVEN 118

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             + L+    E P         SR   I    R+        D     +     + E   
Sbjct: 119 GSIVLIGATTENPFHDVNPAIRSRCGEILQLERLTG------DDIIQLLNQALADKE--- 169

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
               RG     + +T++   +IA  S G  R A  LL  V   ++     TI  + A  A
Sbjct: 170 ----RGLGHLEIDITEQQIEKIANASNGDARKALTLLESVYYASDEKDGVTIINDNAIDA 225

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY---MIQ 306
           L +                        GG      +SA     R +  +    Y   +++
Sbjct: 226 LAKRIG----------------VFGDKGGSHFYNLLSALQKSVRGSDPNAALYYLAHLLE 269

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIP 332
            G +      R L+ +A++ +G+  P
Sbjct: 270 NGDLVAVC--RRLLVMAYEDIGLANP 293


>gi|189460834|ref|ZP_03009619.1| hypothetical protein BACCOP_01481 [Bacteroides coprocola DSM 17136]
 gi|189432408|gb|EDV01393.1| hypothetical protein BACCOP_01481 [Bacteroides coprocola DSM 17136]
          Length = 424

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 74/330 (22%), Positives = 121/330 (36%), Gaps = 53/330 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+TL+++ GQ        V        +  +   +  GPPG+GKTTLAQ++A 
Sbjct: 4   PLAERMRPKTLDDYIGQKHLVGEGAVLRRMI--DSGRISSFILWGPPGVGKTTLAQIIAN 61

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAM 129
            L   F + S  V +   D+  ++          +   +LFIDEIHR S   ++ L  A+
Sbjct: 62  RLETPFYTLSA-VTSGVKDVRDVIDKARSNRFFSQQSPILFIDEIHRFSKSQQDSLLGAV 120

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E   + L+    E PS   ++  LSR  L    +                  L       
Sbjct: 121 ETGVVTLIGATTENPSFEVIRPLLSRCQLYVLKSLE-------------KDDLLELLHHA 167

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           + T V    K   + + +  A  +   S G  R    +L  V + A+      IT +   
Sbjct: 168 ITTDV--ILKEKQVELRETDA--MLRYSGGDARKLLNILELVVE-ADDNVPVVITDDKVV 222

Query: 248 AALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
             L +   A DK G    D+                   ISA +   R +  D    ++ 
Sbjct: 223 ERLQQNPLAYDKDGEMHYDI-------------------ISAFIKSIRGSDPDGALYWLA 263

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +       P    R L+  A + +G+  P+
Sbjct: 264 RMVEGGEDPAFIARRLVISASEDIGLANPN 293


>gi|160889857|ref|ZP_02070860.1| hypothetical protein BACUNI_02288 [Bacteroides uniformis ATCC 8492]
 gi|156860849|gb|EDO54280.1| hypothetical protein BACUNI_02288 [Bacteroides uniformis ATCC 8492]
          Length = 423

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 78/330 (23%), Positives = 123/330 (37%), Gaps = 53/330 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRPRTL+E+ GQ        V  +   A    +   +  GPPG+GKTTLAQ++A 
Sbjct: 3   PLAERLRPRTLDEYIGQKHLVGPGAVLRKMIDA--GRISSFILWGPPGVGKTTLAQIIAN 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAM 129
           +L   F + S  V +   D+  ++   +          +LFIDEIHR S   ++ L  A+
Sbjct: 61  KLETPFYTLSA-VTSGVKDVRDVIERAKSNRFFSQASPILFIDEIHRFSKSQQDSLLGAV 119

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E   + L+    E PS   ++  LSR  L    +        L  R      +       
Sbjct: 120 EQGTVTLIGATTENPSFEVIRPLLSRCQLYTLKSLEKDDLLELLQRAITTDTV------- 172

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
                    K   + + +  A  +   S G  R    +L  V D +E      IT ++  
Sbjct: 173 --------LKERKIELKETTA--MLRFSGGDARKLLNILELVID-SEATDPVLITDDMVT 221

Query: 248 AALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
             L +   A DK G    D+                   ISA +   R +  D    ++ 
Sbjct: 222 ERLQQNPLAYDKDGEMHYDI-------------------ISAFIKSIRGSDPDGAIYWLA 262

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +       P    R L+  A + +G+  P+
Sbjct: 263 RMVEGGEDPAFIARRLVISASEDIGLANPN 292


>gi|228999186|ref|ZP_04158768.1| hypothetical protein bmyco0003_37430 [Bacillus mycoides Rock3-17]
 gi|229006734|ref|ZP_04164368.1| hypothetical protein bmyco0002_36360 [Bacillus mycoides Rock1-4]
 gi|228754595|gb|EEM04006.1| hypothetical protein bmyco0002_36360 [Bacillus mycoides Rock1-4]
 gi|228760803|gb|EEM09767.1| hypothetical protein bmyco0003_37430 [Bacillus mycoides Rock3-17]
          Length = 428

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 75/327 (22%), Positives = 123/327 (37%), Gaps = 43/327 (13%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           +      +RP  ++E  GQ       K+     +A       ++  GPPG GKT++A  +
Sbjct: 2   KQPLAHRMRPTNIKEIIGQEHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           A   G  FR  +  V     D+  ++   +     VL +DE+HRL    ++ L P +E  
Sbjct: 60  AGSTGTPFRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESG 118

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
            L L+      P         SR  +           + L +   +       E +    
Sbjct: 119 LLTLIGATTSNPFHAINSAIRSRCQIFEL--------HALTENDILIGLKRALEDK---- 166

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR--DFAEVAHAKTITREIADA 248
             ++G     + VTDEA    A  S G  R A   L       F     +  IT EIA+ 
Sbjct: 167 --EKGLGEYHVTVTDEAMRHFANASGGDMRSAYNALELAVLSSFTTDDQSTEITLEIAEE 224

Query: 249 ALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
            L + +   DK G    D+  L+   ++  G  V              A+  L    +I+
Sbjct: 225 CLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDV------------NAALHYLAR--LIE 268

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            G +Q    GR L+ +A++ +G+  P 
Sbjct: 269 AGDLQSI--GRRLLIMAYEDIGLASPQ 293


>gi|37589162|gb|AAH58744.1| Wrnip1 protein [Mus musculus]
          Length = 526

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 67/346 (19%), Positives = 125/346 (36%), Gaps = 35/346 (10%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLG 66
           R + +       +RP TL+++ GQ  A      L+  +EA +     +  ++  GPPG G
Sbjct: 80  RQMLEGKPLADKMRPDTLQDYIGQSRAVGQETLLRSLLEANE-----IPSLILWGPPGCG 134

Query: 67  KTTLAQVVARELGVNFRST--SGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRL 117
           KTTLA ++A     +           AK  D+  ++   +        + +LFIDEIHR 
Sbjct: 135 KTTLAHIIANNSKKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRF 194

Query: 118 SIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
           +   ++   P +E   + L+    E PS +     LSR  +I            +  R  
Sbjct: 195 NKSQQDTFLPHVECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAI 254

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLA---VTDEAACEIAMRSRGTPRIAGRLLRRVR-- 230
             + ++  +       +   +  +      + D+A   +A  S G  R     L+     
Sbjct: 255 NSLGIHVLDSSRPTDPLSHSSNCSSEPSVFIEDKAVDTLAYLSDGDARTGLNGLQLAVLA 314

Query: 231 --DFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAG 288
                +V   K+         L+     K G  +  + Y      ++         ISA 
Sbjct: 315 RLSSRKVFCKKSGQTYSPSRVLITENDVKEGLQRSHILYDRAGEEHYNC-------ISAL 367

Query: 289 LSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
               R + ++    ++ +       P    R L+  A + +G+  P
Sbjct: 368 HKAMRGSDQNASLYWLARMLEGGEDPLYVARRLVRFASEDIGLADP 413


>gi|229198526|ref|ZP_04325230.1| hypothetical protein bcere0001_40540 [Bacillus cereus m1293]
 gi|228585029|gb|EEK43143.1| hypothetical protein bcere0001_40540 [Bacillus cereus m1293]
          Length = 428

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 77/327 (23%), Positives = 124/327 (37%), Gaps = 43/327 (13%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           +      +RP  ++E  GQ       K+     +A       ++  GPPG GKT++A  +
Sbjct: 2   KQPLAHRMRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           A   G  FR  +  V     D+  ++   +     VL +DE+HRL    ++ L P +E  
Sbjct: 60  AGSTGTPFRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESG 118

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
            L L+      P         SR        ++  L    +D   I ++    + E    
Sbjct: 119 LLTLIGATTSNPFHAINSAIRSRC-------QIFELHALTEDDLLIGLKRALEDKE---- 167

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR--DFAEVAHAKTITREIADA 248
              +G     + VT EA    A  S G  R A   L       F     A  IT EIA+ 
Sbjct: 168 ---KGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEE 224

Query: 249 ALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
            L + +   DK G    D+  L+   ++  G  V              A+  L    +I+
Sbjct: 225 CLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDV------------NAALHYLAR--LIE 268

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            G +Q    GR L+ +A++ +G+  P 
Sbjct: 269 AGDLQSI--GRRLLIMAYEDIGLASPQ 293


>gi|218905594|ref|YP_002453428.1| ATPase, AAA family [Bacillus cereus AH820]
 gi|228917033|ref|ZP_04080593.1| hypothetical protein bthur0012_42450 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228929444|ref|ZP_04092465.1| hypothetical protein bthur0010_41290 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|229123940|ref|ZP_04253132.1| hypothetical protein bcere0016_42250 [Bacillus cereus 95/8201]
 gi|301055907|ref|YP_003794118.1| ATPase, AAA family [Bacillus anthracis CI]
 gi|218539593|gb|ACK91991.1| ATPase, AAA family [Bacillus cereus AH820]
 gi|228659242|gb|EEL14890.1| hypothetical protein bcere0016_42250 [Bacillus cereus 95/8201]
 gi|228830232|gb|EEM75848.1| hypothetical protein bthur0010_41290 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228842640|gb|EEM87728.1| hypothetical protein bthur0012_42450 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|300378076|gb|ADK06980.1| ATPase, AAA family [Bacillus cereus biovar anthracis str. CI]
          Length = 428

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 77/327 (23%), Positives = 124/327 (37%), Gaps = 43/327 (13%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           +      +RP  ++E  GQ       K+     +A       ++  GPPG GKT++A  +
Sbjct: 2   KQPLAHRMRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           A   G  FR  +  V     D+  ++   +     VL +DE+HRL    ++ L P +E  
Sbjct: 60  AGSTGTPFRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESG 118

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
            L L+      P         SR        ++  L    +D   I ++    + E    
Sbjct: 119 LLTLIGATTSNPFHAINSAIRSRC-------QIFELHALTEDDLLIGLKRALEDKE---- 167

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR--DFAEVAHAKTITREIADA 248
              +G     + VT EA    A  S G  R A   L       F     A  IT EIA+ 
Sbjct: 168 ---KGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEE 224

Query: 249 ALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
            L + +   DK G    D+  L+   ++  G  V              A+  L    +I+
Sbjct: 225 CLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDV------------NAALHYLAR--LIE 268

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            G +Q    GR L+ +A++ +G+  P 
Sbjct: 269 AGDLQSI--GRRLLIMAYEDIGLASPQ 293


>gi|324328302|gb|ADY23562.1| recombination factor protein RarA [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 428

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 77/327 (23%), Positives = 124/327 (37%), Gaps = 43/327 (13%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           +      +RP  ++E  GQ       K+     +A       ++  GPPG GKT++A  +
Sbjct: 2   KQPLAHRMRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           A   G  FR  +  V     D+  ++   +     VL +DE+HRL    ++ L P +E  
Sbjct: 60  AGSTGTPFRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESG 118

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
            L L+      P         SR        ++  L    +D   I ++    + E    
Sbjct: 119 LLTLIGATTSNPFHAINSAIRSRC-------QIFELHALTEDDLLIGLKRALEDKE---- 167

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR--DFAEVAHAKTITREIADA 248
              +G     + VT EA    A  S G  R A   L       F     A  IT EIA+ 
Sbjct: 168 ---KGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEE 224

Query: 249 ALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
            L + +   DK G    D+  L+   ++  G  V              A+  L    +I+
Sbjct: 225 CLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDV------------NAALHYLAR--LIE 268

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            G +Q    GR L+ +A++ +G+  P 
Sbjct: 269 AGDLQSI--GRRLLIMAYEDIGLASPQ 293


>gi|256840534|ref|ZP_05546042.1| recombination factor protein RarA [Parabacteroides sp. D13]
 gi|256737806|gb|EEU51132.1| recombination factor protein RarA [Parabacteroides sp. D13]
          Length = 423

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 73/330 (22%), Positives = 117/330 (35%), Gaps = 53/330 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP+TL+++ GQ        V  +   A    +   +  GPPG+GKTTLAQ++A 
Sbjct: 5   PLAERLRPKTLDDYIGQKHLVGQGAVLRKMIDA--GRVPSFILWGPPGVGKTTLAQIIAN 62

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAM 129
           +L   F + S  + +   D+  ++   +          +LFIDEIHR S   ++ L  A+
Sbjct: 63  KLDAPFYTLSA-ISSGVKDVREVIEKAKSNRFFNTVSPILFIDEIHRFSKSQQDSLLNAV 121

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E   + L+    E PS   ++  LSR  +    +        L                 
Sbjct: 122 ETGVVTLIGATTENPSFEVIRPLLSRCQVYVLKSLDKNDLLTL----------------- 164

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           L   +     L    +       +   S G  R    +L  V   AE +    I  E   
Sbjct: 165 LHKAIAEDVVLKDKNIRLTETDAMLRYSGGDARKLLNILELVV-SAEESDDIEILDEKVV 223

Query: 248 AALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
             L     A DK G    D+                   ISA +   R +  D    ++ 
Sbjct: 224 ERLQENPAAYDKGGEMHYDI-------------------ISAFIKSIRGSDPDGAIYWLA 264

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +       P    R L+  A + +G+  P+
Sbjct: 265 RMVAGGEDPEFIARRLVISASEDIGLANPN 294


>gi|228470835|ref|ZP_04055683.1| ATPase, AAA family [Porphyromonas uenonis 60-3]
 gi|228307508|gb|EEK16513.1| ATPase, AAA family [Porphyromonas uenonis 60-3]
          Length = 436

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 73/333 (21%), Positives = 129/333 (38%), Gaps = 50/333 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACS---NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
                +RP+TLEE+ GQ         L+V +E        +  ++  GPPG+GKTTLA++
Sbjct: 7   PLAERMRPKTLEEYVGQSHLVGANAPLRVMLERG-----HIPSMILWGPPGVGKTTLARL 61

Query: 74  VARELGVNFRSTSG---------PVIAKAGD-LAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           +++ +     S S            + +A D  A L +  + R +LFIDEIHR S   ++
Sbjct: 62  LSQLMQCRCYSLSAVGSGVADVRKTLQEAKDAQAGLFSQHQGRPILFIDEIHRFSKSQQD 121

Query: 124 ILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
            L  A+E   + L+    E PS + ++  LSR  +         +  PL+D     +   
Sbjct: 122 SLLAAVEQGVVTLIGATTENPSFQVIRPLLSRCQV--------FVLKPLEDSDLSQLIDR 173

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
            +  + L +          +++       +   + G  R    LL      A   H    
Sbjct: 174 VFATDPLFS-------RYHVSLEGADREMLIHLAGGDARKLLNLLEMTLSMALEQHPDET 226

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T ++   A+  +A  +      D             G +  +  SA +   R +  D   
Sbjct: 227 TVQLTGEAIASVARQQPAAFDRD-------------GELHYDIASAFIKSIRGSDPDAAL 273

Query: 302 PYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
            +M +       PR   R ++  A + +G+  P
Sbjct: 274 YWMARLIEGGEEPRFIARRVVISAAEDIGLANP 306


>gi|229135222|ref|ZP_04264021.1| hypothetical protein bcere0014_41240 [Bacillus cereus BDRD-ST196]
 gi|229169142|ref|ZP_04296857.1| hypothetical protein bcere0007_40940 [Bacillus cereus AH621]
 gi|228614370|gb|EEK71480.1| hypothetical protein bcere0007_40940 [Bacillus cereus AH621]
 gi|228648264|gb|EEL04300.1| hypothetical protein bcere0014_41240 [Bacillus cereus BDRD-ST196]
          Length = 428

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 78/327 (23%), Positives = 125/327 (38%), Gaps = 43/327 (13%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           +      +RP  ++E  GQ       K+     +A       ++  GPPG GKT++A  +
Sbjct: 2   KQPLAHRMRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           A   G  FR  +  V     D+  ++   +     VL +DE+HRL    ++ L P +E  
Sbjct: 60  AGSTGTLFRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESG 118

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
            L L+      P         SR        ++  L    +D   I ++    + E    
Sbjct: 119 LLTLIGATTSNPFHAINSAIRSRC-------QIFELHALTEDDILIGLKRALEDKE---- 167

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR--DFAEVAHAKTITREIADA 248
              +G     + VTDEA    A  S G  R A   L       F     A  IT EIA+ 
Sbjct: 168 ---KGLGEYDVTVTDEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAVEITLEIAEE 224

Query: 249 ALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
            L + +   DK G    D+  L+   ++  G  V              A+  L    +I+
Sbjct: 225 CLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDV------------NAALHYLAR--LIE 268

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            G +Q    GR L+ +A++ +G+  P 
Sbjct: 269 AGDLQSI--GRRLLIMAYEDIGLASPQ 293


>gi|229175073|ref|ZP_04302591.1| hypothetical protein bcere0006_41550 [Bacillus cereus MM3]
 gi|228608441|gb|EEK65745.1| hypothetical protein bcere0006_41550 [Bacillus cereus MM3]
          Length = 428

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 77/327 (23%), Positives = 124/327 (37%), Gaps = 43/327 (13%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           +      +RP  ++E  GQ       K+     +A       ++  GPPG GKT++A  +
Sbjct: 2   KQPLAHRMRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           A   G  FR  +  V     D+  ++   +     VL +DE+HRL    ++ L P +E  
Sbjct: 60  AGSTGTPFRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESG 118

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
            L L+      P         SR        ++  L    +D   I ++    + E    
Sbjct: 119 LLTLIGATTSNPFHAINSAIRSRC-------QIFELHALTEDDLLIGLKRALEDKE---- 167

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR--DFAEVAHAKTITREIADA 248
              +G     + VT EA    A  S G  R A   L       F     A  IT EIA+ 
Sbjct: 168 ---KGLGEYDVTVTSEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEE 224

Query: 249 ALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
            L + +   DK G    D+  L+   ++  G  V              A+  L    +I+
Sbjct: 225 CLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDV------------NAALHYLAR--LIE 268

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            G +Q    GR L+ +A++ +G+  P 
Sbjct: 269 AGDLQSI--GRRLLIMAYEDIGLASPQ 293


>gi|301311175|ref|ZP_07217103.1| ATPase, AAA family [Bacteroides sp. 20_3]
 gi|300830749|gb|EFK61391.1| ATPase, AAA family [Bacteroides sp. 20_3]
          Length = 422

 Score =  146 bits (369), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 73/330 (22%), Positives = 117/330 (35%), Gaps = 53/330 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP+TL+++ GQ        V  +   A    +   +  GPPG+GKTTLAQ++A 
Sbjct: 4   PLAERLRPKTLDDYIGQKHLVGQGAVLRKMIDA--GRVPSFILWGPPGVGKTTLAQIIAN 61

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAM 129
           +L   F + S  + +   D+  ++   +          +LFIDEIHR S   ++ L  A+
Sbjct: 62  KLDAPFYTLSA-ISSGVKDVREVIEKAKSNRFFNTVSPILFIDEIHRFSKSQQDSLLNAV 120

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E   + L+    E PS   ++  LSR  +    +        L                 
Sbjct: 121 ETGVVTLIGATTENPSFEVIRPLLSRCQVYVLKSLDKNDLLTL----------------- 163

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           L   +     L    +       +   S G  R    +L  V   AE +    I  E   
Sbjct: 164 LHKAIAEDVVLKDKNIRLTETDAMLRYSGGDARKLLNILELVV-SAEESDDIEILDEKVV 222

Query: 248 AALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
             L     A DK G    D+                   ISA +   R +  D    ++ 
Sbjct: 223 ERLQENPAAYDKGGEMHYDI-------------------ISAFIKSIRGSDPDGAIYWLA 263

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +       P    R L+  A + +G+  P+
Sbjct: 264 RMVAGGEDPEFIARRLVISASEDIGLANPN 293


>gi|17987067|ref|NP_539701.1| recombination factor protein RarA [Brucella melitensis bv. 1 str.
           16M]
 gi|17982724|gb|AAL51965.1| atpase associated with chromosome architecture/replication
           [Brucella melitensis bv. 1 str. 16M]
          Length = 457

 Score =  146 bits (369), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 79/346 (22%), Positives = 127/346 (36%), Gaps = 56/346 (16%)

Query: 1   MMDREGLL-SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M D        N  +       LRP+ L E TGQ        V        + +L  ++F
Sbjct: 21  MSDLFSTAADPNADRNRPLADRLRPKHLSEVTGQEHLTGPEGVLTRMI--ASGSLGSMVF 78

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDE 113
            GPPG GKTT+A+++A E  + F   S  + +   DL  +            + +LF+DE
Sbjct: 79  WGPPGTGKTTVARLLAGETDLAFEQISA-IFSGVADLKRVFEAARARRMSGRQTLLFVDE 137

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++   P MED  + L+    E PS       LSR                  
Sbjct: 138 IHRFNRAQQDSFLPVMEDGTVILIGATTENPSFELNAALLSR------------------ 179

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTG--LAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
                 +  + ++ E + T+++R  +  G  L + DEA   +   + G  R A  L   V
Sbjct: 180 ---ARVLTFHPHDSESIATLLKRAEEQEGQALPLDDEARASLIRMADGDGRAALTLAEEV 236

Query: 230 RDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGL 289
                         E+ DAA L+  + +             I      G   +  ISA  
Sbjct: 237 WRA-------VRPGEVFDAAKLQDVVQRRA----------PIYDKSQDGHYNL--ISALH 277

Query: 290 SEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
              R +  D    Y+ +       P   GR L+ ++ + +G+  P 
Sbjct: 278 KSVRGSDPDAALYYLSRMFDAGEDPLYIGRRLVRMSVEDIGLADPQ 323


>gi|86357338|ref|YP_469230.1| recombination factor protein RarA [Rhizobium etli CFN 42]
 gi|86281440|gb|ABC90503.1| putative ATPase associated with chromosome architecture/replication
           protein [Rhizobium etli CFN 42]
          Length = 438

 Score =  146 bits (369), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 74/336 (22%), Positives = 125/336 (37%), Gaps = 51/336 (15%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           +   V+        LRP+TL + TGQ        V     +  + +L  ++F GPPG GK
Sbjct: 10  VPEEVAARRPLADRLRPKTLADVTGQEHLTGEDGVLKRMIE--SGSLGSMIFWGPPGTGK 67

Query: 68  TTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           TT+A++++ E G+ F   S        + K  + A +      + +LF+DEIHR +   +
Sbjct: 68  TTVARLLSGEAGLAFEQISAIFSGVADLKKVFEAARMRRMDGRQTLLFVDEIHRFNRAQQ 127

Query: 123 EILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +   P MED  + L+    E PS       LSR  ++   +                   
Sbjct: 128 DSFLPVMEDGTVILVGATTENPSFELNAALLSRARVLTFKS------------------- 168

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
             ++ E L+ ++ R   +    +        ++      R+A    R V   AE      
Sbjct: 169 --HDEESLEELLTRAEAIEQRPLPLTGEARASL-----IRMADGDGRAVLTLAE------ 215

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVG-IETISAGLSEPRDAIEDL 299
              E+  AA    + D         R +   A  +     G    ISA     R +  D 
Sbjct: 216 ---EVWRAAREGESFDTEALT----RIVQRRAPVYDKAQDGHYNLISALHKSVRGSDPDA 268

Query: 300 IEPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
              Y+ +       P   GR L+ +A + +G+  P 
Sbjct: 269 ALYYLARMFDAGEDPLYLGRRLVRMAVEDIGLADPQ 304


>gi|254432154|ref|ZP_05045857.1| ATPase [Cyanobium sp. PCC 7001]
 gi|197626607|gb|EDY39166.1| ATPase [Cyanobium sp. PCC 7001]
          Length = 753

 Score =  146 bits (369), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 78/333 (23%), Positives = 126/333 (37%), Gaps = 53/333 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRPRTL++F GQ       ++   A  A  + + +++  GPPG GKTTLA+++A 
Sbjct: 18  PLADRLRPRTLDDFVGQEGILGPGRLLRRAIAA--DRVGNLILHGPPGTGKTTLARIIAG 75

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAM 129
               +F S +  V+A   DL   +            R +LFIDE+HR +   ++ L P +
Sbjct: 76  TTRAHFTSLNA-VLAGVKDLRTAVDEARGRLEQHGLRTLLFIDEVHRFNAAQQDALLPWV 134

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E+  + L+    E P     K  +SR  L                           E   
Sbjct: 135 ENGTVTLIGATTENPFFEVNKALVSRSRLFRL---------------------QPLEPIH 173

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           L  ++QR         +DEAA    +R + TP  A  L+                    +
Sbjct: 174 LHQLLQRAL-------SDEAAGYGRIRVQLTPEAADHLVDVAS------GDARSLLNALE 220

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIAR-----NFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            A+   A D  G  ++DL       +         G    +TISA +   R +  D    
Sbjct: 221 LAVETTAADAEGVVRIDLAIAEESIQQRAVLYDKQGDAHFDTISAFIKSLRGSDPDAALF 280

Query: 303 YMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           ++ +       PR   R ++  A + +G+  P 
Sbjct: 281 WLARMVEAGENPRFIFRRMLIAAGEDIGLADPQ 313


>gi|258511998|ref|YP_003185432.1| AAA ATPase central domain-containing protein [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478724|gb|ACV59043.1| AAA ATPase central domain protein [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 447

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 82/349 (23%), Positives = 136/349 (38%), Gaps = 53/349 (15%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD   L S + ++ +A ++  +RPR+L+E  G         +     +   + L  ++  
Sbjct: 1   MDLFSLASEHEAEREAPLAYRMRPRSLDEMVGHENLVGRDGILRRMIER--DRLMSIILY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDE 113
           GPPG GKTT+A+V+AR+    F   +  V +   D+   +    +       R V+F+DE
Sbjct: 59  GPPGTGKTTIAEVIARQTKARFIPLNA-VTSGIADVRKAVETAREERDLYARRTVVFLDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++ L P +E   L L+    E P        LSR       + V  L     
Sbjct: 118 IHRFNKSQQDALLPHVEAGLLSLVGATTENPYFDVNAALLSR-------SHVFRLEPLSP 170

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
           D  G  + +   + E       RG     + +  +A   + +++RG  R A  LL     
Sbjct: 171 DDIGRLVDMAIADEE-------RGLGRMRVRLHPDARRVLTLQARGDARRALNLLELAAF 223

Query: 232 FAEV--AHAKTITREIADAALLRLA---IDKMGFDQLDLRYLTMIARNFGGGPVGIETIS 286
            A V    A  I     +AAL        D+ G D  D                   TIS
Sbjct: 224 AARVGPDGATEIGMREVEAALEASGGPRYDRAGDDHYD-------------------TIS 264

Query: 287 AGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           A +   R +  +    ++ +       P    R LM +A + +G+  P+
Sbjct: 265 AFIKSVRGSDVNAAMLWLAKMLEGGEDPAFIARRLMILAAEDVGMADPN 313


>gi|218899568|ref|YP_002447979.1| ATPase, AAA family [Bacillus cereus G9842]
 gi|228902927|ref|ZP_04067068.1| hypothetical protein bthur0014_40950 [Bacillus thuringiensis IBL
           4222]
 gi|218540581|gb|ACK92975.1| ATPase, AAA family [Bacillus cereus G9842]
 gi|228856711|gb|EEN01230.1| hypothetical protein bthur0014_40950 [Bacillus thuringiensis IBL
           4222]
          Length = 428

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 76/327 (23%), Positives = 124/327 (37%), Gaps = 43/327 (13%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           +      +RP  ++E  GQ       K+     +A       ++  GPPG GKT++A  +
Sbjct: 2   KQPLAHRMRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           A   G  FR  +  V     D+  ++   +     VL +DE+HRL    ++ L P +E  
Sbjct: 60  AGSTGTPFRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESG 118

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
            L L+      P         SR        ++  L    +D   I ++    + E    
Sbjct: 119 LLTLIGATTSNPFHAINSAIRSRC-------QIFELHALTEDDILIGLKRALEDKE---- 167

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR--DFAEVAHAKTITREIADA 248
              +G     + +TDEA       S G  R A   L       F     A  IT EIA+ 
Sbjct: 168 ---KGLGEYAVTITDEALHHFTNASGGDMRSAYNALELAVLSSFTTDDQAAEITLEIAEE 224

Query: 249 ALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
            L + +   DK G    D+  L+   ++  G  V              A+  L    +I+
Sbjct: 225 CLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDV------------NAALHYLAR--LIE 268

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            G +Q    GR L+ +A++ +G+  P 
Sbjct: 269 AGDLQSI--GRRLLIMAYEDIGLASPQ 293


>gi|328351596|emb|CCA37995.1| Uncharacterized AAA domain-containing protein C26H5.02c [Pichia
           pastoris CBS 7435]
          Length = 863

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 69/340 (20%), Positives = 118/340 (34%), Gaps = 52/340 (15%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           +S +      LRP+TLEE+ GQ         L+ FIE      + +  ++  GPPG+GKT
Sbjct: 428 MSAKLPLAERLRPKTLEEYVGQSHLVGPTGVLRGFIE-----HDRVPSMILWGPPGVGKT 482

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIV 121
           +LA+++A          S    +   +   +           + R VLF DEIHR +   
Sbjct: 483 SLARIIAASTHNRCVELSA-TSSGISECRKVFEEARNEMRLTKRRTVLFCDEIHRFNKSQ 541

Query: 122 EEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           ++   P +E   + L+    E PS +     LSR                          
Sbjct: 542 QDAFLPYVERGDIILIGATTENPSFQLNSALLSRCR---------------------VFV 580

Query: 180 LNFYEIEDLKTIVQRGA----KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
           LN  + EDL  +V R      ++  L              +    +AG   R   +  E+
Sbjct: 581 LNKLDNEDLAKVVNRSLLLVNRVRKLVYNMPVLRLTTESLQYIIGVAGGDSRTALNLVEM 640

Query: 236 AHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGG-GPVGIETISAGLSEPRD 294
             +     +   AA + +    +         L      +   G    + ISA     R 
Sbjct: 641 VDSHYQKNDDTTAASVEVDPSTL------REVLRSTHAVYDRVGDQHYDAISAFHKSVRG 694

Query: 295 AIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           +  D    Y+ +       P    R ++ +A + +G+   
Sbjct: 695 SNVDATLYYLARMLHGGEDPLYISRRMIRMASEDIGVVDD 734


>gi|229093470|ref|ZP_04224573.1| hypothetical protein bcere0021_41940 [Bacillus cereus Rock3-42]
 gi|228689941|gb|EEL43745.1| hypothetical protein bcere0021_41940 [Bacillus cereus Rock3-42]
          Length = 430

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 77/327 (23%), Positives = 124/327 (37%), Gaps = 43/327 (13%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           +      +RP  ++E  GQ       K+     +A       ++  GPPG GKT++A  +
Sbjct: 2   KQPLAHRMRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           A   G  FR  +  V     D+  ++   +     VL +DE+HRL    ++ L P +E  
Sbjct: 60  AGSTGTPFRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESG 118

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
            L L+      P         SR        ++  L    +D   I ++    + E    
Sbjct: 119 LLTLIGATTSNPFHAINSAIRSRC-------QIFELHALTEDDLLIGLKRALEDKE---- 167

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR--DFAEVAHAKTITREIADA 248
              +G     + VT EA    A  S G  R A   L       F     A  IT EIA+ 
Sbjct: 168 ---KGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEE 224

Query: 249 ALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
            L + +   DK G    D+  L+   ++  G  V              A+  L    +I+
Sbjct: 225 CLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDV------------NAALHYLAR--LIE 268

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            G +Q    GR L+ +A++ +G+  P 
Sbjct: 269 AGDLQSI--GRRLLIMAYEDIGLASPQ 293


>gi|255015227|ref|ZP_05287353.1| recombination factor protein RarA [Bacteroides sp. 2_1_7]
 gi|262381155|ref|ZP_06074293.1| recombination factor protein RarA [Bacteroides sp. 2_1_33B]
 gi|298377584|ref|ZP_06987536.1| ATPase, AAA family [Bacteroides sp. 3_1_19]
 gi|262296332|gb|EEY84262.1| recombination factor protein RarA [Bacteroides sp. 2_1_33B]
 gi|298265603|gb|EFI07264.1| ATPase, AAA family [Bacteroides sp. 3_1_19]
          Length = 423

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 73/330 (22%), Positives = 117/330 (35%), Gaps = 53/330 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP+TL+++ GQ        V  +   A    +   +  GPPG+GKTTLAQ++A 
Sbjct: 5   PLAERLRPKTLDDYIGQKHLVGQGAVLRKMIDA--GRVPSFILWGPPGVGKTTLAQIIAN 62

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAM 129
           +L   F + S  + +   D+  ++   +          +LFIDEIHR S   ++ L  A+
Sbjct: 63  KLDAPFYTLSA-ISSGVKDVREVIEKAKSNRFFNTVSPILFIDEIHRFSKSQQDSLLNAV 121

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E   + L+    E PS   ++  LSR  +    +        L                 
Sbjct: 122 ETGVVTLIGATTENPSFEVIRPLLSRCQVYVLKSLDKNDLLTL----------------- 164

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           L   +     L    +       +   S G  R    +L  V   AE +    I  E   
Sbjct: 165 LHKAIAEDVVLKDKNIRLTETDAMLRYSGGDARKLLNILELVV-SAEESDDIEILDEKVV 223

Query: 248 AALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
             L     A DK G    D+                   ISA +   R +  D    ++ 
Sbjct: 224 ERLQENPAAYDKGGEMHYDI-------------------ISAFIKSIRGSDPDGAIYWLA 264

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +       P    R L+  A + +G+  P+
Sbjct: 265 RMVAGGEDPEFIARRLVISASEDIGLANPN 294


>gi|254480362|ref|ZP_05093609.1| ATPase, AAA family protein [marine gamma proteobacterium HTCC2148]
 gi|214038945|gb|EEB79605.1| ATPase, AAA family protein [marine gamma proteobacterium HTCC2148]
          Length = 442

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 72/329 (21%), Positives = 117/329 (35%), Gaps = 56/329 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + LRP  L+ + GQ    +  K   E+   R   L  ++F GPPG+GKTTLA++ A 
Sbjct: 20  PLAARLRPADLQSYAGQSHLLAPGKPLRESIDRRQ--LHSMIFWGPPGVGKTTLARIAAE 77

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAME 130
               +F   S  V++   ++   +             VLF+DE+HR +   ++   P +E
Sbjct: 78  AADAHFLQISA-VLSGVKEIREAIAQARQHKSSGRDTVLFVDEVHRFNKSQQDAFLPYVE 136

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           D  +  +    E PS       LSR  +    +                      EI +L
Sbjct: 137 DGTVIFVGATTENPSFELNNALLSRTRVYKLRS---------------------LEISEL 175

Query: 189 KTIVQRGAKLTGLAVTD--EAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             +++RG    G A          IA ++ G  R +  LL    D A+       T E  
Sbjct: 176 VGVLKRGMDELGDAAQASQHCLELIATQADGDARRSINLLELAADLADDGEITEQTLEEV 235

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
             A                     + R   GG +  + ISA     R +  D    +  +
Sbjct: 236 LQA--------------------SLRRFDKGGDLFYDQISALHKAVRGSSADGALYWFCR 275

Query: 307 QGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                  P    R ++ +A + +G   P 
Sbjct: 276 MLDGGCDPLYIARRVVRMASEDVGNADPR 304


>gi|206976016|ref|ZP_03236926.1| ATPase, AAA family [Bacillus cereus H3081.97]
 gi|206745768|gb|EDZ57165.1| ATPase, AAA family [Bacillus cereus H3081.97]
          Length = 428

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 77/327 (23%), Positives = 124/327 (37%), Gaps = 43/327 (13%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           +      +RP  ++E  GQ       K+     +A       ++  GPPG GKT++A  +
Sbjct: 2   KQPLAHRMRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           A   G  FR  +  V     D+  ++   +     VL +DE+HRL    ++ L P +E  
Sbjct: 60  AGSTGTPFRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESG 118

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
            L L+      P         SR        ++  L    +D   I ++    + E    
Sbjct: 119 LLTLIGATTSNPFHAINSAIRSRC-------QIFELHALTEDDLLIGLKRALEDKE---- 167

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR--DFAEVAHAKTITREIADA 248
              +G     + VT EA    A  S G  R A   L       F     A  IT EIA+ 
Sbjct: 168 ---KGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEE 224

Query: 249 ALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
            L + +   DK G    D+  L+   ++  G  V              A+  L    +I+
Sbjct: 225 CLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDV------------NAALHYLAR--LIE 268

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            G +Q    GR L+ +A++ +G+  P 
Sbjct: 269 AGDLQSI--GRRLLIMAYEDIGLASPQ 293


>gi|163739476|ref|ZP_02146886.1| AAA ATPase, central region [Phaeobacter gallaeciensis BS107]
 gi|161387229|gb|EDQ11588.1| AAA ATPase, central region [Phaeobacter gallaeciensis BS107]
          Length = 440

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 76/338 (22%), Positives = 123/338 (36%), Gaps = 58/338 (17%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
                        LRP++L E  GQ +               + +L  ++F GPPG+GKT
Sbjct: 15  DPQSEVNRPLADRLRPQSLAEVIGQAQVLGEDAPL--GVMLASGSLSSLIFWGPPGVGKT 72

Query: 69  TLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           T+A+++ARE  ++F   S      P + K  + A +        +LF+DEIHR +   ++
Sbjct: 73  TIARLLARETDLHFVQISAIFTGVPDLKKVFEAAKIRRQNGQGTLLFVDEIHRFNKAQQD 132

Query: 124 ILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
              P MED  + L+    E PS       LSR  ++                        
Sbjct: 133 GFLPHMEDGTILLVGATTENPSFELNAAVLSRAQVLVL---------------------E 171

Query: 182 FYEIEDLKTIVQRGAKLTG--LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
              + DL+ + QR  +     L +T +A   +   + G  R    L+ +V   A      
Sbjct: 172 RLSLADLERLTQRAEQELDRALPLTADARDALQEMADGDGRALLNLIEQV---AAWKVDS 228

Query: 240 TITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
            + RE     L+R A   DK G +  +L                   ISA     R +  
Sbjct: 229 PLGREALATRLMRRAAKYDKSGDEHYNL-------------------ISALHKSVRGSDP 269

Query: 298 DLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           D    +  +       PR   R L  +A + + +  P 
Sbjct: 270 DAALYWFARMLEGGEDPRYLARRLARMAVEDIALADPQ 307


>gi|217961889|ref|YP_002340459.1| recombination factor protein RarA [Bacillus cereus AH187]
 gi|229141136|ref|ZP_04269678.1| hypothetical protein bcere0013_42300 [Bacillus cereus BDRD-ST26]
 gi|217063641|gb|ACJ77891.1| ATPase, AAA family [Bacillus cereus AH187]
 gi|228642414|gb|EEK98703.1| hypothetical protein bcere0013_42300 [Bacillus cereus BDRD-ST26]
          Length = 428

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 77/327 (23%), Positives = 123/327 (37%), Gaps = 43/327 (13%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           +      +RP  ++E  GQ       K+     +A       ++  GPPG GKT++A  +
Sbjct: 2   KQPLAHRMRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           A   G  FR  +  V     D+  ++   +     VL +DE+HRL    ++ L P +E  
Sbjct: 60  AGSTGTPFRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESG 118

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
            L L+      P         SR        ++  L    +D   I ++    + E    
Sbjct: 119 LLTLIGATTSNPFHAINSAIRSRC-------QIFELHALTEDDLLIGLKRALEDKE---- 167

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR--DFAEVAHAKTITREIADA 248
              +G     + VT EA    A  S G  R A   L       F     A  IT EIA+ 
Sbjct: 168 ---KGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEE 224

Query: 249 ALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
            L +     DK G    D+  L+   ++  G  V              A+  L    +I+
Sbjct: 225 CLQKKRFVHDKGGDAHYDV--LSAFQKSVRGSDV------------NAALHYLAR--LIE 268

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            G +Q    GR L+ +A++ +G+  P 
Sbjct: 269 AGDLQSI--GRRLLIMAYEDIGLASPQ 293


>gi|42783528|ref|NP_980775.1| recombination factor protein RarA [Bacillus cereus ATCC 10987]
 gi|42739457|gb|AAS43383.1| ATPase, AAA family [Bacillus cereus ATCC 10987]
          Length = 428

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 77/327 (23%), Positives = 124/327 (37%), Gaps = 43/327 (13%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           +      +RP  ++E  GQ       K+     +A       ++  GPPG GKT++A  +
Sbjct: 2   KQPLAHRMRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           A   G  FR  +  V     D+  ++   +     VL +DE+HRL    ++ L P +E  
Sbjct: 60  AGSTGTPFRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESG 118

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
            L L+      P         SR        ++  L    +D   I ++    + E    
Sbjct: 119 LLTLIGATTSNPFHAINSAIRSRC-------QIFELHALTEDDLLIGLKRALEDKE---- 167

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR--DFAEVAHAKTITREIADA 248
              +G     + VT EA    A  S G  R A   L       F     A  IT EIA+ 
Sbjct: 168 ---KGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEE 224

Query: 249 ALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
            L + +   DK G    D+  L+   ++  G  V              A+  L    +I+
Sbjct: 225 CLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDV------------NAALHYLAR--LIE 268

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            G +Q    GR L+ +A++ +G+  P 
Sbjct: 269 AGDLQSI--GRRLLIMAYEDIGLASPQ 293


>gi|331697349|ref|YP_004333588.1| AAA ATPase central domain-containing protein [Pseudonocardia
           dioxanivorans CB1190]
 gi|326952038|gb|AEA25735.1| AAA ATPase central domain protein [Pseudonocardia dioxanivorans
           CB1190]
          Length = 456

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 77/335 (22%), Positives = 117/335 (34%), Gaps = 47/335 (14%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
             V +       +RPR+L+E  GQ              +    A   VL  GPPG GKTT
Sbjct: 22  PQVREGAPLAVRMRPRSLDEVVGQRHLLGPGAPLRRLLE--GGAPASVLLYGPPGTGKTT 79

Query: 70  LAQVVARE-LGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIV 121
           LA+++AR   G         + A   +L A++ +   R        VLFIDE+HR S   
Sbjct: 80  LARLMARSGGGSRHFVALSALSAGVKELRAVIEDARRRLDRDGRSTVLFIDEVHRFSKTQ 139

Query: 122 EEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           ++ L  A+ED  + L+    E PS   V   LSR  ++   +        L  R  +   
Sbjct: 140 QDALLGAVEDRLVLLVAATTENPSFSVVSPLLSRSLILQLRSLEPDELRALLRRAVVDG- 198

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
                         RG     + + D+    +   + G  R A   L    D    A   
Sbjct: 199 --------------RGLGG-SVELADDGEDALVRLAAGDARRALTALEAAADGVRSAGG- 242

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
                             +G   ++     +  R    G    + ISA +   R +  D 
Sbjct: 243 ----------------HSIGLADVERAVTEVAVRYDRAGDQHYDVISAFIKSIRGSDPDA 286

Query: 300 IEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
              Y+ +       PR   R LM  A + +G+  P
Sbjct: 287 ALHYLARMIVAGEDPRFIARRLMIHASEDIGLADP 321


>gi|297616541|ref|YP_003701700.1| ATPase AAA [Syntrophothermus lipocalidus DSM 12680]
 gi|297144378|gb|ADI01135.1| AAA ATPase central domain protein [Syntrophothermus lipocalidus DSM
           12680]
          Length = 429

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 73/343 (21%), Positives = 131/343 (38%), Gaps = 43/343 (12%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD     S+N  Q  + ++  +RP+ L+E  GQ              +   + L  ++  
Sbjct: 1   MDLFSYQSQNQPQAWSPLAFRMRPKDLDEIEGQAHLVGPGAPLRRMIER--DQLHSMILY 58

Query: 61  GPPGLGKTTLAQVVAR------ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEI 114
           GPPG GKTTL  ++A+      E      +T+  +   AG+    L     R +LF+DEI
Sbjct: 59  GPPGTGKTTLGNIIAKKTRSHFEYLKAVSTTTADIRQLAGEAGQRLKFYGQRTILFLDEI 118

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++ L P +E+    L+    E P        LSR  +         +  PL +
Sbjct: 119 HRFNKAQQDALLPMVEEGIFILIGATTENPLYEINSALLSRTHI--------YVLEPLDE 170

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           +    I L     +      +RG    G+ +T+EA   + + ++G  R A  L+  +   
Sbjct: 171 QAIERILLRALNDK------ERGLGKYGIEITEEALKSVVIAAKGDARTALNLVENLF-L 223

Query: 233 AEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEP 292
           A+    + +     + A            ++  +    +           +TISA +   
Sbjct: 224 AKYREGERLLITPQEVA------------EVHRK---TVINYDKKADHHYDTISAFIKSI 268

Query: 293 RDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           R +  D    ++         PR   R L+  A + +G+  P 
Sbjct: 269 RGSDPDATLFWLAVMLEGGEDPRFIARRLVIHAAEDIGLADPQ 311


>gi|150007159|ref|YP_001301902.1| recombination factor protein RarA [Parabacteroides distasonis ATCC
           8503]
 gi|149935583|gb|ABR42280.1| putative AAA family ATPase protein [Parabacteroides distasonis ATCC
           8503]
          Length = 422

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 73/330 (22%), Positives = 117/330 (35%), Gaps = 53/330 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP+TL+++ GQ        V  +   A    +   +  GPPG+GKTTLAQ++A 
Sbjct: 4   PLAERLRPKTLDDYIGQKHLVGQGAVLRKMIDA--GRVPSFILWGPPGVGKTTLAQIIAN 61

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAM 129
           +L   F + S  + +   D+  ++   +          +LFIDEIHR S   ++ L  A+
Sbjct: 62  KLDAPFYTLSA-ISSGVKDVREVIEKAKSNRFFNTVSPILFIDEIHRFSKSQQDSLLNAV 120

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E   + L+    E PS   ++  LSR  +    +        L                 
Sbjct: 121 ETGVVTLIGATTENPSFEVIRPLLSRCQVYVLKSLDKNDLLTL----------------- 163

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           L   +     L    +       +   S G  R    +L  V   AE +    I  E   
Sbjct: 164 LYKAIAEDVVLKDKNIRLTETDAMLRYSGGDARKLLNILELVV-SAEESDDIEILDEKVV 222

Query: 248 AALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
             L     A DK G    D+                   ISA +   R +  D    ++ 
Sbjct: 223 ERLQENPAAYDKGGEMHYDI-------------------ISAFIKSIRGSDPDGAIYWLA 263

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +       P    R L+  A + +G+  P+
Sbjct: 264 RMVAGGEDPEFIARRLVISASEDIGLANPN 293


>gi|30022475|ref|NP_834106.1| recombination factor protein RarA [Bacillus cereus ATCC 14579]
 gi|218235142|ref|YP_002369209.1| recombination factor protein RarA [Bacillus cereus B4264]
 gi|229129680|ref|ZP_04258648.1| hypothetical protein bcere0015_41220 [Bacillus cereus BDRD-Cer4]
 gi|29898033|gb|AAP11307.1| ATPase, AAA family [Bacillus cereus ATCC 14579]
 gi|218163099|gb|ACK63091.1| ATPase, AAA family [Bacillus cereus B4264]
 gi|228653797|gb|EEL09667.1| hypothetical protein bcere0015_41220 [Bacillus cereus BDRD-Cer4]
          Length = 428

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 76/327 (23%), Positives = 123/327 (37%), Gaps = 43/327 (13%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           +      +RP  ++E  GQ       K+     +A       ++  GPPG GKT++A  +
Sbjct: 2   KQPLAHRMRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           A   G  FR  +  V     D+  ++   +     VL +DE+HRL    ++ L P +E  
Sbjct: 60  AGSTGTPFRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESG 118

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
            L L+      P         SR  +           + L +   +       E +    
Sbjct: 119 LLTLIGATTSNPFHAINSAIRSRCQIFEL--------HALTEEDILIGLKRALEDK---- 166

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR--DFAEVAHAKTITREIADA 248
             ++G     + VTDEA    A  S G  R A   L       F     A  IT EIA+ 
Sbjct: 167 --EKGLGEYAVTVTDEALHHFANASGGDMRSAYNALELAVLSSFTTDDQAAEITLEIAEE 224

Query: 249 ALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
            L + +   DK G    D+  L+   ++  G  V              A+  L    +I+
Sbjct: 225 CLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDV------------NAALHYLAR--LIE 268

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            G +Q    GR L+ +A++ +G+  P 
Sbjct: 269 AGDLQSI--GRRLLIMAYEDIGLASPQ 293


>gi|162382774|ref|YP_896708.2| recombination factor protein RarA [Bacillus thuringiensis str. Al
           Hakam]
 gi|196044812|ref|ZP_03112046.1| ATPase, AAA family [Bacillus cereus 03BB108]
 gi|225866381|ref|YP_002751759.1| ATPase, AAA family [Bacillus cereus 03BB102]
 gi|196024300|gb|EDX62973.1| ATPase, AAA family [Bacillus cereus 03BB108]
 gi|225786800|gb|ACO27017.1| ATPase, AAA family [Bacillus cereus 03BB102]
          Length = 426

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 77/327 (23%), Positives = 124/327 (37%), Gaps = 43/327 (13%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           +      +RP  ++E  GQ       K+     +A       ++  GPPG GKT++A  +
Sbjct: 2   KQPLAHRMRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           A   G  FR  +  V     D+  ++   +     VL +DE+HRL    ++ L P +E  
Sbjct: 60  AGSTGTPFRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESG 118

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
            L L+      P         SR        ++  L    +D   I ++    + E    
Sbjct: 119 LLTLIGATTSNPFHAINSAIRSRC-------QIFELHALTEDDLLIGLKRALEDKE---- 167

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR--DFAEVAHAKTITREIADA 248
              +G     + VT EA    A  S G  R A   L       F     A  IT EIA+ 
Sbjct: 168 ---KGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEE 224

Query: 249 ALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
            L + +   DK G    D+  L+   ++  G  V              A+  L    +I+
Sbjct: 225 CLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDV------------NAALHYLAR--LIE 268

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            G +Q    GR L+ +A++ +G+  P 
Sbjct: 269 AGDLQSI--GRRLLIMAYEDIGLASPQ 293


>gi|222085712|ref|YP_002544242.1| ATPase associated with chromosome architecture/replication protein
           [Agrobacterium radiobacter K84]
 gi|221723160|gb|ACM26316.1| ATPase associated with chromosome architecture/replication protein
           [Agrobacterium radiobacter K84]
          Length = 438

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 77/336 (22%), Positives = 124/336 (36%), Gaps = 51/336 (15%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           +   V+ +      LRP+TL + TGQ              +  + +L  ++F GPPG GK
Sbjct: 10  IPEGVASKRPLADRLRPQTLADVTGQSHLTGEDGALRRMIE--SGSLGSMIFWGPPGTGK 67

Query: 68  TTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           TT+A++++ E G+ F   S        + K  + A L      + +LF+DEIHR +   +
Sbjct: 68  TTVARLLSGEAGLAFEQISAIFSGVADLKKVFETARLRRMDGRQTLLFVDEIHRFNRAQQ 127

Query: 123 EILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +   P MED  + L+    E PS       LSR  ++   +                   
Sbjct: 128 DSFLPVMEDGTVILVGATTENPSFELNAALLSRARVLTFRS------------------- 168

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
             ++ E L  ++ R  K            E A  S    R+A    R V   AE      
Sbjct: 169 --HDEESLAELLSRAEK---TEGKPLPLTEDARASLI--RMADGDGRSVLTLAE------ 215

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVG-IETISAGLSEPRDAIEDL 299
              E+  AA      D        ++ +   A  +     G    ISA     R +  D 
Sbjct: 216 ---EVWRAARKDELFDPDAL----VKIVQRRAPVYDKAQDGHYNLISALHKSVRGSDPDA 268

Query: 300 IEPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
              Y+ +       P   GR L+ +A + +G+  P 
Sbjct: 269 ALYYLARMFDAGEDPLYLGRRLVRMAVEDIGLADPQ 304


>gi|228993137|ref|ZP_04153059.1| hypothetical protein bpmyx0001_38730 [Bacillus pseudomycoides DSM
           12442]
 gi|228766596|gb|EEM15237.1| hypothetical protein bpmyx0001_38730 [Bacillus pseudomycoides DSM
           12442]
          Length = 420

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 76/320 (23%), Positives = 123/320 (38%), Gaps = 43/320 (13%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  ++E  GQ       K+     +A       ++  GPPG GKT++A  +A   G  
Sbjct: 1   MRPTNIKEIIGQEHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAIAGSTGTP 58

Query: 82  FRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137
           FR  +  V     D+  ++   +     VL +DE+HRL    ++ L P +E   L L+  
Sbjct: 59  FRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLLTLIGA 117

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
               P         SR  +           + L +   +       E +      ++G  
Sbjct: 118 TTSNPFHAINSAIRSRCQIFEL--------HALTENDILIGLKRALEDK------EKGLG 163

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR--DFAEVAHAKTITREIADAALLRLA- 254
              + VTDEA C  A  S G  R A   L       F     +  IT EIA+  L + + 
Sbjct: 164 EYHVTVTDEAMCHFANASGGDMRSAYNALELAVLSSFTTDDQSTEITLEIAEECLQKKSF 223

Query: 255 -IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
             DK G    D+  L+   ++  G  V              A+  L    +I+ G +Q  
Sbjct: 224 VHDKGGDAHYDV--LSAFQKSVRGSDV------------NAALHYLAR--LIEAGDLQSI 267

Query: 314 PRGRLLMPIAWQHLGIDIPH 333
             GR L+ +A++ +G+  P 
Sbjct: 268 --GRRLLIMAYEDIGLASPQ 285


>gi|30264469|ref|NP_846846.1| recombination factor protein RarA [Bacillus anthracis str. Ames]
 gi|47529927|ref|YP_021276.1| recombination factor protein RarA [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49187290|ref|YP_030542.1| recombination factor protein RarA [Bacillus anthracis str. Sterne]
 gi|65321766|ref|ZP_00394725.1| COG2256: ATPase related to the helicase subunit of the Holliday
           junction resolvase [Bacillus anthracis str. A2012]
 gi|167636495|ref|ZP_02394792.1| ATPase, AAA family [Bacillus anthracis str. A0442]
 gi|167638625|ref|ZP_02396901.1| ATPase, AAA family [Bacillus anthracis str. A0193]
 gi|170689631|ref|ZP_02880813.1| ATPase, AAA family [Bacillus anthracis str. A0465]
 gi|177653256|ref|ZP_02935508.1| ATPase, AAA family [Bacillus anthracis str. A0174]
 gi|190566921|ref|ZP_03019837.1| ATPase, AAA family [Bacillus anthracis Tsiankovskii-I]
 gi|227817178|ref|YP_002817187.1| ATPase, AAA family [Bacillus anthracis str. CDC 684]
 gi|229603735|ref|YP_002868686.1| ATPase, AAA family [Bacillus anthracis str. A0248]
 gi|254684155|ref|ZP_05148015.1| recombination factor protein RarA [Bacillus anthracis str.
           CNEVA-9066]
 gi|254724674|ref|ZP_05186457.1| recombination factor protein RarA [Bacillus anthracis str. A1055]
 gi|254736502|ref|ZP_05194208.1| recombination factor protein RarA [Bacillus anthracis str. Western
           North America USA6153]
 gi|254741540|ref|ZP_05199227.1| recombination factor protein RarA [Bacillus anthracis str. Kruger
           B]
 gi|254751361|ref|ZP_05203398.1| recombination factor protein RarA [Bacillus anthracis str. Vollum]
 gi|254757693|ref|ZP_05209720.1| recombination factor protein RarA [Bacillus anthracis str.
           Australia 94]
 gi|30259127|gb|AAP28332.1| ATPase, AAA family [Bacillus anthracis str. Ames]
 gi|47505075|gb|AAT33751.1| ATPase, AAA family [Bacillus anthracis str. 'Ames Ancestor']
 gi|49181217|gb|AAT56593.1| ATPase, AAA family [Bacillus anthracis str. Sterne]
 gi|167513473|gb|EDR88843.1| ATPase, AAA family [Bacillus anthracis str. A0193]
 gi|167528088|gb|EDR90885.1| ATPase, AAA family [Bacillus anthracis str. A0442]
 gi|170666401|gb|EDT17182.1| ATPase, AAA family [Bacillus anthracis str. A0465]
 gi|172081538|gb|EDT66610.1| ATPase, AAA family [Bacillus anthracis str. A0174]
 gi|190561912|gb|EDV15881.1| ATPase, AAA family [Bacillus anthracis Tsiankovskii-I]
 gi|227006926|gb|ACP16669.1| ATPase, AAA family [Bacillus anthracis str. CDC 684]
 gi|229268143|gb|ACQ49780.1| ATPase, AAA family [Bacillus anthracis str. A0248]
          Length = 428

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 75/327 (22%), Positives = 122/327 (37%), Gaps = 43/327 (13%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           +      +RP  ++E  GQ       K+     +A       ++  GPPG GKT++A  +
Sbjct: 2   KQPLAHRMRPTNIQEVIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           A   G  FR  +  V     D+  ++   +     VL +DE+HRL    ++ L P +E  
Sbjct: 60  AGSTGTPFRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESG 118

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
            L L+      P         SR  +           + L +   +       E +    
Sbjct: 119 LLTLIGATTSNPFHAINSAIRSRCQIFEL--------HALTEEDLLIGLKRALEDK---- 166

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR--DFAEVAHAKTITREIADA 248
             ++G     + VT EA    A  S G  R A   L       F     A  IT EIA+ 
Sbjct: 167 --EKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEE 224

Query: 249 ALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
            L + +   DK G    D+  L+   ++  G  V              A+  L    +I+
Sbjct: 225 CLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDV------------NAALHYLAR--LIE 268

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            G +Q    GR L+ +A++ +G+  P 
Sbjct: 269 AGDLQSI--GRRLLIMAYEDIGLASPQ 293


>gi|229163348|ref|ZP_04291300.1| hypothetical protein bcere0009_41140 [Bacillus cereus R309803]
 gi|228620129|gb|EEK77003.1| hypothetical protein bcere0009_41140 [Bacillus cereus R309803]
          Length = 428

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 78/327 (23%), Positives = 125/327 (38%), Gaps = 43/327 (13%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           +      +RP  ++E  GQ       K+     +A       ++  GPPG GKT++A  +
Sbjct: 2   KQPLAHRMRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           A   G  FR  +  V     D+  ++   +     VL +DE+HRL    ++ L P +E  
Sbjct: 60  AGSTGTPFRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESG 118

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
            L L+      P         SR        ++  L    +D   I ++L   + E    
Sbjct: 119 LLTLIGATTSNPFHAINSAIRSRC-------QIFELHALTEDDLLIGLKLALEDKE---- 167

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR--DFAEVAHAKTITREIADA 248
              +G     + VT EA    A  S G  R A   L       F     A  IT EIA+ 
Sbjct: 168 ---KGLGEYNVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEE 224

Query: 249 ALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
            L + +   DK G    D+  L+   ++  G  V              A+  L    +I+
Sbjct: 225 CLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDV------------NAALHYLAR--LIE 268

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            G +Q    GR L+ +A++ +G+  P 
Sbjct: 269 AGDLQSI--GRRLLIMAYEDVGLASPQ 293


>gi|227514495|ref|ZP_03944544.1| crossover junction endodeoxyribonuclease [Lactobacillus fermentum
           ATCC 14931]
 gi|227087181|gb|EEI22493.1| crossover junction endodeoxyribonuclease [Lactobacillus fermentum
           ATCC 14931]
          Length = 430

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 71/324 (21%), Positives = 117/324 (36%), Gaps = 41/324 (12%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +     +RPRTL+E  GQ       K+     +AR   L  ++  GPPG GKT++A  +A
Sbjct: 3   EPLAFRMRPRTLDEVVGQQHLIGPGKIIWRMVEAR--MLSSMILYGPPGTGKTSIASAIA 60

Query: 76  RELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
                 FR+ +    +K    + A    +    +L +DEIHRL    ++ L P +E  ++
Sbjct: 61  GSTKYAFRTLNAATDSKKDLQVVAEEAKMSGTVILLLDEIHRLDKAKQDFLLPHLESGRI 120

Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            L+    E P         SR  +               DR                   
Sbjct: 121 VLIGATTENPYIAINPAIRSRAQIFEVKPLTAAEVGLAIDR--------------ALKDP 166

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI--TREIADAAL 250
           QRG     L + D+A  ++   + G  R A   L         A    I  T  + + ++
Sbjct: 167 QRGLGKLPLVLDDDARTQLITATNGDLRSALNGLELAARSTAPASDGQIYLTLSVIEESV 226

Query: 251 LRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            + ++  DK G    D      +   F     G +T +A                +I  G
Sbjct: 227 QKRSLVADKDGDGHYD------VISAFQKSIRGSDTDAALH----------YLAQLIAAG 270

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIP 332
            +      R L+ IA++ +G+  P
Sbjct: 271 DLVSI--ARRLVVIAYEDIGLANP 292


>gi|184154931|ref|YP_001843271.1| recombination factor protein RarA [Lactobacillus fermentum IFO
           3956]
 gi|183226275|dbj|BAG26791.1| ATPase [Lactobacillus fermentum IFO 3956]
 gi|299782966|gb|ADJ40964.1| ATPase [Lactobacillus fermentum CECT 5716]
          Length = 430

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 71/324 (21%), Positives = 117/324 (36%), Gaps = 41/324 (12%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +     +RPRTL+E  GQ       K+     +AR   L  ++  GPPG GKT++A  +A
Sbjct: 3   EPLAFRMRPRTLDEVVGQQHLIGPGKIIWRMVEAR--MLSSMILYGPPGTGKTSIASAIA 60

Query: 76  RELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
                 FR+ +    +K    + A    +    +L +DEIHRL    ++ L P +E  ++
Sbjct: 61  GSTKYAFRTLNAATDSKKDLQVVAEEAKMSGTVILLLDEIHRLDKAKQDFLLPHLESGRI 120

Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            L+    E P         SR  +               DR                   
Sbjct: 121 VLIGATTENPYIAINPAIRSRAQIFEVKPLTAAEVGLAIDR--------------ALKDP 166

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI--TREIADAAL 250
           QRG     L + D+A  ++   + G  R A   L         A    I  T  + + ++
Sbjct: 167 QRGLGKLPLVLDDDARTQLITATNGDLRSALNGLELAARSTAPASDGQIYLTLSVIEESV 226

Query: 251 LRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            + ++  DK G    D      +   F     G +T +A                +I  G
Sbjct: 227 QKRSLVADKDGDGHYD------VISAFQKSIRGSDTDAALH----------YLAQLIAAG 270

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIP 332
            +      R L+ IA++ +G+  P
Sbjct: 271 DLVSI--ARRLVVIAYEDIGLANP 292


>gi|289207843|ref|YP_003459909.1| ATPase AAA [Thioalkalivibrio sp. K90mix]
 gi|288943474|gb|ADC71173.1| AAA ATPase central domain protein [Thioalkalivibrio sp. K90mix]
          Length = 454

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 70/325 (21%), Positives = 113/325 (34%), Gaps = 49/325 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP  L+E  GQ           +A +        ++  GPPG GKTTLA++VA 
Sbjct: 34  PLAERMRPARLDEMVGQDHLVGPDAALRQAIEQGQT--PSMILWGPPGCGKTTLARLVA- 90

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAME 130
             G     T   V+A   D+ A++   + R       +LFIDEIHR +   ++ L P +E
Sbjct: 91  AAGAQRLVTLSAVLAGVKDVRAVVDAAKARRRNGVGTLLFIDEIHRFNKGQQDALLPHIE 150

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           D  L  +    E PS       LSR  +    +                        E +
Sbjct: 151 DGTLTFVGATTENPSFALNSALLSRARVYRMESV---------------------GAEAI 189

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           + ++ R        +            +   R A    RR  ++ E A       EI   
Sbjct: 190 EALIDRALSDPERGLGGRGLRLEPTERQRVARAADGDARRALNWLETASDLARDGEITAD 249

Query: 249 ALLR-LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           AL   +    + FD+               G    + ISA     R +       ++ + 
Sbjct: 250 ALRAVMGAQSLAFDRQ--------------GDAFYDQISALHKSVRGSDPGAAVYWLTRM 295

Query: 308 GFIQRTP--RGRLLMPIAWQHLGID 330
                 P   GR L+ +A++ +G+ 
Sbjct: 296 LDAGCDPDYLGRRLLRMAYEDIGLA 320


>gi|254540120|ref|NP_084491.3| ATPase WRNIP1 [Mus musculus]
 gi|73622086|sp|Q91XU0|WRIP1_MOUSE RecName: Full=ATPase WRNIP1; AltName: Full=Werner
           helicase-interacting protein 1
 gi|26334781|dbj|BAC31091.1| unnamed protein product [Mus musculus]
 gi|56206896|emb|CAI25647.1| Werner helicase interacting protein 1 [Mus musculus]
 gi|74195651|dbj|BAE39633.1| unnamed protein product [Mus musculus]
 gi|74215304|dbj|BAE41868.1| unnamed protein product [Mus musculus]
 gi|74221135|dbj|BAE42069.1| unnamed protein product [Mus musculus]
 gi|148700413|gb|EDL32360.1| Werner helicase interacting protein 1, isoform CRA_c [Mus musculus]
          Length = 660

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 67/346 (19%), Positives = 125/346 (36%), Gaps = 35/346 (10%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLG 66
           R + +       +RP TL+++ GQ  A      L+  +EA +     +  ++  GPPG G
Sbjct: 214 RQMLEGKPLADKMRPDTLQDYIGQSRAVGQETLLRSLLEANE-----IPSLILWGPPGCG 268

Query: 67  KTTLAQVVARELGVNFRST--SGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRL 117
           KTTLA ++A     +           AK  D+  ++   +        + +LFIDEIHR 
Sbjct: 269 KTTLAHIIANNSKKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRF 328

Query: 118 SIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
           +   ++   P +E   + L+    E PS +     LSR  +I            +  R  
Sbjct: 329 NKSQQDTFLPHVECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAI 388

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLA---VTDEAACEIAMRSRGTPRIAGRLLRRVR-- 230
             + ++  +       +   +  +      + D+A   +A  S G  R     L+     
Sbjct: 389 NSLGIHVLDSSRPTDPLSHSSNCSSEPSVFIEDKAVDTLAYLSDGDARTGLNGLQLAVLA 448

Query: 231 --DFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAG 288
                +V   K+         L+     K G  +  + Y      ++         ISA 
Sbjct: 449 RLSSRKVFCKKSGQTYSPSRVLITENDVKEGLQRSHILYDRAGEEHYNC-------ISAL 501

Query: 289 LSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
               R + ++    ++ +       P    R L+  A + +G+  P
Sbjct: 502 HKAMRGSDQNASLYWLARMLEGGEDPLYVARRLVRFASEDIGLADP 547


>gi|228967474|ref|ZP_04128503.1| hypothetical protein bthur0004_42720 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228792251|gb|EEM39824.1| hypothetical protein bthur0004_42720 [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 420

 Score =  146 bits (368), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 77/320 (24%), Positives = 124/320 (38%), Gaps = 43/320 (13%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  ++E  GQ       K+     +A       ++  GPPG GKT++A  +A   G  
Sbjct: 1   MRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAIAGSTGTP 58

Query: 82  FRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137
           FR  +  V     D+  ++   +     VL +DE+HRL    ++ L P +E   L L+  
Sbjct: 59  FRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLLTLIGA 117

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
               P         SR        ++  L    +D   I ++    + E       +G  
Sbjct: 118 TTSNPFHAINSAIRSRC-------QIFELHALTEDDILIGLKRALEDKE-------KGLG 163

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR--DFAEVAHAKTITREIADAALLRLA- 254
              + +TDEA    A  S G  R A   L       F     A  IT EIA+  L + + 
Sbjct: 164 EYAVTITDEALHHFANASGGDMRSAYNALELAVLSSFTTDDQAAEITLEIAEECLQKKSF 223

Query: 255 -IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
             DK G    D+  L+   ++  G  V              A+  L    +I+ G +Q  
Sbjct: 224 VHDKGGDAHYDV--LSAFQKSVRGSDV------------NAALHYLAR--LIEAGDLQSI 267

Query: 314 PRGRLLMPIAWQHLGIDIPH 333
             GR L+ +A++ +G+  P 
Sbjct: 268 --GRRLLIMAYEDIGLASPQ 285


>gi|124021978|ref|YP_001016285.1| recombination factor protein RarA/unknown domain fusion protein
           [Prochlorococcus marinus str. MIT 9303]
 gi|123962264|gb|ABM77020.1| putative ATPase, AAA family protein [Prochlorococcus marinus str.
           MIT 9303]
          Length = 735

 Score =  146 bits (368), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 79/347 (22%), Positives = 135/347 (38%), Gaps = 48/347 (13%)

Query: 2   MDREGLLSRNVSQED----ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           MD++ L +    QE          LRPRTLEEF GQ    +  ++   A  A  + + ++
Sbjct: 1   MDQD-LFTYQGDQELKRHAPLADRLRPRTLEEFVGQGSILAEGRLLRRAIAA--DRVGNL 57

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLF 110
           L  GPPG+GKTTLA+++A     NF S +  V+A   +L   +   + R        +LF
Sbjct: 58  LLHGPPGVGKTTLARIIAGHTRANFSSLNA-VLAGVKELRQEVDAAKQRLERHGLRTILF 116

Query: 111 IDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           IDE+HR +   ++ L P +E+  + L+    E P     K  +SR  L           +
Sbjct: 117 IDEVHRFNSAQQDALLPWVENGTVTLIGATTENPYFEVNKALVSRSRLFRLQALENEDLH 176

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            L              ++      +RG     + ++  AA  +   + G  R     L  
Sbjct: 177 RL--------------LKHALQDCERGYGDRQVMLSTAAANHLVNVANGDARSLLNALEL 222

Query: 229 VRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAG 288
             + +      +I   +A A        +    +  + Y          G    +TISA 
Sbjct: 223 AVESSRPNEQGSIHINLAIA--------EESIQERAVLY-------DKHGDAHFDTISAF 267

Query: 289 LSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +   R +  D    ++ +       PR   R ++  A + +G+  P 
Sbjct: 268 IKSLRGSDADAALFWLARMVEAGENPRFIFRRMLIAAGEDIGLADPQ 314


>gi|255659708|ref|ZP_05405117.1| replication-associated recombination protein A [Mitsuokella
           multacida DSM 20544]
 gi|260848282|gb|EEX68289.1| replication-associated recombination protein A [Mitsuokella
           multacida DSM 20544]
          Length = 462

 Score =  146 bits (368), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 73/325 (22%), Positives = 119/325 (36%), Gaps = 48/325 (14%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +     +RPR  +EF GQ EA           +   + +  ++F GPPG GKTTLAQ++A
Sbjct: 40  EPLARRMRPRNFDEFVGQQEAVGRGHFLRRMIEM--DQIPSIIFYGPPGTGKTTLAQMIA 97

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPA 128
             +  +       V A   DL  ++          + R ++FIDEIHR +   +++L P 
Sbjct: 98  -AMTDSAFEKLNAVSAGISDLRRIVKEADEARRYYQRRTIVFIDEIHRFNKSQQDVLLPY 156

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           +ED +L L+    E P        LSR  ++            L D   + +     + E
Sbjct: 157 VEDGRLILIGATTENPFFEVNHALLSRVRIVRLY--------QLTDAQLVEVLRRALKDE 208

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
                 +RG     + V DE    +A  + G  R+A  LL                  + 
Sbjct: 209 ------ERGLGGQHVEVPDEVLLAMAQIAGGDARMALNLLEGAAAMLPTTGGTVTLDMLE 262

Query: 247 DAALLR-LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           +    R    DK G +  D                   T SA +   R +  D    Y+ 
Sbjct: 263 EITGERVQRYDKTGDNHYD-------------------TASAFIKSMRGSDPDAALHYLA 303

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLG 328
           +        +   R ++  A + +G
Sbjct: 304 RMLAAGEDVKFIARRIVICASEDVG 328


>gi|256044856|ref|ZP_05447760.1| recombination factor protein RarA [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|260565542|ref|ZP_05836026.1| ATPase [Brucella melitensis bv. 1 str. 16M]
 gi|265991283|ref|ZP_06103840.1| recombination factor protein RarA [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|260151610|gb|EEW86704.1| ATPase [Brucella melitensis bv. 1 str. 16M]
 gi|263002067|gb|EEZ14642.1| recombination factor protein RarA [Brucella melitensis bv. 1 str.
           Rev.1]
          Length = 437

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 79/346 (22%), Positives = 127/346 (36%), Gaps = 56/346 (16%)

Query: 1   MMDREGLL-SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M D        N  +       LRP+ L E TGQ        V        + +L  ++F
Sbjct: 1   MSDLFSTAADPNADRNRPLADRLRPKHLSEVTGQEHLTGPEGVLTRMI--ASGSLGSMVF 58

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDE 113
            GPPG GKTT+A+++A E  + F   S  + +   DL  +            + +LF+DE
Sbjct: 59  WGPPGTGKTTVARLLAGETDLAFEQISA-IFSGVADLKRVFEAARARRMSGRQTLLFVDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++   P MED  + L+    E PS       LSR                  
Sbjct: 118 IHRFNRAQQDSFLPVMEDGTVILIGATTENPSFELNAALLSR------------------ 159

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTG--LAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
                 +  + ++ E + T+++R  +  G  L + DEA   +   + G  R A  L   V
Sbjct: 160 ---ARVLTFHPHDSESIATLLKRAEEQEGQALPLDDEARASLIRMADGDGRAALTLAEEV 216

Query: 230 RDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGL 289
                         E+ DAA L+  + +             I      G   +  ISA  
Sbjct: 217 WRA-------VRPGEVFDAAKLQDVVQRRA----------PIYDKSQDGHYNL--ISALH 257

Query: 290 SEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
              R +  D    Y+ +       P   GR L+ ++ + +G+  P 
Sbjct: 258 KSVRGSDPDAALYYLSRMFDAGEDPLYIGRRLVRMSVEDIGLADPQ 303


>gi|317478867|ref|ZP_07938017.1| ATPase [Bacteroides sp. 4_1_36]
 gi|316904949|gb|EFV26753.1| ATPase [Bacteroides sp. 4_1_36]
          Length = 423

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 77/330 (23%), Positives = 122/330 (36%), Gaps = 53/330 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRPRTL+E+ GQ        V  +        +   +  GPPG+GKTTLAQ++A 
Sbjct: 3   PLAERLRPRTLDEYIGQKHLVGPGAVLRKMIDV--GRISSFILWGPPGVGKTTLAQIIAN 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAM 129
           +L   F + S  V +   D+  ++   +          +LFIDEIHR S   ++ L  A+
Sbjct: 61  KLETPFYTLSA-VTSGVKDVRDVIERAKSNRFFSQASPILFIDEIHRFSKSQQDSLLGAV 119

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E   + L+    E PS   ++  LSR  L    +        L  R      +       
Sbjct: 120 EQGTVTLIGATTENPSFEVIRPLLSRCQLYTLKSLEKDDLLELLQRAITTDTV------- 172

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
                    K   + + +  A  +   S G  R    +L  V D +E      IT ++  
Sbjct: 173 --------LKERKIELKETTA--MLRFSGGDARKLLNILELVID-SEATDPVLITDDMVT 221

Query: 248 AALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
             L +   A DK G    D+                   ISA +   R +  D    ++ 
Sbjct: 222 ERLQQNPLAYDKDGEMHYDI-------------------ISAFIKSIRGSDPDGAIYWLA 262

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +       P    R L+  A + +G+  P+
Sbjct: 263 RMVEGGEDPAFIARRLVISASEDIGLANPN 292


>gi|300858568|ref|YP_003783551.1| hypothetical protein cpfrc_01151 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686022|gb|ADK28944.1| hypothetical protein cpfrc_01151 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302206281|gb|ADL10623.1| Replication-associated recombination protein A [Corynebacterium
           pseudotuberculosis C231]
 gi|302330838|gb|ADL21032.1| Uncharacterized AAA domain-containing protein [Corynebacterium
           pseudotuberculosis 1002]
          Length = 445

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 75/326 (23%), Positives = 125/326 (38%), Gaps = 48/326 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RPR+L++  GQ       +      +   EA   V+  GPPG GKTT+A +++ 
Sbjct: 26  PLAARMRPRSLDQVVGQQHLLGPGRPLRRLIEGAGEA--SVILYGPPGTGKTTIASLIST 83

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAME 130
             G +F   S  + +   ++ A++           R VLFIDE+HR S   ++ L  A+E
Sbjct: 84  ATGHHFVGLSA-LNSGVKEVRAVIDEARRSLIHGKRTVLFIDEVHRFSKTQQDALLAAVE 142

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +  + L+    E PS   V   LSR  ++           PL D   I       E+   
Sbjct: 143 NRTVLLVAATTENPSFSVVSPLLSRSLVLQL--------QPL-DSGAIK------EVLQR 187

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             +  RG   + + VTDEA  ++ + + G  R A   L    +        T+     + 
Sbjct: 188 AIVDSRGLG-SRIHVTDEALEQLVLLAGGDARRALTYLEAAAEAISDDEQLTVDTIQENV 246

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
               +  D+ G    D+                    SA +   R +  D    Y+ +  
Sbjct: 247 DRAIVRYDRDGDQHYDV-------------------TSAFIKSIRGSDVDAALHYLARMI 287

Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIP 332
                PR   R L+  A + +G+  P
Sbjct: 288 DAGEDPRFIARRLIIHASEDIGMADP 313


>gi|152976813|ref|YP_001376330.1| recombination factor protein RarA [Bacillus cereus subsp. cytotoxis
           NVH 391-98]
 gi|152025565|gb|ABS23335.1| AAA ATPase central domain protein [Bacillus cytotoxicus NVH 391-98]
          Length = 428

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 77/327 (23%), Positives = 123/327 (37%), Gaps = 43/327 (13%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           +      +RP  + E  GQ       K+     +A       ++  GPPG GKT++A  +
Sbjct: 2   KQPLAHRMRPTNISEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           A   G  FR  +  V     D+  ++   +     VL +DE+HRL    ++ L P +E  
Sbjct: 60  AGSTGTPFRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESG 118

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
            L L+      P         SR        ++  L    +D     ++    + E    
Sbjct: 119 LLTLIGATTSNPFHAINSAIRSRC-------QIFELHALTEDDILTGLKRALADKE---- 167

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR--DFAEVAHAKTITREIADA 248
              +G     + VTDEA    A  S G  R A   L       FA    A  IT EIA+ 
Sbjct: 168 ---KGLGEYHVTVTDEAIRHFASASGGDMRSAYNALELAVLSSFATDEQAGEITLEIAEE 224

Query: 249 ALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
            L + +   DK G    D+  L+   ++  G  V              A+  L    +I+
Sbjct: 225 CLQKKSFVHDKDGDAHYDV--LSAFQKSVRGSDV------------NAALHYLAR--LIE 268

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            G +Q     R L+ +A++ +G+  P 
Sbjct: 269 AGDLQSIC--RRLLIMAYEDIGLASPQ 293


>gi|217967181|ref|YP_002352687.1| ATPase AAA [Dictyoglomus turgidum DSM 6724]
 gi|217336280|gb|ACK42073.1| AAA ATPase central domain protein [Dictyoglomus turgidum DSM 6724]
          Length = 431

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 77/346 (22%), Positives = 124/346 (35%), Gaps = 51/346 (14%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD++  L +  +  +     +RPRTLEEF G  +         +A       L  ++  G
Sbjct: 1   MDKQERLFKEDNSYEPLSFRMRPRTLEEFLGAEDIIGEKSFLRKAINK--GYLPSLIIYG 58

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEI 114
           PPG GKTTL+ ++A+ +   F   +  ++    +L   L   +        R VLF+DEI
Sbjct: 59  PPGSGKTTLSVLLAKAINAEFIELNAAIV-GVQELKEALQKAKRNLELYNKRTVLFLDEI 117

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           H  + + +++L P +E   + L+    E P        LSR  L+           PL  
Sbjct: 118 HHFNKLQQDVLLPFVERGIMILIGATTENPFFSLNTTLLSRCRLVEL--------KPLSK 169

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
                I     E +      +RG     L + ++A  EI   + G  RIA   L      
Sbjct: 170 ENIERIIKRALEDK------ERGLGERDLEINEDAMEEIVRFANGDARIALNTLELASFM 223

Query: 233 AEVAHAK----TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAG 288
              +       T               D+ G +                      TISA 
Sbjct: 224 VAPSENGKLIITRNIVKEVIGKRIFRYDQRGDEHYH-------------------TISAF 264

Query: 289 LSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           +   R +  D    Y+ +       PR   R L+  A + +G+  P
Sbjct: 265 IKSIRGSDPDAALYYLAKMLLSGEDPRFIARRLIIHAAEDIGMADP 310


>gi|294501359|ref|YP_003565059.1| ATPase [Bacillus megaterium QM B1551]
 gi|294351296|gb|ADE71625.1| ATPase, AAA family [Bacillus megaterium QM B1551]
          Length = 425

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 71/319 (22%), Positives = 118/319 (36%), Gaps = 40/319 (12%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            +RP  L++  GQ       K+     KA    L  ++  GPPG+GKTT+A  +A+    
Sbjct: 9   RMRPTHLDDVIGQQHLVGKDKMIYRMVKANH--LSSMILYGPPGVGKTTIATAIAKTTNT 66

Query: 81  NFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137
            FR  +  V  K   ++ A    +  + +L +DE+HRL    ++ L P +E+  + L+  
Sbjct: 67  AFRQLNAVVNNKKDMEIVAEEAKMSGKVILLLDEVHRLDKAKQDFLLPYLENGMIILIGA 126

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
               P         SR  +    +          D   I +     +  +       G  
Sbjct: 127 TTSNPYHAINPAIRSRCQIFELKSLTP-------DDIKIALTRALNDSSN-------GFG 172

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLR-RVRDFAEVAHAKTITREIADAALLR--LA 254
              + V D+A    A    G  R A   L   V    E      IT + A+  L +   +
Sbjct: 173 DRKIIVEDDAMNHFANSCNGDVRSALNALELAVLSTGESDGKIVITLQTAEECLQQKYFS 232

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
            DK G    D+  L+   ++  G  V      A L              +I+ G +    
Sbjct: 233 HDKNGDAHYDV--LSAFQKSIRGSDVN-----AAL---------HYLGRLIEAGDLISIN 276

Query: 315 RGRLLMPIAWQHLGIDIPH 333
             R L+ IA++ +G+  P 
Sbjct: 277 --RRLLVIAYEDIGLADPD 293


>gi|253990317|ref|YP_003041673.1| recombination factor protein RarA [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253781767|emb|CAQ84930.1| conserved hypothetical protein [Photorhabdus asymbiotica]
          Length = 447

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 77/339 (22%), Positives = 125/339 (36%), Gaps = 46/339 (13%)

Query: 8   LSRNVSQED--ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           LS + SQ +     + +RP TLE++ GQ    +  K    A   RA  L  ++  GPPG 
Sbjct: 4   LSLDFSQNEFQPLAARMRPITLEQYIGQQHLLAEGKPLPRAI--RAGQLHSMILWGPPGT 61

Query: 66  GKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GKTTLA+++      +    S        I ++ + A    N   R +LF+DE+HR +  
Sbjct: 62  GKTTLAEIIGHYAQADIERISAVTSGIKEIRESIEKARQNRNAGRRTILFVDEVHRFNKS 121

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++   P +ED  +  +    E PS       LSR        RV LL +   +     +
Sbjct: 122 QQDAFLPHIEDGTITFIGATTENPSFELNSALLSR-------ARVYLLKSLTTEEVEQVL 174

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE--VA 236
                +          G     + + +     IA    G  R +  LL  + D AE  V 
Sbjct: 175 NQAMNDK-------NNGYHGQNIVLPENTRHMIAELVTGDARRSLNLLEMMADMAENNVQ 227

Query: 237 HAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAI 296
             + +T E+ +   +         ++ D  Y               + ISA     R + 
Sbjct: 228 GQRVLTPELLNE--ISGERSARFDNKGDRYY---------------DLISALHKSVRGSA 270

Query: 297 EDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            D    +  +       P    R L+ IA + +G   P 
Sbjct: 271 PDAALYWYARIITAGGDPLYVARRLLAIASEDVGNADPR 309


>gi|26341102|dbj|BAC34213.1| unnamed protein product [Mus musculus]
          Length = 660

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 67/346 (19%), Positives = 125/346 (36%), Gaps = 35/346 (10%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLG 66
           R + +       +RP TL+++ GQ  A      L+  +EA +     +  ++  GPPG G
Sbjct: 214 RQMLEGKPLADKMRPDTLQDYIGQSRAVGQETLLRSLLEANE-----IPSLILWGPPGCG 268

Query: 67  KTTLAQVVARELGVNFRST--SGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRL 117
           KTTLA ++A     +           AK  D+  ++   +        + +LFIDEIHR 
Sbjct: 269 KTTLAHIIANNSKKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRF 328

Query: 118 SIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
           +   ++   P +E   + L+    E PS +     LSR  +I            +  R  
Sbjct: 329 NKSQQDTFLPHVECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAI 388

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLA---VTDEAACEIAMRSRGTPRIAGRLLRRVR-- 230
             + ++  +       +   +  +      + D+A   +A  S G  R     L+     
Sbjct: 389 NSLGIHVLDSSRPTDPLSHSSNCSSEPSVFIEDKAVDTLAYLSDGDARTGLNGLQLAVLA 448

Query: 231 --DFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAG 288
                +V   K+         L+     K G  +  + Y      ++         ISA 
Sbjct: 449 RLSSRKVFCKKSGQTYSPSRVLITENDVKEGLQRSHILYDRAGEEHYNC-------ISAL 501

Query: 289 LSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
               R + ++    ++ +       P    R L+  A + +G+  P
Sbjct: 502 HKAMRGSDQNASLYWLARMLEGGEDPLYVARRLVRFASEDIGLADP 547


>gi|308276523|gb|ADO26422.1| Replication-associated recombination protein A [Corynebacterium
           pseudotuberculosis I19]
          Length = 456

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 75/326 (23%), Positives = 125/326 (38%), Gaps = 48/326 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RPR+L++  GQ       +      +   EA   V+  GPPG GKTT+A +++ 
Sbjct: 37  PLAARMRPRSLDQVVGQQHLLGPGRPLRRLIEGAGEA--SVILYGPPGTGKTTIASLIST 94

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAME 130
             G +F   S  + +   ++ A++           R VLFIDE+HR S   ++ L  A+E
Sbjct: 95  ATGHHFVGLSA-LNSGVKEVRAVIDEARRSLIHGKRTVLFIDEVHRFSKTQQDALLAAVE 153

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +  + L+    E PS   V   LSR  ++           PL D   I       E+   
Sbjct: 154 NRTVLLVAATTENPSFSVVSPLLSRSLVLQL--------QPL-DSGAIK------EVLQR 198

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             +  RG   + + VTDEA  ++ + + G  R A   L    +        T+     + 
Sbjct: 199 AIVDSRGLG-SRIHVTDEALEQLVLLAGGDARRALTYLEAAAEAISDDEQLTVDTIQENV 257

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
               +  D+ G    D+                    SA +   R +  D    Y+ +  
Sbjct: 258 DRAIVRYDRDGDQHYDV-------------------TSAFIKSIRGSDVDAALHYLARMI 298

Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIP 332
                PR   R L+  A + +G+  P
Sbjct: 299 DAGEDPRFIARRLIIHASEDIGMADP 324


>gi|14349164|dbj|BAB60708.1| Werner helicase interacting protein [Mus musculus]
          Length = 660

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 67/347 (19%), Positives = 127/347 (36%), Gaps = 37/347 (10%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLG 66
           R + +       +RP TL+++ GQ  A      L+  +EA +     +  ++  GPPG G
Sbjct: 214 RQMLEGKPLADKMRPDTLQDYIGQSRAVGEETLLRSLLEANE-----IPSLILWGPPGCG 268

Query: 67  KTTLAQVVARELGVNFRST--SGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRL 117
           KTTLA ++A     +           AK  D+  ++   +        + +LFIDEIHR 
Sbjct: 269 KTTLAHIIANNSKKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRF 328

Query: 118 SIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
           +   ++   P +E   + L+    E PS +     LSR  +I            +  R  
Sbjct: 329 NKSQQDTFLPHVECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAI 388

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLA---VTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
             + ++  +       +   +  +      + D+A   +A  S G  R     L+     
Sbjct: 389 NSLGIHVLDSSRPTDPLSHSSNCSSEPSVFIEDKAVDTLAYLSDGDARTGLNGLQLAV-L 447

Query: 233 AEVAHAKTITRE-----IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISA 287
           A ++  K   ++          L+     K G  +  + Y      ++         ISA
Sbjct: 448 ARLSSKKVFCKKSGQTYSPSRVLITENDVKEGLQRSHILYDRAGEEHYNC-------ISA 500

Query: 288 GLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
                R + ++    ++ +       P    R L+  A + +G+  P
Sbjct: 501 LHKAMRGSDQNASLYWLARMLEGGEDPLYVARRLVRFASEDIGLADP 547


>gi|189230336|ref|NP_001121492.1| Werner helicase interacting protein 1 [Xenopus (Silurana)
           tropicalis]
 gi|183985959|gb|AAI66299.1| LOC100158593 protein [Xenopus (Silurana) tropicalis]
          Length = 577

 Score =  145 bits (367), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 60/330 (18%), Positives = 117/330 (35%), Gaps = 26/330 (7%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP  L ++ GQ +      +     ++    +  ++  GPPG GKTTLA ++A+
Sbjct: 154 PLADKMRPTDLNDYMGQKKVLGENTLLRNLLQSND--IPSIILWGPPGCGKTTLAHIIAK 211

Query: 77  ELGVNFRST--SGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYP 127
               N           A   D+  ++   +        + +LF+DEIHR +   ++   P
Sbjct: 212 NTHKNSCRFVTLSATSASTSDVREVIKQAQNEQRLFKRKTILFVDEIHRFNKTQQDTFLP 271

Query: 128 AMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
            +E   + L+    E PS +     LSR  +I            +  R    + +   ++
Sbjct: 272 HVECGTITLIGATTENPSFQVNTALLSRCRVIVLEKLSVEAMEAILMRAVGSLGIKVLKV 331

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
            +           T + V ++A   +A    G  R     L+     +  A    I   I
Sbjct: 332 GEQPVHSSSDVSETPIYVEEKALTTLAHLCDGDARTGLNGLQLSVQASLAAEKDPIEHGI 391

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
               +++    K G  +  + Y      ++         ISA     R + ++    ++ 
Sbjct: 392 ----IIKEEHIKEGLQRSHILYDRAGEEHYNC-------ISALHKSMRGSDQNASLYWLG 440

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +       P    R L+  A + +G+  P 
Sbjct: 441 RMLEGGENPLYVARRLVRFASEDVGLADPQ 470


>gi|311064077|ref|YP_003970802.1| AAA family ATPase [Bifidobacterium bifidum PRL2010]
 gi|310866396|gb|ADP35765.1| AAA family ATPase [Bifidobacterium bifidum PRL2010]
          Length = 468

 Score =  145 bits (367), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 87/359 (24%), Positives = 131/359 (36%), Gaps = 63/359 (17%)

Query: 2   MDREGLLSRNVSQED---ADISLLRPRTLEEFTGQVEACSNLKVFIE----AAKARAEAL 54
           M    L       +D        +RPRT++E  GQ                ++K    A 
Sbjct: 1   MTENDLFGAADVPDDMTRPLAVRMRPRTVDEVLGQSHVLGEGSPLRRLANPSSKGSLTAP 60

Query: 55  DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------D 107
             ++  GPPG+GKTTLA +VAR+ G  F   S  V +   D+  +L     R        
Sbjct: 61  SSIIMFGPPGVGKTTLATIVARQSGRAFEELSA-VTSGVKDVRDVLARARRRLVGDGTET 119

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGL 165
           VLFIDE+HR S   ++ L PA+E+  +  +    E PS   +K  LSR  ++   +    
Sbjct: 120 VLFIDEVHRFSKSQQDALLPAVENRDVTFIGATTENPSFSVIKPLLSRSVVVKLESLEPS 179

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
               L  R                   +RG     + + D A  EI   + G  R    +
Sbjct: 180 DLATLIARAVED---------------KRGLNG-EVKIDDAAVNEIVRMAGGDARKTLTI 223

Query: 226 LRRVR-----DFAEVAHAK--TITREIADAALLR--LAIDKMGFDQLDLRYLTMIARNFG 276
           L         D A    A+  TIT ++    +    +  DK G D  D+           
Sbjct: 224 LEAAAGAVTGDKARKKGARRPTITPDVVSQVMDAATVRYDKDGDDHYDV----------- 272

Query: 277 GGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                   ISA +   R +  D    Y+ +       PR   R +M  A + +G+  P 
Sbjct: 273 --------ISAFIKSMRGSDPDAAIHYLARMLRAGEDPRFIARRIMIAASEEVGMAAPQ 323


>gi|169832181|ref|YP_001718163.1| recombination factor protein RarA [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169639025|gb|ACA60531.1| AAA ATPase, central domain protein [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 435

 Score =  145 bits (367), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 68/346 (19%), Positives = 113/346 (32%), Gaps = 53/346 (15%)

Query: 5   EGLLSR--NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           + L S              +RPR L+EFTGQ       K+   A +  ++ L  ++  GP
Sbjct: 9   DDLFSPVLENGPHRPLADRMRPRELDEFTGQEHIVGPGKLLRRAIE--SDLLGSIILYGP 66

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIH 115
           PG GKTTLA +++R    NFR+ S  V +   +L  ++            + +LF+DE H
Sbjct: 67  PGSGKTTLAHIISRTTKSNFRTVSA-VSSGVKELRQVIEAAADSLKFHGRKTILFVDECH 125

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
             +   +++L P +E   +  +    E P        LSR  +             +  R
Sbjct: 126 AFNKSQQDVLLPGIEKGIVTFIGGTTENPYFEMRGALLSRSRIFRLEELSTEDLESILRR 185

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                              +RG       V  EA   +   + G  R A   L       
Sbjct: 186 --------------ALADRERGLGEYPAEVEPEALAHLVGVAGGDARSALNALELAVMST 231

Query: 234 EVAHAKTIT----REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGL 289
                                  +  D+ G    D+                   ISA +
Sbjct: 232 PPGPDGIRRINLATAQDSIQKRAVRYDQAGDQHYDV-------------------ISAFI 272

Query: 290 SEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
              R +  D    +  +  +     R   R L+ +A + +G+  P 
Sbjct: 273 KSIRGSDPDAALHWYARMTYAGEDQRFIMRRLIILASEDIGLADPR 318


>gi|313886300|ref|ZP_07820026.1| recombination factor protein RarA [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312924245|gb|EFR35028.1| recombination factor protein RarA [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 439

 Score =  145 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 71/334 (21%), Positives = 124/334 (37%), Gaps = 52/334 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACS---NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
                +RP+TLEE+ GQ         L+V +E        +  ++  GPPG+GKTTLA++
Sbjct: 7   PLAERMRPKTLEEYVGQSHLVGANAPLRVMLERG-----HIPSMILWGPPGVGKTTLARL 61

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLED-----------RDVLFIDEIHRLSIIVE 122
           +++ +     S S  V +   D+   L   ++           R +LFIDEIHR S   +
Sbjct: 62  LSQMMQCRCYSLSA-VGSGVADVRKTLQEAKEAQSGLFSQHQGRPILFIDEIHRFSKSQQ 120

Query: 123 EILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           + L  A+E   + L+    E PS + ++  LSR  +           + L DR       
Sbjct: 121 DSLLAAVEQGVVTLIGATTENPSFQVIRPLLSRCQVFVLKPLEPSDLSQLIDR------- 173

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
             +  + L +          + +       +   + G  R    LL      A   H   
Sbjct: 174 -VFSTDPLFS-------RYQVTLEGADRELLIHLAGGDARKLLNLLEMTLSMALEQHPDE 225

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
              ++   A+  +A  +      D             G +  +  SA +   R +  D  
Sbjct: 226 TAVQLTGEAIASVARQQPAAFDRD-------------GELHYDIASAFIKSIRGSDPDAA 272

Query: 301 EPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
             +M +       PR   R ++  A + +G+  P
Sbjct: 273 LYWMARLIEGGEEPRFIARRVVISAAEDIGLANP 306


>gi|310287217|ref|YP_003938475.1| AAA family ATPase [Bifidobacterium bifidum S17]
 gi|309251153|gb|ADO52901.1| AAA family ATPase [Bifidobacterium bifidum S17]
          Length = 468

 Score =  145 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 87/359 (24%), Positives = 131/359 (36%), Gaps = 63/359 (17%)

Query: 2   MDREGLLSRNVSQED---ADISLLRPRTLEEFTGQVEACSNLKVFIE----AAKARAEAL 54
           M    L       +D        +RPRT++E  GQ                ++K    A 
Sbjct: 1   MTENDLFGAADVPDDMTRPLAVRMRPRTVDEVLGQSHVLGEGSPLRRLANPSSKGSLTAP 60

Query: 55  DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------D 107
             ++  GPPG+GKTTLA +VAR+ G  F   S  V +   D+  +L     R        
Sbjct: 61  SSIIMFGPPGVGKTTLATIVARQSGRAFEELSA-VTSGVKDVRDVLARARRRLVGDGTET 119

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGL 165
           VLFIDE+HR S   ++ L PA+E+  +  +    E PS   +K  LSR  ++   +    
Sbjct: 120 VLFIDEVHRFSKSQQDALLPAVENRDVTFIGATTENPSFSVIKPLLSRSVVVKLESLEPS 179

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
               L  R                   +RG     + + D A  EI   + G  R    +
Sbjct: 180 DLATLIARAVED---------------KRGLNG-EVKIDDAAVNEIVRMAGGDARKTLTI 223

Query: 226 LRRVR-----DFAEVAHAK--TITREIADAALLR--LAIDKMGFDQLDLRYLTMIARNFG 276
           L         D A    A+  TIT ++    +    +  DK G D  D+           
Sbjct: 224 LEAAAGAVTGDKARKKGARRPTITPDVVSQVMDAATVRYDKDGDDHYDV----------- 272

Query: 277 GGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                   ISA +   R +  D    Y+ +       PR   R +M  A + +G+  P 
Sbjct: 273 --------ISAFIKSMRGSDPDAAIHYLARMLRAGEDPRFIARRIMIAASEEVGMAAPQ 323


>gi|299135226|ref|ZP_07028417.1| AAA ATPase central domain protein [Afipia sp. 1NLS2]
 gi|298590203|gb|EFI50407.1| AAA ATPase central domain protein [Afipia sp. 1NLS2]
          Length = 443

 Score =  145 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 73/342 (21%), Positives = 113/342 (33%), Gaps = 56/342 (16%)

Query: 6   GLLSRNVSQEDADI---SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
            L +    ++DA       LRP  L +  GQ              + R   L  ++F GP
Sbjct: 11  NLFAAAGLEQDAPRPLPEKLRPHALADVVGQDHILGPDGALTRMLETR--TLGSLIFWGP 68

Query: 63  PGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           PG GKTT+A+++A    ++F   S        + K  D A          +LF+DE+HR 
Sbjct: 69  PGTGKTTVARLLADATELHFEQISAVFSGVADLKKVFDAARARRETGKGTLLFVDEVHRF 128

Query: 118 SIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
           +   ++   P MED  + L+    E PS       LSR  ++   +        L  R  
Sbjct: 129 NRAQQDSFLPVMEDGTVVLVGATTENPSFELNAALLSRARVLVFHSLDDAAIEKLYAR-- 186

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
                        + I  R        +  EA   +   + G  R A  L   V   A  
Sbjct: 187 ------------AEEIEGRAL-----PLDSEARAVLVRMADGDGRAALTLAEEVWRAARA 229

Query: 236 AHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
              +          L R A   DK      +L                   ISA     R
Sbjct: 230 --DEVFNAAQLQEILQRRAPIYDKSADGHYNL-------------------ISALHKSVR 268

Query: 294 DAIEDLIEPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
            +  D    Y+ +       P    R ++ +A + +G+  P 
Sbjct: 269 GSDPDAALYYLARMLDAGEDPLFLARRVVRMAVEDIGMADPQ 310


>gi|291301352|ref|YP_003512630.1| AAA ATPase central domain-containing protein [Stackebrandtia
           nassauensis DSM 44728]
 gi|290570572|gb|ADD43537.1| AAA ATPase central domain protein [Stackebrandtia nassauensis DSM
           44728]
          Length = 448

 Score =  145 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 74/339 (21%), Positives = 119/339 (35%), Gaps = 55/339 (16%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           +   + +    + +RP TL+E  GQ    +      +      +A   V+  GPPG GKT
Sbjct: 16  TEEPAADAPLAARMRPATLDELVGQQHLLTPGSPLRQ--LVGGDAPLSVILWGPPGCGKT 73

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIV 121
           T+A +VAR     +   S  + A   D+ A++              VLFIDE+HR +   
Sbjct: 74  TVANLVARATDRRYVPMSA-LNAGVKDVRAVIETARATRRRGGAPTVLFIDEVHRFTKTQ 132

Query: 122 EEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           ++ L  A+ED  + L+    E P    V   LSR  L+            L DR     R
Sbjct: 133 QDALLAAVEDRTITLLAATTENPYFSVVSPLLSRCVLLTLEPLTEDDIRALVDRALSDER 192

Query: 180 ----LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
                   E E    +V+  A     A+T   A   + ++ GT  +         D A V
Sbjct: 193 GLGGEVALEPEAADHLVRLAAGDARKALTALEAAAASAKAAGTTVVDLATAESAVDVAAV 252

Query: 236 AHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDA 295
                               D+ G    D+   + + ++  G  V               
Sbjct: 253 R------------------YDRDGDSHYDIA--SALIKSLRGSDV--------------- 277

Query: 296 IEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
             D    ++ +       PR   R L+  A + +G+  P
Sbjct: 278 --DAALHWLARMIVAGEDPRFIARRLVIFASEDVGMADP 314


>gi|229019621|ref|ZP_04176433.1| hypothetical protein bcere0030_41230 [Bacillus cereus AH1273]
 gi|229025861|ref|ZP_04182257.1| hypothetical protein bcere0029_41520 [Bacillus cereus AH1272]
 gi|228735413|gb|EEL86012.1| hypothetical protein bcere0029_41520 [Bacillus cereus AH1272]
 gi|228741669|gb|EEL91857.1| hypothetical protein bcere0030_41230 [Bacillus cereus AH1273]
          Length = 428

 Score =  145 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 77/327 (23%), Positives = 125/327 (38%), Gaps = 43/327 (13%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           +      +RP  ++E  GQ       K+     +A       ++  GPPG GKT++A  +
Sbjct: 2   KQPLAHRMRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           A   G  FR  +  V     D+  ++   +     VL +DE+HRL    ++ L P +E  
Sbjct: 60  AGSTGTPFRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESG 118

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
            L L+      P         SR        ++  L    +D   I ++    + E    
Sbjct: 119 LLTLIGATTSNPFHAINSAIRSRC-------QIFELHALTEDDILIGLKRALEDKE---- 167

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR--DFAEVAHAKTITREIADA 248
              +G     + VT+EA    A  S G  R A   L       F     A  IT EIA+ 
Sbjct: 168 ---KGLGEYDVTVTNEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEE 224

Query: 249 ALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
            L + +   DK G    D+  L+   ++  G  V              A+  L    +I+
Sbjct: 225 CLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDV------------NAALHYLAR--LIE 268

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            G +Q    GR L+ +A++ +G+  P 
Sbjct: 269 AGDLQSI--GRRLLIMAYEDVGLASPQ 293


>gi|33863885|ref|NP_895445.1| recombination factor protein RarA/unknown domain fusion protein
           [Prochlorococcus marinus str. MIT 9313]
 gi|33635468|emb|CAE21793.1| putative ATPase, AAA family [Prochlorococcus marinus str. MIT 9313]
          Length = 735

 Score =  145 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 79/347 (22%), Positives = 134/347 (38%), Gaps = 48/347 (13%)

Query: 2   MDREGLLSRNVSQED----ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           MD+  L +    QE          LRPRTLEEF GQ    +  ++   A  A  + + ++
Sbjct: 1   MDQ-NLFTYQGDQELKRHAPLADRLRPRTLEEFVGQGSILAEGRLLRRAIAA--DRVGNL 57

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLF 110
           L  GPPG+GKTTLA+++A     NF S +  V+A   +L   +   + R        +LF
Sbjct: 58  LLHGPPGVGKTTLARIIAGHTRANFSSLNA-VLAGVKELRQEVDAAKQRLERHGLRTILF 116

Query: 111 IDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           IDE+HR +   ++ L P +E+  + L+    E P     K  +SR  L           +
Sbjct: 117 IDEVHRFNSAQQDALLPWVENGTVTLIGATTENPYFEVNKALVSRSRLFRLQALENADLH 176

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            L              ++      +RG     + ++  AA  +   + G  R     L  
Sbjct: 177 RL--------------LKHALQDCERGYGDRQVMLSTAAANHLVNVANGDARSLLNALEL 222

Query: 229 VRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAG 288
             + +      +I   +A A        +    +  + Y          G    +TISA 
Sbjct: 223 AVESSRPNEQGSIHINLAIA--------EESIQERAVLY-------DKHGDAHFDTISAF 267

Query: 289 LSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +   R +  D    ++ +       PR   R ++  A + +G+  P 
Sbjct: 268 IKSLRGSDADAALFWLARMVEAGENPRFIFRRMLIAAGEDIGLADPQ 314


>gi|49481747|ref|YP_038449.1| recombination factor protein RarA [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|196034307|ref|ZP_03101716.1| ATPase, AAA family [Bacillus cereus W]
 gi|196039170|ref|ZP_03106476.1| ATPase, AAA family [Bacillus cereus NVH0597-99]
 gi|49333303|gb|AAT63949.1| ATPase, AAA family [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|195992849|gb|EDX56808.1| ATPase, AAA family [Bacillus cereus W]
 gi|196029797|gb|EDX68398.1| ATPase, AAA family [Bacillus cereus NVH0597-99]
          Length = 428

 Score =  145 bits (366), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 75/327 (22%), Positives = 122/327 (37%), Gaps = 43/327 (13%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           +      +RP  ++E  GQ       K+     +A       ++  GPPG GKT++A  +
Sbjct: 2   KQPLAHRMRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           A   G  FR  +  V     D+  ++   +     VL +DE+HRL    ++ L P +E  
Sbjct: 60  AGSTGTPFRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESG 118

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
            L L+      P         SR  +           + L +   +       E +    
Sbjct: 119 LLTLIGATTSNPFHAINSAIRSRCQIFEL--------HALTEEDLLIGLKRALEDK---- 166

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR--DFAEVAHAKTITREIADA 248
             ++G     + VT EA    A  S G  R A   L       F     A  IT EIA+ 
Sbjct: 167 --EKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEE 224

Query: 249 ALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
            L + +   DK G    D+  L+   ++  G  V              A+  L    +I+
Sbjct: 225 CLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDV------------NAALHYLAR--LIE 268

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            G +Q    GR L+ +A++ +G+  P 
Sbjct: 269 AGDLQSI--GRRLLIMAYEDIGLASPQ 293


>gi|254302702|ref|ZP_04970060.1| RuvB family helicase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
 gi|148322894|gb|EDK88144.1| RuvB family helicase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
          Length = 407

 Score =  145 bits (366), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 68/336 (20%), Positives = 119/336 (35%), Gaps = 58/336 (17%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            L  +N    +     LRP++LE+F GQ +      V           L + +F GPPG 
Sbjct: 2   NLFQKNYKNVEPLAYKLRPKSLEDFVGQEKLLGKDGVIRRLIL--NSTLSNSIFYGPPGC 59

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLS 118
           GK++L ++++  L  NF   +    A   D+  ++            R +LF+DEIHR +
Sbjct: 60  GKSSLGEIISNTLDCNFEKLNA-TTASVSDIRNVVETARRNIELYNKRTILFLDEIHRFN 118

Query: 119 IIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
              ++ L    ED  L L+    E P        LSR                      +
Sbjct: 119 KNQQDALLSYTEDGTLTLIGATTENPYYNINNALLSRV---------------------M 157

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
                    +D+  ++ +G     ++++D+    I   S+G  RIA   +    +     
Sbjct: 158 VFEFKALTNDDISKLIDKGLNFLNISMSDKIKEIIIDISQGDSRIALNYVEMYNNI---- 213

Query: 237 HAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAI 296
           H++    EI      R        D+ D+                   ISA +   R + 
Sbjct: 214 HSQMSEDEIFSIFKERQVSFDKKQDKYDM-------------------ISAFIKSIRGSD 254

Query: 297 EDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGID 330
            D    ++ +       P+   R L   A + +G+ 
Sbjct: 255 PDAAVYWLARLLDGGEDPKYMARRLFIEASEDIGMA 290


>gi|311031534|ref|ZP_07709624.1| recombination factor protein RarA [Bacillus sp. m3-13]
          Length = 423

 Score =  145 bits (366), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 69/332 (20%), Positives = 121/332 (36%), Gaps = 51/332 (15%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
                   +RPRT++E  GQ     + K+     KA+   L  ++  GPPG+GKT++A  
Sbjct: 2   NNKPLAFRMRPRTIDEMVGQEHLVGDGKIIQRMVKAKH--LSSMILYGPPGIGKTSIATA 59

Query: 74  VARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           +A      FR+ +  V  K   ++ A    +  + +L +DE+HRL    ++ L P +E+ 
Sbjct: 60  IAGSTQYAFRTLNAVVHNKKDMEIVAEEAKMSGKVILILDEVHRLDKAKQDFLLPHLENG 119

Query: 133 QLDLM--VGEGPSARSVKINLSRFT-----LIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           ++ L+      P         SR        ++      ++   L+D+            
Sbjct: 120 RIVLIGATTSNPYHAINPAIRSRCQIFELHPLSVAEIKHVIMQALEDK------------ 167

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR-- 243
                  +RG     + + + A    A    G  R A   L              I    
Sbjct: 168 -------ERGFGDYQVDLAERAMEHFANGCGGDVRSALNALELAVLSTTPNEDGKIVIGV 220

Query: 244 EIADAALLR--LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           E A+  L +     DK G    D+  L+   ++  G  V      A L            
Sbjct: 221 ETAEECLQKKSFYHDKDGDGHYDV--LSAFQKSIRGSDVD-----AAL---------HYL 264

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
             +I+ G +     GR L+ IA++ + +  P 
Sbjct: 265 GRLIEAGDLVSI--GRRLLVIAYEDISLANPQ 294


>gi|224539375|ref|ZP_03679914.1| hypothetical protein BACCELL_04280 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519010|gb|EEF88115.1| hypothetical protein BACCELL_04280 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 425

 Score =  145 bits (366), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 76/330 (23%), Positives = 121/330 (36%), Gaps = 53/330 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP+TL+++ GQ        V  +   A    +   +  GPPG+GKTTLAQ++A 
Sbjct: 3   PLAERLRPKTLDDYIGQKHLVGPGAVLRKMIDA--GRISSFILWGPPGVGKTTLAQIIAN 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAM 129
           +L   F + S  V +   D+  ++   +          +LFIDEIHR S   ++ L  A+
Sbjct: 61  KLETPFYTLSA-VTSGVKDVREVIDRAKSNRFFSQGSPILFIDEIHRFSKSQQDSLLGAV 119

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E   + L+    E PS   ++  LSR  L    +        L  R              
Sbjct: 120 EQGTVTLIGATTENPSFEVIRPLLSRCQLYVLKSLEKDDLLELLQRAITTDH-------- 171

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
                    K   + + +  A  +   S G  R    +L  V   +E      IT E+  
Sbjct: 172 -------ILKERTIELKETTA--MLRYSGGDARKLLNILDLVV-SSEAGDPVVITDEMVT 221

Query: 248 AALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
             L +   A DK G    D+                   ISA +   R +  D    ++ 
Sbjct: 222 ERLQQNPLAYDKDGEMHYDI-------------------ISAFIKSIRGSDPDGAIYWLA 262

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +       P    R L+  A + +G+  P+
Sbjct: 263 RMVEAGEDPAFIARRLVISASEDVGLANPN 292


>gi|289178455|gb|ADC85701.1| ATPase, AAA family [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 520

 Score =  145 bits (366), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 79/356 (22%), Positives = 132/356 (37%), Gaps = 62/356 (17%)

Query: 2   MDREGLLSRNVSQE--DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARA----EALD 55
           M  +   + + S+E        +RP TL+E  GQ    +        A + +     A  
Sbjct: 17  MTNDLFAASDPSEEVVRPLAVRMRPTTLDEVVGQRHVLAPGSPLRRLADSASTGSLTAPS 76

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DV 108
            V+  GPPG+GKTTLA +VA++ G  +   S  V +   DL  +L    +R        V
Sbjct: 77  SVILFGPPGVGKTTLAHIVAKQSGRQYEELSA-VTSGVKDLREVLRRAHERLVSQGKETV 135

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLL 166
           LFIDE+HR S   ++ L P++E+  +  +    E PS   +K  LSR  ++   +     
Sbjct: 136 LFIDEVHRFSKSQQDALLPSVENRDVTFIAATTENPSFSVIKPLLSRSVVVKLESLEPEE 195

Query: 167 TNPLQDR-------FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTP 219
              + +R        G  +R+    ++ +  +    A+ +   +   A       S    
Sbjct: 196 LRTVIERAVSNPRGLGGKVRVQGDAVDGIIRLAGGDARKSLTILEAAAGAVDESGSNVPA 255

Query: 220 RIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGP 279
            I   ++  V D A V                    D+ G D  D+              
Sbjct: 256 EITTDVVSTVMDVAAVR------------------YDRNGDDHYDV-------------- 283

Query: 280 VGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                ISA +   R +  D    Y+ +       PR   R +M  A + +G+  P 
Sbjct: 284 -----ISAFIKSMRGSDVDATLHYLARMIRAGEDPRFIARRIMIAAAEEVGMAAPQ 334


>gi|228935720|ref|ZP_04098533.1| hypothetical protein bthur0009_41650 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228823958|gb|EEM69777.1| hypothetical protein bthur0009_41650 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 428

 Score =  145 bits (366), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 75/327 (22%), Positives = 122/327 (37%), Gaps = 43/327 (13%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           +      +RP  ++E  GQ       K+     +A       ++  GPPG GKT++A  +
Sbjct: 2   KQPLAHRMRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           A   G  FR  +  V     D+  ++   +     VL +DE+HRL    ++ L P +E  
Sbjct: 60  AGSTGTPFRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESG 118

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
            L L+      P         SR  +           + L +   +       E +    
Sbjct: 119 LLTLIGATTSNPFHAINSAIRSRCQIFEL--------HALTEEDLLIGLKRALEDK---- 166

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR--DFAEVAHAKTITREIADA 248
             ++G     + VT EA    A  S G  R A   L       F     A  IT EIA+ 
Sbjct: 167 --EKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEE 224

Query: 249 ALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
            L + +   DK G    D+  L+   ++  G  V              A+  L    +I+
Sbjct: 225 CLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDV------------NAALHYLAR--LIE 268

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            G +Q    GR L+ +A++ +G+  P 
Sbjct: 269 AGDLQSI--GRRLLIMAYEDIGLASPQ 293


>gi|312890548|ref|ZP_07750084.1| AAA ATPase central domain protein [Mucilaginibacter paludis DSM
           18603]
 gi|311297006|gb|EFQ74139.1| AAA ATPase central domain protein [Mucilaginibacter paludis DSM
           18603]
          Length = 426

 Score =  145 bits (366), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 72/331 (21%), Positives = 126/331 (38%), Gaps = 55/331 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+ L+E+ GQ        V  +A +  + +L  ++F GPPG+GKTTLA ++++
Sbjct: 6   PLAERMRPKNLDEYVGQKHLVGPGAVLRKAIE--SGSLPSMIFWGPPGVGKTTLAYIISQ 63

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTN---LEDRD----VLFIDEIHRLSIIVEEILYPAM 129
            L   F S S  + +   D+  ++     L+ +D    VLFIDEIHR S   ++ L  A+
Sbjct: 64  SLDRPFFSLSA-INSGVKDVREVIEKASLLKQQDATLPVLFIDEIHRFSKSQQDSLLGAV 122

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E   + L+    E PS   +   LSR  +         +  PL +   I +     + ++
Sbjct: 123 ERGIVTLIGATTENPSFEVISALLSRCQV--------YILKPLSEDDLIHLLQTSQQQDE 174

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR---DFAEVAHAKTITRE 244
           +        K   + + D  A      S G  R    +   +    D   +     +  E
Sbjct: 175 V-------LKKRNITIEDYEAL--IRLSGGDARKLLNIFELLINSLDGESITITNELVLE 225

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
                L     DK G    D+                   ISA +   R    +    ++
Sbjct: 226 HVQQNLAL--YDKAGEQHYDI-------------------ISAFIKSMRGTDPNGAVYWL 264

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +       P    R ++ +A + +G   P+
Sbjct: 265 ARMIVGGEDPLFIARRMLILASEDIGNANPN 295


>gi|212716947|ref|ZP_03325075.1| hypothetical protein BIFCAT_01891 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660232|gb|EEB20807.1| hypothetical protein BIFCAT_01891 [Bifidobacterium catenulatum DSM
           16992]
          Length = 464

 Score =  145 bits (366), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 89/361 (24%), Positives = 137/361 (37%), Gaps = 73/361 (20%)

Query: 5   EGLLSRNVSQED---ADISLLRPRTLEEFTGQVEACSNLKVFIE----AAKARAEALDHV 57
           E L     + ED        +RP +++E  GQ                A+K    A   +
Sbjct: 3   EDLFGAMDAPEDMIRPLAVRMRPSSVDEVVGQSRVLGQGSPLRRLANPASKGSLTAPSSI 62

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLF 110
           +  GPPG+GKTTLA +VA++ G  F   S  V +   D+  +L    DR        VLF
Sbjct: 63  ILFGPPGVGKTTLAYIVAKQSGRVFEELSA-VTSGVKDVRDVLRRAHDRLVAEGKETVLF 121

Query: 111 IDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           IDE+HR S   ++ L P++E+  +  +    E PS   +K  LSR  ++   +       
Sbjct: 122 IDEVHRFSKSQQDALLPSVENRDVTFIAATTENPSFSVIKPLLSRSVVVKLES------- 174

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAK-----LTGLAVTDEAACEIAMRSRGTPRIAG 223
                          E +DLKT++ R  +        + + DEA  EI   + G  R   
Sbjct: 175 --------------LEPDDLKTLINRAIESEYGLKNEVKINDEAVDEIVRMAGGDARKTL 220

Query: 224 RLLRRVR-----DFAEVAHAK--TITREIADAALLR--LAIDKMGFDQLDLRYLTMIARN 274
            +L         D A    AK   IT ++    +    +  DK G D  D+         
Sbjct: 221 TILEAAAGALTGDKARKKGAKRPIITPDVVSQVMDVATVRYDKDGDDHYDV--------- 271

Query: 275 FGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
                     ISA +   R +  D    Y+ +       PR   R +M  A + +G+  P
Sbjct: 272 ----------ISAFIKSMRGSDPDATMHYLARMLRAGEDPRFIARRIMIAASEEVGMAAP 321

Query: 333 H 333
            
Sbjct: 322 Q 322


>gi|229048107|ref|ZP_04193680.1| hypothetical protein bcere0027_40800 [Bacillus cereus AH676]
 gi|228723262|gb|EEL74634.1| hypothetical protein bcere0027_40800 [Bacillus cereus AH676]
          Length = 420

 Score =  145 bits (366), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 76/320 (23%), Positives = 122/320 (38%), Gaps = 43/320 (13%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  ++E  GQ       K+     +A       ++  GPPG GKT++A  +A   G  
Sbjct: 1   MRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAIAGSTGTP 58

Query: 82  FRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137
           FR  +  V     D+  ++   +     VL +DE+HRL    ++ L P +E   L L+  
Sbjct: 59  FRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLLTLIGA 117

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
               P         SR  +           + L +   +       E +      ++G  
Sbjct: 118 TTSNPFHAINSAIRSRCQIFEL--------HALTEEDILIGLKRALEDK------EKGLG 163

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR--DFAEVAHAKTITREIADAALLRLA- 254
              + VTDEA    A  S G  R A   L       F     A  IT EIA+  L + + 
Sbjct: 164 EYAVTVTDEALHHFANASGGDMRSAYNALELAVLSSFTTDDQAAEITLEIAEECLQKKSF 223

Query: 255 -IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
             DK G    D+  L+   ++  G  V              A+  L    +I+ G +Q  
Sbjct: 224 VHDKGGDAHYDV--LSAFQKSVRGSDV------------NAALHYLAR--LIEAGDLQSI 267

Query: 314 PRGRLLMPIAWQHLGIDIPH 333
             GR L+ +A++ +G+  P 
Sbjct: 268 --GRRLLIMAYEDIGLASPQ 285


>gi|269792161|ref|YP_003317065.1| AAA ATPase central domain-containing protein [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269099796|gb|ACZ18783.1| AAA ATPase central domain protein [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 421

 Score =  145 bits (366), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 84/346 (24%), Positives = 133/346 (38%), Gaps = 58/346 (16%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHV 57
           M DR  L++            +RPR+L+E+ GQ         L++ I +      +L   
Sbjct: 1   MEDRPSLMTP-------LPERMRPRSLDEYVGQEHLLGEGGPLRLLISS-----NSLRSC 48

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRD-------VLF 110
           +  GPPG+GKTTL +++A   G      +  V +K  DL AL               + F
Sbjct: 49  ILYGPPGVGKTTLVRLMATTTGRELLEINA-VTSKLSDLRALADRAASLTSMGFEPPIAF 107

Query: 111 IDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +DEI+  +   + +L P +E  Q+ L+    E P     K  LSR  +            
Sbjct: 108 VDEIYHFNSQQQNVLLPFVESGQMVLVGTTTENPWFEVNKTLLSRMLVYEL--------K 159

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
           PL+DR  I + +   E         RG    GL+VTD+A   +A  S+G  R A   L  
Sbjct: 160 PLEDRHVIQVLVRALE------DFDRGLGRLGLSVTDDALAALAASSQGDLRQALVRLET 213

Query: 229 VRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAG 288
           V      +  + +  E         A     F + D +     A    G       ISA 
Sbjct: 214 VASAVAASGGRVMGEE------QVAAFAGRAFKRYDRK-----ADQHYG------VISAF 256

Query: 289 LSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           +   R +  D    ++ +       PR   R +  +A + +G+  P
Sbjct: 257 IKSVRGSDPDAAVYWLARMLESGEDPRFIARRICILAAEEVGLADP 302


>gi|149202871|ref|ZP_01879842.1| ATPase, AAA family protein [Roseovarius sp. TM1035]
 gi|149143417|gb|EDM31453.1| ATPase, AAA family protein [Roseovarius sp. TM1035]
          Length = 436

 Score =  145 bits (366), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 72/330 (21%), Positives = 120/330 (36%), Gaps = 58/330 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRPR L +  GQ +               + +L  ++F GPPG+GKTT+A+++A 
Sbjct: 20  PLADRLRPRRLVDVIGQEQVLGPEAPL--GVMLASGSLSSLVFWGPPGVGKTTIARLLAD 77

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
           E  ++F   S      P + K  D A          +LF+DEIHR +   ++   P MED
Sbjct: 78  ETDLHFVQISAIFTGVPDLRKVFDEAKHRRTQGRGTLLFVDEIHRFNKAQQDGFLPHMED 137

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             + L+    E PS       LSR  ++  T                        + D++
Sbjct: 138 GTILLVGATTENPSFELNAALLSRAQVLVLTR---------------------LTLADME 176

Query: 190 TIVQRGAKLTG--LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            + QR  +  G  L +   A   +   + G  R    L+ +V   A       +      
Sbjct: 177 RLAQRAEQELGRALPLDGPAREALLDMADGDGRALLNLIEQV---AAWKVEGKLDSAALA 233

Query: 248 AALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
             L++ A   DK G +  +L                   ISA     R +  D    ++ 
Sbjct: 234 TRLMKRAAKYDKSGDEHYNL-------------------ISALHKSVRGSDPDAALYWLA 274

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +        R   R ++ +A + +G+  P 
Sbjct: 275 RMLTGGEDARYLARRILRMAIEDIGLADPQ 304


>gi|317476021|ref|ZP_07935274.1| ATPase [Bacteroides eggerthii 1_2_48FAA]
 gi|316907816|gb|EFV29517.1| ATPase [Bacteroides eggerthii 1_2_48FAA]
          Length = 372

 Score =  145 bits (366), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 80/330 (24%), Positives = 125/330 (37%), Gaps = 53/330 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP+TL+E+ GQ        V  +   A    +   +  GPPG+GKTTLAQ++A 
Sbjct: 3   PLAERLRPKTLDEYIGQKHLVGPGAVLRKMIDA--GRISSFILWGPPGVGKTTLAQIIAN 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAM 129
           +L   F + S  V +   D+  ++   +          +LFIDEIHR S   ++ L  A+
Sbjct: 61  KLETPFYTLSA-VTSGVKDVRDVIDRAKSNRFFSQASPILFIDEIHRFSKSQQDSLLGAV 119

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E   + L+    E PS   ++  LSR  L    +        L  R              
Sbjct: 120 EQGTVTLIGATTENPSFEVIRPLLSRCQLYVLKSLEKDDLLELLQR-------------A 166

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           + T VQ   K   + + +  A  +   S G  R    +L  V   +E      IT E+  
Sbjct: 167 VTTDVQ--LKERQIELRETTA--MLRYSGGDARKLLNILDLVVQ-SEAGDPVVITDEMVT 221

Query: 248 AALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
             L +   A DK G    D+                   ISA +   R +  D    ++ 
Sbjct: 222 ERLQQNPLAYDKDGEMHYDI-------------------ISAFIKSIRGSDPDGAIYWLA 262

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +       P    R L+  A + +G+  P+
Sbjct: 263 RMVEGGEDPAFIARRLVISASEDIGLANPN 292


>gi|298291465|ref|YP_003693404.1| ATPase AAA [Starkeya novella DSM 506]
 gi|296927976|gb|ADH88785.1| AAA ATPase central domain protein [Starkeya novella DSM 506]
          Length = 437

 Score =  145 bits (366), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 71/344 (20%), Positives = 121/344 (35%), Gaps = 53/344 (15%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D         +        LRP+ L E  GQ        +      +R+  L  ++F 
Sbjct: 1   MSDLFTSAGLEGAAPRPLADRLRPQRLAEVVGQEHLTGPDGILTRMIDSRS--LGSLIFW 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIH 115
           GPPG GKTT+A+++A E  ++F   S        + K  + A     +    +LF+DEIH
Sbjct: 59  GPPGTGKTTVARLLAHETDLHFEQVSAIFTGVAELKKVFEAARGRRAVGRGTLLFVDEIH 118

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P MED  + L+    E PS       LSR  ++   +            
Sbjct: 119 RFNKAQQDSFLPVMEDGTVTLIGATTENPSFELNAALLSRARVLTFRS------------ 166

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                     + + +  ++ R  +L           E A       R+A    R     A
Sbjct: 167 ---------LDDDAIGRLLSRAEEL---EGKPLPLDEEARAVL--VRLADGDGRASLTLA 212

Query: 234 EVAHAKTITREIADAALLRLAIDKMG--FDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
           E A       E+ D A L+  + +    +D+ +  +  +              ISA    
Sbjct: 213 EEAWRAARPGEVFDGAKLQEIVQRRAPIYDKSEDGHYNL--------------ISALHKS 258

Query: 292 PRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            R +  D    ++ +       P    R L+ +A + +G   P 
Sbjct: 259 IRGSDPDAALYWLARMIDAGENPLFLARRLVRMASEDIGNADPQ 302


>gi|269139542|ref|YP_003296243.1| putative DNA recombination-associated ATPase RarA [Edwardsiella
           tarda EIB202]
 gi|267985203|gb|ACY85032.1| putative DNA recombination-associated ATPase RarA [Edwardsiella
           tarda EIB202]
 gi|304559431|gb|ADM42095.1| AAA family ATPase [Edwardsiella tarda FL6-60]
          Length = 447

 Score =  145 bits (366), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 72/342 (21%), Positives = 114/342 (33%), Gaps = 42/342 (12%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M +     S+N  Q     + +RP  LE++ GQ    +  K    A  A    L  ++  
Sbjct: 1   MSNLSLDFSQNAFQ--PLAARMRPTALEQYIGQRHLLAAGKPLPRAILAGH--LHSMILW 56

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIH 115
           GPPG GKTTLA+++AR         S        I +A + A    +   R +LF+DE+H
Sbjct: 57  GPPGTGKTTLAELIARYGHAEVERISAVTSGIKEIREAIERARHNRDAGRRTILFVDEVH 116

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P +ED  +  +    E PS       LSR  +             +   
Sbjct: 117 RFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKALDAQDIAQV--- 173

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                      ++   T  +RG     L +  E    +A    G  R A   L  + D  
Sbjct: 174 -----------VQQAMTDRERGYGAQDLTLPTETRDALAELVSGDARRALNTLEMMADMV 222

Query: 234 EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
           E          +     +         +  D  Y               + ISA     R
Sbjct: 223 EADAQGQRVLTLDLLRSVSGERSARFDNHGDRYY---------------DLISALHKSVR 267

Query: 294 DAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +  D    +  +       P    R L+ IA + +G   P 
Sbjct: 268 GSAPDAALYWYARIITAGGDPLYVARRLLAIASEDVGNADPR 309


>gi|261415680|ref|YP_003249363.1| AAA ATPase central domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261372136|gb|ACX74881.1| AAA ATPase central domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302326489|gb|ADL25690.1| ATPase, AAA family protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 431

 Score =  145 bits (366), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 73/328 (22%), Positives = 124/328 (37%), Gaps = 48/328 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP+ L+EF GQ +      +  ++ +   +++  ++F GPPG GKT+LA V+ +
Sbjct: 4   PLAERLRPQNLDEFLGQNKILGQQSLLRKSLE--NDSIPSMIFWGPPGCGKTSLAHVIRQ 61

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAME 130
                F + S  V +   ++  +L +           +LFIDEIHR +   ++ L  A+E
Sbjct: 62  HTKKRFVALSA-VASGVKEVKEVLADARQMKKAFMDTILFIDEIHRFNKGQQDALLGAVE 120

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           D  + L+    E P        LSR  LI        L  PL       +  +       
Sbjct: 121 DGTVTLIGATTENPGFEVNGALLSRCQLI--------LFAPLSKEDLRTLIFSALRDHP- 171

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV-RDFAEVAHAKTITREIAD 247
                RG +L  + V D    ++  +S G  R     L  + ++  +         E   
Sbjct: 172 -----RGLQLKDVEVEDSVVDKLIAQSEGDARFLLNQLEWIGKNLGDNKKIDEKLLEEFQ 226

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
                L  DK G +  +L                   ISA     R +  D    ++ + 
Sbjct: 227 Y-KKPLRYDKSGEEHYNL-------------------ISALHKSVRGSDPDAALYWLHRM 266

Query: 308 GFIQRTPRG--RLLMPIAWQHLGIDIPH 333
                 PR   R LM ++ + +G+  P+
Sbjct: 267 LQGGEDPRFILRRLMRMSMEDVGLADPN 294


>gi|183601785|ref|ZP_02963155.1| recombination factor protein RarA [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219683685|ref|YP_002470068.1| recombination factor protein RarA [Bifidobacterium animalis subsp.
           lactis AD011]
 gi|241190717|ref|YP_002968111.1| recombination factor protein RarA [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|241196123|ref|YP_002969678.1| recombination factor protein RarA [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|183219391|gb|EDT90032.1| recombination factor protein RarA [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219621335|gb|ACL29492.1| AAA ATPase, central domain protein [Bifidobacterium animalis subsp.
           lactis AD011]
 gi|240249109|gb|ACS46049.1| recombination factor protein RarA [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|240250677|gb|ACS47616.1| recombination factor protein RarA [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|295793706|gb|ADG33241.1| recombination factor protein RarA [Bifidobacterium animalis subsp.
           lactis V9]
          Length = 504

 Score =  145 bits (366), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 79/356 (22%), Positives = 132/356 (37%), Gaps = 62/356 (17%)

Query: 2   MDREGLLSRNVSQE--DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARA----EALD 55
           M  +   + + S+E        +RP TL+E  GQ    +        A + +     A  
Sbjct: 1   MTNDLFAASDPSEEVVRPLAVRMRPTTLDEVVGQRHVLAPGSPLRRLADSASTGSLTAPS 60

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DV 108
            V+  GPPG+GKTTLA +VA++ G  +   S  V +   DL  +L    +R        V
Sbjct: 61  SVILFGPPGVGKTTLAHIVAKQSGRQYEELSA-VTSGVKDLREVLRRAHERLVSQGKETV 119

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLL 166
           LFIDE+HR S   ++ L P++E+  +  +    E PS   +K  LSR  ++   +     
Sbjct: 120 LFIDEVHRFSKSQQDALLPSVENRDVTFIAATTENPSFSVIKPLLSRSVVVKLESLEPEE 179

Query: 167 TNPLQDR-------FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTP 219
              + +R        G  +R+    ++ +  +    A+ +   +   A       S    
Sbjct: 180 LRTVIERAVSNPRGLGGKVRVQGDAVDGIIRLAGGDARKSLTILEAAAGAVDESGSNVPA 239

Query: 220 RIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGP 279
            I   ++  V D A V                    D+ G D  D+              
Sbjct: 240 EITTDVVSTVMDVAAVR------------------YDRNGDDHYDV-------------- 267

Query: 280 VGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                ISA +   R +  D    Y+ +       PR   R +M  A + +G+  P 
Sbjct: 268 -----ISAFIKSMRGSDVDATLHYLARMIRAGEDPRFIARRIMIAAAEEVGMAAPQ 318


>gi|260435731|ref|ZP_05789701.1| recombination factor protein RarA/unknown domain fusion protein
           [Synechococcus sp. WH 8109]
 gi|260413605|gb|EEX06901.1| recombination factor protein RarA/unknown domain fusion protein
           [Synechococcus sp. WH 8109]
          Length = 722

 Score =  145 bits (366), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 78/332 (23%), Positives = 129/332 (38%), Gaps = 51/332 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RPRTLEEF GQ    ++ ++   A KA  + + +++  GPPG+GKTTLA+++A 
Sbjct: 20  PLADRMRPRTLEEFEGQSGILADGRLLRRAIKA--DRVGNLILHGPPGVGKTTLARIIAN 77

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAM 129
               +F S +  V+A   DL   +     R        +LFIDE+HR +   ++ L P +
Sbjct: 78  HTRAHFSSLNA-VLAGIKDLRIEVDAARQRLERHGLRTILFIDEVHRFNSAQQDALLPWV 136

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E+  + L+    E P     K  +SR  L             L  R              
Sbjct: 137 ENGTVILIGATTENPYFEVNKALVSRSRLFRLLPLEPEDLQRLLQR-------------- 182

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT--ITREI 245
                +RG     + ++ +AA  +   + G  R     L    + +E        I   I
Sbjct: 183 ALADDERGYGYRSIDISSDAANHLVDVAGGDARSLLNALELAVESSEPDGDGVIQINLAI 242

Query: 246 ADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           A+ ++ + A   DK G    D                   TISA +   R +  D    +
Sbjct: 243 AEESIQQRAVLYDKHGDAHYD-------------------TISAFIKSLRGSDADAALFW 283

Query: 304 MIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           + +       PR   R ++  A + +G+  P 
Sbjct: 284 LARMVEAGENPRFIFRRMLIAAGEDIGLADPQ 315


>gi|295706706|ref|YP_003599781.1| ATPase, AAA family [Bacillus megaterium DSM 319]
 gi|294804365|gb|ADF41431.1| ATPase, AAA family [Bacillus megaterium DSM 319]
          Length = 425

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 74/324 (22%), Positives = 123/324 (37%), Gaps = 50/324 (15%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            +RP  L++  GQ       K+     KA    L  ++  GPPG+GKTT+A  +A+    
Sbjct: 9   RMRPTHLDDVIGQQHLVGKDKMIYRMVKANH--LSSMILYGPPGVGKTTIATAIAKTTNT 66

Query: 81  NFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
            FR  +  V  K   ++ A    +  + +L +DE+HRL    ++ L P +E+  + +++G
Sbjct: 67  AFRQLNAVVNNKKDMEIVAEEAKMSGKVILLLDEVHRLDKAKQDFLLPYLENGMI-ILIG 125

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA--- 196
              S     IN                   ++ R  I   L     +D+K  + R     
Sbjct: 126 ATTSNPYHAIN-----------------PAIRSRCQI-FELKSLTPDDIKMALTRALNDS 167

Query: 197 ----KLTGLAVTDEAACEIAMRSRGTPRIAGRLLR-RVRDFAEVAHAKTITREIADAALL 251
                   + V D+A    A    G  R A   L   V    E      IT + A+  L 
Sbjct: 168 SNGFGDRKIIVEDDAMNHFANSCNGDVRSALNALELAVLSTGESDGKIVITLQTAEECLQ 227

Query: 252 R--LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           +   + DK G    D+  L+   ++  G  V      A L              +I+ G 
Sbjct: 228 QKYFSHDKNGDAHYDV--LSAFQKSIRGSDVN-----AAL---------HYLGRLIEAGD 271

Query: 310 IQRTPRGRLLMPIAWQHLGIDIPH 333
           +      R L+ IA++ +G+  P 
Sbjct: 272 LISIN--RRLLVIAYEDIGLADPD 293


>gi|281208871|gb|EFA83046.1| putative helicase [Polysphondylium pallidum PN500]
          Length = 758

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 71/338 (21%), Positives = 123/338 (36%), Gaps = 69/338 (20%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP +L+ F GQ E   N  +F E  K  + A    +  GPPG GKTT+A++V +
Sbjct: 300 PLSEKMRPLSLDFFIGQEELL-NGSMFYEMIK--SGAPPSFILWGPPGSGKTTIAKLVEK 356

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTN--------LEDRDVLFIDEIHRLSIIVEEILYPA 128
               +F   S  V +   D+  ++T         L+ + +LFIDEIHR +   ++ L P 
Sbjct: 357 NTSSHFVMLSA-VHSGVADMKQVVTQAIARESGLLKQKTILFIDEIHRFTKSQQDFLLPY 415

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           +E+    L+    E PS       LSR  +                             +
Sbjct: 416 VENGTFTLIGATTENPSFEVNGALLSRCRVFKL---------------------QKLSQQ 454

Query: 187 DLKTIVQRGAKLTG------LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            ++TI++R            + V ++    ++  S G  R A  ++  V     +     
Sbjct: 455 HIQTILKRAIDSYCKYTSKKITVDEQGLDSLSSFSDGDARTALNVIEMV-----IKGTPG 509

Query: 241 ITREIADAAL------LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRD 294
            T  I+   L           DK G    +   ++ + ++  G      T          
Sbjct: 510 DTIHISKEKLSELTQTKTFLHDKKGESHYN--MISALHKSVRGSDANASTYWL-----TR 562

Query: 295 AIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
            +E   EP  I           R ++ +A + +G+  P
Sbjct: 563 MLESGTEPLFI----------ARRMIRMASEDIGLADP 590


>gi|325298651|ref|YP_004258568.1| AAA ATPase central domain-containing protein [Bacteroides
           salanitronis DSM 18170]
 gi|324318204|gb|ADY36095.1| AAA ATPase central domain protein [Bacteroides salanitronis DSM
           18170]
          Length = 424

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 76/330 (23%), Positives = 128/330 (38%), Gaps = 53/330 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+TL+++ GQ        V      A    +   +  GPPG+GKTTLAQ++A 
Sbjct: 4   PLAERMRPKTLDDYIGQKHLVGEGAVLRRMIDA--GRISSFILWGPPGVGKTTLAQIIAN 61

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAM 129
            L V F + S  V +   ++  ++    +         +LFIDEIHR S   ++ L  A+
Sbjct: 62  RLEVPFYTLSA-VTSGVKEVRDVIEKARNGRFFSSQSPILFIDEIHRFSKSQQDSLLGAV 120

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E   + L+    E PS   ++  LSR  L         +  PL+    + +  +  E + 
Sbjct: 121 ETGVVTLIGATTENPSFEVIRPLLSRCQL--------YVLKPLEKDDLLELLHHALEKDS 172

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           +        K   + + +  A  +   S G  R    +L  V + A+ +    IT E   
Sbjct: 173 I-------LKEKHIELEETDA--MLRYSGGDARKLLNILELVVE-ADDSEPVVITDEKVV 222

Query: 248 AALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
             L +   A DK G    D+                   ISA +   R +  D    ++ 
Sbjct: 223 ERLQQNPLAYDKDGEMHYDI-------------------ISAFIKSIRGSDPDGALYWLA 263

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +       P    R L+  A + +G+  P+
Sbjct: 264 RMVEGGEDPAFIARRLVISASEDIGLANPN 293


>gi|291516212|emb|CBK69828.1| Recombination protein MgsA [Bifidobacterium longum subsp. longum
           F8]
          Length = 444

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 87/342 (25%), Positives = 128/342 (37%), Gaps = 70/342 (20%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIE----AAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
            +RPRTL+E  GQ +              A+K    A   V+  GPPG+GKTTLA +VA 
Sbjct: 8   RMRPRTLDEVIGQTQVLGQGSPLRRLANPASKGSLTAPSSVILFGPPGVGKTTLATIVAG 67

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAM 129
           + G  F   S  V +   D+  +LT   +R        VLFIDE+HR S   ++ L PA+
Sbjct: 68  QSGRVFEELSA-VTSGVKDVRDVLTRAHERLVSRGQETVLFIDEVHRFSKSQQDALLPAV 126

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E+  +  +    E PS   +K  LSR  ++   +                      E + 
Sbjct: 127 ENRDVTFIGATTENPSFSIIKPLLSRSVVVKLES---------------------LEPDQ 165

Query: 188 LKTIVQRGAKLTG-----LAVTDEAACEIAMRSRGTPRIAGRLLRRVR-----DFAEVAH 237
           L  +VQR           +  TDEA  +I   + G  R +  +L         D A    
Sbjct: 166 LIELVQRALTDDRGLRGEVKATDEAIADIVRMAGGDARKSLTILEAAAGAVTGDEARKKG 225

Query: 238 AKTITREIADAALLRL----AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
           A+         A +        DK G D  D+                   ISA +   R
Sbjct: 226 ARRPIITPEIVATVMDTATVRYDKDGDDHYDV-------------------ISAFIKSMR 266

Query: 294 DAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +  D    Y+ +       PR   R +M  A + +G+  P 
Sbjct: 267 GSDPDAAIHYLARMLKAGEDPRFIARRIMIAASEEVGMAAPQ 308


>gi|14714682|gb|AAH10482.1| Werner helicase interacting protein 1 [Mus musculus]
          Length = 660

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 67/347 (19%), Positives = 127/347 (36%), Gaps = 37/347 (10%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLG 66
           R + +       +RP TL+++ GQ  A      L+  +EA +     +  ++  GPPG G
Sbjct: 214 RQMLEGKPLADKMRPDTLQDYIGQSRAVGQETLLRSLLEANE-----IPSLILWGPPGCG 268

Query: 67  KTTLAQVVARELGVNFRST--SGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRL 117
           KTTLA ++A     +           AK  D+  ++   +        + +LFIDEIHR 
Sbjct: 269 KTTLAHIIANNSKKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRF 328

Query: 118 SIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
           +   ++   P +E   + L+    E PS +     LSR  +I            +  R  
Sbjct: 329 NKSQQDTFLPHVECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAI 388

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLA---VTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
             + ++  +       +   +  +      + D+A   +A  S G  R     L+     
Sbjct: 389 NSLGIHVLDSSRPTDPLSHSSNCSSEPSVFIEDKAVDTLAYLSDGDARTGLNGLQLAV-L 447

Query: 233 AEVAHAKTITRE-----IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISA 287
           A ++  K   ++          L+     K G  +  + Y      ++         ISA
Sbjct: 448 ARLSSRKMFCKKSGQTYSPSRVLITENDVKEGLQRSHILYDRAGEEHYNC-------ISA 500

Query: 288 GLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
                R + ++    ++ +       P    R L+  A + +G+  P
Sbjct: 501 LHKAMRGSDQNASLYWLARMLEGGEDPLYVARRLVRFASEDIGLADP 547


>gi|313891986|ref|ZP_07825587.1| ATPase, AAA family [Dialister microaerophilus UPII 345-E]
 gi|313119629|gb|EFR42820.1| ATPase, AAA family [Dialister microaerophilus UPII 345-E]
          Length = 435

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 77/326 (23%), Positives = 119/326 (36%), Gaps = 43/326 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP  LE+  GQ  +  +     +      + +  +L  GPPG GKTT+A+V+A 
Sbjct: 15  PLADRMRPDKLEDIVGQKNSIGSQSFLYKMICK--DLVPSLLLFGPPGCGKTTIAKVIAS 72

Query: 77  ELGVNFRSTSGPVIAKAGDLA-------ALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
               NF   +        ++          L     R +LFIDEIHR +   +++L P  
Sbjct: 73  TTKSNFIKFNATE-NGIKEIRLIAIKAEENLKFYNKRTILFIDEIHRFNKSQQDVLLPYT 131

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ED  L L+    E P     +  LSR  L+  T         L     I I  N    +D
Sbjct: 132 EDGTLTLIGATTENPYFSLNRALLSRIRLVRLTE--------LSIDDIISILKNALTNKD 183

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
                 +G         +++  EIA+ + G  RIA  LL +V          T       
Sbjct: 184 ------KGLGKYNYEYNEKSLKEIAVFANGDTRIALNLLEQVTSLVAPNGTITENLVKEV 237

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           A       DK G +  D+   +   ++  G  V      A L      IE   +P  I  
Sbjct: 238 AGEQIFLYDKKGDNHYDVA--SAFIKSMRGSDVN-----AALHYLSRMIESGEKPEFI-- 288

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
                    R ++  A + +G+  P+
Sbjct: 289 --------SRRIIISAAEDVGLANPN 306


>gi|149915873|ref|ZP_01904397.1| ATPase, AAA family protein [Roseobacter sp. AzwK-3b]
 gi|149810196|gb|EDM70042.1| ATPase, AAA family protein [Roseobacter sp. AzwK-3b]
          Length = 437

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 74/330 (22%), Positives = 116/330 (35%), Gaps = 58/330 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRPR L +  GQ +           A   A +L  ++F GPPG+GKTT+A+++A 
Sbjct: 19  PLADRLRPRKLADVIGQAQLLGPEAPL--GAMLEAGSLSSLVFWGPPGVGKTTIARLLAD 76

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
           E  ++F   S        + K  + A          +LF+DEIHR +   ++   P MED
Sbjct: 77  ETDLHFVQISAIFSGVAELKKVFEQARHRRANGQGTLLFVDEIHRFNKAQQDSFLPHMED 136

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             L L+    E PS       LSR  ++                           + DL+
Sbjct: 137 GTLLLVGATTENPSFELNAALLSRAQVLVL---------------------ERLSLADLE 175

Query: 190 TIVQRGAKLT--GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            + QR        L +   A   +   + G  R    L+ +V   A       +      
Sbjct: 176 RLAQRAEAELGRPLPLDGPAREALLEMADGDGRALLNLIEQV---AAWRVEGKLDTAALT 232

Query: 248 AALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
             L+R A   DK G +  +L                   ISA     R +  D    +  
Sbjct: 233 GRLMRRAAKYDKSGDEHYNL-------------------ISALHKSVRGSDPDAALYWYA 273

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +       PR   R +  +A + +G+  P 
Sbjct: 274 RMLTGGEDPRYLARRITRMAVEDIGLADPQ 303


>gi|329121015|ref|ZP_08249646.1| replication-associated recombination protein A [Dialister
           micraerophilus DSM 19965]
 gi|327471177|gb|EGF16631.1| replication-associated recombination protein A [Dialister
           micraerophilus DSM 19965]
          Length = 435

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 76/326 (23%), Positives = 119/326 (36%), Gaps = 43/326 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP  LE+  GQ  +  +     +      + +  +L  GPPG GKTT+A+V+A 
Sbjct: 15  PLADRMRPDKLEDIVGQKNSIGSQSFLYKMICK--DLVPSLLLFGPPGCGKTTIAKVIAS 72

Query: 77  ELGVNFRSTSGPVIAKAGDLA-------ALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
               NF   +        ++          L     + +LFIDEIHR +   +++L P  
Sbjct: 73  TTKSNFIKFNATE-NGIKEIRLIAIKAEENLKFYNKKTILFIDEIHRFNKSQQDVLLPYT 131

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ED  L L+    E P     +  LSR  L+  T         L     I I  N    +D
Sbjct: 132 EDGTLTLIGATTENPYFSLNRALLSRIRLVRLTE--------LSIDDIISILKNALTNKD 183

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
                 +G         +++  EIA+ + G  RIA  LL +V          T       
Sbjct: 184 ------KGLGKYNYEYNEKSLKEIAVFANGDTRIALNLLEQVTSLVAPNGTITENLVKEV 237

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           A       DK G +  D+   +   ++  G  V      A L      IE   +P  I  
Sbjct: 238 AGEQIFLYDKKGDNHYDVA--SAFIKSMRGSDVN-----AALHYLSRMIESGEKPEFI-- 288

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
                    R ++  A + +G+  P+
Sbjct: 289 --------SRRIIISAAEDVGLANPN 306


>gi|319651670|ref|ZP_08005797.1| ATPase [Bacillus sp. 2_A_57_CT2]
 gi|317396737|gb|EFV77448.1| ATPase [Bacillus sp. 2_A_57_CT2]
          Length = 421

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 72/325 (22%), Positives = 120/325 (36%), Gaps = 51/325 (15%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            +RPRT++E  GQ    S  K+     +A+   L  ++  GPPG+GKT++A  +A     
Sbjct: 9   RMRPRTIDEIIGQEHLVSEGKIIYRMVQAKQ--LSSMILYGPPGIGKTSIASAIAGSTKY 66

Query: 81  NFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137
            FR+ +     K   ++ A    +  + +L +DE+HRL    ++ L P +E+  + L+  
Sbjct: 67  AFRTLNAVTNNKKDMEVVAAEAKMSGKVILLLDEVHRLDKGKQDFLLPYLENGSITLIGA 126

Query: 138 VGEGPSARSVKINLSRFT-----LIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
               P         SR        ++A      LT  L D+                   
Sbjct: 127 TTSNPYHAINPAIRSRCQIFELKPLSADDIKKALTRALLDK------------------- 167

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE----IADA 248
           +RG       VTD+A   +A  S G  R +   L       +      I  +        
Sbjct: 168 ERGLGNRQTEVTDDALTHLATASNGDVRSSLNALELAVLSTKEDEEGIIKIDLSVAEECI 227

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
                  DK G    D+  L+   ++  G  V      A L              +I+ G
Sbjct: 228 QRKSFTHDKDGDAHYDV--LSGFQKSIRGSDVN-----AAL---------HYLGRLIEAG 271

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIPH 333
            +Q     R L+ IA++ +G+  P 
Sbjct: 272 DLQSIS--RRLLVIAYEDIGLASPQ 294


>gi|87125265|ref|ZP_01081111.1| putative ATPase, AAA family protein [Synechococcus sp. RS9917]
 gi|86167034|gb|EAQ68295.1| putative ATPase, AAA family protein [Synechococcus sp. RS9917]
          Length = 738

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 77/328 (23%), Positives = 128/328 (39%), Gaps = 43/328 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRPR L++F GQ    +  ++   A  A  + + ++L  GPPG+GKTTLA+++A 
Sbjct: 19  PLADRLRPRDLDDFVGQGAILAEGRLLRRAIAA--DRVGNLLLHGPPGVGKTTLARIIAN 76

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAM 129
               +F S +  V+A   +L A +     R        +LFIDE+HR +   ++ L P +
Sbjct: 77  HTRAHFSSLNA-VLAGVKELRAEVDAARQRLERHGLRTILFIDEVHRFNSAQQDALLPWV 135

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E+  L L+    E P     K  +SR  L           + L  R              
Sbjct: 136 ENGTLTLIGATTENPYFEVNKALVSRSRLFRLQALEAEDLHRLLQR-------------- 181

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
             +  +RG     ++VT EAA  +   + G  R     L    +        T+  ++A 
Sbjct: 182 ALSDSERGYGNRAVSVTAEAAAHLVDVANGDARSLLNALELAVESTPTDDDGTVRIDLAI 241

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           A        +    Q  + Y          G    +TISA +   R +  D    ++ + 
Sbjct: 242 A--------EESIQQRAVLY-------DKQGDAHFDTISAFIKSLRGSDPDAALFWLARM 286

Query: 308 GFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                 PR   R ++  A + +G+  P 
Sbjct: 287 VEAGENPRFIFRRMLIAAGEDVGLADPQ 314


>gi|294341019|emb|CAZ89414.1| putative Holliday junction ATP-dependent DNA helicase ruvB
           [Thiomonas sp. 3As]
          Length = 470

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 68/327 (20%), Positives = 108/327 (33%), Gaps = 50/327 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP  L E  GQ       K    A + R   L  +LF GPPG+GKTTLA+++A 
Sbjct: 32  PLAERLRPHHLGEVVGQRHLLGPGKPLRVAFETR--RLHSMLFWGPPGVGKTTLARLMAD 89

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAME 130
               +F   S  V+A   D+   +             ++F+DE+HR +   ++   P +E
Sbjct: 90  AFDADFLPLSA-VLAGVKDIRDAVAQAQAAQQRGRATIVFVDEVHRFNKSQQDAFLPHVE 148

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
                 +    E PS       LSR  +             L  R      +   E    
Sbjct: 149 SGLFTFIGATTENPSFEVNSALLSRAVVYVLEPLDADDLRLLLQRALAGGGVEAIEPAAQ 208

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           + +++                     + G  R     L      A  A   T+T ++ + 
Sbjct: 209 ERLIR--------------------HADGDARRLLGALELALQAAVRAAQTTLTADLLEQ 248

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L                    + R   GG    + ISA     R +  D    +  +  
Sbjct: 249 TLGA-----------------TLLRFDKGGEQTYDLISALHKSVRGSDVDASLYWFARML 291

Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIPH 333
                PR   R L+ +A + +G+  P 
Sbjct: 292 EGGADPRYLARRLIRMAVEDIGLADPK 318


>gi|16125532|ref|NP_420096.1| recombination factor protein RarA [Caulobacter crescentus CB15]
 gi|221234279|ref|YP_002516715.1| recombination factor protein RarA [Caulobacter crescentus NA1000]
 gi|13422618|gb|AAK23264.1| ATPase, AAA family [Caulobacter crescentus CB15]
 gi|220963451|gb|ACL94807.1| ATPase, AAA family [Caulobacter crescentus NA1000]
          Length = 433

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 70/341 (20%), Positives = 107/341 (31%), Gaps = 50/341 (14%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D                  LRP++L+E  GQ             A AR   L  ++  
Sbjct: 1   MSDLFQAAGLTPHAPSPLADRLRPQSLDEVVGQQHLLGPEGPIGRMAAAR--RLASMILW 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIH 115
           GPPG GKTT+A+++A+  G  F   S        + KA + A          +LF+DEIH
Sbjct: 59  GPPGTGKTTIARLLAKAGGYEFMQISAVFSGVADLKKAFEQARARRMAGQSTLLFVDEIH 118

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P +E+  + L+    E PS       LSR  +             L  R
Sbjct: 119 RFNRAQQDGFLPFVEEGIVTLVGATTENPSFELNGALLSRCQVFVLKRLTEESLELLLQR 178

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                                 A+   L +  EA   +   + G  R    L   +    
Sbjct: 179 -------------------AEAAENRPLPIDAEARSALVAMADGDGRYLLTLAETLFSIG 219

Query: 234 EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
                             R A DK   +  +L                   ISA     R
Sbjct: 220 TDTPLNPTQLGQFLQ-KRRPAYDKDREEHYNL-------------------ISALHKSVR 259

Query: 294 DAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
            +  D    ++ +       P    R L+ +A + +G   P
Sbjct: 260 GSDPDAALYWLARMLEGGEDPLFIARRLVRMASEDIGAADP 300


>gi|52141108|ref|YP_085721.1| recombination factor protein RarA [Bacillus cereus E33L]
 gi|51974577|gb|AAU16127.1| ATPase, AAA family [Bacillus cereus E33L]
          Length = 428

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 76/327 (23%), Positives = 123/327 (37%), Gaps = 43/327 (13%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           +      +RP  ++E  GQ       K+     +A       ++  GPPG GKT++A  +
Sbjct: 2   KQPLAHRMRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           A   G  FR  +  V     D+  ++   +     VL +DE+HRL    ++ L P +E  
Sbjct: 60  AGSTGTPFRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESG 118

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
            L L+      P         SR        ++  L    +D   I ++    + E    
Sbjct: 119 LLTLIGATTSNPFHAINSAIRSRC-------QIFELHALTEDDLLIGLKRALEDKE---- 167

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR--DFAEVAHAKTITREIADA 248
              +G     + VT EA    A  S G  R A   L       F     A  IT EIA+ 
Sbjct: 168 ---KGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEE 224

Query: 249 ALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
            L + +   DK G    D+  L+   ++  G  V              A+  L    +I+
Sbjct: 225 CLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDV------------NAALHYLAR--LIE 268

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            G +Q     R L+ +A++ +G+  P 
Sbjct: 269 AGDLQSIS--RRLLIMAYEDIGLASPQ 293


>gi|153003645|ref|YP_001377970.1| recombination factor protein RarA [Anaeromyxobacter sp. Fw109-5]
 gi|152027218|gb|ABS24986.1| AAA ATPase central domain protein [Anaeromyxobacter sp. Fw109-5]
          Length = 444

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 80/345 (23%), Positives = 125/345 (36%), Gaps = 51/345 (14%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD     +            +RPR LE+F GQ            A +A  + +  ++  G
Sbjct: 1   MDLFDRAAERDESGKPLAERMRPRRLEDFVGQEHVLGRDTGLRRAIEA--DQVPSLIVWG 58

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEI 114
           PPG GKTTLA++VA+  G  F   S  V+    ++  ++            R +LF+DEI
Sbjct: 59  PPGTGKTTLARIVAKRTGAEFVPFSA-VLGGVKEIREIVAAARDRRRMHRKRTILFVDEI 117

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++   P +ED  + L+    E PS       LSR        RV  L    ++
Sbjct: 118 HRFTKAQQDAFLPHVEDGTITLIGATTENPSFEVNAALLSRC-------RVVTLRALTEE 170

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
                +       E L   V         ++  EA   IA  + G  R A   L      
Sbjct: 171 EVAALLDRAAAAPEGLAGAV---------SLEPEARAAIARYAYGDARRALNALEVAAAA 221

Query: 233 AEVAHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
             +A    +TR  A+ AL +     DK G +                       +SA + 
Sbjct: 222 VRLAGRAAVTRADAEEALQQRTVLYDKAGEEHY-------------------NVVSAFIK 262

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPRG--RLLMPIAWQHLGIDIPH 333
             R +  D    Y+++       PR   R ++  A + +G   P 
Sbjct: 263 SMRGSDPDAAVYYLVRMLEGGEEPRFVLRRMVIFASEDVGNADPQ 307


>gi|86749444|ref|YP_485940.1| recombination factor protein RarA [Rhodopseudomonas palustris HaA2]
 gi|86572472|gb|ABD07029.1| Recombination protein MgsA [Rhodopseudomonas palustris HaA2]
          Length = 444

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 73/324 (22%), Positives = 111/324 (34%), Gaps = 53/324 (16%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            LRPR L +  GQ                R   L  ++F GPPG GKTT+A+++A    +
Sbjct: 29  RLRPRVLADVVGQDHILGPDGALTRMLATR--TLGSLVFWGPPGTGKTTVARLLADATEL 86

Query: 81  NFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           +F   S        + K  D A     +    +LF+DE+HR +   ++   P MED  + 
Sbjct: 87  HFEQISAVFSGVADLKKVFDAARARREMGRGTLLFVDEVHRFNKAQQDSFLPVMEDGTVV 146

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           L+    E PS       LSR                   R  +   L+   IE L    +
Sbjct: 147 LVGATTENPSFELNAALLSR------------------ARVLVFQSLDAAAIEKLFAHAE 188

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
             A+   L +  EA   +   + G  R +  L   V   A     +          L R 
Sbjct: 189 -AAEGRKLPLDAEARAVLVRMADGDGRASLTLAEEVWRSA--RDGEIFNAAQLQDILQRR 245

Query: 254 A--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
           A   DK      +L                   ISA     R +  D    Y+ +     
Sbjct: 246 APIYDKSADGHYNL-------------------ISALHKSVRGSDPDAALYYLCRMFDAG 286

Query: 312 RTP--RGRLLMPIAWQHLGIDIPH 333
             P    R ++ +A + +G+  P 
Sbjct: 287 EDPLFLARRVVRMAVEDIGLADPQ 310


>gi|296136850|ref|YP_003644092.1| AAA ATPase central domain protein [Thiomonas intermedia K12]
 gi|295796972|gb|ADG31762.1| AAA ATPase central domain protein [Thiomonas intermedia K12]
          Length = 470

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 68/327 (20%), Positives = 108/327 (33%), Gaps = 50/327 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP  L E  GQ       K    A + R   L  +LF GPPG+GKTTLA+++A 
Sbjct: 32  PLAERLRPHHLGEVVGQRHLLGPGKPLRVAFETR--RLHSMLFWGPPGVGKTTLARLMAD 89

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAME 130
               +F   S  V+A   D+   +             ++F+DE+HR +   ++   P +E
Sbjct: 90  AFDADFLPLSA-VLAGVKDIRDAVAQAQAAQQRGRATIVFVDEVHRFNKSQQDAFLPHVE 148

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
                 +    E PS       LSR  +             L  R      +   E    
Sbjct: 149 SGLFTFIGATTENPSFEVNSALLSRAVVYVLEPLDADDLRLLLQRALAGGGVEAIEPAAQ 208

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           + +++                     + G  R     L      A  A   T+T ++ + 
Sbjct: 209 ERLIR--------------------HADGDARRLLGALELALQAAVRAAQTTLTADLLEQ 248

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L                    + R   GG    + ISA     R +  D    +  +  
Sbjct: 249 TLGA-----------------TLLRFDKGGEQTYDLISALHKSVRGSDVDASLYWFARML 291

Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIPH 333
                PR   R L+ +A + +G+  P 
Sbjct: 292 EGGADPRYLARRLIRMAVEDIGLADPK 318


>gi|85712404|ref|ZP_01043454.1| Uncharacterized ATPase related to the helicase subunit of the
           Holliday junction resolvase [Idiomarina baltica OS145]
 gi|85693847|gb|EAQ31795.1| Uncharacterized ATPase related to the helicase subunit of the
           Holliday junction resolvase [Idiomarina baltica OS145]
          Length = 451

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 64/343 (18%), Positives = 111/343 (32%), Gaps = 46/343 (13%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M    L            + +R ++L+E+ GQ    +  K   +A       L  ++  G
Sbjct: 1   MTNGELAFEEEHDFRPLAARMRAQSLDEYVGQTHLLAEGKPLWQAV--AQGRLHSMILWG 58

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEI 114
           PPG GKTTLA+++A          S  + +   ++   +   + R        +LF+DE+
Sbjct: 59  PPGTGKTTLAELMATSADATVSRLSA-ITSGVKEIRQAIDEAKQRAKQQGRRTLLFVDEV 117

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++   P +ED  +  +    E P        LSR  +    +        L  
Sbjct: 118 HRFNKSQQDAFLPFIEDGTVIFVGATTENPGFELNNALLSRARVYRLESIKAEDLRALLQ 177

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R                   +RG     + +T EA   +   + G  R     L    D+
Sbjct: 178 R--------------TLQDPERGLGARHIRLTPEAEDRLLDLAGGDARRMLNYLEVAADY 223

Query: 233 AEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEP 292
                A+  T  +  A   + A      D                     + +SA     
Sbjct: 224 LSEGEAELNTELLLHAVGEQQAAFDNKGDH------------------FYDILSAFHKSV 265

Query: 293 RDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           R +  D    +  +       P    R L+ IA + +G   P 
Sbjct: 266 RGSSPDGALYWYARILVGGGDPLIVARRLLAIASEDIGNADPR 308


>gi|313157357|gb|EFR56780.1| recombination factor protein RarA [Alistipes sp. HGB5]
          Length = 424

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 72/328 (21%), Positives = 118/328 (35%), Gaps = 50/328 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP+T++++ GQ        VF +  +     +   +  GPPG+GKTTLA++VA 
Sbjct: 4   PLAERLRPKTIDDYIGQEHLVGKNGVFRKFFETGN--VPSFILWGPPGVGKTTLAKIVAT 61

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAM 129
           +L   F + S  V +   D+  ++ + + +         LFIDEIHR +   ++ L  A+
Sbjct: 62  QLERPFFTLSA-VTSGVKDVREVIESAKKQRFFDAKPPFLFIDEIHRFNKSQQDSLLGAV 120

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E   + L+    E PS   +   LSR  +             L DR              
Sbjct: 121 EQGTVTLIGATTENPSFEVISPLLSRCQVYILRPMEDKDLQTLLDR-------------A 167

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           L T  +   K   + V    A      S G  R    +L  +    +     T       
Sbjct: 168 LTTDAE--LKAREVEVRQTGALF--KFSGGDARKLLNILDILAGATDGKLTITDQYVTDC 223

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
                   DK G    D+                   ISA +   R +  +    Y+ + 
Sbjct: 224 LQQNIALYDKNGEQHYDV-------------------ISAFIKSVRGSDPNAAIYYLARM 264

Query: 308 GFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                 PR   R L+ +A + +G+  P+
Sbjct: 265 LAGGEEPRFLARRLVILASEDIGLANPN 292


>gi|237815625|ref|ZP_04594622.1| recombination factor protein RarA [Brucella abortus str. 2308 A]
 gi|237788923|gb|EEP63134.1| recombination factor protein RarA [Brucella abortus str. 2308 A]
          Length = 457

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 78/348 (22%), Positives = 123/348 (35%), Gaps = 60/348 (17%)

Query: 1   MMDREGLL-SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M D        N  +       LRP+ L E TGQ        V        + +L  ++F
Sbjct: 21  MSDLFSTAADPNADRNRPLADRLRPKHLSEVTGQEHLTGPEGVLTRMI--ASGSLGSMVF 78

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDE 113
            GPPG GKTT+A+++A E  + F   S  + +   DL  +            + +LF+DE
Sbjct: 79  WGPPGTGKTTVARLLAGETDLAFEQISA-IFSGVADLKRVFEAARARRMSGRQTLLFVDE 137

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++   P MED  + L+    E PS       LSR                  
Sbjct: 138 IHRFNRAQQDSFLPVMEDGTVILIGATTENPSFELNAALLSR------------------ 179

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTG--LAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
                 +  + ++ E + T+++R  +  G  L + DEA   +   + G  R A  L   V
Sbjct: 180 ---ARVLTFHPHDSESIATLLKRAEEQEGQALPLDDEARASLIRMADGDGRAALTLAEEV 236

Query: 230 RDFAEVAHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISA 287
                V   +          + R A   DK      +L                   ISA
Sbjct: 237 WR--AVRPGEVFDAAKLQDVVQRRAPVYDKSQDGHYNL-------------------ISA 275

Query: 288 GLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                R +  D    Y+ +       P   G  L+ +A + +G+  P 
Sbjct: 276 LHKSVRGSDPDAALYYLSRMFDAGEDPLYIGHRLVRMAVEDIGLADPQ 323


>gi|227821784|ref|YP_002825754.1| recombination factor protein RarA [Sinorhizobium fredii NGR234]
 gi|227340783|gb|ACP25001.1| ATPase, AAA family protein [Sinorhizobium fredii NGR234]
          Length = 436

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 76/344 (22%), Positives = 120/344 (34%), Gaps = 52/344 (15%)

Query: 1   MMDREGLLSR-NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M D    +    ++        LRPRTL E TGQ                 + +L  ++F
Sbjct: 1   MSDLFSPVEPPEMASARPLADRLRPRTLAEVTGQEHLTGADGALTRMI--ASGSLGSMIF 58

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEI 114
            GPPG GKTT+A++++ E G+ F   S        + K  + A        + +LF+DEI
Sbjct: 59  WGPPGTGKTTVARLLSGEAGLAFEQISAIFSGVADLKKVFESARARRMSGRQTLLFVDEI 118

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++   P ME+  + L+    E PS       LSR                   
Sbjct: 119 HRFNRAQQDSFLPVMENGTVILVGATTENPSFELNAALLSR------------------- 159

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
                +    ++   L+ ++ R  +  G  +        A       R+A    R V   
Sbjct: 160 --ARVLTFKAHDEASLEELLTRAEQAEGKPLP-----LDADARGSLIRMADGDGRAVLTL 212

Query: 233 AEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVG-IETISAGLSE 291
           AE         E+  AA      D           +   A  +  G  G    ISA    
Sbjct: 213 AE---------EVWRAARQDEIFDTEAL----RDIVQRRAPVYDKGQDGHYNLISALHKS 259

Query: 292 PRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            R +  D    Y+ +       P   GR L+ +A + +G+  P 
Sbjct: 260 VRGSDPDAALYYLCRMFDAGEDPLYIGRRLVRMAIEDIGLADPQ 303


>gi|254439267|ref|ZP_05052761.1| ATPase, AAA family protein [Octadecabacter antarcticus 307]
 gi|198254713|gb|EDY79027.1| ATPase, AAA family protein [Octadecabacter antarcticus 307]
          Length = 435

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 70/330 (21%), Positives = 119/330 (36%), Gaps = 58/330 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP++L +  GQ +               + +L  ++F GPPG+GKTT+A+++A 
Sbjct: 18  PLADRLRPKSLGDVIGQEQVLGPDAPL--GVMLSSGSLSSLIFWGPPGVGKTTIARLLAD 75

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
           E  + F   S      P + K  + A +        +LF+DEIHR +   ++   P MED
Sbjct: 76  ETDLYFIQISAIFTGMPDLRKVFEAAKMRRENGKGTLLFVDEIHRFNKAQQDGFLPHMED 135

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             + L+    E PS       LSR  ++                           + DL+
Sbjct: 136 GTILLVGATTENPSFELNSAVLSRSQVLVL---------------------ERLTLADLE 174

Query: 190 TIVQRGAKLT--GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            + QR  K     L +   A   +   + G  R    L+ +V   A       +  +   
Sbjct: 175 RMAQRAEKDLVRKLPLDGPARENLLEMADGDGRALLNLIEQV---AAWKVDGKLDTDALS 231

Query: 248 AALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
             L++ A   DK G +  +L                   ISA     R +  D    +  
Sbjct: 232 TRLMKRAARYDKSGDEHYNL-------------------ISALHKSVRGSDPDAALYWFA 272

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +       PR   R +  ++ + +G+  P 
Sbjct: 273 RMLKGGEDPRFLARRITRMSVEDIGLADPQ 302


>gi|88812897|ref|ZP_01128141.1| ATPase, AAA family protein [Nitrococcus mobilis Nb-231]
 gi|88789819|gb|EAR20942.1| ATPase, AAA family protein [Nitrococcus mobilis Nb-231]
          Length = 435

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 74/327 (22%), Positives = 112/327 (34%), Gaps = 46/327 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RPR L EF GQ       K   E  +A       ++F GPPG GKTTLA+++A 
Sbjct: 7   PLADRMRPRLLTEFVGQSHLLDAGKPLREVIEA--GRPHSMVFWGPPGTGKTTLARLIAE 64

Query: 77  ELGVNFRSTSGPVIAKAGDLAAL------LTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
                F + S  V+A   ++               + +LF+DE+HR +   ++   P +E
Sbjct: 65  ATEAEFLALSA-VMAGVKEIRQASATGQANRARGRQTILFVDEVHRFNKAQQDAFLPFIE 123

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           D  +  +    E PS       LSR                + D                
Sbjct: 124 DGTVVFIGATTENPSFELNNALLSRLRTYVLRPLGEAALARIID--------------CA 169

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
               +RG     LA++++A   +   + G  R A  LL    D +       I    A A
Sbjct: 170 LEDSERGLGTKQLALSEQARSLLIQAADGDARSALSLLEVAADLSAAEARIDIDLIRAAA 229

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           A  R   DK G    D                    ISA     R +  D    ++ +  
Sbjct: 230 AGGRARFDKRGEAFYDE-------------------ISALHKAVRGSAPDAALYWLCRML 270

Query: 309 FIQRTP--RGRLLMPIAWQHLGIDIPH 333
                P    R L+ +A + +G   P 
Sbjct: 271 AGGCDPLYLARRLLRMASEDIGNADPR 297


>gi|237736637|ref|ZP_04567118.1| ATPase [Fusobacterium mortiferum ATCC 9817]
 gi|229420499|gb|EEO35546.1| ATPase [Fusobacterium mortiferum ATCC 9817]
          Length = 410

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 72/341 (21%), Positives = 129/341 (37%), Gaps = 59/341 (17%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
             L   N          LRP++LE+F GQ +      +  +  + +   + + +F GPPG
Sbjct: 3   NNLFGNNYEVVKPLAMKLRPQSLEDFIGQEKLLGKGGILRKLIERQN--ISNSIFYGPPG 60

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRL 117
            GK++L +++++ +  NF + +    A   DL  ++   +        + +LF+DEIHR 
Sbjct: 61  CGKSSLGEIISKSINSNFETLNA-TTASLNDLREVVERAKKSIEFYGKKTILFLDEIHRF 119

Query: 118 SIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
           + + ++ L    E+  + L+    E P        LSR                      
Sbjct: 120 NKMQQDALLSHCENGTITLIGATTENPYYSLNNALLSRV--------------------- 158

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGL-AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
           +       E +D++ IV+RG +   L  V+DE    I   S+G  RIA   L   ++   
Sbjct: 159 MIFEFKALERKDIEKIVRRGIEKLELKDVSDEIIECILDISQGDSRIALNYLELYKNSCT 218

Query: 235 VAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRD 294
                    E+ +    R A      D+ +L                   ISA +   R 
Sbjct: 219 ----DLKLEEVLEIFRTRQASYHKAEDKYNL-------------------ISAMIKSMRG 255

Query: 295 AIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +  D    ++ +       PR   R L+  A + +G+  P 
Sbjct: 256 SDPDSALYWLGRLLAGGEDPRYIARRLVVHASEDIGMANPE 296


>gi|46190307|ref|ZP_00206422.1| COG2256: ATPase related to the helicase subunit of the Holliday
           junction resolvase [Bifidobacterium longum DJO10A]
          Length = 436

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 87/341 (25%), Positives = 128/341 (37%), Gaps = 70/341 (20%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIE----AAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +RPRTL+E  GQ +              A+K    A   V+  GPPG+GKTTLA +VA +
Sbjct: 1   MRPRTLDEVIGQTQVLGQGSPLRRLANPASKGSLTAPSSVILFGPPGVGKTTLATIVAGQ 60

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAME 130
            G  F   S  V +   D+  +LT   +R        VLFIDE+HR S   ++ L PA+E
Sbjct: 61  SGRVFEELSA-VTSGVKDVRDVLTRAHERLVSRGQETVLFIDEVHRFSKSQQDALLPAVE 119

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +  +  +    E PS   +K  LSR  ++   +                      E + L
Sbjct: 120 NRDVTFIGATTENPSFSIIKPLLSRSVVVKLES---------------------LEPDQL 158

Query: 189 KTIVQRGAKLTG-----LAVTDEAACEIAMRSRGTPRIAGRLLRRVR-----DFAEVAHA 238
             +VQR           +  TDEA  +I   + G  R +  +L         D A    A
Sbjct: 159 IELVQRALTDDRGLRGEVKATDEAIADIVRMAGGDARKSLTILEAAAGAVTGDEARKKGA 218

Query: 239 KTITREIADAALLRL----AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRD 294
           +         A +        DK G D  D+                   ISA +   R 
Sbjct: 219 RRPIITPEIVATVMDTATVRYDKDGDDHYDV-------------------ISAFIKSMRG 259

Query: 295 AIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +  D    Y+ +       PR   R +M  A + +G+  P 
Sbjct: 260 SDPDAAIHYLARMLKAGEDPRFIARRIMIAASEEVGMAAPQ 300


>gi|111038318|gb|ABH03541.1| putative Werner helicase-interacting protein [Arabidopsis thaliana]
          Length = 524

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 73/345 (21%), Positives = 125/345 (36%), Gaps = 50/345 (14%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           R  L S +  Q       +RPRTL++  GQ    S   +   A +  +  L  ++F GPP
Sbjct: 88  RHKLSSSSHRQHQPLSERMRPRTLDDVVGQDHLLSPSSLLRSAVE--SNRLPSIVFWGPP 145

Query: 64  GLGKTTLAQVV---ARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDE 113
           G GKT++A+ +   +++  +    +   V +   D+   + + +        R VLF+DE
Sbjct: 146 GTGKTSIAKSLINSSKDPSLYRFVSLSAVTSGVKDVRDAVESAKRLNLEGRKRTVLFMDE 205

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           +HR +   ++   P +ED  +  +    E PS   +   LSR  ++            L 
Sbjct: 206 VHRFNKSQQDTFLPVIEDGSILFIGATTENPSFHLITPLLSRCRVLTLNPLKPNHVETLL 265

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R                   +RG     + V D     +A    G  R+A   L     
Sbjct: 266 RR--------------AVDDSERGLP-NSVEVDDSVIEFLANNCDGDARVALNALEISAT 310

Query: 232 FAEVAH--AKTITREIADAALL--RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISA 287
            A         ++ + A  AL    LA DK G    +   ++ + ++  GG         
Sbjct: 311 MATTRAGTDAVVSIDDAKEALQCKHLAYDKAGEQHYN--LISALHKSMRGGDANAAIYWL 368

Query: 288 GLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
                   +E   EP  I           R L+  A + +G+  P
Sbjct: 369 A-----RMLEGGEEPLYI----------ARRLIRFASEDIGLADP 398


>gi|193215466|ref|YP_001996665.1| recombination factor protein RarA [Chloroherpeton thalassium ATCC
           35110]
 gi|193088943|gb|ACF14218.1| AAA ATPase central domain protein [Chloroherpeton thalassium ATCC
           35110]
          Length = 439

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 71/340 (20%), Positives = 130/340 (38%), Gaps = 47/340 (13%)

Query: 1   MMDREGLL--SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M D    +  S   +  +     +RP+TL+E  GQ     +   F +     +     ++
Sbjct: 1   MSDLFEEIEQSSKPTPIEPLAERMRPKTLDEVIGQPHLTDSHSPFRQ--FLSSGDFPSMI 58

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFID 112
             GPPG+GKTTLA +++R  G  +   S  + +   ++ +++T          +  LFID
Sbjct: 59  LWGPPGVGKTTLALLLSRNSGYEYMQISA-IDSGVKEVRSVITQALQNHKRGKKTSLFID 117

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           EIHR +   ++ L  A+E   L L+    E PS   +   LSR         V  L  PL
Sbjct: 118 EIHRFNKAQQDALLGAVEKGTLKLIGATTENPSFEVIPALLSR--------SVVYLLKPL 169

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
           ++     +     E +++  ++Q+  ++         A   A R+  T  IA     + +
Sbjct: 170 ENEDIRRVVNQALESDEI--LMQKTIQIEAWDFLFRLASGDARRALNTLEIAINAAEKSK 227

Query: 231 DFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
               +     + + +   AL     DK G    D+                   ISA + 
Sbjct: 228 KQPVLITESLLEKTLQQQAL---RYDKKGDSHYDV-------------------ISAFIK 265

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLG 328
             R +  D    ++ +       P+   R ++  A + +G
Sbjct: 266 SLRGSDPDAALFWLAKMLDAGEDPKFIARRMIIFASEDIG 305


>gi|15613820|ref|NP_242123.1| recombination factor protein RarA [Bacillus halodurans C-125]
 gi|10173873|dbj|BAB04976.1| BH1257 [Bacillus halodurans C-125]
          Length = 428

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 69/327 (21%), Positives = 120/327 (36%), Gaps = 41/327 (12%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           ++      +RP  ++E  GQ       K+      A    L  ++  GPPG+GKT++AQ 
Sbjct: 2   KKQPLAYRMRPSNIDEVIGQQHLVGEGKIIRRMVDAGQ--LSSMILYGPPGVGKTSIAQA 59

Query: 74  VARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           +A     +++  +  V  K   ++      +  + +L +DE+HRL    ++ L P +E  
Sbjct: 60  IAGSTDTHYKLLNAVVNNKKDMEIVVEEAKMSGQLILILDEVHRLDKGKQDFLLPHLEKG 119

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
            L L+      P         SR  +   T           D   + +     +      
Sbjct: 120 LLILIGATTANPFHSINPAIRSRCQIFELTPLT-------TDEIKVALTRALTDKTH--- 169

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE--VAHAKTITREIADA 248
               G     + ++DEA    A    G  R A   L       +  V   K IT  +A+ 
Sbjct: 170 ----GLGEEPVVISDEALAHFAFACGGDVRSALNGLELAVRSTQPNVKGEKEITLSVAEE 225

Query: 249 ALLR--LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
            + R     DK G    D+  L+   ++  G  V              A+  L    +I+
Sbjct: 226 CIQRKSFHHDKDGDAHYDV--LSAFQKSIRGSDV------------NAALHYLAR--LIE 269

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            G +     GR L+ IA++ +G+  P 
Sbjct: 270 AGDLVSI--GRRLLVIAYEDIGLANPQ 294


>gi|15221721|ref|NP_173839.1| AAA-type ATPase family protein [Arabidopsis thaliana]
 gi|2829884|gb|AAC00592.1| Hypothetical protein [Arabidopsis thaliana]
 gi|332192391|gb|AEE30512.1| AAA-type ATPase-like protein [Arabidopsis thaliana]
          Length = 525

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 73/345 (21%), Positives = 125/345 (36%), Gaps = 50/345 (14%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           R  L S +  Q       +RPRTL++  GQ    S   +   A +  +  L  ++F GPP
Sbjct: 89  RHKLSSSSHRQHQPLSERMRPRTLDDVVGQDHLLSPSSLLRSAVE--SNRLPSIVFWGPP 146

Query: 64  GLGKTTLAQVV---ARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDE 113
           G GKT++A+ +   +++  +    +   V +   D+   + + +        R VLF+DE
Sbjct: 147 GTGKTSIAKSLINSSKDPSLYRFVSLSAVTSGVKDVRDAVESAKRLNLEGRKRTVLFMDE 206

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           +HR +   ++   P +ED  +  +    E PS   +   LSR  ++            L 
Sbjct: 207 VHRFNKSQQDTFLPVIEDGSILFIGATTENPSFHLITPLLSRCRVLTLNPLKPNHVETLL 266

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R                   +RG     + V D     +A    G  R+A   L     
Sbjct: 267 RR--------------AVDDSERGLP-NSVEVDDSVIEFLANNCDGDARVALNALEISAT 311

Query: 232 FAEVAH--AKTITREIADAALL--RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISA 287
            A         ++ + A  AL    LA DK G    +   ++ + ++  GG         
Sbjct: 312 MATTRAGTDAVVSIDDAKEALQCKHLAYDKAGEQHYN--LISALHKSMRGGDANAAIYWL 369

Query: 288 GLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
                   +E   EP  I           R L+  A + +G+  P
Sbjct: 370 A-----RMLEGGEEPLYI----------ARRLIRFASEDIGLADP 399


>gi|187734543|ref|YP_001876655.1| ATPase AAA [Akkermansia muciniphila ATCC BAA-835]
 gi|187424595|gb|ACD03874.1| AAA ATPase central domain protein [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 459

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 71/330 (21%), Positives = 120/330 (36%), Gaps = 51/330 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RPRTL+E  GQ    +  K+   A +   +    ++F GPPG GKTTLA V+AR
Sbjct: 25  PLAARMRPRTLDEVAGQKHLLAPGKLLRRAIET--DRFTSLIFYGPPGCGKTTLAAVIAR 82

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAM 129
               +F   +G V +   D+   +   +        + VLF+DE+HR +   +++L P +
Sbjct: 83  TTNAHFMMLNG-VESNVADIREKIAQAQMRMSMHGRKTVLFVDELHRFNKAQQDVLLPHL 141

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E   +  +    E P        LSR  +                   +P       ++ 
Sbjct: 142 EKGTVRFIGATTENPYFAINSPLLSRSQVFPMEP--------------VPEEELAALLKR 187

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
                 RG   + + +  EA   +A ++ G  R A   L              I  +I+ 
Sbjct: 188 ALADEVRGLGASRVDMEAEALNHLAAKADGDARKALTALEVAVLSTPAGKDGVIHVDISV 247

Query: 248 A----ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           A        +  D++G    D                   TISA +   R +  D    +
Sbjct: 248 AEESIQRKAIRYDRLGDSHYD-------------------TISAFIKSMRGSDPDAALYW 288

Query: 304 MIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
           +          R  GR L+  A + +G+  
Sbjct: 289 LGMMLEAGEDIRFIGRRLVIAASEDVGLAD 318


>gi|116073846|ref|ZP_01471108.1| putative ATPase, AAA family protein [Synechococcus sp. RS9916]
 gi|116069151|gb|EAU74903.1| putative ATPase, AAA family protein [Synechococcus sp. RS9916]
          Length = 736

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 79/329 (24%), Positives = 127/329 (38%), Gaps = 44/329 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RPR LEEF GQ    +  ++   A  A  + + ++L  GPPG+GKTTLA+++A 
Sbjct: 19  PLADRMRPRNLEEFVGQGAILAEGRLLRRAIAA--DRVGNLLLHGPPGVGKTTLARIIAN 76

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAM 129
               +F S +  V+A   DL   +     R        +LFIDE+HR +   ++ L P +
Sbjct: 77  HTRAHFSSLNA-VLAGVKDLRTEVDAARQRLDRHGLRTILFIDEVHRFNSAQQDALLPWV 135

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E+  L L+    E P     K  +SR  L    T        L  R              
Sbjct: 136 ENGTLTLIGATTENPYFEVNKALVSRSRLFRLQTLEADDLRDLLSR-------------- 181

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR-RVRDFAEVAHAKTITREIA 246
             +  +RG     + +T EA   +   + G  R     L   V      A + TI+ ++ 
Sbjct: 182 ALSDQERGYGDRLVTITSEAIDHLVDVANGDARSLLNALELAVESTPADADSGTISIDLT 241

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
            A        +    Q  + Y          G    +TISA +   R +  D    ++ +
Sbjct: 242 IA--------EESIQQRAVLY-------DKQGDAHFDTISAFIKSLRGSDPDAALFWLAR 286

Query: 307 QGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                  PR   R ++  A + +G+  P 
Sbjct: 287 MVEAGENPRFIFRRMLISAGEDIGLADPQ 315


>gi|332299790|ref|YP_004441711.1| AAA ATPase central domain protein [Porphyromonas asaccharolytica
           DSM 20707]
 gi|332176853|gb|AEE12543.1| AAA ATPase central domain protein [Porphyromonas asaccharolytica
           DSM 20707]
          Length = 439

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 72/335 (21%), Positives = 122/335 (36%), Gaps = 54/335 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACS---NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
                +RP+TLEE+ GQ         L+V +E        +  ++  GPPG+GKTTLA++
Sbjct: 7   PLAERMRPKTLEEYVGQSHLVGANAPLRVMLERG-----HIPSMILWGPPGVGKTTLARL 61

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLED-----------RDVLFIDEIHRLSIIVE 122
           +++ +     S S  V +   D+   L   ++           R +LFIDEIHR S   +
Sbjct: 62  LSQMMQCRCYSLSA-VGSGVADVRKTLQEAKEAQSGLFSQHQGRPILFIDEIHRFSKSQQ 120

Query: 123 EILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR-FGIPIR 179
           + L  A+E   + L+    E PS + +   LSR  +           + L DR F     
Sbjct: 121 DSLLAAVEQGVVTLIGATTENPSFQVIHPLLSRCQVFVLKPLEPSDLSQLIDRVFATDPL 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
            + Y                 + +       +   + G  R    LL      A   H  
Sbjct: 181 FSRY----------------QVTLEGADRELLIHLAGGDARKLLNLLEMTLSMALEQHPD 224

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
               ++   A+  +A  +      D             G +  +  SA +   R +  D 
Sbjct: 225 ETAVQLTGEAIASVARQQPAAFDRD-------------GELHYDIASAFIKSIRGSDPDA 271

Query: 300 IEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
              +M +       PR   R ++  A + +G+  P
Sbjct: 272 ALYWMARLIEGGEEPRFIARRVVISAAEDIGLANP 306


>gi|301062625|ref|ZP_07203257.1| ATPase, AAA family [delta proteobacterium NaphS2]
 gi|300443305|gb|EFK07438.1| ATPase, AAA family [delta proteobacterium NaphS2]
          Length = 741

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 74/339 (21%), Positives = 128/339 (37%), Gaps = 51/339 (15%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           +N        + +RP TLEEF GQ    +  ++   A +A  + L  V+F GPPG GKTT
Sbjct: 4   QNSRGYAPLAARMRPGTLEEFVGQSHIAAPGRLLRRAIQA--DQLSSVIFHGPPGTGKTT 61

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVE 122
           LA V+A     +       V+    DL   +++        + R +LF+DEIHR +   +
Sbjct: 62  LAMVIANTT-RSRFIPLNAVLTGVKDLREAISDARRHREEEDRRTILFVDEIHRWNKSQQ 120

Query: 123 EILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           + L P +E+  + L+    E P        +SR       +RV  L    +      +  
Sbjct: 121 DALLPWVENGTVILVGATTENPYFSVNSPLVSR-------SRVFRLEPLSKADLRTVLIR 173

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA--EVAHA 238
              + E+       G     + V  +A   +   + G  R     L    +    +    
Sbjct: 174 ALTDREN-------GYGTLNVKVHPDALEHLVNVAGGDARSVLNALELAVETTPPDARGR 226

Query: 239 KTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAI 296
             +   +A+ ++ R A   D+ G    D                   TISA +   R + 
Sbjct: 227 IVVDMGVAEESIQRRAVLYDRDGDAHYD-------------------TISAFIKSLRGSD 267

Query: 297 EDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            D    ++ +       PR   R ++ +A + +G+  P 
Sbjct: 268 PDAALYWLAKMVHAGEDPRFMFRRMLILAAEDVGLADPR 306


>gi|114704681|ref|ZP_01437589.1| hypothetical protein FP2506_07091 [Fulvimarina pelagi HTCC2506]
 gi|114539466|gb|EAU42586.1| hypothetical protein FP2506_07091 [Fulvimarina pelagi HTCC2506]
          Length = 464

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 70/334 (20%), Positives = 122/334 (36%), Gaps = 53/334 (15%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           N ++       LRPR L E  GQ        +         + L  ++F GPPG GKTT+
Sbjct: 39  NPAERRPLADRLRPRMLSEVVGQEHLTGEGGILSRM--LAGKNLGSMIFWGPPGTGKTTV 96

Query: 71  AQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           A+++A++    F   S        + K  + A +  +     +LF+DEIHR +   ++  
Sbjct: 97  ARLLAKDSDYAFEQISAIFTGVADLKKVFESARMRRSNGRPTLLFVDEIHRFNRAQQDSF 156

Query: 126 YPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
            P MED  + L+    E PS       LSR                        +    +
Sbjct: 157 LPVMEDGTVVLVGATTENPSFELNAALLSR---------------------ARVLTFKPH 195

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           +   L  ++ R   +      ++A        +   R+A    R +   AE        R
Sbjct: 196 DTTSLSLLLNRAETI-----EEKALPLDDEARQVLLRLADGDGRAILSLAEEVWRAARDR 250

Query: 244 EIADAALLRLAIDKMG--FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           EI D+A L+  + +    +D+    +  +              ISA     R +  D   
Sbjct: 251 EIFDSAALQEIVQRRAPVYDKSQDGHYNL--------------ISALHKSVRGSDPDAAL 296

Query: 302 PYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
            ++ +       P   GR L+ +A + +G+  P+
Sbjct: 297 YWLCRMLDAGEDPLYLGRRLVRMASEDIGLADPN 330


>gi|253681470|ref|ZP_04862267.1| recombination factor protein RarA [Clostridium botulinum D str.
           1873]
 gi|253561182|gb|EES90634.1| recombination factor protein RarA [Clostridium botulinum D str.
           1873]
          Length = 419

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 70/348 (20%), Positives = 123/348 (35%), Gaps = 52/348 (14%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD   L  +  +        +RP+ L EF GQ       K+     K   + L  ++  G
Sbjct: 1   MDLFDLALKKSTTNKPLAERMRPKNLNEFFGQEHIIGKGKLLRRLIKT--DNLTSIILYG 58

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEI 114
           PPG+GKTTLA +++ +    F   +        ++   +   E+       R + FIDEI
Sbjct: 59  PPGVGKTTLAHIISLDTKSEFVKLNA-TSTGVKEIREYIKKAEEVLKFYGKRTIFFIDEI 117

Query: 115 HRLSI-IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           H L     ++ L  A+E   + L+    E P     +  LSR  +    +        L+
Sbjct: 118 HSLKKGSQQDALLEAIEKGIVVLIGATTENPYFEINRALLSRSKIFQLES--------LK 169

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
           +   + +      ++      +RG     + +  E    +A  S G  R +   L     
Sbjct: 170 ENEIVEV------LQRALKDSKRGYGNLKINIDKEVLKIVAKLSGGDARGSLNTLELAIL 223

Query: 232 FAEVAHAK--TITREIADAALLR--LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISA 287
                     TI +EI    + +  +  D  G +  D+                   ISA
Sbjct: 224 STPRNSDGSITINKEIIKECIQKPIVNYDATGDNHYDI-------------------ISA 264

Query: 288 GLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +   R +  D    +  +       PR   R L+  A + +G+  P+
Sbjct: 265 FIKSIRGSNPDAALYWFGRMIIGGEDPRFIVRRLIVHASEDIGMKDPN 312


>gi|315640057|ref|ZP_07895182.1| AAA family ATPase [Enterococcus italicus DSM 15952]
 gi|315484185|gb|EFU74656.1| AAA family ATPase [Enterococcus italicus DSM 15952]
          Length = 423

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 72/325 (22%), Positives = 120/325 (36%), Gaps = 46/325 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RPRTL+E  GQ       K+      A+   L  ++  GPPG GKT++A  +A 
Sbjct: 4   PLAYRMRPRTLDEVVGQQHLVGPGKIIRRMVDAK--LLSSMILYGPPGTGKTSIASAIAG 61

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR+ +     K    + A    +    +L +DE+HRL    ++ L P +E+ ++ 
Sbjct: 62  STQFAFRTLNAATDTKKDLQIVAEEAKMSGTVILLLDEVHRLDKTKQDFLLPHLENGRII 121

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           L+    E P         SR  +            PL +         ++ +E      +
Sbjct: 122 LIGATTENPYITINPAIRSRTQIFEVY--------PLSES------DIYHALEQALQDSE 167

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR-RVRDFAEVAHAKTITREIADAALLR 252
           RG     + + + A   +A  + G  R A   L    +  AE+A    +T  I    + R
Sbjct: 168 RGLGKDAITIDEVALTHLARVTNGDLRSALNALELAAKSTAEIAGTIHLTLAIISECVQR 227

Query: 253 LA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ--- 307
            A   DK G    D+                   ISA     R +  D    Y+ +    
Sbjct: 228 KAFSHDKDGDAHYDV-------------------ISAFQKSIRGSDPDAALHYLARMVEA 268

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIP 332
           G +      R L+ I ++ +G+  P
Sbjct: 269 GDLASIC--RRLLVIGYEDIGLANP 291


>gi|312110107|ref|YP_003988423.1| MgsA AAA+ ATPase-like protein [Geobacillus sp. Y4.1MC1]
 gi|311215208|gb|ADP73812.1| MgsA AAA+ ATPase-like protein [Geobacillus sp. Y4.1MC1]
          Length = 431

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 67/324 (20%), Positives = 120/324 (37%), Gaps = 41/324 (12%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +     +RPR ++E  GQ           +  K     +  +L  G PG+GKT+LA  +A
Sbjct: 6   EPLSVRMRPRNIDEIVGQQHIIGPHTALYKMIKNGH--VPSLLLYGEPGVGKTSLAHAIA 63

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             +  +F + +    +   ++  ++   +     +LFIDEIHR +   ++ L P +E   
Sbjct: 64  GTVQRDFFAINATA-SGKKEMEEVVETAKLTGNVILFIDEIHRFNKAQQDYLLPHIEQGL 122

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + L+    E P         SR   I    R+        D   I +R   ++ +     
Sbjct: 123 ITLIGATTENPFHEVNPAIRSRCGQIKQLKRLEP------DDILILLRRALHDRD----- 171

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
             RG     + + +     IA  S G  R+A  LL  +  +A      ++     D   +
Sbjct: 172 --RGLGTLAVDMEERLLSMIAEASGGDARLALNLLETII-YASQKDDGSV---HVDEQTV 225

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ---G 308
           R  ++  GF                 G      +SA     R +  D    Y+ +    G
Sbjct: 226 RECVENRGFTH------------DKKGDTYYSLLSAFQKSVRGSDVDAALHYLARLLEGG 273

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIP 332
            +      R L+ IA++ +G+  P
Sbjct: 274 DLAAVC--RRLLVIAYEDIGLANP 295


>gi|217979120|ref|YP_002363267.1| AAA ATPase central domain protein [Methylocella silvestris BL2]
 gi|217504496|gb|ACK51905.1| AAA ATPase central domain protein [Methylocella silvestris BL2]
          Length = 437

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 73/348 (20%), Positives = 119/348 (34%), Gaps = 61/348 (17%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D   +     +        LRP+TL E  GQ              +  + +L  ++F 
Sbjct: 1   MSDLFAVAGLETTAPHPLADRLRPKTLAEVVGQDHLVGPEGALTR--RIASGSLGSLIFW 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEI 114
           GPPG GKTT+A+++A E    F   S  + +   +L  L      R       +LF+DEI
Sbjct: 59  GPPGTGKTTVARLLAHETNFAFVQVSA-IFSGVAELKKLFEEARGRRAIGQGTLLFVDEI 117

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++   P MED  + L+    E PS       LSR                   
Sbjct: 118 HRFNRAQQDSFLPVMEDGAITLIGATTENPSFELNAALLSR------------------- 158

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGA--KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
                +     + E ++ ++ R    +   L +   A   +   + G  R A  L   V 
Sbjct: 159 --ASVLTFRALDEEAIEKVLSRAETHEARPLPLEPAARAAMIRMADGDGRAALTLAEEVW 216

Query: 231 DFA---EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISA 287
             A   E+  A+ +   +   A      DK      +L                   ISA
Sbjct: 217 RAASPGEIFGAEQLAEIVQRRA---PIYDKAQEGHYNL-------------------ISA 254

Query: 288 GLSEPRDAIEDLIEPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
                R +  D    Y+ +       P    R ++ +A + +G+  P 
Sbjct: 255 LHKAVRGSDPDASLYYLARMFDAGEDPLFLARRVVRMATEDIGLADPQ 302


>gi|182413522|ref|YP_001818588.1| ATPase central domain-containing protein [Opitutus terrae PB90-1]
 gi|177840736|gb|ACB74988.1| AAA ATPase central domain protein [Opitutus terrae PB90-1]
          Length = 448

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 67/330 (20%), Positives = 115/330 (34%), Gaps = 54/330 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RPR L E  GQ        +              ++F GPPG GKT++A+ +A+
Sbjct: 28  PLAARMRPRRLAEVVGQSHILKPGSLLPR--LVAQNRFGSLIFYGPPGCGKTSIAEAIAQ 85

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED----RDVLFIDEIHRLSIIVEEILYPAMEDF 132
           E    F   +  V++   +L  +L +         +LFIDE+HR +   +++L P +E+ 
Sbjct: 86  ETNSRFVRVNA-VMSNVAELREILHSARRLPQASTILFIDELHRFNKSQQDLLLPDVEEG 144

Query: 133 QLDLM--VGEGPSARSVKINLS-----RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
            + L+      P        LS     R   ++     G+L   L D             
Sbjct: 145 TVRLIGATTHNPGFYVNPPLLSRSHLFRLEPLSPAAVTGVLKKALADE------------ 192

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
                  +RG     +   D+   ++A+   G  R A   L  +          T     
Sbjct: 193 -------ERGLGARKVTADDKVLADLAVLCDGDLRRALNALEVLVLGLPEGGVITPAELE 245

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
             A   R+  D    +  D                   TISA +   R +  D    ++ 
Sbjct: 246 VFARERRIRYDADEDEHYD-------------------TISAFIKSCRGSDPDAALYWLA 286

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +       PR   R L+ +A + +G+  P 
Sbjct: 287 KMLAGGEDPRFIARRLVILASEDVGLADPQ 316


>gi|316933557|ref|YP_004108539.1| AAA ATPase central domain-containing protein [Rhodopseudomonas
           palustris DX-1]
 gi|315601271|gb|ADU43806.1| AAA ATPase central domain protein [Rhodopseudomonas palustris DX-1]
          Length = 443

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 73/344 (21%), Positives = 120/344 (34%), Gaps = 56/344 (16%)

Query: 4   REGLLSRNVSQEDADIS---LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
            E L +    + +A       LRPR+L +  GQ              + R   L  ++F 
Sbjct: 9   SENLFAAAGLEREAPRPLPDRLRPRSLADVVGQDHIVGPDGALTRMLETR--TLGSLVFW 66

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIH 115
           GPPG GKTT+A+++A    ++F   S        + K  D A     +    +LF+DE+H
Sbjct: 67  GPPGTGKTTVARLLADATELHFEQISAVFSGVADLKKVFDAARARREMGTGTLLFVDEVH 126

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P MED  + ++    E PS       LSR  ++   +        L   
Sbjct: 127 RFNKAQQDSFLPVMEDGTVVMVGATTENPSFELNAALLSRARVLVFRS--------LDAE 178

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
               + ++  E+E  K           L +  EA   +   + G  R +  L   V   A
Sbjct: 179 AIEKLFVHAEEVEGRK-----------LPLDAEARAVLVRMADGDGRASLTLAEEVWRSA 227

Query: 234 EVAHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
                +          L R A   DK      +L                   ISA    
Sbjct: 228 RA--GEVFNATQLQDILQRRAPIYDKAADGHYNL-------------------ISALHKS 266

Query: 292 PRDAIEDLIEPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
            R +  D    Y+ +       P    R ++ +A + +G+  P 
Sbjct: 267 VRGSDPDAALYYLCRMFDAGEDPLFLARRVVRMAVEDVGLADPQ 310


>gi|168004780|ref|XP_001755089.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162693682|gb|EDQ80033.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 503

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 63/334 (18%), Positives = 114/334 (34%), Gaps = 45/334 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP +++   GQ        +           L  ++F GPPG GKT+L + +AR
Sbjct: 92  PLAERMRPASVDLVVGQDHLLRPGCILRSLI--DNNTLSSIIFWGPPGTGKTSLVRAIAR 149

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            +   F + S        + +  + A  +    +R +LF+DEIHR +   ++   P +E 
Sbjct: 150 AVSYRFIALSAVSCGLKEVREILEEAKRVRKFGERTLLFLDEIHRFNKSQQDAFLPYVEA 209

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             +  +    E PS       LSR  ++            L DR         Y+ E   
Sbjct: 210 GHIVFIGATTENPSFEINAALLSRCRVLTLNKLQPEHIRSLLDR-------AIYDKEKGL 262

Query: 190 TIVQRGAKLTGLAVTDEAACEI-AMRSRGTPRIAGRLLR-----RVRDFAEVAHAKTITR 243
            +   G     +   +E A +     + G  R+A   L        R +       +   
Sbjct: 263 LLSLVGCAPEDVVRVEEDALQFLTGAADGDARVALNSLEIAGLAAYRVWESTPRKSSADD 322

Query: 244 EIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           +    AL R     DK G +  +   ++ + ++  GG                   D   
Sbjct: 323 KAVQEALQRSHVLYDKTGEEHYN--IISALHKSMRGGD-----------------PDAAI 363

Query: 302 PYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            ++ +       P    R L+  A + +G+  P 
Sbjct: 364 YWLARMLEGGEGPLYIARRLIRFASEDVGLADPQ 397


>gi|325107955|ref|YP_004269023.1| recombination protein MgsA [Planctomyces brasiliensis DSM 5305]
 gi|324968223|gb|ADY59001.1| Recombination protein MgsA [Planctomyces brasiliensis DSM 5305]
          Length = 453

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 85/343 (24%), Positives = 132/343 (38%), Gaps = 60/343 (17%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           +N  +     + +RPRTLEEF GQ +  +  ++     +A  + L  ++F GPPG GKTT
Sbjct: 11  KNREKAQPLAARMRPRTLEEFAGQQQFLAEGRLLRRLLEA--DRLGSLIFYGPPGTGKTT 68

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVE 122
           LA+++AR+ G  +   +        ++ A L            R +LF+DE+H  +   +
Sbjct: 69  LARLIARKTGAGWIGLNAA-SCGVKEVRAALQKASDSLATTGKRTILFVDELHHFTKTQQ 127

Query: 123 EILYPAMEDFQLDLM--VGEGPSARSVKINLSR-----FTLIAATTRVGLLTNPLQDRFG 175
           ++L P +E   +  +    + P    V   LSR     F  ++     GLL N L D   
Sbjct: 128 DVLLPELEQGTVIFIGATTDNPFFALVSALLSRSHIFEFEPLSVEALKGLLKNALADS-- 185

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR-RVRDFAE 234
                             RG       VT+EA   +A  + G  R A   L   V   A 
Sbjct: 186 -----------------ARGLGGYHAEVTEEALDFLAESADGDARRALSALEIAVLSVAA 228

Query: 235 VAHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEP 292
                 +   +A+ +L R A   DK G +  D                     SA +   
Sbjct: 229 ENERSFVDLAVAEESLQRKAIRYDKQGDEHYDAA-------------------SAMIKSI 269

Query: 293 RDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           R +  D    +M +       PR   R LM  A + +G   PH
Sbjct: 270 RGSDPDAAIYWMARMLEAGEPPRFVARRLMISASEDIGNADPH 312


>gi|148256359|ref|YP_001240944.1| recombination factor protein RarA [Bradyrhizobium sp. BTAi1]
 gi|146408532|gb|ABQ37038.1| Recombination protein MgsA [Bradyrhizobium sp. BTAi1]
          Length = 444

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 72/342 (21%), Positives = 110/342 (32%), Gaps = 56/342 (16%)

Query: 6   GLLSRNVSQEDADI---SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
            L +    + DA       LRP  L +  GQ              + R   L  ++F GP
Sbjct: 12  SLFAAAGMEHDAPRPLPERLRPHKLSDVVGQDHILGPDGALTRMLETR--TLGSLIFWGP 69

Query: 63  PGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           PG GKTT+A+++A    ++F   S        + K  D A          +LF+DE+HR 
Sbjct: 70  PGTGKTTVARLLADATELHFEQISAVFSGVADLKKVFDAARARRETGQGTLLFVDEVHRF 129

Query: 118 SIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
           +   ++   P MED  + L+    E PS       LSR  ++   +        L     
Sbjct: 130 NRAQQDSFLPVMEDGTVVLVGATTENPSFELNAALLSRSRVLVFHSLDAAAIERLYSN-- 187

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
                                +   L + DEA   +   + G  R A  L   V   A  
Sbjct: 188 -----------------AEAVEGRKLPLDDEARAVLIRMADGDGRAALTLAEEVWRSA-- 228

Query: 236 AHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
              +          L R A   DK      +L                   ISA     R
Sbjct: 229 RKDEIFNAVQLQEILQRRAPIYDKSADGHYNL-------------------ISAMHKSVR 269

Query: 294 DAIEDLIEPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
            +  D    Y  +       P    R ++ +A + +G+  P 
Sbjct: 270 GSDPDAALYYFARMLDAGEDPLFLARRIVRMAVEDIGLADPQ 311


>gi|62290117|ref|YP_221910.1| recombination factor protein RarA [Brucella abortus bv. 1 str.
           9-941]
 gi|82700040|ref|YP_414614.1| recombination factor protein RarA [Brucella melitensis biovar
           Abortus 2308]
 gi|189024355|ref|YP_001935123.1| recombination factor protein RarA [Brucella abortus S19]
 gi|254689426|ref|ZP_05152680.1| recombination factor protein RarA [Brucella abortus bv. 6 str. 870]
 gi|254693911|ref|ZP_05155739.1| recombination factor protein RarA [Brucella abortus bv. 3 str.
           Tulya]
 gi|254697561|ref|ZP_05159389.1| recombination factor protein RarA [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254730455|ref|ZP_05189033.1| recombination factor protein RarA [Brucella abortus bv. 4 str. 292]
 gi|256257672|ref|ZP_05463208.1| recombination factor protein RarA [Brucella abortus bv. 9 str. C68]
 gi|260546665|ref|ZP_05822404.1| ATPase [Brucella abortus NCTC 8038]
 gi|260754949|ref|ZP_05867297.1| recombination factor protein RarA [Brucella abortus bv. 6 str. 870]
 gi|260758165|ref|ZP_05870513.1| recombination factor protein RarA [Brucella abortus bv. 4 str. 292]
 gi|260761991|ref|ZP_05874334.1| recombination factor protein RarA [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260883958|ref|ZP_05895572.1| recombination factor protein RarA [Brucella abortus bv. 9 str. C68]
 gi|261214202|ref|ZP_05928483.1| recombination factor protein RarA [Brucella abortus bv. 3 str.
           Tulya]
 gi|297248512|ref|ZP_06932230.1| recombination factor protein RarA [Brucella abortus bv. 5 str.
           B3196]
 gi|62196249|gb|AAX74549.1| ATPase, AAA family [Brucella abortus bv. 1 str. 9-941]
 gi|82616141|emb|CAJ11184.1| Shikimate kinase:Replication factor C conserved
           domain:ATP/GTP-binding site motif A (P-loop):AAA
           ATPase:AAA ATPase, central r [Brucella melitensis biovar
           Abortus 2308]
 gi|189019927|gb|ACD72649.1| ATPase, AAA family [Brucella abortus S19]
 gi|260095715|gb|EEW79592.1| ATPase [Brucella abortus NCTC 8038]
 gi|260668483|gb|EEX55423.1| recombination factor protein RarA [Brucella abortus bv. 4 str. 292]
 gi|260672423|gb|EEX59244.1| recombination factor protein RarA [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260675057|gb|EEX61878.1| recombination factor protein RarA [Brucella abortus bv. 6 str. 870]
 gi|260873486|gb|EEX80555.1| recombination factor protein RarA [Brucella abortus bv. 9 str. C68]
 gi|260915809|gb|EEX82670.1| recombination factor protein RarA [Brucella abortus bv. 3 str.
           Tulya]
 gi|297175681|gb|EFH35028.1| recombination factor protein RarA [Brucella abortus bv. 5 str.
           B3196]
          Length = 437

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 78/348 (22%), Positives = 123/348 (35%), Gaps = 60/348 (17%)

Query: 1   MMDREGLL-SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M D        N  +       LRP+ L E TGQ        V        + +L  ++F
Sbjct: 1   MSDLFSTAADPNADRNRPLADRLRPKHLSEVTGQEHLTGPEGVLTRMI--ASGSLGSMVF 58

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDE 113
            GPPG GKTT+A+++A E  + F   S  + +   DL  +            + +LF+DE
Sbjct: 59  WGPPGTGKTTVARLLAGETDLAFEQISA-IFSGVADLKRVFEAARARRMSGRQTLLFVDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++   P MED  + L+    E PS       LSR                  
Sbjct: 118 IHRFNRAQQDSFLPVMEDGTVILIGATTENPSFELNAALLSR------------------ 159

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTG--LAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
                 +  + ++ E + T+++R  +  G  L + DEA   +   + G  R A  L   V
Sbjct: 160 ---ARVLTFHPHDSESIATLLKRAEEQEGQALPLDDEARASLIRMADGDGRAALTLAEEV 216

Query: 230 RDFAEVAHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISA 287
                V   +          + R A   DK      +L                   ISA
Sbjct: 217 WR--AVRPGEVFDAAKLQDVVQRRAPVYDKSQDGHYNL-------------------ISA 255

Query: 288 GLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                R +  D    Y+ +       P   G  L+ +A + +G+  P 
Sbjct: 256 LHKSVRGSDPDAALYYLSRMFDAGEDPLYIGHRLVRMAVEDIGLADPQ 303


>gi|304391485|ref|ZP_07373427.1| replication-associated recombination protein A [Ahrensia sp.
           R2A130]
 gi|303295714|gb|EFL90072.1| replication-associated recombination protein A [Ahrensia sp.
           R2A130]
          Length = 440

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 68/328 (20%), Positives = 117/328 (35%), Gaps = 53/328 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP+TL+E  GQ              +A   +L  ++F GPPG GKTT+A+++A 
Sbjct: 21  PLADRLRPKTLDEVVGQDHLLGENGALRRMLEA--PSLGSMVFWGPPGSGKTTVARLLAD 78

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
           E   +F   S        + K  + A +      R +LF+DEIHR +   ++   P MED
Sbjct: 79  EGEHHFEQISAIFTGVADLKKVFEQARIRAGNGRRTLLFVDEIHRFNRAQQDSFLPVMED 138

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             + L+    E PS       LSR                        +    ++ + L+
Sbjct: 139 GTITLIGATTENPSFELNAAVLSR---------------------ARVLTFRPHDDDSLR 177

Query: 190 TIVQRGA--KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           +++ R    +   L +TD+A   +   + G  R    L+      A     +T   E   
Sbjct: 178 SLMARAETTEGRALPLTDDARESLLRMADGDGRAVLTLIEEAWRAA--RDGETFDVEQLQ 235

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
             + R A       +     ++ + +   G                 +  D    Y+ + 
Sbjct: 236 EIVQRRAPIYDKAQEGHYNLISALHKAVRG-----------------SDPDAALYYLTRM 278

Query: 308 GFIQRTP--RGRLLMPIAWQHLGIDIPH 333
                 P    R L+ +A + +G   P 
Sbjct: 279 MDAGEDPLFLARRLVRMASEDIGQADPQ 306


>gi|209884845|ref|YP_002288702.1| AAA ATPase, central region [Oligotropha carboxidovorans OM5]
 gi|209873041|gb|ACI92837.1| AAA ATPase, central region [Oligotropha carboxidovorans OM5]
          Length = 443

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 74/342 (21%), Positives = 115/342 (33%), Gaps = 56/342 (16%)

Query: 6   GLLSRNVSQEDADI---SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
            L +    ++DA       LRPR L +  GQ              + R   L  ++F GP
Sbjct: 11  NLFAAAGLEQDAPRPLPERLRPRQLSDVVGQDHILGPDGALTRMLETR--TLGSLVFWGP 68

Query: 63  PGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           PG GKTT+A+++A    ++F   S        + K  D A          +LF+DE+HR 
Sbjct: 69  PGTGKTTVARLLADATELHFEQISAVFSGVADLKKVFDTARARRETGKGTLLFVDEVHRF 128

Query: 118 SIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
           +   ++   P MED  + L+    E PS       LSR  ++   +        L  R  
Sbjct: 129 NRAQQDSFLPVMEDGTVVLVGATTENPSFELNAALLSRARVLVFHSLDDAAIEKLYAR-- 186

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
                        + I  R      L +  +A   +   + G  R A  L+  V   A  
Sbjct: 187 ------------AEEIEGR-----PLPLDADARAVLVRMADGDGRAALTLVEEVWRAARA 229

Query: 236 AHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
              +          L R A   DK      +L                   ISA     R
Sbjct: 230 N--EVFDAAQLQDILQRRAPIYDKSADGHYNL-------------------ISALHKSVR 268

Query: 294 DAIEDLIEPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
            +  D    Y  +       P    R ++ +A + +G+  P 
Sbjct: 269 GSDPDAALYYFARMLDAGEDPLFLARRVVRMAVEDIGMADPQ 310


>gi|225352769|ref|ZP_03743792.1| hypothetical protein BIFPSEUDO_04399 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225156376|gb|EEG69945.1| hypothetical protein BIFPSEUDO_04399 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 458

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 88/361 (24%), Positives = 137/361 (37%), Gaps = 73/361 (20%)

Query: 5   EGLLSRNVSQED---ADISLLRPRTLEEFTGQVEACSNLKVFIE----AAKARAEALDHV 57
           E L     + ED        +RP +++E  GQ                A+K    A   +
Sbjct: 3   EDLFGAMDAPEDMTRPLAVRMRPSSVDEVVGQSRVLGQGSPLRRLANPASKGSLTAPSSI 62

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLF 110
           +  GPPG+GKTTLA +VA++ G  F   S  V +   D+  +L    DR        VLF
Sbjct: 63  ILFGPPGVGKTTLAYIVAKQSGRVFEELSA-VTSGVKDVRDVLRRAHDRLVAEGKETVLF 121

Query: 111 IDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           IDE+HR S   ++ L P++E+  +  +    E PS   +K  LSR  ++   +       
Sbjct: 122 IDEVHRFSKSQQDALLPSVENRDVTFIAATTENPSFSIIKPLLSRSVVVKLES------- 174

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAK-----LTGLAVTDEAACEIAMRSRGTPRIAG 223
                          E +DLKT+++R  +        + + DEA  EI   + G  R   
Sbjct: 175 --------------LEPDDLKTLIKRAIESERGLKNEVKINDEAVDEIVRMAGGDARKTL 220

Query: 224 RLLRRVR-----DFAEVAHAK--TITREIADAALLR--LAIDKMGFDQLDLRYLTMIARN 274
            +L         D A     K   IT ++    +    +  DK G D  D+         
Sbjct: 221 TILEAAAGALTGDQARKKGTKRPIITPDVVSQVMDVATVRYDKDGDDHYDV--------- 271

Query: 275 FGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
                     ISA +   R +  D    Y+ +       PR   R +M  A + +G+  P
Sbjct: 272 ----------ISAFIKSMRGSDPDATMHYLARMLRAGEDPRFIARRIMIAASEEVGMAAP 321

Query: 333 H 333
            
Sbjct: 322 Q 322


>gi|331269735|ref|YP_004396227.1| ATPase [Clostridium botulinum BKT015925]
 gi|329126285|gb|AEB76230.1| ATPase, AAA family [Clostridium botulinum BKT015925]
          Length = 419

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 69/348 (19%), Positives = 123/348 (35%), Gaps = 52/348 (14%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD   L  +  S        +RP+ L EF GQ       K+     +   + L  ++  G
Sbjct: 1   MDLFDLALKKSSTNKPLAERMRPKNLNEFFGQQHIVGKGKLLRRLIET--DNLTSIILYG 58

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEI 114
           PPG+GKTTLA +++ +    F   +    A   ++   +   E+       R + FIDEI
Sbjct: 59  PPGVGKTTLAHIISLDTKSEFVKLNA-TSAGVKEIREYIKKAEEVLKFYGKRTIFFIDEI 117

Query: 115 HRLSI-IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           H L     ++ L  A+E   + L+    E P     +  LSR  +    +        L+
Sbjct: 118 HSLKKGSQQDALLEAIEKGIVILIGATTENPYFEINRALLSRSKIFQLES--------LK 169

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
           +   + +      ++       RG     + + +E    +A  S G  R +   L     
Sbjct: 170 ENEIVEV------LQMALKDSTRGYGNLKINIDEEVLKIVAKLSGGDARGSLNTLELAIL 223

Query: 232 FAEVAHAKT--ITREIADAALL--RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISA 287
                   +  I +EI    +    +  D  G +  D+                   +SA
Sbjct: 224 STPRRSDGSIAINKEIIKECIQKPMVNYDSTGDNHYDI-------------------VSA 264

Query: 288 GLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +   R +  D    +  +       PR   R L+  A + +G+  P+
Sbjct: 265 FIKSIRGSNPDAALYWFGRMVVGGEDPRFIVRRLIVHASEDIGMKDPN 312


>gi|295399332|ref|ZP_06809314.1| AAA ATPase central domain protein [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|294978798|gb|EFG54394.1| AAA ATPase central domain protein [Geobacillus thermoglucosidasius
           C56-YS93]
          Length = 431

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 67/324 (20%), Positives = 120/324 (37%), Gaps = 41/324 (12%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +     +RPR ++E  GQ           +  K     +  +L  G PG+GKT+LA  +A
Sbjct: 6   EPLSVRMRPRNIDEIVGQQHIIGPHTALYKMIKNGH--VPSLLLYGEPGVGKTSLAHAIA 63

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             +  +F + +    +   ++  ++   +     +LFIDEIHR +   ++ L P +E   
Sbjct: 64  GTVQRDFFAINATA-SGKKEMEEVVETAKLTGNVILFIDEIHRFNKAQQDYLLPHIEQGL 122

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + L+    E P         SR   I    R+        D   I +R   ++ +     
Sbjct: 123 ITLIGATTENPFHEVNPAIRSRCGQIKQLKRLEP------DDILILLRRALHDRD----- 171

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
             RG     + + +     IA  S G  R+A  LL  +  +A      ++     D   +
Sbjct: 172 --RGLGTLAIDMEERLLSMIAEASGGDARLALNLLETII-YASQKDDGSV---HVDEQTV 225

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ---G 308
           R  ++  GF                 G      +SA     R +  D    Y+ +    G
Sbjct: 226 RECVENRGFTH------------DKKGDTYYSLLSAFQKSVRGSDVDAALHYLARLLEGG 273

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIP 332
            +      R L+ IA++ +G+  P
Sbjct: 274 DLAAVC--RRLLVIAYEDIGLANP 295


>gi|319442139|ref|ZP_07991295.1| recombination factor protein RarA [Corynebacterium variabile DSM
           44702]
          Length = 457

 Score =  144 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 76/325 (23%), Positives = 120/325 (36%), Gaps = 53/325 (16%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            +RPRTL+E  GQ                R E    V+  GPPG GKTT+A ++A   G 
Sbjct: 40  RMRPRTLDEVVGQSHVLGESSPLRRLIDGRGE--SSVILYGPPGTGKTTVASLIAGGSGR 97

Query: 81  NFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQL 134
            F + S  + +   ++ +++ +   R       VLFIDE+HR S   ++ L  A+E+  +
Sbjct: 98  RFEALSA-LNSGVKEVRSVIADARRRLADGIPTVLFIDEVHRFSKTQQDALLSAVENRTV 156

Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            L+    E PS   V   LSR  L+          + L  R         Y+        
Sbjct: 157 LLVAATTENPSFSVVAPLLSRSLLVQLKPLEPADISTLLRR--AIEDPRGYDG------- 207

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI---TREIADAA 249
                   + +TDEA   +   + G  R A   L    +  E +  +          D A
Sbjct: 208 -------KITLTDEACDRLTALAAGDARRALTYLEAAAESVEDSGGEVTVDVVARSTDKA 260

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           + R   D+ G    D+                   +SA +   R +  D    Y+ +   
Sbjct: 261 VAR--YDRDGDQHYDI-------------------VSAFIKSIRGSDPDAALHYLARMID 299

Query: 310 IQRTPR--GRLLMPIAWQHLGIDIP 332
               PR   R L+  A + +G+  P
Sbjct: 300 AGEDPRFISRRLVVHASEDIGMADP 324


>gi|90417739|ref|ZP_01225651.1| ATPase, AAA family [Aurantimonas manganoxydans SI85-9A1]
 gi|90337411|gb|EAS51062.1| ATPase, AAA family [Aurantimonas manganoxydans SI85-9A1]
          Length = 452

 Score =  144 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 76/327 (23%), Positives = 117/327 (35%), Gaps = 51/327 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRPR L E  GQ        V     +A   +L  ++F GPPG GKTT+A+++A 
Sbjct: 32  PLADRLRPRQLGEVVGQEHLTGEGGVLSRMLEA--TSLGSMIFWGPPGTGKTTVARLLAH 89

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
           E+   F   S        + K  + A L  +   R +LF+DEIHR +   ++   P MED
Sbjct: 90  EVDYAFEQISAIFSGVADLKKMFETARLRRSNGRRTLLFVDEIHRFNRAQQDSFLPVMED 149

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             + L+    E PS       LSR  ++            L +R      +     E  +
Sbjct: 150 GTVVLVGATTENPSFELNAALLSRARVLTFKPHGSASLVKLLERAEATEGMALPLNEQAR 209

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            ++ R                          +A    R     AE     +   EI DAA
Sbjct: 210 AVLLR--------------------------MADGDGRAALTLAEEVWRASRKGEIFDAA 243

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVG-IETISAGLSEPRDAIEDLIEPYMIQQG 308
            L+  + +              A  +  G  G    ISA     R +  D    ++ +  
Sbjct: 244 GLQEIVQRR-------------APVYDKGQDGHYNLISALHKSVRGSDPDAALYWLCRML 290

Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIPH 333
                P   GR L+ +A + +G+  P 
Sbjct: 291 DAGENPLYLGRRLVRMASEDIGLADPR 317


>gi|134299288|ref|YP_001112784.1| recombination factor protein RarA [Desulfotomaculum reducens MI-1]
 gi|134051988|gb|ABO49959.1| Recombination protein MgsA [Desulfotomaculum reducens MI-1]
          Length = 438

 Score =  144 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 78/344 (22%), Positives = 123/344 (35%), Gaps = 45/344 (13%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD     SR+  Q       +RPR++++F GQ       K+   A +A  + L  ++  G
Sbjct: 1   MDLFS-SSRSSLQAAPLAERMRPRSIDDFIGQEHIVGKGKLLRRAIEA--DKLGSIILYG 57

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEI 114
           PPG GKTTLA +++ E+          V A   ++   +            R + FIDEI
Sbjct: 58  PPGSGKTTLATIIS-EMTEANFVKINAVSAGVAEIRTEIKKARDNLNFYGKRTIFFIDEI 116

Query: 115 HRLSI-IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           H L     ++ L  A+E  ++ L+    E P        LSR                  
Sbjct: 117 HSLKRGAQQDCLLEAVEKGEVTLIGATTENPYFELNGALLSRSR---------------- 160

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
                  +L  +  +DL  +VQR  K     +            +    ++G   R V +
Sbjct: 161 -----IFQLAEHTEDDLYRLVQRALKDEEQGLGMYRVKLAEDAMKHFIEMSGGDGRNVLN 215

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
             E+A   T   E       R    ++  D    RY     R    G    + ISA +  
Sbjct: 216 ALELAVLSTAPTEDGY----RHITLEVAEDSTQQRY----IRYDKSGDNHYDVISAFIKS 267

Query: 292 PRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            R +  D    Y  +       PR   R L+  A + +G+  P 
Sbjct: 268 IRGSDPDAALHYYARMTAAGEDPRFIVRRLIVHASEDIGMADPQ 311


>gi|312132192|ref|YP_003999532.1| aaa atpase central domain protein [Leadbetterella byssophila DSM
           17132]
 gi|311908738|gb|ADQ19179.1| AAA ATPase central domain protein [Leadbetterella byssophila DSM
           17132]
          Length = 422

 Score =  144 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 67/328 (20%), Positives = 119/328 (36%), Gaps = 55/328 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RPR L+E+ GQ       K   +A +  +  L  ++  GPPG+GKT+LA ++A 
Sbjct: 6   PLAERIRPRNLDEYVGQEHILGPGKPLRKAIE--SGMLPSMILWGPPGVGKTSLAFLIA- 62

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           E+          + A   DL  +L         +LFIDEIHR +   ++ L  A+E  ++
Sbjct: 63  EVSKRQFHNLSAISAGVKDLREVLARPSGLFPPILFIDEIHRFNKSQQDALLGAVEKGKV 122

Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            L+    E PS       LSR  +             + + FG          E+L+ +V
Sbjct: 123 TLIGATTENPSFEVNSALLSRCQVY------------ILEAFG---------QEELRCLV 161

Query: 193 QRGA---KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            R     +L      +    +   R  G        L  +   A+  +      +    +
Sbjct: 162 DRALSEDELLKTLPIEVIGTDSLFRHSGGDGRKLLNLLELVILAQQGNDPIKIDDETVES 221

Query: 250 LLRL---AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           L++      DK G    D+                   +SA +   R +  +    +M +
Sbjct: 222 LVQKNFARYDKSGEQHYDI-------------------VSAFIKSIRGSDPNAALYWMAR 262

Query: 307 QGFIQRTPR--GRLLMPIAWQHLGIDIP 332
                   +   R ++  A + +G+  P
Sbjct: 263 MLVAGEDVKFIARRMLIAASEDIGLANP 290


>gi|156382458|ref|XP_001632570.1| predicted protein [Nematostella vectensis]
 gi|156219628|gb|EDO40507.1| predicted protein [Nematostella vectensis]
          Length = 432

 Score =  144 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 66/346 (19%), Positives = 125/346 (36%), Gaps = 58/346 (16%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP +LE++ GQ +   N   L+  +EA +     +  ++  GPPG GKTTLA +VA   
Sbjct: 1   MRPTSLEDYVGQEQVLGNSCLLRTLLEANE-----VPSMVLWGPPGCGKTTLAHIVANNA 55

Query: 79  GVNFRSTS---GPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPA 128
                +         +   D+  ++   +        + +LF+DEIHR +   ++   P 
Sbjct: 56  RKTTTTRFVTLSATTSGINDIKEVVKVAKNEQQMFRRKTILFVDEIHRFNKTQQDTFLPH 115

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ----DRFGIPIR--- 179
           +E+  + L+    E PS +     LSR  +I            +     +  G  I    
Sbjct: 116 VENGTITLIGATTENPSFQLNTALLSRCRVIVLDKLSSEHLQRILCRAVENMGCVIENKS 175

Query: 180 ------LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                 +          I++R A              +A    G  R+A   L+     +
Sbjct: 176 STGKDSMEMDSDSPTVAIIERDA-----------ITALANLCDGDARVALNGLQLAVQ-S 223

Query: 234 EVAHAKTITREIADAALLRLAID----KMGFDQLDLRYLTMIARNFGGGPVGIETISAGL 289
           + + +    ++       R+ ++    K G  +  L Y      +F         ISA  
Sbjct: 224 QTSGSSLRRQKQNAPDPSRVRVNVAHVKEGLQRTHLLYDRAGEEHF-------NIISALH 276

Query: 290 SEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
              R +  +    ++ +       P    R L+  A + +G+  P+
Sbjct: 277 KSLRGSDGNAALYWLARMLTAGEDPLYIARRLVRFASEDVGLADPN 322


>gi|307183660|gb|EFN70363.1| ATPase WRNIP1 [Camponotus floridanus]
          Length = 554

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 63/343 (18%), Positives = 121/343 (35%), Gaps = 38/343 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP +L  F GQ       +  +     + E + +++  GPPG GKT+LA V+A 
Sbjct: 111 PLAEQMRPISLLNFVGQKHILGP-RTMLSELLQKKE-IPNMILWGPPGCGKTSLANVIAH 168

Query: 77  ELGVNFRSTSGPV-----------IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
               +       V           + +   +AA       + ++F+DEIHR +   +++ 
Sbjct: 169 MCKNDTSRKLRYVKLSAAMAGVQEVKEVISVAANHAKFAQQTIVFMDEIHRFNKTQQDVF 228

Query: 126 YPAMEDFQLDLM--VGEGPSARSVKINLSRFT-----LIAATTRVGLLTNPLQDRFGIPI 178
            P +E   + L+    E PS       LSR        ++    V +L   +    GI  
Sbjct: 229 LPHVESGTITLIGATTENPSFSLNSALLSRCRVIVLHKLSVANLVSILKRAVISLEGIIH 288

Query: 179 RLNFYEIEDLK------TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
             +   ++  +       I  + +  T   + +     +A    G  RIA   L      
Sbjct: 289 MSDKSTLQSEESTSKGNKIDMQPSYNTKFIIDEPTIEWLAETCDGDARIALGGLEMA--- 345

Query: 233 AEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEP 292
                    ++   +  LL +    +  + ++             G    +TISA     
Sbjct: 346 -------VRSKAPNEEDLLDVGPAIITLNDVEESLKKTHMLYDKKGDQHYDTISALHKSV 398

Query: 293 RDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           R + E+    ++ +       P    R L+ +A + +G+  P 
Sbjct: 399 RASDENASLYWLTRMISGGEDPVYIARRLVRMASEDIGLADPK 441


>gi|56421102|ref|YP_148420.1| recombination factor protein RarA [Geobacillus kaustophilus HTA426]
 gi|56380944|dbj|BAD76852.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
          Length = 431

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 69/322 (21%), Positives = 115/322 (35%), Gaps = 37/322 (11%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +     +RPRT++E  GQ           +  K     +  +L  G PG GKT+LA  +A
Sbjct: 6   EPLAWRMRPRTIDEIVGQQHIIGPSTPLYKMVKKGH--VPSLLLYGEPGTGKTSLAYAIA 63

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           R  G  + + +    A   ++   +         VLFIDEIHRL+   +++L P +E   
Sbjct: 64  RTAGREWVAINATA-AGKKEIEEAVEAARWSGNVVLFIDEIHRLNKAQQDVLLPHLESGL 122

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + L+    E P         SR   I        L     D   I ++    + E     
Sbjct: 123 VTLIGATTENPFHEVNPAIRSRCGQI------QQLKPLKPDDLMIILKRALADPE----- 171

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
             RG     + + +     IA  + G  R+A  LL      A+  H +    E   A+  
Sbjct: 172 --RGVGEPPVVIDESLLWRIAEAAGGDARVALSLLEAAVAAADERHGRLYIDEDIVASCT 229

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ-QGFI 310
                    D+    Y ++              +SA     R +  D    Y+ +     
Sbjct: 230 ANRGFTH--DKYGDHYYSL--------------LSAFQKSVRGSDADAALHYLARLLEGG 273

Query: 311 QRTPRGRLLMPIAWQHLGIDIP 332
                 R L+ +A++ +G+  P
Sbjct: 274 DLASVCRRLLVMAYEDIGLANP 295


>gi|254470398|ref|ZP_05083802.1| ATPase, AAA family protein [Pseudovibrio sp. JE062]
 gi|211960709|gb|EEA95905.1| ATPase, AAA family protein [Pseudovibrio sp. JE062]
          Length = 436

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 73/347 (21%), Positives = 119/347 (34%), Gaps = 59/347 (17%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D       +  ++      +RPR LE+  GQ        +       R+ +L  ++F 
Sbjct: 1   MSDLFSANGMDQLEDRPLADRMRPRVLEDVVGQGHLLGEDGILSRM--LRSGSLGSLIFW 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEI 114
           GPPG GKTT+A+++A    + F   S  + +   DL       +       R +LF+DEI
Sbjct: 59  GPPGTGKTTVARLLADATDLEFEQISA-IFSGVADLKKCFERAKGRRISSKRTLLFVDEI 117

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +    +   P MED  + L+    E PS       LSR                   
Sbjct: 118 HRFNRAQLDSFLPVMEDGTITLVGATTENPSFELNAALLSR------------------- 158

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLT--GLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
                +       + L  +++R  +     L + ++A   +   + G  R A  L   V 
Sbjct: 159 --SHVLTFQSLNEDALIDLLKRAEEEMGRELPLDEDARLSLVRMADGDGRSALTLAEDVW 216

Query: 231 DFAEVAHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAG 288
             A     +    E     + R A   DK      +L                   ISA 
Sbjct: 217 RTA--GEDEVFDTERLAEVVQRRAPIYDKTKDGHYNL-------------------ISAL 255

Query: 289 LSEPRDAIEDLIEPYMIQQGFIQRTPRG--RLLMPIAWQHLGIDIPH 333
               R +  D    +M +       P    R L  +A + +G+  P+
Sbjct: 256 HKSIRGSDPDAALYWMCRMLEGGEDPLYIIRRLTVMASEDIGMADPN 302


>gi|84685387|ref|ZP_01013285.1| ATPase, AAA family protein [Maritimibacter alkaliphilus HTCC2654]
 gi|84666544|gb|EAQ13016.1| ATPase, AAA family protein [Rhodobacterales bacterium HTCC2654]
          Length = 436

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 72/330 (21%), Positives = 116/330 (35%), Gaps = 58/330 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP  L++  GQ                 + +L  ++  GPPG+GKTT+A+++A 
Sbjct: 19  PLADRLRPAALDQVIGQEAVLGPEGPL--GVMLASGSLGSLILWGPPGVGKTTIARLLAD 76

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
              ++F   S        + K  + A +        +LF+DEIHR +   ++   P MED
Sbjct: 77  VTDLHFIQISAIFTGVTDLRKVFEAAKMRRQNGKGTLLFVDEIHRFNKAQQDGFLPHMED 136

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             + L+    E PS       LSR  +I                          E  DL+
Sbjct: 137 GTILLVGATTENPSFELNAAVLSRAQVITLKR---------------------LEPADLE 175

Query: 190 TIVQRGAKLTG--LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            + QR  +     L +T E    +   + G  R    L+ +V  +        + R+   
Sbjct: 176 RMAQRAERELDRALPLTGEGREALIEMADGDGRALLNLIEQVMAW---RVDGKLDRDALA 232

Query: 248 AALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
             L+R A   DK G    +L                   ISA     R +  D    +  
Sbjct: 233 TRLMRRAAQYDKSGDGHYNL-------------------ISALHKSVRGSDPDAALYWFT 273

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +       PR   R L  +A + +G+  P 
Sbjct: 274 RMLEGGEDPRFLARRLTRMAVEDIGLADPQ 303


>gi|295695736|ref|YP_003588974.1| AAA ATPase central domain protein [Bacillus tusciae DSM 2912]
 gi|295411338|gb|ADG05830.1| AAA ATPase central domain protein [Bacillus tusciae DSM 2912]
          Length = 472

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 88/348 (25%), Positives = 132/348 (37%), Gaps = 52/348 (14%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD          + +A ++  +RP TL+E  GQ E      +   A +A  + L  V+F 
Sbjct: 1   MDLFSYREEQERRVNAPLAVRMRPATLDELMGQEEIVGPGTLLRRAIEA--DRLTSVIFY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDE 113
           GPPG+GKTTLA+++A      F + S  V A   DL  ++ +  DR         LFIDE
Sbjct: 59  GPPGVGKTTLARLIAGYTRSVFVTLSA-VTAGIADLRRVVDDARDRLGMYGQKTTLFIDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++ L P MED  + L+    E P     K  LSR  + A           + 
Sbjct: 118 IHRFNKAQQDALLPHMEDGLVILIGATTENPYFEVNKALLSRSLVFALRPLTPEALKTIA 177

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPR--IAGRLLRRV 229
            R                   +RG     L V +EA         G  R  +    L  +
Sbjct: 178 RR--------------AIADKERGLGTMPLEVHEEALDHWVRYCEGDARRLLGALELAAL 223

Query: 230 RDFAEVAHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISA 287
               +      ITR +A+A++ R A   D+ G    D                   TISA
Sbjct: 224 TTAPDDRGRIVITRSVAEASIQRRAVVYDREGDAHYD-------------------TISA 264

Query: 288 GLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +   R +  D    ++ +       P    R L+ +A + +G   P 
Sbjct: 265 FIKSVRGSDPDAALLWLAKMLKAGEDPLFIARRLVILASEDIGNADPQ 312


>gi|239827838|ref|YP_002950462.1| recombination factor protein RarA [Geobacillus sp. WCH70]
 gi|239808131|gb|ACS25196.1| AAA ATPase central domain protein [Geobacillus sp. WCH70]
          Length = 430

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 67/324 (20%), Positives = 119/324 (36%), Gaps = 42/324 (12%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +     +RPR ++E  GQ           +  K     +  +L  G PG+GKT+LA  +A
Sbjct: 6   EPLSVRMRPRNIDEIVGQQHIIGPHTALYKMIK--NGYVPSLLLYGEPGVGKTSLAHAIA 63

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             +  +F + +    +   +L  ++   +     +LFIDEIHR +   ++ L P +E   
Sbjct: 64  GTVQRDFFAVNA-TTSGKKELEEVVETAKLTGNVILFIDEIHRFNKAQQDYLLPHIEQGL 122

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + L+    E P         SR   I    R+            I ++   ++ +     
Sbjct: 123 ITLIGATTENPFHEVNPAIRSRCGQIKQLKRLEP------ADILILLQRALHDRD----- 171

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
             RG     + + +     IA  S G  R+A  LL  +  +A     +    E      +
Sbjct: 172 --RGLGKLSIDMEERLLSMIAESSGGDARLALNLLEAIV-YASENDGQIRVAEQT----V 224

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ---G 308
           R  ++  GF                 G V    +SA     R +  D    Y+ +    G
Sbjct: 225 REFVENRGFTH------------DKKGDVYYSLLSAFQKSVRGSDVDAALHYLARLLEGG 272

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIP 332
            +      R L+ IA++ +G+  P
Sbjct: 273 DLAAVC--RRLLVIAYEDIGLANP 294


>gi|260593081|ref|ZP_05858539.1| ATPase, AAA family [Prevotella veroralis F0319]
 gi|260534967|gb|EEX17584.1| ATPase, AAA family [Prevotella veroralis F0319]
          Length = 400

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 76/332 (22%), Positives = 124/332 (37%), Gaps = 65/332 (19%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +     +RPRTL+E+ GQ        V      +    +   +  GPPG+GKTTLAQ++A
Sbjct: 2   EPLAERMRPRTLDEYIGQEHLVGQGAVLRRMIDSGH--ISSFILWGPPGVGKTTLAQIIA 59

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPA 128
            +L   F + S  V +   D+  ++   +          +LFIDEIHR S   ++ L  A
Sbjct: 60  HQLETPFYTLSA-VTSGVKDVREVIERAKSGRFFNSVSPILFIDEIHRFSKSQQDSLLGA 118

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           +E   + L+    E PS   ++  LSR  L    +                      E +
Sbjct: 119 VERGVVTLIGATTENPSFEVIRPLLSRCQLYVLKS---------------------LEKD 157

Query: 187 DLKTIVQRG------AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           DL  +VQR        K   + +++  A      S G  R    ++  +   A  +    
Sbjct: 158 DLLRLVQRAITEDTELKKLTIKLSETTAL--LRYSGGDARKLLNIIDLLV-SARASDEIV 214

Query: 241 ITREIADAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
           IT E+ +  L     A DK G    D   ++   ++  GG                   D
Sbjct: 215 ITDELVEKELQENPLAYDKDGEMHYD--LVSAFIKSIRGG-----------------NAD 255

Query: 299 LIEPYMIQQGFIQRTPR--GRLLMPIAWQHLG 328
               +M +       PR   R ++  A + +G
Sbjct: 256 AALYWMARMIEGGEDPRFIARRVVISAAEDIG 287


>gi|333030271|ref|ZP_08458332.1| AAA ATPase central domain protein [Bacteroides coprosuis DSM 18011]
 gi|332740868|gb|EGJ71350.1| AAA ATPase central domain protein [Bacteroides coprosuis DSM 18011]
          Length = 423

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 70/329 (21%), Positives = 123/329 (37%), Gaps = 51/329 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP +L+ + GQ           +  +     +   +  GPPG+GKTTLA++++ 
Sbjct: 3   PLAERLRPTSLDNYIGQQHLVGPNAPLRKMIE--GGRISSFILWGPPGVGKTTLAKIISH 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAM 129
           +L V F + S  V +   D+  ++   +          +LFIDEIHR S   ++ L  A+
Sbjct: 61  QLDVPFYTLSA-VTSGVKDVREIIQKAKSNRFFNQASPILFIDEIHRFSKSQQDSLLGAV 119

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E   + L+    E PS   ++  LSR  L    +                        ED
Sbjct: 120 EQGVVTLIGATTENPSFEVIRPLLSRSQLYVLKS---------------------LGKED 158

Query: 188 LKTIVQRGAKL-TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           L  ++ R  +    L        E     R +   A +LL  +   A  ++ + I     
Sbjct: 159 LIQLLHRAIETDFILKEKKIELKETDAMLRYSGGDARKLLNILELIATSSNIEPIVI-TD 217

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           D     L  + + +D               GG +  + ISA +   R +  D    ++ +
Sbjct: 218 DLVTNSLQQNPLAYD--------------KGGELHYDIISAFIKSIRGSDPDGAIYWLAR 263

Query: 307 QGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                  P+   R L+  A + +G+  P+
Sbjct: 264 MVEGGEDPKFIARRLVISASEDIGLANPN 292


>gi|325120694|emb|CBZ56249.1| putative ATPase, AAA family domain containing protein [Neospora
           caninum Liverpool]
          Length = 1056

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 69/370 (18%), Positives = 118/370 (31%), Gaps = 76/370 (20%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP +L+EF GQ E+    +  +         +  ++  GPPG GKTTLA +  R
Sbjct: 579 PLAERLRPTSLDEFVGQTESIQGGRGSVRELMEAGH-IPSLILWGPPGCGKTTLALLAGR 637

Query: 77  ELGVNFRSTSGPVIAK-------AGDLAALLTNL-------EDRDVLFIDEIHRLSIIVE 122
                   +  PV  K         D+  ++          + + +LF+DEIHR +   +
Sbjct: 638 CTNRKSPLSLPPVFKKMSAVTCGVNDVRKVVQEALTLRATTKQKTILFLDEIHRFNKAQQ 697

Query: 123 EILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           + L P +E   + L+    E PS    +  LSR  +                        
Sbjct: 698 DALLPHVESGTVTLIGATTENPSFEVNRALLSRCRVCKL--------------------- 736

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
                ++L  I+QR AK   + VT+ A   +   + G  R A  +L              
Sbjct: 737 EPLTEDNLTVILQRAAKEENVTVTEAAVRVLCRLADGDARRALNMLENAIHHERSEVKTK 796

Query: 241 ITREIADAALLRLAID-------------------------------KMGFDQLDLRYLT 269
              +    A  +                                   +     +D+  L 
Sbjct: 797 DASKQQREACPQPLHSSSPPPSASPPSPSPSQAPPGCLSSREDGVCRERQETVVDVSSLE 856

Query: 270 MIAR-----NFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPI 322
            +A               + ISA     R + E     Y+ +       P    R ++ +
Sbjct: 857 SVATKSHLIYDKNRDCYYDLISALHKSVRGSDEHAAVYYLTRMLEAGEDPLKIARRIVRM 916

Query: 323 AWQHLGIDIP 332
           A + +G+  P
Sbjct: 917 ASEDIGLADP 926


>gi|221195770|ref|ZP_03568823.1| recombination factor protein RarA [Atopobium rimae ATCC 49626]
 gi|221184244|gb|EEE16638.1| recombination factor protein RarA [Atopobium rimae ATCC 49626]
          Length = 465

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 75/337 (22%), Positives = 122/337 (36%), Gaps = 49/337 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP+TLE + GQ +A         A +   + L  VL  GP G GKTTLA ++A 
Sbjct: 18  PLAARMRPQTLEGYVGQTQAVGEGSWLRRAIE--HDTLSSVLLYGPAGTGKTTLAHIIAN 75

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAM 129
                F   S  +     DL   +   E R        +LFIDEIHR +   ++ L  A+
Sbjct: 76  STHAAFVEVSA-ITGTVKDLRREIEAAESRLLTAGTRTILFIDEIHRFNRSQQDALLHAV 134

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ED  + L+    E P        +SR  ++           PL D             E 
Sbjct: 135 EDRTVVLIGATTENPYFEVNSALISRSRVVELY--------PLDD-------------EA 173

Query: 188 LKTIVQRGAKLTG-----LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           +  +++R  + +        +  +A  EI   + G  R A   L      A  A   T T
Sbjct: 174 ISHLIERACESSDGLAGAYTLNPDALQEIVTLAGGDARAALTSLELASQMASPA-ENTET 232

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIAR----NFGGGPVGIETISAGLSEPRDAIED 298
           ++     + +     +         L    R        G +  + ISA +   R +  D
Sbjct: 233 KDADQKDVGQKEPIVITLQH----VLEANPRRGLPYDKAGDMHYDVISAFIKSMRGSDPD 288

Query: 299 LIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
               ++ +       P+   R +M +A + +G   P 
Sbjct: 289 AALYWLARMIDAGEDPKFIARRIMILASEDIGNADPE 325


>gi|159042869|ref|YP_001531663.1| recombination factor protein RarA [Dinoroseobacter shibae DFL 12]
 gi|157910629|gb|ABV92062.1| AAA ATPase central domain protein [Dinoroseobacter shibae DFL 12]
          Length = 436

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 74/342 (21%), Positives = 114/342 (33%), Gaps = 51/342 (14%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           + DR+G    +          LRP  L E  GQ             A     AL  V+F 
Sbjct: 4   LFDRDGAAPPDDGP-RPLADRLRPAHLSEVIGQDHLLGPDGPL--GAMLANRALSSVIFW 60

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIH 115
           GPPG+GKTT+A+++A E  + F   S      P + K  + A L        +LF+DEIH
Sbjct: 61  GPPGVGKTTIARLLAAETDLAFVQISAIFTGVPDLRKVFEAARLRRQGGQGTLLFVDEIH 120

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P MED  + L+    E PS       LSR  ++            L  R
Sbjct: 121 RFNKAQQDGFLPHMEDGTIVLVGATTENPSFELNAAVLSRAQVLVLHRLDAAALEALLAR 180

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
               + ++                   L +   A   +   + G  R    L+ +V    
Sbjct: 181 AEALLGVS-------------------LPLEPGARAALIEMADGDGRALLNLIEQVA--- 218

Query: 234 EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
                 + T E    A            Q D             G      ISA     R
Sbjct: 219 ------SWTPEAPLDAKALGQRLSQRAAQYD-----------KSGDGHYNLISALHKSVR 261

Query: 294 DAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +  D    ++ +       PR   R +  ++ + +G+  P 
Sbjct: 262 GSDPDAALYWLARMLTAGEDPRYLMRRITRMSVEDIGLADPQ 303


>gi|145219908|ref|YP_001130617.1| recombination factor protein RarA [Prosthecochloris vibrioformis
           DSM 265]
 gi|145206072|gb|ABP37115.1| Recombination protein MgsA [Chlorobium phaeovibrioides DSM 265]
          Length = 445

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 75/332 (22%), Positives = 123/332 (37%), Gaps = 46/332 (13%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           N S        +RPR+L++  GQ                    L  ++F GPPG GKTTL
Sbjct: 20  NPSPFQPLAERVRPRSLDDMRGQEHLLGPDGPLRR--FLSGGQLPSMIFWGPPGTGKTTL 77

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEI 124
           A++ A  LG  F + S  + +   ++   L++        +R +LFIDEIHR +   ++ 
Sbjct: 78  AEICASALGFRFETLSA-IDSGVKEVRRALSDAASARERGERTILFIDEIHRFNKAQQDT 136

Query: 125 LYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           L  A+E   + L+    E PS       LSR  +         +  PL            
Sbjct: 137 LLHAIEQGVVVLIGATTENPSFEVNAALLSRMQV--------YILKPL------------ 176

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
              +D+ +++QR      L  + +   E         R AG   R+  +  E A   ++ 
Sbjct: 177 -TEDDIASLIQRAMDGDSLFASRKVELEDPGFLL---RFAGGDARKALNALEAA--MSLV 230

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            E      L   + +         Y         GG    +TISA +   R +  D    
Sbjct: 231 PEGDGPVQLTADVFERALQHRAPMY-------DKGGEAHYDTISAFIKSLRGSDPDAALF 283

Query: 303 YMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           ++ +       P+   R L+  A + +G   P
Sbjct: 284 WLARMIDGGEDPKFIARRLVIFASEDVGNADP 315


>gi|228987651|ref|ZP_04147765.1| hypothetical protein bthur0001_43210 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228772111|gb|EEM20563.1| hypothetical protein bthur0001_43210 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 428

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 76/327 (23%), Positives = 122/327 (37%), Gaps = 43/327 (13%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           +      +RP  ++E  GQ       K      +A       ++  GPPG GKT++A  +
Sbjct: 2   KQPLAHRMRPTNIQEIIGQQHLVGEEKFLWRMVQANH--FQSMILYGPPGTGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           A   G  FR  +  V     D+  ++   +     VL +DE+HRL    ++ L P +E  
Sbjct: 60  AGSTGTPFRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESG 118

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
            L L+      P         SR        ++  L    +D   I ++    + E    
Sbjct: 119 LLTLIGATTSNPFHAINSAIRSRC-------QIFELHALTEDDLLIGLKRALEDKE---- 167

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR--DFAEVAHAKTITREIADA 248
              +G     + VT EA    A  S G  R A   L       F     A  IT E A+ 
Sbjct: 168 ---KGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLETAEE 224

Query: 249 ALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
            L + +   DK G    D+  L+   ++  G  V              A+  L    +I+
Sbjct: 225 CLQKKSFVHDKGGDAHYDV--LSAFQKSVRGSDV------------NAALHYLAR--LIE 268

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            G +Q    GR L+ +A++ +G+  P 
Sbjct: 269 AGDLQSI--GRRLLIMAYEDIGLASPQ 293


>gi|320333638|ref|YP_004170349.1| AAA ATPase central domain-containing protein [Deinococcus
           maricopensis DSM 21211]
 gi|319754927|gb|ADV66684.1| AAA ATPase central domain protein [Deinococcus maricopensis DSM
           21211]
          Length = 438

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 78/333 (23%), Positives = 121/333 (36%), Gaps = 64/333 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRPRT+EE  GQ       +         +  L  ++  GPPG+GKTTLA+++AR
Sbjct: 9   PLAERLRPRTIEEVVGQRHLLGPGRPLTRT--LASGRLGSLILWGPPGVGKTTLARLLAR 66

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAME 130
            +  +F + S  V A   D+   +   E         +LF+DEIHR +   ++ L P +E
Sbjct: 67  AVDAHFIALSA-VSAGVKDIREAVGEAERERGRGRRTLLFLDEIHRFNKAQQDALLPHVE 125

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
              L L+    E PS        SR   +                            ED+
Sbjct: 126 SGLLTLIGATTENPSFEVNPALRSRARTLVLEA---------------------LTPEDI 164

Query: 189 KTIVQRGA----KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           + +++R       L G+    EA   +A  + G  R A   L      A       +T E
Sbjct: 165 RGLLERALADERGLPGVTAQPEALDLLARLADGDARRALSTLEVASTLA-----DPVTPE 219

Query: 245 IADAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
               A  R   A+DK G D  +L                   ISA     R +  D    
Sbjct: 220 AITEAFGRHLPAMDKNGEDFYNL-------------------ISALHKSVRGSHVDASLY 260

Query: 303 YMIQQ--GFIQRTPRGRLLMPIAWQHLGIDIPH 333
           ++ +   G        R ++ +A + +G+  P 
Sbjct: 261 WLARMVEGGADTGYVARRVVRMASEDIGLADPQ 293


>gi|167645615|ref|YP_001683278.1| recombination factor protein RarA [Caulobacter sp. K31]
 gi|167348045|gb|ABZ70780.1| AAA ATPase central domain protein [Caulobacter sp. K31]
          Length = 433

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 68/343 (19%), Positives = 110/343 (32%), Gaps = 54/343 (15%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D                  LRP+TL+E  GQ             A AR   L  ++  
Sbjct: 1   MSDLFQAAGLTPHAPSPLADRLRPQTLDEVVGQEHLLGPEGPIGRMAAAR--RLASMILW 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIH 115
           GPPG GKTT+A+++A+  G  F+  S        + KA + A +        +LF+DEIH
Sbjct: 59  GPPGTGKTTIARLLAKAGGYEFQQISAVFSGVADLKKAFEQARMRRQAGQSTLLFVDEIH 118

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P +E+  + L+    E PS       LSR  +             L   
Sbjct: 119 RFNRAQQDGFLPFVEEGIVTLVGATTENPSFELNGALLSRCQVFVLKRLDDEALEALL-- 176

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                            I    A+   L +  +A   +   + G  R             
Sbjct: 177 -----------------IKAEAAENRKLPLDPDARSTLVAMADGDGRYLLT---LTETLL 216

Query: 234 EVAHAKTITREIADAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
            +     +        L +   A DK   +  +L                   +SA    
Sbjct: 217 AIGTDTPLNPTQLGQFLQKRRPAYDKNREEHYNL-------------------VSALHKS 257

Query: 292 PRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
            R +  D    ++ +       P    R L+ +A + +G   P
Sbjct: 258 VRGSDPDAALYWLARMLEGGEDPLFIARRLVRMASEDIGAADP 300


>gi|27229310|ref|NP_758835.1| ATPase WRNIP1 [Rattus norvegicus]
 gi|73920471|sp|Q8CG07|WRIP1_RAT RecName: Full=ATPase WRNIP1; AltName: Full=Werner
           helicase-interacting protein 1
 gi|25989624|gb|AAN15750.1| Werner syndrome-interacting protein-like protein [Rattus
           norvegicus]
 gi|68534260|gb|AAH98652.1| Werner helicase interacting protein 1 [Rattus norvegicus]
 gi|149045258|gb|EDL98344.1| Werner helicase interacting protein 1, isoform CRA_b [Rattus
           norvegicus]
          Length = 660

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 66/347 (19%), Positives = 125/347 (36%), Gaps = 37/347 (10%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLG 66
           R + +       +RP TL+++ GQ  A      L+  +E        +  ++  GPPG G
Sbjct: 214 RQMLEGKPLADKMRPDTLQDYIGQSRAVGQETLLRSLLE-----TNEIPSLILWGPPGCG 268

Query: 67  KTTLAQVVARELGVNFRST--SGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRL 117
           KTTLA ++A     +           AK  D+  ++   +        + +LFIDEIHR 
Sbjct: 269 KTTLAHIIANNSKKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRF 328

Query: 118 SIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
           +   ++   P +E   + L+    E PS +     LSR  +I            +  R  
Sbjct: 329 NKSQQDTFLPHVECGTITLIGATTENPSFQVNTALLSRCRVIVLEKLPVEAMVTILMRAI 388

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLA---VTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
             + ++  +       +   +  +      + D+A   +A  S G  R     L+     
Sbjct: 389 NSLGIHVLDSSRPTDPLSHSSNCSSEPSVFIEDKAVDTLAYLSDGDARTGLNGLQLAV-L 447

Query: 233 AEVAHAKTITRE-----IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISA 287
           A ++  K   ++          L+     K G  +  + Y      ++         ISA
Sbjct: 448 ARLSSRKMFCKKSGQTYSPSRVLITENDVKEGLQRSHILYDRAGEEHYNC-------ISA 500

Query: 288 GLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
                R + ++    ++ +       P    R L+  A + +G+  P
Sbjct: 501 LHKAMRGSDQNASLYWLARMLEGGEDPLYVARRLVRFASEDIGLADP 547


>gi|117928540|ref|YP_873091.1| recombination factor protein RarA [Acidothermus cellulolyticus 11B]
 gi|117649003|gb|ABK53105.1| Recombination protein MgsA [Acidothermus cellulolyticus 11B]
          Length = 500

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 82/335 (24%), Positives = 125/335 (37%), Gaps = 73/335 (21%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            +RPRT++EF GQ    +                  +L  GPPG GKTTLA +V+   G 
Sbjct: 38  RMRPRTIDEFVGQQHLLAPGTPLRRLLDDPQATAPSLLLWGPPGSGKTTLAYLVSHASGR 97

Query: 81  NFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
            F   S  V A   D+  ++              VLF+DE+HR S   ++ L PA+E+  
Sbjct: 98  RFVELSA-VAAGVKDVRDVIAAARRERAASGRGTVLFLDEVHRFSKAQQDSLLPAVENGI 156

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + L+    E PS   +   LSR  L+           PL D             ++L+T+
Sbjct: 157 VTLIGATTENPSFSVIGPLLSRAVLLTL--------QPLSD-------------DELRTV 195

Query: 192 VQRGA----KLTGLAVTDEAACEIAMR-SRGTPRIAGRLLRR-------VRDFAEVAHAK 239
           ++R       L G      AA E  +R + G  R A   L         V D AEV  A 
Sbjct: 196 IRRAVVDPRGLAGRHTLTPAAEERLIRLAGGDARRALTYLEAAAQPDQPVIDVAEVEGAA 255

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           +             + D+ G    D+   + + ++  G  V                 D 
Sbjct: 256 SR---------ALPSYDRQGDQHYDVA--SALIKSVRGSDV-----------------DA 287

Query: 300 IEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
              Y+ +       PR   R L+ +A + +G+  P
Sbjct: 288 ALHYLARMLEAGEDPRFIARRLVILASEDIGLADP 322


>gi|54025615|ref|YP_119857.1| recombination factor protein RarA [Nocardia farcinica IFM 10152]
 gi|54017123|dbj|BAD58493.1| putative AAA ATPase [Nocardia farcinica IFM 10152]
          Length = 451

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 84/342 (24%), Positives = 127/342 (37%), Gaps = 51/342 (14%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           +D  G+  R    +      +RPR+LEE  GQ              +    A   VL  G
Sbjct: 18  IDGAGVDFRGPGDQAPLAVRMRPRSLEEVVGQQHLLGPGSPLRRLIEGSGAA--SVLLFG 75

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHR 116
           PPG GKTTLA ++++  G  F + S        +    DLA       +R VLFIDE+HR
Sbjct: 76  PPGTGKTTLASLISQATGRRFEALSALSAGVKEVRAVIDLARRRLTAGERTVLFIDEVHR 135

Query: 117 LSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRF 174
            S   ++ L  A+E+  + L+    E PS   V   LSR  ++   +        + DR 
Sbjct: 136 FSKTQQDALLAAVENRIVLLVGATTENPSFSVVSPLLSRSLVLQLRSLTDADIRTVLDR- 194

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
                              RG       VTD A   I   + G  R A   L      AE
Sbjct: 195 --------------ALADPRGFGG-AYQVTDAALDHIVRIAGGDARRALTALEA---SAE 236

Query: 235 VAHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEP 292
            +    +  ++ +A++ R A   D+ G    D+                   +SA +   
Sbjct: 237 SSLDGVVDLDLVEASVDRAAVRYDRAGDQHYDV-------------------VSAFIKSI 277

Query: 293 RDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           R +  D    Y+ +       PR   R L+  A + +G+  P
Sbjct: 278 RGSDVDAALHYLARMLSAGEDPRFIARRLVISASEDIGMADP 319


>gi|253582254|ref|ZP_04859477.1| recombination factor protein RarA [Fusobacterium varium ATCC 27725]
 gi|251835793|gb|EES64331.1| recombination factor protein RarA [Fusobacterium varium ATCC 27725]
          Length = 409

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 71/341 (20%), Positives = 128/341 (37%), Gaps = 60/341 (17%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            L   N  +       LRP +L +F GQ +      V  +  + ++  + + +F GPPG 
Sbjct: 2   NLFESNYDKIKPLALRLRPTSLNDFIGQEKILGKGGVLRKLIEKQS--ISNSIFFGPPGC 59

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLS 118
           GK++L +++++ L  NF + +  V A   DL  ++   +        + +LF+DEIHR +
Sbjct: 60  GKSSLGEIISKTLDSNFETLNATV-ASLNDLREIVEKAKKNLEFYGKKTILFLDEIHRFN 118

Query: 119 IIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
            + ++ L    E   L L+    E P        LSR                      +
Sbjct: 119 KLQQDALLSYCESGILTLIGATTENPYYSLNNALLSRV---------------------M 157

Query: 177 PIRLNFYEIEDLKTIVQRGAKL--TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
                    E+++ I++RGAK       ++ E    I   S+G  RIA   L   ++   
Sbjct: 158 IFEFKPLSRENIRHILERGAKYIGLEEKISKEIIECILDISQGDSRIAINYLELYQNSC- 216

Query: 235 VAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRD 294
               +    E+ +    R +      D+ +L                   ISA +   R 
Sbjct: 217 ---MELEDEEVLEIFRQRKSSYHKAEDKYNL-------------------ISALIKSMRG 254

Query: 295 AIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +  D    ++ +       PR   R +M  A + +G+  P 
Sbjct: 255 SDPDAALYWLGRLLHGGEDPRYIARRIMIHASEDIGMANPE 295


>gi|299143961|ref|ZP_07037041.1| ATPase, AAA family [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298518446|gb|EFI42185.1| ATPase, AAA family [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 434

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 76/351 (21%), Positives = 120/351 (34%), Gaps = 62/351 (17%)

Query: 2   MDREGL-LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD   L +  N+         LRP+ L EF GQ       +      K  ++ +  ++F 
Sbjct: 1   MDLFTLNMQENLKTNAPLAERLRPKNLNEFFGQKHLVGEGRYLSRIIK--SDRVSSMIFY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDE 113
           GPPG+GKTTLA+++A      F   S  V +   +L  +L   E+         +LFIDE
Sbjct: 59  GPPGVGKTTLARIIANTTKKRFVQISA-VTSNIKELREVLNEAEEFLKYENKNTILFIDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGL-----L 166
           IHR +   ++ L P +E   + L+    E P     K  +SR  ++             +
Sbjct: 118 IHRFNKTQQDALLPFVEKGIIILIGATTENPYFEVNKALVSRCQILTLEALCQEELRELI 177

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPR-IAGRL 225
              L D  G                         + + D A   +   S G  R I   L
Sbjct: 178 IKALNDENGF--------------------GNLNIEIDDAAINFLINNSSGDGRNILNSL 217

Query: 226 LRRVRDFAEVAHAKTITREIADAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIE 283
              +     V +   I  +I    L       DK G +  D                   
Sbjct: 218 EIAILSTDMVDNKIKIDIDIIKDCLQSKNINYDKNGNEHYD------------------- 258

Query: 284 TISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           T SA +   R +  +    Y+ +       P+   R L+  A + +    P
Sbjct: 259 TASAFIKSIRGSDPNAALFYLAKMIESGEEPKFIARRLIISASEDISNADP 309


>gi|255534679|ref|YP_003095050.1| ATPase, AAA family [Flavobacteriaceae bacterium 3519-10]
 gi|255340875|gb|ACU06988.1| ATPase, AAA family [Flavobacteriaceae bacterium 3519-10]
          Length = 442

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 65/330 (19%), Positives = 118/330 (35%), Gaps = 52/330 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+TL+E  GQ           +  +   + L+ ++F GPPG GKTT+A++++ 
Sbjct: 23  PLAEQMRPKTLDEVRGQEHLTGEKGTVRKMLE--NDTLNSLIFWGPPGTGKTTIAEIISE 80

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAM 129
           + G  F   S  V +   D+  ++   + +        +LFIDEIHR +   ++ L  A+
Sbjct: 81  QSGRKFFKLSA-VSSGVKDVREVIEEAKKQNLFSGKSPILFIDEIHRFNKSQQDSLLHAV 139

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E   + L+    E PS   V   LSR  +    +        L +     + L  Y    
Sbjct: 140 EKGWIVLIGATTENPSFEVVSALLSRSQVYVLKSLSYEKLEELAE-----LSLKNYNASH 194

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
                       G     +        S G  R     +  V +  + +  K I+     
Sbjct: 195 ------------GTEFRIKDKEAFIQYSGGDARKLINSVENVLNNFKNSDKKEISNADVL 242

Query: 248 AALL--RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
             L       DK G    D+                   ISA +   R +  +    ++ 
Sbjct: 243 EVLQETMALYDKNGEQHYDI-------------------ISAFIKSMRGSDPNGAVYWLA 283

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +        +   R ++ +A + +G+  P+
Sbjct: 284 RMLVGGEDVKFIARRMLILAAEDIGLANPN 313


>gi|297620403|ref|YP_003708540.1| recombination factor RarA [Waddlia chondrophila WSU 86-1044]
 gi|297375704|gb|ADI37534.1| recombination factor RarA [Waddlia chondrophila WSU 86-1044]
          Length = 418

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 75/330 (22%), Positives = 132/330 (40%), Gaps = 59/330 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP+ LEE  GQ     +   FI +A    + L  ++  GPPG GKT++A++ A+
Sbjct: 3   PLADKLRPKKLEEIWGQDHLLGDG-AFIPSAIRSQKPL-SMILWGPPGCGKTSIARLYAQ 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAME 130
              ++FRS +  + +   DL  ++  ++         VLF+DEIHR +   ++   P +E
Sbjct: 61  AFAMDFRSLNA-IFSGVADLKKIVHEVKQTPLFSQNCVLFVDEIHRFNKAQQDAFLPFIE 119

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           D  + L+    E PS       LSR  ++                          + E L
Sbjct: 120 DGTIVLIGATAENPSFYLNDALLSRLRVLQLKA---------------------LDHEAL 158

Query: 189 KTIVQR-GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           ++I++R    +  L +T+E    +   S+G  R    L+  V  F+     + +  E+  
Sbjct: 159 ESILERCEEAIGPLKITEEGRKFLLDLSQGDGRYLLNLVENVSVFSS---DQLLNVEMLR 215

Query: 248 AALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           + L + A   D+      +L                   ISA     R +  D    ++ 
Sbjct: 216 SRLQKRAPLFDRGSDQHYNL-------------------ISALHKSVRGSDPDAALYWLG 256

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +       PR  GR L+ +A + +G+  P 
Sbjct: 257 RMLEGGEDPRFIGRRLVRMATEDIGLADPQ 286


>gi|114800296|ref|YP_761330.1| recombination factor protein RarA [Hyphomonas neptunium ATCC 15444]
 gi|114740470|gb|ABI78595.1| ATPase, AAA family [Hyphomonas neptunium ATCC 15444]
          Length = 436

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 72/346 (20%), Positives = 120/346 (34%), Gaps = 59/346 (17%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D                  LRP+ L +  GQ             A  R   L  ++  
Sbjct: 1   MSDLFSAAGLEDDAPRPLADRLRPKKLSDVVGQGHLIGPDGPI--GAMLRNGRLVSMILW 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEI 114
           GPPG+GKTT+A+++A+E  + F + S  + +   DL A     E R       +LF+DEI
Sbjct: 59  GPPGVGKTTIARLLAQETDLEFEALSA-IFSGVKDLRAAFEKAEARRRVGKGTLLFVDEI 117

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++   P +E   + L+    E PS       LSR  ++               
Sbjct: 118 HRFNRSQQDGFLPFVESGTVTLVGATTENPSFELNGALLSRCQVMVLRR----------- 166

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLT--GLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
                      E +DL+ ++ R  +     L    +A   +   + G  R    L+ +  
Sbjct: 167 ----------LEDDDLRELMARAERAMGRRLPAMPDAREALIRMADGDGRYLLNLVEQA- 215

Query: 231 DFAEVAHAKTITREIADAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAG 288
            +A       ++ E     L +   A DK   +  +L                   ISA 
Sbjct: 216 -YAMRGEPGLLSLEEIATGLQKRAAAYDKDREEHYNL-------------------ISAL 255

Query: 289 LSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
               R +  D    +  +       P    R L+ +A + +G+  P
Sbjct: 256 HKSVRGSDPDAALYWFARMLEGGEDPLFIARRLIRMASEDIGLADP 301


>gi|258546040|ref|ZP_05706274.1| replication-associated recombination protein A [Cardiobacterium
           hominis ATCC 15826]
 gi|258518697|gb|EEV87556.1| replication-associated recombination protein A [Cardiobacterium
           hominis ATCC 15826]
          Length = 457

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 76/343 (22%), Positives = 121/343 (35%), Gaps = 56/343 (16%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M  +  L +RN     AD   LRP+TL ++ GQ     +      A     +    +L  
Sbjct: 18  MSGQPLLFTRNGDAPLAD--RLRPKTLADYIGQRHILGDGMPL--AVAIAQKKPFSMLLW 73

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEI 114
           GPPG GKTTLA ++A      +   S  V +   ++   +   +       + +LFIDEI
Sbjct: 74  GPPGCGKTTLALLLADAFDARYIRLSA-VFSGVKEVREAVAQAQQERAIGRKTILFIDEI 132

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++   P +ED  L L+    E P+       LSR                   
Sbjct: 133 HRFNKAQQDAFLPYVEDGTLILIGATTENPAFNLNNALLSRLR----------------- 175

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
                  L     ++L   ++RG    GL   + A   +A ++ G  R A   L      
Sbjct: 176 ----VFHLKPLSEDELAEKLRRGLAALGLEADEPAIATLAYQAGGDARKAIGWLE----- 226

Query: 233 AEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEP 292
            E A  +    + A A    LA      D+               G    E +SA     
Sbjct: 227 -EWALLRRQGIDSAAALAQALADQPKALDKQ--------------GDWFYELLSAFHKSL 271

Query: 293 RDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           R +  D    +  +       P    R ++ +A + +G   P+
Sbjct: 272 RGSSPDGAMYWFARMIDGGADPLTIARRMLCVASEDIGNADPN 314


>gi|310823298|ref|YP_003955656.1| ATPase [Stigmatella aurantiaca DW4/3-1]
 gi|309396370|gb|ADO73829.1| AAA ATPase [Stigmatella aurantiaca DW4/3-1]
          Length = 443

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 80/351 (22%), Positives = 129/351 (36%), Gaps = 66/351 (18%)

Query: 2   MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD      +   +  A +   +RP TL +F GQ       +      +   + +  ++  
Sbjct: 1   MDLFEHAGQKDQEAQAPLAERMRPSTLADFAGQEHLTGEGRFLRRVIEQ--DQVPSLILW 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDE 113
           GPPG GKTTLA+V+A+  G +F S S  V++   D+   +   +        R +LFIDE
Sbjct: 59  GPPGTGKTTLARVIAQATGASFESLSA-VLSGVKDIRETVARAQERWRLHRQRTLLFIDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++ L P +E   + L+    E PS       LSR  ++              
Sbjct: 118 IHRFNKSQQDALLPHVEKGTVTLIGATTENPSFEVNAALLSRARVVTL------------ 165

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKL-----TGLAVTDEAACEIAMRSRGTPRIAGRLL 226
                       E E+L  +++R           + V DEA   IA  + G  R A   L
Sbjct: 166 ---------RGLEEEELVGVLRRAVVAPKGLGGKVQVDDEALQFIAQAAGGDARKALTAL 216

Query: 227 RRVRDFAEVAHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIET 284
                 A       + R+ A+ AL + A   DK G +                       
Sbjct: 217 E----VAASYGGSQVNRQAAEEALQQKALLYDKGGEEHY-------------------NV 253

Query: 285 ISAGLSEPRDAIEDLIEPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
           +SA +   R +  D    +M +       P    R ++  A + +G   P 
Sbjct: 254 VSAFIKSMRGSDVDAALYWMARMLEAGEDPVFLFRRMVIFASEDIGNADPR 304


>gi|258645316|ref|ZP_05732785.1| ATPase, AAA family [Dialister invisus DSM 15470]
 gi|260402665|gb|EEW96212.1| ATPase, AAA family [Dialister invisus DSM 15470]
          Length = 474

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 68/343 (19%), Positives = 118/343 (34%), Gaps = 47/343 (13%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M+    +S   +        +RP  L++  GQ E+        +  +   + +  +L  G
Sbjct: 41  MESLFDISDESNAYAPLADRMRPEILDDIIGQDESVGKNSFLYKMIER--DTVPSLLLFG 98

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAAL-------LTNLEDRDVLFIDEI 114
           PPG GKTT+A V+A+     F   +    + A ++  +       L     R ++FIDE+
Sbjct: 99  PPGCGKTTIASVIAKMTKFKFLKLNA-TSSGAKEIRDIVPAAQKELQYYGRRTIVFIDEV 157

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   +++L P +E+    L+    E P        LSR  LI           PL  
Sbjct: 158 HRFNRAQQDLLLPYVENGTFILIGATTENPYFELNGSLLSRIRLIHL--------KPLSI 209

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
              + I       ++      +G  +      +     IA  + G  RIA  LL +    
Sbjct: 210 DSIVLILQKALTDKN------KGLGMHDYHADEIVLKNIAAYAAGDTRIALNLLEQATTS 263

Query: 233 AEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEP 292
                  T       A       DK G    D+                    SA +   
Sbjct: 264 LPYGGVLTEKEVQGVAGEQMSVYDKKGDYHYDIA-------------------SAFIKSM 304

Query: 293 RDAIEDLIEPYMIQQ-GFIQRTP-RGRLLMPIAWQHLGIDIPH 333
           R +       Y+ +     ++T    R ++  A + +G+  P 
Sbjct: 305 RGSDPQAALHYLARMIAGGEKTSFISRRIIICAAEDVGLADPD 347


>gi|295396913|ref|ZP_06807037.1| AAA family ATPase [Aerococcus viridans ATCC 11563]
 gi|294974847|gb|EFG50550.1| AAA family ATPase [Aerococcus viridans ATCC 11563]
          Length = 423

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 74/328 (22%), Positives = 123/328 (37%), Gaps = 39/328 (11%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           + Q +     +RPR++EE  GQ       K+     KA    L  ++  GPPG+GKT++A
Sbjct: 1   MPQNNPLAFRMRPRSIEEVVGQQHLVGEGKIIFRMVKAMQ--LSSMILYGPPGIGKTSIA 58

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAM 129
             +A      FR  +    +K  DL A++   +     VL +DEIHRL    ++ L P +
Sbjct: 59  SAIAGSTKYAFRKLNAATDSK-KDLQAVVEEAKFSGGIVLLLDEIHRLDKTKQDFLLPHL 117

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E   + L+    E P   +     SR  +            PL D   I I      +E 
Sbjct: 118 ESGLITLIGATTENPFINTSPAIRSRAQIFQL--------EPL-DEADIKIG-----LER 163

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT--ITREI 245
             T   RG     + +   A    A  + G  R A   L       +        IT +I
Sbjct: 164 ALTDSDRGLGSFPVDIDANAIDHFAHAAFGDLRSALNALELSVKSTDENADGRIHITLDI 223

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           A+ ++   +        +    ++   ++  G  V    + A                +I
Sbjct: 224 AEESMQMKSFSHDADGDMHYDVISAFQKSIRGSDVDAALLYAA--------------RLI 269

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           + G  + T   R L+ IA++ +G+  P 
Sbjct: 270 EAG--ELTILCRRLLVIAYEDIGLANPQ 295


>gi|117924970|ref|YP_865587.1| recombination factor protein RarA [Magnetococcus sp. MC-1]
 gi|117608726|gb|ABK44181.1| Recombination protein MgsA [Magnetococcus sp. MC-1]
          Length = 447

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 80/332 (24%), Positives = 129/332 (38%), Gaps = 51/332 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RPR L E  GQ E     ++  EA  +    +  ++  GPPG GKTT+A+++A 
Sbjct: 13  PLAERMRPRDLAELVGQEELADEGRILHEALCSGH--IPSMILWGPPGCGKTTIARMIAT 70

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFIDEIHRLSIIVEEILYPAME 130
           ++ + F S S  V+A   ++  ++        L    +LF+DEIHR +   ++   P +E
Sbjct: 71  QVTLRFESLSA-VLAGVKEVRLVVDRAREARVLGQGTILFVDEIHRFNKAQQDAFLPYVE 129

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
              + L+    E PS       LSR  ++           PL +   + +       +  
Sbjct: 130 SGDIILIGATTENPSFELNGALLSRCRVVEL--------KPLHEAALVTLLQRALVDQ-- 179

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE---VAHAKTITREI 245
               +RG +   LAV  EA   +A  + G  R A  LL    + A    VA    +T E 
Sbjct: 180 ----ERGLERYKLAVEPEALQHMAQLAAGDGRYALNLLETFVELAAKSGVARGSQLTLER 235

Query: 246 ADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
              +L R A   DK G    +L                   ISA     R +  D    +
Sbjct: 236 LKNSLQRRAALYDKAGDGHYNL-------------------ISALHKSLRGSDVDAALYW 276

Query: 304 MIQQ--GFIQRTPRGRLLMPIAWQHLGIDIPH 333
           + +   G  +     R L+  A + +G   P 
Sbjct: 277 LARMLEGGEEGLYIARRLVRFATEDVGNADPR 308


>gi|330794089|ref|XP_003285113.1| hypothetical protein DICPUDRAFT_148953 [Dictyostelium purpureum]
 gi|325084939|gb|EGC38356.1| hypothetical protein DICPUDRAFT_148953 [Dictyostelium purpureum]
          Length = 743

 Score =  142 bits (359), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 72/326 (22%), Positives = 123/326 (37%), Gaps = 32/326 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
               ++RP    +F GQ E   N  +       ++E+   ++  GPPG GKTTLA+++ +
Sbjct: 259 PLAEIMRPTEFLDFIGQEELMHNSIIL---NLFKSESPPSIILYGPPGCGKTTLAKIITK 315

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAME 130
           +   N+   S  V +   D+   +   +       + +LFIDEIHR +   +++L PA+E
Sbjct: 316 KSNANYLELSA-VGSGVKDVKEAIDKAKNSLMFGKKTILFIDEIHRYNKSQQDVLLPAIE 374

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
              + L+    E PS       LSR  +             L  +  I I     E+  L
Sbjct: 375 SGTIILIGATTENPSFEINNALLSRCKVFRL--------EKLLKKDIIEIIKRTIEMTPL 426

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
                   +   L + D     +A  S G  R+A  +L       +   +     EI   
Sbjct: 427 IH------ENLTLDLEDGTIETLAEISEGDARVAINVLEMAIKAFKNNLSYEEELEIKKK 480

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY---MI 305
            L +         QL +        N   G    E ISA     R +  +    +   M+
Sbjct: 481 GLKKNIQVSRK--QLGVLLQRTSLINDKHGDSFYELISALHKAVRGSDPNATAYWCVRML 538

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDI 331
           + GF       R ++ +A + +G+  
Sbjct: 539 ESGF-NPIYIARRMIRMASEDIGLSD 563


>gi|325105535|ref|YP_004275189.1| AAA ATPase central domain protein [Pedobacter saltans DSM 12145]
 gi|324974383|gb|ADY53367.1| AAA ATPase central domain protein [Pedobacter saltans DSM 12145]
          Length = 426

 Score =  142 bits (359), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 70/330 (21%), Positives = 121/330 (36%), Gaps = 51/330 (15%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +     +RP+ L+E+TGQ        V  +A       +  ++F GPPG+GKTTL+ ++A
Sbjct: 5   EPLAERMRPKNLDEYTGQKHLVGPGAVLRKAIDKGN--IPSMIFWGPPGVGKTTLSFIIA 62

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPA 128
           +     F S S  + +   D+  ++   +          VLFIDEIHR S   ++ L  A
Sbjct: 63  QSQDRPFFSLSA-INSGVKDVRDVIDKAKMYKKAGHPIPVLFIDEIHRFSKSQQDSLLGA 121

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           +E   + L+    E PS   +   LSR  +             L +R  I          
Sbjct: 122 VERGYVTLIGATTENPSFEVISALLSRCQVYILENLSEEDLLGLLNRAMI---------- 171

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
            L  I+Q         +T +    +   S G  R    +   + + A     +     + 
Sbjct: 172 -LDPILQ------EKEITLKETEALLRLSGGDGRKLLNIFELLVNAAPTDKVEITNEFVL 224

Query: 247 DAALLRLA-IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
                ++A  DK G    D+                   ISA +   R +  +    ++ 
Sbjct: 225 ANVQQQMALYDKAGEQHYDI-------------------ISAFIKSIRGSDPNAAVYWLA 265

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +       P    R L+ +A + +G   P+
Sbjct: 266 RMIEGGEDPSFIARRLLILASEDIGNANPN 295


>gi|78186607|ref|YP_374650.1| recombination factor protein RarA [Chlorobium luteolum DSM 273]
 gi|78166509|gb|ABB23607.1| Recombination protein MgsA [Chlorobium luteolum DSM 273]
          Length = 457

 Score =  142 bits (359), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 73/326 (22%), Positives = 116/326 (35%), Gaps = 46/326 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP++++E  GQ      +             L  ++F GPPG GKTTLA++ A 
Sbjct: 26  PLAERVRPQSIDEMAGQEHLVGPMGPLRR--FLGGGQLPSMIFWGPPGSGKTTLAEICAS 83

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAME 130
            L   F   S  + +   D+  +L N         R +LFIDEIHR +   ++ L  A+E
Sbjct: 84  ALDFRFEQLSA-IESGVKDVRRVLENAASSRARGIRTLLFIDEIHRFNKSQQDTLLHAIE 142

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
              + L+    E PS       LSR  +    +                        ED+
Sbjct: 143 QGVVVLIGATTENPSFEINAALLSRMQVYTLKS---------------------LGPEDI 181

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           + +V R   +  L        E         R +G   R+  +  E A    +  E  D 
Sbjct: 182 RLVVTRALSVDPLFRDRHVQVED---MEFLLRFSGGDARKALNALEAAF--LLIAEDEDP 236

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL+   + +         Y         GG     T+SA +   R +  D    ++ +  
Sbjct: 237 ALIGRDLLERALQHRAPIY-------DHGGEAHYNTVSAFIKSMRGSDPDAALFWLARMI 289

Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIP 332
                PR   R L+  A + +G   P
Sbjct: 290 EGGEDPRFIARRLVIFASEDIGNADP 315


>gi|224282759|ref|ZP_03646081.1| recombination factor protein RarA [Bifidobacterium bifidum NCIMB
           41171]
 gi|313139919|ref|ZP_07802112.1| recombination factor protein RarA [Bifidobacterium bifidum NCIMB
           41171]
 gi|313132429|gb|EFR50046.1| recombination factor protein RarA [Bifidobacterium bifidum NCIMB
           41171]
          Length = 468

 Score =  142 bits (359), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 86/359 (23%), Positives = 131/359 (36%), Gaps = 63/359 (17%)

Query: 2   MDREGLLSRNVSQED---ADISLLRPRTLEEFTGQVEACSNLKVFIE----AAKARAEAL 54
           M    L       +D        +RPRT++E  GQ                ++K    A 
Sbjct: 1   MTENDLFGAADVPDDMTRPLAVRMRPRTVDEVLGQSHVLGEGSPLRRLANPSSKGSLTAP 60

Query: 55  DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------D 107
             ++  GPPG+GKTTLA +VAR+ G  F   S  V +   D+  +L     R        
Sbjct: 61  SSIIMFGPPGVGKTTLATIVARQSGRAFEELSA-VTSGVKDVRDVLALARRRLVGDGTET 119

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGL 165
           VLF+DE+HR S   ++ L PA+E+  +  +    E PS   +K  LSR  ++   +    
Sbjct: 120 VLFVDEVHRFSKSQQDALLPAVENRDVTFIGATTENPSFSVIKPLLSRSVVVKLESLEPS 179

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
               L  R                   +RG     + + D A  EI   + G  R    +
Sbjct: 180 DLVTLIARAVED---------------KRGLNG-EVKIDDAAVNEIVRMAGGDARKTLTI 223

Query: 226 LRRVR-----DFAEVAHAK--TITREIADAALLR--LAIDKMGFDQLDLRYLTMIARNFG 276
           L         D A    A+  TIT ++    +    +  DK G D  D+           
Sbjct: 224 LEAAAGAVTGDKARRKGARRPTITPDVVSQVMDAATVRYDKDGDDHYDV----------- 272

Query: 277 GGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                   ISA +   R +  D    Y+ +       PR   R +M  A + +G+  P 
Sbjct: 273 --------ISAFIKSMRGSDPDAAIHYLARMLRAGEDPRFIARRIMIAASEEVGMAAPQ 323


>gi|66823793|ref|XP_645251.1| hypothetical protein DDB_G0272158 [Dictyostelium discoideum AX4]
 gi|75009093|sp|Q75JU2|WRIP1_DICDI RecName: Full=ATPase WRNIP1; AltName: Full=Werner
           helicase-interacting protein 1 homolog
 gi|60473285|gb|EAL71231.1| hypothetical protein DDB_G0272158 [Dictyostelium discoideum AX4]
          Length = 876

 Score =  142 bits (359), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 69/331 (20%), Positives = 123/331 (37%), Gaps = 40/331 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP  L +F GQ          ++      E L   +  GPPG GKTTLAQ+VA 
Sbjct: 196 PLSEQMRPTELSDFIGQESLL-VGDPIVKKLFQSPE-LPSFILYGPPGCGKTTLAQIVAS 253

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAME 130
           +   N  + S  V +   D+  ++           + +LFIDEIHR + + +++L PA+E
Sbjct: 254 KSNYNINALSA-VGSGVKDIKEVIDKARNTLQFGKKTILFIDEIHRYNKLQQDVLLPAIE 312

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
              + L+    E PS       LSR                         ++     E+L
Sbjct: 313 SGIIILIGATTENPSFELNGALLSRCK---------------------VFKMEKLTKENL 351

Query: 189 KTIVQRGAKL------TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           +T+++R  ++        L + ++A   +A  + G  R+A  +L       +        
Sbjct: 352 ETLIKRTLEVTPLLMDRRLIMDEDAIKSLAEIADGDARVAINVLDMAIKANKEEQTYKER 411

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            E   +    +    +   Q+             GG    E ISA     R +  +    
Sbjct: 412 MEEKHSTSGIVRDIVLTKKQMGSLLQRTSLIYDKGGDAFYELISALHKSVRGSDANATAY 471

Query: 303 YMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
           ++I+       P    R ++ +A + +G+  
Sbjct: 472 WVIRMLESGCEPLYIVRRMVRMASEDIGLAD 502


>gi|229495215|ref|ZP_04388950.1| ATPase, AAA family [Porphyromonas endodontalis ATCC 35406]
 gi|229317658|gb|EEN83556.1| ATPase, AAA family [Porphyromonas endodontalis ATCC 35406]
          Length = 458

 Score =  142 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 83/345 (24%), Positives = 134/345 (38%), Gaps = 62/345 (17%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPG 64
           + R  +        +RP TLEE+ GQ       + L   I + K     +  ++  GPPG
Sbjct: 19  MDRPNNPYQPLAERMRPTTLEEYVGQRHIVAETAPLGRMIRSGK-----VPSLILWGPPG 73

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED----------RDVLFIDEI 114
           +GKTTLA+++A+ +   F   S  V +  GD+  +L   E           R +LFIDEI
Sbjct: 74  VGKTTLAELIAQSVEAPFYKLSA-VGSGVGDVRRVLEEAERSTQGFFAAKSRPLLFIDEI 132

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR S   ++ L  A+E   + L+    E PS   ++  LSR  +    +        L +
Sbjct: 133 HRFSKSQQDSLLAAVERGIVTLIGATTENPSFEVIRPLLSRCQVFVLQSLEPEDLRQLLE 192

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R    I  + Y       +V R  K+            +   + G  R    LL  +   
Sbjct: 193 R---AISTDIY-------LVPRKVKIESDKQ-------LLAYAGGDARKLLNLLEILAG- 234

Query: 233 AEVAHAKTITREIADAALLR--LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
           A  A    IT E+   +++R  +A DK G    D+                    SA + 
Sbjct: 235 ATSATPLVITDELVRGSMMRQPMAFDKGGEMHYDIA-------------------SAFIK 275

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
             R +  D    +M +       PR   R ++  A + +G+  P+
Sbjct: 276 SIRGSDPDAALYWMARLIEGGENPRFVARRIVISAAEDIGLANPN 320


>gi|85715102|ref|ZP_01046086.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [Nitrobacter sp. Nb-311A]
 gi|85698017|gb|EAQ35890.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [Nitrobacter sp. Nb-311A]
          Length = 443

 Score =  142 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 76/345 (22%), Positives = 119/345 (34%), Gaps = 56/345 (16%)

Query: 3   DREGLLSRNVSQEDADIS---LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           D   L +    + DA       LRP+TL +  GQ              + R+  L  ++F
Sbjct: 8   DSGSLFAAAGLERDAPHPLPDRLRPQTLPDVVGQDHILGPDGALTRMLETRS--LGSLIF 65

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEI 114
            GPPG GKTT+A+++A    ++F   S        + K  D A          +LF+DE+
Sbjct: 66  WGPPGTGKTTVARLLADATALHFEQLSAVFSGVADLKKVFDAARARRESGTGTLLFVDEV 125

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++   P MED  + L+    E PS       LSR  ++   +        L  
Sbjct: 126 HRFNRAQQDSFLPVMEDGTVVLVGATTENPSFELNAALLSRARVLVFRSLDAAAIEKLFV 185

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R  +                        L + +EA   +A  + G  R A  L+  V   
Sbjct: 186 RAELVEGK-------------------PLPLDEEARAALARMADGDGRAALTLVEEVWRS 226

Query: 233 AEVAHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
           A     +        + L R A   DK      +L                   ISA   
Sbjct: 227 A--REGEAFNAGQLQSVLQRRAPIYDKSADGHYNL-------------------ISALHK 265

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
             R +  D    Y+ +       P    R +M +A + +G+  P 
Sbjct: 266 SVRGSDPDAALYYLARMLEAGEDPLFLARRVMRMAVEDIGLADPQ 310


>gi|221215313|ref|ZP_03588278.1| ATPase, AAA family [Burkholderia multivorans CGD1]
 gi|221164745|gb|EED97226.1| ATPase, AAA family [Burkholderia multivorans CGD1]
          Length = 437

 Score =  142 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 74/334 (22%), Positives = 118/334 (35%), Gaps = 53/334 (15%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
               +     LLRP+TL+EF GQ       K    A +A    L   +  GPPG+GKTTL
Sbjct: 6   TTKPKPPLAELLRPKTLDEFVGQRHLLGPGKPLRLAFEA--GKLHSFILWGPPGVGKTTL 63

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLA-------ALLTNLEDRDVLFIDEIHRLSIIVEE 123
            ++ A      F + S  V+A   D+        A L N     VLF+DEIHR +   ++
Sbjct: 64  GRLAASATDSRFIAISA-VLAGVKDIRQAIDEAQAELDNHGRSTVLFVDEIHRFNKAQQD 122

Query: 124 ILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
            L P +E   L L+    E P        LSR  +                         
Sbjct: 123 ALLPHVESGLLTLVGGTTEHPGLAVNSALLSRAQVYTL---------------------E 161

Query: 182 FYEIEDLKTIVQRGAKLTG-LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
               ++L  + +R       + +  +A   +   + G  R    LL +V + A  A    
Sbjct: 162 PLSSDELNQLYERALPHLQGVKLDADALDLLKGFADGDGRRFLNLLEQVTNAASGAGKTV 221

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +  E A+ +                     + R   GG      +SA     R +  D  
Sbjct: 222 VDGEFANLSTS-----------------PSLRRFDKGGDEFYWQLSAFHKSLRGSDPDAA 264

Query: 301 EPYMIQQ--GFIQRTPRGRLLMPIAWQHLGIDIP 332
             ++ +   G    +   R ++ +A + +G   P
Sbjct: 265 LYWLARILDGSGDVSQVTRRMVVMASEDIGNADP 298


>gi|147902451|ref|NP_001089187.1| Werner helicase interacting protein 1 [Xenopus laevis]
 gi|63147358|dbj|BAD98297.1| Werner helicase interacting protein 1 [Xenopus laevis]
          Length = 572

 Score =  142 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 61/350 (17%), Positives = 118/350 (33%), Gaps = 66/350 (18%)

Query: 17  ADISLLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
                +RP TL  + GQ +       L+  ++A       +  ++  GPPG GKTTLA +
Sbjct: 149 PLADKMRPTTLNNYMGQNKVLGENTMLRNLLQA-----NDIPSIILWGPPGCGKTTLAHI 203

Query: 74  VARELGVNFRST--SGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEI 124
           +A+    +           A   D+   +   +        + +LF+DEIHR + + ++ 
Sbjct: 204 IAKNAQKSSSRFVTLSATSASTSDVREFIKQAQNEQRLFKRKTILFVDEIHRFNKMQQDT 263

Query: 125 LYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             P +E   + L+    E PS +     LSR  +I                         
Sbjct: 264 FLPHVECGTITLIGATTENPSFQVNTALLSRCRVIVL---------------------EK 302

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
             +E ++TI+ R     GL V  +    +   S  +        + +   A +      T
Sbjct: 303 LSVEAMETILMRAVDSLGLKVLKDGEQLVGSSSDVSETSVYVEEKALTTLAHLCDGDART 362

Query: 243 ----------------REIADAALL-RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETI 285
                           ++     ++ +    K G  +  + Y      ++         I
Sbjct: 363 GLNGLQLSVQASLAAEKDPIKQGIVIKEEHIKEGLQRSHILYDRAGEEHYNC-------I 415

Query: 286 SAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           SA     R + ++    ++ +       P    R L+  A + +G+  P 
Sbjct: 416 SALHKSMRGSDKNASLYWLGRMLEGGEDPLYVARRLVRFASEDIGLADPQ 465


>gi|149277254|ref|ZP_01883396.1| ATPase, AAA family protein [Pedobacter sp. BAL39]
 gi|149232131|gb|EDM37508.1| ATPase, AAA family protein [Pedobacter sp. BAL39]
          Length = 426

 Score =  142 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 73/328 (22%), Positives = 124/328 (37%), Gaps = 49/328 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP++L+E+ GQ        V  +A +++   L  ++F GPPG+GKTTLA ++++
Sbjct: 6   PLAERMRPQSLDEYVGQQHIVGPDAVLRKALQSKQ--LPSMIFWGPPGVGKTTLAYIISQ 63

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLT-NLEDRDVLFIDEIHRLSIIVEEILYPAME 130
            L   F + S        I    D AALL  +L    +LFIDEIHR S   ++ L  A+E
Sbjct: 64  TLDRPFFNLSAINSGVKDIRDVIDRAALLKDSLMGLPILFIDEIHRFSKSQQDSLLGAVE 123

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
              + L+    E PS   +   LSR  +           + L                 L
Sbjct: 124 RGLVTLIGATTENPSFEVISALLSRCQVYILKALDEGELSGL-----------------L 166

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +T +++   L    +T +    +   S G  R    +L    +           + + + 
Sbjct: 167 QTAIKKDVVLKTKKITIKEHEALIRLSGGDGRKLLNVLEIAINGIGGDKIVLTNKNVLEH 226

Query: 249 ALL-RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           A       DK G    D+                   ISA +   R +  +    ++ + 
Sbjct: 227 AQQNLALYDKAGEQHYDI-------------------ISAFIKSIRGSDPNAAVYWLARM 267

Query: 308 GFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                 P    R L+ +A + +G   P+
Sbjct: 268 IEGGEDPLFIARRLLILASEDIGNANPN 295


>gi|301789397|ref|XP_002930115.1| PREDICTED: LOW QUALITY PROTEIN: ATPase WRNIP1-like [Ailuropoda
           melanoleuca]
          Length = 618

 Score =  142 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 71/349 (20%), Positives = 127/349 (36%), Gaps = 41/349 (11%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLG 66
           R + +       +RP TL+++ GQ  A      L+  +E        +  ++  GPPG G
Sbjct: 172 RQMLEGKPLADKMRPDTLQDYIGQSRAVGQETLLRSLLE-----TNEIPSLILWGPPGCG 226

Query: 67  KTTLAQVVARELGVNFRST--SGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRL 117
           KTTLA ++A     +           AK  D+  ++   +        + +LFIDEIHR 
Sbjct: 227 KTTLAHIIANNSKKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRF 286

Query: 118 SIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAA-----TTRVGLLTNPL 170
           +   ++   P +E   + L+    E PS +     LSR  +I          V +L   +
Sbjct: 287 NKSQQDTFLPHVECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAI 346

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
               GI +  +    + L       +    + + D+A   +A  S G  R     L+   
Sbjct: 347 NS-LGIHVLDSSRPTDPLSHSSN-SSSEPSVFIEDKAVDTLAYLSDGDARAGLNGLQLAV 404

Query: 231 DFAEVAHAKTITRE-----IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETI 285
             A ++  K   ++          L+     K G  Q  + Y      ++         I
Sbjct: 405 -LARLSSRKMFCKKSGQTYSPSRVLITENDVKEGLQQSHILYDRAGEEHYNC-------I 456

Query: 286 SAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           SA     R + +     ++ +       P    R L+  A + +G+  P
Sbjct: 457 SALHKSMRGSDQSASLYWLARMLEGGEDPLYVARRLVRFASEDIGLADP 505


>gi|78213812|ref|YP_382591.1| fused recombination factor protein RarA/unknown domain-containing
           protein [Synechococcus sp. CC9605]
 gi|78198271|gb|ABB36036.1| ATPase [Synechococcus sp. CC9605]
          Length = 721

 Score =  142 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 78/332 (23%), Positives = 130/332 (39%), Gaps = 51/332 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RPRTLEEF GQ    ++ ++   A KA  + + +++  GPPG+GKTTLA+++A 
Sbjct: 19  PLADRMRPRTLEEFEGQSGILADGRLLRRAIKA--DRVGNLILHGPPGVGKTTLARIIAN 76

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAM 129
               +F S +  V+A   +L   +     R        +LFIDE+HR +   ++ L P +
Sbjct: 77  HTRAHFSSLNA-VLAGVKNLRTEVDAARQRLERHGLRTILFIDEVHRFNSAQQDALLPWV 135

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E+  + L+    E P     K  +SR  L             L  R              
Sbjct: 136 ENGTVTLIGATTENPYFEVNKALVSRSRLFRLLPLEPEDLQRLLQR-------------- 181

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT--ITREI 245
                +RG     +A++ +AA  +   + G  R     L    + +E        I   I
Sbjct: 182 ALADNERGYGDRAIAISSDAANHLVDVAGGDARSLLNALELAVESSEPDGDGVIQINLAI 241

Query: 246 ADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           A+ ++ + A   DK G    D                   TISA +   R +  D    +
Sbjct: 242 AEESIQQRAVLYDKHGDAHYD-------------------TISAFIKSLRGSDSDAALFW 282

Query: 304 MIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           + +       PR   R ++  A + +G+  P 
Sbjct: 283 LARMVEAGENPRFIFRRMLIAAGEDIGLADPQ 314


>gi|146341536|ref|YP_001206584.1| recombination factor protein RarA [Bradyrhizobium sp. ORS278]
 gi|146194342|emb|CAL78366.1| putative polynucleotide enzyme with nucleotide triphosphate
           hydrolase domain [Bradyrhizobium sp. ORS278]
          Length = 444

 Score =  142 bits (358), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 74/342 (21%), Positives = 115/342 (33%), Gaps = 56/342 (16%)

Query: 6   GLLSRNVSQEDADI---SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
            L +    + DA       LRP  L +  GQ              + R   L  ++F GP
Sbjct: 12  SLFAAAGLEHDAPRPLPERLRPHKLSDVVGQDHILGPDGALTRMLETR--TLGSLIFWGP 69

Query: 63  PGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           PG GKTT+A+++A    ++F   S        + K  D A          +LF+DE+HR 
Sbjct: 70  PGTGKTTVARLLADATELHFEQISAVFSGVADLKKVFDAARARRETGQGTLLFVDEVHRF 129

Query: 118 SIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
           +   ++   P MED  + L+    E PS       LSR                   R  
Sbjct: 130 NRAQQDSFLPVMEDGTVVLVGATTENPSFELNAALLSR------------------SRVL 171

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
           I   L+   IE+L +  +       L + ++A   +   + G  R +  L   V   A  
Sbjct: 172 IFHSLDAAAIEELYSHAEEVEG-RKLPLDEDARHVLIRMADGDGRASLTLAEEVWRSA-- 228

Query: 236 AHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
              +          L R A   DK      +L                   ISA     R
Sbjct: 229 RKGEIFNAVQLQDVLQRRAPIYDKSADGHYNL-------------------ISAMHKSVR 269

Query: 294 DAIEDLIEPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
            +  D    Y  +       P    R ++ +A + +G+  P 
Sbjct: 270 GSDPDAALYYFARMLDAGEDPLFLARRIVRMAVEDIGLADPQ 311


>gi|297529269|ref|YP_003670544.1| ATPase AAA [Geobacillus sp. C56-T3]
 gi|297252521|gb|ADI25967.1| AAA ATPase central domain protein [Geobacillus sp. C56-T3]
          Length = 431

 Score =  142 bits (358), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 69/324 (21%), Positives = 117/324 (36%), Gaps = 41/324 (12%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +     +RPRT++E  GQ           +  K     +  +L  G PG GKT+LA  +A
Sbjct: 6   EPLAWRMRPRTIDEIVGQQHIIGPSTPLYKMVKKGH--VPSLLLYGEPGTGKTSLAYAIA 63

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           R  G  + + +    A   ++   +         +LFIDEIHRL+   +++L P +E   
Sbjct: 64  RTAGREWVAINA-TTAGKKEIEEAVEAARWSGNVLLFIDEIHRLNKAQQDVLLPHLESGL 122

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + L+    E P         SR   I        L     D   I ++    + E     
Sbjct: 123 VTLIGATTENPFHEVNPAIRSRCGQI------QQLKPLKPDDLMIILKRALADPE----- 171

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
             RG     + + +     IA  + G  R+A  LL      A+  H +    E   A+  
Sbjct: 172 --RGVGEPPVVIDESLLWRIAEAAGGDARVALSLLEAAVAAADERHGRLYIVEDIVASCT 229

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ---G 308
                    D+    Y ++              +SA     R +  D    Y+ +    G
Sbjct: 230 ANRGFTH--DKYGDHYYSL--------------LSAFQKSVRGSDADAALHYLARLLEGG 273

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIP 332
            +      R L+ +A++ +G+  P
Sbjct: 274 DLAAVC--RRLLVMAYEDIGLANP 295


>gi|74003977|ref|XP_535865.2| PREDICTED: similar to Werner helicase interacting protein isoform 1
           [Canis familiaris]
          Length = 427

 Score =  142 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 68/342 (19%), Positives = 119/342 (34%), Gaps = 59/342 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
              + +RP TL+++ GQ  A      L+  +E  +     +  ++  GPPG GKTTLA +
Sbjct: 6   PLATKMRPDTLQDYIGQSRAVGQDTLLRSLLETTE-----IPSLILWGPPGCGKTTLAHI 60

Query: 74  VARELGVNFRST--SGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEI 124
           +A     +           AK  D+  ++   +        + +LFIDEIHR +   ++ 
Sbjct: 61  IANNSKKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDT 120

Query: 125 LYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             P +E   + L+    E PS +     LSR  +I                         
Sbjct: 121 FLPHVECGTITLIGATTENPSFQVNAALLSRCRVIVL---------------------EK 159

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEA---------ACEIAMRSRGTPRIAGRLLRRVRDFA 233
             +E + TI+ R     G+ V D +         +   +  S      A   L  + D  
Sbjct: 160 LPVEAMVTILMRAINSLGIHVLDSSRPTDPLSHSSNSSSEPSVFIEDKAVDTLAYLSDGD 219

Query: 234 EVAH-AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEP 292
             A         +A   L+     K G  +  + Y      ++         ISA     
Sbjct: 220 ARAGLNGLQLAVLASRVLITENDVKEGLQRSHILYDRAGEEHYNC-------ISALHKSM 272

Query: 293 RDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           R + +     ++ +       P    R L+  A + +G+  P
Sbjct: 273 RGSDQSASLYWLARMLEGGEDPLYVARRLVRFASEDIGLADP 314


>gi|270291003|ref|ZP_06197226.1| ATPase [Pediococcus acidilactici 7_4]
 gi|270280399|gb|EFA26234.1| ATPase [Pediococcus acidilactici 7_4]
          Length = 425

 Score =  142 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 73/323 (22%), Positives = 116/323 (35%), Gaps = 41/323 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RPRTLEE  GQ       K+     KA+   L  ++  GPPG GKT++A  +A 
Sbjct: 3   PLAYRMRPRTLEEVVGQKHLVGPGKIISRMVKAK--RLSSMILYGPPGTGKTSIASAIAG 60

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR  +    +K    + A    +    VL +DEIHRL    ++ L P +E  Q+ 
Sbjct: 61  STKYAFRMLNAATDSKKQLQIVAEEAKMSGTVVLLLDEIHRLDKTKQDFLLPHLESGQII 120

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           L+    E P         SR  +                            +E      Q
Sbjct: 121 LIGATTENPYININPAIRSRTQIFEVKPLTPADIKE--------------AVEMALQDSQ 166

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI--TREIADAALL 251
           RG     L + + A   ++  + G  R A   +         +    I  T EI    L 
Sbjct: 167 RGLGDLPLQMDENALQFVSEATGGDLRSALNAVELAARSTSPSDDDKIHLTLEILQECLQ 226

Query: 252 RLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           + A   DK G    D      +   F     G +T +A        +  +    +++ G 
Sbjct: 227 KRALTQDKDGDAHYD------VISAFQKSIRGSDTDAA--------LHYMAR--LLESGD 270

Query: 310 IQRTPRGRLLMPIAWQHLGIDIP 332
           ++     R L+ IA++ +G+  P
Sbjct: 271 LKSVI--RRLLVIAYEDIGLANP 291


>gi|318040549|ref|ZP_07972505.1| recombination factor protein RarA/unknown domain fusion protein
           [Synechococcus sp. CB0101]
          Length = 745

 Score =  142 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 74/328 (22%), Positives = 127/328 (38%), Gaps = 43/328 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRPR+L++F GQ E     ++   A    A+ + +++  GPPG+GKTTLA+++A 
Sbjct: 32  PLADRLRPRSLDDFQGQEEILGPGRLLRRAI--HADRVGNLILYGPPGVGKTTLARIIAA 89

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAM 129
               +F S +  V+A   DL + +            R  LFIDE+HR +   ++ L P +
Sbjct: 90  STRAHFSSLNA-VLAGVKDLRSEVDEARRRLEQHGLRSFLFIDEVHRFNSAQQDALLPWV 148

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E+  + L+    E P     K  +SR  L           + L  R              
Sbjct: 149 ENGTVTLIGATTENPFFEVNKALVSRSRLFRLQPLQPQHLHQLLQR-------------- 194

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
             +  +RG     + +++EAA  +   + G  R     L    +         I  ++A 
Sbjct: 195 ALSDSERGYGDRQVVISNEAAAHLVDVAGGDARSLLNALELAVETTPPGPDGVIHIDLAI 254

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           A        +    Q  + Y          G    +TISA +   R +  D    ++ + 
Sbjct: 255 A--------EDSIQQRAVLY-------DKQGDAHFDTISAFIKSLRGSDPDAALFWLARM 299

Query: 308 GFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                 PR   R ++  A + +G+  P 
Sbjct: 300 VEAGENPRFIFRRMLISAGEDIGLADPQ 327


>gi|320354919|ref|YP_004196258.1| Recombination protein MgsA [Desulfobulbus propionicus DSM 2032]
 gi|320123421|gb|ADW18967.1| Recombination protein MgsA [Desulfobulbus propionicus DSM 2032]
          Length = 499

 Score =  142 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 74/339 (21%), Positives = 121/339 (35%), Gaps = 58/339 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP  LE+F GQ       K   +     +  +  ++  GPPG GKTTLA ++A 
Sbjct: 55  PLAERMRPTRLEDFVGQRHLVGEGKFLNQLI--DSGRIPSLVLWGPPGSGKTTLATILAH 112

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAM 129
            +  +F   S  V++   ++  ++   +          +LF+DEIHR +   ++   P +
Sbjct: 113 AVSAHFVFFSA-VLSGVKEIRQIVDQAKSVHEQDGRPTILFVDEIHRFNKSQQDAFLPHV 171

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E   L L+    E PS +     LSR  ++        L  PL DR  +   +    I+ 
Sbjct: 172 ESGLLTLIGATTENPSFQITAPLLSRCQVL--------LLAPL-DRNDLKQVMRRALIDT 222

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV---------RDFAEVAHA 238
                  G     L + D+A   +A  + G  R A   L            R  A     
Sbjct: 223 SV-----GFGDDRLTIDDQALDLLADTADGDCRRALNHLETAAALTLEQLKRQPAAGEAE 277

Query: 239 KTITREIADAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAI 296
           +TIT       L +     D  G +  +L                   ISA     RD+ 
Sbjct: 278 RTITVAQVRETLQQKTLRYDARGEEHYNL-------------------ISALHKSLRDSD 318

Query: 297 EDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            D    ++ +       P    R ++  A + +G   P 
Sbjct: 319 PDGAVYWLGRMLLGGEDPLYIARRMIRFASEDIGNADPQ 357


>gi|304385275|ref|ZP_07367620.1| AAA family ATPase [Pediococcus acidilactici DSM 20284]
 gi|304328482|gb|EFL95703.1| AAA family ATPase [Pediococcus acidilactici DSM 20284]
          Length = 425

 Score =  142 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 73/323 (22%), Positives = 116/323 (35%), Gaps = 41/323 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RPRTLEE  GQ       K+     KA+   L  ++  GPPG GKT++A  +A 
Sbjct: 3   PLAYRMRPRTLEEVVGQKHLVGPGKIISRMVKAK--RLSSMILYGPPGTGKTSIASAIAG 60

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR  +    +K    + A    +    VL +DEIHRL    ++ L P +E  Q+ 
Sbjct: 61  STKYAFRMLNAATDSKKQLQIVAEEAKMSGTVVLLLDEIHRLDKTKQDFLLPHLESGQII 120

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           L+    E P         SR  +                            +E      Q
Sbjct: 121 LIGATTENPYININPAIRSRTQIFEVKPLTPADIKE--------------AVEMALQDSQ 166

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI--TREIADAALL 251
           RG     L + + A   ++  + G  R A   +         +    I  T EI    L 
Sbjct: 167 RGLGDLPLQMDENALQFVSKATGGDLRSALNAVELAARSTSPSDDDKIHLTLEILQECLQ 226

Query: 252 RLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           + A   DK G    D      +   F     G +T +A        +  +    +++ G 
Sbjct: 227 KRALTQDKDGDAHYD------VISAFQKSIRGSDTDAA--------LHYMAR--LLESGD 270

Query: 310 IQRTPRGRLLMPIAWQHLGIDIP 332
           ++     R L+ IA++ +G+  P
Sbjct: 271 LKSVI--RRLLVIAYEDIGLANP 291


>gi|251798346|ref|YP_003013077.1| ATPase AAA [Paenibacillus sp. JDR-2]
 gi|247545972|gb|ACT02991.1| AAA ATPase central domain protein [Paenibacillus sp. JDR-2]
          Length = 436

 Score =  142 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 66/287 (22%), Positives = 112/287 (39%), Gaps = 30/287 (10%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD          +       +RP TL+++ GQ       K+   A +   + +  +L  G
Sbjct: 1   MDLFSYQEAETPRARLLADRMRPETLDDYIGQEHIIGAGKLLRRAIE--GDQVSSILLYG 58

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEI 114
           PPG GKTTLA ++++     F   +  V A   D+  ++   +        + +LF+DE+
Sbjct: 59  PPGCGKTTLANIISKRTAGEFVKLNA-VDASVKDVREVIDTAKTNKLMYGKKTILFLDEV 117

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++ L PA+E   +  +    E P        LSR TL            PL +
Sbjct: 118 HRFNTSRQDALLPAVEQGIIIFIGATTENPFHHVNGALLSRSTLFQL--------EPLNE 169

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR--RVR 230
           +  +         +D      RG     L   +EA   IA  + G  R A   L    V 
Sbjct: 170 KHALEAMKRALTDKD------RGLGFMTLHAEEEALQHIAAMAGGDIRRALNALELAAVT 223

Query: 231 DFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGG 277
             +E   +  IT E+A  ++ +  +      Q D+  L+   ++  G
Sbjct: 224 TPSEPDGSVRITMEVAQESIRKPTVRADTSTQYDV--LSAFHKSIRG 268


>gi|91977623|ref|YP_570282.1| recombination factor protein RarA [Rhodopseudomonas palustris
           BisB5]
 gi|91684079|gb|ABE40381.1| Recombination protein MgsA [Rhodopseudomonas palustris BisB5]
          Length = 443

 Score =  142 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 76/342 (22%), Positives = 115/342 (33%), Gaps = 56/342 (16%)

Query: 6   GLLSRNVSQEDADIS---LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
            L +    + DA       LRPR L +  GQ                R   L  ++F GP
Sbjct: 11  NLFAAAGLERDAPRPLPDRLRPRALGDVVGQDHILGPDGALTRMLATR--TLGSLVFWGP 68

Query: 63  PGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           PG GKTT+A+++A    ++F   S        + K  D A     +    +LF+DE+HR 
Sbjct: 69  PGTGKTTVARLLADATELHFEQISAVFSGVADLKKVFDAARARREMGTGTLLFVDEVHRF 128

Query: 118 SIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
           +   ++   P MED  + L+    E PS       LSR                   R  
Sbjct: 129 NKAQQDSFLPVMEDGTVVLVGATTENPSFELNAALLSR------------------ARVL 170

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
           +   L+   IE L    +R      L +  EA   +   + G  R +  L   V   A  
Sbjct: 171 VFQSLDAAAIEQLFANAERVEG-RALPLDAEARAVLVRMADGDGRASLTLAEEVWRSA-- 227

Query: 236 AHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
              +          L R A   DK      +L                   ISA     R
Sbjct: 228 REGEIFNAAQLQEILQRRAPIYDKSADGHYNL-------------------ISALHKSVR 268

Query: 294 DAIEDLIEPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
            +  D    Y+ +       P    R ++ +A + +G+  P 
Sbjct: 269 GSDPDAALYYLCRMFDAGEDPLFLARRVVRMAVEDIGLADPQ 310


>gi|119356781|ref|YP_911425.1| recombination factor protein RarA [Chlorobium phaeobacteroides DSM
           266]
 gi|119354130|gb|ABL65001.1| Recombination protein MgsA [Chlorobium phaeobacteroides DSM 266]
          Length = 446

 Score =  142 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 78/331 (23%), Positives = 125/331 (37%), Gaps = 55/331 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACS---NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
                +RPRTL++  GQ         L+ F+ + +        ++F GPPG GKTTLA +
Sbjct: 26  PLAERMRPRTLDDIMGQDHLVGRDAPLRRFLASGQ-----FPSMIFWGPPGSGKTTLAGI 80

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYP 127
            A  L   F   S  + +   ++   L N E       R +LFIDEIHR +   ++ L  
Sbjct: 81  CASSLQFGFEKLSA-IDSGVKEVRKALENAEKARRRGVRTMLFIDEIHRFNKAQQDTLLH 139

Query: 128 AMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           A+E+  + L+    E PS       LSR  +         + NPL DR    +  +    
Sbjct: 140 AIEEGLVVLVGATTENPSFEVNAALLSRAQV--------YILNPLGDREIEAVINHALTS 191

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI--TR 243
           + +            + + D     +   S G  R A   L            K++  TR
Sbjct: 192 DTV-------LSALSVVLEDP--DFLVRFSAGDARKALNALEAAIALVSECGQKSVVLTR 242

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           +I + AL   A         D            GG V  +T+SA +   R +  D    +
Sbjct: 243 KIFEQALQYRA------PVYD-----------KGGEVHYDTVSAFIKSMRGSDPDAALFW 285

Query: 304 MIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           + +       P+   R ++  A + +G   P
Sbjct: 286 LARMIEGGEDPKFIARRMVIFASEDVGNADP 316


>gi|75764869|ref|ZP_00744233.1| ATPase, AAA family [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|74487644|gb|EAO51496.1| ATPase, AAA family [Bacillus thuringiensis serovar israelensis ATCC
           35646]
          Length = 330

 Score =  142 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 78/325 (24%), Positives = 128/325 (39%), Gaps = 39/325 (12%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           +      +RP  ++E  GQ       K+     +A       ++  GPPG GKT++A  +
Sbjct: 2   KQPLAHRMRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYGPPGTGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           A   G  FR  +  V     D+  ++   +     VL +DE+HRL    ++ L P +E  
Sbjct: 60  AGSTGTPFRLLNA-VTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESG 118

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            L L +G   S     IN    + I +  ++  L    +D   I ++    + E      
Sbjct: 119 LLTL-IGATTSNPFHAIN----SAIRSRCQIFELHALTEDDILIGLKRALEDKE------ 167

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR--DFAEVAHAKTITREIADAAL 250
            +G     + +TDEA       S G  R A   L       F     A  IT EIA+  L
Sbjct: 168 -KGLGEYAVTITDEALHHFTNASGGDMRSAYNALELAVLSSFTTDDQAAEITLEIAEECL 226

Query: 251 LRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            + +   DK G    D+  L+   ++  G  V              A+  L    +I+ G
Sbjct: 227 QKKSFVHDKGGDAHYDV--LSAFQKSVRGSDV------------NAALHYLAR--LIEAG 270

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIPH 333
            +Q    GR L+ +A++ +G+  P 
Sbjct: 271 DLQSI--GRRLLIMAYEDIGLASPQ 293


>gi|302807036|ref|XP_002985249.1| hypothetical protein SELMODRAFT_121732 [Selaginella moellendorffii]
 gi|300147077|gb|EFJ13743.1| hypothetical protein SELMODRAFT_121732 [Selaginella moellendorffii]
          Length = 503

 Score =  142 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 63/339 (18%), Positives = 112/339 (33%), Gaps = 46/339 (13%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLG 66
           +N          +RP ++ +  GQ         LK  +E      ++L  V+F GPPG G
Sbjct: 85  KNSKAAVPLAERMRPTSVNDILGQDHLLGPRGILKSLLE-----GDSLASVIFWGPPGTG 139

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSII 120
           KTTLA+ +A  +   F + S  V +   ++  +L   +       R +LF+DE+HR +  
Sbjct: 140 KTTLARAIASTVSYRFVALSA-VTSGVKEVREVLEEAKKAKKYGQRTLLFLDEVHRFNKA 198

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++   P +E   +  +    E PS       LSR  ++     +      L  R  +  
Sbjct: 199 QQDAFLPYVEAGHVVFVGATTENPSFEINAALLSRCKVLTMNKLLPEHLEKLIKRAVLDK 258

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
                    +       +        D      A            L   V   +     
Sbjct: 259 EKGVIVSAGI------SSPEMLRVEDDAVVFLAAAADGDARAALNTLEIAVLAASSRFQM 312

Query: 239 KTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAI 296
             +T      AL R     DK G +  +   ++ + ++  GG                  
Sbjct: 313 MVVTLADVKDALQRSHVFYDKTGEEHYN--IISALHKSMRGGDA---------------- 354

Query: 297 EDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            D    ++ +       P    R L+  A + +G+  P 
Sbjct: 355 -DASIYWLARMLEGGEGPLYVARRLVRFASEDVGLADPQ 392


>gi|89100968|ref|ZP_01173813.1| ATPase, AAA family domain protein [Bacillus sp. NRRL B-14911]
 gi|89084304|gb|EAR63460.1| ATPase, AAA family domain protein [Bacillus sp. NRRL B-14911]
          Length = 423

 Score =  142 bits (357), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 68/320 (21%), Positives = 121/320 (37%), Gaps = 41/320 (12%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            +RP+++E+  GQ       K+     KAR   L  ++  GPPG+GKT++A  +A     
Sbjct: 9   RMRPKSIEDIIGQEHLVGEGKIIYRMVKARQ--LSSMILYGPPGIGKTSIASAIAGSTQF 66

Query: 81  NFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137
            FR+ +     K   ++ A    +  + +L +DE+HRL    ++ L P +E+  + L+  
Sbjct: 67  AFRTLNAVTNNKKDMEVVAAEAKMSGKVILLLDEVHRLDKAKQDFLLPYLENGMIVLIGA 126

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
               P         SR  +            PL +       L   + +      + G  
Sbjct: 127 TTSNPYHAINPAIRSRCQIFEL--------KPLSEEDIKKSLLRALQDK------ENGFG 172

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE--IADAALLRLA- 254
              + + ++A   +A  S G  R +   L       E      I+     A+  L R + 
Sbjct: 173 NEKVEIDEDALSHLASSSNGDVRSSLNALELAVLSTEKDENGVISISLGTAEECLQRKSF 232

Query: 255 -IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
             DK G    D+  L+   ++  G  V      A L              +I+ G +   
Sbjct: 233 VHDKDGDAHYDV--LSGFQKSIRGSDVN-----AAL---------HYLGRLIEAGDLVSI 276

Query: 314 PRGRLLMPIAWQHLGIDIPH 333
              R L+ IA++ +G+  P 
Sbjct: 277 S--RRLLVIAYEDIGLASPQ 294


>gi|172040631|ref|YP_001800345.1| recombination factor protein RarA [Corynebacterium urealyticum DSM
           7109]
 gi|171851935|emb|CAQ04911.1| conserved hypothetical protein [Corynebacterium urealyticum DSM
           7109]
          Length = 461

 Score =  142 bits (357), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 78/322 (24%), Positives = 123/322 (38%), Gaps = 41/322 (12%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            +RPR+L E  GQ                R +    V+  GPPG GKTT+A +++   G 
Sbjct: 35  RMRPRSLAEVVGQDHVLGPGTPLQRLIDGRGD--SSVILFGPPGTGKTTIASLISAASGR 92

Query: 81  NFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           +F + S  + +   ++ A++ +         R VLFIDE+HR S   ++ L  A+E+  +
Sbjct: 93  HFVALSA-LNSGVKEVRAVIEDARRRLLHGARTVLFIDEVHRFSKTQQDALLAAVENRTV 151

Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            L+    E PS   V   LSR  L+   +          D  GI   L            
Sbjct: 152 LLVAATTENPSFSVVSPLLSRSLLVQLKSL---------DEDGIKSVLR------RAIAD 196

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           +RG     + + D+A  ++A  S G  R +   L  V      A      +E  D A   
Sbjct: 197 ERGLAG-QVQIADDALDQLAAVSGGDARRSLTYLEAV------AEDVLQQKEAGDEAPTI 249

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
              D      +       +AR    G    +  SA +   R +  D    Y+ +      
Sbjct: 250 TVAD------VTRSTNKAVARYDRDGDQHYDVTSAFIKSMRGSDPDAALHYLARMLEGGE 303

Query: 313 TPR--GRLLMPIAWQHLGIDIP 332
            PR   R L+ +A + +G   P
Sbjct: 304 DPRFISRRLVIVASEDIGTADP 325


>gi|310816981|ref|YP_003964945.1| ATPase, AAA family protein [Ketogulonicigenium vulgare Y25]
 gi|308755716|gb|ADO43645.1| ATPase, AAA family protein [Ketogulonicigenium vulgare Y25]
          Length = 441

 Score =  142 bits (357), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 65/326 (19%), Positives = 109/326 (33%), Gaps = 50/326 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRPR L +  GQ +               + +L  ++  GPPG+GKTT+A+++A 
Sbjct: 19  PLADRLRPRALGDVIGQEQVLGADAPL--GIMLASHSLSSLILWGPPGVGKTTIARLLAD 76

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
           +  + F   S      P + K  + A L        +LF+DEIHR +   ++   P MED
Sbjct: 77  QTSLAFVQISAIFTGVPDLKKVFEGARLRRANGQGTLLFVDEIHRFNKAQQDSFLPHMED 136

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             + L+    E PS       LSR  ++                       N   + DL+
Sbjct: 137 GTIVLVGATTENPSFELNAALLSRAQVLVL---------------------NRLTLADLE 175

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            + QR  +     +        A            LL                  + +  
Sbjct: 176 RLAQRAEQELARKLPLNGPARDA------------LLEMA------DGDGRALLNLIEQV 217

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           +       +  D L  R +    R    G      ISA     R +  D    +  +   
Sbjct: 218 MAWRVQQPLTTDDLSRRLMKRAVRYDKSGDEHYNLISALHKSVRGSDPDAALYWFNRMLL 277

Query: 310 IQRTPR--GRLLMPIAWQHLGIDIPH 333
               PR   R ++ ++ + +G+  P 
Sbjct: 278 GGEDPRFLARRMVRMSVEDIGLADPQ 303


>gi|296087560|emb|CBI34149.3| unnamed protein product [Vitis vinifera]
          Length = 397

 Score =  142 bits (357), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 65/328 (19%), Positives = 112/328 (34%), Gaps = 57/328 (17%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPRT+++  GQ    S+  +   A    +  L  ++  GPPG GKT++A+ +       
Sbjct: 1   MRPRTVDDVVGQDHLLSHKSLLRSAI--DSNRLPSIILWGPPGTGKTSIAKAIVNSSSQP 58

Query: 82  FRSTS---GPVIAKAGDLAALLTNLED----------RDVLFIDEIHRLSIIVEEILYPA 128
                     V A   D+  ++               R +LF+DE+HR +   ++   P 
Sbjct: 59  SSYRFVSLSAVTAGVKDVRDVVEEARKIKVSKNMNSKRTLLFVDEVHRFNKSQQDSFLPV 118

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           +ED  +  +    E PS   +   LSR  ++            L +R           + 
Sbjct: 119 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLQPSHVASLLNR----------AVA 168

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           D    +        + V+D+A   ++    G  R+A   L      A    A        
Sbjct: 169 DTGRGLAWSVGGASIEVSDDAIDFLSSHCDGDARVALNALEISAVTAAAREALQS----- 223

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
                 LA DK G +  +L                   ISA     R +  D    ++ +
Sbjct: 224 ----KHLAYDKAGEEHYNL-------------------ISALHKSMRGSDADASIYWLAR 260

Query: 307 QGFIQRTPR--GRLLMPIAWQHLGIDIP 332
                  P    R L+  A + +G+  P
Sbjct: 261 MLEGGEEPLYIARRLIRFASEDVGLADP 288


>gi|87308504|ref|ZP_01090644.1| hypothetical protein DSM3645_14130 [Blastopirellula marina DSM
           3645]
 gi|87288596|gb|EAQ80490.1| hypothetical protein DSM3645_14130 [Blastopirellula marina DSM
           3645]
          Length = 461

 Score =  142 bits (357), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 77/344 (22%), Positives = 124/344 (36%), Gaps = 62/344 (18%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           ++N  +     + +RP TL EF GQ       K+     +A  + L+ VLF GPPG GKT
Sbjct: 21  AKNFDRIRPLAARMRPHTLAEFAGQTHFLGEGKLLRRLIQA--DRLNSVLFYGPPGTGKT 78

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIV 121
           TLAQ++ARE    F   +  V +   +L  +L   +D       R +LFIDEIHR +   
Sbjct: 79  TLAQLLARECRSRFEQLNA-VTSGVKELREVLQKAKDEIAVGGRRTLLFIDEIHRFNKSQ 137

Query: 122 EEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           ++ L P +E+  + L+      P        +SR                         +
Sbjct: 138 QDALLPDVENGVVILVGATTSNPFFAVNSALVSRSQ---------------------VFQ 176

Query: 180 LNFYEIEDLKTIVQR-------GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR-VRD 231
                 +D+K ++ R       G     + + ++A   +A  S G  R A   L   V  
Sbjct: 177 FQPLSPDDIKQLIHRALADKSVGLGDIPVNIHEDALHFLAEVSDGDARRALNALEIGVLS 236

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
             E     T            +  D+ G    D                     SA +  
Sbjct: 237 SKERPVEFTQELAAESVQRKAVQYDRDGDSHYDAA-------------------SALIKS 277

Query: 292 PRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            R +  D    ++ +        R   R L+ +A + +G   P+
Sbjct: 278 IRGSDPDAALYWLARMLEGGEDVRFLTRRLVILASEDVGNADPN 321


>gi|237785603|ref|YP_002906308.1| hypothetical protein ckrop_1012 [Corynebacterium kroppenstedtii DSM
           44385]
 gi|237758515|gb|ACR17765.1| conserved hypothetical protein [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 459

 Score =  142 bits (357), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 70/322 (21%), Positives = 119/322 (36%), Gaps = 48/322 (14%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            +RPR L+E  GQ              +   +    V+  GPPG GKTT+A +V+   G 
Sbjct: 42  RMRPRNLDEVVGQEHVLGQGSPLRRLVEGAGD--SSVILFGPPGTGKTTIASLVSSTTGR 99

Query: 81  NFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
            FR  S  + +   ++ ++L           + VLFIDE+HR S   ++ L  A+E+  +
Sbjct: 100 RFRVLSA-LSSGVKEIRSVLKEARQALIDGVQTVLFIDEVHRFSKTQQDALLAAVENRTV 158

Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            L+    E P+   V   LSR  L+           PL D             E ++T++
Sbjct: 159 LLVAATTENPNFAVVGPLLSRSLLVQL--------EPLDD-------------EAIRTVI 197

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R   ++                     +AG   RR   + E +       E     ++ 
Sbjct: 198 NRS--VSSQRGLAGRIRIDDDAVNSIVAMAGGDARRALTYVEASAQSLDDGETITPEIVA 255

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
             +D+             + +    G    + ISA +   R +  D    Y+ +      
Sbjct: 256 NNVDR------------ALVKYDRDGDQHYDVISAFIKSIRGSDVDAALHYLARMVEAGE 303

Query: 313 TPR--GRLLMPIAWQHLGIDIP 332
            PR   R L+ +A + +G+  P
Sbjct: 304 DPRFIARRLVILASEDIGMADP 325


>gi|269977315|ref|ZP_06184288.1| recombination factor protein RarA [Mobiluncus mulieris 28-1]
 gi|269934618|gb|EEZ91179.1| recombination factor protein RarA [Mobiluncus mulieris 28-1]
          Length = 445

 Score =  142 bits (357), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 76/339 (22%), Positives = 124/339 (36%), Gaps = 57/339 (16%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
                E      +RPR+L+E  GQ    +           + +    V+  GPPG GKTT
Sbjct: 15  PEFRAEAPLAVRMRPRSLDELVGQEHLLAQNSPLRRLLSGQTDMASSVILFGPPGTGKTT 74

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVE 122
           LA +VA+  G  +   S  + A   ++  ++ + + R        +LF+DE+HR S   +
Sbjct: 75  LAFLVAQAGGREYVQLSA-ISAGVKEVREVIDSAKRRLNLEGKETILFLDEVHRFSKSQQ 133

Query: 123 EILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           + L  A+E+  + L+    E P+   +            +  + L   PL          
Sbjct: 134 DSLLSAVENRWIVLVAATTENPTFSVISP--------LLSRSLLLNLRPL---------- 175

Query: 181 NFYEIEDLKTIVQRGA----KLTGLAVTDEAACEIAMR-SRGTPRIAGRLLRRVRDFAEV 235
              + E + TIV+R       L G     EAA E  +R +    R +  LL  V   A  
Sbjct: 176 ---DTEAISTIVERALTDSRGLGGKFQLTEAAREAIVRLAGSDGRKSLTLLEAVAGGAAS 232

Query: 236 AHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDA 295
             A  IT E   AA     +     +  D+                    SA +   R +
Sbjct: 233 RGASEITAEDVAAAADTAIVRYNIDEHYDVA-------------------SAFIKSMRGS 273

Query: 296 IEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
             D    Y+ +       PR   R ++  A + +G+  P
Sbjct: 274 DPDAALHYLARMIRGGEDPRFIARRVVIAAAEDVGLADP 312


>gi|26451436|dbj|BAC42817.1| unknown protein [Arabidopsis thaliana]
          Length = 525

 Score =  142 bits (357), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 73/345 (21%), Positives = 125/345 (36%), Gaps = 50/345 (14%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           R  L S +  Q       +RPRTL++  GQ    S   +   A +  +  L  ++F GPP
Sbjct: 89  RHKLSSSSHRQHQPLSERMRPRTLDDVAGQDHLLSPSSLLRSAVE--SNRLPSIVFWGPP 146

Query: 64  GLGKTTLAQVV---ARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDE 113
           G GKT++A+ +   +++  +    +   V +   D+   + + +        R VLF+DE
Sbjct: 147 GTGKTSIAKSLINSSKDPSLYRFVSLSAVTSGVKDVRDAVESAKRLNLEGRKRTVLFMDE 206

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           +HR +   ++   P +ED  +  +    E PS   +   LSR  ++            L 
Sbjct: 207 VHRFNKSQQDTFLPVIEDGSILFIGATTENPSFHLITPLLSRCRVLTLNPLKPNHVETLL 266

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R                   +RG     + V D     +A    G  R+A   L     
Sbjct: 267 RR--------------AVDDSERGLP-NSVEVDDSVIEFLANNCDGDARVALNALEISAT 311

Query: 232 FAEVAH--AKTITREIADAALL--RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISA 287
            A         ++ + A  AL    LA DK G    +   ++ + ++  GG         
Sbjct: 312 MATTRAGTDAVVSIDDAKEALQCKHLAYDKAGEQHYN--LISALHKSMRGGDANAAIYWL 369

Query: 288 GLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
                   +E   EP  I           R L+  A + +G+  P
Sbjct: 370 A-----RMLEGGEEPLYI----------ARRLIRFASEDIGLADP 399


>gi|332993165|gb|AEF03220.1| recombination factor protein RarA [Alteromonas sp. SN2]
          Length = 444

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 67/327 (20%), Positives = 112/327 (34%), Gaps = 47/327 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP T++E+ GQ       K   +  +A       ++  GPPG GKTTLA+++A 
Sbjct: 14  PLAAKMRPVTIDEYAGQSHLLGTNKPLRKMLEAGH--CHSMILWGPPGTGKTTLAELIAT 71

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAME 130
               +    S  V +   D+ A +   +       R +LF+DE+HR +   ++   P +E
Sbjct: 72  YTNASVIRISA-VTSGVKDIRAAMDAAKENSRYNQRTLLFVDEVHRFNKSQQDAFLPFVE 130

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
              +  +    E PS       LSR  +             L  R               
Sbjct: 131 SGTVTFIGATTENPSFELNNALLSRVRVYVLKALEQEALAELMQR--------------A 176

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
            T  ++G     L++ ++A+  +     G  R     L    DF E      I+    + 
Sbjct: 177 LTDEEKGLGSRQLSIEEDASNALLGLCGGDGRRLLTYLELAADFTE---NSVISIADIEQ 233

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ- 307
           A+                    IA     G    + ISA     R +  D    +  +  
Sbjct: 234 AVGEK-----------------IASYDNKGDTFYDLISAFHKSVRGSDPDAALYWYARIL 276

Query: 308 -GFIQRTPRGRLLMPIAWQHLGIDIPH 333
            G        R L+ IA + +G   P 
Sbjct: 277 DGGGDALYVARRLLAIASEDIGNADPR 303


>gi|298252773|ref|ZP_06976567.1| helicase subunit of the Holliday junction resolvase-like ATPase
           [Gardnerella vaginalis 5-1]
 gi|297533137|gb|EFH72021.1| helicase subunit of the Holliday junction resolvase-like ATPase
           [Gardnerella vaginalis 5-1]
          Length = 462

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 87/363 (23%), Positives = 134/363 (36%), Gaps = 72/363 (19%)

Query: 2   MDREGLLSRNVSQE--DADISLLRPRTLEEFTGQVEACSNLKVFIEAA----KARAEALD 55
           M+++   + +V  +        +RP ++E+  GQ  A          A    K    A  
Sbjct: 1   MEQDLFAASSVPSDVTRPLAVRMRPSSIEDVLGQSHALKEGSPLRRLANPQSKGSLTAPS 60

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DV 108
            V+  GPPG+GKTTLA +VAR+ G  F   S  V +   D+ A+L    +R        V
Sbjct: 61  SVVLFGPPGVGKTTLAYIVARQSGRVFEELSA-VTSGVKDVRAVLDRAHERLVSNGQETV 119

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLL 166
           LFIDE+HR S   ++ L P++E+  +  +    E PS   +K  LSR  ++   +     
Sbjct: 120 LFIDEVHRFSKSQQDALLPSVENRDVTFIGATTENPSFSIIKPLLSRSVVVKLAS----- 174

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT-----GLAVTDEAACEIAMRSRGTPRI 221
                             +EDL T+++R           L + D+A   I   S G  R 
Sbjct: 175 ----------------LSVEDLHTLIERALTSENGLNNQLKINDDAIDSIIRLSGGDARK 218

Query: 222 AGRLLRRVR-----DFAEVAHAK----TITREIADAALLRLAIDKMGFDQLDLRYLTMIA 272
              +L         D A     K    T            +  DK G D  D+       
Sbjct: 219 TLTILEAAAGAVTGDVALQHGKKKPVITADIVSNVMDTTTVRYDKDGDDHYDV------- 271

Query: 273 RNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGID 330
                       ISA +   R +  D    Y+ +       PR   R +M  A + +G+ 
Sbjct: 272 ------------ISAFIKSMRGSDVDASLHYLARMLRAGEDPRFIARRIMIAAAEEVGMA 319

Query: 331 IPH 333
            P 
Sbjct: 320 APQ 322


>gi|113954265|ref|YP_731698.1| recombination factor protein RarA/unknown domain fusion protein
           [Synechococcus sp. CC9311]
 gi|113881616|gb|ABI46574.1| ATPase [Synechococcus sp. CC9311]
          Length = 733

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 73/331 (22%), Positives = 125/331 (37%), Gaps = 42/331 (12%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           Q+      LRP +LEEF GQ    +  ++   A  A  + + +++  GPPG+GKTTLA++
Sbjct: 16  QQAPLADRLRPTSLEEFAGQNAILAEGRLLRRAIAA--DRVGNLILHGPPGVGKTTLARI 73

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILY 126
           +A      F S +  V+A   DL   +   ++R        +LFIDE+HR +   ++ L 
Sbjct: 74  IATHTRAQFSSLNA-VLAGVKDLREQVDAAKERLERHGLRTILFIDEVHRFNSAQQDALL 132

Query: 127 PAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           P +E+  L L+    E P     K  +SR  L    +      + L  R           
Sbjct: 133 PWVENGTLTLIGATTENPYFEVNKALVSRSRLFRLQSLEANDLHQLLHR----------- 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
                   +RG     + +T EA   +   + G  R     L    +       +   + 
Sbjct: 182 ---ALHDKERGYGNRLVTITPEAEAHMVDVANGDARSLLNALELAVESTTTTDPEATIKI 238

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
               A       +    +  + Y          G    +TISA +   R +  D    ++
Sbjct: 239 DLTIA-------EESIQERAVLY-------DKQGDAHFDTISAFIKSLRGSDADAALFWL 284

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +       PR   R ++  A + +G+  P 
Sbjct: 285 ARMLEAGENPRFIFRRMLISAGEDIGLADPQ 315


>gi|238018960|ref|ZP_04599386.1| hypothetical protein VEIDISOL_00820 [Veillonella dispar ATCC 17748]
 gi|237864444|gb|EEP65734.1| hypothetical protein VEIDISOL_00820 [Veillonella dispar ATCC 17748]
          Length = 433

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 80/344 (23%), Positives = 132/344 (38%), Gaps = 52/344 (15%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD    ++   + E   +  +RP TL+   GQ +A           +   + +  +LF G
Sbjct: 1   MDSLFDMTPTNTYEPLPV-RMRPTTLDHLYGQEKAVGKGTFLRAMVEK--DTIPSMLFYG 57

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALL-------TNLEDRDVLFIDEI 114
           P G GKTTLA ++A+ +  +         A  G+L  ++        +L+ R +LF+DEI
Sbjct: 58  PCGTGKTTLAGIIAK-VSNSHFVNLNATNAGIGELRNIIEDARKRVRSLQQRTILFLDEI 116

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   +++L P +ED  + L+    E P     +  LSR  LI               
Sbjct: 117 HRFNKSQQDVLLPCVEDGTIILIGATTENPFFEVNRPLLSRLRLITLEALTPKA------ 170

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
             G  +R    + E        G     L VTDE   ++ +   G  R+A  +L +    
Sbjct: 171 -IGQILRRAITDEEV-------GLGKRHLQVTDEVLEDVGIFVNGDGRMALNILEQAA-- 220

Query: 233 AEVAHAKTITREIADAALLR--LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
           A V    TI+ E+ +  + R     DK G    D                   TISA + 
Sbjct: 221 AMVPDEGTISIEVLEKVVGRRIYTYDKKGDSHYD-------------------TISAFIK 261

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
             R +       Y+ +       P    R ++  A + +G+  P
Sbjct: 262 SMRGSDVQATVHYLARMIEAGEDPNFIARRIVICAAEDVGLADP 305


>gi|313207354|ref|YP_004046531.1| AAA ATPase central domain protein [Riemerella anatipestifer DSM
           15868]
 gi|312446670|gb|ADQ83025.1| AAA ATPase central domain protein [Riemerella anatipestifer DSM
           15868]
 gi|315023249|gb|EFT36259.1| ATPase, AAA family protein [Riemerella anatipestifer RA-YM]
 gi|325335187|gb|ADZ11461.1| the helicase subunit-like protein of the Holliday junction
           resolvase [Riemerella anatipestifer RA-GD]
          Length = 425

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 71/331 (21%), Positives = 126/331 (38%), Gaps = 54/331 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP+TL+E  GQ           +      + L+ ++  GPPG GKTTLA++++ 
Sbjct: 6   PLAEKLRPKTLDEMLGQEHLTGKDGTIRKM--LDTDRLNSLILWGPPGTGKTTLAEILSE 63

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAM 129
           + G  F   S  V +   ++  ++ + + +        +LFIDEIHR +   ++ L  A+
Sbjct: 64  QSGRKFFKLSA-VSSGVKEVREVIDDAKKQHLFSGKSPILFIDEIHRFNKSQQDSLLHAV 122

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E   + L+    E PS   V   LSR  +         +  PL          ++ ++E+
Sbjct: 123 EKGWVILIGATTENPSFEVVSALLSRSQV--------YILKPL----------SYEKLEE 164

Query: 188 LKTI-VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           L TI V R  +      T E        S G  R     +  V +  + +    ++ E  
Sbjct: 165 LATIAVARFNQDENTDFTIENNQGFIQYSGGDARKLINSVEWVLNQYKGSGQNQLSSETI 224

Query: 247 DAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
              L       DK G    D+                   ISA +   R +  +    ++
Sbjct: 225 LKVLQETIPVYDKNGEQHYDV-------------------ISAFIKSIRGSDVNAALYWL 265

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +        +   R L+ +A + +G+  P+
Sbjct: 266 GRMLVGGEDIKFIARRLLILAAEDIGLANPN 296


>gi|328955597|ref|YP_004372930.1| Recombination protein MgsA [Coriobacterium glomerans PW2]
 gi|328455921|gb|AEB07115.1| Recombination protein MgsA [Coriobacterium glomerans PW2]
          Length = 462

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 78/350 (22%), Positives = 133/350 (38%), Gaps = 46/350 (13%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M      +  + ++ DA ++  +RP +L +F GQ EA        +A +   + L  V+ 
Sbjct: 1   MDTLFTAVESDETRRDAPLAVRMRPSSLADFVGQSEAVGPGSWLRQAIEL--DRLSSVIL 58

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFID 112
            GP G+GKTTLA+++A      F   S  V     DL   + + + R        +LFID
Sbjct: 59  FGPAGVGKTTLARIIAMNTRSEFIEVSA-VSGTVKDLRRAIEDAKRRLLSLDRRTILFID 117

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           EIHR S   ++ L  A+ED  + ++    E P        LSR  ++           PL
Sbjct: 118 EIHRFSKSQQDTLLHAVEDRVVVMVGATTENPFFEVNSALLSRSRIVEL--------KPL 169

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAK-----LTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           QD             E++  +++R            A  ++    IA+ + G  R A   
Sbjct: 170 QD-------------EEIGALIRRALGSPRGLAGRFAADEQTVDAIALMAAGDARAALTT 216

Query: 226 LRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETI 285
           L    + A             +A      + ++G D +D+            G    + I
Sbjct: 217 LELASEIALTHSEGQGQDGDTNA-----GVIEIGRDDVDMVNPRPGLSYDKDGDAHYDVI 271

Query: 286 SAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           SA +   R +  D    ++ +       P+   R +M  A + +G   P 
Sbjct: 272 SAFIKSMRGSDPDAAIYWLARMIDAGEDPKFIARRIMIAASEDVGNADPQ 321


>gi|313827647|gb|EFS65361.1| recombination factor protein RarA [Propionibacterium acnes
           HL063PA2]
          Length = 446

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 87/337 (25%), Positives = 131/337 (38%), Gaps = 47/337 (13%)

Query: 9   SRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           S +    DA ++  LRPRT++E  GQ    +        A+        V   GPPG+GK
Sbjct: 22  SLDTPNPDAPLAVRLRPRTIDEIVGQQHLLTPGSPLRRLAEGTGAM--SVFLWGPPGVGK 79

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIV 121
           TT+A VV+      F   S  V A   D+   L     +       VLF+DE+HR S   
Sbjct: 80  TTIASVVSHATNRRFVEISA-VTAGVKDIRRELDTARRQLALGQPTVLFVDEVHRFSKAQ 138

Query: 122 EEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +++L PA+E+  + L+    E PS   +   LSR  L+          + L DR      
Sbjct: 139 QDVLLPAVENRTVTLIAATTENPSFSVISPLLSRSLLLTLKPLTEADVSSLLDR------ 192

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
               +   L+T   R        + D+A  ++   + G  R A   L      A  A   
Sbjct: 193 -ALSDPRGLRTESDR-----RYVLEDDARADLLQLAAGDARRALTYLEEAAAGASAAGTD 246

Query: 240 TITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
           TIT +I   A+ R A   D+ G    D+                   ISA +   R +  
Sbjct: 247 TITSQIVSTAVDRAAVRYDRDGDQHYDV-------------------ISAFIKSVRGSDV 287

Query: 298 DLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           D    Y+ +       PR   R L+ +A + +G+  P
Sbjct: 288 DAALHYLARMIEAGEDPRFIARRLIILASEDIGMAAP 324


>gi|311748366|ref|ZP_07722151.1| ATPase, AAA family [Algoriphagus sp. PR1]
 gi|126576875|gb|EAZ81123.1| ATPase, AAA family [Algoriphagus sp. PR1]
          Length = 420

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 68/324 (20%), Positives = 118/324 (36%), Gaps = 46/324 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP  LE+  GQ    S      +A K+    +  ++  GPPG+GKTT+A ++A 
Sbjct: 5   PLAERMRPVRLEDLIGQEHLSSPNSFLFKAIKSGN--VPSLILWGPPGVGKTTIANIIAN 62

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           E+   F + S  + +   D+  ++     +   VLFIDEIHR +   ++ L  A+E   +
Sbjct: 63  EIKAPFYTLSA-ISSGVKDIREVIEKAKFQMGVVLFIDEIHRFNKSQQDALLGAVEKGII 121

Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            L+    E PS       LSR  +    +        +               + L+  V
Sbjct: 122 RLIGATTENPSFEVNAALLSRCQVFTLNSLGKPELEAMV-------------HQALEKDV 168

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
               K   + + +  A      S G  R    LL  V D            ++   A  +
Sbjct: 169 D--LKKLNVELKETDALLRI--SGGDGRKLLNLLEIVIDGINEDPCIITDEKVMQIAQQK 224

Query: 253 LA-IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
           +A  DK G    D+                   ISA +   R +  +    ++ +     
Sbjct: 225 VALYDKSGEQHYDI-------------------ISAFIKSIRGSDPNAAVYWLARMIEGG 265

Query: 312 RTPR--GRLLMPIAWQHLGIDIPH 333
              +   R L+ +A + +G   P+
Sbjct: 266 EDVKFIARRLVILASEDIGNANPN 289


>gi|110598474|ref|ZP_01386745.1| AAA ATPase, central region [Chlorobium ferrooxidans DSM 13031]
 gi|110339924|gb|EAT58428.1| AAA ATPase, central region [Chlorobium ferrooxidans DSM 13031]
          Length = 447

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 74/332 (22%), Positives = 123/332 (37%), Gaps = 58/332 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
                +RPR+L++  GQ         L+ FI + +     L  ++F GPPG GKTTLA++
Sbjct: 26  PLAERVRPRSLDDMAGQEHLVGPSGPLRRFISSGQ-----LPSMIFWGPPGSGKTTLAEI 80

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYP 127
            A  L   F   S  + +   D+   L N +       R +LFIDEIHR +   ++ L  
Sbjct: 81  CAASLNYRFEQLSA-IDSGVKDVRKALDNAQKSRASGLRTILFIDEIHRFNKGQQDTLLH 139

Query: 128 AMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           A+E   + L+    E PS       LSR  +         +  PLQ    + +     + 
Sbjct: 140 AIEQGLIVLIGATTENPSFEVNAALLSRMQV--------YILKPLQSEEILAVIRRALKE 191

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD-FAEVAHAKTITRE 244
           + L            + + D     +   + G  R A   +        +      + RE
Sbjct: 192 DRLF-------GELQIEIADP--DFLLQFAGGDARKALNAVETALSLLPQDQTEIVLDRE 242

Query: 245 IADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           + + AL   A   DK G +  D+                   ISA +   R +  D    
Sbjct: 243 LLERALQHRAPVYDKGGENHYDV-------------------ISAFIKSMRGSDPDAALF 283

Query: 303 YMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           ++ +       P+   R ++  A + +G   P
Sbjct: 284 WLARMIEGGEDPKFIARRMVIFASEDIGNADP 315


>gi|256545396|ref|ZP_05472759.1| AAA family ATPase [Anaerococcus vaginalis ATCC 51170]
 gi|256398957|gb|EEU12571.1| AAA family ATPase [Anaerococcus vaginalis ATCC 51170]
          Length = 443

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 70/343 (20%), Positives = 123/343 (35%), Gaps = 46/343 (13%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD   L      ++ A ++  +RP  +E+F GQ       K+     K  ++ +   +F 
Sbjct: 1   MDLFELNKLRELEKSAPLADRMRPEKIEDFLGQDHLLGEGKILRRMIK--SDRIYSSIFY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDE 113
           GPPG+GKTTLA++++    + F   S  V +   DL   +   +D       + +LFIDE
Sbjct: 59  GPPGVGKTTLAKIISNSTNMAFEKVSA-VASGINDLKKKIQIAKDNLKFENKKTILFIDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++ L P +ED  + L+    E P     K  +SR  +             L 
Sbjct: 118 IHRFNKSQQDYLLPFVEDSTIILIGATTENPYFEVNKALISRMYVFELKAHTDDDLKKLI 177

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
           D               +     R  +   + + D+A   +   S G  R     L  +  
Sbjct: 178 D---------------MALSRDRLLQNKNIKIDDDARNTLVKYSNGDCRALLNALE-IAI 221

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
           F++      I  +             +     D  Y               +TISA +  
Sbjct: 222 FSQEDKEGIIVVDRKSIINSIQKKISIYDRDGDRHY---------------DTISAFIKS 266

Query: 292 PRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
            R +  D    Y+ +        +   R ++  A + + +  P
Sbjct: 267 MRGSDPDAAVYYLAKMLNSGEDIKFISRRMIIFASEDISLADP 309


>gi|227495470|ref|ZP_03925786.1| crossover junction endodeoxyribonuclease ATPase [Actinomyces
           coleocanis DSM 15436]
 gi|226831017|gb|EEH63400.1| crossover junction endodeoxyribonuclease ATPase [Actinomyces
           coleocanis DSM 15436]
          Length = 444

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 85/354 (24%), Positives = 141/354 (39%), Gaps = 64/354 (18%)

Query: 1   MMDREGLLSRNVSQEDA---DISLLRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEAL 54
           M   E  ++  V++ +A     + +RP T+EE  GQ       S L+  +E A   A+A+
Sbjct: 1   MDIFESSVTPAVAESNAHAPLAARMRPTTVEELVGQQHLLTPGSPLRRLLEPADP-AKAV 59

Query: 55  DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------D 107
             V+  GPPG+GKTTLA +VAR  G +F   S  V +   ++  +++  +          
Sbjct: 60  SSVILWGPPGVGKTTLAYLVARSSGRHFAEVSA-VSSGVKEVRDVISEAKRHLATDGKET 118

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGL 165
           +LFIDE+HR S   ++ L PA+E+  + L+    E PS   +   LSR  L+        
Sbjct: 119 ILFIDEVHRFSKSQQDSLLPAVENRWVTLIAATTENPSFSVISPLLSRSILLTL------ 172

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA----KLTGLAVTDEAACEIAMR-SRGTPR 220
             NPL+D              D+  ++ R       L      +  A ++ +R +    R
Sbjct: 173 --NPLED-------------ADIAKLIHRALDDKRGLDNRVGINTGAEQMIIRLAGADAR 217

Query: 221 IAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV 280
            +  +L      A  A  K I  +    A     +     +  D+               
Sbjct: 218 RSLTILEAAAQTAIDAGRKEIDEDSVAKAADAALVRYGEDEHYDV--------------- 262

Query: 281 GIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
               ISA +   R +  D    Y+ +       PR   R +M  A + +G+  P
Sbjct: 263 ----ISAFIKSMRGSDVDAAMHYLARMLEAGEDPRFIARRIMICASEDVGMADP 312


>gi|255530100|ref|YP_003090472.1| AAA ATPase central domain-containing protein [Pedobacter heparinus
           DSM 2366]
 gi|255343084|gb|ACU02410.1| AAA ATPase central domain protein [Pedobacter heparinus DSM 2366]
          Length = 426

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 73/328 (22%), Positives = 120/328 (36%), Gaps = 49/328 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+ L+E+ GQ        V  +A ++    L  ++F GPPG+GKTTLA ++++
Sbjct: 6   PLAERMRPQNLDEYVGQQHLVGPDAVLRKAIQSGQ--LPSMIFWGPPGVGKTTLAYIISQ 63

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLT-NLEDRDVLFIDEIHRLSIIVEEILYPAME 130
            L   F + S        I    D AALL  +L    +LFIDEIHR S   ++ L  A+E
Sbjct: 64  TLDRPFFNLSAINSGVKDIRDVIDRAALLKDSLMGLPILFIDEIHRFSKSQQDSLLGAVE 123

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
              + L+    E PS   +   LSR  +           + L                 L
Sbjct: 124 RGLVTLIGATTENPSFEVISALLSRCQVYILKALNEEELSGL-----------------L 166

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +T +++   L    +T +    +   S G  R    +L    +             +   
Sbjct: 167 QTAIKQDVLLKEKKITIKEHEALIRLSGGDARKLLNVLEIAVNGIGGTKIVLTNENVLAH 226

Query: 249 ALL-RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           A       DK G    D+                   ISA +   R +  +    ++ + 
Sbjct: 227 AQQNLALYDKAGEQHYDI-------------------ISAFIKSIRGSDPNAAVYWLARM 267

Query: 308 GFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                 P    R L+ +A + +G   P+
Sbjct: 268 IEGGEDPLFIARRLLILASEDIGNANPN 295


>gi|256825082|ref|YP_003149042.1| Recombination protein MgsA [Kytococcus sedentarius DSM 20547]
 gi|256688475|gb|ACV06277.1| Recombination protein MgsA [Kytococcus sedentarius DSM 20547]
          Length = 499

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 88/343 (25%), Positives = 129/343 (37%), Gaps = 61/343 (17%)

Query: 14  QEDADISLLRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
            ++   + +RPR+LEE  GQ E     S L+  IE  +  A A    +  GPPG GKTTL
Sbjct: 27  PDEPLAARMRPRSLEEVVGQREVLAPGSPLRRLIEGRRGVAGA-SSAILWGPPGTGKTTL 85

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEE 123
           A++VA      F   S  V A   D+ A++            + VLF+DEIHR +   ++
Sbjct: 86  ARLVADGADRTFVQLSA-VTAGVKDVRAVMEAARRDKSMYGRQTVLFLDEIHRFTKAQQD 144

Query: 124 ILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
            L P +ED  + L+    E PS   V   LSR  L+            L DR  +     
Sbjct: 145 ALLPGVEDRTVILVAATTENPSFTVVTPLLSRSVLVRLAGLDRQDVRDLLDRAVVD---- 200

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF--------A 233
                      +RG       + DEAA  I   + G  R A   L              A
Sbjct: 201 -----------ERGLDG-RFRLEDEAADGIVQLAGGDGRRALTTLEAAAGAAESEVAPGA 248

Query: 234 EVAHAKTITREIADAALLR--LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
           E      +T    + AL +  +  D+ G    D+                    SA +  
Sbjct: 249 EGTGPVVVTTAHVEQALDQAVVGYDRDGDQHYDV-------------------TSAFIKS 289

Query: 292 PRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
            R +  D    Y+ +Q      PR   R ++  A + +G+  P
Sbjct: 290 MRGSDVDAALHYLARQIEAGEDPRFIARRVVIAASEDVGMADP 332


>gi|119945376|ref|YP_943056.1| recombination factor protein RarA [Psychromonas ingrahamii 37]
 gi|119863980|gb|ABM03457.1| Recombination protein MgsA [Psychromonas ingrahamii 37]
          Length = 442

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 65/327 (19%), Positives = 112/327 (34%), Gaps = 44/327 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP+    + GQ       K    A +    A   ++  GPPG GKTTLA+++A 
Sbjct: 13  PLAARMRPKFFSNYIGQAHIIGAGKPLRNALE--NGAAHSMILWGPPGTGKTTLAELIAS 70

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130
               +    S  V +   ++ A +   +       R +LF+DE+HR +   ++   P +E
Sbjct: 71  YCDAHVERLSA-VTSGIKEIRAAIEIAQQNRTNGIRTLLFVDEVHRFNKAQQDAFLPYIE 129

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           D  +  +    E PS       LSR        R+ LL    +      I      ++ L
Sbjct: 130 DGTILFIGATTENPSFELNNALLSR-------ARIYLLKKLSEAEIIAVIDQACSSVDGL 182

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
                       +    +   ++A   +G  R A   L  + D A  +          + 
Sbjct: 183 AN--------KNIQFVGDVKEKLAQLVQGDARKALNYLELLADMAIDSEQSL----SINL 230

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            LL+    + G                  G +  + ISA     R +  D    +  +  
Sbjct: 231 DLLKEIAGREG------------VSFDKKGDLFYDLISAFHKSVRGSDPDAALYWYARML 278

Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIPH 333
                P    R L+ IA + +G   P 
Sbjct: 279 AGGCDPLYVARRLLAIASEDIGNADPR 305


>gi|259046674|ref|ZP_05737075.1| ATPase, AAA family domain protein [Granulicatella adiacens ATCC
           49175]
 gi|259036839|gb|EEW38094.1| ATPase, AAA family domain protein [Granulicatella adiacens ATCC
           49175]
          Length = 423

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 79/324 (24%), Positives = 127/324 (39%), Gaps = 41/324 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RPRT+EE  GQ    S  K+      A+   L  ++  GPPG GKT++A  ++ 
Sbjct: 5   PLAYRMRPRTIEEVIGQEHLVSPGKIINRMVVAKQ--LSSMILYGPPGTGKTSIASAISG 62

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
              V+FR  +     K    + A    +    +L +DEIHRL    ++ L P +E+ ++ 
Sbjct: 63  STKVSFRQLNAATDTKKDLQIVAEEAKMSGSVILLLDEIHRLDKTKQDFLLPHIENGRII 122

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           L+    E P         SR  +            PL     I   +N  E E      +
Sbjct: 123 LVGATTENPYISINPAIRSRTQIFEL--------KPLSPEDIIKALVNAIEDE------E 168

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT--ITREIADAALL 251
           RG     L V++EA    A  + G  R A   L       E        IT +IA+  + 
Sbjct: 169 RGLGKLDLDVSEEALNHFASSTNGDVRSALNALELAAKSTEPGEDGIIHITIQIAEECIQ 228

Query: 252 RLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           R A   DK G    D+  ++ + ++  G  V              A+       +I+ G 
Sbjct: 229 RKALSYDKDGDHHYDV--ISALQKSIRGSDV------------NAALHYAAR--LIEAGD 272

Query: 310 IQRTPRGRLLMPIAWQHLGIDIPH 333
           +  T   R L+ I+++ +G+  P 
Sbjct: 273 L--TSLMRRLLVISYEDIGLGNPQ 294


>gi|261418417|ref|YP_003252099.1| recombination factor protein RarA [Geobacillus sp. Y412MC61]
 gi|319767623|ref|YP_004133124.1| ATPase AAA [Geobacillus sp. Y412MC52]
 gi|261374874|gb|ACX77617.1| AAA ATPase central domain protein [Geobacillus sp. Y412MC61]
 gi|317112489|gb|ADU94981.1| AAA ATPase central domain protein [Geobacillus sp. Y412MC52]
          Length = 431

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 70/327 (21%), Positives = 115/327 (35%), Gaps = 47/327 (14%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +     +RPRT++E  GQ           +  K     +  +L  G PG GKT+LA  +A
Sbjct: 6   EPLAWRMRPRTIDEIVGQQHIIGPSTPLYKMVKKGH--VPSLLLYGEPGTGKTSLAYAIA 63

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           R  G  + + +    A   ++   +         +LFIDEIHRL+   +++L P +E   
Sbjct: 64  RTAGREWVAINA-TTAGKKEIEEAVEAARWSGNVLLFIDEIHRLNKAQQDVLLPHLESGL 122

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + L+    E P         SR   I        L     D   I ++    + E     
Sbjct: 123 VTLIGATTENPFHEVNPAIRSRCGQI------QQLKPLKPDDLLIILKRALADPE----- 171

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
             RG     + + +     IA  + G  R+A  LL      A+  H      E   A+  
Sbjct: 172 --RGVGEPPVVIDESLLWRIAEAAGGDARVALSLLEAAVAAADERHGCLYIDEDIVASCT 229

Query: 252 RLA---IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ- 307
                  DK G        L+   ++  G  V                 D    Y+ +  
Sbjct: 230 ANRGFTHDKYGDHYYS--LLSAFQKSVRGSDV-----------------DAALHYLARLL 270

Query: 308 --GFIQRTPRGRLLMPIAWQHLGIDIP 332
             G +      R L+ +A++ +G+  P
Sbjct: 271 EGGDLAAVC--RRLLVMAYEDIGLANP 295


>gi|306836214|ref|ZP_07469198.1| replication-associated recombination protein A [Corynebacterium
           accolens ATCC 49726]
 gi|304567935|gb|EFM43516.1| replication-associated recombination protein A [Corynebacterium
           accolens ATCC 49726]
          Length = 461

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 78/326 (23%), Positives = 122/326 (37%), Gaps = 47/326 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP+TLEE  GQ       K      +   EA   V+  GPPG GKTT+A ++A 
Sbjct: 39  PLAARMRPQTLEEVVGQDHLLGPGKPLRRLVEGSGEA--SVILYGPPGTGKTTIASLIAS 96

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAME 130
           ++G NF   S  + +    +  ++T+         R VLFIDE+HR S   ++ L  A+E
Sbjct: 97  QMGQNFVGLSA-LDSGVKQVREVITHARQELIHGRRTVLFIDEVHRFSKTQQDALLAAVE 155

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +  + L+    E PS   V   LSR  L+   +                       +   
Sbjct: 156 NRTVLLVAATTENPSFSVVSPLLSRSLLLQLHSLSEADLK---------------GVARR 200

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
                RG     L +TDEA  ++ + S G  R +   L    +  +     T T    + 
Sbjct: 201 ALDSDRGLGERDLTITDEALNQLVVLSGGDARRSLTYLEAAAEAVDDGGEITATTITDNV 260

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
               +  D+ G    D+                    SA +   R +  D    Y+ +  
Sbjct: 261 NRAVVRYDRDGDQHYDV-------------------TSAFIKSIRGSDVDAALHYLARMV 301

Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIP 332
                PR   R LM  A + +G+  P
Sbjct: 302 EAGEDPRFIARRLMVHASEDVGMADP 327


>gi|224045116|ref|XP_002197546.1| PREDICTED: Werner helicase interacting protein 1 [Taeniopygia
           guttata]
          Length = 632

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 69/342 (20%), Positives = 120/342 (35%), Gaps = 39/342 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
                LRP TL  + GQ         L+  +E+       +  ++  GPPG GKTTLA +
Sbjct: 191 PLAERLRPDTLGSYVGQERVLGAQTLLRSLLES-----HEIPSLILWGPPGCGKTTLAHI 245

Query: 74  VARELGVN--FRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEI 124
           +A     N     T     AK  D+  +++  +        + +LFIDEIHR +   ++ 
Sbjct: 246 IANSSKKNGMRFVTLSATSAKTNDVRDVISQAQNEKRLFKRKTILFIDEIHRFNKSQQDT 305

Query: 125 LYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR----FGIPI 178
             P +E   + L+    E PS +     LSR  +I            +  R     G+ +
Sbjct: 306 FLPHVECGTVTLIGATTENPSFQVNAALLSRCRVIVLEKLSAEAMEAILMRAVRFLGLQV 365

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
                +     T     +    + + ++A   +A    G  R     L+     A +A  
Sbjct: 366 LGQGDQHGTPATGSGSKSSELPVYIEEKALNTLAYLCDGDARTGLNGLQLAVQ-ARIAVG 424

Query: 239 KTITREIADAA------LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEP 292
           +T               L+     K G  +  + Y      ++         ISA     
Sbjct: 425 RTTPLNTTAKGGAADGILVTEEHVKEGLQRSHILYDRAGEEHYNC-------ISALHKSM 477

Query: 293 RDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           R + E+    ++ +       P    R L+  A + +G+  P
Sbjct: 478 RGSDENASLYWLARMLEGGEDPLYVARRLVRFASEDIGLADP 519


>gi|227503535|ref|ZP_03933584.1| crossover junction endodeoxyribonuclease ATPase [Corynebacterium
           accolens ATCC 49725]
 gi|227075571|gb|EEI13534.1| crossover junction endodeoxyribonuclease ATPase [Corynebacterium
           accolens ATCC 49725]
          Length = 461

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 78/326 (23%), Positives = 123/326 (37%), Gaps = 47/326 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP+TLEE  GQ    +  K      +   EA   V+  GPPG GKTT+A ++A 
Sbjct: 39  PLAARMRPQTLEEVVGQDHLLAPGKPLRRLVEGSGEA--SVILYGPPGTGKTTIASLIAS 96

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAME 130
           ++G NF   S  + +    +  ++T+         R VLFIDE+HR S   ++ L  A+E
Sbjct: 97  QMGQNFVGLSA-LDSGVKQVREVITHARQELIHGRRTVLFIDEVHRFSKTQQDALLAAVE 155

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +  + L+    E PS   V   LSR  L+   +                       +   
Sbjct: 156 NRTVLLVAATTENPSFSVVSPLLSRSLLLQLHSLSEADLK---------------GVARR 200

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
                RG     L +TDEA  ++ + S G  R +   L    +  +     T T    + 
Sbjct: 201 ALDSDRGLGERDLTITDEALNQLVVLSGGDARRSLTYLEAAAEAVDDGGEITATTITDNV 260

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
               +  D+ G    D+                    SA +   R +  D    Y+ +  
Sbjct: 261 NRAVVRYDRDGDQHYDV-------------------TSAFIKSIRGSDVDAALHYLARMV 301

Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIP 332
                PR   R LM  A + +G+  P
Sbjct: 302 EAGEDPRFIARRLMVHASEDIGMADP 327


>gi|148927772|ref|ZP_01811204.1| AAA ATPase, central domain protein [candidate division TM7
           genomosp. GTL1]
 gi|147886884|gb|EDK72422.1| AAA ATPase, central domain protein [candidate division TM7
           genomosp. GTL1]
          Length = 390

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 80/330 (24%), Positives = 127/330 (38%), Gaps = 60/330 (18%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           Q+      +RP+TL +  GQ +     ++     K +      ++  GPPG GKTTLA++
Sbjct: 2   QDIPLAERMRPQTLTDVIGQRQLLGENQILRHIVKNKQPV--SLILWGPPGSGKTTLARI 59

Query: 74  VARELGVNFRSTSGPVIAKA-----GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           +A+E+  +F   S     KA      + A    NL+ R +LF+DEIHR +   ++   P 
Sbjct: 60  IAKEVEADFIELSAVTAGKADITQVVERARQNRNLKMRTILFVDEIHRFNKAQQDAFLPH 119

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           +E   + L+    E PS   +   LSR  ++                          + E
Sbjct: 120 VESGLITLIGATTENPSFEVITPLLSRSRVLVL---------------------EPLDKE 158

Query: 187 DLKTIVQRGAKLTGLA--VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           D+ TI+++  K       VT +A   +A  S G  RIA   L    D AE      IT E
Sbjct: 159 DITTIIKKSLKKLKATKRVTPKALEYLAELSSGDARIALGNLELALDMAE-----KITPE 213

Query: 245 IADAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           I   A  +     DK G                         ISA +   R +  D    
Sbjct: 214 IVKKAAQKRVPGYDKAGEMHY-------------------NVISAFIKSMRGSNTDATLY 254

Query: 303 YMIQQGFIQRTPR--GRLLMPIAWQHLGID 330
           Y+ +       P+   R ++  A + +G+ 
Sbjct: 255 YLARMIESGEDPKFIARRMVIFASEDIGLA 284


>gi|229827568|ref|ZP_04453637.1| hypothetical protein GCWU000182_02957 [Abiotrophia defectiva ATCC
           49176]
 gi|229788206|gb|EEP24320.1| hypothetical protein GCWU000182_02957 [Abiotrophia defectiva ATCC
           49176]
          Length = 437

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 77/333 (23%), Positives = 122/333 (36%), Gaps = 60/333 (18%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP     F GQ       K+     +   + +  ++F GPPG+GKTTLA ++A 
Sbjct: 15  PLADRLRPEEFSAFAGQEHLIGEGKLLRRLIE--NDNITSMIFWGPPGVGKTTLAGIIAA 72

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130
           +    F + S  V +   ++  ++    +      R VLF+DEIHR +   ++   P +E
Sbjct: 73  KTHSEFINFSA-VTSGIKEIKEVMAKAGETRKLGMRTVLFVDEIHRFNKAQQDAFLPFVE 131

Query: 131 DFQLDLM--VGEGPSARSVKINLSR---FTLIAATT--RVGLLTNPLQDRFGIPIRLNFY 183
              + L+    E PS       LSR   F L   TT     LLT  L+D+ G        
Sbjct: 132 RGSIILIGATTENPSFEINAALLSRCKVFVLKQLTTEDIAKLLTRALKDKKGF------- 184

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
                         +  + + DE    IA+ S G  R A   L    +  E    KTI  
Sbjct: 185 -------------GMLNVEIADELVHAIALFSNGDARTALNTLEMAINNGEFTKEKTIVT 231

Query: 244 EIADA---ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +           L  DK G +  +L                   ISA     R++  D  
Sbjct: 232 KEIVEQCTGKKALLYDKNGEEHYNL-------------------ISALHKSMRNSDPDAA 272

Query: 301 EPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
             ++++       P    R ++  A + +G+  
Sbjct: 273 IYWLVRMLEAGEEPLYIARRVIRFASEDVGLAD 305


>gi|163760830|ref|ZP_02167909.1| hypothetical protein HPDFL43_06787 [Hoeflea phototrophica DFL-43]
 gi|162281874|gb|EDQ32166.1| hypothetical protein HPDFL43_06787 [Hoeflea phototrophica DFL-43]
          Length = 436

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 76/335 (22%), Positives = 116/335 (34%), Gaps = 51/335 (15%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           S            LRP TL E TGQ                 + +L  ++F GPPG GKT
Sbjct: 8   SAETQANRPLADRLRPATLAEVTGQPHLTGPDGAITRMI--ASGSLGSMIFWGPPGTGKT 65

Query: 69  TLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           T+A+++A E  + F   S        + K  + A        + +LF+DEIHR +   ++
Sbjct: 66  TVARLLAGETDLAFDQISAIFSGVADLKKVFETARARRMGGRQTLLFVDEIHRFNRAQQD 125

Query: 124 ILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
              P MED  + L+    E PS       LSR  ++   +                    
Sbjct: 126 SFLPVMEDGTIVLVGATTENPSFELNAALLSRARVLTFRS-------------------- 165

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
            ++ E L++++ R               E   R+    R+A    R V   AE       
Sbjct: 166 -HDEESLESLLVRA----EADTGKPLPLEPEARASLL-RMADGDGRAVLTLAEEVWRAAR 219

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVG-IETISAGLSEPRDAIEDLI 300
             E  D A L   + +              A  +  G  G    ISA     R +  D  
Sbjct: 220 EGESFDTAALVEVVQRR-------------APVYDKGQDGHYNLISALHKAVRGSDPDAA 266

Query: 301 EPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
             Y+ +       P   GR L+ +A + +G   P 
Sbjct: 267 LYYLARMFDAGEDPLFLGRRLVRMASEDIGNADPQ 301


>gi|27380478|ref|NP_772007.1| recombination factor protein RarA [Bradyrhizobium japonicum USDA
           110]
 gi|27353642|dbj|BAC50632.1| bll5367 [Bradyrhizobium japonicum USDA 110]
          Length = 445

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 72/324 (22%), Positives = 112/324 (34%), Gaps = 53/324 (16%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            LRPR L E  GQ              + R   L  ++F GPPG GKTT+A+++A    +
Sbjct: 29  RLRPRALSEVVGQDHILGPDGALTRMLETR--TLGSLVFWGPPGTGKTTVARLLADATDL 86

Query: 81  NFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           +F   S        + KA D A     +    +LF+DE+HR +   ++   P MED  + 
Sbjct: 87  HFEQISAVFSGVADLKKAFDAARARREMGKGTLLFVDEVHRFNRAQQDSFLPVMEDGTVV 146

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           ++    E PS       LSR  ++   +        L          +  E+E  K    
Sbjct: 147 MVGATTENPSFELNAALLSRARVLVFRSLDAAAIEKL--------FAHAEEVEGKK---- 194

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
                  L +  EA   +   + G  R +  L   V   A     +          L R 
Sbjct: 195 -------LPLDAEARAVLVRMADGDGRASLTLAEEVWRSARA--DEIFNAAQLQDILQRR 245

Query: 254 A--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
           A   DK      +L                   ISA     R +  D    Y+ +     
Sbjct: 246 APIYDKSADGHYNL-------------------ISALHKSVRGSDPDAALYYLARMLDAG 286

Query: 312 RTP--RGRLLMPIAWQHLGIDIPH 333
             P    R ++ +A + +G+  P 
Sbjct: 287 EDPLFLARRVVRMAVEDIGLADPQ 310


>gi|296162943|ref|ZP_06845721.1| AAA ATPase central domain protein [Burkholderia sp. Ch1-1]
 gi|295886797|gb|EFG66637.1| AAA ATPase central domain protein [Burkholderia sp. Ch1-1]
          Length = 437

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 73/334 (21%), Positives = 117/334 (35%), Gaps = 53/334 (15%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
               +     LLRP+TL+EF GQ       K    A +A    L   +  GPPG+GKTTL
Sbjct: 6   TTKPKPPLAELLRPKTLDEFVGQRHLLGPGKPLRLAFEA--GKLHSFILWGPPGVGKTTL 63

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLA-------ALLTNLEDRDVLFIDEIHRLSIIVEE 123
            ++ A      F + S  V+A   D+        A L N     VLF+DEIHR +   ++
Sbjct: 64  GRLAASATDSRFIAISA-VLAGVKDIRQAIDEAQAELDNHGRSTVLFVDEIHRFNKAQQD 122

Query: 124 ILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
            L P +E   L L+    E P        L+R  +                         
Sbjct: 123 ALLPHVESGLLTLVGGTTEHPGLAVNSALLARAQVYTL---------------------E 161

Query: 182 FYEIEDLKTIVQRGAKLTG-LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
               ++L  + +R       + +  +A   +   + G  R    LL +V + A  A    
Sbjct: 162 PLSSDELNQLYERALPHLQGVTLDADALDLLRGFADGDGRRFLNLLEQVTNAASGAGKTV 221

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +  E A  +                     + R   GG      +SA     R +  D  
Sbjct: 222 VDGEFARLSTS-----------------PSLRRFDKGGDEFYWQLSAFHKSLRGSDPDAA 264

Query: 301 EPYMIQQ--GFIQRTPRGRLLMPIAWQHLGIDIP 332
             ++ +   G    +   R ++ +A + +G   P
Sbjct: 265 LYWLARILDGSGDVSQVTRRMVVMASEDIGNADP 298


>gi|34540836|ref|NP_905315.1| recombination factor protein RarA [Porphyromonas gingivalis W83]
 gi|188995064|ref|YP_001929316.1| recombination factor protein RarA [Porphyromonas gingivalis ATCC
           33277]
 gi|34397150|gb|AAQ66214.1| ATPase, AAA family [Porphyromonas gingivalis W83]
 gi|188594744|dbj|BAG33719.1| ATPase AAA family [Porphyromonas gingivalis ATCC 33277]
          Length = 434

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 68/331 (20%), Positives = 118/331 (35%), Gaps = 52/331 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+TL ++ GQ     +  V  +  +        ++  GPPG+GKTTLA+++A 
Sbjct: 5   PLAERMRPKTLADYVGQQHLIGSGAVLRQMIEQGQT--PSMILWGPPGVGKTTLAEIIAH 62

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE----------DRDVLFIDEIHRLSIIVEEILY 126
           E+   F + S  V +   ++  ++ ++E           R +LFIDEIHR S   ++ L 
Sbjct: 63  EVDAPFYTLSA-VSSGVKEVREVIADIESNRGNLFDKGGRAILFIDEIHRFSKSQQDSLL 121

Query: 127 PAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
            A+E   + L+    E PS   ++  LSR  +     +                      
Sbjct: 122 AAVERGIVTLIGATTENPSFEVIRPLLSRCQVYVLKPQ---------------------S 160

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            EDL  +  R      L        E             R L  + D    +  +     
Sbjct: 161 DEDLLLLAHRAIDRDELLAAKHPVLEETEALLLYAGGDARKLLNILDLLATSEVEDRLVI 220

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
             +    RL  +   FD               GG +  +  SA +   R +  D    ++
Sbjct: 221 TNEKIRQRLQENPAAFD--------------KGGELHYDIASAFIKSIRGSDPDAAIYWL 266

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +       P    R L+  A + +G+  P+
Sbjct: 267 ARLIDGGEEPSFIARRLIISASEDIGLANPN 297


>gi|256826951|ref|YP_003150910.1| Recombination protein MgsA [Cryptobacterium curtum DSM 15641]
 gi|256583094|gb|ACU94228.1| Recombination protein MgsA [Cryptobacterium curtum DSM 15641]
          Length = 435

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 78/352 (22%), Positives = 127/352 (36%), Gaps = 62/352 (17%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M      + +   ++ A ++  +RPR+L++  GQ EA         A  A  ++L  V+ 
Sbjct: 1   MDTLFTEMEQEAKRKAAPLAVRMRPRSLDDLLGQQEAIGPGSWLHAAIAA--DSLSSVIL 58

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFID 112
            GP G GKT++A ++A      F   S  +     DL   +   E R        +LF+D
Sbjct: 59  YGPAGTGKTSIAHIIAESTKAEFVEVSA-IGGTVSDLRREIAAAEKRLTSHGMRTILFVD 117

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           EIHR +   ++ L  A+ED  + L+    E P        LSR  ++  T+         
Sbjct: 118 EIHRFNRSQQDALLHAVEDRVVVLVGATTENPFFEVNSALLSRSRIVELTS--------- 168

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTG-----LAVTDEAACEIAMRSRGTPRIAGRL 225
                          E++ ++VQR            ++ DEA   I   S G  R A   
Sbjct: 169 ------------LSDEEIASVVQRALVDERGLAGAYSLDDEALDAIMQVSGGDARSALTT 216

Query: 226 LRRVRDFAEVAHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIE 283
           L    D A       IT  +   A+   A   DK      D+                  
Sbjct: 217 LELACDMARAEDTHAITAAMVKKAVPHRAVPYDKNKDMHYDI------------------ 258

Query: 284 TISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +SA +   R +  D    ++ +       PR   R ++  A + +G   P 
Sbjct: 259 -VSAFIKSMRGSDPDAALYWLARMIDGGEDPRFIARRILIAASEDVGNADPQ 309


>gi|134095226|ref|YP_001100301.1| recombination factor protein RarA [Herminiimonas arsenicoxydans]
 gi|133739129|emb|CAL62178.1| ATPase, AAA family protein [Herminiimonas arsenicoxydans]
          Length = 437

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 74/334 (22%), Positives = 118/334 (35%), Gaps = 53/334 (15%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
               +     LLRP+TL+EF GQ       K    A +A    L   +  GPPG+GKTTL
Sbjct: 6   TTKPKPPLAELLRPKTLDEFVGQRHLLGPGKPLRLAFEA--GKLHSFILWGPPGVGKTTL 63

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLA-------ALLTNLEDRDVLFIDEIHRLSIIVEE 123
            ++ A      F + S  V+A   D+        A L N     VLF+DEIHR +   ++
Sbjct: 64  GRLAASATDSRFIAISA-VLAGVKDIRQAIDEAQAELDNHGRSTVLFVDEIHRFNKAQQD 122

Query: 124 ILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
            L P +E   L L+    E P        LSR  +                         
Sbjct: 123 ALLPHVESGLLTLVGGTTEHPGLAVNSALLSRAQVYTL---------------------E 161

Query: 182 FYEIEDLKTIVQRGAKLTG-LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
               ++L  + +R       + +  +A   +   + G  R    LL +V + A  + A  
Sbjct: 162 PLSSDELNQLYERALPHLQGVTLDADALDLLKGFADGDGRRFLNLLEQVTNAA--SGAGK 219

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +  +   A L                    + R   GG      +SA     R +  D  
Sbjct: 220 VVVDGQSAKLSTSP---------------SLRRFDKGGDEFYWQLSAFHKSLRGSDPDAA 264

Query: 301 EPYMIQQ--GFIQRTPRGRLLMPIAWQHLGIDIP 332
             ++ +   G    +   R ++ +A + +G   P
Sbjct: 265 LYWLARILDGSGDVSQVTRRMVVVASEDIGNADP 298


>gi|298372246|ref|ZP_06982236.1| ATPase, AAA family [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275150|gb|EFI16701.1| ATPase, AAA family [Bacteroidetes oral taxon 274 str. F0058]
          Length = 421

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 69/330 (20%), Positives = 124/330 (37%), Gaps = 53/330 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP++L+ F GQ    ++  V     ++    +   +  GPPG+GKTTLA+++A 
Sbjct: 3   PLAERLRPQSLDTFVGQRHLLADGAVLRSMIESGN--ISSFILWGPPGVGKTTLAKIIAN 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAM 129
            L   F + S  V +   D+  ++   +          +LFIDEIHR S   ++ L  A+
Sbjct: 61  RLQRPFYTLSA-VTSGVKDVREVIEKAKQNRFFNSAPPILFIDEIHRFSKSQQDSLLGAV 119

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E     L+    E PS   +   LSR  +             L D          Y +++
Sbjct: 120 ETGIFTLIGATTENPSFEVITPLLSRCQVYVFRPLERSDMEALVD----------YALKN 169

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
              + QR  ++            +   + G  R    +L  + + A+      I  ++ +
Sbjct: 170 DTELRQRTIEIAENEA-------MLRYAGGDARKLLNILELIVN-AQSEGTIVIENKLVE 221

Query: 248 AALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
             L +   A DK G    D+                   ISA +   R +  D    ++ 
Sbjct: 222 DRLQQNPLAYDKDGEMHYDI-------------------ISAFIKSVRGSDPDAAVYWLA 262

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +        +   R L+ +A + +G+  P+
Sbjct: 263 RMIAGGEDVKFIARRLIILAAEDIGLANPN 292


>gi|162456465|ref|YP_001618832.1| recombination factor protein RarA [Sorangium cellulosum 'So ce 56']
 gi|161167047|emb|CAN98352.1| ATPase [Sorangium cellulosum 'So ce 56']
          Length = 460

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 84/351 (23%), Positives = 127/351 (36%), Gaps = 61/351 (17%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           + D        +         +RPR+LE+  GQ       K+   A  A  + +  ++  
Sbjct: 21  LFDAARQREPELKATVPLAERMRPRSLEDMIGQGHLLGEGKLLARAIAA--DRIPSMILW 78

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDE 113
           GPPG GKTTLA+VVA      F   +  V+    +L  +L            R +LF+DE
Sbjct: 79  GPPGAGKTTLARVVAHTTNARFVPFNA-VLGGVPELREILAQARAARSYEGKRTILFVDE 137

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTL-----IAATTRVGLL 166
           IHR +   ++   P +ED  + L+    E PS       LSR  +     + A+  V LL
Sbjct: 138 IHRFNKAQQDAFLPHVEDGTITLIGATTENPSFAVNAPLLSRCKVFRLQGLGASELVELL 197

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
              L+   G+   +                        D+A   IA  ++G  R A   L
Sbjct: 198 RRALESPAGLAGAIA---------------------ADDDALSAIAALAQGDARRALTTL 236

Query: 227 RRVRDFAEVAHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIET 284
               D A  A A TITRE+   A        DK G +                       
Sbjct: 237 EIAADEAGRAGAPTITRELIAGASEHKTLLYDKAGEEHY-------------------NV 277

Query: 285 ISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRG--RLLMPIAWQHLGIDIPH 333
           ISA +   R +  D    ++++       P    R +M  A + +G   P 
Sbjct: 278 ISAFIKSMRGSDPDAAIYWLMRMIEAGDDPLFLLRRMMIFASEDIGNADPR 328


>gi|86135798|ref|ZP_01054377.1| ATPase, AAA family protein [Roseobacter sp. MED193]
 gi|85826672|gb|EAQ46868.1| ATPase, AAA family protein [Roseobacter sp. MED193]
          Length = 439

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 80/346 (23%), Positives = 133/346 (38%), Gaps = 56/346 (16%)

Query: 1   MMDREGLLSRNVSQE--DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           + D +        +E        LRPR+L E  GQ +               + +L  ++
Sbjct: 4   LFDSDATPEAQPPKEVNRPLADRLRPRSLSEVIGQAQVLGEEAPL--GVMLSSGSLSSLI 61

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDE 113
           F GPPG+GKTT+A+++A+E  ++F   S      P + K  + A +        +LF+DE
Sbjct: 62  FWGPPGVGKTTIARLLAQETDLHFVQISAIFTGVPDLRKVFEAAKIRRQNGQGTLLFVDE 121

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++   P MED  + L+    E PS       LSR  ++              
Sbjct: 122 IHRFNKAQQDGFLPYMEDGTILLVGATTENPSFELNAAVLSRSQVL-------------- 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
               +  RL+  ++E L    +R      L ++ EA   +   + G  R    L+ +V  
Sbjct: 168 ----VLERLSLVDLELLTQRAERELGK-ALPLSGEARDALHEMADGDGRTLLNLIEQV-- 220

Query: 232 FAEVAHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGL 289
            A    A  + RE     L+R A   DK G +  +L                   ISA  
Sbjct: 221 -AAWRVATPLGREALATRLMRRAAKYDKSGDEHYNL-------------------ISALH 260

Query: 290 SEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
              R +  D    ++ +       PR   R L  ++ + +G+  P 
Sbjct: 261 KSIRGSDPDAALYWLGRMLEGGEDPRFLARRLTMMSTEDIGLADPQ 306


>gi|255325072|ref|ZP_05366178.1| recombination factor protein RarA [Corynebacterium
           tuberculostearicum SK141]
 gi|255297637|gb|EET76948.1| recombination factor protein RarA [Corynebacterium
           tuberculostearicum SK141]
          Length = 547

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 72/326 (22%), Positives = 123/326 (37%), Gaps = 47/326 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP+ L+E  GQ    +  K      +   EA   V+  GPPG GKTT+A ++A 
Sbjct: 116 PLAARMRPQNLDEVVGQDHLLAPGKPLRRLVEGSGEA--SVILYGPPGTGKTTIASLIAS 173

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAME 130
           ++G NF   S  + +    +  ++T+         R VLFIDE+HR S   ++ L  A+E
Sbjct: 174 QMGQNFVGLSA-LDSGVKQVREVITHARQELIHGRRTVLFIDEVHRFSKTQQDALLAAVE 232

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +  + L+    E PS   V            +  + L  + L D     +     E +  
Sbjct: 233 NRTVLLVAATTENPSFSVVAP--------LLSRSLLLQLHSLSDDDLRGVAKRALESD-- 282

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
                RG     + +TDEA  ++ + + G  R     L    +  +     T      + 
Sbjct: 283 -----RGLGERKIRITDEALDQLVLLAGGDARRTLTYLEAAAEAVDDGGEITPQTVTDNV 337

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
               +  D+ G    D+                   +SA +   R +  D    Y+ +  
Sbjct: 338 NKAVVRYDRDGDQHYDV-------------------VSAFIKSIRGSDVDAALHYLARMV 378

Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIP 332
                PR   R L+  A + +G+  P
Sbjct: 379 EAGEDPRFIARRLIVHASEDIGMADP 404


>gi|309810782|ref|ZP_07704588.1| recombination factor protein RarA [Dermacoccus sp. Ellin185]
 gi|308435262|gb|EFP59088.1| recombination factor protein RarA [Dermacoccus sp. Ellin185]
          Length = 457

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 79/339 (23%), Positives = 120/339 (35%), Gaps = 51/339 (15%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEA--LDHVLFVGPPGLG 66
           S   S        +RPRTLEE  GQ E            + +A A      +  GPPG G
Sbjct: 18  SAGASAMAPLAVRMRPRTLEEVRGQGEVLKPGSPLRRLIEGQAGAAGPMSAILWGPPGTG 77

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSI 119
           KTTLA + A      F   S  + A   D+   +              VLF+DEIHR S 
Sbjct: 78  KTTLAHLAANSAERRFVELSA-ITAGVKDVRQAMEEAGRHLAMYGRSTVLFLDEIHRFSK 136

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             ++ L P +E+  + L+    E PS   +   LSR  L+  T+                
Sbjct: 137 AQQDALLPGVENRTVILVAATTENPSFSVIAPLLSRSVLVTLTSL--------------- 181

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                 ++     + +RG       + D+A   +   + G  R A   L      A  A 
Sbjct: 182 DDAQIADVIGAALVDERGLDE-RFTLDDDARDHLVRMAGGDARRALTALEAGAGVATDAG 240

Query: 238 AKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDA 295
            KTIT    + A+   A   D+ G    D+   + + ++  G  V               
Sbjct: 241 EKTITLAHVEQAMAAAAVRYDRAGDQHYDVA--SALIKSMRGSDV--------------- 283

Query: 296 IEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
             D    Y+ +       PR   R ++  A + +G+  P
Sbjct: 284 --DAALHYLARMLEAGEDPRFIARRIVIAASEDVGMADP 320


>gi|121602885|ref|YP_989024.1| recombination factor protein RarA [Bartonella bacilliformis KC583]
 gi|120615062|gb|ABM45663.1| ATPase, AAA family protein [Bartonella bacilliformis KC583]
          Length = 439

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 75/335 (22%), Positives = 121/335 (36%), Gaps = 57/335 (17%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
            +Q       +RP +L E  GQ               A   +L  ++F G PG GKTT+A
Sbjct: 14  ANQSRPLAEKMRPCSLSEVVGQSHLIGAEGFLSRMVAA--GSLGSMIFWGAPGTGKTTVA 71

Query: 72  QVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           +++A E    F   S        + K  ++A        + +LF+DEIHR +   ++I  
Sbjct: 72  RLLALETNFAFEQVSAIFTGITELKKVFEVARARFMSGAKTLLFVDEIHRFNRAQQDIFL 131

Query: 127 PAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           P MED  + L+    E PS       LSR  ++   T                     ++
Sbjct: 132 PFMEDGTVVLVGATTENPSFALNAALLSRARVLTFHT---------------------HD 170

Query: 185 IEDLKTIVQRGAKLTG--LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            E L+ +++R  +L    L + D A   +   S G  R    L+  +  +      + + 
Sbjct: 171 DESLRRLLKRAEELERKTLPLDDHAKDVLIRISDGDARAMLTLVEEI--WCITRSGEILN 228

Query: 243 REIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
            E     + R A   DK      +L                   ISA     R +  D  
Sbjct: 229 AEALQEVVQRRAPIYDKGRDSHYNL-------------------ISALHKSVRGSDPDAA 269

Query: 301 EPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
             Y+ +       P   GR L+ IA + +G+  P 
Sbjct: 270 LYYLARMFDAGEDPLYIGRRLVRIAVEDIGLADPQ 304


>gi|332025898|gb|EGI66054.1| ATPase WRNIP1 [Acromyrmex echinatior]
          Length = 552

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 64/352 (18%), Positives = 118/352 (33%), Gaps = 44/352 (12%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           ++      +RP +L  F GQ        +  E  +     + +++  GPPG GKT+LA V
Sbjct: 101 RDVPLAEQMRPTSLLNFVGQRHILGPRTILSELLQKGE--IPNMILWGPPGCGKTSLANV 158

Query: 74  VARELGVNFRSTS-----GPVIAKAGDLAALL------TNLEDRDVLFIDEIHRLSIIVE 122
           +A     +             +A   ++  ++             ++F+DEIHR + + +
Sbjct: 159 IAHMCKNDASRKLRYVKLSAAMAGVQEVKEVISIASNHAKYAQHTIVFMDEIHRFNKMQQ 218

Query: 123 EILYPAMEDFQLDLM--VGEGPSARSVKINLSRFT-----LIAATTRVGLLTNPLQDRFG 175
           ++  P +E   + L+    E PS       LSR        ++    + +L   +    G
Sbjct: 219 DVFLPHVESGIITLIGATTENPSFSLNSALLSRCRVIVLHKLSIANLLLILKRAVISLGG 278

Query: 176 IPIRL------------NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAG 223
           I                    +E  K I    +  T   + +     +A    G  RIA 
Sbjct: 279 IIHAFPNKSESTLQDIGEEDTLEKNKVIEMESSCNTKFIIDEPTIEWLAETCDGDARIAL 338

Query: 224 RLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIE 283
             L            + +    A   L      K    +  + Y          G    +
Sbjct: 339 GGLEMAVRCKAPNEKEFLDVGPAIITLD---DIKESLKKTHMLY-------DKKGEQHYD 388

Query: 284 TISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           TISA     R + E+    ++ +       P    R L+ +A + +G+  P 
Sbjct: 389 TISALHKSVRASDENASLYWLTRMIAGGEDPVYIARRLVRMASEDIGLADPK 440


>gi|283779444|ref|YP_003370199.1| ATPase AAA [Pirellula staleyi DSM 6068]
 gi|283437897|gb|ADB16339.1| AAA ATPase central domain protein [Pirellula staleyi DSM 6068]
          Length = 441

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 86/341 (25%), Positives = 128/341 (37%), Gaps = 60/341 (17%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           N+ +     + +RP+ LEEF GQ       K+     KA  + L  VLF GPPG GKTTL
Sbjct: 11  NLKRAQPLAARMRPQRLEEFAGQQHFLGEGKLLRRLLKA--DRLGSVLFYGPPGCGKTTL 68

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEE 123
           A+++A      F   S  V +   +L  +L    D       R +LF+DEIHR S   ++
Sbjct: 69  ARLLAVASKRRFVQLSA-VTSGVKELREMLEKARDELSTGGFRTLLFVDEIHRYSKSQQD 127

Query: 124 ILYPAMEDFQLDLM--VGEGPSARSVKINLSR-----FTLIAATTRVGLLTNPLQDRFGI 176
            L P +E+  + L+      P        +SR     F  ++      LL   L DR   
Sbjct: 128 ALLPDVEEGIVTLVGATTSNPFFAVNAALVSRSQIFQFLPLSVDDIKTLLARALADR--- 184

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
                            RG     + +  EAA  +A  S G  R A   L  +   +   
Sbjct: 185 ----------------SRGLGSHEVILEPEAAEFLATSSEGDARRALTALE-IGVLSSSE 227

Query: 237 HAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRD 294
                TRE+A+ +L + A   D  G    D                   T SA +   R 
Sbjct: 228 RPLRFTRELAEESLQKKAVVYDPDGDGHYD-------------------TTSALIKSIRG 268

Query: 295 AIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +  D    ++ +        R   R L+ +A + +G   P 
Sbjct: 269 SDVDAALYWLARMLEAGEEIRFICRRLVILASEDIGNADPQ 309


>gi|315925759|ref|ZP_07921966.1| replication-associated recombination protein A [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315620868|gb|EFV00842.1| replication-associated recombination protein A [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 442

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 74/342 (21%), Positives = 123/342 (35%), Gaps = 55/342 (16%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
            +E L   +    +   S +RP+T++   GQ       +          + +  ++  GP
Sbjct: 5   HQESLFPHSAH--EPLASRIRPQTIDAIVGQEHLLGEGRALRRLIDR--DDIPSMILWGP 60

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHR 116
           PG+GKTTLAQV+AR+           V +   D+  ++ + +       R ++FIDEIHR
Sbjct: 61  PGVGKTTLAQVIARQT-AAAFVAFSAVNSGIKDIKKIMGDAKSHAAFGRRTLVFIDEIHR 119

Query: 117 LSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRF 174
            +   ++   P +ED  + L+    E PS       LSR  +         L  PL    
Sbjct: 120 FNKAQQDAFLPYVEDGSIVLIGATTENPSFEINSALLSRCRV--------FLLKPL---- 167

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLT---GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
                      E + T++ R         L    +    I + + G  R A   L  + D
Sbjct: 168 ---------TPEAIATLLTRALAEGFDAPLTADAQILRAIGVFADGDARTALNTLEMLVD 218

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
            + V          AD ALL   +D+               R    G      ISA    
Sbjct: 219 NSPVTGG----WLAADEALLAQLLDRKTL------------RYDKDGEEHYNLISALHKS 262

Query: 292 PRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
            R++  D    ++ +       P    R L+  A + +G+  
Sbjct: 263 MRNSDADAAIYWLTRMLEGGEDPLYIARRLIRFASEDIGLAD 304


>gi|291409441|ref|XP_002721014.1| PREDICTED: Werner helicase interacting protein [Oryctolagus
           cuniculus]
          Length = 589

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 70/349 (20%), Positives = 129/349 (36%), Gaps = 41/349 (11%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLG 66
           R + +       +RP +L+++ GQ  A      L+  +E        +  ++  GPPG G
Sbjct: 143 RQMLEGKPLADKMRPESLQDYIGQSRAVGQETLLRSLLE-----TNEIPSLILWGPPGCG 197

Query: 67  KTTLAQVVARELGVNFRST--SGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRL 117
           KTTLA ++A     +           AK  D+  ++   +        + +LFIDEIHR 
Sbjct: 198 KTTLAHIIANNSKKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRF 257

Query: 118 SIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAA-----TTRVGLLTNPL 170
           +   ++   P +E   + L+    E PS +     LSR  +I          V +L   +
Sbjct: 258 NKSQQDTFLPHVECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAI 317

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
               GI +  +    + L       +    + + D+A   +A  S G  R     L+   
Sbjct: 318 NS-LGIHVLDSSRPSDPLSHSSN-SSSEPSVFIEDKAVDTLAYLSDGDARTGLNGLQLAV 375

Query: 231 DFAEVAHAKTITREIADA-----ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETI 285
             A ++  K   ++   A      L+     K G  +  + Y      ++         I
Sbjct: 376 -LARLSSRKMFCKKSGQAYSPSRVLITENDVKEGLQRSHILYDRAGEEHYNC-------I 427

Query: 286 SAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           SA     R + ++    ++ +       P    R L+  A + +G+  P
Sbjct: 428 SALHKAMRGSDQNASLYWLARMLEGGEDPLYVARRLVRFASEDIGLADP 476


>gi|323135882|ref|ZP_08070965.1| AAA ATPase central domain protein [Methylocystis sp. ATCC 49242]
 gi|322398973|gb|EFY01492.1| AAA ATPase central domain protein [Methylocystis sp. ATCC 49242]
          Length = 436

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 67/343 (19%), Positives = 109/343 (31%), Gaps = 51/343 (14%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D                  LRP  L+E  GQ                RA +L  ++F 
Sbjct: 1   MSDLFQAAKLEEGAPRPLADRLRPARLDEVAGQDHLLGPEAALTRLI--RAGSLGSLIFW 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALL------TNLEDRDVLFIDEI 114
           GPPG GKTT+A+++A E  + F   S  + +   DL                 +LF+DEI
Sbjct: 59  GPPGTGKTTVARLLAHETKLAFVQISA-IFSGVADLKKTFDAARARRAAGQGTLLFVDEI 117

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++   P MED  + L+    E PS       LSR  ++   +        L  
Sbjct: 118 HRFNRAQQDSFLPVMEDGTITLIGATTENPSFELNAALLSRARVMTFRSLDAAAIEKLLA 177

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R                      A+   L +  +A   +   + G  R A  L   +   
Sbjct: 178 R-------------------AEAAEGKTLPLDADAREALIAMADGDGRAALTLCEEIWRA 218

Query: 233 AEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEP 292
           A     +   R      + R A       +     ++ + +   G               
Sbjct: 219 A--HEGEIFDRAGLSEVVQRRAPIYDKAQEGHYNLISALHKCVRG--------------- 261

Query: 293 RDAIEDLIEPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
             +  D    Y  +       P    R ++ +A + +G+  P 
Sbjct: 262 --SDPDAALYYFARMLDAGEDPLFLARRIVRMAVEDIGLADPQ 302


>gi|260819040|ref|XP_002604690.1| hypothetical protein BRAFLDRAFT_228800 [Branchiostoma floridae]
 gi|229290018|gb|EEN60701.1| hypothetical protein BRAFLDRAFT_228800 [Branchiostoma floridae]
          Length = 449

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 62/333 (18%), Positives = 120/333 (36%), Gaps = 34/333 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
                +RP  L+ + GQ +A      L++ +EA       +  ++  GPPG GKTT+AQ+
Sbjct: 16  PLAERVRPTCLDLYVGQTKALGAGSMLRLLVEA-----HDIPSMVLWGPPGCGKTTMAQI 70

Query: 74  VAR---ELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEE 123
           +A+   +   +        ++   ++  ++   +        + +LFIDEIHR +   ++
Sbjct: 71  IAKNAKQHQNSRFVALSATMSGVDEVRDVIKVAKNEQTMFRRKTILFIDEIHRFNKKQQD 130

Query: 124 ILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
              P +E   + L+    E PS       LSR  +I            +  R    I   
Sbjct: 131 TFLPHVESGTIVLIGATTENPSFSLNSALLSRCRVIVLEKLGVEDVELILRRAAHAIGDM 190

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
              +  L  +         + +  EA   +A    G  R A   L+         H+   
Sbjct: 191 --TLLFLCNVFTAS---KPVTIQKEAITTLAHLCDGDARTALNGLQTAVRSQMAIHSNHG 245

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
            ++     ++ +   K G  +  + Y      ++         ISA     R +  +   
Sbjct: 246 DKQDTQPVVVTVEHVKEGLQRSHVLYDRAGEEHY-------NIISAMHKSIRGSDANAAL 298

Query: 302 PYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
            ++ +       P    R L+  A + +G+  P
Sbjct: 299 YWLARMLAGGEDPLYVARRLIRCASEDVGLADP 331


>gi|169771463|ref|XP_001820201.1| AAA family ATPase [Aspergillus oryzae RIB40]
 gi|83768060|dbj|BAE58199.1| unnamed protein product [Aspergillus oryzae]
          Length = 527

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 70/328 (21%), Positives = 116/328 (35%), Gaps = 55/328 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEAC--SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
                +RPRTL++  GQ        L+  IE      + +  ++  G PG GKTT+A+V+
Sbjct: 115 PLAERMRPRTLDDVCGQDLVGPHGVLRGLIE-----HDRVPSMILWGGPGTGKTTIARVI 169

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYP 127
           A  +G  F   +    +   +   + ++ +        + ++F DEIHR S   +++   
Sbjct: 170 ASMVGSRFVEINS-TSSGVAECKKIFSDAKSELNLTGRKTIIFCDEIHRFSKSQQDVFLG 228

Query: 128 AMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
            +E  Q+ L+    E PS +     LSR      T         + DR  + +    Y  
Sbjct: 229 PVESGQVTLIGATTENPSFKVQNALLSRCRTFTLTKLTDEDVKSILDR-ALQVEGPNYSP 287

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
             L              V DE    +A  S G  R +  LL    D +          E+
Sbjct: 288 SAL--------------VDDELINYLAKFSDGDARTSLNLLELAMDLS--KRPGITKEEL 331

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
             +    L  D+ G    D                   TISA     R +  D    Y+ 
Sbjct: 332 KRSLTKTLVYDRAGDQHYD-------------------TISAFHKSLRGSDPDAALYYLA 372

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDI 331
           +       P    R L+ +A + +G+  
Sbjct: 373 RMIQSGEDPLYIARRLIVVASEDIGLAD 400


>gi|94265038|ref|ZP_01288806.1| AAA ATPase, central region [delta proteobacterium MLMS-1]
 gi|93454471|gb|EAT04759.1| AAA ATPase, central region [delta proteobacterium MLMS-1]
          Length = 441

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 85/328 (25%), Positives = 135/328 (41%), Gaps = 42/328 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP +L +F GQ     + K+   +   R+  L  +L  GPPG GKTTLA+++AR
Sbjct: 9   PLAERMRPASLAQFVGQRHLLGDDKLL--SGLLRSGHLPSLLLWGPPGSGKTTLARLLAR 66

Query: 77  ELGVNFRSTSGPVIAKAGDLAAL-------LTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           + G +F   S  V++   ++ A+       L       VLF+DEIHR +   ++   P +
Sbjct: 67  QSGADFIFFSA-VLSGVKEIRAIVERSRLNLEKSGRGSVLFVDEIHRFNKGQQDAFLPHV 125

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E   L L+    E PS + +   LSR        RV +L    +D  G  +     +   
Sbjct: 126 ESGLLTLIGATTENPSFQVIAPLLSRC-------RVLVLNALEEDELGEILAAALSDR-- 176

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
                Q+G   + L+++DEAA  +   + G  R     L       E+A A    ++ AD
Sbjct: 177 -----QQGLGESELSISDEAAAHLIAVADGDARNLLGSL-------EIAAALVADKKAAD 224

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
              + LA  +    +  LRY        G G      ISA     RD+  D    ++ + 
Sbjct: 225 TGRIELADIEEAIQRKSLRY-------DGAGEEHYNLISALHKSLRDSDPDGALYWLGRM 277

Query: 308 GFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                 P    R L+  A + +G   P 
Sbjct: 278 LAAGEQPLYIARRLIRFASEDIGNADPQ 305


>gi|296120806|ref|YP_003628584.1| ATPase AAA [Planctomyces limnophilus DSM 3776]
 gi|296013146|gb|ADG66385.1| AAA ATPase central domain protein [Planctomyces limnophilus DSM
           3776]
          Length = 432

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 75/341 (21%), Positives = 124/341 (36%), Gaps = 50/341 (14%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            + + ++       + +RPR L EF GQ        +      A  + +  V+F GPPG+
Sbjct: 6   SIEASHLEDAKPLAARMRPRNLNEFIGQSHVLGEGTLLRRMLIA--DRIHSVVFYGPPGV 63

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLS 118
           GKTTLA+++A+     F + +        +L   L    +R        +LF+DE+H  +
Sbjct: 64  GKTTLAELIAKSSKRRFIALNAAAT-GVKELREALDESRERLKSSGTKTLLFVDELHHFN 122

Query: 119 IIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
              + +L P +E   + L+      P    +   LSR  +            PL      
Sbjct: 123 KQQQNVLLPDVEQGVVSLVAATTANPFFALIAPLLSRSQIFEL--------KPLSTEEIK 174

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
            +       E       RG     L V +E    +A  S G  R A   L    +  +  
Sbjct: 175 AVLRQALSDE------TRGYGQKNLKVPEEVFDFLAASSDGDARRALLALEIAVESLDSR 228

Query: 237 HAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRD 294
               +T EIA  +L + A   DK G D  D+                   ISA +   R 
Sbjct: 229 -VLELTLEIAQESLQKKAIRYDKSGDDHYDV-------------------ISAFIKSMRG 268

Query: 295 AIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +  D    ++ +       PR   R ++  A + +G+  P 
Sbjct: 269 SDADATIYWLARMLEAGEEPRFIARRIVIAASEDVGMADPQ 309


>gi|330466933|ref|YP_004404676.1| recombination factor protein RarA [Verrucosispora maris AB-18-032]
 gi|328809904|gb|AEB44076.1| recombination factor protein RarA [Verrucosispora maris AB-18-032]
          Length = 503

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 77/332 (23%), Positives = 118/332 (35%), Gaps = 52/332 (15%)

Query: 15  EDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
            DA +   +RP TL+E  GQ    +      +      +A   V+  GPPG GKTT+A +
Sbjct: 33  PDAPLPVRMRPATLDELVGQDHLLAPGAPLRQ--LVTGDAPMSVILWGPPGSGKTTIAHL 90

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILY 126
           VA      F + S  + A   D+ A++     +        VLFIDE+HR S   ++ L 
Sbjct: 91  VAAATDRRFVAMSA-LSAGVKDVRAVIDTARRQRRSGGPPTVLFIDEVHRFSKTQQDSLL 149

Query: 127 PAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
            A+ED  + L+    E P    +   LSR  L+           PL D     +      
Sbjct: 150 AAVEDRTVTLLAATTENPYFSVISPLLSRCVLLTL--------QPLDDAAVRGLLRRAMT 201

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            E       RG     L +  EA   +   + G  R A   L      A       I   
Sbjct: 202 DE-------RGLAG-ALTLDSEAEDHLVRLAGGDVRKALTALEAAAGSATALGTGRIDLA 253

Query: 245 IADAALL--RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            A+ A+    +  D+ G    D+                    SA +   R +  D    
Sbjct: 254 TAERAVDTAAVRYDRAGDAHYDV-------------------TSAFIKSMRGSDVDAALH 294

Query: 303 YMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           ++ +        R   R L+  A + +G+  P
Sbjct: 295 WLARMLVAGEDARFIARRLVIFASEDVGMADP 326


>gi|319892681|ref|YP_004149556.1| Uncharacterized ATPase (AAA family) associated with cysteine
           desulfurase [Staphylococcus pseudintermedius HKU10-03]
 gi|317162377|gb|ADV05920.1| Uncharacterized ATPase (AAA family) associated with cysteine
           desulfurase [Staphylococcus pseudintermedius HKU10-03]
          Length = 423

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 78/321 (24%), Positives = 132/321 (41%), Gaps = 38/321 (11%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +   S +RPR ++E  GQ        +      A+   L  ++F GPPG+GKT++AQ +A
Sbjct: 4   EPLASRMRPRNIDEVIGQQHLVGETGIIRRMVNAK--RLSSMIFYGPPGIGKTSIAQAIA 61

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
                 FR  +  V     D+  ++   +   + +L +DEIHRL    ++ L P +E+ +
Sbjct: 62  GSTAFKFRQLNA-VTNTKKDMQMIVDEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGK 120

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           + +++G   S     IN       A  +R  +      D+  I + LN           +
Sbjct: 121 I-VLIGATTSNPYHAIN------PAIRSRAQIFELFPLDKNDIKVALN-----HALEDEE 168

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           RG K    ++ D+A    A +S+G  R A   L      A       IT + A+  L R 
Sbjct: 169 RGLKQFDASIDDDAFEYFATQSQGDVRSALNALELAVLSAN-NQPPHITLQDAEDCLQRG 227

Query: 254 AI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
           A   DK G    D+  ++   ++  G  V      A L              +IQ G + 
Sbjct: 228 AFLSDKDGDMHYDV--MSAFQKSIRGSDVD-----AAL---------HYLGRLIQAGDLP 271

Query: 312 RTPRGRLLMPIAWQHLGIDIP 332
                R L+ I+++ +G+  P
Sbjct: 272 TI--ARRLLVISYEDIGLASP 290


>gi|294793998|ref|ZP_06759135.1| ATPase, AAA family [Veillonella sp. 3_1_44]
 gi|294455568|gb|EFG23940.1| ATPase, AAA family [Veillonella sp. 3_1_44]
          Length = 433

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 79/344 (22%), Positives = 131/344 (38%), Gaps = 52/344 (15%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD    ++   + E   +  +RP  L+   GQ +A           +   + +  +LF G
Sbjct: 1   MDSLFDMTPTNTYEPLPV-RMRPTKLDHLYGQEKAVGKGTFLRAMVEK--DTIPSMLFYG 57

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALL-------TNLEDRDVLFIDEI 114
           P G GKTTLA ++A+ +  ++        A  G+L  ++        +L+ R +LF+DEI
Sbjct: 58  PCGTGKTTLAGIIAK-VSNSYFVNLNATNAGIGELRTIIEDARKRVRSLQQRTILFLDEI 116

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   +++L P +ED  + L+    E P     +  LSR  LI               
Sbjct: 117 HRFNKSQQDVLLPCVEDGTIILIGATTENPFFEVNRPLLSRLRLITLEALTPKA------ 170

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
             G  +R    + E        G     L VTDE   ++ +   G  R+A  +L +    
Sbjct: 171 -IGQILRRAITDEEV-------GLGKRHLQVTDEVLEDVGIFVNGDGRMALNILEQAA-- 220

Query: 233 AEVAHAKTITREIADAALLR--LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
           A V     IT E+ +  + R     DK G    D                   TISA + 
Sbjct: 221 AMVPDEGMITIEVLEKVVGRRIYTYDKKGDSHYD-------------------TISAFIK 261

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
             R +       Y+ +       P    R ++  A + +G+  P
Sbjct: 262 SMRGSDVQATVHYLARMIEAGEDPNFIARRIVICAAEDVGLADP 305


>gi|150396236|ref|YP_001326703.1| recombination factor protein RarA [Sinorhizobium medicae WSM419]
 gi|150027751|gb|ABR59868.1| AAA ATPase central domain protein [Sinorhizobium medicae WSM419]
          Length = 436

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 72/334 (21%), Positives = 120/334 (35%), Gaps = 51/334 (15%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
             ++        LRPRTL E TGQ                 + +L  ++F GPPG GKTT
Sbjct: 11  PEMASARPLADRLRPRTLGEVTGQEHLTGADGGLTRMI--ASGSLGSMIFWGPPGTGKTT 68

Query: 70  LAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
           +A++++ E G+ F   S        + K  + A        + +LF+DEIHR +   ++ 
Sbjct: 69  VARLLSGEAGLAFEQISAIFSGVADLKKVFESARARRMSGRQTLLFVDEIHRFNRAQQDS 128

Query: 125 LYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             P +ED  + L+    E PS       LSR                        +    
Sbjct: 129 FLPVIEDGTVILVGATTENPSFELNAALLSR---------------------ARVLTFKP 167

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           ++   L+ +++R     G ++  +             R+A    R +   AE        
Sbjct: 168 HDESSLEELLKRAEAAEGKSLPLDG-----DARASLIRMADGDGRAILTLAEEVWRAARP 222

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVG-IETISAGLSEPRDAIEDLIE 301
            E+ D A L+  + +              A  +  G  G    ISA     R +  D   
Sbjct: 223 DELFDVAALQEIVQRR-------------APVYDKGQDGHYNLISALHKSVRGSDPDAAL 269

Query: 302 PYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            Y+ +       P   GR L+ +A + +G+  P 
Sbjct: 270 YYLCRMFDAGEDPLYIGRRLVRMAVEDIGLGDPQ 303


>gi|312868718|ref|ZP_07728910.1| ATPase, AAA family [Lactobacillus oris PB013-T2-3]
 gi|311095704|gb|EFQ53956.1| ATPase, AAA family [Lactobacillus oris PB013-T2-3]
          Length = 434

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 73/320 (22%), Positives = 124/320 (38%), Gaps = 37/320 (11%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +     +RPRTLEE  GQ       K+     KAR   L  ++  GPPG GKT++A  +A
Sbjct: 3   EPLAYRMRPRTLEEVVGQQHLVGPGKIIARMVKAR--MLSSMILYGPPGTGKTSIASAIA 60

Query: 76  RELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
                 FR  +    +K    + A    +    +L +DEIHRL    ++ L P +E  ++
Sbjct: 61  GSTKYAFRKLNAATDSKKDLQVVAEEAKMSGTVILLLDEIHRLDKAKQDFLLPHLESGRI 120

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
            +++G       + IN +    I + T++  +     D   + I     + E       R
Sbjct: 121 -VLIGATTENPYISINPA----IRSRTQIFPVHPLSSDDVKVAIARALTDKE-------R 168

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI--TREIADAALLR 252
           G     L +   A  ++A  + G  R A   L       +      I  T  + + ++ +
Sbjct: 169 GLGKLPLVLEANAEEQLARATNGDLRSALNGLELAARSTDPGPDGKIHLTLPVIEESVQK 228

Query: 253 LAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
            A+  DK G    D      +   F     G +  +A                +I+ G +
Sbjct: 229 KALTADKDGDAHYD------VISAFQKSIRGSDVDAALH----------YLARLIEAGDL 272

Query: 311 QRTPRGRLLMPIAWQHLGID 330
             T   R LM IA++ +G+ 
Sbjct: 273 --TSIVRRLMVIAYEDIGLA 290


>gi|259503655|ref|ZP_05746557.1| AAA family ATPase [Lactobacillus antri DSM 16041]
 gi|259168374|gb|EEW52869.1| AAA family ATPase [Lactobacillus antri DSM 16041]
          Length = 433

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 73/320 (22%), Positives = 124/320 (38%), Gaps = 37/320 (11%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +     +RPRTLEE  GQ       K+     KAR   L  ++  GPPG GKT++A  +A
Sbjct: 2   EPLAYRMRPRTLEEVVGQQHLVGPGKIISRMVKAR--MLSSMILYGPPGTGKTSIASAIA 59

Query: 76  RELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
                 FR  +    +K    + A    +    +L +DEIHRL    ++ L P +E  ++
Sbjct: 60  GSTRYAFRKLNAATDSKKDLQIVAEEAKMSGTVILLLDEIHRLDKAKQDFLLPHLESGRI 119

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
            +++G       + IN +    I + T++  +     D   + I     + E       R
Sbjct: 120 -VLIGATTENPYISINPA----IRSRTQIFPVHPLSIDDIKVAIARALTDKE-------R 167

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI--TREIADAALLR 252
           G     L +   A  ++A  + G  R A   L       +      I  T  + + ++ +
Sbjct: 168 GLGKMPLVLAANAEEQLARATNGDLRSAFNGLELAARSTDPGPDGKIHLTLPVIEESVQK 227

Query: 253 LAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
            A+  DK G    D      +   F     G +  +A                +I+ G +
Sbjct: 228 KALSADKDGDAHYD------VISAFQKSIRGSDVDAALH----------YLARLIEAGDL 271

Query: 311 QRTPRGRLLMPIAWQHLGID 330
             T   R LM IA++ +G+ 
Sbjct: 272 --TSIARRLMVIAYEDIGLA 289


>gi|288958714|ref|YP_003449055.1| ATPase [Azospirillum sp. B510]
 gi|288911022|dbj|BAI72511.1| ATPase [Azospirillum sp. B510]
          Length = 439

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 73/337 (21%), Positives = 112/337 (33%), Gaps = 60/337 (17%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
             +        LRPRTL+E  GQ               AR   L  ++  GPPG GKTT+
Sbjct: 15  ESAAPRPLADRLRPRTLDEVVGQDHLLKPDGPLGRMVAAR--RLASMILWGPPGCGKTTI 72

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALL------TNLEDRDVLFIDEIHRLSIIVEEI 124
           A+++A    ++F   S  V +   DL  +              +LFIDEIHR +   ++ 
Sbjct: 73  ARLLAHSTDLHFEPLSA-VFSGVADLRKVFDAARARRAAGQGTLLFIDEIHRFNRSQQDG 131

Query: 125 LYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             P +ED  + L+    E PS       LSR                          LN 
Sbjct: 132 FLPFVEDGTVTLVGATTENPSFELNAALLSR---------------------AQVFVLNR 170

Query: 183 YEIEDLKTIVQRGAKLT--GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +   L+ ++ R        L +  +A   +   + G  R    L     +   +  A  
Sbjct: 171 LDDAALEKLLSRAEAEMGRPLPLDADARAAVKAMADGDGRFCLNLCE---ELFALPGAAV 227

Query: 241 ITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
           +      A + R A   DK      +L                   ISA     R +  D
Sbjct: 228 LDTNALAATIQRRAPLYDKAQEGHYNL-------------------ISALHKSLRGSDTD 268

Query: 299 LIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
               +  +       PR   R L   A + +G+  P+
Sbjct: 269 AALYWYSRMLDGGEDPRYIARRLTRFAVEDVGLADPN 305


>gi|168334208|ref|ZP_02692411.1| AAA ATPase central domain protein [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 420

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 85/354 (24%), Positives = 138/354 (38%), Gaps = 68/354 (19%)

Query: 2   MDREGLL-SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD    + ++N+    A    LRP  L +  GQ    +  K+   A  A  + L  ++F 
Sbjct: 1   MDLFDYIGTKNIDSPLAL--KLRPVALAQIVGQEHILAKGKLLHRAITA--DKLQSMIFY 56

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDE 113
           GPPG GKTT+A+V+A+    +F + +     KA D+  L+ N +D         ++FIDE
Sbjct: 57  GPPGSGKTTIAKVIAKTTTSHFETLNATTSGKA-DILRLVQNAKDSLATSSKHTIIFIDE 115

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++ L P  ED  + L+    E P     +  LSR                  
Sbjct: 116 IHRFNKAQQDALLPYAEDGTIILIGATTENPYFEVNRALLSR------------------ 157

Query: 172 DRFGIPIRLNFYEIEDLKTIVQR-------GAKLTGLAVTDEAACEIAMRSRGTPRIAGR 224
               +   L+    E++ TI+QR       G  +    +TD+AA  IA  + G  R A  
Sbjct: 158 ---SLIFELHSLTNENIITILQRAITDTDKGLGVYNAILTDQAAEFIATHAAGDARAALN 214

Query: 225 LLRRVRDFAEVAHAKT--ITREIADAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPV 280
            L       E +      IT ++A   + +     DK G +  D+               
Sbjct: 215 ALELATLTTERSADGKINITAQVASECMQKKFLNYDKKGDNHYDV--------------- 259

Query: 281 GIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
               ISA +   R +  +    Y+ +        +   R +M  A + +G   P
Sbjct: 260 ----ISAFIKSMRGSDANATLHYLARMLESGEDIKFIARRIMICASEDVGNADP 309


>gi|288555372|ref|YP_003427307.1| recombination factor protein RarA [Bacillus pseudofirmus OF4]
 gi|288546532|gb|ADC50415.1| recombination factor protein RarA, AAA ATPase [Bacillus
           pseudofirmus OF4]
          Length = 422

 Score =  140 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 62/329 (18%), Positives = 122/329 (37%), Gaps = 45/329 (13%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           +++     +RP+ +E+  GQ     + K+           L  ++  GPPG+GKT++A  
Sbjct: 2   KKEPLAYRMRPKKIEDIIGQSHLVGDGKLLRRMVDVGQ--LSSMILYGPPGVGKTSIATA 59

Query: 74  VARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           +A      F+  +  V  K   ++A     +  + ++ +DE+HRL    ++ L P +E  
Sbjct: 60  IAGSTDTPFKLLNAVVHNKKDMEIAVAEAKMHGQLIVILDEVHRLDKAKQDFLLPHLEKG 119

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
            + L+      P         SR  +    +          D     +       E    
Sbjct: 120 LIILIGATTANPYHSINPAIRSRCQIFELESLTP-------DDIKTALIRAIQNPES--- 169

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR--DFAEVAHAKTITREIADA 248
               G     + + ++A   +A    G  R A   L       FA     K I+ E A++
Sbjct: 170 ----GFGKEQIEMEEDAISHLAHMCGGDVRSALNALELAVKSTFATEDGIKHISLETAES 225

Query: 249 ALLR--LAIDKMGFDQLDLRYLTMIARNFGGGPV--GIETISAGLSEPRDAIEDLIEPYM 304
            + +     DK G    D+  L+   ++  G  V  G+  ++                 +
Sbjct: 226 CIQKKSFHHDKDGDAHYDV--LSAFQKSIRGSDVNAGLHYLAR----------------L 267

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           ++ G +  T   R L+ I+++ +G+  P 
Sbjct: 268 LEAGDL--TSIARRLLVISYEDIGLANPQ 294


>gi|189220465|ref|YP_001941105.1| ATPase [Methylacidiphilum infernorum V4]
 gi|189187323|gb|ACD84508.1| ATPase [Methylacidiphilum infernorum V4]
          Length = 454

 Score =  140 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 70/333 (21%), Positives = 121/333 (36%), Gaps = 52/333 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RPRTLEE  GQ +     K       A  + +  ++  GPPG GKTTLA+++A+
Sbjct: 21  PLSTKMRPRTLEELVGQEDILLPGKPLRRLIDA--DRIQSLILYGPPGTGKTTLAEIIAK 78

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAM 129
           +   +F +    V A   D+  ++          +   +LFIDEIHR +   +++L P +
Sbjct: 79  KTK-SFFARLNAVEAGVSDIRKVIGQAALRWKKEKKHTLLFIDEIHRFNKSQQDVLLPDL 137

Query: 130 EDFQLDLM--VGEGPSARSVKINLSR-----FTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E   + L+      P        LSR     F  ++  +   LL   L D+         
Sbjct: 138 ETGIIKLIGATTHNPCFYLTAPLLSRSHLFEFKPLSKQSLETLLLRALTDK--------- 188

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
                     +RG     +++  EA   +     G  R     L      +   +     
Sbjct: 189 ----------ERGLGNYEVSIEKEAKEFLLNLCEGDARRLLNYLEIAVLSSLQENQPAPV 238

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
                          +  + +       I R   G     +TISA +   R +  D    
Sbjct: 239 I--------------LNIETIQNLVQKKIPRYDHGEDEHYDTISAFIKSIRGSDPDSALY 284

Query: 303 YMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           ++ +       PR   R L+ +A + +G+  P 
Sbjct: 285 WLAKMISAGEDPRFIARRLVILATEDIGLANPQ 317


>gi|329926789|ref|ZP_08281197.1| ATPase, AAA family protein [Paenibacillus sp. HGF5]
 gi|328938989|gb|EGG35357.1| ATPase, AAA family protein [Paenibacillus sp. HGF5]
          Length = 435

 Score =  140 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 59/285 (20%), Positives = 104/285 (36%), Gaps = 26/285 (9%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD   +              +RP +L+E+ GQ       K+   A +A  + +  +L  G
Sbjct: 1   MDLFSIGREGDRDSRLLADRMRPSSLDEYIGQEHIIGPGKLLRRAIEA--DQVSSILLYG 58

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEI 114
           PPG GKTTLA +++++   +F   +  V A   D+  ++   +        + +LF+DE+
Sbjct: 59  PPGCGKTTLAHIISQQTKGHFVRLNA-VEASVKDVREVIEQAQSNRSLYGTKTILFLDEV 117

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++ L PA+E+  +  +    E P        +SR TL            PL  
Sbjct: 118 HRFNSSRQDALLPAVENGTIIFIGATTENPFHYVNGALMSRSTLFQL--------QPLTK 169

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
              +         +D      +G     L   +EA   IA  + G  R A   L      
Sbjct: 170 DHSMIAMRRALTDQD------KGLGFMDLKADEEALEHIAAMANGDIRRALNALELAAMT 223

Query: 233 AEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGG 277
                + T+   +  A            +      L+   ++  G
Sbjct: 224 TPPDASGTVHITLEVAEESIRRPTVRADESTQYDVLSAFHKSIRG 268


>gi|269798266|ref|YP_003312166.1| ATPase AAA [Veillonella parvula DSM 2008]
 gi|282850504|ref|ZP_06259883.1| recombination factor protein RarA [Veillonella parvula ATCC 17745]
 gi|269094895|gb|ACZ24886.1| AAA ATPase central domain protein [Veillonella parvula DSM 2008]
 gi|282579997|gb|EFB85401.1| recombination factor protein RarA [Veillonella parvula ATCC 17745]
          Length = 433

 Score =  140 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 79/351 (22%), Positives = 132/351 (37%), Gaps = 66/351 (18%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD    ++   + E   +  +RP  L+   GQ +A           +   + +  +LF G
Sbjct: 1   MDSLFDMTPTNTYEPLPV-RMRPTKLDHLYGQEKAIGKGTFLRAMVEK--DTIPSMLFYG 57

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALL-------TNLEDRDVLFIDEI 114
           P G GKTTLA ++A+ +  +         A  G+L  ++        +L+ R +LF+DEI
Sbjct: 58  PCGTGKTTLAGIIAK-VSNSHFVNLNATNAGIGELRTIIEDARKRVRSLQQRTILFLDEI 116

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   +++L P +ED  + L+    E P     +  LSR  LI               
Sbjct: 117 HRFNKSQQDVLLPCVEDGTIILIGATTENPFFEVNRPLLSRLRLITLEA----------- 165

Query: 173 RFGIPIRLNFYEIEDLKTIVQR-------GAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
                        + +  I++R       G     L VTDE   ++ +   G  R+A  +
Sbjct: 166 ----------LTPKAIGQILRRAITDEAVGLGKRHLQVTDEVLEDVGIFVNGDGRMALNI 215

Query: 226 LRRVRDFAEVAHAKTITREIADAALLR--LAIDKMGFDQLDLRYLTMIARNFGGGPVGIE 283
           L +    A V    TIT E+ +  + R     DK G    D                   
Sbjct: 216 LEQAA--AMVPDEGTITIEVLEKVVGRRIYTYDKKGDSHYD------------------- 254

Query: 284 TISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           TISA +   R +       Y+ +       P    R ++  A + +G+  P
Sbjct: 255 TISAFIKSMRGSDVQATVHYLARMIEAGEDPNFIARRIVICAAEDVGLADP 305


>gi|182679007|ref|YP_001833153.1| ATPase central domain-containing protein [Beijerinckia indica
           subsp. indica ATCC 9039]
 gi|182634890|gb|ACB95664.1| AAA ATPase central domain protein [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 435

 Score =  140 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 73/344 (21%), Positives = 115/344 (33%), Gaps = 53/344 (15%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D                  LRPR L+E  GQ               A   +L  ++F 
Sbjct: 1   MSDLFSAAGLEKDVPGPLADRLRPRRLDEVAGQEHLLGPEGALTRLVAA--GSLGSLIFW 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIH 115
           GPPG GKTT+A+++A E  + F   S        + K  + A     L    +LF+DEIH
Sbjct: 59  GPPGTGKTTVARLLANETKLAFVQISAIFSGVAELKKVFEEARARRRLGQGSLLFVDEIH 118

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P MED  + L+    E PS       LSR                    
Sbjct: 119 RFNRAQQDSFLPVMEDGTVTLIGATTENPSFELNAALLSR-------------------- 158

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLT--GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
               +  +    E ++ ++ R   +    L + +EA   +   + G  R A  L   V  
Sbjct: 159 -ARVLVFHALSEEAIEKLLARAEAIEGRPLPLDEEARITLRRMADGDGRAALTLAEEVWR 217

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
            A      +    +  A       DK      +L                   ISA    
Sbjct: 218 AAREGEIFSPATLVQVAQRRAPIYDKAQEGHYNL-------------------ISALHKA 258

Query: 292 PRDAIEDLIEPYMIQQ--GFIQRTPRGRLLMPIAWQHLGIDIPH 333
            R +  +    Y+ +   G   R    R ++ +A + +G+  P 
Sbjct: 259 VRGSDPNAALYYLARMFEGGEDRLFIARRVVRMAVEDIGLADPQ 302


>gi|157693158|ref|YP_001487620.1| recombination factor protein RarA [Bacillus pumilus SAFR-032]
 gi|157681916|gb|ABV63060.1| crossover junction endodeoxyribonuclease ATPase [Bacillus pumilus
           SAFR-032]
          Length = 421

 Score =  140 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 71/325 (21%), Positives = 124/325 (38%), Gaps = 43/325 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP  +E+  GQ       ++     +A+   L  ++  GPPG+GKT++A  +A 
Sbjct: 3   PLAYRMRPSHIEDIIGQEHLVGEGQIIRRMVEAKH--LSSMILYGPPGIGKTSIATAIAG 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
              + FR+ +  VI    D+ A+    +   + +L +DE+HRL    ++ L P +E+  +
Sbjct: 61  STSIAFRTLNA-VIHNKKDMEAVAAEAKMSGQVILILDEVHRLDKGKQDFLLPYLENGMI 119

Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            L+      P         SR  +            PL+            + E      
Sbjct: 120 ILIGATTANPYHAINPAIRSRTQIFEL--------KPLETEQIKAALTRALQDEH----- 166

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR--DFAEVAHAKTITREIADAAL 250
            RG     + V DEA    A    G  R A   L        A+ A    IT   A+  L
Sbjct: 167 -RGLGGYEVTVDDEAMHHFANGCGGDVRSALNALELAVLSTKADEAGHIVITLAAAEECL 225

Query: 251 LR--LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            +   + DK G    D+  L+   ++  G            S+   A+  L    +I+ G
Sbjct: 226 QKKSFSHDKNGDAHYDV--LSAFQKSIRG------------SDADAALHYLAR--LIEAG 269

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIPH 333
            ++     R L+ +A++ +G+  P 
Sbjct: 270 DLESIS--RRLLVMAYEDIGLASPQ 292


>gi|89053112|ref|YP_508563.1| recombination factor protein RarA [Jannaschia sp. CCS1]
 gi|88862661|gb|ABD53538.1| Recombination protein MgsA [Jannaschia sp. CCS1]
          Length = 436

 Score =  140 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 72/337 (21%), Positives = 118/337 (35%), Gaps = 57/337 (16%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGL 65
           +            LRP TL+   GQ     +   L+V +++      AL  ++F GPPG+
Sbjct: 12  AETARGPRPLADRLRPATLDAVIGQGHLLGSEGSLRVMLDSG-----ALSSLIFWGPPGV 66

Query: 66  GKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GKTT+A+++A E  +NF   S      P + K  + A +        +LF+DEIHR +  
Sbjct: 67  GKTTIARLLADETALNFVQISAIFTGMPDLRKVFEAAKIRRTNGQGTLLFVDEIHRFNKA 126

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++   P MED  + L+    E PS       +SR  ++          + L  R     
Sbjct: 127 QQDGFLPHMEDGTILLVGATTENPSFELNAAVMSRSQVMVLERLSDDDLDALLQR----- 181

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
                     +  + R   L                     R+A      +R+ A+    
Sbjct: 182 ---------AEAELDRKLPLLP-----------------DARVA------LREMADGDGR 209

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             +      AA     +D     Q   R     A+    G      ISA     R +  D
Sbjct: 210 AMLNLVEQVAAWKVAPLDTQALGQ---RLQRRAAQYDKSGDAHYNLISALHKSVRGSDPD 266

Query: 299 LIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
               +  +       PR   R +  +A + +G+  P 
Sbjct: 267 AALYWFARMLEGGEDPRYLARRITRMAVEDIGLADPQ 303


>gi|194037953|ref|XP_001924550.1| PREDICTED: ATPase WRNIP1 [Sus scrofa]
          Length = 503

 Score =  140 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 73/348 (20%), Positives = 127/348 (36%), Gaps = 39/348 (11%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLG 66
           R + +       LRP  L++F GQ  A      L+  +EA +     +  ++  GPPG G
Sbjct: 57  RQMLEGKPLADRLRPDALQDFVGQGRAVGPETLLRSLLEANE-----VPSLILWGPPGCG 111

Query: 67  KTTLAQVVARELGVNFRST--SGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRL 117
           KTTLA ++A     +           AK  D+  ++   +        + +LFIDEIHR 
Sbjct: 112 KTTLAHIIANNSKKHSIRFVTLSATSAKTTDVRDVIKQAQNEKSFFKRKTILFIDEIHRF 171

Query: 118 SIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAA-----TTRVGLLTNPL 170
           +   ++   P +E   + L+    E PS +     LSR  +I          V +L   +
Sbjct: 172 NKSQQDTFLPHVECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAVVTILMRAI 231

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
               GI +  +    + L       +    + + D+A   +A  S G  R     L+   
Sbjct: 232 NS-LGIHVLDSSRPADPLSHSSN-SSSEPSVFIEDKAVDTLAHLSDGDARAGLNGLQLAV 289

Query: 231 ----DFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETIS 286
                  +V   KT         L+     K G  +  + Y      ++         IS
Sbjct: 290 LARLSARKVFGKKTGQTYPPGRVLVTEGDVKEGLQRSHILYDRAGEEHYNC-------IS 342

Query: 287 AGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           A     R + ++    ++ +       P    R L+  A + +G+  P
Sbjct: 343 ALHKAMRGSDQNAALYWLGRMLEGGEDPLYVARRLVRFASEDVGLADP 390


>gi|187922127|ref|YP_001893769.1| recombination factor protein RarA [Burkholderia phytofirmans PsJN]
 gi|187713321|gb|ACD14545.1| AAA ATPase central domain protein [Burkholderia phytofirmans PsJN]
          Length = 439

 Score =  140 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 82/345 (23%), Positives = 128/345 (37%), Gaps = 59/345 (17%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACS---NLKVFIEAAKARAEALDHVL 58
           M+   L +     +     LLRPRTL+EF GQ         L++  EA K     L   +
Sbjct: 1   MNLTDLFTT--KPKPPLAELLRPRTLDEFVGQRHLLGAGKPLRLAFEAGK-----LHSFI 53

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA-------ALLTNLEDRDVLFI 111
             GPPG+GKTTL ++ A      F + S  V+A   D+        A L N     VLF+
Sbjct: 54  LWGPPGVGKTTLGRLAASATDSRFIAISA-VLAGVKDIRQAIDEAQAELDNHGRSTVLFV 112

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DEIHR +   ++ L P +E   L L+    E P        LSR  +       G     
Sbjct: 113 DEIHRFNKAQQDALLPHVESGLLTLVGGTTEHPGLAVNSALLSRAQVYTLEPLSGDELQQ 172

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           L +R    ++                    G+ +  +A   +   + G  R    LL +V
Sbjct: 173 LYERARPHLQ--------------------GVTLDADALDLLKGFADGDGRRFLNLLEQV 212

Query: 230 RDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGL 289
            + A  A      + + DAA  R++                + R   GG      +SA  
Sbjct: 213 TNAASGAG-----KAVVDAAFARVSTSP------------SLRRFDKGGDEFYWQLSAFH 255

Query: 290 SEPRDAIEDLIEPYMIQQ--GFIQRTPRGRLLMPIAWQHLGIDIP 332
              R +  D    ++ +   G    +   R ++ +A + +G   P
Sbjct: 256 KSLRGSDPDAALYWLARILDGSGDVSQVTRRMVVMASEDIGNADP 300


>gi|227486699|ref|ZP_03917015.1| crossover junction endodeoxyribonuclease ATPase [Anaerococcus
           lactolyticus ATCC 51172]
 gi|227235287|gb|EEI85302.1| crossover junction endodeoxyribonuclease ATPase [Anaerococcus
           lactolyticus ATCC 51172]
          Length = 439

 Score =  140 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 77/347 (22%), Positives = 129/347 (37%), Gaps = 54/347 (15%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD   L  +   ++ A ++  LRP+T++ + GQ       K+     KA  + +  ++F 
Sbjct: 1   MDLFELNRKIEMEKSAPLADRLRPKTIDAYIGQDHLVGEGKIIRRMIKA--DRIYSMIFY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDE 113
           GPPG+GKTTLA++++    + F   S  V +  GDL   +   +D       + +LFIDE
Sbjct: 59  GPPGVGKTTLAKIISNSTHMAFEEVSA-VASGIGDLKEKIQIAKDNLAYENKKTILFIDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++ L P +ED  + L+    E P     K  +SR  +           + L 
Sbjct: 118 IHRFNKSQQDYLLPFVEDATIILIGATTENPYFEVNKALISRMYVFELKELTDKNLSDLI 177

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
           D       L     E LK           + + ++A  ++   S G  R     L  +  
Sbjct: 178 D-------LALSTDEVLKN--------KKIFLDEKARDKLIKYSNGDSRALLNALE-IAI 221

Query: 232 FAEVAHAKTITRE----IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISA 287
           F+E      I  +               DK G    D                   TISA
Sbjct: 222 FSENEKDGRIEIDSETIENSTTQKIAVYDKNGDRHYD-------------------TISA 262

Query: 288 GLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
            +   R +  D    Y+ +        +   R ++  A + +    P
Sbjct: 263 FIKSMRGSDIDASLYYLAKMLTSGEDIKFIARRMIIFAAEDISNADP 309


>gi|41407170|ref|NP_960006.1| recombination factor protein RarA [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41395521|gb|AAS03389.1| hypothetical protein MAP_1072 [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 450

 Score =  140 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 76/327 (23%), Positives = 129/327 (39%), Gaps = 61/327 (18%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            +RP +L+E  GQ    +         +    A    +  GPPG GKTTLA ++++  G 
Sbjct: 34  RMRPASLDEVVGQDHLLAPGSPLRRLVEGSGVA--SAILYGPPGSGKTTLAALISQATGR 91

Query: 81  NFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
            F + S  + A   D+ A++ +        ++ VLFIDE+HR S   ++ L  A+E+  +
Sbjct: 92  RFEALSA-LSAGVKDVRAVIESARTALLRGEQTVLFIDEVHRFSKTQQDALLSAVENRVV 150

Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            L+    E PS   V   LSR                      + ++L     +D++T+V
Sbjct: 151 LLVAATTENPSFSVVAPLLSR---------------------SLILQLRPLSADDIRTVV 189

Query: 193 QRGAKL-----TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           +R           + V  EA   +   + G  R A   L    +  E    +T+ + + +
Sbjct: 190 RRAIDDPRGLGGRVPVAPEAVDLLVRLAAGDARRALTALEVAAEAGESVTVQTVEQSLDE 249

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           AA   +  D+ G    D+                   ISA +   R +  D    Y+ + 
Sbjct: 250 AA---VRYDRDGDQHYDV-------------------ISAFIKSVRGSDVDAALHYLARM 287

Query: 308 GFIQRTPR--GRLLMPIAWQHLGIDIP 332
                 PR   R LM +A + +G+  P
Sbjct: 288 LVAGEDPRFIARRLMILASEDIGMADP 314


>gi|315444680|ref|YP_004077559.1| recombination protein MgsA [Mycobacterium sp. Spyr1]
 gi|315262983|gb|ADT99724.1| Recombination protein MgsA [Mycobacterium sp. Spyr1]
          Length = 446

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 78/323 (24%), Positives = 124/323 (38%), Gaps = 49/323 (15%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            +RP  L+E  GQ              +    A   V+  GPPG GKTTLA ++++  G 
Sbjct: 29  RMRPANLDEVVGQDHLLKPNSPLRRLIEGSGAA--SVILYGPPGTGKTTLASMISQATGR 86

Query: 81  NFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
            F + S        +    D+A       ++ VLFIDE+HR S   ++ L  A+E+  + 
Sbjct: 87  RFEALSALAAGVKEVRAVIDVARQAAVRGEQTVLFIDEVHRFSKTQQDALLAAVENRVVL 146

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           L+    E PS   V   LSR  ++           PL       +       E       
Sbjct: 147 LVAATTENPSFSVVAPLLSRSLILQL--------QPLTPADVTTVIRRAITDE------- 191

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           RG     + V+D+A  ++ + S G  R A   L  V         +T+T E+ + +L + 
Sbjct: 192 RGLGG-RVTVSDDAIEQLVLLSAGDARRALTALE-VATETVSESGETVTVEVIEQSLDKA 249

Query: 254 A--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
           A   D+ G    D+                   +SA +   R +  D    Y+ +     
Sbjct: 250 ALRYDRDGDQHYDV-------------------VSAFIKSVRGSDVDAALHYLARMLVAG 290

Query: 312 RTPR--GRLLMPIAWQHLGIDIP 332
             PR   R LM +A + +G+  P
Sbjct: 291 EDPRFVARRLMILASEDIGMADP 313


>gi|302382657|ref|YP_003818480.1| MgsA AAA+ ATPase-like protein [Brevundimonas subvibrioides ATCC
           15264]
 gi|302193285|gb|ADL00857.1| MgsA AAA+ ATPase-like protein [Brevundimonas subvibrioides ATCC
           15264]
          Length = 434

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 69/344 (20%), Positives = 119/344 (34%), Gaps = 58/344 (16%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M D     +  +   DA ++  LRP +L++  GQ              +A    L  ++ 
Sbjct: 1   MSDLFE--ASGIHPPDAPLADRLRPASLDQVVGQDHLLGEGGPIRRMIEA--GRLGSMIL 56

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEI 114
            GPPG GKTT+A+++A+  G  ++  S        + KA + A +        +LF+DEI
Sbjct: 57  WGPPGTGKTTIARLLAKAAGYQYQQISAVFSGVADLKKAFEQARVRRAAGQSTLLFVDEI 116

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++   P +E+  + L+    E PS       LSR  +           N L  
Sbjct: 117 HRFNRAQQDGFLPFVEEGVVTLVGATTENPSFELNGALLSRSQVFVLKRLDDAALNQLL- 175

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
                             I     +   L +T EA   +   + G  R    +   +   
Sbjct: 176 ------------------IRAEAEEGLPLPLTLEARQALLALADGDGRYLLTMAETLFAL 217

Query: 233 AEVAHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
                 + +  +   A L R A   DK   +  +L                   ISA   
Sbjct: 218 PP----EPLDVQALAATLQRRAPAYDKSREEHYNL-------------------ISALHK 254

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
             R +  D    ++ +       P    R ++ +A + +G   P
Sbjct: 255 SVRGSDPDAALYWLARMLNGGEDPLYLARRIVRMAVEDIGEADP 298


>gi|315645809|ref|ZP_07898930.1| AAA ATPase central domain protein [Paenibacillus vortex V453]
 gi|315278570|gb|EFU41884.1| AAA ATPase central domain protein [Paenibacillus vortex V453]
          Length = 435

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 60/285 (21%), Positives = 104/285 (36%), Gaps = 26/285 (9%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD   +              +RP +L+E+ GQ       K+   A +A  + +  +L  G
Sbjct: 1   MDLFSIGREGDRDSRLLADRMRPSSLDEYIGQEHIIGPGKLLRRAIEA--DQVSSILLYG 58

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEI 114
           PPG GKTTLA +++++   +F   +  V A   D+  ++   +        + +LF+DE+
Sbjct: 59  PPGCGKTTLAHIISQQTKGHFVRLNA-VEASVKDVREVIEQAQSNRSLYGTKTILFLDEV 117

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++ L PA+E+  +  +    E P        +SR TL            PL  
Sbjct: 118 HRFNSSRQDALLPAVENGTIIFIGATTENPFHYVNGALMSRSTLFQL--------QPLTK 169

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
              +         +D      +G     L   +EA   IA  + G  R A   L      
Sbjct: 170 EHSMIAMQRALADQD------KGLGFMDLRAEEEALDHIATMANGDIRRALNALELAAMT 223

Query: 233 AEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGG 277
                + TI   +  A            +      L+   ++  G
Sbjct: 224 TPPNASGTIHITLDVAEESIRRPIVRADESTQYDVLSAFHKSIRG 268


>gi|107102094|ref|ZP_01366012.1| hypothetical protein PaerPA_01003143 [Pseudomonas aeruginosa PACS2]
          Length = 425

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 74/326 (22%), Positives = 116/326 (35%), Gaps = 53/326 (16%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
             LLRP+TL+EF GQ       K    A +A    L   +  GPPG+GKTTL ++ A   
Sbjct: 2   AELLRPKTLDEFVGQRHLLGPGKPLRLAFEA--GKLHSFILWGPPGVGKTTLGRLAASAT 59

Query: 79  GVNFRSTSGPVIAKAGDLA-------ALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V+A   D+        A L N     VLF+DEIHR +   ++ L P +E 
Sbjct: 60  DSRFIAISA-VLAGVKDIRQAIDEAQAELDNHGRSTVLFVDEIHRFNKAQQDALLPHVES 118

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             L L+    E P        LSR  +                             ++L 
Sbjct: 119 GLLTLVGGTTEHPGLAVNSALLSRAQVYTL---------------------EPLSSDELN 157

Query: 190 TIVQRGAKLTG-LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
            + +R       + +  +A   +   + G  R    LL +V + A  + A     +   A
Sbjct: 158 QLYERALPHLQGVTLDADALDLLKGFADGDGRRFLNLLEQVTNAA--SGAGKTVVDGQSA 215

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ- 307
            L                    + R   GG      +SA     R +  D    ++ +  
Sbjct: 216 KLSTSP---------------SLRRFDKGGDEFYWQLSAFHKSLRGSDPDAALYWLARIL 260

Query: 308 -GFIQRTPRGRLLMPIAWQHLGIDIP 332
            G    +   R ++ +A + +G   P
Sbjct: 261 DGSGDVSQVTRRMVVVASEDIGNADP 286


>gi|307545643|ref|YP_003898122.1| recombination factor protein RarA [Halomonas elongata DSM 2581]
 gi|307217667|emb|CBV42937.1| recombination factor protein RarA [Halomonas elongata DSM 2581]
          Length = 446

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 82/338 (24%), Positives = 125/338 (36%), Gaps = 44/338 (13%)

Query: 7   LLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           L  +  S + A ++  +RPR L ++ GQ       K      +     +  ++  GPPG 
Sbjct: 3   LFQQATSDQHAPLAWRMRPRRLADYVGQQALVGPDKPVRRMVET--GTVRSMILWGPPGT 60

Query: 66  GKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GKTTLA+++A E G +    S        I +A D A +    +   +LF+DEIHRL+  
Sbjct: 61  GKTTLAEILAEESGAHLERLSAVMAGVKDIREAVDRARVAQGQDRGTLLFLDEIHRLNKS 120

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++ L P +E   L L+    E PS       LSR  +         +   L D   + +
Sbjct: 121 QQDALLPHVESGLLTLIGATTENPSFEVNSALLSRARV--------HVLKALTDDDVVEV 172

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
                  E       RG     +AV DE    +A  + G  R A  LL    DF E    
Sbjct: 173 LRRALADE------TRGLGARRIAVDDEVLNLLARAAAGDARRALGLLETACDFTEPEGN 226

Query: 239 KTITREIADAALLRLAIDKM-GFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
                 +   AL  +   +   FD+    Y               + +SA     R +  
Sbjct: 227 GER---LPREALEDVIGHQASAFDKQGDHY--------------YDLLSAIHKSVRSSRP 269

Query: 298 DLIEPYMIQQGFIQRTPRG--RLLMPIAWQHLGIDIPH 333
           D    Y+ +       P    R L  IA + +G   P 
Sbjct: 270 DAALLYIARFMQGGGDPLDVIRRLTAIASEDVGNADPR 307


>gi|189501780|ref|YP_001957497.1| hypothetical protein Aasi_0336 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497221|gb|ACE05768.1| hypothetical protein Aasi_0336 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 431

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 73/341 (21%), Positives = 119/341 (34%), Gaps = 62/341 (18%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEA---CSNLKVFIEAAKARAEALDHVLFVGPP 63
           L S+N    +   S LRP++L E  GQ         L V  ++ +     L  ++  GPP
Sbjct: 4   LFSQN--SYEPLASRLRPQSLNEIVGQEHLTEGKGPLGVMRKSGQ-----LSSLILWGPP 56

Query: 64  GLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
           G GKTTLA+++A+   + F   S        + K  + A     +    +LF+DEIHR +
Sbjct: 57  GCGKTTLARLLAKTSDLEFEPISAIESGVADLKKVFERAQERKKMGRGTLLFVDEIHRFN 116

Query: 119 IIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
              ++   P +E+  + L+    E PS       LSR  ++            L  R   
Sbjct: 117 RTQQDSFLPHVENGTVILIGATTENPSFELNSALLSRTQVLVLRRLESSHLEILYQR--- 173

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
               ++ E E    +  R   L  +A  D  A                L   +   +++ 
Sbjct: 174 --AQSYLEKELPLDVAGRAL-LYAMADGDGRA----------------LYNMIEVLSQLP 214

Query: 237 HAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRD 294
               ++ E     L R A   DK      +L                   ISA     R 
Sbjct: 215 SRPILSVEDLTQVLSRRAPLYDKNKEGHYNL-------------------ISALHKSLRG 255

Query: 295 AIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +  D    +  +       P    R L+  A + +G+  P 
Sbjct: 256 SDPDAALYWFARMLEGGEDPLYIARRLIRFASEDVGLSDPQ 296


>gi|209963765|ref|YP_002296680.1| recombination factor protein RarA [Rhodospirillum centenum SW]
 gi|209957231|gb|ACI97867.1| ATPase, AAA family [Rhodospirillum centenum SW]
          Length = 432

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 72/334 (21%), Positives = 110/334 (32%), Gaps = 54/334 (16%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
                      LRPR LEE  GQ    +         KAR   L  ++  GPPG GKTT+
Sbjct: 7   EDQAPRPLADRLRPRRLEEVVGQEHLLAPEGPVGRQVKAR--RLTSMILWGPPGCGKTTI 64

Query: 71  AQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           A+++A+   ++F   S        + K  + A     +    +LFIDEIHR +   ++  
Sbjct: 65  ARLLAQSTDLHFEPLSAVFSGVADLRKVFEAAKARRAMGQGTLLFIDEIHRFNRSQQDGF 124

Query: 126 YPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
            P +ED  + L+    E PS       LSR                          LN  
Sbjct: 125 LPYVEDGTVTLVGATTENPSFELNAALLSR---------------------AQVFVLNRL 163

Query: 184 EIEDLKTIVQRGAKL--TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +   L+ ++QR        L + ++A   +   + G  R    L   +    +     T 
Sbjct: 164 DEAALEKLLQRAEAETGRPLPLDEDARLALKAMADGDGRYCLNLCEELFQLPDGTALDTT 223

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
               A         DK      +L                   ISA     R +  D   
Sbjct: 224 GLTAAVQ-RRMPLYDKAQEGHYNL-------------------ISALHKSLRGSDTDAAL 263

Query: 302 PYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +  +       PR   R L   A + +G+  P 
Sbjct: 264 YWFARMLAGGEDPRYIARRLCRFAVEDVGLADPQ 297


>gi|325478638|gb|EGC81750.1| ATPase, AAA family [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 439

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 73/344 (21%), Positives = 126/344 (36%), Gaps = 46/344 (13%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD   L      ++ A ++  LRP+ L+E+ GQ       K+     KA  + +   +F 
Sbjct: 1   MDLFELNRIRELEKSAPLADRLRPKNLDEYIGQEHLVGEGKIINRMIKA--DRIYSCIFY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDE 113
           GPPG+GKT+LA++++ +  + F   S  V +   DL   +   +D       + +LFIDE
Sbjct: 59  GPPGVGKTSLAKIISEKTNMAFEEISA-VASGISDLKKKVQIAKDNLSFENKKTILFIDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++ L P +ED  + L+    E P     K  +SR  +        L    L 
Sbjct: 118 IHRFNKSQQDYLLPFVEDSTITLIGATTENPYFEINKALISRMYVFELKELSDLDLEKLI 177

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
           D               +        K   + + +EA   +   S G  R     L  +  
Sbjct: 178 D---------------MALSKDEILKGKNIEINEEARKTLISYSNGDSRALLNALE-IAI 221

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
           F+E      I  + +           +     D  Y               +T SA +  
Sbjct: 222 FSEDEKDGRIVIDKSTIENSTQKKISIYDKNGDRHY---------------DTTSAFIKS 266

Query: 292 PRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            R +  D    Y+ +        +   R ++  A + +G   P+
Sbjct: 267 MRGSDIDASLYYLAKMIESGEDIKFIARRMIIFASEDIGNADPN 310


>gi|32475212|ref|NP_868206.1| recombination factor protein RarA [Rhodopirellula baltica SH 1]
 gi|32445753|emb|CAD78484.1| conserved hypothetical protein-putative a helicase [Rhodopirellula
           baltica SH 1]
          Length = 439

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 68/329 (20%), Positives = 114/329 (34%), Gaps = 48/329 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP+ L EF GQ       K+        +  +  +L  GPPG GKTTLA ++A 
Sbjct: 17  PLAARMRPKKLSEFVGQQHILGEGKLLRRLI--ASGRVGSILLHGPPGTGKTTLAHLIAS 74

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAM 129
           E      + +  + +   D+  +L    D       R +LFIDEIHR +   ++ L   +
Sbjct: 75  EQNSELITLNA-ISSGVKDVREVLAKARDRVSAGDPRPLLFIDEIHRFNKSQQDALLADV 133

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E   + L+      P        +SR  L             L  R              
Sbjct: 134 ESGIISLIGATTSNPYFAVNAALISRSQLFGLEPVSVEDMRSLLKR-------------- 179

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
             T  + G     + + ++A   ++  S G  R A   L       E   A     ++A+
Sbjct: 180 AITDRECGLGNQNVTIDEDAIDYLSSASDGDARKALTALEVAVHSHENPKASITRDDVAE 239

Query: 248 AALLRL-AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           +   R+   D  G D  DL   + + ++  G  V                 D    ++ +
Sbjct: 240 SMTSRIAGYDATGDDHYDLA--SALIKSIRGSDV-----------------DASLYWLAR 280

Query: 307 QGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                   R   R L+ +A + +G   P 
Sbjct: 281 MLEGGEDIRFLCRRLVILASEDIGNADPQ 309


>gi|326382142|ref|ZP_08203834.1| recombination factor protein RarA [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326198872|gb|EGD56054.1| recombination factor protein RarA [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 453

 Score =  139 bits (351), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 78/337 (23%), Positives = 123/337 (36%), Gaps = 54/337 (16%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACS---NLKVFIEAAKARAEALDHVLFVGPPGL 65
           S +          +RP +L+E  GQ         L+  I  + A       VL  GPPG 
Sbjct: 18  SVDGKPAPPLAVRMRPSSLDEIVGQQHLLGDRSPLRRLIAGSGAA-----SVLLYGPPGT 72

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSI 119
           GKTT+A ++++  G  F + S  + A   ++ A++     R       VLFIDE+HR S 
Sbjct: 73  GKTTMASLISQATGGRFEALSA-LSAGVKEVRAVIDVARRRLAQGQQTVLFIDEVHRFSK 131

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             ++ L  A+E+  + L+    E PS   V   LSR  ++   +        +  R    
Sbjct: 132 TQQDALLDAVENRIVLLVAATTENPSFSVVAPLLSRSLVLQLRSLTEEDVEAVLRR---- 187

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                        I  RG     ++++DEAA  +   + G  R A   L    D  E   
Sbjct: 188 -----------AVIDPRGLNG-AVSLSDEAARHLVAVAGGDARRALTALEASADATEAGG 235

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
              +    A      +  D+ G    D+                    SA +   R +  
Sbjct: 236 VIEVADVEAAIDRAAVRYDRDGDQHYDV-------------------TSAFIKSIRGSDV 276

Query: 298 DLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           D    Y+ +       PR   R LM  A + +G+  P
Sbjct: 277 DAALHYLARMISAGEDPRFIARRLMIHASEDIGMADP 313


>gi|281490561|ref|YP_003352541.1| chromosome segregation helicase [Lactococcus lactis subsp. lactis
           KF147]
 gi|281374379|gb|ADA63912.1| Chromosome segregation helicase, ATPase, AAA family [Lactococcus
           lactis subsp. lactis KF147]
          Length = 419

 Score =  139 bits (351), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 72/321 (22%), Positives = 125/321 (38%), Gaps = 45/321 (14%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +RPR ++E  GQ       K+     + +   L  ++  GPPG+GKT++A  +A  +
Sbjct: 6   ARRMRPRNIDEIVGQKHLVGKGKIIRRMVETQ--LLSSMILYGPPGIGKTSIASAIAGTM 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
            V FR+ +     K   L  + +  E   + VL +DEIHRL    ++ L P +E+ Q+ L
Sbjct: 64  NVAFRTFNATTDTKKR-LQEIASEAEFSGQLVLLLDEIHRLDKPKQDFLLPLLENGQIIL 122

Query: 137 M--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           +    E P    V    SR  +            P    F + + L            +R
Sbjct: 123 IGATTENPYFSVVPAIRSRVQIFELKPL-----EPEDLEFAVNLSLQ---------DKER 168

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
           G     + + D+A   +   + G  R     L      +E  H   +T +  + +L R A
Sbjct: 169 GFD-FDVTIDDDALYFLIHSTNGDLRSTFNALELAVLSSEEHH---VTLDDMENSLQRKA 224

Query: 255 --IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
              DK G    D   L+ + ++  G  V              ++       +I+ G +Q 
Sbjct: 225 ATFDKDGDAHYD--LLSALQKSIRGSDV------------NASLHYAAR--LIEGGDLQ- 267

Query: 313 TPRGRLLMPIAWQHLGIDIPH 333
               R L  +A++ +G+  P 
Sbjct: 268 -SLARRLTVMAYEDIGLANPD 287


>gi|145224348|ref|YP_001135026.1| recombination factor protein RarA [Mycobacterium gilvum PYR-GCK]
 gi|145216834|gb|ABP46238.1| Recombination protein MgsA [Mycobacterium gilvum PYR-GCK]
          Length = 446

 Score =  139 bits (351), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 78/323 (24%), Positives = 124/323 (38%), Gaps = 49/323 (15%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            +RP  L+E  GQ              +    A   V+  GPPG GKTTLA ++++  G 
Sbjct: 29  RMRPANLDEVVGQDHLLKPNSPLRRLIEGSGAA--SVILYGPPGTGKTTLASMISQATGR 86

Query: 81  NFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
            F + S        +    D+A       ++ VLFIDE+HR S   ++ L  A+E+  + 
Sbjct: 87  RFEALSALAAGVKEVRAVIDVARQAAVRGEQTVLFIDEVHRFSKTQQDALLAAVENRVVL 146

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           L+    E PS   V   LSR  ++           PL       +       E       
Sbjct: 147 LVAATTENPSFSVVAPLLSRSLILQL--------QPLTPADVTTVIRRAITDE------- 191

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           RG     + V+D+A  ++ + S G  R A   L  V         +T+T E+ + +L + 
Sbjct: 192 RGLGG-RVTVSDDAIEQLVLLSAGDARRALTALE-VATETVSESGETVTVEVIEQSLDKA 249

Query: 254 A--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
           A   D+ G    D+                   +SA +   R +  D    Y+ +     
Sbjct: 250 ALRYDRDGDQHYDV-------------------VSAFIKSVRGSDVDAALHYLARMLVAG 290

Query: 312 RTPR--GRLLMPIAWQHLGIDIP 332
             PR   R LM +A + +G+  P
Sbjct: 291 EDPRFVARRLMILASEDIGMADP 313


>gi|254442732|ref|ZP_05056208.1| ATPase, AAA family protein [Verrucomicrobiae bacterium DG1235]
 gi|198257040|gb|EDY81348.1| ATPase, AAA family protein [Verrucomicrobiae bacterium DG1235]
          Length = 496

 Score =  139 bits (351), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 75/356 (21%), Positives = 118/356 (33%), Gaps = 66/356 (18%)

Query: 1   MMDREGLLSRNV------------SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAK 48
           M D+  L                 ++     + LRPR+L E  GQ    +  K+     +
Sbjct: 47  MDDQSSLFGEEEEVTLRESAGERSNKRQPLAARLRPRSLSEVVGQEHILAPGKLLPRLVE 106

Query: 49  ARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALL---TNLED 105
           A       +LF GPPG GKT++A+ +A E    F   +  V++   +L  +L     +ED
Sbjct: 107 A--NTFGSLLFYGPPGCGKTSMAEAIAGETKSRFVRINA-VMSNVAELREILGIARRMED 163

Query: 106 R-DVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLS-----RFTLI 157
           +  VLFIDEIHR +   +++L P +E   + L+      P        LS     R    
Sbjct: 164 KDTVLFIDEIHRFNKSQQDLLLPDVEAGNIRLIGATTHNPGFYVNAPLLSRSHLFRLNPH 223

Query: 158 AATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRG 217
              T    L   L D                    +RG     +         +A    G
Sbjct: 224 DVDTVAATLAKALTDE-------------------ERGLGERKITAVAGVLEGLAKLCDG 264

Query: 218 TPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGG 277
             R     L  +    E     T       A+  ++  D    +  D             
Sbjct: 265 DLRRGLNALEVIAMGLEEGGEITEESVGVFASERQIRYDADEDEHYD------------- 311

Query: 278 GPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
                 TISA +   R    D    ++ +       PR   R L+  A + +G+  
Sbjct: 312 ------TISAFIKSMRGGSPDGALYWLAKMLKGGEDPRFIARRLVVFASEDVGLAD 361


>gi|120403620|ref|YP_953449.1| recombination factor protein RarA [Mycobacterium vanbaalenii PYR-1]
 gi|119956438|gb|ABM13443.1| Recombination protein MgsA [Mycobacterium vanbaalenii PYR-1]
          Length = 429

 Score =  139 bits (351), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 79/326 (24%), Positives = 128/326 (39%), Gaps = 59/326 (18%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            +RP +L+E  GQ              +    A   V+  GPPG GKTTLA ++++  G 
Sbjct: 16  RMRPASLDEVVGQGHLLKPNSPLRRLIEGSGAA--SVILYGPPGTGKTTLASMISQATGR 73

Query: 81  NFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
            F + S        +    D+A   +   ++ VLFIDE+HR S   ++ L  A+E+  + 
Sbjct: 74  RFEALSALAAGVKEVRAVIDVARQASMRGEQTVLFIDEVHRFSKTQQDALLAAVENRVVL 133

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           L+    E PS   V   LSR                      + ++L     ED+ T+++
Sbjct: 134 LVAATTENPSFSVVAPLLSR---------------------SLILQLQPLTPEDVTTVIR 172

Query: 194 RGAKL-----TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           R  +        +AVTDEA  ++   S G  R A   L    +  E    + I + +  A
Sbjct: 173 RAIEDPRGLGGKVAVTDEAVDQLVQLSAGDARRALTALEVASESGEEVTVEVIEQSLDKA 232

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           A   +  D+ G    D+                   +SA +   R +  D    Y+ +  
Sbjct: 233 A---VRYDRDGDQHYDV-------------------VSAFIKSVRGSDVDAALHYLARML 270

Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIP 332
                PR   R LM +A + +G+  P
Sbjct: 271 VAGEDPRFVARRLMILASEDIGMADP 296


>gi|315101311|gb|EFT73287.1| recombination factor protein RarA [Propionibacterium acnes
           HL046PA1]
          Length = 462

 Score =  139 bits (351), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 87/337 (25%), Positives = 131/337 (38%), Gaps = 47/337 (13%)

Query: 9   SRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           S +    DA ++  LRPRT++E  GQ    +        A+        V   GPPG+GK
Sbjct: 22  SLDTPNPDAPLAVRLRPRTIDEIVGQQHLLTPGSPLRRLAEGTGAM--SVFLWGPPGVGK 79

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIV 121
           TT+A VV+      F   S  V A   D+   L     +       VLF+DE+HR S   
Sbjct: 80  TTIASVVSHATNRRFVEISA-VTAGVKDIRRELDTARRQLALGQPTVLFVDEVHRFSKAQ 138

Query: 122 EEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +++L PA+E+  + L+    E PS   +   LSR  L+          + L DR      
Sbjct: 139 QDVLLPAVENRTVTLIAATTENPSFSVISPLLSRSLLLTLKPLTEADVSSLLDR------ 192

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
               +   L+T   R        + D+A  ++   + G  R A   L      A  A   
Sbjct: 193 -ALSDPRGLRTESDR-----RYVLEDDARADLLQLAAGDARRALTYLEEAAAGASAAGTD 246

Query: 240 TITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
           TIT +I   A+ R A   D+ G    D+                   ISA +   R +  
Sbjct: 247 TITSQIVSTAVDRAAVRYDRDGDQHYDV-------------------ISAFIKSVRGSDV 287

Query: 298 DLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           D    Y+ +       PR   R L+ +A + +G+  P
Sbjct: 288 DAALHYLARMIEAGEDPRFIARRLIILASEDIGMAAP 324


>gi|257469472|ref|ZP_05633564.1| recombination factor protein RarA [Fusobacterium ulcerans ATCC
           49185]
 gi|317063716|ref|ZP_07928201.1| ATPase [Fusobacterium ulcerans ATCC 49185]
 gi|313689392|gb|EFS26227.1| ATPase [Fusobacterium ulcerans ATCC 49185]
          Length = 409

 Score =  139 bits (351), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 69/341 (20%), Positives = 126/341 (36%), Gaps = 60/341 (17%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            L   N  +       LRP  L++F GQ +      V  +  + ++  + + +F GPPG 
Sbjct: 2   NLFESNYDKIKPLALRLRPTNLDDFIGQEKILGKGGVLRKLIEKQS--ISNSIFFGPPGC 59

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLS 118
           GK++L +++++ L  NF + +  V A   DL  ++   +        + +LF+DEIHR +
Sbjct: 60  GKSSLGEIISKTLDSNFETLNATV-ASLNDLREIVEKAKKNLEFYGKKTILFLDEIHRFN 118

Query: 119 IIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
            + ++ L    E   L L+    E P        LSR                      +
Sbjct: 119 KLQQDALLSYCESGILTLIGATTENPYYSLNNALLSRV---------------------M 157

Query: 177 PIRLNFYEIEDLKTIVQRGAKL--TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
                    ++++ I+++G K       ++ E    I   S+G  RIA   L   ++   
Sbjct: 158 IFEFKSLSRDNIREILEKGVKYIGLEEKISKEVIECILDISQGDSRIAINYLELYQNSC- 216

Query: 235 VAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRD 294
                    E+ D    R +      D+ +L                   ISA +   R 
Sbjct: 217 ---MDLEDEEVLDIFRQRQSSYHKAEDKYNL-------------------ISALIKSMRG 254

Query: 295 AIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +  D    ++ +       PR   R +M  A + +G+  P 
Sbjct: 255 SDPDAALYWLGRLLHGGEDPRYIARRIMIHASEDVGMANPE 295


>gi|313114009|ref|ZP_07799564.1| recombination factor protein RarA [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310623711|gb|EFQ07111.1| recombination factor protein RarA [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 445

 Score =  139 bits (351), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 74/342 (21%), Positives = 129/342 (37%), Gaps = 48/342 (14%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           +R  +     +  +     LRP+TL +  GQ    +  +VF    +  +  + +++F GP
Sbjct: 11  NRASVREEENTMNEPLAQRLRPKTLADVCGQQHLLAPGRVFRRTIE--SGRIPNMIFYGP 68

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-----DRDVLFIDEIHRL 117
            G GKTT+A+++A   G+     +G      GD+ A+L ++         +L++DEI  L
Sbjct: 69  SGTGKTTVARIIAENSGMTLHKLNG-TSCGTGDIKAVLKDIGTLAGAGGILLYLDEIQYL 127

Query: 118 SIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
           +   ++ L   +ED  + L+    E P        LSR T+    +    L+    +R  
Sbjct: 128 NKKQQQSLLECIEDGSVTLIASTTENPYFYIYNALLSRCTVFEFKS----LSAADVERGV 183

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
                   E E  K           + + ++A   +A  + G  R A   L      A +
Sbjct: 184 HNALKKLSEGESTK-----------VCMDEDACAYLAESAGGDLRKALGCLDFAVTAAPI 232

Query: 236 A-HAKTITREIADAALLR--LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEP 292
               K IT E+      R  +  D+ G D  D+                   +SA     
Sbjct: 233 EDGEKHITLEMIQQVTRRTAMRYDREGDDHYDI-------------------VSAYQKSM 273

Query: 293 RDAIEDLIEPYMIQQGFIQRTPRG-RLLMPIAWQHLGIDIPH 333
           R +  D    Y+ +       P   R LM  A + +G+  P 
Sbjct: 274 RGSDPDAALHYLARLLEAGDLPSACRRLMVCACEDVGLAYPQ 315


>gi|92117125|ref|YP_576854.1| recombination factor protein RarA [Nitrobacter hamburgensis X14]
 gi|91800019|gb|ABE62394.1| Recombination protein MgsA [Nitrobacter hamburgensis X14]
          Length = 446

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 73/347 (21%), Positives = 120/347 (34%), Gaps = 60/347 (17%)

Query: 3   DREGLLSRNVSQEDADIS---LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           + + L +    + DA       LRPR L +  GQ              + R      ++F
Sbjct: 8   ESKSLFAAAGLERDAPHPLPDRLRPRALSDVVGQDHILGPDGALTRMLETR--TFGSLVF 65

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEI 114
            GPPG GKTT+A+++A    ++F   S        + KA D A          +LF+DE+
Sbjct: 66  WGPPGTGKTTVARLLADATALHFEQLSAVFSGVADLKKAFDAARARRESGTGTLLFVDEV 125

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++   P MED  + L+    E PS       LSR  ++   +           
Sbjct: 126 HRFNKAQQDSFLPVMEDGTVVLVGATTENPSFELNAALLSRARVLVFRS----------- 174

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLT--GLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
                      +   ++ +  R  ++    L +  EA   +   + G  R A  L+  V 
Sbjct: 175 ----------LDAAAIEKLFVRAEQVEGKPLPLDTEARSVLVRMADGDGRAALTLVEEVW 224

Query: 231 DFAEVAHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAG 288
             A     +    E     L R A   DK      +L                   ISA 
Sbjct: 225 RSA--REGEVFDAEQLQGVLQRRAPIYDKSADGHYNL-------------------ISAL 263

Query: 289 LSEPRDAIEDLIEPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
               R +  D    Y+ +       P    R ++ +A + +G+  P 
Sbjct: 264 HKSVRGSDPDAALYYLARMFQAGEDPLFLARRVVRMAVEDIGLADPQ 310


>gi|260578811|ref|ZP_05846718.1| AAA family ATPase [Corynebacterium jeikeium ATCC 43734]
 gi|258603109|gb|EEW16379.1| AAA family ATPase [Corynebacterium jeikeium ATCC 43734]
          Length = 464

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 68/323 (21%), Positives = 117/323 (36%), Gaps = 43/323 (13%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            +RPR+L+E  GQ +                +    V+  GPPG GKTT+A ++++  G 
Sbjct: 40  RMRPRSLDEVVGQDKVLGPGSPLRRLIDGHGDT--SVILYGPPGTGKTTIASLISQASGR 97

Query: 81  NFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQL 134
            F + S  + +   ++ A++     R       VLFIDE+HR S   ++ L  A+E+  +
Sbjct: 98  RFEALSA-LNSGVKEVRAIIEQARKRLVLGEHTVLFIDEVHRFSKTQQDALLSAVENRTV 156

Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            L+    E PS   V                    +PL  R  +    +  + + ++T++
Sbjct: 157 LLVAATTENPSFSVV--------------------SPLLSRSLLVQLSSLSDAD-IRTVL 195

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           QR                 +        +A    RR   + E A            A L 
Sbjct: 196 QRALD--DERGYAGRLRVTSEAMDQLVAMAAGDARRSLTYLEAAAEGVEPDGENGVAELV 253

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
            +  K   +         +AR    G    +  SA +   R +  D    Y+ +      
Sbjct: 254 ASQVKKSLN-------KAVARYDRDGDQHYDITSAFIKSIRGSDPDAALHYLARMLEGGE 306

Query: 313 TPR--GRLLMPIAWQHLGIDIPH 333
            PR   R L+  A + +G+  P 
Sbjct: 307 DPRFIARRLVIHASEDIGMADPQ 329


>gi|194468283|ref|ZP_03074269.1| AAA ATPase central domain protein [Lactobacillus reuteri 100-23]
 gi|194453136|gb|EDX42034.1| AAA ATPase central domain protein [Lactobacillus reuteri 100-23]
          Length = 434

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 71/319 (22%), Positives = 124/319 (38%), Gaps = 37/319 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RPRTL+E  GQ       K+     KA+   L  ++  GPPG GKT++A  +A 
Sbjct: 4   PLAYRMRPRTLDEVVGQQHLVGPGKIISRMVKAK--MLSSMILYGPPGTGKTSIASAIAG 61

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR  +     K    + A    +    +L +DEIHRL    ++ L P +E+ ++ 
Sbjct: 62  STKYAFRKLNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKGKQDFLLPHLENGRI- 120

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           +++G       + IN +    I + T++  +     D   I I+    + E       RG
Sbjct: 121 ILIGATTENPYISINPA----IRSRTQIFPVHPLSTDEMKIAIQHALVDKE-------RG 169

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI--TREIADAALLRL 253
                L + + A  ++   + G  R A   L       + +    I  T  I + ++ + 
Sbjct: 170 LGNLPLVLEENAEDQLVAATNGDLRSALNGLELAAKSTDPSEDGKIHLTLPIIEESVQKK 229

Query: 254 AI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
           A+  DK G    D      +   F     G +T +A                +I+ G + 
Sbjct: 230 ALSADKDGDAHYD------VISAFQKSIRGSDTDAALH----------YLARLIEAGDLP 273

Query: 312 RTPRGRLLMPIAWQHLGID 330
                R LM  A++ +G+ 
Sbjct: 274 II--ARRLMVTAYEDIGLA 290


>gi|121998175|ref|YP_001002962.1| recombination factor protein RarA [Halorhodospira halophila SL1]
 gi|121589580|gb|ABM62160.1| Recombination protein MgsA [Halorhodospira halophila SL1]
          Length = 427

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 74/327 (22%), Positives = 115/327 (35%), Gaps = 47/327 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RPR++EE  GQ       +   ++  A       ++  GPPG GKTTLA +VA 
Sbjct: 8   PLAERMRPRSIEEMAGQGHLLDTGRALAQSVAA--GRPHSMILWGPPGSGKTTLAGLVAE 65

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLT------NLEDRDVLFIDEIHRLSIIVEEILYPAME 130
                F + S  V A   ++ A +           R VLF+DE+HR +   ++   P +E
Sbjct: 66  HAEARFLTLSA-VAAGVREIRAAMAEATDLWQAGRRTVLFVDEVHRFNKAQQDAFLPHVE 124

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           D  +  +    E PS    K  LSR  +             L +R               
Sbjct: 125 DGTVVFVGATTENPSFELNKALLSRARVYMLRALDEAALTNLLER--------------A 170

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
            +  +RG     L VT+ A   +   + G  R     L    D AE   +  +  E+   
Sbjct: 171 LSDPERGLGGRQLQVTEAARALLLRAADGDARRLLSALEIAADLAE---SGVLDAEVVTE 227

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           A+   A                  R   GG    + ISA     R +  D    ++ +  
Sbjct: 228 AVAGGA-----------------RRFDKGGDDFYDQISALHKSIRGSDPDAALYWLARML 270

Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIPH 333
                P    R L+ +A + +G   P 
Sbjct: 271 DGGCDPLYIARRLIRVASEDIGNADPR 297


>gi|70993728|ref|XP_751711.1| AAA family ATPase [Aspergillus fumigatus Af293]
 gi|66849345|gb|EAL89673.1| AAA family ATPase, putative [Aspergillus fumigatus Af293]
 gi|159125367|gb|EDP50484.1| AAA family ATPase, putative [Aspergillus fumigatus A1163]
          Length = 539

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 76/328 (23%), Positives = 119/328 (36%), Gaps = 55/328 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEAC--SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
                +RPRTL+E  GQ        L+  IE      + +  ++  G  G GKTT+A+V+
Sbjct: 121 PLAERMRPRTLDEVCGQELVGPNGVLRGLIE-----QDRVPSMILWGHAGTGKTTIARVI 175

Query: 75  ARELGVNF---RSTSGPVIAKAGDLAALLTNLE---DRDVLFIDEIHRLSIIVEEILYPA 128
           A  +G  F    STS  V       A   + L     + ++F DEIHR S   +++    
Sbjct: 176 ASMVGSRFVEINSTSTGVAECKKIFAEARSELGLTGRKTIVFCDEIHRFSKSQQDVFLGP 235

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           +E  Q+ L+    E PS +     LSR      +         + DR  + +    Y   
Sbjct: 236 VESGQITLIGATTENPSFKVQNALLSRCRTFTLSKLSDEDVKSILDR-ALRVEGPNYSPS 294

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
            L              V DE    +A  S G  R +  LL    D +      ++T+E  
Sbjct: 295 SL--------------VDDELIEYLARFSDGDARTSLNLLELAMDLS---KRPSMTKEEL 337

Query: 247 DAALLRL-AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
             +L +    D+ G    D                   TISA     R +  D    Y+ 
Sbjct: 338 KRSLTKTLVYDRAGDQHYD-------------------TISAFHKSIRGSDPDAALYYLA 378

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDI 331
           +       P    R L+ +A + +G+  
Sbjct: 379 RMLQSGEDPLYIARRLVVVASEDIGLAD 406


>gi|300934544|ref|ZP_07149800.1| recombination factor protein RarA [Corynebacterium resistens DSM
           45100]
          Length = 545

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 75/359 (20%), Positives = 127/359 (35%), Gaps = 52/359 (14%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            +RPR+L+E  GQ EA           + R +    V+  GPPG GKTT+A +++     
Sbjct: 60  RMRPRSLDEVVGQKEALGAGSPLRRLIEGRGD--SSVILYGPPGTGKTTIASLISAASDR 117

Query: 81  NFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           +F + S  + +   ++ A++ N   R       VLFIDE+HR S   ++ L  A+E+  +
Sbjct: 118 HFEALSA-LNSGVKEVRAVIDNARQRLIHGRATVLFIDEVHRFSKTQQDALLSAVENRTV 176

Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATT-----RVGLLTNPLQDRFGIPIRLNFYEIED 187
            L+    E PS   V   LSR  L+   +        +LT  ++D  G   ++     + 
Sbjct: 177 LLVAATTENPSFSVVAPLLSRSLLVQLHSLTDEDIATVLTRAVEDPRGFGSKVRL-SSDA 235

Query: 188 LKTIV-------QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           L  +V       +R       A     A   A  S    R         ++         
Sbjct: 236 LSQLVALSAGDARRSLTYLEAAAESVLAD-NAAHSGRDSRGDSARGGNAKEPETANGGDA 294

Query: 241 ITREIADAALLRLAIDKMG-------------------------FDQLDLRYLTMIARNF 275
              E A+        + +G                          + +       + R  
Sbjct: 295 KEPETANGGAGGKGNEGVGAQRSAKGGVARGGEQEIATNQPVITLEDIKRSITKAVVRYD 354

Query: 276 GGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
             G    +  SA +   R +  D    Y+ +       PR   R L+  A + +G+  P
Sbjct: 355 RDGDQHYDITSAFIKSIRGSDPDAALHYLARMIAAGEDPRFIARRLVIHASEDIGMADP 413


>gi|326798773|ref|YP_004316592.1| ATPase AAA [Sphingobacterium sp. 21]
 gi|326549537|gb|ADZ77922.1| AAA ATPase central domain protein [Sphingobacterium sp. 21]
          Length = 426

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 66/329 (20%), Positives = 118/329 (35%), Gaps = 51/329 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP  + ++ GQ        V   + ++    L  ++  GPPG+GKTTLA ++++
Sbjct: 6   PLAERMRPENINDYVGQYHLLGPDAVLRRSIESNN--LPSMILWGPPGVGKTTLAYIISK 63

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAM 129
            L   F + S  + A   D+  ++          +D+ +LFIDEIHR S   ++ L  A+
Sbjct: 64  RLNRPFFNLSA-INAGVKDVREVIEQANLSKAMFQDQPILFIDEIHRFSKSQQDSLLSAV 122

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E   + L+    E PS   +   LSR  +            PL +   + +       + 
Sbjct: 123 ERGLVTLIGATTENPSFEVISALLSRCQVYTL--------KPLDESDLVTLLQKALANDP 174

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD-FAEVAHAKTITREIA 246
           +        K   + + +  A      S G  R    +L  V +   E  H       + 
Sbjct: 175 V-------LKEKKIIIDEHEALLRI--SGGDARKLLNVLELVSNALPEGNHHINNEFVLK 225

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
                    DK G    D+                   ISA +   R +  +    ++ +
Sbjct: 226 QVQQNMALYDKAGEQHYDI-------------------ISAFIKSIRGSDPNAAVYWLAR 266

Query: 307 QGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                  P    R L+ +A + +G   P+
Sbjct: 267 MIEGGEDPSFIARRLLILASEDIGNANPN 295


>gi|322374037|ref|ZP_08048571.1| ATPase, AAA family [Streptococcus sp. C150]
 gi|321277003|gb|EFX54074.1| ATPase, AAA family [Streptococcus sp. C150]
          Length = 422

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 71/331 (21%), Positives = 123/331 (37%), Gaps = 52/331 (15%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            D     +RPRT+ E  GQ       K+     +A    L  ++  GPPG+GKT++A  +
Sbjct: 2   PDNLALRMRPRTISEVIGQKHLVGKGKIIRRMVEA--NMLSSMILYGPPGIGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           A      FR+ +  V +K      A         VL +DEIHRL    ++ L P +E+ +
Sbjct: 60  AGTTKFAFRTFNATVDSKKRLQEIAEEAKFSGGLVLLLDEIHRLDKAKQDFLLPLLENGK 119

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAA-----TTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           + ++    E P         SR  +        T     +   L+DR             
Sbjct: 120 IIMIGATTENPFFSVTPAIRSRVQIFELEPLSNTDIKVAIQGVLEDR------------- 166

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE--VAHAKTITRE 244
                 +RG     + + D+A   IA  + G  R A   L       +      + +T +
Sbjct: 167 ------ERGFD-FDVQLDDDALDFIATATNGDLRSAYNSLDLAVMSTQPSEGGERHVTLD 219

Query: 245 IADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             + +L R    +DK G    D+  L+ + ++  G  V              ++      
Sbjct: 220 TVENSLQRSYITMDKDGDGHYDV--LSALQKSIRGSDV------------NASLHYAAR- 264

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            +++ G +      R L  IA++ +G+  P 
Sbjct: 265 -LVEAGDLP--SLARRLTVIAYEDIGLANPD 292


>gi|297676986|ref|XP_002816398.1| PREDICTED: LOW QUALITY PROTEIN: ATPase WRNIP1-like [Pongo abelii]
          Length = 658

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 65/344 (18%), Positives = 124/344 (36%), Gaps = 31/344 (9%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           R + Q       +RP TL+++ GQ +A     +     +     +  ++  GPPG GKTT
Sbjct: 212 RQMLQGKPLADTMRPDTLQDYFGQSKAVGQDTLLRSLLETNE--IPSLILWGPPGCGKTT 269

Query: 70  LAQVVARELGVNFRST--SGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSII 120
           LA ++A     +           AK  D+  ++   +        + +LFIDEIHR +  
Sbjct: 270 LAHIIANNSKKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKS 329

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++   P +E   + L+    E PS +     LSR  +I            +  R    +
Sbjct: 330 QQDTFLPHVECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAINSL 389

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLA---VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
            ++  +       +   +  +      + D+A   +A  S G  R     L+     A +
Sbjct: 390 GIHVLDSSRPTDPLSHSSNSSSEPAMFIEDKAVDTLAYLSDGDARAGLNGLQLAV-LARL 448

Query: 236 AHAKTITRE-----IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
           +  K   ++          L+     K G  +  + Y      ++         ISA   
Sbjct: 449 SSRKMFCKKSGQSYSPSRVLITENDVKEGLQRSHILYDRAGEEHYNC-------ISALHK 501

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
             R + ++    ++ +       P    R L+  A + +G+  P
Sbjct: 502 SMRGSDQNASLYWLARMLEGGEDPLYVARRLVRFASEDIGLADP 545


>gi|294055980|ref|YP_003549638.1| AAA ATPase central domain protein [Coraliomargarita akajimensis DSM
           45221]
 gi|293615313|gb|ADE55468.1| AAA ATPase central domain protein [Coraliomargarita akajimensis DSM
           45221]
          Length = 450

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 67/322 (20%), Positives = 111/322 (34%), Gaps = 46/322 (14%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            +RPR+L+E  GQ        +       RA+    ++F GPPG GKT++A+V+A E   
Sbjct: 29  RMRPRSLDEIIGQKHIVGEDCLLPRLI--RADNFGSLIFYGPPGCGKTSMAEVIAAETSS 86

Query: 81  NFRSTSGPVIAKAGDLAALLTNLE----DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
            F   +  V++   +L  +L         R +LFIDEIHR +   +++L P +E   + L
Sbjct: 87  KFVRINA-VLSNVAELREILRMARYESAARTILFIDEIHRFNKSQQDLLLPDVEAGNIRL 145

Query: 137 M--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           +      P        LSR  L                   + I      +E       R
Sbjct: 146 IGATTHNPGFYVNAPLLSRSHLFRLEP--------------VAIECVAQVLERAMKDEAR 191

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL- 253
           G         +     +A    G  R A   L  +   ++   +      +   A  R  
Sbjct: 192 GLASHRCEAEEAVFVAVAEFCGGDLRRALNALETLV-LSQPNGSLITADAVEAFAKERQI 250

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
             D+   +  D                     SA +   R +  D    +  +       
Sbjct: 251 RYDRNEDEHYDHA-------------------SAMIKSLRGSDPDAALYWCFKMLQGGED 291

Query: 314 PR--GRLLMPIAWQHLGIDIPH 333
           PR   R L+ +A + +G+   H
Sbjct: 292 PRFLARRLVILASEDVGLANSH 313


>gi|194336934|ref|YP_002018728.1| AAA ATPase central domain protein [Pelodictyon phaeoclathratiforme
           BU-1]
 gi|194309411|gb|ACF44111.1| AAA ATPase central domain protein [Pelodictyon phaeoclathratiforme
           BU-1]
          Length = 447

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 78/336 (23%), Positives = 128/336 (38%), Gaps = 66/336 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACS---NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
                +RP TL++  GQ         L+ F+   +     +  ++F GPPG GKTTLA++
Sbjct: 26  PLAERVRPHTLDDMAGQEHLVGANGPLRKFLSGGQ-----MPSMIFWGPPGSGKTTLAEI 80

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYP 127
            A  L  +F   S  + +   ++   L   E       R +LFIDEIHR +   ++ L  
Sbjct: 81  CATSLNYSFEQLSA-IDSGVKEVRKALEQAEKSRRSGRRTILFIDEIHRFNKAQQDTLLH 139

Query: 128 AMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           A+E   + L+    E PS       LSR  +         +  PL               
Sbjct: 140 AIEQGLIVLIGATTENPSFEVNGALLSRMQV--------YILKPLGS------------- 178

Query: 186 EDLKTIVQRGAK----LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD-FAEVAHAKT 240
           E+++ +++R  K    L  L++       +   S G  R A   +      F E A    
Sbjct: 179 EEIELVIRRALKEDRLLRDLSIEITDLDFLLQFSGGDARKALNAVEAAISLFPEGASEMV 238

Query: 241 ITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
           +TRE+ + AL   A   DK G +  D+                   ISA +   R +  D
Sbjct: 239 LTRELLERALQYKAPIYDKGGENHYDI-------------------ISAFIKSMRGSDPD 279

Query: 299 LIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
               ++ +       P+   R ++  A + +G   P
Sbjct: 280 AALFWLARMIEGGEDPKFIARRMVIFASEDIGNADP 315


>gi|99080129|ref|YP_612283.1| recombination factor protein RarA [Ruegeria sp. TM1040]
 gi|99036409|gb|ABF63021.1| Recombination protein MgsA [Ruegeria sp. TM1040]
          Length = 443

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 75/328 (22%), Positives = 127/328 (38%), Gaps = 54/328 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRPRTL E  GQ +               + +L  ++F GPPG+GKTT+A+++A+
Sbjct: 25  PLADRLRPRTLAEVIGQDQVLGAEAPL--GVMLSSGSLSSLIFWGPPGVGKTTIARLLAQ 82

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
           E  ++F   S      P + K  + A +        +LF+DEIHR +   ++   P MED
Sbjct: 83  ETDLHFVQISAIFTGVPDLKKVFEAAKIRRQNGQGTLLFVDEIHRFNKAQQDGFLPHMED 142

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             + L+    E PS       LSR  ++                  +  RL+  ++E L 
Sbjct: 143 GTILLVGATTENPSFELNAAVLSRAQVL------------------VLERLSLADLERLT 184

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
              ++  +   L ++ EA   +   + G  R    L+ +V   +     + + RE     
Sbjct: 185 QRAEQALE-RRLPLSPEARDALHQMADGDGRALLNLIEQV---SAWKVDQPLGREALATR 240

Query: 250 LLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           L+R A   DK G +  +L                   ISA     R +  D    +  + 
Sbjct: 241 LMRRAAKYDKSGDEHYNL-------------------ISALHKSVRGSDPDAALYWFARM 281

Query: 308 GFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                 P+   R L  +A + + +  P 
Sbjct: 282 LEGGEDPKYLARRLTRMAVEDIALADPQ 309


>gi|33860637|ref|NP_892198.1| recombination factor protein RarA [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33633579|emb|CAE18536.1| putative ATPase, AAA family [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 429

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 65/345 (18%), Positives = 130/345 (37%), Gaps = 45/345 (13%)

Query: 2   MDREGLLSRNVSQED--ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M+ + L S     E        LRP+ L++F GQ     +  +   A     + + +++F
Sbjct: 1   MESDNLFSNTYRIESNAPLADKLRPKNLDDFFGQESILGHDSLLRNAIL--NDKVGNIIF 58

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFID 112
            GPPG+GKTTL ++++     +       V++   +L   + N ++R        +LFID
Sbjct: 59  SGPPGVGKTTLIEIISSNT-RSSLIKLNAVLSSIKELRTEIANAKERLRSSNRKTILFID 117

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           E+HR + + ++ L P++E+  +  +    E P     K  +SR  + +           +
Sbjct: 118 EVHRFTSVQQDALLPSIENGTITFIGATTENPFFAVNKALISRARIFSLLPLNKNDLKKI 177

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
            D+      + +Y       +V+         + +EA   +   S G  R     L    
Sbjct: 178 IDK-----VIKYYSCLKDSKVVE---------IKEEAINHLIKFSGGDARNLINALELGI 223

Query: 231 DFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
              +      +  ++A A        +    + ++ Y          G    + ISA + 
Sbjct: 224 SITKENKENLVVIDLAIA--------EDSIQKKNIVY-------DKNGQNHFDVISAFIK 268

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
             R +  D    ++         P    R L+  A + +G+  P+
Sbjct: 269 SIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPN 313


>gi|313764302|gb|EFS35666.1| recombination factor protein RarA [Propionibacterium acnes
           HL013PA1]
 gi|313816210|gb|EFS53924.1| recombination factor protein RarA [Propionibacterium acnes
           HL059PA1]
 gi|314915292|gb|EFS79123.1| recombination factor protein RarA [Propionibacterium acnes
           HL005PA4]
 gi|314918158|gb|EFS81989.1| recombination factor protein RarA [Propionibacterium acnes
           HL050PA1]
 gi|314920234|gb|EFS84065.1| recombination factor protein RarA [Propionibacterium acnes
           HL050PA3]
 gi|314955559|gb|EFS99960.1| recombination factor protein RarA [Propionibacterium acnes
           HL027PA1]
 gi|314958054|gb|EFT02157.1| recombination factor protein RarA [Propionibacterium acnes
           HL002PA1]
 gi|315098686|gb|EFT70662.1| recombination factor protein RarA [Propionibacterium acnes
           HL059PA2]
 gi|315108666|gb|EFT80642.1| recombination factor protein RarA [Propionibacterium acnes
           HL030PA2]
 gi|327330408|gb|EGE72157.1| replication-associated recombination protein A [Propionibacterium
           acnes HL097PA1]
 gi|327450630|gb|EGE97284.1| recombination factor protein RarA [Propionibacterium acnes
           HL087PA3]
 gi|327454032|gb|EGF00687.1| recombination factor protein RarA [Propionibacterium acnes
           HL083PA2]
 gi|328753290|gb|EGF66906.1| recombination factor protein RarA [Propionibacterium acnes
           HL025PA2]
 gi|328754048|gb|EGF67664.1| recombination factor protein RarA [Propionibacterium acnes
           HL087PA1]
          Length = 462

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 87/337 (25%), Positives = 131/337 (38%), Gaps = 47/337 (13%)

Query: 9   SRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           S +    DA ++  LRPRT++E  GQ    +        A+        V   GPPG+GK
Sbjct: 22  SLDTPNPDAPLAVRLRPRTIDEIVGQQHLLTPGSPLRRLAEGTGAM--SVFLWGPPGVGK 79

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIV 121
           TT+A VV+      F   S  V A   D+   L     +       VLF+DE+HR S   
Sbjct: 80  TTIASVVSHATNRRFVEISA-VTAGVKDIRRELDTARRQLALGQPTVLFVDEVHRFSKAQ 138

Query: 122 EEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +++L PA+E+  + L+    E PS   +   LSR  L+          + L DR      
Sbjct: 139 QDVLLPAVENRTVTLIAATTENPSFSVISPLLSRSLLLTLKPLTEADVSSLLDR------ 192

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
               +   L+T   R        + D+A  ++   + G  R A   L      A  A   
Sbjct: 193 -ALSDPRGLRTESDR-----RYVLEDDARADLLQLAAGDARRALTYLEEAAAGASAAGTD 246

Query: 240 TITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
           TIT +I   A+ R A   D+ G    D+                   ISA +   R +  
Sbjct: 247 TITSQIVSTAVDRAAVRYDRDGDQHYDV-------------------ISAFIKSVRGSDV 287

Query: 298 DLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           D    Y+ +       PR   R L+ +A + +G+  P
Sbjct: 288 DAALHYLARMIEAGEDPRFIARRLIILASEDIGMAAP 324


>gi|256379279|ref|YP_003102939.1| recombination factor protein RarA [Actinosynnema mirum DSM 43827]
 gi|255923582|gb|ACU39093.1| AAA ATPase central domain protein [Actinosynnema mirum DSM 43827]
          Length = 448

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 78/331 (23%), Positives = 122/331 (36%), Gaps = 53/331 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RPRTL+E  GQ              +    A   VL  GPPG GKTTLA +V++
Sbjct: 23  PLAARMRPRTLDEVVGQDHLLGPGAPLRRLVE--GAAPASVLLYGPPGTGKTTLATLVSQ 80

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAM 129
             G  F + S  + A   ++ A++   + R        VLFIDE+HR S   ++ L  A+
Sbjct: 81  ATGRRFAALSA-LSAGVKEVRAVIEEAKRRLVRSGEATVLFIDEVHRFSKTQQDALLGAV 139

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ED  + L+    E P    V   LSR  ++            L  R              
Sbjct: 140 EDRIVLLVAATTENPFFSVVSPLLSRSLVLQLRPLTDGSVRELVRRAAAD---------- 189

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD--FAEVAHAKTITREI 245
                +RG     +A+  +A   +   + G  R A   L    D   A  A + ++    
Sbjct: 190 -----ERGLGG-RVAIEPDAEDHLVRLAGGDGRRALTALEAAADTVLAGGAASGSLDLAT 243

Query: 246 ADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
            +A + + A   D+ G    D+                    SA +   R +  D    Y
Sbjct: 244 LEATVDKAAVRYDRQGDQHYDV-------------------TSAFVKSIRGSDVDAALHY 284

Query: 304 MIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           + +       PR   R L+  A + +G+  P
Sbjct: 285 LARMIEAGEDPRFIARRLVIHATEDVGMADP 315


>gi|119025603|ref|YP_909448.1| recombination factor protein RarA [Bifidobacterium adolescentis
           ATCC 15703]
 gi|154487065|ref|ZP_02028472.1| hypothetical protein BIFADO_00903 [Bifidobacterium adolescentis
           L2-32]
 gi|118765187|dbj|BAF39366.1| hypothetical protein [Bifidobacterium adolescentis ATCC 15703]
 gi|154084928|gb|EDN83973.1| hypothetical protein BIFADO_00903 [Bifidobacterium adolescentis
           L2-32]
          Length = 466

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 80/361 (22%), Positives = 132/361 (36%), Gaps = 73/361 (20%)

Query: 5   EGLLSRNVSQED---ADISLLRPRTLEEFTGQVEACSNLKVFIE----AAKARAEALDHV 57
           + L +   + +D        +RP ++++  GQ                A+K    A   +
Sbjct: 3   DDLFAAMDAPDDVTRPLAVRMRPASIDDVVGQSRVLGEGSPLRRLANPASKGSLTAPSSI 62

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLF 110
           +  GPPG+GKTTLA +VA++ G  F   S  V +   D+  +L    +R        VLF
Sbjct: 63  ILFGPPGVGKTTLAYIVAKQSGRVFEELSA-VTSGVKDVRDVLKRAHERLVSEGKETVLF 121

Query: 111 IDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           IDE+HR S   ++ L P++E+  +  +    E PS   +K  LSR  ++   +       
Sbjct: 122 IDEVHRFSKSQQDALLPSVENRDVTFIAATTENPSFSVIKPLLSRSVVVKLES------- 174

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG-----LAVTDEAACEIAMRSRGTPRIAG 223
                          E +DLKT++ R           + +TDEA  EI   + G  R   
Sbjct: 175 --------------LEPDDLKTLINRAIASEHGLDNEIRITDEAVDEIIRMAGGDARKTL 220

Query: 224 RLLRRVRDFAEVAHAKTITREIADAA---------LLRLAIDKMGFDQLDLRYLTMIARN 274
            +L            +    +              +  +  DK G D  D+         
Sbjct: 221 TILEAAAGALTGDKERKKGAKRPIITPDVVSKVMDVATVRYDKDGDDHYDV--------- 271

Query: 275 FGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
                     ISA +   R +  D    Y+ +       PR   R +M  A + +G+  P
Sbjct: 272 ----------ISAFIKSMRGSDPDATMHYLARMLRAGEDPRFIARRIMIAASEEVGMAAP 321

Query: 333 H 333
            
Sbjct: 322 Q 322


>gi|253574915|ref|ZP_04852255.1| AAA ATPase central domain-containing protein [Paenibacillus sp.
           oral taxon 786 str. D14]
 gi|251845961|gb|EES73969.1| AAA ATPase central domain-containing protein [Paenibacillus sp.
           oral taxon 786 str. D14]
          Length = 452

 Score =  139 bits (350), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 64/286 (22%), Positives = 108/286 (37%), Gaps = 30/286 (10%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           D                  +RP +L+E+ GQ       K+   A +A  + +  +L  GP
Sbjct: 17  DLFSFNQEQSPAGRLLADRMRPTSLDEYIGQEHIVGPGKLLRRAIEA--DQVSSILLYGP 74

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIH 115
           PG GKTTLA +++      F   +  V A   D+  ++   ++       + +LF+DE+H
Sbjct: 75  PGCGKTTLAHIISHHTKAEFVRLNA-VDASVKDVREVIEKAQNDKAFYGTKTILFLDEVH 133

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++ L PA+E   +  +    E P        +SR TL            PL   
Sbjct: 134 RFNSSRQDALLPAVEKGTIIFIGATTENPFHYVNGALMSRSTLFQL--------EPLTKE 185

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
             +         +      ++G     L V +EA   IA  + G  R A   L       
Sbjct: 186 HSLIAMRRALADQ------EKGLGFMPLQVDEEALLHIAAMANGDIRRALNALELAAMTT 239

Query: 234 EVAHAKT--ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGG 277
                 T  IT E+A+ ++ R  +      Q D+  L+   ++  G
Sbjct: 240 PPQPDGTVHITLEVAEESIRRPLVKADESTQYDV--LSAFHKSIRG 283


>gi|15672079|ref|NP_266253.1| recombination factor protein RarA [Lactococcus lactis subsp. lactis
           Il1403]
 gi|12722942|gb|AAK04195.1|AE006248_3 chromosome segregation helicase [Lactococcus lactis subsp. lactis
           Il1403]
          Length = 419

 Score =  139 bits (350), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 72/321 (22%), Positives = 125/321 (38%), Gaps = 45/321 (14%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +RPR ++E  GQ       K+     + +   L  ++  GPPG+GKT++A  +A  +
Sbjct: 6   ARRMRPRNIDEIVGQKHLVGKGKIIRRMVETQ--LLSSMILYGPPGIGKTSIASAIAGTM 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
            V FR+ +     K   L  + +  E   + VL +DEIHRL    ++ L P +E+ Q+ L
Sbjct: 64  NVAFRTFNATTDTKKR-LQEIASEAEFSGQLVLLLDEIHRLDKPKQDFLLPLLENGQIIL 122

Query: 137 M--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           +    E P    V    SR  +            P    F + + L            +R
Sbjct: 123 IGATTENPYFSVVPAIRSRVQIFELKPL-----EPEDLEFAVNLSLQ---------DKER 168

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
           G     + + D+A   +   + G  R     L      +E  H   +T +  + +L R A
Sbjct: 169 GFD-FDVTIDDDALYFLIHSTNGDLRSTFNALELAVLSSEEHH---VTLDDMENSLQRKA 224

Query: 255 --IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
              DK G    D   L+ + ++  G  V              ++       +I+ G +Q 
Sbjct: 225 ATFDKDGDAHYD--LLSALQKSIRGSDV------------NASLHYAAR--LIEGGDLQ- 267

Query: 313 TPRGRLLMPIAWQHLGIDIPH 333
               R L  +A++ +G+  P 
Sbjct: 268 -SLARRLTVMAYEDIGLANPD 287


>gi|295105669|emb|CBL03213.1| Recombination protein MgsA [Faecalibacterium prausnitzii SL3/3]
          Length = 424

 Score =  139 bits (350), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 72/330 (21%), Positives = 123/330 (37%), Gaps = 48/330 (14%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            +     LRP+TL +  GQ    +  +VF    +  +  + +++F GP G GKTT+A+++
Sbjct: 2   NEPLAQRLRPKTLADVCGQQHLLAPGRVFRRTIE--SGRIPNMIFYGPSGTGKTTVARII 59

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLE-----DRDVLFIDEIHRLSIIVEEILYPAM 129
           A   G+     +G      GD+ A+L ++         +L++DEI  L+   ++ L   +
Sbjct: 60  AENSGMTLHKLNG-TSCGTGDIKAVLKDIGTLAAAGGILLYLDEIQYLNKKQQQSLLECI 118

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ED  + L+    E P        LSR T+         L     +R          E E 
Sbjct: 119 EDGSVTLIASTTENPYFYIYNALLSRCTVF----EFKPLAAADVERGVRNAVQRLSEGEQ 174

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV-AHAKTITREIA 246
           +            + + ++A   +A  + G  R A   L      A V    K IT ++ 
Sbjct: 175 V-----------PVCMDEDACAYLAESAGGDLRKALGCLDFAVTAAPVENGEKRITLDMI 223

Query: 247 DAALLR--LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
                R  +  D+ G D  D+                   +SA     R +  D    Y+
Sbjct: 224 RQVTRRTAMRYDREGDDHYDI-------------------VSAYQKSMRGSDPDAALHYL 264

Query: 305 IQQGFIQRTPRG-RLLMPIAWQHLGIDIPH 333
            +       P   R LM  A + +G+  P 
Sbjct: 265 ARLLEAGDLPSACRRLMVCACEDVGLAYPQ 294


>gi|160945075|ref|ZP_02092301.1| hypothetical protein FAEPRAM212_02594 [Faecalibacterium prausnitzii
           M21/2]
 gi|158442806|gb|EDP19811.1| hypothetical protein FAEPRAM212_02594 [Faecalibacterium prausnitzii
           M21/2]
          Length = 424

 Score =  139 bits (350), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 72/330 (21%), Positives = 123/330 (37%), Gaps = 48/330 (14%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            +     LRP+TL +  GQ    +  +VF    +  +  + +++F GP G GKTT+A+++
Sbjct: 2   NEPLAQRLRPKTLADVCGQQHLLAPGRVFRRTIE--SGRIPNMIFYGPSGTGKTTVARII 59

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLE-----DRDVLFIDEIHRLSIIVEEILYPAM 129
           A   G+     +G      GD+ A+L ++         +L++DEI  L+   ++ L   +
Sbjct: 60  AENSGMTLHKLNG-TSCGTGDIKAVLKDIGTLAAAGGILLYLDEIQYLNKKQQQSLLECI 118

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ED  + L+    E P        LSR T+         L     +R          E E 
Sbjct: 119 EDGSVTLIASTTENPYFYIYNALLSRCTVF----EFKPLAAADVERGVRNAVQRLSEGEQ 174

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV-AHAKTITREIA 246
           +            + + ++A   +A  + G  R A   L      A V    K IT ++ 
Sbjct: 175 V-----------PVCMDEDACAYLAESAGGDLRKALGCLDFAVTAAPVENGEKRITLDMI 223

Query: 247 DAALLR--LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
                R  +  D+ G D  D+                   +SA     R +  D    Y+
Sbjct: 224 RQVTRRTAMRYDREGDDHYDI-------------------VSAYQKSMRGSDPDAALHYL 264

Query: 305 IQQGFIQRTPRG-RLLMPIAWQHLGIDIPH 333
            +       P   R LM  A + +G+  P 
Sbjct: 265 ARLLEAGDLPSACRRLMVCACEDVGLAYPQ 294


>gi|308235719|ref|ZP_07666456.1| recombination factor protein RarA [Gardnerella vaginalis ATCC
           14018]
 gi|311114730|ref|YP_003985951.1| replication-associated recombination protein A [Gardnerella
           vaginalis ATCC 14019]
 gi|310946224|gb|ADP38928.1| replication-associated recombination protein A [Gardnerella
           vaginalis ATCC 14019]
          Length = 457

 Score =  139 bits (350), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 89/364 (24%), Positives = 138/364 (37%), Gaps = 74/364 (20%)

Query: 2   MDREGLLSRNVSQED---ADISLLRPRTLEEFTGQVEACSNLKVFIEAA----KARAEAL 54
           M+++ L S + +  D        +RP ++E+  GQ  A          A    K    A 
Sbjct: 1   MEKD-LFSASSAPSDVTRPLAVRMRPSSIEDVLGQSHALKEGSPLRRLANPQSKGSLTAP 59

Query: 55  DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------D 107
             V+  GPPG+GKTTLA +VAR+ G  F   S  V +   D+ A+L    +R        
Sbjct: 60  SSVVLFGPPGVGKTTLAYIVARQSGRVFEELSA-VTSGVKDVRAVLDRAHERLVSKGQET 118

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGL 165
           VLFIDE+HR S   ++ L P++E+  +  +    E PS   +K  LSR  ++   +    
Sbjct: 119 VLFIDEVHRFSKSQQDALLPSVENRDVTFIGATTENPSFSIIKPLLSRSVVVKLES---- 174

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT-----GLAVTDEAACEIAMRSRGTPR 220
                              +EDL T+++R           L + ++A   I   S G  R
Sbjct: 175 -----------------LSVEDLHTLIERAISSENGLNNQLKIDEDAIDSIIRLSGGDAR 217

Query: 221 IAGRLLRRVR-----DFA--EVAHAKTITREIADAALLRL--AIDKMGFDQLDLRYLTMI 271
               +L         D A     +   IT +I    +       DK G D  D+      
Sbjct: 218 KTLTILEAAAGAVTGDVALQHGKNKPVITADIVSNVMDTTTVRYDKDGDDHYDV------ 271

Query: 272 ARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGI 329
                        ISA +   R +  D    Y+ +       PR   R +M  A + +G+
Sbjct: 272 -------------ISAFIKSMRGSEVDASLHYLARMLRAGEDPRFIARRIMIAAAEEVGM 318

Query: 330 DIPH 333
             P 
Sbjct: 319 AAPQ 322


>gi|314931757|gb|EFS95588.1| recombination factor protein RarA [Propionibacterium acnes
           HL067PA1]
          Length = 462

 Score =  139 bits (350), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 87/337 (25%), Positives = 131/337 (38%), Gaps = 47/337 (13%)

Query: 9   SRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           S +    DA ++  LRPRT++E  GQ    +        A+        V   GPPG+GK
Sbjct: 22  SLDTPNPDAPLAVRLRPRTIDEIVGQQHLLTPGSPLRRLAEGTGAM--SVFLWGPPGVGK 79

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIV 121
           TT+A VV+      F   S  V A   D+   L     +       VLF+DE+HR S   
Sbjct: 80  TTIASVVSHATNRRFVEISA-VTAGVKDIRRELDTARRQLALGQPTVLFVDEVHRFSKAQ 138

Query: 122 EEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +++L PA+E+  + L+    E PS   +   LSR  L+          + L DR      
Sbjct: 139 QDVLLPAVENRTVTLIAATTENPSFSVISPLLSRSLLLTLKPLTEADVSSLLDR------ 192

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
               +   L+T   R        + D+A  ++   + G  R A   L      A  A   
Sbjct: 193 -ALSDPRGLRTESDR-----RYVLEDDARADLLQLAAGDARRALTYLEEAAAGASAAGTD 246

Query: 240 TITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
           TIT +I   A+ R A   D+ G    D+                   ISA +   R +  
Sbjct: 247 TITSQIVSTAVDRAAVRYDRDGDQHYDV-------------------ISAFIKSVRGSDV 287

Query: 298 DLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           D    Y+ +       PR   R L+ +A + +G+  P
Sbjct: 288 DAALHYLARMIEAGEDPRFIARRLIILASEDIGMAAP 324


>gi|158522144|ref|YP_001530014.1| recombination factor protein RarA [Desulfococcus oleovorans Hxd3]
 gi|158510970|gb|ABW67937.1| AAA ATPase central domain protein [Desulfococcus oleovorans Hxd3]
          Length = 459

 Score =  139 bits (350), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 70/329 (21%), Positives = 115/329 (34%), Gaps = 49/329 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP  LE+  GQ        +   A +     L  ++  GPPG GKTTLA+++A 
Sbjct: 18  PLADRMRPEKLEDLAGQPHVTGPDSLLRSALEK--GTLFSMILWGPPGCGKTTLARILAG 75

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAM 129
             G  +   S  V++   ++  ++     R        +LF+DE+HR +   ++   P +
Sbjct: 76  MTGAAYVQISA-VLSGVKEIREVVEAARRRRGEFQKDTILFVDEVHRFNKSQQDAFLPHV 134

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E   + L+    E PS   +   +SR  LI            +  R              
Sbjct: 135 ESGLVTLIGATTENPSFEVIPALMSRCRLIVLNPVPEEAVRQVLLR-------------- 180

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
                ++G    GL +  EA   +A  + G  R A   L             TIT    +
Sbjct: 181 ALADTEKGLGKMGLEIEPEALAHLAALADGDVRTALNNLEAAALLRPAGTGVTITLAGVE 240

Query: 248 AALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
            AL + A   DK G +  +L                   ISA     R +  D    ++ 
Sbjct: 241 QALDKKALLYDKSGEEHYNL-------------------ISALHKSLRGSDPDAAVYWLE 281

Query: 306 QQGFIQRTPRG--RLLMPIAWQHLGIDIP 332
           +       P    R ++  A + +G   P
Sbjct: 282 RMLSGGEDPFYILRRMVRFASEDIGNADP 310


>gi|126695427|ref|YP_001090313.1| recombination factor protein RarA [Prochlorococcus marinus str. MIT
           9301]
 gi|126542470|gb|ABO16712.1| putative ATPase, AAA family [Prochlorococcus marinus str. MIT 9301]
          Length = 429

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 74/349 (21%), Positives = 130/349 (37%), Gaps = 53/349 (15%)

Query: 2   MDREGLLS--RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M  E L +    +         LRP+ LE+F GQ    +   +   A     + + + +F
Sbjct: 1   MHSENLFTNYSQIENNAPLADKLRPKNLEDFFGQQPILNENSLLRSAIL--NDKISNFIF 58

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFID 112
            GPPG+GKTTL ++++     +       V++   +L + + N +DR        +LFID
Sbjct: 59  SGPPGVGKTTLIEIISFNT-RSKLIKLNAVLSSVKELRSEIANAKDRLINSKRKTILFID 117

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           E+HR + + ++ L P++E+  +  +    E P     K  +SR ++             +
Sbjct: 118 EVHRFTAVQQDALLPSIENGTITFIGATTENPFFAVNKALVSRSSIFTLLPLAENDLQKI 177

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
                         IE + T   +      + +T +A   +   S G  R     L    
Sbjct: 178 --------------IEKVITHYSKQKDSKKVYLTQDAISHLIKFSSGDARTLINALEMAI 223

Query: 231 DFAEVAHAKTITRE--IADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETIS 286
           +      AK I     IA+ AL +     DK G +  D+                   IS
Sbjct: 224 ETTAANDAKEIHINLSIAEDALQKKNIVYDKNGQNHYDV-------------------IS 264

Query: 287 AGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           A +   R +  D    ++         P    R L+  A + +GI  P+
Sbjct: 265 AFIKSIRGSDPDATLFWLANMLEAGEDPNFIFRRLLISASEDIGIADPN 313


>gi|313893197|ref|ZP_07826774.1| ATPase, AAA family [Veillonella sp. oral taxon 158 str. F0412]
 gi|313442550|gb|EFR60965.1| ATPase, AAA family [Veillonella sp. oral taxon 158 str. F0412]
          Length = 433

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 80/344 (23%), Positives = 131/344 (38%), Gaps = 52/344 (15%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD    L+   + E   +  +RP  L+   GQ +A           +   + +  +LF G
Sbjct: 1   MDSLFDLTPTNTYEPLPV-RMRPTKLDHLYGQEKAVGKGTFLRAMVEK--DTIPSMLFYG 57

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALL-------TNLEDRDVLFIDEI 114
           P G GKTTLA ++A+ +  +         A  G+L  ++        +L+ R +LF+DEI
Sbjct: 58  PCGTGKTTLAGIIAK-MSNSHFVNLNATNAGIGELRTIIEDARKRVRSLQQRTILFLDEI 116

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   +++L P +ED  + L+    E P     +  LSR  LI               
Sbjct: 117 HRFNKSQQDVLLPCVEDGTIILIGATTENPFFEVNRPLLSRLRLITLEALTPKA------ 170

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
             G  +R    + E        G     L VTDE   ++ +   G  R+A  +L +    
Sbjct: 171 -IGQILRRAITDEEV-------GLGKRRLQVTDEVLEDVGIFVNGDGRMALNILEQAA-- 220

Query: 233 AEVAHAKTITREIADAALLR--LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
           A V    TI+ E+ +  + R     DK G    D                   TISA + 
Sbjct: 221 AMVPDEGTISIEVLEKVVGRRIYTYDKKGDSHYD-------------------TISAFIK 261

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
             R +       Y+ +       P    R ++  A + +G+  P
Sbjct: 262 SMRGSDVQATVHYLARMIEAGEDPNFIARRIVICAAEDVGLADP 305


>gi|184159941|ref|YP_001848280.1| recombination factor protein RarA [Acinetobacter baumannii ACICU]
 gi|183211535|gb|ACC58933.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [Acinetobacter baumannii ACICU]
 gi|322509857|gb|ADX05311.1| Putative ATPase [Acinetobacter baumannii 1656-2]
          Length = 421

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 77/328 (23%), Positives = 119/328 (36%), Gaps = 59/328 (17%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
             LRPR L E  GQ           +        L  ++F GPPG+GKTT+A ++A+ + 
Sbjct: 10  ERLRPRDLSEIIGQDHLLGEHAPLRQMIDQGH--LPSIIFWGPPGVGKTTIALLLAQAID 67

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
             F S S  +     +L  ++    D    V+FIDEIHR +   ++ L  A+E  ++ L+
Sbjct: 68  RPFVSLSA-LNTGVKELREVIAESGDLLTPVVFIDEIHRFNKSQQDALLGAVEKGKITLI 126

Query: 138 --VGEGPSARSVKINLSRFTLIAATTRVGL-----LTNPLQ-DRFGIPIRLNFYEIEDLK 189
               E PS       LSR  +    +         L N LQ DRF   ++  +  IE+  
Sbjct: 127 GATTENPSFEVNSALLSRCQVYTLNSLDSEAIQTLLNNALQNDRF---LKERYIHIEEYD 183

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            ++Q  A                       R A  LL  +    E     TIT  +    
Sbjct: 184 ALLQFAAG--------------------DARKALNLLDLIASTFEPEVENTITNAVVVKV 223

Query: 250 LLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
             +     DK G    DL                   +SA +   R +  D    +M + 
Sbjct: 224 AQQNIARYDKSGEQHYDL-------------------VSAFIKSIRGSDPDAALYWMARM 264

Query: 308 GFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                 P    R ++  A + +G   P+
Sbjct: 265 LKGGEDPVFIARRMLIAASEDIGNSNPN 292


>gi|50086546|ref|YP_048056.1| recombination factor protein RarA [Acinetobacter sp. ADP1]
 gi|49532520|emb|CAG70234.1| putative ATPase [Acinetobacter sp. ADP1]
          Length = 423

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 70/325 (21%), Positives = 113/325 (34%), Gaps = 53/325 (16%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
             LRPR L E  GQ           +        L  ++F GPPG+GKTT+A ++A+ + 
Sbjct: 10  ERLRPRDLSEIIGQDHLLGEHAPLRQMIDQGH--LPSIIFWGPPGVGKTTIALLLAQAVD 67

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
             F S S  +     +L  ++    D    V+FIDEIHR +   ++ L  A+E  ++ L+
Sbjct: 68  RPFVSLSA-LNTGVKELREIIAESGDLLTPVVFIDEIHRFNKSQQDALLNAVEKGKITLI 126

Query: 138 --VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR---FGIPIRLNFYEIEDLKTIV 192
               E PS       LSR  +             L DR       ++     IE+ + ++
Sbjct: 127 GATTENPSFEVNSALLSRCQVYTLNVLDSAAIQNLIDRAIDSDSFLKQRHIHIEEYEALI 186

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           Q  A                       R A  L+  +    E      +T  +      +
Sbjct: 187 QFAAG--------------------DARKALNLIDLIASTFEPDQENIVTNAVTVKVAQQ 226

Query: 253 L--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
                DK G    D+                   ISA +   R +  D    +M +    
Sbjct: 227 NIARYDKSGEQHYDI-------------------ISAFIKSIRGSDPDAALYWMARMIKG 267

Query: 311 QRTPR--GRLLMPIAWQHLGIDIPH 333
              P    R ++  A + +G   P+
Sbjct: 268 GEDPVFIARRMLIAASEDIGNSNPN 292


>gi|323464281|gb|ADX76434.1| ATPase AAA family protein [Staphylococcus pseudintermedius ED99]
          Length = 423

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 78/321 (24%), Positives = 132/321 (41%), Gaps = 38/321 (11%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +   S +RPR ++E  GQ        +      A+   L  ++F GPPG+GKT++AQ +A
Sbjct: 4   EPLASRMRPRNIDEVIGQQHLVGETGIIRRMVNAK--RLSSMIFYGPPGIGKTSIAQAIA 61

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
                 FR  +  V     D+  ++   +   + +L +DEIHRL    ++ L P +E+ +
Sbjct: 62  GSTAFKFRQLNA-VTNTKKDMQMIVDEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGK 120

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           + +++G   S     IN       A  +R  +      D+  I + LN           +
Sbjct: 121 I-VLIGATTSNPYHAIN------PAIRSRAQIFELFPLDKDDIKVALN-----HALEDEE 168

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           RG K    ++ D+A    A +S+G  R A   L      A       IT + A+  L R 
Sbjct: 169 RGLKQFDASIDDDAFEYFATQSQGDVRSALNALELAVLSAN-NQPPHITLQDAEDCLQRG 227

Query: 254 AI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
           A   DK G    D+  ++   ++  G  V      A L              +IQ G + 
Sbjct: 228 AFLSDKDGDMHYDV--MSAFQKSIRGSDVD-----AAL---------HYLGRLIQAGDLP 271

Query: 312 RTPRGRLLMPIAWQHLGIDIP 332
                R L+ I+++ +G+  P
Sbjct: 272 TI--ARRLLVISYEDIGLASP 290


>gi|227543541|ref|ZP_03973590.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri
           CF48-3A]
 gi|300908249|ref|ZP_07125715.1| replication-associated recombination protein A [Lactobacillus
           reuteri SD2112]
 gi|227186468|gb|EEI66539.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri
           CF48-3A]
 gi|300894676|gb|EFK88032.1| replication-associated recombination protein A [Lactobacillus
           reuteri SD2112]
          Length = 434

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 70/319 (21%), Positives = 125/319 (39%), Gaps = 37/319 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RPRTL+E  GQ       K+     KA+   L  ++  GPPG GKT++A  +A 
Sbjct: 4   PLAYRMRPRTLDEVVGQQHLVGPGKIISRMVKAK--MLSSMILYGPPGTGKTSIASAIAG 61

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR  +     K    + A    +    +L +DEIHRL  + ++ L P +E+ ++ 
Sbjct: 62  STKYAFRKLNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKVKQDFLLPHLENGRI- 120

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           +++G       + IN +    I + T++  + +   D     I+    + E       RG
Sbjct: 121 ILIGATTENPYISINPA----IRSRTQIFPVYSLSTDEMKTAIQRALVDKE-------RG 169

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI--TREIADAALLRL 253
                L + + A  ++   + G  R A   L       + +    I  T  I + ++ + 
Sbjct: 170 LGNLPLVLEENAEDQLVAATNGDLRSALNGLELAAKSTDPSEDGKIHLTLPIIEESVQKK 229

Query: 254 AI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
           A+  DK G    D      +   F     G +T +A                +I+ G + 
Sbjct: 230 ALSADKDGDAHYD------VISAFQKSIRGSDTDAALH----------YLARLIEAGDLP 273

Query: 312 RTPRGRLLMPIAWQHLGID 330
                R LM  A++ +G+ 
Sbjct: 274 II--ARRLMITAYEDIGLA 290


>gi|289425515|ref|ZP_06427292.1| recombination factor protein RarA [Propionibacterium acnes SK187]
 gi|289428610|ref|ZP_06430294.1| recombination factor protein RarA [Propionibacterium acnes J165]
 gi|289154493|gb|EFD03181.1| recombination factor protein RarA [Propionibacterium acnes SK187]
 gi|289158304|gb|EFD06523.1| recombination factor protein RarA [Propionibacterium acnes J165]
 gi|313791989|gb|EFS40090.1| recombination factor protein RarA [Propionibacterium acnes
           HL110PA1]
 gi|313802061|gb|EFS43295.1| recombination factor protein RarA [Propionibacterium acnes
           HL110PA2]
 gi|313807672|gb|EFS46159.1| recombination factor protein RarA [Propionibacterium acnes
           HL087PA2]
 gi|313812793|gb|EFS50507.1| recombination factor protein RarA [Propionibacterium acnes
           HL025PA1]
 gi|313818709|gb|EFS56423.1| recombination factor protein RarA [Propionibacterium acnes
           HL046PA2]
 gi|313820479|gb|EFS58193.1| recombination factor protein RarA [Propionibacterium acnes
           HL036PA1]
 gi|313822715|gb|EFS60429.1| recombination factor protein RarA [Propionibacterium acnes
           HL036PA2]
 gi|313825351|gb|EFS63065.1| recombination factor protein RarA [Propionibacterium acnes
           HL063PA1]
 gi|313838882|gb|EFS76596.1| recombination factor protein RarA [Propionibacterium acnes
           HL086PA1]
 gi|314925088|gb|EFS88919.1| recombination factor protein RarA [Propionibacterium acnes
           HL036PA3]
 gi|314960375|gb|EFT04477.1| recombination factor protein RarA [Propionibacterium acnes
           HL002PA2]
 gi|314962645|gb|EFT06745.1| recombination factor protein RarA [Propionibacterium acnes
           HL082PA1]
 gi|314987969|gb|EFT32060.1| recombination factor protein RarA [Propionibacterium acnes
           HL005PA2]
 gi|314989779|gb|EFT33870.1| recombination factor protein RarA [Propionibacterium acnes
           HL005PA3]
 gi|315077861|gb|EFT49912.1| recombination factor protein RarA [Propionibacterium acnes
           HL053PA2]
 gi|315080486|gb|EFT52462.1| recombination factor protein RarA [Propionibacterium acnes
           HL078PA1]
 gi|315084157|gb|EFT56133.1| recombination factor protein RarA [Propionibacterium acnes
           HL027PA2]
 gi|315085500|gb|EFT57476.1| recombination factor protein RarA [Propionibacterium acnes
           HL002PA3]
 gi|315088443|gb|EFT60419.1| recombination factor protein RarA [Propionibacterium acnes
           HL072PA1]
 gi|315105746|gb|EFT77722.1| recombination factor protein RarA [Propionibacterium acnes
           HL030PA1]
 gi|327331788|gb|EGE73525.1| replication-associated recombination protein A [Propionibacterium
           acnes HL096PA3]
 gi|327443565|gb|EGE90219.1| recombination factor protein RarA [Propionibacterium acnes
           HL013PA2]
 gi|327453292|gb|EGE99946.1| recombination factor protein RarA [Propionibacterium acnes
           HL092PA1]
 gi|328753320|gb|EGF66936.1| recombination factor protein RarA [Propionibacterium acnes
           HL020PA1]
 gi|332675579|gb|AEE72395.1| AAA domain-containing protein [Propionibacterium acnes 266]
          Length = 462

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 87/337 (25%), Positives = 131/337 (38%), Gaps = 47/337 (13%)

Query: 9   SRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           S +    DA ++  LRPRT++E  GQ    +        A+        V   GPPG+GK
Sbjct: 22  SLDTPNPDAPLAVRLRPRTIDEIVGQQHLLTPGSPLRRLAEGTGAM--SVFLWGPPGVGK 79

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIV 121
           TT+A VV+      F   S  V A   D+   L     +       VLF+DE+HR S   
Sbjct: 80  TTIASVVSHATNRRFVEISA-VTAGVKDIRRELDTARRQLALGQPTVLFVDEVHRFSKAQ 138

Query: 122 EEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +++L PA+E+  + L+    E PS   +   LSR  L+          + L DR      
Sbjct: 139 QDVLLPAVENRTVTLIAATTENPSFSVISPLLSRSLLLTLKPLTEADVSSLLDR------ 192

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
               +   L+T   R        + D+A  ++   + G  R A   L      A  A   
Sbjct: 193 -ALSDPRGLRTESDR-----RYVLEDDARADLLQLAAGDARRALTYLEEAAAGASAAGTD 246

Query: 240 TITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
           TIT +I   A+ R A   D+ G    D+                   ISA +   R +  
Sbjct: 247 TITSQIVSTAVDRAAVRYDRDGDQHYDV-------------------ISAFIKSVRGSDV 287

Query: 298 DLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           D    Y+ +       PR   R L+ +A + +G+  P
Sbjct: 288 DAALHYLARMIEAGEDPRFIARRLIILASEDIGMAAP 324


>gi|154686894|ref|YP_001422055.1| recombination factor protein RarA [Bacillus amyloliquefaciens
           FZB42]
 gi|154352745|gb|ABS74824.1| YrvN [Bacillus amyloliquefaciens FZB42]
          Length = 422

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 72/325 (22%), Positives = 124/325 (38%), Gaps = 43/325 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP  +E+  GQ       K+     +A+   L  ++  GPPG+GKT++A  +A 
Sbjct: 3   PLAYRMRPANIEDIIGQEHLVKEDKIIGRMVRAKH--LSSMILYGPPGIGKTSIATAIAG 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
              + FR  +  VI    D+  ++   +   + +L +DE+HRL    ++ L P +E+  +
Sbjct: 61  STSIAFRKLNA-VIHNKKDMEIVVQEAKMSGQVILILDEVHRLDKGKQDFLLPYLENGMI 119

Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            L+      P         SR  +         L     +R                T  
Sbjct: 120 ILIGATTANPYHAINPAIRSRTQIFELEPLTPDLIKQALER--------------ALTDE 165

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT--ITREIADAAL 250
            RG     ++V D+A    A    G  R A   L       + +   T  ITRE A+  L
Sbjct: 166 HRGLGSYSVSVDDDAMDHFAQGCGGDVRSALNALELAVLSTKESSDGTIRITRETAEECL 225

Query: 251 LR--LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            +     DK G    D+  L+   ++  G            S+   A+  L    +I+ G
Sbjct: 226 QKKSYTHDKNGDAHYDV--LSAFQKSIRG------------SDANAALHYLAR--LIEAG 269

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIPH 333
            ++     R L+ IA++ +G+  P 
Sbjct: 270 DLESIS--RRLLVIAYEDIGLASPQ 292


>gi|320583346|gb|EFW97561.1| DNA replication ATPase [Pichia angusta DL-1]
          Length = 769

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 73/347 (21%), Positives = 116/347 (33%), Gaps = 54/347 (15%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           D   LL      +      LRP +LE++ GQ        +       + + +  ++  G 
Sbjct: 331 DELRLLKAQA--KLPLAERLRPSSLEDYIGQEHLVGEGGILR--GFIQNDRIPSLILWGY 386

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIH 115
           PG GKTTLA++++      F   S        D   +           +   ++FIDEIH
Sbjct: 387 PGTGKTTLARIISHATKSRFIELSA-TSNGISDCKRVFEEARNEYKLTKRHTIVFIDEIH 445

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++I  P +E   + L+    E PS +     LSR        RV +L     D 
Sbjct: 446 RFNKAQQDIFLPHVEKGTITLVGATTENPSFQLNSALLSRC-------RVFVLNRLTSDE 498

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV---- 229
               +      I   + +V     +  L    EA   I   + G  R A  LL       
Sbjct: 499 LHKIVSKALLVINKTRKLVH---NVPVLRFNKEAIGYICNIADGDSRSALNLLELADSHF 555

Query: 230 ---RDFAEVAHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIET 284
                  +  H   +  E     L R     D++G    D                   T
Sbjct: 556 MTNYSLEQGKHVIEVNAEQLREVLKRTHMVYDRVGDAHYD-------------------T 596

Query: 285 ISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGI 329
           ISA     R +  D    Y+ +       P    R ++ IA + +G+
Sbjct: 597 ISAFHKSIRGSNADAAMYYLGRMLKGGENPLYIARRMIRIASEDVGV 643


>gi|313771979|gb|EFS37945.1| recombination factor protein RarA [Propionibacterium acnes
           HL074PA1]
 gi|313810179|gb|EFS47900.1| recombination factor protein RarA [Propionibacterium acnes
           HL083PA1]
 gi|313830510|gb|EFS68224.1| recombination factor protein RarA [Propionibacterium acnes
           HL007PA1]
 gi|313833546|gb|EFS71260.1| recombination factor protein RarA [Propionibacterium acnes
           HL056PA1]
 gi|314973510|gb|EFT17606.1| recombination factor protein RarA [Propionibacterium acnes
           HL053PA1]
 gi|314976190|gb|EFT20285.1| recombination factor protein RarA [Propionibacterium acnes
           HL045PA1]
 gi|314983788|gb|EFT27880.1| recombination factor protein RarA [Propionibacterium acnes
           HL005PA1]
 gi|315096057|gb|EFT68033.1| recombination factor protein RarA [Propionibacterium acnes
           HL038PA1]
 gi|327326337|gb|EGE68127.1| replication-associated recombination protein A [Propionibacterium
           acnes HL096PA2]
 gi|327445769|gb|EGE92423.1| recombination factor protein RarA [Propionibacterium acnes
           HL043PA2]
 gi|327448248|gb|EGE94902.1| recombination factor protein RarA [Propionibacterium acnes
           HL043PA1]
 gi|328760701|gb|EGF74267.1| replication-associated recombination protein A [Propionibacterium
           acnes HL099PA1]
          Length = 462

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 87/337 (25%), Positives = 131/337 (38%), Gaps = 47/337 (13%)

Query: 9   SRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           S +    DA ++  LRPRT++E  GQ    +        A+        V   GPPG+GK
Sbjct: 22  SLDTPNPDAPLAVRLRPRTIDEIVGQQHLLTPGSPLRRLAEGTGAM--SVFLWGPPGVGK 79

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIV 121
           TT+A VV+      F   S  V A   D+   L     +       VLF+DE+HR S   
Sbjct: 80  TTIASVVSHATNRRFVEISA-VTAGVKDIRRELDTARRQLALGQPTVLFVDEVHRFSKAQ 138

Query: 122 EEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +++L PA+E+  + L+    E PS   +   LSR  L+          + L DR      
Sbjct: 139 QDVLLPAVENRTVTLIAATTENPSFSVISPLLSRSLLLTLKPLTEADVSSLLDR------ 192

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
               +   L+T   R        + D+A  ++   + G  R A   L      A  A   
Sbjct: 193 -ALSDPRGLRTESDR-----RYVLEDDARADLLQLAAGDARRALTYLEEAAAGASAAGTD 246

Query: 240 TITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
           TIT +I   A+ R A   D+ G    D+                   ISA +   R +  
Sbjct: 247 TITSQIVSTAVDRAAVRYDRDGDQHYDV-------------------ISAFIKSVRGSDV 287

Query: 298 DLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           D    Y+ +       PR   R L+ +A + +G+  P
Sbjct: 288 DAALHYLARMIEAGEDPRFIARRLIILASEDIGMAAP 324


>gi|314967490|gb|EFT11589.1| recombination factor protein RarA [Propionibacterium acnes
           HL037PA1]
          Length = 462

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 85/337 (25%), Positives = 130/337 (38%), Gaps = 47/337 (13%)

Query: 9   SRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           S +    DA ++  LRPRT++E  GQ    +        A+        V   GPPG+GK
Sbjct: 22  SLDTPNPDAPLAVRLRPRTIDEIVGQQHLLTPGSPLRRLAEGTGAM--SVFLWGPPGVGK 79

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIV 121
           TT+A VV+      F   S  V A   D+   L     +       VLF+DE+HR S   
Sbjct: 80  TTIASVVSHATNRRFVEISA-VTAGVKDIRRELDTARRQLALGQPTVLFVDEVHRFSKAQ 138

Query: 122 EEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +++L PA+E+  + L+    E PS   +   LSR  L+          + L DR  +   
Sbjct: 139 QDVLLPAVENRTVTLIAATTENPSFSVISPLLSRSLLLTLKPLTEADVSSLLDR-ALSDP 197

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
                  D + +++  A+   L +           + G  R A   L      A  A   
Sbjct: 198 CGLRTESDRRYVLEDDARADLLQL-----------AAGDARRALTYLEEAAAGASAAGTD 246

Query: 240 TITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
           TIT +I   A+ R A   D+ G    D+                   ISA +   R +  
Sbjct: 247 TITSQIVSTAVDRAAVRYDRDGDQHYDV-------------------ISAFIKSVRGSDV 287

Query: 298 DLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           D    Y+ +       PR   R L+ +A + +G+  P
Sbjct: 288 DAALHYLARMIEAGEDPRFIARRLIILASEDIGMAAP 324


>gi|296284469|ref|ZP_06862467.1| recombination factor protein RarA [Citromicrobium bathyomarinum
           JL354]
          Length = 440

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 79/333 (23%), Positives = 125/333 (37%), Gaps = 60/333 (18%)

Query: 14  QEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           +EDA ++  LRPRTL E  GQ               A    L  ++  GPPG GKTT+A+
Sbjct: 21  REDAPLADRLRPRTLSEVVGQEHLTGPEGSIGRMVAA--GRLSSMILWGPPGTGKTTIAR 78

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILY 126
           ++A  +G+ + + S  V +   DL       E       + +LF+DEIHR +   ++   
Sbjct: 79  LLADSVGMRYAAVSA-VFSGVADLKKAFAEAETAAKAGQKTLLFVDEIHRFNRAQQDGFL 137

Query: 127 PAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           P +E   + L+    E PS       LSR  ++            + +R G         
Sbjct: 138 PFVERGTVTLVGATTENPSFALNAALLSRAQVL------------ILERLG--------- 176

Query: 185 IEDLKTIVQRGAKLT-GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            E L  ++ R  +L   L +TD+A   +   + G  R    LL +          K +  
Sbjct: 177 HEALGELLTRAEELERPLPLTDDARAALIASADGDGRF---LLNQAETLYNAGLDKPLDP 233

Query: 244 EIADAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
               + L R     DK      +L                   ISA     R +  D   
Sbjct: 234 AGLGSFLQRRVAVYDKDRDGHYNL-------------------ISALHKAVRGSDPDAAL 274

Query: 302 PYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
            Y+ +       PR   R L+ +A + +G+  P
Sbjct: 275 YYLARMLTAGEEPRYLARRLVRMAVEDIGMADP 307


>gi|170747937|ref|YP_001754197.1| recombination factor protein RarA [Methylobacterium radiotolerans
           JCM 2831]
 gi|170654459|gb|ACB23514.1| AAA ATPase central domain protein [Methylobacterium radiotolerans
           JCM 2831]
          Length = 447

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 69/326 (21%), Positives = 106/326 (32%), Gaps = 49/326 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP+TL E  GQ                R   L  ++F GPPG GKTT+A+++A+
Sbjct: 27  PLADRLRPQTLAEVVGQEHLTGEGGALTR--LLRGRTLGSLIFWGPPGTGKTTVARLLAQ 84

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
              ++F   S      P + K  + A          +LF+DEIHR +    +   P MED
Sbjct: 85  GTDLHFEQISAIFSGVPDLRKVFEAARKRRATGQGTLLFVDEIHRFNRAQLDAFLPVMED 144

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             + L+    E PS       LSR  ++            L  R            E+ +
Sbjct: 145 GTVTLVGATTENPSFELNAALLSRARVLLFRALDPGAVARLLVRAEALTGQALPLTEEAR 204

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            ++ R                    + G  R A  L   V   A     +T+  E     
Sbjct: 205 GVLVR-------------------MADGDGRAALTLAEEVWRSA--RPGETLDAEALQEI 243

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           + R A       +                      ISA     R +  D    Y+ +   
Sbjct: 244 VQRRAPIYDKAQEGH-----------------YNLISALHKTVRGSDPDAALYYLCRMLD 286

Query: 310 IQRTPR--GRLLMPIAWQHLGIDIPH 333
                    R L+ +A + +G+  P 
Sbjct: 287 AGEDRLFIARRLVRMAVEDIGLADPQ 312


>gi|327540333|gb|EGF26919.1| replication-associated recombination protein A [Rhodopirellula
           baltica WH47]
          Length = 439

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 68/329 (20%), Positives = 114/329 (34%), Gaps = 48/329 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP+ L EF GQ       K+        +  +  +L  GPPG GKTTLA ++A 
Sbjct: 17  PLAARMRPKKLSEFVGQQHILGEGKLLRRLI--ASGRVGSILLHGPPGTGKTTLAHLIAS 74

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAM 129
           E      + +  + +   D+  +L    D       R +LFIDEIHR +   ++ L   +
Sbjct: 75  EQNSELITLNA-ISSGVKDVREVLAKARDRVSAGDPRPLLFIDEIHRFNKSQQDALLADV 133

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E   + L+      P        +SR  L             L  R              
Sbjct: 134 ESGIISLIGATTSNPYFAVNAALISRSQLFGLEPVSVEDMRSLLKR-------------- 179

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
             T  + G     + + ++A   ++  S G  R A   L       E   A     ++A+
Sbjct: 180 AITDRECGLGNQNVTIDEDAIDYLSSASDGDARKALTALEVAVHSHENPKASISRDDVAE 239

Query: 248 AALLRL-AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           +   R+   D  G D  DL   + + ++  G  V                 D    ++ +
Sbjct: 240 SMTSRIAGYDATGDDHYDLA--SALIKSIRGSDV-----------------DASLYWLAR 280

Query: 307 QGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                   R   R L+ +A + +G   P 
Sbjct: 281 MLEGGEDIRFLCRRLVILASEDIGNADPQ 309


>gi|289450570|ref|YP_003475446.1| recombination factor protein RarA [Clostridiales genomosp. BVAB3
           str. UPII9-5]
 gi|289185117|gb|ADC91542.1| recombination factor protein RarA [Clostridiales genomosp. BVAB3
           str. UPII9-5]
          Length = 433

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 74/334 (22%), Positives = 123/334 (36%), Gaps = 52/334 (15%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           +++     + P ++E++ GQ    +  K+         + L  ++  GPPG GK++LA+V
Sbjct: 2   RQEPLAYRMAPASVEQYVGQSHLLAPGKLLRRMI--DGDKLSSIILFGPPGTGKSSLAKV 59

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILY 126
           +A    + F+  +  V A   D+  ++ +        E + +LFIDEIHR + + ++ L 
Sbjct: 60  IAATTKLPFKRLNA-VTAGVTDIKQIIADAANPLLTPEGQVILFIDEIHRFNKLQQDALL 118

Query: 127 PAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           P++E   + L+    E P     K  +SR T+            PL +   + I      
Sbjct: 119 PSVEAGLVILIGATTENPYFEVNKALISRATVFQLF--------PLSETDILTILRRSLT 170

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            E       RG       V + A   IA    G  RIA   L       +   A T+   
Sbjct: 171 SE-------RGLAAWQAEVEETALQFIANHCNGDARIALNALELAVCSTQPDAAGTLHVT 223

Query: 245 IADAALLRL----AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           + D A        A D  G    D                   TISA +   R +  D  
Sbjct: 224 VNDVAESMQRRSTAFDATGEGHYD-------------------TISALIKSMRGSDPDAT 264

Query: 301 EPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIP 332
             Y+              R L+  A + +G+  P
Sbjct: 265 AYYLALALHGGEDIEFLARRLVICAAEDVGLANP 298


>gi|268611208|ref|ZP_06144935.1| recombination factor protein RarA [Ruminococcus flavefaciens FD-1]
          Length = 423

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 65/328 (19%), Positives = 124/328 (37%), Gaps = 48/328 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+TL +  GQ    ++ K         +  + +++F GP G+GKTT+A+++A 
Sbjct: 4   PLADKIRPKTLADVVGQEHILADGKPLRRII--DSGTVPNMIFYGPSGVGKTTVARIIAE 61

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL-----EDRDVLFIDEIHRLSIIVEEILYPAMED 131
             G++    +G   A   D+  ++ ++     E+  +L++DEI  L+   ++ L   +E+
Sbjct: 62  NCGMSLYKLNG-TNASISDIKDVVADIGTFGSENGILLYLDEIQYLNKKQQQSLLEYIEN 120

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAAT-TRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
             + L+    E P        +SR T+          L   ++  F I    N Y +E  
Sbjct: 121 GDITLIASTTENPYFSVYNAVISRSTVFEFKPVSAEQLMPAIRRAFRIMSEENGYAVEAS 180

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             I+++ A                    G  R A           E +  K      +  
Sbjct: 181 DDIIKQIA----------------YSCGGDVRKAMNTAELAVVCGEASDGKVAVTADSLK 224

Query: 249 ALLR---LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
            L +   +  D+ G    D   L+ + ++  G            S+   A+       +I
Sbjct: 225 ILAQRSNMRYDRDGDQHYD--ILSALQKSIRG------------SDENAALHYAAR--LI 268

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           + G I      R L+ IA + +G+  P 
Sbjct: 269 EAGDI--ISLSRRLLVIAAEDIGLAYPQ 294


>gi|282853871|ref|ZP_06263208.1| recombination factor protein RarA [Propionibacterium acnes J139]
 gi|282583324|gb|EFB88704.1| recombination factor protein RarA [Propionibacterium acnes J139]
 gi|314923565|gb|EFS87396.1| recombination factor protein RarA [Propionibacterium acnes
           HL001PA1]
 gi|314966611|gb|EFT10710.1| recombination factor protein RarA [Propionibacterium acnes
           HL082PA2]
 gi|314981339|gb|EFT25433.1| recombination factor protein RarA [Propionibacterium acnes
           HL110PA3]
 gi|315092200|gb|EFT64176.1| recombination factor protein RarA [Propionibacterium acnes
           HL110PA4]
 gi|315092867|gb|EFT64843.1| recombination factor protein RarA [Propionibacterium acnes
           HL060PA1]
 gi|315103612|gb|EFT75588.1| recombination factor protein RarA [Propionibacterium acnes
           HL050PA2]
 gi|327327434|gb|EGE69210.1| replication-associated recombination protein A [Propionibacterium
           acnes HL103PA1]
          Length = 461

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 87/337 (25%), Positives = 132/337 (39%), Gaps = 47/337 (13%)

Query: 9   SRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           S +    DA ++  LRPRT++E  GQ    +        A+        V   GPPG+GK
Sbjct: 21  SLDTPNPDAPLAVRLRPRTIDEIVGQQHLLTPGSPLRRLAEGTGAM--SVFLWGPPGVGK 78

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIV 121
           TT+A VV+      F   S  V A   D+   L     +       VLF+DE+HR S   
Sbjct: 79  TTIASVVSHATNRRFVEISA-VTAGVKDIRRELDTARRQLALGQPTVLFVDEVHRFSKAQ 137

Query: 122 EEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +++L PA+E+  + L+    E PS   +   LSR  L+       +  + L DR      
Sbjct: 138 QDVLLPAVENRTVTLIAATTENPSFSVISPLLSRSLLLTLKPLTEVDVSSLLDR------ 191

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
               +   L+T   R        + D+A  ++   + G  R A   L      A  A   
Sbjct: 192 -ALSDPRGLRTESDR-----RYVLEDDARADLLQLAGGDARRALTYLEEAAAGASTAGTD 245

Query: 240 TITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
           TIT +I   A+ R A   D+ G    D+                   ISA +   R +  
Sbjct: 246 TITSQIVSTAVDRAAVRYDRDGDQHYDV-------------------ISAFIKSVRGSDV 286

Query: 298 DLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           D    Y+ +       PR   R L+ +A + +G+  P
Sbjct: 287 DAALHYLARMIEAGEDPRFIARRLIILASEDIGMAAP 323


>gi|254821817|ref|ZP_05226818.1| recombination factor protein RarA [Mycobacterium intracellulare
           ATCC 13950]
          Length = 454

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 76/336 (22%), Positives = 124/336 (36%), Gaps = 58/336 (17%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
            S        +RP +L+E  GQ    +         +    A    +  GPPG GKTTLA
Sbjct: 25  ASSGSPLAVRMRPASLDEVVGQDHLLAPGSPLRRLVEGSGVA--SAILYGPPGSGKTTLA 82

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEIL 125
            ++++  G  F + S  + A   D+ A++          ++ VLFIDE+HR S   ++ L
Sbjct: 83  ALISQATGRRFEALSA-LSAGVKDVRAVIEKARTALLHGEQTVLFIDEVHRFSKTQQDAL 141

Query: 126 YPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
             A+E+  + L+    E PS   V   LSR                      + ++L   
Sbjct: 142 LSAVENRVVLLVAATTENPSFSVVAPLLSR---------------------SLILQLRPL 180

Query: 184 EIEDLKTIVQRGAKL-----TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
             +D++T+VQR           +AV  +A   +   + G  R A   L    +       
Sbjct: 181 SADDIRTVVQRAIDDPRGLGGQVAVAPDAVDLLVRLAAGDARRALTALEVAAEAVPPDGE 240

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
            T+T          +  D+ G    D+                   ISA +   R +  D
Sbjct: 241 LTVTAIEQSLDEAAVRYDRDGDQHYDV-------------------ISAFIKSVRGSDVD 281

Query: 299 LIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
               Y+ +       PR   R LM +A + +G+  P
Sbjct: 282 AALHYLARMLVAGEDPRFVARRLMILASEDIGMADP 317


>gi|225021329|ref|ZP_03710521.1| hypothetical protein CORMATOL_01348 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945711|gb|EEG26920.1| hypothetical protein CORMATOL_01348 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 451

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 68/332 (20%), Positives = 121/332 (36%), Gaps = 48/332 (14%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           VS      + +RPR+L+E  GQ    +  K      +   +A   V+  GPPG GKTT+A
Sbjct: 24  VSPTAPLAARMRPRSLDEVAGQDHVLAAGKPLRRLIEGSGDA--SVILYGPPGTGKTTIA 81

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEIL 125
            ++++     F   S  + +   ++ A++             VLFIDE+HR S   ++ L
Sbjct: 82  SLISQATARKFVGLSA-LNSGVKEVRAVIDQARRDLIQGMSTVLFIDEVHRFSKTQQDAL 140

Query: 126 YPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
             A+E+  + L+    E PS   V   LSR  ++   +        +  R          
Sbjct: 141 LAAVENRVVLLVAATTENPSFSVVAPLLSRSLIVKLESLDDASVRAVLRR---------- 190

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
                  + +RG     +  +D A  ++   S G  R +   L    +        ++  
Sbjct: 191 -----ALVDERGLGG-RITASDAAIDQLVALSGGDARRSLTYLEAAAESVPDGGELSMDV 244

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
             A+     +  D+ G    D+   +   ++  G  V                 D    Y
Sbjct: 245 VAANIDRAVVRYDRDGDQHYDVA--SAFIKSIRGSDV-----------------DAAVHY 285

Query: 304 MIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           + +       PR   R L+  A + +G+  P 
Sbjct: 286 LARMLVAGEDPRFVARRLVIAAAEDVGLADPQ 317


>gi|38233937|ref|NP_939704.1| recombination factor protein RarA [Corynebacterium diphtheriae NCTC
           13129]
 gi|38200198|emb|CAE49879.1| Conserved hypothetical protein (putative ATP/GTP binding protein)
           [Corynebacterium diphtheriae]
          Length = 456

 Score =  139 bits (349), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 78/331 (23%), Positives = 123/331 (37%), Gaps = 56/331 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP++L+E  GQ     + K          +A   V+  GPPG GKTT+A +++ 
Sbjct: 35  PLAARMRPQSLDEVVGQRHLLDSGKPLQRLIAGSGDA--SVILYGPPGTGKTTIASLISA 92

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
             G  F   S        I +  D A        R VLFIDE+HR S   ++ L  A+E+
Sbjct: 93  GTGHEFVGLSALNSGVKEIREVIDQARRNLIHGKRTVLFIDEVHRFSKTQQDALLAAVEN 152

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAAT-----TRVGLLTNPLQDRFGIPIRLNFYE 184
             + L+    E PS   V   LSR  ++            +L + LQD+ G+  R+    
Sbjct: 153 RTVLLVAATTENPSFSVVAPLLSRSLILQLKPLTHDDIKTVLLHALQDKRGLDNRITI-S 211

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            E L+ +V                            ++G   RR   + E A       E
Sbjct: 212 DEALEQLVL---------------------------LSGGDARRSLTYLEAASESLADGE 244

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
                ++R  +DK             I R    G    + +SA +   R +  D    Y+
Sbjct: 245 ELTPEIIRHNVDK------------AIVRYDRDGDQHYDVVSAFIKSMRGSDVDAALHYL 292

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +       PR   R L+  A + +G+  P 
Sbjct: 293 ARMIDAGEDPRFIARRLVIHASEDVGMADPQ 323


>gi|163849727|ref|YP_001637770.1| recombination factor protein RarA [Methylobacterium extorquens PA1]
 gi|163661332|gb|ABY28699.1| AAA ATPase central domain protein [Methylobacterium extorquens PA1]
          Length = 437

 Score =  139 bits (349), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 73/342 (21%), Positives = 109/342 (31%), Gaps = 49/342 (14%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D                  LRPR L E  GQ               +R+  L  ++F 
Sbjct: 1   MSDLFVSAGLETGAPRPLADRLRPRRLAEVVGQEHLTGPDGALTRLLASRS--LGSLVFW 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIH 115
           GPPG GKTT+A+++A E  ++F   S        + K  + A          +LF+DEIH
Sbjct: 59  GPPGTGKTTVARLLAHETALHFEQISAIFSGIADLRKVFEAARKRRATGQGTLLFVDEIH 118

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +    +   P MED  + L+    E PS       LSR  ++            L   
Sbjct: 119 RFNRAQLDAFLPVMEDGTVTLVGATTENPSFELNAALLSRARVLLFRALDAPALARLL-- 176

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                                 A+   +        E A  +    R+A    R     A
Sbjct: 177 ----------------------ARAEEMDGQPLPLDEEARAALI--RMADGDGRAALTLA 212

Query: 234 EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
           E         EI DA  L+  + +             I      G   +  ISA     R
Sbjct: 213 EEVWRSARPGEILDAETLQSLVQRRA----------PIYDKAQEGHYNL--ISALHKTVR 260

Query: 294 DAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +  D    Y+ +            R L+ +A + +G+  P 
Sbjct: 261 GSDPDAALYYLCRMLDAGEDRLFIARRLVRMAVEDIGLADPQ 302


>gi|26349529|dbj|BAC38404.1| unnamed protein product [Mus musculus]
          Length = 568

 Score =  139 bits (349), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 65/342 (19%), Positives = 122/342 (35%), Gaps = 35/342 (10%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLG 66
           R + +       +RP TL+++ GQ  A      L+  +EA +     +  ++  GPPG G
Sbjct: 214 RQMLEGKPLADKMRPDTLQDYIGQSRAVGQETLLRSLLEANE-----IPSLILWGPPGCG 268

Query: 67  KTTLAQVVARELGVNFRST--SGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRL 117
           KTTLA ++A     +           AK  D+  ++   +        + +LFIDEIHR 
Sbjct: 269 KTTLAHIIANNSKKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRF 328

Query: 118 SIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
           +   ++   P +E   + L+    E PS +     LSR  +I            +  R  
Sbjct: 329 NKSQQDTFLPHVECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAI 388

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLA---VTDEAACEIAMRSRGTPRIAGRLLRRVR-- 230
             + ++  +       +   +  +      + D+A   +A  S G  R     L+     
Sbjct: 389 NSLGIHVLDSSRPTDPLSHSSNCSSEPSVFIEDKAVDTLAYLSDGDARTGLNGLQLAVLA 448

Query: 231 --DFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAG 288
                +V   K+         L+     K G  +  + Y      ++         I A 
Sbjct: 449 RLSSRKVFCKKSGQTYSPSRVLITENDVKEGLQRSHILYDRAGEEHYNC-------ICAL 501

Query: 289 LSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLG 328
               R + ++    ++ +       P    R L+  A + +G
Sbjct: 502 HKAMRGSDQNASLYWLARMLEGGEDPLYVARRLVRFASEDIG 543


>gi|283455715|ref|YP_003360279.1| AAA family ATPase [Bifidobacterium dentium Bd1]
 gi|283102349|gb|ADB09455.1| AAA family ATPase [Bifidobacterium dentium Bd1]
          Length = 467

 Score =  139 bits (349), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 78/358 (21%), Positives = 127/358 (35%), Gaps = 62/358 (17%)

Query: 2   MDREGLLSRNVSQE--DADISLLRPRTLEEFTGQVEACSNLKVFIE----AAKARAEALD 55
           M  +   +    +E        +RP T++E  GQ                A++    A  
Sbjct: 10  MTEDLFGAMEAPEEMTRPLAVRMRPSTVDEVVGQGRVLGEGSPLRRLANPASRKSLTAPS 69

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DV 108
            ++  GPPG+GKTTLA +VA++ G  F   S  V +   D+  +L    DR        V
Sbjct: 70  SIILFGPPGVGKTTLAYIVAKQSGRVFEELSA-VTSGVKDVRDVLKRAHDRLVAEGKETV 128

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLL 166
           LFIDE+HR S   ++ L P++E+  +  +    E PS   +K  LSR  ++   +     
Sbjct: 129 LFIDEVHRFSKSQQDALLPSVENRDVTFIAATTENPSFSVIKPLLSRSVVVKLESLEPDD 188

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
              L +R                   +RG     + + D+A  EI   + G  R    +L
Sbjct: 189 LRTLINRAVED---------------ERGLN-NEVRIRDDAVDEIIRMASGDARKTLTIL 232

Query: 227 RRVRDFAEVAHAKTITREIADAA---------LLRLAIDKMGFDQLDLRYLTMIARNFGG 277
                       +    +              +  +  DK G D  D+            
Sbjct: 233 EAAAGALTGDKERKKGAKRPVITPDVVSKVMDVATVRYDKDGDDHYDV------------ 280

Query: 278 GPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                  ISA +   R +  D    Y+ +       PR   R +M  A + +G+  P 
Sbjct: 281 -------ISAFIKSMRGSDPDATMHYLARMLRAGEDPRFIARRIMIAASEEVGMAAPQ 331


>gi|254558789|ref|YP_003065884.1| recombination protein [Methylobacterium extorquens DM4]
 gi|254266067|emb|CAX21819.1| recombination protein [Methylobacterium extorquens DM4]
          Length = 437

 Score =  139 bits (349), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 75/343 (21%), Positives = 112/343 (32%), Gaps = 51/343 (14%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D                  LRPR L E  GQ               +R+  L  ++F 
Sbjct: 1   MSDLFVSAGLETGAPRPLADRLRPRRLAEVVGQEHLTGPDGALTRLLASRS--LGSLVFW 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEI 114
           GPPG GKTT+A+++A E  ++F   S  + +  GDL  +      R       +LF+DEI
Sbjct: 59  GPPGTGKTTVARLLAHETALHFEQISA-IFSGIGDLRKVFEAARKRRATGQGTLLFVDEI 117

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +    +   P MED  + L+    E PS       LSR  ++            L  
Sbjct: 118 HRFNRAQLDAFLPVMEDGTVTLVGATTENPSFELNAALLSRARVLLFRALDAPALARLL- 176

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
                                  A+   +        E A  +    R+A    R     
Sbjct: 177 -----------------------ARAEEMDGQPLPLDEEARAALI--RMADGDGRAALTL 211

Query: 233 AEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEP 292
           AE         EI DA  L+  + +             I      G   +  ISA     
Sbjct: 212 AEEVWRSARPGEILDAETLQSLVQRRA----------PIYDKAQEGHYNL--ISALHKTV 259

Query: 293 RDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           R +  D    Y+ +            R L+ +A + +G+  P 
Sbjct: 260 RGSDPDAALYYLCRMLDAGEDRLFIARRLVRMAVEDIGLADPQ 302


>gi|218528368|ref|YP_002419184.1| recombination factor protein RarA [Methylobacterium
           chloromethanicum CM4]
 gi|218520671|gb|ACK81256.1| AAA ATPase central domain protein [Methylobacterium
           chloromethanicum CM4]
          Length = 440

 Score =  139 bits (349), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 73/342 (21%), Positives = 109/342 (31%), Gaps = 49/342 (14%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D                  LRPR L E  GQ               +R+  L  ++F 
Sbjct: 4   MSDLFVSAGLETGAPRPLADRLRPRRLAEVVGQEHLTGPDGALTRLLASRS--LGSLVFW 61

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIH 115
           GPPG GKTT+A+++A E  ++F   S        + K  + A          +LF+DEIH
Sbjct: 62  GPPGTGKTTVARLLAHETALHFEQISAIFSGIADLRKVFEAARKRRATGQGTLLFVDEIH 121

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +    +   P MED  + L+    E PS       LSR  ++            L   
Sbjct: 122 RFNRAQLDAFLPVMEDGTVTLVGATTENPSFELNAALLSRARVLLFRALDASALARLL-- 179

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                                 A+   +        E A  +    R+A    R     A
Sbjct: 180 ----------------------ARAEEMDGQPLPLDEEARAALI--RMADGDGRAALTLA 215

Query: 234 EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
           E         EI DA  L+  + +             I      G   +  ISA     R
Sbjct: 216 EEVWRSARPGEILDAETLQSLVQRRA----------PIYDKAQEGHYNL--ISALHKTVR 263

Query: 294 DAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +  D    Y+ +            R L+ +A + +G+  P 
Sbjct: 264 GSDPDAALYYLCRMLDAGEDRLFIARRLVRMAVEDIGLADPQ 305


>gi|295130734|ref|YP_003581397.1| recombination factor protein RarA [Propionibacterium acnes SK137]
 gi|291376409|gb|ADE00264.1| recombination factor protein RarA [Propionibacterium acnes SK137]
          Length = 461

 Score =  139 bits (349), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 87/337 (25%), Positives = 131/337 (38%), Gaps = 47/337 (13%)

Query: 9   SRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           S +    DA ++  LRPRT++E  GQ    +        A+        V   GPPG+GK
Sbjct: 21  SLDTPNPDAPLAVRLRPRTIDEIVGQQHLLTPGSPLRRLAEGTGAM--SVFLWGPPGVGK 78

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIV 121
           TT+A VV+      F   S  V A   D+   L     +       VLF+DE+HR S   
Sbjct: 79  TTIASVVSHATNRRFVEISA-VTAGVKDIRRELDTARRQLALGQPTVLFVDEVHRFSKAQ 137

Query: 122 EEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +++L PA+E+  + L+    E PS   +   LSR  L+          + L DR      
Sbjct: 138 QDVLLPAVENRTVTLIAATTENPSFSVISPLLSRSLLLTLKPLTEADVSSLLDR------ 191

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
               +   L+T   R        + D+A  ++   + G  R A   L      A  A   
Sbjct: 192 -ALSDPRGLRTESDR-----RYVLEDDARADLLQLAAGDARRALTYLEEAAAGASAAGTD 245

Query: 240 TITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
           TIT +I   A+ R A   D+ G    D+                   ISA +   R +  
Sbjct: 246 TITSQIVSTAVDRAAVRYDRDGDQHYDV-------------------ISAFIKSVRGSDV 286

Query: 298 DLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           D    Y+ +       PR   R L+ +A + +G+  P
Sbjct: 287 DAALHYLARMIEAGEDPRFIARRLIILASEDIGMAAP 323


>gi|50842656|ref|YP_055883.1| recombination factor protein RarA [Propionibacterium acnes
           KPA171202]
 gi|50840258|gb|AAT82925.1| uncharacterized ATPase related to the helicase subunit of the
           holliday junction resolvase [Propionibacterium acnes
           KPA171202]
          Length = 461

 Score =  139 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 87/337 (25%), Positives = 131/337 (38%), Gaps = 47/337 (13%)

Query: 9   SRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           S +    DA ++  LRPRT++E  GQ    +        A+        V   GPPG+GK
Sbjct: 21  SLDTPNPDAPLAVRLRPRTIDEIVGQQHLLTPGSPLRRLAEGTGAM--SVFLWGPPGVGK 78

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIV 121
           TT+A VV+      F   S  V A   D+   L     +       VLF+DE+HR S   
Sbjct: 79  TTIASVVSHATNRRFVEISA-VTAGVKDIRRELDTARRQLALGQPTVLFVDEVHRFSKAQ 137

Query: 122 EEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +++L PA+E+  + L+    E PS   +   LSR  L+          + L DR      
Sbjct: 138 QDVLLPAVENRTVTLIAATTENPSFSVISPLLSRSLLLTLKPLTEADVSSLLDR------ 191

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
               +   L+T   R        + D+A  ++   + G  R A   L      A  A   
Sbjct: 192 -ALSDPRGLRTESDR-----RYVLEDDARADLLQLAAGDARRALTYLEEAAAGASAAGTD 245

Query: 240 TITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
           TIT +I   A+ R A   D+ G    D+                   ISA +   R +  
Sbjct: 246 TITSQIVSTAVDRAAVRYDRDGDQHYDV-------------------ISAFIKSVRGSDV 286

Query: 298 DLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           D    Y+ +       PR   R L+ +A + +G+  P
Sbjct: 287 DAALHYLARMIEAGEDPRFIARRLIILASEDIGMAAP 323


>gi|311739533|ref|ZP_07713368.1| replication-associated recombination protein A [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311305349|gb|EFQ81417.1| replication-associated recombination protein A [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 463

 Score =  139 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 72/326 (22%), Positives = 123/326 (37%), Gaps = 47/326 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP+ L+E  GQ    +  K      +   EA   V+  GPPG GKTT+A ++A 
Sbjct: 32  PLAARMRPQNLDEVVGQDHLLAPGKPLRRLVEGSGEA--SVILYGPPGTGKTTIASLIAS 89

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAME 130
           ++G NF   S  + +    +  ++T+         R VLFIDE+HR S   ++ L  A+E
Sbjct: 90  QMGQNFVGLSA-LDSGVKQVREVITHARQELIHGRRTVLFIDEVHRFSKTQQDALLAAVE 148

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +  + L+    E PS   V            +  + L  + L D     +     E +  
Sbjct: 149 NRTVLLVAATTENPSFSVVAP--------LLSRSLLLQLHSLSDDDLRGVAKRALESD-- 198

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
                RG     + +TDEA  ++ + + G  R     L    +  +     T      + 
Sbjct: 199 -----RGLGERKIRITDEALDQLVLLAGGDARRTLTYLEAAAEAVDDGGEITPQTVTDNV 253

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
               +  D+ G    D+                   +SA +   R +  D    Y+ +  
Sbjct: 254 NKAVVRYDRDGDQHYDV-------------------VSAFIKSIRGSDVDAALHYLARMV 294

Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIP 332
                PR   R L+  A + +G+  P
Sbjct: 295 EAGEDPRFIARRLIVHASEDIGMADP 320


>gi|319644801|ref|ZP_07999034.1| YrvN protein [Bacillus sp. BT1B_CT2]
 gi|317392610|gb|EFV73404.1| YrvN protein [Bacillus sp. BT1B_CT2]
          Length = 421

 Score =  139 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 77/326 (23%), Positives = 130/326 (39%), Gaps = 53/326 (16%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            +RP  +EE  GQ       K+     +A+   L  ++  GPPG+GKT++A  +A    +
Sbjct: 7   RMRPTKIEEVLGQDHLVGEGKIIHRMVQAKH--LSSMILYGPPGIGKTSIATAIAGSTSI 64

Query: 81  NFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138
            FR  +  VI    D+ A+    +   + +L +DE+HRL    ++ L P +E+  + +M+
Sbjct: 65  AFRKLNA-VINNKKDMEAIAAEAKMSGQVILILDEVHRLDKGKQDFLLPYLENGMI-IMI 122

Query: 139 GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ----- 193
           G   +     IN                   ++ R  I   L+  + E +KT ++     
Sbjct: 123 GATTANPYHAIN-----------------PAIRSRTQI-FELHPLDPEQIKTAIKRALED 164

Query: 194 --RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK--TITREIADAA 249
             RG     +AV DEA   +A    G  R A   L       +        IT EIA+  
Sbjct: 165 KHRGLGSYDVAVDDEALDHLARGCGGDVRSALNALELAVLSTKENSEGAIRITLEIAEEC 224

Query: 250 LLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           L +     DK G    D      +   F          S   S+   A+  +    +I+ 
Sbjct: 225 LQKKGFVHDKDGDAHYD------VISAFQK--------SIRGSDVNAALHYMAR--LIEA 268

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
           G ++     R L+ IA++ +G+  P 
Sbjct: 269 GDLE--SLARRLLVIAYEDVGLASPQ 292


>gi|296197529|ref|XP_002746322.1| PREDICTED: ATPase WRNIP1-like isoform 1 [Callithrix jacchus]
          Length = 666

 Score =  139 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 66/347 (19%), Positives = 125/347 (36%), Gaps = 37/347 (10%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLG 66
           R + +       +RP TL+++ GQ  A      L+  +E        +  ++  GPPG G
Sbjct: 220 RQMLEGKPLADKMRPDTLQDYFGQSRAVGQETLLRSLLE-----TNEIPSLILWGPPGCG 274

Query: 67  KTTLAQVVARELGVNFRST--SGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRL 117
           KTTLA ++A     +           AK  D+  ++   +        + +LFIDEIHR 
Sbjct: 275 KTTLAHIIANNSKKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRF 334

Query: 118 SIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
           +   ++   P +E   + L+    E PS +     LSR  +I            +  R  
Sbjct: 335 NKSQQDTFLPHVECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAI 394

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLA---VTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
             + ++  +       +   +  +      + D+A   +A  S G  R     L+     
Sbjct: 395 NSLGIHVLDSSRPTDPLSHSSNSSSEPAIFIEDKAVDTLAYLSDGDARAGLNGLQLAV-L 453

Query: 233 AEVAHAKTITRE-----IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISA 287
           A ++  K   ++          L+     K G  +  + Y      ++         ISA
Sbjct: 454 ARLSSRKMFCKKSGQTYSPSRVLITENDVKEGLQRSHILYDRAGEEHYNC-------ISA 506

Query: 288 GLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
                R + ++    ++ +       P    R L+  A + +G+  P
Sbjct: 507 LHKSMRGSDQNASLYWLARMLEGGEDPLYVARRLVRFASEDIGLADP 553


>gi|240136936|ref|YP_002961405.1| recombination protein [Methylobacterium extorquens AM1]
 gi|240006902|gb|ACS38128.1| recombination protein [Methylobacterium extorquens AM1]
          Length = 447

 Score =  139 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 73/342 (21%), Positives = 109/342 (31%), Gaps = 49/342 (14%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D                  LRPR L E  GQ               +R+  L  ++F 
Sbjct: 11  MSDLFVSAGLETGAPRPLADRLRPRRLAEVVGQEHLTGPDGALTRLLASRS--LGSLVFW 68

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIH 115
           GPPG GKTT+A+++A E  ++F   S        + K  + A          +LF+DEIH
Sbjct: 69  GPPGTGKTTVARLLAHETALHFEQISAIFSGIADLRKVFEAARKRRATGQGTLLFVDEIH 128

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +    +   P MED  + L+    E PS       LSR  ++            L   
Sbjct: 129 RFNRAQLDAFLPVMEDGTVTLVGATTENPSFELNAALLSRARVLLFRALDAPALARLL-- 186

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                                 A+   +        E A  +    R+A    R     A
Sbjct: 187 ----------------------ARAEEMDGQPLPLDEEARAALI--RMADGDGRAALTLA 222

Query: 234 EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
           E         EI DA  L+  + +             I      G   +  ISA     R
Sbjct: 223 EEVWRSARPGEILDAETLQSLVQRRA----------PIYDKAQEGHYNL--ISALHKTVR 270

Query: 294 DAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +  D    Y+ +            R L+ +A + +G+  P 
Sbjct: 271 GSDPDAALYYLCRMLDAGEDRLFIARRLVRMAVEDIGLADPQ 312


>gi|326392805|ref|ZP_08214061.1| Holliday junction DNA helicase RuvB domain [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325991153|gb|EGD49889.1| Holliday junction DNA helicase RuvB domain [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 111

 Score =  139 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 64/110 (58%), Positives = 82/110 (74%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
            E +L+++ +QEDA    LRPR L E+ GQ +    LK++IEAAK R E LDHVL  GPP
Sbjct: 2   EERILTQSFTQEDASEYSLRPRWLSEYIGQQKIKEELKIYIEAAKMRKEPLDHVLLYGPP 61

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDE 113
           GLGKTTLA V++ E+GV  + TSGP I K+GDLAA+LTNL++ D+LFIDE
Sbjct: 62  GLGKTTLATVISNEMGVGIKITSGPAIEKSGDLAAILTNLQENDILFIDE 111


>gi|258405684|ref|YP_003198426.1| recombination factor protein RarA [Desulfohalobium retbaense DSM
           5692]
 gi|257797911|gb|ACV68848.1| AAA ATPase central domain protein [Desulfohalobium retbaense DSM
           5692]
          Length = 404

 Score =  139 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 75/324 (23%), Positives = 124/324 (38%), Gaps = 55/324 (16%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
            +       +RP +L++F GQ      L+    A++     L  +LF GPPG GK+TLA 
Sbjct: 3   HEHRPLAERIRPHSLDDFIGQTHLRQRLQALQNASR-----LSSLLFFGPPGCGKSTLAL 57

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           + A+  G  +   S P +     LA L   +++ D+L +DE+HR S   ++   P +E  
Sbjct: 58  MFAKAHGGAYLRVSAPEVG----LANLRKQIQNTDILILDELHRFSKAQQDFFLPLLETG 113

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
            + L+    E PS    +  LSR  ++                            ++L  
Sbjct: 114 DIILLATTTENPSFSITRQLLSRLHVLRL---------------------RPLGPQELLD 152

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           + QRG +  GL + D++   +   + G  R    LL     +AE    +    E   +AL
Sbjct: 153 LAQRGQQELGLHLPDKSLELLCTYAGGDGRTLLNLLE----YAEELSEEQRDPERLKSAL 208

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
                              ++ R   GG    E  SA +   R +  D    Y+      
Sbjct: 209 P-----------------EIVIRGDRGGDTHYELASALIKSIRGSDPDAALYYLASMLES 251

Query: 311 QRTPR--GRLLMPIAWQHLGIDIP 332
              PR   R L+  A + +G+  P
Sbjct: 252 GEDPRFVCRRLVLSASEDIGLGDP 275


>gi|284991584|ref|YP_003410138.1| AAA ATPase central domain-containing protein [Geodermatophilus
           obscurus DSM 43160]
 gi|284064829|gb|ADB75767.1| AAA ATPase central domain protein [Geodermatophilus obscurus DSM
           43160]
          Length = 445

 Score =  139 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 77/328 (23%), Positives = 124/328 (37%), Gaps = 57/328 (17%)

Query: 21  LLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
            +RPR+L+E  GQ         L+  +EA     +    ++  GPPG GKTTLA V++  
Sbjct: 24  RMRPRSLDEVVGQSHLLGPRAPLRRLVEA-----DEPMSLVLYGPPGTGKTTLAHVISLA 78

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAME 130
               F   S  + A   ++ A++ + +        R VLFIDE+HR S   ++ L  A+E
Sbjct: 79  TKRQFVQLSA-LDAGVKEVRAVIASAKRELTYAGRRTVLFIDEVHRFSKTQQDSLLSAVE 137

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           D  + L+    E P    V   LSR  ++A          PL D     +       +  
Sbjct: 138 DRIVSLIAATTENPFFSVVSPLLSRSLVLAL--------QPLSDDDVRSLLRRALTSD-- 187

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
                RG     + ++ EA   +   + G  R A   L      A  A    I     + 
Sbjct: 188 -----RGLDG-AVTLSPEAEEHLVRIAGGDGRKALTALESGAGAALAAGLTEIDLATLET 241

Query: 249 ALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           A+ + A   D+ G    D+   + + ++  G  V                 D    Y+ +
Sbjct: 242 AVAQAAVRYDRQGDQHYDVA--SALIKSIRGSDV-----------------DAALHYLAR 282

Query: 307 QGFIQRTPR--GRLLMPIAWQHLGIDIP 332
                  PR   R L+  A + +G+  P
Sbjct: 283 MVEAGEDPRFIARRLVISASEDIGMADP 310


>gi|188579618|ref|YP_001923063.1| recombination factor protein RarA [Methylobacterium populi BJ001]
 gi|179343116|gb|ACB78528.1| AAA ATPase central domain protein [Methylobacterium populi BJ001]
          Length = 440

 Score =  139 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 73/342 (21%), Positives = 110/342 (32%), Gaps = 49/342 (14%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D       +          LRPR L E  GQ               +R+  L  ++F 
Sbjct: 4   MSDLFASAGLDAGAPRPLADRLRPRRLSEVVGQEHLTGPDGALTRLLASRS--LGSLVFW 61

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIH 115
           GPPG GKTT+A+++A E  ++F   S        + K  + A          +LF+DEIH
Sbjct: 62  GPPGTGKTTVARLLAHETELHFEQISAIFSGIADLRKVFEAARKRRATGQGTLLFVDEIH 121

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +    +   P MED  + L+    E PS       LSR  ++            L   
Sbjct: 122 RFNRSQLDAFLPVMEDGTVTLVGATTENPSFELNAALLSRARVLLFRALDATALARLL-- 179

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                                 A+   +        E A  +    R+A    R     A
Sbjct: 180 ----------------------ARAEEMEGQALPLDEEARAALI--RMADGDGRAALTLA 215

Query: 234 EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
           E         EI DA  L+  + +             I      G   +  ISA     R
Sbjct: 216 EEVWRSARPGEILDAEKLQTLVQRRA----------PIYDKAQEGHYNL--ISALHKTVR 263

Query: 294 DAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +  D    Y+ +            R L+ +A + +G+  P 
Sbjct: 264 GSDPDAALYYLCRMLDAGEDRLFIARRLVRMAVEDIGLADPQ 305


>gi|319947814|ref|ZP_08022008.1| recombination factor protein RarA [Dietzia cinnamea P4]
 gi|319438538|gb|EFV93464.1| recombination factor protein RarA [Dietzia cinnamea P4]
          Length = 417

 Score =  139 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 79/329 (24%), Positives = 123/329 (37%), Gaps = 63/329 (19%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            +RPRTL+E  GQ              + R      V+  GPPG GKTTLA +VA   G 
Sbjct: 4   RMRPRTLDEVIGQEHLLRPNSPLRRLVEGRGG--SSVILYGPPGTGKTTLANLVASTSGR 61

Query: 81  NFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           +F + S  + A   D+ A++ +         R VLFIDE+HR S   ++ L  A+E+  +
Sbjct: 62  HFVALSA-LSAGVKDVRAVIDDARTRQVHGQRTVLFIDEVHRFSKSQQDALLAAVENGIV 120

Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            L+    E P    +   LSR                      +   L   +   +  ++
Sbjct: 121 LLVAATTENPHFSVIAPLLSR---------------------SLIAELQGLDDAGVAAVL 159

Query: 193 QRGAKLT-----GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           +R           + +TD AA +I   S G  R +  +L         A    +T EI +
Sbjct: 160 RRAVSDERGLAGRVELTDAAAEDIVRLSGGDARRSLTILEAAA---GAAADGVVTPEIVE 216

Query: 248 AALLR--LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
            +L    +  D+ G    D+                    SA +   R +  D    Y+ 
Sbjct: 217 LSLDAAPVRYDRDGDQHYDV-------------------TSAFIKSIRGSDVDAALHYLA 257

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           +       PR   R LM  A + +G+  P
Sbjct: 258 RMLVAGEDPRFIARRLMVHASEDIGMADP 286


>gi|302541110|ref|ZP_07293452.1| AAA family ATPase [Streptomyces hygroscopicus ATCC 53653]
 gi|302458728|gb|EFL21821.1| AAA family ATPase [Streptomyces himastatinicus ATCC 53653]
          Length = 455

 Score =  138 bits (348), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 84/358 (23%), Positives = 130/358 (36%), Gaps = 68/358 (18%)

Query: 2   MDREGLLSRNVSQEDADIS------LLRPRTLEEFTGQVEAC---SNLKVFIEAAKARAE 52
           M+ +   +    +++ D S       +RPRTL+E  GQ       S L+  +        
Sbjct: 1   MEPDLFTAAAEDRQEKDPSSSPLAVRMRPRTLDEVVGQQHLLRPGSPLRRLVGEGSGGPA 60

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------ED 105
               VL  GPPG+GKTTLA VV++     F   S  + A   ++ A++            
Sbjct: 61  GPSSVLLWGPPGIGKTTLAYVVSQATQKRFVELSA-ITAGVKEVRAVIDGARRSSGAYGR 119

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAAT--- 160
             VLF+DEIHR S   ++ L PA+E+  + L+    E P    +   LSR  L+      
Sbjct: 120 ETVLFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYFSVISPLLSRSLLLTLESLT 179

Query: 161 --TRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGT 218
                GLL   L D  G+   +     ++ +  + R A                    G 
Sbjct: 180 DDDLRGLLHRALADERGLGGAVTL--PDEAEAHLLRIAG-------------------GD 218

Query: 219 PRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFG 276
            R A   L      A       IT    + A+ R A   D+ G    D+   + + ++  
Sbjct: 219 ARRALTALEAGAGSAIAKGEAEITLTTLEEAVDRAAVTYDRAGDQHYDVA--SALIKSIR 276

Query: 277 GGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           G  V                 D    Y+ +       PR   R LM  A + +G+  P
Sbjct: 277 GSDV-----------------DAALHYLARMIEAGEDPRFIARRLMISASEDIGLADP 317


>gi|261405433|ref|YP_003241674.1| AAA ATPase central domain-containing protein [Paenibacillus sp.
           Y412MC10]
 gi|261281896|gb|ACX63867.1| AAA ATPase central domain protein [Paenibacillus sp. Y412MC10]
          Length = 435

 Score =  138 bits (348), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 56/238 (23%), Positives = 96/238 (40%), Gaps = 26/238 (10%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD   +              +RP +L+E+ GQ       K+   A +A  + +  +L  G
Sbjct: 1   MDLFSIGREGDRNSRLLADRMRPSSLDEYIGQEHIIGPGKLLRRAIEA--DQVSSILLYG 58

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEI 114
           PPG GKTTLA +++++   +F   +  V A   D+  ++   +        + +LF+DE+
Sbjct: 59  PPGCGKTTLAHIISQQTKGHFVRLNA-VEATVKDVREVIEQAQSNRSLYGTKTILFLDEV 117

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++ L PA+E+  +  +    E P        +SR TL         L    +D
Sbjct: 118 HRFNSSRQDALLPAVENGTIIFIGATTENPFHYVNGALMSRSTLF-------QLQPLTKD 170

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
              I +R    + +       +G     L   +EA   IA  + G  R A   L    
Sbjct: 171 HSMIAMRRALIDQD-------KGLGFMDLKADEEALEHIAAMANGDIRRALNALELAA 221


>gi|114327245|ref|YP_744402.1| recombination factor protein RarA [Granulibacter bethesdensis
           CGDNIH1]
 gi|114315419|gb|ABI61479.1| ATPase, AAA family [Granulibacter bethesdensis CGDNIH1]
          Length = 452

 Score =  138 bits (348), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 71/327 (21%), Positives = 117/327 (35%), Gaps = 51/327 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP +L++  GQ              ++R   L  ++  GPPG GKTT+A+++AR
Sbjct: 31  PLADRLRPASLDDVVGQDHLLGAEGPLRRMTESR--VLSSIILWGPPGTGKTTIARLLAR 88

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
              ++F + S        + K  + A          +LF DEIHR +   ++   P +ED
Sbjct: 89  STDLHFEAISAIQSGVADLRKVFEAARQRRAAGKGTLLFCDEIHRFNRGQQDAFLPVVED 148

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             + L+    E PS       LSR  ++            L  R               +
Sbjct: 149 GTVTLVGATTENPSFELNSALLSRCRVMVLRRLDEAALERLLVR--------------AE 194

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
             ++R      L V+ EA   +   + G  R    L+ +V  FA     + +  +    A
Sbjct: 195 ERMER-----PLPVSAEAREALVAMASGDGRYMLNLVEQVYTFA--GGDQVLDMQTLGHA 247

Query: 250 LLRL--AIDKMGFDQLDLRYLTMIARNFGGG-PVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           L R     DK G    D   L+   ++  G  P      +A +    +A E +       
Sbjct: 248 LQRRPPVHDKAGDGHYD--LLSCFHKSLRGSDPQAALYYAARMMVAGEAAETVF------ 299

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
                     R L   A + +G+  P 
Sbjct: 300 ----------RRLACAASEDVGMADPQ 316


>gi|148700412|gb|EDL32359.1| Werner helicase interacting protein 1, isoform CRA_b [Mus musculus]
          Length = 590

 Score =  138 bits (348), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 66/342 (19%), Positives = 123/342 (35%), Gaps = 35/342 (10%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLG 66
           R + +       +RP TL+++ GQ  A      L+  +EA +     +  ++  GPPG G
Sbjct: 236 RQMLEGKPLADKMRPDTLQDYIGQSRAVGQETLLRSLLEANE-----IPSLILWGPPGCG 290

Query: 67  KTTLAQVVARELGVNFRST--SGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRL 117
           KTTLA ++A     +           AK  D+  ++   +        + +LFIDEIHR 
Sbjct: 291 KTTLAHIIANNSKKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRF 350

Query: 118 SIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
           +   ++   P +E   + L+    E PS +     LSR  +I            +  R  
Sbjct: 351 NKSQQDTFLPHVECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAI 410

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLA---VTDEAACEIAMRSRGTPRIAGRLLRRVR-- 230
             + ++  +       +   +  +      + D+A   +A  S G  R     L+     
Sbjct: 411 NSLGIHVLDSSRPTDPLSHSSNCSSEPSVFIEDKAVDTLAYLSDGDARTGLNGLQLAVLA 470

Query: 231 --DFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAG 288
                +V   K+         L+     K G  +  + Y      ++         ISA 
Sbjct: 471 RLSSRKVFCKKSGQTYSPSRVLITENDVKEGLQRSHILYDRAGEEHYNC-------ISAL 523

Query: 289 LSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLG 328
               R + ++    ++ +       P    R L+  A + +G
Sbjct: 524 HKAMRGSDQNASLYWLARMLEGGEDPLYVARRLVRFASEDIG 565


>gi|302335915|ref|YP_003801122.1| Recombination protein MgsA [Olsenella uli DSM 7084]
 gi|301319755|gb|ADK68242.1| Recombination protein MgsA [Olsenella uli DSM 7084]
          Length = 462

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 80/329 (24%), Positives = 118/329 (35%), Gaps = 40/329 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP+TL+ F GQ +A         A +   + L  VL  GP G GKTTLA+++A 
Sbjct: 18  PLAARVRPQTLDGFVGQRQAVGEGSWLRRAIE--HDTLSSVLLYGPAGTGKTTLARIIAN 75

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAM 129
                F   S  V     DL   +   E        R +LF+DEIHR +   ++ L  A+
Sbjct: 76  TTHAEFVEVSA-VTGTVRDLRREIDAAESRLLASGRRTILFVDEIHRFNRTQQDALLHAV 134

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ED  + L+    E P        +SR  ++  T        PL D     +     + E 
Sbjct: 135 EDRTVVLVGATTENPYFEVNSALISRSRVVELT--------PLDDEAVRLLVRRAVDDEF 186

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA-KTITREIA 246
                          + DEA  EI   S G  R A   L      A  A      TRE  
Sbjct: 187 GLN--------GAFELDDEAIEEIVTLSGGDGRAALTSLELASQMAAPAGDVAQATRESP 238

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
                R        +    R L+        G V  + ISA +   R +  D +  ++ +
Sbjct: 239 VRITSRHV-----LEANPRRGLS----YDKSGDVHYDVISAFIKSMRGSDPDAVLYWLAR 289

Query: 307 QGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                  P+   R +   A + +G   P 
Sbjct: 290 MIDAGEDPKFIARRIFIQASEDVGNADPQ 318


>gi|315613661|ref|ZP_07888568.1| AAA family ATPase [Streptococcus sanguinis ATCC 49296]
 gi|315314352|gb|EFU62397.1| AAA family ATPase [Streptococcus sanguinis ATCC 49296]
          Length = 429

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 72/326 (22%), Positives = 121/326 (37%), Gaps = 42/326 (12%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            D     +RP+T+++  GQ       K+     +A    L  ++  GPPG+GKT++A  +
Sbjct: 8   PDNLALRMRPKTIDQVIGQEHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAI 65

Query: 75  ARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           A      FR+ +  V +K      A         VL +DEIHRL    ++ L P +E   
Sbjct: 66  AGTTKYAFRTFNATVDSKKRLQEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGL 125

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + ++    E P         SR  +    T         QD  G         I+   T 
Sbjct: 126 VIMIGATTENPFFSVTPAIRSRVQIFELETLSN------QDVKGA--------IQIALTD 171

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI--TREIADAA 249
            +RG     + + ++A   IA  + G  R A   L                 T +I + +
Sbjct: 172 PERGFD-FQVELDEDALDFIATSTNGDLRSAFNSLDLAVLSTPENDKGIRHITLDIMENS 230

Query: 250 LLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           L R    +DK G    D+  L+ + ++  G  V              ++       +I+ 
Sbjct: 231 LQRSYITMDKDGDGHYDV--LSALQKSIRGSDVDA------------SLHYAAR--LIEA 274

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
           G +      R L  IA++ +G+  P 
Sbjct: 275 GDLP--SLARRLTVIAYEDIGLANPE 298


>gi|332662821|ref|YP_004445609.1| AAA ATPase central domain-containing protein [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332331635|gb|AEE48736.1| AAA ATPase central domain protein [Haliscomenobacter hydrossis DSM
           1100]
          Length = 425

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 72/335 (21%), Positives = 116/335 (34%), Gaps = 61/335 (18%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP  L ++ GQ        V  +A    A  L  ++  GPPG+GKTTLA ++A 
Sbjct: 3   PLAERMRPTRLADYLGQEHLVGEGSVLRQA--LAAGFLPSIILWGPPGVGKTTLANILAS 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAM 129
           ELG  F S S  + A   D+   +   E          +LFIDEIHR S   ++ L  A+
Sbjct: 61  ELGRPFYSLSA-IAAGVKDVRDTIQKAEQQRFFNRPNPILFIDEIHRFSKSQQDALLGAV 119

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E   + LM    E PS   +   LSR  +                           E + 
Sbjct: 120 EKGVITLMGATTENPSFEVIPALLSRCQVYVLK---------------------LLETDQ 158

Query: 188 LKTIVQRGAKLTGLAVTDEAACE----IAMRSRGTPRIAGRLLRRVRDFA-EVAHAKTIT 242
           L  ++Q   +        +   E    +   S G  R    +L  +   A  V     + 
Sbjct: 159 LLQLIQEALQKDEYLRDKKVRFESYDAMLHYSGGDARKLYNILELITSQAPNVNGEIVVD 218

Query: 243 REIADAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
             +    L +   A DK G    D+                    SA +   R +  +  
Sbjct: 219 DALVTNILQQHITAYDKGGEQHYDVA-------------------SAFIKSIRGSDPNAA 259

Query: 301 EPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
             ++ +        +   R ++  A + +G+  P+
Sbjct: 260 VYWLARMIEGGEEVKFIARRMVIAAAEDVGLANPN 294


>gi|156718142|ref|NP_001096576.1| ATPase WRNIP1 [Bos taurus]
 gi|151553722|gb|AAI50137.1| Werner helicase interacting protein 1 [Bos taurus]
          Length = 638

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 68/347 (19%), Positives = 127/347 (36%), Gaps = 37/347 (10%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLG 66
           R + +       +RP  L++F GQ  A      L+  +EA++     +  ++  GPPG G
Sbjct: 192 RQLLEGKPLADTMRPDALQDFVGQGRAVGPETLLRSLLEASE-----VPSLILWGPPGCG 246

Query: 67  KTTLAQVVARELGVNFRST--SGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRL 117
           KTTLA ++A     +           AK  D+  ++   +        + +LFIDEIHR 
Sbjct: 247 KTTLAHIIANNSKKHSIRFVTLSATSAKTTDVRDVIKQAQNEKRFFKRKTILFIDEIHRF 306

Query: 118 SIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
           +   ++   P +E   + L+    E PS +     LSR  +I            +  R  
Sbjct: 307 NKSQQDTFLPHVECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAVVTILMRAV 366

Query: 176 IPIRLNFYEIEDLKTIVQ---RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
             + +   +       +      +  + + + D+A   +A  S G  R     L+     
Sbjct: 367 NSLGIQVLDSSRPADPLSHGGNSSSESSVLIEDKAVDTLAHLSDGDARAGLNGLQLAV-L 425

Query: 233 AEVAHAKTITRE-----IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISA 287
           A ++  KT  ++          L+  +  K G  +  + Y      ++         ISA
Sbjct: 426 ARLSARKTFGKKGGQSYPPSRVLVTESDVKEGLQRSHILYDRAGEEHYNC-------ISA 478

Query: 288 GLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
                R +       ++ +       P    R L+  A + +G+  P
Sbjct: 479 LHKSMRGSDSSAALYWLGRMLEGGEDPLYVARRLVRFASEDVGLADP 525


>gi|283783289|ref|YP_003374043.1| recombination factor protein RarA [Gardnerella vaginalis 409-05]
 gi|283441280|gb|ADB13746.1| recombination factor protein RarA [Gardnerella vaginalis 409-05]
          Length = 462

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 83/350 (23%), Positives = 131/350 (37%), Gaps = 46/350 (13%)

Query: 2   MDREGLLSRNVSQE--DADISLLRPRTLEEFTGQVEACSNLKVFIEAA----KARAEALD 55
           M+++   + +            +RP ++E+  GQ  A          A    K    A  
Sbjct: 1   MEQDLFAASSAPSNVTRPLAVRMRPSSIEDVLGQSHALKEGSPLRRLANPQSKGSLTAPS 60

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DV 108
            V+  GPPG+GKTTLA +VAR+ G  F   S  V +   D+ A+L    +R        V
Sbjct: 61  SVVLFGPPGVGKTTLAYIVARQSGRVFEELSA-VTSGVKDVRAVLDRAHERLVSNGQETV 119

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLL 166
           LFIDE+HR S   ++ L P++E+  +  +    E PS   +K  LSR  ++   +     
Sbjct: 120 LFIDEVHRFSKSQQDALLPSVENRDVTFIGATTENPSFSIIKPLLSRSVVVKLAS----- 174

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
                             +EDL T+++R   LT     +              R++G   
Sbjct: 175 ----------------LSVEDLHTLIERA--LTSENGLNNQLKIDDDAIDSIIRLSGGDA 216

Query: 227 RRVRDFAEVAHAKTITREIADAALLRLAIDK-MGFDQLDLRYLTMIARNFGGGPVGIETI 285
           R+     E A          D AL        +  D +     T   R    G    + I
Sbjct: 217 RKTLTILEAAAGAVT----GDVALQHGKKKPVITDDIVSNVMDTTTVRYDKDGDDHYDVI 272

Query: 286 SAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           SA +   R +  D    Y+ +       PR   R +M  A + +G+  P 
Sbjct: 273 SAFIKSMRGSDVDASLHYLARMLRAGEDPRFIARRIMIAAAEEVGMAAPQ 322


>gi|229552006|ref|ZP_04440731.1| crossover junction endodeoxyribonuclease [Lactobacillus rhamnosus
           LMS2-1]
 gi|229314583|gb|EEN80556.1| crossover junction endodeoxyribonuclease [Lactobacillus rhamnosus
           LMS2-1]
          Length = 462

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 69/319 (21%), Positives = 111/319 (34%), Gaps = 41/319 (12%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            +RP+ L+E  GQ E     ++      A    L  ++  GPPG GKT++A  +A     
Sbjct: 39  RMRPQNLDEVVGQQELVGPGRIIRRMVSAH--RLSSMILYGPPGTGKTSIASAIAGSTKY 96

Query: 81  NFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137
            FR  +     K    + A    +    +L +DEIHRL    ++ L P +E  ++ L+  
Sbjct: 97  AFRILNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPLLESGRIVLIGA 156

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
             E P         SR  +           +   DR                   +RG  
Sbjct: 157 TTENPYMNIQPAIRSRTQIFQVKPLTPTDISTAIDR--------------ALADNKRGLG 202

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE--IADAALLR--L 253
              + +T EA   +   + G  R A   L             TIT +      +L +  +
Sbjct: 203 KYQVDLTPEARDYLTHTTNGDLRAALNGLELAVLSTPAKSDGTITIDLTTIQQSLQKPAI 262

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
           + D  G    D      I   F          S   S+   A+  L    +I  G +   
Sbjct: 263 SGDTNGDAHYD------IISAFQK--------SIRGSDVNAALHYLAR--LIAIGDLNSI 306

Query: 314 PRGRLLMPIAWQHLGIDIP 332
              R L+ IA++ +G+  P
Sbjct: 307 T--RRLLVIAYEDIGLANP 323


>gi|332246191|ref|XP_003272236.1| PREDICTED: ATPase WRNIP1 isoform 1 [Nomascus leucogenys]
          Length = 638

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 65/344 (18%), Positives = 123/344 (35%), Gaps = 31/344 (9%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           R + Q       +RP TL+++ GQ  A     +     +     +  ++  GPPG GKTT
Sbjct: 192 RQMLQGKPLADTMRPDTLQDYFGQSRAVGQDTLLRSLLETNE--IPSLILWGPPGCGKTT 249

Query: 70  LAQVVARELGVNFRST--SGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSII 120
           LA ++A     +           AK  D+  ++   +        + +LFIDEIHR +  
Sbjct: 250 LAHIIANNSKKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKS 309

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++   P +E   + L+    E PS +     LSR  +I            +  R    +
Sbjct: 310 QQDTFLPHVECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAINSL 369

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLA---VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
            ++  +       +   +  +      + D+A   +A  S G  R     L+     A +
Sbjct: 370 GIHVLDSSRPTDPLSHSSNSSSEPAMFIEDKAVDTLAYLSDGDARAGLNGLQLAV-LARL 428

Query: 236 AHAKTITRE-----IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
           +  K   ++          L+     K G  +  + Y      ++         ISA   
Sbjct: 429 SSRKMFCKKSGQSYSPSRVLITENDVKEGLQRSHILYDRAGEEHYNC-------ISALHK 481

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
             R + ++    ++ +       P    R L+  A + +G+  P
Sbjct: 482 SMRGSDQNASLYWLARMLEGGEDPLYVARRLVRFASEDIGLADP 525


>gi|171743312|ref|ZP_02919119.1| hypothetical protein BIFDEN_02443 [Bifidobacterium dentium ATCC
           27678]
 gi|171278926|gb|EDT46587.1| hypothetical protein BIFDEN_02443 [Bifidobacterium dentium ATCC
           27678]
          Length = 458

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 78/358 (21%), Positives = 127/358 (35%), Gaps = 62/358 (17%)

Query: 2   MDREGLLSRNVSQE--DADISLLRPRTLEEFTGQVEACSNLKVFIE----AAKARAEALD 55
           M  +   +    +E        +RP T++E  GQ                A++    A  
Sbjct: 1   MTEDLFGAMEAPEEMTRPLAVRMRPSTVDEVVGQGRVLGEGSPLRRLANPASRKSLTAPS 60

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DV 108
            ++  GPPG+GKTTLA +VA++ G  F   S  V +   D+  +L    DR        V
Sbjct: 61  SIILFGPPGVGKTTLAYIVAKQSGRVFEELSA-VTSGVKDVRDVLKRAHDRLVAEGKETV 119

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLL 166
           LFIDE+HR S   ++ L P++E+  +  +    E PS   +K  LSR  ++   +     
Sbjct: 120 LFIDEVHRFSKSQQDALLPSVENRDVTFIAATTENPSFSVIKPLLSRSVVVKLESLEPDD 179

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
              L +R                   +RG     + + D+A  EI   + G  R    +L
Sbjct: 180 LRTLINRAVED---------------ERGLN-NEVRIRDDAVDEIIRMASGDARKTLTIL 223

Query: 227 RRVRDFAEVAHAKTITREIADAA---------LLRLAIDKMGFDQLDLRYLTMIARNFGG 277
                       +    +              +  +  DK G D  D+            
Sbjct: 224 EAAAGALTGDKERKKGAKRPVITPDVVSKVMDVATVRYDKDGDDHYDV------------ 271

Query: 278 GPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                  ISA +   R +  D    Y+ +       PR   R +M  A + +G+  P 
Sbjct: 272 -------ISAFIKSMRGSDPDATMHYLARMLRAGEDPRFIARRIMIAASEEVGMAAPQ 322


>gi|308181125|ref|YP_003925253.1| recombination factor protein RarA [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|308046616|gb|ADN99159.1| recombination factor protein RarA [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 426

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 70/323 (21%), Positives = 121/323 (37%), Gaps = 41/323 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+TL++  GQ +     K+     KA+   L  ++  GPPG GKT++A  +A 
Sbjct: 4   PLAYRMRPKTLKDVVGQQQLVGPGKIIARMVKAK--RLSSMILYGPPGTGKTSIASAIAG 61

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR  +    +K    + A    +    +L +DEIHRL    ++ L P +E  ++ 
Sbjct: 62  STKYAFRMLNAATDSKKQLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPHLESGRII 121

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           L+    E P         SR  +            PL D          + +E      +
Sbjct: 122 LIGATTENPYISINPAIRSRTQIFQVF--------PLTDD------DIQHAVERALADEK 167

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT--ITREIADAALL 251
            G     + +   A   +   + G  R A   L      +  A   T  I+++  +  L 
Sbjct: 168 NGLGSYHVDLAPAAMHHLCTATNGDLRSALNGLELAVLSSSPADDGTIAISQQTIEECLQ 227

Query: 252 RLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           + A+  DK G    D      +   F          S   S+   A+  L    +++ G 
Sbjct: 228 KKALSADKDGDTHYD------VISAFQK--------SIRGSDVNAALHYLAR--LVEAGD 271

Query: 310 IQRTPRGRLLMPIAWQHLGIDIP 332
           ++     R LM IA++ +G+  P
Sbjct: 272 LKSIM--RRLMVIAYEDIGLANP 292


>gi|145258000|ref|XP_001401914.1| AAA family ATPase [Aspergillus niger CBS 513.88]
 gi|134074518|emb|CAK38812.1| unnamed protein product [Aspergillus niger]
          Length = 531

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 69/332 (20%), Positives = 123/332 (37%), Gaps = 69/332 (20%)

Query: 20  SLLRPRTLEEFTGQVEAC--SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
             +RPRTL++  GQ        L+  IE      + +  ++  G PG GKTT+A+V+A  
Sbjct: 124 ERMRPRTLDDVCGQELVGPNGVLRGLIE-----QDRVPSMILWGGPGTGKTTIARVIASM 178

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAME 130
           +G  F   +    +   +   + ++ +        + ++F DEIHR S   +++    +E
Sbjct: 179 VGSRFVEINS-TSSGVAECKKIFSDAKSELGLTGRKTIIFCDEIHRFSKSQQDVFLGPVE 237

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
             Q+ L+    E PS +     LSR      +                         ED+
Sbjct: 238 SGQVTLIGATTENPSFKVQNALLSRCRTFTLSK---------------------LTDEDI 276

Query: 189 KTIVQRGAKLTGLAV------TDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           K+I+ R  +L G          +E    +A  + G  R +  LL    D ++      +T
Sbjct: 277 KSILHRALRLEGPNYSPSELVDEELIDYLARFADGDARTSLNLLELAMDLSKRPG---MT 333

Query: 243 REIADAALLRL-AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           ++    +L +    D+ G    D                   TISA     R +  D   
Sbjct: 334 KDEIKRSLTKTLVYDRAGDQHYD-------------------TISAFHKSIRGSDPDAAL 374

Query: 302 PYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
            Y+ +       P    R L+ +A + +G+  
Sbjct: 375 YYLARMIQSGEDPLYIARRLIVVASEDIGLAD 406


>gi|52081232|ref|YP_080023.1| recombination factor protein RarA [Bacillus licheniformis ATCC
           14580]
 gi|52786612|ref|YP_092441.1| recombination factor protein RarA [Bacillus licheniformis ATCC
           14580]
 gi|52004443|gb|AAU24385.1| Replication factor C conserved domain [Bacillus licheniformis ATCC
           14580]
 gi|52349114|gb|AAU41748.1| YrvN [Bacillus licheniformis ATCC 14580]
          Length = 421

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 77/326 (23%), Positives = 131/326 (40%), Gaps = 53/326 (16%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            +RP  +EE  GQ       K+     +A+   L  ++  GPPG+GKT++A  +A    +
Sbjct: 7   RMRPTKIEEVLGQDHLVGEGKIIHRMVQAKH--LSSMILYGPPGIGKTSIATAIAGSTSI 64

Query: 81  NFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138
            FR  +  VI    D+ A+    +   + +L +DE+HRL    ++ L P +E+  + +M+
Sbjct: 65  AFRKLNA-VINNKKDMEAIAAEAKMSGQVILILDEVHRLDKGKQDFLLPYLENGMI-IMI 122

Query: 139 GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ----- 193
           G   +     IN                   ++ R  I   L+  + E +KT ++     
Sbjct: 123 GATTANPYHAIN-----------------PAIRSRTQI-FELHPLDPEQIKTAIKRALED 164

Query: 194 --RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK--TITREIADAA 249
             RG     +AV DEA   +A    G  R A   L       +        IT EIA+  
Sbjct: 165 KHRGLGSYDVAVDDEALDHLARGCGGDVRSALNALELAVLSTKENSEGAIRITLEIAEEC 224

Query: 250 LLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           L + +   DK G    D      +   F          S   S+   A+  +    +I+ 
Sbjct: 225 LQKKSFVHDKDGDAHYD------VISAFQK--------SIRGSDVNAALHYMAR--LIEA 268

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
           G ++     R L+ IA++ +G+  P 
Sbjct: 269 GDLE--SLARRLLVIAYEDVGLASPQ 292


>gi|291485161|dbj|BAI86236.1| recombination factor protein RarA [Bacillus subtilis subsp. natto
           BEST195]
          Length = 421

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 67/324 (20%), Positives = 122/324 (37%), Gaps = 41/324 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP  +E+  GQ    +  K+     +A+   L  ++  GPPG+GKT++A  +A 
Sbjct: 3   PLAYRMRPTKIEDIIGQQHLVAEDKIIGRMVQAKH--LSSMILYGPPGIGKTSIATAIAG 60

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
              + FR  +  +  K   ++ A    +  + +L +DE+HRL    ++ L P +E+  + 
Sbjct: 61  STSIAFRKLNAVINNKKDMEIVAQEAKMSGQVILILDEVHRLDKGKQDFLLPYLENGMII 120

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           L+      P         SR  +         L     +R                    
Sbjct: 121 LIGATTANPYHAINPAIRSRTQIFELEPLTPDLIKQALER--------------ALHDEH 166

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT--ITREIADAALL 251
           RG     +++ D+A    A    G  R A   L       + +      IT E A+  L 
Sbjct: 167 RGLGTYSVSIDDQAMEHFAHGCGGDVRSALNALELAVLSTKESADGEIHITLETAEECLQ 226

Query: 252 R--LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           +   + DK G    D+  L+   ++  G            S+   A+  L    +I+ G 
Sbjct: 227 KKSFSHDKDGDAHYDV--LSAFQKSIRG------------SDANAALHYLAR--LIEAGD 270

Query: 310 IQRTPRGRLLMPIAWQHLGIDIPH 333
           ++     R L+ IA++ +G+  P 
Sbjct: 271 LESI--ARRLLVIAYEDIGLASPQ 292


>gi|258539421|ref|YP_003173920.1| AAA family ATPase [Lactobacillus rhamnosus Lc 705]
 gi|257151097|emb|CAR90069.1| ATPase, AAA family [Lactobacillus rhamnosus Lc 705]
          Length = 431

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 69/319 (21%), Positives = 111/319 (34%), Gaps = 41/319 (12%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            +RP+ L+E  GQ E     ++      A    L  ++  GPPG GKT++A  +A     
Sbjct: 8   RMRPQNLDEVVGQQELVGPGRIIRRMVSAH--RLSSMILYGPPGTGKTSIASAIAGSTKY 65

Query: 81  NFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137
            FR  +     K    + A    +    +L +DEIHRL    ++ L P +E  ++ L+  
Sbjct: 66  AFRILNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPLLESGRIVLIGA 125

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
             E P         SR  +           +   DR                   +RG  
Sbjct: 126 TTENPYMNIQPAIRSRTQIFQVKPLTPTDISTAIDR--------------ALADNKRGLG 171

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE--IADAALLR--L 253
              + +T EA   +   + G  R A   L             TIT +      +L +  +
Sbjct: 172 KYQVDLTPEARDYLTHTTNGDLRAALNGLELAVLSTPAKSDGTITIDLTTIQQSLQKPAI 231

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
           + D  G    D      I   F          S   S+   A+  L    +I  G +   
Sbjct: 232 SGDTNGDAHYD------IISAFQK--------SIRGSDVNAALHYLAR--LIAIGDLNSI 275

Query: 314 PRGRLLMPIAWQHLGIDIP 332
              R L+ IA++ +G+  P
Sbjct: 276 T--RRLLVIAYEDIGLANP 292


>gi|305681055|ref|ZP_07403862.1| recombination factor protein RarA [Corynebacterium matruchotii ATCC
           14266]
 gi|305659260|gb|EFM48760.1| recombination factor protein RarA [Corynebacterium matruchotii ATCC
           14266]
          Length = 451

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 68/332 (20%), Positives = 121/332 (36%), Gaps = 48/332 (14%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           VS      + +RPR+L+E  GQ    +  K      +   +A   V+  GPPG GKTT+A
Sbjct: 24  VSPTAPLAARMRPRSLDEVAGQDHVLAAGKPLRRLIEGSGDA--SVILYGPPGTGKTTIA 81

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEIL 125
            ++++     F   S  + +   ++ A++             VLFIDE+HR S   ++ L
Sbjct: 82  SLISQATARKFVGLSA-LNSGVKEVRAVIDQARRDLIQGMSTVLFIDEVHRFSKTQQDAL 140

Query: 126 YPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
             A+E+  + L+    E PS   V   LSR  ++   +        +  R          
Sbjct: 141 LAAVENRVVLLVAATTENPSFSVVAPLLSRSLIVKLESLDDASVRAVLRR---------- 190

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
                  + +RG     +  +D A  ++   S G  R +   L    +        ++  
Sbjct: 191 -----ALVDERGLGG-RITASDAAIDQLVALSGGDARRSLTYLEAAAESVPDGGELSVDV 244

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
             A+     +  D+ G    D+   +   ++  G  V                 D    Y
Sbjct: 245 VAANIDRAVVRYDQDGDQHYDVA--SAFIKSIRGSDV-----------------DAAVHY 285

Query: 304 MIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           + +       PR   R L+  A + +G+  P 
Sbjct: 286 LARMLVAGEDPRFVARRLVIAAAEDVGLADPQ 317


>gi|238485976|ref|XP_002374226.1| AAA family ATPase, putative [Aspergillus flavus NRRL3357]
 gi|220699105|gb|EED55444.1| AAA family ATPase, putative [Aspergillus flavus NRRL3357]
          Length = 527

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 69/328 (21%), Positives = 115/328 (35%), Gaps = 55/328 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEAC--SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
                +RPRTL++  GQ        L+  IE      + +  ++  G PG GKTT+A+V+
Sbjct: 115 PLAERMRPRTLDDVCGQDLVGPHGVLRGLIE-----HDRVPSMILWGGPGTGKTTIARVI 169

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYP 127
           A  +G  F   +    +   +   + ++ +        + ++F DEIHR S   +++   
Sbjct: 170 ASMVGSRFVEINS-TSSGVAECKKIFSDAKSELNLTGRKTIIFCDEIHRFSKSQQDVFLG 228

Query: 128 AMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
            +E  Q+ L+    E PS +     LSR                + DR  + +    Y  
Sbjct: 229 PVESGQVTLIGATTENPSFKVQNALLSRCRTFTLAKLTDEDVKSILDR-ALQVEGPNYSP 287

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
             L              V DE    +A  S G  R +  LL    D +          E+
Sbjct: 288 SAL--------------VDDELINYLAKFSDGDARTSLNLLELAMDLS--KRPGITKEEL 331

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
             +    L  D+ G    D                   TISA     R +  D    Y+ 
Sbjct: 332 KRSLTKTLVYDRAGDQHYD-------------------TISAFHKSLRGSDPDAALYYLA 372

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDI 331
           +       P    R L+ +A + +G+  
Sbjct: 373 RMIQSGEDPLYIARRLIVVASEDIGLAD 400


>gi|321312280|ref|YP_004204567.1| recombination factor protein RarA [Bacillus subtilis BSn5]
 gi|320018554|gb|ADV93540.1| recombination factor protein RarA [Bacillus subtilis BSn5]
          Length = 421

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 67/324 (20%), Positives = 122/324 (37%), Gaps = 41/324 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP  +E+  GQ    +  K+     +A+   L  ++  GPPG+GKT++A  +A 
Sbjct: 3   PLAYRMRPTKIEDIIGQQHLVAEDKIIGRMVQAKH--LSSMILYGPPGIGKTSIATAIAG 60

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
              + FR  +  +  K   ++ A    +  + +L +DE+HRL    ++ L P +E+  + 
Sbjct: 61  STSIAFRKLNAVINNKKDMEIVAQEAKMSGQVILILDEVHRLDKGKQDFLLPYLENGMII 120

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           L+      P         SR  +         L     +R                    
Sbjct: 121 LIGATTANPYHAINPAIRSRTQIFELEPLTPDLIKQALER--------------ALHDEH 166

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT--ITREIADAALL 251
           RG     +++ D+A    A    G  R A   L       + +      IT E A+  L 
Sbjct: 167 RGLGTYSVSIDDQAMEHFAHGCGGDVRSALNALELAVLSTKESADGEIHITLETAEECLQ 226

Query: 252 R--LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           +   + DK G    D+  L+   ++  G            S+   A+  L    +I+ G 
Sbjct: 227 KKSFSHDKDGDAHYDV--LSAFQKSIRG------------SDANAALHYLAR--LIEAGD 270

Query: 310 IQRTPRGRLLMPIAWQHLGIDIPH 333
           ++     R L+ IA++ +G+  P 
Sbjct: 271 LESI--ARRLLVIAYEDIGLASPQ 292


>gi|296333157|ref|ZP_06875610.1| recombination factor protein RarA [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305675337|ref|YP_003867009.1| putative helicase associated protein (ATPase, AAA family) [Bacillus
           subtilis subsp. spizizenii str. W23]
 gi|296149355|gb|EFG90251.1| recombination factor protein RarA [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305413581|gb|ADM38700.1| putative helicase associated protein (ATPase, AAA family) [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 421

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 67/324 (20%), Positives = 122/324 (37%), Gaps = 41/324 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP  +E+  GQ    +  K+     +A+   L  ++  GPPG+GKT++A  +A 
Sbjct: 3   PLAYRMRPTKIEDIIGQQHLVAEDKIIGRMVQAKH--LSSMILYGPPGIGKTSIATAIAG 60

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
              + FR  +  +  K   ++ A    +  + +L +DE+HRL    ++ L P +E+  + 
Sbjct: 61  STSIAFRKLNAVINNKKDMEIVAQEAKMSGQVILILDEVHRLDKGKQDFLLPYLENGMII 120

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           L+      P         SR  +         L     +R                    
Sbjct: 121 LIGATTANPYHAINPAIRSRTQIFELEPLTPELIKQALER--------------AIHDEH 166

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT--ITREIADAALL 251
           RG     +++ D+A    A    G  R A   L       + +      IT E A+  L 
Sbjct: 167 RGLGTYSVSIDDQAMEHFAHGCGGDVRSALNALELAVLSTKESADGVIHITLETAEECLQ 226

Query: 252 R--LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           +   + DK G    D+  L+   ++  G            S+   A+  L    +I+ G 
Sbjct: 227 KKSFSHDKDGDAHYDV--LSAFQKSIRG------------SDANAALHYLAR--LIEAGD 270

Query: 310 IQRTPRGRLLMPIAWQHLGIDIPH 333
           ++     R L+ IA++ +G+  P 
Sbjct: 271 LESI--ARRLLVIAYEDIGLASPQ 292


>gi|78188604|ref|YP_378942.1| recombination factor protein RarA [Chlorobium chlorochromatii CaD3]
 gi|78170803|gb|ABB27899.1| Recombination protein MgsA [Chlorobium chlorochromatii CaD3]
          Length = 453

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 79/335 (23%), Positives = 124/335 (37%), Gaps = 64/335 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACS---NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
                +RPR L+E  GQ         L+ F+E+ +     +  V+F G PG GKTTLA++
Sbjct: 32  PLAERVRPRMLDEVAGQQHLVGANAPLRRFLESGQ-----MPSVIFWGAPGCGKTTLAEI 86

Query: 74  VARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
            A  L  +F   S        + KA D+A  +     R +LFIDEIHR +   ++ L  A
Sbjct: 87  CASTLQCHFEQLSAVDAGVKEVRKALDIATRVRQAGQRCLLFIDEIHRFNKSQQDTLLHA 146

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           +E   + L+    E PS       LSR  +            PL               E
Sbjct: 147 LEQGLILLIGATTENPSFEVNGALLSRMQVYTL--------KPL-------------TAE 185

Query: 187 DLKTIVQRGA---KLTGLAVTDEAACEI-AMRSRGTPRIAGRLLRRVRDFAEVAHAKTI- 241
           +L+ +++R      L      + A  E+      G  R A   +           +    
Sbjct: 186 ELEQVIRRALATDALFRERSIELADLEVLWHYCAGDARKALNAIEAAFALFPTNQSSVQL 245

Query: 242 TREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           TRE  +AAL + A   DK G +  D+                   ISA +   R +  D 
Sbjct: 246 TREHFEAALQQKAPLYDKSGENHYDV-------------------ISAFIKSMRGSDPDA 286

Query: 300 IEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
              ++ +        +   R ++  A + +G   P
Sbjct: 287 ALFWLARMIEGGEDAKFIARRMVIFASEDVGNADP 321


>gi|51244885|ref|YP_064769.1| recombination factor protein RarA [Desulfotalea psychrophila LSv54]
 gi|50875922|emb|CAG35762.1| probable uncharacterized ATPase related to the helicase subunit of
           the Holliday junction resolvase [Desulfotalea
           psychrophila LSv54]
          Length = 440

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 74/347 (21%), Positives = 123/347 (35%), Gaps = 57/347 (16%)

Query: 1   MMDREGLLSR-NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M  +  L+     S +       RP+ LEE  GQ +      +     +   +     + 
Sbjct: 1   MSKQFSLVDSIPASTKAPLAERARPQKLEEIHGQNKLLEKGSILRSMIEQ--DDYSSFIL 58

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFID 112
            GPPG GKTT+A+ +       F S S  V+ K  ++ AL+            + ++F+D
Sbjct: 59  WGPPGTGKTTIARFIETHTKHIFASLSA-VLTKIAEVKALMEQARFRLQAEGQKTLVFVD 117

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           EIHR +   ++   P +E   + L+    E PS   +   LSR  +              
Sbjct: 118 EIHRFNKSQQDAFLPYVESGAIVLLGATTENPSFEVISALLSRCHVFTL----------- 166

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKL--TGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
                         IED+K+I+ R  K     + ++D+A   +A +S G  R A   L  
Sbjct: 167 ----------QPLSIEDIKSIMTRALKEIPREIHISDQALTMLAEKSGGDGRKALNHLET 216

Query: 229 VRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAG 288
           V        +  I + I   +   L  DK G +                       ISA 
Sbjct: 217 VARSGATGDSIDIEKAIQAISQRSLFYDKRGEEH-------------------FNLISAL 257

Query: 289 LSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
               R +       ++ +       P    R L+ IA + +G+  P 
Sbjct: 258 QKSIRGSDPQAAIYWLARMLESGEDPMYITRRLVRIATEDVGLADPQ 304


>gi|16079807|ref|NP_390631.1| recombination factor protein RarA [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221310690|ref|ZP_03592537.1| recombination factor protein RarA [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221315014|ref|ZP_03596819.1| recombination factor protein RarA [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221319935|ref|ZP_03601229.1| recombination factor protein RarA [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221324216|ref|ZP_03605510.1| recombination factor protein RarA [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|81555984|sp|O34528|YRVN_BACSU RecName: Full=Uncharacterized AAA domain-containing protein YrvN
 gi|2635199|emb|CAB14695.1| putative helicase associated protein (ATPase, AAA family) [Bacillus
           subtilis subsp. subtilis str. 168]
          Length = 421

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 67/324 (20%), Positives = 122/324 (37%), Gaps = 41/324 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP  +E+  GQ    +  K+     +A+   L  ++  GPPG+GKT++A  +A 
Sbjct: 3   PLAYRMRPTKIEDIIGQQHLVAEDKIIGRMVQAKH--LSSMILYGPPGIGKTSIATAIAG 60

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
              + FR  +  +  K   ++ A    +  + +L +DE+HRL    ++ L P +E+  + 
Sbjct: 61  STSIAFRKLNAVINNKKDMEIVAQEAKMSGQVILILDEVHRLDKGKQDFLLPYLENGMII 120

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           L+      P         SR  +         L     +R                    
Sbjct: 121 LIGATTANPYHAINPAIRSRTQIFELEPLTPELIKQALER--------------ALHDEH 166

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT--ITREIADAALL 251
           RG     +++ D+A    A    G  R A   L       + +      IT E A+  L 
Sbjct: 167 RGLGTYSVSIDDQAMEHFAHGCGGDVRSALNALELAVLSTKESADGEIHITLETAEECLQ 226

Query: 252 R--LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           +   + DK G    D+  L+   ++  G            S+   A+  L    +I+ G 
Sbjct: 227 KKSFSHDKDGDAHYDV--LSAFQKSIRG------------SDANAALHYLAR--LIEAGD 270

Query: 310 IQRTPRGRLLMPIAWQHLGIDIPH 333
           ++     R L+ IA++ +G+  P 
Sbjct: 271 LESI--ARRLLVIAYEDIGLASPQ 292


>gi|325123959|gb|ADY83482.1| putative ATPase [Acinetobacter calcoaceticus PHEA-2]
          Length = 421

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 77/328 (23%), Positives = 119/328 (36%), Gaps = 59/328 (17%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
             LRPR L E  GQ           +        L  ++F GPPG+GKTT+A ++A+ + 
Sbjct: 10  ERLRPRDLSEIIGQDHLLGEHAPLRQMIDQGH--LPSIIFWGPPGVGKTTIALLLAQAID 67

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
             F S S  +     +L  ++    D    V+FIDEIHR +   ++ L  A+E  ++ L+
Sbjct: 68  RPFVSLSA-LNTGVKELREVIAESGDLLTPVVFIDEIHRFNKSQQDALLGAVEKGKITLI 126

Query: 138 --VGEGPSARSVKINLSRFTLIAATTRVGL-----LTNPLQ-DRFGIPIRLNFYEIEDLK 189
               E PS       LSR  +    +         L N LQ DRF   ++  +  IE+  
Sbjct: 127 GATTENPSFEVNSALLSRCQVYTLNSLDSEAIQTLLNNALQSDRF---LKERYIHIEEYD 183

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            ++Q  A                       R A  LL  +    E     TIT  +    
Sbjct: 184 ALIQFAAG--------------------DARKALNLLDLIASTFEPEVENTITNAVVVKV 223

Query: 250 LLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
             +     DK G    DL                   +SA +   R +  D    +M + 
Sbjct: 224 AQQNIARYDKSGEQHYDL-------------------VSAFIKSIRGSDPDATLYWMARM 264

Query: 308 GFIQRTP--RGRLLMPIAWQHLGIDIPH 333
                 P    R ++  A + +G   P+
Sbjct: 265 LKGGEDPIFIARRMLIAASEDIGNSNPN 292


>gi|169634881|ref|YP_001708617.1| recombination factor protein RarA [Acinetobacter baumannii SDF]
 gi|239502781|ref|ZP_04662091.1| recombination factor protein RarA [Acinetobacter baumannii AB900]
 gi|260557813|ref|ZP_05830026.1| recombination factor protein RarA [Acinetobacter baumannii ATCC
           19606]
 gi|169153673|emb|CAP02871.1| putative ATPase [Acinetobacter baumannii]
 gi|260408604|gb|EEX01909.1| recombination factor protein RarA [Acinetobacter baumannii ATCC
           19606]
          Length = 421

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 71/325 (21%), Positives = 114/325 (35%), Gaps = 53/325 (16%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
             LRPR L E  GQ           +        L  ++F GPPG+GKTT+A ++A+ + 
Sbjct: 10  ERLRPRDLSEIIGQDHLLGEHAPLRQMIDQGH--LPSIIFWGPPGVGKTTIALLLAQAID 67

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
             F S S  +     +L  ++    D    V+FIDEIHR +   ++ L  A+E  ++ L+
Sbjct: 68  RPFVSLSA-LNTGVKELREVIAESGDLLTPVVFIDEIHRFNKSQQDALLGAVEKGKITLI 126

Query: 138 --VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR---FGIPIRLNFYEIEDLKTIV 192
               E PS       LSR  +    +        L +        ++  +  IE+   ++
Sbjct: 127 GATTENPSFEVNSALLSRCQVYTLNSLDSEAIQTLLNNALQNDKFLKERYIHIEEYDALL 186

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           Q  A                       R A  LL  +    E     TIT  +      +
Sbjct: 187 QFAAG--------------------DARKALNLLDLIASTFEPEVENTITNAVVVKVAQQ 226

Query: 253 L--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
                DK G    DL                   +SA +   R +  D    +M +    
Sbjct: 227 NIARYDKSGEQHYDL-------------------VSAFIKSIRGSDPDAALYWMARMLKG 267

Query: 311 QRTPR--GRLLMPIAWQHLGIDIPH 333
              P    R ++  A + +G   P+
Sbjct: 268 GEDPVFIARRMLIAASEDIGNSNPN 292


>gi|119500324|ref|XP_001266919.1| AAA family ATPase, putative [Neosartorya fischeri NRRL 181]
 gi|119415084|gb|EAW25022.1| AAA family ATPase, putative [Neosartorya fischeri NRRL 181]
          Length = 539

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 69/329 (20%), Positives = 114/329 (34%), Gaps = 57/329 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEAC--SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
                +RPRTL+E  GQ        L+  IE      + +  ++  G  G GKTT+A+V+
Sbjct: 121 PLAERMRPRTLDEVCGQELVGPNGVLRGLIE-----QDRVPSMILWGHAGTGKTTIARVI 175

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYP 127
           A  +G  F   +        +   +             + ++F DEIHR S   +++   
Sbjct: 176 ASMVGSRFVEINS-TSTGVAECKKIFAEARSELGLTGRKTIVFCDEIHRFSKSQQDVFLG 234

Query: 128 AMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
            +E  Q+ L+    E PS +     LSR      +         + DR  + +    Y  
Sbjct: 235 PVESGQITLIGATTENPSFKVQNALLSRCRTFTLSKLSDEDVRSILDR-ALRVEGPNYSP 293

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
             +              V DE    +A  S G  R +  LL    D +       +T+E 
Sbjct: 294 SSI--------------VDDELIEYLARFSDGDARTSLNLLELAMDLS---KRPRMTKEE 336

Query: 246 ADAALLRL-AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
              +L +    D+ G    D                   TISA     R +  D    Y+
Sbjct: 337 LKRSLTKTLVYDRAGDQHYD-------------------TISAFHKSIRGSDPDAALYYL 377

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
            +       P    R L+ +A + +G+  
Sbjct: 378 ARMLQSGEDPLYIARRLVVVASEDIGLAD 406


>gi|109069425|ref|XP_001090684.1| PREDICTED: ATPase WRNIP1 isoform 3 [Macaca mulatta]
          Length = 665

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 65/344 (18%), Positives = 123/344 (35%), Gaps = 31/344 (9%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           R + Q       +RP TL+++ GQ  A     +     +     +  ++  GPPG GKTT
Sbjct: 219 RQMLQGKPLADTMRPDTLQDYFGQSRAVGQDTLLRSLLETNE--IPSLILWGPPGCGKTT 276

Query: 70  LAQVVARELGVNFRST--SGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSII 120
           LA ++A     +           AK  D+  ++   +        + +LFIDEIHR +  
Sbjct: 277 LAHIIANNSKKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKS 336

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++   P +E   + L+    E PS +     LSR  +I            +  R    +
Sbjct: 337 QQDTFLPHVECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAINSL 396

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLA---VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
            ++  +       +   +  +      + D+A   +A  S G  R     L+     A +
Sbjct: 397 GIHVLDSSRPTDPLSHSSNSSSEPAMFIEDKAVDTLAYLSDGDARAGLNGLQLAV-LARL 455

Query: 236 AHAKTITRE-----IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
           +  K   ++          L+     K G  +  + Y      ++         ISA   
Sbjct: 456 SSRKMFCKKSGQSYSPSRVLITENDVKEGLQRSHILYDRAGEEHYNC-------ISALHK 508

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
             R + ++    ++ +       P    R L+  A + +G+  P
Sbjct: 509 SMRGSDQNASLYWLARMLEGGEDPLYVARRLVRFASEDIGLADP 552


>gi|46447333|ref|YP_008698.1| recombination factor protein RarA [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46400974|emb|CAF24423.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 422

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 61/327 (18%), Positives = 111/327 (33%), Gaps = 54/327 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP+ L +  GQ        +  +  +++      V+  GPPG GKT++A++ A+
Sbjct: 7   PLAEQLRPKNLNDIVGQDHILGENGLITKTIESQ--IPLSVILWGPPGCGKTSIARLYAQ 64

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAME 130
              + F S S  + +   DL   +   +         +LF+DEIHR +   ++   P +E
Sbjct: 65  AFNMQFISMSA-IFSGVADLKKTIKEAQNQPLFHKGTLLFVDEIHRFNKSQQDAFLPFVE 123

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +  + L+    E PS       LSR  ++      G     L +R+           E  
Sbjct: 124 NGTIILIGATTENPSFYLNGALLSRLRVLPIYPLDGFSLEQLLERYEKQFAPLPLTAE-- 181

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
                             A   +   ++G  R    L+  +R  ++      +  +I   
Sbjct: 182 ------------------ARHWLITCAQGDGRYLYNLIENLRYASKQILDIPLLEKIFQK 223

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
                  DK G    +L                   ISA     R +  +    +  +  
Sbjct: 224 --RSPLFDKRGDQHYNL-------------------ISALHKSVRGSDPNAAIYWFTRML 262

Query: 309 FIQRTP--RGRLLMPIAWQHLGIDIPH 333
                P    R L+ +A + +G+  P 
Sbjct: 263 EGGEEPLFLARRLIRMAVEDIGLSDPQ 289


>gi|213418910|ref|ZP_03351976.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 235

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 57/233 (24%), Positives = 86/233 (36%), Gaps = 23/233 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP  L ++ GQ    +  K    A +A    L  ++  GPPG GKTTLA+V+AR
Sbjct: 15  PLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIAR 72

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
               +    S        I +A + A    N   R +LF+DE+HR +   ++   P +ED
Sbjct: 73  YASADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED 132

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             +  +    E PS       LSR  +    +        + D                 
Sbjct: 133 GTITFIGATTENPSFELNSALLSRARVYLLKSLTTDDIEQVLD--------------QAM 178

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
               RG     + + DE    IA    G  R A   L  + D AE   +    
Sbjct: 179 QDKTRGYGDQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEADDSGKRV 231


>gi|294792127|ref|ZP_06757275.1| ATPase, AAA family [Veillonella sp. 6_1_27]
 gi|294457357|gb|EFG25719.1| ATPase, AAA family [Veillonella sp. 6_1_27]
          Length = 433

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 78/343 (22%), Positives = 128/343 (37%), Gaps = 50/343 (14%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD    ++   + E   +  +RP  L+   GQ +A           +   + +  +LF G
Sbjct: 1   MDSLFDMTPTNTYEPLPV-RMRPTKLDHLYGQEKAVGKGTFLRAMVEK--DTIPSMLFYG 57

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRDVLFIDEIH 115
           P G GKTTLA ++A+     F + +   +          D    + +L+ R +LF+DEIH
Sbjct: 58  PCGTGKTTLAGIIAKVSNSYFVNLNATNVGIGELRTIIEDARKRVRSLQQRTILFLDEIH 117

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   +++L P +ED  + L+    E P     +  LSR  LI                
Sbjct: 118 RFNKSQQDVLLPCVEDGTIILIGATTENPFFEVNRPLLSRLRLITLEALTPKA------- 170

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
            G  +R    + E        G     L VTDE   ++ +   G  R+A  +L +    A
Sbjct: 171 IGQILRRAITDEEV-------GLGKRYLQVTDEVLEDVGIFVNGDGRMALNILEQAA--A 221

Query: 234 EVAHAKTITREIADAALLR--LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
            V     IT E+ +  + R     DK G    D                   TISA +  
Sbjct: 222 MVPDEGMITIEVLEKVVGRRIYTYDKKGDSHYD-------------------TISAFIKS 262

Query: 292 PRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
            R +       Y+ +       P    R ++  A + +G+  P
Sbjct: 263 MRGSDVQATVHYLARMIEAGEDPNFIARRIVICAAEDVGLADP 305


>gi|259649523|dbj|BAI41685.1| recombination factor protein RarA [Lactobacillus rhamnosus GG]
          Length = 461

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 68/319 (21%), Positives = 110/319 (34%), Gaps = 41/319 (12%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            +RP+ L+E  GQ E     ++      A    L  ++  GPPG GKT++A  +A     
Sbjct: 38  RMRPQNLDEVVGQQELVGPGRIIRRMVSAH--RLSSMILYGPPGTGKTSIASAIAGSTKY 95

Query: 81  NFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137
            FR  +     K    + A    +    +L +DEIHRL    ++ L P +E  ++ L+  
Sbjct: 96  AFRILNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPLLESGRIVLIGA 155

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
             E P         SR  +           +   DR                   +RG  
Sbjct: 156 TTENPYMNIQPAIRSRTQIFQVKPLTPTDISTAIDR--------------ALADDKRGLG 201

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE--IADAALLR--L 253
              + +T EA   +   + G  R A   L             TI  +      +L +  +
Sbjct: 202 KYQVDLTPEARDYLTHTTNGDLRAALNGLELAVLSTPAKSDGTIIIDLTTIQQSLQKPAI 261

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
           + D  G    D      I   F          S   S+   A+  L    +I  G +   
Sbjct: 262 SGDTNGDAHYD------IISAFQK--------SIRGSDVNAALHYLAR--LIAIGDLNSI 305

Query: 314 PRGRLLMPIAWQHLGIDIP 332
              R L+ IA++ +G+  P
Sbjct: 306 T--RRLLVIAYEDIGLANP 322


>gi|306823257|ref|ZP_07456633.1| replication-associated recombination protein A [Bifidobacterium
           dentium ATCC 27679]
 gi|309801882|ref|ZP_07695997.1| recombination factor protein RarA [Bifidobacterium dentium
           JCVIHMP022]
 gi|304553889|gb|EFM41800.1| replication-associated recombination protein A [Bifidobacterium
           dentium ATCC 27679]
 gi|308221438|gb|EFO77735.1| recombination factor protein RarA [Bifidobacterium dentium
           JCVIHMP022]
          Length = 458

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 78/358 (21%), Positives = 127/358 (35%), Gaps = 62/358 (17%)

Query: 2   MDREGLLSRNVSQE--DADISLLRPRTLEEFTGQVEACSNLKVFIE----AAKARAEALD 55
           M  +   +    +E        +RP T++E  GQ                A++    A  
Sbjct: 1   MTEDLFGAMEAPEEMTRPLAVRMRPSTVDEVVGQGRVLGEGSPLRRLANPASRKSLTAPS 60

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DV 108
            ++  GPPG+GKTTLA +VA++ G  F   S  V +   D+  +L    DR        V
Sbjct: 61  SIILFGPPGVGKTTLAYIVAKQSGRVFEELSA-VTSGVKDVRDVLKRAHDRLVAEGRETV 119

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLL 166
           LFIDE+HR S   ++ L P++E+  +  +    E PS   +K  LSR  ++   +     
Sbjct: 120 LFIDEVHRFSKSQQDALLPSVENRDVTFIAATTENPSFSVIKPLLSRSVVVKLESLEPDD 179

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
              L +R                   +RG     + + D+A  EI   + G  R    +L
Sbjct: 180 LRTLINRAVED---------------ERGLN-NEVRIRDDAVDEIIRMASGDARKTLTIL 223

Query: 227 RRVRDFAEVAHAKTITREIADAA---------LLRLAIDKMGFDQLDLRYLTMIARNFGG 277
                       +    +              +  +  DK G D  D+            
Sbjct: 224 EAAAGALTGDKERKKGAKRPVITPDVVSKVMDVATVRYDKDGDDHYDV------------ 271

Query: 278 GPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                  ISA +   R +  D    Y+ +       PR   R +M  A + +G+  P 
Sbjct: 272 -------ISAFIKSMRGSDPDATMHYLARMLRAGEDPRFIARRIMIAASEEVGMAAPQ 322


>gi|55821924|ref|YP_140366.1| recombination factor protein RarA [Streptococcus thermophilus LMG
           18311]
 gi|55823843|ref|YP_142284.1| recombination factor protein RarA [Streptococcus thermophilus
           CNRZ1066]
 gi|116628622|ref|YP_821241.1| recombination factor protein RarA [Streptococcus thermophilus
           LMD-9]
 gi|55737909|gb|AAV61551.1| chromosome segregation helicase [Streptococcus thermophilus LMG
           18311]
 gi|55739828|gb|AAV63469.1| chromosome segregation helicase [Streptococcus thermophilus
           CNRZ1066]
 gi|116101899|gb|ABJ67045.1| Recombination protein MgsA [Streptococcus thermophilus LMD-9]
 gi|312279275|gb|ADQ63932.1| ATPase AAA family recombination factor RarA [Streptococcus
           thermophilus ND03]
          Length = 422

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 73/326 (22%), Positives = 122/326 (37%), Gaps = 42/326 (12%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            D     +RPR++ E  GQ       K+     +A    L  ++  GPPG+GKT++A  +
Sbjct: 2   PDNLALRMRPRSISEVIGQKHLVGEGKIIRRMVEA--NMLSSMILYGPPGIGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           A      FR+ +  V +K      A         VL +DEIHRL    ++ L P +E+  
Sbjct: 60  AGTTKFAFRTFNATVDSKKRLQEIAEEAKFSGGLVLLLDEIHRLDKAKQDFLLPLLENGN 119

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + ++    E P         SR  +            PL +       LN    +     
Sbjct: 120 IIMIGATTENPFFSVTPAIRSRVQIFEL--------EPLSNEDIKEAILNVLGDK----- 166

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF--AEVAHAKTITREIADAA 249
            +RG     + + D+A   IA  + G  R A   L        A       IT +I + +
Sbjct: 167 -ERGFA-FEVHLDDDALDFIATATNGDLRSAYNSLDLAVMSTPASGNGQHHITLDIVENS 224

Query: 250 LLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           L R    +DK G    D+  L+ + ++  G  V              ++       +++ 
Sbjct: 225 LQRSYITMDKDGDGHYDV--LSALQKSIRGSDV------------NASLHYAAR--LVEA 268

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
           G +      R L  IA++ +G+  P 
Sbjct: 269 GDLP--SLARRLTVIAYEDIGLANPD 292


>gi|260553887|ref|ZP_05826155.1| recombination factor protein RarA [Acinetobacter sp. RUH2624]
 gi|260405007|gb|EEW98509.1| recombination factor protein RarA [Acinetobacter sp. RUH2624]
          Length = 421

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 71/325 (21%), Positives = 114/325 (35%), Gaps = 53/325 (16%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
             LRPR L E  GQ           +        L  ++F GPPG+GKTT+A ++A+ + 
Sbjct: 10  ERLRPRDLSEIIGQDHLLGEHAPLRQMIDQGH--LPSIIFWGPPGVGKTTIALLLAQAID 67

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
             F S S  +     +L  ++    D    V+FIDEIHR +   ++ L  A+E  ++ L+
Sbjct: 68  RPFVSLSA-LNTGVKELREVIAESGDLLTPVVFIDEIHRFNKSQQDALLGAVEKGKITLI 126

Query: 138 --VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR---FGIPIRLNFYEIEDLKTIV 192
               E PS       LSR  +    +        L +        ++  +  IE+   ++
Sbjct: 127 GATTENPSFEVNSALLSRCQVYTLNSLDSEAIQTLLNNALQNDKFLKERYIHIEEYDALL 186

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           Q  A                       R A  LL  +    E     TIT  +      +
Sbjct: 187 QFAAG--------------------DARKALNLLDLIASTFEPEVENTITNAVVVKVAQQ 226

Query: 253 L--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
                DK G    DL                   +SA +   R +  D    +M +    
Sbjct: 227 NIARYDKSGEQHYDL-------------------VSAFIKSIRGSDPDAALYWMARMLKG 267

Query: 311 QRTPR--GRLLMPIAWQHLGIDIPH 333
              P    R ++  A + +G   P+
Sbjct: 268 GEDPVFIARRMLIAASEDIGNSNPN 292


>gi|121707934|ref|XP_001271981.1| AAA family ATPase, putative [Aspergillus clavatus NRRL 1]
 gi|119400129|gb|EAW10555.1| AAA family ATPase, putative [Aspergillus clavatus NRRL 1]
          Length = 539

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 65/328 (19%), Positives = 119/328 (36%), Gaps = 55/328 (16%)

Query: 17  ADISLLRPRTLEEFTGQV--EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
                +RP+TL+E  GQ        L+  IE      + +  ++  G  G GKTT+A+V+
Sbjct: 121 PLAERMRPQTLDEVCGQELVGPKGVLRGLIE-----QDRVPSMILWGHAGTGKTTIARVI 175

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYP 127
           A  +G  F   +    +   +   +             + ++F DEIHR S   +++   
Sbjct: 176 ASMVGSRFVEINS-TSSGVAECKKIFAEARSELNLTGRKTIIFCDEIHRFSKSQQDVFLG 234

Query: 128 AMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
            +E  Q+ L+    E PS +     LSR              + L DR            
Sbjct: 235 PVESGQVTLIGATTENPSFKVQNALLSRCRTFTL--------SKLTDR------------ 274

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
            D+++I+ R  ++ G   +  A             +   L+  +  FA+       +  +
Sbjct: 275 -DVESILHRALRVEGPNYSPSAL------------VDDELISYLARFAD--GDARTSLNL 319

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
            + A+      +M  D+L       +      G    +TISA     R +  D    Y+ 
Sbjct: 320 LELAMDLSKRSEMTKDELKRSLTKTLV-YDRAGDQHYDTISAFHKSIRGSDPDAALYYLA 378

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDI 331
           +       P    R L+ +A + +G+  
Sbjct: 379 RMLQSGEDPLFIARRLVVVASEDIGLAD 406


>gi|21220007|ref|NP_625786.1| recombination factor protein RarA [Streptomyces coelicolor A3(2)]
 gi|256788895|ref|ZP_05527326.1| recombination factor protein RarA [Streptomyces lividans TK24]
 gi|289772781|ref|ZP_06532159.1| recombination factor protein RarA [Streptomyces lividans TK24]
 gi|8249965|emb|CAB93386.1| conserved ATP/GTP binding protein [Streptomyces coelicolor A3(2)]
 gi|289702980|gb|EFD70409.1| recombination factor protein RarA [Streptomyces lividans TK24]
          Length = 451

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 74/352 (21%), Positives = 120/352 (34%), Gaps = 54/352 (15%)

Query: 2   MDREGLLSRNVSQEDAD------ISLLRPRTLEEFTGQVEAC---SNLKVFIEAAKARAE 52
           M+ +   +    +++ D         +RPRTL+E  GQ       S L+  +    +   
Sbjct: 1   MEPDLFTAAAEERQEKDPTGSPLAVRMRPRTLDEVVGQQHLLKPGSPLRRLVGEGASGPA 60

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------ED 105
               V+  GPPG GKTTLA VV++     F   S  + A   ++ A++            
Sbjct: 61  GPSSVILWGPPGTGKTTLAYVVSKATNKRFVELSA-ITAGVKEVRAVIDGARRAVGGYGK 119

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRV 163
             VLF+DEIHR S   ++ L PA+E+  + L+    E P    +            +  +
Sbjct: 120 ETVLFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYFSVIS--------PLLSRSL 171

Query: 164 GLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAG 223
            L   PL D     +       E       +GA        +         +R       
Sbjct: 172 LLTLEPLTDDDVRDLLRRALTDER----GLKGAVTLPGDTEEHLLRIAGGDARRALTALE 227

Query: 224 RLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIE 283
                  D  E     T   E  D A   +  D+ G    D+   + + ++  G  V   
Sbjct: 228 AAAGAALDKGEAEVGLTTLEETVDRA--AVKYDRDGDQHYDVA--SALIKSIRGSDV--- 280

Query: 284 TISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                         D    Y+ +       PR   R LM  A + +G+  P+
Sbjct: 281 --------------DAALHYLARMVEAGEDPRFIARRLMISASEDIGLADPN 318


>gi|314978649|gb|EFT22743.1| recombination factor protein RarA [Propionibacterium acnes
           HL072PA2]
          Length = 462

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 87/337 (25%), Positives = 131/337 (38%), Gaps = 47/337 (13%)

Query: 9   SRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           S +    DA ++  LRPRT++E  GQ    +        A+        V   GPPG+GK
Sbjct: 22  SLDTPNPDAPLAVRLRPRTIDEIVGQQHLLTPGSPLRRLAEGTGAM--SVFLWGPPGVGK 79

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIV 121
           TT+A VV+      F   S  V A   D+   L     +       VLF+DE+HR S   
Sbjct: 80  TTIASVVSHATNRRFVEISA-VTAGVKDIRRELDTARRQLALGQPTVLFVDEVHRFSKAQ 138

Query: 122 EEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +++L PA+E+  + L+    E PS   +   LSR  L+          + L DR      
Sbjct: 139 QDVLLPAVENRTVTLIAATTENPSFLVISPLLSRSLLLTLKPLTEADVSSLLDR------ 192

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
               +   L+T   R        + D+A  ++   + G  R A   L      A  A   
Sbjct: 193 -ALSDPRGLRTESDR-----RYVLEDDARADLLQLAAGDARRALTYLEEAAAGASAAGTD 246

Query: 240 TITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
           TIT +I   A+ R A   D+ G    D+                   ISA +   R +  
Sbjct: 247 TITSQIVSTAVDRAAVRYDRDGDQHYDV-------------------ISAFIKSVRGSDV 287

Query: 298 DLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           D    Y+ +       PR   R L+ +A + +G+  P
Sbjct: 288 DAALHYLARMIEAGEDPRFIARRLIILASEDIGMAAP 324


>gi|170744408|ref|YP_001773063.1| recombination factor protein RarA [Methylobacterium sp. 4-46]
 gi|168198682|gb|ACA20629.1| AAA ATPase central domain protein [Methylobacterium sp. 4-46]
          Length = 437

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 74/345 (21%), Positives = 112/345 (32%), Gaps = 55/345 (15%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D                  LRP +L E  GQ                R  +L  ++  
Sbjct: 1   MSDLFAAAGLAAGAPRPLADRLRPTSLAEVVGQEHLTGEGGALTR--LLRGGSLGSLILW 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEI 114
           GPPG GKTT+A+++ARE  ++F   S  + +   +L  +              +LF+DEI
Sbjct: 59  GPPGTGKTTVARLLARETALHFEQISA-IFSGVAELRKVFEAARARRAAGQGTLLFVDEI 117

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +    +   P  ED  + L+    E PS       LSR  ++            L D
Sbjct: 118 HRFNRAQLDAFLPVTEDGTVTLVGATTENPSFELNAALLSRARVLVFRALDEAAIGKLLD 177

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R                      A+   L +  EA   +   + G  R A  L   +   
Sbjct: 178 R-------------------AEAAEGRPLPLDPEARAVLLRMADGDGRAALTLAEEIWRS 218

Query: 233 AEVAHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
              A  + +T E   A + R A   DK      +L                   ISA   
Sbjct: 219 T--AGDEVLTPEALQALIQRRAPVYDKAQEGHYNL-------------------ISALHK 257

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
             R +  D    Y+ +            R L+  A + +G+  P 
Sbjct: 258 TIRGSDPDAALYYLCRMLDAGEDRLFIARRLVRAAVEDVGLADPQ 302


>gi|332873377|ref|ZP_08441331.1| recombination factor protein RarA [Acinetobacter baumannii 6014059]
 gi|332738440|gb|EGJ69313.1| recombination factor protein RarA [Acinetobacter baumannii 6014059]
          Length = 421

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 72/325 (22%), Positives = 114/325 (35%), Gaps = 53/325 (16%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
             LRPR L E  GQ           +        L  ++F GPPG+GKTT+A ++A+ + 
Sbjct: 10  ERLRPRDLSEIIGQDHLLGEHAPLRQMIDQGH--LPSIIFWGPPGVGKTTIALLLAQAID 67

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
             F S S  +     +L  ++    D    V+FIDEIHR +   ++ L  A+E  ++ L+
Sbjct: 68  RPFVSLSA-LNTGVKELREVIAESGDLLTPVVFIDEIHRFNKSQQDALLGAVEKGKITLI 126

Query: 138 --VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR---FGIPIRLNFYEIEDLKTIV 192
               E PS       LSR  +    +        L +        ++  +  IE+   ++
Sbjct: 127 GATTENPSFEVNSALLSRCQVYTLNSLDSEAIQTLLNNALQNDKFLKERYIHIEEYDALL 186

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           Q  A                       R A  LL  +    E     TIT  I      +
Sbjct: 187 QFAAG--------------------DARKALNLLDLIASTFEPEVENTITNAIVVKVAQQ 226

Query: 253 L--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
                DK G    DL                   +SA +   R +  D    +M +    
Sbjct: 227 NIARYDKSGEQHYDL-------------------VSAFIKSIRGSDPDAALYWMARMLKG 267

Query: 311 QRTPR--GRLLMPIAWQHLGIDIPH 333
              P    R ++  A + +G   P+
Sbjct: 268 GEDPVFIARRMLIAASEDIGNSNPN 292


>gi|15827173|ref|NP_301436.1| recombination factor protein RarA [Mycobacterium leprae TN]
 gi|221229651|ref|YP_002503067.1| recombination factor protein RarA [Mycobacterium leprae Br4923]
 gi|13092721|emb|CAC30018.1| conserved hypothetical protein [Mycobacterium leprae]
 gi|219932758|emb|CAR70603.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
          Length = 473

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 73/321 (22%), Positives = 119/321 (37%), Gaps = 48/321 (14%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            +RP +L+E  GQ    +         +     +   +  GPPG GKTTLA ++++  G 
Sbjct: 56  RMRPASLDELVGQGHLLAPGSPLRRLVEGSG--VVSAILHGPPGCGKTTLAALISQATGH 113

Query: 81  NFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
            F + S  + A   D+ A+L           R VLFIDE+HR S   ++ L  A+E+  +
Sbjct: 114 RFEALSA-LSAGVKDVRAVLKIARSALLSGKRTVLFIDEVHRFSKTQQDALLSAVENRVV 172

Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            L+    E PS   V   LSR                      + ++L     +D++ +V
Sbjct: 173 LLVAATTENPSFSVVAPLLSR---------------------SLILQLRPLNADDIRAVV 211

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           QR   +                     R+A    RRV    EVA     T +    A + 
Sbjct: 212 QRA--VDDPRGLGGQIAVAPEAVDLLVRLAAGDARRVLTALEVAAEAVQTGDELTVATIE 269

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
            ++D                R    G    + +SA +   R +  D    Y+ +      
Sbjct: 270 QSLDNAA------------VRYDRDGDQHYDIVSAFIKSVRGSDVDAALHYLARMLIAGE 317

Query: 313 TPR--GRLLMPIAWQHLGIDI 331
            PR   R L+ +A + +G+  
Sbjct: 318 DPRFIARRLLILASEDIGLAD 338


>gi|169629937|ref|YP_001703586.1| hypothetical protein MAB_2853c [Mycobacterium abscessus ATCC 19977]
 gi|169241904|emb|CAM62932.1| Conserved hypothetical protein [Mycobacterium abscessus]
          Length = 451

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 81/342 (23%), Positives = 126/342 (36%), Gaps = 62/342 (18%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
              V         +RP TL+E  GQ                   A   V+  GPPG GKT
Sbjct: 19  DPGVPPNAPLAVRMRPATLDEVVGQGHLLKQGSPLRRLVDGSGAA--SVILYGPPGTGKT 76

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTN-------LEDRDVLFIDEIHRLSIIV 121
           TLA +++   G  F + S  + A   ++ A++ N          + VLFIDE+HR S   
Sbjct: 77  TLASLISGATGRRFEALSA-LSAGVKEVRAVIENSRTALAYHGQQTVLFIDEVHRFSKTQ 135

Query: 122 EEILYPAMEDFQLDLM--VGEGPSARSVKINLSR-----FTLIAATTRVGLLTNPLQDRF 174
           ++ L  A+E+  + L+    E PS   V   LSR        +A      +LT  + D  
Sbjct: 136 QDALLAAVENRVVLLVAATTENPSFSVVAPLLSRSLILQLQPLADNDIREVLTRAIADER 195

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
           G+   +   + E L  +VQ  A                       R A   L    + A 
Sbjct: 196 GLGGAVAV-DPEALSLLVQLAAG--------------------DARRALTALEVAFETAG 234

Query: 235 VAHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEP 292
            A +  I+ E+ + ++ R A   D+ G    D+                   +SA +   
Sbjct: 235 GAGS-VISVEVVEQSVDRAAVRYDRDGDQHYDV-------------------VSAFIKSI 274

Query: 293 RDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           R +  D    Y+ +       PR   R LM +A + +G+  P
Sbjct: 275 RGSDVDAALHYLARMLTAGEDPRFVARRLMILASEDVGMADP 316


>gi|168066656|ref|XP_001785250.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162663155|gb|EDQ49936.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 498

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 70/344 (20%), Positives = 121/344 (35%), Gaps = 56/344 (16%)

Query: 16  DADISLLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           +     +RP +++   GQ         L+  I+A      +L  ++F GPPG GKT+L Q
Sbjct: 78  EPLAERMRPASVDLVVGQDHLLGPRCMLRNLIDA-----NSLSSIIFWGPPGTGKTSLVQ 132

Query: 73  VVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127
            +AR +   F + S        + +  + A  L    +R +L +DEIHR +    ++  P
Sbjct: 133 TIARAVSYRFVALSAVSSGLKEVRETLEEAKRLQKFGERTLLLLDEIHRFNKAQLDVFLP 192

Query: 128 AMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
            +E   + L+    E PS       LSR  ++            L DR            
Sbjct: 193 CVEAGHIVLIGATTENPSFEINAALLSRCKVLTLNKLQPDHIRSLLDRAISDK------E 246

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA------------ 233
           + L   +   A    + V  +A   +A  + G  R+A   L      A            
Sbjct: 247 KGLMVSLAGSAAEDVIKVEQDALEFLADAADGDARVALNTLELAGLAAFASWESTPRRPC 306

Query: 234 EVAHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
               A TI  +    A+ R     DK G +  +   ++ + ++  GG             
Sbjct: 307 SADKASTILADANAKAIQRSYFLFDKSGEEHYN--IVSALIKSMRGGD------------ 352

Query: 292 PRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                 D    ++ +       P    R L+  A + +G+  P 
Sbjct: 353 -----PDAAIYWLARMLEGGEGPLYIARRLIRFASEDVGLSDPQ 391


>gi|302533391|ref|ZP_07285733.1| LOW QUALITY PROTEIN: recombination factor protein RarA
           [Streptomyces sp. C]
 gi|302442286|gb|EFL14102.1| LOW QUALITY PROTEIN: recombination factor protein RarA
           [Streptomyces sp. C]
          Length = 340

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 76/328 (23%), Positives = 121/328 (36%), Gaps = 52/328 (15%)

Query: 21  LLRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
            +RPR L+E  GQ       S L+  +            V+  GPPG+GKTTLA VV++ 
Sbjct: 26  RMRPRNLDEVVGQQHLLKPGSPLRRLVGEGAGGPAGASSVILWGPPGIGKTTLAYVVSQA 85

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAME 130
               F   S  + A   ++ A++   +          VLF+DEIHR S   ++ L PA+E
Sbjct: 86  TRKRFVELSA-ITAGVKEVRAVIEGAKRAAGGYGKETVLFLDEIHRFSKAQQDSLLPAVE 144

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +  + L+    E P    +            +  + L   PL D     +       E  
Sbjct: 145 NRWVTLIAATTENPYFSII--------SPLLSRSLLLTLEPLTDEDLRALMRRALTEE-- 194

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
                RG     +++  +A   +   + G  R A   L      A     + IT +  + 
Sbjct: 195 -----RGLGG-AVSLPADAEAHLLRIAGGDARRALTALEAGAGSAIAKGEEEITLQTLEE 248

Query: 249 ALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           A+ R A   DK G    D+   + + ++  G  V                 D    Y+ +
Sbjct: 249 AVDRAAVRYDKDGDQHYDVA--SALIKSIRGSDV-----------------DAALHYLAR 289

Query: 307 QGFIQRTPR--GRLLMPIAWQHLGIDIP 332
                  PR   R LM  A + +G+  P
Sbjct: 290 MIEAGEDPRFIARRLMISASEDIGLADP 317


>gi|310643530|ref|YP_003948288.1| aaa atpase central domain-containing protein [Paenibacillus
           polymyxa SC2]
 gi|309248480|gb|ADO58047.1| AAA ATPase central domain-containing protein [Paenibacillus
           polymyxa SC2]
          Length = 436

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 87/228 (38%), Gaps = 26/228 (11%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD       +          LRP +L+E+ GQ       K+   A +A  + +  +L  G
Sbjct: 1   MDLFSYSQESTPNNRLLADRLRPTSLDEYIGQEHVVGPGKLLRRAIEA--DQVSSILLYG 58

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEI 114
           PPG GKTTLA ++++    +F   +  V A   D+  ++   +        + +LF+DE+
Sbjct: 59  PPGCGKTTLAHIISQHTQGDFVRLNA-VEASVKDVREVIDRAQTNKSMYGKKTILFLDEV 117

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++ L PA+E   +  +    E P        +SR TL          +     
Sbjct: 118 HRFNSSRQDALLPAVEKGTIVFIGATTENPFHYVNGALMSRSTLFQLEALTQEHSLAAMR 177

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPR 220
           R                +   +G     L V + A   IA  + G  R
Sbjct: 178 R--------------ALSDADKGLGYMQLQVDEAALDHIASMANGDIR 211


>gi|254383601|ref|ZP_04998951.1| ATP/GTP binding protein [Streptomyces sp. Mg1]
 gi|194342496|gb|EDX23462.1| ATP/GTP binding protein [Streptomyces sp. Mg1]
          Length = 451

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 76/332 (22%), Positives = 123/332 (37%), Gaps = 52/332 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
              + +RPRTL+E  GQ       S L+  +            V+  GPPG+GKTTLA V
Sbjct: 22  PLAARMRPRTLDEVVGQQHLLKPGSPLRRLVGEGAGGPAGASSVILWGPPGIGKTTLAYV 81

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILY 126
           V++     F   S  + A   ++ A++   +          VLF+DEIHR S   ++ L 
Sbjct: 82  VSQATQKRFVELSA-ITAGVKEVRAVIEGAKRAAGGYGKETVLFLDEIHRFSKAQQDSLL 140

Query: 127 PAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           PA+E+  + L+    E P    +   LSR  L+   +      + L  R           
Sbjct: 141 PAVENRWVTLIAATTENPYFSIISPLLSRSLLLTLESLTDEDLSALMRR----------- 189

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
                   +RG     + +  +A   +   + G  R A   L      A       I+ +
Sbjct: 190 ----ALEEERGLGG-AVTLPADAEAHLLRIAGGDARRALTALEAGAGSAIAKGEAEISLQ 244

Query: 245 IADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             + A+ R A   D+ G    D+   + + ++  G  V                 D    
Sbjct: 245 TLEEAVDRAAVTYDRDGDQHYDVA--SALIKSIRGSDV-----------------DAALH 285

Query: 303 YMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           Y+ +       PR   R LM  A + +G+  P
Sbjct: 286 YLARMIEAGEDPRFIARRLMISASEDIGLADP 317


>gi|170049711|ref|XP_001858122.1| werner helicase interacting protein [Culex quinquefasciatus]
 gi|167871474|gb|EDS34857.1| werner helicase interacting protein [Culex quinquefasciatus]
          Length = 529

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 63/339 (18%), Positives = 127/339 (37%), Gaps = 30/339 (8%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           ++     +      +RP  L ++ GQ +      V     +  + ++  ++F GPPG GK
Sbjct: 121 VAEKEDSQVPLAEKMRPVELTDYIGQEQIIGKNTVLRTLFE--SNSIPSMIFWGPPGCGK 178

Query: 68  TTLAQVVA---RELGVNFRSTSGPVIAKAGDLAALLT------NLEDRDVLFIDEIHRLS 118
           TTLA ++A   ++            ++   D+   +         + + +LF+DEIHR +
Sbjct: 179 TTLAHIIAAHCKKHENMRFVKLSATMSGVNDVKEAVKVAKNELKFKRKTILFMDEIHRFN 238

Query: 119 IIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
            + ++I  P +E   + L+    E PS       LSR  +I            + +R   
Sbjct: 239 KLQQDIFLPHVESGTVTLLGATTENPSFSLNSALLSRCRVIVLEKLAVEPMMKILERALP 298

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
                 +E  +    + +   +  + ++ +    +A    G  RI    L+   +     
Sbjct: 299 QYETVMFENNNQTPDISKLPFIPRMMISSQTIRWLAEVCDGDARIGLNSLQLALNTVAA- 357

Query: 237 HAKTITREIADAALLRLAIDK--MGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRD 294
                 +E   +AL  +++D+   G  +  L Y          G    E ISA     R 
Sbjct: 358 -----RQEQEGSALKLISLDEIQEGIKKSHLLY-------DRKGDQHYELISALHKSVRA 405

Query: 295 AIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
           + ++    +  +       PR   R ++ +A + +GI  
Sbjct: 406 SDDNAALYWCTRMLESGEDPRYLVRRMIRMASEDIGIAD 444


>gi|227875433|ref|ZP_03993574.1| crossover junction endodeoxyribonuclease ATPase [Mobiluncus
           mulieris ATCC 35243]
 gi|306818744|ref|ZP_07452466.1| AAA family ATPase [Mobiluncus mulieris ATCC 35239]
 gi|307701030|ref|ZP_07638055.1| recombination factor protein RarA [Mobiluncus mulieris FB024-16]
 gi|227843987|gb|EEJ54155.1| crossover junction endodeoxyribonuclease ATPase [Mobiluncus
           mulieris ATCC 35243]
 gi|304648430|gb|EFM45733.1| AAA family ATPase [Mobiluncus mulieris ATCC 35239]
 gi|307614025|gb|EFN93269.1| recombination factor protein RarA [Mobiluncus mulieris FB024-16]
          Length = 445

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 74/328 (22%), Positives = 123/328 (37%), Gaps = 57/328 (17%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            +RPR+L+E  GQ    +           + +    V+  GPPG GKTTLA +VA+  G 
Sbjct: 26  RMRPRSLDELVGQEHLLAQNSPLRRLLSGQTDMASSVILFGPPGTGKTTLAFLVAQAGGR 85

Query: 81  NFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMEDFQ 133
            +   S  + A   ++  ++ + + R        +LF+DE+HR S   ++ L  A+E+  
Sbjct: 86  EYVQLSA-ISAGVKEVREVIDSAKRRLNLEGKETILFLDEVHRFSKSQQDSLLSAVENRW 144

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + L+    E P+   +            +  + L   PL             + E + TI
Sbjct: 145 IVLVAATTENPTFSVISP--------LLSRSLLLNLRPL-------------DTEAISTI 183

Query: 192 VQRGA----KLTGLAVTDEAACEIAMR-SRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           V+R       L G     EAA E  +R +    R +  LL      A+   A  IT E  
Sbjct: 184 VERALTDSRGLGGKFQLTEAAREAIVRLAGSDGRKSLTLLEAAAGGADSRGASEITAEDV 243

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
            AA     +     +  D+                    SA +   R +  D    Y+ +
Sbjct: 244 AAAADTAIVRYNIDEHYDVA-------------------SAFIKSMRGSDPDAALHYLAR 284

Query: 307 QGFIQRTPR--GRLLMPIAWQHLGIDIP 332
                  PR   R ++  A + +G+  P
Sbjct: 285 MIRGGEDPRFIARRVVIAAAEDVGLADP 312


>gi|8886769|gb|AAF80563.1|AF218313_1 putative helicase RUVBL [Homo sapiens]
 gi|55661736|emb|CAH73665.1| Werner helicase interacting protein 1 [Homo sapiens]
          Length = 445

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 63/337 (18%), Positives = 121/337 (35%), Gaps = 31/337 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP TL+++ GQ +A     +     +     +  ++  GPPG GKTTLA ++A 
Sbjct: 6   PLADTMRPDTLQDYFGQSKAVGQDTLLRSLLETNE--IPSLILWGPPGCGKTTLAHIIAS 63

Query: 77  ELGVNFRST--SGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYP 127
               +           AK  D+  ++   +        + +LFIDEIHR +   ++   P
Sbjct: 64  NSKKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLP 123

Query: 128 AMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
            +E   + L+    E PS +     LSR  +I            +  R    + ++  + 
Sbjct: 124 HVECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAINSLGIHVLDS 183

Query: 186 EDLKTIVQRGAKLTGLA---VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
                 +   +  +      + D+A   +A  S G  R     L+     A ++  K   
Sbjct: 184 SRPTDPLSHSSNSSSEPAMFIEDKAVDTLAYLSDGDARAGLNGLQLAV-LARLSSRKMFC 242

Query: 243 RE-----IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
           ++          L+     K G  +  + Y      ++         ISA     R + +
Sbjct: 243 KKSGQSYSPSRVLITENDVKEGLQRSHILYDRAGEEHYNC-------ISALHKSMRGSDQ 295

Query: 298 DLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           +    ++ +       P    R L+  A + +G+  P
Sbjct: 296 NASLYWLARMLEGGEDPLYVARRLVRFASEDIGLADP 332


>gi|314927363|gb|EFS91194.1| recombination factor protein RarA [Propionibacterium acnes
           HL044PA1]
 gi|328907448|gb|EGG27214.1| recombination factor protein RarA [Propionibacterium sp. P08]
          Length = 474

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 87/337 (25%), Positives = 130/337 (38%), Gaps = 47/337 (13%)

Query: 9   SRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           S +    DA ++  LRPRT++E  GQ    ++       A+        V   GPPG+GK
Sbjct: 34  SLDTPNPDAPLAVRLRPRTIDEIVGQQHLLTSGSPLRRLAEGTGAM--SVFLWGPPGVGK 91

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIV 121
           TT+A VV+      F   S  V A   D+   L     +       VLF+DE+HR S   
Sbjct: 92  TTIASVVSHATNRRFVEISA-VTAGVKDVRRELDTARRQLALGKPTVLFVDEVHRFSKAQ 150

Query: 122 EEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +++L PA+E+  + L+    E PS   +   LSR  L+          + L DR     R
Sbjct: 151 QDVLLPAVENRTVTLIAATTENPSFSVISPLLSRSLLLTLKPLTDTDISSLIDRALSDPR 210

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
               E + L  +             D+A  ++   + G  R A   L      A  A   
Sbjct: 211 GLRTESDGLYVL------------EDDARADLLQLAGGDARRALTYLEEAAAGASAASTD 258

Query: 240 TITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
           TIT  I   A+ R A   D+ G    D+                   ISA +   R +  
Sbjct: 259 TITSPIVSTAVDRAAVRYDRNGDQHYDV-------------------ISAFIKSVRGSDV 299

Query: 298 DLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           D    Y+ +       PR   R L+ +A + +G+  P
Sbjct: 300 DAALHYLARMIEAGEDPRFIARRLVILASEDIGMAAP 336


>gi|302658374|ref|XP_003020891.1| hypothetical protein TRV_04967 [Trichophyton verrucosum HKI 0517]
 gi|291184761|gb|EFE40273.1| hypothetical protein TRV_04967 [Trichophyton verrucosum HKI 0517]
          Length = 551

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 77/347 (22%), Positives = 126/347 (36%), Gaps = 70/347 (20%)

Query: 6   GLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSN--LKVFIEAAKARAEALDHVLFVGP 62
            + S N  Q+ A +   +RPRTL+E  GQ     N  L+  IE      + +  ++  G 
Sbjct: 129 RVKSSNALQKSAPLAERMRPRTLDEMCGQELVGENGVLRGLIE-----RDRVPSMILWGS 183

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIH 115
            G GKTTLA+V+A  +G  F   +    +   +   L    +        + ++F DEIH
Sbjct: 184 AGTGKTTLARVIASMVGSRFVEINS-TSSGVAECKKLFAEAKNELSLTGRKTIIFCDEIH 242

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R S   +++    +E  Q+ L+    E PS +     LSR                    
Sbjct: 243 RFSKSQQDVFLGPVESGQVTLIGATTENPSFKVQNALLSRCRTFTL-------------- 288

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAV------TDEAACEIAMRSRGTPRIAGRLLR 227
                       E++  I+ R  +L G          DE    +A  + G  R A  LL 
Sbjct: 289 -------AKLTEENICAILNRALRLEGPNYSPSALVDDELIKYLAAFADGDARTALNLLE 341

Query: 228 RVRDFAEVAHAKTITREIADAALLRL-AIDKMGFDQLDLRYLTMIARNFGGGPVGIETIS 286
              D ++    + +T++    +L R    D+ G    D                   TIS
Sbjct: 342 LAMDLSQ---RENMTKDELKKSLTRTLVYDRAGDQHYD-------------------TIS 379

Query: 287 AGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
           A     R +  D    Y+ +       P    R L+ +A + +G+  
Sbjct: 380 AFHKSIRGSDPDASLYYLARMIQSGEDPLYIARRLIVVASEDVGLAD 426


>gi|262202249|ref|YP_003273457.1| ATPase AAA [Gordonia bronchialis DSM 43247]
 gi|262085596|gb|ACY21564.1| AAA ATPase central domain protein [Gordonia bronchialis DSM 43247]
          Length = 460

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 76/336 (22%), Positives = 122/336 (36%), Gaps = 43/336 (12%)

Query: 10  RNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
            + ++ DA ++  +RP++L+E  GQ                   A   VL  GPPG GKT
Sbjct: 20  PHGTRPDAPLAVRMRPQSLDEIVGQQHLLGAGSPLRRLISGSGAA--SVLLYGPPGTGKT 77

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVE 122
           T+A +++R  G  F + S  + A   ++ A++     R       VLFIDE+HR S   +
Sbjct: 78  TMASLISRATGGRFEALSA-LSAGVKEVRAVIDIARRRLVEGQQTVLFIDEVHRFSKTQQ 136

Query: 123 EILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           + L  A+E+  + L+    E PS   V   LSR  ++   +          D     +  
Sbjct: 137 DALLDAVENRIVLLVAATTENPSFSVVAPLLSRSLVLQLRSLSD-------DDILEVLGR 189

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
              +   L   V+         +   +  +           A   LR   D A       
Sbjct: 190 AVADPRGLDGRVEITDAALD-HLVAVSGGDARRALTALEASADAALRESADDAGEPGGSV 248

Query: 241 ITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
           I     +AA+ R A   D+ G    D+                    SA +   R +  D
Sbjct: 249 IDLPDVEAAIDRAAVRYDRDGDQHYDV-------------------TSAFIKSIRGSDVD 289

Query: 299 LIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
               Y+ +       PR   R LM  A + +G+  P
Sbjct: 290 AALHYLARMIAAGEDPRFISRRLMIHASEDIGMADP 325


>gi|114605194|ref|XP_001159632.1| PREDICTED: ATPase WRNIP1 isoform 3 [Pan troglodytes]
          Length = 665

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 65/344 (18%), Positives = 124/344 (36%), Gaps = 31/344 (9%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           R + Q       +RP TL+++ GQ +A     +     +     +  ++  GPPG GKTT
Sbjct: 219 RQMLQGKPLADTMRPDTLQDYFGQSKAVGQDTLLRSLLETNE--IPSLILWGPPGCGKTT 276

Query: 70  LAQVVARELGVNFRST--SGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSII 120
           LA ++A     +           AK  D+  ++   +        + +LFIDEIHR +  
Sbjct: 277 LAHIIASNSKKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKS 336

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++   P +E   + L+    E PS +     LSR  +I            +  R    +
Sbjct: 337 QQDTFLPHVECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAINSL 396

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLA---VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
            ++  +       +   +  +      + D+A   +A  S G  R     L+     A +
Sbjct: 397 GIHVLDSSRPTDPLSHSSNSSSEPAMFIEDKAVDTLAYLSDGDARAGLNGLQLAV-LARL 455

Query: 236 AHAKTITRE-----IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
           +  K   ++          L+     K G  +  + Y      ++         ISA   
Sbjct: 456 SSRKMFCKKSGQSYSPSRVLITENDVKEGLQRSHILYDRAGEEHYNC-------ISALHK 508

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
             R + ++    ++ +       P    R L+  A + +G+  P
Sbjct: 509 SMRGSDQNASLYWLARMLEGGEDPLYVARRLVRFASEDIGLADP 552


>gi|313837756|gb|EFS75470.1| recombination factor protein RarA [Propionibacterium acnes
           HL037PA2]
 gi|314972693|gb|EFT16790.1| recombination factor protein RarA [Propionibacterium acnes
           HL037PA3]
          Length = 461

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 87/337 (25%), Positives = 130/337 (38%), Gaps = 47/337 (13%)

Query: 9   SRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           S +    DA ++  LRPRT++E  GQ    ++       A+        V   GPPG+GK
Sbjct: 21  SLDTPNPDAPLAVRLRPRTIDEIVGQQHLLTSGSPLRRLAEGTGAM--SVFLWGPPGVGK 78

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIV 121
           TT+A VV+      F   S  V A   D+   L     +       VLF+DE+HR S   
Sbjct: 79  TTIASVVSHATNRRFVEISA-VTAGVKDVRRELDTARRQLALGKPTVLFVDEVHRFSKAQ 137

Query: 122 EEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +++L PA+E+  + L+    E PS   +   LSR  L+          + L DR     R
Sbjct: 138 QDVLLPAVENRTVTLIAATTENPSFSVISPLLSRSLLLTLKPLTDTDISSLIDRALSDPR 197

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
               E + L  +             D+A  ++   + G  R A   L      A  A   
Sbjct: 198 GLRTESDGLYVL------------EDDARADLLQLAGGDARRALTYLEEAAAGASAASTD 245

Query: 240 TITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
           TIT  I   A+ R A   D+ G    D+                   ISA +   R +  
Sbjct: 246 TITSPIVSTAVDRAAVRYDRNGDQHYDV-------------------ISAFIKSVRGSDV 286

Query: 298 DLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           D    Y+ +       PR   R L+ +A + +G+  P
Sbjct: 287 DAALHYLARMIEAGEDPRFIARRLVILASEDIGMAAP 323


>gi|297626347|ref|YP_003688110.1| Uncharacterized ATPase related to the helicase subunit of the
           holliday junction resolvase [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296922112|emb|CBL56680.1| Uncharacterized ATPase related to the helicase subunit of the
           holliday junction resolvase [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 474

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 83/324 (25%), Positives = 124/324 (38%), Gaps = 46/324 (14%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            LRPR+L+E  GQ             A+    A   V   GPPG+GKTT+A VV+R    
Sbjct: 39  RLRPRSLDEIVGQQHLLGPGSPLRRLAE--GHAAMSVFLWGPPGVGKTTIAAVVSRATNR 96

Query: 81  NFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQL 134
            F   S  V A   D+   L             VLF+DE+HR S   +++L PA+E+  +
Sbjct: 97  RFVEMSA-VTAGVKDVRRELDIARRELARGRPTVLFVDEVHRFSKAQQDVLLPAVENRIV 155

Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            L+    E PS   +   LSR  L+          + L DR  +         E  +   
Sbjct: 156 TLIAATTENPSFSVISPLLSRSLLLTLKPLTADDISILLDR-ALTDERGLRTPEGRE--- 211

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
                     + D+A  ++   + G  R A   L      A  A + TIT +   +A+ R
Sbjct: 212 --------YTLDDQARADLLRLAGGDARRALTYLEESAAGASAADSATITTDSVASAVDR 263

Query: 253 LA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
            A   D+ G    D+                   ISA +   R +  D    Y+ +    
Sbjct: 264 AAVRYDRDGDQHYDV-------------------ISAFIKSVRGSDVDAALHYLARMITA 304

Query: 311 QRTPR--GRLLMPIAWQHLGIDIP 332
              PR   R L+ +A + +G+  P
Sbjct: 305 GEDPRFIARRLVILASEDIGMAAP 328


>gi|42522441|ref|NP_967821.1| recombination factor protein RarA [Bdellovibrio bacteriovorus
           HD100]
 gi|39574973|emb|CAE78814.1| ATPase, AAA family [Bdellovibrio bacteriovorus HD100]
          Length = 449

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 73/347 (21%), Positives = 126/347 (36%), Gaps = 56/347 (16%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD     S+          +LRP+TL++  GQ +         +    R   L  ++  G
Sbjct: 13  MDLFS-ASQASHGTSPLSEILRPKTLDDIFGQQKTLGPQSKLGQM--LRKGYLPSLIIWG 69

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAAL-------LTNLEDRDVLFIDEI 114
           PPG GKTT A  +++    ++   +  V + A  L  +           + + +LF+DEI
Sbjct: 70  PPGTGKTTFALALSQHFNAHYVHLNA-VDSGAKALREVGEAGKDRRLQYQQKTILFVDEI 128

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   +++L P +E   L L+    E PS    +  LSR                   
Sbjct: 129 HRFNKAQQDVLLPFVEKGDLVLVGATTENPSYELNRALLSRCR----------------- 171

Query: 173 RFGIPIRLNFYEIEDLKTIVQRG----AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
                +       +DL  IV+R     AK     +T++A   +   S G  R     L  
Sbjct: 172 ----VVIFERLSEDDLNKIVKRAETHYAKPLDKILTEDAHKNLLEYSDGDARRLINSLEI 227

Query: 229 VRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAG 288
           +  F +      +        LL+   + +G+D+    +               +TISA 
Sbjct: 228 LYTFTKDEVEGPLLDVNDMRELLQ--QNPLGYDKNSEMH--------------YDTISAF 271

Query: 289 LSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +   R +  D    Y+ +       P    R L+ +A + +G   P 
Sbjct: 272 IKSIRGSDPDAAMYYLARMLDGGEDPVFIARRLIILASEDIGNADPR 318


>gi|315042992|ref|XP_003170872.1| DNA-dependent ATPase MGS1 [Arthroderma gypseum CBS 118893]
 gi|311344661|gb|EFR03864.1| DNA-dependent ATPase MGS1 [Arthroderma gypseum CBS 118893]
          Length = 552

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 72/343 (20%), Positives = 121/343 (35%), Gaps = 69/343 (20%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSN--LKVFIEAAKARAEALDHVLFVGPPGLG 66
           S  + +       +RPRTL+E  GQ     N  L+  IE      + +  ++  G  G G
Sbjct: 134 SNALQKSAPLAERMRPRTLDEVCGQELVGENGVLRGLIE-----RDRVPSMILWGSAGTG 188

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSI 119
           KTT+A+V+A  +G  F   +    +   +   L    +        + ++F DEIHR S 
Sbjct: 189 KTTVARVIASMVGSRFVEINS-TSSGVAECKKLFAEAKNELSLTGRKTIIFCDEIHRFSK 247

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             +++    +E  Q+ L+    E PS +     LSR                        
Sbjct: 248 SQQDVFLGPVESGQVTLIGATTENPSFKVQNALLSRCRTFTL------------------ 289

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAV------TDEAACEIAMRSRGTPRIAGRLLRRVRD 231
                   E++  I+ R  ++ G          DE    +A  + G  R A  LL    D
Sbjct: 290 ---AKLTEENICAILNRALRVEGPNYSPSALVDDELIKYLAAFADGDARTALNLLELAMD 346

Query: 232 FAEVAHAKTITREIADAALLRL-AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
            ++      +T++    +L R    D+ G    D                   TISA   
Sbjct: 347 LSQREG---MTKDELKKSLTRTLVYDRAGDQHYD-------------------TISAFHK 384

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
             R +  D    Y+ +       P    R L+ +A + +G+  
Sbjct: 385 SIRGSDPDASLYYLARMIQSGEDPLYIARRLIVVASEDVGLAD 427


>gi|239616608|ref|YP_002939930.1| AAA ATPase central domain protein [Kosmotoga olearia TBF 19.5.1]
 gi|239505439|gb|ACR78926.1| AAA ATPase central domain protein [Kosmotoga olearia TBF 19.5.1]
          Length = 427

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 72/330 (21%), Positives = 122/330 (36%), Gaps = 50/330 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRPR  ++  GQ        +   A +  +  +  ++  GPPG GKTT+A+++  
Sbjct: 2   PLSERLRPRNFDDLVGQEHLTGKNGIIRRAVE--SGYVFSMILFGPPGSGKTTIARLIKE 59

Query: 77  ELGVNFRSTSG--------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
            L  +                + K  + A  L       VLF+DEIHRL+   +++  P 
Sbjct: 60  SLADDKYEFVAFSASLQGTADLKKIFERARQLRKYGKHLVLFVDEIHRLNKTQQDVFLPV 119

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           +ED  + L+    E PS       LSR  L+         T  L  R          + E
Sbjct: 120 VEDGTVTLIGATTENPSFEVNPALLSRCRLLVLRQLSPEDTVQLLHR-------ALEKDE 172

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
            L +          +A+++E    +A  + G  R+A   L  + + A     K +  +I 
Sbjct: 173 RLSS--------LDIAISEELIRILAENAGGDARVALNFLETLYENAAAMGYKELNVDIL 224

Query: 247 DA--ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           D    +      K G +  DL                   ISA +   R +  D    YM
Sbjct: 225 DELPIISHKRYRKAGEEHYDL-------------------ISAFIKSMRGSDPDAAVYYM 265

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           ++       P+   R ++ +A + +G+  P
Sbjct: 266 MRMIEAGEDPKFIARRMVILASEDIGLADP 295


>gi|62089026|dbj|BAD92960.1| Werner helicase interacting protein isoform 1 variant [Homo
           sapiens]
          Length = 646

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 65/344 (18%), Positives = 124/344 (36%), Gaps = 31/344 (9%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           R + Q       +RP TL+++ GQ +A     +     +     +  ++  GPPG GKTT
Sbjct: 200 RQMLQGKPLADTMRPDTLQDYFGQSKAVGQDTLLRSLLETNE--IPSLILWGPPGCGKTT 257

Query: 70  LAQVVARELGVNFRST--SGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSII 120
           LA ++A     +           AK  D+  ++   +        + +LFIDEIHR +  
Sbjct: 258 LAHIIASNSKKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKS 317

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++   P +E   + L+    E PS +     LSR  +I            +  R    +
Sbjct: 318 QQDTFLPHVECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAINSL 377

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLA---VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
            ++  +       +   +  +      + D+A   +A  S G  R     L+     A +
Sbjct: 378 GIHVLDSSRPTDPLSHSSNSSSEPAMFIEDKAVDTLAYLSDGDARAGLNGLQLAV-LARL 436

Query: 236 AHAKTITRE-----IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
           +  K   ++          L+     K G  +  + Y      ++         ISA   
Sbjct: 437 SSRKMFCKKSGQSYSPSRVLITENDVKEGLQRSHILYDRAGEEHYNC-------ISALHK 489

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
             R + ++    ++ +       P    R L+  A + +G+  P
Sbjct: 490 SMRGSDQNASLYWLARMLEGGEDPLYVARRLVRFASEDIGLADP 533


>gi|307212720|gb|EFN88396.1| ATPase WRNIP1 [Harpegnathos saltator]
          Length = 562

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 65/348 (18%), Positives = 117/348 (33%), Gaps = 45/348 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP +L  F GQ        +  E  +     + +++  GPPG GKT+LA V+A 
Sbjct: 117 PLAEQMRPTSLLNFIGQEHILGPHTMLSELLQKGE--IPNMILWGPPGCGKTSLANVIAH 174

Query: 77  ELGVN-----FRSTSGPVIAKAGDLAALLT------NLEDRDVLFIDEIHRLSIIVEEIL 125
               +             +A   ++  +++          R ++F+DEIHR + + +++ 
Sbjct: 175 RCKNDASHKLRYVKLSAAMAGVQEVKEVISVAANHVKYAQRTIVFMDEIHRFNKMQQDVF 234

Query: 126 YPAMEDFQLDLM--VGEGPSARSVKINLSRFT----------------LIAATTRVGLLT 167
            P +E   + L+    E PS       LSR                    A T+  G+  
Sbjct: 235 LPHVESGSITLIGATTENPSFSLNSALLSRCRVTVLHKLSISNLVSILRRAVTSLNGVTY 294

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
            P +D              +   I+   +      V       +A    G  RIA   L 
Sbjct: 295 LPEKDETMGNNARKESTSMEEGRILGEPSSDMKFIVDGPTLEWLAGTCDGDARIALGGLE 354

Query: 228 RVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISA 287
                  V        +  + A++ L   K    +  + Y          G    + ISA
Sbjct: 355 MA-----VRSKVPNQEDSPEPAIITLGDVKESLKKTHMLY-------DKKGDQHYDMISA 402

Query: 288 GLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                R + E+    ++ +       P    R L+ +A + +G+  P 
Sbjct: 403 LHKSVRASDENASLYWLTRMISGGEDPVYIARRLVRMASEDVGLADPK 450


>gi|296447422|ref|ZP_06889347.1| AAA ATPase central domain protein [Methylosinus trichosporium OB3b]
 gi|296255042|gb|EFH02144.1| AAA ATPase central domain protein [Methylosinus trichosporium OB3b]
          Length = 436

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 71/346 (20%), Positives = 115/346 (33%), Gaps = 58/346 (16%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D     +            LRPR L+E  GQ                R+ ++  ++F 
Sbjct: 1   MTDLFS-AAPGRDTPHPLADRLRPRRLDEVAGQERLVGPDGALTRMI--RSGSIGSLIFW 57

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIH 115
           GPPG GKTT+A+++A E  + F   S        + K  + A     +    +LF+DEIH
Sbjct: 58  GPPGTGKTTVARLLAHETDLAFVQISAIFTGVADLKKTFEAARARRAVGQGTLLFVDEIH 117

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P MED  + L+    E PS       LSR                    
Sbjct: 118 RFNRAQQDSFLPVMEDGAVTLIGATTENPSFELNAALLSR-------------------- 157

Query: 174 FGIPIRLNFYEIEDLKTIVQRGA--KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
               +     +   ++ ++ R    +   L +  EA   +   + G  R A  L   +  
Sbjct: 158 -ARVLTFERLDAAAIEKLLARAEQTENRPLPLDAEARAALIAMADGDGRAALTLAEDIWR 216

Query: 232 FAEVAHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGL 289
            A     +   R      + R A   DK      +L                   ISA  
Sbjct: 217 AA--GEGEVFDRARLAEVVQRRAPLYDKAQEGHYNL-------------------ISALH 255

Query: 290 SEPRDAIEDLIEPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
              R +  D    Y  +       P    R ++ +A + +G+  P 
Sbjct: 256 KCVRGSDPDAALYYFARMLDAGEDPLFLARRIVRMAVEDIGLADPQ 301


>gi|227496429|ref|ZP_03926715.1| recombination factor protein RarA [Actinomyces urogenitalis DSM
           15434]
 gi|226834048|gb|EEH66431.1| recombination factor protein RarA [Actinomyces urogenitalis DSM
           15434]
          Length = 455

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 75/349 (21%), Positives = 127/349 (36%), Gaps = 59/349 (16%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDH 56
           + D   L    V      ++  LRPR+L E  GQ    +    L   +EA +     L  
Sbjct: 7   LFDAAALAGAEVDDPTRPLADRLRPRSLAEVVGQDHLLAPEAPLGRMVEAGR-----LSS 61

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFI 111
           ++  GPPG GKTT+A+++A   G+ F   S        + K    AA    +  R +LF+
Sbjct: 62  IILWGPPGCGKTTIARLLASGTGLVFEQVSATFSGVAELRKVFSAAAQRRQIGQRTLLFV 121

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DEIHR +   ++   P +ED  + L+    E PS       LSR  ++            
Sbjct: 122 DEIHRFNRAQQDSFLPYVEDGTVVLVGATTENPSFELNGALLSRCQVLVL---------- 171

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKL--TGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
                      +    +    +++R  KL    L +T +A   +   + G  R    ++ 
Sbjct: 172 -----------HRLPDQAQAELIERAEKLSGRRLPLTQQARQALVAMADGDGRYLLGMVE 220

Query: 228 RVRDFAEVAHAKTITREIADAALLRLAIDKMG--FDQLDLRYLTMIARNFGGGPVGIETI 285
           ++   A   H      E  D A L   +      +D+    +  +              I
Sbjct: 221 QLLGLA--PHPGQDRDEPLDVAGLSAVVSARAPLYDKSHEEHYNL--------------I 264

Query: 286 SAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           SA     R +  D    ++ +       P    R L+  A + +G+  P
Sbjct: 265 SALHKSMRGSDPDAALYWLARMLGGGEDPLYVARRLVRFASEDVGMADP 313


>gi|300770508|ref|ZP_07080387.1| AAA family ATPase [Sphingobacterium spiritivorum ATCC 33861]
 gi|300762984|gb|EFK59801.1| AAA family ATPase [Sphingobacterium spiritivorum ATCC 33861]
          Length = 439

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 69/330 (20%), Positives = 120/330 (36%), Gaps = 53/330 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RPR +  + GQ        V   A +     +  ++  GPPG+GKTTLA ++A+
Sbjct: 19  PLAERMRPRNIVGYVGQEHIVGEGAVLRNALEQNN--IPSMILWGPPGVGKTTLALLMAK 76

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAM 129
            L   F S S  + +   D+  ++          +++ +LFIDEIHR S   ++ L  A+
Sbjct: 77  ALDRPFFSLSA-IQSGVKDIREVIEKADQLQKFNQEQPILFIDEIHRFSKSQQDSLLGAV 135

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E   + L+    E PS   +   LSR        +V +L +  ++     +     E E 
Sbjct: 136 ERGLVTLIGATTENPSFEVISALLSRC-------QVYVLKHLTEEELIGIVNSAISEDEF 188

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMR-SRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           LK               +    E  +R S G  R    +L  V + +   +       + 
Sbjct: 189 LKE-----------EKIEVKEYEALLRLSGGDARKLLNVLELVVNASLSLNKPITNEFVL 237

Query: 247 DAALL-RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
                     DK G    D+                   ISA +   R +  +    ++ 
Sbjct: 238 KQVQQNMAIYDKTGEQHYDI-------------------ISAFIKSIRGSDPNAAVYWLA 278

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +       P    R L+ +A + +G   P+
Sbjct: 279 RMIEGGEDPSFIARRLLILASEDIGNANPN 308


>gi|156538268|ref|XP_001602992.1| PREDICTED: similar to werner helicase interacting protein [Nasonia
           vitripennis]
          Length = 522

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 63/342 (18%), Positives = 118/342 (34%), Gaps = 33/342 (9%)

Query: 9   SRNVSQED--ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           S++   +D       +RP ++  + GQ        +  +        + +++  GPPG G
Sbjct: 100 SKDTKPKDSIPLAEKMRPNSIMSYVGQKHVLGPETMLYQ--LLSKTEIPNIILWGPPGCG 157

Query: 67  KTTLAQVVAREL-----GVNFRSTSGPVIAKAGDLAALLT------NLEDRDVLFIDEIH 115
           KT+LA V+A        G          ++   D+   +T          R V+F+DEIH
Sbjct: 158 KTSLANVIANTCQHCPGGKYRYVKLSAAMSGISDVKDAITIASNELKFGRRTVMFMDEIH 217

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P +E   + L+    E PS       LSR  +I            +  R
Sbjct: 218 RFNKTQQDTFLPHIESGTIILIGATTENPSFSLNAALLSRCRVIVLEKLTIENLTEILIR 277

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                    ++ E         +      +  E    +A  S G  RIA   L       
Sbjct: 278 AIKAAGGAVHDFEKPPN----ASINNKFFIDRETVKWLAETSDGDARIALGGLELA---- 329

Query: 234 EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
            +      +   + + L  +++D +         L         G    + ISA     R
Sbjct: 330 -IHSKVPSSEGSSSSGLNFISLDDVKDSLKKTHML-----YDKKGDQHYDMISALHKSVR 383

Query: 294 DAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            + ++    ++ +       P   GR L+ +A + +G++ P 
Sbjct: 384 ASDDNAALYWITRMMAGGEDPVYIGRRLVRMATEDIGLEDPK 425


>gi|18426902|ref|NP_064520.2| ATPase WRNIP1 isoform 1 [Homo sapiens]
 gi|73622085|sp|Q96S55|WRIP1_HUMAN RecName: Full=ATPase WRNIP1; AltName: Full=Werner
           helicase-interacting protein 1
 gi|55661735|emb|CAH73664.1| Werner helicase interacting protein 1 [Homo sapiens]
 gi|119575489|gb|EAW55085.1| Werner helicase interacting protein 1, isoform CRA_a [Homo sapiens]
          Length = 665

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 65/344 (18%), Positives = 124/344 (36%), Gaps = 31/344 (9%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           R + Q       +RP TL+++ GQ +A     +     +     +  ++  GPPG GKTT
Sbjct: 219 RQMLQGKPLADTMRPDTLQDYFGQSKAVGQDTLLRSLLETNE--IPSLILWGPPGCGKTT 276

Query: 70  LAQVVARELGVNFRST--SGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSII 120
           LA ++A     +           AK  D+  ++   +        + +LFIDEIHR +  
Sbjct: 277 LAHIIASNSKKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKS 336

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++   P +E   + L+    E PS +     LSR  +I            +  R    +
Sbjct: 337 QQDTFLPHVECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAINSL 396

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLA---VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
            ++  +       +   +  +      + D+A   +A  S G  R     L+     A +
Sbjct: 397 GIHVLDSSRPTDPLSHSSNSSSEPAMFIEDKAVDTLAYLSDGDARAGLNGLQLAV-LARL 455

Query: 236 AHAKTITRE-----IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
           +  K   ++          L+     K G  +  + Y      ++         ISA   
Sbjct: 456 SSRKMFCKKSGQSYSPSRVLITENDVKEGLQRSHILYDRAGEEHYNC-------ISALHK 508

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
             R + ++    ++ +       P    R L+  A + +G+  P
Sbjct: 509 SMRGSDQNASLYWLARMLEGGEDPLYVARRLVRFASEDIGLADP 552


>gi|257485416|ref|ZP_05639457.1| recombination factor protein RarA [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 228

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 61/237 (25%), Positives = 96/237 (40%), Gaps = 28/237 (11%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L SR    +    + LR   L+E+ GQ    ++ K   EA +    AL  ++F GPPG+G
Sbjct: 3   LFSREPIAQ-PLAARLRATNLDEYVGQEHVLAHGKPLREALEQ--GALHSMIFWGPPGVG 59

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLT-------NLEDRDVLFIDEIHRLSI 119
           KTTLA+++A+    +F + S  V+A   ++   +            R +LF+DE+HR + 
Sbjct: 60  KTTLARLLAKVSDAHFETVSA-VLAGVKEIRQAVEVAKQQAGQYGKRTILFVDEVHRFNK 118

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             ++   P +ED  L  +    E PS       LSR  +    +        L  R    
Sbjct: 119 SQQDAFLPYVEDGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVHRALTE 178

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
                          +RG     L ++DE    +   + G  R    LL    D AE
Sbjct: 179 ---------------ERGLGKRQLTLSDEGFTILMAAADGDGRRMLNLLENASDLAE 220


>gi|227538998|ref|ZP_03969047.1| recombination ATPase [Sphingobacterium spiritivorum ATCC 33300]
 gi|227241201|gb|EEI91216.1| recombination ATPase [Sphingobacterium spiritivorum ATCC 33300]
          Length = 439

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 69/330 (20%), Positives = 120/330 (36%), Gaps = 53/330 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RPR +  + GQ        V   A +     +  ++  GPPG+GKTTLA ++A+
Sbjct: 19  PLAERMRPRNIVGYVGQEHIVGEGAVLRNALEQNN--IPSMILWGPPGVGKTTLALLMAK 76

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAM 129
            L   F S S  + +   D+  ++          +++ +LFIDEIHR S   ++ L  A+
Sbjct: 77  ALDRPFFSLSA-IQSGVKDIREVIEKADQLQKFNQEQPILFIDEIHRFSKSQQDSLLGAV 135

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E   + L+    E PS   +   LSR        +V +L +  ++     +     E E 
Sbjct: 136 ERGLVTLIGATTENPSFEVISALLSRC-------QVYVLKHLTEEELIGIVNSAISEDEF 188

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMR-SRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           LK               +    E  +R S G  R    +L  V + +   +       + 
Sbjct: 189 LKE-----------EKIEVLEYEALLRLSGGDARKLLNVLELVVNASLSLNKPITNEFVL 237

Query: 247 DAALL-RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
                     DK G    D+                   ISA +   R +  +    ++ 
Sbjct: 238 KQVQQNMAIYDKTGEQHYDI-------------------ISAFIKSIRGSDPNAAVYWLA 278

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +       P    R L+ +A + +G   P+
Sbjct: 279 RMIEGGEDPSFISRRLLILASEDIGNANPN 308


>gi|302498881|ref|XP_003011437.1| hypothetical protein ARB_02287 [Arthroderma benhamiae CBS 112371]
 gi|291174988|gb|EFE30797.1| hypothetical protein ARB_02287 [Arthroderma benhamiae CBS 112371]
          Length = 551

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 76/347 (21%), Positives = 126/347 (36%), Gaps = 70/347 (20%)

Query: 6   GLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSN--LKVFIEAAKARAEALDHVLFVGP 62
            + S N  Q+ A +   +RPRTL+E  GQ     N  L+  IE      + +  ++  G 
Sbjct: 129 RVKSSNALQKSAPLAERMRPRTLDEMCGQELVGENGVLRGLIE-----RDRVPSMILWGS 183

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIH 115
            G GKTTLA+V+A  +G  F   +    +   +   L    +        + ++F DEIH
Sbjct: 184 AGTGKTTLARVIASMVGSRFVEINS-TSSGVAECKKLFAEAKNELSLTGRKTIIFCDEIH 242

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R S   +++    +E  Q+ L+    E PS +     LSR                    
Sbjct: 243 RFSKSQQDVFLGPVESGQVTLIGATTENPSFKVQNALLSRCRTFTL-------------- 288

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAV------TDEAACEIAMRSRGTPRIAGRLLR 227
                       E++  I+ R  ++ G          DE    +A  + G  R A  LL 
Sbjct: 289 -------AKLTEENICAILNRALRVEGPNYSPSALVDDELIKYLAAFADGDARTALNLLE 341

Query: 228 RVRDFAEVAHAKTITREIADAALLRL-AIDKMGFDQLDLRYLTMIARNFGGGPVGIETIS 286
              D ++    + +T++    +L R    D+ G    D                   TIS
Sbjct: 342 LAMDLSQ---RENMTKDELKKSLTRTLVYDRAGDQHYD-------------------TIS 379

Query: 287 AGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
           A     R +  D    Y+ +       P    R L+ +A + +G+  
Sbjct: 380 AFHKSIRGSDPDASLYYLARMIQSGEDPLYIARRLIVVASEDVGLAD 426


>gi|228477966|ref|ZP_04062577.1| recombination factor protein RarA [Streptococcus salivarius SK126]
 gi|228250146|gb|EEK09399.1| recombination factor protein RarA [Streptococcus salivarius SK126]
          Length = 422

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 72/326 (22%), Positives = 122/326 (37%), Gaps = 42/326 (12%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            D     +RPRT+ E  GQ       K+     +A    L  ++  GPPG+GKT++A  +
Sbjct: 2   PDNLALRMRPRTISEVIGQKHLVGEGKIIRRMVEA--NMLSSMILYGPPGIGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           A      FR+ +  V +K      A         VL +DEIHRL    ++ L P +E+  
Sbjct: 60  AGTTKFAFRTFNATVDSKKRLQEIAEEAKFSGGLVLLLDEIHRLDKAKQDFLLPLLENGN 119

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + ++    E P         SR  +            PL +       L   E +     
Sbjct: 120 IIMIGATTENPFFSVTPAIRSRVQIFEL--------EPLSNEDIKEAILGVLEDK----- 166

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF--AEVAHAKTITREIADAA 249
            +RG     + + ++A   IA  + G  R A   L        A     + IT +  + +
Sbjct: 167 -ERGFD-FDVQLDEDALDFIATATNGDLRSAYNSLDLAVMSTPASEDGLRHITLDTVENS 224

Query: 250 LLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           L R    +DK G    D+  L+ + ++  G  V              ++       +++ 
Sbjct: 225 LQRSYITMDKDGDGHYDV--LSALQKSIRGSDV------------NASLHYAAR--LVEA 268

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
           G +      R L  IA++ +G+  P 
Sbjct: 269 GDLP--SLARRLTVIAYEDIGLANPD 292


>gi|162286716|ref|YP_001086418.2| recombination factor protein RarA [Acinetobacter baumannii ATCC
           17978]
 gi|193078744|gb|ABO13816.2| putative ATPase [Acinetobacter baumannii ATCC 17978]
 gi|323519866|gb|ADX94247.1| recombination factor protein RarA [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 421

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 70/325 (21%), Positives = 113/325 (34%), Gaps = 53/325 (16%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
             LRPR L E  GQ           +        L  ++F GPPG+GKTT+A ++A+ + 
Sbjct: 10  ERLRPRDLSEIIGQDHLLGEHAPLRQMIDQGH--LPSIIFWGPPGVGKTTIALLLAQAID 67

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
             F S S  +     +L  ++    D    V+FIDEIHR +   ++ L  A+E  ++ L+
Sbjct: 68  RPFVSLSA-LNTGVKELREVIAESGDLLTPVVFIDEIHRFNKSQQDALLGAVEKGKITLI 126

Query: 138 --VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR---FGIPIRLNFYEIEDLKTIV 192
               E PS       LSR  +    +        L +        ++  +  IE+   ++
Sbjct: 127 GATTENPSFEVNSALLSRCQVYTLNSLDSEAIQTLLNNALQNDKFLKERYIHIEEYDALL 186

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           Q  A                       R A  LL  +    E     TI   +      +
Sbjct: 187 QFAAG--------------------DARKALNLLDLIASTFEPEVENTINNAVVVKVAQQ 226

Query: 253 L--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
                DK G    DL                   +SA +   R +  D    +M +    
Sbjct: 227 NIARYDKSGEQHYDL-------------------VSAFIKSIRGSDPDAALYWMARMLKG 267

Query: 311 QRTPR--GRLLMPIAWQHLGIDIPH 333
              P    R ++  A + +G   P+
Sbjct: 268 GEDPVFIARRMLIAASEDIGNSNPN 292


>gi|212638579|ref|YP_002315099.1| recombination factor protein RarA [Anoxybacillus flavithermus WK1]
 gi|212560059|gb|ACJ33114.1| ATPase [Anoxybacillus flavithermus WK1]
          Length = 426

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 74/328 (22%), Positives = 126/328 (38%), Gaps = 47/328 (14%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           ++     +RPRT++E  GQ +   +        K     +  +L  GPPG+GKT+LA  +
Sbjct: 5   QEPLAYRMRPRTIDEVIGQDDVIGSHTALYRMIK--NGYVPSLLLYGPPGVGKTSLAYAI 62

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           A  +   F   +    A   ++  ++ +   E   +LFIDEIHR +   ++ L P +E  
Sbjct: 63  AGTVQRPFYMLNA-TTAGKKEMEEIVADARFEGNVILFIDEIHRFTKAQQDYLLPHVESG 121

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
            + L+    E P         SR   I           PL     + +      +     
Sbjct: 122 LITLIGATTENPFHSINPAVRSRLGQIKQL-------QPLTKEKTLAL------LHRALA 168

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV------RDFAEVAHAKTITRE 244
             +RG     + ++DEA   IA  + G  R A  +L  V      RD   V   +T+   
Sbjct: 169 DRERGLGDWHIDISDEALSIIAEGANGDGRAALTILEEVVYATKQRDQYAVVDVQTVLFC 228

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           + + AL     DK G        L+   ++  G  V              ++  L    +
Sbjct: 229 VENKALT---YDKQGDTYYS--LLSAFQKSIRGSDVDA------------SLHYLAR--L 269

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++ G +  T   R L  IA++ +G+  P
Sbjct: 270 LEGGDL--TAVCRRLAVIAYEDIGLANP 295


>gi|75675584|ref|YP_318005.1| recombination factor protein RarA [Nitrobacter winogradskyi Nb-255]
 gi|74420454|gb|ABA04653.1| Recombination protein MgsA [Nitrobacter winogradskyi Nb-255]
          Length = 443

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 74/345 (21%), Positives = 115/345 (33%), Gaps = 56/345 (16%)

Query: 3   DREGLLSRNVSQEDADIS---LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           D   L +    + DA       LRP+ L +  GQ              + R   L  ++F
Sbjct: 8   DSRSLFAAAGLERDAPHPLPDRLRPQMLSDVVGQDHILGPDGALTRMLETR--TLGSLIF 65

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEI 114
            GPPG GKTT+A+++A    ++F   S        + KA + A          +LF+DE+
Sbjct: 66  WGPPGTGKTTVARLLADATALHFEQLSAVFSGVNDLKKAFEAARARRESGTGTLLFVDEV 125

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++   P MED  + L+    E PS       LSR  ++   +   L    L  
Sbjct: 126 HRFNRAQQDSFLPVMEDGTVVLVGATTENPSFELNAALLSRARVLVFRSLDALAVEKLFV 185

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R                           L +  EA   +   + G  R A  L+  V   
Sbjct: 186 RAEEVEGK-------------------PLPLDAEARAALVRMADGDGRAALTLVEEVWRS 226

Query: 233 AEVAHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
           A     +          L R A   DK      +L                   ISA   
Sbjct: 227 A--REGEVFDAGQLQGVLQRRAPIYDKSADGHYNL-------------------ISALHK 265

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
             R +  D    Y+ +       P    R ++ +A + +G+  P 
Sbjct: 266 SVRGSDPDAALYYLARMIEAGEDPLFLARRVVRMAVEDIGLADPQ 310


>gi|328771508|gb|EGF81548.1| hypothetical protein BATDEDRAFT_29838 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 480

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 72/324 (22%), Positives = 115/324 (35%), Gaps = 64/324 (19%)

Query: 23  RPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           RP +L EF G          L+  IE+ K     +  ++  GPPG GKTTLA+++A+ELG
Sbjct: 99  RPTSLNEFFGHEAVVGQTSLLRQLIESKK-----VPCMILWGPPGSGKTTLARIIAKELG 153

Query: 80  VNFRSTSG------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           V+F+  S        V     +          + +LF+DEIHR +   ++   P +E  +
Sbjct: 154 VHFKEMSATIHNVSDVRKSCEEARTQRKLTGKKSILFLDEIHRFTKAQQDFFLPPVEQGE 213

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
              +    E PS R     LSR                          ++ YE   L  I
Sbjct: 214 FTFIAATTENPSFRVNAALLSRCK---------------------VFVMDKYESASLCQI 252

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           ++         + D     I+    G  R++   L    D A  +    +T      AL 
Sbjct: 253 LRHS----PFVIPDNVIAYISTMCDGDARVSINALEMALDAAVHSKLDQLTLPAVQLALS 308

Query: 252 RLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           +     D  G +  ++                   ISA     R +  D    +M +  F
Sbjct: 309 KSHLLYDHDGEEHYNI-------------------ISALHKSMRGSDADAALYWMGRMIF 349

Query: 310 IQRTPR--GRLLMPIAWQHLGIDI 331
               P    R L+  A + +G+  
Sbjct: 350 AGEDPLYVARRLVRFASEDIGLAD 373


>gi|149371615|ref|ZP_01891031.1| putative ATPase, AAA family protein [unidentified eubacterium
           SCB49]
 gi|149355242|gb|EDM43802.1| putative ATPase, AAA family protein [unidentified eubacterium
           SCB49]
          Length = 425

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 70/331 (21%), Positives = 119/331 (35%), Gaps = 54/331 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RPRTL+ +  Q              K        ++F GPPG GKTTLA ++A 
Sbjct: 4   PLAERIRPRTLDTYLSQQHLVGKGGSLTSQIKT--GVFSSMIFWGPPGTGKTTLASIIAE 61

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD--------VLFIDEIHRLSIIVEEILYPA 128
                F + S  + +    +  ++   +  D        +LFIDEIHR S   ++ L  A
Sbjct: 62  TSDRPFYTLSA-IDSGVAAVREVIAKAKQGDGLFTTKNPILFIDEIHRFSKSQQDSLLGA 120

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           +E   + L+    E PS   +   LSR  +    +      N L +R  I   +    + 
Sbjct: 121 VEKGWVTLIGATTENPSFEVIPALLSRCQVYILKSFSKDDLNQLLERALINDTI----LS 176

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
               I++    L  L             S G  R    +L  V   +E     T+T ++ 
Sbjct: 177 KKDIILKETEALLRL-------------SGGDARKLLNMLELVI-LSEGTDKVTVTNDLV 222

Query: 247 DAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
            A + +     DK G    D+                   ISA +   R +  +    ++
Sbjct: 223 LAKVQKNTVLYDKTGEQHYDI-------------------ISAFIKSIRGSDPNAAVYWL 263

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +        +   R L+ +A + +G+  P+
Sbjct: 264 ARMIEGGEDVKFIARRLLILASEDIGLANPN 294


>gi|120437189|ref|YP_862875.1| recombination factor protein RarA [Gramella forsetii KT0803]
 gi|117579339|emb|CAL67808.1| AAA family ATPase [Gramella forsetii KT0803]
          Length = 424

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 68/332 (20%), Positives = 116/332 (34%), Gaps = 59/332 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP+TLE++  Q           +  +     +  ++F GPPG+GKTTLA ++A 
Sbjct: 4   PLAERLRPKTLEDYLSQQHLIGKNGALKQQIQQ--GIIPSMIFWGPPGVGKTTLANIIAT 61

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE--------DRDVLFIDEIHRLSIIVEEILYPA 128
           E G  F + S  + +   D+  ++   +           +LFIDEIHR S   ++ L  A
Sbjct: 62  ESGRPFFTLSA-ISSGVKDVREVIEKAKKSEGLFTTKSPILFIDEIHRFSKSQQDSLLGA 120

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           +E   + L+    E PS   +   LSR  +                          +  E
Sbjct: 121 VEKGWVTLIGATTENPSFEVISALLSRCQVYILK---------------------PFSKE 159

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMR----SRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           DL  ++QR  K      +     +        S G  R    +   +   AE     T  
Sbjct: 160 DLIALLQRAIKEDKSIASKNVKLKETEALLRLSGGDARKLLNIFELLVTSAEKNVEITND 219

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             ++      +  DK G    D+                   ISA +   R +  +    
Sbjct: 220 LVLSKVQQNTVLYDKTGEQHYDI-------------------ISAFIKSIRGSDPNAAVY 260

Query: 303 YMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           ++ +        +   R L+ +A + +G   P
Sbjct: 261 WLARMIEGGEDVKFIARRLLILASEDIGNANP 292


>gi|62898918|dbj|BAD97313.1| Werner helicase interacting protein isoform 1 variant [Homo
           sapiens]
          Length = 665

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 65/344 (18%), Positives = 123/344 (35%), Gaps = 31/344 (9%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           R + Q       +RP TL+++ GQ +A     +     +     +  ++  GPPG GKTT
Sbjct: 219 RQMLQGKPLADTMRPDTLQDYFGQSKAVGQDTLLRSLLETNE--IPSLILWGPPGCGKTT 276

Query: 70  LAQVVARELGVNFRST--SGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSII 120
           LA ++A     +           AK  D+  ++   +        + +LFIDEIHR +  
Sbjct: 277 LAHIIASNSKKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKS 336

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++   P +E   + L+    E PS +     LSR  +I            +  R    +
Sbjct: 337 QQDTFLPHVECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAINSL 396

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLA---VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
            ++  +       +   +  +      + D+A   +A  S G  R     L+     A +
Sbjct: 397 GIHVLDSSRPTDPLSHSSNSSSEPAMFIEDKAVDTLAYLSDGDARAGLNGLQLAV-LARL 455

Query: 236 AHAKTITRE-----IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
           +  K   ++          L+     K G  +  + Y       +         ISA   
Sbjct: 456 SSRKMFCKKSGQSYSPSRVLITENDVKEGLQRSHILYDRAGEEYYNC-------ISALHK 508

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
             R + ++    ++ +       P    R L+  A + +G+  P
Sbjct: 509 SMRGSDQNASLYWLARMLEGGEDPLYVARRLVRFASEDIGLADP 552


>gi|308174454|ref|YP_003921159.1| helicase associated protein [Bacillus amyloliquefaciens DSM 7]
 gi|307607318|emb|CBI43689.1| putative helicase associated protein (ATPase, AAA family) [Bacillus
           amyloliquefaciens DSM 7]
 gi|328554373|gb|AEB24865.1| recombination factor protein RarA [Bacillus amyloliquefaciens
           TA208]
 gi|328912777|gb|AEB64373.1| putative helicase associated protein (ATPase, AAA family) [Bacillus
           amyloliquefaciens LL3]
          Length = 422

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 73/325 (22%), Positives = 123/325 (37%), Gaps = 43/325 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP  +E+  GQ       K+     +A+   L  ++  GPPG+GKT++A  +A 
Sbjct: 3   PLAYRMRPANIEDIIGQEHLVKEDKIIGRMVRAKH--LSSMILYGPPGIGKTSIATAIAG 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
              + FR  +  VI    D+  ++   +   + +L +DE+HRL    ++ L P +E+  +
Sbjct: 61  STSIAFRKLNA-VIHNKKDMEIVVQEAKMSGQVILILDEVHRLDKGKQDFLLPYLENGMI 119

Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            L+      P         SR  +         L      R                T  
Sbjct: 120 ILIGATTANPYHAINPAIRSRTQIFELEPLTPDLIKQALRR--------------ALTDE 165

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT--ITREIADAAL 250
            RG     ++V DEA    A    G  R A   L       + +   T  ITRE A+  L
Sbjct: 166 HRGLGSYSVSVDDEAMDHFAQGCGGDVRSALNALELAVLSTKESSDGTIRITRETAEECL 225

Query: 251 LR--LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            +     DK G    D+  L+   ++  G            S+   A+  L    +I+ G
Sbjct: 226 QKKSYTHDKDGDAHYDV--LSAFQKSIRG------------SDANAALHYLAR--LIEAG 269

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIPH 333
            ++     R L+ IA++ +G+  P 
Sbjct: 270 DLESIS--RRLLVIAYEDIGLASPQ 292


>gi|326405680|gb|ADZ62751.1| chromosome segregation helicase [Lactococcus lactis subsp. lactis
           CV56]
          Length = 419

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 71/321 (22%), Positives = 123/321 (38%), Gaps = 45/321 (14%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +RPR ++E  GQ       K+     + +   L  ++  GPPG+GKT++A  +A  +
Sbjct: 6   ARRMRPRNIDEIVGQKHLVGKGKIIRRMVETQ--LLSSMILYGPPGIGKTSIASAIAGTM 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
            V FR+ +     K   L  + +  E   + VL +DEIHRL    ++ L P +E+ Q+ L
Sbjct: 64  NVAFRTFNATTDTKKR-LQEIASEAEFSGQLVLLLDEIHRLDKPKQDFLLPLLENGQVIL 122

Query: 137 M--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           +    E P    V    SR  +            P    F + + L   E          
Sbjct: 123 IGATTENPYFSVVPAIRSRVQIFELKPL-----EPEDLEFAVNLSLQDKECGF------- 170

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
                 + + D+A   +   + G  R     L      +E  H   +T +  + +L R A
Sbjct: 171 ---DFDVTIDDDALYFLIHSTNGDLRSTFNALELAVLSSEEHH---VTLDDMENSLQRKA 224

Query: 255 --IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
              DK G    D   L+ + ++  G  V              ++       +I+ G +Q 
Sbjct: 225 ATFDKDGDAHYD--LLSALQKSIRGSDV------------NASLHYAAR--LIEGGDLQ- 267

Query: 313 TPRGRLLMPIAWQHLGIDIPH 333
               R L  +A++ +G+  P 
Sbjct: 268 -SLARRLTVMAYEDIGLANPD 287


>gi|28378917|ref|NP_785809.1| recombination factor protein RarA [Lactobacillus plantarum WCFS1]
 gi|254557122|ref|YP_003063539.1| recombination factor protein RarA [Lactobacillus plantarum JDM1]
 gi|300769682|ref|ZP_07079565.1| crossover junction endodeoxyribonuclease [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|28271754|emb|CAD64660.1| chromosome segregation helicase (putative) [Lactobacillus plantarum
           WCFS1]
 gi|254046049|gb|ACT62842.1| recombination factor protein RarA [Lactobacillus plantarum JDM1]
 gi|300492725|gb|EFK27910.1| crossover junction endodeoxyribonuclease [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
          Length = 426

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 70/323 (21%), Positives = 121/323 (37%), Gaps = 41/323 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+TL++  GQ +     K+     KA+   L  ++  GPPG GKT++A  +A 
Sbjct: 4   PLAYRMRPKTLKDVVGQQQLVGPGKIIARMVKAK--RLSSMILYGPPGTGKTSIASAIAG 61

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR  +    +K    + A    +    +L +DEIHRL    ++ L P +E  ++ 
Sbjct: 62  STKYAFRMLNAATDSKKQLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPHLESGRII 121

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           L+    E P         SR  +            PL D          + +E      +
Sbjct: 122 LIGATTENPYISINPAIRSRTQIFQVF--------PLTDD------DIQHAVERALADEK 167

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT--ITREIADAALL 251
            G     + +   A   +   + G  R A   L      +  A   T  I+++  +  L 
Sbjct: 168 NGLGSYHVDLAPAAMHHLCTATNGDLRSALNGLELAVLSSSPADDGTIAISQQTIEECLQ 227

Query: 252 RLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           + A+  DK G    D      +   F          S   S+   A+  L    +++ G 
Sbjct: 228 KKALSADKDGDAHYD------VISAFQK--------SIRGSDVNAALHYLAR--LVEAGD 271

Query: 310 IQRTPRGRLLMPIAWQHLGIDIP 332
           ++     R LM IA++ +G+  P
Sbjct: 272 LKSIM--RRLMVIAYEDIGLANP 292


>gi|300741584|ref|ZP_07071605.1| ATPase, AAA family [Rothia dentocariosa M567]
 gi|300380769|gb|EFJ77331.1| ATPase, AAA family [Rothia dentocariosa M567]
          Length = 481

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 79/347 (22%), Positives = 130/347 (37%), Gaps = 44/347 (12%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGL 65
           S   + +      +RPR ++E  GQ       S L+V   A K+       V+  GPPG 
Sbjct: 24  SSRTASQAPLAVRMRPRHVDEVFGQAHLLTPGSPLRVLAGADKSGPAGPSSVILYGPPGT 83

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLS 118
           GKTTLA V+AR  G  F   S  + A   D+ A++              VLF+DEIHR +
Sbjct: 84  GKTTLAHVIARAPGRKFVELSA-ITAGVKDVRAVMDQALLDRDMYGTTTVLFLDEIHRFT 142

Query: 119 IIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
              ++ L P +E+  + L+    E PS   +    S     +   RV  L          
Sbjct: 143 KAQQDALLPGVENRWVILVAATTENPSFSVI----SPLLSRSLLLRVHSL---------- 188

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTG-----LAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
                  E  D+++++ R  + +        + ++A   +A  S G  R +   L     
Sbjct: 189 -------EPADIESLINRALEDSRGFNGAAVIDEDARAHLAAVSGGDARRSLTSLEAAAA 241

Query: 232 FAEVAHAKTITREIADAALLRLAIDK---MGFDQLDLRYLTMIARNFGGGPVGIETISAG 288
            A   H +  + +    +   + + K   +              R   GG    + ISA 
Sbjct: 242 IAFSEHEQVESPDENAESGGEVNLSKPVRITLAHAQEAVDRAAVRYDKGGDQHYDVISAF 301

Query: 289 LSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +   R +  D    Y+ +       PR   R +M  A + +G+  P 
Sbjct: 302 IKSIRGSDADAAVHYLARMLEGGEDPRFVARRIMIAASEDIGLADPQ 348


>gi|306829967|ref|ZP_07463154.1| crossover junction endodeoxyribonuclease [Streptococcus mitis ATCC
           6249]
 gi|304427978|gb|EFM31071.1| crossover junction endodeoxyribonuclease [Streptococcus mitis ATCC
           6249]
          Length = 429

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 68/326 (20%), Positives = 118/326 (36%), Gaps = 42/326 (12%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            D     +RP+T+++  GQ       K+     +A    L  ++  GPPG+GKT++A  +
Sbjct: 8   PDNLALRMRPKTIDQVIGQEHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAI 65

Query: 75  ARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           A      FR+ +  V +K      A         VL +DEIHRL    ++ L P +E   
Sbjct: 66  AGTTKYAFRTFNATVDSKKRLQEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGL 125

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + ++    E P         SR  +                            I+   T 
Sbjct: 126 VVMIGATTENPFFSVTPAIRSRVQIFELEPLSNQDVKE--------------AIQIALTD 171

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI--TREIADAA 249
            +RG     + + ++A   IA  + G  R A   L                 T +I + +
Sbjct: 172 PERGFD-FPVELDEDALDFIATSTNGDLRSAFNSLDLAVLSTPENDKGIRHITLDIMENS 230

Query: 250 LLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           L R    +DK G    D+  L+ + ++  G  V              ++  +    +I+ 
Sbjct: 231 LQRSYITMDKDGDGHYDV--LSALQKSIRGSDVDA------------SLHYVAR--LIEA 274

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
           G +      R L  IA++ +G+  P 
Sbjct: 275 GDLP--SLARRLTVIAYEDIGLANPE 298


>gi|293610473|ref|ZP_06692773.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826817|gb|EFF85182.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 421

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 74/327 (22%), Positives = 115/327 (35%), Gaps = 57/327 (17%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
             LRPR L E  GQ           +        L  ++F GPPG+GKTT+A ++A+ + 
Sbjct: 10  ERLRPRDLSEIIGQDHLLGEHAPLRQMIDQGH--LPSIIFWGPPGVGKTTIALLLAQAID 67

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
             F S S  +     +L  ++    D    V+FIDEIHR +   ++ L  A+E  ++ L+
Sbjct: 68  RPFVSLSA-LNTGVKELREVIAESGDLLTPVVFIDEIHRFNKSQQDALLGAVEKGKITLI 126

Query: 138 --VGEGPSARSVKINLSRFTLIAATTRVGL-----LTNPLQDRFGIPIRLNFYEIEDLKT 190
               E PS       LSR  +    +         L N LQ    +     +  IE+   
Sbjct: 127 GATTENPSFEVNSALLSRCQVYTLNSLDSEAIQTLLNNALQSDKFLK--ERYIHIEEYDA 184

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           ++Q  A                       R A  LL  +    E     TIT  +     
Sbjct: 185 LIQFAAG--------------------DARKALNLLDLIASTFEPEVENTITNAVVVKVA 224

Query: 251 LRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            +     DK G    DL                   +SA +   R +  D    +M +  
Sbjct: 225 QQNIARYDKSGEQHYDL-------------------VSAFIKSIRGSDPDATLYWMARML 265

Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIPH 333
                P    R ++  A + +G   P+
Sbjct: 266 KGGEDPVFIARRMLIAASEDIGNSNPN 292


>gi|123965322|ref|YP_001010403.1| recombination factor protein RarA [Prochlorococcus marinus str. MIT
           9515]
 gi|123199688|gb|ABM71296.1| putative ATPase, AAA family [Prochlorococcus marinus str. MIT 9515]
          Length = 428

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 76/344 (22%), Positives = 138/344 (40%), Gaps = 47/344 (13%)

Query: 4   REGLLSR--NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
            + L S    +         LRP+TL++F GQ     N  +   A     + + +++F G
Sbjct: 2   SDNLFSNAFQIQSNAPLADRLRPKTLDDFFGQESILGNNSLLRNAIL--NDKVGNIIFSG 59

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEI 114
           PPG+GKTTL ++++     +       V++   +L   + N ++R        +LFIDE+
Sbjct: 60  PPGVGKTTLIEIISSNT-RSALIKLNAVLSSIKELRTEIANAKERLLSSNRKTILFIDEV 118

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR + I ++ L P++E+  +  +    E P     K  +SR  + +    + L TN L  
Sbjct: 119 HRFTSIQQDALLPSIENGTITFIGATTENPFFAVNKALISRARVFSL---IPLNTNDL-- 173

Query: 173 RFGIPIRLNFYE-IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
           R  I   +N+Y  +ED K I           +T+EA   +   S G  R     L     
Sbjct: 174 RKIIEKVVNYYACLEDPKAI----------EITEEAISHLIKYSGGDARNLINALESGIS 223

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
             +    K +  +++ A        +    + ++ Y          G    + ISA +  
Sbjct: 224 ITKENKDKLVFIDLSIA--------EDSIQKKNIVY-------DKNGQNHFDVISAFIKS 268

Query: 292 PRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            R +  D    ++         P    R L+  A + +G+  P+
Sbjct: 269 IRGSDPDATLYWLANMVEAGEDPNFIFRRLLISASEDIGLADPN 312


>gi|322388766|ref|ZP_08062363.1| crossover junction endodeoxyribonuclease [Streptococcus infantis
           ATCC 700779]
 gi|321140385|gb|EFX35893.1| crossover junction endodeoxyribonuclease [Streptococcus infantis
           ATCC 700779]
          Length = 429

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 68/326 (20%), Positives = 117/326 (35%), Gaps = 42/326 (12%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            D     +RP+T+++  GQ       K+     +A    L  ++  GPPG+GKT++A  +
Sbjct: 8   PDNLAFRMRPQTIDQVIGQEHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAI 65

Query: 75  ARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           A      FR+ +  V +K      A         VL +DEIHRL    ++ L P +E   
Sbjct: 66  AGTTKYAFRTFNATVDSKKRLQEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGL 125

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + ++    E P         SR  +                            ++   T 
Sbjct: 126 VIMIGATTENPFFSVTPAIRSRVQIFELEPLSNQDVKE--------------AVQIALTD 171

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI--TREIADAA 249
            +RG     + + D+A   IA  + G  R A   L                 T +I + +
Sbjct: 172 PERGFD-FPVELDDDALDFIATSTNGDLRSAFNSLDLAVLSTPENDDGVRHITLDIMENS 230

Query: 250 LLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           L R    +DK G    D+  L+ + ++  G  V              ++       +I+ 
Sbjct: 231 LQRSYITMDKDGDGHYDV--LSALQKSIRGSDVDA------------SLHYAAR--LIEA 274

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
           G +      R L  IA++ +G+  P 
Sbjct: 275 GDLP--SLARRLTVIAYEDIGLANPE 298


>gi|308070341|ref|YP_003871946.1| hypothetical protein PPE_03591 [Paenibacillus polymyxa E681]
 gi|305859620|gb|ADM71408.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
          Length = 436

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 87/228 (38%), Gaps = 26/228 (11%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD       +          LRP +L+E+ GQ       K+   A +A  + +  +L  G
Sbjct: 1   MDLFSYSQESTPSNRLLADRLRPTSLDEYIGQEHVVGPGKLLRRAIEA--DQVSSILLYG 58

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEI 114
           PPG GKTTLA ++++    +F   +  V A   D+  ++   +        + +LF+DE+
Sbjct: 59  PPGCGKTTLAHIISQHTQGDFVRLNA-VEASVKDVREVIDRAQTNKSMYGKKTILFLDEV 117

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++ L PA+E   +  +    E P        +SR TL          +     
Sbjct: 118 HRFNSSRQDALLPAVEKGTIVFIGATTENPFHYVNGALMSRSTLFQLEALTQEHSLAAMR 177

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPR 220
           R                +   +G     L V + A   IA  + G  R
Sbjct: 178 R--------------ALSDADKGLGYMQLQVDEAALAHIASMANGDIR 211


>gi|197104728|ref|YP_002130105.1| ATPase, AAA family [Phenylobacterium zucineum HLK1]
 gi|196478148|gb|ACG77676.1| ATPase, AAA family [Phenylobacterium zucineum HLK1]
          Length = 434

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 74/344 (21%), Positives = 117/344 (34%), Gaps = 56/344 (16%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D          Q       LRP+ LEE  GQ             A+AR   L  ++  
Sbjct: 1   MADLFEAAGLTPQQPSPLADRLRPQRLEEVVGQDHLLGPDGPIRRMAEAR--RLSSMILW 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFIDEI 114
           GPPG GKTT+A+++A+E G  F+  S  V +   DL                 +LF+DEI
Sbjct: 59  GPPGTGKTTIARLLAKEAGYEFQQLSA-VFSGVADLKKAFEQARARRAAGQATLLFVDEI 117

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++   P +E+  + L+    E PS       LSR  +         +   L +
Sbjct: 118 HRFNRAQQDGFLPFVEEGIVTLVGATTENPSFELNGALLSRCQV--------YVLKRLDE 169

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
                +       E              L +  +A   +   + G  R    L   + + 
Sbjct: 170 AALEALLAKAEAHEGR-----------PLPLEPDARAALTALADGDGRYLLTLSETLFNI 218

Query: 233 AEVAHAKTITREIADAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
           A    AK +T +     L +   A DK   +  +L                   +SA   
Sbjct: 219 AS---AKPLTTKELGQILQKRSPAYDKDREEHYNL-------------------VSALHK 256

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
             R +  D    ++ +       P    R L+  A + +G   P
Sbjct: 257 SIRGSDPDAALYWLARMLQGGEDPLFIARRLIRAAAEDIGEADP 300


>gi|199597549|ref|ZP_03210978.1| recombination factor protein RarA [Lactobacillus rhamnosus HN001]
 gi|258508206|ref|YP_003170957.1| AAA family ATPase [Lactobacillus rhamnosus GG]
 gi|199591572|gb|EDY99649.1| recombination factor protein RarA [Lactobacillus rhamnosus HN001]
 gi|257148133|emb|CAR87106.1| ATPase, AAA family [Lactobacillus rhamnosus GG]
          Length = 431

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 66/319 (20%), Positives = 108/319 (33%), Gaps = 41/319 (12%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            +RP+ L+E  GQ E     ++      A    L  ++  GPPG GKT++A  +A     
Sbjct: 8   RMRPQNLDEVVGQQELVGPGRIIRRMVSAH--RLSSMILYGPPGTGKTSIASAIAGSTKY 65

Query: 81  NFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137
            FR  +     K    + A    +    +L +DEIHRL    ++ L P +E  ++ L+  
Sbjct: 66  AFRILNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPLLESGRIVLIGA 125

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
             E P         SR  +           +   DR                   +RG  
Sbjct: 126 TTENPYMNIQPAIRSRTQIFQVKPLTPTDISTAIDR--------------ALADDKRGLG 171

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE--IADAALLR--L 253
              + +T EA   +   + G  R A   L             TI  +      +L +  +
Sbjct: 172 KYQVDLTPEARDYLTHTTNGDLRAALNGLELAVLSTPAKSDGTIIIDLTTIQQSLQKPAI 231

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
           + D  G    D      I   F     G +  +A                +I  G +   
Sbjct: 232 SGDTNGDAHYD------IISAFQKSIRGSDVNAALH----------YLARLIAIGDLNSI 275

Query: 314 PRGRLLMPIAWQHLGIDIP 332
              R L+ IA++ +G+  P
Sbjct: 276 T--RRLLVIAYEDIGLANP 292


>gi|295135714|ref|YP_003586390.1| recombination factor protein RarA [Zunongwangia profunda SM-A87]
 gi|294983729|gb|ADF54194.1| recombination factor protein RarA [Zunongwangia profunda SM-A87]
          Length = 424

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 64/334 (19%), Positives = 116/334 (34%), Gaps = 59/334 (17%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            +     LRP+TL+++  Q           +  K     +  ++F GPPG+GKTTLA ++
Sbjct: 2   NEPLAERLRPKTLDQYLSQTHLIGEKGALRQQIKR--GIIPSMIFWGPPGVGKTTLANII 59

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRD--------VLFIDEIHRLSIIVEEILY 126
           A E    F + S  + +   D+  ++   +  D        +LFIDEIHR S   ++ L 
Sbjct: 60  ANESDRPFFTLSA-ISSGVKDVREVIEKAKRSDGLFTTKSPILFIDEIHRFSKSQQDSLL 118

Query: 127 PAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
            A+E   + L+    E PS   +   LSR  +                          + 
Sbjct: 119 GAVEKGWVTLIGATTENPSFEVISALLSRCQVYVLK---------------------PFS 157

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMR----SRGTPRIAGRLLRRVRDFAEVAHAKT 240
            EDL  ++ R  K   +  +     +        S G  R    +   + + ++     T
Sbjct: 158 KEDLIALLNRAMKEDKIIASKNIKLKETEAILRLSGGDARKLLNIFELLVNSSDEGTEIT 217

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
                       +  DK G    D+                   ISA +   R +  +  
Sbjct: 218 NDMVFEKVQQNTVLYDKTGEQHYDI-------------------ISAFIKSIRGSDPNGA 258

Query: 301 EPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
             ++ +        +   R ++ +A + +G   P
Sbjct: 259 VYWLARMIEGGEDVKFIARRMLILASEDIGNANP 292


>gi|315604260|ref|ZP_07879326.1| AAA family ATPase [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315313966|gb|EFU62017.1| AAA family ATPase [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 447

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 81/350 (23%), Positives = 128/350 (36%), Gaps = 53/350 (15%)

Query: 1   MMDREGLLSRNVSQEDADIS---LLRPRTLEEFTGQVEACS---NLKVFIEAAKARAEAL 54
           + D E    R V   DAD      +RP +L+E  GQ         L+  +  +     A+
Sbjct: 3   LFDSESFDDRGVPACDADAPLAVRMRPTSLDEVVGQGHLLGEGAPLRRLLTPSSRDGVAV 62

Query: 55  DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------D 107
             V+  GPPG GKTTLA ++AR  G +F   S  V +  GD+ +++     R        
Sbjct: 63  SSVVLWGPPGTGKTTLAYLIARASGRHFVELSA-VSSGVGDVRSVVQAARRRIASGDEET 121

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGL 165
           VLF+DE+HR S   ++ L PA+E+  + L+    E PS   +            +  + L
Sbjct: 122 VLFVDEVHRFSKAQQDSLLPAVENRWVVLVAATTENPSFSVISP--------LLSRSLLL 173

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
              PL+      +       E       RG       + DEA   +   +    R +  L
Sbjct: 174 TLRPLESDAIEELIRRALTDE-------RGLGG-RFGIEDEAVAGLVRLAGADARKSLTL 225

Query: 226 LRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETI 285
           L      A+    + IT    +AA     +        D+                    
Sbjct: 226 LEAAAGVADDRGERLITVAGVEAAANSALVRWGRDQHYDVA------------------- 266

Query: 286 SAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           SA +   R +  D    Y+ +       PR   R +M  A + +G+  P 
Sbjct: 267 SAFIKSMRGSDVDASLHYLARMIEAGEDPRFIARRIMIAASEEVGMAAPE 316


>gi|239906458|ref|YP_002953199.1| putative ATPase [Desulfovibrio magneticus RS-1]
 gi|239796324|dbj|BAH75313.1| putative ATPase [Desulfovibrio magneticus RS-1]
          Length = 408

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 86/324 (26%), Positives = 133/324 (41%), Gaps = 55/324 (16%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           +++      +RP  LE+F GQ    S L   + A +     L  +L  GPPG GK+TLA 
Sbjct: 6   NEKRPLAERIRPAKLEDFVGQAHVISRLTNMLAAPR-----LPSLLLFGPPGCGKSTLAL 60

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++AR  G  +   S P       LAAL   ++ +++L +DE+HR S   ++   P +E  
Sbjct: 61  ILARAKGRPYVRVSAPEAG----LAALRELIKGKEILILDELHRFSKAQQDFFLPILETG 116

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           ++ L+    E PS    +  LSR  ++    R+G LT+P                  L  
Sbjct: 117 EIVLLATTTENPSFSVTRQLLSRLHVL----RLGPLTHP-----------------QLMV 155

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           + +RGA+  G+A+  E+   IAM S G  R    L+      +E   A    R+    AL
Sbjct: 156 LAERGAREAGMALAKESLETIAMLSSGDGRTLLNLVEYTAALSEDKRAPDELRKHLPEAL 215

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
            R   D+ G    +L                    SA +   R +  D    Y+      
Sbjct: 216 AR--GDRDGDSHYELA-------------------SAMIKSIRGSDPDAALYYLACMLES 254

Query: 311 QRTPR--GRLLMPIAWQHLGIDIP 332
              PR   R LM  A + +G+  P
Sbjct: 255 GEDPRFCCRRLMISASEDIGLADP 278


>gi|108761837|ref|YP_631057.1| recombination factor protein RarA [Myxococcus xanthus DK 1622]
 gi|108465717|gb|ABF90902.1| ATPase, AAA family [Myxococcus xanthus DK 1622]
          Length = 444

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 73/326 (22%), Positives = 111/326 (34%), Gaps = 44/326 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RPRT +EF GQ       +   +  + +  A+   LF GPPG+GKTTLA+++A 
Sbjct: 19  PLAERMRPRTPDEFIGQSHLLGPGRPLRQLIERK--AIVSSLFWGPPGVGKTTLARMMAT 76

Query: 77  ELGVNFRSTSGP------VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
            +   F   S        +     +   L      R VLF+DEIHR +  V+E   P +E
Sbjct: 77  GVDAEFVILSAVSDGIPRIREVVAEAERLRNQYSRRTVLFVDEIHRWAKNVQEQALPHVE 136

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTR-VGLLTNPLQDRFGIPIRLNFYEIED 187
                L+    E  S       +SR  +       V  + + L    G            
Sbjct: 137 SGLFVLLGATTENVSFEVRPALVSRCRVFQLKELTVADIQSALTRALG------------ 184

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
                +RG     L+V + A   +A    G  R A   L             T       
Sbjct: 185 ---DSKRGLGARNLSVGEGALTLLAKGGVGDVRKALGALELAASLTADGAEITPETAREA 241

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
                   DK G    D   L+ + ++  G  V      A                ++Q 
Sbjct: 242 VGTSLSRHDKDGDQHYD--LLSALQKSCRGSNVQGAVFWAA--------------KLLQT 285

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
           G +      R L  IA + +G+ +P 
Sbjct: 286 GDVA--SLWRRLKVIAVEDVGMAMPE 309


>gi|114605198|ref|XP_518204.2| PREDICTED: Werner helicase interacting protein isoform 4 [Pan
           troglodytes]
          Length = 576

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 65/344 (18%), Positives = 124/344 (36%), Gaps = 31/344 (9%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           R + Q       +RP TL+++ GQ +A     +     +     +  ++  GPPG GKTT
Sbjct: 219 RQMLQGKPLADTMRPDTLQDYFGQSKAVGQDTLLRSLLETNE--IPSLILWGPPGCGKTT 276

Query: 70  LAQVVARELGVNFRST--SGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSII 120
           LA ++A     +           AK  D+  ++   +        + +LFIDEIHR +  
Sbjct: 277 LAHIIASNSKKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKS 336

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++   P +E   + L+    E PS +     LSR  +I            +  R    +
Sbjct: 337 QQDTFLPHVECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAINSL 396

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLA---VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
            ++  +       +   +  +      + D+A   +A  S G  R     L+     A +
Sbjct: 397 GIHVLDSSRPTDPLSHSSNSSSEPAMFIEDKAVDTLAYLSDGDARAGLNGLQLAV-LARL 455

Query: 236 AHAKTITRE-----IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
           +  K   ++          L+     K G  +  + Y      ++         ISA   
Sbjct: 456 SSRKMFCKKSGQSYSPSRVLITENDVKEGLQRSHILYDRAGEEHYNC-------ISALHK 508

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
             R + ++    ++ +       P    R L+  A + +G+  P
Sbjct: 509 SMRGSDQNASLYWLARMLEGGEDPLYVARRLVRFASEDIGLADP 552


>gi|323339472|ref|ZP_08079751.1| AAA family ATPase [Lactobacillus ruminis ATCC 25644]
 gi|323093086|gb|EFZ35679.1| AAA family ATPase [Lactobacillus ruminis ATCC 25644]
          Length = 424

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 67/317 (21%), Positives = 127/317 (40%), Gaps = 37/317 (11%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            +RP+ ++E  GQ       K+     +A+   L  ++  GPPG GKT++A  +A     
Sbjct: 7   RMRPKDIDEIVGQRHLVGEGKIIRRMVQAK--LLSSMILYGPPGTGKTSIASAIAGSTKY 64

Query: 81  NFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
            FR  +    +K   +  AL   +    +L +DEIHRL+   ++ L P +E  ++ +++G
Sbjct: 65  AFRILNAATDSKKELEQVALEAKMSGTVILMLDEIHRLTKPKQDFLLPMLESGKI-ILIG 123

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199
                  + IN +    I + T++  +    ++     I     + E       RG    
Sbjct: 124 ATTENPYISINPA----IRSRTQIFEVQKLSEEDIKTAINRALQDDE-------RGLGKY 172

Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK--TITREIADAALLRLA--I 255
            + + D+A   +A  + G  R A   L           +    +T EI +  + + A   
Sbjct: 173 HVVLDDDAMIHLARATNGDLRSALNGLELAVMSTPTDESNHVHVTLEIIEECIQKKALTH 232

Query: 256 DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR 315
           DK G    D      +   F     G +T +A        +  +    +++ G +     
Sbjct: 233 DKDGDAHYD------VISAFQKSIRGSDTNAA--------LHYMAR--LLEAGDLISVM- 275

Query: 316 GRLLMPIAWQHLGIDIP 332
            R L+ IA++ +G+  P
Sbjct: 276 -RRLLTIAYEDIGLANP 291


>gi|309799324|ref|ZP_07693570.1| chromosome segregation helicase [Streptococcus infantis SK1302]
 gi|308117064|gb|EFO54494.1| chromosome segregation helicase [Streptococcus infantis SK1302]
          Length = 429

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 72/326 (22%), Positives = 120/326 (36%), Gaps = 42/326 (12%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            D     +RP+T+++  GQ       K+     +A    L  ++  GPPG+GKT++A  +
Sbjct: 8   PDNLALRMRPKTIDQVIGQEHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAI 65

Query: 75  ARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           A      FR+ +  V +K      A         VL +DEIHRL    ++ L P +E   
Sbjct: 66  AGTTKYAFRTFNATVDSKKRLQEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGL 125

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + ++    E P         SR  +              QD  G         I+   T 
Sbjct: 126 VIMIGATTENPFFSVTPAIRSRVQIFELEPLSN------QDVKGA--------IQIALTD 171

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI--TREIADAA 249
            +RG     + + D+A   IA  + G  R A   L                 T +I + +
Sbjct: 172 PERGFD-FPVELDDDALDFIATSTNGDLRSAFNSLDLAVLSTPENDDGIRHITLDIMENS 230

Query: 250 LLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           L R    +DK G    D+  L+ + ++  G  V              ++       +I+ 
Sbjct: 231 LQRSYITMDKDGDGHYDV--LSALQKSIRGSDVDA------------SLHYAAR--LIEA 274

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
           G +      R L  IA++ +G+  P 
Sbjct: 275 GDLP--SLARRLTVIAYEDIGLANPE 298


>gi|326473927|gb|EGD97936.1| AAA family ATPase [Trichophyton tonsurans CBS 112818]
          Length = 551

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 76/347 (21%), Positives = 126/347 (36%), Gaps = 70/347 (20%)

Query: 6   GLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSN--LKVFIEAAKARAEALDHVLFVGP 62
            + S N  Q+ A +   +RPRTL+E  GQ     N  L+  IE      + +  ++  G 
Sbjct: 129 RVKSSNALQKSAPLAERMRPRTLDEMCGQELVGENGVLRGLIE-----RDRVPSMILWGS 183

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIH 115
            G GKTTLA+V+A  +G  F   +    +   +   L    +        + ++F DEIH
Sbjct: 184 AGTGKTTLARVIASMVGSRFVEINS-TSSGVAECKKLFAEAKNELSLTGRKTIIFCDEIH 242

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R S   +++    +E  Q+ L+    E PS +     LSR                    
Sbjct: 243 RFSKSQQDVFLGPVESGQVTLIGATTENPSFKVQNALLSRCRTFTL-------------- 288

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAV------TDEAACEIAMRSRGTPRIAGRLLR 227
                       E++  I+ R  ++ G          DE    +A  + G  R A  LL 
Sbjct: 289 -------AKLTEENICAILNRALRVEGPNYSPSALVDDELIKYLAAFADGDARTALNLLE 341

Query: 228 RVRDFAEVAHAKTITREIADAALLRL-AIDKMGFDQLDLRYLTMIARNFGGGPVGIETIS 286
              D ++    + +T++    +L R    D+ G    D                   TIS
Sbjct: 342 LAMDLSQ---RENMTKDELKKSLTRTLVYDRAGDQHYD-------------------TIS 379

Query: 287 AGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
           A     R +  D    Y+ +       P    R L+ +A + +G+  
Sbjct: 380 AFHKSIRGSDPDASLYYLARMIQSGEDPLYIARRLIVVASEDVGLAD 426


>gi|225559886|gb|EEH08168.1| DNA replication ATPase [Ajellomyces capsulatus G186AR]
 gi|225559936|gb|EEH08218.1| DNA replication ATPase [Ajellomyces capsulatus G186AR]
          Length = 547

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 72/343 (20%), Positives = 120/343 (34%), Gaps = 69/343 (20%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEAC--SNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           S  +         +RPR+L++  GQ        L+  IE      + +  ++  G  G G
Sbjct: 122 SNALENAAPLAERMRPRSLDDVYGQELVGPSGVLRGLIE-----QDRVPSMILWGGAGTG 176

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSI 119
           KTT+A+V+A+ +G  F   +    +   +   L +  +        + ++F DEIHR S 
Sbjct: 177 KTTIARVIAKMVGSRFVEINS-TNSGVAECKKLFSEAKNELSLSGRKTIIFCDEIHRFSK 235

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             +++    +E  Q+ L+    E PS +     LSR                        
Sbjct: 236 SQQDVFLGPVESGQITLIGATTENPSFKVQNALLSRCRTFTL------------------ 277

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAV------TDEAACEIAMRSRGTPRIAGRLLRRVRD 231
                   ED+ +I+ R  K+ G          DE    +A  + G  R +  LL    D
Sbjct: 278 ---AKLTDEDIVSILNRALKVEGPNYSPSPLVDDELIKYLAAFADGDARTSLNLLELAMD 334

Query: 232 FAEVAHAKTITREIADAALLRL-AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
            +       +TRE    +L R    D+ G    D                   TISA   
Sbjct: 335 LSRREG---MTREDLKKSLTRTLVYDRAGDQHYD-------------------TISAFHK 372

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
             R    D    Y+ +       P    R L+ +A + +G+  
Sbjct: 373 SIRGNDPDASLYYLARMIQSGEDPLYIARRLIVVASEDIGLAD 415


>gi|169794256|ref|YP_001712049.1| recombination factor protein RarA [Acinetobacter baumannii AYE]
 gi|213158747|ref|YP_002321168.1| ATPase, AAA family [Acinetobacter baumannii AB0057]
 gi|215481814|ref|YP_002323996.1| ATPase family associated with various cellular activities (AAA)
           family protein [Acinetobacter baumannii AB307-0294]
 gi|301345879|ref|ZP_07226620.1| recombination factor protein RarA [Acinetobacter baumannii AB056]
 gi|301509947|ref|ZP_07235184.1| recombination factor protein RarA [Acinetobacter baumannii AB058]
 gi|301594525|ref|ZP_07239533.1| recombination factor protein RarA [Acinetobacter baumannii AB059]
 gi|332850334|ref|ZP_08432668.1| recombination factor protein RarA [Acinetobacter baumannii 6013150]
 gi|332871558|ref|ZP_08440052.1| recombination factor protein RarA [Acinetobacter baumannii 6013113]
 gi|169147183|emb|CAM85042.1| putative ATPase [Acinetobacter baumannii AYE]
 gi|213057907|gb|ACJ42809.1| ATPase, AAA family [Acinetobacter baumannii AB0057]
 gi|213987786|gb|ACJ58085.1| ATPase family associated with various cellular activities (AAA)
           family protein [Acinetobacter baumannii AB307-0294]
 gi|332730792|gb|EGJ62102.1| recombination factor protein RarA [Acinetobacter baumannii 6013150]
 gi|332731412|gb|EGJ62704.1| recombination factor protein RarA [Acinetobacter baumannii 6013113]
          Length = 421

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 75/328 (22%), Positives = 118/328 (35%), Gaps = 59/328 (17%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
             LRPR L E  GQ           +        L  ++F GPPG+GKTT+A ++A+ + 
Sbjct: 10  ERLRPRDLSEIIGQDHLLGEHAPLRQMIDQGH--LPSIIFWGPPGVGKTTIALLLAQAID 67

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
             F S S  +     +L  ++    D    V+FIDEIHR +   ++ L  A+E  ++ L+
Sbjct: 68  RPFVSLSA-LNTGVKELREVIAESGDLLTPVVFIDEIHRFNKSQQDALLGAVEKGKITLI 126

Query: 138 --VGEGPSARSVKINLSRFTLIAATTRVGL-----LTNPLQ-DRFGIPIRLNFYEIEDLK 189
               E PS       LSR  +    +         L N LQ D+F   ++  +  IE+  
Sbjct: 127 GATTENPSFEVNSALLSRCQVYTLNSLDSEAIQMLLNNALQNDKF---LKERYIHIEEYD 183

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            ++Q  A                       R A  LL  +    E     TI   +    
Sbjct: 184 ALLQFAAG--------------------DARKALNLLDLIASTFEPEVENTINNAVVVKV 223

Query: 250 LLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
             +     DK G    DL                   +SA +   R +  D    +M + 
Sbjct: 224 AQQNIARYDKSGEQHYDL-------------------VSAFIKSIRGSDPDAALYWMARM 264

Query: 308 GFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                 P    R ++  A + +G   P+
Sbjct: 265 LKGGEDPVFIARRMLIAASEDIGNSNPN 292


>gi|114771241|ref|ZP_01448661.1| ATPase, AAA family protein [alpha proteobacterium HTCC2255]
 gi|114548166|gb|EAU51053.1| ATPase, AAA family protein [alpha proteobacterium HTCC2255]
          Length = 438

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 69/346 (19%), Positives = 126/346 (36%), Gaps = 64/346 (18%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHV 57
           + D++   S++           RP  + +  GQ +   +   L + +E+       L  +
Sbjct: 4   LFDQDAPPSKHAGN-RPLADRCRPTKITDVIGQQKLIGSDGSLTIMLESG-----NLPSI 57

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFI 111
           +F GPPG+GKTT+A+++A E+ ++F   S  + +   DL       + R       +LF+
Sbjct: 58  IFWGPPGVGKTTIARLLASEVNMHFVQMSA-IYSGVSDLKKQFEAAKIRHLNGKSTLLFV 116

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DEIHR +   ++   P +E+  + L+    E PS       LSR  ++            
Sbjct: 117 DEIHRFNKSQQDGFLPFIENGTIVLVGATTENPSFELNSALLSRAQVM------------ 164

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVT-DEAACEIA-MRSRGTPRIAGRLLR 227
           L +R             DL+ I QR  +     +  D  A E+    + G  R    L+ 
Sbjct: 165 LLER---------LSFSDLELITQRAEREMKTPLPLDGEARELLFEMADGDGRSLLNLIE 215

Query: 228 RVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISA 287
           ++ ++      K+               DK G                         ISA
Sbjct: 216 QIFNWGAEMLNKSQLSSRLSK--RAAQYDKNGDAH-------------------FNIISA 254

Query: 288 GLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
                R +  D    ++ +       PR   R +  +A + +G+  
Sbjct: 255 LHKSVRGSDPDAALYWLARMLEGGEDPRYIARRITRMAIEDIGLAD 300


>gi|308177513|ref|YP_003916919.1| replication-associated recombination protein A [Arthrobacter
           arilaitensis Re117]
 gi|307744976|emb|CBT75948.1| replication-associated recombination protein A [Arthrobacter
           arilaitensis Re117]
          Length = 468

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 82/345 (23%), Positives = 129/345 (37%), Gaps = 43/345 (12%)

Query: 3   DREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALD---HVL 58
           D        V++    ++  +RP++L+E  GQ           + A+     L     V+
Sbjct: 11  DPREAREPQVNRPRPPLAVRMRPKSLDELVGQQHLLGPGSPLRQLAENPETGLAGPASVI 70

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFI 111
             GPPG+GKTT+A V+AR     F   S  + A   D+  ++   +D         VLF+
Sbjct: 71  LYGPPGIGKTTIAHVIARATDRKFVELSA-ITAGVKDVRRVIEQAKDDRDLRGVTTVLFL 129

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DEIHR +   ++ L P +E+  + L+    E PS   +            +  + L   P
Sbjct: 130 DEIHRFNKAQQDALLPGVENRVVVLVAATTENPSFSVISP--------LLSRSLLLTLRP 181

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           L D              DL T+++R A        D+   E   R     R+A    RR 
Sbjct: 182 LTDG-------------DLSTLLER-AVSDERGFNDQVILEEEQR-DAIVRLAQGDARRS 226

Query: 230 RDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGL 289
               E A A       A  A       ++  D + L     + R    G    + ISA +
Sbjct: 227 LTVLEAAGAVAWNAAGAGVAPPV----QITADHVQLAMDQAVQRYDKDGDQHYDIISAFI 282

Query: 290 SEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
              R +  D    Y+ +       PR   R LM  A + +G+  P
Sbjct: 283 KSIRGSDVDAALHYLARMLSAGEDPRFIARRLMISASEDIGMADP 327


>gi|311069237|ref|YP_003974160.1| recombination factor protein RarA [Bacillus atrophaeus 1942]
 gi|310869754|gb|ADP33229.1| recombination factor protein RarA [Bacillus atrophaeus 1942]
          Length = 422

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 67/320 (20%), Positives = 119/320 (37%), Gaps = 41/320 (12%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            +RP  +E+  GQ       K+     +A+   L  ++  GPPG+GKT++A  +A    +
Sbjct: 7   RMRPTKIEDIIGQQHLVGKDKIIGRMVQAKH--LSSMILYGPPGIGKTSIATAIAGSTSI 64

Query: 81  NFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137
            FR  +  +  K   ++ A    +  + +L +DE+HRL    ++ L P +E+  + L+  
Sbjct: 65  AFRKLNAVINNKKDMEIVAQEAKMSGQVILILDEVHRLDKGKQDFLLPYLENGMIILIGA 124

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
               P         SR  +         L     +R                     G  
Sbjct: 125 TTANPYHAINPAIRSRTQIFELEPLTPELIKQAMER--------------ALQDEHHGLG 170

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT--REIADAALLR--L 253
              ++V D+A    A    G  R A   L       + +   TI      A+  L +   
Sbjct: 171 SYNVSVDDQAMDHFAHGCGGDVRSALNALELAVLSTKESSDGTIHISLATAEECLQKKSF 230

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
           A DK G    D+  L+   ++  G            S+   A+  L    +I+ G ++  
Sbjct: 231 AHDKDGDAHYDV--LSAFQKSIRG------------SDANAALHYLAR--LIEAGDLESI 274

Query: 314 PRGRLLMPIAWQHLGIDIPH 333
              R L+ IA++ +G+  P 
Sbjct: 275 --ARRLLVIAYEDIGLASPQ 292


>gi|297562029|ref|YP_003681003.1| ATPase AAA [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
 gi|296846477|gb|ADH68497.1| AAA ATPase central domain protein [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 456

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 81/333 (24%), Positives = 126/333 (37%), Gaps = 53/333 (15%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           ++     +RPRTL+E  GQ              +   +A   V   GPPG GKTTLA VV
Sbjct: 26  QEPLAVRMRPRTLDEVVGQRHLLGEGSPLRRLVE--DDAPMSVFLWGPPGTGKTTLATVV 83

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYP 127
           +R     F   S  V A   D+ A++ +          R +LF+DE+HR +   ++ L P
Sbjct: 84  SRVTKRRFVELSA-VNAGVKDVRAVIDDARRRMGMHGTRTLLFVDEVHRFNKTQQDALLP 142

Query: 128 AMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           A+E+  +  +    E P    V   LSR  L++  +        L DR            
Sbjct: 143 AVENRWVSFIGATTENPFFSVVSPLLSRSLLLSLESLEDADVRALVDR------------ 190

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK--TITR 243
                  +RG       ++DE A  +   + G  R +   L      A    A+  TIT 
Sbjct: 191 ---ALADERGLDG-RYTLSDEGADHLVRLAGGDGRRSLTYLEAAALVAGAPGAEPVTITA 246

Query: 244 EIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           E  + A+ R A   D+ G    D+                   +SA +   R +  D   
Sbjct: 247 EHVERAVDRHAVRYDRSGDQHYDV-------------------VSAFIKSMRGSDPDAAL 287

Query: 302 PYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
            Y+ +       PR   R ++  A + +G+  P
Sbjct: 288 HYLARMIEAGEDPRFIARRVVVHASEDVGMADP 320


>gi|118466446|ref|YP_882617.1| recombination factor protein RarA [Mycobacterium avium 104]
 gi|118167733|gb|ABK68630.1| ATP/GTP-binding protein [Mycobacterium avium 104]
          Length = 446

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 75/326 (23%), Positives = 128/326 (39%), Gaps = 61/326 (18%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            +RP +L+E  GQ    +         +    A    +  GPPG GKTTLA ++++  G 
Sbjct: 30  RMRPASLDEVVGQDHLLAPGSPLRRLVEGSGVA--SAILYGPPGSGKTTLAALISQATGR 87

Query: 81  NFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
            F + S  + A   D+ A++ +        ++ VLFIDE+HR S   ++ L  A+E+  +
Sbjct: 88  RFEALSA-LSAGVKDVRAVIESARTALLRGEQTVLFIDEVHRFSKTQQDALLSAVENRVV 146

Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            L+    E PS   V   LSR                      + ++L     +D++T+V
Sbjct: 147 LLVAATTENPSFSVVAPLLSR---------------------SLILQLRPLSADDIRTVV 185

Query: 193 QRGAKL-----TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           +R           + V  EA   +   + G  R A   L    +  E    +T+ + + +
Sbjct: 186 RRAIDDPRGLGGRVPVAPEAVDLLVRLAAGDARRALTALEVAAEAGESVTVQTVEQSLDE 245

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           AA   +  D+ G    D+                   ISA +   R +  D    Y+ + 
Sbjct: 246 AA---VRYDRDGDQHYDV-------------------ISAFIKSVRGSDVDAALHYLARM 283

Query: 308 GFIQRTPR--GRLLMPIAWQHLGIDI 331
                 PR   R LM +A + +G+  
Sbjct: 284 LVAGEDPRFIARRLMILASEDIGMAD 309


>gi|325089916|gb|EGC43226.1| DNA replication ATPase [Ajellomyces capsulatus H88]
          Length = 547

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 72/343 (20%), Positives = 120/343 (34%), Gaps = 69/343 (20%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEAC--SNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           S  +         +RPR+L++  GQ        L+  IE      + +  ++  G  G G
Sbjct: 122 SNALENAAPLAERMRPRSLDDVYGQELVGPSGVLRGLIE-----QDRVPSMILWGGAGTG 176

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSI 119
           KTT+A+V+A+ +G  F   +    +   +   L +  +        + ++F DEIHR S 
Sbjct: 177 KTTIARVIAKMVGSRFVEINS-TNSGVAECKKLFSEAKNELSLSGRKTIIFCDEIHRFSK 235

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             +++    +E  Q+ L+    E PS +     LSR                        
Sbjct: 236 SQQDVFLGPVESGQITLIGATTENPSFKVQNALLSRCRTFTL------------------ 277

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAV------TDEAACEIAMRSRGTPRIAGRLLRRVRD 231
                   ED+ +I+ R  K+ G          DE    +A  + G  R +  LL    D
Sbjct: 278 ---AKLTDEDIVSILNRALKVEGPNYSPSPLVDDELIKYLAAFADGDARTSLNLLELAMD 334

Query: 232 FAEVAHAKTITREIADAALLRL-AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
            +       +TRE    +L R    D+ G    D                   TISA   
Sbjct: 335 LSRREG---MTREDLKKSLTRTLVYDRAGDQHYD-------------------TISAFHK 372

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
             R    D    Y+ +       P    R L+ +A + +G+  
Sbjct: 373 SIRGNDPDASLYYLARMIQSGEDPLYIARRLIVVASEDIGLAD 415


>gi|295100781|emb|CBK98326.1| Recombination protein MgsA [Faecalibacterium prausnitzii L2-6]
          Length = 424

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 75/330 (22%), Positives = 128/330 (38%), Gaps = 48/330 (14%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            +     LRP+TL +  GQ    +  +VF    +  +  + +++F GP G GKTT+A+++
Sbjct: 2   NEPLAQRLRPKTLADVCGQQHLLAEGQVFRRTIE--SGRIPNMIFYGPSGTGKTTVARII 59

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLE-----DRDVLFIDEIHRLSIIVEEILYPAM 129
           A   G+     +G      GD+ A+L ++         +L++DEI  L+   ++ L   +
Sbjct: 60  AENSGMTLHKLNG-TSCGTGDIKAVLKDIGTLAGAGGILLYLDEIQYLNKKQQQSLLECI 118

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ED  + L+    E P        LSR T+    +    L+    +R          E E 
Sbjct: 119 EDGSVTLIASTTENPYFYIYNALLSRCTVFEFKS----LSAADVERGIRNALKKLSESES 174

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT-ITREIA 246
                        + + ++A   +A  + G  R A   L  V   A V      IT E+ 
Sbjct: 175 Q-----------PVVMDEDACAYLAESAGGDLRKALGCLDFVVTAAPVDGTGKHITLEMI 223

Query: 247 DAALLR--LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
                R  +  D+ G D  D      I   +     G        S+P  A+  L    +
Sbjct: 224 QQVTRRTAMRYDRDGDDHYD------IVSAYQKSMRG--------SDPNAALHYLAR--L 267

Query: 305 IQQGFIQRTPRG-RLLMPIAWQHLGIDIPH 333
           ++ G +   P   R LM  A + +G+  P 
Sbjct: 268 LEAGDL---PSACRRLMVCACEDVGLAYPQ 294


>gi|227549178|ref|ZP_03979227.1| crossover junction endodeoxyribonuclease ATPase [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227078738|gb|EEI16701.1| crossover junction endodeoxyribonuclease ATPase [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 449

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 72/331 (21%), Positives = 123/331 (37%), Gaps = 48/331 (14%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           V +     + +RP++L +  GQ       K      +    A   V+  GPPG GKTT+A
Sbjct: 25  VGESAPLAARMRPQSLSDVVGQDHVLGEGKPLRRLVEGSGAA--SVILYGPPGTGKTTIA 82

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEIL 125
            ++A  +G NF   S  + +   D+  ++          ++ VLFIDE+HR S   ++ L
Sbjct: 83  SLIASTMGQNFVGLSA-LSSGVKDVREVIAQARRDLTRGEKTVLFIDEVHRFSKTQQDAL 141

Query: 126 YPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
             A+E+  + L+    E PS   V   LSR  L+   +        + DR  +       
Sbjct: 142 LAAVENRTVLLVAATTENPSFSVVAPLLSRSLLLQLRSLEPEDIGDVIDRAMVD------ 195

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
                    +RG       +   A  ++ + + G  R A   L    +  +   A T+  
Sbjct: 196 ---------ERGVGG-DKTLEPAAREQLVLLAGGDARRALTYLEAAAEAVDDNGAITVEV 245

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
              +     +  D+ G    D+                   ISA +   R +  D    Y
Sbjct: 246 VRDNVNRAIVRYDRDGDQHYDV-------------------ISAFIKSIRGSDVDAALHY 286

Query: 304 MIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           + +       PR   R L+  A + +G+  P
Sbjct: 287 LARMIEAGEDPRFIARRLVIHASEDIGMADP 317


>gi|312384050|gb|EFR28872.1| hypothetical protein AND_02653 [Anopheles darlingi]
          Length = 580

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 69/343 (20%), Positives = 119/343 (34%), Gaps = 44/343 (12%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
                     +RP  +E++ GQ +      +  +     + ++  ++  GPPG GKTTLA
Sbjct: 152 ADSNKPLAERVRPDNIEDYVGQEQVMGRNAILRK--LFDSGSIPSMILWGPPGCGKTTLA 209

Query: 72  QVVARELGVNFRST----SGPVIAKAGDLAALLT------NLEDRDVLFIDEIHRLSIIV 121
            ++A     N  S          A   D+   +         + R +LF+DEIHR + + 
Sbjct: 210 HIIANRCKQNSNSMRFVSLSATSAGVNDVKEAVKVAKNESRFKRRTILFLDEIHRFNKLQ 269

Query: 122 EEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           ++I  P +E   + L+    E PS       LSR  +I            +  R     R
Sbjct: 270 QDIFLPHVESGTITLIGATTENPSFSLNSALLSRCRVIVLEKHSVESMMSILVRALPQYR 329

Query: 180 LNFYEIEDLKTIVQRGAKLTGLA--VTDEAACEIAMRSRGTPRIAGRLLR-----RVRDF 232
                  D   I   G      +  +++E    +A    G  RI    L+      V   
Sbjct: 330 AKLITDCDNNNIPNYGKSPLEPSLLISEETVRWLAETCDGDARIGLNSLQLALSVNVPTS 389

Query: 233 AEVAHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
            + A  K I+ E     L +     D+ G    DL                   ISA   
Sbjct: 390 QDAAPPKIISLEDVREGLKKSHLLYDRKGDQHYDL-------------------ISALHK 430

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
             R + ++    ++ +       PR   R ++ +A + +G+  
Sbjct: 431 SIRASDDNAALYWVTRMIMSGEDPRYVCRRMIRMASEDIGMAD 473


>gi|146319767|ref|YP_001199479.1| recombination factor protein RarA [Streptococcus suis 05ZYH33]
 gi|146321966|ref|YP_001201677.1| recombination factor protein RarA [Streptococcus suis 98HAH33]
 gi|253752751|ref|YP_003025892.1| ATPase [Streptococcus suis SC84]
 gi|253754576|ref|YP_003027717.1| ATPase [Streptococcus suis P1/7]
 gi|145690573|gb|ABP91079.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [Streptococcus suis 05ZYH33]
 gi|145692772|gb|ABP93277.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [Streptococcus suis 98HAH33]
 gi|251817040|emb|CAZ52692.1| putative ATPase [Streptococcus suis SC84]
 gi|251820822|emb|CAR47588.1| putative ATPase [Streptococcus suis P1/7]
 gi|292559374|gb|ADE32375.1| putative ATPase [Streptococcus suis GZ1]
 gi|319759169|gb|ADV71111.1| recombination factor protein RarA [Streptococcus suis JS14]
          Length = 428

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 61/320 (19%), Positives = 113/320 (35%), Gaps = 42/320 (13%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            +RP++++E  GQ       K+      A    L  ++  GPPG+GKT++A  +A     
Sbjct: 8   RMRPKSIDEVIGQEHLVGPGKIIRRMIDA--NMLSSMILYGPPGIGKTSIASAIAGTTKY 65

Query: 81  NFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137
            FR+ +     +      A         VL +DEIHRL+   ++ L P +E+  + ++  
Sbjct: 66  AFRTFNATTDNQKRLQEIAEEAKFSGGLVLLLDEIHRLNKTKQDFLLPLLENGNIIMIGA 125

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
             E P    +    SR  +                            +E   T  +RG  
Sbjct: 126 TTENPFFSILPAIRSRVQIFELQPLQTSHIRQ--------------ALELALTDSERGFD 171

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI--TREIADAALLRLA- 254
              + +  EA   +A  + G  R A   L       +     +     +  + +L +   
Sbjct: 172 -FPITIEPEALDFLANATNGDLRAAYNSLELAVLSTKECDDGSRYIDLDAVENSLQKSYI 230

Query: 255 -IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +DK G    D   L+ + ++  G  V              ++       +I+   +   
Sbjct: 231 SMDKNGDAHYD--ILSALQKSIRGSDV------------NASLHYAAR--LIEAEDLP-- 272

Query: 314 PRGRLLMPIAWQHLGIDIPH 333
              R L  IA++ +G+  P 
Sbjct: 273 SLARRLTVIAYEDIGLANPE 292


>gi|297198342|ref|ZP_06915739.1| recombination factor protein RarA [Streptomyces sviceus ATCC 29083]
 gi|197714396|gb|EDY58430.1| recombination factor protein RarA [Streptomyces sviceus ATCC 29083]
          Length = 451

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 85/358 (23%), Positives = 131/358 (36%), Gaps = 66/358 (18%)

Query: 2   MDREGLLSRNVSQEDADIS------LLRPRTLEEFTGQVEAC---SNLKVFIEAAKARAE 52
           M+ +   +    +++ D +       +RPRTL+E  GQ       S L+  +        
Sbjct: 1   MEPDLFTAAAEERQEKDPAGSPLAVRMRPRTLDEVVGQQHLLKPGSPLRRLVGEGSGGPA 60

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------ED 105
               V+  GPPG GKTTLA VV++     F   S  + A   ++ A++            
Sbjct: 61  GPSSVILWGPPGTGKTTLAYVVSKATNKRFVELSA-ITAGVKEVRAVIEGARRATGGFGK 119

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRV 163
             VLF+DEIHR S   ++ L PA+E+  + L+    E P    +   LSR  L+      
Sbjct: 120 ETVLFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYFSIISPLLSRSLLLTLEPLT 179

Query: 164 -----GLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT-GLAVTDEAACEIAMRSRG 217
                GLL   L D  G+   +     ED +  + R A      A+T   A   A   +G
Sbjct: 180 DDDVRGLLKRALSDERGLKDAVAL--PEDTEDHLLRIAGGDARRALTALEAAAGAALDKG 237

Query: 218 TPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGG 277
            P I    L    D A V                    D+ G    D+   + + ++  G
Sbjct: 238 EPEITLTTLEETVDRAAVK------------------YDRDGDQHYDVA--SALIKSIRG 277

Query: 278 GPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
             V                 D    Y+ +       PR   R LM  A + +G+  P+
Sbjct: 278 SDV-----------------DAALHYLARMIEAGEDPRFIARRLMISASEDIGLADPN 318


>gi|304407556|ref|ZP_07389208.1| AAA ATPase central domain protein [Paenibacillus curdlanolyticus
           YK9]
 gi|304343507|gb|EFM09349.1| AAA ATPase central domain protein [Paenibacillus curdlanolyticus
           YK9]
          Length = 438

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 66/287 (22%), Positives = 108/287 (37%), Gaps = 30/287 (10%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD          +       +RP TL+++ GQ       K+   A +   + +  +L  G
Sbjct: 1   MDLFSYGEEQTPRARLLADRMRPETLDDYIGQEHIVGAGKLLRRAIE--GDRISSILLYG 58

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEI 114
           PPG GKTTLA ++++    +F   +  V A   D+  ++   +        + +LF+DE+
Sbjct: 59  PPGCGKTTLAHIISKRTEADFVKLNA-VDASVKDVRDVIDRAKTAKAMYGRKTILFLDEV 117

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++ L PA+E   +  +    E P        LSR TL            PL  
Sbjct: 118 HRFNSSRQDALLPAVEQGIIIFIGATTENPFHYVNGALLSRSTLFQL--------QPLTK 169

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR--RVR 230
                  +             RG     L V  EA   IA  + G  R A   L    V 
Sbjct: 170 EHAREAMVRAL------ADASRGLGFMRLEVEAEALDHIAQTAGGDIRRALNALELAAVT 223

Query: 231 DFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGG 277
             +E   +  IT E+A  ++ +         Q D+  L+   ++  G
Sbjct: 224 TPSEPDGSVRITLEVAQESVRKPTAKADESTQYDV--LSAFHKSVRG 268


>gi|297243480|ref|ZP_06927412.1| helicase subunit of the Holliday junction resolvase-like ATPase
           [Gardnerella vaginalis AMD]
 gi|296888525|gb|EFH27265.1| helicase subunit of the Holliday junction resolvase-like ATPase
           [Gardnerella vaginalis AMD]
          Length = 455

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 85/363 (23%), Positives = 135/363 (37%), Gaps = 72/363 (19%)

Query: 2   MDREGLLSRNVSQE--DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAE----ALD 55
           M+++   + +   +        +RP ++E+  GQ+ A          A  ++     A  
Sbjct: 1   MEQDLFAASSAPSDVTRPLAVRMRPSSIEDVLGQLHALKEGSPLRRLANPQSRGSLTAPS 60

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DV 108
            V+  GPPG+GKTTLA +VAR+ G  F   S  V +   D+ A+L    +R        V
Sbjct: 61  SVVLFGPPGVGKTTLAYIVARQSGRVFEELSA-VTSGVKDVRAVLDRAHERLVSNGQETV 119

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLL 166
           LFIDE+HR S   ++ L P++E+  +  +    E PS   +K  LSR  ++   +     
Sbjct: 120 LFIDEVHRFSKSQQDALLPSVENRDVTFIGATTENPSFSIIKPLLSRSVVVKLES----- 174

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK-----LTGLAVTDEAACEIAMRSRGTPRI 221
                             +EDL T+++R           L + D+A   I   S G  R 
Sbjct: 175 ----------------LSVEDLHTLIERALTGENGLNNQLKIDDDAIDSIIRLSGGDARK 218

Query: 222 AGRLLRRVR-----DFAEVAHAK----TITREIADAALLRLAIDKMGFDQLDLRYLTMIA 272
              +L         D A     K    T            +  DK G D  D+       
Sbjct: 219 TLTILEAAAGAVTGDVALQHGKKKPVITADIVSNVMDTTTVRYDKDGDDHYDV------- 271

Query: 273 RNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGID 330
                       ISA +   R +  D    Y+ +       PR   R +M  A + +G+ 
Sbjct: 272 ------------ISAFIKSMRGSDVDASLHYLARMLRAGEDPRFIARRIMIAAAEEVGMA 319

Query: 331 IPH 333
            P 
Sbjct: 320 APQ 322


>gi|154248687|ref|YP_001419645.1| recombination factor protein RarA [Xanthobacter autotrophicus Py2]
 gi|154162772|gb|ABS69988.1| AAA ATPase central domain protein [Xanthobacter autotrophicus Py2]
          Length = 436

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 71/347 (20%), Positives = 117/347 (33%), Gaps = 59/347 (17%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D                  LRP  L E  GQ        V     + R+  L  ++  
Sbjct: 1   MADLFEAAGLGSDVPRPLADRLRPAKLSEVVGQDHLVGPDGVLTRMLETRS--LGSLILW 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEI 114
           GPPG GKTT+A+++A    ++F   S  + +   DL  +      R       +LF+DEI
Sbjct: 59  GPPGTGKTTVARLLASATDLHFEQISA-IFSGVADLKKVFEQARARRLVGKATLLFVDEI 117

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++   P MED  + L+    E PS       LSR  ++   +           
Sbjct: 118 HRFNRAQQDSFLPVMEDGTVTLVGATTENPSFELNAALLSRARVLVFKS----------- 166

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTG--LAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
                      + + +  ++ R  ++ G  L +T++A   +   + G  R +  L   V 
Sbjct: 167 ----------LDADAIARLLTRAEEVEGKALPLTEDARFALLNMADGDGRASLTLAEEVW 216

Query: 231 DFAEVAHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAG 288
             A     +          + R A   DK      +L                   ISA 
Sbjct: 217 RAA--RPGEVFDVAALADVVQRRAPIYDKSEDGHYNL-------------------ISAL 255

Query: 289 LSEPRDAIEDLIEPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
               R +  D    Y  +       P    R ++ +A + +G   P 
Sbjct: 256 HKAVRGSDPDAALYYFARMLDAGEAPLFLARRIVRMAVEDIGNADPQ 302


>gi|62390516|ref|YP_225918.1| recombination factor protein RarA [Corynebacterium glutamicum ATCC
           13032]
 gi|145295755|ref|YP_001138576.1| recombination factor protein RarA [Corynebacterium glutamicum R]
 gi|41325853|emb|CAF21642.1| Uncharacterized ATPase related to the helicase subunit of the
           Holliday junction resolvase [Corynebacterium glutamicum
           ATCC 13032]
 gi|140845675|dbj|BAF54674.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 472

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 73/331 (22%), Positives = 124/331 (37%), Gaps = 58/331 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RPRTL+E  GQ       +      +   +A   V+  GPPG GKTT+A +++ 
Sbjct: 52  PLAARMRPRTLDEVVGQQHLLGEGRPLRRLIEGSGDA--SVILYGPPGTGKTTIASLISA 109

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLT------NLEDRDVLFIDEIHRLSIIVEEILYPAME 130
             G  F + S  + +   ++ A++        L  R VLFIDE+HR S   ++ L  A+E
Sbjct: 110 AAGDRFVAMSA-LSSGVKEVRAVIERARMDLQLGQRTVLFIDEVHRFSKTQQDALLSAVE 168

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAA-----TTRVGLLTNPLQDRFGIPIRLNFY 183
           +  + L+    E PS   V   LSR  L+            +L   L+D  G+       
Sbjct: 169 NRTVLLVAATTENPSFSVVSPLLSRSLLLQLESLSDEDIKTVLNKALEDERGLAG----- 223

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
                            +  TDEA  ++ + + G  R     +    +  E      I  
Sbjct: 224 ----------------RITATDEAVDQLVLLAGGDARRGLTYIEAAAEAVEDGGVLDIDT 267

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
            +A+     +  D+ G    D+                   +SA +   R +  D    Y
Sbjct: 268 VMANVNRAVVRYDRDGDQHYDV-------------------VSAWIKSIRGSDVDAALHY 308

Query: 304 MIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           + +       PR   R L+  + + +G+  P
Sbjct: 309 LARMIDAGEDPRFIARRLVVHSSEDIGMADP 339


>gi|88803489|ref|ZP_01119014.1| putative AAA family ATPase protein [Polaribacter irgensii 23-P]
 gi|88780501|gb|EAR11681.1| putative AAA family ATPase protein [Polaribacter irgensii 23-P]
          Length = 423

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 63/331 (19%), Positives = 119/331 (35%), Gaps = 54/331 (16%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            +     +RP+TLE++  Q        +  +  K     +  ++  GPPG+GKTTLA ++
Sbjct: 2   NEPLAERIRPKTLEDYVSQQHLVGENGILTKLIKQ--GIIPSLILWGPPGIGKTTLANII 59

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLE--------DRDVLFIDEIHRLSIIVEEILY 126
           A      F + S  + +   D+  ++   +           +LFIDEIHR S   ++ L 
Sbjct: 60  ATTSNRPFYTLSA-ISSGVKDVRDVIEKAKKSGGLFTAKNPILFIDEIHRFSKSQQDSLL 118

Query: 127 PAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
            A+E   + L+    E PS   +   LSR  +    +                     ++
Sbjct: 119 GAVEKGWVTLIGATTENPSFEVIPALLSRCQIYILNS---------------------FD 157

Query: 185 IEDLKTIVQRGAKLTG-LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            E+L  ++ R  +    L+       E     + +   A +LL        V     IT 
Sbjct: 158 KEELIALLHRAMEKDAFLSSKKIILKETEALLQVSGGDARKLLNIFELLVSVDDEVVITN 217

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           E+  +                 +     AR    GP   + +SA +   R +  +    +
Sbjct: 218 ELVLS-----------------KIQKNTARYDKSGPQHYDIVSAFIKSIRGSDPNAAVYW 260

Query: 304 MIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           + +        +   R ++ +A + +G   P
Sbjct: 261 LARMIEGGEDVKFIARRMLILASEDIGNANP 291


>gi|154757528|gb|AAI51634.1| WRNIP1 protein [Bos taurus]
          Length = 545

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 72/349 (20%), Positives = 131/349 (37%), Gaps = 41/349 (11%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLG 66
           R + +       +RP  L++F GQ  A      L+  +EA++     +  ++  GPPG G
Sbjct: 99  RQLLEGKPLADTMRPDALQDFVGQGRAVGPETLLRSLLEASE-----VPSLILWGPPGCG 153

Query: 67  KTTLAQVVARELGVNFRST--SGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRL 117
           KTTLA ++A     +           AK  D+  ++   +        + +LFIDEIHR 
Sbjct: 154 KTTLAHIIANNSKKHSIRFVTLSATSAKTTDVRDVIKQAQNEKRFFKRKTILFIDEIHRF 213

Query: 118 SIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAA-----TTRVGLLTNPL 170
           +   ++   P +E   + L+    E PS +     LSR  +I          V +L   +
Sbjct: 214 NKSQQDTFLPHVECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAVVTILMRAV 273

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
               GI +  +    + L       +  + + + D+A   +A  S G  R     L+   
Sbjct: 274 NS-LGIQVLDSSRPADPLSHGSN-SSSESSVLIEDKAVDTLAHLSDGDARAGLNGLQLAV 331

Query: 231 DFAEVAHAKTITRE-----IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETI 285
             A ++  KT  ++          L+  +  K G  +  + Y      ++         I
Sbjct: 332 -LARLSARKTFGKKGGQSYPPSRVLVTESDVKEGLQRSHILYDRAGEEHYNC-------I 383

Query: 286 SAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           SA     R +       ++ +       P    R L+  A + +G+  P
Sbjct: 384 SALHKSMRGSDSSAALYWLGRMLEGGEDPLYVARRLVRFASEDVGLADP 432


>gi|125622982|ref|YP_001031465.1| recombination factor protein RarA [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|124491790|emb|CAL96710.1| chromosome segregation helicase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|300069723|gb|ADJ59123.1| recombination factor protein RarA [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 419

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 69/321 (21%), Positives = 124/321 (38%), Gaps = 45/321 (14%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +RPR ++E  GQ       K+     + +   L  ++  GPPG+GKT++A  +A  +
Sbjct: 6   ARRMRPRNIDEIVGQRHLVGKGKIIRRMVETQ--LLSSMILYGPPGIGKTSIASAIAGTM 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
            + FR+ +     K   L  + +  E   + VL +DEIHRL    ++ L P +E+ Q+ L
Sbjct: 64  NIAFRTFNATTDTKKR-LQEIASEAEFSGQLVLLLDEIHRLDKPKQDFLLPLLENGQIIL 122

Query: 137 M--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           +    E P    V    SR  +            P    F + + L            +R
Sbjct: 123 IGATTENPYFSVVPAIRSRVQIFELKAL-----EPEDLEFAVNLSLQ---------DKER 168

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
           G     + + D+A   +   + G  R     L      +   +   +T +  + +L R A
Sbjct: 169 GFD-FDVTIEDDALYFLVHSTNGDLRSTFNALELAVLSS---NEHRVTLDDMENSLQRKA 224

Query: 255 --IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
              DK G    D   L+ + ++  G  V              ++       +I+ G +Q 
Sbjct: 225 ATFDKDGDAHYD--LLSALQKSIRGSDV------------NASLHYAAR--LIEGGDLQ- 267

Query: 313 TPRGRLLMPIAWQHLGIDIPH 333
               R L  +A++ +G+  P 
Sbjct: 268 -SLARRLTVMAYEDIGLANPD 287


>gi|253756509|ref|YP_003029649.1| ATPase [Streptococcus suis BM407]
 gi|251818973|emb|CAZ56820.1| putative ATPase [Streptococcus suis BM407]
          Length = 428

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 61/320 (19%), Positives = 113/320 (35%), Gaps = 42/320 (13%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            +RP++++E  GQ       K+      A    L  ++  GPPG+GKT++A  +A     
Sbjct: 8   RMRPKSIDEVIGQEHLVGPGKIIRRMIDA--NMLSSMILYGPPGIGKTSIASAIAGTTKY 65

Query: 81  NFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137
            FR+ +     +      A         VL +DEIHRL+   ++ L P +E+  + ++  
Sbjct: 66  AFRTFNATTDNQKRLQEIAEEAKFSGGLVLLLDEIHRLNKTKQDFLLPLLENGNIIMIGA 125

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
             E P    +    SR  +                            +E   T  +RG  
Sbjct: 126 TTENPFFSILPAIRSRVQIFELQPLQTSHIRQ--------------ALELALTDSERGFD 171

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI--TREIADAALLRLA- 254
              + +  EA   +A  + G  R A   L       +     +     +  + +L +   
Sbjct: 172 -FPITIEPEALDFLANATNGDLRAAYNSLELAVLSTKECDDGSRHIDLDAVENSLQKSYI 230

Query: 255 -IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +DK G    D   L+ + ++  G  V              ++       +I+   +   
Sbjct: 231 SMDKNGDAHYD--ILSALQKSIRGSDV------------NASLHYAAR--LIEAEDLP-- 272

Query: 314 PRGRLLMPIAWQHLGIDIPH 333
              R L  IA++ +G+  P 
Sbjct: 273 SLARRLTVIAYEDIGLANPE 292


>gi|240276219|gb|EER39731.1| DNA replication ATPase [Ajellomyces capsulatus H143]
          Length = 547

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 72/343 (20%), Positives = 120/343 (34%), Gaps = 69/343 (20%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEAC--SNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           S  +         +RPR+L++  GQ        L+  IE      + +  ++  G  G G
Sbjct: 122 SNALENAAPLAERMRPRSLDDVYGQELVGPSGVLRGLIE-----QDRVPSMILWGGAGTG 176

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSI 119
           KTT+A+V+A+ +G  F   +    +   +   L +  +        + ++F DEIHR S 
Sbjct: 177 KTTIARVIAKMVGSRFVEINS-TNSGVAECKKLFSEAKNELSLSGRKTIIFCDEIHRFSK 235

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             +++    +E  Q+ L+    E PS +     LSR                        
Sbjct: 236 SQQDVFLGPVESGQITLIGATTENPSFKVQNALLSRCRTFTL------------------ 277

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAV------TDEAACEIAMRSRGTPRIAGRLLRRVRD 231
                   ED+ +I+ R  K+ G          DE    +A  + G  R +  LL    D
Sbjct: 278 ---AKLTDEDIVSILNRALKVEGPNYSPSPLVDDELIKYLAAFADGDARTSLNLLELAMD 334

Query: 232 FAEVAHAKTITREIADAALLRL-AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
            +       +TRE    +L R    D+ G    D                   TISA   
Sbjct: 335 LSRREG---MTREDLKKSLTRTLVYDRAGDQHYD-------------------TISAFHK 372

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
             R    D    Y+ +       P    R L+ +A + +G+  
Sbjct: 373 SIRGNDPDASLYYLARMIQSGEDPLYIARRLIVVASEDIGLAD 415


>gi|222152405|ref|YP_002561580.1| recombination factor protein RarA [Streptococcus uberis 0140J]
 gi|222113216|emb|CAR40703.1| putative ATPase [Streptococcus uberis 0140J]
          Length = 422

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 71/326 (21%), Positives = 117/326 (35%), Gaps = 42/326 (12%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            D     +RPRT+ E  GQ       K+      A    L  ++  GPPG+GKT++A  V
Sbjct: 2   PDNLALRMRPRTISEVIGQEHLVGEGKIIRRMVDA--NMLSSMILYGPPGIGKTSIASAV 59

Query: 75  ARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           A      FR+ +    +K      A         VL +DEIHRL    ++ L P +E+  
Sbjct: 60  AGTTQYAFRTFNATTDSKKRLQEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGN 119

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + ++    E P         SR  +            PL +            I      
Sbjct: 120 IIMIGATTENPFFSVTPAIRSRVQIFEL--------EPLSNEAIKKA------IATAIKD 165

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK--TITREIADAA 249
            +RG     + +  +A   IA  + G  R A   L       +   A    IT +  + +
Sbjct: 166 KERGYN-FPIELDQDALDFIATATNGDLRSAYNSLDLAVMSTQANEAGLRHITLDTVENS 224

Query: 250 LLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           L R    +DK G    D+  L+ + ++  G  V              ++       +++ 
Sbjct: 225 LQRSYITMDKNGDGHYDV--LSALQKSIRGSDV------------NASLHYAAR--LVEA 268

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
           G +      R L  IA++ +G+  P 
Sbjct: 269 GDLP--SLARRLTVIAYEDIGLANPD 292


>gi|147677387|ref|YP_001211602.1| recombination factor protein RarA [Pelotomaculum thermopropionicum
           SI]
 gi|146273484|dbj|BAF59233.1| ATPase [Pelotomaculum thermopropionicum SI]
          Length = 440

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 79/340 (23%), Positives = 130/340 (38%), Gaps = 44/340 (12%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           E  + +N++      + +RPRTL+EF  Q        +     +   + +   +F GPPG
Sbjct: 5   EQAMKKNLAMAAPLATRMRPRTLDEFEEQHGVAGPGTLLRRLIEE--DNISSAIFFGPPG 62

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRL 117
            GKTTLA ++A     +F + +  V+A  GD+  ++    +R        +LFIDEIHR 
Sbjct: 63  TGKTTLASIIAGMTRAHFETINA-VMAGVGDIKRVVEESRERLALYNQKTILFIDEIHRF 121

Query: 118 SIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
           +   ++ L P +E+ Q+ ++    E P     +  LSR  L            PL D   
Sbjct: 122 NRTQQDALLPFVENGQIIMIGSTTENPMFAVSRPLLSRSQLYRF--------EPLSDEAV 173

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
             I       E      +RG       V  EA   +A  + G  R A   L      A  
Sbjct: 174 RRILTRALLDE------ERGLAGYRAEVAGEALDHLAAVANGDARAALNALELAV-LATP 226

Query: 236 AHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDA 295
                I R    AA   +    + +D+ D  Y               + ISA +   R +
Sbjct: 227 PGEDGIRRISLAAAEEAVQKRVLKYDRTDEHY---------------DVISAFIKSMRGS 271

Query: 296 IEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                  ++ +  +    P    R +M  A + +G+  P+
Sbjct: 272 DPHATLYWLARMIYAGEDPEFICRRIMIHAAEDVGLADPN 311


>gi|327295304|ref|XP_003232347.1| AAA family ATPase [Trichophyton rubrum CBS 118892]
 gi|326465519|gb|EGD90972.1| AAA family ATPase [Trichophyton rubrum CBS 118892]
          Length = 550

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 76/347 (21%), Positives = 126/347 (36%), Gaps = 70/347 (20%)

Query: 6   GLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSN--LKVFIEAAKARAEALDHVLFVGP 62
            + S N  Q+ A +   +RPRTL+E  GQ     N  L+  IE      + +  ++  G 
Sbjct: 128 RVKSSNALQKSAPLAERMRPRTLDEMCGQELVGENGVLRGLIE-----RDRVPSMILWGS 182

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIH 115
            G GKTTLA+V+A  +G  F   +    +   +   L    +        + ++F DEIH
Sbjct: 183 AGTGKTTLARVIASMVGSRFVEINS-TSSGVAECKKLFAEAKNELSLTGRKTIIFCDEIH 241

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R S   +++    +E  Q+ L+    E PS +     LSR                    
Sbjct: 242 RFSKSQQDVFLGPVESGQVTLIGATTENPSFKVQNALLSRCRTFTL-------------- 287

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAV------TDEAACEIAMRSRGTPRIAGRLLR 227
                       E++  I+ R  ++ G          DE    +A  + G  R A  LL 
Sbjct: 288 -------AKLTEENICAILNRALRVEGPNYSPSALVDDELIRYLAAFADGDARTALNLLE 340

Query: 228 RVRDFAEVAHAKTITREIADAALLRL-AIDKMGFDQLDLRYLTMIARNFGGGPVGIETIS 286
              D ++  +   +T++    +L R    D+ G    D                   TIS
Sbjct: 341 LAMDLSQREN---MTKDELKKSLTRTLVYDRAGDQHYD-------------------TIS 378

Query: 287 AGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
           A     R +  D    Y+ +       P    R L+ +A + +G+  
Sbjct: 379 AFHKSIRGSDPDASLYYLARMIQSGEDPLYIARRLIVVASEDVGLAD 425


>gi|223934153|ref|ZP_03626095.1| AAA ATPase central domain protein [Streptococcus suis 89/1591]
 gi|330833714|ref|YP_004402539.1| AAA ATPase central domain-containing protein [Streptococcus suis
           ST3]
 gi|223897175|gb|EEF63594.1| AAA ATPase central domain protein [Streptococcus suis 89/1591]
 gi|329307937|gb|AEB82353.1| AAA ATPase central domain protein [Streptococcus suis ST3]
          Length = 428

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 61/320 (19%), Positives = 114/320 (35%), Gaps = 42/320 (13%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            +RP++++E  GQ       K+      A    L  ++  GPPG+GKT++A  +A     
Sbjct: 8   RMRPKSIDEVIGQEHLVGPGKIIRRMIDA--NMLSSMILYGPPGIGKTSIASAIAGTTKY 65

Query: 81  NFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137
            FR+ +     +      A         VL +DEIHRL+   ++ L P +E+  + ++  
Sbjct: 66  AFRTFNATTDNQKRLQEIAEEAKFSGGLVLMLDEIHRLNKTKQDFLLPLLENGNIIMIGA 125

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
             E P    +    SR  +                            +E   T  +RG  
Sbjct: 126 TTENPFFSILPAIRSRVQIFELQPLKTSHIRQ--------------ALELALTDSERGFD 171

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI--TREIADAALLRLA- 254
              + +  EA   +A  + G  R A   L       + +   +     +  + +L +   
Sbjct: 172 -FPVTIEPEALDFLANATNGDLRAAYNSLELAVLSTKESDDGSRHIDLDAVENSLQKSYI 230

Query: 255 -IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +DK G    D   L+ + ++  G  V              ++       +I+   +   
Sbjct: 231 SMDKNGDAHYD--ILSALQKSIRGSDV------------NASLHYAAR--LIEAEDLP-- 272

Query: 314 PRGRLLMPIAWQHLGIDIPH 333
              R L  IA++ +G+  P 
Sbjct: 273 SLARRLTVIAYEDIGLANPE 292


>gi|115380346|ref|ZP_01467349.1| AAA ATPase, central region [Stigmatella aurantiaca DW4/3-1]
 gi|115362645|gb|EAU61877.1| AAA ATPase, central region [Stigmatella aurantiaca DW4/3-1]
          Length = 284

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 118/296 (39%), Gaps = 47/296 (15%)

Query: 2   MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD      +   +  A +   +RP TL +F GQ       +      +   + +  ++  
Sbjct: 1   MDLFEHAGQKDQEAQAPLAERMRPSTLADFAGQEHLTGEGRFLRRVIEQ--DQVPSLILW 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDE 113
           GPPG GKTTLA+V+A+  G +F S S  V++   D+   +   +        R +LFIDE
Sbjct: 59  GPPGTGKTTLARVIAQATGASFESLSA-VLSGVKDIRETVARAQERWRLHRQRTLLFIDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++ L P +E   + L+    E PS       LSR  ++              
Sbjct: 118 IHRFNKSQQDALLPHVEKGTVTLIGATTENPSFEVNAALLSRARVVTL------------ 165

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKL-----TGLAVTDEAACEIAMRSRGTPRIAGRLL 226
                       E E+L  +++R           + V DEA   IA  + G  R A   L
Sbjct: 166 ---------RGLEEEELVGVLRRAVVAPKGLGGKVQVDDEALQFIAQAAGGDARKALTAL 216

Query: 227 RRVRDFAEVAHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPV 280
                 A       + R+ A+ AL + A   DK G +  ++  ++   ++  G  V
Sbjct: 217 E----VAASYGGSQVNRQAAEEALQQKALLYDKGGEEHYNV--VSAFIKSMRGSDV 266


>gi|303229442|ref|ZP_07316232.1| recombination factor protein RarA [Veillonella atypica
           ACS-134-V-Col7a]
 gi|303230800|ref|ZP_07317547.1| recombination factor protein RarA [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302514560|gb|EFL56555.1| recombination factor protein RarA [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302515978|gb|EFL57930.1| recombination factor protein RarA [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 434

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 76/325 (23%), Positives = 123/325 (37%), Gaps = 51/325 (15%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            +RP  L+   GQ +A           +   + +  +LF GP G GKTTLA ++A+ +  
Sbjct: 19  RMRPTELDHLYGQEQAVGKGTFLRAMVEK--DTIPSMLFYGPCGTGKTTLAGIIAK-MSN 75

Query: 81  NFRSTSGPVIAKAGDLAALL-------TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +         A  G+L  ++        +L+ R +LF+DEIHR +   +++L P +ED  
Sbjct: 76  SHFVNLNATNAGIGELRNIIEDARKRVRSLQQRTILFLDEIHRFNKSQQDVLLPCVEDGT 135

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + L+    E P     +  LSR  LI          + +  R                T 
Sbjct: 136 IILIGATTENPFFEVNRPLLSRLRLITLEALTPKAISQILKR--------------ALTD 181

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
            + G     L V DE   +I +   G  R+A  +L +    A V   + IT EI +  + 
Sbjct: 182 SEVGLGARNLQVKDELLEDIGIFVNGDGRMALNILEQAA--AMVHDGEEITLEILEKVVG 239

Query: 252 R--LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           R     DK G    D                   TISA +   R +       Y+ +   
Sbjct: 240 RRIYTYDKKGDSHYD-------------------TISAFIKSMRGSDVQATLHYLARMIE 280

Query: 310 IQRTPR--GRLLMPIAWQHLGIDIP 332
               P    R ++  A + +G+  P
Sbjct: 281 AGEDPNFIARRIVICAAEDVGLADP 305


>gi|300781083|ref|ZP_07090937.1| AAA family ATPase [Corynebacterium genitalium ATCC 33030]
 gi|300532790|gb|EFK53851.1| AAA family ATPase [Corynebacterium genitalium ATCC 33030]
          Length = 448

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 79/328 (24%), Positives = 125/328 (38%), Gaps = 54/328 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RPRTL+E  GQ       +      +   EA   V+  GPPG GKTT+A ++A 
Sbjct: 32  PLAARMRPRTLDELVGQDHLLGEGRPLRRLVEGSGEA--SVILYGPPGTGKTTIASLIAA 89

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAME 130
            +G NF   S  + +    +  +L           R VLFIDE+HR S   ++ L  A+E
Sbjct: 90  AMGQNFVGLSA-LSSGVKQVREVLDGARRNLARGQRTVLFIDEVHRFSKTQQDALLAAVE 148

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +  + L+    E PS   V   LSR  L+   +        + DR               
Sbjct: 149 NRTVLLVAATTENPSFSVVAPLLSRSLLLRLESLSDADIASVVDR--------------- 193

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
               +RG     + +  EA  ++   + G  R A   L    + A      TIT ++   
Sbjct: 194 AVSSERGLNG-SVTLEPEAREQLVTLAGGDARRALTYLEAAAEGA----DGTITADVVSR 248

Query: 249 ALLR--LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           ++ R  +  D+ G    D+                   ISA +   R +  D    Y+ +
Sbjct: 249 SVDRAVVRYDRDGDQHYDV-------------------ISAFIKSIRGSDVDAALHYLAR 289

Query: 307 QGFIQRTPR--GRLLMPIAWQHLGIDIP 332
                  PR   R L+  A + +G+  P
Sbjct: 290 MIEAGEDPRFIARRLVIHASEDIGMADP 317


>gi|86741903|ref|YP_482303.1| recombination factor protein RarA [Frankia sp. CcI3]
 gi|86568765|gb|ABD12574.1| Recombination protein MgsA [Frankia sp. CcI3]
          Length = 519

 Score =  136 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 86/348 (24%), Positives = 126/348 (36%), Gaps = 49/348 (14%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
             V +     + LRPRTL+E  GQ              +    A   V+  GPPG GKTT
Sbjct: 45  PGVDRAAPLAARLRPRTLDEVVGQRHLLGPGSPLRRLVE--GGATTSVVLWGPPGTGKTT 102

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVE 122
           LA +V+R  G  FR  S  V A   D+ A++    +       R VLFIDE+HR +   +
Sbjct: 103 LAHIVSRATGRRFRELSA-VTAGVKDVRAVIDEARETLSTSGARTVLFIDEVHRFTRTQQ 161

Query: 123 EILYPAMEDFQLDLM--VGEGPSARSVKINLSRFT-----LIAATTRVGLLTNPLQDRFG 175
           + L P++E   + L+    E P    V   LSR        +      G+LT  L+D  G
Sbjct: 162 DALLPSVERGWVTLVAATTENPFFSVVSPLLSRSLLLTLEPLTDDDIRGVLTRALRDPRG 221

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
                                    L+V+DEA   +   + G  R A   L    +    
Sbjct: 222 YDG---------------------RLSVSDEAREHVVRLAGGDARRALTTLEAGAEALLE 260

Query: 236 AHAKTITREIADAALLRLAID---------KMGFDQLDLRYLTMIARNFGGGPVGIETIS 286
           AH           A      D         ++  D L+        R    G    + IS
Sbjct: 261 AHECESGPGGKAGAGADAGADAEAFVNPRPRLDLDLLERAVNRAAVRYDRSGDQHYDVIS 320

Query: 287 AGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           A +   R    D    Y+ +       PR   R ++ +A + +G+  P
Sbjct: 321 AFIKSMRGGDVDAALHYLARMLEAGEDPRFVARRMIILASEDIGMADP 368


>gi|326480926|gb|EGE04936.1| AAA family ATPase [Trichophyton equinum CBS 127.97]
          Length = 551

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 76/347 (21%), Positives = 126/347 (36%), Gaps = 70/347 (20%)

Query: 6   GLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSN--LKVFIEAAKARAEALDHVLFVGP 62
            + S N  Q+ A +   +RPRTL+E  GQ     N  L+  IE      + +  ++  G 
Sbjct: 129 RVKSSNALQKSAPLAERMRPRTLDEMCGQELVGENGVLRGLIE-----RDRVPSMILWGS 183

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIH 115
            G GKTTLA+V+A  +G  F   +    +   +   L    +        + ++F DEIH
Sbjct: 184 AGTGKTTLARVIASMVGSRFVEINS-TSSGVAECKKLFAEAKNELSLTGRKTIIFCDEIH 242

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R S   +++    +E  Q+ L+    E PS +     LSR                    
Sbjct: 243 RFSKSQQDVFLGPVESGQVTLIGATTENPSFKVQNALLSRCRTFTL-------------- 288

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAV------TDEAACEIAMRSRGTPRIAGRLLR 227
                       E++  I+ R  ++ G          DE    +A  + G  R A  LL 
Sbjct: 289 -------AKLTEENICAILNRALRVEGPNYSPSALVDDELIKYLAAFADGDARTALNLLE 341

Query: 228 RVRDFAEVAHAKTITREIADAALLRL-AIDKMGFDQLDLRYLTMIARNFGGGPVGIETIS 286
              D ++  +   +T++    +L R    D+ G    D                   TIS
Sbjct: 342 LAMDLSQREN---MTKDELKKSLTRTLVYDRAGDQHYD-------------------TIS 379

Query: 287 AGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
           A     R +  D    Y+ +       P    R L+ +A + +G+  
Sbjct: 380 AFHKSIRGSDPDASLYYLARMIQSGEDPLYIARRLIVVASEDVGLAD 426


>gi|116510915|ref|YP_808131.1| recombination factor protein RarA [Lactococcus lactis subsp.
           cremoris SK11]
 gi|116106569|gb|ABJ71709.1| Recombination protein MgsA [Lactococcus lactis subsp. cremoris
           SK11]
          Length = 419

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 67/321 (20%), Positives = 124/321 (38%), Gaps = 45/321 (14%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +RPR ++E  GQ       K+     + +   L  ++  GPPG+GKT++A  +A  +
Sbjct: 6   ARRMRPRNIDEIVGQRHLVGKGKIIRRMVETQ--LLSSMILYGPPGIGKTSIASAIAGTM 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
            + FR+ +     K   L  + +  E   + VL +DEIHRL    ++ L P +E+ Q+ L
Sbjct: 64  NIAFRTFNATTDTKKR-LQEIASEAEFSGQLVLLLDEIHRLDKPKQDFLLPLLENGQIIL 122

Query: 137 M--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           +    E P    V    SR  +             L+    + ++             +R
Sbjct: 123 IGATTENPYFSVVPAIRSRVQIFELKALEP---EDLESAVNLSLQDK-----------ER 168

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
           G     + + D+A   +   + G  R     L      +   +   +T +  + +L R A
Sbjct: 169 GFD-FDVTIDDDALYFLVHSTNGDLRSTFNALELAVLSS---NEHRVTLDDMENSLQRKA 224

Query: 255 --IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
              DK G    D   L+ + ++  G  V              ++       +I+ G +Q 
Sbjct: 225 ATFDKDGDAHYD--LLSALQKSIRGSDV------------NASLHYAAR--LIEGGDLQ- 267

Query: 313 TPRGRLLMPIAWQHLGIDIPH 333
               R L  +A++ +G+  P 
Sbjct: 268 -SLARRLTVMAYEDIGLANPD 287


>gi|194017275|ref|ZP_03055887.1| crossover junction endodeoxyribonuclease ATPase [Bacillus pumilus
           ATCC 7061]
 gi|194011143|gb|EDW20713.1| crossover junction endodeoxyribonuclease ATPase [Bacillus pumilus
           ATCC 7061]
          Length = 421

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 71/323 (21%), Positives = 131/323 (40%), Gaps = 39/323 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP  +E+  GQ       ++     +A+   L  ++  GPPG+GKT++A  +A 
Sbjct: 3   PLAYRMRPSHIEDIIGQEHLVGEGQIIKRMVEAKH--LSSMILYGPPGIGKTSIATAIAG 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
              + FR+ +  VI    D+ A+    +   + +L +DE+HRL    ++ L P +E+  +
Sbjct: 61  STSIAFRTLNA-VIHNKKDMEAVAAEAKMSGQVILILDEVHRLDKGKQDFLLPYLENGMI 119

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
            +++G   +     IN +    I + T++  L  PL+            + E       R
Sbjct: 120 -ILIGATTANPYHVINPA----IRSRTQIFEL-KPLETEQIKAALTRALQDEH------R 167

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT--ITREIADAALLR 252
           G     + V DEA    +    G  R A   L       +   A    IT   A+  L +
Sbjct: 168 GLGGYEVTVDDEAMNHFSNGCGGDVRSALNALELAVLSTKADDAGHIMITLAAAEECLQK 227

Query: 253 --LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
              + DK G    D+  L+   ++  G            S+   A+  L    +I+ G +
Sbjct: 228 KSFSHDKNGDAHYDV--LSAFQKSIRG------------SDADAALHYLAR--LIEAGDL 271

Query: 311 QRTPRGRLLMPIAWQHLGIDIPH 333
           +     R L+ +A++ +G+  P 
Sbjct: 272 ESIS--RRLLVMAYEDIGLASPQ 292


>gi|257068799|ref|YP_003155054.1| Recombination protein MgsA [Brachybacterium faecium DSM 4810]
 gi|256559617|gb|ACU85464.1| Recombination protein MgsA [Brachybacterium faecium DSM 4810]
          Length = 461

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 82/342 (23%), Positives = 126/342 (36%), Gaps = 53/342 (15%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQV---EACSNLKVFIEAAKARAEALDHVLFVGPP 63
           L  RN          +RPRTL+E  GQ    E  S L+  + +   R  A   V+  GPP
Sbjct: 18  LSDRNRDHRAPLAVRMRPRTLDEVVGQHAALEPGSPLRRLVSSDDTR-TAPASVILWGPP 76

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHR 116
           G GKTTLA VVA+     F   S  V+A   D+  ++     R        VLF+DE+HR
Sbjct: 77  GTGKTTLAYVVAQSGDREFVEISA-VLAGVKDIREVVDQARSRLRTVGRETVLFVDEVHR 135

Query: 117 LSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRF 174
            S   ++ L P++E+  + L+    E P    +   LSR  ++   +      + L DR 
Sbjct: 136 FSKSQQDALLPSVENRWVTLVAATTENPYFSVISPLLSRSIVLTLESLEQEDLDALVDR- 194

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
                             +RG     + + D+A   +     G  R     L      A 
Sbjct: 195 --------------ALEDERGLDG-AVTLADDAREALLRLGGGDARKILTSLEAAAAAAL 239

Query: 235 VAHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEP 292
           +  +  I       A+ R A   D+ G    D+                    SA +   
Sbjct: 240 MKDSPEIDAATLSQAVNRAAVRYDRAGDQHYDV-------------------TSAFIKSM 280

Query: 293 RDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           R +  D    Y+ +       PR   R ++  A + +G+  P
Sbjct: 281 RGSDVDASLHYLARMIEAGEDPRFIARRVVIAAGEEVGMADP 322


>gi|312862465|ref|ZP_07722708.1| ATPase, AAA family [Streptococcus vestibularis F0396]
 gi|322515850|ref|ZP_08068794.1| crossover junction endodeoxyribonuclease [Streptococcus
           vestibularis ATCC 49124]
 gi|311102108|gb|EFQ60308.1| ATPase, AAA family [Streptococcus vestibularis F0396]
 gi|322125736|gb|EFX97058.1| crossover junction endodeoxyribonuclease [Streptococcus
           vestibularis ATCC 49124]
          Length = 422

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 72/326 (22%), Positives = 122/326 (37%), Gaps = 42/326 (12%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            D     +RPRT+ E  GQ       K+     +A    L  ++  GPPG+GKT++A  +
Sbjct: 2   PDNLALRMRPRTISEVIGQKHLVGEGKIICRMVEA--NMLSSMILYGPPGIGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           A      FR+ +  V +K      A         VL +DEIHRL    ++ L P +E+  
Sbjct: 60  AGTTKFAFRTFNATVDSKKRLQEIAEEAKFSGSLVLLLDEIHRLDKAKQDFLLPLLENGN 119

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + ++    E P         SR  +            PL +       L   E +     
Sbjct: 120 IIMIGATTENPFFSVTPAIRSRVQIFEL--------EPLSNEDIKEAILGVLEDK----- 166

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF--AEVAHAKTITREIADAA 249
            +RG     + + ++A   IA  + G  R A   L        A     + IT +  + +
Sbjct: 167 -ERGFD-FDVQLDEDALDFIATATNGDLRSAYNSLDLAVMSTPASEDGFRHITLDTVENS 224

Query: 250 LLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           L R    +DK G    D+  L+ + ++  G  V              ++       +++ 
Sbjct: 225 LQRSYITMDKDGDGHYDV--LSALQKSIRGSDV------------NASLHYAAR--LVEA 268

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
           G +      R L  IA++ +G+  P 
Sbjct: 269 GDLP--SLARRLTVIAYEDIGLANPD 292


>gi|261367566|ref|ZP_05980449.1| ATPase, AAA family [Subdoligranulum variabile DSM 15176]
 gi|282570353|gb|EFB75888.1| ATPase, AAA family [Subdoligranulum variabile DSM 15176]
          Length = 420

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 74/329 (22%), Positives = 124/329 (37%), Gaps = 48/329 (14%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +     LRPRTL+E  GQ       +VF    +  +  + +++F GP G+GKTT+A ++A
Sbjct: 2   EPLAQRLRPRTLDEVCGQQHLLGKNQVFRRTVE--SGRIPNMIFYGPSGVGKTTVASIIA 59

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLE-----DRDVLFIDEIHRLSIIVEEILYPAME 130
              G+     +G   A   D+ ++L ++         +L++DEI   +   ++ L   +E
Sbjct: 60  AGSGMQLHKLNG-TTASTSDIKSVLADIGTLGASGGILLYLDEIQYFNKRQQQSLLECVE 118

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
              + L+    E P        LSR T+    +           R GI         ED 
Sbjct: 119 QGTVTLIASTTENPYFYVYNALLSRCTVFEFKSLTAEDI-----RKGIQNAAARLGAEDK 173

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA-EVAHAKTITREIAD 247
             I+          + D+A   +A  + G  R A   L      A      +T+T ++  
Sbjct: 174 VPIL----------IPDDALDYLAQSAGGDMRKALGNLEFAVTAAPAENGQRTVTLDMVQ 223

Query: 248 --AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
             AA   +  DK+G D  D+                   +SA     R +  D    Y+ 
Sbjct: 224 QVAARTAMRYDKLGDDHYDI-------------------VSAYQKSMRGSDPDAALHYLA 264

Query: 306 QQGFIQRTPRG-RLLMPIAWQHLGIDIPH 333
           +       P   R LM  A + +G+  P 
Sbjct: 265 RLLEAGDLPSACRRLMVCACEDVGLAWPQ 293


>gi|325847794|ref|ZP_08170016.1| ATPase, AAA family [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325480812|gb|EGC83865.1| ATPase, AAA family [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 443

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 71/348 (20%), Positives = 130/348 (37%), Gaps = 56/348 (16%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD   L  +   ++ A ++  +RP  +E+F GQ       K+     K  ++ +   +F 
Sbjct: 1   MDLFELNRQRQLEKSAPLADRMRPENIEDFLGQDHLLGEGKIIRRMIK--SDRIYSSIFY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDE 113
           GPPG+GKTTLA+++++   + F   S  V +   DL   +   +D       + +LFIDE
Sbjct: 59  GPPGVGKTTLAKIISKSTNMAFEKVSA-VASGISDLKKKIEIAKDNLKYENKKTILFIDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++ L P +ED  + L+    E P     K  +SR  +               
Sbjct: 118 IHRFNKSQQDYLLPFVEDSTIILIGATTENPYFEVNKALISRMYVFELKA---------- 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
                      +  EDL  ++        +        +   R     + +    R + +
Sbjct: 168 -----------HTNEDLHKLIDMALTKDKVLQNKNIKIDKDAR-NTLVKFSNGDCRALLN 215

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLR-YLTMIARNF----GGGPVGIETIS 286
             E+A              +    DK G  ++D +  L  I +        G    +TIS
Sbjct: 216 ALEIA--------------IFSQEDKEGIIEVDRQSILNSIQKKISIYDRNGDRHYDTIS 261

Query: 287 AGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           A +   R +  D    Y+ +        +   R ++  A + + +  P
Sbjct: 262 AFIKSMRGSDPDAAIFYLAKMLNSGEDIKFIARRMIIFASEDISLADP 309


>gi|329889161|ref|ZP_08267504.1| ATPase family associated with various cellular activities AAA
           family protein [Brevundimonas diminuta ATCC 11568]
 gi|328844462|gb|EGF94026.1| ATPase family associated with various cellular activities AAA
           family protein [Brevundimonas diminuta ATCC 11568]
          Length = 434

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 69/342 (20%), Positives = 118/342 (34%), Gaps = 53/342 (15%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M D     +  +   DA ++  LRP+ L++  GQ              +A    L  ++ 
Sbjct: 1   MTDLFE--ASGIHPPDAPLADRLRPQALDQVVGQDHLLGEGGPIRRMIEA--GRLGSMIL 56

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEI 114
            GPPG GKTT+A+++A+  G  ++S S        + KA + A +      + +LF+DEI
Sbjct: 57  WGPPGTGKTTIARLLAKAAGYEYQSISAVFSGVADLKKAFEAARMRRAAGQQTLLFVDEI 116

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++   P +E+  + L+    E PS       LSR  +           + L D
Sbjct: 117 HRFNRAQQDGFLPFVEEGIVTLVGATTENPSFELNGALLSRSQVYVLKRLDDASLDLLLD 176

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R                           L +T EA   +   + G  R    +   + D 
Sbjct: 177 R-------------------AEALMGKLLPLTPEARQAMLALADGDGRYLLTMSEVLFDL 217

Query: 233 AEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEP 292
            +V                  A DK   +  +L                   ISA     
Sbjct: 218 TDVEPLDVQALAGVLQ-KRAPAYDKSREEHYNL-------------------ISALHKSV 257

Query: 293 RDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           R +  D    ++ +       P    R ++ +A + +G   P
Sbjct: 258 RGSDPDAALYWLARMLNGGEDPLYLARRIVRMAVEDIGQADP 299


>gi|320594099|gb|EFX06502.1| aaa family ATPase [Grosmannia clavigera kw1407]
          Length = 645

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 73/345 (21%), Positives = 120/345 (34%), Gaps = 54/345 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEAC--SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
                +RP+ L++  GQ        L+  IEA     + +  ++  G  G GKTT+A+ +
Sbjct: 201 PLAERMRPQDLDDVFGQELVGPNGVLRALIEA-----DRVPSMILWGGSGTGKTTIARCI 255

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYP 127
           A+++G  F   +        +   L  +          + +LF DEIHR +   +++   
Sbjct: 256 AQQVGSRFVEMNATNSGGISECKKLFQDASNELALTGRKTILFCDEIHRFTKAQQDVFLK 315

Query: 128 AMEDFQLDLM--VGEGPSARSVKINLSRFT-----LIAATTRVGLLTNPLQDRFGIPIRL 180
            +E   + L+    E PS R V   LSR        +A      +L   +    GIP   
Sbjct: 316 PVEAGTITLIGATTENPSFRIVTALLSRCRTFTLAPLATEDVRCILERAVLQETGIPASD 375

Query: 181 NFYEIEDLKTIVQRGAKL---TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
           N     +   I +   KL       +  E    +A  + G  R A  LL      A    
Sbjct: 376 NNQGSPNETDISEETKKLTFALSPLIDRELLGYLAAFADGDARAALNLLELAMSIAARPR 435

Query: 238 A--------KTITREIADAALLRL-AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAG 288
                       T+E   +AL +    D+ G    D                   TISA 
Sbjct: 436 EVDKNTGKITLCTKEDLKSALTKTLVYDRAGDQHYD-------------------TISAF 476

Query: 289 LSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
               R +  D    Y+ +       P    R ++ IA + +G+  
Sbjct: 477 HKSVRGSDPDATLYYLARMLQSGEDPLFIARRMVVIASEDVGLAD 521


>gi|299768300|ref|YP_003730326.1| recombination factor protein RarA [Acinetobacter sp. DR1]
 gi|298698388|gb|ADI88953.1| recombination factor protein RarA [Acinetobacter sp. DR1]
          Length = 421

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 75/328 (22%), Positives = 119/328 (36%), Gaps = 59/328 (17%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
             LRPR L E  GQ           +        L  ++F GPPG+GKTT+A ++A+ + 
Sbjct: 10  ERLRPRDLSEIIGQDHLLGEHAPLRQMIDQGH--LPSIIFWGPPGVGKTTIALLLAQAID 67

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
             F S S  +     +L  ++    D    V+FIDEIHR +   ++ L  A+E  ++ L+
Sbjct: 68  RPFVSLSA-LNTGVKELREVIAESGDLLTPVVFIDEIHRFNKSQQDALLGAVEKGKITLI 126

Query: 138 --VGEGPSARSVKINLSRFTLIAATTRVGL-----LTNPLQ-DRFGIPIRLNFYEIEDLK 189
               E PS       LSR  +    +         L N LQ D+F   ++  +  +E+  
Sbjct: 127 GATTENPSFEVNSALLSRCQVYTLNSLDSEAIQTLLNNALQADKF---LKERYIHVEEYD 183

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            ++Q  A                       R A  LL  +    E     TIT  +    
Sbjct: 184 ALIQFAAG--------------------DARKALNLLDLIASTFEPEIENTITNAVVVKV 223

Query: 250 LLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
             +     DK G    DL                   +SA +   R +  D    +M + 
Sbjct: 224 AQQNIARYDKSGEQHYDL-------------------VSAFIKSIRGSDPDATLYWMARM 264

Query: 308 GFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                 P    R ++  A + +G   P+
Sbjct: 265 LKGGEDPVFIARRMLIAASEDIGNSNPN 292


>gi|307299313|ref|ZP_07579114.1| AAA ATPase central domain protein [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306915109|gb|EFN45495.1| AAA ATPase central domain protein [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 437

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 72/329 (21%), Positives = 122/329 (37%), Gaps = 49/329 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP+  ++  GQ       K  I  A    + L  ++  GPPG GKTT+ +++  
Sbjct: 10  PLSERLRPKEFDDIVGQEHLTGK-KGIIRGAVDSGK-LFSMILYGPPGTGKTTIGEIIRS 67

Query: 77  ELGVNFR-STSGPVIAKAGDLAA------LLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           +LG ++        +    DL         L  +  + VLF+DEIHRL+   +++  P  
Sbjct: 68  KLGNDYHFEFFSASLQGTADLKKHFAHGERLKRVGQQLVLFVDEIHRLNKSQQDVFLPVT 127

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E   + L+    E PS       LSR  L+          + L ++              
Sbjct: 128 EKGIIILIGATTENPSFEVNPALLSRCRLVILKGLKDSDISALLNK-------------A 174

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           L+  +    K +G+ V  E    IA  S G  RIA  LL  + + A       +  E+ +
Sbjct: 175 LEKDL--ILKESGVTVDGEVIEVIAQSSGGDARIALNLLDTLVESAAALDKPVLDLEVMN 232

Query: 248 A--ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
               L      K G +  D+                   +SA +   R +  D    YM+
Sbjct: 233 ELSVLPAGRYTKKGEEHYDI-------------------VSAFIKSLRGSDPDAALYYML 273

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           +       P+   R ++  + + +G+  P
Sbjct: 274 RMLEGGEDPKFIARRMVIFSSEDIGLSDP 302


>gi|254526293|ref|ZP_05138345.1| ATPase [Prochlorococcus marinus str. MIT 9202]
 gi|221537717|gb|EEE40170.1| ATPase [Prochlorococcus marinus str. MIT 9202]
          Length = 429

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 69/345 (20%), Positives = 127/345 (36%), Gaps = 45/345 (13%)

Query: 2   MDREGLLSRNVSQED--ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M  E L +    +E+       LRP+ LE+F GQ    +   +   A     + + + +F
Sbjct: 1   MHSENLFTDYSQEENNAPLADKLRPKNLEDFFGQQPILNENSLLRSAIL--NDKISNFIF 58

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFID 112
            GPPG+GKTTL ++++     +       V++   +L   + N +DR        +LFID
Sbjct: 59  SGPPGVGKTTLIEIISFNT-RSKLIKLNAVLSSVKELRNEIANAKDRLINSKRKTILFID 117

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           E+HR + + ++ L P++E+  +  +    E P     K  +SR  +             +
Sbjct: 118 EVHRFTAVQQDALLPSIENGIITFIGATTENPFFAVNKALVSRSRIFTLLPLAKNDLQKI 177

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
                I   +  Y  +              + +T +A   +   S G  R     L    
Sbjct: 178 -----IQKVITHYSKKK---------DSKKVHLTQDAISHLIKFSGGDARTLINALEMAI 223

Query: 231 DFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
           +      AK I   ++ A        +    + ++ Y          G    + ISA + 
Sbjct: 224 ETTADNDAKEININLSIA--------EDAIQKKNIVY-------HKNGQNHYDVISAFIK 268

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
             R +  D    ++         P    R L+  A + +GI  P+
Sbjct: 269 SIRGSDPDATLFWLANMLEAGEDPNFIFRRLLISASEDIGIADPN 313


>gi|154253206|ref|YP_001414030.1| recombination factor protein RarA [Parvibaculum lavamentivorans
           DS-1]
 gi|154157156|gb|ABS64373.1| AAA ATPase central domain protein [Parvibaculum lavamentivorans
           DS-1]
          Length = 434

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 75/343 (21%), Positives = 114/343 (33%), Gaps = 52/343 (15%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M +       +          LRP+ LEE  GQ                    L  V+F 
Sbjct: 1   MSNLFEAAGMDEGAPRPLADRLRPKVLEEVVGQEHLIGPKGPLGRM--LAQGHLSSVIFW 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEI 114
           GPPG GKTT+A+++A  +G++F   S  + +   DL  +      R       +LF+DEI
Sbjct: 59  GPPGTGKTTIARLLADRVGLHFEPMSA-IFSGVADLKKIFEAARGRRSTGKGTLLFVDEI 117

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++   P MED  + L+    E PS       LSR  ++            L  
Sbjct: 118 HRFNRAQQDSFLPVMEDGTVTLVGATTENPSFELNAALLSRAQVLVLNRLDDAALEELLS 177

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R        FY                 L +T++A   +   + G  R A  L   V   
Sbjct: 178 R-----AEAFYGE--------------SLPLTEDARASLRAMADGDGRYALNLAEEVHAL 218

Query: 233 AEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEP 292
             V        E  D A L  A+ +                   G       +SA     
Sbjct: 219 RAV--------EPMDTAALITAVQRRA------------PLYDKGREGHYNLVSALHKSI 258

Query: 293 RDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           R +  D    ++ +       P    R L+  A + +G+  P 
Sbjct: 259 RGSDCDAALYWLARMLVGGEEPLYIARRLVRAAIEDIGLADPE 301


>gi|305665149|ref|YP_003861436.1| putative AAA family ATPase protein [Maribacter sp. HTCC2170]
 gi|88709901|gb|EAR02133.1| putative AAA family ATPase protein [Maribacter sp. HTCC2170]
          Length = 425

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 70/336 (20%), Positives = 122/336 (36%), Gaps = 62/336 (18%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            +     +RP++L+E+  Q              K     +  ++  GPPG GKTTLA ++
Sbjct: 2   NEPLAERVRPKSLKEYISQNHLVGEAGSLTHQIKK--GIIPSIILWGPPGTGKTTLANII 59

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLED--------RDVLFIDEIHRLSIIVEEILY 126
           A E    F   S  + +   D+  ++   +           +LFIDEIHR S   ++ L 
Sbjct: 60  ANESQRPFYILSA-INSGVKDIREVIDKAKQTGGLFTAKNPILFIDEIHRFSKSQQDSLL 118

Query: 127 PAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
            A+E   + L+    E PS   +   LSR  +                        N + 
Sbjct: 119 GAVEKGWVTLIGATTENPSFEVIPALLSRCQVYVL---------------------NPFG 157

Query: 185 IEDLKTIVQRGAKL---TGLAVTDEAACEIAMR-SRGTPRIAGRLLRRVRDFAEVAHAKT 240
            EDL++++ R  K               E  +R S G  R    +   V + +E + A T
Sbjct: 158 KEDLESLLSRALKQDTYLKSKKIKLKETEALLRLSGGDGRKLLNIFELVIN-SEESDAIT 216

Query: 241 ITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
           +T E+  A + +     DK G    D+                   ISA +   R +  +
Sbjct: 217 VTNELVMARVQQNTVLYDKAGEQHYDI-------------------ISAFIKSIRGSDPN 257

Query: 299 LIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
               ++ +        +   R ++  A + +G+  P
Sbjct: 258 GAVYWLARMIEGGEDVKFIARRMLISASEDIGMANP 293


>gi|322392660|ref|ZP_08066120.1| AAA family ATPase [Streptococcus peroris ATCC 700780]
 gi|321144652|gb|EFX40053.1| AAA family ATPase [Streptococcus peroris ATCC 700780]
          Length = 429

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 70/326 (21%), Positives = 121/326 (37%), Gaps = 42/326 (12%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            D     +RP+T+++  GQ       K+     +A    L  ++  GPPG+GKT++A  +
Sbjct: 8   PDNLALRMRPKTIDQVIGQEHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAI 65

Query: 75  ARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           A      FR+ +  V +K      A         VL +DEIHRL    ++ L P +E   
Sbjct: 66  AGTTKYAFRTFNATVDSKKRLQEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGL 125

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + ++    E P         SR  +                            I+   T 
Sbjct: 126 VIMIGATTENPFFSVTPAIRSRVQIFELEPLSNQDVKE--------------AIQIALTD 171

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF--AEVAHAKTITREIADAA 249
            +RG     + + ++A   IA  + G  R A   L        A+    + IT +I + +
Sbjct: 172 PERGFD-FPVELDEDALDFIATSTNGDLRSAFNSLDLAVLSTPAKDNGVRHITLDIMENS 230

Query: 250 LLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           L R    +DK G    D+  L+ + ++  G  V              ++       +I+ 
Sbjct: 231 LQRSYITMDKDGDGHYDV--LSALQKSIRGSDVDA------------SLHYAAR--LIEA 274

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
           G +      R L  IA++ +G+  P 
Sbjct: 275 GDLP--SLARRLTVIAYEDIGLANPE 298


>gi|256847992|ref|ZP_05553436.1| ATPase [Lactobacillus coleohominis 101-4-CHN]
 gi|256715052|gb|EEU30029.1| ATPase [Lactobacillus coleohominis 101-4-CHN]
          Length = 427

 Score =  136 bits (342), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 71/326 (21%), Positives = 128/326 (39%), Gaps = 45/326 (13%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +     +RPRT+EE  GQ       K+     +A+   L  ++  GPPG GKT++A  +A
Sbjct: 4   EPLAYRMRPRTIEEVVGQQHLVGPGKIIWRMVQAK--MLSSMILYGPPGTGKTSIASAIA 61

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
                 FR+ +     K  DL  ++   +     +L +DEIHRL    ++ L P +E  +
Sbjct: 62  GSTKYAFRTLNAATDTK-KDLQIVVEEAKMSGTVILLLDEIHRLDKAKQDFLLPHLESGK 120

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           + +++G       + IN +    I + T++  +     +   + +     + E       
Sbjct: 121 I-ILIGATTENPYININPA----IRSRTQIFEVHPLKTNEMRVAVERALQDPE------- 168

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI--TREIADAALL 251
           RG     + + D+A  ++   + G  R A   L           A  I  T  I + ++ 
Sbjct: 169 RGLGKLPIQIDDDAETQLLTATNGDLRSALNGLELAAKSTPPNDAGQIHLTLPIIEESVQ 228

Query: 252 RLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY---MIQ 306
           + ++  DK G    D                   T+SA     R +  D    Y   +I+
Sbjct: 229 KRSLVADKNGDGHYD-------------------TVSAFQKSIRGSDVDAALHYLARLIE 269

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIP 332
            G +      R L  IA++ +G+  P
Sbjct: 270 AGDLPSI--ARRLSVIAYEDVGLANP 293


>gi|331265869|ref|YP_004325499.1| chromosome segregation helicase, ATPase, AAA family [Streptococcus
           oralis Uo5]
 gi|326682541|emb|CBZ00158.1| chromosome segregation helicase, ATPase, AAA family [Streptococcus
           oralis Uo5]
          Length = 423

 Score =  136 bits (342), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 69/326 (21%), Positives = 119/326 (36%), Gaps = 42/326 (12%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            D     +RP+T+++  GQ       K+     +A    L  ++  GPPG+GKT++A  +
Sbjct: 2   PDNLALRMRPKTIDQVIGQEHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           A      FR+ +  V +K      A         VL +DEIHRL    ++ L P +E   
Sbjct: 60  AGTTKYAFRTFNATVDSKKRLQEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGL 119

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + ++    E P         SR  +            PL ++                  
Sbjct: 120 VIMIGATTENPFFSVTPAIRSRVQIFEL--------EPLSNQDVKKALQTALSEP----- 166

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI--TREIADAA 249
            +RG     + + ++A   IA  + G  R A   L             T   T +I + +
Sbjct: 167 -ERGFD-FPVELDEDALDFIATSTNGDLRSAFNSLDLAVLSTPENDKGTRHITLDIMENS 224

Query: 250 LLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           L R    +DK G    D+  L+ + ++  G  V              ++       +I+ 
Sbjct: 225 LQRSYITMDKDGDGHYDV--LSALQKSIRGSDVDA------------SLHYAAR--LIEA 268

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
           G +      R L  IA++ +G+  P 
Sbjct: 269 GDLP--SLARRLTVIAYEDIGLANPE 292


>gi|123967627|ref|YP_001008485.1| recombination factor protein RarA [Prochlorococcus marinus str.
           AS9601]
 gi|123197737|gb|ABM69378.1| putative ATPase, AAA family [Prochlorococcus marinus str. AS9601]
          Length = 429

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 74/349 (21%), Positives = 128/349 (36%), Gaps = 53/349 (15%)

Query: 2   MDREGLLS--RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M  E L +    +         LRP+ LE+F GQ    +   +   A     + + + +F
Sbjct: 1   MHSENLFTNYSQIENNAPLADKLRPKNLEDFFGQQPILNENSLLRSAIL--NDKVSNFIF 58

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFID 112
            GPPG+GKTTL ++++          +  V++   +L   + N +DR        +LFID
Sbjct: 59  SGPPGVGKTTLIEIISFNTRSKLIRLNA-VLSSVKELRNEIANAKDRLINSKRKTILFID 117

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           E+HR + + ++ L P++E+  +  +    E P     K  +SR  +             +
Sbjct: 118 EVHRFTSLQQDALLPSIENGTITFIGATTENPFFAVNKALVSRSRIFTLLPLAENDLQKI 177

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
                I   +N Y  +              + +T +A   +   S G  R     L    
Sbjct: 178 -----IQKVINHYSKQK---------DSKKVYLTQDAISHLIKFSGGDARTLINALEMAI 223

Query: 231 DFAEVAHAKTITRE--IADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETIS 286
           +      AK I     IA+ AL +     DK G +  D+                   IS
Sbjct: 224 ETTSENDAKEININLSIAEDALQKKNIVYDKNGQNHYDV-------------------IS 264

Query: 287 AGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           A +   R +  D    ++         P    R L+  A + +GI  P+
Sbjct: 265 AFIKSIRGSDPDATLFWLANMLEAGEDPNFIFRRLLISASEDIGIADPN 313


>gi|3136020|emb|CAA19102.1| hypothetical protein MLCB1259.27 [Mycobacterium leprae]
          Length = 447

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 73/321 (22%), Positives = 119/321 (37%), Gaps = 48/321 (14%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            +RP +L+E  GQ    +         +     +   +  GPPG GKTTLA ++++  G 
Sbjct: 30  RMRPASLDELVGQGHLLAPGSPLRRLVEGSG--VVSAILHGPPGCGKTTLAALISQATGH 87

Query: 81  NFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
            F + S  + A   D+ A+L           R VLFIDE+HR S   ++ L  A+E+  +
Sbjct: 88  RFEALSA-LSAGVKDVRAVLKIARSALLSGKRTVLFIDEVHRFSKTQQDALLSAVENRVV 146

Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            L+    E PS   V   LSR                      + ++L     +D++ +V
Sbjct: 147 LLVAATTENPSFSVVAPLLSR---------------------SLILQLRPLNADDIRAVV 185

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           QR   +                     R+A    RRV    EVA     T +    A + 
Sbjct: 186 QRA--VDDPRGLGGQIAVAPEAVDLLVRLAAGDARRVLTALEVAAEAVQTGDELTVATIE 243

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
            ++D                R    G    + +SA +   R +  D    Y+ +      
Sbjct: 244 QSLD------------NAAVRYDRDGDQHYDIVSAFIKSVRGSDVDAALHYLARMLIAGE 291

Query: 313 TPR--GRLLMPIAWQHLGIDI 331
            PR   R L+ +A + +G+  
Sbjct: 292 DPRFIARRLLILASEDIGLAD 312


>gi|326388123|ref|ZP_08209726.1| recombination factor protein RarA [Novosphingobium nitrogenifigens
           DSM 19370]
 gi|326207289|gb|EGD58103.1| recombination factor protein RarA [Novosphingobium nitrogenifigens
           DSM 19370]
          Length = 443

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 69/340 (20%), Positives = 119/340 (35%), Gaps = 52/340 (15%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           +E   +    +       LRPRTL++  GQ               A    L  ++  GPP
Sbjct: 11  QEPTPTAAAPENGPLAERLRPRTLDDVIGQDHLTGPDGAIGRMVAA--GKLSSMILWGPP 68

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFIDEIHRL 117
           G GKT++A+++A  +G+ + S S  V +   DL            L  R +LF+DEIHR 
Sbjct: 69  GTGKTSIARLLADAVGMRYVSISA-VFSGVADLRKAFAEAESMAGLGRRTLLFVDEIHRF 127

Query: 118 SIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
           +   ++   P +E   + L+    E PS       LSR  ++                  
Sbjct: 128 NRAQQDGFLPYVERGTVTLVGATTENPSFALNAALLSRAQVLIL---------------- 171

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
                +  +   L  ++ R  +  G+ +    A   A+ +      A    R + + AE 
Sbjct: 172 -----HRLDAAALGQLLARAEETIGVPLPLTPAARDALIAS-----ADGDGRFLINQAET 221

Query: 236 AHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDA 295
               ++   +  A L +  + +M     D            G       ISA     R +
Sbjct: 222 LFDVSLAAPLDPAELSKFLMRRMAVYDKDR----------DGH---YNLISALHKSLRGS 268

Query: 296 IEDLIEPYMIQQGFIQRTPRG--RLLMPIAWQHLGIDIPH 333
                  Y+ +       P    R L+  A + +G+  P 
Sbjct: 269 DPQAALYYLARMLTAGEDPLYVLRRLVRFASEDIGLADPQ 308


>gi|259507363|ref|ZP_05750263.1| AAA family ATPase [Corynebacterium efficiens YS-314]
 gi|259165074|gb|EEW49628.1| AAA family ATPase [Corynebacterium efficiens YS-314]
          Length = 449

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 71/355 (20%), Positives = 122/355 (34%), Gaps = 62/355 (17%)

Query: 2   MDREGLLSRNVSQEDADIS--------------LLRPRTLEEFTGQVEACSNLKVFIEAA 47
           MD++ L         A  +               +RPRTL+E  GQ       +      
Sbjct: 1   MDQDSLFDTPSGSRAAQEATRYFHPGGHAPLAARMRPRTLDEVVGQQHLLGPGRPLRRLI 60

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL---- 103
           +   EA   V+  GPPG GKTT+A +++   G  F + S  + +   ++  ++       
Sbjct: 61  EGSGEA--SVILYGPPGTGKTTIASLISAATGDRFVALSA-LSSGVKEVREVINRARTDL 117

Query: 104 --EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAA 159
               R VLFIDE+HR S   ++ L  A+E+  + L+    E PS   V            
Sbjct: 118 IHGARTVLFIDEVHRFSKTQQDALLAAVENRTVLLVAATTENPSFSVVAP--------LL 169

Query: 160 TTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTP 219
           +  + L   PL D     +       E       RG     +  +  A  ++ + + G  
Sbjct: 170 SRSLLLQLEPLTDDDVRTVLDRALVDE-------RGLAG-RITASAAALDQLVLLAGGDA 221

Query: 220 RIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGP 279
           R     +    +        T+     +     +  D+ G    D+              
Sbjct: 222 RRGLTYIEAAAEAVADGGELTLDTVRDNVNRAVVRYDRDGDQHYDV-------------- 267

Query: 280 VGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
                +SA +   R +  D    Y+ +       PR   R L+  A + +G+  P
Sbjct: 268 -----VSAFIKSIRGSDVDAALHYLARMMEAGEDPRFIARRLVIHASEDIGMADP 317


>gi|225869353|ref|YP_002745301.1| ATPase [Streptococcus equi subsp. zooepidemicus]
 gi|225702629|emb|CAX00692.1| putative ATPase [Streptococcus equi subsp. zooepidemicus]
          Length = 423

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 69/327 (21%), Positives = 117/327 (35%), Gaps = 44/327 (13%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            D     +RPRT+ E  GQ       K+     KA    L  ++  GPPG+GKT++A  +
Sbjct: 2   PDNLAIRMRPRTITEVIGQQHLVGEGKIIDRMVKA--NRLSSMILYGPPGIGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           A      FR+ +  +  K      A         VL +DEIHRL    ++ L P +E   
Sbjct: 60  AGTTKYAFRTFNATIDNKKRLQEIAEEAKFSGGLVLLLDEIHRLDKSKQDFLLPLLEHGH 119

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVG-LLTNPLQDRFGIPIRLNFYEIEDLKT 190
           + ++    E P         SR  +          +   L+                + T
Sbjct: 120 IIMIGATTENPFFSVTPAIRSRVQIFELKPLSYEEIKQALR---------------LVIT 164

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT--REIADA 248
             +RG     + + + A   IA  + G  R A + L       +  +        +I + 
Sbjct: 165 DKERGFA-FDVTLDEAAFDFIATATNGDLRAAYQSLDLAVMSTQPDNEGIRHISLDIVEN 223

Query: 249 ALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           +L R    +DK G    D   L+ + ++  G  V              ++       +I+
Sbjct: 224 SLQRSYITMDKDGDGHYD--ILSALQKSIRGSDV------------NASLHYAAR--LIE 267

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            G +      R L  IA++ +G+  P 
Sbjct: 268 AGDLP--SLARRLTIIAYEDIGLANPE 292


>gi|126434949|ref|YP_001070640.1| recombination factor protein RarA [Mycobacterium sp. JLS]
 gi|126234749|gb|ABN98149.1| Recombination protein MgsA [Mycobacterium sp. JLS]
          Length = 445

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 76/324 (23%), Positives = 122/324 (37%), Gaps = 51/324 (15%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            +RP +L+E  GQ              +    A   V+  GPPG GKTTLA +++   G 
Sbjct: 28  RMRPASLDEVVGQQHLLKPNSPLRRLVEGSGAA--SVILYGPPGTGKTTLASLISHATGR 85

Query: 81  NFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
            F + S  + A   ++ A++           + VLFIDE+HR S   ++ L  A+E+  +
Sbjct: 86  RFEALSA-LSAGVKEVRAVIETARQGILRGQQTVLFIDEVHRFSKTQQDALLAAVENRIV 144

Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            L+    E PS   V   LSR  ++              D     +R    +   L    
Sbjct: 145 LLVAATTENPSFSVVAPLLSRSLILQLQPLAP-------DSIAEVVRRAVADPRGLAD-- 195

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
                   + V+D+A   I   S G  R A      V   +  A    +T +I + +L +
Sbjct: 196 -------SVDVSDDAVDLIVQLSAGDARRALTA-LEVAAESAAAADGRVTVDIVEQSLDK 247

Query: 253 LA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
            A   D+ G    D+                   +SA +   R +  D    Y+ +    
Sbjct: 248 AAVRYDRDGDQHYDV-------------------VSAFIKSVRGSDVDAALHYLARMLVA 288

Query: 311 QRTPR--GRLLMPIAWQHLGIDIP 332
              PR   R LM +A + +G+  P
Sbjct: 289 GEDPRFIARRLMILASEDIGMADP 312


>gi|108799292|ref|YP_639489.1| recombination factor protein RarA [Mycobacterium sp. MCS]
 gi|119868408|ref|YP_938360.1| recombination factor protein RarA [Mycobacterium sp. KMS]
 gi|108769711|gb|ABG08433.1| Recombination protein MgsA [Mycobacterium sp. MCS]
 gi|119694497|gb|ABL91570.1| Recombination protein MgsA [Mycobacterium sp. KMS]
          Length = 445

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 76/329 (23%), Positives = 125/329 (37%), Gaps = 61/329 (18%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            +RP +L+E  GQ              +    A   V+  GPPG GKTTLA +++   G 
Sbjct: 28  RMRPASLDEVVGQQHLLKPNSPLRRLVEGSGAA--SVILYGPPGTGKTTLASLISHATGR 85

Query: 81  NFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
            F + S  + A   ++ A++           + VLFIDE+HR S   ++ L  A+E+  +
Sbjct: 86  RFEALSA-LSAGVKEVRAVIETARQGILRGQQTVLFIDEVHRFSKTQQDALLAAVENRIV 144

Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            L+    E PS   V   LSR                      + ++L     + +  +V
Sbjct: 145 LLVAATTENPSFSVVAPLLSR---------------------SLILQLQPLAPDSITEVV 183

Query: 193 QRGAK-----LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           +R           + V+D+A   I   S G  R A      V   +  A    +T +I +
Sbjct: 184 RRAVADPRGLADSVDVSDDAVDLIVQLSAGDARRALTA-LEVAAESAAAADGRVTVDIVE 242

Query: 248 AALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
            +L + A   D+ G    D+                   +SA +   R +  D    Y+ 
Sbjct: 243 QSLDKAAVRYDRDGDQHYDV-------------------VSAFIKSVRGSDVDAALHYLA 283

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           +       PR   R LM +A + +G+  P
Sbjct: 284 RMLVAGEDPRFIARRLMILASEDIGMADP 312


>gi|217076507|ref|YP_002334223.1| recombination factor protein RarA [Thermosipho africanus TCF52B]
 gi|217036360|gb|ACJ74882.1| ATPase, AAA family [Thermosipho africanus TCF52B]
          Length = 410

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 68/322 (21%), Positives = 119/322 (36%), Gaps = 52/322 (16%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
            +LRP+  E+  GQ        +   A +   ++L   +F GPPG GKT+  +V+     
Sbjct: 6   EILRPKNFEDVVGQEHILGEKGILKLAIEK--DSLFSAIFYGPPGCGKTSTLEVIKLNTS 63

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLE-----DRDVLFIDEIHRLSIIVEEILYPAME--DF 132
                 +  + + A ++  +L          + ++FIDE HR +   ++I  P +E  D+
Sbjct: 64  YEVYHFNAAITSTA-EVKKILEYAAKVKDVKKILIFIDEFHRFNKKQQDIFLPGVEAFDY 122

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            L     E P        LSR  L+A                         + E +  ++
Sbjct: 123 VLIGATTENPYKMVNPALLSRVRLVA---------------------FKKLQKEHIIKLL 161

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           ++   +  + + + A   IA  S G  R A  L   + D A     K I  EI    L  
Sbjct: 162 EKAVNVKKVDINENAKDFIARVSNGDGRFAINLYEILSDIAISIDKKIIDEEI----LQI 217

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
            + D+      +  Y      ++      I++I       R +  D    YM +      
Sbjct: 218 YSSDE------NRVY--TAKEHYNLASAFIKSI-------RGSDPDAALYYMARMIEGGE 262

Query: 313 TPR--GRLLMPIAWQHLGIDIP 332
            PR   R L+ +A + +G+  P
Sbjct: 263 DPRFIARRLVILASEDIGLADP 284


>gi|270293098|ref|ZP_06199309.1| ATPase, AAA family [Streptococcus sp. M143]
 gi|270279077|gb|EFA24923.1| ATPase, AAA family [Streptococcus sp. M143]
          Length = 423

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 71/326 (21%), Positives = 121/326 (37%), Gaps = 42/326 (12%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            D     +RP+T+++  GQ       K+     +A    L  ++  GPPG+GKT++A  +
Sbjct: 2   PDNLALRMRPKTIDQVIGQEHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           A      FR+ +  V +K      A         VL +DEIHRL    ++ L P +E   
Sbjct: 60  AGTTKYAFRTFNATVDSKKRLQEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGL 119

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + ++    E P         SR  +            PL ++                  
Sbjct: 120 VIMIGATTENPFFSVTPAIRSRVQIFEL--------EPLSNQDVKEAIQIALSNP----- 166

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF--AEVAHAKTITREIADAA 249
            +RG     + + D+A   IA  + G  R A   L        A+      IT +I + +
Sbjct: 167 -ERGFD-FPVELDDDALDFIATSTNGDLRSAFNSLDLAVLSTPADDKGIHYITLDIMENS 224

Query: 250 LLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           L R    +DK G    D+  L+ + ++  G  V              ++       +I+ 
Sbjct: 225 LQRSYITMDKDGDGHYDV--LSALQKSIRGSDVDA------------SLHYAAR--LIEA 268

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
           G +      R L  IA++ +G+  P 
Sbjct: 269 GDLP--SLARRLTVIAYEDIGLANPE 292


>gi|262373850|ref|ZP_06067128.1| conserved hypothetical protein [Acinetobacter junii SH205]
 gi|262311603|gb|EEY92689.1| conserved hypothetical protein [Acinetobacter junii SH205]
          Length = 424

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 69/325 (21%), Positives = 115/325 (35%), Gaps = 53/325 (16%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
             LRPR L E  GQ           +        L  ++F GPPG+GKTT+A ++A+ + 
Sbjct: 10  ERLRPRDLSEIIGQDHLLGENAPLRQMIDQGH--LPSIIFWGPPGVGKTTIALLLAQAVD 67

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
             F S S  +     +L  ++    D    V+FIDEIHR +   ++ L  A+E  ++ L+
Sbjct: 68  RPFISLSA-LNTGVKELREVIAESGDLLTPVVFIDEIHRFNKSQQDALLNAVEKGKITLI 126

Query: 138 --VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR---FGIPIRLNFYEIEDLKTIV 192
               E PS       LSR  +    +        L ++       ++  F ++E+   ++
Sbjct: 127 GATTENPSFEVNSALLSRCQVYTLNSLDADAIQTLINKAIQSDKFLKERFIQVEEYDALI 186

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           Q  A                       R A  L+  +    E      +T  I      +
Sbjct: 187 QFAAG--------------------DARKALNLIDLIASTFEADVENVVTNAIVVKVAQQ 226

Query: 253 L--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
                DK G    DL                   +SA +   R +  D    +M +    
Sbjct: 227 NIARYDKSGEQHYDL-------------------VSAFIKSIRGSDPDATLYWMARMLKG 267

Query: 311 QRTP--RGRLLMPIAWQHLGIDIPH 333
              P    R ++  A + +G   P+
Sbjct: 268 GEDPIFIARRMLIAASEDIGNSNPN 292


>gi|257439846|ref|ZP_05615601.1| replication-associated recombination protein A [Faecalibacterium
           prausnitzii A2-165]
 gi|257197755|gb|EEU96039.1| replication-associated recombination protein A [Faecalibacterium
           prausnitzii A2-165]
          Length = 424

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 71/336 (21%), Positives = 124/336 (36%), Gaps = 60/336 (17%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            +     +RP+TL E  GQ    +  +VF    +  +  + +++F GP G GKTT+A+++
Sbjct: 2   NEPLAQRMRPKTLAEVCGQQHLLAPGRVFRRTIE--SGRIPNMIFYGPSGTGKTTVARII 59

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLE-----DRDVLFIDEIHRLSIIVEEILYPAM 129
           A   G+     +G      GD+ A+L ++         +L++DEI  L+   ++ L   +
Sbjct: 60  AENSGMTLHKLNG-TSCGTGDIKAVLKDIGTLAGAGGILLYLDEIQYLNKKQQQSLLECI 118

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ED  + L+    E P        LSR T+    +                         D
Sbjct: 119 EDGTVTLIASTTENPYFYIYNALLSRCTVFEFKS---------------------LTAAD 157

Query: 188 LKTIVQRGAKLT------GLAVTDEAACEIAMRSRGTPRIAGRLLR-RVRDFAEVAHAKT 240
           ++  ++   K         + + D+A   +A  + G  R A   L   V   A     K 
Sbjct: 158 VEQGLRNALKKLSESEGTPIRMEDDACAYLAESAGGDLRKALGCLDFAVTAAAPEPEGKH 217

Query: 241 ITREIADAALLR--LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
           IT ++      R  +  D+ G D  D+                   +SA     R +  D
Sbjct: 218 ITLDMIQQVTRRTAMRYDRDGDDHYDI-------------------VSAYQKSMRGSDPD 258

Query: 299 LIEPYMIQQGFIQRTPRG-RLLMPIAWQHLGIDIPH 333
               Y+ +       P   R LM  A + +G+  P 
Sbjct: 259 AALHYLARLLEAGDLPSACRRLMVCACEDVGLAYPQ 294


>gi|25028305|ref|NP_738359.1| recombination factor protein RarA [Corynebacterium efficiens
           YS-314]
 gi|23493589|dbj|BAC18559.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
          Length = 452

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 71/355 (20%), Positives = 122/355 (34%), Gaps = 62/355 (17%)

Query: 2   MDREGLLSRNVSQEDADIS--------------LLRPRTLEEFTGQVEACSNLKVFIEAA 47
           MD++ L         A  +               +RPRTL+E  GQ       +      
Sbjct: 4   MDQDSLFDTPSGSRAAQEATRYFHPGGHAPLAARMRPRTLDEVVGQQHLLGPGRPLRRLI 63

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL---- 103
           +   EA   V+  GPPG GKTT+A +++   G  F + S  + +   ++  ++       
Sbjct: 64  EGSGEA--SVILYGPPGTGKTTIASLISAATGDRFVALSA-LSSGVKEVREVINRARTDL 120

Query: 104 --EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAA 159
               R VLFIDE+HR S   ++ L  A+E+  + L+    E PS   V            
Sbjct: 121 IHGARTVLFIDEVHRFSKTQQDALLAAVENRTVLLVAATTENPSFSVVAP--------LL 172

Query: 160 TTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTP 219
           +  + L   PL D     +       E       RG     +  +  A  ++ + + G  
Sbjct: 173 SRSLLLQLEPLTDDDVRTVLDRALVDE-------RGLAG-RITASAAALDQLVLLAGGDA 224

Query: 220 RIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGP 279
           R     +    +        T+     +     +  D+ G    D+              
Sbjct: 225 RRGLTYIEAAAEAVADGGELTLDTVRDNVNRAVVRYDRDGDQHYDV-------------- 270

Query: 280 VGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
                +SA +   R +  D    Y+ +       PR   R L+  A + +G+  P
Sbjct: 271 -----VSAFIKSIRGSDVDAALHYLARMMEAGEDPRFIARRLVIHASEDIGMADP 320


>gi|29833388|ref|NP_828022.1| recombination factor protein RarA [Streptomyces avermitilis
           MA-4680]
 gi|29610511|dbj|BAC74557.1| putative ATP/GTP-binding protein [Streptomyces avermitilis MA-4680]
          Length = 453

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 82/354 (23%), Positives = 127/354 (35%), Gaps = 62/354 (17%)

Query: 3   DREGLLSRNVSQEDADIS----LLRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALD 55
           D     +    ++D   S     +RPRTL+E  GQ       S L+  +           
Sbjct: 6   DLFTAAAEERQEKDPSSSPLAVRMRPRTLDEVVGQQHLLKPGSPLRRLVGEGSGGPAGPS 65

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDV 108
            V+  GPPG GKTTLA VV++     F   S  + A   ++ A++              V
Sbjct: 66  SVILWGPPGTGKTTLAYVVSKATNKRFVELSA-ITAGVKEVRAVIDGARRATGGFGKETV 124

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFT-----LIAATT 161
           LF+DEIHR S   ++ L PA+E+  + L+    E P    +   LSR        +    
Sbjct: 125 LFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYFSVISPLLSRSLLLTLEPLTDDD 184

Query: 162 RVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRI 221
             GLL   L D  G+   +     +  + +++        A+T   A   A   +G P I
Sbjct: 185 LRGLLRRALTDERGLKEAVTL-PADTEEHLLRIAGGDARRALTALEAAAGAALDKGEPEI 243

Query: 222 AGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVG 281
             + L    D A V                    D+ G    D+   + + ++  G  V 
Sbjct: 244 GLQTLEETVDRAAVK------------------YDRDGDQHYDVA--SALIKSIRGSDV- 282

Query: 282 IETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                           D    Y+ +       PR   R LM  A + +G+  PH
Sbjct: 283 ----------------DAALHYLARMIEAGEDPRFIARRLMISASEDIGLTDPH 320


>gi|226953311|ref|ZP_03823775.1| recombination factor protein RarA [Acinetobacter sp. ATCC 27244]
 gi|226835937|gb|EEH68320.1| recombination factor protein RarA [Acinetobacter sp. ATCC 27244]
          Length = 425

 Score =  135 bits (341), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 70/325 (21%), Positives = 116/325 (35%), Gaps = 53/325 (16%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
             LRPR L E  GQ     +     +        L  ++F GPPG+GKTT+A ++A+ + 
Sbjct: 10  ERLRPRDLSEIIGQDHLLGDNAPLRQMIDQGH--LPSIIFWGPPGVGKTTIALLLAQAVD 67

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
             F S S  +     +L  ++    D    V+FIDEIHR +   ++ L  A+E  ++ L+
Sbjct: 68  RPFISLSA-LNTGVKELREVIAESGDLLTPVVFIDEIHRFNKSQQDALLNAVEKGKITLI 126

Query: 138 --VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP---IRLNFYEIEDLKTIV 192
               E PS       LSR  +    +        L ++       ++  F +IE+   ++
Sbjct: 127 GATTENPSFEVNSALLSRCQVYTLNSLDAEAIQTLLNKAIQTDKFLKERFIQIEEYDALI 186

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           Q  A                       R A  L+  +    E      +T  I      +
Sbjct: 187 QFAAG--------------------DARKALNLIDLIASTFEADVENVVTNAIVVKVAQQ 226

Query: 253 L--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
                DK G    DL                   +SA +   R +  D    +M +    
Sbjct: 227 NIARYDKSGEQHYDL-------------------VSAFIKSIRGSDPDATLYWMARMLKG 267

Query: 311 QRTPR--GRLLMPIAWQHLGIDIPH 333
              P    R ++  A + +G   P+
Sbjct: 268 GEDPVFIARRMLIAASEDIGNSNPN 292


>gi|239607930|gb|EEQ84917.1| AAA family ATPase [Ajellomyces dermatitidis ER-3]
          Length = 543

 Score =  135 bits (341), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 74/342 (21%), Positives = 124/342 (36%), Gaps = 67/342 (19%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEAC--SNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           S  +         +RP+TL++  GQ        L+  IE      + +  ++  G  G G
Sbjct: 121 SNALKNAAPLAERMRPQTLDDVCGQELVGPSGVLRGLIE-----QDRVPSMILWGGAGTG 175

Query: 67  KTTLAQVVARELGVNFRSTSGPV--IAKAGDLAALLTN----LEDRDVLFIDEIHRLSII 120
           KTT+A+V+A+ +G  F   +     IA+   L A   N       + +LF DEIHR S  
Sbjct: 176 KTTIARVIAKMVGSRFVEINSTNSGIAEWKKLFAEAKNELSLSGKKTILFCDEIHRFSKS 235

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            +++    +E  Q+  +    E PS+R     LSR                         
Sbjct: 236 QQDVFLGPVESGQITFIGATTENPSSRIQNALLSRCRTFTL------------------- 276

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAV------TDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
                 +E++ +I+ R  ++ G          DE    +A  + G  RI+  LL    D 
Sbjct: 277 --AKLTVENIVSILNRALEVEGSNYSPSPLVDDELIKYLAAFADGDARISLNLLELTMDL 334

Query: 233 AEVAHAKTITREIADAALLRL-AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
           +       +T+E    +L +    D++G    D                   TISA    
Sbjct: 335 SRREG---MTKEDLKKSLTKTLVYDRVGDQHYD-------------------TISAFHKS 372

Query: 292 PRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
            R    D    Y+ +       P    R L+ +A + +G+  
Sbjct: 373 IRGNDPDAALYYLARMIQSGEDPLYIARRLIVVASEDIGLAD 414


>gi|319945709|ref|ZP_08019960.1| AAA family ATPase [Streptococcus australis ATCC 700641]
 gi|319748069|gb|EFW00312.1| AAA family ATPase [Streptococcus australis ATCC 700641]
          Length = 423

 Score =  135 bits (341), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 69/326 (21%), Positives = 120/326 (36%), Gaps = 42/326 (12%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            D     +RP+T+++  GQ       K+     +A    L  ++  GPPG+GKT++A  +
Sbjct: 2   PDNLALRMRPKTIDQVIGQEHLVGEGKIIRRMVEA--NRLSSMILFGPPGIGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           A      FR+ +  V +K      A         VL +DEIHRL    ++ L P +E   
Sbjct: 60  AGTTKYAFRTFNATVDSKKRLQEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGL 119

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + ++    E P         SR  +            PL +            I+   + 
Sbjct: 120 VIMIGATTENPFFSVTPAIRSRVQIFEL--------EPLTNEQVKEA------IQLALSD 165

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT--REIADAA 249
            +RG     + + ++A   IA  + G  R A   L       +           EI + +
Sbjct: 166 SERGFD-FPVTLDEDALDFIATSTNGDLRSAYNSLDLAVLSTKEGEDGVRHISLEIMENS 224

Query: 250 LLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           L R    +DK G    D+  L+ + ++  G  V              ++       +I+ 
Sbjct: 225 LQRSYITMDKDGDGHYDV--LSALQKSIRGSDVDA------------SLHYAAR--LIEA 268

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
           G +      R L  IA++ +G+  P 
Sbjct: 269 GDLP--SLARRLTVIAYEDIGLANPE 292


>gi|308233738|ref|ZP_07664475.1| Recombination protein MgsA [Atopobium vaginae DSM 15829]
 gi|328943727|ref|ZP_08241192.1| AAA family ATPase [Atopobium vaginae DSM 15829]
 gi|327491696|gb|EGF23470.1| AAA family ATPase [Atopobium vaginae DSM 15829]
          Length = 475

 Score =  135 bits (341), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 73/335 (21%), Positives = 122/335 (36%), Gaps = 53/335 (15%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           +  D     +RPRTL+EF GQ         L++ IE      + L  ++  GPPG GKTT
Sbjct: 39  NSNDPLAVRMRPRTLDEFVGQKACIGKDSWLRLAIE-----RDILSSIILYGPPGTGKTT 93

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVE 122
           LAQ++A     +F   S  ++A+  D+   L     R        ++FIDEIHR S   +
Sbjct: 94  LAQIIAHTSSAHFVDLSA-LLARVKDVREELAQARSRLLITNVKTIMFIDEIHRFSRSQQ 152

Query: 123 EILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           + L   +E+  + L+    E P        +SR  +I  T                    
Sbjct: 153 DSLLKGVENRDVILIGATTENPYFEVNSALISRSKIIELTR------------------- 193

Query: 181 NFYEIEDLKTIVQRGAK-----LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
                +D+  I+ R             + + A   +   S G  R A   L      A  
Sbjct: 194 --LSDDDIACIIARALTDSRGLNNCFTLDESALQALIYMSAGDARAALTSLELASQVARP 251

Query: 236 AHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDA 295
             +    ++ +   L+ L   K+      L Y            +  + ISA +   R +
Sbjct: 252 NASDIHAQDGSKPILITLEHVKLANPARGLPY-------DKQQDMHYDIISAFIKSMRGS 304

Query: 296 IEDLIEPYMIQQGFIQRTP--RGRLLMPIAWQHLG 328
             D +  ++ +       P    R ++  A + +G
Sbjct: 305 DPDAVLYWLARMIDANEDPIFIARRILICASEDIG 339


>gi|225682615|gb|EEH20899.1| DNA-dependent ATPase MGS1 [Paracoccidioides brasiliensis Pb03]
          Length = 553

 Score =  135 bits (341), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 70/348 (20%), Positives = 123/348 (35%), Gaps = 69/348 (19%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEAC--SNLKVFIEAAKARAEALDHVLFVG 61
           +   +S  +         +RP+TL++  GQ        L+  IE      + +  ++  G
Sbjct: 123 KRSRVSNALRNAAPLAERMRPQTLDDVCGQELVGPSGVLRGLIE-----QDRVPSMVLWG 177

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEI 114
             G GKTT+A+V+A+ +G  F   +    +   +   L             + +LF DEI
Sbjct: 178 GAGTGKTTIARVIAKMVGSRFVEINS-TNSGVAECKKLFAEARNELSLSGKKTILFCDEI 236

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR S   +++    +E  Q+ L+    E PS +     LSR      +            
Sbjct: 237 HRFSKSQQDVFLSPVESGQITLIGTTTENPSFKVQNALLSRCRTFTLSK----------- 285

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAV------TDEAACEIAMRSRGTPRIAGRLL 226
                        +D+  I+ R  ++ G          DE    +A  + G  R +  LL
Sbjct: 286 ----------LTDQDIIMILNRALEVEGPNYSPSSLVDDELIKYLAAFADGDARTSLNLL 335

Query: 227 RRVRDFAEVAHAKTITREIADAALLRL-AIDKMGFDQLDLRYLTMIARNFGGGPVGIETI 285
               D +   H + +T++    +L R    D+ G    D                   TI
Sbjct: 336 ELAMDLS---HREGMTKDELKKSLTRTLVYDRAGDQHYD-------------------TI 373

Query: 286 SAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
           SA     R +  D    Y+ +       P    R L+ +A + +G+  
Sbjct: 374 SAFHKSIRGSDPDAALYYLARMIQSGEDPLYIARRLIVVASEDIGLAD 421


>gi|171778879|ref|ZP_02919941.1| hypothetical protein STRINF_00800 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282525|gb|EDT47949.1| hypothetical protein STRINF_00800 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 422

 Score =  135 bits (341), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 66/320 (20%), Positives = 120/320 (37%), Gaps = 42/320 (13%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            +RP+ +++  GQ       K+     +A    L  ++  GPPG+GKT++A  +A     
Sbjct: 8   RMRPKNIDQVIGQKHLVGEGKIIRRMVEA--NKLSSMILYGPPGIGKTSIASAIAGTTKY 65

Query: 81  NFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137
            FR+ +    +K      A         VL +DEIHRL    ++ L P +E+  + ++  
Sbjct: 66  AFRTFNATTDSKKRLQEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGNIIMIGA 125

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
             E P         SR        ++  L     D     ++    + E       RG +
Sbjct: 126 TTENPFFSVTPAIRSRV-------QIFELEPLSTDDIKQALQTALSDKE-------RGFE 171

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF--AEVAHAKTITREIADAALLRLA- 254
              + +  +A   IA  + G  R A   L        A+    + I  +  + +L R   
Sbjct: 172 -FDVDIDADALDFIATATNGDLRSAFNSLDLAVMSTKADDKGIRHINLDTVENSLQRSYI 230

Query: 255 -IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +DK G    D+  L+ + ++  G  V              ++       +I+ G +   
Sbjct: 231 TMDKNGDGHYDV--LSALQKSIRGSDV------------NASLHYAAR--LIEAGDLP-- 272

Query: 314 PRGRLLMPIAWQHLGIDIPH 333
              R L  IA++ +G+  P 
Sbjct: 273 SLARRLTVIAYEDIGLANPD 292


>gi|149918222|ref|ZP_01906714.1| AAA ATPase [Plesiocystis pacifica SIR-1]
 gi|149820982|gb|EDM80389.1| AAA ATPase [Plesiocystis pacifica SIR-1]
          Length = 513

 Score =  135 bits (341), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 78/349 (22%), Positives = 129/349 (36%), Gaps = 41/349 (11%)

Query: 1   MMDREGLLSRNVSQEDADI----SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH 56
           M  R+  L  +  + D  +      +RPR L+ + GQ       ++     +  ++ +  
Sbjct: 1   MSARDEDLFSHARRSDPALVPLAERMRPRDLDGYVGQEHLTGPGRLLRRVVE--SDRIPS 58

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVL 109
           ++F GPPG GKTTLA+++A   G +F + S    A   DL   +    +R        +L
Sbjct: 59  MIFWGPPGTGKTTLARIIASRTGAHFDTLSA-TDAGVKDLRKAVERARERRDYQGRATLL 117

Query: 110 FIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           F+DEIHR +   ++ L P +E     L+    E PS       LSR  ++          
Sbjct: 118 FVDEIHRFNKAQQDALLPHVEAGVCTLIGATTENPSFEVNAALLSRARVVQLRAL----- 172

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
                  GIP  ++   +       +RG     +  +D     IA+ S+G  R A   L 
Sbjct: 173 -------GIPQLVDI--LRAALEHDERGLGRRQVQASDRLLGAIALASQGDARRALNSLE 223

Query: 228 RVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISA 287
              D    A       E   A  L   +      Q  LRY      ++      I+++ A
Sbjct: 224 LAVDLVPDADPDAGEGEEGTARELSPELVAEALGQSHLRYDRDGEEHYNIASAFIKSMRA 283

Query: 288 GLSEPRDAIEDLIEPYMIQQGFIQRTPR---GRLLMPIAWQHLGIDIPH 333
                  +  D    +M +       P     R L+  A + +G   P 
Sbjct: 284 -------SDPDAAVYWMARMLEAG-EPLEFVARRLVIFAAEDVGNAEPQ 324


>gi|295396093|ref|ZP_06806276.1| AAA family ATPase [Brevibacterium mcbrellneri ATCC 49030]
 gi|294971034|gb|EFG46926.1| AAA family ATPase [Brevibacterium mcbrellneri ATCC 49030]
          Length = 460

 Score =  135 bits (341), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 78/340 (22%), Positives = 123/340 (36%), Gaps = 46/340 (13%)

Query: 16  DADISLLRPRTLEEFTGQVEA---CSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           D     +RPR+++E  GQ       S L+   E+          V+  GPPG+GKTT+A 
Sbjct: 14  DPLAVRMRPRSIDELVGQDHLTFKGSPLRQLAESDPRGVAGATSVILYGPPGVGKTTIAH 73

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEIL 125
            V+   G  F   S  + A   D+  ++ N            VLF+DEIHR S   ++ L
Sbjct: 74  AVSHAEGRRFVELSA-ITAGVKDVREVIENARRDREMRGLTTVLFLDEIHRFSKAQQDAL 132

Query: 126 YPAMEDFQLDLM--VGEGPSA--------RSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
            PA+E+  + L+    E PS         RS+ + L   T     T V   T  + D  G
Sbjct: 133 LPAVENRLVVLVAATTENPSFSVIAPLVSRSLVLQLKPLTEEHLRTLV---TRAVSDPRG 189

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
           +  +      E L  IV   +     ++T   A   + ++       G       D    
Sbjct: 190 LAGQFEL-SEEALDYIVSVASGDARRSLTVLEAAAASAKAEKDGGAEGDGAGSGADSDSG 248

Query: 236 AHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDA 295
           A           A    +  D+ G    D+                   ISA +   R +
Sbjct: 249 APVIEERHAAEAAQAAVVRYDRAGDQHYDV-------------------ISAFIKSIRGS 289

Query: 296 IEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
             D    Y+ +       PR   R ++  A + +G+  P+
Sbjct: 290 DPDAALHYLARMISAGEDPRFICRRVVISASEDIGMADPN 329


>gi|300214751|gb|ADJ79167.1| ATPase, AAA family [Lactobacillus salivarius CECT 5713]
          Length = 423

 Score =  135 bits (341), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 67/319 (21%), Positives = 126/319 (39%), Gaps = 37/319 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+ +++  GQ       K+     +A+   L  ++  GPPG GKT++A  +A 
Sbjct: 3   PLAYRMRPKNIDDVVGQQHLVGPGKIIRRMVEAK--LLSSMILYGPPGTGKTSIASAIAG 60

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR  +    +K   +            +L +DEIHRL+   ++ L P +ED  + 
Sbjct: 61  STKYAFRKMNAATDSKKKLEQVVEEAKFSGTVILLLDEIHRLTKPKQDFLLPHLEDGHI- 119

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           +++G       + IN +    I + T++  +    +D     I     + +D       G
Sbjct: 120 ILIGATTENPYISINPA----IRSRTQIFEVHPLNEDDIIQAINRAITDKDD-------G 168

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK--TITREIADAALLRL 253
                L + D+A  ++A+ + G  R A   L                +T EI +  + R 
Sbjct: 169 LGELPLQINDDAMHQLAIATHGDLRSALNALELAAKSTPKNSEGNIVLTLEIIEECMQRK 228

Query: 254 A--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
           A   DK G    D+  ++ + ++  G  V              A+  L    +I+   + 
Sbjct: 229 ALVQDKDGDAHYDV--ISALQKSIRGSDVDA------------ALHYLAR--LIEAEDLP 272

Query: 312 RTPRGRLLMPIAWQHLGID 330
              R RL+  IA++ +G+ 
Sbjct: 273 SISR-RLIT-IAYEDIGLA 289


>gi|239978419|ref|ZP_04700943.1| recombination factor protein RarA [Streptomyces albus J1074]
 gi|291450315|ref|ZP_06589705.1| recombination factor protein RarA [Streptomyces albus J1074]
 gi|291353264|gb|EFE80166.1| recombination factor protein RarA [Streptomyces albus J1074]
          Length = 454

 Score =  135 bits (341), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 78/353 (22%), Positives = 128/353 (36%), Gaps = 58/353 (16%)

Query: 2   MDREGLLSRNVSQEDADIS------LLRPRTLEEFTGQVEAC---SNLKVFIEAAKARAE 52
           M+ +   +    +++ D S       +RPRTL+E  GQ       S L+  +        
Sbjct: 1   MEPDLFTAAAEDRQEKDPSSSPLAVRMRPRTLDEVVGQQHLLKPGSPLRRLVGEGGGGPA 60

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------ED 105
               V   GPPG+GKTTLA VV++     F   S  + A   ++ A++            
Sbjct: 61  GPSSVFLWGPPGIGKTTLAYVVSKATNKRFVELSA-ITAGVKEVRAVIDGARRASGGFGK 119

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRV 163
             VLF+DEIHR S   ++ L PA+E+  + L+    E P    +            +  +
Sbjct: 120 ETVLFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYFSVI--------SPLLSRSL 171

Query: 164 GLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAG 223
            L   PL D     +       E       RG     + + ++A   +   + G  R A 
Sbjct: 172 LLTLEPLTDEDLRGLVHRALTDE-------RGLAG-SVTLAEDAEAHLLRVAGGDARRAL 223

Query: 224 RLLRRVRDFAEVAHAKTITREIADAALLR--LAIDKMGFDQLDLRYLTMIARNFGGGPVG 281
             L      A       IT    + ++ R  +A D+ G    D+   + + ++  G  V 
Sbjct: 224 TALEAGAGAALDKGEAEITLTTLEESVDRAAVAYDRAGDQHYDVA--SALIKSIRGSDV- 280

Query: 282 IETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
                           D    Y+ +       PR   R LM  A + +G+  P
Sbjct: 281 ----------------DAALHYLARMIDAGEDPRFIARRLMISASEDIGLADP 317


>gi|262280584|ref|ZP_06058368.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
 gi|262258362|gb|EEY77096.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
          Length = 421

 Score =  135 bits (341), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 71/325 (21%), Positives = 114/325 (35%), Gaps = 53/325 (16%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
             LRPR L E  GQ           +        L  ++F GPPG+GKTT+A ++A+ + 
Sbjct: 10  ERLRPRDLSEIIGQDHLLGENAPLRQMIDQGH--LPSIIFWGPPGVGKTTIALLLAQAID 67

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
             F S S  +     +L  ++    D    V+FIDEIHR +   ++ L  A+E  ++ L+
Sbjct: 68  RPFVSLSA-LNTGVKELREVIAESGDLLTPVVFIDEIHRFNKSQQDALLGAVEKGKITLV 126

Query: 138 --VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR---FGIPIRLNFYEIEDLKTIV 192
               E PS       LSR  +    +        L +        ++  +  IE+   ++
Sbjct: 127 GATTENPSFEVNSALLSRCQVYTLNSLDSEAIQTLINNALQADKFLKERYIHIEEYDALI 186

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           Q  A                       R A  LL  +    E     TIT  +      +
Sbjct: 187 QFAAG--------------------DARKALNLLDLIASTFEPEIENTITNAVVVKVAQQ 226

Query: 253 L--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
                DK G    DL                   +SA +   R +  D    +M +    
Sbjct: 227 NIARYDKSGEQHYDL-------------------VSAFIKSIRGSDPDATLYWMARMLKG 267

Query: 311 QRTPR--GRLLMPIAWQHLGIDIPH 333
              P    R ++  A + +G   P+
Sbjct: 268 GEDPVFIARRMLIAASEDIGNSNPN 292


>gi|290961834|ref|YP_003493016.1| ATP/GTP binding protein [Streptomyces scabiei 87.22]
 gi|260651360|emb|CBG74482.1| conserved ATP/GTP binding protein [Streptomyces scabiei 87.22]
          Length = 451

 Score =  135 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 84/355 (23%), Positives = 128/355 (36%), Gaps = 64/355 (18%)

Query: 3   DREGLLSRNVSQEDADIS----LLRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALD 55
           D     +    ++D   S     +RPRTL+E  GQ       S L+  +  +        
Sbjct: 4   DLFTAAAEERQEKDPAASPLAVRMRPRTLDEVVGQQHLLKPGSPLRRLVGESGGGPAGPS 63

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDV 108
            V+  GPPG GKTTLA VV++     F   S  + A   ++ A++              V
Sbjct: 64  SVILWGPPGTGKTTLAYVVSKATNKRFVELSA-ITAGVKEVRAVIEGARRATGGFGKETV 122

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFT-----LIAATT 161
           LF+DEIHR S   ++ L PA+E+  + L+    E P    +   LSR        +    
Sbjct: 123 LFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYFSVISPLLSRSLLLTLEPLTDDD 182

Query: 162 RVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT-GLAVTDEAACEIAMRSRGTPR 220
             GLL   L D  G+   +     ED +  + R A      A+T   A   A   +G   
Sbjct: 183 LRGLLRRALTDERGLKGAVTL--PEDTEAHLLRIAGGDARRALTALEAAAGAALDKGEGE 240

Query: 221 IAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV 280
           I  + L    D A V                    D+ G    D+   + + ++  G  V
Sbjct: 241 IGLQTLEETVDRAAVK------------------YDRDGDQHYDVA--SALIKSIRGSDV 280

Query: 281 GIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                            D    Y+ +       PR   R LM  A + +G+  P+
Sbjct: 281 -----------------DAALHYLARMIEAGEDPRFIARRLMISASEDIGLADPN 318


>gi|294648646|ref|ZP_06726108.1| recombination factor protein RarA [Acinetobacter haemolyticus ATCC
           19194]
 gi|292825436|gb|EFF84177.1| recombination factor protein RarA [Acinetobacter haemolyticus ATCC
           19194]
          Length = 426

 Score =  135 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 70/325 (21%), Positives = 116/325 (35%), Gaps = 53/325 (16%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
             LRPR L E  GQ     +     +        L  ++F GPPG+GKTT+A ++A+ + 
Sbjct: 11  ERLRPRDLSEIIGQDHLLGDNAPLRQMIDQGH--LPSIIFWGPPGVGKTTIALLLAQAVD 68

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
             F S S  +     +L  ++    D    V+FIDEIHR +   ++ L  A+E  ++ L+
Sbjct: 69  RPFISLSA-LNTGVKELREVIAESGDLLTPVVFIDEIHRFNKSQQDALLNAVEKGKITLI 127

Query: 138 --VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP---IRLNFYEIEDLKTIV 192
               E PS       LSR  +    +        L ++       ++  F +IE+   ++
Sbjct: 128 GATTENPSFEVNSALLSRCQVYTLNSLDAEAIQTLLNKAIQTDKFLKERFIQIEEYDALI 187

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           Q  A                       R A  L+  +    E      +T  I      +
Sbjct: 188 QFAAG--------------------DARKALNLIDLIASTFEADVENVVTNAIVVKVAQQ 227

Query: 253 L--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
                DK G    DL                   +SA +   R +  D    +M +    
Sbjct: 228 NIARYDKSGEQHYDL-------------------VSAFIKSIRGSDPDATLYWMARMLKG 268

Query: 311 QRTPR--GRLLMPIAWQHLGIDIPH 333
              P    R ++  A + +G   P+
Sbjct: 269 GEDPVFIARRMLIAASEDIGNSNPN 293


>gi|225011635|ref|ZP_03702073.1| AAA ATPase central domain protein [Flavobacteria bacterium
           MS024-2A]
 gi|225004138|gb|EEG42110.1| AAA ATPase central domain protein [Flavobacteria bacterium
           MS024-2A]
          Length = 425

 Score =  135 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 69/335 (20%), Positives = 120/335 (35%), Gaps = 64/335 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP++L E+ GQ           +           ++F GPPG GKTTLAQ++A 
Sbjct: 4   PLAERMRPKSLGEYFGQDHLVGPKGSLTQMI--SNGVFPSLIFWGPPGTGKTTLAQLLAL 61

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE--------DRDVLFIDEIHRLSIIVEEILYPA 128
           E    F   S  + A   ++  +++  E           +LFIDEIHR S   ++ L  A
Sbjct: 62  EKERPFYQLSA-INAGVKEIREIISKAEHSGGLFSGKSPILFIDEIHRFSKSQQDSLLNA 120

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           +E   + L+    E PS   +   LSR  +    T        +                
Sbjct: 121 VEKGIITLIGATTENPSFEVINALLSRCQVYVLNTLKKEDLEKI---------------- 164

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
            L   +++ + +    +  +    +   + G  R    LL  V   A       +T ++ 
Sbjct: 165 -LNHALEKDSIIKEYKIQLKETEALIELAGGDARKLLSLLELVIQ-ANSKEKLILTNDLV 222

Query: 247 DAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
              +   +   DK G    D   ++   ++  G            S+P  AI      ++
Sbjct: 223 FETVQTNSVLFDKNGDFHYD--IVSAFIKSIRG------------SDPNGAI-----YWL 263

Query: 305 IQQ-------GFIQRTPRGRLLMPIAWQHLGIDIP 332
            +        GFI      R ++ +A + +GI  P
Sbjct: 264 ARMIEGGEDIGFI-----ARRMLILAAEDIGIANP 293


>gi|116629863|ref|YP_815035.1| recombination factor protein RarA [Lactobacillus gasseri ATCC
           33323]
 gi|311110500|ref|ZP_07711897.1| ATPase, AAA family [Lactobacillus gasseri MV-22]
 gi|116095445|gb|ABJ60597.1| Recombination protein MgsA [Lactobacillus gasseri ATCC 33323]
 gi|311065654|gb|EFQ45994.1| ATPase, AAA family [Lactobacillus gasseri MV-22]
          Length = 432

 Score =  135 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 63/323 (19%), Positives = 110/323 (34%), Gaps = 36/323 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+ L+E  GQ     N K+     +A+   L  ++  GPPG+GKT++A  +A 
Sbjct: 3   PLAYRMRPKNLDEVVGQEHLVGNKKIIRRMVEAK--LLSSMILYGPPGIGKTSIASAIAG 60

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR  +     K    + A    +    +L +DEIHRL    ++ L P +E   + 
Sbjct: 61  STKYAFRKLNAATDTKKDLQIVAEEGKMSGTVILLLDEIHRLDKTKQDFLLPLLESGNII 120

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           L+    E P         SR  +           +   DR                T  +
Sbjct: 121 LIGATTENPYISISPAIRSRCQIFELHRLKSTDISKAIDR--------------ALTDSE 166

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR-RVRDFAEVAHAKTITREIADAALLR 252
            G     + +T +A   +  +  G  R     L   V    +   +K+   ++       
Sbjct: 167 NGLGKYNVELTKDARNLLIDKGNGDLRCTLNALELAVLSTDQEKKSKSHKDKLIIDKAEM 226

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY---MIQQGF 309
               +      D             G    + +SA     R +  D    Y   + + G 
Sbjct: 227 QDSIQFKSQNYD-----------SSGDGHYDLLSAFQKSIRGSDTDAALYYLGNLCESGD 275

Query: 310 IQRTPRGRLLMPIAWQHLGIDIP 332
           +      R L+ IA++ +G+  P
Sbjct: 276 LVAIC--RRLLVIAYEDIGLANP 296


>gi|254495330|ref|ZP_05108254.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [Polaribacter sp. MED152]
 gi|85819684|gb|EAQ40841.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [Polaribacter sp. MED152]
          Length = 423

 Score =  135 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 64/331 (19%), Positives = 121/331 (36%), Gaps = 54/331 (16%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            +     +RP+TLE++  Q        V     K     +  ++  GPPG+GKTTLA ++
Sbjct: 2   NEPLAERIRPKTLEDYISQQHLVGPKGVLTNLIKQ--GIIPSLILWGPPGIGKTTLANII 59

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLE--------DRDVLFIDEIHRLSIIVEEILY 126
           A E    F + S  + +   D+  ++   +           +LFIDEIHR S   ++ L 
Sbjct: 60  ATESNRPFYTLSA-ISSGVKDVREVIEKAKKSGGLFTAKNPILFIDEIHRFSKSQQDSLL 118

Query: 127 PAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
            A+E   + L+    E PS   +   LSR  +    +                     ++
Sbjct: 119 GAVEKGWVTLIGATTENPSFEVIPALLSRCQVYILNS---------------------FD 157

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
             DL  +++R  +                 +    R++G   R++ +  E+  +     E
Sbjct: 158 KNDLIALLERAIQK---DDILAGKTIKLTETDALLRVSGGDARKLLNIFELLVSTEDHVE 214

Query: 245 -IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
              D  L ++  +   +D+               G    + ISA +   R +  +    Y
Sbjct: 215 ITNDYVLDKIQQNTTRYDKT--------------GEQHYDIISAFIKSIRGSDPNAAVYY 260

Query: 304 MIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           + +        +   R L+ +A + +G   P
Sbjct: 261 LARMIEGGEDVKFIARRLLILASEDIGNANP 291


>gi|313885143|ref|ZP_07818895.1| ATPase, AAA family [Eremococcus coleocola ACS-139-V-Col8]
 gi|312619834|gb|EFR31271.1| ATPase, AAA family [Eremococcus coleocola ACS-139-V-Col8]
          Length = 424

 Score =  135 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 61/324 (18%), Positives = 115/324 (35%), Gaps = 41/324 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+ +++  GQ       ++     +A    L  ++  GPPG GKT++A  +A 
Sbjct: 4   PLAYRMRPQDIDQVLGQEHLVGPGRIIRRMVQA--NRLTSMILYGPPGTGKTSIATAIAG 61

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR  +    +K   ++A     +    +L +DEIHRL+ + ++ L P +E  +L 
Sbjct: 62  TTHYAFRQLNAATDSKKDLEIAVEEAKMSGTLILLLDEIHRLNKVKQDFLLPHLESGRLI 121

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           L+    E P         SR  +            PL     +         E      +
Sbjct: 122 LIGATTENPYISINPAIRSRAQIFEV--------KPLSSEEIVLGLQRALTDE------K 167

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK--TITREIADAALL 251
            G     ++++ +     A  ++G  R A   L                I++ IA+  L 
Sbjct: 168 NGLGKYNVSISSDVLQHFAHVTQGDIRSALNALELAVLSTPQNDQGQIVISQAIAEECLQ 227

Query: 252 --RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
             RL  D+ G    D+  ++ + ++  G  V        +      +             
Sbjct: 228 HKRLTHDRDGDAHYDV--ISALQKSIRGSDVNAALYYLAILLEAGELVIAC--------- 276

Query: 310 IQRTPRGRLLMPIAWQHLGIDIPH 333
                  R L+ IA++ +G+  P 
Sbjct: 277 -------RRLLVIAYEDIGLGNPQ 293


>gi|240170720|ref|ZP_04749379.1| recombination factor protein RarA [Mycobacterium kansasii ATCC
           12478]
          Length = 446

 Score =  135 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 81/332 (24%), Positives = 129/332 (38%), Gaps = 51/332 (15%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           +VS        +RP +L+E  GQ    +         +    A   V+  GPPG GKTTL
Sbjct: 20  DVSAGAPLAVRMRPASLDEVVGQDHLLAAGSPLRRLVEGSGVA--SVILYGPPGSGKTTL 77

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFIDEIHRLSIIVEEI 124
           A +V++  G  F + S  + A   D+ A++          ++ VLFIDE+HR S   ++ 
Sbjct: 78  AALVSQATGRRFEALSA-LSAGVKDVRAVIEGARRGLLAGEQTVLFIDEVHRFSKTQQDA 136

Query: 125 LYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           L  A+E+  + L+    E PS   V   LSR       + +  L     D   I ++   
Sbjct: 137 LLSAVENRVVLLVAATTENPSFAVVAPLLSR-------SLILQLRPLTSDDIRIVVQRAI 189

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            +         RG     + VT EA   +   + G  R A   L    + AE    + I 
Sbjct: 190 EDP--------RGFGG-RVVVTPEAVELLVQLAAGDARRALTALEVAAEVAEQVTVEAIE 240

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           + +  AA   +  D+ G    D+                   +SA +   R +  D    
Sbjct: 241 QSLDRAA---VRYDRNGDQHYDV-------------------VSAFIKSVRGSDVDAALH 278

Query: 303 YMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           Y+ +       PR   R LM +A + +G+  P
Sbjct: 279 YLARMLVAGEDPRFIARRLMILASEDIGMADP 310


>gi|297155792|gb|ADI05504.1| recombination factor protein RarA [Streptomyces bingchenggensis
           BCW-1]
          Length = 533

 Score =  135 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 86/357 (24%), Positives = 130/357 (36%), Gaps = 66/357 (18%)

Query: 2   MDREGLLSRNVSQEDADIS------LLRPRTLEEFTGQVEAC---SNLKVFIEAAKARAE 52
           M+ +   +    +++ D S       +RPRTL+E  GQ       S L+  +        
Sbjct: 1   MEPDLFTAAAEERQEKDPSSSPLAVRMRPRTLDEVVGQQHLLRPGSPLRRLVGEGSGGPA 60

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------ED 105
               V   GPPG+GKTTLA VV++     F   S  + A   ++ A++            
Sbjct: 61  GPSSVFLWGPPGIGKTTLAYVVSQATQKRFVELSA-ITAGVKEVRAVIDGARRSSGAYGR 119

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFT-----LIA 158
             VLF+DEIHR S   ++ L PA+E+  + L+    E P    +   LSR        + 
Sbjct: 120 ETVLFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYFSVISPLLSRSLLLTLEPLT 179

Query: 159 ATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT-GLAVTDEAACEIAMRSRG 217
                GLL   L D  G+   +     ED +  + R A      A+T   A   A  +RG
Sbjct: 180 DDDLRGLLHRALTDERGLGGAVTL--PEDAEGHLLRIAGGDARRALTALEAGAGAALARG 237

Query: 218 TPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGG 277
            P I    L    D A V                    D+ G    D+   + + ++  G
Sbjct: 238 EPAITLTTLEEAVDRAAVK------------------YDRAGDQHYDVA--SALIKSIRG 277

Query: 278 GPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
             V                 D    Y+ +       PR   R LM  A + +G+  P
Sbjct: 278 SDV-----------------DAALHYLARMIEAGEDPRFIARRLMISASEDIGLADP 317


>gi|332522252|ref|ZP_08398504.1| recombination factor protein RarA [Streptococcus porcinus str.
           Jelinkova 176]
 gi|332313516|gb|EGJ26501.1| recombination factor protein RarA [Streptococcus porcinus str.
           Jelinkova 176]
          Length = 420

 Score =  135 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 68/325 (20%), Positives = 118/325 (36%), Gaps = 42/325 (12%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           D     +RP+T+ E  GQ       K+     +A    L  ++  GPPG+GKT++A  +A
Sbjct: 3   DNLALRMRPKTISEVIGQEHLVGEGKIIRRMVEA--NMLSSMILYGPPGIGKTSIASAIA 60

Query: 76  RELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
                 FR+ +     K      A         VL +DEIHRL    ++ L P +E+  +
Sbjct: 61  GTTKYAFRTFNATTDTKKRLQEIADEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGNI 120

Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            ++    E P         SR  +            PL +             +      
Sbjct: 121 IMIGATTENPFFSVTPAIRSRVQIFEL--------EPLSNEAIKQAIAIAISDK------ 166

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA--EVAHAKTITREIADAAL 250
           +RG     + + ++A   IA  + G  R A   L         +    + I+ E  + +L
Sbjct: 167 ERGFS-FDIVLDEDALDFIATATNGDLRSAYNSLELAIMSTKEDANGKRHISLETVENSL 225

Query: 251 LRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            R    +DK G    D+  L+ + ++  G  V              ++       +I+ G
Sbjct: 226 QRSYITMDKNGDGHYDV--LSALQKSIRGSDV------------NASLHYAAR--LIEAG 269

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIPH 333
            +      R L  IA++ +G+  P 
Sbjct: 270 DLP--SLARRLTVIAYEDIGLANPD 292


>gi|157363945|ref|YP_001470712.1| recombination factor protein RarA [Thermotoga lettingae TMO]
 gi|157314549|gb|ABV33648.1| AAA ATPase central domain protein [Thermotoga lettingae TMO]
          Length = 436

 Score =  135 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 70/325 (21%), Positives = 121/325 (37%), Gaps = 45/325 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+ +E+  GQ        +  +A +     +   +  GPPG GK+++A+++ +
Sbjct: 9   PLAERVRPKNVEDLVGQQHVMGKEGILRKALEK--GMMFSCVLYGPPGCGKSSIAELIRK 66

Query: 77  ELGVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            +   F   SG +     I +A + A  +     + ++FIDEIHRL+   +++L   +ED
Sbjct: 67  HVDAEFFFFSGALHGANDIKQAMNRAQEMKRYGKQTIIFIDEIHRLNKAQQDLLLSKVED 126

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             + L+    E PS   +   LSR  +I           PL +   I I           
Sbjct: 127 GTITLIGATTENPSFEIIPPLLSRCRVIFL--------KPLSNEELIKIMKR-------A 171

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            IV        + VTDE    IA  S+G  R A   L    + A   + K +   +  A+
Sbjct: 172 IIVDEKIASYEINVTDEVFQAIAQMSQGDARFALNTLEIAIEAARGMNQKIVDFNVLQAS 231

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
                      +  D                     SA +   R +  D    YM +   
Sbjct: 232 SGYKPHGYRKEEHYDFA-------------------SAFIKSLRGSDPDAALYYMARMID 272

Query: 310 IQRTPR--GRLLMPIAWQHLGIDIP 332
               P    R ++ +A + +G+  P
Sbjct: 273 SGEDPMFIARRMIILASEDIGLADP 297


>gi|118617371|ref|YP_905703.1| recombination factor protein RarA [Mycobacterium ulcerans Agy99]
 gi|118569481|gb|ABL04232.1| conserved alanine, valine and leucine rich protein [Mycobacterium
           ulcerans Agy99]
          Length = 452

 Score =  135 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 82/339 (24%), Positives = 136/339 (40%), Gaps = 61/339 (17%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
            VS        +RP +L+E  GQ    +         +    A   V+  GPPG GKTTL
Sbjct: 24  EVSAGAPLAVRMRPESLDEVVGQGHLLAPGAPLRRLVEGSGVA--SVILYGPPGSGKTTL 81

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEI 124
           A +++   G  F + S  + A   D+ A++          ++ VLFIDE+HR S   ++ 
Sbjct: 82  AALISHATGRRFEALSA-LSAGVKDVRAVIETARQVLRRGEQTVLFIDEVHRFSKTQQDA 140

Query: 125 LYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           L  A+E+  + L+    E PS   V   LSR                      + ++L+ 
Sbjct: 141 LLSAVENRVVLLVAATTENPSFSVVAPLLSR---------------------SLILQLHP 179

Query: 183 YEIEDLKTIVQRGAKL-----TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
              ED++ +VQR A+        +A+  +A   +   S G  R A   L    + A+ A 
Sbjct: 180 LGAEDIRAVVQRAAQDPRGLGGRVAIAPDATDLLVQLSAGDARRALTALEVAAEAAQAAG 239

Query: 238 AKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDA 295
           ++  + EI + +L + A   D+ G    D+                   +SA +   R +
Sbjct: 240 SQV-SVEIIEQSLDKAAVRYDRDGDQHYDV-------------------VSAFIKSVRGS 279

Query: 296 IEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
             D    Y+ +       PR   R LM +A + +G+  P
Sbjct: 280 DVDAALHYLARMLVAGEDPRFVARRLMILASEDIGLADP 318


>gi|226290033|gb|EEH45517.1| DNA-dependent ATPase MGS1 [Paracoccidioides brasiliensis Pb18]
          Length = 553

 Score =  135 bits (341), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 72/348 (20%), Positives = 126/348 (36%), Gaps = 69/348 (19%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEAC--SNLKVFIEAAKARAEALDHVLFVG 61
           +   +S  +         +RP+TL++  GQ        L+  IE      + +  ++  G
Sbjct: 123 KRSRVSNALRNAAPLAERMRPQTLDDVCGQELVGPSGVLRGLIE-----QDRVPSMVLWG 177

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEI 114
             G GKTT+A+V+A+ +G  F   +    +   +   L             + +LF DEI
Sbjct: 178 GAGTGKTTIARVIAKMVGSRFVEINS-TNSGVAECKKLFAEARNELSLSGKKTILFCDEI 236

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR S   +++    +E  Q+ L+    E PS +     LSR              + L+D
Sbjct: 237 HRFSKSQQDVFLSPVESGQITLIGTTTENPSFKVQNALLSRCRTFTL--------SKLKD 288

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAV------TDEAACEIAMRSRGTPRIAGRLL 226
                        +D+  I+ R  ++ G          DE    +A  + G  R +  LL
Sbjct: 289 -------------QDIIMILNRALEVEGPNYSPSSLVDDELIKYLAAFADGDARTSLNLL 335

Query: 227 RRVRDFAEVAHAKTITREIADAALLRL-AIDKMGFDQLDLRYLTMIARNFGGGPVGIETI 285
               D +   H + +T++    +L R    D+ G    D                   TI
Sbjct: 336 ELAMDLS---HREGMTKDELKKSLTRTLVYDRAGDQHYD-------------------TI 373

Query: 286 SAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
           SA     R +  D    Y+ +       P    R L+ +A + +G+  
Sbjct: 374 SAFHKSIRGSDPDAALYYLARMIQSGEDPLYIARRLIVVASEDIGLAD 421


>gi|157412429|ref|YP_001483295.1| recombination factor protein RarA [Prochlorococcus marinus str. MIT
           9215]
 gi|157387004|gb|ABV49709.1| putative ATPase, AAA family [Prochlorococcus marinus str. MIT 9215]
          Length = 429

 Score =  135 bits (340), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 73/349 (20%), Positives = 127/349 (36%), Gaps = 53/349 (15%)

Query: 2   MDREGLLS--RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M  E L +    V         LRP+ LE+F GQ    +   +   A     + + + +F
Sbjct: 1   MHSENLFTDYSQVENNAPLADKLRPKNLEDFFGQQPILNENSLLRSAIL--NDKISNFIF 58

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFID 112
            GPPG+GKTTL ++++     +       V++   +L   + N ++R        +LFID
Sbjct: 59  SGPPGVGKTTLIEIISCNT-RSKLIKLNAVLSSVKELRNEIANAKERLINSKRKTILFID 117

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           E+HR + + ++ L P++E   +  +    E P     K  +SR  +      V      +
Sbjct: 118 EVHRFTAVQQDALLPSIESGIITFIGATTENPFFAVNKALVSRSRIFTLLPLVKNDLQKI 177

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
                I   +  Y  +              + +T +A   +   S G  R     L    
Sbjct: 178 -----IQKVITHYSKKK---------DSKKVHLTKDAISHLIKFSGGDARTLINALEMAI 223

Query: 231 DFAEVAHAKTITRE--IADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETIS 286
           +      AK I     IA+ A+ +     DK G +  D+                   IS
Sbjct: 224 ETTADNDAKEININLSIAEDAIQKKNIVYDKNGQNHYDV-------------------IS 264

Query: 287 AGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           A +   R +  D    ++         P    R L+  A + +GI  P+
Sbjct: 265 AFIKSIRGSDPDATLFWLANMLEAGEDPNFIFRRLLISASEDIGIADPN 313


>gi|255039465|ref|YP_003090086.1| AAA ATPase central domain-containing protein [Dyadobacter
           fermentans DSM 18053]
 gi|254952221|gb|ACT96921.1| AAA ATPase central domain protein [Dyadobacter fermentans DSM
           18053]
          Length = 423

 Score =  135 bits (340), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 73/322 (22%), Positives = 117/322 (36%), Gaps = 43/322 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRPRTL++F GQ +          A      A+  ++F GPPG+GKTTLA ++A 
Sbjct: 7   PLAERLRPRTLDDFVGQEKLLGPKGPLRRAILQ--NAIPSMIFWGPPGVGKTTLALLIAE 64

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQL 134
                F + S  + +   DL  +L         +LFIDEIHR +   ++ L  A+E  Q+
Sbjct: 65  TTKRQFYNLSA-ISSGVKDLREVLARPSGLFPAILFIDEIHRYNKSQQDALLGAVEKGQV 123

Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            L+    E PS       LSR  +             + + FG          ++LK ++
Sbjct: 124 TLIGATTENPSFEINSALLSRCQVY------------ILEAFG---------EKELKGLI 162

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            R  +                         GR L  + +   +        EI D  +  
Sbjct: 163 ARALEKDPWLKEKNIKFASYDALMRLSGGDGRKLLNLLELVVLGKGDAKKIEITDEWVTE 222

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           +A                IAR    G    + ISA +   R +  +    +M +      
Sbjct: 223 VAQQN-------------IARYDKSGEQHYDIISAFIKSLRGSDPNGAVYWMARMIVAGE 269

Query: 313 TPR--GRLLMPIAWQHLGIDIP 332
            P    R ++ +A + +G   P
Sbjct: 270 DPSFIARRMLIMASEDIGNANP 291


>gi|154287624|ref|XP_001544607.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150408248|gb|EDN03789.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 547

 Score =  135 bits (340), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 72/343 (20%), Positives = 118/343 (34%), Gaps = 69/343 (20%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEAC--SNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           S            +RPR+L++  GQ        L+  IE      + +  ++  G  G G
Sbjct: 122 SNAFENAAPLAERMRPRSLDDIYGQELIGPSGVLRGLIE-----QDRVPSMILWGGAGTG 176

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSI 119
           KTT+A+V+A+ +G  F   +    +   +   L    +        + ++F DEIHR S 
Sbjct: 177 KTTIARVIAKMVGSRFVEINS-TNSGVAECKKLFAEAKNELSLSGRKTIIFCDEIHRFSK 235

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             +++    +E  Q+ L+    E PS +     LSR                        
Sbjct: 236 SQQDVFLGPVESGQITLIGATTENPSFKVQNALLSRCRTFTL------------------ 277

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAV------TDEAACEIAMRSRGTPRIAGRLLRRVRD 231
                   ED+ +I+ R  K+ G          DE    +A  + G  R +  LL    D
Sbjct: 278 ---AKLTDEDIVSILNRALKVEGPNYSPSPLVDDELIKYLAAFADGDARTSLNLLELAMD 334

Query: 232 FAEVAHAKTITREIADAALLRL-AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
            +       +TRE    +L R    D+ G    D                   TISA   
Sbjct: 335 LSRREG---MTREDLKKSLTRTLVYDRAGDQHYD-------------------TISAFHK 372

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
             R    D    Y+ +       P    R L+ +A + +G+  
Sbjct: 373 SIRGNDPDASLYYLARMIQSGEDPLYIARRLIVVASEDIGLAD 415


>gi|302561719|ref|ZP_07314061.1| AAA family ATPase [Streptomyces griseoflavus Tu4000]
 gi|302479337|gb|EFL42430.1| AAA family ATPase [Streptomyces griseoflavus Tu4000]
          Length = 451

 Score =  135 bits (340), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 79/354 (22%), Positives = 128/354 (36%), Gaps = 58/354 (16%)

Query: 2   MDREGLLSRNVSQEDAD------ISLLRPRTLEEFTGQVEAC---SNLKVFIEAAKARAE 52
           M+ +   +    +++ D         +RPRTL+E  GQ       S L+  +    +   
Sbjct: 1   MEPDLFTAAAEERQEKDPTGSPLAVRMRPRTLDEVVGQQHLLKPGSPLRRLVGEGASGPA 60

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------ED 105
               V+  GPPG GKTTLA VV++     F   S  + A   ++ A++            
Sbjct: 61  GPSSVILWGPPGTGKTTLAYVVSKATNKRFVELSA-ITAGVKEVRAVIDGARRASGGYGQ 119

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRV 163
             VLF+DEIHR S   ++ L PA+E+  + L+    E P    +            +  +
Sbjct: 120 ETVLFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYFSVIS--------PLLSRSL 171

Query: 164 GLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAG 223
            L   PL D     +       E       RG K   + + D+ A  +   + G  R A 
Sbjct: 172 LLTLEPLTDDDIRDLLRRALTDE-------RGLKG-AVTLPDDTADHLQRIAGGDARRAL 223

Query: 224 RLLRRVRDFAEVAHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVG 281
             L      A       IT    +  + R A   D+ G    D+   + + ++  G  V 
Sbjct: 224 TALEAAAGAALDKGEAEITLATLEETVDRAAVKYDRDGDQHYDVA--SALIKSIRGSDV- 280

Query: 282 IETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                           D    Y+ +       PR   R LM  A + +G+  P+
Sbjct: 281 ----------------DAALHYLARMIEAGEDPRFIARRLMISASEDIGLADPN 318


>gi|19552845|ref|NP_600847.1| recombination factor protein RarA [Corynebacterium glutamicum ATCC
           13032]
 gi|21324402|dbj|BAB99026.1| Uncharacterized ATPase related to the helicase subunit of the
           Holliday junction resolvase [Corynebacterium glutamicum
           ATCC 13032]
          Length = 459

 Score =  135 bits (340), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 73/331 (22%), Positives = 124/331 (37%), Gaps = 58/331 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RPRTL+E  GQ       +      +   +A   V+  GPPG GKTT+A +++ 
Sbjct: 39  PLAARMRPRTLDEVVGQQHLLGEGRPLRRLIEGSGDA--SVILYGPPGTGKTTIASLISA 96

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLT------NLEDRDVLFIDEIHRLSIIVEEILYPAME 130
             G  F + S  + +   ++ A++        L  R VLFIDE+HR S   ++ L  A+E
Sbjct: 97  AAGDRFVAMSA-LSSGVKEVRAVIERARMDLQLGQRTVLFIDEVHRFSKTQQDALLSAVE 155

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAA-----TTRVGLLTNPLQDRFGIPIRLNFY 183
           +  + L+    E PS   V   LSR  L+            +L   L+D  G+       
Sbjct: 156 NRTVLLVAATTENPSFSVVSPLLSRSLLLQLESLSDEDIKTVLNKALEDERGLAG----- 210

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
                            +  TDEA  ++ + + G  R     +    +  E      I  
Sbjct: 211 ----------------RITATDEAVDQLVLLAGGDARRGLTYIEAAAEAVEDGGVLDIDT 254

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
            +A+     +  D+ G    D+                   +SA +   R +  D    Y
Sbjct: 255 VMANVNRAVVRYDRDGDQHYDV-------------------VSAWIKSIRGSDVDAALHY 295

Query: 304 MIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           + +       PR   R L+  + + +G+  P
Sbjct: 296 LARMIDAGEDPRFIARRLVVHSSEDIGMADP 326


>gi|298529786|ref|ZP_07017189.1| AAA ATPase central domain protein [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298511222|gb|EFI35125.1| AAA ATPase central domain protein [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 400

 Score =  135 bits (340), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 72/320 (22%), Positives = 128/320 (40%), Gaps = 55/320 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+++E+F GQ    + L+     A  +++ L   LF GPPG GK+TLA ++A 
Sbjct: 4   PLAEKIRPQSIEDFVGQSHLRTRLR-----AMGQSQRLQSTLFFGPPGCGKSTLALIIAG 58

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
             G +    S P I     LA L   LE  ++L +DE+HR S   ++   P +E  ++ L
Sbjct: 59  NQGKSHLRLSAPEIG----LAELRKKLEGLEILILDELHRFSKAQQDFFLPLLETGEIIL 114

Query: 137 M--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           +    E PS    +  LSR  ++   +                       + +L+ I +R
Sbjct: 115 LATTTENPSFSVTRQLLSRMNVLRLRS---------------------LSMPELRQIGER 153

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
             K   +++ +++   +A  S G  R    L+  VR+  +        + +   A+++  
Sbjct: 154 AVKELDVSIPEKSLDLLASLSGGDARTFLNLMEYVRELDQENLEPDKLKTVLPEAVIK-- 211

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
            D+ G    +L                    SA +   R +  D    Y+         P
Sbjct: 212 GDRDGDMHYELA-------------------SAMIKSIRGSDPDAALYYLACLLEAGEDP 252

Query: 315 R--GRLLMPIAWQHLGIDIP 332
           R   R L+  A + +G+  P
Sbjct: 253 RFVCRRLILSASEDVGLADP 272


>gi|148543723|ref|YP_001271093.1| recombination factor protein RarA [Lactobacillus reuteri DSM 20016]
 gi|184153130|ref|YP_001841471.1| recombination factor protein RarA [Lactobacillus reuteri JCM 1112]
 gi|227363297|ref|ZP_03847427.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri
           MM2-3]
 gi|325682095|ref|ZP_08161613.1| replication-associated recombination protein A [Lactobacillus
           reuteri MM4-1A]
 gi|148530757|gb|ABQ82756.1| Recombination protein MgsA [Lactobacillus reuteri DSM 20016]
 gi|183224474|dbj|BAG24991.1| conserved hypothetical protein [Lactobacillus reuteri JCM 1112]
 gi|227071660|gb|EEI09953.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri
           MM2-3]
 gi|324978739|gb|EGC15688.1| replication-associated recombination protein A [Lactobacillus
           reuteri MM4-1A]
          Length = 434

 Score =  135 bits (340), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 69/319 (21%), Positives = 123/319 (38%), Gaps = 37/319 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RPRTL+E  GQ       K+     KA+   L  ++  GPPG GKT++A  +A 
Sbjct: 4   PLAYRMRPRTLDEVVGQQHLVGPGKIISRMVKAK--MLSSMILYGPPGTGKTSIASAIAG 61

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR  +     K    + A    +    +L +DEIHRL  + ++ L P +E+ ++ 
Sbjct: 62  STKYAFRKLNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKVKQDFLLPHLENGRI- 120

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           +++G       + IN +    I + T++  +           I+    + E       RG
Sbjct: 121 ILIGATTENPYISINPA----IRSRTQIFPVHPLSTAEMKTAIQHALVDKE-------RG 169

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI--TREIADAALLRL 253
                L + + A  ++   + G  R A   L       + +    I  T  I + ++ + 
Sbjct: 170 LGNLPLVLEENAEDQLVAATNGDLRSALNGLELAAKSTDPSEDGKIHLTLPIIEESVQKK 229

Query: 254 AI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
           A+  DK G    D      +   F     G +T +A                +I+ G + 
Sbjct: 230 ALSADKDGDAHYD------VISAFQKSIRGSDTDAALH----------YLARLIEAGDLP 273

Query: 312 RTPRGRLLMPIAWQHLGID 330
                R LM  A++ +G+ 
Sbjct: 274 II--ARRLMVTAYEDIGLA 290


>gi|260061886|ref|YP_003194966.1| recombination factor protein RarA [Robiginitalea biformata
           HTCC2501]
 gi|88786019|gb|EAR17188.1| putative ATPase, AAA family protein [Robiginitalea biformata
           HTCC2501]
          Length = 427

 Score =  135 bits (340), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 66/335 (19%), Positives = 114/335 (34%), Gaps = 60/335 (17%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            +     +RPR L E+  Q                    +  ++F GPPG GKTTLA ++
Sbjct: 2   NEPLAERVRPRKLSEYLSQTHLVGPQGALTRQI--ANGTVPSMIFWGPPGTGKTTLAHII 59

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDR--------DVLFIDEIHRLSIIVEEILY 126
           A E G  F + S  + +   D+  ++               +LFIDEIHR S   ++ L 
Sbjct: 60  AEESGRPFFTLSA-INSGVKDVREVIEKARQGGGLFTTRNPILFIDEIHRFSKSQQDSLL 118

Query: 127 PAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
            A+E   + L+    E PS   +   LSR  +    +                     + 
Sbjct: 119 AAVEKGWVTLIGATTENPSFEVIPALLSRCQVYTLES---------------------FG 157

Query: 185 IEDLKTIVQRG-AKLTGLAVTDEAACEIA---MRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            EDL  +++R  A  + L   +    E       S G  R    +   V   +     + 
Sbjct: 158 KEDLLKLLERAMASDSQLQSREIKLEETDALLRLSGGDGRKLLNIFELVVSASPEDPVRI 217

Query: 241 ITREIADAALLR-LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
             + + D    +    DK G    D+                   ISA +   R +  + 
Sbjct: 218 TDKMVTDLVQNQPARYDKTGEQHYDI-------------------ISAFIKSIRGSDPNA 258

Query: 300 IEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
              ++ +        +   R ++  A + +G+  P
Sbjct: 259 AVYWLARMVAGGEDVKFIARRMVIAASEDIGLANP 293


>gi|332704198|ref|ZP_08424286.1| AAA ATPase central domain protein [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332554347|gb|EGJ51391.1| AAA ATPase central domain protein [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 426

 Score =  135 bits (340), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 83/321 (25%), Positives = 120/321 (37%), Gaps = 55/321 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP  L+EF GQ    S L+  + A +     L  +L  GPPG GK+TLA ++AR
Sbjct: 14  PLAERIRPADLDEFVGQRHLKSKLEALLRAKR-----LPSLLLFGPPGSGKSTLALLLAR 68

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
             G  +R  S P       LA L   L   D+L +DE+HR S   ++   P +E+ ++ L
Sbjct: 69  STGRPYRRVSAPETG----LAELRKQLSGVDLLILDEVHRYSKAQQDFFLPQLENGEVTL 124

Query: 137 M--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           +    E PS    +  LSR  ++           PL D              DL  I  R
Sbjct: 125 IATTTENPSFSVTRQLLSRLHVLRLM--------PLAD-------------PDLLEITNR 163

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
           G K   L + +E+   +A  S G  R    LL  V +           R      + R  
Sbjct: 164 GLKALNLEIPEESRRLVAGVSGGDARTLLNLLEYVAELPPEKREPQALRPALPEVIQR-- 221

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
            D+ G    +L                    SA +   R +  D    YM         P
Sbjct: 222 GDRGGDSHYELA-------------------SAMIKSIRGSDPDAALYYMACLLESGEDP 262

Query: 315 R--GRLLMPIAWQHLGIDIPH 333
           R   R L+  A + +G+  P 
Sbjct: 263 RFICRRLILSASEDVGLADPQ 283


>gi|322375733|ref|ZP_08050245.1| ATPase, AAA family [Streptococcus sp. C300]
 gi|321279441|gb|EFX56482.1| ATPase, AAA family [Streptococcus sp. C300]
          Length = 423

 Score =  135 bits (340), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 68/326 (20%), Positives = 116/326 (35%), Gaps = 42/326 (12%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            D     +RP+T+++  GQ       K+     +A    L  ++  GPPG+GKT++A  +
Sbjct: 2   PDNLALRMRPKTIDQVIGQEHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           A      FR+ +  V +K      A         VL +DEIHRL    ++ L P +E   
Sbjct: 60  AGTTKYAFRTFNATVDSKKRLQEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGL 119

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + ++    E P         SR  +                            I    T 
Sbjct: 120 VIMIGATTENPFFSVTPAIRSRVQIFELEPLSNQDVKE--------------AIRIALTD 165

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI--TREIADAA 249
            +RG     + + ++A   IA  + G  R A   L                 T +I + +
Sbjct: 166 PERGFD-FPVELDEDALDFIATSTNGDLRSAFNSLDLAVLSTPENDKGIRHITLDIMENS 224

Query: 250 LLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           L R    +DK G    D+  L+ + ++  G  V              ++       +I+ 
Sbjct: 225 LQRSYITMDKDGDGHYDV--LSALQKSIRGSDVDA------------SLHYAAR--LIEA 268

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
           G +      R L  IA++ +G+  P 
Sbjct: 269 GDLP--SLARRLTVIAYEDIGLANPE 292


>gi|238853694|ref|ZP_04644062.1| recombination factor protein RarA [Lactobacillus gasseri 202-4]
 gi|238833732|gb|EEQ26001.1| recombination factor protein RarA [Lactobacillus gasseri 202-4]
          Length = 432

 Score =  135 bits (340), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 63/323 (19%), Positives = 110/323 (34%), Gaps = 36/323 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+ L+E  GQ     N K+     +A+   L  ++  GPPG+GKT++A  +A 
Sbjct: 3   PLAYRMRPKNLDEVVGQEHLVGNKKIIRRMVEAK--LLSSMILYGPPGIGKTSIASAIAG 60

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR  +     K    + A    +    +L +DEIHRL    ++ L P +E   + 
Sbjct: 61  STKYAFRKLNAATDTKKDLQIVAEEGKMSGTVILLLDEIHRLDKTKQDFLLPLLESGNII 120

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           L+    E P         SR  +           +   DR                T  +
Sbjct: 121 LIGATTENPYISISPAIRSRCQIFELHRLKSTDISKAIDR--------------ALTDSE 166

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR-RVRDFAEVAHAKTITREIADAALLR 252
            G     + +T +A   +  +  G  R     L   V    +   +K+   ++       
Sbjct: 167 NGLGKYNVELTKDARNLLIDKGNGDLRCTLNALELAVLSTDQEKKSKSHKDKLIIDKAEM 226

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY---MIQQGF 309
               +      D             G    + +SA     R +  D    Y   + + G 
Sbjct: 227 QDSIQFKSQNYD-----------SSGDGHYDLLSAFQKSIRGSDTDAALYYLGNLCESGD 275

Query: 310 IQRTPRGRLLMPIAWQHLGIDIP 332
           +      R L+ IA++ +G+  P
Sbjct: 276 LVAIC--RRLLVIAYEDIGLANP 296


>gi|153864253|ref|ZP_01997214.1| Holliday junction DNA helicase RuvB [Beggiatoa sp. SS]
 gi|152146253|gb|EDN72787.1| Holliday junction DNA helicase RuvB [Beggiatoa sp. SS]
          Length = 121

 Score =  135 bits (340), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 54/108 (50%), Positives = 73/108 (67%)

Query: 224 RLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIE 283
           RLLRRVRD+A+V     I + IA  AL  L +D  G D +D + L  I   F GGPVGIE
Sbjct: 4   RLLRRVRDYAQVRADGQINQTIAQQALNLLNVDTYGLDLMDRKLLLSIMEKFEGGPVGIE 63

Query: 284 TISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
            ++A +SE R  IED+IEP+++QQGF++RT RGR++  +AWQH G+  
Sbjct: 64  NLAAVISEERGTIEDVIEPFLLQQGFLKRTARGRVVTRLAWQHFGLTP 111


>gi|159037439|ref|YP_001536692.1| recombination factor protein RarA [Salinispora arenicola CNS-205]
 gi|157916274|gb|ABV97701.1| AAA ATPase central domain protein [Salinispora arenicola CNS-205]
          Length = 502

 Score =  135 bits (340), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 71/334 (21%), Positives = 117/334 (35%), Gaps = 56/334 (16%)

Query: 15  EDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           +DA ++  +RP +L+E  GQ    +      +       A   V+  GPPG GKTT+A +
Sbjct: 33  DDAPLAVRMRPTSLDELIGQDHLRAPGAPLHQ--LVSGAAPMSVILWGPPGSGKTTIAHL 90

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILY 126
           VA      F + S  + A   D+ A++     +        VLFIDE+HR S   ++ L 
Sbjct: 91  VAGATDRRFVAMSA-LNAGVKDVRAVIEAARRQRRTGGPPTVLFIDEVHRFSKTQQDSLL 149

Query: 127 PAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI----PIRL 180
            A+ED  + L+    E P    +   LSR  L+            L  R  +        
Sbjct: 150 AAVEDRTVTLLAATTENPYFSVISPLLSRCVLLTLQPLDDDAVRSLLRRAVVDGRGLGGT 209

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
                +  + +V+  A     A+T   A   +  + G   I      +  D A V     
Sbjct: 210 PALAPDAEEHLVRLAAGDVRKALTALEAAAASATAVGASHIDLSTAEQAVDSAAVR---- 265

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
                          D+ G    D+                    SA +   R +  D  
Sbjct: 266 --------------YDRDGDGHYDV-------------------TSAFIKSMRGSDVDAA 292

Query: 301 EPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
             ++ +       PR   R ++  A + +G+  P
Sbjct: 293 LHWLARMLVAGEDPRFIARRMVIFASEDVGMADP 326


>gi|149179070|ref|ZP_01857643.1| hypothetical protein PM8797T_19475 [Planctomyces maris DSM 8797]
 gi|148842110|gb|EDL56500.1| hypothetical protein PM8797T_19475 [Planctomyces maris DSM 8797]
          Length = 445

 Score =  135 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 72/350 (20%), Positives = 130/350 (37%), Gaps = 62/350 (17%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           + DR+   S N+ +     + +RPR+LEEF GQ       K+        A+ +  ++F 
Sbjct: 3   LFDRQE--SGNLEKAKPLAARMRPRSLEEFVGQSHFLGEGKLLRR--ILAADRIGSLIFY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDE 113
           G PG GKT+LA+++AR+    F + +    A   ++ A L            + +LFIDE
Sbjct: 59  GSPGTGKTSLAELIARQSNRRFEALNAA-SAGIKEVRAALDRARDELATGGKQTILFIDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSR-----FTLIAATTRVGLL 166
           +H  S + +++L P +E   + L+      P    V   +SR     F  +       L+
Sbjct: 118 LHHFSKVQQDVLLPDVESGVVALIGATTSNPFFSLVSALISRSQIFEFQPLTPEEIQTLM 177

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
              LQD                    +RG     + V  +A   +     G  R +   L
Sbjct: 178 QRALQDE-------------------KRGLARYNVTVEQDALDFLIEVCDGDARRSLNAL 218

Query: 227 RRVRDFAEVAHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIET 284
             +   +     +    ++A  ++ + A   D+ G    D                   +
Sbjct: 219 E-IGVLSLHGSERVFDLDVAQESIQKKAIQYDQDGDAHYD-------------------S 258

Query: 285 ISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
            SA +   R +  D    ++ +       PR   R ++  A + +G   P
Sbjct: 259 ASALIKSMRGSDPDAALYWLARMIEAGEDPRFLARRIVIAASEDVGNADP 308


>gi|304389438|ref|ZP_07371401.1| replication-associated recombination protein A [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
 gi|304327248|gb|EFL94483.1| replication-associated recombination protein A [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
          Length = 445

 Score =  135 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 78/348 (22%), Positives = 126/348 (36%), Gaps = 53/348 (15%)

Query: 2   MDREGLLS------RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALD 55
           MD    LS           +      +RPR +EE  GQ    +         +   E   
Sbjct: 1   MDLFDSLSDTGKGVPEFRPDAPLAVRMRPRNVEELVGQSHLLAPNSPLQRLLRGDTEMTS 60

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DV 108
            V+  GPPG GKTTLA +VA+  G ++   S  + A   ++  ++   + R        +
Sbjct: 61  SVILYGPPGTGKTTLAYLVAQAGGRDYAQLSA-INAGVKEVREVINAAKQRLSLSGQETI 119

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLL 166
           LF+DE+HR S   ++ L PA+E+  + L+    E P+   +            +  + L 
Sbjct: 120 LFLDEVHRFSKSQQDSLLPAVENRWVILVAATTENPAFSVI--------SPLLSRSLLLT 171

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
             PL +R    I       E       RG       +T +A   +   +    R A  LL
Sbjct: 172 LQPLTNRDIEIIMDRALADE-------RGLGG-KYTLTPDAREILIRLASADGRKALTLL 223

Query: 227 RRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETIS 286
                 A+   A  IT E   AA    A+ + G D+                    +  S
Sbjct: 224 EAAAGGADSRAASEIT-ENDVAAAADTAVVRYGIDEH------------------YDVAS 264

Query: 287 AGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           A +   R +  D    Y+ +       PR   R ++  A + +G+  P
Sbjct: 265 AFIKSMRGSDPDAALHYLARMIKAGEDPRFIARRVVIAAAEDVGLADP 312


>gi|311113678|ref|YP_003984900.1| AAA family ATPase [Rothia dentocariosa ATCC 17931]
 gi|310945172|gb|ADP41466.1| AAA family ATPase [Rothia dentocariosa ATCC 17931]
          Length = 481

 Score =  135 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 77/347 (22%), Positives = 122/347 (35%), Gaps = 44/347 (12%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGL 65
           S   + +      +RPR ++E  GQ       S L+V   A K+       V+  GPPG 
Sbjct: 24  SSRTASQAPLAVRMRPRHVDEVFGQAHLLTPGSPLRVLAGADKSGPAGPSSVILYGPPGT 83

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLS 118
           GKTTLA V+AR  G  F   S  + A   D+ A++              VLF+DEIHR +
Sbjct: 84  GKTTLAHVIARAPGRKFVELSA-ITAGVKDVRAVMDQALLDRDMYGTTTVLFLDEIHRFT 142

Query: 119 IIVEEILYPAMEDFQLDLM--VGEGPSARSVKI-----NLSRFTLIAATTRVGLLTNPLQ 171
              ++ L P +E+  + L+    E PS   +        L R   +       L+   L+
Sbjct: 143 KAQQDALLPGVENRWVILVAATTENPSFSVISPLLSRSLLLRVHSLEPADIESLINRALE 202

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
           D  G                             ++A   +A  S G  R +   L     
Sbjct: 203 DPRGFNGAAVI---------------------DEDARAHLAAVSGGDARRSLTSLEAAAA 241

Query: 232 FAEVAHAKTITREIADAA---LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAG 288
            A   H +  + +    +   +      ++              R   GG    + ISA 
Sbjct: 242 IAFSEHEQVESPDENAESGGEVNPREPVRITLAHAQEAVDRAAVRYDKGGDQHYDVISAF 301

Query: 289 LSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +   R +  D    Y+ +       PR   R +M  A + +G+  P 
Sbjct: 302 IKSIRGSDADAAVHYLARMLEGGEDPRFVARRIMIAASEDIGLADPQ 348


>gi|14349166|dbj|BAB60709.1| Werner helicase interacting protein [Homo sapiens]
          Length = 665

 Score =  135 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 65/344 (18%), Positives = 123/344 (35%), Gaps = 31/344 (9%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           R + Q       +RP TL+++ GQ +A     +     +     +  +   GPPG GKTT
Sbjct: 219 RQMLQGKPLADTMRPDTLQDYFGQSKAVGQDTLLRSLLETNE--IPSLNLWGPPGCGKTT 276

Query: 70  LAQVVARELGVNFRST--SGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSII 120
           LA ++A     +           AK  D+  ++   +        + +LFIDEIHR +  
Sbjct: 277 LAHIIASNSKKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKS 336

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++   P +E   + L+    E PS +     LSR  +I            +  R    +
Sbjct: 337 QQDTFLPHVECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAINSL 396

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLA---VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
            ++  +       +   +  +      + D+A   +A  S G  R     L+     A +
Sbjct: 397 GIHVLDSSRPTDPLSHSSNSSSEPAMFIEDKAVDTLAYLSDGDARAGLNGLQLAV-LARL 455

Query: 236 AHAKTITRE-----IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
           +  K   ++          L+     K G  +  + Y      ++         ISA   
Sbjct: 456 SSRKMFCKKSGQSYSPSRVLITENDVKEGLQRSHILYDRAGEEHYNC-------ISALHK 508

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
             R + ++    ++ +       P    R L+  A + +G+  P
Sbjct: 509 SMRGSDQNASLYWLARMLEGGEDPLYVARRLVRFASEDIGLADP 552


>gi|294786969|ref|ZP_06752223.1| ATPase, AAA family [Parascardovia denticolens F0305]
 gi|315226608|ref|ZP_07868396.1| replication-associated recombination protein A [Parascardovia
           denticolens DSM 10105]
 gi|294485802|gb|EFG33436.1| ATPase, AAA family [Parascardovia denticolens F0305]
 gi|315120740|gb|EFT83872.1| replication-associated recombination protein A [Parascardovia
           denticolens DSM 10105]
          Length = 487

 Score =  135 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 77/328 (23%), Positives = 119/328 (36%), Gaps = 43/328 (13%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAE---ALDHVLFVGPPGLGKTTLAQVVARE 77
            +RP +L++  GQ             A A +    A   ++  GPPG+GKTTLA + A E
Sbjct: 23  RMRPTSLDQVVGQGRVLGEGSPLRRLASAPSHSRTAPSSIILFGPPGVGKTTLAYIAAHE 82

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAME 130
            G  F   S  VI    +L  +L     R        VLFIDE+HR S   ++ L PA+E
Sbjct: 83  SGRAFEELSA-VIDGVKELREVLARSRQRLVAEGKETVLFIDEVHRFSKSQQDALLPAVE 141

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +  +  +    E PS   +   LSR  ++                            E +
Sbjct: 142 NRDVTFIGATTENPSFSIISPLLSRSVVVKLEA---------------------LSQESI 180

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE-VAHAKTITREIAD 247
           K IV R  +       +    + A  +    R+AG   RR     E  A A T  ++   
Sbjct: 181 KAIVNRALRSKEGLGDEVRLDDSA--ADDIIRLAGGDARRALTILEAAAGAITGDKDRPR 238

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
                +    +    +D    T   R    G    +  SA +   R +  D    Y+ + 
Sbjct: 239 GRKRPVISSAVVVSVMD----TAQIRYDKAGDNHYDVASAFIKSMRGSDVDASLHYLARM 294

Query: 308 GFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                 PR   R ++  A + +G+  P 
Sbjct: 295 LRAGEDPRFIARRIIIAASEEVGMAAPQ 322


>gi|116493046|ref|YP_804781.1| recombination factor protein RarA [Pediococcus pentosaceus ATCC
           25745]
 gi|116103196|gb|ABJ68339.1| Recombination protein MgsA [Pediococcus pentosaceus ATCC 25745]
          Length = 425

 Score =  135 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 67/323 (20%), Positives = 122/323 (37%), Gaps = 49/323 (15%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            +RPRT+EE  GQ       K+     KA+   L  ++  GPPG GKT++A  ++     
Sbjct: 7   RMRPRTIEEIVGQQHLVGPGKIIDRMVKAK--LLSSMILYGPPGTGKTSIASAISGSTKY 64

Query: 81  NFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
            FR  +    +K    + A    +    +L +DEIHRL    ++ L P +E+  + +++G
Sbjct: 65  AFRILNAATDSKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPHLENGNI-ILIG 123

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV------Q 193
                  + IN                   ++ R  I         E  K ++       
Sbjct: 124 ATTENPYININ-----------------PAIRSRTQIFEVKPLQPDEIKKAVLAAIKDSS 166

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA--EVAHAKTITREIADAALL 251
           RG     + + ++A   ++  + G  R A   +         +      +T  I +  L 
Sbjct: 167 RGLGELPIVIDEDALKFVSESTNGDLRSALNAVELAARSTGPDENQKIHLTLAILEECLQ 226

Query: 252 RLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           + A   DK G    D      +   F     G +T +A        +  +    +++ G 
Sbjct: 227 KRALTQDKDGDAHYD------VISAFQKSIRGSDTDAA--------LHYMAR--LLESGD 270

Query: 310 IQRTPRGRLLMPIAWQHLGIDIP 332
           +Q     R L+ IA++ +G+  P
Sbjct: 271 LQSVI--RRLLIIAYEDIGLANP 291


>gi|25012002|ref|NP_736397.1| recombination factor protein RarA [Streptococcus agalactiae NEM316]
 gi|77412913|ref|ZP_00789117.1| ATPase, AAA family [Streptococcus agalactiae 515]
 gi|24413545|emb|CAD47623.1| Unknown [Streptococcus agalactiae NEM316]
 gi|77161053|gb|EAO72160.1| ATPase, AAA family [Streptococcus agalactiae 515]
          Length = 422

 Score =  135 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 70/325 (21%), Positives = 116/325 (35%), Gaps = 42/325 (12%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           D     +RPR + E  GQ     N K+      A    L  ++  GPPG+GKT++A  +A
Sbjct: 3   DNLALRMRPRNINEVIGQQHLVGNGKIIDRMVAA--NMLSSMILYGPPGIGKTSIASAIA 60

Query: 76  RELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
                 FR+ +  V +K      A         VL +DEIHRL    ++ L P +E+  +
Sbjct: 61  GTTKYAFRTFNATVDSKKRLQEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGNI 120

Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            ++    E P         SR  +            PL +            I+   +  
Sbjct: 121 IMIGATTENPFFSVTPAIRSRVQIFEL--------EPLSNEDIKKA------IQLAISDK 166

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT--REIADAAL 250
           +RG     + + DEA   I   + G  R A   L             +     E  + +L
Sbjct: 167 ERGFPFL-VTIDDEALDFIVTATNGDLRSAYNSLDLAVMSTSPNEDGSRHISLETMENSL 225

Query: 251 LRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            R    +DK G    D   L+ + ++  G  V              ++       +++ G
Sbjct: 226 QRSYITMDKNGDGHYD--ILSALQKSIRGSDV------------NASLHYAAR--LVEAG 269

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIPH 333
            +      R L  IA++ +G+  P 
Sbjct: 270 DLP--SLARRLTIIAYEDIGLANPE 292


>gi|307710680|ref|ZP_07647109.1| ATPase family associated with various cellular activities (AAA)
           family protein [Streptococcus mitis SK321]
 gi|307617451|gb|EFN96622.1| ATPase family associated with various cellular activities (AAA)
           family protein [Streptococcus mitis SK321]
          Length = 404

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 68/326 (20%), Positives = 118/326 (36%), Gaps = 42/326 (12%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            D     +RP+T+++  GQ       K+     +A    L  ++  GPPG+GKT++A  +
Sbjct: 2   PDNLALRMRPKTIDQVIGQEHLVGQGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           A      FR+ +  V +K      A         VL +DEIHRL    ++ L P +E   
Sbjct: 60  AGTTKYAFRTFNATVDSKKRLQEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGL 119

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + ++    E P         SR  +            PL ++                  
Sbjct: 120 IIMIGATTENPFFSVTPAIRSRVQIFEL--------EPLSNQDVKEALQIALSNP----- 166

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI--TREIADAA 249
            +RG     + + ++A   IA  + G  R A   L                 T +I + +
Sbjct: 167 -ERGFD-FPVELDEDALDFIATSTNGDLRSAFNSLDLAVLSTPENDEGIRHITLDIMENS 224

Query: 250 LLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           L R    +DK G    D+  L+ + ++  G  V              ++       +I+ 
Sbjct: 225 LQRSYITMDKDGNGHYDV--LSALQKSIRGSDVDA------------SLHYAAR--LIEA 268

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
           G +      R L  IA++ +G+  P 
Sbjct: 269 GDLP--SLARRLTVIAYEDIGLANPE 292


>gi|167464003|ref|ZP_02329092.1| recombination factor protein RarA [Paenibacillus larvae subsp.
           larvae BRL-230010]
 gi|322382959|ref|ZP_08056791.1| RarA-like protein [Paenibacillus larvae subsp. larvae B-3650]
 gi|321153079|gb|EFX45537.1| RarA-like protein [Paenibacillus larvae subsp. larvae B-3650]
          Length = 434

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 61/275 (22%), Positives = 100/275 (36%), Gaps = 28/275 (10%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD          +       +RP  L+E+ GQ       K+   A +A  + +  +L  G
Sbjct: 1   MDLFSYAEEQRGENKLLADRMRPTGLDEYIGQEHIVGPGKLLRRAIEA--DQVTSILLYG 58

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEI 114
           PPG GKTTLA ++++     F   +  V A   D+  ++   +        + +LF+DE+
Sbjct: 59  PPGTGKTTLANIISKRTQGQFVKLNA-VDASVKDVREVIEQAKQTKALYGRKTILFLDEV 117

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++ L PA+E   +  +    E P        LSR TL                
Sbjct: 118 HRFNSARQDALLPAVEQGIIVFIGATTENPFHYVNGALLSRSTLFQLRALTPEH------ 171

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
                       +       +RG     +   DEA   IA  + G  R A   L      
Sbjct: 172 --------ALLAMRRALADRERGLGFMDIEAEDEALAHIARTANGDIRRALNALELAALT 223

Query: 233 AEVAHAKT--ITREIADAALLRLAIDKMGFDQLDL 265
                  +  IT E+A+ ++ R  +      Q D+
Sbjct: 224 TAPQGDGSIHITLEVAEESIRRPTVKADESTQYDV 258


>gi|294628351|ref|ZP_06706911.1| AAA family ATPase [Streptomyces sp. e14]
 gi|292831684|gb|EFF90033.1| AAA family ATPase [Streptomyces sp. e14]
          Length = 451

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 85/355 (23%), Positives = 128/355 (36%), Gaps = 64/355 (18%)

Query: 3   DREGLLSRNVSQEDADIS----LLRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALD 55
           D     +    ++D   S     +RPRTL+E  GQ       S L+  +           
Sbjct: 4   DLFTAAAEERQEKDPAASPLAVRMRPRTLDEVVGQQHLLKPGSPLRRLVGEGAGGPAGPS 63

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDV 108
            V+  GPPG GKTTLA VV++     F   S  + A   ++ A++              V
Sbjct: 64  SVILWGPPGTGKTTLAYVVSKATNKRFVELSA-ITAGVKEVRAVIDGARRATGGYGQETV 122

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRV--- 163
           LF+DEIHR S   ++ L PA+E+  + L+    E P    +   LSR  L+         
Sbjct: 123 LFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYFSVISPLLSRSLLLTLEPLTDDD 182

Query: 164 --GLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT-GLAVTDEAACEIAMRSRGTPR 220
             GLL   L D  G+   +     ED +  + R A      A+T   A   A   +G   
Sbjct: 183 VRGLLRRALADERGLKSAVAL--PEDTEDHLLRIAGGDARRALTALEAAAGAALDKGENE 240

Query: 221 IAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV 280
           I+   L    D A V                    D+ G    D+   + + ++  G  V
Sbjct: 241 ISLTTLEETVDRAAVK------------------YDRDGDQHYDVA--SALIKSIRGSDV 280

Query: 281 GIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                            D    Y+ +       PR   R LM  A + +G+  P+
Sbjct: 281 -----------------DAALHYLARMIEAGEDPRFIARRLMISASEDIGLADPN 318


>gi|119194249|ref|XP_001247728.1| hypothetical protein CIMG_01499 [Coccidioides immitis RS]
          Length = 535

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 71/344 (20%), Positives = 123/344 (35%), Gaps = 69/344 (20%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSN--LKVFIEAAKARAEALDHVLFVGPPGL 65
           +S  + +       +RPRTL+E  GQ     N  L+  IEA     + +  ++  G  G 
Sbjct: 115 VSNALEKAAPLAERMRPRTLDEVCGQELVGQNGVLRGLIEA-----DRVPSMILWGGAGT 169

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLS 118
           GKTT+A+V+A  +G  F   +    +   +   +             + ++F DEIHR S
Sbjct: 170 GKTTIARVIATMVGSRFVEINS-TSSGVAECKKIFAEARNELRLAGRKTIIFCDEIHRFS 228

Query: 119 IIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
              +++    +E  Q+ L+    E PS +     LSR      +                
Sbjct: 229 KSQQDVFLGPVESGQVTLIGATTENPSFKVQNALLSRCRTFTLSK--------------- 273

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAV------TDEAACEIAMRSRGTPRIAGRLLRRVR 230
                    +D+ +I+ R  +L G          +E    +A  + G  R +  LL    
Sbjct: 274 ------LTDDDIISILNRALELEGPNYSPTNLVDEELIRYLAAFADGDARTSLNLLELAM 327

Query: 231 DFAEVAHAKTITREIADAALLRL-AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGL 289
           D ++      +T++     L R    D+ G    D                   TISA  
Sbjct: 328 DLSKRPG---MTKDELKKGLTRTLVYDRAGDQHYD-------------------TISAFH 365

Query: 290 SEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
              R +  D    Y+ +       P    R L+ +A + +G+  
Sbjct: 366 KSIRGSDPDAALYYLARMIQSGEDPLYIARRLIVVASEDVGLAD 409


>gi|317050664|ref|YP_004111780.1| AAA ATPase central domain-containing protein [Desulfurispirillum
           indicum S5]
 gi|316945748|gb|ADU65224.1| AAA ATPase central domain protein [Desulfurispirillum indicum S5]
          Length = 420

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 73/327 (22%), Positives = 116/327 (35%), Gaps = 55/327 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + LRP    +F GQ        +     +   + L   +F GPPG GKTTLA ++++
Sbjct: 12  PLAARLRPTDFADFVGQRHLLGERSLLRRMVEE--DKLVSAIFTGPPGTGKTTLAHIISQ 69

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAM 129
               +F + +  V A   D+ A+  + +        R VLFIDEIHR + I ++ L P +
Sbjct: 70  RTQSHFATLNA-VNAGTADIRAICKDAKELRLHQGQRTVLFIDEIHRFNKIQQDALLPEV 128

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E   + L+    + PS   V   LSR                      +   L+  + ED
Sbjct: 129 ESGNIILIGASTQNPSFALVPALLSR---------------------TVLFELHALDDED 167

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           +  +V+RG    G+ + DEA   I     G  R     +       +  H      +   
Sbjct: 168 MGRLVERGCAELGVTMDDEAREAIMTLCSGDGRRCLNTIEAAALLCQGNHITRQDIQ--- 224

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
                        D    +    I R         + ISA +   R +  D    Y+   
Sbjct: 225 -------------DSTPRK----IVRYDKNEDNHYDYISAFIKSVRGSDPDSALYYLAVM 267

Query: 308 GFIQRTPR--GRLLMPIAWQHLGIDIP 332
                 P    R L  +A + +G   P
Sbjct: 268 LEAGEDPLFIARRLAILASEDIGNAAP 294


>gi|319746115|gb|EFV98389.1| AAA family ATPase [Streptococcus agalactiae ATCC 13813]
          Length = 422

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 70/325 (21%), Positives = 117/325 (36%), Gaps = 42/325 (12%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           D     +RPR + E  GQ     N K+      A    L  ++  GPPG+GKT++A  +A
Sbjct: 3   DNLALRMRPRNINEVIGQQHLVGNGKIIDRMVAA--NMLSSMILYGPPGIGKTSIASAIA 60

Query: 76  RELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
                 FR+ +  V +K      A         VL +DEIHRL    ++ L P +E+  +
Sbjct: 61  GTTKYAFRTFNATVDSKKRLQEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGNI 120

Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            ++    E P         SR  +            PL +            I+   +  
Sbjct: 121 IMIGATTENPFFSVTPAIRSRVQIFEL--------EPLSNEDIKKA------IQLAISDK 166

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT--REIADAAL 250
           +RG     + + DEA   I   + G  R A   L             +     E  + +L
Sbjct: 167 ERGFPFL-VTIDDEALDFIVTATNGDLRSAYNSLDLAVMSTSPNEDGSRHISLETMENSL 225

Query: 251 LRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            R    +DK G    D+  L+ + ++  G  V              ++       +++ G
Sbjct: 226 QRSYITMDKNGDGHYDV--LSALQKSIRGSDV------------NASLHYAAR--LVEAG 269

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIPH 333
            +      R L  IA++ +G+  P 
Sbjct: 270 DLP--SLARRLTIIAYEDIGLANPE 292


>gi|296877179|ref|ZP_06901219.1| AAA family ATPase [Streptococcus parasanguinis ATCC 15912]
 gi|296431699|gb|EFH17506.1| AAA family ATPase [Streptococcus parasanguinis ATCC 15912]
          Length = 434

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 70/331 (21%), Positives = 121/331 (36%), Gaps = 42/331 (12%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           +     D     +RPRT+++  GQ       K+     +A    L  ++  GPPG+GKT+
Sbjct: 8   KEKEMPDNLALRMRPRTIDQVIGQQHLVGEGKIIRRMVEA--NRLSSMILYGPPGIGKTS 65

Query: 70  LAQVVARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           +A  +A      FR+ +  V +K      A         VL +DEIHRL    ++ L P 
Sbjct: 66  IASAIAGTTKYAFRTFNATVDSKKRLQEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPL 125

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           +E   + ++    E P         SR        ++  L     +     ++    + E
Sbjct: 126 LESGLVIMIGATTENPFFSVTPAIRSRV-------QIFELEPLTTEEVKQALKTALDDPE 178

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI--TRE 244
                  RG     + + ++A   IA  + G  R A   L                 T E
Sbjct: 179 -------RGFD-FPVVLDEDALDFIATSTNGDLRSAFNSLDLAVLSTSENAEGIRHITLE 230

Query: 245 IADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           I + +L R    +DK G    D+  L+ + ++  G  V              ++      
Sbjct: 231 IMENSLQRSYITMDKDGDGHYDV--LSALQKSIRGSDVDA------------SLHYAAR- 275

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            +I+ G +      R L  IA++ +G+  P 
Sbjct: 276 -LIEAGDLP--SLARRLTVIAYEDIGLANPD 303


>gi|325672565|ref|ZP_08152261.1| AAA family ATPase [Rhodococcus equi ATCC 33707]
 gi|325556442|gb|EGD26108.1| AAA family ATPase [Rhodococcus equi ATCC 33707]
          Length = 468

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 78/322 (24%), Positives = 120/322 (37%), Gaps = 43/322 (13%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            +RP  L E  GQ    +         +        VL  GPPG GKTTLA +++   G 
Sbjct: 48  RMRPAALSEVVGQQHLLAPGAPLRRLVEGSGA--SSVLLYGPPGTGKTTLASLISGATGR 105

Query: 81  NFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
            F + S        +    +LA       ++ VLFIDE+HR S   ++ L  A+E+  + 
Sbjct: 106 KFEALSALSAGVKEVRGVIELARRRLLQGEQTVLFIDEVHRFSKTQQDALLAAVENRIVL 165

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           L+    E PS   V   LSR                      + ++L     +D++ +++
Sbjct: 166 LVAATTENPSFSVVSPLLSR---------------------SLVLQLQSLTSDDIRLVIE 204

Query: 194 RGAKLTGLAVTDEAACEIAMRS-RGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           R             A EIA  +     R+A    RR     E A    + R     ALL 
Sbjct: 205 RA---RADERGLGGAVEIADDALEHLVRLAAGDARRALTALEAAAGTALDRTDERPALLD 261

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L   +   D+  +RY          G    + ISA +   R +  D    Y+ +      
Sbjct: 262 LETVESSVDKAAVRY-------DRDGDQHYDVISAFIKSIRGSDVDAALHYLARMITAGE 314

Query: 313 TPR--GRLLMPIAWQHLGIDIP 332
            PR   R L+  A + +G+  P
Sbjct: 315 DPRFIARRLVVHASEDIGMADP 336


>gi|77411974|ref|ZP_00788304.1| ATPase, AAA family [Streptococcus agalactiae CJB111]
 gi|77162000|gb|EAO72981.1| ATPase, AAA family [Streptococcus agalactiae CJB111]
          Length = 422

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 70/325 (21%), Positives = 117/325 (36%), Gaps = 42/325 (12%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           D     +RPR + E  GQ     N K+      A    L  ++  GPPG+GKT++A  +A
Sbjct: 3   DNLALRMRPRNINEVIGQQHLVGNGKIIDRMVAA--NMLSSMILYGPPGIGKTSIASAIA 60

Query: 76  RELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
                 FR+ +  V +K      A         VL +DEIHRL    ++ L P +E+  +
Sbjct: 61  GTTKYAFRTFNATVDSKKRLQEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGNI 120

Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            ++    E P         SR  +            PL +            I+   +  
Sbjct: 121 IMIGATTENPFFSVTPAIRSRVQIFEL--------EPLSNEDIKKA------IQLAISDK 166

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT--REIADAAL 250
           +RG     + + DEA   I   + G  R A   L             +     E  + +L
Sbjct: 167 ERGFPFL-VTIDDEALDFIVTATNGDLRSAYNSLDLAVMSTSPNEDGSRHISLETMENSL 225

Query: 251 LRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            R    +DK G    D+  L+ + ++  G  V              ++       +++ G
Sbjct: 226 QRSYITMDKNGDGHYDV--LSALQKSIRGSDV------------NASLHYAAR--LVEAG 269

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIPH 333
            +      R L  IA++ +G+  P 
Sbjct: 270 DLP--SLARRLTIIAYEDIGLANPE 292


>gi|111024084|ref|YP_707056.1| recombination factor protein RarA [Rhodococcus jostii RHA1]
 gi|110823614|gb|ABG98898.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [Rhodococcus jostii RHA1]
          Length = 478

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 76/321 (23%), Positives = 116/321 (36%), Gaps = 39/321 (12%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            +RPRTL E  GQ              +    A   VL  GPPG GKTTLA +++   G 
Sbjct: 48  RMRPRTLGEVVGQQHLLGPGAPLRRLVEGSGAA--SVLLYGPPGTGKTTLASLISGATGR 105

Query: 81  NFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
            F + S        +    +LA       ++ VLFIDE+HR S   ++ L  A+E+  + 
Sbjct: 106 RFEALSALSAGVKEVRGVIELARRRLLAGEQTVLFIDEVHRFSKTQQDALLAAVENRIVL 165

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           L+    E PS   V   LSR  ++   +        L +R                   +
Sbjct: 166 LVAATTENPSFSVVSPLLSRSLVLQLQSLTADDIENLLERARTD---------------E 210

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           RG     + +  +A   +   + G  R A   L      A      T    + D A +  
Sbjct: 211 RGLGG-EIEIAGDAMDHLVRLAAGDARRALTALEAAAGAALDQAGDTDRPVLLDLATVEA 269

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
           ++DK               R    G    + ISA +   R +  D    Y+ +       
Sbjct: 270 SVDKAA------------VRYDRDGDQHYDVISAFIKSIRGSDVDAALHYLARMLTAGED 317

Query: 314 PR--GRLLMPIAWQHLGIDIP 332
           PR   R L+  A + +G+  P
Sbjct: 318 PRFIARRLVVHASEDIGMADP 338


>gi|148910747|gb|ABR18440.1| unknown [Picea sitchensis]
          Length = 721

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 55/242 (22%), Positives = 90/242 (37%), Gaps = 27/242 (11%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGL 65
           S   S        +RP  ++E  GQ         L+  +E      + +  ++F GPPG 
Sbjct: 198 SSARSSTAPLSERMRPLLVDEVVGQDHLLGKNCILRSLLE-----CDRVPSIVFWGPPGT 252

Query: 66  GKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GKTTLA+ +A  +   F S S        + +  + A  +  +  R + F+DE+HR +  
Sbjct: 253 GKTTLARAIANSVSYRFSSVSAVTSGLKEVREVLEEAKRMKKMGQRTLFFVDEVHRFNKA 312

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++   P +ED  +  +    E PS       LSR  ++            L +R     
Sbjct: 313 QQDAFLPVVEDGSIVFIGATTENPSFEVNNALLSRCRVLTLNKLQPEHIRKLLERAVSDS 372

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEI-AMRSRGTPRIAGRLLRRVRDFAEVAH 237
                        +    K       +  A E  +  S G  R+A  +L  +   A VAH
Sbjct: 373 DKG----------LMVSLKGFSAVKVEVEAIEFLSCASDGDARVALNVLE-IAASAAVAH 421

Query: 238 AK 239
            K
Sbjct: 422 EK 423


>gi|315656685|ref|ZP_07909572.1| replication-associated recombination protein A [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
 gi|315492640|gb|EFU82244.1| replication-associated recombination protein A [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
          Length = 445

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 78/348 (22%), Positives = 126/348 (36%), Gaps = 53/348 (15%)

Query: 2   MDREGLLS------RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALD 55
           MD    LS           +      +RPR +EE  GQ    +         +   E   
Sbjct: 1   MDLFDSLSDTGKGVPEFRPDAPLAVRMRPRNVEELVGQSHLLAPNSPLQRLLRGDTEMTS 60

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DV 108
            V+  GPPG GKTTLA +VA+  G ++   S  + A   ++  ++   + R        +
Sbjct: 61  SVILYGPPGTGKTTLAYLVAQAGGRDYAQLSA-INAGVKEVREVINAAKQRLSLSGQETI 119

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLL 166
           LF+DE+HR S   ++ L PA+E+  + L+    E P+   +            +  + L 
Sbjct: 120 LFLDEVHRFSKSQQDSLLPAVENRWVILVAATTENPAFSVI--------SPLLSRSLLLT 171

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
             PL +R    I       E       RG       +T +A   +   +    R A  LL
Sbjct: 172 LQPLTNRDIEIIMDRALADE-------RGLGG-KYTLTPDAREILIRLASADGRKALTLL 223

Query: 227 RRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETIS 286
                 A+   A  IT E   AA    A+ + G D+                    +  S
Sbjct: 224 EAAAGGADSRAASEIT-EDDVAAAADTAVVRYGIDEH------------------YDVAS 264

Query: 287 AGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           A +   R +  D    Y+ +       PR   R ++  A + +G+  P
Sbjct: 265 AFIKSMRGSDPDAALHYLARMIKAGEDPRFIARRVVIAAAEDVGLADP 312


>gi|251781644|ref|YP_002995946.1| recombination factor protein RarA [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
 gi|242390273|dbj|BAH80732.1| recombination factor protein [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|323126434|gb|ADX23731.1| recombination factor protein RarA [Streptococcus dysgalactiae
           subsp. equisimilis ATCC 12394]
          Length = 429

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 69/326 (21%), Positives = 119/326 (36%), Gaps = 42/326 (12%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            D     +RP+T+ E  GQ       K+     +A    L  ++  GPPG+GKT++A  +
Sbjct: 2   PDHLALRMRPKTISEVIGQEHLVGEGKIIRRMVEA--NMLSSMILYGPPGIGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           A      FR+ +  V +K      A         VL +DEIHRL    ++ L P +E+  
Sbjct: 60  AGTTKYAFRTFNATVDSKKRLQEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGT 119

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + ++    E P         SR  +            PL +             +     
Sbjct: 120 IIMIGATTENPFFSVTPAIRSRVQIFEL--------EPLSNEDIKRALRTAITDK----- 166

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA--EVAHAKTITREIADAA 249
            +RG     + + D A   IA  + G  R A   L         +    + IT +  + +
Sbjct: 167 -ERGFA-FDVMLDDNALDFIATATNGDLRSAYHSLDLAVMSTKPDSDGKRHITLDTVENS 224

Query: 250 LLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           L R    +DK G    D+  L+ + +   G  V              ++       +++ 
Sbjct: 225 LQRSYITMDKDGDGHYDV--LSALQKAIRGSDV------------NASLHYAAR--LVEA 268

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
           G +      R L+ IA++ +G+  P 
Sbjct: 269 GDLP--SLARRLIVIAYEDIGLANPD 292


>gi|210633878|ref|ZP_03297893.1| hypothetical protein COLSTE_01810 [Collinsella stercoris DSM 13279]
 gi|210159047|gb|EEA90018.1| hypothetical protein COLSTE_01810 [Collinsella stercoris DSM 13279]
          Length = 446

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 72/345 (20%), Positives = 118/345 (34%), Gaps = 39/345 (11%)

Query: 3   DREGLLSRNVSQED----ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
             + L S N   +          +RP +L+++ GQ +A         A +   + L  V+
Sbjct: 5   HMDTLFSSNERSKQLKNAPLAVRMRPSSLDDYVGQEKAVGPGSWLRSAIE--HDVLSSVI 62

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFI 111
             GP G GKTTLA ++A      F   S  V     DL   +   +        R +LFI
Sbjct: 63  LYGPAGTGKTTLAHIIAAHTKSEFVEVSA-VTGTVKDLRREIDEAKHRLMMFDRRTILFI 121

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DEIHR S   ++ L  A+E+  + ++    E P        LSR  ++            
Sbjct: 122 DEIHRFSRSQQDALLHAVENRTVVMIGATTENPYFEVNAALLSRSRVVELEHLSDADVER 181

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           L  R            E L             AV+DE    I   + G  R +   L   
Sbjct: 182 LVRR-------ALSAPEGLAG---------RYAVSDEVVSAICTLAAGDGRSSLTTLELA 225

Query: 230 RDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGL 289
            + A          E  ++  + + +D +                   G +  + ISA +
Sbjct: 226 SEIALTRPVGEGEAERRESDPIEITLDDVKQANPRRGL-----SYDKNGDMHYDIISAFI 280

Query: 290 SEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
              R +  D    ++ +       P+   R +M  A + +G   P
Sbjct: 281 KSMRGSDPDAAVYWLARMIDAGEDPKFIARRIMIQASEDIGNADP 325


>gi|296114938|ref|ZP_06833584.1| recombination factor protein RarA [Gluconacetobacter hansenii ATCC
           23769]
 gi|295978496|gb|EFG85228.1| recombination factor protein RarA [Gluconacetobacter hansenii ATCC
           23769]
          Length = 466

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 71/338 (21%), Positives = 112/338 (33%), Gaps = 56/338 (16%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           +    S+       LRP TL++  GQ            +   R  +L  ++  G PG+GK
Sbjct: 40  VEEGASRHRPLADRLRPETLDQVVGQDHLLGPEGTL--SLMLRHHSLASLILWGGPGVGK 97

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIV 121
           TT+A+++A   G+ F   S  V +   DL         R       +LF+DEIHR +   
Sbjct: 98  TTIARLLAHAAGLRFVQISA-VFSGVADLKRAFEEARRRAANGEGTLLFVDEIHRFNRAQ 156

Query: 122 EEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           ++   P +ED  + L+    E PS       LSR  ++                      
Sbjct: 157 QDGFLPVVEDGTVVLVGATTENPSFALNGALLSRCQVLVLRR------------------ 198

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
               +   L+ ++ R    TG A+   A     +R+         LL  V          
Sbjct: 199 ---LDDAALEQLLCRAEGETGRALPLTAPARATLRAMADGD-GRYLLNMVEQILAQPGDM 254

Query: 240 TITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
               +     L R A   DK   +  +L                   ISA     R +  
Sbjct: 255 VFDPQSLSRLLARRAALYDKDREEHYNL-------------------ISALHKSMRGSDP 295

Query: 298 DLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           D    +  +       PR   R L   A + +G+  P 
Sbjct: 296 DAALYWFARMLEGGEDPRYIARRLTRFAAEDVGMADPQ 333


>gi|157103374|ref|XP_001647950.1| werner helicase interacting protein [Aedes aegypti]
 gi|108884173|gb|EAT48398.1| werner helicase interacting protein [Aedes aegypti]
          Length = 560

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 64/330 (19%), Positives = 124/330 (37%), Gaps = 30/330 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA- 75
                +RP  L ++ GQ +      V     +     +  ++  GPPG GKTTLA ++A 
Sbjct: 137 PLAEKMRPDELSDYIGQEQIIGKNTVLRTLFEK--NTIPSMILWGPPGCGKTTLAHIIAA 194

Query: 76  --RELGVNFRSTSGPVIAKAGDLAALLT------NLEDRDVLFIDEIHRLSIIVEEILYP 127
             ++ G          ++   D+   +         + + ++F+DEIHR + + ++I  P
Sbjct: 195 HCKKHGSMKFVKLSATMSGVNDVKEAVKLAKNDLAFKRKTIMFMDEIHRFNKLQQDIFLP 254

Query: 128 AMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
            +E   + L+    E PS       LSR  +I            +  R     +   +E 
Sbjct: 255 HVESGTITLIGATTENPSFSLNSALLSRCRVIVLEKLGVEAVMKILKRALPQYKTVMFEN 314

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
            +    ++    +  + ++ E    +A    G  RIA   L+   +       +      
Sbjct: 315 NNRVPDIRGLPFVPRMMISAETIRWLAEICDGDARIALNSLQLALNTVAARQDEE----- 369

Query: 246 ADAALLRLAID--KMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
            ++AL R+++D  K G  +  L Y          G    E ISA     R + ++    +
Sbjct: 370 -ESALKRISLDEIKEGIKKSHLMY-------DRKGDQHYELISALHKSIRASDDNAALYW 421

Query: 304 MIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
             +       PR   R ++ +A + +G+  
Sbjct: 422 CSRMLVSGEDPRYLVRRMIRMASEDIGLAD 451


>gi|229820501|ref|YP_002882027.1| AAA ATPase central domain protein [Beutenbergia cavernae DSM 12333]
 gi|229566414|gb|ACQ80265.1| AAA ATPase central domain protein [Beutenbergia cavernae DSM 12333]
          Length = 484

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 81/342 (23%), Positives = 126/342 (36%), Gaps = 57/342 (16%)

Query: 12  VSQEDADIS-LLRPRTLEEFTGQVEACS---NLKVFIEAAKARAEALDHVLFVGPPGLGK 67
            ++ DA ++  +RP +  E  GQ         L+   E A   A     V+  GPPG GK
Sbjct: 16  AARPDAPLAVRMRPASASEVVGQEHLLEPGAPLRRLTEPADPGAPPPSSVILWGPPGTGK 75

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSII 120
           TTLA ++A   G  F   S  V A   D+ A++ +   R        VLF+DE+HR S  
Sbjct: 76  TTLAYLIAHASGRRFVELSA-VTAGVRDVRAVIDDARRRLAGGGVETVLFVDEVHRFSKT 134

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++ L P++E+  + L+    E PS   +   LSR  L+            L DR     
Sbjct: 135 QQDALLPSVENRWVTLVAATTENPSFSVISPLLSRSLLLTLRPLTEADVARLVDR----- 189

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
                         +RG       + D+A   +   + G  R A  +L      A +  A
Sbjct: 190 ----------ALDDERGLAG-RYTLDDDARAHLLRLAGGDARKALTILEAAAGTAALPGA 238

Query: 239 KTITREIADAALLR------LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEP 292
               R I   A+ R      +  D+ G    D+                    SA +   
Sbjct: 239 GDDARGIDLEAVERAVDVAAVRYDRDGDQHYDV-------------------TSAFIKSM 279

Query: 293 RDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           R +  D    Y+ +       PR   R ++  A + +G+  P
Sbjct: 280 RGSDVDAALHYLARMVAAGEDPRFIARRIVIAASEEVGMADP 321


>gi|261337911|ref|ZP_05965795.1| ATPase, AAA family [Bifidobacterium gallicum DSM 20093]
 gi|270277391|gb|EFA23245.1| ATPase, AAA family [Bifidobacterium gallicum DSM 20093]
          Length = 460

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 78/364 (21%), Positives = 132/364 (36%), Gaps = 68/364 (18%)

Query: 2   MDREGLLSRNVSQE--DADISLLRPRTLEEFTGQVEACSNLKVFIE----AAKARAEALD 55
           MD++   +    +         +RP TL+E  GQ     +          A+     A  
Sbjct: 1   MDQDLFAAAEAPESMVRPLAVRMRPHTLDEVIGQQRVLQSGSPLRRLADPASLGSLTAPS 60

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DV 108
            ++  GPPG+GKTTLA +VA++ G  F   S  V +   D+ A+L    +R        V
Sbjct: 61  SIILFGPPGVGKTTLATIVAQQSGRAFEELSA-VTSGVKDVRAVLARAHERLVSSGQETV 119

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLL 166
           LFIDE+HR S   ++ L P++E+  +  +    E PS   +K  LSR  ++   +     
Sbjct: 120 LFIDEVHRFSKSQQDALLPSVENRDITFIAATTENPSFSVIKPLLSRSVVVKLESLDHDE 179

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
              +  R                 IV        ++++D+A  +I   + G  R +  +L
Sbjct: 180 LEDVIRR----------------AIVSEHGLNETVSISDQAVEDIIRMAGGDARKSLTIL 223

Query: 227 RRVR-----DFAEVAHAKTITREIADAALLR----------LAIDKMGFDQLDLRYLTMI 271
                    +        T ++E       +          +  DK G D  D+      
Sbjct: 224 EAAAGALDDESEAQRGNGTTSQEGIPEITAQIVAQVMDVATIRYDKQGDDHYDVA----- 278

Query: 272 ARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGI 329
                         SA +   R +  D    Y+ +       PR   R +M  A + +G+
Sbjct: 279 --------------SAFIKSMRGSDVDASLHYLARMIRAGEDPRFIARRIMIAAAEEVGM 324

Query: 330 DIPH 333
             P 
Sbjct: 325 AAPQ 328


>gi|296394109|ref|YP_003658993.1| ATPase AAA [Segniliparus rotundus DSM 44985]
 gi|296181256|gb|ADG98162.1| AAA ATPase central domain protein [Segniliparus rotundus DSM 44985]
          Length = 479

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 70/322 (21%), Positives = 115/322 (35%), Gaps = 42/322 (13%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            +RPR + E  GQ       +           A   V+  GPPG GKTT+A +++   G 
Sbjct: 44  RMRPRDVAEVLGQDHLLGPGRPLRRLVDGHGVA--SVVLHGPPGTGKTTIASLLSAATGR 101

Query: 81  NFRSTSGPVIAKAGDLAALLTN------LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
            F + S  + A   ++  ++ +         R VLFIDE+HR S   ++ L  A+E   +
Sbjct: 102 EFVALSA-LTAGVKEVREVIEDSRMRLAAGRRTVLFIDEVHRFSKTQQDALLAAVEHQIV 160

Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            L+    E P    V   LSR  ++          + L  R                   
Sbjct: 161 LLVAATTENPGFAVVSPLLSRSLVLELRPLAREDLDALISR---------------ALED 205

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           +RG     + + D+A   +   + G  R     L    D A+       T E++      
Sbjct: 206 ERGYGG-AVRLCDQAREHVLRVAGGDARRMLTALEAAVDLAQAEDEGAQTWEVS------ 258

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
                   +Q+       + R    G    + +SA +   R +  D    Y+ +      
Sbjct: 259 -------LEQVTASLDEAMVRYDRDGDQHYDVVSAFIKSIRGSDVDAALHYLARMVVAGE 311

Query: 313 TPR--GRLLMPIAWQHLGIDIP 332
            PR   R LM  A + +G+  P
Sbjct: 312 DPRFIARRLMIHASEDVGMADP 333


>gi|77409126|ref|ZP_00785840.1| ATPase, AAA family [Streptococcus agalactiae COH1]
 gi|77172254|gb|EAO75409.1| ATPase, AAA family [Streptococcus agalactiae COH1]
          Length = 422

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 69/325 (21%), Positives = 116/325 (35%), Gaps = 42/325 (12%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           D     +RPR + E  GQ     N K+      A    L  ++  GPPG+GKT++A  +A
Sbjct: 3   DNLALRMRPRNINEVIGQQHLVGNGKIIDRMVAA--NMLSSMILYGPPGIGKTSIASAIA 60

Query: 76  RELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
                 FR+ +  V +K      A         VL +DEIHRL    ++ L P +E+  +
Sbjct: 61  GTTKYAFRTFNATVDSKKRLQEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGNI 120

Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            ++    E P         SR  +            PL +            I+   +  
Sbjct: 121 IMIGATTENPFFSVTPAIRSRVQIFEL--------EPLSNEDIKKA------IQLAISDK 166

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT--REIADAAL 250
           +RG     + + D A   I   + G  R A   L             +     E  + +L
Sbjct: 167 ERGFPFL-VTIDDGALDFIVTATNGDLRSAYNSLDLAVMSTSPNEDGSRHISLETMENSL 225

Query: 251 LRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            R    +DK G    D+  L+ + ++  G  V              ++       +++ G
Sbjct: 226 QRSYITMDKNGDGHYDV--LSALQKSIRGSDV------------NASLHYAAR--LVEAG 269

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIPH 333
            +      R L  IA++ +G+  P 
Sbjct: 270 DLP--SLARRLTIIAYEDIGLANPE 292


>gi|303311419|ref|XP_003065721.1| ATPase, AAA family protein [Coccidioides posadasii C735 delta
           SOWgp]
 gi|240105383|gb|EER23576.1| ATPase, AAA family protein [Coccidioides posadasii C735 delta
           SOWgp]
 gi|320039584|gb|EFW21518.1| AAA family ATPase [Coccidioides posadasii str. Silveira]
          Length = 535

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 71/344 (20%), Positives = 122/344 (35%), Gaps = 69/344 (20%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSN--LKVFIEAAKARAEALDHVLFVGPPGL 65
           +S    +       +RPRTL+E  GQ     N  L+  IEA     + +  ++  G  G 
Sbjct: 115 VSNAFEKAAPLAERMRPRTLDEVCGQELVGQNGVLRGLIEA-----DRVPSMILWGGAGT 169

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLS 118
           GKTT+A+V+A  +G  F   +    +   +   +             + ++F DEIHR S
Sbjct: 170 GKTTIARVIATMVGSRFVEINS-TSSGVAECKKIFAEARNELRLAGRKTIIFCDEIHRFS 228

Query: 119 IIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
              +++    +E  Q+ L+    E PS +     LSR      +                
Sbjct: 229 KSQQDVFLGPVESGQVTLIGATTENPSFKVQNALLSRCRTFTLSK--------------- 273

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAV------TDEAACEIAMRSRGTPRIAGRLLRRVR 230
                    +D+ +I+ R  +L G          +E    +A  + G  R +  LL    
Sbjct: 274 ------LTDDDIISILNRALELEGPNYSPTNLVDEELIRYLAAFADGDARTSLNLLELAM 327

Query: 231 DFAEVAHAKTITREIADAALLRL-AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGL 289
           D ++      +T++     L R    D+ G    D                   TISA  
Sbjct: 328 DLSKRPG---MTKDELKKGLTRTLVYDRAGDQHYD-------------------TISAFH 365

Query: 290 SEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
              R +  D    Y+ +       P    R L+ +A + +G+  
Sbjct: 366 KSIRGSDPDAALYYLARMIQSGEDPLYIARRLIVVASEDVGLAD 409


>gi|183982180|ref|YP_001850471.1| hypothetical protein MMAR_2167 [Mycobacterium marinum M]
 gi|183175506|gb|ACC40616.1| conserved alanine, valine and leucine rich protein [Mycobacterium
           marinum M]
          Length = 452

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 81/339 (23%), Positives = 136/339 (40%), Gaps = 61/339 (17%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
            VS        +RP +L+E  GQ    +         +    A   V+  GPPG GKTTL
Sbjct: 24  EVSAGAPLAVRMRPESLDEVVGQGHLLAPGAPLRRLVEGSGVA--SVILYGPPGSGKTTL 81

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEI 124
           A +++   G  F + S  + A   D+ A++          ++ VLFIDE+HR S   ++ 
Sbjct: 82  AALISHATGRRFEALSA-LSAGVKDVRAVIETARQVLRRGEQTVLFIDEVHRFSKTQQDA 140

Query: 125 LYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           L  A+E+  + L+    E PS   V   LSR                      + ++L+ 
Sbjct: 141 LLSAVENRVVLLVAATTENPSFSVVAPLLSR---------------------SLILQLHP 179

Query: 183 YEIEDLKTIVQRGAKL-----TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
              +D++ +VQR A+        +A+  +A   +   S G  R A   L    + A+ A 
Sbjct: 180 LGADDIRAVVQRAAQDPRGLGGRVAIAPDATDLLVQLSAGDARRALTALEVAAEAAQAAG 239

Query: 238 AKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDA 295
           ++  + EI + +L + A   D+ G    D+                   +SA +   R +
Sbjct: 240 SQV-SVEIIEQSLDKAAVRYDRDGDQHYDV-------------------VSAFIKSVRGS 279

Query: 296 IEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
             D    Y+ +       PR   R LM +A + +G+  P
Sbjct: 280 DVDAALHYLARMLVAGEDPRFVARRLMILASEDIGLADP 318


>gi|315038022|ref|YP_004031590.1| recombination factor protein RarA [Lactobacillus amylovorus GRL
           1112]
 gi|312276155|gb|ADQ58795.1| recombination factor protein RarA [Lactobacillus amylovorus GRL
           1112]
 gi|327183302|gb|AEA31749.1| recombination factor protein RarA [Lactobacillus amylovorus GRL
           1118]
          Length = 434

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 68/322 (21%), Positives = 113/322 (35%), Gaps = 33/322 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+ L+E  GQ       K+     +AR   L  ++  GPPG+GKT++A  +A 
Sbjct: 3   PLAYRMRPKNLDEVVGQQHLIGPGKIIRRMVEAR--LLSSMILYGPPGIGKTSIASAIAG 60

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR  +     K      A    +    VL +DEIHRL    ++ L P +E  Q+ 
Sbjct: 61  STKYAFRKLNAATDGKKQLQQVAEEGKMSGTVVLLLDEIHRLDKTKQDFLLPLLESGQVI 120

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           L+    E P         SR  +           +   DR                   +
Sbjct: 121 LIGATTENPYISISPAIRSRCQIFELKPLSSEDASKAIDR--------------ALADKE 166

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
            G     + +TD+A   +  +  G  R     L      A ++  + +  E  D + + +
Sbjct: 167 NGLGKYNVNLTDDARQLLIEKGNGDLRATLNSLE----LAVLSTKQELKNEHKDDSTILI 222

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY---MIQQGFI 310
              +M            I      G    + +SA     R +  D    Y   +I+ G +
Sbjct: 223 TQKEMADS-----IQMKIQNFDASGDGHYDLVSAFQKSIRGSDTDAALHYLARLIESGDL 277

Query: 311 QRTPRGRLLMPIAWQHLGIDIP 332
                 R L  IA++ +G+  P
Sbjct: 278 ISIC--RRLTVIAYEDIGLANP 297


>gi|227529658|ref|ZP_03959707.1| crossover junction endodeoxyribonuclease [Lactobacillus vaginalis
           ATCC 49540]
 gi|227350448|gb|EEJ40739.1| crossover junction endodeoxyribonuclease [Lactobacillus vaginalis
           ATCC 49540]
          Length = 432

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 66/319 (20%), Positives = 121/319 (37%), Gaps = 37/319 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RPR L E  GQ       K+     KAR   L  ++  GPPG GKT++A  +A 
Sbjct: 3   PLAYRMRPRNLSEVVGQQHLVGPNKIISRMVKAR--MLSSLILYGPPGTGKTSIASAIAG 60

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR  +     K    + A    +    +L +DEIHRL    ++ L P +E+ ++ 
Sbjct: 61  STKYAFRKLNAATDTKKDLQVVAEEAKMSGTVILLLDEIHRLDKSKQDFLLPHLENGRI- 119

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           +++G       + IN +    I + T++  +     +   + +     + E       RG
Sbjct: 120 ILIGATTENPYISINPA----IRSRTQIFPVHPLSIEDMKVAVNRALTDSE-------RG 168

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI--TREIADAALLRL 253
                + +  +A  ++   + G  R A   L       +      I  T  + + ++ + 
Sbjct: 169 LGKMPIKLDQDAEEQLLTATNGDLRSALNGLELAAKSTDPDKDGIIHLTLPVIEESVQKK 228

Query: 254 AI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
           AI  D+ G    D      +   F     G +T +A                +I+ G + 
Sbjct: 229 AIASDRDGDAHYD------VISAFQKSIRGSDTDAALH----------YLARLIEAGDLI 272

Query: 312 RTPRGRLLMPIAWQHLGID 330
                R L+ IA++ +G+ 
Sbjct: 273 SIC--RRLIIIAYEDIGLA 289


>gi|110678756|ref|YP_681763.1| recombination factor protein RarA [Roseobacter denitrificans OCh
           114]
 gi|109454872|gb|ABG31077.1| ATPase, AAA family protein, putative [Roseobacter denitrificans OCh
           114]
          Length = 441

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 75/338 (22%), Positives = 124/338 (36%), Gaps = 58/338 (17%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           +   ++      LLRP++L+E  GQ +  +        +   AE L  ++  GPPG+GKT
Sbjct: 13  TPQHAKTRPLADLLRPQSLDEVIGQEKLLAEDGPL--GSMLAAERLTSLILWGPPGVGKT 70

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVE 122
           T+A+++A    ++F   S  + +   DL  +     DR        LFIDEIHR +    
Sbjct: 71  TIARLLAHRTDLHFEQISA-IFSGVSDLKKVFQAARDRASLGQGTFLFIDEIHRFNKAQL 129

Query: 123 EILYPAMEDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           + L P MED  + +     E PS       LSR  ++            L  R       
Sbjct: 130 DSLLPVMEDGTVTVCGATTENPSFSVNGSVLSRCQVMVLERLDATALARLLARAEAQTGQ 189

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
                               L +TD+A   +   + G  R    L+  VR + +    +T
Sbjct: 190 A-------------------LPLTDDAKSLLCAMADGDGRALLNLVESVRAWPQ---DQT 227

Query: 241 ITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEP-RDAIE 297
            + E     L R A   D+ G                         I++ + +  R +  
Sbjct: 228 YSAEDIAGRLTRRAALHDRAGDGHY--------------------AIASAIQKSIRGSDP 267

Query: 298 DLIEPYMIQQGFIQRTPRG--RLLMPIAWQHLGIDIPH 333
           +    ++ +       PR   R L  IAW+ +G+  P 
Sbjct: 268 EAAIYWVHRALEGGEDPRFILRRLTMIAWEDVGLADPE 305


>gi|196012762|ref|XP_002116243.1| hypothetical protein TRIADDRAFT_30677 [Trichoplax adhaerens]
 gi|190581198|gb|EDV21276.1| hypothetical protein TRIADDRAFT_30677 [Trichoplax adhaerens]
          Length = 478

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 72/335 (21%), Positives = 129/335 (38%), Gaps = 35/335 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACS---NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
                +RP  L ++ GQ +      +L+  IE+       +  ++F GPPG GKTTLA +
Sbjct: 43  PLADKIRPNVLTDYIGQDDVLGGKTSLRSLIESGD-----IHSMIFWGPPGCGKTTLANI 97

Query: 74  VAREL----GVNFRSTSGPV-----IAKAGDLAAL-LTNLEDRDVLFIDEIHRLSIIVEE 123
           +A+       + F   S        + +  D+A    T    + +LF+DEIHR +   ++
Sbjct: 98  IAKSGKSKANMRFIQLSATSSGTQKVREVIDIAQKDRTMFNRQTILFMDEIHRFNKAQQD 157

Query: 124 ILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           +  P +E+  + L+    E PS       LSR  +I            +  +  +    +
Sbjct: 158 VFLPYVENGTIVLIGATTENPSFSLNNALLSRCHVITLQKLSSANVVTIL-KSALNNIED 216

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV-RDFAEVAHAKT 240
           + +++D  T          +   D+A   +     G  R A   L    R    + + + 
Sbjct: 217 YLDLDDFTT-----GNKYKIKADDQALKALGNFCDGDARKALNGLEMAIRSKIIIYNNRD 271

Query: 241 ITREIADAAL--LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
           IT+ I D  L  +    +K   + L   +L    +    G      ISA     R   E+
Sbjct: 272 ITQPIDDERLPTIIAVTEKDVLESLQRSHL----QYDRSGEEHYNIISALHKSMRGGDEN 327

Query: 299 LIEPYMIQQ--GFIQRTPRGRLLMPIAWQHLGIDI 331
               ++ +   G  Q T   R L+  A + +G+  
Sbjct: 328 AAMYWLCRMLKGGEQPTYIARRLIRFASEDVGLAD 362


>gi|212697090|ref|ZP_03305218.1| hypothetical protein ANHYDRO_01655 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675865|gb|EEB35472.1| hypothetical protein ANHYDRO_01655 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 443

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 70/348 (20%), Positives = 130/348 (37%), Gaps = 56/348 (16%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD   L  +   ++ A ++  +RP  +E+F GQ       K+     K  ++ +   +F 
Sbjct: 1   MDLFELNRQRQLEKSAPLADRMRPDNIEDFLGQDHLLGEGKIIRRMIK--SDRIYSSIFY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDE 113
           GPPG+GKTTLA+++++   + F   S  V +   DL   +   +D       + +LFIDE
Sbjct: 59  GPPGVGKTTLAKIISKSTNMAFEKVSA-VASGISDLKKKIEIAKDNLKYENKKTILFIDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++ L P +ED  + L+    E P     K  +SR  +               
Sbjct: 118 IHRFNKSQQDYLLPFVEDSTIILIGATTENPYFEVNKALISRMYVFELKA---------- 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
                      +  +DL  ++        +        +   R     + +    R + +
Sbjct: 168 -----------HTNDDLHKLIGMALTKDKVLQNKNIKIDKDAR-NTLVKFSNGDCRALLN 215

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLR-YLTMIARNF----GGGPVGIETIS 286
             E+A              +    DK G  ++D +  L  I +        G    +TIS
Sbjct: 216 ALEIA--------------IFSQEDKEGIIEVDRQSILNSIQKKISIYDRNGDRHYDTIS 261

Query: 287 AGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           A +   R +  D    Y+ +        +   R ++  A + + +  P
Sbjct: 262 AFIKSMRGSDPDAAIFYLAKMLNSGEDIKFIARRMIIFASEDISLADP 309


>gi|154508869|ref|ZP_02044511.1| hypothetical protein ACTODO_01380 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798503|gb|EDN80923.1| hypothetical protein ACTODO_01380 [Actinomyces odontolyticus ATCC
           17982]
          Length = 447

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 74/331 (22%), Positives = 117/331 (35%), Gaps = 58/331 (17%)

Query: 21  LLRPRTLEEFTGQVEACS---NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
            +RP TL+E  GQ         L+  +    +   A+  V+  GPPG GKTTLA ++AR 
Sbjct: 26  RMRPTTLDEVVGQSHLLGEGAPLRRLLSPGSSDGVAVSSVVLWGPPGTGKTTLAYLIARA 85

Query: 78  LGVNFRSTSG------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            G  F   S        V     D    L +  +  +LF+DE+HR S   ++ L PA+E+
Sbjct: 86  SGRRFVELSAVSSGVSDVRRVVDDARRTLASGGEETILFVDEVHRFSKSQQDSLLPAVEN 145

Query: 132 FQLDLM--VGEGPSARSVKI-----NLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
             + L+    E PS   +        L     + +    GL+   L D  G+  R +   
Sbjct: 146 RWVVLVAATTENPSFSVISPLLSRSLLLTLRPLDSDAIEGLIRRALADERGLAGRFSI-- 203

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
                              TDEA   +   +    R +  LL      A    +  IT  
Sbjct: 204 -------------------TDEAVAGLVRLAGSDARKSLTLLEAAAGVASDDGSGEITVA 244

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
             +AA  +  +        D+   +   ++  G  V                 D    Y+
Sbjct: 245 SVEAAANQALVRWSKDQHYDVA--SAFIKSMRGSDV-----------------DASLHYL 285

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +       PR   R +M  A + +G+  P 
Sbjct: 286 ARMIEAGEDPRFIARRIMIAASEEIGMASPE 316


>gi|21911250|ref|NP_665518.1| recombination factor protein RarA [Streptococcus pyogenes MGAS315]
 gi|28896626|ref|NP_802976.1| recombination factor protein RarA [Streptococcus pyogenes SSI-1]
 gi|21905463|gb|AAM80321.1| putative chromosome segregation helicase [Streptococcus pyogenes
           MGAS315]
 gi|28811880|dbj|BAC64809.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1]
          Length = 422

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 68/326 (20%), Positives = 117/326 (35%), Gaps = 42/326 (12%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            D     +RP+T+ E  GQ       K+     +A    L  ++  GPPG+GKT++A  +
Sbjct: 2   PDHLALRMRPKTISEVIGQKHLVGQGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           A      FR+ +  + +K      A         VL +DEIHRL    ++ L P +E+  
Sbjct: 60  AGTTKYAFRTFNATIDSKKRLQEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGT 119

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + ++    E P         SR  +            PL +            I+   + 
Sbjct: 120 IIMIGATTENPFFSVTPAIRSRVQIFEL--------EPLSNEDIKTA------IQLAISD 165

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT--REIADAA 249
            +RG     + + DEA   I   + G  R A   L             +     E  + +
Sbjct: 166 KERGFPFL-VTIDDEALDFIVTATNGDLRSAYNSLDLAVMSTSPNEDSSRHISLETMENS 224

Query: 250 LLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           L R    +DK G    D+  L+ + +   G  V              ++       +++ 
Sbjct: 225 LQRSYITMDKNGDGHYDV--LSALQKAIRGSDV------------NASLHYAAR--LVEA 268

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
           G +      R L  IA++ +G+  P 
Sbjct: 269 GDLP--SLARRLTIIAYEDIGLANPD 292


>gi|289522162|ref|ZP_06439016.1| replication-associated recombination protein A [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503998|gb|EFD25162.1| replication-associated recombination protein A [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 448

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 76/350 (21%), Positives = 123/350 (35%), Gaps = 65/350 (18%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACS---NLKVFIEAAKARAEALDHVLFV 60
            E   SR    E      +RP  LE+F GQ         L+  +EA +     +   +  
Sbjct: 18  EESKGSREQGLEIPLAERMRPAKLEDFVGQEHLLGKDKPLRRLLEAGQ-----VPSCILY 72

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALL---TNLEDRD----VLFIDE 113
           GPPG GKTTL + +A   G      +  V AK   L  ++    NL+       ++FIDE
Sbjct: 73  GPPGSGKTTLVRAMASVTGRKLFEINA-VTAKVAQLRDVVDTARNLKRSTGKSAIVFIDE 131

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAAT-----TRVGLL 166
           I+  +   +  L P++E   L L+    E P     K  LSR  +             +L
Sbjct: 132 IYHFNKQQQNALLPSVERGDLILVGTTTENPYFEINKTLLSRAIVFELKPLAPGDIEHIL 191

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
              L+D+                   ++G  +  + V ++A   I+  + G  R A   L
Sbjct: 192 FRALRDK-------------------EKGLGMFDVVVDEQAVTFISRAAGGDARQALLRL 232

Query: 227 RRVRDFAEVAHAKTITREI--ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIET 284
             V   +  +  K +T E     A       DK      D+                   
Sbjct: 233 ESVVLASVASGKKRVTLEDVVQLAPKSLQIYDKSSDKHYDI------------------- 273

Query: 285 ISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           ISA +   R +  D    ++ +        R   R ++  A + +G+  P
Sbjct: 274 ISAFIKSMRGSDPDAAVYWLARMVAGGEDIRFIARRMLIFAAEDVGLANP 323


>gi|302343350|ref|YP_003807879.1| ATPase AAA [Desulfarculus baarsii DSM 2075]
 gi|301639963|gb|ADK85285.1| AAA ATPase central domain protein [Desulfarculus baarsii DSM 2075]
          Length = 452

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 74/341 (21%), Positives = 119/341 (34%), Gaps = 43/341 (12%)

Query: 2   MDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M      S NVS   A +   +RPR ++E  GQ       K      +        ++  
Sbjct: 1   MSLFERESGNVSSGVAPLAERMRPRAIDEIVGQNHLLGPGKALRRLLEEGRPI--SLILW 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEI 114
           GPPG GKTTLA+++A+    +F   S  V++   D+   +           R  LF+DEI
Sbjct: 59  GPPGTGKTTLARLLAQLWDTDFTEFSA-VLSGVADVRRAVEEARAKLKGGRRTTLFVDEI 117

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++   P +E   + L+    E PS                +    L+ +PL++
Sbjct: 118 HRFNKSQQDAFLPHVESGVITLVGATTENPSFEVAPA--------LLSRLRVLVLHPLEE 169

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
                I      +E      +RG     + +T EA   +   + G  R     L    + 
Sbjct: 170 DHLALI------LERALADAERGLGGRDVELTPEAKQHMIQAAYGDARRLLGTLEVAVEA 223

Query: 233 AEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEP 292
           A +        +  D AL          D +  R L    R    G      ISA     
Sbjct: 224 APL---GLGGLKRIDQALAE--------DAVGRRML----RYDKAGEEHYNLISALHKSL 268

Query: 293 RDAIEDLIEPYMIQQGFIQRTPRG--RLLMPIAWQHLGIDI 331
           R +  D    ++ +       P    R L   A + +G+  
Sbjct: 269 RGSDVDAALYWLTRMLEAGEDPHFILRRLTRFACEDVGLAD 309


>gi|262370792|ref|ZP_06064116.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
 gi|262314154|gb|EEY95197.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
          Length = 425

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 69/325 (21%), Positives = 115/325 (35%), Gaps = 53/325 (16%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
             LRPR L E  GQ           +        L  ++F GPPG+GKTT+A ++A+ + 
Sbjct: 10  ERLRPRDLSEIIGQDHLLGEQAPLRQMIDQGH--LPSIIFWGPPGVGKTTIALLLAQAID 67

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
             F S S  +     +L  ++ +  D    V+FIDEIHR +   ++ L  A+E  ++ L+
Sbjct: 68  RPFVSLSA-LNTGVKELREIIADGGDLMPPVVFIDEIHRFNKSQQDALLNAVEKGKITLI 126

Query: 138 --VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ---DRFGIPIRLNFYEIEDLKTIV 192
               E PS       LSR  +             L     +    ++  + +IE+ + +V
Sbjct: 127 GATTENPSFEVNSALLSRCQVYTLNALDADAIQTLLLQAIKNDPFLKERYIQIEEFEALV 186

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           Q  A                       R A  L+  +    E      +T  +      +
Sbjct: 187 QFAAG--------------------DARKALNLIELIAGTFEPDVENIVTNAMVVKVAQQ 226

Query: 253 L--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
                DK G    DL                   +SA +   R +  D    +M +    
Sbjct: 227 NIARYDKSGEQHYDL-------------------VSAFIKSIRGSDPDATLYWMARMLKG 267

Query: 311 QRTPR--GRLLMPIAWQHLGIDIPH 333
              P    R ++  A + +G   P+
Sbjct: 268 GEDPVFIARRMLIAASEDIGNSNPN 292


>gi|228475177|ref|ZP_04059903.1| recombination factor protein RarA [Staphylococcus hominis SK119]
 gi|228270788|gb|EEK12190.1| recombination factor protein RarA [Staphylococcus hominis SK119]
          Length = 422

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 68/324 (20%), Positives = 125/324 (38%), Gaps = 42/324 (12%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +   S +RP  + E   Q        +     + +   L  ++F GPPG+GKT++A+ +A
Sbjct: 4   EPLASRMRPTNINEIISQQHLVGPRGIIRRMVETK--KLSSMIFYGPPGIGKTSIAKAIA 61

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
                 FR  +  V     D+  ++   +   + +L +DEIHRL    ++ L P +E+ +
Sbjct: 62  GSTEYKFRQLNA-VTNTKKDMQMIVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGK 120

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + L+      P         SR  +            PL ++            +     
Sbjct: 121 IILIGATTSNPYHAINPAIRSRVQIFELY--------PLDEKDVYQALTRALNDD----- 167

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV-AHAKTITREIADAAL 250
            Q G KL    + ++A    + +S G  R A   L      A+V  + + +T E A   L
Sbjct: 168 -QNGLKLYQPKIDEDALKYFSTQSHGDVRSALNALELAVLSAKVSNNQRHVTLEDAKDCL 226

Query: 251 LRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            + A   DK G    D+  ++   ++  G  V              A+  L    +I+ G
Sbjct: 227 QKGAFISDKDGDMHYDV--MSAFQKSIRGSDV------------NAALHYLAR--LIEAG 270

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIP 332
            +      R L+ I+++ +G+  P
Sbjct: 271 DLPTII--RRLLVISYEDIGLASP 292


>gi|145594367|ref|YP_001158664.1| recombination factor protein RarA [Salinispora tropica CNB-440]
 gi|145303704|gb|ABP54286.1| Recombination protein MgsA [Salinispora tropica CNB-440]
          Length = 477

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 73/334 (21%), Positives = 117/334 (35%), Gaps = 56/334 (16%)

Query: 15  EDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           +DA ++  +RP  L+E  GQ    +      +       A   V+  GPPG GKTT+A +
Sbjct: 9   DDAPLAVRMRPTGLDELIGQDHLRAPGAPLHQ--LVSGAAPMSVILWGPPGSGKTTIAHL 66

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILY 126
           VA      F + S  + A   D+ A++     +        VLFIDE+HR S   ++ L 
Sbjct: 67  VAGATDRRFVAMSA-LNAGVKDVRAVIDAARRQRRAGGPQTVLFIDEVHRFSKTQQDSLL 125

Query: 127 PAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI----PIRL 180
            A+ED  + L+    E P    +   LSR  L+            L  R  +        
Sbjct: 126 AAVEDRTVTLLAATTENPYFSVISPLLSRCVLLTLQPLDDDAVRSLLRRAVVDGRGLGGT 185

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
                E  + +V+  A     A+T   A   +  + G  RI      +  D A V     
Sbjct: 186 PVLAPEAEEHLVRLAAGDVRKALTALEAAAASATAVGARRIDLPTAEQAVDSAAVR---- 241

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
                          D+ G    D+                    SA +   R +  D  
Sbjct: 242 --------------YDRDGDSHYDV-------------------TSAFIKSMRGSDVDAA 268

Query: 301 EPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
             ++ +       PR   R ++  A + +G+  P
Sbjct: 269 LHWLARMLVAGEDPRFIARRMVIFASEDVGMADP 302


>gi|328881155|emb|CCA54394.1| ATPase, AAA family [Streptomyces venezuelae ATCC 10712]
          Length = 452

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 78/351 (22%), Positives = 127/351 (36%), Gaps = 56/351 (15%)

Query: 3   DREGLLSRNVSQEDADIS----LLRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALD 55
           D     + +  ++D   S     +RPRTL+E  GQ       S L+  +           
Sbjct: 6   DLFTAAAEDRQEKDPASSPLAVRMRPRTLDEVVGQQHLLKPGSPLRRLVGDGDGGPAGAS 65

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDV 108
            V+  GPPG+GKTTLA VV++     F   S  + A   ++ A++              V
Sbjct: 66  SVILWGPPGIGKTTLAYVVSKATNKRFVELSA-ITAGVKEVRAVIDGARRAVGGYGKETV 124

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLL 166
           LF+DEIHR S   ++ L PA+E+  + L+    E P    +            +  + L 
Sbjct: 125 LFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYFSII--------SPLLSRSLLLT 176

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
             PL D     +       E       RG     + + ++A   +   + G  R A   L
Sbjct: 177 LEPLTDDDLRGLMARALTGE-------RGLGG-AVTLPEDAEAHLLRVAGGDARRALTAL 228

Query: 227 RRVRDFAEVAHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIET 284
                 A       IT +  +  + R A   D+ G    D+   + + ++  G  V    
Sbjct: 229 EAAAGAAIAKGEPEITLQTVEETVDRAAVKYDRDGDQHYDVA--SALIKSIRGSDV---- 282

Query: 285 ISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                        D    Y+ +       PR   R LM  A + +G+  P+
Sbjct: 283 -------------DAALHYLARMIEAGEDPRFIARRLMISASEDIGLADPN 320


>gi|15675782|ref|NP_269956.1| recombination factor protein RarA [Streptococcus pyogenes M1 GAS]
 gi|13623007|gb|AAK34677.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS]
          Length = 422

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 68/326 (20%), Positives = 118/326 (36%), Gaps = 42/326 (12%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            D     +RP+T+ E  GQ       K+     +A    L  ++  GPPG+GKT++A  +
Sbjct: 2   PDHLALRMRPKTISEVIGQKHLVGEGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           A      FR+ +  + +K      A         VL +DEIHRL    ++ L P +E+  
Sbjct: 60  AGTTRYAFRTFNATIDSKKRLQEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGT 119

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + ++    E P         SR  +            PL +            I+   + 
Sbjct: 120 IIMIGATTENPFFSVTPAIRSRVQIFEL--------EPLSNEDIKTA------IQLAISD 165

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT--REIADAA 249
            +RG     + + DEA   I   + G  R A   L             +     E  + +
Sbjct: 166 KERGFPFL-VTIDDEALDFIVTATNGDLRSAYNSLDLAVMSTSPNEDGSRHISLETMENS 224

Query: 250 LLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           L R    +DK G    D+  L+ + ++  G  V              ++       +++ 
Sbjct: 225 LQRSYITMDKNGDGHYDV--LSALQKSIRGSDV------------NASLHYAAR--LVEA 268

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
           G +      R L  IA++ +G+  P 
Sbjct: 269 GDLP--SLARRLTIIAYEDIGLANPD 292


>gi|314938563|ref|ZP_07845847.1| recombination factor protein RarA [Enterococcus faecium TX0133a04]
 gi|314940908|ref|ZP_07847814.1| recombination factor protein RarA [Enterococcus faecium TX0133C]
 gi|314948071|ref|ZP_07851473.1| recombination factor protein RarA [Enterococcus faecium TX0082]
 gi|314952045|ref|ZP_07855068.1| recombination factor protein RarA [Enterococcus faecium TX0133A]
 gi|314991926|ref|ZP_07857381.1| recombination factor protein RarA [Enterococcus faecium TX0133B]
 gi|314995184|ref|ZP_07860298.1| recombination factor protein RarA [Enterococcus faecium TX0133a01]
 gi|313590593|gb|EFR69438.1| recombination factor protein RarA [Enterococcus faecium TX0133a01]
 gi|313593510|gb|EFR72355.1| recombination factor protein RarA [Enterococcus faecium TX0133B]
 gi|313595835|gb|EFR74680.1| recombination factor protein RarA [Enterococcus faecium TX0133A]
 gi|313600266|gb|EFR79109.1| recombination factor protein RarA [Enterococcus faecium TX0133C]
 gi|313642120|gb|EFS06700.1| recombination factor protein RarA [Enterococcus faecium TX0133a04]
 gi|313645487|gb|EFS10067.1| recombination factor protein RarA [Enterococcus faecium TX0082]
          Length = 459

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 67/330 (20%), Positives = 115/330 (34%), Gaps = 41/330 (12%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
                +      +RPRT++E  GQ       K+      AR   L  ++  GPPG GKT+
Sbjct: 28  EENPMQQPLAYRMRPRTIDEVVGQQHLVGEGKIIRRMVDAR--MLSSMILYGPPGTGKTS 85

Query: 70  LAQVVARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           +A  +A      FR  +    +K    + A    +    +L +DE+HRL    ++ L P 
Sbjct: 86  IASAIAGSTNYAFRMLNAATDSKKDLQVVAEEAKMSGTVILLLDEVHRLDKTKQDFLLPH 145

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           +E  ++ L+    E P         SR  +            PL +      +     +E
Sbjct: 146 LESGRIILIGATTENPYITINPAIRSRTQIFEV--------KPLTE------QDIQLAVE 191

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI--TRE 244
                 +RG     + + ++A   ++  + G  R A   L              I  T  
Sbjct: 192 HALRDKERGLGQQAIQLDEDALLHLSRATNGDLRSALNGLELATLSTPSDKEGRIHLTLS 251

Query: 245 IADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           I +  + R A   DK G    D      +   F     G +  +A               
Sbjct: 252 IIEECVQRKALTHDKNGDAHYD------VISAFQKSIRGSDVDAALH----------YLA 295

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
            +++ G +      R LM I ++ +G+  P
Sbjct: 296 RLVEAGDLASIC--RRLMVIGYEDIGLGNP 323


>gi|227891074|ref|ZP_04008879.1| crossover junction endodeoxyribonuclease [Lactobacillus salivarius
           ATCC 11741]
 gi|227866948|gb|EEJ74369.1| crossover junction endodeoxyribonuclease [Lactobacillus salivarius
           ATCC 11741]
          Length = 416

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 67/314 (21%), Positives = 126/314 (40%), Gaps = 37/314 (11%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ +++  GQ       K+     +A+   L  ++  GPPG GKT++A  +A      
Sbjct: 1   MRPKNIDDVVGQQHLVGPGKIIRRMVEAK--LLSSMILYGPPGTGKTSIASAIAGSTKYA 58

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
           FR  +    +K   +            +L +DEIHRL+   ++ L P +ED  + +++G 
Sbjct: 59  FRKMNAATDSKKKLEQVVEEAKFSGTVILLLDEIHRLTKPKQDFLLPHLEDGHI-ILIGA 117

Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
                 + IN +    I + T++  +    +D     I     + +D       G     
Sbjct: 118 TTENPYISINPA----IRSRTQIFEVHPLNEDDIIQAINRAITDKDD-------GLGELP 166

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK--TITREIADAALLRLA--ID 256
           L + D+A  ++A+ + G  R A   L                +T EI +  + R A   D
Sbjct: 167 LQINDDAMHQLAIATHGDLRSALNALELAAKSTPKNSEGNIVLTLEIIEECMQRKALVQD 226

Query: 257 KMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRG 316
           K G    D+  ++ + ++  G  V              A+  L    +I+   +    R 
Sbjct: 227 KDGDAHYDV--ISALQKSIRGSDVDA------------ALHYLAR--LIEAEDLPSISR- 269

Query: 317 RLLMPIAWQHLGID 330
           RL+  IA++ +G+ 
Sbjct: 270 RLIT-IAYEDIGLA 282


>gi|332977179|gb|EGK13978.1| replication-associated recombination protein A [Psychrobacter sp.
           1501(2011)]
          Length = 438

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 73/346 (21%), Positives = 126/346 (36%), Gaps = 64/346 (18%)

Query: 9   SRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           S N+   D  ++  +RP+TLEE  GQ    S        +      L  ++  G  G+GK
Sbjct: 5   STNLPYSDTPLAQRMRPKTLEEVIGQNHLLSPGTPIR--SFVDHGHLPSLILHGEAGIGK 62

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR---------DVLFIDEIHRLS 118
           TT+A ++A  +G  F   S  +      L  +L                V+FIDEIHR +
Sbjct: 63  TTIAMLLADAVGRPFYPLSA-INTGVKQLREVLDAGSKPGQGGLEFAAPVVFIDEIHRFN 121

Query: 119 IIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
              ++ L  A+E  ++ L+    E PS       LSR  +                    
Sbjct: 122 KAQQDALLGAVESGEITLIGATTENPSFSVNNALLSRCQVYRL----------------- 164

Query: 177 PIRLNFYEIEDLKTIVQRGAK----LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
                    E ++ ++QR       L+ L +  EA  +IA  ++G  R +  LL      
Sbjct: 165 ----EPLTEEQIEQLLQRAISEDEFLSKLDIQLEATPQIAKLAQGDARKSLNLLELAVQA 220

Query: 233 AEVAHAKTITREIADAALLR---LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGL 289
           ++ +    +  +   +++ +      DK G    D+                   ISA +
Sbjct: 221 SDHSQQPIVINDALLSSVAQTALQRYDKDGDQHYDI-------------------ISAMI 261

Query: 290 SEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
              R +  D    +M +       P    R L+ +A + +G   P+
Sbjct: 262 KSVRGSDPDAALYWMARMLVAGEPPEYIARRLVILASEDIGNANPN 307


>gi|257784257|ref|YP_003179474.1| AAA ATPase central domain-containing protein [Atopobium parvulum
           DSM 20469]
 gi|257472764|gb|ACV50883.1| AAA ATPase central domain protein [Atopobium parvulum DSM 20469]
          Length = 443

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 79/348 (22%), Positives = 129/348 (37%), Gaps = 46/348 (13%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M      + R   + +A ++  +RP TL+ + GQ +A        +A +   + L  VL 
Sbjct: 1   MDTLFSGIERAAKKANAPLAARMRPTTLDGYVGQEDAVGPGSWLRKAIE--HDTLSSVLL 58

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFID 112
            GP G GKTTLA+++A      F   S  +     DL   +   E        R +LFID
Sbjct: 59  YGPAGTGKTTLARIIAHTTHAEFVEVSA-ITGTVKDLRREIEAAESRLLTAGRRTILFID 117

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           EIHR +   ++ L  A+ED  + L+    E P        +SR  ++          + L
Sbjct: 118 EIHRFTRSQQDALLHAVEDRIVVLIGATTENPYFEVNSALISRSRVVEL--------HAL 169

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR--- 227
            D     +     E ED       GA +      ++A  EI   + G  R A   L    
Sbjct: 170 SDNAIDELIQRALESEDGLA----GAFVL----EEDARKEIVTLAGGDGRAALTSLELAS 221

Query: 228 RVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISA 287
           ++ D  E A  K     +     +  A  + G                  G +  + ISA
Sbjct: 222 QMVDVPESADGKASEPLVITKQNVLEANPRRGLP------------YDKAGDMHYDIISA 269

Query: 288 GLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +   R +  D    ++ +       P+   R +M +A + +G   P 
Sbjct: 270 FIKSMRGSDPDAALYWLARMIDAGEDPKFIARRIMILASEDIGNADPQ 317


>gi|298346857|ref|YP_003719544.1| crossover junction endodeoxyribonuclease ATPase [Mobiluncus
           curtisii ATCC 43063]
 gi|315655402|ref|ZP_07908302.1| replication-associated recombination protein A [Mobiluncus curtisii
           ATCC 51333]
 gi|298236918|gb|ADI68050.1| crossover junction endodeoxyribonuclease ATPase [Mobiluncus
           curtisii ATCC 43063]
 gi|315490342|gb|EFU79967.1| replication-associated recombination protein A [Mobiluncus curtisii
           ATCC 51333]
          Length = 445

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 78/348 (22%), Positives = 126/348 (36%), Gaps = 53/348 (15%)

Query: 2   MDREGLLS------RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALD 55
           MD    LS           +      +RPR +EE  GQ    +         +   E   
Sbjct: 1   MDLFDSLSDTGKGVPEFRPDAPLAVRMRPRNVEELVGQSHLLAPNSPLQRLLRGDTEMTS 60

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DV 108
            V+  GPPG GKTTLA +VA+  G ++   S  + A   ++  ++   + R        +
Sbjct: 61  SVILYGPPGTGKTTLAYLVAQAGGRDYAQLSA-INAGVKEVREVINAAKQRLSLSGQETI 119

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLL 166
           LF+DE+HR S   ++ L PA+E+  + L+    E P+   +            +  + L 
Sbjct: 120 LFLDEVHRFSKSQQDSLLPAVENRWVILVAATTENPAFSVI--------SPLLSRSLLLT 171

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
             PL +R    I       E       RG       +T +A   +   +    R A  LL
Sbjct: 172 LQPLTNRDIEIIMDRALADE-------RGLGG-KYTLTPDARESLIRLAGADGRKALTLL 223

Query: 227 RRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETIS 286
                 A+   A  IT E   AA    A+ + G D+                    +  S
Sbjct: 224 EAAAGGADSRAASEIT-EDDVAAAADTAVVRYGIDEH------------------YDVAS 264

Query: 287 AGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           A +   R +  D    Y+ +       PR   R ++  A + +G+  P
Sbjct: 265 AFIKSMRGSDPDAALHYLARMIKAGEDPRFIARRVVIAAAEDVGLADP 312


>gi|239637567|ref|ZP_04678539.1| recombination factor protein RarA [Staphylococcus warneri L37603]
 gi|239596785|gb|EEQ79310.1| recombination factor protein RarA [Staphylococcus warneri L37603]
          Length = 423

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 72/325 (22%), Positives = 125/325 (38%), Gaps = 42/325 (12%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +   S +RP  ++E   Q        +       +   L  ++F GPPG+GKT++A+ +A
Sbjct: 4   EPLASRMRPINIDEIISQQHLVGPTGIIRRMVDTK--RLSSMIFYGPPGIGKTSIAKAIA 61

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
                 FR  +  V     D+  ++   +   + +L +DEIHRL    ++ L P +E+ +
Sbjct: 62  GSTQYKFRQLNA-VTNTKKDMQMVVDEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGK 120

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + L+      P         SR  +            PL D           E +     
Sbjct: 121 IVLIGATTSNPYHAINPAIRSRAQIFELY--------PLYDNDIRLALNRALEDD----- 167

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR-RVRDFAEVAHAKTITREIADAAL 250
            QRG K     V D+A    + +S+G  R A   L   V    E    + IT + A   L
Sbjct: 168 -QRGLKSYTPEVDDDAMTYFSTQSQGDVRSALNALELAVLSATEEDGQRHITLQDAKDCL 226

Query: 251 LRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            + A   DK G    D+  ++   ++  G  V              A+  L    +I+ G
Sbjct: 227 QKGAFVSDKDGDMHYDV--MSAFQKSIRGSDV------------NAALHYLAR--LIEAG 270

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIPH 333
            +      R L+ I+++ +G+  P+
Sbjct: 271 DLPTIV--RRLLVISYEDVGLASPN 293


>gi|223044087|ref|ZP_03614126.1| ATPase, AAA family [Staphylococcus capitis SK14]
 gi|222442481|gb|EEE48587.1| ATPase, AAA family [Staphylococcus capitis SK14]
          Length = 425

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 69/324 (21%), Positives = 126/324 (38%), Gaps = 42/324 (12%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +   S +RP  ++E   Q        +     + +   L  ++F GPPG+GKT++A+ ++
Sbjct: 7   EPLASRMRPMNIDEIISQQHLVGPKGIIRRMVETK--RLSSMIFYGPPGIGKTSIAKAIS 64

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
                 FR  +  V     D+  ++   +   + +L +DEIHRL    ++ L P +E+ +
Sbjct: 65  GSTQFKFRQLNA-VTNTKKDMQMVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGK 123

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + L+      P         SR  +            PL D            ++     
Sbjct: 124 IVLIGATTSNPYHAINPAIRSRAQIFELY--------PLDD------HDVRIALDRAIED 169

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE-VAHAKTITREIADAAL 250
             RG K     V ++A    + +S+G  R A   L      AE V + + IT + A   L
Sbjct: 170 SDRGLKSYHPIVDEDAMEYFSTQSQGDVRSALNALELAVLSAEVVKNQRHITLDDAKDCL 229

Query: 251 LRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            + A   DK G    D+  ++   ++  G  V              A+  L    +I+ G
Sbjct: 230 QKGAFVSDKDGDMHYDV--MSAFQKSIRGSDV------------NAALHYLAR--LIESG 273

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIP 332
            +      R L+ I+++ +G+  P
Sbjct: 274 DLPTIV--RRLLVISYEDVGLASP 295


>gi|118473523|ref|YP_887339.1| recombination factor protein RarA [Mycobacterium smegmatis str. MC2
           155]
 gi|118174810|gb|ABK75706.1| AAA ATPase, central region [Mycobacterium smegmatis str. MC2 155]
          Length = 447

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 82/337 (24%), Positives = 128/337 (37%), Gaps = 57/337 (16%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGL 65
           +  V         +RP  L+E  GQ       S L+  +E + A       V+  GPPG 
Sbjct: 22  TGAVGPSSPLAVRMRPAGLDEVVGQSHLLQAGSPLRRLVEGSGAA-----SVILYGPPGT 76

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSI 119
           GKTTLA ++++  G  F + S  + A   ++ A++           + VLFIDE+HR S 
Sbjct: 77  GKTTLASLISQATGRRFEALSA-LTAGVKEVRAVIDTARRAAVHGQQTVLFIDEVHRFSK 135

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             ++ L  A+E+  + L+    E PS   V   LSR  ++            +  R    
Sbjct: 136 TQQDALLAAVENRVVLLVAATTENPSFSVVAPLLSRSLILQLQPLTPADIEAVLRRAITD 195

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                          +RG     + VTDEA   I   S G  R A   L    +  E   
Sbjct: 196 ---------------ERGLGG-RVEVTDEAVDLIVQLSAGDARRALTALEVAAEPGERVT 239

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
            +TI + +  AA   +  D+ G    D+                   +SA +   R +  
Sbjct: 240 VETIEQSLDKAA---VRYDRDGDQHYDV-------------------VSAFIKSVRGSDV 277

Query: 298 DLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           D    Y+ +       PR   R LM +A + +G+  P
Sbjct: 278 DAALHYLARMLVAGEDPRFVARRLMILASEDIGMADP 314


>gi|71911512|ref|YP_283062.1| recombination factor protein RarA [Streptococcus pyogenes MGAS5005]
 gi|71854294|gb|AAZ52317.1| ATPase, AAA family [Streptococcus pyogenes MGAS5005]
          Length = 422

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 68/326 (20%), Positives = 118/326 (36%), Gaps = 42/326 (12%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            D     +RP+T+ E  GQ       K+     +A    L  ++  GPPG+GKT++A  +
Sbjct: 2   PDHLALRMRPKTISEVIGQKHLVGEGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           A      FR+ +  + +K      A         VL +DEIHRL    ++ L P +E+  
Sbjct: 60  AGTTRYAFRTFNATIDSKKRLQEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGT 119

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + ++    E P         SR  +            PL +            I+   + 
Sbjct: 120 IIMIGATTENPFFSVTPAIRSRVQIFEL--------EPLSNEDIKTA------IQLAISD 165

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT--REIADAA 249
            +RG     + + DEA   I   + G  R A   L             +     E  + +
Sbjct: 166 KERGFPFL-VTIDDEALDFIVTATNGDLRSAYNSLDLAVMSTSPNEDGSRHISLETMENS 224

Query: 250 LLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           L R    +DK G    D+  L+ + ++  G  V              ++       +++ 
Sbjct: 225 LQRSYITMDKNGDGHYDV--LSALQKSIRGSDV------------NASLHYAAR--LVEA 268

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
           G +      R L  IA++ +G+  P 
Sbjct: 269 GDLP--SLARRLTIIAYEDIGLANPD 292


>gi|307702352|ref|ZP_07639310.1| ATPase family associated with various cellular activities (AAA)
           family protein [Streptococcus oralis ATCC 35037]
 gi|307624155|gb|EFO03134.1| ATPase family associated with various cellular activities (AAA)
           family protein [Streptococcus oralis ATCC 35037]
          Length = 423

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 68/326 (20%), Positives = 116/326 (35%), Gaps = 42/326 (12%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            D     +RP+T+++  GQ       K+     +A    L  ++  GPPG+GKT++A  +
Sbjct: 2   PDNLALRMRPKTIDQVIGQEHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           A      FR+ +  V +K      A         VL +DEIHRL    ++ L P +E   
Sbjct: 60  AGTTKYAFRTFNATVDSKKRLQEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGL 119

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + ++    E P         SR  +                            I+   T 
Sbjct: 120 VIMIGATTENPFFSVTPAIRSRVQIFELEPLANQDVKE--------------AIQIALTN 165

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI--TREIADAA 249
            +RG     + +  +A   IA  + G  R A   L                 T +I + +
Sbjct: 166 PERGFD-FPVELDGDALDFIATSTNGDLRSAFNSLDLAVLSTPENDNGIRHITLDIMENS 224

Query: 250 LLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           L R    +DK G    D+  L+ + ++  G  V              ++       +I+ 
Sbjct: 225 LQRSYITMDKDGDGHYDV--LSALQKSIRGSDVDA------------SLHYAAR--LIEA 268

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
           G +      R L  IA++ +G+  P 
Sbjct: 269 GDLP--SLARRLTVIAYEDIGLANPE 292


>gi|296185466|ref|ZP_06853876.1| recombination factor protein RarA [Clostridium carboxidivorans P7]
 gi|296050300|gb|EFG89724.1| recombination factor protein RarA [Clostridium carboxidivorans P7]
          Length = 421

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 64/335 (19%), Positives = 122/335 (36%), Gaps = 59/335 (17%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +   + +RP+ L+E  GQ       K+  +   +    L +++F GPPG GKTT+A ++A
Sbjct: 2   NPLANKIRPKNLDEVIGQKHLLGEGKILQDMISSGH--LMNMIFYGPPGTGKTTVANIIA 59

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLE-----DRDVLFIDEIHRLSIIVEEILYPAME 130
              G  F   +    +   D+  ++ +L      +  +L+IDEIH  +  +++ L   +E
Sbjct: 60  SATGKKFYKLNATTDS-LKDIKDIIKDLNTIMGYNGVILYIDEIHHFTKRIQQSLLEFIE 118

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + Q+ L+    E P     K  LSR                      I +       ED+
Sbjct: 119 NGQITLIGSTTENPYFYIFKAILSR---------------------SIVLEFKKLTKEDI 157

Query: 189 KTIVQRGAKLTG-------LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
              ++R  +L         ++  + A   +     G  R A  +L  +     +   K  
Sbjct: 158 VKGLKRALELIKDDFPGKIISYDEAALDYMGELCEGDLRRALNILELILYSNSLREDKVH 217

Query: 242 TREIADAALLRL---AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
               +     +      D+ G    D   L+   ++  G       +  G+         
Sbjct: 218 ITVDSVEKFSQKKILNYDRDGDSHYD--ILSAFQKSIRGSDANAAILYLGM--------- 266

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
                +I+ G +      R L+ IA + +G+  P 
Sbjct: 267 -----LIKAGDLASIC--RRLLVIASEDVGLAYPQ 294


>gi|293192677|ref|ZP_06609631.1| ATPase, AAA family [Actinomyces odontolyticus F0309]
 gi|292820184|gb|EFF79181.1| ATPase, AAA family [Actinomyces odontolyticus F0309]
          Length = 447

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 74/326 (22%), Positives = 115/326 (35%), Gaps = 48/326 (14%)

Query: 21  LLRPRTLEEFTGQVEACS---NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
            +RP TL+E  GQ         L+  +    +   A+  V+  GPPG GKTTLA ++AR 
Sbjct: 26  RMRPTTLDEVVGQSHLLGEGAPLRRLLSPGSSDGVAVSSVVLWGPPGTGKTTLAYLIARA 85

Query: 78  LGVNFRSTSG------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            G  F   S        V     D    L +     +LF+DE+HR S   ++ L PA+E+
Sbjct: 86  SGRRFVELSAVSSGVSDVRRVVDDARRTLASGGQETILFVDEVHRFSKSQQDSLLPAVEN 145

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             + L+    E PS   +            +  + L   PL       +       E   
Sbjct: 146 RWVVLVAATTENPSFSVISP--------LLSRSLLLTLRPLDSDAIEGLIRRALADE--- 194

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
               RG      ++TDEA   +   +    R +  LL      A    +  IT    +AA
Sbjct: 195 ----RGLA-RRFSITDEAVAGLVRLAGSDARKSLTLLEAAAGVASDDGSGEITVASVEAA 249

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
             +  +        D+                    SA +   R +  D    Y+ +   
Sbjct: 250 ANQALVRWSKDQHYDVA-------------------SAFIKSMRGSDVDASLHYLARMIE 290

Query: 310 IQRTPR--GRLLMPIAWQHLGIDIPH 333
               PR   R +M  A + +G+  P 
Sbjct: 291 AGEDPRFIARRIMIAASEEIGMAAPE 316


>gi|261199858|ref|XP_002626330.1| AAA family ATPase [Ajellomyces dermatitidis SLH14081]
 gi|239594538|gb|EEQ77119.1| AAA family ATPase [Ajellomyces dermatitidis SLH14081]
          Length = 543

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 73/342 (21%), Positives = 123/342 (35%), Gaps = 67/342 (19%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEAC--SNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           S  +         +RP+TL++  GQ        L+  IE      + +  ++  G  G G
Sbjct: 121 SNALKNAAPLAERMRPQTLDDVCGQELVGPSGVLRGLIE-----QDRVPSMILWGGAGTG 175

Query: 67  KTTLAQVVARELGVNFRSTSGPV--IAKAGDLAALLTN----LEDRDVLFIDEIHRLSII 120
           KTT+A+V+A+ +G  F   +     IA+   L A   N       + +LF DEIHR S  
Sbjct: 176 KTTIARVIAKMVGSRFVEINSTNSGIAEWKKLFAEAKNELSLSGKKTILFCDEIHRFSKS 235

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            +++    +E  Q+  +    E PS+R     LSR                         
Sbjct: 236 QQDVFLGPVESGQITFIGATTENPSSRIQNALLSRCRTFTL------------------- 276

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAV------TDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
                 +E++ +I+ R  ++ G          DE    +A  + G  R +  LL    D 
Sbjct: 277 --AKLTVENIVSILNRALEVEGSNYSPSPLVDDELIKYLAAFADGDARTSLNLLELTMDL 334

Query: 233 AEVAHAKTITREIADAALLRL-AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
           +       +T+E    +L +    D++G    D                   TISA    
Sbjct: 335 SRREG---MTKEDLKKSLTKTLVYDRVGDQHYD-------------------TISAFHKS 372

Query: 292 PRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
            R    D    Y+ +       P    R L+ +A + +G+  
Sbjct: 373 IRGNDPDAALYYLARMIQSGEDPLYIARRLIVVASEDIGLAD 414


>gi|94989334|ref|YP_597435.1| recombination factor protein RarA [Streptococcus pyogenes MGAS9429]
 gi|94993223|ref|YP_601322.1| recombination factor protein RarA [Streptococcus pyogenes MGAS2096]
 gi|94542842|gb|ABF32891.1| ATPase, AAA family [Streptococcus pyogenes MGAS9429]
 gi|94546731|gb|ABF36778.1| ATPase, AAA family [Streptococcus pyogenes MGAS2096]
          Length = 422

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 68/326 (20%), Positives = 118/326 (36%), Gaps = 42/326 (12%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            D     +RP+T+ E  GQ       K+     +A    L  ++  GPPG+GKT++A  +
Sbjct: 2   PDHLALRMRPKTISEVIGQKHLVGEGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           A      FR+ +  + +K      A         VL +DEIHRL    ++ L P +E+  
Sbjct: 60  AGTTRYAFRTFNATIDSKKRLQEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGT 119

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + ++    E P         SR  +            PL +            I+   + 
Sbjct: 120 IIMIGATTENPFFSVTPAIRSRVQIFEL--------EPLSNEDIKTA------IQLAISD 165

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT--REIADAA 249
            +RG     + + DEA   I   + G  R A   L             +     E  + +
Sbjct: 166 KERGFPFL-VTIDDEALDFIVTATNGDLRSAYNSLDLAVMSTSPNEDGSRHISLETMENS 224

Query: 250 LLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           L R    +DK G    D+  L+ + ++  G  V              ++       +++ 
Sbjct: 225 LQRSYITMDKNGDGHYDV--LSALQKSIRGSDV------------NASLHYAAR--LVEA 268

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
           G +      R L  IA++ +G+  P 
Sbjct: 269 GDLP--SLARRLTIIAYEDIGLANPD 292


>gi|22538114|ref|NP_688965.1| recombination factor protein RarA [Streptococcus agalactiae
           2603V/R]
 gi|76799348|ref|ZP_00781508.1| ATPase, AAA family [Streptococcus agalactiae 18RS21]
 gi|22535021|gb|AAN00838.1|AE014281_7 ATPase, AAA family [Streptococcus agalactiae 2603V/R]
 gi|76585295|gb|EAO61893.1| ATPase, AAA family [Streptococcus agalactiae 18RS21]
          Length = 422

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 69/325 (21%), Positives = 115/325 (35%), Gaps = 42/325 (12%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           D     +RPR + E  GQ     N K+      A    L  ++  GPPG+GKT++A  +A
Sbjct: 3   DNLALRMRPRNINEVIGQQHLVGNGKIIDRMVAA--NMLSSMILYGPPGIGKTSIASAIA 60

Query: 76  RELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
                 FR+ +  V +K      A         VL +DEIHRL    ++ L P +E+  +
Sbjct: 61  GTTKYAFRTFNATVDSKKRLQEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGNI 120

Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            ++    E P         SR  +            PL +            I+   +  
Sbjct: 121 IMIGATTENPFFSVTPAIRSRVQIFEL--------EPLSNEDIKKA------IQLAISDK 166

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT--REIADAAL 250
           +RG     + + DEA   I   + G  R A   L             +     E  + +L
Sbjct: 167 ERGFPFL-VTIDDEALDFIVTATNGDLRSAYNSLDLAVMSTSPNEDGSRHISLETMENSL 225

Query: 251 LRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
                 +DK G    D   L+ + ++  G  V              ++       +++ G
Sbjct: 226 QCSYITMDKNGDGHYD--ILSALQKSIRGSDV------------NASLHYAAR--LVEAG 269

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIPH 333
            +      R L  IA++ +G+  P 
Sbjct: 270 DLP--SLARRLTIIAYEDIGLANPE 292


>gi|45185047|ref|NP_982764.1| ABL183Wp [Ashbya gossypii ATCC 10895]
 gi|44980683|gb|AAS50588.1| ABL183Wp [Ashbya gossypii ATCC 10895]
          Length = 547

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 66/334 (19%), Positives = 122/334 (36%), Gaps = 42/334 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRPR L E+ GQ    S     +    ++   +  ++  GPPG+GKT+LA+++++
Sbjct: 106 PLSEKLRPRELREYVGQQHILSQESGALYKYVSQG-TIPSMILWGPPGVGKTSLARLLSK 164

Query: 77  ELGVNFRST-------SGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVE 122
            +    ++        +    A A +L  +  N +          VLF+DEIHR +   +
Sbjct: 165 TVNARPQAKITYQLVETSATKANAQELRTVFDNAKKEFRLTKRMTVLFVDEIHRFNKGQQ 224

Query: 123 EILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR-FGIPIR 179
           ++L P +E   + L+    E PS +     LSR  +           N +  R   +  +
Sbjct: 225 DLLLPYVESGGIVLIGATTENPSFQLNNALLSRCQVFVLNKLTEDEMNRVLTRGIAMLNK 284

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
                 E+ + +         +   +     I   + G  R A  +L  V          
Sbjct: 285 CRRLLWENPRPL------KLEMECIEY----INRVAVGDTRKALNILEMVEVSTRQIPTD 334

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
              +     +LL+   + +        Y         GG    +TISA     R + E+ 
Sbjct: 335 KSLQLQDMKSLLQNDSNVV------RSYYDA------GGENHYDTISAFHKAIRGSDENA 382

Query: 300 IEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
              Y+ +       P    R ++ IA + +G+  
Sbjct: 383 ALYYLARMLQGGEDPLFIARRMVRIASEDIGLAD 416


>gi|314936259|ref|ZP_07843606.1| ATPase, AAA family [Staphylococcus hominis subsp. hominis C80]
 gi|313654878|gb|EFS18623.1| ATPase, AAA family [Staphylococcus hominis subsp. hominis C80]
          Length = 422

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 67/324 (20%), Positives = 124/324 (38%), Gaps = 42/324 (12%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +   S +RP  + E   Q        +     + +   L  ++F GPPG+GKT++A+ +A
Sbjct: 4   EPLASRMRPTNINEIISQQHLVGPRGIIRRMIETK--KLSSMIFYGPPGIGKTSIAKAIA 61

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
                 FR  +  V     D+  ++   +   + +L +DEIHRL    ++ L P +E+ +
Sbjct: 62  GSTEYKFRQLNA-VTNTKKDMQMVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGK 120

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + L+      P         SR  +            PL ++            +     
Sbjct: 121 IILIGATTSNPYHAINPAIRSRVQIFELY--------PLDEKDVYQALTRALNDD----- 167

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV-AHAKTITREIADAAL 250
            Q G K     + ++A    + +S G  R A   L      A+V  + + +T E A   L
Sbjct: 168 -QNGLKSYQPKIDEDALKYFSTQSHGDVRSALNALELAVLSAKVSNNQRHVTLEDAKDCL 226

Query: 251 LRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            + A   DK G    D+  ++   ++  G  V              A+  L    +I+ G
Sbjct: 227 QKGAFISDKDGDMHYDV--MSAFQKSIRGSDV------------NAALHYLAR--LIEAG 270

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIP 332
            +      R L+ I+++ +G+  P
Sbjct: 271 DLPTIV--RRLLVISYEDIGLASP 292


>gi|195978892|ref|YP_002124136.1| recombination factor protein RarA [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|195975597|gb|ACG63123.1| ATPase AAA family recombination factor RarA [Streptococcus equi
           subsp. zooepidemicus MGCS10565]
          Length = 423

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 67/326 (20%), Positives = 115/326 (35%), Gaps = 42/326 (12%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            D     +RPRT+ E  GQ       K+     KA    L  ++  GPPG+GKT++A  +
Sbjct: 2   PDNLAIRMRPRTITEVIGQQHLVGEGKIIDRMVKA--NRLSSMILYGPPGIGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           A      FR+ +  +  K      A         VL +DEIHRL    ++ L P +E   
Sbjct: 60  AGTTKYAFRTFNATIDNKKRLQEIAEEAKFSGGLVLLLDEIHRLDKSKQDFLLPLLEHGH 119

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + ++    E P         SR  +                            ++   T 
Sbjct: 120 IIMIGATTENPFFSVTPAIRSRVQIFELEPLSPEEIKQ--------------ALKLAITD 165

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT--REIADAA 249
            +RG     + + + A   IA  + G  R A + L       +  +        +I + +
Sbjct: 166 KERGFA-FDVTLDEAAFDFIATATNGDLRAAYQSLDLAVMSTQPDNEGIRHISLDIVENS 224

Query: 250 LLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           L R    +DK G    D   L+ + ++  G  V              ++       +++ 
Sbjct: 225 LQRSYITMDKDGDGHYD--ILSALQKSIRGSDV------------NASLHYAAR--LVEA 268

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
           G +      R L  IA++ +G+  P 
Sbjct: 269 GDLP--SLARRLTIIAYEDIGLANPE 292


>gi|322411007|gb|EFY01915.1| recombination factor protein RarA [Streptococcus dysgalactiae
           subsp. dysgalactiae ATCC 27957]
          Length = 429

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 70/326 (21%), Positives = 121/326 (37%), Gaps = 42/326 (12%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            D     +RP+T+ E  GQ       K+     +A    L  ++  GPPG+GKT++A  +
Sbjct: 2   PDHLALRMRPKTISEVIGQEHLVGEGKIIHRMVEA--NMLSSMILYGPPGIGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           A      FR+ +  V +K      A         VL +DEIHRL    ++ L P +E+  
Sbjct: 60  AGTTKYAFRTFNATVDSKKRLQEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGT 119

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + ++    E P         SR  +            PL +            ++   T 
Sbjct: 120 IIMIGATTENPFFSVTPAIRSRVQIFEL--------EPLSNEDIKRA------LQTAITD 165

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA--EVAHAKTITREIADAA 249
            +RG     + + D A   IA  + G  R A   L         +    + IT +  + +
Sbjct: 166 KERGFA-FDVMLDDNALDFIATATNGDLRSAYHSLDLAVMSTKPDSDGKRHITLDTVENS 224

Query: 250 LLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           L R    +DK G    D+  L+ + +   G  V              ++       +++ 
Sbjct: 225 LQRSYITMDKDGDGHYDV--LSALQKAIRGSDV------------NASLHYAAR--LVEA 268

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
           G +      R L+ IA++ +G+  P 
Sbjct: 269 GDLP--SLARRLIVIAYEDIGLANPD 292


>gi|187250562|ref|YP_001875044.1| ATPase family protein [Elusimicrobium minutum Pei191]
 gi|186970722|gb|ACC97707.1| ATPase family protein [Elusimicrobium minutum Pei191]
          Length = 416

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 61/340 (17%), Positives = 125/340 (36%), Gaps = 60/340 (17%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
            ++  +    + + P+ L++F GQ       ++     +  ++ +   +F GPPG+GKT 
Sbjct: 2   EDIKHDMPLAAAMAPKNLDDFAGQKHVIGPGRMLRRMIE--SDTIKSAVFFGPPGVGKTA 59

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED---------RDVLFIDEIHRLSII 120
           LA+ +A +        +    A  GD+  ++   ++         R ++ +DEIH  +  
Sbjct: 60  LARFIASKTEAVTVELNAAA-AGVGDIKKVIEEAKERRNDTFLEKRTLVVLDEIHHFNKT 118

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            +++L P++E   + L+    E P        LSRF+                       
Sbjct: 119 QQDVLLPSVERGDIILIGLTTENPYFYINNALLSRFS---------------------VF 157

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGR--LLRRVRDFAEVA 236
                + +DL+ I++R  K+    +  +A      ++ G  R       L  +    +  
Sbjct: 158 EFKPLDAKDLEQILKRVLKIKEAKIQKDAKDFFITQANGDARRLLNAVDLAILTTAKDSD 217

Query: 237 HAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRD 294
               IT ++A   + +     DK G +  D+                   ISA +   R 
Sbjct: 218 GIVNITMDVAKECMQKRHLNYDKKGDEHYDV-------------------ISAFIKSMRG 258

Query: 295 AIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           +  D    ++ +       PR   R ++  A + +G   P
Sbjct: 259 SDPDAAVYWLARMLESGEDPRFIARRILICASEDVGNAEP 298


>gi|115391273|ref|XP_001213141.1| hypothetical protein ATEG_03963 [Aspergillus terreus NIH2624]
 gi|114194065|gb|EAU35765.1| hypothetical protein ATEG_03963 [Aspergillus terreus NIH2624]
          Length = 531

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 71/334 (21%), Positives = 115/334 (34%), Gaps = 67/334 (20%)

Query: 17  ADISLLRPRTLEEFTGQVEAC--SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
                +RPRTL+E  GQ        L+  IE      + +  ++  G PG GKTT+A+V+
Sbjct: 121 PLAERMRPRTLDEVCGQDLVGPNGVLRGLIE-----QDRVPSMVLWGGPGTGKTTIARVI 175

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYP 127
           A  +G  F   +        +   +    +        + ++F DEIHR S   +++   
Sbjct: 176 ASMVGSRFVEINS-TSTGVAECKKIFAEAKSELGLTGRKTIIFCDEIHRFSKSQQDVFLG 234

Query: 128 AMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
            +E  Q+ L+    E PS +     LSR                                
Sbjct: 235 PVESGQVTLIGATTENPSFKVQSALLSRCRTFTL---------------------AKLTD 273

Query: 186 EDLKTIVQRGAKLTGLAV------TDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           ED+K+I+ R  ++ G          DE    +A  S G  R +  LL    D +      
Sbjct: 274 EDVKSILNRALQVEGPNYSPSALVDDELITYLAKFSDGDARTSLNLLELAMDLS--KRPD 331

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
               E+  +    L  D+ G    D                   TISA     R +  D 
Sbjct: 332 ITKEELKRSLTKTLVYDRAGDQHYD-------------------TISAFHKSLRGSDPDA 372

Query: 300 IEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
              Y+ +       P    R L+ +A + +G+  
Sbjct: 373 ALYYLARMIQSGEDPLYIARRLIVVASEDIGLAD 406


>gi|307709674|ref|ZP_07646126.1| ATPase family associated with various cellular activities (AAA)
           family protein [Streptococcus mitis SK564]
 gi|307619572|gb|EFN98696.1| ATPase family associated with various cellular activities (AAA)
           family protein [Streptococcus mitis SK564]
          Length = 423

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 65/326 (19%), Positives = 115/326 (35%), Gaps = 42/326 (12%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            D     +RP+T+++  GQ       K+     +A    L  ++  GPPG+GKT++A  +
Sbjct: 2   PDNLALRMRPKTIDQVIGQEHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           A      FR+ +  V +K      A         VL +DEIHRL    ++ L P +E   
Sbjct: 60  AGTTKYAFRTFNATVDSKKRLQEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGL 119

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + ++    E P         SR  +                            ++     
Sbjct: 120 VIMIGATTENPFFSVTPAIRSRVQIFELEPLSNQDVKE--------------ALQIALNN 165

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI--TREIADAA 249
            +RG     + + ++A   IA  + G  R A   L                 T ++   +
Sbjct: 166 PERGFD-FPVELDEDALDFIATSTNGDLRSAFNSLDLAVLSTPENDKGIRHITLDVMKNS 224

Query: 250 LLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           L R    +DK G    D+  L+ + ++  G  V              ++       +I+ 
Sbjct: 225 LQRSYITMDKDGDGHYDV--LSALQKSIRGSDVDA------------SLHYAAR--LIEA 268

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
           G +      R L  IA++ +G+  P 
Sbjct: 269 GDLP--SLARRLTVIAYEDIGLANPE 292


>gi|302550147|ref|ZP_07302489.1| recombination factor protein RarA [Streptomyces viridochromogenes
           DSM 40736]
 gi|302467765|gb|EFL30858.1| recombination factor protein RarA [Streptomyces viridochromogenes
           DSM 40736]
          Length = 450

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 79/331 (23%), Positives = 117/331 (35%), Gaps = 59/331 (17%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEA--LDHVLFVGPPGLGKTTLAQVVAREL 78
            +RPRTL+E  GQ                 +       VL  GPPG GKTTLA VV++  
Sbjct: 26  RMRPRTLDEVVGQQHLLKPGSPLRRLVGEASGPAGPSSVLLWGPPGTGKTTLAYVVSKAT 85

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAMED 131
              F   S  + A   ++ A++              VLF+DEIHR S   ++ L PA+E+
Sbjct: 86  DARFVELSA-ITAGVKEVRAVIDGARRASGGYGKETVLFLDEIHRFSKAQQDSLLPAVEN 144

Query: 132 FQLDLM--VGEGPSARSVKINLSRFT-----LIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
             + L+    E P    +   LSR        +      GL+   L D  G+   +    
Sbjct: 145 RWVTLIAATTENPYFSVISPLLSRSLLLTLEPLTDDDIRGLIRRALSDERGLGDAVAL-- 202

Query: 185 IEDLKTIVQRGAKLT-GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            E+ +  + R A      A+T   A   A   +G P I    L    D A V        
Sbjct: 203 PEETENHLLRIAGGDARRALTALEAAAGAALDKGEPEIGLTTLEETVDRAAVK------- 255

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
                       D+ G    D+   + + ++  G  V                 D    Y
Sbjct: 256 -----------YDRDGDQHYDVA--SALIKSIRGSDV-----------------DAALHY 285

Query: 304 MIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           + +       PR   R LM  A + +G+  P
Sbjct: 286 LARMIEAGEDPRFIARRLMISASEDIGLADP 316


>gi|302546908|ref|ZP_07299250.1| AAA family ATPase [Streptomyces hygroscopicus ATCC 53653]
 gi|302464526|gb|EFL27619.1| AAA family ATPase [Streptomyces himastatinicus ATCC 53653]
          Length = 434

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 69/345 (20%), Positives = 117/345 (33%), Gaps = 57/345 (16%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M     L     ++  AD  LLRP  LE+  GQ    +             + L   +  
Sbjct: 1   MEPTLPLFDEEPTRPLAD--LLRPTQLEDVVGQDHLLAPDAPLGRMV--AQQRLSSAILW 56

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEI 114
           GPPG+GKTT+A+++AR   + F   S    +   +L  +    + R       +LF+DEI
Sbjct: 57  GPPGVGKTTIARLLARAGNLAFEPVSA-TFSGVAELRKVFAAAQRRRGIGQGTLLFVDEI 115

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++   P +ED  + L+    E PS       LSR  ++               
Sbjct: 116 HRFNRAQQDSFLPYVEDGTITLIGATTENPSFELNGALLSRTQVLVLKR----------- 164

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKL--TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
                      +   L T++ R  +L    L + D+A   +   + G  R    +  +++
Sbjct: 165 ----------LDEAALSTLLHRAEQLTGHRLPLGDDARRALIAMADGDGRYLLNMAEQLQ 214

Query: 231 DFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
              +       T             DK      +L                   ISA   
Sbjct: 215 ALPDTETTMDTTALAHHIQQRAPLYDKAQESHYNL-------------------ISALHK 255

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
             R +  D    ++ +       P    R L+    + +G+  PH
Sbjct: 256 SMRGSDPDAALYWLARMLDGGEDPLFVARRLVRFGVEDIGMADPH 300


>gi|325526164|gb|EGD03808.1| recombination factor protein RarA [Burkholderia sp. TJI49]
          Length = 251

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 66/275 (24%), Positives = 100/275 (36%), Gaps = 38/275 (13%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D   L S    +  AD   LRP +L++  GQ            A +  +     ++F 
Sbjct: 1   MSD---LFSPEPRRPLAD--ALRPASLDDVIGQTHLLGAGMPLRRAFE--SGKPHSMIFW 53

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDL-------AALLTNLEDRDVLFIDE 113
           GPPG+GKTTLA++ A+     F + S  V+    D+                R ++F+DE
Sbjct: 54  GPPGVGKTTLARLTAQAFDCAFVALSA-VLGGVKDIRAATARAQQAFDGAGRRTIVFVDE 112

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   +  L P++    +  +    E PS       LSR  +    +        L 
Sbjct: 113 IHRFNDTQQAALLPSVASGAVIFIGATTENPSFEVNSALLSRAQVYVLQSLNDDEMRQLL 172

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R                        L GLA  D+A   +   + G  R    LL + + 
Sbjct: 173 RRAQEIA-------------------LDGLAFDDKAVDTLVGYADGDARRFLNLLEQAQT 213

Query: 232 FAEVAHAKTITREIADAA--LLRLAIDKMGFDQLD 264
            A  A   TI  +   +A  L     DK G +  D
Sbjct: 214 AAASAGVTTIDADFVSSAMTLNARRFDKGGDNFYD 248


>gi|327350459|gb|EGE79316.1| AAA family ATPase [Ajellomyces dermatitidis ATCC 18188]
          Length = 543

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 73/342 (21%), Positives = 123/342 (35%), Gaps = 67/342 (19%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEAC--SNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           S  +         +RP+TL++  GQ        L+  IE      + +  ++  G  G G
Sbjct: 121 SNALKNAAPLAERMRPQTLDDVCGQELVGPSGVLRGLIE-----QDRVPSMILWGGAGTG 175

Query: 67  KTTLAQVVARELGVNFRSTSGPV--IAKAGDLAALLTN----LEDRDVLFIDEIHRLSII 120
           KTT+A+V+A+ +G  F   +     IA+   L A   N       + +LF DEIHR S  
Sbjct: 176 KTTIARVIAKMVGSRFVEINSTNSGIAEWKKLFAEAKNELSLSGKKTILFCDEIHRFSKS 235

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            +++    +E  Q+  +    E PS+R     LSR                         
Sbjct: 236 QQDVFLGPVESGQITFIGATTENPSSRIQNALLSRCRTFTL------------------- 276

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAV------TDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
                 +E++ +I+ R  ++ G          DE    +A  + G  R +  LL    D 
Sbjct: 277 --AKLTVENIVSILNRALEVEGSNYSPSPLVDDELIKYLAAFADGDARTSLNLLELTMDL 334

Query: 233 AEVAHAKTITREIADAALLRL-AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
           +       +T+E    +L +    D++G    D                   TISA    
Sbjct: 335 SRREG---MTKEDLKKSLTKTLVYDRVGDQHYD-------------------TISAFHKS 372

Query: 292 PRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
            R    D    Y+ +       P    R L+ +A + +G+  
Sbjct: 373 IRGNDPDAALYYLARMIQSGEDPLYIARRLIVVASEDIGLAD 414


>gi|260948804|ref|XP_002618699.1| hypothetical protein CLUG_02158 [Clavispora lusitaniae ATCC 42720]
 gi|238848571|gb|EEQ38035.1| hypothetical protein CLUG_02158 [Clavispora lusitaniae ATCC 42720]
          Length = 768

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 76/334 (22%), Positives = 132/334 (39%), Gaps = 35/334 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP+TL++F GQ +      +        ++ +   +  G PG+GKT+LA+++A 
Sbjct: 223 PLAQRLRPKTLDDFFGQEKLVGPNGILRN--IMASQQIPSFILWGVPGVGKTSLARIIAS 280

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAM 129
                +   SG   + A  L    +N ++       + +LF+DEIHR +  V+++L P +
Sbjct: 281 NSNHRYVELSGSESS-AKKLKEAFSNAQNEQQLSGTKTILFLDEIHRFNKAVQDLLLPVI 339

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI-PIRLNFYEIE 186
           E   + ++    E PS       LSR            +  PL     +  +      + 
Sbjct: 340 EKGVVTVIGATTENPSFTLNNALLSRMHT--------FVMEPLSHEALVKILNKGLLLVN 391

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + IV     L  +A+  EA   IA  S G  R+A  +L  V  +              
Sbjct: 392 KTRKIVH---GLHLIAMNKEAIDHIARLSTGDSRVALNILESVNAYLSGRKYNAFPDREE 448

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIA--RNFGG-----GPVGIETISAGLSEPRDAIEDL 299
              +     +K+G  ++DL  L  +   RNF       G    +TISA     R +  D 
Sbjct: 449 GETIDV--PEKIGIIKVDLENLKPLLATRNFHQMYDKVGENHYDTISAFHKSVRGSDADA 506

Query: 300 IEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
              Y+++       P    R ++ IA + +G+  
Sbjct: 507 AVFYLVKMLSGGEDPLFIARRMIVIASEDIGLRD 540


>gi|119713533|gb|ABL97586.1| ATPase AAA family protein [uncultured marine bacterium EB0_35D03]
          Length = 417

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 76/333 (22%), Positives = 128/333 (38%), Gaps = 56/333 (16%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +S       +LRP  L +F GQ     + K   +A     +    ++F GP G+GKTTLA
Sbjct: 1   MSTYQPLAEVLRPTKLNDFIGQDHLLKSDKPIGKA--LADKQFLSMVFWGPSGVGKTTLA 58

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEIL 125
           +++  ++G +F   S  V+    +L  ++ + E         +LF+DEIHR +   ++  
Sbjct: 59  RIICSQMGAHFEQMSA-VLDGIKELRNVIEHAELYKQHDKNTILFVDEIHRFNKAQQDAF 117

Query: 126 YPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
            P +E   + L+    E PS       LSR  +         + N L+D           
Sbjct: 118 LPHIESGLITLIGATTENPSFEINSSLLSRMRV--------YILNKLRD----------- 158

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAAC-EIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
             EDLK I  +  K   + + D  A   I   S G  R    ++ ++ D       +T++
Sbjct: 159 --EDLKIIASKAIKSQKITLKDNDALSLIIEHSDGDARRLINIIEQLTD----KSNRTLS 212

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
                  L                  T +A    GG +  + +SA     R +  D    
Sbjct: 213 INDVSKILQ-----------------TKVASFDKGGDIYYQQLSAFHKSVRGSSPDGALY 255

Query: 303 YMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +M +       P+   R L+ IA + +G   P 
Sbjct: 256 WMARMIVSGCDPKVIARRLLAIASEDIGNADPR 288


>gi|221485041|gb|EEE23331.1| werner helicase interacting protein, putative [Toxoplasma gondii
           GT1]
          Length = 586

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 61/246 (24%), Positives = 92/246 (37%), Gaps = 40/246 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP +LEE+ GQ       +  I         L  ++  GPPG GKTT+A +  R
Sbjct: 89  PLAERLRPASLEEYVGQRGCIQGGRGSIRELLEAGH-LPSLILWGPPGCGKTTIALLAGR 147

Query: 77  ELGVNFRSTSGP---------VIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSII 120
            +G    + S P         V     D+  ++          + + VLF+DEIHR +  
Sbjct: 148 SVGKKNSALSLPPPVFKKMSAVTCGVNDVRKVVQEALTLRATTKQKTVLFLDEIHRFNKA 207

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++ L P +E   + L+    E PS    +  LSR  +                      
Sbjct: 208 QQDALLPHVETGTITLIGATTENPSFEVNRALLSRCRVCKL------------------- 248

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
                  EDL TI+QR AK   + +T+ A   I   + G  R A  +L         A+ 
Sbjct: 249 --EPLTEEDLTTILQRAAKEENVTITEAAVRVICRLADGDARRALNMLENAIHHERTANE 306

Query: 239 KTITRE 244
              T +
Sbjct: 307 NKATND 312


>gi|239932410|ref|ZP_04689363.1| recombination factor protein RarA [Streptomyces ghanaensis ATCC
           14672]
 gi|291440776|ref|ZP_06580166.1| recombination factor protein RarA [Streptomyces ghanaensis ATCC
           14672]
 gi|291343671|gb|EFE70627.1| recombination factor protein RarA [Streptomyces ghanaensis ATCC
           14672]
          Length = 451

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 83/358 (23%), Positives = 130/358 (36%), Gaps = 66/358 (18%)

Query: 2   MDREGLLSRNVSQEDADIS------LLRPRTLEEFTGQVEAC---SNLKVFIEAAKARAE 52
           M+ +   +    +++ D +       +RPRTL+E  GQ       S L+  +    +   
Sbjct: 1   MEPDLFTAAAEERQEKDPAGSPLAVRMRPRTLDEVVGQQHLLKPGSPLRRLVGEGSSGPA 60

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------ED 105
               V+  GPPG GKTTLA VV++     F   S  + A   ++ A++            
Sbjct: 61  GPSSVILWGPPGTGKTTLAYVVSKATNKRFVELSA-ITAGVKEVRAVIDGARRASGGYGQ 119

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRV 163
             VLF+DEIHR S   ++ L PA+E+  + L+    E P    +   LSR  L+      
Sbjct: 120 ETVLFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYFSVISPLLSRSLLLTLEPLT 179

Query: 164 GL-----LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT-GLAVTDEAACEIAMRSRG 217
                  L   L D  G+   +     ED +  + R A      A+T   A   A   +G
Sbjct: 180 DDDVRDLLRRALTDERGLGGAVAL--PEDTEGHLLRIAGGDARRALTALEAAAGAALDKG 237

Query: 218 TPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGG 277
              IA   L    D A V                    D+ G    D+   + + ++  G
Sbjct: 238 EAEIALTTLEETVDRAAVK------------------YDRDGDQHYDVA--SALIKSIRG 277

Query: 278 GPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
             V                 D    Y+ +       PR   R LM  A + +G+  P+
Sbjct: 278 SDV-----------------DAALHYLARMIEAGEDPRFIARRLMISASEDIGLADPN 318


>gi|293375579|ref|ZP_06621853.1| recombination factor protein RarA [Turicibacter sanguinis PC909]
 gi|292645796|gb|EFF63832.1| recombination factor protein RarA [Turicibacter sanguinis PC909]
          Length = 421

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 67/333 (20%), Positives = 118/333 (35%), Gaps = 58/333 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
               L+RPRTL+E  GQ       ++  +  +     + +++F GP G GKTT+A ++A 
Sbjct: 4   PLADLIRPRTLDEVVGQQHLIGEGQILRKLIEVNH--IPNLIFYGPSGTGKTTIANIIAS 61

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE-----DRDVLFIDEIHRLSIIVEEILYPAMED 131
                    +    AK  D+  ++++L      +   L++DEI   +   ++ L   +E 
Sbjct: 62  LSNKKIYKLNA-TDAKTEDIKQIISSLNTLEGMNGIFLYLDEIQNFNKKQQQTLLKYIET 120

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
            Q+ L+    E P        LSR T++   +                        E++ 
Sbjct: 121 GQITLITSTTENPYFTIFSAILSRSTILEFKS---------------------LTPEEIV 159

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
             ++R  +L                      +A   LRR  +  E+A       E     
Sbjct: 160 DGLKRAVELVESEFYLYPLTVEEEALNYIANVANGDLRRALNALEIALYPNCRTEGFVLN 219

Query: 250 LLRLA---------IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           L              D+ G    D   L+   ++  G            S+P  AI  L 
Sbjct: 220 LEVARECTVTAGFSYDRFGDQHYDT--LSAFQKSIRG------------SDPDAAIHYLA 265

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
              +I+ G +  T   R L+ IA + +G+  P 
Sbjct: 266 R--LIKAGDL--TSICRRLLVIAAEDIGLAYPQ 294


>gi|328468694|gb|EGF39679.1| recombination factor protein RarA [Lactobacillus helveticus MTCC
           5463]
          Length = 437

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 66/329 (20%), Positives = 113/329 (34%), Gaps = 47/329 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+ L++  GQ       K+     +AR   L  ++  GPPG+GKT++A  +A 
Sbjct: 3   PLAYRMRPQNLDQVVGQQHLIGPGKIIRRMVEAR--LLSSMILYGPPGIGKTSIASAIAG 60

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR  +     K      A    +    +L +DEIHRL    ++ L P +E  Q+ 
Sbjct: 61  STKYAFRKLNAATDGKKQLQQVAAEGKMSGTVILLLDEIHRLDKTKQDFLLPLLESGQII 120

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           L+    E P         SR  +           +   DR                T  +
Sbjct: 121 LIGATTENPYISISPAIRSRCQIFELKPLSAQDASSAIDR--------------ALTDKE 166

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV--------RDFAEVAHAKTITREI 245
            G     + +TD+A   +  +  G  R     L           +D  +  ++  IT++ 
Sbjct: 167 NGLGNYPVELTDDARSLLIEKGNGDLRSTLNSLELAVLSTKQELKDNHQDTNSIVITQQE 226

Query: 246 ADAALLR--LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
              ++       D  G    D      +   F     G +T +A                
Sbjct: 227 MADSIQMKVQNFDSSGDGHYD------LVSAFQKSIRGSDTDAALH----------YLAK 270

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           +I+ G +      R L  IA++ +G+  P
Sbjct: 271 LIESGDLISIC--RRLSVIAYEDIGLANP 297


>gi|332882226|ref|ZP_08449856.1| ATPase, AAA family [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332679849|gb|EGJ52816.1| ATPase, AAA family [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 425

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 67/334 (20%), Positives = 119/334 (35%), Gaps = 61/334 (18%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP TLE++ GQ       +  +    AR   L  ++F GPPG GKTTLA ++A 
Sbjct: 3   PLAERMRPTTLEDYVGQEHLVGT-QGALSQQIARG-FLPSLIFWGPPGTGKTTLANIIAH 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE--------DRDVLFIDEIHRLSIIVEEILYPA 128
           +    F + S  + +   ++  ++   +           ++FIDEIHR +   ++ L  A
Sbjct: 61  QSNRAFYTLSA-ISSGIKEVREVIEQSKQSGGLFTTQNPIVFIDEIHRFNKTQQDSLLQA 119

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           +E   + L+    E PS   +   LSR  +                        N +E +
Sbjct: 120 VEKGWITLIGATTENPSFEVIPALLSRCQVYIL---------------------NAFERK 158

Query: 187 DLKTIVQRG-AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           DL+ ++Q   AK + L   D    E     + +     +LL                   
Sbjct: 159 DLEQLLQNAIAKDSVLKTKDIQLKETEALLKLSGGDGRKLLNTFELIVNATPEGQSVVIT 218

Query: 246 ADAALLRLA-----IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
            D+ L  +       DK G    D+                   ISA +   R +  +  
Sbjct: 219 NDSVLHLVQKNTVLYDKTGEQHYDI-------------------ISAFIKSIRGSDPNGA 259

Query: 301 EPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
             ++ +        +   R ++ +A + +G   P
Sbjct: 260 VYWLARMIEGGEDVKFIARRMLILASEDIGNANP 293


>gi|322390784|ref|ZP_08064294.1| AAA family ATPase [Streptococcus parasanguinis ATCC 903]
 gi|321142454|gb|EFX37922.1| AAA family ATPase [Streptococcus parasanguinis ATCC 903]
          Length = 434

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 69/331 (20%), Positives = 121/331 (36%), Gaps = 42/331 (12%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           +     D     +RPRT+++  GQ       K+     +A    L  ++  GPPG+GKT+
Sbjct: 8   KEKEMPDNLALRMRPRTIDQVIGQQHLVGEGKIIRRMVEA--NRLSSMILYGPPGIGKTS 65

Query: 70  LAQVVARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           +A  +A      FR+ +  V +K      A         VL +DEIHRL    ++ L P 
Sbjct: 66  IASAIAGTTKYAFRTFNATVDSKKRLQEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPL 125

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           +E   + ++    E P         SR        ++  L     +     ++    + +
Sbjct: 126 LESGLVIMIGATTENPFFSVTPAIRSRV-------QIFELEPLTTEEVKQALKTALDDPD 178

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI--TRE 244
                  RG     + + ++A   IA  + G  R A   L                 T E
Sbjct: 179 -------RGFD-FPVVLDEDALDFIATSTNGDLRSAFNSLDLAVLSTSENAEGIRHITLE 230

Query: 245 IADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           I + +L R    +DK G    D+  L+ + ++  G  V              ++      
Sbjct: 231 IMENSLQRSYITMDKDGDGHYDV--LSALQKSIRGSDVDA------------SLHYAAR- 275

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            +I+ G +      R L  IA++ +G+  P 
Sbjct: 276 -LIEAGDLP--SLARRLTVIAYEDIGLANPD 303


>gi|283851952|ref|ZP_06369228.1| AAA ATPase central domain protein [Desulfovibrio sp. FW1012B]
 gi|283572676|gb|EFC20660.1| AAA ATPase central domain protein [Desulfovibrio sp. FW1012B]
          Length = 408

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 79/324 (24%), Positives = 127/324 (39%), Gaps = 55/324 (16%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           +++      +RP++L +F GQ    S L+  + A +     L  +L  GPPG GK+TLA 
Sbjct: 6   NEKRPLAERIRPQSLTDFVGQTHVISRLETMLAAPR-----LPSLLLFGPPGCGKSTLAL 60

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++AR  G  +   S P       LA L   ++ +++L +DE+HR S   ++   P +E  
Sbjct: 61  ILARAKGRPYVRVSAPEAG----LATLRELIKGKEILILDELHRFSKAQQDFFLPLLETG 116

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           ++ L+    E PS    +  LSR  ++                             +L  
Sbjct: 117 EMVLLATTTENPSFSVTRQLLSRLHVLRL---------------------RPLSHGELML 155

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           + +RGAK  GL +  E+   IA+ S G  R    L+  V    E   A    ++    AL
Sbjct: 156 LAERGAKAAGLDLARESLDAIALLSSGDGRTLLNLVEFVAALPEEKRAPEELKKHLPEAL 215

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
            R   D+ G    +L                    SA +   R +  D    Y+      
Sbjct: 216 AR--GDRDGDSHYELA-------------------SAMIKSIRGSDPDAALYYLACLLES 254

Query: 311 QRTPR--GRLLMPIAWQHLGIDIP 332
              PR   R LM  A + +G+  P
Sbjct: 255 GEDPRFCCRRLMISASEDIGLADP 278


>gi|329667579|gb|AEB93527.1| hypothetical protein LJP_1205 [Lactobacillus johnsonii DPC 6026]
          Length = 431

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 60/322 (18%), Positives = 107/322 (33%), Gaps = 35/322 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+ L+E  GQ     N K+     +A+   L  ++  GPPG+GKT++A  +A 
Sbjct: 3   PLAYRMRPKNLDEVVGQEHLVGNKKIIRRMVEAK--LLSSMILYGPPGIGKTSIASAIAG 60

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR  +     K    + A    +    +L +DEIHRL    ++ L P +E   + 
Sbjct: 61  STKYAFRKLNAATDTKKDLQIVAEEGKMSGTVILLLDEIHRLDKTKQDFLLPLLESGNII 120

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           L+    E P         SR  +           +   DR                   +
Sbjct: 121 LIGATTENPYISISPAIRSRCQIFELHRLKKGDISHAIDR--------------ALKDSE 166

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
            G     + +T +A   +  +  G  R     L       +    +    ++    +   
Sbjct: 167 TGLGKYNVELTKDARNLLIEKGNGDLRATLNALELAVLSTKEEKQENADNKLVIDKVEMQ 226

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY---MIQQGFI 310
              +      D             G    + +SA     R +  D    Y   + + G +
Sbjct: 227 DSIQFKSQNYD-----------ANGDGHYDLLSAFQKSIRGSDTDAALYYLGNLCESGDL 275

Query: 311 QRTPRGRLLMPIAWQHLGIDIP 332
                 R L+ IA++ +G+  P
Sbjct: 276 VAIC--RRLLVIAYEDIGLANP 295


>gi|319952206|ref|YP_004163473.1| aaa atpase central domain protein [Cellulophaga algicola DSM 14237]
 gi|319420866|gb|ADV47975.1| AAA ATPase central domain protein [Cellulophaga algicola DSM 14237]
          Length = 425

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 65/332 (19%), Positives = 118/332 (35%), Gaps = 54/332 (16%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            +     +RP+TLE++  Q+    +        K     +  ++  GPPG GKTTLA ++
Sbjct: 2   NEPLAERIRPKTLEDYISQLHLVGDNGSLTHQIKK--GIIPSLILWGPPGTGKTTLANII 59

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLED--------RDVLFIDEIHRLSIIVEEILY 126
           A E G  F + S  + +   D+  ++   +           +LFIDEIHR S   ++ L 
Sbjct: 60  AMESGRPFYTLSA-INSGVKDIREVIDKAKQSGGLFTTKNPILFIDEIHRFSKSQQDSLL 118

Query: 127 PAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
            A+E   + L+    E PS   +   LSR  +             L +R           
Sbjct: 119 AAVEKGWVTLIGATTENPSFEVIPALLSRCQVYILKEFGKDDLVALLER----------- 167

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
                  + +  K   + + +  A      S G  R    +   V + +E      IT +
Sbjct: 168 ----AIALDKHLKSKTITLKETDAL--LRLSGGDGRKLLNMFELVIN-SESGDTIEITND 220

Query: 245 IADAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           +    + +     DK G    D+                   ISA +   R +  +    
Sbjct: 221 LVLQKVQKNTVRYDKTGEQHYDI-------------------ISAFIKSIRGSDPNAAVY 261

Query: 303 YMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           ++ +        +   R ++  A + +G+  P
Sbjct: 262 WLARMIEGGEDVKFIARRMLIAASEDIGLANP 293


>gi|227499837|ref|ZP_03929930.1| crossover junction endodeoxyribonuclease ATPase [Anaerococcus
           tetradius ATCC 35098]
 gi|227217946|gb|EEI83219.1| crossover junction endodeoxyribonuclease ATPase [Anaerococcus
           tetradius ATCC 35098]
          Length = 440

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 74/345 (21%), Positives = 128/345 (37%), Gaps = 46/345 (13%)

Query: 1   MMDREGLLS-RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           MMD       + + +E      LRP+ LE + GQ       K+     KA  + +   +F
Sbjct: 1   MMDLFEYNRIKQLEKEAPLADRLRPKNLEAYLGQDHLLGPGKIITRMIKA--DRIYSCIF 58

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFID 112
            GPPG+GKT+LA++++++  + F   S  V +   DL   +   +D       + +LFID
Sbjct: 59  YGPPGVGKTSLAKIISQKTNMAFEEISA-VASGINDLKKKVQIAKDNLAYENKKTILFID 117

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           EIHR +   ++ L P +ED  L L+    E P     K  +SR  +    +        L
Sbjct: 118 EIHRFNKSQQDYLLPFVEDSTLILIGATTENPYFEVNKALISRMYVFELKS--------L 169

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
            DR    +       +    I++R      + ++ +A   +   S G  R     L  + 
Sbjct: 170 SDRDLDRLIDMALNKDP---ILKR----KNIDISKDARNTLITYSNGDCRALLNALE-IA 221

Query: 231 DFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
            F+E      I  + +           +     D  Y               +T SA + 
Sbjct: 222 IFSEDEKEGKIVIDKSTIENSTQKKIAIYDKDGDRHY---------------DTTSAFIK 266

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
             R +  D    Y+ +        +   R +M  A + +    P 
Sbjct: 267 SMRGSDIDASIYYLAKMLESGEDIKFIARRMMIFAAEDISNADPK 311


>gi|293365951|ref|ZP_06612654.1| AAA family ATPase [Streptococcus oralis ATCC 35037]
 gi|291315629|gb|EFE56079.1| AAA family ATPase [Streptococcus oralis ATCC 35037]
          Length = 429

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 68/326 (20%), Positives = 116/326 (35%), Gaps = 42/326 (12%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            D     +RP+T+++  GQ       K+     +A    L  ++  GPPG+GKT++A  +
Sbjct: 8   PDNLALRMRPKTIDQVIGQEHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAI 65

Query: 75  ARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           A      FR+ +  V +K      A         VL +DEIHRL    ++ L P +E   
Sbjct: 66  AGTTKYAFRTFNATVDSKKRLQEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGL 125

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + ++    E P         SR  +                            I+   T 
Sbjct: 126 VIMIGATTENPFFSVTPAIRSRVQIFELEPLANQDVKE--------------AIQIALTN 171

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI--TREIADAA 249
            +RG     + +  +A   IA  + G  R A   L                 T +I + +
Sbjct: 172 PERGFD-FPVELDGDALDFIATSTNGDLRSAFNSLDLAVLSTPENDNGIRHITLDIMENS 230

Query: 250 LLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           L R    +DK G    D+  L+ + ++  G  V              ++       +I+ 
Sbjct: 231 LQRSYITMDKDGDGHYDV--LSALQKSIRGSDVDA------------SLHYAAR--LIEA 274

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
           G +      R L  IA++ +G+  P 
Sbjct: 275 GDLP--SLARRLTVIAYEDIGLANPE 298


>gi|261209220|ref|ZP_05923612.1| AAA ATPase [Enterococcus faecium TC 6]
 gi|289566136|ref|ZP_06446571.1| AAA domain-containing protein yrvN [Enterococcus faecium D344SRF]
 gi|294614190|ref|ZP_06694110.1| ATPase, AAA family [Enterococcus faecium E1636]
 gi|260076766|gb|EEW64501.1| AAA ATPase [Enterococcus faecium TC 6]
 gi|289162081|gb|EFD09946.1| AAA domain-containing protein yrvN [Enterococcus faecium D344SRF]
 gi|291592966|gb|EFF24555.1| ATPase, AAA family [Enterococcus faecium E1636]
          Length = 428

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 67/323 (20%), Positives = 114/323 (35%), Gaps = 41/323 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RPRT++E  GQ       K+      AR   L  ++  GPPG GKT++A  +A 
Sbjct: 4   PLAYRMRPRTIDEVVGQQHLVGEGKIIRRMVDAR--MLSSMILYGPPGTGKTSIASAIAG 61

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR  +    +K    + A    +    +L +DE+HRL    ++ L P +E  ++ 
Sbjct: 62  STNYAFRMLNAATDSKKDLQVVAEEAKMSGTVILLLDEVHRLDKTKQDFLLPHLESGRII 121

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           L+    E P         SR  +            PL +      +     +E      +
Sbjct: 122 LIGATTENPYITINPAIRSRTQIFEV--------KPLTE------QDIQLAVEHALRDKE 167

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI--TREIADAALL 251
           RG     + + ++A   ++  + G  R A   L              I  T  I +  + 
Sbjct: 168 RGLGQQAIQLDEDALLHLSRATNGDLRSALNGLELATLSTPSDKEGRIHLTLSIIEECVQ 227

Query: 252 RLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           R A   DK G    D      +   F     G +  +A                +++ G 
Sbjct: 228 RKALTHDKNGDAHYD------VISAFQKSIRGSDVDAALH----------YLARLVEAGD 271

Query: 310 IQRTPRGRLLMPIAWQHLGIDIP 332
           +      R LM I ++ +G+  P
Sbjct: 272 LASIC--RRLMVIGYEDIGLGNP 292


>gi|322786219|gb|EFZ12823.1| hypothetical protein SINV_00013 [Solenopsis invicta]
          Length = 431

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 54/353 (15%), Positives = 115/353 (32%), Gaps = 47/353 (13%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           S    +  +    +RP ++  + GQ +      V     +     +  ++F GPPG GKT
Sbjct: 31  SSEALERVSLAEEMRPTSVAAYVGQEQIIGPNTVLNHLLEKGE--IPSMIFWGPPGCGKT 88

Query: 69  TLAQVVAR-----ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHR 116
           +L  ++A                    +   ++   +T  +++        ++F+DEIH 
Sbjct: 89  SLTNIIATLSKKLTSNNVHIVNLSAANSGVKNIRDAVTEAKNKLKLSDCKTIVFMDEIHC 148

Query: 117 LSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVG-LLTNPLQDR 173
            + + ++I  P +E     L+    E PS       LSR  +          +T  L   
Sbjct: 149 FNKLQQDIFLPHVEAGTFTLIGCTTENPSYSLNPALLSRCRVFMLNKLTKCNITEILHKT 208

Query: 174 FGIPIRLNFYEIEDLKTIVQ---RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
                    Y  E   +  Q            + + A   +A    G  R+A   L   +
Sbjct: 209 IERINGDTLYTQEQTSSKEQFKFHSRTKLKFHIDNNAVQWLAEACDGDARVALNALELAK 268

Query: 231 DFAEV--------AHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGI 282
              +          +  TIT +     L++  +             + + ++   G    
Sbjct: 269 LMRQADVLKTSSYNNNVTITLKDIKEGLMKAHLLSERETNQSHHLYSALHKSIRAGK--- 325

Query: 283 ETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                         ++ +  ++ +   ++  P    R L+ I+ + +G+  P 
Sbjct: 326 --------------KNAVLYWLARIMAVKEDPVNIARRLVRISSEDIGLADPD 364


>gi|302525831|ref|ZP_07278173.1| recombination factor protein RarA [Streptomyces sp. AA4]
 gi|302434726|gb|EFL06542.1| recombination factor protein RarA [Streptomyces sp. AA4]
          Length = 460

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 87/328 (26%), Positives = 129/328 (39%), Gaps = 57/328 (17%)

Query: 21  LLRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
            +RPRTL+E  GQ       + L+  +E A     A   VL  GPPG GKTTLA +V+  
Sbjct: 39  RMRPRTLDEVVGQQHLLREGAPLRRLVEGA-----APASVLLYGPPGTGKTTLANLVSIA 93

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAME 130
            G  F + S  + A   ++  ++     R        VLFIDE+HR S   ++ L  A+E
Sbjct: 94  TGRRFVAMSA-LSAGVKEVRGVIEEARRRRQYNTENTVLFIDEVHRFSKTQQDALLGAVE 152

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           D  + L+    E PS   V   LSR  ++           PL D   + +       E  
Sbjct: 153 DRTVLLVAATTENPSFSVVSPLLSRSLVLQLR--------PLTDDDIVAVLERALADE-- 202

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
                RG     L +TD+A   +   + G  R A   L    D A     KTI   + ++
Sbjct: 203 -----RGLGG-ELTLTDDARAHLVRLAGGDARRALTALEAAADAASATENKTIDLAVVES 256

Query: 249 ALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
            + + A   D+ G    D+                   ISA +   R +  D    Y+ +
Sbjct: 257 TVDKAAVRYDRDGDQHYDV-------------------ISAFIKSIRGSDVDAALHYLAR 297

Query: 307 QGFIQRTPR--GRLLMPIAWQHLGIDIP 332
                  PR   R L+  A + +G+  P
Sbjct: 298 MIEAGEDPRFLARRLVVHASEDVGLADP 325


>gi|260102589|ref|ZP_05752826.1| AAA family ATPase [Lactobacillus helveticus DSM 20075]
 gi|260083616|gb|EEW67736.1| AAA family ATPase [Lactobacillus helveticus DSM 20075]
          Length = 437

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 66/329 (20%), Positives = 113/329 (34%), Gaps = 47/329 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+ L++  GQ       K+     +AR   L  ++  GPPG+GKT++A  +A 
Sbjct: 3   PLAYRMRPQNLDQVVGQQHLIGPGKIIRRMVEAR--LLSSMILYGPPGIGKTSIASAIAG 60

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR  +     K      A    +    +L +DEIHRL    ++ L P +E  Q+ 
Sbjct: 61  STKYAFRKLNAATDGKKQLQQVAAEGKMSGTVILLLDEIHRLDKTKQDFLLPLLESGQII 120

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           L+    E P         SR  +           +   DR                T  +
Sbjct: 121 LIGATTENPYISISPAIRSRCQIFELKPLSAQDASSAIDR--------------ALTDKE 166

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV--------RDFAEVAHAKTITREI 245
            G     + +TD+A   +  +  G  R     L           +D  +  ++  IT++ 
Sbjct: 167 NGLGNYPVELTDDARSLLIEKGNGDLRSTLNSLELAVLSTKQELKDNHQDTNSIVITQQE 226

Query: 246 ADAALLR--LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
              ++       D  G    D      +   F     G +T +A                
Sbjct: 227 MADSIQMKVQNFDSSGDGHYD------LVSAFQKSIRGSDTDAALH----------YLAK 270

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           +I+ G +      R L  IA++ +G+  P
Sbjct: 271 LIESGDLISIC--RRLSVIAYEDIGLANP 297


>gi|170016573|ref|YP_001727492.1| ATPase [Leuconostoc citreum KM20]
 gi|169803430|gb|ACA82048.1| ATPase [Leuconostoc citreum KM20]
          Length = 430

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 71/323 (21%), Positives = 121/323 (37%), Gaps = 41/323 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP  +E+  GQ     + K+      A+   L  ++  GPPG GKT++A  +A 
Sbjct: 6   PLAYRMRPNKIEDIVGQQHLVGSGKIIWRMVAAK--RLSSMILYGPPGTGKTSIASAIAG 63

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR  +    ++    + A    +    VL +DEIHRL+ + ++ L P +E   + 
Sbjct: 64  SSKYAFRVLNAATDSQKDLQIVAEEAKMSGTVVLLLDEIHRLNKVKQDFLLPHLESGAII 123

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           L+    E P         SR       T++  +T   +D     +     +         
Sbjct: 124 LIGATTENPYINVTPAIRSR-------TQIFQVTPLTEDDIKSAVHRALKDDTH------ 170

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT--ITREIADAALL 251
            G     + +TD+A   +A  + G  R A   L         A  KT  IT  + +  + 
Sbjct: 171 -GLGKYKVTLTDDAMNHLAQATNGDLRSALNGLELAVLSTPTAKDKTIHITLPVIEETVQ 229

Query: 252 RLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           R A+  DK G    D+  ++ + ++  G         A L      IE    P +     
Sbjct: 230 RKAMFADKDGDAHYDV--ISALQKSIRGSDTD-----AALHYAARIIESGDLPILT---- 278

Query: 310 IQRTPRGRLLMPIAWQHLGIDIP 332
                  R L  IA++ +G+  P
Sbjct: 279 -------RRLTVIAYEDIGLANP 294


>gi|288904363|ref|YP_003429584.1| ATPase, AAA family [Streptococcus gallolyticus UCN34]
 gi|306830395|ref|ZP_07463565.1| AAA family ATPase [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|325977359|ref|YP_004287075.1| AAA family ATPase [Streptococcus gallolyticus subsp. gallolyticus
           ATCC BAA-2069]
 gi|288731088|emb|CBI12634.1| putative ATPase, AAA family [Streptococcus gallolyticus UCN34]
 gi|304427420|gb|EFM30522.1| AAA family ATPase [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|325177287|emb|CBZ47331.1| AAA family ATPase [Streptococcus gallolyticus subsp. gallolyticus
           ATCC BAA-2069]
          Length = 422

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 66/320 (20%), Positives = 120/320 (37%), Gaps = 42/320 (13%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            +RP+ +++  GQ       K+     +A    L  ++  GPPG+GKT++A  +A     
Sbjct: 8   RMRPKNIDQVIGQKHLVGEGKIIRRMVEA--NMLSSMILYGPPGIGKTSIASAIAGTTKY 65

Query: 81  NFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137
            FR+ +    +K      A         VL +DEIHRL    ++ L P +E+  + ++  
Sbjct: 66  AFRTFNATTDSKKRLQEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGNIIMIGA 125

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
             E P         SR        ++  L     D     ++    + E       RG  
Sbjct: 126 TTENPFFSVTPAIRSRV-------QIFELEPLSTDDIKTALQTALSDKE-------RGFD 171

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF--AEVAHAKTITREIADAALLRLA- 254
              + +  +A   IA  + G  R A   L        A+    + I+ +  + +L R   
Sbjct: 172 -FDVDIDADALDFIATTTNGDLRSAFNSLDLAVMSTKADDNGLRHISLDTVENSLQRSYI 230

Query: 255 -IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +DK G    D+  L+ + ++  G  V              ++       +I+ G +   
Sbjct: 231 TMDKDGDGHYDV--LSALQKSIRGSDV------------NASLHYAAR--LIEAGDLP-- 272

Query: 314 PRGRLLMPIAWQHLGIDIPH 333
              R L  IA++ +G+  P 
Sbjct: 273 SLARRLTVIAYEDIGLANPD 292


>gi|220926868|ref|YP_002502170.1| recombination factor protein RarA [Methylobacterium nodulans ORS
           2060]
 gi|219951475|gb|ACL61867.1| AAA ATPase central domain protein [Methylobacterium nodulans ORS
           2060]
          Length = 437

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 71/344 (20%), Positives = 109/344 (31%), Gaps = 53/344 (15%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D       +          LRP +L E  GQ              + R   L  ++  
Sbjct: 1   MSDLFASAGLSADAPRPLADRLRPTSLAEVVGQEHLTGEGGALTRLLRGRN--LGSLILW 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIH 115
           GPPG GKTT+A+++ARE  ++F   S        + K  D A          +LF+DEIH
Sbjct: 59  GPPGTGKTTVARLLARETALHFEQISAIFSGVAELRKVFDAARARRAAGQGTLLFVDEIH 118

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +    +   P  ED  + L+    E PS       LSR  ++            L  R
Sbjct: 119 RFNRAQLDAFLPVTEDGTVTLVGATTENPSFELNAALLSRARVLVFRALDEAAIEKLLAR 178

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                                 A    L + + A   +   + G  R A  L   +    
Sbjct: 179 -------------------AEAATGRPLPLDEAARAALLRMADGDGRAALTLAEEIWRST 219

Query: 234 EVAHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
           +    + ++ E     + R A   DK      +L                   ISA    
Sbjct: 220 DA--DEVLSPEALQELIQRRAPVYDKAQEGHYNL-------------------ISALHKT 258

Query: 292 PRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            R +  D    Y+ +            R L+  A + +G+  P 
Sbjct: 259 IRGSDPDAALYYLCRMLDAGEDRLFIARRLVRAAVEDVGLADPQ 302


>gi|69247927|ref|ZP_00604543.1| AAA ATPase, central region [Enterococcus faecium DO]
 gi|257880292|ref|ZP_05659945.1| AAA ATPase [Enterococcus faecium 1,230,933]
 gi|257882146|ref|ZP_05661799.1| AAA ATPase [Enterococcus faecium 1,231,502]
 gi|257885338|ref|ZP_05664991.1| AAA ATPase [Enterococcus faecium 1,231,501]
 gi|257894205|ref|ZP_05673858.1| AAA ATPase [Enterococcus faecium 1,231,408]
 gi|258614762|ref|ZP_05712532.1| recombination factor protein RarA [Enterococcus faecium DO]
 gi|260562406|ref|ZP_05832920.1| AAA ATPase [Enterococcus faecium C68]
 gi|293556301|ref|ZP_06674886.1| ATPase, AAA family [Enterococcus faecium E1039]
 gi|293560717|ref|ZP_06677196.1| ATPase, AAA family [Enterococcus faecium E1162]
 gi|293566152|ref|ZP_06678555.1| ATPase, AAA family [Enterococcus faecium E1071]
 gi|294618776|ref|ZP_06698303.1| ATPase, AAA family [Enterococcus faecium E1679]
 gi|294622228|ref|ZP_06701288.1| ATPase, AAA family [Enterococcus faecium U0317]
 gi|68194629|gb|EAN09116.1| AAA ATPase, central region [Enterococcus faecium DO]
 gi|257814520|gb|EEV43278.1| AAA ATPase [Enterococcus faecium 1,230,933]
 gi|257817804|gb|EEV45132.1| AAA ATPase [Enterococcus faecium 1,231,502]
 gi|257821194|gb|EEV48324.1| AAA ATPase [Enterococcus faecium 1,231,501]
 gi|257830584|gb|EEV57191.1| AAA ATPase [Enterococcus faecium 1,231,408]
 gi|260073330|gb|EEW61671.1| AAA ATPase [Enterococcus faecium C68]
 gi|291590078|gb|EFF21870.1| ATPase, AAA family [Enterococcus faecium E1071]
 gi|291594964|gb|EFF26314.1| ATPase, AAA family [Enterococcus faecium E1679]
 gi|291598270|gb|EFF29363.1| ATPase, AAA family [Enterococcus faecium U0317]
 gi|291601560|gb|EFF31827.1| ATPase, AAA family [Enterococcus faecium E1039]
 gi|291605308|gb|EFF34763.1| ATPase, AAA family [Enterococcus faecium E1162]
          Length = 428

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 67/323 (20%), Positives = 114/323 (35%), Gaps = 41/323 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RPRT++E  GQ       K+      AR   L  ++  GPPG GKT++A  +A 
Sbjct: 4   PLAYRMRPRTIDEVVGQQHLVGEGKIIRRMVDAR--MLSSMILYGPPGTGKTSIASAIAG 61

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR  +    +K    + A    +    +L +DE+HRL    ++ L P +E  ++ 
Sbjct: 62  STNYAFRMLNAATDSKKDLQVVAEEAKMSGTVILLLDEVHRLDKTKQDFLLPHLESGRII 121

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           L+    E P         SR  +            PL +      +     +E      +
Sbjct: 122 LIGATTENPYITINPAIRSRTQIFEV--------KPLTE------QDIQLAVEHALRDKE 167

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI--TREIADAALL 251
           RG     + + ++A   ++  + G  R A   L              I  T  I +  + 
Sbjct: 168 RGLGQQAIQLDEDALLHLSRATNGDLRSALNGLELATLSTPSDKEGRIHLTLSIIEECVQ 227

Query: 252 RLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           R A   DK G    D      +   F     G +  +A                +++ G 
Sbjct: 228 RKALTHDKNGDAHYD------VISAFQKSIRGSDVDAALH----------YLARLVEAGD 271

Query: 310 IQRTPRGRLLMPIAWQHLGIDIP 332
           +      R LM I ++ +G+  P
Sbjct: 272 LASIC--RRLMVIGYEDIGLGNP 292


>gi|312139551|ref|YP_004006887.1| ATPase AAA [Rhodococcus equi 103S]
 gi|311888890|emb|CBH48203.1| putative AAA ATPase [Rhodococcus equi 103S]
          Length = 468

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 77/322 (23%), Positives = 120/322 (37%), Gaps = 43/322 (13%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            +RP  L E  GQ    +         +        VL  GPPG GKTTLA +++   G 
Sbjct: 48  RMRPAALSEVVGQQHLLAPGAPLRRLVEGSGA--SSVLLYGPPGTGKTTLASLISGATGR 105

Query: 81  NFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
            F + S        +    +LA       ++ VLFIDE+HR S   ++ L  A+E+  + 
Sbjct: 106 KFEALSALSAGVKEVRGVIELARRRLLQGEQTVLFIDEVHRFSKTQQDALLAAVENRIVL 165

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           L+    E PS   V   LSR                      + ++L     +D++ +++
Sbjct: 166 LVAATTENPSFSVVSPLLSR---------------------SLVLQLQSLTSDDIRLVIE 204

Query: 194 RGAKLTGLAVTDEAACEIAMRS-RGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           R             + EIA  +     R+A    RR     E A    + R     ALL 
Sbjct: 205 RA---RADERGLGGSVEIADDALEHLVRLAAGDARRALTALEAAAGTALDRTDERPALLD 261

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           L   +   D+  +RY          G    + ISA +   R +  D    Y+ +      
Sbjct: 262 LETVESSVDKAAVRY-------DRDGDQHYDVISAFIKSIRGSDVDAALHYLARMITAGE 314

Query: 313 TPR--GRLLMPIAWQHLGIDIP 332
            PR   R L+  A + +G+  P
Sbjct: 315 DPRFIARRLVVHASEDIGMADP 336


>gi|313891077|ref|ZP_07824696.1| ATPase, AAA family [Streptococcus pseudoporcinus SPIN 20026]
 gi|313120440|gb|EFR43560.1| ATPase, AAA family [Streptococcus pseudoporcinus SPIN 20026]
          Length = 423

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 65/325 (20%), Positives = 114/325 (35%), Gaps = 42/325 (12%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           D     +RP+T+ E  GQ       K+     +A    L  ++  GPPG+GKT++A  +A
Sbjct: 3   DNLALRMRPKTISEVIGQEHLVGEGKIIRRMVEA--NMLSSMILYGPPGIGKTSIASAIA 60

Query: 76  RELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
                 FR+ +     K      A         VL +DEIHRL    ++ L P +E+  +
Sbjct: 61  GTTKYAFRTFNATTDTKKRLQEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGNI 120

Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            ++    E P         SR  +                   I  +   Y  E      
Sbjct: 121 IMIGATTENPFFSVTPAIRSRVQIFELEPLSNEAIKKAIAT-AISDKERGYSFE------ 173

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA--EVAHAKTITREIADAAL 250
                   + +  +A   IA  + G  R A   L         +    + I+ +  + +L
Sbjct: 174 --------ITLDSDALDFIATATNGDLRSAYNSLDLAVMSTKEDSTGKRHISLDTVENSL 225

Query: 251 LRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            R    +DK G    D+  L+ + ++  G  V              ++       +++ G
Sbjct: 226 QRSYITMDKNGDGHYDV--LSALQKSIRGSDV------------NASLHYAAR--LVEAG 269

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIPH 333
            +      R L  IA++ +G+  P 
Sbjct: 270 DLP--SLARRLTVIAYEDIGLANPD 292


>gi|295669242|ref|XP_002795169.1| DNA-dependent ATPase MGS1 [Paracoccidioides brasiliensis Pb01]
 gi|226285103|gb|EEH40669.1| DNA-dependent ATPase MGS1 [Paracoccidioides brasiliensis Pb01]
          Length = 539

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 69/348 (19%), Positives = 120/348 (34%), Gaps = 69/348 (19%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEAC--SNLKVFIEAAKARAEALDHVLFVG 61
           +   +S  +         +RP+TL++  GQ        L+  IE      + +  ++  G
Sbjct: 109 KRSRVSNALRNAAPLAERMRPQTLDDVCGQELVGPSGVLRGLIE-----QDRVPSMVLWG 163

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEI 114
             G GKTT+A+V+A+ +G  F   +    +   +   L             + +LF DEI
Sbjct: 164 GAGTGKTTIARVIAKMVGSRFVEINS-TNSGVAECKKLFAEARNELSLSGKKTILFCDEI 222

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR S   +++    +E  Q+ L+    E PS +     LSR                   
Sbjct: 223 HRFSKSQQDVFLSPVESGQITLIGTTTENPSFKVQNALLSRCRTFTL------------- 269

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAV------TDEAACEIAMRSRGTPRIAGRLL 226
                        +D+  I+ R  ++ G          DE    +A  + G  R +  LL
Sbjct: 270 --------AKLTDQDIIMILNRALEVEGPNYSPSSLVDDELIKYLAAFADGDARTSLNLL 321

Query: 227 RRVRDFAEVAHAKTITREIADAALLRL-AIDKMGFDQLDLRYLTMIARNFGGGPVGIETI 285
               D +       +T++    +L R    D+ G    D                   TI
Sbjct: 322 ELAMDLSRREG---MTKDELKKSLTRTLVYDRAGDQHYD-------------------TI 359

Query: 286 SAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
           SA     R +  D    Y+ +       P    R L+ +A + +G+  
Sbjct: 360 SAFHKSIRGSDPDAALYYLARMIQSGEDPLYIARRLIVVASEDIGLAD 407


>gi|237836221|ref|XP_002367408.1| ATPase, AAA family domain containing protein [Toxoplasma gondii
           ME49]
 gi|211965072|gb|EEB00268.1| ATPase, AAA family domain containing protein [Toxoplasma gondii
           ME49]
 gi|221505904|gb|EEE31539.1| werner helicase interacting protein, putative [Toxoplasma gondii
           VEG]
          Length = 1101

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 61/246 (24%), Positives = 92/246 (37%), Gaps = 40/246 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP +LEE+ GQ       +  I         L  ++  GPPG GKTT+A +  R
Sbjct: 604 PLAERLRPASLEEYVGQRGCIQGGRGSIRELLEAGH-LPSLILWGPPGCGKTTIALLAGR 662

Query: 77  ELGVNFRSTSGP---------VIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSII 120
            +G    + S P         V     D+  ++          + + VLF+DEIHR +  
Sbjct: 663 SVGKKNSALSLPPPVFKKMSAVTCGVNDVRKVVQEALTLRATTKQKTVLFLDEIHRFNKA 722

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++ L P +E   + L+    E PS    +  LSR  +                      
Sbjct: 723 QQDALLPHVETGTITLIGATTENPSFEVNRALLSRCRVCKL------------------- 763

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
                  EDL TI+QR AK   + +T+ A   I   + G  R A  +L         A+ 
Sbjct: 764 --EPLTEEDLTTILQRAAKEENVTITEAAVRVICRLADGDARRALNMLENAIHHERTANE 821

Query: 239 KTITRE 244
              T +
Sbjct: 822 NKATND 827


>gi|307705464|ref|ZP_07642319.1| ATPase family associated with various cellular activities (AAA)
           family protein [Streptococcus mitis SK597]
 gi|307620999|gb|EFO00081.1| ATPase family associated with various cellular activities (AAA)
           family protein [Streptococcus mitis SK597]
          Length = 423

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 67/327 (20%), Positives = 117/327 (35%), Gaps = 44/327 (13%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            D     +RP+T+++  GQ       K+     +A    L  ++  GPPG+GKT++A  +
Sbjct: 2   PDNLALRMRPKTIDQVIGQEHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           A      FR+ +  V +K      A         VL +DEIHRL    ++ L P +E   
Sbjct: 60  AGTTKYAFRTFNATVDSKKRLQEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGL 119

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTR-VGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           + ++    E P         SR  +          +   LQ    +      ++      
Sbjct: 120 VIMIGATTENPFFSVTPAIRSRVQIFELEPLSNQDVKEALQ--IALSNPERCFD------ 171

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI--TREIADA 248
                     + + D+A   IA  + G  R A   L                 T +I + 
Sbjct: 172 --------FPVELDDDALDFIATSTNGDLRSAFNSLDLAVLSTPENDKGIRHITLDIMEN 223

Query: 249 ALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           +L R    +DK G    D+  L+ + ++  G  V              ++       +I+
Sbjct: 224 SLQRSYITMDKDGDGHYDV--LSALQKSIRGSDVDA------------SLHYAAR--LIE 267

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            G +      R L  IA++ +G+  P 
Sbjct: 268 AGDLP--SLARRLTVIAYEDIGLANPE 292


>gi|300778766|ref|ZP_07088624.1| replication-associated recombination protein A [Chryseobacterium
           gleum ATCC 35910]
 gi|300504276|gb|EFK35416.1| replication-associated recombination protein A [Chryseobacterium
           gleum ATCC 35910]
          Length = 425

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 70/338 (20%), Positives = 121/338 (35%), Gaps = 58/338 (17%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEA---CSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           ++Q       LRP+TL +  GQ         ++  IE        L+ ++F GPPG GKT
Sbjct: 1   MNQNIPLAEKLRPKTLNDVLGQEHLTGDKGTIRKMIE-----NNTLNSLIFWGPPGTGKT 55

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIV 121
           TLA++++ + G  F   S  V +   D+  ++ + + +        +LFIDEIHR +   
Sbjct: 56  TLAEIISEQSGRKFYKLSA-VSSGVKDVRDVIEDAKKQNLFSGKSPILFIDEIHRFNKSQ 114

Query: 122 EEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           ++ L  A+E   + L+    E PS   V   LSR  +             L D       
Sbjct: 115 QDSLLHAVEKGWIVLIGATTENPSFEVVSALLSRSQVYILKALSYEKLEELID------- 167

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
                        +R  K  G              S G  R     +  V +  + +  K
Sbjct: 168 ----------IASERYNKDEGTDFKILEKEAFIQYSGGDARKLINSVELVLNQYKNSDTK 217

Query: 240 TITREIADAALL--RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
            I        L       DK G    D   ++   ++  GG            +P  A+ 
Sbjct: 218 EILNSDVLEVLQETMALYDKNGEQHYD--IISAFIKSMRGG------------DPNGAV- 262

Query: 298 DLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                ++ +        +   R ++ +A + +G+  P+
Sbjct: 263 ----YWLARMIAGGEDIKFIARRMLILAAEDVGLANPN 296


>gi|294659828|ref|XP_462254.2| DEHA2G16302p [Debaryomyces hansenii CBS767]
 gi|199434262|emb|CAG90750.2| DEHA2G16302p [Debaryomyces hansenii]
          Length = 786

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 78/362 (21%), Positives = 138/362 (38%), Gaps = 58/362 (16%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           +   +  +      E      LRP++L+E+ GQ +      +     K  ++ +   +  
Sbjct: 177 LTKNQEFMRLKREAELPLAQRLRPKSLDEYYGQEKLVGENGILKNIIK--SDQIPSFILW 234

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDE 113
           G PG+GKT+LA+++++     F   SG     A  L  + T           + +LF+DE
Sbjct: 235 GVPGVGKTSLARIISQTSNCKFLEVSGAE-GNAKRLREVFTMADNERRLTGRKTILFLDE 293

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +  V+++L P +E   + ++    E PS       LSR            +  PL 
Sbjct: 294 IHRFNKAVQDLLLPVIEKGIVTVIGATTENPSFTLNNALLSRMHT--------FIMEPLL 345

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGA-----------KLTGLAVTDEAACEIAMRSRGTPR 220
                         ED+  I+ RG             L  +A+  +A   IA  S G  R
Sbjct: 346 -------------KEDIVKIINRGLLVVNKSRKLVFGLHLIALDKDAIDYIASLSAGDSR 392

Query: 221 IAGRLLRRVRDF-AEVAHAKTITREIADAALLR---LAIDKMGFDQL-----DLRYLTMI 271
           +A  +L  +  + + V +++    E  + A+     L + K+    L        Y  M 
Sbjct: 393 VALNILESINAYLSSVQYSRFSGYEEGEKAIQIPKTLGVIKVCLQNLKPLLETRNYQKM- 451

Query: 272 ARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGI 329
                 G    +TISA     R +  D    Y+++       P    R ++ IA + +G+
Sbjct: 452 --YDKQGESHYDTISAFHKSVRGSDADAAVFYLVKMLVGGEDPLFIARRMIVIASEDVGL 509

Query: 330 DI 331
             
Sbjct: 510 RD 511


>gi|190149555|ref|YP_001968080.1| holliday junction ATP-dependent DNA helicase RuvB [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|189914686|gb|ACE60938.1| holliday junction ATP-dependent DNA helicase RuvB [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
          Length = 137

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 63/126 (50%), Positives = 88/126 (69%), Gaps = 1/126 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + ++S +   +E+     +RP+ L ++ GQ      +++FI+AAK R EALDH+L 
Sbjct: 1   MIEADRIISASPKREEEIIDRAIRPKLLADYVGQPSVREQMEIFIKAAKLRDEALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEI     
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPYDVLFIDEIPAYHR 120

Query: 120 IVEEIL 125
            +++  
Sbjct: 121 QLKKCF 126


>gi|24380393|ref|NP_722348.1| recombination factor protein RarA [Streptococcus mutans UA159]
 gi|24378415|gb|AAN59654.1|AE015027_12 putative ATPase [Streptococcus mutans UA159]
          Length = 427

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 69/320 (21%), Positives = 116/320 (36%), Gaps = 42/320 (13%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            +RPR + E  GQ       K+      A    L  ++  GPPG+GKT++A  +A     
Sbjct: 14  RMRPRDISEVIGQKHLVGQGKIISRMVTA--NRLSSMILYGPPGIGKTSIASAIAGTTKF 71

Query: 81  NFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137
            FR+ +     K      A         VL +DEIHRL    ++ L P +E+ Q+ ++  
Sbjct: 72  AFRTFNATTDTKKRLQEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGQIIMIGA 131

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
             E P         SR  +            PL +                    +RG  
Sbjct: 132 TTENPFFSVTPAIRSRVQIFEL--------EPLSNEDIKKAMQAALT------DTERGFD 177

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE--VAHAKTITREIADAALLRLA- 254
              + + D+A   IA  + G  R A   L       +     ++ IT +  + +L R   
Sbjct: 178 -FEVKLDDDALDFIAQATNGDLRSAYNSLDLAIMSTQPDDNGSRHITLDTVENSLQRSYI 236

Query: 255 -IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +DK G    D+  L+ + ++  G  V              ++       +I+ G +   
Sbjct: 237 TMDKDGDGHYDV--LSALQKSIRGSDV------------NASLHYAAR--LIEAGDLP-- 278

Query: 314 PRGRLLMPIAWQHLGIDIPH 333
              R L  IA++ +G+  P 
Sbjct: 279 SLARRLTIIAYEDIGLANPD 298


>gi|76787547|ref|YP_330532.1| recombination factor protein RarA [Streptococcus agalactiae A909]
 gi|77405039|ref|ZP_00782139.1| ATPase, AAA family [Streptococcus agalactiae H36B]
 gi|76562604|gb|ABA45188.1| ATPase, AAA family [Streptococcus agalactiae A909]
 gi|77176333|gb|EAO79102.1| ATPase, AAA family [Streptococcus agalactiae H36B]
          Length = 422

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 70/325 (21%), Positives = 117/325 (36%), Gaps = 42/325 (12%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           D     +RPR + E  GQ     N K+      A    L  ++  GPPG+GKT++A  +A
Sbjct: 3   DNLALRMRPRNINEIIGQQHLVGNGKIIDRMVAA--NMLSSMILYGPPGIGKTSIASAIA 60

Query: 76  RELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
                 FR+ +  V +K      A         VL +DEIHRL    ++ L P +E+  +
Sbjct: 61  GTTKYAFRTFNATVDSKKRLQEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGNI 120

Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            ++    E P         SR  +            PL +            I+   +  
Sbjct: 121 IMIGATTENPFFSVTPAIRSRVQIFEL--------EPLSNEDIKKA------IQLAISDK 166

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT--REIADAAL 250
           +RG     + + DEA   I   + G  R A   L             +     E  + +L
Sbjct: 167 ERGFPFL-VTIDDEALDFIITATNGDLRSAYNSLDLAVMSTSPNEDGSRHISLETMENSL 225

Query: 251 LRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            R    +DK G    D+  L+ + ++  G  V              ++       +++ G
Sbjct: 226 QRSYITMDKNGDGHYDV--LSALQKSIRGSDV------------NASLHYAAR--LVEAG 269

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIPH 333
            +      R L  IA++ +G+  P 
Sbjct: 270 DLP--SLARRLTIIAYEDIGLANPE 292


>gi|332670524|ref|YP_004453532.1| AAA ATPase central domain-containing protein [Cellulomonas fimi
           ATCC 484]
 gi|332339562|gb|AEE46145.1| AAA ATPase central domain protein [Cellulomonas fimi ATCC 484]
          Length = 458

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 78/328 (23%), Positives = 129/328 (39%), Gaps = 43/328 (13%)

Query: 21  LLRPRTLEEFTGQVEAC---SNLKVFIEAA--KARAEALDHVLFVGPPGLGKTTLAQVVA 75
            +RPR+L+E  GQ       S L+  +E A   AR  A   V+  GPPG GKTTLA +VA
Sbjct: 26  RMRPRSLDEVAGQEHLLVAGSPLRRLVEPATEAARRAAPSSVVLWGPPGTGKTTLAYLVA 85

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPA 128
              G  F   S  V A   D+ A++ +   R        VLF+DE+HR +   ++ L P+
Sbjct: 86  TTSGRRFVELSA-VTAGVKDVRAVIDDARRRLATDGGETVLFVDEVHRFTKAQQDALLPS 144

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           +E+  + L+    E PS                +  + L   PL               +
Sbjct: 145 VENRWVTLVAATTENPSFSVNS--------PLLSRSLLLTLQPL-------------STQ 183

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           D++ +V+R   +      D +            R+AG   R+     E A    ++  + 
Sbjct: 184 DVRRLVRRA--VEDDRGLDGSVTLAEDAEEHLLRLAGGDARKALTILEAAAGAALSGPVP 241

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           +     + +D    + ++    T   R    G    + ISA +   R +  D    Y+ +
Sbjct: 242 EDGDGPVLVD---LETVERAIDTAAVRYDRDGDQHYDVISAFIKSMRGSDVDAALHYLAR 298

Query: 307 QGFIQRTPR--GRLLMPIAWQHLGIDIP 332
                  PR   R ++  A + +G+  P
Sbjct: 299 MVAAGEDPRFIARRIVIAAAEDVGMADP 326


>gi|294101443|ref|YP_003553301.1| AAA ATPase central domain protein [Aminobacterium colombiense DSM
           12261]
 gi|293616423|gb|ADE56577.1| AAA ATPase central domain protein [Aminobacterium colombiense DSM
           12261]
          Length = 424

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 66/330 (20%), Positives = 119/330 (36%), Gaps = 45/330 (13%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E      +RP +L++F GQ    +      +    ++  +   +  GPPG+GKTTL +++
Sbjct: 8   ERPLADRMRPSSLDDFVGQNHLLAPGTPLRQ--ILQSGKVPSCVLYGPPGVGKTTLVRLM 65

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVL-------FIDEIHRLSIIVEEILYP 127
           A     +    +  V AK  +L  L+   ++  +L       F+DEI+  +   +  L P
Sbjct: 66  AMVTERSLLEINA-VSAKVSELRDLVEEAKNLKILSGSAAIAFVDEIYHFNKSQQNALLP 124

Query: 128 AMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           ++E   + L+    E P     K  LSR  +            PL +   + I     + 
Sbjct: 125 SVEKGDIILVGTTTENPWFEINKTLLSRLVVFQL--------KPLAEEDLVQILYKALKD 176

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           E      ++G     LAV+++    +A  + G  R A   L  +      + A  +T   
Sbjct: 177 E------EKGLGALKLAVSEDVITVLAKMAGGDARQALTRLELLASSVAASGAAELTMA- 229

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
                            +D    +   R           ISA +   R +  D    ++ 
Sbjct: 230 ----------------HVDRLIPSASIRFDPKADDHYAIISALIKSMRGSDPDAALYWLA 273

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +        R   R LM  A + +G+  P 
Sbjct: 274 RLIEGGEDIRFICRRLMIFAAEDVGLADPQ 303


>gi|322386659|ref|ZP_08060284.1| crossover junction endodeoxyribonuclease [Streptococcus cristatus
           ATCC 51100]
 gi|321269332|gb|EFX52267.1| crossover junction endodeoxyribonuclease [Streptococcus cristatus
           ATCC 51100]
          Length = 422

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 65/326 (19%), Positives = 118/326 (36%), Gaps = 42/326 (12%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            +     +RP ++++  GQ       K+     +A    L  ++  GPPG+GKT++A  +
Sbjct: 2   PENLALRMRPTSIDQIIGQQHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           A      FR+ +  V +K      A         VL +DEIHRL    ++ L P +E   
Sbjct: 60  AGTTKYAFRTFNATVDSKKRLQEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGL 119

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + ++    E P         SR  +            PL +             +     
Sbjct: 120 VIMIGATTENPFFSVTPAIRSRVQIFEL--------EPLSNDDIRTAIQLALTDK----- 166

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI--TREIADAA 249
            +RG     + + DEA   IA+ + G  R A   L                 T ++ + +
Sbjct: 167 -ERGFD-FPVELDDEALDFIAISTNGDLRSAYNSLDLAVLSTPEDGKGIRHITLDVMENS 224

Query: 250 LLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           L +    +DK G    D+  L+ + ++  G  V              ++       +++ 
Sbjct: 225 LQKSYITMDKDGDGHYDV--LSALQKSIRGSDV------------NASLHYAAR--LVEA 268

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
           G +      R L  IA++ +G+  P 
Sbjct: 269 GDLP--SLARRLTVIAYEDIGLANPD 292


>gi|257899569|ref|ZP_05679222.1| AAA ATPase [Enterococcus faecium Com15]
 gi|257837481|gb|EEV62555.1| AAA ATPase [Enterococcus faecium Com15]
          Length = 428

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 68/323 (21%), Positives = 114/323 (35%), Gaps = 41/323 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RPRT++E  GQ       K+      AR   L  ++  GPPG GKT++A  +A 
Sbjct: 4   PLAYRMRPRTIDEVVGQQHLVGEGKIIRRMVDAR--MLSSMILYGPPGTGKTSIASAIAG 61

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR  +    +K    + A    +    +L +DE+HRL    ++ L P +E  ++ 
Sbjct: 62  STNYAFRMLNAATDSKKDLQVVAEEAKMSGTVILLLDEVHRLDKTKQDFLLPHLESGRII 121

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           L+    E P         SR  +            PL +      +     +E      +
Sbjct: 122 LIGATTENPYITINPAIRSRTQIFEV--------KPLTE------QDIQLAVEHALKDKE 167

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI--TREIADAALL 251
           RG     + + +EA   ++  + G  R A   L              I  T  I +  + 
Sbjct: 168 RGLGQQAIQLDEEALLHLSRATNGDLRSALNGLELAARSTPPDKEGKIHLTLSIIEECVQ 227

Query: 252 RLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           R A   DK G    D      +   F     G +  +A                +++ G 
Sbjct: 228 RKALTHDKNGDAHYD------VISAFQKSIRGSDVDAALH----------YLARLVEAGD 271

Query: 310 IQRTPRGRLLMPIAWQHLGIDIP 332
           +      R LM I ++ +G+  P
Sbjct: 272 LASIC--RRLMVIGYEDIGLGNP 292


>gi|300361432|ref|ZP_07057609.1| AAA family ATPase [Lactobacillus gasseri JV-V03]
 gi|300354051|gb|EFJ69922.1| AAA family ATPase [Lactobacillus gasseri JV-V03]
          Length = 432

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 63/323 (19%), Positives = 109/323 (33%), Gaps = 36/323 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+ L+E  GQ     N K+     +A+   L  ++  GPPG+GKT++A  +A 
Sbjct: 3   PLAYRMRPKNLDEVVGQEHLVGNKKIIRRMVEAK--LLSSMILYGPPGIGKTSIASAIAG 60

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR  +     K    + A    +    +L +DEIHRL    ++ L P +E   + 
Sbjct: 61  STKYAFRKLNAATDTKKDLQIVAEEGKMSGTVILLLDEIHRLDKTKQDFLLPLLESGNII 120

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           L+    E P         SR  +           +   DR                T  +
Sbjct: 121 LIGATTENPYISISPAIRSRCQIFELHRLKSTDISKAIDR--------------ALTDSE 166

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR-RVRDFAEVAHAKTITREIADAALLR 252
            G     + +T +A   +  +  G  R     L   V    +    K+   ++       
Sbjct: 167 NGLGKYNVELTKDARNLLIDKGNGDLRSTLNALELAVLSTDQEKKTKSPKDKLIIDKAEM 226

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY---MIQQGF 309
               +      D             G    + +SA     R +  D    Y   + + G 
Sbjct: 227 QDSIQFKSQSYD-----------ASGDGHYDLVSAFQKSIRGSDTDAALYYLGNLCESGD 275

Query: 310 IQRTPRGRLLMPIAWQHLGIDIP 332
           +      R L+ IA++ +G+  P
Sbjct: 276 LVAIC--RRLLVIAYEDIGLANP 296


>gi|325963405|ref|YP_004241311.1| recombination protein MgsA [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469492|gb|ADX73177.1| Recombination protein MgsA [Arthrobacter phenanthrenivorans Sphe3]
          Length = 472

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 77/329 (23%), Positives = 118/329 (35%), Gaps = 45/329 (13%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARA------EALDHVLFVGPPGLGKTTLAQVV 74
            +RPRTL+E  GQ           + A               ++  GPPG GKTTLA V+
Sbjct: 40  RMRPRTLDEVVGQQHLLGQGSPLRQLAAGAGADTSGPAGPTSLILWGPPGTGKTTLAHVI 99

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYP 127
           AR  G  F   S  + A   D+  ++          +   VLF+DEIHR +   ++ L P
Sbjct: 100 ARGPGRKFVELSA-ITAGVKDVRRVMDEALTARDLYKTTTVLFLDEIHRFNKAQQDALLP 158

Query: 128 AMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
            +E+  + L+    E PS   V            +  + L   PL D             
Sbjct: 159 GVENRWVVLVAATTENPSFSVVSP--------LLSRSLLLTLRPLTD------------- 197

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
            D++ ++QR   +             A       R++G   RR     E A A     + 
Sbjct: 198 ADIEGLIQRA--VADPRGLSGKVDLSAEALEHLVRLSGGDARRALTALEAA-AGVAFGDA 254

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
            DA    +A+D       +        R    G    + ISA +   R +  D    Y+ 
Sbjct: 255 DDAVDGPVAVD---LKHTERALDVAAVRYDRAGDQHYDVISAFIKSIRGSDVDAALHYLA 311

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           +       PR   R +M  A + +G+  P
Sbjct: 312 RMLEAGEDPRFVARRIMISAAEDVGMADP 340


>gi|312864415|ref|ZP_07724648.1| recombination factor protein RarA [Streptococcus downei F0415]
 gi|311100136|gb|EFQ58347.1| recombination factor protein RarA [Streptococcus downei F0415]
          Length = 426

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 64/320 (20%), Positives = 114/320 (35%), Gaps = 42/320 (13%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            +RP+T+++  GQ       K+     +A    L  ++  GPPG+GKT++A  +A     
Sbjct: 8   RMRPKTIDDIIGQEHMVGQGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAIAGTTKF 65

Query: 81  NFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137
            FR+ +    +K      A         VL +DEIHRL    ++ L P +E+  + ++  
Sbjct: 66  AFRTFNATTDSKKRLQEIAEEAKFSGGLVLMLDEIHRLDKTKQDFLLPLLENGNIIMIGA 125

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
             E P         SR  +                R  I  +   ++ +           
Sbjct: 126 TTENPFFSVTPAIRSRVQIFELEPLSPDDIKTALKR-AISDKERGFDFD----------- 173

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK--TITREIADAALLRLA- 254
              + + D+A   IA  + G  R A   L       +        I+ +  + +L R   
Sbjct: 174 ---IKLDDDALDFIATATNGDLRSALNSLELAVLSTQPNQEGLRHISLDTVENSLQRSYI 230

Query: 255 -IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +DK G    D+  L+ + ++  G  V      A        +  L+             
Sbjct: 231 TMDKNGDGHYDV--LSALQKSIRGSDVNASLHYAARLIEAGDLPSLV------------- 275

Query: 314 PRGRLLMPIAWQHLGIDIPH 333
              R L  IA++ +G+  P 
Sbjct: 276 ---RRLTVIAYEDIGLANPD 292


>gi|58337096|ref|YP_193681.1| recombination factor protein RarA [Lactobacillus acidophilus NCFM]
 gi|227903667|ref|ZP_04021472.1| crossover junction endodeoxyribonuclease [Lactobacillus acidophilus
           ATCC 4796]
 gi|58254413|gb|AAV42650.1| chromosomal segregation helicase [Lactobacillus acidophilus NCFM]
 gi|227868554|gb|EEJ75975.1| crossover junction endodeoxyribonuclease [Lactobacillus acidophilus
           ATCC 4796]
          Length = 439

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 65/322 (20%), Positives = 113/322 (35%), Gaps = 33/322 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+ ++E  GQ       K+     +AR   L  ++  GPPG+GKT++A  +A 
Sbjct: 3   PLAYRMRPKKIDEVVGQQHLIGPGKIIRRMVEAR--ILSSMILYGPPGIGKTSIASAIAG 60

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR  +     K      A    +    +L +DEIHRL    ++ L P +E  Q+ 
Sbjct: 61  STKYAFRKLNAATDGKKQLQQVAEEGKMSGTVILLLDEIHRLDKTKQDFLLPLLESGQII 120

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           L+    E P         SR  +           +   DR                   +
Sbjct: 121 LIGATTENPYISISPAIRSRCQIFELKPLSAEDASKAIDR--------------ALKDTE 166

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
            G     + +T++A   +  +  G  R     L      A ++  + +     D + + +
Sbjct: 167 NGLGKYKVQLTEDARDLLIEKGNGDLRTTLNSLE----LAVLSTKQELKDNHKDESTILI 222

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY---MIQQGFI 310
              +M          T I      G    + +SA     R +  D    Y   +I+ G +
Sbjct: 223 TQQEMADS-----IQTKIQNFDASGDGHYDLVSAFQKSIRGSDTDAALHYLARLIESGDL 277

Query: 311 QRTPRGRLLMPIAWQHLGIDIP 332
                 R L  IA++ +G+  P
Sbjct: 278 ISIC--RRLTVIAYEDIGLANP 297


>gi|322377488|ref|ZP_08051979.1| ATPase, AAA family [Streptococcus sp. M334]
 gi|321281688|gb|EFX58697.1| ATPase, AAA family [Streptococcus sp. M334]
          Length = 423

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 68/326 (20%), Positives = 118/326 (36%), Gaps = 42/326 (12%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            D     +RP+T+++  GQ       K+     +A    L  ++  GPPG+GKT++A  +
Sbjct: 2   PDNLALRMRPKTIDQVIGQEHLVGQGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           A      FR+ +  V +K      A         VL +DEIHRL    ++ L P +E   
Sbjct: 60  AGTTKYAFRTFNATVDSKKRLQEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGL 119

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + ++    E P         SR  +            PL ++                  
Sbjct: 120 VIMIGATTENPFFSVTPAIRSRVQIFEL--------EPLSNQEVKEALQIALSNP----- 166

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI--TREIADAA 249
            +RG     + + ++A   IA  + G  R A   L                 T +I + +
Sbjct: 167 -ERGFD-FPVELDEDALDFIATSTNGDLRSAFNSLDLAVLSTPENDKGIRHITLDIMENS 224

Query: 250 LLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           L R    +DK G    D+  L+ + ++  G  V              ++       +I+ 
Sbjct: 225 LQRSYITMDKDGDGHYDV--LSALQKSIRGSDVDA------------SLHYAAR--LIEA 268

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
           G +      R L  IA++ +G+  P 
Sbjct: 269 GDLP--SLARRLTVIAYEDIGLANPE 292


>gi|224476725|ref|YP_002634331.1| recombination factor protein RarA [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222421332|emb|CAL28146.1| conserved hypothetical protein [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 426

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 69/325 (21%), Positives = 127/325 (39%), Gaps = 39/325 (12%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
             +   S +RP+ L+E   Q        +      ++   L  ++F GPPG+GKT++A+ 
Sbjct: 2   NNEPLASRMRPQNLDEIISQQHLVGPKGIIRRMVDSK--RLTSMIFYGPPGIGKTSIAKA 59

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMED 131
           +A      FR  +  V     D+  ++   +   + +L +DEIHRL    ++ L P +E+
Sbjct: 60  IAGSTQFKFRQLNA-VTNTKKDMQMVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLEN 118

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
            ++ +++G   S     IN       A  +R  +      D   I I      +E   + 
Sbjct: 119 GKI-VLIGATTSNPYHAIN------PAIRSRAQIFELYALDENDIRIA-----LERALSE 166

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR--DFAEVAHAKTITREIADAA 249
             RG     + + D+A    + +S+G  R A   L         +      IT + A+  
Sbjct: 167 KDRGLADYNVNIDDDALQYFSTQSQGDVRAALNALELAVLSTNPDENGEVHITLQDAEDC 226

Query: 250 LLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           L + +   DK G    D      +   F     G +T +A                +I+ 
Sbjct: 227 LQKGSFMSDKDGDMHYD------VMSAFQKSIRGSDTDAALH----------YLARLIEA 270

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIP 332
           G +      R L+ I+++ +G+  P
Sbjct: 271 GDLPTI--ARRLLVISYEDIGLASP 293


>gi|262380591|ref|ZP_06073745.1| recombination factor protein RarA [Acinetobacter radioresistens
           SH164]
 gi|262298037|gb|EEY85952.1| recombination factor protein RarA [Acinetobacter radioresistens
           SH164]
          Length = 423

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 71/325 (21%), Positives = 112/325 (34%), Gaps = 53/325 (16%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
             LRPR L E  GQ           +        L  ++F GPPG+GKTT+A ++A+ + 
Sbjct: 10  ERLRPRDLSEIIGQDHLLGEQAPLRQMIDQGH--LPSIIFWGPPGVGKTTIALLLAQAVD 67

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
             F S S  +     +L  ++    D    V+FIDEIHR +   ++ L  A+E  ++ L+
Sbjct: 68  RPFISLSA-LNTGVKELREIIAESGDLLTPVVFIDEIHRFNKSQQDALLNAVEKGKITLI 126

Query: 138 --VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP---IRLNFYEIEDLKTIV 192
               E PS       LSR  +             L D+       ++    +IE+   ++
Sbjct: 127 GATTENPSFEVNGALLSRCQVYTLNILDSESIQTLLDKALQTDEFLKERHIQIEEYDALI 186

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           Q  A                       R A  LL  +    E      I   I      +
Sbjct: 187 QFAAG--------------------DARKALNLLDLIASTFESGLENIINNAIVVKVAQQ 226

Query: 253 L--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
                DK G    DL                   +SA +   R +  D    +M +    
Sbjct: 227 NIARYDKSGEQHYDL-------------------VSAFIKSIRGSDPDATLYWMARMLKG 267

Query: 311 QRTPR--GRLLMPIAWQHLGIDIPH 333
              P    R ++  A + +G   P+
Sbjct: 268 GEDPVFIARRMLIAASEDIGNSNPN 292


>gi|213966130|ref|ZP_03394317.1| recombination factor protein RarA [Corynebacterium amycolatum SK46]
 gi|213951228|gb|EEB62623.1| recombination factor protein RarA [Corynebacterium amycolatum SK46]
          Length = 488

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 75/325 (23%), Positives = 126/325 (38%), Gaps = 53/325 (16%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            +RPR L+E  GQ    +         +   +    V+  GPPG GKTTLA +++   G 
Sbjct: 67  RMRPRNLDEVVGQDHLLAPGAPLRRLVEGGGDT--SVILFGPPGTGKTTLASLISAATGR 124

Query: 81  NFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +F + S  + A   ++ A++            + VLFIDE+HR S   ++ L  A+E+  
Sbjct: 125 HFEALSA-LNAGVKEVRAVIDTARRTLVNQGIQTVLFIDEVHRFSKTQQDALLSAVENRI 183

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + L+    E PS   V   LSR  L+            L DR                  
Sbjct: 184 VLLVAATTENPSFSVVSPLLSRSLLLQLQPLDDGAVGTLIDRALTD-------------- 229

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
            +RG     +++TD+A  ++   + G  R +   L    +   VA  + IT E    ++ 
Sbjct: 230 -ERGLNG-RVSMTDDARKQLIALAAGDARRSLTYLEAAAE--AVADGEQITAESLANSIN 285

Query: 252 R--LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           R  +  D+ G    D+                    SA +   R +  D    Y+ +   
Sbjct: 286 RAVVRYDRDGDQHYDV-------------------TSAFIKSVRGSDVDAALHYLARMIE 326

Query: 310 IQRTPR--GRLLMPIAWQHLGIDIP 332
               PR   R ++ +A + +G+  P
Sbjct: 327 GGEDPRFIARRIVILASEDIGMADP 351


>gi|260903841|ref|ZP_05912163.1| recombination factor protein RarA [Brevibacterium linens BL2]
          Length = 499

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 77/343 (22%), Positives = 122/343 (35%), Gaps = 32/343 (9%)

Query: 16  DADISLLRPRTLEEFTGQVEA---CSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           D     +RPRT+ E  GQ       S L   +EA+         V+  GPPG+GKTTLA 
Sbjct: 34  DPLAVRMRPRTIAEVVGQDHLTFPGSPLVQLVEASGGDRAGASSVILWGPPGVGKTTLAH 93

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEIL 125
           V++   G  F   S  + A   D+  ++ N        +   VLF+DEIHR S   ++ L
Sbjct: 94  VISHAPGRTFVELSA-ITAGVKDVRQVIENARRERDMYQRTTVLFLDEIHRFSKAQQDAL 152

Query: 126 YPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR--LN 181
            PA+E+  + L+    E PS   +   LSR  L+            L DR  +  R    
Sbjct: 153 LPAVENRLVVLVAATTENPSFSVISPLLSRSLLLTLRPLDDAAIADLLDRAVVSERGLAG 212

Query: 182 FYEIEDLKT---------IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
            +E+E               +R   +   A    AA     ++               D 
Sbjct: 213 QFELEPAAKDFIVRIAGADARRSLTILEAAAGIAAAQAQFAKATAGDSTDADADAEDEDE 272

Query: 233 AEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEP 292
            +       + +    A+L                   + R    G    + +SA +   
Sbjct: 273 GDAEVDSEDSSDSEPRAILITEAACAEASS------ETVLRYDKNGDQHYDVVSAFIKSI 326

Query: 293 RDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           R +  D    Y+ +       PR   R ++  A + +G+  P 
Sbjct: 327 RGSDVDAALHYLARMIVAGEDPRFIARRVVISAAEDIGMADPQ 369


>gi|298207712|ref|YP_003715891.1| putative ATPase, AAA family protein [Croceibacter atlanticus
           HTCC2559]
 gi|83850349|gb|EAP88217.1| putative ATPase, AAA family protein [Croceibacter atlanticus
           HTCC2559]
          Length = 425

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 69/333 (20%), Positives = 117/333 (35%), Gaps = 60/333 (18%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP++L+ +  Q           +  KA    L  ++F GPPG+GKTTLA ++A 
Sbjct: 4   PLAERLRPKSLDSYISQKHLVGQDGSLSKQIKA--GVLPSLIFWGPPGVGKTTLANIIAN 61

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD--------VLFIDEIHRLSIIVEEILYPA 128
           E    F S S  + +   D+  ++   +  D        +LFIDEIHR S   ++ L  A
Sbjct: 62  ESDRPFYSLSA-INSGVKDVREVIEKAKKSDGLFSSKNPLLFIDEIHRFSKSQQDSLLGA 120

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           +E   + L+    E PS   +   LSR  +                          +  E
Sbjct: 121 VEKGWVTLIGATTENPSFEVIPALLSRCQVYVLK---------------------PFSKE 159

Query: 187 DLKTIVQRGAKLTG-LAVTDEAACEIAMRSRGTPRIAGRLLR----RVRDFAEVAHAKTI 241
           DL  ++ +       ++  +    E     R +   A +LL      V   A      T 
Sbjct: 160 DLLQLINKAIIEDPYISKKNIELKETEALLRLSGGDARKLLNIFELLVNTSASEKVVITN 219

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
              + +     +  DK G    D+                   ISA +   R +  +   
Sbjct: 220 DFVLKNVQQNTVLYDKTGEQHYDI-------------------ISAFIKSIRGSDPNAAV 260

Query: 302 PYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
            ++ +        +   R L+ +A + +G   P
Sbjct: 261 YWLARMVEGGEDVKFIARRLIILASEDIGNANP 293


>gi|289167408|ref|YP_003445677.1| chromosome segregation helicase, ATPase, AAA family [Streptococcus
           mitis B6]
 gi|288906975|emb|CBJ21809.1| chromosome segregation helicase, ATPase, AAA family [Streptococcus
           mitis B6]
          Length = 423

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 68/326 (20%), Positives = 118/326 (36%), Gaps = 42/326 (12%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            D     +RP+T+++  GQ       K+     +A    L  ++  GPPG+GKT++A  +
Sbjct: 2   PDNLALRMRPKTIDQVIGQEHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           A      FR+ +  V +K      A         VL +DEIHRL    ++ L P +E   
Sbjct: 60  AGTTKYAFRTFNATVDSKKRLQEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGL 119

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + ++    E P         SR  +            PL ++                  
Sbjct: 120 VIMIGATTENPFFSVTPAIRSRVQIFEL--------EPLSNQDVKEALQIALSNP----- 166

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI--TREIADAA 249
            +RG     + + ++A   IA  + G  R A   L                 T +I + +
Sbjct: 167 -ERGFD-FPVELDEDALDFIATSTNGDLRSAFNSLDLAVLSTPENDESIRHITLDIMENS 224

Query: 250 LLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           L R    +DK G    D+  L+ + ++  G  V              ++       +I+ 
Sbjct: 225 LQRSYITMDKDGDGHYDV--LSALQKSIRGSDVDA------------SLHYAAR--LIEA 268

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
           G +      R L  IA++ +G+  P 
Sbjct: 269 GDLP--SLARRLTVIAYEDIGLANPE 292


>gi|257866969|ref|ZP_05646622.1| AAA ATPase [Enterococcus casseliflavus EC30]
 gi|257873303|ref|ZP_05652956.1| AAA ATPase [Enterococcus casseliflavus EC10]
 gi|257801025|gb|EEV29955.1| AAA ATPase [Enterococcus casseliflavus EC30]
 gi|257807467|gb|EEV36289.1| AAA ATPase [Enterococcus casseliflavus EC10]
          Length = 425

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 73/321 (22%), Positives = 123/321 (38%), Gaps = 37/321 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RPR L+E  GQ       K+     +A+   L  ++  GPPG GKT++A  +A 
Sbjct: 4   PLAYRMRPRNLDEVVGQQHLVGPGKIIRRMVEAK--MLSSMILYGPPGTGKTSIASAIAG 61

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR  +     K    + A    +    +L +DE+HRL    ++ L P +E  ++ 
Sbjct: 62  STRYAFRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEVHRLDKTKQDFLLPHLESGKI- 120

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           +M+G       + IN +    I + T++  +  PLQ+   +         E       RG
Sbjct: 121 IMIGATTENPYITINPA----IRSRTQIFEV-KPLQEEDILTAIDQALADE------TRG 169

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI--TREIADAALLRL 253
                + +TD+A   ++  + G  R A   L              I  T EI +  + R 
Sbjct: 170 LGSETIVLTDDARLHLSRATNGDLRSALNGLELAARSTPKGPDGIIHLTLEIIEECVQRK 229

Query: 254 A--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
           A   DK G    D      +   F          S   S+   A+  L    +++ G + 
Sbjct: 230 ALTHDKDGDAHYD------VISAFQK--------SIRGSDVDGALHYLGR--LVEAGDLA 273

Query: 312 RTPRGRLLMPIAWQHLGIDIP 332
                R LM I ++ +G+  P
Sbjct: 274 IIC--RRLMVIGYEDIGLANP 292


>gi|226306471|ref|YP_002766431.1| ATPase [Rhodococcus erythropolis PR4]
 gi|226185588|dbj|BAH33692.1| putative ATPase [Rhodococcus erythropolis PR4]
          Length = 479

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 80/337 (23%), Positives = 121/337 (35%), Gaps = 40/337 (11%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           E  LS  V         +RP TL E  GQ              +    A   VL  GPPG
Sbjct: 43  ERALSS-VPPGAPLAVRMRPLTLGEVVGQQHLLGPGAPLRRMVEGSGAA--SVLLYGPPG 99

Query: 65  LGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GKTTLA +++   G  F + S        +    +LA       ++ VLFIDE+HR S 
Sbjct: 100 TGKTTLASLISGATGRRFEALSALSAGVKEVRGVIELARRRLLNGEQTVLFIDEVHRFSK 159

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             ++ L  A+E+  + L+    E PS   V   LSR  ++   +        L +R    
Sbjct: 160 TQQDALLAAVENRIVLLVGATTENPSFSVVSALLSRSLVLQLQSLTAADVQELLERAVTD 219

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                          +RG     +A+ D+A   +   + G  R A   L      A    
Sbjct: 220 ---------------ERGFGG-AIAIDDDAMEHLVRLAAGDARRALTALEAAAGAALDTA 263

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
             +    + D A +  ++DK               R    G    + ISA +   R +  
Sbjct: 264 GDSSGPVVLDLATVEASVDKAA------------VRYDRAGDQHYDVISAFIKSIRGSDV 311

Query: 298 DLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           D    Y+ +       PR   R L+  A + +G+  P
Sbjct: 312 DAALHYLARMLTAGEDPRFIARRLVVHASEDIGMADP 348


>gi|290581325|ref|YP_003485717.1| putative ATPase [Streptococcus mutans NN2025]
 gi|254998224|dbj|BAH88825.1| putative ATPase [Streptococcus mutans NN2025]
          Length = 421

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 70/320 (21%), Positives = 118/320 (36%), Gaps = 42/320 (13%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            +RPR + E  GQ       K+      A    L  ++  GPPG+GKT++A  +A     
Sbjct: 8   RMRPRDISEVIGQKHLVGQGKIISRMVTA--NRLSSMILYGPPGIGKTSIASAIAGTTKF 65

Query: 81  NFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137
            FR+ +     K      A         VL +DEIHRL    ++ L P +E+ Q+ ++  
Sbjct: 66  AFRTFNATTDTKKRLQEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGQIIMIGA 125

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
             E P         SR  +            PL +             +   T  +RG  
Sbjct: 126 TTENPFFSVTPAIRSRVQIFEL--------EPLSNEDIKKAM------QVALTDTERGFD 171

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE--VAHAKTITREIADAALLRLA- 254
              + + D+A   IA  + G  R A   L       +     ++ IT +  + +L R   
Sbjct: 172 -FEVKLDDDALDFIAQATNGDLRSAYNSLDLAIMSTQPDDNGSRHITLDTVENSLQRSYI 230

Query: 255 -IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +DK G    D+  L+ + ++  G  V              ++       +I+ G +   
Sbjct: 231 TMDKDGDGHYDV--LSALQKSIRGSDV------------NASLHYAAR--LIEAGDLP-- 272

Query: 314 PRGRLLMPIAWQHLGIDIPH 333
              R L  IA++ +G+  P 
Sbjct: 273 SLARRLTIIAYEDIGLANPD 292


>gi|320011904|gb|ADW06754.1| AAA ATPase central domain protein [Streptomyces flavogriseus ATCC
           33331]
          Length = 457

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 84/360 (23%), Positives = 131/360 (36%), Gaps = 72/360 (20%)

Query: 2   MDREGLLSRNVSQEDADIS------LLRPRTLEEFTGQVEAC---SNLKVFIEAAKARAE 52
           M+ +   +    +++ D S       +RPRTL+E  GQ       S L+  +        
Sbjct: 1   MEPDLFTAAAEDRQEKDPSSSPLAVRMRPRTLDEVVGQQHLLKPGSPLRRLVGEGGGGPA 60

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------ED 105
               V+  GPPG GKTTLA VV++     F   S  + A   ++ A++            
Sbjct: 61  GPSSVILWGPPGTGKTTLAYVVSKATNKRFVELSA-ITAGVKEVRAVIEGARRATGGFGK 119

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRV 163
             VLF+DEIHR S   ++ L PA+E+  + L+    E P    +            +  +
Sbjct: 120 ETVLFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYFSII--------SPLLSRSL 171

Query: 164 GLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAG 223
            L   PL D             +DL+ +++R   +T       A            RIAG
Sbjct: 172 LLTLEPLGD-------------DDLRALLRRA--VTDERGLAGAVTLPEDAEAHLLRIAG 216

Query: 224 RLLRRVRDFAEV-------AHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARN 274
              RRV    E         H   IT E  +  + R A   D+ G    D+   + + ++
Sbjct: 217 GDARRVLTALEAAAGAALSKHEDEITLETLEETVDRAAVKYDRDGDQHYDVA--SALIKS 274

Query: 275 FGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
             G  V                 D    Y+ +       PR   R LM  A + +G+  P
Sbjct: 275 IRGSDV-----------------DAALHYLARMIEAGEDPRFIARRLMISASEDIGLADP 317


>gi|227552635|ref|ZP_03982684.1| crossover junction endodeoxyribonuclease [Enterococcus faecium
           TX1330]
 gi|227178261|gb|EEI59233.1| crossover junction endodeoxyribonuclease [Enterococcus faecium
           TX1330]
          Length = 459

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 67/330 (20%), Positives = 115/330 (34%), Gaps = 41/330 (12%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
                +      +RPRT++E  GQ       K+      AR   L  ++  GPPG GKT+
Sbjct: 28  EENPMQQPLAYRMRPRTIDEVVGQQHLVGEGKIIRRMVDAR--MLSSMILYGPPGTGKTS 85

Query: 70  LAQVVARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           +A  +A      FR  +    +K    + A    +    +L +DE+HRL    ++ L P 
Sbjct: 86  IASAIAGSTNYAFRMLNAATDSKKELQVVAEEAKMSGTVILLLDEVHRLDKTKQDFLLPH 145

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           +E  ++ L+    E P         SR  +            PL +      +     ++
Sbjct: 146 LESGRIILIGATTENPYITINPAIRSRTQIFEV--------KPLTE------QDIQLAVK 191

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI--TRE 244
                 +RG     + + +EA   ++  + G  R A   L              I  T  
Sbjct: 192 HALKDKERGLGQQAIQLDEEALLHLSRATNGDLRSALNGLELAARSTPPDKEGKIHLTLS 251

Query: 245 IADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           I +  + R A   DK G    D      +   F     G +  +A               
Sbjct: 252 IIEECVQRKALTHDKNGDAHYD------VISAFQKSIRGSDVDAALH----------YLA 295

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
            +++ G +      R LM I ++ +G+  P
Sbjct: 296 RLVEAGDLASIC--RRLMVIGYEDIGLGNP 323


>gi|119962942|ref|YP_948025.1| recombination factor protein RarA [Arthrobacter aurescens TC1]
 gi|119949801|gb|ABM08712.1| putative ATPase, AAA family [Arthrobacter aurescens TC1]
          Length = 497

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 80/357 (22%), Positives = 124/357 (34%), Gaps = 58/357 (16%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIE----AAKARAEALDHVLFVGPPGLGK 67
            SQ       +RPR+L+E  GQ           +    A  A       V+  GPPG GK
Sbjct: 31  ASQRSPLAVRMRPRSLDEVVGQQHLLGQGSPLRQLAAGADAAGPAGPSSVILWGPPGTGK 90

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSII 120
           TTLA V+AR  G  F   S  + A   D+  ++          +   VLF+DEIHR +  
Sbjct: 91  TTLAHVIARGPGRKFVELSA-ITAGVKDVRRVMDEALTARDLYKKTTVLFLDEIHRFNKA 149

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++ L P +E+  + L+    E PS   V            +  + L   PL D      
Sbjct: 150 QQDALLPGVENRWVVLVAATTENPSFSVV--------SPLLSRSLLLTLKPLTD------ 195

Query: 179 RLNFYEIEDLKTIVQRG---AKLT--GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                  +D+  ++QR    A+     + ++ EA   +   S G  R A   L      A
Sbjct: 196 -------DDISGLLQRAVVDARGLAGRVELSPEALDHLVRLSGGDARRALTALEAAAGVA 248

Query: 234 -------EVAHAKTITREIADAALLRLAIDKMG---------FDQLDLRYLTMIARNFGG 277
                  +V    T   E  + A     +   G             +        R    
Sbjct: 249 FGDSTAVDVPDTATGPEEEGETADAEPGLANDGPPDAPVMVELRHTERALDAAAVRYDRA 308

Query: 278 GPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           G    +  SA +   R +  D    Y+ +       PR   R ++  A + +G+  P
Sbjct: 309 GDQHYDVASAFIKSIRGSDVDAALHYLARMLEAGEDPRFVARRIVISAAEDIGMADP 365


>gi|213405279|ref|XP_002173411.1| DNA-dependent ATPase MGS1 [Schizosaccharomyces japonicus yFS275]
 gi|212001458|gb|EEB07118.1| DNA-dependent ATPase MGS1 [Schizosaccharomyces japonicus yFS275]
          Length = 514

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 64/328 (19%), Positives = 114/328 (34%), Gaps = 63/328 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+TL+++ GQ        + I     R E    ++  G  G+GKTTLA+++A+
Sbjct: 88  PLAERVRPKTLDDYVGQESLVGKGGI-IRNLIERDEC-PSMILWGNSGVGKTTLARIIAK 145

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTN-------LEDRDVLFIDEIHRLSIIVEEILYPAM 129
             G +F   S    A   D   +             + ++F+DE+HR +   ++I  P +
Sbjct: 146 TTGAHFLEVSA-TSASVSDCRKIFEESQNLLRLTGKKTIVFLDEVHRFNRAQQDIFLPMV 204

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           E   + L     PS R     LSR +                         N  + +++ 
Sbjct: 205 EKGLITL----NPSFRLNSALLSRCS---------------------VFTFNVLDKDNVL 239

Query: 190 TIVQRGAKLT------GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           +I++R  ++        L + +     I+    G  R+A   L       E   + ++  
Sbjct: 240 SILRRAMQIESERKERKLELDESILQHISAICDGDARVALNCLEIALGMLE-GGSVSLPD 298

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
                A      D  G    D                   TISA     R +  D    Y
Sbjct: 299 LKKKFARSFSVYDSTGDAHYD-------------------TISAFHKSIRGSDVDAALYY 339

Query: 304 MIQQGFIQRTPR--GRLLMPIAWQHLGI 329
           + +       P    R ++ IA + +G+
Sbjct: 340 LCRMLESGEDPLYVARRMVRIASEDVGL 367


>gi|296170787|ref|ZP_06852359.1| AAA family ATPase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295894602|gb|EFG74339.1| AAA family ATPase [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 451

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 80/329 (24%), Positives = 133/329 (40%), Gaps = 61/329 (18%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            +RP +L+E  GQ    +         +    A   V+  GPPG GKTTLA ++++    
Sbjct: 34  RMRPASLDEVVGQEHLLAPGSPLRRLVEGSGMA--SVILYGPPGSGKTTLAALISQATAR 91

Query: 81  NFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
            F + S  + A   D+ A++          ++ VLFIDE+HR S   ++ L  A+E+  +
Sbjct: 92  RFEALSA-LSAGVKDVRAVIDVARRALLNGEQTVLFIDEVHRFSKTQQDALLSAVENRVV 150

Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            L+    E PS   V   LSR                      + ++L   + +D++ +V
Sbjct: 151 LLVAATTENPSFSVVAPLLSR---------------------SLILQLRPLDADDIRAVV 189

Query: 193 QRGAKL-----TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           +R           +AVT EA   +   + G  R A   L  V   +  A A+++T E  +
Sbjct: 190 RRAIDDPRGLGGRVAVTPEAVDLLVRLAAGDARRALTALE-VASESAQAAAESVTVETIE 248

Query: 248 AALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
            +L + A   D+ G    D+                   ISA +   R +  D    Y+ 
Sbjct: 249 QSLDKAAVRYDRDGDQHYDV-------------------ISAFIKSVRGSDVDAALHYLA 289

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           +       PR   R LM +A + +G+  P
Sbjct: 290 RMLVAGEDPRFVARRLMILASEDIGMADP 318


>gi|71904346|ref|YP_281149.1| recombination factor protein RarA [Streptococcus pyogenes MGAS6180]
 gi|139474470|ref|YP_001129186.1| recombination factor protein RarA [Streptococcus pyogenes str.
           Manfredo]
 gi|306826574|ref|ZP_07459881.1| AAA family ATPase [Streptococcus pyogenes ATCC 10782]
 gi|71803441|gb|AAX72794.1| ATPase, AAA family [Streptococcus pyogenes MGAS6180]
 gi|134272717|emb|CAM30989.1| putative ATPase [Streptococcus pyogenes str. Manfredo]
 gi|304431212|gb|EFM34214.1| AAA family ATPase [Streptococcus pyogenes ATCC 10782]
          Length = 422

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 68/326 (20%), Positives = 118/326 (36%), Gaps = 42/326 (12%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            D     +RP+T+ E  GQ       K+     +A    L  ++  GPPG+GKT++A  +
Sbjct: 2   PDHLALRMRPKTISEVIGQKHLVGEGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           A      FR+ +  + +K      A         VL +DEIHRL    ++ L P +E+  
Sbjct: 60  AGTTRYAFRTFNATIDSKKRLQEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGT 119

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + ++    E P         SR  +            PL +            I+   + 
Sbjct: 120 IIMIGATTENPFFSVTPAIRSRVQIFEL--------EPLSNEDIKTA------IQLAISD 165

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT--REIADAA 249
            +RG     + + DEA   I   + G  R A   L             +     E  + +
Sbjct: 166 KERGFPFL-VTIDDEALDFIVTATNGDLRSAYNSLDLAVMSTSPNEDSSRHISLETMENS 224

Query: 250 LLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           L R    +DK G    D+  L+ + ++  G  V              ++       +++ 
Sbjct: 225 LQRSYITMDKNGDGHYDV--LSALQKSIRGSDV------------NASLHYAAR--LVEA 268

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
           G +      R L  IA++ +G+  P 
Sbjct: 269 GDLP--SLARRLTIIAYEDIGLANPD 292


>gi|225861597|ref|YP_002743106.1| recombination factor protein RarA [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298255511|ref|ZP_06979097.1| recombination factor protein RarA [Streptococcus pneumoniae str.
           Canada MDR_19A]
 gi|298503523|ref|YP_003725463.1| crossover junction endodeoxyribonuclease [Streptococcus pneumoniae
           TCH8431/19A]
 gi|225728091|gb|ACO23942.1| ATPase, AAA family [Streptococcus pneumoniae Taiwan19F-14]
 gi|298239118|gb|ADI70249.1| crossover junction endodeoxyribonuclease [Streptococcus pneumoniae
           TCH8431/19A]
 gi|327389962|gb|EGE88307.1| AAA ATPase, central region [Streptococcus pneumoniae GA04375]
          Length = 423

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 68/327 (20%), Positives = 120/327 (36%), Gaps = 44/327 (13%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            D     +RP+T+++  GQ       K+     +A    L  ++  GPPG+GKT++A  +
Sbjct: 2   PDNLALRMRPKTIDQVIGQEHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           A      FR+ +  V +K   L  +    +     VL +DEIHRL    ++ L P +E  
Sbjct: 60  AGTTKYAFRTFNATVDSKKR-LQEISEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESG 118

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
            + ++    E P         SR  +            PL ++                 
Sbjct: 119 LVIMIGATTENPFFSVTPAIRSRVQIFEL--------EPLSNQDVKEALQIALSNP---- 166

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI--TREIADA 248
             +RG     + + ++A   IA  + G  R A   L                 T +I + 
Sbjct: 167 --ERGFD-FPIELDEDALDFIATSTNGDLRSAFNSLDLAVLSTPENDEGIRHITLDIMEN 223

Query: 249 ALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           +L R    +DK G    D+  L+ + ++  G  V              ++       +I+
Sbjct: 224 SLQRSYITMDKDGDGHYDV--LSALQKSIRGSDVDA------------SLHYAAR--LIE 267

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            G +      R L  IA++ +G+  P 
Sbjct: 268 AGDLP--SLARRLTVIAYEDIGLANPE 292


>gi|169833738|ref|YP_001695164.1| recombination factor protein RarA [Streptococcus pneumoniae
           Hungary19A-6]
 gi|168996240|gb|ACA36852.1| chromosome segregation helicase [Streptococcus pneumoniae
           Hungary19A-6]
          Length = 423

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 68/327 (20%), Positives = 120/327 (36%), Gaps = 44/327 (13%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            D     +RP+T+++  GQ       K+     +A    L  ++  GPPG+GKT++A  +
Sbjct: 2   PDNLALRMRPKTIDQVIGQEHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           A      FR+ +  V +K   L  +    +     VL +DEIHRL    ++ L P +E  
Sbjct: 60  AGTTKYAFRTFNATVDSKKR-LQEISEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESG 118

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
            + ++    E P         SR  +            PL ++                 
Sbjct: 119 LVIMIGATTENPFFSVTPAIRSRVQIFEL--------EPLSNQDVKEALQIALSNP---- 166

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI--TREIADA 248
             +RG     + + ++A   IA  + G  R A   L                 T +I + 
Sbjct: 167 --ERGFN-FPIELDEDALDFIATSTNGDLRSAFNSLDLAVLSTPENDEGIRHITLDIMEN 223

Query: 249 ALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           +L R    +DK G    D+  L+ + ++  G  V              ++       +I+
Sbjct: 224 SLQRSYITMDKDGDGHYDV--LSALQKSIRGSDVDA------------SLHYAAR--LIE 267

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            G +      R L  IA++ +G+  P 
Sbjct: 268 AGDLP--SLARRLTVIAYEDIGLANPE 292


>gi|168486363|ref|ZP_02710871.1| ATPase, AAA family [Streptococcus pneumoniae CDC1087-00]
 gi|183570586|gb|EDT91114.1| ATPase, AAA family [Streptococcus pneumoniae CDC1087-00]
          Length = 423

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 68/327 (20%), Positives = 120/327 (36%), Gaps = 44/327 (13%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            D     +RP+T+++  GQ       K+     +A    L  ++  GPPG+GKT++A  +
Sbjct: 2   PDNLALRMRPKTIDQVIGQEHLVGPGKIIRRMVEA--NCLSSMILYGPPGIGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           A      FR+ +  V +K   L  +    +     VL +DEIHRL    ++ L P +E  
Sbjct: 60  AGTTKYAFRTFNATVDSKKR-LQEISEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESG 118

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
            + ++    E P         SR  +            PL ++                 
Sbjct: 119 LVIMIGATTENPFFSVTPAIRSRVQIFEL--------EPLSNQDVKEALQIALSNP---- 166

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI--TREIADA 248
             +RG     + + ++A   IA  + G  R A   L                 T +I + 
Sbjct: 167 --ERGFD-FPIELDEDALDFIATSTNGDLRSAFNSLDLAVLSTPENDEGIRHITLDIMEN 223

Query: 249 ALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           +L R    +DK G    D+  L+ + ++  G  V              ++       +I+
Sbjct: 224 SLQRSYITMDKDGDGHYDV--LSALQKSIRGSDVDA------------SLHYTAR--LIE 267

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            G +      R L  IA++ +G+  P 
Sbjct: 268 AGDLP--SLARRLTVIAYEDIGLANPE 292


>gi|161507285|ref|YP_001577239.1| recombination factor protein RarA [Lactobacillus helveticus DPC
           4571]
 gi|160348274|gb|ABX26948.1| Chromosomal segregation helicase [Lactobacillus helveticus DPC
           4571]
          Length = 437

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 66/329 (20%), Positives = 112/329 (34%), Gaps = 47/329 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+ L++  GQ       K+     +AR   L  ++  GPPG+GKT++A  +A 
Sbjct: 3   PLAYRMRPQNLDQVVGQQHLIGPGKIIRRMVEAR--LLSSMILYGPPGIGKTSIASAIAG 60

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR  +     K      A    +    +L +DEIHRL    ++ L P +E  Q+ 
Sbjct: 61  STKYAFRKLNAATDGKKQLQQVAAEGKMSGTVILLLDEIHRLDKTKQDFLLPLLESGQII 120

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           L+    E P         SR  +           +   DR                T  +
Sbjct: 121 LIGATTENPYISISPAIRSRCQIFELKPLSAQDASSAIDR--------------ALTDKE 166

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV--------RDFAEVAHAKTITREI 245
            G     + +TD+A   +  +  G  R     L           +D  +   +  IT++ 
Sbjct: 167 NGLGNYPVELTDDARSLLIEKGNGDLRSTLNSLELAVLSTKQELKDNHQDTDSIVITQQE 226

Query: 246 ADAALLR--LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
              ++       D  G    D      +   F     G +T +A                
Sbjct: 227 MADSIQMKVQNFDSSGDGHYD------LVSAFQKSIRGSDTDAALH----------YLAK 270

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           +I+ G +      R L  IA++ +G+  P
Sbjct: 271 LIESGDLISIC--RRLSVIAYEDIGLANP 297


>gi|325836748|ref|ZP_08166215.1| ATPase, AAA family [Turicibacter sp. HGF1]
 gi|325491126|gb|EGC93415.1| ATPase, AAA family [Turicibacter sp. HGF1]
          Length = 421

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 67/333 (20%), Positives = 117/333 (35%), Gaps = 58/333 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
               L+RPRTL+E  GQ       ++  +        + +++F GP G GKTT+A ++A 
Sbjct: 4   PLADLIRPRTLDEVVGQQHLIGEGQILRKLIAVNH--IPNLIFYGPSGTGKTTIANIIAS 61

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE-----DRDVLFIDEIHRLSIIVEEILYPAMED 131
                    +    AK  D+  ++++L      +   L++DEI   +   ++ L   +E 
Sbjct: 62  LSNKKIYKLNA-TDAKTEDIKQIISSLNTLEGMNGIFLYLDEIQNFNKKQQQTLLKYIET 120

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
            Q+ L+    E P        LSR T++   +                        E++ 
Sbjct: 121 GQITLITSTTENPYFTIFSAILSRSTILEFKS---------------------LTPEEIV 159

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
             ++R  +L                      +A   LRR  +  E+A       E     
Sbjct: 160 DGLKRAVELVESEFYLYPLTVEEEALNYIANVANGDLRRALNALEIALYPNCRTEGFVLN 219

Query: 250 LLRLA---------IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           L              D+ G    D   L+   ++  G            S+P  AI  L 
Sbjct: 220 LEVARECTVTAGFSYDRFGDQHYDT--LSAFQKSIRG------------SDPDAAIHYLA 265

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
              +I+ G +  T   R L+ IA + +G+  P 
Sbjct: 266 R--LIKAGDL--TSICRRLLVIAAEDIGLAYPQ 294


>gi|304570584|ref|YP_388490.2| recombination factor protein RarA [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 428

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 79/320 (24%), Positives = 122/320 (38%), Gaps = 59/320 (18%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
             +RP  LE F GQ      L+  + A++     L  +LF GPPG GK+T+A ++AR  G
Sbjct: 30  EKIRPADLEGFVGQTHLRDRLRALMNASR-----LPSLLFFGPPGCGKSTIALLLARNTG 84

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137
             +   S P       L  L  +L    +L +DE+HR S   ++   P +E  ++ L+  
Sbjct: 85  QKYIRISAPEAG----LQQLRKSLAGVRILVLDELHRFSKAQQDFFLPVLESGEVTLLAS 140

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
             E PS    +  LSR  ++                             DL T+ +RGA+
Sbjct: 141 TTENPSFSVTRQLLSRMHVLRLKPLAHS---------------------DLLTLARRGAE 179

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL--LRLAI 255
             G A+ D+    +A  + G  R    L+  V    E    +  T E   AAL  L +  
Sbjct: 180 AQGAALKDDVCEMLATVAHGDARTLLNLVEYVAGLPE----EKQTPEAVKAALPELVMRH 235

Query: 256 DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR 315
           DK G    ++                    SA +   R +  D    Y+         PR
Sbjct: 236 DKDGDSHYEIA-------------------SALIKSIRGSDPDAALYYLACLLEGGEDPR 276

Query: 316 --GRLLMPIAWQHLGIDIPH 333
              R L+  A + +G+  P 
Sbjct: 277 FICRRLILSASEDIGLADPQ 296


>gi|15903658|ref|NP_359208.1| recombination factor protein RarA [Streptococcus pneumoniae R6]
 gi|116516731|ref|YP_817033.1| recombination factor protein RarA [Streptococcus pneumoniae D39]
 gi|149002087|ref|ZP_01827041.1| ATPase, AAA family protein [Streptococcus pneumoniae SP14-BS69]
 gi|221232531|ref|YP_002511684.1| ATPase [Streptococcus pneumoniae ATCC 700669]
 gi|15459285|gb|AAL00419.1| Chromosome segregation helicase [Streptococcus pneumoniae R6]
 gi|116077307|gb|ABJ55027.1| ATPase, AAA family protein [Streptococcus pneumoniae D39]
 gi|147759896|gb|EDK66886.1| ATPase, AAA family protein [Streptococcus pneumoniae SP14-BS69]
 gi|220674992|emb|CAR69569.1| putative ATPase [Streptococcus pneumoniae ATCC 700669]
 gi|332074143|gb|EGI84621.1| AAA ATPase, central region [Streptococcus pneumoniae GA41301]
 gi|332201201|gb|EGJ15272.1| AAA ATPase, central region [Streptococcus pneumoniae GA47901]
          Length = 423

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 68/327 (20%), Positives = 120/327 (36%), Gaps = 44/327 (13%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            D     +RP+T+++  GQ       K+     +A    L  ++  GPPG+GKT++A  +
Sbjct: 2   PDNLALRMRPKTIDQVIGQEHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           A      FR+ +  V +K   L  +    +     VL +DEIHRL    ++ L P +E  
Sbjct: 60  AGTTKYAFRTFNATVDSKKR-LQEISEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESG 118

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
            + ++    E P         SR  +            PL ++                 
Sbjct: 119 LVIMIGATTENPFFSVTPAIRSRVQIFEL--------EPLSNQDVKEALQIALSNP---- 166

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI--TREIADA 248
             +RG     + + ++A   IA  + G  R A   L                 T +I + 
Sbjct: 167 --ERGFD-FPIELDEDALDFIATSTNGDLRSAFNSLDLAVLSTPENDEGIRHITLDIMEN 223

Query: 249 ALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           +L R    +DK G    D+  L+ + ++  G  V              ++       +I+
Sbjct: 224 SLQRSYITMDKDGDGHYDV--LSALQKSIRGSDVDA------------SLHYAAR--LIE 267

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            G +      R L  IA++ +G+  P 
Sbjct: 268 AGDLP--SLARRLTVIAYEDIGLANPE 292


>gi|293571361|ref|ZP_06682392.1| ATPase, AAA family [Enterococcus faecium E980]
 gi|291608577|gb|EFF37868.1| ATPase, AAA family [Enterococcus faecium E980]
          Length = 427

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 66/321 (20%), Positives = 120/321 (37%), Gaps = 37/321 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RPRT++E  GQ       K+      AR   L  ++  GPPG GKT++A  +A 
Sbjct: 4   PLAYRMRPRTIDEVVGQQHLVGEGKIIRRMVDAR--MLSSMILYGPPGTGKTSIASAIAG 61

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR  +    +K    + A    +    +L +DE+HRL    ++ L P +E  ++ 
Sbjct: 62  STNYAFRMLNAATDSKKDLQVVAEEAKMSGTVILLLDEVHRLDKTKQDFLLPHLESGRI- 120

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           +++G       + IN +    I + T++  +   ++    +        +E      +RG
Sbjct: 121 ILIGATTENPYITINPA----IRSRTQIFEVKPLIEQDIQLA-------VEHALKDKERG 169

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI--TREIADAALLRL 253
                + + +EA   ++  + G  R A   L              I  T  I +  + R 
Sbjct: 170 LSQQAIQLDEEALLHLSRATNGDLRSALNGLELAARSTPPDKEGKIHLTLSIIEECVQRK 229

Query: 254 A--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
           A   DK G    D      +   F     G +  +A                +++ G + 
Sbjct: 230 ALTHDKNGDAHYD------VISAFQKSIRGSDVDAALH----------YLARLVEAGDLA 273

Query: 312 RTPRGRLLMPIAWQHLGIDIP 332
                R LM I ++ +G+  P
Sbjct: 274 SIC--RRLMVIGYEDIGLGNP 292


>gi|325693863|gb|EGD35782.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
           SK150]
 gi|327468709|gb|EGF14188.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
           SK330]
          Length = 422

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 65/326 (19%), Positives = 118/326 (36%), Gaps = 42/326 (12%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            +     +RP  +++  GQ       K+     +A    L  ++  GPPG+GKT++A  +
Sbjct: 2   PENLALRMRPTDIDQIIGQQHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           A      FR+ +  V +K      A         VL +DEIHRL    ++ L P +E   
Sbjct: 60  AGTTKFAFRTFNATVDSKKRLQEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGL 119

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + ++    E P         SR  +            PL +             +     
Sbjct: 120 VIMIGATTENPFFSVTPAIRSRVQIFEL--------EPLSNDDIRTAIQLALTDK----- 166

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI--TREIADAA 249
            +RG     + + DEA   IA+ + G  R A   L                 T ++ + +
Sbjct: 167 -ERGFD-FPVELDDEALDFIAISTNGDLRSAYNSLDLAVLSTPENGKGIRHITLDVMENS 224

Query: 250 LLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           L +    +DK G    D+  L+ + ++  G  V              ++       +++ 
Sbjct: 225 LQKSYITMDKDGDGHYDV--LSALQKSIRGSDV------------NASLHYAAR--LVEA 268

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
           G +      R L  IA++ +G+  P+
Sbjct: 269 GDLP--SLARRLTVIAYEDIGLANPN 292


>gi|327472989|gb|EGF18416.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
           SK408]
          Length = 422

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 67/326 (20%), Positives = 121/326 (37%), Gaps = 42/326 (12%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            +     +RP  +++  GQ       K+     +A    L  ++  GPPG+GKT++A  +
Sbjct: 2   PENLALRMRPTDIDQIIGQQHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           A      FR+ +  V +K      A         VL +DEIHRL    ++ L P +E   
Sbjct: 60  AGTTKFAFRTFNATVDSKKRLQEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGL 119

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + ++    E P         SR  +            PL +             +     
Sbjct: 120 VIMIGATTENPFFSVTPAIRSRVQIFEL--------EPLSNEDIRTAIQLTLTDK----- 166

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA--EVAHAKTITREIADAA 249
            +RG     + + DEA   IA+ + G  R A   L         +    + IT ++ + +
Sbjct: 167 -ERGFN-FPVELDDEALDFIAISTNGDLRSAYNSLDLAVLSTPEDDKGIRHITLDVMENS 224

Query: 250 LLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           L +    +DK G    D+  L+ + ++  G  V              ++       +I+ 
Sbjct: 225 LQKSYITMDKDGDGHYDV--LSALQKSIRGSDV------------NASLHYAAR--LIEA 268

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
           G +      R L  IA++ +G+  P+
Sbjct: 269 GDLP--SLARRLTVIAYEDIGLANPN 292


>gi|148984220|ref|ZP_01817515.1| ATPase, AAA family protein [Streptococcus pneumoniae SP3-BS71]
 gi|149006551|ref|ZP_01830250.1| ATPase, AAA family protein [Streptococcus pneumoniae SP18-BS74]
 gi|307127992|ref|YP_003880023.1| ATPase, AAA family [Streptococcus pneumoniae 670-6B]
 gi|147761849|gb|EDK68812.1| ATPase, AAA family protein [Streptococcus pneumoniae SP18-BS74]
 gi|147923509|gb|EDK74622.1| ATPase, AAA family protein [Streptococcus pneumoniae SP3-BS71]
 gi|301800575|emb|CBW33215.1| putative ATPase [Streptococcus pneumoniae OXC141]
 gi|306485054|gb|ADM91923.1| ATPase, AAA family [Streptococcus pneumoniae 670-6B]
 gi|332072951|gb|EGI83432.1| AAA ATPase, central region [Streptococcus pneumoniae GA17545]
          Length = 423

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 68/327 (20%), Positives = 120/327 (36%), Gaps = 44/327 (13%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            D     +RP+T+++  GQ       K+     +A    L  ++  GPPG+GKT++A  +
Sbjct: 2   PDNLALRMRPKTIDQVIGQEHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           A      FR+ +  V +K   L  +    +     VL +DEIHRL    ++ L P +E  
Sbjct: 60  AGTTKYAFRTFNATVDSKKR-LQEISEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESG 118

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
            + ++    E P         SR  +            PL ++                 
Sbjct: 119 LVIMIGATTENPFFSVTPAIRSRVQIFEL--------EPLSNQDVKEALQIALSNP---- 166

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI--TREIADA 248
             +RG     + + ++A   IA  + G  R A   L                 T +I + 
Sbjct: 167 --ERGFD-FPIELDEDALDFIATSTNGDLRSAFNSLDLAVLSTPENDEGIRHITLDIMEN 223

Query: 249 ALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           +L R    +DK G    D+  L+ + ++  G  V              ++       +I+
Sbjct: 224 SLQRSYITMDKDGDGHYDV--LSALQKSIRGSDVDA------------SLHYTAR--LIE 267

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            G +      R L  IA++ +G+  P 
Sbjct: 268 AGDLP--SLARRLTVIAYEDIGLANPE 292


>gi|329944922|ref|ZP_08292949.1| recombination factor protein RarA [Actinomyces sp. oral taxon 170
           str. F0386]
 gi|328529733|gb|EGF56629.1| recombination factor protein RarA [Actinomyces sp. oral taxon 170
           str. F0386]
          Length = 476

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 68/327 (20%), Positives = 116/327 (35%), Gaps = 51/327 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRPR L++  GQ +  +            +  L  ++  GPPG GKTT+A+++A 
Sbjct: 57  PLADRLRPRALDDVVGQDQLLAPGAPLGRMV--ASGRLSSIVLWGPPGCGKTTVARLLAD 114

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
             G+ F   S        + K    AA    +    +LF+DEIHR +   ++   P +ED
Sbjct: 115 RTGLVFEQVSATFSGVADLRKVFAAAARRREIGQGTLLFVDEIHRFNRAQQDSFLPYVED 174

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             + L+    E PS       LSR  ++       +    L  R               +
Sbjct: 175 GTVVLVGATTENPSFELNGALLSRCQVMVLRRLDEVALTELLAR--------------AE 220

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
           ++  R   L     T+EA   +   + G  R    ++ +V         +++  E   A 
Sbjct: 221 SLTGRSLAL-----TEEARTALLSMADGDGRYLLGMVEQVLAAQGAGGPESLDIEGLHAV 275

Query: 250 LLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           +   A   DK   +  +L                   ISA     R +  D    ++ + 
Sbjct: 276 VASRAPLYDKSREEHYNL-------------------ISALHKSMRGSDPDAALYWLARM 316

Query: 308 GFIQRTPR--GRLLMPIAWQHLGIDIP 332
                 P    R L+  A + +G+  P
Sbjct: 317 LGGGEDPLYVARRLVRFASEDVGMADP 343


>gi|239939946|ref|ZP_04691883.1| recombination factor protein RarA [Streptomyces roseosporus NRRL
           15998]
 gi|239986430|ref|ZP_04707094.1| recombination factor protein RarA [Streptomyces roseosporus NRRL
           11379]
 gi|291443377|ref|ZP_06582767.1| recombination factor protein RarA [Streptomyces roseosporus NRRL
           15998]
 gi|291346324|gb|EFE73228.1| recombination factor protein RarA [Streptomyces roseosporus NRRL
           15998]
          Length = 455

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 79/352 (22%), Positives = 126/352 (35%), Gaps = 57/352 (16%)

Query: 2   MDREGLLSRNVSQEDADIS------LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEA-- 53
           M+ +   +    +++ D S       +RPRTL+E  GQ                      
Sbjct: 1   MEPDLFTAAAEDRQEKDPSSSPLAVRMRPRTLDEVVGQQHLLKPGSPLRRLVGDGGGPAG 60

Query: 54  LDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDR 106
              V+  GPPG GKTTLA VV++     F   S  + A   ++ A++ +           
Sbjct: 61  ASSVILWGPPGTGKTTLAYVVSKATNKRFVELSA-ITAGVKEVRAVIESARRATGGFGKE 119

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVG 164
            VLF+DEIHR S   ++ L PA+E+  + L+    E P    +            +  + 
Sbjct: 120 TVLFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYFSIISP--------LLSRSLL 171

Query: 165 LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGR 224
           L   PL D     +       E       RG     + + ++A   +   + G  R A  
Sbjct: 172 LTLEPLTDDDLRSLLRRALTEE-------RGLGG-AVTLPEDAEAHLLRIAGGDARRALT 223

Query: 225 LLRRVRDFAEVAHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGI 282
            L      A   H   IT E  +A + R A   D+ G    D+   + + ++  G  V  
Sbjct: 224 ALEAAAGAAIATHEAEITLETVEATVDRAAVKYDRDGDQHYDVA--SALIKSIRGSDV-- 279

Query: 283 ETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
                          D    Y+ +       PR   R LM  A + +G+  P
Sbjct: 280 ---------------DAALHYLARMIEAGEDPRFIARRLMISASEDIGLADP 316


>gi|189485323|ref|YP_001956264.1| hypothetical protein TGRD_320 [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|170287282|dbj|BAG13803.1| conserved hypothetical protein [uncultured Termite group 1
           bacterium phylotype Rs-D17]
          Length = 439

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 69/347 (19%), Positives = 128/347 (36%), Gaps = 52/347 (14%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M +   L    ++++  ++  + P + EEFTGQ     + K+   + +A  + L  V+F 
Sbjct: 1   MKQTNFLENAANRKNKPLAARMAPSSFEEFTGQDNIVGDGKLLRRSIEA--DNLGSVIFF 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDE 113
           GPPG GK+ LA+++A +    F   +    + A D+  ++   E        + +L +DE
Sbjct: 59  GPPGTGKSALARIIALKTKAYFEEVNAVTTSTA-DIRKIIAAAEARTEMSGRKTILMLDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IH  +   ++ L   +E   + L  +  E P        +SR T+    +          
Sbjct: 118 IHHFNRSQQDALLLDVEKGIITLIGITTENPFFYINAAIISRSTVFEFQSLSKKAL---- 173

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
                      Y +E      + G     + +++EA   + + + G  R     L     
Sbjct: 174 ----------LYVMESALKDKENGLGSYKVKMSEEAREHLLVNACGDARKLLNALEIGVL 223

Query: 232 FAEVAHAKTITREI--ADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISA 287
            AEV        +I  A  ++ + A   D+ G    D                    ISA
Sbjct: 224 SAEVDGEGIRIFDIRAAQESMQKRAVLYDRSGDAHYDH-------------------ISA 264

Query: 288 GLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
            +   R    D    +M +       PR   R ++  A + +G+  P
Sbjct: 265 FIKSMRGTDPDAAVYWMAKMLAAGEDPRFIARRIIICASEDVGMADP 311


>gi|314933792|ref|ZP_07841157.1| ATPase, AAA family [Staphylococcus caprae C87]
 gi|313653942|gb|EFS17699.1| ATPase, AAA family [Staphylococcus caprae C87]
          Length = 422

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 68/324 (20%), Positives = 126/324 (38%), Gaps = 42/324 (12%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +   S +RP  ++E   Q     +  +     + +   L  ++F GPPG+GKT++A+ ++
Sbjct: 4   EPLASRMRPMNIDEIISQQHLVGSKGIIRRMVETK--RLSSMIFYGPPGIGKTSIAKAIS 61

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
                 FR  +  V     D+  ++   +   + +L +DEIHRL    ++ L P +E+ +
Sbjct: 62  GSTQFKFRQLNA-VTNTKKDMQMVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGK 120

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + L+      P         SR  +            PL D            ++     
Sbjct: 121 IVLIGATTSNPYHAINPAIRSRAQIFELY--------PLDD------HDVRIALDRAIED 166

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE-VAHAKTITREIADAAL 250
             RG K     V ++     + +S+G  R A   L      AE V + + IT + A   L
Sbjct: 167 SDRGLKSYHPNVDEDGMEYFSTQSQGDVRSALNALELAVLSAEVVENQRHITLDDAKDCL 226

Query: 251 LRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            + A   DK G    D+  ++   ++  G  V              A+  L    +I+ G
Sbjct: 227 QKGAFVSDKDGDMHYDV--MSAFQKSIRGSDV------------NAALHYLAR--LIEAG 270

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIP 332
            +      R L+ I+++ +G+  P
Sbjct: 271 DLPTIV--RRLLVISYEDVGLASP 292


>gi|307326777|ref|ZP_07605969.1| AAA ATPase central domain protein [Streptomyces violaceusniger Tu
           4113]
 gi|306887540|gb|EFN18534.1| AAA ATPase central domain protein [Streptomyces violaceusniger Tu
           4113]
          Length = 462

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 83/358 (23%), Positives = 130/358 (36%), Gaps = 68/358 (18%)

Query: 2   MDREGLLSRNVSQEDADIS------LLRPRTLEEFTGQVEAC---SNLKVFIEAAKARAE 52
           M+ +   +    +++ D +       +RPRTL+E  GQ       S L+  +        
Sbjct: 1   MEPDLFTAAAEDRQEKDPASSPLAVRMRPRTLDEVVGQQHLLRPGSPLRRLVGEGGGGPA 60

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR------ 106
               V+  GPPG+GKTTLA VV++     F   S  + A   ++ A++            
Sbjct: 61  GPSSVILWGPPGIGKTTLAYVVSQATQKRFVELSA-ITAGVKEVRAVIDGARRSSGAYGR 119

Query: 107 -DVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAAT--- 160
             VLF+DEIHR S   ++ L PA+E+  + L+    E P    +   LSR  L+      
Sbjct: 120 DTVLFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYFSVISPLLSRSLLLTLESLT 179

Query: 161 --TRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGT 218
                GLL   L D  G+   +     ED +  + R A                    G 
Sbjct: 180 DDDLRGLLRRALTDERGLGGAVTL--PEDAEAHLLRIAG-------------------GD 218

Query: 219 PRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFG 276
            R A   L      A       +T    + A+ R A   D+ G    D+   + + ++  
Sbjct: 219 ARRALTALEAGAGAALDKGEAEVTLTSLEEAVDRAAVKYDRAGDQHYDVA--SALIKSIR 276

Query: 277 GGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           G  V                 D    Y+ +       PR   R LM  A + +G+  P
Sbjct: 277 GSDV-----------------DAALHYLARMIEAGEDPRFIARRLMISASEDIGLADP 317


>gi|19746896|ref|NP_608032.1| recombination factor protein RarA [Streptococcus pyogenes MGAS8232]
 gi|94995187|ref|YP_603285.1| recombination factor protein RarA [Streptococcus pyogenes
           MGAS10750]
 gi|19749141|gb|AAL98531.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232]
 gi|94548695|gb|ABF38741.1| ATPase, AAA family [Streptococcus pyogenes MGAS10750]
          Length = 422

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 68/326 (20%), Positives = 118/326 (36%), Gaps = 42/326 (12%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            D     +RP+T+ E  GQ       K+     +A    L  ++  GPPG+GKT++A  +
Sbjct: 2   PDHLALRMRPKTISEVIGQKHLVGEGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           A      FR+ +  + +K      A         VL +DEIHRL    ++ L P +E+  
Sbjct: 60  AGTTRYAFRTFNATIDSKKRLQEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGT 119

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + ++    E P         SR  +            PL +            I+   + 
Sbjct: 120 IIMIGATTENPFFSVTPAIRSRVQIFEL--------EPLSNEDIKTA------IQLAISD 165

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT--REIADAA 249
            +RG     + + DEA   I   + G  R A   L             +     E  + +
Sbjct: 166 KERGFPFL-VTIDDEALDFIVTATNGDLRSAYNSLDLAVMSTSPNEDSSRHISLETMENS 224

Query: 250 LLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           L R    +DK G    D+  L+ + ++  G  V              ++       +++ 
Sbjct: 225 LQRSYITMDKNGDGHYDV--LSALQKSIRGSDV------------NASLHYAAR--LVEA 268

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
           G +      R L  IA++ +G+  P 
Sbjct: 269 GDLP--SLARRLTIIAYEDIGLANPD 292


>gi|329117114|ref|ZP_08245831.1| ATPase, AAA family [Streptococcus parauberis NCFD 2020]
 gi|326907519|gb|EGE54433.1| ATPase, AAA family [Streptococcus parauberis NCFD 2020]
          Length = 423

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 66/326 (20%), Positives = 115/326 (35%), Gaps = 42/326 (12%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            D     LRPRT+ E  GQ       K+      A    L  ++  GPPG+GKT++A  +
Sbjct: 2   PDNLALRLRPRTISEVIGQKHLVGEGKIIRRMVDA--NMLSSMILFGPPGIGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           A      FR+ +  V  K      A         VL +DEIHRL    ++ L P +E+  
Sbjct: 60  AGTTKYAFRTFNATVDTKKRLQEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGN 119

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + ++    E P         SR  +                            ++   + 
Sbjct: 120 IIMIGATTENPFFSVTPAIRSRVQIFELEPLSNQDVKE--------------AVQAAISD 165

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI--TREIADAA 249
            +RG +   + + ++A   I   + G  R A   L             +   T +  + +
Sbjct: 166 HERGFE-FEVKLDEDALDFITTATNGDLRSAYNSLDLAIMSTHPNKDGSRHVTLDTVENS 224

Query: 250 LLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           L R    +DK G    D+  L+ + ++  G  V              ++       +++ 
Sbjct: 225 LQRSYITMDKNGDGHYDV--LSALQKSIRGSDV------------NASLHYAAR--LVEA 268

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
           G +      R L  IA++ +G+  P 
Sbjct: 269 GDLP--SLARRLTVIAYEDIGLANPE 292


>gi|332200340|gb|EGJ14413.1| AAA ATPase, central region [Streptococcus pneumoniae GA47368]
          Length = 423

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 68/327 (20%), Positives = 120/327 (36%), Gaps = 44/327 (13%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            D     +RP+T+++  GQ       K+     +A    L  ++  GPPG+GKT++A  +
Sbjct: 2   PDNLALRMRPKTIDQVIGQEHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           A      FR+ +  V +K   L  +    +     VL +DEIHRL    ++ L P +E  
Sbjct: 60  AGTTKYAFRTFNATVDSKKR-LQEISEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESG 118

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
            + ++    E P         SR  +            PL ++                 
Sbjct: 119 LVIMIGATTENPFFSVTPAIRSRVQIFEL--------EPLSNQDVKEALQIALSNP---- 166

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI--TREIADA 248
             +RG     + + ++A   IA  + G  R A   L                 T +I + 
Sbjct: 167 --ERGFD-FPIELDEDALDFIATSTNGDLRSAFNSLDLAVLSTPENDEGIRHITLDIMEN 223

Query: 249 ALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           +L R    +DK G    D+  L+ + ++  G  V              ++       +I+
Sbjct: 224 SLQRSYITMDKDGDGHYDV--LSALQKSIRGSDVDA------------SLHYAAR--LIE 267

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            G +      R L  IA++ +G+  P 
Sbjct: 268 AGDLP--SLARRLTVIAYEDIGLANPE 292


>gi|303232661|ref|ZP_07319346.1| recombination factor protein RarA [Atopobium vaginae PB189-T1-4]
 gi|302481147|gb|EFL44222.1| recombination factor protein RarA [Atopobium vaginae PB189-T1-4]
          Length = 471

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 71/363 (19%), Positives = 128/363 (35%), Gaps = 56/363 (15%)

Query: 1   MMDREGLLSRNVSQEDADIS---------LLRPRTLEEFTGQVEACSNLKVFIEAAKARA 51
           + D     S N +  +A             +RPR L+E++GQ +A         A +   
Sbjct: 4   LFDLNSSTSANDTPLEAPARADMAAPLAVRMRPRNLDEYSGQTQAVGEHSWLRRAIE--H 61

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------E 104
           + +  ++  GP G GKTTLA ++AR    +  + S  + A   D+   ++          
Sbjct: 62  DTVTSIILYGPSGTGKTTLAHIIARYTHAHVVTMSA-ISATVKDVRDTISTASSRLYTRR 120

Query: 105 DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATT- 161
            R +LF+DEIHR +   ++ L  A+E   + L+    E P        +SR  +I  T+ 
Sbjct: 121 QRTILFLDEIHRFNRSQQDALLEAVEMRTIILIGATTENPYFEVNSALISRSRIIELTSL 180

Query: 162 ----RVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK-----LTGLAVTDEAACEIA 212
                  ++   L D  G+         E  + +VQ         L  L +  + A    
Sbjct: 181 SDDDIAKVINRALTDERGLNNCFTL-TREAKQKLVQLSCGDARFALCTLELASQMATPPE 239

Query: 213 MRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIA 272
             +   P+++  +     D      A  + +      L     DK      D+       
Sbjct: 240 HIALSIPQLSEYIAHTRADEPFCIDATCVEQANPHVGLP---YDKNQDMHYDV------- 289

Query: 273 RNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP--RGRLLMPIAWQHLGID 330
                       ISA +   R +  D +  ++ +       P    R ++  A + +G  
Sbjct: 290 ------------ISAFIKSMRGSDPDAVLYWLARMIDAGEDPIFIARRILICASEDIGNA 337

Query: 331 IPH 333
            P 
Sbjct: 338 DPQ 340


>gi|303254696|ref|ZP_07340798.1| recombination factor protein RarA [Streptococcus pneumoniae BS455]
 gi|303258731|ref|ZP_07344711.1| recombination factor protein RarA [Streptococcus pneumoniae
           SP-BS293]
 gi|303261895|ref|ZP_07347841.1| recombination factor protein RarA [Streptococcus pneumoniae
           SP14-BS292]
 gi|303263757|ref|ZP_07349679.1| recombination factor protein RarA [Streptococcus pneumoniae BS397]
 gi|303265708|ref|ZP_07351607.1| recombination factor protein RarA [Streptococcus pneumoniae BS457]
 gi|303268589|ref|ZP_07354381.1| recombination factor protein RarA [Streptococcus pneumoniae BS458]
 gi|301802487|emb|CBW35245.1| putative ATPase [Streptococcus pneumoniae INV200]
 gi|302598408|gb|EFL65452.1| recombination factor protein RarA [Streptococcus pneumoniae BS455]
 gi|302636978|gb|EFL67467.1| recombination factor protein RarA [Streptococcus pneumoniae
           SP14-BS292]
 gi|302640232|gb|EFL70687.1| recombination factor protein RarA [Streptococcus pneumoniae
           SP-BS293]
 gi|302641868|gb|EFL72223.1| recombination factor protein RarA [Streptococcus pneumoniae BS458]
 gi|302644835|gb|EFL75083.1| recombination factor protein RarA [Streptococcus pneumoniae BS457]
 gi|302646795|gb|EFL77020.1| recombination factor protein RarA [Streptococcus pneumoniae BS397]
          Length = 423

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 68/327 (20%), Positives = 120/327 (36%), Gaps = 44/327 (13%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            D     +RP+T+++  GQ       K+     +A    L  ++  GPPG+GKT++A  +
Sbjct: 2   PDNLALRMRPKTIDQVIGQEHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           A      FR+ +  V +K   L  +    +     VL +DEIHRL    ++ L P +E  
Sbjct: 60  AGTTKYAFRTFNATVDSKKR-LQEISEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESG 118

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
            + ++    E P         SR  +            PL ++                 
Sbjct: 119 LVIMIGATTENPFFSVTPAIRSRVQIFEL--------EPLSNQDVKEALQIALSNP---- 166

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI--TREIADA 248
             +RG     + + ++A   IA  + G  R A   L                 T +I + 
Sbjct: 167 --ERGFD-FPIELDEDALDFIATSTNGDLRSAFNSLDLAVLSTPENDKGIRHITLDIMEN 223

Query: 249 ALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           +L R    +DK G    D+  L+ + ++  G  V              ++       +I+
Sbjct: 224 SLQRSYITMDKDGDGHYDV--LSALQKSIRGSDVDA------------SLHYAAR--LIE 267

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            G +      R L  IA++ +G+  P 
Sbjct: 268 AGDLP--SLARRLTVIAYEDIGLANPE 292


>gi|301300882|ref|ZP_07207054.1| recombination factor protein RarA [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300851481|gb|EFK79193.1| recombination factor protein RarA [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 423

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 65/319 (20%), Positives = 125/319 (39%), Gaps = 37/319 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+ +++  GQ       K+     +A+   L  ++  GPPG GKT++A  +A 
Sbjct: 3   PLAYRMRPKNIDDVVGQQHLVGPGKIIRRMVEAK--LLSSMILYGPPGTGKTSIASAIAG 60

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR  +    +K   +            +L +DEIHRL+   ++ L P +ED  + 
Sbjct: 61  STKYAFRKMNAATDSKKKLEQVVEEAKFSGTVILLLDEIHRLTKPKQDFLLPHLEDGHI- 119

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           +++G       + IN +    I + T++  +    +D     I     + +D       G
Sbjct: 120 ILIGATTENPYISINPA----IRSRTQIFEVHPLNEDDIIQAINRAITDKDD-------G 168

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK--TITREIADAALLRL 253
                L + D+A  ++A+ + G  R     L                +T EI +  + R 
Sbjct: 169 LGELPLQINDDAMHQLAIATHGDLRSTLNTLELAAKSTPKNSEGNIVLTLEIIEECMQRK 228

Query: 254 A--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
           A   DK G    ++  ++ + ++  G  V              A+  L    +I+   + 
Sbjct: 229 ALVQDKDGDTHYNV--ISALQKSIRGSDVDA------------ALHYLAR--LIEAEDLP 272

Query: 312 RTPRGRLLMPIAWQHLGID 330
              R RL+  IA++ +G+ 
Sbjct: 273 SISR-RLIT-IAYEDIGLA 289


>gi|302773279|ref|XP_002970057.1| hypothetical protein SELMODRAFT_231444 [Selaginella moellendorffii]
 gi|300162568|gb|EFJ29181.1| hypothetical protein SELMODRAFT_231444 [Selaginella moellendorffii]
          Length = 411

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 70/333 (21%), Positives = 120/333 (36%), Gaps = 54/333 (16%)

Query: 22  LRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP ++    GQ         LK  +E      ++L  V+F GPPG GKTTLA+ +A  +
Sbjct: 1   MRPTSVNAILGQDHLLGPRGILKSLLE-----GDSLASVIFWGPPGTGKTTLARAIASTV 55

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
              F + S  V +   ++  +L   +       R +LF+DE+HR +   ++   P +E  
Sbjct: 56  SYRFVALSA-VTSGVKEVREVLEEAKKAKKYGQRTLLFLDEVHRFNKAQQDAFLPYVEAG 114

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR------FGIPIRLNFYE 184
            +  +    E PS       LSR  ++     +      L  R       G+ +      
Sbjct: 115 HVVFVGATTENPSFEINAALLSRCKVLTMNKLLPEHLEKLIKRAVLDKEKGVIVSAGISS 174

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            E L+  V+  A    +     AA   A  +  T  IA  +L              +T  
Sbjct: 175 PEMLR--VEDDA----VVFLAAAADGDARAALNTLEIA--VLAASSSKKIDKSVMVVTLA 226

Query: 245 IADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
               AL R     DK G +  +   ++ + ++  GG                   D    
Sbjct: 227 DVKDALQRSHVFYDKTGEEHYN--IISALHKSMRGGDA-----------------DASIY 267

Query: 303 YMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           ++ +       P    R L+  A + +G+  P 
Sbjct: 268 WLARMLEGGEGPLYVARRLVRFASEDVGLADPQ 300


>gi|50915051|ref|YP_061023.1| recombination factor protein RarA [Streptococcus pyogenes
           MGAS10394]
 gi|50904125|gb|AAT87840.1| ATPase, AAA family [Streptococcus pyogenes MGAS10394]
          Length = 422

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 69/327 (21%), Positives = 123/327 (37%), Gaps = 44/327 (13%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            D     +RP+T+ E  GQ       K+     +A    L  ++  GPPG+GKT++A  +
Sbjct: 2   PDHLALRMRPKTISEVIGQKHLVGEGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           A      FR+ +  + +K   L  +    +     VL +DEIHRL    ++ L P +E+ 
Sbjct: 60  AGTTRYAFRTFNATIDSKKR-LQEITEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENG 118

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
            + ++    E P         SR  +            PL +            I+   +
Sbjct: 119 TIIMIGATTENPFFSVTPAIRSRVQIFEL--------EPLSNEDIKTA------IQLAIS 164

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA--EVAHAKTITREIADA 248
             +RG     + + DEA   I   + G  R A   L         +    + IT +  + 
Sbjct: 165 DKERGFPFL-VTIDDEALDFIVTATNGDLRSAYNSLDLAVMSTKPDSDGKRHITLDTVEN 223

Query: 249 ALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           +L R    +DK G    D+  L+ + ++  G  V              ++       +++
Sbjct: 224 SLQRSYITMDKDGDGHYDV--LSALQKSIRGSDV------------NASLHYAAR--LVE 267

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            G +      R L  IA++ +G+  P 
Sbjct: 268 AGDLP--SLARRLTIIAYEDIGLANPD 292


>gi|209560132|ref|YP_002286604.1| recombination factor protein RarA [Streptococcus pyogenes NZ131]
 gi|209541333|gb|ACI61909.1| ATPase, AAA family [Streptococcus pyogenes NZ131]
          Length = 422

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 68/326 (20%), Positives = 118/326 (36%), Gaps = 42/326 (12%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            D     +RP+T+ E  GQ       K+     +A    L  ++  GPPG+GKT++A  +
Sbjct: 2   PDHLALRMRPKTISEVIGQKHLVGEGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           A      FR+ +  + +K      A         VL +DEIHRL    ++ L P +E+  
Sbjct: 60  AGTTRYAFRTFNATIDSKKRLQEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGT 119

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + ++    E P         SR  +            PL +            I+   + 
Sbjct: 120 IIMIGATTENPFFSVTPAIRSRVQIFEL--------EPLSNEDIKTA------IQLAISD 165

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT--REIADAA 249
            +RG     + + DEA   I   + G  R A   L             +     E  + +
Sbjct: 166 KERGFPFL-VTIDDEALDFIVTTTNGDLRSAYNSLDLAVMSTSPNEDSSRHISLETMENS 224

Query: 250 LLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           L R    +DK G    D+  L+ + ++  G  V              ++       +++ 
Sbjct: 225 LQRSYITMDKNGDGHYDV--LSALQKSIRGSDV------------NASLHYAAR--LVEA 268

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
           G +      R L  IA++ +G+  P 
Sbjct: 269 GDLP--SLARRLTIIAYEDIGLANPD 292


>gi|260682883|ref|YP_003214168.1| recombination factor protein RarA [Clostridium difficile CD196]
 gi|260686481|ref|YP_003217614.1| recombination factor protein RarA [Clostridium difficile R20291]
 gi|260209046|emb|CBA62163.1| putative ATPase [Clostridium difficile CD196]
 gi|260212497|emb|CBE03422.1| putative ATPase [Clostridium difficile R20291]
          Length = 431

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 68/332 (20%), Positives = 126/332 (37%), Gaps = 47/332 (14%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           S++      +RP+T+ +  GQ     N K+   +   ++  L +++F GPPG+GKTT+A+
Sbjct: 8   SEKMPLADKIRPKTMNDVIGQSHIIGNGKIL--SKILQSNFLPNMIFFGPPGVGKTTVAE 65

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLE-----DRDVLFIDEIHRLSIIVEEILYP 127
           ++A E             +   D+  +++ L      +  +L+IDEI   +   ++ +  
Sbjct: 66  IIA-ERSNKSFYKINATNSSLEDIKKVISELGSINNVNGVLLYIDEIQSFNKKQQQSILE 124

Query: 128 AMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
            ME+  + L+    E P     K  LSR T+        L       R    +  + Y  
Sbjct: 125 FMENGSITLIASTTENPYHYVYKALLSRSTVFEFKPLEKLDIEKGLKRAVEVLNEDSY-- 182

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
                          +   + A  +IA+ S G  R A  +L  V    +         + 
Sbjct: 183 -------------MDIECNNNAIEDIAILSDGDMRRALNILEVVVYSTKPNKDNITYIDS 229

Query: 246 A----DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
                      +  DK G    D   L+   ++  G            S+P+ +I  L  
Sbjct: 230 DVIRASTFNKIINYDKNGDSHYD--ILSAFQKSIRG------------SDPQASIHYLAR 275

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
             +I+ G +      R L+ IA + +G+  P+
Sbjct: 276 --LIKGGDLISIC--RRLLVIASEDIGLAYPN 303


>gi|15901619|ref|NP_346223.1| recombination factor protein RarA [Streptococcus pneumoniae TIGR4]
 gi|111656850|ref|ZP_01407692.1| hypothetical protein SpneT_02001892 [Streptococcus pneumoniae
           TIGR4]
 gi|149011349|ref|ZP_01832596.1| ATPase, AAA family protein [Streptococcus pneumoniae SP19-BS75]
 gi|225855223|ref|YP_002736735.1| recombination factor protein RarA [Streptococcus pneumoniae JJA]
 gi|14973288|gb|AAK75863.1| ATPase, AAA family [Streptococcus pneumoniae TIGR4]
 gi|147764339|gb|EDK71270.1| ATPase, AAA family protein [Streptococcus pneumoniae SP19-BS75]
 gi|225724070|gb|ACO19923.1| ATPase, AAA family [Streptococcus pneumoniae JJA]
          Length = 423

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 68/327 (20%), Positives = 120/327 (36%), Gaps = 44/327 (13%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            D     +RP+T+++  GQ       K+     +A    L  ++  GPPG+GKT++A  +
Sbjct: 2   PDNLALRMRPKTIDQVIGQEHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           A      FR+ +  V +K   L  +    +     VL +DEIHRL    ++ L P +E  
Sbjct: 60  AGTTKYAFRTFNATVDSKKR-LQEISEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESG 118

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
            + ++    E P         SR  +            PL ++                 
Sbjct: 119 LVIMIGATTENPFFSVTPAIRSRVQIFEL--------EPLSNQDVKEALQIALSNP---- 166

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI--TREIADA 248
             +RG     + + ++A   IA  + G  R A   L                 T +I + 
Sbjct: 167 --ERGFD-FPIELDEDALDFIATSTNGDLRSAFNSLDLAVLSTPENDEGIRHITLDIMEN 223

Query: 249 ALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           +L R    +DK G    D+  L+ + ++  G  V              ++       +I+
Sbjct: 224 SLQRSYITMDKDGDGHYDV--LSALQKSIRGSDVDA------------SLHYTAR--LIE 267

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            G +      R L  IA++ +G+  P 
Sbjct: 268 AGDLP--SLARRLTVIAYEDIGLANPE 292


>gi|262377125|ref|ZP_06070350.1| recombination factor protein RarA [Acinetobacter lwoffii SH145]
 gi|262307863|gb|EEY89001.1| recombination factor protein RarA [Acinetobacter lwoffii SH145]
          Length = 424

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 75/327 (22%), Positives = 119/327 (36%), Gaps = 57/327 (17%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
             LRPR L +  GQ           +        L  ++F GPPG+GKTT+A ++A+ + 
Sbjct: 10  ERLRPRDLTQIIGQEHLLGEQAPLRQMIDQGH--LPSIIFWGPPGVGKTTIALLLAQAVD 67

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
             F S S  +     +L  ++    D    V+FIDEIHR +   ++ L  A+E  ++ L+
Sbjct: 68  RPFISLSA-LNTGVKELREIIAEGGDLLTPVVFIDEIHRFNKSQQDALLNAVEKGKITLI 126

Query: 138 --VGEGPSARSVKINLSRFTL-----IAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
               E PS       LSR  +     ++A +   LLT  LQ+   +  R     IE+   
Sbjct: 127 GATTENPSFEVNSALLSRCQVYSLNALSAESIQTLLTQALQNDSFLQERHIL--IEEFDA 184

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           ++Q  A                       R A  LL  +    E      IT  +     
Sbjct: 185 LIQFAAG--------------------DARKALNLLDLIASTFEADMENIITNAVVVKVA 224

Query: 251 LRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            +     DK G    DL                   +SA +   R +  D    +M +  
Sbjct: 225 QQNIARYDKSGEQHYDL-------------------VSAFIKSIRGSDPDAALYWMARML 265

Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIPH 333
                P    R ++  A + +G   P+
Sbjct: 266 KGGEDPVFIARRMLIAASEDIGNSNPN 292


>gi|255318063|ref|ZP_05359308.1| ATPase, AAA family [Acinetobacter radioresistens SK82]
 gi|255304886|gb|EET84058.1| ATPase, AAA family [Acinetobacter radioresistens SK82]
          Length = 423

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 71/325 (21%), Positives = 112/325 (34%), Gaps = 53/325 (16%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
             LRPR L E  GQ           +        L  ++F GPPG+GKTT+A ++A+ + 
Sbjct: 10  ERLRPRDLSEIIGQDHLLGEQAPLRQMIDQGH--LPSIIFWGPPGVGKTTIALLLAQAVD 67

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
             F S S  +     +L  ++    D    V+FIDEIHR +   ++ L  A+E  ++ L+
Sbjct: 68  RPFISLSA-LNTGVKELREIIAESGDLLTPVVFIDEIHRFNKSQQDALLNAVEKGKITLI 126

Query: 138 --VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP---IRLNFYEIEDLKTIV 192
               E PS       LSR  +             L D+       ++    +IE+   ++
Sbjct: 127 GATTENPSFEVNGALLSRCQVYTLNILDSESIQTLLDKALQTDEFLKERHIQIEEYDALI 186

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           Q  A                       R A  LL  +    E      I   I      +
Sbjct: 187 QFAAG--------------------DARKALNLLDLIASTFEPGLENIINNAIVVKVAQQ 226

Query: 253 L--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
                DK G    DL                   +SA +   R +  D    +M +    
Sbjct: 227 NIARYDKSGEQHYDL-------------------VSAFIKSIRGSDPDATLYWMARMLKG 267

Query: 311 QRTPR--GRLLMPIAWQHLGIDIPH 333
              P    R ++  A + +G   P+
Sbjct: 268 GEDPVFIARRMLIAASEDIGNSNPN 292


>gi|163786201|ref|ZP_02180649.1| ATPase, AAA family protein [Flavobacteriales bacterium ALC-1]
 gi|159878061|gb|EDP72117.1| ATPase, AAA family protein [Flavobacteriales bacterium ALC-1]
          Length = 425

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 67/328 (20%), Positives = 115/328 (35%), Gaps = 50/328 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP+ L ++  Q        +  +  K  +  +  ++  GPPG+GKTTLA ++A 
Sbjct: 4   PLAERLRPKILNDYLSQQHLVGKDGMLYQQIK--SGVIPSLILWGPPGIGKTTLANIIAN 61

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE--------DRDVLFIDEIHRLSIIVEEILYPA 128
           E    F   S  + +   D+  ++   +           +LFIDEIHR S   ++ L  A
Sbjct: 62  ESERPFFKLSA-INSGVKDIREVIDKAKKSGGLFTAKNPILFIDEIHRFSKSQQDSLLEA 120

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           +E   + L+    E PS   +   LSR  +             L  R           I 
Sbjct: 121 VEKGWVTLIGATTENPSFEVISALLSRCQVYTLNAFSKADLEALLQR----AIKEDDTIS 176

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
            LK  ++    L   +  D         +R    I   L+        V   + +T+++ 
Sbjct: 177 KLKIKLKETEALLRFSGGD---------ARKLLNIFELLVTSFDTEPIVITNELVTKQVQ 227

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           + A      DK G    D+                   ISA +   R +  +    Y+ +
Sbjct: 228 NKA---ARYDKTGEQHYDI-------------------ISAFIKSIRGSDPNAAVYYLAR 265

Query: 307 QGFIQRTPR--GRLLMPIAWQHLGIDIP 332
                   +   R L+ +A + +G   P
Sbjct: 266 MIEGGEDVKFIARRLLILASEDIGNANP 293


>gi|194397127|ref|YP_002038384.1| recombination factor protein RarA [Streptococcus pneumoniae G54]
 gi|225857384|ref|YP_002738895.1| recombination factor protein RarA [Streptococcus pneumoniae P1031]
 gi|194356794|gb|ACF55242.1| ATPase, AAA family [Streptococcus pneumoniae G54]
 gi|225725467|gb|ACO21319.1| ATPase, AAA family [Streptococcus pneumoniae P1031]
          Length = 423

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 68/327 (20%), Positives = 120/327 (36%), Gaps = 44/327 (13%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            D     +RP+T+++  GQ       K+     +A    L  ++  GPPG+GKT++A  +
Sbjct: 2   PDNLALRMRPKTIDQVIGQEHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           A      FR+ +  V +K   L  +    +     VL +DEIHRL    ++ L P +E  
Sbjct: 60  AGTTKYAFRTFNATVDSKKR-LQEISEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESG 118

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
            + ++    E P         SR  +            PL ++                 
Sbjct: 119 LVIMIGATTENPFFSVTPAIRSRVQIFEL--------EPLSNQDVKEALQIALSNP---- 166

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI--TREIADA 248
             +RG     + + ++A   IA  + G  R A   L                 T +I + 
Sbjct: 167 --ERGFD-FPIELDEDALDFIATSTNGDLRSAFNSLDLAVLSTPENDEGIRHITLDIMEN 223

Query: 249 ALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           +L R    +DK G    D+  L+ + ++  G  V              ++       +I+
Sbjct: 224 SLQRSYITMDKDGDGHYDV--LSALQKSIRGSDVDA------------SLHYTAR--LIE 267

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            G +      R L  IA++ +G+  P 
Sbjct: 268 AGDLP--SLARRLTVIAYEDIGLANPE 292


>gi|306824709|ref|ZP_07458053.1| AAA family ATPase [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304432920|gb|EFM35892.1| AAA family ATPase [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 429

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 70/326 (21%), Positives = 118/326 (36%), Gaps = 42/326 (12%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            D     +RP+T+++  GQ       K+     +A    L  ++  GPPG+GKT++A  +
Sbjct: 8   PDNLALRMRPKTIDQVIGQEHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAI 65

Query: 75  ARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           A      FR+ +  V +K      A         VL +DEIHRL    ++ L P +E   
Sbjct: 66  AGTTKYAFRTFNATVDSKKRLQEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESAL 125

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + ++    E P         SR  +            PL ++             D    
Sbjct: 126 VIMIGATTENPFFSVTPAIRSRVQIFEL--------EPLSNQDVKEAIQIALTNPD---- 173

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI--TREIADAA 249
             RG     + + D+A   IA  + G  R A   L                 T +I + +
Sbjct: 174 --RGFDFL-VELDDDALDFIATSTNGDLRSAFNSLDLAVLSTPENDKGIRHITLDIIENS 230

Query: 250 LLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           L R    +DK G    D+  L+ + ++  G  V              ++       +I+ 
Sbjct: 231 LQRSYITMDKDGDGHYDV--LSALQKSIRGSDVDA------------SLHYAAR--LIEA 274

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
           G +      R L  IA++ +G+  P 
Sbjct: 275 GDLP--SLARRLTVIAYEDIGLANPE 298


>gi|226366324|ref|YP_002784107.1| recombination factor protein RarA [Rhodococcus opacus B4]
 gi|226244814|dbj|BAH55162.1| putative AAA family ATPase [Rhodococcus opacus B4]
          Length = 477

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 75/321 (23%), Positives = 115/321 (35%), Gaps = 39/321 (12%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            +RPRTL E  GQ              +    A   VL  GPPG GKTTLA +++   G 
Sbjct: 47  RMRPRTLGEVVGQQHLLGPGAPLRRLVEGSGAA--SVLLYGPPGTGKTTLASLISGATGR 104

Query: 81  NFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
            F + S        +    +LA       ++ VLFIDE+HR S   ++ L  A+E+  + 
Sbjct: 105 RFEALSALSAGVKEVRGVIELARRRLLAGEQTVLFIDEVHRFSKTQQDALLAAVENRIVL 164

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           L+    E PS   V   LSR  ++   +        L +R                   +
Sbjct: 165 LVAATTENPSFSVVSPLLSRSLVLQLQSLTADDIENLLERARTD---------------E 209

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           RG     + +  +A   +   + G  R A   L      A           + D A +  
Sbjct: 210 RGLGG-DIEIAGDAMDHLVRLAAGDARRALTALEAAAGAALDQAGDADRPVLLDLATVEA 268

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
           ++DK               R    G    + ISA +   R +  D    Y+ +       
Sbjct: 269 SVDKAA------------VRYDRDGDQHYDVISAFIKSIRGSDVDAALHYLARMLTAGED 316

Query: 314 PR--GRLLMPIAWQHLGIDIP 332
           PR   R L+  A + +G+  P
Sbjct: 317 PRFIARRLVVHASEDIGMADP 337


>gi|67538894|ref|XP_663221.1| hypothetical protein AN5617.2 [Aspergillus nidulans FGSC A4]
 gi|40743520|gb|EAA62710.1| hypothetical protein AN5617.2 [Aspergillus nidulans FGSC A4]
 gi|259484914|tpe|CBF81541.1| TPA: DNA replication ATPase (Eurofung) [Aspergillus nidulans FGSC
           A4]
          Length = 528

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 70/335 (20%), Positives = 120/335 (35%), Gaps = 69/335 (20%)

Query: 17  ADISLLRPRTLEEFTGQV--EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
                +RPRTL+E  GQ        L+  IE      + +  ++  G PG GKTT+A+V+
Sbjct: 116 PLAERMRPRTLDEVCGQELVGPTGVLRGLIE-----EDRVPSMILWGGPGTGKTTIARVI 170

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYP 127
           A  +G  F   +        +   +  + +        + ++F DEIHR S   +++   
Sbjct: 171 ASMVGSRFVEINS-TSTGVAECKKIFADAKSELGLTGRKTIIFCDEIHRFSKSQQDVFLG 229

Query: 128 AMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
            +E  Q+ L+    E PS +     LSR      +                         
Sbjct: 230 PVESGQVTLIGATTENPSFKVQNALLSRCRTFTLSK---------------------LTD 268

Query: 186 EDLKTIVQRGAKLTGLAV------TDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           ED+++I+ R  K  G          DE    +A  + G  R +  LL    + ++     
Sbjct: 269 EDIRSILNRALKTEGPNYSPSALVDDELLDYLAKFADGDARTSLNLLELGMNLSKRPG-- 326

Query: 240 TITREIADAALLRL-AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
            I+++    AL +    D+ G    D                   TISA     R +  D
Sbjct: 327 -ISKDEIKRALTKTLVYDRAGDQHYD-------------------TISAFHKSIRGSDPD 366

Query: 299 LIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
               Y+ +       P    R L+ +A + +G+  
Sbjct: 367 AALYYLARMIQSGEDPLYIARRLIVVASEDIGLAD 401


>gi|333028343|ref|ZP_08456407.1| putative recombination factor protein RarA [Streptomyces sp.
           Tu6071]
 gi|332748195|gb|EGJ78636.1| putative recombination factor protein RarA [Streptomyces sp.
           Tu6071]
          Length = 451

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 77/353 (21%), Positives = 125/353 (35%), Gaps = 58/353 (16%)

Query: 2   MDREGLLSRNVSQEDADIS------LLRPRTLEEFTGQVEACS---NLKVFIEAAKARAE 52
           M+ +   +    +++ D S       +RPRTL+E  GQ         L+  +        
Sbjct: 1   MEPDLFTAAAEERQEKDPSNSPLAVRMRPRTLDEVVGQQHLLGAGSPLRRLVGEGGGGPA 60

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------ED 105
               V+  GPPG GKTTLA VV++     F   S  + A   ++  ++            
Sbjct: 61  GASSVILWGPPGTGKTTLAYVVSKATNARFVELSA-ITAGVKEVRTVIDGARRASGGYGK 119

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRV 163
             VLF+DEIHR S   ++ L PA+E+  + L+    E P    +            +  +
Sbjct: 120 DTVLFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYFSVI--------SPLLSRSL 171

Query: 164 GLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAG 223
            L   PL D     +       E       RG K   + + D+A   +   + G  R A 
Sbjct: 172 LLTLEPLTDEDIRALLHRALTDE-------RGLKG-AVTLPDDAEEHLLRVAGGDARRAL 223

Query: 224 RLLRRVRDFAEVAHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVG 281
             L      A       IT    +  + + A   D+ G    D+   + + ++  G  V 
Sbjct: 224 TALEAGAGAALAKKEPEITLRTLEETVNKAALKYDRDGDQHYDVA--SALIKSIRGSDV- 280

Query: 282 IETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
                           D    Y+ +       PR   R LM  A + +G+  P
Sbjct: 281 ----------------DAALHYLARMIEAGEDPRFIARRLMISASEDIGLADP 317


>gi|301321559|gb|ADK68949.1| helicase subunit of the Holliday junction resolvase-like ATPase
           [Gordonia sp. KTR9]
          Length = 429

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 77/335 (22%), Positives = 124/335 (37%), Gaps = 71/335 (21%)

Query: 22  LRPRTLEEFTGQVEA---CSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RP+TL++  GQ       S L+  I  + A       VL   PP  GKT+ A+++A E 
Sbjct: 1   MRPKTLDDLVGQDHLTTPGSPLQQLISGSIAA----PSVLLWAPPATGKTSTARIIA-EN 55

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR--------DVLFIDEIHRLSIIVEEILYPAME 130
             +         A   ++ + +T  +           VLFIDEIHR S   ++IL PA+E
Sbjct: 56  TESRFVELSATSAGVKEVRSAVTEAQAGLAADPPVSTVLFIDEIHRFSKAQQDILLPAVE 115

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAA-----TTRVGLLTNPLQDRFGIPIRLNFY 183
              + L+    E PS        SR  L+       T+ V +LT  +    G+       
Sbjct: 116 SGTVSLIGATTENPSFSVNPALRSRAILLRLKPLSQTSIVSILTAAVDSPRGLNS----- 170

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
                            + + D+ A  IA  S G  R A  +L      A     +++  
Sbjct: 171 ----------------SVELPDDLALLIAGLSPGDARQALTVLELAAAAARADSRRSLCA 214

Query: 244 EIAD----AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
              +    AALLR   D+ G    D+                   +SA +   R +  D 
Sbjct: 215 GDVESIAPAALLR--YDRGGDQHYDI-------------------VSALIKAMRGSDPDA 253

Query: 300 IEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
              ++ +       PR   R ++  A + +G+  P
Sbjct: 254 ALHWLARLIASGEDPRFIARRILIHASEDVGMADP 288


>gi|255591254|ref|XP_002535477.1| werner helicase interacting protein, putative [Ricinus communis]
 gi|223522990|gb|EEF26907.1| werner helicase interacting protein, putative [Ricinus communis]
          Length = 422

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 68/326 (20%), Positives = 117/326 (35%), Gaps = 42/326 (12%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            D     +RP+T+ E  GQ       K+     +A    L  ++  GPPG+GKT++A  +
Sbjct: 2   PDHLALRMRPKTISEVIGQKHLVGEGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           A      FR+ +  + +K      A         VL +DEIHRL    ++ L P +E+  
Sbjct: 60  AGTTRYAFRTFNATIDSKKRLQEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGT 119

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + ++    E P         SR  +            PL +            I+   + 
Sbjct: 120 IIMIGATTENPFFSVTPAIRSRVQIFEL--------EPLSNEDIKTA------IQLAISD 165

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT--REIADAA 249
            +RG     + + DEA   I   + G  R A   L             +     E  + +
Sbjct: 166 KERGFPFL-VTIDDEALDFIVTATNGDLRSAYNSLDLAVMSTSPNEDSSRHISLETIENS 224

Query: 250 LLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           L R    +DK G    D+  L+ + +   G  V              ++       +++ 
Sbjct: 225 LQRSYITMDKNGDGHYDV--LSALQKAIRGSDV------------NASLHYAAR--LVEA 268

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
           G +      R L  IA++ +G+  P 
Sbjct: 269 GDLP--SLARRLTIIAYEDIGLANPD 292


>gi|42518874|ref|NP_964804.1| recombination factor protein RarA [Lactobacillus johnsonii NCC 533]
 gi|41583160|gb|AAS08770.1| hypothetical protein LJ_0949 [Lactobacillus johnsonii NCC 533]
          Length = 431

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 60/322 (18%), Positives = 107/322 (33%), Gaps = 35/322 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+ L+E  GQ     N K+     +A+   L  ++  GPPG+GKT++A  +A 
Sbjct: 3   PLAYRMRPKNLDEVVGQEHLVGNKKIIRRMVEAK--LLSSMILYGPPGIGKTSIASAIAG 60

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR  +     K    + A    +    +L +DEIHRL    ++ L P +E   + 
Sbjct: 61  STKYAFRKLNAATDTKKDLQIVAEEGKMSGTVILLLDEIHRLDKTKQDFLLPLLESGNII 120

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           L+    E P         SR  +        +  +   DR                   +
Sbjct: 121 LIGATTENPYISISPAIRSRCQIFELHRLKEMDISHAIDR--------------ALKDSE 166

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
            G     + +T +A   +  +  G  R     L       +    +    ++        
Sbjct: 167 TGLGKYNVELTKDARNLLIEKGNGDLRAILNALELAVLSTKEEKQENADNKLVIDKAEMQ 226

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY---MIQQGFI 310
              +      D             G    + +SA     R +  D    Y   + + G +
Sbjct: 227 DSIQFKSQNYD-----------ANGDGHYDLLSAFQKSIRGSDTDAALYYLGNLCESGDL 275

Query: 311 QRTPRGRLLMPIAWQHLGIDIP 332
                 R L+ IA++ +G+  P
Sbjct: 276 VAIC--RRLLVIAYEDIGLANP 295


>gi|312868089|ref|ZP_07728293.1| recombination factor protein RarA [Streptococcus parasanguinis
           F0405]
 gi|311096493|gb|EFQ54733.1| recombination factor protein RarA [Streptococcus parasanguinis
           F0405]
          Length = 423

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 69/326 (21%), Positives = 119/326 (36%), Gaps = 42/326 (12%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            D     +RPRT+++  GQ       K+     +A    L  ++  GPPG+GKT++A  +
Sbjct: 2   PDNLALRMRPRTIDQVIGQQHLVGEGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           A      FR+ +  V +K      A         VL +DEIHRL    ++ L P +E   
Sbjct: 60  AGTTKYAFRTFNATVDSKKRLQEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGL 119

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + ++    E P         SR        ++  L     +     ++    + E     
Sbjct: 120 VIMIGATTENPFFSVTPAIRSRV-------QIFELEPLTTEEVKQALKTALDDPE----- 167

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI--TREIADAA 249
             RG     + + ++A   IA  + G  R A   L                 T  I + +
Sbjct: 168 --RGFD-FPVVLDEDALDFIATSTNGDLRSAFNSLDLAVLSTSENAEGIRHITLGIMENS 224

Query: 250 LLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           L R    +DK G    D+  L+ + ++  G  V              ++       +I+ 
Sbjct: 225 LQRSYITMDKDGDGHYDV--LSALQKSIRGSDVDA------------SLHYAAR--LIEA 268

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
           G +      R L  IA++ +G+  P 
Sbjct: 269 GDLP--SLARRLTVIAYEDIGLANPD 292


>gi|11493971|gb|AAG35725.1|AF208046_1 RuvB-like RUVBL1 [Mus musculus]
          Length = 445

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 62/326 (19%), Positives = 115/326 (35%), Gaps = 35/326 (10%)

Query: 30  FTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRST- 85
           + GQ  A      L+  +EA +     +  ++  GPPG GKTTLA ++A     +     
Sbjct: 19  YIGQSRAVGQETLLRSLLEANE-----IPSLILWGPPGCGKTTLAHIIANNSKKHSIRFV 73

Query: 86  -SGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
                 AK  D+  ++   +        + +LFIDEIHR +   ++   P +E   + L+
Sbjct: 74  TLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPHVECGTITLI 133

Query: 138 --VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
               E PS +     LSR  +I            +  R    + ++  +       +   
Sbjct: 134 GATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAINSLGIHVLDSSRPTDPLSHS 193

Query: 196 AKLTGLA---VTDEAACEIAMRSRGTPRIAGRLLRRVR----DFAEVAHAKTITREIADA 248
           +  +      + D+A   +A  S G  R     L+          +V   K+        
Sbjct: 194 SNCSSEPSVFIEDKAVDTLAYLSDGDARTGLNGLQLAVLARLSSRKVFCKKSGQTYSPSR 253

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L+     K G  +  + Y      ++         ISA     R + ++    ++ +  
Sbjct: 254 VLITENDVKEGLQRSHILYDRAGEEHYNC-------ISALHKAMRGSDQNASLYWLARML 306

Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIP 332
                P    R L+  A + +G+  P
Sbjct: 307 EGGEDPLYVARRLVRFASEDIGLADP 332


>gi|46117090|ref|XP_384563.1| hypothetical protein FG04387.1 [Gibberella zeae PH-1]
          Length = 1226

 Score =  132 bits (333), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 69/333 (20%), Positives = 112/333 (33%), Gaps = 65/333 (19%)

Query: 17   ADISLLRPRTLEEFTGQV--EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
                 +RPRTL+E  GQ        L+  IE+++     +  ++  G  G GKTT+A+ +
Sbjct: 813  PLAERMRPRTLDEVCGQDLVGPTGVLRSLIESSQ-----VPSMILWGASGTGKTTIARCI 867

Query: 75   ARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYP 127
            A  +G  F   +        +                 + ++F DEIHR +   +++   
Sbjct: 868  AHMVGSRFIELNA-TSTGVSECKKYFQEATNDLALTGRKTIIFCDEIHRFNKAQQDVFLK 926

Query: 128  AMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             +E   + L+    E PS +     LSR       +                        
Sbjct: 927  PVEAGTVTLIGATTENPSFKVASALLSRCRTFTLRS---------------------LTT 965

Query: 186  EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT----I 241
            ED+  I+QR  K            + A       R A    R   +  E+A + T    I
Sbjct: 966  EDVVRILQRAIKEEESVFPSTPLLDEA-MVTYLARFADGDARTALNLLELALSLTKREGI 1024

Query: 242  TREIADAALLRL-AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
            T+E   AAL +    D+ G    D                   TISA     R    D  
Sbjct: 1025 TQEDIKAALTKTLVYDRAGDQHYD-------------------TISAFHKSVRGNDADAA 1065

Query: 301  EPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
              Y+ +       P    R ++ IA + +G+  
Sbjct: 1066 LYYLARMLQSGEDPLFIARRMVVIASEDVGLAD 1098


>gi|182684741|ref|YP_001836488.1| AAA family ATPase [Streptococcus pneumoniae CGSP14]
 gi|182630075|gb|ACB91023.1| ATPase, AAA family [Streptococcus pneumoniae CGSP14]
          Length = 423

 Score =  132 bits (333), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 68/327 (20%), Positives = 120/327 (36%), Gaps = 44/327 (13%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            D     +RP+T+++  GQ       K+     +A    L  ++  GPPG+GKT++A  +
Sbjct: 2   PDNLALRMRPKTIDQVIGQDHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           A      FR+ +  V +K   L  +    +     VL +DEIHRL    ++ L P +E  
Sbjct: 60  AGTTKYAFRTFNATVDSKKR-LQEISEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESG 118

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
            + ++    E P         SR  +            PL ++                 
Sbjct: 119 LVIMIGATTENPFFSVTPAIRSRVQIFEL--------EPLSNQDVKEALQIALSNP---- 166

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI--TREIADA 248
             +RG     + + ++A   IA  + G  R A   L                 T +I + 
Sbjct: 167 --ERGFD-FPIELDEDALDFIATSTNGDLRSAFNSLDLAVLSTPENDEGIRHITLDIMEN 223

Query: 249 ALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           +L R    +DK G    D+  L+ + ++  G  V              ++       +I+
Sbjct: 224 SLQRSYITMDKDGDGHYDV--LSALQKSIRGSDVDA------------SLHYAAR--LIE 267

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            G +      R L  IA++ +G+  P 
Sbjct: 268 AGDLP--SLARRLTVIAYEDIGLANPE 292


>gi|148995370|ref|ZP_01824100.1| ATPase, AAA family protein [Streptococcus pneumoniae SP9-BS68]
 gi|148997835|ref|ZP_01825399.1| ATPase, AAA family protein [Streptococcus pneumoniae SP11-BS70]
 gi|168491890|ref|ZP_02716033.1| ATPase, AAA family [Streptococcus pneumoniae CDC0288-04]
 gi|168575029|ref|ZP_02720992.1| ATPase, AAA family [Streptococcus pneumoniae MLV-016]
 gi|307068401|ref|YP_003877367.1| ATPase [Streptococcus pneumoniae AP200]
 gi|147756334|gb|EDK63376.1| ATPase, AAA family protein [Streptococcus pneumoniae SP11-BS70]
 gi|147926761|gb|EDK77823.1| ATPase, AAA family protein [Streptococcus pneumoniae SP9-BS68]
 gi|183573935|gb|EDT94463.1| ATPase, AAA family [Streptococcus pneumoniae CDC0288-04]
 gi|183578824|gb|EDT99352.1| ATPase, AAA family [Streptococcus pneumoniae MLV-016]
 gi|306409938|gb|ADM85365.1| ATPase [Streptococcus pneumoniae AP200]
 gi|332199801|gb|EGJ13876.1| AAA ATPase, central region [Streptococcus pneumoniae GA41317]
          Length = 423

 Score =  132 bits (333), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 68/327 (20%), Positives = 120/327 (36%), Gaps = 44/327 (13%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            D     +RP+T+++  GQ       K+     +A    L  ++  GPPG+GKT++A  +
Sbjct: 2   PDNLALRMRPKTIDQVIGQEHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           A      FR+ +  V +K   L  +    +     VL +DEIHRL    ++ L P +E  
Sbjct: 60  AGTTKYAFRTFNATVDSKKR-LQEISEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESG 118

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
            + ++    E P         SR  +            PL ++                 
Sbjct: 119 LVIMIGATTENPFFSVTPAIRSRVQIFEL--------EPLSNQDVKEALQIALSNP---- 166

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI--TREIADA 248
             +RG     + + ++A   IA  + G  R A   L                 T +I + 
Sbjct: 167 --ERGFD-FPIELDEDALDFIATSTNGDLRSAFNSLDLAVLSTPENDEGIRHITLDIMEN 223

Query: 249 ALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           +L R    +DK G    D+  L+ + ++  G  V              ++       +I+
Sbjct: 224 SLQRSYITMDKDGDGHYDV--LSALQKSIRGSDVDA------------SLHYTAR--LIE 267

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            G +      R L  IA++ +G+  P 
Sbjct: 268 AGDLP--SLARRLTVIAYEDIGLANPE 292


>gi|110638794|ref|YP_679003.1| recombination factor protein RarA [Cytophaga hutchinsonii ATCC
           33406]
 gi|110281475|gb|ABG59661.1| ATPase, AAA family [Cytophaga hutchinsonii ATCC 33406]
          Length = 420

 Score =  132 bits (333), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 72/323 (22%), Positives = 128/323 (39%), Gaps = 46/323 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP  L++  GQ        VF    +     +  ++  GPPG+GKTTLAQ++A+
Sbjct: 5   PLAERMRPVLLQDVYGQQHLIGEGMVFRRFVEE--GKIPSMILWGPPGVGKTTLAQLLAK 62

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
            +G+ F + S  + +   ++  ++ N +   + VLFIDEIHR S   ++ L  A+E   +
Sbjct: 63  TVGLPFYTLSA-ISSGVKEVREVIANAQTDGKAVLFIDEIHRFSKSQQDALLGAVEKGTI 121

Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            L+    E PS   +   LSR  +         +  PL +   +         E +++ +
Sbjct: 122 QLIGATTENPSFEVIPALLSRCQV--------YVLQPLSEEELV---------ELMRSAL 164

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           ++ A L   +V  +    +   S G  R    LL  V D +           +   A  +
Sbjct: 165 KKDAYLKTRSVEIKEHDSLLRLSGGDARKLLNLLELVIDASGKDPIVITDAYVQKIAQKK 224

Query: 253 LA-IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ--GF 309
           +A  DK G    D+                   ISA +   R +  +    ++ +   G 
Sbjct: 225 VASYDKNGEMHYDI-------------------ISAFIKSVRGSDPNAAVYWLARMIEGG 265

Query: 310 IQRTPRGRLLMPIAWQHLGIDIP 332
                  R L+ +A + +G   P
Sbjct: 266 EDVEFIARRLLILASEDVGNANP 288


>gi|83312581|ref|YP_422845.1| recombination factor protein RarA [Magnetospirillum magneticum
           AMB-1]
 gi|82947422|dbj|BAE52286.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [Magnetospirillum magneticum AMB-1]
          Length = 430

 Score =  132 bits (333), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 75/340 (22%), Positives = 120/340 (35%), Gaps = 66/340 (19%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACS---NLKVFIEAAKARAEALDHVLFVGPPGLGK 67
             S +      LRP TLEE  GQ    +    L   + A +     L  V+  GPPG GK
Sbjct: 7   TPSGDKPLAERLRPATLEEVVGQSHLLAATAPLGRMLAAGR-----LASVILWGPPGCGK 61

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIV 121
           TT+A+++A  +G+ F   S  V +   DL  +    E R       +LF+DEIHR +   
Sbjct: 62  TTIARLLAERVGLYFEPLSA-VFSGVADLRKVFDAAEKRKQTGRSTLLFVDEIHRFNRAQ 120

Query: 122 EEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           ++   P +E+  + L+    E PS       LSR  ++                      
Sbjct: 121 QDGFLPYVENGTVVLVGATTENPSFELNGALLSRCQVLVL-------------------- 160

Query: 180 LNFYEIEDLKTIVQRGAKLT--GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            +  +   L+ ++ +        L +  +A   +   + G  R    LL    D A +  
Sbjct: 161 -HRLDDGALEDLLLKAEADLGRTLPLDSDARAAMRAMADGDGRY---LLNLAEDLAMLPP 216

Query: 238 AKTITREIADAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDA 295
              +      +A+ R   A DK      +L                   ISA     R +
Sbjct: 217 EPVLDAAGLASAVQRRAPAYDKDREGHYNL-------------------ISALHKSLRGS 257

Query: 296 IEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
             D    +M +       P    R L   A + +G+  P 
Sbjct: 258 DTDAALYWMARMLEGGEDPLFIARRLTRFAVEDIGLADPQ 297


>gi|163752933|ref|ZP_02160057.1| ATPase, AAA family protein [Kordia algicida OT-1]
 gi|161326665|gb|EDP97990.1| ATPase, AAA family protein [Kordia algicida OT-1]
          Length = 431

 Score =  132 bits (333), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 70/335 (20%), Positives = 117/335 (34%), Gaps = 62/335 (18%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +     +RP+TLE++  Q        V       R   +  +L  GPPG GKTTLA ++A
Sbjct: 9   EPLAERIRPKTLEDYISQEHLVGETGVLTRQI--RQGIIPSLLLWGPPGTGKTTLANIIA 66

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLED--------RDVLFIDEIHRLSIIVEEILYP 127
                 F + S  + +   ++  ++   +           +LFIDEIHR S   ++ L  
Sbjct: 67  TTSDRPFYTLSA-ISSGVKEVREVIQRAKQDNGLFTTKNPILFIDEIHRFSKSQQDSLLG 125

Query: 128 AMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           A+E   + L+    E PS   +   LSR  +                        N +  
Sbjct: 126 AVEKGWVTLIGATTENPSFEVIPALLSRCQVYVL---------------------NPFGK 164

Query: 186 EDLKTIVQRGAKL-TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +DL  ++QR  K  T LA       E     + +   A +LL            + +   
Sbjct: 165 DDLVKLLQRAIKEDTELAKKQIILKETEALLKLSGGDARKLLNIFELLINSEGTEKVEI- 223

Query: 245 IADAALLRLA-----IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
             D  L R+       DK G    D+                   ISA +   R +  + 
Sbjct: 224 TNDLVLSRVQKNTVLYDKTGEQHYDI-------------------ISAFIKSIRGSDPNG 264

Query: 300 IEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
              ++ +        +   R ++  A + +GI  P
Sbjct: 265 AVYWLARMIEGGEDVKFIARRMLISASEDIGIANP 299


>gi|148989581|ref|ZP_01820913.1| ATPase, AAA family protein [Streptococcus pneumoniae SP6-BS73]
 gi|149020859|ref|ZP_01835388.1| ATPase, AAA family protein [Streptococcus pneumoniae SP23-BS72]
 gi|168483316|ref|ZP_02708268.1| ATPase, AAA family [Streptococcus pneumoniae CDC1873-00]
 gi|168488503|ref|ZP_02712702.1| ATPase, AAA family [Streptococcus pneumoniae SP195]
 gi|147924898|gb|EDK75980.1| ATPase, AAA family protein [Streptococcus pneumoniae SP6-BS73]
 gi|147930500|gb|EDK81483.1| ATPase, AAA family protein [Streptococcus pneumoniae SP23-BS72]
 gi|172043264|gb|EDT51310.1| ATPase, AAA family [Streptococcus pneumoniae CDC1873-00]
 gi|183572715|gb|EDT93243.1| ATPase, AAA family [Streptococcus pneumoniae SP195]
 gi|332072610|gb|EGI83093.1| AAA ATPase, central region [Streptococcus pneumoniae GA17570]
          Length = 423

 Score =  132 bits (333), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 68/327 (20%), Positives = 120/327 (36%), Gaps = 44/327 (13%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            D     +RP+T+++  GQ       K+     +A    L  ++  GPPG+GKT++A  +
Sbjct: 2   PDNLALRMRPKTIDQVIGQEHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           A      FR+ +  V +K   L  +    +     VL +DEIHRL    ++ L P +E  
Sbjct: 60  AGTTKYAFRTFNATVDSKKR-LQEISEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESG 118

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
            + ++    E P         SR  +            PL ++                 
Sbjct: 119 LVIMIGATTENPFFSVTPAIRSRVQIFEL--------EPLSNQDVKEALQIALSNP---- 166

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI--TREIADA 248
             +RG     + + ++A   IA  + G  R A   L                 T +I + 
Sbjct: 167 --ERGFD-FPIELDEDALDFIATSTNGDLRSAFNSLDLAVLSTPENDEGIRHITLDIMEN 223

Query: 249 ALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           +L R    +DK G    D+  L+ + ++  G  V              ++       +I+
Sbjct: 224 SLQRSYITMDKDGDGHYDV--LSALQKSIRGSDVDA------------SLHYTAR--LIE 267

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            G +      R L  IA++ +G+  P 
Sbjct: 268 AGDLP--SLARRLTVIAYEDIGLANPE 292


>gi|254974821|ref|ZP_05271293.1| recombination factor protein RarA [Clostridium difficile QCD-66c26]
 gi|255092209|ref|ZP_05321687.1| recombination factor protein RarA [Clostridium difficile CIP
           107932]
 gi|255306233|ref|ZP_05350405.1| recombination factor protein RarA [Clostridium difficile ATCC
           43255]
 gi|255313948|ref|ZP_05355531.1| recombination factor protein RarA [Clostridium difficile QCD-76w55]
 gi|255516628|ref|ZP_05384304.1| recombination factor protein RarA [Clostridium difficile QCD-97b34]
 gi|255649727|ref|ZP_05396629.1| recombination factor protein RarA [Clostridium difficile QCD-37x79]
 gi|306519837|ref|ZP_07406184.1| recombination factor protein RarA [Clostridium difficile QCD-32g58]
          Length = 421

 Score =  132 bits (333), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 67/328 (20%), Positives = 123/328 (37%), Gaps = 47/328 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+T+ +  GQ     N K+   +   ++  L +++F GPPG+GKTT+A+++A 
Sbjct: 2   PLADKIRPKTMNDVIGQSHIIGNGKIL--SKILQSNFLPNMIFFGPPGVGKTTVAEIIA- 58

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE-----DRDVLFIDEIHRLSIIVEEILYPAMED 131
           E             +   D+  +++ L      +  +L+IDEI   +   ++ +   ME+
Sbjct: 59  ERSNKSFYKINATNSSLEDIKKVISELGSINNVNGVLLYIDEIQSFNKKQQQSILEFMEN 118

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             + L+    E P     K  LSR T+        L       R    +  + Y      
Sbjct: 119 GSITLIASTTENPYHYVYKALLSRSTVFEFKPLEKLDIEKGLKRAVEVLNEDSY------ 172

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA--- 246
                      +   + A  +IA+ S G  R A  +L  V    +         +     
Sbjct: 173 ---------MDIECNNNAIEDIAILSDGDMRRALNILEVVVYSTKPNKDNITYIDSDVIR 223

Query: 247 -DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
                  +  DK G    D   L+   ++  G            S+P+ +I  L    +I
Sbjct: 224 ASTFNKIINYDKNGDSHYD--ILSAFQKSIRG------------SDPQASIHYLAR--LI 267

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           + G +      R L+ IA + +G+  P+
Sbjct: 268 KGGDLISIC--RRLLVIASEDIGLAYPN 293


>gi|255100294|ref|ZP_05329271.1| recombination factor protein RarA [Clostridium difficile QCD-63q42]
          Length = 421

 Score =  132 bits (333), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 67/328 (20%), Positives = 123/328 (37%), Gaps = 47/328 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+T+ +  GQ     N K+   +   ++  L +++F GPPG+GKTT+A+++A 
Sbjct: 2   PLADKIRPKTMNDVIGQSHIIGNGKIL--SKILQSNFLPNMIFFGPPGVGKTTVAEIIA- 58

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE-----DRDVLFIDEIHRLSIIVEEILYPAMED 131
           E             +   D+  +++ L      +  +L+IDEI   +   ++ +   ME+
Sbjct: 59  ERSNKSFYKINATNSSLEDIKKVISELGSINNVNGVLLYIDEIQSFNKKQQQSILEFMEN 118

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             + L+    E P     K  LSR T+        L       R    +  + Y      
Sbjct: 119 GSITLIASTTENPYHYVYKALLSRSTVFEFKPLEKLDIEKGLKRAVEVLNEDSY------ 172

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA--- 246
                      +   + A  +IA+ S G  R A  +L  V    +         +     
Sbjct: 173 ---------MDIECNNNAIEDIAILSDGDMRRALNILEVVVYSTKPNKDNITYIDSDVIR 223

Query: 247 -DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
                  +  DK G    D   L+   ++  G            S+P+ +I  L    +I
Sbjct: 224 ASTFNKIINYDKNGDSHYD--ILSAFQKSIRG------------SDPQASIHYLAR--LI 267

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           + G +      R L+ IA + +G+  P+
Sbjct: 268 KGGDLISIC--RRLLVIASEDIGLAYPN 293


>gi|126698873|ref|YP_001087770.1| recombination factor protein RarA [Clostridium difficile 630]
          Length = 431

 Score =  132 bits (333), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 68/332 (20%), Positives = 127/332 (38%), Gaps = 47/332 (14%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           S++      +RP+T+ +  GQ     N K+   +   ++  L +++F GPPG+GKTT+A+
Sbjct: 8   SEKMPLADKIRPKTMNDVIGQSHIIGNGKIL--SKILQSNFLPNMIFFGPPGVGKTTVAE 65

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLE-----DRDVLFIDEIHRLSIIVEEILYP 127
           ++A E             +   D+  +++ L      +  +L+IDEI   +   ++ +  
Sbjct: 66  IIA-ERSNKSFYKINATNSSLEDIKKVISELGSINNVNGVLLYIDEIQSFNKKQQQSILE 124

Query: 128 AMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
            ME+  + L+    E P     K  LSR T+        L       R    +  + Y  
Sbjct: 125 FMENGSITLIASTTENPYHYVYKALLSRSTVFEFKPLEKLDVEKGLKRAVEVLNEDSY-- 182

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
                          +   ++A  +IA+ S G  R A  +L  V    +         + 
Sbjct: 183 -------------MDIECNNDAIEDIAILSDGDMRRALNILEVVVYSTKPNKDNITYIDS 229

Query: 246 A----DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
                      +  DK G    D   L+   ++  G            S+P+ +I  L  
Sbjct: 230 DVIRASTFNKIINYDKNGDSHYD--ILSAFQKSIRG------------SDPQASIHYLAR 275

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
             +I+ G +      R L+ IA + +G+  P+
Sbjct: 276 --LIKGGDLISIC--RRLLVIASEDIGLAYPN 303


>gi|238063892|ref|ZP_04608601.1| recombination factor protein rarA [Micromonospora sp. ATCC 39149]
 gi|237885703|gb|EEP74531.1| recombination factor protein rarA [Micromonospora sp. ATCC 39149]
          Length = 498

 Score =  132 bits (333), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 72/328 (21%), Positives = 114/328 (34%), Gaps = 57/328 (17%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            +RP +L+E  GQ    +      +           V+  GPPG GKTT+A +VA     
Sbjct: 40  RMRPASLDELVGQGHLLAPGAPLRQ--LVVGATPMSVILWGPPGCGKTTIAHLVAHATDR 97

Query: 81  NFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMEDFQ 133
            F + S  + A   D+ A++     +        VLFIDE+HR S   ++ L  A+ED  
Sbjct: 98  RFVAMSA-LTAGVKDVRAVIDTARRQRRSGGPQTVLFIDEVHRFSKTQQDSLLAAVEDRT 156

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAAT-----TRVGLLTNPLQDRFGIPIRLNFYEIE 186
           + L+    E P    +   LSR  L+           GLL   + D  G+       E +
Sbjct: 157 VTLLAATTENPYFSVISPLLSRCVLLTLQPLDDAAVRGLLRRAVADARGLAGAFTL-ETD 215

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
               +V+        A+T   A   +  + G  RI      +  D A V           
Sbjct: 216 AEDHLVRLAGGDVRKALTALEAAAASAAALGVDRIDLATAEQAVDVAAVR---------- 265

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
                    D+ G    D+                    SA +   R +  D    ++ +
Sbjct: 266 --------YDRAGDAHYDV-------------------TSAFIKSMRGSDVDAALHWLAR 298

Query: 307 QGFIQRTPR--GRLLMPIAWQHLGIDIP 332
                   R   R L+  A + +G+  P
Sbjct: 299 MLVAGEDARFIARRLVIFASEDVGMADP 326


>gi|168494301|ref|ZP_02718444.1| chromosome segregation helicase [Streptococcus pneumoniae
           CDC3059-06]
 gi|183575836|gb|EDT96364.1| chromosome segregation helicase [Streptococcus pneumoniae
           CDC3059-06]
          Length = 423

 Score =  132 bits (333), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 68/327 (20%), Positives = 120/327 (36%), Gaps = 44/327 (13%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            D     +RP+T+++  GQ       K+     +A    L  ++  GPPG+GKT++A  +
Sbjct: 2   PDNLALRMRPKTIDQVIGQEHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           A      FR+ +  V +K   L  +    +     VL +DEIHRL    ++ L P +E  
Sbjct: 60  AGTTKYAFRTFNATVDSKKR-LQEISEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESG 118

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
            + ++    E P         SR  +            PL ++                 
Sbjct: 119 LVIMIGATTENPFFSVTPAIRSRVQIFEL--------EPLSNQDVKEALQIALSNP---- 166

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI--TREIADA 248
             +RG     + + ++A   IA  + G  R A   L                 T +I + 
Sbjct: 167 --ERGFD-FPIELDEDALDFIATSTNGDLRSAFNSLDLAVLSTPENDEGIRHITLDIMEN 223

Query: 249 ALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           +L R    +DK G    D+  L+ + ++  G  V              ++       +I+
Sbjct: 224 SLQRSYITMDKDGDGHYDV--LSALQKSIRGSDVDA------------SLHYAAR--LIE 267

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            G +      R L  IA++ +G+  P 
Sbjct: 268 AGDLP--SLARRLTVIAYEDIGLANPE 292


>gi|257888138|ref|ZP_05667791.1| AAA ATPase [Enterococcus faecium 1,141,733]
 gi|257824192|gb|EEV51124.1| AAA ATPase [Enterococcus faecium 1,141,733]
          Length = 428

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 67/323 (20%), Positives = 114/323 (35%), Gaps = 41/323 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RPRT++E  GQ       K+      AR   L  ++  GPPG GKT++A  +A 
Sbjct: 4   PLAYRMRPRTIDEVVGQQHLVGEGKIIRRMVDAR--MLSSMILYGPPGTGKTSIASAIAG 61

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR  +    +K    + A    +    +L +DE+HRL    ++ L P +E  ++ 
Sbjct: 62  STNYAFRMLNAATDSKKELQVVAEEAKMSGTVILLLDEVHRLDKTKQDFLLPHLESGRII 121

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           L+    E P         SR  +            PL +      +     ++      +
Sbjct: 122 LIGATTENPYITINPAIRSRTQIFEV--------KPLTE------QDIQLAVKHALKDKE 167

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI--TREIADAALL 251
           RG     + + +EA   ++  + G  R A   L              I  T  I +  + 
Sbjct: 168 RGLGQQAIQLDEEALLHLSRATNGDLRSALNGLELAARSTPPDKEGKIHLTLSIIEECVQ 227

Query: 252 RLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           R A   DK G    D      +   F     G +  +A                +++ G 
Sbjct: 228 RKALTHDKNGDAHYD------VISAFQKSIRGSDVDAALH----------YLARLVEAGD 271

Query: 310 IQRTPRGRLLMPIAWQHLGIDIP 332
           +      R LM I ++ +G+  P
Sbjct: 272 LASIC--RRLMVIGYEDIGLGNP 292


>gi|237649836|ref|ZP_04524088.1| recombination factor protein RarA [Streptococcus pneumoniae CCRI
           1974]
 gi|237820763|ref|ZP_04596608.1| recombination factor protein RarA [Streptococcus pneumoniae CCRI
           1974M2]
 gi|301794760|emb|CBW37213.1| putative ATPase [Streptococcus pneumoniae INV104]
          Length = 423

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 68/327 (20%), Positives = 120/327 (36%), Gaps = 44/327 (13%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            D     +RP+T+++  GQ       K+     +A    L  ++  GPPG+GKT++A  +
Sbjct: 2   PDNLALRMRPKTIDQVIGQEHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           A      FR+ +  V +K   L  +    +     VL +DEIHRL    ++ L P +E  
Sbjct: 60  AGTTKYAFRTFNATVDSKKR-LQEISEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESG 118

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
            + ++    E P         SR  +            PL ++                 
Sbjct: 119 LVIMIGATTENPFFSVTPAIRSRVQIFEL--------EPLSNQDVKEALQIALSNP---- 166

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI--TREIADA 248
             +RG     + + ++A   IA  + G  R A   L                 T +I + 
Sbjct: 167 --ERGFD-FPIELDEDALDFIATSTNGDLRSAFNSLDLAVLSTPENDEGIRHITLDIMEN 223

Query: 249 ALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           +L R    +DK G    D+  L+ + ++  G  V              ++       +I+
Sbjct: 224 SLQRSYITMDKDGDGHYDV--LSALQKSIRGSDVDA------------SLHYAAR--LIE 267

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            G +      R L  IA++ +G+  P 
Sbjct: 268 AGDLP--SLARRLTVIAYEDIGLANPE 292


>gi|154491485|ref|ZP_02031111.1| hypothetical protein PARMER_01094 [Parabacteroides merdae ATCC
           43184]
 gi|154088460|gb|EDN87505.1| hypothetical protein PARMER_01094 [Parabacteroides merdae ATCC
           43184]
          Length = 246

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 66/261 (25%), Positives = 98/261 (37%), Gaps = 35/261 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRPRTL+E+ GQ        VF +  +     +   +  GPPG+GKTTLA++VA 
Sbjct: 4   PLAERLRPRTLDEYIGQAHLVGQNGVFRKFLETGN--VPSFILWGPPGVGKTTLAKIVAT 61

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAM 129
            L   F + S  V +   ++  +L +   +        +LFIDEIHR +   ++ L  A+
Sbjct: 62  TLKRPFYTLSA-VTSGVKEVREVLESARKQKFFDSKPPILFIDEIHRFNKSQQDSLLGAV 120

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E   + L+    E PS   +   LSR  +             L DR              
Sbjct: 121 EQGVVTLIGATTENPSFEVISPLLSRCQVYILQPMTDGELQTLLDR-------------A 167

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMR-SRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           L T  +           +    E   R S G  R    +L  +   A      TIT +  
Sbjct: 168 LATDPE-----LKTREIEVQETEALFRFSGGDARKLLNILDIITGAA--NGKVTITNQYV 220

Query: 247 DAALLRLA--IDKMGFDQLDL 265
              L +     DK G    D+
Sbjct: 221 TDCLQQNIALYDKNGEQHYDV 241


>gi|154301803|ref|XP_001551313.1| hypothetical protein BC1G_10053 [Botryotinia fuckeliana B05.10]
 gi|150855715|gb|EDN30907.1| hypothetical protein BC1G_10053 [Botryotinia fuckeliana B05.10]
          Length = 558

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 71/335 (21%), Positives = 117/335 (34%), Gaps = 69/335 (20%)

Query: 17  ADISLLRPRTLEEFTGQVEAC--SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
                +RPR+L+E  GQ        L+  IE      + +  ++  G  G GKTT+A+ V
Sbjct: 148 PLAERMRPRSLDEVCGQELVGPQGVLRSLIE-----QDRVPSMILWGGAGTGKTTIARCV 202

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYP 127
           A  +G  F   +    +  G++  + T           + ++F DEIHR S   +++   
Sbjct: 203 ATMVGSRFVEINS-TSSGVGEVKKIFTEARGELGLTGRKTIIFCDEIHRFSKSQQDVFLG 261

Query: 128 AMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
            +E  Q+ L+    E PS +     LSR      +                         
Sbjct: 262 PVESGQITLIGATTENPSFKVQNALLSRCRTFTLSK---------------------LTD 300

Query: 186 EDLKTIVQRGAKLTGLAVTD------EAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           +D+  I++R  K  G   T       E    ++  S G  R A  LL      +      
Sbjct: 301 DDILVILERALKTEGQNYTPTDLVDTELLKYLSTFSDGDARTALNLLELAMGLST---RP 357

Query: 240 TITREIADAALLRL-AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
            IT+E   A+L +    D+ G    D                   TISA     R    D
Sbjct: 358 NITKEDIKASLTKTLVYDRAGDQHYD-------------------TISAFHKSVRGGDAD 398

Query: 299 LIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
               Y+ +       P    R ++ +A + +G+  
Sbjct: 399 AALYYLARMLQSGEDPLYIARRMVVMASEDVGLAD 433


>gi|70726294|ref|YP_253208.1| recombination factor protein RarA [Staphylococcus haemolyticus
           JCSC1435]
 gi|68447018|dbj|BAE04602.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 422

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 67/325 (20%), Positives = 124/325 (38%), Gaps = 42/325 (12%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +   S +RP  ++E   Q        +     + +   L  ++F GPPG+GKT++A+ ++
Sbjct: 4   EPLASRMRPTNIDEIISQQHLVGPRGIIRRMVETK--RLSSMIFYGPPGIGKTSIAKAIS 61

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
                 FR  +  V     D+  ++   +   + +L +DEIHRL    ++ L P +E+ +
Sbjct: 62  GSTDYKFRQLNA-VTNSKKDMQMVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGK 120

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + L+      P         SR  +    +          +R                  
Sbjct: 121 IVLIGATTSNPYHAINPAIRSRAQIFELYSLDHDDVRLAINR--------------ALND 166

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA-KTITREIADAAL 250
            QRG       V ++A    A +S+G  R A   L      A V +  + IT + A   L
Sbjct: 167 SQRGLANYHPKVDEDALEYFATQSQGDVRSALNALELAVLSASVENEIRHITLQDAKDCL 226

Query: 251 LRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            + A   DK G    D+  ++   ++  G  V              A+  L    +I+ G
Sbjct: 227 QKGAFVSDKDGDMHYDV--MSAFQKSIRGSDV------------NAALHYLAR--LIEAG 270

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIPH 333
            +      R L+ I+++ +G+  P+
Sbjct: 271 DLPTIV--RRLLVISYEDVGLASPN 293


>gi|282866228|ref|ZP_06275275.1| AAA ATPase central domain protein [Streptomyces sp. ACTE]
 gi|282559012|gb|EFB64567.1| AAA ATPase central domain protein [Streptomyces sp. ACTE]
          Length = 431

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 83/334 (24%), Positives = 122/334 (36%), Gaps = 66/334 (19%)

Query: 22  LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +RPRTL+E  GQ       S L+  +  A         V+  GPPG GKTTLA VV++  
Sbjct: 1   MRPRTLDEVVGQQHLLKPGSPLRRLVGEAGGGPAGPSSVILWGPPGTGKTTLAYVVSKAT 60

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAMED 131
              F   S  + A   ++ A++              VLF+DEIHR S   ++ L PA+E+
Sbjct: 61  NKRFVELSA-ITAGVKEVRAVIEGARRATGGFGKETVLFLDEIHRFSKAQQDSLLPAVEN 119

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             + L+    E P    +            +  + L   PL D             EDL+
Sbjct: 120 RWVTLIAATTENPYFSIISP--------LLSRSLLLTLEPLTD-------------EDLR 158

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR-------VRDFAEVAHAKTIT 242
            +++R            A  E A       RIAG   RR           A   H   IT
Sbjct: 159 ALLRRAVSDERGLTGAVALPEDAEAHLL--RIAGGDARRALTALEAAAGAALAKHEAEIT 216

Query: 243 REIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
            E  +  + R A   D+ G    D+   + + ++  G  V                 D  
Sbjct: 217 LETLEETVDRAAVKYDRDGDQHYDVA--SALIKSIRGSDV-----------------DAA 257

Query: 301 EPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
             Y+ +       PR   R LM  A + +G+  P
Sbjct: 258 LHYLARMIEAGEDPRFIARRLMISASEDIGLADP 291


>gi|229493645|ref|ZP_04387430.1| recombination factor protein RarA [Rhodococcus erythropolis SK121]
 gi|229319606|gb|EEN85442.1| recombination factor protein RarA [Rhodococcus erythropolis SK121]
          Length = 470

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 83/346 (23%), Positives = 123/346 (35%), Gaps = 58/346 (16%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           E  LS  V         +RP TL E  GQ              +    A   VL  GPPG
Sbjct: 34  ERALSS-VPPGAPLAVRMRPLTLGEVVGQQHLLGPGAPLRRMVEGSGAA--SVLLYGPPG 90

Query: 65  LGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            GKTTLA +++   G  F + S        +    +LA       ++ VLFIDE+HR S 
Sbjct: 91  TGKTTLASLISGATGRRFEALSALSAGVKEVRGVIELARRRLLNGEQTVLFIDEVHRFSK 150

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR---- 173
             ++ L  A+E+  + L+    E PS   V   LSR  ++   +        L +R    
Sbjct: 151 TQQDALLAAVENRIVLLVGATTENPSFSVVSALLSRSLVLQLQSLTAADVQELLERAVAD 210

Query: 174 ---FGIPIRLNFYEIEDLKTIVQRGAK--LTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
              FG  I ++   +E L  +    A+  LT L     AA + A  + G   +    +  
Sbjct: 211 ERGFGGAITIDDDAMEHLVRLAAGDARRALTALEAAAGAALDTAGDASGPVVLDLATVEA 270

Query: 229 VRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAG 288
             D A V                    D+ G    D+                   ISA 
Sbjct: 271 SVDKAAVR------------------YDRAGDQHYDV-------------------ISAF 293

Query: 289 LSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           +   R +  D    Y+ +       PR   R L+  A + +G+  P
Sbjct: 294 IKSIRGSDVDAALHYLARMLTAGEDPRFIARRLVVHASEDIGMADP 339


>gi|319940238|ref|ZP_08014590.1| ATPase [Streptococcus anginosus 1_2_62CV]
 gi|319810540|gb|EFW06876.1| ATPase [Streptococcus anginosus 1_2_62CV]
          Length = 423

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 66/326 (20%), Positives = 118/326 (36%), Gaps = 42/326 (12%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            D     +RP+ + +  GQ       K+     +A    L  ++  GPPG+GKT++A  +
Sbjct: 2   PDNLAIRMRPKNINQVIGQKHLVGEGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           A      FR+ +  V +K      A         VL +DEIHRL    ++ L P +E+  
Sbjct: 60  AGTTKFAFRTFNATVDSKKRLQEIAEEAKFSGGLVLLLDEIHRLEKTKQDFLLPLLENGL 119

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + ++    E P         SR  +                            I+   T 
Sbjct: 120 VIMIGATTENPFFSVTPAIRSRVQIFELEPLTNDDIKQ--------------AIQTALTD 165

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA--EVAHAKTITREIADAA 249
            +RG     + + D+A   I   + G  R A   L         +    + I+ +I + +
Sbjct: 166 TERGFD-FPVQLDDDALDFITTSTNGDLRSAFNSLDLAVLSTKEDTEGVRHISLDIMENS 224

Query: 250 LLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           L +    +DK G    D+  L+ + ++  G  V              ++       +I+ 
Sbjct: 225 LQKSYITMDKDGDGHYDV--LSALQKSIRGSDV------------NASLHYAAR--LIEA 268

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
           G +      R L  IA++ +G+  P 
Sbjct: 269 GDLP--SLARRLTVIAYEDIGLANPD 292


>gi|324992260|gb|EGC24182.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
           SK405]
 gi|325688550|gb|EGD30567.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
           SK72]
          Length = 422

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 67/326 (20%), Positives = 120/326 (36%), Gaps = 42/326 (12%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            +     +RP  +++  GQ       K+     +A    L  ++  GPPG+GKT++A  +
Sbjct: 2   PENLALRMRPTDIDQIIGQQHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           A      FR+ +  V +K      A         VL +DEIHRL    ++ L P +E   
Sbjct: 60  AGTTKYAFRTFNATVDSKKRLQEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGL 119

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + ++    E P         SR  +            PL +             +     
Sbjct: 120 VIMIGATTENPFFSVTPAIRSRVQIFEL--------EPLSNEDIRTAIQLTLTDK----- 166

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA--EVAHAKTITREIADAA 249
            +RG     + + DEA   IA+ + G  R A   L         +    + IT ++ + +
Sbjct: 167 -ERGFN-FPVELDDEALDFIAISTNGDLRSAYNSLDLAVLSTPEDDKGIRHITLDVMENS 224

Query: 250 LLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           L +    +DK G    D+  L+ + ++  G  V              ++       +I+ 
Sbjct: 225 LQKSYITMDKDGDGHYDV--LSALQKSIRGSDV------------NASLHYAAR--LIEA 268

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
           G +      R L  IA++ +G+  P 
Sbjct: 269 GDLP--SLARRLTVIAYEDIGLANPD 292


>gi|191638187|ref|YP_001987353.1| Chromosome segregation helicase (Putative) [Lactobacillus casei
           BL23]
 gi|190712489|emb|CAQ66495.1| Chromosome segregation helicase (Putative) [Lactobacillus casei
           BL23]
 gi|327382219|gb|AEA53695.1| hypothetical protein LC2W_1361 [Lactobacillus casei LC2W]
 gi|327385416|gb|AEA56890.1| hypothetical protein LCBD_1393 [Lactobacillus casei BD-II]
          Length = 431

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 65/323 (20%), Positives = 108/323 (33%), Gaps = 41/323 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+ L+E  GQ +     ++      A    L  ++  GPPG GKT++A  +A 
Sbjct: 4   PLAYRMRPQNLDEVVGQQDLVGPDRIIRRMVSAH--RLSSMILYGPPGTGKTSIASAIAG 61

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR  +     K    + A    +    +L +DEIHRL    ++ L P +E  ++ 
Sbjct: 62  STKYAFRILNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPLLESGRIV 121

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           L+    E P         SR  +               +R                   +
Sbjct: 122 LIGATTENPYMNIQPAIRSRTQIFQVKPLTPDDIASAINR--------------ALADHK 167

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE--IADAALL 251
           RG     + +  +A   +   + G  R A   L         +   TIT +      +L 
Sbjct: 168 RGLGDYQVDLQPDALDYLTHATNGDLRSALNGLELAVLSTPASDDGTITIDLTTIQQSLQ 227

Query: 252 R--LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           +  LA D  G    D      I   F     G +  +A                +I  G 
Sbjct: 228 KPALAGDTNGDAHYD------IISAFQKSIRGSDADAALH----------YLARLIAIGD 271

Query: 310 IQRTPRGRLLMPIAWQHLGIDIP 332
           +      R L+ IA++ +G+  P
Sbjct: 272 LNSIT--RRLLVIAYEDIGLANP 292


>gi|270684400|ref|ZP_06222796.1| Holliday junction DNA helicase ruvB [Haemophilus influenzae HK1212]
 gi|270316265|gb|EFA28211.1| Holliday junction DNA helicase ruvB [Haemophilus influenzae HK1212]
          Length = 111

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 79/110 (71%), Positives = 96/110 (87%)

Query: 40  LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAAL 99
           + +FI+AAK R +ALDH+L  GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+
Sbjct: 1   MDIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAAM 60

Query: 100 LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKI 149
           LTNLE  DVLFIDEIHRLS  +EE+LYPAMED+QLD+M+GEGP+ARS+K 
Sbjct: 61  LTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKF 110


>gi|227892661|ref|ZP_04010466.1| crossover junction endodeoxyribonuclease [Lactobacillus ultunensis
           DSM 16047]
 gi|227865532|gb|EEJ72953.1| crossover junction endodeoxyribonuclease [Lactobacillus ultunensis
           DSM 16047]
          Length = 438

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 68/329 (20%), Positives = 108/329 (32%), Gaps = 47/329 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+ L+E  GQ       K+     +AR   L  ++  GPPG+GKT++A  +A 
Sbjct: 3   PLAYRMRPKNLDEVVGQQHLIGPGKIIRRMVEAR--LLSSMILYGPPGIGKTSIASAIAG 60

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR  +     K      A    +    VL +DEIHRL    ++ L P +E  Q+ 
Sbjct: 61  STKYAFRKLNAATDGKKQLQQVAEEGKMSGTVVLLLDEIHRLDKTKQDFLLPLLESGQII 120

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           L+    E P         SR  +           +   DR                T  +
Sbjct: 121 LIGATTENPYISISPAIRSRCQIFELKPLSSEDASKAIDR--------------ALTDKE 166

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA------EVAHAKTITREIAD 247
            G     + +TD+A   +  +  G  R     L             E     TI     +
Sbjct: 167 NGLGKYHVKLTDDARKLLIEKGNGDLRSTLNSLELAVLSTKQELKNEQKDDSTILITQKE 226

Query: 248 AA----LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
            A    +     D  G    D      +   F     G +T +A                
Sbjct: 227 MADSIQMKVQNFDASGDGHYD------LVSAFQKSIRGSDTDAALH----------YLAR 270

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           +I+ G +    +   L  IA++ +G+  P
Sbjct: 271 LIESGDLISICQ--RLSVIAYEDIGLANP 297


>gi|71019167|ref|XP_759814.1| hypothetical protein UM03667.1 [Ustilago maydis 521]
 gi|46099612|gb|EAK84845.1| hypothetical protein UM03667.1 [Ustilago maydis 521]
          Length = 566

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 73/313 (23%), Positives = 114/313 (36%), Gaps = 55/313 (17%)

Query: 19  ISLLRPRTLEEFTGQVEAC-SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
              +RP+TL+E+ GQ +     LK+ +   K     +  ++  GPPG GKTTLA+++A+ 
Sbjct: 29  AERMRPQTLDEYVGQSDVVNGPLKMLLRQGK-----IPSMILWGPPGTGKTTLARLLAKS 83

Query: 78  LG-----------VNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSI 119
                         +         + A D+  +L            R +LFIDEI R + 
Sbjct: 84  ASSTDSTCRQGPPPHRFVEISATNSGANDVKKILDEALHRLELTAQRTLLFIDEIQRFNR 143

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             +++L PA+E  Q+ L+    E PS R     +SR        RV +LT    D     
Sbjct: 144 AQQDVLLPAVEKGQIVLVAATTENPSFRLQSALISRM-------RVFVLTKLSVDECCQV 196

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAA-CEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
           +R     ++       + A+    A  DE     IA  + G  R A   L       + +
Sbjct: 197 LRNALASVKRESDQADQHAECVAAAYIDEHLIRWIANMADGDARTALGALELALSTTDAS 256

Query: 237 HAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRD 294
                       AL R A   D+ G    D                   TISA     R 
Sbjct: 257 VCSAENVSRLKTALKRTALQYDRTGDMHYD-------------------TISALHKSIRG 297

Query: 295 AIEDLIEPYMIQQ 307
           +  D    ++ + 
Sbjct: 298 SDADAALYWLARM 310


>gi|318057090|ref|ZP_07975813.1| recombination factor protein RarA [Streptomyces sp. SA3_actG]
 gi|318077863|ref|ZP_07985195.1| recombination factor protein RarA [Streptomyces sp. SA3_actF]
          Length = 447

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 74/336 (22%), Positives = 116/336 (34%), Gaps = 52/336 (15%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACS---NLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
                    +RPRTL+E  GQ         L+  +            V+  GPPG GKTT
Sbjct: 14  PSNSPLAVRMRPRTLDEVVGQQHLLGAGSPLRRLVGEGDGGPAGASSVILWGPPGTGKTT 73

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVE 122
           LA VV++     F   S  + A   ++  ++              VLF+DEIHR S   +
Sbjct: 74  LAYVVSKATNARFVELSA-ITAGVKEVRTVIDGARRASGGYGKDTVLFLDEIHRFSKAQQ 132

Query: 123 EILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           + L PA+E+  + L+    E P    +            +  + L   PL D     +  
Sbjct: 133 DSLLPAVENRWVTLIAATTENPYFSVI--------SPLLSRSLLLTLEPLTDEDIRALLH 184

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
                E       RG K   + + D+A   +   + G  R A   L      A       
Sbjct: 185 RALTDE-------RGLKG-AVTLPDDAEEHLLRVAGGDARRALTALEAGAGAALAKKEPE 236

Query: 241 ITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
           IT    +  + + A   D+ G    D+   + + ++  G  V                 D
Sbjct: 237 ITLRTLEETVNKAALKYDRDGDQHYDVA--SALIKSIRGSDV-----------------D 277

Query: 299 LIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
               Y+ +       PR   R LM  A + +G+  P
Sbjct: 278 AALHYLARMIEAGEDPRFIARRLMISASEDIGLADP 313


>gi|257066688|ref|YP_003152944.1| AAA ATPase central domain-containing protein [Anaerococcus prevotii
           DSM 20548]
 gi|256798568|gb|ACV29223.1| AAA ATPase central domain protein [Anaerococcus prevotii DSM 20548]
          Length = 428

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 76/344 (22%), Positives = 130/344 (37%), Gaps = 46/344 (13%)

Query: 2   MDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MD   L   N  ++ A ++  LRP+ L ++ GQ     + K+     KA  + +  ++F 
Sbjct: 1   MDLFELNRINQLEKSAPLADRLRPKDLSDYLGQNHLIGDGKIINRMIKA--DRIYSMIFY 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDE 113
           GPPG+GKT+LA++++++  + F   S  V +   DL   +   +D       + +LFIDE
Sbjct: 59  GPPGVGKTSLAKIISQKTNMAFEEISA-VASGISDLKKKVQIAKDNLSFENKKTILFIDE 117

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++ L P +ED  L L+    E P     K  +SR  +    +      + L 
Sbjct: 118 IHRFNKSQQDYLLPYVEDSTLILIGATTENPYFEVNKALISRMYVFELKSLSDRDLSRLI 177

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
           D               L        K   + + DEA   +   S G  R     L  +  
Sbjct: 178 D---------------LALSKDEILKTKDIIIEDEARDTLIKYSNGDSRALLNALE-IAI 221

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
           F+E      I                 G   ++      IA     G    +T SA +  
Sbjct: 222 FSEDEIDGRIVI---------------GKSSIENSTQKKIAVYDKNGDRHYDTTSAFIKS 266

Query: 292 PRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            R +  D    Y+ +        +   R ++  A + +    P+
Sbjct: 267 MRGSDIDAALFYLAKMLESGEDIKFIARRMIIFASEDISNADPN 310


>gi|315174320|gb|EFU18337.1| recombination factor protein RarA [Enterococcus faecalis TX1346]
          Length = 425

 Score =  132 bits (332), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 68/327 (20%), Positives = 116/327 (35%), Gaps = 49/327 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RPR L+E  GQ       K+     +A+   L  ++  GPPG GKT++A  +A 
Sbjct: 4   PLAYRMRPRHLDEVVGQQHLVGPGKIIRRMVEAK--MLSSMILYGPPGTGKTSIASAIAG 61

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR  +     K    + A    +    +L +DEIHRL    ++ L P +E+ ++ 
Sbjct: 62  STNYAFRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPHLENGRI- 120

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ-- 193
           +M+G       + IN                   ++ R  I       E +  + I +  
Sbjct: 121 IMIGATTENPYITIN-----------------PAIRSRTQIFEVKPLTETDIQQAIQEAL 163

Query: 194 ----RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT--ITREIAD 247
               RG     + + ++A   +   + G  R A   L                IT  I +
Sbjct: 164 TDSTRGLGDYPVHLEEKALQHLTRATNGDLRSALNGLELAVKSTPKNEQGEIKITLPIIE 223

Query: 248 AALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
             + R A   DK G    D      +   F     G +  +A                ++
Sbjct: 224 ECMQRKALTHDKDGDAHYD------VISAFQKSIRGSDVDAALH----------YLGRLV 267

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           + G +      R LM IA++ +G+  P
Sbjct: 268 EAGDLPIIC--RRLMVIAYEDIGLGNP 292


>gi|328887601|emb|CAJ68132.2| putative replication-associated recombination protein A RarA
           [Clostridium difficile]
          Length = 421

 Score =  132 bits (332), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 67/328 (20%), Positives = 124/328 (37%), Gaps = 47/328 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+T+ +  GQ     N K+   +   ++  L +++F GPPG+GKTT+A+++A 
Sbjct: 2   PLADKIRPKTMNDVIGQSHIIGNGKIL--SKILQSNFLPNMIFFGPPGVGKTTVAEIIA- 58

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE-----DRDVLFIDEIHRLSIIVEEILYPAMED 131
           E             +   D+  +++ L      +  +L+IDEI   +   ++ +   ME+
Sbjct: 59  ERSNKSFYKINATNSSLEDIKKVISELGSINNVNGVLLYIDEIQSFNKKQQQSILEFMEN 118

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             + L+    E P     K  LSR T+        L       R    +  + Y      
Sbjct: 119 GSITLIASTTENPYHYVYKALLSRSTVFEFKPLEKLDVEKGLKRAVEVLNEDSY------ 172

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA--- 246
                      +   ++A  +IA+ S G  R A  +L  V    +         +     
Sbjct: 173 ---------MDIECNNDAIEDIAILSDGDMRRALNILEVVVYSTKPNKDNITYIDSDVIR 223

Query: 247 -DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
                  +  DK G    D   L+   ++  G            S+P+ +I  L    +I
Sbjct: 224 ASTFNKIINYDKNGDSHYD--ILSAFQKSIRG------------SDPQASIHYLAR--LI 267

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           + G +      R L+ IA + +G+  P+
Sbjct: 268 KGGDLISIC--RRLLVIASEDIGLAYPN 293


>gi|325287034|ref|YP_004262824.1| AAA ATPase central domain-containing protein [Cellulophaga lytica
           DSM 7489]
 gi|324322488|gb|ADY29953.1| AAA ATPase central domain protein [Cellulophaga lytica DSM 7489]
          Length = 425

 Score =  132 bits (332), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 66/333 (19%), Positives = 118/333 (35%), Gaps = 56/333 (16%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            +     +RP+TL E+  Q     +     +  K     L  ++  GPPG GKTTLA ++
Sbjct: 2   NEPLAERVRPKTLTEYVSQTHLVGDNGTLTQQIKR--GILPSLILWGPPGTGKTTLANII 59

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLE--------DRDVLFIDEIHRLSIIVEEILY 126
           A E+   F + S  + +   D+  ++   +           +LFIDEIHR S   ++ L 
Sbjct: 60  ANEIDRPFYTLSA-ISSGVKDVREVIEKAKKSGGLFTTKNPILFIDEIHRFSKSQQDSLL 118

Query: 127 PAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
            A+E   + L+    E PS   +   LSR  +                   I    + ++
Sbjct: 119 AAVEKGWVTLIGATTENPSFEVIPALLSRCQVY------------------ILKPFDKHD 160

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMR-SRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           +  L     R          +    E  +R S G  R    +   V + +E      IT 
Sbjct: 161 LVTLLERAIRQDAQLQKKKIELKETEALLRLSGGDGRKLLNMFELVIN-SEDTEDVVITD 219

Query: 244 EIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           E+  + + +     DK G    D+                   +SA +   R +  +   
Sbjct: 220 ELVLSKVQKNTVLYDKTGEQHYDI-------------------VSAFIKSIRGSDPNGAV 260

Query: 302 PYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
            ++ +        +   R ++  A + +G   P
Sbjct: 261 YWLARMIEGGEDVKFIARRMLIAASEDIGNANP 293


>gi|257896971|ref|ZP_05676624.1| AAA ATPase [Enterococcus faecium Com12]
 gi|293378673|ref|ZP_06624832.1| recombination factor protein RarA [Enterococcus faecium PC4.1]
 gi|257833536|gb|EEV59957.1| AAA ATPase [Enterococcus faecium Com12]
 gi|292642713|gb|EFF60864.1| recombination factor protein RarA [Enterococcus faecium PC4.1]
          Length = 428

 Score =  132 bits (332), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 67/323 (20%), Positives = 114/323 (35%), Gaps = 41/323 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RPRT++E  GQ       K+      AR   L  ++  GPPG GKT++A  +A 
Sbjct: 4   PLAYRMRPRTIDEVVGQQHLVGEGKIIRRMVDAR--MLSSMILYGPPGTGKTSIASAIAG 61

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR  +    +K    + A    +    +L +DE+HRL    ++ L P +E  ++ 
Sbjct: 62  STNYAFRMLNAATDSKKELQVVAEEAKMSGTVILLLDEVHRLDKTKQDFLLPHLESGRII 121

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           L+    E P         SR  +            PL +      +     ++      +
Sbjct: 122 LIGATTENPYITINPAIRSRTQIFEV--------KPLTE------QDIQLAVKHALKDKE 167

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI--TREIADAALL 251
           RG     + + +EA   ++  + G  R A   L              I  T  I +  + 
Sbjct: 168 RGLGQQAIQLDEEALLHLSRATNGDLRSALNGLELAARSTPPDKEGKIHLTLSIIEECVQ 227

Query: 252 RLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           R A   DK G    D      +   F     G +  +A                +++ G 
Sbjct: 228 RKALTHDKNGDAHYD------VISAFQKSIRGSDVDAALH----------YLARLVEAGD 271

Query: 310 IQRTPRGRLLMPIAWQHLGIDIP 332
           +      R LM I ++ +G+  P
Sbjct: 272 LASIC--RRLMVIGYEDIGLGNP 292


>gi|320451464|ref|YP_004203560.1| AAA family ATPase [Thermus scotoductus SA-01]
 gi|320151633|gb|ADW23011.1| ATPase, AAA family [Thermus scotoductus SA-01]
          Length = 415

 Score =  132 bits (332), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 73/323 (22%), Positives = 114/323 (35%), Gaps = 49/323 (15%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +     LRPR+L+E  GQ        +     +A+   L  ++  GPPG GKTTLAQ++A
Sbjct: 5   EPLAERLRPRSLDEVLGQPHLTGPKGLLRRMLEAK--RLSSMVLFGPPGTGKTTLAQILA 62

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             +G  F   S  V A   ++ A++         VLF+DE+HR +   ++ L P +E   
Sbjct: 63  EGVGKPFLRLSA-VEAGVKEVRAVVERARREGGLVLFLDEVHRFNRTQQDALLPHLESGL 121

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           L L+    E P+        SR               PL +   + +             
Sbjct: 122 LTLIGATAENPAFELTPALRSRLRFFPLR--------PLSEEDLLALLKKALTDPR---- 169

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
                 L G    +EA   +A  + G  R A   L        V  +             
Sbjct: 170 -----GLPGTPFEEEALRLLAQAAGGDARFALNTLELAASLGRVDASSVREA----LGAE 220

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
           R A+D+ G    DL                   +SA     R +  D    Y+ +     
Sbjct: 221 RFAMDREGDQFYDL-------------------VSALHKSLRGSHVDASLYYLARLLKAG 261

Query: 312 RTP--RGRLLMPIAWQHLGIDIP 332
             P    R L+ +A + +G+  P
Sbjct: 262 ADPLYLARRLIRVAVEDVGLADP 284


>gi|302517979|ref|ZP_07270321.1| recombination factor protein RarA [Streptomyces sp. SPB78]
 gi|302426874|gb|EFK98689.1| recombination factor protein RarA [Streptomyces sp. SPB78]
          Length = 451

 Score =  132 bits (332), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 77/353 (21%), Positives = 125/353 (35%), Gaps = 58/353 (16%)

Query: 2   MDREGLLSRNVSQEDADIS------LLRPRTLEEFTGQVEACS---NLKVFIEAAKARAE 52
           M+ +   +    +++ D S       +RPRTL+E  GQ         L+  +        
Sbjct: 1   MEPDLFTAAAEERQEKDPSNSPLAVRMRPRTLDEVVGQQHLLGAGSPLRRLVGEGDGGPA 60

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------ED 105
               V+  GPPG GKTTLA VV++     F   S  + A   ++  ++            
Sbjct: 61  GASSVILWGPPGTGKTTLAYVVSKATNARFVELSA-ITAGVKEVRTVIDGARRASGGYGK 119

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRV 163
             VLF+DEIHR S   ++ L PA+E+  + L+    E P    +            +  +
Sbjct: 120 DTVLFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYFSVI--------SPLLSRSL 171

Query: 164 GLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAG 223
            L   PL D     +       E       RG K   + + D+A   +   + G  R A 
Sbjct: 172 LLTLEPLTDEDIRALLHRALTDE-------RGLKG-AVTLPDDAEEHLLRVAGGDARRAL 223

Query: 224 RLLRRVRDFAEVAHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVG 281
             L      A       IT    +  + + A   D+ G    D+   + + ++  G  V 
Sbjct: 224 TALEAGAGAALAKKEPEITLRTLEETVNKAALKYDRDGDQHYDVA--SALIKSIRGSDV- 280

Query: 282 IETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
                           D    Y+ +       PR   R LM  A + +G+  P
Sbjct: 281 ----------------DAALHYLARMIEAGEDPRFIARRLMISASEDIGLADP 317


>gi|325568303|ref|ZP_08144670.1| replication-associated recombination protein A [Enterococcus
           casseliflavus ATCC 12755]
 gi|325158072|gb|EGC70225.1| replication-associated recombination protein A [Enterococcus
           casseliflavus ATCC 12755]
          Length = 425

 Score =  132 bits (332), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 73/321 (22%), Positives = 122/321 (38%), Gaps = 37/321 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RPR L+E  GQ       K+     +A+   L  ++  GPPG GKT++A  +A 
Sbjct: 4   PLAYRMRPRNLDEVVGQQHLVGPGKIIRRMVEAK--MLSSMILYGPPGTGKTSIASAIAG 61

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR  +     K    + A    +    +L +DE+HRL    ++ L P +E  ++ 
Sbjct: 62  STRYAFRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEVHRLDKTKQDFLLPHLESGKI- 120

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           +M+G       + IN +    I + T++  +  PLQ+   +         E       RG
Sbjct: 121 IMIGATTENPYITINPA----IRSRTQIFEV-KPLQEEDILTAIDQALADE------TRG 169

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI--TREIADAALLRL 253
                + VTD+A   ++  + G  R A   L              I  T  I +  + R 
Sbjct: 170 LGSETIVVTDDARLHLSRATNGDLRSALNGLELAARSTPKGPDGIIHLTLAIIEECVQRK 229

Query: 254 A--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
           A   DK G    D      +   F          S   S+   A+  L    +++ G + 
Sbjct: 230 ALTHDKDGDAHYD------VISAFQK--------SIRGSDVDGALHYLGR--LVEAGDLA 273

Query: 312 RTPRGRLLMPIAWQHLGIDIP 332
                R LM I ++ +G+  P
Sbjct: 274 IIC--RRLMVIGYEDIGLANP 292


>gi|257462974|ref|ZP_05627378.1| recombination factor protein RarA [Fusobacterium sp. D12]
 gi|317060591|ref|ZP_07925076.1| recombination factor protein RarA [Fusobacterium sp. D12]
 gi|313686267|gb|EFS23102.1| recombination factor protein RarA [Fusobacterium sp. D12]
          Length = 410

 Score =  132 bits (332), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 64/338 (18%), Positives = 116/338 (34%), Gaps = 56/338 (16%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            L   N          LRP++L+E  GQ        V  +  +     L + +F GPPG 
Sbjct: 2   NLFESNYEAVKPLSFQLRPQSLDEIFGQENLLGKHGVLRKLIEK--GTLTNSIFFGPPGC 59

Query: 66  GKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
           GK++L ++++  +   F S +             G     +   + + +LF+DEIHR + 
Sbjct: 60  GKSSLGEIISHTMDCAFESLNATTASLQDIKEVVGKAKRNIEYYQKKTILFLDEIHRFNK 119

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           + ++ L    ED    L+    E P        LSR                      + 
Sbjct: 120 LQQDALLSYCEDGTFILIGATTENPYYSLNNALLSRV---------------------MV 158

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                 E + ++ I+ R  + TG++++      +   ++G  R+A   L   ++      
Sbjct: 159 FEFKALEKQAIQQILTRAQQKTGISLSPFLEDVMVEMAQGDSRVALNYLELYQNV----K 214

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
                 EI    + R        D+ D+                   ISA +   R +  
Sbjct: 215 DSLSEEEIYQVFMERKHSFHKTQDKYDM-------------------ISAMIKSMRGSDP 255

Query: 298 DLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           D    ++         PR   R +M  A + +G+  P 
Sbjct: 256 DAAVYWLGCLLEGGEDPRYMARRIMIQACEDVGMANPE 293


>gi|125717113|ref|YP_001034246.1| recombination factor protein RarA [Streptococcus sanguinis SK36]
 gi|125497030|gb|ABN43696.1| Chromosome segregation helicase, putative [Streptococcus sanguinis
           SK36]
 gi|325697800|gb|EGD39684.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
           SK160]
          Length = 422

 Score =  132 bits (332), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 66/326 (20%), Positives = 120/326 (36%), Gaps = 42/326 (12%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            +     +RP  +++  GQ       K+     +A    L  ++  GPPG+GKT++A  +
Sbjct: 2   PENLALRMRPTDIDQIIGQQHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           A      FR+ +  V +K      A         VL +DEIHRL    ++ L P +E   
Sbjct: 60  AGTTKFAFRTFNATVDSKKRLQEVAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGL 119

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + ++    E P         SR  +            PL +             +     
Sbjct: 120 VIMIGATTENPFFSVTPAIRSRVQIFEL--------EPLSNDDIRTAIQLALTDK----- 166

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA--EVAHAKTITREIADAA 249
            +RG     + + DEA   IA+ + G  R A   L         +    + IT ++ + +
Sbjct: 167 -ERGFD-FPVELDDEALDFIAISTNGDLRSAYNSLDLAVLSTPEDSKGIRHITLDVMENS 224

Query: 250 LLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           L +    +DK G    D+  L+ + ++  G  V              ++       +++ 
Sbjct: 225 LQKSYITMDKDGDGHYDV--LSALQKSIRGSDV------------NASLHYAAR--LVEA 268

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
           G +      R L  IA++ +G+  P 
Sbjct: 269 GDLP--SLARRLTVIAYEDIGLANPD 292


>gi|90962054|ref|YP_535970.1| recombination factor protein RarA [Lactobacillus salivarius UCC118]
 gi|90821248|gb|ABD99887.1| ATPase, AAA family [Lactobacillus salivarius UCC118]
          Length = 423

 Score =  132 bits (332), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 65/319 (20%), Positives = 125/319 (39%), Gaps = 37/319 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+ +++  GQ       K+     +A+   L  ++  GPPG GKT++A  +A 
Sbjct: 3   PLAYRMRPKNIDDVVGQQHLVGPGKIIRRMVEAK--LLSSMILYGPPGTGKTSIASAIAG 60

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR  +    +K   +            +L +DEIHRL+   ++ L P +ED  + 
Sbjct: 61  STKYAFRKMNAATDSKKKLEQVVEEAKFSGTVILLLDEIHRLTKPKQDFLLPHLEDGHI- 119

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           +++G       + IN +    I + T++  +    +D     I     + +D       G
Sbjct: 120 ILIGATTENPYISINPA----IRSRTQIFEVHPLNEDDIIQAINRAITDKDD-------G 168

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK--TITREIADAALLRL 253
                L + D+A  ++A+ + G  R     L                +T EI +  + R 
Sbjct: 169 LGELPLQINDDAMHQLAIATHGDLRSTLNALELAAKSTPKNSEGNIVLTLEIIEECMQRK 228

Query: 254 A--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
           A   DK G    ++  ++ + ++  G  V              A+  L    +I+   + 
Sbjct: 229 ALVQDKDGDAHYNV--ISALQKSIRGSDVDA------------ALHYLAR--LIEAEDLP 272

Query: 312 RTPRGRLLMPIAWQHLGID 330
              R RL+  IA++ +G+ 
Sbjct: 273 SISR-RLIT-IAYEDIGLA 289


>gi|328945355|gb|EGG39508.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
           SK1087]
          Length = 422

 Score =  132 bits (332), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 67/326 (20%), Positives = 120/326 (36%), Gaps = 42/326 (12%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            +     +RP  +++  GQ       K+     +A    L  ++  GPPG+GKT++A  +
Sbjct: 2   PENLALRMRPTDIDQIIGQQHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           A      FR+ +  V +K      A         VL +DEIHRL    ++ L P +E   
Sbjct: 60  AGTTKYAFRTFNATVDSKKRLQEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGL 119

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + ++    E P         SR  +            PL +             +     
Sbjct: 120 VIMIGATTENPFFSVTPAIRSRVQIFEL--------EPLSNDDIRTAIQLALTDK----- 166

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA--EVAHAKTITREIADAA 249
            +RG     + + DEA   IA+ + G  R A   L         +    + IT ++ + +
Sbjct: 167 -ERGFD-FPVELDDEALEFIAISTNGDLRSAYNSLDLAVLSTPEDSKGIRHITLDVMENS 224

Query: 250 LLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           L +    +DK G    D+  L+ + ++  G  V              ++       +I+ 
Sbjct: 225 LQKSYITMDKDGDGHYDV--LSALQKSIRGSDV------------NASLHYAAR--LIEA 268

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
           G +      R L  IA++ +G+  P 
Sbjct: 269 GDLP--SLARRLTVIAYEDIGLANPD 292


>gi|71064675|ref|YP_263402.1| recombination factor protein RarA [Psychrobacter arcticus 273-4]
 gi|71037660|gb|AAZ17968.1| Recombination protein MgsA [Psychrobacter arcticus 273-4]
          Length = 429

 Score =  132 bits (332), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 64/338 (18%), Positives = 114/338 (33%), Gaps = 52/338 (15%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           +  N   +      +RP TL+   GQ    +         +     L  ++  G  G+GK
Sbjct: 1   MPPNFHADTPLAQRMRPTTLDTIIGQEHLLAVGAPLRRLVEQGH--LPSIILHGEAGIGK 58

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE----DRDVLFIDEIHRLSIIVEE 123
           TT+A ++A  +G  F + S  +      L  +L + +    +  V+FIDEIHR +   ++
Sbjct: 59  TTIAMLLADAVGRPFHALSA-LNTGVKQLREVLDSKDSLSFESPVVFIDEIHRFNKAQQD 117

Query: 124 ILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
            L  A+E   + L+    E PS       LSR  +                         
Sbjct: 118 ALLGAVESGDITLIGATTENPSFSVNNALLSRCQVYRL---------------------E 156

Query: 182 FYEIEDLKTIVQRGA---KLTGLAVTDEAACEIAMR-SRGTPRIAGRLLRRVRDFAEVAH 237
               E +  ++QR      +      D  A +   + + G  R +  LL      A+   
Sbjct: 157 PLTPEQISAVLQRALLEDNVLKQLSIDLQAQQTISQLAHGDARKSLNLLELAIQTADTKQ 216

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
           +  I  +   A                    T + R    G    + +SA +   R +  
Sbjct: 217 SPIIIDDALVA----------------RVAQTALVRYDKDGEQHYDIVSAMIKSVRGSDP 260

Query: 298 DLIEPYMIQQGFIQ--RTPRGRLLMPIAWQHLGIDIPH 333
           D    +M +            R L+ +A + +G   P+
Sbjct: 261 DAALYWMARMLVGGEPADFIARRLVILASEDIGNANPN 298


>gi|104773804|ref|YP_618784.1| recombination factor protein RarA [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|116513810|ref|YP_812716.1| recombination factor protein RarA [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|103422885|emb|CAI97547.1| Putative ATPase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
 gi|116093125|gb|ABJ58278.1| Recombination protein MgsA [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|325125468|gb|ADY84798.1| Chromosomal segregation helicase [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 434

 Score =  132 bits (332), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 72/324 (22%), Positives = 126/324 (38%), Gaps = 37/324 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+++++  GQ       K+     +AR   L  ++  GPPG+GKT++A  +A 
Sbjct: 3   PLAYRMRPQSIDQVVGQQHLVGPKKIIRRMVEARQ--LSSMILYGPPGIGKTSIASAIAG 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLT--NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
                FR  +        +L+ +     +    VL +DEIHRL+ + ++ L P +E  Q+
Sbjct: 61  SSKYAFRQLNAAT-DGQKELSQVAAEGKMSGTVVLLLDEIHRLNKVKQDFLLPLLESGQV 119

Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            ++    E P         SR  +            PL +   +         E      
Sbjct: 120 IMIGATTENPYLAISPAIRSRCQIFEL--------KPLTEEEILTAVDRALTDE------ 165

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           +RG       +T EA   +A +  G  R     L      A ++  + +  E  DA+ L 
Sbjct: 166 ERGLGKYHAKLTKEAGEFLAQKGNGDLRATLNSLE----LAVLSTKQELEAEGKDASSLT 221

Query: 253 LAIDKMGFDQLDLRYLTMIARNFG-GGPVGIETISAGLSEPRDAIEDLIEPY---MIQQG 308
           + +D M         L M  +NF   G    + +SA     R +  D    Y   +++ G
Sbjct: 222 VTLDDMADS------LQMKIQNFDADGDGHYDLLSAFQKSIRGSDTDAGLHYLGRLLESG 275

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIP 332
            +      R L  IA++ +G+  P
Sbjct: 276 DLVSIC--RRLSVIAYEDIGLANP 297


>gi|257877045|ref|ZP_05656698.1| AAA ATPase [Enterococcus casseliflavus EC20]
 gi|257811211|gb|EEV40031.1| AAA ATPase [Enterococcus casseliflavus EC20]
          Length = 425

 Score =  132 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 72/321 (22%), Positives = 122/321 (38%), Gaps = 37/321 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RPR L+E  GQ       K+     +A+   L  ++  GPPG GKT++A  +A 
Sbjct: 4   PLAYRMRPRNLDEVVGQQHLVGPGKIIRRMVEAK--MLSSMILYGPPGTGKTSIASAIAG 61

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR  +     K    + A    +    +L +DE+HRL    ++ L P +E  ++ 
Sbjct: 62  STRYAFRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEVHRLDKTKQDFLLPHLESGKI- 120

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           +M+G       + IN +    I + T++  +  PLQ+   +         E       RG
Sbjct: 121 IMIGATTENPYITINPA----IRSRTQIFEV-KPLQEEDILTAIDQALADE------TRG 169

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI--TREIADAALLRL 253
                + +TD+A   ++  + G  R A   L              I  T  I +  + R 
Sbjct: 170 LGSETIVLTDDARLHLSRATNGDLRSALNGLELAARSTPKGPDGIIHLTLAIIEECVQRK 229

Query: 254 A--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
           A   DK G    D      +   F          S   S+   A+  L    +++ G + 
Sbjct: 230 ALTHDKDGDAHYD------VISAFQK--------SIRGSDVDGALHYLGR--LVEAGDLA 273

Query: 312 RTPRGRLLMPIAWQHLGIDIP 332
                R LM I ++ +G+  P
Sbjct: 274 IIC--RRLMVIGYEDIGLANP 292


>gi|163840727|ref|YP_001625132.1| recombination factor protein RarA [Renibacterium salmoninarum ATCC
           33209]
 gi|162954203|gb|ABY23718.1| ATPase, AAA family [Renibacterium salmoninarum ATCC 33209]
          Length = 462

 Score =  132 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 82/326 (25%), Positives = 121/326 (37%), Gaps = 39/326 (11%)

Query: 21  LLRPRTLEEFTGQVEACS---NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
            +RPR L+E  GQ         L+    AA   A     ++  GPPG GKTTLA V+AR 
Sbjct: 30  RMRPRNLDEVLGQQHLLGEGSPLRRLSAAANDSAAGPTSLILWGPPGTGKTTLAHVIARG 89

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAME 130
            G +F   S  + A   D+  ++ +            VLF+DEIHR +   ++ L P +E
Sbjct: 90  PGRSFVELSA-ITAGVKDVRKVMDDALTASDLHGRTTVLFLDEIHRFTKAQQDALLPGVE 148

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +  + L+    E PS   V   LSR  L+            L  R               
Sbjct: 149 NRWVVLVAATTENPSFSVVAPLLSRSLLLTLQPLTDADIRALIVR--------------- 193

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             I  RG     L ++D+A   +   + G  R A   L      A     K    E +  
Sbjct: 194 AVIDPRGLDG-SLELSDDALDHLVRLASGDARRALTTLEAAAGVALERMEKAGAGEQSTP 252

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  +   +   D   +RY          G    + ISA +   R +  D    Y+ +  
Sbjct: 253 TLELVDA-ERAIDAAAVRYDRA-------GDQHYDVISAFIKSIRGSDVDASLHYLARML 304

Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIP 332
                PR   R L+  A + +G+  P
Sbjct: 305 EAGEDPRFISRRLIISASEDVGMADP 330


>gi|56807432|ref|ZP_00365394.1| COG2256: ATPase related to the helicase subunit of the Holliday
           junction resolvase [Streptococcus pyogenes M49 591]
          Length = 353

 Score =  132 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 68/326 (20%), Positives = 118/326 (36%), Gaps = 42/326 (12%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            D     +RP+T+ E  GQ       K+     +A    L  ++  GPPG+GKT++A  +
Sbjct: 2   PDHLALRMRPKTISEVIGQKHLVGEGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           A      FR+ +  + +K      A         VL +DEIHRL    ++ L P +E+  
Sbjct: 60  AGTTRYAFRTFNATIDSKKRLQEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGT 119

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + ++    E P         SR  +            PL +            I+   + 
Sbjct: 120 IIMIGATTENPFFSVTPAIRSRVQIFEL--------EPLSNEDIKTA------IQLAISD 165

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT--REIADAA 249
            +RG     + + DEA   I   + G  R A   L             +     E  + +
Sbjct: 166 KERGFPFL-VTIDDEALDFIVTTTNGDLRSAYNSLDLAVMSTSPNEDSSRHISLETMENS 224

Query: 250 LLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           L R    +DK G    D+  L+ + ++  G  V              ++       +++ 
Sbjct: 225 LQRSYITMDKNGDGHYDV--LSALQKSIRGSDV------------NASLHYAAR--LVEA 268

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
           G +      R L  IA++ +G+  P 
Sbjct: 269 GDLP--SLARRLTIIAYEDIGLANPD 292


>gi|242242900|ref|ZP_04797345.1| crossover junction endodeoxyribonuclease ATPase [Staphylococcus
           epidermidis W23144]
 gi|242233675|gb|EES35987.1| crossover junction endodeoxyribonuclease ATPase [Staphylococcus
           epidermidis W23144]
          Length = 423

 Score =  132 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 65/326 (19%), Positives = 123/326 (37%), Gaps = 43/326 (13%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +   S +RP+ ++E   Q        +       +   L  ++F GPPG+GKT++A+ ++
Sbjct: 4   EPLASRMRPKNIDEIISQQHLVGPKGIIRRMVDTK--RLSSMIFYGPPGIGKTSIAKAIS 61

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
                 FR  +  V     D+  ++   +   + +L +DEIHRL    ++ L P +E+ +
Sbjct: 62  GSTQFKFRQLNA-VTNTKKDMQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGK 120

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + L+      P         SR  +               DR                  
Sbjct: 121 IVLIGATTSNPYHAINPAIRSRAQIFELYPLNQDDIRLALDR--------------AIND 166

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV--AHAKTITREIADAA 249
            +RG       V ++A    + +S+G  R A   L      A +   + + IT + A   
Sbjct: 167 KERGLSTYHPIVDEDAIEYFSTQSQGDVRSALNALELAVLSAHIDEQNERHITLDDAKDC 226

Query: 250 LLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           L + A   DK G    D+  ++   ++  G  V              A+  L    +I+ 
Sbjct: 227 LQKGAFVSDKDGDMHYDV--MSAFQKSIRGSDV------------NAALHYLAR--LIEA 270

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
           G +      R L+ I+++ +G+  P+
Sbjct: 271 GDLPTIV--RRLLVISYEDVGLASPN 294


>gi|320547798|ref|ZP_08042082.1| AAA family ATPase [Streptococcus equinus ATCC 9812]
 gi|320447558|gb|EFW88317.1| AAA family ATPase [Streptococcus equinus ATCC 9812]
          Length = 422

 Score =  132 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 67/325 (20%), Positives = 119/325 (36%), Gaps = 52/325 (16%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            +RP+ +++  GQ       K+     +A    L  ++  GPPG+GKT++A  +A     
Sbjct: 8   RMRPKNIDQVIGQKHLVGEGKIIRRMVEA--NMLSSMILYGPPGIGKTSIASAIAGTTKY 65

Query: 81  NFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137
            FR+ +    +K      A         VL +DEIHRL    ++ L P +E+  + ++  
Sbjct: 66  AFRTFNATTDSKKRLQEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGNIIMIGA 125

Query: 138 VGEGPSARSVKINLSRFT-----LIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
             E P         SR        ++       L   L D+                   
Sbjct: 126 TTENPFFSVTPAIRSRVQIFELDPLSTDDIKSALQTALSDK------------------- 166

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF--AEVAHAKTITREIADAAL 250
           +RG     + +  +A   IA  + G  R A   L        A+    + IT +  + +L
Sbjct: 167 ERGFD-FDVDIDADAIDYIATATNGDLRSAFNSLDLAVMSTKADENGLRHITLDTVENSL 225

Query: 251 LRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            R    +DK G    D+  L+ + ++  G  V              ++       +I+ G
Sbjct: 226 QRSYITMDKDGDGHYDV--LSALQKSIRGSDV------------NASLHYAAR--LIEAG 269

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIPH 333
            +      R L  IA++ +G+  P 
Sbjct: 270 DLP--SLARRLTVIAYEDIGLANPD 292


>gi|260906747|ref|ZP_05915069.1| recombination factor protein RarA [Brevibacterium linens BL2]
          Length = 421

 Score =  132 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 67/329 (20%), Positives = 112/329 (34%), Gaps = 58/329 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP +LE+  GQ     +          R   L  ++  GPPG GKTT+A+++A 
Sbjct: 10  PLADRLRPESLEDVIGQDHLLGDDAPIGRMVAER--RLVSMVLWGPPGCGKTTIARLLAE 67

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
              + F S S        + K    AA    +    +LF+DEIHR +   ++   P +ED
Sbjct: 68  RTNLVFESVSATFSGVAELRKVFQSAAKRREIGQGTMLFVDEIHRFNRAQQDSFLPYVED 127

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             + L+    E PS       LSR  +                           + E L 
Sbjct: 128 GTIVLVGATTENPSFELNSALLSRCQVFVLKR---------------------LDEEALT 166

Query: 190 TIVQRGAK--LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           T++ R  +     L +  +A   +   + G  R    L+ +++  +              
Sbjct: 167 TLITRAEETTERELPLDAQARHALVAMADGDGRYLLNLIEQLQTVS-------------- 212

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVG-IETISAGLSEPRDAIEDLIEPYMIQ 306
                 A+D  G     +  +   A  +     G    ISA     R +  D    ++ +
Sbjct: 213 -----GALDTSGL----VDLVQQRAPIYDKAQEGHYNLISALHKSMRGSDPDASLYWLAR 263

Query: 307 QGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                  P    R L+  A + + I  P 
Sbjct: 264 MLEGGEDPLYIARRLVRFANEDIAIADPQ 292


>gi|257084820|ref|ZP_05579181.1| recombination factor protein RarA [Enterococcus faecalis Fly1]
 gi|256992850|gb|EEU80152.1| recombination factor protein RarA [Enterococcus faecalis Fly1]
          Length = 425

 Score =  132 bits (331), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 68/327 (20%), Positives = 116/327 (35%), Gaps = 49/327 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RPR L+E  GQ       K+     +A+   L  ++  GPPG GKT++A  +A 
Sbjct: 4   PLAYRMRPRHLDEVVGQQHLVGPGKIIRRMVEAK--MLSSMILYGPPGTGKTSIASAIAG 61

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR  +     K    + A    +    +L +DEIHRL    ++ L P +E+ ++ 
Sbjct: 62  STNYAFRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPHLENGRI- 120

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ-- 193
           +M+G       + IN                   ++ R  I       E +  + I +  
Sbjct: 121 IMIGATTENPYITIN-----------------PAIRSRTQIFEVKPLTETDIQQAIHEAL 163

Query: 194 ----RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT--ITREIAD 247
               RG     + + ++A   +   + G  R A   L                IT  I +
Sbjct: 164 TDSTRGLGDYPVHLEEKALQHLTRATNGDLRSALNGLELAVKSTPKNEQGEIKITLPIIE 223

Query: 248 AALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
             + R A   DK G    D      +   F     G +  +A                ++
Sbjct: 224 ECVQRKALTHDKDGDAHYD------VISAFQKSIRGSDVDAALH----------YLGRLV 267

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           + G +      R LM IA++ +G+  P
Sbjct: 268 EAGDLPIIC--RRLMVIAYEDIGLGNP 292


>gi|146298174|ref|YP_001192765.1| recombination factor protein RarA [Flavobacterium johnsoniae UW101]
 gi|146152592|gb|ABQ03446.1| AAA ATPase, central domain protein [Flavobacterium johnsoniae
           UW101]
          Length = 425

 Score =  132 bits (331), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 69/306 (22%), Positives = 117/306 (38%), Gaps = 40/306 (13%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E      +RPRTLE++  Q           +        +  ++F GPPG GKTTLAQ++
Sbjct: 2   EAPLAERIRPRTLEDYISQSHLVGPNGSLTQQISK--GIIPSLIFWGPPGTGKTTLAQII 59

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLED--------RDVLFIDEIHRLSIIVEEILY 126
           A+E    F   S  + +   D+  ++   +           +LFIDEIHR S   ++ L 
Sbjct: 60  AQESKRPFYELSA-INSGVKDIRDVIEKAKQSGGLFTAKNPILFIDEIHRFSKSQQDSLL 118

Query: 127 PAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
            A+E   + L+    E PS   +   LSR       ++V +L    +D           +
Sbjct: 119 AAVEKGWITLIGATTENPSFEVIPALLSR-------SQVYILNAFTKD-----------D 160

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMR-SRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           +E L     +  K            E  +R S G  R    +   V + +  A  + +  
Sbjct: 161 LEALLHRAIKIDKELSSKNITLKETEALLRLSGGDGRKLLNIFELVVNAS--ASDEIVIT 218

Query: 244 EIADAALLRLA---IDKMGFDQLDLRYLTMIARNFGGG-PVGIETISAGLSEPRDAIEDL 299
                AL++      DK G    D   ++   ++  G  P G     A + E  + ++ +
Sbjct: 219 NDRVLALVQQNTVLYDKTGEQHYD--IVSAFIKSIRGSDPNGAVYWLARMIEGGEDVKFI 276

Query: 300 IEPYMI 305
               +I
Sbjct: 277 ARRMLI 282


>gi|281357852|ref|ZP_06244338.1| AAA ATPase central domain protein [Victivallis vadensis ATCC
           BAA-548]
 gi|281315799|gb|EFA99826.1| AAA ATPase central domain protein [Victivallis vadensis ATCC
           BAA-548]
          Length = 455

 Score =  132 bits (331), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 77/326 (23%), Positives = 119/326 (36%), Gaps = 48/326 (14%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           + LRPR+L+E+ GQ    +  K+   A  A  +    V+  GPPG GKT+LA+V+AR   
Sbjct: 31  ARLRPRSLDEYIGQNHLLAPGKLLRRAIDA--DRFSSVILSGPPGTGKTSLAEVIARVSN 88

Query: 80  VNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
             F   SG V +   D+   +            R +LF+DEIHR S   ++ L P +E+ 
Sbjct: 89  SEFVRLSG-VTSSVADVRKEIAQAVTRRRINGRRTILFVDEIHRFSRSQQDSLLPDVENG 147

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
            + L+      P    V   LSR       + V LL    +D     +R    +      
Sbjct: 148 NVRLIGATTHNPQFYVVGALLSR-------SLVFLLQPLTEDDILTLLRRAVADP----- 195

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR-RVRDFAEVAHAKTITREIADAA 249
              R      + +  +AA  IA    G  R +   L   V      A   T        +
Sbjct: 196 ---RSFPGRRVELEPDAAEFIARTCEGDGRRSLNALEIAVLTSDPGADGVTRVTREVAES 252

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
            ++  +   G D                     +T SA +   R +  D    Y+ +   
Sbjct: 253 SVQKKMIVYGDDGH------------------YDTASAFIKSMRGSDADAAIYYLAKMLH 294

Query: 310 IQRTPR--GRLLMPIAWQHLGIDIPH 333
                R   R L+  A + +G   P 
Sbjct: 295 AGEDIRFIARRLVIFAAEDVGNADPR 320


>gi|256959292|ref|ZP_05563463.1| recombination factor protein RarA [Enterococcus faecalis DS5]
 gi|256949788|gb|EEU66420.1| recombination factor protein RarA [Enterococcus faecalis DS5]
 gi|315034534|gb|EFT46466.1| recombination factor protein RarA [Enterococcus faecalis TX0027]
          Length = 425

 Score =  132 bits (331), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 68/327 (20%), Positives = 115/327 (35%), Gaps = 49/327 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RPR L+E  GQ       K+     +A+   L  ++  GPPG GKT++A  +A 
Sbjct: 4   PLAYRMRPRHLDEVVGQQHLVGPGKIIRRMVEAK--MLSSMILYGPPGTGKTSIASAIAG 61

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR  +     K    + A    +    +L +DEIHRL    ++ L P +E+ ++ 
Sbjct: 62  STNYAFRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPHLENGRI- 120

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ-- 193
           +M+G       + IN                   ++ R  I       E +  + I +  
Sbjct: 121 IMIGATTENPYITIN-----------------PAIRSRTQIFEVKPLTETDIQQAIQEAL 163

Query: 194 ----RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT--ITREIAD 247
               RG     + + ++A       + G  R A   L                IT  I +
Sbjct: 164 TDSTRGLGDYPVHLEEKALQHSTRATNGDLRSALNGLELAVKSTPKNEQGEIKITLPIIE 223

Query: 248 AALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
             + R A   DK G    D      +   F     G +  +A                ++
Sbjct: 224 ECVQRKALTHDKDGDAHYD------VISAFQKSIRGSDVDAALH----------YLGRLV 267

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           + G +      R LM IA++ +G+  P
Sbjct: 268 EAGDLPIIC--RRLMVIAYEDIGLGNP 292


>gi|291557549|emb|CBL34666.1| Recombination protein MgsA [Eubacterium siraeum V10Sc8a]
          Length = 416

 Score =  132 bits (331), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 67/329 (20%), Positives = 120/329 (36%), Gaps = 56/329 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP TL+E  GQ    +  K       +R + + +++F GP G+GKTT+A ++A+
Sbjct: 2   PLADRIRPSTLDEVVGQRHILAQGKPLYN-IISRGK-IPNMIFYGPSGVGKTTVANIIAQ 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE-----DRDVLFIDEIHRLSIIVEEILYPAMED 131
           +  ++    +G   A   D+  ++ NL         +LF+DEI  L+   ++ L   +E 
Sbjct: 60  KTSMSLYRLNG-TQASTSDIKDVVANLGTFGAAGGILLFLDEIQYLNKKQQQTLLEYIES 118

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
            ++ L+    E P        LSR T                              ED+ 
Sbjct: 119 GEITLIASTTENPYFYVYSAVLSRCT---------------------VFEFKQVTAEDIL 157

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRG------TPRIAGRLLRRVRDFAEVAHAKTITR 243
             V+R  +L G  +  +   E  + S          R A   +      +E       T 
Sbjct: 158 PAVERAFRLMGEEMHTQFTLEEGVVSHIAYGCGGDVRKAANTVELCCLSSEGDTVTMETA 217

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           ++          D+ G    D   L+ + ++  G            S+   A+       
Sbjct: 218 KLLTQKSSMN-YDRDGDHHYD--ILSGLQKSIRG------------SDENAALHYAAR-- 260

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++  G I  T   R L+ IA + +G+  P
Sbjct: 261 LLAAGDI--TSLCRRLLVIASEDIGLAYP 287


>gi|257422233|ref|ZP_05599223.1| recombination factor protein rarA [Enterococcus faecalis X98]
 gi|257164057|gb|EEU94017.1| recombination factor protein rarA [Enterococcus faecalis X98]
 gi|315157272|gb|EFU01289.1| recombination factor protein RarA [Enterococcus faecalis TX0043]
          Length = 425

 Score =  132 bits (331), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 68/327 (20%), Positives = 116/327 (35%), Gaps = 49/327 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RPR L+E  GQ       K+     +A+   L  ++  GPPG GKT++A  +A 
Sbjct: 4   PLAYRMRPRHLDEVVGQQHLVGPGKIIRRMVEAK--MLSSMILYGPPGTGKTSIASAIAG 61

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR  +     K    + A    +    +L +DEIHRL    ++ L P +E+ ++ 
Sbjct: 62  STNYAFRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPHLENGRI- 120

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ-- 193
           +M+G       + IN                   ++ R  I       E +  + I +  
Sbjct: 121 IMIGATTENPYITIN-----------------PAIRSRTQIFEVKPLTETDIQQAIQEAL 163

Query: 194 ----RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT--ITREIAD 247
               RG     + + ++A   +   + G  R A   L                IT  I +
Sbjct: 164 TDSTRGLGNYPVHLEEKALQHLTRATNGDLRSALNGLELAVKSTPKNEQGEIKITLPIIE 223

Query: 248 AALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
             + R A   DK G    D      +   F     G +  +A                ++
Sbjct: 224 ECVQRKALTHDKDGDAHYD------VISAFQKSIRGSDVDAALH----------YLGRLV 267

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           + G +      R LM IA++ +G+  P
Sbjct: 268 EAGDLPIIC--RRLMVIAYEDIGLGNP 292


>gi|227496185|ref|ZP_03926491.1| crossover junction endodeoxyribonuclease ATPase [Actinomyces
           urogenitalis DSM 15434]
 gi|226834268|gb|EEH66651.1| crossover junction endodeoxyribonuclease ATPase [Actinomyces
           urogenitalis DSM 15434]
          Length = 459

 Score =  132 bits (331), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 81/342 (23%), Positives = 126/342 (36%), Gaps = 69/342 (20%)

Query: 21  LLRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEA---LDHVLFVGPPGLGKTTLAQVV 74
            +RPRTL+E  GQ       S L+  +  A     A   +  V+  GPPG GKTTLA +V
Sbjct: 25  RMRPRTLDELVGQGHLLTAGSPLRRLVCPADDGGVAGAGVSSVILWGPPGTGKTTLAYLV 84

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYP 127
           AR  G  F   S  V A   D+ A++           +  VLF+DE+HR S   ++ L P
Sbjct: 85  ARGSGRRFVELSA-VTAGVKDVRAVVEAARRLLASSGEETVLFVDEVHRFSRSQQDALLP 143

Query: 128 AMEDFQLDLM--VGEGPSARSV-----KINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           ++E+  + LM    E PS   V     +  L     ++A     ++   L D  G+   +
Sbjct: 144 SVENRWVTLMAATTENPSFSVVSPLLSRSLLLTLHPLSAQDVGKVVDRALVDERGLGDAV 203

Query: 181 NFYEIEDLKTIVQRGA----KLTGLAVTDEAA----CEIAMRSRGTPRIAGRLLRRVRDF 232
              E E  + +V+       K   +      A     + A + +  P I    + +  D 
Sbjct: 204 GI-EEEAREQVVRMAGSDARKSLTVLEAAAGAVLSRSQEAGQDQSRPVITLTDVEQAADV 262

Query: 233 AEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEP 292
           A V                    D+ G    D+                   ISA +   
Sbjct: 263 AAVR------------------YDRQGDQHYDV-------------------ISAFIKSM 285

Query: 293 RDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           R +  D    Y+ +       PR   R +   A + +G+  P
Sbjct: 286 RGSDPDATLHYLARMIAAGEDPRYIARRITIHAAEDVGLADP 327


>gi|319400954|gb|EFV89173.1| ATPase family associated with various cellular activities (AAA)
           family protein [Staphylococcus epidermidis FRI909]
          Length = 423

 Score =  132 bits (331), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 65/326 (19%), Positives = 123/326 (37%), Gaps = 43/326 (13%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +   S +RP+ ++E   Q        +       +   L  ++F GPPG+GKT++A+ ++
Sbjct: 4   EPLASRMRPKNIDEIISQQHLVGPKGIIRRMVDTK--RLSSMIFYGPPGIGKTSIAKAIS 61

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
                 FR  +  V     D+  ++   +   + +L +DEIHRL    ++ L P +E+ +
Sbjct: 62  GSTQFKFRQLNA-VTNTKKDMQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGK 120

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + L+      P         SR  +               DR                  
Sbjct: 121 IVLIGATTSNPYHAINPAIRSRAQIFELYPLNQDDIRLALDR--------------AIND 166

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV--AHAKTITREIADAA 249
            +RG       V ++A    + +S+G  R A   L      A +   + + IT + A   
Sbjct: 167 KERGLSTYHPIVDEDAIEYFSTQSQGDVRSALNALELAVLSAHIDEQNERHITLDDAKDC 226

Query: 250 LLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           L + A   DK G    D+  ++   ++  G  V              A+  L    +I+ 
Sbjct: 227 LQKGAFVSDKDGDMHYDV--MSAFQKSIRGSDV------------NAALHYLAR--LIEA 270

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
           G +      R L+ I+++ +G+  P+
Sbjct: 271 GDLPTIV--RRLLVISYEDVGLASPN 294


>gi|78778465|ref|YP_396577.1| recombination factor protein RarA [Prochlorococcus marinus str. MIT
           9312]
 gi|78711964|gb|ABB49141.1| Recombination protein MgsA [Prochlorococcus marinus str. MIT 9312]
          Length = 429

 Score =  132 bits (331), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 65/345 (18%), Positives = 125/345 (36%), Gaps = 45/345 (13%)

Query: 2   MDREGLLS--RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M  E L +    +         LRP+ L++F GQ    +   +   A     + + + +F
Sbjct: 1   MHSENLFTNYSQIESNAPLADKLRPKNLDDFFGQKSILNENSLLRSAIL--NDKISNFIF 58

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFID 112
            GPPG+GKTTL +++A     +       V++   +L   + N ++R        +LFID
Sbjct: 59  SGPPGVGKTTLIEIIAFNT-RSKLIKLNAVLSSIKELRNEIANAKERLINTKRKTILFID 117

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           E+HR + + ++ L P++E+  +  +    E P     K  +SR  +              
Sbjct: 118 EVHRFTSVQQDALLPSIENGTITFIGATTENPFFAVNKALVSRSRIFTL----------- 166

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
                           DLK I+++           +  C          + +G   R + 
Sbjct: 167 ----------IPLSETDLKKIIKKVISYYAKLKEPKKVCLTQDAINHLIKFSGGDARTLI 216

Query: 231 DFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
           +  E+A   T   E  +  +      +    + ++ Y          G    + +SA + 
Sbjct: 217 NALEMAIGTTDENEAEEININLSIA-EDAIQKKNIVY-------DKNGQNHYDIVSAFIK 268

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
             R +  D    ++         P    R L+  A + +GI  P+
Sbjct: 269 SIRGSDPDATLFWLANMLEAGEDPNFIFRRLLISASEDIGIADPN 313


>gi|167749904|ref|ZP_02422031.1| hypothetical protein EUBSIR_00872 [Eubacterium siraeum DSM 15702]
 gi|167657216|gb|EDS01346.1| hypothetical protein EUBSIR_00872 [Eubacterium siraeum DSM 15702]
          Length = 416

 Score =  132 bits (331), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 70/331 (21%), Positives = 124/331 (37%), Gaps = 60/331 (18%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP TL+E  GQ    +  K       +R + + +++F GP G+GKTT+A ++A+
Sbjct: 2   PLADRIRPSTLDEVVGQRHILAQGKPLYN-IISRGK-IPNMIFYGPSGVGKTTVANIIAQ 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE-----DRDVLFIDEIHRLSIIVEEILYPAMED 131
           +  ++    +G   A   D+  ++ NL         +LF+DEI  L+   ++ L   +E 
Sbjct: 60  KTSMSLYRLNG-TQASTSDIKDVVANLGTFGAAGGILLFLDEIQYLNKKQQQTLLEYIES 118

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
            ++ L+    E P        LSR T                              ED+ 
Sbjct: 119 GEITLIASTTENPYFYVYSAVLSRCT---------------------VFEFKQVTAEDIL 157

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRG------TPRIAGRLLRRVRDFAEVAHAKTITR 243
             V+R  +L G  +  +   E  + S          R A   +      +E     T+T 
Sbjct: 158 PAVERAFRLMGEEMHTQFTLEEGVVSHIAYGCGGDVRKAANTVELCCLSSE---DDTVTM 214

Query: 244 EIADAALLR--LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           E A     +  +  D+ G    D   L+ + ++  G            S+   A+     
Sbjct: 215 ETAKLLTQKSSMNYDRDGDHHYD--ILSGLQKSIRG------------SDENAALHYAAR 260

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
             ++  G I  T   R L+ IA + +G+  P
Sbjct: 261 --LLAAGDI--TSLCRRLLVIASEDIGLAYP 287


>gi|329114603|ref|ZP_08243362.1| Replication-associated recombination protein A [Acetobacter pomorum
           DM001]
 gi|326696083|gb|EGE47765.1| Replication-associated recombination protein A [Acetobacter pomorum
           DM001]
          Length = 453

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 63/334 (18%), Positives = 100/334 (29%), Gaps = 52/334 (15%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           +  +        LRP+ LE+  GQ              +    +L  ++  G PG+GKTT
Sbjct: 31  KKPAPTQPLADRLRPQRLEDVVGQAHLLGPEGALTRMLER--GSLASLILWGGPGVGKTT 88

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEE 123
           +A+++A+  G+ F   S  V +   DL     N           +LF+DEIHR +   ++
Sbjct: 89  IARLLAQAAGLKFVQLSA-VFSGVADLKKAFENARRQAEAGGGTLLFVDEIHRFNRAQQD 147

Query: 124 ILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
              P +ED  + L+    E PS       LSR  ++            L  R        
Sbjct: 148 GFLPVVEDGTVVLVGATTENPSFALNSALLSRCQVMVLNRLDDPACEALLVR-------- 199

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
                                     A E   R           LR + D          
Sbjct: 200 --------------------------AEEETGRPLPLTEDGRVTLRAMAD-----GDGRY 228

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
              + +  L       +    L                     ISA     R +  D   
Sbjct: 229 LLNMVEQLLSLKTEKPLDAQALSRLLAKRAILYDRDREEHYNLISALHKSMRGSDPDAAL 288

Query: 302 PYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +  +       PR   R +   A + +G+  PH
Sbjct: 289 YWFARMLEGGEDPRYLARRMTRFAAEDIGMADPH 322


>gi|297195510|ref|ZP_06912908.1| recombination factor protein RarA [Streptomyces pristinaespiralis
           ATCC 25486]
 gi|197722126|gb|EDY66034.1| recombination factor protein RarA [Streptomyces pristinaespiralis
           ATCC 25486]
          Length = 453

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 72/353 (20%), Positives = 115/353 (32%), Gaps = 56/353 (15%)

Query: 2   MDREGLLSRNVSQEDAD------ISLLRPRTLEEFTGQVEACSNLKVFIE-----AAKAR 50
           M+ +   +    +++ D         +RPRTL+E  GQ                 A    
Sbjct: 1   MEPDLFTAAAEERQEKDPTSSPLAVRMRPRTLDEVVGQRHLLKPGSPLRRLVGEGANGGG 60

Query: 51  AEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED----- 105
              +  V+  GPPG GKTTLA VV++     F   S  + A   ++ A++   +      
Sbjct: 61  PAGVSSVILWGPPGTGKTTLAYVVSKATNKRFVELSA-ITAGVKEVRAVIEGAKRAAGGF 119

Query: 106 --RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATT 161
               VLF+DEIHR S   ++ L PA+E+  + L+    E P    +            + 
Sbjct: 120 GKETVLFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYFSVISP--------LLSR 171

Query: 162 RVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRI 221
            + L   PL D     +       E        GA                  +R     
Sbjct: 172 SLLLTLEPLTDDDVRGLLRRALTEERGLG----GAVSLPEDAEAHLLRIAGGDARRALTA 227

Query: 222 AGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVG 281
                    D  E   +     E  D A   +  D+ G    D+   + + ++  G  V 
Sbjct: 228 LEAAAGAALDKGEDGISLVTVEETVDRA--AVKYDRDGDQHYDVA--SALIKSIRGSDV- 282

Query: 282 IETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
                           D    Y+ +       PR   R LM  A + +G+  P
Sbjct: 283 ----------------DAALHYLARMIEAGEDPRFIARRLMISASEDIGLADP 319


>gi|27468227|ref|NP_764864.1| recombination factor protein RarA [Staphylococcus epidermidis ATCC
           12228]
 gi|293366416|ref|ZP_06613094.1| AAA family ATPase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|27315773|gb|AAO04908.1|AE016748_142 conserved hypothetical protein [Staphylococcus epidermidis ATCC
           12228]
 gi|291319450|gb|EFE59818.1| AAA family ATPase [Staphylococcus epidermidis M23864:W2(grey)]
          Length = 426

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 69/332 (20%), Positives = 127/332 (38%), Gaps = 44/332 (13%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           +NVS E    S +RP+ ++E   Q        +       +   L  ++F GPPG+GKT+
Sbjct: 2   KNVSTE-PLASRMRPKNIDEIISQQHLVGPKGIIRRMVDTK--RLSSMIFYGPPGIGKTS 58

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYP 127
           +A+ ++      FR  +  V     D+  ++   +   + +L +DEIHRL    ++ L P
Sbjct: 59  IAKAISGSTQFKFRQLNA-VTNTKKDMQLIVEEAKMSGQVILLLDEIHRLDKAKQDFLLP 117

Query: 128 AMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
            +E+ ++ L+      P         SR  +               DR            
Sbjct: 118 HLENGKIVLIGATTSNPYHAINPAIRSRAQIFELYPLDQDDIRLALDR------------ 165

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV--AHAKTITR 243
                  +RG       V ++A    + +S+G  R A   L      A +   + + IT 
Sbjct: 166 --AINDKERGLSTYHPIVDEDAIEYFSTQSQGDVRSALNALELAVLSAHIGEENERHITL 223

Query: 244 EIADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           + A   L + A   DK G    D+  ++   ++  G  V              A+  L  
Sbjct: 224 DDAKDCLQKGAFVSDKDGDMHYDV--MSAFQKSIRGSDV------------NAALHYLAR 269

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
             +I+ G +      R L+ I+++ +G+  P+
Sbjct: 270 --LIEAGDLPTIV--RRLLVISYEDVGLASPN 297


>gi|229815204|ref|ZP_04445540.1| hypothetical protein COLINT_02250 [Collinsella intestinalis DSM
           13280]
 gi|229809214|gb|EEP44980.1| hypothetical protein COLINT_02250 [Collinsella intestinalis DSM
           13280]
          Length = 441

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 74/348 (21%), Positives = 122/348 (35%), Gaps = 49/348 (14%)

Query: 5   EGLLSRNVS----QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           + L S N      +       +RP TL+++ GQ +A         A +   + L  V+  
Sbjct: 2   DTLFSSNERVKQLKNAPLAVRMRPSTLDDYVGQKKAVGPGSWLRSAIE--HDVLSSVILY 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDE 113
           GP G GKTTLA ++A      F   S  V     DL   +   +        R +LFIDE
Sbjct: 60  GPAGTGKTTLAHIIASHTKSEFVEVSA-VTGTVKDLRREIDEAKHRLMMFDRRTILFIDE 118

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR S   ++ L  A+E+  + ++    E P        LSR  ++              
Sbjct: 119 IHRFSRSQQDALLHAVENRTVVMIGATTENPYFEVNSALLSRSRVVELEHLA-------- 170

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKL-----TGLAVTDEAACEIAMRSRGTPRIAGRLL 226
                         ED++ +V+R            + +DE    I   + G  R +   L
Sbjct: 171 -------------DEDVERLVRRALSAPEGLDGRFSASDEVIRAICTLAAGDGRSSLTTL 217

Query: 227 RRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETIS 286
               + A +          AD+A       +        R L+        G +  + IS
Sbjct: 218 ELASEIA-LTRPGREGEAPADSASPIPIELEDVKQANPRRGLS----YDKSGDMHYDIIS 272

Query: 287 AGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           A +   R +  D    ++ +       P+   R +M  A + +G   P
Sbjct: 273 AFIKSMRGSDPDAAVYWLARMIDAGEDPKFIARRIMIQASEDIGNADP 320


>gi|150866032|ref|XP_001385499.2| DNA-dependent ATPase MGS1 (Maintenance of genome stability protein
           1) DNA-directed DNA polymerase ATPase [Scheffersomyces
           stipitis CBS 6054]
 gi|149387288|gb|ABN67470.2| DNA-dependent ATPase MGS1 (Maintenance of genome stability protein
           1) DNA-directed DNA polymerase ATPase [Scheffersomyces
           stipitis CBS 6054]
          Length = 747

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 75/333 (22%), Positives = 127/333 (38%), Gaps = 39/333 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP++L++F GQ +      +      A  + +   +  G PG+GKT+LA+++A 
Sbjct: 179 PLAHRLRPKSLDDFFGQEKLLGQDGILRNIINA--DNIPSFILWGVPGVGKTSLARIIAH 236

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAM 129
                F   SG   + A  L  +    E        + +LF+DEIHR +  V+++L P +
Sbjct: 237 TTNCKFVELSGAE-SNAKRLKEVFLQAENEKHLTGRKTILFLDEIHRFNKAVQDLLLPVI 295

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E   L ++    E PS       LSR   +       L T  L       +    Y++  
Sbjct: 296 EKGVLTVIGATTENPSFTLNNALLSR---MHTFVMEQLTTAALIK----ILARALYQVNK 348

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           L+  +     L  +++  ++   IA  S G  R+A  LL  V  +       T   E   
Sbjct: 349 LRKHL---YNLHYISLKRDSFKYIAELSMGDSRVALNLLEFVNAYLSTDKFSTKNGEEQP 405

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIAR-------NFGGGPVGIETISAGLSEPRDAIEDLI 300
                    KMG   +    L  I +           G    +TISA     R +  D  
Sbjct: 406 K--------KMGVINVSAESLKSILKSRDFHNMYDKQGESHYDTISAFHKSVRGSDADAA 457

Query: 301 EPYMIQQGFIQRTPRG--RLLMPIAWQHLGIDI 331
             Y+++       P    R ++ +A + +G+  
Sbjct: 458 MFYLVKMLSGGEDPLFIIRRMIVMASEDIGLRD 490


>gi|150390210|ref|YP_001320259.1| recombination factor protein RarA [Alkaliphilus metalliredigens
           QYMF]
 gi|149950072|gb|ABR48600.1| AAA ATPase, central domain protein [Alkaliphilus metalliredigens
           QYMF]
          Length = 422

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 71/329 (21%), Positives = 127/329 (38%), Gaps = 51/329 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP  LE+  GQ    S  ++  +  +A    + +++F GPPG+GKTT+A +++ 
Sbjct: 4   PLADRMRPIKLEDVVGQEHILSKNQILNKTLQAGH--ITNMIFYGPPGVGKTTVANIISN 61

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE-----DRDVLFIDEIHRLSIIVEEILYPAMED 131
                    +    A   D+  ++  L+     +  +L++DEI   +   ++ L   +E+
Sbjct: 62  MTNKKLYKLNA-TNASIKDIQRIVAELDSFMTMNGVLLYLDEIQNFNKKQQQSLLEYIEN 120

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
            ++ L+    E P        LSR T+                 F   +      IE LK
Sbjct: 121 GKITLIASTTENPYHYIYNAILSRSTV-----------------FEFKLLTKSNVIEGLK 163

Query: 190 TIVQRG--AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK----TITR 243
            +++R      T +   +EA   IA  S G  R A   L      AE  + +    TI  
Sbjct: 164 QVIKRINDEGKTLVEYEEEALDYIATASNGDLRRAMNALELAMYAAESENKEQVFLTIHI 223

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
                    ++ DK G    D   L+   ++  G            ++P  AI  L    
Sbjct: 224 AQESTQKKVISYDKFGDQHYD--ILSAFQKSIRG------------TDPDAAIHYLAR-- 267

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           +++ G +      R L+ IA + +G+  P
Sbjct: 268 LVKAGDLNSIC--RRLLVIASEDIGLAYP 294


>gi|291530943|emb|CBK96528.1| Recombination protein MgsA [Eubacterium siraeum 70/3]
          Length = 416

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 67/329 (20%), Positives = 120/329 (36%), Gaps = 56/329 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP TL+E  GQ    +  K       +R + + +++F GP G+GKTT+A ++A+
Sbjct: 2   PLADRIRPSTLDEVVGQRHILAQGKPLYN-IISRGK-IPNMIFYGPSGVGKTTVANIIAQ 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE-----DRDVLFIDEIHRLSIIVEEILYPAMED 131
           +  ++    +G   A   D+  ++ NL         +LF+DEI  L+   ++ L   +E 
Sbjct: 60  KTSMSLYRLNG-TQASTSDIKDVVANLGTFGAAGGILLFLDEIQYLNKKQQQTLLEYIES 118

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
            ++ L+    E P        LSR T                              ED+ 
Sbjct: 119 GEITLIASTTENPYFYVYSAVLSRCT---------------------VFEFKQVTAEDIL 157

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRG------TPRIAGRLLRRVRDFAEVAHAKTITR 243
             V+R  +L G  +  +   E  + S          R A   +      +E       T 
Sbjct: 158 PAVERAFRLMGEEMHTQFTLEEGVVSHIAYGCGGDVRKAANTVELCCLSSEGDTVTMETA 217

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           ++          D+ G    D   L+ + ++  G            S+   A+       
Sbjct: 218 KLLTQKSSMN-YDRDGDHHYD--ILSGLQKSIRG------------SDENAALHYAAR-- 260

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++  G I  T   R L+ IA + +G+  P
Sbjct: 261 LLAAGDI--TSLCRRLLVIASEDIGLAYP 287


>gi|302866794|ref|YP_003835431.1| AAA ATPase central domain-containing protein [Micromonospora
           aurantiaca ATCC 27029]
 gi|302569653|gb|ADL45855.1| AAA ATPase central domain protein [Micromonospora aurantiaca ATCC
           27029]
          Length = 532

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 76/328 (23%), Positives = 118/328 (35%), Gaps = 57/328 (17%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            +RP  ++E  GQ    +      +  +    A   V+  GPPG GKTT+A +VAR    
Sbjct: 73  RMRPAGIDELVGQEHLLAPGAPLRQLVE--GAAPMSVILWGPPGSGKTTIAHLVARATDR 130

Query: 81  NFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMEDFQ 133
            F + S  + A   D+ A++     +        VLFIDE+HR S   ++ L  A+ED  
Sbjct: 131 RFVAMSA-LTAGVKDVRAVIETARRQRRSGGPPTVLFIDEVHRFSKTQQDSLLAAVEDRT 189

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTR-----VGLLTNPLQDRFGIPIRLNFYEIE 186
           + L+    E P    +   LSR  L+           GLL   + D  G+   L   E E
Sbjct: 190 VTLLAATTENPYFSVISPLLSRCVLLTLQALDDDDVRGLLRRAVADERGLGGALVLAE-E 248

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
               +V+        A+T   A      + GT RI   +  +  D A V           
Sbjct: 249 AEDHLVRLAGGDVRKALTALEAAAATATALGTGRIDLAVAEQAVDVAAVR---------- 298

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
                    D+ G    D+                    SA +   R +  D    ++ +
Sbjct: 299 --------YDRDGDAHYDV-------------------TSAFIKSMRGSDVDAALHWLAR 331

Query: 307 QGFIQRTPR--GRLLMPIAWQHLGIDIP 332
                   R   R L+  A + +G+  P
Sbjct: 332 MVVAGEDARFIARRLVIFASEDVGMADP 359


>gi|296270023|ref|YP_003652655.1| AAA ATPase central domain-containing protein [Thermobispora bispora
           DSM 43833]
 gi|296092810|gb|ADG88762.1| AAA ATPase central domain protein [Thermobispora bispora DSM 43833]
          Length = 436

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 70/333 (21%), Positives = 122/333 (36%), Gaps = 62/333 (18%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +     +RPRTL+E  GQ              +  ++A   ++  GPPG GKTTLA VV+
Sbjct: 18  EPLAVRMRPRTLDEVVGQRHLLGPDTPLRRLVE--SDAPMSLILWGPPGTGKTTLAYVVS 75

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPA 128
                 F   S  V A   ++ A +            + VLF+DE+HR +   ++ L PA
Sbjct: 76  NTTARRFVEISA-VSAGVKEVRAAIEQARRELGMTGRQTVLFVDEVHRFNKAQQDALLPA 134

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           +E+  +  +    E P    V            +  + L   PL D             +
Sbjct: 135 VENRWVTFIGATTENPFFSVV--------SPLLSRSLLLTLEPLSD-------------D 173

Query: 187 DLKTIVQRGAKLT-----GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +++T+++R           + +  EA  ++   + G  R +   L      AE      +
Sbjct: 174 EIRTVLERAVADERGLAGRVTLRPEALEQLIRLAGGDARRSLTYLEAAALLAEDITVDVV 233

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
            R +  AA   +  D+ G    D+                   +SA +   R +  D   
Sbjct: 234 ERAVDKAA---VRYDRQGDQHYDV-------------------VSAFIKSMRGSDVDAAL 271

Query: 302 PYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
            Y+ +       PR   R ++  A + +G+  P
Sbjct: 272 HYLARMIEAGEDPRFIARRIVIFASEDVGMADP 304


>gi|229549682|ref|ZP_04438407.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis
           ATCC 29200]
 gi|255972380|ref|ZP_05422966.1| recombination factor protein RarA [Enterococcus faecalis T1]
 gi|300861178|ref|ZP_07107265.1| recombination factor protein RarA [Enterococcus faecalis TUSoD
           Ef11]
 gi|312951281|ref|ZP_07770182.1| recombination factor protein RarA [Enterococcus faecalis TX0102]
 gi|229305162|gb|EEN71158.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis
           ATCC 29200]
 gi|255963398|gb|EET95874.1| recombination factor protein RarA [Enterococcus faecalis T1]
 gi|300850217|gb|EFK77967.1| recombination factor protein RarA [Enterococcus faecalis TUSoD
           Ef11]
 gi|310630717|gb|EFQ14000.1| recombination factor protein RarA [Enterococcus faecalis TX0102]
 gi|315152587|gb|EFT96603.1| recombination factor protein RarA [Enterococcus faecalis TX0031]
 gi|315159893|gb|EFU03910.1| recombination factor protein RarA [Enterococcus faecalis TX0312]
          Length = 425

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 68/327 (20%), Positives = 115/327 (35%), Gaps = 49/327 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RPR L+E  GQ       K+     +A+   L  ++  GPPG GKT++A  +A 
Sbjct: 4   PLAYRMRPRHLDEVVGQQHLVGPGKIIRRMVEAK--MLSSMILYGPPGTGKTSIASAIAG 61

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR  +     K    + A    +    +L +DEIHRL    ++ L P +E+ ++ 
Sbjct: 62  STNYAFRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPHLENGRI- 120

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ-- 193
           +M+G       + IN                   ++ R  I       E +  + I +  
Sbjct: 121 IMIGATTENPYITIN-----------------PAIRSRTQIFEVKPLTETDIQQAIQEAL 163

Query: 194 ----RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT--ITREIAD 247
               RG     + + ++A       + G  R A   L                IT  I +
Sbjct: 164 TDSTRGLGDYPVHLEEKALQHSTRATNGDLRSALNGLELAVKSTPKNEQGEIKITLPIIE 223

Query: 248 AALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
             + R A   DK G    D      +   F     G +  +A                ++
Sbjct: 224 ECVQRKALTHDKDGDAHYD------VISAFQKSIRGSDVDAALH----------YLGRLV 267

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           + G +      R LM IA++ +G+  P
Sbjct: 268 EAGDLPIIC--RRLMVIAYEDIGLGNP 292


>gi|257890950|ref|ZP_05670603.1| recombination factor protein RarA [Enterococcus faecium 1,231,410]
 gi|257827310|gb|EEV53936.1| recombination factor protein RarA [Enterococcus faecium 1,231,410]
          Length = 342

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 67/323 (20%), Positives = 114/323 (35%), Gaps = 41/323 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RPRT++E  GQ       K+      AR   L  ++  GPPG GKT++A  +A 
Sbjct: 4   PLAYRMRPRTIDEVVGQQHLVGEGKIIRRMVDAR--MLSSMILYGPPGTGKTSIASAIAG 61

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR  +    +K    + A    +    +L +DE+HRL    ++ L P +E  ++ 
Sbjct: 62  STNYAFRMLNAATDSKKDLQVVAEEAKMSGTVILLLDEVHRLDKTKQDFLLPHLESGRII 121

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           L+    E P         SR  +            PL +      +     +E      +
Sbjct: 122 LIGATTENPYITINPAIRSRTQIFEV--------KPLTE------QDIQLAVEHALRDKE 167

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI--TREIADAALL 251
           RG     + + ++A   ++  + G  R A   L              I  T  I +  + 
Sbjct: 168 RGLGQQAIQLDEDALLHLSRATNGDLRSALNGLELATLSTPSDKEGRIHLTLSIIEECVQ 227

Query: 252 RLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           R A   DK G    D      +   F     G +  +A                +++ G 
Sbjct: 228 RKALTHDKNGDAHYD------VISAFQKSIRGSDVDAALH----------YLARLVEAGD 271

Query: 310 IQRTPRGRLLMPIAWQHLGIDIP 332
           +      R LM I ++ +G+  P
Sbjct: 272 LASIC--RRLMVIGYEDIGLGNP 292


>gi|150020062|ref|YP_001305416.1| recombination factor protein RarA [Thermosipho melanesiensis BI429]
 gi|149792583|gb|ABR30031.1| AAA ATPase, central domain protein [Thermosipho melanesiensis
           BI429]
          Length = 410

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 66/322 (20%), Positives = 117/322 (36%), Gaps = 52/322 (16%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
            +LRP+  EEF GQ       K  I  A      L   +F GPPG GKT+  +++ ++  
Sbjct: 6   EILRPKGFEEFIGQEHLFGE-KGLIRLAIESGN-LFSAVFYGPPGCGKTSTLEIIRKKTD 63

Query: 80  VNFRSTSGPVIA-----KAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
                 +  V +     K  D A  +  L+ + ++F+DEIHR +   ++I  P +E    
Sbjct: 64  FEIYHFNAAVTSTIDVKKVLDYAQKVKGLK-KMLIFVDEIHRFNKKQQDIFLPGIERGDY 122

Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
             +    E P        LSR  +IA                            ++K ++
Sbjct: 123 IFIGATTENPFKMINPALLSRIKVIAFKKLKVF---------------------EIKKLL 161

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           +R   +  + V +     I   S G  R A  +   + D A+    + +  EI       
Sbjct: 162 ERAISVKNIDVMESVMDFITRISDGDARFAINIYDVLSDMAKALGKEIVDDEIVT----- 216

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
                      +++ +     ++      I++I       R +  D    YM +   +  
Sbjct: 217 -------LYGGEVKMVYTSKEHYELASAFIKSI-------RGSDPDAALYYMARMLEVGE 262

Query: 313 TPR--GRLLMPIAWQHLGIDIP 332
            PR   R L  +A + +G+  P
Sbjct: 263 DPRFIARRLAILASEDVGLADP 284


>gi|320534364|ref|ZP_08034850.1| recombination factor protein RarA [Actinomyces sp. oral taxon 171
           str. F0337]
 gi|320133406|gb|EFW25868.1| recombination factor protein RarA [Actinomyces sp. oral taxon 171
           str. F0337]
          Length = 468

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 86/341 (25%), Positives = 132/341 (38%), Gaps = 58/341 (17%)

Query: 21  LLRPRTLEEFTGQVEAC---SNLKVFIE----------------AAKARAEALDHVLFVG 61
            +RPRTL+E  GQ       S L+  +E                A ++   +L  V+  G
Sbjct: 25  RMRPRTLDELEGQAHLLTPGSPLRRLVEPAEADKSSHAGEQGSGAVRSAGSSLSSVILWG 84

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIH 115
           PPG GKTTLA +VAR  G  F   S  V A   D+ A++T+   R       VLFIDE+H
Sbjct: 85  PPGTGKTTLAYLVARGSGRRFVELSA-VTAGVKDVRAVVTDARRRLAAGEETVLFIDEVH 143

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R S   ++ L P++E+  + L+    E PS   V   LSR  L+            L DR
Sbjct: 144 RFSRSQQDALLPSVENRWVTLIAATTENPSFSVVSPLLSRSLLLTLHPLQADDIGRLVDR 203

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                              +RG     + ++DEA  +I   +    R A  +L       
Sbjct: 204 ---------------ALDDERGLAG-TVGISDEARGQIVRMAGSDARKALTVLEAAAGTV 247

Query: 234 EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
               + + T  + + A +  A D     + D             G    + +SA +   R
Sbjct: 248 LAQASGSGTSPLIEVADVERAADVAAG-RYDRA-----------GDQHYDVVSAFIKSMR 295

Query: 294 DAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
            +  D    Y+ +       PR   R ++  A + +G+  P
Sbjct: 296 GSDPDATMHYLARMIAAGEDPRYIARRIVIHAAEDVGLADP 336


>gi|31793742|ref|NP_856235.1| recombination factor protein RarA [Mycobacterium bovis AF2122/97]
 gi|121638444|ref|YP_978668.1| recombination factor protein RarA [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|215427955|ref|ZP_03425874.1| recombination factor protein RarA [Mycobacterium tuberculosis T92]
 gi|215431517|ref|ZP_03429436.1| recombination factor protein RarA [Mycobacterium tuberculosis
           EAS054]
 gi|219558563|ref|ZP_03537639.1| recombination factor protein RarA [Mycobacterium tuberculosis T17]
 gi|224990938|ref|YP_002645625.1| recombination factor protein [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|260187574|ref|ZP_05765048.1| recombination factor protein RarA [Mycobacterium tuberculosis
           CPHL_A]
 gi|260201686|ref|ZP_05769177.1| recombination factor protein RarA [Mycobacterium tuberculosis T46]
 gi|260205881|ref|ZP_05773372.1| recombination factor protein RarA [Mycobacterium tuberculosis K85]
 gi|289444095|ref|ZP_06433839.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis T46]
 gi|289448208|ref|ZP_06437952.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis CPHL_A]
 gi|289570728|ref|ZP_06450955.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis T17]
 gi|289575267|ref|ZP_06455494.1| recombination factor protein RarA [Mycobacterium tuberculosis K85]
 gi|289751178|ref|ZP_06510556.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis T92]
 gi|289754677|ref|ZP_06514055.1| recombination factor protein RarA [Mycobacterium tuberculosis
           EAS054]
 gi|31619336|emb|CAD94774.1| CONSERVED HYPOTHETICAL ALANINE LEUCINE VALINE RICH PROTEIN
           [Mycobacterium bovis AF2122/97]
 gi|121494092|emb|CAL72570.1| Conserved hypothetical alanine leucine valine rich protein
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|224774051|dbj|BAH26857.1| recombination factor protein [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|289417014|gb|EFD14254.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis T46]
 gi|289421166|gb|EFD18367.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis CPHL_A]
 gi|289539698|gb|EFD44276.1| recombination factor protein RarA [Mycobacterium tuberculosis K85]
 gi|289544482|gb|EFD48130.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis T17]
 gi|289691765|gb|EFD59194.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis T92]
 gi|289695264|gb|EFD62693.1| recombination factor protein RarA [Mycobacterium tuberculosis
           EAS054]
          Length = 452

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 75/322 (23%), Positives = 122/322 (37%), Gaps = 47/322 (14%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            +RP +L+E  GQ    +         +    A   V+  GPPG GKTTLA ++++  G 
Sbjct: 34  RMRPASLDEVVGQDHLLAPGSPLRRLVEGSGVA--SVILYGPPGSGKTTLAALISQATGR 91

Query: 81  NFRSTSGPVIAKAGDLAALLTN------LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
            F + S  + A   ++ A++ N        ++ VLFIDE+HR S   ++ L  A+E   +
Sbjct: 92  RFEALSA-LSAGVKEVRAVIENSRKALLHGEQTVLFIDEVHRFSKTQQDALLSAVEHRVV 150

Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            L+    E PS   V   LSR                      + ++L     ED + +V
Sbjct: 151 LLVAATTENPSFSVVAPLLSR---------------------SLILQLRPLTAEDTRAVV 189

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           QR   +        A            ++A    RR    A  A         A   L+ 
Sbjct: 190 QRA--IDDPRGLGRAVAVAPEAVDLLVQLAAGDARR----ALTALEVAAEAAQAAGELVS 243

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           +   +   D+  +RY          G    + +SA +   R +  D    Y+ +      
Sbjct: 244 VQTIERSVDKAAVRY-------DRDGDQHYDVVSAFIKSVRGSDVDAALHYLARMLVAGE 296

Query: 313 TPR--GRLLMPIAWQHLGIDIP 332
            PR   R LM +A + +G+  P
Sbjct: 297 DPRFIARRLMILASEDIGMADP 318


>gi|213022655|ref|ZP_03337102.1| Holliday junction DNA helicase B [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 114

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 65/114 (57%), Positives = 85/114 (74%), Gaps = 1/114 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S   +  ED     +RP+ L E+ GQ +  S +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRLISAGATIAEDVADRAIRPKLLAEYVGQPQVRSQMEIFIQAAKRRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDE 113
            GPPGLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDE
Sbjct: 61  FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE 114


>gi|256832588|ref|YP_003161315.1| AAA ATPase central domain-containing protein [Jonesia denitrificans
           DSM 20603]
 gi|256686119|gb|ACV09012.1| AAA ATPase central domain protein [Jonesia denitrificans DSM 20603]
          Length = 464

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 80/338 (23%), Positives = 126/338 (37%), Gaps = 42/338 (12%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALD-HVLFVGPPGL 65
              S        +RPRT+EE TGQ       S L+  ++ +     A+   V+  GPPG 
Sbjct: 15  PEPSPTAPLAVRMRPRTVEEVTGQTHLLQPGSPLRRLLDTSGEYQRAMPGSVMLWGPPGT 74

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLS 118
           GKTTLA ++A   G  F   S  V A   D+ A++ +   R        VLFIDE+HR S
Sbjct: 75  GKTTLAYLIALNSGRFFVELSA-VTAGVKDVRAVIDDARRRLTSGGQETVLFIDEVHRFS 133

Query: 119 IIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
              ++ L P++E+  + L+    E PS   +            +  + L   PL D    
Sbjct: 134 KSQQDALLPSVENRWITLVAATTENPSFSVI--------SPLLSRSLLLTLKPLDD---- 181

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
                    +D+  +V R   LT            A       R+AG   R+     E A
Sbjct: 182 ---------DDIAGLVDRA--LTDSRGLAGEVLIDAEAKLHLLRLAGGDARKALTILEAA 230

Query: 237 HAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAI 296
               + R  +     +  +D      ++        R    G    + ISA +   R + 
Sbjct: 231 AGAALDRHRSQEHSSQARVD---LTTMEQAIDVAAVRYDKDGDQHYDVISAFIKSMRGSD 287

Query: 297 EDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
                 Y+ +       PR   R ++  A + +G+  P
Sbjct: 288 VQAALHYLARMIVAGEDPRFIARRIVISASEDVGMADP 325


>gi|167627500|ref|YP_001678000.1| recombination factor protein RarA [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167597501|gb|ABZ87499.1| AAA family-ATPase [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
          Length = 411

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 66/323 (20%), Positives = 119/323 (36%), Gaps = 41/323 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + LRP+++EE  GQ    S      +      + +  ++  G PG+GKTTLA+++A 
Sbjct: 5   PLAARLRPQSIEEVIGQEHILSKNGSLTK--ILAGDGICSLILCGKPGVGKTTLAKIIAS 62

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
              + F   S  V +   D+  L+ + +     VLF+DEIHR +   +++L P +E  ++
Sbjct: 63  SKQLEFFELSA-VDSGVKDVKKLIADNQHLGSFVLFLDEIHRFNKSQQDLLLPYVESGKI 121

Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            L+    E P+       +SR  ++         T  L  R            ++L    
Sbjct: 122 ILIGATTENPTYYLNNALVSRVFILRLKRLNISETRKLIQR--------AITKDEL---- 169

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
                     + D+    I   S G  R    LL R+   ++  +   + +++ D A+  
Sbjct: 170 ---LAKHSFEIDDDLYNAIHNYSEGDCRKILNLLERMFLISDRTNTIHLDKDLFDQAVGE 226

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
            + D                     G    E +SA     R    D    ++        
Sbjct: 227 ASRD-----------------FHREGKEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGA 269

Query: 313 TPR--GRLLMPIAWQHLGIDIPH 333
            P    R ++ IA + +G   P 
Sbjct: 270 DPLVIARRMLCIASEDIGNADPQ 292


>gi|330683925|gb|EGG95693.1| recombination factor protein RarA [Staphylococcus epidermidis
           VCU121]
          Length = 423

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 72/323 (22%), Positives = 130/323 (40%), Gaps = 38/323 (11%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +   S +RP  ++E   Q        +     + +   L  ++F GPPG+GKT++A+ +A
Sbjct: 4   EPLASRMRPINIDEIISQQHLVGPKGIIRRMVETK--RLSSMIFYGPPGIGKTSIAKAIA 61

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
                 FR  +  V     D+  ++   +   + +L +DEIHRL    ++ L P +E+ +
Sbjct: 62  GSTQYKFRQLNA-VTNTKKDMQMVVDEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGK 120

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           + +++G   S     IN       A  +R  +      D   I + LN            
Sbjct: 121 I-VLIGATTSNPYHAIN------PAIRSRAQIFELFPLDNDDIRLALN-----RALEDED 168

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR-RVRDFAEVAHAKTITREIADAALLR 252
           RG       V D+A    + +S+G  R A   L   V   +E    + IT + A   L +
Sbjct: 169 RGLNAYSPKVDDDAMTYFSTQSQGDVRSALNALELAVLSASEEDGQRHITLQDAKDCLQK 228

Query: 253 LAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
            A   DK G    D+  ++   ++  G  V              A+  L    +I+ G +
Sbjct: 229 GAFVSDKDGDMHYDV--MSAFQKSIRGSDV------------NAALHYLAR--LIEAGDL 272

Query: 311 QRTPRGRLLMPIAWQHLGIDIPH 333
                 R L+ I+++ +G+  P+
Sbjct: 273 PTIV--RRLLVISYEDVGLASPN 293


>gi|332358379|gb|EGJ36204.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
           SK49]
          Length = 422

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 66/326 (20%), Positives = 121/326 (37%), Gaps = 42/326 (12%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            +     +RP  +++  GQ     + K+     +A    L  ++  GPPG+GKT++A  +
Sbjct: 2   PENLALRMRPTDIDQIIGQQHLVGSGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           A      FR+ +  V +K      A         VL +DEIHRL    ++ L P +E   
Sbjct: 60  AGTTKFAFRTFNATVDSKKRLQEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGL 119

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + ++    E P         SR  +            PL +             +     
Sbjct: 120 VIMIGATTENPFFSVTPAIRSRVQIFEL--------EPLSNEDIRTAIQLALTDK----- 166

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA--EVAHAKTITREIADAA 249
            +RG     + + DEA   IA+ + G  R A   L         +    + IT ++ + +
Sbjct: 167 -ERGFD-FPVELDDEALDFIAISTNGDLRSAYNSLDLAVLSTPEDSKGIRHITLDVMENS 224

Query: 250 LLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           L +    +DK G    D+  L+ + ++  G  V              ++       +++ 
Sbjct: 225 LQKSYITMDKDGDGHYDV--LSALQKSIRGSDV------------NASLHYAAR--LVEA 268

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
             +  T   R L  IA++ +G+  P 
Sbjct: 269 EDL--TSLARRLTVIAYEDIGLANPD 292


>gi|295113243|emb|CBL31880.1| Recombination protein MgsA [Enterococcus sp. 7L76]
 gi|315161375|gb|EFU05392.1| recombination factor protein RarA [Enterococcus faecalis TX0645]
 gi|323481114|gb|ADX80553.1| recombination factor protein RarA [Enterococcus faecalis 62]
          Length = 425

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 68/327 (20%), Positives = 116/327 (35%), Gaps = 49/327 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RPR L+E  GQ       K+     +A+   L  ++  GPPG GKT++A  +A 
Sbjct: 4   PLAYRMRPRHLDEVVGQQHLVGPGKIIRRMVEAK--MLSSMILYGPPGTGKTSIASAIAG 61

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR  +     K    + A    +    +L +DEIHRL    ++ L P +E+ ++ 
Sbjct: 62  STNYAFRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPHLENGRI- 120

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ-- 193
           +M+G       + IN                   ++ R  I       E +  + I +  
Sbjct: 121 IMIGATTENPYITIN-----------------PAIRSRTQIFEVKPLTETDIQQAIQEAL 163

Query: 194 ----RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT--ITREIAD 247
               RG     + + ++A   +   + G  R A   L                IT  I +
Sbjct: 164 TDSTRGLGDYPVHLEEKALQHLTRATNGDLRSALNGLELAVKSTPKNEQGEIKITLPIIE 223

Query: 248 AALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
             + R A   DK G    D      +   F     G +  +A                ++
Sbjct: 224 ECVQRKALTHDKDGDAHYD------VISAFQKSIRGSDVDAALH----------YLGRLV 267

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           + G +      R LM IA++ +G+  P
Sbjct: 268 EAGDLPIIC--RRLMVIAYEDIGLGNP 292


>gi|227877291|ref|ZP_03995364.1| crossover junction endodeoxyribonuclease [Lactobacillus crispatus
           JV-V01]
 gi|256842853|ref|ZP_05548341.1| recombination factor protein RarA [Lactobacillus crispatus
           125-2-CHN]
 gi|256848783|ref|ZP_05554217.1| recombination factor protein RarA [Lactobacillus crispatus
           MV-1A-US]
 gi|262045819|ref|ZP_06018783.1| recombination factor protein RarA [Lactobacillus crispatus
           MV-3A-US]
 gi|293381688|ref|ZP_06627669.1| recombination factor protein RarA [Lactobacillus crispatus 214-1]
 gi|227863147|gb|EEJ70593.1| crossover junction endodeoxyribonuclease [Lactobacillus crispatus
           JV-V01]
 gi|256614273|gb|EEU19474.1| recombination factor protein RarA [Lactobacillus crispatus
           125-2-CHN]
 gi|256714322|gb|EEU29309.1| recombination factor protein RarA [Lactobacillus crispatus
           MV-1A-US]
 gi|260573778|gb|EEX30334.1| recombination factor protein RarA [Lactobacillus crispatus
           MV-3A-US]
 gi|290921735|gb|EFD98756.1| recombination factor protein RarA [Lactobacillus crispatus 214-1]
          Length = 435

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 67/330 (20%), Positives = 109/330 (33%), Gaps = 47/330 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP  L+E  GQ       K+     +AR   L  ++  GPPG+GKT++A  +A 
Sbjct: 3   PLAYRMRPTNLDEVVGQRHLIGPGKIIRRMVEAR--LLSSMILYGPPGIGKTSIASAIAG 60

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR  +     K      A    +    VL +DEIHRL    ++ L P +E  Q+ 
Sbjct: 61  STKYAFRKLNAATDGKKQLQQVAEEGKMSGTVVLLLDEIHRLDKTKQDFLLPLLESGQII 120

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           L+    E P         SR  +           +   DR                   +
Sbjct: 121 LIGATTENPYISISPAIRSRCQIFELKPLSTDDASHAIDR--------------ALNDKE 166

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR--------DFAEVAHAKTITREI 245
           +G     + +TD+A   +  +  G  R     L            D  +      IT++ 
Sbjct: 167 KGLGKYNVELTDDARALLIEKGNGDLRSTLNSLELAVLSTKQELQDKHQDDQKIIITQKE 226

Query: 246 ADAALLR--LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
              ++       D  G    D      +   F     G +T +A                
Sbjct: 227 MADSIQMKVQNFDASGDGHYD------LVSAFQKSIRGSDTDAALH----------YLAR 270

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +I+ G +      R L  IA++ +G+  P 
Sbjct: 271 LIESGDLVSIC--RRLAVIAYEDIGLADPD 298


>gi|301066249|ref|YP_003788272.1| helicase subunit of the Holliday junction resolvase-like ATPase
           [Lactobacillus casei str. Zhang]
 gi|300438656|gb|ADK18422.1| Helicase subunit of the Holliday junction resolvase related ATPase
           [Lactobacillus casei str. Zhang]
          Length = 431

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 65/323 (20%), Positives = 107/323 (33%), Gaps = 41/323 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+ L+E  GQ +     ++      A    L  ++  GPPG GKT++A  +A 
Sbjct: 4   PLAYRMRPQNLDEVVGQQDLVGPDRIIRRMVSAH--RLSSMILYGPPGTGKTSIASAIAG 61

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR  +     K    + A    +    +L +DEIHRL    ++ L P +E  ++ 
Sbjct: 62  STKYAFRILNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPLLESGRIV 121

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           L+    E P         SR  +                R                   +
Sbjct: 122 LIGATTENPYMNIQPAIRSRTQIFQVKPLTPDDITSAIKR--------------ALADHK 167

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE--IADAALL 251
           RG     + +  +A   +   + G  R A   L         +   TIT +      +L 
Sbjct: 168 RGLGDYQVDLQPDALDYLTHATNGDLRSALNGLELAVLSTPASDDGTITIDLTTIQQSLQ 227

Query: 252 R--LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           +  LA D  G    D      I   F     G +  +A                +I  G 
Sbjct: 228 KPALAGDTNGDAHYD------IISAFQKSIRGSDADAALH----------YLARLIAIGD 271

Query: 310 IQRTPRGRLLMPIAWQHLGIDIP 332
           +      R L+ IA++ +G+  P
Sbjct: 272 LNSIT--RRLLVIAYEDIGLANP 292


>gi|315658102|ref|ZP_07910974.1| AAA family ATPase [Staphylococcus lugdunensis M23590]
 gi|315496431|gb|EFU84754.1| AAA family ATPase [Staphylococcus lugdunensis M23590]
          Length = 422

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 65/325 (20%), Positives = 123/325 (37%), Gaps = 42/325 (12%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            +   S +RP+ ++E   Q        +     + +   L  ++F GPPG+GKT++A+ +
Sbjct: 3   NEPLASRMRPKNIDEIISQQHLVGPRGIIRRMVETK--RLSSMIFYGPPGIGKTSIAKAI 60

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           +      FR  +  V     D+  ++   +   + +L +DEIHRL    ++ L P +E+ 
Sbjct: 61  SGSTAYKFRQLNA-VTNTKKDMQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENG 119

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           ++ L+      P         SR  +            PL +       +   E +    
Sbjct: 120 KIVLIGATTSNPYHAINPAIRSRAQIFELY--------PLNEEDIKVALMRAIEDDS--- 168

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR-RVRDFAEVAHAKTITREIADAA 249
              RG       + ++A    + +S+G  R A   L   V    E    + +T   A   
Sbjct: 169 ---RGLASYHPHIDEDAIEYFSTQSQGDVRSALNALELAVLSADEDNGERHVTLTDAQDC 225

Query: 250 LLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           L + A   DK G    D+  ++   ++  G  V              A+  L    +I  
Sbjct: 226 LQKGAFVSDKDGDMHYDV--MSAFQKSIRGSDV------------NAALHYLAR--LIAA 269

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIP 332
           G +      R L+ I+++ +G+  P
Sbjct: 270 GDLPTIV--RRLLVISYEDIGLASP 292


>gi|268319729|ref|YP_003293385.1| hypothetical protein FI9785_1258 [Lactobacillus johnsonii FI9785]
 gi|262398104|emb|CAX67118.1| conserved hypothetical protein [Lactobacillus johnsonii FI9785]
          Length = 431

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 64/323 (19%), Positives = 109/323 (33%), Gaps = 37/323 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+ L+E  GQ     N K+     +A+   L  ++  GPPG+GKT++A  +A 
Sbjct: 3   PLAYRMRPKNLDEVVGQEHLVGNKKIIRRMVEAK--LLSSMILYGPPGIGKTSIASAIAG 60

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR  +     K    + A    +    +L +DEIHRL    ++ L P +E   + 
Sbjct: 61  STKYAFRKLNAATDTKKDLQIVAEEGKMSGTVILLLDEIHRLDKTKQDFLLPLLESGNII 120

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           L+    E P         SR  +        +  +   DR                   +
Sbjct: 121 LIGATTENPYISISPAIRSRCQIFELHRLKKMDISHAIDR--------------ALKDSE 166

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR-RVRDFAEVAHAKTITREIADAALLR 252
            G     + +T  A   +  +  G  R     L   V    E     +  + + D A   
Sbjct: 167 IGLGKYNVELTKNARNLLIEKGNGDLRATLNALELAVLSTKEEKRDNSDNKLVIDKA-EM 225

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY---MIQQGF 309
               +      D            G     + +SA     R +  D    Y   + + G 
Sbjct: 226 QDSIQFKSQNYDA--------TSDGH---YDLLSAFQKSIRGSDTDAALYYLGNLCESGD 274

Query: 310 IQRTPRGRLLMPIAWQHLGIDIP 332
           +      R L+ IA++ +G+  P
Sbjct: 275 LVAIC--RRLLVIAYEDIGLANP 295


>gi|323466848|gb|ADX70535.1| ATPase, AAA family [Lactobacillus helveticus H10]
          Length = 437

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 66/329 (20%), Positives = 113/329 (34%), Gaps = 47/329 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+ L++  GQ     + K+     +AR   L  ++  GPPG+GKT++A  +A 
Sbjct: 3   PLAYRMRPQNLDQVVGQQHLIGSGKIIRRMVEAR--LLSSMILYGPPGIGKTSIASAIAG 60

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR  +     K      A    +    +L +DEIHRL    ++ L P +E  Q+ 
Sbjct: 61  STKYAFRKLNAATDGKKQLQQVAAEGKMSGTVILLLDEIHRLDKTKQDFLLPLLESGQII 120

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           L+    E P         SR  +           +   DR                T  +
Sbjct: 121 LIGATTENPYISISPAIRSRCQIFELKPLSAQDASSAIDR--------------ALTDKE 166

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV--------RDFAEVAHAKTITREI 245
            G     + +TD+A   +  +  G  R     L           +D  +   +  IT++ 
Sbjct: 167 NGLGNYPVELTDDARSLLIEKGNGDLRSTLNSLELAVLSTKQELKDNHQDTDSIVITQQE 226

Query: 246 ADAALLR--LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
              ++       D  G    D      +   F     G +T +A                
Sbjct: 227 MADSIQMKVQNFDSSGDGHYD------LVSAFQKSIRGSDTDAALH----------YLAK 270

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           +I+ G +      R L  IA++ +G+  P
Sbjct: 271 LIESGDLISIC--RRLSVIAYEDIGLANP 297


>gi|295692642|ref|YP_003601252.1| atpase, aaa family [Lactobacillus crispatus ST1]
 gi|295030748|emb|CBL50227.1| ATPase, AAA family [Lactobacillus crispatus ST1]
          Length = 435

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 67/329 (20%), Positives = 109/329 (33%), Gaps = 47/329 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP  L+E  GQ       K+     +AR   L  ++  GPPG+GKT++A  +A 
Sbjct: 3   PLAYRMRPTNLDEVVGQRHLIGPGKIIRRMVEAR--LLSSMILYGPPGIGKTSIASAIAG 60

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR  +     K      A    +    VL +DEIHRL    ++ L P +E  Q+ 
Sbjct: 61  STKYAFRKLNAATDGKKQLQQVAEEGKMSGTVVLLLDEIHRLDKTKQDFLLPLLESGQII 120

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           L+    E P         SR  +           +   DR                   +
Sbjct: 121 LIGATTENPYISISPAIRSRCQIFELKPLSTDDASHAIDR--------------ALNDKE 166

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR--------DFAEVAHAKTITREI 245
           +G     + +TD+A   +  +  G  R     L            D  +      IT++ 
Sbjct: 167 KGLGKYNVELTDDARALLIEKGNGDLRSTLNSLELAVLSTKQELQDKHQDDQKIIITQKE 226

Query: 246 ADAALLR--LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
              ++       D  G    D      +   F     G +T +A                
Sbjct: 227 MADSIQMKVQNFDASGDGHYD------LVSAFQKSIRGSDTDAALH----------YLAR 270

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           +I+ G +      R L  IA++ +G+  P
Sbjct: 271 LIESGDLVSIC--RRLAVIAYEDIGLADP 297


>gi|262283467|ref|ZP_06061233.1| recombination factor protein RarA [Streptococcus sp. 2_1_36FAA]
 gi|262260958|gb|EEY79658.1| recombination factor protein RarA [Streptococcus sp. 2_1_36FAA]
          Length = 422

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 65/326 (19%), Positives = 120/326 (36%), Gaps = 42/326 (12%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            +     +RP  +++  GQ       K+     +A    L  ++  GPPG+GKT++A  +
Sbjct: 2   PENLALRMRPSDIDQIIGQQHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           A      FR+ +  V +K      A         VL +DEIHRL    ++ L P +E   
Sbjct: 60  AGTTKFAFRTFNATVDSKKRLQEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGL 119

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + ++    E P         SR  +            PL +             +     
Sbjct: 120 VIMIGATTENPFFSVTPAIRSRVQIFEL--------EPLSNEDIRTAIQLALTDK----- 166

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA--EVAHAKTITREIADAA 249
            +RG     + + D+A   IA+ + G  R A   L         +    + IT ++ + +
Sbjct: 167 -ERGFD-FPVELDDDAMDFIAISTNGDLRSAYNSLDLAVLSTPEDDKGIRHITLDVMENS 224

Query: 250 LLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           L +    +DK G    D+  L+ + ++  G  V              ++       +++ 
Sbjct: 225 LQKSYITMDKDGDGHYDV--LSALQKSIRGSDV------------NASLHYAAR--LVEA 268

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
           G +      R L  IA++ +G+  P 
Sbjct: 269 GDLP--SLARRLTVIAYEDIGLANPD 292


>gi|83858523|ref|ZP_00952045.1| ATPase, AAA family protein [Oceanicaulis alexandrii HTCC2633]
 gi|83853346|gb|EAP91198.1| ATPase, AAA family protein [Oceanicaulis alexandrii HTCC2633]
          Length = 438

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 67/346 (19%), Positives = 117/346 (33%), Gaps = 60/346 (17%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D                  LRP+TLE+  GQ                    L  ++  
Sbjct: 1   MSDLFSSAGLETEAPRPLADRLRPQTLEDVVGQDHVLGPDGPLGRM--LAQGRLSSLILW 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALL------TNLEDRDVLFIDEI 114
           GPPG+GKTT+A+++A   G+ F + S  V +   DL                 +LF+DEI
Sbjct: 59  GPPGVGKTTIARLLAERAGLEFDAISA-VFSGVADLKKAFDRARARRQAGRGTLLFVDEI 117

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++   P  E+  + L+    E PS       LSR  ++               
Sbjct: 118 HRFNRAQQDGFLPVAEEGIITLVGATTENPSFELNAALLSRCQVMVLKR----------- 166

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGL--AVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
                      + E L+ +++      G    +T+EA   +   + G  R    +L    
Sbjct: 167 ----------LDAEALEKLLRCAEAEEGTTLPLTEEAREGLIAMADGDGRY---MLNLAE 213

Query: 231 DFAEVAHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAG 288
           +   +     +  +   + L + A   DK   +  +L                   ISA 
Sbjct: 214 ELIALKPETPLDLKDLSSVLQKRAPVYDKDREEHYNL-------------------ISAL 254

Query: 289 LSEPRDAIEDLIEPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIP 332
               R +  D    ++ +       P    R ++ +A + +G+  P
Sbjct: 255 HKSVRGSDPDAALYWLARMLSAGEDPLYLARRIVRMANEEIGLADP 300


>gi|329938952|ref|ZP_08288326.1| ATP/GTP binding protein [Streptomyces griseoaurantiacus M045]
 gi|329301837|gb|EGG45730.1| ATP/GTP binding protein [Streptomyces griseoaurantiacus M045]
          Length = 453

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 81/359 (22%), Positives = 127/359 (35%), Gaps = 68/359 (18%)

Query: 2   MDREGLLSRNVSQEDADIS------LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEA-- 53
           M+ +   +   ++++ D +       +RPR+L+E  GQ                   A  
Sbjct: 1   MEPDLFTAAAEARQEKDPAASPLAVRMRPRSLDEVMGQQHLLKPGSPLRRLVGEGTSAGS 60

Query: 54  ---LDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED----- 105
                 V+  GPPG GKTTLA VV++     F   S  + A   ++ A++          
Sbjct: 61  PAGPSSVILWGPPGTGKTTLAYVVSKATNKRFVELSA-ITAGVKEVRAVIDGARRATGGY 119

Query: 106 --RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFT-----L 156
               VLF+DEIHR S   ++ L PA+E+  + L+    E P    +   LSR        
Sbjct: 120 GTETVLFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYFSVISPLLSRSLLLTLEP 179

Query: 157 IAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT-GLAVTDEAACEIAMRS 215
           +      GLL   L D  G+   +     E+ +  + R A      A+T   A   A   
Sbjct: 180 LTDEDLRGLLHRALADERGLKGAVTL--PEETEAHLLRIAGGDARRALTALEAAAGAALD 237

Query: 216 RGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNF 275
           +G P I    L    D A V                    D+ G    D+   + + ++ 
Sbjct: 238 KGEPEIGLTTLEETVDRAAVK------------------YDRSGDQHYDVA--SALIKSI 277

Query: 276 GGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
            G  V                 D    Y+ +       PR   R LM  A + +G+  P
Sbjct: 278 RGSDV-----------------DAALHYLARMIEAGEDPRFIARRLMISASEDIGLADP 319


>gi|167041777|gb|ABZ06519.1| putative ATPase family associated with various cellular activities
           (AAA) [uncultured marine microorganism HF4000_093M11]
          Length = 125

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 79/125 (63%), Positives = 100/125 (80%)

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           + V  R+TSGPVI + GDLAA+LTNLE   + FIDEIHRL+ +VEE+LY AMEDF LD++
Sbjct: 1   MEVPLRATSGPVIERQGDLAAILTNLEPGTIFFIDEIHRLNRVVEEVLYGAMEDFTLDII 60

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
           +GEGP AR+VKI+L  FTL+ ATTR GLLT+PL++RFGI  RLNFY+ E+LKTI+ R A 
Sbjct: 61  IGEGPGARTVKIDLPHFTLVGATTRAGLLTSPLRERFGIQFRLNFYDPEELKTIILRAAS 120

Query: 198 LTGLA 202
           L G+ 
Sbjct: 121 LLGMK 125


>gi|124009494|ref|ZP_01694169.1| ATPase, AAA family [Microscilla marina ATCC 23134]
 gi|123984840|gb|EAY24808.1| ATPase, AAA family [Microscilla marina ATCC 23134]
          Length = 429

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 65/337 (19%), Positives = 121/337 (35%), Gaps = 60/337 (17%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           +  Q+      LRP+TL ++ GQ        V   +   +++ +  ++  GPPG+GKTTL
Sbjct: 6   DEPQKFPLAERLRPQTLAQYQGQAHLVGKNGVI--SKLLQSDKVPSMILWGPPGVGKTTL 63

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPA 128
           A+++   +   F + S  + +   ++  ++   + R   +LFIDEIHR +   ++ L  A
Sbjct: 64  ARLIGNHVKTPFFTLSA-INSGVKEVRQVIEKAKTRAGSILFIDEIHRFNKAQQDALLGA 122

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           +E   + L+    E PS   +    SR  +         +  PL               E
Sbjct: 123 VETGLITLIGATTENPSFEVISALQSRCQI--------YILQPL-------------SPE 161

Query: 187 DLKTIVQRG------AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK- 239
            L  +++         K   + + +  A      S G  R    L   V           
Sbjct: 162 TLVEMLENAQKQDEWLKKLNIKLKETEALLNL--SGGDARRLLNLFELVVSAFPANQDPL 219

Query: 240 --TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
             T    ++ A    +  DK G    D+                   +SA +   R +  
Sbjct: 220 VITNEWVLSTAQQKTVRYDKTGEQHYDI-------------------VSAFIKSIRGSDP 260

Query: 298 DLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           +    ++ +       P+   R L+  A + +G   P
Sbjct: 261 NAAVYWLARMIEGGEDPKFIARRLVISASEDIGNANP 297


>gi|289550607|ref|YP_003471511.1| ATPase of helicase subunit of the Holliday junction resolvase
           [Staphylococcus lugdunensis HKU09-01]
 gi|289180139|gb|ADC87384.1| ATPase of helicase subunit of the Holliday junction resolvase
           [Staphylococcus lugdunensis HKU09-01]
          Length = 422

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 65/325 (20%), Positives = 123/325 (37%), Gaps = 42/325 (12%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            +   S +RP+ ++E   Q        +     + +   L  ++F GPPG+GKT++A+ +
Sbjct: 3   NEPLASRMRPKNIDEIISQQHLVGPRGIIRRMVETK--RLSSMIFYGPPGIGKTSIAKAI 60

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           +      FR  +  V     D+  ++   +   + +L +DEIHRL    ++ L P +E+ 
Sbjct: 61  SGSTAYKFRQLNA-VTNTKKDMQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENG 119

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           ++ L+      P         SR  +            PL +       +   E +    
Sbjct: 120 KIVLIGATTSNPYHAINPAIRSRAQIFELY--------PLNEEDIKVALMRAIEDDS--- 168

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR-RVRDFAEVAHAKTITREIADAA 249
              RG       + ++A    + +S+G  R A   L   V    E    + +T   A   
Sbjct: 169 ---RGLASYHPHIDEDAIEYFSTQSQGDVRSALNALELAVLSADEDNGERHVTLTDAQDC 225

Query: 250 LLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           L + A   DK G    D+  ++   ++  G  V              A+  L    +I  
Sbjct: 226 LQKGAFVSDKDGDMHYDV--MSAFQKSIRGSDV------------NAALHYLAR--LIAA 269

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIP 332
           G +      R L+ I+++ +G+  P
Sbjct: 270 GDLPTIV--RRLLVISYEDIGLASP 292


>gi|297181007|gb|ADI17208.1| ATPase related to the helicase subunit of the holliday junction
           resolvase [uncultured delta proteobacterium
           HF0070_10I02]
          Length = 481

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 72/341 (21%), Positives = 125/341 (36%), Gaps = 54/341 (15%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            ++S +        + +RP +++E  GQ         F  A +     L  +L  GPPG 
Sbjct: 48  SVMSADTQ---PLAARMRPTSIDEIVGQDHLIGPDTPFRVALE--NGTLSSLLLWGPPGC 102

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLS 118
           GKTTLA+++A ++G+ F   S  V+    +L  LL    D         +LF+DEIHR +
Sbjct: 103 GKTTLARLLANKVGLKFLQLSA-VMDGIKELRKLLDRARDIKTLERRGSLLFVDEIHRWN 161

Query: 119 IIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
              ++ L P +E+  + L+    E P  + +    SR  L+          NPL +    
Sbjct: 162 KAQQDALLPHVEEGTVVLIGATTENPGFQIIPALRSRCWLLTL--------NPLGNEALT 213

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
            +        D      RG         +EA   I   + G  R A  +L R+     + 
Sbjct: 214 ELLRRALSNTD------RGLAKRNQMFDEEALHMIVAGASGDGRRALSVLERIS--GALD 265

Query: 237 HAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRD 294
             +T+ +E+    + +     D+ G     +                   +SA +   R 
Sbjct: 266 DGETVDKEMLQTVMGKTDLLHDRDGDAHYQV-------------------VSALIKSLRG 306

Query: 295 AIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +       +  +       P    R L+  A + +G   P 
Sbjct: 307 SDPQAALYWCARMLEGGEDPMFIARRLVIFASEDVGNADPR 347


>gi|227833218|ref|YP_002834925.1| recombination factor protein [Corynebacterium aurimucosum ATCC
           700975]
 gi|262184204|ref|ZP_06043625.1| recombination factor protein RarA [Corynebacterium aurimucosum ATCC
           700975]
 gi|227454234|gb|ACP32987.1| recombination factor protein [Corynebacterium aurimucosum ATCC
           700975]
          Length = 451

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 76/326 (23%), Positives = 120/326 (36%), Gaps = 48/326 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP++L+E  GQ              +   EA   V+  GPPG GKTTLA ++A 
Sbjct: 30  PLAARMRPQSLDEVVGQKHLLEPGTPLRRLVEGSGEA--SVILYGPPGTGKTTLASLIAS 87

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAME 130
            LG NF   S  + +    +  ++T+         R VLFIDE+HR S   ++ L  A+E
Sbjct: 88  SLGDNFIGLSA-LDSGVKQVREVITHARRELIEGRRTVLFIDEVHRFSKTQQDALLAAVE 146

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +  + L+    E PS   V            +  + L   PL D               L
Sbjct: 147 NRTVLLVAATTENPSFSVVAP--------LLSRSLLLHLEPLDD-------------ASL 185

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +++ +R  K          A E A+       +AG   RR   + E A            
Sbjct: 186 RSLAERALKSERGLAGRITATEDAL--DQLVLLAGGDARRTLTYLEAAAEAVPD------ 237

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
                   ++  D L       + R    G    + +SA +   R +  D    Y+ +  
Sbjct: 238 ------GGELTVDILKDNVNRAVVRYDRDGDQHYDVVSAFIKSIRGSDVDAALHYLARMI 291

Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIP 332
                PR   R L+  A + +G+  P
Sbjct: 292 EAGEDPRFIARRLIVHASEDIGMADP 317


>gi|257079358|ref|ZP_05573719.1| AAA ATPase [Enterococcus faecalis JH1]
 gi|256987388|gb|EEU74690.1| AAA ATPase [Enterococcus faecalis JH1]
          Length = 425

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 68/327 (20%), Positives = 116/327 (35%), Gaps = 49/327 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RPR L+E  GQ       K+     +A+   L  ++  GPPG GKT++A  +A 
Sbjct: 4   PLAYRMRPRHLDEVVGQQHLVGPGKIIRRMVEAK--MLSSMILYGPPGTGKTSIASAIAG 61

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR  +     K    + A    +    +L +DEIHRL    ++ L P +E+ ++ 
Sbjct: 62  STNYAFRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPHLENGRI- 120

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ-- 193
           +M+G       + IN                   ++ R  I       E +  + I +  
Sbjct: 121 IMIGATTENPYITIN-----------------PAIRSRTQIFEVKPLTETDIQQAIQEAL 163

Query: 194 ----RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT--ITREIAD 247
               RG     + + ++A   +   + G  R A   L                IT  I +
Sbjct: 164 TDSTRGLGDYPVHLEEKALQHLTRATNGDLRSALNGLELAVKSTPKNEQGEIKITLPIIE 223

Query: 248 AALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
             + R A   DK G    D      +   F     G +  +A                ++
Sbjct: 224 ECVQRKALTHDKDGDAHYD------VISAFQKSIRGSDVDAALH----------YLGRLV 267

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           + G +      R LM IA++ +G+  P
Sbjct: 268 EAGDLPIIC--RRLMVIAYEDIGLGNP 292


>gi|163733781|ref|ZP_02141223.1| ATPase, AAA family protein, putative [Roseobacter litoralis Och
           149]
 gi|161392892|gb|EDQ17219.1| ATPase, AAA family protein, putative [Roseobacter litoralis Och
           149]
          Length = 441

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 74/340 (21%), Positives = 128/340 (37%), Gaps = 62/340 (18%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           +   ++      LLRP++L+E  GQ +  +        +   A  +  ++  GPPG+GKT
Sbjct: 13  TPQNAKTRPLADLLRPQSLDEVIGQEKLLAEDGPL--GSMLAAGRVTSLILWGPPGVGKT 70

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVL------FIDEIHRLSIIVE 122
           T+A+++A +  ++F   S  + +   DL  +     DR V+      FIDEIHR +    
Sbjct: 71  TIARLLAHQTDLHFEQISA-IFSGVSDLKKVFQAARDRAVIGQGTFLFIDEIHRFNKAQL 129

Query: 123 EILYPAMEDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           + L P MED  + +     E PS       LSR  ++                       
Sbjct: 130 DSLLPVMEDGTVTVCGATTENPSFSVNGSVLSRCQVMVL--------------------- 168

Query: 181 NFYEIEDLKTIVQRGAKL--TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
              ++  L  ++ R        L +TD+A   +   + G  R    L+  VR +      
Sbjct: 169 ERLDVTALAGLLARAEAQTGQALPLTDDAKSLLCAMADGDGRALLNLVESVRAWPL---D 225

Query: 239 KTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEP-RDA 295
           +T + E     L R A   D+ G                         I++ L +  R +
Sbjct: 226 QTYSAEDIAGRLTRRAALHDRAGDGHY--------------------AIASALQKSIRGS 265

Query: 296 IEDLIEPYMIQQGFIQRTPRG--RLLMPIAWQHLGIDIPH 333
             +    ++ +       PR   R L  IAW+ +G+  P 
Sbjct: 266 DPEAAIYWVHRALEGGEDPRFILRRLTMIAWEDVGLADPE 305


>gi|93004934|ref|YP_579371.1| recombination factor protein RarA [Psychrobacter cryohalolentis K5]
 gi|92392612|gb|ABE73887.1| Recombination protein MgsA [Psychrobacter cryohalolentis K5]
          Length = 429

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 67/338 (19%), Positives = 118/338 (34%), Gaps = 52/338 (15%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           +  N   +      +RP TL+   GQ    +         +     L  ++  G  G+GK
Sbjct: 1   MPPNFHADTPLAQRMRPTTLDAIIGQEHLLAVGAPLRRLVEQGH--LPSIILHGEAGIGK 58

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE----DRDVLFIDEIHRLSIIVEE 123
           TT+A ++A  +   F + S  +      L  +L + +    +  V+FIDEIHR +   ++
Sbjct: 59  TTIAMLLADAVERPFHALSA-LNTGVKQLREVLDSKDSLSFESPVVFIDEIHRFNKAQQD 117

Query: 124 ILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
            L  A+E   + L+    E PS       LSR  +                         
Sbjct: 118 ALLGAVESGDITLIGATTENPSFSVNNALLSRCQVYRLK--------------------- 156

Query: 182 FYEIEDLKTIVQRGA----KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
               E +  ++QR       L  L+V  +A   I+  + G  R A  LL      A+   
Sbjct: 157 PLTPEQISAVLQRALLEDNILKNLSVDLQAQDTISQLAHGDARKALNLLELAIQTADTKQ 216

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
           +  I  +   A + +                T + R    G    + +SA +   R +  
Sbjct: 217 SPIILDDTLVARIAQ----------------TALVRYDKDGEQHYDMVSAMIKSVRGSDP 260

Query: 298 DLIEPYMIQQGFIQ--RTPRGRLLMPIAWQHLGIDIPH 333
           D    +M +            R L+ +A + +G   P+
Sbjct: 261 DAALYWMARMLVGGEPADFIARRLVILASEDIGNANPN 298


>gi|331701253|ref|YP_004398212.1| AAA ATPase central domain-containing protein [Lactobacillus
           buchneri NRRL B-30929]
 gi|329128596|gb|AEB73149.1| AAA ATPase central domain protein [Lactobacillus buchneri NRRL
           B-30929]
          Length = 425

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 75/328 (22%), Positives = 117/328 (35%), Gaps = 51/328 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP  LEE  GQ +     K+       RA+ L  ++  GPPG GKT++A  +A 
Sbjct: 4   PLAYRMRPTKLEEIVGQQDLVGPGKIIDRMV--RAKMLSSMILYGPPGTGKTSIASAIAG 61

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR  +     K    + A    +    VL +DEIHRL    ++ L P +E   + 
Sbjct: 62  STKYAFRVLNAATDTKKDLQVVAEEAKMSGTVVLLLDEIHRLDKTKQDFLLPLLESGSII 121

Query: 136 LM--VGEGPSARSVKINLSR-----FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           L+    E P         SR        + AT     L   L D+               
Sbjct: 122 LIGATTENPYININPAIRSRTQIFEVHPLTATDIQKALNRALNDK--------------- 166

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI--TREIA 246
               ++G     +++T EA   +A  + G  R +   L              I  T+ I 
Sbjct: 167 ----EKGLGNYPVSITKEALNFLATATNGDLRSSLNALELAVKSTPKNDQGKIAVTQAIV 222

Query: 247 DAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +  L R A+  DK G    D      +   F     G +T +A                +
Sbjct: 223 EECLQRKALNSDKNGDAHYD------VISAFQKSIRGSDTDAALH----------YAGRL 266

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           I+ G +      R L+ IA++ +G+  P
Sbjct: 267 IESGDLVSIM--RRLLVIAYEDVGLANP 292


>gi|152966979|ref|YP_001362763.1| recombination factor protein RarA [Kineococcus radiotolerans
           SRS30216]
 gi|151361496|gb|ABS04499.1| AAA ATPase central domain protein [Kineococcus radiotolerans
           SRS30216]
          Length = 456

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 80/342 (23%), Positives = 121/342 (35%), Gaps = 71/342 (20%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAA---KARAEALDHVLFVGPPGLGKTTLAQVVARE 77
            +RPR+L+E  GQ             A            V+  GPPG GKTTLA V+AR 
Sbjct: 24  RMRPRSLDEVVGQQHLLQPGSPLRRLAADGDLGRAGPASVILWGPPGTGKTTLASVLARS 83

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAME 130
            G  F   S  V A   D+  ++    D       + VLF+DEIHR +   ++ L P +E
Sbjct: 84  GGRKFAELSA-VTAGVKDVRRVVEAARDDRDLYRRQTVLFLDEIHRFTKAQQDALLPGVE 142

Query: 131 DFQLDLM--VGEGPSARSVKI-----NLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +  + L+    E P+   V        L     + A    GLL   ++D  G+       
Sbjct: 143 NRWVVLVAATTENPNFSVVTPLLSRSLLLTLQPLTAADVEGLLRKAVEDPRGLAG----- 197

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA--------EV 235
                            ++V DEA   +   + G  R A   L      A        +V
Sbjct: 198 ----------------EVSVDDEALAHLVRVADGDARRALTALEAAAGTALDDAPAAGDV 241

Query: 236 AHAKTI-TREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEP 292
                  T   A+ AL R A   D+ G    D+   + + ++  G  V            
Sbjct: 242 PGGGVRITLAHAERALDRAAVRYDRAGDQHYDVA--SALIKSMRGSDV------------ 287

Query: 293 RDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
                D    Y+ +       PR   R ++  A + +G+  P
Sbjct: 288 -----DAALHYLARMVEAGEDPRFIARRIVIAAAEDVGMADP 324


>gi|306832634|ref|ZP_07465773.1| AAA family ATPase [Streptococcus bovis ATCC 700338]
 gi|304425242|gb|EFM28369.1| AAA family ATPase [Streptococcus bovis ATCC 700338]
          Length = 422

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 66/320 (20%), Positives = 121/320 (37%), Gaps = 42/320 (13%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            +RP+ +++  GQ     + K+     +A    L  ++  GPPG+GKT++A  +A     
Sbjct: 8   RMRPKNIDQVIGQKHLVGDGKIIRRMVEA--NMLSSMILYGPPGIGKTSIASAIAGTTKY 65

Query: 81  NFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137
            FR+ +    +K      A         VL +DEIHRL    ++ L P +E+  + ++  
Sbjct: 66  AFRTFNATTDSKKRLQEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGNIIMIGA 125

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
             E P         SR        ++  L     D     ++    + E       RG  
Sbjct: 126 TTENPFFSVTPAIRSRV-------QIFELEPLSTDDIKTALQTALSDKE-------RGFD 171

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF--AEVAHAKTITREIADAALLRLA- 254
              + +  +A   IA  + G  R A   L        A+    + I+ +  + +L R   
Sbjct: 172 -FDVDIDADALDFIATATNGDLRSAFNSLDLAVMSTKADDNELRHISLDTVENSLQRSYI 230

Query: 255 -IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            +DK G    D+  L+ + ++  G  V              ++       +I+ G +   
Sbjct: 231 TMDKDGDGHYDV--LSALQKSIRGSDV------------NASLHYAAR--LIEAGDLP-- 272

Query: 314 PRGRLLMPIAWQHLGIDIPH 333
              R L  IA++ +G+  P 
Sbjct: 273 SLARRLTVIAYEDIGLANPD 292


>gi|297520076|ref|ZP_06938462.1| Holliday junction DNA helicase RuvB [Escherichia coli OP50]
          Length = 115

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 66/115 (57%), Positives = 86/115 (74%), Gaps = 1/115 (0%)

Query: 1   MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M++ + L+S   +  ED     +RP+ LEE+ GQ +  S +++FI+AAK R +ALDH+L 
Sbjct: 1   MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLI 60

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEI 114
            GP GLGKTTLA +VA E+GVN R+TSGPV+ KAGDLAA+LTNLE  DVLFIDEI
Sbjct: 61  FGPSGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEI 115


>gi|87200560|ref|YP_497817.1| recombination factor protein RarA [Novosphingobium aromaticivorans
           DSM 12444]
 gi|87136241|gb|ABD26983.1| Recombination protein MgsA [Novosphingobium aromaticivorans DSM
           12444]
          Length = 452

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 66/335 (19%), Positives = 114/335 (34%), Gaps = 56/335 (16%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
             S E      LRPR L E  GQ               A    L  ++  GPPG GKT++
Sbjct: 28  EASAEGPLADRLRPRDLSEIIGQDHLTGPDGAIGRMVAA--GKLTSMILWGPPGTGKTSI 85

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEI 124
           A+++A  +G+ + + S  V +   DL       E       R +LF+DEIHR +   ++ 
Sbjct: 86  ARLLAEAVGMRYVAISA-VFSGVADLKKAFAEAEAMALAGRRTLLFVDEIHRFNRAQQDG 144

Query: 125 LYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             P +E+  + L+    E PS       LSR  ++                       + 
Sbjct: 145 FLPFVENGTVTLVGATTENPSFALNAALLSRAQVLIL---------------------HR 183

Query: 183 YEIEDLKTIVQRGAKL--TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +   L T++ R   +    L +T  A   +   + G  R        + D        +
Sbjct: 184 LDAAALGTLLDRAEDVTGLRLPLTPPAREALVASADGDGRFLLNQAEMLFDV-------S 236

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           +   +    L +  + ++     D            G       ISA     R +     
Sbjct: 237 LPAPLDPEGLGKFLMRRVAVYDKDRE----------GH---YNLISALHKSVRGSDPQAA 283

Query: 301 EPYMIQQGFIQRTPRG--RLLMPIAWQHLGIDIPH 333
             Y+ +       P    R ++ +A + +G+  P 
Sbjct: 284 LYYLARMLVAGEEPLYLLRRMVRMAVEDIGLADPQ 318


>gi|57867117|ref|YP_188766.1| recombination factor protein RarA [Staphylococcus epidermidis
           RP62A]
 gi|251811032|ref|ZP_04825505.1| crossover junction endodeoxyribonuclease ATPase [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|282875948|ref|ZP_06284815.1| recombination factor protein RarA [Staphylococcus epidermidis
           SK135]
 gi|57637775|gb|AAW54563.1| ATPase, AAA family [Staphylococcus epidermidis RP62A]
 gi|251805450|gb|EES58107.1| crossover junction endodeoxyribonuclease ATPase [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|281294973|gb|EFA87500.1| recombination factor protein RarA [Staphylococcus epidermidis
           SK135]
 gi|329735258|gb|EGG71550.1| recombination factor protein RarA [Staphylococcus epidermidis
           VCU045]
 gi|329737108|gb|EGG73362.1| recombination factor protein RarA [Staphylococcus epidermidis
           VCU028]
          Length = 423

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 65/326 (19%), Positives = 123/326 (37%), Gaps = 43/326 (13%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +   S +RP+ ++E   Q        +       +   L  ++F GPPG+GKT++A+ ++
Sbjct: 4   EPLASRMRPKNIDEIISQQHLVGPKGIIRRMVDTK--RLSSMIFYGPPGIGKTSIAKAIS 61

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
                 FR  +  V     D+  ++   +   + +L +DEIHRL    ++ L P +E+ +
Sbjct: 62  GSTQFKFRQLNA-VTNTKKDMQLIVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGK 120

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + L+      P         SR  +               DR                  
Sbjct: 121 IVLIGATTSNPYHAINPAIRSRAQIFELYPLDQDDIRLALDR--------------AIND 166

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV--AHAKTITREIADAA 249
            +RG       V ++A    + +S+G  R A   L      A +   + + IT + A   
Sbjct: 167 KERGLSTYHPIVDEDAIEYFSTQSQGDVRSALNALELAVLSAHIGEENERHITLDDAKDC 226

Query: 250 LLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           L + A   DK G    D+  ++   ++  G  V              A+  L    +I+ 
Sbjct: 227 LQKGAFVSDKDGDMHYDV--MSAFQKSIRGSDV------------NAALHYLAR--LIEA 270

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
           G +      R L+ I+++ +G+  P+
Sbjct: 271 GDLPTIV--RRLLVISYEDVGLASPN 294


>gi|323490016|ref|ZP_08095237.1| hypothetical protein GPDM_11715 [Planococcus donghaensis MPA1U2]
 gi|323396312|gb|EGA89137.1| hypothetical protein GPDM_11715 [Planococcus donghaensis MPA1U2]
          Length = 429

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 60/325 (18%), Positives = 123/325 (37%), Gaps = 41/325 (12%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            +     +RPRT++E  GQ +   +     +        +  +L  G PG+GKT++A  +
Sbjct: 3   NEPLAFRMRPRTIDEVVGQKDVIGSHTALYKMI--SNGHVPSMLLYGEPGIGKTSIAHAI 60

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           A    + F + +    +   D+  ++T      + +LF+DEIHR + + ++ L P +E  
Sbjct: 61  AGTSNLPFIALNA-TTSGKKDVEEVVTEARMTGKVLLFLDEIHRFNKLQQDALLPHVESG 119

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
            + L+    E P         SR   I    R+        +     +     E      
Sbjct: 120 AIVLIGATTENPFHDVNPAIRSRCGEIKQLKRLSH------EDIVQLLNAALTEP----- 168

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
             +RG     + ++++    IA  + G  R A  +L  +   ++    K I  +     +
Sbjct: 169 --KRGLGNEEIEISEKQVERIAEGTNGDARKALTMLESIVIASDEIDGKYIVEDQMVEQM 226

Query: 251 LRL---AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           ++      DK G    +   L+ + ++  G  V                       +++ 
Sbjct: 227 IKRVGVFGDKKGSHFFN--LLSALQKSVRGSDVNAAMYYLAH--------------LLEN 270

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIP 332
           G +  T   R L+ +A++ +G+  P
Sbjct: 271 GDL--TAVTRRLLVMAYEDIGLANP 293


>gi|269956477|ref|YP_003326266.1| AAA ATPase central domain-containing protein [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269305158|gb|ACZ30708.1| AAA ATPase central domain protein [Xylanimonas cellulosilytica DSM
           15894]
          Length = 478

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 85/332 (25%), Positives = 129/332 (38%), Gaps = 37/332 (11%)

Query: 21  LLRPRTLEEFTGQVEAC---SNLKVFIEAAK--ARAEALDHVLFVGPPGLGKTTLAQVVA 75
            +RP +LEE  GQ       S L+  +E A   AR  A   V+  GPPG GKTTLA +VA
Sbjct: 29  RMRPASLEEVAGQDHLLAAGSPLRRLVEPADGTARRAAPGSVILWGPPGTGKTTLAYLVA 88

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPA 128
              G  F   S  V A   D+ A++ +   R        VLFIDE+HR S   ++ L P+
Sbjct: 89  TVSGRRFVELSA-VTAGVKDVRAVVEDARRRLAGSGEETVLFIDEVHRFSKSQQDALLPS 147

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           +E+  + L+    E PS   +   LSR  L+   +        L  R  +          
Sbjct: 148 VENRWVTLVAATTENPSFSVISPLLSRSLLLTLRSLTDDDVRGLVRRAVVD--------- 198

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA--EVAHAKTITRE 244
                 +RG     + +  +A  ++   + G  R A  +L      A  +   A+    E
Sbjct: 199 ------ERGLGG-AVHLDADAEDQLVRMAGGDARKALTILEAAAGTALTDADTARAHPEE 251

Query: 245 IADAALLRLAID--KMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
                      D  ++G   ++        R    G    + ISA +   R +  D    
Sbjct: 252 HTGEPAQEAGTDPVEIGLATVERAVDVAAVRYDRDGDQHYDVISAFIKSLRGSDVDAALH 311

Query: 303 YMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           Y+ +       PR   R LM  A + +G+  P
Sbjct: 312 YLARMVAAGEDPRYIARRLMVHAAEDVGMADP 343


>gi|295839928|ref|ZP_06826861.1| AAA family ATPase [Streptomyces sp. SPB74]
 gi|197696758|gb|EDY43691.1| AAA family ATPase [Streptomyces sp. SPB74]
          Length = 451

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 75/353 (21%), Positives = 124/353 (35%), Gaps = 58/353 (16%)

Query: 2   MDREGLLSRNVSQEDAD------ISLLRPRTLEEFTGQVEACS---NLKVFIEAAKARAE 52
           M+ +   +    +++ D         +RPRTL+E  GQ         L+  +        
Sbjct: 1   MEPDLFTAAAEERQEKDPGNSPLAVRMRPRTLDEVVGQQHLLGAGSPLRRLVGEGNGGPA 60

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------ED 105
               V+  GPPG GKTTLA VV++     F   S  + A   ++  ++            
Sbjct: 61  GASSVILWGPPGTGKTTLAYVVSKATDARFVELSA-ITAGVKEVRTVIDGARRASGGYGK 119

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRV 163
             VLF+DEIHR S   ++ L PA+E+  + L+    E P    +            +  +
Sbjct: 120 DTVLFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYFSVISP--------LLSRSL 171

Query: 164 GLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAG 223
            L   PL D     +       E       RG K   + + ++A   +   + G  R A 
Sbjct: 172 LLTLEPLTDEDIRALLHRSLTDE-------RGLKG-AVTLAEDAEEHLLRVAGGDARRAL 223

Query: 224 RLLRRVRDFAEVAHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVG 281
             L      A       IT    +  + + A   D+ G    D+   + + ++  G  V 
Sbjct: 224 TALEAGAGAALAKKEPAITLRTLEETVNKAALTYDRDGDQHYDVA--SALIKSIRGSDV- 280

Query: 282 IETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
                           D    Y+ +       PR   R LM  A + +G+  P
Sbjct: 281 ----------------DAALHYLARMIEAGEDPRFIARRLMISASEDIGLADP 317


>gi|302333301|gb|ADL23494.1| DNA-directed DNA polymerase III gamma and tau subunits
           [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 424

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 66/326 (20%), Positives = 125/326 (38%), Gaps = 43/326 (13%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +   S +RP+ ++E   Q        +       +   L  ++F GPPG+GKT++A+ ++
Sbjct: 4   EPLASRMRPKNIDEIISQQHLVGPRGIIRRMVDTK--KLTSMIFYGPPGIGKTSIAKAIS 61

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
                 FR  +  V     D+  ++   +   + +L +DEIHRL    ++ L P +E+ +
Sbjct: 62  GSTQYKFRQLNA-VTNTKKDMQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGK 120

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + L+      P         SR  +            PL D           E E     
Sbjct: 121 IVLIGATTSNPYHAINPAIRSRAQIFELY--------PLNDEDVRQALTRAIEDE----- 167

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK--TITREIADAA 249
            ++G K     + ++A    + +S+G  R A   L      A+        +T + A   
Sbjct: 168 -EKGLKTYQPKIDEDAMAYFSTQSQGDVRSALNALELAVLSADNDKDGYRHVTLQDAKDC 226

Query: 250 LLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           L + A   DK G    D+  ++   ++  G  V              A+  L    +I+ 
Sbjct: 227 LQKGAFVSDKDGDMHYDV--MSAFQKSIRGSDV------------NAALHYLAR--LIEA 270

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
           G +      R L+ I+++ +G+  P+
Sbjct: 271 GDLPTIV--RRLLVISYEDIGLASPN 294


>gi|256419214|ref|YP_003119867.1| ATPase AAA [Chitinophaga pinensis DSM 2588]
 gi|256034122|gb|ACU57666.1| AAA ATPase central domain protein [Chitinophaga pinensis DSM 2588]
          Length = 419

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 69/326 (21%), Positives = 121/326 (37%), Gaps = 47/326 (14%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +     +RP TL+E  GQ        +   A   +   +  ++  GPPG+GKTT+A ++A
Sbjct: 2   EPLAERIRPETLDELVGQEHLTGKDSILRTA--LQQGRIPSMILWGPPGVGKTTIANIIA 59

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             L V F + S  + A   ++  ++     +   VLFIDEIHR +   ++ L  A+E   
Sbjct: 60  HTLDVPFYTLSA-IAAGVKEVREVIEIARKQGYAVLFIDEIHRFNKSQQDALLGAVEKGI 118

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + L+    E PS       LSR  +         +  PL +R  + +     + ++    
Sbjct: 119 ITLIGATTENPSFEVNSALLSRSQV--------YVLKPLSERELLQLLQQAMQQDEW--- 167

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH-AKTITREIADAAL 250
                    + + +  A      S G  R    L   V    +         +++ D A 
Sbjct: 168 ----LGSKQIELKETTALFNI--SGGDARKLLNLFELVVSTLQNERPIVVTDQKVMDIAQ 221

Query: 251 LRLA-IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
            R+A  DK G    D+                   ISA +   R +  +    Y+ +   
Sbjct: 222 QRVAIYDKTGEQHYDI-------------------ISAFIKSIRGSDPNAAVYYLARMIE 262

Query: 310 IQRTPR--GRLLMPIAWQHLGIDIPH 333
                +   R L+  A + +G   P+
Sbjct: 263 GGEDVKFIARRLLISASEDIGNANPN 288


>gi|254374800|ref|ZP_04990281.1| hypothetical protein FTDG_00976 [Francisella novicida GA99-3548]
 gi|151572519|gb|EDN38173.1| hypothetical protein FTDG_00976 [Francisella novicida GA99-3548]
          Length = 412

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 66/323 (20%), Positives = 121/323 (37%), Gaps = 41/323 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP++++E  GQ    S   +  +      + +  ++  G PG+GKT+LA+++A 
Sbjct: 5   PLAARIRPQSIDEIVGQEHLLSQHGILTK--ILAGDGICSLVLCGKPGVGKTSLARIIAS 62

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQL 134
              + F   S  V +   D+  L+T+ +  D  VLF+DEIHR +   ++IL P +E  ++
Sbjct: 63  SKKLEFFELSA-VDSGVKDIKKLITDNQHLDSFVLFLDEIHRFNKSQQDILLPYVESGKI 121

Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            L+    E P+       +SR  ++       + T  L ++          + E L    
Sbjct: 122 ILIGATTENPTYYLNDALVSRLFILRLKRLSLVATQKLIEK-------TLSQDEVLAKH- 173

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
                     + D     +   S G  R    LL R+   +       + +E+ D A+  
Sbjct: 174 -------KFKIDDGLYNAMHNYSEGDCRKILNLLERMFLISTRGDEIYLNKELFDQAVGE 226

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
            + D                     G    E +SA     R    D    ++        
Sbjct: 227 TSRD-----------------FHREGKEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGV 269

Query: 313 TPR--GRLLMPIAWQHLGIDIPH 333
            P    R ++ IA + +G   P 
Sbjct: 270 DPLVIARRMLCIASEDIGNADPQ 292


>gi|325001185|ref|ZP_08122297.1| recombination factor protein RarA [Pseudonocardia sp. P1]
          Length = 462

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 79/334 (23%), Positives = 119/334 (35%), Gaps = 42/334 (12%)

Query: 11  NVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           +V + DA ++  +RPR+L+E  GQ E            +  A A   VL  GPPG GKTT
Sbjct: 23  SVPRPDAPLAARMRPRSLDEVVGQSELLEPGAPLRRLLEGGAAA--SVLLYGPPGTGKTT 80

Query: 70  LAQVVARELG-VNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIV 121
           LA+++A   G          + A   +L A++     R        VLFIDE+HR S   
Sbjct: 81  LARLMAGAGGAERHFVALSALSAGVKELRAVIEEARRRRDRSGTSTVLFIDEVHRFSRTQ 140

Query: 122 EEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           ++ L  A+ED  + L+    E PS   V   LSR  ++   +        L  R      
Sbjct: 141 QDALLGAVEDRLVLLVAATTENPSFSVVSPLLSRSLVLQLQSLGEDDVRALLRR------ 194

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
                        +RG     + +  +    +   S G  R A   L    D    A A 
Sbjct: 195 ---------AVASERGLAG-TVTLAADGEDALIRLSAGDGRRALTALEAAADGVLGAGAA 244

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
                                D ++     +  R    G    + ISA +   R +  D 
Sbjct: 245 AGDGPPVVD-----------LDAVERAVTEVAVRYDRAGDQHYDVISAFIKSIRGSDPDA 293

Query: 300 IEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
              Y+ +        R   R LM  A + +G+  
Sbjct: 294 ALHYLARMIVAGEDARFIARRLMVHASEDIGLAD 327


>gi|296197533|ref|XP_002746324.1| PREDICTED: ATPase WRNIP1-like isoform 3 [Callithrix jacchus]
          Length = 620

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 65/343 (18%), Positives = 123/343 (35%), Gaps = 37/343 (10%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLG 66
           R + +       +RP TL+++ GQ  A      L+  +E        +  ++  GPPG G
Sbjct: 220 RQMLEGKPLADKMRPDTLQDYFGQSRAVGQETLLRSLLE-----TNEIPSLILWGPPGCG 274

Query: 67  KTTLAQVVARELGVNFRST--SGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRL 117
           KTTLA ++A     +           AK  D+  ++   +        + +LFIDEIHR 
Sbjct: 275 KTTLAHIIANNSKKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRF 334

Query: 118 SIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
           +   ++   P +E   + L+    E PS +     LSR  +I            +  R  
Sbjct: 335 NKSQQDTFLPHVECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAI 394

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLA---VTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
             + ++  +       +   +  +      + D+A   +A  S G  R     L+     
Sbjct: 395 NSLGIHVLDSSRPTDPLSHSSNSSSEPAIFIEDKAVDTLAYLSDGDARAGLNGLQLAV-L 453

Query: 233 AEVAHAKTITRE-----IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISA 287
           A ++  K   ++          L+     K G  +  + Y      ++         ISA
Sbjct: 454 ARLSSRKMFCKKSGQTYSPSRVLITENDVKEGLQRSHILYDRAGEEHYNC-------ISA 506

Query: 288 GLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLG 328
                R + ++    ++ +       P    R L+  A + +G
Sbjct: 507 LHKSMRGSDQNASLYWLARMLEGGEDPLYVARRLVRFASEDIG 549


>gi|332521647|ref|ZP_08398100.1| AAA ATPase central domain protein [Lacinutrix algicola 5H-3-7-4]
 gi|332042736|gb|EGI78936.1| AAA ATPase central domain protein [Lacinutrix algicola 5H-3-7-4]
          Length = 425

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 63/329 (19%), Positives = 115/329 (34%), Gaps = 52/329 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP+TLE++  Q +         +  +     +  ++  GPPG+GKTTLA ++A 
Sbjct: 4   PLAERLRPKTLEDYVSQSQLVGKQGALTKQIQQ--GLIPSIILWGPPGIGKTTLANIIAN 61

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED--------RDVLFIDEIHRLSIIVEEILYPA 128
           E    F + S  + +   D+  ++   +           +LFIDEIHR S   ++ L  A
Sbjct: 62  ESKRPFYTLSA-ISSGVKDVREVIEKAKQSGGLFTTKNPILFIDEIHRFSKSQQDSLLQA 120

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           +E   + L+    E PS   +   LSR  +             L  R           IE
Sbjct: 121 VEKGWVTLIGATTENPSFEVIPALLSRCQVYILNAFEKKDLELLLQR----------AIE 170

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + +V +   +            +   S G  R    +   V +     +     +++ 
Sbjct: 171 KDEYLVNKKINIKETEA-------LIRISGGDARKLLNIFELVINAQNSDNITITNKDVL 223

Query: 247 DAAL-LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           D      +  DK G    D+                   +SA +   R +  +    Y+ 
Sbjct: 224 DKVQNNTVRYDKTGEQHYDI-------------------VSAFIKSIRGSDPNAAVYYLA 264

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           +        +   R ++ +A + +G   P
Sbjct: 265 RMVEGGEDVKFIARRMLILASEDIGNANP 293


>gi|227519321|ref|ZP_03949370.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis
           TX0104]
 gi|227555471|ref|ZP_03985518.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis
           HH22]
 gi|229545438|ref|ZP_04434163.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis
           TX1322]
 gi|255975483|ref|ZP_05426069.1| AAA ATPase [Enterococcus faecalis T2]
 gi|256762908|ref|ZP_05503488.1| recombination factor protein RarA [Enterococcus faecalis T3]
 gi|256853493|ref|ZP_05558863.1| recombination factor protein RarA [Enterococcus faecalis T8]
 gi|256961533|ref|ZP_05565704.1| AAA ATPase [Enterococcus faecalis Merz96]
 gi|257087183|ref|ZP_05581544.1| AAA ATPase [Enterococcus faecalis D6]
 gi|257090260|ref|ZP_05584621.1| recombination factor protein rarA [Enterococcus faecalis CH188]
 gi|257419659|ref|ZP_05596653.1| recombination factor protein rarA [Enterococcus faecalis T11]
 gi|293384708|ref|ZP_06630563.1| ATPase, AAA family [Enterococcus faecalis R712]
 gi|293387408|ref|ZP_06631963.1| ATPase, AAA family [Enterococcus faecalis S613]
 gi|294779740|ref|ZP_06745127.1| recombination factor protein RarA [Enterococcus faecalis PC1.1]
 gi|307268134|ref|ZP_07549521.1| recombination factor protein RarA [Enterococcus faecalis TX4248]
 gi|307277701|ref|ZP_07558787.1| recombination factor protein RarA [Enterococcus faecalis TX0860]
 gi|307287876|ref|ZP_07567909.1| recombination factor protein RarA [Enterococcus faecalis TX0109]
 gi|307295905|ref|ZP_07575737.1| recombination factor protein RarA [Enterococcus faecalis TX0411]
 gi|312900874|ref|ZP_07760168.1| recombination factor protein RarA [Enterococcus faecalis TX0470]
 gi|312902758|ref|ZP_07761962.1| recombination factor protein RarA [Enterococcus faecalis TX0635]
 gi|312908306|ref|ZP_07767270.1| recombination factor protein RarA [Enterococcus faecalis DAPTO 512]
 gi|312910620|ref|ZP_07769462.1| recombination factor protein RarA [Enterococcus faecalis DAPTO 516]
 gi|227073250|gb|EEI11213.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis
           TX0104]
 gi|227175393|gb|EEI56365.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis
           HH22]
 gi|229309354|gb|EEN75341.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis
           TX1322]
 gi|255968355|gb|EET98977.1| AAA ATPase [Enterococcus faecalis T2]
 gi|256684159|gb|EEU23854.1| recombination factor protein RarA [Enterococcus faecalis T3]
 gi|256711952|gb|EEU26990.1| recombination factor protein RarA [Enterococcus faecalis T8]
 gi|256952029|gb|EEU68661.1| AAA ATPase [Enterococcus faecalis Merz96]
 gi|256995213|gb|EEU82515.1| AAA ATPase [Enterococcus faecalis D6]
 gi|256999072|gb|EEU85592.1| recombination factor protein rarA [Enterococcus faecalis CH188]
 gi|257161487|gb|EEU91447.1| recombination factor protein rarA [Enterococcus faecalis T11]
 gi|291078015|gb|EFE15379.1| ATPase, AAA family [Enterococcus faecalis R712]
 gi|291083199|gb|EFE20162.1| ATPase, AAA family [Enterococcus faecalis S613]
 gi|294453114|gb|EFG21529.1| recombination factor protein RarA [Enterococcus faecalis PC1.1]
 gi|306496236|gb|EFM65815.1| recombination factor protein RarA [Enterococcus faecalis TX0411]
 gi|306501021|gb|EFM70328.1| recombination factor protein RarA [Enterococcus faecalis TX0109]
 gi|306505580|gb|EFM74764.1| recombination factor protein RarA [Enterococcus faecalis TX0860]
 gi|306515524|gb|EFM84052.1| recombination factor protein RarA [Enterococcus faecalis TX4248]
 gi|310625720|gb|EFQ09003.1| recombination factor protein RarA [Enterococcus faecalis DAPTO 512]
 gi|310633812|gb|EFQ17095.1| recombination factor protein RarA [Enterococcus faecalis TX0635]
 gi|311289168|gb|EFQ67724.1| recombination factor protein RarA [Enterococcus faecalis DAPTO 516]
 gi|311291973|gb|EFQ70529.1| recombination factor protein RarA [Enterococcus faecalis TX0470]
 gi|315025984|gb|EFT37916.1| recombination factor protein RarA [Enterococcus faecalis TX2137]
 gi|315028905|gb|EFT40837.1| recombination factor protein RarA [Enterococcus faecalis TX4000]
 gi|315033296|gb|EFT45228.1| recombination factor protein RarA [Enterococcus faecalis TX0017]
 gi|315143409|gb|EFT87425.1| recombination factor protein RarA [Enterococcus faecalis TX2141]
 gi|315147642|gb|EFT91658.1| recombination factor protein RarA [Enterococcus faecalis TX4244]
 gi|315149228|gb|EFT93244.1| recombination factor protein RarA [Enterococcus faecalis TX0012]
 gi|315163672|gb|EFU07689.1| recombination factor protein RarA [Enterococcus faecalis TX1302]
 gi|315167496|gb|EFU11513.1| recombination factor protein RarA [Enterococcus faecalis TX1341]
 gi|315169388|gb|EFU13405.1| recombination factor protein RarA [Enterococcus faecalis TX1342]
 gi|315574550|gb|EFU86741.1| recombination factor protein RarA [Enterococcus faecalis TX0309B]
 gi|315576689|gb|EFU88880.1| recombination factor protein RarA [Enterococcus faecalis TX0630]
 gi|315581808|gb|EFU93999.1| recombination factor protein RarA [Enterococcus faecalis TX0309A]
 gi|327535494|gb|AEA94328.1| replication-associated recombination protein A [Enterococcus
           faecalis OG1RF]
 gi|329568738|gb|EGG50538.1| ATPase, AAA family [Enterococcus faecalis TX1467]
          Length = 425

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 68/327 (20%), Positives = 116/327 (35%), Gaps = 49/327 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RPR L+E  GQ       K+     +A+   L  ++  GPPG GKT++A  +A 
Sbjct: 4   PLAYRMRPRHLDEVVGQQHLVGPGKIIRRMVEAK--MLSSMILYGPPGTGKTSIASAIAG 61

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR  +     K    + A    +    +L +DEIHRL    ++ L P +E+ ++ 
Sbjct: 62  STNYAFRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPHLENGRI- 120

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ-- 193
           +M+G       + IN                   ++ R  I       E +  + I +  
Sbjct: 121 IMIGATTENPYITIN-----------------PAIRSRTQIFEVKPLTETDIQQAIQEAL 163

Query: 194 ----RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT--ITREIAD 247
               RG     + + ++A   +   + G  R A   L                IT  I +
Sbjct: 164 TDSTRGLGDYPVHLEEKALQHLTRATNGDLRSALNGLELAVKSTPKNEQGEIKITLPIIE 223

Query: 248 AALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
             + R A   DK G    D      +   F     G +  +A                ++
Sbjct: 224 ECVQRKALTHDKDGDAHYD------VISAFQKSIRGSDVDAALH----------YLGRLV 267

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           + G +      R LM IA++ +G+  P
Sbjct: 268 EAGDLPIIC--RRLMVIAYEDIGLGNP 292


>gi|227535327|ref|ZP_03965376.1| crossover junction endodeoxyribonuclease [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
 gi|227187061|gb|EEI67128.1| crossover junction endodeoxyribonuclease [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
          Length = 423

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 67/318 (21%), Positives = 113/318 (35%), Gaps = 41/318 (12%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L+E  GQ +     ++      A    L  ++  GPPG GKT++A  +A      
Sbjct: 1   MRPQNLDEVVGQQDLVGPDRIIRRMVSAH--RLSSMILYGPPGTGKTSIASAIAGSTKYA 58

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--V 138
           FR  +     K    + A    +    +L +DEIHRL    ++ L P +E  ++ L+   
Sbjct: 59  FRILNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPLLESGRIVLIGAT 118

Query: 139 GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKL 198
            E P         SR       T++  +     D     I+    +        +RG   
Sbjct: 119 TENPYMNIQPAIRSR-------TQIFQVKPLTPDDIASAIKRALADH-------KRGLGD 164

Query: 199 TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE--IADAALLR--LA 254
             + +  +A   +   + G  R A   L         +   TIT +      +L +  LA
Sbjct: 165 YQVDLQPDALDYLTHATNGDLRSALNGLELAVLSTPASDDGTITIDLTTIQQSLQKPALA 224

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
            D  G    D      I   F     G +  +A                +I  G +    
Sbjct: 225 GDTNGDAHYD------IISAFQKSIRGSDADAALH----------YLARLIAIGDLNSIT 268

Query: 315 RGRLLMPIAWQHLGIDIP 332
             R L+ IA++ +G+  P
Sbjct: 269 --RRLLVIAYEDIGLANP 284


>gi|255655288|ref|ZP_05400697.1| recombination factor protein RarA [Clostridium difficile QCD-23m63]
 gi|296451272|ref|ZP_06893012.1| AAA family ATPase [Clostridium difficile NAP08]
 gi|296880376|ref|ZP_06904339.1| AAA family ATPase [Clostridium difficile NAP07]
 gi|296259878|gb|EFH06733.1| AAA family ATPase [Clostridium difficile NAP08]
 gi|296428617|gb|EFH14501.1| AAA family ATPase [Clostridium difficile NAP07]
          Length = 421

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 66/328 (20%), Positives = 121/328 (36%), Gaps = 47/328 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+T+ +  GQ     N K+   +   ++  L +++F GPPG+GKTT+A+++A 
Sbjct: 2   PLADKIRPKTMNDVIGQSHIIGNGKIL--SKILQSNFLPNMIFFGPPGVGKTTVAEIIA- 58

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE-----DRDVLFIDEIHRLSIIVEEILYPAMED 131
           E             +   D+  +++ L         +L+IDEI   +   ++ +   ME+
Sbjct: 59  ERSNKNFYKINATNSSLEDIKNVISELGSINNISGVLLYIDEIQSFNKKQQQSILEFMEN 118

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             + L+    E P     K  LSR T+        +       R    +  + Y      
Sbjct: 119 GSITLIASTTENPYHYVYKALLSRSTVFEFKPLEKIDIEKGLKRAVEVLNKDSY------ 172

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA--- 246
                      +    +A   IA+ S G  R A  +L  V    +         +     
Sbjct: 173 ---------MDIECNKDAIEYIAILSDGDMRRALNILEVVVYSTKPNKDNITYIDSDIIK 223

Query: 247 -DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
                  +  DK G    D   L+   ++  G            S+P+ +I  L    +I
Sbjct: 224 ASTFNKIINYDKNGDSHYD--ILSAFQKSIRG------------SDPQASIHYLAR--LI 267

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           + G +      R L+ IA + +G+  P+
Sbjct: 268 KGGDLISIC--RRLLVIASEDIGLAYPN 293


>gi|50307855|ref|XP_453921.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49643055|emb|CAH01017.1| KLLA0D19360p [Kluyveromyces lactis]
          Length = 559

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 74/358 (20%), Positives = 127/358 (35%), Gaps = 61/358 (17%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSN----LKVFIEAAKARAEALDHV 57
           MD E +      Q       LRP++L ++ GQ    +     L ++IE        +  +
Sbjct: 101 MDLE-IKQLQKVQHLPLSEKLRPKSLNDYIGQQHILNRETGCLYLYIE-----KGIIPSM 154

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------------- 103
           +  GPPG+GKT+LA+++   + +   +++  ++ +     A  T L              
Sbjct: 155 ILWGPPGVGKTSLARLLTNTVNIQSDASTKYLLLETSATKANTTELRSIFDKSKKEYHLT 214

Query: 104 EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATT 161
           +   VLFIDEIHR +   +++L P +E+  + L+    E PS +     LSR  L     
Sbjct: 215 KRMTVLFIDEIHRFNKAQQDLLLPHIENGDIVLIGATTENPSFQLNNALLSRCQLFVLEK 274

Query: 162 RVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRI 221
                   +  R    +       +    I +  A    L   ++    I   + G  R 
Sbjct: 275 LNDKELKIVLIRAIALLN------KYRSLIWKYSA---PLKFDEDCFSFIYDTAMGDTRR 325

Query: 222 AGRLLRRVRDFAEVAHAKTITREIAD-----AALLRLAIDKMGFDQLDLRYLTMIARNFG 276
           A  LL  +           I+ +           LR   D  G +  D            
Sbjct: 326 AINLLELLEISTRFKVEGPISLDKVKGLISSNGELRTYYDTHGENHYD------------ 373

Query: 277 GGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
                  TISA     R   E+    Y+ +       P    R ++ IA + +G+  P
Sbjct: 374 -------TISAFHKSVRGGDENAALYYLARMLQGGEDPLFIARRMIRIASEDVGLSDP 424


>gi|256964749|ref|ZP_05568920.1| AAA ATPase [Enterococcus faecalis HIP11704]
 gi|307272829|ref|ZP_07554076.1| recombination factor protein RarA [Enterococcus faecalis TX0855]
 gi|256955245|gb|EEU71877.1| AAA ATPase [Enterococcus faecalis HIP11704]
 gi|306510443|gb|EFM79466.1| recombination factor protein RarA [Enterococcus faecalis TX0855]
          Length = 425

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 68/327 (20%), Positives = 116/327 (35%), Gaps = 49/327 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RPR L+E  GQ       K+     +A+   L  ++  GPPG GKT++A  +A 
Sbjct: 4   PLAYRMRPRHLDEVVGQQHLVGPGKIIRRMVEAK--MLSSMILYGPPGTGKTSIASAIAG 61

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR  +     K    + A    +    +L +DEIHRL    ++ L P +E+ ++ 
Sbjct: 62  STNYAFRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPHLENGRI- 120

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ-- 193
           +M+G       + IN                   ++ R  I       E +  + I +  
Sbjct: 121 IMIGATTENPYITIN-----------------PAIRSRTQIFEVKPLTETDIQQAIQEAL 163

Query: 194 ----RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT--ITREIAD 247
               RG     + + ++A   +   + G  R A   L                IT  I +
Sbjct: 164 TDSTRGLGDYPVHLEEKALQHLTRTTNGDLRSALNGLELAVKSTPKNEQGEIKITLPIIE 223

Query: 248 AALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
             + R A   DK G    D      +   F     G +  +A                ++
Sbjct: 224 ECVQRKALTHDKDGDAHYD------VISAFQKSIRGSDVDAALH----------YLGRLV 267

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           + G +      R LM IA++ +G+  P
Sbjct: 268 EAGDLPIIC--RRLMVIAYEDIGLGNP 292


>gi|324994350|gb|EGC26264.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
           SK678]
 gi|327490776|gb|EGF22557.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
           SK1058]
 gi|332358558|gb|EGJ36382.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
           SK1056]
          Length = 422

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 67/326 (20%), Positives = 118/326 (36%), Gaps = 42/326 (12%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            +     +RP  +++  GQ       K+     +A    L  ++  GPPG+GKT++A  +
Sbjct: 2   PENLALRMRPTDIDQIIGQQHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           A      FR+ +  V +K      A         VL +DEIHRL    ++ L P +E   
Sbjct: 60  AGTTKFAFRTFNATVDSKKRLQEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGL 119

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + ++    E P         SR  +            PL +            I+   T 
Sbjct: 120 VIMIGATTENPFFSVTPAIRSRVQIFEL--------EPLSNDDIRTA------IQLALTD 165

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI--TREIADAA 249
           ++RG     + + DEA   IA  + G  R A   L                 T ++ + +
Sbjct: 166 MERGFD-FPVELDDEALDFIAFSTNGDLRSAYNSLDLAVLSTPEDGKGIRHITLDVMENS 224

Query: 250 LLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           L +    +DK G    D   L+ + ++  G  V              ++       +++ 
Sbjct: 225 LQKSYITMDKDGDGHYDA--LSALQKSIRGSDV------------NASLHYAAR--LVEA 268

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
           G +      R L  IA++ +G+  P 
Sbjct: 269 GDLP--SLARRLTVIAYEDIGLANPD 292


>gi|208779605|ref|ZP_03246950.1| ATPase, AAA family protein [Francisella novicida FTG]
 gi|208744566|gb|EDZ90865.1| ATPase, AAA family protein [Francisella novicida FTG]
          Length = 412

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 66/323 (20%), Positives = 120/323 (37%), Gaps = 41/323 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP++++E  GQ    S   +  +      + +  ++  G PG+GKT+LA+++A 
Sbjct: 5   PLAARIRPQSIDEIVGQEHLLSQHGILTK--ILAGDGICSLVLCGKPGVGKTSLARIIAS 62

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQL 134
              + F   S  V +   D+  L+T+ +  D  VLF+DEIHR +   ++IL P +E  ++
Sbjct: 63  SKKLEFFELSA-VDSGVKDIKKLITDNQHLDSFVLFLDEIHRFNKSQQDILLPYIESGKI 121

Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            L+    E P+       +SR  ++       + T  L +           + E L    
Sbjct: 122 ILIGATTENPTYYLNDALVSRLFILRLKRLSLVATQKLIEN-------ALSQDEVLAKH- 173

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
                     + D     +   S G  R    LL R+   +       + +E+ D A+  
Sbjct: 174 -------KFKLDDGLYNAMHNYSEGDCRKILNLLERMFLISTRGDEIYLNKELFDQAVGE 226

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
            + D                     G    E +SA     R    D    ++        
Sbjct: 227 TSRD-----------------FHREGKEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGV 269

Query: 313 TPR--GRLLMPIAWQHLGIDIPH 333
            P    R ++ IA + +G   P 
Sbjct: 270 DPLVIARRMLCIASEDIGNADPQ 292


>gi|312880507|ref|ZP_07740307.1| AAA ATPase central domain protein [Aminomonas paucivorans DSM
           12260]
 gi|310783798|gb|EFQ24196.1| AAA ATPase central domain protein [Aminomonas paucivorans DSM
           12260]
          Length = 450

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 64/332 (19%), Positives = 104/332 (31%), Gaps = 50/332 (15%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E      +RP +LE++ GQ                    +   +  GPPG+GKTTL +++
Sbjct: 26  ETPLAERMRPASLEDYVGQEHLVGPDGPLRR--LLDRNLVPSCILYGPPGVGKTTLVRLL 83

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNL--------EDRDVLFIDEIHRLSIIVEEILY 126
           A+         +  V AK   L  ++               + F+DEI+  +   +  L 
Sbjct: 84  AQVTDRPLLEINA-VSAKVAQLREMVEQARELKRARGGQSALAFVDEIYHFNTQQQNALL 142

Query: 127 PAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           PA+E   L L+    E P     K  LSR  +                            
Sbjct: 143 PAVETGDLVLVGTTTENPWFEINKTLLSRMLVYTLQPLEERHLLL--------------L 188

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +        RG     +A +D    E+A RS G  R A   L        V   + +  E
Sbjct: 189 LRRALEDPVRGLGRLEVAASDAVLGELAARSGGDARQALLRLEACVQAVAVGGGRVLDEE 248

Query: 245 IADA--ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           + +          D+ G D                       +SA +   R +  D    
Sbjct: 249 MVERVTGRALQRYDRSGDDHY-------------------AVVSAFIKSLRGSDPDAALY 289

Query: 303 YMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           +M +        R   R +   A + +G+  P
Sbjct: 290 WMARMLEAGDDVRFLARRMCIFAAEDVGLADP 321


>gi|307275918|ref|ZP_07557051.1| recombination factor protein RarA [Enterococcus faecalis TX2134]
 gi|306507248|gb|EFM76385.1| recombination factor protein RarA [Enterococcus faecalis TX2134]
          Length = 425

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 68/327 (20%), Positives = 116/327 (35%), Gaps = 49/327 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RPR L+E  GQ       K+     +A+   L  ++  GPPG GKT++A  +A 
Sbjct: 4   PLAYRMRPRHLDEVVGQQHLVGPGKIIRRMVEAK--MLSSMILYGPPGTGKTSIASAIAG 61

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR  +     K    + A    +    +L +DEIHRL    ++ L P +E+ ++ 
Sbjct: 62  STNYAFRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPHLENGRI- 120

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ-- 193
           +M+G       + IN                   ++ R  I       E +  + I +  
Sbjct: 121 IMIGATTENPYITIN-----------------PAIRSRTQIFEVKPLTETDIQQAIQEAL 163

Query: 194 ----RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT--ITREIAD 247
               RG     + + ++A   +   + G  R A   L                IT  I +
Sbjct: 164 TDSTRGLGDYPVHLEEKALQHLTRATNGDLRSALNGLELAVKSTPKNEQGEIKITLPIIE 223

Query: 248 AALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
             + R A   DK G    D      +   F     G +  +A                ++
Sbjct: 224 ECVQRKALTHDKDGDAHYD------VISAFQKSIRGSDVDAALH----------YLGRLV 267

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           + G +      R LM IA++ +G+  P
Sbjct: 268 EAGDLPIIC--RRLMVIAYEDIGLGNP 292


>gi|227893680|ref|ZP_04011485.1| crossover junction endodeoxyribonuclease ATPase [Lactobacillus
           ultunensis DSM 16047]
 gi|227864540|gb|EEJ71961.1| crossover junction endodeoxyribonuclease ATPase [Lactobacillus
           ultunensis DSM 16047]
          Length = 431

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 70/323 (21%), Positives = 118/323 (36%), Gaps = 46/323 (14%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           +     L+RP TL+E  GQ    +  K   +  K        +L  GPPG GKTTLA V+
Sbjct: 4   KQPLADLMRPNTLDEMIGQEHLLTPGKPLYQIIKNHVSI--SLLLWGPPGCGKTTLAHVM 61

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A  L + F   +  +  K+   A +  + E+  VL +DEIHRL+  +++ L P +E+  +
Sbjct: 62  ANTLKIPFEKFNASIQNKSQLQALVRKHPEESFVLLLDEIHRLTKPIQDYLLPYLENGHI 121

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
            L+VG       + I                    ++ R  I         +    +++ 
Sbjct: 122 -LLVGTTTENPIMAIQ-----------------PAIRSRCQIFEFKPIAPKDVEPVLIKA 163

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
             +    +++ E A  IA    G  R++  +L  +   A      T+      A     +
Sbjct: 164 ANEHLDFSLSKEQAHAIANCGNGDVRVSLNILDTL--HAMCLDKLTMDDIADFARNQHFS 221

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM---IQQGFIQ 311
            DK      D                    ISA  +    +  D    Y+   +Q G + 
Sbjct: 222 YDKDATQHYD-------------------YISAFSNSIEGSDADAALYYLAVILQSGDLA 262

Query: 312 RTPRGRLLMPIAWQHLGIDIPHR 334
                R L   A   +G+  P +
Sbjct: 263 SVV--RRLKDSAALDVGLADPEK 283


>gi|162148061|ref|YP_001602522.1| recombination factor protein RarA [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209542678|ref|YP_002274907.1| recombination factor protein RarA [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161786638|emb|CAP56221.1| ATPase, AAA family protein [Gluconacetobacter diazotrophicus PAl 5]
 gi|209530355|gb|ACI50292.1| AAA ATPase central domain protein [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 473

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 69/330 (20%), Positives = 111/330 (33%), Gaps = 58/330 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP +L++  GQ                   +L  ++  G PG+GKTT+A+++A 
Sbjct: 46  PLADRLRPESLDDVVGQDHLLGPDGALRRM--LDRGSLASLILWGGPGVGKTTIARLLAD 103

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
             G+ F   S        + +A D A  L       +LF+DEIHR +   ++   P +ED
Sbjct: 104 AAGLRFVQLSAVFSGVADLKRAFDDARRLGEAGQGTLLFVDEIHRFNRAQQDGFLPVVED 163

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             + L+    E PS       LSR  ++                          +   L+
Sbjct: 164 GTVVLVGATTENPSFALNGALLSRCQVMVLRR---------------------LDDPALE 202

Query: 190 TIVQRG--AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            ++ R   A    L +T +    +   + G  R    LL  V     V   + +      
Sbjct: 203 RLLCRAEEATGRALPLTPDGRATLRAMADGDGRY---LLNMVEQVLAVRTDQPMDAHGLS 259

Query: 248 AALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
             L R A   DK   +  +L                   ISA     R +  D    +  
Sbjct: 260 GLLARRAVLYDKDREEHYNL-------------------ISALHKSLRGSDTDAALYWFA 300

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +       PR   R L   A + +G+  P 
Sbjct: 301 RMLEGGEDPRYIARRLTRFAAEDVGMADPQ 330


>gi|225859546|ref|YP_002741056.1| recombination factor protein RarA [Streptococcus pneumoniae 70585]
 gi|225721322|gb|ACO17176.1| chromosome segregation helicase [Streptococcus pneumoniae 70585]
          Length = 423

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 68/327 (20%), Positives = 121/327 (37%), Gaps = 44/327 (13%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            D     +RP+T+++  GQ     + K+     +A    L  ++  GPPG+GKT++A  +
Sbjct: 2   PDNLALRMRPKTIDQVIGQEHLVGSGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           A      FR+ +  V +K   L  +    +     VL +DEIHRL    ++ L P +E  
Sbjct: 60  AGTTKYAFRTFNATVDSKKR-LQEISEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESG 118

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
            + ++    E P         SR  +            PL ++                 
Sbjct: 119 LVIMIGATTENPFFSVTPAIRSRVQIFEL--------EPLSNQDVKEALQIALSNP---- 166

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI--TREIADA 248
             +RG     + + ++A   IA  + G  R A   L                 T +I + 
Sbjct: 167 --ERGFD-FPIELDEDALDFIATSTNGDLRSAFNSLDLAVLSTPENDEGIRHITLDIMEN 223

Query: 249 ALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           +L R    +DK G    D+  L+ + ++  G  V              ++       +I+
Sbjct: 224 SLQRSYITMDKDGDGHYDV--LSALQKSIRGSDVDA------------SLHYAAR--LIE 267

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            G +      R L  IA++ +G+  P 
Sbjct: 268 AGDLP--SLARRLTVIAYEDIGLANPE 292


>gi|134098618|ref|YP_001104279.1| recombination factor protein RarA [Saccharopolyspora erythraea NRRL
           2338]
 gi|291009604|ref|ZP_06567577.1| recombination factor protein RarA [Saccharopolyspora erythraea NRRL
           2338]
 gi|133911241|emb|CAM01354.1| AAA ATPase, central region [Saccharopolyspora erythraea NRRL 2338]
          Length = 453

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 78/346 (22%), Positives = 125/346 (36%), Gaps = 57/346 (16%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           + +      +++       +RPR+L+E  GQ              +    A   VL  GP
Sbjct: 14  EADDRAGERLAENAPLAVRMRPRSLDEVIGQKHLLGPGAPLRRLVE--GAAPASVLLYGP 71

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIH 115
           PG GKTTLA +V+   G  F + S  + +   ++ A++     R        VLFIDE+H
Sbjct: 72  PGTGKTTLANLVSLATGRRFVALSA-LSSGVKEVRAVIEEARRRLGRTAEATVLFIDEVH 130

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATT-----RVGLLTN 168
           R S   ++ L  A+ED  + L+    E PS   V   LSR  ++   +        L+  
Sbjct: 131 RFSKTQQDALLGAVEDRTVLLVAATTENPSFSVVAPLLSRSLVLQLRSHGEDDIRELVRR 190

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            + D  G+   L   E E    +V         A+T   A   +  S G+ +I    +  
Sbjct: 191 AVADERGLGGALEL-EPEAEAHLVSLAGGDARRALTALEAAAESAASTGSDKIDLTTVEA 249

Query: 229 VRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAG 288
             D A V                    D+ G    D+                   +SA 
Sbjct: 250 TVDRAAV------------------LYDRDGDQHYDV-------------------VSAF 272

Query: 289 LSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           +   R +  D    Y+ +       PR   R L+  A + +G+  P
Sbjct: 273 IKSIRGSDVDAALHYLARMVEAGEDPRFIARRLVVHASEDIGMADP 318


>gi|238855295|ref|ZP_04645614.1| recombination factor protein RarA [Lactobacillus jensenii 269-3]
 gi|260664653|ref|ZP_05865505.1| recombination factor protein RarA [Lactobacillus jensenii SJ-7A-US]
 gi|282932412|ref|ZP_06337837.1| replication-associated recombination protein A [Lactobacillus
           jensenii 208-1]
 gi|313471894|ref|ZP_07812386.1| ATPase, AAA family [Lactobacillus jensenii 1153]
 gi|238832187|gb|EEQ24505.1| recombination factor protein RarA [Lactobacillus jensenii 269-3]
 gi|239529188|gb|EEQ68189.1| ATPase, AAA family [Lactobacillus jensenii 1153]
 gi|260561718|gb|EEX27690.1| recombination factor protein RarA [Lactobacillus jensenii SJ-7A-US]
 gi|281303361|gb|EFA95538.1| replication-associated recombination protein A [Lactobacillus
           jensenii 208-1]
          Length = 433

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 68/327 (20%), Positives = 112/327 (34%), Gaps = 45/327 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+ L E  GQ       K+     +A+   L  ++  GPPG+GKT++A  +A 
Sbjct: 3   PLAYRMRPKDLSEVVGQQHLVGPGKIIRRMVEAK--LLSSMILYGPPGIGKTSIASAIAG 60

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR  +     K      AL   +    +L +DEIHRL    ++ L P +E  Q+ 
Sbjct: 61  STKYAFRILNAATDTKKDLQQVALEAKMSGTVILLLDEIHRLDKTKQDFLLPLLESGQIV 120

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           L+    E P         SR  +           +PL              I++      
Sbjct: 121 LIGATTENPYISISPAIRSRCQIFEL--------HPLSASDAQIA------IQNALKDSD 166

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK------TITREIAD 247
           RG     + +  +A   +  +  G  R     L          + K       IT+EI  
Sbjct: 167 RGLGKYHVQLNSDAEQLLIEKGNGDLRATLNALELAVLSTYAENGKDTQNKLVITQEIMA 226

Query: 248 AALLR--LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
            ++       D  G    D      +   F     G +T +A                +I
Sbjct: 227 DSIQVKSQNFDANGDGHYD------LVSAFQKSIRGSDTDAALH----------YLARLI 270

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           + G +      R L+ IA++ +G+  P
Sbjct: 271 ESGDLISIC--RRLLVIAYEDIGLANP 295


>gi|86143957|ref|ZP_01062325.1| putative ATPase, AAA family protein [Leeuwenhoekiella blandensis
           MED217]
 gi|85829664|gb|EAQ48127.1| putative ATPase, AAA family protein [Leeuwenhoekiella blandensis
           MED217]
          Length = 425

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 65/334 (19%), Positives = 113/334 (33%), Gaps = 62/334 (18%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP+TL+++  Q     +      + K  +  +  ++  GPPG+GKTTLA ++A 
Sbjct: 4   PLAERLRPKTLDDYLSQEHLVGDKGSLTSSIK--SGVIPSLILWGPPGVGKTTLASIIAE 61

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL--------EDRDVLFIDEIHRLSIIVEEILYPA 128
           E    F   S  + +   D+  ++           +   +LFIDEIHR S   ++ L  A
Sbjct: 62  ESKRPFYVLSA-INSGVKDVREVIDKAKNAGGLFTQKNPLLFIDEIHRFSKSQQDSLLAA 120

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPL------QDRFGIPIRL 180
           +E   + L+    E PS   +   LSR  +             L      QD       +
Sbjct: 121 VEKGWVTLIGATTENPSFEVIPALLSRCQVYVLNPFSADDLRALLKRAMTQDSILSKKEI 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
              E E L  I    A+            E + +   T  +  + +++            
Sbjct: 181 ELQETEALLRISGGDARKLLNIFELLVTTETSEKVVITNAMVQQKVQQ------------ 228

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
                       +  DK G    D+                   ISA +   R +  +  
Sbjct: 229 ----------NTVMYDKTGEQHYDI-------------------ISAFIKSIRGSDPNAA 259

Query: 301 EPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
             Y+ +        +   R L+ +A + +G   P
Sbjct: 260 VYYLARMLEGGEDLKFIARRLIILASEDIGNANP 293


>gi|108803881|ref|YP_643818.1| recombination factor protein RarA [Rubrobacter xylanophilus DSM
           9941]
 gi|108765124|gb|ABG04006.1| Recombination protein MgsA [Rubrobacter xylanophilus DSM 9941]
          Length = 429

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 80/338 (23%), Positives = 131/338 (38%), Gaps = 63/338 (18%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           S N++        LRPR+L+E  GQ           EAA+     +  V+  GPPG GKT
Sbjct: 9   SENLAARAPLAERLRPRSLDEVVGQPHLAGEGGPLREAAER--GRVGSVILWGPPGTGKT 66

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIV 121
           TLA+V+A  +   F   S  V +   DL A L    +R        +LF+DE+HR +   
Sbjct: 67  TLARVLAASVEEEFVPLSA-VTSGVRDLRAALDGARERLKYEGRGTLLFVDEVHRFNKAQ 125

Query: 122 EEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           ++ L PA+E+  +D +    E PS       LSR  ++                      
Sbjct: 126 QDALLPALEEGLVDFIGATTENPSFEVTAPLLSRSRVLRL-------------------- 165

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
                  DL+ +++RG    G+ ++ EA   +        R+AG   RR+ +  EVA + 
Sbjct: 166 -RPLSKGDLEALLERGLSELGVGISGEARDYLL-------RLAGGDARRMLNALEVAASG 217

Query: 240 TIT--REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
                    + AL + A+     +  D+  ++   ++  GG                   
Sbjct: 218 RREVGVAEIERALGQRALRYGREEHYDV--VSAFIKSVRGGD-----------------P 258

Query: 298 DLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           D    Y+ +       P    R L+ +A + +G   P 
Sbjct: 259 DAALHYLARMIEAGEDPVFIARRLVILASEDVGNADPR 296


>gi|294790942|ref|ZP_06756100.1| ATPase, AAA family [Scardovia inopinata F0304]
 gi|294458839|gb|EFG27192.1| ATPase, AAA family [Scardovia inopinata F0304]
          Length = 506

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 85/352 (24%), Positives = 133/352 (37%), Gaps = 46/352 (13%)

Query: 7   LLSRNVSQEDA----DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAE---ALDHVLF 59
           L S     +DA        +RP  +E+  GQ +A          A+  A    A   ++ 
Sbjct: 10  LFSAAGVSDDAVTRPLAVRMRPTRVEDVVGQGQALQPGSPLRRVAQPPAHSRTAPTSIIL 69

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFID 112
            GPPG+GKTTLA + AR+ G  F   S  V +   DL  +L    +R        VLFID
Sbjct: 70  FGPPGVGKTTLAYIAARQSGRAFEELSA-VTSGVKDLRQVLQRAHERLVSQGKETVLFID 128

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATT-----RVGL 165
           E+HR S   ++ L P++E+  +  +    E PS   +   LSR  ++   T        +
Sbjct: 129 EVHRFSKSQQDALLPSVENRDITFIGATTENPSFSIISPLLSRSVVVKLETLSADDIKAI 188

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           L   L    G+   +   E   L+ I++  A     A+T   A   A+    T       
Sbjct: 189 LLRALASEQGLNKEVTLQES-ALEDIIRLSAGDGRKALTILEAAAGAVSGDKTDTADKAD 247

Query: 226 LRRVRDFAEVAHAKTITREIADAALL--RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIE 283
              +   A       IT E+    +   +LA D+ G +  D+                  
Sbjct: 248 ASGMDRAAPGEKKPIITSEVISQVMDVAQLAYDRQGDEHYDVA----------------- 290

Query: 284 TISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
             SA +   R +  D    Y+ +       PR   R +M  A + +G+  P 
Sbjct: 291 --SAFIKSMRGSDVDASLHYLARMIRAGEDPRFIARRIMIAASEEVGMAAPQ 340


>gi|332678703|gb|AEE87832.1| ATPase, AAA family [Francisella cf. novicida Fx1]
          Length = 412

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 65/323 (20%), Positives = 121/323 (37%), Gaps = 41/323 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP++++E  GQ    S   +  +      + +  ++  G PG+GKT+LA+++A 
Sbjct: 5   PLAARIRPQSIDEIVGQEHLLSQHGILTK--ILAGDGICSLVLCGKPGVGKTSLARIIAS 62

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQL 134
              + F   S  V +   D+  L+T+ +  D  VLF+DEIHR +   +++L P +E  ++
Sbjct: 63  SKKLEFFELSA-VDSGVKDIKKLITDNQHLDSFVLFLDEIHRFNKSQQDLLLPYVESGKI 121

Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            L+    E P+       +SR  ++       + T  L ++          + E L    
Sbjct: 122 ILIGATTENPTYYLNDALVSRLFILRLKRLSLVATQKLIEK-------ALSQDEVLAKH- 173

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
                     + D     +   S G  R    LL R+   +       + +E+ D A+  
Sbjct: 174 -------KFKIDDGLYNAMHNYSEGDCRKILNLLERMFLISTRGDEIYLNKELFDQAVGE 226

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
            + D                     G    E +SA     R    D    ++        
Sbjct: 227 TSRD-----------------FHREGKEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGV 269

Query: 313 TPR--GRLLMPIAWQHLGIDIPH 333
            P    R ++ IA + +G   P 
Sbjct: 270 DPLVIARRMLCIASEDIGNADPQ 292


>gi|255947800|ref|XP_002564667.1| Pc22g06370 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211591684|emb|CAP97925.1| Pc22g06370 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 539

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 65/333 (19%), Positives = 116/333 (34%), Gaps = 65/333 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+TLEE  GQ        +     +   + +  ++  G  G GKTT+A+V+A 
Sbjct: 123 PLAERMRPKTLEEVCGQE-LVGPNGILRGLIEQ--DRVPSMILWGSAGTGKTTIARVIAS 179

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAM 129
            +G  F   +    +   +   +             + ++F DEIHR S   +++    +
Sbjct: 180 LVGSRFVEINS-TSSGVAECKKIFAEARSELGLTGRKTIIFCDEIHRFSKSQQDVFLGPV 238

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E  Q+ L+    E PS +     LSR                                ED
Sbjct: 239 ESGQVTLIGATTENPSFKVQNALLSRCRTFTL---------------------AKLTDED 277

Query: 188 LKTIVQRGAKLTGLAV------TDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           + +I+ R  ++ G +        +E    +A  + G  R +  LL    D ++ A    +
Sbjct: 278 IISILHRALQVEGPSYSPSELVDEELIQYLARFADGDARTSLNLLELAMDLSKRAG---M 334

Query: 242 TREIADAALLRL-AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
            +E    +L +    D+ G    D                   TISA     R +  D  
Sbjct: 335 DKEDLKRSLTKTLVYDRAGDQHYD-------------------TISAFHKSIRGSDPDAA 375

Query: 301 EPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
             Y+ +       P    R L+ +A + +G+  
Sbjct: 376 LYYLARMIQSGEDPLYISRRLIVVASEDIGLAD 408


>gi|289706214|ref|ZP_06502577.1| recombination factor protein RarA [Micrococcus luteus SK58]
 gi|289557053|gb|EFD50381.1| recombination factor protein RarA [Micrococcus luteus SK58]
          Length = 465

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 74/326 (22%), Positives = 122/326 (37%), Gaps = 39/326 (11%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEA---LDHVLFVGPPGLGKTTLAQVVARE 77
            +RPRTL++  GQ           + A+   ++      V+  GPPG+GKTTLA V+AR 
Sbjct: 33  RMRPRTLDDVLGQRHLMRPGSPLRKLAEPDPDSAAGPSSVILYGPPGIGKTTLAHVIARA 92

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAME 130
            G  F   S  + A   D+  ++   +          VLF+DEIHR S   ++ L P +E
Sbjct: 93  PGRTFTELSA-ITAGVKDVRQVMEQAQRERDLYGRTTVLFLDEIHRFSKAQQDALLPGVE 151

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +  + L+    E PS   +            +  + L   PL D   + +       E  
Sbjct: 152 NRWVVLVAATTENPSFSVIAP--------LLSRSLLLTLRPLTDDDIVGLLDRAVTQE-- 201

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
                RG     + + D+A   +   + G  R A  +L      A     +         
Sbjct: 202 -----RGLNG-AVVLEDDARDYLVRMAGGDARRALTVLEAAAGVALDKAREAGRAAEGAV 255

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           A+     ++     +D      + R    G    + ISA +   R +  D    Y+ +  
Sbjct: 256 AVT----EEDAAQAMDHH----VQRYDKDGDQHYDVISAFIKSIRGSDVDASMHYLARML 307

Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIP 332
                PR   R L+  A + +G+  P
Sbjct: 308 EAGEDPRFIARRLIISASEDVGMADP 333


>gi|257455948|ref|ZP_05621165.1| ATPase, AAA family [Enhydrobacter aerosaccus SK60]
 gi|257446694|gb|EEV21720.1| ATPase, AAA family [Enhydrobacter aerosaccus SK60]
          Length = 428

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 71/336 (21%), Positives = 124/336 (36%), Gaps = 62/336 (18%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP++L+E  GQ              +     L  ++  G  G+GKTTLA ++A 
Sbjct: 9   PLAQRVRPKSLDEVIGQTHLLGANAPIRRIVEQ--GYLPSIILHGEAGIGKTTLAMLLAD 66

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTN----LEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
            +G  FR  S  + A   +L  +L        +  V+F+DEIHR +   ++ L  A+E  
Sbjct: 67  AVGRPFRPLSA-INAGVKELREVLAKDDGLFGEPPVVFVDEIHRFNKAQQDALLGAVESG 125

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
            + L+    E PS       LSR  +           NPL               +++  
Sbjct: 126 DITLIGATTENPSFSVNNALLSRCQVYRL--------NPL-------------SEDEISQ 164

Query: 191 IVQRG----AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR----DFAEVAHAKTIT 242
           ++QR     A      +  +++  I   S+G  R A  LL        +F + + +  + 
Sbjct: 165 VLQRAIDDDAVFKQFKIEIQSSQAIFALSQGDARKALNLLELAIQSSPNFKQGSQSAIVV 224

Query: 243 REIADAALL---RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            +    A+     +  DK G    DL                   +SA +   R +  D 
Sbjct: 225 TDDNVVAVAGASLVRYDKSGDGHYDL-------------------VSAMIKSVRGSDPDA 265

Query: 300 IEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
              +M +       P    R L+ +A + +G+  P+
Sbjct: 266 ALYWMARMLTAGEDPAFIARRLVILASEDIGLANPN 301


>gi|329724701|gb|EGG61207.1| recombination factor protein RarA [Staphylococcus epidermidis
           VCU144]
          Length = 423

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 65/326 (19%), Positives = 123/326 (37%), Gaps = 43/326 (13%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +   S +RP+ ++E   Q        +       +   L  ++F GPPG+GKT++A+ ++
Sbjct: 4   EPLASRMRPKNIDEIISQQHLVGPKGIIRRMVDTK--RLSSMIFYGPPGIGKTSIAKAIS 61

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
                 FR  +  V     D+  ++   +   + +L +DEIHRL    ++ L P +E+ +
Sbjct: 62  GSTQFKFRQLNA-VTNTKKDMQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGK 120

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + L+      P         SR  +               DR                  
Sbjct: 121 IVLIGATTSNPYHAINPAIRSRAQIFELYPLDQDDIRLALDR--------------AIND 166

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV--AHAKTITREIADAA 249
            +RG       V ++A    + +S+G  R A   L      A +   + + IT + A   
Sbjct: 167 KERGLSTYHPIVDEDAIEYFSTQSQGDVRSALNALELAVLSAHIGEENERHITLDDAKDC 226

Query: 250 LLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           L + A   DK G    D+  ++   ++  G  V              A+  L    +I+ 
Sbjct: 227 LQKGAFVSDKDGDMHYDV--MSAFQKSIRGSDV------------NAALHYLAR--LIEA 270

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
           G +      R L+ I+++ +G+  P+
Sbjct: 271 GDLPTIV--RRLLVISYEDVGLASPN 294


>gi|295428203|ref|ZP_06820835.1| ATPase [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|295128561|gb|EFG58195.1| ATPase [Staphylococcus aureus subsp. aureus EMRSA16]
          Length = 427

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 66/326 (20%), Positives = 124/326 (38%), Gaps = 43/326 (13%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +   S +RP+ ++E   Q        +       +   L  ++F GPPG+GKT++A+ ++
Sbjct: 7   EPLASRMRPKNIDEIISQQHLVGPRGIIRRMVDTK--KLTSMIFYGPPGIGKTSIAKAIS 64

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
                 FR  +  V     D+  ++   +   + +L +DEIHRL    ++ L P +E+ +
Sbjct: 65  GSTQYKFRQLNA-VTNTKKDMQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGK 123

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + L+      P         SR  +            PL D           E E     
Sbjct: 124 IVLIGATTSNPYHAINPAIRSRAQIFELY--------PLNDEDVRQALTRAIEDE----- 170

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK--TITREIADAA 249
            + G K     + ++A    + +S+G  R A   L      A+        +T + A   
Sbjct: 171 -ENGLKTYQPKIDEDAMTYFSTQSQGDVRSALNALELAVLSADNDKDGYRHVTLQDAKDC 229

Query: 250 LLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           L + A   DK G    D+  ++   ++  G  V              A+  L    +I+ 
Sbjct: 230 LQKGAFVSDKDGDMHYDV--MSAFQKSIRGSDV------------NAALHYLAR--LIEA 273

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
           G +      R L+ I+++ +G+  P+
Sbjct: 274 GDLPTIV--RRLLVISYEDIGLASPN 297


>gi|315503209|ref|YP_004082096.1| aaa atpase central domain protein [Micromonospora sp. L5]
 gi|315409828|gb|ADU07945.1| AAA ATPase central domain protein [Micromonospora sp. L5]
          Length = 496

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 76/328 (23%), Positives = 118/328 (35%), Gaps = 57/328 (17%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            +RP  ++E  GQ    +      +  +    A   V+  GPPG GKTT+A +VAR    
Sbjct: 37  RMRPAGIDELVGQEHLLAPGAPLRQLVE--GAAPMSVILWGPPGSGKTTIAHLVARATDR 94

Query: 81  NFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMEDFQ 133
            F + S  + A   D+ A++     +        VLFIDE+HR S   ++ L  A+ED  
Sbjct: 95  RFVAMSA-LTAGVKDVRAVIETARRQRRSGGPPTVLFIDEVHRFSKTQQDSLLAAVEDRT 153

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTR-----VGLLTNPLQDRFGIPIRLNFYEIE 186
           + L+    E P    +   LSR  L+           GLL   + D  G+   L   E E
Sbjct: 154 VTLLAATTENPYFSVISPLLSRCVLLTLQALDDDDVRGLLRRAVADERGLGGSLVLAE-E 212

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
               +V+        A+T   A      + GT RI   +  +  D A V           
Sbjct: 213 AEDHLVRLAGGDVRKALTALEAAAATATALGTGRIDLAVAEQAVDVAAVR---------- 262

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
                    D+ G    D+                    SA +   R +  D    ++ +
Sbjct: 263 --------YDRDGDAHYDV-------------------TSAFIKSMRGSDVDAALHWLAR 295

Query: 307 QGFIQRTPR--GRLLMPIAWQHLGIDIP 332
                   R   R L+  A + +G+  P
Sbjct: 296 MVVAGEDARFIARRLVIFASEDVGMADP 323


>gi|282916895|ref|ZP_06324653.1| ATPase [Staphylococcus aureus subsp. aureus D139]
 gi|283770701|ref|ZP_06343593.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus H19]
 gi|282319382|gb|EFB49734.1| ATPase [Staphylococcus aureus subsp. aureus D139]
 gi|283460848|gb|EFC07938.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus H19]
          Length = 424

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 66/326 (20%), Positives = 124/326 (38%), Gaps = 43/326 (13%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +   S +RP+ ++E   Q        +       +   L  ++F GPPG+GKT++A+ ++
Sbjct: 4   EPLASRMRPKNIDEIISQQHLVGPRGIIRRMVDTK--KLTSMIFYGPPGIGKTSIAKAIS 61

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
                 FR  +  V     D+  ++   +   + +L +DEIHRL    ++ L P +E+ +
Sbjct: 62  GSTQYKFRQLNA-VTNTKKDMQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGK 120

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + L+      P         SR  +            PL D           E E     
Sbjct: 121 IVLIGATTSNPYHAINPAIRSRAQIFELY--------PLNDEDVRQALTRAIEDE----- 167

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK--TITREIADAA 249
            + G K     + ++A    + +S+G  R A   L      A+        +T + A   
Sbjct: 168 -ENGLKTYQPKIDEDAMTYFSTQSQGDVRSALNALELAVLSADNDKDGYRQVTLQDAKDC 226

Query: 250 LLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           L + A   DK G    D+  ++   ++  G  V              A+  L    +I+ 
Sbjct: 227 LQKGAFVSDKDGDMHYDV--MSAFQKSIRGSDV------------NAALHYLAR--LIEA 270

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
           G +      R L+ I+++ +G+  P+
Sbjct: 271 GDLPTIV--RRLLVISYEDIGLASPN 294


>gi|282891290|ref|ZP_06299792.1| hypothetical protein pah_c050o063 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281498787|gb|EFB41104.1| hypothetical protein pah_c050o063 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 419

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 69/327 (21%), Positives = 118/327 (36%), Gaps = 54/327 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP +  E  GQ         FI     + + L  ++  GP G GKT++A++ A+
Sbjct: 4   PLSERLRPSSFTEIVGQPHLLGPDG-FITRTIKQGKPL-SIILWGPAGTGKTSIARLYAQ 61

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-----DVLFIDEIHRLSIIVEEILYPAMED 131
              + F+S S  + +   DL  ++   E+R      +LF+DEIHR +   ++   P +E 
Sbjct: 62  AFNIPFQSLSA-IFSGVADLKKVVKEAEERPLFKGTLLFVDEIHRFNKAQQDAFLPFLEK 120

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             + L+    E PS       LSR  ++          NPL D               L+
Sbjct: 121 GSIVLIGATVENPSFYLNDALLSRTRVLKL--------NPLDDI-------------ALE 159

Query: 190 TIVQRGA-KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
            ++QR   ++  L + D+A   +   S+G  R    LL  + +   +        +    
Sbjct: 160 QLLQRYETRVKKLNLDDQARRYLIQLSQGDGRYLYNLLENIENVESIEPIDVQRLQTILQ 219

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           A      D+      +L                   ISA     R +  D    +  +  
Sbjct: 220 A-RSPVYDQASDQHYNL-------------------ISALHKAIRGSDPDAALYWFARML 259

Query: 309 FIQRTP--RGRLLMPIAWQHLGIDIPH 333
                P    R L+ +A + +G   P 
Sbjct: 260 NGGEDPLYLARRLIRVASEDVGQADPQ 286


>gi|325689545|gb|EGD31550.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
           SK115]
          Length = 422

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 64/326 (19%), Positives = 117/326 (35%), Gaps = 42/326 (12%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            +     +RP  +++  GQ       K+     +A    L  ++  GPPG+GKT++A  +
Sbjct: 2   PENLALRMRPTDIDQIIGQQHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           A      FR+ +  V +K      A         VL +DEIHRL    ++ L P +E   
Sbjct: 60  AGTTKFAFRTFNATVDSKKRLQEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGL 119

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + ++    E P         SR  +            PL +             +     
Sbjct: 120 VIMIGATTENPFFSVTPAIRSRVQIFEL--------EPLSNDDIRTAIQLALTDK----- 166

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI--TREIADAA 249
            +RG     + + +EA   IA+ + G  R A   L                 T ++ + +
Sbjct: 167 -ERGFD-FPVELDEEALDFIAISTNGDLRSAYNSLDLAVLSTPEDGKGIRHITLDVMENS 224

Query: 250 LLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           L +    +DK G    D+  L+ + ++  G  V              ++       +++ 
Sbjct: 225 LQKSYITMDKDGDGHYDV--LSALQKSIRGSDV------------NASLHYAAR--LVEA 268

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
           G +      R L  IA++ +G+  P 
Sbjct: 269 GDLP--SLARRLTVIAYEDIGLANPD 292


>gi|239917777|ref|YP_002957335.1| Recombination protein MgsA [Micrococcus luteus NCTC 2665]
 gi|281413730|ref|ZP_06245472.1| recombination factor protein RarA [Micrococcus luteus NCTC 2665]
 gi|239838984|gb|ACS30781.1| Recombination protein MgsA [Micrococcus luteus NCTC 2665]
          Length = 465

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 74/326 (22%), Positives = 122/326 (37%), Gaps = 39/326 (11%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEA---LDHVLFVGPPGLGKTTLAQVVARE 77
            +RPRTL++  GQ           + A+   ++      V+  GPPG+GKTTLA V+AR 
Sbjct: 33  RMRPRTLDDVLGQRHLMRPGSPLRKLAEPDPDSAAGPSSVILYGPPGIGKTTLAHVIARA 92

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAME 130
            G  F   S  + A   D+  ++   +          VLF+DEIHR S   ++ L P +E
Sbjct: 93  PGRTFTELSA-ITAGVKDVRQVMEQAQRERDLYGRTTVLFLDEIHRFSKAQQDALLPGVE 151

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +  + L+    E PS   +            +  + L   PL D   + +       E  
Sbjct: 152 NRWVVLVAATTENPSFSVIAP--------LLSRSLLLTLRPLTDDDIVGLLDRAVTQE-- 201

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
                RG     + + D+A   +   + G  R A  +L      A     +         
Sbjct: 202 -----RGLNG-AVVLQDDARDYLVRMAGGDARRALTVLEAAAGVALDKAREAGRAGEGAV 255

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           A+     ++     +D      + R    G    + ISA +   R +  D    Y+ +  
Sbjct: 256 AVT----EEDAAQAMDHH----VQRYDKDGDQHYDVISAFIKSIRGSDVDASMHYLARML 307

Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIP 332
                PR   R L+  A + +G+  P
Sbjct: 308 EAGEDPRFIARRLIISASEDVGMADP 333


>gi|332246193|ref|XP_003272237.1| PREDICTED: ATPase WRNIP1 isoform 2 [Nomascus leucogenys]
          Length = 592

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 64/340 (18%), Positives = 121/340 (35%), Gaps = 31/340 (9%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           R + Q       +RP TL+++ GQ  A     +     +     +  ++  GPPG GKTT
Sbjct: 192 RQMLQGKPLADTMRPDTLQDYFGQSRAVGQDTLLRSLLETNE--IPSLILWGPPGCGKTT 249

Query: 70  LAQVVARELGVNFRST--SGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSII 120
           LA ++A     +           AK  D+  ++   +        + +LFIDEIHR +  
Sbjct: 250 LAHIIANNSKKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKS 309

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++   P +E   + L+    E PS +     LSR  +I            +  R    +
Sbjct: 310 QQDTFLPHVECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAINSL 369

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLA---VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
            ++  +       +   +  +      + D+A   +A  S G  R     L+     A +
Sbjct: 370 GIHVLDSSRPTDPLSHSSNSSSEPAMFIEDKAVDTLAYLSDGDARAGLNGLQLAV-LARL 428

Query: 236 AHAKTITRE-----IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
           +  K   ++          L+     K G  +  + Y      ++         ISA   
Sbjct: 429 SSRKMFCKKSGQSYSPSRVLITENDVKEGLQRSHILYDRAGEEHYNC-------ISALHK 481

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLG 328
             R + ++    ++ +       P    R L+  A + +G
Sbjct: 482 SMRGSDQNASLYWLARMLEGGEDPLYVARRLVRFASEDIG 521


>gi|150015980|ref|YP_001308234.1| recombination factor protein RarA [Clostridium beijerinckii NCIMB
           8052]
 gi|149902445|gb|ABR33278.1| AAA ATPase, central domain protein [Clostridium beijerinckii NCIMB
           8052]
          Length = 414

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 69/330 (20%), Positives = 126/330 (38%), Gaps = 56/330 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
               L+RP  LE+F GQ       K          + + + +F GPPG GKTTLA ++A 
Sbjct: 3   PLADLMRPNKLEDFVGQQHILGQGKPLYNLI--AGKNICNCIFYGPPGTGKTTLANIMAN 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE-----DRDVLFIDEIHRLSIIVEEILYPAMED 131
            +   F   +  V A   D+  +  N++     +  VL+IDE+   +   ++ L   +ED
Sbjct: 61  YVDKKFYKLNATV-ASVKDIQDITNNIDSLLNYNGVVLYIDELQHFNKKQQQALLEFIED 119

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
            ++ L+    E P     K  +SR                                 D+ 
Sbjct: 120 GRITLIASTTENPYFVIHKAIISRCN---------------------IFSFKPLTTGDII 158

Query: 190 TIVQRGAKLT-----GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
             ++R  +        +  +DEA   I   S+G  R A  +L    + ++V   + I+ E
Sbjct: 159 VGLKRSIQKLIDEGIEIEYSDEALEYIGEISQGDYRKAYNILELAVN-SQVKQVRVISSE 217

Query: 245 IADA-ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
             ++     +  D  G +  +   L+ + ++  G            S+P  A+  L    
Sbjct: 218 YIESLGQSSMRADSSGDEFYN--LLSALQKSIRG------------SDPNAAVHYLAR-- 261

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +I+ G +      R +  IA + +G+  P+
Sbjct: 262 LIKGGNLTAII--RRISVIAAEDIGLAFPN 289


>gi|21283306|ref|NP_646394.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus MW2]
 gi|49486460|ref|YP_043681.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|258424053|ref|ZP_05686935.1| recombination factor protein RarA [Staphylococcus aureus A9635]
 gi|297207652|ref|ZP_06924087.1| AAA family ATPase [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300911734|ref|ZP_07129177.1| AAA family ATPase [Staphylococcus aureus subsp. aureus TCH70]
 gi|21204746|dbj|BAB95442.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49244903|emb|CAG43364.1| putative ATPase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|257845674|gb|EEV69706.1| recombination factor protein RarA [Staphylococcus aureus A9635]
 gi|283470904|emb|CAQ50115.1| ATPase, AAA family [Staphylococcus aureus subsp. aureus ST398]
 gi|296887669|gb|EFH26567.1| AAA family ATPase [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300885980|gb|EFK81182.1| AAA family ATPase [Staphylococcus aureus subsp. aureus TCH70]
 gi|329733071|gb|EGG69408.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 424

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 66/326 (20%), Positives = 124/326 (38%), Gaps = 43/326 (13%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +   S +RP+ ++E   Q        +       +   L  ++F GPPG+GKT++A+ ++
Sbjct: 4   EPLASRMRPKNIDEIISQQHLVGPRGIIRRMVDTK--KLTSMIFYGPPGIGKTSIAKAIS 61

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
                 FR  +  V     D+  ++   +   + +L +DEIHRL    ++ L P +E+ +
Sbjct: 62  GSTQYKFRQLNA-VTNTKKDMQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGK 120

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + L+      P         SR  +            PL D           E E     
Sbjct: 121 IVLIGATTSNPYHAINPAIRSRAQIFELY--------PLNDEDVRQALTRAIEDE----- 167

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK--TITREIADAA 249
            + G K     + ++A    + +S+G  R A   L      A+        +T + A   
Sbjct: 168 -ENGLKTYQPKIDEDAMTYFSTQSQGDVRSALNALELAVLSADNDKDGYRHVTLQDAKDC 226

Query: 250 LLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           L + A   DK G    D+  ++   ++  G  V              A+  L    +I+ 
Sbjct: 227 LQKGAFVSDKDGDMHYDV--MSAFQKSIRGSDV------------NAALHYLAR--LIEA 270

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
           G +      R L+ I+++ +G+  P+
Sbjct: 271 GDLPTIV--RRLLVISYEDIGLASPN 294


>gi|300811355|ref|ZP_07091852.1| recombination factor protein RarA [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300497719|gb|EFK32744.1| recombination factor protein RarA [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 430

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 67/323 (20%), Positives = 119/323 (36%), Gaps = 35/323 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+++++  GQ       K+     +AR   L  ++  GPPG+GKT++A  +A 
Sbjct: 3   PLAYRMRPQSIDQVVGQQHLVGPKKIIRRMVEARQ--LSSMILYGPPGIGKTSIASAIAG 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLT--NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
                FR  +        +L+ +     +    VL +DEIHRL+ + ++ L P +E  Q+
Sbjct: 61  SSKYAFRQLNAAT-DGQKELSQVAAEGKMSGTVVLLLDEIHRLNKVKQDFLLPLLESGQV 119

Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            ++    E P         SR  +            PL +   +         E      
Sbjct: 120 IMIGATTENPYLAISPAIRSRCQIFEL--------KPLTEEEILTAVDRALTDE------ 165

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           +RG       +T EA   +A +  G  R     L      A ++  + +  E  DA    
Sbjct: 166 ERGLGKYHAKLTKEAGEFLAQKGNGDLRATLNSLE----LAVLSTKQELEAEGKDA---- 217

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY---MIQQGF 309
                +  D +       I      G    + +SA     R +  D    Y   +++ G 
Sbjct: 218 -FSFTVTLDDMADSLQMKIQNFDADGDGHYDLLSAFQKSIRGSDTDAGLHYLGRLLESGD 276

Query: 310 IQRTPRGRLLMPIAWQHLGIDIP 332
           +      R L  IA++ +G+  P
Sbjct: 277 LVSIC--RRLSVIAYEDIGLANP 297


>gi|296117814|ref|ZP_06836397.1| replication-associated recombination protein A [Corynebacterium
           ammoniagenes DSM 20306]
 gi|295969045|gb|EFG82287.1| replication-associated recombination protein A [Corynebacterium
           ammoniagenes DSM 20306]
          Length = 448

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 80/335 (23%), Positives = 125/335 (37%), Gaps = 50/335 (14%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L+E  GQ    +  K      +   EA   V+  GPPG GKTT+A ++A  +G N
Sbjct: 1   MRPQQLDEVLGQDHLLAPGKPLRRLVEGSGEA--SVILYGPPGTGKTTIASLIASAMGQN 58

Query: 82  FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F   S  + +    +  ++T+         R VLFIDE+HR S   ++ L  A+E+  + 
Sbjct: 59  FVGLSA-LDSGVKQVREVITHARQEAIRGVRTVLFIDEVHRFSKTQQDALLAAVENRTVL 117

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           L+    E PS   V   LSR  L+   +      + L DR       +   ++   TI  
Sbjct: 118 LVAATTENPSFSVVAPLLSRSLLLQLNSLEPEHISELIDR----AIESPRGLDGRITIAD 173

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
              K   +                   +AG   RRV  + E A          D A    
Sbjct: 174 DAKKQLTM-------------------LAGGDARRVLTYLEAAAETAEDAASEDTATDSE 214

Query: 254 AIDKMGFDQ--------------LDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           A D  G +               L+      + R    G    + +SA +   R +  D 
Sbjct: 215 AEDHTGAETEQPEAAKPVLTSEILNASVNRAVVRYDRDGDQHYDVVSAFIKSIRGSDVDA 274

Query: 300 IEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
              Y+ +       PR   R L+  A + +G+  P
Sbjct: 275 ALHYLARMVEAGEDPRFIARRLIVHASEDIGMADP 309


>gi|115938214|ref|XP_795793.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115967858|ref|XP_001182557.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 672

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 67/331 (20%), Positives = 117/331 (35%), Gaps = 31/331 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACS---NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
                +RP T++   GQ +A      L+  ++        +  ++F GPPG GKT+LA V
Sbjct: 271 PLAERMRPYTMDTLIGQNKALGATGTLRRLLD-----VGNIPSMIFWGPPGCGKTSLANV 325

Query: 74  VARE---LGVNFRSTSGPVIAKAGDLAALL-------TNLEDRDVLFIDEIHRLSIIVEE 123
           +AR+      +   T     +   D+ + +            + +LFIDEIHR +   ++
Sbjct: 326 IARQAKVRNTHRFITFSATTSNVSDVKSAVEIARNEQRMYRRKTILFIDEIHRFNKTQQD 385

Query: 124 ILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
                +E+  + L+    E PS R     LSR  ++            + +R     ++ 
Sbjct: 386 TFLLHVENGTIILIGATTENPSFRVNSALLSRCRVVVLEKLSPESIMLILERALKEGQVG 445

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
               E L          T +++  EA C +A    G  R A   L+ V D A+ +     
Sbjct: 446 IENAEHLHK----TCWSTTISIEREALCLLANLCDGDARSALNSLQMVLDVAKGSTGG-- 499

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
                  A   L    +  DQ+              G       SA     R +  +   
Sbjct: 500 ---QQADASKVLRSSVITIDQIRDSLQRSHISYDKSGEEHYNCASALQKSIRASDANAAV 556

Query: 302 PYMIQQGFIQRTPR--GRLLMPIAWQHLGID 330
            ++ +       P    R L+  A + L + 
Sbjct: 557 YWLGRMLVGGEDPLYIARRLVVCASEDLNLA 587


>gi|23015800|ref|ZP_00055567.1| COG2256: ATPase related to the helicase subunit of the Holliday
           junction resolvase [Magnetospirillum magnetotacticum
           MS-1]
          Length = 430

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 73/338 (21%), Positives = 116/338 (34%), Gaps = 62/338 (18%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACS---NLKVFIEAAKARAEALDHVLFVGPPGLGK 67
             S +      LRP  L+E  GQ    +    L   + A +     L  V+  GPPG GK
Sbjct: 7   TPSSDKPLAERLRPGALDEVVGQGHLLAATAPLGRMLAAGR-----LASVILWGPPGCGK 61

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIV 121
           TT+A+++A ++G+ F   S  V +   DL  +    E R       +LF+DEIHR +   
Sbjct: 62  TTIARLLAEKVGLYFEPLSA-VFSGVADLRKVFDAAEKRKQTGRSTLLFVDEIHRFNRAQ 120

Query: 122 EEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           ++   P +E+  + L+    E PS       LSR  ++            L  +      
Sbjct: 121 QDGFLPYVENGTVVLVGATTENPSFELNGALLSRCQVLVLHRLDDGALEDLLVK------ 174

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
                    +  + R        +  +A   +   + G  R    LL    D A +    
Sbjct: 175 --------AEADLGRAL-----PLDADARAAMRAMADGDGRY---LLNLAEDLAMLPPEP 218

Query: 240 TITREIADAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
            +       A+ R   A DK      +L                   ISA     R +  
Sbjct: 219 VLDAAGLAQAVQRRAPAYDKDREGHYNL-------------------ISALHKSLRGSDT 259

Query: 298 DLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           D    +M +       P    R L   A + +G+  P 
Sbjct: 260 DAALYWMARMLEGGEDPLFIARRLTRFAVEDIGLADPQ 297


>gi|322700463|gb|EFY92218.1| DNA replication ATPase [Metarhizium acridum CQMa 102]
          Length = 1289

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 65/334 (19%), Positives = 110/334 (32%), Gaps = 67/334 (20%)

Query: 17   ADISLLRPRTLEEFTGQVEAC--SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
                 +RP TL++  GQ        L+  IE  +     +  ++  G  G GKTT+A+ +
Sbjct: 876  PLAERMRPTTLDDVCGQDLVGPNGVLRGLIETNR-----VPSMILWGASGTGKTTIARCI 930

Query: 75   ARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYP 127
            A  +G  F   +        +   L             R ++F DEIHR +   +++   
Sbjct: 931  AHMVGSRFVELNA-TSTGVSECKKLFQEAASELSLTGRRTIIFCDEIHRFNKAQQDVFLK 989

Query: 128  AMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             +E   + L+    E PS +     LSR       +                       +
Sbjct: 990  PVEAGTVTLIGATTENPSFKVASALLSRCRTFTLRS---------------------LTV 1028

Query: 186  EDLKTIVQRGAKLTGLAV------TDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
            ED+  I++R                +E    +A  S G  R A  LL             
Sbjct: 1029 EDIMGILKRARAAEEAVYPPTPLIDEEMMGYLARFSDGDARTALNLLEVALSLTTREG-- 1086

Query: 240  TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
             IT+E   ++L +  +   G DQ                    ++ISA     R    D 
Sbjct: 1087 -ITKEDIKSSLTKTLVYDRGGDQH------------------YDSISAFHKSVRGNDADA 1127

Query: 300  IEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
               Y+ +       P    R ++ IA + +G+  
Sbjct: 1128 ALYYLARMLQSGEDPLFIARRMVVIASEDVGLAD 1161


>gi|315222482|ref|ZP_07864380.1| recombination factor protein RarA [Streptococcus anginosus F0211]
 gi|315188450|gb|EFU22167.1| recombination factor protein RarA [Streptococcus anginosus F0211]
          Length = 423

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 66/326 (20%), Positives = 118/326 (36%), Gaps = 42/326 (12%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            D     +RP+ + +  GQ       K+     +A    L  ++  GPPG+GKT++A  +
Sbjct: 2   PDNLAIRMRPKNINQVIGQKHLVGEGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           A      FR+ +  V +K      A         +L +DEIHRL    ++ L P +E+  
Sbjct: 60  AGTTKFAFRTFNATVDSKKRLQEIAEEAKFSGGLMLLLDEIHRLDKTKQDFLLPLLENGL 119

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + ++    E P         SR  +                            I+   T 
Sbjct: 120 IIMIGATTENPFFSVTPAIRSRVQIFELEPLTNDDIKQ--------------AIQTALTD 165

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA--EVAHAKTITREIADAA 249
            +RG     + + D+A   I   + G  R A   L         +    + IT +I + +
Sbjct: 166 TERGFD-FPVQLDDDALDFITTSTNGDLRSAFNSLDLAVLSTKEDTEGVRHITLDIMENS 224

Query: 250 LLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           L +    +DK G    D+  L+ + ++  G  V              ++       +I+ 
Sbjct: 225 LQKSYITMDKDGDGHYDV--LSALQKSIRGSDV------------NASLHYAAR--LIEA 268

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
           G +      R L  IA++ +G+  P 
Sbjct: 269 GDLP--SLARRLTVIAYEDIGLANPD 292


>gi|227431371|ref|ZP_03913423.1| crossover junction endodeoxyribonuclease [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
 gi|227352881|gb|EEJ43055.1| crossover junction endodeoxyribonuclease [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
          Length = 428

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 70/327 (21%), Positives = 122/327 (37%), Gaps = 45/327 (13%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           ++     +RP  +EE  GQ       K+      A    L  ++  GPPG GKT++A  +
Sbjct: 3   QEPLAYRMRPTKIEEIVGQQHLVGEGKIIWRMVAAH--RLSSMILYGPPGTGKTSIASAI 60

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           A      FR  +    ++  DL  ++   +     VL +DEIHRL+ I ++ L P +E  
Sbjct: 61  AGSSKYAFRMLNAATDSQ-KDLQIVVEEAKMSGTVVLLLDEIHRLNKIKQDFLLPHLESG 119

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVG-LLTNPLQDRFGIPIRLNFYEIEDLK 189
            + L+    E P         SR  +    +     +TN                ++   
Sbjct: 120 AIILIGATTENPYINVTPAIRSRTQIFEVNSLSETDITNA---------------VKRAI 164

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR--DFAEVAHAKTITREIAD 247
           T  ++G     + + D A  +++  + G  R A   L        A+      I+  I +
Sbjct: 165 TDKEKGLGQYNIVLDDNAMLQLSRATNGDLRSALNGLELAVLSTKADKKGVVHISLPIIE 224

Query: 248 AALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
             + R A+  DK G    D+  ++ + ++  G         A L      IE    P + 
Sbjct: 225 ETVQRKALSADKDGDAHYDV--ISALQKSIRGSDTD-----AALHYAARIIESGDLPIL- 276

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIP 332
                      R L  IA++ +G+  P
Sbjct: 277 ----------ARRLTVIAYEDIGLANP 293


>gi|239631709|ref|ZP_04674740.1| recombination factor protein RarA [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|239526174|gb|EEQ65175.1| recombination factor protein RarA [Lactobacillus paracasei subsp.
           paracasei 8700:2]
          Length = 423

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 65/318 (20%), Positives = 107/318 (33%), Gaps = 41/318 (12%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L+E  GQ +     ++      A    L  ++  GPPG GKT++A  +A      
Sbjct: 1   MRPQNLDEVVGQQDLVGPDRIIRRMVSAH--RLSSMILYGPPGTGKTSIASAIAGSTKYA 58

Query: 82  FRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--V 138
           FR  +     K    + A    +    +L +DEIHRL    ++ L P +E  ++ L+   
Sbjct: 59  FRILNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPLLESGRIVLIGAT 118

Query: 139 GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKL 198
            E P         SR  +                R                   +RG   
Sbjct: 119 TENPYMNIQPAIRSRTQIFQVKPLTPDDITSAIKR--------------ALADHKRGLGD 164

Query: 199 TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE--IADAALLR--LA 254
             + +  +A   +   + G  R A   L         +   TIT +      +L +  LA
Sbjct: 165 YQVDLQPDALDYLTHATNGDLRSALNGLELAVLSTPASDDGTITIDLTTIQQSLQKPALA 224

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
            D  G    D      I   F     G +  +A                +I  G +    
Sbjct: 225 GDTNGDAHYD------IISAFQKSIRGSDADAALH----------YLARLIAIGDLNSIT 268

Query: 315 RGRLLMPIAWQHLGIDIP 332
             R L+ IA++ +G+  P
Sbjct: 269 --RRLLVIAYEDIGLANP 284


>gi|308189856|ref|YP_003922787.1| hypothetical protein MFE_02970 [Mycoplasma fermentans JER]
 gi|307624598|gb|ADN68903.1| hypothetical protein MFE_02970 [Mycoplasma fermentans JER]
          Length = 220

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 66/211 (31%), Positives = 117/211 (55%)

Query: 117 LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
           ++  VEEI+Y AMED+++D+++G   +++ +++NL  FTLI ATT++ LLT PL+DRFG 
Sbjct: 1   MNKNVEEIIYNAMEDYKIDIIIGPEGNSKVMRMNLKPFTLIGATTKINLLTQPLKDRFGF 60

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
             RL+ Y  +++  I++    +  +         IA  S+GTPR+A  LL+R+ DF+   
Sbjct: 61  IARLSQYNEKEIAKILENSEMVLNIKSERGVIPLIAKYSKGTPRVANHLLKRILDFSIQN 120

Query: 237 HAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAI 296
               IT++   +    L +  +G  +  + YL ++   F      I++I+  L+  RD +
Sbjct: 121 KEDEITKKTTYSTFKHLELYDLGLGREHIEYLKVLNETFENKFAAIDSIAGVLNIDRDIL 180

Query: 297 EDLIEPYMIQQGFIQRTPRGRLLMPIAWQHL 327
              +EP ++    I + PRGR +      +L
Sbjct: 181 IYELEPLLLYLKLIAKGPRGRKITTKGIDYL 211


>gi|193212966|ref|YP_001998919.1| recombination factor protein RarA [Chlorobaculum parvum NCIB 8327]
 gi|193086443|gb|ACF11719.1| AAA ATPase central domain protein [Chlorobaculum parvum NCIB 8327]
          Length = 452

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 76/334 (22%), Positives = 121/334 (36%), Gaps = 61/334 (18%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RPR+++E  GQ             +      +  ++F GPPG GKTTLA++ A 
Sbjct: 29  PLAERVRPRSIDELFGQEHLVGPGGPVR--SYLEQGRIPSMIFWGPPGSGKTTLAEICAG 86

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED-RDV------LFIDEIHRLSIIVEEILYPAM 129
            L   F   S    A   D+  +L   +  R +      LFIDEIHR +   ++ L  A+
Sbjct: 87  SLNYRFEQLSA-TDAGVKDVRRVLEVAQKSRSIDGRQMLLFIDEIHRFNKAQQDTLLHAI 145

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E   + L+    E PS    +  LSR  +         + NPL                +
Sbjct: 146 EQGLIVLIGATTENPSFEVNRALLSRMQV--------YILNPL-------------SEAE 184

Query: 188 LKTIVQRGAK---LTGLAVTDEAACEIAM-RSRGTPRIAGRLLRRVRDFAEVAHAK-TIT 242
           ++ +V+R          A  +    E  +  + G  R A   L      A +  A   I 
Sbjct: 185 VQRVVERAIGSDPQLAAAGVEVRDMEFLLAYAAGDARKALNALEAALSLAPLGTAPMVID 244

Query: 243 REIADAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           R++ + AL     A DK G    D                   T+SA +   R +  D  
Sbjct: 245 RKLLEQALQHRAPAYDKGGEAHYD-------------------TVSAFIKSMRGSDPDAA 285

Query: 301 EPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
             +M +       P+   R ++  A + +G   P
Sbjct: 286 LFWMAKMIDGGEDPKFIARRMVIFASEDIGNADP 319


>gi|148652069|ref|YP_001279162.1| recombination factor protein RarA [Psychrobacter sp. PRwf-1]
 gi|148571153|gb|ABQ93212.1| Recombination protein MgsA [Psychrobacter sp. PRwf-1]
          Length = 439

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 71/337 (21%), Positives = 123/337 (36%), Gaps = 63/337 (18%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNL---KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
                LRP+ L+E  GQ    +     + F+E        L  ++  G  G+GKTT+A +
Sbjct: 14  PLAQRLRPKRLDEVIGQTHLLAPGAPIQRFVE-----HGHLPSLILHGEAGIGKTTIAML 68

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLED---------RDVLFIDEIHRLSIIVEEI 124
           +A  +G  F   S  +      L  +L                V+FIDEIHR +   ++ 
Sbjct: 69  LADAVGRPFYPLSA-INTGVKQLREVLDAGSSSGQGGLDFASPVVFIDEIHRFNKAQQDA 127

Query: 125 LYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RFGIPIRLN 181
           L  A+E   + L+    E PS       LSR  +            PL D + G  ++  
Sbjct: 128 LLGAVESGDITLIGATTENPSFSVNNALLSRCQVYRL--------QPLDDTQIGELLQRA 179

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
             + E L  +          ++  +A  +IA  ++G  R A  LL      ++ +    +
Sbjct: 180 LSQDEFLSQL----------SIDLQALPQIANLAQGDARKALNLLEMAVQASDHSKQPIV 229

Query: 242 TREIADAALLR---LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
             +   +++ +      DK G    D+                   ISA +   R +  D
Sbjct: 230 IDDALLSSVAQTTLQRYDKDGDQHYDI-------------------ISAMIKSVRGSDPD 270

Query: 299 LIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
               +M +       P    R L+ +A + +G   P+
Sbjct: 271 AALYWMARMLVAGEPPEFIARRLVILASEDIGNANPN 307


>gi|49483872|ref|YP_041096.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|257425751|ref|ZP_05602175.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257428411|ref|ZP_05604809.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257431049|ref|ZP_05607428.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257433735|ref|ZP_05610093.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257436650|ref|ZP_05612694.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus M876]
 gi|282904207|ref|ZP_06312095.1| ATPase, AAA family [Staphylococcus aureus subsp. aureus C160]
 gi|282906033|ref|ZP_06313888.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282908947|ref|ZP_06316765.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282911264|ref|ZP_06319066.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282914432|ref|ZP_06322218.1| ATPase, AAA family [Staphylococcus aureus subsp. aureus M899]
 gi|282919401|ref|ZP_06327136.1| ATPase [Staphylococcus aureus subsp. aureus C427]
 gi|282924726|ref|ZP_06332394.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           C101]
 gi|283958387|ref|ZP_06375838.1| ATPase, AAA family [Staphylococcus aureus subsp. aureus A017934/97]
 gi|293503506|ref|ZP_06667353.1| ATPase [Staphylococcus aureus subsp. aureus 58-424]
 gi|293510524|ref|ZP_06669230.1| AAA domain-containing protein yrvN [Staphylococcus aureus subsp.
           aureus M809]
 gi|293531064|ref|ZP_06671746.1| ATPase, AAA family [Staphylococcus aureus subsp. aureus M1015]
 gi|297590829|ref|ZP_06949467.1| AAA family ATPase [Staphylococcus aureus subsp. aureus MN8]
 gi|49242001|emb|CAG40698.1| putative ATPase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257271445|gb|EEV03591.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257275252|gb|EEV06739.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257278252|gb|EEV08894.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257281828|gb|EEV11965.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257284001|gb|EEV14124.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus M876]
 gi|282313561|gb|EFB43956.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           C101]
 gi|282317211|gb|EFB47585.1| ATPase [Staphylococcus aureus subsp. aureus C427]
 gi|282321613|gb|EFB51938.1| ATPase, AAA family [Staphylococcus aureus subsp. aureus M899]
 gi|282324959|gb|EFB55269.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282327211|gb|EFB57506.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282331325|gb|EFB60839.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282595825|gb|EFC00789.1| ATPase, AAA family [Staphylococcus aureus subsp. aureus C160]
 gi|283790536|gb|EFC29353.1| ATPase, AAA family [Staphylococcus aureus subsp. aureus A017934/97]
 gi|290920332|gb|EFD97398.1| ATPase, AAA family [Staphylococcus aureus subsp. aureus M1015]
 gi|291095172|gb|EFE25437.1| ATPase [Staphylococcus aureus subsp. aureus 58-424]
 gi|291466888|gb|EFF09408.1| AAA domain-containing protein yrvN [Staphylococcus aureus subsp.
           aureus M809]
 gi|297575715|gb|EFH94431.1| AAA family ATPase [Staphylococcus aureus subsp. aureus MN8]
 gi|312437905|gb|ADQ76976.1| AAA family ATPase [Staphylococcus aureus subsp. aureus TCH60]
 gi|315195528|gb|EFU25915.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus CGS00]
          Length = 424

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 66/326 (20%), Positives = 124/326 (38%), Gaps = 43/326 (13%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +   S +RP+ ++E   Q        +       +   L  ++F GPPG+GKT++A+ ++
Sbjct: 4   EPLASRMRPKNIDEIISQQHLVGPRGIIRRMVDTK--KLTSMIFYGPPGIGKTSIAKAIS 61

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
                 FR  +  V     D+  ++   +   + +L +DEIHRL    ++ L P +E+ +
Sbjct: 62  GSTQYKFRQLNA-VTNTKKDMQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGK 120

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + L+      P         SR  +            PL D           E E     
Sbjct: 121 IVLIGATTSNPYHAINPAIRSRAQIFELY--------PLNDEDVRQALTRAIEDE----- 167

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK--TITREIADAA 249
            + G K     + ++A    + +S+G  R A   L      A+        +T + A   
Sbjct: 168 -ENGLKTYQPKIDEDAMTYFSTQSQGDVRSALNALELAVLSADNDKDGYRHVTLQDAKDC 226

Query: 250 LLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           L + A   DK G    D+  ++   ++  G  V              A+  L    +I+ 
Sbjct: 227 LQKGAFVSDKDGDMHYDV--MSAFQKSIRGSDV------------NAALHYLAR--LIEA 270

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
           G +      R L+ I+++ +G+  P+
Sbjct: 271 GDLPTIV--RRLLVISYEDIGLASPN 294


>gi|118497986|ref|YP_899036.1| ATPase, AAA family [Francisella tularensis subsp. novicida U112]
 gi|194323209|ref|ZP_03056993.1| ATPase, AAA family protein [Francisella tularensis subsp. novicida
           FTE]
 gi|118423892|gb|ABK90282.1| AAA family-ATPase [Francisella novicida U112]
 gi|194322573|gb|EDX20053.1| ATPase, AAA family protein [Francisella tularensis subsp. novicida
           FTE]
          Length = 412

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 66/323 (20%), Positives = 121/323 (37%), Gaps = 41/323 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP++++E  GQ    S   +  +      + +  ++  G PG+GKT+LA+++A 
Sbjct: 5   PLAARIRPQSIDEIVGQEHLLSQHGILTK--ILAGDGICSLVLCGKPGVGKTSLARIIAS 62

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQL 134
              + F   S  V +   D+  L+T+ +  D  VLF+DEIHR +   ++IL P +E  ++
Sbjct: 63  SKKLEFFELSA-VDSGVKDIKKLITDNQHLDSFVLFLDEIHRFNKSQQDILLPYVESGKI 121

Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            L+    E P+       +SR  ++       + T  L ++          + E L    
Sbjct: 122 ILIGATTENPTYYLNDALVSRLFILRLKRLSLVATQKLIEK-------TLSQDEVLAKH- 173

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
                     + D     +   S G  R    LL R+   +       + +E+ D A+  
Sbjct: 174 -------KFKIDDGLYNSMHNYSEGDCRKILNLLERMFLISTRGDEIYLNKELFDQAVGE 226

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
            + D                     G    E +SA     R    D    ++        
Sbjct: 227 TSRD-----------------FHREGKEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGV 269

Query: 313 TPR--GRLLMPIAWQHLGIDIPH 333
            P    R ++ IA + +G   P 
Sbjct: 270 DPLVIARRMLCIASEDIGNADPQ 292


>gi|297289911|ref|XP_002803619.1| PREDICTED: ATPase WRNIP1 [Macaca mulatta]
          Length = 619

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 64/340 (18%), Positives = 121/340 (35%), Gaps = 31/340 (9%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           R + Q       +RP TL+++ GQ  A     +     +     +  ++  GPPG GKTT
Sbjct: 219 RQMLQGKPLADTMRPDTLQDYFGQSRAVGQDTLLRSLLETNE--IPSLILWGPPGCGKTT 276

Query: 70  LAQVVARELGVNFRST--SGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSII 120
           LA ++A     +           AK  D+  ++   +        + +LFIDEIHR +  
Sbjct: 277 LAHIIANNSKKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKS 336

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++   P +E   + L+    E PS +     LSR  +I            +  R    +
Sbjct: 337 QQDTFLPHVECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAINSL 396

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLA---VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
            ++  +       +   +  +      + D+A   +A  S G  R     L+     A +
Sbjct: 397 GIHVLDSSRPTDPLSHSSNSSSEPAMFIEDKAVDTLAYLSDGDARAGLNGLQLAV-LARL 455

Query: 236 AHAKTITRE-----IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
           +  K   ++          L+     K G  +  + Y      ++         ISA   
Sbjct: 456 SSRKMFCKKSGQSYSPSRVLITENDVKEGLQRSHILYDRAGEEHYNC-------ISALHK 508

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLG 328
             R + ++    ++ +       P    R L+  A + +G
Sbjct: 509 SMRGSDQNASLYWLARMLEGGEDPLYVARRLVRFASEDIG 548


>gi|283458016|ref|YP_003362623.1| ATPase [Rothia mucilaginosa DY-18]
 gi|283134038|dbj|BAI64803.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [Rothia mucilaginosa DY-18]
          Length = 513

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 78/349 (22%), Positives = 119/349 (34%), Gaps = 36/349 (10%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEA--LDHVLFVGPPGLG 66
           S   +        +RPRT++E  GQ    +        A   A       V+  GPPG G
Sbjct: 39  SARSASRAPLAVRMRPRTIDEVLGQEHLLTPGAPLRVLAGENAGPAGPSSVILYGPPGTG 98

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSI 119
           KTTLA V+AR  G  F   S  + A   D+ A++              VLF+DEIHR + 
Sbjct: 99  KTTLAHVIARAPGRKFVELSA-ITAGVKDVRAVMDQALLDRDMYGTTTVLFLDEIHRFTK 157

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR---- 173
             ++ L P +E+  + L+    E PS   +   LSR  L+   +        L DR    
Sbjct: 158 AQQDALLPGVENRWVILVAATTENPSFSIISPLLSRSLLLRVHSLEQSDIEQLIDRALAD 217

Query: 174 ---FGIPIRLNFYEIEDLKTI----VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
              F     ++      L  +     +R       A     +      S  + R A  L 
Sbjct: 218 PRGFDGAAVIDEDARAHLAAVSGGDARRSLTSLEAAAAIAFSE-AEQASAESARSAEDLA 276

Query: 227 RRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETIS 286
                  E     T         L          + +D        R    G    + +S
Sbjct: 277 DLADPAGESGEKSTKPAAPVRITLAHAT------EAVDR----AAIRYDRSGDQHYDVVS 326

Query: 287 AGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           A +   R +  D    Y+ +       PR   R +M +A + +G+  P 
Sbjct: 327 AFIKSMRGSDADAAVHYLARMLEGGEDPRFVARRIMILASEDIGLADPQ 375


>gi|213963197|ref|ZP_03391454.1| ATPase, AAA family [Capnocytophaga sputigena Capno]
 gi|213954059|gb|EEB65384.1| ATPase, AAA family [Capnocytophaga sputigena Capno]
          Length = 425

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 60/331 (18%), Positives = 110/331 (33%), Gaps = 53/331 (16%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +     +RP +L ++ GQ           +  +     L  ++F GPPG GKTTLA ++A
Sbjct: 2   ENLAERMRPTSLAQYVGQEHLVGAQGALRQQIER--GLLPSLIFWGPPGTGKTTLANIIA 59

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLE--------DRDVLFIDEIHRLSIIVEEILYP 127
            +    F + S  + +   D+  ++   +           ++FIDEIHR +   ++ L  
Sbjct: 60  HQSNRAFYTLSA-ISSGIKDVREVIDQSKQSGGLFTTQNPIVFIDEIHRFNKTQQDSLLQ 118

Query: 128 AMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           A+E   + L+    E PS   +   LSR  +             L               
Sbjct: 119 AVEKGWITLIGATTENPSFEVIPALLSRCQVYILKAFERKDLEQL--------------- 163

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
             L   + R   L    +  +    +   S G  R        V +         IT + 
Sbjct: 164 --LHNAITRDVILKTKDIQLQETEALLKLSGGDGRKLLNTFELVINATPDGEPVVITNDS 221

Query: 246 ADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
               + +     DK G    D+                   ISA +   R +  +    +
Sbjct: 222 VLHLVQKNTVLYDKTGEQHYDI-------------------ISAFIKSIRGSDPNGAVYW 262

Query: 304 MIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           + +        +   R ++ +A + +G   P
Sbjct: 263 LARMIEGGEDVKFIARRMLILASEDIGNANP 293


>gi|330881213|gb|EGH15362.1| recombination factor protein RarA [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 195

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 49/176 (27%), Positives = 79/176 (44%), Gaps = 13/176 (7%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L SR    +    + LR   L+E+ GQ    ++ K   EA +    AL  ++F GPPG+G
Sbjct: 3   LFSREPIAQ-PLAARLRATNLDEYVGQEHVLAHGKPLREALEQ--GALHSMIFWGPPGVG 59

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLT-------NLEDRDVLFIDEIHRLSI 119
           KTTLA+++A+    +F + S  V+A   ++   +            R +LF+DE+HR + 
Sbjct: 60  KTTLARLLAKVSDAHFETVSA-VLAGVKEIRQAVEVAKQQAGQYGKRTILFVDEVHRFNK 118

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
             ++   P +ED  L  +    E PS       LSR  +    +        L  R
Sbjct: 119 SQQDAFLPYVEDGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEGALRKLVHR 174


>gi|310658800|ref|YP_003936521.1| helicase associated protein [Clostridium sticklandii DSM 519]
 gi|308825578|emb|CBH21616.1| putative helicase associated protein (ATPase, AAA family)
           [Clostridium sticklandii]
          Length = 418

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 62/325 (19%), Positives = 125/325 (38%), Gaps = 44/325 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
               ++RP+ ++E  GQ        V   A +     + +++F GPPG+GKT++A ++A 
Sbjct: 4   PLADIVRPKKIDEIVGQEHLTGTDGVLYRAIE--NNIIPNMIFYGPPGVGKTSVANIIAN 61

Query: 77  ELGVNFRSTSG--PVIAKAGDLAA--LLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
               +    +       +  ++     L  L+ +++++IDEI   +   ++IL   +E  
Sbjct: 62  SCNKSIHMLNATYTKTEEVKEILKDSKLQTLDSKEIIYIDEIQNFNKKQQQILLDYIEKG 121

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
            + L+    E P     K  LSR  ++                 G+ + +   + +  K 
Sbjct: 122 DIVLIASTTENPYHYVYKALLSRCFVLEFKALEHKDIKK-----GVQVLIASLKNDTYK- 175

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
                     + + D A   IA  + G  R A  L+  +    E  +   I+ E+     
Sbjct: 176 ----------IKIDDIALDNIAHYADGDMRKAVNLIELILQLYEDENEINISIELLKKLN 225

Query: 251 --LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
              +L  D  G    D   L+   ++  G            S+   ++  L    +I+ G
Sbjct: 226 ISKQLMYDISGDSHYD--ILSAFQKSIRG------------SDTDASLHYLAR--LIKSG 269

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIPH 333
            ++     R L+ IA + +G+  P+
Sbjct: 270 DLKSIC--RRLLVIASEDIGLAYPN 292


>gi|300784614|ref|YP_003764905.1| ATPase [Amycolatopsis mediterranei U32]
 gi|299794128|gb|ADJ44503.1| putative ATPase [Amycolatopsis mediterranei U32]
          Length = 458

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 83/335 (24%), Positives = 121/335 (36%), Gaps = 71/335 (21%)

Query: 21  LLRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
            +RPR+L E  GQ       + L+  +E A     A   VL  GPPG GKTTLA +V+  
Sbjct: 40  RMRPRSLGEVVGQQHLLREGAPLRRLVEGA-----APASVLLYGPPGTGKTTLANLVSIA 94

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAME 130
            G  F + S  + A   ++  ++     R        VLFIDE+HR S   ++ L  A+E
Sbjct: 95  TGRRFVAMSA-LSAGVKEVRGVIEEARRRRQYNAENTVLFIDEVHRFSKTQQDALLGAVE 153

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           D  + L+    E PS   V   LSR  ++           PL D             ED+
Sbjct: 154 DRTVLLVAATTENPSFSVVSPLLSRSLVLQLR--------PLTD-------------EDI 192

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             +++R          +    E A       R+AG   RR     E A       E    
Sbjct: 193 TALLERALADERGLGGELTLTEDARA--HLVRLAGGDARRALTALEAAADAASATEAKTI 250

Query: 249 AL---------LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            L           +  D+ G    D+                   ISA +   R +  D 
Sbjct: 251 DLPIVESTVDKAAVRYDRDGDQHYDV-------------------ISAFIKSIRGSDVDA 291

Query: 300 IEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
              Y+ +       PR   R L+  A + +G+  P
Sbjct: 292 ALHYLARMIEAGEDPRFLARRLVVHASEDIGMADP 326


>gi|242373927|ref|ZP_04819501.1| crossover junction endodeoxyribonuclease ATPase [Staphylococcus
           epidermidis M23864:W1]
 gi|242348481|gb|EES40083.1| crossover junction endodeoxyribonuclease ATPase [Staphylococcus
           epidermidis M23864:W1]
          Length = 422

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 68/324 (20%), Positives = 124/324 (38%), Gaps = 42/324 (12%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +   S +RP  ++E   Q        +       +   L  ++F GPPG+GKT++A+ ++
Sbjct: 4   EPLASRMRPMNIDEIISQQHLVGPKGIIRRMVDTK--RLSSMIFYGPPGIGKTSIAKAIS 61

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
                 FR  +  V     D+  ++   +   + +L +DEIHRL    ++ L P +E+ +
Sbjct: 62  GSTQFKFRQLNA-VTNTKKDMQMVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGK 120

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + L+      P         SR  +            PL D            ++     
Sbjct: 121 IVLIGATTSNPYHAINPAIRSRAQIFELY--------PLDD------HDVRIALDRAIDD 166

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR-RVRDFAEVAHAKTITREIADAAL 250
             RG K     V ++A    + +S+G  R A   L   V    E  + + IT + A   L
Sbjct: 167 SDRGLKSYHPVVDEDAMEYFSTQSQGDVRSALNALELAVLSADEENNQRHITLDDAKDCL 226

Query: 251 LRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            + A   DK G    D+  ++   ++  G  V              A+  L    +I+ G
Sbjct: 227 QKGAFVSDKDGDMHYDV--MSAFQKSIRGSDV------------NAALHYLAR--LIEAG 270

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIP 332
            +      R L+ I+++ +G+  P
Sbjct: 271 DLPTIV--RRLLVISYEDVGLASP 292


>gi|15924617|ref|NP_372151.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|15927207|ref|NP_374740.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus N315]
 gi|156979945|ref|YP_001442204.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus Mu3]
 gi|255006413|ref|ZP_05145014.2| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|258438200|ref|ZP_05689484.1| recombination factor protein RarA [Staphylococcus aureus A9299]
 gi|258443663|ref|ZP_05692002.1| recombination factor protein RarA [Staphylococcus aureus A8115]
 gi|269203253|ref|YP_003282522.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282893130|ref|ZP_06301364.1| ATPase [Staphylococcus aureus A8117]
 gi|296275913|ref|ZP_06858420.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus MR1]
 gi|13701425|dbj|BAB42719.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           N315]
 gi|14247398|dbj|BAB57789.1| similar to ATPase, AAA family [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|156722080|dbj|BAF78497.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|257848244|gb|EEV72235.1| recombination factor protein RarA [Staphylococcus aureus A9299]
 gi|257851069|gb|EEV75012.1| recombination factor protein RarA [Staphylococcus aureus A8115]
 gi|262075543|gb|ACY11516.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282764448|gb|EFC04574.1| ATPase [Staphylococcus aureus A8117]
          Length = 424

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 65/326 (19%), Positives = 124/326 (38%), Gaps = 43/326 (13%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +   S +RP+ ++E   Q        +       +   L  ++F GPPG+GKT++A+ ++
Sbjct: 4   EPLASRMRPKNIDEIISQQHLVGPKGIIRRMVDTK--KLTSMIFYGPPGIGKTSIAKAIS 61

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
                 FR  +  V     D+  ++   +   + +L +DEIHRL    ++ L P +E+ +
Sbjct: 62  GSTQYKFRQLNA-VTNTKKDMQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGK 120

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + L+      P         SR  +            PL D           E +     
Sbjct: 121 IVLIGATTSNPYHAINPAIRSRAQIFELY--------PLNDEDVRQALTRAIEDD----- 167

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK--TITREIADAA 249
            + G K     + ++A    + +S+G  R A   L      A+        +T + A   
Sbjct: 168 -ENGLKTYQPKIDEDAMTYFSTQSQGDVRSALNALELAVLSADNDKDGYRHVTLQDAKDC 226

Query: 250 LLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           L + A   DK G    D+  ++   ++  G  V              A+  L    +I+ 
Sbjct: 227 LQKGAFVSDKDGDMHYDV--MSAFQKSIRGSDV------------NAALHYLAR--LIEA 270

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
           G +      R L+ I+++ +G+  P+
Sbjct: 271 GDLPTIV--RRLLVISYEDIGLASPN 294


>gi|326574344|gb|EGE24287.1| recombination factor protein RarA [Moraxella catarrhalis CO72]
          Length = 412

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 74/325 (22%), Positives = 117/325 (36%), Gaps = 48/325 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP TL+   GQ    S           R   L  ++  G  G+GKTTLA ++A 
Sbjct: 3   PLAERMRPTTLDAVIGQTHLLSEGAPIFN--IVRQGFLPSLILHGSAGIGKTTLAMLLAD 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTN----LEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
            +G  FR  S  V +   +L  +L +      +  V+F+DEIHR +   ++ L  A+E  
Sbjct: 61  AVGRPFRPLSA-VSSGVKELREVLRSDDGLFHEPPVVFVDEIHRFNKAQQDALLQAVETG 119

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           ++ L+    E PS       LSR  +            PL D          Y +  +  
Sbjct: 120 EITLIGATTENPSFSVNNALLSRCQVYKL--------EPLSD-------DEIYAL--IVR 162

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
            +++ A L    +       +   S+G  R A  LL  V    E       +     A  
Sbjct: 163 AIRQDALLKTKDIQINNLAALIDLSQGDGRRALNLLELVAAAPEPIIIDNASVAAV-AGQ 221

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
             +  DK G    DL                   ISA +   R +  D    +M +    
Sbjct: 222 PLVRYDKSGDGHYDL-------------------ISAMIKSVRGSDADAAIYWMARILAA 262

Query: 311 QRTPR--GRLLMPIAWQHLGIDIPH 333
              P    R L+ +A + +G+  P+
Sbjct: 263 GEDPAFVARRLVILASEDIGLANPN 287


>gi|297571411|ref|YP_003697185.1| ATPase AAA [Arcanobacterium haemolyticum DSM 20595]
 gi|296931758|gb|ADH92566.1| AAA ATPase central domain protein [Arcanobacterium haemolyticum DSM
           20595]
          Length = 442

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 76/326 (23%), Positives = 123/326 (37%), Gaps = 54/326 (16%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAK-ARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
            +RP +L +  GQ       +   +  + + A     V+  GPPG+GKTTLA ++A   G
Sbjct: 22  RMRPTSLSDVVGQTHLLGPGQPLRQLIEPSHAGVPSSVILWGPPGIGKTTLAYLIAGTSG 81

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMEDF 132
            NF   S  V +    L   +   +D         VLF+DE+HR S   ++ L PA+E+ 
Sbjct: 82  RNFAEISA-VSSGVAQLRESIARAKDELAITGKETVLFVDEVHRFSKAQQDALLPAVENG 140

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
            + L+    E PS   +   LSR  L++           L DR                 
Sbjct: 141 WVILVAATTENPSFSVISPLLSRSLLLSLQPLTRSDIATLIDR---------------AL 185

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
             +RG     + +  +A  +I M +    R A  +L      +  A  + I+ E  + A+
Sbjct: 186 SDERGFGG-NVTLESDARDQIIMLAGSDARRALTILE----ASASAGNRHISIEDVERAV 240

Query: 251 LRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
                  D+ G    D+                   +SA +   R +  D    Y+ +  
Sbjct: 241 DVHTVRYDRNGDQHYDV-------------------VSAFIKSIRGSDVDAAMHYLARMV 281

Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIP 332
                PR   R LM  A + +G+  P
Sbjct: 282 EAGEDPRFIARRLMISAAEDVGMADP 307


>gi|323353571|ref|ZP_08088104.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
           VMC66]
 gi|322121517|gb|EFX93280.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
           VMC66]
          Length = 422

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 67/326 (20%), Positives = 121/326 (37%), Gaps = 42/326 (12%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            +     +RP  +++  GQ       K+     +A    L  ++  GPPG+GKT++A  +
Sbjct: 2   PENLALRMRPTDIDQIIGQQHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           A      FR+ +  V +K      A         VL +DEIHRL    ++ L P +E   
Sbjct: 60  AGTTKYAFRTFNATVDSKKRLQEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGL 119

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + ++    E P         SR  +               D   + I+L   + E     
Sbjct: 120 VIMIGATTENPFFSVTPAIRSRVQIFELEPLSN-------DDIRMAIQLALKDKE----- 167

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA--EVAHAKTITREIADAA 249
             RG     + + DEA   I + + G  R A   L         +    + IT ++ + +
Sbjct: 168 --RGFD-FPVELDDEALDFIGISTNGDLRSAYNSLDLAVLSTPEDDKGIRHITLDVMENS 224

Query: 250 LLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           L +    +DK G    D+  L+ + ++  G  V              ++       +++ 
Sbjct: 225 LQKSYITMDKDGDGHYDV--LSALQKSIRGSDV------------NASLHYAAR--LVEA 268

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
           G +      R L  IA++ +G+  P 
Sbjct: 269 GDLP--SLARRLTVIAYEDIGLANPD 292


>gi|312213191|emb|CBX93273.1| similar to AAA ATPase central domain protein [Leptosphaeria
           maculans]
          Length = 541

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 63/330 (19%), Positives = 105/330 (31%), Gaps = 62/330 (18%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP  L++  GQ    +   V           L  ++  G PG GKTT+A+++A 
Sbjct: 124 PLAERMRPSALDQVYGQE-LVAPGGVLR--GMVDEGKLPSMVLWGRPGTGKTTIARLIAN 180

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAM 129
             G  +   +     K   +  +             + ++F DE+HR S   ++     +
Sbjct: 181 TSGARYVEINS-TSTKLEQVRKIFAEAASDLQLTGRKTIVFCDELHRFSKTQQDAFLGPV 239

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E   + L+    E PS + +   LSR                                +D
Sbjct: 240 ESGTITLIAATTENPSFKVISALLSRCRTFTLDDLK---------------------EDD 278

Query: 188 LKTIVQRGAKLTGLAV---TDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           L  I++R                    A  S G  R A  LL    + A       +T+E
Sbjct: 279 LVRILERALASENCTSPLLDRSMLTYFAQFSDGDARTALNLLDLAMNLA---KNPDMTKE 335

Query: 245 IADAALLRL-AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
               +L +    D+ G    D                   TISA     R +  D    Y
Sbjct: 336 KIQQSLTKTLVYDRAGDQHYD-------------------TISALHKSIRGSNPDAALYY 376

Query: 304 MIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
           + +       PR   R L+ +A + +G+  
Sbjct: 377 LARMLESGEDPRYIARRLIVVASEDVGLAD 406


>gi|114570317|ref|YP_756997.1| recombination factor protein RarA [Maricaulis maris MCS10]
 gi|114340779|gb|ABI66059.1| Recombination protein MgsA [Maricaulis maris MCS10]
          Length = 435

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 66/342 (19%), Positives = 107/342 (31%), Gaps = 52/342 (15%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M         +          LRP+TL+E  GQ    +               L  ++  
Sbjct: 1   MTSLFEAAGLDAEAPRPLADRLRPQTLDEVVGQDHLLAGKGPIARM--RSQGRLASLILW 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEI 114
           GPPG+GKTT+A+++A +  + F   S  V +   DL         R       +LF+DEI
Sbjct: 59  GPPGVGKTTIARLLAEDSDLEFEPLSA-VFSGVADLKKAFERARARRQQGRGTLLFVDEI 117

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++   P +E+  + L+    E PS       LSR  ++          + L  
Sbjct: 118 HRFNRAQQDGFLPVVEEGTVTLVGATTENPSFELNAALLSRCQVLVLKRLDDDGLDLLMQ 177

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R           ++    I  R                    + G  R    L+  V  F
Sbjct: 178 R-AEAEMGRPLPLDAAARIALRS------------------MADGDGRYMLNLVEEVFTF 218

Query: 233 AEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEP 292
            +                   A DK   +  +L                   ISA     
Sbjct: 219 DQDFKVSADDLATLLN-KRATAYDKDRDEHYNL-------------------ISALHKSI 258

Query: 293 RDAIEDLIEPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIP 332
           R +  D    +  +       P    R L+ +A + +G+  P
Sbjct: 259 RGSDPDAALYWFARMLEGGEDPLFLARRLVRMASEDIGLADP 300


>gi|227889733|ref|ZP_04007538.1| crossover junction endodeoxyribonuclease [Lactobacillus johnsonii
           ATCC 33200]
 gi|227849597|gb|EEJ59683.1| crossover junction endodeoxyribonuclease [Lactobacillus johnsonii
           ATCC 33200]
          Length = 431

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 59/322 (18%), Positives = 107/322 (33%), Gaps = 35/322 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+ L+E  GQ     N K+     +A+   L  ++  GPPG+GKT++A  +A 
Sbjct: 3   PLAYRMRPKNLDEVVGQEHLVGNKKIIRRMVEAK--LLSSMILYGPPGIGKTSIASAIAG 60

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR  +     K    + A    +    +L +DEIHRL    ++ L P +E   + 
Sbjct: 61  STKYAFRKLNAATDTKKDLQIIAEEGKMSGTVILLLDEIHRLDKPKQDFLLPLLESGNII 120

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           L+    E P         SR  +                   +      + I+      +
Sbjct: 121 LIGATTENPYISISPAIRSRCQIFELH--------------RLKKWDISHAIDRALKDSE 166

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
            G     + +T +A   +  +  G  R     L       +    +    ++        
Sbjct: 167 TGLGKYNVELTKDARNLLIEKGNGDLRATLNALELAVLSTKEEKQENADNKLVIDKAEIQ 226

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY---MIQQGFI 310
              +      D            G     + +SA     R +  D    Y   + + G +
Sbjct: 227 DSIQFKSQNYDA--------TSDGH---YDLLSAFQKSIRGSDTDAALYYLGNLCESGDL 275

Query: 311 QRTPRGRLLMPIAWQHLGIDIP 332
                 R L+ IA++ +G+  P
Sbjct: 276 VAIC--RRLLVIAYEDIGLANP 295


>gi|116333872|ref|YP_795399.1| recombination factor protein RarA [Lactobacillus brevis ATCC 367]
 gi|116099219|gb|ABJ64368.1| Recombination protein MgsA [Lactobacillus brevis ATCC 367]
          Length = 425

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 71/319 (22%), Positives = 123/319 (38%), Gaps = 37/319 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+ LE+  GQ +  +  K+      A+   L  ++  GPPG GKT++A  +A 
Sbjct: 5   PLAYRMRPQRLEDIVGQQDLVAPGKIIARMVAAK--LLSSMILYGPPGTGKTSIASAIAG 62

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR  +    +K    + A    +    +L +DEIHRL    ++ L P +E  ++ 
Sbjct: 63  STQYAFRKLNAATDSKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPHLESGRI- 121

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           +++G       + IN +    I + T++  +     D   I +     + E+       G
Sbjct: 122 VLIGATTENPYININPA----IRSRTQIFEVHPLTPDDIKIALHRALTDTEN-------G 170

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT--ITREIADAALLRL 253
                + +  EA   IA  + G  R A   L         A+     IT  +A+A   R 
Sbjct: 171 LGKLPIDLNTEALNFIAGATNGDLRSALNGLELAAQSTPAANDDRIHITLAVAEACFQRK 230

Query: 254 AI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
           A+  DK G    D      +   F     G +T +A                ++  G + 
Sbjct: 231 ALMGDKDGDAHYD------VISAFQKSIRGSDTDAALH----------YLAQLVAAGDLP 274

Query: 312 RTPRGRLLMPIAWQHLGID 330
                R LM IA++ +G+ 
Sbjct: 275 AIC--RRLMVIAYEDIGMA 291


>gi|256619453|ref|ZP_05476299.1| recombination factor protein RarA [Enterococcus faecalis ATCC 4200]
 gi|256598980|gb|EEU18156.1| recombination factor protein RarA [Enterococcus faecalis ATCC 4200]
          Length = 425

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 67/327 (20%), Positives = 115/327 (35%), Gaps = 49/327 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RPR L+E  GQ       K+     +A+   L  ++  GPPG GKT++A  +A 
Sbjct: 4   PLAYRMRPRHLDEVVGQQHLVGPGKIIRRMVEAK--MLSSMILYGPPGTGKTSIASAIAG 61

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR  +     K    + A    +    +L +DEIHRL    ++ L P +E+ ++ 
Sbjct: 62  STNYAFRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPHLENGRI- 120

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ-- 193
           +M+G       + IN                   ++ R  I       E +  + I +  
Sbjct: 121 IMIGATTENPYITIN-----------------PAIRSRTQIFEVKPLTETDIQQAIQEAL 163

Query: 194 ----RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT--ITREIAD 247
               RG     + + ++A   +   + G  R A   L                IT  I +
Sbjct: 164 TDSTRGLGDYPVHLEEKALQHLTRATNGDLRSALNGLELAVKSTPKNEQGEIKITLPIIE 223

Query: 248 AALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
             + R A   DK G    D      +   F     G +  +                 ++
Sbjct: 224 ECVQRKALTHDKDGDAHYD------VISAFQKSIRGSDVDAGLH----------YLGRLV 267

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           + G +      R LM IA++ +G+  P
Sbjct: 268 EAGDLPIIC--RRLMVIAYEDIGLGNP 292


>gi|294848657|ref|ZP_06789403.1| ATPase [Staphylococcus aureus A9754]
 gi|294824683|gb|EFG41106.1| ATPase [Staphylococcus aureus A9754]
          Length = 427

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 65/326 (19%), Positives = 124/326 (38%), Gaps = 43/326 (13%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +   S +RP+ ++E   Q        +       +   L  ++F GPPG+GKT++A+ ++
Sbjct: 7   EPLASRMRPKNIDEIISQQHLVGPRGIIRRMVDTK--KLTSMIFYGPPGIGKTSIAKAIS 64

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
                 FR  +  V     D+  ++   +   + +L +DEIHRL    ++ L P +E+ +
Sbjct: 65  GSTQYKFRQLNA-VTNTKKDMQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGK 123

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + L+      P         SR  +            PL D           E +     
Sbjct: 124 IVLIGATTSNPYHAINPAIRSRAQIFELY--------PLNDEDVRQALTRAIEDD----- 170

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK--TITREIADAA 249
            + G K     + ++A    + +S+G  R A   L      A+        +T + A   
Sbjct: 171 -ENGLKTYQPKIDEDAMTYFSTQSQGDVRSALNALELAVLSADNDKDGYRHVTLQDAKDC 229

Query: 250 LLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           L + A   DK G    D+  ++   ++  G  V              A+  L    +I+ 
Sbjct: 230 LQKGAFVSDKDGDMHYDV--MSAFQKSIRGSDV------------NAALHYLAR--LIEA 273

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
           G +      R L+ I+++ +G+  P+
Sbjct: 274 GDLPTIV--RRLLVISYEDIGLASPN 297


>gi|28210750|ref|NP_781694.1| recombination factor protein RarA [Clostridium tetani E88]
 gi|28203188|gb|AAO35631.1| ATPase associated with chromosome architecture/replication
           [Clostridium tetani E88]
          Length = 427

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 72/337 (21%), Positives = 120/337 (35%), Gaps = 61/337 (18%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E      +RP+ L+E  GQ       K+        +E L +++F GPPG GKTT+A ++
Sbjct: 3   EKPLADKIRPKILDEVFGQKHILGQGKILRRII--NSEKLTNMIFYGPPGTGKTTVANII 60

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLE-----DRDVLFIDEIHRLSIIVEEILYPAM 129
           A               A   D+  ++ +L+     +  VL++DEI   +   ++ L   M
Sbjct: 61  ANRTN-KTLYKLNATNASLADIKNIIADLDSFMGVEGVVLYLDEIQNFNKKQQQSLLEFM 119

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E  Q+ L+    E P     K  LSR T+    + +                      ED
Sbjct: 120 EKGQITLIASTTENPYHYIYKAILSRATIFEFKSLLK---------------------ED 158

Query: 188 LKTIVQRGAKLTGLA--------VTDEAACEIAMRSRGTPRIAGRLLRRVRDFA--EVAH 237
           +   + R   +             + +A   IA  S G  R A   L          + +
Sbjct: 159 ILEALNRALDILKKEDFKNTYIYFSKDALEHIAKVSNGDLRRALNGLELCVYSTKPTLEN 218

Query: 238 AKTITREIADAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDA 295
              +  E+A     R     DK G    D   L+   ++  G            S+   +
Sbjct: 219 KIVVDLEVAIECTQRKVLNYDKFGDSHYD--ILSAFQKSIRG------------SDADAS 264

Query: 296 IEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           I  L    +I+ G +      R L+ IA + +G+  P
Sbjct: 265 IHYLAR--LIEAGDLISIC--RRLLVIASEDIGLAYP 297


>gi|271967375|ref|YP_003341571.1| recombination factor protein RarA [Streptosporangium roseum DSM
           43021]
 gi|270510550|gb|ACZ88828.1| recombination factor protein RarA [Streptosporangium roseum DSM
           43021]
          Length = 436

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 72/333 (21%), Positives = 118/333 (35%), Gaps = 61/333 (18%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +     +RPR L+E  GQ              +A  EA   +   GPPG GKTTLA VVA
Sbjct: 17  EPLAVRMRPRGLDEVIGQRHLLGPGTPLRRLVEA--EAPMSLFLWGPPGTGKTTLAYVVA 74

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPA 128
                 F   S  V A   ++ A +            + VLF+DE+HR +   ++ L PA
Sbjct: 75  GVTKRRFVEVSA-VSAGVKEVRAAIEQARRELGMSGRQTVLFVDEVHRFNKAQQDALLPA 133

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           +E+  +  +    E P    +                            + + L     +
Sbjct: 134 VENRWVTFIGATTENPFFSVISP---------------------LLSRSLLLTLESLSED 172

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA---HAKTITR 243
           D++ +++R   +      D  A      +    R+AG   RR   + E A       IT 
Sbjct: 173 DIRMVLERA--VADPRGLDGKAKLAPEAAEHLVRLAGGDARRSLTYLEAASLIADGEITV 230

Query: 244 EIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           E+ + A+ + A   D+ G    D+                   IS  +   R +  D   
Sbjct: 231 EVVERAVDKAAVRYDRQGDQHYDV-------------------ISGFIKSMRGSDADAAL 271

Query: 302 PYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
            Y+ +       PR   R ++  A + +G+  P
Sbjct: 272 HYLARMVEAGEDPRFIARRIVIFASEDVGMADP 304


>gi|310778223|ref|YP_003966556.1| Recombination protein MgsA [Ilyobacter polytropus DSM 2926]
 gi|309747546|gb|ADO82208.1| Recombination protein MgsA [Ilyobacter polytropus DSM 2926]
          Length = 412

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 72/340 (21%), Positives = 123/340 (36%), Gaps = 58/340 (17%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            L   N          +RP+TL ++ GQ E      V  +        + + +F GPPG 
Sbjct: 3   SLFHGNYDNIRPLAYQMRPKTLLDYVGQEEIIGEKSVLRKLITK--GKMINSIFFGPPGT 60

Query: 66  GKTTLAQVVARELGVNFRSTSGPV-----IAKAGDLAALLTNLE-DRDVLFIDEIHRLSI 119
           GKT+LA+++A EL  +F   +          +  + A     LE  R +LF+DEIHR + 
Sbjct: 61  GKTSLAEIIAEELSYSFEKMNATTANLSDFREVVERAKKRVELENRRTLLFLDEIHRFNK 120

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           + ++ L P  E+  + L+    E P        LSR                      + 
Sbjct: 121 LQQDSLLPYTEEGLIVLVGATTENPYYTLNNALLSRC---------------------MV 159

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIA--MRSRGTPRIAGRLLRRVRDFAEV 235
                 E   ++ +V++G K   +     +  E      SRG  R+A   +    + AE 
Sbjct: 160 FEFKKLEERHIRELVKKGCKRLDILEKLSSEMEDIILELSRGDARVALNYVELFANTAED 219

Query: 236 AHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDA 295
            +      E+ +    R        D+ ++                   +SA +   R +
Sbjct: 220 LNEN----ELKELFKKRNDAYHKKEDKYNI-------------------VSAFIKSIRGS 256

Query: 296 IEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
             D    +M +       PR   R LM +A + +G+  P 
Sbjct: 257 DPDAAVYWMARMLSGGEDPRYIARRLMILASEDIGMANPE 296


>gi|303246593|ref|ZP_07332871.1| AAA ATPase central domain protein [Desulfovibrio fructosovorans JJ]
 gi|302491933|gb|EFL51811.1| AAA ATPase central domain protein [Desulfovibrio fructosovorans JJ]
          Length = 408

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 78/324 (24%), Positives = 123/324 (37%), Gaps = 55/324 (16%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           +++      +RP  L+ F GQ    S L   + A +     L  +LF GPPG GK+TLA 
Sbjct: 6   NEKRPLAERVRPGALDGFVGQTHVISRLTTMLAAPR-----LPSLLFFGPPGCGKSTLAL 60

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           ++AR     +   S P       LAAL   ++ +++L +DE+HR S   ++   P +E  
Sbjct: 61  ILARAKERPYVRVSAPEAG----LAALRELIKGKEILILDELHRFSKAQQDFFLPLLETG 116

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           ++ L+    E PS    +  LSR  +                              +L  
Sbjct: 117 EIVLLATTTENPSFSVTRQLLSRLHVFRL---------------------RPLSQAELLV 155

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           + +RGAK  G+ +  E+   +AM S G  R    L+       E   A    ++    AL
Sbjct: 156 LAERGAKEAGMELAPESLEAVAMLSSGDGRTLLNLIEYTAALPEEKRAPEELKKQLPEAL 215

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
            R   D+ G    +L                    SA +   R +  D    Y+      
Sbjct: 216 AR--GDRDGDSHYELA-------------------SAMIKSIRGSDPDAALYYLACLLES 254

Query: 311 QRTPR--GRLLMPIAWQHLGIDIP 332
              PR   R LM  A + +G+  P
Sbjct: 255 GEDPRFCCRRLMISASEDIGLADP 278


>gi|241668070|ref|ZP_04755648.1| recombination factor protein RarA [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876605|ref|ZP_05249315.1| recombination factor protein rarA [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254842626|gb|EET21040.1| recombination factor protein rarA [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 412

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 65/323 (20%), Positives = 110/323 (34%), Gaps = 41/323 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + LRP+++EE  GQ    S      +      + +  ++  G PG+GKTTLA+++A 
Sbjct: 5   PLAARLRPQSIEEVIGQEHILSKSGSLTK--ILAGDGICSLILCGKPGVGKTTLAKIIAS 62

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
              + F   S  V +   D+  ++ + +     VLF+DEIHR +   +++L P +E  ++
Sbjct: 63  SKRLEFFELSA-VDSGVKDVKKIIADNQHLGSFVLFLDEIHRFNKSQQDLLLPYVESGKI 121

Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            L+    E P+       +SR  ++         T  L  R      L            
Sbjct: 122 ILIGATTENPTYYLNNALVSRVFILRLKRLNISETRKLIQRAITKDEL------------ 169

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
                     + D+    I   S G  R    LL R+   +                  R
Sbjct: 170 ---LAKHSFEIDDDLYNAIHNYSEGDCRKILNLLERMFLIS-----------------DR 209

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
                +  D  D             G    E +SA     R    D    ++        
Sbjct: 210 TNTIHLDKDLFDRAVGEASRDFHREGKEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGA 269

Query: 313 TPR--GRLLMPIAWQHLGIDIPH 333
            P    R ++ IA + +G   P 
Sbjct: 270 DPLVIARRMLCIASEDIGNADPQ 292


>gi|15609696|ref|NP_217075.1| recombination factor protein RarA [Mycobacterium tuberculosis
           H37Rv]
 gi|15842097|ref|NP_337134.1| recombination factor protein RarA [Mycobacterium tuberculosis
           CDC1551]
 gi|148662398|ref|YP_001283921.1| recombination factor protein RarA [Mycobacterium tuberculosis
           H37Ra]
 gi|148823755|ref|YP_001288509.1| recombination factor protein RarA [Mycobacterium tuberculosis F11]
 gi|167968830|ref|ZP_02551107.1| recombination factor protein RarA [Mycobacterium tuberculosis
           H37Ra]
 gi|215404508|ref|ZP_03416689.1| recombination factor protein RarA [Mycobacterium tuberculosis
           02_1987]
 gi|215412332|ref|ZP_03421092.1| recombination factor protein RarA [Mycobacterium tuberculosis
           94_M4241A]
 gi|215446810|ref|ZP_03433562.1| recombination factor protein RarA [Mycobacterium tuberculosis T85]
 gi|218754298|ref|ZP_03533094.1| recombination factor protein RarA [Mycobacterium tuberculosis GM
           1503]
 gi|253798360|ref|YP_003031361.1| hypothetical protein TBMG_01413 [Mycobacterium tuberculosis KZN
           1435]
 gi|254232680|ref|ZP_04926007.1| conserved hypothetical alanine leucine valine rich protein
           [Mycobacterium tuberculosis C]
 gi|254551610|ref|ZP_05142057.1| recombination factor protein RarA [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|289553651|ref|ZP_06442861.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis KZN 605]
 gi|289746351|ref|ZP_06505729.1| recombination factor protein RarA [Mycobacterium tuberculosis
           02_1987]
 gi|289758688|ref|ZP_06518066.1| recombination factor protein RarA [Mycobacterium tuberculosis T85]
 gi|289762729|ref|ZP_06522107.1| conserved hypothetical alanine leucine valine rich protein
           [Mycobacterium tuberculosis GM 1503]
 gi|294994330|ref|ZP_06800021.1| recombination factor protein RarA [Mycobacterium tuberculosis 210]
 gi|297635170|ref|ZP_06952950.1| recombination factor protein RarA [Mycobacterium tuberculosis KZN
           4207]
 gi|297732162|ref|ZP_06961280.1| recombination factor protein RarA [Mycobacterium tuberculosis KZN
           R506]
 gi|298526033|ref|ZP_07013442.1| conserved hypothetical alanine leucine valine rich protein
           [Mycobacterium tuberculosis 94_M4241A]
 gi|306776833|ref|ZP_07415170.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis SUMu001]
 gi|306780598|ref|ZP_07418935.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis SUMu002]
 gi|306785361|ref|ZP_07423683.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis SUMu003]
 gi|306789961|ref|ZP_07428283.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis SUMu004]
 gi|306794041|ref|ZP_07432343.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis SUMu005]
 gi|306798440|ref|ZP_07436742.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis SUMu006]
 gi|306804319|ref|ZP_07440987.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis SUMu008]
 gi|306807642|ref|ZP_07444310.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis SUMu007]
 gi|306969843|ref|ZP_07482504.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis SUMu009]
 gi|306972948|ref|ZP_07485609.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis SUMu010]
 gi|307080659|ref|ZP_07489829.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis SUMu011]
 gi|307085246|ref|ZP_07494359.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis SUMu012]
 gi|313659496|ref|ZP_07816376.1| recombination factor protein RarA [Mycobacterium tuberculosis KZN
           V2475]
 gi|2496491|sp|Q50739|Y2559_MYCTU RecName: Full=Uncharacterized AAA domain-containing protein
           Rv2559c/MT2636
 gi|1460081|emb|CAB01045.1| CONSERVED HYPOTHETICAL ALANINE LEUCINE VALINE RICH PROTEIN
           [Mycobacterium tuberculosis H37Rv]
 gi|13882379|gb|AAK46948.1| ATPase, AAA family [Mycobacterium tuberculosis CDC1551]
 gi|124601739|gb|EAY60749.1| conserved hypothetical alanine leucine valine rich protein
           [Mycobacterium tuberculosis C]
 gi|148506550|gb|ABQ74359.1| conserved hypothetical alanine,leucine and valine rich protein
           [Mycobacterium tuberculosis H37Ra]
 gi|148722282|gb|ABR06907.1| conserved alanine, leucine and valine rich protein [Mycobacterium
           tuberculosis F11]
 gi|253319863|gb|ACT24466.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis KZN 1435]
 gi|289438283|gb|EFD20776.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis KZN 605]
 gi|289686879|gb|EFD54367.1| recombination factor protein RarA [Mycobacterium tuberculosis
           02_1987]
 gi|289710235|gb|EFD74251.1| conserved hypothetical alanine leucine valine rich protein
           [Mycobacterium tuberculosis GM 1503]
 gi|289714252|gb|EFD78264.1| recombination factor protein RarA [Mycobacterium tuberculosis T85]
 gi|298495827|gb|EFI31121.1| conserved hypothetical alanine leucine valine rich protein
           [Mycobacterium tuberculosis 94_M4241A]
 gi|308214760|gb|EFO74159.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis SUMu001]
 gi|308326532|gb|EFP15383.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis SUMu002]
 gi|308329953|gb|EFP18804.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis SUMu003]
 gi|308333570|gb|EFP22421.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis SUMu004]
 gi|308337597|gb|EFP26448.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis SUMu005]
 gi|308341263|gb|EFP30114.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis SUMu006]
 gi|308345964|gb|EFP34815.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis SUMu007]
 gi|308349070|gb|EFP37921.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis SUMu008]
 gi|308352653|gb|EFP41504.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis SUMu009]
 gi|308357638|gb|EFP46489.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis SUMu010]
 gi|308361580|gb|EFP50431.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis SUMu011]
 gi|308365200|gb|EFP54051.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis SUMu012]
 gi|323718832|gb|EGB27988.1| hypothetical protein TMMG_02570 [Mycobacterium tuberculosis
           CDC1551A]
 gi|326904174|gb|EGE51107.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis W-148]
 gi|328458130|gb|AEB03553.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis KZN 4207]
          Length = 452

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 75/322 (23%), Positives = 122/322 (37%), Gaps = 47/322 (14%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            +RP +L+E  GQ    +         +    A   V+  GPPG GKTTLA ++++  G 
Sbjct: 34  RMRPASLDEVVGQDHLLAPGSPLRRLVEGSGVA--SVILYGPPGSGKTTLAALISQATGR 91

Query: 81  NFRSTSGPVIAKAGDLAALLTN------LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
            F + S  + A   ++ A++ N        ++ VLFIDE+HR S   ++ L  A+E   +
Sbjct: 92  RFEALSA-LSAGVKEVRAVIENSRKALLHGEQTVLFIDEVHRFSKTQQDALLSAVEHRVV 150

Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            L+    E PS   V   LSR                      + ++L     ED + +V
Sbjct: 151 LLVAATTENPSFSVVAPLLSR---------------------SLILQLRPLTAEDTRAVV 189

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           QR   +        A            ++A    RR    A  A         A   L+ 
Sbjct: 190 QRA--IDDPRGLGRAVAVAPEAVDLLVQLAAGDARR----ALTALEVAAEAAQAAGELVS 243

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           +   +   D+  +RY          G    + +SA +   R +  D    Y+ +      
Sbjct: 244 VQTIERSVDKAAVRY-------DRDGDQHYDVVSAFIKSVRGSDVDAALHYLARMLVAGE 296

Query: 313 TPR--GRLLMPIAWQHLGIDIP 332
            PR   R LM +A + +G+  P
Sbjct: 297 DPRFIARRLMILASEDIGMAGP 318


>gi|328794088|ref|XP_001122859.2| PREDICTED: uncharacterized AAA domain-containing protein YrvN-like,
           partial [Apis mellifera]
          Length = 328

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 67/325 (20%), Positives = 112/325 (34%), Gaps = 38/325 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+ L E  GQ       K+     +A+   L  ++  GPPG+GKT++A  +A 
Sbjct: 3   PLAYRMRPQNLNEVVGQQHLIGPGKIIRRMVEAK--MLSSMILYGPPGIGKTSIASAIAG 60

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR  +    +K   +  A    L    +L +DEIHRL    ++ L P +E  Q+ 
Sbjct: 61  STKYAFRQLNAATDSKKQLEQVAAEGKLSGTVILLLDEIHRLDKTKQDFLLPLLESGQII 120

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ------DRFGIPIRLNFYEIED 187
           L+    E P         SR  +           N         D+ G+         + 
Sbjct: 121 LIGATTENPYIAISPAIRSRCQIFELKPLAKEDVNKAIGRALKDDKNGLGNYHVKLTNDA 180

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            + +VQ+G       +      E+A+RS     IA    +   D   +   +        
Sbjct: 181 RELLVQKGNGDLRATL---NGLELAVRSTKQEMIAAG--KNDEDEITINQDEMANSIQ-- 233

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
             L     D  G    D      +   F     G +T +A                +I+ 
Sbjct: 234 --LRSQNFDAKGDGHYD------LVSAFQKSIRGSDTDAALH----------YLARLIES 275

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIP 332
           G +      R L  I+++ +G+  P
Sbjct: 276 GDLVAIC--RRLSVISYEDIGLANP 298


>gi|163790370|ref|ZP_02184802.1| ATPase, AAA family protein [Carnobacterium sp. AT7]
 gi|159874441|gb|EDP68513.1| ATPase, AAA family protein [Carnobacterium sp. AT7]
          Length = 428

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 68/322 (21%), Positives = 128/322 (39%), Gaps = 39/322 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP  ++   GQ       K+     +A+   L  ++  GPPG+GKT++A  +A 
Sbjct: 4   PLAYRMRPTHIDNIVGQQHLVGKGKIIRRMVEAK--MLSSMILYGPPGIGKTSIASAIAG 61

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
                FR  +     K  DL  ++   +     +L +DE+HRL    ++ L P +E+ ++
Sbjct: 62  TTKFAFRVLNAASDTK-KDLQIVVEEAKMSGTVILLLDEVHRLDKPKQDFLLPHLENGRI 120

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
            +++G       + IN +    I + T++  L     +     +     + E       +
Sbjct: 121 -ILIGATTENPYITINPA----IRSRTQIFELKPLSNEDIQHALWNAVNDSE-------K 168

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV--RDFAEVAHAKTITREIADAALLR 252
           G     + +TDEA    +  + G  R +   L         +     TIT +IA+  + R
Sbjct: 169 GFGNEQVTITDEALLHFSRATNGDLRSSLNGLELAIKSTAPDEKGIITITLDIAEECIQR 228

Query: 253 LA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
            A   DK G    D+  ++ + ++  G  V     +A                +I+ G +
Sbjct: 229 KALTHDKDGDAHYDV--ISALQKSIRGSDVD----AAMH----------YLARLIEAGDL 272

Query: 311 QRTPRGRLLMPIAWQHLGIDIP 332
                 R LM IA++ +G+  P
Sbjct: 273 PIIS--RRLMVIAYEDIGLANP 292


>gi|332184520|gb|AEE26774.1| ATPase, AAA family [Francisella cf. novicida 3523]
          Length = 412

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 65/323 (20%), Positives = 120/323 (37%), Gaps = 41/323 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP++++E  GQ    S   +  +      + +  ++  G PG+GKT+LA+++A 
Sbjct: 5   PLAARIRPQSIDEIVGQEHLLSQDGILTK--ILAVDGICSLVLCGKPGVGKTSLARIIAN 62

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQL 134
              + F   S  V +   D+  ++ + +  D  VLF+DEIHR +   +++L P +E  ++
Sbjct: 63  SKKLEFFELSA-VDSGVKDVKKIIADNQHLDSFVLFLDEIHRFNKSQQDLLLPYVESGKI 121

Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            L+    E P+       +SR  ++       + T  L       I+    + E L    
Sbjct: 122 ILIGATTENPTYYLNDALVSRLFILRLKRLSLVATQKL-------IQKALSQDEVLAKH- 173

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
                     + D     I   S G  R    LL R+   +       + +E+ D A+  
Sbjct: 174 -------KFKIDDGLYNAIHNYSEGDCRKILNLLERMFLISTRGDEIYLNKELFDQAVGE 226

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
            + D                     G    E +SA     R    D    ++        
Sbjct: 227 TSRD-----------------FHREGREFYEQLSAFHKSVRGTDPDAAIFWLSLMLDNGV 269

Query: 313 TPR--GRLLMPIAWQHLGIDIPH 333
            P    R ++ IA + +G   P 
Sbjct: 270 DPLVIARRMLCIASEDIGNADPQ 292


>gi|326803422|ref|YP_004321240.1| ATPase, AAA family [Aerococcus urinae ACS-120-V-Col10a]
 gi|326651019|gb|AEA01202.1| ATPase, AAA family [Aerococcus urinae ACS-120-V-Col10a]
          Length = 424

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 70/323 (21%), Positives = 118/323 (36%), Gaps = 39/323 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+TLEE  GQ     + K+     KA+   L  ++  GPPG+GKT++A  +A 
Sbjct: 6   PLAYRMRPKTLEEVVGQGHLVGSGKIIWRMVKAKQ--LRSMILYGPPGIGKTSIASAIAG 63

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
              ++FR  +     K   L  ++   +     +L +DEIHRL    ++ L P +E   L
Sbjct: 64  STKLSFRQLNAATDNKKA-LQEVVAEAKFSGSLILMLDEIHRLDKTKQDFLLPHLESGLL 122

Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            L+    E P         SR  +                   I        I+      
Sbjct: 123 ILIGATTENPYININPAIRSRAQIFELHP--------------IEADQIKVAIDHALENK 168

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE--IADAAL 250
           +RG     + +++EA   +A  S G  R A   L       E      I  +  +A+  L
Sbjct: 169 ERGLGKYPIQLSNEARDYLANYSNGDLRSALNALELAALSTEENAEGQILIDLSVAEECL 228

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
            + A D      +    ++   ++  G  V              A+       +I+ G +
Sbjct: 229 QKKAFDHDEDGDMHYDVVSAFQKSIRGSDV------------NAALHYAAR--LIEAGDL 274

Query: 311 QRTPRGRLLMPIAWQHLGIDIPH 333
                 R LM  A++ +G+  P 
Sbjct: 275 N--SLCRRLMVCAYEDIGLANPE 295


>gi|23099472|ref|NP_692938.1| recombination factor protein RarA [Oceanobacillus iheyensis HTE831]
 gi|22777701|dbj|BAC13973.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 425

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 69/331 (20%), Positives = 125/331 (37%), Gaps = 56/331 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+ ++E  GQ       K+     KA    L  ++  GPPG GKT++A  +A 
Sbjct: 6   PLAYRMRPKNIDEIIGQEHLVGQGKIIDRMVKA--NMLSSMILFGPPGTGKTSMAYALAN 63

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAMEDFQL 134
            +G+  +  +  V  K  D+  ++   + R   VL +DE+HRL    ++ L P +E   L
Sbjct: 64  SVGLPLKILNA-VTDKKKDMEIVVEEAKMRGQMVLILDEVHRLDKAKQDFLLPHLESNLL 122

Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            L+      P         SR  L                        +   I+++KT +
Sbjct: 123 TLIGCTTSNPYHSINPAIRSRCHLFEL---------------------HGLTIDNVKTAL 161

Query: 193 QRGA------KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI--TRE 244
            R            + + ++A   +A+ + G  R +   L              I  T +
Sbjct: 162 HRAIVQYNETSQNDINIGEDALEHLALAANGDLRSSLNGLELAVSSTPPTETGVIELTID 221

Query: 245 IADAALLR--LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           IA+  + +   + DK G    D+  L+   ++  G  V      A L             
Sbjct: 222 IAEECMQKKSFSHDKDGDAHYDV--LSAFQKSIRGSDVD-----AAL---------HYLS 265

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            +I+ G +    R R+++ IA++ +G+  P 
Sbjct: 266 RLIEAGDLDSIAR-RMIV-IAYEDIGLANPQ 294


>gi|21673587|ref|NP_661652.1| recombination factor protein RarA [Chlorobium tepidum TLS]
 gi|21646700|gb|AAM71994.1| ATPase, AAA family [Chlorobium tepidum TLS]
          Length = 451

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 75/338 (22%), Positives = 119/338 (35%), Gaps = 53/338 (15%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           S   ++       +RPR+++E  GQ             +      +  ++F GPPG GKT
Sbjct: 20  SAKSNRFQPLAERVRPRSIDELFGQEHLVGPGGPVR--SYLEQGRIPSMIFWGPPGSGKT 77

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIV 121
           TLA++ AR L   F   S    A   D+  +L   +        + +LFIDEIHR +   
Sbjct: 78  TLAEICARSLNYRFEQLSA-TDAGVKDVRRVLELAQKSRSIDGRQMLLFIDEIHRFNKAQ 136

Query: 122 EEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           ++ L  A+E   + L+    E PS    +  LSR  +         + NPL +     + 
Sbjct: 137 QDTLLHAIEQGLIVLIGATTENPSFEVNRALLSRMQV--------YILNPLSEAEVRRVV 188

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
               E +         A +    +       +   + G  R A   L      A    A 
Sbjct: 189 ERAIESDPQLA----AAGVEMRDM-----EFLLAYAAGDARKALNALEAALSLAPRGTAP 239

Query: 240 -TITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAI 296
             I R   + AL   A   DK G    D                   T+SA +   R + 
Sbjct: 240 VVIDRTRLEQALQHRAPTYDKGGEAHYD-------------------TVSAFIKSMRGSD 280

Query: 297 EDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
            D    +M +       P+   R ++  A + +G   P
Sbjct: 281 PDAALFWMAKMIDGGEDPKFIARRMVIFASEDIGNADP 318


>gi|158523435|gb|ABW70832.1| AAA-family ATPase [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
          Length = 408

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 65/323 (20%), Positives = 110/323 (34%), Gaps = 41/323 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + LRP+++EE  GQ    S      +      + +  ++  G PG+GKTTLA+++A 
Sbjct: 1   PLAARLRPQSIEEVIGQEHILSKSGSLTK--ILAGDGICSLILCGKPGVGKTTLAKIIAS 58

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
              + F   S  V +   D+  ++ + +     VLF+DEIHR +   +++L P +E  ++
Sbjct: 59  SKRLEFFELSA-VDSGVKDVKKIIADNQHLGSFVLFLDEIHRFNKSQQDLLLPYVESGKI 117

Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            L+    E P+       +SR  ++         T  L  R      L            
Sbjct: 118 ILIGATTENPTYYLNNALVSRVFILRLKRLNISETRKLIQRAITKDEL------------ 165

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
                     + D+    I   S G  R    LL R+   +                  R
Sbjct: 166 ---LAKHSFEIDDDLYNAIHNYSEGDCRKILNLLERMFLIS-----------------DR 205

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
                +  D  D             G    E +SA     R    D    ++        
Sbjct: 206 TNTIHLDKDLFDRAVGEASRDFHREGKEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGA 265

Query: 313 TPR--GRLLMPIAWQHLGIDIPH 333
            P    R ++ IA + +G   P 
Sbjct: 266 DPLVIARRMLCIASEDIGNADPQ 288


>gi|330993252|ref|ZP_08317188.1| Replication-associated recombination protein A [Gluconacetobacter
           sp. SXCC-1]
 gi|329759654|gb|EGG76162.1| Replication-associated recombination protein A [Gluconacetobacter
           sp. SXCC-1]
          Length = 463

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 69/330 (20%), Positives = 109/330 (33%), Gaps = 57/330 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP TL++  GQ           +       +L  ++  G PG+GKTT+A+++A 
Sbjct: 45  PLADRLRPATLDDVVGQDHLLGPQGSLRQM--LARGSLASLILWGGPGVGKTTIARLLAD 102

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130
             G+ F   S  V +   DL     +           +LF+DEIHR +   ++   P +E
Sbjct: 103 AAGLRFVQLSA-VFSGVADLKRAFEDARRTSAQGGGTLLFVDEIHRFNRAQQDGFLPVVE 161

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF-YEIED 187
           D  + L+    E PS       LSR  ++            L +R             E 
Sbjct: 162 DGTVVLVGATTENPSFALNSALLSRCQVLVLHRLDDAAMEKLLERAEETTGTALPLTPEA 221

Query: 188 LKTI--VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
             T+  +  G     L + ++       ++   P     LL R                 
Sbjct: 222 RATLRAMADGDGRYLLNMVEQLLALPPQKAPLDPAALSTLLAR----------------- 264

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
             AAL     DK   +  +L                   ISA     R +  D    +  
Sbjct: 265 -RAAL----YDKDREEHYNL-------------------ISALHKSMRGSDPDAALYWFA 300

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +       PR   R L   A + +G+  PH
Sbjct: 301 RMLEGGEDPRYIARRLTRFAAEDVGMADPH 330


>gi|57650509|ref|YP_186522.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus COL]
 gi|151221741|ref|YP_001332563.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|161353524|ref|YP_500242.2| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|162138568|ref|YP_494279.2| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|221141103|ref|ZP_03565596.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|253733121|ref|ZP_04867286.1| crossover junction endodeoxyribonuclease ATPase [Staphylococcus
           aureus subsp. aureus TCH130]
 gi|258450546|ref|ZP_05698608.1| recombination factor protein RarA [Staphylococcus aureus A5948]
 gi|262048620|ref|ZP_06021503.1| hypothetical protein SAD30_1016 [Staphylococcus aureus D30]
 gi|262051167|ref|ZP_06023391.1| hypothetical protein SA930_1598 [Staphylococcus aureus 930918-3]
 gi|282920175|ref|ZP_06327900.1| conserved hypothetical AAA domain-containing protein yrvN
           [Staphylococcus aureus A9765]
 gi|284024684|ref|ZP_06379082.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus 132]
 gi|304380776|ref|ZP_07363443.1| AAA family ATPase [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|57284695|gb|AAW36789.1| ATPase, AAA family [Staphylococcus aureus subsp. aureus COL]
 gi|150374541|dbj|BAF67801.1| ATPase AAA family protein [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|253728877|gb|EES97606.1| crossover junction endodeoxyribonuclease ATPase [Staphylococcus
           aureus subsp. aureus TCH130]
 gi|257861704|gb|EEV84503.1| recombination factor protein RarA [Staphylococcus aureus A5948]
 gi|259160804|gb|EEW45824.1| hypothetical protein SA930_1598 [Staphylococcus aureus 930918-3]
 gi|259163267|gb|EEW47826.1| hypothetical protein SAD30_1016 [Staphylococcus aureus D30]
 gi|269941113|emb|CBI49499.1| putative ATPase [Staphylococcus aureus subsp. aureus TW20]
 gi|282594523|gb|EFB99508.1| conserved hypothetical AAA domain-containing protein yrvN
           [Staphylococcus aureus A9765]
 gi|302751456|gb|ADL65633.1| DNA-directed DNA polymerase III gamma and tau subunits
           [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|304340652|gb|EFM06585.1| AAA family ATPase [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|315198674|gb|EFU29002.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus CGS01]
 gi|329314302|gb|AEB88715.1| ATPase [Staphylococcus aureus subsp. aureus T0131]
 gi|329728332|gb|EGG64769.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus 21189]
          Length = 424

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 65/326 (19%), Positives = 124/326 (38%), Gaps = 43/326 (13%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +   S +RP+ ++E   Q        +       +   L  ++F GPPG+GKT++A+ ++
Sbjct: 4   EPLASRMRPKNIDEIISQQHLVGPRGIIRRMVDTK--KLTSMIFYGPPGIGKTSIAKAIS 61

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
                 FR  +  V     D+  ++   +   + +L +DEIHRL    ++ L P +E+ +
Sbjct: 62  GSTQYKFRQLNA-VTNTKKDMQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGK 120

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + L+      P         SR  +            PL D           E +     
Sbjct: 121 IVLIGATTSNPYHAINPAIRSRAQIFELY--------PLNDEDVRQALTRAIEDD----- 167

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK--TITREIADAA 249
            + G K     + ++A    + +S+G  R A   L      A+        +T + A   
Sbjct: 168 -ENGLKTYQPKIDEDAMTYFSTQSQGDVRSALNALELAVLSADNDKDGYRHVTLQDAKDC 226

Query: 250 LLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           L + A   DK G    D+  ++   ++  G  V              A+  L    +I+ 
Sbjct: 227 LQKGAFVSDKDGDMHYDV--MSAFQKSIRGSDV------------NAALHYLAR--LIEA 270

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
           G +      R L+ I+++ +G+  P+
Sbjct: 271 GDLPTIV--RRLLVISYEDIGLASPN 294


>gi|81428450|ref|YP_395450.1| recombination factor protein RarA [Lactobacillus sakei subsp. sakei
           23K]
 gi|78610092|emb|CAI55141.1| Putative DNA-replication helicase [Lactobacillus sakei subsp. sakei
           23K]
          Length = 426

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 62/321 (19%), Positives = 116/321 (36%), Gaps = 34/321 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP  ++E  GQ       K+      A+   L  ++  GPPG GKT++A  +A 
Sbjct: 4   PLAYRMRPTNIDEIVGQTHLVGPQKIIRRMVDAK--LLSSMILYGPPGTGKTSIASAIAG 61

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR  +    +K    + A    +    +L +DEIHRL    ++ L P +E  ++ 
Sbjct: 62  STQYAFRMLNAATDSKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPHLESGRI- 120

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           +++G       + IN +    I + T++  +    +    + I+    +        Q+G
Sbjct: 121 VLIGATTENPYITINPA----IRSRTQIFEVHPLNEADIHVAIQRALTDP-------QKG 169

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255
                + + + A   +A  + G  R A   L                    D A++   +
Sbjct: 170 LGDEPVNLDETAEKYLAQVTNGDLRSALNALELAVRST--PKNPETGLIDIDIAVIEECV 227

Query: 256 DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY---MIQQGFIQR 312
            +                    G    + ISA     R +  D    Y   +I+ G +  
Sbjct: 228 QRKAITH------------DKDGDAHYDVISAFQKSVRGSDVDAALHYMGRLIEAGDLPS 275

Query: 313 TPRGRLLMPIAWQHLGIDIPH 333
               R LM +A++ +G+  P 
Sbjct: 276 IS--RRLMTMAYEDVGLANPQ 294


>gi|82751226|ref|YP_416967.1| recombination factor protein RarA [Staphylococcus aureus RF122]
 gi|82656757|emb|CAI81186.1| probable ATPase [Staphylococcus aureus RF122]
          Length = 424

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 66/326 (20%), Positives = 124/326 (38%), Gaps = 43/326 (13%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +   S +RP+ ++E   Q        +       +   L  ++F GPPG+GKT++A+ ++
Sbjct: 4   EPLASRMRPKNIDEIISQQHLVGPRGIIRRMVDTK--KLTSMIFYGPPGIGKTSIAKAIS 61

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
                 FR  +  V     D+  ++   +   + +L +DEIHRL    ++ L P +E+ +
Sbjct: 62  GSTQYKFRQLNA-VTNTKKDMQFVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGK 120

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + L+      P         SR  +            PL D           E E     
Sbjct: 121 IVLIGATTSNPYHAINPAIRSRAQIFELY--------PLNDEDVRQALTRAIEDE----- 167

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK--TITREIADAA 249
            + G K     + ++A    + +S+G  R A   L      A+        +T + A   
Sbjct: 168 -ENGLKTYQPKIDEDAMAYFSTQSQGDVRSALNALELSVLSADNDKDGYRHVTLQDAKDC 226

Query: 250 LLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           L + A   DK G    D+  ++   ++  G  V              A+  L    +I+ 
Sbjct: 227 LQKGAFVSDKDGDMHYDV--MSAFQKSIRGSDV------------NAALHYLAR--LIEA 270

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
           G +      R L+ I+++ +G+  P+
Sbjct: 271 GDLPTIV--RRLLVISYEDIGLASPN 294


>gi|225871301|ref|YP_002747248.1| ATPase [Streptococcus equi subsp. equi 4047]
 gi|225700705|emb|CAW95315.1| putative ATPase [Streptococcus equi subsp. equi 4047]
          Length = 423

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 67/326 (20%), Positives = 114/326 (34%), Gaps = 42/326 (12%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            D     +RPRT+ E  GQ       K+     KA    L  ++  GPPG+GKT++A  +
Sbjct: 2   PDNLAIRMRPRTITEVIGQQHLVGEGKIIDRMVKA--NRLASMILYGPPGIGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           A      FR+ +  +  K      A         VL +DEIHRL    ++ L P +E   
Sbjct: 60  AGTTKYAFRTFNATIDNKKRLQEIAEEAKFSGGLVLLLDEIHRLDKSKQDFLLPLLEHGH 119

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + ++      P         SR  +                            ++   T 
Sbjct: 120 IIMIGATTGNPFFSVTPAIRSRVQIFELEPLSPEEIKQ--------------ALKLAITD 165

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE--VAHAKTITREIADAA 249
            +RG     + + + A   IA  + G  R A + L       +      + I+    + +
Sbjct: 166 KERGFA-FDVTLDEAAFDFIATATNGDLRAAYQSLDLAVMSTQPDTEGIRHISLNTVENS 224

Query: 250 LLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           L R    +DK G    D   L+ + ++  G  V              ++       +I+ 
Sbjct: 225 LQRSYITMDKDGDGHYD--ILSALQKSIRGSDV------------NASLHYAAR--LIEA 268

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
           G +      R L  IA++ +G+  P 
Sbjct: 269 GDLP--SLARRLTIIAYEDIGLANPE 292


>gi|258448784|ref|ZP_05696896.1| recombination protein MgsA [Staphylococcus aureus A6224]
 gi|257858062|gb|EEV80951.1| recombination protein MgsA [Staphylococcus aureus A6224]
          Length = 424

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 65/326 (19%), Positives = 124/326 (38%), Gaps = 43/326 (13%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +   S +RP+ ++E   Q        +       +   L  ++F GPPG+GKT++A+ ++
Sbjct: 4   EPLASRMRPKNIDEIISQQHLVGPKGIIRRMVDTK--KLTSMIFYGPPGIGKTSIAKAIS 61

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
                 FR  +  V     D+  ++   +   + +L +DEIHRL    ++ L P +E+ +
Sbjct: 62  GSTQYKFRQLNA-VTNTKKDMQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGK 120

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + L+      P         SR  +            PL D           E +     
Sbjct: 121 IVLIGATTSNPYHAINPAIRSRAQIFELY--------PLNDEDVRQALTRAIEDD----- 167

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK--TITREIADAA 249
            + G K     + ++A    + +S+G  R A   L      A+        +T + A   
Sbjct: 168 -ENGLKTYQSKIDEDAMTYFSTQSQGDVRNALNALELAVLSADNDKDGYRHVTLQDAKDC 226

Query: 250 LLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           L + A   DK G    D+  ++   ++  G  V              A+  L    +I+ 
Sbjct: 227 LQKGAFVSDKDGDMHYDV--MSAFQKSIRGSDV------------NAALHYLAR--LIEA 270

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
           G +      R L+ I+++ +G+  P+
Sbjct: 271 GDLPTIV--RRLLVISYEDIGLASPN 294


>gi|212542167|ref|XP_002151238.1| AAA family ATPase, putative [Penicillium marneffei ATCC 18224]
 gi|210066145|gb|EEA20238.1| AAA family ATPase, putative [Penicillium marneffei ATCC 18224]
          Length = 534

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 69/332 (20%), Positives = 116/332 (34%), Gaps = 63/332 (18%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP++L+E  GQ        +     +   + +  ++  G  G GKTT+A+V+A 
Sbjct: 124 PLAERMRPKSLDEVCGQD-LVGPNGILRSLIEQ--DRVPSMILWGGAGTGKTTIARVIAC 180

Query: 77  ELGVNFRSTSGPV--IAKAGDLAALLTN----LEDRDVLFIDEIHRLSIIVEEILYPAME 130
            +G  F   +     IA+   + A   N       + +LF DEIHR S   +++L   +E
Sbjct: 181 MVGSRFVEINSTTSGIAECKKIFAEARNELGLTGRKTILFCDEIHRFSKTQQDVLLGPVE 240

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
              + L+    E PS +     LSR                                +DL
Sbjct: 241 SGVVTLIAATTENPSFKVQNALLSRCRTFTL---------------------EKLTDDDL 279

Query: 189 KTIVQRGAKLTGLAV------TDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            +I++R     G +        DE    +A  S G  R A  LL      +       +T
Sbjct: 280 TSILKRALATEGSSYSPSELVDDELIRYLATFSDGDARTALNLLELAMGLSNRPG---MT 336

Query: 243 REIADAALLRL-AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           + +   +L +    D+ G    D                   TISA     R +  D   
Sbjct: 337 KAVLKKSLTKTLVYDRAGDQHYD-------------------TISAFHKSIRGSDADAAL 377

Query: 302 PYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
            Y+ +       P    R L+ +A + +G+  
Sbjct: 378 YYLARMIQSGEDPLYIARRLIVVASEDIGLAD 409


>gi|294085984|ref|YP_003552744.1| ATPase [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292665559|gb|ADE40660.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 463

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 74/349 (21%), Positives = 123/349 (35%), Gaps = 61/349 (17%)

Query: 1   MMDREGLLSRN---VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           +M       +N     ++      LRPRTL++  GQ           +   AR   L  +
Sbjct: 21  LMSEFDFGDKNKDVPPKDVPLAEALRPRTLDDVVGQDGLLGEDGRLRQM-LARGN-LASI 78

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFI 111
           +  GPPG GKTT+A+++A    + F   S  V     DL  + T  E       R +LF+
Sbjct: 79  ILWGPPGTGKTTIARLLADAASMEFEPVSA-VFDGVADLRKIFTRAETRLRDGKRTLLFV 137

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+HR +   ++ L P +ED  + L+    E PS       LSR  ++            
Sbjct: 138 DEVHRFNKAQQDGLLPRVEDGTVTLVGATTENPSFALNGALLSRAQVLVLERLNNAALAS 197

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           +  R    I  +                   LA+ + A   +   + G  R    +   +
Sbjct: 198 ILQRVEAHIGAS-------------------LALDENARAALIAMADGDGRYLLNMASLL 238

Query: 230 RDFAE--VAHAKTITREIADAALLRLAIDKMGFDQLDL---RYLTMIARNFGGGPVGIET 284
            D     +     +TR +   A    A DK G    +L    + T+ + +   G   +  
Sbjct: 239 VDVPATPLLDLDAMTRLVTSKA---PAFDKTGDQHYNLMSALHKTLRSSDADAGLYWLAR 295

Query: 285 ISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           + AG  +P   +                    R L   A + +G+  P 
Sbjct: 296 MLAGGEDPHYIL--------------------RRLTRFASEDIGLAEPE 324


>gi|327459576|gb|EGF05922.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
           SK1]
 gi|332364872|gb|EGJ42641.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
           SK1059]
          Length = 422

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 67/326 (20%), Positives = 121/326 (37%), Gaps = 42/326 (12%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            +     +RP  +++  GQ       K+     +A    L  ++  GPPG+GKT++A  +
Sbjct: 2   PENLALRMRPTDIDQIIGQQHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           A      FR+ +  V +K      A         VL +DEIHRL    ++ L P +E   
Sbjct: 60  AGTTKFAFRTFNATVDSKKRLQEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGL 119

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + ++    E P         SR  +            PL +            I+     
Sbjct: 120 VIMIGATTENPFFSVTPAIRSRVQIFEL--------EPLSNDDIRTA------IQLALKD 165

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA--EVAHAKTITREIADAA 249
            +RG     + + D+A   IA+ + G  R A   L         +    + IT ++ + +
Sbjct: 166 KERGFD-FSVELDDDALDFIAISTNGDLRSAYNSLDLAVLSTPEDDKDIRHITLDVMENS 224

Query: 250 LLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           L +    +DK G    D+  L+ + ++  G  V              ++       +I+ 
Sbjct: 225 LQKSYITMDKDGDGHYDV--LSALQKSIRGSDV------------NASLHYAAR--LIEA 268

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
           G +      R L  IA++ +G+  P 
Sbjct: 269 GDLP--SLARRLTVIAYEDIGLANPD 292


>gi|148268108|ref|YP_001247051.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus JH9]
 gi|150394176|ref|YP_001316851.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus JH1]
 gi|257793701|ref|ZP_05642680.1| recombination protein MgsA [Staphylococcus aureus A9781]
 gi|258446870|ref|ZP_05695024.1| recombination protein MgsA [Staphylococcus aureus A6300]
 gi|258453603|ref|ZP_05701581.1| recombination protein MgsA [Staphylococcus aureus A5937]
 gi|282928261|ref|ZP_06335866.1| ATPase [Staphylococcus aureus A10102]
 gi|295406749|ref|ZP_06816554.1| ATPase [Staphylococcus aureus A8819]
 gi|297245669|ref|ZP_06929534.1| ATPase [Staphylococcus aureus A8796]
 gi|147741177|gb|ABQ49475.1| Recombination protein MgsA [Staphylococcus aureus subsp. aureus
           JH9]
 gi|149946628|gb|ABR52564.1| AAA ATPase central domain protein [Staphylococcus aureus subsp.
           aureus JH1]
 gi|257787673|gb|EEV26013.1| recombination protein MgsA [Staphylococcus aureus A9781]
 gi|257854445|gb|EEV77394.1| recombination protein MgsA [Staphylococcus aureus A6300]
 gi|257864334|gb|EEV87084.1| recombination protein MgsA [Staphylococcus aureus A5937]
 gi|282590068|gb|EFB95150.1| ATPase [Staphylococcus aureus A10102]
 gi|285817309|gb|ADC37796.1| ATPase related to helicase subunit of the Holliday junction
           resolvase [Staphylococcus aureus 04-02981]
 gi|294968496|gb|EFG44520.1| ATPase [Staphylococcus aureus A8819]
 gi|297177320|gb|EFH36572.1| ATPase [Staphylococcus aureus A8796]
 gi|312830014|emb|CBX34856.1| ATPase family associated with various cellular activities (AAA)
           family protein [Staphylococcus aureus subsp. aureus
           ECT-R 2]
 gi|315129910|gb|EFT85900.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|329727592|gb|EGG64048.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus 21172]
          Length = 424

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 65/326 (19%), Positives = 124/326 (38%), Gaps = 43/326 (13%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +   S +RP+ ++E   Q        +       +   L  ++F GPPG+GKT++A+ ++
Sbjct: 4   EPLASRMRPKNIDEIISQQHLVGPKGIIRRMVDTK--KLTSMIFYGPPGIGKTSIAKAIS 61

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
                 FR  +  V     D+  ++   +   + +L +DEIHRL    ++ L P +E+ +
Sbjct: 62  GSTQYKFRQLNA-VTNTKKDMQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGK 120

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + L+      P         SR  +            PL D           E +     
Sbjct: 121 IVLIGATTSNPYHAINPAIRSRAQIFELY--------PLNDEDVRQALTRAIEDD----- 167

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK--TITREIADAA 249
            + G K     + ++A    + +S+G  R A   L      A+        +T + A   
Sbjct: 168 -ENGLKTYQPKIDEDAMTYFSTQSQGDVRNALNALELAVLSADNDKDGYRHVTLQDAKDC 226

Query: 250 LLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           L + A   DK G    D+  ++   ++  G  V              A+  L    +I+ 
Sbjct: 227 LQKGAFVSDKDGDMHYDV--MSAFQKSIRGSDV------------NAALHYLAR--LIEA 270

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
           G +      R L+ I+++ +G+  P+
Sbjct: 271 GDLPTIV--RRLLVISYEDIGLASPN 294


>gi|288918205|ref|ZP_06412560.1| AAA ATPase central domain protein [Frankia sp. EUN1f]
 gi|288350375|gb|EFC84597.1| AAA ATPase central domain protein [Frankia sp. EUN1f]
          Length = 476

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 78/349 (22%), Positives = 129/349 (36%), Gaps = 46/349 (13%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           ++  ++      + LRPR+L+E  GQ    +         +        V+  GPPG GK
Sbjct: 8   VTDTLAASGPLAARLRPRSLDEVVGQRHLLAEGSPLRRLVEGGGTT--SVVLWGPPGTGK 65

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSII 120
           TTLA +V+R     FR  S  V A   D+ A++    D       R VLFIDE+HR +  
Sbjct: 66  TTLAHIVSRATRRRFRELSA-VTAGVKDVRAVIDEARDTLFMSGVRTVLFIDEVHRFTRT 124

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR----- 173
            ++ L P++E   + L+    E P    V   LSR  L+            L +R     
Sbjct: 125 QQDALLPSVEKGWVTLVAATTENPFFSVVAPLLSRSLLLTLEPLSDADIADLVERAVADP 184

Query: 174 --FGIPIRLNFYEIEDLKTIV----QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             +G  + L     + L  +     +R             A    + + G    A   + 
Sbjct: 185 RGYGGRLTLTEEARDHLVRLSGGDGRRALTALEAGAEAALAAARGVDTGGPDADADAGID 244

Query: 228 RVRDFAEVAHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETI 285
                  V  A  +  E+ + A+ R A   D+ G    D+  ++   ++  GG V     
Sbjct: 245 TADGGDSVGEAVPLRLELLERAVDRSAVRYDREGDQHYDV--VSAFIKSMRGGDV----- 297

Query: 286 SAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
                       D    Y+ +       PR   R ++ +A + +G+  P
Sbjct: 298 ------------DAALHYLARMLEAGEDPRFVARRMIILASEDVGMADP 334


>gi|94991276|ref|YP_599376.1| recombination factor protein RarA [Streptococcus pyogenes
           MGAS10270]
 gi|94544784|gb|ABF34832.1| ATPase, AAA family [Streptococcus pyogenes MGAS10270]
          Length = 422

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 69/326 (21%), Positives = 119/326 (36%), Gaps = 42/326 (12%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            D     +RP+T+ E  GQ       K+     +A    L  ++  GPPG+GKT++A  +
Sbjct: 2   PDHLALRMRPKTISEVIGQKHLVGEGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           A      FR+ +  + +K      A         VL +DEIHRL  I ++ L P +E+  
Sbjct: 60  AGTTRYAFRTFNATIDSKKRLQEIAEEAKFSGGLVLLLDEIHRLDKIKQDFLLPLLENGT 119

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + ++    E P         SR  +            PL +            I+   + 
Sbjct: 120 IIMIGATTENPFFSVTPAIRSRVQIFEL--------EPLSNEDIKTA------IQLAISD 165

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT--REIADAA 249
            +RG     + + DEA   I   + G  R A   L             +     E  + +
Sbjct: 166 KERGFPFL-VTIDDEALDFIVTATNGDLRSAYNSLDLAVMSTSPNEDSSRHISLETMENS 224

Query: 250 LLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           L R    +DK G    D+  L+ + +   G  V              ++       +++ 
Sbjct: 225 LQRSYITMDKDGDGHYDV--LSALQKAIRGSDV------------NASLHYAAR--LVEA 268

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
           G +      R L+ IA++ +G+  P 
Sbjct: 269 GDLP--SLARRLIVIAYEDIGLANPD 292


>gi|257082202|ref|ZP_05576563.1| recombination factor protein RarA [Enterococcus faecalis E1Sol]
 gi|257416415|ref|ZP_05593409.1| recombination factor protein RarA [Enterococcus faecalis AR01/DG]
 gi|256990232|gb|EEU77534.1| recombination factor protein RarA [Enterococcus faecalis E1Sol]
 gi|257158243|gb|EEU88203.1| recombination factor protein RarA [Enterococcus faecalis ARO1/DG]
          Length = 425

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 68/327 (20%), Positives = 116/327 (35%), Gaps = 49/327 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RPR L+E  GQ       K+     +A+   L  ++  GPPG GKT++A  +A 
Sbjct: 4   PLAYRMRPRHLDEVVGQQHLVDPGKIIRRMVEAK--MLSSMILYGPPGTGKTSIASAIAG 61

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR  +     K    + A    +    +L +DEIHRL    ++ L P +E+ ++ 
Sbjct: 62  STNYAFRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPHLENGRI- 120

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ-- 193
           +M+G       + IN                   ++ R  I       E +  + I +  
Sbjct: 121 IMIGATTENPYITIN-----------------PAIRSRTQIFEVKPLTETDIQQAIQEAL 163

Query: 194 ----RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT--ITREIAD 247
               RG     + + ++A   +   + G  R A   L                IT  I +
Sbjct: 164 TDSTRGLGDYPVHLEEKALQHLTRATNGDLRSALNGLELAVKSTPKNEQGEIKITLPIIE 223

Query: 248 AALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
             + R A   DK G    D      +   F     G +  +A                ++
Sbjct: 224 ECVQRKALTHDKDGDAHYD------VISAFQKSIRGSDVDAALH----------YLGRLV 267

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           + G +      R LM IA++ +G+  P
Sbjct: 268 EAGDLPIIC--RRLMVIAYEDIGLGNP 292


>gi|330719421|ref|ZP_08314021.1| recombination factor protein RarA [Leuconostoc fallax KCTC 3537]
          Length = 428

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 68/325 (20%), Positives = 114/325 (35%), Gaps = 41/325 (12%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           ++     +RP+ +E   GQ       K+     +A    L  ++  GPPG GKT++A  +
Sbjct: 3   QEPLAYRMRPKKIEHIVGQQHLVGKNKIIWRMVQAH--RLSSMILYGPPGTGKTSIASAI 60

Query: 75  ARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           A      FR  +    +K    + A    +    VL +DEIHRL    ++ L P +E   
Sbjct: 61  AGSSKYAFRVLNAATDSKKDLQIVAEEAKMSGSVVLLLDEIHRLDKTKQDFLLPHLESGN 120

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + L+    E P         SR  +            PL +             +     
Sbjct: 121 IILIGATTENPYINVTPAIRSRTQIFQVY--------PLTENDIHQAIQRTLNDK----- 167

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI--TREIADAA 249
            + G     + + D+A  ++   + G  R A   L          +  TI  T    +  
Sbjct: 168 -ENGLGNYAVTIDDQAMKQLTQATNGDLRSALNALELAVLSTSPENDDTIHLTLSAIEEV 226

Query: 250 LLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
             R A+  DK G    D+  ++ + ++  G  V      A L      IE      +I  
Sbjct: 227 TQRKALSADKDGDAHYDV--ISALQKSIRGSDVD-----AALHYAARIIESGDLNILI-- 277

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIP 332
                    R L  IA++ +G+  P
Sbjct: 278 ---------RRLAVIAYEDIGLANP 293


>gi|254294413|ref|YP_003060436.1| recombination factor protein RarA [Hirschia baltica ATCC 49814]
 gi|254042944|gb|ACT59739.1| AAA ATPase central domain protein [Hirschia baltica ATCC 49814]
          Length = 440

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 67/344 (19%), Positives = 112/344 (32%), Gaps = 56/344 (16%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D       + +        LRP+TL +  GQ                  + L  ++  
Sbjct: 1   MTDLFSAAGLDDNAPQPLADRLRPKTLSDVIGQDHLIGADGPIGRM--LANKRLASMILW 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEI 114
           GPPG+GKTT+AQ++A   G+ F   S  + +   DL A     E R       +LF+DEI
Sbjct: 59  GPPGVGKTTIAQLLAAGAGLEFDPISA-IFSGVKDLRAAFDRAEKRRQIGKGTLLFVDEI 117

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++   P +E   + L+    E PS       LSR  ++            L  
Sbjct: 118 HRFNKAQQDGFLPFVERGIVTLVGATTENPSFELNGALLSRCQVMVLKRLEDTALEKL-- 175

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
                          L  +     +   L+    A+ +    + G  R    L   V   
Sbjct: 176 ---------------LLRVEAETGEKLALSNEARASLK--DMADGDGRYLLNLAEEVLSL 218

Query: 233 AEVAHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
             V     +  +     L + A   DK   +  ++                    SA   
Sbjct: 219 GGV---SPLNPDELAKLLQKRAPAYDKDRDEHYNMA-------------------SALHK 256

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
             R +  D    +  +       P    R ++ +A + +G+  P
Sbjct: 257 SVRGSDPDAALYWFCRMLEGGEDPLYLARRIVRMASEEVGLADP 300


>gi|91094825|ref|XP_971125.1| PREDICTED: similar to werner helicase interacting protein
           [Tribolium castaneum]
          Length = 494

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 70/326 (21%), Positives = 115/326 (35%), Gaps = 47/326 (14%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF- 82
           P+ L++F GQ        V     +     + +++  GPPG GKT+L+ V+      N  
Sbjct: 100 PKCLDDFMGQSHVLGENTVLRTLLEKGD--IPNMVLWGPPGCGKTSLSGVIQGICKSNPT 157

Query: 83  ---RSTSGPVIAKAGDL------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
                +     A   D+      A L      R VLF+DEIHR +   ++I    +E   
Sbjct: 158 KLKFVSLCAATAGVKDVQNIVSAAKLQQKFGCRTVLFMDEIHRFNKKQQDIFLLHVEKGD 217

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + L+    E PS       LSR  +I            + +R      +          +
Sbjct: 218 IILVGATTENPSFTVNSALLSRCRVIVLQKLDPDCLYQILERGARNFNV---------EV 268

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           V +GA+  G AV  +A   +A  S G  RIA   L+ V  + E  + K +T E     + 
Sbjct: 269 VDKGARSKGFAVQADALKWLADISDGDARIALGNLQLVLQYNEDKN-KVVTIEDIKEKIK 327

Query: 252 RLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           +     D+ G +                       ISA     R +  +    +  +   
Sbjct: 328 KSHLLYDRKGEEHY-------------------NVISAMHKSIRGSDPNAALYWTTRMIV 368

Query: 310 IQRTPR--GRLLMPIAWQHLGIDIPH 333
               P    R ++  A + +G   P 
Sbjct: 369 SGEDPLYIARRMVRAASEDIGNADPR 394


>gi|116618925|ref|YP_819296.1| recombination factor protein RarA [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116097772|gb|ABJ62923.1| Recombination protein MgsA [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 428

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 69/331 (20%), Positives = 121/331 (36%), Gaps = 53/331 (16%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           ++     +RP  +EE  GQ       K+      A    L  ++  GPPG GKT++A  +
Sbjct: 3   QEPLAYRMRPTKIEEIVGQQHLVGEGKIIWRMVAAH--RLSSMILYGPPGTGKTSIASAI 60

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           A      FR  +    ++  DL  ++   +     VL +DEIHRL+ I ++ L P +E  
Sbjct: 61  AGSSKYAFRMLNAATDSQ-KDLQIVVEEAKMSGTVVLLLDEIHRLNKIKQDFLLPHLESG 119

Query: 133 QLDLM--VGEGPSARSVKINLSR-----FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
            + L+    E P         SR        ++ T     +   + D+            
Sbjct: 120 AIILIGATTENPYINVTPAIRSRTQIFEVNSLSETDITSAVKRAIADK------------ 167

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR--DFAEVAHAKTITR 243
                  ++G     + + D A  +++  + G  R A   L        A+      I+ 
Sbjct: 168 -------EKGLGQYNIVLDDNAMLQLSRATNGDLRSALNGLELAVLSTKADKKGVVHISL 220

Query: 244 EIADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
            I +  + R A+  DK G    D+  ++ + ++  G         A L      IE    
Sbjct: 221 PIIEETVQRKALSADKDGDAHYDV--ISALQKSIRGSDTD-----AALHYAARIIESGDL 273

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           P +            R L  IA++ +G+  P
Sbjct: 274 PIL-----------ARRLTVIAYEDIGLANP 293


>gi|270006572|gb|EFA03020.1| hypothetical protein TcasGA2_TC010443 [Tribolium castaneum]
          Length = 478

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 70/326 (21%), Positives = 115/326 (35%), Gaps = 47/326 (14%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF- 82
           P+ L++F GQ        V     +     + +++  GPPG GKT+L+ V+      N  
Sbjct: 100 PKCLDDFMGQSHVLGENTVLRTLLEKGD--IPNMVLWGPPGCGKTSLSGVIQGICKSNPT 157

Query: 83  ---RSTSGPVIAKAGDL------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
                +     A   D+      A L      R VLF+DEIHR +   ++I    +E   
Sbjct: 158 KLKFVSLCAATAGVKDVQNIVSAAKLQQKFGCRTVLFMDEIHRFNKKQQDIFLLHVEKGD 217

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + L+    E PS       LSR  +I            + +R      +          +
Sbjct: 218 IILVGATTENPSFTVNSALLSRCRVIVLQKLDPDCLYQILERGARNFNV---------EV 268

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           V +GA+  G AV  +A   +A  S G  RIA   L+ V  + E  + K +T E     + 
Sbjct: 269 VDKGARSKGFAVQADALKWLADISDGDARIALGNLQLVLQYNEDKN-KVVTIEDIKEKIK 327

Query: 252 RLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           +     D+ G +                       ISA     R +  +    +  +   
Sbjct: 328 KSHLLYDRKGEEHY-------------------NVISAMHKSIRGSDPNAALYWTTRMIV 368

Query: 310 IQRTPR--GRLLMPIAWQHLGIDIPH 333
               P    R ++  A + +G   P 
Sbjct: 369 SGEDPLYIARRMVRAASEDIGNADPR 394


>gi|326562332|gb|EGE12658.1| recombination factor protein RarA [Moraxella catarrhalis 103P14B1]
 gi|326575536|gb|EGE25461.1| recombination factor protein RarA [Moraxella catarrhalis 101P30B1]
          Length = 412

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 73/325 (22%), Positives = 114/325 (35%), Gaps = 48/325 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP TL+   GQ    S           R   L  ++  G  G+GKTTLA ++A 
Sbjct: 3   PLAERMRPTTLDAVIGQTHLLSEGAPIFN--IVRQGFLPSLILHGSAGIGKTTLAMLLAD 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTN----LEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
            +G  FR  S  V +   +L  +L +      +  V+F+DEIHR +   ++ L  A+E  
Sbjct: 61  AVGRPFRPLSA-VSSGVKELREVLRSDDGLFHEPPVVFVDEIHRFNKAQQDALLQAVETG 119

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           ++ L+    E PS       LSR  +            PL D     + +     + L  
Sbjct: 120 EITLIGATTENPSFSVNNALLSRCQVYKL--------EPLSDDEIYALIVRAIRQDTL-- 169

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
                  L    +       +   S+G  R A  LL  V    E       +     A  
Sbjct: 170 -------LKTKDIQINNLAALIDLSQGDGRRALNLLELVAAAPEPIIIDNASVAAV-AGQ 221

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
             +  DK G    DL                   ISA +   R +  D    +M +    
Sbjct: 222 PLVRYDKSGDGHYDL-------------------ISAMIKSVRGSDADAAVYWMARILAA 262

Query: 311 QRTPR--GRLLMPIAWQHLGIDIPH 333
              P    R L+ +A + +G+  P+
Sbjct: 263 GEDPAFVARRLVILASEDIGLANPN 287


>gi|294811570|ref|ZP_06770213.1| recombination factor protein RarA [Streptomyces clavuligerus ATCC
           27064]
 gi|326440045|ref|ZP_08214779.1| recombination factor protein RarA [Streptomyces clavuligerus ATCC
           27064]
 gi|294324169|gb|EFG05812.1| recombination factor protein RarA [Streptomyces clavuligerus ATCC
           27064]
          Length = 454

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 80/360 (22%), Positives = 130/360 (36%), Gaps = 72/360 (20%)

Query: 2   MDREGLLSRNVSQEDADIS------LLRPRTLEEFTGQVEAC---SNLKVFIEAAKARAE 52
           M+ +   +   ++++ D S       +RPRTL+E  GQ       S L+  +        
Sbjct: 1   MEPDLFTAAAEARQEKDPSSSPLAVRMRPRTLDEVVGQRHLLKPGSPLRRLVGEGPGGPA 60

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------ED 105
               V+  GPPG+GKTTLA VV+      F   S  + A   ++ A++            
Sbjct: 61  GASSVILWGPPGIGKTTLAYVVSAATDKRFVELSA-ITAGVKEVRAVIDGARRAAGGFGK 119

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRV 163
             VLF+DEIHR S   ++ L PA+E+  + L+    E P    +            +  +
Sbjct: 120 ETVLFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYFSVISP--------LLSRSL 171

Query: 164 GLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAG 223
            L   PL D             +DL+ ++ R  +            E A       R+AG
Sbjct: 172 LLTLEPLTD-------------DDLRGLLARALREERGLGGALTLPEDAEAHLL--RVAG 216

Query: 224 RLLRRVRDFAEVAHAKTITREIADAAL---------LRLAIDKMGFDQLDLRYLTMIARN 274
              RR     E A    + +  A+  L           +A D+ G    D+   + + ++
Sbjct: 217 GDARRALTALEAAAGAALDKGEAEITLGTVEETVDRAAVAYDRDGDQHYDVA--SALIKS 274

Query: 275 FGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
             G  V                 D    Y+ +       PR   R LM  A + +G+  P
Sbjct: 275 IRGSDV-----------------DAALHYLARMIEAGEDPRFIARRLMISASEDIGLADP 317


>gi|160914951|ref|ZP_02077165.1| hypothetical protein EUBDOL_00959 [Eubacterium dolichum DSM 3991]
 gi|158433491|gb|EDP11780.1| hypothetical protein EUBDOL_00959 [Eubacterium dolichum DSM 3991]
          Length = 429

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 68/322 (21%), Positives = 127/322 (39%), Gaps = 45/322 (13%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +     +RP  L+E  GQ       KV  +  +     L  ++F GPPG GKTTLA V+A
Sbjct: 6   EPLAFSMRPSVLDEIIGQQHLIGEGKVLRKCVE--NNMLFSMIFYGPPGTGKTTLAMVLA 63

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
             L   +R  +  V     DL  +    +     V+ +DE+HRL+   +++L P +ED  
Sbjct: 64  NTLNKPYRLFNA-VSGNKKDLDRIFEEAKYFPGLVVIVDEVHRLNKDKQDLLLPHIEDGS 122

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           + +M+G   S     IN +    I +   +  +    Q+     +R      + L+    
Sbjct: 123 I-IMIGATTSNPLHAINPA----IRSRCHLFEVKALTQEDIKQALRNAIQSPKGLQN--- 174

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
                  +++ ++A   IA    G  R A  +L       +     +    +  +++  +
Sbjct: 175 ------EVSIEEDALDIIARHCNGDIRYALNILEICAIACD--GIISKDLVMQYSSIPNM 226

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGL---SEPRDAIEDLIEPYMIQQGFI 310
           ++D+ G    D+  L+   ++  G  V       G+   +   D+IE             
Sbjct: 227 SMDRDGDGYYDV--LSAFQKSIRGSDVDAALYYLGIMIEANDMDSIE------------- 271

Query: 311 QRTPRGRLLMPIAWQHLGIDIP 332
                 R L+  A++ +G+  P
Sbjct: 272 ------RRLLVTAYEDIGLGNP 287


>gi|288574502|ref|ZP_06392859.1| AAA ATPase central domain protein [Dethiosulfovibrio peptidovorans
           DSM 11002]
 gi|288570243|gb|EFC91800.1| AAA ATPase central domain protein [Dethiosulfovibrio peptidovorans
           DSM 11002]
          Length = 423

 Score =  129 bits (325), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 67/334 (20%), Positives = 117/334 (35%), Gaps = 55/334 (16%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           E      +RP +L+++ G ++       L+V +E        +   +  GPPG+GKT L 
Sbjct: 5   EIPLAERMRPSSLDQYIGHLDVMGPTGSLRVLLE-----KGVVPSCILYGPPGVGKTALV 59

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEI 124
           +++A          +  V AK   L  L+              V F+DEI+  +   +  
Sbjct: 60  RLMASVTDRELFEINA-VSAKVSQLRDLIEKAARFKALSGRSAVAFVDEIYHFNKGQQNA 118

Query: 125 LYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           L P++E   + L+    E P     K  LSR  + +          PL+    + I  N 
Sbjct: 119 LLPSVEKGDVVLVGTTTENPWFEINKTLLSRLLVFSL--------KPLEKDDLVGIMNNA 170

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
              E      ++G    G+   D    E+A  + G  R A   L  +      +    ++
Sbjct: 171 LSDE------EKGLGKLGMKWEDGVLEELASSASGDARQALTRLEYLVRVISASGGSLLS 224

Query: 243 REIADAAL--LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
            +     L    +  DK G D                     E ISA +   R +  D  
Sbjct: 225 LDRVRKELPAAFVRHDKDGDDHY-------------------EVISAFIKSIRGSDPDAA 265

Query: 301 EPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
             ++ +        R   R ++  A + +G+  P
Sbjct: 266 VYWLARLLEAGEDVRFIARRMIISAAEDIGLADP 299


>gi|227505015|ref|ZP_03935064.1| crossover junction endodeoxyribonuclease [Corynebacterium striatum
           ATCC 6940]
 gi|227198379|gb|EEI78427.1| crossover junction endodeoxyribonuclease [Corynebacterium striatum
           ATCC 6940]
          Length = 416

 Score =  129 bits (325), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 71/321 (22%), Positives = 119/321 (37%), Gaps = 48/321 (14%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP++L+E  GQ       K      +   EA   V+  GPPG GKTT+A ++A+ +G N
Sbjct: 1   MRPQSLDEVLGQGHLLEKGKPLRRLIEGSGEA--SVILYGPPGTGKTTIASLIAKAIGQN 58

Query: 82  FRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F   S  + +    +  ++T+         R VLFIDE+HR S   ++ L  A+E+  + 
Sbjct: 59  FVGLSA-LDSGVKQVREVITHARQELIHGRRTVLFIDEVHRFSKTQQDALLAAVENRTVL 117

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           L+    E PS   V            +  + L   PL D     +       E       
Sbjct: 118 LVAATTENPSFSVVAP--------LLSRSLLLQLEPLDDASLRALAQKALTSE------- 162

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           RG     ++ ++EA   + + + G  R     L    +        T      +     +
Sbjct: 163 RGLAG-RISASEEALEHLVLLAGGDARRTLTYLEAAAEAVPDGGELTPQIIRDNVNRAVV 221

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
             D+ G    D+                   +SA +   R +  D    Y+ +       
Sbjct: 222 RYDRDGDQHYDV-------------------VSAFIKSIRGSDVDAALHYLARMVEAGED 262

Query: 314 PR--GRLLMPIAWQHLGIDIP 332
           PR   R L+  A + +G+  P
Sbjct: 263 PRFIARRLIVHASEDIGMADP 283


>gi|189346365|ref|YP_001942894.1| recombination factor protein RarA [Chlorobium limicola DSM 245]
 gi|189340512|gb|ACD89915.1| AAA ATPase central domain protein [Chlorobium limicola DSM 245]
          Length = 449

 Score =  129 bits (325), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 76/335 (22%), Positives = 121/335 (36%), Gaps = 50/335 (14%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACS---NLKVFIEAAKARAEALDHVLFVGPPGLG 66
               Q       +RPRTL++ +GQ         L+ F+E+ +     L  ++  GPPG G
Sbjct: 21  STPEQYKPLAERVRPRTLDDLSGQAHLVGKDGPLRSFLESGR-----LPSMILWGPPGSG 75

Query: 67  KTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           KTTLA++ A  L   F   S        + KA D A        R +LFIDEIHR +   
Sbjct: 76  KTTLAEICATSLHYRFEQLSAIDAGVKEVRKALDGARQARRSGQRTILFIDEIHRFNKAQ 135

Query: 122 EEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           ++ L  A+E   + L+    E PS       LSR  +         +  PL         
Sbjct: 136 QDTLLHAIEQGLITLIGATTENPSFEVNGALLSRMQV--------YILQPL--------- 178

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
                 +D++ +++R      +        E           AG   R+    A  A A 
Sbjct: 179 ----SEQDIEAVIRRAVACDVIMKEKRLVLEDPAFVLQ---FAGGDARK-ALNAVEAAAA 230

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            +  E ++  L R  + +         Y         G     +TISA +   R +  D 
Sbjct: 231 LVPLESSEVVLTRELL-ERALQHKAPHY-------DKGAEAHYDTISAFIKSMRGSDPDA 282

Query: 300 IEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
              ++ +       P    R ++  A + +G   P
Sbjct: 283 ALFWLARMIEGGEDPLFIARRMVIFASEDIGNADP 317


>gi|150025417|ref|YP_001296243.1| recombination factor protein RarA [Flavobacterium psychrophilum
           JIP02/86]
 gi|149771958|emb|CAL43432.1| Putative AAA family ATPase [Flavobacterium psychrophilum JIP02/86]
          Length = 425

 Score =  129 bits (325), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 60/304 (19%), Positives = 102/304 (33%), Gaps = 36/304 (11%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E      +RP+ L+++  Q                    +  ++F GPPG GKTTL+Q++
Sbjct: 2   EAPLAERIRPQNLQDYISQSHLVGQNGSLTHQIAK--GIIPSLIFWGPPGTGKTTLSQII 59

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLED--------RDVLFIDEIHRLSIIVEEILY 126
           A+E    F   S  + +   D+  ++   +           +LFIDEIHR S   ++ L 
Sbjct: 60  AQESKRPFYILSA-INSGVKDIRDVIEKAKQSGGLFTTKNPILFIDEIHRFSKSQQDSLL 118

Query: 127 PAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
            A+E   + L+    E PS   +   LSR  +             L  R           
Sbjct: 119 AAVEKGWITLIGATTENPSFEVIPALLSRCQVYILNAFSKQDLEALLHRAITTDTF---- 174

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMR-SRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
                               + A  E  +R S G  R    +   V +     H      
Sbjct: 175 --------------LKTKNIELAETEALLRLSGGDGRKLLNIFELVVNATNEDHILITNE 220

Query: 244 EIADAALLRLA-IDKMGFDQLDLRYLTMIARNFGGG-PVGIETISAGLSEPRDAIEDLIE 301
           ++           DK G    D   ++   ++  G  P G     A + E  + ++ +  
Sbjct: 221 KVMQLVQKNTVLYDKTGEQHYD--IVSAFIKSIRGSDPNGAVYWLARMIEGGEDVKFIAR 278

Query: 302 PYMI 305
             +I
Sbjct: 279 RMLI 282


>gi|329850245|ref|ZP_08265090.1| ATPase family associated with various cellular activities AAA
           family protein [Asticcacaulis biprosthecum C19]
 gi|328840560|gb|EGF90131.1| ATPase family associated with various cellular activities AAA
           family protein [Asticcacaulis biprosthecum C19]
          Length = 448

 Score =  129 bits (325), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 70/339 (20%), Positives = 113/339 (33%), Gaps = 54/339 (15%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
             LL++           LRP+ + E  GQ          I    AR   L  ++  GPPG
Sbjct: 14  NSLLAQVDDAAKPLADRLRPKNVAEVVGQDHLLGPDG-AISRLIARG-FLPSLILWGPPG 71

Query: 65  LGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
           +GKTT+A+++A   G  F+  S        + KA + A     +  R VLF+DEIHR + 
Sbjct: 72  VGKTTIARLLAEAAGYEFQQISAVFSGVADLKKAFEQAQQRHQMGQRTVLFVDEIHRFNR 131

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             ++   P +E   + L+    E PS       LSR  +                     
Sbjct: 132 AQQDSFLPFVEAGVVTLIGATTENPSFELNGALLSRSQVFVLKR---------------- 175

Query: 178 IRLNFYEIEDLKTIVQRGAKL--TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
                 +   L  I+ +        L +  +A   + + S G  R    L+  +      
Sbjct: 176 -----LDDAALDQIIAKAEDHIGRKLPLEADAYETLKLLSDGDGRYILSLIEALDHMG-- 228

Query: 236 AHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDA 295
                    ++  ALL     +      D            G       ISA     R +
Sbjct: 229 -----FESPLSSEALLAQLQKRRPNHDKDRE----------GH---YNLISALHKSVRGS 270

Query: 296 IEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
             D    ++ +       P    R L+ +A + +G   P
Sbjct: 271 DPDAALYWLARMLNGGDDPLFIARRLIRMASEDIGNADP 309


>gi|257452139|ref|ZP_05617438.1| recombination factor protein RarA [Fusobacterium sp. 3_1_5R]
 gi|257466067|ref|ZP_05630378.1| recombination factor protein RarA [Fusobacterium gonidiaformans
           ATCC 25563]
 gi|315917223|ref|ZP_07913463.1| ATPase [Fusobacterium gonidiaformans ATCC 25563]
 gi|317058684|ref|ZP_07923169.1| ATPase [Fusobacterium sp. 3_1_5R]
 gi|313684360|gb|EFS21195.1| ATPase [Fusobacterium sp. 3_1_5R]
 gi|313691098|gb|EFS27933.1| ATPase [Fusobacterium gonidiaformans ATCC 25563]
          Length = 410

 Score =  129 bits (325), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 66/342 (19%), Positives = 123/342 (35%), Gaps = 64/342 (18%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGP 62
            L   N          LRP++L+E  GQ +       L+  IE  +     L + +F GP
Sbjct: 2   NLFESNYEAIKPLSFQLRPQSLDEIFGQEKLLGKHGVLRKLIETGR-----LTNSIFFGP 56

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIH 115
           PG GK+TL ++++  +   F S +    A   D+  ++   +        + +LF+DEIH
Sbjct: 57  PGCGKSTLGEIISHTMDCAFESLNA-TTASLQDIKEVVLRAKRNVEYYQKKTILFLDEIH 115

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R + + ++ L    E+    L+    E P        LSR                    
Sbjct: 116 RFNKLQQDALLSYCENGTFILIGATTENPYYSLNNALLSRV------------------- 156

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
             +       E ++++ I++R     G++++      ++  ++G  R+A   L   ++  
Sbjct: 157 --MVFEFKSLEKKEIQQILKRAQTKIGISLSPFLEEVMSEMAQGDSRVALNYLELYQNL- 213

Query: 234 EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
                     EI    + R        D+ D+                   ISA +   R
Sbjct: 214 ---KDSLSEEEIYQVFMERKHSFHKTQDKYDM-------------------ISAMIKSMR 251

Query: 294 DAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +  D    ++         PR   R +M  A + +G+  P 
Sbjct: 252 GSDPDAAVYWLGCLLEGGEDPRYMARRIMIQACEDVGMANPE 293


>gi|325684423|gb|EGD26591.1| ATPase [Lactobacillus delbrueckii subsp. lactis DSM 20072]
          Length = 434

 Score =  129 bits (325), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 67/323 (20%), Positives = 119/323 (36%), Gaps = 35/323 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+++++  GQ       K+     +AR   L  ++  GPPG+GKT++A  +A 
Sbjct: 3   PLAYRMRPQSIDQVVGQQHLVGPKKIIRRMVEARQ--LSSMILYGPPGIGKTSIASAIAG 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLT--NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
                FR  +        +L+ +     +    VL +DEIHRL+ + ++ L P +E  Q+
Sbjct: 61  SSRYAFRQLNAAT-DGQKELSQVAAEGKMSGTVVLLLDEIHRLNKVKQDFLLPLLESGQV 119

Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            ++    E P         SR  +            PL +   +         E      
Sbjct: 120 IMIGATTENPYLAISPAIRSRCQIFEL--------KPLTEEEILTAVDRALTDE------ 165

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           +RG       +T EA   +A +  G  R     L      A ++  + +  E  DA    
Sbjct: 166 ERGLGKYHAKLTKEAGEFLAQKGNGDLRATLNSLE----LAVLSTKQELEAEGKDA---- 217

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY---MIQQGF 309
                +  D +       I      G    + +SA     R +  D    Y   +++ G 
Sbjct: 218 -FSFTVTLDDMADSLQMKIQNFDADGDGHYDLLSAFQKSIRGSDTDAGLHYLGRLLESGD 276

Query: 310 IQRTPRGRLLMPIAWQHLGIDIP 332
           +      R L  IA++ +G+  P
Sbjct: 277 LVSIC--RRLSVIAYEDIGLANP 297


>gi|328957181|ref|YP_004374567.1| recombination factor protein RarA [Carnobacterium sp. 17-4]
 gi|328673505|gb|AEB29551.1| recombination factor protein RarA [Carnobacterium sp. 17-4]
          Length = 428

 Score =  129 bits (325), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 70/324 (21%), Positives = 122/324 (37%), Gaps = 43/324 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP  ++   GQ       K+     +A+   L  ++  GPPG+GKT++A  +A 
Sbjct: 4   PLAYRMRPTHIDNIVGQQHLVGKGKIIRRMVEAK--MLSSMILYGPPGIGKTSIASAIAG 61

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
                FR  +     K  DL  ++   +     +L +DEIHRL    ++ L P +E+ ++
Sbjct: 62  TTKYAFRILNAASDTK-KDLQIVVEEAKMSGTVILLLDEIHRLDKPKQDFLLPHLENGRI 120

Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            L+    E P         SR  +    T          +     +     + E      
Sbjct: 121 ILIGATTENPYITINPAIRSRSQIFELKTLSN-------EDIQQAMWNAVNDSE------ 167

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK--TITREIADAAL 250
            +G     +A+TD+A    +  + G  R +   L                IT EIA+  +
Sbjct: 168 -KGFGKEKIAITDQALLHFSRATSGDLRSSLNGLELAIKSTAPDEQGMINITLEIAEECV 226

Query: 251 LRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            R A   DK G    D+  ++ + ++  G  V              A+  L    +I+ G
Sbjct: 227 QRKALTHDKDGDAHYDV--ISALQKSIRGSDV------------NAALHYLAR--LIEAG 270

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIP 332
            +      R LM IA++ +G+  P
Sbjct: 271 DLPIIS--RRLMVIAYEDIGLANP 292


>gi|258420199|ref|ZP_05683154.1| recombination protein MgsA [Staphylococcus aureus A9719]
 gi|257843910|gb|EEV68304.1| recombination protein MgsA [Staphylococcus aureus A9719]
          Length = 424

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 65/326 (19%), Positives = 124/326 (38%), Gaps = 43/326 (13%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +   S +RP+ ++E   Q        +       +   L  ++F GPPG+GKT++A+ ++
Sbjct: 4   EPLASRMRPKNIDEIISQQHLVGPKGIIRRMVDTK--KLTSMIFYGPPGIGKTSIAKAIS 61

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
                 FR  +  V     D+  ++   +   + +L +DEIHRL    ++ L P +E+ +
Sbjct: 62  GSTQYKFRQLNA-VTNTKKDMQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGK 120

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + L+      P         SR  +            PL D           E +     
Sbjct: 121 IVLIGATTSNPYHAINPAIRSRAQIFELY--------PLNDEDVRQALTRAIEYD----- 167

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK--TITREIADAA 249
            + G K     + ++A    + +S+G  R A   L      A+        +T + A   
Sbjct: 168 -ENGLKTYQPKIDEDAMTYFSTQSQGDVRNALNALELAVLSADNDKDGYRHVTLQDAKDC 226

Query: 250 LLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           L + A   DK G    D+  ++   ++  G  V              A+  L    +I+ 
Sbjct: 227 LQKGAFVSDKDGDMHYDV--MSAFQKSIRGSDV------------NAALHYLAR--LIEA 270

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
           G +      R L+ I+++ +G+  P+
Sbjct: 271 GDLPTIV--RRLLVISYEDIGLASPN 294


>gi|258542798|ref|YP_003188231.1| recombination factor protein RarA [Acetobacter pasteurianus IFO
           3283-01]
 gi|256633876|dbj|BAH99851.1| AAA ATPase [Acetobacter pasteurianus IFO 3283-01]
 gi|256636935|dbj|BAI02904.1| AAA ATPase [Acetobacter pasteurianus IFO 3283-03]
 gi|256639988|dbj|BAI05950.1| AAA ATPase [Acetobacter pasteurianus IFO 3283-07]
 gi|256643044|dbj|BAI08999.1| AAA ATPase [Acetobacter pasteurianus IFO 3283-22]
 gi|256646099|dbj|BAI12047.1| AAA ATPase [Acetobacter pasteurianus IFO 3283-26]
 gi|256649152|dbj|BAI15093.1| AAA ATPase [Acetobacter pasteurianus IFO 3283-32]
 gi|256652139|dbj|BAI18073.1| AAA ATPase [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655196|dbj|BAI21123.1| AAA ATPase [Acetobacter pasteurianus IFO 3283-12]
          Length = 453

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 64/327 (19%), Positives = 99/327 (30%), Gaps = 52/327 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP+ LE+  GQ              +    +L  ++  G PG+GKTT+A+++A+
Sbjct: 38  PLADRLRPQRLEDVVGQAYLLGPEGALTRMLER--GSLASLILWGGPGVGKTTIARLLAQ 95

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130
             G+ F   S  V +   DL     N           +LF+DEIHR +   ++   P +E
Sbjct: 96  AAGLKFVQLSA-VFSGVADLKKAFENARRQAEIGGGTLLFVDEIHRFNRAQQDGFLPVVE 154

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           D  + L+    E PS       LSR  ++            L  R               
Sbjct: 155 DGTVVLVGATTENPSFALNSALLSRCQVMVLNRLDDPACEALLVR--------------- 199

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
                              A E   R           LR + D             + + 
Sbjct: 200 -------------------AEEETGRPLPLTEDGRVTLRAMAD-----GDGRYLLNMVEQ 235

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L       +    L                     ISA     R +  D    +  +  
Sbjct: 236 LLSLKTEKPLDAQALSRLLAKRAILYDRDREEHYNLISALHKSMRGSDPDAALYWFARML 295

Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIPH 333
                PR  GR +   A + +G+  PH
Sbjct: 296 EGGEDPRYLGRRMTRFAAEDIGMADPH 322


>gi|168071185|ref|XP_001787086.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162659751|gb|EDQ48100.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 216

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 51/213 (23%), Positives = 92/213 (43%), Gaps = 26/213 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP++++E  GQ    +  K+   A +A  + +  ++F GPPG GKTTLA+V+AR
Sbjct: 19  PLAARMRPQSIQEVIGQSHILAPGKLLRRAIEA--DQVSSLIFYGPPGTGKTTLAKVIAR 76

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVL-------FIDEIHRLSIIVEEILYPAM 129
               +  S    V A   D+  ++   ++R V+       F+DEIHR +   ++ L P +
Sbjct: 77  ST-RSHFSELNAVTAGVADIRKVVEAAKERLVMDNQRTTLFVDEIHRFNKSQQDALLPYV 135

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E+  + L+    E P        LSR  + +  +        + +R              
Sbjct: 136 EEGTIILIGATTENPFFEVNPALLSRSQIFSLQSLTHEELGQVMER-------------- 181

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPR 220
             T    G     +++T EA+  +   + G  R
Sbjct: 182 ALTDEVNGLGELRVSLTPEASEHLIHYAEGDAR 214


>gi|296114100|ref|YP_003628038.1| recombination protein MgsA [Moraxella catarrhalis RH4]
 gi|295921794|gb|ADG62145.1| recombination protein MgsA [Moraxella catarrhalis RH4]
          Length = 412

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 76/325 (23%), Positives = 117/325 (36%), Gaps = 48/325 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP TL+   GQ    S           R   L  ++  G  G+GKTTLA ++A 
Sbjct: 3   PLAERMRPTTLDAVIGQTHLLSEGAPIFN--IVRQGFLPSLILHGSAGIGKTTLAMLLAD 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTN----LEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
            +G  FR  S  V +   +L  +L +      +  V+F+DEIHR +   ++ L  A+E  
Sbjct: 61  AVGRPFRPLSA-VSSGVKELREVLRSDDGLFHEPPVVFVDEIHRFNKAQQDALLQAVETG 119

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           ++ L+    E PS       LSR  +            PL D     + +     + L  
Sbjct: 120 EITLIGATTENPSFSVNNALLSRCQVYKL--------EPLSDDEIYALIVRAIRQDTL-- 169

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
                 K   + + D AA      S+G  R A  LL  V    E       +     A  
Sbjct: 170 -----LKTKDIQINDLAAL--IDLSQGDGRRALNLLELVAAAPEPIIIDNASVAAV-AGQ 221

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
             +  DK G    DL                   ISA +   R +  D    +M +    
Sbjct: 222 PLVRYDKSGDGHYDL-------------------ISAMIKSVRGSDADAAIYWMARILAA 262

Query: 311 QRTPR--GRLLMPIAWQHLGIDIPH 333
              P    R L+ +A + +G+  P+
Sbjct: 263 GEDPAFVARRLVILASEDIGLANPN 287


>gi|329946639|ref|ZP_08294051.1| ATPase, AAA family [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328526450|gb|EGF53463.1| ATPase, AAA family [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 468

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 87/351 (24%), Positives = 131/351 (37%), Gaps = 78/351 (22%)

Query: 21  LLRPRTLEEFTGQVEAC---SNLKVFIE----------------AAKARAEALDHVLFVG 61
            +RPRTL+E  GQ       S L+  +E                 A     +L  V+  G
Sbjct: 25  RMRPRTLDELEGQTHLLTPGSPLRRLVEPSRTTEQVDSGAPARPNAHRLGASLSSVVLWG 84

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIH 115
           PPG GKTTLA +VAR  G  F   S  V A   D+ A++T+   R       VLFIDE+H
Sbjct: 85  PPGTGKTTLAYLVARGSGRRFVELSA-VTAGVKDVRAVVTDARRRLSAGEETVLFIDEVH 143

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSV-----KINLSRFTLIAATTRVGLLTN 168
           R S   ++ L P++E+  + L+    E PS   V     +  L     + A     L+  
Sbjct: 144 RFSRSQQDALLPSVENRWVTLIAATTENPSFSVVSPLLSRSLLLTLHPLGADDIGRLVDR 203

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGT-----PRIAG 223
            L D  G+   +     E  + IV+        A+T   A    + ++GT     PRI  
Sbjct: 204 ALNDERGLAGAVRI-TEEAREQIVRMAGSDARKALTVLEAAAGTVLAQGTGASSPPRIEV 262

Query: 224 RLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIE 283
             + +  D A V                    D+ G    D+                  
Sbjct: 263 ADVEQAADVAAVR------------------YDRAGDQHYDV------------------ 286

Query: 284 TISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
            +SA +   R +  D    Y+ +       PR   R ++  A + +G+  P
Sbjct: 287 -VSAFIKSMRGSDPDATMHYLARMIAAGEDPRYIARRIVIHAAEDIGLADP 336


>gi|223983856|ref|ZP_03634020.1| hypothetical protein HOLDEFILI_01301 [Holdemania filiformis DSM
           12042]
 gi|223964180|gb|EEF68528.1| hypothetical protein HOLDEFILI_01301 [Holdemania filiformis DSM
           12042]
          Length = 420

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 76/330 (23%), Positives = 128/330 (38%), Gaps = 58/330 (17%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           +      +RP TL+E  GQ       +V     +     L  ++F GPPG GKTTLA V+
Sbjct: 2   KQPLAFRMRPETLDEVIGQQHLIGPGQVIRRCIEQ--GRLFSMIFYGPPGTGKTTLASVL 59

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           A EL + +R  +  V     +L  +    +  D  VL IDE+HRL+   +++L P +E+ 
Sbjct: 60  ANELHLPYRLFNA-VTGNKKELDTIFEEAKFYDGLVLIIDEVHRLNKDKQDLLLPHVENG 118

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           ++ +++G   S  ++ IN                   ++ R  +         + +   +
Sbjct: 119 RI-ILIGATTSNPTMAIN-----------------PAIRSRCHLFAIKPLETADIIAA-L 159

Query: 193 QRGAKLT-----GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            R A         + +  +AA  IA    G  R A  +L      A  +    I+ E+  
Sbjct: 160 NRAAASEKGLNGQVQLDPKAAELIASYCGGDIRYALNVLELC---AIASDEPVISPELVR 216

Query: 248 AALLR--LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY-- 303
             + R    IDK G    D   ++   +   G  V                 D    Y  
Sbjct: 217 QYVQRPVRGIDKDGDGHYDA--VSAFQKAIRGSDV-----------------DASLYYLA 257

Query: 304 -MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
            +IQ G +      R L+ IA++ +G+  P
Sbjct: 258 RLIQAGDMDSIE--RRLLVIAYEDIGLGNP 285


>gi|326571804|gb|EGE21810.1| recombination factor protein RarA [Moraxella catarrhalis BC7]
          Length = 412

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 73/325 (22%), Positives = 114/325 (35%), Gaps = 48/325 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP TL+   GQ    S           R   L  ++  G  G+GKTTLA ++A 
Sbjct: 3   PLAERMRPTTLDAVIGQTHLLSEGAPIFN--IVRQGFLPSLILHGSAGIGKTTLAMLLAD 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTN----LEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
            +G  FR  S  V +   +L  +L +      +  V+F+DEIHR +   ++ L  A+E  
Sbjct: 61  AVGRPFRPLSA-VSSGVKELREVLRSDDGLFHEPPVVFVDEIHRFNKAQQDALLQAVETG 119

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           ++ L+    E PS       LSR  +            PL D     + +     + L  
Sbjct: 120 EITLIGATTENPSFSVNNALLSRCQVYKL--------EPLSDDEIYALIVRAIRQDTL-- 169

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
                  L    +       +   S+G  R A  LL  V    E       +     A  
Sbjct: 170 -------LKTKDIQINNLAALIDLSQGDGRRALNLLELVAAAPEPIIIDNASVAAV-AGQ 221

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
             +  DK G    DL                   ISA +   R +  D    +M +    
Sbjct: 222 PLVRYDKSGDGHYDL-------------------ISAMIKSVRGSDADAAIYWMARILAA 262

Query: 311 QRTPR--GRLLMPIAWQHLGIDIPH 333
              P    R L+ +A + +G+  P+
Sbjct: 263 GEDPAFVARRLVILASEDIGLANPN 287


>gi|94986459|ref|YP_594392.1| recombination factor protein RarA [Lawsonia intracellularis
           PHE/MN1-00]
 gi|94730708|emb|CAJ54070.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [Lawsonia intracellularis PHE/MN1-00]
          Length = 410

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 73/321 (22%), Positives = 114/321 (35%), Gaps = 55/321 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP  L+ F GQ      L+  I A +     L  +LF GPPG GK+TLA ++A 
Sbjct: 5   PLSEKLRPNNLDTFIGQNHLLERLQYIISAPR-----LPSLLFFGPPGCGKSTLALLLAY 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           +   N    S P       +  L   L D D+L +DEIHR S   ++   P +E  +L +
Sbjct: 60  KKSTNILRISAPETG----IQQLRQKLTDIDILILDEIHRFSKAQQDFFLPLLESGKLTM 115

Query: 137 M--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           +    E PS    K  LSR  ++                             +LK +V++
Sbjct: 116 LATTTENPSFSVTKQLLSRLNVLQLRQLGYN---------------------ELKELVKK 154

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
           G     + + D+    +A  + G  R    L+  +    E        +      L R  
Sbjct: 155 GTLFLNILLPDDVINFLATTAHGDARTLFNLIEYISILPEEKRVLEYIKINLPEILER-- 212

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
            DK G       Y + + ++  G                 +  D    Y+         P
Sbjct: 213 HDKDGDSHY--EYASALIKSIRG-----------------SNPDAALYYLACLLEGGEDP 253

Query: 315 R--GRLLMPIAWQHLGIDIPH 333
           R   R L+  A + +G+  P 
Sbjct: 254 RFICRRLIISASEDIGLADPQ 274


>gi|29376501|ref|NP_815655.1| recombination factor protein RarA [Enterococcus faecalis V583]
 gi|29343965|gb|AAO81725.1| ATPase, AAA family [Enterococcus faecalis V583]
          Length = 425

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 64/326 (19%), Positives = 115/326 (35%), Gaps = 47/326 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RPR L+E  GQ       K+     +A+   L  ++  GPPG GKT++A  +A 
Sbjct: 4   PLAYRMRPRHLDEVVGQQHLVGPGKIIRRMVEAK--MLSSMILYGPPGTGKTSIASAIAG 61

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR  +     K    + A    +    +L +DEIHRL    ++ L P +E+ ++ 
Sbjct: 62  STNYAFRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPHLENGRI- 120

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ-- 193
           +M+G       + IN                   ++ R  I       E +  + I +  
Sbjct: 121 IMIGATTENPYITIN-----------------PAIRSRTQIFEVKPLTETDIQQAIQEAL 163

Query: 194 ----RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
               RG     + + ++A   +   + G  R A   L              I   +    
Sbjct: 164 TDSTRGLGDYPVHLEEKALQHLTRATNGDLRSALNGLELAVKSTPKNEQGEIKITLP--- 220

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY---MIQ 306
           ++   + +     +              G    + ISA     R +  D    Y   +++
Sbjct: 221 IIEECVQRKALTHV------------KDGDAHYDVISAFQKSIRGSDVDAALHYLGRLVE 268

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIP 332
            G +      R LM IA++ +G+  P
Sbjct: 269 AGDLPIIC--RRLMVIAYEDIGLGNP 292


>gi|326561726|gb|EGE12061.1| recombination factor protein RarA [Moraxella catarrhalis 7169]
 gi|326569052|gb|EGE19121.1| recombination factor protein RarA [Moraxella catarrhalis BC1]
          Length = 412

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 76/325 (23%), Positives = 117/325 (36%), Gaps = 48/325 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP TL+   GQ    S           R   L  ++  G  G+GKTTLA ++A 
Sbjct: 3   PLAERMRPTTLDAVIGQTHLLSEGAPIFN--IVRQGFLPSLILHGSAGIGKTTLAMLLAD 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTN----LEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
            +G  FR  S  V +   +L  +L +      +  V+F+DEIHR +   ++ L  A+E  
Sbjct: 61  AVGRPFRPLSA-VSSGVKELREVLRSDDGLFHEPPVVFVDEIHRFNKAQQDALLQAVETG 119

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           ++ L+    E PS       LSR  +            PL D     + +     + L  
Sbjct: 120 EITLIGATTENPSFSVNNALLSRCQVYKL--------EPLSDDEIYALIVRAIRQDTL-- 169

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
                 K   + + D AA      S+G  R A  LL  V    E       +     A  
Sbjct: 170 -----LKTKDIQINDLAAL--IDLSQGDGRRALNLLELVAAAPEPIIIDNASVAAV-AGQ 221

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
             +  DK G    DL                   ISA +   R +  D    +M +    
Sbjct: 222 PLVRYDKSGDGHYDL-------------------ISAMIKSVRGSDADAAIYWMARILAA 262

Query: 311 QRTPR--GRLLMPIAWQHLGIDIPH 333
              P    R L+ +A + +G+  P+
Sbjct: 263 GEDPAFVARRLVILASEDIGLANPN 287


>gi|255327169|ref|ZP_05368244.1| recombination factor protein RarA [Rothia mucilaginosa ATCC 25296]
 gi|255295787|gb|EET75129.1| recombination factor protein RarA [Rothia mucilaginosa ATCC 25296]
          Length = 503

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 77/338 (22%), Positives = 121/338 (35%), Gaps = 23/338 (6%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEA--LDHVLFVGPPGLG 66
           S   +        +RPRT++E  GQ    +        A   A       V+  GPPG G
Sbjct: 38  SARSASRAPLAVRMRPRTIDEVLGQEHLLTPGAPLRVLAGENAGPAGPSSVILYGPPGTG 97

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSI 119
           KTTLA V+AR  G  F   S  + A   D+ A++              VLF+DEIHR + 
Sbjct: 98  KTTLAHVIARAPGRKFVELSA-ITAGVKDVRAVMDQALLDRDMYGTTTVLFLDEIHRFTK 156

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             ++ L P +E+  + L+    E PS   +   LSR  L+   +        L DR    
Sbjct: 157 AQQDALLPGVENRWVILVAATTENPSFSIISPLLSRSLLLRVHSLEQSDIERLIDR---- 212

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
              +    +    I +            +A   +                     AE   
Sbjct: 213 ALADPRGFDGAAVIDEDARAHLAAVSGGDARRSLTSLEAAAAIAFSEAEAAGNAPAETGP 272

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
           A+T   E   AA +R+ +     + +D        R    G    + +SA +   R +  
Sbjct: 273 AETGAEETDPAAPVRITL-AHATEAVDR----AAIRYDRSGDQHYDVVSAFIKSMRGSDA 327

Query: 298 DLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           D    Y+ +       PR   R +M +A + +G+  P 
Sbjct: 328 DAAVHYLARMLEGGEDPRFVARRIMILASEDIGLADPQ 365


>gi|94498812|ref|ZP_01305358.1| ATPase [Sphingomonas sp. SKA58]
 gi|94421741|gb|EAT06796.1| ATPase [Sphingomonas sp. SKA58]
          Length = 439

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 71/329 (21%), Positives = 111/329 (33%), Gaps = 56/329 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRPRTL +  GQ               A    L  ++F GPPG GKTT+++++A 
Sbjct: 21  PLADRLRPRTLGDVVGQEHLTGPDGAIGRMVAA--GRLSSIIFWGPPGTGKTTISRLLAH 78

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130
            +G+ F   S  V +   DL  +    +D      + +LF+DEIHR +   ++   P +E
Sbjct: 79  AVGMRFEPISA-VFSGVADLKKVFAAAKDHARHGEKTLLFVDEIHRFNRAQQDSFLPFVE 137

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +  + L+    E PS       LSR  ++            L DR               
Sbjct: 138 NGTVTLVGATTENPSFELNAALLSRAQVLILRRLDAAALEQLLDR--------------- 182

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
                 G     L +   A   +   + G  R    LL +V     +   + +      A
Sbjct: 183 ----AEGLMERPLPLDPAAREALLASADGDGRF---LLNQVETLYAIDIPEPLDPAGLSA 235

Query: 249 ALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
            L R     DK      +L                   ISA     R +       Y+ +
Sbjct: 236 LLHRRVAVYDKDREGHYNL-------------------ISALHKSLRGSDPQAALYYLAR 276

Query: 307 QGFIQRTPRG--RLLMPIAWQHLGIDIPH 333
                  P    R L+  A + +G+  P 
Sbjct: 277 MLTAGEEPLYVLRRLVRFATEDIGLADPQ 305


>gi|256850909|ref|ZP_05556298.1| recombination factor protein RarA [Lactobacillus jensenii 27-2-CHN]
 gi|260661123|ref|ZP_05862037.1| recombination factor protein RarA [Lactobacillus jensenii
           115-3-CHN]
 gi|282934179|ref|ZP_06339457.1| replication-associated recombination protein A [Lactobacillus
           jensenii 208-1]
 gi|297205787|ref|ZP_06923182.1| AAA family ATPase [Lactobacillus jensenii JV-V16]
 gi|256615971|gb|EEU21159.1| recombination factor protein RarA [Lactobacillus jensenii 27-2-CHN]
 gi|260548060|gb|EEX24036.1| recombination factor protein RarA [Lactobacillus jensenii
           115-3-CHN]
 gi|281301793|gb|EFA94059.1| replication-associated recombination protein A [Lactobacillus
           jensenii 208-1]
 gi|297148913|gb|EFH29211.1| AAA family ATPase [Lactobacillus jensenii JV-V16]
          Length = 432

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 67/327 (20%), Positives = 108/327 (33%), Gaps = 45/327 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+ L E  GQ       K+     +A+   L  ++  GPPG+GKT++A  +A 
Sbjct: 3   PLAYRMRPQDLTEVVGQSHLVGPGKIIRRMVEAK--LLSSMILYGPPGIGKTSIASAIAG 60

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR  +     K      AL   +    +L +DEIHRL    ++ L P +E  Q+ 
Sbjct: 61  STKYAFRMLNAATDTKKDLQQVALEAKMSGTVILLLDEIHRLDKTKQDFLLPLLESGQIV 120

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           L+    E P         SR  +           +PL               E      +
Sbjct: 121 LIGATTENPYISISPAIRSRCQIFEL--------HPLSATDAQKAIHRALNDE------E 166

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR--DFAEVAHAKTITREIADAAL- 250
           RG     + +  +A   +  +  G  R     L       +AE    K     I    + 
Sbjct: 167 RGLGKYHVQLQKDAEQLLIEKGNGDLRATLNALELAVLSTYAEKGRNKDQQLIITQEIMA 226

Query: 251 -----LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
                     D  G    D      +   F     G +T +A                +I
Sbjct: 227 DSIQVKSQNFDANGDGHYD------LVSAFQKSIRGSDTDAALH----------YLARLI 270

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           + G +      R L+ IA++ +G+  P
Sbjct: 271 ESGDLISIC--RRLLVIAYEDIGLANP 295


>gi|46199825|ref|YP_005492.1| recombination factor protein RarA [Thermus thermophilus HB27]
 gi|46197452|gb|AAS81865.1| ATPase [Thermus thermophilus HB27]
          Length = 421

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 78/328 (23%), Positives = 121/328 (36%), Gaps = 59/328 (17%)

Query: 16  DADISLLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           +     LRPR+L+E  GQ         L+  +EA +     L  ++  GPPG GKTTLA+
Sbjct: 5   EPLAERLRPRSLDEVLGQPHLTGPKGLLRRMLEAGR-----LSSMVLFGPPGTGKTTLAR 59

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTN--LEDRDVLFIDEIHRLSIIVEEILYPAME 130
           ++A  +G  F   S  V A   ++   +     +   VLF+DE+HR +   ++ L P +E
Sbjct: 60  LLAEGVGRPFLRLSA-VEAGLKEVRQAVEEARAKGGLVLFLDEVHRFNKAQQDALLPHLE 118

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
              L L+    E P+   V    SR               PL++   + +     E    
Sbjct: 119 SGLLTLIGATAENPAFALVPALRSRLRFFPLR--------PLEEADLLALLRRALEDPR- 169

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
                    L G    +EA   +A  + G  R A   L     F  V        +    
Sbjct: 170 --------GLPGTPYEEEALRVLAQAAGGDARFALNTLELAASFGRV------DLKSVRE 215

Query: 249 AL--LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           AL   R  +D+ G    DL                   +SA     R +  D    Y+ +
Sbjct: 216 ALGAERFGMDREGDRFYDL-------------------VSALHKSLRGSHVDAALYYLAR 256

Query: 307 QGFIQRTPR--GRLLMPIAWQHLGIDIP 332
                  PR   R L+ +A + +G+  P
Sbjct: 257 LLQGGADPRYLARRLIRVAVEDVGLADP 284


>gi|55981853|ref|YP_145150.1| recombination factor protein RarA [Thermus thermophilus HB8]
 gi|55773266|dbj|BAD71707.1| probable ATPase [Thermus thermophilus HB8]
          Length = 421

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 78/328 (23%), Positives = 121/328 (36%), Gaps = 59/328 (17%)

Query: 16  DADISLLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           +     LRPR+L+E  GQ         L+  +EA +     L  ++  GPPG GKTTLA+
Sbjct: 5   EPLAERLRPRSLDEVLGQPHLTGPQGLLRRMLEAGR-----LSSMVLFGPPGTGKTTLAR 59

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTN--LEDRDVLFIDEIHRLSIIVEEILYPAME 130
           ++A  +G  F   S  V A   ++   +     +   VLF+DE+HR +   ++ L P +E
Sbjct: 60  LLAEGVGRPFLRLSA-VEAGLKEVRQAVEEARAKGGLVLFLDEVHRFNKAQQDALLPHLE 118

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
              L L+    E P+   V    SR               PL++   + +     E    
Sbjct: 119 SGLLTLIGATAENPAFALVPALRSRLRFFPLR--------PLEEADLLALLRRALEDPR- 169

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
                    L G    +EA   +A  + G  R A   L     F  V        +    
Sbjct: 170 --------GLPGTPYEEEALRVLAQAAGGDARFALNTLELAASFGRV------DLKSVRE 215

Query: 249 AL--LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           AL   R  +D+ G    DL                   +SA     R +  D    Y+ +
Sbjct: 216 ALGAERFGMDREGDRFYDL-------------------VSALHKSLRGSHVDAALYYLAR 256

Query: 307 QGFIQRTPR--GRLLMPIAWQHLGIDIP 332
                  PR   R L+ +A + +G+  P
Sbjct: 257 LLQGGADPRYLARRLIRVAVEDVGLADP 284


>gi|330955484|gb|EGH55744.1| recombination factor protein RarA [Pseudomonas syringae Cit 7]
          Length = 207

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 56/223 (25%), Positives = 92/223 (41%), Gaps = 28/223 (12%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L SR    +    + LR   L+E+ GQ    ++ K   EA +    AL  ++F GPPG+G
Sbjct: 3   LFSREPIAQ-PLAARLRATNLDEYVGQEHVLAHGKPLREALEQ--GALHSMIFWGPPGVG 59

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLT-------NLEDRDVLFIDEIHRLSI 119
           KTTLA+++A+    +F + S  V+A   ++   +            R +LF+DE+HR + 
Sbjct: 60  KTTLAKLLAKVSDAHFETVSA-VLAGVKEIRQAVEVARQQAGQYGKRTILFVDEVHRFNK 118

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             ++   P +ED  L  +    E PS       LSR  +    +        L +R    
Sbjct: 119 SQQDAFLPYVEDGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVNRALTE 178

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPR 220
                          +RG     L ++DE    +   + G  R
Sbjct: 179 ---------------ERGLGKRQLTLSDEGFAILMSAADGDGR 206


>gi|157151477|ref|YP_001451097.1| recombination factor protein RarA [Streptococcus gordonii str.
           Challis substr. CH1]
 gi|157076271|gb|ABV10954.1| ATPase, AAA family [Streptococcus gordonii str. Challis substr.
           CH1]
          Length = 422

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 65/326 (19%), Positives = 119/326 (36%), Gaps = 42/326 (12%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            +     +RP  +++  GQ       K+     +A    L  ++  GPPG+GKT++A  +
Sbjct: 2   PENLALRMRPTGIDQIIGQQHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           A      FR+ +  V +K      A         VL +DEIHRL    ++ L P +E   
Sbjct: 60  AGTTKYAFRTFNATVDSKKRLQEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGL 119

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + ++    E P         SR  +            PL +             +     
Sbjct: 120 VIMIGATTENPFFSVTPAIRSRVQIFEL--------EPLSNDDIRTAIQLALTDK----- 166

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA--EVAHAKTITREIADAA 249
            +RG     + +  EA   IA+ + G  R A   L         +    + IT ++ + +
Sbjct: 167 -ERGFD-FPVELDKEALDFIAISTNGDLRSAYNSLDLAVLSTPEDDKGIRHITLDVMENS 224

Query: 250 LLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           L +    +DK G    D+  L+ + ++  G  V              ++       +++ 
Sbjct: 225 LQKSYITMDKDGDGHYDV--LSALQKSIRGSDV------------NASLHYAAR--LVEA 268

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
           G +      R L  IA++ +G+  P 
Sbjct: 269 GDLP--SLARRLTVIAYEDIGLANPD 292


>gi|83593992|ref|YP_427744.1| recombination factor protein RarA [Rhodospirillum rubrum ATCC
           11170]
 gi|83576906|gb|ABC23457.1| Recombination protein MgsA [Rhodospirillum rubrum ATCC 11170]
          Length = 439

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 74/334 (22%), Positives = 106/334 (31%), Gaps = 54/334 (16%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           + +        LRPR L E  GQ                 A  L  V+  GPPG GKTT+
Sbjct: 7   DEAAPRPLADRLRPRQLAEVVGQDHLVGPDGPLGRM--TAAHRLASVVLWGPPGCGKTTI 64

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEI 124
           A+++A    ++F   S  V A   DL  + T   +R       +LFIDEIHR +   ++ 
Sbjct: 65  ARLLADSTDLHFEPLSA-VFAGVADLRKIFTAARERRTVGRGTLLFIDEIHRFNRAQQDG 123

Query: 125 LYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             P +ED  + L+    E PS       LSR  ++            L  R       + 
Sbjct: 124 FLPYVEDGTVVLVGATTENPSFELNAALLSRCQVLVLRRLDDAALETLIARAEAECGRSL 183

Query: 183 -YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
               E  +T+  R             A E+          A  L R V+  A        
Sbjct: 184 PLSAEGRETL--RALADGDGRYLLNLAEELIALPAEPLLDAAGLARVVQRRAP------- 234

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
                         DK      +L                   ISA     R +  D   
Sbjct: 235 ------------QYDKDREGHYNL-------------------ISALHKALRGSDTDAAL 263

Query: 302 PYMIQQGFIQRTPRG--RLLMPIAWQHLGIDIPH 333
            +M +       P    R L   A + +G+  P 
Sbjct: 264 YWMGRMLAGGEDPLYLLRRLTRFAVEDIGLADPD 297


>gi|325271660|ref|ZP_08138160.1| recombination factor protein RarA [Pseudomonas sp. TJI-51]
 gi|324103212|gb|EGC00559.1| recombination factor protein RarA [Pseudomonas sp. TJI-51]
          Length = 279

 Score =  129 bits (324), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 72/301 (23%), Positives = 105/301 (34%), Gaps = 49/301 (16%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
             LLRP+ L+EF GQ       K    A +A  + L   +  GPPG+GKTTL ++ A   
Sbjct: 2   AELLRPKALDEFVGQRHLLGPGKPLRLAFEA--DNLHSFILWGPPGVGKTTLGRLAASAT 59

Query: 79  GVNFRSTSGPVIAKAGDLA-------ALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
              F + S  V+A   D+        A L N     VLF+DEIHR +   ++ L P +E 
Sbjct: 60  DSRFIAISA-VLAGVKDIRQAIDEAQAELDNHGRSTVLFVDEIHRFNKAQQDALLPHVES 118

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             L L+    E P        LSR  +       G   N              YE     
Sbjct: 119 GLLTLVGGTTEHPGLAVNSALLSRAQVYTLEPLSGDELN------------QPYERALPH 166

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
                   L G+ +  +A   +   + G  R    LL +V + A  A    +  E A  +
Sbjct: 167 --------LQGVTLDADALDLLKGFADGDGRRFLNLLEQVTNAASGAGKTVVDGEFARLS 218

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
                                + R   GG      +SA     R +  D    ++ +   
Sbjct: 219 TS-----------------PSLRRFDKGGDEFYWQLSAFHKSLRGSDPDAALYWLARILD 261

Query: 310 I 310
            
Sbjct: 262 G 262


>gi|149244336|ref|XP_001526711.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146449105|gb|EDK43361.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 839

 Score =  129 bits (324), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 79/366 (21%), Positives = 133/366 (36%), Gaps = 70/366 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACS---NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
                +RP+TL++F GQ +       L+  I+A     + +   L  GPPG GKTT+A++
Sbjct: 182 PLAHRVRPKTLDDFIGQEKLVGENAPLRNLIQA-----DLIPSFLLWGPPGCGKTTIARI 236

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILY 126
           +A+     +   SG   + A  L                R +LF+DEIHR +  V+++L 
Sbjct: 237 IAKSTDYRYVELSGA-DSNAKSLKDAFAQADNLKKLTGQRTILFLDEIHRYNKAVQDLLL 295

Query: 127 PAMEDFQLDLM--VGEGPSARSVKINLSR---FTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           P +E     ++    E PS       LSR   F +   TT   +            +   
Sbjct: 296 PVIERGTCTVIGATTENPSFNLNNALLSRLHTFVMEPLTTTAVVR----------ILHRA 345

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT- 240
            Y+I  L+  +    +L  + + + A   IA    G  R+A  +L  V  +   A  KT 
Sbjct: 346 LYDINQLRKNL---FQLHYMTLENGAFTYIAELCMGDSRVALNILETVNAYLSSAKFKTE 402

Query: 241 -------ITREIADAALLRLAIDKM-------------------GFDQLDLRYLTMIARN 274
                   T+   + A      D+                    G  ++    L  I + 
Sbjct: 403 LQTKVAQETKPQEEQARDEKVEDRHHGREGRGNHEEEGLTTPKQGVIKVSEYLLRQILQT 462

Query: 275 FG-------GGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRG--RLLMPIAWQ 325
                     G    + ISA     R +  D    Y+++       P    R ++ IA +
Sbjct: 463 RNFHQLYDRNGDGHYDVISAFHKSVRGSNADAAIFYLVKMLSGGEDPLFILRRMIVIASE 522

Query: 326 HLGIDI 331
            +G+  
Sbjct: 523 DIGLRD 528


>gi|326573491|gb|EGE23457.1| recombination factor protein RarA [Moraxella catarrhalis O35E]
          Length = 412

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 74/325 (22%), Positives = 116/325 (35%), Gaps = 48/325 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP TL+   GQ    S           R   L  ++  G  G+GKTTLA ++A 
Sbjct: 3   PLAERMRPTTLDAVIGQTHLLSEGAPIFN--IVRQGFLPSLILHGSAGIGKTTLAMLLAD 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTN----LEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
            +G  FR  S  V +   +L  +L +      +  V+F+DEIHR +   ++ L  A+E  
Sbjct: 61  AVGRPFRPLSA-VSSGVKELREVLRSDDGLFHEPPVVFVDEIHRFNKAQQDALLQAVETG 119

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           ++ L+    E PS       LSR  +            PL D     + +     + L  
Sbjct: 120 EITLIGATTENPSFSVNNALLSRCQVYKL--------EPLSDDEIYALIVRAIRQDTL-- 169

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
                  L    +       +   S+G  R A  LL  V    E       +  +A A  
Sbjct: 170 -------LKTKDIQINNLAALIDLSQGDGRRALNLLELVAAAPEPIIIDNASV-VAVAGQ 221

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
             +  DK G    DL                   ISA +   R +  D    +M +    
Sbjct: 222 PLVRYDKSGDGHYDL-------------------ISAMIKSVRGSDADAAIYWMARILAA 262

Query: 311 QRTPR--GRLLMPIAWQHLGIDIPH 333
              P    R L+ +A + +G+  P+
Sbjct: 263 GEDPAFVARRLVILASEDIGLANPN 287


>gi|323436175|ref|ZP_01051125.2| ATPase family associated with various cellular activities (AAA)
           [Dokdonia donghaensis MED134]
 gi|321496490|gb|EAQ37959.2| ATPase family associated with various cellular activities (AAA)
           [Dokdonia donghaensis MED134]
          Length = 426

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 64/334 (19%), Positives = 108/334 (32%), Gaps = 62/334 (18%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP+ LE++  Q           +A KA    +  ++  GPPG+GKTTLA ++A 
Sbjct: 5   PLAERLRPKKLEDYLSQHHLVGENGSLQQALKA--GIIPSLILWGPPGIGKTTLATIIAE 62

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED--------RDVLFIDEIHRLSIIVEEILYPA 128
           E    F + S  + +   D+  ++   +           +LFIDEIHR S   ++ L  A
Sbjct: 63  ESKRPFYTLSA-INSGVKDIREVIDKAKQSGGLFTQKNPILFIDEIHRFSKSQQDSLLGA 121

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ------DRFGIPIRL 180
           +E   + L+    E PS   +   LSR  +             L       D       +
Sbjct: 122 VERGWVTLVGATTENPSFEVIPALLSRCQVYILKPFEKKDLILLLNRAINTDEILKKKNI 181

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
              E E L  +    A+            E       T  +    +++            
Sbjct: 182 TLLETEALLRLSGGDARKLLNIFELIVTTENDKDVVVTNDMVLSKVQQ------------ 229

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
                       +  DK G    D+                   ISA +   R +  +  
Sbjct: 230 ----------NIVRYDKTGEQHYDI-------------------ISAFIKSIRGSDPNAA 260

Query: 301 EPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
             ++ +        +   R L+  A + +G   P
Sbjct: 261 VYWLARMIEGGEDVKFIARRLIIAAAEDIGNANP 294


>gi|225019293|ref|ZP_03708485.1| hypothetical protein CLOSTMETH_03246 [Clostridium methylpentosum
           DSM 5476]
 gi|224947924|gb|EEG29133.1| hypothetical protein CLOSTMETH_03246 [Clostridium methylpentosum
           DSM 5476]
          Length = 453

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 64/346 (18%), Positives = 127/346 (36%), Gaps = 52/346 (15%)

Query: 4   REGLLSRNVSQEDADISLL------RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           ++ L++   +  +  +  +      RP+T+++  GQ       +       +    L ++
Sbjct: 14  KQRLIASRFTNREKGVISMPLADRARPKTIDDVVGQKHLIGPGRPLRNIILSGE--LPNM 71

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-----EDRDVLFID 112
           +F GP G GKTT+A+++A   G      +G   A   D+  ++  L     ++  VL++D
Sbjct: 72  IFYGPSGTGKTTVARMIAENAGKRLHKLNG-TNASLADIKQVVGELDTIMGQNGIVLYLD 130

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           EI  L+   ++ L   +E  ++ L+    E P        LSR T+    +         
Sbjct: 131 EIQYLNKKQQQSLLEYIESGRITLIASTTENPYFYIYNAILSRATVFEFKSVPPQEAEAA 190

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
            +R    +                  +   L + +     IA    G  R A   +    
Sbjct: 191 VERGFRLVAEE---------------QKLELTLEEGVTAHIARGCGGDVRKALNTVELCV 235

Query: 231 DFAEVAHAKTITREIADAALLR---LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISA 287
             AE+   K          L +   +  D+ G +  D   L+ + ++  G          
Sbjct: 236 LAAELRDGKKTVSLELAKELTQKSAMRYDRAGDEHYD--LLSALQKSIRG---------- 283

Query: 288 GLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
             S+   A+  L    ++  G +  +P  R L+ IA + +G+  P 
Sbjct: 284 --SDENAALHYLAR--LLTAGDL-LSP-CRRLLVIAAEDIGLAYPQ 323


>gi|326772947|ref|ZP_08232231.1| ATPase, AAA family [Actinomyces viscosus C505]
 gi|326637579|gb|EGE38481.1| ATPase, AAA family [Actinomyces viscosus C505]
          Length = 477

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 69/333 (20%), Positives = 120/333 (36%), Gaps = 63/333 (18%)

Query: 17  ADISLLRPRTLEEFTGQVEACS---NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
                LRPR L++  GQ +  +    L   + + +     L  ++  GPPG GKTT+A++
Sbjct: 31  PLADRLRPRALDDVVGQDQLLADDAPLGRMVASGR-----LSSIILWGPPGCGKTTIARL 85

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYP 127
           +A   G+ F   S    +   DL  + T    R       +LF+DEIHR +   ++   P
Sbjct: 86  LADRTGLVFEQVSA-TFSGVADLRKVFTAAARRREIGQGTLLFVDEIHRFNRAQQDSFLP 144

Query: 128 AMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
            +ED  + L+    E PS       LSR  ++                          + 
Sbjct: 145 YVEDGTVVLVGATTENPSFELNGALLSRCQVMVLRR---------------------LDE 183

Query: 186 EDLKTIVQRGAKL--TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
             L  ++ R   L    LA+T++A   +   + G  R    ++ +V    +    + +  
Sbjct: 184 AALTELLARAESLTGRSLALTEDARTALLSMADGDGRYLLGMVEQVLAAQDAGGPEPLDV 243

Query: 244 EIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           E     +   A   DK   +  +L                   ISA     R +  D   
Sbjct: 244 EGLRGVIASRAPLYDKSHEEHYNL-------------------ISALHKSMRGSDPDAAL 284

Query: 302 PYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
            ++ +       P    R L+  A + +G+  P
Sbjct: 285 YWLARMLGGGEDPLYVARRLVRFASEDVGMADP 317


>gi|300172649|ref|YP_003771814.1| chromosome segregation helicase [Leuconostoc gasicomitatum LMG
           18811]
 gi|299887027|emb|CBL90995.1| Chromosome segregation helicase (Putative) [Leuconostoc
           gasicomitatum LMG 18811]
          Length = 428

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 69/324 (21%), Positives = 121/324 (37%), Gaps = 42/324 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP  +EE  GQ     + K+      A+   L  ++  GPPG GKT++A  +A 
Sbjct: 4   PLAYRMRPTQIEEIVGQPHLVGSGKIIRRMVDAK--RLSSMILYGPPGTGKTSIASAIAG 61

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR  +    ++    + A    +    VL +DEIHRL+ I ++ L P +E   + 
Sbjct: 62  SSKYAFRMLNAATDSQKDLQIVAEEAKMSGTVVLLLDEIHRLNKIKQDFLLPHLESGAII 121

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           L+    E P         SR       T++  +    ++   I ++    + E       
Sbjct: 122 LIGATTENPYINVTPAIRSR-------TQIFQVMPLTENDIKIAVKRALEDKE------- 167

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK---TITREIADAAL 250
           +G     + + D A  +++  + G  R A   L                 IT  I +  +
Sbjct: 168 KGLGNYNVMLDDNAMVQLSRATNGDLRSALNGLELAVLSTPPNKKDNIINITLPIIEETV 227

Query: 251 LRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            R A+  DK G    D+  ++ + ++  G  V      A L      +E    P +    
Sbjct: 228 QRKAMSADKDGDAHYDV--ISALQKSIRGSDVD-----AALHYAARIVESGDLPILT--- 277

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIP 332
                   R L  IA++ +G+  P
Sbjct: 278 --------RRLTVIAYEDIGLANP 293


>gi|313123418|ref|YP_004033677.1| recombination factor protein rara [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312279981|gb|ADQ60700.1| Recombination factor protein RarA [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 434

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 67/323 (20%), Positives = 121/323 (37%), Gaps = 35/323 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+++++  GQ       K+     +AR   L  ++  GPPG+GKT++A  +A 
Sbjct: 3   PLAYRMRPQSIDQVVGQQHLVGPKKIIRRMVEARQ--LSSMILYGPPGIGKTSIASAIAG 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTN--LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
                FR  +        +L+ +     +    VL +DEIHRL+ + ++ L P +E  Q+
Sbjct: 61  SSKYAFRQLNAAT-DGQKELSQVAAEGRMSGTVVLLLDEIHRLNKVKQDFLLPLLESGQV 119

Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            ++    E P         SR  +            PL +   +        ++   T  
Sbjct: 120 IMIGATTENPYLAISPAIRSRCQIFEL--------KPLTEEEILTA------VDRALTDK 165

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           +RG       +T EA   +A +  G  R     L      A ++  + +  E  DA    
Sbjct: 166 ERGLGKYHAKLTKEAGEFLAQKGNGDLRATLNSLE----LAVLSTKQELEAEGKDA---- 217

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY---MIQQGF 309
                +  D +       I      G    + +SA     R +  D    Y   +++ G 
Sbjct: 218 -FSFTVTLDDMADSLQMKIQNFDADGDGHYDLLSAFQKSIRGSDTDAGLHYLGRLLESGD 276

Query: 310 IQRTPRGRLLMPIAWQHLGIDIP 332
           +      R L  IA++ +G+  P
Sbjct: 277 LVSIC--RRLSVIAYEDIGLANP 297


>gi|326560683|gb|EGE11051.1| recombination factor protein RarA [Moraxella catarrhalis 46P47B1]
          Length = 412

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 74/325 (22%), Positives = 116/325 (35%), Gaps = 48/325 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP TL+   GQ    S           R   L  ++  G  G+GKTTLA ++A 
Sbjct: 3   PLAERMRPTTLDAVIGQTHLLSEGAPIFN--IVRQGFLPSLILHGSAGIGKTTLAMLLAD 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTN----LEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
            +G  FR  S  V +   +L  +L +      +  V+F+DEIHR +   ++ L  A+E  
Sbjct: 61  AVGRPFRPLSA-VSSGVKELREVLRSDDGLFHEPPVVFVDEIHRFNKAQQDALLQAVETG 119

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           ++ L+    E PS       LSR  +            PL D     + +     + L  
Sbjct: 120 EITLIGATTENPSFSVNNALLSRCQVYKL--------EPLSDDEIYALIVRAIRQDTL-- 169

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
                  L    +       +   S+G  R A  LL  V    E       +  +A A  
Sbjct: 170 -------LKTKDIQINNLAALIDLSQGDGRRALNLLELVAAAPEPIIIDNASV-VAVAGQ 221

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
             +  DK G    DL                   ISA +   R +  D    +M +    
Sbjct: 222 PLVRYDKSGDGHYDL-------------------ISAMIKSVRGSDADAAIYWMARILAA 262

Query: 311 QRTPR--GRLLMPIAWQHLGIDIPH 333
              P    R L+ +A + +G+  P+
Sbjct: 263 GEDPAFVARRLVILASEDIGLANPN 287


>gi|296535676|ref|ZP_06897851.1| replication-associated recombination protein A [Roseomonas
           cervicalis ATCC 49957]
 gi|296264000|gb|EFH10450.1| replication-associated recombination protein A [Roseomonas
           cervicalis ATCC 49957]
          Length = 463

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 71/325 (21%), Positives = 107/325 (32%), Gaps = 49/325 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRPR L E  GQ              +    AL  ++  GPPG+GKTT+A+++A 
Sbjct: 33  PLADRLRPRALPEVVGQEHLLGPEGAITRMLER--GALASLILWGPPGVGKTTIARLLAE 90

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
             G+ F + S        + KA D A          +LF+DEIHR +   ++   P +ED
Sbjct: 91  AAGLRFAALSAVFSGVADLKKAFDEARARRRAGQGTLLFVDEIHRFNRAQQDGFLPVVED 150

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             + L+    E PS       LSR  ++            L  R            E  +
Sbjct: 151 GTVTLVGATTENPSFALNGAILSRCQVMVLRRLDDAALERLLARAEAEAGRALPVDEAAR 210

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            +++                      R    +A +LL      A +  A         AA
Sbjct: 211 GVLR---------------AMADGDGRYLLNMAEQLLALPEGSAALDPAGLSALLAKRAA 255

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           L     DK   +  +L                   ISA     R +  D    +  +   
Sbjct: 256 L----YDKDREEHYNL-------------------ISALHKSLRGSDPDAALYWFSRMLE 292

Query: 310 IQRTPR--GRLLMPIAWQHLGIDIP 332
               PR   R L   A + +G+  P
Sbjct: 293 GGEDPRYIARRLTRFAAEDIGLADP 317


>gi|255711710|ref|XP_002552138.1| KLTH0B08052p [Lachancea thermotolerans]
 gi|238933516|emb|CAR21700.1| KLTH0B08052p [Lachancea thermotolerans]
          Length = 536

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 68/337 (20%), Positives = 124/337 (36%), Gaps = 54/337 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACS-NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
                LRP+ L E+ GQ    S    V  +    +   +  ++  GPPG+GKT+LA+++ 
Sbjct: 93  PLSEKLRPKELAEYVGQQHIISSEHGVLYK--FVQQGIIPSMILWGPPGVGKTSLARLLT 150

Query: 76  RELGVNFRSTSGPVI-------AKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIV 121
           + +  +  +     +       A A +L  +  N            V+FIDEIHR +   
Sbjct: 151 KAVNQSHANGVTYTLIQTSATKATAQELRKIFENSRREFSLTKRITVVFIDEIHRFNKGQ 210

Query: 122 EEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +++L P +E   + L+    E PS +     +SR        ++ +LT    D   + + 
Sbjct: 211 QDLLLPHVEAGDIVLIGATTENPSFQLNNALMSRC-------QIFVLTKLSTDEMCLVLS 263

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR-----DFAE 234
                +   + ++ +      L +       +   S G  R A  LL  +      D  E
Sbjct: 264 RGIAMLNKCRHLIWKV--NHPLKLDRSVLEFVVDISMGDTRRALNLLEMIEVSTRDDAKE 321

Query: 235 VAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRD 294
           +           ++  LR   D+ G +  D                   TISA     R 
Sbjct: 322 LKEEDIREIINGNSTELRTYYDRQGENHYD-------------------TISAFHKSVRG 362

Query: 295 AIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGI 329
           + E+    Y+ +       P    R ++ IA + +G+
Sbjct: 363 SDENAALYYLARMLQGGEDPLYIARRMIRIASEDIGV 399


>gi|326563109|gb|EGE13382.1| recombination factor protein RarA [Moraxella catarrhalis 12P80B1]
          Length = 412

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 74/325 (22%), Positives = 116/325 (35%), Gaps = 48/325 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP TL+   GQ    S           R   L  ++  G  G+GKTTLA ++A 
Sbjct: 3   PLAERMRPTTLDAVIGQTHLLSEGAPIFN--IVRQGFLPSLILHGSAGIGKTTLAMLLAD 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTN----LEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
            +G  FR  S  V +   +L  +L +      +  V+F+DEIHR +   ++ L  A+E  
Sbjct: 61  AVGRPFRPLSA-VSSGVKELREVLRSDDGLFHEPPVVFVDEIHRFNKAQQDALLQAVETG 119

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           ++ L+    E PS       LSR  +            PL D     + +     + L  
Sbjct: 120 EITLIGATTENPSFSVNNALLSRCQVYKL--------EPLSDDEIYALIVRAIRQDTL-- 169

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
                  L    +       +   S+G  R A  LL  V    E       +  +A A  
Sbjct: 170 -------LKTKDIQINNLAALIDLSQGDGRRALNLLELVAAAPEPIIIDNASV-VAVAGQ 221

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
             +  DK G    DL                   ISA +   R +  D    +M +    
Sbjct: 222 PLVRYDKSGDGHYDL-------------------ISAMIKSVRGSDADAAIYWMARILAA 262

Query: 311 QRTPR--GRLLMPIAWQHLGIDIPH 333
              P    R L+ +A + +G+  P+
Sbjct: 263 GEDPAFVARRLVILASEDIGLANPN 287


>gi|327459193|gb|EGF05541.1| AAA family ATPase [Streptococcus sanguinis SK1057]
          Length = 422

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 66/326 (20%), Positives = 119/326 (36%), Gaps = 42/326 (12%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            +     LRP  +++  GQ       K+     +A    L  ++  GPPG+GKT++A  +
Sbjct: 2   PENLALRLRPTDIDQIIGQQHLVGPGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           A      FR+ +  V +K      A         VL +DEIHRL    ++ L P +E   
Sbjct: 60  AGTTKYAFRTFNATVDSKKRLQEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGL 119

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + ++    E P         SR  +            PL +             +     
Sbjct: 120 VIMIGATTENPFFSVTPAIRSRVQIFEL--------EPLSNDDIRTAIQLALTDK----- 166

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA--EVAHAKTITREIADAA 249
            +RG     + +  EA   IA+ + G  R A   L         +    + IT ++ + +
Sbjct: 167 -ERGFD-FPVELDKEALDFIAISTNGDLRSAYNSLDLAVLSTPEDDKGIRHITLDVMENS 224

Query: 250 LLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           L +    +DK G    D+  L+ + ++  G  V              ++       +++ 
Sbjct: 225 LQKSYITMDKDGDGHYDV--LSALQKSIRGSDV------------NASLHYAAR--LVEA 268

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
           G +      R L  IA++ +G+  P 
Sbjct: 269 GDLP--SLARRLTVIAYEDIGLANPD 292


>gi|299535693|ref|ZP_07049014.1| hypothetical protein BFZC1_06708 [Lysinibacillus fusiformis ZC1]
 gi|298728893|gb|EFI69447.1| hypothetical protein BFZC1_06708 [Lysinibacillus fusiformis ZC1]
          Length = 428

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 65/335 (19%), Positives = 123/335 (36%), Gaps = 59/335 (17%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            +     +RP TL+E  G  +         +  +   E +  +L  G PG+GKT++A  +
Sbjct: 3   NEPLAFRMRPLTLDEIVGHQDFIGPNTALYKMIQ--NEHVPSMLLYGEPGIGKTSIANAI 60

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           A    + F + +    A   D+  ++       + +LF+DEIHR + + ++ L P +E+ 
Sbjct: 61  AGSSKLPFFALNA-TRAGKKDVEDIVQEARISGKVILFLDEIHRFNKLQQDTLLPHVENG 119

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
            + L+    E P                       +   ++ R G   +L     E+L  
Sbjct: 120 SIVLIGATTENPYH--------------------DVNPAIRSRCGEIYQLKRLTKENLIE 159

Query: 191 IVQ-------RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           +V+       RG      A+T     +IA  + G  R A  LL                 
Sbjct: 160 LVEKALADERRGLGKYHFALTPSQIEQIAAAANGDARKALTLL----------------- 202

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFG--GGPVGIETISAGLSEPRDAIEDLIE 301
           E    A   +    +  D + + +L      +G   G      +SA     R +  +   
Sbjct: 203 ESIYYASDEVDGQSVAADHV-IEHLISRIGVYGDKKGSHFYNLLSALQKSVRGSDTNAAL 261

Query: 302 PY---MIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            Y   +++ G +      R L+ +A++ +G+  P 
Sbjct: 262 YYLAHLLETGDLVAVS--RRLLVMAYEDIGLANPE 294


>gi|296271689|ref|YP_003654320.1| AAA ATPase central domain-containing protein [Arcobacter
           nitrofigilis DSM 7299]
 gi|296095864|gb|ADG91814.1| AAA ATPase central domain protein [Arcobacter nitrofigilis DSM
           7299]
          Length = 393

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 76/330 (23%), Positives = 130/330 (39%), Gaps = 71/330 (21%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           S+LRP +L++F GQ    S  KV  +        + H+ F G PG GKTTLA+++A+ + 
Sbjct: 6   SILRPNSLQDFVGQNHIISKNKVLYKLIIKGE--IPHLFFYGKPGTGKTTLAKIIAKTIN 63

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
            ++   +   + K  DL  + +  ++   + ++FIDE+HRLS   +E+L P ME++Q  +
Sbjct: 64  TDYFYFNATSL-KIEDLRKVFSKYDNSLIKPIVFIDEVHRLSKNQQEVLLPIMENYQ-AI 121

Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA 196
           ++G              FT          LTN ++ R         +  EDL +I++   
Sbjct: 122 IIGASTEN-------PFFT----------LTNAIRSRS-FLFEFLPHSREDLTSILEVAQ 163

Query: 197 KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAID 256
              G  ++DE    +   S G  R    LL              +   ++   L  L  +
Sbjct: 164 LKLGTKLSDETKEYLINSSSGDARAMLNLLEFAF---------KVDTNVSCETLKELRQN 214

Query: 257 KMGF------DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ--- 307
            +G          DL                    SA +   R +  D    Y+ +    
Sbjct: 215 VIGDGVSSSNTHYDLA-------------------SAMIKSVRGSDIDAALYYLSRLIEG 255

Query: 308 ----GFIQRTPRGRLLMPIAWQHLGIDIPH 333
                FI      R L+ +A + +G   P+
Sbjct: 256 GESVEFIT-----RRLVILASEDIGNANPN 280


>gi|169829332|ref|YP_001699490.1| hypothetical protein Bsph_3886 [Lysinibacillus sphaericus C3-41]
 gi|168993820|gb|ACA41360.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
          Length = 420

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 63/326 (19%), Positives = 119/326 (36%), Gaps = 55/326 (16%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP TL+E  G  +         +  +   E +  +L  G PG+GKT++A  +A    + 
Sbjct: 1   MRPLTLDEIVGHQDFIGPNTALYKMIQ--NEHVPSMLLYGEPGIGKTSIANAIAGSSQLP 58

Query: 82  FRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137
           F + +    A   D+  ++       + +LF+DEIHR + + ++ L P +E+  + L+  
Sbjct: 59  FFALNA-TRAGKKDVEDIVQEARISGKVLLFLDEIHRFNKLQQDTLLPHVENGSIVLIGA 117

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ---- 193
             E P                       +   ++ R G   +L     E+L  +V+    
Sbjct: 118 TTENPYH--------------------DVNPAIRSRCGEIYQLKRLTKENLMELVEKALA 157

Query: 194 ---RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
              RG       +TD     IA  + G  R A  LL  +   ++     TI  +      
Sbjct: 158 DEKRGLGKYHFILTDSQIERIAEAANGDARKALTLLESIYYASDEVEGPTIAADHI---- 213

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY---MIQQ 307
                       +D     +       G      +SA     R +  +    Y   +++ 
Sbjct: 214 ------------IDHLISRIGVYGDKKGSHFYNLLSALQKSVRGSDTNAALYYLAHLLET 261

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
           G +      R L+ +A++ +G+  P 
Sbjct: 262 GDLVAVS--RRLLVMAYEDIGLANPE 285


>gi|85373214|ref|YP_457276.1| recombination factor protein RarA [Erythrobacter litoralis
           HTCC2594]
 gi|84786297|gb|ABC62479.1| ATPase [Erythrobacter litoralis HTCC2594]
          Length = 440

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 71/336 (21%), Positives = 110/336 (32%), Gaps = 58/336 (17%)

Query: 11  NVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           +  +EDA ++  LRPR L E  GQ       K  I    A  + L  ++  GPPG GKT+
Sbjct: 15  DAPREDAPLADRLRPRALGEVIGQEHLTGP-KGAIGRMVASGK-LSSMVLWGPPGTGKTS 72

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEE 123
            A+++A  +G+ F + S  V +   DL               + +LF+DEIHR +   ++
Sbjct: 73  TARLLADAVGMRFVAISA-VFSGVADLKKAFAEADRMAAAGRKTLLFVDEIHRFNRAQQD 131

Query: 124 ILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
              P +E   + L+    E PS       LSR  ++            L DR        
Sbjct: 132 GFLPFVERGTVTLVGATTENPSFELNAALLSRAQVLILHRLDAEALGKLLDRAEALEGPL 191

Query: 182 FYEIEDLKTIVQ--RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
               E    ++    G     L   +           G   +   L RRV  +       
Sbjct: 192 PLTDEARAALIASADGDGRFLLNQAETLYNANIDAPLGPAELGLFLQRRVAVY------- 244

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
                           DK      +L                   ISA     R +    
Sbjct: 245 ----------------DKDREGHYNL-------------------ISALHKSLRGSDPQA 269

Query: 300 IEPYMIQQGFIQRTPRG--RLLMPIAWQHLGIDIPH 333
              Y+ +       P    R L+  A + +G+  P 
Sbjct: 270 ALYYLARMLTAGEEPLYVLRRLVRFASEDIGLADPQ 305


>gi|332638473|ref|ZP_08417336.1| recombination factor protein RarA [Weissella cibaria KACC 11862]
          Length = 428

 Score =  129 bits (323), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 71/319 (22%), Positives = 124/319 (38%), Gaps = 41/319 (12%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            +RPRT+EE  GQ       K+      A+   L  ++  GPPG GKT++A  +A     
Sbjct: 8   RMRPRTIEEVVGQQHLVGEGKIIHRMVTAK--MLSSMILYGPPGTGKTSIASAIAGSTKY 65

Query: 81  NFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137
            FR  +    +K    + A    +    VL +DEIHRL    ++ L P +E  ++ L+  
Sbjct: 66  AFRILNAATDSKKDLQIVAEEAKMSGTVVLLLDEIHRLDKTKQDFLLPHLESGRIVLIGA 125

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
             E P        LS    I + +++  +    +D   I I+    + +       RG  
Sbjct: 126 TTENPY-------LSILPAIRSRSQIFEVQPLSEDDMKIAIQRALTDKD-------RGLG 171

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR--DFAEVAHAKTITREIADAALLRLAI 255
                + ++A  ++   + G  R A   L                IT  I +  + R A+
Sbjct: 172 NFDAVLEEDAERQLVYATNGDLRSALNGLELAVKSTLPSEDGQIHITLPIIEETVQRKAL 231

Query: 256 --DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
             DK G    D+  ++ + ++  G     +T +A                +I+ G +   
Sbjct: 232 TADKDGDGHYDV--ISALQKSIRGS----DTDAALH----------YLARLIEAGDLPII 275

Query: 314 PRGRLLMPIAWQHLGIDIP 332
              R L  IA++ +G+  P
Sbjct: 276 S--RRLRVIAYEDIGLANP 292


>gi|328951016|ref|YP_004368351.1| AAA ATPase central domain protein [Marinithermus hydrothermalis DSM
           14884]
 gi|328451340|gb|AEB12241.1| AAA ATPase central domain protein [Marinithermus hydrothermalis DSM
           14884]
          Length = 431

 Score =  129 bits (323), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 75/327 (22%), Positives = 115/327 (35%), Gaps = 51/327 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RPR+LEE  GQ       K F    +     L  ++  GPPG+GKTTLA+V+A+
Sbjct: 9   PLAERVRPRSLEEVVGQEHLTGPGKPFRRMLEI--GRLHSMILWGPPGVGKTTLARVLAQ 66

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAME 130
            +   F   S  V A   ++   +           R VLF+DE+HR +   ++ L P +E
Sbjct: 67  GVRAEFIPLSA-VAAGVKEVREAVARAEAAARVGRRTVLFLDEVHRFNKAQQDALLPHVE 125

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
              L L+    E PS        SR        RV +L    +      ++      E L
Sbjct: 126 SGLLTLIGATTENPSFEVNPALRSR-------ARVYVLKPLEKADLLRVLQRALEHPEGL 178

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             +    A L  +A                     R      + A       +T   A  
Sbjct: 179 PGVAAEAAALDLIAAGAMG--------------DARRALAALELAAELGEGRVTVAAARE 224

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ-- 306
           AL        G  ++D            GG    +  SA     R +  D    Y+ +  
Sbjct: 225 ALGA------GGSRMD-----------KGGEAFYDLTSALHKAIRGSHVDAALYYLARLV 267

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +G        R L+ IA + +G+  P+
Sbjct: 268 EGGADPMYVARRLVRIAAEDVGLADPN 294


>gi|257870864|ref|ZP_05650517.1| AAA ATPase [Enterococcus gallinarum EG2]
 gi|257805028|gb|EEV33850.1| AAA ATPase [Enterococcus gallinarum EG2]
          Length = 425

 Score =  129 bits (323), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 69/321 (21%), Positives = 122/321 (38%), Gaps = 37/321 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RPR L+E  GQ       K+     +A+   L  ++  GPPG GKT++A  +A 
Sbjct: 4   PLAYRMRPRNLDEVVGQQHLVGPGKIIRRMVEAK--MLSSMILYGPPGTGKTSIASAIAG 61

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR  +     K    + A    +    +L +DE+HRL    ++ L P +E  ++ 
Sbjct: 62  STRYAFRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEVHRLDKTKQDFLLPHLESGKI- 120

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           +M+G       + IN +    I + T++  +  PLQ+   +         +      +RG
Sbjct: 121 IMIGATTENPYITINPA----IRSRTQIFEV-KPLQESDILAAIDAALADK------ERG 169

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI--TREIADAALLRL 253
                + +T+EA   ++  + G  R A   L         +    I  T  I +  + R 
Sbjct: 170 LGTESIQLTEEARLHLSRATNGDLRSALNGLELATRSTPPSSDGKIHLTLPIIEECVQRK 229

Query: 254 A--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
           A   DK G    D      +   F     G +  +A                +++ G + 
Sbjct: 230 ALTHDKDGDAHYD------VISAFQKSIRGSDVDAALH----------YLGRLVEAGDLA 273

Query: 312 RTPRGRLLMPIAWQHLGIDIP 332
                R LM I ++ +G+  P
Sbjct: 274 IIC--RRLMVIGYEDIGLANP 292


>gi|284035353|ref|YP_003385283.1| ATPase AAA [Spirosoma linguale DSM 74]
 gi|283814646|gb|ADB36484.1| AAA ATPase central domain protein [Spirosoma linguale DSM 74]
          Length = 423

 Score =  129 bits (323), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 72/322 (22%), Positives = 118/322 (36%), Gaps = 49/322 (15%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
             +RP+TL +  GQ +          A  A    L  ++  GPPG+GKTTLA ++A  + 
Sbjct: 10  ERVRPQTLNDVIGQRKLIGPTGALRRAVDA--GRLPSMILWGPPGVGKTTLALLLAEAVK 67

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
             F + S  + +   ++  +L+        V+FIDEIHR +   ++ L  A+E  Q+ L+
Sbjct: 68  RPFIALSA-INSGVKEIRDVLSRPSGMFPPVVFIDEIHRFNKSQQDALLGAVEKGQITLI 126

Query: 138 --VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
               E PS       LSR  +             L DR     +  F + + +   V+  
Sbjct: 127 GATTENPSFEVNSALLSRCQVYILEALSREELIQLVDR--AIAQDRFLQSKQIT--VESY 182

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL-- 253
             L  L+  D              R    LL  V   A VA    +  +    A+ +   
Sbjct: 183 DALLRLSGGDG-------------RKLLNLLELVA-SAHVAAEPLVITDEGVTAVAQQNI 228

Query: 254 -AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
              DK G    D+                   ISA +   R +  +    +M +      
Sbjct: 229 ARYDKSGEQHYDI-------------------ISAFIKSLRGSDPNAALYWMARMIVAGE 269

Query: 313 TP--RGRLLMPIAWQHLGIDIP 332
            P    R ++ +A + +G   P
Sbjct: 270 DPIFIARRMLIMASEDIGNANP 291


>gi|302901862|ref|XP_003048527.1| hypothetical protein NECHADRAFT_95752 [Nectria haematococca mpVI
           77-13-4]
 gi|256729460|gb|EEU42814.1| hypothetical protein NECHADRAFT_95752 [Nectria haematococca mpVI
           77-13-4]
          Length = 547

 Score =  129 bits (323), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 68/333 (20%), Positives = 115/333 (34%), Gaps = 65/333 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEAC--SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
                +RPRTL++  GQ        L+  IE+++     +  ++  G  G GKTT+A+ +
Sbjct: 134 PLAERMRPRTLDDVFGQDLVGPNGVLRSLIESSQ-----VPSMILWGASGTGKTTIARCI 188

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYP 127
           A+ +G  F   +        ++  L             + ++F DEIHR +   +++   
Sbjct: 189 AQMVGSRFIELNA-TSTGVAEVKKLFQEAANDLALTGRKTIIFCDEIHRFNKAQQDVFLK 247

Query: 128 AMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
            +E   + L+    E PS +     LSR       T                        
Sbjct: 248 PVEAGTVTLIGATTENPSFKVAAALLSRCRTFTLQT---------------------LTT 286

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT----I 241
           ED+ +I+QR  +            + A       R A    R   +  E+A + T    I
Sbjct: 287 EDVVSILQRAIREEESVYPSTPLLDEA-MITYLARFADGDARTALNLLELALSLTTREGI 345

Query: 242 TREIADAALLRL-AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           T+    AAL +    D+ G    D                   TISA     R    D  
Sbjct: 346 TQADIKAALTKTLVYDRAGDQHYD-------------------TISAFHKSVRGNDADAA 386

Query: 301 EPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
             Y+ +       P    R ++ IA + +G+  
Sbjct: 387 LYYLARMLQSGEDPLFIARRMVVIASEDVGLAD 419


>gi|148553805|ref|YP_001261387.1| recombination factor protein RarA [Sphingomonas wittichii RW1]
 gi|148498995|gb|ABQ67249.1| Recombination protein MgsA [Sphingomonas wittichii RW1]
          Length = 481

 Score =  129 bits (323), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 72/330 (21%), Positives = 110/330 (33%), Gaps = 58/330 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKAR---AEALDHVLFVGPPGLGKTTLAQV 73
                LRPRTL +  GQ           E A  R   A  L  ++  GPPG GKTT+A++
Sbjct: 63  PLAERLRPRTLADVIGQEHLTGP-----EGAIGRMVAAGRLSSLVLWGPPGTGKTTIARL 117

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYP 127
           +A  +G+ F   S  V +   DL  +     +      R +LF+DEIHR +   ++   P
Sbjct: 118 LADAVGLRFAPVSA-VFSGVADLKKIFAEAREHARIGTRTLLFVDEIHRFNRAQQDSFLP 176

Query: 128 AMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
            +ED  + L+    E PS       LSR  ++            L  R            
Sbjct: 177 YVEDGTVVLVGATTENPSFELNAALLSRAQVLILNRLDAAALGKLIAR------------ 224

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
              + I +R        +T+ A   +   + G  R        +   A            
Sbjct: 225 --AEEIEERAL-----PLTEGAREALVASADGDGRFLLNQAETLFSIAI----DHPLEPG 273

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
             AALL   +     D+                      ISA     R +       Y+ 
Sbjct: 274 ELAALLHRRMAVYDKDREGH----------------YNLISALHKSLRGSDPQAALYYLA 317

Query: 306 QQGFIQRTPRG--RLLMPIAWQHLGIDIPH 333
           +       P    R L+  A + +G+  P 
Sbjct: 318 RMLTAGEEPLYVLRRLVRFASEDIGLADPQ 347


>gi|317124709|ref|YP_004098821.1| recombination protein MgsA [Intrasporangium calvum DSM 43043]
 gi|315588797|gb|ADU48094.1| Recombination protein MgsA [Intrasporangium calvum DSM 43043]
          Length = 466

 Score =  129 bits (323), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 78/326 (23%), Positives = 124/326 (38%), Gaps = 41/326 (12%)

Query: 21  LLRPRTLEEFTGQ---VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
            +RPR+L+E  GQ   +   S L+  IE +   A  L  ++  GPPG GKTTLA +VA  
Sbjct: 30  RMRPRSLDEVRGQGSVLRPGSPLRRLIEGSGGAAGPLSAII-WGPPGTGKTTLAHLVATA 88

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAME 130
               F   S  V A   D+ +++ +          + VLF+DEIHR +   ++ L P +E
Sbjct: 89  ADRRFVELSA-VTAGVKDVRSVMESAVRERDLYGRQTVLFLDEIHRFTKAQQDALLPGVE 147

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +  + L+    E PS   +   LSR  LI                 G     +  ++   
Sbjct: 148 NRTVILVAATTENPSFSVIAPLLSRSVLITL---------------GSLSDEDIRDVVRS 192

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             + +RG     L + D+A   +   S G  R A   L      A  A     T +    
Sbjct: 193 ALVDERGFAGAHL-IDDDAMDHLVRTSGGDARRALTSLEAAAGVALDAEPAGRTDDTLV- 250

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
                    +G   ++        R    G    +  SA +   R +  D    Y+ +  
Sbjct: 251 --------LIGLAHVEQAIAHAAVRYDRTGDQHYDVASALIKSMRGSDVDAALHYLARML 302

Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIP 332
                PR   R ++  A + +G+  P
Sbjct: 303 EAGEDPRFIARRIVIAASEDVGMADP 328


>gi|150010979|gb|ABR57146.1| ATPase AAA family protein [Staphylococcus xylosus]
          Length = 425

 Score =  129 bits (323), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 66/326 (20%), Positives = 121/326 (37%), Gaps = 42/326 (12%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
             +   S +RP  ++E   Q        +     + +   L  ++F GPPG+GKT++A+ 
Sbjct: 2   SNEPLASRMRPSNIDEIISQEHLVGPKGIIRRMVETK--RLSSMIFYGPPGIGKTSIAKA 59

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMED 131
           ++      FR  +  V     D+  ++   +   + +L +DEIHRL    ++ L P +E+
Sbjct: 60  ISGSTQFKFRQLNA-VTNTKKDMQLIVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLEN 118

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
            ++ L+      P         SR  +            PL +             E   
Sbjct: 119 GKIVLIGATTSNPYHAINPAIRSRAQIFELY--------PLDENDIKVSLNRALNDE--- 167

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR-RVRDFAEVAHAKTITREIADA 248
              +RG       V ++A      +S+G  R A   L   V         + IT + A  
Sbjct: 168 ---ERGLASYNPIVDEDAMSYFTTQSQGDVRSALNALELAVLSSDTTDSQRYITLQDAKD 224

Query: 249 ALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
            L + A   DK G    D+  ++   ++  G  V              A+  L    +I+
Sbjct: 225 CLQKGAFVSDKDGDMHYDV--MSAFQKSIRGSDV------------NAALHYLAR--LIE 268

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIP 332
            G +      R L+ I+++ +G+  P
Sbjct: 269 AGDLPTIV--RRLLVISYEDIGLASP 292


>gi|322707738|gb|EFY99316.1| DNA replication ATPase [Metarhizium anisopliae ARSEF 23]
          Length = 551

 Score =  129 bits (323), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 65/334 (19%), Positives = 111/334 (33%), Gaps = 67/334 (20%)

Query: 17  ADISLLRPRTLEEFTGQVEAC--SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
                +RP TL++  GQ        L+  IE  +     +  ++  G  G GKTT+A+ +
Sbjct: 138 PLAERMRPTTLDDVCGQDLVGPNGVLRGLIETNR-----VPSMILWGASGTGKTTIARCI 192

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYP 127
           A  +G  F   +        +   L             R ++F DEIHR +   +++   
Sbjct: 193 AHMVGSRFIELNA-TSTGVSECKKLFQEAANELTLTGRRTIIFCDEIHRFNKAQQDVFLK 251

Query: 128 AMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
            +E   + L+    E PS +     LSR       +                        
Sbjct: 252 PVEAGTVTLIGATTENPSFKVANALLSRCRTFTLRS---------------------LTE 290

Query: 186 EDLKTIVQRGAKLTGLAV------TDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           +D+  I++R  +   +         DE    +A  S G  R A  LL             
Sbjct: 291 QDITGILKRAREAEEVVYPPTPLIDDEMMGYLARFSDGDARTALNLLEVALSLTTREG-- 348

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            IT+E   ++L +  +   G DQ                    ++ISA     R    D 
Sbjct: 349 -ITKEDIKSSLTKTLVYDRGGDQH------------------YDSISAFHKSVRGNDADA 389

Query: 300 IEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
              Y+ +       P    R ++ IA + +G+  
Sbjct: 390 ALYYLARMLQSGEDPLFIARRMVVIASEDVGLAD 423


>gi|153941104|ref|YP_001391867.1| recombination factor protein RarA [Clostridium botulinum F str.
           Langeland]
 gi|152937000|gb|ABS42498.1| ATPase, AAA family [Clostridium botulinum F str. Langeland]
 gi|295319891|gb|ADG00269.1| ATPase, AAA family [Clostridium botulinum F str. 230613]
          Length = 416

 Score =  129 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 74/332 (22%), Positives = 126/332 (37%), Gaps = 60/332 (18%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
               L+RP+ LE+F GQ    S  K      K   +++ + +F GPPG GKTTLA ++A 
Sbjct: 3   PLADLMRPKKLEDFVGQKHILSENKPLYNLMK--NKSICNSIFYGPPGTGKTTLANIMAN 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED-----RDVLFIDEIHRLSIIVEEILYPAMED 131
            +   F   +    A   D+  + +++         VL+IDE+   +   ++ L   +ED
Sbjct: 61  YVDKKFYRLNA-TTASIKDIQEITSSINSLLNYSGVVLYIDELQHFTKKQQQALLEFIED 119

Query: 132 FQLDLM--VGEGPSARSVKINLSRF--TLIAATTRVGLLT------NPLQDRFGIPIRLN 181
            ++ L+    E P     K  LSR          R  ++       N L D+ GI I+ +
Sbjct: 120 GRVILIASTTENPYFVIHKAILSRCNIFQFKPLNREDIILGLEKAINKLIDK-GINIKYS 178

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           F  +E +  I Q                       G  R A  +L    +     + +  
Sbjct: 179 FESLEYIGEICQ-----------------------GDYRKAYNILELAVNSHCGFNIEIT 215

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
              I   A   +  D  G +  +   L+   ++  G            S+   A+  L  
Sbjct: 216 LDYIESLAQSNIRADATGDEYYN--ILSAFQKSIRG------------SDADAAVHYLAR 261

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
             +I+ G I  T   R L  +A + +G+  P+
Sbjct: 262 --LIKSGDI--TSITRRLSVMAAEDIGLAYPN 289


>gi|332364543|gb|EGJ42314.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
           SK355]
          Length = 422

 Score =  129 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 68/326 (20%), Positives = 122/326 (37%), Gaps = 42/326 (12%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            +     +RP  +++  GQ     + K+     +A    L  ++  GPPG+GKT++A  +
Sbjct: 2   PENLALRMRPTDIDQIIGQQHLVGSGKIIRRMVEA--NRLSSMILYGPPGIGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           A      FR+ +  V +K      A         VL +DEIHRL    ++ L P +E   
Sbjct: 60  AGTTKFAFRTFNATVDSKKRLQEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGL 119

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + ++    E P         SR  +               D   I I+L   + E     
Sbjct: 120 VIMIGATTENPFFSVTPAIRSRVQIFELEPLSN-------DDIRIAIQLALTDKE----- 167

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA--EVAHAKTITREIADAA 249
             RG     + + DEA   IA+ + G  R A   L         +    + IT ++ + +
Sbjct: 168 --RGFD-FPVELDDEALDFIAISTNGDLRSAYNSLDLAVLSTPEDDKGIRHITLDVMENS 224

Query: 250 LLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           L +    +DK G    D+  L+ + ++  G  V              ++       +++ 
Sbjct: 225 LQKSYITMDKDGDGHYDV--LSALQKSIRGSDV------------NASLHYAAR--LVEA 268

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
             +      R L  IA++ +G+  P 
Sbjct: 269 RDLP--SLARRLTVIAYEDIGLANPD 292


>gi|73662441|ref|YP_301222.1| recombination factor protein RarA [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
 gi|72494956|dbj|BAE18277.1| conserved hypothetical protein [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 427

 Score =  129 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 66/323 (20%), Positives = 129/323 (39%), Gaps = 38/323 (11%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            +   S +RP  ++E   Q        +     + +   L  ++F GPPG+GKT++A+ +
Sbjct: 3   NEPLASRMRPNNIDEIISQEHLVGPKGIIRRMVETK--RLSSMIFYGPPGIGKTSIAKAI 60

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           +      FR  +  V     D+  ++   +   + +L +DEIHRL    ++ L P +E+ 
Sbjct: 61  SGSTQFKFRQLNA-VTNTKKDMQLIVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENG 119

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           ++ +++G   S     IN       A  +R  +      D   + +      ++      
Sbjct: 120 KI-VLIGATTSNPYHAIN------PAIRSRAQIFELYPLDENDVRV-----SLDRALNDS 167

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE-VAHAKTITREIADAALL 251
           +RG       V ++A      +S+G  R A   L      +E +   + IT + A   L 
Sbjct: 168 ERGLASYNPKVDEDAMAYFTTQSQGDVRSALNALELAVLSSENIDQQRHITLQDAKDCLQ 227

Query: 252 RLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           + A   DK G    D+  ++   ++  G  V              A+  L    +I+ G 
Sbjct: 228 KGAFVSDKDGDMHYDV--MSAFQKSIRGSDV------------NAALHYLAR--LIEAGD 271

Query: 310 IQRTPRGRLLMPIAWQHLGIDIP 332
           +      R L+ I+++ +G+  P
Sbjct: 272 LPTIV--RRLLVISFEDVGLASP 292


>gi|262066993|ref|ZP_06026605.1| replication-associated recombination protein A [Fusobacterium
           periodonticum ATCC 33693]
 gi|291379280|gb|EFE86798.1| replication-associated recombination protein A [Fusobacterium
           periodonticum ATCC 33693]
          Length = 174

 Score =  129 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 44/176 (25%), Positives = 71/176 (40%), Gaps = 12/176 (6%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            L   N    +     LRP+ L++F GQ +      V          +L + +F GPPG 
Sbjct: 2   NLFQNNYKNVEPLAYKLRPKNLDDFVGQEKLLGKDGVIRRLIL--NSSLSNSIFYGPPGC 59

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLS 118
           GK++L ++++  L  NF   +    A   D+  ++   +        R +LF+DEIHR +
Sbjct: 60  GKSSLGEIISNTLDCNFEKLNA-TTASVSDIRTMVETAKRNIELYNKRTILFLDEIHRFN 118

Query: 119 IIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
              ++ L    ED  L L+    E P        LSR  +           + L D
Sbjct: 119 KNQQDALLSYTEDGTLTLIGATTENPYYNINNALLSRVMVFEFRALTNEDISKLID 174


>gi|260583889|ref|ZP_05851637.1| ATPase, AAA family [Granulicatella elegans ATCC 700633]
 gi|260158515|gb|EEW93583.1| ATPase, AAA family [Granulicatella elegans ATCC 700633]
          Length = 424

 Score =  129 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 74/333 (22%), Positives = 122/333 (36%), Gaps = 55/333 (16%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           +       +RP  LEE  GQ    +  K+      A+   L  ++  GPPG+GKT++A  
Sbjct: 6   KNQPLAYRMRPTCLEEIVGQQHLVAPGKIIARMIAAKQ--LSSMILYGPPGIGKTSIASA 63

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMED 131
           +A      FR+ +     K  +L  ++   +     +L +DEIHRL    ++ L P +E+
Sbjct: 64  IAGTTKYAFRTLNAATDTK-KELQIVIEEAKMSGTVILLLDEIHRLDKPKQDFLLPHLEN 122

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
            ++ +++G       + IN                   ++ R  I   L     E++   
Sbjct: 123 GRV-ILIGATTENPYIAIN-----------------PAIRSRTQI-FELIPLTPEEIHQA 163

Query: 192 VQR-------GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT--IT 242
           + R       G     + V D A       S G  R +   L            +   IT
Sbjct: 164 LNRALTDETKGLGQYDVEVEDGAMHTFTHFSNGDVRSSLNALELAVKSTPENEDRKIIIT 223

Query: 243 REIADAALLR--LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
            EIA   L R   A DK G    D      +   F          S   S+   A+  + 
Sbjct: 224 EEIAGNCLQRKVFAHDKNGDQHYD------VISAFQK--------SIRGSDVDAALHYMA 269

Query: 301 EPYMIQQG-FIQRTPRGRLLMPIAWQHLGIDIP 332
              +I+ G  I      R L+ IA++ +G+  P
Sbjct: 270 R--LIEAGELITLI---RRLLVIAYEDIGLANP 297


>gi|326382066|ref|ZP_08203759.1| recombination factor protein RarA [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326199492|gb|EGD56673.1| recombination factor protein RarA [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 435

 Score =  128 bits (322), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 64/344 (18%), Positives = 114/344 (33%), Gaps = 59/344 (17%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M +  L   + +        LRP++L    GQ                    L  ++  G
Sbjct: 1   MPQPSLFEPDDAG-RPLADRLRPQSLAAVVGQEHVLGPDGAIGRMVTEH--RLASMILWG 57

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIH 115
           PPG GKTT+A+++A +  + F   S    +   DL  +    + R       +LF+DE+H
Sbjct: 58  PPGCGKTTIARLLAEQTDLAFEPLSA-TFSGVADLRKVFLAAQKRREVGQGTLLFVDEVH 116

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R +   ++   P +ED  + L+    E PS       LSR  +                 
Sbjct: 117 RFNRAQQDSFLPYVEDGTIVLVGATTENPSFELNAALLSRCQVFVLKR------------ 164

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTG--LAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
                     +   L T++ R   L    L ++++    +   + G  R    L+ +++ 
Sbjct: 165 ---------LDEAALTTLIGRAESLLRRALPLSEDGRQALIAMADGDGRYLLNLVEQLQH 215

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
            +       +   +   A      DK      +L                   ISA    
Sbjct: 216 VSGTLDVDGLVDLVQRRA---PLYDKSQEGHYNL-------------------ISALHKS 253

Query: 292 PRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            R +  D    ++ +       P    R L+  A + +GI  P 
Sbjct: 254 MRGSDPDAALYWLARMLDGGEDPLYVARRLVRFASEDVGIADPD 297


>gi|322806907|emb|CBZ04477.1| ATPase, AAA family [Clostridium botulinum H04402 065]
          Length = 416

 Score =  128 bits (322), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 74/332 (22%), Positives = 126/332 (37%), Gaps = 60/332 (18%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
               L+RP+ LE+F GQ    S  K      K   +++ + +F GPPG GKTTLA ++A 
Sbjct: 3   PLADLMRPKKLEDFVGQKHILSENKPLYNLMK--NKSICNSIFYGPPGTGKTTLANIMAN 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED-----RDVLFIDEIHRLSIIVEEILYPAMED 131
            +   F   +    A   D+  + +++         VL+IDE+   +   ++ L   +ED
Sbjct: 61  YVDKKFYRLNA-TTASIKDIQEITSSINSLLNYSGVVLYIDELQHFTKKQQQALLEFIED 119

Query: 132 FQLDLM--VGEGPSARSVKINLSRF--TLIAATTRVGLLT------NPLQDRFGIPIRLN 181
            ++ L+    E P     K  LSR          R  ++       N L D+ GI I+ +
Sbjct: 120 GRVILIASTTENPYFVIHKAILSRCNIFQFKPLNREDIILGLEKAINKLIDK-GINIKYS 178

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           F  +E +  I Q                       G  R A  +L    +     + +  
Sbjct: 179 FESLEYIGEICQ-----------------------GDYRKAYNILELAVNSHCGINIEIT 215

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
              I   A   +  D  G +  +   L+   ++  G            S+   A+  L  
Sbjct: 216 LDYIESLAQSNIRADATGDEYYN--ILSAFQKSIRG------------SDADAAVHYLAR 261

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
             +I+ G I  T   R L  +A + +G+  P+
Sbjct: 262 --LIKSGDI--TSITRRLSVMAAEDIGLAYPN 289


>gi|307295569|ref|ZP_07575405.1| AAA ATPase central domain protein [Sphingobium chlorophenolicum
           L-1]
 gi|306878608|gb|EFN09828.1| AAA ATPase central domain protein [Sphingobium chlorophenolicum
           L-1]
          Length = 440

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 75/341 (21%), Positives = 118/341 (34%), Gaps = 62/341 (18%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKAR---AEALDHVLFVGPPG 64
            S     +      LRPRTL +  GQ           E A  R   A  L  ++  GPPG
Sbjct: 13  FSDAAPADAPLADKLRPRTLADVVGQDHLTGP-----EGAIGRMVAAGRLSSIILWGPPG 67

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLS 118
            GKTT+++++A  +G+ F   S  V +   DL  +    +D      + +LF+DEIHR +
Sbjct: 68  TGKTTISRLLADAVGMRFEPISA-VFSGVADLKKVFAAAKDHARRGEKTLLFVDEIHRFN 126

Query: 119 IIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
              ++   P +ED  + L+    E PS       LSR  ++            L DR   
Sbjct: 127 RAQQDSFLPFVEDGTVTLVGATTENPSFELNAALLSRAQVLILRRLDAGALEQLLDR--- 183

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
                       + + +R      L +   A   +   + G  R    LL +V     + 
Sbjct: 184 -----------AEALTER-----PLPLDAAAREALLASADGDGRF---LLNQVETLYSID 224

Query: 237 HAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRD 294
             + +      A L R     DK      +L                   ISA     R 
Sbjct: 225 IPEPLDPAGLSALLHRRVAVYDKDREGHYNL-------------------ISALHKSLRG 265

Query: 295 AIEDLIEPYMIQQGFIQRTPRG--RLLMPIAWQHLGIDIPH 333
           +       Y+ +       P    R L+  A + +G+  P 
Sbjct: 266 SDPQAALYYLARMLTAGEEPLYVLRRLVRFAVEDIGLADPQ 306


>gi|187736155|ref|YP_001878267.1| ATPase AAA [Akkermansia muciniphila ATCC BAA-835]
 gi|187426207|gb|ACD05486.1| AAA ATPase central domain protein [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 463

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 69/329 (20%), Positives = 111/329 (33%), Gaps = 53/329 (16%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           +      LRP  LE+  GQ             A   +  +   +  GPPG GKTTLA+++
Sbjct: 19  DRPLADRLRPSALEDIMGQDHLLGEGGPLRLMA--DSGKMTSFILWGPPGCGKTTLARIL 76

Query: 75  ARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           A    ++F + S        + KA D AA         +LF+DEIHR +   ++   P +
Sbjct: 77  ATRTSMHFAALSAVFSGMADLRKAFDEAARRREYGHGTLLFVDEIHRFNRAQQDGFLPYV 136

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E+  + L+    E PS       LSR                          ++  +   
Sbjct: 137 ENGTVTLVGATTENPSFELNSALLSRCK---------------------VFVMHSLDAPA 175

Query: 188 LKTIVQRGAKLTG--LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           L++I++R   L    L +  EA   +   + G  R    L+  V D             +
Sbjct: 176 LESIIERAETLLQRELPLAPEARATLIELADGDGRYLINLMESVFDLC------KPDEML 229

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
              ALL++   +      D            G       ISA     R +  D    +  
Sbjct: 230 GTDALLKIVQQRAPVYDKDRE----------GH---YNLISALHKSLRGSDTDAALYWAA 276

Query: 306 QQGFIQRTPRG--RLLMPIAWQHLGIDIP 332
           +       P    R L   A + + +  P
Sbjct: 277 RMLEGGEDPLYLLRRLTRFAMEDISLADP 305


>gi|302874689|ref|YP_003843322.1| MgsA AAA+ ATPase-like [Clostridium cellulovorans 743B]
 gi|307690699|ref|ZP_07633145.1| recombination factor protein RarA [Clostridium cellulovorans 743B]
 gi|302577546|gb|ADL51558.1| MgsA AAA+ ATPase-like [Clostridium cellulovorans 743B]
          Length = 424

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 60/326 (18%), Positives = 115/326 (35%), Gaps = 45/326 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP+ +EE  GQ       K+  +  +++   + +++F GPPG GKTT+A ++A+
Sbjct: 3   PLADRLRPQVIEEVVGQSHLIGQNKILTKIIESQH--IPNMIFYGPPGCGKTTVANIIAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE-----DRDVLFIDEIHRLSIIVEEILYPAMED 131
                F   +    A   D+  ++  L+        +L++DEI   +   ++ L   +E+
Sbjct: 61  ATNKRFFKLNA-TNASTKDIKEIILELDTFMGAKGVLLYLDEIQNFNKKQQQSLLEFIEN 119

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             + L+    E P        LSR                                +D++
Sbjct: 120 GSITLIASTTENPYFYVYNAILSRSN---------------------VFEFKMVSSDDIE 158

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
             + R  ++                 +    IAG  +R+  +  E+A   +  ++     
Sbjct: 159 KALMRAVEVLQNDFKSSKILLEDEALKYISAIAGGDVRKALNALELAVFSSKAKDNIIK- 217

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY---MIQ 306
                     +D    +    I      G    + +SA     R +  D    Y   +I+
Sbjct: 218 ----IDINAAYDATQRK----IMNFDKDGDGHYDVLSAFQKSIRGSDADAAVHYLARLIR 269

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIP 332
            G +      R LM IA + +G+  P
Sbjct: 270 GGDLLSIC--RRLMVIACEDIGLAFP 293


>gi|326571741|gb|EGE21754.1| recombination factor protein RarA [Moraxella catarrhalis BC8]
          Length = 412

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 73/325 (22%), Positives = 115/325 (35%), Gaps = 48/325 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP TL+   GQ    S           R   L  ++  G  G+GKTTLA ++A 
Sbjct: 3   PLAERMRPTTLDAVIGQTHLLSEGAPIFN--IVRQGFLPSLILHGSAGIGKTTLAMLLAD 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTN----LEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
            +G  F   S  V +   +L  +L +      +  V+F+DEIHR +   ++ L  A+E  
Sbjct: 61  AVGRPFHPLSA-VSSGVKELREVLRSDDGLFHEPPVVFVDEIHRFNKAQQDALLQAVETG 119

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           ++ L+    E PS       LSR  +            PL D     + +     + L  
Sbjct: 120 EITLIGATTENPSFSVNNALLSRCQVYKL--------EPLSDDEIYALIVRAIRQDTL-- 169

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
                  L    +       +   S+G  R A  LL  V    E       +  +A A  
Sbjct: 170 -------LKTKDIQINNLAALIDLSQGDGRRALNLLELVAAAPEPIIIDNASV-VAVAGQ 221

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
             +  DK G    DL                   ISA +   R +  D    +M +    
Sbjct: 222 PLVRYDKSGDGHYDL-------------------ISAMIKSVRGSDADAAIYWMARILAA 262

Query: 311 QRTPR--GRLLMPIAWQHLGIDIPH 333
              P    R L+ +A + +G+  P+
Sbjct: 263 GEDPAFVARRLVILASEDIGLANPN 287


>gi|156553266|ref|XP_001599519.1| PREDICTED: similar to werner helicase interacting protein [Nasonia
           vitripennis]
          Length = 462

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 67/339 (19%), Positives = 118/339 (34%), Gaps = 36/339 (10%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           N          +RP  L ++ GQ        +  +    R   +  ++  GPPG GKT+L
Sbjct: 62  NKKSHAPLAEKMRPNELSDYVGQSHLIGPKTLLHD--LLRNGEIPSMILWGPPGCGKTSL 119

Query: 71  AQVVARELG-----VNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSI 119
             V+ +E                  +   D+   +T  E       R V+F+DEIHR + 
Sbjct: 120 VNVIMQESKKLSDIPVKFIKLSATTSSINDVRKAVTEAENQAKQGRRTVVFMDEIHRFNK 179

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           + ++I  P +E     L+    E PS+      LSR  +             L       
Sbjct: 180 LQQDIFLPHVEAGTFILIGATTENPSSGLNSALLSRCRVFVLKKLQKEN---LVSILMKA 236

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
           I++   E+     I+ +    T   V  +    +A    G  R+A   L      A V++
Sbjct: 237 IKMMDGEVVTESEIISKVDSDTKFFVEQKILEWLAEACDGDARVALGGLEMTVQ-ARVSN 295

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV-GIETISAGLSEPRDAI 296
           A   ++ I               +  D+++    A++  G     I  + + L     A 
Sbjct: 296 ANISSKPIK-------------LNLNDVKHSLEKAQSLTGKKSDNISQLYSALHHSIVAD 342

Query: 297 ED-LIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           ED     ++ +       P    R L+ IA + +G+   
Sbjct: 343 EDNAALYWLARIMDTGEDPVYIARKLVRIASEDIGLADD 381


>gi|167769902|ref|ZP_02441955.1| hypothetical protein ANACOL_01243 [Anaerotruncus colihominis DSM
           17241]
 gi|167667893|gb|EDS12023.1| hypothetical protein ANACOL_01243 [Anaerotruncus colihominis DSM
           17241]
          Length = 421

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 64/323 (19%), Positives = 115/323 (35%), Gaps = 43/323 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+TL++  GQ       KV     ++    + +++F GP G+GKTT+A ++A+
Sbjct: 4   PLADRIRPQTLDDVVGQEHLLGRDKVLRRMVESGN--IPNLIFYGPSGVGKTTVASIIAK 61

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE-----DRDVLFIDEIHRLSIIVEEILYPAMED 131
             G      +G   A   D+  ++            +L++DEI  L+   ++ L   +E+
Sbjct: 62  RAGKKLCKLNG-TTASTSDIRDVVGETNTIDGIGGVILYLDEIQYLNKKQQQTLLEFIEN 120

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             + L+    E P        LSR T+                R                
Sbjct: 121 GSITLIASTTENPYFYVYNAVLSRSTVFEFKPVQPQAVQRAVQRAFEAAGEA-------- 172

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
                      L V D     IA    G  R A   +  +   A      T+      A 
Sbjct: 173 -------AGRRLEVEDGVYEYIASACGGDVRKAVNAVELLALAAGANQTVTLEEARQVAQ 225

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
              +  D+ G +  D   L+ + ++  G            S+   A+  L    +++ G 
Sbjct: 226 KSAMRYDRDGDEHYD--ILSALQKSIRG------------SDENAALHYLAR--LLEAGD 269

Query: 310 IQRTPRGRLLMPIAWQHLGIDIP 332
           +  +P  R L+ IA + +G+  P
Sbjct: 270 L-LSP-CRRLLVIASEDIGLAYP 290


>gi|169609180|ref|XP_001798009.1| hypothetical protein SNOG_07677 [Phaeosphaeria nodorum SN15]
 gi|111064023|gb|EAT85143.1| hypothetical protein SNOG_07677 [Phaeosphaeria nodorum SN15]
          Length = 550

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 66/329 (20%), Positives = 111/329 (33%), Gaps = 60/329 (18%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP +L++  GQ        +           L  ++  G PG GKTT+A+++A 
Sbjct: 133 PLAERMRPTSLDDVCGQE-LVGPNGILR--GMVNEGKLPSLVLWGRPGTGKTTIARLIAN 189

Query: 77  ELGVNFRSTSG------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
             G  F   +        V    G+ A  L     + ++F DE+HR S   ++     +E
Sbjct: 190 TSGARFVEINSTSTKLEEVRKIFGEAARDLQLTGRKTIVFCDELHRFSKTQQDAFLGPVE 249

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
              + L+    E PS + +   LSR                                 DL
Sbjct: 250 SGIITLIAATTENPSFKVISALLSRCRTFTLDDLKEP---------------------DL 288

Query: 189 KTIVQRGA---KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
             I++R A   K     +  +     A  S G  R A  LL    + +    +  IT+E 
Sbjct: 289 VRILERAAVAEKCESPLIDKDMLQYFARFSDGDARTALNLLDLAMNLS---KSPEITKEK 345

Query: 246 ADAALLRL-AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
              +L +    D+ G    D                   +ISA     R +  +    Y+
Sbjct: 346 ILQSLTKTLVYDRAGDQHYD-------------------SISAMHKSIRGSDANAALYYL 386

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
            +       PR   R L+ +A + +G+  
Sbjct: 387 ARMLESGEDPRYIARRLIVVASEDVGLAD 415


>gi|126653989|ref|ZP_01725824.1| hypothetical protein BB14905_09600 [Bacillus sp. B14905]
 gi|126589506|gb|EAZ83649.1| hypothetical protein BB14905_09600 [Bacillus sp. B14905]
          Length = 420

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 62/326 (19%), Positives = 119/326 (36%), Gaps = 55/326 (16%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP TL+E  G  +         +  +   E +  +L  G PG+GKT++A  +A    + 
Sbjct: 1   MRPLTLDEIVGHQDFIGPNTALYKMIQ--NEHVPSMLLYGEPGIGKTSIANAIAGSSQLP 58

Query: 82  FRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137
           F + +    A   D+  ++       + +LF+DEIHR + + ++ L P +E+  + L+  
Sbjct: 59  FFALNA-TRAGKKDVEDIVQEARISGKVLLFLDEIHRFNKLQQDTLLPHVENGSIVLIGA 117

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ---- 193
             E P                       +   ++ R G   +L     E+L  +V+    
Sbjct: 118 TTENPYH--------------------DVNPAIRSRCGEIYQLKRLTKENLMELVEKALA 157

Query: 194 ---RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
              RG       +T      IA  + G  R A  LL  +   ++    +TI  +      
Sbjct: 158 DEKRGLGKYHFVLTPSQIEHIAEAANGDARKALTLLESIYYASDEVEGQTIAADHI---- 213

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY---MIQQ 307
                       +D     +       G      +SA     R +  +    Y   +++ 
Sbjct: 214 ------------IDHLISRIGVYGDKKGSHFYNLLSALQKSVRGSDTNAALYYLAHLLET 261

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
           G +      R L+ +A++ +G+  P 
Sbjct: 262 GDLVAVS--RRLLVMAYEDIGLANPE 285


>gi|325954336|ref|YP_004237996.1| ATPase AAA [Weeksella virosa DSM 16922]
 gi|323436954|gb|ADX67418.1| AAA ATPase central domain protein [Weeksella virosa DSM 16922]
          Length = 424

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 63/330 (19%), Positives = 110/330 (33%), Gaps = 53/330 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP++L+++  Q                + + +  ++F GPPG GKTTLAQ++A 
Sbjct: 4   PLAERMRPKSLDQYINQKHLLGENAPIR--MMLQHDMIASMIFWGPPGTGKTTLAQLIA- 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE--------DRDVLFIDEIHRLSIIVEEILYPA 128
           EL      T   + A   D+  ++   +           +LFIDEIHR +   ++ L  A
Sbjct: 61  ELSNRPFYTLSAINAGVKDVREVIDKAKSQNLFTTEKNPILFIDEIHRFNKSQQDSLLSA 120

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           +E   + L+    E PS   V   LSR  +      V      L   F      N    +
Sbjct: 121 VEKGYITLIGATTENPSFEVVPALLSRAQVYTLHALVKEDLEDLL--FRAIQEDNLLSTK 178

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
            ++                         S G  R        V +         IT E  
Sbjct: 179 KIRLDETDAL---------------IRFSGGDARKLLNAFELVVNSFGENEEIIITNETV 223

Query: 247 DAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
              + +     DK G    D   ++   ++  G            S+P+  +      ++
Sbjct: 224 QQRIQQNTARYDKTGEQHYD--IVSAFIKSIRG------------SDPQATV-----YWL 264

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
            +        +   R ++  A + +G   P
Sbjct: 265 ARMIEGGEDVKFIARRMLIAASEDIGAANP 294


>gi|226949925|ref|YP_002805016.1| ATPase, AAA family [Clostridium botulinum A2 str. Kyoto]
 gi|226840930|gb|ACO83596.1| ATPase, AAA family [Clostridium botulinum A2 str. Kyoto]
          Length = 416

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 74/332 (22%), Positives = 125/332 (37%), Gaps = 60/332 (18%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
               L+RP+ LE+F GQ    S  K      K   +++ + +F GPPG GKTTLA ++A 
Sbjct: 3   PLADLMRPKKLEDFVGQKHILSENKPLYNLMK--NKSICNSIFYGPPGTGKTTLANIMAN 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED-----RDVLFIDEIHRLSIIVEEILYPAMED 131
            +   F   +    A   D+  + +++         VL+IDE+   +   ++ L   +ED
Sbjct: 61  YVDKKFYRLNA-TTASIKDIQEITSSINSLLNYSGVVLYIDELQHFTKKQQQALLEFIED 119

Query: 132 FQLDLM--VGEGPSARSVKINLSRF--TLIAATTRVGLLT------NPLQDRFGIPIRLN 181
            ++ L+    E P     K  LSR          R  ++       N L D+ GI I+  
Sbjct: 120 GRVILIASTTENPYFVIHKAILSRCNIFQFKPLNREDIILGLEKAINKLIDK-GINIKYT 178

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           F  +E +  I Q                       G  R A  +L    +     + +  
Sbjct: 179 FESLEYISEICQ-----------------------GDYRKAYNILELAVNSHCGFNIEIN 215

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
              I   A   +  D  G +  +   L+   ++  G            S+   A+  L  
Sbjct: 216 LDYIESLAQSNIRADATGDEYYN--ILSAFQKSIRG------------SDADAAVHYLAR 261

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
             +I+ G I  T   R L  +A + +G+  P+
Sbjct: 262 --LIKSGDI--TSITRRLSVMAAEDIGLAYPN 289


>gi|238879198|gb|EEQ42836.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 678

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 70/334 (20%), Positives = 129/334 (38%), Gaps = 39/334 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP++L++F GQ +            +A  + +   L  G PG+GKT+LA+++A+
Sbjct: 165 PLAHRLRPKSLDDFFGQEKLVGENGALRNIIQA--DIIPSFLLWGVPGIGKTSLARIIAK 222

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAM 129
                F   SG + + A  L  +    E        R +LF+DEIHR +  V+++L P +
Sbjct: 223 TTSCKFVELSG-IDSNAKRLKEVFVQAENHKNLSGQRTILFLDEIHRFNKAVQDLLLPVI 281

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ-DRFGIPIRLNFYEIE 186
           E   L ++    E PS       LSR            +  PL  D     +    +E+ 
Sbjct: 282 EKGTLTVIGATTENPSFNLNNALLSRMHT--------FVMEPLTVDSLIKILTRALFEVN 333

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
            ++  +     L  +++  +A   IA    G  R+A  +L  +  +      K+      
Sbjct: 334 RVRKNL---YGLHYISLQKDAYHYIAELCMGDSRVALNILETINAYLSADKFKSTVNADD 390

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFG-------GGPVGIETISAGLSEPRDAIEDL 299
           +         K G  ++    L  + ++          G    + ISA     R +  + 
Sbjct: 391 EQT------KKQGVIKVSADLLKPLMKSRDFHQFYDRNGDSHYDIISAFHKSVRGSDPNA 444

Query: 300 IEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
              Y+++       P    R ++ IA + +G+  
Sbjct: 445 AMFYLVKMLSGGEDPLFIMRRMIVIASEDIGLRD 478


>gi|119716631|ref|YP_923596.1| recombination factor protein RarA [Nocardioides sp. JS614]
 gi|119537292|gb|ABL81909.1| Recombination protein MgsA [Nocardioides sp. JS614]
          Length = 456

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 80/341 (23%), Positives = 128/341 (37%), Gaps = 57/341 (16%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPG 64
           LS N          +RPRTL+E  GQ +     S L+  +E      +    +L  GPPG
Sbjct: 20  LSANTHASAPLAVRMRPRTLDELVGQAQLRAAGSPLRRLVE-----GDQSMSLLLWGPPG 74

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRL 117
            GKTT+A +V+++    F   S  V A   ++ A +              VLF+DE+HR 
Sbjct: 75  TGKTTIAAIVSQQTDRRFVEVSA-VSAGVKEVRAAIDAARAELAGGGRETVLFVDEVHRF 133

Query: 118 SIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
           S   ++ L P +E+  + L+    E P    +   LSR  L+   +        + DR  
Sbjct: 134 SKAQQDALLPGVENRWVTLIAATTENPFFSVISPLLSRSLLLRLESLDDDDVRAVLDRAI 193

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
                            +RG     + V D+A   +   + G  R +   L      A  
Sbjct: 194 TD---------------ERGLAG-SVGVDDDALGHLVRLAGGDARRSLTYLEAAAGAALA 237

Query: 236 AHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
              +T+    A+ A+ R A   D+ G    D+                   +SA +   R
Sbjct: 238 QGLETVDLATAETAVDRAAVRYDRQGDQHYDV-------------------VSAFIKSVR 278

Query: 294 DAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
            +  D    Y+ +       PR   R LM +A + +G+  P
Sbjct: 279 GSDADAALHYLARMIEAGEDPRFIARRLMILASEDVGLADP 319


>gi|315498196|ref|YP_004087000.1| aaa atpase central domain protein [Asticcacaulis excentricus CB 48]
 gi|315416208|gb|ADU12849.1| AAA ATPase central domain protein [Asticcacaulis excentricus CB 48]
          Length = 451

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 69/328 (21%), Positives = 108/328 (32%), Gaps = 56/328 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP+TL E  GQ            A       L  ++  GPPG+GKTT+A+++A 
Sbjct: 30  PLAERLRPQTLSEIVGQDHLLGEGGAIARAIDR--GFLPSLILWGPPGVGKTTIARLLAA 87

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAME 130
            +G  F+  S  V +   DL       + R       VLF+DEIHR +   ++   P +E
Sbjct: 88  SVGYEFQQISA-VFSGVADLKKAFEYAQARRTQGVRSVLFVDEIHRFNRAQQDSFLPYVE 146

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
              + L+    E PS       LSR  +                           + E +
Sbjct: 147 AGVVTLIGATTENPSFELNGALLSRCQVFVLKR---------------------LDDEAM 185

Query: 189 KTIVQRGAKLTG--LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             ++ R     G  L + DEA   +   + G  R    L+  +               + 
Sbjct: 186 DRLIARAETHLGHALPLMDEAKETLKGLADGDGRYLLTLIESLASMG-------FEAPLN 238

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
             ALL+    +      D            G       ISA     R +  D    +  +
Sbjct: 239 SDALLQNLQKRRPNYDKDRE----------GH---YNLISALHKSVRGSDPDAALYWFAR 285

Query: 307 QGFIQRTPR--GRLLMPIAWQHLGIDIP 332
                  P    R +  +A + +G   P
Sbjct: 286 MLQGGEDPLYIVRRMQRMASEDIGNADP 313


>gi|68468917|ref|XP_721517.1| hypothetical protein CaO19.3019 [Candida albicans SC5314]
 gi|68469463|ref|XP_721246.1| hypothetical protein CaO19.10537 [Candida albicans SC5314]
 gi|46443155|gb|EAL02439.1| hypothetical protein CaO19.10537 [Candida albicans SC5314]
 gi|46443437|gb|EAL02719.1| hypothetical protein CaO19.3019 [Candida albicans SC5314]
          Length = 678

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 70/334 (20%), Positives = 129/334 (38%), Gaps = 39/334 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP++L++F GQ +            +A  + +   L  G PG+GKT+LA+++A+
Sbjct: 165 PLAHRLRPKSLDDFFGQEKLVGENGALRNIIQA--DIIPSFLLWGVPGIGKTSLARIIAK 222

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAM 129
                F   SG + + A  L  +    E        R +LF+DEIHR +  V+++L P +
Sbjct: 223 TTSCKFVELSG-IDSNAKRLKEVFVQAENHKNLSGQRTILFLDEIHRFNKAVQDLLLPVI 281

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ-DRFGIPIRLNFYEIE 186
           E   L ++    E PS       LSR            +  PL  D     +    +E+ 
Sbjct: 282 EKGTLTVIGATTENPSFNLNNALLSRMHT--------FVMEPLTVDSLIKILTRALFEVN 333

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
            ++  +     L  +++  +A   IA    G  R+A  +L  +  +      K+      
Sbjct: 334 RVRKNL---YGLHYISLQKDAYHYIAELCMGDSRVALNILETINAYLSADKFKSTVNADD 390

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFG-------GGPVGIETISAGLSEPRDAIEDL 299
           +         K G  ++    L  + ++          G    + ISA     R +  + 
Sbjct: 391 EQT------KKQGVIKVSADLLKPLMKSRDFHQFYDRNGDSHYDIISAFHKSVRGSDPNA 444

Query: 300 IEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
              Y+++       P    R ++ IA + +G+  
Sbjct: 445 AMFYLVKMLSGGEDPLFIMRRMIVIASEDIGLRD 478


>gi|332292456|ref|YP_004431065.1| AAA ATPase central domain protein [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332170542|gb|AEE19797.1| AAA ATPase central domain protein [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 425

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 65/331 (19%), Positives = 115/331 (34%), Gaps = 56/331 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP+ LE++  Q           +A KA    +  ++  GPPG+GKTTLA +++ 
Sbjct: 4   PLAERLRPKKLEDYLSQQHLVGPNGSLQQALKA--GIIPSLILWGPPGIGKTTLATIISE 61

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED--------RDVLFIDEIHRLSIIVEEILYPA 128
           E    F + S  + +   D+  ++   +           +LFIDEIHR S   ++ L  A
Sbjct: 62  ESNRPFYTLSA-INSGVKDIRDVIDKAKQSGGLFTQKNPILFIDEIHRFSKSQQDSLLGA 120

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           +E   + L+    E PS   +   LSR  +             L +R             
Sbjct: 121 VERGWVTLIGATTENPSFEVIPALLSRCQVYILKPFDKKDLELLLNR------------- 167

Query: 187 DLKTIVQRG-AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
               I +    K   + + +  A      S G  R    +   +    E      +T ++
Sbjct: 168 ---AITEDSILKKKDITLKETEALLFL--SGGDARKLLNIFELIVT-TEPQKEVIVTNDM 221

Query: 246 ADAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
             + + +     DK G    D+                   ISA +   R +  +    +
Sbjct: 222 VRSKVQQNIVRYDKTGEQHYDI-------------------ISAFIKSIRGSDPNAAVYW 262

Query: 304 MIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           + +        +   R L+  A + +G   P
Sbjct: 263 LARMIEGGEDVKFIARRLIIAASEDIGNANP 293


>gi|256820268|ref|YP_003141547.1| recombination factor protein RarA [Capnocytophaga ochracea DSM
           7271]
 gi|256581851|gb|ACU92986.1| AAA ATPase central domain protein [Capnocytophaga ochracea DSM
           7271]
          Length = 426

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 59/331 (17%), Positives = 111/331 (33%), Gaps = 55/331 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP +L ++ GQ           +  +     L  ++F GPPG GKTTLA ++A 
Sbjct: 4   PLAERMRPTSLAQYVGQEHLVGAQGALRQQIER--GLLPSLIFWGPPGTGKTTLANIIAH 61

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE--------DRDVLFIDEIHRLSIIVEEILYPA 128
           +    F + S  + +   ++  ++   +           ++FIDEIHR +   ++ L  A
Sbjct: 62  QSNRAFYTLSA-ISSGIKEVREVIDQSKQSGGLFTTQNPIVFIDEIHRFNKTQQDSLLQA 120

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           +E   + L+    E PS   +   LSR  +                   I       ++E
Sbjct: 121 VEKGWITLIGATTENPSFEVIPALLSRCQVY------------------ILNAFERKDLE 162

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMR-SRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
            L         +      +    E  +R S G  R        + +         IT + 
Sbjct: 163 QLLHNAITQDAILKTKTIELQETEALLRLSGGDGRKLLNTFELIVNATPEGEPVVITNDS 222

Query: 246 ADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
               + +     DK G    D+                   ISA +   R +  +    +
Sbjct: 223 VLRLVQKNTVLYDKTGEQHYDI-------------------ISAFIKSIRGSDPNGAVYW 263

Query: 304 MIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           + +        +   R ++ +A + +G   P
Sbjct: 264 LARMIEGGEDVKFIARRMLILASEDIGNANP 294


>gi|168182648|ref|ZP_02617312.1| ATPase, AAA family [Clostridium botulinum Bf]
 gi|237796008|ref|YP_002863560.1| recombination factor protein RarA [Clostridium botulinum Ba4 str.
           657]
 gi|182674164|gb|EDT86125.1| ATPase, AAA family [Clostridium botulinum Bf]
 gi|229261667|gb|ACQ52700.1| ATPase, AAA family [Clostridium botulinum Ba4 str. 657]
          Length = 416

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 74/332 (22%), Positives = 125/332 (37%), Gaps = 60/332 (18%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
               L+RP+ LE+F GQ    S  K      K   +++ + +F GPPG GKTTLA ++A 
Sbjct: 3   PLADLMRPKKLEDFVGQKHILSENKPLYNLMK--NKSICNSIFYGPPGTGKTTLANIMAN 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED-----RDVLFIDEIHRLSIIVEEILYPAMED 131
            +   F   +    A   D+  + +++         VL+IDE+   +   ++ L   +ED
Sbjct: 61  YVDKKFYRLNA-TTASIKDIQEITSSINSLLNYSGVVLYIDELQHFTKKQQQALLEFIED 119

Query: 132 FQLDLM--VGEGPSARSVKINLSRF--TLIAATTRVGLLT------NPLQDRFGIPIRLN 181
            ++ L+    E P     K  LSR          R  ++       N L D+ GI I+  
Sbjct: 120 GRVILIASTTENPYFVIHKAILSRCNIFQFKPLNREDIILGLEKAINKLIDK-GINIKYT 178

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           F  +E +  I Q                       G  R A  +L    +     + +  
Sbjct: 179 FESLEYIGEICQ-----------------------GDYRKAYNILELAVNSRCGFNIEIT 215

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
              I   A   +  D  G +  +   L+   ++  G            S+   A+  L  
Sbjct: 216 LDYIESLAQSNIRADATGDEYYN--ILSAFQKSIRG------------SDADAAVHYLAR 261

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
             +I+ G I  T   R L  +A + +G+  P+
Sbjct: 262 --LIKSGDI--TSITRRLSVMAAEDIGLAYPN 289


>gi|171315515|ref|ZP_02904751.1| AAA ATPase central domain protein [Burkholderia ambifaria MEX-5]
 gi|171099352|gb|EDT44090.1| AAA ATPase central domain protein [Burkholderia ambifaria MEX-5]
          Length = 384

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 63/284 (22%), Positives = 101/284 (35%), Gaps = 48/284 (16%)

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDE 113
           GPPG+GKTTLA++ A      F + S  V+    D+   +   +D         +LF+DE
Sbjct: 2   GPPGVGKTTLARLTALAFDCEFIALSA-VLGGVKDIRESMEQAKDTLNRTGRHTILFVDE 60

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           IHR +   ++ L P +E   +  +    E PS       LSR  +    +        L 
Sbjct: 61  IHRFNKGQQDALLPFVESGLVTFIGATTENPSFEVNSALLSRAQVYVLQSLNDDEMRQLL 120

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R                        L GLA  D+A   +   + G  R    LL + + 
Sbjct: 121 KRAQEIA-------------------LDGLAFDDKAVDTLIGYADGDARRFLNLLEQAQT 161

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
            A  +   TI  +   +A+   A                  R   GG    + ISA    
Sbjct: 162 AASSSRITTIDADFVSSAMTLNA-----------------RRFDKGGDNFYDQISALHKS 204

Query: 292 PRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            R +  D    +  +       P+   R ++ +AW+ +G+  P 
Sbjct: 205 VRGSSPDGALYWFCRMIDGGADPKYLARRIVRMAWEDIGLADPR 248


>gi|182439821|ref|YP_001827540.1| recombination factor protein RarA [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|178468337|dbj|BAG22857.1| putative ATP/GTP-binding protein [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 459

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 81/355 (22%), Positives = 126/355 (35%), Gaps = 62/355 (17%)

Query: 2   MDREGLLSRNVSQEDADIS------LLRPRTLEEFTGQVEAC---SNLKVFIEAAKARAE 52
           M+ +   +    +++ D S       +RPR L+E  GQ       S L+  +        
Sbjct: 1   MEPDLFTAAAEDRQEKDPSSSPLAVRMRPRVLDEVVGQQHLLKPGSPLRRLVGEGGGGPA 60

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------ED 105
               V+  GPPG GKTTLA VV++     F   S  + A   ++ A++ +          
Sbjct: 61  GASSVILWGPPGTGKTTLAYVVSKATNKRFVELSA-ITAGVKEVRAVIESARRATGGFGK 119

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRV 163
             VLF+DEIHR S   ++ L PA+E+  + L+    E P    +   LSR  L+   +  
Sbjct: 120 ETVLFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYFSIISPLLSRSLLLTLESLT 179

Query: 164 GLLTNPLQDR---FGIPIRLNFYEIEDLKTIVQRGAKLT-GLAVTDEAACEIAMRSRGTP 219
                 L  R    G  +       ED +  + R A      A+T   A   A  + G  
Sbjct: 180 DDDLRALLRRTLTDGRGLGGAVALPEDAEAHLLRIAGGDARRALTALEAAAGAAIATGAA 239

Query: 220 RIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGP 279
            I    L    D A V                    D+ G    D+   + + ++  G  
Sbjct: 240 EITLETLEATVDRAAVK------------------YDRDGDQHYDVA--SALIKSIRGSD 279

Query: 280 VGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           V                 D    Y+ +       PR   R LM  A + +G+  P
Sbjct: 280 V-----------------DAALHYLARMIEAGEDPRFIARRLMISASEDIGLADP 317


>gi|324990429|gb|EGC22367.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
           SK353]
          Length = 422

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 66/326 (20%), Positives = 121/326 (37%), Gaps = 42/326 (12%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            +     +RP  +++  GQ     + K+     +A    L  ++  GPPG+GKT++A  +
Sbjct: 2   PENLALRMRPTDIDQIIGQQHLVGSGKIIRRMVEA--NRLSSIILYGPPGIGKTSIASAI 59

Query: 75  ARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           A      FR+ +  V +K      A         VL +DEIHRL    ++ L P +E   
Sbjct: 60  AGTTKFAFRTFNATVDSKKRLQEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGL 119

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + ++    E P         SR  +            PL +            I+     
Sbjct: 120 VIMIGATTENPFFSVTPAIRSRVQIFEL--------EPLSNDDIRTA------IQLALKD 165

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA--EVAHAKTITREIADAA 249
            +RG     + + DEA   I + + G  R A   L         +    + IT ++ + +
Sbjct: 166 KERGFD-FPVELDDEALDFIGISTNGDLRSAYNSLDLAVLSTPEDDKGIRHITLDVMENS 224

Query: 250 LLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           L +    +DK G    D+  L+ + ++  G  V              ++       +++ 
Sbjct: 225 LQKSYITMDKDGDGHYDV--LSALQKSIRGSDV------------NASLHYAAR--LVEA 268

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
           G +      R L  IA++ +G+  P 
Sbjct: 269 GDLP--SLARRLTVIAYEDIGLANPD 292


>gi|170756647|ref|YP_001782185.1| recombination factor protein RarA [Clostridium botulinum B1 str.
           Okra]
 gi|169121859|gb|ACA45695.1| ATPase, AAA family [Clostridium botulinum B1 str. Okra]
          Length = 416

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 74/332 (22%), Positives = 126/332 (37%), Gaps = 60/332 (18%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
               L+RP+ LE+F GQ    S  K      K   +++ + +F GPPG GKTTLA ++A 
Sbjct: 3   PLADLMRPKKLEDFVGQKHILSENKPLYNLMK--NKSICNSIFYGPPGTGKTTLANIMAN 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED-----RDVLFIDEIHRLSIIVEEILYPAMED 131
            +   F   +    A   D+  + +++         VL+IDE+   +   ++ L   +ED
Sbjct: 61  YVDKKFYRLNA-TTASIKDIQEITSSINSLLNYSGVVLYIDELQHFTKKQQQALLEFIED 119

Query: 132 FQLDLM--VGEGPSARSVKINLSRF--TLIAATTRVGLLT------NPLQDRFGIPIRLN 181
            ++ L+    E P     K  LSR          R  ++       N L D+ GI I+ +
Sbjct: 120 GRVILIASTTENPYFVIHKAILSRCNIFQFKPLNREDIILGLEKAINKLIDK-GINIKYS 178

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           F  +E +  I Q                       G  R A  +L    +     + +  
Sbjct: 179 FESLEYIGEICQ-----------------------GDYRKAYNILELAVNSHCGFNIEIT 215

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
              I   A   +  D  G +  +   L+   ++  G            S+   A+  L  
Sbjct: 216 LDYIESLAQSNIRADATGDEYYN--ILSAFQKSIRG------------SDADAAVHYLAR 261

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
             +I+ G I  T   R L  +A + +G+  P+
Sbjct: 262 --LIKSGDI--TSITRRLSVMAAEDIGLSYPN 289


>gi|329667375|gb|AEB93323.1| recombination factor protein [Lactobacillus johnsonii DPC 6026]
          Length = 420

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 76/321 (23%), Positives = 124/321 (38%), Gaps = 43/321 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
               L+RP+ L +F GQ +  S  K   +  K        +L  GPPG GKT+LAQ++AR
Sbjct: 6   PLADLIRPKNLSQFVGQTKLISEGKPLYQIIKNHVPI--SLLLWGPPGTGKTSLAQIIAR 63

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           E      + +  V  KA  +  + T      VL IDEIHR++  +++ L P +E+ Q+ L
Sbjct: 64  EYDYPLATFNASVDNKAKLMQIINTYPYQSFVLLIDEIHRMTTTLQDYLLPYLENGQILL 123

Query: 137 M--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           +    E P    V    SR  +            PL D+            E L   ++ 
Sbjct: 124 IGATTENPIMSIVPAVRSRCQIFEF--------EPLDDKDI---------SEVLVRALKE 166

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL-LRL 253
              L    +  EA   IA  + G  R+A  LL  +     V   +   + + +       
Sbjct: 167 VFHLDEKQIDKEAINIIARSADGDLRVALNLLETIH---AVNGEEISVKNVKEFVKGQHF 223

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
           A D+      D  YL   + +  G     +T +A                +++ G +   
Sbjct: 224 AYDRKATKHYD--YLAAYSDSMAGS----DTDAAL----------YYLTVLLKNGDLPSV 267

Query: 314 PRGRLLMPIAWQHLGIDIPHR 334
              R L  I + ++G+  P +
Sbjct: 268 V--RRLREIPYTYVGLANPEQ 286


>gi|269213974|ref|ZP_06158287.1| replication-associated recombination protein A [Neisseria cinerea
           ATCC 14685]
 gi|269144864|gb|EEZ71282.1| replication-associated recombination protein A [Neisseria cinerea
           ATCC 14685]
          Length = 387

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 59/287 (20%), Positives = 95/287 (33%), Gaps = 46/287 (16%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLF 110
           +L  GPPG+GKTTLA+++A+     F   S  V +   D+   +   E         +LF
Sbjct: 1   MLLWGPPGVGKTTLARILAQSFNAQFLPVSA-VFSGVKDIREAIDKAEIALQQGRATILF 59

Query: 111 IDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +DE+HR +   ++   P +E   L  +    E PS       LSR  +    +       
Sbjct: 60  VDEVHRFNKAQQDAFLPHVESGLLTFIGATTENPSFEVNPALLSRAQVYVLQSLSSDDLK 119

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            L  +         + IE         A+   +   D  A  +                 
Sbjct: 120 KLIAKVLALPEYQDFTIEA-------DAQELLVNTADGDARRLLNLLEQL---------- 162

Query: 229 VRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAG 288
               A+    KT+T E    +L                    I R   GG      ISA 
Sbjct: 163 -LRAADTRRLKTLTAEFLADSLGAQ-----------------IRRFDKGGESFYNQISAL 204

Query: 289 LSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
               R +  +    +          PR   R ++ +AW+ +G+  P 
Sbjct: 205 HKSVRGSHPNSALYWFCCMLDGGTDPRYLARRIVRMAWEDIGLADPR 251


>gi|168180541|ref|ZP_02615205.1| ATPase, AAA family [Clostridium botulinum NCTC 2916]
 gi|182668511|gb|EDT80490.1| ATPase, AAA family [Clostridium botulinum NCTC 2916]
          Length = 416

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 74/332 (22%), Positives = 125/332 (37%), Gaps = 60/332 (18%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
               L+RP+ LE+F GQ    S  K      K   +++ + +F GPPG GKTTLA ++A 
Sbjct: 3   PLADLMRPKKLEDFVGQKHILSENKPLYNLMK--NKSICNSIFYGPPGTGKTTLANIMAN 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED-----RDVLFIDEIHRLSIIVEEILYPAMED 131
            +   F   +    A   D+  + +++         VL+IDE+   +   ++ L   +ED
Sbjct: 61  YVDKKFYRLNA-TTASIKDIQEITSSINSLLNYSGVVLYIDELQHFTKKQQQALLEFIED 119

Query: 132 FQLDLM--VGEGPSARSVKINLSRF--TLIAATTRVGLLT------NPLQDRFGIPIRLN 181
            ++ L+    E P     K  LSR          R  ++       N L D+ GI I+  
Sbjct: 120 GRVILIASTTENPYFVIHKAILSRCNIFQFKPLNREDIILGLEKAINKLIDK-GINIKYT 178

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           F  +E +  I Q                       G  R A  +L    +     + +  
Sbjct: 179 FESLEYISEICQ-----------------------GDYRKAYNILELAVNSHCGFNIEIN 215

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
              I   A   +  D  G +  +   L+   ++  G            S+   A+  L  
Sbjct: 216 LDYIESLAQSNIRADATGDEYYN--ILSAFQKSIRG------------SDADAAVHYLAR 261

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
             +I+ G I  T   R L  +A + +G+  P+
Sbjct: 262 --LIKSGDI--TSITRRLSVMAAEDIGLAYPN 289


>gi|218295885|ref|ZP_03496665.1| AAA ATPase central domain protein [Thermus aquaticus Y51MC23]
 gi|218243623|gb|EED10151.1| AAA ATPase central domain protein [Thermus aquaticus Y51MC23]
          Length = 419

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 79/325 (24%), Positives = 117/325 (36%), Gaps = 53/325 (16%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +     LRPRTL+E  GQ        +     +A+   L  ++  GPPG GKTTLA ++A
Sbjct: 2   EPLAERLRPRTLDEVLGQPHLTGERGLLRRMLEAK--RLASMVLFGPPGTGKTTLAHLLA 59

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
              G  F   S  V A   ++   +         VLF+DEIHR +   ++ L P +E   
Sbjct: 60  EGAGKPFLRLSA-VEAGLKEVRQAVERARQEGGLVLFLDEIHRFNKAQQDALLPHLESGL 118

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           L L+    E P+        SR  L            PL     + +     E       
Sbjct: 119 LTLIGATAENPAFLLTPALRSRLRLFPLR--------PLSQEDLLALLRRALEDPR---- 166

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL- 250
                 L G+A  +EA   +A  + G  R A   L     F        +  +    AL 
Sbjct: 167 -----GLPGVAYEEEALRLLAQAAEGDARFALNTLELAAAF------GKVDLKSVREALG 215

Query: 251 -LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
             RL +D+ G    DL                   +SA     R +  D    Y+ +   
Sbjct: 216 AERLGMDREGDRFYDL-------------------VSALHKSLRGSHVDAALYYLARLLE 256

Query: 310 IQRTPR--GRLLMPIAWQHLGIDIP 332
               PR   R L+ +A + +G+  P
Sbjct: 257 GGADPRYLARRLIRVALEDVGLADP 281


>gi|241948511|ref|XP_002416978.1| DNA-dependent ATPase (MGS1), putative; homolog of human Werner
           helicase interacting protein (WHIP), putative [Candida
           dubliniensis CD36]
 gi|223640316|emb|CAX44566.1| DNA-dependent ATPase (MGS1), putative [Candida dubliniensis CD36]
          Length = 677

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 70/334 (20%), Positives = 128/334 (38%), Gaps = 39/334 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP++L++F GQ +            +A  + +   L  G PG+GKT+LA+++A+
Sbjct: 166 PLAHRLRPKSLDDFFGQEKLVGKNGALRNIIQA--DIIPSFLLWGVPGIGKTSLARIIAK 223

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAM 129
                F   SG + + A  L  +    E        R +LF+DEIHR +  V+++L P +
Sbjct: 224 TTSCKFVELSG-IDSNAKRLKEVFVQAENHKNLSGQRTILFLDEIHRFNKAVQDLLLPVI 282

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ-DRFGIPIRLNFYEIE 186
           E   L ++    E PS       LSR            +  PL  D     +    +E+ 
Sbjct: 283 EKGTLTVIGATTENPSFNLNNALLSRMHT--------FVMEPLNVDSLIKILTRALFEVN 334

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
            ++  +     L  +++  +A   IA    G  R+A  +L  +  +      K       
Sbjct: 335 RVRKNL---YGLHYISLQKDAYHYIAELCMGDSRVALNILETINAYLSAEKFKNTDSTDD 391

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFG-------GGPVGIETISAGLSEPRDAIEDL 299
           +         K G  ++    L  + ++          G    + ISA     R +  + 
Sbjct: 392 EQT------KKQGVIKVSADLLKPLMKSRDFHQFYDRNGDSHYDIISAFHKSVRGSDPNA 445

Query: 300 IEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
              Y+++       P    R ++ IA + +G+  
Sbjct: 446 AMFYLVKMLSGGEDPLFIMRRMIVIASEDIGLRD 479


>gi|295425092|ref|ZP_06817797.1| AAA family ATPase [Lactobacillus amylolyticus DSM 11664]
 gi|295065151|gb|EFG56054.1| AAA family ATPase [Lactobacillus amylolyticus DSM 11664]
          Length = 438

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 60/320 (18%), Positives = 109/320 (34%), Gaps = 29/320 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+ L+E  GQ       K+     +A+   L  ++  GPPG+GKT++A  +A 
Sbjct: 3   PLAYRMRPQNLDEVVGQQHLIGPGKIIRRMVEAK--LLSSMILYGPPGIGKTSIASAIAG 60

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR  +    +K      A    +    +L +DEIHRL    ++ L P +E  Q+ 
Sbjct: 61  STKYAFRKLNAATDSKKQLQQVAEEGKMSGTVILLLDEIHRLDKTKQDFLLPLLESGQI- 119

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           +++G       + I                 +  ++ R  I   L     +D    +QR 
Sbjct: 120 ILIGATTENPYIAI-----------------SPAIRSRCQI-FELKPLSEDDADKAIQRA 161

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255
                  +            +         LR   +  E+A   T  ++    A      
Sbjct: 162 LHDQENGLGKYNVTLTKDAEKLLIEKGNGDLRTTLNGLELAVLST--KQELQEAGKENQY 219

Query: 256 DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ---GFIQR 312
             +   ++              G    + +SA     R +  D    Y+ +    G +  
Sbjct: 220 FTINQQEMANSIQMKSQNFDASGDGHYDLVSAFQKSIRGSDVDASLHYLARLIDSGDLIS 279

Query: 313 TPRGRLLMPIAWQHLGIDIP 332
               R L  IA++ +G+  P
Sbjct: 280 IC--RRLSVIAYEDIGLANP 297


>gi|158424151|ref|YP_001525443.1| recombination factor protein RarA [Azorhizobium caulinodans ORS
           571]
 gi|158331040|dbj|BAF88525.1| AAA ATPase [Azorhizobium caulinodans ORS 571]
          Length = 469

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 71/346 (20%), Positives = 117/346 (33%), Gaps = 60/346 (17%)

Query: 4   REGLLSRNVSQEDAD---ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           R  L++ ++ +E A      +LRP+ LE+  GQ              K   + L   +  
Sbjct: 31  RRHLMTLSLFEEAAPRPLAEVLRPQRLEDVIGQEHLLGPEGPIGRMVK--GKRLSSFILW 88

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDE 113
           GPPG GKTT+A++VAR LG  F   S  V++   DL  ++            +  +F+DE
Sbjct: 89  GPPGSGKTTIARLVARGLGFEFVQLSA-VLSGVADLRKVVETARQLRTGSGRQTAVFVDE 147

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           +HR +   ++ L P +ED  + L+    E PS   V   LSR  +             L 
Sbjct: 148 LHRFNRTTQDALLPHVEDGTIVLIGATTENPSFSMVAALLSRAKVYTLRRLEKADLARLL 207

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
           +R               +    R      L +  +A   +   + G  R    L   V +
Sbjct: 208 ER--------------AEAHAGR-----CLPLDAQAREALTEMADGDGRYLLGL---VEE 245

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAG--- 288
              +     +  E     + + A       +     L+   ++  G  V      A    
Sbjct: 246 LLALPPGPDLDLEALAQTVQKRAPVYDKAQEEHYNLLSCFHKSLRGSDVNAAMYWAARMM 305

Query: 289 -LSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
              E    I                    R L   A + +G+  P 
Sbjct: 306 TGGEDPGTIF-------------------RRLACCASEDVGMADPQ 332


>gi|242279432|ref|YP_002991561.1| recombination factor protein RarA [Desulfovibrio salexigens DSM
           2638]
 gi|242122326|gb|ACS80022.1| AAA ATPase central domain protein [Desulfovibrio salexigens DSM
           2638]
          Length = 420

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 72/331 (21%), Positives = 123/331 (37%), Gaps = 65/331 (19%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
            ++        +RP+ ++EF GQ      ++ F      R++ L  +L  GPPG GK+TL
Sbjct: 4   ELTDNQPLADRIRPKKIDEFFGQNHIRERVEAF-----ERSKRLPSLLLFGPPGCGKSTL 58

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           A ++A+  G +F   S P       + AL   L   D+L +DE+HR S   ++   P +E
Sbjct: 59  AMLLAKSTGRHFMRISAPESG----ITALRKQLAGMDILILDELHRFSKAQQDFFLPILE 114

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
             ++ L+    E PS    +  LSR  ++   +                         DL
Sbjct: 115 SGEITLLATTTENPSFSVTRQLLSRLHVLRLRSLGKT---------------------DL 153

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             I  R  +   + +++++   I   + G  R    LL                R+I   
Sbjct: 154 LAICNRACEELEIELSEDSLNLITSMAGGDGRSLLNLLEYTSQLPAEKREAENLRKILPE 213

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY---MI 305
            ++R   D+ G    +L                    SA +   R +  D    Y   +I
Sbjct: 214 TVIR--GDRDGDSHYELA-------------------SALIKSIRGSDPDAALYYLGCLI 252

Query: 306 QQG----FIQRTPRGRLLMPIAWQHLGIDIP 332
           + G    FI      R L+  A + +G+  P
Sbjct: 253 ESGEDPKFIT-----RRLIISAGEDIGLADP 278


>gi|262038640|ref|ZP_06012008.1| replication-associated recombination protein A [Leptotrichia
           goodfellowii F0264]
 gi|261747346|gb|EEY34817.1| replication-associated recombination protein A [Leptotrichia
           goodfellowii F0264]
          Length = 408

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 66/339 (19%), Positives = 114/339 (33%), Gaps = 59/339 (17%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            L      ++       RPRTLE+F GQ +      V  +  +       + +F G PG 
Sbjct: 2   NLFENLYDEKKPLAFRYRPRTLEDFYGQEKIVGEKGVLRKIIEK--GTFMNSIFWGSPGT 59

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLS 118
           GKTTLA+++A  +  N+   +  + +   D+  L    +        + +LF DEIHR +
Sbjct: 60  GKTTLAEIIANRMNYNYEYLNA-IKSSVSDIKELSERAKRIFGIEGRQTLLFFDEIHRFN 118

Query: 119 IIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
            + ++ L   +E+  + L+    E P        LSR                      +
Sbjct: 119 KLQQDSLLQDLENGNIILIGATTENPYYSLNNALLSRC---------------------M 157

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
                    EDL  I++          ++E    I+    G  R A  +L  +       
Sbjct: 158 AFEFKKLNKEDLFKILKNINDKEKFDFSEEILEYISEIIEGDARQAINVLELLS-----N 212

Query: 237 HAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAI 296
                T E     L          D+ D                   TISA +   R + 
Sbjct: 213 TGVNFTLEEVKEVLNTKKSYHKTEDKYD-------------------TISAMIKSIRGSD 253

Query: 297 EDLIEPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
            D    ++ +       P    R L+ ++ + +G+  P 
Sbjct: 254 PDAAVYWIAKMLSGGEDPMYLARRLVILSSEDIGLANPQ 292


>gi|227889971|ref|ZP_04007776.1| crossover junction endodeoxyribonuclease [Lactobacillus johnsonii
           ATCC 33200]
 gi|227849415|gb|EEJ59501.1| crossover junction endodeoxyribonuclease [Lactobacillus johnsonii
           ATCC 33200]
          Length = 426

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 74/326 (22%), Positives = 126/326 (38%), Gaps = 53/326 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
               L+RP+ L +F GQ +  S  K   +  K        +L  GPPG GKT+LAQ++AR
Sbjct: 6   PLADLIRPKNLSQFVGQTKLISEGKPLYQIIKNHVPI--SLLLWGPPGTGKTSLAQIIAR 63

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           E      + +  +  KA  +  + T      VL IDEIHR++  +++ L P +E  ++ L
Sbjct: 64  EYDYPLATFNASIDNKAKLMQIINTYPYQSFVLLIDEIHRMTTTLQDYLLPYLESGKILL 123

Query: 137 M--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           +    E P    V    SR  +    T                      + +D+  ++ R
Sbjct: 124 IGATTENPIMSIVPAVRSRCQIFEFET---------------------LDDKDISEVLVR 162

Query: 195 GAK----LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
             K    L    +  EA   IA  + G  R+A  LL  +    +  + + I+ +     L
Sbjct: 163 ALKEVFHLDEKQIDKEAINIIARSADGDLRVALNLLETI----QAVNGEEISVKNVKEFL 218

Query: 251 --LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
                A D+      D  YL   + +  G     +T +A                +++ G
Sbjct: 219 KGQHFAYDRKATKHYD--YLAAYSDSMAGS----DTDAAL----------YYLTVLLKNG 262

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIPHR 334
            +      R L  I + ++G+  P +
Sbjct: 263 DLPSVV--RRLREIPYTYVGLANPEQ 286


>gi|103487637|ref|YP_617198.1| recombination factor protein RarA [Sphingopyxis alaskensis RB2256]
 gi|98977714|gb|ABF53865.1| Recombination protein MgsA [Sphingopyxis alaskensis RB2256]
          Length = 439

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 70/329 (21%), Positives = 107/329 (32%), Gaps = 56/329 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRPR+L E  GQ               A    L  ++  GPPG GKTT+A+++A 
Sbjct: 23  PLAERLRPRSLAEVVGQEHLTGTDGAIGRMVAAGQ--LSSIILWGPPGTGKTTIARLLAE 80

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130
            + + F + S  V +   DL     + E       R +LF+DEIHR +   ++   P +E
Sbjct: 81  AVKMRFAALSA-VFSGVADLRQAFADAEKMAATGKRTLLFVDEIHRFNRAQQDGFLPYVE 139

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
              + L+    E PS       LSR  ++            L DR          E E  
Sbjct: 140 RGTVVLVGATTENPSFALNAALLSRAQVLVLNRLGDAALETLIDRA---------EAE-- 188

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
                   +   +     AA      + G  R    LL +V     V     +       
Sbjct: 189 ------TGRALPVTTEARAAL--VASADGDGRF---LLNQVETLFSVTLDAPLDPAELAQ 237

Query: 249 ALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
            L R     D+      +L                   ISA     R +       ++ +
Sbjct: 238 FLHRRMPVYDRDRDGHYNL-------------------ISALHKAVRGSDPQAALYWLAR 278

Query: 307 QGFIQRTPRG--RLLMPIAWQHLGIDIPH 333
                  P    R L  +A + +G+  P 
Sbjct: 279 MLVAGEEPLYVLRRLTRLASEDIGLADPQ 307


>gi|229822983|ref|ZP_04449053.1| hypothetical protein GCWU000282_00275 [Catonella morbi ATCC 51271]
 gi|229787796|gb|EEP23910.1| hypothetical protein GCWU000282_00275 [Catonella morbi ATCC 51271]
          Length = 424

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 72/330 (21%), Positives = 119/330 (36%), Gaps = 55/330 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RPR LE+  GQ       K+     +A+   L  ++  GPPG+GKT++A  +A 
Sbjct: 4   PLAYRMRPRQLEDILGQEHLVGPGKIIHRMVQAK--RLTSMILYGPPGIGKTSIASAIAG 61

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
                FR+ +     K  +L  ++   +     +L +DEIHRL+   ++ L P +E  ++
Sbjct: 62  STRYAFRTLNAATDGK-KELEQVVEEAKFSGTLILLLDEIHRLNTTKQDFLLPHLESGRI 120

Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGL-----LTNPLQDRFGIPIRLNFYEIED 187
            L+    E P         SR  +              LT  L D+              
Sbjct: 121 ILIGATTENPYIAINPAIRSRVQIFELKPLSPEQVCLGLTRALADQ-------------- 166

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
                + G     + V D      A  S G  R +   L       E      I  ++A 
Sbjct: 167 -----EHGLGKYPVQVQDGVLEHFAQVSGGDIRTSLNALELAVLSTEPDQDGQIIIDMAV 221

Query: 248 AA----LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           A+      RL  DK G    D+  ++ + ++  G  V                 D    Y
Sbjct: 222 ASDCLRRRRLQHDKNGDAHYDV--ISALQKSIRGSDV-----------------DAALYY 262

Query: 304 M-IQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           + I     + T   R L+ IA++ +G+  P
Sbjct: 263 LAILLTAGELTVACRRLLVIAYEDIGLGHP 292


>gi|330860580|emb|CBX70879.1| hypothetical protein YEW_DI14130 [Yersinia enterocolitica W22703]
          Length = 208

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 45/165 (27%), Positives = 72/165 (43%), Gaps = 11/165 (6%)

Query: 8   LSRNVSQED--ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           +S + SQ +     + +RP TLE++ GQ    +  K    A  A    L  ++  GPPG 
Sbjct: 1   MSLDFSQNEFQPLAARMRPLTLEQYIGQQHLLAPGKPLPRAIVAGQ--LHSMILWGPPGT 58

Query: 66  GKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GKTTLA+++ R    +    S        I +A + A    +   R +LF+DE+HR +  
Sbjct: 59  GKTTLAEIIGRYGQADVERISAVTSGIKEIREAIERARQNRDAGRRTILFVDEVHRFNKS 118

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRV 163
            ++   P +ED  +  +    E PS       LSR  +       
Sbjct: 119 QQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKALT 163


>gi|298694907|gb|ADI98129.1| probable ATPase [Staphylococcus aureus subsp. aureus ED133]
 gi|323440819|gb|EGA98528.1| recombination factor protein RarA [Staphylococcus aureus O11]
 gi|323442832|gb|EGB00457.1| recombination factor protein RarA [Staphylococcus aureus O46]
          Length = 415

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 65/320 (20%), Positives = 122/320 (38%), Gaps = 43/320 (13%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ ++E   Q        +       +   L  ++F GPPG+GKT++A+ ++      
Sbjct: 1   MRPKNIDEIISQQHLVGPRGIIRRMVDTK--KLTSMIFYGPPGIGKTSIAKAISGSTQYK 58

Query: 82  FRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137
           FR  +  V     D+  ++   +   + +L +DEIHRL    ++ L P +E+ ++ L+  
Sbjct: 59  FRQLNA-VTNTKKDMQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKIVLIGA 117

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
               P         SR  +            PL D           E E      + G K
Sbjct: 118 TTSNPYHAINPAIRSRAQIFELY--------PLNDEDVRQALTRAIEDE------ENGLK 163

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK--TITREIADAALLRLAI 255
                + ++A    + +S+G  R A   L      A+        +T + A   L + A 
Sbjct: 164 TYQPKIDEDAMTYFSTQSQGDVRSALNALELAVLSADNDKDGYRHVTLQDAKDCLQKGAF 223

Query: 256 --DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
             DK G    D+  ++   ++  G  V              A+  L    +I+ G +   
Sbjct: 224 VSDKDGDMHYDV--MSAFQKSIRGSDV------------NAALHYLAR--LIEAGDLPTI 267

Query: 314 PRGRLLMPIAWQHLGIDIPH 333
              R L+ I+++ +G+  P+
Sbjct: 268 V--RRLLVISYEDIGLASPN 285


>gi|111224626|ref|YP_715420.1| recombination factor protein RarA [Frankia alni ACN14a]
 gi|111152158|emb|CAJ63888.1| putative polynucleotide enzyme with nucleotide triphosphate
           hydrolase domain [Frankia alni ACN14a]
          Length = 534

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 82/340 (24%), Positives = 127/340 (37%), Gaps = 35/340 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + LRP+TL+E  GQ              +        V+  GPPG GKTTLA +V+R
Sbjct: 59  PLAARLRPQTLDEVVGQRHLLGAGSPLRRLVEGGGTT--SVILWGPPGTGKTTLAHIVSR 116

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAM 129
             G  FR  S  V A   D+ A++            R VLFIDE+HR +   ++ L P++
Sbjct: 117 ATGRRFRELSA-VTAGVKDVRAVIDEARAASSASGTRTVLFIDEVHRFTRTQQDALLPSV 175

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFT-----LIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E   + L+    E P    V   LSR        +      G+L   L D  G   R+  
Sbjct: 176 ELGWVTLVAATTENPFFSVVSPLLSRSLLLTLEPLTDDDIRGVLDRALHDPRGYADRVAL 235

Query: 183 YEIEDLKTIV-------QRGAKLTG-LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
              E  + +V       +R   +    A    A       ++    +       + D  E
Sbjct: 236 -TDEAREHVVRLAGGDARRALTVLEAGAEALLADLAAVEAAKSVDPVDPVDPVDLVDLVE 294

Query: 235 VAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRD 294
              A         AALL +A+ +   ++  +RY          G    + ISA +   R 
Sbjct: 295 GVGAADGAGTGRPAALLEVAVLEQAVNRAAVRY-------DRSGDQHYDVISAFIKSMRG 347

Query: 295 AIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
              D    Y+ +       PR   R ++ +A + +G+  P
Sbjct: 348 GDADAALHYLARMLEAGEDPRFIARRMIILASEDVGMADP 387


>gi|332185004|ref|ZP_08386753.1| ATPase associated with various cellular activities family protein
           [Sphingomonas sp. S17]
 gi|332014728|gb|EGI56784.1| ATPase associated with various cellular activities family protein
           [Sphingomonas sp. S17]
          Length = 447

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 71/332 (21%), Positives = 110/332 (33%), Gaps = 62/332 (18%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKAR---AEALDHVLFVGPPGLGKTTLAQV 73
                LRP  LE+  GQ           E A  R   A  L  ++  GPPG GKTT+A++
Sbjct: 22  PLADRLRPERLEDVVGQDHLTGP-----EGAIGRMVAAGRLSSMILWGPPGTGKTTIARL 76

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYP 127
           +A E+G+ F + S  V +   DL  +            R +LF+DEIHR +   ++   P
Sbjct: 77  LAAEVGLRFAAISA-VFSGVADLKKVFAEARDHARAGQRTLLFVDEIHRFNRAQQDGFLP 135

Query: 128 AMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
            +ED  + L+    E PS       LSR  ++                       +    
Sbjct: 136 FVEDGTVTLVGATTENPSFELNAALLSRAQVLIL---------------------HRLGQ 174

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
             L  ++ R        +  + A   A+ +         LL +      V   + +    
Sbjct: 175 SALDQLLTRAEAEMERPLPLQPAARDALIASADGD-GRFLLNQAETLFSVDLPEPLDAAG 233

Query: 246 ADAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
             A L R     DK      +L                   ISA     R +       Y
Sbjct: 234 LSALLQRRVAVYDKDREGHYNL-------------------ISALHKSIRGSDPQAALYY 274

Query: 304 MIQQGFIQRTPRG--RLLMPIAWQHLGIDIPH 333
           + +       P    R L   A + +G+  P 
Sbjct: 275 LARMLTAGEEPLYLLRRLTRAAIEDIGLADPQ 306


>gi|116670830|ref|YP_831763.1| recombination factor protein RarA [Arthrobacter sp. FB24]
 gi|116610939|gb|ABK03663.1| Recombination protein MgsA [Arthrobacter sp. FB24]
          Length = 474

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 73/349 (20%), Positives = 118/349 (33%), Gaps = 55/349 (15%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIE------AAKARAEALDHVLF 59
           GL +            +RPRTL++  GQ           +      A  A       ++ 
Sbjct: 27  GLAAGRTQPRSPLAVRMRPRTLDDVVGQQHLLGQGSPLRQLAAGAGADSAGPAGPTSLIL 86

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFID 112
            GPPG GKTTLA V+A+  G  F   S  + A   D+  ++ +        +   VLF+D
Sbjct: 87  WGPPGTGKTTLAHVIAKGPGRKFVELSA-ITAGVKDVRRVMDDALTARDLYKTTTVLFLD 145

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           EIHR +   ++ L P +E+  + L+    E PS   V            +  + L   PL
Sbjct: 146 EIHRFNKAQQDALLPGVENRWVVLVAATTENPSFSVVSP--------LLSRSLLLTLRPL 197

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAK-----LTGLAVTDEAACEIAMRSRGTPRIAGRL 225
            D              D++ +VQR           + +++EA   +   S G  R A   
Sbjct: 198 TD-------------ADIEGLVQRAVADPRGLNGKVQLSEEALAHLVRLSGGDARRALTA 244

Query: 226 LRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETI 285
           L      A           +                  +        R    G    +  
Sbjct: 245 LEAAAGVAFGDADDADDGPVTVE-----------LRHTERALDVAAVRYDRAGDQHYDVA 293

Query: 286 SAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           SA +   R +  D    Y+ +       PR   R ++  A + +G+  P
Sbjct: 294 SAFIKSIRGSDVDAALHYLARMLEAGEDPRFIARRIVISAAEDVGMADP 342


>gi|328794225|ref|XP_001122490.2| PREDICTED: uncharacterized AAA domain-containing protein YrvN-like,
           partial [Apis mellifera]
          Length = 318

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 70/322 (21%), Positives = 124/322 (38%), Gaps = 48/322 (14%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+T+ E  GQ    S  ++     KA+   L  ++  GPPG GKT++A+ ++   G++
Sbjct: 9   MRPKTVNEVVGQQHLLSEGRIINRMIKAK--RLTSMILYGPPGTGKTSIAKALSGTTGLS 66

Query: 82  FRSTSGPVIAKAG--DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137
           F   +     K     L+      +   ++F+DEIHRL+   ++ L P +ED    ++  
Sbjct: 67  FEYFNAVKDDKKKLTILSQQARVTQSSIIIFLDEIHRLNKDKQDFLLPFIEDGTFIVIGA 126

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
             E P         SR  +            PL+    +         E        G +
Sbjct: 127 TTENPYINVTPAIRSRCQIFEV--------KPLKPEDIVIAINRALTSEQ-------GLR 171

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT-ITREIADAALLRLAI- 255
              + ++D+    ++  + G  R     L          + KT ITREI +  + + ++ 
Sbjct: 172 EYNVEISDDDKMWLSGSTDGDLRSVLNALELAVLSTPKENDKTVITREILEECIQKKSMS 231

Query: 256 -DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM---IQQGFIQ 311
            DK G    D                   TISA     R +  D    Y+   ++ G + 
Sbjct: 232 GDKNGDSHYD-------------------TISAFQKSIRGSDADAALHYLARILEAGDLN 272

Query: 312 RTPRGRLLMPIAWQHLGIDIPH 333
                R L+ IA++ +G+  P 
Sbjct: 273 IAM--RRLLVIAFEDIGLANPQ 292


>gi|315225697|ref|ZP_07867504.1| replication-associated recombination protein A [Capnocytophaga
           ochracea F0287]
 gi|314944360|gb|EFS96402.1| replication-associated recombination protein A [Capnocytophaga
           ochracea F0287]
          Length = 426

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 58/330 (17%), Positives = 109/330 (33%), Gaps = 53/330 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP +L ++ GQ           +  +     L   +F GPPG GKTTLA ++A 
Sbjct: 4   PLAERMRPTSLAQYVGQEHLVGAQGALRQQIER--GLLPSFIFWGPPGTGKTTLANIIAH 61

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE--------DRDVLFIDEIHRLSIIVEEILYPA 128
           +    F + S  + +   ++  ++   +           ++FIDEIHR +   ++ L  A
Sbjct: 62  QSNRAFYTLSA-ISSGIKEVREVIDQSKQSGGLFTTQNPIVFIDEIHRFNKTQQDSLLQA 120

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           +E   + L+    E PS   +   LSR  +             L                
Sbjct: 121 VEKGWITLIGATTENPSFEVIPALLSRCQVYILNAFERKDLEQL---------------- 164

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
            L   + + A L    +  +    +   S G  R        + +         IT +  
Sbjct: 165 -LHNAITQDAILKTKNIELQETEALLRLSGGDGRKLLNTFELIVNATPEGEPVVITNDSV 223

Query: 247 DAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
              + +     DK G    D+                   ISA +   R +  +    ++
Sbjct: 224 LRLVQKNTVLYDKTGEQHYDI-------------------ISAFIKSIRGSDPNGAVYWL 264

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
            +        +   R ++ +A + +G   P
Sbjct: 265 ARMIEGGEDVKFIARRMLILASEDIGNANP 294


>gi|326773290|ref|ZP_08232573.1| ATPase, AAA family [Actinomyces viscosus C505]
 gi|326636520|gb|EGE37423.1| ATPase, AAA family [Actinomyces viscosus C505]
          Length = 467

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 86/345 (24%), Positives = 126/345 (36%), Gaps = 67/345 (19%)

Query: 21  LLRPRTLEEFTGQVEAC---SNLKVFIE---------------AAKARAEALDHVLFVGP 62
            +RPRTL+E  GQ       S L+  +E               AA+  + +L  V+  GP
Sbjct: 25  RMRPRTLDELQGQAHLLTPGSPLRRLVEPAEAGRGSHAGERGAAARPSSSSLSSVILWGP 84

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHR 116
           PG GKTTLA +VAR  G  F   S  V A   D+ A++T+   R       VLFIDE+HR
Sbjct: 85  PGTGKTTLAYLVARGSGRRFVELSA-VTAGVKDVRAVVTDARRRLAAGEETVLFIDEVHR 143

Query: 117 LSIIVEEILYPAMEDFQLDLM--VGEGPSARSV-----KINLSRFTLIAATTRVGLLTNP 169
            S   ++ L P++E+  + L+    E PS   V     +  L     + A     L+   
Sbjct: 144 FSRSQQDALLPSVENRWVTLIAATTENPSFSVVSPLLSRSLLLTLQPLGADDIGRLIDRA 203

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           L D  G+   +     E  + IV R A                     TP  +   L  V
Sbjct: 204 LDDERGLAGTVGI-SEEAREQIV-RMAGSDARKALTVLEAAAGTVLAQTPASSSSPLIEV 261

Query: 230 RDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGL 289
            D    A                +  D+ G    D+                   ISA +
Sbjct: 262 ADVERAADV------------AAVRYDRAGDQHYDV-------------------ISAFI 290

Query: 290 SEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
              R +  D    Y+ +       PR   R ++  A + +G+  P
Sbjct: 291 KSMRGSDPDATMHYLARMIAAGEDPRYIARRIVIHAAEDVGLADP 335


>gi|126662272|ref|ZP_01733271.1| ATPase, AAA family protein [Flavobacteria bacterium BAL38]
 gi|126625651|gb|EAZ96340.1| ATPase, AAA family protein [Flavobacteria bacterium BAL38]
          Length = 428

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 62/329 (18%), Positives = 115/329 (34%), Gaps = 48/329 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+ L ++  Q+          +        +  ++  GPPG GKTTLAQ++A+
Sbjct: 4   PLAERIRPQQLSDYISQLHLVGPEGSLTQQIAK--GLIPSLILWGPPGTGKTTLAQIMAQ 61

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED--------RDVLFIDEIHRLSIIVEEILYPA 128
           E    F   S  + +   D+  ++   +           +LFIDEIHR S   ++ L  A
Sbjct: 62  ESKRPFYQLSA-IHSGVKDIREVIEKAKQSSGLFTAKNPILFIDEIHRFSKSQQDSLLAA 120

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           +E   + L+    E PS   +   LSR  +             L  R  I   ++    +
Sbjct: 121 VEKGWITLIGATTENPSFEVIPALLSRCQVYVLNAFTKDDLEALLHR-AIKTDIHLQNKD 179

Query: 187 DLKTIVQRGAKLTGLAVTD-EAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
                 +   +L+G          E+ + +  T   +  +        EV + K +    
Sbjct: 180 IQLKETEALLRLSGGDGRKLLNIFELVINATDTSTSSASI--------EVTNEKVMQLVQ 231

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
            +  L     DK G    D+                   +SA +   R +  +    ++ 
Sbjct: 232 KNTVL----YDKTGEQHYDI-------------------VSAFIKSIRGSDPNGAVYWLA 268

Query: 306 QQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           +        +   R L+ +A + +G   P
Sbjct: 269 RMIEGGEDVKFIARRLLILASEDIGNANP 297


>gi|325068849|ref|ZP_08127522.1| AAA ATPase central domain protein [Actinomyces oris K20]
          Length = 464

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 85/345 (24%), Positives = 125/345 (36%), Gaps = 67/345 (19%)

Query: 21  LLRPRTLEEFTGQVEAC---SNLKVFIE---------------AAKARAEALDHVLFVGP 62
            +RPRTL+E  GQ       S L+  +E               AA+  + +L  V+  GP
Sbjct: 25  RMRPRTLDELQGQTHLLTPGSPLRRLVEPAEASGGSHAGERGAAARPSSSSLSSVILWGP 84

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHR 116
           PG GKTTLA +VAR  G  F   S  V A   D+ A++++   R       VLFIDE+HR
Sbjct: 85  PGTGKTTLAYLVARGSGRRFVELSA-VTAGVKDVRAVVSDARRRLAAGEETVLFIDEVHR 143

Query: 117 LSIIVEEILYPAMEDFQLDLM--VGEGPSARSV-----KINLSRFTLIAATTRVGLLTNP 169
            S   ++ L P++E+  + L+    E PS   V     +  L     + A     L+   
Sbjct: 144 FSRSQQDALLPSVENRWVTLIAATTENPSFSVVSPLLSRSLLLTLQPLGADDIGRLIDRA 203

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           L D  G+   +     E  + IV R A                     TP      L  V
Sbjct: 204 LDDERGLGGTVGI-SEEAREQIV-RMAGSDARKALTVLEAAAGTVLAQTPASGTSPLIEV 261

Query: 230 RDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGL 289
            D    A                +  D+ G    D+                   ISA +
Sbjct: 262 ADVERAADV------------AAVRYDRAGDQHYDV-------------------ISAFI 290

Query: 290 SEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
              R +  D    Y+ +       PR   R ++  A + +G+  P
Sbjct: 291 KSMRGSDPDATMHYLARMIAAGEDPRYIARRIVIHAAEDVGLADP 335


>gi|323255374|gb|EGA39144.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
          Length = 90

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 42/86 (48%), Positives = 57/86 (66%)

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
            AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED++EPY+IQQ
Sbjct: 3   QALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQ 62

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
           GF+QRTPRGR+    AW H GI  P 
Sbjct: 63  GFLQRTPRGRMATVRAWNHFGITPPE 88


>gi|326336426|ref|ZP_08202596.1| AAA family ATPase [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325691299|gb|EGD33268.1| AAA family ATPase [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 428

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 59/334 (17%), Positives = 108/334 (32%), Gaps = 61/334 (18%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP  L ++  Q              +        ++F GPPG GKTTLA ++A+
Sbjct: 6   PLAERMRPVRLSDYISQSHLVGEGGALRMQIEKGIT--PSLIFWGPPGTGKTTLAYIIAK 63

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED--------RDVLFIDEIHRLSIIVEEILYPA 128
           E    F S S  + +   ++  ++   +           ++FIDEIHR +   ++ L  A
Sbjct: 64  EGQRTFFSLSA-ISSGIKEVRDIIEKSKREQGLFTPKNPIIFIDEIHRFNKTQQDSLLEA 122

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           +E   + L+    E PS   +   LSR  +                        + +  E
Sbjct: 123 VERGWVTLIGATTENPSFEVIPALLSRCQVYTL---------------------HPFTKE 161

Query: 187 DLKTIVQRG-AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           DL  ++ R   +   L        E     R +     +LL                   
Sbjct: 162 DLLALLHRAILEDIQLKNRKINLKETEALLRLSDGDGRKLLNTFELIVNTFSEGEEILIT 221

Query: 246 ADAALLRLA-----IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
            +  L  +       DK+G    D+                   ISA +   R +  +  
Sbjct: 222 NEKVLQIVQQNTVLYDKVGEQHYDI-------------------ISAFIKSIRGSDPNAA 262

Query: 301 EPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
             ++ +        +   R ++ +A + +G   P
Sbjct: 263 VYWLARMIEGGEDVKFIARRMLILASEDIGNANP 296


>gi|149186572|ref|ZP_01864884.1| ATPase [Erythrobacter sp. SD-21]
 gi|148829799|gb|EDL48238.1| ATPase [Erythrobacter sp. SD-21]
          Length = 438

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 74/339 (21%), Positives = 118/339 (34%), Gaps = 60/339 (17%)

Query: 9   SRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKAR---AEALDHVLFVGPPG 64
           +++  +EDA ++  LRP +L E  GQ           E A  R   A  L  ++  GPPG
Sbjct: 14  TKDGVREDAPLADRLRPASLGEVIGQDHLTG-----AEGAIGRMVAAGKLSSMILWGPPG 68

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLS 118
            GKTT+A+++A  +G+ F S S  V +   DL               R +LF+DEIHR +
Sbjct: 69  TGKTTIARLLADSVGMRFESVSA-VFSGVADLKKAFAAADKAAEAGQRTLLFVDEIHRFN 127

Query: 119 IIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
              ++   P +E   + L+    E PS       LSR  ++            L DR   
Sbjct: 128 RAQQDGFLPFVERGTVTLVGATTENPSFALNAALLSRAQVLILQRLDHGALGQLLDRAEG 187

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
                    +    +V                             A    R + + AE+ 
Sbjct: 188 LEGPLPLTTKARDALV---------------------------ASADGDGRFLLNQAEML 220

Query: 237 HAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAI 296
           +   I   +   AL +    ++     D            G       ISA     R + 
Sbjct: 221 YTAKIEEPLDPGALGKFLQRRVAVYDKDRE----------GH---YNLISALHKAVRGSD 267

Query: 297 EDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                 Y+ +       PR   R L+ +A + +G+  P 
Sbjct: 268 VQASLYYLARMLTAGEEPRFLARRLVRMAMEDIGMADPQ 306


>gi|296111080|ref|YP_003621461.1| chromosome segregation helicase (putative) [Leuconostoc kimchii
           IMSNU 11154]
 gi|295832611|gb|ADG40492.1| chromosome segregation helicase (putative) [Leuconostoc kimchii
           IMSNU 11154]
          Length = 428

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 66/328 (20%), Positives = 119/328 (36%), Gaps = 50/328 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP  +E+  GQ       K+      A    L  ++  GPPG GKT++A  +A 
Sbjct: 4   PLAYRMRPTKIEDIVGQTHLVGEGKIIRRMVDA--MRLSSMILYGPPGTGKTSIASAIAG 61

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR  +    ++    + A    +    VL +DEIHRL+ + ++ L P +E   + 
Sbjct: 62  SSKYAFRMLNAATDSQKDLQIVAEEAKMSGTVVLLLDEIHRLNKVKQDFLLPHLESGSI- 120

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV--- 192
           +++G       +                  +T  ++ R  I       E +    IV   
Sbjct: 121 ILIGATTENPYIN-----------------VTPAIRSRTQIFQVNPLTEADIQAAIVRAL 163

Query: 193 ---QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT---ITREIA 246
              + G     + + D A   ++  + G  R A   L       + A+      IT  I 
Sbjct: 164 ADKKNGLGEYNVMLEDNAMSHLSRATNGDLRSALNGLELAVLSTKPANDDNIIHITLPII 223

Query: 247 DAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +  + R A+  DK G    D+  ++ + ++  G  V              A+       +
Sbjct: 224 EETVQRKALSADKNGDAHYDV--ISALQKSIRGSDVDA------------ALHYAAR--I 267

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           I  G +      R L  IA++ +G+  P
Sbjct: 268 IMSGDLA--ILARRLTVIAYEDIGLANP 293


>gi|253732284|ref|ZP_04866449.1| crossover junction endodeoxyribonuclease ATPase [Staphylococcus
           aureus subsp. aureus USA300_TCH959]
 gi|253724073|gb|EES92802.1| crossover junction endodeoxyribonuclease ATPase [Staphylococcus
           aureus subsp. aureus USA300_TCH959]
          Length = 415

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 64/320 (20%), Positives = 122/320 (38%), Gaps = 43/320 (13%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ ++E   Q        +       +   L  ++F GPPG+GKT++A+ ++      
Sbjct: 1   MRPKNIDEIISQQHLVGPKGIIRRMVDTK--KLTSMIFYGPPGIGKTSIAKAISGSTQYK 58

Query: 82  FRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137
           FR  +  V     D+  ++   +   + +L +DEIHRL    ++ L P +E+ ++ L+  
Sbjct: 59  FRQLNA-VTNTKKDMQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKIVLIGA 117

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
               P         SR  +            PL D           E +      + G K
Sbjct: 118 TTSNPYHAINPAIRSRAQIFELY--------PLNDEDVRQALTRAIEDD------ENGLK 163

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK--TITREIADAALLRLAI 255
                + ++A    + +S+G  R A   L      A+        +T + A   L + A 
Sbjct: 164 TYQPKIDEDAMTYFSTQSQGDVRSALNALELAVLSADNDKDGYRHVTLQDAKDCLQKGAF 223

Query: 256 --DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
             DK G    D+  ++   ++  G  V              A+  L    +I+ G +   
Sbjct: 224 VSDKDGDMHYDV--MSAFQKSIRGSDV------------NAALHYLAR--LIEAGDLPTI 267

Query: 314 PRGRLLMPIAWQHLGIDIPH 333
              R L+ I+++ +G+  P+
Sbjct: 268 V--RRLLVISYEDIGLASPN 285


>gi|227524305|ref|ZP_03954354.1| crossover junction endodeoxyribonuclease [Lactobacillus hilgardii
           ATCC 8290]
 gi|227088536|gb|EEI23848.1| crossover junction endodeoxyribonuclease [Lactobacillus hilgardii
           ATCC 8290]
          Length = 424

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 68/328 (20%), Positives = 114/328 (34%), Gaps = 51/328 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP  +EE  GQ +     K+     KA+   L  ++  GPPG GKT++A  +A 
Sbjct: 4   PLAYRMRPTKIEEIVGQQDLVGPGKIISRMVKAK--MLSSMILYGPPGTGKTSIASAIAG 61

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR  +     K    + A    +    VL +DEIHRL    ++ L P +E   + 
Sbjct: 62  STKYAFRVLNAATDTKKDLQVVAEEAKMSGTVVLLLDEIHRLDKTKQDFLLPLLEKGAII 121

Query: 136 LM--VGEGPSARSVKINLSR-----FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           L+    E P         SR        ++       +   L+D                
Sbjct: 122 LIGATTENPYININPAIRSRTQIFEVHPLSPKDIKQAVLRALKD---------------- 165

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE--IA 246
              V+ G     ++++D A   +   + G  R A   L            K I  +  + 
Sbjct: 166 ---VKNGLGQFHVSLSDPAMEFLTTATNGDLRSALNGLELAVKSTPENDDKMIDIDLSVI 222

Query: 247 DAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +  L R ++  DK G    D      +   F     G +  +A                +
Sbjct: 223 EECLQRKSLSADKNGDAHYD------VISAFQKSIRGSDVDAALH----------YASRL 266

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           I+ G +      R L+ IA++ +G+  P
Sbjct: 267 IESGDLVSLI--RRLIVIAYEDVGLANP 292


>gi|326780485|ref|ZP_08239750.1| AAA ATPase central domain protein [Streptomyces cf. griseus
           XylebKG-1]
 gi|326660818|gb|EGE45664.1| AAA ATPase central domain protein [Streptomyces cf. griseus
           XylebKG-1]
          Length = 471

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 78/332 (23%), Positives = 118/332 (35%), Gaps = 60/332 (18%)

Query: 21  LLRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
            +RPR L+E  GQ       S L+  +            V+  GPPG GKTTLA VV++ 
Sbjct: 41  RMRPRVLDEVVGQQHLLKPGSPLRRLVGKGGGGPAGASSVILWGPPGTGKTTLAYVVSKA 100

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAME 130
               F   S  + A   ++ A++ +            VLF+DEIHR S   ++ L PA+E
Sbjct: 101 TNKRFVELSA-ITAGVKEVRAVIESARRATGGFGKETVLFLDEIHRFSKAQQDSLLPAVE 159

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ-----DRFGIPIRLNFY 183
           +  + L+    E P    +   LSR  L+   +        L      D  G+   +   
Sbjct: 160 NRWVTLIAATTENPYFSIISPLLSRSLLLTLESLTDDDLRALLRRTLTDERGLGGAVAL- 218

Query: 184 EIEDLKTIVQRGAKLT-GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
             ED +  + R A      A+T   A   A  + G   I    L    D A V       
Sbjct: 219 -PEDAEAHLLRIAGGDARRALTALEAAAGAAIATGAAEITLETLEATVDRAAVK------ 271

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
                        D+ G    D+   + + ++  G  V                 D    
Sbjct: 272 ------------YDRDGDQHYDVA--SALIKSIRGSDV-----------------DAALH 300

Query: 303 YMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           Y+ +       PR   R LM  A + +G+  P
Sbjct: 301 YLARMIEAGEDPRFIARRLMISASEDIGLADP 332


>gi|227510161|ref|ZP_03940210.1| crossover junction endodeoxyribonuclease [Lactobacillus brevis
           subsp. gravesensis ATCC 27305]
 gi|227190366|gb|EEI70433.1| crossover junction endodeoxyribonuclease [Lactobacillus brevis
           subsp. gravesensis ATCC 27305]
          Length = 424

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 68/328 (20%), Positives = 113/328 (34%), Gaps = 51/328 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP  +EE  GQ +     K+     KA+   L  ++  GPPG GKT++A  +A 
Sbjct: 4   PLAYRMRPTKIEEIVGQQDLVGPGKIISRMVKAK--MLSSMILYGPPGTGKTSIASAIAG 61

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR  +     K    + A    +    VL +DEIHRL    ++ L P +E   + 
Sbjct: 62  STKYAFRVLNAATDTKKDLQVVAEEAKMSGTVVLLLDEIHRLDKTKQDFLLPLLEKGAII 121

Query: 136 LM--VGEGPSARSVKINLSR-----FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           L+    E P         SR        ++       +   L+D                
Sbjct: 122 LIGATTENPYININPAIRSRTQIFEVHPLSPKDIKQAVLRALKD---------------- 165

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE--IA 246
              V+ G     + ++D A   +   + G  R A   L            K I  +  + 
Sbjct: 166 ---VKNGLGQFHVNLSDPAMEFLTTTTNGDLRSALNGLELAVKSTPENDDKMIDIDLSVI 222

Query: 247 DAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +  L R ++  DK G    D      +   F     G +  +A                +
Sbjct: 223 EECLQRKSLSADKNGDAHYD------VISAFQKSIRGSDVDAALH----------YASRL 266

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           I+ G +      R L+ IA++ +G+  P
Sbjct: 267 IESGDLVSLI--RRLIVIAYEDVGLANP 292


>gi|260753314|ref|YP_003226207.1| recombination factor protein RarA [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
 gi|258552677|gb|ACV75623.1| AAA ATPase central domain protein [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
          Length = 449

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 65/332 (19%), Positives = 112/332 (33%), Gaps = 52/332 (15%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           + +      +LRP+ L +  GQ        +      A    L  ++  GPPG GKT++A
Sbjct: 21  LPENRPLADILRPKHLSDVIGQAHVTGENGIIGRMVAA--GRLSSLILWGPPGTGKTSIA 78

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALL------TNLEDRDVLFIDEIHRLSIIVEEIL 125
           Q++A  +G+ F   S  + +   DL  +            + +LFIDEIHR +   ++  
Sbjct: 79  QLLAESVGMRFEMVSA-IFSGVADLKKIFLKAEHHRQQGRQTLLFIDEIHRFNKGQQDSF 137

Query: 126 YPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
            P +E+    L+    E PS       LSR  ++            L +R          
Sbjct: 138 LPYIENGTFVLVGATTENPSFALNAALLSRAQVVTLNRLDEEALGLLLERAETV------ 191

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
                        +L  +      A             A    R + + AE+  A  +T+
Sbjct: 192 -----------SGQLLPVDEDARKAL---------IASADGDGRFLLNQAEILLAMNLTK 231

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
            ++   L ++   +M     D            G       ISA     R +       Y
Sbjct: 232 SLSVPELAQILQKRMAIYDKDR----------DGH---YNLISALHKSVRGSDPQAALYY 278

Query: 304 MIQQGFIQRTPRG--RLLMPIAWQHLGIDIPH 333
           + +       P    R L  +A + +G+  P 
Sbjct: 279 LSRMLVAGEDPLYLLRRLTRMANEEVGLADPR 310


>gi|56551017|ref|YP_161856.1| recombination factor protein RarA [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|56542591|gb|AAV88745.1| AAA ATPase central domain protein [Zymomonas mobilis subsp. mobilis
           ZM4]
          Length = 449

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 67/332 (20%), Positives = 119/332 (35%), Gaps = 52/332 (15%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           + +      +LRP+ L +  GQ        +      A    L  ++  GPPG GKT++A
Sbjct: 21  LPENRPLADILRPKHLSDVIGQAHVTGENGIIGRMVAA--GRLSSLILWGPPGTGKTSIA 78

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALL------TNLEDRDVLFIDEIHRLSIIVEEIL 125
           Q++A  +G+ F   S  + +   DL  +            + +LFIDEIHR +   ++  
Sbjct: 79  QLLAESVGMRFEMVSA-IFSGVADLKKIFLKAEHHRQQGRQTLLFIDEIHRFNKGQQDSF 137

Query: 126 YPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
            P +E+    L+    E PS       LSR  ++                       N  
Sbjct: 138 LPYIENGTFVLVGATTENPSFALNAALLSRAQVVTL---------------------NRL 176

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           + E L  +++R      ++       E A ++      A    R + + AE+  A  +T+
Sbjct: 177 DEEALGLLLERA---ETVSGQLLPVDENARKALI--ASADGDGRFLLNQAEILLAMNLTK 231

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
            ++   L ++   +M     D            G       ISA     R +       Y
Sbjct: 232 SLSVPELAQILQKRMAIYDKDR----------DGH---YNLISALHKSVRGSDPQAALYY 278

Query: 304 MIQQGFIQRTPRG--RLLMPIAWQHLGIDIPH 333
           + +       P    R L  +A + +G+  P 
Sbjct: 279 LSRMLVAGEDPLYLLRRLTRMANEEVGLADPR 310


>gi|332246195|ref|XP_003272238.1| PREDICTED: ATPase WRNIP1 isoform 3 [Nomascus leucogenys]
          Length = 587

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 63/335 (18%), Positives = 118/335 (35%), Gaps = 31/335 (9%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           R + Q       +RP TL+++ GQ  A     +     +     +  ++  GPPG GKTT
Sbjct: 192 RQMLQGKPLADTMRPDTLQDYFGQSRAVGQDTLLRSLLETNE--IPSLILWGPPGCGKTT 249

Query: 70  LAQVVARELGVNFRST--SGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSII 120
           LA ++A     +           AK  D+  ++   +        + +LFIDEIHR +  
Sbjct: 250 LAHIIANNSKKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKS 309

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++   P +E   + L+    E PS +     LSR  +I            +  R    +
Sbjct: 310 QQDTFLPHVECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAINSL 369

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLA---VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
            ++  +       +   +  +      + D+A   +A  S G  R     L+     A +
Sbjct: 370 GIHVLDSSRPTDPLSHSSNSSSEPAMFIEDKAVDTLAYLSDGDARAGLNGLQLAV-LARL 428

Query: 236 AHAKTITRE-----IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
           +  K   ++          L+     K G  +  + Y      ++         ISA   
Sbjct: 429 SSRKMFCKKSGQSYSPSRVLITENDVKEGLQRSHILYDRAGEEHYNC-------ISALHK 481

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIA 323
             R + ++    ++ +       P    R L+  A
Sbjct: 482 SMRGSDQNASLYWLARMLEGGEDPLYVARRLVRFA 516


>gi|227513090|ref|ZP_03943139.1| crossover junction endodeoxyribonuclease [Lactobacillus buchneri
           ATCC 11577]
 gi|227083665|gb|EEI18977.1| crossover junction endodeoxyribonuclease [Lactobacillus buchneri
           ATCC 11577]
          Length = 424

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 69/329 (20%), Positives = 116/329 (35%), Gaps = 53/329 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP  +EE  GQ +     K+     KA+   L  ++  GPPG GKT++A  +A 
Sbjct: 4   PLAYRMRPTKIEEIVGQQDLVGPGKIISRMVKAK--MLSSMILYGPPGTGKTSIASAIAG 61

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
                FR  +     K  DL  ++   +     VL +DEIHRL    ++ L P +E   +
Sbjct: 62  STKYAFRVLNAATDTK-KDLQVVVEEAKMSGTVVLLLDEIHRLDKTKQDFLLPLLEKGAI 120

Query: 135 DLM--VGEGPSARSVKINLSR-----FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
            L+    E P         SR        ++       +   L+D               
Sbjct: 121 ILIGATTENPYININPAIRSRTQIFEVHPLSPKDIKQAVLRALKD--------------- 165

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE--I 245
               V+ G     ++++D A   +   + G  R A   L            K I  +  +
Sbjct: 166 ----VKNGLGQFHVSLSDPAMEFLTTATNGDLRSALNGLELAVKSTPENDDKMIDIDLSV 221

Query: 246 ADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
            +  L R ++  DK G    D      +   F     G +  +A                
Sbjct: 222 IEECLQRKSLSADKNGDAHYD------VISAFQKSIRGSDVDAALH----------YASR 265

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           +I+ G +      R L+ IA++ +G+  P
Sbjct: 266 LIESGDLVSLI--RRLIVIAYEDVGLANP 292


>gi|296129660|ref|YP_003636910.1| AAA ATPase central domain protein [Cellulomonas flavigena DSM
           20109]
 gi|296021475|gb|ADG74711.1| AAA ATPase central domain protein [Cellulomonas flavigena DSM
           20109]
          Length = 473

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 78/328 (23%), Positives = 121/328 (36%), Gaps = 36/328 (10%)

Query: 21  LLRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEAL--DHVLFVGPPGLGKTTLAQVVA 75
            +RPRTL E  GQ       S L+  +E A   A       V+  GPPG GKTTLA +VA
Sbjct: 26  RMRPRTLAEVAGQGHLLVPGSPLRRLVEPADDAARRAAPSSVVLWGPPGTGKTTLAYLVA 85

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPA 128
              G  F   S  V A   D+ A++ +   R        VLFIDE+HR +   ++ L P+
Sbjct: 86  STSGRRFVELSA-VTAGVKDVRAVVEDARRRLAADGSETVLFIDEVHRFTKAQQDALLPS 144

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           +E+  + L+    E PS       LSR  L+            L  R  +          
Sbjct: 145 VENRWVTLVAATTENPSFSVNSPLLSRSLLLTLQPLTTDDVRTLLQRAVVD--------- 195

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
                 +RG     + + D+A   +   + G  R A  +L      A          +  
Sbjct: 196 ------ERGLAG-AVTLEDDALDHLLRLAGGDARKALTVLEAAAGAALADGGARPDGDAP 248

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
                 + +D      ++        R    G    + +SA +   R +  D    Y+ +
Sbjct: 249 ADGGAPVVVD---LATVERAIDVAAVRYDRDGDQHYDVVSAFIKSVRGSDVDAALHYLAR 305

Query: 307 QGFIQRTPR--GRLLMPIAWQHLGIDIP 332
                  PR   R ++  A + +G+  P
Sbjct: 306 MVAAGEDPRFIARRIVISAAEDVGMADP 333


>gi|109069429|ref|XP_001090565.1| PREDICTED: ATPase WRNIP1 isoform 2 [Macaca mulatta]
          Length = 614

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 63/335 (18%), Positives = 118/335 (35%), Gaps = 31/335 (9%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           R + Q       +RP TL+++ GQ  A     +     +     +  ++  GPPG GKTT
Sbjct: 219 RQMLQGKPLADTMRPDTLQDYFGQSRAVGQDTLLRSLLETNE--IPSLILWGPPGCGKTT 276

Query: 70  LAQVVARELGVNFRST--SGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSII 120
           LA ++A     +           AK  D+  ++   +        + +LFIDEIHR +  
Sbjct: 277 LAHIIANNSKKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKS 336

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++   P +E   + L+    E PS +     LSR  +I            +  R    +
Sbjct: 337 QQDTFLPHVECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAINSL 396

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLA---VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
            ++  +       +   +  +      + D+A   +A  S G  R     L+     A +
Sbjct: 397 GIHVLDSSRPTDPLSHSSNSSSEPAMFIEDKAVDTLAYLSDGDARAGLNGLQLAV-LARL 455

Query: 236 AHAKTITRE-----IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
           +  K   ++          L+     K G  +  + Y      ++         ISA   
Sbjct: 456 SSRKMFCKKSGQSYSPSRVLITENDVKEGLQRSHILYDRAGEEHYNC-------ISALHK 508

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIA 323
             R + ++    ++ +       P    R L+  A
Sbjct: 509 SMRGSDQNASLYWLARMLEGGEDPLYVARRLVRFA 543


>gi|257792296|ref|YP_003182902.1| AAA ATPase central domain-containing protein [Eggerthella lenta DSM
           2243]
 gi|317490217|ref|ZP_07948705.1| ATPase [Eggerthella sp. 1_3_56FAA]
 gi|257476193|gb|ACV56513.1| AAA ATPase central domain protein [Eggerthella lenta DSM 2243]
 gi|316910711|gb|EFV32332.1| ATPase [Eggerthella sp. 1_3_56FAA]
          Length = 446

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 73/351 (20%), Positives = 122/351 (34%), Gaps = 57/351 (16%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M      +      E A ++  +RPRTLEE  GQ EA         A +   + L  V+ 
Sbjct: 1   MDTLFTEMENERKSEVAPLAVRMRPRTLEEVVGQDEAVGPGSWLRNAIEQ--DQLSSVIL 58

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFID 112
            GP G GKT+LA V+A      F   S  +     DL   +   +        R +LF+D
Sbjct: 59  FGPAGTGKTSLAHVIAETTKATFVEVSA-IGGTVSDLRREIDAADKRLSAFGLRTILFVD 117

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           EIHR +   ++ L  A+ED  L L+    E P        +SR  ++             
Sbjct: 118 EIHRFNRSQQDALLHAVEDRVLVLVGATTENPFFEVNSALISRSRVVEL----------- 166

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLT-----GLAVTDEAACEIAMRSRGTPRIAGRL 225
                     +    E++ ++V+R             +  +A   I + + G  R A   
Sbjct: 167 ----------HGLSDEEIVSLVERALADERGLGGRYRLDAKARDAIVLLAGGDGRAALTT 216

Query: 226 LRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQ-LDLRYLTMIARNFGGGPVGIET 284
           L       +   +K   +   D          + +D+  D+ Y               + 
Sbjct: 217 LELAAGMVQPGTSKKPAKITEDNVRAATPHRSLPYDKNKDMHY---------------DV 261

Query: 285 ISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           ISA +   R +  D    ++ +       P+   R +   A + +G   P 
Sbjct: 262 ISAFIKSMRGSDPDAALYWLARMIDGGEDPKFIARRMFIAASEDIGNADPQ 312


>gi|148259183|ref|YP_001233310.1| recombination factor protein RarA [Acidiphilium cryptum JF-5]
 gi|326402336|ref|YP_004282417.1| replication-associated recombination protein A [Acidiphilium
           multivorum AIU301]
 gi|146400864|gb|ABQ29391.1| Recombination protein MgsA [Acidiphilium cryptum JF-5]
 gi|325049197|dbj|BAJ79535.1| replication-associated recombination protein A [Acidiphilium
           multivorum AIU301]
          Length = 444

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 68/330 (20%), Positives = 113/330 (34%), Gaps = 60/330 (18%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP  L E  GQ              +    +L  ++  GPPG+GKTT+A+++A 
Sbjct: 28  PLAERLRPHELAEVIGQPHLVGPDGTLTRMLER--GSLASLILWGPPGVGKTTIARLLAD 85

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAME 130
             G+ F   S  V +   DL  +      R       +LF+DEIHR +   ++   P +E
Sbjct: 86  RAGLVFVQISA-VFSGVADLKRVFEEAARRRRTGARTLLFVDEIHRFNRAQQDGFLPVVE 144

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +  + L+    E PS       LSR  ++                          + + L
Sbjct: 145 EGTITLVGATTENPSFELNGALLSRCQVLVLRR---------------------LDDDAL 183

Query: 189 KTIVQRG----AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           + +++R     A+   L     AA        G         R + + AE   A   +  
Sbjct: 184 EQLLRRAEAVTARKLALTDAARAALRAMADGDG---------RAILNMAEQLFAANPSAP 234

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           + +AAL  +   +      D         ++         ISA     R +  D    + 
Sbjct: 235 LDEAALATIIARRAALYDRDRE------EHY-------NLISALHKSMRGSDPDAALYWY 281

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
            +       PR   R L   A + +G+  P
Sbjct: 282 ARMLAGGEDPRYIARRLTRFAVEDIGLADP 311


>gi|87202996|gb|ABD30806.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|320140486|gb|EFW32340.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus MRSA131]
 gi|320144025|gb|EFW35794.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus MRSA177]
          Length = 415

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 64/320 (20%), Positives = 122/320 (38%), Gaps = 43/320 (13%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ ++E   Q        +       +   L  ++F GPPG+GKT++A+ ++      
Sbjct: 1   MRPKNIDEIISQQHLVGPRGIIRRMVDTK--KLTSMIFYGPPGIGKTSIAKAISGSTQYK 58

Query: 82  FRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137
           FR  +  V     D+  ++   +   + +L +DEIHRL    ++ L P +E+ ++ L+  
Sbjct: 59  FRQLNA-VTNTKKDMQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKIVLIGA 117

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
               P         SR  +            PL D           E +      + G K
Sbjct: 118 TTSNPYHAINPAIRSRAQIFELY--------PLNDEDVRQALTRAIEDD------ENGLK 163

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK--TITREIADAALLRLAI 255
                + ++A    + +S+G  R A   L      A+        +T + A   L + A 
Sbjct: 164 TYQPKIDEDAMTYFSTQSQGDVRSALNALELAVLSADNDKDGYRHVTLQDAKDCLQKGAF 223

Query: 256 --DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
             DK G    D+  ++   ++  G  V              A+  L    +I+ G +   
Sbjct: 224 VSDKDGDMHYDV--MSAFQKSIRGSDV------------NAALHYLAR--LIEAGDLPTI 267

Query: 314 PRGRLLMPIAWQHLGIDIPH 333
              R L+ I+++ +G+  P+
Sbjct: 268 V--RRLLVISYEDIGLASPN 285


>gi|312977419|ref|ZP_07789167.1| ATPase, AAA family [Lactobacillus crispatus CTV-05]
 gi|310895850|gb|EFQ44916.1| ATPase, AAA family [Lactobacillus crispatus CTV-05]
          Length = 420

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 75/321 (23%), Positives = 121/321 (37%), Gaps = 43/321 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+TL +  GQ E     K      K        +L  GPPG GKT+LAQ++A+
Sbjct: 6   PIAEQMRPQTLADMVGQSELLGPGKALRNIIKQHVNI--SLLLWGPPGTGKTSLAQIIAK 63

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           E    F S +  +  KA  L  ++   + +  VL IDEIHR++  +++ L P +E+  + 
Sbjct: 64  ENDYPFASFNASIDNKA-QLNNIINAYKYQTFVLLIDEIHRMTKNLQDFLLPYLENGHVL 122

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           L+    E P    V    SR  +           NPL +     +         L     
Sbjct: 123 LVGSTTENPIMSIVPAVRSRCQIFEF--------NPLTEDDIAAV---------LNKACT 165

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           +  KL    V   +   IA  + G  RIA  +L  V   A      T+    +       
Sbjct: 166 KVLKLVDHQVEKNSLNLIAAAADGDLRIALNILETV--HALNPKKITLANVKSFTKQQFF 223

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
           + DK      D  YL   + +  G     +T +A                +++ G +   
Sbjct: 224 SYDKKATKHYD--YLAAYSDSMAGS----DTDAAL----------YYLAILLKNGDLASV 267

Query: 314 PRGRLLMPIAWQHLGIDIPHR 334
              R L  I + ++G+  P +
Sbjct: 268 V--RRLREIPYTYIGLANPQQ 286


>gi|317507132|ref|ZP_07964892.1| ATPase [Segniliparus rugosus ATCC BAA-974]
 gi|316254578|gb|EFV13888.1| ATPase [Segniliparus rugosus ATCC BAA-974]
          Length = 449

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 71/321 (22%), Positives = 109/321 (33%), Gaps = 40/321 (12%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            +RP  + +  GQ       +           A   V+  GPPG GKTT+A +++   G 
Sbjct: 14  RMRPNDVADVLGQDHLLGPGRPLRRLVDGHGVA--SVVLHGPPGTGKTTIASLLSSATGR 71

Query: 81  NFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
            F + S        + +  + A +      R VLFIDE+HR S   ++ L  A+E   + 
Sbjct: 72  EFVALSALTAGVKEVREVIEDARMRLAAGVRTVLFIDEVHRFSKTQQDALLAAVEHQIVL 131

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           L+    E P    V   LSR  ++                            EDL  ++ 
Sbjct: 132 LVAATTENPGFAVVSPLLSRSLVLELRPLA---------------------REDLDALIS 170

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R            A  + A       R+AG   RR+    E A           AA    
Sbjct: 171 RALADERGYGGSVALSDEAR--EHLLRVAGGDARRLLTALEAAADLAQAEAPDSAAWTVS 228

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
                  DQ+       + R    G    + +SA +   R +  D    Y+ +       
Sbjct: 229 ------LDQVTASLDEAMVRYDKDGDQHYDVVSAFIKSIRGSDVDAALHYLARMVIAGED 282

Query: 314 PR--GRLLMPIAWQHLGIDIP 332
           PR   R LM  A + +G+  P
Sbjct: 283 PRFIARRLMIHASEDVGMADP 303


>gi|313899860|ref|ZP_07833363.1| recombination factor protein RarA [Clostridium sp. HGF2]
 gi|312955475|gb|EFR37140.1| recombination factor protein RarA [Clostridium sp. HGF2]
          Length = 421

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 73/327 (22%), Positives = 125/327 (38%), Gaps = 53/327 (16%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           +      +RP+ L++  GQ       KV       +   L  ++F GPPG GKTTLA V+
Sbjct: 2   KQPLAFRMRPQHLDDIIGQQHLIGEGKVLRRCVLEK--RLFSMIFYGPPGTGKTTLAMVL 59

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           A EL + FR  +  V     DL  +    +  +  ++ IDE+HRL+   +++L P +E+ 
Sbjct: 60  ANELELPFRMFNA-VTGNKKDLETIFQEAKFYEGLIVIIDEVHRLNKDKQDLLLPHVENG 118

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
            + L+      P         SR  L         +    Q+     +    +  + L  
Sbjct: 119 NITLIGATTSNPLHAINPAIRSRCHLF-------EIKQAQQEDIEQALMKAIHHQDGLND 171

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA-- 248
            VQ         + +EA   IA  S G  R +  +L        +A    IT+E+     
Sbjct: 172 SVQ---------IEEEALHIIARHSNGDIRYSLNILE----ICALASDGVITQELVSQYS 218

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGL---SEPRDAIEDLIEPYMI 305
               +++D  G    D+  L+   ++  G  V       G+   +   D+IE        
Sbjct: 219 QFPNMSMDSDGDGYYDV--LSGFQKSIRGSDVDAALYYLGIMIEANDMDSIE-------- 268

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIP 332
                      R L+  A++ +G+  P
Sbjct: 269 -----------RRLLVTAYEDIGLGNP 284


>gi|85707807|ref|ZP_01038873.1| ATPase [Erythrobacter sp. NAP1]
 gi|85689341|gb|EAQ29344.1| ATPase [Erythrobacter sp. NAP1]
          Length = 439

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 72/340 (21%), Positives = 121/340 (35%), Gaps = 62/340 (18%)

Query: 9   SRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKAR---AEALDHVLFVGPPG 64
           + +  + DA ++  LRPR+L+E  GQ           E A  R   A  L  ++  GPPG
Sbjct: 14  AADEPRADAPLADRLRPRSLDEVIGQEHLTGP-----EGAIGRMVAAGRLASMVLWGPPG 68

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLS 118
            GKT++A+++A  +G+ F S S  V +   DL                 +LF+DEIHR +
Sbjct: 69  TGKTSIARLLADAVGMRFVSISA-VFSGVADLKKAFAEADKMADAGKTTLLFVDEIHRFN 127

Query: 119 IIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
              ++   P +E   + L+    E PS       LSR  ++                   
Sbjct: 128 RAQQDGFLPFVERGTVTLVGATTENPSFALNAALLSRAQVLIL----------------- 170

Query: 177 PIRLNFYEIEDLKTIVQRGAKLT-GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
                    E L+ ++ R  +L   L +T++A   +   + G  R        + +    
Sbjct: 171 ----ERLSHEALEKLLSRAEQLEGPLPLTEDARAALIASADGDGRFLLGQAETLYNA--- 223

Query: 236 AHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDA 295
                +   +  AAL      ++     D            G       ISA     R +
Sbjct: 224 ----KLDAPLDPAALGAFLQRRVAVYDKDR----------DGH---YNLISALHKSLRGS 266

Query: 296 IEDLIEPYMIQQGFIQRTPRG--RLLMPIAWQHLGIDIPH 333
                  Y+ +       P    R L+  A + +G+  P 
Sbjct: 267 DPQASLYYLARMLTAGEEPLYVLRRLVRFASEDIGLADPQ 306


>gi|118586592|ref|ZP_01544033.1| ATPase, AAA family [Oenococcus oeni ATCC BAA-1163]
 gi|290890861|ref|ZP_06553927.1| hypothetical protein AWRIB429_1317 [Oenococcus oeni AWRIB429]
 gi|118432971|gb|EAV39696.1| ATPase, AAA family [Oenococcus oeni ATCC BAA-1163]
 gi|290479512|gb|EFD88170.1| hypothetical protein AWRIB429_1317 [Oenococcus oeni AWRIB429]
          Length = 429

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 67/332 (20%), Positives = 123/332 (37%), Gaps = 50/332 (15%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
            +      +RP+ +E+  GQ       K+     +A    L  ++  G PG GKT++A  
Sbjct: 2   NKQPLAFRMRPKKIEDVVGQQHLIGKGKIIWRMVQAH--RLSSMILYGEPGTGKTSIASA 59

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLT--NLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
           +A    ++FR  +     K  +L  +     +    +L +DEIHRL    ++ L P +E 
Sbjct: 60  IAGSTELSFRILNAATDGK-KELQEVAEEGKMSGSVILLLDEIHRLDKTKQDFLLPHLES 118

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
            ++ L+    E P         SR       T++  +    +      I     + E+  
Sbjct: 119 GRIVLIGATTENPYLSVTPAIRSR-------TQIFHVEALSEKDIKTAINRALSDKEN-- 169

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT---ITREIA 246
                G     + + D+A   ++  + G  R A   L       +    +    IT  I 
Sbjct: 170 -----GLGNYNIKLDDQAKNHLSTATNGDLRSALNGLELAVLSTKAVGKEKEIHITLPII 224

Query: 247 DAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +  + R ++  DK G    D+                   ISA     R +  D    Y+
Sbjct: 225 EETIQRKSMSGDKNGDAHYDV-------------------ISAFQKSIRGSDADAGIYYL 265

Query: 305 ---IQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
              ++ G +  T   R L+ IA++ +G+  P+
Sbjct: 266 GRILEAGDL--TIAARRLLVIAYEDVGLANPN 295


>gi|114605200|ref|XP_001159547.1| PREDICTED: ATPase WRNIP1 isoform 2 [Pan troglodytes]
          Length = 614

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 63/335 (18%), Positives = 119/335 (35%), Gaps = 31/335 (9%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           R + Q       +RP TL+++ GQ +A     +     +     +  ++  GPPG GKTT
Sbjct: 219 RQMLQGKPLADTMRPDTLQDYFGQSKAVGQDTLLRSLLETNE--IPSLILWGPPGCGKTT 276

Query: 70  LAQVVARELGVNFRST--SGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSII 120
           LA ++A     +           AK  D+  ++   +        + +LFIDEIHR +  
Sbjct: 277 LAHIIASNSKKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKS 336

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++   P +E   + L+    E PS +     LSR  +I            +  R    +
Sbjct: 337 QQDTFLPHVECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAINSL 396

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLA---VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
            ++  +       +   +  +      + D+A   +A  S G  R     L+     A +
Sbjct: 397 GIHVLDSSRPTDPLSHSSNSSSEPAMFIEDKAVDTLAYLSDGDARAGLNGLQLAV-LARL 455

Query: 236 AHAKTITRE-----IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
           +  K   ++          L+     K G  +  + Y      ++         ISA   
Sbjct: 456 SSRKMFCKKSGQSYSPSRVLITENDVKEGLQRSHILYDRAGEEHYNC-------ISALHK 508

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIA 323
             R + ++    ++ +       P    R L+  A
Sbjct: 509 SMRGSDQNASLYWLARMLEGGEDPLYVARRLVRFA 543


>gi|302680609|ref|XP_003029986.1| hypothetical protein SCHCODRAFT_57429 [Schizophyllum commune H4-8]
 gi|300103677|gb|EFI95083.1| hypothetical protein SCHCODRAFT_57429 [Schizophyllum commune H4-8]
          Length = 552

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 71/345 (20%), Positives = 127/345 (36%), Gaps = 31/345 (8%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
            N+         LRP TL EF GQ    ++  +    +     A   ++F GPPG GKTT
Sbjct: 76  SNLQAAAPLAEKLRPSTLAEFVGQAHLTASDSLL--MSTISNGAAGSMIFWGPPGCGKTT 133

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVE 122
           LA+++A+  G  FR  S    A   D+ A+    +        + VLF+DEIHR +   +
Sbjct: 134 LARLIAKHTGSIFRELSATE-AGIKDVRAVFEEAKNTLMLTGRKSVLFLDEIHRFNKAQQ 192

Query: 123 EILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAA---------TTRVGLLTNPLQ 171
           +I  P +E   + L+    E PS + V   LSR  +            T     +    +
Sbjct: 193 DIFLPYVEQGYIQLIGATTENPSFKLVSPLLSRCRVFVLERLTDDDIKTIIHHAIQRAAK 252

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTD-EAACEIAMRSRGTPRIAGRLLRRVR 230
           D        +  ++ DL +     +  T +          +A     TP++   ++    
Sbjct: 253 DDEAYSQTPDEPDMLDLTSSQPASSSQTAVPSQASMNETALAAFPHITPKVTSTIV---- 308

Query: 231 DFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
               +A     T       +LR + +      ++    +++      G    + ISA   
Sbjct: 309 ---ALAGGDARTALSLLELVLRASPNSEESTLINNLRKSVVVSYDRTGESHYDMISALHK 365

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
             R +  +    ++ +       P    R +   A + +G+   H
Sbjct: 366 SVRGSDGNAAMYWLARMLTAGEDPIFIARRMTVCASEDIGLADNH 410


>gi|325833397|ref|ZP_08165846.1| ATPase, AAA family [Eggerthella sp. HGA1]
 gi|325485321|gb|EGC87790.1| ATPase, AAA family [Eggerthella sp. HGA1]
          Length = 446

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 74/346 (21%), Positives = 120/346 (34%), Gaps = 47/346 (13%)

Query: 1   MMDREGLLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M      +      E A ++  +RPRTLEE  GQ EA         A +   + L  V+ 
Sbjct: 1   MDTLFTEMENERKSEVAPLAVRMRPRTLEEVVGQDEAVGPGSWLRNAIEQ--DQLSSVIL 58

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFID 112
            GP G GKT+LA V+A      F   S  +     DL   +   +        R +LF+D
Sbjct: 59  FGPAGTGKTSLAHVIAETTKATFVEVSA-IGGTVSDLRREIDAADKRLSAFGLRTILFVD 117

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           EIHR +   ++ L  A+ED  L L+    E P        +SR  ++            L
Sbjct: 118 EIHRFNRSQQDALLHAVEDRVLVLVGATTENPFFEVNSALISRSRVVELHGLSDEEIVSL 177

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
            +R                 + +RG       +  +A   I + + G  R A   L    
Sbjct: 178 VER---------------ALVDERGLGG-RYRLDAKARDAIVLLAGGDGRAALTTLELAA 221

Query: 231 DFAEVAHAKTITREIADAALLRLAIDKMGFDQ-LDLRYLTMIARNFGGGPVGIETISAGL 289
              +   +K   +   D          + +D+  D+ Y               + ISA +
Sbjct: 222 GMVQPGTSKKPAKITEDNVRAATPHRSLPYDKNKDMHY---------------DVISAFI 266

Query: 290 SEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
              R +  D    ++ +       P+   R +   A + +G   P 
Sbjct: 267 KSMRGSDPDAALYWLARMIDGGEDPKFIARRMFIAASEDIGNADPQ 312


>gi|138896137|ref|YP_001126590.1| recombination factor protein RarA [Geobacillus thermodenitrificans
           NG80-2]
 gi|196250090|ref|ZP_03148784.1| AAA ATPase central domain protein [Geobacillus sp. G11MC16]
 gi|134267650|gb|ABO67845.1| ATPase, AAA family [Geobacillus thermodenitrificans NG80-2]
 gi|196210274|gb|EDY05039.1| AAA ATPase central domain protein [Geobacillus sp. G11MC16]
          Length = 431

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 72/326 (22%), Positives = 113/326 (34%), Gaps = 45/326 (13%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +     +RPRT+++  GQ           +  K     +  +L  G PG GKT+LA  +A
Sbjct: 6   EPLAVRMRPRTIDDIVGQEHIIGPETPLYKMIKK--GYVPSLLLYGEPGTGKTSLAYAIA 63

Query: 76  RELGVNFRSTSGPVIAKA-GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           R       + +     K   + AA         +LFIDEIHRL+   +++L P +E   +
Sbjct: 64  RTAERELIAINATSAGKKEIEEAAEAARWSGNVLLFIDEIHRLNKAQQDVLLPHLESGLV 123

Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            L+    E P         SR   I    R+        D   I        ++      
Sbjct: 124 TLIGATTENPFHEVNPAIRSRCGQIQQLKRLKP-----ADILVI--------LKRALADS 170

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           +RG   T + + +E    IA  + G  R A  LL      A+         E   A+   
Sbjct: 171 ERGVGETPVIIAEELLWRIAEAAGGDARAALSLLEAAVAAADERDGCLYIDENIIASCTA 230

Query: 253 LA---IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ-- 307
                 DK G     L                   +SA     R +  D    Y+ +   
Sbjct: 231 NRGFTHDKYGDTYYSL-------------------LSAFQKSVRGSDADAALHYLARLLE 271

Query: 308 -GFIQRTPRGRLLMPIAWQHLGIDIP 332
            G +      R L+ IA++ +G+  P
Sbjct: 272 GGDLAAVC--RRLLVIAYEDIGLANP 295


>gi|227878587|ref|ZP_03996511.1| crossover junction endodeoxyribonuclease [Lactobacillus crispatus
           JV-V01]
 gi|293380972|ref|ZP_06627004.1| recombination factor protein RarA [Lactobacillus crispatus 214-1]
 gi|227861822|gb|EEJ69417.1| crossover junction endodeoxyribonuclease [Lactobacillus crispatus
           JV-V01]
 gi|290922469|gb|EFD99439.1| recombination factor protein RarA [Lactobacillus crispatus 214-1]
          Length = 420

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 75/321 (23%), Positives = 121/321 (37%), Gaps = 43/321 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+TL +  GQ E     K      K        +L  GPPG GKT+LAQ++A+
Sbjct: 6   PIAEQMRPQTLADMVGQSELLGPGKALRNIIKQHVNI--SLLLWGPPGTGKTSLAQIIAK 63

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           E    F S +  +  KA  L  ++   + +  VL IDEIHR++  +++ L P +E+  + 
Sbjct: 64  ENDYPFASFNASIDNKA-QLNNIINAYKYQTLVLLIDEIHRMTKNLQDFLLPYLENGHVL 122

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           L+    E P    V    SR  +           NPL +     +         L     
Sbjct: 123 LVGSTTENPIMSIVPAVRSRCQIFEF--------NPLTEDDIAAV---------LNKACT 165

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           +  KL    V   +   IA  + G  RIA  +L  V   A      T+    +       
Sbjct: 166 KVLKLVDHQVEKNSLNLIAAAADGDLRIALNILETV--HALNPKKITLANVKSFTKQQFF 223

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
           + DK      D  YL   + +  G     +T +A                +++ G +   
Sbjct: 224 SYDKKATKHYD--YLAAYSDSMAGS----DTDAAL----------YYLAILLKNGDLASV 267

Query: 314 PRGRLLMPIAWQHLGIDIPHR 334
              R L  I + ++G+  P +
Sbjct: 268 V--RRLREIPYTYIGLANPQQ 286


>gi|193787734|dbj|BAG52937.1| unnamed protein product [Homo sapiens]
          Length = 614

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 63/335 (18%), Positives = 119/335 (35%), Gaps = 31/335 (9%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           R + Q       +RP TL+++ GQ +A     +     +     +  ++  GPPG GKTT
Sbjct: 219 RQMLQGKPLADTMRPDTLQDYFGQSKAVGQDTLLRSLLETNE--IPSLILWGPPGCGKTT 276

Query: 70  LAQVVARELGVNFRST--SGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSII 120
           LA ++A     +           AK  D+  ++   +        + +LFIDEIHR +  
Sbjct: 277 LAHIIASNSKKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKS 336

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++   P +E   + L+    E PS +     LSR  +I            +  R    +
Sbjct: 337 QQDTFLPHVECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAINSL 396

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLA---VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
            ++  +       +   +  +      + D+A   +A  S G  R     L+     A +
Sbjct: 397 GIHVLDSSRPTDPLSHSSNSSSEPAMFIEDKAVDTLAYLSDGDARAGLNGLQLAV-LARL 455

Query: 236 AHAKTITRE-----IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
           +  K   ++          L+     K G  +  + Y      ++         ISA   
Sbjct: 456 SSRKMFCKKSGQSYSPSRVLITENDVKEGLQRSHILYDRAGEEHYNC-------ISALHK 508

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIA 323
             R + ++    ++ +       P    R L+  A
Sbjct: 509 SMRGSDQNASLYWLARMLEGGEDPLYVARRLVRFA 543


>gi|42519086|ref|NP_965016.1| recombination factor protein RarA [Lactobacillus johnsonii NCC 533]
 gi|41583373|gb|AAS08982.1| hypothetical protein LJ_1160 [Lactobacillus johnsonii NCC 533]
          Length = 420

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 75/324 (23%), Positives = 123/324 (37%), Gaps = 49/324 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
               L+RP+ L +F GQ +  S  K   +  K        +L  GPPG GKT+LAQ++AR
Sbjct: 6   PLADLIRPKNLSQFVGQTKLISEGKPLYQIIKNHVPI--SLLLWGPPGTGKTSLAQIIAR 63

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           E      + +  V  KA  +  + T      VL IDEIHR++  +++ L P +E+ Q+ L
Sbjct: 64  EYDYPLATFNASVDNKAKLMQIINTYPYQSFVLLIDEIHRMTTTLQDYLLPYLENGQILL 123

Query: 137 M--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           +    E P    V    SR  +    T                      + +D+  ++ R
Sbjct: 124 IGATTENPIMSIVPAVRSRCQIFEFET---------------------LDDKDISHVLIR 162

Query: 195 GAK----LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
             K    L    +  EA   IA  + G  R+A  LL  +        +    +E      
Sbjct: 163 ALKEVFHLEEKQIDKEAINIIARSADGDLRVALNLLETIHAINGDEISIESVKEFVKG-- 220

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
              A D+      D  YL   + +  G     +T +A                +++ G +
Sbjct: 221 QHFAYDRKATKHYD--YLAAYSDSMAGS----DTDAAL----------YYLTVLLKNGDL 264

Query: 311 QRTPRGRLLMPIAWQHLGIDIPHR 334
                 R L  I + ++G+  P +
Sbjct: 265 PSVV--RRLREIPYTYVGLANPEQ 286


>gi|241761401|ref|ZP_04759489.1| AAA ATPase central domain protein [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
 gi|241374308|gb|EER63805.1| AAA ATPase central domain protein [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
          Length = 449

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 65/332 (19%), Positives = 112/332 (33%), Gaps = 52/332 (15%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           + +      +LRP+ L +  GQ        +      A    L  ++  GPPG GKT++A
Sbjct: 21  LPENRPLADILRPKHLSDVIGQAHVTGENGIIGRMVAA--GRLSSLILWGPPGTGKTSIA 78

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALL------TNLEDRDVLFIDEIHRLSIIVEEIL 125
           Q++A  +G+ F   S  + +   DL  +            + +LFIDEIHR +   ++  
Sbjct: 79  QLLAESVGIRFEMVSA-IFSGVADLKKIFLKAEHHRQQGRQTLLFIDEIHRFNKGQQDSF 137

Query: 126 YPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
            P +E+    L+    E PS       LSR  ++            L +R          
Sbjct: 138 LPYIENGTFVLVGATTENPSFALNAALLSRAQVVTLNRLDEEALGLLLERAETV------ 191

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
                        +L  +      A             A    R + + AE+  A  +T+
Sbjct: 192 -----------SGQLLPVDEDARKAL---------IASADGDGRFLLNQAEILLAMNLTK 231

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
            ++   L ++   +M     D            G       ISA     R +       Y
Sbjct: 232 SLSVPELAQILQKRMAIYDKDR----------DGH---YNLISALHKSVRGSDPQAALYY 278

Query: 304 MIQQGFIQRTPRG--RLLMPIAWQHLGIDIPH 333
           + +       P    R L  +A + +G+  P 
Sbjct: 279 LSRMLVAGEDPLYLLRRLTRMANEEVGLADPR 310


>gi|262046401|ref|ZP_06019363.1| recombination factor protein RarA [Lactobacillus crispatus
           MV-3A-US]
 gi|260573272|gb|EEX29830.1| recombination factor protein RarA [Lactobacillus crispatus
           MV-3A-US]
          Length = 421

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 75/321 (23%), Positives = 121/321 (37%), Gaps = 43/321 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+TL +  GQ E     K      K        +L  GPPG GKT+LAQ++A+
Sbjct: 7   PIAEQMRPQTLADMVGQSELLGPGKALRNIIKQHVNI--SLLLWGPPGTGKTSLAQIIAK 64

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           E    F S +  +  KA  L  ++   + +  VL IDEIHR++  +++ L P +E+  + 
Sbjct: 65  ENDYPFASFNASIDNKA-QLNNIINAYKYQTLVLLIDEIHRMTKNLQDFLLPYLENGHVL 123

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           L+    E P    V    SR  +           NPL +     +         L     
Sbjct: 124 LVGSTTENPIMSIVPAVRSRCQIFEF--------NPLTEDDIAAV---------LNKACT 166

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           +  KL    V   +   IA  + G  RIA  +L  V   A      T+    +       
Sbjct: 167 KVLKLVDHQVEKNSLNLIAAAADGDLRIALNILETV--HALNPKKITLANVKSFTKQQFF 224

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
           + DK      D  YL   + +  G     +T +A                +++ G +   
Sbjct: 225 SYDKKATKHYD--YLAAYSDSMAGS----DTDAAL----------YYLAILLKNGDLASV 268

Query: 314 PRGRLLMPIAWQHLGIDIPHR 334
              R L  I + ++G+  P +
Sbjct: 269 V--RRLREIPYTYIGLANPQQ 287


>gi|148380525|ref|YP_001255066.1| ATPase, AAA family [Clostridium botulinum A str. ATCC 3502]
 gi|153933551|ref|YP_001384812.1| recombination factor protein RarA [Clostridium botulinum A str.
           ATCC 19397]
 gi|153936060|ref|YP_001388283.1| recombination factor protein RarA [Clostridium botulinum A str.
           Hall]
 gi|148290009|emb|CAL84128.1| putative ATPase [Clostridium botulinum A str. ATCC 3502]
 gi|152929595|gb|ABS35095.1| ATPase, AAA family [Clostridium botulinum A str. ATCC 19397]
 gi|152931974|gb|ABS37473.1| ATPase, AAA family [Clostridium botulinum A str. Hall]
          Length = 416

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 72/332 (21%), Positives = 124/332 (37%), Gaps = 60/332 (18%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
               L+RP+ LE+F GQ    S  K      K   +++ + +F GPPG GKTTLA ++A 
Sbjct: 3   PLADLMRPKKLEDFVGQKHILSENKPLYNLMK--NKSICNSIFYGPPGTGKTTLANIMAN 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED-----RDVLFIDEIHRLSIIVEEILYPAMED 131
            +   F   +    A   D+  + +++         VL+IDE+   +   ++ L   +ED
Sbjct: 61  YVDKKFYRLNA-TTASIKDIQEITSSINSLLNYSGVVLYIDELQHFTKKQQQALLEFIED 119

Query: 132 FQLDLM--VGEGPSARSVKINLSRF--TLIAATTRVGLLT------NPLQDRFGIPIRLN 181
            ++ L+    E P     K  LSR          R  ++       N L D+ GI I+  
Sbjct: 120 GRVILIASTTENPYFVIHKAILSRCNIFQFKPLNREDIILGLEKAINKLIDK-GINIKYT 178

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           F  +E +  I Q                       G  R A  +L    +     + +  
Sbjct: 179 FESLEYISEICQ-----------------------GDYRKAYNILELAVNSHCGFNIEIN 215

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
              I   A   +  D  G +  +   L+   ++  G            S+   A+  L  
Sbjct: 216 LDYIESLAQSNIRADATGDEYYN--ILSAFQKSIRG------------SDADAAVHYLAR 261

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
             +I+ G +      R L  +A + +G+  P+
Sbjct: 262 --LIKSGDMISIT--RRLSVMAAEDIGLAYPN 289


>gi|326917076|ref|XP_003204830.1| PREDICTED: ATPase WRNIP1-like [Meleagris gallopavo]
          Length = 440

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 60/303 (19%), Positives = 106/303 (34%), Gaps = 28/303 (9%)

Query: 51  AEALDHVLFVGPPGLGKTTLAQVVARELGVN--FRSTSGPVIAKAGDLAALLTNLE---- 104
           +  +  ++  GPPG GKTTLA ++A           T     AK  D+  +++  +    
Sbjct: 32  SHEIPSIILWGPPGCGKTTLAHIIANSSKKKGMRFVTLSATSAKTNDVRDVISQAQNEKR 91

Query: 105 ---DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAA 159
               + +LFIDEIHR +   ++   P +E   + L+    E PS +     LSR  +I  
Sbjct: 92  LFKRKTILFIDEIHRFNKSQQDTFLPHVECGTVTLIGATTENPSFQVNAALLSRCRVIVL 151

Query: 160 TTRVGLLTNPLQDR----FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRS 215
                     +  R     G+ +     +     T     +    + V ++A   +A   
Sbjct: 152 EKLSVEAMEAILLRAVKSLGVQVLGQGNQHSSSATGSSDESSELPVYVEEKALSTLAYLC 211

Query: 216 RGTPRIAGRLLRRVRDFAEVAHAKTITR----EIADAALLRLAIDKMGFDQLDLRYLTMI 271
            G  R     L+        A   T+         D  L+     K G  +  + Y    
Sbjct: 212 DGDARTGLNGLQLAVQARLAAGKTTVLSFTKGCSVDGVLITEEHVKEGLQRSHILYDRAG 271

Query: 272 ARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGI 329
             ++         ISA     R + E+    ++ +       P    R L+  A + +G+
Sbjct: 272 EEHYNC-------ISALHKSMRGSDENASLYWLARMLEGGEDPLYVARRLVRFASEDIGL 324

Query: 330 DIP 332
             P
Sbjct: 325 ADP 327


>gi|310800419|gb|EFQ35312.1| ATPase [Glomerella graminicola M1.001]
          Length = 566

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 65/334 (19%), Positives = 115/334 (34%), Gaps = 65/334 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEAC--SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
                +RPRTL+E  GQ        L+  IE+     + +  ++  G  G GKTT+A+ +
Sbjct: 150 PLAERMRPRTLDEVCGQDLVGSHGVLRSLIES-----DRVPSMILWGGSGTGKTTIARCI 204

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYP 127
           A+ +G  F   +    +   +   L             + ++F DEIHR S   +++   
Sbjct: 205 AQSVGSRFIEMNA-TSSGVAECKKLFAEAANELALTGRKTIIFCDEIHRFSKSQQDVFLK 263

Query: 128 AMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
            +E   + L+    E PS R  +  LSR      +                         
Sbjct: 264 PVEAGTITLIGATTENPSFRVQQALLSRCRTFTLSKLAN--------------------- 302

Query: 186 EDLKTIVQRG----AKLTGLAVTDEAACEIAMR-SRGTPRIAGRLLRRVRDFAEVAHAKT 240
           ED+  I+ R     A++     +     E+    +  +   A   L  +     ++    
Sbjct: 303 EDVARILLRAIDEEARVGNYPGSPLVDAELVTYLAAFSDGDARTALNLLELALSLSTRPE 362

Query: 241 ITREIADAALLRL-AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            T+E   A+L +    D+ G    D                   TISA     R +  D 
Sbjct: 363 ATKEDIKASLTKTLVYDRAGDQHYD-------------------TISAFHKAVRGSDPDA 403

Query: 300 IEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
              Y+ +       P    R ++ IA + +G+  
Sbjct: 404 ALYYLARMLQSGEDPLFVARRMVVIASEDVGLAD 437


>gi|257055554|ref|YP_003133386.1| recombination factor protein RarA [Saccharomonospora viridis DSM
           43017]
 gi|256585426|gb|ACU96559.1| Recombination protein MgsA [Saccharomonospora viridis DSM 43017]
          Length = 457

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 77/338 (22%), Positives = 120/338 (35%), Gaps = 57/338 (16%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
            V +       +RPR+L+E  GQ              +        VL  GPPG GKTTL
Sbjct: 27  EVPRNAPLAVRMRPRSLDEVVGQQHLLGPGAPLRRLVE--GATPASVLLYGPPGTGKTTL 84

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEE 123
           A +V+   G  F + S  + A   ++  ++     R        VLFIDE+HR S   ++
Sbjct: 85  ANLVSTATGRRFVALSA-LSAGVKEVRGVIEEARRRRQYDLEDTVLFIDEVHRFSKTQQD 143

Query: 124 ILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPL-----QDRFGI 176
            L  A+ED  + L+    E PS   V   LSR  ++          + L      D  G+
Sbjct: 144 ALLGAVEDRTVLLVAATTENPSFSVVAPLLSRSLVLRLHPLTDDDIDALVRRAVADERGL 203

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
              +     + +  +V+  A     A+T   A   A  + GT R+   ++    D A V 
Sbjct: 204 AGTVEV-TDDAVAHLVRLAAGDARRALTALEAAAEAATAVGTRRVDLAIVESTVDKAAVR 262

Query: 237 HAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAI 296
                              D+ G    D+                    SA +   R + 
Sbjct: 263 ------------------YDRDGDQHYDV-------------------TSAFIKSIRGSD 285

Query: 297 EDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
            D    Y+ +       PR   R L+  A + +G+  P
Sbjct: 286 VDAALHYLARMIEAGEDPRFIARRLIVHASEDIGMADP 323


>gi|303326761|ref|ZP_07357203.1| ATPase, AAA family [Desulfovibrio sp. 3_1_syn3]
 gi|302862749|gb|EFL85681.1| ATPase, AAA family [Desulfovibrio sp. 3_1_syn3]
          Length = 409

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 71/317 (22%), Positives = 117/317 (36%), Gaps = 55/317 (17%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
             +RP  + +F GQ      L+  ++A +     L  +LF GPPG GK+TLA ++A+  G
Sbjct: 9   ERMRPDDVAQFLGQSHLADRLRSLMQAKR-----LPSLLFFGPPGCGKSTLALLLAKSTG 63

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137
             +   S P       L  L   L   ++L +DE+HR S   ++   P +E  +L L+  
Sbjct: 64  KKYLRLSAPEAG----LQHLRRALAGVEILVLDELHRFSKAQQDFFLPLVESGELTLLAT 119

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
             E PS    +  LSR  ++                             +L  + +RGA+
Sbjct: 120 TTENPSFSVTRQLLSRLHVLRL---------------------RPLGRAELMQLARRGAQ 158

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257
              + + DE    +A  + G  R    L+  V    E        +      L+R   DK
Sbjct: 159 DLQVELNDEVLDLLAGVAHGDARSLLNLVEYVAALPEDKRDLEQIKAALPEVLVR--HDK 216

Query: 258 MGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR-- 315
            G    +L   + + ++  G  V                 D    Y+         PR  
Sbjct: 217 DGDSHYELA--SALIKSIRGSDV-----------------DAALYYLACLLEGGEDPRFV 257

Query: 316 GRLLMPIAWQHLGIDIP 332
            R L+  A + +G+  P
Sbjct: 258 CRRLILSASEDVGLADP 274


>gi|15894948|ref|NP_348297.1| recombination factor protein RarA [Clostridium acetobutylicum ATCC
           824]
 gi|15024632|gb|AAK79637.1|AE007676_7 Predicted ATPase related to the helicase subunit of the Holliday
           junction resolvase [Clostridium acetobutylicum ATCC 824]
 gi|325509085|gb|ADZ20721.1| recombination factor protein RarA [Clostridium acetobutylicum EA
           2018]
          Length = 421

 Score =  125 bits (315), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 61/328 (18%), Positives = 115/328 (35%), Gaps = 46/328 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP    E  GQ       K+     K  +  + +++F GPPG GKTT+A ++A+
Sbjct: 3   PLADRIRPENFNEVFGQKHIIGEGKILDRILK--SSLVPNMIFYGPPGTGKTTVANIIAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL-----EDRDVLFIDEIHRLSIIVEEILYPAMED 131
           +    F   +    A   D+  +  +       +  +L++DEI   +   ++ L   ME+
Sbjct: 61  KTNKAFYKLNA-TTASVKDVREITDSTNTLMGRNGVLLYLDEIQNFNKKQQQSLLEFMEN 119

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             + L+    E P        LSR T+            PL+    +        +    
Sbjct: 120 GSITLIASTTENPYFYVYNAILSRSTIFEF--------KPLESDELMKA------VNRAV 165

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT--ITREIAD 247
            +++   K T + +T++A       S G  R     +       +        I  E   
Sbjct: 166 ELIKDELKTTEIIITEDAKKYAVGVSSGDVRKTLNSIEIAVYSTKPNEEGNIFIDLETMK 225

Query: 248 AALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
               +     DK G +  D   L+   ++  G       +   +              +I
Sbjct: 226 ECTQKNVLNFDKDGDNHYD--ILSAFQKSIRGSDADAAVLYLAM--------------LI 269

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           + G ++   R RLL+  A + +G+  P 
Sbjct: 270 KGGDLKSICR-RLLVIAA-EDIGLAYPQ 295


>gi|326692254|ref|ZP_08229259.1| recombination factor protein RarA [Leuconostoc argentinum KCTC
           3773]
          Length = 427

 Score =  125 bits (315), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 67/323 (20%), Positives = 115/323 (35%), Gaps = 41/323 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP  +EE  GQ       K+      A+   L  ++  GPPG+GKT++A  +A 
Sbjct: 4   PLAYRMRPTKIEEIVGQQHLVGEGKIIWRMVAAK--RLSSMILYGPPGIGKTSIASAIAG 61

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR  +    ++    + A    +    VL +DEIHRL+ + ++ L P +E   + 
Sbjct: 62  SSKYAFRMLNAATDSQKDLQIVAEEAKMSGAVVLLLDEIHRLNKVKQDFLLPYLESGAII 121

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           L+    E P         SR  +    +          DR                    
Sbjct: 122 LIGATTENPYINVTPAIRSRTQIFQLESLTEADILSAVDR--------------ALADKT 167

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR--DFAEVAHAKTITREIADAALL 251
            G     + + + A  ++A  + G  R A   L         +      IT  I +  + 
Sbjct: 168 NGLGQYNVTLNETARQQLARATNGDLRSALNGLELAVLSTKPDDNQQIHITLPIIEETVQ 227

Query: 252 RLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           R A+  DK G    D+  ++ + ++  G  V              A+       +I+ G 
Sbjct: 228 RKALSADKDGDAHYDV--ISALQKSIRGSDVDA------------ALHYAAR--IIESGD 271

Query: 310 IQRTPRGRLLMPIAWQHLGIDIP 332
           I      R L  IA++ +G+  P
Sbjct: 272 IN--ILARRLTVIAYEDIGLANP 292


>gi|315635453|ref|ZP_07890719.1| ATPase [Arcobacter butzleri JV22]
 gi|315480211|gb|EFU70878.1| ATPase [Arcobacter butzleri JV22]
          Length = 431

 Score =  125 bits (315), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 77/324 (23%), Positives = 129/324 (39%), Gaps = 59/324 (18%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           + LRP +LE F GQ    S  K   +  K +   + H+ F G PG GKTTLA+++A+E+G
Sbjct: 6   NKLRPTSLETFVGQSHIISKDKALYKLIKQKD--IPHLFFYGKPGTGKTTLAKIIAKEIG 63

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
            ++   +   I K  DL  +    +    + ++FIDE+HRLS   +E+L P ME++   +
Sbjct: 64  TDYYYFNATSI-KVEDLRKVFDKYKGALIKPLIFIDEVHRLSKNQQEVLLPIMENYD-AI 121

Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA 196
           ++G              FT          LTN ++ R         +  +++  I+    
Sbjct: 122 IIGASTEN-------PFFT----------LTNAIRSRS-FLYEFKPFTKDEMNKILYIAL 163

Query: 197 KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAID 256
           K   + ++DEA   + + S G  R    LL      ++  +   +         LR  + 
Sbjct: 164 KDIDINISDEAKEYLIISSSGDARAMLTLLNFSYKVSKGINIDLLKE-------LRENVI 216

Query: 257 KMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ-------GF 309
             G    D  Y               +  SA +   R +  D    YM +         F
Sbjct: 217 GDGVSSSDTHY---------------DLASAMIKSLRGSNVDAALYYMARLINGGESVDF 261

Query: 310 IQRTPRGRLLMPIAWQHLGIDIPH 333
           I      R L+  A + +G   P+
Sbjct: 262 IT-----RRLVIFASEDIGNANPN 280


>gi|254514312|ref|ZP_05126373.1| AAA ATPase, central domain protein [gamma proteobacterium NOR5-3]
 gi|219676555|gb|EED32920.1| AAA ATPase, central domain protein [gamma proteobacterium NOR5-3]
          Length = 411

 Score =  125 bits (315), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 61/314 (19%), Positives = 105/314 (33%), Gaps = 51/314 (16%)

Query: 29  EFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG- 87
           +  GQ    +  K        + E L  ++  GPPG+GKTTLAQ++           S  
Sbjct: 2   DVVGQTHLLAEGKPLSRC--LQGEPLHSMILWGPPGVGKTTLAQLLCDASDSRMLKLSAV 59

Query: 88  ----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEG 141
                 I +A  +         + VLF+DE+HR +   ++   P +E+  L L+    E 
Sbjct: 60  MDGVKAIREAVAVGEAERASGRQCVLFVDEVHRFNKSQQDAFLPFVENGTLTLIGATTEN 119

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P+       LSR  +    +                       +++L  I+ RG    GL
Sbjct: 120 PAFELNSALLSRARVYRLRS---------------------LSVDELVMILHRGEIEVGL 158

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            + D     +A+ + G  R    LL         +                  +D   F+
Sbjct: 159 ELNDLQRQRLALAADGDARRVLNLLELAASLKAESG----------------RLDDAAFE 202

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP--RGRLL 319
           ++         R    G    + ISA     R +  D    +  +       P    R +
Sbjct: 203 EV---MQGSPRRFDKNGDNFYDQISALHKAVRGSSPDAALYWYCRMLDGGCDPLYLARRV 259

Query: 320 MPIAWQHLGIDIPH 333
           + +A + +G   P 
Sbjct: 260 IRMASEDIGNADPR 273


>gi|160947516|ref|ZP_02094683.1| hypothetical protein PEPMIC_01450 [Parvimonas micra ATCC 33270]
 gi|158446650|gb|EDP23645.1| hypothetical protein PEPMIC_01450 [Parvimonas micra ATCC 33270]
          Length = 428

 Score =  125 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 64/326 (19%), Positives = 117/326 (35%), Gaps = 43/326 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+ L  F GQ     N  V     K        ++  GPPG GKT+LA +++ 
Sbjct: 17  PLAERMRPKDLSFFIGQDNIIKNNSVLKNMIK--NNRFSSMILYGPPGSGKTSLANIISS 74

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAM 129
               N+      V +   ++  ++   +D       R +LFIDEIHR + + ++ L   +
Sbjct: 75  TTD-NYFVKISAVTSGTKEIKEIIELAKDNLSMYNKRTILFIDEIHRFNKMQQDYLLEFV 133

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E   +  +    E P+       LSR  +             + D             E 
Sbjct: 134 EKGDIIFIGATTENPAYEVNNALLSRVIVFELQALSFENLKDIIDN-------AILNDEF 186

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           LK           ++ T++    +   S G  R A   L  + D  E +  K I+     
Sbjct: 187 LKN--------KKISYTEDGISYLIKMSNGDARTALNYLELIIDNLE-SEDKVISEYKIR 237

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
             L ++ +    +D+   ++   I+         I+++  G     DA+   +   +I  
Sbjct: 238 NILDKVKVY---YDKNSDKHYNFIS-------AFIKSMRIG---DPDAVVYYLASMLISG 284

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
             I      R ++  A + +G   P+
Sbjct: 285 EDINFI--ARRMIIFASEDIGNANPN 308


>gi|72162480|ref|YP_290137.1| recombination factor protein RarA [Thermobifida fusca YX]
 gi|71916212|gb|AAZ56114.1| Recombination protein MgsA [Thermobifida fusca YX]
          Length = 441

 Score =  125 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 72/328 (21%), Positives = 117/328 (35%), Gaps = 49/328 (14%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +     +RPRTL+E  GQ              +   +A   +L  GPPG GKTTLA VV+
Sbjct: 18  EPLAVRMRPRTLDEVVGQRHLLGEGSPLRRLVE--DDAPMALLLWGPPGTGKTTLATVVS 75

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPA 128
           R     F   S  V +   D+  ++              +LF+DE+HR S   ++ L PA
Sbjct: 76  RATRRRFVELSA-VTSGVKDIRDVVDEARRELGMRGVHTLLFVDEVHRFSKTQQDALLPA 134

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           +E+  +  +    E P    +                            + + L+ +  +
Sbjct: 135 VENRWVSFIGATTENPFFSVISP---------------------LLSRSLLLTLHAHSDD 173

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           D++T+V+R               E A+      R+AG   RR   + E A      R   
Sbjct: 174 DIRTVVRRALTDERGLAGRYTLTEEAL--HHLVRLAGGDARRSLTYLEAAALVAGDRTEI 231

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
             A +  A D+               R    G    + +SA +   R +  D    Y+ +
Sbjct: 232 TVADVERAADR------------TAVRYDRSGDQHYDVVSAFIKSMRGSDVDAALHYLAR 279

Query: 307 QGFIQRTPR--GRLLMPIAWQHLGIDIP 332
                  PR   R L+  A + +G+  P
Sbjct: 280 MIEAGEDPRFIARRLVVHASEDVGMADP 307


>gi|160934386|ref|ZP_02081773.1| hypothetical protein CLOLEP_03258 [Clostridium leptum DSM 753]
 gi|156867059|gb|EDO60431.1| hypothetical protein CLOLEP_03258 [Clostridium leptum DSM 753]
          Length = 491

 Score =  125 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 72/334 (21%), Positives = 122/334 (36%), Gaps = 59/334 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP+T+++  GQ       K      ++    + +++F GP G+GKTTLA ++AR
Sbjct: 71  PLADRLRPKTIDDMVGQRHLLGPGKALRRIIESGE--IPNLIFYGPSGVGKTTLASIIAR 128

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAME 130
           +     R  +G   A   DL  + T  E      +  +L++DEI   +   ++ L   +E
Sbjct: 129 QTNRALRKLNG-TTAGTADLREIFTEAENTFTAPNGILLYLDEIQYFNKKQQQTLLEFIE 187

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + ++ L+    E P        LSR T+    T                      E  ++
Sbjct: 188 NGKITLIASTTENPYFYVYNAILSRSTVFEFKTV---------------------EKAEV 226

Query: 189 KTIVQRGAKLTGLAVTDEAACEI------AMRSRGTPRIAGRLLRR-VRDFAEVAHAKTI 241
              V+R   L      +    E       A+   G  R A   +   V         + I
Sbjct: 227 AKAVERAFSLLEEERGEGFQIEDGVVGHIALACGGDVRKAMNSVELCVLSSPAADGVRKI 286

Query: 242 TREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           T E A     + A   DK G +  D   L+   ++  G            S+P  A+  L
Sbjct: 287 TLETAKELTQKSALRYDKDGDEHYD--LLSAFQKSMRG------------SDPDAAVHYL 332

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
               +++ G +      R LM  A + +G+  P 
Sbjct: 333 AR--LLEAGDLPSVC--RRLMVTACEDVGLAYPQ 362


>gi|189500549|ref|YP_001960019.1| recombination factor protein RarA [Chlorobium phaeobacteroides BS1]
 gi|189495990|gb|ACE04538.1| AAA ATPase central domain protein [Chlorobium phaeobacteroides BS1]
          Length = 445

 Score =  125 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 81/346 (23%), Positives = 131/346 (37%), Gaps = 55/346 (15%)

Query: 3   DREGLLSRNVSQE--DADISLLRPRTLEEFTGQVEACS---NLKVFIEAAKARAEALDHV 57
           D  GL SR  +           RPR L++  GQ         L+ FI   +     L  +
Sbjct: 10  DLFGLPSRGKADPGFQPLAERARPRNLDDMYGQEHLIGAEGPLRKFIAQGR-----LPSM 64

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGP-----VIAKAGDLAALLTNLED-RDVLFI 111
           +F GPPG GKTTLA++ A  L   F S S        + K+ +LAA    L+  R +LFI
Sbjct: 65  IFWGPPGSGKTTLAEICANSLDFRFDSLSAVDAGVREVRKSLELAASAQRLDGLRTLLFI 124

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DEIHR +   ++ L  A+E   + L+    E PS       +SR  +         + N 
Sbjct: 125 DEIHRFNKAQQDSLLHAIEQGVVVLIGATTENPSFEVNAALMSRMQV--------YVLNA 176

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRG-AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
           L+D               L+ +V+   A    +A  +    + A   + +   A + L  
Sbjct: 177 LED-------------AALQAVVRCALAGDPLIAPYEVVIDDWAFLLQFSAGDARKALNA 223

Query: 229 VRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAG 288
           V     +    T+   ++   L R+   K      D +           G    + ISA 
Sbjct: 224 VEAALSMVDLSTVPVHLSRTLLERVLQKK--LPVYDKK-----------GASHYDVISAF 270

Query: 289 LSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           +   R +  D    ++ +       P+   R ++  A + +G   P
Sbjct: 271 IKSLRGSDPDAALFWLARMLDGGEDPKFIARRMVIFASEDVGNADP 316


>gi|256850208|ref|ZP_05555637.1| recombination factor protein RarA [Lactobacillus crispatus
           MV-1A-US]
 gi|256712845|gb|EEU27837.1| recombination factor protein RarA [Lactobacillus crispatus
           MV-1A-US]
          Length = 420

 Score =  125 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 73/321 (22%), Positives = 119/321 (37%), Gaps = 43/321 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+TL +  GQ E     K      K        +L  GPPG GKT+LAQ++A+
Sbjct: 6   PIAEQMRPQTLADMVGQSELLGPGKALRNIIKQHVNI--SLLLWGPPGTGKTSLAQIIAK 63

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           E    F S +  +  KA  L  ++   + +  VL IDEIHR++  +++ L P +E+  + 
Sbjct: 64  ENDYPFASFNASIDNKA-QLNNIINAYKYQTLVLLIDEIHRMTKNLQDFLLPYLENGHVL 122

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           L+    E P    V    SR  +           NPL +     +         L     
Sbjct: 123 LVGSTTENPIMSIVPAVRSRCQIFEF--------NPLTEDDIAAV---------LNKACT 165

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           +  KL    V   +   IA  + G  RIA  +L  V       + K IT     +   + 
Sbjct: 166 KVLKLVDHQVEKNSLNLIAAAADGDLRIALNILETVHAL----NPKKITLANVKSFTKQQ 221

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
                        YL   + +  G     +T +A                +++ G +   
Sbjct: 222 FFSYDKKTTKHYDYLAAYSDSMAGS----DTDAAL----------YYLAILLKNGDLASV 267

Query: 314 PRGRLLMPIAWQHLGIDIPHR 334
              R L  I + ++G+  P +
Sbjct: 268 V--RRLREIPYTYIGLANPQQ 286


>gi|256391570|ref|YP_003113134.1| recombination factor protein RarA [Catenulispora acidiphila DSM
           44928]
 gi|256357796|gb|ACU71293.1| AAA ATPase central domain protein [Catenulispora acidiphila DSM
           44928]
          Length = 463

 Score =  125 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 74/357 (20%), Positives = 123/357 (34%), Gaps = 65/357 (18%)

Query: 2   MDREGLLSRNVSQEDADIS----LLRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEAL 54
           M++  L     +++  + +     +RPR L E  GQ       S L   +E         
Sbjct: 1   MEQLDLFEEAGTEKARNAAPLAVRMRPRVLGEIVGQKHLLRAGSPLWRLVETGDG-VTVP 59

Query: 55  DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------D 107
             +L  GPPG GKTTLA V+A      F   S  + A   ++ A++   +          
Sbjct: 60  SSILLWGPPGTGKTTLAYVLANATERTFAELSA-INAGVKEVRAVVERAKRELGMYGRET 118

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSV-----KINLSRFTLIAAT 160
           +LF+DEIHR S   ++ L PA+E+  + L+    E P    +     +  L     +   
Sbjct: 119 LLFLDEIHRFSKAQQDSLLPAVENRWVTLVAATTENPHFSIISPLLSRSLLLTLQPLTED 178

Query: 161 TRVGLLTNPLQDRFGI--PIRLNFYEIEDLKTIVQRGA-KLTGLAVTDEAACEIAMRSRG 217
               ++   L+D  G+   + L     E L  I    A +         A    A +  G
Sbjct: 179 DVREVIHRALEDERGLDGKVALPQDSEEHLLRIAGGDARRALTALEAGAAGALAAAKGDG 238

Query: 218 TPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGG 277
              +   ++ +  D A V                    D+ G    D+            
Sbjct: 239 PAELTLEIMEQAVDRAAVR------------------YDRDGDQHYDVA----------- 269

Query: 278 GPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
                   SA +   R +  D    Y+ +       PR   R L+  A + +G+  P
Sbjct: 270 --------SAFIKSVRGSDVDAALHYLARMVDAGEDPRFIARRLVISASEDIGMADP 318


>gi|332019575|gb|EGI60054.1| ATPase WRNIP1 [Acromyrmex echinatior]
          Length = 393

 Score =  125 bits (315), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 59/337 (17%), Positives = 109/337 (32%), Gaps = 46/337 (13%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR-----EL 78
           P  +E + GQ +      V     +     +  ++F GPPG GKT+LA ++A        
Sbjct: 3   PMNIEAYVGQKQIIGPNTVLNYLLEKGE--IPSMIFWGPPGCGKTSLANIIACLSRKLTS 60

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDF 132
                       +    +   +T  +D      R ++F+DEIH  + + ++I  P +E  
Sbjct: 61  NNVHIVNLSAASSGVKSIKDAVTMAKDKSKFGCRTIVFMDEIHCFNKLQQDIFLPHIEIG 120

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAAT-----TRVGLLTNPLQDRFGIPIRLNFYEI 185
              L+    E P        LSR  +             +L   L+   G  +     EI
Sbjct: 121 TFTLIGCTTENPFYSLNPALLSRCRMFVLNKLTECNVTEILHKALEYINGRMLDQEKEEI 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK------ 239
            + + I           V +     +A    G  R+A   L       +V  +K      
Sbjct: 181 INREQIKFYSNTKLKYHVDNNTIQWLAGACDGDARVALNALELATLATQVDESKTSRNND 240

Query: 240 -TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
            TIT E     L++                + + ++   G                   +
Sbjct: 241 ITITLEDIKKGLIKTHTLSEKEANQSHHIYSALHKSIRAGKT-----------------N 283

Query: 299 LIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
               ++ +    +  P    R L+ I+ + +G+  P 
Sbjct: 284 ASLYWLARIMAAKEDPVNIARRLVRISSEDIGLADPD 320


>gi|220912773|ref|YP_002488082.1| recombination factor protein RarA [Arthrobacter chlorophenolicus
           A6]
 gi|219859651|gb|ACL39993.1| AAA ATPase central domain protein [Arthrobacter chlorophenolicus
           A6]
          Length = 466

 Score =  125 bits (315), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 73/327 (22%), Positives = 115/327 (35%), Gaps = 43/327 (13%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFI----EAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
            +RPRTL++  GQ                A  A       ++  GPPG GKTTLA V+AR
Sbjct: 36  RMRPRTLDDVVGQQHLLGQGSPLRLLAAGADAAGPAGPSSLILWGPPGTGKTTLAHVIAR 95

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAM 129
             G  F   S  + A   D+  ++ +        +   VLF+DEIHR +   ++ L P +
Sbjct: 96  GPGRKFVELSA-ITAGVKDVRRVMDDALTARDLYKTTTVLFLDEIHRFNKAQQDALLPGV 154

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E+  + L+    E PS   V            +  + L   PL D              D
Sbjct: 155 ENRWVVLVAATTENPSFSVV--------SPLLSRSLLLTLKPLTD-------------AD 193

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           ++ ++ R   +      D  A           R++G   RR     E A A     +  D
Sbjct: 194 IEGLLSRA--VADPRGLDGKAELAPEALAHLVRLSGGDARRALTALEAA-AGVAFGDADD 250

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           A         +     +        R    G    +  SA +   R +  D    Y+ + 
Sbjct: 251 A---ETGPVTVELKHTERALDVAAVRYDRAGDQHYDVASAFIKSIRGSDVDAALHYLARM 307

Query: 308 GFIQRTPR--GRLLMPIAWQHLGIDIP 332
                 PR   R ++  A + +G+  P
Sbjct: 308 LEAGEDPRFVARRIVISAAEDVGMADP 334


>gi|170761682|ref|YP_001787888.1| recombination factor protein RarA [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169408671|gb|ACA57082.1| ATPase, AAA family [Clostridium botulinum A3 str. Loch Maree]
          Length = 416

 Score =  125 bits (314), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 73/332 (21%), Positives = 125/332 (37%), Gaps = 60/332 (18%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
               L+RP+ LE+F GQ    S  K      K   +++ + +F GPPG GKTTLA ++A 
Sbjct: 3   PLADLMRPKKLEDFVGQKHILSENKPLYNLMK--NKSICNSIFYGPPGTGKTTLANIMAN 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED-----RDVLFIDEIHRLSIIVEEILYPAMED 131
            +   F   +    A   D+  + +++         VL+IDE+   +   ++ L   +ED
Sbjct: 61  YVDKKFYRLNA-TTASIKDIQEITSSINSLLNYSGVVLYIDELQHFTKKQQQALLEFIED 119

Query: 132 FQLDLM--VGEGPSARSVKINLSRF--TLIAATTRVGLLT------NPLQDRFGIPIRLN 181
            ++ L+    E P     K  LSR          R  ++       N L D+ GI I+ +
Sbjct: 120 GRVILIASTTENPYFVIHKAILSRCNIFQFKPLNREDIILGLEKAINKLIDK-GINIKYS 178

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           F  +E +  I Q                       G  R A  +L    +     + +  
Sbjct: 179 FESLEYIGEICQ-----------------------GDYRKAYNILELAVNSHCGFNIEIT 215

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
              I   A   +  D  G +  +   L+   ++  G            S+   A+  L  
Sbjct: 216 LDYIESLAQSNIRADATGDEYYN--ILSAFQKSIRG------------SDADAAVHYLAR 261

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
             +I+ G I  T   R L  +  + +G+  P+
Sbjct: 262 --LIKSGDI--TSITRRLSVMVAEDIGLAYPN 289


>gi|89891667|ref|ZP_01203170.1| ATPase related to the helicase subunit of the holliday junction
           resolvase [Flavobacteria bacterium BBFL7]
 gi|89516002|gb|EAS18666.1| ATPase related to the helicase subunit of the holliday junction
           resolvase [Flavobacteria bacterium BBFL7]
          Length = 431

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 64/331 (19%), Positives = 116/331 (35%), Gaps = 56/331 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+ L E+  Q           +        +  ++  GPPG GKTTLA ++A+
Sbjct: 5   PLAERIRPQNLSEYLSQNHLVGERGTLRQHIL--NGTIPSLILWGPPGTGKTTLANIIAQ 62

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE--------DRDVLFIDEIHRLSIIVEEILYPA 128
           E    F + S  + +   D+  ++   +           +LFIDEIHR S   ++ L  A
Sbjct: 63  ESKRPFYTLSA-INSGVKDVREVIDKAKSAGGLFTAKNPILFIDEIHRFSKSQQDSLLAA 121

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           +E   + L+    E PS   +   LSR  +               D F         ++E
Sbjct: 122 VEKGWVTLIGATTENPSFEVIPALLSRCQVYVL------------DAFAKA------DLE 163

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMR-SRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
            L     +  ++  +        E  +R S G  R    +   V + ++ +    IT E+
Sbjct: 164 QLLHRALKIDEVLSIKDITIQETEALLRISGGDARKLLNIFELVIN-SQPSGPIVITNEL 222

Query: 246 ADAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
               +       DK G    D+                   ISA +   R +  +    +
Sbjct: 223 VFEQVQSNPARYDKTGEQHYDI-------------------ISAFIKSIRGSDPNAAVYW 263

Query: 304 MIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           + +        +   R ++ +A + +G   P
Sbjct: 264 LARMIEGGEDLKFIARRMLILASEDIGNANP 294


>gi|218885443|ref|YP_002434764.1| recombination factor protein RarA [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218756397|gb|ACL07296.1| AAA ATPase central domain protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 408

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 74/318 (23%), Positives = 111/318 (34%), Gaps = 55/318 (17%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
             +RP TL+ F GQ      +     AA  RAE L  +L  GPPG GK+TLA ++A   G
Sbjct: 9   ERIRPSTLDGFVGQTHLTPRI-----AALLRAERLPSLLLFGPPGCGKSTLALLLANAHG 63

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137
                 S P       L  L  +L   DVL +DE+HR S   ++   P +E  ++ ++  
Sbjct: 64  TKVLRLSAPEAG----LQQLRRSLSGVDVLVLDELHRFSKAQQDFFLPILESGEITMIAT 119

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
             E PS    +  LSR  ++                            E+L  + +RG  
Sbjct: 120 TTENPSFSVTRQLLSRLHVMRL---------------------RPLGREELMELGRRGGT 158

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257
                +TD+    ++  S G  R    L+  V             R       +    DK
Sbjct: 159 AQEAPLTDDVLDFLSGMSHGDARAMLNLVEYVAGLPAENRGLDGVRAAMPE--IVSRHDK 216

Query: 258 MGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR-- 315
            G    +L                    SA +   R +  D    Y+         PR  
Sbjct: 217 DGDSHYELA-------------------SALIKSIRGSDPDAALYYLACLLEGGEDPRFV 257

Query: 316 GRLLMPIAWQHLGIDIPH 333
            R L+  A + +G+  P 
Sbjct: 258 CRRLILSASEDVGLADPQ 275


>gi|256829632|ref|YP_003158360.1| AAA ATPase central domain-containing protein [Desulfomicrobium
           baculatum DSM 4028]
 gi|256578808|gb|ACU89944.1| AAA ATPase central domain protein [Desulfomicrobium baculatum DSM
           4028]
          Length = 430

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 70/327 (21%), Positives = 127/327 (38%), Gaps = 59/327 (18%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           V+Q+      LRP +L++F GQ      L+  +++     + L  +L  GPPG GK+T+A
Sbjct: 15  VAQKRPLAESLRPESLDDFIGQSHFRQRLRTLMQS-----KDLPSLLLFGPPGCGKSTVA 69

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            ++A+     F   S P +     + AL   ++D+++L +DE+HR S   ++   P +E 
Sbjct: 70  LLLAKHADKPFVRVSAPEVG----ITALRKQIQDKEILILDELHRYSKAQQDFFLPLLET 125

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
            +L L+    E PS    +  LSR  ++   +                       + +L 
Sbjct: 126 GELTLIATTTENPSFSVTRQLLSRLHVLRLRS---------------------LGMAELV 164

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            + +RG +     + +++   +A  S G  R    L+     FA     K +  +     
Sbjct: 165 DVGKRGMEKLDSLIPEKSLELLATLSGGDARTMLNLVE----FAAGLEEKDLEPDQLKTR 220

Query: 250 LLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           L  +    D+ G    +L                    SA +   R +  D    Y+   
Sbjct: 221 LPEIVLRGDREGDSHYELA-------------------SALIKSIRGSDPDAALYYLASL 261

Query: 308 GFIQRTPR--GRLLMPIAWQHLGIDIP 332
                 PR   R L+  A + +G+  P
Sbjct: 262 VETGEDPRFICRRLILSAAEDVGLGDP 288


>gi|257126269|ref|YP_003164383.1| recombination factor protein RarA [Leptotrichia buccalis C-1013-b]
 gi|257050208|gb|ACV39392.1| AAA ATPase central domain protein [Leptotrichia buccalis C-1013-b]
          Length = 409

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 59/339 (17%), Positives = 115/339 (33%), Gaps = 59/339 (17%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            L       +       RP++L++F GQ        +  +  +       + +F G PG 
Sbjct: 2   NLFDEVYEDKKPLAFRYRPKSLDDFYGQKRLVGENGILRKIIERGN--FMNAIFWGAPGT 59

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLS 118
           GKTTLA++++ ++  ++   +  + A   D+  +     +R        +LF+DEIHR +
Sbjct: 60  GKTTLAEIISNKMNYHYEYLNA-IKASVADIKEISEKAANRFHMNGQQTLLFLDEIHRFN 118

Query: 119 IIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
            + ++ L   +E+  + L+    E P        LSR                      +
Sbjct: 119 KLQQDSLLQDLENGNIILIGATTENPYYNLNNALLSRC---------------------L 157

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
                    ++L  I++   +     ++D+    I+    G  R A  +L  + +     
Sbjct: 158 AFEFKKLSEKNLMEILKNINEKENFGISDDILEYISEIIEGDARQAINILELITNVGV-- 215

Query: 237 HAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAI 296
                T E     L          D+                     TISA +   R + 
Sbjct: 216 ---EFTLEEVKEILNTKKSYHKTEDKY-------------------NTISAMIKSIRGSD 253

Query: 297 EDLIEPYMIQQGFIQRT--PRGRLLMPIAWQHLGIDIPH 333
            D    +M +            R L+ +A + +G+  P 
Sbjct: 254 PDATVYWMAKMLSGGEDILYIARRLVILASEDIGLANPQ 292


>gi|269126366|ref|YP_003299736.1| AAA ATPase central domain-containing protein [Thermomonospora
           curvata DSM 43183]
 gi|268311324|gb|ACY97698.1| AAA ATPase central domain protein [Thermomonospora curvata DSM
           43183]
          Length = 463

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 74/336 (22%), Positives = 115/336 (34%), Gaps = 55/336 (16%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           +       +RPR L+E  GQ           +      +A   ++  GPPG GKTTLA V
Sbjct: 30  ERQPLAVRMRPRGLDEVIGQEHLLGPGTPIRQLVDR--DAPMSLVLWGPPGTGKTTLAYV 87

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILY 126
           VA      F   S  V      + A +            + VLF+DE+HR +   ++ L 
Sbjct: 88  VAGVTRRRFVEISA-VSDGVKKVRAEIETARRELGMTGRQTVLFVDEVHRFNKAQQDALL 146

Query: 127 PAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           PA+E+  +  +    E P    +            +  + L   PL ++    +      
Sbjct: 147 PAVENRWVSFIGATTENPFFSVI--------SPLLSRSLLLTLQPLSEQDLRRVIERALT 198

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
                    RG     +A+TDEAA  +   + G  R A   L      A    A      
Sbjct: 199 D-------ARGLGG-AVALTDEAADHLVRLAGGDARRALTYLEAAALVAGAGRADAAKAT 250

Query: 245 IADAALLR------LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
           I  A L +      +  D+ G    D+                   ISA +   R +  D
Sbjct: 251 IDVAVLEKAVDRAAVRYDRDGDQHYDV-------------------ISAFIKSIRGSDVD 291

Query: 299 LIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
               Y+ +       PR   R L+  A + +G+  P
Sbjct: 292 AALHYLARMLEAGEDPRFIARRLIVHASEDVGMADP 327


>gi|189199446|ref|XP_001936060.1| DNA-dependent ATPase MGS1 [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187983159|gb|EDU48647.1| DNA-dependent ATPase MGS1 [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 534

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 64/330 (19%), Positives = 106/330 (32%), Gaps = 62/330 (18%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP +LE   GQ        +    A      L  ++  G PG GKTT+A+++A 
Sbjct: 118 PLAERMRPMSLEHVYGQE-LVGPKGILR--AMVDEGRLPSMVLWGRPGTGKTTIARLIAN 174

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAM 129
             G  F   +     +   + A+ T           + ++F DE+HR S   ++     +
Sbjct: 175 TSGSRFVEINS-TSTRLEQVRAIFTEASQDLRLTGRKTIVFCDELHRFSKTQQDAFLGPV 233

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E   + L+    E PS + +   LSR                                +D
Sbjct: 234 ESGTITLIAATTENPSFKIISALLSRCRTFTLDDLK---------------------EDD 272

Query: 188 LKTIVQRGAKLTGLAV---TDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           L  I++R                    A  S G  R A  LL      A   +   +T+E
Sbjct: 273 LVKILERAMTAESCTSPILDKPMLAYFARFSDGDARTALNLLELAMSLA---NQPDMTKE 329

Query: 245 IADAALLRL-AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
               +L +    D+ G    D                   +ISA     R +       Y
Sbjct: 330 KIQQSLTKTLVYDRAGDQHYD-------------------SISALHKSIRGSDPHASLYY 370

Query: 304 MIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
           + +       PR   R L+ +A + +G+  
Sbjct: 371 LARMLESGEDPRYIARRLIVVASEDVGLAD 400


>gi|225010505|ref|ZP_03700976.1| AAA ATPase central domain protein [Flavobacteria bacterium
           MS024-3C]
 gi|225005334|gb|EEG43285.1| AAA ATPase central domain protein [Flavobacteria bacterium
           MS024-3C]
          Length = 425

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 62/331 (18%), Positives = 109/331 (32%), Gaps = 52/331 (15%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            +     +RP++LE +  Q        V  +  KA    +  ++  GPPG GKTTLA ++
Sbjct: 2   NEPLAERVRPKSLEGYMSQTHLVGPAGVLTKQIKA--GIIPSIILWGPPGTGKTTLANII 59

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLED--------RDVLFIDEIHRLSIIVEEILY 126
           A +    F + S  + +   ++  ++   +           +LFIDEIHR S   ++ L 
Sbjct: 60  AAQTERPFYALSA-INSGVKEVREVIEKAKQSGGLFTTKNPLLFIDEIHRFSKSQQDSLL 118

Query: 127 PAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
            A+E   + L+    E PS       LSR  +             L     I I     E
Sbjct: 119 AAVEKGWVTLIGATTENPSFEVNAALLSRCQVYTLKAFEKSDLEALL-NNAIKIDPWLQE 177

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            E              + + +  A   A  S G  R    +   +               
Sbjct: 178 KE--------------ITLKETNALFRA--SGGDARKLLNIFEFLVTQNPDKKVVITDEF 221

Query: 245 IADAALLRLA-IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           +        A  DK G    D+                   +SA +   R +  +    +
Sbjct: 222 VTSNTQNNTAFYDKSGEQHYDI-------------------VSAFIKSIRGSDPNAAVYW 262

Query: 304 MIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           + +        +   R ++ +A + +G   P
Sbjct: 263 LARMIVGGEDVKFIARRMVILASEDIGNANP 293


>gi|84496693|ref|ZP_00995547.1| conserved ATP/GTP binding protein [Janibacter sp. HTCC2649]
 gi|84383461|gb|EAP99342.1| conserved ATP/GTP binding protein [Janibacter sp. HTCC2649]
          Length = 457

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 83/338 (24%), Positives = 122/338 (36%), Gaps = 65/338 (19%)

Query: 21  LLRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
            +RP +++E  GQ       S L+  IE +   A +L   +  GPPG GKTTLA +VA  
Sbjct: 26  RMRPASIDEVRGQDAVLRPGSPLRRLIEGSGGTAGSL-SAILWGPPGTGKTTLAHLVATA 84

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAME 130
               F   S  V A   D+ A++          + + VLF+DEIHR +   ++ L P +E
Sbjct: 85  ANREFVELSA-VTAGVKDVRAVMEAAARNRDLYDRQTVLFLDEIHRFTKAQQDALLPGVE 143

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTR-----VGLLTNPLQDRFGIPIRLNFY 183
             Q+ L+    E PS   +   LSR  LI  T+        +L + + D  G+       
Sbjct: 144 TRQVILVAATTENPSFSVIAPLLSRSMLITLTSLDDAQVAEVLDSAVTDARGLDAAYALS 203

Query: 184 EI--EDLKTI----VQRGAKLTGLAVTDEAACEIAMRSRGTP-RIAGRLLRRVRDFAEVA 236
               E L  I     +R       A         A RS  TP  I      +    A V 
Sbjct: 204 SEAREHLVRISGGDARRALTSLEAAAGVALDDAPAGRSDDTPIEITLAHAEQAVAQASVR 263

Query: 237 HAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAI 296
                              DK G    D+                    SA +   R + 
Sbjct: 264 ------------------YDKTGDQHYDVA-------------------SAFIKSMRGSD 286

Query: 297 EDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
            D    Y+ +Q      PR   R ++  A + +G+  P
Sbjct: 287 VDAALHYLARQLEAGEDPRFIARRIVISASEDVGMGDP 324


>gi|291277124|ref|YP_003516896.1| helicase-like protein [Helicobacter mustelae 12198]
 gi|290964318|emb|CBG40168.1| helicase-like protein [Helicobacter mustelae 12198]
          Length = 394

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 79/318 (24%), Positives = 124/318 (38%), Gaps = 46/318 (14%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
            SLLRP++ ++F GQ    S   VF    ++      H  F GPPG+GKTTLA++VA+EL
Sbjct: 5   ASLLRPKSFKDFVGQEHLFSKDSVFSRVLESGH--FPHSFFYGPPGVGKTTLARIVAKEL 62

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
            + F   +G   A    L   L   ++   + V+FIDE+HRLS   +E L P ME+ Q  
Sbjct: 63  EMPFLEFNGVDFA-LESLRCALKEYKNTLIKPVVFIDEVHRLSKNQQEFLLPVMENHQ-A 120

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           +++G                         +LTN L+ R  I + L+  +   L+ I+Q+ 
Sbjct: 121 IILGASTQNP-----------------FSILTNALRSRS-ILLELHPLKSHHLREILQKA 162

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255
             L    +T +A   +   S G  R    LL    D A  A   T+    +         
Sbjct: 163 LDLYPCKITSDARVYLMDSSNGDARAMLHLL----DIAMQADEITLPLLKSIRPFRLGEG 218

Query: 256 DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR 315
                    L   + + ++  G  V                 + I               
Sbjct: 219 SSEQDTHYHLA--SAMIKSIRGSDVDASIYYLARLIASGENPEFI--------------- 261

Query: 316 GRLLMPIAWQHLGIDIPH 333
            R L+ +A + +G   P+
Sbjct: 262 ARRLVILASEDIGNANPN 279


>gi|289643078|ref|ZP_06475209.1| AAA ATPase central domain protein [Frankia symbiont of Datisca
           glomerata]
 gi|289507122|gb|EFD28090.1| AAA ATPase central domain protein [Frankia symbiont of Datisca
           glomerata]
          Length = 526

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 77/342 (22%), Positives = 115/342 (33%), Gaps = 52/342 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + LRPRTL+E  GQ              +        VL  GPPG GKTTLA +++ 
Sbjct: 17  PLAARLRPRTLDELVGQRHLLGAGSPLRRLVEGGGTT--SVLLWGPPGSGKTTLAHIISG 74

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAM 129
             G  FR  S  V A   D+ A++    D       R VLFIDE+HR +   ++ L PA+
Sbjct: 75  SGGRRFRELSA-VTAGVKDVRAVIDQARDTLAVSGVRTVLFIDEVHRFTRTQQDALLPAV 133

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E+  + L+    E P    V   LSR  L+                            +D
Sbjct: 134 ENGLVTLVAATTENPFFSVVAPLLSRSLLLTLEPLT---------------------EDD 172

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           L+ +VQR                         R+AG   RRV    + A    +      
Sbjct: 173 LRVLVQRALD--DRRGYGGRLTIDTDAVTHLLRLAGGDARRVLTALQAAGDAVLAAAATA 230

Query: 248 AALLRLAID---------------KMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEP 292
                                   ++    L+        R    G    +  SA +   
Sbjct: 231 GPGPAATAAAGTGGDGSGAGRPPVRIDLATLERAVNRAAVRYDRAGDQHYDVSSALIKSV 290

Query: 293 RDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           R +  D    Y+ +       PR   R ++ +A + +G+  P
Sbjct: 291 RGSDVDAALHYLARMLEAGEDPRFVARRMIILASEDVGLAEP 332


>gi|323359961|ref|YP_004226357.1| ATPase [Microbacterium testaceum StLB037]
 gi|323276332|dbj|BAJ76477.1| ATPase [Microbacterium testaceum StLB037]
          Length = 469

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 70/327 (21%), Positives = 112/327 (34%), Gaps = 19/327 (5%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAA---KARAEALDHVLFVGPPGLGKTTLAQVVARE 77
            +RP +L+E  GQ          +  A    + + +   V+  GPPG GKTTLAQ +AR 
Sbjct: 17  RMRPTSLDEVAGQGHLLRPGSPLVTLATTDSSASGSAVSVILWGPPGTGKTTLAQAIARS 76

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAME 130
            G  F   S  + A   D+  ++              +LF+DEIHR +   ++ L P +E
Sbjct: 77  SGRRFVELSA-ITAGVKDVREVMQEALTQRDLYGQSTILFLDEIHRFTKAQQDALLPGVE 135

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +  + L+    E PS   +   LSR  L+            L DR  +           L
Sbjct: 136 NGWVVLIAATTENPSFSVISPLLSRSLLLTLRPLGDDDLGALVDR-AVTDPRGLAGRVVL 194

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
               +             A   +   +      AG       +  EV        +   A
Sbjct: 195 DDDARAALVRLASGDARRALTALEAAASVAGDDAGH---AAPNATEVEDEDDPDADDPAA 251

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
                    +  D +       + R    G    + ISA +   R +  D    Y+ +  
Sbjct: 252 EAEIAEPPVITADHIAQAVDRALLRYDRQGDEHYDVISAFIKSVRGSDPDAAIHYLARMI 311

Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIPH 333
                PR   R L+  A + +G+  P 
Sbjct: 312 EAGEDPRFIARRLVISAAEDIGMADPQ 338


>gi|242211508|ref|XP_002471592.1| predicted protein [Postia placenta Mad-698-R]
 gi|220729364|gb|EED83240.1| predicted protein [Postia placenta Mad-698-R]
          Length = 380

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 61/333 (18%), Positives = 109/333 (32%), Gaps = 60/333 (18%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP +L+EF GQ        +        + A   ++F GPPG GKTTLA+++A+
Sbjct: 6   PLAERLRPSSLDEFVGQPHLTGPGSLL--MHLLGSGATGSMIFWGPPGCGKTTLARLLAK 63

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED----------RDVLFIDEIHRLSIIVEEILY 126
                F+  S    +   D+ A++   +           R +LF+DE+HR +   ++I  
Sbjct: 64  RTDAIFKELSA-TDSGISDVRAVVEEAKGVLALTGRQAVRTILFLDEVHRFNKAQQDIFL 122

Query: 127 PAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF-- 182
           P +E   L L+    E PS +     +SR  +             +  +        +  
Sbjct: 123 PFLEQGHLQLIGATTENPSFKLTGALISRCRVFVLERLTDDDITKIVTQAVERPCPAYPH 182

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
              + L +IV         A++       +      P      LR+              
Sbjct: 183 LTPKILSSIVSLSTGDARTALSLLELVLSSP-PDADPDALLASLRQSVS----------- 230

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
                      + D+ G    D+                   ISA     R +       
Sbjct: 231 ----------TSYDRTGDSHYDM-------------------ISALHKSVRGSQPSAALY 261

Query: 303 YMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           ++ +       P    R ++  A + +G+   H
Sbjct: 262 WLARMLTAGEDPLYVARRMVVCASEDIGLADNH 294


>gi|241764126|ref|ZP_04762162.1| AAA ATPase central domain protein [Acidovorax delafieldii 2AN]
 gi|241366532|gb|EER61025.1| AAA ATPase central domain protein [Acidovorax delafieldii 2AN]
          Length = 391

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 68/287 (23%), Positives = 103/287 (35%), Gaps = 43/287 (14%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFI 111
           ++  GPPG GKTTLA ++AR     FR+ S      P + +    AA       R VLF+
Sbjct: 1   MVLWGPPGCGKTTLALLLARYADAEFRAISAVLTGLPEVRQVLAEAAQRFAQGRRTVLFV 60

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTR-VGLLTN 168
           DE+HR +   ++   P +E   +  +    E PS       LSR  +          +  
Sbjct: 61  DEVHRFNKGQQDAFLPHIERGTILFVGATTENPSFELNSALLSRCRVHVLEAVSAQDIVQ 120

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            L+                     +RG    G+ V+DE+  EIA  + G  R A  LL  
Sbjct: 121 ALR---------------LALDDGERGLGSEGVQVSDESLGEIARAADGDVRRALTLLEI 165

Query: 229 VRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAG 288
             + A           I    L ++  D+               R   GG    + ISA 
Sbjct: 166 AAELA-----SDEDGHITPQTLAQVLADRT-------------RRFDKGGEQFYDQISAL 207

Query: 289 LSEPRDAIEDLIEPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
               R +  D    ++ +       P   GR L  +A   +G+  P 
Sbjct: 208 HKSVRSSNPDAALYWLARMLDGGCDPAYLGRRLTCMALDDIGLADPR 254


>gi|269119747|ref|YP_003307924.1| ATPase AAA [Sebaldella termitidis ATCC 33386]
 gi|268613625|gb|ACZ07993.1| AAA ATPase central domain protein [Sebaldella termitidis ATCC
           33386]
          Length = 408

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 68/336 (20%), Positives = 123/336 (36%), Gaps = 58/336 (17%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            L       +       RP+TLEEF GQ     +  V  +          + +F GP G 
Sbjct: 2   NLFENQNQDKKPLAYRYRPKTLEEFAGQKNIVGDKGVLKKILIK--SRFMNSIFWGPSGT 59

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLS 118
           GKTTLA++VA +L   +   +    A   D+  +    + R        +LF DEIHR +
Sbjct: 60  GKTTLAEIVAEQLNYYYEYLNA-TKASVNDIKEIAEKAKKRFSIEGKQTILFFDEIHRFN 118

Query: 119 IIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
            + ++ L   +E   + L+    E P        LSR                      +
Sbjct: 119 KLQQDSLLHDIEIGNIILIGATTENPYFNLNNALLSRC---------------------L 157

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
                  + ED+  I++R  +   + ++D+    I+    G  R A   L  + +  +V 
Sbjct: 158 MFEFKKLDKEDIFGILKRIREKEEIELSDDVLNYISDIVEGDARQAINFLELLSNLEDVN 217

Query: 237 HAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAI 296
            +    R+I           +  +D+++ +Y               +TISA +   R + 
Sbjct: 218 LSVDEVRQIIQT--------RKSYDRVEDKY---------------DTISAMIKSIRGSD 254

Query: 297 EDLIEPYMIQQGFIQRTP--RGRLLMPIAWQHLGID 330
            D    ++ +       P    R L+ +A + +G+ 
Sbjct: 255 PDAAVYWVAKMLSGGEDPLYLARRLVILASEDIGLA 290


>gi|301166020|emb|CBW25594.1| putative AAA family ATPase protein [Bacteriovorax marinus SJ]
          Length = 432

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 63/321 (19%), Positives = 107/321 (33%), Gaps = 57/321 (17%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP + E + GQ    +  K   E      +    ++  GPPG GKTTLA ++A       
Sbjct: 38  RPESFENYFGQEHIFTRYKFLKE------KNFPSLILWGPPGTGKTTLAHILAANSECEL 91

Query: 83  RSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
            + +  V+    +L  L+T             ++F+DEIHR +   ++ L P +E     
Sbjct: 92  YNFNA-VLGGVNELKKLITTALQTKADFGREAIIFVDEIHRFNKAQQDALLPYVEQGSFK 150

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
            +    E P +   K  LSR  +I                            E+L  I++
Sbjct: 151 FIGATTENPRSSVNKALLSRVQIIELKK---------------------LSEENLVHIIE 189

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
             +K   + +T EA   I   S G  R A  +L  +                        
Sbjct: 190 NVSKKFDIKITTEAIQFIGDYSNGDARNALNILEVIEKSLASKGE--------------- 234

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
              ++G + +    L              + ISA +   R +  +    ++         
Sbjct: 235 ---ELGLETIRPLVLENAREYDRNKDRHYDVISAFIKSMRGSDPNSAILWLAVMLDGGED 291

Query: 314 PR--GRLLMPIAWQHLGIDIP 332
           P    R L+  A + +G   P
Sbjct: 292 PVFIARRLVIFASEDIGNADP 312


>gi|330925922|ref|XP_003301253.1| hypothetical protein PTT_12704 [Pyrenophora teres f. teres 0-1]
 gi|311324199|gb|EFQ90653.1| hypothetical protein PTT_12704 [Pyrenophora teres f. teres 0-1]
          Length = 535

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 65/330 (19%), Positives = 108/330 (32%), Gaps = 62/330 (18%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP +L+   GQ       K  + A  A    L  ++  G PG GKTT+A+++A 
Sbjct: 119 PLAERMRPMSLDHVHGQE-LVGP-KGMLRAMVAEG-RLPSMVLWGRPGTGKTTIARLIAN 175

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAM 129
             G  F   +     +   + A+             + ++F DE+HR S   ++     +
Sbjct: 176 TSGSRFVEINS-TSTRLEQVRAIFAEASQDLRLTGRKTIVFCDELHRFSKTQQDAFLGPV 234

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E   + L+    E PS + +   LSR                                +D
Sbjct: 235 ESGTITLIAATTENPSFKIISALLSRCRTFTLDDLK---------------------EDD 273

Query: 188 LKTIVQRGAKLTGLAV---TDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           L  I++R                    A  S G  R A  LL      A  A    +T+E
Sbjct: 274 LVQILERAMAAENCTSPILDKSMLAYFARFSDGDARTALNLLELAMSLANQAD---MTKE 330

Query: 245 IADAALLRL-AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
               +L +    D+ G    D                   +ISA     R +  +    Y
Sbjct: 331 KIQQSLTKTLVYDRAGDQHYD-------------------SISALHKSIRGSDPNASLYY 371

Query: 304 MIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
           + +       PR   R L+ +A + +G+  
Sbjct: 372 LARMLESGEDPRYIARRLIVVASEDVGLAD 401


>gi|260889193|ref|ZP_05900456.1| ATPase, AAA family [Leptotrichia hofstadii F0254]
 gi|260861253|gb|EEX75753.1| ATPase, AAA family [Leptotrichia hofstadii F0254]
          Length = 407

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 60/339 (17%), Positives = 115/339 (33%), Gaps = 59/339 (17%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            L       +       RP++L++F GQ        +  +  +       + +F G PG 
Sbjct: 2   NLFDEVYEDKKPLAFRYRPKSLDDFYGQKRLVGENGILRKIIERGN--FMNAIFWGAPGT 59

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLS 118
           GKTTLA+++A ++  ++   +  + A   D+  +             + +LF+DEIHR +
Sbjct: 60  GKTTLAEIIADKMNYHYEYLNA-IKASVTDIKNISDKAHSSFHTNGQQTLLFLDEIHRFN 118

Query: 119 IIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
            + ++ L   +E+  + L+    E P        LSR                      +
Sbjct: 119 KLQQDSLLEDLENGNIILIGATTENPYYSLNNALLSRC---------------------M 157

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
                    +DL  I++   +   + ++D+    I+    G  R A  +L  + +     
Sbjct: 158 AFEFKKLSEDDLLKILKNINEKENIGISDDILGYISEIIEGDARQAINILELITNVGV-- 215

Query: 237 HAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAI 296
                T E     L          D+                     TISA +   R + 
Sbjct: 216 ---EFTLEEVKEILNTKKSYHRTEDKY-------------------NTISAMIKSIRGSD 253

Query: 297 EDLIEPYMIQQGFIQRT--PRGRLLMPIAWQHLGIDIPH 333
            D    +M +            R L+ +A + +G+  P 
Sbjct: 254 PDAAVYWMAKMLSGGEDILYIARRLVILASEDIGLANPQ 292


>gi|158313527|ref|YP_001506035.1| recombination factor protein RarA [Frankia sp. EAN1pec]
 gi|158108932|gb|ABW11129.1| AAA ATPase central domain protein [Frankia sp. EAN1pec]
          Length = 465

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 81/344 (23%), Positives = 128/344 (37%), Gaps = 47/344 (13%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           L+  ++      + LRPR L+E  GQ    +         +        V+  GPPG GK
Sbjct: 8   LAETLASSGPLAARLRPRGLDEVVGQRHLLAEGSPLRRLVEGGGTT--SVVLWGPPGTGK 65

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSII 120
           TTLA +V+R     FR  S  V A   D+ A++    +       R VLFIDE+HR +  
Sbjct: 66  TTLAHIVSRATRRRFRELSA-VTAGVKDVRAVVDEARETLSMSGVRTVLFIDEVHRFTRT 124

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI-- 176
            ++ L P++E   + L+    E P    V   LSR  L+            L +R     
Sbjct: 125 QQDALLPSVERGWVTLVAATTENPFFCVVSPLLSRSLLLTLEPLTDADIAELAERAVTDP 184

Query: 177 --PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
                      E  + +V+        A+T   A   A  +   P  AG       D A 
Sbjct: 185 RGYGGRLVLAEEAREHLVRVAGGDARRALTALEAGAEAALAAAGPDGAGP------DGAG 238

Query: 235 VAHAKTITREIA--DAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
              A  +  E+   + A+ R A   D+ G    D+  ++   ++  GG V          
Sbjct: 239 PDGAGPVRLELDLLERAVDRAAVRYDREGDQHYDV--VSAFIKSMRGGDV---------- 286

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
                  D    Y+ +       PR   R ++ +A + +G+  P
Sbjct: 287 -------DAALHYLARMLEAGEDPRFVARRMIILASEDVGMADP 323


>gi|317486968|ref|ZP_07945778.1| ATPase [Bilophila wadsworthia 3_1_6]
 gi|316921843|gb|EFV43119.1| ATPase [Bilophila wadsworthia 3_1_6]
          Length = 407

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 72/318 (22%), Positives = 110/318 (34%), Gaps = 55/318 (17%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
             LRP  L  F GQ      L   +E        L  +L  GPPG GK+TLA ++AR  G
Sbjct: 9   ERLRPSELALFVGQSHLAERLTTLLE-----GPRLPSLLLFGPPGCGKSTLALLLARARG 63

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137
            N    S P       L  L   L   D+L +DE+HR S   ++   P +E   L ++  
Sbjct: 64  GNVLRLSAPEAG----LQQLRRQLTGVDILVLDELHRFSKAQQDFFLPLLESGDLTMIAT 119

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
             E PS    +  LSR  ++    R+  L  P                 +L  + +RGA 
Sbjct: 120 TTENPSFSVTRQLLSRLHVL----RLRQLGRP-----------------ELLELGKRGAA 158

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257
              + + DE    ++  + G  R    L+       E        +       +    DK
Sbjct: 159 ALSVTLNDEILDFLSTAAHGDARTMLNLVEYASSLPEEKRNLPHVKATLPE--IMARHDK 216

Query: 258 MGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR-- 315
            G       Y + + ++  G                 +  D    Y+         PR  
Sbjct: 217 DGDSHY--EYASALIKSIRG-----------------SDPDAALYYLACLLEGGEDPRFI 257

Query: 316 GRLLMPIAWQHLGIDIPH 333
            R L+  A + +G+  P 
Sbjct: 258 CRRLILSASEDVGLADPQ 275


>gi|317056461|ref|YP_004104928.1| AAA ATPase central domain-containing protein [Ruminococcus albus 7]
 gi|315448730|gb|ADU22294.1| AAA ATPase central domain protein [Ruminococcus albus 7]
          Length = 426

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 62/333 (18%), Positives = 116/333 (34%), Gaps = 59/333 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+TL+E  GQ       K      +  +  + +++F GP G+GKTT+A+ +A 
Sbjct: 4   PLAERIRPKTLDEIVGQPHLMGVGKPLRRIIE--SGTIPNLIFYGPSGVGKTTIARFIAE 61

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE-----DRDVLFIDEIHRLSIIVEEILYPAMED 131
              +     +G   A   D+  ++   E     +  +L++DEI  L+   ++ L   +E+
Sbjct: 62  NANMTMFKLNG-TSASVADIKQIIAETEMIGGMNGILLYLDEIQYLNKKQQQSLLEYIEN 120

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
            ++ L+    E P        +SR T                              E + 
Sbjct: 121 GKITLISSTTENPYFYVYNAIISRST---------------------VFEFKPVTPEQIS 159

Query: 190 TIVQRGAKLTGLAV------TDEAACEIAMRSRGTPRIAGRLLRRVRDFAE--VAHAKTI 241
             ++R   L    +       +     IA    G  R +   +      AE        +
Sbjct: 160 PAIKRAFDLMAQDIGTEVILEEGVIEHIARGCGGDVRKSVNTVELCVLSAENGSKGELHV 219

Query: 242 TREIADAALLR--LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
             +       R  +  D+ G +  D   L+ + ++  G            S+   AI   
Sbjct: 220 KMDTVRELTQRSNMRYDREGDEHYD--ILSALQKSIRG------------SDENAAIHYA 265

Query: 300 IEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
               +I+ G I      R L+ IA + +G+  P
Sbjct: 266 AR--LIEAGDI--ISLCRRLLVIASEDVGLAYP 294


>gi|50954757|ref|YP_062045.1| recombination factor protein RarA [Leifsonia xyli subsp. xyli str.
           CTCB07]
 gi|50951239|gb|AAT88940.1| ATPase related to the helicase subunit [Leifsonia xyli subsp. xyli
           str. CTCB07]
          Length = 446

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 76/334 (22%), Positives = 117/334 (35%), Gaps = 57/334 (17%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAA--KARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
            +RP +L++  GQ          +  A  K        V+  GPPG GKTTLAQ +A   
Sbjct: 18  RMRPTSLDDVAGQRHLLRPGSPLVALASDKEGQSGSVSVILWGPPGTGKTTLAQAIAHSS 77

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAMED 131
           G  F   S  V A   D+  ++              VLF+DEIHR +   ++ L P +E+
Sbjct: 78  GRRFVELSA-VTAGVKDVRLVMDEALSTRDLYGVSTVLFLDEIHRFTKAQQDALLPGVEN 136

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             + L+    E PS   +   LSR  L+   T          D  G+ I     +   L 
Sbjct: 137 GWVILVAATTENPSFSVISPLLSRSLLLTLETLGD-------DDLGLVIDRAVADNRGLA 189

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF------AEVAHAKTITR 243
                       ++ D+    +   + G  R A   L            A       IT 
Sbjct: 190 G---------QFSLDDDGRAALVRLASGDARRALTALEAASVAAAALTPATSKKKPAITA 240

Query: 244 EIADAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           E+   A+ R     D+ G +  D+                   ISA +   R +  D   
Sbjct: 241 ELVAQAVDRALLRYDRNGDEHYDV-------------------ISAFIKSIRGSDVDAAL 281

Query: 302 PYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            Y+ +       PR   R ++  A + +G+  P 
Sbjct: 282 HYLARMLEAGEDPRFIARRIVISASEDIGMADPQ 315


>gi|228472019|ref|ZP_04056787.1| ATPase, AAA family [Capnocytophaga gingivalis ATCC 33624]
 gi|228276631|gb|EEK15344.1| ATPase, AAA family [Capnocytophaga gingivalis ATCC 33624]
          Length = 428

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 63/334 (18%), Positives = 109/334 (32%), Gaps = 61/334 (18%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP  L ++  Q       K  +     +      ++F GPPG GKTTLA ++A+
Sbjct: 6   PLAERMRPVHLTDYISQSHLVGE-KGALRMQIEKGVT-PSLIFWGPPGTGKTTLAHIIAK 63

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE--------DRDVLFIDEIHRLSIIVEEILYPA 128
           E    F S S  + +   D+  ++   +           ++FIDEIHR +   ++ L  A
Sbjct: 64  ESQRAFFSLSA-ISSGIKDVRDIIEKSKREQGLFTARNPIIFIDEIHRFNKTQQDSLLEA 122

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           +E   + L+    E PS   +   LSR  +                        N +  E
Sbjct: 123 VERGWVTLIGATTENPSFEVIPALLSRCQVYTL---------------------NPFSKE 161

Query: 187 DLKTIVQRGAKLT-GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           DL  ++ R  +    L        E     R +     +LL                   
Sbjct: 162 DLLALLTRAIEQDVELKRKKITLKETEALLRLSDGDGRKLLNTFELIVNTFPEGEEIVIT 221

Query: 246 ADAALLRLA-----IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
            D  L  +       DK G    D+                   ISA +   R +  +  
Sbjct: 222 NDKVLEIVQQNTVLYDKTGEQHYDI-------------------ISAFIKSIRGSDPNAA 262

Query: 301 EPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
             ++ +        +   R ++ +A + +G   P
Sbjct: 263 VYWLARMIEGGEDVKFIARRMLILASEDIGNANP 296


>gi|126737037|ref|ZP_01752772.1| ATPase [Roseobacter sp. SK209-2-6]
 gi|126721622|gb|EBA18325.1| ATPase [Roseobacter sp. SK209-2-6]
          Length = 437

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 69/343 (20%), Positives = 124/343 (36%), Gaps = 57/343 (16%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D   +     +Q     + LRPR+L+E  GQ    +   V     +  A  L  ++  
Sbjct: 1   MSDLFDVGREQENQ--PLAAALRPRSLDEVVGQKTLTAKGSVLRR--RIAANQLGSIVLY 56

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDV-LFIDEIHRLSI 119
           GPPG+GKT++A+ V   L   F+       A   D+  L      R + +F+DE+HR S 
Sbjct: 57  GPPGVGKTSIARAVGEMLNKEFKQLHA-TRAGVKDIRQLADEARIRPILIFVDEVHRFSA 115

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
              + L    E+   D +    + P     K  +SR T++                    
Sbjct: 116 TQADDLLSICEEGTADFIGATTQNPYTALPKALVSRSTILKLEPIA-------------- 161

Query: 178 IRLNFYEIEDLKTIVQRGAKLT-----GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
                  IED++ ++ RG +        + +  E    IA RS G  R A   L  +   
Sbjct: 162 -------IEDMEAVLARGLEHLAEMGIEVVLAPEQLRIIAGRSGGDARSALTTLESLAIG 214

Query: 233 AEVAHAKTITREIADAALLR--LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
              + +  +T ++ +       +  D+ G    D   ++   ++  GG            
Sbjct: 215 HGDSGSVKVTDDMLEEVYRAAPVNHDRSGDQHYD--IISAFIKSMRGGD----------- 261

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
                  + +  ++ +       PR   R +M  A + +G+  
Sbjct: 262 ------PEAVLYWLARLIHGGEDPRFIARRIMIQASEDVGLAD 298


>gi|116205431|ref|XP_001228526.1| hypothetical protein CHGG_10599 [Chaetomium globosum CBS 148.51]
 gi|88176727|gb|EAQ84195.1| hypothetical protein CHGG_10599 [Chaetomium globosum CBS 148.51]
          Length = 587

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 64/330 (19%), Positives = 111/330 (33%), Gaps = 51/330 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP TL+   GQ        V     +  ++ +  ++  G  G GKTT+A+ +AR
Sbjct: 160 PLAERMRPDTLDHVFGQD-LVGPNGVLRSLIE--SDRVPSMILWGGSGTGKTTIARCIAR 216

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAM 129
            +G  F   +        +   L             R ++F DEIHR +   +++    +
Sbjct: 217 RVGCRFIELNA-TSTGVAECKKLFAEAANELGLTGRRTIIFCDEIHRFNKGQQDVFLKPV 275

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E   + L+    E PS R     LSR       +        +  R              
Sbjct: 276 EAGTITLIGATTENPSFRVQAALLSRCRTFTLQSLTEDDIQHILLR-------------A 322

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE---VAHAKTITRE 244
           L+  V++        +  E    ++  + G  R A  LL            + ++ +T+E
Sbjct: 323 LQQEVEQEGLELSPLIDQELLRYLSSFADGDARTALNLLELALSLTNRPPSSDSEPVTKE 382

Query: 245 IADAALLRL-AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
              AAL +    D+ G    D                   TISA     R +  D    Y
Sbjct: 383 SIKAALTKTLVYDRAGDQHYD-------------------TISAFHKSVRGSDADAALYY 423

Query: 304 MIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
           + +       P    R ++ IA + +G+  
Sbjct: 424 LARMLQSGEDPLFIARRMVVIASEDVGLAD 453


>gi|224542103|ref|ZP_03682642.1| hypothetical protein CATMIT_01278 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525036|gb|EEF94141.1| hypothetical protein CATMIT_01278 [Catenibacterium mitsuokai DSM
           15897]
          Length = 423

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 65/322 (20%), Positives = 120/322 (37%), Gaps = 48/322 (14%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +RP  L++  GQ       ++  +  K   +    ++  GPPG GKTT+A+ +A +L
Sbjct: 7   ADSMRPIGLDDVIGQKHLVGENRLLKQFVKK--DHPMSIILYGPPGCGKTTIAKALAHDL 64

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
            + +R  +        ++  ++T  +  +   + +DE+HRL+   ++ L P +E   L +
Sbjct: 65  NIPYRIFNAST-GNKKEMDQIITEAKLSEGLFVIVDEVHRLNKAKQDHLLPYIESGLLII 123

Query: 137 M--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
                  P         SR  L            PL +   +              + +R
Sbjct: 124 AGCTTANPYHSINPAIRSRCHLCEV--------KPLNNEEIVKACKR-------AAVSER 168

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
           G       + ++    IA  S G  R A   L     +A   H   IT  I   A+ R  
Sbjct: 169 GLN-HQYEIDEDVYDYIARMSSGDVRYAYNCLELATIYAPDTH---ITLNIIQDAVPRAN 224

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY---MIQQGFIQ 311
           +    FD+ + +Y               +T+S      R +  +    Y   +I  G I+
Sbjct: 225 MQ---FDKDEDQY--------------YDTLSGLQKSIRGSDPNGALYYFAKLIDAGDIE 267

Query: 312 RTPRGRLLMPIAWQHLGIDIPH 333
                R L+  A++ +G+  P+
Sbjct: 268 --SLERRLITTAYEDIGLANPN 287


>gi|294011479|ref|YP_003544939.1| putative ATPase [Sphingobium japonicum UT26S]
 gi|292674809|dbj|BAI96327.1| putative ATPase [Sphingobium japonicum UT26S]
          Length = 436

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 74/339 (21%), Positives = 113/339 (33%), Gaps = 62/339 (18%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKAR---AEALDHVLFVGPPGLG 66
             V  +      LRPR L E  GQ           E A  R   A  L  ++  GPPG G
Sbjct: 11  PPVPADAPLADRLRPRALAEVVGQDHLTGP-----EGAIGRMVAAGRLSSIILWGPPGTG 65

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSII 120
           KTT+++++A  +G+ F   S  V +   DL  +    +D      + +LF+DEIHR +  
Sbjct: 66  KTTISRLLADAVGMRFEPISA-VFSGVADLKKVFAAAKDHARRGEKTLLFVDEIHRFNRA 124

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++   P +ED  + L+    E PS       LSR  ++            L DR     
Sbjct: 125 QQDGFLPFVEDGTVTLVGATTENPSFELNAALLSRAQVLILRRLDASALEQLLDR----- 179

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
                                 L +   A   +   + G  R    LL +V     +   
Sbjct: 180 --------------AEALTGRPLPLDAAAREALLASADGDGRF---LLNQVETLYSIDLP 222

Query: 239 KTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAI 296
           + +      A L R     DK      +L                   ISA     R + 
Sbjct: 223 QPLDPAGLSALLHRRVAVYDKDREGHYNL-------------------ISALHKSLRGSD 263

Query: 297 EDLIEPYMIQQGFIQRTPRG--RLLMPIAWQHLGIDIPH 333
                 Y+ +       P    R L+  A + +G+  P 
Sbjct: 264 PQAALYYLARMLTAGEEPLYVLRRLVRFAAEDIGLADPQ 302


>gi|293399822|ref|ZP_06643968.1| ATPase, AAA family [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291306222|gb|EFE47465.1| ATPase, AAA family [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 419

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 72/332 (21%), Positives = 126/332 (37%), Gaps = 63/332 (18%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIE--AAKARAEALDHVLFVGPPGLGKTTLAQ 72
           ++     +RP+ +EE  GQ        V  +  AAK     +  ++F GPPG GKTTLA 
Sbjct: 2   QEPLAFRMRPQKIEEIIGQKHLIGEGNVLRKCLAAK----RIFSMIFYGPPGTGKTTLAM 57

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAME 130
           V+A EL + +R  +  V     +L  +          +L +DE+HRL+   +++L P +E
Sbjct: 58  VLANELELPYRLFNA-VTGNKKELEQIFAEARLYPGLILIVDEVHRLNKDKQDLLLPHVE 116

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTL-----IAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +  + L+      P         SR  L     ++ T     L   LQ   G+   +   
Sbjct: 117 NGNITLIGATTSNPLHAINPAIRSRCHLFEVKALSQTDIEEALCKALQSPKGLNNEITI- 175

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
             ED   I+ R                    S G  R A  +L      ++   +K +  
Sbjct: 176 -EEDALHIISR-------------------HSNGDIRYALNILEICAIASDGCISKALVE 215

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGL---SEPRDAIEDLI 300
           + +   +  +++D  G    D+  L+   ++  G  V       G+   +   D+IE   
Sbjct: 216 QFSQ--IPNMSMDSDGDGYYDV--LSGFQKSIRGSDVDAALYYLGIMIEANDMDSIE--- 268

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
                           R L+  A++ +G+  P
Sbjct: 269 ----------------RRLLVTAYEDIGLGNP 284


>gi|171677199|ref|XP_001903551.1| hypothetical protein [Podospora anserina S mat+]
 gi|170936667|emb|CAP61326.1| unnamed protein product [Podospora anserina S mat+]
          Length = 570

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 66/329 (20%), Positives = 115/329 (34%), Gaps = 49/329 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP +L++  GQ        V     +   + +  ++  G  G GKTT+A+ +AR
Sbjct: 150 PLAERMRPDSLDDVFGQD-LVGPNGVLRSLIET--DRVPSMILWGGSGTGKTTIARCIAR 206

Query: 77  ELGVNFRSTSGPVIAKA------GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
            +G  F   +      A       + A  L     + ++F DEIHR S   +++    +E
Sbjct: 207 RVGSRFIELNATSTGVAEVKKFFAEAANELNLTGRKTIIFCDEIHRFSKSQQDVFLKPVE 266

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
              + L+    E PS +     LSR       +        +  R               
Sbjct: 267 AGTITLIGATTENPSFKVQAALLSRCRTFTLASLTREDLQRILVR------------AIQ 314

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA---EVAHAKTITREI 245
             IV+ G +L+ L + +E    ++  + G  R A  LL          +      +T++ 
Sbjct: 315 AEIVEEGIELSPL-IDEELLTYLSAFADGDARTALNLLELALSLTTRPQGGGEAPLTKDD 373

Query: 246 ADAALLRL-AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
             AAL +    D+ G    D                   TISA     R +  D    Y+
Sbjct: 374 IKAALTKTLVYDRAGDQHYD-------------------TISAFHKAVRGSDSDAALYYL 414

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
            +       P    R ++ IA + +G+  
Sbjct: 415 ARMLQSGEDPLFIARRMVVIASEDVGLAD 443


>gi|221115745|ref|XP_002160777.1| PREDICTED: similar to Werner helicase interacting protein 1 [Hydra
           magnipapillata]
          Length = 527

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 70/347 (20%), Positives = 115/347 (33%), Gaps = 77/347 (22%)

Query: 17  ADISLLRPRTLEEFTGQV--EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
                +RP   + F GQ    A + LK         +  +  ++  GPPG GKT+ A ++
Sbjct: 110 PLAEQMRPNNFDNFYGQNSFGAKNLLKELF-----VSNKIPSLILWGPPGCGKTSFAHII 164

Query: 75  ARELGVNFR-------STSGPVIAKAGDLAALLTNLE----DRDVLFIDEIHRLSIIVEE 123
           +R    +         S +   I    D   +  N +     + VLFIDEIHR + + ++
Sbjct: 165 SRRCKESDSKYRFVTLSATMAGINDVKDEIKVAKNEKKLTSRKTVLFIDEIHRFNKMQQD 224

Query: 124 ILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
              P +ED  + L+    E PS       +SR                        +  N
Sbjct: 225 TFLPYVEDGTIVLIGATTENPSFYINNALISRCH---------------------VVVFN 263

Query: 182 FYEIEDLKTIVQRGAKLTG--------LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
             E E +  I+Q   +L              + A   +A  + G  R A   L  +    
Sbjct: 264 SLETEVILKILQNAIELLNETDQEVAKCRFEEGALNLVAQYANGDARCALNKLDMILQAK 323

Query: 234 EV-----AHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETIS 286
           +           I+ E+    L R     DK G +  +L                   IS
Sbjct: 324 KESIHVSQANSQISCELIREELQRCCVNYDKAGDEHYNL-------------------IS 364

Query: 287 AGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
           A     R +  D    ++ +       P    R L+ IA + +G+  
Sbjct: 365 ALHKSIRGSDVDASIYWLARMLEGGEKPLYIARRLIRIASEDIGLAD 411


>gi|220904438|ref|YP_002479750.1| recombination factor protein RarA [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219868737|gb|ACL49072.1| AAA ATPase central domain protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 407

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 76/320 (23%), Positives = 121/320 (37%), Gaps = 59/320 (18%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
             +RP  L  F GQ    S L+  ++A +     L  +LF GPPG GK+TLA ++A+  G
Sbjct: 9   ERMRPDDLALFLGQTHLGSRLRSLMQAKR-----LPSLLFFGPPGCGKSTLALLLAKGTG 63

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137
             F   S P       L  L  +L   ++L +DE+HR S   ++   P +E   L L+  
Sbjct: 64  KTFLRLSAPEAG----LQHLRRSLSGIEILVLDELHRFSKAQQDFFLPLVESGDLTLLAT 119

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
             E PS    +  LSR  ++                             +L  + +RGA 
Sbjct: 120 TTENPSFSVTRQLLSRLHVLRL---------------------RPLGRTELVELARRGAM 158

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL--LRLAI 255
              + + DE A  +A  + G  R    L+  V        +     E   AAL  + +  
Sbjct: 159 DLQVEMPDELAELLAGVAHGDARTLLNLVEYVAALP----SDLREIEHIKAALPEVLVRH 214

Query: 256 DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR 315
           DK G +  +L   + + ++  G  V                 D    Y+         PR
Sbjct: 215 DKDGDNHYELA--SALIKSIRGSDV-----------------DAALYYLACLLEGGEDPR 255

Query: 316 --GRLLMPIAWQHLGIDIPH 333
              R L+  A + +G+  P+
Sbjct: 256 FICRRLILSASEDVGLADPN 275


>gi|134117618|ref|XP_772580.1| hypothetical protein CNBL0580 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50255195|gb|EAL17933.1| hypothetical protein CNBL0580 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 626

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 74/343 (21%), Positives = 127/343 (37%), Gaps = 36/343 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
                 RP  + ++ GQ +       L+V IEA+K         +  GPPG GKTTLA++
Sbjct: 140 PLAERSRPSEISQYIGQSDIVGLGSLLRVQIEASKLVG----SCILWGPPGCGKTTLARL 195

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILY 126
           +A+  G +F+  S    +   D+  +    +        R VL IDEIHR +   +++L 
Sbjct: 196 IAKSSGADFKELSA-TSSGTQDVRQVFEKAKNGLQMTGRRTVLMIDEIHRFNRAQQDLLL 254

Query: 127 PAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN--- 181
           P +E   + L+    E PS +     LSR  +             +       I  +   
Sbjct: 255 PYVEKGWIQLIGATTENPSFKVNGALLSRCQVFTLHAHSPESLQIILRNAVQTISESEPI 314

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPR--IAGRLLRRVRDFAEVAHAK 239
            Y    L   +   A   G A       E+A+R+  T     +    +RV   +     K
Sbjct: 315 PYLPSGLIPFLADVAD--GDARQALNGLELALRTCQTMDETASAEKAQRVNSASGEKMEK 372

Query: 240 TITREIADAALLRLAIDKMGFD--QLDLRYLTMIARNFGG-----GPVGIETISAGLSEP 292
              ++  DAA+      + G+   + D   +  + R         G    + ISA     
Sbjct: 373 EGQKDEFDAAVEEA---EEGYQKKKRDEEIMDAVRRGLQKGYNRTGEERYDMISALHKCL 429

Query: 293 RDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           R +       ++ +       P    R L+ +A + +G+   H
Sbjct: 430 RGSDGSAAMYWLARMITGGEDPLYIARRLIVVASEDVGLADNH 472


>gi|194333665|ref|YP_002015525.1| recombination factor protein RarA [Prosthecochloris aestuarii DSM
           271]
 gi|194311483|gb|ACF45878.1| AAA ATPase central domain protein [Prosthecochloris aestuarii DSM
           271]
          Length = 454

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 70/330 (21%), Positives = 114/330 (34%), Gaps = 54/330 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACS---NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
                +RP+TL++  GQ    +    L+ F+E  +     L  ++F GPPG GKTTLA++
Sbjct: 27  PLAERVRPQTLDQIAGQRHLVAEGAPLRRFLEEGR-----LPSLIFWGPPGSGKTTLAEI 81

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILY 126
            A  L   F   S  V A   D+   L            R +LFIDEIHR +   ++ L 
Sbjct: 82  CAHWLDFRFAKLSA-VDAGVKDVRQALEQADKARRIEGQRSLLFIDEIHRFNKAQQDSLL 140

Query: 127 PAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
            A+E   + L+    E PS       +SR  +                           +
Sbjct: 141 HAIEQGIVVLIGATTENPSFEVNAALMSRMQVYRLK---------------------PLD 179

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            ++LK +V R  K   L        +             R      D A        +  
Sbjct: 180 RDELKQVVMRALKTDQLLSDAGIVIDDWDVLLEFSAGDARKALNAVDAAAAMAPNVGSVH 239

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           I    L+++   K      D +           G    + ISA +   R +  D    ++
Sbjct: 240 INRELLMQVLQQK--LPSYDKK-----------GAYHYDIISAFIKSLRGSDPDAALFWL 286

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
            +       P+   R ++  + + +G   P
Sbjct: 287 AKMLEGGEDPKFIARRMVIFSSEDVGNADP 316


>gi|311894847|dbj|BAJ27255.1| putative ATPase [Kitasatospora setae KM-6054]
          Length = 449

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 79/353 (22%), Positives = 127/353 (35%), Gaps = 58/353 (16%)

Query: 2   MDREGLLSRNVSQEDADIS-------LLRPRTLEEFTGQVEACSNLKVFIE--AAKARAE 52
           MD   L +    +  +           +RPRTL+E  GQ +   +        A      
Sbjct: 1   MDEPDLFTHAAEERQSTEPGRAPLAVRMRPRTLDEVAGQRQLLKDGSPLRRLVAGSKGPA 60

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------ED 105
           A   V+  GPPG GKTTLA V+++ +   F   S  +     ++ A++            
Sbjct: 61  ATSSVILWGPPGTGKTTLAHVISQAVEGRFVELSA-ITHGVKEVRAVIDGARRAVGMSGR 119

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRV 163
             VLF+DEIHR S   ++ L PA+E+  + L+    E P    +   LSR  L+   +  
Sbjct: 120 ETVLFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYFSVISPLLSRSLLLTLESLT 179

Query: 164 GLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAG 223
                 L  R                T  +RG     + ++ EA   +   + G  R A 
Sbjct: 180 DEDVRILLRR---------------ATADERGLGG-SVELSPEAEDHLVRLAGGDARRAL 223

Query: 224 RLLRRVRDFAEVAHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVG 281
             L      A     K +T    + A+ + A   D+ G    D+   + + ++  G  V 
Sbjct: 224 TTLEAAAGAALEQGEKVLTLAATETAVNQAAVRYDRDGDQHYDVA--SALIKSIRGSDV- 280

Query: 282 IETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
                           D    Y+ +       PR   R LM  A + +G+  P
Sbjct: 281 ----------------DATLHYLARMIEAGEDPRFIARRLMISASEDVGLADP 317


>gi|222151512|ref|YP_002560668.1| hypothetical protein MCCL_1265 [Macrococcus caseolyticus JCSC5402]
 gi|222120637|dbj|BAH17972.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 419

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 62/326 (19%), Positives = 109/326 (33%), Gaps = 48/326 (14%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +     +RP T+++  GQ        +     +A+   L  ++  GPPG+GKT++AQ +A
Sbjct: 2   EPLAYRMRPNTIDDIIGQAHLVGPRGIIRRMVEAK--RLSSMILYGPPGIGKTSIAQAIA 59

Query: 76  RELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
               + FR  +     K    L A    +  + +L +DEIHRL    ++ L P +E   +
Sbjct: 60  GSTNLKFRQLNAVTNTKKDMQLIAEEAKMSGQVILLLDEIHRLDKGKQDFLLPHLEKGSI 119

Query: 135 DLM--VGEGPSARSVKINLSR-----FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
            L+      P         SR                 LT  L D               
Sbjct: 120 ILIGATTSNPYHAINPAIRSRTQIFELYPHGDKEVKQALTRALNDDV------------- 166

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
                  G     + + D+A       + G  R A   L      A+        ++  D
Sbjct: 167 ------NGYGKKDVKIDDDAVSHFVQSAAGDIRTALNALELAVLSAQGDPVHITLQDAKD 220

Query: 248 AALL-RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
                    D  G    D   ++   ++  G  V              ++  L    +I+
Sbjct: 221 CLQKPSFNFDADGDMHYD--IMSAFQKSIRGSDVDA------------SLHYLAR--LIE 264

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIP 332
            G +      R L+ I+++ +G+  P
Sbjct: 265 GGDLPTI--ARRLLVISYEDVGLASP 288


>gi|126322073|ref|XP_001368463.1| PREDICTED: similar to Werner helicase interacting protein 1 isoform
           2 [Monodelphis domestica]
          Length = 677

 Score =  124 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 67/355 (18%), Positives = 122/355 (34%), Gaps = 58/355 (16%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFV 60
           RE +  + V +  AD   +RP TL+E+ GQ +       L+  +E+ +     +  ++  
Sbjct: 242 REEIWQKLVGKPLAD--KMRPATLQEYIGQNKVVGQETLLRSLLESNE-----IPSLILW 294

Query: 61  GPPGLGKTTLAQVVARELGVNFRST--SGPVIAKAGDLAALLTNLE-------DRDVLFI 111
           GPPG GKTTLA ++A     N           AK  D+  ++   +        + +LFI
Sbjct: 295 GPPGCGKTTLAYIIANNSKKNSMRFVTLSATSAKTSDVRDVIKQAQNEKNFFKRKTILFI 354

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DEIHR +   +                   PS +     LSR  +I            + 
Sbjct: 355 DEIHRFNKSQQ------------------NPSFQVNAALLSRCRVIVLEKLSAEAMKTIL 396

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTG--------LAVTDEAACEIAMRSRGTPRIAG 223
            R    + L   +       V  G   +         + + D+A   +A    G  R   
Sbjct: 397 MRAVSSLGLRVLDQGRPTDSVSHGNSSSCSSSSSEPLVYIEDKAVNTLAYLCDGDARTGL 456

Query: 224 RLLRRVRDFAEVAHAKTITREIADAA----LLRLAIDKMGFDQLDLRYLTMIARNFGGGP 279
             L+        +      + + + +    L+     K G  +  + Y      ++    
Sbjct: 457 NGLQLAVQAKLGSRKPFCKKTVQNYSGESVLITENDIKEGLQRSHILYDRAGEEHYNC-- 514

Query: 280 VGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
                ISA     R + ++    ++ +       P    R L+  A + +G+  P
Sbjct: 515 -----ISALHKSMRGSDQNASLYWLARMLEGGEDPLYVARRLVRFASEDIGLADP 564


>gi|254994482|ref|ZP_05276672.1| recombination factor protein RarA [Listeria monocytogenes FSL
           J2-064]
          Length = 227

 Score =  124 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 91/227 (40%), Gaps = 15/227 (6%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+ L+E  GQ       K+     KA+   L  ++  GPPG+GKT++A  +A 
Sbjct: 5   PLAYRMRPKALDEIVGQTHLVGKDKIIYRMVKAKQ--LSSMILYGPPGIGKTSIASAIAG 62

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR+ +     K   ++ A    +    +L +DE+HRL    ++ L P +E   + 
Sbjct: 63  STKYAFRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQDFLLPLLESGAI- 121

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           +++G   S   + IN +    I + T++  L     +   I        ++   +  +RG
Sbjct: 122 ILIGATTSNPYIAINPA----IRSRTQIFELKPLTVEDIMI-------TMDRALSDKERG 170

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
                + + + A    A  S G  R A   L      +E      I 
Sbjct: 171 LGNYDVEIDEVAKKHFATASNGDVRSALNALELAVISSEPNEDGVIH 217


>gi|162312526|ref|NP_594449.2| DNA replication ATPase [Schizosaccharomyces pombe 972h-]
 gi|74626620|sp|O13984|WRIP1_SCHPO RecName: Full=ATPase WRNIP1 homolog C26H5.02c
 gi|62867681|emb|CAB16188.2| DNA replication ATPase [Schizosaccharomyces pombe]
          Length = 504

 Score =  124 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 58/326 (17%), Positives = 110/326 (33%), Gaps = 48/326 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                 RP++L+E+ GQ E      +     +   +  + ++  G  G GKTTLA+++A 
Sbjct: 85  PLAERARPKSLDEYVGQEELVGERGIIRNLIEQ--DRCNSMILWGSAGTGKTTLARLIAV 142

Query: 77  ELGVNFRSTSGPVIAKAGDLAAL-------LTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
                F   S        D   +       LT    + ++F+DE+HR +   ++I  P +
Sbjct: 143 TTKSRFIEISATSTT-VADCRKIFEDSQNYLTLTGRKTIIFLDEVHRFNRAQQDIFLPMV 201

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E   + L+    E PS R     +SR  +                             ++
Sbjct: 202 EKGLVTLIGATTENPSFRLNSALISRCPVFVLKK---------------------LTRDN 240

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           +K I+                 E        P +   ++  +   A       +     +
Sbjct: 241 VKKILNHA-----------CLLESERLGSSMPNVETSIIDYIS--AITDGDARMALNALE 287

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
            ++  L    +  + +  + +   A     G V  +TISA     R +  D    Y+ + 
Sbjct: 288 MSIGMLRQGPLSLEDIKDKLVRSSALYDRVGDVHYDTISAFHKSVRGSDVDATLYYLGRM 347

Query: 308 GFIQRTPR--GRLLMPIAWQHLGIDI 331
                 P    R ++ IA + +GI  
Sbjct: 348 LESGEDPLYVARRMVRIASEDIGIAD 373


>gi|183220685|ref|YP_001838681.1| recombination factor protein RarA [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189910786|ref|YP_001962341.1| recombination factor protein RarA [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167775462|gb|ABZ93763.1| helicase-like ATPase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167779107|gb|ABZ97405.1| Putative ATPase involved in DNA replication [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 419

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 78/330 (23%), Positives = 125/330 (37%), Gaps = 55/330 (16%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           + L S   S++     L+RP+T  EF GQ +  + L+   +           +LF GPPG
Sbjct: 2   DSLFSN--SKQVPLAHLVRPKTWSEFVGQTKVVAALRSITK--------PTSILFYGPPG 51

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-RDVL-FIDEIHRLSIIVE 122
            GKTTLA ++A    +  R  S  V +   ++  +L   +    ++ F+DEIHR S   +
Sbjct: 52  TGKTTLAHLLAESWKLEKRYLS-CVTSGVKEVREVLEEGKRLGTIVLFLDEIHRFSSSQQ 110

Query: 123 EILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           + L  A+E+ ++ L+    E PS R  K  LSR  +   TT        L +     I L
Sbjct: 111 DALLSAVEEGEIILIAATTENPSFRVNKALLSRMLVYRLTT--------LTEEEEDQIFL 162

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           +  E ++               +++    E+  RS G  R     L R+    +   A T
Sbjct: 163 SCLEKQNT-----------NRTISETVKQELFRRSAGDARKLLGYLERILFATKEGEAIT 211

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
             R         +  DK      D+                   ISA +   R +  D  
Sbjct: 212 DERLSEILGDTLVTYDKNSESHYDI-------------------ISAFIKSLRGSDPDAA 252

Query: 301 EPYMIQQGFIQRTPR--GRLLMPIAWQHLG 328
             Y+         P    R L+  A + +G
Sbjct: 253 LFYLALMLEGGEDPLFIARRLVIFASEDVG 282


>gi|269795071|ref|YP_003314526.1| Recombination protein MgsA [Sanguibacter keddieii DSM 10542]
 gi|269097256|gb|ACZ21692.1| Recombination protein MgsA [Sanguibacter keddieii DSM 10542]
          Length = 490

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 81/348 (23%), Positives = 124/348 (35%), Gaps = 53/348 (15%)

Query: 21  LLRPRTLEEFTGQVEAC---SNLKVFIEAAK--ARAEALDHVLFVGPPGLGKTTLAQVVA 75
            +RP +L E  GQ       S L+  +E A   +R  A   V+  GPPG GKTTLA ++A
Sbjct: 26  RMRPASLAEVAGQKHLLVQGSPLRRLVEPADDSSRRAAPGSVILWGPPGTGKTTLAYLIA 85

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPA 128
              G  F   S  V A   D+ A++ +   R        VLFIDE+HR S   ++ L P+
Sbjct: 86  TSSGRRFVELSA-VTAGVKDVRAVIEDARRRLATGGSETVLFIDEVHRFSKSQQDALLPS 144

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           +E+  + L+    E PS       LSR  L+            L  R             
Sbjct: 145 VENRWVTLVAATTENPSFSVNSPLLSRSLLLTLQPLTTDDVRTLVRRAVED--------- 195

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
                 +RG     + + D+A   +   + G  R A  +L      A   H +       
Sbjct: 196 ------ERGLAA-TVRLDDDAEDHLLRLAGGDARKALTILEAAAGAALSDHREEELVGKP 248

Query: 247 DAA--------------------LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETIS 286
           D A                        A+  +    ++        R    G    + IS
Sbjct: 249 DGASGETDAAETDADEDAADEDADDGAALVTVDLATMERAIDVAAVRYDRDGDQHYDVIS 308

Query: 287 AGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           A +   R +  D    Y+ +       PR   R ++  A + +G+  P
Sbjct: 309 AFIKSMRGSDVDASLHYLARMIAAGEDPRFIARRVVIAAAEEVGMADP 356


>gi|116629635|ref|YP_814807.1| recombination factor protein RarA [Lactobacillus gasseri ATCC
           33323]
 gi|116095217|gb|ABJ60369.1| Helicase subunit of the Holliday junction resolvase related ATPase
           [Lactobacillus gasseri ATCC 33323]
          Length = 429

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 69/324 (21%), Positives = 119/324 (36%), Gaps = 50/324 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
               L+RP+ L +F GQ +     +   +  K        +L  GPPG GKT+LAQ++AR
Sbjct: 9   PLADLIRPKDLSQFVGQKDLIEEGRPLYQIIKKHVPI--SLLLWGPPGTGKTSLAQIIAR 66

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           E      + +  +  KA     + T      VL IDEIHR++  +++ L P +E+ ++ L
Sbjct: 67  EFDYPLATFNASIDNKAKLTQIINTYPYQSFVLLIDEIHRMTTTLQDFLLPYLENGRILL 126

Query: 137 M--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           +    E P    V    SR                                ED++ ++ R
Sbjct: 127 IGATTENPIMSIVPAVRSRCQ---------------------IFEFKALSDEDIEQVLIR 165

Query: 195 GAKL----TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
             K         +  +A   IA+ + G  R+A  LL  +     V    ++         
Sbjct: 166 ALKEVFHFKDENIDRKAVKIIAISADGDLRVALNLLETIH---AVNEDLSVEEVKQFVKG 222

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
              A D+      D  YL   + +  G     +T +A                +++ G +
Sbjct: 223 QHFAYDRKATKHYD--YLAAYSDSIAGS----DTDAAL----------YYLAVLLKNGDL 266

Query: 311 QRTPRGRLLMPIAWQHLGIDIPHR 334
                 R L  I + ++G+  P +
Sbjct: 267 ASVV--RRLREIPYTYIGLANPEQ 288


>gi|315038424|ref|YP_004031992.1| recombination factor protein RarA [Lactobacillus amylovorus GRL
           1112]
 gi|312276557|gb|ADQ59197.1| recombination factor protein RarA [Lactobacillus amylovorus GRL
           1112]
          Length = 420

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 68/315 (21%), Positives = 119/315 (37%), Gaps = 41/315 (13%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP  L+E  GQ E     K   +  + +      +L  GPPG GK++LA+++AR     
Sbjct: 11  MRPNNLKEIVGQQELLGKGKPLRQIIEQKVPI--SLLLWGPPGTGKSSLARIIARTNEYA 68

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VG 139
           F S +  +  KA  L  + T      VL IDEIHR++  +++ L P +E+  + L+    
Sbjct: 69  FASFNASIDNKAKLLNIIDTYPHQTFVLLIDEIHRMTKTLQDFLLPYLENGHVILIGATT 128

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199
           E P    V    SR  +             + +R                  +Q+   L 
Sbjct: 129 ENPIMSIVPAVRSRCQIFEFKALTDKDIQTVLNR-----------------AIQKIYHLK 171

Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259
                +EA   IA  + G  R+A  +L  ++       + +  ++         A DK  
Sbjct: 172 DDQFDEEAIKLIATSADGDLRVALNILEVIQATNPDKLSTSAVKQFVKE--QHFAYDKKA 229

Query: 260 FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLL 319
               D  YL   + +  G     +T +A                +++ G +      R L
Sbjct: 230 TKHYD--YLAAYSDSMAGS----DTDAAL----------YYLAVLLKNGDLPSVV--RRL 271

Query: 320 MPIAWQHLGIDIPHR 334
             I + ++G+  P +
Sbjct: 272 REIPYTYIGLANPEQ 286


>gi|238854285|ref|ZP_04644629.1| recombination factor protein RarA [Lactobacillus gasseri 202-4]
 gi|282851165|ref|ZP_06260532.1| ATPase, AAA family [Lactobacillus gasseri 224-1]
 gi|238833096|gb|EEQ25389.1| recombination factor protein RarA [Lactobacillus gasseri 202-4]
 gi|282557697|gb|EFB63292.1| ATPase, AAA family [Lactobacillus gasseri 224-1]
          Length = 426

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 69/324 (21%), Positives = 119/324 (36%), Gaps = 50/324 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
               L+RP+ L +F GQ +     +   +  K        +L  GPPG GKT+LAQ++AR
Sbjct: 6   PLADLIRPKDLSQFVGQKDLIEEGRPLYQIIKKHVPI--SLLLWGPPGTGKTSLAQIIAR 63

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           E      + +  +  KA     + T      VL IDEIHR++  +++ L P +E+ ++ L
Sbjct: 64  EFDYPLATFNASIDNKAKLTQIINTYPYQSFVLLIDEIHRMTTTLQDFLLPYLENGRILL 123

Query: 137 M--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           +    E P    V    SR                                ED++ ++ R
Sbjct: 124 IGATTENPIMSIVPAVRSRCQ---------------------IFEFKALSDEDIEQVLIR 162

Query: 195 GAKL----TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
             K         +  +A   IA+ + G  R+A  LL  +     V    ++         
Sbjct: 163 ALKEVFHFKDENIDRKAVKIIAISADGDLRVALNLLETIH---AVNEDLSVEEVKQFVKG 219

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
              A D+      D  YL   + +  G     +T +A                +++ G +
Sbjct: 220 QHFAYDRKATKHYD--YLAAYSDSIAGS----DTDAAL----------YYLAVLLKNGDL 263

Query: 311 QRTPRGRLLMPIAWQHLGIDIPHR 334
                 R L  I + ++G+  P +
Sbjct: 264 ASVV--RRLREIPYTYIGLANPEQ 285


>gi|328463405|gb|EGF35073.1| AAA family ATPase [Lactobacillus rhamnosus MTCC 5462]
          Length = 305

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 56/267 (20%), Positives = 93/267 (34%), Gaps = 25/267 (9%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            +RP+ L+E  GQ E     ++      A    L  ++  GPPG GKT++A  +A     
Sbjct: 34  RMRPQNLDEVVGQQELVGPGRIIRRMVSAH--RLSSMILYGPPGTGKTSIASAIAGSTKY 91

Query: 81  NFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137
            FR  +     K    + A    +    +L +DEIHRL    ++ L P +E  ++ L+  
Sbjct: 92  AFRILNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPLLESGRIVLIGA 151

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
             E P         SR  +           +   DR                   +RG  
Sbjct: 152 TTENPYMNIQPAIRSRTQIFQVKPLTPTDISTAIDR--------------ALADDKRGLG 197

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE--IADAALLR--L 253
              + +T EA   +   + G  R A   L             TI  +      +L +  +
Sbjct: 198 KYQVDLTPEARDYLTHTTNGDLRAALNGLELAVLSTPAKSDGTIIIDLTTIQQSLQKPAI 257

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPV 280
           + D  G    D   ++   ++  G  V
Sbjct: 258 SGDTNGDAHYD--IISAFQKSIRGSDV 282


>gi|296808211|ref|XP_002844444.1| DNA-dependent ATPase MGS1 [Arthroderma otae CBS 113480]
 gi|238843927|gb|EEQ33589.1| DNA-dependent ATPase MGS1 [Arthroderma otae CBS 113480]
          Length = 541

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 70/337 (20%), Positives = 116/337 (34%), Gaps = 65/337 (19%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSN--LKVFIEAAKARAEALDHVLFVGPPGLG 66
           S  + +       +RP+TL+E  GQ     N  L+  IE  +              P  G
Sbjct: 131 SNALQKSAPLAERMRPQTLDEVCGQELVGKNGVLRGLIERDRV-------------PSTG 177

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSI 119
           KTT+A+V+A  +G  F   +    +   +   L             + ++F DEIHR S 
Sbjct: 178 KTTVARVIANMVGSRFVEINS-TSSGVAECKKLFAEARNELSLTGRKTIIFCDEIHRFSK 236

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             +++    +E  Q+ L+    E PS +     LSR                + +R  + 
Sbjct: 237 AQQDVFLGPVESGQVTLIGATTENPSFKVQNALLSRCRTFTLAKLTENDICAILNR-ALR 295

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
           +    Y    L              V +E    +A  + G  R A  LL    D ++   
Sbjct: 296 VEGPNYSPSAL--------------VDEELVKYLAAFADGDARTALNLLELAMDLSQ--- 338

Query: 238 AKTITREIADAALLRL-AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAI 296
            + +T+E    +L R    D+ G    D                   TISA     R + 
Sbjct: 339 RENMTKEELKKSLTRTLVYDRAGDQHYD-------------------TISAFHKSIRGSD 379

Query: 297 EDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
            D    Y+ +       P    R L+ +A + +G+  
Sbjct: 380 PDASLYYLARMIQSGEDPLYIARRLIVVASEDVGLAD 416


>gi|332686848|ref|YP_004456622.1| ATPase [Melissococcus plutonius ATCC 35311]
 gi|332370857|dbj|BAK21813.1| uncharacterized ATPase (AAA family) associated with cysteine
           desulfurase [Melissococcus plutonius ATCC 35311]
          Length = 426

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 66/328 (20%), Positives = 119/328 (36%), Gaps = 51/328 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+ L +  GQ +     K+     K +   L  ++  GPPG GKT++A  +A 
Sbjct: 4   PLAYRMRPKQLSDVVGQKQLVDKDKIIYRMVKTK--MLTSMILYGPPGTGKTSIASAIAG 61

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
                FR  +     K  DL  ++   +     +L +DE+HRL    ++ L P +E  ++
Sbjct: 62  STNYAFRMLNAATDTK-KDLQIVVDEAKMSGTVILLLDEVHRLDKTKQDFLLPHLESGKI 120

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV-- 192
            +++G       + IN                   ++ R  I       E +  + I+  
Sbjct: 121 -ILIGATTENPYISIN-----------------PAIRSRLQIFELKPLTEQDIKQAIINA 162

Query: 193 ----QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK--TITREIA 246
               ++G     + + DEA   ++  + G  R A   L       E    +   IT  I 
Sbjct: 163 LKNTEQGLGEYPVVLEDEAFVHLSRSTNGDLRSALNGLELAVKSTEKNEEQKIVITLPII 222

Query: 247 DAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +  + + A   DK G    D      +   F     G +  +A                +
Sbjct: 223 EECIQKKALSHDKDGDAHYD------VISAFQKSIRGSDVDAALH----------YLGRL 266

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           I+ G +      R LM  A++ +G+  P
Sbjct: 267 IEAGDLPIIC--RRLMVTAYEDIGLGNP 292


>gi|291541725|emb|CBL14835.1| Recombination protein MgsA [Ruminococcus bromii L2-63]
          Length = 421

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 63/334 (18%), Positives = 123/334 (36%), Gaps = 60/334 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+T+++  GQ    +  +   +  ++    + +++F GP G+GKTTLA  +A+
Sbjct: 4   PLADRIRPKTIDDIVGQKHLIAPDRPLRKIIESGD--IPNLIFYGPSGVGKTTLATYIAK 61

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE-----DRDVLFIDEIHRLSIIVEEILYPAMED 131
           +     +  +G   + A D+  ++  L      +  +L++DEI   +   ++ L   +E+
Sbjct: 62  KTNRTLKKLNGTTASTA-DIKEIVAQLNTFSGLNGILLYLDEIQYFNKKQQQTLLEYIEN 120

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             + L+    E P        LSR T                            + ++++
Sbjct: 121 GSITLIASTTENPYFYVYNAILSRST---------------------VFEFKPVDQDEVE 159

Query: 190 TIVQRGAKLT------GLAVTDEAACEIAMRSRGTPRIAGRLLRR-VRDFAEVAHAKTIT 242
             V R +          + + +E A +IA    G  R A   +   V    E+   K + 
Sbjct: 160 KAVYRASDFLAEESGTDIEMPEECAKKIASGCGGDVRKAMNAVELSVIATDEIDGKKVVR 219

Query: 243 REIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
            E  +  + + A   D+ G +  D+                   ISA     R +  D  
Sbjct: 220 LETVEQLVQKSAVRYDREGDEHYDI-------------------ISAYQKSMRGSDPDAA 260

Query: 301 EPYMIQQGFIQRTPRG-RLLMPIAWQHLGIDIPH 333
             Y+ +       P   R LM  A + +G+  P 
Sbjct: 261 LHYLARLLEAGDLPSACRRLMVCASEDVGLAYPQ 294


>gi|157736320|ref|YP_001489003.1| recombination factor protein RarA [Arcobacter butzleri RM4018]
 gi|157698174|gb|ABV66334.1| ATPase, AAA family protein [Arcobacter butzleri RM4018]
          Length = 394

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 76/324 (23%), Positives = 127/324 (39%), Gaps = 59/324 (18%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           + LRP  LE F GQ    S  K   +  K +   + H+ F G PG GKTTLA+++A+E+G
Sbjct: 6   NKLRPTNLETFVGQSHIISKDKALYKLIKQKD--IPHLFFYGKPGTGKTTLAKIIAKEIG 63

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
            ++   +   I K  DL  +    +    + ++FIDE+HRLS   +E+L P ME++   +
Sbjct: 64  TDYYYFNATSI-KVEDLRKVFDKYKGALIKPLIFIDEVHRLSKNQQEVLLPIMENYD-AI 121

Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA 196
           ++G              FT          LTN ++ R         +  +++  I+    
Sbjct: 122 IIGASTEN-------PFFT----------LTNAIRSRS-FLYEFKPFTKDEMNKILYIAL 163

Query: 197 KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAID 256
           K   + ++D A   + + S G  R    LL      ++  +   +         LR  + 
Sbjct: 164 KDIDINISDGAKEYLIISSSGDARAMLTLLNFSYKVSKDINIDLLKE-------LRENVI 216

Query: 257 KMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ-------GF 309
             G    D  Y               +  SA +   R +  D    YM +         F
Sbjct: 217 GDGVSSSDTHY---------------DLASAMIKSLRGSNVDGALYYMARLINGGESVDF 261

Query: 310 IQRTPRGRLLMPIAWQHLGIDIPH 333
           I      R L+  A + +G   P+
Sbjct: 262 IT-----RRLVIFASEDIGNANPN 280


>gi|323342313|ref|ZP_08082545.1| AAA family ATPase [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322463425|gb|EFY08619.1| AAA family ATPase [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 419

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 60/320 (18%), Positives = 112/320 (35%), Gaps = 53/320 (16%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            +RP T+++  GQ       ++     ++    L  ++F GPPG GKTT A  +A  L  
Sbjct: 8   RVRPETIDDIIGQEHLLGENQILRNVVESGN--LHSMIFFGPPGTGKTTTAMAIANSLKR 65

Query: 81  NFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137
            +R  +     K   D   L   +    V+ IDE+HRL+   ++IL P +E   + ++  
Sbjct: 66  PYRLFNAVTDNKKKLDALFLEAEMSSGLVVIIDEVHRLNKDKQDILLPHVESGLITMIGA 125

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
               P         SR                                 ++ +I++R + 
Sbjct: 126 TTANPYFSINPAIRSRVH---------------------LFEFKPLSYNNIVSILKRASA 164

Query: 198 LTGLAV--TDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255
           +        ++    IA    G  R A   L  +              E    ++  +++
Sbjct: 165 VFENNQVIQEDVLESIASSCNGDARYALNALDLLVQSTRDDIITEKHLEKLSLSVN-ISM 223

Query: 256 DKMGFDQLDLRYLTMIARNFGGGPV--GIETISAGLSE-PRDAIEDLIEPYMIQQGFIQR 312
           DK   +  D   L+   ++  G  V   +  ++  +     D+IE               
Sbjct: 224 DKDSDNHYDA--LSAFQKSIRGSDVQAALYYLAKLIHVGDMDSIE--------------- 266

Query: 313 TPRGRLLMPIAWQHLGIDIP 332
               R L+ IA++ +G+  P
Sbjct: 267 ----RRLIAIAYEDIGLANP 282


>gi|255731133|ref|XP_002550491.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
 gi|240132448|gb|EER32006.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
          Length = 698

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 69/332 (20%), Positives = 132/332 (39%), Gaps = 38/332 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP+TL++F GQ +            +  ++ +   L  G PG+GKT+LA+++A+
Sbjct: 161 PLAHRLRPKTLDDFFGQEKLLGKDGALRNMIQ--SDIIPSFLLWGVPGIGKTSLARIIAK 218

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAM 129
                F   SG + + A +L  +    E        R +LF+DEIHR +  V+++L P +
Sbjct: 219 NSRCKFVELSG-IDSNAKNLKEVFLQAENHKKLTGQRTILFLDEIHRFNKAVQDLLLPVI 277

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E   + ++    E PS       LSR            +  PL     I I      + +
Sbjct: 278 EKGIVTVIGATTENPSFNLNNALLSRVHT--------FVMEPLNTESLIKILTR--ALFE 327

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI-A 246
           +  I ++      +++  +A   IA  S G  R+A  +L  +  +      K    +   
Sbjct: 328 VNRIRKKLYGFHYISLQKDAYHYIANLSMGDSRVALNILETLNAYLSADKFKIDNNDTSP 387

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
              +++++ D +        +  M       G    + ISA     R +  +    Y+++
Sbjct: 388 KQGVIKVSADLLKPLLKTRNFHQM---YDRNGDSHYDIISAFHKSIRGSDPNAAMFYLVK 444

Query: 307 Q-------GFIQRTPRGRLLMPIAWQHLGIDI 331
                    FI R    R+++  + + +G+  
Sbjct: 445 MLSGGEDPMFIMR----RMIVISS-EDIGLRD 471


>gi|187778844|ref|ZP_02995317.1| hypothetical protein CLOSPO_02439 [Clostridium sporogenes ATCC
           15579]
 gi|187772469|gb|EDU36271.1| hypothetical protein CLOSPO_02439 [Clostridium sporogenes ATCC
           15579]
          Length = 415

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 70/324 (21%), Positives = 123/324 (37%), Gaps = 44/324 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
               L+RP  LE+F GQ    S  K      K   +++ + +F GPPG GKTTLA ++A 
Sbjct: 3   PLADLMRPNKLEDFVGQKHILSENKPLYNLMK--NKSICNSIFYGPPGTGKTTLANIMAN 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE-----DRDVLFIDEIHRLSIIVEEILYPAMED 131
            +   F   +    A   D+  + +++         VL+IDE+   +   ++ L   +ED
Sbjct: 61  YVDKKFYRLNA-TTASIKDIQEITSSINSLLNYSGVVLYIDELQHFTKKQQQALLEFIED 119

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
            ++ L+    E P     K  LSR  +            PL     I         + + 
Sbjct: 120 GRVVLIASTTENPYFVIHKAILSRCNIFQF--------KPLNKEEIILGLK-----KAIN 166

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            ++ +G     +  TDEA   I    +G  R A  +L    +     + +     I    
Sbjct: 167 KLIDKG---INIKYTDEALEYIGEICQGDYRKAYNILELAVNSHCGFNIEITLDYIESLE 223

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
              +  D  G +  +   L+   ++  G            S+   A+  L    +I+ G 
Sbjct: 224 QSNIRADATGDEYYN--ILSAFQKSIRG------------SDADAAVHYLAR--LIKSGD 267

Query: 310 IQRTPRGRLLMPIAWQHLGIDIPH 333
           +  T   R L  +A + +G+  P+
Sbjct: 268 M--TSITRRLSVMAAEDIGLAYPN 289


>gi|300361690|ref|ZP_07057867.1| crossover junction endodeoxyribonuclease [Lactobacillus gasseri
           JV-V03]
 gi|300354309|gb|EFJ70180.1| crossover junction endodeoxyribonuclease [Lactobacillus gasseri
           JV-V03]
          Length = 426

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 82/356 (23%), Positives = 128/356 (35%), Gaps = 63/356 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
               L+RP+ L +F GQ +     +   +  K        +L  GPPG GKT+LAQ++AR
Sbjct: 6   PLADLIRPKDLSQFVGQKDLIEKERPLYQIIKKHVPI--SLLLWGPPGTGKTSLAQIIAR 63

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           E      + +  +  KA     + T      VL IDEIHR++  +++ L P +E+ ++ L
Sbjct: 64  EFDYPLATFNASIDNKAKLTQIINTYPYQSFVLLIDEIHRMTTTLQDFLLPYLENGRILL 123

Query: 137 M--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           +    E P    V    SR  +    T                        ED++ ++ R
Sbjct: 124 IGATTENPIMSIVPAVRSRCQIFEFKT---------------------LSDEDIEQVLVR 162

Query: 195 GAKL----TGLAVTDEAACEIAMRSRGTPRIAGRLLRR------------VRDFAEVAHA 238
             K         +  +A   IA+ + G  R+A  LL              VR F +  H 
Sbjct: 163 ALKEVFHFKDENIDRKAVKIIAISADGDLRVALNLLETIHAVNEDLSAEEVRQFVKGQHF 222

Query: 239 KTITREIADAALLRLAIDKMGFDQLD--LRYLTMIARNFG-----GGPVGIETISAGLSE 291
               +       L    D M     D  L YL ++ +N            I     GL+ 
Sbjct: 223 AYDRKATKHYDYLAAYSDSMAGSDTDAALYYLAVLLKNGDLPSVVRRLREIPYTYIGLAN 282

Query: 292 PRDAIEDLIE--------------PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           P  A + +I               P M     +  +P+  +   I WQ L  D  H
Sbjct: 283 PEQATQIVIAANQAEKIGMPKAKYPLMFATMLMCLSPKSGVFDEI-WQKLDEDTDH 337


>gi|257063510|ref|YP_003143182.1| Recombination protein MgsA [Slackia heliotrinireducens DSM 20476]
 gi|256791163|gb|ACV21833.1| Recombination protein MgsA [Slackia heliotrinireducens DSM 20476]
          Length = 446

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 76/323 (23%), Positives = 120/323 (37%), Gaps = 35/323 (10%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA---RE 77
            +RPRTL+E  GQ EA         A  A  + L  ++  GP G GKT++A ++A   R 
Sbjct: 22  RMRPRTLDELKGQQEAVGEGSWLHAAIAA--DTLSSIILFGPAGTGKTSIAHIIAETTRA 79

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNL---EDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           + V   +  G V     ++AA    L     R +LF+DEIHR +   ++ L  A+E+  +
Sbjct: 80  IFVEVSAIGGTVSDLRREIAAAEKRLYATGRRTILFVDEIHRFNRSQQDALLHAVENRTV 139

Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            L+    E P        +SR       +RV  L +   D     +     +        
Sbjct: 140 VLIGATTENPFFEVNSALISR-------SRVVELHSLSDDDIRQVLDAALAD-------- 184

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           +RG K     +  +AA  I   S G  R A   L      A  A           AA   
Sbjct: 185 ERGLKG-EFDLLPDAAEAIVTLSGGDARGALTTLELASGLARQAVED-------GAAKTP 236

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
                +  D + L     +        +  + ISA +   R +  D    +M +      
Sbjct: 237 DGRIPITADMVQLATPHRVLPYDKNKDMHYDIISAFIKSMRGSDPDAALYWMARMLDGGE 296

Query: 313 TPR--GRLLMPIAWQHLGIDIPH 333
            P+   R +  +A + +G   P 
Sbjct: 297 DPKFIARRIYILASEDIGNADPQ 319


>gi|58040097|ref|YP_192061.1| recombination factor protein RarA [Gluconobacter oxydans 621H]
 gi|58002511|gb|AAW61405.1| ATPase associated with chromosome architecture/replication
           [Gluconobacter oxydans 621H]
          Length = 470

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 73/344 (21%), Positives = 115/344 (33%), Gaps = 57/344 (16%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           ++   +  R  S+       LRP+ LE+  GQ              +     L  ++  G
Sbjct: 37  IEAPQVQRRPPSRTQPLADRLRPKRLEDVRGQDHLLGPEGTLTRMLER--GTLSSLILWG 94

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEI 114
            PG GKTT+A+++A   G+ +   S  V +   DL                  +LF+DEI
Sbjct: 95  GPGCGKTTIARLLAGRAGLFYSQISA-VFSGVADLRRAFEEADKKQAATGKGTLLFVDEI 153

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++   P +E   + L+    E PS       LSR  ++          N L D
Sbjct: 154 HRFNRAQQDGFLPYVERGTVVLVGATTENPSFALNAALLSRCQVLVL--------NRLDD 205

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
                       +E L    +       L +  EA   +   + G  R    LL  V   
Sbjct: 206 A----------SLESLLVHAEEEVG-RPLPLDPEARASLRAMADGDGRY---LLNMVEQL 251

Query: 233 AEVAHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
             +  +K +T     A L R A   D+   +  +L                   ISA   
Sbjct: 252 VALDPSKVLTPRDLAAILSRRAILYDRDREEHYNL-------------------ISALHK 292

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
             R +  D    +  +       PR   R L   A + +G   P
Sbjct: 293 SLRGSDPDAALYWFARMLEGGEDPRYIARRLTRFAAEDVGQADP 336


>gi|320093742|ref|ZP_08025601.1| AAA family ATPase [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319979327|gb|EFW10818.1| AAA family ATPase [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 447

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 81/338 (23%), Positives = 121/338 (35%), Gaps = 50/338 (14%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACS---NLKVFIEAAKARAEALDHVLFVGPPGLG 66
              S +      +RP  +EE  GQ         L+  +E A   + A+  V+  GPPG G
Sbjct: 15  PAYSPDAPLAVRMRPARIEEVVGQDHLLGEGAPLRRLLEPASGASVAVSSVVLWGPPGTG 74

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSI 119
           KTTLA +VAR     F   S  V +   D+  ++     R        VLF+DE+HR S 
Sbjct: 75  KTTLAYLVARTTSRRFEELSA-VSSGVRDIRDVVGGARRRLAAGGGETVLFVDEVHRFSK 133

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             ++ L PA+E+  + L+    E PS   +   LSR  L+      G     L +R    
Sbjct: 134 SQQDALLPAVENRWVVLVAATTENPSFSVIPPLLSRSLLLTLRPLDGAAVAGLIER---- 189

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                           RG       +TDEA   +   +    R +  LL      A  A 
Sbjct: 190 -----------ALADDRGLAG-AFTITDEARDALVRLAGSDARKSLTLLEAAAGAAAGAG 237

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
             +I     +AA  R  +        D+                    SA +   R +  
Sbjct: 238 GASIGLPQVEAAANRALVRWDQDQHYDVA-------------------SAFIKSMRGSDV 278

Query: 298 DLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           D    Y+ +       PR   R +M  A + +G+  P 
Sbjct: 279 DAALHYLARMIEAGEDPRFIARRVMIAASEEVGMAAPE 316


>gi|325680328|ref|ZP_08159888.1| recombination factor protein RarA [Ruminococcus albus 8]
 gi|324108037|gb|EGC02293.1| recombination factor protein RarA [Ruminococcus albus 8]
          Length = 423

 Score =  122 bits (306), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 64/327 (19%), Positives = 118/327 (36%), Gaps = 47/327 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+TL+E  GQ       K      +  +  + +++F GP G+GKTT+A+ +A 
Sbjct: 4   PLAEKIRPKTLDEIVGQTHLMGEGKPLRRIIE--SGTIPNLIFYGPSGVGKTTIARFIAE 61

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE-----DRDVLFIDEIHRLSIIVEEILYPAMED 131
              +     +G   A   D+  ++   E     +  +L++DEI  L+   ++ L   +E+
Sbjct: 62  NANMTMYKLNG-TSASVADIKNIIAETEMLSGMNGILLYLDEIQYLNKKQQQSLLEYIEN 120

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             + L+    E P        +SR T+            P   R            + + 
Sbjct: 121 GSITLISSTTENPYFYVYNAIISRSTVFEFKPVTPQQIQPAIRR----------AFDLMA 170

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE--VAHAKTITREIAD 247
             +     L      D     IA    G  R +   +      AE    + +T+  E   
Sbjct: 171 EDIGVSLTL-----EDGVIEHIARGCGGDVRKSINTVELCVLSAERDEENGRTVKMETVR 225

Query: 248 AALLR--LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
               R  +  D+ G +  D   L+ + ++  G            S+   A+       +I
Sbjct: 226 QLTQRSNMRYDREGDEHYD--ILSALQKSIRG------------SDENAALHYAAR--LI 269

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           + G I      R L+ IA + +G+  P
Sbjct: 270 EAGDI--ISLCRRLLVIASEDVGLAYP 294


>gi|317153252|ref|YP_004121300.1| MgsA AAA+ ATPase-like protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316943503|gb|ADU62554.1| MgsA AAA+ ATPase-like protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 407

 Score =  122 bits (306), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 73/327 (22%), Positives = 124/327 (37%), Gaps = 55/327 (16%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
            + +       +RP++L+EF GQ    + ++ F ++ +     L  +L  GPPG GK+TL
Sbjct: 4   EIEESQPLADRIRPKSLDEFVGQGHIRNRIEAFTKSKR-----LPSLLLFGPPGCGKSTL 58

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           A ++AR  G      S P       L AL   L   D+L +DE+HR S   ++   P +E
Sbjct: 59  AMLLARLTGKKSLRLSAPEAG----LTALRKQLPGHDILILDELHRFSKAQQDFFLPILE 114

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
             ++ L+    E PS    +  LSR  ++   T                        E+L
Sbjct: 115 SGEITLLATTTENPSFSVTRQLLSRLHVLRLRT---------------------LNREEL 153

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
            ++  RG +   L + +E+   +A  + G  R    L+    +  +   +  + RE    
Sbjct: 154 ISVAHRGTEALSLELEEESYALLASMAGGDARTLLNLIEYTAELPKDKRSVEVLRESLPE 213

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            ++R   D       D  Y                  SA +   R +  D    Y+    
Sbjct: 214 IVVRGDRDS------DSHYELA---------------SALIKSIRGSDPDAALYYLACLL 252

Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIPH 333
                PR   R L+  A + +G+  P 
Sbjct: 253 ESGEDPRFVTRRLIISASEDVGLGDPQ 279


>gi|317131450|ref|YP_004090764.1| AAA ATPase central domain protein [Ethanoligenens harbinense
           YUAN-3]
 gi|315469429|gb|ADU26033.1| AAA ATPase central domain protein [Ethanoligenens harbinense
           YUAN-3]
          Length = 423

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 74/327 (22%), Positives = 130/327 (39%), Gaps = 46/327 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP+TL+E  GQ    +   +     +     + +++F GP G+GKTT+A ++A+
Sbjct: 3   PLADRLRPKTLDEVVGQRHLLAPDMLLRRVVETGQ--IPNLIFYGPSGVGKTTVASILAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE-----DRDVLFIDEIHRLSIIVEEILYPAMED 131
           + G      +G  ++ A D+ A++  L+        +L++DEI  L+   ++ L   +ED
Sbjct: 61  QAGKTLHRLNGTNMSTA-DIKAIVGELDTFAGMGGVLLYLDEIQYLNKKQQQSLLEFIED 119

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
            ++ L+    E P        LSR T+    +           R                
Sbjct: 120 GRITLIASTTENPYFYIYNAILSRCTVFEFKSVPSAEIAKAVRR---------------A 164

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA-EVAHAKTITREIADA 248
             V    K   + V DE   +I+    G  R A   +  +   A E     T+T E A A
Sbjct: 165 FAVMEQDKGRTIRVPDEVVAQISTGCGGDVRKAINAVELLALAAREADGELTVTAEDAAA 224

Query: 249 ALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           A  + A   D+ G +  D   L+ + ++  G            S+P  A+  L    +++
Sbjct: 225 AAQKSAMKYDREGDEHYD--LLSALQKSMRG------------SDPDAAVHYLAR--LLE 268

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            G +      R LM  A + +G+  P 
Sbjct: 269 AGDLPSVC--RRLMVCACEDVGLAYPQ 293


>gi|254519289|ref|ZP_05131345.1| recombination factor protein RarA [Clostridium sp. 7_2_43FAA]
 gi|226913038|gb|EEH98239.1| recombination factor protein RarA [Clostridium sp. 7_2_43FAA]
          Length = 416

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 69/325 (21%), Positives = 133/325 (40%), Gaps = 46/325 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
               ++RP+TLE+F GQ +  +  K          + + + +  GPPG GKTTLA ++A 
Sbjct: 6   PLAEIMRPKTLEDFVGQKDILAKGKPLYNLI--TNKMIPNCILYGPPGTGKTTLANIMAN 63

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE-----DRDVLFIDEIHRLSIIVEEILYPAMED 131
            +   F   +    A   D+  +  +L+     +  V++IDE+   S   ++ L   +E+
Sbjct: 64  YVDRKFYKLNA-TTASVKDIQEITESLDSLLNYNGVVIYIDELQHFSKKQQQALLEFIEN 122

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
            ++ L+    E P     K  LSR  +                     + +N   I   K
Sbjct: 123 GRVTLIASTTENPYFAIHKAILSRCNIFKFEA----------------LNINDITIGLEK 166

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            I +   +   +  + EA   I   S+G  R A  +L    + +++ H K ++ E  ++ 
Sbjct: 167 AIKKLINEGIHVEYSLEALKYIGEISQGDYRKAYNILELTIN-SQLKHIKEVSVEYIESL 225

Query: 250 LL-RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
               +  D  G +  +   L+ + ++  G            S+P  AI  L    +I+ G
Sbjct: 226 NQSHMRADASGDEYYN--LLSALQKSIRG------------SDPDAAIHYLAR--LIKSG 269

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIPH 333
            +    R R+ + +A + +G+  P+
Sbjct: 270 NLTAIIR-RISVIVA-EDIGLSHPN 292


>gi|167383505|ref|XP_001736558.1| replication factor C small subunit [Entamoeba dispar SAW760]
 gi|165900974|gb|EDR27174.1| replication factor C small subunit, putative [Entamoeba dispar
           SAW760]
          Length = 610

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 58/235 (24%), Positives = 93/235 (39%), Gaps = 28/235 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+ LEE  GQ +  +    F    K   + +   +  GPPG GKTT+A ++       F
Sbjct: 50  RPKNLEEIIGQEDVLAIGTPFNTMIK--NDKIQSTILYGPPGCGKTTIAGIIKNNSKSTF 107

Query: 83  RSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
            S S    +K  D   +L + + R       +LF+DEIH L+ + ++   PA+E   + L
Sbjct: 108 VSMSAAT-SKKEDFKKVLNDAKHRKRLGMNTILFLDEIHSLNRLQQDTFLPAIESGTIIL 166

Query: 137 M--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           +    E PS       +SR  L+            L D   + I     + E   +    
Sbjct: 167 IGATTENPSFELNNALMSRCQLVTL--------KKLTDENVVKILRKAIDEEYYYS---- 214

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
                 + + +E    IA  S G  R A   L +V     + + K +  EI +  
Sbjct: 215 -----KIDIDNEGLHFIAAISDGDARNALNTLEKVFVHYNLMNEKVLKNEINEKG 264


>gi|260654418|ref|ZP_05859908.1| replication-associated recombination protein A [Jonquetella
           anthropi E3_33 E1]
 gi|260631051|gb|EEX49245.1| replication-associated recombination protein A [Jonquetella
           anthropi E3_33 E1]
          Length = 426

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 68/337 (20%), Positives = 119/337 (35%), Gaps = 59/337 (17%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E      +RPR+L+E+ G     +         +     +   +  GPPG+GKT L +++
Sbjct: 5   ETPLAERMRPRSLDEYRGHSSILAPGAPLRRFLEEGD--VPSCILYGPPGVGKTALVRLM 62

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYP 127
            R  G      +  V AK  +L  L+              + F+DE++  +   ++ L P
Sbjct: 63  GRVTGRELLEINA-VSAKVSELRDLVDRAADLRRLSGRSAIAFVDELYHFNRSQQDALLP 121

Query: 128 AMEDFQLDLM--VGEGPSARSVKINLSRFT-----LIAATTRVGLLTNPLQDRFGIPIRL 180
           ++E  ++ L+    E P     K  LSR        +     V +L + L DR       
Sbjct: 122 SVERGEVILVGTTTENPRFEINKTLLSRLLVFEIGPLEKEDLVEILKSALTDR------- 174

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
                       +RG     L+ +D+    IA  + G  R A   L  +     V+  +T
Sbjct: 175 ------------ERGLGELELSASDDVIEAIAASAGGDGRQALTRLEFLSRAIAVSGRRT 222

Query: 241 ITREIADAAL--LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
           I  +    +L    +  D+   D                       ISA +   R +  D
Sbjct: 223 IEEDDLTKSLPAAFVRHDRRQDDHY-------------------AVISAMIKSIRGSDPD 263

Query: 299 LIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
               ++ +        R   R LM +A + +G+  P 
Sbjct: 264 AAVYWLARLIEGGEDVRFIARRLMILAAEDVGLADPQ 300


>gi|184200999|ref|YP_001855206.1| hypothetical protein KRH_13530 [Kocuria rhizophila DC2201]
 gi|183581229|dbj|BAG29700.1| hypothetical protein [Kocuria rhizophila DC2201]
          Length = 556

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 51/165 (30%), Positives = 75/165 (45%), Gaps = 14/165 (8%)

Query: 21  LLRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
            +RPRTL+E  GQ       S L+  +  + +   A   V+  GPPG GKTT+AQV+AR 
Sbjct: 40  RMRPRTLDEVVGQKHLLRPGSPLRALVNGS-SGPAAPSSVILWGPPGTGKTTIAQVIARG 98

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAME 130
            G  F   S  + A   D+  ++              VLF+DEIHR +   ++ L P +E
Sbjct: 99  HGTTFVELSA-LTAGVKDVRRVMDEALTARDLHGRTTVLFLDEIHRFTKAQQDALLPGVE 157

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           +  + L+    E PS   +   LSR  ++            L DR
Sbjct: 158 NGWVILVAATTENPSFSVISPLLSRSLMLTLQPLERRDIGELLDR 202


>gi|255994886|ref|ZP_05428021.1| ATPase, AAA family [Eubacterium saphenum ATCC 49989]
 gi|255993599|gb|EEU03688.1| ATPase, AAA family [Eubacterium saphenum ATCC 49989]
          Length = 411

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 73/328 (22%), Positives = 123/328 (37%), Gaps = 59/328 (17%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP  LE+F GQ        +   A K      +  +F GP G GKTTLA+++A+    +F
Sbjct: 9   RPERLEDFIGQEHFLKKNALVYNAIKE--GRFESAVFYGPSGTGKTTLARIIAKMQDDSF 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDR--------DVLFIDEIHRLSIIVEEILYPAMEDFQL 134
              +   +    +L  +L   +DR          L++DEIHR +   ++ L  A+E+  +
Sbjct: 67  IQINAADV-GISELKKILAEAKDRFYGIISKSTYLYVDEIHRWNKSQQDSLLSALEEGYI 125

Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            ++    E P        LSR   I           PL +             +D+  ++
Sbjct: 126 KVIASTTENPFFEINNQILSRIRNI-------YEFKPLAN-------------DDIVKLL 165

Query: 193 QRGAKLTG-----LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           +RG  +       +   ++A   IA +S G  RIA   L  + +   +     IT E   
Sbjct: 166 KRGVDIFAGDGRVIDYDEDALMLIAEKSNGDARIALDTLGFILNS--LKGEDRITEEKVY 223

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
              +      M F++LD +Y                  SA     R +  D    Y+ + 
Sbjct: 224 E--ITYDRQYMKFNKLDDKY---------------NVFSALHKSMRGSDPDAAVHYLARL 266

Query: 308 GFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                  +  GR L+  A + +G+  P 
Sbjct: 267 LQGGEDVKVIGRRLLVAASEDVGLAYPQ 294


>gi|254584580|ref|XP_002497858.1| ZYRO0F15136p [Zygosaccharomyces rouxii]
 gi|238940751|emb|CAR28925.1| ZYRO0F15136p [Zygosaccharomyces rouxii]
          Length = 566

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 69/345 (20%), Positives = 124/345 (35%), Gaps = 70/345 (20%)

Query: 17  ADISLLRPRTLEEFTGQVEACSN----LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
                +RPR + E+ GQ    S     L  +I     R   +  ++  GPPG+GKTTLA+
Sbjct: 128 PLSEKVRPREMTEYVGQQHILSQEGGTLSKYI-----RQGIIPSMVLWGPPGVGKTTLAR 182

Query: 73  VVARELGVN-----FRSTSGPVIAKAGDLAALLTN-------LEDRDVLFIDEIHRLSII 120
           ++ +   V+         +    A   +L ++           + R VLFIDEIHR +  
Sbjct: 183 LLTKTASVHGKFQYTMIETSATKANTQELRSIFDKSKNDFHLTKRRTVLFIDEIHRFNKG 242

Query: 121 VEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAA----TTRVGLLTN---PLQ 171
            +++L P +E+  + L+    E PS +     +SR  +       T    ++ +    L 
Sbjct: 243 QQDLLLPHVENGDIVLIGATTENPSFQLNNALISRCHVFVLEQLSTNEACIVLSRGIALL 302

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
           ++    +      ++  ++I++    L                S G  R A  LL  V  
Sbjct: 303 NKCRRNVWGVDIPLKLPRSILEYIVDL----------------SVGDTRRALNLLEMVEI 346

Query: 232 FAEVAHAKTITREIADAALLRL---AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAG 288
            +     +    ++             D  G +  D                   TISA 
Sbjct: 347 SSRSIDRELSKHDVKKMVGQNDINTYYDTSGDNHYD-------------------TISAF 387

Query: 289 LSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
               R + E+    Y+ +       PR   R ++ IA + +G+  
Sbjct: 388 HKSVRGSNENASLFYLARMIQGGEDPRFIARRMIRIASEDVGLAD 432


>gi|3248955|gb|AAD09937.1| Holliday junction DNA helicase RuvB [Coxiella burnetii]
          Length = 114

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 45/99 (45%), Positives = 62/99 (62%)

Query: 236 AHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDA 295
                I   IA  AL  L +D  G D +D + L  I + F GGPVGIE+++A +SE R  
Sbjct: 2   RANGMINESIAKEALDLLNVDIRGLDVMDRKLLETIIKKFQGGPVGIESLAAAISEERGT 61

Query: 296 IEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
           IED+IEPY+IQ+GFI RTPRGR+   + +QH  + +P +
Sbjct: 62  IEDVIEPYLIQEGFILRTPRGRIATELTYQHFKLPLPTQ 100


>gi|332295959|ref|YP_004437882.1| AAA ATPase central domain protein [Thermodesulfobium narugense DSM
           14796]
 gi|332179062|gb|AEE14751.1| AAA ATPase central domain protein [Thermodesulfobium narugense DSM
           14796]
          Length = 420

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 73/331 (22%), Positives = 131/331 (39%), Gaps = 47/331 (14%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
              E +    +RP+ L+EF GQ           ++       L  V+  GPPG+GKTTLA
Sbjct: 5   FESEISLSQAIRPKNLDEFLGQSHLLRKDGTIYKSI--VNAKLRSVILYGPPGVGKTTLA 62

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNL---EDR---DVLFIDEIHRLSIIVEEIL 125
           +++A     NF   +  V++   +L  ++      + R    +LF+DE+HR +   ++ L
Sbjct: 63  KIIASYSKANFEILNA-VLSGVPELRKIIEKAIDDKKRGIETLLFVDEVHRWNKAQQDAL 121

Query: 126 YPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
            P +ED  +  +    E P    +K  LSR  L+          + L DR      +N+Y
Sbjct: 122 LPVLEDNTIRFVGATVENPFFYIIKPLLSRSLLLTLHPLNKEDLSKLFDR-----AINYY 176

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           +    K I+             +    I   ++   R    ++  + + +E       T 
Sbjct: 177 KRYKNKEII----------FDMQTKELIINLAQKDARYLLNIIELIVESSE-----EDTI 221

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
            ++  AL  +   K+ FD+   ++               +TISA +   R +  D    Y
Sbjct: 222 RLSKDALDGIIEKKLLFDKSSDQH--------------YDTISAFIKSIRGSDPDAAIYY 267

Query: 304 MIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           +         PR   R L+ +A + +G+  P
Sbjct: 268 LALMLNSGEDPRFIARRLIILASEDIGMADP 298


>gi|182418940|ref|ZP_02950197.1| ATPase, AAA family [Clostridium butyricum 5521]
 gi|237668523|ref|ZP_04528507.1| AAA ATPase, central domain protein [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|182377223|gb|EDT74791.1| ATPase, AAA family [Clostridium butyricum 5521]
 gi|237656871|gb|EEP54427.1| AAA ATPase, central domain protein [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 414

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 72/329 (21%), Positives = 117/329 (35%), Gaps = 54/329 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP  LE+F GQ +     K      K++   + + +  GPPG GKTTLA ++A 
Sbjct: 3   PLAERMRPTKLEDFVGQKQIIGEGKPLYNIIKSKN--IVNCILYGPPGTGKTTLANIMAN 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE-----DRDVLFIDEIHRLSIIVEEILYPAMED 131
            +   F   +    A   D+  + ++L+     +  V++IDE+   S   ++ L   +E 
Sbjct: 61  YVDRKFYKLNA-TTASVKDIQEIASSLDTLLGYNGVVVYIDELQHFSKKQQQSLLEFIEK 119

Query: 132 FQLDLM--VGEGPSARSVKINLSR---FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            Q+ L+    E P     K  LSR   FT    TT           +FG+          
Sbjct: 120 GQITLIASTTENPYFVLHKAILSRCNIFTFKPLTTD--------DIKFGVV--------- 162

Query: 187 DLKTIVQRGAKL-TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
                ++R  +    +  TD+A   IA  S+G  R A  +L                   
Sbjct: 163 ---KAIERAIENGMEIKYTDDAISYIAEISQGDYRKAYNILEL------------GIISS 207

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
               L        G +Q          R    G     ++SA     R +  D    Y+ 
Sbjct: 208 LKRTLEITVEYIAGLEQSH-------IRFDASGDEFYNSLSALQKSIRGSDADAAIHYLA 260

Query: 306 QQ-GFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +       T   R L  I  + +G+  P+
Sbjct: 261 RLIKSGNLTAIVRRLGVIVAEDIGLAHPN 289


>gi|182625717|ref|ZP_02953486.1| ATPase, AAA family [Clostridium perfringens D str. JGS1721]
 gi|177909119|gb|EDT71594.1| ATPase, AAA family [Clostridium perfringens D str. JGS1721]
          Length = 418

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 62/329 (18%), Positives = 120/329 (36%), Gaps = 54/329 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
               ++RP+ LE+  GQ           +  K +   + + +F GPPG+GKTTLA +++ 
Sbjct: 6   PLADIMRPKKLEDIVGQKHIVGEGTPLNKLIKNKN--IMNCIFYGPPGVGKTTLANIISN 63

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE-----DRDVLFIDEIHRLSIIVEEILYPAMED 131
                F   +    +   ++ ++ ++++        +L+IDE+   +   ++ L   +ED
Sbjct: 64  YTDKKFYKINA-TTSSIKEIQSITSDIDNLLNFKGIILYIDELQHFNKKQQQALLEFIED 122

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
            ++ L+    E P     K  LSR T+    T                        ED+ 
Sbjct: 123 GRVILIASTTENPYFAIHKAILSRSTIFQFKTV---------------------STEDII 161

Query: 190 TIVQRGAKLTGLAVTDEAACEIA-----MRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
             ++R            +  E         S+G  R A  +L       E  +       
Sbjct: 162 IALERAVSKLEKEGYVISLEEGVLKYIGEISQGDVRKAYTVLELAIKSQEKDNILLNKEY 221

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +       L  D  G D  +   L+ + ++  G            S+P  +I  L    +
Sbjct: 222 VEKLGQSNLKSDSSGDDYYN--LLSALQKSIRG------------SDPDASIHYLAR--L 265

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           I+ G +    R R+ +  A + +G+  P+
Sbjct: 266 IKGGNMDSVIR-RIGVIAA-EDIGLAHPN 292


>gi|323466477|gb|ADX70164.1| Helicase subunit of the Holliday junction resolvase related ATPase
           [Lactobacillus helveticus H10]
          Length = 424

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 71/320 (22%), Positives = 119/320 (37%), Gaps = 41/320 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+TL+E  GQ E     K      + +      ++  GPPG GK++LAQ++A+
Sbjct: 10  PLADKMRPQTLDEVVGQQELLGEDKPLRRIIEQKVNI--SLILWGPPGTGKSSLAQIIAK 67

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           +        +  +  K      + T      VL IDEIHR++  +++ L P +E+  + L
Sbjct: 68  QFDYPLAKFNASIDNKGKLDQFIKTYPYQPFVLLIDEIHRMTKNLQDFLLPYLENGHILL 127

Query: 137 M--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           +    E P    V    SR  +             L D+    +         LK  V  
Sbjct: 128 VGATTENPIMSIVPAIRSRCQIFEF--------KALNDQNIEIV---------LKRAVTE 170

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
             KL    +  +A   IA+ + G  R+A  +L  V   A      TI      A     +
Sbjct: 171 VLKLKKEEIESDALKLIAIAADGDLRVALNILETV--HAINPEELTIQGVKNFAKGQNFS 228

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
            DK      D  YL   + +  G     +T +A                +++ G +    
Sbjct: 229 YDKKATKHYD--YLAAYSDSMAGS----DTDAAL----------YYLAVLLKNGDLPSVV 272

Query: 315 RGRLLMPIAWQHLGIDIPHR 334
             R L  I + ++G+  P +
Sbjct: 273 --RRLREIPYTYIGLANPQQ 290


>gi|323697890|ref|ZP_08109802.1| AAA ATPase central domain protein [Desulfovibrio sp. ND132]
 gi|323457822|gb|EGB13687.1| AAA ATPase central domain protein [Desulfovibrio desulfuricans
           ND132]
          Length = 407

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 69/326 (21%), Positives = 125/326 (38%), Gaps = 55/326 (16%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
            + +       +RP +L++F GQ    + ++ F     A+++ +  +L  GPPG GK+TL
Sbjct: 4   EIEESHPLADRIRPASLDDFVGQGHIRNRIEAF-----AQSKRMPSLLLFGPPGCGKSTL 58

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           A ++A+  G  +   S P       L AL   L  +++L +DE+HR S   ++   P +E
Sbjct: 59  ALLLAQLTGKKYLRVSAPEAG----LTALRKMLPGQEILILDELHRFSKAQQDFFLPILE 114

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
             ++ L+    E PS    +  LSR  ++                            E+L
Sbjct: 115 SGEITLLATTTENPSFSVTRQLLSRLHVLRL---------------------RQLSREEL 153

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             +  RGA+   + + +E+   +A  + G  R    LL    +  +        RE    
Sbjct: 154 VDVSHRGARELNVELEEESHRMLAAMAGGDARTLLNLLEYTAELPKDKRCPECLRESLPE 213

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
             + +  D+ G    +L                   +SA +   R +  D    Y+    
Sbjct: 214 --IVVRGDRDGDSHYEL-------------------VSAMIKSIRGSDPDAALYYLACLL 252

Query: 309 FIQRTPR--GRLLMPIAWQHLGIDIP 332
                PR   R L+  A + +G+  P
Sbjct: 253 ESGEDPRFVTRRLVISASEDVGLGDP 278


>gi|169343695|ref|ZP_02864694.1| ATPase, AAA family [Clostridium perfringens C str. JGS1495]
 gi|169298255|gb|EDS80345.1| ATPase, AAA family [Clostridium perfringens C str. JGS1495]
          Length = 418

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 61/329 (18%), Positives = 120/329 (36%), Gaps = 54/329 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
               ++RP+ LE+  GQ           +  K +   + + +F GPPG+GKTTLA +++ 
Sbjct: 6   PLADIMRPKKLEDIVGQKHIVGEGTPLNKLIKNKN--IMNCIFYGPPGVGKTTLANIISN 63

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE-----DRDVLFIDEIHRLSIIVEEILYPAMED 131
                F   +    +   ++ ++ ++++        +L+IDE+   +   ++ L   +ED
Sbjct: 64  YTDKKFYKINA-TTSSIKEIQSITSDIDNLLNFKGIILYIDELQHFNKKQQQALLEFIED 122

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
            ++ L+    E P     K  LSR T                       +      ED+ 
Sbjct: 123 GRVILIASTTENPYFAIHKAILSRST---------------------IFQFKPVSTEDII 161

Query: 190 TIVQRGAKLTGLAVTDEAACEIA-----MRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
             ++R            +  E         S+G  R A  +L       E  +       
Sbjct: 162 IALERAVSKLEKEGYVISLEEGVLKYIGEISQGDVRKAYTVLELAIKSQEKNNILLNKEY 221

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           + +     L  D  G D  +   L+ + ++  G            S+P  +I  L    +
Sbjct: 222 VENLGQSNLKSDSSGDDYYN--LLSALQKSIRG------------SDPDASIHYLAR--L 265

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           I+ G +    R R+ +  A + +G+  P+
Sbjct: 266 IKGGNMDSVIR-RIGVIAA-EDIGLAHPN 292


>gi|207093215|ref|ZP_03241002.1| Holliday junction DNA helicase B [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 138

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 58/128 (45%), Positives = 84/128 (65%), Gaps = 1/128 (0%)

Query: 204 TDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQL 263
            +E+A EIA RSRGTPRIA RLL+RVRDFA V ++  +   I   AL  L ++++GFD+ 
Sbjct: 2   KEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMDLNITLHALNELGVNELGFDEA 61

Query: 264 DLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIA 323
           DL YL+++A    G PVG+ TI+A + E    IED+IEP+++  G+++RT +GR+  P  
Sbjct: 62  DLAYLSLLANA-QGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPKT 120

Query: 324 WQHLGIDI 331
              L I  
Sbjct: 121 HALLKIPT 128


>gi|158320717|ref|YP_001513224.1| recombination factor protein RarA [Alkaliphilus oremlandii OhILAs]
 gi|158140916|gb|ABW19228.1| AAA ATPase central domain protein [Alkaliphilus oremlandii OhILAs]
          Length = 420

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 66/328 (20%), Positives = 130/328 (39%), Gaps = 47/328 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP  LE+  GQ     + K+     +++  A+ +++F GP G GKTT+A ++A+
Sbjct: 3   PLADRVRPTKLEDIVGQKHILGSGKLLNRILESK--AIPNMIFYGPSGTGKTTVANIIAQ 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE-----DRDVLFIDEIHRLSIIVEEILYPAMED 131
                F   +G   A   D+  ++  +      +  +L+IDE+H L+   ++ +   +E+
Sbjct: 61  SSNKKFYKING-TNANIEDIKRVIAQIGTLHTMNGILLYIDELHYLNKRQQQSILEYIEN 119

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             + L+    E  +       LSR T++           PL     I         E+ +
Sbjct: 120 GDIILIGSTTENVNFSIFNALLSRCTIMEF--------KPLSIEDLIFGLKKVISSEEHR 171

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
             ++       ++  +EA   IA  S G  R +   L  + +   + + + I  +I  A 
Sbjct: 172 LNIK-------ISYEEEALHYIAEVSNGDLRRSLNTLELIINTYAIYNPQVIDIDIPKAV 224

Query: 250 L----LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
                     D+ G    +   L+   ++  G            S+ + +I  L    +I
Sbjct: 225 ECSQSKIANYDRDGDAHYN--LLSFFQKSIRG------------SDEQASIHALAR--LI 268

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           + G +  T   R L+ IA + +G+  P 
Sbjct: 269 KAGDL--TSICRRLLVIAAEDIGLAYPQ 294


>gi|91216068|ref|ZP_01253036.1| putative AAA family ATPase protein [Psychroflexus torquis ATCC
           700755]
 gi|91185585|gb|EAS71960.1| putative AAA family ATPase protein [Psychroflexus torquis ATCC
           700755]
          Length = 425

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 63/328 (19%), Positives = 116/328 (35%), Gaps = 50/328 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP+ L ++  Q           +  K   + +  ++  GPPG+GKTTLA ++++
Sbjct: 4   PLAERLRPKQLSDYLSQTHLIGEKGTISQMIKR--DLIPSIILWGPPGIGKTTLANLISK 61

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED--------RDVLFIDEIHRLSIIVEEILYPA 128
           E   +F + S  + +   D+  ++   +           +LFIDEIHR S   ++ L  A
Sbjct: 62  ETKRSFFTLSA-ISSGVKDVREVIQKAKQDQGLFEQKNPILFIDEIHRFSKSQQDSLLGA 120

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           +E   + L+    E PS   +   LSR        +V  L    ++   + +     E E
Sbjct: 121 VEKGWITLIGATTENPSFEVIPALLSRC-------QVYTLNEFSKEDLILLLNRAKSEDE 173

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
            L        K   L  T          +R    +   ++  V D   +     +  +I 
Sbjct: 174 YLSK------KNITLKETTSLLRLSGGDARKLLNMFELIVNSVDDENIIITNDLVEEKIQ 227

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
                    DK G    D+                   ISA +   R +  +    ++ +
Sbjct: 228 QKT---ARYDKTGGQHYDI-------------------ISAFIKSIRGSDPNAAVYWLAR 265

Query: 307 QGFIQRTPR--GRLLMPIAWQHLGIDIP 332
                   +   R L+ ++ + +G   P
Sbjct: 266 MIEGGEDVKFIARRLIILSSEDIGNANP 293


>gi|321264368|ref|XP_003196901.1| DNA-dependent ATPase MGS1 (Maintenance of genome stability protein
           1) [Cryptococcus gattii WM276]
 gi|317463379|gb|ADV25114.1| DNA-dependent ATPase MGS1 (Maintenance of genome stability protein
           1), putative [Cryptococcus gattii WM276]
          Length = 627

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 74/336 (22%), Positives = 124/336 (36%), Gaps = 34/336 (10%)

Query: 23  RPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           RP  + ++ GQ +       L+V IEA K     +   +  GPPG GKTTLA+++A+  G
Sbjct: 147 RPLEISQYIGQSDIVGPGSLLRVQIEAGKL----IGSCILWGPPGCGKTTLARLIAKSSG 202

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
            +F+  S    +   D+  +    +        R VL IDEIHR +   +++L P +E  
Sbjct: 203 ADFKELSA-TSSGTQDVRQVFEKAKNGLQMTGRRTVLMIDEIHRFNRAQQDLLLPYVEKG 261

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN---FYEIED 187
            + L+    E PS +     LSR  +             +       I  +    Y   +
Sbjct: 262 WIQLIGATTENPSFKVNGALLSRCQVFTLHAHSPESLQIILRNAVQTISESEPIPYHPPE 321

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           L   +   A   G A       E+A+R+  T   A R  +  R  A+    + +  E   
Sbjct: 322 LIPFLADVAD--GDARQALNGLELALRTCQTMDEAARAEKSQR--AKFVGDEKVKEERQK 377

Query: 248 AALLRLAIDKMGFDQ---LDLRYLTMIARNFGG-----GPVGIETISAGLSEPRDAIEDL 299
                   +    DQ    D   +  + R         G    + ISA     R +    
Sbjct: 378 DVFDDAVEEAEEEDQQKKRDEEIMDAVRRGLQKGYNRTGEERYDMISALHKCLRGSDGSA 437

Query: 300 IEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
              ++ +       P    R L+ +A + +G+   H
Sbjct: 438 AMYWLARMITGGEDPLYIARRLIVVASEDVGLADNH 473


>gi|28378233|ref|NP_785125.1| recombination factor protein RarA [Lactobacillus plantarum WCFS1]
 gi|28271068|emb|CAD63973.1| chromosome segregation helicase (putative) [Lactobacillus plantarum
           WCFS1]
          Length = 420

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 67/321 (20%), Positives = 117/321 (36%), Gaps = 43/321 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP++LE+  GQ +     +   +           ++  GPPG GKT+LAQ++A 
Sbjct: 6   PLADRMRPQSLEQMVGQQDLLKAGQPLRQIIDQHVNIP--LILWGPPGTGKTSLAQIIAS 63

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           +    F + +     KA    A+    E   VL IDEIHR++  +++ L P +E+  + L
Sbjct: 64  QDDYPFVAFNASTENKAQLTKAIAQYPEQSFVLLIDEIHRMTKTLQDFLLPYLENGHVML 123

Query: 137 M--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           +    E P    V    SR  +            PL D               L+  V  
Sbjct: 124 IGSTTENPIMSIVPAIRSRCQIFEF--------QPLSDTDIEIA---------LRRAVTD 166

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL- 253
              LT   V  +A   IA+ + G  RIA  +L  +     +   +     +   A  +  
Sbjct: 167 IYNLTDDQVDAKALNLIAISAEGDLRIALNILETLH---AIDQKQITVAAVQHFAQQQHF 223

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
           + D+      D  YL+  + +  G           +    D +  ++             
Sbjct: 224 SYDRKATKHYD--YLSAYSDSMAGSDTDAALYYLTILLKNDDLPSVV------------- 268

Query: 314 PRGRLLMPIAWQHLGIDIPHR 334
              R L  I + ++G+  P +
Sbjct: 269 ---RRLREIPYTYIGLANPEQ 286


>gi|284032278|ref|YP_003382209.1| AAA ATPase central domain-containing protein [Kribbella flavida DSM
           17836]
 gi|283811571|gb|ADB33410.1| AAA ATPase central domain protein [Kribbella flavida DSM 17836]
          Length = 488

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 77/342 (22%), Positives = 119/342 (34%), Gaps = 49/342 (14%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            +RPR+L+E  GQ    +         +   +    +L  GPPG GKTT+A VV+ +   
Sbjct: 34  RMRPRSLDELVGQQHLLAPGSPLRRLVE--GDQPMSLLLWGPPGTGKTTIAAVVSHQTNR 91

Query: 81  NFRSTSGPVIAKAGDLAALLTNLED---------RDVLFIDEIHRLSIIVEEILYPAMED 131
            F   S  V A   D+  ++                VLFIDE+HR +   ++ L P +E+
Sbjct: 92  KFVELSA-VTAGVKDVRQVIDAARRELSRPGGSVETVLFIDEVHRFTKAQQDALLPGVEN 150

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             + L+    E P    +   LSR  L+   +        L DR                
Sbjct: 151 RWVTLVAATTENPFFSVISPLLSRSLLLTLESLTDDDIAVLLDR---------------A 195

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
              +RG      AV  +A   +   + G  R A   L      A+   A         A 
Sbjct: 196 LADERGLNG-EYAVAPDARDHLLRMAGGDARRALTYLEAAAGGAKAKAAPKDKAPQDRAP 254

Query: 250 LLRLAIDKMGFDQ------------LDLRYLTM-----IARNFGGGPVGIETISAGLSEP 292
             +   DK   D+            +DL+ L         R    G    +  SA +   
Sbjct: 255 KDKAPKDKAPEDEDAAEEPGHEPILIDLKTLETAVDRAAVRYDRAGDQHYDVASALIKSI 314

Query: 293 RDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           R +  D    Y+ +       PR   R L+  A + +G+  P
Sbjct: 315 RGSDVDAAMHYLARMVEAGEDPRFIARRLVISASEDIGMGDP 356


>gi|224437384|ref|ZP_03658355.1| recombination factor protein RarA [Helicobacter cinaedi CCUG 18818]
          Length = 415

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 70/326 (21%), Positives = 123/326 (37%), Gaps = 54/326 (16%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
            +LLRP +L++F  Q    +      +  K    AL H  F GPPG GKTTLA ++A+EL
Sbjct: 5   AALLRPESLQDFIAQEHIIAPDTPLFKMLK--HNALSHCFFYGPPGSGKTTLAALIAKEL 62

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
              F S +     K  +L   + + E+   + ++FIDE+HRL+   +E+L P ME +   
Sbjct: 63  NKPFMSYNATSF-KIEELRQFVKSYENTLFQPIIFIDEVHRLTRTQQEVLLPIMESYS-A 120

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           +++G                          LTN ++ R      L  +    L +I+++ 
Sbjct: 121 IILGASTYNPFHS-----------------LTNAIRSRS-FLFELKPHSNAHLDSILEKA 162

Query: 196 A------KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
                  K   + +  +A   +   S G  R    LL  +    E   +    + +   A
Sbjct: 163 LAYVKDSKHIHIELESQAREYLIHSSVGDARAMLNLLDAIISTGEHHISLQGLKALRPYA 222

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           L     D     +     ++ + ++  G  V                      Y+ +   
Sbjct: 223 L----HDGASESESHYTLISALIKSIRGSDVNASV-----------------YYLARLIA 261

Query: 310 IQRTPR--GRLLMPIAWQHLGIDIPH 333
               P    R L+ +A + +G   P+
Sbjct: 262 GNENPEFIARRLVILASEDIGNANPN 287


>gi|46580096|ref|YP_010904.1| recombination factor protein RarA [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120602446|ref|YP_966846.1| recombination factor protein RarA [Desulfovibrio vulgaris DP4]
 gi|46449512|gb|AAS96163.1| ATPase, AAA family [Desulfovibrio vulgaris str. Hildenborough]
 gi|120562675|gb|ABM28419.1| Recombination protein MgsA [Desulfovibrio vulgaris DP4]
 gi|311233905|gb|ADP86759.1| AAA ATPase central domain protein [Desulfovibrio vulgaris RCH1]
          Length = 411

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 72/318 (22%), Positives = 110/318 (34%), Gaps = 55/318 (17%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
             LRP  LE F GQ      ++  + A +     L  +L  GPPG GK+TLA ++A+   
Sbjct: 9   ERLRPTVLEGFVGQTHLTQRIEALLRANR-----LPSLLLFGPPGCGKSTLALLLAKARS 63

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137
            N    S P       L  L   L   D+L +DE+HR S   ++   P +E   + ++  
Sbjct: 64  ANVLRLSAPEAG----LQHLRKQLHGVDILVLDELHRFSKAQQDFFLPLLESGDITMLAT 119

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
             E PS    +  LSR  ++                             +L  + +RGA 
Sbjct: 120 TTENPSFSVTRQLLSRLHVLRL---------------------RPLGRAELLELGRRGAV 158

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257
              + + D+    +A  S G  R    LL  V    E        R       +    DK
Sbjct: 159 AQEVQIEDDVLDLLASMSHGDARTMLNLLEYVAALPEDKRDIEGVRSAMPE--IVSRHDK 216

Query: 258 MGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR-- 315
            G +  +L                    SA +   R +  D    Y+         PR  
Sbjct: 217 DGDNHYELA-------------------SALIKSIRGSDPDAALYYLACLLEGGEDPRFV 257

Query: 316 GRLLMPIAWQHLGIDIPH 333
            R L+  A + +G+  P 
Sbjct: 258 CRRLILSASEDVGLADPQ 275


>gi|163915553|gb|AAI57421.1| Unknown (protein for MGC:179840) [Xenopus laevis]
          Length = 339

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 78/205 (38%), Gaps = 40/205 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
                +RP TL  + GQ +       L+  ++A       +  ++  GPPG GKTTLA +
Sbjct: 149 PLADKMRPTTLNNYMGQNKVLGENTMLRNLLQA-----NDIPSIILWGPPGCGKTTLAHI 203

Query: 74  VARELGVNFRST--SGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEI 124
           +A+    +           A   D+   +   +        + +LF+DEIHR + + ++ 
Sbjct: 204 IAKNAQKSSSRFVTLSATSASTSDVREFIKQAQNEQRLFKRKTILFVDEIHRFNKMQQDT 263

Query: 125 LYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             P +E   + L+    E PS +     LSR  +I                         
Sbjct: 264 FLPHVECGTITLIGATTENPSFQVNTALLSRCRVIVL---------------------EK 302

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEA 207
             +E ++TI+ R     GL V  + 
Sbjct: 303 LSVEAMETILMRAVDSLGLKVLKDG 327


>gi|188588213|ref|YP_001920502.1| recombination factor protein RarA [Clostridium botulinum E3 str.
           Alaska E43]
 gi|251781076|ref|ZP_04823996.1| ATPase, AAA family [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|188498494|gb|ACD51630.1| ATPase, AAA family [Clostridium botulinum E3 str. Alaska E43]
 gi|243085391|gb|EES51281.1| ATPase, AAA family [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 414

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 73/328 (22%), Positives = 127/328 (38%), Gaps = 52/328 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP  LE+F GQ +     K      K++   + + +  GPPG GKTTLA ++A 
Sbjct: 3   PLAERMRPTKLEDFVGQKQIIGEGKPLYNIIKSKN--IVNCILYGPPGTGKTTLANIMAN 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE-----DRDVLFIDEIHRLSIIVEEILYPAMED 131
            +   F   +    A   D+  + ++L+     +  V++IDE+   S   ++ L   +E 
Sbjct: 61  YVDRKFYKLNA-TTASVKDIQEIASSLDTLLGYNGVVVYIDELQHFSKKQQQSLLEFIEK 119

Query: 132 FQLDLM--VGEGPSARSVKINLSR---FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            Q+ L+    E P     K  LSR   FT    TT           +FG+          
Sbjct: 120 GQITLIASTTENPYFVLHKAILSRCNIFTFKPLTTD--------DIKFGVV--------- 162

Query: 187 DLKTIVQRGAKL-TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
                ++R  +    +  TD+A   IA  S+G  R A  +L      +     +     I
Sbjct: 163 ---KAIERAIENGMEIKYTDDAISYIAEISQGDYRKAYNILELGIISSLKRTLEITAEYI 219

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
            +     +  D  G +  +   L+ + ++  G  V              AI  L    +I
Sbjct: 220 EELEQSHIRFDASGDEFYNS--LSALQKSIRGSDVDA------------AIHYLAR--LI 263

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           + G +    R RL + +A + +G+  P+
Sbjct: 264 KSGNLTAIVR-RLGVIVA-EDIGLAHPN 289


>gi|296116064|ref|ZP_06834684.1| recombination factor protein RarA [Gluconacetobacter hansenii ATCC
           23769]
 gi|295977418|gb|EFG84176.1| recombination factor protein RarA [Gluconacetobacter hansenii ATCC
           23769]
          Length = 431

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 69/329 (20%), Positives = 114/329 (34%), Gaps = 54/329 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP  +E+  GQ    +  +         +  L  ++F GPPG GKTTLA+++A 
Sbjct: 12  PLAEALRPERIEDVIGQAHLMAPDRPIGRMV--ASGRLSSMIFWGPPGTGKTTLARILAA 69

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE--------DRDVLFIDEIHRLSIIVEEILYPA 128
             G+ F   S  V++   DL   L   +           VLF+DEIHR +   ++ L P 
Sbjct: 70  RSGMAFEQISA-VMSGMADLKKALARAQGLRQQGQTKGMVLFVDEIHRWNKAQQDALLPY 128

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           +ED  + L+    E PS    +   SR  ++          + L +R    +        
Sbjct: 129 VEDGTIVLIGATTENPSFELNRALASRAQVMVLERLATHDLSILLERAEAHLG------- 181

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
                         L +  EA  E+   + G  R    +   + D    A    +T E  
Sbjct: 182 ------------HTLPLEAEARTELLNMADGDGRYLLVMAEALSDLGPDA---AVTPEQL 226

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
              + R A        +    L+   ++  G  V                      ++ +
Sbjct: 227 HTLVQRKAHAGDKGSDIHHALLSAFQKSIRGSDV-----------------QAALYWLAR 269

Query: 307 QGFIQRTPRG--RLLMPIAWQHLGIDIPH 333
                  PR   R LM +A + +G+  P 
Sbjct: 270 LLRSGEPPRAILRRLMVMATEEVGLADPR 298


>gi|291534006|emb|CBL07119.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [Megamonas hypermegale ART12/1]
          Length = 372

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 64/289 (22%), Positives = 105/289 (36%), Gaps = 46/289 (15%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVL 109
           ++  GPPG GKTTLA+++A      F   +  V A   D+  ++            R ++
Sbjct: 1   MILYGPPGTGKTTLAKMIAGMTKSEFSRLNA-VSAGISDVRKIIEKADENRRYYRKRTII 59

Query: 110 FIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           F+DEIHR +   +++L P +ED ++ L+    E P        LSR  ++          
Sbjct: 60  FLDEIHRFNKAQQDVLLPYVEDGRIILIGATTENPYFEVNHALLSRVRVVKL-------- 111

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             L ++  I I     E +       RG         DE    IA  + G  R+A  +L 
Sbjct: 112 ELLDEQNLIDILKVALEDKV------RGLGKYEFKYDDEVLSIIAQYAGGDARVALNILE 165

Query: 228 RVRDFA-EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETIS 286
           +V D A E  H        +  +      DK G +  D+                   +S
Sbjct: 166 QVGDVALEQNHNINKEIIESIISEKIQTYDKNGDNHYDI-------------------VS 206

Query: 287 AGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           A +   R +  D    Y+ +            R +   A + +G   P 
Sbjct: 207 AFIKSMRGSDPDAALHYLARMLVAGEDINFIARRIAICASEDVGNADPQ 255


>gi|152989818|ref|YP_001355540.1| recombination factor protein RarA [Nitratiruptor sp. SB155-2]
 gi|151421679|dbj|BAF69183.1| ATPase, AAA family [Nitratiruptor sp. SB155-2]
          Length = 391

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 76/320 (23%), Positives = 127/320 (39%), Gaps = 49/320 (15%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +   RP++LEEF GQ +  +    F +  K R  AL H  F GPPG GKTTLA++VA+E 
Sbjct: 1   MDRYRPKSLEEFIGQRQLLAPEAPFYKLLKQR--ALPHSFFFGPPGTGKTTLARIVAKEY 58

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
             +F   +   + K  ++  ++   +    + +LFIDE+HRLS   +E+L P ME  +  
Sbjct: 59  ESDFFELNATSL-KIEEIRKIVHRYKGSFIKPLLFIDEVHRLSKNQQEVLLPIME-KEEA 116

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           L++G                          LT  ++ R  +         EDL  +V R 
Sbjct: 117 LILGASTENPFFS-----------------LTAAIRSRS-MLFEFRPLNEEDLNQLVHRV 158

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255
            +    ++ +EA   I   S+G  R    LL+ +   + +    T+    + A +     
Sbjct: 159 CQNEECSIDEEAKEYIIRISQGDAR---NLLKFLTKASLIESHITLQLLRSLAPMSYHEG 215

Query: 256 DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR 315
                   DL   + + ++  G  V                 D    Y+ +       P 
Sbjct: 216 SNSKETHYDLA--SALIKSIRGSDV-----------------DAALYYLARLIEGGEPPE 256

Query: 316 --GRLLMPIAWQHLGIDIPH 333
              R L+  A + +G   P+
Sbjct: 257 FIARRLVIFASEDIGNANPN 276


>gi|6324111|ref|NP_014181.1| Mgs1p [Saccharomyces cerevisiae S288c]
 gi|1730822|sp|P40151|WRIP1_YEAST RecName: Full=DNA-dependent ATPase MGS1; AltName: Full=Maintenance
           of genome stability protein 1
 gi|1302233|emb|CAA96121.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|51013831|gb|AAT93209.1| YNL218W [Saccharomyces cerevisiae]
 gi|190409192|gb|EDV12457.1| DNA-dependent ATPase MGS1 [Saccharomyces cerevisiae RM11-1a]
 gi|207341862|gb|EDZ69804.1| YNL218Wp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|256272347|gb|EEU07330.1| Mgs1p [Saccharomyces cerevisiae JAY291]
 gi|259149146|emb|CAY82388.1| Mgs1p [Saccharomyces cerevisiae EC1118]
 gi|285814444|tpg|DAA10338.1| TPA: Mgs1p [Saccharomyces cerevisiae S288c]
 gi|323307497|gb|EGA60768.1| Mgs1p [Saccharomyces cerevisiae FostersO]
 gi|323346818|gb|EGA81097.1| Mgs1p [Saccharomyces cerevisiae Lalvin QA23]
 gi|323352874|gb|EGA85176.1| Mgs1p [Saccharomyces cerevisiae VL3]
          Length = 587

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 65/336 (19%), Positives = 114/336 (33%), Gaps = 41/336 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV-- 74
                LRP+ L ++ GQ    S     +     +   +  ++  GPPG+GKT+LA+++  
Sbjct: 134 PLSEKLRPKELRDYVGQQHILSQDNGTLFKYIKQG-TIPSMILWGPPGVGKTSLARLLTK 192

Query: 75  -----ARELGVNFRSTSGPVIAKAG---DLAALLTN-------LEDRDVLFIDEIHRLSI 119
                + E  V  R       A      +L  +           + R VLFIDEIHR + 
Sbjct: 193 TATTSSNESNVGSRYFMIETSATKANTQELRGIFEKSKKEYQLTKRRTVLFIDEIHRFNK 252

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           + +++L P +E+  + L+    E PS +     +SR  +             +  R    
Sbjct: 253 VQQDLLLPHVENGDIILIGATTENPSFQLNNALISRCLIFVLEKLNVNELCIVLSRGIAL 312

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
           +       + +  I         L ++      +   S G  R A  +L  +        
Sbjct: 313 LNK---CRKQVWNI------ENPLKLSRSILEYVVDLSVGDTRRALNMLEMIEVSTRERK 363

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
           A      I D   +       G +                G    +TISA     R   E
Sbjct: 364 ADEEELSIDDVRDIIKNNSSNGLNTY----------YDPKGDNHYDTISAFHKSIRGGDE 413

Query: 298 DLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
           +    Y+ +       P    R ++ IA + +G+  
Sbjct: 414 NASLYYLARMLQGGEDPLYVARRMIRIASEDIGLRD 449


>gi|88856257|ref|ZP_01130917.1| ATPase related to the helicase subunit [marine actinobacterium
           PHSC20C1]
 gi|88814576|gb|EAR24438.1| ATPase related to the helicase subunit [marine actinobacterium
           PHSC20C1]
          Length = 472

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 76/332 (22%), Positives = 114/332 (34%), Gaps = 55/332 (16%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH--VLFVGPPGLGKTTLAQVVAREL 78
            +RP  LEE  GQ          +  A     +     ++  GPPG GKTT+A+ +AR  
Sbjct: 46  RMRPLVLEEIVGQKHLLQRGSPLMSLASDVGGSHGSASIILWGPPGTGKTTIAKAIARGS 105

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAMED 131
              F   S  V A   D+   +              VLF+DEIHR +   ++ L P +E+
Sbjct: 106 QRKFVELSA-VTAGVKDVRQTIEEALTARDLYGVSTVLFLDEIHRFTKAQQDALLPGVEN 164

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             + L+    E PS   +   LSR  L+            L DR                
Sbjct: 165 GWIILIAATTENPSFSVISPLLSRSLLLTLNQLDDDEVGELVDRAVTDA----------- 213

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA----KTITREI 245
               RG K   + +  EA   +   S G  R A   L      A           +T E 
Sbjct: 214 ----RGLK-NAVVLEPEARALLVRLSSGDARRALTALEASAVSAANHSDAQSPAVVTAEH 268

Query: 246 ADAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
             +A+ R     D+ G +  D+                   ISA +   R +  D    Y
Sbjct: 269 VASAVDRALLRYDRQGDEHYDV-------------------ISAFIKSVRGSDVDAAIHY 309

Query: 304 MIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           + +       PR   R ++  A + +G+  P 
Sbjct: 310 LARMIEAGEDPRFIARRIIISAAEDVGVADPQ 341


>gi|151944326|gb|EDN62604.1| protein with DNA-dependent ATPase and ssDNA annealing activities
           involved in maintenance of genome [Saccharomyces
           cerevisiae YJM789]
          Length = 587

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 65/336 (19%), Positives = 114/336 (33%), Gaps = 41/336 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV-- 74
                LRP+ L ++ GQ    S     +     +   +  ++  GPPG+GKT+LA+++  
Sbjct: 134 PLSEKLRPKELRDYVGQQHILSQDNGTLFKYIKQG-TIPSMILWGPPGVGKTSLARLLTK 192

Query: 75  -----ARELGVNFRSTSGPVIAKAG---DLAALLTN-------LEDRDVLFIDEIHRLSI 119
                + E  V  R       A      +L  +           + R VLFIDEIHR + 
Sbjct: 193 TATTSSNESNVGSRYFMIETSATKANTQELRGIFEKSKKEYQLTKRRTVLFIDEIHRFNK 252

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           + +++L P +E+  + L+    E PS +     +SR  +             +  R    
Sbjct: 253 VQQDLLLPHVENGDIILIGATTENPSFQLNNALISRCLIFVLEKLNVNELCIVLSRGIAL 312

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
           +       + +  I         L ++      +   S G  R A  +L  +        
Sbjct: 313 LNK---CRKQVWNI------ENPLKLSRSILEYVVDLSVGDTRRALNMLEMIEVSTRERK 363

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
           A      I D   +       G +                G    +TISA     R   E
Sbjct: 364 ADEEELSIDDVRDIIKNNSSNGLNTY----------YDPKGDNHYDTISAFHKSIRGGDE 413

Query: 298 DLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
           +    Y+ +       P    R ++ IA + +G+  
Sbjct: 414 NASLYYLARMLQGGEDPLYVARRMIRIASEDIGLRD 449


>gi|114766058|ref|ZP_01445068.1| AAA ATPase [Pelagibaca bermudensis HTCC2601]
 gi|114541693|gb|EAU44733.1| AAA ATPase [Roseovarius sp. HTCC2601]
          Length = 434

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 70/325 (21%), Positives = 115/325 (35%), Gaps = 52/325 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + LRP TL++  GQ    +   +     KA   AL  ++  GPPG+GKTT+A+ V  
Sbjct: 15  PLAAALRPETLDDVIGQPAITAEGSILRRRIKA--GALGSLILYGPPGIGKTTIARAVGT 72

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMEDFQLD 135
            LG  FR           +L  +      R  ++F+DE+HR S    + L    E+   D
Sbjct: 73  MLGKEFRPLHA-TRDGVKELRKIADEARIRPLLIFVDEVHRFSATQADDLLSICEEGTAD 131

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
            +      P        +SR T++                           +ED++ +V+
Sbjct: 132 FVGATTGNPYHALPPALVSRSTILKLEPM---------------------SLEDMEQVVR 170

Query: 194 RGAKLTG-----LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           RG          + +T E    +A RS G  R A   L  +              EI +A
Sbjct: 171 RGIDHLHSTGLDVEMTPEQVRLVAGRSGGDARRALTTLESLA-----VGHPGGRIEITEA 225

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L                Y +    +   G    + +SA +   R +  D    ++ +  
Sbjct: 226 MLEEA-------------YASAAINHDRSGDQHYDVVSAFVKSMRGSDPDATLYWLARMI 272

Query: 309 FIQRTPR--GRLLMPIAWQHLGIDI 331
                PR   R +M  A + +G+  
Sbjct: 273 HAGEDPRYIARRIMIHASEDVGLAD 297


>gi|213648825|ref|ZP_03378878.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
          Length = 414

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 71/307 (23%), Positives = 102/307 (33%), Gaps = 43/307 (14%)

Query: 36  ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG-----PVI 90
           A   L   IEA       L  ++  GPPG GKTTLA+V+AR    +    S        I
Sbjct: 4   AGKPLPRAIEAG-----HLHSMILWGPPGTGKTTLAEVIARYASADVERISAVTSGVKEI 58

Query: 91  AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVK 148
            +A + A    N   R +LF+DE+HR +   ++   P +ED  +  +    E PS     
Sbjct: 59  REAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNS 118

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAA 208
             LSR  +    +        + D                     RG     + + DE  
Sbjct: 119 ALLSRARVYLLKSLTTDDIEQVLD--------------QAMQDKTRGYGDQDIVLPDETR 164

Query: 209 CEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYL 268
             IA    G  R A   L  + D AE   +          ALL     +           
Sbjct: 165 RAIAELVNGDARRALNTLEMMADMAEADDSGKRVL---LPALLTEIAGERS--------- 212

Query: 269 TMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQH 326
              AR    G    + ISA     R +  D    +  +       P    R  + IA + 
Sbjct: 213 ---ARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASED 269

Query: 327 LGIDIPH 333
           +G   P 
Sbjct: 270 VGNADPR 276


>gi|241894974|ref|ZP_04782270.1| crossover junction endodeoxyribonuclease [Weissella
           paramesenteroides ATCC 33313]
 gi|241871692|gb|EER75443.1| crossover junction endodeoxyribonuclease [Weissella
           paramesenteroides ATCC 33313]
          Length = 429

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 70/323 (21%), Positives = 119/323 (36%), Gaps = 41/323 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RPR + E  GQ     + K+      A+   L  ++  GPPG GKT++A  +A 
Sbjct: 4   PLAYRMRPRNISEVVGQQHLVGDGKIINRMVTAK--MLSSMILYGPPGTGKTSIASAIAG 61

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR  +     K    + A    +    VL +DEIHRL    ++ L P +E  ++ 
Sbjct: 62  STKYAFRILNAATDTKKDLQIVAEEAKMSGTVVLLLDEIHRLDKTKQDFLLPHLESGRIV 121

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           L+    E P    +    SR       T++  +    +    + I     + E       
Sbjct: 122 LIGATTENPYLTILPAIRSR-------TQIFEVKPLSEADMQMAIARALADKE------- 167

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT--ITREIADAALL 251
           RG     + +  EA  ++   + G  R A   L         +      IT  I +  + 
Sbjct: 168 RGLGDFDVDLDQEAQQQLIYATNGDLRSALNGLELAVRSTNPSEDGRIHITLPIIEETVQ 227

Query: 252 RLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           R AI  DK G    ++  ++ + ++  G  V      A L              +I+ G 
Sbjct: 228 RKAITADKDGDGHYNV--ISALQKSIRGSDVD-----AAL---------HYLSRLIEAGD 271

Query: 310 IQRTPRGRLLMPIAWQHLGIDIP 332
           +      R L  IA++ +G+  P
Sbjct: 272 LPII--ARRLQVIAYEDVGVANP 292


>gi|291543201|emb|CBL16310.1| Recombination protein MgsA [Ruminococcus sp. 18P13]
          Length = 420

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 65/333 (19%), Positives = 120/333 (36%), Gaps = 58/333 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP TL+E  GQ    +  K      +     + +++F GP G+GKTTLA+++A 
Sbjct: 3   PLADKIRPTTLDEIVGQPHLLAPGKPLRRILERGQ--VTNMIFYGPSGVGKTTLARIIAS 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE-----DRDVLFIDEIHRLSIIVEEILYPAMED 131
              +     +G   A  GD+  ++         +  +L++DEI  L+   ++ L   +E+
Sbjct: 61  NSNMTLYKLNG-TSASVGDIKEIIAQTGTLAGCNGILLYLDEIQYLNKKQQQSLLEYIEN 119

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             L L+    E P        +SR T                              ++L+
Sbjct: 120 GSLTLIASTTENPYFAVFNAIISRST---------------------VFEFKPVTAKELE 158

Query: 190 TIVQRGAKLTGLAVTDEAACEI------AMRSRGTPRIAGRLLRRVRDFAEVA-HAKTIT 242
             V+R  +L G  +  +   E       A    G  R A   +      +E       +T
Sbjct: 159 PAVERAFRLMGQELGADCQPEDGVVSYIASGCGGDVRKAVNTVELSVLASETRDGVMPVT 218

Query: 243 REIADAALLR--LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
            E       R  +  D+ G    D   L+ + ++  G            S+   A+    
Sbjct: 219 LETVQQLTQRSNMRYDRDGDQHYD--LLSALQKSIRG------------SDENAALHYTA 264

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
              +++ G +    R R+L+  A + +G+  P 
Sbjct: 265 R--LLEVGDLLSLVR-RILVIAA-EDVGLAYPQ 293


>gi|170763967|ref|ZP_02636474.2| ATPase, AAA family [Clostridium perfringens B str. ATCC 3626]
 gi|170711102|gb|EDT23284.1| ATPase, AAA family [Clostridium perfringens B str. ATCC 3626]
          Length = 418

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 61/329 (18%), Positives = 119/329 (36%), Gaps = 54/329 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
               ++RP+ LE+  GQ           +  K +   + + +F GPPG+GKTTLA +++ 
Sbjct: 6   PLADIMRPKKLEDIVGQKHIVGEGTPLNKLIKNKN--IMNCIFYGPPGVGKTTLANIISN 63

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE-----DRDVLFIDEIHRLSIIVEEILYPAMED 131
                F   +    +   ++ ++ ++++        +L+IDE+   +   ++ L   +ED
Sbjct: 64  YTDKKFYKINA-TTSSIKEIQSITSDIDNLLNFKGIILYIDELQHFNKKQQQALLEFIED 122

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
            ++ L+    E P     K  LSR T                       +      ED+ 
Sbjct: 123 GRVILIASTTENPYFAIHKAILSRST---------------------IFQFKPVSTEDII 161

Query: 190 TIVQRGAKLTGLAVTDEAACEIA-----MRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
             ++R            +  E         S+G  R A  +L       E  +       
Sbjct: 162 IALERAVSKLEKEGYVISLEEGVLKYIGEISQGDVRKAYTVLELAIKSQEKDNILLNKEY 221

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +       L  D  G D  +   L+ + ++  G            S+P  +I  L    +
Sbjct: 222 VEKLGQSNLKSDSSGDDYYN--LLSALQKSIRG------------SDPDASIHYLAR--L 265

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           I+ G +    R R+ +  A + +G+  P+
Sbjct: 266 IKGGNMDSVIR-RIGVIAA-EDIGLAHPN 292


>gi|50547977|ref|XP_501458.1| YALI0C05038p [Yarrowia lipolytica]
 gi|49647325|emb|CAG81759.1| YALI0C05038p [Yarrowia lipolytica]
          Length = 626

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 79/396 (19%), Positives = 132/396 (33%), Gaps = 99/396 (25%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           ++  ++      L RP+TL++ +GQ E  + L+ F+   +     +  ++F GPPG+GKT
Sbjct: 116 TKEPARHTPLPELCRPQTLDDISGQKELMAVLRRFVAYGR-----IPSIIFWGPPGVGKT 170

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTN-------LEDRDVLFIDEIHRLSIIV 121
           TLA+++A+  G  F   S        D+  ++         L+   +LFIDE+HR S   
Sbjct: 171 TLARILAKTSGNRFVELSA-TQNNVADVKKVIDQANNEWKLLKRGTILFIDELHRFSKAQ 229

Query: 122 EEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +++L PA+E   + L+    E PS R V    SR  ++                      
Sbjct: 230 QDVLLPAVEKGDITLIGATTENPSFRLVGALTSRCRVLTLKK------------------ 271

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTD------EAACEIAMRSRGTPRIAGRLLRRVR--- 230
                ++D+K +V+R                 E    IA  + G  R A  +L  V    
Sbjct: 272 ---LSMKDIKEVVERSLVKYNDTAEHEVILPTEVIDYIAGIADGDVRSALNILELVVSVC 328

Query: 231 DFAEVAHAKTITREIADAALLRLAIDKMGFDQLD-------------------------- 264
           D  E    K +  E  +             D  D                          
Sbjct: 329 DIVEEQPEKAVEEEKPEETKDTTTEACAANDTTDATNEATPDDSAILSDSEAAENPASSS 388

Query: 265 ----------------------LRYLTMIARNF----GGGPVGIETISAGLSEPRDAIED 298
                                      +I R        G    + ISA     R +  D
Sbjct: 389 QDASSQLTVTASPPKRYRTTTLREIKNVIRRTHVLYDKNGDNHYDAISAFHKSIRGSDPD 448

Query: 299 LIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
               Y+ +       P    R ++ IA + +G+   
Sbjct: 449 ATLFYLGKMLKSGEDPLYIARRMVRIASEDIGLADD 484


>gi|67484070|ref|XP_657255.1| AAA family ATPase [Entamoeba histolytica HM-1:IMSS]
 gi|56474503|gb|EAL51869.1| AAA family ATPase, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 611

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 56/235 (23%), Positives = 92/235 (39%), Gaps = 28/235 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+ LE+  GQ +  +    F    K   + +   +  GPPG GKTT+A ++       F
Sbjct: 50  RPKNLEDIIGQEDILAIGTPFNTMIK--NDKIQSTILYGPPGCGKTTIAGIIKNNSKSTF 107

Query: 83  RSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
            S S    +K  D   ++ + + R       +LF+DEIH L+ + ++   PA+E   + L
Sbjct: 108 ISMSAA-SSKKEDFKKVINDAKHRKRMGINTILFLDEIHSLNRLQQDTFLPAIESGTIIL 166

Query: 137 M--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           +    E PS       +SR  L+            L D   + I     + E   +    
Sbjct: 167 IGATTENPSFELNNALMSRCQLVTL--------KKLTDEDVVKIMRKAIDEEYCNS---- 214

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
                 + + +E    IA  S G  R A   L +V     +   K +  EI +  
Sbjct: 215 -----KIDIDNEGLHFIAAISDGDARSALNTLEKVFVHFNLMSEKVLKNEINEKG 264


>gi|291166167|gb|EFE28213.1| ATPase, AAA family [Filifactor alocis ATCC 35896]
          Length = 420

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 65/324 (20%), Positives = 133/324 (41%), Gaps = 46/324 (14%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
             ++RP ++E+  GQ       K+     + +   + +++F GPPG GKTT+A+++A+  
Sbjct: 6   AEIVRPHSIEQVVGQSHIIGKNKLINRLIEQKQ--MINLIFYGPPGTGKTTVAEILAKNS 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE-----DRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
            +++   +    +K  D+  +  N+      +  +++IDEI   +   +++L   +E  Q
Sbjct: 64  DLSYYKLNA-TYSKTQDIRDIAENINTFSGINGILIYIDEIQNFNKKQQQLLLEYIEKGQ 122

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + L+    E P  +  K  LSR T+I   +          D   I   + ++ +E+L+  
Sbjct: 123 IILIASTTENPYHQIYKSLLSRCTVIEFFSL---------DDRAIREGI-YHALENLQN- 171

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD--AA 249
                    +   D     + + S G  R     L  +       +  +IT+E+ +  A 
Sbjct: 172 -----NGYTIQYEDSVLNMLVVFSSGDLRKGLNTLGTMVQLYSENNELSITKELIETVAT 226

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
              L  DK   +  D   L+ + ++  G  V              A+  L    +++ G 
Sbjct: 227 SKALLYDKNSDEHYD--LLSALQKSIRGSDV------------NAALHYLAR--LLESGD 270

Query: 310 IQRTPRGRLLMPIAWQHLGIDIPH 333
           I      R L+ +A + +G+  P 
Sbjct: 271 I--ISPSRRLLVMASEDIGMAYPQ 292


>gi|254569586|ref|XP_002491903.1| Protein with DNA-dependent ATPase and ssDNA annealing activities
           involved in maintenance of genome [Pichia pastoris
           GS115]
 gi|238031700|emb|CAY69623.1| Protein with DNA-dependent ATPase and ssDNA annealing activities
           involved in maintenance of genome [Pichia pastoris
           GS115]
          Length = 525

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 62/337 (18%), Positives = 106/337 (31%), Gaps = 62/337 (18%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +S +      LRP+TLEE+ GQ        V   +                   GKT+LA
Sbjct: 106 MSAKLPLAERLRPKTLEEYVGQSHLVGPTGVLRGSN------------------GKTSLA 147

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEI 124
           +++A          S    +   +   +           + R VLF DEIHR +   ++ 
Sbjct: 148 RIIAASTHNRCVELSA-TSSGISECRKVFEEARNEMRLTKRRTVLFCDEIHRFNKSQQDA 206

Query: 125 LYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             P +E   + L+    E PS +     LSR                          LN 
Sbjct: 207 FLPYVERGDIILIGATTENPSFQLNSALLSRCR---------------------VFVLNK 245

Query: 183 YEIEDLKTIVQRGA----KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
            + EDL  +V R      ++  L              +    +AG   R   +  E+  +
Sbjct: 246 LDNEDLAKVVNRSLLLVNRVRKLVYNMPVLRLTTESLQYIIGVAGGDSRTALNLVEMVDS 305

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGG-GPVGIETISAGLSEPRDAIE 297
                +   AA + +    +         L      +   G    + ISA     R +  
Sbjct: 306 HYQKNDDTTAASVEVDPSTL------REVLRSTHAVYDRVGDQHYDAISAFHKSVRGSNV 359

Query: 298 DLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
           D    Y+ +       P    R ++ +A + +G+   
Sbjct: 360 DATLYYLARMLHGGEDPLYISRRMIRMASEDIGVVDD 396


>gi|170764155|ref|ZP_02633248.2| ATPase, AAA family [Clostridium perfringens E str. JGS1987]
 gi|170661394|gb|EDT14077.1| ATPase, AAA family [Clostridium perfringens E str. JGS1987]
          Length = 418

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 61/329 (18%), Positives = 119/329 (36%), Gaps = 54/329 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
               ++RP+ LE+  GQ           +  K +   + + +F GPPG+GKTTLA +++ 
Sbjct: 6   PLADIMRPKKLEDIVGQKHIVGEGTPLNKLIKNKN--IINCIFYGPPGVGKTTLANIISN 63

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE-----DRDVLFIDEIHRLSIIVEEILYPAMED 131
                F   +    +   ++ ++ ++++        +L+IDE+   +   ++ L   +ED
Sbjct: 64  YTDKKFYKINA-TTSSIKEIQSITSDIDNLLNFKGIILYIDELQHFNKKQQQALLEFIED 122

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
            ++ L+    E P     K  LSR T                       +      ED+ 
Sbjct: 123 GRVILIASTTENPYFAIHKAILSRST---------------------IFQFKPVSTEDII 161

Query: 190 TIVQRGAKLTGLAVTDEAACEIA-----MRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
             ++R            +  E         S+G  R A  +L       E  +       
Sbjct: 162 IALERAVSKLEKEGYVISLEEGVLKYIGDISQGDVRKAYTVLELAIKSQEKDNILLNKEY 221

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +       L  D  G D  +   L+ + ++  G            S+P  +I  L    +
Sbjct: 222 VEKLGQSNLKSDSSGDDYYN--LLSALQKSIRG------------SDPDASIHYLAR--L 265

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           I+ G +    R R+ +  A + +G+  P+
Sbjct: 266 IKGGNMDSVIR-RIGVIAA-EDIGLAHPN 292


>gi|296473933|gb|DAA16048.1| Werner helicase interacting protein 1 [Bos taurus]
          Length = 494

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 62/316 (19%), Positives = 115/316 (36%), Gaps = 35/316 (11%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLG 66
           R + +       +RP  L++F GQ  A      L+  +EA++     +  ++  GPPG G
Sbjct: 192 RQLLEGKPLADTMRPDALQDFVGQGRAVGPETLLRSLLEASE-----VPSLILWGPPGCG 246

Query: 67  KTTLAQVVARELGVNFRST--SGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRL 117
           KTTLA ++A     +           AK  D+  ++   +        + +LFIDEIHR 
Sbjct: 247 KTTLAHIIANNSKKHSIRFVTLSATSAKTTDVRDVIKQAQNEKRFFKRKTILFIDEIHRF 306

Query: 118 SIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
           +   ++   P +E   + L+    E PS +     LSR  +I            +  R  
Sbjct: 307 NKSQQDTFLPHVECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAVVTILMRAV 366

Query: 176 IPIRLNFYEIEDLKTIVQ---RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
             + +   +       +      +  + + + D+A   +A  S G  R     L+     
Sbjct: 367 NSLGIQVLDSSRPADPLSHGGNSSSESSVLIEDKAVDTLAHLSDGDARAGLNGLQLAV-L 425

Query: 233 AEVAHAKTITRE-----IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISA 287
           A ++  KT  ++          L+  +  K G  +  + Y      ++         ISA
Sbjct: 426 ARLSARKTFGKKGGQSYPPSRVLVTESDVKEGLQRSHILYDRAGEEHYNC-------ISA 478

Query: 288 GLSEPRDAIEDLIEPY 303
                R +       +
Sbjct: 479 LHKSMRGSDSSAALYW 494


>gi|32267139|ref|NP_861171.1| recombination factor protein RarA [Helicobacter hepaticus ATCC
           51449]
 gi|32263192|gb|AAP78237.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
          Length = 411

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 70/325 (21%), Positives = 116/325 (35%), Gaps = 49/325 (15%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
             LLRP +L++F GQ    +      +    +   + H  F GPPG GKTTLA+++A+EL
Sbjct: 5   AHLLRPTSLQDFIGQEHIIAPHTPLFKM--LQHHTIAHCFFYGPPGSGKTTLAKLIAKEL 62

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR---DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
              F + +     K  +L   + N E      ++FIDE+HRL+ + +E+L P ME     
Sbjct: 63  NKPFANFNATTF-KIEELRKFIKNYEGGLYQPLIFIDEVHRLNTLQQEVLLPIMESHT-A 120

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           ++ G                          LTN ++ R  I   L       L+ I+Q  
Sbjct: 121 IIFGASTYNPFHS-----------------LTNAIRSRSFI-FELKPLSPIHLEQILQYA 162

Query: 196 A------KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
                  K   + +  +A   I   S G  R    LL    D   +   + +    A  +
Sbjct: 163 LTYLHNQKHLKVKLAPQAQEFIISSSAGDARAMLNLLDAACD--TLNEKECLITYQALQS 220

Query: 250 LL-RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           L      D     Q     ++ + ++  G                    + I        
Sbjct: 221 LRPYTLHDGSSEAQTHYSLISAMIKSIRGSDANASIYYLARLIAGGENPEFI-------- 272

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIPH 333
                   R L+ +A + +G   P+
Sbjct: 273 -------ARRLVILASEDIGNANPN 290


>gi|18310769|ref|NP_562703.1| recombination factor protein RarA [Clostridium perfringens str. 13]
 gi|18145450|dbj|BAB81493.1| conserved hypothetical protein [Clostridium perfringens str. 13]
          Length = 408

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 61/324 (18%), Positives = 118/324 (36%), Gaps = 54/324 (16%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ LE+  GQ           +  K +   + + +F GPPG+GKTTLA +++      
Sbjct: 1   MRPKKLEDIVGQKHIVGEGTPLNKLIKNKN--IINCIFYGPPGVGKTTLANIISNYTDKK 58

Query: 82  FRSTSGPVIAKAGDLAALLTNLE-----DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           F   +    +   ++ ++ ++++        +L+IDE+   +   ++ L   +ED ++ L
Sbjct: 59  FYKINA-TTSSIKEIQSITSDIDNLLNFKGIILYIDELQHFNKKQQQALLEFIEDGRVIL 117

Query: 137 M--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           +    E P     K  LSR T                       +      ED+   ++R
Sbjct: 118 IASTTENPYFAIHKAILSRST---------------------IFQFKPVSTEDIIIALER 156

Query: 195 GAKLTGLAVTDEAACEIA-----MRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
                       +  E         S+G  R A  +L       E  +       +    
Sbjct: 157 AVSKLEKEGYVISLEEGVLKYIGDISQGDVRKAYTVLELAIKSQEKDNILLNKEYVEKLG 216

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
              L  D  G D  +   L+ + ++  G            S+P  +I  L    +I+ G 
Sbjct: 217 QSNLKSDSSGDDYYN--LLSALQKSIRG------------SDPDASIHYLAR--LIKGGN 260

Query: 310 IQRTPRGRLLMPIAWQHLGIDIPH 333
           +    R R+ +  A + +G+  P+
Sbjct: 261 MDSVIR-RIGVIAA-EDIGLAHPN 282


>gi|600046|emb|CAA55489.1| N1302 [Saccharomyces cerevisiae]
 gi|2253183|emb|CAA96120.1| unnamed protein product [Saccharomyces cerevisiae]
          Length = 472

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 65/336 (19%), Positives = 114/336 (33%), Gaps = 41/336 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV-- 74
                LRP+ L ++ GQ    S     +     +   +  ++  GPPG+GKT+LA+++  
Sbjct: 19  PLSEKLRPKELRDYVGQQHILSQDNGTLFKYIKQG-TIPSMILWGPPGVGKTSLARLLTK 77

Query: 75  -----ARELGVNFRSTSGPVIAKAG---DLAALLTN-------LEDRDVLFIDEIHRLSI 119
                + E  V  R       A      +L  +           + R VLFIDEIHR + 
Sbjct: 78  TATTSSNESNVGSRYFMIETSATKANTQELRGIFEKSKKEYQLTKRRTVLFIDEIHRFNK 137

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           + +++L P +E+  + L+    E PS +     +SR  +             +  R    
Sbjct: 138 VQQDLLLPHVENGDIILIGATTENPSFQLNNALISRCLIFVLEKLNVNELCIVLSRGIAL 197

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
           +       + +  I         L ++      +   S G  R A  +L  +        
Sbjct: 198 LNK---CRKQVWNI------ENPLKLSRSILEYVVDLSVGDTRRALNMLEMIEVSTRERK 248

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
           A      I D   +       G +                G    +TISA     R   E
Sbjct: 249 ADEEELSIDDVRDIIKNNSSNGLNTY----------YDPKGDNHYDTISAFHKSIRGGDE 298

Query: 298 DLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
           +    Y+ +       P    R ++ IA + +G+  
Sbjct: 299 NASLYYLARMLQGGEDPLYVARRMIRIASEDIGLRD 334


>gi|254556440|ref|YP_003062857.1| recombination factor protein RarA [Lactobacillus plantarum JDM1]
 gi|254045367|gb|ACT62160.1| recombination factor protein RarA [Lactobacillus plantarum JDM1]
          Length = 420

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 67/316 (21%), Positives = 117/316 (37%), Gaps = 43/316 (13%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP++LE+  GQ +     +   +           ++  GPPG GKT+LAQ++A +    
Sbjct: 11  MRPQSLEQMVGQQDLLKAGQPLRQIIDQHVNIP--LILWGPPGTGKTSLAQIIASQDDYP 68

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VG 139
           F + +     KA    A+    E   VL IDEIHR++  +++ L P +E+  + L+    
Sbjct: 69  FVAFNASTENKAQLTKAIAQYPEQSFVLLIDEIHRMTKTLQDFLLPYLENGHVMLIGSTT 128

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199
           E P    V    SR  +            PL D               L+  V     LT
Sbjct: 129 ENPIMSIVPAIRSRCQIFEF--------QPLSDTDIEIA---------LRRAVTDIYNLT 171

Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL-AIDKM 258
              V  +A   IA+ + G  RIA  +L  +     +   +     +   A  +  + D+ 
Sbjct: 172 DDQVDAKALNLIAISAEGDLRIALNILETLH---AIDQKQITVAAVQHFAQQQHFSYDRK 228

Query: 259 GFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRL 318
                D  YL+  + +  G           +    D +  ++                R 
Sbjct: 229 ATKHYD--YLSAYSDSMAGSDTDAALYYLTILLKNDDLPSVV----------------RR 270

Query: 319 LMPIAWQHLGIDIPHR 334
           L  I + ++G+  P +
Sbjct: 271 LREIPYTYIGLANPEQ 286


>gi|309804815|ref|ZP_07698879.1| ATPase, AAA family [Lactobacillus iners LactinV 09V1-c]
 gi|309809896|ref|ZP_07703744.1| ATPase, AAA family [Lactobacillus iners SPIN 2503V10-D]
 gi|312871594|ref|ZP_07731686.1| ATPase, AAA family [Lactobacillus iners LEAF 3008A-a]
 gi|312873237|ref|ZP_07733293.1| ATPase, AAA family [Lactobacillus iners LEAF 2052A-d]
 gi|312874638|ref|ZP_07734662.1| ATPase, AAA family [Lactobacillus iners LEAF 2053A-b]
 gi|325913012|ref|ZP_08175385.1| ATPase, AAA family [Lactobacillus iners UPII 60-B]
 gi|329921095|ref|ZP_08277618.1| ATPase, AAA family [Lactobacillus iners SPIN 1401G]
 gi|308165925|gb|EFO68144.1| ATPase, AAA family [Lactobacillus iners LactinV 09V1-c]
 gi|308169684|gb|EFO71729.1| ATPase, AAA family [Lactobacillus iners SPIN 2503V10-D]
 gi|311089868|gb|EFQ48288.1| ATPase, AAA family [Lactobacillus iners LEAF 2053A-b]
 gi|311091248|gb|EFQ49636.1| ATPase, AAA family [Lactobacillus iners LEAF 2052A-d]
 gi|311092819|gb|EFQ51171.1| ATPase, AAA family [Lactobacillus iners LEAF 3008A-a]
 gi|325477692|gb|EGC80831.1| ATPase, AAA family [Lactobacillus iners UPII 60-B]
 gi|328935002|gb|EGG31491.1| ATPase, AAA family [Lactobacillus iners SPIN 1401G]
          Length = 445

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 60/331 (18%), Positives = 107/331 (32%), Gaps = 37/331 (11%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
            +V +       +RP +L +  GQ       K+     +A+   L  ++  G PG+GKT+
Sbjct: 6   EDVQKMQPLAYRMRPHSLTDVVGQQHLIGPGKIITRMVEAK--LLSSMILYGQPGIGKTS 63

Query: 70  LAQVVARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           +A  +A      FR  +    +K    + A    +    +L +DEI RL    ++ L P 
Sbjct: 64  IATAIAGATKYAFRKLNAATDSKKDLQIVAEEGKMSGTVILLLDEIQRLDKSKQDFLLPL 123

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           +E  Q+ L+    E P         SR  +            PLQ             I+
Sbjct: 124 LESGQIILIGATTENPYIAISPAIRSRCQIFEL--------KPLQSEDISKA------ID 169

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR-----DFAEVAHAKTI 241
                   G     + +T EA   +  +  G  R     L         +  +       
Sbjct: 170 HALLDPINGLGKENVTLTPEARNILIQKGNGDLRSTLNALELAVLSTKQELMQTNQYHNK 229

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
                   L  +      FD     +  ++   F     G +T +A              
Sbjct: 230 LTISESEMLNSVQFKSYNFDSNGDSHYNLL-SAFQKSIRGSDTDAAL----------FYL 278

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
             +   G ++     R L+  A++ +G+  P
Sbjct: 279 AELCLAGDLKSIC--RRLLVTAYEDIGLANP 307


>gi|152993934|ref|YP_001359655.1| recombination factor protein RarA [Sulfurovum sp. NBC37-1]
 gi|151425795|dbj|BAF73298.1| ATPase, AAA family [Sulfurovum sp. NBC37-1]
          Length = 393

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 76/318 (23%), Positives = 120/318 (37%), Gaps = 55/318 (17%)

Query: 23  RPRTLEEFTGQVEACS---NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           RP+TL+E  GQ         L+  IEA     +AL H+   GPPG GKTTLA+++A +LG
Sbjct: 9   RPKTLDEMVGQRHLLGEEAPLRKLIEA-----DALPHIFLYGPPGCGKTTLARIIATQLG 63

Query: 80  VNFRSTSGPVIAKAGDLAALLT---NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
             F   +   + K  DL  +     N   + ++FIDE+HRLS   +E+L P ME+    L
Sbjct: 64  RPFYEMNATTL-KIDDLRKIFKEYANALQKPLIFIDEVHRLSKNQQEVLLPFMEN-NAAL 121

Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA 196
           ++G                          LT  ++ R  +       + E    + +  A
Sbjct: 122 VIGASTENPY-----------------YSLTAAMRSRSHLFELEALKQKEMQDYLAKIIA 164

Query: 197 KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAID 256
            L  + V ++A   +   S G  R    LL   +  A     +T+ +    A     A  
Sbjct: 165 -LQAMDVEEDAVEYLVFSSGGDVRAMLNLLESAQMVATPVTLETLKQIRPHA---MQAGS 220

Query: 257 KMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ--QGFIQRTP 314
                  +L                    SA +   R +  D    Y+ +  +G      
Sbjct: 221 SESESHYEL-------------------TSAMIKSIRGSDIDAALYYLARLIEGGEPAEF 261

Query: 315 RGRLLMPIAWQHLGIDIP 332
             R L  +A + +G   P
Sbjct: 262 IARRLAILASEDIGNANP 279


>gi|85110657|ref|XP_963567.1| hypothetical protein NCU08706 [Neurospora crassa OR74A]
 gi|9453819|emb|CAB99387.1| conserved hypothetical protein [Neurospora crassa]
 gi|28925252|gb|EAA34331.1| hypothetical protein NCU08706 [Neurospora crassa OR74A]
          Length = 622

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 69/339 (20%), Positives = 112/339 (33%), Gaps = 66/339 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP +L++  GQ        V    A    + +  ++  G  G GKTT+A+ +A+
Sbjct: 179 PLAERMRPGSLDDVFGQD-LVGPNGVLR--ALIETDRVPSMILWGGSGTGKTTIARCIAQ 235

Query: 77  ELGVNFRSTSGPVIAKA------GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
             G  F   +      A      G+ A  L     R ++F DEIHR +   ++I    +E
Sbjct: 236 RTGSRFIELNATSSGVAECKKYFGEAANELHLTGRRTIIFCDEIHRFTKAQQDIFLKPVE 295

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
              + L+    E PS + V   LSR                                +DL
Sbjct: 296 AGTITLIGATTENPSFKVVPALLSRCRTFTL---------------------QPLSRDDL 334

Query: 189 KTIVQRGAKL--------TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH--- 237
           + I+ R  K             + DE    +   + G  R A  LL              
Sbjct: 335 QRILLRALKQEITDQHLPLSPLIDDELLSYLCAFADGDARTALNLLELALSLTTTTTTTT 394

Query: 238 ---AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRD 294
               + +T+E   A+L +  +     DQ                    +TISA     R 
Sbjct: 395 SSPDEPLTKESIKASLTKTLVYDRASDQH------------------YDTISAFHKSIRG 436

Query: 295 AIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
           +  D    Y+ +       P    R L+ IA + +G+  
Sbjct: 437 SDPDASLYYLARMLQSGEDPLFIARRLVVIASEDVGLAD 475


>gi|300767164|ref|ZP_07077076.1| crossover junction endodeoxyribonuclease [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|300494983|gb|EFK30139.1| crossover junction endodeoxyribonuclease [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
          Length = 422

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 67/316 (21%), Positives = 117/316 (37%), Gaps = 43/316 (13%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP++LE+  GQ +     +   +           ++  GPPG GKT+LAQ++A +    
Sbjct: 13  MRPQSLEQMVGQQDLLKAGQPLRQIIDQHVNIP--LILWGPPGTGKTSLAQIIASQDDYP 70

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VG 139
           F + +     KA    A+    E   VL IDEIHR++  +++ L P +E+  + L+    
Sbjct: 71  FVAFTASTENKAQLTKAIAQYPEQSFVLLIDEIHRMTKTLQDFLLPYLENGHVMLIGSTT 130

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199
           E P    V    SR  +            PL D               L+  V     LT
Sbjct: 131 ENPIMSIVPAIRSRCQIFEF--------QPLSDTDIEIA---------LRRAVTDIYNLT 173

Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL-AIDKM 258
              V  +A   IA+ + G  RIA  +L  +     +   +     +   A  +  + D+ 
Sbjct: 174 DDQVDAKALNLIAISAEGDLRIALNILETLH---AIDQKQITVAAVQHFAQQQHFSYDRK 230

Query: 259 GFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRL 318
                D  YL+  + +  G           +    D +  ++                R 
Sbjct: 231 ATKHYD--YLSAYSDSMAGSDTDAALYYLTILLKNDDLPSVV----------------RR 272

Query: 319 LMPIAWQHLGIDIPHR 334
           L  I + ++G+  P +
Sbjct: 273 LREIPYTYIGLANPEQ 288


>gi|308180384|ref|YP_003924512.1| crossover junction endodeoxyribonuclease [Lactobacillus plantarum
           subsp. plantarum ST-III]
 gi|308045875|gb|ADN98418.1| crossover junction endodeoxyribonuclease [Lactobacillus plantarum
           subsp. plantarum ST-III]
          Length = 420

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 67/316 (21%), Positives = 117/316 (37%), Gaps = 43/316 (13%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP++LE+  GQ +     +   +           ++  GPPG GKT+LAQ++A +    
Sbjct: 11  MRPQSLEQMVGQQDLLKAGQPLRQIIDQHVNIP--LILWGPPGTGKTSLAQIIASQDDYP 68

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VG 139
           F + +     KA    A+    E   VL IDEIHR++  +++ L P +E+  + L+    
Sbjct: 69  FVAFTASTENKAQLTKAIAQYPEQSFVLLIDEIHRMTKTLQDFLLPYLENGHVMLIGSTT 128

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199
           E P    V    SR  +            PL D               L+  V     LT
Sbjct: 129 ENPIMSIVPAIRSRCQIFEF--------QPLSDTDIEIA---------LRRAVTDIYNLT 171

Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL-AIDKM 258
              V  +A   IA+ + G  RIA  +L  +     +   +     +   A  +  + D+ 
Sbjct: 172 DDQVDAKALNLIAISAEGDLRIALNILETLH---AIDQKQITVAAVQHFAQQQHFSYDRK 228

Query: 259 GFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRL 318
                D  YL+  + +  G           +    D +  ++                R 
Sbjct: 229 ATKHYD--YLSAYSDSMAGSDTDAALYYLTILLKNDDLPSVV----------------RR 270

Query: 319 LMPIAWQHLGIDIPHR 334
           L  I + ++G+  P +
Sbjct: 271 LREIPYTYIGLANPEQ 286


>gi|305432754|ref|ZP_07401913.1| ATPase [Campylobacter coli JV20]
 gi|304444151|gb|EFM36805.1| ATPase [Campylobacter coli JV20]
          Length = 393

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 75/288 (26%), Positives = 120/288 (41%), Gaps = 38/288 (13%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+TL+E  GQ E     K FI   K     L H LF GP G GKTT A+VVA++ G++F
Sbjct: 8   RPKTLDEILGQQELVEVFKKFISMQK-----LPHSLFFGPAGCGKTTFARVVAKDFGLDF 62

Query: 83  RSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
               G    K  DL  ++ N ++   + ++FIDEIHRLS   +E+L   ME+++  +++G
Sbjct: 63  YEFDGGNF-KLEDLRKIIENYKNSLYKPLIFIDEIHRLSKTQQEMLLIPMENYR-CIVIG 120

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199
                                    +L++ ++ R  +         +DL+ +++R  +  
Sbjct: 121 ASTENPYF-----------------VLSSGIRSRS-MLFEFKNLGQKDLELLLERVQQKI 162

Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259
              + D A   +        R    LL     FA V + K IT E      LR  ++  G
Sbjct: 163 AFKIEDNAKEFLLK--SFDARAMLNLLE----FALVLNEKEITLENLKK--LRNGVNSEG 214

Query: 260 FDQLDLRYL--TMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
               D  Y+  + + ++  G  V                 D I   +I
Sbjct: 215 VSSKDTHYILASALIKSLRGSDVDAAIYYLARLIDAGESADFIARRLI 262


>gi|268319502|ref|YP_003293158.1| recombination factor protein RarA [Lactobacillus johnsonii FI9785]
 gi|262397877|emb|CAX66891.1| recombination factor protein RarA [Lactobacillus johnsonii FI9785]
          Length = 420

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 70/326 (21%), Positives = 122/326 (37%), Gaps = 53/326 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
               L+RP+ L  F GQ +     +   +  K        +L  GPPG GKT+LAQ++AR
Sbjct: 6   PLADLIRPKDLSHFVGQKDLIKEGQPLYQIIKNHVPI--SLLLWGPPGTGKTSLAQIIAR 63

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           E      + +     KA  +  + T      VL IDEIHR++  +++ L P +E+ Q+ L
Sbjct: 64  EYDYPLATFNASTDNKAKLMQIINTYPYQSFVLLIDEIHRMTTTLQDYLLPYLENGQILL 123

Query: 137 M--VGEGPSARSVKINLSR-----FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           +    E P    V    SR     F  ++      +L   L++ F +  +      ++  
Sbjct: 124 IGATTENPIMSIVPAVRSRCQIFEFKALSDHDIEQVLIRALKEVFNLAEKQI---DKEAI 180

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD-A 248
            I+ R A                    G  R+A  LL  +     V   +   + + +  
Sbjct: 181 NIIARSA-------------------DGDLRVALNLLETIH---AVNGEEISVKNVKEFE 218

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
                A D+      D  YL   + +  G     +T +A                +++ G
Sbjct: 219 KGQHFAYDRKATKHYD--YLAAYSDSMAGS----DTDAAL----------YYLTVLLKNG 262

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIPHR 334
            +      R L  I + ++G+  P +
Sbjct: 263 DLPSVV--RRLREIPYTYVGLANPEQ 286


>gi|187932817|ref|YP_001885365.1| recombination factor protein RarA [Clostridium botulinum B str.
           Eklund 17B]
 gi|187720970|gb|ACD22191.1| ATPase, AAA family [Clostridium botulinum B str. Eklund 17B]
          Length = 428

 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 70/324 (21%), Positives = 124/324 (38%), Gaps = 44/324 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
               L+RP  +E+F GQ              K++   + + +F GPPG GKTTLA ++A+
Sbjct: 3   PLADLMRPSKIEDFVGQRHILGENTPLYNLIKSK--KICNCIFYGPPGTGKTTLANIMAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED-----RDVLFIDEIHRLSIIVEEILYPAMED 131
            +   F   +    A   D+  +   L++       VL+IDE+   +   ++ L   +ED
Sbjct: 61  YVDKKFYKLNA-TTASVKDIQNITNELDNLLNYAGVVLYIDELQHFNKKQQQSLLEFIED 119

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
            ++ L+    E P     K  +SR  + A          PL     I       +    +
Sbjct: 120 GRITLIASTTENPYFVIHKAIISRCNIFAF--------EPLIISDIIVGLEKSLDKLINE 171

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            I         +  ++EA   IA  S+G  R A  +L    +     H +     I    
Sbjct: 172 GI--------EVTYSNEALKYIAEISQGDYRKAYNILELSINSQMTLHKEISVDYIEKLG 223

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
              +  D  G +  +   L+ + ++  G            S+   AI  L    +I+ G 
Sbjct: 224 QSNMRADNSGDEFYN--LLSALQKSIRG------------SDSDAAIHYLAR--LIKGGN 267

Query: 310 IQRTPRGRLLMPIAWQHLGIDIPH 333
           I    R R+ + +A + +G+  P+
Sbjct: 268 IAAIIR-RISVIVA-EDIGLAHPN 289


>gi|259501667|ref|ZP_05744569.1| AAA family ATPase [Lactobacillus iners DSM 13335]
 gi|259166952|gb|EEW51447.1| AAA family ATPase [Lactobacillus iners DSM 13335]
          Length = 439

 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 59/324 (18%), Positives = 104/324 (32%), Gaps = 37/324 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP +L +  GQ       K+     +A+   L  ++  G PG+GKT++A  +A 
Sbjct: 7   PLAYRMRPHSLTDVVGQQHLIGPGKIITRMVEAK--LLSSMILYGQPGIGKTSIATAIAG 64

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR  +    +K    + A    +    +L +DEI RL    ++ L P +E  Q+ 
Sbjct: 65  ATKYAFRKLNAATDSKKDLQIVAEEGKMSGTVILLLDEIQRLDKSKQDFLLPLLESGQII 124

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           L+    E P         SR  +            PLQ             I+       
Sbjct: 125 LIGATTENPYIAISPAIRSRCQIFEL--------KPLQSEDISKA------IDHALLDPI 170

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR-----DFAEVAHAKTITREIADA 248
            G     + +T EA   +  +  G  R     L         +  +              
Sbjct: 171 NGLGKENVTLTPEARNILIQKGNGDLRSTLNALELAVLSTKQELMQTNQYHNKLTISESE 230

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  +      FD     +  ++   F     G +T +A                +   G
Sbjct: 231 MLNSVQFKSYNFDSNGDSHYNLL-SAFQKSIRGSDTDAAL----------FYLAELCLAG 279

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIP 332
            ++     R L+  A++ +G+  P
Sbjct: 280 DLKSIC--RRLLVTAYEDIGLANP 301


>gi|302191125|ref|ZP_07267379.1| recombination factor protein RarA [Lactobacillus iners AB-1]
 gi|309803241|ref|ZP_07697338.1| recombination factor protein RarA [Lactobacillus iners LactinV
           11V1-d]
 gi|309806317|ref|ZP_07700330.1| recombination factor protein RarA [Lactobacillus iners LactinV
           03V1-b]
 gi|309808533|ref|ZP_07702431.1| recombination factor protein RarA [Lactobacillus iners LactinV
           01V1-a]
 gi|312871951|ref|ZP_07732033.1| recombination factor protein RarA [Lactobacillus iners LEAF
           2062A-h1]
 gi|315653730|ref|ZP_07906650.1| AAA family ATPase [Lactobacillus iners ATCC 55195]
 gi|325911724|ref|ZP_08174131.1| recombination factor protein RarA [Lactobacillus iners UPII 143-D]
 gi|308164749|gb|EFO66999.1| recombination factor protein RarA [Lactobacillus iners LactinV
           11V1-d]
 gi|308167301|gb|EFO69467.1| recombination factor protein RarA [Lactobacillus iners LactinV
           03V1-b]
 gi|308168210|gb|EFO70330.1| recombination factor protein RarA [Lactobacillus iners LactinV
           01V1-a]
 gi|311092528|gb|EFQ50890.1| recombination factor protein RarA [Lactobacillus iners LEAF
           2062A-h1]
 gi|315489092|gb|EFU78734.1| AAA family ATPase [Lactobacillus iners ATCC 55195]
 gi|325476490|gb|EGC79649.1| recombination factor protein RarA [Lactobacillus iners UPII 143-D]
          Length = 435

 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 59/324 (18%), Positives = 104/324 (32%), Gaps = 37/324 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP +L +  GQ       K+     +A+   L  ++  G PG+GKT++A  +A 
Sbjct: 3   PLAYRMRPHSLTDVVGQQHLIGPGKIITRMVEAK--LLSSMILYGQPGIGKTSIATAIAG 60

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                FR  +    +K    + A    +    +L +DEI RL    ++ L P +E  Q+ 
Sbjct: 61  ATKYAFRKLNAATDSKKDLQIVAEEGKMSGTVILLLDEIQRLDKSKQDFLLPLLESGQII 120

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           L+    E P         SR  +            PLQ             I+       
Sbjct: 121 LIGATTENPYIAISPAIRSRCQIFEL--------KPLQSEDISKA------IDHALLDPI 166

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR-----DFAEVAHAKTITREIADA 248
            G     + +T EA   +  +  G  R     L         +  +              
Sbjct: 167 NGLGKENVTLTPEARNILIQKGNGDLRSTLNALELAVLSTKQELMQTNQYHNKLTISESE 226

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  +      FD     +  ++   F     G +T +A                +   G
Sbjct: 227 MLNSVQFKSYNFDSNGDSHYNLL-SAFQKSIRGSDTDAAL----------FYLAELCLAG 275

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIP 332
            ++     R L+  A++ +G+  P
Sbjct: 276 DLKSIC--RRLLVTAYEDIGLANP 297


>gi|269123583|ref|YP_003306160.1| AAA ATPase central domain-containing protein [Streptobacillus
           moniliformis DSM 12112]
 gi|268314909|gb|ACZ01283.1| AAA ATPase central domain protein [Streptobacillus moniliformis DSM
           12112]
          Length = 395

 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 64/324 (19%), Positives = 120/324 (37%), Gaps = 61/324 (18%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
            ++      RP+  +EF GQ      L   +E  K     +   +F GP G GKTTLA++
Sbjct: 7   DKEPLAYKYRPKDFDEFYGQENIRKILFRMLENNK-----IISSIFFGPSGTGKTTLAKI 61

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAME 130
           +A +LG ++   +  + A   D+  +    ++   + +LF DEIHR + + ++ L   +E
Sbjct: 62  IADKLGYDYVYLNA-IKASKNDITQISLKAKNSVNKTLLFFDEIHRFNKLQQDSLLEDLE 120

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +  + L+    E P     +  LSR                      +       + ED+
Sbjct: 121 NGNIILIGATTENPYFSLNRALLSRV---------------------LLFEFKKLDEEDI 159

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             I+++ AK   L   ++    I+M S G  R +   L  + +   +  +     E+ + 
Sbjct: 160 FNILEKIAKEEQLEYKEDILKYISMISDGDARTSINFLETLINADFLNSSIEEVTELFN- 218

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
                                   + F       + ISA +   R +  D    +M +  
Sbjct: 219 -----------------------IKVFADR---YDAISAMIKSIRGSDPDSAVYWMSKLL 252

Query: 309 FIQRTPR--GRLLMPIAWQHLGID 330
                P    R L+  A + +G+ 
Sbjct: 253 IGGEAPMYIARRLVISASEDIGLA 276


>gi|110803416|ref|YP_699072.1| recombination factor protein RarA [Clostridium perfringens SM101]
 gi|110683917|gb|ABG87287.1| ATPase, AAA family [Clostridium perfringens SM101]
          Length = 415

 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 61/329 (18%), Positives = 118/329 (35%), Gaps = 54/329 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
               ++RP+ LE+  GQ              K +   + + +F GPPG+GKTTLA +++ 
Sbjct: 3   PLADIMRPKKLEDIVGQKHIVGEGTPLSNLIKNKN--MINCIFYGPPGVGKTTLANIISN 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE-----DRDVLFIDEIHRLSIIVEEILYPAMED 131
                F   +    +   ++ ++ ++++        +L+IDE+   +   ++ L   +ED
Sbjct: 61  YTDKKFYKINA-TTSSIKEIQSITSDIDNLLNFKGIILYIDELQHFNKKQQQALLEFIED 119

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
            ++ L+    E P     K  LSR T                       +      ED+ 
Sbjct: 120 GRVILIASTTENPYFAIHKAILSRST---------------------IFQFKPVSTEDII 158

Query: 190 TIVQRGAKLTGLAVTDEAACEIA-----MRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
             ++R            +  E         S+G  R A  +L       E  +       
Sbjct: 159 IALERAVSKLEKEGYVISLEEGVLKYIGEISQGDVRKAYTILELAIKSQEKDNILLNKEY 218

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           +       L  D  G D  +   L+ + ++  G            S+P  +I  L    +
Sbjct: 219 VEKLGQSNLKSDSSGDDYYN--LLSALQKSIRG------------SDPDASIHYLAR--L 262

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           I+ G +    R R+ +  A + +G+  P+
Sbjct: 263 IKGGNMDSVIR-RIGVIAA-EDIGLAHPN 289


>gi|218460214|ref|ZP_03500305.1| recombination factor protein RarA [Rhizobium etli Kim 5]
          Length = 255

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 56/236 (23%), Positives = 96/236 (40%), Gaps = 32/236 (13%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           +   V+        LRP+TL + TGQ        V     +  + +L  ++F GPPG GK
Sbjct: 10  VPEEVAARRPLADRLRPKTLADVTGQDHLTGEDGVLKRMIE--SGSLGSMIFWGPPGTGK 67

Query: 68  TTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           TT+A++++ E G+ F   S        + K  + A +      + +LF+DEIHR +   +
Sbjct: 68  TTVARLLSGEAGLAFEQISAIFSGVADLKKVFEAARMRRMDGRQTLLFVDEIHRFNRAQQ 127

Query: 123 EILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +   P MED  + L+    E PS       LSR  ++   +                   
Sbjct: 128 DSFLPVMEDGTVILVGATTENPSFELNAALLSRARVLTFKS------------------- 168

Query: 181 NFYEIEDLKTIVQRGAKLT--GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
             ++ E L+ +++R   +    L + +EA   +   + G  R    L   V   A 
Sbjct: 169 --HDEESLEELLKRAEAIEQKPLPLVEEARASLIRMADGDGRAVLTLAEEVWRAAR 222


>gi|332653384|ref|ZP_08419129.1| ATPase, AAA family [Ruminococcaceae bacterium D16]
 gi|332518530|gb|EGJ48133.1| ATPase, AAA family [Ruminococcaceae bacterium D16]
          Length = 421

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 61/323 (18%), Positives = 109/323 (33%), Gaps = 48/323 (14%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP TL+E  GQ        +     +     + +++F GP G GKTT+A ++A+     
Sbjct: 10  IRPTTLDEVVGQKHILGKDGLLRRIIE--GGNVPNLIFYGPSGTGKTTVANIIAQRTNRP 67

Query: 82  FRSTSGPVIAKAGDLAALLTNLE-----DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
               +    A   D+  ++ ++      +  +L++DEI   +   ++ L   ME+ ++ L
Sbjct: 68  LHRLNA-TTASISDIKDIIADIGTLLAPEGVLLYLDEIQYFNKKQQQSLLEFMENGKITL 126

Query: 137 M--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           +    E P        LSR T+            P  DR              +  +  R
Sbjct: 127 IASTTENPFFYVFGAVLSRSTVFEFKQITAQDALPAIDR-------------GVSILEGR 173

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK---TITREIADAALL 251
                 L   +     IA    G  R A   L  +   A+    K   ++      A   
Sbjct: 174 LGGKLELE--EGVREHIASACGGDIRKAMNALELLASAAKSEQGKFLVSLDDAKTAAQKS 231

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ-QGFI 310
            +  D+ G    D+                    SA +   R +  D    Y+ +     
Sbjct: 232 AMRYDREGDAHFDIA-------------------SALMKSLRGSDPDAALHYLARLLEAG 272

Query: 311 QRTPRGRLLMPIAWQHLGIDIPH 333
             T   R L+  A + +G+  P 
Sbjct: 273 DMTTAIRRLLCSASEDVGMAYPQ 295


>gi|289811623|ref|ZP_06542252.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 144

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 37/126 (29%), Positives = 59/126 (46%), Gaps = 7/126 (5%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP  L ++ GQ    +  K    A +A    L  ++  GPPG GKTTLA+V+AR
Sbjct: 15  PLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIAR 72

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
               +    S        I +A + A    N   R +LF+DE+HR +   ++   P +ED
Sbjct: 73  YASADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED 132

Query: 132 FQLDLM 137
             +  +
Sbjct: 133 GTITFI 138


>gi|242769588|ref|XP_002341796.1| AAA family ATPase, putative [Talaromyces stipitatus ATCC 10500]
 gi|218724992|gb|EED24409.1| AAA family ATPase, putative [Talaromyces stipitatus ATCC 10500]
          Length = 528

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 71/334 (21%), Positives = 115/334 (34%), Gaps = 75/334 (22%)

Query: 17  ADISLLRPRTLEEFTGQVEAC--SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
                +RP++L+E  GQ        L+  IE  +              P  GKTT+A+V+
Sbjct: 126 PLAERMRPKSLDEVCGQDLVGPNGILRSLIEQDRV-------------PSTGKTTIARVI 172

Query: 75  ARELGVNFRSTSGPV--IAKAGDLAALLTN----LEDRDVLFIDEIHRLSIIVEEILYPA 128
           A  +G  F   +     IA+   + A   N    +  R +LF DEIHR S   +++L   
Sbjct: 173 ASMVGSRFVEINSTTSGIAECKKIFAEARNELGLMGRRTILFCDEIHRFSKTQQDVLLGP 232

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           +E   + L+    E PS +     LSR                                +
Sbjct: 233 VESGVVTLIAATTENPSFKVQNALLSRCRTFTL---------------------ERLTDD 271

Query: 187 DLKTIVQRGAKLTGLAV------TDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           D+ +I++R     G +        DE    +A  S G  R A  LL      +       
Sbjct: 272 DVTSILKRALATEGQSYSPSELVDDELIRYLATFSDGDARTALNLLELAMGLSNRPG--- 328

Query: 241 ITREIADAALLRL-AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           +T++    +L +    D+ G    D                   TISA     R +  D 
Sbjct: 329 MTKDALKKSLTKTLVYDRAGDQHYD-------------------TISAFHKSIRGSDPDA 369

Query: 300 IEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
              Y+ +       P    R L+ +A + +G+  
Sbjct: 370 ALYYLARMIQSGEDPLYIARRLIVVASEDIGLAD 403


>gi|311742339|ref|ZP_07716148.1| replication-associated recombination protein A [Aeromicrobium
           marinum DSM 15272]
 gi|311313967|gb|EFQ83875.1| replication-associated recombination protein A [Aeromicrobium
           marinum DSM 15272]
          Length = 455

 Score =  119 bits (297), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 71/324 (21%), Positives = 115/324 (35%), Gaps = 50/324 (15%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            +RPRTL+E  GQ    +      +      +    ++  GPPG GKTT+A +++     
Sbjct: 38  RMRPRTLDELVGQERLLAAGSPLRQMI--DGDQPLTIILWGPPGTGKTTIASLISAHTDR 95

Query: 81  NFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
            F   S  V A   ++  ++             VLF+DE+HR S   ++ L P +E+  +
Sbjct: 96  RFVEVSA-VSAGVKEVRDVIAGARRALTNGVETVLFVDEVHRFSKSQQDALLPGVENRWV 154

Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            L+    E P    +   LSR  L+   +        + DR                   
Sbjct: 155 SLVAATTENPHFSVISPLLSRSLLLTLESLTDADVTTVVDR---------------AVAD 199

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           +RG     + +TD+A   +   + G  R A   L              IT + A  A+ R
Sbjct: 200 ERGLAG-AVTLTDDARDHLVRLAGGDGRRALTYLEAAAGATTSQGRTAITVDDAALAVDR 258

Query: 253 LA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
            A   D+ G    D+                    SA +   R +  D    Y+ +    
Sbjct: 259 AAVRYDRQGDQHYDV-------------------TSAFIKSIRGSDVDAALHYLARMIEA 299

Query: 311 QRTPR--GRLLMPIAWQHLGIDIP 332
               R   R LM  A + +G+  P
Sbjct: 300 GEDARFVARRLMIHASEDIGMADP 323


>gi|319936498|ref|ZP_08010914.1| recombination protein rarA [Coprobacillus sp. 29_1]
 gi|319808613|gb|EFW05165.1| recombination protein rarA [Coprobacillus sp. 29_1]
          Length = 421

 Score =  119 bits (297), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 66/322 (20%), Positives = 117/322 (36%), Gaps = 48/322 (14%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +RP +L++  GQ        +F +  K         +  GPPG GKTTLA  +A +L
Sbjct: 6   AHRMRPTSLKDVLGQKHIIGENALFTQFVKKHHPM--STILYGPPGCGKTTLASALANDL 63

Query: 79  GVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
            + +R  +     K   D+      +     + IDE+HRL+   ++ L P +E+  L + 
Sbjct: 64  NIPYRIFNASTGNKKEMDIIIEEAKMSGELFVIIDEVHRLNKDKQDHLLPHIENGLLVIA 123

Query: 138 --VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
                 P         SR  +I           PL +   +    +    E+        
Sbjct: 124 GCTTANPYHSINPAIRSRCQIIEV--------KPLDEEDIMSGLNHALNCEN-------- 167

Query: 196 AKLTGLAVTDEAACEI-AMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
             L      +    E  A  S G  R A   L      + +  A TIT ++   +L +  
Sbjct: 168 -GLNHQFKVENGVLEYIAKLSSGDIRYAYNCLEVA---SILCDADTITLQMVKQSLTKAN 223

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY---MIQQGFIQ 311
                FD+ + +Y               +T+S      R +  +    Y   +I+   I+
Sbjct: 224 AQ---FDKDEDQY--------------YDTLSGLQKSIRGSDPNGAMYYLGKLIEANDIE 266

Query: 312 RTPRGRLLMPIAWQHLGIDIPH 333
              R R++   A++ +G+  P+
Sbjct: 267 SLER-RVIT-TAYEDIGLANPN 286


>gi|15643274|ref|NP_228318.1| recombination factor protein RarA/unknown domain fusion protein
           [Thermotoga maritima MSB8]
 gi|20178177|sp|Q9WYX8|Y508_THEMA RecName: Full=UPF0189 protein TM_0508
 gi|4981020|gb|AAD35593.1|AE001727_5 conserved hypothetical protein [Thermotoga maritima MSB8]
          Length = 599

 Score =  119 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 65/329 (19%), Positives = 111/329 (33%), Gaps = 55/329 (16%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
            E     LLRP+  E+F GQ     N  +     K     +   +  GPPG GKT++  +
Sbjct: 4   SEKPLSELLRPKDFEDFVGQDHIFGNKGILRRTLKTGN--MFSSILYGPPGSGKTSVFSL 61

Query: 74  VARELGVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           + R         S  V     I         L     + +LF+DEIHRL+   + +L   
Sbjct: 62  LKRYFNGEVVYLSSTVHGVSEIKNVLKRGEQLRKYGKKLLLFLDEIHRLNKNQQMVLVSH 121

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           +E   + L+    E PS   V   LSR                        +       E
Sbjct: 122 VERGDIVLVATTTENPSFVIVPALLSRCR---------------------ILYFKKLSDE 160

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           DL  I+++  ++  + + +     I   S G  R     L  V       H     + + 
Sbjct: 161 DLMKILKKATEVLNIDLEESVEKAIVRHSEGDARKLLNTLEIV-------HQAFKNKRVT 213

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
              L  L  +  G+ +                    +  SA +   R +  +    Y+++
Sbjct: 214 LEDLETLLGNVSGYTKESH----------------YDFASAFIKSMRGSDPNAAVYYLVK 257

Query: 307 QGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
              +   PR   R ++  A + +G+  P+
Sbjct: 258 MIEMGEDPRFIARRMIIFASEDVGLADPN 286


>gi|116805237|gb|ABK27669.1| putative ATPase (related to helicase subunit of Holliday junction
           resolvase) [Lactobacillus paracasei]
          Length = 295

 Score =  119 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 72/309 (23%), Positives = 115/309 (37%), Gaps = 63/309 (20%)

Query: 41  KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALL 100
           + FIE      + +  + F GPPG+GKTTLA+++AR     F + S  V +   ++  ++
Sbjct: 4   RPFIE-----HDEISPLNFWGPPGVGKTTLARIIARRTKAQFVTFSA-VTSGIKEIKQVM 57

Query: 101 TN------LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLS 152
                   L  + ++F+DEIHR +   ++   P +E   + L+    E PS       LS
Sbjct: 58  KEAEQNRELGQKTIVFVDEIHRFNKAQQDAFLPYVERGSIILIGATTENPSFEVNAALLS 117

Query: 153 R---FTLIAATT--RVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEA 207
           R   F L   T+   V LL   L+D                     RG  L  + +  + 
Sbjct: 118 RTRVFVLHGLTSAELVDLLQRALKDP--------------------RGYGLQKVKIGKKL 157

Query: 208 ACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL---LRLAIDKMGFDQLD 264
             +IA  + G  RIA   L      AE         +   A L     L  DK G +  +
Sbjct: 158 LAQIADFANGDARIALNTLEMAVTNAETKGGVITVTQADVAQLLTKKALLYDKNGEEHYN 217

Query: 265 LRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPI 322
           L                   ISA     R++  D    ++ +       P    R L+  
Sbjct: 218 L-------------------ISALHKSMRNSDVDAAIYWLARMLEAGEDPLYVARRLVRF 258

Query: 323 AWQHLGIDI 331
           A + +G+  
Sbjct: 259 ASEDIGMAD 267


>gi|46203510|ref|ZP_00051413.2| COG2256: ATPase related to the helicase subunit of the Holliday
           junction resolvase [Magnetospirillum magnetotacticum
           MS-1]
          Length = 175

 Score =  119 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 43/156 (27%), Positives = 62/156 (39%), Gaps = 9/156 (5%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D                  LRPR L E  GQ               +R+  L  ++F 
Sbjct: 1   MSDLFASAGLETGAPRPLADRLRPRRLSEVVGQEHLTGPDGALTRLLASRS--LGSLVFW 58

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIH 115
           GPPG GKTT+A+++A E  ++F   S        + K  + A    +     +LF+DEIH
Sbjct: 59  GPPGTGKTTVARLLAHETALHFEQISAIFSGIADLRKVFEAARKRRSTGQGTLLFVDEIH 118

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKI 149
           R +    +   P MED  + L+    E PS      
Sbjct: 119 RFNRAQLDAFLPVMEDGTVTLVGATTENPSFELNAA 154


>gi|56963348|ref|YP_175079.1| recombination factor protein RarA [Bacillus clausii KSM-K16]
 gi|56909591|dbj|BAD64118.1| AAA family ATPase [Bacillus clausii KSM-K16]
          Length = 420

 Score =  119 bits (297), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 64/324 (19%), Positives = 115/324 (35%), Gaps = 41/324 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP ++EE  GQ        +     KA    L  ++  GPPG GKT++A+ +A 
Sbjct: 5   PLAYRMRPTSVEEVIGQHSLLGEGMMLSRMIKANQ--LSSMVLYGPPGTGKTSIARAIAG 62

Query: 77  ELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
             G++FR  +  V  K   + A     +    +L +DE+HRL    ++ L P +E   L 
Sbjct: 63  SSGMHFRMLNATVHHKKDMETAVEEAKMYGSLLLILDEVHRLDKAKQDFLLPHLESGLLL 122

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           L+      P         SR  +                R                   +
Sbjct: 123 LIGATTANPYHSINPAIRSRCHIFELEQLEPDDIEKALRR--------------ALADEE 168

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA--EVAHAKTITREIADAALL 251
           RG     + +  EA   +A+   G  R A   L         +    +++T   A+ ++ 
Sbjct: 169 RGLGHEKIDIAPEALRHLALACGGDVRAALNALELAVLSTPKQPDGTRSVTLRSAEQSIQ 228

Query: 252 RL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
           +     DK G    D+  L+   ++  G  V              ++  L    +++ G 
Sbjct: 229 KKSIQHDKDGDAHYDV--LSAFQKSIRGSDV------------NASLHYLAR--LLEAGD 272

Query: 310 IQRTPRGRLLMPIAWQHLGIDIPH 333
           +      R L+ IA++ + +  P 
Sbjct: 273 LISIH--RRLLVIAYEDISLANPQ 294


>gi|205374224|ref|ZP_03227023.1| recombination factor protein RarA [Bacillus coahuilensis m4-4]
          Length = 177

 Score =  119 bits (297), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 37/155 (23%), Positives = 65/155 (41%), Gaps = 5/155 (3%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            +RP+T+++  GQ       K+     +A+   L  ++  GPPG+GKT++A  +A     
Sbjct: 9   RMRPKTIDDIIGQQHLVGEGKIIRRMVEAKQ--LSSMILYGPPGIGKTSIASAIAGSTKY 66

Query: 81  NFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137
            FR  +     K   ++ A    +  + VL +DE+HRL    ++ L P +E+  + L+  
Sbjct: 67  AFRMLNAVTSNKKDMEIVAAEAKMSGKVVLLLDEVHRLDKGKQDFLLPHLENGSITLIGA 126

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
               P         SR  +           N L  
Sbjct: 127 TTANPYHSINPAIRSRCQIFELEPLSIDDLNRLLS 161


>gi|269216091|ref|ZP_06159945.1| replication-associated recombination protein A [Slackia exigua ATCC
           700122]
 gi|269130350|gb|EEZ61428.1| replication-associated recombination protein A [Slackia exigua ATCC
           700122]
          Length = 443

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 74/329 (22%), Positives = 114/329 (34%), Gaps = 50/329 (15%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            +RPR+L E  GQ +A         A    A+AL  V+  GP G GKT++A+++A E   
Sbjct: 22  RMRPRSLSELRGQKDAVGPGSWL--ALAITADALSSVILFGPAGTGKTSIARIIA-ETTR 78

Query: 81  NFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           +       +     DL   ++  E R        +LF+DEIHR S   ++ L  A+E+  
Sbjct: 79  SAFVEVSAIGGTVADLRREISAAERRLASAGTKTILFVDEIHRFSRSQQDALLHAVENRV 138

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAAT-----TRVGLLTNPLQDRFGIPIRLNFYEIE 186
           + L+    E P        +SR  ++            +L   L D  G+  R  F    
Sbjct: 139 VILVGATTENPFFEVNSALISRSRIVELHALSDADIASILDAALADERGLRGRFAF---- 194

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
                             D AA  I   S G  R A   L      AE    K       
Sbjct: 195 -----------------ADGAARAIVDLSGGDARGALTTLELASQLAESEGRKAGADAPY 237

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
                 +A+          R L        G  +  + +SA +   R    D    +M +
Sbjct: 238 LVTPDMVAV------VTPRRALP----YDKGKDMHYDVVSAFIKSMRGGDPDAALYWMAR 287

Query: 307 QGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                  P+   R +  +A + +G   P 
Sbjct: 288 MLEGGEDPKFIARRIYILASEDIGNADPQ 316


>gi|164688546|ref|ZP_02212574.1| hypothetical protein CLOBAR_02191 [Clostridium bartlettii DSM
           16795]
 gi|164602959|gb|EDQ96424.1| hypothetical protein CLOBAR_02191 [Clostridium bartlettii DSM
           16795]
          Length = 423

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 63/329 (19%), Positives = 116/329 (35%), Gaps = 47/329 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP  +E+  GQ       K+     +   + + +++  GPPG GKTTLA ++A 
Sbjct: 3   PLADRLRPEAIEDMVGQSHIIGKGKIINRLIE--NKTIPNMILYGPPGTGKTTLANIIAN 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAME 130
             G  +   +  V     ++   + N +         +L +DEI  L+   ++ L   +E
Sbjct: 61  VTGKKYIKLNA-VNCGVKEIKDAIDNSKRDLFSYNGIILMLDEIQALNKKQQQSLLEVIE 119

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +  + L+    + P     K  LSR T+                R  I      Y  E +
Sbjct: 120 EGSVTLIASTADNPYFVVYKAILSRSTIFEFKPIQKEDIYIGLKR-AINRLKPLYTYESI 178

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD- 247
                           D A   I+    G  R A   L    +      + ++   + D 
Sbjct: 179 TA-------------EDSALRYISETCNGDMRSALNKLELAFNLGIDIGSNSVNITLDDV 225

Query: 248 ---AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
              +++  L  D  G D   +  L+   ++  G            S+   A+  L    +
Sbjct: 226 VNSSSMKILNYDNKGDDSYSV--LSAFHKSLRG------------SDENAALHYLAR--L 269

Query: 305 IQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           I+   +Q     R L+ +A + +G+ +P 
Sbjct: 270 IKSQDMQSII--RRLLCVASEDVGLAVPQ 296


>gi|150865091|ref|XP_001384164.2| replication factor ATPase [Scheffersomyces stipitis CBS 6054]
 gi|149386347|gb|ABN66135.2| replication factor ATPase [Scheffersomyces stipitis CBS 6054]
          Length = 786

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 62/249 (24%), Positives = 98/249 (39%), Gaps = 33/249 (13%)

Query: 2   MDREGLLSRNVSQED------ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALD 55
           MD E   + N S              +RPR+L+E+ GQ          I     R   L 
Sbjct: 1   MDNEESPTSNTSSNALSILSLPLAEAIRPRSLDEYIGQKHLIDPDNGAITN-FMRLRYLP 59

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------ 103
            +L  GPPG+GKTT+A ++A E G  F   S    A   DL  L T +            
Sbjct: 60  SMLLYGPPGVGKTTMASIIAEECGYVFVELSATA-ATVADLRDLSTTIMAENRKRASRGE 118

Query: 104 -EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAAT 160
            E + V+FIDEIHR ++  ++ L P +E+     +      P  R  +  LSR    +  
Sbjct: 119 EELKVVVFIDEIHRFTVSQQDFLLPYVEEGNFVFIGATTIDPRKRIRRAILSRVQCFSLN 178

Query: 161 TRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPR 220
           T        L +   + +       E+++     G +   + + D++   I   + G  R
Sbjct: 179 T--------LNNNEVLEVLKRAMRFENIRRKAVHGLR--CIDLDDQSLSLIIKTAGGDTR 228

Query: 221 IAGRLLRRV 229
            A  L+  +
Sbjct: 229 KAINLIELL 237


>gi|114778010|ref|ZP_01452910.1| ATPase [Mariprofundus ferrooxydans PV-1]
 gi|114551616|gb|EAU54169.1| ATPase [Mariprofundus ferrooxydans PV-1]
          Length = 448

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 76/329 (23%), Positives = 120/329 (36%), Gaps = 56/329 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP  L++  GQ +  +    F  +           +F GPPG+GKTTLA V+A 
Sbjct: 21  PLAYRIRPAVLQDVAGQPDLTAADSWF--STMVSEGRCCSCIFWGPPGVGKTTLATVMAD 78

Query: 77  ELGVNFRSTSGPVIAKAG--DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
             G+ F   S     KA   D+     +     +LF+DEIHR +   +++L P +ED  L
Sbjct: 79  AAGIPFVQLSAVSAGKAEVQDVVKRARSAGQTWLLFLDEIHRFNKAQQDVLLPCIEDGTL 138

Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            L+    E PS       LSR  +I                          +  D+  I+
Sbjct: 139 VLVGATTENPSFSLNNALLSRCRVIVL---------------------QALQASDVAVIL 177

Query: 193 QRGAKLTG-----LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           +R  +  G      ++ D+A   +A  S G  R A   L  +             + +  
Sbjct: 178 KRACRYLGDQAKAFSLDDDALVWLAENSDGDARYALNALESLFQADAERCWS--LQAVQQ 235

Query: 248 AALLRLA-IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
            +L R A  D+ G    DL                   ISA     RD+  D    ++ +
Sbjct: 236 QSLRRAARYDRDGDAHYDL-------------------ISALHKCIRDSDPDAAVYWLAR 276

Query: 307 QGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                  P    R L+ +A + +G+  P 
Sbjct: 277 MLEAGEQPLYIARRLIRMATEDIGLADPK 305


>gi|50292021|ref|XP_448443.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49527755|emb|CAG61404.1| unnamed protein product [Candida glabrata]
          Length = 559

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 67/330 (20%), Positives = 123/330 (37%), Gaps = 38/330 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP+ + ++ GQ    S     +     +   +  ++  GPPG+GKTTLA+++ +
Sbjct: 117 PLSEKLRPKEIRDYVGQQHILSQESGVLN-KYVQEGLVPSMILWGPPGVGKTTLARLLTK 175

Query: 77  ELGVN----FRSTSGPVIAKAGDLAALLTN-------LEDRDVLFIDEIHRLSIIVEEIL 125
              ++        +    A A +L ++           + R VLFIDEIHR +   +++L
Sbjct: 176 TASLHGSRYTMVETSATKANAQELRSIFEKGRKEYQLTKRRVVLFIDEIHRFNKAQQDLL 235

Query: 126 YPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
            P +E+  + L+    E PS +     +SR         V +L    +    I +     
Sbjct: 236 LPHVENGDIVLIGATTENPSFQLNNALISRCH-------VFVLEKLSETEVIIILSRGVA 288

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            +  L+ ++        L ++      +   S G  R A  LL  +   +     K +T 
Sbjct: 289 LLNKLRNVIWNV--KNPLKLSRSILVYLCDISVGDARRALNLLEMIE-VSTRHVEKELTI 345

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           E     +     +  G +                G    +TISA     R + E+    Y
Sbjct: 346 EQIREIIKNN--NSQGLNTY----------YDTKGDNHYDTISAFHKAVRGSDENASLYY 393

Query: 304 MIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
           + +       P    R ++ IA + +GI  
Sbjct: 394 LGRMLQGGEDPLYIARRMIRIASEDIGIRD 423


>gi|281411727|ref|YP_003345806.1| Appr-1-p processing domain protein [Thermotoga naphthophila RKU-10]
 gi|281372830|gb|ADA66392.1| Appr-1-p processing domain protein [Thermotoga naphthophila RKU-10]
          Length = 599

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 65/329 (19%), Positives = 112/329 (34%), Gaps = 55/329 (16%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
            E     LLRP+  E+F GQ     +  +     K     +   +  GPPG GKT++  +
Sbjct: 4   SEKPLNELLRPKDFEDFVGQDHIFGDKGILRRTLKTGN--MFSSILYGPPGSGKTSVFSL 61

Query: 74  VARELGVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           + R         S  V     I         L     + +LF+DEIHRL+   + +L   
Sbjct: 62  LKRYFNGEVVYLSSTVHGVSEIKNVLKRGEQLRKYGKKLLLFLDEIHRLNKNQQMVLVSH 121

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           +E   + L+    E PS   V   LSR                        +       E
Sbjct: 122 VERGDIVLVATTTENPSFAIVPALLSRCR---------------------ILYFKKLSDE 160

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           DL  I+++  ++  L + + A   I   S G  R     L  V             +++ 
Sbjct: 161 DLMKILKKATRVLKLDLEETAEKAIVKHSEGDARKLLNTLEIVYQA-------FKNKKVT 213

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
              L  L  +  G+ +                    +  SA +   R +  +    Y+++
Sbjct: 214 LEDLETLLGNVSGYTKESH----------------YDFASAFIKSMRGSDPNAAVYYLVK 257

Query: 307 QGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
              +   PR   R ++  A + +G+  P+
Sbjct: 258 MIEMGEDPRFIARRMIIFASEDVGLADPN 286


>gi|227542196|ref|ZP_03972245.1| crossover junction endodeoxyribonuclease [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227182025|gb|EEI62997.1| crossover junction endodeoxyribonuclease [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 574

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 60/263 (22%), Positives = 100/263 (38%), Gaps = 46/263 (17%)

Query: 2   MDREGLLSRNVSQEDADIS------------LLRPRTLEEFTGQVEACSNLKVFIEAAKA 49
           M ++ L     ++ D+                +RPR+L+E  GQ    +  K      + 
Sbjct: 1   MAQDSLFGPQDTKNDSAQRYFHPGGHAPLAVRMRPRSLDEVVGQQHLLAPGKPLRRLIEG 60

Query: 50  RAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED---- 105
             EA   V+  GPPG GKTT+A +++   G N       + +   ++ A++         
Sbjct: 61  DGEA--SVILYGPPGTGKTTIASLISVATG-NRFVGLSALDSGVKEVRAVIDTARKKLIE 117

Query: 106 --RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATT 161
             R VLFIDE+HR S   ++ L  A+E+  + L+    E PS                  
Sbjct: 118 GTRTVLFIDEVHRFSKTQQDALLAAVENRIVLLVAATTENPSFAV--------------- 162

Query: 162 RVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRI 221
                 N       + ++L     EDLKT+V R  +       +    + A+    T  +
Sbjct: 163 ------NAPLLSRSLLLQLESLGPEDLKTVVLRALEDERGFGGEVGITDDALDQLVT--L 214

Query: 222 AGRLLRRVRDFAEVAHAKTITRE 244
           AG   RR   + E A     + +
Sbjct: 215 AGGDARRALTYVEAAAEGARSID 237



 Score = 38.1 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 2/75 (2%)

Query: 260 FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GR 317
            + L+      + R    G    + ISA +   R +  D    Y+ +       PR   R
Sbjct: 367 LETLEETINKAVVRYDRDGDQHYDIISAFIKSVRGSDVDAALHYLARMIEGGEDPRFIAR 426

Query: 318 LLMPIAWQHLGIDIP 332
            L+ +A + +G+  P
Sbjct: 427 RLIILASEDIGMADP 441


>gi|222099137|ref|YP_002533705.1| recombination factor protein RarA/unknown domain fusion protein
           [Thermotoga neapolitana DSM 4359]
 gi|221571527|gb|ACM22339.1| recombination factor protein RarA/unknown domain fusion protein
           [Thermotoga neapolitana DSM 4359]
          Length = 599

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 64/331 (19%), Positives = 116/331 (35%), Gaps = 57/331 (17%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           + E     LLRP   ++F+GQ        +     K     +   +  GPPG GKT++  
Sbjct: 3   TSEKPLTELLRPEDFDDFSGQDHLFGEDGILRRTLKTGN--MFSAILYGPPGSGKTSVFS 60

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALL------TNLEDRDVLFIDEIHRLSIIVEEILY 126
           ++ R         S  V     ++ ++L           + +LF+DEIHRL+   + +L 
Sbjct: 61  LLKRYFNGEVVYLSSTV-HGVSEIKSVLKRGEQMKRYGKKLLLFLDEIHRLNKNQQAVLV 119

Query: 127 PAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
             +E   + L+    E PS   +   LSR                        +      
Sbjct: 120 THVERGDIILVATTTENPSFAVIPALLSRCK---------------------ILYFKPLS 158

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
             DL  IV++  K   + + D+    +   + G  R   RLL  +    +V   K +T E
Sbjct: 159 ENDLLEIVEKAVKKLNMKLDDDVKKALVRNAEGDAR---RLLNTLEIVYQVFKDKEVTIE 215

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
                L   ++     +  D                     SA +   R +  +    Y+
Sbjct: 216 DL-KTLFGKSVSYSKEEHYDF-------------------TSAFIKSMRGSDPNAAIYYL 255

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           ++   +   PR   R ++  A + +G+  P+
Sbjct: 256 VKMIEMGEDPRFIARRMIIFASEDIGLADPN 286


>gi|297623701|ref|YP_003705135.1| AAA ATPase central domain-containing protein [Truepera radiovictrix
           DSM 17093]
 gi|297164881|gb|ADI14592.1| AAA ATPase central domain protein [Truepera radiovictrix DSM 17093]
          Length = 439

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 74/332 (22%), Positives = 115/332 (34%), Gaps = 60/332 (18%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RPR L E  GQ       K     A  R   L  +L  GPPG+GKTTLA+++A 
Sbjct: 10  PLAERVRPRQLHEIVGQRHLLGPGKPLAVMATGR---LRSLLLWGPPGVGKTTLARLLAE 66

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAME 130
             G +F   S  V A   ++ A+            + +LF+DE+HR +   +++L P +E
Sbjct: 67  SSGAHFVGLSA-VTAGVKEVRAVAAEAAERRAQGGQTLLFLDEVHRFNKAQQDLLLPFVE 125

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           D  L L+    E PS                       T  L+ R  +   L     E++
Sbjct: 126 DGTLTLIGATTENPSFEV--------------------TGALRSRLQL-FVLEPLTQEEV 164

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAG-----RLLRRVRDFAEVAHAKTITR 243
           +T++ R             A E+   + G           R L  +   A  AH   +  
Sbjct: 165 RTLLTRA---LTHPEGFGGALEVTAEALGALAAWALGDGRRALAALEAAAAYAHEGRLAL 221

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
               AAL    +                     GG       SA     R    D    +
Sbjct: 222 PGVRAALQAKGL-----------------ELDKGGEHFYNLTSALHKAVRGCDPDAALYW 264

Query: 304 MIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           + +       P    R L+ +A + +G+  P+
Sbjct: 265 LARLLAGGADPLYVARRLVRVASEDVGLADPN 296


>gi|222824546|ref|YP_002576120.1| ATPase, AAA family protein [Campylobacter lari RM2100]
 gi|222539767|gb|ACM64868.1| ATPase, AAA family protein [Campylobacter lari RM2100]
          Length = 396

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 74/316 (23%), Positives = 120/316 (37%), Gaps = 51/316 (16%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+TL+E  GQ       K FI+A+K     L H +F GP G GKT+ A+ +A E  ++F
Sbjct: 9   RPKTLDEVLGQENLVEIFKKFIQASK-----LPHSIFFGPAGCGKTSFARAIAYEYKLDF 63

Query: 83  RSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
               G    K  +L  +L+N E+   + ++FIDE+HRLS   +E+L   +E+ Q  L +G
Sbjct: 64  YEFDGGNF-KLEELRKILSNYENSLYKPLIFIDEVHRLSKTQQEMLLIPLEN-QKCLFIG 121

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199
                         FT          LT+ ++ R  +       E +DL+ +  +  +  
Sbjct: 122 ASTEN-------PYFT----------LTSGIRSRS-MLFEFEGLEYKDLEKLATKVQEKL 163

Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259
              + D+A   +   S    R    L      FA    +  IT E        +  D   
Sbjct: 164 QCKIDDDAKDFLITSSANDARSFLNLCE----FALALDSTKITLETLKKLRANVLSDGTS 219

Query: 260 FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ--GFIQRTPRGR 317
                 R  + + ++  G  V                 D    Y+ +   G        R
Sbjct: 220 SKDTHYRLASSMIKSLRGSDV-----------------DASLYYLARLIDGGESADFIAR 262

Query: 318 LLMPIAWQHLGIDIPH 333
            L+  A + +    P 
Sbjct: 263 RLVIFASEDISNANPQ 278


>gi|218507489|ref|ZP_03505367.1| recombination factor protein RarA [Rhizobium etli Brasil 5]
          Length = 250

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 52/196 (26%), Positives = 84/196 (42%), Gaps = 10/196 (5%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           +   V+        LRP+TL E TGQ     +  V     +  + +L  ++F GPPG GK
Sbjct: 10  VPEEVAARRPLADRLRPKTLAEVTGQDHLTGDDGVLKRMIE--SGSLGSMIFWGPPGTGK 67

Query: 68  TTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           TT+A+++  E G+ F   S        + K  + A L      + +LF+DEIHR +   +
Sbjct: 68  TTVARLLPGEAGLAFEHISAIFSGVADLKKVFETARLRRMDGRQTLLFVDEIHRFNRAQQ 127

Query: 123 EILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATT-RVGLLTNPLQDRFGIPIR 179
           +   P MED  + L+    E PS       LSR  ++   +     L   LQ    I  +
Sbjct: 128 DSFLPVMEDGTVILVGATTENPSFELNAALLSRARVLTLKSHDEQSLEELLQRAEAIEQK 187

Query: 180 LNFYEIEDLKTIVQRG 195
                 E   ++++  
Sbjct: 188 PLPLTEEARASLIRMA 203


>gi|148269554|ref|YP_001244014.1| recombination factor protein RarA/unknown domain fusion protein
           [Thermotoga petrophila RKU-1]
 gi|147735098|gb|ABQ46438.1| Appr-1-p processing domain protein [Thermotoga petrophila RKU-1]
          Length = 599

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 66/329 (20%), Positives = 111/329 (33%), Gaps = 55/329 (16%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
            E     LLRP+  E+F GQ     +  +     K     +   +  GPPG GKT++  +
Sbjct: 4   SEKPLNELLRPKDFEDFVGQDHIFGDKGILRRTLKTGN--MFSSILYGPPGSGKTSVFSL 61

Query: 74  VARELGVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           + R         S  V     I         L     + +LF+DEIHRL+   + +L   
Sbjct: 62  LKRYFNGEVVYLSSTVHGVSEIKNVLKRGEQLRKYGKKLLLFLDEIHRLNKNQQMVLVSH 121

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           +E   + L+    E PS   V   LSR                        +       E
Sbjct: 122 VERGDIVLVATTTENPSFAIVPALLSRCR---------------------ILYFKKLSDE 160

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           DL  I+++  ++  L + + A   I   S G  R     L  V       H     +   
Sbjct: 161 DLMKILKKATRVLKLDLEETAEKAIVKHSEGDARKLLNTLEIV-------HQAFKNKRAT 213

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
              L  L  +  G+ +                    +  SA +   R +  +    Y+++
Sbjct: 214 LEDLETLLGNVSGYTKESH----------------YDFASAFIKSMRGSDPNAAVYYLVK 257

Query: 307 QGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
              +   PR   R ++  A + +G+  P+
Sbjct: 258 MIEMGEDPRFIARRMIIFASEDVGLADPN 286


>gi|154498121|ref|ZP_02036499.1| hypothetical protein BACCAP_02102 [Bacteroides capillosus ATCC
           29799]
 gi|150273111|gb|EDN00268.1| hypothetical protein BACCAP_02102 [Bacteroides capillosus ATCC
           29799]
          Length = 421

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 59/322 (18%), Positives = 117/322 (36%), Gaps = 46/322 (14%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP +L++  GQ        +     +  +  + +++F GP G GKTT+A ++A+  G  
Sbjct: 10  IRPESLDDVVGQRHILGEGGLLRRIIE--SGKIPNLVFYGPSGTGKTTVANIIAKRSGRA 67

Query: 82  FRSTSGPVIAKAGDLAALLTNLE-----DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
            R  +        D+  ++ ++      +  +L++DEI   +   ++ L   +E   + L
Sbjct: 68  LRRINA-TTGSLSDIKDVIADVGTMLAPNGILLYLDEIQYFNKKQQQSLLEVIEKGDVTL 126

Query: 137 M--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           +    E P        LSR T+            P  +R GI I       + +     R
Sbjct: 127 VASTTENPYFYVYNAVLSRSTVFEFKPVTAEDVLPAVNR-GITIMEQRLGEQAVCEDGVR 185

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR-- 252
                           IA    G  R A   +  + + A               A+ +  
Sbjct: 186 --------------EHIASACGGDVRKAMNAVELLLNSARRKDGVLTVTLEDAKAVAQRS 231

Query: 253 -LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            +  D+ G D  D   ++ + ++  G            S+P  A+  L    +++ G + 
Sbjct: 232 AMRYDREGDDHYD--IVSALQKSVRG------------SDPDAALHYLAR--LLEAGDLV 275

Query: 312 RTPRGRLLMPIAWQHLGIDIPH 333
                R +M +A + +G+  P 
Sbjct: 276 SAC--RRMMVMACEDVGLAYPQ 295


>gi|213052480|ref|ZP_03345358.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
          Length = 354

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 66/289 (22%), Positives = 97/289 (33%), Gaps = 38/289 (13%)

Query: 54  LDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDV 108
           L  ++  GPPG GKTTLA+V+AR    +    S        I +A + A    N   R +
Sbjct: 3   LHSMILWGPPGTGKTTLAEVIARYASADVERISAVTSGVKEIREAIERARQNRNAGRRTI 62

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLL 166
           LF+DE+HR +   ++   P +ED  +  +    E PS       LSR  +    +     
Sbjct: 63  LFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLTTDD 122

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
              + D                     RG     + + DE    IA    G  R A   L
Sbjct: 123 IEQVLD--------------QAMQDKTRGYGDQDIVLPDETRRAIAELVNGDARRALNTL 168

Query: 227 RRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETIS 286
             + D AE   +          ALL     +              AR    G    + IS
Sbjct: 169 EMMADMAEADDSGKRVL---LPALLTEIAGERS------------ARFDNKGDRFYDLIS 213

Query: 287 AGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           A     R +  D    +  +       P    R  + IA + +G   P 
Sbjct: 214 ALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPR 262


>gi|161760546|ref|NP_907435.2| recombination factor protein RarA [Wolinella succinogenes DSM 1740]
          Length = 396

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 69/325 (21%), Positives = 120/325 (36%), Gaps = 58/325 (17%)

Query: 19  ISLLRPRTLEEFTGQVEACS---NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
             LLRP + E+  GQ         L+  IE       +L H  F GPPG GKT+ A+++A
Sbjct: 5   AQLLRPTSFEDLIGQEHLFGANAPLRRLIE-----HGSLPHAFFYGPPGTGKTSAAKIIA 59

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDF 132
           + L   F   +     K  +L + L   ++   + +LFIDE+HRLS   +E+L P ME+ 
Sbjct: 60  KRLDRPFALFNATTF-KIEELRSYLKEYKNALLKPLLFIDEVHRLSKNQQEVLLPLMENH 118

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           +  ++    E P                       +T  ++ R  +         ++L+ 
Sbjct: 119 EAIIIGASTENPYF--------------------AMTGAIRSRS-MLFEFKPLGKKELEI 157

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           +++R  +   + + + A   +   S G  R    LL       E   +    +     +L
Sbjct: 158 LLERVCENHSILLDNSARDYLLRSSEGDARAMLNLLDCAYSLGESPLSLETLKSFRPVSL 217

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
                   G  + D  Y                  SA +   R + E+    Y+ +    
Sbjct: 218 ------HEGSSEGDTHYNLA---------------SAMIKSIRGSDENAAIYYLARLIEG 256

Query: 311 QRTPR--GRLLMPIAWQHLGIDIPH 333
              P    R L+ +A + +G   P 
Sbjct: 257 GENPEFIARRLVILASEDIGNANPQ 281


>gi|170288230|ref|YP_001738468.1| appr-1-p processing domain-containing protein [Thermotoga sp. RQ2]
 gi|170175733|gb|ACB08785.1| Appr-1-p processing domain protein [Thermotoga sp. RQ2]
          Length = 599

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 64/329 (19%), Positives = 110/329 (33%), Gaps = 55/329 (16%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
            E     LLRP+  E+F GQ     +  +     K     +   +  GPPG GKT++  +
Sbjct: 4   SEKPLNELLRPKDFEDFVGQDHIFGDKGILRRTLKTGN--MFSSILYGPPGSGKTSVFSL 61

Query: 74  VARELGVNFRSTSGPV-----IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           + R         S  V     I         L     + +LF+DEIHRL+   + +L   
Sbjct: 62  LKRYFNGEVVYLSSTVHGVSEIKNVLKRGEQLRKYGKKLLLFLDEIHRLNKNQQMVLVSH 121

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           +E   + L+    E PS   V   LSR                        +       E
Sbjct: 122 VERGDIVLVATTTENPSFAIVPALLSRCR---------------------ILYFKKLSDE 160

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           DL  I+++  ++  + + +     I   S G  R     L  V       H     +   
Sbjct: 161 DLMKILKKATEVLNIDLEETVEKAIVRYSEGDARKLLNTLEIV-------HQAFKNKRAT 213

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
              L  L  +  G+ +                    +  SA +   R +  +    Y+++
Sbjct: 214 LEDLETLLGNVSGYTKESH----------------YDFASAFIKSMRGSDPNAAVYYLVK 257

Query: 307 QGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
              +   PR   R ++  A + +G+  P+
Sbjct: 258 MIEMGEDPRFIARRMIIFASEDVGLADPN 286


>gi|329769837|ref|ZP_08261237.1| hypothetical protein HMPREF0433_01001 [Gemella sanguinis M325]
 gi|328838013|gb|EGF87635.1| hypothetical protein HMPREF0433_01001 [Gemella sanguinis M325]
          Length = 415

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 62/323 (19%), Positives = 119/323 (36%), Gaps = 43/323 (13%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +  I+ LRP+ +++  GQ       KV  +     ++ +   +  GPPG GKT++A  +A
Sbjct: 2   ETLINRLRPKKIDDIIGQHHLIGENKVLTK--IVTSKKMFSFILYGPPGTGKTSIANALA 59

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
            EL   F+  +  V     DL  ++   +   + +L +DE HRL+  +++IL P +E   
Sbjct: 60  NELDYKFKILNA-VNCTKKDLTTVIEESKRFKKVILLLDEFHRLTKPMQDILLPEIEYDN 118

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + ++      P         SR  +                        + Y  E LK I
Sbjct: 119 IYVIGCTTNNPYHTVNPAIRSRLIIFELKQVSEN---------------DIY--EYLKKI 161

Query: 192 VQRGAKL-TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
            +        L + D+    I++ S G  R +      + + +      T  + ++ +  
Sbjct: 162 SKNNEIFPKNLTIDDDVLKTISLNSSGDLRFSLNTFEILYNLSNENEHITKEKLLSLSLG 221

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
                DK G    D   ++   ++  G  V        L              +I  G +
Sbjct: 222 NFKNYDKDGDAFYD--IISAFQKSIRGSDVDASLYYLAL--------------LIDSGDL 265

Query: 311 QRTPRGRLLMPIAWQHLGIDIPH 333
                 R +  IA++ +G+  P+
Sbjct: 266 DTIY--RRMSVIAYEDIGLANPN 286


>gi|227549156|ref|ZP_03979205.1| conserved hypothetical protein [Corynebacterium lipophiloflavum DSM
           44291]
 gi|227078716|gb|EEI16679.1| conserved hypothetical protein [Corynebacterium lipophiloflavum DSM
           44291]
          Length = 107

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 34/97 (35%), Positives = 54/97 (55%)

Query: 236 AHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDA 295
                +    A AAL    +D++G D+LD   L  + R  GGGPVG+ T++  + E    
Sbjct: 1   HGDGRVDVAAARAALEVFDVDELGLDRLDRAVLNSLIRGHGGGPVGVSTLAIAVGEEPGT 60

Query: 296 IEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           +E++ EPY+++ G + RT RGR+    AW H+G+  P
Sbjct: 61  VEEVCEPYLVRAGLMSRTGRGRVATAAAWHHVGVTPP 97


>gi|326329811|ref|ZP_08196131.1| ATPase, AAA family [Nocardioidaceae bacterium Broad-1]
 gi|325952397|gb|EGD44417.1| ATPase, AAA family [Nocardioidaceae bacterium Broad-1]
          Length = 448

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 79/345 (22%), Positives = 119/345 (34%), Gaps = 60/345 (17%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
            R G LS +          +RPRTLEE  GQ    +      +  +        +L  GP
Sbjct: 13  SRGGSLSHSDHAAAPLAVRMRPRTLEELVGQSSLRAAGSPLHQVVEGGQSL--SLLLWGP 70

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIH 115
           PG GKTT+A +V+R     F   S  V A   ++ A + +            VLF+DE+H
Sbjct: 71  PGTGKTTIASIVSRSTDRRFVEISA-VSAGVKEVRAAIDSARAELVATGKETVLFVDEVH 129

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAAT-----TRVGLLTN 168
           R S   ++ L P +E+  + L+    E P    +   LSR  L+           G+L  
Sbjct: 130 RFSKAQQDALLPGVENRWVTLVAATTENPFFSVISPLLSRSLLLRLESLTDDDIRGVLLR 189

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            L D  G+   +     E L  +V+        A       E A  +     I      R
Sbjct: 190 ALDDERGLGGSVTI-SDEALDHLVRLAGG---DARRSLTYLEAAAGAASEGEITLEAAER 245

Query: 229 VRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAG 288
             D A V                    D+ G    D+                   +SA 
Sbjct: 246 AVDQAAVR------------------YDRQGDQHYDV-------------------VSAF 268

Query: 289 LSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
           +   R +  D    Y+ +       PR   R LM +A + +G+  
Sbjct: 269 IKSVRGSDADAALHYLARMIEAGEDPRFIARRLMILASEDIGLAD 313


>gi|296420764|ref|XP_002839938.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295636146|emb|CAZ84129.1| unnamed protein product [Tuber melanosporum]
          Length = 422

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 66/324 (20%), Positives = 114/324 (35%), Gaps = 51/324 (15%)

Query: 22  LRPRTLEEFTGQVEA--CSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +RP+ L++  GQ        L+  IE  K     +  ++  G  G GKTT+A+V+A    
Sbjct: 1   MRPKNLDDIHGQELVGRRGVLRGLIEEGK-----VPSMILWGAAGCGKTTIARVIAAMSS 55

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
             F   S    +   D   +    +        R +LF DEIHR +   +++    +E  
Sbjct: 56  CRFIEISATA-SGVNDCKKIFIEAKNELVLTGRRTILFCDEIHRYTKAQQDVFLAPVEKG 114

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           ++ L+    E PS +     LSR    A           +  R    +  +  + +   T
Sbjct: 115 EITLIGATTENPSFKVQSALLSRCRTFALNKLSQADIESILHR--ALLSESLLDEKKGHT 172

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           +V   +KL   ++ +  A      + G  R    LL      A       IT+E    +L
Sbjct: 173 VV---SKLLDTSMIEYLA----RFADGDARAGLNLLELSLGLATSPG---ITQEQIKKSL 222

Query: 251 LRL-AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
                 D+ G    D                   TISA     R +  D    ++ +   
Sbjct: 223 AHTIIYDRAGDAHYD-------------------TISAFHKSIRGSDPDGAIFWLTRMLK 263

Query: 310 IQRTPR--GRLLMPIAWQHLGIDI 331
               P    R ++ +A + +G+  
Sbjct: 264 GGEDPLFIARRMIVMASEDIGLAD 287


>gi|78776412|ref|YP_392727.1| recombination factor protein RarA [Sulfurimonas denitrificans DSM
           1251]
 gi|78496952|gb|ABB43492.1| Recombination protein MgsA [Sulfurimonas denitrificans DSM 1251]
          Length = 393

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 64/321 (19%), Positives = 117/321 (36%), Gaps = 55/321 (17%)

Query: 21  LLRPRTLEEFTGQVEA---CSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           LLRP   +E  GQ       + L+V  +        L H  F GP G GKT++A+++A+ 
Sbjct: 7   LLRPSNFDELIGQDHLSKDKAPLRVLCQ-----KGVLGHSFFFGPSGTGKTSIARIIAKT 61

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLE---DRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           + + F   +   I K   L A+    +    + ++FIDE+HRL+   +E+L P ME+   
Sbjct: 62  MELPFYEFNATSI-KIEQLRAIFEQYKNTLQKPLIFIDEVHRLAKNQQEVLLPVMENNS- 119

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
            L++G                          LT+ ++ R  +   L+    E L  +++R
Sbjct: 120 ALIIGASTENPFFS-----------------LTSAIRSRS-MLFELHHISNEALSRLLRR 161

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
               + +  +DEA   +   S G  R   +LL    +         +     +A      
Sbjct: 162 ALDSSDITCSDEALEYLIKSSGGDARSMLKLLEFASNIGTHITLDILKSLRPNA---LSV 218

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
                    D    + + ++  G  +                 D    Y+ +      + 
Sbjct: 219 GSSEAGVHYD--LSSAMIKSIRGSDM-----------------DAAIYYLARLIDGGESA 259

Query: 315 R--GRLLMPIAWQHLGIDIPH 333
               R L+ +A + +G   P 
Sbjct: 260 EFIARRLVILASEDVGNANPQ 280


>gi|237751577|ref|ZP_04582057.1| recombination factor protein RarA [Helicobacter bilis ATCC 43879]
 gi|229372943|gb|EEO23334.1| recombination factor protein RarA [Helicobacter bilis ATCC 43879]
          Length = 402

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 78/329 (23%), Positives = 130/329 (39%), Gaps = 65/329 (19%)

Query: 21  LLRPRTLEEFTGQVEACS---NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA-- 75
             RP TLE F GQ    +    L++ IE     +  L ++LF GPPG GKT+LA ++A  
Sbjct: 7   KFRPTTLENFIGQKHLLAQDAPLRIIIEKNIQDSNMLPNLLFFGPPGSGKTSLAHIIATL 66

Query: 76  -RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
            ++  ++F +T+  + +   +L +L  +  ++ +LFIDE+HRL+I  +E L P +E  Q+
Sbjct: 67  SKKTFLSFNATNFKLDSLKKEL-SLYEHTMNKPLLFIDEVHRLNIAQQEFLLPILEKGQV 125

Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
             +    E P                       L+  L+ R      L   + +D + + 
Sbjct: 126 AFIGASTENPFF--------------------TLSPALRSRS-FLFELKALQTQDFEELY 164

Query: 193 QRGAKLTGLA-VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
            R  K        D     +     G  R    LL    D           +E++ + L 
Sbjct: 165 NRVLKAYPPKHSFDSIKSWLLSHHNGDCRAFLNLLDIALDIDS-------KQEVSVSMLQ 217

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY---MIQQG 308
            L  +  G    +  Y               + ISA +   R + E+    Y   +IQ G
Sbjct: 218 SLVQNAQGVKSQNTHY---------------DYISALIKSIRGSDENAALYYLACLIQTG 262

Query: 309 ----FIQRTPRGRLLMPIAWQHLGIDIPH 333
               FI      R L+ +A + +G   P+
Sbjct: 263 ENPEFI-----ARRLVILASEDIGNANPN 286


>gi|300120988|emb|CBK21370.2| unnamed protein product [Blastocystis hominis]
          Length = 475

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 62/324 (19%), Positives = 116/324 (35%), Gaps = 50/324 (15%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP +  E  G  E  +   V     +   +     +  GP G GKTT+A +++++    
Sbjct: 1   MRPTSFAELQGNEELFAEGSVVRTLLEK--DPPPSFILCGPSGCGKTTVAYIISKQTTCP 58

Query: 82  FRSTS------GPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           F+S S        V +   +   +  + +   +LF+DEIHR S   +++  P +E  +L 
Sbjct: 59  FKSLSCCTSDLKEVRSVLDECDKVFFSTKTPTILFLDEIHRFSKNQQDVFLPYVESGKLV 118

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           L+    E PS   +   LSR  +             L     + +  +    + +     
Sbjct: 119 LIGATTENPSFSIIPALLSRCRVFPL--------QLLSSDALLHVLEHALATDSI----- 165

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL--- 250
              +   ++V D    EI++RS G  R A   L     FA  + +K  +  +  + L   
Sbjct: 166 --LRELQVSVDDALLREISLRSDGDARRALNSLESCVLFASHSPSKHASPSLLRSVLCED 223

Query: 251 -LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
              +  D+ G +                       ISA     R +       ++ +   
Sbjct: 224 KQPIRYDRHGEEH-------------------FNCISALHKSMRGSDVHAALYWLSRMLE 264

Query: 310 IQRTPR--GRLLMPIAWQHLGIDI 331
               P    R L+  A + +G+  
Sbjct: 265 GGEDPLYVARRLIRFATEDVGLAD 288


>gi|319955815|ref|YP_004167078.1| recombination protein mgsa [Nitratifractor salsuginis DSM 16511]
 gi|319418219|gb|ADV45329.1| Recombination protein MgsA [Nitratifractor salsuginis DSM 16511]
          Length = 396

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 75/316 (23%), Positives = 122/316 (38%), Gaps = 49/316 (15%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+TL+E  GQ    +    F +  +   +AL H LF GPPG GKTTL +++A++L   F
Sbjct: 9   RPQTLDEMVGQEHLLAPEAPFRKLVEK--DALPHSLFFGPPGCGKTTLTRILAKKLDRPF 66

Query: 83  RSTSGPVIAKAGDLAALLT---NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
              +   + K  +L  L     N   + ++FIDE+HRLS   +E+L P ME+ Q  L+VG
Sbjct: 67  HEFNATTL-KIDELRQLFKKYANALQKPLVFIDEVHRLSKTQQEVLLPYMEE-QRALIVG 124

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199
                                     LT  ++ R      L   +   ++T+++R  +  
Sbjct: 125 ASTQNPY-----------------YALTAAIRSRS-HLFELKSLDESAMRTMLRRVLERE 166

Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259
            + VT EA   +   S G  R    LL      A +    T+    +       A     
Sbjct: 167 DIEVTPEAETYLIHSSSGDLRAMLGLLE---SGAAIESPVTLETLRSLRPQAIRAGSAEA 223

Query: 260 FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP--RGR 317
               DL   + + ++  G  V                 D    ++ +       P    R
Sbjct: 224 DSHYDLT--SAMIKSIRGSDV-----------------DAGLYWLARLIEGGEPPEFLAR 264

Query: 318 LLMPIAWQHLGIDIPH 333
            L  +A + +G   P+
Sbjct: 265 RLAILAAEDIGNANPN 280


>gi|261883772|ref|ZP_06007811.1| Holliday junction DNA helicase RuvB [Campylobacter fetus subsp.
           venerealis str. Azul-94]
          Length = 99

 Score =  115 bits (289), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 43/98 (43%), Positives = 63/98 (64%)

Query: 218 TPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGG 277
           T R+A RLL+RVRD+A+V     I  E+   AL  L +D  G D +D + +  +   F G
Sbjct: 2   TQRLANRLLKRVRDYAQVHRDGRIKLELTQEALEMLIVDSHGLDNIDHKLMLNMIDRFKG 61

Query: 278 GPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR 315
           GPVG++T++A + E    +ED+ EPY++Q GFIQRTP+
Sbjct: 62  GPVGLDTLAASIGEESATLEDVYEPYLLQIGFIQRTPK 99


>gi|227488807|ref|ZP_03919123.1| crossover junction endodeoxyribonuclease [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227091229|gb|EEI26541.1| crossover junction endodeoxyribonuclease [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 542

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 58/231 (25%), Positives = 92/231 (39%), Gaps = 34/231 (14%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RPR+L+E  GQ    +  K      +   EA   V+  GPPG GKTT+A +++   G N
Sbjct: 1   MRPRSLDEVVGQQHLLAPGKPLRRLIEGDGEA--SVILYGPPGTGKTTIASLISVATG-N 57

Query: 82  FRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                  + +   ++ A++           R VLFIDE+HR S   ++ L  A+E+  + 
Sbjct: 58  RFVGLSALDSGVKEVRAVIDTARKKLIEGTRTVLFIDEVHRFSKTQQDALLAAVENRIVL 117

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           L+    E PS                        N       + ++L     EDLKT+V 
Sbjct: 118 LVAATTENPSFAV---------------------NAPLLSRSLLLQLESLGPEDLKTVVL 156

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           R  +       D    + A+    T  +AG   RR   + E A     + +
Sbjct: 157 RALEDERGFGGDVGITDDALDQLVT--LAGGDARRALTYVEAAAEGARSID 205



 Score = 38.1 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 2/75 (2%)

Query: 260 FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GR 317
            + L+      + R    G    + ISA +   R +  D    Y+ +       PR   R
Sbjct: 335 LETLEETINKAVVRYDRDGDQHYDIISAFIKSVRGSDVDAALHYLARMIEGGEDPRFIAR 394

Query: 318 LLMPIAWQHLGIDIP 332
            L+ +A + +G+  P
Sbjct: 395 RLIILASEDIGMADP 409


>gi|260426534|ref|ZP_05780513.1| recombination factor protein RarA [Citreicella sp. SE45]
 gi|260421026|gb|EEX14277.1| recombination factor protein RarA [Citreicella sp. SE45]
          Length = 432

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 75/337 (22%), Positives = 125/337 (37%), Gaps = 55/337 (16%)

Query: 7   LLSRNVSQEDADIS-LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           L   + S+    ++ LLRP TL++  GQ    +   +     +  A+AL  +L  GPPG+
Sbjct: 3   LFDASPSRRRRPLADLLRPETLDDVIGQKALVAPGSLLRR--RIAADALGSLLLYGPPGI 60

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDV-LFIDEIHRLSIIVEEI 124
           GKT++A+ V + LG  FR      +    D+  +      R V +F+DE+HRLS    + 
Sbjct: 61  GKTSIARAVGQMLGKEFRVLHAAGVR-VSDIRKIADEARIRPVLMFVDEVHRLSSTQADD 119

Query: 125 LYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           L    E+   D +    E P     K  +SR  ++                         
Sbjct: 120 LLTICEEGTADFIGATTENPYHAIPKALISRSQVLKLEPLA------------------- 160

Query: 183 YEIEDLKTIVQRGAKLT-----GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
             IED++ +++RG          + +  E    IA RS G  R A   L  +      A 
Sbjct: 161 --IEDMEEVLRRGMARLASDGIEVEIAPEHLRLIAGRSGGDARKALTALESLAVGHGEAR 218

Query: 238 AKTITREIAD-AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAI 296
            +     I +  A   ++ D+ G    D+                    SA +   R + 
Sbjct: 219 VRITDAMIEEVYAAAPVSFDRSGDRHYDV-------------------TSAFVKSMRGSD 259

Query: 297 EDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
            D    ++         PR   R +M  A + +G+  
Sbjct: 260 PDATLHWLAVLIHAGEDPRYIARRIMIHASEDVGLAD 296


>gi|307243655|ref|ZP_07525796.1| recombination factor protein RarA [Peptostreptococcus stomatis DSM
           17678]
 gi|306492965|gb|EFM64977.1| recombination factor protein RarA [Peptostreptococcus stomatis DSM
           17678]
          Length = 423

 Score =  115 bits (288), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 65/329 (19%), Positives = 121/329 (36%), Gaps = 49/329 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                 RP  +E+  GQ       ++     +       +++F GPPG+GKTT+A+++A 
Sbjct: 2   PLADKYRPTRIEDVVGQKHIIGRGRLLNNMIEKA--YFPNMIFFGPPGVGKTTVAEIIAA 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD-----VLFIDEIHRLSIIVEEILYPAMED 131
                F   +    +   D+  ++ ++ + D     +L+IDEI   +   ++ +   +E+
Sbjct: 60  RADKKFFKINAS-NSSIDDIKRVIASIGNLDAQKGILLYIDEIQSFNKKQQQSILEFIEN 118

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
            Q+ L+    E P     K  LSR  ++   +        L+D            ++ L+
Sbjct: 119 GQISLIASTTENPYHYVYKAILSRSIVMEFKSIS------LEDI-----------VKGLE 161

Query: 190 TIVQRG--AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            IV R   A    L    EA   +A  S G  R A  LL      + +        ++  
Sbjct: 162 NIVGRYREASNLDLVCDMEAYEAMANASGGDMRSAINLLELAISESRLDKDARAKIDMGV 221

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
                      G +      ++        G V    +SA     R +  D    Y+ + 
Sbjct: 222 I---------EGLN------ISTSYNFDTSGDVHYNLLSALQKSIRGSDPDAAIYYLARL 266

Query: 308 ---GFIQRTPRGRLLMPIAWQHLGIDIPH 333
              G +      R L+ IA + +G+  P+
Sbjct: 267 IKGGDLASII--RRLLVIASEDVGMAYPN 293


>gi|241889956|ref|ZP_04777254.1| replication-associated recombination protein A [Gemella haemolysans
           ATCC 10379]
 gi|241863578|gb|EER67962.1| replication-associated recombination protein A [Gemella haemolysans
           ATCC 10379]
          Length = 415

 Score =  115 bits (288), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 65/323 (20%), Positives = 120/323 (37%), Gaps = 43/323 (13%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +  I+ LRP  +++  GQ     + KV  +  +++   +   +  GPPG GKT++A  +A
Sbjct: 2   ETLINKLRPSKIDDIIGQHHLIGDGKVLTKIVESK--KMFSFILYGPPGTGKTSIANALA 59

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
            EL   F+  +  V     DL A++   +   + +L +DE HRL+  +++IL P +E   
Sbjct: 60  NELDYKFKILNA-VNCTKKDLTAVIEESKRFKKVILLLDEFHRLTKPMQDILLPEIEFDN 118

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + ++      P         SR  +                        + Y  E LK I
Sbjct: 119 IYVIGCTTNNPYHTVNPAIRSRLIIFEL---------------QQVSNDDIY--EYLKKI 161

Query: 192 VQRGAKL-TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
                     L + D+    IA+ S G  R +      + + +      T  + +  +  
Sbjct: 162 SNNKEIFPKDLKIEDDVFKTIALNSSGDLRFSLNTFEILYNLSNEGEIITKDKLLNLSLG 221

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
              A DK G    D   ++   ++  G  V        L              +I  G +
Sbjct: 222 KFKAYDKDGDAFYD--IISAFQKSIRGSDVDASLYYLAL--------------LIDSGDL 265

Query: 311 QRTPRGRLLMPIAWQHLGIDIPH 333
                 R +  IA++ +G+  P+
Sbjct: 266 DTIY--RRMSVIAYEDIGLANPN 286


>gi|47220389|emb|CAF98488.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 499

 Score =  115 bits (288), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 41/149 (27%), Positives = 67/149 (44%), Gaps = 19/149 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
               +LRP TLEE+ GQ +       L+  +E+     E +   +  GPPG GKTTLA +
Sbjct: 160 PLADILRPDTLEEYFGQNKVIGQQTLLRSLLES-----EEIPSFILWGPPGCGKTTLAHI 214

Query: 74  VAREL---GVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEE 123
           +A +    G     T     A   D+  ++   +        + VLFIDEIHR +   ++
Sbjct: 215 IAGKCKRKGTARFVTLSATSASVSDVREVIKQAQNELRLCKRKTVLFIDEIHRFNKSQQD 274

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLS 152
              P +E   + +++G      S +  +S
Sbjct: 275 TFLPHVECGTV-ILIGATTENPSFQAQVS 302


>gi|212702534|ref|ZP_03310662.1| hypothetical protein DESPIG_00553 [Desulfovibrio piger ATCC 29098]
 gi|212673975|gb|EEB34458.1| hypothetical protein DESPIG_00553 [Desulfovibrio piger ATCC 29098]
          Length = 408

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 73/318 (22%), Positives = 114/318 (35%), Gaps = 55/318 (17%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
             +RP   + F GQ    S LK  + A     E L  +L  GPPG GK+TLA ++AR   
Sbjct: 9   ERMRPDDPDLFLGQSHLASRLKSLMAA-----ERLPSLLLFGPPGCGKSTLALLLARSRK 63

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137
             +   S P       L  L  +L   ++L +DE+HR S   ++   P +E  +L L+  
Sbjct: 64  RPYLRLSAPEAG----LQHLRRSLNGIEILVLDELHRFSKAQQDFFLPLVESGELTLLAT 119

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
             E PS    +  LSR  ++                             +L  + +RGA+
Sbjct: 120 TTENPSFSVTRQLLSRLHVLRL---------------------RPLGRSELMELARRGAE 158

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257
            TG+ + DE    I   + G  R    L+       E        +       + +  DK
Sbjct: 159 QTGVTLGDEVLDIITAAAHGDARTLLNLVEYAASLPEEMREPEQLKSALPE--VMMRHDK 216

Query: 258 MGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR-- 315
            G    +L                    SA +   R +  D    Y+         PR  
Sbjct: 217 DGDSHYELA-------------------SALIKSIRGSDPDAALYYLACLLEGGEDPRFI 257

Query: 316 GRLLMPIAWQHLGIDIPH 333
            R L+  A + +G+  P+
Sbjct: 258 CRRLILSASEDVGLADPN 275


>gi|156841413|ref|XP_001644080.1| hypothetical protein Kpol_1014p42 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156114714|gb|EDO16222.1| hypothetical protein Kpol_1014p42 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 570

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 68/331 (20%), Positives = 119/331 (35%), Gaps = 39/331 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSN-LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
                LRP+ + ++ GQ    S       +  K     +  ++  GPPG+GKT+LA+++ 
Sbjct: 124 PLSEKLRPQEIRDYVGQQHILSQQNGTLYKYVKE--GTIPSMILWGPPGVGKTSLARLLT 181

Query: 76  RELGVN----FRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEI 124
           +E   N        +    A   +L ++    +        R VLFIDEIHR +   +++
Sbjct: 182 KEATKNGTNYHLIETSATKANTQELRSIFDKAKKDFQLTKRRIVLFIDEIHRFNKAQQDL 241

Query: 125 LYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           L P +E+  + L+    E PS +     +SR  +             +  R GI +    
Sbjct: 242 LLPHVENGDIILIGATTENPSFQLNNALISRCHIFVLEKLSSNEICIVLSR-GIALLNKC 300

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            ++     I         L +       IA  S G  R A  +L  +         +  +
Sbjct: 301 RKLIWKVKI--------PLTLPRSVLEYIADVSVGDTRRAINILEMIEISTRQITTEITS 352

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             + +  +++    K G +     Y      N        +TISA     R    D    
Sbjct: 353 DTVKE--IVKSNSSKEGINT----YYDTSGDNH------YDTISALHKAIRGGDADSSLY 400

Query: 303 YMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
           YM +       P    R  + IA + +G+  
Sbjct: 401 YMTRMLQGGEDPLYIARRFIRIASEDVGLAD 431


>gi|227903996|ref|ZP_04021801.1| crossover junction endodeoxyribonuclease ATPase [Lactobacillus
           acidophilus ATCC 4796]
 gi|227868387|gb|EEJ75808.1| crossover junction endodeoxyribonuclease ATPase [Lactobacillus
           acidophilus ATCC 4796]
          Length = 478

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 64/320 (20%), Positives = 114/320 (35%), Gaps = 40/320 (12%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           +     L+RP+TL E  GQ    +  K   +  K     L  +L  GPPG GKTTLA V+
Sbjct: 53  KQPLADLMRPKTLGEMVGQNHLLAKGKPLYQIIKEH--ILLSLLLWGPPGCGKTTLAYVM 110

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           ++ L + F   +  +  K+     +  + ++  VL +DEIHRL+  +++ L P +E+  +
Sbjct: 111 SQTLRLPFEKFNASIQNKSQLQKLIQKHPDESFVLLLDEIHRLTKPIQDYLLPYLENGHV 170

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
            L+VG       + I                    ++ R  I         +    +++ 
Sbjct: 171 -LLVGTTTENPIMSIQ-----------------PAIRSRCQIFEFYPIKAEDIELVLIKA 212

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
             +     +  + A  IA    G  R++  +L  +        +     E A       A
Sbjct: 213 AEEHLNFDLPKKQAHAIANSGNGDVRVSLNILDTLNAMHPQNISMANIEEFARN--QHFA 270

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
            DK      D  YL+    +  G           +      +E ++              
Sbjct: 271 FDKDATKHYD--YLSAFQDSIEGSDADAALYYLAVILKSGDLESVV-------------- 314

Query: 315 RGRLLMPIAWQHLGIDIPHR 334
             R L  +A   +G+    R
Sbjct: 315 --RRLKDLAALDVGLADSAR 332


>gi|118086471|ref|XP_001232269.1| PREDICTED: similar to Werner helicase interacting protein 1 isoform
           1 [Gallus gallus]
          Length = 537

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 61/341 (17%), Positives = 109/341 (31%), Gaps = 57/341 (16%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           +       LRP TL ++ GQ         L+  +E+       +  ++  GPPG GKTTL
Sbjct: 119 EGQPLADRLRPDTLRDYVGQERVLGAHTLLRSLLES-----HEIPSLILWGPPGCGKTTL 173

Query: 71  AQVVARELGVN--FRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIV 121
           A ++A           T     AK  D+  +++  +        + +LFIDEIHR +   
Sbjct: 174 AHIIANSSKKKGMRFVTLSATSAKTNDVRDVISQAQNEKRLFKRKTILFIDEIHRFNKSQ 233

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR----FGIP 177
           +                            LSR  +I            +  R     G+ 
Sbjct: 234 Q-----------------------VNAALLSRCRVIVLEKLSVEAMEAILLRAVKSLGVQ 270

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
           +     +     T   + +    + + ++A   +A    G  R     L+        A 
Sbjct: 271 VLGQGNQHSSSATGSSKESSELPVYIEEKALSTLAYLCDGDARTGLNGLQLAVQARLAAG 330

Query: 238 AKT----ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
             T          +  L+     K G  +  + Y      ++         ISA     R
Sbjct: 331 KTTLLSFTEGCSVNGVLITEEHVKEGLQRSHILYDRAGEEHYNC-------ISALHKSMR 383

Query: 294 DAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
            + E+    ++ +       P    R L+  A + +G+  P
Sbjct: 384 GSDENASLYWLARMLEGGEDPLYVARRLVRFASEDIGLADP 424


>gi|307208004|gb|EFN85563.1| ATPase WRNIP1 [Harpegnathos saltator]
          Length = 505

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 52/342 (15%), Positives = 107/342 (31%), Gaps = 44/342 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA- 75
           +    +RP ++  + GQ +      V     + R   +  ++F GPPG GKT+L  V+  
Sbjct: 79  SLAEKMRPMSIANYIGQKQIIGPGTVLRRLLEKRE--IPSMIFWGPPGCGKTSLTNVIEC 136

Query: 76  ----RELGVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEIL 125
                              +   ++   +T  +++       V+ +D+IH  + + ++I 
Sbjct: 137 LSKETTGNNIHIVRLSAANSGVKNVRDAVTTAQNKSKFGYKTVVIMDKIHCFNKLQQDIF 196

Query: 126 YPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAA-TTRVGLLTNPLQDRFGIPIRLNF 182
            P +E   + L+    E PS       LSR  +          +   L    G      F
Sbjct: 197 LPHVEAGTITLIGCTTENPSYSLNPALLSRCRVFMLYKLMESNIKEILHKAIGYINENVF 256

Query: 183 ---------YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                    + +       +       L    EA    A  +  T  +A       +   
Sbjct: 257 DTGGENHRDHTMFYPTLNSKFHIDKETLQWLSEACDGDAHVALNTLELAVLAKEPDKLRT 316

Query: 234 EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
              +   IT +     L++  +             + + ++   G V             
Sbjct: 317 SCNNDFKITVKDVRKYLIQTHLLSDEESSQSHHIYSALHKSIRAGKV------------- 363

Query: 294 DAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
               +    +M +    +  P    R L+ I+ + +G+  P 
Sbjct: 364 ----NASLYWMARIMAAKEDPVNIARRLVRISSEDIGLADPD 401


>gi|167385811|ref|XP_001737497.1| ATPase WRNIP1 [Entamoeba dispar SAW760]
 gi|165899652|gb|EDR26196.1| ATPase WRNIP1, putative [Entamoeba dispar SAW760]
          Length = 482

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 61/346 (17%), Positives = 117/346 (33%), Gaps = 39/346 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                 RP+ LE+  GQ  A      F        ++L   +  GPPG GKTT+A+++  
Sbjct: 30  PLAERQRPKRLEDIIGQESAIGIGTPFNSMIL--NDSLQSTILFGPPGSGKTTIARIIKN 87

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAM 129
                F   S    +K  +L  ++   ++R        +LF+DEIH L+ + ++I  PA+
Sbjct: 88  MSNSFFVQISSVTTSK-EELKNVIEQAKERKKREKKDTILFVDEIHTLNKLQQDIFLPAI 146

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAAT---------------TRVGLLTNPLQD 172
           E+  + L+    E PS +     +SR  L+                           + D
Sbjct: 147 ENGSIILIGATTENPSFQLNNALMSRCNLVILKRLENESINKIIKKAIKEEYQNNKFIID 206

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLA---VTDEAACEIAMRSRGTPRIAGRLLRRV 229
             GI I   + + +      + G              +  E+    +        ++   
Sbjct: 207 EAGINIISKYADGD-----ARNGLNCLEFIFNYFNHLSEEELKEIIKSNESENNTIIIDE 261

Query: 230 RDFAEVAHAKTITREIADAALLRLAIDKMGFDQ--LDLRYLTMIARNFGGGPVGIETISA 287
            D       +    E++   +    +  +      +         +    G     TISA
Sbjct: 262 NDCTISKKNELENTELSYQTIEEPEVIHITLTSEIISKFLQKQNFQYDKSGEDHYNTISA 321

Query: 288 GLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
                R   E+    ++ +  F    P+   R ++  A + +G+  
Sbjct: 322 FHKSMRGGDENAAVYWLGRMIFSGENPKYVARRMIRFATEDIGLAD 367


>gi|164662339|ref|XP_001732291.1| hypothetical protein MGL_0066 [Malassezia globosa CBS 7966]
 gi|159106194|gb|EDP45077.1| hypothetical protein MGL_0066 [Malassezia globosa CBS 7966]
          Length = 446

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 65/325 (20%), Positives = 108/325 (33%), Gaps = 54/325 (16%)

Query: 20  SLLRPRTLEEFTGQVEAC-SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE- 77
             +RP+TL+E+ GQ +    +L+  +         +  ++  GPPG GKTTLA+++ RE 
Sbjct: 60  ERMRPQTLDEYVGQDDVVNGSLRALL-----HKGHIPSMVLWGPPGSGKTTLARLLTREA 114

Query: 78  -----LGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEIL 125
                             A A D+  ++            R VLFIDEI R +   +++ 
Sbjct: 115 ITTTNHTPFRFVELSATTATANDVKRIVEEAVNRQMLTTQRTVLFIDEIQRFNRAQQDLF 174

Query: 126 YPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
            P +E   + L+    E PS R     LSR  ++  T                       
Sbjct: 175 LPMLERGLITLLAATTENPSFRLQGALLSRLRVVVLTKLS-------------------- 214

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
             E     + R A        D+     +        I   LL+ +   A          
Sbjct: 215 --ECDCLHILRNALARVRTGEDDVFDAASY-----EWIDDSLLQWMAQMA----DGDARA 263

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
            +    L  +  D    ++L         +    G    +TISA     R +  D    +
Sbjct: 264 ALQALELALVRDDGADRERLKASLRRTALKYDRAGDAHYDTISALHKSIRGSNPDAALYW 323

Query: 304 MIQQGFIQRTPR--GRLLMPIAWQH 326
           + +       P    R L+  A + 
Sbjct: 324 LARMVAGGDDPLFIARRLIVCASED 348


>gi|307189842|gb|EFN74107.1| ATPase WRNIP1 [Camponotus floridanus]
          Length = 400

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 52/335 (15%), Positives = 109/335 (32%), Gaps = 47/335 (14%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR-----EL 78
           P  +  + GQ        +   +       +  ++F GPPG GKT+L +++A        
Sbjct: 3   PANIAAYIGQEHIIGPGTIL--SYLLEKGEIPSMIFWGPPGCGKTSLTKIIACLSNKITS 60

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDF 132
                     V +   ++   +T  +++       ++F+DEIH  + + ++I  P +E  
Sbjct: 61  NNVHIVNLSAVSSGVKNIRDAVTTAKNKSKFGCKTIVFMDEIHCFNKLQQDIFLPHVEAG 120

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAAT-----TRVGLLTNPLQDRFGIPIRLNFYEI 185
              L+    E PS       LSR  +             +L   ++   G        E 
Sbjct: 121 TFTLIGCTTENPSYSLNPALLSRCRVFVLKKLTECNIKEILHKAIEYMNGSIFDAQ--ER 178

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT----- 240
            ++   +   +      + ++A   +A    G  R+A   L            KT     
Sbjct: 179 SEMNKELNFHSN-LKFCINNDAIQWLAEACDGDARVALNTLELAVLTKTTNRFKTSCNND 237

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I  +    +L++  I             + + ++   G                   +  
Sbjct: 238 IILKDIKESLIKAHILSEKETNQSYHLYSALHKSIRAGKA-----------------NAS 280

Query: 301 EPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
             +M +    +  P    R L+ I+ + +G+  P 
Sbjct: 281 LYWMARIMAAKEDPVNIARRLVRISSEDIGLADPD 315


>gi|169350636|ref|ZP_02867574.1| hypothetical protein CLOSPI_01408 [Clostridium spiroforme DSM 1552]
 gi|169292690|gb|EDS74823.1| hypothetical protein CLOSPI_01408 [Clostridium spiroforme DSM 1552]
          Length = 420

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 59/326 (18%), Positives = 106/326 (32%), Gaps = 56/326 (17%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
            S +RP+ L +  GQ        +  +  + +      ++  G PG GKTT+A  +A +L
Sbjct: 6   ASRMRPKNLCDVIGQQHLVGENSILTKIVEKKH--PFSIILYGNPGCGKTTIANALANDL 63

Query: 79  GVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
            +  R  +     K   D+      L +   + IDEIHRL+   ++ L   ME+  L + 
Sbjct: 64  NIPCRFFNASTGNKKEMDIIIEEAKLCNGLFIIIDEIHRLNKARQDDLLSYMENGLLIVA 123

Query: 138 --VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
                 P         SR  ++   +                       + ++   ++R 
Sbjct: 124 GCTTSNPFHSINPAIRSRCHILEVKS---------------------LTVNEIIVGLKRA 162

Query: 196 AKLT-----GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           A           V DE   +IA    G  R     L       +  H             
Sbjct: 163 ASSLNGLNNQYIVDDEVFAKIAKSCNGDIRYGYNCLEICSIVCKDNH------------- 209

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY---MIQQ 307
                  +  D L    +T             +T+S      R +  +    Y   +I+ 
Sbjct: 210 -------ITLDDLKRSSITTNITYDKNEDNYYDTLSGLQKSIRGSDPNGAMYYFAKLIKA 262

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
             I+     R L+  A++ +G+  P+
Sbjct: 263 NDIE--SLERRLITTAYEDIGLANPN 286


>gi|215500541|gb|EEC10035.1| werner helicase interacting protein, putative [Ixodes scapularis]
          Length = 400

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 62/327 (18%), Positives = 116/327 (35%), Gaps = 40/327 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
               L+RP  LE F GQ        +  +     + ++  ++  GPPG GKTTLA ++++
Sbjct: 1   PLAELMRPSQLEAFVGQDGTLGEKSMLRKLI--ASNSVPSMILWGPPGCGKTTLAHIISQ 58

Query: 77  ELGVN---FRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILY 126
           +   +      T     +   D+   L          + + VLFIDEIHR + + + +  
Sbjct: 59  KCKESSEAHFVTLSATSSGVKDVKDTLERARNDQRMFKRKTVLFIDEIHRFNKLQQLVGL 118

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
                  + L+  + P   ++K  + R + + A    G +TN L          +F  ++
Sbjct: 119 CNRASPIVSLLTNDRPGVLTLKQAMRRKSGL-AQAHAGSVTNQLDSLHAFYSCKSFSPVQ 177

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH-AKTITREI 245
               +         + + +EA   +     G  R A   L+   +    +     +T+  
Sbjct: 178 YCFPVHLFS---RPVLMEEEALDYLTGMCDGDARTALNALQTAVEAHRSSGQDGCLTKAH 234

Query: 246 ADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
               L +     D+ G                        TISA +   R + ++    Y
Sbjct: 235 VKEGLHKTHFLYDRAGDQHY-------------------NTISAFIKSMRGSDQNAALYY 275

Query: 304 MIQQGFIQRTPR--GRLLMPIAWQHLG 328
           +         PR   R L+  A + +G
Sbjct: 276 LACMLTGGEDPRFIARRLVIFASEDIG 302


>gi|310815956|ref|YP_003963920.1| AAA ATPase [Ketogulonicigenium vulgare Y25]
 gi|308754691|gb|ADO42620.1| AAA ATPase [Ketogulonicigenium vulgare Y25]
          Length = 434

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 70/341 (20%), Positives = 121/341 (35%), Gaps = 55/341 (16%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D     S          ++LRP +L++  GQ E      +     +  A AL  V+  
Sbjct: 1   MSDLFD--SGARHSRAPLAAILRPTSLDDVIGQDEITRAGSILRR--RIAAGALGSVILY 56

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRD-VLFIDEIHRLSI 119
           GPPG+GKT++A+ V   LG +FR  +    A   D+  L         ++F+DE+ R S 
Sbjct: 57  GPPGVGKTSIARAVGAMLGKSFRPLNA-TRAGVSDIRKLADEARMTPLLIFVDEVQRFSA 115

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
              + L    E+  +D M      P        +SR T++                    
Sbjct: 116 TQTDDLLAICEEGLVDFMGATTGNPYHVLTPALVSRSTILKL------------------ 157

Query: 178 IRLNFYEIEDLKTIVQRGAKLT-----GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
                 ++  ++ +++RG +        +A++D     IA R+ G  R A  +L  +   
Sbjct: 158 ---EPLDLTAMEQVLRRGLQHLAAGGTEVAISDPHLRMIAGRAGGDARRALTVLESLSVG 214

Query: 233 AEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEP 292
                  T        A   +  D+ G    D+                   ISA +   
Sbjct: 215 HSGTVQITDAMLDEVFAAAPVNHDRTGDAHYDI-------------------ISAFIKSM 255

Query: 293 RDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
           R +  D    ++ +       PR   R +M  A + +G+  
Sbjct: 256 RGSDPDATLYWLARLIHGGEDPRFIARRMMIHASEDVGLAD 296


>gi|145243766|ref|XP_001394395.1| werner helicase interacting protein [Aspergillus niger CBS 513.88]
 gi|134079076|emb|CAK48385.1| unnamed protein product [Aspergillus niger]
          Length = 513

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 69/330 (20%), Positives = 117/330 (35%), Gaps = 64/330 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
                +RPR  ++  GQ         L+  IE      + L +++  GPPG GKTT+A++
Sbjct: 105 PLAEQVRPRCFDDIVGQKSLIGPNGTLRRLIE-----QDELPNLILWGPPGSGKTTIARI 159

Query: 74  VARELGVNFRSTSG--PVIAKAGDLAALLTNLED-RDVLFIDEIHRLSIIVEEILYPAME 130
           +   +       S    +  +  D+    T+    + ++F DEIHRL+   ++I   AM 
Sbjct: 160 IGPMMRRKVYEISSLTTITTEYRDIVTKATHDGRNKSIIFCDEIHRLTRPQQDIFLDAMR 219

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
             ++ L+    E PS       + +        RV  +  P                 DL
Sbjct: 220 RNKITLIGATTENPSLNIHHTLVYKC-------RVFTVAKP--------------TTTDL 258

Query: 189 KTIVQRGAK-----LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            TI++R         +   + DE    IA  + G  R A  +L    D         +T+
Sbjct: 259 ATILRRSLISQTHLKSSPLLDDEFLQYIAGFADGDSRTALNVLEIATDLCR---RPNMTK 315

Query: 244 EIADAALLRL-AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           E    +L +    D+ G    D                   TISA     R +  D    
Sbjct: 316 EKLKYSLTKSLLYDRSGDQHYD-------------------TISALHKSIRGSDPDAALY 356

Query: 303 YMIQQGFIQRTPR--GRLLMPIAWQHLGID 330
           Y+++       P    R L+    + +G+ 
Sbjct: 357 YLVRMLQSGENPLFIARRLIVATSEDIGLA 386


>gi|242310186|ref|ZP_04809341.1| recombination factor protein RarA [Helicobacter pullorum MIT
           98-5489]
 gi|239523483|gb|EEQ63349.1| recombination factor protein RarA [Helicobacter pullorum MIT
           98-5489]
          Length = 388

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 73/320 (22%), Positives = 123/320 (38%), Gaps = 63/320 (19%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  ++F GQ         F++  K  +  + H  F GPPG GKTT A ++A ELG  F
Sbjct: 9   RPKNFQQFIGQKHIFGENAPFMQLLK--SGKIPHSFFFGPPGSGKTTAATLIANELGYPF 66

Query: 83  RSTSGPVIAKAGDLAALLTNLE---DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137
            + +     K+ DL  +L N +    + ++FIDE+HRL+   +E+L P ME+ Q  ++  
Sbjct: 67  YNLNATSF-KSEDLRNILKNHQNTLQKPLIFIDEVHRLNKAQQELLLPIMENHQALILGA 125

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
             E P                       LTN ++ R       +  + E+LK I++    
Sbjct: 126 STENPFF--------------------ALTNAIRSRS-FVFEFHLLKQEELKEILK---- 160

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257
                + DE    +   S G  R    LL             +  + ++   L       
Sbjct: 161 --EYDLKDEIREFLISTSGGDARAMLNLLDCAL---------SSNKPLSIELLKNFRTHS 209

Query: 258 M--GFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR 315
           +  G +  +  Y                 ISA +   R + E+    Y+ +       P 
Sbjct: 210 LNSGTNDSNTHY---------------NLISAMIKSIRGSDENAAIYYLARLIEGGENPE 254

Query: 316 --GRLLMPIAWQHLGIDIPH 333
              R L+ +A + +G   P+
Sbjct: 255 FIARRLVILASEDIGNANPN 274


>gi|328779626|ref|XP_393943.4| PREDICTED: ATPase WRNIP1-like [Apis mellifera]
          Length = 426

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 50/336 (14%), Positives = 115/336 (34%), Gaps = 48/336 (14%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR----- 76
           +RP    ++ GQ +   +  +  +        +  ++F GPPG GKT+L  ++++     
Sbjct: 1   MRPACFHDYIGQEKVVGSNTILQQLLTKGH--IPSMIFWGPPGCGKTSLTNIISKISKEM 58

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE-----DRDVLFIDEIHRLSIIVEEILYPAMED 131
                         +   ++  ++   +     ++ ++ +D+IHR + + ++I  P +E 
Sbjct: 59  HGEKVNIINLSATSSGVSNIKNIINKTKTESKFNQIIVIMDKIHRFNKLQQDIFLPHVET 118

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAA-----TTRVGLLTNPLQDRFGIPIRLNFYE 184
               L+    E PS       LSR  + A         V +L   +    G       + 
Sbjct: 119 GTFTLIGTTTENPSYSLNSALLSRCRIFALNKLTMLNIVEILCKAISSINGEIYN---FS 175

Query: 185 IEDLKTIVQRGAKLTGLA---VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK-- 239
           +++L T ++     +      +   A   +A    G  R+A   L               
Sbjct: 176 LKNLSTNLENNLNFSSKPHFFINKTAIDWLAEVCDGDARVALNDLELAIKIKISNKLNSN 235

Query: 240 --TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
             +IT E    ++ +  +             + + ++   G                  E
Sbjct: 236 FVSITLEDVKESVKQTHMLSDKQSNNIQHLYSALHKSIKAGK-----------------E 278

Query: 298 DLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
           +    ++ +   I+  P    R L+ I+ + +G+  
Sbjct: 279 NASLYWLARIMDIKEDPVDIARRLIRISSEDVGLAD 314


>gi|58337368|ref|YP_193953.1| recombination factor protein RarA [Lactobacillus acidophilus NCFM]
 gi|58254685|gb|AAV42922.1| chromosome segregation helicase [Lactobacillus acidophilus NCFM]
          Length = 429

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 64/320 (20%), Positives = 114/320 (35%), Gaps = 40/320 (12%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           +     L+RP+TL E  GQ    +  K   +  K     L  +L  GPPG GKTTLA V+
Sbjct: 4   KQPLADLMRPKTLGEMVGQNHLLAKGKPLYQIIKEH--ILLSLLLWGPPGCGKTTLAYVM 61

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           ++ L + F   +  +  K+     +  + ++  VL +DEIHRL+  +++ L P +E+  +
Sbjct: 62  SQTLRLPFEKFNASIQNKSQLQKLIQKHPDESFVLLLDEIHRLTKPIQDYLLPYLENGHV 121

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
            L+VG       + I                    ++ R  I         +    +++ 
Sbjct: 122 -LLVGTTTENPIMSIQ-----------------PAIRSRCQIFEFYPIKAEDIELVLIKA 163

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
             +     +  + A  IA    G  R++  +L  +        +     E A       A
Sbjct: 164 AEEHLNFDLPKKQAHAIANSGNGDVRVSLNILDTLNAMHPQNISMANIEEFARN--QHFA 221

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
            DK      D  YL+    +  G           +      +E ++              
Sbjct: 222 FDKDATKHYD--YLSAFQDSIEGSDADAALYYLAVILKSGDLESVV-------------- 265

Query: 315 RGRLLMPIAWQHLGIDIPHR 334
             R L  +A   +G+    R
Sbjct: 266 --RRLKDLAALDVGLADSAR 283


>gi|313681270|ref|YP_004059008.1| recombination protein mgsa [Sulfuricurvum kujiense DSM 16994]
 gi|313154130|gb|ADR32808.1| Recombination protein MgsA [Sulfuricurvum kujiense DSM 16994]
          Length = 392

 Score =  114 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 61/264 (23%), Positives = 100/264 (37%), Gaps = 21/264 (7%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           LLRP+  ++  GQ   CS         +     L H  F GPPG GKTTLA+++A  +G+
Sbjct: 7   LLRPKKFDDVVGQPHLCSPDSPLRSLCENGN--LTHSFFYGPPGCGKTTLARIIAEVMGL 64

Query: 81  NFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
            F   +   + K   L  +    E+   + ++FIDE+HRL+   +E+L P ME   + ++
Sbjct: 65  PFYEFNATSL-KIEQLRKIFDQYENSLTKPLIFIDEVHRLAKNQQEVLLPVMEKNSVLVI 123

Query: 138 --VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
               E P         SR  L    +      + L  R  I +     + E  + ++   
Sbjct: 124 GASTENPYFSLTAAMRSRSLLFELYSITHEALDDLLVRTAIEM-----DEEAREYLIASS 178

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255
                              +   P I   LL+ +R  A+   +        D A   +  
Sbjct: 179 GG----DARAMLKLLEVSCALNKP-ITLGLLKSLRPAAQSLGSSEAGVHY-DLASALIKS 232

Query: 256 DKMGFDQLDLRYLTMIARNFGGGP 279
            +       + YL  +    GG P
Sbjct: 233 IRGSDPDAAIYYLARLIE--GGEP 254


>gi|148272987|ref|YP_001222548.1| recombination factor protein RarA [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147830917|emb|CAN01861.1| putative ATPase [Clavibacter michiganensis subsp. michiganensis
           NCPPB 382]
          Length = 473

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 77/347 (22%), Positives = 113/347 (32%), Gaps = 56/347 (16%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIE-AAKARAEALD-HVLFVGPPGLGKTTLAQVVAREL 78
            +RPR L+E TGQ    +     +  A+    E     ++  GPPG GKTTLAQ +A   
Sbjct: 18  RMRPRGLDEVTGQRHLLTPGSPLVSLASDVAGEQGSVSIILWGPPGTGKTTLAQAIAHGS 77

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAMED 131
              F   S  V A   D+  ++              VLF+DEIHR +   ++ L P +E+
Sbjct: 78  SRRFVELSA-VTAGVRDVRQVMEKALSDRDLFGVSTVLFLDEIHRFTKAQQDALLPGVEN 136

Query: 132 FQLDLM--VGEGPSARSVKI-----------NLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
             + L+    E PS   +              L    L     R  +    L  RF +  
Sbjct: 137 GWVILIAATTENPSFSVISPLLSRSLLLTLEQLDDDDLGVLVDRAVVDDRGLGGRFALAD 196

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDE----------AACEIAMRSRGTPRIAGRLLRR 228
                 I       +R       A              AA              G     
Sbjct: 197 DARAMIIRLASGDARRALTALEAAAVSAQADASGKARAAADGQEAVDEDDDDQDGVDPEP 256

Query: 229 VRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAG 288
             D A V  +        D ALLR   D+ G +  D+                   ISA 
Sbjct: 257 AEDPAPVPISTEQVAVAVDRALLR--YDRNGDEHYDV-------------------ISAF 295

Query: 289 LSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +   R +  D    Y+ +       PR   R ++  A + +G+  P 
Sbjct: 296 IKSIRGSDVDAALHYLARMIEAGEDPRFIARRIIVSASEDIGLADPQ 342


>gi|317495439|ref|ZP_07953808.1| ATPase [Gemella moribillum M424]
 gi|316914498|gb|EFV35975.1| ATPase [Gemella moribillum M424]
          Length = 415

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 61/322 (18%), Positives = 124/322 (38%), Gaps = 47/322 (14%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           I+ LRP+ + +  GQ       KV  +  +++   +   +  GPPG GKT++A  +A EL
Sbjct: 5   INELRPKKITDIIGQQHLIGKNKVLTKIVESK--KMFSFILYGPPGTGKTSIANALANEL 62

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
              F+  +  V     DL  ++   +   + +L +DE HRL+  +++IL P +E   +  
Sbjct: 63  DYKFKILNA-VNCSKKDLTTVIEESKRFKKVLLLLDEFHRLTKPMQDILLPEIEYDNI-Y 120

Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA 196
           ++G   +     +N                   ++ R  I         +D+   +++ A
Sbjct: 121 VIGCTTNNPYHTVN-----------------PAIRSRLMIFELKQI-NEDDIYNYLKKIA 162

Query: 197 KLTGL-----AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           K   +     ++ D+    IA+ S G  R +      + + +      T  + ++ +   
Sbjct: 163 KNNDIFSKNLSIDDDVFKAIALNSSGDLRYSLNTFEILYNLSNKNEHITKEKLLSLSLEK 222

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
               DK G    D   ++   ++  G  V        L              +I  G + 
Sbjct: 223 FKNYDKDGDAFYD--IISAFQKSIRGSDVDASLYYLAL--------------LIDSGDLD 266

Query: 312 RTPRGRLLMPIAWQHLGIDIPH 333
                R +  IA++ +G+  P+
Sbjct: 267 TIY--RRMTVIAYEDIGLANPN 286


>gi|109947662|ref|YP_664890.1| recombination factor protein RarA [Helicobacter acinonychis str.
           Sheeba]
 gi|109714883|emb|CAJ99891.1| conserved hypothetical helicase-like protein [Helicobacter
           acinonychis str. Sheeba]
          Length = 393

 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 71/319 (22%), Positives = 112/319 (35%), Gaps = 49/319 (15%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           SLL P+ LE+F GQ           +A +++     H  F GPPG+GKT+LAQ++A  L 
Sbjct: 5   SLLNPKRLEDFLGQEHLIGKDTPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIAHSLE 62

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
               S +     K  DL   L N +    + ++FIDE HRL+   +E L P ME     L
Sbjct: 63  RPILSFNATDF-KLDDLRLKLKNYQHALLKPIVFIDETHRLNKTQQEFLLPIMEKDH-AL 120

Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA 196
           ++G      +                   L++ ++ R  I   L      DL  +  +  
Sbjct: 121 ILGASTQDPN-----------------YSLSHAIRSRSFI-FELTPLNESDLDKLCSKAL 162

Query: 197 KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAID 256
            L    +   A   +   S G  R    LL              IT E   +       D
Sbjct: 163 TLLNKQIEPSAKTYLLNNSTGDARALLNLLDL-----SAKIEDPITLETLKSLRPHSLND 217

Query: 257 KMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR- 315
               D       + + ++  G                 + E+    Y+ +       P  
Sbjct: 218 GSYSDDTHYNLTSALIKSLRG-----------------SDENASLYYLARLIAGGENPEF 260

Query: 316 -GRLLMPIAWQHLGIDIPH 333
             R L+  A + +G   P+
Sbjct: 261 IARRLVIFASEDIGNANPN 279


>gi|170781157|ref|YP_001709489.1| recombination factor protein RarA [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169155725|emb|CAQ00846.1| putative ATPase [Clavibacter michiganensis subsp. sepedonicus]
          Length = 486

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 72/339 (21%), Positives = 112/339 (33%), Gaps = 27/339 (7%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIE-AAKARAEALD-HVLFVGPPGLGKTTLAQVVAREL 78
            +RPR+L+E TGQ    +     +  A+    E     ++  GPPG GKTTLAQ +A   
Sbjct: 18  RMRPRSLDEVTGQRHLLTPGSPLVSLASDVAGEQGSVSIILWGPPGTGKTTLAQAIAHGS 77

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAMED 131
              F   S  V A   D+  ++              VLF+DEIHR +   ++ L P +E+
Sbjct: 78  SRRFVELSA-VTAGVRDVRQVMEKALSDRDLFGVSTVLFLDEIHRFTKAQQDALLPGVEN 136

Query: 132 FQLDLM--VGEGPSARSVKI-----------NLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
             + L+    E PS   +              L    L     R       L  RF +  
Sbjct: 137 GWVILIAATTENPSFSVISPLLSRSLLLTLEQLDDDDLGVLVDRAVADARGLGGRFALED 196

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACE--IAMRSRGTPRIAGRLLRRVRDFAEVA 236
                 I       +R       A     A     A  +               D  E  
Sbjct: 197 DARAMIIRLASGDARRALTALEAAAVSAQADASGRARAAAEGQEPDEDDDDDGEDDDEDD 256

Query: 237 HAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAI 296
             +      A+          +  +Q+ L     + R    G    + ISA +   R + 
Sbjct: 257 EREDADAAAAEDPASIPIPIPISTEQVALAVDRALLRYDRNGDEHYDVISAFIKSIRGSD 316

Query: 297 EDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            D    Y+ +       PR   R ++  A + +G+  P 
Sbjct: 317 VDAALHYLARMIEAGEDPRFIARRIIVSASEDIGLADPE 355


>gi|329767245|ref|ZP_08258772.1| hypothetical protein HMPREF0428_00469 [Gemella haemolysans M341]
 gi|328836912|gb|EGF86559.1| hypothetical protein HMPREF0428_00469 [Gemella haemolysans M341]
          Length = 415

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 65/323 (20%), Positives = 119/323 (36%), Gaps = 43/323 (13%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +  I+ LRP  + +  GQ     + KV  +  +++   +   +  GPPG GKT++A  +A
Sbjct: 2   ETLINKLRPNKISDIIGQHHLIGDGKVLTKIVESK--KMFSFILYGPPGTGKTSIANALA 59

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
            EL   F+  +  V     DL A++   +   + +L +DE HRL+  +++IL P +E   
Sbjct: 60  NELDYKFKILNA-VNCTKKDLTAVIEESKRFKKVILLLDEFHRLTKPMQDILLPEIEFDN 118

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           + ++      P         SR  +                        + Y  E LK I
Sbjct: 119 IYVIGCTTNNPYHTVNPAIRSRLIIFEL---------------QQVSNDDIY--EYLKKI 161

Query: 192 VQRGAKL-TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
                     L + D+    IA+ S G  R +      + + +      T  + +  +  
Sbjct: 162 SNNKEIFPKELNIEDDVFKTIALNSSGDLRFSLNTFEILYNLSNEGEIITKEKLLNLSLG 221

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
              A DK G    D   ++   ++  G  V        L              +I  G +
Sbjct: 222 KFKAYDKDGDAFYD--IISAFQKSIRGSDVDASLYYLAL--------------LIDSGDL 265

Query: 311 QRTPRGRLLMPIAWQHLGIDIPH 333
                 R +  IA++ +G+  P+
Sbjct: 266 DTIY--RRMSVIAYEDIGLANPN 286


>gi|268678708|ref|YP_003303139.1| ATPase AAA [Sulfurospirillum deleyianum DSM 6946]
 gi|268616739|gb|ACZ11104.1| AAA ATPase central domain protein [Sulfurospirillum deleyianum DSM
           6946]
          Length = 396

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 68/316 (21%), Positives = 128/316 (40%), Gaps = 49/316 (15%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+ +EE +GQ         F +  K  + ++ H LF GP G+GKTTLA++VA  L + F
Sbjct: 10  RPKVIEELSGQKHLSGENSPFRKLLK--SGSMSHALFFGPAGVGKTTLARIVANTLQLPF 67

Query: 83  RSTSGPVIAKAGDLAALLTNLE---DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
                  I K  ++  +L+       + ++FIDEIHRLS   +E+L   ME+ +  +++G
Sbjct: 68  YELDATSI-KVEEIRKILSQHRGALQKPLIFIDEIHRLSKTQQEVLLLPMENHE-AIVIG 125

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199
                                    +L++ ++ R  +       E++D++ I++R  +  
Sbjct: 126 ASTENPYF-----------------VLSSGIRSRM-MLFEFYPLEMKDMEAILERVHEKI 167

Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259
              + +EA   +   S G  R    LL       ++       + +  +AL     D + 
Sbjct: 168 EFQIDEEAREYLIRSSAGDSRSFLNLLEFALKV-DLHVNMQTLKALRPSALK----DGVS 222

Query: 260 FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GR 317
            D      ++ + ++  G  V                 D    Y+ +      +P    R
Sbjct: 223 SDNTHYNLISAMIKSVRGSDV-----------------DAALYYLARLIDGGESPDFIAR 265

Query: 318 LLMPIAWQHLGIDIPH 333
            L+ +A + +G   P+
Sbjct: 266 RLVILASEDIGNANPN 281


>gi|259502971|ref|ZP_05745873.1| AAA family ATPase [Lactobacillus antri DSM 16041]
 gi|259169096|gb|EEW53591.1| AAA family ATPase [Lactobacillus antri DSM 16041]
          Length = 433

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 66/321 (20%), Positives = 115/321 (35%), Gaps = 42/321 (13%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           +     L+RP +L++  GQ    +  +   +           +L  GPPG GKTTLA V+
Sbjct: 4   KQPLADLMRPASLDQMVGQEHLLAPGRPLYQIITEHLAV--SLLLWGPPGSGKTTLAYVM 61

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           ++ L + F   +  +  K      +  + ++  VL +DEIHRL+  +++ L P +E+  +
Sbjct: 62  SQTLQLPFEKFNASIQNKGQLQKLVDAHPDESFVLLLDEIHRLTKPLQDYLLPYLENGHI 121

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
            L+VG       + I                    ++ R  I              +V+ 
Sbjct: 122 -LLVGTTTENPIMAIQ-----------------PAIRSRCQIFEFFPIGAKAIEPVLVRA 163

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL- 253
            A   G  +  E A  IA    G  R++  +L  +             ++IAD A  +  
Sbjct: 164 AADHLGFTLPPEQAHAIANSGNGDVRVSLNILDTLHAM---HPKGLTMKDIADFARNQHF 220

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
           A DK      D  YL+    +  G           +      +E ++             
Sbjct: 221 AFDKDATRHYD--YLSAFQDSIEGSDADAALYYLAVILKSGDLESVV------------- 265

Query: 314 PRGRLLMPIAWQHLGIDIPHR 334
              R L   A   +G+  P R
Sbjct: 266 ---RRLKDSAALDVGLADPAR 283


>gi|330723792|gb|AEC46162.1| recombination factor protein RarA [Mycoplasma hyorhinis MCLD]
          Length = 405

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 68/316 (21%), Positives = 112/316 (35%), Gaps = 49/316 (15%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
            + LRP  LEEF GQ    + L+  I+            +F GP G GKTTLA ++A+ L
Sbjct: 3   ATKLRPENLEEFVGQPHLRTLLEKLIQTQDK-----SSFIFYGPSGTGKTTLAILLAKNL 57

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM- 137
            + F   +   I    DL   L  ++D  V+ IDE+HRL+   ++IL   +E  +     
Sbjct: 58  NLKFDIFNA-TIENKSDL---LQKIKDNQVVIIDEVHRLNKDKQDILLSHLEQGETTFYL 113

Query: 138 -VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA 196
              E P  + V    SR  L+           PL           + +  +L  I+    
Sbjct: 114 CTTENPFFKIVPAIRSRTYLLEF--------KPLSFEDIFLRLSLYLKNNNLSQII---- 161

Query: 197 KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAID 256
                   D     I   S G  R +   L  +    +  + +    +    ++     D
Sbjct: 162 -------DDSLLKFIIRHSNGDLRQSLNNLSLILKLNKKKNIEKEDIKAIIPSMN-FYSD 213

Query: 257 KMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRG 316
           + G +  D  YL+   ++  G           +      I           G I      
Sbjct: 214 EKGDNHYD--YLSAFHKSLRGSDEDASLYYGAIILHSGDI----------DGLI------ 255

Query: 317 RLLMPIAWQHLGIDIP 332
           R L+ +  + +G+  P
Sbjct: 256 RRLIAVVHEDIGLANP 271


>gi|308184225|ref|YP_003928358.1| recombination factor protein RarA [Helicobacter pylori SJM180]
 gi|308060145|gb|ADO02041.1| recombination factor protein RarA [Helicobacter pylori SJM180]
          Length = 391

 Score =  112 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 76/321 (23%), Positives = 117/321 (36%), Gaps = 53/321 (16%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           SLL P++LE+F GQ           +A +++     H  F GPPG+GKT+LAQ++AR L 
Sbjct: 5   SLLNPKSLEDFLGQEHLIGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIARSLE 62

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
               S +     K  DL   L N ++   + V+FIDE HRL+   +E L P ME     L
Sbjct: 63  RPILSFNATDF-KLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKNH-AL 120

Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA 196
           ++G      +                   L++ ++ R  I   L      DL  +  +  
Sbjct: 121 ILGASTQDPN-----------------YSLSHAIRSRSFI-FELTPLNKSDLDKLCTKAL 162

Query: 197 KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAID 256
            L    +  +A   +   S G  R    LL           +  I   I    L  L   
Sbjct: 163 ALLKKQIEPDAKTYLLNNSAGDARALLNLLDL---------SAKIEDPITLKTLQSLRPH 213

Query: 257 KMGFDQL--DLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
            +       D  Y                  SA +   R + E+    Y+ +       P
Sbjct: 214 SLNDGSYSDDTHYNLT---------------SALIKSLRGSDENASIYYLARLIAGGENP 258

Query: 315 R--GRLLMPIAWQHLGIDIPH 333
               R L+  A + +G   P+
Sbjct: 259 EFIARRLVVFASEDIGNANPN 279


>gi|241952086|ref|XP_002418765.1| AAA family ATPase, putative [Candida dubliniensis CD36]
 gi|223642104|emb|CAX44070.1| AAA family ATPase, putative [Candida dubliniensis CD36]
          Length = 490

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 64/265 (24%), Positives = 105/265 (39%), Gaps = 19/265 (7%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
             +RP T E++ GQ    +     I         L  ++  GPPG+GKTTLA V++ E G
Sbjct: 24  EAIRPTTFEQYVGQDHLINPQNGAIRNFIKLG-YLPSMILSGPPGIGKTTLASVISYECG 82

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
           + F   S   +    DL  ++     + VLFIDE+HRL+ I ++ L P +E+ ++ L+  
Sbjct: 83  LPFLELSATTMT-TSDLKIIMETHNTQLVLFIDELHRLTKIQQDWLLPYIENGKIILIGA 141

Query: 140 EGPSARSVKIN---LSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA 196
                 S +I    LSR  +      +      +     I   L    +  L  IV +  
Sbjct: 142 TTVQPNSTRIRQAILSRCQIFKLEKLIVPEIKKVLYHAIIFQNLKRKNLYQLGNIVYKS- 200

Query: 197 KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD-FAEVAHAKTITREIADA---ALLR 252
                    E    I  R++G  RIA  L+  + D F +  +   ++++       +L  
Sbjct: 201 ---------ECFDLILNRAQGDCRIAINLVELISDNFVDNINDVELSKDKLQQIFHSLNY 251

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGG 277
                 G D  D      +     G
Sbjct: 252 NNSLGFGGDNYDDIMTRFMRILAQG 276


>gi|224418782|ref|ZP_03656788.1| recombination factor protein RarA [Helicobacter canadensis MIT
           98-5491]
 gi|253826695|ref|ZP_04869580.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|313142299|ref|ZP_07804492.1| recombination factor protein RarA [Helicobacter canadensis MIT
           98-5491]
 gi|253510101|gb|EES88760.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|313131330|gb|EFR48947.1| recombination factor protein RarA [Helicobacter canadensis MIT
           98-5491]
          Length = 391

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 71/318 (22%), Positives = 117/318 (36%), Gaps = 59/318 (18%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  ++F GQ         F+   K+    + H  F GPPG GKTT A+++A EL   F
Sbjct: 9   RPKNFQQFIGQKHIFGENSPFMRLLKSGE--IPHSFFFGPPGSGKTTAARLIANELDYPF 66

Query: 83  RSTSGPVIAKAGDLAALLTNLE---DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137
            S +     K+ DL  +L   +    + ++FIDE+HRL+   +E+L P ME+ Q  ++  
Sbjct: 67  YSLNATSF-KSEDLRNILKQHQNTLQKPLIFIDEVHRLNKAQQELLLPIMENHQALILGA 125

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
             E P    +    SR                           +    E+L  I++    
Sbjct: 126 SMENPFFSLINAIRSR---------------------SFVFEFHRLNKEELAQILE---- 160

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257
               ++ D     +   S G  R    LL       ++     + + I   +L   A D 
Sbjct: 161 --EYSLEDSIKDFLIGTSGGDARAMLNLLDCAL-STKMPLTLELLKSIRPHSLNSSASDS 217

Query: 258 MGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR-- 315
                 D  Y                 ISA +   R + E+    Y+ +       P   
Sbjct: 218 ------DTHY---------------NLISAMIKSIRGSDENAAIYYLARLIEGGENPEFI 256

Query: 316 GRLLMPIAWQHLGIDIPH 333
            R L+ +A + +G   P+
Sbjct: 257 ARRLVILASEDIGNANPN 274


>gi|304373330|ref|YP_003856539.1| ATPase family associated with various cellular activities
           [Mycoplasma hyorhinis HUB-1]
 gi|304309521|gb|ADM22001.1| ATPase family associated with various cellular activities
           [Mycoplasma hyorhinis HUB-1]
          Length = 405

 Score =  112 bits (279), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 67/316 (21%), Positives = 112/316 (35%), Gaps = 49/316 (15%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
            + LRP  LEEF GQ    + L+  I+            +F GP G GKT+LA ++A+ L
Sbjct: 3   ATKLRPENLEEFVGQPHLRTLLEKLIQTQDK-----SSFIFYGPSGTGKTSLAILLAKNL 57

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM- 137
            + F   +   I    DL   L  ++D  V+ IDE+HRL+   ++IL   +E  +     
Sbjct: 58  NLKFDIFNA-TIENKSDL---LQKIKDNQVVIIDEVHRLNKDKQDILLSHLEQGETTFYL 113

Query: 138 -VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA 196
              E P  + V    SR  L+           PL           + +  +L  I+    
Sbjct: 114 CTTENPFFKIVPAIRSRTYLLEF--------KPLSFEDIFLRLSLYLKNNNLSQII---- 161

Query: 197 KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAID 256
                   D     I   S G  R +   L  +    +  + +    +    ++     D
Sbjct: 162 -------DDSLLKFIIRHSNGDLRQSLNNLSLILKLNKKKNIEKEDIKAIIPSMN-FYSD 213

Query: 257 KMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRG 316
           + G +  D  YL+   ++  G           +      I           G I      
Sbjct: 214 EKGDNHYD--YLSAFHKSLRGSDEDASLYYGAIILHSGDI----------DGLI------ 255

Query: 317 RLLMPIAWQHLGIDIP 332
           R L+ +  + +G+  P
Sbjct: 256 RRLIAVVHEDIGLANP 271


>gi|146328648|ref|YP_001209397.1| recombination factor protein RarA [Dichelobacter nodosus VCS1703A]
 gi|146232118|gb|ABQ13096.1| ATPase, AAA family domain protein [Dichelobacter nodosus VCS1703A]
          Length = 429

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 69/343 (20%), Positives = 118/343 (34%), Gaps = 56/343 (16%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M ++  L + +          LRPRTL E+ GQ            A     +    ++  
Sbjct: 1   MTEQASLFAAST----PLAQRLRPRTLAEYVGQQHIVGQGTPL--AVAVERKQPFSMVLW 54

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAA------LLTNLEDRDVLFIDEI 114
           G PG GKTTLA ++A      F   S  V +   ++        L      + +LFIDEI
Sbjct: 55  GAPGCGKTTLALLLAHLFDAEFIRLSA-VFSGVKEVREASIQAQLFHQNGRQTLLFIDEI 113

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR +   ++ L P +E+  +  +    E P+    +  LSR  ++A              
Sbjct: 114 HRFNKAQQDALLPDIENGAVIFIGATTENPAFHLNRALLSRVRVLALK------------ 161

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
                        ED++  ++RG    G       A       +   R AG   R+  + 
Sbjct: 162 ---------PLSAEDIEKTLRRGLSALGKDDLSADAE-----LKTIARFAGGDARKALND 207

Query: 233 AEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEP 292
            E             +AL +L   +     +D +           G +  E +SA     
Sbjct: 208 LEEWSLLLDGGLSPQSALEKLLAHRP--QSIDKQ-----------GTLFYEQLSAFHKSL 254

Query: 293 RDAIEDLIEPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDIPH 333
           R +  D    +  +       P    R ++ +A + +G   P+
Sbjct: 255 RGSSVDGALYWCARMLEGGVDPLILCRRMLCVASEDIGNADPN 297


>gi|237733854|ref|ZP_04564335.1| recombination protein rarA [Mollicutes bacterium D7]
 gi|229383192|gb|EEO33283.1| recombination protein rarA [Coprobacillus sp. D7]
          Length = 421

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 59/327 (18%), Positives = 108/327 (33%), Gaps = 58/327 (17%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
            + +RP+ L++  GQ        +  +  +        ++  G PG GKTT+A  +A +L
Sbjct: 6   ANRMRPQNLKDIIGQQHLVGPNAILTKFVQKSH--PFSIILYGSPGCGKTTIAMALANDL 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
            + +R  +        ++ A++   +      + IDE+HRL+   ++ L   ME   L +
Sbjct: 64  DIPYRIFNAST-GNKKEMDAIIEEAKLSGSLFVIIDEVHRLNKARQDDLLSHMESGLLIV 122

Query: 137 M--VGEGPSARSVKINLSRFTLIAAT-----TRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
                  P         SR  ++          V  L   +    G+  +   Y IE   
Sbjct: 123 AGCTTANPFHSINPAIRSRCHILEVRPLTVDEIVAGLNKAMTSPNGLNSK---YTIEK-- 177

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
                           EA   IA    G  R     L       E  H      ++  AA
Sbjct: 178 ----------------EALHSIAKLCSGDIRYGYNCLEICTIVCENNH--ITQADLKTAA 219

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY---MIQ 306
           +    +     D                     +T+S      R +  +    Y   +I+
Sbjct: 220 IKTNVVYDKDEDNY------------------YDTLSGLQKSIRGSDPNGAMYYFAKLIE 261

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
              I+     R L+  A++ +G+  P+
Sbjct: 262 SKDIE--SLERRLITTAYEDIGLANPN 286


>gi|312195527|ref|YP_004015588.1| AAA ATPase [Frankia sp. EuI1c]
 gi|311226863|gb|ADP79718.1| AAA ATPase central domain protein [Frankia sp. EuI1c]
          Length = 622

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 55/192 (28%), Positives = 70/192 (36%), Gaps = 40/192 (20%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              LRPR L+E  GQ              +        V+  GPPG GKTTLA +V+R  
Sbjct: 61  ADRLRPRGLDELVGQRHLLGPGSPLRRLVEGGGTT--SVVLWGPPGTGKTTLAHIVSRAT 118

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED--------------------------------- 105
           G  FR  S  V A   D+ A++    D                                 
Sbjct: 119 GRRFRELSA-VTAGVKDVRAVIDEARDALSSSRSNQSRRMVREPGLFSDAAQAPGGEVPV 177

Query: 106 --RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATT 161
             R VLFIDE+HR +   ++ L PA+E   + L+    E PS   V   LSR  L   T 
Sbjct: 178 DLRTVLFIDEVHRFTRTQQDALLPAVERGWITLVAATTENPSFSVVAPLLSRSLLFTLTP 237

Query: 162 RVGLLTNPLQDR 173
                   L  R
Sbjct: 238 LTDDDIRALVRR 249


>gi|47094638|ref|ZP_00232270.1| holliday junction DNA helicase RuvB [Listeria monocytogenes str. 4b
           H7858]
 gi|47016988|gb|EAL07889.1| holliday junction DNA helicase RuvB [Listeria monocytogenes str. 4b
           H7858]
          Length = 84

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 39/80 (48%), Positives = 55/80 (68%)

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L +D  G D +D + L  I ++F GGPVG++TI+A + E R+ IED+ EPY++Q GF+Q
Sbjct: 1   MLQVDPRGLDTIDQKLLHTIIQSFRGGPVGLDTIAASIGEERETIEDMQEPYLLQIGFLQ 60

Query: 312 RTPRGRLLMPIAWQHLGIDI 331
           RTPRGR+    A+ HLGI  
Sbjct: 61  RTPRGRIATETAYNHLGISY 80


>gi|67480321|ref|XP_655510.1| AAA family ATPase [Entamoeba histolytica HM-1:IMSS]
 gi|56472656|gb|EAL50122.1| AAA family ATPase, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 482

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 70/365 (19%), Positives = 124/365 (33%), Gaps = 77/365 (21%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                 RP+ LE+  GQ  A      F        ++L   +  GPPG GKTT+A+++  
Sbjct: 30  PLAERQRPKRLEDIIGQESAIGIGTPFNSMIL--NDSLQSTILFGPPGSGKTTIARIIKN 87

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEILYPAM 129
                F   S    +K  +L  ++   ++R        +LF+DEIH L+ + ++I  PA+
Sbjct: 88  TSKSFFVQISSVTTSK-EELKNVIEQAKERKKREKKDTILFVDEIHTLNKLQQDIFLPAI 146

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAAT---------------TRVGLLTNPLQD 172
           E+  + L+    E PS +     +SR  L+                           + D
Sbjct: 147 ENGSIILVGATTENPSFQLNNALMSRCNLVILKRLENESINKIIKKAIKEEYQNNKFVID 206

Query: 173 RFGIPIRLNF---------------------YEIEDLKTIVQ-RGAKLTGLAVTDEAACE 210
             GI I   +                        E+L  I++   +  T + + +     
Sbjct: 207 ESGINIISKYADGDARNGLNCLEFIFNYFNNLSEEELNEIIKSNESDNTTIVIDENDCIV 266

Query: 211 IAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL--AIDKMGFDQLDLRYL 268
              R       + + +   ++        T+T EI    L +     DK G D       
Sbjct: 267 PKERELENIEFSYQPIEEPKEIHI-----TLTSEIISKFLQKQNFQYDKSGEDHY----- 316

Query: 269 TMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQH 326
                          TISA     R   E+    ++ +  F    P+   R ++  A + 
Sbjct: 317 --------------NTISAFHKSMRGGDENAAIYWLGRMIFSGENPKYIARRMIRFATED 362

Query: 327 LGIDI 331
           +G+  
Sbjct: 363 IGLAD 367


>gi|210134616|ref|YP_002301055.1| recombination factor protein RarA [Helicobacter pylori P12]
 gi|210132584|gb|ACJ07575.1| recombination factor protein [Helicobacter pylori P12]
          Length = 391

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 73/319 (22%), Positives = 115/319 (36%), Gaps = 49/319 (15%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           SLL P++LE+F GQ           +A +++     H  F GPPG+GKT+LAQ++AR L 
Sbjct: 5   SLLNPKSLEDFLGQEHLIGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIARSLE 62

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
               S +     K  DL   L N ++   + ++FIDE HRL+   +E L P ME     L
Sbjct: 63  RPILSFNATDF-KLEDLRLKLKNYQNTLLKPIVFIDETHRLNKTQQEFLLPIMEKDH-AL 120

Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA 196
           ++G      +                   L++ ++ R      L      DL  +  +  
Sbjct: 121 ILGASTQDPN-----------------YSLSHAIRSRS-FTFELTPLNKSDLDRLCDKAL 162

Query: 197 KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAID 256
            L    +   A   +   S G  R    LL       +    KT+      +       D
Sbjct: 163 TLLKKQIEPSAKTYLLNNSAGDARALLNLLELSAKIEDPITLKTLKSLRPHSLNDGSYSD 222

Query: 257 KMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR- 315
                  D  Y                  SA +   R + E+    Y+ +       P  
Sbjct: 223 -------DTHYNLT---------------SALIKSLRGSDENASIYYLTRLIAGGENPEF 260

Query: 316 -GRLLMPIAWQHLGIDIPH 333
             R L+  A + +G   P+
Sbjct: 261 IARRLVIFASEDIGNANPN 279


>gi|210622564|ref|ZP_03293246.1| hypothetical protein CLOHIR_01194 [Clostridium hiranonis DSM 13275]
 gi|210154147|gb|EEA85153.1| hypothetical protein CLOHIR_01194 [Clostridium hiranonis DSM 13275]
          Length = 438

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 60/327 (18%), Positives = 113/327 (34%), Gaps = 46/327 (14%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP  +E+  GQ       KV     ++    + +++F GPPG GKTTLA ++A   
Sbjct: 13  ADRFRPSKIEDMVGQSHIIGENKVMNRIIQSGN--IPNMIFYGPPGTGKTTLANIIANAT 70

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAMED 131
           G  +   +  V     ++  ++ + +          +L +DEI  L+   ++ L   +E+
Sbjct: 71  GKKYVKLNA-VNCGVKEIKEVIESSKRENLFSFNGIILMLDEIQALNRKQQQSLLEVIEE 129

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             + L+    + P     K  LSR                      +       E ED+ 
Sbjct: 130 GSVTLIASTADNPYFVIYKAILSR---------------------SVVFEFKPIEKEDVV 168

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
             ++   +      T               RI+   +R   +  E+A    I        
Sbjct: 169 EGLKNCVEKLKDNKTYTIGNVEDEALEHIARISNGDMRTAINRLELAFNLGINIATGVVD 228

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY---MIQ 306
           +    +     D    + L+        G  G   +SA     R +  D    Y   +I+
Sbjct: 229 ITLQNV----LDSSTAKSLS----YDRKGDDGYSILSAFHKSLRGSDVDAALHYLARLIK 280

Query: 307 QGFIQRTPRGRLLMPIAWQHLGIDIPH 333
              +Q     R L+ +A + +G+ +P+
Sbjct: 281 AEDMQNIT--RRLLCVASEDVGLAVPN 305


>gi|308182591|ref|YP_003926718.1| recombination factor protein RarA [Helicobacter pylori PeCan4]
 gi|308064776|gb|ADO06668.1| recombination factor protein RarA [Helicobacter pylori PeCan4]
          Length = 391

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 72/319 (22%), Positives = 114/319 (35%), Gaps = 49/319 (15%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           SLL P++LE+F GQ           +A +++     H  F GPPG+GKT+LAQ++A  L 
Sbjct: 5   SLLNPKSLEDFLGQEHLIGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIAHALE 62

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
                 +     K  DL   L N ++   + V+FIDE HRL+   +E L P ME     L
Sbjct: 63  RPILLFNATDF-KLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDH-AL 120

Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA 196
           ++G      +                   L++ ++ R  I   L      DL  +  +  
Sbjct: 121 ILGASTQDPN-----------------YSLSHAIRSRSFI-FELTPLNKSDLDKLCVKAL 162

Query: 197 KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAID 256
            L    +   A   +   S G  R    LL              IT E   +       D
Sbjct: 163 TLLKKQIEPSAKTYLLNNSAGDARALLNLLDL-----SAKIENPITLETLQSLRPHSLND 217

Query: 257 KMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR- 315
               D       + + ++  G            S+   +I      Y+ +       P  
Sbjct: 218 GSYSDDTHYNLTSALIKSLRG------------SDENASI-----YYLARLIAGGENPEF 260

Query: 316 -GRLLMPIAWQHLGIDIPH 333
             R L+  A + +G   P+
Sbjct: 261 IARRLVIFASEDIGNANPN 279


>gi|289423563|ref|ZP_06425364.1| recombination factor protein RarA [Peptostreptococcus anaerobius
           653-L]
 gi|289156065|gb|EFD04729.1| recombination factor protein RarA [Peptostreptococcus anaerobius
           653-L]
          Length = 423

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 66/327 (20%), Positives = 117/327 (35%), Gaps = 45/327 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                 RP+ +E+  GQ       K+F    +       +++F G PG+GKTT+A+++A 
Sbjct: 2   PLADKYRPKKIEDIVGQSHIVGKGKLFNNMLEK--NYYPNMIFFGGPGIGKTTVAEILAS 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD-----VLFIDEIHRLSIIVEEILYPAMED 131
               +F   +    +   D+  ++  +   D     +L+IDEI   +   ++ +   +E 
Sbjct: 60  SADKSFYKINAS-NSSLEDIKKVIGQIGKLDNSNGILLYIDEIQSFNKKQQQSILEFIEK 118

Query: 132 FQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             + L+    E P     K  LSR  +I                 G+   +N Y      
Sbjct: 119 GDITLIASTTENPYHYVYKAILSRSVVIEFKPISQGDI-----VVGLRRIVNTYN----- 168

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
                G  ++ L   D+    IA  S G  R A  +L    + A +     I  + +   
Sbjct: 169 -----GNNISHLKCDDDCLKVIASASGGDMRSAINVLELAINNAILDSDSNIVIDPSV-- 221

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ-- 307
                      D L+   L         G V    +SA     R +  D    Y+ +   
Sbjct: 222 ----------LDSLN---LATAYNFDMDGDVHYNLLSAFQKSIRGSDPDAAVYYLARLVK 268

Query: 308 -GFIQRTPRGRLLMPIAWQHLGIDIPH 333
            G +      R L+ IA + +G+  P+
Sbjct: 269 GGDLISIC--RRLLVIASEDVGLAYPN 293


>gi|307720121|ref|YP_003891261.1| Recombination protein MgsA [Sulfurimonas autotrophica DSM 16294]
 gi|306978214|gb|ADN08249.1| Recombination protein MgsA [Sulfurimonas autotrophica DSM 16294]
          Length = 391

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 69/321 (21%), Positives = 121/321 (37%), Gaps = 55/321 (17%)

Query: 21  LLRPRTLEEFTGQVEACS---NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           LLRP + +E  GQ    +    L++  E      EAL H  F GP G+GKT+LA+V+A+ 
Sbjct: 6   LLRPSSFDEIIGQEHLSAEDAPLRILCE-----KEALGHSFFYGPAGVGKTSLARVIAKT 60

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLE---DRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           + + F   +   + K   L  +    +    + ++FIDE+HRLS   +E+L P ME+  +
Sbjct: 61  MQLPFYEFNATSL-KIEQLRKIFEQYKNALQKPLIFIDEVHRLSKNQQEVLLPVMENNSV 119

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
            L++G                          LT+ ++ R  +    +      L+ ++Q+
Sbjct: 120 -LIIGASTENP-----------------FYSLTSAIRSRSMLFELKSILHA-SLEKLLQK 160

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
             +   + +  +A   +   S G  R   +LL    +        T+     +A     A
Sbjct: 161 ALQRGEIMLERDAQEYLIASSGGDARAMLKLLEFASNIQSKITLDTLKSLRPNA---LQA 217

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ--GFIQR 312
                    DL                    SA +   R +  D    Y+ +   G    
Sbjct: 218 GSSEAGVHYDLA-------------------SALIKSIRGSDADAAIYYLARLIDGGESA 258

Query: 313 TPRGRLLMPIAWQHLGIDIPH 333
               R L+ +A + +G   P 
Sbjct: 259 DFIARRLVILASEDIGNANPQ 279


>gi|223038447|ref|ZP_03608741.1| ATPase, AAA family protein [Campylobacter rectus RM3267]
 gi|222880304|gb|EEF15391.1| ATPase, AAA family protein [Campylobacter rectus RM3267]
          Length = 394

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 76/315 (24%), Positives = 123/315 (39%), Gaps = 56/315 (17%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
             RPR+L+E  GQ E     K FIE  K     + H +F GP G GKT+ A+VVAR +  
Sbjct: 7   KFRPRSLDEICGQRELVGVFKKFIENKK-----IPHSIFYGPAGCGKTSFARVVARSMEY 61

Query: 81  NFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           +F    G  + K  +   +L N E+   + + FIDEIHRLS   +E L   ME+++  ++
Sbjct: 62  DFYEFDGGNL-KIEEFRKILKNHENALSKPLFFIDEIHRLSKTQQEALLIPMENYRAAII 120

Query: 138 --VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
               E P                       L++ ++ R  +         ED + +++R 
Sbjct: 121 GASTENPYF--------------------TLSSGIRSRS-MLFEFKPLASEDFEKLLERV 159

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255
                  ++DEA   +   S G  R    LL     FA     +     +     LR   
Sbjct: 160 RGEVKFDISDEAKAYLIKSSGGDARGLLNLLE----FAVSLGEEITLANLKT---LRANA 212

Query: 256 DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR 315
              G  + D+ Y             G+   SA +   R + E+ +  Y+ +      +  
Sbjct: 213 VSEGVSEDDVHY-------------GLA--SAFIKSLRGSDENAVIYYLARLIDAGESAD 257

Query: 316 --GRLLMPIAWQHLG 328
              R +   A + +G
Sbjct: 258 FIARRMAIFASEDIG 272


>gi|15611466|ref|NP_223117.1| recombination factor protein RarA [Helicobacter pylori J99]
 gi|4154931|gb|AAD05978.1| putative [Helicobacter pylori J99]
          Length = 391

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 75/320 (23%), Positives = 116/320 (36%), Gaps = 53/320 (16%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           LL P++LEEF GQ           +A +++     H  F GPPG+GKT+LAQ++AR L  
Sbjct: 6   LLNPKSLEEFLGQEHLIGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIARSLKR 63

Query: 81  NFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
              S +     K  DL   L N ++   + V+FIDE HRL+   +E L P ME  +  L+
Sbjct: 64  PILSFNATDF-KLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKNR-ALI 121

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
           +G      +                   L++ ++ R      L   +  DL  +  +   
Sbjct: 122 LGASTQDPN-----------------YSLSHAIRSRS-FTFELTPLKKSDLDRLCDKALT 163

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257
           L    +   A   +   S G  R    LL           +  I   I    L  L    
Sbjct: 164 LLKKQIEPGAKTYLLNNSAGDARALLNLLDL---------SAKIENPITLKTLQSLRPHS 214

Query: 258 MGFDQL--DLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR 315
           +       D  Y                  SA +   R + E+    Y+ +       P 
Sbjct: 215 LNDGSYNDDTHYNLT---------------SALIKSLRGSDENASMYYLTRLVAGGENPE 259

Query: 316 --GRLLMPIAWQHLGIDIPH 333
              R L+  A + +G   P+
Sbjct: 260 FIARRLVIFASEDIGNANPN 279


>gi|255323655|ref|ZP_05364785.1| ATPase, AAA family [Campylobacter showae RM3277]
 gi|255299369|gb|EET78656.1| ATPase, AAA family [Campylobacter showae RM3277]
          Length = 394

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 76/313 (24%), Positives = 122/313 (38%), Gaps = 52/313 (16%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
             RPR+L+E  GQ E     K FIE  K     + H +F GP G GKT+ A+VVAR +  
Sbjct: 7   KFRPRSLDEICGQRELVGVFKKFIENKK-----IPHSIFYGPAGCGKTSFARVVARSMEY 61

Query: 81  NFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           +F    G  + K  +   +L N E+   + + FIDEIHRLS   +E L   ME+++  + 
Sbjct: 62  DFYEFDGGNL-KIEEFRKILKNHENALSKPLFFIDEIHRLSKTQQEALLIPMENYRAAI- 119

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
           +G       +                  L++ ++ R  +         ED + +++R   
Sbjct: 120 IGASTENPYI-----------------TLSSGIRSRS-MLFEFKPLASEDFEKLLERVRD 161

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257
                ++DEA   +   S G  R    LL            + IT E      LR     
Sbjct: 162 EVKFDISDEAKAYLVKSSGGDARGLLNLLEFAVSL-----DEKITLENLKT--LRANAVS 214

Query: 258 MGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR-- 315
            G    D+ Y             G+   SA +   R + E+ +  Y+ +      +    
Sbjct: 215 EGVSDDDVHY-------------GLA--SAFIKSLRGSDENAVMYYLARLIDAGESADFI 259

Query: 316 GRLLMPIAWQHLG 328
            R +   A + +G
Sbjct: 260 ARRMAIFASEDIG 272


>gi|161621803|ref|YP_016214.2| recombination factor protein RarA [Mycoplasma mobile 163K]
          Length = 406

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 68/320 (21%), Positives = 118/320 (36%), Gaps = 55/320 (17%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
            + +RP  LE+  GQ       K  IE      + +   +F G  G+GKTT A V+A+E 
Sbjct: 5   ANKIRPERLEDIVGQSHLIELFKAIIE-----KQEMSSFIFYGESGIGKTTAATVIAKEK 59

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM- 137
             ++   +  + +K      LL  L    +L IDE+HRL+   +EIL   +ED ++ L  
Sbjct: 60  QESYDVFNPTIHSKK----ELLEKLAINKILIIDELHRLNKDKQEILLSYLEDDKIILYA 115

Query: 138 -VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA 196
              E P  + +    SR  ++               RF        +  + LK I+++  
Sbjct: 116 TTTENPYFKIIPSLRSRLKIL---------------RFNKLSETEIF--QGLKNIIEKY- 157

Query: 197 KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAID 256
               + + D+    I   S G  R A   L  +       +    + +    ++     D
Sbjct: 158 -KLKIKINDDLLLSIVKFSAGDFRNAINNLDLIETIYPNTNVDFESIKKIFPSMN-FYTD 215

Query: 257 KMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY---MIQQGFIQRT 313
           K      D                   T+SA     R +  D    Y   + + G I   
Sbjct: 216 KDADKHYD-------------------TLSAFHKSLRGSDPDAALYYGMLLAKAGDIDAL 256

Query: 314 PRGRLLMPIAWQHLGIDIPH 333
              R L+ +A++ + +  P+
Sbjct: 257 L--RRLIMVAYEDIALANPN 274


>gi|258567326|ref|XP_002584407.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
 gi|237905853|gb|EEP80254.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
          Length = 536

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 70/329 (21%), Positives = 115/329 (34%), Gaps = 57/329 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEAC--SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
                +RPRTL+E  GQ        L+  IE      + +  ++  G  G GKTT+A+V+
Sbjct: 125 PLAERMRPRTLDEVCGQELVGPNGVLRGLIE-----TDRVPSMILWGGTGTGKTTIARVI 179

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYP 127
           A  +G  F   +    +   +   +             + ++F DEIHR S   +++   
Sbjct: 180 ATMVGSRFVEINS-TSSGVAECKKIFAEARNELGLTGRKTIIFCDEIHRFSKSQQDVFLG 238

Query: 128 AMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
            +E+ Q+ L+    E PS +     LSR      +         + +R       N Y  
Sbjct: 239 PVENGQVTLIGATTENPSFKVQNALLSRCRTFTLSKLTDSDIISILNRAREVEGPN-YSP 297

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
            DL              V +E    +A  + G  R +  LL    D ++      +T+  
Sbjct: 298 TDL--------------VDEELVAYLAAFADGDARTSLNLLELAMDLSKRPG---MTKSE 340

Query: 246 ADAALLRL-AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
               L R    D+ G    D                   TISA     R +  D    Y+
Sbjct: 341 LKKGLTRTLVYDRAGDQHYD-------------------TISAFHKSIRGSDPDAALYYL 381

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
            +       P    R L+ IA + +G+  
Sbjct: 382 ARMIQSGEDPLYIARRLIVIASEDVGLAD 410


>gi|208434367|ref|YP_002266033.1| conserved hypothetical helicase-like protein [Helicobacter pylori
           G27]
 gi|208432296|gb|ACI27167.1| conserved hypothetical helicase-like protein [Helicobacter pylori
           G27]
          Length = 391

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 75/321 (23%), Positives = 116/321 (36%), Gaps = 53/321 (16%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           SLL P++LE+F GQ           +A +++     H  F GPPG+GKT+LAQ++AR L 
Sbjct: 5   SLLNPKSLEDFLGQEHLVGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIARSLE 62

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
                 +     K  DL   L N ++   + V+FIDE HRL+   +E L P ME     L
Sbjct: 63  RPILLFNATDF-KLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKNH-AL 120

Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA 196
           ++G      +                   L++ ++ R  I   L   +  DL  +  +  
Sbjct: 121 ILGASTQDPN-----------------YSLSHAIRSRSFI-FELTPLKKSDLDKLCTKAL 162

Query: 197 KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAID 256
            L    +   A   +   S G  R    LL           +  I   I    L  L   
Sbjct: 163 TLLKKQIEPSAKTYLLNNSAGDARALLNLLDL---------SAKIEDPITLKTLQSLRPH 213

Query: 257 KMGFDQL--DLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
            +       D  Y                  SA +   R + E+    Y+ +       P
Sbjct: 214 SLNDGSYSDDTHYNLT---------------SALIKSLRGSDENASIYYLARLIAGGENP 258

Query: 315 R--GRLLMPIAWQHLGIDIPH 333
               R L+  A + +G   P+
Sbjct: 259 EFIARRLVIFASEDIGNANPN 279


>gi|317013863|gb|ADU81299.1| recombination factor protein RarA [Helicobacter pylori Gambia94/24]
          Length = 391

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 75/321 (23%), Positives = 116/321 (36%), Gaps = 53/321 (16%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +LL P +LE+F GQ           +A +++     H  F GPPG+GKT+LAQ++AR L 
Sbjct: 5   ALLNPTSLEDFLGQEHLIGKDTPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIARSLE 62

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
                 +     K  DL   L N ++   + V+FIDE HRL+   +E L P ME     L
Sbjct: 63  CPILLFNATDF-KLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKNH-AL 120

Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA 196
           ++G      +                   L++ ++ R  I   L   +  DL  +  +  
Sbjct: 121 ILGASTQDPN-----------------YSLSHAIRSRSFI-FELTPLKKSDLDRLCDKAL 162

Query: 197 KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAID 256
            L    +   A   +   S G  R    LL           +  I   I    L  L   
Sbjct: 163 TLLQKQIEPGAKTYLLNNSAGDARALLNLLDL---------SAKIENPITLKTLQSLRPH 213

Query: 257 KMGFDQL--DLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
            +       D  Y                 ISA +   R + E+    Y+ +       P
Sbjct: 214 SLNDGSYSDDTHY---------------NLISALIKSLRGSDENASIYYLARLIAGGENP 258

Query: 315 R--GRLLMPIAWQHLGIDIPH 333
               R L+  A + +G   P+
Sbjct: 259 EFIARRLVIFASEDIGNANPN 279


>gi|297379642|gb|ADI34529.1| recombination factor protein RarA [Helicobacter pylori v225d]
          Length = 391

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 74/321 (23%), Positives = 114/321 (35%), Gaps = 53/321 (16%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           SLL P++LE+F GQ           +A +++     H  F GPPG+GKT+LAQ++A  L 
Sbjct: 5   SLLNPKSLEDFLGQEHLIGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIAHALE 62

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
                 +     K  DL   L N ++   + V+FIDE HRL+   +E L P ME     L
Sbjct: 63  RPILLFNATDF-KLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDH-AL 120

Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA 196
           ++G      +                   L++ ++ R  I   L      DL  +  +  
Sbjct: 121 ILGASTQDPN-----------------YSLSHAIRSRSFI-FELTPLNKSDLDNLCAKAL 162

Query: 197 KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAID 256
            L    +   A   +   S G  R    LL           +  I   I    L  L   
Sbjct: 163 TLLKKQIEPSAKTYLLNNSAGDARALLNLLDL---------SAKIEDPITLKTLQSLRPH 213

Query: 257 KMGFDQL--DLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
            +       D  Y                  SA +   R + E+    Y+ +       P
Sbjct: 214 SLNDGSYSDDTHYNLT---------------SALIKSLRGSDENASIYYLARLIAGGENP 258

Query: 315 R--GRLLMPIAWQHLGIDIPH 333
               R L+  A + +G   P+
Sbjct: 259 EFIARRLVVFASEDIGNANPN 279


>gi|308063282|gb|ADO05169.1| recombination factor protein RarA [Helicobacter pylori Sat464]
          Length = 391

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 75/321 (23%), Positives = 115/321 (35%), Gaps = 53/321 (16%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           SLL P++LE+F GQ           +A +++     H  F GPPG+GKT+LAQ++AR L 
Sbjct: 5   SLLNPKSLEDFLGQEHLIGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIARMLE 62

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
                 +     K  DL   L N ++   + V+FIDE HRL+   +E L P ME     L
Sbjct: 63  RPILLFNATDF-KLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDH-AL 120

Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA 196
           ++G      +                   L++ ++ R  I   L      DL  +  +  
Sbjct: 121 ILGASTQDPN-----------------YSLSHAIRSRSFI-FELTPLNKSDLDKLCAKAL 162

Query: 197 KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAID 256
            L    +   A   +   S G  R    LL           +  I   I    L  L   
Sbjct: 163 TLLKKQIEPSAKTYLLNNSAGDARALLNLLDL---------SAKIEDPITLETLQSLRSH 213

Query: 257 KMGFDQL--DLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
            +       D  Y                  SA +   R + E+    Y+ +       P
Sbjct: 214 SLNDGSYSDDTHYNLT---------------SALIKSLRGSDENASIYYLARLIAGGENP 258

Query: 315 R--GRLLMPIAWQHLGIDIPH 333
               R L+  A + +G   P+
Sbjct: 259 EFIARRLVIFASEDIGNANPN 279


>gi|317009066|gb|ADU79646.1| recombination factor protein RarA [Helicobacter pylori India7]
          Length = 391

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 75/319 (23%), Positives = 117/319 (36%), Gaps = 49/319 (15%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           SLL P++LE+F GQ           +A +++     H  F GPPG+GKT+LAQ++AR L 
Sbjct: 5   SLLNPKSLEDFLGQEHLVGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIARMLE 62

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
             F   +     K  DL   L N ++   + V+FIDE HRL+   +E L P ME     L
Sbjct: 63  RPFLLFNATDF-KLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKNH-AL 120

Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA 196
           ++G      +                   L++ ++ R  I   L      DL  +  +  
Sbjct: 121 ILGASTQDPN-----------------YSLSHAIRSRSFI-FELTPLNKSDLDKLCAKAL 162

Query: 197 KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAID 256
            L    +  +A   +   S G  R    LL       +    KT+      +       D
Sbjct: 163 TLLKKQIESDAKTYLLNNSAGDARALLNLLDLSAKIEDPITLKTLKSLRPHSLNDGSYSD 222

Query: 257 KMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR- 315
                  D  Y                  SA +   R + E+    Y+ +       P  
Sbjct: 223 -------DTHYNLT---------------SALIKSLRGSDENASIYYLARLIAGGENPEF 260

Query: 316 -GRLLMPIAWQHLGIDIPH 333
             R L+  A + +G   P+
Sbjct: 261 IARRLVIFASEDIGNANPN 279


>gi|167754507|ref|ZP_02426634.1| hypothetical protein CLORAM_00008 [Clostridium ramosum DSM 1402]
 gi|167705339|gb|EDS19918.1| hypothetical protein CLORAM_00008 [Clostridium ramosum DSM 1402]
          Length = 413

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 60/324 (18%), Positives = 107/324 (33%), Gaps = 58/324 (17%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +RP+ L++  GQ        +  +  +        ++  G PG GKTT+A  +A +L + 
Sbjct: 1   MRPQNLKDIIGQQHLVGPNAILTKFVQKSH--PFSIILYGSPGCGKTTIAMALANDLDIP 58

Query: 82  FRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137
           +R  +        ++ A++   +      + IDE+HRL+   ++ L   ME   L +   
Sbjct: 59  YRIFNAST-GNKKEMDAIIEEAKLSGSLFVIIDEVHRLNKARQDDLLSHMESGLLIVAGC 117

Query: 138 VGEGPSARSVKINLSRFTLIAAT-----TRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
               P         SR  ++          V  L   +    G+    N Y IE      
Sbjct: 118 TTANPFHSINPAIRSRCHILEVRPLTVDEIVAGLNKAMTSPNGLN---NKYTIEK----- 169

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
                        EA   IA    G  R     L       E  H      ++  AA+  
Sbjct: 170 -------------EALHSIAKLCSGDIRYGYNCLEICTIVCENNH--ITQADLKTAAIKT 214

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY---MIQQGF 309
             +     D                     +T+S      R +  +    Y   +I+   
Sbjct: 215 NVVYDKDEDNY------------------YDTLSGLQKSIRGSDPNGAMYYFAKLIESKD 256

Query: 310 IQRTPRGRLLMPIAWQHLGIDIPH 333
           I+     R L+  A++ +G+  P+
Sbjct: 257 IE--SLERRLITTAYEDIGLANPN 278


>gi|24213879|ref|NP_711360.1| recombination factor protein RarA [Leptospira interrogans serovar
           Lai str. 56601]
 gi|45658352|ref|YP_002438.1| recombination factor protein RarA [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|24194725|gb|AAN48378.1| recombination factor protein RarA [Leptospira interrogans serovar
           Lai str. 56601]
 gi|45601595|gb|AAS71075.1| ATPase [Leptospira interrogans serovar Copenhageni str. Fiocruz
           L1-130]
          Length = 423

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 66/322 (20%), Positives = 113/322 (35%), Gaps = 61/322 (18%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP + EE  GQ +A   L        A       ++  GPPG GK+TLA ++ R
Sbjct: 12  PLAHKIRPSSFEEVIGQSKATKQL--------ANYRFPVSIILYGPPGTGKSTLAGILCR 63

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE-DRDV-LFIDEIHRLSIIVEEILYPAMEDFQL 134
           +  + F   +  V     ++  LL   E +  + LF+DEIHR S   ++ L   +E   L
Sbjct: 64  KWNLPFVEYNA-VSTGVAEIKKLLERAEREGTILLFLDEIHRFSASQQDSLLKGVETGHL 122

Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            L+    E P+ R  +  LSR  ++                           +E+  +++
Sbjct: 123 ILIGATTENPAFRITRPLLSRCQILKI---------------------EPLSLEEQSSLL 161

Query: 193 QRGAK--LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           +RG +     + +  +A   +   S G  R     L                       L
Sbjct: 162 ERGIQNIEYSINLNQDAKETLIRFSGGDGRKLLSNLE---------------------GL 200

Query: 251 LRLAIDKMGFDQLDL-RYLTM-IARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
                +     + D+  YL   +      G    + ISA +   R +  D    Y+    
Sbjct: 201 SFSFPENHTISKSDVEEYLESRVIEYDKSGESHYDVISAFIKSVRGSDPDAALYYLAVLL 260

Query: 309 FIQRTPR--GRLLMPIAWQHLG 328
                P    R L+ +A + +G
Sbjct: 261 EGGEDPLFIMRRLIILASEDVG 282


>gi|317010695|gb|ADU84442.1| recombination factor protein RarA [Helicobacter pylori
           SouthAfrica7]
          Length = 391

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 74/319 (23%), Positives = 113/319 (35%), Gaps = 49/319 (15%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +LL P +LE+F GQ           +A +++     H  F GPPG+GKT+LAQ++AR L 
Sbjct: 5   ALLNPTSLEDFLGQEHLIGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIARSLE 62

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
                 +     K  DL   L N ++   + V+FIDE HRL+   +E L P ME     L
Sbjct: 63  RPILLFNATDF-KLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDH-AL 120

Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA 196
           ++G      +                   L++ ++ R  I   L      DL  +  +  
Sbjct: 121 ILGASTQDPN-----------------YSLSHAIRSRSFI-FELTPLNKSDLDRLCAKAL 162

Query: 197 KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAID 256
            L    +   A   +   S G  R    LL            KTI      +       D
Sbjct: 163 ALLKKQIEPNAKTYLLNNSAGDARALLNLLDLSAKIENPITLKTIKSLRPHSLNDGSYND 222

Query: 257 KMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR- 315
                  D  Y                  SA +   R + E+    Y+ +       P  
Sbjct: 223 -------DTHYNLT---------------SALIKSLRGSDENASLYYLARLIAGGENPEF 260

Query: 316 -GRLLMPIAWQHLGIDIPH 333
             R L+  A + +G   P+
Sbjct: 261 IARRLVIFASEDIGNANPN 279


>gi|254457233|ref|ZP_05070661.1| AAA ATPase [Campylobacterales bacterium GD 1]
 gi|207086025|gb|EDZ63309.1| AAA ATPase [Campylobacterales bacterium GD 1]
          Length = 395

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 68/321 (21%), Positives = 118/321 (36%), Gaps = 55/321 (17%)

Query: 21  LLRPRTLEEFTGQVEA---CSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           LLRP + ++  GQ       + L+V  E        L H  F GP G GKT++A+++A+ 
Sbjct: 6   LLRPNSFDDLVGQEHLSAQNAPLRVLCE-----KYTLGHSFFYGPAGCGKTSIARIIAKT 60

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLE---DRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           + + F   +   I K   L  +    +    + +LFIDE+HRL+   +E+L P ME+  +
Sbjct: 61  MDLPFYEFNATSI-KIEQLRKIFEQYKNALQKPLLFIDEVHRLAKNQQEVLLPVMENNSV 119

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
            L++G                          LT+ ++ R  +   L   + E L +++ +
Sbjct: 120 -LIIGASTENPFFS-----------------LTSAIRSRS-MLFELKHIKNEALLSLLDK 160

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
             K   L    +A   +   S G  R   +LL      + +    T+    +       A
Sbjct: 161 ALKYADLDCETDAKEYLIASSGGDARAMLKLLEFA---SSIDTTITMHLLKSLRPNALSA 217

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ--GFIQR 312
                    DL                    SA +   R +  D    Y+ +   G    
Sbjct: 218 GSSEAGVHYDLA-------------------SALIKSIRGSDADAAIYYLARLIDGGESA 258

Query: 313 TPRGRLLMPIAWQHLGIDIPH 333
               R L+ +A + +G   P 
Sbjct: 259 DFIARRLVILASEDVGNANPQ 279


>gi|308061773|gb|ADO03661.1| recombination factor protein RarA [Helicobacter pylori Cuz20]
          Length = 391

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 73/319 (22%), Positives = 115/319 (36%), Gaps = 49/319 (15%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           SLL P++LE+F GQ           +A +++     H  F GPPG+GKT+LAQ++AR L 
Sbjct: 5   SLLNPKSLEDFLGQEHLIGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIARMLE 62

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
                 +     K  DL   L N ++   + V+FIDE HRL+   +E L P ME     L
Sbjct: 63  RPILLFNATDF-KLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDH-AL 120

Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA 196
           ++G      +                   L++ ++ R  I   L      DL  +  +  
Sbjct: 121 ILGASTQDPN-----------------YSLSHAIRSRSFI-FELTPLNKSDLDKLCTKAL 162

Query: 197 KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAID 256
            L    +   A   +   S G  R    LL              IT E   +       D
Sbjct: 163 TLLKKQIEPSAKTYLLNNSAGDARALLNLLDL-----SAKIEDPITLETLQSLRPHSLND 217

Query: 257 KMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR- 315
               D       + + ++  G            S+   +I      Y+ +       P  
Sbjct: 218 GSYSDDTHYNLTSALIKSLRG------------SDENASI-----YYLARLIAGGENPEF 260

Query: 316 -GRLLMPIAWQHLGIDIPH 333
             R L+  A + +G   P+
Sbjct: 261 IARRLVVFASEDIGNANPN 279


>gi|302417888|ref|XP_003006775.1| ATPase WRNIP1 [Verticillium albo-atrum VaMs.102]
 gi|261354377|gb|EEY16805.1| ATPase WRNIP1 [Verticillium albo-atrum VaMs.102]
          Length = 458

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 58/325 (17%), Positives = 102/325 (31%), Gaps = 51/325 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+ L++  GQ        V     +   + +  ++  G  G GKTT+A+ +A 
Sbjct: 160 PLAERMRPQALDDVFGQD-LVGPHGVLRSLIET--DRVPSMILWGGSGTGKTTIARCIAH 216

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAM 129
             G  F   +        ++  +             + ++F DEIHR +   +++    +
Sbjct: 217 RAGSRFIELNA-TSTGVAEVKKMFLEAANDLALTGRKTIIFCDEIHRFTKAQQDVFLKPV 275

Query: 130 EDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           E   + L+    E PS R     LSR                                E+
Sbjct: 276 EAGTITLVGATTENPSFRVGAALLSRCRTFTL---------------------QKLSAEN 314

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           +  I++R               + A         A  LL  +  FA+          + +
Sbjct: 315 IAAILRRAVAAECPGGPPPLLSDGAN--------ADHLLTYLAAFAD--GDARTALNLLE 364

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM--- 304
            AL   A      D L       +      G    +TISA         E    P     
Sbjct: 365 LALSLAARPDTTMDDLKASLTKTLV-YDRAGDQHYDTISAFHKAMGFGAEYKYPPNYRDG 423

Query: 305 -IQQGFIQRTPRGRLLMPIAWQHLG 328
            ++Q ++    +GR  +    +HLG
Sbjct: 424 KVRQDYLPEGMQGRRFLED--RHLG 446


>gi|255725414|ref|XP_002547636.1| predicted protein [Candida tropicalis MYA-3404]
 gi|240135527|gb|EER35081.1| predicted protein [Candida tropicalis MYA-3404]
          Length = 498

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 59/232 (25%), Positives = 97/232 (41%), Gaps = 18/232 (7%)

Query: 20  SLLRPRTLEEFTGQVEAC--SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
             +RP T EE+ GQ       N  +F      +   L  ++F+GPPG+GKTTLA V++ E
Sbjct: 29  EAIRPTTFEEYVGQDHLLNQQNGSIFT---FIKLGYLPSMIFLGPPGVGKTTLASVISYE 85

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
             + F   S   +   G+L  +    E++ V+FIDEIHRL+ + ++ L P +E+ ++ L+
Sbjct: 86  CKLPFIELSATTLT-TGELKQIAMMHEEQIVVFIDEIHRLTKVQQDWLLPYVENGKMVLI 144

Query: 138 --VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
                 PS R     LSR  +                   I  +   Y+    K ++   
Sbjct: 145 GATTSHPSKRIRHAILSRCHVFCLRRLATPELQ------IILRKAIKYQNLKRKHVL--- 195

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
             L  +         I   + G  RIA  L+  + +         I+ +  D
Sbjct: 196 -NLPEIDYDQVCEDLILELAHGDSRIAINLVELISNNYSQTDDGRISLKNHD 246


>gi|294655887|ref|XP_458100.2| DEHA2C09570p [Debaryomyces hansenii CBS767]
 gi|199430686|emb|CAG86171.2| DEHA2C09570p [Debaryomyces hansenii]
          Length = 842

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 61/264 (23%), Positives = 97/264 (36%), Gaps = 28/264 (10%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           +R  L S+ +        ++RP++L E  GQ    +N    I+    R   L  ++  GP
Sbjct: 144 ERRRLDSK-IFDNIPLFEVIRPKSLNEVIGQTHLINNHNGTIKN-FIRLGYLPSMILHGP 201

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------------RDVL 109
           PG+GKT++A ++A+E G  F   S    A   DL  L   +E              R V+
Sbjct: 202 PGVGKTSIASILAQETGYVFVEFSA-TDATVSDLKELSITIEKENRKRSKKDMEYLRVVV 260

Query: 110 FIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           FIDEIHR +   ++ L P +E      +      P  R  +  +SR  +           
Sbjct: 261 FIDEIHRFTKTQQDFLLPFIESGVFTFIGATTLKPETRIRRAIISRCQIFQLKALESYEI 320

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
           +       +  +   YE    + +      L  L   DE    +  RS G  R A  L+ 
Sbjct: 321 D------IVIHKAILYENIRRRILRN----LRSLFYDDECLNLLIRRSNGDTRAAVNLVE 370

Query: 228 RVRDFAEVAHAKTITREIADAALL 251
            V     +        +     L 
Sbjct: 371 LVSTHYNIDDLAYEAEKHESFVLN 394


>gi|317180683|dbj|BAJ58469.1| recombination factor protein RarA [Helicobacter pylori F32]
          Length = 391

 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 76/321 (23%), Positives = 115/321 (35%), Gaps = 53/321 (16%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           SLL P++LE+F GQ           +A +++     H  F GPPG+GKT+LAQ++AR L 
Sbjct: 5   SLLNPKSLEDFLGQEHLIGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIARMLE 62

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
                 +     K  DL   L N +    + V+FIDE HRL+   +E L P ME     L
Sbjct: 63  RPILLFNATDF-KLEDLRLKLKNYQHTLLKPVVFIDETHRLNKTQQEFLLPIMEKDH-AL 120

Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA 196
           ++G      +                   L++ ++ R  I   L      DL  +  +  
Sbjct: 121 ILGASTQDPN-----------------YSLSHAIRSRSFI-FELTPLNKSDLDKLCAKAL 162

Query: 197 KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAID 256
            L    +   A   +   S G  R    LL           +  I   I    L  L   
Sbjct: 163 TLLKKQIEPSAKTYLLNNSAGDARALLNLLDL---------SAKIENPITLKTLQSLRPH 213

Query: 257 KM--GFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
            +  G    D  Y                  SA +   R + E+    Y+ +       P
Sbjct: 214 SLNDGSHSDDTHYNLT---------------SALIKSLRGSDENASIYYLARLIAGGENP 258

Query: 315 R--GRLLMPIAWQHLGIDIPH 333
               R L+  A + +G   P+
Sbjct: 259 EFIARRLVIFASEDIGNANPN 279


>gi|307637117|gb|ADN79567.1| ATPase [Helicobacter pylori 908]
 gi|325995708|gb|ADZ51113.1| ATPase [Helicobacter pylori 2018]
 gi|325997304|gb|ADZ49512.1| putative recombination factor protein [Helicobacter pylori 2017]
          Length = 391

 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 75/321 (23%), Positives = 115/321 (35%), Gaps = 53/321 (16%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +LL P +LE+F GQ           +A +++     H  F GPPG+GKT+LAQ++AR L 
Sbjct: 5   ALLNPTSLEDFLGQEHLIGKDTPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIARSLE 62

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
               S +     K  DL   L N ++   + V+FIDE HRL+   +E L P ME     L
Sbjct: 63  RPILSFNATDF-KLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDH-AL 120

Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA 196
           ++G      +                   L++ ++ R  I   L      DL  +  +  
Sbjct: 121 ILGASTQDPN-----------------YSLSHAIRSRSFI-FELTPLNKSDLDRLCDKAL 162

Query: 197 KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAID 256
            L    +   A   +   S G  R    LL           +  I   I    L  L   
Sbjct: 163 ALLKKQIESGAKTYLLNNSTGDARALLNLLDL---------SAKIENPITLKTLQSLRPH 213

Query: 257 KMGFDQL--DLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
            +       D  Y                  SA +   R + E+    Y+ +       P
Sbjct: 214 SLNDGSYSDDTHYNLT---------------SALIKSLRGSDENASIYYLARLIAGGENP 258

Query: 315 R--GRLLMPIAWQHLGIDIPH 333
               R L+  A + +G   P+
Sbjct: 259 EFIARRLVIFASEDIGNANPN 279


>gi|78219446|gb|ABB38795.1| Recombination protein MgsA [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 375

 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 71/289 (24%), Positives = 109/289 (37%), Gaps = 54/289 (18%)

Query: 51  AEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLF 110
           A  L  +LF GPPG GK+T+A ++AR  G  +   S P       L  L  +L    +L 
Sbjct: 3   ASRLPSLLFFGPPGCGKSTIALLLARNTGQKYIRISAPEAG----LQQLRKSLAGVRILV 58

Query: 111 IDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +DE+HR S   ++   P +E  ++ L+    E PS    +  LSR  ++           
Sbjct: 59  LDELHRFSKAQQDFFLPVLESGEVTLLASTTENPSFSVTRQLLSRMHVLRLKPLAHS--- 115

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
                             DL T+ +RGA+  G A+ D+    +A  + G  R    L+  
Sbjct: 116 ------------------DLLTLARRGAEAQGAALKDDVCEMLATVAHGDARTLLNLVEY 157

Query: 229 VRDFAEVAHAKTITREIADAAL--LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETIS 286
           V    E    +  T E   AAL  L +  DK G    ++                    S
Sbjct: 158 VAGLPE----EKQTPEAVKAALPELVMRHDKDGDSHYEIA-------------------S 194

Query: 287 AGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           A +   R +  D    Y+         PR   R L+  A + +G+  P 
Sbjct: 195 ALIKSIRGSDPDAALYYLACLLEGGEDPRFICRRLILSASEDIGLADPQ 243


>gi|149240319|ref|XP_001526035.1| hypothetical protein LELG_02593 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146450158|gb|EDK44414.1| hypothetical protein LELG_02593 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 516

 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 72/284 (25%), Positives = 109/284 (38%), Gaps = 21/284 (7%)

Query: 1   MMDREGLLSRNVSQ---EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           M   E  +S  V+    E +    +RP TL  + GQ    +  K  I A   R   L  +
Sbjct: 1   MTIEEETVSTQVADNGLELSLSEAVRPNTLANYVGQRHLLNEEKG-IFANYIRMGYLPSM 59

Query: 58  LFVGPPGLGKTTLAQVVARELGV--NFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIH 115
           L +GPPG GKTTLA++VA+  G   +             ++  L+ + +++ V+FIDEIH
Sbjct: 60  LLIGPPGSGKTTLARLVAKSCGYATSNIIELSATTLTTENIKNLVNDCQEQLVVFIDEIH 119

Query: 116 RLSIIVEEILYPAMEDFQLDLM---VGEGPSARSVKINLSRFTLIAATTR-VGLLTNPLQ 171
           RLS + ++ L P +ED ++ L+     E P  R  K  LSR  +          L + L 
Sbjct: 120 RLSKVQQDWLLPFVEDGKIVLIGATTLETPLRRIRKAILSRCQVFPLQRLHDDELLSVLH 179

Query: 172 DRFGIPIRLNFYEIEDLKTIVQ--------RGAKLTGLAVTDEAACEIAMRSRGTPRIAG 223
                  +       +                +K   L  +D A   I     G  R A 
Sbjct: 180 SAIDFENQRRSRRSRNNNNTNNDREELGKAETSKSGELKFSDNALLGIVRAVNGDIRAAI 239

Query: 224 RLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRY 267
             + RV    +  H   IT    +  L        G   L+  Y
Sbjct: 240 NTIERVSHTFKTGHDHKITSAEMNLILK---THTRGQTHLNELY 280


>gi|149196409|ref|ZP_01873464.1| ATPase, AAA family protein [Lentisphaera araneosa HTCC2155]
 gi|149140670|gb|EDM29068.1| ATPase, AAA family protein [Lentisphaera araneosa HTCC2155]
          Length = 430

 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 53/329 (16%), Positives = 104/329 (31%), Gaps = 51/329 (15%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +   + LRP    +F GQ    +   +   + +   +    ++F GPPG GKT+LA +++
Sbjct: 10  EPLAATLRPEGFGDFFGQGHLTAEGSLLRRSIE--NDCFSSIIFTGPPGTGKTSLASIIS 67

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPA 128
           +    +F + S  + +   ++   +            + VLF+DEIHR +   ++ L   
Sbjct: 68  KHTEADFIALSA-IDSSVSEVRKAVKAADEARKFSGRKTVLFVDEIHRFNKAQQDSLLKD 126

Query: 129 MEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           +E+  +  +      P         SR  +             L              +E
Sbjct: 127 IENGTVRFIGATTHNPGFYLTPALCSRSLIFTLKPLEASAVKSL--------------LE 172

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
              T + +  +   L   +E    ++    G  R A  ++      A+   +  I  E  
Sbjct: 173 AKMTKIMKALEA-ELQFDEEGLKFLSENCEGDARRALTVIELAVKTAQ---SDKIGLEEL 228

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
              L   +                               SA +   R +  D    ++  
Sbjct: 229 RECLQVKSYKYDADAHY-------------------NAASAFIKSMRGSDPDAAVYWLAY 269

Query: 307 QGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                   R   R +M  A + +G   P 
Sbjct: 270 MLEAGEDIRFIARRIMIFASEDVGNADPR 298


>gi|148377334|ref|YP_001256210.1| recombination factor protein RarA [Mycoplasma agalactiae PG2]
 gi|148291380|emb|CAL58764.1| ATPase, AAA family [Mycoplasma agalactiae PG2]
          Length = 404

 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 67/322 (20%), Positives = 113/322 (35%), Gaps = 59/322 (18%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
            + LRP+TL++  GQ      LK       AR +     +F G  G GKT+ A  +A +L
Sbjct: 5   ANELRPKTLDDIIGQKSVVELLKKV-----ARDKIYSSFIFFGESGTGKTSAAVALANDL 59

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM- 137
           G+ +   +  V +K    A L+  L D DVL IDEIHRL+   ++IL   +E  ++ +  
Sbjct: 60  GLKYDYFNASVNSK----AELIKMLADNDVLIIDEIHRLNKDKQDILLSYLEFDKIIIYA 115

Query: 138 -VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA 196
              E P  R      SR  ++  T              GI   L  Y  +          
Sbjct: 116 TTTENPYFRVNPALRSRMQILQFTKLSEQEMF-----EGIKHNLKKYFPDY--------- 161

Query: 197 KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAID 256
                 + +         S G  R     L+ +   ++         +      +    D
Sbjct: 162 -----QMDESTIKVFVKLSNGDYRSCLNNLQILTLMSKNKQISLDDIKKFVP-NISFYSD 215

Query: 257 KMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY---MIQQGFIQRT 313
           +                           +SA     R +  D    Y   +++ G +Q  
Sbjct: 216 ENSSAHY-------------------NNLSAFHKSLRGSDVDAALYYGAIIVKSGDLQ-- 254

Query: 314 PRG--RLLMPIAWQHLGIDIPH 333
             G  R L+  +++ +G+  P+
Sbjct: 255 --GLFRRLIACSYEDVGLADPN 274


>gi|217031651|ref|ZP_03437156.1| hypothetical protein HPB128_21g209 [Helicobacter pylori B128]
 gi|298736639|ref|YP_003729165.1| recombination factor protein RarA [Helicobacter pylori B8]
 gi|216946851|gb|EEC25447.1| hypothetical protein HPB128_21g209 [Helicobacter pylori B128]
 gi|298355829|emb|CBI66701.1| recombination factor protein RarA [Helicobacter pylori B8]
          Length = 391

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 73/319 (22%), Positives = 116/319 (36%), Gaps = 49/319 (15%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           SLL P++LE+F GQ           +A +++     H  F GPPG+GKT+LAQ++AR L 
Sbjct: 5   SLLNPKSLEDFLGQEHLVGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIARSLE 62

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
                 +     K  DL   L N ++   + V+FIDE HRL+   +E L P ME     L
Sbjct: 63  RPILLFNATDF-KLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDH-AL 120

Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA 196
           ++G      +                   L++ ++ R  I   L   +  DL  +  +  
Sbjct: 121 ILGASTQDPN-----------------YSLSHAIRSRSFI-FELTPLKKSDLDKLCAKAL 162

Query: 197 KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAID 256
            L    +   A   +   S G  R    LL              IT E   +       D
Sbjct: 163 TLLKKQIEPGAKTYLLNSSAGDARALLNLLDL-----SAKVEDPITLETLQSLRPHSLND 217

Query: 257 KMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR- 315
               D       + + ++  G            S+   +I      Y+ +       P  
Sbjct: 218 GSYSDDTHYNLASALIKSLRG------------SDENASI-----YYLARLIAGGENPEF 260

Query: 316 -GRLLMPIAWQHLGIDIPH 333
             R L+  A + +G   P+
Sbjct: 261 IARRLVIFASEDIGNANPN 279


>gi|317179185|dbj|BAJ56973.1| recombination factor protein RarA [Helicobacter pylori F30]
          Length = 391

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 73/319 (22%), Positives = 115/319 (36%), Gaps = 49/319 (15%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           SLL P++LE+F GQ           +A +++     H  F GPPG+GKT+LAQ++AR L 
Sbjct: 5   SLLNPKSLEDFLGQEHLIGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIARMLE 62

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
                 +     K  DL   L N ++   + V+FIDE HRL+   +E L P ME     L
Sbjct: 63  RPILLFNATDF-KLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDH-AL 120

Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA 196
           ++G      +                   L++ ++ R  I   L      DL  +  +  
Sbjct: 121 ILGASTQDPN-----------------YSLSHAIRSRSFI-FELTPLNKSDLDKLCAKAL 162

Query: 197 KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAID 256
            L    +   A   +   S G  R    LL              IT E   +       D
Sbjct: 163 TLLKKQIEPSAKTYLLNNSAGDARALLNLLDL-----SAKIEDPITLETLQSLRPHSLND 217

Query: 257 KMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR- 315
               D       + + ++  G            S+   +I      Y+ +       P  
Sbjct: 218 GSYSDDTHYNLTSALIKSLRG------------SDENASI-----YYLARLIAGGENPEF 260

Query: 316 -GRLLMPIAWQHLGIDIPH 333
             R L+  A + +G   P+
Sbjct: 261 IARRLVVFASEDIGNANPN 279


>gi|207092026|ref|ZP_03239813.1| recombination factor protein RarA [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 367

 Score =  109 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 72/319 (22%), Positives = 115/319 (36%), Gaps = 49/319 (15%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           SLL P++LE+F GQ           +A +++     H  F GPPG+GKT+LAQ++A  L 
Sbjct: 5   SLLNPKSLEDFLGQEHLVGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIACMLE 62

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
                 +     K  DL   L N ++   + V+FIDE HRL+   +E L P ME     L
Sbjct: 63  RPILLFNATDF-KLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKNH-AL 120

Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA 196
           ++G      +                   L++ ++ R  I   L   +  DL  +  +  
Sbjct: 121 ILGASTQDPN-----------------YSLSHAIRSRSFI-FELTPLKKSDLDKLCAKAL 162

Query: 197 KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAID 256
            L    +   A   +   S G  R    LL              IT E   +       D
Sbjct: 163 ALLKKQIEPGAKTYLLNNSAGDARALLNLLDL-----SAKIENPITLETLQSLRPHSLND 217

Query: 257 KMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR- 315
               D       + + ++  G            S+   +I      Y+ +       P  
Sbjct: 218 GSYSDDTHYNLTSALIKSLRG------------SDENASI-----YYLARLIAGGENPEF 260

Query: 316 -GRLLMPIAWQHLGIDIPH 333
             R L+  A + +G   P+
Sbjct: 261 IARRLVIFASEDIGNANPN 279


>gi|261837854|gb|ACX97620.1| hypothetical protein KHP_0409 [Helicobacter pylori 51]
          Length = 391

 Score =  109 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 73/319 (22%), Positives = 115/319 (36%), Gaps = 49/319 (15%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           SLL P++LE+F GQ           +A +++     H  F GPPG+GKT+LAQ++AR L 
Sbjct: 5   SLLNPKSLEDFLGQEHLIGKDTPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIARMLE 62

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
                 +     K  DL   L N ++   + V+FIDE HRL+   +E L P ME     L
Sbjct: 63  RPILLFNATDF-KLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDH-AL 120

Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA 196
           ++G      +                   L++ ++ R  I   L      DL  +  +  
Sbjct: 121 ILGASTQDPN-----------------YSLSHAIRSRSFI-FELTPLNKSDLDKLCAKAL 162

Query: 197 KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAID 256
            L    +   A   +   S G  R    LL              IT E   +       D
Sbjct: 163 TLLKKQIEPSAKTYLLNNSAGDARALLNLLDL-----SAKIEDPITLETLQSLRPHSLND 217

Query: 257 KMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR- 315
               D       + + ++  G            S+   +I      Y+ +       P  
Sbjct: 218 GSYSDDTHYNLTSALIKSLRG------------SDENASI-----YYLARLIAGGENPEF 260

Query: 316 -GRLLMPIAWQHLGIDIPH 333
             R L+  A + +G   P+
Sbjct: 261 IARRLVVFASEDIGNANPN 279


>gi|188527230|ref|YP_001909917.1| recombination factor protein RarA [Helicobacter pylori Shi470]
 gi|188143470|gb|ACD47887.1| recombination factor protein RarA [Helicobacter pylori Shi470]
          Length = 391

 Score =  109 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 73/319 (22%), Positives = 115/319 (36%), Gaps = 49/319 (15%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           SLL P++LE+F GQ           +A +++     H  F GPPG+GKT+LAQ++AR L 
Sbjct: 5   SLLNPKSLEDFLGQEHLIGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIARMLE 62

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
                 +     K  DL   L N ++   + V+FIDE HRL+   +E L P ME     L
Sbjct: 63  RPILLFNATDF-KLEDLRLKLKNYQNTLLKPVIFIDETHRLNKTQQEFLLPIMEKDH-AL 120

Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA 196
           ++G      +                   L++ ++ R  I   L      DL  +  +  
Sbjct: 121 ILGASTQDPN-----------------YSLSHAIRSRSFI-FELTPLNKSDLDKLCAKAL 162

Query: 197 KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAID 256
            L    +   A   +   S G  R    LL              IT E   +       D
Sbjct: 163 TLLKKQIEPGAKTYLLNNSAGDARALLNLLDL-----SAKIEDPITLETLQSLRPHSLND 217

Query: 257 KMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR- 315
               D       + + ++  G            S+   +I      Y+ +       P  
Sbjct: 218 GSYSDDTHYNLTSALIKSLRG------------SDENASI-----YYLARLIAGGENPEF 260

Query: 316 -GRLLMPIAWQHLGIDIPH 333
             R L+  A + +G   P+
Sbjct: 261 IARRLVVFASEDIGNANPN 279


>gi|317177233|dbj|BAJ55022.1| recombination factor protein RarA [Helicobacter pylori F16]
          Length = 391

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 73/319 (22%), Positives = 115/319 (36%), Gaps = 49/319 (15%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           SLL P++LE+F GQ           +A +++     H  F GPPG+GKT+LAQ++AR L 
Sbjct: 5   SLLNPKSLEDFLGQEHLIGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIARMLE 62

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
                 +     K  DL   L N ++   + V+FIDE HRL+   +E L P ME     L
Sbjct: 63  RPILLFNATDF-KLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDH-AL 120

Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA 196
           ++G      +                   L++ ++ R  I   L      DL  +  +  
Sbjct: 121 ILGASTQDPN-----------------YSLSHAIRSRSFI-FELTPLNKSDLDKLCAKAL 162

Query: 197 KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAID 256
            L    +   A   +   S G  R    LL              IT E   +       D
Sbjct: 163 TLLKKQIEPSAKTYLLNNSAGDARALLNLLDL-----SAKIENPITLETLQSLRPHSPND 217

Query: 257 KMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR- 315
               D       + + ++  G            S+   +I      Y+ +       P  
Sbjct: 218 GSYSDDTHYNLTSALIKSLRG------------SDENASI-----YYLARLIAGGENPEF 260

Query: 316 -GRLLMPIAWQHLGIDIPH 333
             R L+  A + +G   P+
Sbjct: 261 IARRLVVFASEDIGNANPN 279


>gi|315586413|gb|ADU40794.1| crossover junction endodeoxyribonuclease ATPase [Helicobacter
           pylori 35A]
          Length = 391

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 73/319 (22%), Positives = 115/319 (36%), Gaps = 49/319 (15%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           SLL P++LE+F GQ           +A +++     H  F GPPG+GKT+LAQ++AR L 
Sbjct: 5   SLLNPKSLEDFLGQEHLIGKDTPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIARMLE 62

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
                 +     K  DL   L N ++   + V+FIDE HRL+   +E L P ME     L
Sbjct: 63  RPILLFNATDF-KLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDH-AL 120

Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA 196
           ++G      +                   L++ ++ R  I   L      DL  +  +  
Sbjct: 121 ILGASTQDPN-----------------YSLSHAIRSRSFI-FELTPLNKSDLDKLCAKAL 162

Query: 197 KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAID 256
            L    +   A   +   S G  R    LL              IT E   +       D
Sbjct: 163 ILLKKQIEPSAKTYLLNNSAGDARALLNLLDL-----SAKIEDPITLETLQSLRPHSLND 217

Query: 257 KMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR- 315
               D       + + ++  G            S+   +I      Y+ +       P  
Sbjct: 218 GSYSDDTHYNLTSALIKSLRG------------SDENASI-----YYLARLIAGGENPEF 260

Query: 316 -GRLLMPIAWQHLGIDIPH 333
             R L+  A + +G   P+
Sbjct: 261 IARRLVIFASEDIGNANPN 279


>gi|148983663|ref|ZP_01816982.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           SP3-BS71]
 gi|147923810|gb|EDK74922.1| Holliday junction DNA helicase RuvB [Streptococcus pneumoniae
           SP3-BS71]
          Length = 83

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 33/83 (39%), Positives = 52/83 (62%)

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
            L +D  G D +D + L  +   + GGPVG+ T+S  ++E R+ +ED+ EPY+IQ+GFI 
Sbjct: 1   MLDVDHEGLDYVDQKILRTMIEMYSGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIM 60

Query: 312 RTPRGRLLMPIAWQHLGIDIPHR 334
           RT  GR+    A++HLG +   +
Sbjct: 61  RTRSGRVATAKAYEHLGYEYSEK 83


>gi|108562846|ref|YP_627162.1| recombination factor protein RarA [Helicobacter pylori HPAG1]
 gi|107836619|gb|ABF84488.1| conserved hypothetical helicase-like protein [Helicobacter pylori
           HPAG1]
          Length = 391

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 74/321 (23%), Positives = 116/321 (36%), Gaps = 53/321 (16%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           SLL P++LE+F GQ           +A +++     +  F GPPG+GKT+LAQ++AR L 
Sbjct: 5   SLLNPKSLEDFLGQEHLIGKDAPLFKALQSKH--FPNAFFYGPPGVGKTSLAQIIARSLE 62

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
               S +     K  DL   L N ++   + V+FIDE HRL+   +E L P ME     L
Sbjct: 63  RPILSFNATDF-KLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDH-AL 120

Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA 196
           ++G      +                   L++ ++ R      L      DL  +  +  
Sbjct: 121 ILGASTQDPN-----------------YSLSHAIRSRS-FTFELTPLNKSDLDKLCDKAL 162

Query: 197 KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAID 256
            L    +  +A   +   S G  R    LL           +  I   I    L  L   
Sbjct: 163 ALLKKQIEPDAKTYLLNNSAGDARALLNLLDL---------SAKIENPITLKTLQSLRPH 213

Query: 257 KMGFDQL--DLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
            +       D  Y                  SA +   R + E+    Y+ +       P
Sbjct: 214 SLNDGSYSDDTHYNLT---------------SALIKSLRGSDENASIYYLARLIAGGENP 258

Query: 315 R--GRLLMPIAWQHLGIDIPH 333
               R L+  A + +G   P+
Sbjct: 259 EFIARRLVIFASEDIGNANPN 279


>gi|218660348|ref|ZP_03516278.1| Holliday junction DNA helicase RuvB [Rhizobium etli IE4771]
          Length = 110

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 66/112 (58%), Positives = 79/112 (70%), Gaps = 2/112 (1%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M +   L+S     ED D++ LRP++L+EFTGQ EA +NLK+FIEAAK R EALDHVLFV
Sbjct: 1   MSEPARLISPEKRGEDLDVT-LRPQSLDEFTGQAEARANLKIFIEAAKNRGEALDHVLFV 59

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID 112
           GPPGLGKTTLAQ++A+ELGVNFRSTS                  +RDVLFID
Sbjct: 60  GPPGLGKTTLAQIMAKELGVNFRSTSALSSPSRR-SRRAADQSRERDVLFID 110


>gi|260945583|ref|XP_002617089.1| hypothetical protein CLUG_02533 [Clavispora lusitaniae ATCC 42720]
 gi|238848943|gb|EEQ38407.1| hypothetical protein CLUG_02533 [Clavispora lusitaniae ATCC 42720]
          Length = 548

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 60/288 (20%), Positives = 105/288 (36%), Gaps = 40/288 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
               ++RP +L+++ GQ     +    I +       L  ++  GPPG+GKTTLA ++A 
Sbjct: 18  PLQEIIRPSSLKDYVGQEHLIDSDDGAISSFLTLG-ILPSMILYGPPGVGKTTLAHILAA 76

Query: 77  ELGVNFRSTSGPVIAKAGDLA----ALLTNLEDRD---------VLFIDEIHRLSIIVEE 123
           E    F   S    +  GD+     A+      RD         V+FIDEIHR S   ++
Sbjct: 77  ETNHVFLELSA-TDSTIGDMREISQAIRQENGKRDRSGDLHLKVVVFIDEIHRFSTTQQD 135

Query: 124 ILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
            L P +E      +      P  R  +  LSR  L +              +  I   + 
Sbjct: 136 FLLPFVEAGDFVFIGATTVNPEKRIRRAILSRCQLFSLR------------KLDIQHIVK 183

Query: 182 FYEIEDLKTIVQRG--AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD-------- 231
             +   L   ++R     L  +  + EA   +A  + G  R A   +  +          
Sbjct: 184 VLQKASLHENIRRKKLKGLKFIQYSTEAFQLVASYANGDTRSAINFIELISSRMEGDDWL 243

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLR-YLTMIARNFGGG 278
            +E  + K +   +    +  L   ++G    +    +  +  +  GG
Sbjct: 244 LSENEYKKPVDIHVVQETINSLTKVRLGLQHQENEPIVAALFDSMNGG 291


>gi|162447688|ref|YP_001620820.1| Holliday junction DNA helicase-like ATPase [Acholeplasma laidlawii
           PG-8A]
 gi|161985795|gb|ABX81444.1| Holliday junction DNA helicase-like ATPase [Acholeplasma laidlawii
           PG-8A]
          Length = 412

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 65/319 (20%), Positives = 119/319 (37%), Gaps = 41/319 (12%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +   S +RP+  +E  GQ    S   V  +  + +       +  GPPG GKTT+A++ +
Sbjct: 2   EPLASRMRPKNFDEVYGQDHLLSKHGVLTKMIEKKKYL--SFILYGPPGTGKTTIAKLFS 59

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFI-DEIHRLSIIVEEILYPAMEDFQL 134
            +  ++    +     KA  L  +L      DVL I DEIHR+   +++ L P +E  + 
Sbjct: 60  DKSMLDTYFFNASTDNKAK-LKDILDMTAYHDVLIIVDEIHRMKTDIQDYLLPFLESGK- 117

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
            +M+G         IN+                  ++ R  +       + +    I+  
Sbjct: 118 AIMIGLTTLNPYQSINM-----------------AIRSRCHLYEIKALSDKDIEAAILNA 160

Query: 195 GAKLTG-LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
              L   + +TD+A   I   S    R A  LL       +     T       A   +L
Sbjct: 161 IQYLDHDIHLTDDALAAIIRASNSEIRSALNLLESASLVVDDGQKITSNIIRKLAGKPQL 220

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
           ++D    +      L+ + ++  G  V              +I  L    ++  G ++  
Sbjct: 221 SLDDH--ENHYFEMLSALQKSIRGSDVDA------------SIHYLAR--LLTLGDLEII 264

Query: 314 PRGRLLMPIAWQHLGIDIP 332
              R L+ IA++ +G+  P
Sbjct: 265 F--RRLIVIAYEDIGLANP 281


>gi|217033284|ref|ZP_03438715.1| hypothetical protein HP9810_9g37 [Helicobacter pylori 98-10]
 gi|216944225|gb|EEC23650.1| hypothetical protein HP9810_9g37 [Helicobacter pylori 98-10]
          Length = 391

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 72/319 (22%), Positives = 114/319 (35%), Gaps = 49/319 (15%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           SLL P++LE+F GQ           +A +++     H  F GPPG+GKT+LAQ++A  L 
Sbjct: 5   SLLNPKSLEDFLGQEHLIGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIACMLE 62

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
                 +     K  DL   L N ++   + V+FIDE HRL+   +E L P ME     L
Sbjct: 63  RPILLFNATDF-KLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDH-AL 120

Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA 196
           ++G      +                   L++ ++ R  I   L      DL  +  +  
Sbjct: 121 ILGASTQDPN-----------------YSLSHAIRSRSFI-FELTPLNKSDLDKLCAKAL 162

Query: 197 KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAID 256
            L    +   A   +   S G  R    LL              IT E   +       D
Sbjct: 163 TLLKKQIEPSAKTYLLNNSAGDARALLNLLDL-----SAKIEDPITLETLQSLRPHSLND 217

Query: 257 KMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR- 315
               D       + + ++  G            S+   +I      Y+ +       P  
Sbjct: 218 GSYSDDTHYNLTSALIKSLRG------------SDENASI-----YYLARLIAGGENPEF 260

Query: 316 -GRLLMPIAWQHLGIDIPH 333
             R L+  A + +G   P+
Sbjct: 261 IARRLVVFASEDIGNANPN 279


>gi|291287827|ref|YP_003504643.1| AAA ATPase central domain protein [Denitrovibrio acetiphilus DSM
           12809]
 gi|290884987|gb|ADD68687.1| AAA ATPase central domain protein [Denitrovibrio acetiphilus DSM
           12809]
          Length = 426

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 60/323 (18%), Positives = 109/323 (33%), Gaps = 46/323 (14%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +  LRPR  ++  GQ        VF +  +      D V+ VGPPG GKTTLA+++ + L
Sbjct: 4   LEELRPRAFDDIAGQKHLIGVDSVFRKMVEDGG--FDSVVLVGPPGTGKTTLAEIIGKHL 61

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLE--DRDV-LFIDEIHRLSIIVEEILYPAMEDFQLD 135
            + + S      A +GDL  ++ +     + V +F+DE+HR +   + +L   ++     
Sbjct: 62  NMPYFSLHAAT-AGSGDLKQIMESARHAGKTVLVFVDELHRFNKTQQVLLLNMIDSGLAK 120

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           L+    E P    ++   SR  +             L ++  +  +  +           
Sbjct: 121 LIGASTENPYHNLIQPLRSRSFVFRLERLEKPDLKELFEKVKLYFKERY----------- 169

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
              K   +  TD+    +   S G  R    +L              +       AL   
Sbjct: 170 ---KADDVVCTDDEFDRLVKASDGDGRRFLSVLELSAVNGSFKDD--VLHLGVSKALEHT 224

Query: 254 AIDKMGFD-QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
              +   D   D   L+ + ++  G                    D    +  +      
Sbjct: 225 TDSRYNADEHYD--MLSAMIKSIRG-----------------TDPDAAALWCFRLLECGM 265

Query: 313 TPRG--RLLMPIAWQHLGIDIPH 333
            P    R L+  A + +G   P 
Sbjct: 266 EPEAIFRRLLISASEDIGNAFPD 288


>gi|254779113|ref|YP_003057218.1| recombination factor protein RarA [Helicobacter pylori B38]
 gi|254001024|emb|CAX28968.1| Putative ATPase, AAA+ superfamily [Helicobacter pylori B38]
          Length = 391

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 73/321 (22%), Positives = 115/321 (35%), Gaps = 53/321 (16%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +LL P++LE+F GQ           +A +++     H  F GPPG+GKT+LAQ++A  L 
Sbjct: 5   ALLNPKSLEDFLGQEHLIGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIACMLE 62

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
                 +     K  DL   L N ++   + V+FIDE HRL+   +E L P ME     L
Sbjct: 63  RPILLFNATDF-KLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDH-AL 120

Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA 196
           ++G      +                   L++ ++ R  I   L   +  DL  +  +  
Sbjct: 121 ILGASTQDPN-----------------YSLSHAIRSRSFI-FELTHLKKSDLDKLCAKAL 162

Query: 197 KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAID 256
            L    +   A   +   S G  R    LL           +  I   I    L  L   
Sbjct: 163 ALLKKQIEPSAKTYLLNNSAGDARALLNLLDL---------SAKIEDPITLKTLQSLRPH 213

Query: 257 KMGFDQL--DLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
            +       D  Y                  SA +   R + E+    Y+ +       P
Sbjct: 214 SLNDGSYSDDTHYNLT---------------SALIKSLRGSDENASIYYLARLIAGGENP 258

Query: 315 R--GRLLMPIAWQHLGIDIPH 333
               R L+  A + +G   P+
Sbjct: 259 EFIARRLVIFASEDIGNANPN 279


>gi|15645640|ref|NP_207816.1| recombination factor protein RarA [Helicobacter pylori 26695]
 gi|2314168|gb|AAD08068.1| conserved hypothetical helicase-like protein [Helicobacter pylori
           26695]
          Length = 391

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 74/321 (23%), Positives = 114/321 (35%), Gaps = 53/321 (16%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           SLL P++LE+F GQ           +A +++     H  F GPPG+GKT+LAQ++A  L 
Sbjct: 5   SLLNPKSLEDFLGQEHLVGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIAYMLE 62

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
                 +     K  DL   L N ++   + V+FIDE HRL+   +E L P ME     L
Sbjct: 63  RPILLFNATDF-KLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDH-AL 120

Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA 196
           ++G      +                   L++ ++ R  I   L      DL  +  +  
Sbjct: 121 ILGASTQDPN-----------------YSLSHAIRSRSFI-FELTPLNKSDLDRLCAKAL 162

Query: 197 KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAID 256
            L    +   A   +   S G  R    LL           +  I   I    L  L   
Sbjct: 163 TLLKKQIEPGAKTYLLNNSAGDARALLNLLDL---------SAKIEDPITLKTLQSLRPH 213

Query: 257 KMGFDQL--DLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
            +       D  Y                  SA +   R + E+    Y+ +       P
Sbjct: 214 SLNDGSYSDDTHYNLT---------------SALIKSLRGSDENASIYYLARLIAGGENP 258

Query: 315 R--GRLLMPIAWQHLGIDIPH 333
               R L+  A + +G   P+
Sbjct: 259 EFIARRLVIFASEDIGNANPN 279


>gi|332673268|gb|AEE70085.1| ATPase [Helicobacter pylori 83]
          Length = 391

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 72/319 (22%), Positives = 114/319 (35%), Gaps = 49/319 (15%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           SLL P++LE+F GQ           +A +++     H  F GPPG+GKT+LAQ++A  L 
Sbjct: 5   SLLNPKSLEDFLGQEHLIGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIACMLE 62

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
                 +     K  DL   L N ++   + V+FIDE HRL+   +E L P ME     L
Sbjct: 63  RPILLFNATDF-KLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDH-AL 120

Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA 196
           ++G      +                   L++ ++ R  I   L      DL  +  +  
Sbjct: 121 ILGASTQDPN-----------------YSLSHAIRSRSFI-FELTPLNKSDLDKLCAKAL 162

Query: 197 KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAID 256
            L    +   A   +   S G  R    LL              IT E   +       D
Sbjct: 163 TLLKKQIKPSAKTYLLNNSAGDARALLNLLDL-----SAKIEDPITLETLQSLRPHSLND 217

Query: 257 KMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR- 315
               D       + + ++  G            S+   +I      Y+ +       P  
Sbjct: 218 GSYSDDTHYNLTSALIKSLRG------------SDENASI-----YYLARLIAGGENPEF 260

Query: 316 -GRLLMPIAWQHLGIDIPH 333
             R L+  A + +G   P+
Sbjct: 261 IARRLVVFASEDIGNANPN 279


>gi|169836550|ref|ZP_02869738.1| Holliday junction DNA helicase B [candidate division TM7
           single-cell isolate TM7a]
          Length = 85

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/76 (48%), Positives = 52/76 (68%)

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D  G D+LD   L  I   + GGPVGIET+S  L E R  IE++ EPY+++ GFI+RTP
Sbjct: 1   MDDNGLDELDRNILLSIINVYNGGPVGIETLSLLLGEDRRTIEEVYEPYLVKIGFIKRTP 60

Query: 315 RGRLLMPIAWQHLGID 330
           RGR++  + + HLGI+
Sbjct: 61  RGRVVTELGYNHLGIE 76


>gi|116328835|ref|YP_798555.1| recombination factor protein RarA [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116331744|ref|YP_801462.1| recombination factor protein RarA [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
 gi|116121579|gb|ABJ79622.1| Holliday junction resolvase helicase subunit-like ATPase
           [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116125433|gb|ABJ76704.1| Holliday junction resolvase helicase subunit-like ATPase
           [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
          Length = 423

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 67/322 (20%), Positives = 111/322 (34%), Gaps = 61/322 (18%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP   EE  GQ  A   L            +   ++  GPPG GK+TLA ++ R
Sbjct: 12  PLAHKIRPSGFEEVIGQTRATKQL--------VNYRSPVSIILYGPPGTGKSTLAGILCR 63

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE-DRDV-LFIDEIHRLSIIVEEILYPAMEDFQL 134
           +  + F   +  V     ++  LL   E +  + LF+DEIHR S   ++ L   +E   L
Sbjct: 64  KWNLPFVEYNA-VSTGVSEIKKLLERAEREGTILLFLDEIHRFSASQQDSLLKGVETGHL 122

Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            L+    E P+ R  +  LSR  ++                            E+   ++
Sbjct: 123 VLIGATTENPAFRITRPLLSRCQILKI---------------------EPLSWEEQSLLL 161

Query: 193 QRGAKLTGLAVT-DEAACEIAMR-SRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           +RG +    ++  +  A E  +R S G  R     L                       L
Sbjct: 162 ERGIQNLEYSIHLNPGAKETLIRFSGGDGRKLLSNLE---------------------GL 200

Query: 251 LRLAIDKMGFDQLDL-RYLTM-IARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
                +     + D+  YL   +      G    + ISA +   R +  D    Y+    
Sbjct: 201 SFSFPENHTISKSDVEEYLESRVIEYDKSGESHYDVISAFIKSVRGSDPDAALYYLAVLL 260

Query: 309 FIQRTPR--GRLLMPIAWQHLG 328
                P    R L+ +A + +G
Sbjct: 261 EGGEDPLFIMRRLIILASEDVG 282


>gi|291320002|ref|YP_003515260.1| AAA family ATPase [Mycoplasma agalactiae]
 gi|290752331|emb|CBH40302.1| ATPase, AAA family [Mycoplasma agalactiae]
          Length = 404

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 49/163 (30%), Positives = 74/163 (45%), Gaps = 16/163 (9%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
            + LRP+TL++  GQ      LK       AR       +F G  G GKT+ A  +A +L
Sbjct: 5   ANELRPKTLDDIIGQKSVVELLKRV-----ARDRIYSSFIFFGESGTGKTSAAVALANDL 59

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM- 137
           G+ +   +  V +K    A L+  L D DVL IDEIHRL+   ++IL   +E  ++ +  
Sbjct: 60  GLKYDYFNASVNSK----AELIKMLADNDVLIIDEIHRLNKDKQDILLSYLEFDKIIIYA 115

Query: 138 -VGEGPSARSVKINLSR-----FTLIAATTRVGLLTNPLQDRF 174
              E P  R      SR     FT ++       + + L+  F
Sbjct: 116 TTTENPYFRVNPALRSRMQILQFTKLSEQEMFEGIKHNLKKHF 158


>gi|317012260|gb|ADU82868.1| recombination factor protein RarA [Helicobacter pylori Lithuania75]
          Length = 391

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 77/321 (23%), Positives = 115/321 (35%), Gaps = 53/321 (16%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           SLL P +LE+F GQ           +A +++     H  F GPPG+GKT+LAQ++AR L 
Sbjct: 5   SLLNPTSLEDFLGQEHLIGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIARSLE 62

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
                 +     K  DL   L N ++   + V+FIDE HRL+   +E L P ME     +
Sbjct: 63  RPILLFNATDF-KLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALI 121

Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA 196
           +      A +   N S             L++ ++ R  I   L      DL  +  +  
Sbjct: 122 L-----WASTQDPNYS-------------LSHAIRSRSFI-FELTPLNKSDLDRLCDKAL 162

Query: 197 KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAID 256
            L    +   A   +   S G  R    LL           +  I   I    L  L   
Sbjct: 163 TLLKKQIEPSAKTYLLNNSAGDARALLNLLDL---------SAKIEDPITLETLQSLRPH 213

Query: 257 KM--GFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
            +  G    D  Y                  SA +   R + E+    Y+         P
Sbjct: 214 SLNDGSYSNDTHYNLT---------------SALIKSLRGSDENASIYYLAHLIAGGENP 258

Query: 315 R--GRLLMPIAWQHLGIDIPH 333
               R L+  A + +G   P+
Sbjct: 259 EFIARRLVIFASEDIGNANPN 279


>gi|238883747|gb|EEQ47385.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 552

 Score =  107 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 62/233 (26%), Positives = 95/233 (40%), Gaps = 28/233 (12%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
             +RP T E++ GQ    + +   I         L  ++F GP G+GKTTLA V++ E G
Sbjct: 28  EAIRPTTFEQYVGQDHLINPIDGAIRNFIKLG-YLPSMIFTGPSGIGKTTLASVISYECG 86

Query: 80  VNFRSTSGPVIAKAGDLAALLTNL--------------EDRDVLFIDEIHRLSIIVEEIL 125
           + F   S   +    DL   +                 E + VLFIDE+HRL+ I ++ L
Sbjct: 87  LPFLELSATTMT-TMDLKTTIMQKNQKNQKNQKNQNVGEQKIVLFIDELHRLTKIQQDWL 145

Query: 126 YPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAA-----TTRVGLLTNPLQDRFGIPI 178
            P +E+ ++ L+      P+ R  +  LSR  +             +L   +   F    
Sbjct: 146 LPYLENGEIVLIGATTIQPNTRIRQAILSRCQVFKLEKLTRKEIKKVLCQAIT--FQNLK 203

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
           R + Y    L  IV            DE    I  R++G  RIA  L+  + D
Sbjct: 204 RKHLY---QLGAIVYDDDDEEQGDGVDECFDLILDRAQGDCRIAINLIELISD 253


>gi|148554570|ref|YP_001262152.1| recombination factor protein RarA [Sphingomonas wittichii RW1]
 gi|148499760|gb|ABQ68014.1| Recombination protein MgsA [Sphingomonas wittichii RW1]
          Length = 444

 Score =  107 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 81/349 (23%), Positives = 121/349 (34%), Gaps = 62/349 (17%)

Query: 2   MDREGLLSRNVS------QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALD 55
           MD       + S      +       LRP  +E+  GQ               AR   L 
Sbjct: 1   MDLFNEAGPDASSVPCDVETRPLAERLRPTRIEDVVGQEHLTGPDAPLARMVAAR--RLS 58

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLT-----NLEDRDVLF 110
            ++F GPPG+GKTTLA+++A  +G+ F + S   +  AG  AA         +  R VLF
Sbjct: 59  SIIFWGPPGIGKTTLARLLADLVGMRFEAFSATDVTVAGLKAAYAEAKRHLRMGKRTVLF 118

Query: 111 IDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           +DE HR +  + E L P MED  +                    T I ATT     T P 
Sbjct: 119 LDESHRAARNITETLLPVMEDGTI--------------------TAILATTEAPSFTLP- 157

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR--R 228
                             K I  R   LT   +      ++  R+     +   L    R
Sbjct: 158 ------------------KGITSRARVLTLNPLDTGGLTQLLDRAEQHCGVQLNLTDEAR 199

Query: 229 VRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAG 288
           +  F +          + +  L   A++ +  + L       IA     G    E  SA 
Sbjct: 200 IALFEQAGGDGRYFLNMVEDLLDAPAMEPLAPEDLRRILSRRIANYDRQGDGHYELASAF 259

Query: 289 LSEPRDAIEDLIEPY---MIQQGFIQRTPRG--RLLMPIAWQHLGIDIP 332
               R +  D    Y   ++Q G     PR   R L+ +A + + +  P
Sbjct: 260 QKSIRGSDPDAALYYGARLVQAG---EDPRFILRRLLVMASEEVAMADP 305


>gi|296197531|ref|XP_002746323.1| PREDICTED: ATPase WRNIP1-like isoform 2 [Callithrix jacchus]
          Length = 641

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 62/343 (18%), Positives = 116/343 (33%), Gaps = 54/343 (15%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLG 66
           R + +       +RP TL+++ GQ  A      L+  +E        +  ++  GPPG G
Sbjct: 220 RQMLEGKPLADKMRPDTLQDYFGQSRAVGQETLLRSLLE-----TNEIPSLILWGPPGCG 274

Query: 67  KTTLAQVVARELGVNFRST--SGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRL 117
           KTTLA ++A     +           AK  D+  ++   +        + +LFIDEIHR 
Sbjct: 275 KTTLAHIIANNSKKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRF 334

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL-TNPLQDRFGI 176
           +   +     A+      +++ + P    V I +     +          T+PL      
Sbjct: 335 NKSQQVNA--ALLSRCRVIVLEKLPVEAMVTILMRAINSLGIHVLDSSRPTDPLSHSSNS 392

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
                 +                   + D+A   +A  S G  R     L+     A ++
Sbjct: 393 SSEPAIF-------------------IEDKAVDTLAYLSDGDARAGLNGLQLAV-LARLS 432

Query: 237 HAKTITRE-----IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
             K   ++          L+     K G  +  + Y      ++         ISA    
Sbjct: 433 SRKMFCKKSGQTYSPSRVLITENDVKEGLQRSHILYDRAGEEHYNC-------ISALHKS 485

Query: 292 PRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
            R + ++    ++ +       P    R L+  A + +G+  P
Sbjct: 486 MRGSDQNASLYWLARMLEGGEDPLYVARRLVRFASEDIGLADP 528


>gi|68483119|ref|XP_714494.1| hypothetical protein CaO19.11084 [Candida albicans SC5314]
 gi|68483220|ref|XP_714445.1| hypothetical protein CaO19.3601 [Candida albicans SC5314]
 gi|46436011|gb|EAK95381.1| hypothetical protein CaO19.3601 [Candida albicans SC5314]
 gi|46436067|gb|EAK95436.1| hypothetical protein CaO19.11084 [Candida albicans SC5314]
          Length = 547

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 62/233 (26%), Positives = 95/233 (40%), Gaps = 28/233 (12%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
             +RP T E++ GQ    + +   I         L  ++F GP G+GKTTLA V++ E G
Sbjct: 28  EAIRPTTFEQYVGQDHLINPIDGAIRNFIKLG-YLPSMIFTGPSGIGKTTLASVISYECG 86

Query: 80  VNFRSTSGPVIAKAGDLAALLTNL--------------EDRDVLFIDEIHRLSIIVEEIL 125
           + F   S   +    DL   +                 E + VLFIDE+HRL+ I ++ L
Sbjct: 87  LPFLELSATTMT-TMDLKTTIMQKNQKNQKNQKNQNVGEQKIVLFIDELHRLTKIQQDWL 145

Query: 126 YPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAA-----TTRVGLLTNPLQDRFGIPI 178
            P +E+ ++ L+      P+ R  +  LSR  +             +L   +   F    
Sbjct: 146 LPYLENGEIVLIGATTIQPNTRIRQAILSRCQVFKLEKLTRKEIKKVLCQAIT--FQNLK 203

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
           R + Y    L  IV            DE    I  R++G  RIA  L+  + D
Sbjct: 204 RKHLY---QLGAIVYDDDDEEQGDGVDECFDLILDRAQGDCRIAINLIELISD 253


>gi|218680790|ref|ZP_03528687.1| Holliday junction DNA helicase RuvB [Rhizobium etli CIAT 894]
          Length = 101

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 74/101 (73%), Positives = 92/101 (91%)

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           MEDFQLDL++GEGP+ARSVKI+LS+FTL+AATTR+GLLT PL+DRFGIP+RL+FY +E+L
Sbjct: 1   MEDFQLDLIIGEGPAARSVKIDLSKFTLVAATTRLGLLTTPLRDRFGIPVRLSFYTVEEL 60

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           + IV+RGA+L  L +T+E A EIA R+RGTPRIAGRLLRRV
Sbjct: 61  ELIVRRGARLMNLPMTEEGAREIARRARGTPRIAGRLLRRV 101


>gi|332246197|ref|XP_003272239.1| PREDICTED: ATPase WRNIP1 isoform 4 [Nomascus leucogenys]
          Length = 613

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 65/339 (19%), Positives = 118/339 (34%), Gaps = 46/339 (13%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           R + Q       +RP TL+++ GQ  A     +     +     +  ++  GPPG GKTT
Sbjct: 192 RQMLQGKPLADTMRPDTLQDYFGQSRAVGQDTLLRSLLETNE--IPSLILWGPPGCGKTT 249

Query: 70  LAQVVARELGVNFRST--SGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSII 120
           LA ++A     +           AK  D+  ++   +        + +LFIDEIHR +  
Sbjct: 250 LAHIIANNSKKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKS 309

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            +               V     +R   I L +  + A  T +    N L    GI +  
Sbjct: 310 QQ---------------VNAALLSRCRVIVLEKLPVEAMVTILMRAINSL----GIHVLD 350

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           +    + L       +    + + D+A   +A  S G  R     L+     A ++  K 
Sbjct: 351 SSRPTDPLSHSSN-SSSEPAMFIEDKAVDTLAYLSDGDARAGLNGLQLAV-LARLSSRKM 408

Query: 241 ITRE-----IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDA 295
             ++          L+     K G  +  + Y      ++         ISA     R +
Sbjct: 409 FCKKSGQSYSPSRVLITENDVKEGLQRSHILYDRAGEEHYNC-------ISALHKSMRGS 461

Query: 296 IEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
            ++    ++ +       P    R L+  A + +G+  P
Sbjct: 462 DQNASLYWLARMLEGGEDPLYVARRLVRFASEDIGLADP 500


>gi|327281797|ref|XP_003225633.1| PREDICTED: ATPase WRNIP1-like [Anolis carolinensis]
          Length = 461

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 53/285 (18%), Positives = 99/285 (34%), Gaps = 26/285 (9%)

Query: 67  KTTLAQVVARELGVN--FRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRL 117
           +TTLA ++A     N     T     AK  D+  ++   +        + +LFIDEIHR 
Sbjct: 74  QTTLAHIIANSSKKNGTRFVTLSATSAKTNDVRDVIAQAQNEKRLCKRKTILFIDEIHRF 133

Query: 118 SIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
           +   ++   P +E   + L+    E PS +     LSR  +I            +  R  
Sbjct: 134 NKSQQDTFLPHVECGTVTLIGATTENPSFQVNSALLSRCRVIVLEKLSVEAMEAILMRAV 193

Query: 176 IPIRLNFYEIEDLKTIVQRGAK----LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
             + +     E+  T    G+      T + +  +A   +A    G  R     L+    
Sbjct: 194 KSLGIQILSQEEPHTGSVNGSNSKSSETCVCIERKAINTLAYLCDGDARTGLNGLQMAVQ 253

Query: 232 FAEVA-HAKTITREIADAALLRLAID-KMGFDQLDLRYLTMIARNFGGGPVGIETISAGL 289
                   ++ T + +   ++      K G  +  + Y      ++         ISA  
Sbjct: 254 ARLTKLTNQSTTGDSSIQGMIITEDHVKEGLQRSHILYDRAGEEHYNC-------ISALH 306

Query: 290 SEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
              R + E+    ++ +       P    R L+  A + +G+  P
Sbjct: 307 KSMRGSDENASLYWLARMLEGGEDPLYVARRLVRFASEDIGLADP 351


>gi|109069427|ref|XP_001090335.1| PREDICTED: ATPase WRNIP1 isoform 1 [Macaca mulatta]
          Length = 640

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 65/339 (19%), Positives = 118/339 (34%), Gaps = 46/339 (13%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           R + Q       +RP TL+++ GQ  A     +     +     +  ++  GPPG GKTT
Sbjct: 219 RQMLQGKPLADTMRPDTLQDYFGQSRAVGQDTLLRSLLETNE--IPSLILWGPPGCGKTT 276

Query: 70  LAQVVARELGVNFRST--SGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSII 120
           LA ++A     +           AK  D+  ++   +        + +LFIDEIHR +  
Sbjct: 277 LAHIIANNSKKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKS 336

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            +               V     +R   I L +  + A  T +    N L    GI +  
Sbjct: 337 QQ---------------VNAALLSRCRVIVLEKLPVEAMVTILMRAINSL----GIHVLD 377

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           +    + L       +    + + D+A   +A  S G  R     L+     A ++  K 
Sbjct: 378 SSRPTDPLSHSSN-SSSEPAMFIEDKAVDTLAYLSDGDARAGLNGLQLAV-LARLSSRKM 435

Query: 241 ITRE-----IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDA 295
             ++          L+     K G  +  + Y      ++         ISA     R +
Sbjct: 436 FCKKSGQSYSPSRVLITENDVKEGLQRSHILYDRAGEEHYNC-------ISALHKSMRGS 488

Query: 296 IEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
            ++    ++ +       P    R L+  A + +G+  P
Sbjct: 489 DQNASLYWLARMLEGGEDPLYVARRLVRFASEDIGLADP 527


>gi|114605196|ref|XP_001159500.1| PREDICTED: ATPase WRNIP1 isoform 1 [Pan troglodytes]
          Length = 640

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 65/339 (19%), Positives = 119/339 (35%), Gaps = 46/339 (13%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           R + Q       +RP TL+++ GQ +A     +     +     +  ++  GPPG GKTT
Sbjct: 219 RQMLQGKPLADTMRPDTLQDYFGQSKAVGQDTLLRSLLETNE--IPSLILWGPPGCGKTT 276

Query: 70  LAQVVARELGVNFRST--SGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSII 120
           LA ++A     +           AK  D+  ++   +        + +LFIDEIHR +  
Sbjct: 277 LAHIIASNSKKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKS 336

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            +               V     +R   I L +  + A  T +    N L    GI +  
Sbjct: 337 QQ---------------VNAALLSRCRVIVLEKLPVEAMVTILMRAINSL----GIHVLD 377

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           +    + L       +    + + D+A   +A  S G  R     L+     A ++  K 
Sbjct: 378 SSRPTDPLSHSSN-SSSEPAMFIEDKAVDTLAYLSDGDARAGLNGLQLAV-LARLSSRKM 435

Query: 241 ITRE-----IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDA 295
             ++          L+     K G  +  + Y      ++         ISA     R +
Sbjct: 436 FCKKSGQSYSPSRVLITENDVKEGLQRSHILYDRAGEEHYNC-------ISALHKSMRGS 488

Query: 296 IEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
            ++    ++ +       P    R L+  A + +G+  P
Sbjct: 489 DQNASLYWLARMLEGGEDPLYVARRLVRFASEDIGLADP 527


>gi|257459680|ref|ZP_05624789.1| ATPase, AAA family [Campylobacter gracilis RM3268]
 gi|257443105|gb|EEV18239.1| ATPase, AAA family [Campylobacter gracilis RM3268]
          Length = 395

 Score =  105 bits (262), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 74/322 (22%), Positives = 124/322 (38%), Gaps = 60/322 (18%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
             RP++L++  GQ +  +  K F+ A      ++ H +F G  G GKTT+A+V+A EL  
Sbjct: 6   KFRPKSLDQIAGQGKIVAVFKKFVAAG-----SIPHSIFFGAAGSGKTTMARVIASELNY 60

Query: 81  NFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           +F       + K  D+  +L++      + ++FIDEIHRLS   +E+L   ME++   ++
Sbjct: 61  DFYELDATSL-KVEDIRKILSSHAGSLIKPLIFIDEIHRLSKTQQEVLLIPMENYAAIII 119

Query: 138 --VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
               E P                      +L++ ++ R  I         EDL+ ++ R 
Sbjct: 120 GATTENPQF--------------------VLSSGIRSRSMI-FEFEPLSYEDLEALLARV 158

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV--RDFAEVAHAKTITREIADAALLRL 253
               G  + +EA   +   S G  R    LL      D A         R  A AA    
Sbjct: 159 QGEIGFEMDEEARKYLLNSSSGDARSMLNLLEFALLADSAITLDTLRTLRANAVAA---- 214

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
                G    DL Y                  SA +   R +  D    Y+ +      +
Sbjct: 215 -----GVSSDDLHYELA---------------SAMIKSLRGSDADAALYYVARLIDAGES 254

Query: 314 PR--GRLLMPIAWQHLGIDIPH 333
                R ++ +A + +G   P+
Sbjct: 255 ADFIARRMVILASEDIGNANPN 276


>gi|18426904|ref|NP_569079.1| ATPase WRNIP1 isoform 2 [Homo sapiens]
 gi|17511930|gb|AAH18923.1| Werner helicase interacting protein 1 [Homo sapiens]
 gi|55661734|emb|CAH73663.1| Werner helicase interacting protein 1 [Homo sapiens]
 gi|119575491|gb|EAW55087.1| Werner helicase interacting protein 1, isoform CRA_c [Homo sapiens]
 gi|123982094|gb|ABM82876.1| Werner helicase interacting protein 1 [synthetic construct]
 gi|123996921|gb|ABM86062.1| Werner helicase interacting protein 1 [synthetic construct]
 gi|189067919|dbj|BAG37857.1| unnamed protein product [Homo sapiens]
          Length = 640

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 65/339 (19%), Positives = 119/339 (35%), Gaps = 46/339 (13%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           R + Q       +RP TL+++ GQ +A     +     +     +  ++  GPPG GKTT
Sbjct: 219 RQMLQGKPLADTMRPDTLQDYFGQSKAVGQDTLLRSLLETNE--IPSLILWGPPGCGKTT 276

Query: 70  LAQVVARELGVNFRST--SGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSII 120
           LA ++A     +           AK  D+  ++   +        + +LFIDEIHR +  
Sbjct: 277 LAHIIASNSKKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKS 336

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            +               V     +R   I L +  + A  T +    N L    GI +  
Sbjct: 337 QQ---------------VNAALLSRCRVIVLEKLPVEAMVTILMRAINSL----GIHVLD 377

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           +    + L       +    + + D+A   +A  S G  R     L+     A ++  K 
Sbjct: 378 SSRPTDPLSHSSN-SSSEPAMFIEDKAVDTLAYLSDGDARAGLNGLQLAV-LARLSSRKM 435

Query: 241 ITRE-----IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDA 295
             ++          L+     K G  +  + Y      ++         ISA     R +
Sbjct: 436 FCKKSGQSYSPSRVLITENDVKEGLQRSHILYDRAGEEHYNC-------ISALHKSMRGS 488

Query: 296 IEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
            ++    ++ +       P    R L+  A + +G+  P
Sbjct: 489 DQNASLYWLARMLEGGEDPLYVARRLVRFASEDIGLADP 527


>gi|169777453|ref|XP_001823192.1| werner helicase interacting protein [Aspergillus oryzae RIB40]
 gi|83771929|dbj|BAE62059.1| unnamed protein product [Aspergillus oryzae]
          Length = 518

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 54/325 (16%), Positives = 108/325 (33%), Gaps = 51/325 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP + ++  GQ           +      + + +++F G  G GKTT+A+++  
Sbjct: 113 PLAERVRPGSFDDIVGQNHLIGPNGTIRQ--FVHEDKIPNMIFWGSSGTGKTTIARII-G 169

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLSIIVEEILYPAM 129
           ++        G  I    +   ++              ++F DEIHR++   ++IL  A+
Sbjct: 170 DVSRRRFYEIGSTITTVTEYKNIIEKAFKDPDKGLRPSIVFCDEIHRITKPQQDILLDAI 229

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           +  ++ +++G      S+ I        A  T                      ++  + 
Sbjct: 230 KTGRI-VLIGATTENPSLTIRHGLVYKCAVYTLTKPKDA---------------DVRKML 273

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
             V     L    + DE    ++  + G  R++  LL    D ++      +T E    +
Sbjct: 274 HRVVEEQGLHSHLLDDELLEYLSNFADGDCRLSLNLLEIACDLSKRDG---MTGERLRNS 330

Query: 250 LLRL-AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           L      D+ G    D                   TISA     R +  D    Y+ +  
Sbjct: 331 LTMHLNYDRSGDQHYD-------------------TISAFHKSIRGSDADAALYYLARML 371

Query: 309 FIQRTPR--GRLLMPIAWQHLGIDI 331
                P    R L+    + +G+  
Sbjct: 372 KSGENPLFIARRLVVATSEDIGLAD 396


>gi|238494592|ref|XP_002378532.1| werner helicase interacting protein, putative [Aspergillus flavus
           NRRL3357]
 gi|220695182|gb|EED51525.1| werner helicase interacting protein, putative [Aspergillus flavus
           NRRL3357]
          Length = 518

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 54/324 (16%), Positives = 108/324 (33%), Gaps = 51/324 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP + ++  GQ           +      + + +++F G  G GKTT+A+++  
Sbjct: 113 PLAERVRPGSFDDIVGQNHLIGPNGTIRQ--FVHEDKIPNMIFWGSSGTGKTTIARII-G 169

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLSIIVEEILYPAM 129
           ++        G  I    +   ++              ++F DEIHR++   ++IL  A+
Sbjct: 170 DVSRRRFYEIGSTITTVTEYKNIIEKAFKDPDKGLRPSIVFCDEIHRITKPQQDILLDAI 229

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           +  ++ +++G      S+ I        A  T                      ++  + 
Sbjct: 230 KTGRI-VLIGATTENPSLTIRHGLVYKCAVYTLTKPKDA---------------DVRKML 273

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
             V     L    + DE    ++  + G  R++  LL    D ++      +T E    +
Sbjct: 274 HRVVEEQGLHSHLLDDELLEYLSNFADGDCRLSLNLLEIACDLSKRDG---MTGERLRNS 330

Query: 250 LLRL-AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           L      D+ G    D                   TISA     R +  D    Y+ +  
Sbjct: 331 LTMHLNYDRSGDQHYD-------------------TISAFHKSIRGSDADAALYYLARML 371

Query: 309 FIQRTPR--GRLLMPIAWQHLGID 330
                P    R L+    + +G+ 
Sbjct: 372 KSGENPLFIARRLVVATSEDIGLA 395


>gi|261839269|gb|ACX99034.1| recombination factor protein RarA [Helicobacter pylori 52]
          Length = 391

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 75/321 (23%), Positives = 116/321 (36%), Gaps = 53/321 (16%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           SLL P++LE+F GQ           +A +++     H  F GPPG+GKT+LAQ++AR L 
Sbjct: 5   SLLNPKSLEDFLGQEHLIGKDAPLFKALQSKH--FLHAFFYGPPGVGKTSLAQIIARMLE 62

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
                 +     K  DL   L N ++   + V+FIDE HRL+   +E L P ME     L
Sbjct: 63  RPILLFNATDF-KLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDH-AL 120

Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA 196
           ++G      +                   L++ ++ R  I   L   +  DL  +  +  
Sbjct: 121 ILGASTQDPN-----------------YSLSHAIRSRSFI-FELTPLKKSDLDKLCIKAL 162

Query: 197 KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAID 256
            L    +   A   +   S G  R    LL           +  I   I    L  L   
Sbjct: 163 TLLKKQIEPNAKTYLLNNSAGDARALLNLLDL---------SAKIEDPITLKTLQSLRPH 213

Query: 257 KMGFDQL--DLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
            +       D  Y                  SA +   R + E+    Y+ +       P
Sbjct: 214 SLNDGSYSDDTHYNLT---------------SALIKSLRGSDENASIYYLARLIAGGENP 258

Query: 315 R--GRLLMPIAWQHLGIDIPH 333
               R L+  A + +G   P+
Sbjct: 259 EFIARRLVIFASEDIGNANPN 279


>gi|306820901|ref|ZP_07454521.1| AAA family ATPase [Eubacterium yurii subsp. margaretiae ATCC 43715]
 gi|304551015|gb|EFM38986.1| AAA family ATPase [Eubacterium yurii subsp. margaretiae ATCC 43715]
          Length = 424

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 64/323 (19%), Positives = 127/323 (39%), Gaps = 49/323 (15%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           L+RP  L++  GQ    +   + I+ A +R   + +++F G PG+GKTT+A+++A E   
Sbjct: 13  LVRPHKLQDVFGQEHITAKGMI-IDMAISRNN-IPNMIFYGVPGVGKTTVAKIIA-ENTT 69

Query: 81  NFRSTSGPVIAKAGDLAALLTNL-----EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                      K  D+  ++ +      + R +++IDE+   +   +++L   +E  Q+ 
Sbjct: 70  MPIHMFNATHCKTDDVRKVILSYTDGIFKQRPLIYIDELQNFNKKQQQMLLDYIETGQIG 129

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
            +    E P     K  LSR  ++                            ++L  IV+
Sbjct: 130 FIGATTENPYQYIYKALLSRLIVLEFHPVSEKDIE-----------------KNLNHIVE 172

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           +  +   + ++ +A   IA  + G  R +  L   +     +   K    E    +L   
Sbjct: 173 KLKEQIKIDISQKAVKLIASYANGDVRRSVNL-LELILDLYLEDDKIKIDEEILKSLNIS 231

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM---IQQGFI 310
              ++ +D     Y               + +SA     R + E+    Y+   I+ G I
Sbjct: 232 K--QLTYDLNSDSY--------------YDLLSAFHKSVRGSDENAALHYLARAIKAGDI 275

Query: 311 QRTPRGRLLMPIAWQHLGIDIPH 333
           +  P  R L+ IA + +G+  P+
Sbjct: 276 K--PICRRLLCIASEDIGMAFPN 296


>gi|315638054|ref|ZP_07893239.1| ATPase [Campylobacter upsaliensis JV21]
 gi|315481902|gb|EFU72521.1| ATPase [Campylobacter upsaliensis JV21]
          Length = 391

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 78/313 (24%), Positives = 122/313 (38%), Gaps = 57/313 (18%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP  L+E  GQ E     K FI   K     L H LF G  G GKT+ A+ VA+E G++F
Sbjct: 8   RPNNLDEILGQYELVEVFKKFIAMQK-----LPHSLFFGVAGSGKTSFARAVAKEFGLDF 62

Query: 83  RSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137
               G    K  +L  +L N ++   + ++FIDEIHRLS   +E+L   ME+++L L+  
Sbjct: 63  YEFDGGNF-KLEELRKILENYKNSLYKPLIFIDEIHRLSKTQQEMLLIPMENYRLILIGA 121

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
             E P                      +L+  ++ R  +        +E+L+ ++++  K
Sbjct: 122 STENPYF--------------------VLSQGIRSRS-MLFHFKALGVEELELLLKKVQK 160

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257
                + D+A   +     G  R    L+  V     V   K I  +      LR   + 
Sbjct: 161 NLNFTLDDDAKDFLLK--SGDARSMLNLIEFVL----VLEQKHINLKNLKK--LRNTANS 212

Query: 258 MGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ--GFIQRTPR 315
            G    D  YL                 SA +   R +  D    Y+ +   G       
Sbjct: 213 EGVSSKDTHYLLA---------------SALIKSLRGSDVDAALYYLARLIDGGESADFI 257

Query: 316 GRLLMPIAWQHLG 328
            R L+  A + +G
Sbjct: 258 ARRLVIFASEDIG 270


>gi|294954392|ref|XP_002788145.1| werner helicase interacting protein, putative [Perkinsus marinus
           ATCC 50983]
 gi|239903360|gb|EER19941.1| werner helicase interacting protein, putative [Perkinsus marinus
           ATCC 50983]
          Length = 622

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 63/309 (20%), Positives = 109/309 (35%), Gaps = 49/309 (15%)

Query: 46  AAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN----FRSTSGPVIAKAGDLAALLT 101
           A  +    +  ++F GPPG GKTTLAQ++ R L  +      +    V A   D+   + 
Sbjct: 161 ATISHHPTVPSMIFWGPPGCGKTTLAQLLCRSLTQSGLPWRHTKLSAVNAGVNDVGLEIP 220

Query: 102 NLED--------RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINL 151
             E           +LF+DEIHR +   ++ L P +E   L L+    E PS +  +  +
Sbjct: 221 KAESMEGKVTISGTLLFLDEIHRFNKAQQDALLPHVESGTLTLIGATTENPSFQCNRALV 280

Query: 152 SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEI 211
           SR  +I  ++        +  R  +        +++    + R     G+          
Sbjct: 281 SRCQVIKFSSLTSDSIGRIL-RRALTSYYPQVAVDESTGDLLRILAEFGM---------- 329

Query: 212 AMRSRGTPRIAGRLLRRVRDFA------EVAHAKTITREIADAALLRLAIDKMGFDQLDL 265
                G  R +   L    D A        A +  + RE  + A+   +  +      D 
Sbjct: 330 -----GDVRASLNALELACDLAMMGPRCGEAASSGLRREHIEEAMATSSSGRHRLLGYD- 383

Query: 266 RYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIA 323
                       G +  +  SA     R + +D    +  +       P    R LM IA
Sbjct: 384 ----------KNGDIHYDLASALQKSIRGSDKDAAAYWTTRMLLGGEPPEYVSRRLMRIA 433

Query: 324 WQHLGIDIP 332
            + +G+  P
Sbjct: 434 SEDVGLADP 442


>gi|57505824|ref|ZP_00371749.1| ATPase, AAA family [Campylobacter upsaliensis RM3195]
 gi|57015854|gb|EAL52643.1| ATPase, AAA family [Campylobacter upsaliensis RM3195]
          Length = 391

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 78/313 (24%), Positives = 123/313 (39%), Gaps = 57/313 (18%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP  L+E  GQ E     K FI   K     L H LF G  G GKT+ A+ VA+E G++F
Sbjct: 8   RPNNLDEILGQYELVEVFKKFIAMQK-----LPHSLFFGVAGSGKTSFARSVAKEFGLDF 62

Query: 83  RSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137
               G    K  +L  +L N ++   + ++FIDEIHRLS   +E+L   ME+++L L+  
Sbjct: 63  YEFDGGNF-KLEELRKILENYKNSLYKPLIFIDEIHRLSKTQQEMLLIPMENYRLILIGA 121

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
             E P                      +L+  ++ R  +        +E+L+ ++++  K
Sbjct: 122 STENPYF--------------------VLSQGIRSRS-MLFHFKALGVEELELLLKKVQK 160

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257
                + D+A   +     G  R    L+  V     V   K I  +      LR   + 
Sbjct: 161 NLNFTLDDDAKDFLLK--SGDARSMLNLIEFVL----VLEQKHINLKNLKK--LRNTANS 212

Query: 258 MGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ--GFIQRTPR 315
            G +  D  YL                 SA +   R +  D    Y+ +   G       
Sbjct: 213 EGVNSKDTHYLLA---------------SALIKSLRGSDVDAALYYLARLIDGGESADFI 257

Query: 316 GRLLMPIAWQHLG 328
            R L+  A + +G
Sbjct: 258 ARRLVIFASEDIG 270


>gi|167384792|ref|XP_001737100.1| werner helicase interacting protein [Entamoeba dispar SAW760]
 gi|165900271|gb|EDR26634.1| werner helicase interacting protein, putative [Entamoeba dispar
           SAW760]
          Length = 428

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 79/351 (22%), Positives = 142/351 (40%), Gaps = 63/351 (17%)

Query: 2   MDREGLLS----RNVSQEDA-----DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAE 52
           M++  + S    +N+  E +          RP+ +EE  GQ++   +    I       +
Sbjct: 4   MEQTSIYSFVKSKNLKAELSHTFGTLAERRRPQKIEEVVGQLKTRDD---IIHQITVLGK 60

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLED----R 106
            +D ++F GPPG GKTTL +++      +F    G  I      DL +++   ++    +
Sbjct: 61  -IDSMIFFGPPGCGKTTLCKLIKGYFEKSFIELDGSSINTKMTKDLKSIIKKNKETTHSQ 119

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
            ++FIDEIH +S IV+E+L   +++  + L+   G + +     LS+  L+         
Sbjct: 120 TIIFIDEIHCISPIVQELLIDLLKEKTIHLI---GTTTQVPSFCLSKELLL--------- 167

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRG--AKLTGLAVTDEAACEIAMRSRGTPRIAGR 224
                  F   I L       LK I++R   A+ +   V+DE   +I   S G  R+A  
Sbjct: 168 -------FVRVIMLERLSETSLKEIIKRAINAEYSKYIVSDEIINKIIDSSDGDGRMALN 220

Query: 225 LLRRVRDFAEVAHAKTITREIADA--ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGI 282
            L R+   AE+     I+ +          L  DK G +  +L                 
Sbjct: 221 NLERLIQCAELEKVNEISIKFVHEIIGKKSLNYDKRGDEHYNL----------------- 263

Query: 283 ETISAGLSEPRDAIEDLIEPYMIQQGFI--QRTPRGRLLMPIAWQHLGIDI 331
             ISA     R + ED    ++ +      + +   R ++ IA + +G+  
Sbjct: 264 --ISAFQKSIRGSDEDASVYWLERMILSGEKLSYITRRMLRIASEDIGMAD 312


>gi|326318084|ref|YP_004235756.1| Holliday junction DNA helicase RuvB domain-containing protein
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323374920|gb|ADX47189.1| Holliday junction DNA helicase RuvB domain protein [Acidovorax
           avenae subsp. avenae ATCC 19860]
          Length = 147

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 9/115 (7%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP +L+E  GQ       K    A +  +     ++F GPPG+GKTTLA++ A 
Sbjct: 12  PLAEALRPASLDEVIGQSHLLGEGKPLRLAFE--SGKPHSMIFWGPPGVGKTTLARLTAT 69

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEIL 125
                F + S  V +   D+ A +   +         +LF+DEIHR +  V   +
Sbjct: 70  AFECEFIALSA-VFSGVKDIRAAMDQAQHNLAMGKHTILFVDEIHRFNKAVNHFI 123


>gi|292491563|ref|YP_003527002.1| ATPase AAA [Nitrosococcus halophilus Nc4]
 gi|291580158|gb|ADE14615.1| AAA ATPase central domain protein [Nitrosococcus halophilus Nc4]
          Length = 603

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 83/323 (25%), Positives = 133/323 (41%), Gaps = 44/323 (13%)

Query: 30  FTGQVEACSNLKVFIEAAKARAEALD---HVLFVGPPGLGKTTLAQVVARELGVNFRSTS 86
           + G   A   LK+    A  ++       +++F GP GLGKT LA+ VA+ LG+      
Sbjct: 290 YVGNYAAVRRLKIECTLALKQSNPPTMPINLMFSGPGGLGKTELARRVAKALGLPLVDVP 349

Query: 87  GPVIAKAGDLAALLTNLEDRD---------------------VLFIDEIHRLSIIVEEIL 125
              +     L   +     ++                     V+F+DE+H L    +  L
Sbjct: 350 ATTVRDVDSLLERINQTLQKNGQEPIEVGTDSGLKKMEYPPLVIFLDEVHELRRNADTFL 409

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
              M + +    VG+      V  +    TL+AATT  GLL +P   RF I I L  Y  
Sbjct: 410 --NMFEPKEKRAVGK-----KVVGDFKNATLLAATTTPGLLPSPFLSRFRI-IDLVPYTA 461

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           E++  I++   + +G AV +     +A R R  PR+A   ++R  +             +
Sbjct: 462 EEVAAIIKPVFQKSGKAVEESFLVGLAKRGRLNPRVA---IQRAEEMLSHHLFDEKQYPL 518

Query: 246 ADAALLRL-----AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
            +  L R+      +D  G  QLD  YL  +      GP G+  + + L   R+ I  ++
Sbjct: 519 NEIGLERISTESWRVDTHGLRQLDHTYLKAL----QSGPRGLSALVSLLPVEREEITQMV 574

Query: 301 EPYMIQQGFIQRTPRGRLLMPIA 323
           EPY++Q   I  T +GR L    
Sbjct: 575 EPYLLQLEAISLTTKGRELTERG 597


>gi|317181763|dbj|BAJ59547.1| recombination factor protein RarA [Helicobacter pylori F57]
          Length = 391

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 71/319 (22%), Positives = 113/319 (35%), Gaps = 49/319 (15%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           SLL P++LE+F GQ           +A +++     H  F GPPG+GKT+LAQ++A  L 
Sbjct: 5   SLLNPKSLEDFLGQEHLIGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIACMLE 62

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
                 +     K   L   L N ++   + V+FIDE HRL+   +E L P ME     L
Sbjct: 63  RPILLFNATDF-KLEGLRLKLKNYQNTLLKPVIFIDETHRLNKTQQEFLLPIMEKDH-AL 120

Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA 196
           ++G      +                   L++ ++ R  I   L      DL  +  +  
Sbjct: 121 ILGASTQDPN-----------------YSLSHAIRSRSFI-FELTPLNKSDLDKLCAKAL 162

Query: 197 KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAID 256
            L    +   A   +   S G  R    LL              IT E   +       D
Sbjct: 163 TLLKKQIEPSAKTYLLNNSAGDARALLNLLDL-----SAKIEDPITLETLQSLRPHSLND 217

Query: 257 KMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR- 315
               D       + + ++  G            S+   +I      Y+ +       P  
Sbjct: 218 GSYSDDTHYNLTSALIKSLRG------------SDENASI-----YYLARLIAGGENPEF 260

Query: 316 -GRLLMPIAWQHLGIDIPH 333
             R L+  A + +G   P+
Sbjct: 261 IARRLVVFASEDIGNANPN 279


>gi|325066414|ref|ZP_08125087.1| recombination factor protein RarA [Actinomyces oris K20]
          Length = 400

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 60/295 (20%), Positives = 106/295 (35%), Gaps = 53/295 (17%)

Query: 51  AEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG-----PVIAKAGDLAALLTNLED 105
           +  L  ++  GPPG GKTT+A+++A   G+ F   S        + K    AA    +  
Sbjct: 3   SGRLSSIILWGPPGCGKTTIARLLADRTGLVFEQVSATFSGVADLRKVFAAAARRREIGQ 62

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRV 163
             +LF+DEIHR +   ++   P +ED  + L+    E PS       LSR  ++      
Sbjct: 63  GTLLFVDEIHRFNRAQQDSFLPYVEDGTVVLVGATTENPSFELNGALLSRCQVMVLRR-- 120

Query: 164 GLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT--GLAVTDEAACEIAMRSRGTPRI 221
                               +   L  ++ R   L    LA+T++A   +   + G  R 
Sbjct: 121 -------------------LDEAALTELLARAESLMGRSLALTEDARTALLSMADGDGRY 161

Query: 222 AGRLLRRVRDFAEVAHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGP 279
              ++ +V    +    + +  E   + +   A   DK   +  +L              
Sbjct: 162 LLGMVEQVLAAQDADGPEPLEVEGLRSVIASRAPLYDKSHEEHYNL-------------- 207

Query: 280 VGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
                ISA     R +  D    ++ +       P    R L+  A + +G+  P
Sbjct: 208 -----ISALHKSMRGSDPDAALYWLTRMLGGGEDPLYVARRLVRFASEDVGMADP 257


>gi|205356556|ref|ZP_03223319.1| helicase like protein [Campylobacter jejuni subsp. jejuni CG8421]
 gi|205345561|gb|EDZ32201.1| helicase like protein [Campylobacter jejuni subsp. jejuni CG8421]
          Length = 393

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 76/318 (23%), Positives = 127/318 (39%), Gaps = 57/318 (17%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP   ++  GQ E     K F    K     L H +F G  G GKTT A+VVA+E G++F
Sbjct: 8   RPENFDDILGQYELIEIFKKFTALQK-----LPHSIFFGTAGSGKTTFARVVAKEFGLDF 62

Query: 83  RSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137
               G    K  +L  +L N ++   + ++FIDEIHRLS   +E+L   ME+++L L+  
Sbjct: 63  YEFDGGNF-KLEELRKILDNYKNSLYKPLIFIDEIHRLSKTQQEMLLIPMENYRLILIGA 121

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
             E P                      +L++ ++ R  +        +++L+T++ R  +
Sbjct: 122 STENPYF--------------------VLSSGIRSRS-MLFEFKSLGVKELETLLLRVQE 160

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257
               ++  EA   +   +    R    LL  V     V + K I+ E      LR  I+ 
Sbjct: 161 KMKFSIDKEAKDFLLKSA--DARAMLNLLEFVL----VLNEKHISLENLKK--LRNTINS 212

Query: 258 MGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR-- 315
            G    D  Y+                 SA +   R +  D    Y+ +      +    
Sbjct: 213 EGVSSKDTHYILA---------------SAMIKSLRGSDVDAAIYYLARLIDAGESADFI 257

Query: 316 GRLLMPIAWQHLGIDIPH 333
            R L+  + + +G   P+
Sbjct: 258 ARRLVIFSSEDIGNADPN 275


>gi|251773179|gb|EES53732.1| AAA ATPase [Leptospirillum ferrodiazotrophum]
          Length = 451

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 63/321 (19%), Positives = 106/321 (33%), Gaps = 38/321 (11%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            +RP +LE+  GQ        +F             ++  GPPG GK+   +++ R L  
Sbjct: 18  RMRPSSLEDLVGQEALLGPQGLFRRFI--AEGRWPSMVLFGPPGTGKSGFVELLPRLLSD 75

Query: 81  NFRSTSGPVIAKAGDLAALLT------NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           +  +      A   DL   L           + V+ +DEIH  S   +E+L   +E  Q+
Sbjct: 76  HTFAHLNATTAGVADLRPELARGERRRREGGQHVVVLDEIHTWSKSQQEVLLSGVETGQI 135

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
            L+                      TT    L  PL  R  +       +   L T++ R
Sbjct: 136 ILLGLSN------------------TTPYAALIPPLASRL-LLFPFQPLDENALSTLLDR 176

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
           G                        R +G   RR+    E A            A  R  
Sbjct: 177 GLHRLARETHGPPLQLDPAARSLLVRYSGGDGRRLLLALESA---------VLMASGRGG 227

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
            +    ++  L  L+   + +G      +TISA +   R+   D    ++ +       P
Sbjct: 228 EEFRVGEEDVLAILSRAGQVYGDKDSHYDTISAFIKSVRNYDPDAALHWLARMIEGGEDP 287

Query: 315 R--GRLLMPIAWQHLGIDIPH 333
               R L+ +A + +G+  P 
Sbjct: 288 LYIARRLVILAAEDVGLADPQ 308


>gi|57237203|ref|YP_178215.1| recombination factor protein RarA [Campylobacter jejuni RM1221]
 gi|57166007|gb|AAW34786.1| ATPase, AAA family protein [Campylobacter jejuni RM1221]
 gi|315057635|gb|ADT71964.1| Helicase-like protein [Campylobacter jejuni subsp. jejuni S3]
          Length = 393

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 76/318 (23%), Positives = 126/318 (39%), Gaps = 57/318 (17%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP   ++  GQ E     K F    K     L H +F G  G GKTT A+VVA+E G++F
Sbjct: 8   RPENFDDILGQYELIEIFKKFTALQK-----LPHSIFFGTAGSGKTTFARVVAKEFGLDF 62

Query: 83  RSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137
               G    K  +L  +L N ++   + ++FIDEIHRLS   +E+L   ME+++L L+  
Sbjct: 63  YEFDGGNF-KLEELRKILDNYKNSLYKPLIFIDEIHRLSKTQQEMLLIPMENYRLILIGA 121

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
             E P                      +L++ ++ R  +        +++L+T++ R  +
Sbjct: 122 STENPYF--------------------VLSSGIRSRS-MLFEFKSLGVKELETLLLRVQE 160

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257
               ++  EA   +   +    R    LL  V     V   K I+ E      LR  I+ 
Sbjct: 161 KMKFSIDKEAKDFLLKSA--DARAMLNLLEFVL----VLDEKHISLENLKK--LRNTINS 212

Query: 258 MGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR-- 315
            G    D  Y+                 SA +   R +  D    Y+ +      +    
Sbjct: 213 EGVSSKDTHYILA---------------SAMIKSLRGSDVDAAIYYLARLIDAGESADFI 257

Query: 316 GRLLMPIAWQHLGIDIPH 333
            R L+  + + +G   P+
Sbjct: 258 ARRLVIFSSEDIGNADPN 275


>gi|313678201|ref|YP_004055941.1| AAA family ATPase [Mycoplasma bovis PG45]
 gi|312950489|gb|ADR25084.1| ATPase, AAA family [Mycoplasma bovis PG45]
          Length = 407

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 65/323 (20%), Positives = 112/323 (34%), Gaps = 55/323 (17%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +   + LRP+TL++  GQ +    LK     AK R       +F G  G GKT+ A  +A
Sbjct: 2   NNLANELRPKTLDDIIGQKQVVDLLKKV---AKDRIH--SSFIFFGESGTGKTSSAVALA 56

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
            +LG+ +   +  V +K    A L   L D +VL IDEIHRL+   ++IL   +E  ++ 
Sbjct: 57  NDLGLKYNYFNASVNSK----AELTKMLSDNEVLIIDEIHRLNKDKQDILLSYLEFDKII 112

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           +     E P  R                        L+ R  I       E E  + +  
Sbjct: 113 IYATTTENPYFRVN--------------------PALRSRMQILQFTKLSEDEMFEGVKL 152

Query: 194 RGAKLTG-LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
              K      + D         S G  R     L+ +    +         +      + 
Sbjct: 153 NLKKHFPNYEMDDSTIKVFVKLSNGDYRSCLNNLQMLVLMTKNKQISLDDIKKFVP-NIS 211

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
              D+      +   L+   ++  G  V        +              +++ G +Q 
Sbjct: 212 FYSDENSSSHYNN--LSAFHKSLRGSDVDASLYYGAI--------------ILKSGDLQ- 254

Query: 313 TPRG--RLLMPIAWQHLGIDIPH 333
              G  R L+  +++ +G   P+
Sbjct: 255 ---GLFRRLIACSYEDVGFADPN 274


>gi|254775881|ref|ZP_05217397.1| recombination factor protein RarA [Mycobacterium avium subsp. avium
           ATCC 25291]
          Length = 391

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 68/296 (22%), Positives = 117/296 (39%), Gaps = 59/296 (19%)

Query: 51  AEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------E 104
              +   +  GPPG GKTTLA ++++  G  F + S  + A   D+ A++ +        
Sbjct: 3   GSGVASAILYGPPGSGKTTLAALISQATGRRFEALSA-LSAGVKDVRAVIESARTALLRG 61

Query: 105 DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTR 162
           ++ VLFIDE+HR S   ++ L  A+E+  + L+    E PS   V   LSR         
Sbjct: 62  EQTVLFIDEVHRFSKTQQDALLSAVENRVVLLVAATTENPSFSVVAPLLSR--------- 112

Query: 163 VGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKL-----TGLAVTDEAACEIAMRSRG 217
                        + ++L     +D++T+V+R           + V  EA   +   + G
Sbjct: 113 ------------SLILQLRPLSADDIRTVVRRAIDDPRGLGGRVPVAPEAVDLLVRLAAG 160

Query: 218 TPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGG 277
             R A   L    +  E    +T+ + + +AA   +  D+ G    D+            
Sbjct: 161 DARRALTALEVAAEAGESVTVQTVEQSLDEAA---VRYDRDGDQHYDV------------ 205

Query: 278 GPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
                  ISA +   R +  D    Y+ +       PR   R LM +A + +G+  
Sbjct: 206 -------ISAFIKSVRGSDVDAALHYLARMLVAGEDPRFIARRLMILASEDIGMAD 254


>gi|154148052|ref|YP_001406390.1| recombination factor protein RarA [Campylobacter hominis ATCC
           BAA-381]
 gi|153804061|gb|ABS51068.1| ATPase, AAA family [Campylobacter hominis ATCC BAA-381]
          Length = 392

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 76/318 (23%), Positives = 123/318 (38%), Gaps = 56/318 (17%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP  +++ +GQ E  +  + FI+      E + + +F GP G GKTTLA+V+A EL   F
Sbjct: 8   RPDKIDDISGQHEIKAIFREFIK-----KEKIPNSIFFGPAGSGKTTLAKVLANELNYTF 62

Query: 83  RSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137
                  + K  D+  +L   E+   + ++FIDEIHRLS   +EIL   +E+ +  ++  
Sbjct: 63  YELDASNL-KVEDIRKILNMHENSLYKPLIFIDEIHRLSKNQQEILLIPLENQKAVIIGA 121

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
             E P                      +LT+ ++ R             DL  + ++  K
Sbjct: 122 TTENPQF--------------------VLTSGIRSRCMF-FEFKALTNADLCELFEKVQK 160

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257
                +  EA   +   S G  R    LL    DFA +       + +     LR     
Sbjct: 161 SLNFTIDKEAKNYLISSSGGDARAMFNLL----DFALLIDENISLKTLKT---LRANSIA 213

Query: 258 MGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR-- 315
            G +  D  Y                 ISA +   R +  D    Y+ +      +P   
Sbjct: 214 EGANSDDTHYQ---------------IISAFIKSIRGSDIDAAIYYLARMLENGESPDFI 258

Query: 316 GRLLMPIAWQHLGIDIPH 333
            R LM ++ + +G   PH
Sbjct: 259 ARRLMILSAEDVGNANPH 276


>gi|283955639|ref|ZP_06373132.1| ATPase, AAA family protein [Campylobacter jejuni subsp. jejuni
           1336]
 gi|283792864|gb|EFC31640.1| ATPase, AAA family protein [Campylobacter jejuni subsp. jejuni
           1336]
          Length = 393

 Score =  102 bits (254), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 76/318 (23%), Positives = 126/318 (39%), Gaps = 57/318 (17%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP   ++  GQ E     K F    K     L H +F G  G GKTT A+VVA+E G++F
Sbjct: 8   RPENFDDILGQYELIEIFKKFTALQK-----LPHSIFFGTAGSGKTTFARVVAKEFGLDF 62

Query: 83  RSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137
               G    K  +L  +L N ++   + ++FIDEIHRLS   +E+L   ME+++L L+  
Sbjct: 63  YEFDGGNF-KLEELRKILDNYKNSLYKPLIFIDEIHRLSKTQQEMLLIPMENYRLILIGA 121

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
             E P                      +L++ ++ R  +        +++L+T++ R  +
Sbjct: 122 STENPYF--------------------VLSSGIRSRS-MLFEFKSLGVKELETLLLRVQE 160

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257
               ++  EA   +   +    R    LL  V     V   K I+ E      LR  I+ 
Sbjct: 161 KMKFSIDKEAKDFLLKSA--DARAMLNLLEFVL----VLDEKHISLENLKK--LRNTINS 212

Query: 258 MGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR-- 315
            G    D  Y+                 SA +   R +  D    Y+ +      +    
Sbjct: 213 EGVSSKDTHYILA---------------SAMIKSLRGSDVDAAIYYLARLIDAGESADFI 257

Query: 316 GRLLMPIAWQHLGIDIPH 333
            R L+  + + +G   P+
Sbjct: 258 ARRLVIFSSEDVGNADPN 275


>gi|86153728|ref|ZP_01071931.1| ATPase, AAA family protein [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|85842689|gb|EAQ59901.1| ATPase, AAA family protein [Campylobacter jejuni subsp. jejuni
           HB93-13]
          Length = 393

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 76/318 (23%), Positives = 126/318 (39%), Gaps = 57/318 (17%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP   ++  GQ E     K F    K     L H +F G  G GKTT A+VVA+E G++F
Sbjct: 8   RPENFDDILGQYELIEIFKKFTALQK-----LPHSIFFGTAGSGKTTFARVVAKEFGLDF 62

Query: 83  RSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137
               G    K  +L  +L N ++   + ++FIDEIHRLS   +E+L   ME+++L L+  
Sbjct: 63  YEFDGGNF-KLEELRKILDNYKNSLYKPLIFIDEIHRLSKTQQEMLLIPMENYRLILIGA 121

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
             E P                      +L++ ++ R  +        +++L+T++ R  +
Sbjct: 122 STENPYF--------------------VLSSGIRSRS-MLFEFKSLGVKELETLLLRVQE 160

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257
               ++  EA   +   +    R    LL  V     V   K I+ E      LR  I+ 
Sbjct: 161 KMKFSIDKEAKDFLLKSA--DARAMLNLLEFVL----VLDEKHISLENLKK--LRNTINS 212

Query: 258 MGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR-- 315
            G    D  Y+                 SA +   R +  D    Y+ +      +    
Sbjct: 213 EGVSSKDTHYILA---------------SAMIKSLRGSDVDAAIYYLARLIDAGESADFI 257

Query: 316 GRLLMPIAWQHLGIDIPH 333
            R L+  + + +G   P+
Sbjct: 258 ARRLVIFSSEDVGNADPN 275


>gi|153951019|ref|YP_001397445.1| recombination factor protein RarA [Campylobacter jejuni subsp.
           doylei 269.97]
 gi|152938465|gb|ABS43206.1| ATPase, AAA family protein [Campylobacter jejuni subsp. doylei
           269.97]
          Length = 393

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 76/318 (23%), Positives = 125/318 (39%), Gaps = 57/318 (17%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP   ++  GQ E     K F    K     L H +F G  G GKTT A+VVA+E G++F
Sbjct: 8   RPENFDDILGQYELIEIFKKFTALQK-----LPHSIFFGTAGSGKTTFARVVAKEFGLDF 62

Query: 83  RSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137
               G    K  +L  +L N ++   + ++FIDEIHRLS   +E+L   ME+++L L+  
Sbjct: 63  YEFDGGNF-KLEELRKILDNYKNSLYKPLIFIDEIHRLSKTQQEMLLIPMENYRLILIGA 121

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
             E P                      +L++ ++ R  +         ++L+T++ R  +
Sbjct: 122 STENPYF--------------------VLSSGIRSRS-MLFEFKSLGAKELETLLLRVQE 160

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257
               ++  EA   +   +    R    LL  V     V   K I+ E      LR  I+ 
Sbjct: 161 KMKFSIDKEAKDFLLKSA--DVRAMLNLLEFVL----VLDEKHISLENLKK--LRNTINS 212

Query: 258 MGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR-- 315
            G    D  Y+                 SA +   R +  D    Y+ +      +    
Sbjct: 213 EGVSSKDTHYILA---------------SAMIKSLRGSDVDAAIYYLARLIDAGESADFI 257

Query: 316 GRLLMPIAWQHLGIDIPH 333
            R L+  + + +G   P+
Sbjct: 258 ARRLVIFSSEDVGNADPN 275


>gi|269114890|ref|YP_003302653.1| ATPase, AAA family [Mycoplasma hominis]
 gi|268322515|emb|CAX37250.1| ATPase, AAA family [Mycoplasma hominis ATCC 23114]
          Length = 404

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 66/325 (20%), Positives = 125/325 (38%), Gaps = 58/325 (17%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           +    +L+RP+ LE+F    E     +  IE    R       +F G PG GKTT++ ++
Sbjct: 2   DSNLANLIRPKILEDFICPQEQKKLFQKIIENNDYR-----SFIFYGKPGTGKTTISYIL 56

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           A  L VN+   +  +  K      L+  L+   +L IDEIHRL+   ++IL P +E+  +
Sbjct: 57  ANALKVNYEYFNAAIENK----EDLVHKLKLNKILIIDEIHRLNKDKQDILLPYLENDLI 112

Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            +     E P  +                    L   L+ R  I        I+DL + +
Sbjct: 113 TIYATTTENPYFK--------------------LNPALRSRCSIIEITKP-TIQDLSSCL 151

Query: 193 QRG-AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL- 250
           +    K  G+ +  + A  +A+++ G  R A   L  +     +   +  + E     + 
Sbjct: 152 KNACLKTFGVDLNKDIADYLALQANGDFRSALNNLDLIML---IFKDQEFSLEAIKKIIP 208

Query: 251 -LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY-MIQQG 308
            ++ + D+ G +  D  YL+   ++  G  +                 D    +  I   
Sbjct: 209 SIQFSSDESGDNHYD--YLSAFHKSLRGSDI-----------------DAALYWGFIIIK 249

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIPH 333
                   R ++  +++ +G+  P 
Sbjct: 250 SGDFDGLFRRMLCASYEDVGMANPK 274


>gi|149412797|ref|XP_001510043.1| PREDICTED: similar to Werner helicase interacting protein
           [Ornithorhynchus anatinus]
          Length = 468

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 53/293 (18%), Positives = 98/293 (33%), Gaps = 22/293 (7%)

Query: 54  LDHVLFVGPPGLG-KTTLAQVVARELGVNFRST--SGPVIAKAGDLAALLTNLE------ 104
           +  +L  GP G G +TTLA ++A     N           AK  D+  ++   +      
Sbjct: 71  VSSLLKYGPKGKGSETTLAHIIANNCKRNSTRFVTLSATSAKTNDVRDIIKQAQNEKRLF 130

Query: 105 -DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATT 161
             + +LFIDEIHR +   ++   P +E   + L+    E PS +     LSR  +I    
Sbjct: 131 KRKTILFIDEIHRFNKAQQDTFLPHVERGTVTLIGATTENPSFQVNAALLSRCRVIVLEK 190

Query: 162 RVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRI 221
                   +  R    + +   +  D       G         ++ A             
Sbjct: 191 LSVEAMEVILLRALSSLDICVVDQGDPSDRADGGGGSEPTVFIEKRAVSTLAYLCDGDAR 250

Query: 222 AGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVG 281
           AG    ++   A +    T   +     +    + K G  +  + Y      ++      
Sbjct: 251 AGLNGLQLAIQARLTPGATKPSDSPRIFITESDV-KEGLQRSHILYDRAGEEHYNC---- 305

Query: 282 IETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
              ISA     R + ++    ++ +       P    R L+  A + +G+  P
Sbjct: 306 ---ISALHKSMRGSDQNASLYWLARMLEGGEDPLYVARRLVRFASEDVGLADP 355


>gi|157165173|ref|YP_001465949.1| recombination factor protein RarA [Campylobacter concisus 13826]
 gi|112801797|gb|EAT99141.1| ATPase, AAA family protein [Campylobacter concisus 13826]
          Length = 394

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 69/285 (24%), Positives = 112/285 (39%), Gaps = 21/285 (7%)

Query: 17  ADISLL-RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           + ++L+ RP+ L+E  GQ    +    FI  +K     + H +F GP G GKT+ A+ VA
Sbjct: 2   SSLALMFRPKNLDEICGQKAVKTAFLKFIATSK-----IPHSIFYGPAGCGKTSFARAVA 56

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLE---DRDVLFIDEIHRLSIIVEEILYPAMEDF 132
                +F    G  + K  D   +L N E   ++ + FIDEIHRLS   +E L   ME++
Sbjct: 57  SGANYDFYEFDGGNL-KIDDFRKILKNYENALNKPLFFIDEIHRLSKTQQEALLIPMENY 115

Query: 133 QLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           +  ++    E P         SR  L             L  +  I  +++F   ED K 
Sbjct: 116 KALVIGASTENPFFTLSSGIRSRSMLFEFRPLSSSDFEELLAK--IKEQISFSIDEDAKE 173

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
            + + +   G A       E A+       I    L+ +R  A    AK        A+ 
Sbjct: 174 YLFKSSG--GDARAMLNLLEFAVTLDENVSIEN--LKTLRQNALKEGAKEDDTHYELASA 229

Query: 251 LRLAIDKMGFDQLD-LRYLTMIARNFGGGPVGIETISAGLSEPRD 294
              ++   G D+   + YL  +  +          ++   SE   
Sbjct: 230 FIKSL--RGSDENAVIYYLARLIDSGESADFIARRMAIFASEDIG 272


>gi|157414507|ref|YP_001481763.1| recombination factor protein RarA [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|157385471|gb|ABV51786.1| ATPase, AAA family protein [Campylobacter jejuni subsp. jejuni
           81116]
 gi|307747149|gb|ADN90419.1| ATPase, AAA family protein [Campylobacter jejuni subsp. jejuni M1]
 gi|315932005|gb|EFV10958.1| ATPase family associated with various cellular activities (AAA)
           family protein [Campylobacter jejuni subsp. jejuni 327]
          Length = 393

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 76/318 (23%), Positives = 125/318 (39%), Gaps = 57/318 (17%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP   ++  GQ E     K F    K     L H +F G  G GKTT A+VVA+E G++F
Sbjct: 8   RPENFDDILGQYELIEIFKKFTALQK-----LPHSIFFGTAGSGKTTFARVVAKEFGLDF 62

Query: 83  RSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137
               G    K  +L  +L N ++   + ++FIDEIHRLS   +E+L   ME+++L L+  
Sbjct: 63  YEFDGGNF-KLEELRKILDNYKNSLYKPLIFIDEIHRLSKTQQEMLLIPMENYRLILIGA 121

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
             E P                      +L++ ++ R  +        +++L+T++ R  +
Sbjct: 122 STENPYF--------------------VLSSGIRSRS-MLFEFKSLGVKELETLLLRVQE 160

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257
               ++  EA   +   +    R    LL  V     V   K I+ E      LR  I  
Sbjct: 161 KMKFSIDKEAKDFLLKSA--DARAMLNLLEFVL----VLDEKHISLENLKK--LRNTISS 212

Query: 258 MGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR-- 315
            G    D  Y+                 SA +   R +  D    Y+ +      +    
Sbjct: 213 EGVSSKDTHYILA---------------SAMIKSLRGSDIDAAIYYLARLIDAGESADFI 257

Query: 316 GRLLMPIAWQHLGIDIPH 333
            R L+  + + +G   P+
Sbjct: 258 ARRLVIFSSEDVGNADPN 275


>gi|121613547|ref|YP_999917.1| recombination factor protein RarA [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|167004876|ref|ZP_02270634.1| recombination factor protein RarA [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|87250076|gb|EAQ73034.1| ATPase, AAA family protein [Campylobacter jejuni subsp. jejuni
           81-176]
          Length = 393

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 76/318 (23%), Positives = 125/318 (39%), Gaps = 57/318 (17%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP   ++  GQ E     K F    K     L H +F G  G GKTT A+VVA+E G++F
Sbjct: 8   RPENFDDILGQYELIEIFKKFTALQK-----LPHSIFFGTAGSGKTTFARVVAKEFGLDF 62

Query: 83  RSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137
               G    K  +L  +L N ++   + ++FIDEIHRLS   +E+L   ME+++L L+  
Sbjct: 63  YEFDGGNF-KLEELRKILDNYKNSLYKPLIFIDEIHRLSKTQQEMLLIPMENYRLILIGA 121

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
             E P                      +L++ ++ R  +         ++L+T++ R  +
Sbjct: 122 STENPYF--------------------VLSSGIRSRS-MLFEFKSLGAKELETLLLRVQE 160

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257
               ++  EA   +   +    R    LL  V     V   K I+ E      LR  I+ 
Sbjct: 161 KMKFSIDKEAKDFLLKSA--DARAMLNLLEFVL----VLDEKHISLENLKK--LRNTINS 212

Query: 258 MGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR-- 315
            G    D  Y+                 SA +   R +  D    Y+ +      +    
Sbjct: 213 EGVSSKDTHYILA---------------SAMIKSLRGSDVDAAIYYLARLIDAGESADFI 257

Query: 316 GRLLMPIAWQHLGIDIPH 333
            R L+  + + +G   P+
Sbjct: 258 ARRLVIFSSEDVGNADPN 275


>gi|86149644|ref|ZP_01067874.1| ATPase, AAA family protein [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|88597357|ref|ZP_01100592.1| ATPase, AAA family protein [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|218561877|ref|YP_002343656.1| recombination factor protein RarA [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|85839912|gb|EAQ57171.1| ATPase, AAA family protein [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|88190418|gb|EAQ94392.1| ATPase, AAA family protein [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|112359583|emb|CAL34367.1| helicase-like protein [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|315928130|gb|EFV07448.1| ATPase family associated with various cellular activities (AAA)
           family protein [Campylobacter jejuni subsp. jejuni
           DFVF1099]
 gi|315930207|gb|EFV09322.1| ATPase family associated with various cellular activities (AAA)
           family protein [Campylobacter jejuni subsp. jejuni 305]
          Length = 393

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 76/318 (23%), Positives = 125/318 (39%), Gaps = 57/318 (17%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP   ++  GQ E     K F    K     L H +F G  G GKTT A+VVA+E G++F
Sbjct: 8   RPENFDDILGQYELIEIFKKFTALQK-----LPHSIFFGTAGSGKTTFARVVAKEFGLDF 62

Query: 83  RSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137
               G    K  +L  +L N ++   + ++FIDEIHRLS   +E+L   ME+++L L+  
Sbjct: 63  YEFDGGNF-KLEELRKILDNYKNSLYKPLIFIDEIHRLSKTQQEMLLIPMENYRLILIGA 121

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
             E P                      +L++ ++ R  +         ++L+T++ R  +
Sbjct: 122 STENPYF--------------------VLSSGIRSRS-MLFEFKSLGAKELETLLLRVQE 160

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257
               ++  EA   +   +    R    LL  V     V   K I+ E      LR  I+ 
Sbjct: 161 KMKFSIDKEAKDFLLKSA--DARAMLNLLEFVL----VLDEKHISLENLKK--LRNTINS 212

Query: 258 MGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR-- 315
            G    D  Y+                 SA +   R +  D    Y+ +      +    
Sbjct: 213 EGVSSKDTHYILA---------------SAMIKSLRGSDVDAAIYYLARLIDAGESADFI 257

Query: 316 GRLLMPIAWQHLGIDIPH 333
            R L+  + + +G   P+
Sbjct: 258 ARRLVIFSSEDVGNADPN 275


>gi|256383802|gb|ACU78372.1| recombination factor protein RarA [Mycoplasma mycoides subsp. capri
           str. GM12]
 gi|256384632|gb|ACU79201.1| recombination factor protein RarA [Mycoplasma mycoides subsp. capri
           str. GM12]
 gi|296455903|gb|ADH22138.1| recombination factor protein RarA [synthetic Mycoplasma mycoides
           JCVI-syn1.0]
          Length = 411

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 70/320 (21%), Positives = 123/320 (38%), Gaps = 53/320 (16%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           LLRP+T ++  GQ E      +  +      +    ++F GP G+GKT+ A  +A +L +
Sbjct: 8   LLRPKTTKDIIGQTEILKPNGLINKMIL--NDYCTSLIFYGPSGVGKTSFAISLANDLKI 65

Query: 81  NFRSTSGPVIAKAGDLAALLTN--LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM- 137
           ++   +     K   L +++    L+DR +L IDEIHRL+   ++IL   ME   + +  
Sbjct: 66  DYEIFNAS-YDKKEKLTSIIQKALLQDRFILIIDEIHRLNKDKQDILLEYMEKGNIFVFS 124

Query: 138 -VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA 196
              E P         SR  LI   T                       I   K I+ +  
Sbjct: 125 TTTENPFFVINPALRSRSLLIELKTVNKNEL-----------------ISYAKKIIDQY- 166

Query: 197 KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV-RDFAEVAHAKTITREIADAALLRLAI 255
               + ++DEA   +A  S G  R     L  + R +++        + I   +    A 
Sbjct: 167 -QLKINISDEALDFLAQLSVGDVRTFLNYLELIDRLYSDEFIDIKKIKTIITVSKNPTAQ 225

Query: 256 DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY---MIQQGFIQR 312
           D    D  DL+  + + ++  G  V                 D    Y   +I+ G  + 
Sbjct: 226 DS--DDFHDLK--SALQKSIRGSDV-----------------DAALYYFSRLIETGDYE- 263

Query: 313 TPRGRLLMPIAWQHLGIDIP 332
               R ++ I+++ +G+  P
Sbjct: 264 -SLMRRMIIISYEDIGLANP 282


>gi|86151263|ref|ZP_01069478.1| ATPase, AAA family protein [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|315123797|ref|YP_004065801.1| ATPase, AAA family protein [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|85841610|gb|EAQ58857.1| ATPase, AAA family protein [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|315017519|gb|ADT65612.1| ATPase, AAA family protein [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 393

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 76/318 (23%), Positives = 125/318 (39%), Gaps = 57/318 (17%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP   ++  GQ E     K F    K     L H +F G  G GKTT A+VVA+E G++F
Sbjct: 8   RPENFDDILGQYELIEIFKKFTALQK-----LPHSIFFGTAGSGKTTFARVVAKEFGLDF 62

Query: 83  RSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137
               G    K  +L  +L N ++   + ++FIDEIHRLS   +E+L   ME+++L L+  
Sbjct: 63  YEFDGGNF-KLEELRKILDNYKNSLYKPLIFIDEIHRLSKTQQEMLLIPMENYRLILIGA 121

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
             E P                      +L++ ++ R  +        +++L+T++ R  +
Sbjct: 122 STENPYF--------------------VLSSGIRSRS-MLFEFKSLGVKELETLLLRVQE 160

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257
               ++  EA   +   +    R    LL  V     V   K I+ E      LR  I  
Sbjct: 161 KMKFSIDKEAKDFLLKSA--DARAMLNLLEFVL----VLDEKHISLENLKK--LRNTISS 212

Query: 258 MGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR-- 315
            G    D  Y+                 SA +   R +  D    Y+ +      +    
Sbjct: 213 EGVSSKDTHYILA---------------SAMIKSLRGSDVDAAIYYLARLIDAGESADFI 257

Query: 316 GRLLMPIAWQHLGIDIPH 333
            R L+  + + +G   P+
Sbjct: 258 ARRLVIFSSEDVGNADPN 275


>gi|118474633|ref|YP_892891.1| recombination factor protein RarA [Campylobacter fetus subsp. fetus
           82-40]
 gi|118413859|gb|ABK82279.1| ATPase, AAA family [Campylobacter fetus subsp. fetus 82-40]
          Length = 397

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 66/318 (20%), Positives = 113/318 (35%), Gaps = 56/318 (17%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP  + +  GQ +       FI++ K     + H LF G  G GKTT+A+++A+++   F
Sbjct: 8   RPNNINDMVGQKDIVELFSKFIKSKK-----IPHSLFFGATGCGKTTMAKIIAKQMNYEF 62

Query: 83  RSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137
               G  + K+ D+  +++  E    + ++FIDE HRLS   +E L   ME  +  +M  
Sbjct: 63  FELDGANL-KSEDIRKIISKFETTLYKPLIFIDEFHRLSKTQQETLLIPMEKGKCIVMGA 121

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
             E P         SR                      +         ++L  ++ +   
Sbjct: 122 TTENPKFVVSSGIRSRM---------------------MIFEFKPLSHDELTILLTKVQN 160

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257
           +    +T+EA   +   S G  R    LL       +      +         LR     
Sbjct: 161 VIKFEITNEAKDYLINSSGGDARSLLNLLEFALSADKSIGLNILKT-------LRSHRVS 213

Query: 258 MGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ--QGFIQRTPR 315
            G    D  Y               E  SA +   R +  D    Y+ +  QG  +    
Sbjct: 214 EGVSNSDTHY---------------ELTSALIKSLRGSDIDASIYYLARLIQGGEEPAFL 258

Query: 316 GRLLMPIAWQHLGIDIPH 333
            R ++  A + +G   P+
Sbjct: 259 ARRMVIFASEDIGNANPN 276


>gi|225164815|ref|ZP_03727041.1| AAA ATPase central domain protein [Opitutaceae bacterium TAV2]
 gi|224800567|gb|EEG18937.1| AAA ATPase central domain protein [Opitutaceae bacterium TAV2]
          Length = 401

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 62/290 (21%), Positives = 103/290 (35%), Gaps = 44/290 (15%)

Query: 51  AEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR---- 106
           +     +LF GPPG GKT+ A+ +AR+ G  F   +  V++   +L  +L          
Sbjct: 3   SNRFGSLLFYGPPGCGKTSFAEAIARQTGSRFVRLNA-VMSNVAELREILALARRTPESP 61

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVG 164
            +LFIDE+HR +   +++L P +E+  + L+      P        LSR  L        
Sbjct: 62  TLLFIDELHRFNKSQQDLLLPDVEEGYVRLIGATTHNPGFYVNPPLLSRSHLFRL----- 116

Query: 165 LLTNPLQ-DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAG 223
               PL+ D     +     + E       RG          +   ++A    G  R A 
Sbjct: 117 ---EPLRADAVATVLTRALADTE-------RGLGNRHHTADAKILADLATLCDGDLRRAL 166

Query: 224 RLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIE 283
             L  V   +    A     E+   A  R        D+                    +
Sbjct: 167 NALE-VIALSLPEAAPITEAELEVFARERRIRYDADEDEH------------------YD 207

Query: 284 TISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
           TISA +   R +  D    ++ +       PR   R L+ +A + +G+  
Sbjct: 208 TISAFIKSCRGSDPDAAMYWLAKMIEGGEDPRFIARRLVILASEDVGLAD 257


>gi|110005106|emb|CAK99435.1| putative conserved aaa type atpase protein [Spiroplasma citri]
          Length = 411

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 57/322 (17%), Positives = 116/322 (36%), Gaps = 46/322 (14%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +    +LRP T+ +  GQ    +     I        A   ++F G PG+GK+++A+ +A
Sbjct: 3   EPLAFVLRPTTITDIIGQSHLINEQNGVISRMLKYNYA-SSLIFYGDPGVGKSSIARALA 61

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
            +L + +   +   I K  DL  ++      +R ++ ++E+HR++   ++IL   +E+  
Sbjct: 62  NDLQLEYAIFNAG-INKKQDLEKIIKQAANFERFIIIVEEVHRMNKDRQDILLQYLENGH 120

Query: 134 LDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           L +     E P         SR  +I                           +  L+ I
Sbjct: 121 LIMFACTTENPYFVINPALRSRANIIKLERITVDEM-----------------LTGLQKI 163

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           + +  K   L +T++A   I   + G  RIA  +L    +                 +  
Sbjct: 164 ITK--KKLPLTITNDALLLICQLASGDLRIAINILELCLNLYPTEEITVTIINNLATSAN 221

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF-I 310
            +     G +  DL+  + + ++  G  V                 +    Y  +     
Sbjct: 222 LINF-AEGDEHHDLK--SALQKSIRGSDV-----------------NAALYYFARLLASG 261

Query: 311 QRTPRGRLLMPIAWQHLGIDIP 332
                 R ++ IA++ +G+  P
Sbjct: 262 DHEALLRRMLIIAYEDIGLANP 283


>gi|312868678|ref|ZP_07728871.1| putative recombination factor protein RarA [Lactobacillus oris
           PB013-T2-3]
 gi|311095792|gb|EFQ54043.1| putative recombination factor protein RarA [Lactobacillus oris
           PB013-T2-3]
          Length = 170

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/130 (28%), Positives = 64/130 (49%), Gaps = 4/130 (3%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           +     L+RP TLE+  GQ    +  +   +           +L  GPPG GKTTLA V+
Sbjct: 4   KQPLADLMRPTTLEQMVGQEHLLAPGRPLYQIITEHLSV--SLLLWGPPGSGKTTLAYVM 61

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           ++ L + F   +  +  K+     +  + ++  VL +DEIHRL+  +++ L P +E+  +
Sbjct: 62  SQTLQLPFEKFNASIQNKSQLQKLVDAHPDESFVLLLDEIHRLTKPLQDYLLPYLENGHI 121

Query: 135 DLM--VGEGP 142
            L+    E P
Sbjct: 122 LLVGTTTENP 131


>gi|193216561|ref|YP_001999803.1| recombination factor protein RarA [Mycoplasma arthritidis 158L3-1]
 gi|193001884|gb|ACF07099.1| ATPase, related to the helicase subunit of the Holliday junction
           resolvase [Mycoplasma arthritidis 158L3-1]
          Length = 402

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 67/318 (21%), Positives = 115/318 (36%), Gaps = 59/318 (18%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP  L++F          + F+       +     +F G PG GKTT++ ++A  L V+F
Sbjct: 10  RPIALDDFVCNDS-----QRFLFEKIIANDDFRSFIFYGKPGTGKTTISYILASSLKVSF 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGE 140
              +   I K  DL A    L+   +L IDEIHRL+   ++IL P +E+  + +     E
Sbjct: 65  DYFNAA-IEKKEDLVA---KLKLNKILIIDEIHRLNKDKQDILLPYIENDLITIYATTTE 120

Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA--KL 198
            P  +                        L+ R  I    N   I+DL   +++ A    
Sbjct: 121 NPYFKVN--------------------PALRSRCAIVEIKNP-SIDDLSKQLKKIALNNQ 159

Query: 199 TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKM 258
               ++DE    IA +S G  R A   L  +   ++         +    A+     D  
Sbjct: 160 LDSNLSDEIYHFIASQSNGDYRSAINSLDLISTLSKTKKLTLDEIKKILPAIQFTG-DSN 218

Query: 259 GFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY---MIQQGFIQRTPR 315
           G    D                    +SA     R +  +    Y   +++ G       
Sbjct: 219 GDAHFDH-------------------LSAFHKSLRGSDPNAALYYGFILVESGDF--DGL 257

Query: 316 GRLLMPIAWQHLGIDIPH 333
            R ++  A++ +G+  P+
Sbjct: 258 FRRMICAAYEDVGLANPN 275


>gi|87126144|gb|ABD20658.1| ATPase, AAA family [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
          Length = 391

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 60/290 (20%), Positives = 113/290 (38%), Gaps = 41/290 (14%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVL 109
           + L  ++F GPPG+GKT++A+ ++      FR  +  V     D+  ++   +   + +L
Sbjct: 5   KKLTSMIFYGPPGIGKTSIAKAISGSTQYKFRQLNA-VTNTKKDMQLVVEEAKMSGQVIL 63

Query: 110 FIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLT 167
            +DEIHRL    ++ L P +E+ ++ L+      P         SR  +           
Sbjct: 64  LLDEIHRLDKAKQDFLLPHLENGKIVLIGATTSNPYHAINPAIRSRAQIFELY------- 116

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
            PL D           E +      + G K     + ++A    + +S+G  R A   L 
Sbjct: 117 -PLNDEDVRQALTRAIEDD------ENGLKTYQPKIDEDAMTYFSTQSQGDVRSALNALE 169

Query: 228 RVRDFAEVAHAK--TITREIADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIE 283
                A+        +T + A   L + A   DK G    D+  ++   ++  G  V   
Sbjct: 170 LAVLSADNDKDGYRHVTLQDAKDCLQKGAFVSDKDGDMHYDV--MSAFQKSIRGSDV--- 224

Query: 284 TISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
                      A+  L    +I+ G +      R L+ I+++ +G+  P+
Sbjct: 225 ---------NAALHYLAR--LIEAGDLPTIV--RRLLVISYEDIGLASPN 261


>gi|331703454|ref|YP_004400141.1| ATPase [Mycoplasma mycoides subsp. capri LC str. 95010]
 gi|328802009|emb|CBW54163.1| ATPase, AAA family [Mycoplasma mycoides subsp. capri LC str. 95010]
          Length = 411

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 69/320 (21%), Positives = 120/320 (37%), Gaps = 53/320 (16%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           LLRP+T ++  GQ E      +  +      +    ++F GP G+GKT+ A  +A +L +
Sbjct: 8   LLRPKTTKDIIGQTEILKPNGLINKMIL--NDYCTSLIFYGPSGVGKTSFAISLANDLKI 65

Query: 81  NFRSTSGPVIAKAGDLAALLTN--LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM- 137
           ++   +     K   L +++    L+DR +L IDEIHRL+   ++IL   ME   + +  
Sbjct: 66  DYEIFNAS-YDKKEKLTSIIKKALLQDRFILIIDEIHRLNKDKQDILLEYMEKGNVFVFS 124

Query: 138 -VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA 196
              E P         SR  LI   +      N L       I                  
Sbjct: 125 TTTENPFFVINPALRSRSLLIELKSVN---KNELISYAKKVINQY--------------- 166

Query: 197 KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV-RDFAEVAHAKTITREIADAALLRLAI 255
               + ++DEA   +A  S G  R     L  + R +++        + I   +    A 
Sbjct: 167 -QLKINISDEALDFLAQLSVGDVRTFLNYLELINRLYSDEFIDIKKIKTIITVSKNPAAQ 225

Query: 256 DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY---MIQQGFIQR 312
           D    D  DL+  + + ++  G  V                 D    Y   +I+ G  + 
Sbjct: 226 DS--DDFHDLK--SALQKSIRGSDV-----------------DAALYYFSRLIETGDYE- 263

Query: 313 TPRGRLLMPIAWQHLGIDIP 332
               R ++ I ++ +G+  P
Sbjct: 264 -SLMRRMIIIGYEDIGLANP 282


>gi|67482225|ref|XP_656462.1| AAA family ATPase [Entamoeba histolytica HM-1:IMSS]
 gi|56473665|gb|EAL51080.1| AAA family ATPase, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 429

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 73/353 (20%), Positives = 136/353 (38%), Gaps = 64/353 (18%)

Query: 1   MMDREGLLS----RNVSQE-----DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARA 51
           +M++  + S    +N+  E            RP+ +E+  GQ++   +    I       
Sbjct: 3   LMEQTSIYSFIKSKNLKTEFSSTFGTLAERRRPQKIEDVVGQLKVRDD---IIHQVTVLG 59

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA-------KAGDLAALLTNLE 104
             +D ++F GPPG GKTT  +++ R    +F    G  I        K G +        
Sbjct: 60  -RVDSMIFFGPPGCGKTTFCKLIKRHFEKSFIELDGNSINTNIVKDFKKGIIKKNKETTH 118

Query: 105 DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164
            + ++FIDEIH +S  V+  L   +++  + L+   G + +     LS+  L+       
Sbjct: 119 SQTIIFIDEIHCISSTVQNFLIDLIKEKTICLI---GTTTQVPSFCLSKELLL------- 168

Query: 165 LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG--AKLTGLAVTDEAACEIAMRSRGTPRIA 222
                    F   I L       +K I++R   A+ +   V+DE   +I   S G  R+A
Sbjct: 169 ---------FMRVIVLERLNEVSVKEIIKRAINAEYSKYIVSDEVIDKIVESSDGDGRMA 219

Query: 223 GRLLRRVRDFAEVAHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPV 280
              L ++   AE+     ++ +     + + A   DK G +  +L               
Sbjct: 220 LNNLEKLIQCAELEKVNEVSIKFVHEVIGKRALNYDKRGDEHYNL--------------- 264

Query: 281 GIETISAGLSEPRDAIEDLIEPYMIQQGFI--QRTPRGRLLMPIAWQHLGIDI 331
               ISA     R + ED    ++ +      + +   R ++ IA + +G+  
Sbjct: 265 ----ISAFQKSIRGSDEDASVYWLERMILSGEKLSYITRRMLRIASEDIGMAD 313


>gi|258411000|ref|ZP_05681280.1| recombination protein MgsA [Staphylococcus aureus A9763]
 gi|257840150|gb|EEV64614.1| recombination protein MgsA [Staphylococcus aureus A9763]
          Length = 391

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 60/290 (20%), Positives = 113/290 (38%), Gaps = 41/290 (14%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVL 109
           + L  ++F GPPG+GKT++A+ ++      FR  +  V     D+  ++   +   + +L
Sbjct: 5   KKLTSMIFYGPPGIGKTSIAKAISGSTQYKFRQLNA-VTNTKKDMQLVVEEAKMSGQVIL 63

Query: 110 FIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLT 167
            +DEIHRL    ++ L P +E+ ++ L+      P         SR  +           
Sbjct: 64  LLDEIHRLDKAKQDFLLPHLENGKIVLIGATTSNPYHAINPAIRSRAQIFELY------- 116

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
            PL D           E +      + G K     + ++A    + +S+G  R A   L 
Sbjct: 117 -PLNDEDVRQALTRAIEDD------ENGLKTYQPKIDEDAMTYFSTQSQGDVRNALNALE 169

Query: 228 RVRDFAEVAHAK--TITREIADAALLRLAI--DKMGFDQLDLRYLTMIARNFGGGPVGIE 283
                A+        +T + A   L + A   DK G    D+  ++   ++  G  V   
Sbjct: 170 LAVLSADNDKDGYRHVTLQDAKDCLQKGAFVSDKDGDMHYDV--MSAFQKSIRGSDV--- 224

Query: 284 TISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
                      A+  L    +I+ G +      R L+ I+++ +G+  P+
Sbjct: 225 ---------NAALHYLAR--LIEAGDLPTIV--RRLLVISYEDIGLASPN 261


>gi|291278894|ref|YP_003495729.1| ATPase AAA family [Deferribacter desulfuricans SSM1]
 gi|290753596|dbj|BAI79973.1| ATPase, AAA family [Deferribacter desulfuricans SSM1]
          Length = 404

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 50/322 (15%), Positives = 116/322 (36%), Gaps = 44/322 (13%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +  L P+T +E  GQ    S+  +F     +       ++ +GPPG GKTT+A+++ ++ 
Sbjct: 4   LEALEPKTFDEIVGQEHLLSSNALFRNIVLSCD--FQSIILIGPPGCGKTTIAKLIGKQH 61

Query: 79  GVNFRSTSGPVIAKAGDLAALLTN---LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
            + F        +   D+  ++          ++FIDEIH  +   + +L   +++  + 
Sbjct: 62  SMIFYRLHAANCSS-SDIRKIVEETKGYGKTSIIFIDEIHHFNKSQQNLLLNIIDEGYVK 120

Query: 136 LM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           L+    E P    +    SR       + +  L  P +  F           + ++  ++
Sbjct: 121 LVGASTENPYYSLIPPLRSR-------SILFELNQPRRSDFEKLF-------KRVENWLK 166

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
              +++ +   D     +   + G  R    ++  +   ++      +     D  LL  
Sbjct: 167 EEFEVSDIVYDDNVVDLLIQNANGDVRKFYIMMESLAKISK-KVDNKLYLNHEDITLLPF 225

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
            I     +      L+ + ++  G                 +  D    + ++       
Sbjct: 226 EITFSTDEYYH--LLSAMIKSIRG-----------------SDPDAALMWALKLLKSGVD 266

Query: 314 PR--GRLLMPIAWQHLGIDIPH 333
           P+   R L+  A + +G  +P+
Sbjct: 267 PKIIFRRLLISASEDIGNAMPN 288


>gi|284925490|gb|ADC27842.1| recombination factor protein RarA [Campylobacter jejuni subsp.
           jejuni IA3902]
          Length = 393

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 76/318 (23%), Positives = 124/318 (38%), Gaps = 57/318 (17%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP   ++  GQ E     K F    K     L H +F G  G GKTT A+VVA+E G++F
Sbjct: 8   RPENFDDILGQYELIEIFKKFTALQK-----LPHSIFFGTAGSGKTTFARVVAKEFGLDF 62

Query: 83  RSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137
               G    K  +L  +L N ++   + ++FIDEIHRLS   +E+L   ME+++L L+  
Sbjct: 63  YEFDGGNF-KLEELRKILDNYKNSLYKPLIFIDEIHRLSKTQQEMLLIPMENYRLILIGA 121

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
             E P                      +L++ ++ R  +         ++L+T++ R  +
Sbjct: 122 STENPYF--------------------VLSSGIRSRS-MLFEFKSLGAKELETLLLRVQE 160

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257
               ++  EA   +   +    R    LL  V     V   K I+ E      LR  I  
Sbjct: 161 KMKFSIDKEAKNFLLKSA--DARAMLNLLEFVL----VLDEKHISLENLKK--LRNTISS 212

Query: 258 MGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR-- 315
            G    D  Y+                 SA +   R +  D    Y+ +      +    
Sbjct: 213 EGASSKDTHYILA---------------SAMIKSLRGSDVDAAIYYLARLIDAGESADFI 257

Query: 316 GRLLMPIAWQHLGIDIPH 333
            R L+  + + +G   P+
Sbjct: 258 ARRLVIFSSEDVGNADPN 275


>gi|146416793|ref|XP_001484366.1| hypothetical protein PGUG_03747 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 572

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 63/286 (22%), Positives = 102/286 (35%), Gaps = 35/286 (12%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           LS +         L+RP +L ++ GQ    ++    I     R   L  ++  GPPG+GK
Sbjct: 76  LSMDDDLNRPLTELVRPSSLHQYIGQNHLTNHRNGAITN-FIRLGYLPSMILHGPPGVGK 134

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------------RDVLFIDEI 114
           TTLA ++A+E G      S    A    +  LL  + D             R  +FIDEI
Sbjct: 135 TTLASIIAKEAGYVMVELSA-TDATVSTIRRLLNEIRDENRKRTKLGTPHLRVCVFIDEI 193

Query: 115 HRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           HR S + ++ L P +E+     +      P+ R      SR  L              +D
Sbjct: 194 HRFSKVQQDFLLPFVEEGLFVFLGATTFNPATRLRPAIRSRCQLFKLNELT-------KD 246

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR-- 230
                ++         + IV        L+ + E    I    +G  R A  ++  V   
Sbjct: 247 EVKSVLKKAALYENVRRRIV---YGKQFLSFSSEVLNHIINTCKGDARSAVNMIEMVSIN 303

Query: 231 ------DFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTM 270
                  +        +T E+ D  L  L     G + ++   L +
Sbjct: 304 LSSDAHKYTGTYDPIVVTSELVDTFLKELHRQNGGLNHVENNGLLV 349


>gi|332299032|ref|YP_004440954.1| DNA polymerase III, subunits gamma and tau [Treponema brennaborense
           DSM 12168]
 gi|332182135|gb|AEE17823.1| DNA polymerase III, subunits gamma and tau [Treponema brennaborense
           DSM 12168]
          Length = 672

 Score = 99.4 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 58/252 (23%), Positives = 100/252 (39%), Gaps = 29/252 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  ++  GQ    + LK  I++ K         LF GP G GKT+ A+++A+ L    
Sbjct: 11  RPQRFDDLVGQEFVAATLKNAIQSGKIAHAY----LFAGPRGCGKTSSARILAKALNCEK 66

Query: 83  RSTSGPVIAKAGDLAAL--LTNLEDRDVLFIDEIHRLSII-----VEEILYPAMEDFQLD 135
               GP     G+ AA   +T     DV+ ID     S+       +E+L+P        
Sbjct: 67  ----GPAAVPCGECAACREITRGSSLDVIEIDGASNTSVNDVRQIKDEVLFPPNSCRYKI 122

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             ++++        I ATT +  +   ++ R           +E
Sbjct: 123 YIIDEVHMLSTSAFNALLKTIEEPPPYVIFIFATTELHKVPATIKSRCQ-QFHFRLVAVE 181

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
            +K ++ + A    +   DEA   IA  S G+ R A  L  +V  F+       IT +  
Sbjct: 182 QIKELLAQAAAEIQVQADDEALYWIARESTGSIRDAYTLFDQVSSFS----DGHITFDKI 237

Query: 247 DAALLRLAIDKM 258
              L  + +D++
Sbjct: 238 REKLGLVGVDRL 249


>gi|308189678|ref|YP_003922609.1| ATPase [Mycoplasma fermentans JER]
 gi|319776862|ref|YP_004136513.1| atpase, aaa family [Mycoplasma fermentans M64]
 gi|307624420|gb|ADN68725.1| ATPase [Mycoplasma fermentans JER]
 gi|318037937|gb|ADV34136.1| ATPase, AAA family [Mycoplasma fermentans M64]
          Length = 404

 Score = 99.4 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 57/316 (18%), Positives = 104/316 (32%), Gaps = 49/316 (15%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
            + +RPRTL++  GQ    S LK  ++      +A    +F G  G GK++ A  +A +L
Sbjct: 5   ANEIRPRTLDDIVGQKHVVSLLKEIVK-----NKASTSFIFFGESGTGKSSAAVALANDL 59

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM- 137
            + +   +  +  K      L+  ++  D++ IDEIHRL+   ++IL   +E  ++ +  
Sbjct: 60  KLKYGYFNATINNK----DELVNTIQTNDIIIIDEIHRLNKDKQDILLSYLEYDKIIVYA 115

Query: 138 -VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA 196
              E P  +      SR  ++                FG+   +  Y  +    I     
Sbjct: 116 TTTENPYFKVNPALRSRMQILQFNKLSEEEIL-----FGLKKIIKTYYPKF--KIKDDIL 168

Query: 197 KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAID 256
           K+                S G  R     L+ +         K +T E     +  +   
Sbjct: 169 KVL------------IKNSTGDYRSCINNLQILTLL---NKDKEVTEESIKTLIPNVNFY 213

Query: 257 KMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRG 316
                      L+   ++  G  V        L                  G        
Sbjct: 214 SDKESNAHYNNLSAFHKSLRGSDVDAALYYGALILKTGD----------YMGLF------ 257

Query: 317 RLLMPIAWQHLGIDIP 332
           R L    ++ +G+  P
Sbjct: 258 RRLTAATYEDVGLADP 273


>gi|167948214|ref|ZP_02535288.1| Holliday junction DNA helicase B [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 76

 Score = 99.4 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 28/61 (45%), Positives = 42/61 (68%)

Query: 271 IARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           +   F GGPVG++ ++A + E R  IED++EP++IQQGF+ RTPRGR+    A+ H G+ 
Sbjct: 1   MIEKFDGGPVGVDNLAAAIGEERGTIEDVLEPFLIQQGFMMRTPRGRVATQAAYLHFGLA 60

Query: 331 I 331
            
Sbjct: 61  P 61


>gi|308189834|ref|YP_003922765.1| hypothetical protein MFE_02740 [Mycoplasma fermentans JER]
 gi|307624576|gb|ADN68881.1| hypothetical protein MFE_02740 [Mycoplasma fermentans JER]
          Length = 89

 Score = 99.0 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 36/89 (40%), Positives = 52/89 (58%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           +LRP    EF GQ +    LK  IE ++ R E LDH+LF GPPG GKT+LA ++A EL  
Sbjct: 1   MLRPANFFEFVGQEKLIYTLKTMIEGSRYRKEPLDHILFYGPPGTGKTSLASILANELDT 60

Query: 81  NFRSTSGPVIAKAGDLAALLTNLEDRDVL 109
                 G ++ K  D+  +  N+++ +VL
Sbjct: 61  KIHYLQGALLEKKSDILTVFANVKENEVL 89


>gi|190347392|gb|EDK39649.2| hypothetical protein PGUG_03747 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 572

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 62/285 (21%), Positives = 100/285 (35%), Gaps = 33/285 (11%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           LS +         L+RP +L ++ GQ    ++    I     R   L  ++  GPPG+GK
Sbjct: 76  LSMDDDLNRPLTELVRPSSLHQYIGQNHLTNHRNGAITN-FIRLGYLPSMILHGPPGVGK 134

Query: 68  TTLAQVVARELGVNFRSTSGP---------VIAKAGDLAALLTNLED---RDVLFIDEIH 115
           TTLA ++A+E G      S           +  +  D     T L     R  +FIDEIH
Sbjct: 135 TTLASIIAKEAGYVMVELSATDATVSTIRRLSNEIRDENRKRTKLGTPHLRVCVFIDEIH 194

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           R S + ++ L P +E+     +      P+ R      SR  L              +D 
Sbjct: 195 RFSKVQQDFLLPFVEEGLFVFLGATTFNPATRLRPAIRSRCQLFKLNELT-------KDE 247

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR--- 230
               ++         + IV        L+ + E    I    +G  R A  ++  V    
Sbjct: 248 VKSVLKKAALYENVRRRIV---YGKQFLSFSSEVLNHIINTCKGDARSAVNMIEMVSINL 304

Query: 231 -----DFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTM 270
                 +        +T E  D  L  L     G + ++   L +
Sbjct: 305 SSDAHKYTGTYDPIVVTSESVDTFLKELHRQNGGLNHVENNGLLV 349


>gi|213029124|ref|ZP_03343571.1| Holliday junction DNA helicase B [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 85

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 58/85 (68%), Positives = 72/85 (84%)

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           EIHRLS +VEE+LYPAMED+QLD+M+GEGP+ARS+KI+L  FTLI ATTR G LT+PL+D
Sbjct: 1   EIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRD 60

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAK 197
           RFGI  RL FY++ DL+ IV R A+
Sbjct: 61  RFGIVQRLEFYQVPDLQHIVGRSAR 85


>gi|83749189|ref|ZP_00946191.1| ATPase, AAA family [Ralstonia solanacearum UW551]
 gi|83724130|gb|EAP71306.1| ATPase, AAA family [Ralstonia solanacearum UW551]
          Length = 149

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 9/124 (7%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           L  +          LRP +++E  GQ       K     A A  E    ++  GPPG+GK
Sbjct: 5   LFPDAPAHMPLAERLRPHSVDEVIGQRHLLGQGKPL-RVAFASGEP-HSMILWGPPGVGK 62

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIV 121
           TTLA+++A      F + S  V++   D+   +   E       R ++F+DE+HR +  V
Sbjct: 63  TTLARLMADAFDAEFIALSA-VLSGVKDIREAVERAEQFRAHGRRTLVFVDEVHRFNKAV 121

Query: 122 EEIL 125
              +
Sbjct: 122 NHYI 125


>gi|300703421|ref|YP_003745023.1| ATPase [Ralstonia solanacearum CFBP2957]
 gi|299071084|emb|CBJ42393.1| putative ATPase, AAA family [Ralstonia solanacearum CFBP2957]
          Length = 137

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 9/115 (7%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP +++E  GQ       K     A A  E    ++  GPPG+GKTTLA+++A 
Sbjct: 2   PLAERLRPHSVDEVIGQRHLLGPGKPL-RVAFASGEP-HSMILWGPPGVGKTTLARLMAD 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEIL 125
                F + S  V++   D+   +   E       R ++F+DE+HR +  V+  +
Sbjct: 60  AFDAEFIALSA-VLSGVKDIREAVERAEQFRAHGRRTLVFVDEVHRFNKAVKSFI 113


>gi|283955370|ref|ZP_06372869.1| ATPase, AAA family protein [Campylobacter jejuni subsp. jejuni 414]
 gi|283793130|gb|EFC31900.1| ATPase, AAA family protein [Campylobacter jejuni subsp. jejuni 414]
          Length = 391

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 74/318 (23%), Positives = 124/318 (38%), Gaps = 57/318 (17%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP   ++  GQ E     K F    K     L H +F G  G GKTT A+VVA+E G++F
Sbjct: 8   RPENFDDILGQYELIEIFKKFTALQK-----LPHSIFFGIAGSGKTTFARVVAKEFGLDF 62

Query: 83  RSTSGPVIAKAGDLAALLTNLED---RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137
               G    K  +L  +L N ++   + ++FIDEIHRLS   +E+L   ME+++L L+  
Sbjct: 63  YEFDGGNF-KLEELRKILDNYKNSLYKPLIFIDEIHRLSKTQQEMLLIPMENYRLILIGA 121

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
             E P                      +L++ ++ R  +        +++L+ ++ R  +
Sbjct: 122 STENPYF--------------------VLSSGIRSRS-MLFEFKSLGVKELEILLSRVQE 160

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257
               ++ +EA   +   +    R    LL  V     V   K I         LR  I+ 
Sbjct: 161 KMKFSIDEEARDFLLKSA--DARAMLNLLEFVL----VLDEKHINLSNLKK--LRNTINS 212

Query: 258 MGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR-- 315
            G    D  Y+                 SA +   R +  D    Y+ +      +    
Sbjct: 213 EGVSSKDTHYILA---------------SAMIKSLRGSDVDAAIYYLARLIDAGESADFI 257

Query: 316 GRLLMPIAWQHLGIDIPH 333
            R L+  + + +G   P+
Sbjct: 258 ARRLVIFSSEDVGNADPN 275


>gi|293363689|ref|ZP_06610436.1| recombination factor protein RarA [Mycoplasma alligatoris A21JP2]
 gi|292552733|gb|EFF41496.1| recombination factor protein RarA [Mycoplasma alligatoris A21JP2]
          Length = 409

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 65/328 (19%), Positives = 114/328 (34%), Gaps = 70/328 (21%)

Query: 19  ISLLRPRTLEEFTGQVEACSNL-KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
            + LRP+ L +  GQ      L K+ +   K         +F G  G+GKT+ A  +A +
Sbjct: 5   ANELRPKKLSDIVGQKHVVELLQKIALNKVKM------SFIFFGESGIGKTSAAFALANQ 58

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           + +     +  +  K  DL   L N E   ++ IDEIHRL+   ++IL   +E  ++ + 
Sbjct: 59  MKLKTSFFNASIDNK-SDLVEKLANSE---IIIIDEIHRLNKDKQDILLSYLEFDKIIIY 114

Query: 138 --VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
               E P  R                        L+ R  I       E E  + ++   
Sbjct: 115 ATTTENPYFRVN--------------------PALRSRMQIVSFNKLSEEEIAQGLLLIK 154

Query: 196 AKLTG-LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            K    L ++ E   E++    G  R     L+                      L  L 
Sbjct: 155 EKHFPKLNISKETLFELSTYGAGDFRSCINNLQM---------------------LGLLC 193

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVG--IETISAGLSEPRDAIEDLIEPY--MI----- 305
            D+   ++ DL+ +      +           +SA     R +  +    Y  +I     
Sbjct: 194 KDQKEVNKDDLKKIIPNISFYSDSNSSAHYNNLSAFHKSLRGSDVNAALYYGFLILKTGD 253

Query: 306 QQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            QG I      R +  +A++ +G+  P+
Sbjct: 254 YQGLI------RRINCVAYEDIGLANPN 275


>gi|282851622|ref|ZP_06260987.1| recombination factor protein RarA [Lactobacillus gasseri 224-1]
 gi|282557590|gb|EFB63187.1| recombination factor protein RarA [Lactobacillus gasseri 224-1]
          Length = 401

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 54/286 (18%), Positives = 95/286 (33%), Gaps = 34/286 (11%)

Query: 54  LDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFID 112
           L  ++  GPPG+GKT++A  +A      FR  +     K    + A    +    +L +D
Sbjct: 7   LSSMILYGPPGIGKTSIASAIAGSTKYAFRKLNAATDTKKDLQIVAEEGKMSGTVILLLD 66

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           EIHRL    ++ L P +E   + L+    E P         SR  +           +  
Sbjct: 67  EIHRLDKTKQDFLLPLLESGNIILIESTTENPYISISPAIRSRCQIFELHRLKSTDISKA 126

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR-RV 229
            DR                T  + G     + +T +A   +  +  G  R     L   V
Sbjct: 127 IDR--------------ALTDSENGLGKYNVELTKDARNLLIDKGNGDLRCTLNALELAV 172

Query: 230 RDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGL 289
               +   +K+   ++           +      D             G    + +SA  
Sbjct: 173 LSTDQEKKSKSHKDKLIIDKAEMQDSIQFKSQNYD-----------SSGDGHYDLLSAFQ 221

Query: 290 SEPRDAIEDLIEPY---MIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
              R +  D    Y   + + G +      R L+ IA++ +G+  P
Sbjct: 222 KSIRGSDTDAALYYLGNLCESGDLVAIC--RRLLVIAYEDIGLANP 265


>gi|207742683|ref|YP_002259075.1| hypothetical protein RSIPO_00874 [Ralstonia solanacearum IPO1609]
 gi|206594077|emb|CAQ61004.1| hypothetical protein RSIPO_00874 [Ralstonia solanacearum IPO1609]
          Length = 137

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 9/115 (7%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP +++E  GQ       K     A A  E    ++  GPPG+GKTTLA+++A 
Sbjct: 2   PLAERLRPHSVDEVIGQRHLLGQGKPL-RVAFASGEP-HSMILWGPPGVGKTTLARLMAD 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEIL 125
                F + S  V++   D+   +   E       R ++F+DE+HR +  V   +
Sbjct: 60  AFDAEFIALSA-VLSGVKDIREAVERAEQFRAHGRRTLVFVDEVHRFNKAVNHYI 113


>gi|298387659|ref|ZP_06997210.1| ATPase, AAA family [Bacteroides sp. 1_1_14]
 gi|298259515|gb|EFI02388.1| ATPase, AAA family [Bacteroides sp. 1_1_14]
          Length = 106

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 10/107 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP+TL+++ GQ        +  +   A    +   +  GPPG+GKTTLAQ++A 
Sbjct: 3   PLAERLRPKTLDDYIGQKHLVGPGAILRKMIDA--GRISSFILWGPPGVGKTTLAQIIAN 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHR 116
           +L   F + S  V +   D+  ++   +          +LFIDEIHR
Sbjct: 61  KLETPFYTLSA-VTSGVKDVREVIERAKSNRFFSQSSPILFIDEIHR 106


>gi|167974477|ref|ZP_02556754.1| ATPase, AAA family [Ureaplasma urealyticum serovar 11 str. ATCC
           33695]
 gi|188997939|gb|EDU67036.1| ATPase, AAA family [Ureaplasma urealyticum serovar 11 str. ATCC
           33695]
          Length = 408

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 58/317 (18%), Positives = 110/317 (34%), Gaps = 54/317 (17%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFR 83
           P ++++  GQ +    + +  +        + +++F GPPG+GK++LA+V+A++L V F 
Sbjct: 12  PHSIDDIVGQKDLLDEIGIIRKMV--NHHQVFNLIFYGPPGVGKSSLAKVLAQDLKVPF- 68

Query: 84  STSGPVIAKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VG 139
           +   PV+     L  ++    D    ++ IDEIHRL+   ++IL P +E  ++ L     
Sbjct: 69  AFFNPVVNSKKQLMQIIEQALDLNNFIIIIDEIHRLNKDKQDILLPIIEANKIKLFATTT 128

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199
           E P         SR  L++          PL                    I +R   L 
Sbjct: 129 ENPFFVINPALRSRCQLLSL--------KPLTS----------------SQISERIKTLI 164

Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259
            +                        LR V +  E+ H      ++    L R+  +   
Sbjct: 165 NVEEV-----FEPQAFNLLITKTNGDLRAVINTLEIIHLLYKEHKVDYVLLKRIMQESYA 219

Query: 260 FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ---GFIQRTPRG 316
               D   +  +   F           +          D    Y+ +    G  +     
Sbjct: 220 LGVSDGDEIHDLKSAFHK---------SMRGSDC----DAALYYLARLIIIGDFEAIY-- 264

Query: 317 RLLMPIAWQHLGIDIPH 333
           R +     + +G+  P+
Sbjct: 265 RRISVCVHEDIGLANPN 281


>gi|167975025|ref|ZP_02557302.1| ATPase, AAA family [Ureaplasma urealyticum serovar 12 str. ATCC
           33696]
 gi|198273283|ref|ZP_03205819.1| ATPase, AAA family [Ureaplasma urealyticum serovar 4 str. ATCC
           27816]
 gi|195659922|gb|EDX53302.1| ATPase, AAA family [Ureaplasma urealyticum serovar 12 str. ATCC
           33696]
 gi|198249803|gb|EDY74583.1| ATPase, AAA family [Ureaplasma urealyticum serovar 4 str. ATCC
           27816]
          Length = 408

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 58/317 (18%), Positives = 110/317 (34%), Gaps = 54/317 (17%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFR 83
           P ++++  GQ +    + +  +        + +++F GPPG+GK++LA+V+A++L V F 
Sbjct: 12  PHSIDDIVGQKDLLDEIGIIRKMV--NHHQVFNLIFYGPPGVGKSSLAKVLAQDLKVPF- 68

Query: 84  STSGPVIAKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VG 139
           +   PV+     L  ++    D    ++ IDEIHRL+   ++IL P +E  ++ L     
Sbjct: 69  AFFNPVVNSKKQLMQIIEQALDLNNFIIIIDEIHRLNKDKQDILLPIIEANKIKLFATTT 128

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199
           E P         SR  L++          PL                    I +R   L 
Sbjct: 129 ENPFFVINPALRSRCQLLSL--------KPLTS----------------SQISERIKTLI 164

Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259
            +                        LR V +  E+ H      ++    L R+  +   
Sbjct: 165 NVEEV-----FEPQAFNLLITKTNGDLRAVINTLEIIHLLYKEHKVDYVLLKRIMQESYA 219

Query: 260 FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ---GFIQRTPRG 316
               D   +  +   F           +          D    Y+ +    G  +     
Sbjct: 220 LGVSDGDEIHDLKSAFHK---------SMRGSDC----DAALYYLARLIIIGDFEAIY-- 264

Query: 317 RLLMPIAWQHLGIDIPH 333
           R +     + +G+  P+
Sbjct: 265 RRISVCVHEDIGLANPN 281


>gi|209554055|ref|YP_002284591.1| recombination factor protein RarA [Ureaplasma urealyticum serovar
           10 str. ATCC 33699]
 gi|225550599|ref|ZP_03771548.1| ATPase, AAA family [Ureaplasma urealyticum serovar 2 str. ATCC
           27814]
 gi|209541556|gb|ACI59785.1| ATPase, AAA family [Ureaplasma urealyticum serovar 10 str. ATCC
           33699]
 gi|225379753|gb|EEH02115.1| ATPase, AAA family [Ureaplasma urealyticum serovar 2 str. ATCC
           27814]
          Length = 408

 Score = 97.5 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 59/314 (18%), Positives = 111/314 (35%), Gaps = 48/314 (15%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFR 83
           P ++++  GQ +    + +  +        + +++F GPPG+GK++LA+V+A++L V F 
Sbjct: 12  PHSIDDIVGQKDLLDEIGIIRKMV--NHHQVFNLIFYGPPGVGKSSLAKVLAQDLKVPF- 68

Query: 84  STSGPVIAKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VG 139
           +   PV+     L  ++    D    ++ IDEIHRL+   ++IL P +E  ++ L     
Sbjct: 69  AFFNPVVDSKKQLMQIIEQALDLNNFIIIIDEIHRLNKDKQDILLPIIEANKIKLFATTT 128

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199
           E P         SR  L++          PL                    I +R   L 
Sbjct: 129 ENPFFVINPALRSRCQLLSL--------KPLTS----------------SQISERIKTLI 164

Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259
            +                        LR V +  E+ H      ++    L R+  +   
Sbjct: 165 NVEEV-----FEPQAFNLLITKTNGDLRAVINTLEIIHLLYKEHKVDYVLLKRIMQESYA 219

Query: 260 FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLL 319
               D   +  +   F           +      DA    +   +I  G  +     R +
Sbjct: 220 LGVSDGDEIHDLKSAFHK---------SMRGSDCDAALYYLAR-LIIIGDFEAIY--RRI 267

Query: 320 MPIAWQHLGIDIPH 333
                + +G+  P+
Sbjct: 268 SVCVHEDIGLANPN 281


>gi|256811337|ref|YP_003128706.1| Replication factor C [Methanocaldococcus fervens AG86]
 gi|256794537|gb|ACV25206.1| Replication factor C [Methanocaldococcus fervens AG86]
          Length = 316

 Score = 97.5 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 64/285 (22%), Positives = 110/285 (38%), Gaps = 43/285 (15%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           +   +   RP+TL+E  GQ E    LK ++E      +++ H+LF GPPG+GKTT A  +
Sbjct: 2   DKPWVEKYRPKTLDEIVGQDEIVKRLKKYVE-----KKSMPHLLFSGPPGVGKTTAALCL 56

Query: 75  ARE-----LGVNFRSTSGPVIAKAGDLAALLTNLED--------RDVLFIDEIHRLSIIV 121
           AR+        NF   +         +   + +             ++F+DE   L+   
Sbjct: 57  ARDLFGENWRENFLELNASDERGIDVIRTKVKDFARTKPIGDVPFKIIFLDESDALTPDA 116

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           +  L   ME +                 ++ RF  I +      +  P+Q R  I  R +
Sbjct: 117 QNALRRTMEKYS----------------DVCRF--ILSCNYPSKIIPPIQSRCAI-FRFS 157

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA--- 238
             + ED+   ++  A+  GL +T+     I   S G  R A  +L+     +EV      
Sbjct: 158 PLKKEDIAKKLKEIAEKEGLKLTESGLEAIIYVSEGDMRKAINVLQTAAALSEVIDDEIV 217

Query: 239 -KTITREIADAALLRLAIDKMG--FDQLDLRYLTMIARNFGGGPV 280
            K  +R   +     + +   G   +  DL Y  M+     G  +
Sbjct: 218 YKVSSRARPEEVKKMMELALEGKFVEARDLLYKLMVEWGMSGEDI 262


>gi|330940285|gb|EGH43414.1| recombination factor protein RarA [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 371

 Score = 97.5 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 53/267 (19%), Positives = 83/267 (31%), Gaps = 45/267 (16%)

Query: 78  LGVNFRSTSGPVIAKAGDLAALLT-------NLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           +      T   V+A   ++   +            R +LF+DE+HR +   ++   P +E
Sbjct: 1   MSDAHFETVSAVLAGVKEIRQAVEVARQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVE 60

Query: 131 DFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           D  L  +    E PS       LSR  +    +        L +R               
Sbjct: 61  DGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVNRALTE----------- 109

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
               +RG     LA++DE    +   + G  R    LL    D AE         EI   
Sbjct: 110 ----ERGLGKRQLALSDEGFAMLMSAADGDGRRMLNLLENASDLAE------DGSEIDVG 159

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L  D                R   GG    + ISA     R +  D    +  +  
Sbjct: 160 LLQSLLGDSR-------------RRFDKGGEAFYDQISALHKSIRGSNPDAALYWFARMI 206

Query: 309 FIQRTP--RGRLLMPIAWQHLGIDIPH 333
                P    R ++ +A + +G   P 
Sbjct: 207 DGGCDPLYLARRVVRMASEDIGNADPR 233


>gi|167972549|ref|ZP_02554826.1| ATPase, AAA family [Ureaplasma urealyticum serovar 5 str. ATCC
           27817]
 gi|167988394|ref|ZP_02570065.1| ATPase, AAA family [Ureaplasma urealyticum serovar 7 str. ATCC
           27819]
 gi|195867731|ref|ZP_03079732.1| ATPase, AAA family [Ureaplasma urealyticum serovar 9 str. ATCC
           33175]
 gi|225551136|ref|ZP_03772082.1| ATPase, AAA family [Ureaplasma urealyticum serovar 8 str. ATCC
           27618]
 gi|184209307|gb|EDU06350.1| ATPase, AAA family [Ureaplasma urealyticum serovar 5 str. ATCC
           27817]
 gi|188018837|gb|EDU56877.1| ATPase, AAA family [Ureaplasma urealyticum serovar 7 str. ATCC
           27819]
 gi|195660586|gb|EDX53842.1| ATPase, AAA family [Ureaplasma urealyticum serovar 9 str. ATCC
           33175]
 gi|225378951|gb|EEH01316.1| ATPase, AAA family [Ureaplasma urealyticum serovar 8 str. ATCC
           27618]
          Length = 408

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 59/314 (18%), Positives = 111/314 (35%), Gaps = 48/314 (15%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFR 83
           P ++++  GQ +    + +  +        + +++F GPPG+GK++LA+V+A++L V F 
Sbjct: 12  PHSIDDIVGQKDLLDEIGIIRKMV--NHHQVFNLIFYGPPGVGKSSLAKVLAQDLKVPF- 68

Query: 84  STSGPVIAKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VG 139
           +   PV+     L  ++    D    ++ IDEIHRL+   ++IL P +E  ++ L     
Sbjct: 69  AFFNPVVDSKKQLMQIIEQALDLNNFIIIIDEIHRLNKDKQDILLPIIEANKIKLFATTT 128

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199
           E P         SR  L++          PL                    I +R   L 
Sbjct: 129 ENPFFVINPALRSRCQLLSL--------KPLTS----------------SQISERIKTLI 164

Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259
            +                        LR V +  E+ H      ++    L R+  +   
Sbjct: 165 NVEEV-----FEPQAFNLLITKTNGDLRAVINTLEIIHLLYKEHKVDYVLLKRIMQESYA 219

Query: 260 FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLL 319
               D   +  +   F           +      DA    +   +I  G  +     R +
Sbjct: 220 LGASDGDEIHDLKSAFHK---------SMRGSDCDAALYYLAR-LIIIGDFEAIY--RRI 267

Query: 320 MPIAWQHLGIDIPH 333
                + +G+  P+
Sbjct: 268 SVCVHEDIGLANPN 281


>gi|213621617|ref|ZP_03374400.1| Holliday junction DNA helicase B [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 64

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 33/63 (52%), Positives = 47/63 (74%)

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
           +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED++EPY+IQQGF+QRTP
Sbjct: 2   VDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTP 61

Query: 315 RGR 317
           RGR
Sbjct: 62  RGR 64


>gi|298229917|ref|ZP_06963598.1| recombination factor protein RarA [Streptococcus pneumoniae str.
           Canada MDR_19F]
          Length = 390

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 61/291 (20%), Positives = 106/291 (36%), Gaps = 42/291 (14%)

Query: 51  AEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDV 108
           A  L  ++  GPPG+GKT++A  +A      FR+ +  V +K   L  +    +     V
Sbjct: 3   ANRLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKR-LQEISEEAKFSGGLV 61

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLL 166
           L +DEIHRL    ++ L P +E   + ++    E P         SR  +          
Sbjct: 62  LLLDEIHRLDKTKQDFLLPLLESGLVIMIGATTENPFFSVTPAIRSRVQIFEL------- 114

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
             PL ++                   +RG     + + ++A   IA  + G  R A   L
Sbjct: 115 -EPLSNQDVKEALQIALSNP------ERGFD-FPIELDEDALDFIATSTNGDLRSAFNSL 166

Query: 227 RRVRDFAEVAHAKTI--TREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGI 282
                            T +I + +L R    +DK G    D+  L+ + ++  G  V  
Sbjct: 167 DLAVLSTPENDEGIRHITLDIMENSLQRSYITMDKDGDGHYDV--LSALQKSIRGSDVDA 224

Query: 283 ETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
                       ++       +I+ G +      R L  IA++ +G+  P 
Sbjct: 225 ------------SLHYAAR--LIEAGDLP--SLARRLTVIAYEDIGLANPE 259


>gi|238809646|dbj|BAH69436.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 225

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 67/141 (47%), Gaps = 11/141 (7%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
            + +RPRTL++  GQ    S LK  ++      +A    +F G  G GK++ A  +A +L
Sbjct: 5   ANEIRPRTLDDIVGQKHVVSLLKEIVK-----NKASTSFIFFGESGTGKSSAAVALANDL 59

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM- 137
            + +   +  +  K      L+  ++  D++ IDEIHRL+   ++IL   +E  ++ +  
Sbjct: 60  KLKYGYFNATINNK----DELVNTIQTNDIIIIDEIHRLNKDKQDILLSYLEYDKIIVYA 115

Query: 138 -VGEGPSARSVKINLSRFTLI 157
              E P  +      SR  ++
Sbjct: 116 TTTENPYFKVNPALRSRMQIL 136


>gi|13357754|ref|NP_078028.1| recombination factor protein RarA [Ureaplasma parvum serovar 3 str.
           ATCC 700970]
 gi|167972078|ref|ZP_02554355.1| ATPase, AAA family [Ureaplasma parvum serovar 6 str. ATCC 27818]
 gi|168282304|ref|ZP_02689971.1| ATPase, AAA family [Ureaplasma parvum serovar 14 str. ATCC 33697]
 gi|170762441|ref|YP_001752277.1| recombination factor protein RarA [Ureaplasma parvum serovar 3 str.
           ATCC 27815]
 gi|11280340|pir||B82922 conserved hypothetical ATP/GTP-binding protein UU196 [imported] -
           Ureaplasma urealyticum
 gi|6899161|gb|AAF30603.1|AE002119_8 conserved hypothetical ATP/GTP-binding protein [Ureaplasma parvum
           serovar 3 str. ATCC 700970]
 gi|168828018|gb|ACA33280.1| ATPase, AAA family [Ureaplasma parvum serovar 3 str. ATCC 27815]
 gi|182675769|gb|EDT87674.1| ATPase, AAA family [Ureaplasma parvum serovar 14 str. ATCC 33697]
 gi|186700699|gb|EDU18981.1| ATPase, AAA family [Ureaplasma parvum serovar 6 str. ATCC 27818]
          Length = 408

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 60/318 (18%), Positives = 117/318 (36%), Gaps = 56/318 (17%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFR 83
           P ++++  GQ      + +           + +++F GPPG+GK++LA+V+A++L V F 
Sbjct: 12  PHSIDDIVGQKYLLDEIGIIRRMV--NHHQVFNLIFYGPPGVGKSSLAKVLAQDLKVPF- 68

Query: 84  STSGPVIAKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VG 139
           +   PV+     L  ++    D    ++ IDEIHRL+   ++IL P +E  ++ L     
Sbjct: 69  AFFNPVVDSKKQLMQIIEQALDLNNFIIIIDEIHRLNKDKQDILLPIIEANKIKLFATTT 128

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR-LNFYEIEDLKTIVQRGAKL 198
           E P         SR  L++        ++ + +R    I     +E +    ++ +    
Sbjct: 129 ENPFFVINPALRSRCQLLSLKPLT---SSQISERIKTLINVEEVFEPQAFNLLINKTNGD 185

Query: 199 TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKM 258
               +      EI        ++   LL+R+                   AL     D++
Sbjct: 186 LRAVI---NTLEIIYLLYKEHKVDYVLLKRIMQ--------------ESYALGSSDGDEI 228

Query: 259 GFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ---GFIQRTPR 315
                DL+                   SA     R +  D    Y+ +    G  +    
Sbjct: 229 ----HDLK-------------------SAFHKSMRGSDCDAALYYLARLIIIGDFEAIY- 264

Query: 316 GRLLMPIAWQHLGIDIPH 333
            R +     + +G+  P+
Sbjct: 265 -RRVSVCVHEDIGLANPN 281


>gi|160902770|ref|YP_001568351.1| recombination factor protein RarA [Petrotoga mobilis SJ95]
 gi|160360414|gb|ABX32028.1| AAA ATPase central domain protein [Petrotoga mobilis SJ95]
          Length = 411

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 61/329 (18%), Positives = 118/329 (35%), Gaps = 70/329 (21%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
            ++RP+ ++E  G  +    LK +I+  K R       +  G PG GK+T+ + +  E+ 
Sbjct: 9   EIIRPKKVDEVLGNEKLKEILKTWIKNKKVR-----SFIIYGEPGSGKSTIVRALINEIK 63

Query: 80  VNFRSTS-GPVIAKAGDLAALLTN----LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
             +   S    I     +  ++           +LF+DEIHRL+   ++ L  ++E  +L
Sbjct: 64  DYYDVFSISGAIEGKKKIKDIIEQKNNLFTKPKLLFVDEIHRLNKAEQDTLLLSVETGEL 123

Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            L+    E P+       LSR  +      +                    + E L   +
Sbjct: 124 TLIGATTENPAISVNPALLSRVLVFKTKELITD------------------DYEKLFQQI 165

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           +   K   +      A             AG  +RR+ +  E A+               
Sbjct: 166 EDYYKDLKITKEARKAL---------IEYAGNDIRRIMNLIETAN--------------- 201

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIET------ISAGLSEPRDAIEDLIEPYMIQ 306
               + G + +DL +L    ++F G  +  +       ISA +   R +  D    Y+  
Sbjct: 202 ----EAGINSIDLEFL----KDFTGYRLTYDKNAKYSFISAYIKSMRGSDVDAALLYLAY 253

Query: 307 QGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                  P    R ++ ++ + +G+  P+
Sbjct: 254 MLESGEDPMYIARRMVILSAEDVGLADPN 282


>gi|168308459|ref|ZP_02691134.1| ATPase, AAA family [Ureaplasma parvum serovar 1 str. ATCC 27813]
 gi|171902652|gb|EDT48941.1| ATPase, AAA family [Ureaplasma parvum serovar 1 str. ATCC 27813]
          Length = 408

 Score = 95.9 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 60/318 (18%), Positives = 117/318 (36%), Gaps = 56/318 (17%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFR 83
           P ++++  GQ      + +           + +++F GPPG+GK++LA+V+A++L V F 
Sbjct: 12  PNSIDDIVGQKYLLDEIGIIRRMV--NHHQVFNLIFYGPPGVGKSSLAKVLAQDLKVPF- 68

Query: 84  STSGPVIAKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VG 139
           +   PV+     L  ++    D    ++ IDEIHRL+   ++IL P +E  ++ L     
Sbjct: 69  AFFNPVVDSKKQLMQIIEQALDLNNFIIIIDEIHRLNKDKQDILLPIIEANKIKLFATTT 128

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR-LNFYEIEDLKTIVQRGAKL 198
           E P         SR  L++        ++ + +R    I     +E +    ++ +    
Sbjct: 129 ENPFFVINPALRSRCQLLSLKPLT---SSQISERIKTLINVEEVFEPQAFNLLINKTNGD 185

Query: 199 TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKM 258
               +      EI        ++   LL+R+                   AL     D++
Sbjct: 186 LRAVI---NTLEIIYLLYKEHKVDYVLLKRIMQ--------------ESYALGSSDGDEI 228

Query: 259 GFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ---GFIQRTPR 315
                DL+                   SA     R +  D    Y+ +    G  +    
Sbjct: 229 ----HDLK-------------------SAFHKSMRGSDCDAALYYLARLIIIGDFEAIY- 264

Query: 316 GRLLMPIAWQHLGIDIPH 333
            R +     + +G+  P+
Sbjct: 265 -RRVSVCVHEDIGLANPN 281


>gi|313143847|ref|ZP_07806040.1| recombination factor protein RarA [Helicobacter cinaedi CCUG 18818]
 gi|313128878|gb|EFR46495.1| recombination factor protein RarA [Helicobacter cinaedi CCUG 18818]
          Length = 384

 Score = 95.9 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 62/295 (21%), Positives = 110/295 (37%), Gaps = 52/295 (17%)

Query: 50  RAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED---R 106
           +  AL H  F GPPG GKTTLA ++A+EL   F S +     K  +L   + + E+   +
Sbjct: 3   KHNALSHCFFYGPPGSGKTTLAALIAKELNKPFMSYNATSF-KIEELRQFVKSYENTLFQ 61

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
            ++FIDE+HRL+   +E+L P ME +   +++G                          L
Sbjct: 62  PIIFIDEVHRLTRTQQEVLLPIMESYS-AIILGASTYNPFHS-----------------L 103

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGA------KLTGLAVTDEAACEIAMRSRGTPR 220
           TN ++ R      L  +    L +I+++        K   + +  +A   +   S G  R
Sbjct: 104 TNAIRSRS-FLFELKPHSNAHLDSILEKALAYVKDSKHIHIELESQAREYLIHSSVGDAR 162

Query: 221 IAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV 280
               LL  +    E   +    + +   AL     D     +     ++ + ++  G  V
Sbjct: 163 AMLNLLDAIISTGEHHISLQGLKALRPYAL----HDGASESESHYTLISALIKSIRGSDV 218

Query: 281 GIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                                 Y+ +       P    R L+ +A + +G   P+
Sbjct: 219 NASV-----------------YYLARLIAGNENPEFIARRLVILASEDIGNANPN 256


>gi|290559904|gb|EFD93226.1| replication factor C small subunit [Candidatus Parvarchaeum
           acidophilus ARMAN-5]
          Length = 313

 Score = 95.9 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 52/236 (22%), Positives = 89/236 (37%), Gaps = 36/236 (15%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           D  +   RP++ +E  GQ +    LK     A +  + + H++  GPPG+GKTT A V+A
Sbjct: 2   DLWVEKYRPQSFDEVIGQKDIVEKLK-----AMSSKKEIQHMILSGPPGVGKTTCAVVLA 56

Query: 76  RE-----LGVNFRSTSGP-------VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           +E        NF   +         +  K  + A          ++  DE   L+   ++
Sbjct: 57  KEVFGSTWNQNFIELNASDDRKLSVIQGKVKEFARTKPIDSPFKIILFDEADSLTQEAQQ 116

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
            L   ME++                   S    + +      +  PLQ R  I +R    
Sbjct: 117 ALRRMMEEYS------------------STCRFLFSVNYQSNIIEPLQSRCAI-LRFQPL 157

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
              D+   + R A+   L +  EA   +   SRG  R    L++ + + +    AK
Sbjct: 158 SKTDVTKFIDRIAEKEKLEIDSEAKDALEYVSRGDLRNLVNLMQSLANVSNKIDAK 213


>gi|254168320|ref|ZP_04875166.1| Replication factor C family [Aciduliprofundum boonei T469]
 gi|254169364|ref|ZP_04876193.1| Replication factor C family [Aciduliprofundum boonei T469]
 gi|289595866|ref|YP_003482562.1| Replication factor C [Aciduliprofundum boonei T469]
 gi|197621683|gb|EDY34269.1| Replication factor C family [Aciduliprofundum boonei T469]
 gi|197622829|gb|EDY35398.1| Replication factor C family [Aciduliprofundum boonei T469]
 gi|289533653|gb|ADD08000.1| Replication factor C [Aciduliprofundum boonei T469]
          Length = 317

 Score = 95.5 bits (236), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 54/247 (21%), Positives = 92/247 (37%), Gaps = 37/247 (14%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           ED  +   RP++L+E  GQ E    LK +++A     + + H+LF GP G GKTT A  +
Sbjct: 2   EDVWVEKYRPKSLDEVVGQDEIVDRLKSYVKA-----KTMPHLLFAGPAGTGKTTCAIAL 56

Query: 75  ARE-----LGVNFRSTSGPVIAKAGDLAALLTNLED--------RDVLFIDEIHRLSIIV 121
           ARE        +F   +       G +   +               ++F+DE   L+   
Sbjct: 57  ARELFGENWRASFHELNASDERGIGIVRTKIKEYARTAAPNDVGFKIIFLDEADALTPDA 116

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           +  L   ME +                        I +      +  P+Q R  +  R  
Sbjct: 117 QAALRRTMEMYSRT------------------CRFILSCNYSSKIIEPIQSRCAV-FRFT 157

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
             + ED+K  ++  A   G  +T++A   I   S G  R A  +L+     ++      +
Sbjct: 158 PLKSEDIKKRLKYIADSEGKKITEDALNAIVYISGGDMRKAINILQMSAAISDTIDEGVV 217

Query: 242 TREIADA 248
            +    A
Sbjct: 218 YKATGLA 224


>gi|213621125|ref|ZP_03373908.1| recombination factor protein RarA [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 123

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/106 (31%), Positives = 49/106 (46%), Gaps = 7/106 (6%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
              + +RP  L ++ GQ    +  K    A +A    L  ++  GPPG GKTTLA+V+AR
Sbjct: 15  PLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIAR 72

Query: 77  ELGVNFRSTSG-----PVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
               +    S        I +A + A    N   R +LF+DE+H  
Sbjct: 73  YASADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHFA 118


>gi|294776213|ref|ZP_06741698.1| recombination factor protein RarA [Bacteroides vulgatus PC510]
 gi|294449896|gb|EFG18411.1| recombination factor protein RarA [Bacteroides vulgatus PC510]
          Length = 376

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 63/282 (22%), Positives = 100/282 (35%), Gaps = 50/282 (17%)

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRL 117
           +GKTTLAQ++A +L   F + S  V +   D+  ++              +LFIDEIHR 
Sbjct: 1   MGKTTLAQIIANKLETPFYTLSA-VTSGVKDVRDVIEKARSNRFFSQASPILFIDEIHRF 59

Query: 118 SIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
           S   ++ L  A+E   + L+    E PS   ++  LSR  L    +        L     
Sbjct: 60  SKSQQDSLLGAVETGVVTLIGATTENPSFEVIRPLLSRCQLYVLKSLEKEDLLELLHN-- 117

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
                       +   V    K   + + +  A  +   S G  R    +L  V +    
Sbjct: 118 -----------AIAKDV--ILKEKKIELKETDA--MLRFSGGDARKLLNILELVVEADAD 162

Query: 236 AHAKTITREIADAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
           A    IT E     L +   A DK G    D+                   ISA +   R
Sbjct: 163 AGPVVITDEKVTERLQQNPLAYDKDGEMHYDI-------------------ISAFIKSIR 203

Query: 294 DAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +  D    ++ +       P    R L+  A + +G+  P+
Sbjct: 204 GSDPDGALYWLARMVEAGEDPAFIARRLVISAAEDIGLANPN 245


>gi|329298645|ref|ZP_08255981.1| Holliday junction DNA helicase RuvB [Plautia stali symbiont]
          Length = 62

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/59 (52%), Positives = 43/59 (72%)

Query: 272 ARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
              F GGPVG++ ++A + E R+ IED+IEP++IQQG IQRTPRGR+    A++H GI 
Sbjct: 1   IDKFMGGPVGLDNLAAAIGEERETIEDVIEPFLIQQGLIQRTPRGRMATQHAYKHFGIS 59


>gi|171463748|ref|YP_001797861.1| recombination factor protein RarA [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171193286|gb|ACB44247.1| recombination factor protein RarA [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 123

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 10/110 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                LRP+T+EE  GQ    +N K    A    +     ++  GPPG+GKTTLA++ A+
Sbjct: 11  PSAEALRPKTIEEVIGQAHLLTNEKPLNLA--FASGKPHSIILWGPPGVGKTTLARLSAK 68

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSI 119
                F + S  V+A   ++   +   +          +LF+DEIHR + 
Sbjct: 69  AFDREFIAISA-VLAGVKEIRESIEQAQQNMAQYSKQTILFVDEIHRFNK 117


>gi|269986185|gb|EEZ92497.1| Replication factor C [Candidatus Parvarchaeum acidiphilum ARMAN-4]
          Length = 315

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 57/234 (24%), Positives = 92/234 (39%), Gaps = 36/234 (15%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR- 76
            I   RP++ +E  GQ E    LK     A A  + + H++  GPPG+GKTT A V+A+ 
Sbjct: 4   WIEKYRPQSFDEIIGQKEIVEKLK-----AMAEKKEIQHMILSGPPGVGKTTSAVVLAKA 58

Query: 77  -----------ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
                      EL  +       +  K  + A          ++  DE   L+   ++ L
Sbjct: 59  VFGPDWTQNFIELNASDDRKLSVIQGKVKEFARTKPIDAPFKIILFDEADSLTQEAQQAL 118

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
              ME++                IN  RF    +      +  PLQ R  I +R      
Sbjct: 119 RRMMEEY----------------INTCRFVF--SVNYQSNIIEPLQSRCAI-LRFQPLSK 159

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           ED+   ++R A+   L +  EA   +   SRG  R    L++ + + ++   AK
Sbjct: 160 EDVHKFIKRIAESEKLDIDKEAMDALDYVSRGDLRTLVNLMQSLSNVSKKIDAK 213


>gi|50365221|ref|YP_053646.1| recombination factor protein RarA [Mesoplasma florum L1]
 gi|50363777|gb|AAT75762.1| putative helicase subunit of Holliday junction resolvase
           [Mesoplasma florum L1]
          Length = 410

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 59/322 (18%), Positives = 116/322 (36%), Gaps = 49/322 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
               LLRP+T  E  GQ        +  +           ++F GP G+GKT+ A  +A 
Sbjct: 4   PLAYLLRPKTTSEIIGQENLLKEDGLIKKMI--SNNFCRSLIFYGPSGVGKTSFAIALAN 61

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           +L + +   +     K  +L  ++     ++R +L IDEIHRL+   ++IL   ME   +
Sbjct: 62  DLNIEYDLFNAS-YDKKENLTKIIDKAINKERFILIIDEIHRLNRDKQDILLNFMESGNV 120

Query: 135 DLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            L     E P         SR T++         +    ++                   
Sbjct: 121 YLFATTTENPFFTINPAIRSRATILELKRVSHDESFAFVNKLIKD--------------- 165

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
               K   + +  E+   +   + G  R    LL  +  F  +   + IT ++  + + +
Sbjct: 166 ----KKVDINIKPESLKYLCELNSGDIR---SLLNNIELFHNLYKGEEITIDLISSIISQ 218

Query: 253 LA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
                   G D  DL+  + + ++  G  V              ++       ++  G  
Sbjct: 219 GKNPSGATGDDFHDLK--SALQKSVRGSDVDA------------SLHYFSR--LLSIGDY 262

Query: 311 QRTPRGRLLMPIAWQHLGIDIP 332
           +     R ++ +A++ +G+  P
Sbjct: 263 E--TLMRRMVIMAYEDIGLANP 282


>gi|256371343|ref|YP_003109167.1| AAA ATPase central domain protein [Acidimicrobium ferrooxidans DSM
           10331]
 gi|256007927|gb|ACU53494.1| AAA ATPase central domain protein [Acidimicrobium ferrooxidans DSM
           10331]
          Length = 370

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 69/338 (20%), Positives = 109/338 (32%), Gaps = 59/338 (17%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            L   ++ +       LRP +L E  GQ  A + L+    A +  A     V+  GPPG+
Sbjct: 2   SLFEEHMVRARPLAEELRPTSLAEVLGQDHARARLEALATAPRTIA-----VIMTGPPGV 56

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSI 119
           GKTT+A ++AR  G +             DL              D  + F+DE+HR   
Sbjct: 57  GKTTIASLLARARGEHLVELHA-TDTGVRDLREARAEAARRARHGDGTLWFVDEVHRFGR 115

Query: 120 IVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
              ++L   +E  ++  +    E P+       LSR  ++                    
Sbjct: 116 TQLDLLLAPIERGEISFIGATTENPAVTLSPALLSRCDVVRLRA---------------- 159

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                 E   L+ + +R     GL   D A   +   +RG  R   R+L R    A    
Sbjct: 160 -----LEPPVLRAVAERALAHLGLIADDAAIAWLVAAARGDARALLRILERAAPAAAQRP 214

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
                 E          I  +G D      L                 SA +   R +  
Sbjct: 215 LTVELLERISE------IAALGLDDSTHYELA----------------SALIKSMRQSRP 252

Query: 298 DLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
                ++         PR   R L+  A + +G+  P 
Sbjct: 253 TEAIRWLAAALAAGEDPRFIARRLVIFASEDVGLADPE 290


>gi|42560990|ref|NP_975441.1| recombination factor protein RarA [Mycoplasma mycoides subsp.
           mycoides SC str. PG1]
 gi|42492487|emb|CAE77083.1| putative ATPase, AAA family [Mycoplasma mycoides subsp. mycoides SC
           str. PG1]
 gi|301320816|gb|ADK69459.1| recombination factor protein RarA [Mycoplasma mycoides subsp.
           mycoides SC str. Gladysdale]
          Length = 411

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 65/318 (20%), Positives = 113/318 (35%), Gaps = 49/318 (15%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           LLRP+T ++  GQ E      +  +           ++F GP G+GKT+ A  +A +L +
Sbjct: 8   LLRPKTTKDIIGQTEILKPKGLINKMIL--NNYCTSLIFYGPSGVGKTSFAISLANDLKI 65

Query: 81  NFRSTSGPVIAKAGDLAALLTNLED-RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137
           ++   +     K      + T L+  R +L IDEIHRL+   ++IL   ME   + +   
Sbjct: 66  DYEIFNASYDKKEKLTNIIQTALKQKRFILIIDEIHRLNKDKQDILLEYMEKGNIFVFST 125

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
             E P         SR  LI                           I   K ++ +   
Sbjct: 126 TTENPFFVINPALRSRSLLIELKPVNKEEL-----------------ISYAKKVINQY-- 166

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257
              + ++DEA   +A  S G  R     L  + D         I        + +    +
Sbjct: 167 QLKINISDEALDFLAQISVGDIRTFLNYLE-LIDRLYSNEFIDIKEIKTIITVSKNPTAQ 225

Query: 258 MGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY---MIQQGFIQRTP 314
              D  DL+  + + ++  G  V                 D    Y   +I+ G  +   
Sbjct: 226 NSDDFHDLK--SALQKSIRGSDV-----------------DAALYYFSRLIETGDYE--S 264

Query: 315 RGRLLMPIAWQHLGIDIP 332
             R ++ I ++ +G+  P
Sbjct: 265 LMRRMIIIGYEDIGLANP 282


>gi|189036168|gb|ACD75434.1| AMDV4_5 [uncultured virus]
          Length = 294

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 59/147 (40%), Gaps = 12/147 (8%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                 RP+ L+E  GQ    +    F    K+      HV+F GPPG+GKTT+A  +A 
Sbjct: 2   QWTEEFRPQNLDEVVGQERIVT---FFRNLGKSDISKWPHVIFYGPPGVGKTTMAHAIAN 58

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAM 129
           E  +     +     K  D+   + ++         R +LF+DE   L+   + +L   M
Sbjct: 59  EYDIEIIDMNASQYRKIDDMENQIFSIVKQIPEKGARKILFMDEADALTPNSQWLLRRMM 118

Query: 130 EDFQ--LDLMVGEGPSARSVKINLSRF 154
           ED+      M      A+ +     R 
Sbjct: 119 EDYSNVTLFMFACNYDAKIIPALYDRC 145


>gi|313672297|ref|YP_004050408.1| ATPase AAA [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939053|gb|ADR18245.1| AAA ATPase central domain protein [Calditerrivibrio nitroreducens
           DSM 19672]
          Length = 403

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 60/320 (18%), Positives = 112/320 (35%), Gaps = 54/320 (16%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFR 83
           P+ ++E  GQ     + K             D ++  GP G GK+T A+++  EL + F 
Sbjct: 10  PQKIDEIIGQDSLIKSPKYLF----VLKGDFDILILSGPTGTGKSTFARLLGDELCLPFY 65

Query: 84  STSGPVIA--KAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VG 139
                     +   +           ++FIDEIHR + + +++L   +++    ++    
Sbjct: 66  RLHASSSGSQEIKKIVDTAKKTGKCSIIFIDEIHRFTKVQQDLLLDVVDEKYAKIIGAST 125

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199
           E P                       LT  L+ R    ++      + LKTI ++     
Sbjct: 126 ENPYF--------------------SLTPALRSRS-YFMKFKPLSHDALKTIAEKA---L 161

Query: 200 GLAVTDEAACEIAMRSRGTP---RIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAID 256
              V ++ + EI  R +      +IA    R++ +F EVA +      I D  L      
Sbjct: 162 AYIVKEKNSLEIINRDKLIEKGIKIANGDARKMLNFLEVATSGESKDGILDPILDAEDTI 221

Query: 257 KMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY---MIQQGFIQRT 313
             G    D  Y               + +SA +   R +  D    +   +++ G +  +
Sbjct: 222 AGGIYTEDEHY---------------DLLSALIKSVRGSDPDAALVWCFKLLKSG-VDPS 265

Query: 314 PRGRLLMPIAWQHLGIDIPH 333
              R L     + +G   P 
Sbjct: 266 VIFRRLAISCSEDIGNAYPD 285


>gi|322794857|gb|EFZ17801.1| hypothetical protein SINV_14894 [Solenopsis invicta]
          Length = 296

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 49/303 (16%), Positives = 96/303 (31%), Gaps = 46/303 (15%)

Query: 67  KTTLAQVVARELGVNFRSTS-----GPVIAKAGDLAALL------TNLEDRDVLFIDEIH 115
           +T+LA V+A     +             +A   ++  ++           R ++F+DEIH
Sbjct: 1   QTSLANVIAHMCKNDASRKLRYVKLSAAMAGVQEVKEVIGIASNHAKYGQRTIVFMDEIH 60

Query: 116 RLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFT-----LIAATTRVGLLTN 168
           R +   +++  P +E   + L+    E PS       LSR        ++    + +L  
Sbjct: 61  RFNKTQQDVFLPHVESGTITLIGATTENPSFSLNSALLSRCRVIVLHKLSIANLLSILKR 120

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAV------------TDEAACEIAMRSR 216
            +    GI   L+  E     T  +   +  G+ +             +     +A    
Sbjct: 121 AVISLKGIIHALDKNESTLRDTSEENALEQVGVDMDSASSCDTKFIIDEPTIEWLAGTCD 180

Query: 217 GTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAID----KMGFDQLDLRYLTMIA 272
           G  RIA   L                +     A    + D     +  + +         
Sbjct: 181 GDARIALGGLEMA----------VRCKAPNKEAEEAESFDIGPTVITLNDVQESLKKTHM 230

Query: 273 RNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGID 330
                G    + ISA     R + E+    ++ +       P    R L+ +A + +G+ 
Sbjct: 231 LYDKKGDNHYDMISALHKSVRASDENASLYWLTRMISGGEDPVYIARRLVRMASEDIGLA 290

Query: 331 IPH 333
            P 
Sbjct: 291 DPK 293


>gi|85057568|ref|YP_456484.1| recombination factor protein RarA [Aster yellows witches'-broom
           phytoplasma AYWB]
 gi|42632634|gb|AAS22248.1| AAA type ATPase [Aster yellows witches'-broom phytoplasma]
 gi|84789673|gb|ABC65405.1| ATPase, AAA family [Aster yellows witches'-broom phytoplasma AYWB]
          Length = 414

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 63/321 (19%), Positives = 113/321 (35%), Gaps = 54/321 (16%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            LRP T+ +  GQ    ++    I        A   ++F G PG+GK++LAQV+A +L +
Sbjct: 9   ALRPSTITDIIGQSHLINDQNGIISRMLKNNYA-SSLIFYGVPGIGKSSLAQVLANDLQI 67

Query: 81  NFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM- 137
            +   +   I K   L  ++       + +L I+EIHR++   ++IL   +E+  L +  
Sbjct: 68  KYDIFNAA-IDKKSKLEKIIQQALNFKKFILIIEEIHRMNKDRQDILLQYLENGHLIMFA 126

Query: 138 -VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL----KTIV 192
              E P                      ++   ++ R  I         E L    K IV
Sbjct: 127 CTTENPYF--------------------VINPSIRSRVNIIKLERITTEEMLTGLNKLIV 166

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
               K   L +  +A   I   S G  RIA  +L        +   + IT++I       
Sbjct: 167 N---KKLPLNILQDALLLICQLSSGDLRIAINMLELCL---HLYPGEEITKKIIKKISSS 220

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF-IQ 311
             +     +       + + ++  G  V                 D    Y  +      
Sbjct: 221 ANLINFKDNDEHHNLKSALQKSIRGSDV-----------------DAALHYFARLLASGD 263

Query: 312 RTPRGRLLMPIAWQHLGIDIP 332
                R ++  A++ +G+  P
Sbjct: 264 HEALIRRMLITAYEDIGLANP 284


>gi|328947062|ref|YP_004364399.1| DNA polymerase III subunits gamma/tau [Treponema succinifaciens DSM
           2489]
 gi|328447386|gb|AEB13102.1| DNA polymerase III, subunits gamma and tau [Treponema
           succinifaciens DSM 2489]
          Length = 572

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 60/252 (23%), Positives = 96/252 (38%), Gaps = 29/252 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  +   GQ      LK  I++ K         LF GP G GKT+ A+++A+ L    
Sbjct: 11  RPQNFDNLIGQEFVAETLKNSIQSKKIAHAY----LFSGPRGCGKTSTARILAKALNCQK 66

Query: 83  RSTSGPVIAKAGDLAAL--LTNLEDRDVLFIDEIHRLSII-----VEEILYPAMEDFQLD 135
               GP     G+ AA   +T     DV+ ID     S+       +E+L+P        
Sbjct: 67  ----GPTAFPCGECAACKEITAGSSLDVIEIDGASNTSVNDVRQIKDEVLFPPNSCRYKI 122

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             ++++        I ATT +  +   ++ R           IE
Sbjct: 123 YIIDEVHMLSTSAFNALLKTIEEPPPYCIFIFATTEIQKVPATIKSRCQ-QFNFRLVPIE 181

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
            +K  +   A   G+   DEA   IA  S G+ R +  L  +V  F+       IT E  
Sbjct: 182 KVKQQLAEAANELGIKAEDEALYWIARESTGSMRDSYTLFDQVAAFS----GGEITYEKI 237

Query: 247 DAALLRLAIDKM 258
              L  + +D +
Sbjct: 238 RDKLGLVGVDCL 249


>gi|163796890|ref|ZP_02190847.1| AAA ATPase, central region [alpha proteobacterium BAL199]
 gi|159177879|gb|EDP62428.1| AAA ATPase, central region [alpha proteobacterium BAL199]
          Length = 403

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 57/291 (19%), Positives = 87/291 (29%), Gaps = 52/291 (17%)

Query: 54  LDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR------D 107
           L   +  GPPG GKTT+A+++A    + F   S  V +   DL         R       
Sbjct: 17  LASCILWGPPGCGKTTIARLLAEHTDLEFVPLSA-VFSGVADLKKHFEAARGRRAGGRGT 75

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGL 165
           +LF+DE+HR +   ++   P +ED  + L+    E PS       LSR  +         
Sbjct: 76  LLFVDEVHRFNRAQQDGFLPVVEDGTITLVGATTENPSFELNAALLSRCQVFVLRRLDDA 135

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
             + L  R                           L V  +    +   + G  R    L
Sbjct: 136 ALDKLLARAEETEGRA-------------------LPVDSDGRAALRAMADGDGRFLLNL 176

Query: 226 LRRVRDF-AEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIET 284
              V     EV                    DK   +  +L                   
Sbjct: 177 AEEVFALRPEVPLDAAGVAASVHR--RAPVYDKDREEHYNL------------------- 215

Query: 285 ISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRG--RLLMPIAWQHLGIDIPH 333
           ISA     R +  D    ++ +       P    R L   A + +G+  P 
Sbjct: 216 ISALHKSLRGSDADAALYWLARMLAGGEDPAYILRRLTRFAVEDVGLAEPQ 266


>gi|83319965|ref|YP_424487.1| recombination factor protein RarA [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
 gi|83283851|gb|ABC01783.1| ATPase, AAA family, putative [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
          Length = 412

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 64/319 (20%), Positives = 117/319 (36%), Gaps = 51/319 (15%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           LLRP++ ++  GQ E   +  +  +           ++F GP G+GKT+ A  +A +L +
Sbjct: 8   LLRPKSTKDIIGQTEILKSNGLINKMIL--NNYCTSLIFFGPSGVGKTSFAISLANDLKI 65

Query: 81  NFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM- 137
           +    +     K   L  ++ N   ++R +L IDEIHRL+   ++IL   ME   + +  
Sbjct: 66  DCEIFNAS-YDKKEKLINIIQNALKKERFILIIDEIHRLNKDKQDILLEYMEKGNIFVFS 124

Query: 138 -VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA 196
              E P         SR  LI                           I   K ++ +  
Sbjct: 125 TTTENPFFVVNPALRSRSLLIELKPVNKDEL-----------------ISYAKKVINQY- 166

Query: 197 KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAID 256
               + ++DEA   +A  S G  R     L  + D         I +      + +    
Sbjct: 167 -QLKIKISDEALDFLAQLSVGDVRTFLNYLE-LIDKLYSNEFIDIEKIKTIITVSKNPTA 224

Query: 257 KMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY---MIQQGFIQRT 313
           +   D  DL+  + + ++  G  V                 D    Y   +I+ G  +  
Sbjct: 225 QDSDDFHDLK--SALQKSIRGSDV-----------------DAALYYFSRLIELGDYE-- 263

Query: 314 PRGRLLMPIAWQHLGIDIP 332
              R ++ I+++ +G+  P
Sbjct: 264 SLMRRMIIISYEDIGLANP 282


>gi|159107696|ref|XP_001704125.1| ATPase, AAA family [Giardia lamblia ATCC 50803]
 gi|157432177|gb|EDO76451.1| ATPase, AAA family [Giardia lamblia ATCC 50803]
          Length = 509

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 68/330 (20%), Positives = 117/330 (35%), Gaps = 45/330 (13%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARA---EALDHVLFVGPPGLGKTTLAQVVARE 77
            LRP T++E  G     S     I     ++     L  ++  GPPG GKT+ A++ A+ 
Sbjct: 100 RLRPTTIDEIIGNHHILSLTDGVISRIYEQSRTTHVLQSIIITGPPGTGKTSFARLYAKS 159

Query: 78  LGVNFR-STSGPVIAKAGDLAALLTNL---------EDRDVLFIDEIHRLSIIVEEILYP 127
              ++R     P  A   +L  +   +           R  LF+DE HR +   ++ L  
Sbjct: 160 FDPSYRLIEFKPGQATVAELNKVTERIYTDRANSLTSARVCLFVDEAHRCTKAQQDRLLS 219

Query: 128 AMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE- 184
           A+E+  L L+      P    ++   SR  L++         N L  +  + I +     
Sbjct: 220 AVEEGVLTLILATTSSPYTAIIEGLRSRCFLLSF--------NALTSKDILQICVRGLNS 271

Query: 185 -IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            ++ L T V        + V   A  +I + +RG  R A  LL        +        
Sbjct: 272 MLDKLDTSVP-----LDICVEPSAIAKIVVAARGDGRKALSLLELSVTGGRITEQGVAL- 325

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
                 LL                L      + G    I+ I A  S+P+ AI      +
Sbjct: 326 ------LLSGGAHGDAIMHCT---LNQEQVKYEGVSGMIKAIRA--SDPQGAI--FYLAF 372

Query: 304 MIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +++   +      R L+  A + +G+    
Sbjct: 373 LLRTA-VDPLYIARRLIISASEDIGLADSQ 401


>gi|323303345|gb|EGA57141.1| Mgs1p [Saccharomyces cerevisiae FostersB]
 gi|323335886|gb|EGA77164.1| Mgs1p [Saccharomyces cerevisiae Vin13]
          Length = 415

 Score = 92.4 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 58/296 (19%), Positives = 101/296 (34%), Gaps = 40/296 (13%)

Query: 57  VLFVGPPGLGKTTLAQVV-------ARELGVNFRSTSGPVIAKAG---DLAALLTN---- 102
           ++  GPPG+GKT+LA+++       + E  V  R       A      +L  +       
Sbjct: 1   MILWGPPGVGKTSLARLLTKTATTSSNESNVGSRYFMIETSATKANTQELRGIFEKSKKE 60

Query: 103 ---LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLI 157
               + R VLFIDEIHR + + +++L P +E+  + L+    E PS +     +SR  + 
Sbjct: 61  YQLTKRRTVLFIDEIHRFNKVQQDLLLPHVENGDIILIGATTENPSFQLNNALISRCLIF 120

Query: 158 AATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRG 217
                       +  R    +       + +  I         L ++      +   S G
Sbjct: 121 VLEKLNVNELCIVLSRGIALLNK---CRKQVWNI------ENPLKLSRSILEYVVDLSVG 171

Query: 218 TPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGG 277
             R A  +L  +        A      I D   +       G +                
Sbjct: 172 DTRRALNMLEMIEVSTRERKADEEELSIDDVRDIIKNNSSNGLNTY----------YDPK 221

Query: 278 GPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
           G    +TISA     R   E+    Y+ +       P    R ++ IA + +G+  
Sbjct: 222 GDNHYDTISAFHKSIRGGDENASLYYLARMLQGGEDPLYVARRMIRIASEDIGLRD 277


>gi|320536106|ref|ZP_08036159.1| DNA polymerase III, subunit gamma and tau [Treponema phagedenis
           F0421]
 gi|320147023|gb|EFW38586.1| DNA polymerase III, subunit gamma and tau [Treponema phagedenis
           F0421]
          Length = 589

 Score = 92.4 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 62/253 (24%), Positives = 98/253 (38%), Gaps = 29/253 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  E+  GQ    + L+  I+A K         LF GP G GKT+ A+++A+ L    
Sbjct: 11  RPQRFEDLLGQDFVAATLQKSIQAGKIAHAY----LFSGPRGCGKTSSARILAKALNCE- 65

Query: 83  RSTSGPVIAKAGDLAAL--LTNLEDRDVLFIDEIHRLSIIVE-----EILYPAMEDFQLD 135
              SGP     G   A   +T     DV+ ID     S+        EIL+P        
Sbjct: 66  ---SGPAPTPCGTCTACTEITAGSSLDVIEIDGASNTSVNDMRQIKDEILFPPNASRYKI 122

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             ++++        I ATT +  +   ++ R           +E
Sbjct: 123 YIIDEVHMLSTSAFNALLKTIEEPPPYVIFIFATTELHKVPATIKSRCQ-QFNFKLVSVE 181

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
            LK  + + A  +G+   DEA   IA  + G+ R A  L  ++  F+       IT E  
Sbjct: 182 QLKEALAQAAMESGIQADDEALYWIANEATGSVRDAYTLFDQIVAFS----DGHITFEKI 237

Query: 247 DAALLRLAIDKMG 259
              L    +D +G
Sbjct: 238 QEKLGLTGVDSIG 250


>gi|282164500|ref|YP_003356885.1| replication factor C small subunit [Methanocella paludicola SANAE]
 gi|282156814|dbj|BAI61902.1| replication factor C small subunit [Methanocella paludicola SANAE]
          Length = 332

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 58/282 (20%), Positives = 102/282 (36%), Gaps = 49/282 (17%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
            ++ +D      RP+TL+E  GQ +    LK +++        L H+LF GPPG+GKT  
Sbjct: 10  EMASDDVWTEKYRPKTLDEVIGQEQIVRRLKSYVKTG-----NLPHLLFSGPPGVGKTAC 64

Query: 71  AQVVAR-----ELGVNFRSTSGPVIAKAGDLAALLTNL--------EDRDVLFIDEIHRL 117
           A  +A+         NF   +         +   + N             ++F+DE   L
Sbjct: 65  AVALAKDMFGDTWQNNFTELNASDERGIDVVRNNIKNFARTAPLGDARFKIIFLDEADAL 124

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           +   +  L   ME +                        I +      +  P+Q R  + 
Sbjct: 125 TSDAQSALRRTMERYTAT------------------CRFIISCNYSSKIIEPIQSRCAV- 165

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            R      +D++T+ +R  K  G+ +T +    I   +RG  R A   L+     ++   
Sbjct: 166 YRFGPLGPKDIETMARRIEKGEGIKITKDGLDAIIYVARGDMRRAVNALQSASTVSKDIT 225

Query: 238 AK-----------TITREIADAALLRLAID-KMGFDQLDLRY 267
           A+               E+   AL    +D +   D L ++Y
Sbjct: 226 AEAVYETTSTARPKEIEEMLKLALNGQFMDSRNKLDDLLIKY 267


>gi|254875332|ref|ZP_05248042.1| AAA family ATPase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254841331|gb|EET19767.1| AAA family ATPase [Francisella tularensis subsp. tularensis
           MA00-2987]
          Length = 368

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 58/281 (20%), Positives = 102/281 (36%), Gaps = 39/281 (13%)

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHR 116
             G PG+GKT+LA+++A    + F   S  V +   D+  L+T+ +  D  VLF+DEIHR
Sbjct: 1   MCGKPGVGKTSLARIIASSKKLEFFELSA-VDSGVKDIKKLITDNQHLDSFVLFLDEIHR 59

Query: 117 LSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRF 174
            +   ++IL P +E  ++ L+    E P+       +SR  ++       + T  L ++ 
Sbjct: 60  FNKSQQDILLPYVESGKIILIGATTENPTYYLNDALVSRLFILRLKRLSLVATQKLIEK- 118

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
                    + E L              + D     +   + G       LL R+   + 
Sbjct: 119 ------ALSQDEVLAKH--------KFKIDDGLYNAMHNYNEGDCCKILNLLERMFLIST 164

Query: 235 VAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRD 294
                 + +E+ D A+   + D                     G    E +SA     R 
Sbjct: 165 RGDEIYLNKELFDQAVGETSRD-----------------FHREGKEFYEQLSAFHKSVRG 207

Query: 295 AIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
              D    ++         P    R ++ IA + +G   P 
Sbjct: 208 TDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQ 248


>gi|323331879|gb|EGA73291.1| Mgs1p [Saccharomyces cerevisiae AWRI796]
          Length = 360

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 58/296 (19%), Positives = 101/296 (34%), Gaps = 40/296 (13%)

Query: 57  VLFVGPPGLGKTTLAQVV-------ARELGVNFRSTSGPVIAKAG---DLAALLTN---- 102
           ++  GPPG+GKT+LA+++       + E  V  R       A      +L  +       
Sbjct: 1   MILWGPPGVGKTSLARLLTKTATTSSNESNVGSRYFMIETSATKANTQELRGIFEKSKKE 60

Query: 103 ---LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLI 157
               + R VLFIDEIHR + + +++L P +E+  + L+    E PS +     +SR  + 
Sbjct: 61  YQLTKRRTVLFIDEIHRFNKVQQDLLLPHVENGDIILIGATTENPSFQLNNALISRCLIF 120

Query: 158 AATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRG 217
                       +  R    +       + +  I         L ++      +   S G
Sbjct: 121 VLEKLNVNELCIVLSRGIALLNK---CRKQVWNI------ENPLKLSRSILEYVVDLSVG 171

Query: 218 TPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGG 277
             R A  +L  +        A      I D   +       G +                
Sbjct: 172 DTRRALNMLEMIEVSTRERKADEEELSIDDVRDIIKNNSSNGLNTY----------YDPK 221

Query: 278 GPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
           G    +TISA     R   E+    Y+ +       P    R ++ IA + +G+  
Sbjct: 222 GDNHYDTISAFHKSIRGGDENASLYYLARMLQGGEDPLYVARRMIRIASEDIGLRD 277


>gi|57168339|ref|ZP_00367473.1| ATPase, AAA family [Campylobacter coli RM2228]
 gi|57020147|gb|EAL56821.1| ATPase, AAA family [Campylobacter coli RM2228]
          Length = 363

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 63/259 (24%), Positives = 107/259 (41%), Gaps = 33/259 (12%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED---RDV 108
           + L H LF GP G GKTT A+VVA++ G++F    G    K  DL  ++ N ++   + +
Sbjct: 2   QKLPHSLFFGPAGCGKTTFARVVAKDFGLDFYEFDGGNF-KLEDLRKIIENYKNSLYKPL 60

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +FIDEIHRLS   +E+L   ME+++  +++G                         +L++
Sbjct: 61  IFIDEIHRLSKTQQEMLLIPMENYR-CIVIGASTENPYF-----------------VLSS 102

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            ++ R  +         +DL+ +++R  +     + D A   +        R    LL  
Sbjct: 103 GIRSRS-MLFEFKNLGQKDLELLLERVQQKIAFKIEDNAKEFLLK--SFDARAMLNLLE- 158

Query: 229 VRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYL--TMIARNFGGGPVGIETIS 286
              FA V + K IT E      LR  ++  G    D  Y+  + + ++  G  V      
Sbjct: 159 ---FALVLNEKEITLENLKK--LRNGVNSEGVSSKDTHYILASALIKSLRGSDVDAAIYY 213

Query: 287 AGLSEPRDAIEDLIEPYMI 305
                      D I   +I
Sbjct: 214 LARLIDAGESADFIARRLI 232


>gi|212638447|ref|YP_002314967.1| Lon-like ATP-dependent protease [Anoxybacillus flavithermus WK1]
 gi|212559927|gb|ACJ32982.1| Lon-like ATP-dependent protease [Anoxybacillus flavithermus WK1]
          Length = 573

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 64/292 (21%), Positives = 106/292 (36%), Gaps = 56/292 (19%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M++   + R++S  +     +RP+T ++  GQ +    LK     A        HV+  G
Sbjct: 65  MEQLRKM-RSISLTEPLAEKVRPKTFDDIVGQEDGIKALK-----AALCGPNPQHVIIYG 118

Query: 62  PPGLGKTTLAQVVARELGVNFRSTS----------------------GPVIAKAGD---- 95
           PPG+GKT  A++V  E   N  S                         P+I    D    
Sbjct: 119 PPGVGKTAAARLVLEEAKKNPLSPFRKDAVFVELDATTARFDERGIADPLIGSVHDPIYQ 178

Query: 96  -------------LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL----DLMV 138
                            +TN     VLFIDEI  L  I    L   +ED ++        
Sbjct: 179 GAGAMGQAGIPQPKQGAVTNAHGG-VLFIDEIGELHPIQMNKLLKVLEDRKVFFESAYYS 237

Query: 139 GEGPSARSVKINL------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            E P+  +   ++      + F L+ ATTR      P      + +     E E++  IV
Sbjct: 238 EENPNIPNHIHDIFQNGLPADFRLVGATTRTPNEIPPAIRSRCMEVFFRELEQEEIAQIV 297

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           ++ A+   L + ++A  E+AM +R        L            +K + ++
Sbjct: 298 KKAAEKVNLPIEEQAVHELAMYARNGREAVNTLQIAAGIVISEKRSKILRQD 349


>gi|307190745|gb|EFN74647.1| ATPase WRNIP1 [Camponotus floridanus]
          Length = 386

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/260 (16%), Positives = 90/260 (34%), Gaps = 25/260 (9%)

Query: 89  VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARS 146
            + +   +AA       + ++F+DEIHR +   +++  P +E   + L+    E PS   
Sbjct: 24  EVKEVISVAANHAKFAQQTIVFMDEIHRFNKTQQDVFLPHVESGTITLIGATTENPSFSL 83

Query: 147 VKINLSRFT-----LIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK------TIVQRG 195
               LSR        ++    V +L   +    GI    +   ++  +       I  + 
Sbjct: 84  NSALLSRCRVIVLHKLSVANLVSILKRAVISLEGIIHMSDKSTLQSEESTSKGNKIDMQP 143

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255
           +  T   + +     +A    G  RIA   L               ++   +  LL +  
Sbjct: 144 SYNTKFIIDEPTIEWLAETCDGDARIALGGLEMA----------VRSKAPNEEDLLDVGP 193

Query: 256 DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR 315
             +  + ++             G    +TISA     R + E+    ++ +       P 
Sbjct: 194 AIITLNDVEESLKKTHMLYDKKGDQHYDTISALHKSVRASDENASLYWLTRMISGGEDPV 253

Query: 316 --GRLLMPIAWQHLGIDIPH 333
              R L+ +A + +G+  P 
Sbjct: 254 YIARRLVRMASEDIGLADPK 273


>gi|154248843|ref|YP_001409668.1| recombination factor protein RarA [Fervidobacterium nodosum
           Rt17-B1]
 gi|154152779|gb|ABS60011.1| AAA ATPase central domain protein [Fervidobacterium nodosum
           Rt17-B1]
          Length = 378

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 55/288 (19%), Positives = 94/288 (32%), Gaps = 50/288 (17%)

Query: 54  LDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE-----DRDV 108
           L   +  GPPG GKT++  ++ +         +        D+                +
Sbjct: 10  LFSAILAGPPGTGKTSVLNLIKKYTDYEIVQLNAA-FTSVEDIKKWEKYAYNMKGIKNIL 68

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLL 166
           LFIDEIHR +   +++  P +E     L     E P        LSR             
Sbjct: 69  LFIDEIHRFNKKQQDVFLPGVETGIYTLYGTTTESPQHVLNPALLSRCR----------- 117

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
                      +R      +DL+ I+++     G+ VT+     I   S G  R      
Sbjct: 118 ----------VLRFKKLSEKDLRIILEKAISYVGMEVTENVKDMIIRSSNGDARFLINTY 167

Query: 227 RRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETIS 286
             + + A+      I  EI          D++       +Y      ++      I++I 
Sbjct: 168 EILSNIAKTIGKNLIDEEI----FKMYTADELT------KYTDT--EHYNLASAFIKSI- 214

Query: 287 AGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIP 332
                 R +  D    YM +       PR   R L+ +A + +G+  P
Sbjct: 215 ------RGSDPDAALYYMARMINGGEDPRFIARRLVILASEDIGLADP 256


>gi|42528086|ref|NP_973184.1| DNA polymerase III subunits gamma and tau [Treponema denticola ATCC
           35405]
 gi|41819131|gb|AAS13103.1| DNA polymerase III, gamma and tau subunits, putative [Treponema
           denticola ATCC 35405]
          Length = 612

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 70/319 (21%), Positives = 116/319 (36%), Gaps = 38/319 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  E+  GQ    + L+  IEA K         LF GP G GKT+ A+++A+ L    
Sbjct: 11  RPQRFEDLLGQEFVAATLQKSIEAGKIAHAY----LFSGPRGCGKTSSARILAKVLNC-- 64

Query: 83  RSTSGPVIAKAGDLA--ALLTNLEDRDVLFIDEIHRLSII-----VEEILYPAMEDFQLD 135
               GP     G       +T     DV+ ID     S+       +EIL+P   +    
Sbjct: 65  --AEGPRPTPCGHCTSCEEITAGSCLDVIEIDGASNTSVNDVRQIKDEILFPPNSNRYKI 122

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             ++++        I ATT +  +   ++ R           IE
Sbjct: 123 YIIDEVHMLSTSAFNALLKTIEEPPPYVVFIFATTEIHKVPATIKSRCQ-QFNFKLVSIE 181

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
            LK  +   A   G++  DEA   IA  + G+ R A  L  +V  F+       IT E  
Sbjct: 182 ILKQALADAAAELGISADDEALYWIAREATGSVRDAYTLFDQVAAFS----DGHITFEKI 237

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY--- 303
              L        G D ++      +A+N       ++ I  G       + D  + +   
Sbjct: 238 HEKLGLT-----GVDSINKLVSACVAKNGQEALSILDGILQGGISVEQVVSDCADYFRSL 292

Query: 304 -MIQQGFIQRTPRGRLLMP 321
            +++ G  +    G+    
Sbjct: 293 LLVKHGITKEALIGQRADR 311


>gi|329770458|ref|ZP_08261837.1| hypothetical protein HMPREF0433_01601 [Gemella sanguinis M325]
 gi|328836313|gb|EGF85979.1| hypothetical protein HMPREF0433_01601 [Gemella sanguinis M325]
          Length = 566

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 54/234 (23%), Positives = 92/234 (39%), Gaps = 40/234 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     RP+T  +  GQ    S LK  IE        + H  LF GP G GKT++A++ A
Sbjct: 4   ALYRKYRPQTFNDIVGQNHIVSVLKNAIE-----KNQISHAYLFYGPRGTGKTSIAKIFA 58

Query: 76  RELGVN------------FRSTSGPVIAKAGDLAALLTNL---EDRDVLFIDEIHRLSII 120
            E+  N              + S   + +  D+   +  L       V  IDE+H L+  
Sbjct: 59  NEVNKNEVYQKENVDIIEIDAASNNGVDEVRDIKEAIKFLPSEGKYKVYIIDEVHMLTTA 118

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
               L   +E+          P A  + I         ATT +  +   +  R       
Sbjct: 119 AFNALLKTLEE----------PPAHVIFIL--------ATTEIHKIPATILSRCQ-RFEF 159

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
               +E L+  ++  ++   L + ++A  +IA  ++G  R A  +L +V +++E
Sbjct: 160 KNLSVEQLEDRLKYISENERLDIEEDAIKKIATLAKGGLRDAISILDQVSNYSE 213


>gi|15988297|pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
           Pyrococcus Furiosus
 gi|15988298|pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
           Pyrococcus Furiosus
 gi|15988299|pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
           Pyrococcus Furiosus
 gi|15988300|pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
           Pyrococcus Furiosus
 gi|15988301|pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
           Pyrococcus Furiosus
 gi|15988302|pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
           Pyrococcus Furiosus
          Length = 327

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 85/229 (37%), Gaps = 37/229 (16%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   +   RP+ L++  GQ      LK +++       ++ H+LF GPPG+GKTT A  +
Sbjct: 12  EKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTG-----SMPHLLFAGPPGVGKTTAALAL 66

Query: 75  ARE-----LGVNFRSTSGPVIAKAGDLAALLTNLED--------RDVLFIDEIHRLSIIV 121
           ARE        NF   +         +   +               ++F+DE   L+   
Sbjct: 67  ARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDA 126

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           ++ L   ME F                   S    I +      +  P+Q R  I  R  
Sbjct: 127 QQALRRTMEMFS------------------SNVRFILSCNYSSKIIEPIQSRCAI-FRFR 167

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
               ED+   ++  A+  GL +T+E    I   + G  R A  +L+   
Sbjct: 168 PLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAA 216


>gi|304321467|ref|YP_003855110.1| hypothetical protein PB2503_09579 [Parvularcula bermudensis
           HTCC2503]
 gi|303300369|gb|ADM09968.1| hypothetical protein PB2503_09579 [Parvularcula bermudensis
           HTCC2503]
          Length = 402

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 68/302 (22%), Positives = 114/302 (37%), Gaps = 53/302 (17%)

Query: 44  IEAA-KARAEA--LDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALL 100
           I AA + R EA  L  ++  GPPG+GKTTLA+++A  + + F S S  + +   DL  + 
Sbjct: 4   IRAAFRQRIEAGHLPSLILWGPPGVGKTTLARLLAGAVDLEFVSISA-IFSGVADLRKVF 62

Query: 101 TNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLS 152
              E R       +LF+DEIHR +   ++   P ME   + L+    E PS       LS
Sbjct: 63  EAAEGRRQTGQGTLLFVDEIHRFNRAQQDSFLPVMEKGTITLVGATTENPSFALNAALLS 122

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT--GLAVTDEAACE 210
           R  ++                       +  +   L+ ++QR  K     L +T  A  +
Sbjct: 123 RAQVVTL---------------------HRLDEAALEQLLQRAEKDIGAPLPLTPAARAQ 161

Query: 211 IAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTM 270
           + + + G  R    LL    + A ++    +       A+ R                + 
Sbjct: 162 LLVAADGDGRF---LLGMAEEIAGLSLDDVLDEMGLAEAIQRRMPVYDAKQDGHYNLASA 218

Query: 271 IARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
           + ++  G  V      A L      +E   +P  +           R L+ IA + +G  
Sbjct: 219 LQKSVRGSDVD-----AALYYTARMLEAGEDPLFVL----------RRLVVIASEDIGNA 263

Query: 331 IP 332
            P
Sbjct: 264 DP 265


>gi|325972845|ref|YP_004249036.1| DNA polymerase III subunits gamma and tau [Spirochaeta sp. Buddy]
 gi|324028083|gb|ADY14842.1| DNA polymerase III, subunits gamma and tau [Spirochaeta sp. Buddy]
          Length = 543

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 58/251 (23%), Positives = 104/251 (41%), Gaps = 29/251 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  +   GQ    S +K  IE  +         LF GP G+GKT+ A+++AR L    
Sbjct: 11  RPQIFDNLVGQEFVVSTIKHAIEQGRIAHAY----LFSGPRGVGKTSSARILARALNCEQ 66

Query: 83  RSTSGP--VIAKAGDLAALLTNLEDRDVLFIDEIHRLSII-----VEEILYPAMEDFQLD 135
             T+ P  V +   ++    T   + DV+ ID     S+       +E+L+P        
Sbjct: 67  GPTATPCGVCSNCKEI----TQGNNVDVIEIDGASNTSVNDIRQIKDEVLFPPQASKYKI 122

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             ++++   +    I ATT +  +   ++ R          +++
Sbjct: 123 YIIDEVHMLSTSAFNALLKTIEEPPAYIIFIFATTELQKVPATIRSRCQ-QFHFQLIDLD 181

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
            +K+ +   AK   +A  ++A   IA  S G+ R A  L  +V  F++      IT E  
Sbjct: 182 LIKSCLSEAAKEMEVAADEDALFWIAKESTGSMRDAYTLFDQVVSFSQ----GHITMEKI 237

Query: 247 DAALLRLAIDK 257
            + L  + ID+
Sbjct: 238 SSKLGLVGIDQ 248


>gi|313665403|ref|YP_004047274.1| recombination factor protein RarA [Mycoplasma leachii PG50]
 gi|312950049|gb|ADR24645.1| recombination factor protein RarA [Mycoplasma leachii PG50]
          Length = 411

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 62/319 (19%), Positives = 116/319 (36%), Gaps = 51/319 (15%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           LLRP++ +   GQ E      +  +           ++F GP G+GKT+ A  +A +L +
Sbjct: 8   LLRPKSTKNIIGQTEILKPNGLINKMIL--NNYCTSLIFFGPSGVGKTSFAISLANDLKI 65

Query: 81  NFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM- 137
           ++   +     K   L  ++ N   +++ +L IDEIHRL+   ++IL   ME   + +  
Sbjct: 66  DYEIFNAS-YDKKEKLINIIQNALKKEKFILIIDEIHRLNKDKQDILLEYMEKGNIFVFS 124

Query: 138 -VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA 196
              E P         SR  LI            L ++  +         E          
Sbjct: 125 TTTENPFFVVNPALRSRSLLIELK---------LVNKDELISYAKKVINEY--------- 166

Query: 197 KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAID 256
               + ++D+A   +A  S G  R     L  + D         I +      + +    
Sbjct: 167 -QLKIKISDQALDFLAQLSVGDVRTFLNYLE-LIDKLYSNEFIDIEKIKTIITVSKNPTV 224

Query: 257 KMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY---MIQQGFIQRT 313
           +   D  DL+  + + ++  G  V                 D    Y   +I+ G  +  
Sbjct: 225 QDSDDFHDLK--SALQKSIRGSDV-----------------DAALYYFSRLIELGDYE-- 263

Query: 314 PRGRLLMPIAWQHLGIDIP 332
              R ++ I+++ +G+  P
Sbjct: 264 SLMRRMIIISYEDIGLANP 282


>gi|240104119|ref|YP_002960428.1| Replication factor C, small subunit (rfcS) [Thermococcus
           gammatolerans EJ3]
 gi|239911673|gb|ACS34564.1| Replication factor C, small subunit (rfcS) [Thermococcus
           gammatolerans EJ3]
          Length = 333

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 51/229 (22%), Positives = 84/229 (36%), Gaps = 37/229 (16%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   +   RP+ L++  GQ      LK +     A+  ++ H+LF GPPG GKT+ A  +
Sbjct: 15  EKPWVEKYRPQRLDDIVGQEHIVKRLKHY-----AKTGSMPHLLFAGPPGTGKTSAALAL 69

Query: 75  ARE-----LGVNFRSTSGPVIAKAGDLAALLTNLED--------RDVLFIDEIHRLSIIV 121
           ARE        NF   +         +   +               ++F+DE   L+   
Sbjct: 70  ARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDA 129

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           ++ L   ME F                   +    I +      +  P+Q R  I  R  
Sbjct: 130 QQALRRTMEMFS------------------NNVRFILSCNYSSKIIEPIQSRCAI-FRFR 170

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
               ED+   ++  A+  GL +T+E    I   + G  R A  +L+   
Sbjct: 171 PLNDEDIAKRIRYIAEQEGLELTEEGLQAILYVAEGDLRRAINVLQAAA 219


>gi|255609009|ref|XP_002538985.1| werner helicase interacting protein, putative [Ricinus communis]
 gi|223509400|gb|EEF23399.1| werner helicase interacting protein, putative [Ricinus communis]
          Length = 109

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 3/99 (3%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            L              LRP+TL+E  GQ       K    A +  +  L  ++  GPPG+
Sbjct: 3   SLFEPQTPSSVPLAEQLRPKTLDEVVGQTHLLGESKPLRRAFE--SGKLPSMILWGPPGV 60

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE 104
           GKTTLA+++A+     F   S  V++   D+   +   E
Sbjct: 61  GKTTLARLIAQTADAEFVPLSA-VLSGIKDIREAVERAE 98


>gi|328855428|gb|EGG04555.1| hypothetical protein MELLADRAFT_37476 [Melampsora larici-populina
           98AG31]
          Length = 453

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 63/346 (18%), Positives = 115/346 (33%), Gaps = 73/346 (21%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-------FVGPPGLGKTT 69
                +RP TL++     +           A ++   +  +L         GPPG GKTT
Sbjct: 1   PLAERVRPTTLDQCIASPDLIGGG------AGSKPGLIPTLLQTGSSITLWGPPGSGKTT 54

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED-----------------RDVLFID 112
           +A+ +A      F   SG     A    ++  +                    R ++FID
Sbjct: 55  IARCLAAGSNHTFCELSGTDFGAAEWRKSINDHTSRINPWKRSSSSSSAIPLRRLIVFID 114

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMV--GEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           +  RL+   +++L P ++  ++ +++   E PS +     +SR  LI         T  +
Sbjct: 115 DAQRLNKTQQDLLLPHIDSGEVMMILSSTENPSFKFTNRLMSRTRLIELKPHSHANTLSI 174

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
             R        F E E++ + + R A                    G  R+A   L  + 
Sbjct: 175 LKRASELESFKFEEEEEILSRISRAA-------------------DGDARVALNHLDILI 215

Query: 231 DFAEVAHAKTITREIADAALLRL-AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGL 289
            F++ +       E++D    R    D  G    D+                   ISA  
Sbjct: 216 HFSKSSETSIKFDELSDILGKRYVFYDNDGDCHYDM-------------------ISALH 256

Query: 290 SEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
              R +  +    ++ +       P    R L+ +A + +G   P 
Sbjct: 257 KSVRGSDPNAALYWLARMLEGGEDPLYVARRLVRMASEDIGAGNPD 302


>gi|327398442|ref|YP_004339311.1| AAA ATPase central domain-containing protein [Hippea maritima DSM
           10411]
 gi|327181071|gb|AEA33252.1| AAA ATPase central domain protein [Hippea maritima DSM 10411]
          Length = 370

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 51/316 (16%), Positives = 106/316 (33%), Gaps = 63/316 (19%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRST 85
           + +E  GQ       K          +    ++  GPPG+GKTT A+++A++  ++F   
Sbjct: 8   SFDELVGQPHLFGRGKPLY-LFYHSDDKPPSLVLFGPPGVGKTTYAKLLAKKHRLDFFYL 66

Query: 86  SGPVIAKAGDLAALLTNLEDRDV-LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSA 144
           +            L    ++  + + IDEIHR     +++L P +ED  + +MVG     
Sbjct: 67  NATDCPTKTLKDTLKKGSKEAPILVVIDEIHRFDKKQQDVLLPFLEDGSV-VMVGTSTFN 125

Query: 145 RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVT 204
              +                 LT  L+ R  +      YE + L     +      + + 
Sbjct: 126 PYFR-----------------LTKALRSRCFV------YEFKRLNESDLKRLAKRFIEID 162

Query: 205 DEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLD 264
           +    ++ + + G  R    +++ ++                          +   D   
Sbjct: 163 EHLLDKLVLHASGDARKLINMIKILKQ-------------------------QNDIDGNS 197

Query: 265 LRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ-------GFIQRTPRGR 317
           +  L  +   +       + +SA +   R +  D    Y+ +         FI      R
Sbjct: 198 IESLFSLNLGYSNETERYDLVSAFIKSMRGSDVDAALYYLARLLEAGEDVEFI-----AR 252

Query: 318 LLMPIAWQHLGIDIPH 333
            +   A + +G+   H
Sbjct: 253 RMCIFASEDIGLADSH 268


>gi|298675837|ref|YP_003727587.1| replication factor C [Methanohalobium evestigatum Z-7303]
 gi|298288825|gb|ADI74791.1| Replication factor C [Methanohalobium evestigatum Z-7303]
          Length = 318

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 55/243 (22%), Positives = 91/243 (37%), Gaps = 37/243 (15%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           +E+  I   RP  L++  GQ EA   LK +I         L H+LF GPPG+GKT  A  
Sbjct: 2   KEEIWIEKYRPFKLDDIVGQGEAIKRLKSYIS-----TNNLPHLLFSGPPGVGKTAAAVA 56

Query: 74  VARE-----LGVNFRSTSGPVIAKAGDLAALLTNLE--------DRDVLFIDEIHRLSII 120
           +A+E        NF   +         +   + +          D  ++F+DE   L+  
Sbjct: 57  IAKELFGDAWHQNFTELNASDERGIDVVRTKIKDFSKTSPIGGADFKIIFLDEADALTPD 116

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            +  L   ME +                   +    I +      +  P+Q R  +  R 
Sbjct: 117 AQSALRRTMERYT------------------NNCRFILSCNYSSKIIEPIQSRCAV-YRF 157

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
                E ++  V+  A+  GL ++++    I   S+G  R A   L+      +V    T
Sbjct: 158 RSLSYEAVEKRVRYIAEQEGLQISEDGVEAIKYVSQGDMRKAINALQASALIDDVIDKDT 217

Query: 241 ITR 243
           I +
Sbjct: 218 IYK 220


>gi|124485340|ref|YP_001029956.1| replication factor C small subunit [Methanocorpusculum labreanum Z]
 gi|158512813|sp|A2SQT3|RFCS_METLZ RecName: Full=Replication factor C small subunit; Short=RFC small
           subunit; AltName: Full=Clamp loader small subunit
 gi|124362881|gb|ABN06689.1| replication factor C small subunit [Methanocorpusculum labreanum Z]
          Length = 321

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 82/227 (36%), Gaps = 37/227 (16%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
             +  I   RP+ L E  GQ +    L+ ++       +AL H+LF G  G+GKTT A  
Sbjct: 4   SPEIWIEKYRPKNLAEVVGQQDVVERLRSYV-----ATKALPHLLFTGSAGVGKTTCAVA 58

Query: 74  VARE-----LGVNFRSTSGPVIAKAGDLAALLTNLED--------RDVLFIDEIHRLSII 120
           +ARE       +NFR  +         +   +               +LF+DE   L+  
Sbjct: 59  LAREMFGDTWNMNFRELNASDERGIDVVRNQIKQFARTAPLGDATFKILFLDEADALTQD 118

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            +  L   ME++                        I +      + +P+Q R  I  R 
Sbjct: 119 AQAALRRTMENYAET------------------CRFILSCNYSSKIIDPIQSRCAI-YRF 159

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
                E +   + R AK  G+ + + A   I   S G  R A   L+
Sbjct: 160 RPLTDEAISEEIARIAKKEGITIDEGAYVAITYVSLGDMRKAINALQ 206


>gi|325474698|gb|EGC77884.1| DNA polymerase III [Treponema denticola F0402]
          Length = 468

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 70/319 (21%), Positives = 116/319 (36%), Gaps = 38/319 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  E+  GQ    + L+  IEA K         LF GP G GKT+ A+++A+ L    
Sbjct: 11  RPQRFEDLLGQEFVAATLQKSIEAGKIAHAY----LFSGPRGCGKTSSARILAKVLNC-- 64

Query: 83  RSTSGPVIAKAGDLA--ALLTNLEDRDVLFIDEIHRLSII-----VEEILYPAMEDFQLD 135
               GP     G       +T     DV+ ID     S+       +EIL+P   +    
Sbjct: 65  --AEGPRPTPCGHCTSCEEITAGSCLDVIEIDGASNTSVNDVRQIKDEILFPPNSNRYKI 122

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             ++++        I ATT +  +   ++ R           IE
Sbjct: 123 YIIDEVHMLSTSAFNALLKTIEEPPPYVVFIFATTEIHKVPATIKSRCQ-QFNFKLVSIE 181

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
            LK  +   A   G++  DEA   IA  + G+ R A  L  +V  F+       IT E  
Sbjct: 182 ILKQALADAAAELGISADDEALYWIAREATGSVRDAYTLFDQVAAFS----DGHITFEKI 237

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY--- 303
              L        G D ++      +A+N       ++ I  G       + D  + +   
Sbjct: 238 HEKLGLT-----GVDSINKLVSACVAKNGQEALSILDGILQGGISVEQVVSDCADYFRSL 292

Query: 304 -MIQQGFIQRTPRGRLLMP 321
            +++ G  +    G+    
Sbjct: 293 LLVKHGITKEALIGQRADR 311


>gi|34483337|emb|CAE10335.1| conserved hypothetical protein [Wolinella succinogenes]
          Length = 365

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 59/290 (20%), Positives = 107/290 (36%), Gaps = 50/290 (17%)

Query: 51  AEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED---RD 107
             +L H  F GPPG GKT+ A+++A+ L   F   +     K  +L + L   ++   + 
Sbjct: 4   HGSLPHAFFYGPPGTGKTSAAKIIAKRLDRPFALFNATTF-KIEELRSYLKEYKNALLKP 62

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGL 165
           +LFIDE+HRLS   +E+L P ME+ +  ++    E P                       
Sbjct: 63  LLFIDEVHRLSKNQQEVLLPLMENHEAIIIGASTENPYF--------------------A 102

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           +T  ++ R  +         ++L+ +++R  +   + + + A   +   S G  R    L
Sbjct: 103 MTGAIRSRS-MLFEFKPLGKKELEILLERVCENHSILLDNSARDYLLRSSEGDARAMLNL 161

Query: 226 LRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETI 285
           L       E   +    +     +L        G  + D  Y                  
Sbjct: 162 LDCAYSLGESPLSLETLKSFRPVSL------HEGSSEGDTHYNLA--------------- 200

Query: 286 SAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           SA +   R + E+    Y+ +       P    R L+ +A + +G   P 
Sbjct: 201 SAMIKSIRGSDENAAIYYLARLIEGGENPEFIARRLVILASEDIGNANPQ 250


>gi|580975|emb|CAA53291.1| unnamed protein product [Coxiella burnetii]
          Length = 353

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 44/242 (18%), Positives = 78/242 (32%), Gaps = 34/242 (14%)

Query: 96  LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSR 153
           +     +     +LF+DE+H  +   ++   P +E   + L+    E PS +     LSR
Sbjct: 2   VERAERHKGQATILFVDEVHGFNKSQQDAFLPHVEKGTITLIGATTENPSFQLNNALLSR 61

Query: 154 FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAM 213
                  TRV +L    +      +       E+     +RG     L + +     I  
Sbjct: 62  -------TRVYVLKQLTEADLLSIL-------ENALANEERGLGKKALEIPEPLRRRIVQ 107

Query: 214 RSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIAR 273
            + G  R    LL  + DF                AL       +    +D      + R
Sbjct: 108 FADGDARQCLNLLEIIADF----------------ALEENGRFVVDDGLIDKVLTEGLRR 151

Query: 274 NFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP--RGRLLMPIAWQHLGIDI 331
               G    + ISA     R +  D    ++ +       P    R ++ +A + +G   
Sbjct: 152 FDKRGEAFYDQISALHKSVRGSDPDASLYWLSRLLDGGCDPFYVARRVVRMASEDIGNAD 211

Query: 332 PH 333
           P 
Sbjct: 212 PR 213


>gi|294496335|ref|YP_003542828.1| replication factor C small subunit [Methanohalophilus mahii DSM
           5219]
 gi|292667334|gb|ADE37183.1| replication factor C small subunit [Methanohalophilus mahii DSM
           5219]
          Length = 318

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 55/243 (22%), Positives = 89/243 (36%), Gaps = 37/243 (15%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           +E+  I   RP  LE+  GQ +A   L+ +I+        L H+LF GPPG+GKT  A  
Sbjct: 2   KEEIWIEKYRPYRLEDVVGQSDAIERLRSYIK-----TNNLPHLLFSGPPGVGKTATAVS 56

Query: 74  VARE-----LGVNFRSTSGPVIAKAGDLAALLTNL--------EDRDVLFIDEIHRLSII 120
           +ARE        NF   +         +   + N          D  ++F+DE   L+  
Sbjct: 57  IARELFGDDWRENFTELNASDERGIDVVRTKIKNFAKTSPIGGADFKIIFLDEADALTPD 116

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            +  L   ME +                   +    I +      +  P+Q R  +  R 
Sbjct: 117 AQSALRRTMERYT------------------NNCRFILSCNYSSKIIEPIQSRCAV-YRF 157

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
                + +    +  A+  GL + D+    I   + G  R A   ++    F    HA +
Sbjct: 158 RPLSDDAIGKRCRHIAEKEGLDIADDGIEAIKYVAEGDMRKAINAVQAASMFDTSIHADS 217

Query: 241 ITR 243
           I R
Sbjct: 218 IYR 220


>gi|307353132|ref|YP_003894183.1| Replication factor C [Methanoplanus petrolearius DSM 11571]
 gi|307156365|gb|ADN35745.1| Replication factor C [Methanoplanus petrolearius DSM 11571]
          Length = 324

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 90/223 (40%), Gaps = 37/223 (16%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
                RP+TL++  GQ E  + LK +++       +L H+LF GP G+GKTT A  +ARE
Sbjct: 8   WTEKYRPKTLDDVVGQKEIVARLKSYVKTG-----SLPHLLFTGPAGIGKTTSAVALARE 62

Query: 78  -----LGVNFRSTSGPVIAKAGDLAALLTNL--------EDRDVLFIDEIHRLSIIVEEI 124
                  VNFR  +         +   +            +  +LF+DE   L+   +  
Sbjct: 63  FFGENWQVNFRELNASDERGIDVVRNQIKQFARTAPMGGAEFKILFLDEADALTNDAQAA 122

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           L   ME++                        I +      + +P+Q R  +  R    +
Sbjct: 123 LRRTMENYAYT------------------CRFILSCNYSSKIIDPIQSRCAL-YRFRPLD 163

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
            E +   + R AK  GL++T++A   I   ++G  R A   L+
Sbjct: 164 REAVTEELNRIAKTEGLSITEDAMSAIIYVAQGDMRKAINALQ 206


>gi|182418907|ref|ZP_02950164.1| ATPase, AAA family [Clostridium butyricum 5521]
 gi|237668598|ref|ZP_04528582.1| AAA ATPase, central domain protein [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|182377190|gb|EDT74758.1| ATPase, AAA family [Clostridium butyricum 5521]
 gi|237656946|gb|EEP54502.1| AAA ATPase, central domain protein [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 103

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 8/103 (7%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
               L+RP +L++F GQ    S  K      K++   + + +F GPPG GKTTLA ++A 
Sbjct: 3   PLADLMRPSSLDDFVGQKHIMSQGKPLYNLIKSKN--ICNCIFYGPPGTGKTTLANIMAN 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE-----DRDVLFIDEI 114
            +   F   +    A   D+  +  NL+        VL+IDE+
Sbjct: 61  YVDKKFYKLNA-TTASVKDIQDITNNLDSLLSYSGVVLYIDEL 102


>gi|297527205|ref|YP_003669229.1| Replication factor C [Staphylothermus hellenicus DSM 12710]
 gi|297256121|gb|ADI32330.1| Replication factor C [Staphylothermus hellenicus DSM 12710]
          Length = 329

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 59/240 (24%), Positives = 91/240 (37%), Gaps = 37/240 (15%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           SR V  E       RP+TL+E   Q E  S LK F++        + H+LF GPPG GKT
Sbjct: 4   SREVIAELLWAEKYRPKTLDEIVNQEEIVSRLKRFVQ-----ERNMPHLLFAGPPGTGKT 58

Query: 69  TLAQVVAR------------ELGVNFRSTSGPVIAKAGDLAALLTNLE-DRDVLFIDEIH 115
           T A  +A             EL  +       + +K  + A           ++ +DE  
Sbjct: 59  TAAHCLAHDLFGENYRQYMLELNASDERGIDVIRSKVKEFARTRVTANIPFKIVLLDEAD 118

Query: 116 RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
            ++   ++ L   ME +                   +RF LIA       +  P+Q R  
Sbjct: 119 NMTADAQQALRRLMEMYTAT----------------TRFILIA--NYPSKIIEPIQSRCA 160

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
           +  R    + ED+ + ++  A    + V +EA   I   S G  R A  +L+       V
Sbjct: 161 V-FRFAPLKKEDVISRLKWIANQEKVEVDEEALEAIHDLSEGDMRRAINILQAAAALGRV 219


>gi|4098493|gb|AAD00283.1| hypothetical protein [Streptococcus mutans]
          Length = 237

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 55/237 (23%), Positives = 91/237 (38%), Gaps = 24/237 (10%)

Query: 51  AEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVL 109
           A  L  ++  GPPG+GKT++A  +A      FR+ +     K      A         VL
Sbjct: 4   ANRLSSMILYGPPGIGKTSIASAIAGTTKFAFRTFNATTDTKKRLQEIAEEAKFSGGLVL 63

Query: 110 FIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLT 167
            +DEIHRL    ++ L P +E+ Q+ ++    E P         SR  +           
Sbjct: 64  LLDEIHRLDKTKQDFLLPLLENGQIIMIGATTENPFFSVTPAIRSRVQIFEL-------- 115

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
            PL +             +   T  +RG     + + D+A   IA  + G  R A   L 
Sbjct: 116 EPLSNEDIKKAM------QVALTDTERGFD-FEVKLDDDALDFIATATNGDLRSAYNSLD 168

Query: 228 RVRDFAE--VAHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPV 280
                 +     ++ IT +  + +L R    +DK G    D+  L+ + ++  G  V
Sbjct: 169 LAIMSTQPDDNGSRHITLDTVENSLQRSYITMDKDGDAHYDV--LSALQKSIRGSDV 223


>gi|289679161|ref|ZP_06500051.1| recombination factor protein RarA [Pseudomonas syringae pv.
           syringae FF5]
          Length = 110

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/112 (29%), Positives = 55/112 (49%), Gaps = 11/112 (9%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L SR    +    + LR   L+E+ GQ    ++ K   EA +    AL  ++F GPPG+G
Sbjct: 3   LFSREPIAQ-PLAARLRATNLDEYVGQEHVLAHGKPLREALEQ--GALHSMIFWGPPGVG 59

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLT-------NLEDRDVLFI 111
           KTTLA+++A+    +F + S  V+A   ++   +            R +LF+
Sbjct: 60  KTTLAKLLAKVSDAHFETVSA-VLAGVKEIRQAVEVARQQAGQYGKRTILFV 110


>gi|308163434|gb|EFO65771.1| ATPase, AAA family [Giardia lamblia P15]
          Length = 435

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 67/332 (20%), Positives = 116/332 (34%), Gaps = 51/332 (15%)

Query: 22  LRPRTLEEFTGQVEAC----SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           LRP T++E  G           +    E ++     L  ++  GPPG GKT+ A++ A+ 
Sbjct: 27  LRPTTIDEIVGNHHILSLTDGVIGRIYEQSRT-THILQSIIITGPPGTGKTSFARLYAKS 85

Query: 78  LGVNF-----RSTSGPVIAKAGDLAALLTNLED-----RDVLFIDEIHRLSIIVEEILYP 127
              ++     +S    V      +  + T+  +     R  LF+DE HR +   ++ L  
Sbjct: 86  FDPSYKLIEFKSGQATVTELNKIIERISTDRANGLTSARVCLFVDEAHRCTKPQQDRLLS 145

Query: 128 AMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE- 184
            +E+  L L+      P    ++   SR  L++         N L  +  + I +     
Sbjct: 146 VVEEGILTLILATTVSPHMAIIEGLRSRCLLLSF--------NALTSKDILQICVRGLNS 197

Query: 185 -IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            ++ L T V        + V   A  +I + +RG  R A  LL        +        
Sbjct: 198 MLDKLDTSVP-----LDICVEPSAIAKIVVAARGDGRKALSLLELSVTGGRITEQNV--- 249

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
                ALL       G    D    T++   F    V  E +S  +   R +       Y
Sbjct: 250 -----ALLLS-----GGVHGD----TLMHCTFNQEQVKYEGVSGMIKAIRASDPQGAVFY 295

Query: 304 MIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           +         P    R L+  A + +G+    
Sbjct: 296 LALLLRTAVDPLYIARRLVISASEDIGLADSQ 327


>gi|110590957|pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
 gi|110590958|pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
 gi|110590959|pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
 gi|110590960|pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
          Length = 226

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 56/241 (23%), Positives = 88/241 (36%), Gaps = 37/241 (15%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +  +   RPRTL+E  GQ E    LK ++E      + + H+LF GPPG GKT  A  +A
Sbjct: 5   EIWVEKYRPRTLDEVVGQDEVIQRLKGYVE-----RKNIPHLLFSGPPGTGKTATAIALA 59

Query: 76  R------------ELGVNFRSTSGPVIAKAGDLAALLT-NLEDRDVLFIDEIHRLSIIVE 122
           R            E+  +       V  K  + A           ++F+DE   L+   +
Sbjct: 60  RDLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQ 119

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             L   ME +                        I +   V  +  P+Q R  +  R   
Sbjct: 120 AALRRTMEMYS------------------KSCRFILSCNYVSRIIEPIQSRCAV-FRFKP 160

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
              E +K  +    +  G+ +T++    +   S G  R A   L+      EV  A TI 
Sbjct: 161 VPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIGEVVDADTIY 220

Query: 243 R 243
           +
Sbjct: 221 Q 221


>gi|308189843|ref|YP_003922774.1| hypothetical protein MFE_02830 [Mycoplasma fermentans JER]
 gi|307624585|gb|ADN68890.1| hypothetical protein MFE_02830 [Mycoplasma fermentans JER]
          Length = 235

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/218 (19%), Positives = 97/218 (44%), Gaps = 7/218 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           L P   +EF GQ +   +L + ++ +K     + +++FV P G GK +LA ++++    +
Sbjct: 4   LTPINFKEFRGQKDLIKSLIILLQESKK----IPNMIFVAPKGYGKYSLANIISQFKDRS 59

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
               +   I    +L  +L NL++  +LFI++I++L   ++++L+       LD +    
Sbjct: 60  LHPITSNNIIDEFELLNILANLKNNAILFIEDINKLKPELKKLLFDIYNSINLDKVEKIC 119

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            S +  ++ +  F++I        + +   + F I   L  Y + +L  I+      T  
Sbjct: 120 YSNK--RLKIKNFSIIGTINSSNQIDSSKWEGFKI-FNLKKYSLNNLNQIINYNRIKTNF 176

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
            +++     I       P I   +  +  D+  + + +
Sbjct: 177 KLSNSLVEYILNNCNNNPGILNEVYLKAIDYFAIKNKE 214


>gi|218884001|ref|YP_002428383.1| replication factor C large subunit [Desulfurococcus kamchatkensis
           1221n]
 gi|218765617|gb|ACL11016.1| replication factor C large subunit [Desulfurococcus kamchatkensis
           1221n]
          Length = 426

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 87/229 (37%), Gaps = 23/229 (10%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
            +    I   RP+TL+E   Q EA S L  ++ + +    +    L  GPPG GKT+L +
Sbjct: 3   QERVPWIIKYRPKTLDEVVNQDEAKSKLLEWLSSWEKGKPSKKAALLHGPPGCGKTSLVE 62

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEIL 125
            +AR  G      +     +  D+  ++            R ++ +DE+  + +  +   
Sbjct: 63  ALARSKGYQLLEMNASDARRKEDIERIVKLASRSGALTGSRKIILLDEVDGMDVRADAG- 121

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
                        G       +K++ +   +  A      +  PL++   +         
Sbjct: 122 -------------GVEALVEVIKVSANPIIM-TANNPYSQMLRPLRELSEMIAFKRL-TP 166

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
            D+ T+++R      L   D+A  EIA RS G  R A   L  +   +E
Sbjct: 167 RDVVTVLKRICSAEKLVCEDQALDEIAKRSEGDLRSAINDLEAMAGASE 215


>gi|253744345|gb|EET00566.1| ATPase, AAA family [Giardia intestinalis ATCC 50581]
          Length = 415

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 67/338 (19%), Positives = 122/338 (36%), Gaps = 59/338 (17%)

Query: 20  SLLRPRTLEEFTGQVEAC----SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           + LRP T++E  G           +    E ++A +  L  ++  GPPG GKT+LA++ A
Sbjct: 5   ARLRPNTIDEIVGNRHILSLTDGIVGRIYEQSQA-SHILQSIIITGPPGTGKTSLARLYA 63

Query: 76  RELGVNFR-----STSGPVIAKAGDLAALLTNLEDRDV-----LFIDEIHRLSIIVEEIL 125
           +    +++     S    V      +  +  +     +     LF+DE HR +   ++ L
Sbjct: 64  KSFDPSYKLIEFKSGQATVAELNKVIERVAADRAGGLINAHVCLFVDEAHRCTKTQQDRL 123

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             A+ED  + L++             S +T I          + L+ R  + +  N   +
Sbjct: 124 LSAVEDGTVTLILATTA---------SPYTAI---------IDGLRSRC-LLLTFNALTL 164

Query: 186 EDLKTIVQRGAKL----------TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
           E+   I  RG                 V   A  +IA+ +RG  R A  LL        +
Sbjct: 165 EETLQICVRGLNSMLDKLDTSVPLDTCVEPIAIAKIAIAARGDGRKALSLLELSVTTGRI 224

Query: 236 AHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDA 295
                +      A +          DQ  ++Y         G    I+ I A  S+P+ A
Sbjct: 225 TEQSVLLVLSGSAHVDTAMH--CTLDQEHVKY-----EGISG---MIKAIRA--SDPQGA 272

Query: 296 IEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +       +++   +      R L+  A + +G+    
Sbjct: 273 V--FYLALLLRAS-VDPLYIARRLIVSASEDIGLADSQ 307


>gi|241889703|ref|ZP_04777001.1| DNA polymerase III subunit gamma/tau [Gemella haemolysans ATCC
           10379]
 gi|241863325|gb|EER67709.1| DNA polymerase III subunit gamma/tau [Gemella haemolysans ATCC
           10379]
          Length = 569

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 55/234 (23%), Positives = 89/234 (38%), Gaps = 40/234 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     RP+T  +  GQ    S LK  I+      + + H  LF G  G GKT++A++ A
Sbjct: 4   ALYRKYRPQTFNDIVGQNHIVSVLKNAID-----KDQISHAYLFYGSRGTGKTSIAKIFA 58

Query: 76  RELGVN------------FRSTSGPVIAKAGDLAALLTNL---EDRDVLFIDEIHRLSII 120
            E+  N              + S   + +  D+   +  L       V  IDE+H L+  
Sbjct: 59  NEVNGNEIYQKENVDIIEIDAASNNGVDEVRDIKEAIKFLPTEGKYKVYIIDEVHMLTTA 118

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
               L   +E+          P A  + I         ATT +  +   +  R       
Sbjct: 119 AFNALLKTLEE----------PPAHVIFIL--------ATTEIHKIPATILSRCQ-RFEF 159

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
                E L   ++  AK   L + + A  +IA  ++G  R A  +L +V ++AE
Sbjct: 160 KNLSQEQLIDRLKYIAKEENLVIEEAAIEKIATLAKGGLRDAISILDQVSNYAE 213


>gi|83746914|ref|ZP_00943961.1| ATPase, AAA family [Ralstonia solanacearum UW551]
 gi|83726499|gb|EAP73630.1| ATPase, AAA family [Ralstonia solanacearum UW551]
          Length = 389

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 70/222 (31%), Gaps = 39/222 (17%)

Query: 117 LSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRF 174
            +   ++   P +E      +    E PS       LSR  +    +             
Sbjct: 58  FNKSQQDAFLPHVESGLFTFIGATTENPSFEVNGALLSRAAVYVLKS------------- 104

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTG-LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                      ++LK + +R  +  G L     A   +   + G  R     L  V   A
Sbjct: 105 --------LSDDELKQLAERARQELGGLEWVPAALDAVVASADGDGRKLLNNLEIVTRAA 156

Query: 234 EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
             A A+  T    D ALL  A+ +             + R   GG    + ISA     R
Sbjct: 157 R-AQAEGDTVPTVDEALLASALSEN------------LRRFDKGGDAFYDQISALHKSVR 203

Query: 294 DAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +  D    +  +       PR   R ++ +AW+ +G+  P 
Sbjct: 204 GSDPDAALYWFCRMLDGGADPRYLARRIVRMAWEDIGLADPR 245


>gi|319776840|ref|YP_004136491.1| holliday junction ATP-dependent DNA helicase ruvb [Mycoplasma
           fermentans M64]
 gi|319776967|ref|YP_004136618.1| holliday junction ATP-dependent DNA helicase ruvb [Mycoplasma
           fermentans M64]
 gi|319777201|ref|YP_004136852.1| holliday junction ATP-dependent DNA helicase ruvb [Mycoplasma
           fermentans M64]
 gi|238809748|dbj|BAH69538.1| hypothetical protein [Mycoplasma fermentans PG18]
 gi|318037915|gb|ADV34114.1| Holliday junction ATP-dependent DNA helicase RuvB [Mycoplasma
           fermentans M64]
 gi|318038042|gb|ADV34241.1| Holliday junction ATP-dependent DNA helicase ruvB [Mycoplasma
           fermentans M64]
 gi|318038276|gb|ADV34475.1| Holliday junction ATP-dependent DNA helicase RuvB [Mycoplasma
           fermentans M64]
          Length = 235

 Score = 87.1 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/218 (20%), Positives = 96/218 (44%), Gaps = 7/218 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           L P   +EF GQ +   +L + ++ +K     + +++FV P G GK +LA ++++    +
Sbjct: 4   LTPINFKEFRGQKDLIKSLIILLQESKK----IPNMIFVAPKGYGKYSLANIISQFKDRS 59

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            +  +   I    +L  +L NL++  +LFI++I++L   ++++L+       LD +    
Sbjct: 60  LQPITSNNIVDEFELLNILANLKNNAILFIEDINKLKPELKKLLFDIYNSINLDKVEKIC 119

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
            S +  KI    F++I        + +   + F I   L  Y + +L  I+      T  
Sbjct: 120 YSNKRFKI--KNFSIIGTINSSNQIDSSKWEGFKI-FNLKKYSLNNLNQIINYNRLKTNF 176

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
            + +     I       P I   +  +  D+  + + +
Sbjct: 177 KLGNSLVEYILNNCNNNPGILNEVYLKAIDYFAIKNKE 214


>gi|212224565|ref|YP_002307801.1| ATPase involved in DNA replication [Thermococcus onnurineus NA1]
 gi|212009522|gb|ACJ16904.1| ATPase involved in DNA replication [Thermococcus onnurineus NA1]
          Length = 326

 Score = 87.1 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 84/229 (36%), Gaps = 37/229 (16%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   +   RP+ LE+  GQ      LK +++       ++ H+LF GPPG+GKTT A  +
Sbjct: 12  EKPWVEKYRPQRLEDIVGQEHIVKRLKHYVKTG-----SMPHLLFAGPPGVGKTTAALAL 66

Query: 75  ARE-----LGVNFRSTSGPVIAKAGDLAALLTNLED--------RDVLFIDEIHRLSIIV 121
           ARE        NF   +         +   +               ++F+DE   L+   
Sbjct: 67  ARELFGEHWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDA 126

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           ++ L   ME F                   +    I +      +  P+Q R  I  R  
Sbjct: 127 QQALRRTMEMFS------------------TNVRFILSCNYSSKIIEPIQSRCAI-FRFR 167

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
                D+   ++  A+  GL +T++    +   + G  R A  +L+   
Sbjct: 168 PLNDNDIAKRIKYIAENEGLELTEDGLQALLYVAEGDLRRAINVLQAAA 216


>gi|126466118|ref|YP_001041227.1| replication factor C small subunit [Staphylothermus marinus F1]
 gi|158513390|sp|A3DNV9|RFCS_STAMF RecName: Full=Replication factor C small subunit; Short=RFC small
           subunit; AltName: Full=Clamp loader small subunit
 gi|126014941|gb|ABN70319.1| replication factor C small subunit [Staphylothermus marinus F1]
          Length = 329

 Score = 87.1 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 58/240 (24%), Positives = 93/240 (38%), Gaps = 37/240 (15%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           SR V  E       RP+TL+E   Q E  S LK F++        + H+LF GPPG GKT
Sbjct: 4   SREVIAELLWAEKYRPKTLDEIVDQEEIVSRLKQFVK-----ERNMPHLLFAGPPGTGKT 58

Query: 69  TLAQVVAR------------ELGVNFRSTSGPVIAKAGDLAALLTNLE-DRDVLFIDEIH 115
           T A  +A             EL  +       + +K  + A           ++ +DE  
Sbjct: 59  TAAHCLAHDLFGENYRQYMLELNASDERGIDVIRSKVKEFARTRVAANIPFKIVLLDEAD 118

Query: 116 RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
            ++   ++ L   ME +                   +RF LIA       +  P+Q R  
Sbjct: 119 NMTADAQQALRRLMEMYTAT----------------TRFILIA--NYPSKIIEPIQSRCA 160

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
           +  R    + ED+ + ++  A+   + + +EA   I   S G  R A  +L+      +V
Sbjct: 161 V-FRFAPLKKEDVISRLKWIAEQEKVEIDEEALEAIHDLSEGDMRRAINILQAAAALGKV 219


>gi|315230688|ref|YP_004071124.1| replication factor C small subunit [Thermococcus barophilus MP]
 gi|315183716|gb|ADT83901.1| replication factor C small subunit [Thermococcus barophilus MP]
          Length = 326

 Score = 87.1 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 85/229 (37%), Gaps = 37/229 (16%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   +   RP+ L++  GQ      LK +++       ++ H+LF GPPG+GKTT A  +
Sbjct: 12  EKPWVEKYRPQRLDDIVGQDHIVKRLKHYVKTG-----SMPHLLFAGPPGVGKTTAALCL 66

Query: 75  ARE-----LGVNFRSTSGPVIAKAGDLAALLTNLED--------RDVLFIDEIHRLSIIV 121
            RE        NF   +         +   +               ++F+DE   L+   
Sbjct: 67  TRELFGEHWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDA 126

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           ++ L   ME F                   +    I +      +  P+Q R  I  R  
Sbjct: 127 QQALRRMMEMFS------------------NNVRFILSCNYSSKIIEPIQSRCAI-FRFR 167

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
             + ED+   ++  A+  GL +T+E    +   + G  R A  +L+   
Sbjct: 168 PLKDEDIAKRIRFIAENEGLELTEEGLQALLYIAEGDLRRAINVLQAAA 216


>gi|261418333|ref|YP_003252015.1| ATP-dependent protease LonB [Geobacillus sp. Y412MC61]
 gi|297529185|ref|YP_003670460.1| ATP-dependent protease LonB [Geobacillus sp. C56-T3]
 gi|319767708|ref|YP_004133209.1| ATP-dependent protease LonB [Geobacillus sp. Y412MC52]
 gi|261374790|gb|ACX77533.1| ATP-dependent protease LonB [Geobacillus sp. Y412MC61]
 gi|297252437|gb|ADI25883.1| ATP-dependent protease LonB [Geobacillus sp. C56-T3]
 gi|317112574|gb|ADU95066.1| ATP-dependent protease LonB [Geobacillus sp. Y412MC52]
          Length = 557

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 62/303 (20%), Positives = 108/303 (35%), Gaps = 57/303 (18%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M++   L R++S  +     +RP++ ++  GQ +    LK     A        HV+  G
Sbjct: 44  MEQLRKL-RSISLTEPLAEKVRPKSFDDIVGQEDGIKALK-----AALCGPNPQHVIIYG 97

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSG----------------------PVIAKAGD---- 95
           PPG+GKT  A++V  E   N  S                         P+I    D    
Sbjct: 98  PPGVGKTAAARLVLEEAKKNPLSPFKKNAVFVELDATTARFDERGIADPLIGSVHDPIYQ 157

Query: 96  -------------LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL----DLMV 138
                            +TN     VLFIDEI  L  I    L   +ED ++        
Sbjct: 158 GAGAMGQAGIPQPKQGAVTNAHGG-VLFIDEIGELHPIQMNKLLKVLEDRKVFFESAYYS 216

Query: 139 GEGPSARSVKINL------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            E P   S   ++      + F L+ ATTR      P      + +     + +++  I 
Sbjct: 217 KENPQIPSHIHDIFQNGLPADFRLVGATTRTPNEIPPAIRSRCLEVFFRELDQDEIALIA 276

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           ++ A+   L V++     +A  +R   R A  +++     A   + + I  +  +  +  
Sbjct: 277 KKAAEKIRLNVSESGIRLLAAYARN-GREAVNMMQIAAGLAITENRENILDKDIEWVIQS 335

Query: 253 LAI 255
             +
Sbjct: 336 SQM 338


>gi|138896217|ref|YP_001126670.1| ATP-dependent Lon protease [Geobacillus thermodenitrificans NG80-2]
 gi|196250173|ref|ZP_03148867.1| ATP-dependent protease LonB [Geobacillus sp. G11MC16]
 gi|134267730|gb|ABO67925.1| ATP-dependent Lon protease [Geobacillus thermodenitrificans NG80-2]
 gi|196210357|gb|EDY05122.1| ATP-dependent protease LonB [Geobacillus sp. G11MC16]
          Length = 558

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 62/296 (20%), Positives = 106/296 (35%), Gaps = 57/296 (19%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M++   L R++S  +     +RP++ ++  GQ +    LK     A        HV+  G
Sbjct: 44  MEQLRKL-RSISLTEPLAEKVRPKSFDDIVGQEDGIKALK-----AALCGPNPQHVIIYG 97

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSG----------------------PVIAKAGD---- 95
           PPG+GKT  A++V  E   N  S                         P+I    D    
Sbjct: 98  PPGVGKTAAARLVLEEAKKNPLSPFKKNAVFVELDATTARFDERGIADPLIGSVHDPIYQ 157

Query: 96  -------------LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL----DLMV 138
                            +TN     VLFIDEI  L  I    L   +ED ++        
Sbjct: 158 GAGAMGQAGIPQPKQGAVTNAHGG-VLFIDEIGELHPIQMNKLLKVLEDRKVFFESAYYS 216

Query: 139 GEGPSARSVKINL------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            E P   S   ++      + F L+ ATTR      P      + +     + +++  I 
Sbjct: 217 KENPQIPSHIHDIFQNGLPADFRLVGATTRTPNEIPPAIRSRCLEVFFRELDQDEIALIA 276

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           ++ A+   L V++     +A  +R   R A  +++     A   + + I  +  + 
Sbjct: 277 KKAAEKIRLNVSESGIRLLAAYARN-GREAVNMMQIAAGLAITENREKILDKDIEW 331


>gi|114567169|ref|YP_754323.1| endopeptidase La [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114338104|gb|ABI68952.1| Endopeptidase La [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 566

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 70/339 (20%), Positives = 112/339 (33%), Gaps = 67/339 (19%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           RN+   +   SL RP  +++  GQ EA S L+  +           HV+  GPPG+GKT 
Sbjct: 56  RNIKLSEPLSSLTRPAQMDDIIGQKEAVSILRSAL-----CGPNPQHVIIFGPPGVGKTA 110

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRD---------------------- 107
            A++V  E   N  S  G   A   ++ A ++  ++R+                      
Sbjct: 111 AARLVLEEAKKNPLSPFGK-DANFVEVDATISRFDERNIADPLIGSVHDPIYQGAGSMGS 169

Query: 108 -----------------VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPS------- 143
                            +LFIDEI  L  +    L   +ED ++ L              
Sbjct: 170 AGIPQPKPGACTRAHGGILFIDEIGELHSLQMNKLLKVLEDRKVMLESAYYTEYNRTIPV 229

Query: 144 --ARSVKINLS-RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
                    L   F L+ ATTR     +P      + I  N    ED++ I    AK   
Sbjct: 230 YIHEIFNHGLPADFRLVGATTRSPDELSPALRSRCLEIFFNPLTKEDIERITLNAAKKIN 289

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGF 260
             + + AA E   R     R A  +++     A+V     I+  I +  L          
Sbjct: 290 FPL-EPAALEEISRYANNGREAVNMVQLSAGIAQVEKQNKISLSIVEKVLNNGRFSPRRE 348

Query: 261 DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
                       +      VG+    A +      + ++
Sbjct: 349 -----------IKIKEEAMVGVVNGLAVIGANMGTLLEV 376


>gi|56421186|ref|YP_148504.1| ATP-dependent protease [Geobacillus kaustophilus HTA426]
 gi|56381028|dbj|BAD76936.1| ATP-dependent protease [Geobacillus kaustophilus HTA426]
          Length = 557

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 62/303 (20%), Positives = 108/303 (35%), Gaps = 57/303 (18%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M++   L R++S  +     +RP++ ++  GQ +    LK     A        HV+  G
Sbjct: 44  MEQLRKL-RSISLTEPLAEKVRPKSFDDIVGQEDGIKALK-----AALCGPNPQHVIIYG 97

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSG----------------------PVIAKAGD---- 95
           PPG+GKT  A++V  E   N  S                         P+I    D    
Sbjct: 98  PPGVGKTAAARLVLEEAKKNPLSPFKKNAVFVELDATTARFDERGIADPLIGSVHDPIYQ 157

Query: 96  -------------LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL----DLMV 138
                            +TN     VLFIDEI  L  I    L   +ED ++        
Sbjct: 158 GAGAMGQAGIPQPKQGAVTNAHGG-VLFIDEIGELHPIQMNKLLKVLEDRKVFFESAYYS 216

Query: 139 GEGPSARSVKINL------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            E P   S   ++      + F L+ ATTR      P      + +     + +++  I 
Sbjct: 217 KENPQIPSHIHDIFQNGLPADFRLVGATTRTPNEIPPAIRSRCLEVFFRELDQDEIALIA 276

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           ++ A+   L V++     +A  +R   R A  +++     A   + + I  +  +  +  
Sbjct: 277 KKAAEKIRLNVSESGIRLLAAYARN-GREAVNMMQIAAGLAITENRENILDKDIEWVIQS 335

Query: 253 LAI 255
             +
Sbjct: 336 SQM 338


>gi|47458682|gb|AAT28003.1| ATPase [Mycoplasma mobile 163K]
          Length = 372

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 59/285 (20%), Positives = 105/285 (36%), Gaps = 50/285 (17%)

Query: 54  LDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDE 113
           +   +F G  G+GKTT A V+A+E   ++   +  + +K      LL  L    +L IDE
Sbjct: 1   MSSFIFYGESGIGKTTAATVIAKEKQESYDVFNPTIHSKK----ELLEKLAINKILIIDE 56

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           +HRL+   +EIL   +ED ++ L     E P  + +    SR  ++              
Sbjct: 57  LHRLNKDKQEILLSYLEDDKIILYATTTENPYFKIIPSLRSRLKIL-------------- 102

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            RF        +  + LK I+++      + + D+    I   S G  R A   L  +  
Sbjct: 103 -RFNKLSETEIF--QGLKNIIEKY--KLKIKINDDLLLSIVKFSAGDFRNAINNLDLIET 157

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
                +    + +    ++     DK      D                   T+SA    
Sbjct: 158 IYPNTNVDFESIKKIFPSMN-FYTDKDADKHYD-------------------TLSAFHKS 197

Query: 292 PRDAIEDLIEPY---MIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            R +  D    Y   + + G I      R L+ +A++ + +  P+
Sbjct: 198 LRGSDPDAALYYGMLLAKAGDIDALL--RRLIMVAYEDIALANPN 240


>gi|329767046|ref|ZP_08258574.1| hypothetical protein HMPREF0428_00271 [Gemella haemolysans M341]
 gi|328837771|gb|EGF87396.1| hypothetical protein HMPREF0428_00271 [Gemella haemolysans M341]
          Length = 571

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 53/234 (22%), Positives = 89/234 (38%), Gaps = 40/234 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     RP+T  +  GQ    S LK  I+      + + H  LF G  G GKT++A++ A
Sbjct: 4   ALYRKYRPQTFADIVGQNHIVSVLKNAID-----KDQISHAYLFYGSRGTGKTSIAKIFA 58

Query: 76  RELGVN------------FRSTSGPVIAKAGDLAALLTNL---EDRDVLFIDEIHRLSII 120
            E+  N              + S   + +  D+   +  L       V  IDE+H L+  
Sbjct: 59  NEVNKNEEYQKENVDIIEIDAASNNGVDEVRDIKEAIKFLPTEGKYKVYIIDEVHMLTTA 118

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
               L   +E+          P A  + I         ATT +  +   +  R       
Sbjct: 119 AFNALLKTLEE----------PPAHVIFIL--------ATTEIHKIPATILSRCQ-RFEF 159

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
                E L   ++  ++   L + D A  +IA  ++G  R A  +L +V +++E
Sbjct: 160 KNLSQEQLIDRLKYISEKESLVIEDAAIEKIATLAKGGLRDAISILDQVSNYSE 213


>gi|289808090|ref|ZP_06538719.1| Holliday junction DNA helicase RuvB [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 65

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 42/62 (67%)

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
            AL  L +D  GFD +D + L  +   F GGPVG++ ++A + E R+ IED++EPY+IQQ
Sbjct: 4   QALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQ 63

Query: 308 GF 309
           GF
Sbjct: 64  GF 65


>gi|313124845|ref|YP_004035109.1| replication factor c small subunit [Halogeometricum borinquense DSM
           11551]
 gi|312291210|gb|ADQ65670.1| replication factor C small subunit [Halogeometricum borinquense DSM
           11551]
          Length = 328

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 51/250 (20%), Positives = 93/250 (37%), Gaps = 36/250 (14%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M          +  +  I   RP+TL++  GQ +    L+ +IE      + L H+LF G
Sbjct: 1   MSEAADAEEAATGREIWIEKYRPQTLDDVYGQEDIVERLRSYIE-----QDDLPHLLFAG 55

Query: 62  PPGLGKTTLAQVVARE-----LGVNFRSTSGPVIAKAGDLAALLTNLEDRD-------VL 109
           P G+GKTT A  +AR         NF   +         +   + N            ++
Sbjct: 56  PAGVGKTTSATAIARAIYGDDWRGNFLELNASDERGIDVVRDRIKNFARSSFGGFDYRII 115

Query: 110 FIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           F+DE   L+   +  L   ME F                 + +RF  I +      + +P
Sbjct: 116 FLDEADSLTSDAQSALRRTMEQFS----------------DNTRF--ILSCNYSSKIIDP 157

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           +Q R  +  R +    + ++  V+  A+   + +T++    +   + G  R A   L+  
Sbjct: 158 IQSRCAV-FRFSPLGDDAVREQVKDIAETEEIELTEDGLDALVYAAGGDMRRAINSLQAA 216

Query: 230 RDFAEVAHAK 239
               E+   +
Sbjct: 217 ATTGEIVDEE 226


>gi|288560386|ref|YP_003423872.1| replication factor C small subunit RfcS [Methanobrevibacter
           ruminantium M1]
 gi|288543096|gb|ADC46980.1| replication factor C small subunit RfcS [Methanobrevibacter
           ruminantium M1]
          Length = 314

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 45/290 (15%), Positives = 99/290 (34%), Gaps = 40/290 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+TL++  GQ     +LK +++       ++ +++F GP G+GKTT A  + +
Sbjct: 4   PWVEKYRPQTLDDIVGQKHIVESLKKYVDQG-----SMPNLMFTGPAGVGKTTSALALVK 58

Query: 77  E-----LGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEI 124
                    NF   +         +   + N            ++F+DE+  ++   +  
Sbjct: 59  AILGDYWRQNFLELNASDARGIETVRTNIKNFCRLKPVGAPFRIIFLDEVDNMTKDAQHA 118

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           L   ME +                      + I +      + +P+Q R  I  R    +
Sbjct: 119 LRREMEMYTKT------------------CSFILSCNYSSKIIDPIQSRCAI-FRFAPIK 159

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA---KTI 241
            E++   ++  A+  G    ++A   I +   G  R +  +L+       +      + +
Sbjct: 160 AEEIADRLKYIAEAEGCEYEEKAIETIVLFGEGDMRKSVNMLQSAASTGNITEDHVYEVV 219

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLT-MIARNFGGGPVGIETISAGLS 290
           T+         +     G        L  ++      G   +  I   ++
Sbjct: 220 TKARPQEIKEMVDAALRGKFMESRNILRDVMILQGTSGEDMVNQIYQDVA 269


>gi|11499642|ref|NP_070884.1| replication factor C small subunit [Archaeoglobus fulgidus DSM
           4304]
 gi|42559325|sp|O28219|RFCS_ARCFU RecName: Full=Replication factor C small subunit; Short=RFC small
           subunit; AltName: Full=Clamp loader small subunit;
           AltName: Full=afRFC small subunit; Short=afRFCsm
 gi|110590966|pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
 gi|110590967|pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
 gi|110590968|pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
 gi|110590969|pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
 gi|110590970|pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
 gi|110590971|pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
 gi|110590972|pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
 gi|110590973|pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
 gi|110590974|pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
 gi|2648471|gb|AAB89191.1| activator 1, replication factor C, 35 KD subunit [Archaeoglobus
           fulgidus DSM 4304]
          Length = 319

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 56/241 (23%), Positives = 88/241 (36%), Gaps = 37/241 (15%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +  +   RPRTL+E  GQ E    LK ++E      + + H+LF GPPG GKT  A  +A
Sbjct: 5   EIWVEKYRPRTLDEVVGQDEVIQRLKGYVE-----RKNIPHLLFSGPPGTGKTATAIALA 59

Query: 76  R------------ELGVNFRSTSGPVIAKAGDLAALLT-NLEDRDVLFIDEIHRLSIIVE 122
           R            E+  +       V  K  + A           ++F+DE   L+   +
Sbjct: 60  RDLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQ 119

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             L   ME +                        I +   V  +  P+Q R  +  R   
Sbjct: 120 AALRRTMEMYS------------------KSCRFILSCNYVSRIIEPIQSRCAV-FRFKP 160

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
              E +K  +    +  G+ +T++    +   S G  R A   L+      EV  A TI 
Sbjct: 161 VPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIGEVVDADTIY 220

Query: 243 R 243
           +
Sbjct: 221 Q 221


>gi|257458486|ref|ZP_05623623.1| DNA polymerase III, subunits gamma and tau [Treponema vincentii
           ATCC 35580]
 gi|257444083|gb|EEV19189.1| DNA polymerase III, subunits gamma and tau [Treponema vincentii
           ATCC 35580]
          Length = 416

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 66/308 (21%), Positives = 116/308 (37%), Gaps = 35/308 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  E+  GQ    + L+  IEA K         LF GP G GKT+ A+++A+ L    
Sbjct: 11  RPQRFEDLLGQDFVAATLQKSIEAGKIAHAY----LFSGPRGCGKTSSARILAKALNCET 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII-----VEEILYPAMEDFQLDLM 137
            + + P           +T     DV+ ID     S+       +EIL+P         +
Sbjct: 67  GTVATP--CGVCTSCCEITAGSSIDVIEIDGASNTSVNDVRQIKDEILFPPNTSRYKIYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT +  +   ++ R          ++E L
Sbjct: 125 IDEVHMLSTSAFNALLKTIEEPPPYVIFIFATTELHKVPATIKSRCQ-HFNFKLVDVEVL 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           K  +   A    +   DEA   IA  + G+ R    L  +V  F+       IT E    
Sbjct: 184 KQALAEAAAELHIEADDEALYWIAREATGSVRDCYTLFDQVAAFS----DGHITFEKIQR 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTM-IARNFGGGPVGIETISA-GLSEPRDAIE--DLIEPYM 304
            L     D +G        LT  + ++     + ++TI   G+S  +  ++  + I   +
Sbjct: 240 TLGLTGTDSIG------ALLTACVKKDAAAALLTLDTILQNGVSTEQFTVDCTNYIRSLL 293

Query: 305 IQQGFIQR 312
           + +  I +
Sbjct: 294 LIRQGITK 301


>gi|313903079|ref|ZP_07836473.1| Sigma 54 interacting domain protein [Thermaerobacter subterraneus
           DSM 13965]
 gi|313466581|gb|EFR62101.1| Sigma 54 interacting domain protein [Thermaerobacter subterraneus
           DSM 13965]
          Length = 563

 Score = 85.5 bits (210), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 64/299 (21%), Positives = 100/299 (33%), Gaps = 63/299 (21%)

Query: 3   DREGLLS-RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           +++ L   R ++  +      RP+  E+  GQ E    L+     A        HVL  G
Sbjct: 43  EQDRLSQLRAIALTEPLAERTRPQRFEDIVGQEEGLRALR-----AALCGPNPQHVLIYG 97

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR--------------- 106
           PPG+GKT  A++V  E   N RS   P  A   ++ A     ++R               
Sbjct: 98  PPGVGKTAAARLVLEEAKRNPRSPFRP-DAAFVEIDATTARFDERGIADPLIGSVHDPIY 156

Query: 107 ------------------------DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGP 142
                                    +LFIDEI  L  +    L   +ED ++ L   E  
Sbjct: 157 QGAGPLGVAGIPQPKPGAVTRAHGGILFIDEIGELHPVQMNKLLKVLEDRKVLL---ESA 213

Query: 143 SARSVKINLS-------------RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
                  NL               F L+ ATTR+     P      + I       E++ 
Sbjct: 214 YYNPDDPNLPAHIKDVFENGLPADFRLVGATTRMPDEIPPAIRSRCVEIFFRPLTPEEVG 273

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
            I +R A    L + +  A  +  R     R A  +++     AE    + +T    + 
Sbjct: 274 LIARRAAARLDLPMDE-GAVRVIERYARNGREAVNIVQIAAGLAETEGRRRVTTADVEW 331


>gi|28804790|dbj|BAC57944.1| Werner helicase interacting protein [Gallus gallus]
          Length = 354

 Score = 85.5 bits (210), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 43/241 (17%), Positives = 82/241 (34%), Gaps = 19/241 (7%)

Query: 104 EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATT 161
           + + +LFIDEIHR +   ++   P +E   + L+    E PS +     LSR  +I    
Sbjct: 8   KRKTILFIDEIHRFNKSQQDTFLPHVECGTVTLIGATTENPSFQVNAALLSRCRVIVLEK 67

Query: 162 RVGLLTNPLQDR----FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRG 217
                   +  R     G+ +     +     T   + +    + + ++A   +A    G
Sbjct: 68  LSVEAMEAILLRAVKSLGVQVLGQGNQHSSSVTGSSKESSELPVYIEEKALSTLAYLCDG 127

Query: 218 TPRIAGRLLRRVRDFAEVAHAKT----ITREIADAALLRLAIDKMGFDQLDLRYLTMIAR 273
             R     L+        A   T             L+     K G  +  + Y      
Sbjct: 128 DARTGLNGLQLAVQARLAAGKTTLLSFTEGCSVSGVLITEEHVKEGLQRSHILYDRAGEE 187

Query: 274 NFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ-GFIQRT-PRGRLLMPIAWQHLGIDI 331
           ++         ISA     R + E+    ++ +     +R+    R L+  A + +G+  
Sbjct: 188 HYNC-------ISALHKSMRGSDENASLYWLARMLEGGERSLYVARRLVRFASEDIGLAD 240

Query: 332 P 332
           P
Sbjct: 241 P 241


>gi|327398754|ref|YP_004339623.1| DNA polymerase III subunits gamma and tau [Hippea maritima DSM
           10411]
 gi|327181383|gb|AEA33564.1| DNA polymerase III, subunits gamma and tau [Hippea maritima DSM
           10411]
          Length = 417

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 73/310 (23%), Positives = 121/310 (39%), Gaps = 45/310 (14%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH-VLFVGPPGLGKTTLAQVVARE 77
               RP  L E  GQ  A + LK  IE      E L H +L  GP G GKT+LA+++A+ 
Sbjct: 6   ARKYRPSKLSEVIGQPVATTILKNAIE-----TEKLHHAILLAGPMGTGKTSLARIIAKS 60

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAME 130
           L       +GP     G+  A       +DV  I+       +I     I+E + YP ++
Sbjct: 61  LNCQ----NGPTTEPCGECEACKAIALGKDVDVIEIDGASNRKIENARNIIESVKYPPLK 116

Query: 131 DFQLDLMVGEGPSA---------RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
                 ++ E             ++++        I ATT +  +   +  R  I     
Sbjct: 117 RRFKVYIIDEIHMFTLEAFNAMLKTIEEPPEYVKFIFATTAIEKIPETILSRCQILTLNR 176

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
             + E ++  ++  A    + + +EA   I+  S G+ R+A   L R   F       TI
Sbjct: 177 IPKNE-IEKKLKYIASQENIKIDNEAIELISYASTGSLRVAEGFLDRCIAF---KPTDTI 232

Query: 242 TREIADAALLRLAIDKMGFDQLDL--RYLTMIARNFGGGPV----GIETISAGLSE-PRD 294
           T+E             +G    D+   Y+  I +N     +     + TIS+ L    + 
Sbjct: 233 TKEDVSV--------VVGIPTKDVVNSYVEFIIQNKAKEALDIIKNLNTISSNLQTFTKQ 284

Query: 295 AIEDLIEPYM 304
            IE++IE  +
Sbjct: 285 VIENIIEKDL 294


>gi|290968389|ref|ZP_06559929.1| ATP-dependent protease, Lon family [Megasphaera genomosp. type_1
           str. 28L]
 gi|290781576|gb|EFD94164.1| ATP-dependent protease, Lon family [Megasphaera genomosp. type_1
           str. 28L]
          Length = 635

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 58/250 (23%), Positives = 98/250 (39%), Gaps = 56/250 (22%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           ++ +  +RP+TL+   GQ  A   ++     +K  +    H+L  GPPG+GKTT A+++ 
Sbjct: 164 ESVMERVRPKTLQAVVGQERAVEAMQ-----SKLASVYPQHLLLYGPPGVGKTTAARIIL 218

Query: 76  RELG----------------------VNFRSTSGPVIAKA---------GDLA------- 97
           +E                         + R  + P++             DLA       
Sbjct: 219 QEAKQLPFTPFAAEAPFIETDGTTLRWDSRDMTNPLLGSVHDPIYQGARKDLADTGIPEP 278

Query: 98  --ALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL----MVGEGPSARSVKINL 151
              L+T      +LFIDEI  +  ++   L   +ED ++         E P+  +    L
Sbjct: 279 KPGLVTEAHGG-ILFIDEIGEMDPMLLNKLLKVLEDKKVTFDSAYYDEEDPNVPAYIHKL 337

Query: 152 SR------FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTD 205
            R      F LI ATTR     NP        +       +D++ IV+  AK   +++ D
Sbjct: 338 FRDGAPADFILIGATTRDPSEINPAIRSRCAEVFFEPLVPQDIEKIVENAAKQLQVSLAD 397

Query: 206 EAACEIAMRS 215
             A +IA  +
Sbjct: 398 GVAAKIASYT 407


>gi|317123027|ref|YP_004103030.1| Sigma 54 interacting domain protein [Thermaerobacter marianensis
           DSM 12885]
 gi|315593007|gb|ADU52303.1| Sigma 54 interacting domain protein [Thermaerobacter marianensis
           DSM 12885]
          Length = 564

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 65/299 (21%), Positives = 102/299 (34%), Gaps = 63/299 (21%)

Query: 3   DREGLLS-RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           +++ L S R+++  +      RP+  E+  GQ E    L+     A        HVL  G
Sbjct: 43  EQDRLASLRSIALTEPLSERTRPQRFEDIVGQEEGLRALR-----AALCGPNPQHVLIYG 97

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR--------------- 106
           PPG+GKT  A++V  E   N RS   P  A   ++ A     ++R               
Sbjct: 98  PPGVGKTAAARLVLEEAKRNPRSPFRP-DAAFVEIDATTARFDERGIADPLIGSVHDPIY 156

Query: 107 ------------------------DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGP 142
                                    +LFIDEI  L  +    L   +ED ++ L   E  
Sbjct: 157 QGAGPLGVAGIPQPKPGAVTRAHGGILFIDEIGELHPVQMNKLLKVLEDRKVLL---ESA 213

Query: 143 SARSVKINLS-------------RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
                  NL               F L+ ATTR+     P      + I       E++ 
Sbjct: 214 YYNPDDPNLPAHIKDAFENGLPADFRLVGATTRMPEEIPPAIRSRCVEIFFRPLAPEEVG 273

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
            I +R A    L + +  A  +  R     R A  +++     AE    + +T    + 
Sbjct: 274 LIARRAAARLDLPMDE-GAVRVIERYARNGREAVNIVQIAAGLAETEGRRRVTTADVEW 331


>gi|294155578|ref|YP_003559962.1| ATPase, AAA family [Mycoplasma crocodyli MP145]
 gi|291600310|gb|ADE19806.1| ATPase, AAA family [Mycoplasma crocodyli MP145]
          Length = 404

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/182 (21%), Positives = 77/182 (42%), Gaps = 12/182 (6%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
            + LRP+ L++  GQ      LK  +       +     +F G  G GKT+ +  +A E+
Sbjct: 5   ANELRPKILDDIIGQSHILDLLKKIV-----LNKVKTSFIFFGESGTGKTSCSFALANEM 59

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM- 137
            + +   +  + +K+     L+  LE+ +++ IDEIHRL+   ++IL   +E  ++ +  
Sbjct: 60  KLKYDYFNASIDSKSD----LVKKLENNEIIIIDEIHRLNKDKQDILLSFLEFDKIIVYA 115

Query: 138 -VGEGPSARSVKINLSRFTLIAATTRVGL-LTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
              E P  R      SR  +++        L + L             + E +  +V+  
Sbjct: 116 TTTENPYFRVNPALRSRMQILSFEKLKEHDLFSGLSKIKNKYFNSLNLDDEIILELVRYS 175

Query: 196 AK 197
           A 
Sbjct: 176 AG 177


>gi|121534154|ref|ZP_01665979.1| Endopeptidase La [Thermosinus carboxydivorans Nor1]
 gi|121307257|gb|EAX48174.1| Endopeptidase La [Thermosinus carboxydivorans Nor1]
          Length = 562

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 72/307 (23%), Positives = 107/307 (34%), Gaps = 58/307 (18%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M   + L  R +S  +      RP T  E  GQ E    L+     A        HVL  
Sbjct: 45  MDKLQRL--REISLTEPLAEKTRPSTFAEIVGQEEGLKALR-----AALCGPNPQHVLIY 97

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------------- 106
           GPPG+GKT  A++V  E   N  S  GP  AK  ++ A     ++R              
Sbjct: 98  GPPGVGKTAAARLVLEEAKRNPLSPFGP-NAKFVEMDATTARFDERGIADPLIGTVHDPI 156

Query: 107 -------------------------DVLFIDEIHRLSIIVEEILYPAMEDFQLDL----M 137
                                     +LFIDEI  L  I    L   +ED ++ L     
Sbjct: 157 YQGAGALGMAGIPQPKPGAVTKAHGGILFIDEIGELHHIQMNKLLKVLEDRKVFLESSYY 216

Query: 138 VGEGPSARSVKINL------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
             E  +  S   ++      + F L+ ATTR+     P      + I       +++  I
Sbjct: 217 NSEDTNIPSHIHDIFQNGLPADFRLVGATTRMAHEIPPAIRSRCVEIFFRPLLPDEISLI 276

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
               AK  G  + D    +I  R   + R A  +++     A+    KTITR  A+  + 
Sbjct: 277 AGNAAKKIGFGLED-GVLDIVKRYATSGREAVNIIQIAAGIAQNEGNKTITRAHAEWVIN 335

Query: 252 RLAIDKM 258
               +  
Sbjct: 336 FGQYNPR 342


>gi|260892395|ref|YP_003238492.1| Sigma 54 interacting domain protein [Ammonifex degensii KC4]
 gi|260864536|gb|ACX51642.1| Sigma 54 interacting domain protein [Ammonifex degensii KC4]
          Length = 557

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 64/298 (21%), Positives = 100/298 (33%), Gaps = 56/298 (18%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           R +S  +     +RP++  E  GQ EA   L+     A        HVL  GPPG+GKT 
Sbjct: 55  RAISLSEPLAEKVRPQSFAEIVGQEEAIKALR-----AALCGPHPQHVLLYGPPGVGKTA 109

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR----------------------- 106
            A++V  E   N  S  G   AK  ++ A     ++R                       
Sbjct: 110 AARLVLEEAKHNPLSPFGKE-AKFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGM 168

Query: 107 ----------------DVLFIDEIHRLSIIVEEILYPAMEDFQLDL----MVGEGPSARS 146
                            +LF+DEI  L  I    L   +ED ++ L       + P+  +
Sbjct: 169 AGIPQPKPGAVTRAHGGILFLDEIGELHPIQMSKLLKVLEDRRVFLESAYYSPDDPNIPA 228

Query: 147 VKINL------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
              ++      + F L+ ATTR      P      + I       E++K I     K  G
Sbjct: 229 HIHDIFQNGLPADFRLVGATTRSPEELPPALRSRCVEIFFRPLTPEEIKLIAANALKRLG 288

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKM 258
           + V +     +A  +    R A  +++     A     K I     +        D  
Sbjct: 289 MEVEEGVLEVVAKYATN-GREAVNMVQLAAGLALAEGRKGIRVADMEWVASLGQYDPR 345


>gi|149181757|ref|ZP_01860248.1| Lon-like ATP-dependent protease [Bacillus sp. SG-1]
 gi|148850498|gb|EDL64657.1| Lon-like ATP-dependent protease [Bacillus sp. SG-1]
          Length = 553

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 64/348 (18%), Positives = 121/348 (34%), Gaps = 70/348 (20%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M++   + R++S  +     +RP++  +  GQ +   +LK     A        HVL  G
Sbjct: 44  MEQLRKM-RSISLSEPLSEKVRPQSFADIVGQEDGIKSLK-----AALCGPNPQHVLIYG 97

Query: 62  PPGLGKTTLAQVVARELGVNFRSTS----------------------GPVIAKAGD---- 95
           PPG+GKT  A++V +E     +S                         P+I    D    
Sbjct: 98  PPGVGKTAAARLVLQEAKDQMKSPFRKSSVFVELDATTARFDERGIADPLIGSVHDPIYQ 157

Query: 96  -------------LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL----MV 138
                            +TN     VLFIDEI  L  I    L   +ED ++ L      
Sbjct: 158 GAGAMGQAGIPQPKQGAVTNAHGG-VLFIDEIGELHPIQMNKLLKVLEDRKVFLESAYYS 216

Query: 139 GEGPSARSVKINL------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            E     +   ++      + F L+ ATTR      P      + +       E++  + 
Sbjct: 217 EENTQIPTHIHDIFKNGLPADFRLVGATTRTPSEIPPAIRSRCMEVFFRELNKEEVMEVA 276

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
              ++   ++++      +A  +R   R A  +++ V   A   + ++I  +  +  +  
Sbjct: 277 LNASEKVDISISQAGVELLASYARN-GREAVNMVQIVAGLAITENRQSIDDKDIEWMIQS 335

Query: 253 LAIDKMGFDQLDLRYLTMIARNFGGGPV-GIETISAGLSEPRDAIEDL 299
             +       +D +          G PV G+    A       ++ ++
Sbjct: 336 SQLSPR----MDRKI--------DGKPVIGLVNGLAVTGPNTGSLLEI 371


>gi|292654383|ref|YP_003534280.1| replication factor C small subunit [Haloferax volcanii DS2]
 gi|291370302|gb|ADE02529.1| replication factor C small subunit [Haloferax volcanii DS2]
          Length = 327

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 52/236 (22%), Positives = 88/236 (37%), Gaps = 36/236 (15%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +  I   RP+T ++  GQ +    L+ +IE      + L H+LF GP G+GKTT A  +A
Sbjct: 15  EIWIEKYRPQTFDDVYGQDDIVERLRSYIE-----RDDLPHLLFAGPAGVGKTTSATAIA 69

Query: 76  RE-----LGVNFRSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLSIIVEE 123
           R         NF   +         +   + N            V+F+DE   L+   + 
Sbjct: 70  RAIYGDDWRGNFLELNASDERGIDVVRDRIKNFARSSFGGHDYRVIFLDEADSLTNDAQS 129

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
            L   ME F                 + +RF  I +      + +P+Q R  +  R +  
Sbjct: 130 ALRRTMEQFS----------------DNTRF--ILSCNYSSKIIDPIQSRCAV-FRFSPL 170

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
             + +   V+  A    + VT++    +   + G  R A   L+      EV   +
Sbjct: 171 GDDAIAEQVRDIAAAEDIEVTEDGLDALVYAAGGDMRRAINSLQAAATTGEVVDEE 226


>gi|258649122|ref|ZP_05736591.1| DNA polymerase III, gamma and tau subunit [Prevotella tannerae ATCC
           51259]
 gi|260850774|gb|EEX70643.1| DNA polymerase III, gamma and tau subunit [Prevotella tannerae ATCC
           51259]
          Length = 594

 Score = 84.4 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 56/247 (22%), Positives = 84/247 (34%), Gaps = 54/247 (21%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP   ++  GQ    + LK  I A K         LF GP G+GKTT A++ A+ +
Sbjct: 8   ARKYRPTNFDDVVGQHALTTTLKNAIAAGKLAHAY----LFCGPRGVGKTTCARIFAKTI 63

Query: 79  GV-------------------------NFRSTSGPVIAKAGDLAALLT------NLEDRD 107
                                      N           A D+ AL+        +    
Sbjct: 64  NCLHPGPGGEACGECESCQAFQAGRSLNVHELDAASNNSAEDIRALIEQVNILPQMGRYK 123

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           V  IDE+H LS          +E+          P A ++ I         ATT    L 
Sbjct: 124 VFIIDEVHMLSTAAANAFLKTLEE----------PPAHAIFIL--------ATTEKQKLL 165

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             +  R  I       E+ D+   ++R A+   +   + A   IA ++ G  R A  +  
Sbjct: 166 PTILSRCQIYDFNRM-EVNDIVHHLKRVAEDQHIQYEEAALNVIAQKADGGMRDALSIFD 224

Query: 228 RVRDFAE 234
           +V  FAE
Sbjct: 225 QVAGFAE 231


>gi|302390301|ref|YP_003826122.1| ATP-dependent protease LonB [Thermosediminibacter oceani DSM 16646]
 gi|302200929|gb|ADL08499.1| ATP-dependent protease LonB [Thermosediminibacter oceani DSM 16646]
          Length = 555

 Score = 84.4 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 66/295 (22%), Positives = 97/295 (32%), Gaps = 56/295 (18%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           R +S  +      RP   E+  GQ E    LK     A        HV+  GPPG+GKT 
Sbjct: 52  REISLTEPLAEKTRPTKFEDIIGQEEGLKALK-----AALCGPNPQHVIIYGPPGIGKTA 106

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDV--------------------- 108
            A++V  E      S  GP  AK  ++ A +   ++R +                     
Sbjct: 107 AARLVLEEAKKTPGSPFGP-DAKFVEVDATIARFDERGIADPLIGSVHDPIYQGAGPLGI 165

Query: 109 ------------------LFIDEIHRLSIIVEEILYPAMEDFQLDL----MVGEGPSARS 146
                             LFIDEI  L  +    L   +ED ++ L       E P+   
Sbjct: 166 AGIPQPKPGAVTKAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLESAYYNSEDPNIPL 225

Query: 147 V------KINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
                  K   + F L+ ATTR      P      I I       ED+  I +  A    
Sbjct: 226 YIHEIFQKGLPADFRLVGATTRTPQEIPPAIRSRCIEIFFKPLSPEDIGKIARNAAAKIS 285

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255
             + +  A EI  +     R A  +L+     A +   K I  +  +  +     
Sbjct: 286 FEMEER-AVEIIKKYATNGREAVNILQMAAGLAMMERRKKIEAKDVEWVINSGQY 339


>gi|288802676|ref|ZP_06408114.1| DNA polymerase III, gamma and tau subunit protein [Prevotella
           melaninogenica D18]
 gi|288334826|gb|EFC73263.1| DNA polymerase III, gamma and tau subunit protein [Prevotella
           melaninogenica D18]
          Length = 603

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 47/280 (16%), Positives = 104/280 (37%), Gaps = 26/280 (9%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP + +   GQ    + LK  +++ K         LF GP G+GKTT A++ A+ +
Sbjct: 8   ARKYRPMSFDSVVGQQALTTTLKNAVKSGKLAHAY----LFCGPRGVGKTTCARIFAKAI 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI------IVEEILYPAMEDF 132
                +  G    +     A        ++  +D     S+      + +  + P +  +
Sbjct: 64  NCEHPTADGEACNECESCKA-FGEGRSYNIFELDAASNNSVENIKSLMDQTRIPPQVGRY 122

Query: 133 QLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           ++ ++               ++++   +    I ATT    +   +  R  I        
Sbjct: 123 KVFIIDEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQIYDFERM-T 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE--VAHAKTIT 242
           + ++   ++R A+   +   +EA   IA ++ G  R A  +  +   F++  + + K I 
Sbjct: 182 VPNIINHLKRVAEKENIQFDEEALNVIAEKADGGMRDALSIFDQAASFSQGNITYQKVIE 241

Query: 243 REIADAALLRLAIDKMGFD----QLDLRYLTMIARNFGGG 278
                 A     I  +  +    ++ +   ++I + F GG
Sbjct: 242 DLNVLDAENYFNIIDLALENKVSEIMVLLNSVINKGFDGG 281


>gi|302345714|ref|YP_003814067.1| DNA polymerase III, subunit gamma and tau [Prevotella
           melaninogenica ATCC 25845]
 gi|302150079|gb|ADK96341.1| DNA polymerase III, subunit gamma and tau [Prevotella
           melaninogenica ATCC 25845]
          Length = 603

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 47/280 (16%), Positives = 104/280 (37%), Gaps = 26/280 (9%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP + +   GQ    + LK  +++ K         LF GP G+GKTT A++ A+ +
Sbjct: 8   ARKYRPMSFDSVVGQQALTTTLKNAVKSGKLAHAY----LFCGPRGVGKTTCARIFAKAI 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI------IVEEILYPAMEDF 132
                +  G    +     A        ++  +D     S+      + +  + P +  +
Sbjct: 64  NCEHPTADGEACNECESCKA-FGEGRSYNIFELDAASNNSVENIKSLMDQTRIPPQVGRY 122

Query: 133 QLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           ++ ++               ++++   +    I ATT    +   +  R  I        
Sbjct: 123 KVFIIDEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQIYDFERM-T 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE--VAHAKTIT 242
           + ++   ++R A+   +   +EA   IA ++ G  R A  +  +   F++  + + K I 
Sbjct: 182 VPNIINHLKRVAEKENIQFDEEALNVIAEKADGGMRDALSIFDQAASFSQGNITYQKVIE 241

Query: 243 REIADAALLRLAIDKMGFD----QLDLRYLTMIARNFGGG 278
                 A     I  +  +    ++ +   ++I + F GG
Sbjct: 242 DLNVLDAENYFNIIDLALENKVSEIMVLLNSVINKGFDGG 281


>gi|238924018|ref|YP_002937534.1| Holliday junction DNA helicase B [Eubacterium rectale ATCC 33656]
 gi|238875693|gb|ACR75400.1| Holliday junction DNA helicase B [Eubacterium rectale ATCC 33656]
          Length = 79

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 44/70 (62%), Gaps = 1/70 (1%)

Query: 6  GLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           ++S  + +ED  I   LRP   +++ GQ +   NLK++IEAAK+R EALDHVLF GP  
Sbjct: 3  RVISTQLQEEDIKIEKSLRPMYFDDYIGQQKIKDNLKIYIEAAKSRGEALDHVLFYGPRD 62

Query: 65 LGKTTLAQVV 74
          L +  L + +
Sbjct: 63 LERQHLQESL 72


>gi|167912491|ref|ZP_02499582.1| Holliday junction DNA helicase B [Burkholderia pseudomallei 112]
          Length = 77

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/68 (54%), Positives = 47/68 (69%), Gaps = 2/68 (2%)

Query: 5  EGLL--SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
          E ++  +   S E+A    LRPR L+E+ GQ +    L++FIEAAK R+EALDHVL  GP
Sbjct: 10 ERIIAATPASSHEEAFERALRPRQLDEYVGQEKVRDQLEIFIEAAKRRSEALDHVLLFGP 69

Query: 63 PGLGKTTL 70
          PGLGKTTL
Sbjct: 70 PGLGKTTL 77


>gi|297616504|ref|YP_003701663.1| Sigma 54 interacting domain protein [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297144341|gb|ADI01098.1| Sigma 54 interacting domain protein [Syntrophothermus lipocalidus
           DSM 12680]
          Length = 556

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 67/293 (22%), Positives = 109/293 (37%), Gaps = 58/293 (19%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +   S  RP   EE  GQ E    LK     A        HV+  GPPG+GKT  A++V 
Sbjct: 58  EPLSSKTRPSRFEEIVGQEEGIEALK-----AALCGPNPQHVIIYGPPGVGKTAAARLVL 112

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRD---------------------------- 107
                +  S  G   A+  ++ A +T  ++R+                            
Sbjct: 113 EYAKADPLSPFGG-QARFVEIDATITRFDERNIADPLIGSVHDPIYQGAGSLGLAGIPQP 171

Query: 108 -----------VLFIDEIHRLSIIVEEILYPAMEDFQLDL----MVGEGPSARSVKINL- 151
                      +LFIDEI  L       L   +E+ ++ L       E  +  S   ++ 
Sbjct: 172 KPGAVTKAHGGILFIDEIGELHPTHLNKLLKVLEERKVYLESAYYSQEDKNIPSYIHDIF 231

Query: 152 -----SRFTLIAATTRVG-LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTD 205
                + F L+ ATT+    L   L+ R  + I     E ++++ I +R A+  G A+ +
Sbjct: 232 QNGLPADFRLVGATTKSPEELPAALRSRC-MEIFFRPLERDEIQLIARRAAEKIGCAIDE 290

Query: 206 EAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKM 258
           +A  E+A  +    R A  +++     A V  A  I REI    +     +  
Sbjct: 291 DALAEVARYATN-GREAVNIIQLAAGIATVKGASRIDREILARVVNHGRFNPR 342


>gi|167045379|gb|ABZ10035.1| putative ATPase family associated with various cellular activities
           (AAA) [uncultured marine microorganism HF4000_APKG10F13]
          Length = 323

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 83/229 (36%), Gaps = 37/229 (16%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E+  +   RP TL E  GQ    + L     A+  R +++ H+LF GPPG GKTT +  +
Sbjct: 2   EEIWVEKYRPATLAEVVGQSVVTTRL-----ASYVREKSMPHLLFAGPPGTGKTTCSLAL 56

Query: 75  ARE-----LGVNFRSTSGPVIAKAGDLAALLTNL--------EDRDVLFIDEIHRLSIIV 121
           ARE        N    +         +   +               ++F+DE   L+   
Sbjct: 57  AREMFGEHWQHNLHELNASDERGIDVVRGKIKEFARTAPIGGGGFKIIFLDEADALTSAA 116

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           +  L   ME +                        + +      +  P+Q R  +  R  
Sbjct: 117 QAALRRTMEKYSRT------------------CRFVLSCNYSSKIIEPIQSRCAV-FRFR 157

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
             + ED++  ++  A    L V D+A   +A  ++G  R A   L+   
Sbjct: 158 PLQGEDVQRYLKFIAGREKLKVNDDAYEALAYLAQGDLRRAINSLQMAA 206


>gi|315022325|gb|EFT35353.1| putative DNA polymerase III [Riemerella anatipestifer RA-YM]
          Length = 559

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 60/258 (23%), Positives = 93/258 (36%), Gaps = 45/258 (17%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+  +   GQ      L    E A A  +    +LF GP G+GKTT A+++AR++
Sbjct: 8   ARKYRPQEFDTVVGQSHITDTL----EHAIAENQLAQALLFCGPRGVGKTTCARILARKI 63

Query: 79  G------------VNFRSTSGPVIAKAGDLAALLT------NLEDRDVLFIDEIHRLSII 120
                         N             D+  L         +    V  IDE+H LS  
Sbjct: 64  NEKDGATSEDGFSYNIFELDAASNNSVDDIRELTDQVRYAPQVGKYKVYIIDEVHMLSSQ 123

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                   +E+          P A ++ I         ATT    +   +  R  I    
Sbjct: 124 AFNAFLKTLEE----------PPAHAIFIL--------ATTEKHKIIPTILSRCQIYDFK 165

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
               IED++  +++ A   G++  D+A   IA ++ G  R A  +  R+  F +    K 
Sbjct: 166 RI-TIEDIQAHLRKIADKEGISYEDDALFLIAQKADGALRDALSIFDRLVTFTQ----KN 220

Query: 241 ITREIADAALLRLAIDKM 258
           IT   A   L  L  D+ 
Sbjct: 221 ITLAKAAEVLNILDYDQY 238


>gi|302336636|ref|YP_003801842.1| DNA polymerase III subunits gamma and tau [Spirochaeta smaragdinae
           DSM 11293]
 gi|301633821|gb|ADK79248.1| DNA polymerase III, subunits gamma and tau [Spirochaeta smaragdinae
           DSM 11293]
          Length = 581

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 64/309 (20%), Positives = 116/309 (37%), Gaps = 42/309 (13%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  E   GQ    S L   + + +         LF GP G+GKT+ A+++A+ L    
Sbjct: 11  RPQGFETLVGQDFVVSTLSSAVSSGRIAHAY----LFSGPRGVGKTSAARLLAKALNCEK 66

Query: 83  RSTSGPVIAKAGDLA--ALLTNLEDRDVLFIDEIHRLSII-----VEEILYPAMEDFQLD 135
               GP  A  G+ +    ++     DV+ ID     S+       +E+L+         
Sbjct: 67  ----GPTPAPCGECSSCQEISRGNSLDVIEIDGASNTSVNDVREIKDEVLFAPNSGRYKV 122

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             ++++        I ATT +  +   ++ R          + E
Sbjct: 123 YIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEIHKVPATIRSRCQ-QFNFRLIQPE 181

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
            +K  +   A    +   DEA   IA  + G+ R A  L  +V  F+     K IT E  
Sbjct: 182 TIKNKLAEAAAELQIEAEDEALFWIAKEATGSLRDAYTLFDQVASFS----DKGITLEEI 237

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGI--ETISAGLSEPRDAIEDLIEPY- 303
              L  +     G ++++      +A    G  + +    ++ G++  +  I DL E + 
Sbjct: 238 RQKLGLV-----GLERIN-GVAEALAEEDAGKAIELTESVLADGVAVEQF-IIDLTEYFR 290

Query: 304 ---MIQQGF 309
               I+ G 
Sbjct: 291 NLLFIRHGI 299


>gi|300778485|ref|ZP_07088343.1| DNA polymerase III, gamma/tau subunit DnaX [Chryseobacterium gleum
           ATCC 35910]
 gi|300503995|gb|EFK35135.1| DNA polymerase III, gamma/tau subunit DnaX [Chryseobacterium gleum
           ATCC 35910]
          Length = 368

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 57/258 (22%), Positives = 94/258 (36%), Gaps = 45/258 (17%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+  +   GQ      L+  IE ++        +LF GP G+GKTT A+++AR++
Sbjct: 8   ARKYRPQEFDTVVGQSHITDTLEHAIEESQLAQA----LLFCGPRGVGKTTCARILARKI 63

Query: 79  G------------VNFRSTSGPVIAKAGDLAALLT------NLEDRDVLFIDEIHRLSII 120
                         N             D+  L+        +    V  IDE+H LS  
Sbjct: 64  NEKDGSVSEDGFAYNIYELDAASNNSVDDIRELIDQVRFAPQVGKYKVYIIDEVHMLSSA 123

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                   +E+          P A ++ I         ATT    +   +  R  I    
Sbjct: 124 AFNAFLKTLEE----------PPAHAIFIL--------ATTEKHKIIPTILSRCQIYDFK 165

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
               IED++  ++  A+   +   D+A   IA ++ G  R A  +  R+  F++    + 
Sbjct: 166 RI-VIEDIQNHLRNIAEKENIRYEDDALYLIAQKADGALRDALSIFDRLSTFSQ----RN 220

Query: 241 ITREIADAALLRLAIDKM 258
           IT   A   L  L  D+ 
Sbjct: 221 ITLAKAAEVLNILDYDQY 238


>gi|255535502|ref|YP_003095873.1| putative DNA polymerase III [Flavobacteriaceae bacterium 3519-10]
 gi|255341698|gb|ACU07811.1| putative DNA polymerase III [Flavobacteriaceae bacterium 3519-10]
          Length = 367

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 55/258 (21%), Positives = 90/258 (34%), Gaps = 45/258 (17%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+  +   GQ      L+  IE  +        +LF GP G+GKTT A+++AR++
Sbjct: 8   ARKYRPQEFDTVVGQSHITDTLEHAIEENQLAQA----LLFCGPRGVGKTTCARILARKI 63

Query: 79  G------------VNFRSTSGPVIAKAGDLAALLT------NLEDRDVLFIDEIHRLSII 120
                         N             ++  L         +    +  IDE+H LS  
Sbjct: 64  NERDGSTSEDGFSYNIFELDAASNNGVEEIRDLTDQVRFAPQVGKYKIYIIDEVHMLSSA 123

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                   +E+          P A ++ I         ATT    +   +  R  I    
Sbjct: 124 AFNAFLKTLEE----------PPAHAIFIL--------ATTEKHKIIPTILSRCQIYDFK 165

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
               IED++  ++  A   G+   D+A   +A ++ G  R A  +  R+  F +    K 
Sbjct: 166 RI-TIEDIQNQLRNIADKEGIKYEDDALYMVAQKADGALRDALSIFDRLSTFTQ----KN 220

Query: 241 ITREIADAALLRLAIDKM 258
           IT       L  L  D+ 
Sbjct: 221 ITLAKTAEVLNILDYDQY 238


>gi|282881347|ref|ZP_06290026.1| DNA polymerase III, subunit gamma and tau [Prevotella timonensis
           CRIS 5C-B1]
 gi|281304753|gb|EFA96834.1| DNA polymerase III, subunit gamma and tau [Prevotella timonensis
           CRIS 5C-B1]
          Length = 610

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 55/297 (18%), Positives = 107/297 (36%), Gaps = 36/297 (12%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L+S  +          RP + +   GQ    + LK  +++ K         LF GP G+G
Sbjct: 13  LISLIMKDYIVSARKYRPTSFDTVVGQTALITTLKNAVKSGKLAHAY----LFCGPRGVG 68

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI------I 120
           KTT A++ A+ +     +  G    +     A        ++  +D     S+      +
Sbjct: 69  KTTCARIFAKAINCLHPTADGEACNECESCKA-FNEQRSYNIFELDAASNNSVENIKSLM 127

Query: 121 VEEILYPAMEDFQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
            +  + P +  +++ ++               ++++   +    I ATT    +   +  
Sbjct: 128 DQTRIPPQVGKYKVFIIDEVHMLSTSAFNAFLKTLEEPPAHVIFILATTEKHKILPTILS 187

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R  I         + +   +++ A+  G+   DEA   IA ++ G  R A  +  +   F
Sbjct: 188 RCQIYDFERMTTNDII-NHLKKVAEKEGITYEDEALNIIAEKADGGMRDALSVFDQAASF 246

Query: 233 AEVAHAKTITREIADAALLRLAIDKMGFDQLD-----------LRYLTMIARNFGGG 278
            +      IT       L  L  D   F+ +D           L   ++IA+ F GG
Sbjct: 247 CQ----GNITYAKVTEDLNVLDTDNY-FNIVDLCLQNKVSDAMLLLNSIIAKGFAGG 298


>gi|307595017|ref|YP_003901334.1| Replication factor C [Vulcanisaeta distributa DSM 14429]
 gi|307550218|gb|ADN50283.1| Replication factor C [Vulcanisaeta distributa DSM 14429]
          Length = 327

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 93/245 (37%), Gaps = 37/245 (15%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           S+E   +   RP  +++   Q    + +K  +         + H+LF GPPG GKTT+A 
Sbjct: 3   SEEVLWVEKYRPSRIDDIIDQDHVKARVKEML-----ANGNIPHLLFFGPPGTGKTTMAL 57

Query: 73  VVAR------------ELGVNFRSTSGPVIAKAGDLAALLTNLE-DRDVLFIDEIHRLSI 119
            +AR            EL  +       +  K  + A  +  ++    ++ +DE   ++ 
Sbjct: 58  AIARELYGDAWRENVLELNASDERGIAMIREKVKEFAKTMPTVKAPFRLIILDEADNMTP 117

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
             ++ L   ME +   +                RF L+A       +  P+Q R  +  R
Sbjct: 118 DAQQALRRIMEMYTTSV----------------RFILLA--NYPSGIIEPIQSRCSL-FR 158

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
            +    + +   ++  A   G+ VTD+A   I   S+G  R A   L+       V   +
Sbjct: 159 FSPLPKDAVLGRLREIASKEGVKVTDDALEAIWDVSQGDMRKAINTLQAAASLGGVVDEE 218

Query: 240 TITRE 244
            + + 
Sbjct: 219 VVYKA 223


>gi|170290625|ref|YP_001737441.1| DNA replication ATPase HolB small subunit [Candidatus Korarchaeum
           cryptofilum OPF8]
 gi|170174705|gb|ACB07758.1| ATPase involved in DNA replication HolB, small subunit [Candidatus
           Korarchaeum cryptofilum OPF8]
          Length = 331

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 56/243 (23%), Positives = 89/243 (36%), Gaps = 39/243 (16%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +  +   RP+TL++  GQ +    LK F+E       ++ H+LF GP G GKTT A  +A
Sbjct: 4   ELWVEKYRPKTLDDVVGQDDIIRALKGFVE-----KRSMPHLLFAGPAGTGKTTTALALA 58

Query: 76  R--------------ELGVNFRSTSGPVIAKAGDLAALLTNLE-DRDVLFIDEIHRLSII 120
                          EL  +       +  K  D A      E    ++ +DE   L+  
Sbjct: 59  NDLYKSEELVAANYLELNASDERGIDTIRTKIKDFAKTAPFGEVPFKIIHLDEADNLTAD 118

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            ++ L   ME +                   +RF    A      +  P+Q R  +  R 
Sbjct: 119 AQQALRRIMEMYSAT----------------TRFIF--ACNYSSKIIEPIQSRCAV-FRF 159

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
                E +K  +   A+  GL  T++    I   + G  R A  LL+     A    +K 
Sbjct: 160 GPIPEEAIKNRLIMIAEREGLKYTEDGISAIIYVAEGDLRKAINLLQTASAMASTVDSKV 219

Query: 241 ITR 243
           + R
Sbjct: 220 VYR 222


>gi|15678269|ref|NP_275384.1| replication factor C small subunit [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|42559322|sp|O26343|RFCS_METTH RecName: Full=Replication factor C small subunit; Short=RFC small
           subunit; AltName: Full=Clamp loader small subunit;
           AltName: Full=mthRFC small subunit
 gi|2621290|gb|AAB84747.1| replication factor C, small subunit [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 321

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 83/230 (36%), Gaps = 36/230 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+ L++  GQ      LK ++E      +++ +++F GP G+GKTT A  +AR
Sbjct: 7   PWVEKYRPQKLDDIVGQEHIIPRLKRYVE-----EKSMPNLMFTGPAGVGKTTAALALAR 61

Query: 77  E-----LGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEI 124
           E        NF   +         +   + N            ++F+DE+  ++   +  
Sbjct: 62  EILGEYWRQNFLELNASDARGIDTVRTSIKNFCRLKPVGAPFRIIFLDEVDNMTKDAQHA 121

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           L   ME +                      + I +      + +P+Q R  I   L    
Sbjct: 122 LRREMEMYTKT------------------SSFILSCNYSSKIIDPIQSRCAIFRFLPLKG 163

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
            + +K  ++  A+   L     A   I   + G  R A  LL+      E
Sbjct: 164 HQIIKR-LEYIAEKENLEYEAHALETIVYFAEGDLRKAINLLQSAASLGE 212


>gi|313206012|ref|YP_004045189.1| DNA polymerase iii, subunits gamma and tau [Riemerella
           anatipestifer DSM 15868]
 gi|312445328|gb|ADQ81683.1| DNA polymerase III, subunits gamma and tau [Riemerella
           anatipestifer DSM 15868]
          Length = 559

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 60/258 (23%), Positives = 93/258 (36%), Gaps = 45/258 (17%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+  +   GQ      L    E A A  +    +LF GP G+GKTT A+++AR++
Sbjct: 8   ARKYRPQEFDTVVGQSHITDTL----EHAIAENQLAQALLFCGPRGVGKTTCARILARKI 63

Query: 79  G------------VNFRSTSGPVIAKAGDLAALLT------NLEDRDVLFIDEIHRLSII 120
                         N             D+  L         +    V  IDE+H LS  
Sbjct: 64  NEKDGATSEDGFSYNIFELDAASNNSVDDIRELTDQVRYAPQVGKYKVYIIDEVHMLSSQ 123

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                   +E+          P A ++ I         ATT    +   +  R  I    
Sbjct: 124 AFNAFLKTLEE----------PPAHAIFIL--------ATTEKHKIIPTILSRCQIYDFK 165

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
               IED++  +++ A   G++  D+A   IA ++ G  R A  +  R+  F +    K 
Sbjct: 166 RI-TIEDIQGHLRKIADKEGISYEDDALFLIAQKADGALRDALSIFDRLVTFTQ----KN 220

Query: 241 ITREIADAALLRLAIDKM 258
           IT   A   L  L  D+ 
Sbjct: 221 ITLAKAAEVLNILDYDQY 238


>gi|317495187|ref|ZP_07953557.1| DNA polymerase III [Gemella moribillum M424]
 gi|316914609|gb|EFV36085.1| DNA polymerase III [Gemella moribillum M424]
          Length = 569

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 90/233 (38%), Gaps = 38/233 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP+T ++  GQ    S LK     A  + +     LF GP G GKT++A++ A 
Sbjct: 4   ALYRKYRPQTFKDIVGQNHIVSVLK----NAMDKNQISHAYLFYGPRGTGKTSIAKIFAN 59

Query: 77  ELGVN------------FRSTSGPVIAKAGDLAALLTNL---EDRDVLFIDEIHRLSIIV 121
           E+  N              + S   + +  D+   +  L       V  IDE+H L+   
Sbjct: 60  EVNNNEVYQKENVDIIEIDAASNNGVDEVRDIKEAIKFLPSEGKYKVYIIDEVHMLTTAA 119

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
              L   +E+          P A  + I         ATT +  + + +  R        
Sbjct: 120 FNALLKTLEE----------PPAHVIFIL--------ATTEIHKIPSTILSRCQ-RFEFK 160

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
               + L   ++  +K   + +  +A  +IA  ++G  R A  +L +V +++E
Sbjct: 161 NLSQQQLVERLKYISKTENIDIEAKAIEKIATLAKGGLRDAISILDQVSNYSE 213


>gi|325336547|gb|ADZ12821.1| DNA polymerase III, gamma/tau subunits [Riemerella anatipestifer
           RA-GD]
          Length = 347

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 60/258 (23%), Positives = 93/258 (36%), Gaps = 45/258 (17%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+  +   GQ      L    E A A  +    +LF GP G+GKTT A+++AR++
Sbjct: 8   ARKYRPQEFDTVVGQSHITDTL----EHAIAENQLAQALLFCGPRGVGKTTCARILARKI 63

Query: 79  G------------VNFRSTSGPVIAKAGDLAALLT------NLEDRDVLFIDEIHRLSII 120
                         N             D+  L         +    V  IDE+H LS  
Sbjct: 64  NEKDGATSEDGFSYNIFELDAASNNSVDDIRELTDQVRYAPQVGKYKVYIIDEVHMLSSQ 123

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                   +E+          P A ++ I         ATT    +   +  R  I    
Sbjct: 124 AFNAFLKTLEE----------PPAHAIFIL--------ATTEKHKIIPTILSRCQIYDFK 165

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
               IED++  +++ A   G++  D+A   IA ++ G  R A  +  R+  F +    K 
Sbjct: 166 RI-TIEDIQAHLRKIADKEGISYEDDALFLIAQKADGALRDALSIFDRLVTFTQ----KN 220

Query: 241 ITREIADAALLRLAIDKM 258
           IT   A   L  L  D+ 
Sbjct: 221 ITLAKAAEVLNILDYDQY 238


>gi|118431491|ref|NP_147997.2| replication factor C small subunit [Aeropyrum pernix K1]
 gi|150421641|sp|Q9YBS7|RFCS_AERPE RecName: Full=Replication factor C small subunit; Short=RFC small
           subunit; AltName: Full=Clamp loader small subunit
 gi|116062816|dbj|BAA80521.2| replication factor C small subunit [Aeropyrum pernix K1]
          Length = 325

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 54/234 (23%), Positives = 90/234 (38%), Gaps = 37/234 (15%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   +   RPR+L++   Q      LK F++        + H+LF GPPG GKTT A  +
Sbjct: 6   EMLWVEKYRPRSLDDIVDQKHVVERLKQFVK-----QRNMPHLLFAGPPGTGKTTAAHAL 60

Query: 75  AR------------ELGVNFRSTSGPVIAKAGDLAALLTNLE-DRDVLFIDEIHRLSIIV 121
           A             EL  +       +  K  + A   T  E    ++ +DE   ++   
Sbjct: 61  AHDLFGENYRQYMLELNASDERGINVIREKVKEFARSRTPPEIPFKIVLLDEADNMTSDA 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           ++ L   ME +                 +++RF LIA       + +P+Q R     R  
Sbjct: 121 QQALRRLMELYS----------------SVTRFILIA--NYPSKIIDPIQSRCAF-FRFQ 161

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
               +D+   ++  A+  G+   +EA   I   S G  R A  +L+      +V
Sbjct: 162 PLSKQDVIERLRYIAENEGVDYEEEALDAIYEISEGDMRKAINVLQAASYLGKV 215


>gi|302877148|ref|YP_003845781.1| Sigma 54 interacting domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|307687843|ref|ZP_07630289.1| Sigma 54 interacting domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|302580005|gb|ADL54017.1| Sigma 54 interacting domain protein [Clostridium cellulovorans
           743B]
          Length = 630

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 65/296 (21%), Positives = 106/296 (35%), Gaps = 59/296 (19%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           D E L ++++S++   +S+LRP++ +E  GQ  A   L      +K       +++  GP
Sbjct: 150 DLETLDTKSLSKD--VLSILRPQSFDEIVGQERAIKAL-----ISKIATPYPQNIILYGP 202

Query: 63  PGLGKTTLAQVVARELG----------------------VNFRSTSGPVIAKA------- 93
           PG+GKTT A++   E                         + R  + P++          
Sbjct: 203 PGVGKTTAARLALEECKKLKFTPFEEDSKFIEVDGTTLRWDPREITNPLLGSVHDPIYQG 262

Query: 94  --GDLAA---------LLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL-------- 134
              DLA          L+T+     VLFIDEI  L   ++  L   +ED ++        
Sbjct: 263 SRRDLAETGIPEPKPGLVTDAHGG-VLFIDEIGELDQTLQNKLLKVLEDKRVEFSSSYYD 321

Query: 135 --DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
             D  V         K   + F LI ATTR     +P        +         ++ IV
Sbjct: 322 PDDDTVPAYIKYLFDKGAPADFVLIGATTRSPGEMSPALRSRCTAVYFEPLNKAHIENIV 381

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  A+   + + D    E+  R     R A  +L      A   +      EI   
Sbjct: 382 ENAAERLKVTLDD-GVAELISRYTIEGRKAVNILADAYGNALYNNDDKEEVEITLE 436


>gi|169839550|ref|ZP_02872738.1| Holliday junction DNA helicase B [candidate division TM7
           single-cell isolate TM7a]
          Length = 65

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 42/65 (64%), Positives = 54/65 (83%)

Query: 39  NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAA 98
            + +FI+AAK R E+LDH+L  GPPGLGKTTLA V+A E+GVN + T+GPV+ KAGDLAA
Sbjct: 1   KMNIFIKAAKIRNESLDHILLYGPPGLGKTTLAGVIATEMGVNLKVTTGPVLEKAGDLAA 60

Query: 99  LLTNL 103
           +LT+L
Sbjct: 61  ILTSL 65


>gi|288931716|ref|YP_003435776.1| Replication factor C [Ferroglobus placidus DSM 10642]
 gi|288893964|gb|ADC65501.1| Replication factor C [Ferroglobus placidus DSM 10642]
          Length = 321

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 85/227 (37%), Gaps = 37/227 (16%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           + +  +   RP+TL+E  GQ E    LK +++      + + H+LF GPPG GKT  A  
Sbjct: 2   ETEIWVEKYRPKTLDEVVGQDEIIQRLKSYVK-----QKNIPHLLFAGPPGTGKTATAIA 56

Query: 74  VAR------------ELGVNFRSTSGPVIAKAGDLAALLT-NLEDRDVLFIDEIHRLSII 120
           +AR            E+  +       V  K  + A           ++F+DE   L+  
Sbjct: 57  LARDLFGEVWRENFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD 116

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            +  L   ME +                        I +   V  +  P+Q R  +  + 
Sbjct: 117 AQAALRRTMEMYS------------------KVCRFILSCNYVSRIIEPIQSRCAV-FKF 157

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
                E +K  ++  A+  GL + DEA   +   S G  R A   L+
Sbjct: 158 KPVPKEAMKKRLKEIAENEGLEIDDEALEVLIYISGGDFRKAINALQ 204


>gi|256810841|ref|YP_003128210.1| AAA ATPase central domain protein [Methanocaldococcus fervens AG86]
 gi|256794041|gb|ACV24710.1| AAA ATPase central domain protein [Methanocaldococcus fervens AG86]
          Length = 371

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 55/246 (22%), Positives = 98/246 (39%), Gaps = 17/246 (6%)

Query: 26  TLEEFTGQVEACSNLKV---FIEAAKARAE-ALDHVLFVGPPGLGKTTLAQVVARELGVN 81
              E  GQ EA    ++   ++E  K   E A  +VLF GPPG GKT +A+ +A E   +
Sbjct: 122 KFSEIIGQEEAKKKCRIIMKYLENPKLFGEWAPKNVLFYGPPGTGKTLMARALATETNSS 181

Query: 82  FRSTSGPVI--AKAGDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAMEDFQ 133
           F     P +     GD + ++  L  R       ++FIDE+  + +  E           
Sbjct: 182 FILVKAPELIGEHVGDASKMIRELYQRASESAPCIVFIDELDAIGLSREYQSLRGDVSEV 241

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           ++ ++ E    +  +        IAAT    +L   ++ RF   I       E+   I++
Sbjct: 242 VNALLTELDGIKENEG----VVTIAATNNPAMLDPAIRSRFEEEIEFKLPNDEERLKIME 297

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPR-IAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
             AK   + V       +      + R I  + L+     A +     +++E  + AL +
Sbjct: 298 LYAKKMPIPVKANLKEFVEKTKGFSGRDIKEKFLKPALHKAILEDRDYVSKEDLEWALKK 357

Query: 253 LAIDKM 258
           +  D+ 
Sbjct: 358 ILKDRR 363


>gi|295399413|ref|ZP_06809395.1| Sigma 54 interacting domain protein [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294978879|gb|EFG54475.1| Sigma 54 interacting domain protein [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 556

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 61/296 (20%), Positives = 105/296 (35%), Gaps = 57/296 (19%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M++   L R++S  +     +RP++ ++  GQ +    LK     A        HV+  G
Sbjct: 44  MEQLRKL-RSISLTEPLAEKVRPKSFDDIVGQEDGIKALK-----AALCGPNPQHVIIYG 97

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSG----------------------PVIAKAGD---- 95
           PPG+GKT  A++V  E   N  S                         P+I    D    
Sbjct: 98  PPGVGKTAAARLVLEEAKKNPLSPFKQNAAFVELDATTARFDERGIADPLIGSVHDPIYQ 157

Query: 96  -------------LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL----DLMV 138
                            +TN     +LFIDEI  L  I    L   +ED ++        
Sbjct: 158 GAGAMGQAGIPQPKQGAVTNAHGG-ILFIDEIGELHPIQMNKLLKVLEDRKVFFESAYYS 216

Query: 139 GEGPSARSVKINL------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            E     S   ++      + F L+ ATTR      P      + +     + +++  I 
Sbjct: 217 KENSQIPSHIHDIFQNGLPADFRLVGATTRTPNEIPPAIRSRCLEVFFRELDQDEIALIA 276

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           ++ A    L V++     +A  +R   R A  +++     A   + +TI  +  + 
Sbjct: 277 KKAADKIRLKVSESGIRILAAYARN-GREAVNIMQIAAGIAISENRETILEKDIEW 331


>gi|308174519|ref|YP_003921224.1| LonB ATP-dependent protease [Bacillus amyloliquefaciens DSM 7]
 gi|307607383|emb|CBI43754.1| LonB ATP-dependent protease [Bacillus amyloliquefaciens DSM 7]
 gi|328554438|gb|AEB24930.1| LonB ATP-dependent protease [Bacillus amyloliquefaciens TA208]
 gi|328912842|gb|AEB64438.1| LonB ATP-dependent protease [Bacillus amyloliquefaciens LL3]
          Length = 552

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 63/296 (21%), Positives = 108/296 (36%), Gaps = 57/296 (19%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M++   + R +S  +     +RP++ ++  GQ +    LK     A        HV+  G
Sbjct: 44  MEQLRKM-RAISLSEPLSEKVRPKSFQDIVGQEDGIKALK-----AALCGPNPQHVIIYG 97

Query: 62  PPGLGKTTLAQVV---ARELGVNFRSTSG-------------------PVIAKAGD---- 95
           PPG+GKT  A++V   A++   +                         P+I    D    
Sbjct: 98  PPGVGKTAAARLVLEEAKKHKQSPFQKQAVFVELDATTARFDERGIADPLIGSVHDPIYQ 157

Query: 96  -------------LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL----MV 138
                            +T+     VLFIDEI  L  I    +   +ED ++ L      
Sbjct: 158 GAGAMGQAGIPQPKQGAVTHAHGG-VLFIDEIGELHPIQMNKMLKVLEDRKVFLDSAYYS 216

Query: 139 GEGPSARSVKINL------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            E     +   ++      + F LI ATTR+     P      + +     E ++LKT+ 
Sbjct: 217 EENTQIPNHIHDIFQNGLPADFRLIGATTRMPNEIPPAIRSRCLEVFFRELEKDELKTVA 276

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           ++ A      ++DEA   +   +R   R A  +++     A     K IT E  + 
Sbjct: 277 KKAADKIQKEISDEALGVLTAYTRN-GREAVNMIQIAAGMAVTEDRKEITTEDIEW 331


>gi|312110028|ref|YP_003988344.1| Sigma 54 interacting domain protein [Geobacillus sp. Y4.1MC1]
 gi|311215129|gb|ADP73733.1| Sigma 54 interacting domain protein [Geobacillus sp. Y4.1MC1]
          Length = 586

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 61/296 (20%), Positives = 105/296 (35%), Gaps = 57/296 (19%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M++   L R++S  +     +RP++ ++  GQ +    LK     A        HV+  G
Sbjct: 74  MEQLRKL-RSISLTEPLAEKVRPKSFDDIVGQEDGIKALK-----AALCGPNPQHVIIYG 127

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSG----------------------PVIAKAGD---- 95
           PPG+GKT  A++V  E   N  S                         P+I    D    
Sbjct: 128 PPGVGKTAAARLVLEEAKKNPLSPFKQNAAFVELDATTARFDERGIADPLIGSVHDPIYQ 187

Query: 96  -------------LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL----DLMV 138
                            +TN     +LFIDEI  L  I    L   +ED ++        
Sbjct: 188 GAGAMGQAGIPQPKQGAVTNAHGG-ILFIDEIGELHPIQMNKLLKVLEDRKVFFESAYYS 246

Query: 139 GEGPSARSVKINL------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            E     S   ++      + F L+ ATTR      P      + +     + +++  I 
Sbjct: 247 KENSQIPSHIHDIFQNGLPADFRLVGATTRTPNEIPPAIRSRCLEVFFRELDQDEIALIA 306

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           ++ A    L V++     +A  +R   R A  +++     A   + +TI  +  + 
Sbjct: 307 KKAADKIRLKVSESGIRILAAYARN-GREAVNIMQIAAGIAISENRETILEKDIEW 361


>gi|147918695|ref|YP_687582.1| replication factor C small subunit [uncultured methanogenic
           archaeon RC-I]
 gi|121687726|sp|Q0W037|RFCS_UNCMA RecName: Full=Replication factor C small subunit; Short=RFC small
           subunit; AltName: Full=Clamp loader small subunit
 gi|110622978|emb|CAJ38256.1| replication factor C (clamp loader), small subunit [uncultured
           methanogenic archaeon RC-I]
          Length = 322

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 52/245 (21%), Positives = 88/245 (35%), Gaps = 37/245 (15%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +++++      RPR LE+  G  +    L  ++++       L H+LF GPPG+GKT  A
Sbjct: 1   MAEDEIWTEKYRPRRLEDVIGHQQITRRLISYVKSG-----NLPHLLFSGPPGVGKTACA 55

Query: 72  QVVARE-----LGVNFRSTSGPVIAKAGDLAALLTNLED--------RDVLFIDEIHRLS 118
             +ARE        NF   +         +   + N             ++F+DE   L+
Sbjct: 56  VALARELYGETWHSNFIELNASDERGIDVVRNNIKNFARTAPLGEAKFKIIFLDEADALT 115

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
              +  L   ME +                        I +      +  P+Q R  +  
Sbjct: 116 SDAQSALRRTMERYAAT------------------CRFIISCNYSSKIIEPIQSRCAV-Y 156

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           R       D+ T + R AK  GL +  +    +   +RG  R A   L+     A+   A
Sbjct: 157 RFGPLNATDITTGITRIAKNEGLKIEKDGMDALIYVARGDMRRAINALQSAATIAKDITA 216

Query: 239 KTITR 243
             I +
Sbjct: 217 DVIYQ 221


>gi|50294179|ref|XP_449501.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49528815|emb|CAG62477.1| unnamed protein product [Candida glabrata]
          Length = 331

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 38/172 (22%), Positives = 64/172 (37%), Gaps = 27/172 (15%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MM  +             +   RP+TL++  GQ E    +K F++  K     L H+LF 
Sbjct: 1   MMTEDR-------DNLPWVEKYRPQTLDDVYGQREVVGTVKKFVQEGK-----LPHLLFY 48

Query: 61  GPPGLGKTTLAQVVAR------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-D 107
           GPPG GKT+    +A+            EL  +       V  +  D A+          
Sbjct: 49  GPPGTGKTSTIVALAKDIYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFK 108

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLD--LMVGEGPSARSVKINLSRFTLI 157
           ++ +DE   ++   +  L   +E +  +    +    S +     LSR T  
Sbjct: 109 LIILDEADAMTNAAQNALRRIIEKYTKNTRFCILANYSHKITPALLSRCTRF 160


>gi|156938086|ref|YP_001435882.1| replication factor C small subunit [Ignicoccus hospitalis KIN4/I]
 gi|156567070|gb|ABU82475.1| replication factor C small subunit [Ignicoccus hospitalis KIN4/I]
          Length = 329

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 63/301 (20%), Positives = 107/301 (35%), Gaps = 59/301 (19%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           +  +E       RP++L+E   Q +    LK F+E      + + H+LF GPPG GKTT 
Sbjct: 2   SAPEELLWAEKYRPKSLDEIVDQEDIVRRLKKFVE-----EKNVPHMLFAGPPGTGKTTA 56

Query: 71  AQVVAR------------ELGVNFRSTSGPVIAKAGDLAALLTNLE-DRDVLFIDEIHRL 117
           A  +A             EL  +       +  K  + A   T       ++ +DE   +
Sbjct: 57  ALALAHDLYGEKYRQYILELNASDERGIDVIRTKVKEFARSRTPPTVPFKLVILDEADNM 116

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           +   ++ L   ME +             +  I L+ F           +  P+Q R  + 
Sbjct: 117 TADAQQALRRLMEMYSTT----------TRFILLANF--------PSKIIEPVQSRC-VY 157

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            R      + +   ++   +  G+   ++A  EI   S G  R A  +L+      +V  
Sbjct: 158 FRFRPLPKDKVIERLKYICQKEGVQCEEDALEEIYNISEGDMRKAINILQAAAALGKVTK 217

Query: 238 A----------KTITREIADAALL----------RLAIDKMGFDQLDLRYLTMIARNFGG 277
                       +  +EI + AL           R  + + G   LD+  L M  R   G
Sbjct: 218 DAVYKAIGYVHPSKIKEILEYALNGDFTKSAKLLRDVMIEYGLSGLDV--LKMFQRELMG 275

Query: 278 G 278
           G
Sbjct: 276 G 276


>gi|31544730|ref|NP_853308.1| replication-associated recombination protein A [Mycoplasma
           gallisepticum str. R(low)]
 gi|31541576|gb|AAP56876.1| replication-associated recombination protein A (rarA) [Mycoplasma
           gallisepticum str. R(low)]
 gi|284930797|gb|ADC30736.1| replication-associated recombination protein A (rarA) [Mycoplasma
           gallisepticum str. R(high)]
          Length = 413

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 59/318 (18%), Positives = 108/318 (33%), Gaps = 55/318 (17%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFR 83
           P ++E+  GQ        +       R      +L  G PG+GKTTL  ++  E+ +   
Sbjct: 14  PESVEDIIGQKHLLHEYGILRRMIDLR--KPYSLLVTGEPGIGKTTLCNILISEMNLPSF 71

Query: 84  STSGPVIAKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAME--DFQLDLMVG 139
           S +    +   +L   ++  ++  + V+ IDEIHRL    +++L   ++   F L  +  
Sbjct: 72  SFNSASDS-LQELKQFISKAKELNQCVIIIDEIHRLHRDKQDLLIKGLDAKSFILFGITT 130

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199
           E P         SR   I       +                    E  K IVQ   +  
Sbjct: 131 ENPYFTINPAIRSRVHTIELVNPTSIEL-----------------FEGYKKIVQ---QKN 170

Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259
            + ++D+   +IA    G  R    ++  +  +           EI +  L  +  + + 
Sbjct: 171 IVTISDDILYKIANMVNGDLRKGINIIELLDIY-------YKNVEITEEILKNVIDNNVT 223

Query: 260 FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ----GFIQRTPR 315
                             G    +  SA     R +  D    Y+ Q       I  +  
Sbjct: 224 LASY--------------GDTFHDLKSALQKSIRGSDPDAAVYYLAQLIATKDLITIS-- 267

Query: 316 GRLLMPIAWQHLGIDIPH 333
            R L+  A++ +G+  P 
Sbjct: 268 -RRLIACAYEDIGLANPD 284


>gi|284931299|gb|ADC31237.1| replication-associated recombination protein A (rarA) [Mycoplasma
           gallisepticum str. F]
          Length = 413

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 60/318 (18%), Positives = 108/318 (33%), Gaps = 55/318 (17%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFR 83
           P ++E+  GQ        +       R      +L  G PG+GKTTL  ++  E+ +   
Sbjct: 14  PESVEDIIGQKHLLHEYGILRRMIDLRKPY--SLLVTGEPGIGKTTLCNILISEMNLPSF 71

Query: 84  STSGPVIAKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAME--DFQLDLMVG 139
           S +    +   +L   ++  +D  + V+ IDEIHRL    +++L   ++   F L  +  
Sbjct: 72  SFNSASDS-LQELKQFISKAKDLNQCVIIIDEIHRLHRDKQDLLIKGLDAKSFILFGITT 130

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199
           E P         SR   I       +                    E  K IVQ   +  
Sbjct: 131 ENPYFTINPAIRSRVHTIELVNPTSIEL-----------------FEGYKKIVQ---QKN 170

Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259
            + ++D+   +IA    G  R    ++  +  +           EI +  L  +  + + 
Sbjct: 171 IVTISDDILYKIANMVNGDLRKGINIIELLDIY-------YKNVEITEEILKNVIDNNVT 223

Query: 260 FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ----GFIQRTPR 315
                             G    +  SA     R +  D    Y+ Q       I  +  
Sbjct: 224 LVSY--------------GDTFHDLKSALQKSIRGSDPDAAVYYLAQLIATKDLITIS-- 267

Query: 316 GRLLMPIAWQHLGIDIPH 333
            R L+  A++ +G+  P 
Sbjct: 268 -RRLIACAYEDIGLANPD 284


>gi|239637703|ref|ZP_04678673.1| DNA polymerase III subunit gamma/tau [Staphylococcus warneri
           L37603]
 gi|239596728|gb|EEQ79255.1| DNA polymerase III subunit gamma/tau [Staphylococcus warneri
           L37603]
          Length = 566

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 86/234 (36%), Gaps = 21/234 (8%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RP++ ++  GQ      L+  I   K         +F GP G GKT++A+V A+
Sbjct: 5   ALYRMYRPQSFDDVVGQEHVTKTLRNAISKGKQSHAY----IFSGPRGTGKTSIAKVFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +     +   P    A  +   +T   + DV+ ID      +  +  I +++ Y   E 
Sbjct: 61  AINCTNSTDGEPCNECA--ICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSES 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++   +    I ATT    +   +  R         
Sbjct: 119 EYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISR-AQRFDFKA 177

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
             +E +   ++  A    L   DEA   IA  S G  R A  ++ +   F +  
Sbjct: 178 ISLEQIVERLKYVADSQSLPYDDEALEFIAKASEGGMRDALSIMDQAIAFGDEH 231


>gi|237755842|ref|ZP_04584440.1| DNA polymerase III subunit tau [Sulfurihydrogenibium yellowstonense
           SS-5]
 gi|237692007|gb|EEP61017.1| DNA polymerase III subunit tau [Sulfurihydrogenibium yellowstonense
           SS-5]
          Length = 501

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 47/259 (18%), Positives = 83/259 (32%), Gaps = 53/259 (20%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +A     RP++ +E  GQ      LK  ++  +         +F GP G+GKTT+A+++A
Sbjct: 4   EAFSRKYRPKSFKEVIGQEHVVKTLKNAVKLDRVSHAY----IFSGPRGVGKTTIARILA 59

Query: 76  RELGVN------------------------FRSTSGPVIAKAGDLAALLTNLEDRDV--- 108
           + L                                        D+  +  N+  + +   
Sbjct: 60  KVLNCKNPVDYEPCNQCENCIEIDKGSFPDMYEIDAASNRGIDDIRMIRDNVGYQPIKGK 119

Query: 109 ---LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
                IDE H L+      L   +E+                     R   I ATT +  
Sbjct: 120 YKVYIIDEAHMLTKEAFNALLKTLEE------------------PPPRNIFILATTELYK 161

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           +   ++ R    I       E +K  + R      +   ++A   +A    G  R +  L
Sbjct: 162 IPETIKSRCQTFIFKPP-TKEQIKNYLLRILNNEKIPYEEDAVELLAQELEGGMRDSASL 220

Query: 226 LRRVRDFAEVAHAKTITRE 244
           L +   +AE    +    E
Sbjct: 221 LDQAVTYAEGKLTRKDVEE 239


>gi|73669094|ref|YP_305109.1| replication factor C small subunit [Methanosarcina barkeri str.
           Fusaro]
 gi|110287811|sp|Q46C63|RFCS_METBF RecName: Full=Replication factor C small subunit; Short=RFC small
           subunit; AltName: Full=Clamp loader small subunit
 gi|72396256|gb|AAZ70529.1| replication factor C small subunit [Methanosarcina barkeri str.
           Fusaro]
          Length = 334

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 51/237 (21%), Positives = 89/237 (37%), Gaps = 38/237 (16%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           +  +  +E+  I   RP  L++  GQ E    LK ++       + L H+LF GPPG+GK
Sbjct: 1   MEDSTIKEEIWIEKYRPVRLDQVAGQEETIERLKSYV-----ATKNLPHLLFSGPPGVGK 55

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAAL---LTNLE-----------DRDVLFIDE 113
           T  A  +ARE+              A D   +    T ++           +  ++F+DE
Sbjct: 56  TASAVSIAREIFGEDLWRENFTELNASDERGIDVVRTKIKNFAKTAPMGGAEFKIIFLDE 115

Query: 114 IHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
              L+   +  L   ME F                   +    I +      +  P+Q R
Sbjct: 116 ADALTSDAQSALRRTMERFS------------------NNCRFILSCNYSSRIIEPIQSR 157

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
             +  R      E ++  ++  AK   L++T++    +   S+G  R A   L+   
Sbjct: 158 CAV-FRFRRLSDEAIRKRLEYIAKDQVLSITEDGYEALVYVSQGDMRKAVNSLQAAA 213


>gi|330954583|gb|EGH54843.1| recombination factor protein RarA [Pseudomonas syringae Cit 7]
          Length = 92

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 4/94 (4%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L SR    +    + LR   L+E+ GQ    ++ K   EA +    AL  ++F GPPG+G
Sbjct: 3   LFSREPIAQ-PLAARLRATNLDEYVGQEHVLAHGKPLREALEQ--GALHSMIFWGPPGVG 59

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALL 100
           KTTLA+++A+    +F + S  V+A   ++   +
Sbjct: 60  KTTLAKLLAKVSDAHFETVSA-VLAGVKEIRQAV 92


>gi|330684669|gb|EGG96371.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
           epidermidis VCU121]
          Length = 566

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 86/234 (36%), Gaps = 21/234 (8%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RP++ ++  GQ      L+  I   K         +F GP G GKT++A+V A+
Sbjct: 5   ALYRMYRPQSFDDVVGQEHVTKTLRNAISKGKQSHAY----IFSGPRGTGKTSIAKVFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +     +   P    A  +   +T   + DV+ ID      +  +  I +++ Y   E 
Sbjct: 61  AINCTNSTDGEPCNECA--ICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSES 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++   +    I ATT    +   +  R         
Sbjct: 119 EYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISR-AQRFDFKA 177

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
             +E +   ++  A    L   DEA   IA  S G  R A  ++ +   F +  
Sbjct: 178 ISLEQIVERLKYVADSQSLPYDDEALEFIAKASEGGMRDALSIMDQAIAFGDEH 231


>gi|320100774|ref|YP_004176366.1| replication factor C large subunit [Desulfurococcus mucosus DSM
           2162]
 gi|319753126|gb|ADV64884.1| replication factor C large subunit [Desulfurococcus mucosus DSM
           2162]
          Length = 425

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 83/221 (37%), Gaps = 23/221 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RPRTLEEF  Q EA   L  ++E+ +         L  GPPG GKT+L + VAR
Sbjct: 7   PWVIKYRPRTLEEFEDQEEAKEKLIAWLESWEKGVPGKKAALLHGPPGCGKTSLVEAVAR 66

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED-------RDVLFIDEIHRLSIIVEEILYPAM 129
             G      +     +  D+  ++            R ++ +DE+        + + P  
Sbjct: 67  SKGYQLFEMNASDARRKEDIDRIVKLASRSGALTGSRKIILLDEV--------DGMDPRA 118

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           +   ++ +V        +K   +   +  A         PL++   +           + 
Sbjct: 119 DAGGIEALV------EVIKATANPIIM-TANNPYSQALRPLRELSEVIGFKRL-SESVVV 170

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
            ++++      L   DEA  EIA RS G  R A   L  + 
Sbjct: 171 KVLKKICGAEKLFCEDEALREIARRSEGDLRSAINDLEALA 211


>gi|260888719|ref|ZP_05899982.1| ATP-dependent protease, Lon family [Selenomonas sputigena ATCC
           35185]
 gi|330839879|ref|YP_004414459.1| anti-sigma H sporulation factor, LonB [Selenomonas sputigena ATCC
           35185]
 gi|260861472|gb|EEX75972.1| ATP-dependent protease, Lon family [Selenomonas sputigena ATCC
           35185]
 gi|329747643|gb|AEC01000.1| anti-sigma H sporulation factor, LonB [Selenomonas sputigena ATCC
           35185]
          Length = 684

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 63/265 (23%), Positives = 97/265 (36%), Gaps = 57/265 (21%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           + LLRP+TLEE  GQ  A   L     A+K  +    H+L  GPPG+GKTT A++V   +
Sbjct: 172 MELLRPKTLEEVVGQERAVKAL-----ASKLASPYPQHLLLYGPPGVGKTTAARIVLEAV 226

Query: 79  G----------------------VNFRSTSGPVIAKA---------GDLA---------A 98
                                   + R  + P++             DLA          
Sbjct: 227 KKEAHSPFAENAPFVETDGTTLRWDSRDMTNPLLGSVHDPIYQGARRDLADGGIPEPKPG 286

Query: 99  LLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM-----VGEGPSARSVKINL-- 151
           ++T      +LFIDEI  +  +++  L   +ED +           +      ++     
Sbjct: 287 MVTEAHGG-ILFIDEIGEMDEMLQNKLLKVLEDKRAFFESAYYDHTDEKVPPYIRKLFEE 345

Query: 152 ---SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAA 208
              + F LI ATTR     NP        I       + ++ IVQ  AK   + V +E  
Sbjct: 346 GAPADFVLIGATTRDASHVNPALRSRCAEIYFEPLTPKHIEEIVQNAAKKLKVEVAEEVV 405

Query: 209 CEIAMRSRGTPRIAGRLLRRVRDFA 233
             I+  +    R A  +L      A
Sbjct: 406 RLISEYTTE-GRKAINILADAYSLA 429


>gi|239827923|ref|YP_002950547.1| ATP-dependent protease LonB [Geobacillus sp. WCH70]
 gi|239808216|gb|ACS25281.1| ATP-dependent protease LonB [Geobacillus sp. WCH70]
          Length = 556

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 61/288 (21%), Positives = 101/288 (35%), Gaps = 56/288 (19%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           R++S  +     +RP++ E+  GQ +    LK     A        HV+  GPPG+GKT 
Sbjct: 51  RSISLTEPLAEKVRPKSFEDIVGQEDGIKALK-----AALCGPNPQHVIIYGPPGVGKTA 105

Query: 70  LAQVVARELGVNFRSTSG----------------------PVIAKAGD------------ 95
            A++V  E   N  S                         P+I    D            
Sbjct: 106 AARLVLEEAKKNPLSPFKKNAVFVELDATTARFDERGIADPLIGSVHDPIYQGAGAMGQA 165

Query: 96  -----LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL----DLMVGEGPSARS 146
                    +T      VLFIDEI  L  I    L   +ED ++         E P   S
Sbjct: 166 GIPQPKQGAVTTAHGG-VLFIDEIGELHPIQMNKLLKVLEDRKVFFESAYYSKENPQIPS 224

Query: 147 VKINL------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
              ++      + F L+ ATTR      P      + +     + +++  I ++ A+   
Sbjct: 225 HIHDIFQNGLPADFRLVGATTRTPNEIPPAIRSRCLEVFFRELDQDEIALIAKKAAEKIR 284

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           L V++     +A  +R   R A  +++     A     +TI  +  + 
Sbjct: 285 LKVSESGIRILASYARN-GREAVNIMQIAAGIAISEKRETILDKDIEW 331


>gi|327401750|ref|YP_004342589.1| Replication factor C small subunit [Archaeoglobus veneficus SNP6]
 gi|327317258|gb|AEA47874.1| Replication factor C small subunit [Archaeoglobus veneficus SNP6]
          Length = 322

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 50/239 (20%), Positives = 86/239 (35%), Gaps = 37/239 (15%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           + +  +   RPRTL+E  GQ E    L  ++E      + + H+LF GPPG GKT  A  
Sbjct: 4   EAEIWVEKYRPRTLKEVVGQEEVIQRLMGYVE-----RKNIPHLLFAGPPGTGKTASAIA 58

Query: 74  VAR------------ELGVNFRSTSGPVIAKAGDLAALLT-NLEDRDVLFIDEIHRLSII 120
           +AR            E+  +       V  K  + A           ++F+DE   L+  
Sbjct: 59  LARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGDAPFKIIFLDEADALTPD 118

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            +  L   ME +                        I +   V  +  P+Q R  +  + 
Sbjct: 119 AQAALRRTMEMYSKI------------------CRFILSCNYVSRIIEPIQSRCAV-FKF 159

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
                E ++  +    +  G+ +T++    +   S G  R A   L+      +V  A+
Sbjct: 160 RPVPPEAMRKRLLEICENEGVKITEDGLEALIYVSNGDFRKAINALQGAAALGKVVDAE 218


>gi|289191993|ref|YP_003457934.1| AAA ATPase central domain protein [Methanocaldococcus sp. FS406-22]
 gi|288938443|gb|ADC69198.1| AAA ATPase central domain protein [Methanocaldococcus sp. FS406-22]
          Length = 371

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 55/246 (22%), Positives = 98/246 (39%), Gaps = 17/246 (6%)

Query: 26  TLEEFTGQVEACSNLKV---FIEAAKARAE-ALDHVLFVGPPGLGKTTLAQVVARELGVN 81
              E  GQ EA    ++   ++E  K   E A  +VLF GPPG GKT +A+ +A E   +
Sbjct: 122 KFSEIIGQEEAKKKCRIIMKYLENPKLFGEWAPKNVLFYGPPGTGKTLMARALATETNSS 181

Query: 82  FRSTSGPVI--AKAGDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAMEDFQ 133
           F     P +     GD + ++  L  R       ++FIDE+  + +  E           
Sbjct: 182 FILVKAPELIGEHVGDASKMIRELYQRASENAPCIVFIDELDAIGLSREYQSLRGDVSEV 241

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           ++ ++ E    +  +        IAAT    +L   ++ RF   I       E+   I++
Sbjct: 242 VNALLTELDGIKENEG----VVTIAATNNPAMLDPAIRSRFEEEIEFKLPNDEERLKIME 297

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPR-IAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
             AK   + V       +      + R I  + L+     A +     I++E  + AL +
Sbjct: 298 LYAKKMPIPVKANLKEFVEKTKGFSGRDIKEKFLKPALHKAILEDRDYISKEDLEWALKK 357

Query: 253 LAIDKM 258
           +  ++ 
Sbjct: 358 IVSNRR 363


>gi|20089555|ref|NP_615630.1| replication factor C small subunit [Methanosarcina acetivorans C2A]
 gi|42559497|sp|Q8TSX5|RFCS_METAC RecName: Full=Replication factor C small subunit; Short=RFC small
           subunit; AltName: Full=Clamp loader small subunit
 gi|19914469|gb|AAM04110.1| replication factor C, small subunit [Methanosarcina acetivorans
           C2A]
          Length = 338

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 52/238 (21%), Positives = 85/238 (35%), Gaps = 38/238 (15%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L+  +  +E+  I   RP  L +  GQ E    LK ++       + L H+LF GPPG+G
Sbjct: 4   LMEDSKIKEEIWIEKYRPVRLNQVAGQDETIERLKSYV-----ATKNLPHLLFSGPPGVG 58

Query: 67  KTTLAQVVARE------LGVNFRSTSGPVIAKAGDLAALLTNLED--------RDVLFID 112
           KT  A  +ARE         NF   +         +   + N             ++F+D
Sbjct: 59  KTASAVSIAREIFGEDLWRENFTELNASDERGIDIVRNKIKNFAKTAPIGGAPFKIIFLD 118

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E   L+   +  L   ME F                   S    I +      +  P+Q 
Sbjct: 119 EADALTADAQSALRRTMERFS------------------SNCRFILSCNYSSKIIEPIQS 160

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
           R  +         E +K  ++  A   GL++T+     +   ++G  R A   L+   
Sbjct: 161 RCAVYRFRRL-SDEAIKERLEYIAGDQGLSITEGGYEALIYVAQGDMRKAVNSLQAAA 217


>gi|154686957|ref|YP_001422118.1| hypothetical protein RBAM_025270 [Bacillus amyloliquefaciens FZB42]
 gi|154352808|gb|ABS74887.1| LonB [Bacillus amyloliquefaciens FZB42]
          Length = 552

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 62/296 (20%), Positives = 107/296 (36%), Gaps = 57/296 (19%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M++   + R +S  +     +RP++ ++  GQ +    LK     A        HV+  G
Sbjct: 44  MEQLRKM-RAISLSEPLSEKVRPKSFQDIVGQEDGIKALK-----AALCGPNPQHVIIYG 97

Query: 62  PPGLGKTTLAQVV---ARELGVNFRSTSG-------------------PVIAKAGD---- 95
           PPG+GKT  A++V   A++   +                         P+I    D    
Sbjct: 98  PPGVGKTAAARLVLEEAKKHKQSPFQKQAVFVELDATTARFDERGIADPLIGSVHDPIYQ 157

Query: 96  -------------LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL----MV 138
                            +T+     VLFIDEI  L  I    +   +ED ++ L      
Sbjct: 158 GAGAMGQAGIPQPKQGAVTHAHGG-VLFIDEIGELHPIQMNKMLKVLEDRKVFLDSAYYS 216

Query: 139 GEGPSARSVKINL------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            E     +   ++      + F LI ATTR+     P      + +     E ++LK + 
Sbjct: 217 EENTQIPNHIHDIFQNGLPADFRLIGATTRMPNEIPPAIRSRCLEVFFRELEKDELKIVA 276

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           ++ A      ++DEA   +   +R   R A  +++     A     K IT E  + 
Sbjct: 277 KKAADKIQKEISDEALSVLTTYTRN-GREAVNMIQIAAGMAVTEDRKEITTEDIEW 331


>gi|295692957|ref|YP_003601567.1| atpase, aaa family [Lactobacillus crispatus ST1]
 gi|295031063|emb|CBL50542.1| ATPase, AAA family [Lactobacillus crispatus ST1]
          Length = 98

 Score = 81.7 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 3/91 (3%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP+TL +  GQ E     K      K        +L  GPPG GKT+LAQ++A+
Sbjct: 6   PIAEQMRPQTLADMVGQSELLGPGKALRNIIKQHVNI--SLLLWGPPGTGKTSLAQIIAK 63

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD 107
           E    F S +  +  KA  L  ++   + + 
Sbjct: 64  ENDYPFASFNASIDNKA-QLNNIINAYKYQT 93


>gi|256811408|ref|YP_003128777.1| AAA ATPase central domain protein [Methanocaldococcus fervens AG86]
 gi|256794608|gb|ACV25277.1| AAA ATPase central domain protein [Methanocaldococcus fervens AG86]
          Length = 488

 Score = 81.7 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 45/209 (21%), Positives = 86/209 (41%), Gaps = 22/209 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           + +   RP++L+E  G  +    LK +IE +  R E    +L VGPPG GKTTLA  +A 
Sbjct: 3   SWVEKYRPKSLKEVAGHDKVKERLKTWIE-SYLRGENPKPILLVGPPGCGKTTLAYALAN 61

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVE----EIL 125
           + G      +      A  +  ++ +          + ++ +DE+  +S   +      L
Sbjct: 62  DYGFEVIELNASDKRNASSIKKVVGHAATSSSVFGKKFLIVLDEVDGISGKEDAGGVSEL 121

Query: 126 YPAMEDFQLDLMVGEG-PSARSVKINLSRFTLIAA----TTRVGLLTNPLQDRFGIPIRL 180
              ++  +  +++      A S++  L    +I      T  V  +   + ++ G+ +  
Sbjct: 122 IKVIKKAKNPIILTANDAYATSIRNLLPYVEVIQLNPVHTNSVYKVLKKIAEKEGLNV-- 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAAC 209
              + + LK I Q  A     A+ D  A 
Sbjct: 180 ---DDKILKMIAQHSAGDLRSAINDLEAL 205


>gi|57012999|sp|Q5UZE5|RFCS_HALMA RecName: Full=Replication factor C small subunit; Short=RFC small
           subunit; AltName: Full=Clamp loader small subunit
          Length = 325

 Score = 81.7 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 48/241 (19%), Positives = 87/241 (36%), Gaps = 38/241 (15%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M + E        +E+  I   RP+TL++  G       LK ++    +R + L H+LF 
Sbjct: 1   MSEAES--ESRAGREEVWIEKYRPQTLDDVMGHENIVGRLKSYV----SRND-LSHMLFS 53

Query: 61  GPPGLGKTTLAQVVARE-----LGVNFRSTSGPVIAKAGDLAALLTNLEDRD-------V 108
           GP G GKTT A  +ARE        +F   +         +   + N            +
Sbjct: 54  GPAGTGKTTCATAIARELYGDDWREHFLELNASDERGIDVVRDRIKNFARTSFGGVEYRI 113

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +F+DE   L+   +  L   ME F                   +    I +      + +
Sbjct: 114 IFLDEADALTSDAQSALRRTMEQFS------------------NNVRFILSCNYSSQIID 155

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
           P+Q R  +  R +    + +   ++  A    + +T++    +   + G  R A   L+ 
Sbjct: 156 PIQSRCAV-FRFSPLADDAVAEEIRTIAAEEDIELTEDGLDALVYAADGDMRKAINGLQA 214

Query: 229 V 229
            
Sbjct: 215 A 215


>gi|15669688|ref|NP_248501.1| AAA ATPase family protein [Methanocaldococcus jannaschii DSM 2661]
 gi|3915816|sp|Q58889|PRS2_METJA RecName: Full=Putative 26S protease regulatory subunit homolog
           MJ1494
 gi|2826420|gb|AAB99505.1| AAA superfamily ATPase, similar to FtsH [Methanocaldococcus
           jannaschii DSM 2661]
          Length = 371

 Score = 81.7 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 55/246 (22%), Positives = 98/246 (39%), Gaps = 17/246 (6%)

Query: 26  TLEEFTGQVEACSNLKV---FIEAAKARAE-ALDHVLFVGPPGLGKTTLAQVVARELGVN 81
              E  GQ EA    ++   ++E  K   E A  +VLF GPPG GKT +A+ +A E   +
Sbjct: 122 KFSEIIGQEEAKKKCRIIMKYLENPKLFGEWAPKNVLFYGPPGTGKTLMARALATETNSS 181

Query: 82  FRSTSGPVI--AKAGDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAMEDFQ 133
           F     P +     GD + ++  L  R       ++FIDE+  + +  E           
Sbjct: 182 FILVKAPELIGEHVGDASKMIRELYQRASESAPCIVFIDELDAIGLSREYQSLRGDVSEV 241

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           ++ ++ E    +  +        IAAT    +L   ++ RF   I       E+   I++
Sbjct: 242 VNALLTELDGIKENEG----VVTIAATNNPAMLDPAIRSRFEEEIEFKLPNDEERLKIME 297

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPR-IAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
             AK   L V       +      + R I  + L+     A +     +++E  + AL +
Sbjct: 298 LYAKKMPLPVKANLKEFVEKTKGFSGRDIKEKFLKPALHRAILEDRDYVSKEDLEWALKK 357

Query: 253 LAIDKM 258
           +  ++ 
Sbjct: 358 ILGNRR 363


>gi|148700414|gb|EDL32361.1| Werner helicase interacting protein 1, isoform CRA_d [Mus musculus]
          Length = 339

 Score = 81.7 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 51/116 (43%), Gaps = 17/116 (14%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLG 66
           R + +       +RP TL+++ GQ  A      L+  +EA +     +  ++  GPPG G
Sbjct: 214 RQMLEGKPLADKMRPDTLQDYIGQSRAVGQETLLRSLLEANE-----IPSLILWGPPGCG 268

Query: 67  KTTLAQVVARELGVNFRST--SGPVIAKAGDLAALLTNLE-------DRDVLFIDE 113
           KTTLA ++A     +           AK  D+  ++   +        + +LFIDE
Sbjct: 269 KTTLAHIIANNSKKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDE 324


>gi|2127780|pir||E64486 ATP-dependent 26S proteosome regulatory subunit 8 homolog -
           Methanococcus jannaschii
          Length = 373

 Score = 81.7 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 55/246 (22%), Positives = 98/246 (39%), Gaps = 17/246 (6%)

Query: 26  TLEEFTGQVEACSNLKV---FIEAAKARAE-ALDHVLFVGPPGLGKTTLAQVVARELGVN 81
              E  GQ EA    ++   ++E  K   E A  +VLF GPPG GKT +A+ +A E   +
Sbjct: 124 KFSEIIGQEEAKKKCRIIMKYLENPKLFGEWAPKNVLFYGPPGTGKTLMARALATETNSS 183

Query: 82  FRSTSGPVI--AKAGDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAMEDFQ 133
           F     P +     GD + ++  L  R       ++FIDE+  + +  E           
Sbjct: 184 FILVKAPELIGEHVGDASKMIRELYQRASESAPCIVFIDELDAIGLSREYQSLRGDVSEV 243

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           ++ ++ E    +  +        IAAT    +L   ++ RF   I       E+   I++
Sbjct: 244 VNALLTELDGIKENEG----VVTIAATNNPAMLDPAIRSRFEEEIEFKLPNDEERLKIME 299

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPR-IAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
             AK   L V       +      + R I  + L+     A +     +++E  + AL +
Sbjct: 300 LYAKKMPLPVKANLKEFVEKTKGFSGRDIKEKFLKPALHRAILEDRDYVSKEDLEWALKK 359

Query: 253 LAIDKM 258
           +  ++ 
Sbjct: 360 ILGNRR 365


>gi|163756060|ref|ZP_02163176.1| DNA polymerase III subunit gamma/tau [Kordia algicida OT-1]
 gi|161323934|gb|EDP95267.1| DNA polymerase III subunit gamma/tau [Kordia algicida OT-1]
          Length = 587

 Score = 81.7 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 85/233 (36%), Gaps = 41/233 (17%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+T ++  GQ    + L+  IE    R+     +LF GP G+GKTT A+++A+++
Sbjct: 8   ARKYRPQTFKDVVGQQAITNTLENAIE----RSHLAQALLFCGPRGVGKTTCARILAKKI 63

Query: 79  G------------VNFRSTSGPVIAKAGDLAALLT------NLEDRDVLFIDEIHRLSII 120
                         N             D+ +L+        +    V  IDE+H LS  
Sbjct: 64  NQDGTENPDEDFAFNIFELDAASNNSVDDIRSLIEQVRIPPQVGKYKVYIIDEVHMLSQA 123

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                   +E+                         I ATT    +   +  R  I    
Sbjct: 124 AFNAFLKTLEE------------------PPKHAIFILATTEKHKIIPTILSRCQIFDFK 165

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
               ++D K  ++  A+  G+   D+A   IA ++ G  R A  +  RV  F+
Sbjct: 166 RI-GVKDAKEYLKYIAESQGVEADDDALHIIAQKADGAMRDALSIFDRVVSFS 217


>gi|291532621|emb|CBL05734.1| ATP-dependent protease, Lon family [Megamonas hypermegale ART12/1]
          Length = 471

 Score = 81.7 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 66/277 (23%), Positives = 93/277 (33%), Gaps = 63/277 (22%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           + LLRP  L E  GQ  A   LK     AK  +    H++  GPPG+GKTT A++V +E 
Sbjct: 1   MELLRPENLSEIIGQERAIKALK-----AKLSSPYPQHLILYGPPGVGKTTAARLVLQEA 55

Query: 79  GVNFRSTSG------------------------------PVIAKA-GDLA---------A 98
                +                                 P+   A  DLA          
Sbjct: 56  CTQPHTPFNADAPFVETDGTTLRYDPRGIANPLLGSVHDPIYQGARRDLADSGIPEPKPG 115

Query: 99  LLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS------ 152
           L+T+     +LFIDEI  L   ++  L   +ED +      +         N+       
Sbjct: 116 LVTDAHGG-ILFIDEIGELDDTLQNELLKVLEDKRAYF---DSAYFEPNDPNVPEYIKKL 171

Query: 153 -------RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTD 205
                   F LI ATTR     NP        I       + ++TIV   A      + D
Sbjct: 172 FTEGAPADFVLIGATTRDSYYLNPALRSRCAEIYFEPLTPKHIETIVLNAAHKLYAKLDD 231

Query: 206 EAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           E A  I+  +    R A  +L      A V     + 
Sbjct: 232 EVAQIISEYT-IEGRKAINILADAYSNALVRQENDMD 267


>gi|326799758|ref|YP_004317577.1| DNA polymerase III subunits gamma/tau [Sphingobacterium sp. 21]
 gi|326550522|gb|ADZ78907.1| DNA polymerase III, subunits gamma and tau [Sphingobacterium sp.
           21]
          Length = 607

 Score = 81.7 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 83/246 (33%), Gaps = 54/246 (21%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T E   GQ      LK  I+ ++         LF GP G+GKTT A+++A+ +
Sbjct: 20  ARKYRPSTFETVVGQQHITGTLKNAIKNSQLAQA----FLFCGPRGVGKTTCARILAKTI 75

Query: 79  GVNFRST-------------------------SGPVIAKAGDLAALLTNL------EDRD 107
                S+                                  D+ +L+  +          
Sbjct: 76  NCQHLSSEIEACGTCDSCKSFQNGNSFSIHELDAASNNSVDDIRSLIEQVRIPPQTGKYK 135

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           +  IDE+H LS          +E+          P A ++ I         ATT    + 
Sbjct: 136 IYIIDEVHMLSTQAFNAFLKTLEE----------PPAYAIFIL--------ATTEKHKIL 177

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             +  R  I    N  ++E +   +   A   G+A   +    IA ++ G  R A  +  
Sbjct: 178 PTILSRCQI-FDFNRIKVEHIAGHLANIANKEGVAYDQDGLHLIAQKADGGLRDALSMFD 236

Query: 228 RVRDFA 233
           ++  F+
Sbjct: 237 QIVSFS 242


>gi|325969252|ref|YP_004245444.1| ATPase AAA [Vulcanisaeta moutnovskia 768-28]
 gi|323708455|gb|ADY01942.1| AAA ATPase central domain protein [Vulcanisaeta moutnovskia 768-28]
          Length = 327

 Score = 81.7 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 49/245 (20%), Positives = 89/245 (36%), Gaps = 37/245 (15%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           S+E   +   RP  +++   Q    + +K  +         + H+LF GPPG GKTT+A 
Sbjct: 3   SEETLWVEKYRPSRIDDIIDQDHVKARVKEML-----ANGNIPHLLFFGPPGTGKTTMAL 57

Query: 73  VVAR------------ELGVNFRSTSGPVIAKAGDLAALLTNLE-DRDVLFIDEIHRLSI 119
            +AR            EL  +       +  K  + A  +  ++    ++ +DE   ++ 
Sbjct: 58  AIARELYGDAWRENVLELNASDERGIAMIREKVKEFAKTIPTVKAPFRLIILDEADNMTP 117

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
             ++ L   ME +                   S    I        +  P+Q R  +  R
Sbjct: 118 DAQQALRRIMEMYT------------------SSVRFILLANYSSGIIEPIQSRCSL-FR 158

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
            +    + +   ++  A   G+ VTDEA   I   S+G  R A   L+       V   +
Sbjct: 159 FSPLPKDAVLGRLRDIASREGVKVTDEALEAIWDISQGDMRKAINTLQAAASLGGVVDEE 218

Query: 240 TITRE 244
            + + 
Sbjct: 219 AVYKA 223


>gi|222478820|ref|YP_002565057.1| Replication factor C [Halorubrum lacusprofundi ATCC 49239]
 gi|222451722|gb|ACM55987.1| Replication factor C [Halorubrum lacusprofundi ATCC 49239]
          Length = 327

 Score = 81.7 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 52/251 (20%), Positives = 92/251 (36%), Gaps = 36/251 (14%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M + +   +   +  +  I   RP++L++  GQ      L+ +IE      + + H+LF 
Sbjct: 1   MSEADEQTAATATGREIWIEKYRPQSLDDIHGQEAIVERLQSYIE-----QDDIPHLLFG 55

Query: 61  GPPGLGKTTLAQVVARE------LGVNFRSTSGPVIAKAGDLAALLTNL------EDRDV 108
           GP G GKTT A  +AR+         NF   +         +   +          D  +
Sbjct: 56  GPAGTGKTTAATAIARQVYGDDNWRGNFLELNASDQRGIDVVRDRIKGFARSSFGGDFRI 115

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +F+DE   L+   +  L   ME F                 + +RF  I +      + +
Sbjct: 116 VFLDEADSLTDEAQAALRRTMEQFS----------------DNTRF--ILSCNYSSKIID 157

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
           P+Q R  +  R +      +    +  A   G+ VTDE    +   + G  R A   L+ 
Sbjct: 158 PIQSRCAV-FRFSPLSDAAVAAQTREIAAAEGIEVTDEGVDALVYAADGDMRRAINSLQA 216

Query: 229 VRDFAEVAHAK 239
                E+   +
Sbjct: 217 AATTGEIVDEE 227


>gi|296109578|ref|YP_003616527.1| AAA ATPase central domain protein [Methanocaldococcus infernus ME]
 gi|295434392|gb|ADG13563.1| AAA ATPase central domain protein [Methanocaldococcus infernus ME]
          Length = 369

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 54/240 (22%), Positives = 98/240 (40%), Gaps = 17/240 (7%)

Query: 26  TLEEFTGQVEACSNLKV---FIEAAKARAE-ALDHVLFVGPPGLGKTTLAQVVARELGVN 81
             +E  GQ +A    K+   +++  +   E A  +VLF GPPG GKT +A+ +A E   +
Sbjct: 120 RFDEIIGQEDAKKKCKIIMKYLQNPELFGEWAPKNVLFYGPPGTGKTMMARALATETDSS 179

Query: 82  FRSTSGPVI--AKAGDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAMEDFQ 133
           F     P +     GD A ++  L  +       ++FIDE+  + +  E           
Sbjct: 180 FIMVKAPELIGEHVGDSAKMIRELYKKASESAPCIIFIDELDAIGLSREYQSLRGDVAEV 239

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           ++ ++ E    +  K        IAAT    +L + ++ RF   I       E+   I++
Sbjct: 240 VNALLTELDGIKENKG----VVTIAATNNPAMLDSAIRSRFEEEIEFKLPNDEERLKIME 295

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPR-IAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
              K   L V       +      + R I  +LL+     A +   + +++E  + AL +
Sbjct: 296 LYVKKMPLPVKANLKEFVEKTKGFSGRDIKEKLLKPALHRAILEDREYVSKEDLEWALKK 355


>gi|169829377|ref|YP_001699535.1| Holliday junction ATP-dependent DNA helicase ruvB [Lysinibacillus
          sphaericus C3-41]
 gi|168993865|gb|ACA41405.1| Holliday junction ATP-dependent DNA helicase ruvB [Lysinibacillus
          sphaericus C3-41]
          Length = 75

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 39/62 (62%), Gaps = 1/62 (1%)

Query: 4  REGLLSRNVSQEDADISL-LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           E +++   S  D    L LRP+ L ++ GQ +   NL++FIEAAK R E+LDHVL  GP
Sbjct: 2  SERMMASEASGYDEQFELSLRPQRLAQYIGQHKVKENLQIFIEAAKLRQESLDHVLLYGP 61

Query: 63 PG 64
          PG
Sbjct: 62 PG 63


>gi|288799735|ref|ZP_06405194.1| DNA polymerase III, gamma and tau subunit protein [Prevotella sp.
           oral taxon 299 str. F0039]
 gi|288332983|gb|EFC71462.1| DNA polymerase III, gamma and tau subunit protein [Prevotella sp.
           oral taxon 299 str. F0039]
          Length = 591

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 85/230 (36%), Gaps = 20/230 (8%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP + +   GQ      LK  I+A K         LF GP G+GKTT A++ A+ +
Sbjct: 8   ARKYRPASFDTVVGQKALTETLKNAIKANKLAHAY----LFCGPRGVGKTTCARIFAKTI 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI------IVEEILYPAMEDF 132
                +  G         AA        ++  +D     S+      + +  + P +  +
Sbjct: 64  NCFTPTAQGEACNHCESCAA-FNEQRSFNIFELDAASNNSVENIKALMEQTRIPPQVGKY 122

Query: 133 QLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           ++ ++               ++++   +    I ATT    +   +  R  I        
Sbjct: 123 KVFIIDEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQIYDFERM-T 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
           ++D+   ++  AK  G+    EA   IA ++ G  R A  +  +   FA+
Sbjct: 182 VQDIVNHLESVAKQEGITYESEALTIIAEKADGGMRDALSIFDQTASFAQ 231


>gi|251778579|ref|ZP_04821499.1| ATP-dependent protease, Lon family [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243082894|gb|EES48784.1| ATP-dependent protease, Lon family [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 630

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 60/283 (21%), Positives = 102/283 (36%), Gaps = 56/283 (19%)

Query: 1   MMDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M     L+S +      +I S LRP + +E  GQ  A  +L      +K  +    H++ 
Sbjct: 143 MSKLNNLVSLDEKVTSKNIMSFLRPDSFDEVVGQERAIKSL-----ISKLSSPYPQHIIL 197

Query: 60  VGPPGLGKTTLAQVVARELG----------------------VNFRSTSGPVIAKAGD-- 95
            GPPG+GKTT A++  +E                         + R  + P++    D  
Sbjct: 198 YGPPGVGKTTAARLALKEAKKLNFTPFDDESKFIEVDGTTLRWDPREITNPLLGSVHDPI 257

Query: 96  ---LAALLTNLE------------DRDVLFIDEIHRLSIIVEEILYPAMEDFQL------ 134
                  L+                  VLFIDEI  L  I++  L   +ED ++      
Sbjct: 258 YQGSKRYLSEAGVPEPKPGLVTEAHGGVLFIDEIGELDHILQNKLLKVLEDKRVEFSSSY 317

Query: 135 ----DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
               D    +           + F LI ATT+     NP        +       +D++ 
Sbjct: 318 YDPDDESTPKYIKYLFDNGAPADFVLIGATTKSPSEINPALRSRATEVYFEPLSSDDIEL 377

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
           IV++ A+   + + +  A +I+  +    R A  +L     +A
Sbjct: 378 IVKKAAEKLNVTLEEGVAKKISNYT-FEGRKAVNILTDAYGYA 419


>gi|320100775|ref|YP_004176367.1| replication factor C small subunit [Desulfurococcus mucosus DSM
           2162]
 gi|319753127|gb|ADV64885.1| replication factor C small subunit [Desulfurococcus mucosus DSM
           2162]
          Length = 347

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 62/300 (20%), Positives = 97/300 (32%), Gaps = 42/300 (14%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           +S     E       RPRTL+E   Q E    LK F+E      +++ H+LF GPPG GK
Sbjct: 20  VSGLSEAELLWAEKYRPRTLDEVVNQKEIVVRLKKFVE-----EKSIPHMLFAGPPGTGK 74

Query: 68  TTLAQVVAR-----ELGVNFRSTSGPVIAKAGDLAALLTNLEDR--------DVLFIDEI 114
           TT+A  +A      +        +     K   +   +               ++ +DE 
Sbjct: 75  TTMAHCLAHDLYGDDYKKYMLELNASDERKIEVIRGKVKEFARSRVVGEVPFKIVLLDEA 134

Query: 115 HRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRF 174
             ++   ++ L   ME +                   +RF L A       +  P+Q R 
Sbjct: 135 DNMTADAQQALRRLMELYSAT----------------TRFILTA--NYPSKIIEPIQSRT 176

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
            I  R +    ED+   ++       +   + A   I   S G  R A  +L+      E
Sbjct: 177 AI-FRFSPLRKEDVVERLRYICNAEKVKCDERALETIYELSEGDMRRAINILQTTAALGE 235

Query: 235 VAHA---KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
           V      K I           L     G        L  +      G  G++ I     E
Sbjct: 236 VVEEAVYKVIGLAHPREVREMLNEALSGNFTEARNKLRTL--MIEYGLSGVDIIRQIHKE 293


>gi|300709601|ref|YP_003735415.1| replication factor C small subunit [Halalkalicoccus jeotgali B3]
 gi|299123284|gb|ADJ13623.1| replication factor C small subunit [Halalkalicoccus jeotgali B3]
          Length = 329

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/252 (20%), Positives = 88/252 (34%), Gaps = 36/252 (14%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M + E        +E+  +   RP TL E  GQ E    L+ ++E      + L ++LF 
Sbjct: 1   MSETEESEPAGPGREEIWVEKYRPGTLGEVIGQEEITDRLERYVE-----RDDLPNLLFS 55

Query: 61  GPPGLGKTTLAQVVAREL------------GVNFRSTSGPVIAKAGDLAALLTNLEDRDV 108
           G  G+GKTT A  +ARE+              +       V  +  + A          +
Sbjct: 56  GSAGIGKTTCATAIAREVYGEDWRDNFLELNASDDRGIDVVRGRIKEFARASFGGYSYRI 115

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +F+DE   L+   +  L   ME F                   S    I +      + +
Sbjct: 116 IFLDEADSLTSDAQSALRRTMEQFS------------------SNTRFILSCNYSSKIID 157

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
           P+Q R  +  R +      +   ++  A + G+ +TD     +   + G  R A   L+ 
Sbjct: 158 PIQSRCAV-FRFSPISDAAVGERIREIAHIEGIEITDGGVEALVYAADGDMRRAVNSLQA 216

Query: 229 VRDFAEVAHAKT 240
                E    + 
Sbjct: 217 AAVMGETVDEEV 228


>gi|187933433|ref|YP_001887715.1| ATP-dependent protease, Lon family [Clostridium botulinum B str.
           Eklund 17B]
 gi|187721586|gb|ACD22807.1| ATP-dependent protease, Lon family [Clostridium botulinum B str.
           Eklund 17B]
          Length = 630

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 60/283 (21%), Positives = 102/283 (36%), Gaps = 56/283 (19%)

Query: 1   MMDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M     L+S +      +I S LRP + +E  GQ  A  +L      +K  +    H++ 
Sbjct: 143 MSKLNNLVSLDEKVTSKNIMSFLRPDSFDEVVGQERAIKSL-----ISKLSSPYPQHIIL 197

Query: 60  VGPPGLGKTTLAQVVARELG----------------------VNFRSTSGPVIAKAGD-- 95
            GPPG+GKTT A++  +E                         + R  + P++    D  
Sbjct: 198 YGPPGVGKTTAARLALKEAKKLNFTPFDDESKFVEVDGTTLRWDPREITNPLLGSVHDPI 257

Query: 96  ---LAALLTNLE------------DRDVLFIDEIHRLSIIVEEILYPAMEDFQL------ 134
                  L+                  VLFIDEI  L  I++  L   +ED ++      
Sbjct: 258 YQGSKRYLSEAGVPEPKPGLVTEAHGGVLFIDEIGELDHILQNKLLKVLEDKRVEFSSSY 317

Query: 135 ----DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
               D    +           + F LI ATT+     NP        +       +D++ 
Sbjct: 318 YDPDDESTPKYIKYLFDNGAPADFVLIGATTKSPSEINPALRSRATEVYFEPLSSDDIEL 377

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
           IV++ A+   + + +  A +I+  +    R A  +L     +A
Sbjct: 378 IVKKAAEKLNVTLEEGVAKKISNYT-FEGRKAVNILTDAYGYA 419


>gi|89891553|ref|ZP_01203058.1| DNA polymerase III gamma/tau subunit [Flavobacteria bacterium
           BBFL7]
 gi|89516327|gb|EAS18989.1| DNA  polymerase III  gamma/tau subunit [Flavobacteria bacterium
           BBFL7]
          Length = 624

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 54/234 (23%), Positives = 86/234 (36%), Gaps = 42/234 (17%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T E+  GQ      L    E A A       +LF GP G+GKTT A+++A+++
Sbjct: 8   ARKYRPETFEDVVGQSAITKTL----ENAIASNHLAQALLFTGPRGVGKTTCARILAKKI 63

Query: 79  G-------------VNFRSTSGPVIAKAGDLAALLT------NLEDRDVLFIDEIHRLSI 119
                          N             D+ +L         + +  V  IDE+H LS 
Sbjct: 64  NQQNAEVDPDEDFAFNIFELDAASNNSVDDIRSLTEQVRIPPQVGNFKVYIIDEVHMLST 123

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
                    +E+          P A ++ I         ATT    +   +  R  I   
Sbjct: 124 AAFNAFLKTLEE----------PPAHAIFIL--------ATTEKHKIIPTILSRCQIFDF 165

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                + D++  ++R A + G+   DEA   IA ++ G  R +  +  RV  F+
Sbjct: 166 KRI-TVADMRGHLKRIAGIEGITADDEALHIIAQKADGALRDSLSIFDRVVSFS 218


>gi|156841917|ref|XP_001644329.1| hypothetical protein Kpol_1066p38 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156114969|gb|EDO16471.1| hypothetical protein Kpol_1066p38 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 336

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 63/167 (37%), Gaps = 20/167 (11%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            L      +    +   RP +L+E  GQ E  + ++ F+E  K     L H+LF GPPG 
Sbjct: 2   SLGRATNRENLPWVEKYRPTSLDEVYGQNEIVNTVRKFVEEGK-----LPHLLFYGPPGT 56

Query: 66  GKTTLAQVVAREL------------GVNFRSTSGPVIAKAGDLAALLTNLEDR-DVLFID 112
           GKT+    +A+E+              +       V  +  D A+          ++ +D
Sbjct: 57  GKTSTIIALAKEIYGKNYHNMVLELNASDDRGIDVVRNQVKDFASTRQIFSKGFKLIILD 116

Query: 113 EIHRLSIIVEEILYPAMEDFQLD--LMVGEGPSARSVKINLSRFTLI 157
           E   ++   +  L   +E +  +    +    + +     LSR T  
Sbjct: 117 EADAMTNAAQNSLRRIIEKYTKNTRFCILANYAYKLTPALLSRCTRF 163


>gi|55379214|ref|YP_137064.1| replication factor C small subunit [Haloarcula marismortui ATCC
           43049]
 gi|55231939|gb|AAV47358.1| replication factor C small subunit [Haloarcula marismortui ATCC
           43049]
          Length = 345

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 84/230 (36%), Gaps = 36/230 (15%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
             +E+  I   RP+TL++  G       LK ++    +R + L H+LF GP G GKTT A
Sbjct: 30  AGREEVWIEKYRPQTLDDVMGHENIVGRLKSYV----SRND-LSHMLFSGPAGTGKTTCA 84

Query: 72  QVVARE-----LGVNFRSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLSI 119
             +ARE        +F   +         +   + N            ++F+DE   L+ 
Sbjct: 85  TAIARELYGDDWREHFLELNASDERGIDVVRDRIKNFARTSFGGVEYRIIFLDEADALTS 144

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
             +  L   ME F                   +    I +      + +P+Q R  +  R
Sbjct: 145 DAQSALRRTMEQFS------------------NNVRFILSCNYSSQIIDPIQSRCAV-FR 185

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
            +    + +   ++  A    + +T++    +   + G  R A   L+  
Sbjct: 186 FSPLADDAVAEEIRTIAAEEDIELTEDGLDALVYAADGDMRKAINGLQAA 235


>gi|304314452|ref|YP_003849599.1| replication factor C, small subunit [Methanothermobacter
           marburgensis str. Marburg]
 gi|302587911|gb|ADL58286.1| replication factor C, small subunit [Methanothermobacter
           marburgensis str. Marburg]
          Length = 317

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 84/230 (36%), Gaps = 36/230 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+ L++  GQ      LK ++E       ++ +++F GP G+GKTT A  +AR
Sbjct: 4   PWVEKYRPQKLDDIVGQEHIIPRLKRYVE-----ERSMPNLMFTGPAGVGKTTTALALAR 58

Query: 77  E-----LGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEI 124
           E        NF   +         +   + N            ++F+DE+  ++   +  
Sbjct: 59  EILGEYWRQNFLELNASDARGIDTVRTSIKNFCRLKPVGAPFRIIFLDEVDNMTKDAQHA 118

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           L   ME +                      + I +      + +P+Q R  I  R    +
Sbjct: 119 LRREMEMYTKT------------------SSFILSCNYSSKIIDPIQSRCAI-FRFLPLK 159

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
              + + ++  A+  GL    +A   +   + G  R A  +L+      E
Sbjct: 160 GRHIISRLEYIAEQEGLEYEPQALDTVVYFAEGDLRKAINILQSAASLGE 209


>gi|315187318|gb|EFU21074.1| DNA polymerase III, subunits gamma and tau [Spirochaeta thermophila
           DSM 6578]
          Length = 510

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 58/302 (19%), Positives = 110/302 (36%), Gaps = 30/302 (9%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +   +  RP+T ++  GQ    S L   ++A +         LF GP G+GKT+ A+++A
Sbjct: 4   EVTANRRRPQTFKDLKGQEFVVSTLTNALKAGRVAHAY----LFSGPRGVGKTSAARILA 59

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII-----VEEILYPAME 130
           + L         P           ++     DV+ ID     S+       EE+L+   +
Sbjct: 60  KALNCE--QGVTPEPCGTCTSCKEISQGTAIDVIEIDGASNTSVNDVRVIREEVLFAPGK 117

Query: 131 DFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
                 ++ E             ++++        I ATT +  +   ++ R        
Sbjct: 118 ARYKVYIIDEVHMLSNSAFNALLKTIEEPPPYVVFIFATTELQRVPATIRSRCQ-QYHFR 176

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
               E + ++++  A    + V +EA   IA  + G+ R A  L  +V  F+E       
Sbjct: 177 LISPEVIASLLREAASEMQVEVEEEALSWIAKEADGSLRDAYTLFDQVVSFSEGR----- 231

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
                  AL++  +  +GF++L       +     G    +  I          + DL E
Sbjct: 232 ----LSYALIQEKLGLVGFERLQAVVEACVREEVKGALDLVHEILMSGVSVEQCVVDLAE 287

Query: 302 PY 303
            +
Sbjct: 288 YF 289


>gi|188588300|ref|YP_001922698.1| ATP-dependent protease, Lon family [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188498581|gb|ACD51717.1| ATP-dependent protease, Lon family [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 630

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 60/283 (21%), Positives = 102/283 (36%), Gaps = 56/283 (19%)

Query: 1   MMDREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M     L+S +      +I S LRP + +E  GQ  A  +L      +K  +    H++ 
Sbjct: 143 MSKLNNLVSLDEKVTSKNIMSFLRPDSFDEVVGQERAIKSL-----ISKLSSPYPQHIIL 197

Query: 60  VGPPGLGKTTLAQVVARELG----------------------VNFRSTSGPVIAKAGD-- 95
            GPPG+GKTT A++  +E                         + R  + P++    D  
Sbjct: 198 YGPPGVGKTTAARLALKEAKKLNFTPFDDESKFIEVDGTTLRWDPREITNPLLGSVHDPI 257

Query: 96  ---LAALLTNLE------------DRDVLFIDEIHRLSIIVEEILYPAMEDFQL------ 134
                  L+                  VLFIDEI  L  I++  L   +ED ++      
Sbjct: 258 YQGSKRYLSEAGVPEPKPGLVTEAHGGVLFIDEIGELDHILQNKLLKVLEDKRVEFSSSY 317

Query: 135 ----DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
               D    +           + F LI ATT+     NP        +       +D++ 
Sbjct: 318 YDPDDESTPKYIKYLFDNGAPADFVLIGATTKSPSEINPALRSRATEVYFEPLSSDDIEL 377

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
           IV++ A+   + + +  A +I+  +    R A  +L     +A
Sbjct: 378 IVKKAAEKLNVTLEEGVAKKISNYT-FEGRKAVNILTDAYGYA 419


>gi|330837779|ref|YP_004412420.1| DNA polymerase III, subunits gamma and tau [Spirochaeta coccoides
           DSM 17374]
 gi|329749682|gb|AEC03038.1| DNA polymerase III, subunits gamma and tau [Spirochaeta coccoides
           DSM 17374]
          Length = 623

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 90/227 (39%), Gaps = 25/227 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T E+  GQ    S     I  A  +       LF GP G+GKT+ A+++A+ L    
Sbjct: 11  RPQTFEDMAGQDFFVST----ISNAIKQKRIAHAYLFSGPRGVGKTSSARILAKALNCEQ 66

Query: 83  RSTSGP--VIAKAGDLAALLTNLEDRDVLFIDEIHRLSII-----VEEILYPAMEDFQLD 135
             T+ P  V +   ++ A  +     DV+ ID     S+       +E+++P  +     
Sbjct: 67  GPTAHPCGVCSNCKEITAGNST----DVIEIDGASNTSVNDIRAIKDEVMFPPQKCRYKI 122

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             ++++        I ATT    +   ++ R         + +E
Sbjct: 123 YIIDEVHMLSTSAFNALLKTIEEPPEYIIFIFATTETQKVPATIRSRCQ-QFHFRLFTME 181

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
            +  ++   A  T +    +A   IA  S G+ R A  L  ++  F+
Sbjct: 182 TIVKLLTEAAAETDVQADHDALLWIARESTGSMRDAYTLFDQIVSFS 228


>gi|282859211|ref|ZP_06268333.1| DNA polymerase III, subunit gamma and tau [Prevotella bivia
           JCVIHMP010]
 gi|282588030|gb|EFB93213.1| DNA polymerase III, subunit gamma and tau [Prevotella bivia
           JCVIHMP010]
          Length = 595

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 49/263 (18%), Positives = 99/263 (37%), Gaps = 25/263 (9%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T +   GQ    + LK  +++ K         LF GP G+GKTT A++ A+ +
Sbjct: 8   ARKYRPATFDSVVGQAALTTTLKNAVKSGKLAHAY----LFCGPRGVGKTTTARIFAKAI 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI------IVEEILYPAMEDF 132
                ++ G    +     A        ++  +D     S+      + +  + P +  +
Sbjct: 64  NCEHPTSEGEACNECESCKA-FNEGRSYNIFELDAASNNSVENIKDLMEQTRIPPQIGKY 122

Query: 133 QLDLMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           ++ ++               ++++   ++   I ATT    +   +  R  I        
Sbjct: 123 KVFIIDEVHMLSSQAFNAFLKTLEEPPAQVIFILATTEKHKILPTILSRCQIYDFERM-S 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           + D+   ++R A    +   ++A   IA ++ G  R A  +  +V  F++      IT +
Sbjct: 182 VPDIIEHLKRVAAKENITYEEKALNIIAEKADGGMRDALSVFDQVASFSQ----GNITYQ 237

Query: 245 IADAALLRLAIDKMGFDQLDLRY 267
                L  L  D   F+ +DL  
Sbjct: 238 KVIEDLNVLDEDNY-FNIIDLAL 259


>gi|257387186|ref|YP_003176959.1| replication factor C small subunit [Halomicrobium mukohataei DSM
           12286]
 gi|257169493|gb|ACV47252.1| Replication factor C [Halomicrobium mukohataei DSM 12286]
          Length = 322

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 49/251 (19%), Positives = 89/251 (35%), Gaps = 41/251 (16%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M + E        +E+  I   RP+TL +  G       L+ +++        L H+LF 
Sbjct: 1   MSEVER-----SGREEVWIEKYRPQTLSDVVGHETIVERLQSYVD-----RNDLSHMLFA 50

Query: 61  GPPGLGKTTLAQVVARE-----LGVNFRSTSGPVIAKAGDLAALLTNLEDRD-------V 108
           GP G GKTT A  +ARE        +F   +         +   + +            +
Sbjct: 51  GPAGTGKTTSATAIARELYGDDWQEHFLELNASDERGIDVVRDRIKSFARTSFGGVDYRI 110

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +F+DE   L+   +  L   ME F                   +    I +      + +
Sbjct: 111 IFLDEADALTSDAQSALRRTMEQFS------------------NNVRFIMSCNYSSQIID 152

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
           P+Q R  +  R +    E ++  ++  A   G+ +TD+    +   + G  R A   L+ 
Sbjct: 153 PIQSRCAV-FRFSPLGDEAVEAEIRHIADEEGIELTDDGVDALVYAAGGDMRKAINGLQA 211

Query: 229 VRDFAEVAHAK 239
                +V   +
Sbjct: 212 ASVSGDVVDEE 222


>gi|330834114|ref|YP_004408842.1| replication factor C large subunit [Metallosphaera cuprina Ar-4]
 gi|329566253|gb|AEB94358.1| replication factor C large subunit [Metallosphaera cuprina Ar-4]
          Length = 437

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/227 (16%), Positives = 78/227 (34%), Gaps = 32/227 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP +L+E   Q +    L+ +I++          VL  GPPG+GKTT+A  +A+
Sbjct: 4   PWVVKYRPNSLDEIENQEDVKEELRSWIDSWIKGKPNYKSVLLYGPPGIGKTTMALALAK 63

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE--------DRDVLFIDEIHRLSIIVE----EI 124
             G+     +         L  +                ++F+DEI  +    +      
Sbjct: 64  SYGLEIIEMNASDTRNVTSLRGIAEKASVTGSLFSDRGKLIFLDEIDGIQSKQDFGAIST 123

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           +   + + +  +++            L   T +    ++G +                  
Sbjct: 124 VLELISNTKYPIIMAANNPWDPNLRELRNATKMIEIKKLGKI------------------ 165

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
              ++ ++++      +   D A   I   S G  R A  +L+ V +
Sbjct: 166 --PMRRLLKKICANEKVKCEDAAIDVIIEASDGDARYAINMLQSVAE 210


>gi|322807945|emb|CBZ05520.1| ATP-dependent protease LonB-like Type I [Clostridium botulinum
           H04402 065]
          Length = 639

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 59/281 (20%), Positives = 97/281 (34%), Gaps = 57/281 (20%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG- 79
           LLRP +  E  GQ     +L      +K  +    H++  GPPG+GKT+ A++   E+  
Sbjct: 172 LLRPASFSEIIGQERPIKSL-----LSKIASPYPQHIILYGPPGVGKTSAARLALEEVKK 226

Query: 80  ---------------------VNFRSTSGPVIAKA---------GDLAA---------LL 100
                                 + R  + P++             DLA          L+
Sbjct: 227 LKYTPFYKDSKFVEVDGTTLRWDPREITNPLLGSVHDPIYQGSKRDLAETGIPEPKLGLV 286

Query: 101 TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV------GEGPSARSVKIN---- 150
           T      VLFIDEI  L  +++  L   +ED +++          E        +     
Sbjct: 287 TEAHGG-VLFIDEIGELDDMLQNKLLKVLEDKRVEFSSSYYDPDDENTPKYIKHLFENGA 345

Query: 151 LSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACE 210
            + F LI ATTR     NP        +       +D++ IV   A    + + D    +
Sbjct: 346 PADFVLIGATTREPSEINPALRSRCAEVFFEPLSSKDIEKIVINAADKLNIILED-GVAQ 404

Query: 211 IAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
              R     R A  +L  V  +A   + +       + A+ 
Sbjct: 405 TISRYTIEGRKAVNILSDVYGYALYRNKEYKEGTKLNIAMD 445


>gi|224475611|ref|YP_002633217.1| DNA polymerase III gamma and tau subunits [Staphylococcus carnosus
           subsp. carnosus TM300]
 gi|222420218|emb|CAL27032.1| DNA polymerase III gamma and tau subunits [Staphylococcus carnosus
           subsp. carnosus TM300]
          Length = 583

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 55/277 (19%), Positives = 103/277 (37%), Gaps = 27/277 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RP++ ++  GQ      L+  I    A+ +     +F GP G GKT++A+V A+
Sbjct: 5   ALYRMYRPQSFDDVVGQEHVTKTLRNAI----AKGKQSHAYIFSGPRGTGKTSIAKVFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +         P      D+   +T   + DV+ ID      +  +  I +++ Y   + 
Sbjct: 61  AINCPNSVDGEPCNEC--DICKSITQGSNSDVIEIDAASNNGVDEIRNIRDKVKYAPSQS 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++   +    I ATT    +   +  R         
Sbjct: 119 KYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISR-AQRFDFKA 177

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA----HA 238
             ++ +   ++  A+   +   DEA   IA  S G  R A  ++ +   F +       A
Sbjct: 178 IGLDQIIERLRYVAESQHIEYDDEAIAFIAKASEGGMRDALSIMDQAIAFGDEHLTLQDA 237

Query: 239 KTITREIADAALLRLAIDKMGFDQLD--LRYLTMIAR 273
             +T  + +A+L  L  D       D   RY   IA 
Sbjct: 238 LNVTGSVDEASLNALLNDVANGQVKDAFARYHQFIAE 274


>gi|218290816|ref|ZP_03494885.1| ATP-dependent protease LonB [Alicyclobacillus acidocaldarius LAA1]
 gi|218239174|gb|EED06375.1| ATP-dependent protease LonB [Alicyclobacillus acidocaldarius LAA1]
          Length = 558

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 57/282 (20%), Positives = 98/282 (34%), Gaps = 56/282 (19%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +      RP+ +++  GQ +    L+     A        HV+  GPPG+GKT  A+++ 
Sbjct: 56  EPLAERTRPQRIDDIIGQQDGVRALR-----AALCGPNPQHVIIYGPPGVGKTAAARLIL 110

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDV--------------------------- 108
            E      S   P  AK  +L A     ++R +                           
Sbjct: 111 EEAKRTPGSPFKP-DAKFIELDATTARFDERGIADPLIGSVHDPIYQGAGAMGIAGIPQP 169

Query: 109 ------------LFIDEIHRLSIIVEEILYPAMEDFQLDL----MVGEGPSARSVKINL- 151
                       LFIDEI  L  I    L   +ED ++ L       E  +      ++ 
Sbjct: 170 KQGAVTKAHGGVLFIDEIGELHPIQMNKLLKVLEDRKVFLESAYYSSEDTNIPVHIHDIF 229

Query: 152 -----SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDE 206
                + F L+ ATTR      P      + I       E+++ + +  A+  G+ + + 
Sbjct: 230 QNGLPADFRLVGATTRSPEELPPALRSRCVEIFFRALTREEIRQVAEGAAEKLGMPLEEG 289

Query: 207 AACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
            A  +A  +    R A  L++     A +    +I RE  + 
Sbjct: 290 VAEAVADYATN-GRDAVNLVQMAGSLAMIEKRPSIRREDIEW 330


>gi|153956485|ref|YP_001397250.1| La-related protease [Clostridium kluyveri DSM 555]
 gi|219856788|ref|YP_002473910.1| hypothetical protein CKR_3445 [Clostridium kluyveri NBRC 12016]
 gi|146349343|gb|EDK35879.1| La-related protease [Clostridium kluyveri DSM 555]
 gi|219570512|dbj|BAH08496.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 631

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 65/278 (23%), Positives = 105/278 (37%), Gaps = 59/278 (21%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           E L S+N+S+      LLRP T +E  GQ  A  ++      +K  +    H++  GPPG
Sbjct: 150 EVLDSKNLSKN--IQRLLRPETFDEIIGQRRAVESI-----LSKIASPYPQHIILYGPPG 202

Query: 65  LGKTTLAQVVARELG----------------------VNFRSTSGPVIAKA--------- 93
           +GKTT A++   E                         + R  + P++            
Sbjct: 203 VGKTTAARIALEEAKKLKFTPFNKDAKFVEVDGTTLRWDPREITNPLLGSVHDPIYQGTR 262

Query: 94  GDLAA---------LLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL---------- 134
            DLA          L+T      VLFIDEI  L  +++  L   +ED ++          
Sbjct: 263 RDLAEGGIPEPKLGLVTEAHGG-VLFIDEIGELDEMLQNKLLKVLEDKRVEFSSSYYDPD 321

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           D  + +       K   + F LI ATTR     NP        +      I+D+++IV+ 
Sbjct: 322 DESIPKYIKYLFDKGAPADFLLIGATTREPGEINPALRSRCTEVYFEPLSIKDIQSIVEN 381

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
            A    + + +    E+  +     R A  +L  V  +
Sbjct: 382 AALKLNIEM-ESGVSELISKYTIEGRKAINILSDVYGY 418


>gi|167393611|ref|XP_001740649.1| replication factor C subunit [Entamoeba dispar SAW760]
 gi|165895162|gb|EDR22913.1| replication factor C subunit, putative [Entamoeba dispar SAW760]
          Length = 329

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 84/225 (37%), Gaps = 19/225 (8%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +S ++A     RP+TL++  GQ E    LK  +++       L ++LF GPPG GKTT  
Sbjct: 1   MSGQNAWSEKYRPKTLDDVQGQEEVIKLLKSSLDSG------LPNLLFFGPPGSGKTTSI 54

Query: 72  QVVARE-----LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
             VA E             +         +   L N   +DV   D I        +   
Sbjct: 55  LAVAHELFQGYFKERVLELNASNQRGIEMVRTTLKNYAMQDVTHYDGIP-------DYKL 107

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
             +++        +    R ++              +  +  P+  R  I  R +    E
Sbjct: 108 IILDESDALTPDAQTALRRMMEDFTKNTRFCLICNYISRILPPISSRC-IKFRFSALPKE 166

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            +   +Q   +  G +VT+EA   +++ S G  R    LL+++  
Sbjct: 167 IVSNRLQMICEKEGFSVTNEAIQAVSILSEGDLRYGIGLLQKLSQ 211


>gi|222097842|ref|YP_002531899.1| ATPase, AAA family [Bacillus cereus Q1]
 gi|221241900|gb|ACM14610.1| ATPase, AAA family [Bacillus cereus Q1]
          Length = 146

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 2/92 (2%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           ++R+  L   V  +      +RP  ++E  GQ       K+     +A       ++  G
Sbjct: 37  IERDYTLRETVKMKQPLAHRMRPTNIQEIIGQQHLVGEGKILWRMVQANH--FQSMILYG 94

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKA 93
           PPG GKT++A  +A   G  FR  +     K 
Sbjct: 95  PPGTGKTSIASAIAGSTGTPFRLLNAVTHNKK 126


>gi|255710491|ref|XP_002551529.1| KLTH0A01540p [Lachancea thermotolerans]
 gi|238932906|emb|CAR21087.1| KLTH0A01540p [Lachancea thermotolerans]
          Length = 328

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 82/229 (35%), Gaps = 37/229 (16%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           ++    I   RP+TL++  GQ E    ++ F++  +     L H+LF GPPG GKT++  
Sbjct: 5   AENLPWIEKYRPQTLDDVYGQREIVGTVRKFVKEGR-----LPHLLFYGPPGTGKTSMIV 59

Query: 73  VVAREL------------GVNFRSTSGPVIAKAGDLAALLTNLEDR-DVLFIDEIHRLSI 119
            ++RE+              +       V  +  + A+          ++ +DE   ++ 
Sbjct: 60  ALSREIYGTNYRNMVLELNASDDRGIDVVRNQIKEFASTRQIFSKGFKLIILDEADAMTN 119

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
             +  L   +E +       +                         LT  L  R     R
Sbjct: 120 AAQNALRRIIEKY------TKNTRF------------CILANYAHKLTPALLSRC-TRFR 160

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
                 + ++  V +   L  L ++ EA   +   S+G  R A  +L+ 
Sbjct: 161 FQPLPTDAIEKRVNKVLILENLKLSREAFTALLRLSKGDMRRALNVLQA 209


>gi|222100874|ref|YP_002535442.1| DNA polymerase III, gamma and tau subunit [Thermotoga neapolitana
           DSM 4359]
 gi|221573264|gb|ACM24076.1| DNA polymerase III, gamma and tau subunit [Thermotoga neapolitana
           DSM 4359]
          Length = 473

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 57/265 (21%), Positives = 89/265 (33%), Gaps = 57/265 (21%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +      RP+T  E   Q       K  I  A  +       +F GP G GKTTLA+++A
Sbjct: 2   EVLYRKYRPKTFSEVVNQDHV----KKAIIGAIQKNSVAHGYIFAGPRGTGKTTLARILA 57

Query: 76  RELGVNFRST------------------------SGPVIAKAGDLAALLTNLEDRD---- 107
           + L    R                                   ++  +   +  R     
Sbjct: 58  KSLNCENREGVEPCNRCRSCREIDEGTFMDVIELDAASNRGIDEIRRIRDAVGYRPMEGK 117

Query: 108 --VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
             V  IDE+H L+      L   +E+                    S    + ATT +  
Sbjct: 118 YKVYIIDEVHMLTKEAFNALLKTLEE------------------PPSHVVFVLATTNLEK 159

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           +   +  R  +    N  + E ++  +Q  A+  G+ + DEA   IA R+ G  R A  +
Sbjct: 160 VPPTIISRCQVFEFRNIPD-ELIEKRLQEVARAEGIDIDDEALRFIARRAAGGMRDALTM 218

Query: 226 LRRVRDFAEVAHAKTITREIADAAL 250
           L +V  F+E      I  E    AL
Sbjct: 219 LEQVWKFSE----GKIDLETVHRAL 239


>gi|254520720|ref|ZP_05132776.1| ATP-dependent proteinase La [Clostridium sp. 7_2_43FAA]
 gi|226914469|gb|EEH99670.1| ATP-dependent proteinase La [Clostridium sp. 7_2_43FAA]
          Length = 630

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 63/279 (22%), Positives = 102/279 (36%), Gaps = 59/279 (21%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           E L S+ +++    +SLLRP T +E  GQ  A  +L      +K  +    H++  GPPG
Sbjct: 150 EELDSKKINKN--VMSLLRPETFDEVVGQERAIKSL-----ISKMASPYPQHIILYGPPG 202

Query: 65  LGKTTLAQVVARELG----------------------VNFRSTSGPVIAKA--------- 93
           +GKT+ A++   E                         + R  + P++            
Sbjct: 203 VGKTSAARLALEEAKKLQSTPFDGDSKFVEVDGTTLRWDPREITNPLLGSVHDPIYQGSK 262

Query: 94  GDLAAL---------LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV------ 138
            DLA +         +T      VLFIDEI  L  I++  L   +ED +++         
Sbjct: 263 KDLAEIGVPEPKTGLVTEAHGG-VLFIDEIGELDEILQNKLLKVLEDKRVEYSSSYYDPD 321

Query: 139 GEGPSARSVKIN----LSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
            E        +      + F LI ATTR     NP        +        D+K I+  
Sbjct: 322 DENTPEYIKYLFEKGAPADFVLIGATTREPGKINPALRSRCTEVYFEPLSPSDIKGIIDN 381

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
            +K   + + D  A  +  R     R A  +L     ++
Sbjct: 382 ASKKLNVQLEDGIAD-LISRYTIEGRKAVNILADAYGYS 419


>gi|159110203|ref|XP_001705363.1| Replication factor C, subunit 4 [Giardia lamblia ATCC 50803]
 gi|157433446|gb|EDO77689.1| Replication factor C, subunit 4 [Giardia lamblia ATCC 50803]
          Length = 322

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 60/246 (24%), Positives = 93/246 (37%), Gaps = 42/246 (17%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           I   RPRTL+   G  E  + L+ F     A    L ++LF G PGLGKTT+A  +A ++
Sbjct: 7   IERYRPRTLDGLIGNPEILARLRYF-----AAQGNLPNILFAGGPGLGKTTIALCLANQM 61

Query: 79  GVNFRST-----SGPVIAKAGDLAALLTNLEDRDV---------LFIDEIHRLSIIVEEI 124
               RS      +        D+ A +     + V         +F+DE   ++   +++
Sbjct: 62  LGAHRSVAFLELNASDERNVSDIRAKVKTFAQKQVTLPAGIQKLVFLDECDAMTEAAQQV 121

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           L   M+D        E  S R             A   +  +  P+Q R  +   +   +
Sbjct: 122 LRRIMDD--------ETGSTR----------FCLACNNISKVIEPVQSRCCVLRIMPATQ 163

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            E L   +Q   +  G+    EA  E+   S    R     L+ V D    A+ K IT  
Sbjct: 164 AE-LIKYLQEICEKEGVKSDTEALKELISISGNDVRSCLNSLQLVAD----ANNKVITVA 218

Query: 245 IADAAL 250
               AL
Sbjct: 219 GVQKAL 224


>gi|119719185|ref|YP_919680.1| replication factor C small subunit [Thermofilum pendens Hrk 5]
 gi|150415673|sp|A1RWU7|RFCS_THEPD RecName: Full=Replication factor C small subunit; Short=RFC small
           subunit; AltName: Full=Clamp loader small subunit
 gi|119524305|gb|ABL77677.1| replication factor C small subunit [Thermofilum pendens Hrk 5]
          Length = 325

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 59/246 (23%), Positives = 98/246 (39%), Gaps = 30/246 (12%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
            E+  +   RPR+L+E   Q E    LK F++      + + H+LF GPPG GKTT A  
Sbjct: 2   SEELWVEKYRPRSLDEIVDQEEIVKRLKEFVK-----NKNMPHLLFAGPPGTGKTTAALA 56

Query: 74  VARE-----LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           +A +        N    +         + + + +      L I ++    +I++E     
Sbjct: 57  LAHDLYGESWRDNTLELNASDERGIDVIRSRIKDYART--LPIGDVPFKLVILDEA---- 110

Query: 129 MEDFQLDLMVGEGPSA--RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
                 D M G+   A  R++++       I        +  P+Q R  +  R       
Sbjct: 111 ------DNMTGDAQQALRRTMELFSRNTRFILIANYASKIIEPIQSRCAV-FRFQPLPKG 163

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           D    ++  A+  G+ V D A   I   S+G  R A   L+     A  A ++ +T E+ 
Sbjct: 164 DAFQRLRWIAQQEGITVDDGALEAIWEESQGDLRKAINTLQ-----AASAISRNVTEEVV 218

Query: 247 DAALLR 252
            AAL R
Sbjct: 219 YAALGR 224


>gi|288924767|ref|ZP_06418704.1| LOW QUALITY PROTEIN: DNA polymerase III, subunit gamma and tau
           [Prevotella buccae D17]
 gi|288338554|gb|EFC76903.1| LOW QUALITY PROTEIN: DNA polymerase III, subunit gamma and tau
           [Prevotella buccae D17]
          Length = 258

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 42/254 (16%), Positives = 88/254 (34%), Gaps = 24/254 (9%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP + +   GQ    + LK  +++ K         LF GP G+GKTT A++ A+ +
Sbjct: 5   ARKYRPMSFDSVVGQSALTTTLKNAVKSGKLAHAY----LFCGPRGVGKTTCARIFAKAI 60

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI------IVEEILYPAMEDF 132
                   G    +     A        ++  +D     S+      + +  + P +  +
Sbjct: 61  NCEHPHDDGEACNECESCKA-FNEQRSYNIFELDAASNNSVENIKALMEQTRIPPQVGRY 119

Query: 133 QLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           ++ ++               ++++   +    + ATT    +   +  R  I        
Sbjct: 120 KVFIIDEVHMLSTAAFNAFLKTLEEPPAHVIFVLATTEKHKILPTILSRCQIYDFERM-T 178

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           + +    ++  A   G+   ++A   IA ++ G  R A  +  +   F +      IT  
Sbjct: 179 VPNTIAHLKMVADKEGITYDEQALEVIAEKADGGMRDALSIFDQAASFCQ----GDITYA 234

Query: 245 IADAALLRLAIDKM 258
                L  L +D  
Sbjct: 235 KVIEDLNVLDVDNY 248


>gi|150400153|ref|YP_001323920.1| replication factor C small subunit [Methanococcus vannielii SB]
 gi|166225157|sp|A6US36|RFCS_METVS RecName: Full=Replication factor C small subunit; Short=RFC small
           subunit; AltName: Full=Clamp loader small subunit
 gi|150012856|gb|ABR55308.1| Replication factor C [Methanococcus vannielii SB]
          Length = 315

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 84/225 (37%), Gaps = 37/225 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP  L+E  G  E    LK ++E      +++ H+LF G PG+GKTT A  +A+
Sbjct: 4   PWVEKYRPENLDEVVGHQEIIKRLKNYVE-----KKSMPHLLFSGSPGVGKTTAALCLAK 58

Query: 77  ------------ELGVNFRSTSGPVIAKAGDLAALLT-NLEDRDVLFIDEIHRLSIIVEE 123
                       EL  +       +  K  D A           V+F+DE   L+   + 
Sbjct: 59  DLYGNTWKENFLELNSSDERGIDVIRTKVKDFARTKPIGDAPFKVIFLDESDALTSDAQN 118

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
            L   ME +                 ++ RF L  +      +  P+Q R  I  R +  
Sbjct: 119 ALRRTMEKYS----------------DICRFVL--SCNYPSKIIPPIQSRCAI-FRFSPL 159

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
           + EDL   ++  ++   + V       I   S G  R A  +L+ 
Sbjct: 160 KTEDLVKNLKEISEKESINVEKSGMDAIIYVSEGDMRKAINVLQT 204


>gi|153941520|ref|YP_001392977.1| ATP-dependent protease [Clostridium botulinum F str. Langeland]
 gi|152937416|gb|ABS42914.1| ATP-dependent protease [Clostridium botulinum F str. Langeland]
          Length = 639

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 58/281 (20%), Positives = 96/281 (34%), Gaps = 57/281 (20%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG- 79
           LLRP +  E  GQ     +L      +K  +    H++  GPPG+GKT+ A++   E+  
Sbjct: 172 LLRPASFSEIIGQERPIKSL-----LSKIASPYPQHIILYGPPGVGKTSAARLALEEVKK 226

Query: 80  ---------------------VNFRSTSGPVIAKA---------GDLAA---------LL 100
                                 + R  + P++             DLA          L+
Sbjct: 227 LKYTPFYKDSKFVEVDGTTLRWDPREITNPLLGSVHDPIYQGSKRDLAETGIPEPKLGLV 286

Query: 101 TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV------GEGPSARSVKIN---- 150
           T      VLFIDEI  L  +++  L   +ED +++          E        +     
Sbjct: 287 TEAHGG-VLFIDEIGELDDMLQNKLLKVLEDKRVEFSSSYYDPDDENTPNYIKHLFENGA 345

Query: 151 LSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACE 210
            + F LI ATTR     NP        +       +D++ IV   A    + + D    +
Sbjct: 346 PADFVLIGATTREPSEINPALRSRCAEVFFEPLSSKDIEKIVINAADKLNIILED-GVAQ 404

Query: 211 IAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
              R     R A  +L  V  +A   + +       +  + 
Sbjct: 405 TISRYTIEGRKAVNILSDVYGYALYRNKEYKEGTKLNITMD 445


>gi|188997277|ref|YP_001931528.1| DNA polymerase III, subunits gamma and tau [Sulfurihydrogenibium
           sp. YO3AOP1]
 gi|188932344|gb|ACD66974.1| DNA polymerase III, subunits gamma and tau [Sulfurihydrogenibium
           sp. YO3AOP1]
          Length = 501

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 46/259 (17%), Positives = 83/259 (32%), Gaps = 53/259 (20%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +A     RP++ +E  GQ      LK  ++  +         +F GP G+GKTT+A++++
Sbjct: 4   EAFSRKYRPKSFQEVIGQEHVVKTLKNAVKLDRVSHAY----IFSGPRGVGKTTIARILS 59

Query: 76  RELGVN------------------------FRSTSGPVIAKAGDLAALLTNLEDRDV--- 108
           + L                                        D+  +  N+  + +   
Sbjct: 60  KVLNCKNPVDYESCNQCENCIEIDKGSFPDMYEIDAASNRGIDDIRMIRDNVGYQPIKGK 119

Query: 109 ---LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
                IDE H L+      L   +E+                     R   I ATT +  
Sbjct: 120 YKVYIIDEAHMLTKEAFNALLKTLEE------------------PPPRNIFILATTELYK 161

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           +   ++ R    I       E +K  + R      +   ++A   +A    G  R +  L
Sbjct: 162 IPETIKSRCQTFIFKPP-TKEQIKNYLLRILNNEKIPYEEDAVELLAQELEGGMRDSASL 220

Query: 226 LRRVRDFAEVAHAKTITRE 244
           L +   +AE    +    E
Sbjct: 221 LDQAVTYAEGKLTRKDVEE 239


>gi|84489225|ref|YP_447457.1| replication factor C small subunit [Methanosphaera stadtmanae DSM
           3091]
 gi|110287813|sp|Q2NH89|RFCS_METST RecName: Full=Replication factor C small subunit; Short=RFC small
           subunit; AltName: Full=Clamp loader small subunit
 gi|84372544|gb|ABC56814.1| RfcS [Methanosphaera stadtmanae DSM 3091]
          Length = 321

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 85/224 (37%), Gaps = 36/224 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+TL++  GQ +    LK ++E      ++L +++F G  G+GKTT A  +A+
Sbjct: 4   PWVEKYRPQTLDDVVGQEQIVGRLKRYVE-----EKSLPNIMFTGFAGVGKTTCALALAK 58

Query: 77  -----ELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEI 124
                    NF   +         +   + +            ++F+DE+  ++   ++ 
Sbjct: 59  SLLGEYWQQNFLELNASDARGIDTVRNEIKSFCKLKAVGAPFRIIFLDEVDNMTKDAQQA 118

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           L   ME +                      + I +      + +P+Q R  I  R +  +
Sbjct: 119 LRREMEMYTKT------------------SSFILSCNYSSKIIDPIQSRCAI-FRFSPIK 159

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
             ++   ++  A   G+     A   I   ++G  R +  +L+ 
Sbjct: 160 AANIIKRLKYIASEEGIEAEQSALENIVYFTQGDMRKSINILQA 203


>gi|307596342|ref|YP_003902659.1| Replication factor C [Vulcanisaeta distributa DSM 14429]
 gi|307551543|gb|ADN51608.1| Replication factor C [Vulcanisaeta distributa DSM 14429]
          Length = 342

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 52/232 (22%), Positives = 89/232 (38%), Gaps = 37/232 (15%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   +   RP  +++   Q E    +K F++        + H+LF GPPG GKTT+A  +
Sbjct: 5   ELIWVEKYRPSRIDDIIDQEEVKERIKQFLKTG-----NMPHMLFYGPPGTGKTTMALAI 59

Query: 75  ARE-----LGVNFRSTSGPVIAKAGDLAALLTNLED--------RDVLFIDEIHRLSIIV 121
           ARE        N    +         +   +               ++ +DE   ++   
Sbjct: 60  ARELYGDAWRENVLELNASDERGITTIRERVKEFARTAPMGKAPYKLVILDEADNMTSDA 119

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           ++ L   ME +                 N++RF LIA    V  + +P+Q R  +  R +
Sbjct: 120 QQALRRMMEMY----------------ANVTRFILIA--NYVSRIIDPIQSRCAM-FRFS 160

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
               + +   ++  A   G+ VT+EA   I   S+G  R A   L+     A
Sbjct: 161 PLPKDAVLGRLREIASKEGVKVTNEALEAIWDVSQGDMRKAINTLQAAAATA 212


>gi|296108938|ref|YP_003615887.1| AAA ATPase central domain protein [Methanocaldococcus infernus ME]
 gi|295433752|gb|ADG12923.1| AAA ATPase central domain protein [Methanocaldococcus infernus ME]
          Length = 483

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 48/209 (22%), Positives = 86/209 (41%), Gaps = 24/209 (11%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEA-AKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
            I   RPR+L++  G  +    LK +IE+  K + E    +L  GPPG+GKTTLA  +A 
Sbjct: 4   WIEKYRPRSLKDVVGHEKVKERLKRWIESFIKGKKEKP--ILLYGPPGVGKTTLAYALAN 61

Query: 77  ELGVNFRSTSGP-------VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE-----EI 124
           + G +    +         +    G  A   + L +R ++ +DE+  +S   +     E+
Sbjct: 62  DYGFDVIELNASDRRSREEIRRIIGQSAVSKSILGNRFIIVLDEVDGISGKEDAGGVGEL 121

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAAT----TRVGLLTNPLQDRFGIPIRL 180
           +  A E     +M      + ++K  L    LI         +  +   + ++ G+ +  
Sbjct: 122 IKIAKESKNPIIMTANDAYSPNLKNLLPHVELIELKPLKVNEIYKILKAIAEKEGLDV-- 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAAC 209
              + + LK I    A     A+ D  A 
Sbjct: 180 ---DDKVLKVIASHSAGDLRSAINDLQAL 205


>gi|297620154|ref|YP_003708259.1| Replication factor C [Methanococcus voltae A3]
 gi|297379131|gb|ADI37286.1| Replication factor C [Methanococcus voltae A3]
          Length = 314

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 52/240 (21%), Positives = 89/240 (37%), Gaps = 37/240 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP TL E  GQ E    LK ++E      +++ H+LF G PG+GKTT A  +A+
Sbjct: 4   PWVEKYRPTTLSEIVGQKEIIERLKNYVE-----KQSMPHLLFSGSPGIGKTTAALCLAK 58

Query: 77  ------------ELGVNFRSTSGPVIAKAGDLAALLT-NLEDRDVLFIDEIHRLSIIVEE 123
                       EL  +       +  K  D A           V+F+DE   L+   + 
Sbjct: 59  DLYGDDWRENFLELNSSDERGIDVIRTKVKDFARTKPIGDAPFKVIFLDESDALTSDAQN 118

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
            L   ME +                 ++ RF  I +      +  P+Q R  I  R +  
Sbjct: 119 ALRRTMEKYS----------------DICRF--ILSCNYPSKIIPPIQSRCAI-FRFSPL 159

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           + ED+   +   ++   + +    +  I   S G  R +  +L+     + V     + +
Sbjct: 160 KTEDVLDYMNYISENENITIEKSGSDAIIYVSEGDMRKSVNVLQTAAAVSNVIDEDIVYK 219


>gi|85857923|ref|YP_460125.1| DNA polymerase III subunit gamma/tau [Syntrophus aciditrophicus SB]
 gi|85721014|gb|ABC75957.1| DNA polymerase III subunit gamma/tau [Syntrophus aciditrophicus SB]
          Length = 588

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 51/290 (17%), Positives = 90/290 (31%), Gaps = 69/290 (23%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH-VLFVGPPGLGKTTLAQVVARELGVN 81
           RP+  E+  GQ      LK  I     R E + H  LF GP G+GKT++A+++A+ +   
Sbjct: 11  RPQVFEDVVGQQHVVQTLKNAI-----RQERIAHAFLFSGPRGVGKTSIARILAKAINCE 65

Query: 82  ------------------------FRSTSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                    R   G       ++  L   +          V  I
Sbjct: 66  QGPAGTPCNVCTNCREITEGISMDVREIDGASNRGIDEIRELRERIRFLPVSCRYKVYII 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H L+      L   +E+                         I ATT    +   + 
Sbjct: 126 DEVHMLTREAFNALLKTLEE------------------PPPHVVFIFATTETHKVPATIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R           +  +   +++ A+   + ++D     IA    G+ R +  +  +V  
Sbjct: 168 SRCQ-CFEFRRLSLRQIAEQLRKIAETEKIRISDAGLAWIAEAGDGSMRDSESIFDQVIS 226

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVG 281
           +A  A       E+                + D R+L  ++        G
Sbjct: 227 YAGTAIEDEAVEEL--------------LGRTDRRFLFQLSEAVLRRDAG 262


>gi|70606692|ref|YP_255562.1| replication factor C large subunit [Sulfolobus acidocaldarius DSM
           639]
 gi|73914010|sp|Q4JAB1|RFCL_SULAC RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|68567340|gb|AAY80269.1| replication factor C [Sulfolobus acidocaldarius DSM 639]
          Length = 437

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 44/218 (20%), Positives = 78/218 (35%), Gaps = 34/218 (15%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP++L+E   Q E    LK +IE+          VL  GPPG+GKTTLA+ +AR+  +  
Sbjct: 10  RPKSLQEVENQDEVKEELKKWIESWLNGEPTAKAVLLYGPPGVGKTTLAEALARDYKLEL 69

Query: 83  RSTSGPVIAKAGDLAALLTNLE--------DRDVLFIDEIHRLSIIVEEILYPAM----- 129
              +        D+  +                ++ +DEI  +    +    PA+     
Sbjct: 70  LEMNASDSRNLRDIKDVAERASISGSLFGIKGKIILLDEIDGIYSRADAGAIPAILELIE 129

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           +     ++    P   S++   +   +I                              LK
Sbjct: 130 KTKYPVILTANDPWDPSLRSLRNAVKMIELKRLGKY---------------------PLK 168

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
            +++R  +   +   DEA   I  +S G  R    +L+
Sbjct: 169 RLLKRICEKEKIVCIDEALDHIIEQSEGDARYCINMLQ 206


>gi|67478786|ref|XP_654775.1| Replication factor C subunit 4 [Entamoeba histolytica HM-1:IMSS]
 gi|56471850|gb|EAL49389.1| Replication factor C subunit 4, putative [Entamoeba histolytica
           HM-1:IMSS]
          Length = 329

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 55/236 (23%), Positives = 89/236 (37%), Gaps = 41/236 (17%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +S ++A     RP+TL++  GQ E    LK  + +       L ++LF GPPG GKTT  
Sbjct: 1   MSGQNAWSEKYRPKTLDDVQGQEEVIKLLKSSLNSG------LPNLLFFGPPGSGKTTSI 54

Query: 72  QVVARE-----LGVNFRSTSGPVIAKAGDLAALLTNLEDRDV-----------LFIDEIH 115
             VA E             +         +   L N   +DV           + +DE  
Sbjct: 55  LAVAHELFQGYFKERVLELNASNQRGIEMVRTTLKNYAMQDVTHYDGTPDYKLIILDESD 114

Query: 116 RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
            L+   +  L   MEDF       +      +   +SR            +  P+  R  
Sbjct: 115 ALTPDAQTALRRMMEDF------TKNTRFCLICNYISR------------ILPPISSRC- 155

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
           I  R +    E +   +Q   +  G +VT+EA   +++ S G  R    LL+++  
Sbjct: 156 IKFRFSALPKEIVSNRLQMICEKEGFSVTNEAIQAVSILSEGDLRYGIGLLQKLSQ 211


>gi|213962623|ref|ZP_03390884.1| DNA polymerase III, subunits gamma and tau [Capnocytophaga
           sputigena Capno]
 gi|213954618|gb|EEB65939.1| DNA polymerase III, subunits gamma and tau [Capnocytophaga
           sputigena Capno]
          Length = 363

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 59/284 (20%), Positives = 96/284 (33%), Gaps = 43/284 (15%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP++  +  GQ    + L   IE           +LF GP G+GKTT A+++A+++
Sbjct: 8   ARKYRPQSFHDVVGQQAITNTLLNAIE----NNHLAQALLFTGPRGVGKTTCARILAKKI 63

Query: 79  G-------------VNFRSTSGPVIAKAGDLAALLT------NLEDRDVLFIDEIHRLSI 119
                          N             D+  L+        +    V  IDE+H LS 
Sbjct: 64  NEQTAGVEDENDFAFNIFELDAASNNSVDDIRKLIEQVRIPPQVGKYKVYIIDEVHMLSP 123

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
                    +E+                         I ATT    +   +  R  I   
Sbjct: 124 SAFNAFLKTLEE------------------PPKHAIFILATTEKHKIIPTILSRCQIFDF 165

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
                I D++  ++  A+  G+A  DEA   IA ++ G  R A  +  RV  F+     +
Sbjct: 166 KRI-TINDIREYLKYIAQQQGIAAEDEALQIIAQKADGAMRDALSIFDRVVSFSGEKITR 224

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIE 283
             T EI +  L      K+    LD +   ++         G +
Sbjct: 225 QATSEILN-VLDYEVYFKVTDLILDNKLPELLITFNDTIAQGFD 267


>gi|327313805|ref|YP_004329242.1| DNA polymerase III subunit gamma and tau [Prevotella denticola
           F0289]
 gi|326944679|gb|AEA20564.1| DNA polymerase III, subunit gamma and tau [Prevotella denticola
           F0289]
          Length = 600

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 103/284 (36%), Gaps = 34/284 (11%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP + +   GQ    + LK  +++ K         LF GP G+GKTT A++ A+ +
Sbjct: 8   ARKYRPMSFDSVVGQQALTTTLKNAVKSGKLAHAY----LFCGPRGVGKTTCARIFAKAI 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI------IVEEILYPAMEDF 132
                +  G    +     A        ++  +D     S+      + +  + P +  +
Sbjct: 64  NCEHPTVDGEACNECESCKA-FAEGRSYNIFELDAASNNSVENIKSLMEQTRIPPQVGRY 122

Query: 133 QLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           ++ ++               ++++   +    I ATT    +   +  R  I        
Sbjct: 123 KVFIIDEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQIYDFERM-T 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           + ++ + ++  A+   +   +EA   IA ++ G  R A  +  +   F++      IT +
Sbjct: 182 VPNIISHLKNVAEKENIQYEEEALAIIAEKADGGMRDALSIFDQAASFSQ----GNITYQ 237

Query: 245 IADAALLRLAID----------KMGFDQLDLRYLTMIARNFGGG 278
                L  L  D          +   +++ +    ++ + F GG
Sbjct: 238 KVIEDLNVLDADNYFNIVSLALENKVNEIMVLLNDVLNKGFDGG 281


>gi|308160432|gb|EFO62923.1| Replication factor C, subunit 4 [Giardia lamblia P15]
          Length = 322

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 58/246 (23%), Positives = 92/246 (37%), Gaps = 42/246 (17%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           I   RPR+L+   G  E  + L+ F     A    L ++L  G PGLGKTT+A  +A ++
Sbjct: 7   IERYRPRSLDGLIGNPEILARLRYF-----AAQGNLPNILLTGGPGLGKTTIALCLANQM 61

Query: 79  GVNFRST-----SGPVIAKAGDLAALLTNLEDRDV---------LFIDEIHRLSIIVEEI 124
               RS      +        D+ A +     + V         +F+DE   ++   +++
Sbjct: 62  LGAHRSVAFLELNASDERNVSDIRAKVKTFAQKQVTLPTGIQKLVFLDECDAMTEAAQQV 121

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           L   M+D        E  S R             A   +  +  P+Q R  +   +   +
Sbjct: 122 LRRIMDD--------ETGSTR----------FCLACNNISKVIEPVQSRCCVLRIMPPTQ 163

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            E L   +Q   +  G+    EA  E+   S    R     L+ V D    A+ K IT  
Sbjct: 164 AE-LVKYLQEICEKEGVKNDTEALKELISISGNDVRSCLNSLQLVAD----ANDKVITVA 218

Query: 245 IADAAL 250
               AL
Sbjct: 219 GVQKAL 224


>gi|188588880|ref|YP_001920497.1| ATPase, AAA family [Clostridium botulinum E3 str. Alaska E43]
 gi|251778335|ref|ZP_04821255.1| ATPase, AAA family [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|188499161|gb|ACD52297.1| ATPase, AAA family [Clostridium botulinum E3 str. Alaska E43]
 gi|243082650|gb|EES48540.1| ATPase, AAA family [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 103

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 8/103 (7%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
               L+RP  +E+F GQ              K++   + + +F GPPG GKTTLA ++A+
Sbjct: 3   PLADLMRPSKIEDFVGQRHILGKNTPLYNLIKSK--KICNCIFYGPPGTGKTTLANIMAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED-----RDVLFIDEI 114
            +   F   +    A   D+  + + L++       VL+IDE+
Sbjct: 61  YVDKKFYKLNA-TTASVKDIQNITSELDNLLNYAGVVLYIDEL 102


>gi|1777932|gb|AAC45724.1| RuvB' [Treponema pallidum]
          Length = 82

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/72 (47%), Positives = 47/72 (65%)

Query: 8  LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
          +       D     LRPR L++F GQ +   NL++FI+AA+ R E+LDH+  +GPPG+GK
Sbjct: 10 VRPEAQPTDDRERALRPRLLKDFLGQEKTKRNLRLFIQAARDRNESLDHLFLIGPPGVGK 69

Query: 68 TTLAQVVARELG 79
          TTLA + A ELG
Sbjct: 70 TTLAHITACELG 81


>gi|258511810|ref|YP_003185244.1| Sigma 54 interacting domain-containing protein [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478536|gb|ACV58855.1| Sigma 54 interacting domain protein [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 558

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 57/282 (20%), Positives = 97/282 (34%), Gaps = 56/282 (19%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +      RP+ +++  GQ +    L+     A        HV+  GPPG+GKT  A+++ 
Sbjct: 56  EPLAERTRPQRIDDIIGQQDGVRALR-----AALCGPNPQHVIIYGPPGVGKTAAARLIL 110

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDV--------------------------- 108
            E      S   P  AK  +L A     ++R +                           
Sbjct: 111 EEAKRTPGSPFKP-DAKFIELDATTARFDERGIADPLIGSVHDPIYQGAGAMGIAGIPQP 169

Query: 109 ------------LFIDEIHRLSIIVEEILYPAMEDFQLDL----MVGEGPSARSVKINL- 151
                       LFIDEI  L  I    L   +ED ++ L       E  +      ++ 
Sbjct: 170 KQGAVTKAHGGVLFIDEIGELHPIQMNKLLKVLEDRKVFLESAYYSSEDTNIPVHIHDIF 229

Query: 152 -----SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDE 206
                + F L+ ATTR      P      + I       E+++ + +  A   G+ + + 
Sbjct: 230 QNGLPADFRLVGATTRSPEELPPALRSRCVEIFFRALTREEIRQVAEGAADKLGMPLEEG 289

Query: 207 AACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
            A  +A  +    R A  L++     A +    +I RE  + 
Sbjct: 290 VADTVADYATN-GRDAVNLVQMAGSLAMLEKRASIRREDIEW 330


>gi|300857391|ref|YP_003782375.1| ATP-dependent protease LA [Clostridium ljungdahlii DSM 13528]
 gi|300437506|gb|ADK17273.1| ATP-dependent protease LA [Clostridium ljungdahlii DSM 13528]
          Length = 631

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 58/262 (22%), Positives = 96/262 (36%), Gaps = 57/262 (21%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG- 79
           LLRP T +E  GQ  A  ++      +K  +    H++  GPPG+GKTT A++   E   
Sbjct: 164 LLRPETFDEIIGQERAIKSI-----LSKIASPYPQHIILYGPPGVGKTTAARIALEEAKK 218

Query: 80  ---------------------VNFRSTSGPVIAKA---------GDLAAL---------L 100
                                 + R  + P++             DLA +         +
Sbjct: 219 LKFTPFRKDAKFVEVDGSTLRWDPREITNPLLGSVHDPIYQGTKRDLAEVGVPEPKPGLV 278

Query: 101 TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL----------DLMVGEGPSARSVKIN 150
           T      VLFIDEI  L  +++  L   +ED ++          D  + +       K  
Sbjct: 279 TEAHGG-VLFIDEIGELDEMLQNKLLKVLEDKRVEFSSSYYDPDDENIPKYIKYLFEKGA 337

Query: 151 LSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACE 210
            + F LI ATTR     NP        +      ++D++ IV+  A+   +   +    E
Sbjct: 338 PADFLLIGATTREPSEINPALRSRCTEVYFEPLSVKDIQRIVEDAAEKLNIE-IESGVSE 396

Query: 211 IAMRSRGTPRIAGRLLRRVRDF 232
           +  +     R A  +L  V  +
Sbjct: 397 LISKYTIEGRKAINILSDVYGY 418


>gi|295695314|ref|YP_003588552.1| Sigma 54 interacting domain protein [Bacillus tusciae DSM 2912]
 gi|295410916|gb|ADG05408.1| Sigma 54 interacting domain protein [Bacillus tusciae DSM 2912]
          Length = 561

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 66/299 (22%), Positives = 98/299 (32%), Gaps = 64/299 (21%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           R  S  +     +RP+  ++  GQ      L+     A        HV+  GPPG+GKT 
Sbjct: 52  RETSLTEPLNERVRPQRFQDIVGQSAGIKALR-----AALCGPHPQHVILYGPPGVGKTA 106

Query: 70  LAQVV---ARELGVNFRSTSGPVIA-----KAGDLAAL---------------------- 99
            A++V   ARE   +      P I         D   +                      
Sbjct: 107 AARLVLEEARENPKSPFRPEAPFIEVDATTVRFDERGIADPLIGSVHDPIYQGAGAMGAA 166

Query: 100 ---------LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN 150
                    +T      +LFIDEI  L  I    L   +ED ++ L   E    R     
Sbjct: 167 GVPQPKPGAVTRAHGG-ILFIDEIGELHPIQMNKLLKVLEDRRVLL---ESAYYRPGDSA 222

Query: 151 LSR-------------FTLIAATTR-VGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA 196
           +               F LI ATTR    L   L+ R         Y  ++L  I +R A
Sbjct: 223 IPPHIHDLFQNGLPADFRLIGATTRPAHELPPALRSRCVEIYFRPLY-PDELAQIAERAA 281

Query: 197 KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255
           +  G+ +  EAA  +A  + G  R A  L++      +      I  E  +  +     
Sbjct: 282 RRIGVEIPPEAAQAVAGYA-GNGRDAVNLVQIAAGAVQNEGRDRIEPEDVEWVVQVAGY 339


>gi|325859977|ref|ZP_08173104.1| DNA polymerase III, subunit gamma and tau [Prevotella denticola
           CRIS 18C-A]
 gi|325482503|gb|EGC85509.1| DNA polymerase III, subunit gamma and tau [Prevotella denticola
           CRIS 18C-A]
          Length = 600

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 103/284 (36%), Gaps = 34/284 (11%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP + +   GQ    + LK  +++ K         LF GP G+GKTT A++ A+ +
Sbjct: 8   ARKYRPMSFDSVVGQQALTTTLKNAVKSGKLAHAY----LFCGPRGVGKTTCARIFAKAI 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI------IVEEILYPAMEDF 132
                +  G    +     A        ++  +D     S+      + +  + P +  +
Sbjct: 64  NCEHPTVDGEACNECESCKA-FAEGRSYNIFELDAASNNSVENIKSLMEQTRIPPQVGRY 122

Query: 133 QLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           ++ ++               ++++   +    I ATT    +   +  R  I        
Sbjct: 123 KVFIIDEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQIYDFERM-T 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           + ++ + ++  A+   +   +EA   IA ++ G  R A  +  +   F++      IT +
Sbjct: 182 VPNIISHLKNVAEKENIQYEEEALAIIAEKADGGMRDALSIFDQAASFSQ----GNITYQ 237

Query: 245 IADAALLRLAID----------KMGFDQLDLRYLTMIARNFGGG 278
                L  L  D          +   +++ +    ++ + F GG
Sbjct: 238 KVIEDLNVLDADNYFNIVSLALENKVNEIMVLLNDVLNKGFDGG 281


>gi|307298980|ref|ZP_07578782.1| DNA polymerase III, subunits gamma and tau [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306915405|gb|EFN45790.1| DNA polymerase III, subunits gamma and tau [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 485

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 52/233 (22%), Positives = 88/233 (37%), Gaps = 23/233 (9%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVV 74
           +      RPR   E  GQ +    L   IE  K     L H  +F G  G GKTT A+++
Sbjct: 3   EVLYRKYRPRNFNELVGQDQVKEILGKAIEKNK-----LSHAYIFSGSRGTGKTTSARIL 57

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAM 129
           A+   +N  S          D    + +    DV+ +D      I  +  I + + Y  +
Sbjct: 58  AK--MLNCLSEGSEKPCGVCDSCKAIDSSSHMDVVELDAASYRGIDEIRKIRDAVSYRPV 115

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                  ++ E             ++++    R   I ATT +  +   +  R  I    
Sbjct: 116 MGKFKVYIIDEFHMLTREAFNALLKTLEEPPDRVVFILATTNLEKVPETILSRCQI-FYF 174

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                ED+ T ++R A+   L   ++A   I+  + G  R A  L+ RV  ++
Sbjct: 175 KPLREEDIVTYLERIARAEELQYDEKALRYISKAAHGGMRDAVNLMERVISYS 227


>gi|242372721|ref|ZP_04818295.1| DNA-directed DNA polymerase [Staphylococcus epidermidis M23864:W1]
 gi|242349638|gb|EES41239.1| DNA-directed DNA polymerase [Staphylococcus epidermidis M23864:W1]
          Length = 560

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 51/259 (19%), Positives = 95/259 (36%), Gaps = 25/259 (9%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           + RP++ ++  GQ      L+  I   K         +F GP G GKT++A+V A+ +  
Sbjct: 1   MYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAY----IFSGPRGTGKTSIAKVFAKAINC 56

Query: 81  NFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLD 135
                  P      ++   +T   + DV+ ID      +  +  I +++ Y   E     
Sbjct: 57  LNSDDGEPCNEC--EICRGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKV 114

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             ++++   +    I ATT    +   +  R           ++
Sbjct: 115 YIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISR-AQRFDFKAISMD 173

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA----HAKTIT 242
            +   ++  A    L   + A   IA  S G  R A  ++ +   F E       A  +T
Sbjct: 174 QIVDRLKFVADSQSLDYDEAALEFIAKASEGGMRDALSIMDQAIAFGEEKLTLQDALNVT 233

Query: 243 REIADAALLRLAIDKMGFD 261
             + +AAL  L  D +  D
Sbjct: 234 GSVDEAALNELFKDVVNGD 252


>gi|256820706|ref|YP_003141985.1| DNA polymerase III, subunits gamma and tau [Capnocytophaga ochracea
           DSM 7271]
 gi|256582289|gb|ACU93424.1| DNA polymerase III, subunits gamma and tau [Capnocytophaga ochracea
           DSM 7271]
          Length = 569

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 58/284 (20%), Positives = 95/284 (33%), Gaps = 43/284 (15%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP++  +  GQ    + L   IE           +LF GP G+GKTT A+++A+++
Sbjct: 8   ARKYRPQSFRDVVGQQAITNTLLNAIENNHLAQA----LLFTGPRGVGKTTCARILAKKI 63

Query: 79  G-------------VNFRSTSGPVIAKAGDLAALLT------NLEDRDVLFIDEIHRLSI 119
                          N             D+  L+        +    V  IDE+H LS 
Sbjct: 64  NEQTSGVEDENDFAFNVFELDAASNNSVDDIRKLIEQVRIPPQVGKYKVYIIDEVHMLST 123

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
                    +E+                         I ATT    +   +  R  I   
Sbjct: 124 AAFNAFLKTLEE------------------PPKHAIFILATTEKHKIIPTILSRCQIFDF 165

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
                I D++  ++  A+  G+   DEA   IA ++ G  R A  +  RV  F+     +
Sbjct: 166 KRI-TINDIREYLKYIAEQQGIEAEDEALQIIAQKADGAMRDALSIFDRVVSFSGEKITR 224

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIE 283
             T EI +  L      K+    LD +   ++         G +
Sbjct: 225 QATSEILN-VLDYEVYFKVTDLILDNKLPELLIAFNDSIAQGFD 267


>gi|330507468|ref|YP_004383896.1| replication factor C small subunit [Methanosaeta concilii GP-6]
 gi|328928276|gb|AEB68078.1| replication factor C small subunit [Methanosaeta concilii GP-6]
          Length = 323

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 87/243 (35%), Gaps = 37/243 (15%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           +E+  I   RP  L++  GQ E    LK +++        L H+LF GPPG+GKT  +  
Sbjct: 4   KEEIWIEKYRPERLDDIVGQDEIVRRLKSYVK-----TRNLPHLLFSGPPGVGKTAASIS 58

Query: 74  VARELGVNFRSTSGPVIA------------KAGDLAALLTNLE-DRDVLFIDEIHRLSII 120
           + +E+       +   +             K  D A +    E D  V+F+DE   L+  
Sbjct: 59  IVKEIFGETWRNNFIELNASDERGIDIIRHKVKDFARMAPLGEADFKVIFLDEADALTND 118

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            +  L   ME +                        I +      +  P+Q R  +  R 
Sbjct: 119 AQSALRRTMERYSATT------------------RFILSCNYSSKIIEPIQSRCAV-YRF 159

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
                E +   ++  A   GL V+D     I   + G  R A   L+      +    +T
Sbjct: 160 KPLSPEAVTKRIKFIASEEGLRVSDGGLSAIEYVAGGDMRKAINALQAAALLGDEVDEET 219

Query: 241 ITR 243
           I +
Sbjct: 220 IYQ 222


>gi|260591457|ref|ZP_05856915.1| DNA polymerase III, gamma and tau subunit [Prevotella veroralis
           F0319]
 gi|260536488|gb|EEX19105.1| DNA polymerase III, gamma and tau subunit [Prevotella veroralis
           F0319]
          Length = 604

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 43/254 (16%), Positives = 92/254 (36%), Gaps = 24/254 (9%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP + +   GQ    + LK  +++ K         LF GP G+GKTT A++ A+ +
Sbjct: 8   ARKYRPMSFDSVVGQQALTTTLKNAVKSGKLAHAY----LFCGPRGVGKTTCARIFAKAI 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI------IVEEILYPAMEDF 132
                +  G    +     A  T     ++  +D     S+      + +  + P +  +
Sbjct: 64  NCEHPTKEGEACNECESCKA-FTEGRSYNIFELDAASNNSVENIKTLMEQTRIPPQVGRY 122

Query: 133 QLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           ++ ++               ++++   +    I ATT    +   +  R  I        
Sbjct: 123 KVFIIDEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQIYDFERM-T 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           + ++   ++  A+   +   ++A   IA ++ G  R A  +  +   F++      IT +
Sbjct: 182 VPNIINHLKAVAEKENIQYEEQALNIIAEKADGGMRDALSIFDQAASFSQ----GNITYQ 237

Query: 245 IADAALLRLAIDKM 258
                L  L  D  
Sbjct: 238 KVIEDLNVLDEDNY 251


>gi|187777395|ref|ZP_02993868.1| hypothetical protein CLOSPO_00951 [Clostridium sporogenes ATCC
           15579]
 gi|187774323|gb|EDU38125.1| hypothetical protein CLOSPO_00951 [Clostridium sporogenes ATCC
           15579]
          Length = 639

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 58/269 (21%), Positives = 94/269 (34%), Gaps = 57/269 (21%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG- 79
           LLRP +  E  GQ     +L      +K  +    H++  GPPG+GKT+ A++   E+  
Sbjct: 172 LLRPASFSEIIGQERPIKSL-----LSKIASPYPQHIILYGPPGVGKTSAARLALEEVKK 226

Query: 80  ---------------------VNFRSTSGPVIAKA---------GDLAA---------LL 100
                                 + R  + P++             DLA          L+
Sbjct: 227 LKYTPFYQESKFVEVDGTTLRWDPREITNPLLGSVHDPIYQGSKRDLAETGIPEPKLGLV 286

Query: 101 TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV------GEGPSARSVKIN---- 150
           T      VLFIDEI  L  +++  L   +ED +++          E        +     
Sbjct: 287 TEAHGG-VLFIDEIGELDDMLQNKLLKVLEDKRVEFSSSYYDPDDENTPKYIKHLFENGA 345

Query: 151 LSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACE 210
            + F LI ATTR     NP        +       +D++ IV   A    + + D    +
Sbjct: 346 PADFVLIGATTREPSEINPALRSRCAEVFFEPLSSKDIEKIVINAADKLNIILED-GVAQ 404

Query: 211 IAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
              R     R A  +L  V  +A   + +
Sbjct: 405 TISRYTIEGRKAVNILSDVYGYALYKNKE 433


>gi|86130548|ref|ZP_01049148.1| DNA polymerase III subunit gamma/tau [Dokdonia donghaensis MED134]
 gi|85819223|gb|EAQ40382.1| DNA polymerase III subunit gamma/tau [Dokdonia donghaensis MED134]
          Length = 643

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 56/258 (21%), Positives = 89/258 (34%), Gaps = 45/258 (17%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T ++  GQ    + L    E A         +LF GP G+GKT+ A+++A+++
Sbjct: 8   ARKYRPTTFKDVVGQQAITNTL----ENAIQNNHLAQALLFCGPRGVGKTSCARILAKQI 63

Query: 79  G------------VNFRSTSGPVIAKAGDLAALLT------NLEDRDVLFIDEIHRLSII 120
                         N             D+ +L+        +    V  IDE+H LS  
Sbjct: 64  NTDENTSPDEDFAFNVFELDAASNNSVDDIRSLIDQVRIPPQVGKYKVYIIDEVHMLSAA 123

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                   +E+                         I ATT    +   +  R  I    
Sbjct: 124 AFNAFLKTLEE------------------PPKHAIFILATTEKHKIIPTILSRCQIFDFK 165

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
                +  K +VQ  A+  G+   +EA   IA ++ G  R A  +  RV  F+     KT
Sbjct: 166 RITVADARKHLVQIAAEE-GIEADEEALHIIAQKADGAMRDALSIFDRVVSFS----GKT 220

Query: 241 ITREIADAALLRLAIDKM 258
           ++R+     L  L  D  
Sbjct: 221 LSRKAVTENLNVLDYDTY 238


>gi|312897409|ref|ZP_07756833.1| DNA polymerase III, subunit gamma and tau [Megasphaera
           micronuciformis F0359]
 gi|310621470|gb|EFQ05006.1| DNA polymerase III, subunit gamma and tau [Megasphaera
           micronuciformis F0359]
          Length = 627

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 65/321 (20%), Positives = 114/321 (35%), Gaps = 39/321 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T E+  GQ      L+  +E  K         LF GP G GKT+ A++ A+ L    
Sbjct: 11  RPKTFEDVVGQGRIMKTLQQAVENDKVAHAY----LFSGPRGTGKTSTAKIFAKALNCVH 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHR-----LSIIVEEILYPAMEDFQLDLM 137
             TS P      D+   +T+ E  DV+ ID         +  + E + +   E  +   +
Sbjct: 67  GPTSHPCNEC--DVCKHITSGESLDVVEIDAASNRSIEDIRQLRETVKFMPTEGHKKIYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT    +   +  R            +D+
Sbjct: 125 IDEVHMLTTEAFNALLKTLEEPPEHVVFILATTEPERIPMTILSRCQ-RYDFRRITADDI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  +   A    + +  +AA  IA+R+ G  R A  LL +      V +      E    
Sbjct: 184 QKRLAYIADKEEIDLKPDAARMIAVRADGGMRDALSLLDQC-----VGNGGRCVDEEIV- 237

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV---GIETISAGLSEPRDAIEDLIEPYMI 305
                  D +G    D  +    A   G G     GI+ +     E ++ + D++  ++ 
Sbjct: 238 ------RDLLGLVGKDWLFSMTAALFSGRGETLIEGIDEVVQAGKEVQNVLADMV-MHLR 290

Query: 306 QQGFIQRTPRGRLLMPIAWQH 326
                Q  P+       A+  
Sbjct: 291 ALMLYQAAPKSE--TLAAYAD 309


>gi|222097843|ref|YP_002531900.1| ATPase, AAA family [Bacillus cereus Q1]
 gi|221241901|gb|ACM14611.1| ATPase, AAA family [Bacillus cereus Q1]
          Length = 340

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 56/237 (23%), Positives = 88/237 (37%), Gaps = 38/237 (16%)

Query: 103 LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAAT 160
           +    VL +DE+HRL    ++ L P +E   L L+      P         SR       
Sbjct: 1   MHRHLVLILDEVHRLDKAKQDFLLPHLESGLLTLIGATTSNPFHAINSAIRSRC------ 54

Query: 161 TRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPR 220
            ++  L    +D   I ++    + E       +G     + VT EA    A  S G  R
Sbjct: 55  -QIFELHALTEDDLLIGLKRALEDKE-------KGLGEYDVTVTPEALHHFANASGGDMR 106

Query: 221 IAGRLLRRVR--DFAEVAHAKTITREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFG 276
            A   L       F     A  IT EIA+  L + +   DK G    D+  L+   ++  
Sbjct: 107 SAYNALELAVLSSFTTDDKAAEITLEIAEECLQKKSFVHDKGGDAHYDV--LSAFQKSVR 164

Query: 277 GGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           G  V              A+  L    +I+ G +Q    GR L+ +A++ +G+  P 
Sbjct: 165 GSDV------------NAALHYLAR--LIEAGDLQSI--GRRLLIMAYEDIGLASPQ 205


>gi|254579519|ref|XP_002495745.1| ZYRO0C02090p [Zygosaccharomyces rouxii]
 gi|238938636|emb|CAR26812.1| ZYRO0C02090p [Zygosaccharomyces rouxii]
          Length = 338

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 44/242 (18%), Positives = 81/242 (33%), Gaps = 37/242 (15%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           +    +   RP +L++  GQ E  + ++ F+E  K     L H+LF GPPG GKT+    
Sbjct: 10  ENLPWVEKYRPESLDDVYGQTEVITTIRKFLETGK-----LPHLLFYGPPGTGKTSSIIA 64

Query: 74  VAREL------------GVNFRSTSGPVIAKAGDLAALLTNLEDR-DVLFIDEIHRLSII 120
           +ARE+              +       V  +  D A+          ++ +DE   ++  
Sbjct: 65  LAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNA 124

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            +  L   +E +       +                         LT  L  R     R 
Sbjct: 125 AQNALRRIIERY------TKNTRF------------CILANYAHKLTPALLSRC-TRFRF 165

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
                E ++  +        L +T+ A   +   SRG  R    +L+  +   +  + + 
Sbjct: 166 QPLPREAIQRRISNVLVREQLQMTESAENALLDLSRGDMRRVLNVLQACKAVIDQPNVEI 225

Query: 241 IT 242
             
Sbjct: 226 TD 227


>gi|270290235|ref|ZP_06196460.1| ATPase [Pediococcus acidilactici 7_4]
 gi|270281016|gb|EFA26849.1| ATPase [Pediococcus acidilactici 7_4]
          Length = 345

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 41/244 (16%), Positives = 78/244 (31%), Gaps = 41/244 (16%)

Query: 97  AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRF 154
           A L   +  + ++F+DEIHR +   ++   P +E   + L+    E PS       LSR 
Sbjct: 4   AELDREIGQKTLVFVDEIHRFNKSQQDAFLPYVEKGSIILIGATTENPSFEVNSALLSRC 63

Query: 155 TLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMR 214
            +         +  PL+    + +  N                   + + +     IA  
Sbjct: 64  KV--------FVLKPLEQGDLVKLIQNVISNSQ-------AFDNQKIKIEENQINAIANF 108

Query: 215 SRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL---LRLAIDKMGFDQLDLRYLTMI 271
           + G  R A  +L       +         +     L     +  DK G +  ++      
Sbjct: 109 ADGDARKALNILEMAVLNGKKQGEAITITKDDLGQLISRKFVLYDKNGEEHYNI------ 162

Query: 272 ARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGI 329
                        ISA     R++  D    ++ +       P    R L+  A + +G+
Sbjct: 163 -------------ISALHKSMRNSDVDAAIYWLSRMLEGGEDPLYIARRLVRFASEDVGL 209

Query: 330 DIPH 333
             P+
Sbjct: 210 ADPN 213


>gi|242243365|ref|ZP_04797810.1| DNA-directed DNA polymerase [Staphylococcus epidermidis W23144]
 gi|242233314|gb|EES35626.1| DNA-directed DNA polymerase [Staphylococcus epidermidis W23144]
          Length = 568

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 53/263 (20%), Positives = 95/263 (36%), Gaps = 25/263 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RP++ ++  GQ      L+  I   K         +F GP G GKT++A+V A+
Sbjct: 5   ALYRMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAY----IFSGPRGTGKTSIAKVFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +         P    A  +   +T   + DV+ ID      +  +  I +++ Y   E 
Sbjct: 61  AINCLNSDNGEPCNECA--ICKGITQGTNNDVIEIDAASNNGVDEIRNIRDKVKYAPSES 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++   +    I ATT    +   +  R         
Sbjct: 119 KYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISR-AQRFDFKA 177

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA----HA 238
              + +   ++  A    L   D A   IA  S G  R A  ++ +   F +       A
Sbjct: 178 ISSDQIIDRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIMDQAIAFGDERLTLQDA 237

Query: 239 KTITREIADAALLRLAIDKMGFD 261
             +T  + +AAL  L  D +  D
Sbjct: 238 LNVTGSVDEAALNELFNDIVKSD 260


>gi|146304797|ref|YP_001192113.1| replication factor C large subunit [Metallosphaera sedula DSM 5348]
 gi|145703047|gb|ABP96189.1| replication factor C large subunit [Metallosphaera sedula DSM 5348]
          Length = 443

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 83/223 (37%), Gaps = 24/223 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+TL++   Q +    L+ +I++    + +   V+  GPPG GKT+LA  +A 
Sbjct: 4   PWVVKYRPKTLDDVENQEDVKDELRSWIDSWLKGSPSSTAVMLYGPPGTGKTSLAIALAN 63

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE--------DRDVLFIDEIHRLSIIVEEILYPA 128
              +    T+         L A++               ++F+DE+  +    +   Y A
Sbjct: 64  TYKLELVETNASDTRNLTSLRAIVERASISGSLFGIRGKLIFLDEVDGIQPKQD---YGA 120

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +      +   + P             L+AA          L++   +       +I  +
Sbjct: 121 VSAILEIIKNTKYP------------ILMAANDPWNPNLRDLRNAVKMIEVKKLGKI-AM 167

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
           + ++++      +   D A  +I   S G  R A   L+ + +
Sbjct: 168 RRLLKKICSGEKIKCEDNALDQIIEASDGDSRYAINFLQSIAE 210


>gi|126459198|ref|YP_001055476.1| replication factor C small subunit [Pyrobaculum calidifontis JCM
           11548]
 gi|126248919|gb|ABO08010.1| replication factor C small subunit [Pyrobaculum calidifontis JCM
           11548]
          Length = 324

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 60/252 (23%), Positives = 98/252 (38%), Gaps = 42/252 (16%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
            E       RPR+ EE     E  + L+ F++A       L H+LF GPPG GKTT+A V
Sbjct: 2   SELFWFEKYRPRSFEEVVDLEEVKARLREFVKAG-----NLPHLLFYGPPGTGKTTMALV 56

Query: 74  VARE-----LGVNFRSTSGPVIAKAGDLAALLTNLED--------RDVLFIDEIHRLSII 120
           +ARE        N    +       G +   +               ++ +DE   ++  
Sbjct: 57  LARELYGEYWRENTLELNASDERGIGVIRERVKEFARTAPVGKAPFKLVILDEADNMTSD 116

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            ++ L   ME                +    +RF L+A    V  +  P+Q R  + IR 
Sbjct: 117 AQQALRRIME----------------IYAQNTRFILLA--NYVSNIIEPIQSRV-VMIRF 157

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           N    E + + ++  A+  G+ V+D+A   I   ++G  R A   L+          ++ 
Sbjct: 158 NPLPKEAVISRLRFIAENEGVKVSDDALEAIYEFTQGDMRKAINALQVAASV-----SRE 212

Query: 241 ITREIADAALLR 252
           +T E    AL  
Sbjct: 213 VTEEEVAKALGM 224


>gi|15669074|ref|NP_247879.1| replication factor C large subunit [Methanocaldococcus jannaschii
           DSM 2661]
 gi|42559434|sp|Q58294|RFCL_METJA RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|1591562|gb|AAB98888.1| activator 1 (replication factor C), 53 KD subunit
           [Methanocaldococcus jannaschii DSM 2661]
          Length = 516

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 42/209 (20%), Positives = 86/209 (41%), Gaps = 22/209 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           + +   RP++L++  G  +    LK +IE +  + E    +L VGPPG GKTTLA  +A 
Sbjct: 3   SWVEKYRPKSLKDVAGHEKVKEKLKTWIE-SYLKGETPKPILLVGPPGCGKTTLAYALAN 61

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVE----EIL 125
           + G      +      +  +  ++ +          + ++ +DE+  +S   +      L
Sbjct: 62  DYGFEVIELNASDKRNSSAIKKVVGHAATSSSIFGKKFLIVLDEVDGISGKEDAGGVSEL 121

Query: 126 YPAMEDFQLDLMVGEG-PSARSVKINLSRFTLIAA----TTRVGLLTNPLQDRFGIPIRL 180
              ++  +  +++      A S++  L    +I      T  V  +   + ++ G+ +  
Sbjct: 122 IKVIKKAKNPIILTANDAYAPSIRSLLPYVEVIQLNPVHTNSVYKVLKKIAEKEGLDV-- 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAAC 209
              + + LK I Q  A     A+ D  A 
Sbjct: 180 ---DDKTLKMIAQHSAGDLRSAINDLEAL 205


>gi|254490491|ref|ZP_05103677.1| DNA polymerase III, subunits gamma and tau, putative [Methylophaga
           thiooxidans DMS010]
 gi|224464235|gb|EEF80498.1| DNA polymerase III, subunits gamma and tau, putative [Methylophaga
           thiooxydans DMS010]
          Length = 569

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 66/323 (20%), Positives = 105/323 (32%), Gaps = 65/323 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH-VLFVGPPGLGKTTLAQVVARELGVN 81
           RP++ EE  GQ      L+  I         L H  LF G  G+GKTTLA++ A+ L   
Sbjct: 11  RPKSFEEVVGQQHV---LRALING--LDQNRLHHAFLFSGTRGVGKTTLARIFAKSLNCE 65

Query: 82  FRSTS------------------------GPVIAKAGDLAALLTNLE------DRDVLFI 111
              +S                             K  D   LL N++         V  I
Sbjct: 66  QGVSSTPCGVCQSCTEVDSGRFVDLIEVDAASRTKVDDTRELLDNVQYAPSQGRYKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSTSSFNALLKTLEE------------------PPPHVKFLFATTDPQKLPVTIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L   E+  +   ++   +   +    EA  ++A  + G+ R A  LL    D
Sbjct: 168 SRC-LQFNLRRLELTQISDHLRYLLEQETIKAEPEALEQLARAADGSMRDALSLL----D 222

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
            A       +T E     L  ++ D++      +  L  + +  G   +      A L  
Sbjct: 223 QAIAFGGGEVTSESVFQMLGSISQDQL------ILILDALLKQDGKALLAQSAELAALGR 276

Query: 292 PRDAIEDLIEPYMIQQGFIQRTP 314
               + D +   + Q   +Q  P
Sbjct: 277 DFHVVFDFLLSALQQIATLQLVP 299


>gi|256844521|ref|ZP_05550007.1| DNA polymerase III [Lactobacillus crispatus 125-2-CHN]
 gi|256613599|gb|EEU18802.1| DNA polymerase III [Lactobacillus crispatus 125-2-CHN]
          Length = 601

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 59/306 (19%), Positives = 102/306 (33%), Gaps = 33/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPRT +   GQ      LK  I     R +     LF GP G GKT+ A++ A+ L    
Sbjct: 11  RPRTFDSVIGQEAITDTLKNAI----KRGKVSHAFLFAGPRGTGKTSCAKIFAKALNCTN 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P    A  +AA   ++   D++ ID      +  +  I +++ Y   E      +
Sbjct: 67  LQDGEPCNECANCIAADQGSMS--DIMEIDAASNNGVDEIREIRDKVKYAPTEGKYKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT +  +   +  R            EDL
Sbjct: 125 IDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRI-SKEDL 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +   D+A   IA  + G  R A  +L ++  +              D 
Sbjct: 184 EKRMKYILDQENIKYEDKALAVIAQVADGGMRDALSILDQLLSY-------EKESVNYDD 236

Query: 249 ALLRLAI-DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           AL      D+   +    + L  +     G  + +             I D I     + 
Sbjct: 237 ALQITGFADRENIE----KILLALLNQDAGQALQLTQDELAKGASSKNILDEIIDLTTKS 292

Query: 308 GFIQRT 313
             I +T
Sbjct: 293 LLIVKT 298


>gi|16079873|ref|NP_390699.1| LonB ATP-dependent protease [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221310761|ref|ZP_03592608.1| Lon-like ATP-dependent protease [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221315086|ref|ZP_03596891.1| Lon-like ATP-dependent protease [Bacillus subtilis subsp. subtilis
           str. NCIB 3610]
 gi|221320005|ref|ZP_03601299.1| Lon-like ATP-dependent protease [Bacillus subtilis subsp. subtilis
           str. JH642]
 gi|221324287|ref|ZP_03605581.1| Lon-like ATP-dependent protease [Bacillus subtilis subsp. subtilis
           str. SMY]
 gi|1708857|sp|P42425|LON2_BACSU RecName: Full=Lon protease 2; AltName: Full=ATP-dependent protease
           La 2
 gi|1142617|gb|AAA84744.1| Lon-like protease [Bacillus subtilis subsp. subtilis str. 168]
 gi|1770077|emb|CAA99539.1| ATP-dependent Lon protease [Bacillus subtilis]
 gi|2635286|emb|CAB14781.1| LonB ATP-dependent protease [Bacillus subtilis subsp. subtilis str.
           168]
 gi|291485236|dbj|BAI86311.1| Lon-like ATP-dependent protease [Bacillus subtilis subsp. natto
           BEST195]
          Length = 552

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 61/296 (20%), Positives = 107/296 (36%), Gaps = 57/296 (19%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M++   + R +S  +     +RP++ ++  GQ +    LK     A        HV+  G
Sbjct: 44  MEQLRKM-RAISLSEPLSEKVRPKSFKDIVGQEDGIKALK-----AALCGPNPQHVIVYG 97

Query: 62  PPGLGKTTLAQVV---ARELGVNFRSTSG-------------------PVIAKAGD---- 95
           PPG+GKT  A++V   A++   +                         P+I    D    
Sbjct: 98  PPGVGKTAAARLVLEEAKKHKQSPFKEQAVFVELDATTARFDERGIADPLIGSVHDPIYQ 157

Query: 96  -------------LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL----MV 138
                            +T+     VLFIDEI  L  I    +   +ED ++ L      
Sbjct: 158 GAGAMGQAGIPQPKQGAVTHAHGG-VLFIDEIGELHPIQMNKMLKVLEDRKVFLDSAYYS 216

Query: 139 GEGPSARSVKINL------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            E     +   ++      + F LI ATTR+     P      + +     E ++LKT+ 
Sbjct: 217 EENTQIPNHIHDIFQNGLPADFRLIGATTRMPNEIPPAIRSRCLEVFFRELEKDELKTVA 276

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  A      +++E    +   +R   R A  +++     A   + K IT E  + 
Sbjct: 277 KTAADKIEKNISEEGLDLLTSYTRN-GREAVNMIQIAAGMAVTENRKDITIEDIEW 331


>gi|149238019|ref|XP_001524886.1| activator 1 40 kDa subunit [Lodderomyces elongisporus NRRL YB-4239]
 gi|146451483|gb|EDK45739.1| activator 1 40 kDa subunit [Lodderomyces elongisporus NRRL YB-4239]
          Length = 377

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 82/233 (35%), Gaps = 21/233 (9%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE- 77
           +   RP  LEE  GQ +  + ++ F+E  K     L H+LF GPPG GKT+    +ARE 
Sbjct: 55  VEKYRPENLEEVYGQGDIVNTVRRFVETGK-----LPHLLFYGPPGTGKTSTIVALAREI 109

Query: 78  ----LGVNFRSTSGPVIAKAGDLAALLTN-LEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
                       +         +   + +    R +         S    +     +++ 
Sbjct: 110 YGPNYKNMVLELNASDDRGIDVVRNQIKSFASTRQIF-------TSASSPQFKLIILDEA 162

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
                V +    R ++                 L   L  R     R +  + E +++ +
Sbjct: 163 DAMTSVAQNSLRRIIEKFTKNCRFCILANYSHKLNPALISRC-TRFRFHPIDEEAIRSRI 221

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
                   + +T +A   +   S+G  R +  +L+  +  A V   +TI  ++
Sbjct: 222 NNVIIKEKVDITPDALNALLHLSQGDMRRSLNVLQACK--AAVNDDETIDIDM 272


>gi|319399737|gb|EFV87985.1| DNA polymerase III, subunits gamma and tau [Staphylococcus
           epidermidis FRI909]
          Length = 568

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 53/263 (20%), Positives = 95/263 (36%), Gaps = 25/263 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RP++ ++  GQ      L+  I   K         +F GP G GKT++A+V A+
Sbjct: 5   ALYRMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAY----IFSGPRGTGKTSIAKVFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +         P    A  +   +T   + DV+ ID      +  +  I +++ Y   E 
Sbjct: 61  AINCLNSDDGEPCNECA--ICKGITQGTNNDVIEIDAASNNGVDEIRNIRDKVKYAPSES 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++   +    I ATT    +   +  R         
Sbjct: 119 KYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISR-AQRFDFKA 177

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA----HA 238
              + +   ++  A    L   D A   IA  S G  R A  ++ +   F +       A
Sbjct: 178 ISSDQIIDRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIMDQAIAFGDERLTLQDA 237

Query: 239 KTITREIADAALLRLAIDKMGFD 261
             +T  + +AAL  L  D +  D
Sbjct: 238 LNVTGSVDEAALNELFNDIVKSD 260


>gi|314935127|ref|ZP_07842480.1| DNA polymerase III, gamma and tau subunits [Staphylococcus hominis
           subsp. hominis C80]
 gi|313656462|gb|EFS20201.1| DNA polymerase III, gamma and tau subunits [Staphylococcus hominis
           subsp. hominis C80]
          Length = 569

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 83/234 (35%), Gaps = 21/234 (8%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RP++  +  GQ      L+  I   K         +F GP G GKT++A+V A+
Sbjct: 5   ALYRMFRPQSFSDVVGQEHVTKTLRNAISKGKQSHAY----IFSGPRGTGKTSIAKVFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +         P    A  +   +T   + DV+ ID      +  +  I +++ Y   E 
Sbjct: 61  AINCLNPHDGEPCNECA--ICKGITQGTNGDVIEIDAASNNGVDEIRNIRDKVKYAPSES 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++   +    I ATT    +   +  R         
Sbjct: 119 KYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISR-AQRFDFKA 177

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
              E +   ++  A+   L   + A   IA  S G  R A  ++ +   F +  
Sbjct: 178 ISTEQIVERLRFVAQEQSLDYEEAALEFIAKASEGGMRDALSIMDQAIAFGDEH 231


>gi|329734326|gb|EGG70640.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
           epidermidis VCU028]
          Length = 568

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 53/263 (20%), Positives = 95/263 (36%), Gaps = 25/263 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RP++ ++  GQ      L+  I   K         +F GP G GKT++A+V A+
Sbjct: 5   ALYRMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAY----IFSGPRGTGKTSIAKVFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +         P    A  +   +T   + DV+ ID      +  +  I +++ Y   E 
Sbjct: 61  AINCLNSDDGEPCNECA--ICKGITQGTNNDVIEIDAASNNGVDEIRNIRDKVKYAPSES 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++   +    I ATT    +   +  R         
Sbjct: 119 KYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISR-AQRFDFKA 177

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA----HA 238
              + +   ++  A    L   D A   IA  S G  R A  ++ +   F +       A
Sbjct: 178 ISSDQIIDRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIMDQAIAFGDERLILQDA 237

Query: 239 KTITREIADAALLRLAIDKMGFD 261
             +T  + +AAL  L  D +  D
Sbjct: 238 LNVTGSVDEAALNELFNDIVKSD 260


>gi|296421403|ref|XP_002840254.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295636469|emb|CAZ84445.1| unnamed protein product [Tuber melanosporum]
          Length = 372

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 77/228 (33%), Gaps = 12/228 (5%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           +++ ++    +   RP+ L + + Q    S LK  ++++      L H+LF GPPG GKT
Sbjct: 27  AKDPNRPVPWVEKYRPKNLNDVSAQDHTISVLKRTLQSS-----NLPHMLFYGPPGTGKT 81

Query: 69  TLAQVVARE------LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           +    +A+E      +       +         +   + N     V         +    
Sbjct: 82  STVLALAKELYGPELMKSRVLELNASDERGISIVREKVKNFARITVSTASSTQSSNYPCP 141

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                 +++        +    R+++              V  + +PL  R     R   
Sbjct: 142 PYKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCS-KFRFKP 200

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
            + E+ K  ++  AK+  +   D     +   S G  R A   L+   
Sbjct: 201 LDEENAKLRLEEIAKMENVEYEDGVIDALIKVSEGDLRKAITYLQSAA 248


>gi|27469225|ref|NP_765862.1| DNA polymerase III gamma and tau subunits [Staphylococcus
           epidermidis ATCC 12228]
 gi|57866110|ref|YP_187710.1| DNA polymerase III, gamma and tau subunits [Staphylococcus
           epidermidis RP62A]
 gi|251811247|ref|ZP_04825720.1| DNA-directed DNA polymerase [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|282874603|ref|ZP_06283485.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
           epidermidis SK135]
 gi|293367695|ref|ZP_06614347.1| DNA polymerase III, gamma/tau subunit DnaX [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|27316774|gb|AAO05949.1|AE016751_244 DNA polymerase III gamma and tau subunits [Staphylococcus
           epidermidis ATCC 12228]
 gi|57636768|gb|AAW53556.1| DNA polymerase III, gamma and tau subunits [Staphylococcus
           epidermidis RP62A]
 gi|251805208|gb|EES57865.1| DNA-directed DNA polymerase [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|281296527|gb|EFA89039.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
           epidermidis SK135]
 gi|291318265|gb|EFE58659.1| DNA polymerase III, gamma/tau subunit DnaX [Staphylococcus
           epidermidis M23864:W2(grey)]
          Length = 568

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 53/263 (20%), Positives = 95/263 (36%), Gaps = 25/263 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RP++ ++  GQ      L+  I   K         +F GP G GKT++A+V A+
Sbjct: 5   ALYRMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAY----IFSGPRGTGKTSIAKVFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +         P    A  +   +T   + DV+ ID      +  +  I +++ Y   E 
Sbjct: 61  AINCLNSDDGEPCNECA--ICKGITQGTNNDVIEIDAASNNGVDEIRNIRDKVKYAPSES 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++   +    I ATT    +   +  R         
Sbjct: 119 KYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISR-AQRFDFKA 177

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA----HA 238
              + +   ++  A    L   D A   IA  S G  R A  ++ +   F +       A
Sbjct: 178 ISSDQIIDRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIMDQAIAFGDERLTLQDA 237

Query: 239 KTITREIADAALLRLAIDKMGFD 261
             +T  + +AAL  L  D +  D
Sbjct: 238 LNVTGSVDEAALNELFNDIVKSD 260


>gi|332293510|ref|YP_004432119.1| DNA polymerase III, subunits gamma and tau [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332171596|gb|AEE20851.1| DNA polymerase III, subunits gamma and tau [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 634

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 62/288 (21%), Positives = 99/288 (34%), Gaps = 57/288 (19%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T ++  GQ    + L    E A         +LF GP G+GKT+ A+++A+++
Sbjct: 8   ARKYRPTTFKDVVGQQAITNTL----ENAIRNNHLAQALLFCGPRGVGKTSCARILAKQI 63

Query: 79  G------------VNFRSTSGPVIAKAGDLAALLT------NLEDRDVLFIDEIHRLSII 120
                         N             D+ +L+        +    V  IDE+H LS  
Sbjct: 64  NTDENTSPDEDFAFNVFELDAASNNSVDDIRSLIDQVRIPPQVGKYKVYIIDEVHMLSAA 123

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                   +E+                         I ATT    +   +  R  I    
Sbjct: 124 AFNAFLKTLEE------------------PPKHAIFILATTEKHKIIPTILSRCQIFDFK 165

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
                +  K +VQ  A   G+   +EA   IA ++ G  R A  +  RV  F+     KT
Sbjct: 166 RITVTDARKHLVQ-IAIEEGIEADEEALHIIAQKADGAMRDALSIFDRVVSFS----GKT 220

Query: 241 ITREIADAALLRLAIDKMGFDQLD-----------LRYLTMIARNFGG 277
           ++R+     L  L  D   F   D           ++Y  +++R F G
Sbjct: 221 LSRKAVTENLNVLDYDTY-FTTTDYLLTNDIPQVLVQYNDILSRGFDG 267


>gi|323344967|ref|ZP_08085191.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella oralis ATCC
           33269]
 gi|323094237|gb|EFZ36814.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella oralis ATCC
           33269]
          Length = 597

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 52/306 (16%), Positives = 114/306 (37%), Gaps = 27/306 (8%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T +   GQ    + LK  +++ K         LF GP G+GKTT A++ A+ +
Sbjct: 8   ARKYRPMTFDSVVGQSALTTTLKNAVKSGKLAHAY----LFCGPRGVGKTTCARIFAKAI 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI------IVEEILYPAMEDF 132
                + +G    +     A        ++  +D     S+      + +  + P +  +
Sbjct: 64  NCQNPTETGEACNECESCKA-FNEQRSYNIFELDAASNNSVENIKALMEQTRIPPQVGKY 122

Query: 133 QLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           ++ ++               ++++   +    I ATT    +   +  R  I        
Sbjct: 123 KVFIIDEVHMLSTSAFNAFLKTLEEPPAHVIFILATTEKHKILPTIISRCQIYDFERM-S 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE--VAHAKTIT 242
           ++ +   ++  A   G+   D+A   IA ++ G  R A  +  +   F +  + + K I 
Sbjct: 182 VQGIVDHLKMVADKEGITYEDQALSIIAEKADGGMRDALSIFDQAASFCQGNITYKKVIE 241

Query: 243 REIADAALLRLAIDKMGFD----QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
                 A     I  +       ++ +   ++I++ F GG + I  ++A +     A ++
Sbjct: 242 DLNVLDAENYFNIVDLSLQNKVAEIMVLLNSIISKGFDGGHL-INGLAAHIRNVLMAKDE 300

Query: 299 LIEPYM 304
              P +
Sbjct: 301 QTLPLL 306


>gi|149045257|gb|EDL98343.1| Werner helicase interacting protein 1, isoform CRA_a [Rattus
           norvegicus]
          Length = 334

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 17/116 (14%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLG 66
           R + +       +RP TL+++ GQ  A      L+  +E        +  ++  GPPG G
Sbjct: 214 RQMLEGKPLADKMRPDTLQDYIGQSRAVGQETLLRSLLE-----TNEIPSLILWGPPGCG 268

Query: 67  KTTLAQVVARELGVNFRST--SGPVIAKAGDLAALLTNLE-------DRDVLFIDE 113
           KTTLA ++A     +           AK  D+  ++   +        + +LFIDE
Sbjct: 269 KTTLAHIIANNSKKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDE 324


>gi|50309079|ref|XP_454545.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49643680|emb|CAG99632.1| KLLA0E13201p [Kluyveromyces lactis]
          Length = 329

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 43/251 (17%), Positives = 83/251 (33%), Gaps = 37/251 (14%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           S+    I   RP TL++  GQ    + ++ F+   +     L H+LF GPPG GKT+   
Sbjct: 5   SENLPWIEKYRPETLDDVYGQQNVVNTVRKFLHEGR-----LPHLLFYGPPGTGKTSTIV 59

Query: 73  VVAREL------------GVNFRSTSGPVIAKAGDLAALLTNLEDR-DVLFIDEIHRLSI 119
            +ARE+              +       V  +  + A+          ++ +DE   ++ 
Sbjct: 60  ALAREIYGSNYRNMVLELNASDDRGIDVVRNQIKEFASTRQIFSKGFKLIILDEADAMTN 119

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
             +  L   +E +       +                         LT  L  R     R
Sbjct: 120 AAQNALRRIIERY------TKNTRF------------CILANYAHKLTPALLSRC-TRFR 160

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
                 + ++  +        L +  +A   +   S G  R A  +L+  R   +    +
Sbjct: 161 FQPLSEQAIERRIANVLVKEHLKLDPQAHAALLRLSSGDMRRALNVLQAARATLDNPDTE 220

Query: 240 TITREIADAAL 250
            +T ++    +
Sbjct: 221 EVTEDLIYECI 231


>gi|291333464|gb|ADD93165.1| putative ATPase family associated with various cellular activities
           AAA [uncultured archaeon MedDCM-OCT-S05-C724]
          Length = 321

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 83/229 (36%), Gaps = 37/229 (16%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   I   RP  L E  GQ    + LK +++ +     ++ H+LF GP G+GKTT A  +
Sbjct: 2   EQIWIEKYRPNNLSEVVGQEAVTTRLKNYVKES-----SMPHLLFAGPAGIGKTTSALAL 56

Query: 75  ARE-----LGVNFRSTSGPVIAKAGDLAALLTNL--------EDRDVLFIDEIHRLSIIV 121
           ARE        N    +         +   +           +   ++F+DE   L+   
Sbjct: 57  AREMFGELWQHNLHELNASDERGIDVVRGKIKEFARTAPLGEKGFKIIFLDEADALTGAA 116

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           +  L   ME +                        + +      + +P+Q R  +  R  
Sbjct: 117 QAALRRTMEKYSRT------------------CRFVMSCNYSSKIIDPIQSRCAV-FRFR 157

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
             + EDL+  ++  A    + VT EA   +   ++G  R A   L+   
Sbjct: 158 PIKAEDLEKYLKFVASKENVKVTKEAFESLTYLAQGDLRRAINGLQMAA 206


>gi|312136661|ref|YP_004003998.1| replication factor c small subunit [Methanothermus fervidus DSM
           2088]
 gi|311224380|gb|ADP77236.1| replication factor C small subunit [Methanothermus fervidus DSM
           2088]
          Length = 318

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 82/225 (36%), Gaps = 36/225 (16%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
                RP+ L++   Q    S LK ++E      + L ++LF GP G+GKTT+A  +ARE
Sbjct: 5   WTEKYRPKVLDDVVNQKHVVSRLKKYVE-----KKTLPNLLFAGPAGVGKTTVALALARE 59

Query: 78  -----LGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEIL 125
                   NF   +         +   + N            ++F+DE+  ++   ++ L
Sbjct: 60  ILGEYWQQNFLELNASDARGIDTVRTEIKNFCRLRPINAPFRIVFLDEVDNMTRDAQQAL 119

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
              ME +                      T I +      +  P+Q R  +   L     
Sbjct: 120 RREMEMYAET------------------ATFILSCNYSSKIIEPVQSRCVVFRFLPLKSK 161

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
           + +K  ++   +   +   ++A   I   + G  R A  +L+   
Sbjct: 162 DIIKR-LKYICEKENVDYEEKALDAIVYFAEGDLRKAINILQAAA 205


>gi|255530648|ref|YP_003091020.1| DNA polymerase III subunits gamma and tau [Pedobacter heparinus DSM
           2366]
 gi|255343632|gb|ACU02958.1| DNA polymerase III, subunits gamma and tau [Pedobacter heparinus
           DSM 2366]
          Length = 602

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 49/245 (20%), Positives = 80/245 (32%), Gaps = 54/245 (22%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T E   GQ      LK  I+  +         LF GP G+GKTT A+++A+ +
Sbjct: 8   ARKYRPATFETVVGQQHITGTLKNAIKNNQLAQA----FLFCGPRGVGKTTCARILAKTI 63

Query: 79  GV-------------------------NFRSTSGPVIAKAGDLAALLT------NLEDRD 107
                                      NF            D+ +L+             
Sbjct: 64  NCTSLTAEQEACGTCESCVSFQTGHSFNFHELDAASNNSVDDIRSLIEQVRIPPQAGKYK 123

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           +  IDE+H LS          +E+                    S    I ATT    + 
Sbjct: 124 IYIIDEVHMLSANAFNAFLKTLEE------------------PPSYAIFILATTEKHKIL 165

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             +  R  I    N  ++ED+   + + A+   +AV  +    IA ++ G  R A  +  
Sbjct: 166 PTILSRCQI-FDFNRIQVEDISGHLNKIAQRENIAVEADGLHIIAQKADGGLRDALSMFD 224

Query: 228 RVRDF 232
           ++  +
Sbjct: 225 QIVSY 229


>gi|228474144|ref|ZP_04058881.1| DNA polymerase III subunit gamma/tau [Staphylococcus hominis SK119]
 gi|228271839|gb|EEK13176.1| DNA polymerase III subunit gamma/tau [Staphylococcus hominis SK119]
          Length = 569

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 83/234 (35%), Gaps = 21/234 (8%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RP++  +  GQ      L+  I   K         +F GP G GKT++A+V A+
Sbjct: 5   ALYRMFRPQSFSDVVGQEHVTKTLRNAISKGKQSHAY----IFSGPRGTGKTSIAKVFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +         P    A  +   +T   + DV+ ID      +  +  I +++ Y   E 
Sbjct: 61  AINCLNPHDGEPCNECA--ICKGITQGTNGDVIEIDAASNNGVDEIRNIRDKVKYAPSES 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++   +    I ATT    +   +  R         
Sbjct: 119 KYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISR-AQRFDFKA 177

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
              E +   ++  A+   L   + A   IA  S G  R A  ++ +   F +  
Sbjct: 178 ISTEQIVERLRFVAQEQSLDYEEAALEFIAKASEGGMRDALSIMDQAIAFGDEH 231


>gi|307719903|ref|YP_003875435.1| hypothetical protein STHERM_c22350 [Spirochaeta thermophila DSM
           6192]
 gi|306533628|gb|ADN03162.1| hypothetical protein STHERM_c22350 [Spirochaeta thermophila DSM
           6192]
          Length = 510

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 90/233 (38%), Gaps = 21/233 (9%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +   +  RP+T ++  GQ    S L   ++A +         LF GP G+GKT+ A+++A
Sbjct: 4   EVTANRRRPQTFKDLKGQEFVVSTLTNALKAGRVAHAY----LFSGPRGVGKTSAARILA 59

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII-----VEEILYPAME 130
           + L         P           ++     DV+ ID     S+       EE+L+   +
Sbjct: 60  KALNCE--QGVTPEPCGTCTSCKEISQGTAIDVIEIDGASNTSVNDVRVIREEVLFAPGK 117

Query: 131 DFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
                 ++ E             ++++        I ATT +  +   ++ R        
Sbjct: 118 ARYKVYIIDEVHMLSNSAFNALLKTIEEPPPYVVFIFATTELQRVPATIRSRCQ-QYHFR 176

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
               E + ++++  A    + V +EA   IA  + G+ R A  L  +V  F+E
Sbjct: 177 LISPEVIASLLREAASEMQVEVEEEALSWIAKEADGSLRDAYTLFDQVVSFSE 229


>gi|228470720|ref|ZP_04055571.1| DNA polymerase III, subunits gamma and tau [Porphyromonas uenonis
           60-3]
 gi|228307577|gb|EEK16573.1| DNA polymerase III, subunits gamma and tau [Porphyromonas uenonis
           60-3]
          Length = 429

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 50/252 (19%), Positives = 87/252 (34%), Gaps = 23/252 (9%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+T +E  GQ   C  LK  I+  K         LF GP G+GKT+ A+++AR +
Sbjct: 9   ARKYRPQTFDEMLGQEAICLTLKSAIQQGKIAHAY----LFCGPRGVGKTSAARILARTI 64

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHR-----LSIIVEEILYPAMEDFQ 133
                +  G       +  A L      ++  +D         +  + E++     +   
Sbjct: 65  NCEQLTPQGEACGVCANCQAALHQ-RAFNIYELDAASNNSVDDIRRLNEDVYIRPQQGKY 123

Query: 134 LDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
              ++ E             ++++        I ATT    +   +  R  +        
Sbjct: 124 KVYIIDEVHMLSSGAFNAFLKTLEEPPGYVVFILATTEKDKVLPTILSRCQVYDFKPI-P 182

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            E +   ++R A   GL     +   IA  + G  R A  L  R+   A+      I+ E
Sbjct: 183 PEQIAEQLRRVADAEGLQYDPRSFDTIARIADGGMRDALSLFDRLASTAQ---DGVISYE 239

Query: 245 IADAALLRLAID 256
                L  L  +
Sbjct: 240 QTLQTLNILDDE 251


>gi|315223833|ref|ZP_07865681.1| DNA polymerase III, gamma/tau subunit DnaX [Capnocytophaga ochracea
           F0287]
 gi|314946163|gb|EFS98164.1| DNA polymerase III, gamma/tau subunit DnaX [Capnocytophaga ochracea
           F0287]
          Length = 363

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 58/284 (20%), Positives = 95/284 (33%), Gaps = 43/284 (15%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP++  +  GQ    + L   IE           +LF GP G+GKTT A+++A+++
Sbjct: 8   ARKYRPQSFRDVVGQQAITNTLLNAIENNHLAQA----LLFTGPRGVGKTTCARILAKKI 63

Query: 79  G-------------VNFRSTSGPVIAKAGDLAALLT------NLEDRDVLFIDEIHRLSI 119
                          N             D+  L+        +    V  IDE+H LS 
Sbjct: 64  NEQTSGVEDENDFAFNVFELDAASNNSVDDIRKLIEQVRIPPQVGKYKVYIIDEVHMLST 123

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
                    +E+                         I ATT    +   +  R  I   
Sbjct: 124 AAFNAFLKTLEE------------------PPKHAIFILATTEKHKIIPTILSRCQIFDF 165

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
                I D++  ++  A+  G+   DEA   IA ++ G  R A  +  RV  F+     +
Sbjct: 166 KRI-TINDIREYLKYIAEQQGIEAEDEALQIIAQKADGAMRDALSIFDRVVSFSGEKITR 224

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIE 283
             T EI +  L      K+    LD +   ++         G +
Sbjct: 225 QATSEILN-VLDYEVYFKVTDLILDNKLPELLIAFNDSIAQGFD 267


>gi|149279562|ref|ZP_01885691.1| DNA polymerase III, tau and gamma subunits [Pedobacter sp. BAL39]
 gi|149229598|gb|EDM34988.1| DNA polymerase III, tau and gamma subunits [Pedobacter sp. BAL39]
          Length = 624

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 79/245 (32%), Gaps = 54/245 (22%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T E   GQ      LK  I   +         LF GP G+GKTT A+++A+ +
Sbjct: 8   ARKYRPATFETVVGQQHITGTLKNAIRNNQLAQA----FLFCGPRGVGKTTCARILAKTI 63

Query: 79  GV-------------------------NFRSTSGPVIAKAGDLAALLT------NLEDRD 107
                                      NF            D+ +L+             
Sbjct: 64  NCTNLTAEQEACGTCESCISFQTGHSFNFHELDAASNNSVDDIRSLIDQVRIPPQAGKYK 123

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           +  IDE+H LS          +E+                    S    I ATT    + 
Sbjct: 124 IYIIDEVHMLSANAFNAFLKTLEE------------------PPSYAIFILATTEKHKIL 165

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             +  R  I    N  +++D+ + + R A    ++V  +    IA ++ G  R A  +  
Sbjct: 166 PTILSRCQI-FDFNRIQVDDISSHLNRIAIRENISVEADGLHIIAQKADGGLRDALSMFD 224

Query: 228 RVRDF 232
           ++  +
Sbjct: 225 QIVSY 229


>gi|319954406|ref|YP_004165673.1| DNA polymerase iii, subunits gamma and tau [Cellulophaga algicola
           DSM 14237]
 gi|319423066|gb|ADV50175.1| DNA polymerase III, subunits gamma and tau [Cellulophaga algicola
           DSM 14237]
          Length = 617

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 52/247 (21%), Positives = 84/247 (34%), Gaps = 41/247 (16%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+T ++  GQ    + L   IE           +LF GP G+GKTT A+++A+++
Sbjct: 8   ARKYRPQTFKDVVGQQAITNTLLNAIE----NNHLAQALLFCGPRGVGKTTCARILAKKI 63

Query: 79  G------------VNFRSTSGPVIAKAGDLAALLT------NLEDRDVLFIDEIHRLSII 120
                         N             D+ +L         +    V  IDE+H LS  
Sbjct: 64  NEDGSQHSDEDYAFNIFELDAASNNSVDDIRSLTDQVRIPPQVGKYKVYIIDEVHMLSQS 123

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                   +E+                         I ATT    +   +  R  I    
Sbjct: 124 AFNAFLKTLEE------------------PPKHAIFILATTEKHKIIPTILSRCQIFDFK 165

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
               ++D  T ++  A+  G+   D+A   IA ++ G  R A  +  RV  FA     + 
Sbjct: 166 RI-TVKDAATYLKYIAENQGIEAEDDALHIIAQKADGAMRDALSIFDRVVSFAGKKLTRK 224

Query: 241 ITREIAD 247
              E  +
Sbjct: 225 AVTENLN 231


>gi|169836411|ref|ZP_02869599.1| Holliday junction DNA helicase B [candidate division TM7
          single-cell isolate TM7a]
          Length = 75

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 37/71 (52%), Gaps = 4/71 (5%)

Query: 2  MDREGLLSRNVSQEDADISL----LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
          M  E ++  +    D D       LRP+   E+ GQ     NL++ I+A K R E LDHV
Sbjct: 1  MAIERIVDTSSHVGDIDEQRIEVSLRPQNFSEYIGQDRLKKNLQLAIKATKKRNEPLDHV 60

Query: 58 LFVGPPGLGKT 68
          L  GPPGLGK 
Sbjct: 61 LLYGPPGLGKQ 71


>gi|150401734|ref|YP_001325500.1| replication factor C small subunit [Methanococcus aeolicus
           Nankai-3]
 gi|150014437|gb|ABR56888.1| Replication factor C [Methanococcus aeolicus Nankai-3]
          Length = 940

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 53/230 (23%), Positives = 85/230 (36%), Gaps = 35/230 (15%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   +   RP+TL E TG     + LK ++E      E+L H+LF GPPGLGKTT A  +
Sbjct: 2   EKPWVEKYRPKTLNEITGHDAIITRLKNYVE-----KESLPHMLFSGPPGLGKTTSALCL 56

Query: 75  AR-----ELGVNFRSTSGPVIAKAGDLAALLTNLED--------RDVLFIDEIHRLSIIV 121
           A+         NF   +         +   + N             ++F+DE   L+   
Sbjct: 57  AKDLYGDTWKDNFLELNSSDERGIDVVRTKVKNFARTKPIGDAPFKIIFLDESDALTSDA 116

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           +  L   ME +                 ++ RF L   T    + T   ++   I   L 
Sbjct: 117 QNALRRTMEKYS----------------DICRFILSCLTENAKIYTADERE-LKISDYLK 159

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            +E   +KT++ R  +   LA     +  +          +GR +    D
Sbjct: 160 LFEERKIKTVLNRNGEDLVLAGVKYNSEMVGHPVYKITLESGRTIEATED 209


>gi|282915794|ref|ZP_06323563.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus subsp.
           aureus D139]
 gi|282320332|gb|EFB50673.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus subsp.
           aureus D139]
          Length = 565

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 52/262 (19%), Positives = 92/262 (35%), Gaps = 29/262 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RP++ E+  GQ      L+  I   K         +F GP G GKT++A+V A+
Sbjct: 5   ALYRMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAY----IFSGPRGTGKTSIAKVFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +     +   P       +   +T   + DV+ ID      +  +  I +++ Y   E 
Sbjct: 61  AINCFNSTDGEPCNEC--HICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSES 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++   +    I ATT    +   +  R         
Sbjct: 119 KYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISR-AQRFDFKA 177

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
             ++ +   ++  A    +   DEA   IA  S G  R A  ++    D A      T+T
Sbjct: 178 ISLDQIVERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIM----DQAIAFGDGTLT 233

Query: 243 REIADAALLRLA-IDKMGFDQL 263
                 AL     +     D L
Sbjct: 234 L---QDALNVTGSVHDEALDHL 252


>gi|258646786|ref|ZP_05734255.1| ATP-dependent protease, Lon family [Dialister invisus DSM 15470]
 gi|260404214|gb|EEW97761.1| ATP-dependent protease, Lon family [Dialister invisus DSM 15470]
          Length = 638

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 80/326 (24%), Positives = 120/326 (36%), Gaps = 64/326 (19%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG---- 79
           P TL E  GQ +A   L     A+K  +    H++  GPPG+GKTT A++V  E      
Sbjct: 175 PGTLSEIVGQNDAVKAL-----ASKIASPYPQHLILYGPPGVGKTTAARLVLEEAKKTAW 229

Query: 80  ------------------VNFRSTSGPVIAKA---------GDLA---------ALLTNL 103
                              + R  + P+I             +LA          L+T+ 
Sbjct: 230 SAFGENAPFVECDGTTLRWDSRDITNPLIGSVHDPIYQGAQRELADDGIPEPKPGLVTDA 289

Query: 104 EDRDVLFIDEIHRLSIIVEEILYPAMEDFQL----DLMVGEGPSARSVKINLSR------ 153
               +LFIDEI  L  I+   L   +ED ++         E P   +    L R      
Sbjct: 290 HGG-ILFIDEIGELDPILLNKLLKVLEDKRVPFESAYYDEENPYVPAYIKKLFRDGAPAD 348

Query: 154 FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAAC---E 210
           F LI ATTR     NP        +       ED++TIV+  A+   +++ D  A    E
Sbjct: 349 FILIGATTREPQEINPAIRSRCAEVFFEPLRPEDVETIVKNAAEKLKVSLEDGVAEMISE 408

Query: 211 IAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA----ALLRLAIDKMGFDQLDLR 266
             M  R    +       V   A  A    I+REI       + L ++  KM  D  ++ 
Sbjct: 409 YTMEGRKAVNLLADAYSLVVYEAGGAGKNFISREIMRRTARGSRLTVSHHKMASDVPEVG 468

Query: 267 YLTMI-ARNFGGGPVGIETISAGLSE 291
           ++  +    F G  + IE  +    E
Sbjct: 469 HVFGLGVSGFSGSTIEIEAAAYPAKE 494


>gi|321312353|ref|YP_004204640.1| LonB ATP-dependent protease [Bacillus subtilis BSn5]
 gi|320018627|gb|ADV93613.1| LonB ATP-dependent protease [Bacillus subtilis BSn5]
          Length = 552

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 61/296 (20%), Positives = 107/296 (36%), Gaps = 57/296 (19%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M++   + R +S  +     +RP++ ++  GQ +    LK     A        HV+  G
Sbjct: 44  MEQLRKM-RAISLSEPLSEKVRPKSFQDIVGQEDGIKALK-----AALCGPNPQHVIVYG 97

Query: 62  PPGLGKTTLAQVV---ARELGVNFRSTSG-------------------PVIAKAGD---- 95
           PPG+GKT  A++V   A++   +                         P+I    D    
Sbjct: 98  PPGVGKTAAARLVLEEAKKHKQSPFKEQAVFVELDATTARFDERGIADPLIGSVHDPIYQ 157

Query: 96  -------------LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL----MV 138
                            +T+     VLFIDEI  L  I    +   +ED ++ L      
Sbjct: 158 GAGAMGQAGIPQPKQGAVTHAHGG-VLFIDEIGELHPIQMNKMLKVLEDRKVFLDSAYYS 216

Query: 139 GEGPSARSVKINL------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            E     +   ++      + F LI ATTR+     P      + +     E ++LKT+ 
Sbjct: 217 EENTQIPNHIHDIFQNGLPADFRLIGATTRMPNEIPPAIRSRCLEVFFRELEKDELKTVA 276

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  A      +++E    +   +R   R A  +++     A   + K IT E  + 
Sbjct: 277 KTAADKIEKNISEEGLDLLTSYTRN-GREAVNMIQIAAGMAVTENRKDITIEDIEW 331


>gi|315425403|dbj|BAJ47068.1| replication factor C small subunit [Candidatus Caldiarchaeum
           subterraneum]
 gi|315427367|dbj|BAJ48977.1| replication factor C small subunit [Candidatus Caldiarchaeum
           subterraneum]
          Length = 327

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 55/249 (22%), Positives = 92/249 (36%), Gaps = 39/249 (15%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           +S +  +    +   RPR L++   Q +    LK  +      ++ + H+LF GPPG GK
Sbjct: 1   MSASDVKNLPWVEKYRPRRLDDVVNQEQVVEALKNIV-----VSKNVPHMLFAGPPGTGK 55

Query: 68  TTLAQVVARELGVNFRSTSGPVIA-KAGDLAALLTNLED-----RDVLF---------ID 112
           T  A   A++L        G  I   A D   + T  E      R V F         +D
Sbjct: 56  TATAHAFAQDLFGPRYIEDGHFIEINASDERGIETIRERVKTYARSVPFGGIGFRLLLLD 115

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E  +L+   +      ME F                        I A      +  P+Q 
Sbjct: 116 ESDQLTDAAQHAFRRTMEQFSTT------------------CRFILAANYSNRIIEPIQS 157

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R  + +R      + ++T++++ A    + + D A   I   S G  R A  +L+     
Sbjct: 158 RCAV-LRFKPLSKDMVETMLKKIAASENIKLDDSAIDAIYEFSLGDMRKAINILQSAASI 216

Query: 233 AEVAHAKTI 241
           ++   +KTI
Sbjct: 217 SKTIDSKTI 225


>gi|303244607|ref|ZP_07330940.1| AAA ATPase central domain protein [Methanothermococcus okinawensis
           IH1]
 gi|302485033|gb|EFL47964.1| AAA ATPase central domain protein [Methanothermococcus okinawensis
           IH1]
          Length = 514

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 58/317 (18%), Positives = 114/317 (35%), Gaps = 44/317 (13%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
            +   RP+T+ E  G  +    LK +IE    + + +  VL VGPPG GKTTLA  +A +
Sbjct: 3   WVEKYRPKTMAEVVGNTKIKEELKKWIE-DYLQGKPVKPVLLVGPPGCGKTTLANALAND 61

Query: 78  LGVNFRSTSGP------VIAKAGDLAALLTNL-EDRDVLFIDEIHRLSIIVEEILYPAME 130
            G      +        VI +    A++  +L   R ++ +DE+  +S   +      + 
Sbjct: 62  YGFEIIELNASDKRNKDVIKQVVGSASVSKSLSGKRALIILDEVDGISGNSDRG---GVS 118

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           +    +   + P             ++ A          L++   I    + +    +  
Sbjct: 119 EILKIIKTAKNP------------IILTANDIYKPSLMSLRNACKIVKIGSVHTN-SIVP 165

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           +++R A   G  V D     IA  + G  R A   L  +    ++   +   +E+ D  +
Sbjct: 166 VLRRIALKEGFNVDDSVLKIIAKHAGGDVRAAINDLESLALGNDLNLEEV--KELPDRDV 223

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFI 310
            +   D +        Y   ++  +             + E    +E+ I         I
Sbjct: 224 EKNIFDAIRIIFKTTHYDIAVSSVYD------------VKEDIGTVEEWIAEN------I 265

Query: 311 QRTPRGRLLMPIAWQHL 327
            R  + +  +  A+ +L
Sbjct: 266 PREYKKKEDIVRAYDYL 282


>gi|56964400|ref|YP_176131.1| ATP-dependent Lon protease [Bacillus clausii KSM-K16]
 gi|56910643|dbj|BAD65170.1| ATP-dependent Lon protease [Bacillus clausii KSM-K16]
          Length = 555

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 60/289 (20%), Positives = 102/289 (35%), Gaps = 56/289 (19%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +     +RP+ L E  GQ +    L++ +           HV+  GPPG+GKT  A++V 
Sbjct: 57  EPLAEKVRPKHLSEVVGQEDGLKTLRMAL-----CGPNPQHVIIYGPPGVGKTAAARLVL 111

Query: 76  RELGVNFRST------------------------------SGPVIAKAGDLAA------- 98
            E      S                                 P+   AG +         
Sbjct: 112 DEAKRQADSPFRSTAAFVELDGATSRFDERGIADPLIGSVHDPIYQGAGSMGQAGIPQPK 171

Query: 99  --LLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL----MVGEGPSARSVKINL- 151
              +T      +LFIDEI  L  I +  L   +ED ++ L       E     S   ++ 
Sbjct: 172 PGAVTKAHGG-ILFIDEIGELHTIQQNKLLKVLEDRKVFLESAYYSSENEQIPSHIHDIF 230

Query: 152 -----SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDE 206
                + F L+AATTR      P      + +     + +++  I +R A   G+A+T E
Sbjct: 231 KRGLPADFRLVAATTRQPEEMPPAIRSRCLEVFFRALDPDEIVEIAKRAADKAGMALTSE 290

Query: 207 AACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255
           AA ++A  +    R    +++     A      +I +   +  L    +
Sbjct: 291 AAKKVADYATN-GRETVNVVQIAVGAARADKRTSIEKHDIEWVLHSSQM 338


>gi|325958394|ref|YP_004289860.1| Replication factor C small subunit [Methanobacterium sp. AL-21]
 gi|325329826|gb|ADZ08888.1| Replication factor C small subunit [Methanobacterium sp. AL-21]
          Length = 347

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 46/258 (17%), Positives = 94/258 (36%), Gaps = 42/258 (16%)

Query: 4   REGLLSRNVSQED------ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           R+ L++     E+        +   RP+TL+E  GQ      LK +++        + ++
Sbjct: 11  RQQLINNATQYENGDSMNAPWVEKYRPQTLDEVVGQEHTILRLKRYVKEG-----NMPNL 65

Query: 58  LFVGPPGLGKTTLAQVVARE-----LGVNFRSTSGPVIAKAGDLAALLTNL-------ED 105
           +F GP G+GKTT +  +A+E        NF   +         +   + +          
Sbjct: 66  MFTGPAGVGKTTTSIALAKEMLGEYWRQNFLELNASDARGIDTVRNDIKSFCRLKAVGSP 125

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
             ++F+DE+  ++   +  L   ME +                      + I +      
Sbjct: 126 FRIIFLDEVDNMTKDAQHALRREMEMYTKT------------------SSFILSCNYSSK 167

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           + +P+Q R  I   +     + +K  ++  A+  GL +   A   I   + G  R A  +
Sbjct: 168 IIDPIQSRCAIFRFVPVKGHQIIKR-LEYIAQAEGLKIDIAAIESIVYFAEGDMRRAVNI 226

Query: 226 LRRVRDFAEVAHAKTITR 243
           L+      E    +++  
Sbjct: 227 LQASSSAGEEVTEESVDE 244


>gi|42525061|ref|NP_970441.1| DNA polymerase III gamma and tau subunits [Bdellovibrio
           bacteriovorus HD100]
 gi|39577272|emb|CAE81095.1| DNA polymerase III gamma and tau subunits [Bdellovibrio
           bacteriovorus HD100]
          Length = 621

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 75/327 (22%), Positives = 114/327 (34%), Gaps = 78/327 (23%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH-VLFVGPPGLGKTTLAQVVARELGVN 81
           RP++  +  GQ      L   ++  +     L H +LF GP G GKT+ A+++A+ L   
Sbjct: 27  RPQSFTDVVGQNHITQTLSNALKNGR-----LPHALLFTGPRGTGKTSSARILAKALRCP 81

Query: 82  FRSTSGP------------------------------VIAKAGDLAALLTNLEDRDVLFI 111
                 P                               I +  D  A + +     +  I
Sbjct: 82  NAQNFVPCNDCYSCNEIAGGSSIDVIEIDGASNNGVDAIRELRDTVAFMPSSGKYKIYII 141

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+          P A  V         I ATT V  +   + 
Sbjct: 142 DEVHMLSTSAFNALLKTLEE----------PPAHVV--------FIMATTEVHKIPQTIL 183

Query: 172 DRFGIPIRLNFYE---IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            R               E LK I  R     G+   DEA   +A +  G+ R +  LL +
Sbjct: 184 SRCQRFDFRRISTRSITERLKLICDR----EGVTADDEALWVVARQGDGSMRDSQSLLDQ 239

Query: 229 VRDFAEVAHAKTITREI---ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETI 285
           V  FA     +    EI    D ALL   ++ +  D+     L +I           E I
Sbjct: 240 VITFANGPLTRASVVEILGLTDRALLFETLNAL-IDRNSQAVLKVI-----------EKI 287

Query: 286 SAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           +A   EP    +DL+E  MI+   + +
Sbjct: 288 AAAGFEPHLYSQDLLE--MIRNLLLIK 312


>gi|329727982|gb|EGG64429.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
           epidermidis VCU144]
          Length = 568

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 53/263 (20%), Positives = 95/263 (36%), Gaps = 25/263 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RP++ ++  GQ      L+  I   K         +F GP G GKT++A+V A+
Sbjct: 5   ALYRMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAY----IFSGPRGTGKTSIAKVFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +         P    A  +   +T   + DV+ ID      +  +  I +++ Y   E 
Sbjct: 61  AINCLNSDDGEPCNECA--ICKGITQGTNNDVIDIDAASNNGVDEIRNIRDKVKYAPSES 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++   +    I ATT    +   +  R         
Sbjct: 119 KYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISR-AQRFDFKA 177

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA----HA 238
              + +   ++  A    L   D A   IA  S G  R A  ++ +   F +       A
Sbjct: 178 ISSDQIIDRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIMDQAIAFGDERLTLQDA 237

Query: 239 KTITREIADAALLRLAIDKMGFD 261
             +T  + +AAL  L  D +  D
Sbjct: 238 LNVTGSVDEAALNELFNDIVKSD 260


>gi|168181088|ref|ZP_02615752.1| ATP-dependent protease [Clostridium botulinum NCTC 2916]
 gi|170756465|ref|YP_001783256.1| ATP-dependent protease [Clostridium botulinum B1 str. Okra]
 gi|226951073|ref|YP_002806164.1| ATP-dependent protease [Clostridium botulinum A2 str. Kyoto]
 gi|169121677|gb|ACA45513.1| ATP-dependent protease [Clostridium botulinum B1 str. Okra]
 gi|182668067|gb|EDT80046.1| ATP-dependent protease [Clostridium botulinum NCTC 2916]
 gi|226843703|gb|ACO86369.1| ATP-dependent protease [Clostridium botulinum A2 str. Kyoto]
 gi|295320953|gb|ADG01331.1| ATP-dependent protease [Clostridium botulinum F str. 230613]
          Length = 639

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 58/281 (20%), Positives = 96/281 (34%), Gaps = 57/281 (20%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG- 79
           LLRP +  E  GQ     +L      +K  +    H++  GPPG+GKT+ A++   E+  
Sbjct: 172 LLRPASFSEIIGQERPIKSL-----LSKIASPYPQHIILYGPPGVGKTSAARLALEEVKK 226

Query: 80  ---------------------VNFRSTSGPVIAKA---------GDLAA---------LL 100
                                 + R  + P++             DLA          L+
Sbjct: 227 LKYTPFYKDSKFVEVDGTTLRWDPREITNPLLGSVHDPIYQGSKRDLAETGIPEPKLGLV 286

Query: 101 TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV------GEGPSARSVKIN---- 150
           T      VLFIDEI  L  +++  L   +ED +++          E        +     
Sbjct: 287 TEAHGG-VLFIDEIGELDDMLQNKLLKVLEDKRVEFSSSYYDPDDENTPKYIKHLFENGA 345

Query: 151 LSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACE 210
            + F LI ATTR     NP        +       +D++ IV   A    + + D    +
Sbjct: 346 PADFVLIGATTREPSEINPALRSRCAEVFFEPLSSKDIEKIVINAADKLNIILED-GVAQ 404

Query: 211 IAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
              R     R A  +L  V  +A   + +       +  + 
Sbjct: 405 TISRYTIEGRKAVNILSDVYGYALYRNKEYKEGTKLNITMD 445


>gi|78044943|ref|YP_359192.1| putative ATP-dependent protease La [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77997058|gb|ABB15957.1| putative ATP-dependent protease La [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 547

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 62/275 (22%), Positives = 92/275 (33%), Gaps = 56/275 (20%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +      RP    E  GQ E    LK     A        HV+  GPPG+GKT  A++V 
Sbjct: 58  EPLAEKTRPENFSEIIGQEEGIEALK-----AALCGPNPQHVILYGPPGVGKTAAARLVL 112

Query: 76  RELGVNFRSTSG----------------------PVIAKAGD----------LAAL---- 99
           +E   +  S                         P++    D          +A +    
Sbjct: 113 KEAIKSPASPFKEGAAFVEVDATCTRFDERGIADPLLGSVHDPIYQGAGPLGIAGIPQPK 172

Query: 100 ---LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL----MVGEGPSARSV----- 147
              +T      +LFIDEI  L  +    L   +ED ++ L       E P          
Sbjct: 173 PGAVTKAHGG-ILFIDEIGELHPVQMNKLLKVLEDRKVFLESAYYFSENPEIPQHIHEIF 231

Query: 148 -KINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDE 206
            K   + F LI ATTR      P      + I       E+++ I Q  AK  G+++   
Sbjct: 232 QKGLPADFRLIGATTRKPEELPPALRSRCVEIFFKPLGDEEIREIAQNAAKKIGISLGKH 291

Query: 207 AACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           A   I   +  + R A  +++     A     K I
Sbjct: 292 ALQTIVKYAN-SGREAVNIVQLAAGLALGEGRKRI 325


>gi|321309586|ref|YP_004191915.1| DNA polymerase III subunits gamma and tau [Mycoplasma haemofelis
           str. Langford 1]
 gi|319801430|emb|CBY92076.1| DNA polymerase III subunits gamma and tau [Mycoplasma haemofelis
           str. Langford 1]
          Length = 552

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 49/277 (17%), Positives = 102/277 (36%), Gaps = 25/277 (9%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
            E    +  RPR+L +  GQ    +     I     + + L   +F G  G GKT++A++
Sbjct: 2   PELNLYNKYRPRSLSDLIGQETIKNQ----IRQIFTQNKLLQSFIFYGLHGTGKTSVARI 57

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPA 128
            ++          G V  +  +   L+      D+  ID      +  +  ++    Y A
Sbjct: 58  FSKAWNCPKFKELGDVCNEC-ESCKLIDQNRTTDIYEIDAASNSGVENIRDVIHNTQYVA 116

Query: 129 MEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +   +   ++ E             ++++        +  TT +  + + +  R      
Sbjct: 117 LNLKKKVYIIDEAHNLSNSAWNALLKTIEEPSGHVIFLFLTTNIQKIPDTIISRC-HKYN 175

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR----DFAEV 235
            N+   EDL T++ +  K     ++ +A   +A  + G+ R    LL +V     D  EV
Sbjct: 176 FNYLSKEDLITLINKVCKAEAKEISPDANERLANLAEGSARECLSLLEQVFLNSPDTIEV 235

Query: 236 AH-AKTITREIADAALLRLAIDKMGFDQLDLRYLTMI 271
           +   +  +       L   ++   G  +  L+YL  +
Sbjct: 236 SDIEQVFSLSSRKDTLHLASLIISGTLEESLKYLENL 272


>gi|332796204|ref|YP_004457704.1| DNA replication factor C, small subunit [Acidianus hospitalis W1]
 gi|332693939|gb|AEE93406.1| DNA replication factor C, small subunit [Acidianus hospitalis W1]
          Length = 326

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 49/237 (20%), Positives = 92/237 (38%), Gaps = 37/237 (15%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           + +E       RPR+L++   Q +    LK F++      + + H+LF GPPG GKTT A
Sbjct: 1   MEEEILWAEKYRPRSLDDIVNQKDIVERLKRFVK-----EKNMPHLLFAGPPGTGKTTAA 55

Query: 72  QVVAR------------ELGVNFRSTSGPVIAKAGDLAA-LLTNLEDRDVLFIDEIHRLS 118
             +              EL  +       +  K  + A  ++++     V+ +DE   ++
Sbjct: 56  LALVHDLYGDSYEQFFLELNASDERGIDVIRNKVKEFARTMVSSSVPFKVILLDEADNMT 115

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
              ++ L   ME      +  E                I A   +  + +P+Q R  +  
Sbjct: 116 ADAQQALRRTME------LYTESTRF------------ILACNYLSKIIDPIQSRTAL-F 156

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
           R    + ED+ + ++  AK   +   ++A   I   + G  R A   L+    + +V
Sbjct: 157 RFYPLKKEDVVSRLEFIAKEEKVEYDEKALETIYDVTMGDMRKAINTLQAASAYGKV 213


>gi|305667604|ref|YP_003863891.1| DNA polymerase III subunit gamma/tau [Maribacter sp. HTCC2170]
 gi|88709654|gb|EAR01887.1| DNA polymerase III subunit gamma/tau [Maribacter sp. HTCC2170]
          Length = 614

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 80/233 (34%), Gaps = 41/233 (17%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+T ++  GQ    + L   IE           +LF GP G+GKTT A+++A+++
Sbjct: 15  ARKYRPQTFKDVVGQQAITNTLLNAIE----HNHLAQALLFCGPRGVGKTTCARILAKQI 70

Query: 79  G------------VNFRSTSGPVIAKAGDLAALLT------NLEDRDVLFIDEIHRLSII 120
                         N             D+  L+        +    V  IDE+H LS  
Sbjct: 71  NQDGTEREDEDFAFNIFELDAASNNSVDDIRNLIDQVRIPPQVGKYKVYIIDEVHMLSQS 130

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                   +E+                         I ATT    +   +  R  I    
Sbjct: 131 AFNAFLKTLEE------------------PPKHAIFILATTEKHKIIPTILSRCQIFDFK 172

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
               ++D    ++  AK  G+   D+A   IA ++ G  R A  +  RV  F+
Sbjct: 173 RI-TVKDAAEYLKYIAKNQGIVADDDALHIIAQKADGAMRDALSIFDRVVSFS 224


>gi|317503214|ref|ZP_07961273.1| replication-associated recombination protein A [Prevotella
          salivae DSM 15606]
 gi|315665658|gb|EFV05266.1| replication-associated recombination protein A [Prevotella
          salivae DSM 15606]
          Length = 73

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 2/72 (2%)

Query: 16 DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
          +     +RP +L+E+ GQ        V  +   A    +   +  GPPG+GKTTLAQ++A
Sbjct: 3  EPLAERMRPHSLDEYVGQQHLVGRGAVLRQMIDA--GRISSFILWGPPGVGKTTLAQIIA 60

Query: 76 RELGVNFRSTSG 87
           +L   F + S 
Sbjct: 61 HKLETPFYTLSA 72


>gi|289192746|ref|YP_003458687.1| AAA ATPase central domain protein [Methanocaldococcus sp. FS406-22]
 gi|288939196|gb|ADC69951.1| AAA ATPase central domain protein [Methanocaldococcus sp. FS406-22]
          Length = 515

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 48/209 (22%), Positives = 88/209 (42%), Gaps = 22/209 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           + +   RP++L+E  G  +    LK +IE +  + E    +L VGPPG GKTTLA  +A 
Sbjct: 3   SWVEKYRPKSLKEVAGHDKVKEKLKTWIE-SYLKGEHPKPILLVGPPGCGKTTLAYALAN 61

Query: 77  ELGVNFRS------TSGPVIAKAGDLAALLTNL-EDRDVLFIDEIHRLSIIVE----EIL 125
           + G            S  VI K    AA  +++   + ++ +DE+  +S   +      L
Sbjct: 62  DYGFEVIELNASDKRSASVIKKVVGHAATSSSIFGKKFLIILDEVDGISGKEDAGGVSEL 121

Query: 126 YPAMEDFQLDLMVGEG-PSARSVKINLSRFTLIAA----TTRVGLLTNPLQDRFGIPIRL 180
              ++  +  +++      A +++  L    +I      T  V  +   +  + G+ +  
Sbjct: 122 IKVIKKAKNPIILTANDAYAPAIRNLLPYVEVIQLNPVHTNSVYKVLKKIAQKEGLDV-- 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAAC 209
              + + LK I Q  A     A+ D  A 
Sbjct: 180 ---DDKTLKMIAQHSAGDLRSAINDLEAL 205


>gi|282878261|ref|ZP_06287057.1| DNA polymerase III, subunit gamma and tau [Prevotella buccalis ATCC
           35310]
 gi|281299679|gb|EFA92052.1| DNA polymerase III, subunit gamma and tau [Prevotella buccalis ATCC
           35310]
          Length = 593

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 49/284 (17%), Positives = 100/284 (35%), Gaps = 34/284 (11%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T +   GQ    + LK  +++ K         LF GP G+GKTT A++ A+ +
Sbjct: 8   ARKYRPMTFDAVVGQSALITTLKNAVKSGKLAHAY----LFCGPRGVGKTTCARIFAKAI 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI------IVEEILYPAMEDF 132
                +  G    +     A        ++  +D     S+      + +  + P +  +
Sbjct: 64  NCLNPTADGEACNECESCQA-FNEQRSYNIFELDAASNNSVENIKSLMDQTRIPPQVGKY 122

Query: 133 QLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           ++ ++               ++++   +    I ATT    +   +  R  I        
Sbjct: 123 KVFIIDEVHMLSTSAFNAFLKTLEEPPAHVIFILATTEKHKILPTIISRCQIYDFERMAT 182

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            + +   ++  A+  G+   D A   IA ++ G  R A  +  +   F +      IT +
Sbjct: 183 TDII-NHLKNVAQQEGITYEDAALNIIAEKADGGMRDALSVFDQAASFCQ----GNITYD 237

Query: 245 IADAALLRLAID----------KMGFDQLDLRYLTMIARNFGGG 278
                L  L  D          +     + +   +++A+ F GG
Sbjct: 238 KVLEDLNVLDADNYFKMVDLSLENKVSDVMVLLNSILAKGFDGG 281


>gi|296331632|ref|ZP_06874101.1| LonB ATP-dependent protease [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305675409|ref|YP_003867081.1| LonB ATP-dependent protease [Bacillus subtilis subsp. spizizenii
           str. W23]
 gi|296151227|gb|EFG92107.1| LonB ATP-dependent protease [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305413653|gb|ADM38772.1| LonB ATP-dependent protease [Bacillus subtilis subsp. spizizenii
           str. W23]
          Length = 552

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 62/296 (20%), Positives = 108/296 (36%), Gaps = 57/296 (19%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M++   + R +S  +     +RP++ ++  GQ +    LK     A        HV+  G
Sbjct: 44  MEQLRKM-RAISLSEPLSEKVRPKSFQDIVGQEDGIKALK-----AALCGPNPQHVIVYG 97

Query: 62  PPGLGKTTLAQVV---ARELGVNFRSTSG-------------------PVIAKAGD---- 95
           PPG+GKT  A++V   A++   +                         P+I    D    
Sbjct: 98  PPGVGKTAAARLVLEEAKKHKQSPFKEQAVFVELDATTARFDERGIADPLIGSVHDPIYQ 157

Query: 96  -------------LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL----MV 138
                            +T+     VLFIDEI  L  I    +   +ED ++ L      
Sbjct: 158 GAGAMGQAGIPQPKQGAVTHAHGG-VLFIDEIGELHPIQMNKMLKVLEDRKVFLDSAYYS 216

Query: 139 GEGPSARSVKINL------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            E     +   ++      + F LI ATTR+     P      + +     E ++LKT+ 
Sbjct: 217 EENTQIPNHIHDIFQNGLPADFRLIGATTRMPNEIPPAIRSRCLEVFFRELEKDELKTVA 276

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  A      ++DE+   +   +R   R A  +++     A   + K IT E  + 
Sbjct: 277 KTAADKIEKNISDESLDLLTSYTRN-GREAVNMIQIAAGMAVTENRKDITIEDIEW 331


>gi|187251871|ref|YP_001876353.1| DNA polymerase III subunits gamma and tau [Elusimicrobium minutum
           Pei191]
 gi|186972031|gb|ACC99016.1| DNA polymerase III, subunits gamma and tau [Elusimicrobium minutum
           Pei191]
          Length = 627

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 56/272 (20%), Positives = 100/272 (36%), Gaps = 30/272 (11%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD   +  +   +  +  +  RP+T E+  GQ      L   I+  +         LF G
Sbjct: 1   MD---MFGQEKDRYISLSNKYRPQTFEDVVGQETISKTLTNAIKLGRVGHAY----LFYG 53

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAAL--LTNLEDRDVLFIDEIHRLSI 119
           P G GKTT A++ A+ L     + + P  +  G       + N  D DVL +D      +
Sbjct: 54  PRGCGKTTSARIFAKALNC-TGNGNKPAASPCGKCPQCIEIANGSDMDVLELDAASNTQV 112

Query: 120 ------IVEEILYPAMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVG 164
                 I++ +   A  D     ++ E             ++++   +    I ATT   
Sbjct: 113 DKIREAIIDTVALAATRDRFKIFILDEVHMLSDSSFNALLKTIEEPPAHVVFILATTEKH 172

Query: 165 LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGR 224
            +   +  R     R      ED+   +   A+   + +  +A   IA ++ G  R A  
Sbjct: 173 KVPATISSRCQ-TFRFRPITQEDISAHLTALAQKENINIEPKAVQIIASQAGGALRDALT 231

Query: 225 LLRRVRDFAEVAHAKTITREIADAALLRLAID 256
           +L R   ++      +IT E+    L  +  D
Sbjct: 232 ILDRAIAYS----DGSITEELVIDMLGLMPED 259


>gi|30913228|sp|O74111|RFC3_ARXAD RecName: Full=Replication factor C subunit 3; Short=Replication
           factor C3; AltName: Full=Activator 1 subunit 3
 gi|3367626|emb|CAA07618.1| replication factor C subunit [Blastobotrys adeninivorans]
          Length = 338

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 68/327 (20%), Positives = 120/327 (36%), Gaps = 39/327 (11%)

Query: 2   MDREGLLSRNVSQED--ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           MD+   +     QE+    +   RP TL+E  G     + +K F+E  K     L H+LF
Sbjct: 1   MDKGKKVETVEKQENSLPWVEKYRPTTLDEVAGHEGVITTIKKFVEEGK-----LPHLLF 55

Query: 60  VGPPGLGKTTLAQVVARE-LGVNFRSTSGPV-------IAKAGDLAALLTNLED-----R 106
            GPPG GKTT    VAR+  G N+R+    +       I    D      +         
Sbjct: 56  HGPPGTGKTTTIIAVARQIYGKNYRNMILELNASDERGIDVVRDQIKTFASTRQIFSSGF 115

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFT-----LIAA 159
            ++ +DE   ++   +  L   +E +       +    + +     LSR T      +  
Sbjct: 116 KLVILDEADAMTNAAQNALRRIIEKYSAHTRFCILANYTHKLNPALLSRCTRFRFSPLKE 175

Query: 160 TTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT-IVQRGAKLTG-----LAVTDEAACEIAM 213
                 L + ++          F  +  L +  ++R   +       +   ++ + E+  
Sbjct: 176 DAIKHRLAHVIEQESVDLSPEAFQSLLHLSSGDMRRALNVLQACYASVDAGEQISEELVY 235

Query: 214 RSRGTPRIAG--RLLRRVRDFAEVAHAKTITREIADAAL---LRLAIDKMGFDQLDLRYL 268
              G+PR A    +L+ V D +  +   T +       L     L    + F +LDL+  
Sbjct: 236 DCVGSPRPADIRTVLQAVLDGSWESALHTFSYIKQSKGLALADMLTAFAVEFQKLDLQNK 295

Query: 269 TMIARNFGGGPVGIETISAGLSEPRDA 295
           T IA   G   +    +S+G +E    
Sbjct: 296 TRIALLDGLSEIEW-RLSSGGNESIQT 321


>gi|283768194|ref|ZP_06341108.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus subsp.
           aureus H19]
 gi|283461139|gb|EFC08224.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus subsp.
           aureus H19]
          Length = 565

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 52/262 (19%), Positives = 92/262 (35%), Gaps = 29/262 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RP++ E+  GQ      L+  I   K         +F GP G GKT++A+V A+
Sbjct: 5   ALYRMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAY----IFSGPRGTGKTSIAKVFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +     +   P       +   +T   + DV+ ID      +  +  I +++ Y   E 
Sbjct: 61  AINCLNSTDGEPCNEC--HICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSES 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++   +    I ATT    +   +  R         
Sbjct: 119 KYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISR-AQRFDFKA 177

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
             ++ +   ++  A    +   DEA   IA  S G  R A  ++    D A      T+T
Sbjct: 178 ISLDQIVERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIM----DQAIAFGDGTLT 233

Query: 243 REIADAALLRLA-IDKMGFDQL 263
                 AL     +     D L
Sbjct: 234 L---QDALNVTGSVHDEALDHL 252


>gi|146302257|ref|YP_001196848.1| DNA polymerase III, subunits gamma and tau [Flavobacterium
           johnsoniae UW101]
 gi|146156675|gb|ABQ07529.1| DNA polymerase III, subunits gamma and tau [Flavobacterium
           johnsoniae UW101]
          Length = 361

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 51/247 (20%), Positives = 83/247 (33%), Gaps = 41/247 (16%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+T ++  GQ    + L   IE+          +LF GP G+GKTT A+++AR++
Sbjct: 8   ARKYRPQTFKDVVGQKAITNTLLNAIES----NHLASALLFTGPRGVGKTTCARILARKI 63

Query: 79  G------------VNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSII 120
                         N             D+  L+  +          V  IDE+H LS  
Sbjct: 64  NQPGYDDPTEDFAFNVFELDAASNNSVDDIRNLIDQVRIPPQTGQYKVYIIDEVHMLSSA 123

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                   +E+                         I ATT    +   +  R  I    
Sbjct: 124 AFNAFLKTLEE------------------PPKHAIFILATTEKHKILPTILSRCQIFDFK 165

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
               ++D K  +   A+  G+   D+A   IA ++ G  R A  +  RV  +      + 
Sbjct: 166 RI-TVKDAKEHLADVAESQGINFEDDALHIIAQKADGAMRDALSIFDRVVSYCGTNLTRQ 224

Query: 241 ITREIAD 247
              E  +
Sbjct: 225 AVTENLN 231


>gi|295692238|ref|YP_003600848.1| DNA polymerase iii, gamma/tau subunit [Lactobacillus crispatus ST1]
 gi|295030344|emb|CBL49823.1| DNA polymerase III, gamma/tau subunit [Lactobacillus crispatus ST1]
          Length = 601

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 59/306 (19%), Positives = 102/306 (33%), Gaps = 33/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPRT +   GQ      LK  I     R +     LF GP G GKT+ A++ A+ L    
Sbjct: 11  RPRTFDSVIGQEAITDTLKNAI----KRGKVSHAFLFAGPRGTGKTSCAKIFAKALNCTN 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P    A  +AA   ++   D++ ID      +  +  I +++ Y   E      +
Sbjct: 67  LQDGEPCNECANCIAADQGSMP--DIMEIDAASNNGVDEIREIRDKVKYAPTEGKYKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT +  +   +  R            EDL
Sbjct: 125 IDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRI-SKEDL 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +   D+A   IA  + G  R A  +L ++  +              D 
Sbjct: 184 EKRMKYILDQENIKYEDKALAVIAQVADGGMRDALSILDQLLSY-------EKESVNYDD 236

Query: 249 ALLRLAI-DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           AL      D+   +    + L  +     G  + +             I D I     + 
Sbjct: 237 ALQITGFADRENIE----KILLALLNQDAGQALQLTQDELAKGASSKNILDEIIDLTTKS 292

Query: 308 GFIQRT 313
             I +T
Sbjct: 293 LLIVKT 298


>gi|310790808|gb|EFQ26341.1| replication factor C [Glomerella graminicola M1.001]
          Length = 383

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 52/263 (19%), Positives = 88/263 (33%), Gaps = 48/263 (18%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           S    +    +   RP+TL + T Q    + L+  ++A+      L H+LF GPPG GKT
Sbjct: 26  SAQPPRAQPWVEKYRPKTLSDVTAQDHTVTVLQRTLQAS-----NLPHMLFYGPPGTGKT 80

Query: 69  TLAQVVAR-------------ELGVNFRSTSGPVIAKAGDLAAL-----LTNLEDR---- 106
           +    +A+             EL  +       V  K  D A +         + R    
Sbjct: 81  STVLALAKELYGPEMIKSRVLELNASDERGISIVREKVKDFARMQLTNPTNEYKKRYPCP 140

Query: 107 --DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164
              ++ +DE   ++   +  L   ME +                  ++RF        V 
Sbjct: 141 PFKIIILDEADSMTQDAQSALRRTMETYS----------------KITRF--CLICNYVT 182

Query: 165 LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGR 224
            + +PL  R     R    +  + K  +   A+  G+ + D A   +   S G  R A  
Sbjct: 183 RIIDPLASRCS-KFRFKSLDQGNAKKRLGDIAENEGVQLEDGAVDALIKCSEGDLRKAIT 241

Query: 225 LLRRVRDFAEVAHAKTITREIAD 247
            L+            T   +  D
Sbjct: 242 YLQSAARLVGAGDKDTSGDDAMD 264


>gi|300122604|emb|CBK23172.2| unnamed protein product [Blastocystis hominis]
          Length = 374

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 58/278 (20%), Positives = 103/278 (37%), Gaps = 44/278 (15%)

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEI 124
            +++      FRS S    A   D+  +    E+         +LF+DEIHR +   ++I
Sbjct: 1   MIISHHTRCPFRSLSCCT-AGVQDIRTVAEQAENEYRLRHLPTILFMDEIHRFNKKQQDI 59

Query: 125 LYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAA-----TTRVGLLTNPLQDRFGIP 177
             P++E  +L L+    E PS    K  +SR  +I       +  + LLT  + +   I 
Sbjct: 60  FLPSIESGKLILIGATTENPSFSLNKALISRCRVIELQPLSRSDLLHLLTRAITEDIYIQ 119

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                +  E L+ I +R             A  +A         A +    V        
Sbjct: 120 KSGAVFSSEILEIIAER------CDGDARMALNLADACASCVLHAPQKCGNVETLT---- 169

Query: 238 AKTITREIADAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDA 295
           A+ I+RE+ D+A+ +     D  G +  ++   + + ++  G  V               
Sbjct: 170 AREISREMVDSAMTQRFVRYDNRGEEHYNIA--SALQKSIRGSDVQAAIYWLA-----RM 222

Query: 296 IEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           IE   +P  I           R L+ +A + +G+  PH
Sbjct: 223 IEGGEDPLFI----------ARRLLVMASEDVGLADPH 250


>gi|145614662|ref|XP_361944.2| conserved hypothetical protein [Magnaporthe oryzae 70-15]
 gi|145021569|gb|EDK05698.1| conserved hypothetical protein [Magnaporthe oryzae 70-15]
          Length = 384

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 54/264 (20%), Positives = 93/264 (35%), Gaps = 48/264 (18%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           +   ++    +   RP+TL + T Q    + L+  ++A+      L H+LF GPPG GKT
Sbjct: 27  NPENTRTQPWVEKYRPKTLSDVTAQDHTVTVLQRTLQAS-----NLPHMLFYGPPGTGKT 81

Query: 69  TLAQVVAR-------------ELGVNFRSTSGPVIAKAGDLAAL-LTNLEDR-------- 106
           +    +A+             EL  +       V  K  D A + LTN            
Sbjct: 82  STVLALAKELFGPELMKSRVLELNASDERGISIVREKVKDFARMQLTNPPPGYKSKYPCP 141

Query: 107 --DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164
              ++ +DE   ++   +  L   ME +                  ++RF        V 
Sbjct: 142 PFKIIILDEADSMTQDAQSALRRTMETYS----------------KITRF--CLICNYVT 183

Query: 165 LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGR 224
            + +PL  R     R    + E+ ++ ++  A   G+A+ D A   +   S G  R A  
Sbjct: 184 RIIDPLASRCS-KFRFKSLDQENARSRLEDIAAKEGVALEDGAVDALIKCSEGDLRKAIT 242

Query: 225 LLRRVRDFAEVAHAKTITREIADA 248
            L+          A    +E    
Sbjct: 243 FLQSAARLVGAVGAAGAGQEDKMD 266


>gi|118443778|ref|YP_878861.1| Lon-like ATP-dependent protease [Clostridium novyi NT]
 gi|118134234|gb|ABK61278.1| Lon-like ATP-dependent protease [Clostridium novyi NT]
          Length = 548

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 61/285 (21%), Positives = 96/285 (33%), Gaps = 56/285 (19%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV---ARELG 79
           RP++ +E  GQ +    L+  I           HV+  GPPG+GKT  A++V   A+   
Sbjct: 47  RPKSFKEIIGQEKGIKALQAAI-----CGPNPQHVIIYGPPGVGKTAAARIVLEDAKSKE 101

Query: 80  VNFRSTSG---------------------------PVIAKAGDLA---------ALLTNL 103
            +  S                              P+   AG L            +T  
Sbjct: 102 FSPFSEDAKFVEIDATTVRFDDRGIADPLIGSVHDPIYQGAGALGSAGIPQPKPGAVTKA 161

Query: 104 EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL----MVGEGPSARSVKINL------SR 153
               +LFIDEI  L  +    L   MED ++ L       E P+      ++      + 
Sbjct: 162 HGG-ILFIDEIGELHPVETNKLLKVMEDRKVFLESAYYSSENPNVPMHIKDIFENGLPAD 220

Query: 154 FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAM 213
           F L+ ATTR      P      + +       E+++ I +   K  G  + D+ A E+  
Sbjct: 221 FRLVGATTRSPEEMCPAIRSRCVEVFFRALNAEEIEKIAEDAVKKIGFTIEDK-ARELVG 279

Query: 214 RSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKM 258
                 R A  L++     A     K I  E  +  +      K 
Sbjct: 280 EYSTNGRDAVSLIQLSSGIALNEGRKNIQVEDMEWIIENGQYSKR 324


>gi|323703285|ref|ZP_08114936.1| Sigma 54 interacting domain protein [Desulfotomaculum nigrificans
           DSM 574]
 gi|323531750|gb|EGB21638.1| Sigma 54 interacting domain protein [Desulfotomaculum nigrificans
           DSM 574]
          Length = 646

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 63/290 (21%), Positives = 101/290 (34%), Gaps = 59/290 (20%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           E L S++++   + + +LRP +  E  GQ  A   L      AK  +    H++  GPPG
Sbjct: 156 EKLDSKHLAA--SAMEVLRPASFAEVIGQERAVKAL-----LAKLASPFPQHIILYGPPG 208

Query: 65  LGKTTLAQV---VARELGVNFRSTSGPVIA----------------------------KA 93
           +GKTT A++   VA+ +  +  +   P +                               
Sbjct: 209 VGKTTAARLALEVAKGIKQSPFAKDAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGAR 268

Query: 94  GDLAA---------LLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL---MVGEG 141
            DLA          L+T+     VLFIDE+  L   ++  L   +ED ++          
Sbjct: 269 RDLAETGIPEPKLGLVTDAHGG-VLFIDEVGELDPALQNKLLKVLEDKRVFFDSAYYDPN 327

Query: 142 PSARSVKINL-------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
                  I         + F LI ATTR     NP        I         ++ I+++
Sbjct: 328 DGNVPQYIKKIFEEGAPADFILIGATTREPEEINPALRSRCAEIFFEPLTPAAIQNIIKQ 387

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            A    +A+ D+   EI        R A  +L      A     +    E
Sbjct: 388 AAGKLKVAMDDQ-VPEIISEYTIEGRKAINILADAYGLASYRQQQAGGDE 436


>gi|307566326|ref|ZP_07628765.1| DNA polymerase III, subunit gamma and tau [Prevotella amnii CRIS
           21A-A]
 gi|307344903|gb|EFN90301.1| DNA polymerase III, subunit gamma and tau [Prevotella amnii CRIS
           21A-A]
          Length = 590

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/269 (18%), Positives = 99/269 (36%), Gaps = 25/269 (9%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T     GQ    + LK  + + K         LF GP G+GKTT A++ A+ +
Sbjct: 8   ARKYRPATFSSVVGQSSLTTTLKNAVISGKLAHAY----LFCGPRGVGKTTTARIFAKAI 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI------IVEEILYPAMEDF 132
                 + G    +     A        ++  +D     S+      + +  + P +  +
Sbjct: 64  NCEHPVSDGEACNECESCKA-FNEGRSYNIFELDAASNNSVENIKELMEQTRIPPQIGKY 122

Query: 133 QLDLMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           ++ ++               ++++   ++   I ATT    +   +  R  I        
Sbjct: 123 KVFIIDEVHMLSSQAFNAFLKTLEEPPAQIIFILATTEKHKILPTILSRCQIYDFERM-S 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           + D+   +++ A+   +   + A   IA ++ G  R A  +  +V  F++      IT +
Sbjct: 182 VADIIKHLEKVAEKENITYEESALNVIAEKADGGMRDALSIFDQVASFSQ----GKITYQ 237

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIAR 273
                L  L ID   FD +DL     ++ 
Sbjct: 238 KVTEDLNVLDIDNY-FDIIDLSLQNKVSE 265


>gi|163788745|ref|ZP_02183190.1| DNA polymerase III subunit gamma/tau [Flavobacteriales bacterium
           ALC-1]
 gi|159875982|gb|EDP70041.1| DNA polymerase III subunit gamma/tau [Flavobacteriales bacterium
           ALC-1]
          Length = 575

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 80/233 (34%), Gaps = 41/233 (17%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+T ++  GQ    + L   + A K    A   +LF GP G+GKTT A+++A+ +
Sbjct: 8   ARKYRPQTFKDVVGQQAITNTL---LNAIKNNHLA-QALLFTGPRGVGKTTCARILAKMI 63

Query: 79  G------------VNFRSTSGPVIAKAGDLAALLT------NLEDRDVLFIDEIHRLSII 120
                         N             D+ +L         +    V  IDE+H LS  
Sbjct: 64  NSDGNTSEDEDFAFNIFELDAASNNSVDDIRSLTDQVRIPPQVGKYKVYIIDEVHMLSQA 123

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                   +E+                         I ATT    +   +  R  I    
Sbjct: 124 AFNAFLKTLEE------------------PPKHCIFILATTEKHKIIPTILSRCQIFDFK 165

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
               + D K  ++  AK   +   D+A   IA ++ G  R A  +  RV  F+
Sbjct: 166 RI-TVTDAKEYLKYIAKEQDVTAEDDALHIIAQKADGAMRDALSIFDRVVSFS 217


>gi|323703641|ref|ZP_08115284.1| Sigma 54 interacting domain protein [Desulfotomaculum nigrificans
           DSM 574]
 gi|323531413|gb|EGB21309.1| Sigma 54 interacting domain protein [Desulfotomaculum nigrificans
           DSM 574]
          Length = 571

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 62/297 (20%), Positives = 102/297 (34%), Gaps = 58/297 (19%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M   + L  R +S  +      RP+  +E  GQ E   +L+     A        HVL  
Sbjct: 48  MEKLQRL--RAISLTEPLAERTRPKNFDEIIGQEEGLRSLR-----AALCGPNPQHVLIY 100

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------------- 106
           GPPG+GKT  A++V  E   +  S      AK  +L A     ++R              
Sbjct: 101 GPPGVGKTAAARLVLEEAKKSPSSPF-KEKAKFIELDATTARFDERGIADPLIGSVHDPI 159

Query: 107 -------------------------DVLFIDEIHRLSIIVEEILYPAMEDFQLDL----M 137
                                     +LFIDEI  L  I    L   +ED ++ L     
Sbjct: 160 YQGAGPMGMAGIPQPKPGAVTKAHGGILFIDEIGELHPIQMNKLLKVLEDRKVFLESAYY 219

Query: 138 VGEGPSARSVKINL------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
             E  +  S   ++      + F L+ ATTR      P      + I       ++++ I
Sbjct: 220 SSEDTNIPSHIHDIFQNGLPADFRLVGATTRTPEEIPPAIRSRCLEIYFRSLLPDEIEKI 279

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
               ++  GL + +  A ++  R     R A  +++     A     + I  +  + 
Sbjct: 280 AANASEKIGLPL-ERGALDVIKRYATNGREAVNIIQIAGGIALTEGRQEIKVKDVEW 335


>gi|147679221|ref|YP_001213436.1| ATP-dependent protease [Pelotomaculum thermopropionicum SI]
 gi|146275318|dbj|BAF61067.1| predicted ATP-dependent protease [Pelotomaculum thermopropionicum
           SI]
          Length = 646

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 61/273 (22%), Positives = 94/273 (34%), Gaps = 57/273 (20%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           + +  LRP + +E  GQ  A   L      AK  +    H++  GPPG+GKTT A++   
Sbjct: 167 SALEFLRPASFDEIVGQERAVKAL-----LAKLASPYPQHIILYGPPGVGKTTAARLALE 221

Query: 77  ELG----------------------VNFRSTSGPVIAKA---------GDLAA------- 98
           E                         + R  + P++             DLA        
Sbjct: 222 EAKRAGGTPFSKEAAFVEVNGATLRWDPREVTNPLLGSVHDPIYQGARRDLAESGVPEPK 281

Query: 99  --LLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL----DLMVGEGPSARSVKINL- 151
             L+T      VLFIDEI  +  I++  L   +ED ++           P+       L 
Sbjct: 282 LGLVTEAHGG-VLFIDEIGEMDPILQNKLLKVLEDKRVFFESSYYDPSDPNIPQYIKKLF 340

Query: 152 -----SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDE 206
                + F LI ATTR     NP        I         ++ I+++ A    + + D+
Sbjct: 341 EEGAPADFILIGATTREPEEINPAIRSRCAEIFFEPLTPSAVQKIIRQAAAKLQVEM-DQ 399

Query: 207 AACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           A  E+        R A  +L      A     K
Sbjct: 400 AVPEVISEYTIEGRKAVNILADAYGLACYRREK 432


>gi|151944257|gb|EDN62536.1| replication factor C subunit 3 [Saccharomyces cerevisiae YJM789]
 gi|190409258|gb|EDV12523.1| replication factor C subunit 3 [Saccharomyces cerevisiae RM11-1a]
 gi|256271294|gb|EEU06366.1| Rfc3p [Saccharomyces cerevisiae JAY291]
 gi|259149079|emb|CAY82321.1| Rfc3p [Saccharomyces cerevisiae EC1118]
 gi|323331837|gb|EGA73249.1| Rfc3p [Saccharomyces cerevisiae AWRI796]
 gi|323335982|gb|EGA77259.1| Rfc3p [Saccharomyces cerevisiae Vin13]
 gi|323346957|gb|EGA81235.1| Rfc3p [Saccharomyces cerevisiae Lalvin QA23]
 gi|323352828|gb|EGA85130.1| Rfc3p [Saccharomyces cerevisiae VL3]
          Length = 340

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/247 (17%), Positives = 80/247 (32%), Gaps = 44/247 (17%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           +    +   RP TL+E  GQ E  + ++ F++  K     L H+LF GPPG GKT+    
Sbjct: 11  ENLPWVEKYRPETLDEVYGQNEVITTVRKFVDEGK-----LPHLLFYGPPGTGKTSTIVA 65

Query: 74  VAREL------------GVNFRSTSGPVIAKAGDLAALLTNLEDR-DVLFIDEIHRLSII 120
           +ARE+              +       V  +  D A+          ++ +DE   ++  
Sbjct: 66  LAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNA 125

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            +  L   +E +       +                         LT  L  R       
Sbjct: 126 AQNALRRVIERY------TKNTRF------------CVLANYAHKLTPALLSRC----TR 163

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
             ++    + I +R A +       E         +    ++   +RRV +  +   A  
Sbjct: 164 FRFQPLPQEAIERRIANVL----VHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATL 219

Query: 241 ITREIAD 247
              +  +
Sbjct: 220 DNPDEDE 226


>gi|170069058|ref|XP_001869094.1| ATPase WRNIP1 [Culex quinquefasciatus]
 gi|167865018|gb|EDS28401.1| ATPase WRNIP1 [Culex quinquefasciatus]
          Length = 359

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 47/248 (18%), Positives = 92/248 (37%), Gaps = 19/248 (7%)

Query: 90  IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSV 147
           + +A  +A      + + +LF+DEIHR + + ++I  P +E   + L+    E PS    
Sbjct: 16  VKEAVKVAKNELKFKRKTILFMDEIHRFNKLQQDIFLPHVESGTVTLLGATTENPSFSLN 75

Query: 148 KINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEA 207
              LSR  +I            + +R         +E  +    + +   +  + ++ E 
Sbjct: 76  SALLSRCRVIVLEKLAVEPMVKILERALPQYETVMFENNNQTPDIGKLPFIPRMMISSET 135

Query: 208 ACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK--MGFDQLDL 265
              +A    G  RI    L+   +           +E   +AL  +++D+   G  +  L
Sbjct: 136 IRWLAEVCDGDARIGLNSLQLALNTVAA------RQEQEGSALKLISLDEIQEGIKKSHL 189

Query: 266 RYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIA 323
            Y          G    E ISA     R + ++    +  +       PR   R ++ +A
Sbjct: 190 LY-------DRKGDQHYELISALHKSVRASDDNAALYWCTRMLESGEDPRYLVRRMIRMA 242

Query: 324 WQHLGIDI 331
            + +GI  
Sbjct: 243 SEDIGIAD 250


>gi|148381558|ref|YP_001256099.1| ATP-dependent protease La [Clostridium botulinum A str. ATCC 3502]
 gi|153932167|ref|YP_001385935.1| ATP-dependent protease [Clostridium botulinum A str. ATCC 19397]
 gi|153936586|ref|YP_001389342.1| ATP-dependent protease [Clostridium botulinum A str. Hall]
 gi|148291042|emb|CAL85179.1| ATP-dependent protease La [Clostridium botulinum A str. ATCC 3502]
 gi|152928211|gb|ABS33711.1| ATP-dependent protease [Clostridium botulinum A str. ATCC 19397]
 gi|152932500|gb|ABS37999.1| ATP-dependent protease [Clostridium botulinum A str. Hall]
          Length = 639

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 58/281 (20%), Positives = 95/281 (33%), Gaps = 57/281 (20%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG- 79
           LLRP +  E  GQ     +L      +K  +    H++  GPPG+GKT+ A++   E+  
Sbjct: 172 LLRPASFSEIIGQERPIKSL-----LSKIASPYPQHIILYGPPGVGKTSAARLALEEVKK 226

Query: 80  ---------------------VNFRSTSGPVIAKA---------GDLAA---------LL 100
                                 + R  + P++             DLA          L+
Sbjct: 227 LKYTPFYQESKFVEVDGTTLRWDPREITNPLLGSVHDPIYQGSKRDLAETGIPEPKLGLV 286

Query: 101 TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV------GEGPSARSVKIN---- 150
           T      VLFIDEI  L  +++  L   +ED +++          E        +     
Sbjct: 287 TEAHGG-VLFIDEIGELDDMLQNKLLKVLEDKRVEFSSSYYDPDDENTPKYIKHLFENGA 345

Query: 151 LSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACE 210
            + F LI ATTR     NP        +       +D++ IV   A    + + D    +
Sbjct: 346 PADFVLIGATTREPSEINPALRSRCAEVFFEPLSSKDIEKIVINAADKLNIILED-GVAQ 404

Query: 211 IAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
              R     R A  +L  V  +A     +       +  + 
Sbjct: 405 TISRYTIEGRKAVNILSDVYGYALYKDKEYKEGTKLNITMD 445


>gi|124010461|ref|ZP_01695100.1| DNA polymerase III subunit gamma/tau [Microscilla marina ATCC
           23134]
 gi|123983439|gb|EAY23927.1| DNA polymerase III subunit gamma/tau [Microscilla marina ATCC
           23134]
          Length = 575

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 51/270 (18%), Positives = 82/270 (30%), Gaps = 54/270 (20%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T +   GQ    + LK  I++ +         LF GP G+GKTT A+++A+ +
Sbjct: 8   ARKYRPATFDTVVGQSHITTTLKNAIKSNQLAQA----FLFCGPRGVGKTTCARILAKTI 63

Query: 79  GV-------------------------NFRSTSGPVIAKAGDLAALLTNL------EDRD 107
                                      N             D+  L+  +        R 
Sbjct: 64  NCLTPTEDFEACGTCESCVSFQNQGSMNVYELDAASSNSVDDIRNLVDQVRYPPQSGKRK 123

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           V  IDE+H LS          +E+                         I ATT    + 
Sbjct: 124 VYIIDEVHMLSNSAFNAFLKTLEE------------------PPEYVIFILATTEKHKII 165

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             +  R  I       E++D+   +   A+   +    +A   IA ++ G  R A  L  
Sbjct: 166 PTILSRCQIFDFKRI-EVKDMSGHLANIAQKEEIEAEQDALDLIAQKADGGLRDALSLFD 224

Query: 228 RVRDFAEVAHAKTITREIADAALLRLAIDK 257
            +  F+   H    +       L      K
Sbjct: 225 LITTFSADRHITYQSVVKNLHILDHDYYFK 254


>gi|220933163|ref|YP_002510071.1| Sporulation protease LonC [Halothermothrix orenii H 168]
 gi|219994473|gb|ACL71076.1| Sporulation protease LonC [Halothermothrix orenii H 168]
          Length = 639

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 63/275 (22%), Positives = 97/275 (35%), Gaps = 55/275 (20%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           I L+RP++L+E  GQ  A   L      +K  +    HV+  GPPG+GKTT A++   E 
Sbjct: 161 IDLVRPKSLDEIVGQQRALKAL-----VSKIASPYPQHVILYGPPGVGKTTAARLALEEA 215

Query: 79  G----------------------VNFRSTSGPVIAKAGD-----LAALLTN---LEDRD- 107
                                   + R  + P++    D        +L      E +  
Sbjct: 216 KKRQNTPFYGDSKFVEVDGATLRWDPREVTNPLLGSVHDPIYQGAKKVLAEGGVPEPKTG 275

Query: 108 --------VLFIDEIHRLSIIVEEILYPAMEDFQLDL---MVGEGPSARSVKINL----- 151
                   +LFIDEI  L  +++  L   MED ++        +      + I       
Sbjct: 276 LVTEAHAGILFIDEIGELDPMLQNKLLKVMEDKRVKFESSYYDKNDENIPLYIKKLFEEG 335

Query: 152 --SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAAC 209
             + F LI ATTR     NP        +  N    ED++ IV    K   + + DE   
Sbjct: 336 APADFILIGATTRSPSKINPAFRSRCAEVFFNPLSREDIQQIVINAVKKLTVKIEDEIPE 395

Query: 210 EIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            I+  +    R A  LL          +     +E
Sbjct: 396 IISEYTTE-GRTAINLLIDAYSLVLYENEGADEQE 429


>gi|260912516|ref|ZP_05919050.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella sp. oral
           taxon 472 str. F0295]
 gi|260633365|gb|EEX51521.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella sp. oral
           taxon 472 str. F0295]
          Length = 608

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 47/254 (18%), Positives = 95/254 (37%), Gaps = 24/254 (9%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP + +   GQ    + LK  +++ K         LF GP G+GKTT A++ A+ +
Sbjct: 8   ARKYRPVSFDSVVGQSALTTTLKNAVKSGKLAHAY----LFCGPRGVGKTTCARIFAKAI 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI------IVEEILYPAMEDF 132
                + +G          A   +    ++  +D     S+      + +  + P +  +
Sbjct: 64  NCLTPTETGEACNHCESCQA-FNDQRSYNIFELDAASNNSVENIKTLMDQTRIPPQVGKY 122

Query: 133 QLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           ++ ++               ++++   +    I ATT    +   +  R  I        
Sbjct: 123 KVFIIDEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQIYDFERM-T 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +  +   ++R A+  G+A  +EA   IA ++ G  R A  +  +   FA+      +T +
Sbjct: 182 VPGIIDHLKRVAENEGVAYEEEALAVIAEKADGGMRDALSIFDQAASFAQ----GNLTYD 237

Query: 245 IADAALLRLAIDKM 258
              A L  L  D  
Sbjct: 238 SVIADLNVLDSDNY 251


>gi|258448175|ref|ZP_05696304.1| DNA polymerase III gamma and tau [Staphylococcus aureus A6224]
 gi|257858690|gb|EEV81564.1| DNA polymerase III gamma and tau [Staphylococcus aureus A6224]
          Length = 565

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 52/262 (19%), Positives = 93/262 (35%), Gaps = 29/262 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RP++ E+  GQ      L+  I   K         +F GP G GKT++A+V A+
Sbjct: 5   ALYRMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAY----IFSGPRGTGKTSIAKVFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +     +   P       +   +T   + DV+ ID      +  +  I +++ Y + E 
Sbjct: 61  AINCLNSTDGEPCNEC--HICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYASSES 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++   +    I ATT    +   +  R         
Sbjct: 119 KYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISR-AQRFDFKA 177

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
             ++ +   ++  A    +   DEA   IA  S G  R A  ++    D A      T+T
Sbjct: 178 ISLDQIVERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIM----DQAIAFGDGTLT 233

Query: 243 REIADAALLRLA-IDKMGFDQL 263
                 AL     +     D L
Sbjct: 234 L---QDALNVTGSVHDEALDHL 252


>gi|323303302|gb|EGA57098.1| Rfc3p [Saccharomyces cerevisiae FostersB]
          Length = 340

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/247 (17%), Positives = 80/247 (32%), Gaps = 44/247 (17%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           +    +   RP TL+E  GQ E  + ++ F++  K     L H+LF GPPG GKT+    
Sbjct: 11  ENLPWVEKYRPETLDEVYGQNEVITTVRKFVDEGK-----LPHLLFYGPPGTGKTSTIVA 65

Query: 74  VAREL------------GVNFRSTSGPVIAKAGDLAALLTNLEDR-DVLFIDEIHRLSII 120
           +ARE+              +       V  +  D A+          ++ +DE   ++  
Sbjct: 66  LAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNA 125

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            +  L   +E +       +                         LT  L  R       
Sbjct: 126 AQNALRRVIERY------TKNTRF------------CVLANYAHKLTPALLSRC----TR 163

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
             ++    + I +R A +       E         +    ++   +RRV +  +   A  
Sbjct: 164 FRFQPLPQEAIERRIANVL----VHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATL 219

Query: 241 ITREIAD 247
              +  +
Sbjct: 220 DNPDEDE 226


>gi|307128581|ref|YP_003880611.1| DNA polymerase III subunit gamma [Candidatus Sulcia muelleri CARI]
 gi|306483043|gb|ADM89913.1| DNA polymerase III subunit gamma [Candidatus Sulcia muelleri CARI]
          Length = 347

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 76/226 (33%), Gaps = 39/226 (17%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG---- 79
           P   ++  GQ      LK  IE            LF GP G+GKTT A+++AR++     
Sbjct: 12  PIDFDDVIGQKHITKTLKKAIEKKMLSQ----SFLFCGPRGVGKTTCAKILARKVNKFSY 67

Query: 80  ------VNFRSTSGPVIAKAGDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYP 127
                  N             D+  ++  L  R       V  IDE+H LS         
Sbjct: 68  EEKNSMFNIIELDAASNNSVDDIRNIINQLNFRPQYGKYKVYIIDEVHMLSNSAFNAFLK 127

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
            +E                     S    I ATT    + + +  R  +        + D
Sbjct: 128 ILE------------------YPPSHVIFILATTEKNKILSTIISRCQVYDFKRI-SVND 168

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
           +K  +    K   +   ++A   I+  S G+ R A  L  R+  ++
Sbjct: 169 IKNYLINICKKEYIKYEEDALLLISDISDGSLRDALSLFDRLILYS 214


>gi|323307584|gb|EGA60853.1| Rfc3p [Saccharomyces cerevisiae FostersO]
          Length = 201

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 62/159 (38%), Gaps = 20/159 (12%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           +    +   RP TL+E  GQ E  + ++ F++  K     L H+LF GPPG GKT+    
Sbjct: 11  ENLPWVEKYRPETLDEVYGQNEVITTVRKFVDEGK-----LPHLLFYGPPGTGKTSTIVA 65

Query: 74  VAREL------------GVNFRSTSGPVIAKAGDLAALLTNLEDR-DVLFIDEIHRLSII 120
           +ARE+              +       V  +  D A+          ++ +DE   ++  
Sbjct: 66  LAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNA 125

Query: 121 VEEILYPAMEDFQLD--LMVGEGPSARSVKINLSRFTLI 157
            +  L   +E +  +    V    + +     LSR T  
Sbjct: 126 AQNALRRVIERYTKNTRFCVLANYAHKLTPALLSRCTRF 164


>gi|6324039|ref|NP_014109.1| Rfc3p [Saccharomyces cerevisiae S288c]
 gi|585844|sp|P38629|RFC3_YEAST RecName: Full=Replication factor C subunit 3; Short=Replication
           factor C3; AltName: Full=Activator 1 40 kDa subunit
 gi|439118|gb|AAA34969.1| replication factor C [Saccharomyces cerevisiae]
 gi|841466|gb|AAC49062.1| Rfc3p [Saccharomyces cerevisiae]
 gi|1050872|gb|AAC49110.1| replication factor C, 40 kDa subunit [Saccharomyces cerevisiae]
 gi|1302375|emb|CAA96207.1| RFC3 [Saccharomyces cerevisiae]
 gi|285814375|tpg|DAA10269.1| TPA: Rfc3p [Saccharomyces cerevisiae S288c]
          Length = 340

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/247 (17%), Positives = 80/247 (32%), Gaps = 44/247 (17%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           +    +   RP TL+E  GQ E  + ++ F++  K     L H+LF GPPG GKT+    
Sbjct: 11  ENLPWVEKYRPETLDEVYGQNEVITTVRKFVDEGK-----LPHLLFYGPPGTGKTSTIVA 65

Query: 74  VAREL------------GVNFRSTSGPVIAKAGDLAALLTNLEDR-DVLFIDEIHRLSII 120
           +ARE+              +       V  +  D A+          ++ +DE   ++  
Sbjct: 66  LAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNA 125

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            +  L   +E +       +                         LT  L  R       
Sbjct: 126 AQNALRRVIERY------TKNTRF------------CVLANYAHKLTPALLSRC----TR 163

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
             ++    + I +R A +       E         +    ++   +RRV +  +   A  
Sbjct: 164 FRFQPLPQEAIERRIANVL----VHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATL 219

Query: 241 ITREIAD 247
              +  +
Sbjct: 220 DNPDEDE 226


>gi|304380492|ref|ZP_07363170.1| DNA polymerase III, gamma/tau subunit DnaX [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|304341010|gb|EFM06932.1| DNA polymerase III, gamma/tau subunit DnaX [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
          Length = 555

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 52/262 (19%), Positives = 92/262 (35%), Gaps = 29/262 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RP++ E+  GQ      L+  I   K         +F GP G GKT++A+V A+
Sbjct: 5   ALYRMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAY----IFSGPRGTGKTSIAKVFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +     +   P       +   +T   + DV+ ID      +  +  I +++ Y   E 
Sbjct: 61  AINCLNSTDGEPCNEC--HICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSES 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++   +    I ATT    +   +  R         
Sbjct: 119 KYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISR-AQRFDFKA 177

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
             ++ +   ++  A    +   DEA   IA  S G  R A  ++    D A      T+T
Sbjct: 178 ISLDQIVERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIM----DQAIAFGDGTLT 233

Query: 243 REIADAALLRLA-IDKMGFDQL 263
                 AL     +     D L
Sbjct: 234 L---QDALNVTGSVHDEALDHL 252


>gi|18312778|ref|NP_559445.1| replication factor C small subunit [Pyrobaculum aerophilum str.
           IM2]
 gi|42559510|sp|Q8ZWS2|RFCS2_PYRAE RecName: Full=Replication factor C small subunit 2; Short=RFC small
           subunit 2; AltName: Full=Clamp loader small subunit 2
 gi|18160261|gb|AAL63627.1| replication factor C small subunit [Pyrobaculum aerophilum str.
           IM2]
          Length = 319

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 57/252 (22%), Positives = 97/252 (38%), Gaps = 42/252 (16%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
            E       RPR+ +E     E  + L+ F++A       + H+LF GPPG GKTT+A V
Sbjct: 2   SELFWFEKYRPRSFDEVVDLEEVKARLRQFVKAG-----NMPHLLFYGPPGTGKTTMALV 56

Query: 74  VARE-----LGVNFRSTSGPVIAKAGDLAALLTNLED--------RDVLFIDEIHRLSII 120
           +ARE        N    +         +   +               ++ +DE   ++  
Sbjct: 57  LARELYGEYWRENTLELNASDERGINVIRERVKEFARTAPVGKAPFKLVILDEADNMTSD 116

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            ++ L   ME                +    +RF L+A    V  +  P+Q R  + IR 
Sbjct: 117 AQQALRRIME----------------IYAQNTRFILLA--NYVSGIIEPIQSR-TVMIRF 157

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           +    E +   ++  A+  G+ V+D+A   I   ++G  R A   L+          +K 
Sbjct: 158 SPLPKEAVFARLRYIAENEGVKVSDDALEAIYEFTQGDMRRAINALQIAATV-----SKA 212

Query: 241 ITREIADAALLR 252
           +T E+   AL  
Sbjct: 213 VTEEVVAKALGM 224


>gi|219852692|ref|YP_002467124.1| replication factor C small subunit [Methanosphaerula palustris
           E1-9c]
 gi|219546951|gb|ACL17401.1| Replication factor C [Methanosphaerula palustris E1-9c]
          Length = 326

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 81/230 (35%), Gaps = 37/230 (16%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           +       I   RP  L +  GQ E    L  +++       +L H+LF G  G+GKTT 
Sbjct: 2   DADDHTIWIERYRPTRLADIVGQDEITERLISYVK-----GRSLPHLLFTGSAGIGKTTA 56

Query: 71  AQVVARE-----LGVNFRSTSGPVIAKAGDLAALLTNL--------EDRDVLFIDEIHRL 117
           A  +ARE       +NFR  +         +   +            +  +LF+DE   L
Sbjct: 57  AVALAREFFGEAWHINFREMNASDERGIDVVRNQIKQFARTSPLEGAEFKILFLDEADAL 116

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           +   +  L   ME +                        I +      + +P+Q R  I 
Sbjct: 117 TTDAQAALRRTMETYSRG------------------CRFILSCNYSSKIIDPIQSRCAI- 157

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
            R      E +   + + A   G+ VT +A   I   ++G  R A   L+
Sbjct: 158 YRFRPLTPEAISEEIGKIAGKEGITVTPDAIEAIVYIAQGDMRKAINALQ 207


>gi|217077772|ref|YP_002335490.1| DNA polymerase III, gamma and tau subunit [Thermosipho africanus
           TCF52B]
 gi|217037627|gb|ACJ76149.1| DNA polymerase III, gamma and tau subunit [Thermosipho africanus
           TCF52B]
          Length = 480

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 55/227 (24%), Positives = 91/227 (40%), Gaps = 21/227 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP+   E  GQ    +   +F+ + K   E     +F GP G GKTT+A+++A+
Sbjct: 3   ALYRKYRPKLFSEVVGQNHVKT---LFLNSLKN-GEISHAYIFAGPRGTGKTTVARILAK 58

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            L    +  +G       +    + N    DVL ID      I  +  I E + Y A + 
Sbjct: 59  SLNCENK--NGVEPCNKCNTCQSIDNGSFMDVLEIDAASNRGIDEIRKIRETVGYHAAQG 116

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++   S    I ATT    +   +  R  +    N 
Sbjct: 117 NYKVYIIDEVHMLTKEAFNALLKTLEEPPSNVVFILATTNPEKIPQTIISRCQVIDFKNL 176

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
             IED+   ++   K   + ++ EA  EIA R+ G  R A  +L +V
Sbjct: 177 -TIEDIIKRLEFVCKKENINISQEALNEIAKRANGGMRDALTILEQV 222


>gi|320581211|gb|EFW95432.1| DNA replication factor C [Pichia angusta DL-1]
          Length = 325

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 81/226 (35%), Gaps = 32/226 (14%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           S     +   RP  L++  GQ +    ++ F     A+   + H+LF GPPG GKT+   
Sbjct: 3   SDNLPWVEKYRPAKLDDVYGQKDVVQTVRKF-----AKEGRIPHLLFYGPPGTGKTSTII 57

Query: 73  VVARE-LGVNFRST----SGPVIAKAGDLAALLTNL--------EDRDVLFIDEIHRLSI 119
            +ARE  G N+R+     +         +   + N             ++ +DE   +S 
Sbjct: 58  ALARELYGKNYRNMVLELNASDDRGIDVVRDQIKNFASTRQIFNSGFKLIILDEADAMSN 117

Query: 120 IVEEILYPAMEDFQLD--LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             +  L   +E +  +    +    S +     LSR T    +       + LQDR    
Sbjct: 118 AAQNALRRVIEKYTKNTRFCILANYSHKLNPALLSRCTRFRFSPLAD---SALQDRVDYV 174

Query: 178 IRLNFYEI---------EDLKTIVQRGAKLTGLAVTDEAACEIAMR 214
           I+    +I         E  +  ++R   +     T   + E   +
Sbjct: 175 IKAEGLKIASDARQSLLELSEGDMRRALNVLQACATAVESGEEITQ 220


>gi|332796205|ref|YP_004457705.1| AAA ATPase central domain-containing protein [Acidianus hospitalis
           W1]
 gi|332693940|gb|AEE93407.1| AAA ATPase central domain protein [Acidianus hospitalis W1]
          Length = 450

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 79/223 (35%), Gaps = 24/223 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             I   RP++L +   Q +    LK +IE+  +       +L  GPPG GKTTLAQ +A 
Sbjct: 4   PWIIKYRPKSLNDVENQDDVKQELKRWIESWLSGKPENKALLLYGPPGTGKTTLAQALAH 63

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLE--------DRDVLFIDEIHRLSIIVEEILYPA 128
           + G+     +         +  +                ++F+DE+  ++   +    PA
Sbjct: 64  DYGLELLEMNASDSRNLEAIKNIAQRAAVSGSLFGTKGKLIFLDEVDGINARQDMGAIPA 123

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + +                 +  +R+ ++ A       +          + +       L
Sbjct: 124 IAE----------------LVQKTRYPVLLAANDPWDPSLRELRNLAKLVEVKKLGKYAL 167

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
           + I+ +      L   D+A  EI   S G  R A  LL    +
Sbjct: 168 RKILGKICTSEKLQCDDDALDEIIEISDGDARYAINLLEATAE 210


>gi|300811148|ref|ZP_07091660.1| DNA polymerase III, subunit gamma and tau [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
 gi|300497852|gb|EFK32862.1| DNA polymerase III, subunit gamma and tau [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
          Length = 607

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 60/326 (18%), Positives = 105/326 (32%), Gaps = 31/326 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPRT ++  GQ      LK     +  R +     LF GP G GKT+ A++ A+ L    
Sbjct: 11  RPRTFDDVVGQEAITDTLK----NSLIRGKVSHAFLFAGPRGTGKTSCAKIFAKALNCLN 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP-----AMEDFQLDLM 137
                P    +  LAA    +   D++ +D     S+     L         E      +
Sbjct: 67  LQEGEPCNECSNCLAADQGAMP--DIIEMDAASNNSVDEIRDLLDKVHYAPTEGKYKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++   +    I ATT +  +   +  R        F   E +
Sbjct: 125 IDEVHMLSISAFNALLKTLEEPPASVVFILATTELQKVPATIISRTQRYNFKRF-SNEAM 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              ++      G+   D+A   IA  + G  R A  +L ++  F         +    + 
Sbjct: 184 VQRMEYILGQEGVEYEDKALKVIAQVADGGMRDALSILDQLLSF-------EKSSVRYED 236

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL           +   + L  +        + +   +         I + I    IQ  
Sbjct: 237 ALEVTGF---AAQEQVEKLLLALLNGDSQTALDLAKSAIQDGASAQNILNEIISLTIQAM 293

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIPHR 334
              +T +G  L     Q +    P R
Sbjct: 294 LFTKTGQGEFLTDDFAQEIAQQSPDR 319


>gi|207341952|gb|EDZ69867.1| YNL290Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 181

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 62/159 (38%), Gaps = 20/159 (12%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           +    +   RP TL+E  GQ E  + ++ F++  K     L H+LF GPPG GKT+    
Sbjct: 11  ENLPWVEKYRPETLDEVYGQNEVITTVRKFVDEGK-----LPHLLFYGPPGTGKTSTIVA 65

Query: 74  VAREL------------GVNFRSTSGPVIAKAGDLAALLTNLEDR-DVLFIDEIHRLSII 120
           +ARE+              +       V  +  D A+          ++ +DE   ++  
Sbjct: 66  LAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNA 125

Query: 121 VEEILYPAMEDFQLD--LMVGEGPSARSVKINLSRFTLI 157
            +  L   +E +  +    V    + +     LSR T  
Sbjct: 126 AQNALRRVIERYTKNTRFCVLANYAHKLTPALLSRCTRF 164


>gi|298693807|gb|ADI97029.1| DNA polymerase III, gamma and tau subunits [Staphylococcus aureus
           subsp. aureus ED133]
          Length = 565

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 52/262 (19%), Positives = 92/262 (35%), Gaps = 29/262 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RP++ E+  GQ      L+  I   K         +F GP G GKT++A+V A+
Sbjct: 5   ALYRMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAY----IFSGPRGTGKTSIAKVFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +     +   P       +   +T   + DV+ ID      +  +  I +++ Y   E 
Sbjct: 61  AINCLNSTDGEPCNEC--HICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSES 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++   +    I ATT    +   +  R         
Sbjct: 119 KYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISR-AQRFDFKA 177

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
             ++ +   ++  A    +   DEA   IA  S G  R A  ++    D A      T+T
Sbjct: 178 ISLDQIVERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIM----DQAIAFGDGTLT 233

Query: 243 REIADAALLRLA-IDKMGFDQL 263
                 AL     +     D L
Sbjct: 234 L---QDALNVTGSVHDEALDHL 252


>gi|257783925|ref|YP_003179142.1| DNA polymerase III, subunits gamma and tau [Atopobium parvulum DSM
           20469]
 gi|257472432|gb|ACV50551.1| DNA polymerase III, subunits gamma and tau [Atopobium parvulum DSM
           20469]
          Length = 755

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 56/281 (19%), Positives = 102/281 (36%), Gaps = 26/281 (9%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVV 74
           ++  +  RP+T E+  GQ      LK  +       + L H  LF GP G GKTT+A+++
Sbjct: 2   ESLYTKYRPQTFEQVVGQKHVVGTLKRAV-----LEQKLSHAYLFCGPRGTGKTTMARLL 56

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL--SIIVEEIL-----YP 127
           A+ +  +      P      +   L+   +  DV  ID         + EEI+      P
Sbjct: 57  AKAILCHEAPGHLP--DGTCEDCQLIAAGQHPDVFEIDAASNTGVDNVREEIISRASYAP 114

Query: 128 AMEDFQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
                ++ ++               ++++   S  T I  TT    +   +  R      
Sbjct: 115 VCGKGKVYIIDEVHMLTSAAFNALLKTLEEPPSHVTFIMCTTDPQKILATILSRVQ-RFD 173

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF-AEVAHA 238
                 +++   +    K  G    D A   I   +RG  R A   L ++  +   V   
Sbjct: 174 FRSIAADEMAEHLISVCKNEGFTYEDAAIDLIVRYARGGMRDALSSLEQLSVYGGGVISE 233

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYL-TMIARNFGGG 278
           +T+   +  ++   +    +   Q D+  L T +   F GG
Sbjct: 234 QTVRDVLGQSSGSLINSAALALAQRDISSLFTTVNTLFEGG 274


>gi|82750185|ref|YP_415926.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus
           RF122]
 gi|82655716|emb|CAI80115.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus
           RF122]
          Length = 565

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 51/262 (19%), Positives = 91/262 (34%), Gaps = 29/262 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RP++ E+  GQ      L+  I   K         +F GP G GKT++A+V A+
Sbjct: 5   ALYRMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAY----IFSGPRGTGKTSIAKVFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +     +   P       +   +T   + DV+ ID      +  +  I +++ Y   E 
Sbjct: 61  AINCLNSADGEPCNEC--HICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSES 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++   +    I ATT    +   +  R         
Sbjct: 119 KYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISR-AQRFDFKA 177

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
             ++ +   ++  A    +   D A   IA  S G  R A  ++    D A      T+T
Sbjct: 178 ISLDQIVERLKFVADAQQIECEDAALAFIAKASEGGMRDALSIM----DQAIAFGDGTLT 233

Query: 243 REIADAALLRLA-IDKMGFDQL 263
                 AL     +     D L
Sbjct: 234 L---QDALNVTGSVHDEALDHL 252


>gi|258444431|ref|ZP_05692765.1| DNA polymerase III gamma and tau [Staphylococcus aureus A8115]
 gi|282893617|ref|ZP_06301850.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus A8117]
 gi|257850690|gb|EEV74638.1| DNA polymerase III gamma and tau [Staphylococcus aureus A8115]
 gi|282764303|gb|EFC04430.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus A8117]
          Length = 565

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 52/262 (19%), Positives = 92/262 (35%), Gaps = 29/262 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RP++ E+  GQ      L+  I   K         +F GP G GKT++A+V A+
Sbjct: 5   ALYRMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAY----IFSGPRGTGKTSIAKVFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +     +   P       +   +T   + DV+ ID      +  +  I +++ Y   E 
Sbjct: 61  AINCLNSADGEPCNEC--HICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSES 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++   +    I ATT    +   +  R         
Sbjct: 119 KYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISR-AQRFDFKA 177

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
             ++ +   ++  A    +   DEA   IA  S G  R A  ++    D A      T+T
Sbjct: 178 ISLDQIVERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIM----DQAIAFGDGTLT 233

Query: 243 REIADAALLRLA-IDKMGFDQL 263
                 AL     +     D L
Sbjct: 234 L---QDALNVTGSVHDEALDHL 252


>gi|57651359|ref|YP_185408.1| DNA polymerase III, gamma and tau subunits [Staphylococcus aureus
           subsp. aureus COL]
 gi|151220654|ref|YP_001331476.1| DNA polymerase III gamma subunit [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|221142547|ref|ZP_03567040.1| DNA polymerase III gamma subunit [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|258452484|ref|ZP_05700492.1| DNA polymerase III gamma subunit [Staphylococcus aureus A5948]
 gi|262049732|ref|ZP_06022598.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus
           D30]
 gi|262051991|ref|ZP_06024203.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus
           930918-3]
 gi|282924528|ref|ZP_06332198.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus A9765]
 gi|284023487|ref|ZP_06377885.1| DNA polymerase III gamma subunit [Staphylococcus aureus subsp.
           aureus 132]
 gi|57285545|gb|AAW37639.1| DNA polymerase III, gamma and tau subunits [Staphylococcus aureus
           subsp. aureus COL]
 gi|150373454|dbj|BAF66714.1| DNA polymerase III gamma subunit [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|257859884|gb|EEV82724.1| DNA polymerase III gamma subunit [Staphylococcus aureus A5948]
 gi|259160120|gb|EEW45152.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus
           930918-3]
 gi|259162194|gb|EEW46770.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus
           D30]
 gi|269940049|emb|CBI48425.1| DNA polymerase III, tau subunit [Staphylococcus aureus subsp.
           aureus TW20]
 gi|282592837|gb|EFB97842.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus A9765]
 gi|302750368|gb|ADL64545.1| DNA-directed DNA polymerase III gamma and tau subunits
           [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|315196724|gb|EFU27070.1| DNA polymerase III gamma subunit [Staphylococcus aureus subsp.
           aureus CGS01]
 gi|329313196|gb|AEB87609.1| DNA polymerase III gamma subunit [Staphylococcus aureus subsp.
           aureus T0131]
 gi|329725115|gb|EGG61608.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
           subsp. aureus 21189]
 gi|329730706|gb|EGG67087.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
           subsp. aureus 21193]
          Length = 565

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 52/262 (19%), Positives = 92/262 (35%), Gaps = 29/262 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RP++ E+  GQ      L+  I   K         +F GP G GKT++A+V A+
Sbjct: 5   ALYRMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAY----IFSGPRGTGKTSIAKVFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +     +   P       +   +T   + DV+ ID      +  +  I +++ Y   E 
Sbjct: 61  AINCLNSTDGEPCNEC--HICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSES 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++   +    I ATT    +   +  R         
Sbjct: 119 KYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISR-AQRFDFKA 177

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
             ++ +   ++  A    +   DEA   IA  S G  R A  ++    D A      T+T
Sbjct: 178 ISLDQIVERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIM----DQAIAFGDGTLT 233

Query: 243 REIADAALLRLA-IDKMGFDQL 263
                 AL     +     D L
Sbjct: 234 L---QDALNVTGSVHDEALDHL 252


>gi|110004993|emb|CAK99324.1| hypothetical dna helicase probably c-terminal truncated protein
           [Spiroplasma citri]
          Length = 106

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/118 (33%), Positives = 58/118 (49%), Gaps = 30/118 (25%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP   E++ GQ     NLK+ I A++ +   L H+LF+G  G+GKT L Q+         
Sbjct: 7   RPDNFEKYIGQESIKINLKIMIAASQKQQLPLKHMLFIGCSGMGKTCLMQI--------- 57

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
                                +  D++FIDEIH +S  V E LYP +ED  L+L++G+
Sbjct: 58  ---------------------KTFDLVFIDEIHAISQEVSEALYPVLEDNCLNLILGK 94


>gi|49482703|ref|YP_039927.1| DNA polymerase III, tau subunit [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|257424588|ref|ZP_05601017.1| DNA polymerase III [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257427254|ref|ZP_05603656.1| DNA polymerase III [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257429890|ref|ZP_05606277.1| DNA polymerase III [Staphylococcus aureus subsp. aureus 68-397]
 gi|257432593|ref|ZP_05608956.1| DNA polymerase III [Staphylococcus aureus subsp. aureus E1410]
 gi|257435498|ref|ZP_05611549.1| DNA polymerase III [Staphylococcus aureus subsp. aureus M876]
 gi|282903061|ref|ZP_06310954.1| DNA polymerase III, gamma and tau subunits [Staphylococcus aureus
           subsp. aureus C160]
 gi|282907450|ref|ZP_06315298.1| DNA polymerase III [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282907798|ref|ZP_06315638.1| DNA polymerase III, subunits gamma and tau [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282912683|ref|ZP_06320479.1| DNA polymerase III, subunits gamma and tau [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282913303|ref|ZP_06321095.1| DNA polymerase III, gamma and tau subunits [Staphylococcus aureus
           subsp. aureus M899]
 gi|282918257|ref|ZP_06325998.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus subsp.
           aureus C427]
 gi|282922931|ref|ZP_06330621.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus subsp.
           aureus C101]
 gi|283959906|ref|ZP_06377347.1| DNA polymerase III [Staphylococcus aureus subsp. aureus A017934/97]
 gi|293498350|ref|ZP_06666204.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293509291|ref|ZP_06668008.1| DNA polymerase III [Staphylococcus aureus subsp. aureus M809]
 gi|293550558|ref|ZP_06673230.1| DNA polymerase III, gamma and tau subunits [Staphylococcus aureus
           subsp. aureus M1015]
 gi|295427009|ref|ZP_06819648.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297588779|ref|ZP_06947420.1| DNA polymerase III, gamma/tau subunit DnaX [Staphylococcus aureus
           subsp. aureus MN8]
 gi|49240832|emb|CAG39499.1| DNA polymerase III, tau subunit [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|257273606|gb|EEV05708.1| DNA polymerase III [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257276885|gb|EEV08336.1| DNA polymerase III [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257280371|gb|EEV10958.1| DNA polymerase III [Staphylococcus aureus subsp. aureus 68-397]
 gi|257283472|gb|EEV13604.1| DNA polymerase III [Staphylococcus aureus subsp. aureus E1410]
 gi|257286094|gb|EEV16210.1| DNA polymerase III [Staphylococcus aureus subsp. aureus M876]
 gi|282315152|gb|EFB45538.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus subsp.
           aureus C101]
 gi|282317954|gb|EFB48322.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus subsp.
           aureus C427]
 gi|282323403|gb|EFB53722.1| DNA polymerase III, gamma and tau subunits [Staphylococcus aureus
           subsp. aureus M899]
 gi|282324379|gb|EFB54695.1| DNA polymerase III, subunits gamma and tau [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282328362|gb|EFB58635.1| DNA polymerase III, subunits gamma and tau [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282330349|gb|EFB59870.1| DNA polymerase III [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282597520|gb|EFC02479.1| DNA polymerase III, gamma and tau subunits [Staphylococcus aureus
           subsp. aureus C160]
 gi|283789498|gb|EFC28325.1| DNA polymerase III [Staphylococcus aureus subsp. aureus A017934/97]
 gi|290919605|gb|EFD96681.1| DNA polymerase III, gamma and tau subunits [Staphylococcus aureus
           subsp. aureus M1015]
 gi|291097281|gb|EFE27539.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291467930|gb|EFF10439.1| DNA polymerase III [Staphylococcus aureus subsp. aureus M809]
 gi|295129461|gb|EFG59088.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297577290|gb|EFH96003.1| DNA polymerase III, gamma/tau subunit DnaX [Staphylococcus aureus
           subsp. aureus MN8]
 gi|312436435|gb|ADQ75506.1| DNA polymerase III, gamma/tau subunit DnaX [Staphylococcus aureus
           subsp. aureus TCH60]
 gi|315193216|gb|EFU23615.1| DNA polymerase III, tau subunit [Staphylococcus aureus subsp.
           aureus CGS00]
          Length = 565

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 52/262 (19%), Positives = 92/262 (35%), Gaps = 29/262 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RP++ E+  GQ      L+  I   K         +F GP G GKT++A+V A+
Sbjct: 5   ALYRMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAY----IFSGPRGTGKTSIAKVFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +     +   P       +   +T   + DV+ ID      +  +  I +++ Y   E 
Sbjct: 61  AINCLNSTDGEPCNEC--HICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSES 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++   +    I ATT    +   +  R         
Sbjct: 119 KYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISR-AQRFDFKA 177

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
             ++ +   ++  A    +   DEA   IA  S G  R A  ++    D A      T+T
Sbjct: 178 ISLDQIVERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIM----DQAIAFGDGTLT 233

Query: 243 REIADAALLRLA-IDKMGFDQL 263
                 AL     +     D L
Sbjct: 234 L---QDALNVTGSVHDEALDHL 252


>gi|302308854|ref|NP_985969.2| AFR422Wp [Ashbya gossypii ATCC 10895]
 gi|299790827|gb|AAS53793.2| AFR422Wp [Ashbya gossypii ATCC 10895]
          Length = 349

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 49/260 (18%), Positives = 91/260 (35%), Gaps = 23/260 (8%)

Query: 1   MMDREGLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           +  ++ + +R+  +E    +   RPR L++   Q  A + LK  +E+A      L H+LF
Sbjct: 6   LFKKQKVSNRDEPEESKPWVEKYRPRKLDDVASQAHAITVLKRTLESA-----NLPHMLF 60

Query: 60  VGPPGLGKTTLAQVVARE------LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDE 113
            GPPG GKT+    + +E      +       +         +   + N     V     
Sbjct: 61  YGPPGTGKTSTILALTKELFGPSLMKSRVLELNASDERGISIVREKVKNFARLTV----- 115

Query: 114 IHRLSIIVEEILYPAMEDFQLDLMVGEGPSA-----RSVKINLSRFTLIAATTRVGLLTN 168
            +     +E+   P  +   LD        A     R+++   S          V  + +
Sbjct: 116 TNPTKEDLEQYPCPPYKIIILDEADSMTADAQSALRRTMETYSSVTRFCLICNYVTRIID 175

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
           PL  R           +  L   +++ A+   L+    A  ++   + G  R A  LL+ 
Sbjct: 176 PLASRCSKFRFKPLDNVNALGR-LEQIAQQEALSYEAGALEKVLHIAEGDLRKAITLLQT 234

Query: 229 VRDFAEVAHAKTITREIADA 248
                    A+ IT    + 
Sbjct: 235 AAKMTSYMAAEKITIAQVEE 254


>gi|294850658|ref|ZP_06791381.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus A9754]
 gi|294822495|gb|EFG38941.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus A9754]
          Length = 565

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 52/262 (19%), Positives = 92/262 (35%), Gaps = 29/262 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RP++ E+  GQ      L+  I   K         +F GP G GKT++A+V A+
Sbjct: 5   ALYRMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAY----IFSGPRGTGKTSIAKVFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +     +   P       +   +T   + DV+ ID      +  +  I +++ Y   E 
Sbjct: 61  AINCLNSTDGEPCNEC--HICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSES 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++   +    I ATT    +   +  R         
Sbjct: 119 KYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISR-AQRFDFKA 177

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
             ++ +   ++  A    +   DEA   IA  S G  R A  ++    D A      T+T
Sbjct: 178 ISLDQIVERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIM----DQAIAFGDGTLT 233

Query: 243 REIADAALLRLA-IDKMGFDQL 263
                 AL     +     D L
Sbjct: 234 L---QDALNVTGSVHDEALDHL 252


>gi|283469770|emb|CAQ48981.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus subsp.
           aureus ST398]
          Length = 565

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 52/262 (19%), Positives = 92/262 (35%), Gaps = 29/262 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RP++ E+  GQ      L+  I   K         +F GP G GKT++A+V A+
Sbjct: 5   ALYRMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAY----IFSGPRGTGKTSIAKVFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +     +   P       +   +T   + DV+ ID      +  +  I +++ Y   E 
Sbjct: 61  AINCLNSTDGEPCNEC--HICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSES 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++   +    I ATT    +   +  R         
Sbjct: 119 KYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISR-AQRFDFKA 177

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
             ++ +   ++  A    +   DEA   IA  S G  R A  ++    D A      T+T
Sbjct: 178 ISLDQIVERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIM----DQAIAFGDGTLT 233

Query: 243 REIADAALLRLA-IDKMGFDQL 263
                 AL     +     D L
Sbjct: 234 L---QDALNVTGSVHDEALDHL 252


>gi|15923468|ref|NP_371002.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|15926155|ref|NP_373688.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus
           subsp. aureus N315]
 gi|148266936|ref|YP_001245879.1| DNA polymerase III, subunits gamma and tau [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150392982|ref|YP_001315657.1| DNA polymerase III, subunits gamma and tau [Staphylococcus aureus
           subsp. aureus JH1]
 gi|156978806|ref|YP_001441065.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|253315726|ref|ZP_04838939.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus
           subsp. aureus str. CF-Marseille]
 gi|255005271|ref|ZP_05143872.2| DNA polymerase III gamma and tau subunits [Staphylococcus aureus
           subsp. aureus Mu50-omega]
 gi|257795401|ref|ZP_05644380.1| DNA polymerase III, gamma and tau subunits [Staphylococcus aureus
           A9781]
 gi|258421451|ref|ZP_05684378.1| DNA polymerase III gamma and tau [Staphylococcus aureus A9719]
 gi|258436850|ref|ZP_05689190.1| DNA polymerase III gamma and tau [Staphylococcus aureus A9299]
 gi|258445643|ref|ZP_05693823.1| DNA polymerase III gamma and tau [Staphylococcus aureus A6300]
 gi|258456009|ref|ZP_05703964.1| DNA polymerase III gamma and tau [Staphylococcus aureus A5937]
 gi|282927511|ref|ZP_06335129.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus A10102]
 gi|295405726|ref|ZP_06815536.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus A8819]
 gi|296276913|ref|ZP_06859420.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus
           subsp. aureus MR1]
 gi|297245635|ref|ZP_06929503.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus A8796]
 gi|13700368|dbj|BAB41666.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus
           subsp. aureus N315]
 gi|14246246|dbj|BAB56640.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|147740005|gb|ABQ48303.1| DNA polymerase III, tau subunit [Staphylococcus aureus subsp.
           aureus JH9]
 gi|149945434|gb|ABR51370.1| DNA polymerase III, subunits gamma and tau [Staphylococcus aureus
           subsp. aureus JH1]
 gi|156720941|dbj|BAF77358.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|257789373|gb|EEV27713.1| DNA polymerase III, gamma and tau subunits [Staphylococcus aureus
           A9781]
 gi|257842875|gb|EEV67297.1| DNA polymerase III gamma and tau [Staphylococcus aureus A9719]
 gi|257848641|gb|EEV72628.1| DNA polymerase III gamma and tau [Staphylococcus aureus A9299]
 gi|257855593|gb|EEV78528.1| DNA polymerase III gamma and tau [Staphylococcus aureus A6300]
 gi|257862221|gb|EEV84994.1| DNA polymerase III gamma and tau [Staphylococcus aureus A5937]
 gi|282590835|gb|EFB95911.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus A10102]
 gi|285816177|gb|ADC36664.1| DNA polymerase III subunits gamma and Tau [Staphylococcus aureus
           04-02981]
 gi|294969801|gb|EFG45820.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus A8819]
 gi|297177621|gb|EFH36872.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus A8796]
 gi|312828973|emb|CBX33815.1| DNA polymerase III, subunits gamma and tau [Staphylococcus aureus
           subsp. aureus ECT-R 2]
 gi|315130108|gb|EFT86097.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus
           subsp. aureus CGS03]
 gi|329725750|gb|EGG62229.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
           subsp. aureus 21172]
          Length = 565

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 52/262 (19%), Positives = 92/262 (35%), Gaps = 29/262 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RP++ E+  GQ      L+  I   K         +F GP G GKT++A+V A+
Sbjct: 5   ALYRMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAY----IFSGPRGTGKTSIAKVFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +     +   P       +   +T   + DV+ ID      +  +  I +++ Y   E 
Sbjct: 61  AINCLNSTDGEPCNEC--HICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSES 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++   +    I ATT    +   +  R         
Sbjct: 119 KYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISR-AQRFDFKA 177

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
             ++ +   ++  A    +   DEA   IA  S G  R A  ++    D A      T+T
Sbjct: 178 ISLDQIVERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIM----DQAIAFGDGTLT 233

Query: 243 REIADAALLRLA-IDKMGFDQL 263
                 AL     +     D L
Sbjct: 234 L---QDALNVTGSVHDEALDHL 252


>gi|167957160|ref|ZP_02544234.1| DNA polymerase III subunit gamma/tau [candidate division TM7
           single-cell isolate TM7c]
 gi|332878578|ref|ZP_08446298.1| DNA polymerase III, subunit gamma and tau [Capnocytophaga sp. oral
           taxon 329 str. F0087]
 gi|332683479|gb|EGJ56356.1| DNA polymerase III, subunit gamma and tau [Capnocytophaga sp. oral
           taxon 329 str. F0087]
          Length = 362

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 62/284 (21%), Positives = 99/284 (34%), Gaps = 49/284 (17%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP++  +  GQ    + L   IE           +LF GP G+GKTT A+++A+++
Sbjct: 8   ARKYRPQSFRDVVGQQAITNTLLNAIENNHLAQA----LLFTGPRGVGKTTCARILAKKI 63

Query: 79  G------------VNFRSTSGPVIAKAGDLAALLT------NLEDRDVLFIDEIHRLSII 120
                         N             D+  L+        + +  V  IDE+H LS  
Sbjct: 64  NEQSGVTDDNDFAFNVFELDAASNNSVDDIRKLIEQVRIPPQVGNYKVYIIDEVHMLSTA 123

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                   +E+                         I ATT    +   +  R  I    
Sbjct: 124 AFNAFLKTLEE------------------PPKHAIFILATTEKHKIIPTILSRCQIFDFK 165

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
               I D++  ++  A+  G+   DEA   IA ++ G  R A  +  RV  F+     + 
Sbjct: 166 RI-TISDIREYLKYIAEQQGIEAEDEALQIIAQKADGAMRDALSIFDRVVSFSGDKITRQ 224

Query: 241 ITREIADAALLRLAIDKMGFDQLDLR-------YLTMIARNFGG 277
            T EI +  L      K+    LD +         T+IA+ F G
Sbjct: 225 ATSEILN-VLDYEVYFKVTDLILDNKLPDLLLELNTVIAQGFDG 267


>gi|150392457|ref|YP_001322506.1| DNA polymerase III subunits gamma and tau [Alkaliphilus
           metalliredigens QYMF]
 gi|149952319|gb|ABR50847.1| DNA polymerase III, subunits gamma and tau [Alkaliphilus
           metalliredigens QYMF]
          Length = 559

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 79/224 (35%), Gaps = 21/224 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPR  E+  GQ      LK  IEA           LF G  G GKT+ A++ AR +    
Sbjct: 11  RPRIFEDVIGQDHVIKTLKNQIEA----NNVAHAYLFSGTRGTGKTSTAKIFARAVNCKD 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P   +      ++T     DV+ ID      +  +  I E + YP  +      +
Sbjct: 67  EQNVNP-CNECEVCQGIITE-SIMDVIEIDAASNNGVDHIREIRENVKYPPSKGKYKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT    L   +  R            + +
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPPHVIFILATTEPQKLPATILSRCQRFDFKPVKTDDMM 184

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           K +V    K   +   +EA   +AM + G  R A  +L +   F
Sbjct: 185 KQLV-YICKSMDINAEEEALRVVAMNAEGALRDALSILEQCISF 227


>gi|70606693|ref|YP_255563.1| replication factor C small subunit [Sulfolobus acidocaldarius DSM
           639]
 gi|73914011|sp|Q4JAB0|RFCS_SULAC RecName: Full=Replication factor C small subunit; Short=RFC small
           subunit; AltName: Full=Clamp loader small subunit
 gi|68567341|gb|AAY80270.1| replication factor C [Sulfolobus acidocaldarius DSM 639]
          Length = 325

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 47/237 (19%), Positives = 89/237 (37%), Gaps = 37/237 (15%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           + +E       RP++L+E   Q E    LK F++      + + H+LF GPPG GKTT A
Sbjct: 1   MEEEILWAEKYRPKSLDEIVNQKEIVERLKKFVK-----EKNMPHLLFAGPPGTGKTTAA 55

Query: 72  QVVAR------------ELGVNFRSTSGPVIAKAGDLAA-LLTNLEDRDVLFIDEIHRLS 118
             + R            EL  +       +  K  + A  + +N     V+ +DE   ++
Sbjct: 56  LALVRDLYGNNYRQYFLELNASDERGIDVIRNKVKEFARTVASNNVPFKVILLDEADNMT 115

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
              ++ L   ME      +  E                I A   +  +  P+Q R  +  
Sbjct: 116 ADAQQALRRTME------LYTETTRF------------ILACNYLSKIIEPIQSRTALFR 157

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
                + + +  ++Q  AK   +    +    I   ++G  R A  +++    + ++
Sbjct: 158 FYPLKKEDVVNRLIQ-IAKNEKVEFDPKGIETIFDITQGDMRKAINVIQAASAYGKI 213


>gi|258413427|ref|ZP_05681702.1| DNA polymerase III subunits gamma and tau [Staphylococcus aureus
           A9763]
 gi|257839674|gb|EEV64143.1| DNA polymerase III subunits gamma and tau [Staphylococcus aureus
           A9763]
          Length = 565

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 52/262 (19%), Positives = 92/262 (35%), Gaps = 29/262 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RP++ E+  GQ      L+  I   K         +F GP G GKT++A+V A+
Sbjct: 5   ALYRMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAY----IFSGPRGTGKTSIAKVFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +     +   P       +   +T   + DV+ ID      +  +  I +++ Y   E 
Sbjct: 61  AINCLNSTDGEPCNEC--HICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSES 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++   +    I ATT    +   +  R         
Sbjct: 119 KYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISR-AQRFDFKA 177

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
             ++ +   ++  A    +   DEA   IA  S G  R A  ++    D A      T+T
Sbjct: 178 ISLDQIVERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIM----DQAIAFGDGTLT 233

Query: 243 REIADAALLRLA-IDKMGFDQL 263
                 AL     +     D L
Sbjct: 234 L---QDALNVTGSVHDEALDHL 252


>gi|70727533|ref|YP_254449.1| DNA polymerase III subunits gamma and tau [Staphylococcus
           haemolyticus JCSC1435]
 gi|68448259|dbj|BAE05843.1| DNA polymerase III gamma and tau subunits [Staphylococcus
           haemolyticus JCSC1435]
          Length = 571

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 51/274 (18%), Positives = 97/274 (35%), Gaps = 22/274 (8%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RP++ ++  GQ      L+  I   K         +F GP G GKT++A+V A+
Sbjct: 5   ALYRMFRPQSFQDVVGQEHVTKTLRNAISKGKQSHAY----IFSGPRGTGKTSIAKVFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +         P    A  +   +T   + DV+ ID      +  +  I +++ Y   E 
Sbjct: 61  AINCLNPQDGEPCNECA--ICKGITQGTNGDVIEIDAASNNGVDEIRNIRDKVKYAPSES 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++   +    I ATT    +   +  R         
Sbjct: 119 KYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISR-AQRFDFKA 177

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
              E +   ++  A+   L   +EA   IA  S G  R A  ++ +   F +  H     
Sbjct: 178 IGTEQITDRLRFVAEEQQLDYDNEALEFIAKASEGGMRDALSIMDQAIAFGD-EHLTLQD 236

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFG 276
                 ++   A++++  D +D        R   
Sbjct: 237 ALDVTGSVDEAALNELFKDVIDGNVKNAFTRYHQ 270


>gi|222445467|ref|ZP_03607982.1| hypothetical protein METSMIALI_01106 [Methanobrevibacter smithii
           DSM 2375]
 gi|261349971|ref|ZP_05975388.1| replication factor C small subunit [Methanobrevibacter smithii DSM
           2374]
 gi|222435032|gb|EEE42197.1| hypothetical protein METSMIALI_01106 [Methanobrevibacter smithii
           DSM 2375]
 gi|288860754|gb|EFC93052.1| replication factor C small subunit [Methanobrevibacter smithii DSM
           2374]
          Length = 315

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 81/226 (35%), Gaps = 36/226 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+ L++  GQ +  + L+ ++       E++ +++F GP G+GKTT A  + +
Sbjct: 4   PWVEKYRPQNLDDIIGQKQIVNRLQKYV-----GEESMPNLMFTGPAGVGKTTTAIALVK 58

Query: 77  E-----LGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEI 124
                    NF   +         +   + N            ++F+DE+  ++   +  
Sbjct: 59  AILGEYWRQNFLELNASDARGIDTVRNDIKNFCRLKPVGAPFRIIFLDEVDNMTKDAQHA 118

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           L   ME +                      + I +      + +P+Q R  I  R    +
Sbjct: 119 LRREMEMYTKT------------------ASFILSCNYSSKIIDPIQSRCAI-FRFGPIK 159

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
            E++   ++      G   TD     I   + G  R A  +L+   
Sbjct: 160 GEEIANRLKYICTSEGFEYTDGGIEAIEYFAEGDMRKAVNVLQAAA 205


>gi|253742391|gb|EES99226.1| Replication factor C, subunit 4 [Giardia intestinalis ATCC 50581]
          Length = 322

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 58/246 (23%), Positives = 92/246 (37%), Gaps = 42/246 (17%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           I   RPRTL+   G  E    L+ F     A    L ++L  G PGLGKTT+A  +A ++
Sbjct: 7   IERYRPRTLDGLIGNPEILRRLRYF-----AAQGNLPNILLTGGPGLGKTTIALCLANQM 61

Query: 79  GVNFRST-----SGPVIAKAGDLAALLTNLEDRDV---------LFIDEIHRLSIIVEEI 124
             + RS      +        D+ A +     + V         +F+DE   ++   +++
Sbjct: 62  LGSNRSEAFLELNASDERNVSDIRAKVKTFAQKQVTLPAGIQKLVFLDECDAMTEAAQQV 121

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           L   M+D        E  S R             A   +  +  P+Q R  +   +   +
Sbjct: 122 LRRIMDD--------ETGSTR----------FCLACNNISKVIEPVQSRCCVLRIMPATQ 163

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            E L   +Q   +  G+    EA  E+   S    R     L+ V D    A+ K +T  
Sbjct: 164 AE-LIKYLQDICEKEGVKSDTEALKELITISGNDIRSCLNSLQLVMD----ANNKVVTVA 218

Query: 245 IADAAL 250
               AL
Sbjct: 219 GVQKAL 224


>gi|218884000|ref|YP_002428382.1| replication factor C small subunit [Desulfurococcus kamchatkensis
           1221n]
 gi|218765616|gb|ACL11015.1| replication factor C small subunit [Desulfurococcus kamchatkensis
           1221n]
          Length = 326

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 52/234 (22%), Positives = 83/234 (35%), Gaps = 37/234 (15%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E       RPRTL+E   Q E    LK F+E      + + H+LF GPPG GKTT+A  +
Sbjct: 6   ELLWAEKYRPRTLDEVVNQKEVVVRLKKFVE-----EKNIPHMLFAGPPGTGKTTIAHCL 60

Query: 75  AR-----ELGVNFRSTSGPVIAKAGDLAALLTNLED--------RDVLFIDEIHRLSIIV 121
           A      +        +     K   +   +               ++ +DE   ++   
Sbjct: 61  AHDLYGDDYRKYMLELNASDERKIEVIRGKVKEFARTRVVGDVPFKIVLLDEADNMTADA 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           ++ L   ME +                   +RF L A       +  P+Q R  I  R +
Sbjct: 121 QQALRRLMELYSAT----------------TRFILTA--NYPSKIIEPIQSRTAI-FRFS 161

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
               ED+   ++       +   ++A   I   S G  R A  +L+      EV
Sbjct: 162 PLSREDVVGRLKYICNAEKIECAEKALETIYELSEGDMRRAINILQTAAALGEV 215


>gi|118431492|ref|NP_147998.2| replication factor C large subunit [Aeropyrum pernix K1]
 gi|42559546|sp|Q9YBS5|RFCL_AERPE RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|116062817|dbj|BAA80523.2| replication factor C large subunit [Aeropyrum pernix K1]
          Length = 479

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 82/223 (36%), Gaps = 24/223 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAA-KARAEALDHVLFVGPPGLGKTTLAQVVA 75
             +   RP+ +E+   Q +A   L  + +A  + R       L  GPPG+GKT+L + +A
Sbjct: 11  PWVIKYRPKRVEDVVNQDQAKKILVPWFKAWLEGRKPDKRAALLYGPPGVGKTSLVEAIA 70

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPA 128
            E  +     +     +  D+  ++          +   V+ +DE+  ++   +      
Sbjct: 71  SEFNLEMIELNASDYRRRSDIERIVGAASRKRSMFKRGVVILLDEVDGINPREDAG---G 127

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +E     +   E P   +       F              PL++   + +      +  +
Sbjct: 128 IEALLSVIKTTENPIVMTANDPWKDF------------LRPLRE-VSLMVEFRPLTLTHI 174

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
             ++QR  +   +    EA   IA RS G  R A   L+ V +
Sbjct: 175 VAVLQRICEAERIECEREALRYIAERSEGDLRSAINDLQAVAE 217


>gi|218779844|ref|YP_002431162.1| DNA polymerase III, subunits gamma and tau [Desulfatibacillum
           alkenivorans AK-01]
 gi|218761228|gb|ACL03694.1| DNA polymerase III, subunits gamma and tau [Desulfatibacillum
           alkenivorans AK-01]
          Length = 706

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 89/232 (38%), Gaps = 27/232 (11%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARE 77
               RP+T +E   Q      LK  I       E + H L   GP G GKTT+A+++A+ 
Sbjct: 7   ARKYRPQTFDEVVAQPHITETLKNAI-----NQERVAHALCLSGPRGTGKTTVARILAKA 61

Query: 78  LGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAM 129
           +      T  P  V A   ++AA        DV  ID     S+     L       PA+
Sbjct: 62  MNCVNGPTPEPCGVCASCKEIAASNAV----DVFEIDGASNNSVEQVRELRENVQYAPAL 117

Query: 130 EDFQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
            ++++ ++               ++++        I ATT    +   +  R        
Sbjct: 118 GNYKVYIIDEVHMLSQAAFNALLKTLEEPPPHVMFILATTESHKIPVTILSRCQRYDFKR 177

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
              ++D+   + + A L    + +++   +A RS G  R A  LL +V  ++
Sbjct: 178 I-SLDDIVGHLAKLAGLENFTIEEQSLWAVARRSGGCMRDALSLLDQVMAYS 228


>gi|148643236|ref|YP_001273749.1| replication factor C small subunit [Methanobrevibacter smithii ATCC
           35061]
 gi|158513780|sp|A5UMF3|RFCS_METS3 RecName: Full=Replication factor C small subunit; Short=RFC small
           subunit; AltName: Full=Clamp loader small subunit
 gi|148552253|gb|ABQ87381.1| replication factor C, small subunit, RfcS [Methanobrevibacter
           smithii ATCC 35061]
          Length = 315

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 80/226 (35%), Gaps = 36/226 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+ L++  GQ +  + L+ ++       E++ +++F GP G+GKTT A  + +
Sbjct: 4   PWVEKYRPQNLDDIIGQKQIVNRLQKYV-----GEESMPNLMFTGPAGVGKTTTAIALVK 58

Query: 77  E-----LGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEI 124
                    NF   +         +   + N            ++F+DE+  ++   +  
Sbjct: 59  AILGEYWRQNFLELNASDARGIDTVRNDIKNFCRLKPVGAPFRIIFLDEVDNMTKDAQHA 118

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           L   ME +                      + I +      + +P+Q R  I  R    +
Sbjct: 119 LRREMEMYTKT------------------ASFILSCNYSSKIIDPIQSRCAI-FRFGPIK 159

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
            E++   ++          TD     I   + G  R A  +L+   
Sbjct: 160 GEEIANRLKYICTSERFEYTDGGIEAIEYFAEGDMRKAVNVLQAAA 205


>gi|18311617|ref|NP_563551.1| ATP-dependent proteinase La [Clostridium perfringens str. 13]
 gi|110800560|ref|YP_697325.1| ATP-dependent protease [Clostridium perfringens ATCC 13124]
 gi|110803724|ref|YP_699884.1| ATP-dependent protease [Clostridium perfringens SM101]
 gi|18146301|dbj|BAB82341.1| probable ATP-dependent proteinase La [Clostridium perfringens str.
           13]
 gi|110675207|gb|ABG84194.1| ATP-dependent protease [Clostridium perfringens ATCC 13124]
 gi|110684225|gb|ABG87595.1| ATP-dependent protease [Clostridium perfringens SM101]
          Length = 619

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 60/291 (20%), Positives = 101/291 (34%), Gaps = 57/291 (19%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +SLLRP + +E  GQ  A  +L      +K  +    H++  GPPG+GKTT A++     
Sbjct: 150 MSLLRPDSFDEVVGQERAVKSL-----LSKLASPYPQHIILYGPPGVGKTTAARIALETA 204

Query: 79  G----------------------VNFRSTSGPVIAKA---------GDLAAL-------- 99
                                   + R  + P++             DLA +        
Sbjct: 205 KKLKSTPFDDRSKFIEVNGTTLRWDPREITNPLLGSVHDPIYQGSKRDLAEIGVPEPKPG 264

Query: 100 -LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV------GEGPSARSVKIN-- 150
            +T      +LFIDEI  L  I++  L   +ED +++          E        +   
Sbjct: 265 LVTEAHGG-ILFIDEIGELDEILQNKLLKVLEDKRVEFSSSYYDPDDENTPKYIKYLFDK 323

Query: 151 --LSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAA 208
              + F LI ATTR     NP        +        D++ IV   AK   + + +   
Sbjct: 324 GAPADFVLIGATTREPGEINPALRSRCTEVYFEPLSSRDIEKIVLNAAKKLNVKLEEGLE 383

Query: 209 CEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259
            +IA  +    R A  +L      A       +  ++   +     +  +G
Sbjct: 384 KKIASYT-IEGRRAVNILADAYGHAIYGLEGEVPEDLEITSKDLNEVVSIG 433


>gi|288928509|ref|ZP_06422356.1| DNA polymerase III, gamma and tau subunit [Prevotella sp. oral
           taxon 317 str. F0108]
 gi|288331343|gb|EFC69927.1| DNA polymerase III, gamma and tau subunit [Prevotella sp. oral
           taxon 317 str. F0108]
          Length = 608

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 47/254 (18%), Positives = 94/254 (37%), Gaps = 24/254 (9%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP + +   GQ    + LK  +++ K         LF GP G+GKTT A++ A+ +
Sbjct: 8   ARKYRPVSFDSVVGQSALTTTLKNAVKSGKLAHAY----LFCGPRGVGKTTCARIFAKAI 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI------IVEEILYPAMEDF 132
                +  G          A   +    ++  +D     S+      + +  + P +  +
Sbjct: 64  NCLTPTEMGEACNHCESCQA-FNDQRSYNIFELDAASNNSVENIKTLMDQTRIPPQVGKY 122

Query: 133 QLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           ++ ++               ++++   +    I ATT    +   +  R  I        
Sbjct: 123 KVFIIDEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQIYDFERM-T 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +  +   ++R A+  G+A  +EA   IA ++ G  R A  +  +   FA+      +T +
Sbjct: 182 VPGIIDHLKRVAENEGIAYEEEALAVIAEKADGGMRDALSIFDQAASFAQ----GNLTYD 237

Query: 245 IADAALLRLAIDKM 258
              A L  L  D  
Sbjct: 238 SVIADLNVLDSDNY 251


>gi|126664260|ref|ZP_01735252.1| putative DNA polymerase III [Flavobacteria bacterium BAL38]
 gi|126623792|gb|EAZ94488.1| putative DNA polymerase III [Flavobacteria bacterium BAL38]
          Length = 357

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 79/233 (33%), Gaps = 41/233 (17%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+T ++  GQ    + L   IE           +LF GP G+GKTT A+++AR++
Sbjct: 8   ARKYRPQTFKDVVGQQAITNTLLNAIETNHLAQA----LLFTGPRGVGKTTCARILARKI 63

Query: 79  G------------VNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSII 120
                         N             D+ +++  +          V  IDE+H LS  
Sbjct: 64  NQEGYDDPYEDFSFNVFELDAASNNGVDDIRSIIDQVRIPPQTGKYKVYIIDEVHMLSTS 123

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                   +E+                         I ATT    +   +  R  I    
Sbjct: 124 AFNAFLKTLEE------------------PPKHAIFILATTEKHKIIPTILSRCQIFDFK 165

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
               I+D K  +   A   G+   D+A   IA ++ G  R A  +  RV  + 
Sbjct: 166 RI-TIKDAKNHLAEIANEQGVTFEDDALHIIAQKADGAMRDALSIFDRVVSYC 217


>gi|300870618|ref|YP_003785489.1| DNA polymerase III subunits gamma and tau [Brachyspira pilosicoli
           95/1000]
 gi|300688317|gb|ADK30988.1| DNA polymerase III, subunits gamma and tau [Brachyspira pilosicoli
           95/1000]
          Length = 521

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 59/275 (21%), Positives = 98/275 (35%), Gaps = 53/275 (19%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+T EE  GQ          I  + A+ +     LF G  G+GKT+LA+++A+ L
Sbjct: 9   ARKYRPQTFEEVIGQEHITKT----ISKSIAQKKIAHAYLFSGAHGVGKTSLARIIAKAL 64

Query: 79  GV------------------------NFRSTSGPVIAKAGDLAALLTN------LEDRDV 108
                                     +     G       ++  ++ N           V
Sbjct: 65  NCVNGPTDKPCGVCPSCTQIENGTPLDVIEIDGASNRGIENIRTIIENVRISPVAGKYKV 124

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
             IDE+H+++      L   +E+          P A  V I         ATT    +  
Sbjct: 125 YIIDEVHQITNEAFNALLKTLEE----------PPAHVVFIL--------ATTEADRVLP 166

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            ++ R    I  +   IEDL+ I++       +A  DEA   IA ++RG+ R +  +L +
Sbjct: 167 TIRSRCQQYIFKSL-GIEDLEKILKGILDKENIAYDDEAIFLIAKQARGSVRDSETILEK 225

Query: 229 VRDFAEVAHAKTITREIADAALLRLAIDKMGFDQL 263
           +  +       T    IA       +  K  FD +
Sbjct: 226 MIAYTADKKHITSGDVIAVVGGNNFSFVKDFFDVM 260


>gi|15920690|ref|NP_376359.1| replication factor C small subunit [Sulfolobus tokodaii str. 7]
 gi|42559516|sp|Q975D3|RFCS_SULTO RecName: Full=Replication factor C small subunit; Short=RFC small
           subunit; AltName: Full=Clamp loader small subunit
 gi|15621473|dbj|BAB65468.1| 327aa long hypothetical replication factor C small subunit
           [Sulfolobus tokodaii str. 7]
          Length = 327

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 49/238 (20%), Positives = 88/238 (36%), Gaps = 37/238 (15%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           ++ +E       RPR+L++   Q +    LK F++      + + H+LF GPPG GKTT 
Sbjct: 2   SLEEEILWAEKYRPRSLDDIVNQKDIVERLKRFVK-----DKNMPHLLFSGPPGTGKTTA 56

Query: 71  AQVVAR------------ELGVNFRSTSGPVIAKAGDLAALLTNLE-DRDVLFIDEIHRL 117
           A  +              EL  +       +  K  + A  +        V+ +DE   +
Sbjct: 57  ALALVHDLYGDNYRQYFLELNASDERGIDVIRNKVKEFARTVAGGNVPFKVVLLDEADNM 116

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           +   ++ L   ME      +  E                I A   +  +  P+Q R  + 
Sbjct: 117 TADAQQALRRTME------LYTETTRF------------ILACNYLSKIIEPIQSRTAL- 157

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
            R    + ED+   +   AK   +    +A   I   ++G  R A  +L+    + +V
Sbjct: 158 FRFYPLKKEDVVARLAYIAKNEKVEYDQKALETIYDITQGDMRKAINILQASSVYGKV 215


>gi|167628599|ref|YP_001679098.1| ATP-dependent protease lonb, putative [Heliobacterium modesticaldum
           Ice1]
 gi|167591339|gb|ABZ83087.1| ATP-dependent protease lonb, putative [Heliobacterium modesticaldum
           Ice1]
          Length = 563

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 65/298 (21%), Positives = 105/298 (35%), Gaps = 65/298 (21%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MM R  L        +      RP T EE  GQ +    LK     A        HV+  
Sbjct: 47  MMRRIALT-------EPLAEKTRPTTFEEIIGQDDGIRALK-----AALCGPNPQHVIIY 94

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDV------------ 108
           GPPG+GKT  A++V  E   N  S    V AK  ++       ++R +            
Sbjct: 95  GPPGVGKTAAARLVLEEAKKNPLSPFS-VQAKFIEIDGATARFDERGIADPLIGSVHDPI 153

Query: 109 ---------------------------LFIDEIHRLSIIVEEILYPAMEDFQLDL----M 137
                                      LFIDE+  L  I    L   +ED ++ L     
Sbjct: 154 YQGAGALGMAGIPQPKPGAVTKAHGGVLFIDEVGELHPIQINKLLKVLEDRKVLLESAYY 213

Query: 138 VGEGPSARSVKINL------SRFTLIAATTRV-GLLTNPLQDRFGIPIRLNFYEIEDLKT 190
             E  +  S   ++      + F LI ATTR+   + + ++ R  + +       E++  
Sbjct: 214 SSEDQNIPSHIHDIFQKGLPADFRLIGATTRLPQEIPSAIRSRC-LEVFFRPLTQEEIGA 272

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  R AK   +A+ ++ A E+  R     R A  +++     A       ++ E  + 
Sbjct: 273 VACRAAKKMDMAIPEK-AVEVIRRYATNGREAVNIVQISAGLALARGVNVLSVEDVEW 329


>gi|296241870|ref|YP_003649357.1| replication factor C large subunit [Thermosphaera aggregans DSM
           11486]
 gi|296094454|gb|ADG90405.1| replication factor C large subunit [Thermosphaera aggregans DSM
           11486]
          Length = 430

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 85/222 (38%), Gaps = 24/222 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             I   RPRT+E+   Q +A +    ++E      +    VL  GP G GKT+L + VAR
Sbjct: 6   PWIIKYRPRTIEDVVNQEDAKNAFLNWLENWGKPGQK-KAVLLHGPAGCGKTSLVEAVAR 64

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAM 129
             G      +     +  D+ ++             R ++ +DE+  ++   +E     +
Sbjct: 65  SKGYQLFEMNASDFRRKSDIESIAKIAAQTSGLTGKRKIILLDEVDGINARADEG---GI 121

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           E     + V + P   +     S+               PL+    + I +       + 
Sbjct: 122 EAIIELINVSKNPIVMTANNPYSK------------NLLPLRQNV-LEIPMKRLSETHVV 168

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
           T +++      +  +DEA  EIA RS G  R A   L+ + +
Sbjct: 169 TALKKICGAEKIECSDEALREIAKRSEGDLRSAINDLQAIAE 210


>gi|311069314|ref|YP_003974237.1| LonB ATP-dependent protease [Bacillus atrophaeus 1942]
 gi|310869831|gb|ADP33306.1| LonB ATP-dependent protease [Bacillus atrophaeus 1942]
          Length = 552

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 59/296 (19%), Positives = 104/296 (35%), Gaps = 57/296 (19%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M++   + R++   +     +RP++ ++  GQ +    LK     A        HV+  G
Sbjct: 44  MEQLRKM-RSIRLSEPLSEKVRPKSFQDIVGQEDGIKALK-----AALCGPNPQHVIIYG 97

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSG----------------------PVIAKAGD---- 95
           PPG+GKT  A++V  E   + +S                         P+I    D    
Sbjct: 98  PPGVGKTAAARLVLEEAKKHKQSPFNEQAVFVELDATTARFDERGIADPLIGSVHDPIYQ 157

Query: 96  -------------LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL----MV 138
                            +T+     VLFIDEI  L  I    +   +ED ++ L      
Sbjct: 158 GAGAMGQAGIPQPKQGAVTHAHGG-VLFIDEIGELHPIQMNKMLKVLEDRKVFLDSAYYS 216

Query: 139 GEGPSARSVKINL------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            E     +   ++      + F LI ATTR+     P      + +     E ++LK + 
Sbjct: 217 EENTQIPNHIHDIFQNGLPADFRLIGATTRMPNEIPPAIRSRCLEVFFRELEKDELKAVA 276

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  A      ++D+    +   +R   R    +++     A     K IT E  + 
Sbjct: 277 KTAADKIQKDISDKGLDLLTSYTRN-GREVVNMIQIAAGMAVTEERKDITIEDVEW 331


>gi|325968175|ref|YP_004244367.1| replication factor C small subunit [Vulcanisaeta moutnovskia
           768-28]
 gi|323707378|gb|ADY00865.1| replication factor C small subunit [Vulcanisaeta moutnovskia
           768-28]
          Length = 338

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 52/233 (22%), Positives = 88/233 (37%), Gaps = 37/233 (15%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   +   RP  +++   Q E    +K  ++        + H+LF GPPG GKTT+A  +
Sbjct: 5   ELIWVEKYRPSRIDDIIDQEEVKERVKQLLKTG-----NMPHMLFYGPPGTGKTTMALAI 59

Query: 75  ARE-----LGVNFRSTSGPVIAKAGDLAALLTNLED--------RDVLFIDEIHRLSIIV 121
           ARE        N    +         +   +               ++ +DE   ++   
Sbjct: 60  ARELYGDAWRENVLELNASDERGITTIRERVKEFARTAPMGKAPYKLIILDEADNMTSDA 119

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           ++ L   ME +                 N++RF LIA    V  + +P+Q R  +  R +
Sbjct: 120 QQALRRMMEMY----------------ANVTRFILIA--NYVSRIIDPIQSRCAM-FRFS 160

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
               + +   ++  A   G+ VTDEA   I   S+G  R A   L+     A 
Sbjct: 161 PLPKDAVLGRLRDIASREGVKVTDEALEAIWDISQGDMRKAINTLQAATATAR 213


>gi|326336645|ref|ZP_08202813.1| DNA polymerase III, gamma/tau subunit DnaX [Capnocytophaga sp. oral
           taxon 338 str. F0234]
 gi|325691115|gb|EGD33086.1| DNA polymerase III, gamma/tau subunit DnaX [Capnocytophaga sp. oral
           taxon 338 str. F0234]
          Length = 363

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 63/260 (24%), Positives = 92/260 (35%), Gaps = 47/260 (18%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+T ++  GQ      L    E A A       +LF GP G+GKTT A+++A+++
Sbjct: 8   ARKYRPQTFKDVVGQQAITDTL----ENAIANDHLAQALLFTGPRGVGKTTCARILAKKI 63

Query: 79  G--------------VNFRSTSGPVIAKAGDLAALLT------NLEDRDVLFIDEIHRLS 118
                           N              + +L+        +    V  IDE+H LS
Sbjct: 64  NEKTTSTQEEDNDFAFNIFELDAASNNSVEGIRSLIEQVRIPPQVGKYKVYIIDEVHMLS 123

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
                     +E+          P A ++ I         ATT    +   +  R  I  
Sbjct: 124 NAAFNAFLKTLEE----------PPAHAIFIL--------ATTEKHKVIPTILSRCQIFD 165

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
                 I D +  ++  AK  GL   DEA   IA ++ G  R A  +  RV  F      
Sbjct: 166 FKRI-TINDAREYLKYIAKEQGLNAEDEALQIIAQKADGAMRDALSIFDRVVSFC----G 220

Query: 239 KTITREIADAALLRLAIDKM 258
           KTITR+     L  L  D  
Sbjct: 221 KTITRQAVSEILNVLDYDTY 240


>gi|323144867|ref|ZP_08079436.1| DNA polymerase III, subunit gamma and tau [Succinatimonas hippei
           YIT 12066]
 gi|322415392|gb|EFY06157.1| DNA polymerase III, subunit gamma and tau [Succinatimonas hippei
           YIT 12066]
          Length = 372

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 55/257 (21%), Positives = 98/257 (38%), Gaps = 25/257 (9%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           +S  + +  A     RP+T  +  GQ    S L   I+A +         L  G  G+GK
Sbjct: 1   MSEKIGEYQALARKYRPQTFADVVGQDHVLSALCNTIDAKRIHHAY----LLTGTRGIGK 56

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVE 122
           TT+A+++A+ L      TS P +    D    +      DV+ ID     ++     ++E
Sbjct: 57  TTIARIIAKSLECETGITSKPCLQC--DACKAIAAGNYPDVIEIDAASQTKVDDTRQLLE 114

Query: 123 EILYPAMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
              YP +       ++ E             ++++   S    I ATT    +   +  R
Sbjct: 115 NTQYPPLTGRYKIYIIDEVHMLTNNSFNALLKTLEEPPSYVKFILATTDPHKIPTTVLSR 174

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
             +  +L    ++++K  +       G+    EAA  IA  ++G+ R A  L     D A
Sbjct: 175 C-LQFQLKALSVDEIKNRIISILATEGVPCEIEAAQLIARAAKGSMRDALSLC----DQA 229

Query: 234 EVAHAKTITREIADAAL 250
               +  + R+     L
Sbjct: 230 IALGSGALERKSVITML 246


>gi|58331833|ref|NP_001011112.1| replication factor C (activator 1) 5, 36.5kDa [Xenopus (Silurana)
           tropicalis]
 gi|54038730|gb|AAH84510.1| replication factor C (activator 1) 5 [Xenopus (Silurana)
           tropicalis]
 gi|89268121|emb|CAJ83540.1| replication factor C (activator 1) 5, 36.5kDa [Xenopus (Silurana)
           tropicalis]
          Length = 335

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 44/240 (18%), Positives = 78/240 (32%), Gaps = 38/240 (15%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M  E       S+    +   RP+TL++     +  S ++ FI       + L H+LF G
Sbjct: 1   MVSENKGQPGQSRNLPWVEKYRPQTLDDLISHQDILSTIQRFIS-----EDKLPHLLFYG 55

Query: 62  PPGLGKTTLAQVVA------RELGVNFRSTSGPVIAKAGDLAA-LLTNLEDRDVL----- 109
           PPG GKT+     A      RE        +         +   +L+    R +      
Sbjct: 56  PPGTGKTSTILACAKQLYKDREFNSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFK 115

Query: 110 --FIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
              +DE   ++   +  L   +E F       E      +   LS+              
Sbjct: 116 LVILDEADAMTQDAQNALRRVIEKF------TENTRFCLICNYLSKIIP----------- 158

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             LQ R     R      E +   ++   K   + ++ +    +   S G  R +  +L+
Sbjct: 159 -ALQSRC-TRFRFGPLSPEMMVPRLEHVVKEECVDISPDGMKALVTLSNGDMRRSLNILQ 216


>gi|313124288|ref|YP_004034547.1| DNA polymerase iii, gamma/tau subunit [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
 gi|312280851|gb|ADQ61570.1| DNA polymerase III, gamma/tau subunit [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
          Length = 607

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 59/326 (18%), Positives = 105/326 (32%), Gaps = 31/326 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPRT ++  GQ      LK     +  R +     LF GP G GKT+ A++ A+ L    
Sbjct: 11  RPRTFDDVVGQEAITDTLK----NSLIRGKVSHAFLFAGPRGTGKTSCAKIFAKALNCLN 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP-----AMEDFQLDLM 137
                P    +  LAA    +   D++ +D     S+     L         E      +
Sbjct: 67  LQEGEPCNECSNCLAADQGAMP--DIIEMDAASNNSVDEIRDLLDKVHYAPTEGKYKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++   +    I ATT +  +   +  R        F   E +
Sbjct: 125 IDEVHMLSISAFNALLKTLEEPPASVVFILATTELQKVPATIISRTQRYNFKRF-SNEAM 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              ++      G+   D+A   IA  + G  R A  +L ++  F         +    + 
Sbjct: 184 VQRMEYILGQEGVEYEDKALKVIAQVADGGMRDALSILDQLLSF-------EKSSVRYED 236

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL           +   + L  +        + +   +         I + I    +Q  
Sbjct: 237 ALEVTGF---AAQEQVEKLLLALLNGDSQTALDLAKSAIQDGASAQNILNEIISLTVQAM 293

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIPHR 334
              +T +G  L     Q +    P R
Sbjct: 294 LFTKTGQGEFLTDDFAQEIAQQSPDR 319


>gi|168211579|ref|ZP_02637204.1| ATP-dependent protease [Clostridium perfringens B str. ATCC 3626]
 gi|168214821|ref|ZP_02640446.1| ATP-dependent protease [Clostridium perfringens CPE str. F4969]
 gi|168218029|ref|ZP_02643654.1| ATP-dependent protease [Clostridium perfringens NCTC 8239]
 gi|182626424|ref|ZP_02954177.1| ATP-dependent protease [Clostridium perfringens D str. JGS1721]
 gi|170710443|gb|EDT22625.1| ATP-dependent protease [Clostridium perfringens B str. ATCC 3626]
 gi|170713714|gb|EDT25896.1| ATP-dependent protease [Clostridium perfringens CPE str. F4969]
 gi|177908298|gb|EDT70851.1| ATP-dependent protease [Clostridium perfringens D str. JGS1721]
 gi|182379942|gb|EDT77421.1| ATP-dependent protease [Clostridium perfringens NCTC 8239]
          Length = 632

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 60/291 (20%), Positives = 101/291 (34%), Gaps = 57/291 (19%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +SLLRP + +E  GQ  A  +L      +K  +    H++  GPPG+GKTT A++     
Sbjct: 163 MSLLRPDSFDEVVGQERAVKSL-----LSKLASPYPQHIILYGPPGVGKTTAARIALETA 217

Query: 79  G----------------------VNFRSTSGPVIAKA---------GDLAAL-------- 99
                                   + R  + P++             DLA +        
Sbjct: 218 KKLKSTPFDDRSKFIEVNGTTLRWDPREITNPLLGSVHDPIYQGSKRDLAEIGVPEPKPG 277

Query: 100 -LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV------GEGPSARSVKIN-- 150
            +T      +LFIDEI  L  I++  L   +ED +++          E        +   
Sbjct: 278 LVTEAHGG-ILFIDEIGELDEILQNKLLKVLEDKRVEFSSSYYDPDDENTPKYIKYLFDK 336

Query: 151 --LSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAA 208
              + F LI ATTR     NP        +        D++ IV   AK   + + +   
Sbjct: 337 GAPADFVLIGATTREPGEINPALRSRCTEVYFEPLSSRDIEKIVLNAAKKLNVKLEEGLE 396

Query: 209 CEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259
            +IA  +    R A  +L      A       +  ++   +     +  +G
Sbjct: 397 KKIASYT-IEGRRAVNILADAYGHAIYGLEGEVPEDLEITSKDLNEVVSIG 446


>gi|87161398|ref|YP_493164.1| DNA polymerase III, gamma and tau subunits [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|88194233|ref|YP_499025.1| DNA polymerase III subunits gamma and tau [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|161508723|ref|YP_001574382.1| DNA-directed DNA polymerase III gamma and tau subunits
           [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|87127372|gb|ABD21886.1| DNA polymerase III, gamma and tau subunits [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|87201791|gb|ABD29601.1| DNA polymerase III, gamma and tau subunits, putative
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|160367532|gb|ABX28503.1| DNA-directed DNA polymerase III gamma and tau subunits
           [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|320139233|gb|EFW31112.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320142047|gb|EFW33872.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
           subsp. aureus MRSA177]
          Length = 557

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 51/258 (19%), Positives = 91/258 (35%), Gaps = 29/258 (11%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           + RP++ E+  GQ      L+  I   K         +F GP G GKT++A+V A+ +  
Sbjct: 1   MYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAY----IFSGPRGTGKTSIAKVFAKAINC 56

Query: 81  NFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLD 135
              +   P       +   +T   + DV+ ID      +  +  I +++ Y   E     
Sbjct: 57  LNSTDGEPCNEC--HICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKV 114

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             ++++   +    I ATT    +   +  R           ++
Sbjct: 115 YIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISR-AQRFDFKAISLD 173

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
            +   ++  A    +   DEA   IA  S G  R A  ++    D A      T+T    
Sbjct: 174 QIVERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIM----DQAIAFGDGTLTL--- 226

Query: 247 DAALLRLA-IDKMGFDQL 263
             AL     +     D L
Sbjct: 227 QDALNVTGSVHDEALDHL 244


>gi|323438495|gb|EGA96246.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus
           O11]
          Length = 557

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 51/258 (19%), Positives = 91/258 (35%), Gaps = 29/258 (11%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           + RP++ E+  GQ      L+  I   K         +F GP G GKT++A+V A+ +  
Sbjct: 1   MYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAY----IFSGPRGTGKTSIAKVFAKAINC 56

Query: 81  NFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLD 135
              +   P       +   +T   + DV+ ID      +  +  I +++ Y   E     
Sbjct: 57  LNSTDGEPCNEC--HICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKV 114

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             ++++   +    I ATT    +   +  R           ++
Sbjct: 115 YIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISR-AQRFDFKAISLD 173

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
            +   ++  A    +   DEA   IA  S G  R A  ++    D A      T+T    
Sbjct: 174 QIVERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIM----DQAIAFGDGTLTL--- 226

Query: 247 DAALLRLA-IDKMGFDQL 263
             AL     +     D L
Sbjct: 227 QDALNVTGSVHDEALDHL 244


>gi|170758370|ref|YP_001788963.1| ATP-dependent protease [Clostridium botulinum A3 str. Loch Maree]
 gi|169405359|gb|ACA53770.1| ATP-dependent protease [Clostridium botulinum A3 str. Loch Maree]
          Length = 639

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 57/281 (20%), Positives = 96/281 (34%), Gaps = 57/281 (20%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG- 79
           LLRP +  E  GQ     +L      +K  +    H++  GPPG+GKT+ A++   E+  
Sbjct: 172 LLRPASFSEIIGQERPIKSL-----LSKIASPYPQHIILYGPPGVGKTSAARLALEEVKK 226

Query: 80  ---------------------VNFRSTSGPVIAKA---------GDLAA---------LL 100
                                 + R  + P++             DLA          L+
Sbjct: 227 LKYTPFYKDSKFVEVDGTTLRWDPREITNPLLGSVHDPIYQGSKRDLAETGIPEPKLGLV 286

Query: 101 TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV------GEGPSARSVKIN---- 150
           T      VLFIDEI  L  +++  L   +ED +++          E        +     
Sbjct: 287 TEAHGG-VLFIDEIGELDDMLQNKLLKVLEDKRVEFSSSYYDPDDENTPKYIKHLFENGA 345

Query: 151 LSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACE 210
            + F LI ATTR     NP        +       +D++ IV   A    + + D    +
Sbjct: 346 PADFVLIGATTREPSEINPALRSRCAEVFFEPLSSKDIEKIVINAADKLDIILED-GVAQ 404

Query: 211 IAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
              R     R A  +L  V  ++   + +       +  + 
Sbjct: 405 TISRYTIEGRKAVNILSDVYGYSLYKNKEYKEGTKLNITMD 445


>gi|152976886|ref|YP_001376403.1| sporulation protease LonB [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|152025638|gb|ABS23408.1| Sporulation protease LonB [Bacillus cytotoxicus NVH 391-98]
          Length = 556

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 54/273 (19%), Positives = 97/273 (35%), Gaps = 56/273 (20%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           R +S  +     +RP +  +  GQ +   +LK     A        HV+  GPPG+GKT 
Sbjct: 51  REISLTEPLAEKVRPTSFSDIVGQEDGIRSLK-----AALCGPNPQHVIIYGPPGVGKTA 105

Query: 70  LAQVV---ARELGVNFRSTSGPVIA---------------------------KAGDL--- 96
            A++V   A++   +    S   I                             AG +   
Sbjct: 106 AARLVLEEAKKNQKSPFRKSAAFIELDATTARFDERGIADPLIGSVHDPIYQGAGAMGQA 165

Query: 97  ------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL----MVGEGPSARS 146
                    +T+     +LFIDEI  L  I    +   +ED ++ L       E     +
Sbjct: 166 GIPQPKKGAVTDAHGG-ILFIDEIGELHPIQMNKMLKVLEDRKVFLESAYYSEENTLIPT 224

Query: 147 VKINL------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
              ++      + F L+ ATTR      P      + +     + E+++ + +  A+   
Sbjct: 225 YIHDIFQKGLPADFRLVGATTRSPEELPPAIRSRCLEVFFRELDTEEVQKVAKNAAEKIE 284

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
           + + ++    I M +R   R A  L++     A
Sbjct: 285 MEIDEQGIEMIGMYARN-GREAINLVQISAGMA 316


>gi|281411913|ref|YP_003345992.1| DNA polymerase III, subunits gamma and tau [Thermotoga naphthophila
           RKU-10]
 gi|281373016|gb|ADA66578.1| DNA polymerase III, subunits gamma and tau [Thermotoga naphthophila
           RKU-10]
          Length = 478

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 56/265 (21%), Positives = 88/265 (33%), Gaps = 57/265 (21%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +      RP+T  E   Q       K  I  A  +       +F GP G GKTTLA+++A
Sbjct: 2   EVLYRKYRPKTFSEVVNQDHV----KKAIIGAIQKNSVAHGYIFAGPRGTGKTTLARILA 57

Query: 76  RELGVNFR------------------------STSGPVIAKAGDLAALLTNLEDRD---- 107
           + L    R                                   ++  +   +  R     
Sbjct: 58  KSLNCENRKGVEPCNSCRACREIDEGTFMDVIELDAASNRGIDEIRRIRDAVGYRPMEGK 117

Query: 108 --VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
             V  IDE+H L+      L   +E+                    S    + ATT +  
Sbjct: 118 YKVYIIDEVHMLTKEAFNALLKTLEE------------------PPSHVVFVLATTNLEK 159

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           +   +  R  +    N  + E ++  +Q  A+  G+ +  EA   IA R+ G  R A  +
Sbjct: 160 VPPTIISRCQVFEFRNIPD-ELIEKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTM 218

Query: 226 LRRVRDFAEVAHAKTITREIADAAL 250
           L +V  F+E      I  E    AL
Sbjct: 219 LEQVWKFSE----GKIDLETVHRAL 239


>gi|148269390|ref|YP_001243850.1| DNA polymerase III, subunits gamma and tau [Thermotoga petrophila
           RKU-1]
 gi|147734934|gb|ABQ46274.1| DNA polymerase III, subunits gamma and tau [Thermotoga petrophila
           RKU-1]
          Length = 478

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 56/265 (21%), Positives = 88/265 (33%), Gaps = 57/265 (21%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +      RP+T  E   Q       K  I  A  +       +F GP G GKTTLA+++A
Sbjct: 2   EVLYRKYRPKTFSEVVNQDHV----KKAIIGAIQKNSVAHGYIFAGPRGTGKTTLARILA 57

Query: 76  RELGVNFR------------------------STSGPVIAKAGDLAALLTNLEDRD---- 107
           + L    R                                   ++  +   +  R     
Sbjct: 58  KSLNCENRKGVEPCNSCRACREIDEGTFMDVIELDAASNRGIDEIRRIRDAVGYRPMEGK 117

Query: 108 --VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
             V  IDE+H L+      L   +E+                    S    + ATT +  
Sbjct: 118 YKVYIIDEVHMLTKEAFNALLKTLEE------------------PPSHVVFVLATTNLEK 159

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           +   +  R  +    N  + E ++  +Q  A+  G+ +  EA   IA R+ G  R A  +
Sbjct: 160 VPPTIISRCQVFEFRNIPD-ELIEKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTM 218

Query: 226 LRRVRDFAEVAHAKTITREIADAAL 250
           L +V  F+E      I  E    AL
Sbjct: 219 LEQVWKFSE----GKIDLETVHRAL 239


>gi|150403344|ref|YP_001330638.1| replication factor C small subunit [Methanococcus maripaludis C7]
 gi|166225156|sp|A6VJ61|RFCS_METM7 RecName: Full=Replication factor C small subunit; Short=RFC small
           subunit; AltName: Full=Clamp loader small subunit
 gi|150034374|gb|ABR66487.1| Replication factor C [Methanococcus maripaludis C7]
          Length = 315

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 60/283 (21%), Positives = 102/283 (36%), Gaps = 43/283 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+TL E  G  E    L  ++E      +++ H+LF G PG+GKTT A  +A+
Sbjct: 4   PWVEKYRPQTLSEVVGHHEIIKRLTNYVE-----KKSMPHLLFSGSPGVGKTTAALALAK 58

Query: 77  ------------ELGVNFRSTSGPVIAKAGDLAALLT-NLEDRDVLFIDEIHRLSIIVEE 123
                       EL  +       +  K  D A           V+F+DE   L+   + 
Sbjct: 59  DLYGETWRENFLELNSSDERGIDVIRTKVKDFARTKPIGDAPFKVIFLDESDALTSDAQN 118

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
            L   ME +                 ++ RF L  +      +  P+Q R  I  R +  
Sbjct: 119 ALRRTMEKYS----------------DICRFVL--SCNYPSKIIPPIQSRCAI-FRFSPL 159

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE------VAH 237
           + EDL   ++  ++   L +       I   S G  R A  +L+     ++      V  
Sbjct: 160 KTEDLVENLKEISEKENLTLEKGGIDAIIYVSEGDMRKAINVLQTAAAVSDTVTEEIVYK 219

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV 280
             +  R      + +LA++    +  +  Y  MI     G  +
Sbjct: 220 VASKARPDEIKKMTQLALNGKFVESREQLYNLMIDWGMSGEDI 262


>gi|15643449|ref|NP_228495.1| DNA polymerase III, gamma and tau subunit [Thermotoga maritima
           MSB8]
 gi|4981209|gb|AAD35768.1|AE001741_1 DNA polymerase III, gamma and tau subunit [Thermotoga maritima
           MSB8]
          Length = 478

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 56/265 (21%), Positives = 88/265 (33%), Gaps = 57/265 (21%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +      RP+T  E   Q       K  I  A  +       +F GP G GKTTLA+++A
Sbjct: 2   EVLYRKYRPKTFSEVVNQDHV----KKAIIGAIQKNSVAHGYIFAGPRGTGKTTLARILA 57

Query: 76  RELGVNFR------------------------STSGPVIAKAGDLAALLTNLEDRD---- 107
           + L    R                                   ++  +   +  R     
Sbjct: 58  KSLNCENRKGVEPCNSCRACREIDEGTFMDVIELDAASNRGIDEIRRIRDAVGYRPMEGK 117

Query: 108 --VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
             V  IDE+H L+      L   +E+                    S    + ATT +  
Sbjct: 118 YKVYIIDEVHMLTKEAFNALLKTLEE------------------PPSHVVFVLATTNLEK 159

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           +   +  R  +    N  + E ++  +Q  A+  G+ +  EA   IA R+ G  R A  +
Sbjct: 160 VPPTIISRCQVFEFRNIPD-ELIEKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTM 218

Query: 226 LRRVRDFAEVAHAKTITREIADAAL 250
           L +V  F+E      I  E    AL
Sbjct: 219 LEQVWKFSE----GKIDLETVHRAL 239


>gi|121534993|ref|ZP_01666811.1| peptidase S16, lon domain protein [Thermosinus carboxydivorans
           Nor1]
 gi|121306406|gb|EAX47330.1| peptidase S16, lon domain protein [Thermosinus carboxydivorans
           Nor1]
          Length = 644

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 54/236 (22%), Positives = 84/236 (35%), Gaps = 56/236 (23%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           + L+RP +L E  GQ  A   L+     AK  +    H++  GPPG+GKTT A++V  E 
Sbjct: 169 MELVRPASLAEIVGQERAIEALR-----AKLASPYPQHLIIYGPPGVGKTTAARLVLEEA 223

Query: 79  G----------------------VNFRSTSGPVIAKA---------GDLAA--------- 98
                                   + R  + P++             DLA          
Sbjct: 224 KKLKFTPFAADAPFIEVDGTTLRWDPRDMTNPLLGSVHDPIYQGARKDLAETGIPEPKPG 283

Query: 99  LLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL----DLMVGEGPSARSVKINL--- 151
           L+T+     +LFIDEI  +  +++  L   +ED ++           P        L   
Sbjct: 284 LVTDAHGG-ILFIDEIGEMDPMLQNKLLKVLEDKRVFFDSAYYDPSDPHVPKYVKKLFAD 342

Query: 152 ---SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVT 204
              + F LI ATTR     NP        I       + ++ IV   A+     + 
Sbjct: 343 GAPADFILIGATTRDPGDINPAIRSRCAEIFFEPLTPKHIEEIVYNAARRLKADMD 398


>gi|293379950|ref|ZP_06626051.1| DNA polymerase III, subunit gamma and tau [Lactobacillus crispatus
           214-1]
 gi|290923463|gb|EFE00365.1| DNA polymerase III, subunit gamma and tau [Lactobacillus crispatus
           214-1]
          Length = 601

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 59/306 (19%), Positives = 101/306 (33%), Gaps = 33/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPRT +   GQ      LK  I     R +     LF GP G GKT+ A++ A+ L    
Sbjct: 11  RPRTFDSVIGQEAITDTLKNAI----KRGKVSHAFLFAGPRGTGKTSCAKIFAKALNCTN 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P    A  +AA   ++   D++ ID      +  +  I +++ Y   E      +
Sbjct: 67  LQDGEPCNECANCIAADQGSMP--DIMEIDAASNNGVDEIREIRDKVKYAPTEGKYKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT +  +   +  R            EDL
Sbjct: 125 IDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRI-SKEDL 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +   D+A   IA  + G  R A  +L ++  +              D 
Sbjct: 184 EKRMKYILDQENIKYEDKALAVIAQVADGGMRDALSILDQLLSY-------EKESVNYDD 236

Query: 249 ALLRLAI-DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           AL      D+   +    + L  +     G  +               I D I     + 
Sbjct: 237 ALQITGFADRENIE----KILLALLNQDAGQALQFTQDELAKGASSKNILDEIIDLTTKS 292

Query: 308 GFIQRT 313
             I +T
Sbjct: 293 LLIVKT 298


>gi|169337985|ref|ZP_02620753.2| ATP-dependent protease LonB [Clostridium botulinum C str. Eklund]
 gi|169296007|gb|EDS78140.1| ATP-dependent protease LonB [Clostridium botulinum C str. Eklund]
          Length = 548

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 64/314 (20%), Positives = 107/314 (34%), Gaps = 69/314 (21%)

Query: 7   LLSRNVSQEDADISLL-------------RPRTLEEFTGQVEACSNLKVFIEAAKARAEA 53
           ++S+   +E   +  +             RP++ +E  GQ +        +EAA      
Sbjct: 18  IISKENRKEVEKLKKMKQIKLTEPLTEKSRPKSFKEIIGQEK----GIRALEAAIC-GPN 72

Query: 54  LDHVLFVGPPGLGKTTLAQVV----------------------ARELGVNFRSTSGPVIA 91
             HV+  GPPG+GKT  A++V                      A  +  + R  + P+I 
Sbjct: 73  PQHVIIYGPPGVGKTAAARIVLENAKKKEFSPFTEESKFVEIDATTVRFDDRGIADPLIG 132

Query: 92  KAGD-----------------LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
              D                     +T      +LFIDEI  L  +    L   MED ++
Sbjct: 133 SVHDPIYQGAGALGTAGIPQPKPGAVTKAHGG-ILFIDEIGELHPVETNKLLKVMEDRKV 191

Query: 135 DL----MVGEGPSARSVKINL------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
            L       E P+  +   ++      + F L+ ATTR      P      + I      
Sbjct: 192 FLESAYYNSEDPNVPTHIKDIFDNGLPADFRLVGATTRSPDEMCPAIRSRCVEIFFRSLN 251

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            E+++ I +   K  G  + D+ A E+  +     R A  L++     A     K I  E
Sbjct: 252 AEEIEKIAEDAVKKIGFTIEDK-AKELVGKYSNNGRDAVSLIQLSSGIALNEGRKNIQVE 310

Query: 245 IADAALLRLAIDKM 258
             +  +      K 
Sbjct: 311 DMEWIIENGQYSKR 324


>gi|323441335|gb|EGA98998.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus
           O46]
          Length = 557

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 51/258 (19%), Positives = 91/258 (35%), Gaps = 29/258 (11%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           + RP++ E+  GQ      L+  I   K         +F GP G GKT++A+V A+ +  
Sbjct: 1   MYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAY----IFSGPRGTGKTSIAKVFAKAINC 56

Query: 81  NFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLD 135
              +   P       +   +T   + DV+ ID      +  +  I +++ Y   E     
Sbjct: 57  LNSTDGEPCNEC--HICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKV 114

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             ++++   +    I ATT    +   +  R           ++
Sbjct: 115 YIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISR-AQRFDFKAISLD 173

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
            +   ++  A    +   DEA   IA  S G  R A  ++    D A      T+T    
Sbjct: 174 QIVERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIM----DQAIAFGDGTLTL--- 226

Query: 247 DAALLRLA-IDKMGFDQL 263
             AL     +     D L
Sbjct: 227 QDALNVTGSVHDEALDHL 244


>gi|253730826|ref|ZP_04864991.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus
           subsp. aureus USA300_TCH959]
 gi|253735210|ref|ZP_04869375.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus
           subsp. aureus TCH130]
 gi|253725438|gb|EES94167.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus
           subsp. aureus USA300_TCH959]
 gi|253726874|gb|EES95603.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus
           subsp. aureus TCH130]
          Length = 557

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 51/258 (19%), Positives = 91/258 (35%), Gaps = 29/258 (11%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           + RP++ E+  GQ      L+  I   K         +F GP G GKT++A+V A+ +  
Sbjct: 1   MYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAY----IFSGPRGTGKTSIAKVFAKAINC 56

Query: 81  NFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLD 135
              +   P       +   +T   + DV+ ID      +  +  I +++ Y   E     
Sbjct: 57  LNSTDGEPCNEC--HICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKV 114

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             ++++   +    I ATT    +   +  R           ++
Sbjct: 115 YIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISR-AQRFDFKAISLD 173

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
            +   ++  A    +   DEA   IA  S G  R A  ++    D A      T+T    
Sbjct: 174 QIVERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIM----DQAIAFGDGTLTL--- 226

Query: 247 DAALLRLA-IDKMGFDQL 263
             AL     +     D L
Sbjct: 227 QDALNVTGSVHDEALDHL 244


>gi|14520329|ref|NP_125804.1| replication factor C large subunit [Pyrococcus abyssi GE5]
 gi|42559542|sp|Q9V2G3|RFCL_PYRAB RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit;
           AltName: Full=PabRFC large subunit
 gi|5457544|emb|CAB49035.1| rfcL activator 1, replication factor C, large subunit [Pyrococcus
           abyssi GE5]
          Length = 479

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 81/225 (36%), Gaps = 29/225 (12%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH-VLFVGPPGLGKTTLAQ 72
            E   +   RPR L E   Q +A S +K +IEA           +L  GPPG GKTT   
Sbjct: 2   PEVPWVEKYRPRRLSEIINQEDAISKVKAWIEAWLHGNPPKKKALLLAGPPGSGKTTTVY 61

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEIL 125
            +ARE        +         +A  +          + R ++F+DE   +        
Sbjct: 62  ALAREYNFEVIELNASDERTYDKIARYVQAAYTMDILGKRRKIIFLDEADNIEPS----- 116

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
                          G    +  I+ +R  +I A      +   ++DR  +       + 
Sbjct: 117 ---------------GAPEIAKLIDRARNPIIMAANHYWEVPKEIRDRAELVEYKRLTQR 161

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
           + +  +V R  K  G+ V  E   EIA R+ G  R A   L+ V 
Sbjct: 162 DVINALV-RILKREGITVPKEVLVEIAKRASGDLRAAINDLQTVV 205


>gi|227877637|ref|ZP_03995690.1| possible DNA-directed DNA polymerase [Lactobacillus crispatus
           JV-V01]
 gi|256849090|ref|ZP_05554523.1| DNA polymerase III [Lactobacillus crispatus MV-1A-US]
 gi|262047572|ref|ZP_06020527.1| DNA polymerase III, gamma/tau subunits [Lactobacillus crispatus
           MV-3A-US]
 gi|312977922|ref|ZP_07789668.1| DNA polymerase III [Lactobacillus crispatus CTV-05]
 gi|227862785|gb|EEJ70251.1| possible DNA-directed DNA polymerase [Lactobacillus crispatus
           JV-V01]
 gi|256713866|gb|EEU28854.1| DNA polymerase III [Lactobacillus crispatus MV-1A-US]
 gi|260572148|gb|EEX28713.1| DNA polymerase III, gamma/tau subunits [Lactobacillus crispatus
           MV-3A-US]
 gi|310895229|gb|EFQ44297.1| DNA polymerase III [Lactobacillus crispatus CTV-05]
          Length = 601

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 59/306 (19%), Positives = 101/306 (33%), Gaps = 33/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPRT +   GQ      LK  I     R +     LF GP G GKT+ A++ A+ L    
Sbjct: 11  RPRTFDSVIGQEAITDTLKNAI----KRGKVSHAFLFAGPRGTGKTSCAKIFAKALNCTN 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P    A  +AA   ++   D++ ID      +  +  I +++ Y   E      +
Sbjct: 67  LQDGEPCNECANCIAADQGSMP--DIMEIDAASNNGVDEIREIRDKVKYAPTEGKYKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT +  +   +  R            EDL
Sbjct: 125 IDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRI-SKEDL 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +   D+A   IA  + G  R A  +L ++  +              D 
Sbjct: 184 EKRMKYILDQENIKYEDKALAVIAQVADGGMRDALSILDQLLSY-------EKESVNYDD 236

Query: 249 ALLRLAI-DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           AL      D+   +    + L  +     G  +               I D I     + 
Sbjct: 237 ALQITGFADRENIE----KILLALLNQDAGQALQFTQDELAKGASSKNILDEIIDLTTKS 292

Query: 308 GFIQRT 313
             I +T
Sbjct: 293 LLIVKT 298


>gi|325268871|ref|ZP_08135496.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella multiformis
           DSM 16608]
 gi|324988843|gb|EGC20801.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella multiformis
           DSM 16608]
          Length = 601

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/254 (16%), Positives = 93/254 (36%), Gaps = 24/254 (9%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP + +   GQ    + LK  +++ K         LF GP G+GKTT A++ A+ +
Sbjct: 8   ARKYRPMSFDSVVGQQALTTTLKNAVKSGKLAHAY----LFCGPRGVGKTTCARIFAKAI 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI------IVEEILYPAMEDF 132
                +  G    +     A  +     ++  +D     S+      + +  + P +  +
Sbjct: 64  NCEHPTADGEACNECESCKA-FSEGRSYNIFELDAASNNSVENIKSLMDQTRIPPQVGRY 122

Query: 133 QLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           ++ ++               ++++   +    I ATT    +   +  R  I        
Sbjct: 123 KVFIIDEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQIYDFERM-T 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           + ++ + ++  A+   +   +EA   IA ++ G  R A  +  +   F++      IT +
Sbjct: 182 VPNIISHLKSVAEKENIQYEEEALNVIAEKADGGMRDALSIFDQTASFSQ----GNITYQ 237

Query: 245 IADAALLRLAIDKM 258
                L  L  D  
Sbjct: 238 KVIEDLNVLDADNY 251


>gi|21227923|ref|NP_633845.1| replication factor C small subunit [Methanosarcina mazei Go1]
 gi|42559488|sp|Q8PVY4|RFCS_METMA RecName: Full=Replication factor C small subunit; Short=RFC small
           subunit; AltName: Full=Clamp loader small subunit
 gi|20906344|gb|AAM31517.1| replication factor C subunit [Methanosarcina mazei Go1]
          Length = 338

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 80/231 (34%), Gaps = 38/231 (16%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           +E+  I   RP  L +  GQ E    L      +    + L H+LF GPPG+GKT  A  
Sbjct: 11  KEEIWIEKYRPVRLNQVAGQEETIERL-----MSYVATKNLPHLLFSGPPGVGKTASAVS 65

Query: 74  VARE------LGVNFRSTSGPVIAKAGDLAALLTNLED--------RDVLFIDEIHRLSI 119
           +ARE         NF   +         +   + N             ++F+DE   L+ 
Sbjct: 66  IAREIFGEDLWRENFTELNASDERGIDIVRNKIKNFAKTAPMGGAPFKIIFLDEADALTS 125

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
             +  L   ME F                   S    I +      +  P+Q R  +   
Sbjct: 126 DAQSALRRTMEKFS------------------SNCRFILSCNYSSKIIEPIQSRCAVYRF 167

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
                 + ++  ++  AK   L++TD     +   ++G  R A   L+   
Sbjct: 168 RRL-SDKAIRERLEYIAKEQDLSITDGGYEALIYVAQGDMRKAVNSLQAAA 217


>gi|170288047|ref|YP_001738285.1| DNA polymerase III, subunits gamma and tau [Thermotoga sp. RQ2]
 gi|170175550|gb|ACB08602.1| DNA polymerase III, subunits gamma and tau [Thermotoga sp. RQ2]
          Length = 478

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 56/265 (21%), Positives = 88/265 (33%), Gaps = 57/265 (21%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +      RP+T  E   Q       K  I  A  +       +F GP G GKTTLA+++A
Sbjct: 2   EVLYRKYRPKTFSEVVDQDHV----KKAIIGAIQKNSVAHGYIFAGPRGTGKTTLARILA 57

Query: 76  RELGVNFR------------------------STSGPVIAKAGDLAALLTNLEDRD---- 107
           + L    R                                   ++  +   +  R     
Sbjct: 58  KSLNCENRKGVEPCNSCRACREIDEGTFMDVIELDAASNRGIDEIRRIRDAVGYRPMEGK 117

Query: 108 --VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
             V  IDE+H L+      L   +E+                    S    + ATT +  
Sbjct: 118 YKVYIIDEVHMLTKEAFNALLKTLEE------------------PPSHVVFVLATTNLEK 159

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           +   +  R  +    N  + E ++  +Q  A+  G+ +  EA   IA R+ G  R A  +
Sbjct: 160 VPPTIISRCQVFEFRNIPD-ELIEKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTM 218

Query: 226 LRRVRDFAEVAHAKTITREIADAAL 250
           L +V  F+E      I  E    AL
Sbjct: 219 LEQVWKFSE----GKIDLETVHRAL 239


>gi|149234968|ref|XP_001523363.1| activator 1 41 kDa subunit [Lodderomyces elongisporus NRRL YB-4239]
 gi|146453152|gb|EDK47408.1| activator 1 41 kDa subunit [Lodderomyces elongisporus NRRL YB-4239]
          Length = 402

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 44/265 (16%), Positives = 86/265 (32%), Gaps = 50/265 (18%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+ L++   Q  A   LK  I         L H+LF GPPG GKT+    +A+
Sbjct: 36  PWVEKYRPKNLDDVASQDHAVKVLKKQISTG-----NLPHMLFYGPPGTGKTSTILALAK 90

Query: 77  E------LGVNFRSTSGPVIAKAGDLAALLTNLEDRD------------------VLFID 112
           +              +         +   + N                       ++ +D
Sbjct: 91  QLYGPNLYKSRVLELNASDERGISIVRQKIKNFAKLTVSNPTEDDLRNYPCPPYKIIILD 150

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E   ++   +  L   ME +                 N++RF L+     +  + +PL  
Sbjct: 151 EADSMTNDAQSALRRTMETY----------------ANITRFALVC--NYITRIIDPLAS 192

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R     R      E+    ++  AK   L + ++ A           RI+   +R+   +
Sbjct: 193 RCS-KFRFKLLNNENSLNRLKYIAKEENLHLDEKGA--PDEVLNEVLRISNGDMRKAITY 249

Query: 233 AEVAHAKTITREIADAALLRLAIDK 257
            + A   + + ++ +        +K
Sbjct: 250 LQSASKLSSSLQLENCKNDMNEDNK 274


>gi|75764377|ref|ZP_00743894.1| ATP-dependent endopeptidase Lon [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74488136|gb|EAO51835.1| ATP-dependent endopeptidase Lon [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 512

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 56/289 (19%), Positives = 100/289 (34%), Gaps = 57/289 (19%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           R +S  +     +RP T  +  GQ +   +LK     A        HV+  GPPG+GKT 
Sbjct: 51  REISLTEPLAEKVRPTTFLDIVGQEDGIKSLK-----AALCGPNPQHVIIYGPPGVGKTA 105

Query: 70  LAQVVARELGVNFRSTS----------------------GPVIAKAGD------------ 95
            A++V  E   N +S                         P+I    D            
Sbjct: 106 AARLVLEEAKRNPKSPFRTNATFIELDATTARFDERGIADPLIGSVHDPIYQGAGAMGQA 165

Query: 96  -----LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL----MVGEGPSARS 146
                    +T+     +LFIDEI  L  I    +   +ED ++ L       E     +
Sbjct: 166 GIPQPKKGAVTDAHGG-ILFIDEIGELHPIQMNKMLKVLEDRKVFLESAYYSEENTMIPT 224

Query: 147 VKINL------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
              ++      + F L+ ATTR      P      + +     + E+++ + +  A+   
Sbjct: 225 YIHDIFQKGLPADFRLVGATTRSPEEIPPAIRSRCLEVFFRELDTEEIQKVAKNAAEKVE 284

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
           + + +     I M +R   R A  L++     A +   ++  ++     
Sbjct: 285 MQIGENGIEMIGMYARN-GREAINLVQISAGMA-INEERSFIKDEDIEW 331


>gi|269202097|ref|YP_003281366.1| DNA polymerase III, gamma and tau subunits [Staphylococcus aureus
           subsp. aureus ED98]
 gi|262074387|gb|ACY10360.1| DNA polymerase III, gamma and tau subunits [Staphylococcus aureus
           subsp. aureus ED98]
          Length = 565

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 51/262 (19%), Positives = 92/262 (35%), Gaps = 29/262 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RP++ E+  GQ      L+  I   K         +F GP G GKT++A++ A+
Sbjct: 5   ALYRMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAY----IFSGPRGTGKTSIAKMFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +     +   P       +   +T   + DV+ ID      +  +  I +++ Y   E 
Sbjct: 61  AINCLNSTDGEPCNEC--HICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSES 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++   +    I ATT    +   +  R         
Sbjct: 119 KYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISR-AQRFDFKA 177

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
             ++ +   ++  A    +   DEA   IA  S G  R A  ++    D A      T+T
Sbjct: 178 ISLDQIVERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIM----DQAIAFGDGTLT 233

Query: 243 REIADAALLRLA-IDKMGFDQL 263
                 AL     +     D L
Sbjct: 234 L---QDALNVTGSVHDEALDHL 252


>gi|227538385|ref|ZP_03968434.1| DNA polymerase III, tau and gamma subunits [Sphingobacterium
           spiritivorum ATCC 33300]
 gi|227241767|gb|EEI91782.1| DNA polymerase III, tau and gamma subunits [Sphingobacterium
           spiritivorum ATCC 33300]
          Length = 388

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 76/229 (33%), Gaps = 20/229 (8%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T +   GQ      LK  I   +         LF GP G+GKTT A+++A+ +
Sbjct: 8   ARKYRPVTFDSVVGQQHITGTLKNAIHNNQLAQA----FLFCGPRGVGKTTCARILAKTI 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL-----YPAMEDFQ 133
                ++         D      N     +  +D     S+     L      P      
Sbjct: 64  NCEHITSEVEAC-GVCDSCKSFQNGNSFSIHELDAASNNSVDDIRNLIDQVRIPPQSGKY 122

Query: 134 LDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
              ++ E             ++++   S    I ATT    +   +  R  I    N   
Sbjct: 123 KIYIIDEVHMLSQQAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQI-FDFNRIR 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
           +ED+   +   A+   +    +    IA ++ G  R A  +  ++  F+
Sbjct: 182 VEDMAQHLAGIAEKEAVTYDLDGLHIIAQKADGGLRDALSMFDQIVSFS 230


>gi|255712103|ref|XP_002552334.1| KLTH0C02442p [Lachancea thermotolerans]
 gi|238933713|emb|CAR21896.1| KLTH0C02442p [Lachancea thermotolerans]
          Length = 356

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 50/250 (20%), Positives = 87/250 (34%), Gaps = 50/250 (20%)

Query: 4   REGLLSRNVSQED--ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           R+ L       +D    +   RP+ LE+ T Q  A + LK  +++A      L H+LF G
Sbjct: 10  RQKLSQPENHGDDSKPWVEKYRPKKLEDVTAQDHAVNVLKKTLQSA-----NLPHMLFYG 64

Query: 62  PPGLGKTTLAQVVARE------LGVNFRSTSGPVIAKAGDLAALLTNLEDRD-------- 107
           PPG GKT+    + +E      +       +         +   + +             
Sbjct: 65  PPGTGKTSTILALTKELYGPALMKSRVLELNASDERGIAIVRDKIKSFARLTVSKPSQND 124

Query: 108 ----------VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLI 157
                     ++ +DE   ++   +  L   ME++                 N++RF   
Sbjct: 125 REKYPCPPYKIIILDEADSMTADAQSALRRTMENYS----------------NVTRF--C 166

Query: 158 AATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRG 217
                V  + +PL  R     R    +  +  + VQ  AK   L   +    +I   S+G
Sbjct: 167 LICNYVTRIIDPLASRCS-KFRFKPLDSSNALSRVQYVAKEERLQYDEHVLEKILDVSQG 225

Query: 218 TPRIAGRLLR 227
             R A  LL+
Sbjct: 226 DLRRAIMLLQ 235


>gi|73663587|ref|YP_302368.1| DNA polymerase III gamma and tau subunits [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
 gi|72496102|dbj|BAE19423.1| DNA polymerase III gamma and tau subunits [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 570

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 87/234 (37%), Gaps = 21/234 (8%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RP++ E+  GQ      L+  I   K         +F GP G GKT++A+V A+
Sbjct: 5   ALYRMFRPQSFEDVVGQEHVTKTLRNAISKEKQSHAY----IFSGPRGTGKTSIAKVFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +    RS   P    A  +   +T   + DV+ ID      +  +  I +++ Y   E 
Sbjct: 61  AINCLERSDGEPCNECA--ICKGITRGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSES 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++   +    I ATT    +   +  R         
Sbjct: 119 KFKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISR-AQRFDFKA 177

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
              E++   ++  A+   +   + A   IA  S G  R A  ++ +   F +  
Sbjct: 178 ISQEEIVERLKFVAESQAIEYDEAALNFIAKASEGGMRDALSIMDQAIAFGDEH 231


>gi|314935108|ref|ZP_07842467.1| DNA polymerase III, gamma and tau subunits [Staphylococcus caprae
           C87]
 gi|313653038|gb|EFS16801.1| DNA polymerase III, gamma and tau subunits [Staphylococcus caprae
           C87]
          Length = 568

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 85/234 (36%), Gaps = 21/234 (8%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RP++ ++  GQ      L+  I   K         +F GP G GKT++A+V A+
Sbjct: 5   ALYRMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAY----IFSGPRGTGKTSIAKVFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +         P    A  +   +T   + DV+ ID      +  +  I +++ Y   E 
Sbjct: 61  AINCLNSDDGEPCNECA--ICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSES 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++   S    I ATT    +   +  R         
Sbjct: 119 KYKVYIIDEVHMLTTGAFNALLKTLEEPPSHAIFILATTEPHKIPPTIISR-AQRFDFKA 177

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
             ++ +   ++  A+   L   + A   IA  S G  R A  ++ +   F +  
Sbjct: 178 ISMDQIVDRLKFVAESQSLEYDNAALEFIAKTSEGGMRDALSIMDQAIAFGDER 231


>gi|156849229|ref|XP_001647495.1| hypothetical protein Kpol_1018p177 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156118181|gb|EDO19637.1| hypothetical protein Kpol_1018p177 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 350

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 47/267 (17%), Positives = 86/267 (32%), Gaps = 50/267 (18%)

Query: 8   LSRNVSQED--ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           +S  V  E     +   RP+ L++   Q  A + LK  + +A      L H+LF GPPG 
Sbjct: 12  ISSEVDSEQTQPWVEKYRPKKLDDVAAQEHAVTVLKRTLGSA-----NLPHMLFYGPPGT 66

Query: 66  GKTTLAQVVARE------LGVNFRSTSGPVIAKAGDLAALLTNLEDRD------------ 107
           GKT+    + +E      +       +         +   + N                 
Sbjct: 67  GKTSTILALTKELFGPNLIKSRVLELNASDERGISIVREKVKNFARLTVSKPSKEDLEKY 126

Query: 108 ------VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATT 161
                 ++ +DE   ++   +  L   ME +                 N++RF       
Sbjct: 127 PCPPYKIIILDEADSMTADAQSALRRTMETYS----------------NITRF--CLICN 168

Query: 162 RVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRI 221
            V  + +PL  R     R    +  +    ++  A+   +   +    +I   S G  R 
Sbjct: 169 YVTRIIDPLASRCS-KFRFKALDETNALDRLKFVAQEENVNYKENVLEKILEISSGDLRR 227

Query: 222 AGRLLRRVRDFAEVAHAKTITREIADA 248
           A  LL+     +       IT  + + 
Sbjct: 228 AITLLQSASKTSTYTENSEITVNLVEE 254


>gi|6322528|ref|NP_012602.1| Rfc2p [Saccharomyces cerevisiae S288c]
 gi|730502|sp|P40348|RFC2_YEAST RecName: Full=Replication factor C subunit 2; Short=Replication
           factor C2; AltName: Full=Activator 1 41 kDa subunit
 gi|498463|dbj|BAA05858.1| Rfc2 protein [Saccharomyces cerevisiae]
 gi|841464|gb|AAC49061.1| Rfc2p [Saccharomyces cerevisiae]
 gi|1015747|emb|CAA89596.1| RFC2 [Saccharomyces cerevisiae]
 gi|1019690|gb|AAB39294.1| ORF YJR068w [Saccharomyces cerevisiae]
 gi|285812957|tpg|DAA08855.1| TPA: Rfc2p [Saccharomyces cerevisiae S288c]
          Length = 353

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 44/258 (17%), Positives = 81/258 (31%), Gaps = 48/258 (18%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L +     +   +   RP+ L+E T Q  A + LK  +++A      L H+LF GPPG G
Sbjct: 16  LAAEQSLAQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSA-----NLPHMLFYGPPGTG 70

Query: 67  KTTLAQVVARE------LGVNFRSTSGPVIAKAGDLAALLTNLEDRD------------- 107
           KT+    + +E      +       +         +   + N                  
Sbjct: 71  KTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYP 130

Query: 108 -----VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTR 162
                ++ +DE   ++   +  L   ME +                  ++RF        
Sbjct: 131 CPPYKIIILDEADSMTADAQSALRRTMETYS----------------GVTRF--CLICNY 172

Query: 163 VGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
           V  + +PL  R     R    +  +    ++  ++   +   D     I   S G  R  
Sbjct: 173 VTRIIDPLASRCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRG 231

Query: 223 GRLLRRVRDFAEVAHAKT 240
             LL+     A+      
Sbjct: 232 ITLLQSASKGAQYLGDGK 249


>gi|50287127|ref|XP_445993.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49525300|emb|CAG58917.1| unnamed protein product [Candida glabrata]
          Length = 352

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 46/251 (18%), Positives = 80/251 (31%), Gaps = 22/251 (8%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           +         +   RP+ L++   Q    + LK  + +A      L H+LF GPPG GKT
Sbjct: 18  AAEAEHNKPWVEKYRPKKLDDVAAQDHVVNVLKKTLSSA-----NLPHMLFYGPPGTGKT 72

Query: 69  TLAQVVARE------LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           +    + +E      +       +         +   + N     V            +E
Sbjct: 73  STILALTKELFGPELMKTRVLELNASDERGISIVREKVKNFARLTVS-----KPSKHDLE 127

Query: 123 EILYPAMEDFQLDLMVGEGPSA----RSVKINLSRFTLIAA-TTRVGLLTNPLQDRFGIP 177
             L P  +   LD        A    R      S  T        V  + +PL  R    
Sbjct: 128 NYLCPPYKIIILDEADSMTADAQSALRRTMETYSTVTRFCLICNYVTRIIDPLASRCS-K 186

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            R    +  +    ++  A+  G+ V   +   I   S G  R A  LL+        + 
Sbjct: 187 FRFKSLDSSNALQRLKYVAEEEGVKVKAGSLETILDISAGDLRRAITLLQSASKNIGYSG 246

Query: 238 AKTITREIADA 248
              +++E+ + 
Sbjct: 247 EDEVSKELVEE 257


>gi|223983491|ref|ZP_03633677.1| hypothetical protein HOLDEFILI_00957 [Holdemania filiformis DSM
           12042]
 gi|223964663|gb|EEF68989.1| hypothetical protein HOLDEFILI_00957 [Holdemania filiformis DSM
           12042]
          Length = 613

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 87/228 (38%), Gaps = 26/228 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP + EE  GQ    + LK  ++  K         LF GP G GKTT+A+++A+ +    
Sbjct: 11  RPSSFEEVVGQQHIVTTLKNAVKQNKIAHAY----LFCGPRGTGKTTIAKLLAKAVNCED 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDR--DVLFID-----EIHRLSIIVEEILYPAMEDFQLD 135
           +       A      + L   +    D++ ID      +  +  ++E++ Y  +E     
Sbjct: 67  QQN-----APCNQCRSCLAIQQGNHPDIVEIDAASNNGVDEVRELIEKVKYAPLEGRYKV 121

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             ++++   S    I ATT    +   +  R          + E
Sbjct: 122 YIIDEVHMMSSGAFNALLKTLEEPPSHVIFILATTEPQKVLPTIISRCQRYDFSKVGQNE 181

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
            +   V+   +   +   DEA   +A  + G  R A  ++ +   +A+
Sbjct: 182 IITR-VRCVLEQEHIECEDEALRLVAQLADGGMRDALSIMDQCIAYAQ 228


>gi|169343442|ref|ZP_02864442.1| ATP-dependent protease [Clostridium perfringens C str. JGS1495]
 gi|169298394|gb|EDS80483.1| ATP-dependent protease [Clostridium perfringens C str. JGS1495]
          Length = 632

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 60/291 (20%), Positives = 101/291 (34%), Gaps = 57/291 (19%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +SLLRP + +E  GQ  A  +L      +K  +    H++  GPPG+GKTT A++     
Sbjct: 163 MSLLRPDSFDEVVGQERAVKSL-----LSKLASPYPQHIILYGPPGVGKTTAARIALETA 217

Query: 79  G----------------------VNFRSTSGPVIAKA---------GDLAAL-------- 99
                                   + R  + P++             DLA +        
Sbjct: 218 KKLKSTPFDDRSKFIEVNGTTLRWDPREITNPLLGSVHDPIYQGSKRDLAEIGVPEPKPG 277

Query: 100 -LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV------GEGPSARSVKIN-- 150
            +T      +LFIDEI  L  I++  L   +ED +++          E        +   
Sbjct: 278 LVTEAHGG-ILFIDEIGELDEILQNKLLKVLEDKRVEFSSSYYDPDDENTPKYIKYLFDK 336

Query: 151 --LSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAA 208
              + F LI ATTR     NP        +        D++ IV   AK   + + +   
Sbjct: 337 GAPADFVLIGATTREPGEINPALRSRCTEVYFEPLSSRDIEKIVLNAAKKLNVKLEEGLE 396

Query: 209 CEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259
            +IA  +    R A  +L      A       +  ++   +     +  +G
Sbjct: 397 KKIASYT-IEGRRAVNILADAYGHAIYGLEGDVPEDLEITSKDLNEVVSIG 446


>gi|332158285|ref|YP_004423564.1| replication factor C large subunit [Pyrococcus sp. NA2]
 gi|331033748|gb|AEC51560.1| replication factor C large subunit [Pyrococcus sp. NA2]
          Length = 479

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 80/224 (35%), Gaps = 29/224 (12%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH-VLFVGPPGLGKTTLAQV 73
           E   I   RP+ L E   Q +A   ++ +IEA           +L  GPPG GKTT    
Sbjct: 3   EIPWIEKYRPKRLSEIVNQEDAIEKVRAWIEAWLHGNPPKKKALLLAGPPGSGKTTTVYA 62

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILY 126
           +A E        +         +A  +          + R ++F+DE   +         
Sbjct: 63  LANEYNFEVIELNASDERTYNKIARYVQAAYTMDILGKRRKIIFLDEADNIEPS------ 116

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
                         G +  +  I+ +R  +I A      +   ++DR  +       + +
Sbjct: 117 --------------GAAEIAKLIDKARNPIIMAANHYWEVPKEIRDRAELVEYKRLTQRD 162

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
            +  ++ R  +  G+ V  E   EIA R+ G  R A   L+ V 
Sbjct: 163 VMSALI-RILRREGITVPKEILTEIAKRASGDLRAAINDLQTVV 205


>gi|116514540|ref|YP_813446.1| DNA polymerase III, gamma/tau subunit [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
 gi|116093855|gb|ABJ59008.1| DNA polymerase III, gamma/tau subunit [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
          Length = 592

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 59/326 (18%), Positives = 105/326 (32%), Gaps = 31/326 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPRT ++  GQ      LK     +  R +     LF GP G GKT+ A++ A+ L    
Sbjct: 11  RPRTFDDVVGQEAITDTLK----NSLIRGKVSHAFLFAGPRGTGKTSCAKIFAKALNCLN 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP-----AMEDFQLDLM 137
                P    +  LAA    +   D++ +D     S+     L         E      +
Sbjct: 67  LQEGEPCNECSNCLAADQGAMP--DIIEMDAASNNSVDEIRDLLDKVHYAPTEGKYKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++   +    I ATT +  +   +  R        F   E +
Sbjct: 125 IDEVHMLSISAFNALLKTLEEPPASVVFILATTELQKVPATIISRTQRYNFKRF-SNEAM 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              ++      G+   D+A   IA  + G  R A  +L ++  F         +    + 
Sbjct: 184 VQRMEYILGQEGVEYEDKALKVIAQVADGGMRDALSILDQLLSF-------EKSSVRYED 236

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL           +   + L  +        + +   +         I + I    +Q  
Sbjct: 237 ALEVTGF---AAQEQVEKLLLALLNGDSQMALDLAKSAIQDGASAQNILNEIISLTVQAM 293

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIPHR 334
              +T +G  L     Q +    P R
Sbjct: 294 LFTKTGQGEFLTDDFAQEIAQQSPDR 319


>gi|15896947|ref|NP_350296.1| Lon-like ATP-dependent protease [Clostridium acetobutylicum ATCC
           824]
 gi|15026822|gb|AAK81636.1|AE007867_3 Lon-like ATP-dependent protease [Clostridium acetobutylicum ATCC
           824]
 gi|325511124|gb|ADZ22760.1| Lon-like ATP-dependent protease [Clostridium acetobutylicum EA
           2018]
          Length = 634

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 58/264 (21%), Positives = 94/264 (35%), Gaps = 59/264 (22%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           SLLRP+T  E  GQ  A   L      +K  +    H++  GPPG+GKTT A++   E+ 
Sbjct: 165 SLLRPQTFSEIVGQERAIKAL-----VSKLASPYPQHIILYGPPGVGKTTAARIALEEVK 219

Query: 80  ----------------------VNFRSTSGPVIAKA---------GDLAA---------L 99
                                  + R  + P++             DLA          L
Sbjct: 220 KLKYTPFKKDANFVEVDGATLRWDPREITNPLLGSVHDPIYQGSKRDLAETGVPEPKSGL 279

Query: 100 LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG-EGPSARSVKINLSRFTLIA 158
           +T+     VLFIDEI  L ++++  L   +ED +++       P   +V   +  F    
Sbjct: 280 VTDAHGG-VLFIDEIGELDVMLQNKLLKVLEDKKVEFSSSYYDPDDENVPKYIKYFFEKG 338

Query: 159 A----------TTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAA 208
           A          T     + + L+ R    +        D+  I+   A    + + D   
Sbjct: 339 APADFVLIGATTKDPSEINSALRSRC-TEVYFEPLSSSDIMDIIDNAADKLNVLLED-GV 396

Query: 209 CEIAMRSRGTPRIAGRLLRRVRDF 232
            E+  R     R A  +L  V  +
Sbjct: 397 KELISRYTIQGRRAINILADVYGY 420


>gi|313887429|ref|ZP_07821118.1| DNA polymerase III, subunit gamma and tau [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312923071|gb|EFR33891.1| DNA polymerase III, subunit gamma and tau [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 601

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 50/252 (19%), Positives = 87/252 (34%), Gaps = 23/252 (9%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+T +E  GQ   C  LK  I+  K         LF GP G+GKT+ A+++AR +
Sbjct: 9   ARKYRPQTFDEMLGQEAICLTLKSAIKQGKIAHAY----LFCGPRGVGKTSAARILARTI 64

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHR-----LSIIVEEILYPAMEDFQ 133
                +  G       +  A L      ++  +D         +  + E++     +   
Sbjct: 65  NCEQLTPQGEACGVCPNCQAALHQ-RAFNIYELDAASNNSVDDIRRLNEDVYIRPQQGKY 123

Query: 134 LDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
              ++ E             ++++        I ATT    +   +  R  +        
Sbjct: 124 KVYIIDEVHMLSSGAFNAFLKTLEEPPGYVVFILATTEKDKVLPTILSRCQVYDFKPI-P 182

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            E +   ++R A   GL     +   IA  + G  R A  L  R+   A+      I+ E
Sbjct: 183 PEQIAEQLRRVADAEGLQYDPRSFDTIARIADGGMRDALSLFDRLASTAQ---NGVISYE 239

Query: 245 IADAALLRLAID 256
                L  L  +
Sbjct: 240 QTLQTLNILDDE 251


>gi|182416741|ref|ZP_02948139.1| ATP-dependent protease, Lon family [Clostridium butyricum 5521]
 gi|237669655|ref|ZP_04529633.1| ATP-dependent protease, Lon family [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|182379398|gb|EDT76893.1| ATP-dependent protease, Lon family [Clostridium butyricum 5521]
 gi|237654889|gb|EEP52451.1| ATP-dependent protease, Lon family [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 631

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 57/265 (21%), Positives = 93/265 (35%), Gaps = 57/265 (21%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +S LRP+   +  GQ  A  +L      +K  +    H++  GPPG+GKTT A++   ++
Sbjct: 163 MSFLRPQEFSQVIGQDRAIKSL-----ISKLSSPYPQHIILYGPPGVGKTTAARLALDKV 217

Query: 79  G----------------------VNFRSTSGPVIAKA---------GDLAAL-------- 99
                                   + R  + P++             DLA +        
Sbjct: 218 KEIPFTPFDDKSKFVEVDGTTLRWDPREITNPLLGSVHDPIYQGSKRDLAEIGIPEPKPG 277

Query: 100 -LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL----------DLMVGEGPSARSVK 148
            +T      VLFIDEI  L  +++  L   +ED ++          D M+ +        
Sbjct: 278 LVTEAHGG-VLFIDEIGELDSMLQNKLLKVLEDKRVEFSSSYYDPDDEMIPKYIKYLFDN 336

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAA 208
              + F LI ATTR     NP        +       +D+  I+   AK   + + D   
Sbjct: 337 GAPADFVLIGATTRSPSEINPALRSRCTEVYFEPLSSKDISAIIYDAAKKLNVKLED-GV 395

Query: 209 CEIAMRSRGTPRIAGRLLRRVRDFA 233
            E         R A  +L     +A
Sbjct: 396 AEKISSYTFEGRKAINMLTDAYGYA 420


>gi|126137263|ref|XP_001385155.1| DNA replication factor C [Scheffersomyces stipitis CBS 6054]
 gi|126092377|gb|ABN67126.1| DNA replication factor C [Scheffersomyces stipitis CBS 6054]
          Length = 322

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 73/213 (34%), Gaps = 28/213 (13%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE- 77
           +   RP TL+E  GQ E    +K F     A    L H+LF GPPG GKT+    +ARE 
Sbjct: 3   VEKYRPSTLDEVYGQEEIVQTVKKF-----AHENRLPHLLFYGPPGTGKTSTIIALAREI 57

Query: 78  ----LGVNFRSTSGPVIAKAGDLAALLTNL--------EDRDVLFIDEIHRLSIIVEEIL 125
                       +         +   + N             ++ +DE   ++ + +  L
Sbjct: 58  YGTNYKNMVLELNASDDRGIDVVRNQIKNFASTMQIFSRGFKLIILDEADAMTAVAQNSL 117

Query: 126 YPAMEDFQLD--LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
              +E +  +    +    + +     LSR T            + ++DR    I     
Sbjct: 118 RRIIEKYTKNTRFCILANYAHKLNPALLSRCTRFRFHPISE---DAIKDRIQNVIIKESL 174

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSR 216
           +I+         A L  L+  D       +++ 
Sbjct: 175 KIDPPAE-----AALLKLSKGDMRRALNVLQAC 202


>gi|300770797|ref|ZP_07080675.1| DNA polymerase III, gamma/tau subunit DnaX [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300762354|gb|EFK59172.1| DNA polymerase III, gamma/tau subunit DnaX [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 596

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 76/229 (33%), Gaps = 20/229 (8%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T +   GQ      LK  I   +         LF GP G+GKTT A+++A+ +
Sbjct: 8   ARKYRPVTFDSVVGQQHITGTLKNAIHNNQLAQA----FLFCGPRGVGKTTCARILAKTI 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL-----YPAMEDFQ 133
                ++         D      N     +  +D     S+     L      P      
Sbjct: 64  NCEHITSEVEAC-GVCDSCKSFQNGNSFSIHELDAASNNSVDDIRNLIDQVRIPPQSGKY 122

Query: 134 LDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
              ++ E             ++++   S    I ATT    +   +  R  I    N   
Sbjct: 123 KIYIIDEVHMLSQQAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQI-FDFNRIR 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
           +ED+   +   A+   +    +    IA ++ G  R A  +  ++  F+
Sbjct: 182 VEDMARHLAGIAEKEVVTYDLDGLHIIAQKADGGLRDALSMFDQIVSFS 230


>gi|325126251|gb|ADY85581.1| DNA polymerase III subunit gamma/tau [Lactobacillus delbrueckii
           subsp. bulgaricus 2038]
          Length = 606

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 59/326 (18%), Positives = 105/326 (32%), Gaps = 31/326 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPRT ++  GQ      LK     +  R +     LF GP G GKT+ A++ A+ L    
Sbjct: 11  RPRTFDDVVGQEAITDTLK----NSLIRGKVSHAFLFAGPRGTGKTSCAKIFAKALNCLN 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP-----AMEDFQLDLM 137
                P    +  LAA    +   D++ +D     S+     L         E      +
Sbjct: 67  LQEGEPCNECSNCLAADQGAMP--DIIEMDAASNNSVDEIRDLLDKVHYAPTEGKYKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++   +    I ATT +  +   +  R        F   E +
Sbjct: 125 IDEVHMLSISAFNALLKTLEEPPASVVFILATTELQKVPATIISRTQRYNFKRF-SNEAM 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              ++      G+   D+A   IA  + G  R A  +L ++  F         +    + 
Sbjct: 184 VQRMEYILGQEGVEYEDKALKVIAQVADGGMRDALSILDQLLSF-------EKSSVRYED 236

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL           +   + L  +        + +   +         I + I    +Q  
Sbjct: 237 ALEVTGF---AAQEQVEKLLLALLNGDSQMALDLAKSAIQDGASAQNILNEIISLTVQAM 293

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIPHR 334
              +T +G  L     Q +    P R
Sbjct: 294 LFTKTGQGEFLTDDFAQEIAQQSPDR 319


>gi|228910306|ref|ZP_04074123.1| ATP-dependent protease La [Bacillus thuringiensis IBL 200]
 gi|228849366|gb|EEM94203.1| ATP-dependent protease La [Bacillus thuringiensis IBL 200]
          Length = 556

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 56/289 (19%), Positives = 100/289 (34%), Gaps = 57/289 (19%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           R +S  +     +RP T  +  GQ +   +LK     A        HV+  GPPG+GKT 
Sbjct: 51  REISLTEPLAEKVRPTTFLDIVGQEDGIKSLK-----AALCGPNPQHVIIYGPPGVGKTA 105

Query: 70  LAQVVARELGVNFRSTS----------------------GPVIAKAGD------------ 95
            A++V  E   N +S                         P+I    D            
Sbjct: 106 AARLVLEEAKRNPKSPFRTNATFIELDATTARFDERGIADPLIGSVHDPIYQGAGAMGQA 165

Query: 96  -----LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL----MVGEGPSARS 146
                    +T+     +LFIDEI  L  I    +   +ED ++ L       E     +
Sbjct: 166 GIPQPKKGAVTDAHGG-ILFIDEIGELHPIQMNKMLKVLEDRKVFLESAYYSEENTMIPT 224

Query: 147 VKINL------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
              ++      + F L+ ATTR      P      + +     + E+++ + +  A+   
Sbjct: 225 YIHDIFQKGLPADFRLVGATTRSPEEIPPAIRSRCLEVFFRELDTEEIQKVAKNAAEKVE 284

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
           + + +     I M +R   R A  L++     A +   ++  ++     
Sbjct: 285 MQIGENGIEMIGMYARN-GREAINLVQISAGMA-INEERSFIKDEDIEW 331


>gi|289581577|ref|YP_003480043.1| Replication factor C [Natrialba magadii ATCC 43099]
 gi|289531130|gb|ADD05481.1| Replication factor C [Natrialba magadii ATCC 43099]
          Length = 341

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 51/247 (20%), Positives = 86/247 (34%), Gaps = 36/247 (14%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            +      + +  I   RP  L+E  G       L+ ++E      + L H++F GP G 
Sbjct: 19  EVAESTAGRTEVWIEKYRPEYLDEIKGHENIVPRLQRYVE-----QDDLPHLMFAGPAGT 73

Query: 66  GKTTLAQVVAREL------------GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDE 113
           GKTT AQ +ARE+              + +     V  +  D A       D  ++F+DE
Sbjct: 74  GKTTAAQAIAREVYDDDWRENFLELNASDQRGIDVVRDRIKDFARASFGGYDHRIIFLDE 133

Query: 114 IHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
              L+   +  L   ME F                   +    I +      + +P+Q R
Sbjct: 134 ADALTSDAQSALRRTMEQFS------------------NNTRFILSCNYSSQIIDPIQSR 175

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
             +  R        ++  V+  A    + VTD+    +   + G  R A   L+      
Sbjct: 176 CAV-FRFTQLTETAIEAQVREIAADQDIEVTDDGVDALVYAADGDMRKAINALQAAAVMG 234

Query: 234 EVAHAKT 240
           E    +T
Sbjct: 235 ETVDEET 241


>gi|327311517|ref|YP_004338414.1| replication factor C small subunit [Thermoproteus uzoniensis
           768-20]
 gi|326947996|gb|AEA13102.1| replication factor C small subunit [Thermoproteus uzoniensis
           768-20]
          Length = 328

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 55/233 (23%), Positives = 88/233 (37%), Gaps = 37/233 (15%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E       RPR+ EE     E  + LK F++A       + H+LF GPPG GKTT+A V+
Sbjct: 5   ELFWFEKYRPRSFEEVVDLEEVKARLKEFVKAG-----NMPHLLFYGPPGTGKTTMALVL 59

Query: 75  ARE-----LGVNFRSTSGPVIAKAGDLAALLTNLED--------RDVLFIDEIHRLSIIV 121
           ARE        N    +         +   +               ++ +DE   ++   
Sbjct: 60  ARELYGDAWRENTLELNASDERGINVIRERVKEFARTAPVGKAPFKLVILDEADNMTSDA 119

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           ++ L   ME +                 N +RF L+A    V  + +P+  R  +  R  
Sbjct: 120 QQALRRIMEMY----------------ANTTRFILLA--NYVSRIIDPIISRCAV-FRFP 160

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
               E +   +   AK  G+ VT++    I   S+G  R A  LL+     + 
Sbjct: 161 PMPKELMAKRLAYIAKQEGITVTEDGIDAIYEISQGDMRRAINLLQMAAAASR 213


>gi|281420656|ref|ZP_06251655.1| DNA polymerase III, gamma and tau subunit [Prevotella copri DSM
           18205]
 gi|281405429|gb|EFB36109.1| DNA polymerase III, gamma and tau subunit [Prevotella copri DSM
           18205]
          Length = 638

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 81/229 (35%), Gaps = 20/229 (8%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T +   GQ    + LK  +++ K         LF GP G+GKTT A++ A+ +
Sbjct: 8   ARKYRPMTFDSVVGQSALTTTLKNAVKSGKLAHAY----LFCGPRGVGKTTCARIFAKAI 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQ 133
                   G    +     A        ++  +D      + ++ +++E+   P      
Sbjct: 64  NCEHPREDGEACNECESCRA-FNEQRSYNIFELDAASNNGVDQIKVLMEQTRIPPQVGKY 122

Query: 134 LDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
              ++ E             ++++        I ATT    +   +  R  I        
Sbjct: 123 KVFIIDEVHMLSTAAFNAFLKTLEEPPQHVIFILATTEKHKILPTILSRCQIYDFERM-T 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
           + +    ++  A+  G+   ++A   IA ++ G  R A  +  +   F 
Sbjct: 182 VANTINHLKMVAEKEGIQYEEQALAVIAEKADGGMRDALSIFDQAASFC 230


>gi|304437862|ref|ZP_07397810.1| lon family ATP-dependent protease [Selenomonas sp. oral taxon 149
           str. 67H29BP]
 gi|304369162|gb|EFM22839.1| lon family ATP-dependent protease [Selenomonas sp. oral taxon 149
           str. 67H29BP]
          Length = 718

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 69/313 (22%), Positives = 108/313 (34%), Gaps = 68/313 (21%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           + LLRP+T +E  GQ  A  +L      AK  +    H+L  GPPG+GKTT A++V    
Sbjct: 170 MELLRPKTFDEIVGQERAVRSL-----MAKLSSPYPQHLLLYGPPGVGKTTAARLVLEAA 224

Query: 79  G----------------------VNFRSTSGPVIAKAGD---------LA---------A 98
                                   + R  + P++    D         LA          
Sbjct: 225 KKRAVSPFAETAPFVETDGTTLRWDPRDMTNPLLGSVHDPIYQGAQKNLADSGVPEPKPG 284

Query: 99  LLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSR----- 153
           L+T+     +LFIDEI  +  +++  L   +ED +      E          +       
Sbjct: 285 LVTDAHGG-ILFIDEIGEMDEMLQNKLLKVLEDKRAYF---ESAYYDPDDKRVPPYIRKL 340

Query: 154 --------FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTD 205
                   F LI ATTR     NP        I         ++TIV+  A+   +A+  
Sbjct: 341 FEEGAPADFVLIGATTREPDHINPALRSRCAEIYFEPLTPAHIRTIVENAAERLHVALAP 400

Query: 206 EAACEIAMRSRGTPRIAGRLLRRVRDFA-----EVAHAKTITREIADAALLRLAIDKMGF 260
             A E+        R A  +L      A     +    + ++RE  +        +  G 
Sbjct: 401 RTA-ELISTYTIEGRKAINILADAYSLALNRMDDAEVERIVSRETIEPTSSVEQHETQGD 459

Query: 261 DQLDLRYLTMIAR 273
             +D+   T IA 
Sbjct: 460 ANVDVSRETSIAE 472


>gi|229071980|ref|ZP_04205190.1| ATP-dependent protease La [Bacillus cereus F65185]
 gi|228711139|gb|EEL63104.1| ATP-dependent protease La [Bacillus cereus F65185]
          Length = 556

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 56/289 (19%), Positives = 100/289 (34%), Gaps = 57/289 (19%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           R +S  +     +RP T  +  GQ +   +LK     A        HV+  GPPG+GKT 
Sbjct: 51  REISLTEPLAEKVRPTTFLDIVGQEDGIKSLK-----AALCGPNPQHVIIYGPPGVGKTA 105

Query: 70  LAQVVARELGVNFRSTS----------------------GPVIAKAGD------------ 95
            A++V  E   N +S                         P+I    D            
Sbjct: 106 AARLVLEEAKRNPKSPFRTNATFIELDATTARFDERGIADPLIGSVHDPIYQGAGAMGQA 165

Query: 96  -----LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL----MVGEGPSARS 146
                    +T+     +LFIDEI  L  I    +   +ED ++ L       E     +
Sbjct: 166 GIPQPKKGAVTDAHGG-ILFIDEIGELHPIQMNKMLKVLEDRKVFLESAYYSEENTMIPT 224

Query: 147 VKINL------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
              ++      + F L+ ATTR      P      + +     + E+++ + +  A+   
Sbjct: 225 YIHDIFQKGLPADFRLVGATTRSPEEIPPAIRSRCLEVFFRELDTEEIQKVAKNAAEKVE 284

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
           + + +     I M +R   R A  L++     A +   ++  ++     
Sbjct: 285 MQIGENGIEMIGMYARN-GREAINLVQISAGMA-INEERSFIKDEDIEW 331


>gi|218899639|ref|YP_002448050.1| ATP-dependent protease LonB [Bacillus cereus G9842]
 gi|228903000|ref|ZP_04067140.1| ATP-dependent protease La [Bacillus thuringiensis IBL 4222]
 gi|228967574|ref|ZP_04128600.1| ATP-dependent protease La [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|218544615|gb|ACK97009.1| ATP-dependent protease LonB [Bacillus cereus G9842]
 gi|228792153|gb|EEM39729.1| ATP-dependent protease La [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228856676|gb|EEN01196.1| ATP-dependent protease La [Bacillus thuringiensis IBL 4222]
          Length = 556

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 56/289 (19%), Positives = 100/289 (34%), Gaps = 57/289 (19%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           R +S  +     +RP T  +  GQ +   +LK     A        HV+  GPPG+GKT 
Sbjct: 51  REISLTEPLAEKVRPTTFLDIVGQEDGIKSLK-----AALCGPNPQHVIIYGPPGVGKTA 105

Query: 70  LAQVVARELGVNFRSTS----------------------GPVIAKAGD------------ 95
            A++V  E   N +S                         P+I    D            
Sbjct: 106 AARLVLEEAKRNPKSPFRTNATFIELDATTARFDERGIADPLIGSVHDPIYQGAGAMGQA 165

Query: 96  -----LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL----MVGEGPSARS 146
                    +T+     +LFIDEI  L  I    +   +ED ++ L       E     +
Sbjct: 166 GIPQPKKGAVTDAHGG-ILFIDEIGELHPIQMNKMLKVLEDRKVFLESAYYSEENTMIPT 224

Query: 147 VKINL------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
              ++      + F L+ ATTR      P      + +     + E+++ + +  A+   
Sbjct: 225 YIHDIFQKGLPADFRLVGATTRSPEEIPPAIRSRCLEVFFRELDTEEIQKVAKNAAEKVE 284

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
           + + +     I M +R   R A  L++     A +   ++  ++     
Sbjct: 285 MQIGENGIEMIGMYARN-GREAINLVQISAGMA-INEERSFIKDEDIEW 331


>gi|45269731|gb|AAS56246.1| YJR068W [Saccharomyces cerevisiae]
          Length = 353

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 44/258 (17%), Positives = 81/258 (31%), Gaps = 48/258 (18%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L +     +   +   RP+ L+E T Q  A + LK  +++A      L H+LF GPPG G
Sbjct: 16  LAAEQSLAQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSA-----NLPHMLFYGPPGTG 70

Query: 67  KTTLAQVVARE------LGVNFRSTSGPVIAKAGDLAALLTNLEDRD------------- 107
           KT+    + +E      +       +         +   + N                  
Sbjct: 71  KTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYP 130

Query: 108 -----VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTR 162
                ++ +DE   ++   +  L   ME +                  ++RF        
Sbjct: 131 CPPYKIIILDEADSMTADAQSALRRTMETYS----------------GVTRF--CLICNY 172

Query: 163 VGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
           V  + +PL  R     R    +  +    ++  ++   +   D     I   S G  R  
Sbjct: 173 VTRIIDPLASRCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRG 231

Query: 223 GRLLRRVRDFAEVAHAKT 240
             LL+     A+      
Sbjct: 232 ITLLQSASKGAQYLGDGK 249


>gi|317504994|ref|ZP_07962942.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella salivae DSM
           15606]
 gi|315663876|gb|EFV03595.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella salivae DSM
           15606]
          Length = 599

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 47/252 (18%), Positives = 88/252 (34%), Gaps = 24/252 (9%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T +   GQ    + LK  +++ K         LF GP G+GKTT A++ A+ +
Sbjct: 8   ARKYRPMTFDSVVGQHALTTTLKNAVKSGKLAHAY----LFCGPRGVGKTTCARIFAKAI 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI------IVEEILYPAMEDF 132
                S  G          A        ++  +D     S+      + +  + P +  +
Sbjct: 64  NCENPSQDGEACNVCESCKA-FNEQRSYNIFELDAASNNSVENIKALMEQTRIPPQIGRY 122

Query: 133 QLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           ++ ++               ++++   +    I ATT    +   +  R  I        
Sbjct: 123 KVFIIDEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQIYDFERM-T 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           + +    ++  A   G+   DEA   IA ++ G  R A  +  +   F +      IT +
Sbjct: 182 VGNTIEHLKSVAAKEGITYDDEALAVIAEKADGGMRDALSIFDQAASFCQ----GNITYQ 237

Query: 245 IADAALLRLAID 256
                L  L  D
Sbjct: 238 KVIEDLNVLDSD 249


>gi|261880186|ref|ZP_06006613.1| DNA polymerase III [Prevotella bergensis DSM 17361]
 gi|270333160|gb|EFA43946.1| DNA polymerase III [Prevotella bergensis DSM 17361]
          Length = 602

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 52/305 (17%), Positives = 108/305 (35%), Gaps = 34/305 (11%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARE 77
               RP T     GQ    + LK  ++      + L H  LF GP G+GKTT A++ A+ 
Sbjct: 8   ARKYRPMTFSAVVGQEALTTTLKNAVK-----GDKLAHAYLFCGPRGVGKTTCARIFAKT 62

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI------IVEEILYPAMED 131
           +     S  G    +     +         +  +D     S+      + +  + P    
Sbjct: 63  INCEHPSADGEACNECSSCKSFNEGRSMN-IFELDAASNNSVENIKTLMEQTQIPPQTGR 121

Query: 132 FQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +++ ++               ++++   +    I ATT    +   +  R  I       
Sbjct: 122 YKVFIIDEVHMLSTSAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQIYDFERMT 181

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE--VAHAKTI 241
             E +   +++ A   G++  +EA   IA ++ G  R A  +  +V  + +  +   K +
Sbjct: 182 VPETIDH-LKKVADQEGISYEEEALGIIAEKADGGMRDALSIFDQVASYCQGNITFQKVL 240

Query: 242 TREIADAALLRLAIDKMGFDQL--DLRYL--TMIARNFGGGPVGIETISA-----GLSEP 292
                  A     I  +  +    D+  L   +IA+ F  G + I  +++      ++  
Sbjct: 241 EDLNVLDAENYFHIIDLAIENKVSDIMVLVNRIIAKGFDAGNL-INGLASHVRNVMMAND 299

Query: 293 RDAIE 297
              + 
Sbjct: 300 PQTLP 304


>gi|228954754|ref|ZP_04116776.1| ATP-dependent protease La [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|229081737|ref|ZP_04214230.1| ATP-dependent protease La [Bacillus cereus Rock4-2]
 gi|228701582|gb|EEL54075.1| ATP-dependent protease La [Bacillus cereus Rock4-2]
 gi|228804952|gb|EEM51549.1| ATP-dependent protease La [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
          Length = 556

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 56/289 (19%), Positives = 100/289 (34%), Gaps = 57/289 (19%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           R +S  +     +RP T  +  GQ +   +LK     A        HV+  GPPG+GKT 
Sbjct: 51  REISLTEPLAEKVRPTTFLDIVGQEDGIKSLK-----AALCGPNPQHVIIYGPPGVGKTA 105

Query: 70  LAQVVARELGVNFRSTS----------------------GPVIAKAGD------------ 95
            A++V  E   N +S                         P+I    D            
Sbjct: 106 AARLVLEEAKRNPKSPFRTNATFIELDATTARFDERGIADPLIGSVHDPIYQGAGAMGQA 165

Query: 96  -----LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL----MVGEGPSARS 146
                    +T+     +LFIDEI  L  I    +   +ED ++ L       E     +
Sbjct: 166 GIPQPKKGAVTDAHGG-ILFIDEIGELHPIQMNKMLKVLEDRKVFLESAYYSEENTMIPT 224

Query: 147 VKINL------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
              ++      + F L+ ATTR      P      + +     + E+++ + +  A+   
Sbjct: 225 YIHDIFQKGLPADFRLVGATTRSPEEIPPAIRSRCLEVFFRELDTEEIQKVAKNAAEKVE 284

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
           + + +     I M +R   R A  L++     A +   ++  ++     
Sbjct: 285 MQIGENGIEMIGMYARN-GREAINLVQISAGMA-INEERSFIKDEDIEW 331


>gi|104774441|ref|YP_619421.1| DNA polymerase III, gamma/tau subunit [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|103423522|emb|CAI98424.1| DNA polymerase III, gamma/tau subunit [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
          Length = 607

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 59/326 (18%), Positives = 105/326 (32%), Gaps = 31/326 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPRT ++  GQ      LK     +  R +     LF GP G GKT+ A++ A+ L    
Sbjct: 11  RPRTFDDVVGQEAITDTLK----NSLIRGKVSHAFLFAGPRGTGKTSCAKIFAKALNCLN 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP-----AMEDFQLDLM 137
                P    +  LAA    +   D++ +D     S+     L         E      +
Sbjct: 67  LQEGEPCNECSNCLAADQGAMP--DIIEMDAASNNSVDEIRDLLDKVHYAPTEGKYKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++   +    I ATT +  +   +  R        F   E +
Sbjct: 125 IDEVHMLSISAFNALLKTLEEPPASVVFILATTELQKVPATIISRTQRYNFKRF-SNEAM 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              ++      G+   D+A   IA  + G  R A  +L ++  F         +    + 
Sbjct: 184 VQRMEYILGQEGVEYEDKALKVIAQVADGGMRDALSILDQLLSF-------EKSSVRYED 236

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           AL           +   + L  +        + +   +         I + I    +Q  
Sbjct: 237 ALEVTGF---AAQEQVEKLLLALLNGDSQMALDLAKSAIQDGASAQNILNEIISLTVQAM 293

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIPHR 334
              +T +G  L     Q +    P R
Sbjct: 294 LFTKTGQGEFLTDDFAQEIAQQSPDR 319


>gi|228960747|ref|ZP_04122386.1| ATP-dependent protease La [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228798963|gb|EEM45938.1| ATP-dependent protease La [Bacillus thuringiensis serovar pakistani
           str. T13001]
          Length = 556

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 56/289 (19%), Positives = 100/289 (34%), Gaps = 57/289 (19%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           R +S  +     +RP T  +  GQ +   +LK     A        HV+  GPPG+GKT 
Sbjct: 51  REISLTEPLAEKVRPTTFLDIVGQEDGIKSLK-----AALCGPNPQHVIIYGPPGVGKTA 105

Query: 70  LAQVVARELGVNFRSTS----------------------GPVIAKAGD------------ 95
            A++V  E   N +S                         P+I    D            
Sbjct: 106 AARLVLEEAKRNPKSPFRTNATFIELDATTARFDERGIADPLIGSVHDPIYQGAGAMGQA 165

Query: 96  -----LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL----MVGEGPSARS 146
                    +T+     +LFIDEI  L  I    +   +ED ++ L       E     +
Sbjct: 166 GIPQPKKGAVTDAHGG-ILFIDEIGELHPIQMNKMLKVLEDRKVFLESAYYSEENTMIPT 224

Query: 147 VKINL------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
              ++      + F L+ ATTR      P      + +     + E+++ + +  A+   
Sbjct: 225 YIHDIFQKGLPADFRLVGATTRSPEEIPPAIRSRCLEVFFRELDTEEIQKVAKNAAEKVE 284

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
           + + +     I M +R   R A  L++     A +   ++  ++     
Sbjct: 285 MQIGENGIEMIGMYARN-GREAINLVQISAGMA-INEERSFIKDEDIEW 331


>gi|218234769|ref|YP_002369278.1| ATP-dependent protease LonB [Bacillus cereus B4264]
 gi|229152673|ref|ZP_04280861.1| ATP-dependent protease La [Bacillus cereus m1550]
 gi|218162726|gb|ACK62718.1| ATP-dependent protease LonB [Bacillus cereus B4264]
 gi|228630819|gb|EEK87460.1| ATP-dependent protease La [Bacillus cereus m1550]
          Length = 556

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 56/289 (19%), Positives = 100/289 (34%), Gaps = 57/289 (19%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           R +S  +     +RP T  +  GQ +   +LK     A        HV+  GPPG+GKT 
Sbjct: 51  REISLTEPLAEKVRPTTFLDIVGQEDGIKSLK-----AALCGPNPQHVIIYGPPGVGKTA 105

Query: 70  LAQVVARELGVNFRSTS----------------------GPVIAKAGD------------ 95
            A++V  E   N +S                         P+I    D            
Sbjct: 106 AARLVLEEAKRNPKSPFRTNATFIELDATTARFDERGIADPLIGSVHDPIYQGAGAMGQA 165

Query: 96  -----LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL----MVGEGPSARS 146
                    +T+     +LFIDEI  L  I    +   +ED ++ L       E     +
Sbjct: 166 GIPQPKKGAVTDAHGG-ILFIDEIGELHPIQMNKMLKVLEDRKVFLESAYYSEENTMIPT 224

Query: 147 VKINL------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
              ++      + F L+ ATTR      P      + +     + E+++ + +  A+   
Sbjct: 225 YIHDIFQKGLPADFRLVGATTRSPEEIPPAIRSRCLEVFFRELDTEEIQKVAKNAAEKVE 284

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
           + + +     I M +R   R A  L++     A +   ++  ++     
Sbjct: 285 MQIGENGIEMIGMYARN-GREAINLVQISAGMA-INEERSFIKDEDIEW 331


>gi|228941638|ref|ZP_04104185.1| ATP-dependent protease La [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228974567|ref|ZP_04135133.1| ATP-dependent protease La [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228981162|ref|ZP_04141462.1| ATP-dependent protease La [Bacillus thuringiensis Bt407]
 gi|228778362|gb|EEM26629.1| ATP-dependent protease La [Bacillus thuringiensis Bt407]
 gi|228784970|gb|EEM32983.1| ATP-dependent protease La [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228817850|gb|EEM63928.1| ATP-dependent protease La [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|326942250|gb|AEA18146.1| ATP-dependent protease La [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 556

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 56/289 (19%), Positives = 100/289 (34%), Gaps = 57/289 (19%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           R +S  +     +RP T  +  GQ +   +LK     A        HV+  GPPG+GKT 
Sbjct: 51  REISLTEPLAEKVRPTTFLDIVGQEDGIKSLK-----AALCGPNPQHVIIYGPPGVGKTA 105

Query: 70  LAQVVARELGVNFRSTS----------------------GPVIAKAGD------------ 95
            A++V  E   N +S                         P+I    D            
Sbjct: 106 AARLVLEEAKRNPKSPFRTNATFIELDATTARFDERGIADPLIGSVHDPIYQGAGAMGQA 165

Query: 96  -----LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL----MVGEGPSARS 146
                    +T+     +LFIDEI  L  I    +   +ED ++ L       E     +
Sbjct: 166 GIPQPKKGAVTDAHGG-ILFIDEIGELHPIQMNKMLKVLEDRKVFLESAYYSEENTMIPT 224

Query: 147 VKINL------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
              ++      + F L+ ATTR      P      + +     + E+++ + +  A+   
Sbjct: 225 YIHDIFQKGLPADFRLVGATTRSPEEIPPAIRSRCLEVFFRELDTEEIQKVAKNAAEKVE 284

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
           + + +     I M +R   R A  L++     A +   ++  ++     
Sbjct: 285 MQIGENGIEMIGMYARN-GREAINLVQISAGMA-INEERSFIKDEDIEW 331


>gi|332798603|ref|YP_004460102.1| anti-sigma H sporulation factor, LonB [Tepidanaerobacter sp. Re1]
 gi|332696338|gb|AEE90795.1| anti-sigma H sporulation factor, LonB [Tepidanaerobacter sp. Re1]
          Length = 547

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 59/295 (20%), Positives = 95/295 (32%), Gaps = 56/295 (18%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           R +S  +      RP +  E  GQ +    L+     A        HV+  GPPG+GKT 
Sbjct: 52  RQISLTEPLAEKTRPSSFNEIVGQADGLKALR-----AALCGPNPQHVILYGPPGIGKTA 106

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDV--------------------- 108
            A++V  E      S  GP  AK  ++ A +   ++R +                     
Sbjct: 107 AARLVLEEAKKTRGSPFGPE-AKFIEVDATIARFDERGIADPLIGSVHDPIYQGAGPLGV 165

Query: 109 ------------------LFIDEIHRLSIIVEEILYPAMEDFQLDL----MVGEGPSARS 146
                             LFIDEI  L  I    L   +ED ++ L       E  +   
Sbjct: 166 AGIPQPKPGAVTKAHGGVLFIDEIGELHPIQMNKLLKVLEDRKVFLESAYYSSEDTNIPL 225

Query: 147 V------KINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
                  K   + F LI ATTR      P      + I       +D+  I++  A    
Sbjct: 226 HIREIFEKGLPADFRLIGATTRKPEEIPPAIRSRCLEIFFKPLSPDDIDIIIRNAANKIE 285

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255
             + + +   I   +    R +  +++     A   + K I     +  +     
Sbjct: 286 FDIDELSVNIIKKYANN-GRESVNIIQMAAGLATTENRKRIEARDVEWVINSGQY 339


>gi|327311922|ref|YP_004338819.1| replication factor C small subunit [Thermoproteus uzoniensis
           768-20]
 gi|326948401|gb|AEA13507.1| replication factor C small subunit [Thermoproteus uzoniensis
           768-20]
          Length = 322

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 58/250 (23%), Positives = 94/250 (37%), Gaps = 42/250 (16%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
            E       RPR+ EE     E  + LK F++A       + H+LF GPPG GKTT+A V
Sbjct: 2   SELFWFEKYRPRSFEEVVDLEEVKARLKEFVKAG-----NMPHLLFYGPPGTGKTTMALV 56

Query: 74  VARE-----LGVNFRSTSGPVIAKAGDLAALLTNLED--------RDVLFIDEIHRLSII 120
           +ARE        N    +         +   +               ++ +DE   ++  
Sbjct: 57  LARELYGDAWRENTLELNASDERGINVIRERVKEFARTAPVGKAPFKLVILDEADNMTSD 116

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            ++ L   ME +                 N +RF L+A    V  +  P+Q R  I  R 
Sbjct: 117 AQQALRRIMEMY----------------ANTTRFILLA--NYVSGIIEPIQSRCAI-FRF 157

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           +    E + + ++  A+  G+ ++ EA   I   ++G  R A   L+           K 
Sbjct: 158 SPLPKEAVLSRLRFIAEQEGVKISQEALDAIFDFTQGDMRRAITALQIASSMT-----KA 212

Query: 241 ITREIADAAL 250
           +  E    AL
Sbjct: 213 VDEEAVAKAL 222


>gi|257052996|ref|YP_003130829.1| replication factor C small subunit [Halorhabdus utahensis DSM
           12940]
 gi|256691759|gb|ACV12096.1| Replication factor C [Halorhabdus utahensis DSM 12940]
          Length = 326

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 53/251 (21%), Positives = 95/251 (37%), Gaps = 39/251 (15%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M + E   S    +++  I   RP+TLE+  G       L  ++    +R + L H+LF 
Sbjct: 1   MSEAE---SARAGRQEVWIEKYRPQTLEDIAGHEAIVERLGSYV----SRND-LSHMLFA 52

Query: 61  GPPGLGKTTLAQVVARE-----LGVNFRSTSGP-------VIAKAGDLAALLTNLEDRDV 108
           GP G+GKTT A  +ARE        NF   +         V  +    A       D  +
Sbjct: 53  GPAGVGKTTAATAIARELYGEDWEENFLELNASDERGIDVVRDRVKSFARTSFGGYDYRI 112

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +F+DE   L+   +  L   ME F                   +    I +      + +
Sbjct: 113 IFLDEADALTADAQSALRRTMEQFS------------------NNVRFILSCNYSSQIID 154

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
           P+Q R  +  R +    E ++  +++ A+   + VT++    +   + G  R A   L+ 
Sbjct: 155 PIQSRCAV-FRFSPLADEAVEAQIRQIAQEEVIDVTEDGIEALVYVAGGDMRKAINGLQA 213

Query: 229 VRDFAEVAHAK 239
                +  + +
Sbjct: 214 ASMSGDTVNEE 224


>gi|171185161|ref|YP_001794080.1| replication factor C small subunit [Thermoproteus neutrophilus
           V24Sta]
 gi|170934373|gb|ACB39634.1| Replication factor C [Thermoproteus neutrophilus V24Sta]
          Length = 319

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 58/249 (23%), Positives = 98/249 (39%), Gaps = 41/249 (16%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
            E       RPR+ +E     E  S L+ F+     R+  + H+LF GPPG GKTT+A V
Sbjct: 2   SELFWFEKYRPRSFDEVVDLEEVKSRLREFV-----RSGNMPHLLFYGPPGTGKTTMALV 56

Query: 74  VAR------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           +AR            EL  +       +  +  + A          ++ +DE   ++   
Sbjct: 57  LARELYGEYWRENTLELNASDERGINVIRERVKEFARTAPIKAPFKLVILDEADNMTSDA 116

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           ++ L   ME                +    +RF L+A    V  +  P+Q R  + +R N
Sbjct: 117 QQALRRIME----------------IYAQNTRFILLA--NYVSGIIEPIQSRV-VMVRFN 157

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
               + +   ++  A+  G+  +D+A   I   ++G  R A   L+        A ++ I
Sbjct: 158 PLPKDAVIARLRYIAENEGIKASDDALETIFEFTQGDMRKAINALQIAA-----ATSREI 212

Query: 242 TREIADAAL 250
           T E    AL
Sbjct: 213 TEETVAKAL 221


>gi|332299592|ref|YP_004441513.1| DNA polymerase III, subunits gamma and tau [Porphyromonas
           asaccharolytica DSM 20707]
 gi|332176655|gb|AEE12345.1| DNA polymerase III, subunits gamma and tau [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 616

 Score = 76.7 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 50/252 (19%), Positives = 87/252 (34%), Gaps = 23/252 (9%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+T +E  GQ   C  LK  I+  K         LF GP G+GKT+ A+++AR +
Sbjct: 22  ARKYRPQTFDEMLGQEAICLTLKSAIKQGKIAHAY----LFCGPRGVGKTSAARILARTI 77

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHR-----LSIIVEEILYPAMEDFQ 133
                +  G       +  A L      ++  +D         +  + E++     +   
Sbjct: 78  NCEQLTPQGEACGVCPNCQAALHQ-RAFNIYELDAASNNSVDDIRRLNEDVYIRPQQGKY 136

Query: 134 LDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
              ++ E             ++++        I ATT    +   +  R  +        
Sbjct: 137 KVYIIDEVHMLSSGAFNAFLKTLEEPPGYVVFILATTEKDKVLPTILSRCQVYDFKPI-P 195

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            E +   ++R A   GL     +   IA  + G  R A  L  R+   A+      I+ E
Sbjct: 196 PEQIAEQLRRVADAEGLQYDPRSFDTIARIADGGMRDALSLFDRLASTAQ---NGVISYE 252

Query: 245 IADAALLRLAID 256
                L  L  +
Sbjct: 253 QTLQTLNILDDE 264


>gi|295702260|ref|YP_003595335.1| DNA polymerase III subunits gamma and tau [Bacillus megaterium DSM
           319]
 gi|294799919|gb|ADF36985.1| DNA polymerase III, subunits gamma and tau [Bacillus megaterium DSM
           319]
          Length = 562

 Score = 76.7 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 48/237 (20%), Positives = 87/237 (36%), Gaps = 27/237 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A   + RP++  +  GQ      L+  +       E   H  LF GP G GKTT A+++A
Sbjct: 5   ALYRVYRPQSFNDVVGQQHIIKTLQNAL-----VQEKFSHAYLFSGPRGTGKTTAAKILA 59

Query: 76  RELGVNFRSTSGPVIAKAGDLAAL--LTNLEDRDVLFID-----EIHRLSIIVEEILYPA 128
           + +         P+     + A    +T+    DV+ ID      +  +  I +++ Y  
Sbjct: 60  KAVNCEK----APIAEPCNECATCRGITDGSISDVIEIDAASNNGVDEIRDIRDKVKYAP 115

Query: 129 MEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
                   ++ E             ++++   +    I ATT    +   +  R      
Sbjct: 116 SAVRYKVYIIDEVHMLSIGAFNALLKTLEEPPAHVIFILATTEPHKIPLTIISRCQ-RFD 174

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
                 ED+   ++       L V+++A  EIA  S G  R A  LL +   ++   
Sbjct: 175 FKRISPEDIVYRMKEVLGSEELEVSEDALYEIAKASEGGMRDALSLLDQAISYSTEK 231


>gi|134301131|ref|YP_001114627.1| endopeptidase La [Desulfotomaculum reducens MI-1]
 gi|134053831|gb|ABO51802.1| Endopeptidase La [Desulfotomaculum reducens MI-1]
          Length = 648

 Score = 76.7 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 58/278 (20%), Positives = 95/278 (34%), Gaps = 57/278 (20%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV-- 74
           + + +LRP + EE  GQ  A   L      AK  +    H++  GPPG+GKTT A++   
Sbjct: 167 SAMEILRPESFEEVIGQERAVKAL-----LAKLASPFPQHIILYGPPGVGKTTAARLALE 221

Query: 75  --------------------ARELGVNFRSTSGPVIAKA---------GDLAA------- 98
                                  L  + R  + P++             DLA        
Sbjct: 222 VSKGIKGAPFAKDAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARKDLAETGIPEPK 281

Query: 99  --LLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL--DLMVGEGPSARSVKINLS-- 152
             L+T+     +LFIDEI  L   ++  L   +ED ++  D    +       K      
Sbjct: 282 LGLVTDAHGG-ILFIDEIGELDPALQNKLLKVLEDKRVFFDSAYYDSTDNNVPKYIKKIF 340

Query: 153 ------RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDE 206
                  F LI ATTR     NP        +         ++ I+++ A+   + +  +
Sbjct: 341 EEGAPADFVLIGATTRDAEDINPAVRSRCAEVFFEPLTPTAIQGIIKQAAQKLKVEIDKQ 400

Query: 207 AACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
               IA  +    R A  +L      A     +    +
Sbjct: 401 VPEIIAEYT-IEGRKAINILADAYGLACFRQQQEQLED 437


>gi|282856831|ref|ZP_06266090.1| DNA polymerase III subunit tau [Pyramidobacter piscolens W5455]
 gi|282585341|gb|EFB90650.1| DNA polymerase III subunit tau [Pyramidobacter piscolens W5455]
          Length = 640

 Score = 76.7 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 53/246 (21%), Positives = 96/246 (39%), Gaps = 27/246 (10%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVAREL 78
              RP+   +  GQ  A   +   IE+      A+ H  LF GP G GKTT+A++ A+ +
Sbjct: 7   RRYRPQKFSDVVGQSAAIGVITRAIESG-----AIGHAYLFSGPRGCGKTTVARLFAKAV 61

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHR-----LSIIVEEILYPAMEDFQ 133
               ++ + P   +     A+       DV+ ID         +  + E +   +     
Sbjct: 62  NCPSKTGAEP-CNECETCRAIREG-SCLDVIEIDGASNNSVDEIRNLKEHVALASFTCPY 119

Query: 134 LDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
              ++ E             ++++    R   + ATT    +   ++ R    I  +   
Sbjct: 120 KVYIIDEVHMLSISAFNALLKTLEEPPERVIFVLATTAPHKVPVTIRSRCQ-HIPFHGMT 178

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +E +   +++ ++   +   DEA  EIA  S G  R A  L+ +    A    A ++TRE
Sbjct: 179 LEQIVNRLKQVSEAERIDARDEALWEIARNSEGGMRDALSLMEQ----AIALGAGSVTRE 234

Query: 245 IADAAL 250
             D  L
Sbjct: 235 TVDKLL 240


>gi|206969717|ref|ZP_03230671.1| ATP-dependent protease LonB [Bacillus cereus AH1134]
 gi|206735405|gb|EDZ52573.1| ATP-dependent protease LonB [Bacillus cereus AH1134]
          Length = 556

 Score = 76.7 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 56/289 (19%), Positives = 100/289 (34%), Gaps = 57/289 (19%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           R +S  +     +RP T  +  GQ +   +LK     A        HV+  GPPG+GKT 
Sbjct: 51  REISLTEPLAEKVRPTTFLDIVGQEDGIKSLK-----AALCGPNPQHVIIYGPPGVGKTA 105

Query: 70  LAQVVARELGVNFRSTS----------------------GPVIAKAGD------------ 95
            A++V  E   N +S                         P+I    D            
Sbjct: 106 AARLVLEEAKRNPKSPFRTNATFIELDATTARFDERGIADPLIGSVHDPIYQGAGAMGQA 165

Query: 96  -----LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL----MVGEGPSARS 146
                    +T+     +LFIDEI  L  I    +   +ED ++ L       E     +
Sbjct: 166 GIPQPKKGAVTDAHGG-ILFIDEIGELHPIQMNKMLKVLEDRKVFLESAYYSEENTMIPT 224

Query: 147 VKINL------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
              ++      + F L+ ATTR      P      + +     + E+++ + +  A+   
Sbjct: 225 YIHDIFQKGLPADFRLVGATTRSPEEIPPAIRSRCLEVFFRELDTEEIQKVAKNAAEKVE 284

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
           + + +     I M +R   R A  L++     A +   ++  ++     
Sbjct: 285 MQIGENGIEMIGMYARN-GREAINLVQISAGMA-INEERSFIKDEDIEW 331


>gi|68490424|ref|XP_710962.1| hypothetical protein CaO19.10723 [Candida albicans SC5314]
 gi|46432227|gb|EAK91721.1| hypothetical protein CaO19.10723 [Candida albicans SC5314]
          Length = 361

 Score = 76.7 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 44/251 (17%), Positives = 79/251 (31%), Gaps = 16/251 (6%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE- 77
           +   RP +LEE  GQ E    ++ F+E  K     L H+LF GPPG GKT+    +A+E 
Sbjct: 26  VEKYRPDSLEEVKGQQEIVDTVRKFVETGK-----LPHLLFYGPPGTGKTSTIIALAKEI 80

Query: 78  -----LGVNFRSTSGPVIAKAGDLAALLTN-LEDRDVLFIDEIHRLSIIVEEILYPAMED 131
                        +         +   + N    R +   +     S          +++
Sbjct: 81  YGATNYKNMILELNASDDRGIDVVRNQIKNFASTRQIFTKNTSQTASNNQ--FKLIILDE 138

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
                 V +    R ++                 L   L  R     R    +I  +K  
Sbjct: 139 ADAMTNVAQNSLRRVIEKFTKNCRFCILANYSHKLNPALISRC-TRFRFTPIDISAIKDR 197

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           +        + ++ EA   +   S G  R A  +L+  +        +       +  + 
Sbjct: 198 LNTVIIKENVNISPEAIDALLKLSNGDMRRALNVLQSCKAALGDEEKEEDGHANDEIDVD 257

Query: 252 RLAIDKMGFDQ 262
            +  D +G   
Sbjct: 258 MI-YDCVGAPH 267


>gi|190409543|gb|EDV12808.1| replication factor C subunit 2 [Saccharomyces cerevisiae RM11-1a]
          Length = 353

 Score = 76.7 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 44/258 (17%), Positives = 81/258 (31%), Gaps = 48/258 (18%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L +     +   +   RP+ L+E T Q  A + LK  +++A      L H+LF GPPG G
Sbjct: 16  LAAEQSLAQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSA-----NLPHMLFYGPPGTG 70

Query: 67  KTTLAQVVARE------LGVNFRSTSGPVIAKAGDLAALLTNLEDRD------------- 107
           KT+    + +E      +       +         +   + N                  
Sbjct: 71  KTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYP 130

Query: 108 -----VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTR 162
                ++ +DE   ++   +  L   ME +                  ++RF        
Sbjct: 131 CPPYKIIILDEADSMTADAQSALRRTMETYS----------------GVTRF--CLICNY 172

Query: 163 VGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
           V  + +PL  R     R    +  +    ++  ++   +   D     I   S G  R  
Sbjct: 173 VTRIIDPLASRCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRG 231

Query: 223 GRLLRRVRDFAEVAHAKT 240
             LL+     A+      
Sbjct: 232 ITLLQSASKRAQYLGDGK 249


>gi|30022559|ref|NP_834190.1| ATP-dependent protease La [Bacillus cereus ATCC 14579]
 gi|229111942|ref|ZP_04241486.1| ATP-dependent protease La [Bacillus cereus Rock1-15]
 gi|229129763|ref|ZP_04258730.1| ATP-dependent protease La [Bacillus cereus BDRD-Cer4]
 gi|229147041|ref|ZP_04275401.1| ATP-dependent protease La [Bacillus cereus BDRD-ST24]
 gi|296504962|ref|YP_003666662.1| ATP-dependent protease La [Bacillus thuringiensis BMB171]
 gi|29898117|gb|AAP11391.1| ATP-dependent protease La [Bacillus cereus ATCC 14579]
 gi|228636429|gb|EEK92899.1| ATP-dependent protease La [Bacillus cereus BDRD-ST24]
 gi|228653679|gb|EEL09550.1| ATP-dependent protease La [Bacillus cereus BDRD-Cer4]
 gi|228671506|gb|EEL26806.1| ATP-dependent protease La [Bacillus cereus Rock1-15]
 gi|296326014|gb|ADH08942.1| ATP-dependent protease La [Bacillus thuringiensis BMB171]
          Length = 556

 Score = 76.7 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 56/289 (19%), Positives = 100/289 (34%), Gaps = 57/289 (19%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           R +S  +     +RP T  +  GQ +   +LK     A        HV+  GPPG+GKT 
Sbjct: 51  REISLTEPLAEKVRPTTFLDIVGQEDGIKSLK-----AALCGPNPQHVIIYGPPGVGKTA 105

Query: 70  LAQVVARELGVNFRSTS----------------------GPVIAKAGD------------ 95
            A++V  E   N +S                         P+I    D            
Sbjct: 106 AARLVLEEAKRNPKSPFRTNATFIELDATTARFDERGIADPLIGSVHDPIYQGAGAMGQA 165

Query: 96  -----LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL----MVGEGPSARS 146
                    +T+     +LFIDEI  L  I    +   +ED ++ L       E     +
Sbjct: 166 GIPQPKKGAVTDAHGG-ILFIDEIGELHPIQMNKMLKVLEDRKVFLESAYYSEENTMIPT 224

Query: 147 VKINL------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
              ++      + F L+ ATTR      P      + +     + E+++ + +  A+   
Sbjct: 225 YIHDIFQKGLPADFRLVGATTRSPEEIPPAIRSRCLEVFFRELDTEEIQKVAKNAAEKVE 284

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
           + + +     I M +R   R A  L++     A +   ++  ++     
Sbjct: 285 MQIGENGIEMIGMYARN-GREAINLVQISAGMA-INEERSFIKDEDIEW 331


>gi|229048188|ref|ZP_04193757.1| ATP-dependent protease La [Bacillus cereus AH676]
 gi|228723175|gb|EEL74551.1| ATP-dependent protease La [Bacillus cereus AH676]
          Length = 556

 Score = 76.7 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 56/289 (19%), Positives = 100/289 (34%), Gaps = 57/289 (19%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           R +S  +     +RP T  +  GQ +   +LK     A        HV+  GPPG+GKT 
Sbjct: 51  REISLTEPLAEKVRPTTFLDIVGQEDGIKSLK-----AALCGPNPQHVIIYGPPGVGKTA 105

Query: 70  LAQVVARELGVNFRSTS----------------------GPVIAKAGD------------ 95
            A++V  E   N +S                         P+I    D            
Sbjct: 106 AARLVLEEAKRNPKSPFRTNATFIELDATTARFDERGIADPLIGSVHDPIYQGAGAMGQA 165

Query: 96  -----LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL----MVGEGPSARS 146
                    +T+     +LFIDEI  L  I    +   +ED ++ L       E     +
Sbjct: 166 GIPQPKKGAVTDAHGG-ILFIDEIGELHPIQMNKMLKVLEDRKVFLESAYYSEENTMIPT 224

Query: 147 VKINL------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
              ++      + F L+ ATTR      P      + +     + E+++ + +  A+   
Sbjct: 225 YIHDIFQKGLPADFRLVGATTRSPEEIPPAIRSRCLEVFFRELDTEEIQKVAKNAAEKVE 284

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
           + + +     I M +R   R A  L++     A +   ++  ++     
Sbjct: 285 MQIGENGIEMIGMYARN-GREAINLVQISAGMA-INEERSFIKDEDIEW 331


>gi|229180747|ref|ZP_04308085.1| ATP-dependent protease La [Bacillus cereus 172560W]
 gi|229192683|ref|ZP_04319642.1| ATP-dependent protease La [Bacillus cereus ATCC 10876]
 gi|228590773|gb|EEK48633.1| ATP-dependent protease La [Bacillus cereus ATCC 10876]
 gi|228602725|gb|EEK60208.1| ATP-dependent protease La [Bacillus cereus 172560W]
          Length = 556

 Score = 76.7 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 56/289 (19%), Positives = 100/289 (34%), Gaps = 57/289 (19%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           R +S  +     +RP T  +  GQ +   +LK     A        HV+  GPPG+GKT 
Sbjct: 51  REISLTEPLAEKVRPTTFLDIVGQEDGIKSLK-----AALCGPNPQHVIIYGPPGVGKTA 105

Query: 70  LAQVVARELGVNFRSTS----------------------GPVIAKAGD------------ 95
            A++V  E   N +S                         P+I    D            
Sbjct: 106 AARLVLEEAKRNPKSPFRTNATFIELDATTARFDERGIADPLIGSVHDPIYQGAGAMGQA 165

Query: 96  -----LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL----MVGEGPSARS 146
                    +T+     +LFIDEI  L  I    +   +ED ++ L       E     +
Sbjct: 166 GIPQPKKGAVTDAHGG-ILFIDEIGELHPIQMNKMLKVLEDRKVFLESAYYSEENTMIPT 224

Query: 147 VKINL------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
              ++      + F L+ ATTR      P      + +     + E+++ + +  A+   
Sbjct: 225 YIHDIFQKGLPADFRLVGATTRSPEEIPPAIRSRCLEVFFRELDTEEIQKVAKNAAEKVE 284

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
           + + +     I M +R   R A  L++     A +   ++  ++     
Sbjct: 285 MQIGENGIEMIGMYARN-GREAINLVQISAGMA-INEERSFIKDEDIEW 331


>gi|302332191|gb|ADL22384.1| DNA-directed DNA polymerase III gamma and tau subunits
           [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 565

 Score = 76.7 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 52/258 (20%), Positives = 95/258 (36%), Gaps = 25/258 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RP++ E+  GQ      L+  I   K         +F GP G GKT++A+V A+
Sbjct: 5   ALYRMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAY----IFSGPRGTGKTSIAKVFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +     +   P       +   +T   + DV+ ID      +  +  I +++ Y   E 
Sbjct: 61  AINCLNSTDGEPCNEC--HICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSES 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++   +    I ATT    +   +  R         
Sbjct: 119 KYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISR-AQRFDFKA 177

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE----VAHA 238
             ++ +   ++  A    +   DEA   IA  S G  R A  ++ +   F +    +  A
Sbjct: 178 ISLDQIVERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIMDQAIAFGDGTLTLQDA 237

Query: 239 KTITREIADAALLRLAID 256
             +T  + D AL  L  D
Sbjct: 238 LNVTGSVHDEALNHLFDD 255


>gi|325954389|ref|YP_004238049.1| DNA polymerase III subunits gamma and tau [Weeksella virosa DSM
           16922]
 gi|323437007|gb|ADX67471.1| DNA polymerase III, subunits gamma and tau [Weeksella virosa DSM
           16922]
          Length = 363

 Score = 76.7 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 52/232 (22%), Positives = 86/232 (37%), Gaps = 41/232 (17%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP   E+  GQ    S L+  IE+     +    +LF GP G+GKTT A+++AR++
Sbjct: 8   ARKYRPLEFEDVVGQEAITSTLQHAIES----HQLPQALLFCGPRGVGKTTCARILARKI 63

Query: 79  G------------VNFRSTSGPVIAKAGDLAALLT------NLEDRDVLFIDEIHRLSII 120
                         N             D+ +L+        +    V  IDE+H LS  
Sbjct: 64  NEENGGGDGQDFAFNIFELDAASNNSVDDIRSLIEQVRIIPQVGKYRVYIIDEVHMLSTA 123

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                   +E+          P A ++ I         ATT    +   +  R  I    
Sbjct: 124 AFNAFLKTLEE----------PPAHAIFIL--------ATTEKHKIIPTILSRCQIYDFK 165

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
               +ED+K  ++  A+   +   D+A   IA ++ G  R +  +  R+  F
Sbjct: 166 RI-SVEDIKNHLKVVAEKEKVQYEDDALHLIAQKADGALRDSLSIFDRMVTF 216


>gi|315607781|ref|ZP_07882774.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella buccae ATCC
           33574]
 gi|315250250|gb|EFU30246.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella buccae ATCC
           33574]
          Length = 615

 Score = 76.7 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 82/230 (35%), Gaps = 20/230 (8%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP + +   GQ    + LK  +++ K         LF GP G+GKTT A++ A+ +
Sbjct: 7   ARKYRPMSFDSVVGQSALTTTLKNAVKSGKLAHAY----LFCGPRGVGKTTCARIFAKAI 62

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI------IVEEILYPAMEDF 132
                   G    +     A        ++  +D     S+      + +  + P +  +
Sbjct: 63  NCEHPHDDGEACNECESCKA-FNEQRSYNIFELDAASNNSVENIKALMEQTRIPPQVGRY 121

Query: 133 QLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           ++ ++               ++++   +    + ATT    +   +  R  I        
Sbjct: 122 KVFIIDEVHMLSTAAFNAFLKTLEEPPAHVIFVLATTEKHKILPTILSRCQIYDFERM-T 180

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
           + +    ++  A   G+   ++A   IA ++ G  R A  +  +   F +
Sbjct: 181 VPNTIAHLKMVADKEGITYDEQALEVIAEKADGGMRDALSIFDQAASFCQ 230


>gi|296126216|ref|YP_003633468.1| DNA polymerase III, subunits gamma and tau [Brachyspira murdochii
           DSM 12563]
 gi|296018032|gb|ADG71269.1| DNA polymerase III, subunits gamma and tau [Brachyspira murdochii
           DSM 12563]
          Length = 520

 Score = 76.7 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 88/249 (35%), Gaps = 53/249 (21%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+T EE  GQ          I  + A+ +     LF G  G+GKT+LA+++A+ L
Sbjct: 9   ARKYRPQTFEEVIGQEHITKT----ISKSIAQKKIAHAYLFSGAHGVGKTSLARIIAKAL 64

Query: 79  GV------------------------NFRSTSGPVIAKAGDLAALLTN------LEDRDV 108
                                     +     G       ++ +++ N           V
Sbjct: 65  NCVNGPTDKPCGVCPSCTQIENGTPLDVIEIDGASNRGIENIRSIIENVRISPVAGKYKV 124

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
             IDE+H+++      L   +E+          P A  V I         ATT    +  
Sbjct: 125 YIIDEVHQITNEAFNALLKTLEE----------PPAHVVFIL--------ATTEADRVLP 166

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            ++ R           IEDL+ I++       +   +EA   IA ++RG+ R +  +L +
Sbjct: 167 TIRSRCQ-QYTFKSLGIEDLEKILKGILDKENIKYDEEAIFLIAKQARGSVRDSETILEK 225

Query: 229 VRDFAEVAH 237
           +  +     
Sbjct: 226 MIAYTTDKK 234


>gi|154151216|ref|YP_001404834.1| replication factor C small subunit [Candidatus Methanoregula boonei
           6A8]
 gi|166225154|sp|A7I8Y0|RFCS_METB6 RecName: Full=Replication factor C small subunit; Short=RFC small
           subunit; AltName: Full=Clamp loader small subunit
 gi|153999768|gb|ABS56191.1| Replication factor C [Methanoregula boonei 6A8]
          Length = 322

 Score = 76.7 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 79/223 (35%), Gaps = 37/223 (16%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
            I   RP  L +  GQ +    L  ++++       L H+LF G  G+GKTT A  +ARE
Sbjct: 8   WIEKYRPAKLADIVGQDDIVERLSSYVKSG-----NLPHLLFTGSAGVGKTTAAVTLARE 62

Query: 78  -----LGVNFRSTSGPVIAKAGDLAALLTNLED--------RDVLFIDEIHRLSIIVEEI 124
                  +NFR  +         +   +               +LF+DE   L+   +  
Sbjct: 63  FFGDSWQMNFRELNASDERGIDVVRNQIKEFARTRPAGDAAFKILFLDEADALTTDAQAA 122

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           L   ME +                        I +      + +P+Q R  I  R     
Sbjct: 123 LRRTMESYAKT------------------CRFILSCNYSSKIIDPIQSRCAI-YRFRPLG 163

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
            + +K  + R A    L VT EA   +   ++G  R A   L+
Sbjct: 164 PQAVKEEITRIAAREHLDVTPEAMDAMVYIAQGDMRKAINALQ 206


>gi|228923224|ref|ZP_04086514.1| ATP-dependent protease La [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228836430|gb|EEM81781.1| ATP-dependent protease La [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 556

 Score = 76.7 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 56/289 (19%), Positives = 100/289 (34%), Gaps = 57/289 (19%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           R +S  +     +RP T  +  GQ +   +LK     A        HV+  GPPG+GKT 
Sbjct: 51  REISLTEPLAEKVRPTTFLDIVGQEDGIKSLK-----AALCGPNPQHVIIYGPPGVGKTA 105

Query: 70  LAQVVARELGVNFRSTS----------------------GPVIAKAGD------------ 95
            A++V  E   N +S                         P+I    D            
Sbjct: 106 AARLVLEEAKRNPKSPFRTNATFIELDATTARFDERGIADPLIGSVHDPIYQGAGAMGQA 165

Query: 96  -----LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL----MVGEGPSARS 146
                    +T+     +LFIDEI  L  I    +   +ED ++ L       E     +
Sbjct: 166 GIPQPKKGAVTDAHGG-ILFIDEIGELHPIQMNKMLKVLEDRKVFLESAYYSEENTMIPT 224

Query: 147 VKINL------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
              ++      + F L+ ATTR      P      + +     + E+++ + +  A+   
Sbjct: 225 YIHDIFQKGLPADFRLVGATTRSPEEIPPAIRSRCLEVFFRELDTEEIQKVAKNAAEKVE 284

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
           + + +     I M +R   R A  L++     A +   ++  ++     
Sbjct: 285 MQIGENGIEMIGMYARN-GREAINLVQISAGMA-INEERSFIKDEDIEW 331


>gi|26553595|ref|NP_757529.1| recombination factor protein RarA [Mycoplasma penetrans HF-2]
 gi|26453601|dbj|BAC43933.1| predicted ATPase [Mycoplasma penetrans HF-2]
          Length = 409

 Score = 76.7 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 53/312 (16%), Positives = 108/312 (34%), Gaps = 54/312 (17%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRST 85
           + +E   +        + I   +     L  +LF G PG+GK+   Q + ++L  NF   
Sbjct: 13  SFDEMICKDVIFPKDSIIINMIE--NNDLFSILFFGNPGVGKSASIQFILKKLNKNFYYF 70

Query: 86  SGPVIAKAGDLAALLTNL--EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEG 141
           +     K  DL  +L     +++ ++ I+EIHRL+   +++L   +E   + ++    E 
Sbjct: 71  NSTTNNK-NDLLEILELATEDNKPIIIIEEIHRLNKDKQDLLLMYLEKDMIIVLATTTEN 129

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
           P  +      SR  L         +                     LK  V +  +   +
Sbjct: 130 PFFKVNPAIRSRLLLYRIENINSAV---------------------LKEEVIKYLENKKV 168

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            ++++    I   S+   R     L+ V  + +      + +E+         ID+   +
Sbjct: 169 KLSNKVVEAIVEISKSDFRQIFFYLKIVLKYYQNKSDDIVLKELGKITNSL--IDRRATN 226

Query: 262 QLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ---GFIQRTPRGRL 318
             DL                   +SA     R +  +    Y+ Q    G +      R 
Sbjct: 227 HYDL-------------------LSAFHKSIRGSDPNAAVYYLAQLLESGDLISVY--RR 265

Query: 319 LMPIAWQHLGID 330
           L  + ++ +G+ 
Sbjct: 266 LYAVVYEDIGLA 277


>gi|151945136|gb|EDN63387.1| replication factor C subunit 2 [Saccharomyces cerevisiae YJM789]
 gi|256273083|gb|EEU08038.1| Rfc2p [Saccharomyces cerevisiae JAY291]
 gi|259147531|emb|CAY80782.1| Rfc2p [Saccharomyces cerevisiae EC1118]
 gi|323336956|gb|EGA78213.1| Rfc2p [Saccharomyces cerevisiae Vin13]
 gi|323347871|gb|EGA82132.1| Rfc2p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 353

 Score = 76.7 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 44/258 (17%), Positives = 81/258 (31%), Gaps = 48/258 (18%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L +     +   +   RP+ L+E T Q  A + LK  +++A      L H+LF GPPG G
Sbjct: 16  LAAEQSLAQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSA-----NLPHMLFYGPPGTG 70

Query: 67  KTTLAQVVARE------LGVNFRSTSGPVIAKAGDLAALLTNLEDRD------------- 107
           KT+    + +E      +       +         +   + N                  
Sbjct: 71  KTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYP 130

Query: 108 -----VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTR 162
                ++ +DE   ++   +  L   ME +                  ++RF        
Sbjct: 131 CPPYKIIILDEADSMTADAQSALRRTMETYS----------------GVTRF--CLICNY 172

Query: 163 VGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
           V  + +PL  R     R    +  +    ++  ++   +   D     I   S G  R  
Sbjct: 173 VTRIIDPLASRCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRG 231

Query: 223 GRLLRRVRDFAEVAHAKT 240
             LL+     A+      
Sbjct: 232 ITLLQSASKRAQYLGDGK 249


>gi|86143111|ref|ZP_01061533.1| putative DNA polymerase III [Leeuwenhoekiella blandensis MED217]
 gi|85830556|gb|EAQ49015.1| putative DNA polymerase III [Leeuwenhoekiella blandensis MED217]
          Length = 391

 Score = 76.7 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 84/249 (33%), Gaps = 43/249 (17%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T ++  GQ    + L    E A A       +LF GP G+GKTT A+++A+++
Sbjct: 36  ARKYRPATFKDVVGQQAITNTL----ENAIANNHLAQALLFTGPRGVGKTTCARILAKKI 91

Query: 79  G--------------VNFRSTSGPVIAKAGDLAALLT------NLEDRDVLFIDEIHRLS 118
                           N             D+  L+        + +  V  IDE+H LS
Sbjct: 92  NQEADEVVDENEDYAFNIFELDAASNNSVDDIRNLIDQVRIAPQVGNYKVYIIDEVHMLS 151

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
                     +E+                         I ATT    +   +  R  I  
Sbjct: 152 SAAFNAFLKTLEE------------------PPKHAIFILATTEKHKILPTILSRCQIFD 193

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
                 ++D++  +   AK  G+   +EA   IA ++ G  R A     RV  F+     
Sbjct: 194 FKRI-TVKDIREHLVDIAKQEGITADEEALHIIAQKADGALRDALSTFDRVVSFSGENLT 252

Query: 239 KTITREIAD 247
           +    E  +
Sbjct: 253 RAAVTENLN 261


>gi|303228652|ref|ZP_07315477.1| DNA polymerase III, subunit gamma and tau [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302516632|gb|EFL58549.1| DNA polymerase III, subunit gamma and tau [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 804

 Score = 76.7 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 66/296 (22%), Positives = 109/296 (36%), Gaps = 41/296 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP+T  +  GQ +    L   I   K         LF GP G GKT++A++ AR
Sbjct: 5   ALYRKYRPQTFTDVVGQHQVSDTLMRAIREDKVAHAY----LFAGPRGTGKTSMAKIFAR 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR--DVLFID-----EIHRLSIIVEEILYPAM 129
            +        GP      + +   + L  +  DVL ID      I  +  + E + +  +
Sbjct: 61  AINCEH----GPTDHPCNECSVCKSILSGQSMDVLEIDAASNRGIDEIRALRESVKFMPV 116

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           E  +   ++ E             ++++        I ATT +  L   +  R       
Sbjct: 117 EGRKKVFIIDEAHMLTNEAWNALLKTIEEPPDHVMFIFATTEIEKLPVTIVSRCQRYTFR 176

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
                +D+   +Q  A   G A+ D AA  IA+ + G  R A  +L +    A       
Sbjct: 177 RI-TSDDIAQRLQYVADKEGFALEDNAARLIAVHADGGLRDALSILDQCVGMASGEITPA 235

Query: 241 ITREIADAALLRLAIDKMGFDQLD--LRYLTMIARNFGGGPVGIETISAGLSEPRD 294
           +  E+             G    D  +++L+ +    G GP  ++ I   LSE RD
Sbjct: 236 VVEELI------------GLVSKDWIIKFLSALHN--GDGPAVLKYIQNALSEGRD 277


>gi|261403496|ref|YP_003247720.1| AAA ATPase central domain protein [Methanocaldococcus vulcanius M7]
 gi|261370489|gb|ACX73238.1| AAA ATPase central domain protein [Methanocaldococcus vulcanius M7]
          Length = 509

 Score = 76.7 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 42/209 (20%), Positives = 84/209 (40%), Gaps = 22/209 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           + +   RPR+L++  G  +    LK +IE +  + E    +L VGPPG GKTTLA  +A 
Sbjct: 3   SWVEKYRPRSLKDVAGHEKVKEKLKTWIE-SYLKGENPKPILLVGPPGCGKTTLAYALAN 61

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVE-----EI 124
           + G      +      +  +  ++ +          + ++ +DE+  +S   +     E+
Sbjct: 62  DYGFEVIELNASDKRNSSAIKKVVGHAATSSSIFGKKFLIVLDEVDGISGKEDAGGVSEL 121

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA----TTRVGLLTNPLQDRFGIPIRL 180
           +    +     ++      A S++  L    +I      T  +  +   +  + G+ +  
Sbjct: 122 IKIIKKAKNPIILTANDAYATSIRSLLPYVEIIQLNPVHTNSIYKVLKKIAQKEGLDV-- 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAAC 209
              + + LK I Q  A     A+ D  A 
Sbjct: 180 ---DDKTLKMIAQHSAGDLRSAINDLEAL 205


>gi|301114403|ref|XP_002998971.1| replication factor C subunit 5 [Phytophthora infestans T30-4]
 gi|262111065|gb|EEY69117.1| replication factor C subunit 5 [Phytophthora infestans T30-4]
          Length = 353

 Score = 76.7 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 51/248 (20%), Positives = 83/248 (33%), Gaps = 38/248 (15%)

Query: 5   EGLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           EG+ SRN S E    +   RP +L++     E  S L   I+A K     L H+LF GPP
Sbjct: 16  EGISSRNRSTESWPWVEKYRPSSLDDLIAHQEIISTLNRLIDAQK-----LPHLLFYGPP 70

Query: 64  GLGKTTLAQVVAR------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-DVLF 110
           G GKT++    AR            EL  +       V  +  + A           ++ 
Sbjct: 71  GTGKTSMIIAAARRLYGKNYGSMVLELNASDDRGIDVVRNQIKEFAGTKKLFSQGVKLII 130

Query: 111 IDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           +DE   ++   +  L   +E +                              V  +   L
Sbjct: 131 LDEADSMTNDAQFSLRRVIEKYT------------------KNARFCLICNYVSKIIPAL 172

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
           Q R     R        +   V+  A+L  L +T++    I    +G  R    +L+   
Sbjct: 173 QSRC-TRFRFAPLNESQVSGRVKHIAQLEKLNMTEDGFKAILRLGQGDMRRILNILQATS 231

Query: 231 DFAEVAHA 238
              ++   
Sbjct: 232 MAHDIVDE 239


>gi|322368069|ref|ZP_08042638.1| replication factor C small subunit [Haladaptatus paucihalophilus
           DX253]
 gi|320552085|gb|EFW93730.1| replication factor C small subunit [Haladaptatus paucihalophilus
           DX253]
          Length = 325

 Score = 76.7 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 54/281 (19%), Positives = 97/281 (34%), Gaps = 42/281 (14%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
            +   RP+TL++  G  +  + LK +IE        L ++LF G  G+GKTT A  +A+E
Sbjct: 16  WVEKYRPQTLDDVAGHDDITARLKSYIE-----RNDLPNLLFSGQAGIGKTTCAVAIAKE 70

Query: 78  -----LGVNFRSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLSIIVEEIL 125
                   +F   +         +   + N    D       ++F+DE   L+   +  L
Sbjct: 71  LYGDSWQSHFLELNASDERGIDVVRDQIKNFARHDPGAVDFQIIFLDEADSLTSDAQAAL 130

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
              ME F                 + +RF +  +      + +P+Q R  +  R      
Sbjct: 131 RRTMEQFS----------------DKTRFIM--SCNYSSKIIDPIQSRCAV-FRFGPIPD 171

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT----I 241
           + +   VQ  A   G+  TD+    +   + G  R A   L+      E    ++     
Sbjct: 172 DAVAGYVQYVADEEGIETTDDGIEALVYAADGDMRKAINALQAAAVMGEQVDEESVFVIT 231

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIA--RNFGGGPV 280
           +    +     +     G        L  +   R   GG +
Sbjct: 232 STARPEDIKEMVRHAIDGDFTRSRSILDELLTERGMAGGDI 272


>gi|294496893|ref|YP_003560593.1| DNA polymerase III subunits gamma and tau [Bacillus megaterium QM
           B1551]
 gi|294346830|gb|ADE67159.1| DNA polymerase III, subunits gamma and tau [Bacillus megaterium QM
           B1551]
          Length = 562

 Score = 76.7 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 48/237 (20%), Positives = 87/237 (36%), Gaps = 27/237 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A   + RP++  +  GQ      L+  +       E   H  LF GP G GKTT A+++A
Sbjct: 5   ALYRVYRPQSFNDVVGQQHIIKTLQNAL-----VQEKFSHAYLFSGPRGTGKTTAAKILA 59

Query: 76  RELGVNFRSTSGPVIAKAGDLAAL--LTNLEDRDVLFID-----EIHRLSIIVEEILYPA 128
           + +         P+     + A    +T+    DV+ ID      +  +  I +++ Y  
Sbjct: 60  KAVNCEK----APIAEPCNECATCRGITDGSISDVIEIDAASNNGVDEIRDIRDKVKYAP 115

Query: 129 MEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
                   ++ E             ++++   +    I ATT    +   +  R      
Sbjct: 116 SAVRYKVYIIDEVHMLSIGAFNALLKTLEEPPAHVIFILATTEPHKIPLTIISRCQ-RFD 174

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
                 ED+   ++       L V+++A  EIA  S G  R A  LL +   ++   
Sbjct: 175 FKRISPEDIVYRMKEVLGSEELEVSEDALYEIAKASEGGMRDALSLLDQAISYSTEK 231


>gi|269792441|ref|YP_003317345.1| DNA polymerase III, subunits gamma and tau [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100076|gb|ACZ19063.1| DNA polymerase III, subunits gamma and tau [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 580

 Score = 76.7 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 52/285 (18%), Positives = 101/285 (35%), Gaps = 30/285 (10%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
              RP    E +GQ      L   + + +         LF GP G GKT+ A+++A+ L 
Sbjct: 7   RKYRPSRFSEISGQRGVVEALVGSLRSGR----IPHAFLFSGPRGCGKTSAARLLAKRLN 62

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHR-----LSIIVEEILYPAMEDFQL 134
               +  G       +  A+       DV+ ID         +  + +++     +    
Sbjct: 63  CASPAEDGESCGTCVNCEAIQRG-GHLDVVEIDGASNRGIEEIRSLKDQVALAPFQAPNK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             ++ E             ++++   SR   + ATT    +   ++ R  +         
Sbjct: 122 VYIIDEVHMLTEAAFNALLKTLEEPPSRVYFVLATTEPQKVPVTIRSRC-VHFPFQRIST 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           ED+K  +    ++ G+   D+A  E+A  + G  R A  LL +    A       +T   
Sbjct: 181 EDIKDRISHVVQMEGIEAEDQALWELARSADGALRDALSLLEQ----AISVGGGMVTTAA 236

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
            +  L   + + +       R++  +  +  G   G+  I  G S
Sbjct: 237 MEGILGGFSRESL------QRWVRQLREDPPGAFQGLAQIVRGGS 275


>gi|225011952|ref|ZP_03702390.1| DNA polymerase III, subunits gamma and tau [Flavobacteria bacterium
           MS024-2A]
 gi|225004455|gb|EEG42427.1| DNA polymerase III, subunits gamma and tau [Flavobacteria bacterium
           MS024-2A]
          Length = 358

 Score = 76.7 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 46/242 (19%), Positives = 85/242 (35%), Gaps = 40/242 (16%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP + EE  GQ      L+  +++ +        +LF GP G+GKT+ A+++A+++    
Sbjct: 12  RPTSFEEVVGQESITKTLQNSLDSNQLAQA----LLFCGPRGVGKTSCARILAKKINSAT 67

Query: 83  RSTSG-----------------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
            +  G                   I K  D   +   +    +  IDE H LS       
Sbjct: 68  TAEDGDYSFNIFELDAASNNSVEDIRKINDQVRIPPQVGSHKIYIIDEAHMLSANAFNAF 127

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
              +E+                         I ATT    +   +  R  +        +
Sbjct: 128 LKTLEE------------------PPKHVIFILATTEKNKIIPTVLSRCQVYDFKRI-AV 168

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           +D++  +++ A   GL   + A   IA ++ G  R A  +  R+  F +   +     E 
Sbjct: 169 QDIQKYLEKIAIDRGLVFEENALYLIAQKAEGALRDALSIFDRMVSFTQGNLSAVAVAEN 228

Query: 246 AD 247
            +
Sbjct: 229 LN 230


>gi|297209025|ref|ZP_06925425.1| DNA polymerase III, gamma/tau subunit DnaX [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|296886296|gb|EFH25229.1| DNA polymerase III, gamma/tau subunit DnaX [Staphylococcus aureus
           subsp. aureus ATCC 51811]
          Length = 565

 Score = 76.7 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 52/262 (19%), Positives = 91/262 (34%), Gaps = 29/262 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RP++ E+  GQ      L+  I   K         +F GP G GKT++A+V A+
Sbjct: 5   ALYRMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAY----IFSGPRGTGKTSIAKVFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +     +   P       +   +T   + DV+ ID      +  +  I +++ Y   E 
Sbjct: 61  AINCLNSTDGEPCNEC--HICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSES 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++   +    I ATT    +   +  R         
Sbjct: 119 KYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISR-AQRFDFKA 177

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
             +  +   ++  A    +   DEA   IA  S G  R A  ++    D A      T+T
Sbjct: 178 ISLNQIVERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIM----DQAIAFGDGTLT 233

Query: 243 REIADAALLRLA-IDKMGFDQL 263
                 AL     +     D L
Sbjct: 234 L---QDALNVTGSVHDEALDHL 252


>gi|253680998|ref|ZP_04861801.1| ATP-dependent protease LonB [Clostridium botulinum D str. 1873]
 gi|253562847|gb|EES92293.1| ATP-dependent protease LonB [Clostridium botulinum D str. 1873]
          Length = 564

 Score = 76.7 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 61/275 (22%), Positives = 94/275 (34%), Gaps = 56/275 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV---ARELG 79
           RP++ +E  GQ +    L+  I           HV+  GPPG+GKT  A+VV   A+   
Sbjct: 63  RPKSFKEIIGQEKGLKALEAAI-----CGPNPQHVIIYGPPGVGKTAAARVVLENAKNKE 117

Query: 80  VNFRSTSG---------------------------PVIAKAGDLA---------ALLTNL 103
            +  + +                            P+   AG L            +T  
Sbjct: 118 YSPFNKNAKFVEIDATTVRFDDRGIADPLIGSVHDPIYQGAGALGSAGIPQPKPGAVTKA 177

Query: 104 EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL----MVGEGPSARSVKINL------SR 153
               +LFIDEI  L  +    L   MED ++ L       E P+  S   ++      + 
Sbjct: 178 HGG-ILFIDEIGELHPVETNKLLKVMEDRKVFLESAYYNSEDPNMPSYIKDIFDNGLPAD 236

Query: 154 FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAM 213
           F L+ ATTR      P      + I       E+++ I     K  G  + D+A   +  
Sbjct: 237 FRLVGATTRSPQEMCPAIRSRCVEIFFRSLTAEEIEDIADNTIKKIGFTIEDKAKVLVGK 296

Query: 214 RSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
                 R A  L++     A     K I  E  + 
Sbjct: 297 YCTN-GRDAVSLVQLSSGIALNEGRKKIKVEDMEW 330


>gi|147677141|ref|YP_001211356.1| ATP-dependent protease [Pelotomaculum thermopropionicum SI]
 gi|146273238|dbj|BAF58987.1| predicted ATP-dependent protease [Pelotomaculum thermopropionicum
           SI]
          Length = 573

 Score = 76.7 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 59/288 (20%), Positives = 98/288 (34%), Gaps = 56/288 (19%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           R++S  +      RP + +E  GQ E   +L+     A        HV+  GPPG+GKT 
Sbjct: 56  RSISLTEPLSEKTRPASFDEIIGQAEGLKSLR-----AALCGPNPQHVIIYGPPGVGKTA 110

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDV--------------------- 108
            A++V  E   N  S      AK  ++ A     ++R +                     
Sbjct: 111 AARLVLEEAKKNPLSPFKG-DAKFIEVDATTARFDERGIADPLIGSVHDPIYQGAGPMGM 169

Query: 109 ------------------LFIDEIHRLSIIVEEILYPAMEDFQLDL----MVGEGPSARS 146
                             LFIDEI  L  I    L   +ED ++ L       E  +  S
Sbjct: 170 AGIPQPKAGAVTKAHGGMLFIDEIGELHPIQMNKLLKVIEDRRVLLESAYYNSEDTNIPS 229

Query: 147 VKINL------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
              ++      + F L+ ATTR  +   P      + I       ++++ I    AK  G
Sbjct: 230 HIHDIFQNGLPADFRLVGATTREPVHIPPALRSRCLEIFFRRLTPDEIEQIAANAAKKIG 289

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           + +    A E+  +     R A  +++           + I     + 
Sbjct: 290 MPLQA-GALEVIKKYATNGREAVNIIQIAAGIVITEGREQIRTSDIEW 336


>gi|297564866|ref|YP_003683838.1| DNA polymerase III subunits gamma and tau [Meiothermus silvanus DSM
           9946]
 gi|296849315|gb|ADH62330.1| DNA polymerase III, subunits gamma and tau [Meiothermus silvanus
           DSM 9946]
          Length = 485

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 46/236 (19%), Positives = 71/236 (30%), Gaps = 52/236 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP T +E  GQ      L   I   +         LF GP G+GKT+ A+++A+ +    
Sbjct: 9   RPTTFDEVVGQEHVKEVLLSAIRTGRLAQAY----LFSGPRGVGKTSSARLIAQAVNCIA 64

Query: 83  RST-----------------------SGPVIAKAGDLAALLTN------LEDRDVLFIDE 113
           ++                                 D+  L         L  R V+ +DE
Sbjct: 65  QADKPCGVCEGCRLVREGNHPDVLEIDAASNNSVEDVRELRERILLAPLLGSRKVVILDE 124

Query: 114 IHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
            H +S      L   +E+                         I ATT    +   +  R
Sbjct: 125 AHMMSKSAFNALLKTLEE------------------PPEHVIFIFATTEPERMPPTILSR 166

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
                     E E ++  + R  K         A   +A  + G  R A  LL R+
Sbjct: 167 TQHFRFRRLSEAEIVQK-LSRILKTMDREAEPAALQLVARIADGAMRDAESLLDRL 221


>gi|229163427|ref|ZP_04291378.1| ATP-dependent protease La [Bacillus cereus R309803]
 gi|228619996|gb|EEK76871.1| ATP-dependent protease La [Bacillus cereus R309803]
          Length = 557

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 55/289 (19%), Positives = 100/289 (34%), Gaps = 57/289 (19%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           R +S  +     +RP +  +  GQ +   +LK     A        HV+  GPPG+GKT 
Sbjct: 52  REISLTEPLAEKVRPTSFLDIVGQEDGIKSLK-----AALCGPNPQHVIIYGPPGVGKTA 106

Query: 70  LAQVVARELGVNFRSTS----------------------GPVIAKAGD------------ 95
            A++V  E   N +S                         P+I    D            
Sbjct: 107 AARLVLEEAKRNPKSPFRTNATFIELDATTARFDERGIADPLIGSVHDPIYQGAGAMGQA 166

Query: 96  -----LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL----MVGEGPSARS 146
                    +T+     +LFIDEI  L  I    +   +ED ++ L       E     +
Sbjct: 167 GIPQPKKGAVTDAHGG-ILFIDEIGELHPIQMNKMLKVLEDRKVFLESAYYSEENTMIPT 225

Query: 147 VKINL------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
              ++      + F L+ ATTR      P      + +     + E+++ + +  A+   
Sbjct: 226 YIHDIFQKGLPADFRLVGATTRSPEEIPPAIRSRCLEVFFRELDTEEIQKVAKNAAEKVE 285

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
           + + +     I M +R   R A  L++     A +   ++  ++     
Sbjct: 286 MQIGENGIEMIGMYARN-GREAINLVQISAGMA-INEERSFIKDEDIEW 332


>gi|126466117|ref|YP_001041226.1| replication factor C large subunit [Staphylothermus marinus F1]
 gi|158513389|sp|A3DNV8|RFCL_STAMF RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|126014940|gb|ABN70318.1| replication factor C large subunit [Staphylothermus marinus F1]
          Length = 423

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 79/222 (35%), Gaps = 23/222 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             I   RP+ + +   Q  A      ++E+      +    L  GP G GKT+L +  A 
Sbjct: 6   PWIIKYRPKKIADVVNQDSAKKQFIQWLESWLKGKPSKKAALLYGPAGCGKTSLVEAAAN 65

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAM 129
           E G+     +     +  D+  +               ++ +DE+  +S           
Sbjct: 66  EYGLEIVEMNASDFRRRQDIERIAKTAAFMRSLFARGKIILLDEVDGIS--------GTA 117

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           +   +D ++        ++I      +  A         PL+D   +       E + + 
Sbjct: 118 DRGAIDAIL------HLLEITRYPVVM-TANNPWDQKLKPLRDASLMIAFKRLSERDVII 170

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            +++R  +L  L   D A  EIA RS G  R A   L+ + +
Sbjct: 171 -VLKRICQLEKLECEDAALREIARRSEGDLRSAINDLQAIAE 211


>gi|303231330|ref|ZP_07318065.1| DNA polymerase III, subunit gamma and tau [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302514010|gb|EFL56017.1| DNA polymerase III, subunit gamma and tau [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 763

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 66/296 (22%), Positives = 109/296 (36%), Gaps = 41/296 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP+T  +  GQ +    L   I   K         LF GP G GKT++A++ AR
Sbjct: 5   ALYRKYRPQTFTDVVGQHQVSDTLMRAIREDKVAHAY----LFAGPRGTGKTSMAKIFAR 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR--DVLFID-----EIHRLSIIVEEILYPAM 129
            +        GP      + +   + L  +  DVL ID      I  +  + E + +  +
Sbjct: 61  AINCEH----GPTDHPCNECSVCKSILSGQSMDVLEIDAASNRGIDEIRALRESVKFMPV 116

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           E  +   ++ E             ++++        I ATT +  L   +  R       
Sbjct: 117 EGRKKVFIIDEAHMLTNEAWNALLKTIEEPPDHVMFIFATTEIEKLPVTIVSRCQRYTFR 176

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
                +D+   +Q  A   G A+ D AA  IA+ + G  R A  +L +    A       
Sbjct: 177 RI-TSDDIAQRLQYVADKEGFALEDNAARLIAVHADGGLRDALSILDQCVGMASGEITPA 235

Query: 241 ITREIADAALLRLAIDKMGFDQLD--LRYLTMIARNFGGGPVGIETISAGLSEPRD 294
           +  E+             G    D  +++L+ +    G GP  ++ I   LSE RD
Sbjct: 236 VVEELI------------GLVSKDWIIKFLSALHN--GDGPAVLKYIQNALSEGRD 277


>gi|239630120|ref|ZP_04673151.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|239527732|gb|EEQ66733.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei
           8700:2]
          Length = 566

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 61/295 (20%), Positives = 105/295 (35%), Gaps = 32/295 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  ++  GQ      LK     A    +     LF GP G GKT++A+++A+ L    
Sbjct: 12  RPQQFKDVIGQEAITKTLK----NALITGQTSHAYLFTGPRGTGKTSVAKILAKALNCLH 67

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P      ++   + N    DV+ ID      +  +  I ++  Y   +      +
Sbjct: 68  LEDGEPDNTC--EICQAINNGSLTDVIEIDAASNNGVDEIRDIRDKAKYAPTQARVKVYI 125

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++   +    I ATT    +   +  R            ED+
Sbjct: 126 IDEVHMLSSGAFNALLKTLEEPPAHVVFILATTEPHKIPATIISRTQ-RFDFRRITPEDI 184

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              ++       +   D A   IA  + G  R A  +L +V  F        +T E A  
Sbjct: 185 VKRMRFILDDKQITYDDAALKVIAKAAEGGMRDALSILDQVLSF----GDNHVTTEDALD 240

Query: 249 ALLRLAIDKMGFDQLDLRYLTM-IARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
               +    +G      +YL   +A++       IE + A   +P   IEDLIE 
Sbjct: 241 VTGGVTTAVLG------KYLAAVLAKDHAQALKMIEDLLASGKDPGRLIEDLIEY 289


>gi|150025047|ref|YP_001295873.1| DNA polymerase III subunit [Flavobacterium psychrophilum JIP02/86]
 gi|149771588|emb|CAL43059.1| Probable DNA polymerase III subunit [Flavobacterium psychrophilum
           JIP02/86]
          Length = 361

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 78/233 (33%), Gaps = 41/233 (17%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+T ++  GQ    + L   IE           +LF GP G+GKTT A+++AR++
Sbjct: 8   ARKYRPQTFKDVVGQQAITNTLLNAIET----NHLASALLFTGPRGVGKTTCARILARKI 63

Query: 79  G------------VNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSII 120
                         N             D+  L+  +          V  IDE+H LS  
Sbjct: 64  NQPGYDDPNEDFAFNVFELDAASNNSVDDIRNLIDQVRIPPQTGQYKVYIIDEVHMLSSA 123

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                   +E+                         I ATT    +   +  R  I    
Sbjct: 124 AFNAFLKTLEE------------------PPKHAIFILATTEKHKIIPTILSRCQIFDFK 165

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
               ++D K  +   A   G+   D+A   IA ++ G  R A  +  RV  F 
Sbjct: 166 RI-TVKDAKEHLAEVATNQGVIFEDDALHIIAQKADGAMRDALSIFDRVVSFC 217


>gi|56961819|ref|YP_173541.1| DNA-directed DNA polymerase III gamma and tau DnaX [Bacillus
           clausii KSM-K16]
 gi|56908053|dbj|BAD62580.1| DNA-directed DNA polymerase III gamma and tau DnaX [Bacillus
           clausii KSM-K16]
          Length = 560

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 58/275 (21%), Positives = 96/275 (34%), Gaps = 29/275 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+ LE+  GQ      LK     A  + +     LF GP G GKT+ A++VA+ +    
Sbjct: 11  RPQLLEDVVGQSHITKTLK----NALLQQKLAHAYLFSGPRGTGKTSAAKIVAKAINCK- 65

Query: 83  RSTSGPVIAKAGDLAAL--LTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLD 135
                PV     +  A   +TN    DV+ ID      +  +  I +++ +   E     
Sbjct: 66  ---QAPVAEPCNECDACVGITNGSVVDVIEIDAASNNGVDEIRDIRDKVKFAPSEVAYKV 122

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             ++++   +    I ATT    +   +  R            E
Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPLTILSRCQ-RFDFKPISNE 181

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
            L   ++           +EA   IA  + G  R A  LL +   F++     T      
Sbjct: 182 ALINRMKFILDNNQQPYEEEAIELIARAADGGARDALSLLDQAISFSDEK-VSTEDVLTI 240

Query: 247 DAALLRLAIDKMG---FDQLDLRYLTMIARNFGGG 278
             A+ R A+ ++      Q     L  I     GG
Sbjct: 241 TGAVSREALHQLAAALEKQNARLVLETIDETLKGG 275


>gi|50304409|ref|XP_452154.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49641286|emb|CAH02547.1| KLLA0B13992p [Kluyveromyces lactis]
          Length = 352

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 48/247 (19%), Positives = 81/247 (32%), Gaps = 13/247 (5%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           S    Q    +   RPR L++   Q  A + LK  ++ A      L H+LF GPPG GKT
Sbjct: 15  SDGKGQAKPWVEKYRPRKLDDVAAQDHAVTVLKRTLQTA-----NLPHMLFYGPPGTGKT 69

Query: 69  TLAQVVARE------LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           +    + +E              +         +   + N     V    E    +    
Sbjct: 70  STILALTKELYGPHLSNSRVLELNASDERGISIVREKVKNFARLTVSKPSESDLANYPCP 129

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                 +++        +    R+++              V  + +PL  R     R   
Sbjct: 130 PYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCS-KFRFKA 188

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR-RVRDFAEVAHAKTI 241
            +  +  + +Q  A    L   D     I   S+G  R A  LL+   +   +   A TI
Sbjct: 189 LDSSNALSRLQFIANEESLKYEDGVLERILDISQGDLRKAITLLQSAAKIVLQNDDANTI 248

Query: 242 TREIADA 248
           T + A+ 
Sbjct: 249 TLKHANE 255


>gi|284034966|ref|YP_003384896.1| DNA polymerase III subunits gamma and tau [Spirosoma linguale DSM
           74]
 gi|283814259|gb|ADB36097.1| DNA polymerase III, subunits gamma and tau [Spirosoma linguale DSM
           74]
          Length = 664

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 47/254 (18%), Positives = 80/254 (31%), Gaps = 20/254 (7%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T +   GQ    + LK  I             LF GP G+GKTT A+++A+ +
Sbjct: 8   ARKYRPATFDTVVGQEHITTTLKNAI----KTNHLASAFLFCGPRGVGKTTCARILAKTI 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL-----YPAMEDFQ 133
                +  G          +   N     +  +D     S+     L     YP      
Sbjct: 64  NCQNLTAEGEACDACESCVSFNQNASFN-IHELDAASNNSVEDIRNLIDQVRYPPQSGKY 122

Query: 134 LDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
              ++ E             ++++   +    I ATT    +   +  R  I    N  +
Sbjct: 123 KIYIIDEVHMLSSAAFNAFLKTLEEPPTYAIFILATTEKHKILPTILSRCQI-FDFNRIQ 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            + +   +   A+  G+    EA   IA ++ G  R A  +      FA     +     
Sbjct: 182 PQHIANHLAGIAQKEGITAETEALDLIAQKADGGLRDALSMFDLNVTFAADRIIRYKEVL 241

Query: 245 IADAALLRLAIDKM 258
                L      K+
Sbjct: 242 DNLHILDYDYYFKL 255


>gi|301067270|ref|YP_003789293.1| DNA polymerase III subunit gamma/tau [Lactobacillus casei str.
           Zhang]
 gi|300439677|gb|ADK19443.1| DNA polymerase III, gamma/tau subunit [Lactobacillus casei str.
           Zhang]
          Length = 565

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 61/295 (20%), Positives = 105/295 (35%), Gaps = 32/295 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  ++  GQ      LK     A    +     LF GP G GKT++A+++A+ L    
Sbjct: 11  RPQQFKDVIGQEAITKTLK----NALITGQTSHAYLFTGPRGTGKTSVAKILAKALNCLH 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P      ++   + N    DV+ ID      +  +  I ++  Y   +      +
Sbjct: 67  LEDGEPDNTC--EICQAINNGSLTDVIEIDAASNNGVDEIRDIRDKAKYAPTQARVKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++   +    I ATT    +   +  R            ED+
Sbjct: 125 IDEVHMLSSGAFNALLKTLEEPPAHVVFILATTEPHKIPATIISRTQ-RFDFRRITPEDI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              ++       +   D A   IA  + G  R A  +L +V  F        +T E A  
Sbjct: 184 VKRMRFILDDKQITYDDAALKVIAKAAEGGMRDALSILDQVLSF----GDNHVTTEDALD 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTM-IARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
               +    +G      +YL   +A++       IE + A   +P   IEDLIE 
Sbjct: 240 VTGGVTTAVLG------KYLAAVLAKDHAQALKMIEDLLASGKDPGRLIEDLIEY 288


>gi|308190041|ref|YP_003922972.1| Holliday junction DNA helicase RuvB [Mycoplasma fermentans JER]
 gi|307624783|gb|ADN69088.1| Holliday junction DNA helicase RuvB [Mycoplasma fermentans JER]
          Length = 154

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 78/157 (49%), Gaps = 6/157 (3%)

Query: 22  LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           L P   +EF GQ +   +L + ++ +K     + +++FV P G GK +LA ++++    +
Sbjct: 4   LTPINFKEFRGQKDLIKSLIILLQESKK----IPNMIFVAPKGYGKYSLANIISQFKDRS 59

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141
            +  +   I    +L  +L NL++  +LFI++I++L   ++++L+       LD +    
Sbjct: 60  LQPITSNNIVDEFELLNILANLKNNAILFIEDINKLKPELKKLLFDIYNSINLDKVEKIC 119

Query: 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            S +  ++ +  F++I        + +   + F I I
Sbjct: 120 YSNK--RLKIKNFSIIGTINSSNQIDSSKWEGFKILI 154


>gi|169767788|ref|XP_001818365.1| replication factor C subunit 2 [Aspergillus oryzae RIB40]
 gi|83766220|dbj|BAE56363.1| unnamed protein product [Aspergillus oryzae]
          Length = 391

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 47/245 (19%), Positives = 83/245 (33%), Gaps = 51/245 (20%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
              +Q+   +   RP+TL++   Q    + L+  ++A+      L H+LF GPPG GKT+
Sbjct: 30  EEHAQQQPWVEKYRPKTLDDVAAQDHTTNVLQRTLQAS-----NLPHMLFYGPPGTGKTS 84

Query: 70  LAQVVAR-------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDR---------- 106
               +A+             EL  +       V  K  D A +  +              
Sbjct: 85  TILALAKSLFGPALYRSRILELNASDERGIAIVREKVKDFARVQLSHPTGVDKSYFEKYP 144

Query: 107 ----DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTR 162
                ++ +DE   ++   +  L   ME +                  ++RF        
Sbjct: 145 CPPFKIIILDEADSMTQDAQSALRRTMETYS----------------KITRF--CLVCNY 186

Query: 163 VGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
           V  +  PL  R     R    +       + + AKL  L + D    ++   S G  R A
Sbjct: 187 VTRIIEPLASRCS-KFRFKPLDNSAAGDRLAQIAKLENLELEDGVVDKLIQCSDGDLRRA 245

Query: 223 GRLLR 227
              ++
Sbjct: 246 ITYMQ 250


>gi|296241869|ref|YP_003649356.1| replication factor C small subunit [Thermosphaera aggregans DSM
           11486]
 gi|296094453|gb|ADG90404.1| replication factor C small subunit [Thermosphaera aggregans DSM
           11486]
          Length = 325

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 57/293 (19%), Positives = 98/293 (33%), Gaps = 42/293 (14%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E       RPRTL+E   Q E  + LK F+       + + H+LF GPPG GKTT+A  +
Sbjct: 5   ELLWTEKYRPRTLDEVVNQSEIVARLKKFVS-----DKNMPHMLFAGPPGTGKTTMAHCL 59

Query: 75  AR------------ELGVNFRSTSGPVIAKAGDLAALL-TNLEDRDVLFIDEIHRLSIIV 121
           A             EL  +       + +K  + A           ++ +DE   ++   
Sbjct: 60  AHDLYGDNYRQYILELNASDERGIEVIRSKVKEFARTRVVGNVPFKIILLDEADNMTADA 119

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           ++ L   ME +                   +RF LIA       +  P+Q R  +  R  
Sbjct: 120 QQALRRLMELYTAS----------------TRFILIA--NYPSKIIEPIQSRTAV-FRFT 160

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
             + ED+   ++       +   ++A   I   S G  R A  +L+      E       
Sbjct: 161 PLKREDVVERLKYICSNEKVKCHEDALNTIFELSEGDMRRAINILQASAALGEATVENVY 220

Query: 242 TREIADAALLRLAIDKMGFDQL---DLRYLTMIARNFGGGPVGIETISAGLSE 291
                        + ++            L  +   +  G  G++ +     E
Sbjct: 221 KVVGLAHPREVREMIQLALSGNFAEARNKLRTLMITY--GLSGVDVVKQIHKE 271


>gi|88602285|ref|YP_502463.1| replication factor C small subunit [Methanospirillum hungatei JF-1]
 gi|110287812|sp|Q2FQT9|RFCS_METHJ RecName: Full=Replication factor C small subunit; Short=RFC small
           subunit; AltName: Full=Clamp loader small subunit
 gi|88187747|gb|ABD40744.1| replication factor C small subunit [Methanospirillum hungatei JF-1]
          Length = 323

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 80/223 (35%), Gaps = 37/223 (16%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
            I   RPR LE+  GQ E    L+ ++         + H+LF G  G GKTT A  +ARE
Sbjct: 8   WIEKYRPRVLEDIIGQQEIIERLRSYV-----AKREMPHLLFTGNAGTGKTTAAVALARE 62

Query: 78  -----LGVNFRSTSGPVIAKAGDLAALLTNLED--------RDVLFIDEIHRLSIIVEEI 124
                  +NFR  +         +   +               +LF+DE   L+   +  
Sbjct: 63  FFGEDWQMNFRELNASDERGIDVVRNQIKQFARTSPFGGSTFKILFLDEADALTTDAQSA 122

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           L   ME +                        I +      + +P+Q R  I  R     
Sbjct: 123 LRRTMETYAQT------------------CRFILSCNYSAKIIDPIQSRCAI-YRFRPLG 163

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
            + +  +V+R +    L VT+E    I   ++G  R A   L+
Sbjct: 164 RQAVSEMVKRISADQNLTVTEEVIDAIFYVAQGDMRKAINALQ 206


>gi|38567232|emb|CAE76524.1| probable replication factor protein [Neurospora crassa]
          Length = 366

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 55/265 (20%), Positives = 95/265 (35%), Gaps = 48/265 (18%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           ++   +    +   RP+TL + T Q    + L+  ++A+      L H+LF GPPG GKT
Sbjct: 25  TKETPRAQPWVEKYRPKTLSDVTAQDHTITVLQRTLQAS-----NLPHMLFYGPPGTGKT 79

Query: 69  TLAQVVAR-------------ELGVNFRSTSGPVIAKAGDLAAL-LTNLE---------- 104
           +    +A+             EL  +       V  K  D A + LTN            
Sbjct: 80  STILALAKELYGPELIKSRVLELNASDERGISIVREKVKDFARMQLTNPSAAYKARYPCP 139

Query: 105 DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164
              ++ +DE   ++   +  L   ME +                  ++RF        V 
Sbjct: 140 PFKLIILDEADSMTQDAQSALRRTMETYS----------------KITRF--CLICNYVT 181

Query: 165 LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGR 224
            + +PL  R     R    +  + K  ++  A+L G+ + + A   +   S G  R A  
Sbjct: 182 RIIDPLASRCS-KFRFKSLDQGNAKKRLEEIAQLEGVGLEEGAVDALIKCSEGDLRKAIT 240

Query: 225 LLRRVRDFAEVAHAKTITREIADAA 249
            L+      EV       + + D A
Sbjct: 241 YLQSAARLMEVDAKLVTVKVVEDIA 265


>gi|323304258|gb|EGA58032.1| Rfc2p [Saccharomyces cerevisiae FostersB]
          Length = 348

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 44/258 (17%), Positives = 81/258 (31%), Gaps = 48/258 (18%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L +     +   +   RP+ L+E T Q  A + LK  +++A      L H+LF GPPG G
Sbjct: 16  LAAEQSLAQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSA-----NLPHMLFYGPPGTG 70

Query: 67  KTTLAQVVARE------LGVNFRSTSGPVIAKAGDLAALLTNLEDRD------------- 107
           KT+    + +E      +       +         +   + N                  
Sbjct: 71  KTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYP 130

Query: 108 -----VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTR 162
                ++ +DE   ++   +  L   ME +                  ++RF        
Sbjct: 131 CPPYKIIILDEADSMTADAQSALRRTMETYS----------------GVTRF--CLICNY 172

Query: 163 VGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
           V  + +PL  R     R    +  +    ++  ++   +   D     I   S G  R  
Sbjct: 173 VTRIIDPLASRCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRG 231

Query: 223 GRLLRRVRDFAEVAHAKT 240
             LL+     A+      
Sbjct: 232 ITLLQSASKRAQYLGDGK 249


>gi|313677647|ref|YP_004055643.1| DNA polymerase iii, subunits gamma and tau [Marivirga tractuosa DSM
           4126]
 gi|312944345|gb|ADR23535.1| DNA polymerase III, subunits gamma and tau [Marivirga tractuosa DSM
           4126]
          Length = 369

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 51/271 (18%), Positives = 85/271 (31%), Gaps = 41/271 (15%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+  +E  GQ    + LK  I+           +LF GP G+GKTT A+++AR +
Sbjct: 8   ARKYRPKGFDEVVGQKHITTTLKNAIDNDHLAQ----SLLFCGPRGVGKTTCARILARLI 63

Query: 79  GV------------NFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSII 120
                         N             D+  L+  +          V  IDE+H LS  
Sbjct: 64  NDFDVDNMEGSSSLNIYELDAASNNSVDDVRNLIDKVRVPPQHGKYKVYIIDEVHMLSNA 123

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                   +E+                    S    I ATT    +   +  R  I    
Sbjct: 124 AFNAFLKTLEE------------------PPSYAIFILATTEKHKVIPTILSRCQI-YDF 164

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           N  ++ D+   ++  A   G+   + A   IA ++ G  R A  +   +  F+       
Sbjct: 165 NRIKVSDISDHLKEIADREGIEAEEAALHLIAQKADGALRDALSIFDLIVTFSPDNKITY 224

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMI 271
                    L      K+     + +    +
Sbjct: 225 QATIDNLHILDYDYYFKVTDALNNEKIPEAL 255


>gi|145590269|ref|YP_001152271.1| replication factor C small subunit [Pyrobaculum arsenaticum DSM
           13514]
 gi|158514158|sp|A4WGV2|RFCS1_PYRAR RecName: Full=Replication factor C small subunit 1; Short=RFC small
           subunit 1; AltName: Full=Clamp loader small subunit 1
 gi|145282037|gb|ABP49619.1| Replication factor C [Pyrobaculum arsenaticum DSM 13514]
          Length = 329

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 53/238 (22%), Positives = 89/238 (37%), Gaps = 37/238 (15%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E       RPR+ +E     E  + L+ F+     R   + H+LF GPPG GKTT+A V+
Sbjct: 3   ELFWFEKYRPRSFDEVVDLEEVKARLREFV-----RGGNMPHLLFYGPPGTGKTTMALVL 57

Query: 75  ARE-----LGVNFRSTSGPVIAKAGDLAALLTNLED--------RDVLFIDEIHRLSIIV 121
           ARE        N    +         +   +               ++ +DE   ++   
Sbjct: 58  ARELYGEYWRENTLELNASDERGINVIRERVKEFARTAPVGKAPFKLVILDEADNMTSDA 117

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           ++ L   ME +                   +RF L+A    V  + +P+  R  +  R +
Sbjct: 118 QQALRRIMEMY----------------AQNTRFILLA--NYVSRIIDPIISRCAV-FRFS 158

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
                 +   ++  AK  G+ + D+A   I   S G  R A  LL+     ++V  A 
Sbjct: 159 PMPRSLMAERLRHIAKSEGIELRDDAIDLIYEVSEGDMRKAINLLQVAAATSKVVDAN 216


>gi|196039296|ref|ZP_03106602.1| ATP-dependent protease LonB [Bacillus cereus NVH0597-99]
 gi|196029923|gb|EDX68524.1| ATP-dependent protease LonB [Bacillus cereus NVH0597-99]
          Length = 557

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 55/290 (18%), Positives = 100/290 (34%), Gaps = 57/290 (19%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           R +S  +     +RP +  +  GQ +   +LK     A        HV+  GPPG+GKT 
Sbjct: 52  REISLTEPLAEKVRPTSFLDIVGQEDGIKSLK-----AALCGPNPQHVIIYGPPGVGKTA 106

Query: 70  LAQVVARELGVNFRSTS----------------------GPVIAKAGD------------ 95
            A++V  E   N +S                         P+I    D            
Sbjct: 107 AARLVLEEAKRNPKSPFRTNATFIELDATTARFDERGIADPLIGSVHDPIYQGAGAMGQA 166

Query: 96  -----LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL----MVGEGPSARS 146
                    +T+     +LFIDEI  L  I    +   +ED ++ L       E     +
Sbjct: 167 GIPQPKKGAVTDAHGG-ILFIDEIGELHPIQMNKMLKVLEDRKVFLESAYYSEENTMIPT 225

Query: 147 VKINL------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
              ++      + F L+ ATTR      P      + +     + E+++ + +  A    
Sbjct: 226 YIHDIFQKGLPADFRLVGATTRSPEEIPPAIRSRCLEVFFRELDTEEIQKVAKNAADKVE 285

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           + + +     I M +R   R A  L++     A +   ++  ++     +
Sbjct: 286 MQIGENGIEMIGMYARN-GREAINLVQISAGMA-INEERSFIKDEDIEWI 333


>gi|261403255|ref|YP_003247479.1| AAA ATPase central domain protein [Methanocaldococcus vulcanius M7]
 gi|261370248|gb|ACX72997.1| AAA ATPase central domain protein [Methanocaldococcus vulcanius M7]
          Length = 371

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 51/245 (20%), Positives = 100/245 (40%), Gaps = 17/245 (6%)

Query: 26  TLEEFTGQVEACSNLKV---FIEAAKARAE-ALDHVLFVGPPGLGKTTLAQVVARELGVN 81
              E  GQ EA    ++   ++E  +   + A  +VLF GPPG GKT +A+ +A E   +
Sbjct: 122 KFSEIVGQEEAKKKCRIIMKYLEDPELFGDWAPKNVLFYGPPGTGKTLMARALATETNSS 181

Query: 82  FRSTSGPVI--AKAGDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAMEDFQ 133
           F     P +     GD + ++  L  +       V+FIDE+  + +  E           
Sbjct: 182 FILVKAPELIGEHVGDASKMIRELYQKASENAPCVVFIDELDAIGLSREYQSLRGDVSEV 241

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           ++ ++ E    +  +        IAAT    +L + ++ RF   I     + ++   I++
Sbjct: 242 VNALLTELDGIKENEG----VVTIAATNNPAMLDSAIRSRFEEEIEFKLPDDKERLKIME 297

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPR-IAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
             AK   + +       +      + R I  + L+     A +     I +E  + +L +
Sbjct: 298 LYAKKMPIPIKANLKEFVEKTKGFSGRDIKEKFLKPALHRAILEGRDYINKEDLEISLKK 357

Query: 253 LAIDK 257
           L +++
Sbjct: 358 LKVNQ 362


>gi|238926662|ref|ZP_04658422.1| ATP-dependent protease [Selenomonas flueggei ATCC 43531]
 gi|238885608|gb|EEQ49246.1| ATP-dependent protease [Selenomonas flueggei ATCC 43531]
          Length = 713

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 61/268 (22%), Positives = 91/268 (33%), Gaps = 63/268 (23%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           + LLRP+  +E  GQ  A  +L      AK  +    H+L  GPPG+GKTT A++V    
Sbjct: 170 MELLRPKKFDEIVGQERAVRSL-----MAKLSSPYPQHLLLYGPPGVGKTTAARLVLEAA 224

Query: 79  G----------------------VNFRSTSGPVIAKAGD---------LA---------A 98
                                   + R  + P++    D         LA          
Sbjct: 225 KKRAVSPFGADAPFVETDGTTLRWDPRDMTNPLLGSVHDPIYQGAQKSLADSGVPEPKPG 284

Query: 99  LLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSR----- 153
           L+T+     +LFIDEI  +  +++  L   +ED +      E          +       
Sbjct: 285 LVTDAHGG-ILFIDEIGEMDEMLQNKLLKVLEDKRAYF---ESAYYDPDDKRVPPYIRKL 340

Query: 154 --------FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTD 205
                   F LI ATTR     NP        I         ++TIV+  AK   + +  
Sbjct: 341 FEEGAPADFVLIGATTREPDHINPALRSRCAEIYFEPLTPVHIRTIVENAAKRLNVELAP 400

Query: 206 EAACEIAMRSRGTPRIAGRLLRRVRDFA 233
             A E+        R A  +L      A
Sbjct: 401 -GAAELISTYTIEGRKAINILADAYSLA 427


>gi|124515828|gb|EAY57337.1| probable ATPase, AAA family [Leptospirillum rubarum]
          Length = 444

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 68/336 (20%), Positives = 117/336 (34%), Gaps = 49/336 (14%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
             + +    SLL P   EEF GQ        +       R+     ++  GPPG GK+  
Sbjct: 6   EPASQKPLSSLLFPDRPEEFLGQPHLMGERGILRRLIAVRS--FRSMVIHGPPGCGKSAF 63

Query: 71  AQVVARELGVNFRS-----TSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
             ++ + L  +F       +SG  + KA D            +L I+EI R +   +++L
Sbjct: 64  VHLLQKVLPFHFEVVRAGESSGGELKKAIDRGVSYRQSGQDCLLVIEEIDRFTRTQQDVL 123

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
            PA+E   L L+                   ++    +  L  PL  R  +         
Sbjct: 124 VPALERGDLLLL------------------GLSFDNPLRALLPPLASRL-LLFSFQPLSP 164

Query: 186 EDLKTIVQRGAKLT------GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           EDL T+++RG +         ++++ EAA  +  RS G  R    L   +    +    +
Sbjct: 165 EDLLTLLERGRQFLEKRDRSPVSISPEAASVLVRRSGGDGRKLLLLFEALVISRKDHGER 224

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
              +          A     F   +  Y               + ISA +   R+   D 
Sbjct: 225 REVQIGLPEVHGMEAGSGGIFYDREQHY---------------DLISAFIKSIRNHDPDS 269

Query: 300 IEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
              Y+ +       P    R L+ +A + +G+  PH
Sbjct: 270 AIHYLARMIESGEDPVFISRRLVILASEDVGLANPH 305


>gi|86133647|ref|ZP_01052229.1| DNA polymerase III subunit gamma/tau [Polaribacter sp. MED152]
 gi|85820510|gb|EAQ41657.1| DNA polymerase III subunit gamma/tau [Polaribacter sp. MED152]
          Length = 561

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 83/234 (35%), Gaps = 42/234 (17%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+  E+  GQ    + L    E A         +LF GP G+GKT+ A+++A+++
Sbjct: 8   ARKYRPQNFEDVVGQQAITNTL----ENAIKNNHLAQALLFTGPRGVGKTSCARILAKKI 63

Query: 79  G-------------VNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSI 119
                          N             D+ +L   +          V  IDE+H LS 
Sbjct: 64  NQQEVESSEDEDFAFNIFELDAASNNSVDDIRSLTDQVRIPPQTGKYKVYIIDEVHMLSQ 123

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
                    +E+          P A ++ I         ATT    +   +  R  I   
Sbjct: 124 AAFNAFLKTLEE----------PPAHAIFIL--------ATTEKHKIIPTILSRCQIFDF 165

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                ++  K  ++  ++  G+   D+A   IA ++ G  R A  +  RV  F+
Sbjct: 166 KRIGVLDA-KNYLKTISEKEGINADDDALHIIAQKADGAMRDALSIFDRVVSFS 218


>gi|311748354|ref|ZP_07722139.1| DNA polymerase III [Algoriphagus sp. PR1]
 gi|311302776|gb|EAZ81111.2| DNA polymerase III [Algoriphagus sp. PR1]
          Length = 382

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 48/261 (18%), Positives = 88/261 (33%), Gaps = 32/261 (12%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           MM+   + +R            RP   +   GQ    + LK  I             LF 
Sbjct: 1   MMENFVVSAR----------KYRPADFKSVVGQEHITTTLKNAI----KNNHLAQAFLFC 46

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GP G+GKTT A+++A+ +    R        +     +   N    ++  +D     S+ 
Sbjct: 47  GPRGVGKTTCARILAKTINCENRQDDQEACGECESCVS-FKNNSSFNIYELDAASNNSVD 105

Query: 121 VEEIL-----YPAMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLL 166
               L     Y   +      ++ E             ++++        I ATT    +
Sbjct: 106 DIRNLVDQVRYAPQKGQYKVYIIDEVHMLSNQAFNAFLKTLEEPPKYAIFILATTEKHKI 165

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
              +  R  I    N  +I+ +   ++  A+   +   +EA   IA ++ G  R A  + 
Sbjct: 166 IPTILSRCQI-FDFNRIQIDHISNHLKYIAEKESVDFEEEALRLIATKADGALRDALSIF 224

Query: 227 RRVRDFAEVAHAKTITREIAD 247
             +  ++  A  K    E  D
Sbjct: 225 DLIVTYS--AGKKVTYHETID 243


>gi|254687039|ref|ZP_05150897.1| ATP-dependent protease LonB [Bacillus anthracis str. CNEVA-9066]
 gi|254724601|ref|ZP_05186384.1| ATP-dependent protease LonB [Bacillus anthracis str. A1055]
 gi|254736575|ref|ZP_05194281.1| ATP-dependent protease LonB [Bacillus anthracis str. Western North
           America USA6153]
 gi|254741613|ref|ZP_05199300.1| ATP-dependent protease LonB [Bacillus anthracis str. Kruger B]
 gi|254754789|ref|ZP_05206824.1| ATP-dependent protease LonB [Bacillus anthracis str. Vollum]
 gi|254757621|ref|ZP_05209648.1| ATP-dependent protease LonB [Bacillus anthracis str. Australia 94]
          Length = 556

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 55/289 (19%), Positives = 99/289 (34%), Gaps = 57/289 (19%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           R +S  +     +RP +  +  GQ +   +LK     A        HV+  GPPG+GKT 
Sbjct: 51  REISLTEPLAEKVRPTSFLDIVGQEDGIKSLK-----AALCGPNPQHVIIYGPPGVGKTA 105

Query: 70  LAQVVARELGVNFRSTS----------------------GPVIAKAGD------------ 95
            A++V  E   N +S                         P+I    D            
Sbjct: 106 AARLVLEEAKRNPKSPFRTNATFIELDATTARFDERGIADPLIGSVHDPIYQGAGAMGQA 165

Query: 96  -----LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL----MVGEGPSARS 146
                    +T+     +LFIDEI  L  I    +   +ED ++ L       E     +
Sbjct: 166 GIPQPKKGAVTDAHGG-ILFIDEIGELHPIQMNKMLKVLEDRKVFLESAYYSEENTMIPT 224

Query: 147 VKINL------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
              ++      + F L+ ATTR      P      + +     + E+++ + +  A    
Sbjct: 225 YIHDIFQKGLPADFRLVGATTRSPEEIPPAIRSRCLEVFFRELDTEEIQKVAKNAADKVE 284

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
           + + +     I M +R   R A  L++     A +   ++  ++     
Sbjct: 285 MQIGENGIEMIGMYARN-GREAINLVQISAGMA-INEERSFIKDEDIEW 331


>gi|50513623|pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
           (Replication Factor C, Rfc) Bound To The Dna Sliding
           Clamp (Proliferating Cell Nuclear Antigen, Pcna)
          Length = 340

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 42/247 (17%), Positives = 80/247 (32%), Gaps = 44/247 (17%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           +    +   RP TL+E  GQ E  + ++ F++  K     L H+LF GPPG GKT+    
Sbjct: 11  ENLPWVEKYRPETLDEVYGQNEVITTVRKFVDEGK-----LPHLLFYGPPGTGKTSTIVA 65

Query: 74  VAREL------------GVNFRSTSGPVIAKAGDLAALLTNLEDR-DVLFIDEIHRLSII 120
           +ARE+              +       V  +  D A+          ++ +DE   ++  
Sbjct: 66  LAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNA 125

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            +  L   +E +       +                         LT  L  +       
Sbjct: 126 AQNALRRVIERY------TKNTRF------------CVLANYAHKLTPALLSQC----TR 163

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
             ++    + I +R A +       E         +    ++   +RRV +  +   A  
Sbjct: 164 FRFQPLPQEAIERRIANVL----VHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATL 219

Query: 241 ITREIAD 247
              +  +
Sbjct: 220 DNPDEDE 226


>gi|332520220|ref|ZP_08396682.1| DNA polymerase III, subunits gamma and tau [Lacinutrix algicola
           5H-3-7-4]
 gi|332043573|gb|EGI79768.1| DNA polymerase III, subunits gamma and tau [Lacinutrix algicola
           5H-3-7-4]
          Length = 362

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 80/233 (34%), Gaps = 41/233 (17%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+T ++  GQ    + L   I+           +LF GP G+GKT+ A+++A+ +
Sbjct: 8   ARKYRPQTFKDVVGQSAITNTLLNAID----NNHLAQALLFTGPRGVGKTSCARILAKMI 63

Query: 79  G------------VNFRSTSGPVIAKAGDLAALLT------NLEDRDVLFIDEIHRLSII 120
                         N             D+ +L         +    V  IDE+H LS  
Sbjct: 64  NSDGTESNEEDFAFNIFELDAASNNSVDDIRSLTDQVRIPPQVGKYKVYIIDEVHMLSQA 123

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                   +E+                         I ATT    +   +  R  I    
Sbjct: 124 AFNAFLKTLEE------------------PPKHCIFILATTEKHKIIPTILSRCQIFDFK 165

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
               ++D K  ++  A+  G+   D+A   IA ++ G  R A  +  RV  F+
Sbjct: 166 RI-TVKDAKEYLKYIAQEQGINAEDDALHIIAQKADGAMRDALSIFDRVVSFS 217


>gi|229105110|ref|ZP_04235761.1| ATP-dependent protease La [Bacillus cereus Rock3-28]
 gi|228678291|gb|EEL32517.1| ATP-dependent protease La [Bacillus cereus Rock3-28]
          Length = 557

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 55/289 (19%), Positives = 99/289 (34%), Gaps = 57/289 (19%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           R +S  +     +RP +  +  GQ +   +LK     A        HV+  GPPG+GKT 
Sbjct: 52  REISLTEPLAEKVRPTSFLDIVGQEDGIKSLK-----AALCGPNPQHVIIYGPPGVGKTA 106

Query: 70  LAQVVARELGVNFRSTS----------------------GPVIAKAGD------------ 95
            A++V  E   N +S                         P+I    D            
Sbjct: 107 AARLVLEEAKRNPKSPFRTNATFIELDATTARFDERGIADPLIGSVHDPIYQGAGAMGQA 166

Query: 96  -----LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL----MVGEGPSARS 146
                    +T+     +LFIDEI  L  I    +   +ED ++ L       E     +
Sbjct: 167 GIPQPKKGAVTDAHGG-ILFIDEIGELHPIQMNKMLKVLEDRKVFLESAYYSEENTMIPT 225

Query: 147 VKINL------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
              ++      + F L+ ATTR      P      + +     + E+++ + +  A    
Sbjct: 226 YIHDIFQKGLPADFRLVGATTRSPEEIPPAIRSRCLEVFFRELDTEEIQKVAKNAADKVE 285

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
           + + +     I M +R   R A  L++     A +   ++  ++     
Sbjct: 286 MQIGENGIEMIGMYARN-GREAINLVQISAGMA-INEERSFIKDEDIEW 332


>gi|30264539|ref|NP_846916.1| ATP-dependent protease LA [Bacillus anthracis str. Ames]
 gi|47530002|ref|YP_021351.1| ATP-dependent protease LA [Bacillus anthracis str. 'Ames Ancestor']
 gi|49187363|ref|YP_030615.1| ATP-dependent protease LA [Bacillus anthracis str. Sterne]
 gi|49481467|ref|YP_038521.1| ATP-dependent protease LA [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|52141035|ref|YP_085794.1| ATP-dependent protease LA [Bacillus cereus E33L]
 gi|65321840|ref|ZP_00394799.1| COG1067: Predicted ATP-dependent protease [Bacillus anthracis str.
           A2012]
 gi|118479637|ref|YP_896788.1| ATP-dependent protease LA [Bacillus thuringiensis str. Al Hakam]
 gi|165872002|ref|ZP_02216643.1| ATP-dependent protease LonB [Bacillus anthracis str. A0488]
 gi|167636197|ref|ZP_02394501.1| ATP-dependent protease LonB [Bacillus anthracis str. A0442]
 gi|167640761|ref|ZP_02399021.1| ATP-dependent protease LonB [Bacillus anthracis str. A0193]
 gi|170688659|ref|ZP_02879864.1| ATP-dependent protease LonB [Bacillus anthracis str. A0465]
 gi|170708358|ref|ZP_02898802.1| ATP-dependent protease LonB [Bacillus anthracis str. A0389]
 gi|177653984|ref|ZP_02936025.1| ATP-dependent protease LonB [Bacillus anthracis str. A0174]
 gi|190566911|ref|ZP_03019827.1| ATP-dependent protease LonB [Bacillus anthracis Tsiankovskii-I]
 gi|196034404|ref|ZP_03101813.1| ATP-dependent protease LonB [Bacillus cereus W]
 gi|218905673|ref|YP_002453507.1| ATP-dependent protease LonB [Bacillus cereus AH820]
 gi|225866452|ref|YP_002751830.1| ATP-dependent protease LonB [Bacillus cereus 03BB102]
 gi|227817252|ref|YP_002817261.1| ATP-dependent protease LonB [Bacillus anthracis str. CDC 684]
 gi|228917109|ref|ZP_04080667.1| ATP-dependent protease La [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228929518|ref|ZP_04092537.1| ATP-dependent protease La [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228935790|ref|ZP_04098602.1| ATP-dependent protease La [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228948185|ref|ZP_04110469.1| ATP-dependent protease La [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|229093568|ref|ZP_04224669.1| ATP-dependent protease La [Bacillus cereus Rock3-42]
 gi|229600336|ref|YP_002868755.1| ATP-dependent protease LonB [Bacillus anthracis str. A0248]
 gi|30259197|gb|AAP28402.1| ATP-dependent protease LonB [Bacillus anthracis str. Ames]
 gi|47505150|gb|AAT33826.1| ATP-dependent protease LonB [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49181290|gb|AAT56666.1| ATP-dependent protease LA [Bacillus anthracis str. Sterne]
 gi|49333023|gb|AAT63669.1| ATP-dependent protease LA [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|51974504|gb|AAU16054.1| ATP-dependent protease LA [Bacillus cereus E33L]
 gi|118418862|gb|ABK87281.1| ATP-dependent protease LA [Bacillus thuringiensis str. Al Hakam]
 gi|164712292|gb|EDR17828.1| ATP-dependent protease LonB [Bacillus anthracis str. A0488]
 gi|167511333|gb|EDR86719.1| ATP-dependent protease LonB [Bacillus anthracis str. A0193]
 gi|167528418|gb|EDR91186.1| ATP-dependent protease LonB [Bacillus anthracis str. A0442]
 gi|170126733|gb|EDS95616.1| ATP-dependent protease LonB [Bacillus anthracis str. A0389]
 gi|170667345|gb|EDT18103.1| ATP-dependent protease LonB [Bacillus anthracis str. A0465]
 gi|172081039|gb|EDT66117.1| ATP-dependent protease LonB [Bacillus anthracis str. A0174]
 gi|190561902|gb|EDV15871.1| ATP-dependent protease LonB [Bacillus anthracis Tsiankovskii-I]
 gi|195992946|gb|EDX56905.1| ATP-dependent protease LonB [Bacillus cereus W]
 gi|218537577|gb|ACK89975.1| ATP-dependent protease LonB [Bacillus cereus AH820]
 gi|225788118|gb|ACO28335.1| ATP-dependent protease LonB [Bacillus cereus 03BB102]
 gi|227005364|gb|ACP15107.1| ATP-dependent protease LonB [Bacillus anthracis str. CDC 684]
 gi|228689777|gb|EEL43583.1| ATP-dependent protease La [Bacillus cereus Rock3-42]
 gi|228811543|gb|EEM57880.1| ATP-dependent protease La [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228823847|gb|EEM69667.1| ATP-dependent protease La [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228830097|gb|EEM75715.1| ATP-dependent protease La [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228842527|gb|EEM87617.1| ATP-dependent protease La [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|229264744|gb|ACQ46381.1| ATP-dependent protease LonB [Bacillus anthracis str. A0248]
          Length = 557

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 55/289 (19%), Positives = 99/289 (34%), Gaps = 57/289 (19%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           R +S  +     +RP +  +  GQ +   +LK     A        HV+  GPPG+GKT 
Sbjct: 52  REISLTEPLAEKVRPTSFLDIVGQEDGIKSLK-----AALCGPNPQHVIIYGPPGVGKTA 106

Query: 70  LAQVVARELGVNFRSTS----------------------GPVIAKAGD------------ 95
            A++V  E   N +S                         P+I    D            
Sbjct: 107 AARLVLEEAKRNPKSPFRTNATFIELDATTARFDERGIADPLIGSVHDPIYQGAGAMGQA 166

Query: 96  -----LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL----MVGEGPSARS 146
                    +T+     +LFIDEI  L  I    +   +ED ++ L       E     +
Sbjct: 167 GIPQPKKGAVTDAHGG-ILFIDEIGELHPIQMNKMLKVLEDRKVFLESAYYSEENTMIPT 225

Query: 147 VKINL------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
              ++      + F L+ ATTR      P      + +     + E+++ + +  A    
Sbjct: 226 YIHDIFQKGLPADFRLVGATTRSPEEIPPAIRSRCLEVFFRELDTEEIQKVAKNAADKVE 285

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
           + + +     I M +R   R A  L++     A +   ++  ++     
Sbjct: 286 MQIGENGIEMIGMYARN-GREAINLVQISAGMA-INEERSFIKDEDIEW 332


>gi|76801102|ref|YP_326110.1| replication factor C small subunit [Natronomonas pharaonis DSM
           2160]
 gi|83288436|sp|Q3ITJ2|RFCS_NATPD RecName: Full=Replication factor C small subunit; Short=RFC small
           subunit; AltName: Full=Clamp loader small subunit
 gi|76556967|emb|CAI48541.1| replication factor C small subunit I [Natronomonas pharaonis DSM
           2160]
          Length = 325

 Score = 75.9 bits (185), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 84/227 (37%), Gaps = 36/227 (15%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +  I   RP+TL++  G       LK +I         L H+LF GP G+GKTT A  +A
Sbjct: 12  EIWIEKYRPQTLDDIVGHESITERLKQYI-----AQNDLPHLLFAGPAGVGKTTAATAIA 66

Query: 76  REL------------GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE 123
           +E+              + +     V  +    A       D  ++F+DE   L+   + 
Sbjct: 67  KEVYGDDWRENFLELNASDQRGIDVVRDRIKSFARASFGGYDHRIIFLDEADALTSDAQS 126

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
            L   ME F                 + +RF  I +      + +P+Q R  +  R +  
Sbjct: 127 ALRRTMEQFS----------------DNTRF--ILSCNYSSQIIDPIQSRCAV-FRFSPL 167

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
               +   ++  A   G+ +TD+    +   + G  R A   L+   
Sbjct: 168 GDAAVDEQIRIIADTEGIELTDDGVDALVYAADGDMRKAINGLQAAA 214


>gi|300726477|ref|ZP_07059923.1| DNA polymerase III, gamma and tau subunit [Prevotella bryantii B14]
 gi|299776205|gb|EFI72769.1| DNA polymerase III, gamma and tau subunit [Prevotella bryantii B14]
          Length = 614

 Score = 75.9 bits (185), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 50/312 (16%), Positives = 103/312 (33%), Gaps = 39/312 (12%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T     GQ    + LK  +++ K         LF GP G+GKTT A++ A+ +
Sbjct: 8   ARKYRPMTFASVVGQSALTTTLKNAVKSKKLAHAY----LFCGPRGVGKTTCARIFAKVI 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI------IVEEILYPAMEDF 132
                   G    +     A        ++  +D     S+      + +  + P +  +
Sbjct: 64  NCENPREDGEACNECESCKA-FNEGRSYNIFELDAASNNSVENIKTLMEQTRIPPQVGKY 122

Query: 133 QLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           ++ ++               ++++   +    + ATT    +   +  R  I        
Sbjct: 123 KVFIIDEVHMLSTAAFNAFLKTLEEPPAHVIFVLATTEKHKILPTILSRCQIYDFERM-T 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH------- 237
           + +    +++ A   G+   D A   IA ++ G  R A  +  +V  +++          
Sbjct: 182 VPNTIAHLKQIADKEGITYEDAALEVIAEKADGGMRDALSIFDQVASYSQGNITYEKVIA 241

Query: 238 -----AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEP 292
                      ++ D AL     D M         L  I      G   I  ++  +   
Sbjct: 242 DLNVLDSNNYFKLTDLALENKVSDAM-------LLLNSILEKGFDGSHLISGLAQHIRNV 294

Query: 293 RDAIEDLIEPYM 304
             A +++  P +
Sbjct: 295 MMAKDEVTLPLL 306


>gi|145592047|ref|YP_001154049.1| replication factor C small subunit [Pyrobaculum arsenaticum DSM
           13514]
 gi|158514167|sp|A4WLY0|RFCS2_PYRAR RecName: Full=Replication factor C small subunit 2; Short=RFC small
           subunit 2; AltName: Full=Clamp loader small subunit 2
 gi|145283815|gb|ABP51397.1| replication factor C small subunit [Pyrobaculum arsenaticum DSM
           13514]
          Length = 322

 Score = 75.9 bits (185), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 56/252 (22%), Positives = 93/252 (36%), Gaps = 42/252 (16%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
            E       RPR+ +E     E  + L+ F+     R   + H+LF GPPG GKTT+A V
Sbjct: 2   SELFWFEKYRPRSFDEVVDLEEVKARLREFV-----RGGNMPHLLFYGPPGTGKTTMALV 56

Query: 74  VARE-----LGVNFRSTSGPVIAKAGDLAALLTNLED--------RDVLFIDEIHRLSII 120
           +ARE        N    +         +   +               ++ +DE   ++  
Sbjct: 57  LARELYGEYWRENTLELNASDERGINVIRERVKEFARTAPVGKAPFKLVILDEADNMTSD 116

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            ++ L   ME +                   +RF L+A    +  +  P+Q R  + IR 
Sbjct: 117 AQQALRRIMEMY----------------AQNTRFILLA--NYISGIIEPIQSR-TVMIRF 157

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           +    E +   ++  A   G+ ++D+A   I   ++G  R A   L+           K 
Sbjct: 158 SPLPKEAVFARLRYIADNEGVKISDDALEAIYEFTQGDMRRAINALQIAAT-----TGKE 212

Query: 241 ITREIADAALLR 252
           IT E    AL  
Sbjct: 213 ITEETVAKALGM 224


>gi|225620830|ref|YP_002722088.1| DNA polymerase III subunit gamma and tau [Brachyspira
           hyodysenteriae WA1]
 gi|225215650|gb|ACN84384.1| DNA polymerase III, gamma and tau subunits [Brachyspira
           hyodysenteriae WA1]
          Length = 527

 Score = 75.9 bits (185), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 87/249 (34%), Gaps = 53/249 (21%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+T EE  GQ          I  + A+ +     LF G  G+GKT+LA+++A+ L
Sbjct: 9   ARKYRPQTFEEVIGQEHITKT----ISKSIAQKKIAHAYLFSGAHGVGKTSLARIIAKAL 64

Query: 79  GV------------------------NFRSTSGPVIAKAGDLAALLTN------LEDRDV 108
                                     +     G       ++  ++ N           V
Sbjct: 65  NCVNGPTDKPCGVCPSCTQIENGTPLDVIEIDGASNRGIENIRTIIENVRISPVAGKYKV 124

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
             IDE+H+++      L   +E+          P A  V I         ATT    +  
Sbjct: 125 YIIDEVHQITNEAFNALLKTLEE----------PPAHVVFIL--------ATTEAERVLP 166

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            ++ R           IEDL+ I++       +   +EA   IA ++RG+ R +  +L +
Sbjct: 167 TIRSRCQ-QYTFKSLGIEDLEKILKGILDKENIKYDEEAIFLIAKQARGSVRDSETILEK 225

Query: 229 VRDFAEVAH 237
           +  +     
Sbjct: 226 MIAYTTDKK 234


>gi|126458633|ref|YP_001054911.1| replication factor C small subunit [Pyrobaculum calidifontis JCM
           11548]
 gi|158513488|sp|A3MS28|RFCS_PYRCJ RecName: Full=Replication factor C small subunit; Short=RFC small
           subunit; AltName: Full=Clamp loader small subunit
 gi|126248354|gb|ABO07445.1| Replication factor C [Pyrobaculum calidifontis JCM 11548]
          Length = 326

 Score = 75.9 bits (185), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 53/233 (22%), Positives = 88/233 (37%), Gaps = 37/233 (15%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
            E       RPR+ EE     E  + L+ F++A       L H+LF GPPG GKTT+A V
Sbjct: 2   SELFWFEKYRPRSFEEVVDLEEVKARLREFVKAG-----NLPHLLFYGPPGTGKTTMALV 56

Query: 74  VARE-----LGVNFRSTSGPVIAKAGDLAALLTNLED--------RDVLFIDEIHRLSII 120
           +ARE        N    +       G +   +               ++ +DE   ++  
Sbjct: 57  LARELYGEYWRENTLELNASDERGIGVIRERVKEFARTAPVGKAPFKLVILDEADNMTSD 116

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            ++ L   ME                +    +RF L+A    V  + +P+  R  +  R 
Sbjct: 117 AQQALRRIME----------------IYAQNTRFILLA--NYVSRIIDPIISRCAV-FRF 157

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
           +      +   ++  A+  G+ + D+A   I   S G  R A  LL+     +
Sbjct: 158 SPMPRHLMAERLREIARSEGVELKDDAIDLIYEISEGDMRKAINLLQVAAAVS 210


>gi|126179196|ref|YP_001047161.1| replication factor C small subunit [Methanoculleus marisnigri JR1]
 gi|150415672|sp|A3CUX9|RFCS_METMJ RecName: Full=Replication factor C small subunit; Short=RFC small
           subunit; AltName: Full=Clamp loader small subunit
 gi|125861990|gb|ABN57179.1| replication factor C small subunit [Methanoculleus marisnigri JR1]
          Length = 322

 Score = 75.9 bits (185), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 80/223 (35%), Gaps = 37/223 (16%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
            I   RPR L+E  GQ +    L+ +++        L H+LF G  G+GKTT A  +ARE
Sbjct: 8   WIEKYRPRRLDEMVGQKDIVVRLQSYVKTG-----NLPHLLFTGSAGIGKTTAAVALARE 62

Query: 78  -----LGVNFRSTSGPVIAKAGDLAALLTNLED--------RDVLFIDEIHRLSIIVEEI 124
                   NFR  +         +   +               +LF+DE   L+   +  
Sbjct: 63  FFGDSWQTNFREMNASDERGIDVVRNQIKEFARTSPLAGATFKILFLDEADALTTDAQAA 122

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           L   ME +                        I +      + +P+Q R  I  R    +
Sbjct: 123 LRRTMETYART------------------CRFILSCNYSSKIIDPIQSRCAI-YRFRPLD 163

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
            E +    +R A   GL VT+ A   I   + G  R A   L+
Sbjct: 164 REAVIEETRRIAAAEGLTVTEGALDAIVYVASGDMRKAINALQ 206


>gi|229098945|ref|ZP_04229880.1| ATP-dependent protease La [Bacillus cereus Rock3-29]
 gi|229117974|ref|ZP_04247334.1| ATP-dependent protease La [Bacillus cereus Rock1-3]
 gi|228665423|gb|EEL20905.1| ATP-dependent protease La [Bacillus cereus Rock1-3]
 gi|228684443|gb|EEL38386.1| ATP-dependent protease La [Bacillus cereus Rock3-29]
          Length = 557

 Score = 75.9 bits (185), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 55/289 (19%), Positives = 99/289 (34%), Gaps = 57/289 (19%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           R +S  +     +RP +  +  GQ +   +LK     A        HV+  GPPG+GKT 
Sbjct: 52  REISLTEPLAEKVRPTSFLDIVGQEDGIKSLK-----AALCGPNPQHVIIYGPPGVGKTA 106

Query: 70  LAQVVARELGVNFRSTS----------------------GPVIAKAGD------------ 95
            A++V  E   N +S                         P+I    D            
Sbjct: 107 AARLVLEEAKRNPKSPFRTNATFIELDATTARFDERGIADPLIGSVHDPIYQGAGAMGQA 166

Query: 96  -----LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL----MVGEGPSARS 146
                    +T+     +LFIDEI  L  I    +   +ED ++ L       E     +
Sbjct: 167 GIPQPKKGAVTDAHGG-ILFIDEIGELHPIQMNKMLKVLEDRKVFLESAYYSEENTMIPT 225

Query: 147 VKINL------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
              ++      + F L+ ATTR      P      + +     + E+++ + +  A    
Sbjct: 226 YIHDIFQKGLPADFRLVGATTRSPEEIPPAIRSRCLEVFFRELDTEEIQKVAKNAADKVE 285

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
           + + +     I M +R   R A  L++     A +   ++  ++     
Sbjct: 286 MQIGENGIEMIGMYARN-GREAINLVQISAGMA-INEERSFIKDEDIEW 332


>gi|302770687|ref|XP_002968762.1| hypothetical protein SELMODRAFT_90486 [Selaginella moellendorffii]
 gi|300163267|gb|EFJ29878.1| hypothetical protein SELMODRAFT_90486 [Selaginella moellendorffii]
          Length = 326

 Score = 75.9 bits (185), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 52/270 (19%), Positives = 89/270 (32%), Gaps = 40/270 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+ L +  G  +A   L+V      AR   + +++F GPPG+GKTT    +A 
Sbjct: 10  PWVEKYRPQKLADVVGNQDAIGRLQVI-----ARDGNMPNLIFSGPPGIGKTTCIMAMAH 64

Query: 77  EL------------GVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIHRLSIIVE 122
           E+              +       V  K    A     L      V+ +DE   ++   +
Sbjct: 65  EMLGALAKEAVLELNASDDRGIDVVRNKIKMFAQKKLTLPRGRHKVVILDEADSMTSGAQ 124

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           + L   ME +           + S +  L       A      +  P+Q R  I      
Sbjct: 125 QALRRTMEIY-----------SSSTRFGL-------ACNLSSQIIEPIQSRCAIVRFTRL 166

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE-VAHAKTI 241
            E + L  +++  A    +    E    +   + G  R A   L+      + V      
Sbjct: 167 SEQDILARLLKVAAAE-KVPYVPEGLEAVVFTADGDMRQALNNLQATYSGFQFVNRENVF 225

Query: 242 TREIADAALLRLAIDKMGF-DQLDLRYLTM 270
                   LL   + +     ++D  YL M
Sbjct: 226 KVCDQPHPLLVSTMIQNTLAGKIDEAYLGM 255


>gi|289435979|ref|YP_003465851.1| DNA polymerase III, gamma and tau subunits [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
 gi|289172223|emb|CBH28769.1| DNA polymerase III, gamma and tau subunits [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
          Length = 578

 Score = 75.9 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 57/293 (19%), Positives = 104/293 (35%), Gaps = 35/293 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RP++ ++  GQ      LK  I     + +     LF GP G GKT+ A++ A+
Sbjct: 5   ALYRVFRPQSFQDVVGQEHVTKTLKNAI----IQNKTSHAYLFSGPRGTGKTSAAKIFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +         P      ++    T+    DVL ID      +  +  I E++ Y     
Sbjct: 61  AINCEHGHDGEPCNEC--EICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYAPTVA 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT    L   +  R         
Sbjct: 119 KYKVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRI 178

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
              + +   ++   K   +   ++A   +A  + G  R A  LL +V  +     ++ +T
Sbjct: 179 TTQDIIGR-LEFILKEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISY----GSEEVT 233

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV-GIETISAGLSEPRD 294
            E    AL        G          +++  F G     I T++A L+E +D
Sbjct: 234 VE---DALEITGSVAQGL------LTKLVSAAFDGDAAEAISTLTALLAEGKD 277


>gi|196044877|ref|ZP_03112111.1| ATP-dependent protease LonB [Bacillus cereus 03BB108]
 gi|229186713|ref|ZP_04313871.1| ATP-dependent protease La [Bacillus cereus BGSC 6E1]
 gi|196024365|gb|EDX63038.1| ATP-dependent protease LonB [Bacillus cereus 03BB108]
 gi|228596726|gb|EEK54388.1| ATP-dependent protease La [Bacillus cereus BGSC 6E1]
          Length = 557

 Score = 75.9 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 55/289 (19%), Positives = 99/289 (34%), Gaps = 57/289 (19%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           R +S  +     +RP +  +  GQ +   +LK     A        HV+  GPPG+GKT 
Sbjct: 52  REISLTEPLAEKVRPTSFLDIVGQEDGIKSLK-----AALCGPNPQHVIIYGPPGVGKTA 106

Query: 70  LAQVVARELGVNFRSTS----------------------GPVIAKAGD------------ 95
            A++V  E   N +S                         P+I    D            
Sbjct: 107 AARLVLEEAKRNPKSPFRTNATFIELDATTARFDERGIADPLIGSVHDPIYQGAGAMGQA 166

Query: 96  -----LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL----MVGEGPSARS 146
                    +T+     +LFIDEI  L  I    +   +ED ++ L       E     +
Sbjct: 167 GIPQPKKGAVTDAHGG-ILFIDEIGELHPIQMNKMLKVLEDRKVFLESAYYSEENTMIPT 225

Query: 147 VKINL------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
              ++      + F L+ ATTR      P      + +     + E+++ + +  A    
Sbjct: 226 YIHDIFQKGLPADFRLVGATTRSPEEIPPAIRSRCLEVFFRELDTEEIQKVAKNAADKVE 285

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
           + + +     I M +R   R A  L++     A +   ++  ++     
Sbjct: 286 MQIGENGIEMIGMYARN-GREAINLVQISAGMA-INEERSFIKDEDIEW 332


>gi|324328375|gb|ADY23635.1| ATP-dependent protease LA [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 556

 Score = 75.9 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 57/288 (19%), Positives = 98/288 (34%), Gaps = 56/288 (19%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           R +S  +     +RP +  +  GQ +   +LK     A        HV+  GPPG+GKT 
Sbjct: 51  REISLTEPLAEKVRPTSFLDIVGQEDGIKSLK-----AALCGPNPQHVIIYGPPGVGKTA 105

Query: 70  LAQVVARELGVNFRSTS----------------------GPVIAKAGD------------ 95
            A++V  E   N +S                         P+I    D            
Sbjct: 106 AARLVLEEAKRNPKSPFRTNATFIELDATTARFDERGIADPLIGSVHDPIYQGAGAMGQA 165

Query: 96  -----LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL----MVGEGPSARS 146
                    +T+     +LFIDEI  L  I    +   +ED ++ L       E     +
Sbjct: 166 GIPQPKKGAVTDAHGG-ILFIDEIGELHPIQMNKMLKVLEDRKVFLESAYYSEENTMIPT 224

Query: 147 VKINL------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
              ++      + F L+ ATTR      P      + +     + E+++ + +  A+   
Sbjct: 225 YIHDIFQKGLPADFRLVGATTRSPDEIPPAIRSRCLEVFFRELDTEEIQKVAKNAAEKVE 284

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           + + +     I M +R   R A  L++     A       I  E  + 
Sbjct: 285 MQIGENGIEMIGMYARN-GREAINLVQISAGMAINEERPFIKDEDIEW 331


>gi|168207908|ref|ZP_02633913.1| ATP-dependent protease [Clostridium perfringens E str. JGS1987]
 gi|170660782|gb|EDT13465.1| ATP-dependent protease [Clostridium perfringens E str. JGS1987]
          Length = 632

 Score = 75.9 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 59/289 (20%), Positives = 99/289 (34%), Gaps = 57/289 (19%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG- 79
           LLRP + +E  GQ  A  +L      +K  +    H++  GPPG+GKTT A++       
Sbjct: 165 LLRPDSFDEVVGQERAVKSL-----LSKLASPYPQHIILYGPPGVGKTTAARIALETAKK 219

Query: 80  ---------------------VNFRSTSGPVIAKA---------GDLAAL---------L 100
                                 + R  + P++             DLA +         +
Sbjct: 220 LKSTPFDDRSKFIEVNGTTLRWDPREITNPLLGSVHDPIYQGSKRDLAEIGVPEPKPGLV 279

Query: 101 TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV------GEGPSARSVKIN---- 150
           T      +LFIDEI  L  I++  L   +ED +++          E        +     
Sbjct: 280 TEAHGG-ILFIDEIGELDEILQNKLLKVLEDKRVEFSSSYYDPDDENTPKYIKYLFDKGA 338

Query: 151 LSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACE 210
            + F LI ATTR     NP        +        D++ IV   AK   + + +    +
Sbjct: 339 PADFVLIGATTREPGEINPALRSRCTEVYFEPLSSRDIEKIVLNAAKKLNVKLEEGLEKK 398

Query: 211 IAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259
           IA  +    R A  +L      A       +  ++   +     +  +G
Sbjct: 399 IASYT-IEGRRAVNILADAYGHAIYGLEGDVPEDLEITSKDLNEVVSIG 446


>gi|301055978|ref|YP_003794189.1| ATP-dependent protease LA [Bacillus anthracis CI]
 gi|300378147|gb|ADK07051.1| ATP-dependent protease LA [Bacillus cereus biovar anthracis str.
           CI]
          Length = 557

 Score = 75.9 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 55/289 (19%), Positives = 99/289 (34%), Gaps = 57/289 (19%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           R +S  +     +RP +  +  GQ +   +LK     A        HV+  GPPG+GKT 
Sbjct: 52  REISLTEPLAEKVRPTSFLDIVGQEDGIKSLK-----AALCGPNPQHVIIYGPPGVGKTA 106

Query: 70  LAQVVARELGVNFRSTS----------------------GPVIAKAGD------------ 95
            A++V  E   N +S                         P+I    D            
Sbjct: 107 AARLVLEEAKRNPKSPFRTNATFIELDATTARFDERGIADPLIGSVHDPIYQGAGAMGQA 166

Query: 96  -----LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL----MVGEGPSARS 146
                    +T+     +LFIDEI  L  I    +   +ED ++ L       E     +
Sbjct: 167 GIPQPKKGAVTDAHGG-ILFIDEIGELHPIQMNKMLKVLEDRKVFLESAYYSEENTMIPT 225

Query: 147 VKINL------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
              ++      + F L+ ATTR      P      + +     + E+++ + +  A    
Sbjct: 226 YIHDIFQKGLPADFRLVGATTRSPEEIPPAIRSRCLEVFFRELDTEEIQKVAKNAADKVE 285

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
           + + +     I M +R   R A  L++     A +   ++  ++     
Sbjct: 286 MQIGENGIEMIGMYARN-GREAINLVQISAGMA-INEERSFIKDEDIEW 332


>gi|134300399|ref|YP_001113895.1| ATPase central domain-containing protein [Desulfotomaculum reducens
           MI-1]
 gi|134053099|gb|ABO51070.1| AAA ATPase, central domain protein [Desulfotomaculum reducens MI-1]
          Length = 571

 Score = 75.9 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 59/290 (20%), Positives = 99/290 (34%), Gaps = 58/290 (20%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M   + L  R +S  +      RP+   E  GQ E   +L+     A        HV+  
Sbjct: 48  MEKLQRL--RAISLTEPLAEKTRPKKFSEIIGQEEGLKSLR-----AALCGPNPQHVIVY 100

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDV------------ 108
           GPPG+GKT  A++V  E      S      AK  +L A     ++R +            
Sbjct: 101 GPPGVGKTAAARLVLEEAKKVPSSPF-KENAKFIELDATTARFDERGIADPLIGSVHDPI 159

Query: 109 ---------------------------LFIDEIHRLSIIVEEILYPAMEDFQLDL----M 137
                                      LFIDEI  L  I    L   +ED ++ L     
Sbjct: 160 YQGAGPMGMAGIPQPKPGAVTKAHGGLLFIDEIGELHPIQMNKLLKVLEDRKVFLESAYY 219

Query: 138 VGEGPSARSVKINL------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
             E  +  +   ++      + F ++ ATTR      P      + I     + ++++ I
Sbjct: 220 STEDSNIPTHIHDIFQNGLPADFRMVGATTRTPDEIPPAIRSRCLEIFFRPLQQDEIEKI 279

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
               A+  G  + ++ A ++  R     R +  +++     A     K I
Sbjct: 280 ADNAAQKIGFPL-EKGALDVIKRYATNGRESVNIIQIAGGIALTEGRKEI 328


>gi|240104120|ref|YP_002960429.1| replication factor C large subunit [Thermococcus gammatolerans EJ3]
 gi|239911674|gb|ACS34565.1| Replication factor C, large subunit (rfcL) [Thermococcus
           gammatolerans EJ3]
          Length = 507

 Score = 75.9 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 80/225 (35%), Gaps = 29/225 (12%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEA-LDHVLFVGPPGLGKTTLAQV 73
           E   +   RPR L E   Q +A   ++ ++EA           ++  GPPG+GKTT    
Sbjct: 6   EVPWVEKYRPRKLSEIVNQEKAIEQVRAWVEAWLHGNPPKKKALILAGPPGVGKTTTVYA 65

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILY 126
           +A E G      +         +   +          + R ++F+DE   +         
Sbjct: 66  LANEYGFEVIELNASDERTYEKIERYVQAAYTMDILGKRRKLIFLDEADNIEPS------ 119

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
                         G    +  I+ +R  +I +      +   +++R  I       + +
Sbjct: 120 --------------GAREIAKLIDRARNPIIMSANHYWEVPKEIRNRAQIVEYKRLTQRD 165

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            +K +V R  K  G  V  E   EIA R+ G  R A   L+ V  
Sbjct: 166 IIKALV-RILKREGKTVPKEILYEIAKRANGDLRAAINDLQTVVT 209


>gi|229032125|ref|ZP_04188102.1| ATP-dependent protease La [Bacillus cereus AH1271]
 gi|228729181|gb|EEL80180.1| ATP-dependent protease La [Bacillus cereus AH1271]
          Length = 557

 Score = 75.9 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 55/289 (19%), Positives = 99/289 (34%), Gaps = 57/289 (19%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           R +S  +     +RP +  +  GQ +   +LK     A        HV+  GPPG+GKT 
Sbjct: 52  REISLTEPLAEKVRPTSFLDIVGQEDGIKSLK-----AALCGPNPQHVIIYGPPGVGKTA 106

Query: 70  LAQVVARELGVNFRSTS----------------------GPVIAKAGD------------ 95
            A++V  E   N +S                         P+I    D            
Sbjct: 107 AARLVLEEAKRNPKSPFRTNATFIELDATTARFDERGIADPLIGSVHDPIYQGAGAMGQA 166

Query: 96  -----LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL----MVGEGPSARS 146
                    +T+     +LFIDEI  L  I    +   +ED ++ L       E     +
Sbjct: 167 GIPQPKKGAVTDAHGG-ILFIDEIGELHPIQMNKMLKVLEDRKVFLESAYYSEENTMIPT 225

Query: 147 VKINL------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
              ++      + F L+ ATTR      P      + +     + E+++ + +  A    
Sbjct: 226 YIHDIFQKGLPADFRLVGATTRSPEEIPPAIRSRCLEVFFRELDTEEIQKVAKNAADKVE 285

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
           + + +     I M +R   R A  L++     A +   ++  ++     
Sbjct: 286 MQIGENGIEMIGMYARN-GREAINLVQISAGMA-INEERSFIKDEDIEW 332


>gi|116207062|ref|XP_001229340.1| hypothetical protein CHGG_02824 [Chaetomium globosum CBS 148.51]
 gi|88183421|gb|EAQ90889.1| hypothetical protein CHGG_02824 [Chaetomium globosum CBS 148.51]
          Length = 382

 Score = 75.9 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 57/267 (21%), Positives = 94/267 (35%), Gaps = 52/267 (19%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
              ++    +   RP+TL + T Q    + L+  ++A+      L H+LF GPPG GKT+
Sbjct: 28  SETTRVQPWVEKYRPKTLSDVTAQDHTITVLERTLQAS-----NLPHMLFYGPPGTGKTS 82

Query: 70  LAQVVAR-------------ELGVNFRSTSGPVIAKAGDLAA-LLTN--LEDRD------ 107
               +A+             EL  +       V  K  D A   LTN     +       
Sbjct: 83  TILALAKELYGPELMKSRVLELNASDERGISIVREKVKDFARTQLTNPPAGYKTRYPCPP 142

Query: 108 --VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
             ++ +DE   ++   +  L   ME +                  ++RF        V  
Sbjct: 143 FKIIILDEADSMTQDAQSALRRTMETYS----------------KITRF--CLICNYVTR 184

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           + +PL  R     R    +  + +  ++  A+L G+ + D A   +   S G  R A   
Sbjct: 185 IIDPLASRCS-KFRFKSLDQGNARRRLEEIARLEGVPIEDAAVDALIKCSDGDLRKAITF 243

Query: 226 L----RRVRDFAEVAHAKTITREIADA 248
           L    R V   A VA  +       D 
Sbjct: 244 LQSAARLVGASASVAGGEDGEAMDVDK 270


>gi|331270303|ref|YP_004396795.1| Sporulation protease LonB [Clostridium botulinum BKT015925]
 gi|329126853|gb|AEB76798.1| Sporulation protease LonB [Clostridium botulinum BKT015925]
          Length = 564

 Score = 75.9 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 60/275 (21%), Positives = 94/275 (34%), Gaps = 56/275 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV---ARELG 79
           RP++ +E  GQ +    L+  I           HV+  GPPG+GKT  A+VV   A++  
Sbjct: 63  RPKSFKEIIGQEKGLKALEAAI-----CGPNPQHVIIYGPPGVGKTAAARVVLENAKKKE 117

Query: 80  VNFRSTSG---------------------------PVIAKAGDLA---------ALLTNL 103
            +  + +                            P+   AG L            +T  
Sbjct: 118 YSPFNENAKFVEIDATTVRFDDRGIADPLIGSVHDPIYQGAGALGSAGIPQPKPGAVTKA 177

Query: 104 EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL----MVGEGPSARSVKINL------SR 153
               +LFIDEI  L  +    L   MED ++ L       E P+  S   ++      + 
Sbjct: 178 HGG-ILFIDEIGELHPVETNKLLKVMEDRKVFLESAYYNSEDPNMPSYIKDIFDNGLPAD 236

Query: 154 FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAM 213
           F L+ ATTR      P      + I       E+++ I     K     + D+A   +  
Sbjct: 237 FRLVGATTRSPQEMCPAIRSRCVEIFFRSLTAEEIEDIADNTVKKIRFTIEDKAKVLVGK 296

Query: 214 RSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
                 R A  L++     A     K I  E  + 
Sbjct: 297 YCTN-GRDAVSLVQLSSGIALNEGRKEIKVEDMEW 330


>gi|313896921|ref|ZP_07830468.1| ATP-dependent protease, Lon family [Selenomonas sp. oral taxon 137
           str. F0430]
 gi|312974368|gb|EFR39836.1| ATP-dependent protease, Lon family [Selenomonas sp. oral taxon 137
           str. F0430]
          Length = 847

 Score = 75.9 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 61/274 (22%), Positives = 96/274 (35%), Gaps = 57/274 (20%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
            N+    + + LLRP+  +E  GQ  A  +L      AK  +    H+L  GPPG+GKTT
Sbjct: 162 ENIRLTQSVMELLRPQNFDEIIGQERAVRSL-----MAKLSSPYPQHLLLYGPPGVGKTT 216

Query: 70  LAQVVARELG----------------------VNFRSTSGPVIAKAGD---------LA- 97
            A++V                            + R  + P++    D         LA 
Sbjct: 217 AARLVLEAAKKRAVSPFGESAPFVETDGTTLRWDPRDMTNPLLGSVHDPIYQGAQKSLAD 276

Query: 98  --------ALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG-EGPSARSVK 148
                    L+T      +LFIDEI  +  +++  L   +ED +         P  + V 
Sbjct: 277 SGVPEPKPGLVTEAHGG-ILFIDEIGEMDEMLQNKLLKVLEDKRAYFESAYYDPDDKRVP 335

Query: 149 INLSR---------FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199
             + +         F LI ATTR     NP        I         +  IV+  A+  
Sbjct: 336 PYIKKLFEEGAPADFVLIGATTRDADHINPALRSRCAEIYFEPLTPAHILRIVENAARRL 395

Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
            + + +  A  I+  +    R A  +L      A
Sbjct: 396 HVTLGEGVAELISEYT-IEGRKAINILADAYSLA 428


>gi|228473203|ref|ZP_04057958.1| DNA polymerase III, subunits gamma and tau [Capnocytophaga
           gingivalis ATCC 33624]
 gi|228275353|gb|EEK14145.1| DNA polymerase III, subunits gamma and tau [Capnocytophaga
           gingivalis ATCC 33624]
          Length = 362

 Score = 75.9 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 62/259 (23%), Positives = 91/259 (35%), Gaps = 46/259 (17%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP++  +  GQ      L    E A A       +LF GP G+GKTT A+++A+++
Sbjct: 8   ARKYRPQSFVDVVGQKAITDTL----ENAIANDHLAQALLFTGPRGVGKTTCARILAKKI 63

Query: 79  G-------------VNFRSTSGPVIAKAGDLAALLT------NLEDRDVLFIDEIHRLSI 119
                          N              + +L+        +    V  IDE+H LS 
Sbjct: 64  NEKTTPTDGDNDFAFNIFELDAASNNSVEGIRSLIEQVRIPPQVGKYKVYIIDEVHMLSN 123

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
                    +E+          P A ++ I         ATT    +   +  R  I   
Sbjct: 124 AAFNAFLKTLEE----------PPAHAIFIL--------ATTEKHKVIPTILSRCQIFDF 165

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
                I D +  ++  AK  GL   DEA   IA ++ G  R A  +  RV  F      K
Sbjct: 166 KRI-TINDAREYLKYIAKEQGLEAEDEALQIIAQKADGAMRDALSIFDRVVSFC----GK 220

Query: 240 TITREIADAALLRLAIDKM 258
           TITR+     L  L  D  
Sbjct: 221 TITRQAVSEILNVLDYDTY 239


>gi|42783608|ref|NP_980855.1| ATP-dependent protease LA [Bacillus cereus ATCC 10987]
 gi|42739537|gb|AAS43463.1| ATP-dependent protease LA [Bacillus cereus ATCC 10987]
          Length = 557

 Score = 75.9 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 57/288 (19%), Positives = 97/288 (33%), Gaps = 56/288 (19%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           R +S  +     +RP +  +  GQ +   +LK     A        HV+  GPPG+GKT 
Sbjct: 52  REISLTEPLAEKVRPTSFLDIVGQEDGIKSLK-----AALCGPNPQHVIIYGPPGVGKTA 106

Query: 70  LAQVVARELGVNFRSTS----------------------GPVIAKAGD------------ 95
            A++V  E   N +S                         P+I    D            
Sbjct: 107 AARLVLEEAKRNPKSPFRTNATFIELDATTARFDERGIADPLIGSVHDPIYQGAGAMGQA 166

Query: 96  -----LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL----MVGEGPSARS 146
                    +T+     +LFIDEI  L  I    +   +ED ++ L       E     +
Sbjct: 167 GIPQPKKGAVTDAHGG-ILFIDEIGELHPIQMNKMLKVLEDRKVFLESAYYSEENTMIPT 225

Query: 147 VKINL------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
              ++      + F L+ ATTR      P      + +     + E+++ + +  A    
Sbjct: 226 YIHDIFQKGLPADFRLVGATTRSPDEIPPAIRSRCLEVFFRELDTEEIQKVAKNAADKVE 285

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           + + +     I M +R   R A  L++     A       I  E  + 
Sbjct: 286 MQIGENGIEMIGMYARN-GREAINLVQISAGMAINEERPFIKDEDIEW 332


>gi|45357990|ref|NP_987547.1| replication factor C small subunit [Methanococcus maripaludis S2]
 gi|50400879|sp|Q6M044|RFCS_METMP RecName: Full=Replication factor C small subunit; Short=RFC small
           subunit; AltName: Full=Clamp loader small subunit
 gi|44920747|emb|CAF29983.1| Replication factor C, small subunit [Methanococcus maripaludis S2]
          Length = 315

 Score = 75.9 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 52/240 (21%), Positives = 88/240 (36%), Gaps = 37/240 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP TL E  G  E    L  ++E      +++ H+LF G PG+GKTT A  +A+
Sbjct: 4   PWVEKYRPETLSEVVGHHEIIKRLTNYVE-----KKSMPHLLFSGSPGVGKTTAALALAK 58

Query: 77  ------------ELGVNFRSTSGPVIAKAGDLAALLT-NLEDRDVLFIDEIHRLSIIVEE 123
                       EL  +       +  K  D A           V+F+DE   L+   + 
Sbjct: 59  DLYGDTWRENFLELNSSDERGIDVIRTKVKDFARTKPIGDAPFKVIFLDESDALTSDAQN 118

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
            L   ME +                 ++ RF  I +      +  P+Q R  I  R +  
Sbjct: 119 ALRRTMEKYS----------------DICRF--ILSCNYPSKIIPPIQSRCAI-FRFSPL 159

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           + EDL   ++  ++   L +       I   S G  R A  +L+     ++    + + +
Sbjct: 160 KTEDLVENLKDISEKENLNLEKGGIDAIIYVSEGDMRKAINVLQTAAAVSDEITEEIVYK 219


>gi|298208941|ref|YP_003717120.1| DNA polymerase III subunit gamma/tau [Croceibacter atlanticus
           HTCC2559]
 gi|83848868|gb|EAP86737.1| DNA polymerase III subunit gamma/tau [Croceibacter atlanticus
           HTCC2559]
          Length = 600

 Score = 75.9 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 54/275 (19%), Positives = 87/275 (31%), Gaps = 43/275 (15%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T  +  GQ    + L   IE           +LF GP G+GKTT A+++A+++
Sbjct: 8   ARKYRPTTFADVVGQQAITNTLVNAIENNHLAQA----LLFTGPRGVGKTTCARILAKKI 63

Query: 79  G-------------VNFRSTSGPVIAKAGDLAALLT------NLEDRDVLFIDEIHRLSI 119
                          N             D+  L+        +    V  IDE+H LS 
Sbjct: 64  NQDGTDVAEDEDFAFNIFELDAASNNSVDDIRNLIDQVRIPPQVGHYKVYIIDEVHMLSQ 123

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
                    +E+                         I ATT    +   +  R  I   
Sbjct: 124 AAFNAFLKTLEE------------------PPKHAIFILATTEKHKIIPTILSRCQIFDF 165

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
                + D K  +   A+  G+   D+A   IA ++ G  R A  +  RV  F+     +
Sbjct: 166 KRI-TVTDAKQYLANIAEKEGVNAEDDALHIIAQKADGAMRDALSIYDRVVSFSGNNLTR 224

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARN 274
               E  +  L      +M    L+      + + 
Sbjct: 225 QAVTENLN-VLDYDTYFEMTDHILNNNIPEALVQF 258


>gi|307596341|ref|YP_003902658.1| AAA ATPase central domain-containing protein [Vulcanisaeta
           distributa DSM 14429]
 gi|307551542|gb|ADN51607.1| AAA ATPase central domain protein [Vulcanisaeta distributa DSM
           14429]
          Length = 435

 Score = 75.9 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 57/254 (22%), Positives = 90/254 (35%), Gaps = 41/254 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RPR L E   Q EA   L  +I   +    +   V+ VGPPG GKTTLA  +A 
Sbjct: 6   PWVEKYRPRRLSEVVNQEEAKKALLDWINDWEKGKPSKKAVMLVGPPGTGKTTLAYALAN 65

Query: 77  ELGVNFRSTSGPVIAKAGDLAAL---------LTNLEDRDVLFIDEIHRLSIIVEEILYP 127
           E G      +   +     +  +         L   + R +LF DE+  L++  +     
Sbjct: 66  ERGYEVLELNASDVRTGERIRQVMGGSMKMGSLFGFKGRIILF-DEVDGLNVREDRGGLA 124

Query: 128 AM-----EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           A+     E     +M    P     +                     L+D     I+L  
Sbjct: 125 AIVELIRESTWPIIMTANNPWDPKFRE--------------------LRDE-AEVIQLKP 163

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            + +D+ TI++R     G+   ++A   IA  S G  R A   L+     A     K +T
Sbjct: 164 LDEDDILTILRRICNAEGIKCEEDALKLIAESSGGDVRAAINDLQ-----AAAEGKKVLT 218

Query: 243 REIADAALLRLAID 256
           ++           D
Sbjct: 219 KDDVTVTERAHQFD 232


>gi|229198600|ref|ZP_04325302.1| ATP-dependent protease La [Bacillus cereus m1293]
 gi|228584882|gb|EEK42998.1| ATP-dependent protease La [Bacillus cereus m1293]
          Length = 557

 Score = 75.9 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 57/288 (19%), Positives = 97/288 (33%), Gaps = 56/288 (19%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           R +S  +     +RP +  +  GQ +   +LK     A        HV+  GPPG+GKT 
Sbjct: 52  REISLTEPLAEKVRPTSFLDIVGQEDGIKSLK-----AALCGPNPQHVIIYGPPGVGKTA 106

Query: 70  LAQVVARELGVNFRSTS----------------------GPVIAKAGD------------ 95
            A++V  E   N +S                         P+I    D            
Sbjct: 107 AARLVLEEAKRNPKSPFRTNATFIELDATTARFDERGIADPLIGSVHDPIYQGAGAMGQA 166

Query: 96  -----LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL----MVGEGPSARS 146
                    +T+     +LFIDEI  L  I    +   +ED ++ L       E     +
Sbjct: 167 GIPQPKKGAVTDAHGG-ILFIDEIGELHPIQMNKMLKVLEDRKVFLESAYYSEENTMIPT 225

Query: 147 VKINL------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
              ++      + F L+ ATTR      P      + +     + E+++ + +  A    
Sbjct: 226 YIHDIFQKGLPADFRLVGATTRSPDEIPPAIRSRCLEVFFRELDTEEIQKVAKNAADKVE 285

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           + + +     I M +R   R A  L++     A       I  E  + 
Sbjct: 286 MQIGENGIEMIGMYARN-GREAINLVQISAGMAINEERPFIKDEDIEW 332


>gi|118576898|ref|YP_876641.1| replication factor C small subunit [Cenarchaeum symbiosum A]
 gi|118195419|gb|ABK78337.1| replication factor C small subunit [Cenarchaeum symbiosum A]
          Length = 311

 Score = 75.9 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 87/240 (36%), Gaps = 36/240 (15%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR- 76
            +   RP+ L +   Q E   +    IEA    A  + H+LF G  G+GKTT A  +AR 
Sbjct: 2   WVEKYRPKKLADVVDQKEIIGS----IEALLKNAGEMPHLLFSGSAGVGKTTTALCIARQ 57

Query: 77  ----ELGVNFRSTSGPVIAKAGDLAALLTNLED--------RDVLFIDEIHRLSIIVEEI 124
                +  N    +       G +   +    +          ++ +DE   ++   +  
Sbjct: 58  VLGPHIQDNLLELNASDERGIGMVRDKVKRFSNFAAFEEIPFKIIILDEADEMTADAQTA 117

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           L   +ED                   + RF ++A    +  + +P+Q R  +    +  E
Sbjct: 118 LRRTIEDAS----------------KICRFIIVA--NNISKIIDPIQSRCAVYKFTSIPE 159

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            E +   +++ AK    ++ +E   E+  +S G  R A  +L+       V      T  
Sbjct: 160 KEAMAQ-LKKIAKGEKASIDEEGLKEVYEQSEGDLRHAINILQAAASSGAVTAESVRTSA 218


>gi|331005832|ref|ZP_08329187.1| DNA polymerase III subunits gamma and tau [gamma proteobacterium
           IMCC1989]
 gi|330420352|gb|EGG94663.1| DNA polymerase III subunits gamma and tau [gamma proteobacterium
           IMCC1989]
          Length = 740

 Score = 75.9 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 65/311 (20%), Positives = 102/311 (32%), Gaps = 61/311 (19%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPRT  E  GQ      L+  I A     + L H  LF G  G+GKTT+A+++A+ L   
Sbjct: 11  RPRTFREMVGQEHV---LQALINA--LDHDRLHHAYLFTGTRGVGKTTIARILAKCLNCE 65

Query: 82  FRSTS------------------------GPVIAKAGDLAALLTNLE------DRDVLFI 111
              +S                             K  D   LL N++         V  I
Sbjct: 66  VGVSSVPCNECSSCIEINEGRFVDLIEVDAASRTKVEDTRELLENVQYAPTRGRYKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSNSSFNALLKTLEE------------------PPPHVKFLLATTDPQKLPVTIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L     E + + +Q   +   +   D    ++A  + G+ R A  L  +   
Sbjct: 168 SRC-LQFNLKNMNPEKIVSHLQFVLEKEMVPFEDAGLWQLARSADGSMRDALSLTDQSIA 226

Query: 232 FAEVAHAKTITREIADAALLRLAIDKM-GFDQLDLR-YLTMIARNFGGGPVGIETISAGL 289
           F +        R +       L  D + G    D++  L+ +A      P      SA L
Sbjct: 227 FGDGKITDVDVRTMLGTIDQSLVYDVLKGLIAEDIKQLLSAVANLSEHSP----DYSAAL 282

Query: 290 SEPRDAIEDLI 300
           +E    +  + 
Sbjct: 283 AELIATLHRIA 293


>gi|298492637|ref|YP_003722814.1| DNA polymerase III subunits gamma and tau ['Nostoc azollae' 0708]
 gi|298234555|gb|ADI65691.1| DNA polymerase III, subunits gamma and tau ['Nostoc azollae' 0708]
          Length = 663

 Score = 75.9 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 46/242 (19%), Positives = 88/242 (36%), Gaps = 20/242 (8%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +      RP++  E  GQ    + L   I +AK         LF GP G GKT+ A+++A
Sbjct: 4   EPLHHKYRPKSFAELVGQEAITTTLTNAISSAKIA----PAYLFTGPRGTGKTSSARILA 59

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAME 130
           + L         P+     D+   +T     DV+ ID      +  +  ++E+  +  ++
Sbjct: 60  KSLNCLKSDKPTPIPCGVCDICQGITKGYSLDVIEIDAASNTGVDNIRELIEKAQFAPVQ 119

Query: 131 DFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
                 ++ E             ++++        + ATT    +   +  R        
Sbjct: 120 CRYKVYVIDECHMLSTAAFNALLKTLEEPPKYVVFVLATTDPQRVLPTIISRCQ-RFDFR 178

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA-EVAHAKT 240
              +E +   +   A    + +  +A   +A  S+G  R A  LL ++  F  EV   + 
Sbjct: 179 RIHLEAMVKHLGAIASKENINICLDAVTLVAQMSQGGLRDAESLLDQLALFPGEVIPDQV 238

Query: 241 IT 242
             
Sbjct: 239 WD 240


>gi|206975931|ref|ZP_03236841.1| ATP-dependent protease LonB [Bacillus cereus H3081.97]
 gi|222097917|ref|YP_002531974.1| ATP-dependent protease la [Bacillus cereus Q1]
 gi|229141212|ref|ZP_04269751.1| ATP-dependent protease La [Bacillus cereus BDRD-ST26]
 gi|206745683|gb|EDZ57080.1| ATP-dependent protease LonB [Bacillus cereus H3081.97]
 gi|221241975|gb|ACM14685.1| ATP-dependent protease LA [Bacillus cereus Q1]
 gi|228642253|gb|EEK98545.1| ATP-dependent protease La [Bacillus cereus BDRD-ST26]
          Length = 557

 Score = 75.9 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 57/288 (19%), Positives = 97/288 (33%), Gaps = 56/288 (19%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           R +S  +     +RP +  +  GQ +   +LK     A        HV+  GPPG+GKT 
Sbjct: 52  REISLTEPLAEKVRPTSFLDIVGQEDGIKSLK-----AALCGPNPQHVIIYGPPGVGKTA 106

Query: 70  LAQVVARELGVNFRSTS----------------------GPVIAKAGD------------ 95
            A++V  E   N +S                         P+I    D            
Sbjct: 107 AARLVLEEAKRNPKSPFRTNATFIELDATTARFDERGIADPLIGSVHDPIYQGAGAMGQA 166

Query: 96  -----LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL----MVGEGPSARS 146
                    +T+     +LFIDEI  L  I    +   +ED ++ L       E     +
Sbjct: 167 GIPQPKKGAVTDAHGG-ILFIDEIGELHPIQMNKMLKVLEDRKVFLESAYYSEENTMIPT 225

Query: 147 VKINL------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
              ++      + F L+ ATTR      P      + +     + E+++ + +  A    
Sbjct: 226 YIHDIFQKGLPADFRLVGATTRSPEEIPPAIRSRCLEVFFRELDTEEIQKVAKNAADKVE 285

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           + + +     I M +R   R A  L++     A       I  E  + 
Sbjct: 286 MQIGENGIEMIGMYARN-GREAINLVQISAGMAINEERPFIKDEDIEW 332


>gi|47566661|ref|ZP_00237483.1| ATP-dependent protease La [Bacillus cereus G9241]
 gi|228987723|ref|ZP_04147834.1| ATP-dependent protease La [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229158088|ref|ZP_04286158.1| ATP-dependent protease La [Bacillus cereus ATCC 4342]
 gi|47556691|gb|EAL15023.1| ATP-dependent protease La [Bacillus cereus G9241]
 gi|228625407|gb|EEK82164.1| ATP-dependent protease La [Bacillus cereus ATCC 4342]
 gi|228771997|gb|EEM20452.1| ATP-dependent protease La [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 557

 Score = 75.9 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 57/288 (19%), Positives = 97/288 (33%), Gaps = 56/288 (19%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           R +S  +     +RP +  +  GQ +   +LK     A        HV+  GPPG+GKT 
Sbjct: 52  REISLTEPLAEKVRPTSFLDIVGQEDGIKSLK-----AALCGPNPQHVIIYGPPGVGKTA 106

Query: 70  LAQVVARELGVNFRSTS----------------------GPVIAKAGD------------ 95
            A++V  E   N +S                         P+I    D            
Sbjct: 107 AARLVLEEAKRNPKSPFRTNATFIELDATTARFDERGIADPLIGSVHDPIYQGAGAMGQA 166

Query: 96  -----LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL----MVGEGPSARS 146
                    +T+     +LFIDEI  L  I    +   +ED ++ L       E     +
Sbjct: 167 GIPQPKKGAVTDAHGG-ILFIDEIGELHPIQMNKMLKVLEDRKVFLESAYYSEENTMIPT 225

Query: 147 VKINL------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
              ++      + F L+ ATTR      P      + +     + E+++ + +  A    
Sbjct: 226 YIHDIFQKGLPADFRLVGATTRSPEEIPPAIRSRCLEVFFRELDTEEIQKVAKNAADKVE 285

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           + + +     I M +R   R A  L++     A       I  E  + 
Sbjct: 286 MQIGENGIEMIGMYARN-GREAINLVQISAGMAINEERPFIKDEDIEW 332


>gi|269798692|ref|YP_003312592.1| DNA polymerase III subunits gamma/tau [Veillonella parvula DSM
           2008]
 gi|269095321|gb|ACZ25312.1| DNA polymerase III, subunits gamma and tau [Veillonella parvula DSM
           2008]
          Length = 895

 Score = 75.9 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 52/244 (21%), Positives = 90/244 (36%), Gaps = 25/244 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP+T  +  GQ +    L   I   K         LF GP G GKT++A++ AR
Sbjct: 5   ALYRKYRPQTFTDVVGQHQVSDTLMRAIREDKVAHAY----LFAGPRGTGKTSMAKIFAR 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR--DVLFID-----EIHRLSIIVEEILYPAM 129
            +        GP      + +A  + L  +  DVL ID      I  +  + E + +  +
Sbjct: 61  AINCEH----GPTDHPCNECSACRSILSGQSMDVLEIDAASNRGIDEVRALRESVKFMPV 116

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           E  +   ++ E             ++++   +    I ATT +  L   +  R       
Sbjct: 117 EGRKKVFIIDEAHMLTTEAWNALLKTIEEPPAHVMFIFATTEIEKLPVTIVSRCQRYTFR 176

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
                +D+   +   A+  G  +   AA  IA+ + G  R A  +L +    A  +    
Sbjct: 177 RI-TSDDIAQRLSYVAEKEGFDLDSAAAQLIAVHADGGLRDALSILDQCAGMATGSITPQ 235

Query: 241 ITRE 244
           +  E
Sbjct: 236 VVEE 239


>gi|72080595|ref|YP_287653.1| DNA polymerase III subunits gamma and tau [Mycoplasma hyopneumoniae
           7448]
          Length = 719

 Score = 75.9 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 42/240 (17%), Positives = 76/240 (31%), Gaps = 50/240 (20%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
              RP+   +  GQ     +LK  I++           LF GP G GKTT+A++ A  + 
Sbjct: 10  RKYRPKKFSDIVGQKFLLESLKNIIKS----GNFFHAYLFSGPHGTGKTTVAKIFANAIN 65

Query: 80  VNFRS---------------------TSGPVIAKAGDLAALLTN------LEDRDVLFID 112
              ++                               ++  ++ N      +    +  +D
Sbjct: 66  CTHKTDLIEPCQNCIKNFNNSLDIIEMDAASHNGVKEIREIIENSINFPQISPYKIYILD 125

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS          +E+                         I ATT V  +   +  
Sbjct: 126 EVHMLSTSAFNAFLKTLEE------------------PPKHMIFILATTEVHKIPLTILS 167

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R      L   E E +   ++   +   +     A   + + S+G+ R A  +L +V  F
Sbjct: 168 RVQRYNFLALKEDE-ICHRLEFILEKERIKYEKNALKSVFLLSQGSLRDAISILEQVATF 226


>gi|292669341|ref|ZP_06602767.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
 gi|292648976|gb|EFF66948.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
          Length = 700

 Score = 75.9 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 61/277 (22%), Positives = 93/277 (33%), Gaps = 63/277 (22%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
            N+    + + LLRP+  +E  GQ  A  +L      AK  +    H+L  GPPG+GKTT
Sbjct: 162 ENIHLTQSVMELLRPQNFDEIVGQERAVRSL-----MAKLSSPYPQHLLLYGPPGVGKTT 216

Query: 70  LAQVVARELG----------------------VNFRSTSGPVIAKAGD---------LA- 97
            A++V                            + R  + P++    D         LA 
Sbjct: 217 AARLVLEAAKRRAVSPFGEDAPFVETDGTTLRWDPRDMTNPLLGSVHDPIYQGAQKNLAD 276

Query: 98  --------ALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKI 149
                    L+T+     +LFIDEI  +  +++  L   +ED +      E         
Sbjct: 277 SGVPEPKPGLVTDAHGG-ILFIDEIGEMDEMLQNKLLKVLEDKRAYF---ESAYYDPDDK 332

Query: 150 NLSR-------------FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA 196
            +               F LI ATTR     NP        I         + TIV+  A
Sbjct: 333 RVPPYIRKLFEEGAPADFVLIGATTREPDHVNPALRSRCAEIYFEPLTPAHILTIVENAA 392

Query: 197 KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
           +   + +    A E+        R A  +L      A
Sbjct: 393 ERLNVTLAP-GAAELISAYTIEGRKAINILADAYSLA 428


>gi|289620609|emb|CBI52970.1| unnamed protein product [Sordaria macrospora]
          Length = 387

 Score = 75.9 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 55/273 (20%), Positives = 95/273 (34%), Gaps = 49/273 (17%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           ++   +    +   RP+TL + T Q    + L+  ++A       L H+LF GPPG GKT
Sbjct: 25  TKETPRAQPWVEKYRPKTLSDVTAQDHTITVLQRTLQA-----TNLPHMLFYGPPGTGKT 79

Query: 69  TLAQVVAR-------------ELGVNFRSTSGPVIAKAGDLAAL-LTNLE---------- 104
           +    +A+             EL  +       V  K  D A + LTN            
Sbjct: 80  STILALAKELYGPELIKSRVLELNASDERGISIVREKVKDFARMQLTNPSAAYKARYPCP 139

Query: 105 DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164
              ++ +DE   ++   +  L   ME +                  ++RF        V 
Sbjct: 140 PFKIIILDEADSMTQDAQSALRRTMETYS----------------KITRF--CLICNYVT 181

Query: 165 LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGR 224
            + +PL  R     R    +  + K  ++  A+L G+ + + A   +   S G  R A  
Sbjct: 182 RIIDPLASRCS-KFRFKSLDQGNAKKRLEEIAQLEGVGLEEGAVDALIKCSEGDLRKAIT 240

Query: 225 LLR-RVRDFAEVAHAKTITREIADAALLRLAID 256
            L+   R    VA       +        + +D
Sbjct: 241 YLQSAARLVGAVAATAKDGEQKEGEGGDEMEVD 273


>gi|258424489|ref|ZP_05687366.1| DNA polymerase III [Staphylococcus aureus A9635]
 gi|257845084|gb|EEV69121.1| DNA polymerase III [Staphylococcus aureus A9635]
          Length = 565

 Score = 75.9 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 51/258 (19%), Positives = 95/258 (36%), Gaps = 25/258 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RP++ E+  GQ      L+  I   K         +F GP G GKT++A+V A+
Sbjct: 5   ALYRMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAY----IFSGPRGTGKTSIAKVFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +     +   P       +   +T   + DV+ ID      +  +  I +++ Y   E 
Sbjct: 61  AINCLNSTDGEPCNEC--HICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSES 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++   +    I ATT    +   +  R         
Sbjct: 119 KYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISR-AQRFDFKA 177

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE----VAHA 238
             ++ +   ++  A    +   +EA   IA  S G  R A  ++ +   F +    +  A
Sbjct: 178 ISLDQIVERLKFVADAQQIEYEEEALAFIAKASEGGMRDALSIMDQAIAFGDGTLTLQDA 237

Query: 239 KTITREIADAALLRLAID 256
             +T  + D AL  L  D
Sbjct: 238 LNVTGSVHDEALNHLFDD 255


>gi|71893604|ref|YP_279050.1| DNA polymerase III subunits gamma and tau [Mycoplasma hyopneumoniae
           J]
          Length = 715

 Score = 75.5 bits (184), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 42/240 (17%), Positives = 76/240 (31%), Gaps = 50/240 (20%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
              RP+   +  GQ     +LK  I++           LF GP G GKTT+A++ A  + 
Sbjct: 10  RKYRPKKFSDIVGQKFLLESLKNIIKS----GNFFHAYLFSGPHGTGKTTVAKIFANAIN 65

Query: 80  VNFRS---------------------TSGPVIAKAGDLAALLTN------LEDRDVLFID 112
              ++                               ++  ++ N      +    +  +D
Sbjct: 66  CTHKTDLIEPCQNCIKNFNNSLDIIEMDAASHNGVKEIREIIENSINFPQISPYKIYILD 125

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS          +E+                         I ATT V  +   +  
Sbjct: 126 EVHMLSTSAFNAFLKTLEE------------------PPKHMIFILATTEVHKIPLTILS 167

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R      L   E E +   ++   +   +     A   + + S+G+ R A  +L +V  F
Sbjct: 168 RVQRYNFLALKEDE-ICHRLEFILEKEKIKYEKNALKSVFLLSQGSLRDAISILEQVATF 226


>gi|54020353|ref|YP_115637.1| DNA polymerase III subunits gamma and tau [Mycoplasma hyopneumoniae
           232]
 gi|53987526|gb|AAV27727.1| DNA polymerase III gamma-tau subunits [Mycoplasma hyopneumoniae
           232]
          Length = 726

 Score = 75.5 bits (184), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 42/240 (17%), Positives = 76/240 (31%), Gaps = 50/240 (20%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
              RP+   +  GQ     +LK  I++           LF GP G GKTT+A++ A  + 
Sbjct: 17  RKYRPKKFSDIVGQKFLLESLKNIIKS----GNFFHAYLFSGPHGTGKTTVAKIFANAIN 72

Query: 80  VNFRS---------------------TSGPVIAKAGDLAALLTN------LEDRDVLFID 112
              ++                               ++  ++ N      +    +  +D
Sbjct: 73  CTHKTDLIEPCQNCIKNFNNSLDIIEMDAASHNGVKEIREIIENSINFPQISPYKIYILD 132

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS          +E+                         I ATT V  +   +  
Sbjct: 133 EVHMLSTSAFNAFLKTLEE------------------PPKHMIFILATTEVHKIPLTILS 174

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R      L   E E +   ++   +   +     A   + + S+G+ R A  +L +V  F
Sbjct: 175 RVQRYNFLALKEDE-ICHRLEFILEKEKIKYEKNALKSVFLLSQGSLRDAISILEQVATF 233


>gi|305663891|ref|YP_003860179.1| replication factor C small subunit [Ignisphaera aggregans DSM
           17230]
 gi|304378460|gb|ADM28299.1| replication factor C small subunit [Ignisphaera aggregans DSM
           17230]
          Length = 323

 Score = 75.5 bits (184), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 61/295 (20%), Positives = 101/295 (34%), Gaps = 46/295 (15%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E       RP+TL E   Q E  + L  F+E      + + H+LF GPPG GKTT A  +
Sbjct: 2   ELLWAEKYRPKTLREIVNQEEIVNRLMKFVE-----EKNMPHLLFAGPPGTGKTTAALAL 56

Query: 75  AR------------ELGVNFRSTSGPVIAKAGDLAA-LLTNLEDRDVLFIDEIHRLSIIV 121
           A             EL  +       + +K  + A   L       ++ +DE   ++   
Sbjct: 57  AHDLYGDEWRRYLLELNASDERGIAVIRSKVKEFARSKLPGDIPFKIVILDEADNMTADA 116

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           ++ L   ME +                   +RF LIA       + +P+Q R     R  
Sbjct: 117 QQALRRIMEMYVET----------------TRFILIA--NYPSKIIDPIQSRCA-SFRFT 157

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
             + ED+ + ++   +   +   ++    I   S G  R A  +L+      EV  +   
Sbjct: 158 PLKREDVTSRLRWICEQEKVKCDEDGLDVIYELSGGDMRKAINILQSASALGEVTVSNVY 217

Query: 242 TREIADAALLRLAIDKMGF-----DQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
                        I  +       +  D  +  MI      G  G++ I     E
Sbjct: 218 KVVGLAHPKEVREIITLALSGKFIEARDKLHNLMIV----YGLSGVDIIKQMHRE 268


>gi|325685702|gb|EGD27781.1| DNA polymerase III, gamma/tau subunit DnaX [Lactobacillus
           delbrueckii subsp. lactis DSM 20072]
          Length = 607

 Score = 75.5 bits (184), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 64/342 (18%), Positives = 104/342 (30%), Gaps = 63/342 (18%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV-- 80
           RPRT ++  GQ      LK     +  R +     LF GP G GKT+ A++ A+ L    
Sbjct: 11  RPRTFDDVVGQEAITDTLK----NSLIRGKVSHAFLFAGPRGTGKTSCAKIFAKALNCLN 66

Query: 81  ----------------------NFRSTSGPVIAKAGDLAALLTNL------EDRDVLFID 112
                                 +             ++  LL  +          V  ID
Sbjct: 67  LQEGEPCNECSNCLDADQGAMPDIVEMDAASNNSVDEIRDLLDKVHYAPTEGKYKVYIID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LSI     L   +E+          P A  V I         ATT +  +   +  
Sbjct: 127 EVHMLSISAFNALLKTLEE----------PPASVVFIL--------ATTELQKVPATIIS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R        F   E +   ++      G+   D+A   IA  + G  R A  +L ++  F
Sbjct: 169 RTQRYNFKRF-SNEAMVQRMEYILGQEGVEYEDKALKVIAQVADGGMRDALSILDQLLSF 227

Query: 233 AEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEP 292
                    +    + AL           +   + L  +        + +   +      
Sbjct: 228 -------EKSSVRYEDALEVTGF---AAQEQVEKLLLALLNGDSQTALDLAKSAIQDGAS 277

Query: 293 RDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
              I + I    +Q     +T +G  L     Q +    P R
Sbjct: 278 AQNILNEIISLTVQAMLFTKTGQGEFLTDDFAQEIAQQSPDR 319


>gi|296393301|ref|YP_003658185.1| DNA polymerase III subunits gamma and tau [Segniliparus rotundus
           DSM 44985]
 gi|296180448|gb|ADG97354.1| DNA polymerase III, subunits gamma and tau [Segniliparus rotundus
           DSM 44985]
          Length = 664

 Score = 75.5 bits (184), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 46/236 (19%), Positives = 82/236 (34%), Gaps = 23/236 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP  L++  GQ      L V +EA +         LF GP G GKT+LA+++AR
Sbjct: 2   ALYRRYRPERLDQVLGQEHVTKPLSVALEAGRLGHAY----LFSGPRGCGKTSLARILAR 57

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAM 129
            +      T+ P      +    L       +  I+        +     + +   Y   
Sbjct: 58  SVNCEKGPTANP--CGVCESCRALAEGGPGSIDVIELDAASHGGVDDTRDLRDRAFYAPA 115

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
              +   ++ E             + V+        + ATT    +   ++ R       
Sbjct: 116 RSAKRVFIIDEAHMVTTAGFNALLKIVEEPPPHLIFVFATTEPEKVLPTIRSR-THHYPF 174

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
                + L+ ++   A    +AV  +    +   S G+PR A  +L ++   AE A
Sbjct: 175 RLLPPKTLRELLANVAHAEQVAVEPDVYPLVIRASGGSPRDALSILDQLMAGAENA 230


>gi|160878207|ref|YP_001557175.1| DNA polymerase III, subunits gamma and tau [Clostridium
           phytofermentans ISDg]
 gi|160426873|gb|ABX40436.1| DNA polymerase III, subunits gamma and tau [Clostridium
           phytofermentans ISDg]
          Length = 522

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 89/230 (38%), Gaps = 21/230 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T E+  GQ    + LK  I+A +         LF G  G GKTT+A+++A+
Sbjct: 5   ALYRKFRPDTFEDVKGQDHIVTTLKNQIKAKRIGHAY----LFCGTRGTGKTTVAKILAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +         P    A  +   + +    +V+ ID      +  +  IVEE+ Y   E 
Sbjct: 61  TVNCEHPIDGNPCNECA--MCKAIQSQSSMNVIEIDAASNNGVDNIREIVEEVKYSPTEG 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++   S    I ATT V  +   +  R         
Sbjct: 119 NYKVYIIDEVHMLSAGAFNALLKTLEEPPSYVIFILATTEVHKIPITILSRCQRYDFRRV 178

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
             I+++   ++   +  G+   ++A   +A  + G+ R A  LL +   F
Sbjct: 179 -TIDEITKRLRVITEKEGIEAEEKALRYVARAADGSFRDALSLLDQCIAF 227


>gi|223043407|ref|ZP_03613453.1| DNA polymerase III subunit gamma/tau [Staphylococcus capitis SK14]
 gi|222443196|gb|EEE49295.1| DNA polymerase III subunit gamma/tau [Staphylococcus capitis SK14]
          Length = 568

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 84/234 (35%), Gaps = 21/234 (8%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RP++ ++  GQ      L+  I   K         +F GP G GKT++A+V A+
Sbjct: 5   ALYRMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAY----IFSGPRGTGKTSIAKVFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +         P    A  +   +T   + DV+ ID      +  +  I +++ Y   E 
Sbjct: 61  AINCLNSDDGEPCNECA--ICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSES 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++   S    I ATT    +   +  R         
Sbjct: 119 KYKVYIIDEVHMLTTGAFNALLKTLEEPPSHAIFILATTEPHKIPPTIISR-AQRFDFKA 177

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
             +  +   ++  A+   L   + A   IA  S G  R A  ++ +   F +  
Sbjct: 178 ISMNQIVDRLKFVAESQSLEYDNAALEFIAKTSEGGMRDALSIMDQAIAFGDER 231


>gi|238018439|ref|ZP_04598865.1| hypothetical protein VEIDISOL_00266 [Veillonella dispar ATCC 17748]
 gi|237864910|gb|EEP66200.1| hypothetical protein VEIDISOL_00266 [Veillonella dispar ATCC 17748]
          Length = 922

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 63/301 (20%), Positives = 109/301 (36%), Gaps = 41/301 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP+T  +  GQ +    L   I   K         LF GP G GKT++A++ AR
Sbjct: 5   ALYRKYRPQTFTDVVGQHQVSDTLMRAIREDKVAHAY----LFAGPRGTGKTSMAKIFAR 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR--DVLFID-----EIHRLSIIVEEILYPAM 129
            +        GP      + +A  + L  +  DVL ID      I  +  + E + +  +
Sbjct: 61  AINCEH----GPTDHPCNECSACKSILSGQSMDVLEIDAASNRGIDEVRALRESVKFMPV 116

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           E  +   ++ E             ++++   +    I ATT +  L   +  R       
Sbjct: 117 EGRKKVFIIDEAHMLTTEAWNALLKTIEEPPAHVMFIFATTEIEKLPVTIVSRCQRYTFR 176

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
                +D+   +   A+  G  +   AA  IA+ + G  R A  +L +    A       
Sbjct: 177 RI-TSDDIAQRLSYVAEKEGFGLDPAAAQLIAVHADGGLRDALSILDQCAGMATGTITPQ 235

Query: 241 ITREIADAALLRLAIDKMGFDQLD--LRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
           +  E+             G    +  + +L  +    G GP  +  I   L+E RDA + 
Sbjct: 236 VVEELI------------GLVSKEWIIHFLDALRN--GDGPKLLSYIHDALAEGRDATQI 281

Query: 299 L 299
           +
Sbjct: 282 M 282


>gi|256370652|ref|YP_003108477.1| N terminal region of DNA polymerase III subunit gamma [Candidatus
           Sulcia muelleri SMDSEM]
 gi|256009444|gb|ACU52804.1| N terminal region of DNA polymerase III, gamma subunit [Candidatus
           Sulcia muelleri SMDSEM]
          Length = 347

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 77/222 (34%), Gaps = 39/222 (17%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG---- 79
           PR  EE  GQ      LK  IE    +       LF GP G+GKTT A+++AR++     
Sbjct: 12  PRDFEEVIGQKNITETLKKAIE----KKMLSKSFLFCGPRGVGKTTCAKILARKVNNFSD 67

Query: 80  ------VNFRSTSGPVIAKAGDLAALLT------NLEDRDVLFIDEIHRLSIIVEEILYP 127
                  N             D+  ++             V  IDE+H LS         
Sbjct: 68  EEKNSMFNIIELDAASNNSVDDIRNIINQVNFRPQYGKYKVYIIDEVHMLSNSAFNAFLK 127

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
            +ED                    S    I ATT    + + +  R  +    N   + +
Sbjct: 128 ILED------------------PPSHVIFILATTEKNKILSTIISRCQV-YDFNRISVNE 168

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           +   + +  K  G+   ++A   I+  S G+ R A  +  ++
Sbjct: 169 ITNYLIKICKKEGIEFEEDALLLISEISDGSLRDALSIFDKL 210


>gi|144575348|gb|AAZ53630.2| DNA polymerase III gamma and tau subunit [Mycoplasma hyopneumoniae
           7448]
          Length = 721

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/240 (17%), Positives = 76/240 (31%), Gaps = 50/240 (20%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
              RP+   +  GQ     +LK  I++           LF GP G GKTT+A++ A  + 
Sbjct: 12  RKYRPKKFSDIVGQKFLLESLKNIIKS----GNFFHAYLFSGPHGTGKTTVAKIFANAIN 67

Query: 80  VNFRS---------------------TSGPVIAKAGDLAALLTN------LEDRDVLFID 112
              ++                               ++  ++ N      +    +  +D
Sbjct: 68  CTHKTDLIEPCQNCIKNFNNSLDIIEMDAASHNGVKEIREIIENSINFPQISPYKIYILD 127

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS          +E+                         I ATT V  +   +  
Sbjct: 128 EVHMLSTSAFNAFLKTLEE------------------PPKHMIFILATTEVHKIPLTILS 169

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R      L   E E +   ++   +   +     A   + + S+G+ R A  +L +V  F
Sbjct: 170 RVQRYNFLALKEDE-ICHRLEFILEKERIKYEKNALKSVFLLSQGSLRDAISILEQVATF 228


>gi|144227535|gb|AAZ44339.2| DNA polymerase III gamma and tau subunit [Mycoplasma hyopneumoniae
           J]
          Length = 717

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/240 (17%), Positives = 76/240 (31%), Gaps = 50/240 (20%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
              RP+   +  GQ     +LK  I++           LF GP G GKTT+A++ A  + 
Sbjct: 12  RKYRPKKFSDIVGQKFLLESLKNIIKS----GNFFHAYLFSGPHGTGKTTVAKIFANAIN 67

Query: 80  VNFRS---------------------TSGPVIAKAGDLAALLTN------LEDRDVLFID 112
              ++                               ++  ++ N      +    +  +D
Sbjct: 68  CTHKTDLIEPCQNCIKNFNNSLDIIEMDAASHNGVKEIREIIENSINFPQISPYKIYILD 127

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS          +E+                         I ATT V  +   +  
Sbjct: 128 EVHMLSTSAFNAFLKTLEE------------------PPKHMIFILATTEVHKIPLTILS 169

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R      L   E E +   ++   +   +     A   + + S+G+ R A  +L +V  F
Sbjct: 170 RVQRYNFLALKEDE-ICHRLEFILEKEKIKYEKNALKSVFLLSQGSLRDAISILEQVATF 228


>gi|83589394|ref|YP_429403.1| AAA ATPase [Moorella thermoacetica ATCC 39073]
 gi|83572308|gb|ABC18860.1| AAA ATPase [Moorella thermoacetica ATCC 39073]
          Length = 572

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 65/289 (22%), Positives = 99/289 (34%), Gaps = 58/289 (20%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           R +S  +      RP T  E  GQ E    L+     A        HV+  GPPG+GKT 
Sbjct: 56  REISLTEPLAEKTRPSTFAEIIGQEEGLKALR-----AALCGPNPQHVIIYGPPGVGKTA 110

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR----------------------- 106
            A++V  E   N  S      AK  ++    +  ++R                       
Sbjct: 111 AARLVLEEAKANPLSPF-KENAKFVEVDGATSRFDERGIADPLIGSVHDPIYQGAGPMGM 169

Query: 107 ----------------DVLFIDEIHRLSIIVEEILYPAMEDFQLDL----MVGEGPSARS 146
                            +LFIDEI  L  I    L   +ED ++ L       E  +  S
Sbjct: 170 AGIPQPKPGAVTRAHGGILFIDEIGELHPIQINKLLKVLEDRKVILESAYYSSEDTNIPS 229

Query: 147 VKINLSR------FTLIAATTRV-GLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199
              ++ R      F L+ ATTR+   +   ++ R            E +  IVQ  A+  
Sbjct: 230 HIHDIFRNGLPADFRLVGATTRLPQEIPAAIRSRCQEIYFRPLLPHE-IGLIVQNAARKI 288

Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
            L +  E A E+  +     R A  +++     A     + ITR   + 
Sbjct: 289 NLHIAPE-AVEVIKQYATNGREAVNMVQLAAGLALTDRRQEITRADIEW 336


>gi|212550986|ref|YP_002309303.1| DNA polymerase III gamma and tau subunit [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212549224|dbj|BAG83892.1| DNA polymerase III gamma and tau subunit [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 471

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 80/230 (34%), Gaps = 20/230 (8%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T +   GQ    + LK  I+ +K         LF GP G+GKTT A++ A+ +
Sbjct: 8   ARRYRPATFQSVVGQRPLITTLKNAIQNSKLAHAY----LFCGPRGVGKTTCARIFAKTI 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII-----VEEILYPAMEDFQ 133
                   G    +  D           ++  +D     S+       E++  P      
Sbjct: 64  NCTCLKEDGEACNEC-DFCQSFNENRSHNIYELDAASNNSVENIRFLTEQMRIPPQIGHY 122

Query: 134 LDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
              ++ E             ++++        I ATT    +   +  R  I        
Sbjct: 123 KVYIIDEVHMLSTSAFNAFLKTLEEPPHHAMFILATTEKYKIIPTILSRCQIYDFSRI-T 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
           I D+   ++  A+   ++   EA   IA ++ G  R A  +  RV  F+ 
Sbjct: 182 INDIVEYLEYIAQNENISTEREALNIIAQKADGGMRDALSIFDRVASFSA 231


>gi|149371395|ref|ZP_01890881.1| DNA polymerase III subunit gamma/tau [unidentified eubacterium
           SCB49]
 gi|149355533|gb|EDM44092.1| DNA polymerase III subunit gamma/tau [unidentified eubacterium
           SCB49]
          Length = 361

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 78/233 (33%), Gaps = 41/233 (17%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T ++  GQ    S L    E A         +LF GP G+GKT+ A+++A+++
Sbjct: 8   ARKYRPTTFKQVVGQQAITSTL----ENAIDNNHLAQALLFTGPRGVGKTSCARILAKKI 63

Query: 79  G------------VNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSII 120
                         N             D+  L   +          V  IDE+H LS  
Sbjct: 64  NSDGTEKEDEDFAFNIFELDAASNNSVDDIRNLTDQVRIPPQTGKYKVYIIDEVHMLSSA 123

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                   +E+                         I ATT    +   +  R  I    
Sbjct: 124 AFNAFLKTLEE------------------PPKHAIFILATTEKHKIIPTILSRCQI-FDF 164

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
               ++D+K  ++  A    +   D+A   IA ++ G  R A  +  RV  F+
Sbjct: 165 RRITVQDIKGHLKDVANAENVNAEDDALHIIAQKADGALRDALSIFDRVVSFS 217


>gi|331268211|ref|YP_004394703.1| Sporulation protease LonC [Clostridium botulinum BKT015925]
 gi|329124761|gb|AEB74706.1| Sporulation protease LonC [Clostridium botulinum BKT015925]
          Length = 635

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 59/261 (22%), Positives = 97/261 (37%), Gaps = 57/261 (21%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +  +S+LRP++  E  GQ  A  +L      +K  +    H++  GPPG+GKTT A++  
Sbjct: 163 NNILSMLRPQSFSEIVGQERAIKSL-----VSKLASPYPQHIILYGPPGVGKTTAARLAL 217

Query: 76  RELG----------------------VNFRSTSGPVIAKA---------GDLAAL----- 99
            E+                        + R  + P++             DLA +     
Sbjct: 218 EEVKKIKHTPFDEDGKFVEVDGTTLRWDPREITNPLLGSVHDPIYQGSKRDLAEIGVPEP 277

Query: 100 ----LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL----------DLMVGEGPSAR 145
               +T      VLFIDEI  L  I++  L   +ED ++          D  + +     
Sbjct: 278 KPGLVTEAHGG-VLFIDEIGELDDILQNKLLKVLEDKRVEFSSSYYDPDDENIPKYIKYL 336

Query: 146 SVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTD 205
                 + F LI ATTR     NP        +       +D++ IV+  A    + + D
Sbjct: 337 FENGAPADFVLIGATTREPKDINPALRSRCTEVYFEPLSSKDVENIVEDAAGRLNIKLED 396

Query: 206 EAACEIAMRSRGTPRIAGRLL 226
             +  I+  +    R A  LL
Sbjct: 397 GVSTLISKYT-VEGRKAVNLL 416


>gi|229087036|ref|ZP_04219190.1| ATP-dependent protease La [Bacillus cereus Rock3-44]
 gi|228696299|gb|EEL49130.1| ATP-dependent protease La [Bacillus cereus Rock3-44]
          Length = 556

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 55/288 (19%), Positives = 100/288 (34%), Gaps = 56/288 (19%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           R +S  +     +RP +  +  GQ +   +LK     A        HV+  GPPG+GKT 
Sbjct: 51  REISLTEPLAEKVRPTSFLDIVGQEDGIKSLK-----AALCGPNPQHVIIYGPPGVGKTA 105

Query: 70  LAQVV---ARELGVNFRSTSG-------------------PVIAKAGD------------ 95
            A++V   A++   +    +                    P+I    D            
Sbjct: 106 AARLVLEEAKKNQKSPFRMNATFIELDATTARFDERGIADPLIGSVHDPIYQGAGAMGQA 165

Query: 96  -----LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL----MVGEGPSARS 146
                    +T+     +LFIDEI  L  I    +   +ED ++ L       E     +
Sbjct: 166 GIPQPKKGAVTDAHGG-ILFIDEIGELHPIQMNKMLKVLEDRKVFLESAYYSEENSMIPT 224

Query: 147 VKINL------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
              ++      + F L+ ATTR      P      + +     + E+++ + +  A+   
Sbjct: 225 YIHDIFQKGLPADFRLVGATTRSPDEIPPAIRSRCLEVFFRELDTEEIQKVAKNAAEKVE 284

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           + + ++    I M +R   R A  L++     A       I  E  + 
Sbjct: 285 MEIGEQGIELIGMYARN-GREAINLVQISAGMAINEGRSFIKDEDIEW 331


>gi|57642154|ref|YP_184632.1| replication factor C large subunit [Thermococcus kodakarensis KOD1]
 gi|62287361|sp|Q5JHP1|RFCL_PYRKO RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|57160478|dbj|BAD86408.1| replication factor C, large subunit [Thermococcus kodakarensis
           KOD1]
          Length = 499

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 81/225 (36%), Gaps = 29/225 (12%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEA-LDHVLFVGPPGLGKTTLAQV 73
           E   +   RPR L E   Q +A   ++ ++EA           +L  GPPG+GKTT    
Sbjct: 3   EVPWVEKYRPRKLSEIVNQEKALEQVRAWVEAWLHGNPPKKKALLLAGPPGVGKTTTVYA 62

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILY 126
           +A E G      +         +   +          + R ++F+DE   +         
Sbjct: 63  LANEYGFEVIELNASDERTYEKIERYVQAAYTMDILGKRRKLIFLDEADNIEPS------ 116

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
                         G    +  I+ +R  +I +      +   ++++  I       + +
Sbjct: 117 --------------GAREIAKLIDKARNPIIMSANHYWEVPREIRNKAQIVEYKRLTQRD 162

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            +K +V R  K  GL V  E   EIA R+ G  R A   L+ V  
Sbjct: 163 IIKALV-RILKREGLEVPKEVLYEIAKRANGDLRAAVNDLQTVVT 206


>gi|296109834|ref|YP_003616783.1| Replication factor C [Methanocaldococcus infernus ME]
 gi|295434648|gb|ADG13819.1| Replication factor C [Methanocaldococcus infernus ME]
          Length = 749

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 10/107 (9%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   +   RP+TL+E  GQ E    LK +++      +++ H+LF GPPG+GKTT A  +
Sbjct: 2   EQPWVEKYRPKTLDEIVGQEEIVKRLKNYVK-----RKSMPHLLFSGPPGVGKTTAALCL 56

Query: 75  ARE-----LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHR 116
           AR+        NF   +  V      L  +   ++      +D+++ 
Sbjct: 57  ARDLFGENWRENFLELNASVSKDTPILVKINGEVKRTTFAELDKLYF 103



 Score = 39.3 bits (90), Expect = 0.80,   Method: Composition-based stats.
 Identities = 39/179 (21%), Positives = 66/179 (36%), Gaps = 25/179 (13%)

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           ++F+DE   L+   +  L   ME +                 N+ RF  I +      + 
Sbjct: 534 IIFLDESDALTADAQNALRRTMEKYS----------------NVCRF--ILSCNYPSKII 575

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
            P+Q R  I  R +  + ED+   ++  A+  GL +T      I   S G  R A  +L+
Sbjct: 576 PPIQSRCAI-FRFSPLKKEDIAKKLKEIAEKEGLELTPSGLEAIIYVSEGDLRKAINVLQ 634

Query: 228 RVR------DFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV 280
                    D + V    +  R      ++ LA+D    +  DL Y  M+     G  +
Sbjct: 635 TAAAISKKIDDSVVYKVSSRARPEEIKKMINLALDGKFVEARDLLYKLMVEWGMSGEDI 693


>gi|258517414|ref|YP_003193636.1| Sigma 54 interacting domain-containing protein [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257781119|gb|ACV65013.1| Sigma 54 interacting domain protein [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 650

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 61/291 (20%), Positives = 95/291 (32%), Gaps = 63/291 (21%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +  LRP    E  GQ  A   L      +K  +    H+L  GPPG+GKTT A++     
Sbjct: 170 MEFLRPTCFGEIIGQERAVKAL-----LSKLASPFPQHILLYGPPGVGKTTAARLALEAA 224

Query: 79  G----------------------VNFRSTSGPVIAKA---------GDLA---------A 98
                                   + R  + P++             DLA          
Sbjct: 225 KNISGTPFVKDAPFIEVNGTTLRWDSREITNPLLGSVHDPIYQGARRDLADSGIPEPKLG 284

Query: 99  LLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSR----- 153
           L+T+     +LFIDEI  +  I++  L   +ED ++     E         ++ R     
Sbjct: 285 LVTDAHGG-ILFIDEIGEMDPILQNKLLKVLEDKRVFF---ESTYYDPGDQSIPRYIKKL 340

Query: 154 --------FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTD 205
                   F LI ATTR     NP        +  +      +K IV + A    + + D
Sbjct: 341 FDQGAPADFLLIGATTRSPEDINPAIRSRCAEVYFDPLTPGAIKQIVNQAADKLNIGLED 400

Query: 206 EAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAID 256
           + A EI        R A  +L      +   + +T   +           D
Sbjct: 401 KVA-EIISEYTIEGRKAVNILADAYGMSSYRNEETAYEQKKLYICELDIYD 450


>gi|319651746|ref|ZP_08005872.1| ATP-dependent protease [Bacillus sp. 2_A_57_CT2]
 gi|317396565|gb|EFV77277.1| ATP-dependent protease [Bacillus sp. 2_A_57_CT2]
          Length = 555

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 60/288 (20%), Positives = 100/288 (34%), Gaps = 56/288 (19%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           R++S  +     +RP +  +  GQ +   +LK     A        HV+  GPPG+GKT 
Sbjct: 51  RSISLTEPLSEKVRPASFADIVGQEDGIKSLK-----AALCGPNPQHVIIYGPPGVGKTA 105

Query: 70  LAQVVARELGVNFRSTS----------------------GPVIAKAGD------------ 95
            A++V  E   N +S                         P+I    D            
Sbjct: 106 AARLVLEEAKKNAKSPFEAASVFIELDATTARFDERGIADPLIGSVHDPIYQGAGAMGQA 165

Query: 96  -----LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL----MVGEGPSARS 146
                    +TN     VLFIDEI  L  I    L   +ED ++ L       E     +
Sbjct: 166 GIPQPKQGAVTNAHGG-VLFIDEIGELHPIQMNKLLKVLEDRKVFLESAYYNEENTQIPT 224

Query: 147 VKINL------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
              ++      + F LI ATTR      P      + +       E++  + ++ ++   
Sbjct: 225 HIHDIFKNGLPADFRLIGATTRTPNEIPPAIRSRCMEVFFRELAEEEISAVAKKASEKVN 284

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           L +++ A   +A  +R   R A  +++     A       I  E  + 
Sbjct: 285 LTISENALGILANYARN-GREAVNMIQISAGLAITEDRDYIKDEDIEW 331


>gi|85118512|ref|XP_965460.1| activator 1 41 kDa subunit [Neurospora crassa OR74A]
 gi|28927269|gb|EAA36224.1| activator 1 41 kDa subunit [Neurospora crassa OR74A]
          Length = 387

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 57/274 (20%), Positives = 95/274 (34%), Gaps = 52/274 (18%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           ++   +    +   RP+TL + T Q    + L+  ++A+      L H+LF GPPG GKT
Sbjct: 25  TKETPRAQPWVEKYRPKTLSDVTAQDHTITVLQRTLQAS-----NLPHMLFYGPPGTGKT 79

Query: 69  TLAQVVAR-------------ELGVNFRSTSGPVIAKAGDLAAL-LTNLE---------- 104
           +    +A+             EL  +       V  K  D A + LTN            
Sbjct: 80  STILALAKELYGPELIKSRVLELNASDERGISIVREKVKDFARMQLTNPSAAYKARYPCP 139

Query: 105 DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164
              ++ +DE   ++   +  L   ME +                  ++RF        V 
Sbjct: 140 PFKLIILDEADSMTQDAQSALRRTMETYS----------------KITRF--CLICNYVT 181

Query: 165 LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGR 224
            + +PL  R     R    +  + K  ++  A+L G+ + + A   +   S G  R A  
Sbjct: 182 RIIDPLASRCS-KFRFKSLDQGNAKKRLEEIAQLEGVGLEEGAVDALIKCSEGDLRKAIT 240

Query: 225 LL----RRVRDFAEVAHAKTITREIADAALLRLA 254
            L    R V   A  A          D  +   A
Sbjct: 241 YLQSAARLVGAVAATAKDGEQKETEGDDEMEVDA 274


>gi|51891498|ref|YP_074189.1| Lon-like ATP-dependent protease [Symbiobacterium thermophilum IAM
           14863]
 gi|51855187|dbj|BAD39345.1| Lon-like ATP-dependent protease [Symbiobacterium thermophilum IAM
           14863]
          Length = 579

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 62/305 (20%), Positives = 101/305 (33%), Gaps = 68/305 (22%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +      RP + +E  GQ E    L+     A        HV+  GPPG+GKT  A++V 
Sbjct: 57  EPLSERTRPASFDEIVGQEEGIRALR-----AALCGPNPQHVIIYGPPGVGKTAAARLVL 111

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDR----------------------------- 106
            E   N  S  GP  A   ++ A     ++R                             
Sbjct: 112 EEAKRNPASPFGP-DAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGLAGIPQP 170

Query: 107 ----------DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS---- 152
                      +LF+DEI  L  +    L   +ED ++ L   E         N+     
Sbjct: 171 KPGAVTRAHGGILFLDEIGELHPVQMNKLLKVLEDRKVFL---ESAYFSPDDPNIPSHIK 227

Query: 153 ---------RFTLIAATTRVGL-LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLA 202
                     F L+ ATTR+   +   L+ R            E++  + +R A+  GL 
Sbjct: 228 DIFQNGLPADFRLVGATTRLPHEIPAALRSRCMEIFFRPLL-PEEVAQVARRAAEKVGL- 285

Query: 203 VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQ 262
           V +  A E+  R   + R A  +++           ++I R   +  +    +       
Sbjct: 286 VLEPDAEEVIKRYAASGREAVNIVQLAAGVLAGTGRRSIPRSEVEWVINSGQLQPR---- 341

Query: 263 LDLRY 267
            D R 
Sbjct: 342 PDRRI 346


>gi|13358001|ref|NP_078275.1| holliday junction DNA helicase (fragment) [Ureaplasma parvum
           serovar 3 str. ATCC 700970]
 gi|170762089|ref|YP_001752524.1| holliday junction ATP-dependent DNA helicase RuvB [Ureaplasma
           parvum serovar 3 str. ATCC 27815]
 gi|11356863|pir||E82891 holliday junction DNA helicase, truncated homolog UU438 [imported]
           - Ureaplasma urealyticum
 gi|6899429|gb|AAF30850.1|AE002140_9 holliday junction DNA helicase (fragment) [Ureaplasma parvum
           serovar 3 str. ATCC 700970]
 gi|168827666|gb|ACA32928.1| holliday junction ATP-dependent DNA helicase RuvB [Ureaplasma
           parvum serovar 3 str. ATCC 27815]
          Length = 109

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 8/111 (7%)

Query: 210 EIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLT 269
            IA  ++G PR+A RLL+RV DF      K        +   ++ I + G D+ D+ YL 
Sbjct: 1   MIANNAKGIPRLANRLLKRVVDF------KINGFNDIKSIFKKIQIYEFGLDEQDINYLN 54

Query: 270 MIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLM 320
           ++ R      +G+++I+  L   +  IE  IEPY+IQ  FI +  RGR + 
Sbjct: 55  VLYR--QDNEIGLKSIAQILRLDQYTIETKIEPYLIQHHFINKNLRGRKIT 103


>gi|312601231|gb|ADQ90486.1| DNA polymerase III gamma and tau subunit [Mycoplasma hyopneumoniae
           168]
          Length = 721

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/240 (17%), Positives = 76/240 (31%), Gaps = 50/240 (20%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
              RP+   +  GQ     +LK  I++           LF GP G GKTT+A++ A  + 
Sbjct: 12  RKYRPKKFSDIVGQKFLLESLKNIIKS----GNFFHAYLFSGPHGTGKTTVAKIFANAIN 67

Query: 80  VNFRS---------------------TSGPVIAKAGDLAALLTN------LEDRDVLFID 112
              ++                               ++  ++ N      +    +  +D
Sbjct: 68  CTHKTDLIEPCQNCIKNFNNSLDIIEMDAASHNGVKEIREIIENSINFPQISPYKIYILD 127

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS          +E+                         I ATT V  +   +  
Sbjct: 128 EVHMLSTSAFNAFLKTLEE------------------PPKHMIFILATTEVHKIPLTILS 169

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R      L   E E +   ++   +   +     A   + + S+G+ R A  +L +V  F
Sbjct: 170 RVQRYNFLALKEDE-ICHRLEFILEKERIKYEKNALKSVFLLSQGSLRDAISILEQVATF 228


>gi|45357587|ref|NP_987144.1| ATPase [Methanococcus maripaludis S2]
 gi|45047147|emb|CAF29580.1| putative AAA superfamily ATPase, similar to FtsH [Methanococcus
           maripaludis S2]
          Length = 371

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 48/190 (25%), Positives = 82/190 (43%), Gaps = 16/190 (8%)

Query: 25  RTLEEFTGQVEACSNLKVFI---EAAKARAE-ALDHVLFVGPPGLGKTTLAQVVARELGV 80
            T EE  GQ++A    K+ I   E  +   E A  ++LF GPPG GKT LA+ +A E  V
Sbjct: 123 TTFEEVVGQIDAKKKCKIVIKYLENPELFGEWAPKNILFYGPPGTGKTMLARALATETDV 182

Query: 81  NFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDF 132
                    +        +  + +L  N  +    ++FIDE+  +++  +          
Sbjct: 183 PLYLIKATELIGDHVGDGSKQIESLYENASENTPSIIFIDELDAIALSRQFQSLRGDVSE 242

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            ++ ++ E      +K NL   T IAAT    +L N ++ RF   I     +  +   I+
Sbjct: 243 VVNALLTELDG---IKNNLGVVT-IAATNNPEMLDNAIRSRFEEEIEFKMPDDNERLKIL 298

Query: 193 QRGAKLTGLA 202
           +  A+   +A
Sbjct: 299 ELYAEKMPIA 308


>gi|45190411|ref|NP_984665.1| AEL196Wp [Ashbya gossypii ATCC 10895]
 gi|44983307|gb|AAS52489.1| AEL196Wp [Ashbya gossypii ATCC 10895]
          Length = 333

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 68/184 (36%), Gaps = 24/184 (13%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           +     I   RP +L++  GQ +    ++ F++  +     L H+LF GPPG GKT+   
Sbjct: 8   ANNLPWIEKYRPDSLDDVYGQRDVVETVRKFVQEGR-----LPHLLFYGPPGTGKTSTIC 62

Query: 73  VVAREL------------GVNFRSTSGPVIAKAGDLAALLTNLEDR-DVLFIDEIHRLSI 119
            +A+E+              +       V  +  + A+          ++ +DE   ++ 
Sbjct: 63  ALAKEIYGKNYRNMVLELNASDDRGIDVVRNQIKEFASTRQIFSKGFKLIILDEADAMTS 122

Query: 120 IVEEILYPAMEDFQLD--LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             +  L   +E +  +    +    + +     LSR T      R   L     +R  + 
Sbjct: 123 AAQNALRRIIEKYTKNTRFCILANYAHKLTPALLSRCTRF----RFQPLAEAAIERRVLS 178

Query: 178 IRLN 181
           I  +
Sbjct: 179 IMAH 182


>gi|11498884|ref|NP_070113.1| cell division protein CDC48 [Archaeoglobus fulgidus DSM 4304]
 gi|2649294|gb|AAB89960.1| cell division control protein, AAA family, putative [Archaeoglobus
           fulgidus DSM 4304]
          Length = 352

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 60/251 (23%), Positives = 98/251 (39%), Gaps = 21/251 (8%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAE----ALDHVLFVGPPGLGKTTLAQVVA 75
            ++R  TL++  GQ EA    KV +E  +   +    A  +VLF GPPG GKT +A+ ++
Sbjct: 97  EIVRDITLDDVVGQEEAKRKAKVILEYLRNPEKFGKWAPKNVLFYGPPGTGKTMMAKALS 156

Query: 76  RELGVNFRSTSGPVI--AKAGDLAALLTNLEDRD------VLFIDEIH--RLSIIVEEIL 125
            E    F S     +     GD A  +  L +R       ++F+DE     L    +EI 
Sbjct: 157 NEAKTPFLSVKSTKLIGEHVGDGARRVHELYERARQLAPCIVFLDEFDAIALDRGYQEIR 216

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
               E     L   +G ++            IAAT RV LL   ++ RF   I       
Sbjct: 217 GDVSEIVNALLTELDGTNSNEG------ICTIAATNRVELLDASIRSRFEEEIEFRLPSY 270

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPR-IAGRLLRRVRDFAEVAHAKTITRE 244
           E+   I++R  +   + V        A     + R +  ++++     A       I  E
Sbjct: 271 EERLEILRRNLEEFPVPVKARLELVAAASEGFSGRDLVEKVIKASLHKAIAEGKDKIETE 330

Query: 245 IADAALLRLAI 255
               A  ++ +
Sbjct: 331 DLLTAAEKVKM 341


>gi|330834115|ref|YP_004408843.1| replication factor C small subunit [Metallosphaera cuprina Ar-4]
 gi|329566254|gb|AEB94359.1| replication factor C small subunit [Metallosphaera cuprina Ar-4]
          Length = 325

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 51/241 (21%), Positives = 89/241 (36%), Gaps = 39/241 (16%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
            E       RPRTL++   Q +    LK F++        + H+LF GPPG GKTT A  
Sbjct: 2   DEILWAEKYRPRTLDDIVNQKDIVDRLKRFVK-----ERNMPHLLFAGPPGTGKTTSALA 56

Query: 74  VAR------------ELGVNFRSTSGPVIAKAGDLAALLT--NLEDRDVLFIDEIHRLSI 119
           +              EL  +  +    +  K  D A  +T  N+  + VL +DE   ++ 
Sbjct: 57  LVHDLYGENYDQFFLELNASDENGINVIRTKVKDFARTVTPGNVPFKTVL-LDEADNMTS 115

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
             ++ L   ME      +  E                I A   +  + +P+Q R  +  R
Sbjct: 116 DAQQALRRTME------LYTESTRF------------ILACNYLSKIIDPIQSRTAL-FR 156

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
               + ED+   ++   K   +    ++   +   + G  R A  +L+    + +V    
Sbjct: 157 FYPLKKEDVILRLENILKEEKVQYDVKSLEVVYDVTGGDMRKAINVLQAAAAYGKVTTDS 216

Query: 240 T 240
            
Sbjct: 217 V 217


>gi|89098929|ref|ZP_01171809.1| ATP-dependent protease [Bacillus sp. NRRL B-14911]
 gi|89086333|gb|EAR65454.1| ATP-dependent protease [Bacillus sp. NRRL B-14911]
          Length = 555

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 58/285 (20%), Positives = 98/285 (34%), Gaps = 56/285 (19%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV- 74
           +     +RP + E+  GQ +   +LK     A        HV+  GPPG+GKT  A++V 
Sbjct: 57  EPLSERVRPASFEDIVGQADGIKSLK-----AALCGPNPQHVIIYGPPGVGKTAAARLVL 111

Query: 75  --ARELGVNFRSTSG-------------------PVIAKAGD-----------------L 96
             A++   +    S                    P+I    D                  
Sbjct: 112 EEAKKQDKSPFRKSSVFVELDATTARFDERGIADPLIGSVHDPIYQGAGAMGQAGIPQPK 171

Query: 97  AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL----MVGEGPSARSVKINL- 151
              +TN     VLFIDEI  L  I    L   +ED ++ L       E         ++ 
Sbjct: 172 QGAVTNAHGG-VLFIDEIGELHPIQMNKLLKVLEDRKVFLESAYYNEENTQIPQHIHDIF 230

Query: 152 -----SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDE 206
                + F L+ ATTR      P      + +       ++++TI  + A    + ++ +
Sbjct: 231 KNGLPADFRLVGATTRTPSEIPPAIRSRCMEVFFKELTEDEVETISSKAADKVKMPISGK 290

Query: 207 AACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           +   +A  +R   R A  L++     A       I  E  +  + 
Sbjct: 291 SLKTLASYARN-GREAVNLVQISAGVAITEDRDYIKDEDIEWVIN 334


>gi|329736044|gb|EGG72317.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
           epidermidis VCU045]
          Length = 568

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 53/263 (20%), Positives = 95/263 (36%), Gaps = 25/263 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RP++ ++  GQ      L+  I   K         +F GP G GKT++A+V A+
Sbjct: 5   ALYRMYRPQSFDDVVGQTYVTKTLRNAISKGKQSHAY----IFSGPRGTGKTSIAKVFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +         P    A  +   +T   + DV+ ID      +  +  I +++ Y   E 
Sbjct: 61  AINCLNSDDGEPCNECA--ICKGITQGTNNDVIEIDAASNNGVDEIRNIRDKVKYAPSES 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++   +    I ATT    +   +  R         
Sbjct: 119 KYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISR-AQRFDFKA 177

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA----HA 238
              + +   ++  A    L   D A   IA  S G  R A  ++ +   F +       A
Sbjct: 178 ISSDQIIDRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIMDQAIAFGDERLTLQDA 237

Query: 239 KTITREIADAALLRLAIDKMGFD 261
             +T  + +AAL  L  D +  D
Sbjct: 238 LNVTGSVDEAALNELFNDIVKSD 260


>gi|303232522|ref|ZP_07319208.1| DNA polymerase III, subunit gamma and tau [Atopobium vaginae
           PB189-T1-4]
 gi|302481309|gb|EFL44383.1| DNA polymerase III, subunit gamma and tau [Atopobium vaginae
           PB189-T1-4]
          Length = 679

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 57/256 (22%), Positives = 94/256 (36%), Gaps = 26/256 (10%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           ++  +  RPRT  E  GQ    + L      A    +     LF GP G GKTT+A+++A
Sbjct: 2   ESLYTTYRPRTFTEVVGQQHVVATL----THAVTHNKIAHAYLFCGPRGTGKTTMARLLA 57

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL--SIIVEEIL----YPAM 129
           + L     +   P    A D    +   +  DVL +D   R     + EEIL    Y  +
Sbjct: 58  KALTCTHTTNHLP--CGACDACLQIARAQHPDVLELDAASRTGVDNVREEILNRVSYAPV 115

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                  ++ E             ++++   +    I  TT    +   +  R       
Sbjct: 116 VAPYKIFIIDEVHMLTTAAFNALLKTIEEPPAHVIFIMCTTEPQKIPETILSRVQ-RFDF 174

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA----EVA 236
           +     D+   ++       +  TD+A   I   ++G  R A   L +V  F     + A
Sbjct: 175 HSVAANDMFEHLKHVCASEHIQATDDAIWAIVHHAQGGMRDALSSLEQVSVFGSGSIDAA 234

Query: 237 HAKTITREIADAALLR 252
             +T+  E  D AL R
Sbjct: 235 LVRTMFGETQDDALAR 250


>gi|294674298|ref|YP_003574914.1| DNA polymerase III subunits gamma and tau [Prevotella ruminicola
           23]
 gi|294473273|gb|ADE82662.1| DNA polymerase III, subunits gamma and tau [Prevotella ruminicola
           23]
          Length = 601

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 48/280 (17%), Positives = 101/280 (36%), Gaps = 26/280 (9%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP + +   GQ    + LK  +++ K         LF GP G+GKTT A++ A+ +
Sbjct: 7   ARKYRPLSFDTVVGQAALTTTLKNAVKSGKLAHAY----LFCGPRGVGKTTCARIFAKAI 62

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI------IVEEILYPAMEDF 132
                +  G    +     +        ++  +D     S+      + +  + P +  +
Sbjct: 63  NCQHPTAEGEACNECESCQS-FNEQRSLNIFELDAASNNSVEHIKTLMEQTRIPPQLGRY 121

Query: 133 QLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           ++ ++               ++++   +    I ATT    +   +  R  I        
Sbjct: 122 KVFIIDEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQIYDFERM-T 180

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE--VAHAKTIT 242
           I +    ++  A+  G+   ++A   IA ++ G  R A  +  +   F +  + + K I 
Sbjct: 181 IRNTIDHLKHVAEQEGITYEEQALAVIAEKADGGMRDALSIFDQAASFCQGNITYEKVIE 240

Query: 243 REIADAALLRLAIDKMGFDQL--DLRYLT--MIARNFGGG 278
                 +     I  +  D    D+  L   +I + F GG
Sbjct: 241 DLNVLDSENYFKIIDLAIDNKVSDIMVLLNGVINKGFDGG 280


>gi|297527206|ref|YP_003669230.1| AAA ATPase central domain protein [Staphylothermus hellenicus DSM
           12710]
 gi|297256122|gb|ADI32331.1| AAA ATPase central domain protein [Staphylothermus hellenicus DSM
           12710]
          Length = 423

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 75/222 (33%), Gaps = 23/222 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             I   RP+ + +   Q +A      ++E+      +    L  GP G GKT+L +  A 
Sbjct: 6   PWIIKYRPKKIADVVNQDKAKKQFIQWLESWLKGKPSKKAALLYGPAGCGKTSLVEAAAN 65

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAM 129
           E G+     +     +  D+  +               ++ +DE+  +S   ++      
Sbjct: 66  EYGLEIVEMNASDFRRRQDIERIAKTAASMRSLFARGKIILLDEVDGISGTADKGA---- 121

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
                 L + E      V           A         PL+D   +          ++ 
Sbjct: 122 --IYAILHLLEITRYPVVM---------TANNPWDQKLRPLRDASLMISFKRL-TERNVV 169

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            +++R  +   L   D A  EIA RS G  R A   L+ + +
Sbjct: 170 IVLKRICQFEKLECEDAALKEIARRSEGDLRSAINDLQAIAE 211


>gi|294654838|ref|XP_456919.2| DEHA2A13574p [Debaryomyces hansenii CBS767]
 gi|199429188|emb|CAG84897.2| DEHA2A13574p [Debaryomyces hansenii]
          Length = 327

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 83/246 (33%), Gaps = 40/246 (16%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +S E   +   RP  L++  G  E    LK+ +E        + H++  G PG+GKTT  
Sbjct: 7   LSLELPWVEKYRPHKLDDIVGNEETVERLKLLVE-----DGNMPHMIISGLPGIGKTTSI 61

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAAL--LTN-------------LEDRDVLFIDEIHR 116
             +A EL          +   A D   +  + N                  ++ +DE   
Sbjct: 62  HCLAYELLGPELYQQATLELNASDDRGIDVVRNKIKQFAQTKISLPAGRHKIIILDEADS 121

Query: 117 LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
           ++   ++ L   ME +                 N +RF    A  +   +  PLQ R  I
Sbjct: 122 MTPGAQQALRRTMEIYS----------------NTTRFAF--ACNQSSKIIEPLQSRCAI 163

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA-GRLLRRVRDFAEV 235
                  + + L+ +++   KL  +    E    +   + G  R A   L   V  F  V
Sbjct: 164 LRYTKLSDEQVLERLLE-VTKLEDVKYNSEGLQALIFTAEGDMRQAINNLQSTVAGFGFV 222

Query: 236 AHAKTI 241
                 
Sbjct: 223 NDINVF 228


>gi|307717536|gb|ADN88821.1| recombination factor protein [Listeria marthii]
          Length = 191

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/202 (22%), Positives = 83/202 (41%), Gaps = 17/202 (8%)

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           G+GKT++A  +A      FR+ +     K   ++ A    +    +L +DE+HRL    +
Sbjct: 1   GIGKTSIASAIAGSTKYAFRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQ 60

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           + L P +E   + +++G   S   + IN +    I + T++  L     +   I      
Sbjct: 61  DFLLPLLESGAI-ILIGATTSNPYIAINPA----IRSRTQIFELNPLTVEDIMI------ 109

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT-- 240
             ++   +  +RG     + + + A    A  S G  R A   L      +E  +     
Sbjct: 110 -TMDRALSDKERGLGDYHVEIDEVAKKHFATASNGDVRSALNALELAVISSEPNNDGVIR 168

Query: 241 ITREIADAALLRL--AIDKMGF 260
           IT ++A+  L +   A DK G 
Sbjct: 169 ITLDVAEECLQKKSLAHDKDGD 190


>gi|88803370|ref|ZP_01118896.1| DNA polymerase III subunit gamma/tau [Polaribacter irgensii 23-P]
 gi|88780936|gb|EAR12115.1| DNA polymerase III subunit gamma/tau [Polaribacter irgensii 23-P]
          Length = 575

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 52/272 (19%), Positives = 91/272 (33%), Gaps = 43/272 (15%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+  ++  GQ    + L    E A         +LF GP G+GKT+ A+++A+ +
Sbjct: 8   ARKYRPKNFQDVVGQQAITNTL----ENAIKNNHLAQALLFTGPRGVGKTSCARILAKRI 63

Query: 79  G-------------VNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSI 119
                          N             D+ +L   +          V  IDE+H LS 
Sbjct: 64  NQQDTENLEEEDFAFNIFELDAASNNSVDDIRSLTDQVRIPPQTGKYKVYIIDEVHMLSQ 123

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
                    +E+          P A ++ I         ATT    +   +  R  I   
Sbjct: 124 AAFNAFLKTLEE----------PPAHAIFIL--------ATTEKHKIIPTILSRCQIFDF 165

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
                ++  K  ++  +    +   D+A   IA ++ G  R A  +  RV  F+     +
Sbjct: 166 KRIGVLDA-KNYLKEISVKENITADDDALHIIAQKADGAMRDALSIFDRVVSFSGKKLTR 224

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMI 271
               E  +  L      +M    LD +   ++
Sbjct: 225 EAVTENLN-VLDYDTYFEMTDLLLDNKIPDVL 255


>gi|15897671|ref|NP_342276.1| replication factor C large subunit [Sulfolobus solfataricus P2]
 gi|284174996|ref|ZP_06388965.1| replication factor C large subunit [Sulfolobus solfataricus 98/2]
 gi|42559540|sp|Q9UXF6|RFCL_SULSO RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit;
           AltName: Full=SsoRFC large subunit
 gi|6015707|emb|CAB57534.1| replication factor C, large subunit [Sulfolobus solfataricus P2]
 gi|13813942|gb|AAK41066.1| Activator 1, replication factor C (RFC) large subunit (rfcL)
           [Sulfolobus solfataricus P2]
 gi|261602439|gb|ACX92042.1| AAA ATPase central domain protein [Sulfolobus solfataricus 98/2]
          Length = 405

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 84/218 (38%), Gaps = 34/218 (15%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPR+L++   Q +A   L+ +IE+       +  VL  GPPG+GKT LA+ +A +     
Sbjct: 9   RPRSLKDVENQDDAKKQLQEWIESWLNGNSNVKAVLLHGPPGVGKTVLAEALAHDYNFEL 68

Query: 83  RSTSGPVIAKAGDLAALLTNLE--------DRDVLFIDEIHRLSIIVE----EILYPAME 130
              +     K  D+ ++                ++ +DE+  +++  +    + +   +E
Sbjct: 69  LEMNASDSRKLQDIKSIAEKAAVYGSIFGTKGKLILLDEVDGINVREDTGAIQGILELIE 128

Query: 131 DFQLDLMVGEG-PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             +  +++    P    ++   ++  +I  +                           L+
Sbjct: 129 KTKYPIIMTANDPWNPGLRELRNKAKMIELSKLGKY---------------------PLR 167

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
            I+++  +   +   DEA   I   S G  R A  +L+
Sbjct: 168 RILKKICQAEKIICDDEALNYIIDSSEGDARYAINILQ 205


>gi|14590059|ref|NP_142123.1| replication factor C large subunit [Pyrococcus horikoshii OT3]
 gi|42559336|sp|O57853|RFCL_PYRHO RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|3256499|dbj|BAA29182.1| 468aa long hypothetical replication factor C subunit [Pyrococcus
           horikoshii OT3]
          Length = 468

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 79/225 (35%), Gaps = 29/225 (12%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH-VLFVGPPGLGKTTLAQ 72
            +   I   RPR L E   Q +A   ++ +IE+           +L  GPPG GKTT   
Sbjct: 2   PDVPWIEKYRPRKLSEIVNQEQALEKVRAWIESWLHGNPPKKKALLLAGPPGSGKTTTVY 61

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEIL 125
            +A E        +         +A  +          + R ++F+DE   +        
Sbjct: 62  ALAHEYNFEVIELNASDERTYNKIARYVQAAYTMDIMGKRRKIIFLDEADNIEPS----- 116

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
                          G    +  I+ +R  +I A      +   ++DR  +       + 
Sbjct: 117 ---------------GAPEIAKLIDKARNPIIMAANHYWEVPKEIRDRAELVEYKRLNQR 161

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
           + +  +V R  K  G+ V  E   EIA RS G  R A   L+ + 
Sbjct: 162 DVISALV-RILKREGITVPKEILTEIAKRSSGDLRAAINDLQTIV 205


>gi|71275385|ref|ZP_00651671.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon]
 gi|71898557|ref|ZP_00680728.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
 gi|170730362|ref|YP_001775795.1| DNA polymerase III subunits gamma and tau [Xylella fastidiosa M12]
 gi|71163685|gb|EAO13401.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon]
 gi|71731681|gb|EAO33741.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
 gi|167965155|gb|ACA12165.1| DNA-directed DNA polymerase [Xylella fastidiosa M12]
          Length = 601

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 56/309 (18%), Positives = 97/309 (31%), Gaps = 72/309 (23%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH-VLFVGPPGLGKTTLAQVVARELGVN 81
           RP+   E  GQ      L   +E+ +     L H  LF G  G+GKTT+A++ A+ L   
Sbjct: 11  RPKRFAELVGQEHVVRALSNALESGR-----LHHAFLFTGTRGVGKTTIARIFAKSLNCE 65

Query: 82  ------------------------FRSTSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                                D+  ++ N +         V  I
Sbjct: 66  QGTSADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVREMIENAQYMPSRGKFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSKAAFNALLKTLEE------------------PPPHVKFLLATTDPQKLPVTVL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L   + E ++  + +      +   D A  E++  + G+ R    LL +   
Sbjct: 168 SRC-LQFNLKRLDEEQIQRQIAKILTAEQITADDAAIIELSKAADGSLRDGLSLLDQAIA 226

Query: 232 FAE-----------VAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV 280
           +A            +        E+  AAL+    D++      LR +  +A        
Sbjct: 227 YAGGTLREGAVRDMLGTVDRTQVEVMLAALIAGDGDRL------LRVIATLAEFSPDWGG 280

Query: 281 GIETISAGL 289
            +E ++  L
Sbjct: 281 VLEALAEAL 289


>gi|229124011|ref|ZP_04253203.1| ATP-dependent protease La [Bacillus cereus 95/8201]
 gi|228659313|gb|EEL14961.1| ATP-dependent protease La [Bacillus cereus 95/8201]
          Length = 557

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 55/289 (19%), Positives = 99/289 (34%), Gaps = 57/289 (19%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           R +S  +     +RP +  +  GQ +   +LK     A        HV+  GPPG+GKT 
Sbjct: 52  REISLTEPLAEKVRPTSFLDIVGQEDGIKSLK-----AALCGPNPQHVIIYGPPGVGKTA 106

Query: 70  LAQVVARELGVNFRSTS----------------------GPVIAKAGD------------ 95
            A++V  E   N +S                         P+I    D            
Sbjct: 107 AARLVLEEAKRNPKSPFRTNATFIELDATTARFDERGIADPLIGSVHDPIYQGAGAMGQA 166

Query: 96  -----LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL----MVGEGPSARS 146
                    +T+     +LFIDEI  L  I    +   +ED ++ L       E     +
Sbjct: 167 GIPQPKKGAVTDAHGG-ILFIDEIGELHPIQMNKMLKVLEDRKVFLESAYYSEENTMIPT 225

Query: 147 VKINL------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
              ++      + F L+ ATTR      P      + +     + E+++ + +  A    
Sbjct: 226 YIHDIFQKGLPADFRLVGATTRSPEEIPPAIRSRCLEVFFRELDTEEIQKVAKNAADKVE 285

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
           + + +     I M +R   R A  L++     A +   ++  ++     
Sbjct: 286 MQIGENGIGMIGMYARN-GREAINLVQISAGMA-INEERSFIKDEDIEW 332


>gi|302348723|ref|YP_003816361.1| Replication factor C small subunit [Acidilobus saccharovorans
           345-15]
 gi|302329135|gb|ADL19330.1| Replication factor C small subunit [Acidilobus saccharovorans
           345-15]
          Length = 329

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 49/244 (20%), Positives = 84/244 (34%), Gaps = 37/244 (15%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
               +E       RPR+L+E   Q E    L  F+       + + H+LF GPPG GKTT
Sbjct: 2   STAIEELLWTEKYRPRSLKEIVNQKEIVERLSKFV-----AEKNMPHLLFAGPPGTGKTT 56

Query: 70  LAQVVAR------------ELGVNFRSTSGPVIAKAGDLAALLTNLE-DRDVLFIDEIHR 116
            A  +A             EL  +       +  K  + A   T  +    ++ +DE   
Sbjct: 57  AAHALAHDLYGDNYTQYMLELNASDERGIDTIREKVKEFARSKTPPDIPFKIVLLDEADN 116

Query: 117 LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
           ++   ++ L   ME +                   +    I A      + +P+Q R   
Sbjct: 117 MTADAQQALRRLMELYS------------------ANTRFILAANFPSKIIDPIQSRCAF 158

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
             R      +D+   ++  A+   +   ++A   I   S G  R A  +L+      +V 
Sbjct: 159 -FRFTPLGKDDVVGRLRYIAEKENVKYDEDALEAIYDISEGDMRKAINILQTAASLGKVD 217

Query: 237 HAKT 240
               
Sbjct: 218 VDSV 221


>gi|307717564|gb|ADN88835.1| recombination factor protein [Listeria seeligeri]
          Length = 191

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 46/202 (22%), Positives = 82/202 (40%), Gaps = 17/202 (8%)

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           G+GKT++A  +A      FR+ +     K   ++ A    +    +L +DE+HRL    +
Sbjct: 1   GIGKTSIASAIAGSTKYAFRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQ 60

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           + L P +E   + +++G   S   + IN +    I + T++  L         + +    
Sbjct: 61  DFLLPLLESGAI-ILIGATTSNPYIAINPA----IRSRTQIFELKP-------LTVEDIM 108

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT-- 240
             ++      +RG     + + + A    A  S G  R A   L      +EV       
Sbjct: 109 TTMDRALADKERGLGNYHVEIDEFAKKHFATASNGDVRSALNALELAVISSEVDKNGITQ 168

Query: 241 ITREIADAALLRL--AIDKMGF 260
           IT E+A+  L +   A DK G 
Sbjct: 169 ITLEVAEECLQKKSLAHDKDGD 190


>gi|284046734|ref|YP_003397074.1| DNA polymerase III subunits gamma and tau [Conexibacter woesei DSM
           14684]
 gi|283950955|gb|ADB53699.1| DNA polymerase III, subunits gamma and tau [Conexibacter woesei DSM
           14684]
          Length = 724

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 92/244 (37%), Gaps = 24/244 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPRT  +  GQ      L+  +E  K         LFVG  G GKT++A+++A  L    
Sbjct: 12  RPRTFSDVVGQTHVVRTLRNAVERDKVHHAY----LFVGSRGTGKTSMAKILAACLNCE- 66

Query: 83  RSTSGPVIAKAGDLAAL--LTNLEDRDVLFIDEIHR-----LSIIVEEILYPAMEDFQLD 135
               GP I   G  ++   + N    DV+ +D         +  + +++ Y  +      
Sbjct: 67  --RGGPTIEPCGVCSSCVSIANATSLDVIEMDAASNNSVDDIRELRDKVAYAPVSGRYKV 124

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             ++++        + ATT    +   + DR           +E
Sbjct: 125 YILDEAHMLSSAAWNAFLKTLEEPPPHTIFVLATTEANKVLPTVVDRC-HRFDFTRPNVE 183

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           ++  +++R A    +A+ D+A   +A  + G+ R A   L ++  +       T      
Sbjct: 184 EIAGVLRRVADQESIAIPDQAVALVARHATGSFRDALGTLEQLTTYGGSGADGTGAEISV 243

Query: 247 DAAL 250
           +  L
Sbjct: 244 EDVL 247


>gi|229169214|ref|ZP_04296928.1| ATP-dependent protease La [Bacillus cereus AH621]
 gi|228614280|gb|EEK71391.1| ATP-dependent protease La [Bacillus cereus AH621]
          Length = 556

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 59/288 (20%), Positives = 97/288 (33%), Gaps = 56/288 (19%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           R VS  +     +RP +  +  GQ +   +LK     A        HV+  GPPG+GKT 
Sbjct: 51  REVSLTEPLAEKVRPTSFIDIVGQEDGIKSLK-----AALCGPNPQHVIIYGPPGVGKTA 105

Query: 70  LAQVVARELGVNFRSTS----------------------GPVIAKAGD------------ 95
            A++V  E   N +S                         P+I    D            
Sbjct: 106 AARLVLEEAKRNPKSPFRTNATFIELDATTARFDERGIADPLIGSVHDPIYQGAGAMGQA 165

Query: 96  -----LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL----MVGEGPSARS 146
                    +T+     +LFIDEI  L  I    +   +ED ++ L       E     +
Sbjct: 166 GIPQPKKGAVTDAHGG-ILFIDEIGELHPIQMNKMLKVLEDRKVFLESAYYSEENSMIPT 224

Query: 147 VKINL------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
              ++      + F L+ ATTR      P      + +     + E+++ + +  A    
Sbjct: 225 YIHDIFQKGLPADFRLVGATTRSPEEIPPAIRSRCLEVFFRELDTEEIQKVAKNAADKVE 284

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           + V +     I M +R   R A  L++     A       I  E  + 
Sbjct: 285 MQVGENGIEMIGMYARN-GREAINLVQISAGMAINEERPFIKDEDIEW 331


>gi|226309651|ref|YP_002769545.1| DNA polymerase III gamma and tau subunits [Brevibacillus brevis
           NBRC 100599]
 gi|226092599|dbj|BAH41041.1| DNA polymerase III gamma and tau subunits [Brevibacillus brevis
           NBRC 100599]
          Length = 565

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 46/248 (18%), Positives = 83/248 (33%), Gaps = 55/248 (22%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A   + RP+T ++  GQ    + L+  +     R   L H  LF GP G GKT+ A+++A
Sbjct: 5   ALYRVYRPQTFQDVVGQEHVTTTLRNAL-----RENRLSHAYLFNGPRGTGKTSAAKIMA 59

Query: 76  RELGVN------------------------FRSTSGPVIAKAGDLAALLTNLE------D 105
           + +                                        ++  +   ++       
Sbjct: 60  KAVNCEQPIDGEPCNQCDTCRAISNGSVTDVLEIDAASNRGVEEIRDIRDKVKFAPSDVR 119

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
             V  IDE+H L+      L   +E+                    S    I ATT    
Sbjct: 120 YKVYIIDEVHMLTTEAFNALLKTLEE------------------PPSHVIFILATTEPHK 161

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           L   +  R       +   +  +  ++QR  +  G+ V ++A   +A  + G  R A  L
Sbjct: 162 LPATIISRCQ-RFDFHRIPLRVMVDLLQRICQSQGVQVEEQALQLVAKMAEGGARDALSL 220

Query: 226 LRRVRDFA 233
           L +   ++
Sbjct: 221 LDQAISYS 228


>gi|227533726|ref|ZP_03963775.1| DNA-directed DNA polymerase [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|227188710|gb|EEI68777.1| DNA-directed DNA polymerase [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
          Length = 578

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 60/295 (20%), Positives = 104/295 (35%), Gaps = 32/295 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  ++  GQ      LK     A    +     LF GP G GKT++A+++A+ L    
Sbjct: 24  RPQQFKDVIGQEAITKTLK----NALITGQTSHAYLFTGPRGTGKTSVAKILAKALNCLH 79

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P      ++   + N    DV+ ID      +  +  I ++  Y   +      +
Sbjct: 80  LEDGEPDNTC--EICQAINNGSLTDVIEIDAASNNGVDEIRDIRDKAKYAPTQARVKVYI 137

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++   +    I ATT    +   +  R            ED+
Sbjct: 138 IDEVHMLSSGAFNALLKTLEEPPAHVVFILATTEPHKIPATIISRTQ-RFDFRRITPEDI 196

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              ++       +   D A   IA  + G  R A  +L +V  F        +T E A  
Sbjct: 197 VKRMRFILDDKQITYDDAALKVIAKAAEGGMRDALSILDQVLSF----GDNHVTTEDALD 252

Query: 249 ALLRLAIDKMGFDQLDLRYLTM-IARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
               +    +G      +YL   +A++       IE + A   +    IEDLIE 
Sbjct: 253 VTGGVTTAVLG------KYLAAVLAKDHAQALKMIEDLLASGKDAGRLIEDLIEY 301


>gi|315645732|ref|ZP_07898856.1| hypothetical protein PVOR_09650 [Paenibacillus vortex V453]
 gi|315279210|gb|EFU42520.1| hypothetical protein PVOR_09650 [Paenibacillus vortex V453]
          Length = 588

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 59/281 (20%), Positives = 94/281 (33%), Gaps = 56/281 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                 RP+T+++  GQ +    LK  + +A  +     HV+  GPPG+GKT  A+VV  
Sbjct: 58  PLAEKTRPQTMDDIVGQKDGLRALKAALCSANPQ-----HVIVYGPPGVGKTAAARVVME 112

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR------------------------------ 106
           E   N +S      AK  ++ A     ++R                              
Sbjct: 113 EAKKNPQSPFKY-DAKFTEIDATTARFDERGIADPLIGSVHDPIYQGAGAMGVAGIPQPK 171

Query: 107 ---------DVLFIDEIHRLSIIVEEILYPAMEDFQLDL------MVGEGPSARSVKI-- 149
                     +LFIDEI  L  I    L   +ED ++ L             A    I  
Sbjct: 172 PGAVTKAHGGILFIDEIGELHPIQMNKLLKVLEDRKVLLESAYYNSEDANTPAYIHDIFQ 231

Query: 150 --NLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEA 207
               + F L+ ATTR      P      + I       E++  I +   +  GL    E 
Sbjct: 232 NGLPADFRLVGATTRSPEEIAPALRSRCMEIFFRPLLPEEIGRIAEDAIQKIGLNSAPE- 290

Query: 208 ACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           A E+  +     R A  +++     A      ++     + 
Sbjct: 291 AVEVVKQYCSNGREAVNMIQLAAGLALTEKRDSLRAADVEW 331


>gi|320531031|ref|ZP_08032061.1| ATP-dependent protease, Lon family [Selenomonas artemidis F0399]
 gi|320136697|gb|EFW28649.1| ATP-dependent protease, Lon family [Selenomonas artemidis F0399]
          Length = 781

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 61/274 (22%), Positives = 96/274 (35%), Gaps = 57/274 (20%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
            N+    + + LLRP+  +E  GQ  A  +L      AK  +    H+L  GPPG+GKTT
Sbjct: 162 ENIRLTQSVMELLRPQNFDEIIGQERAVRSL-----MAKLSSPYPQHLLLYGPPGVGKTT 216

Query: 70  LAQVVARELG----------------------VNFRSTSGPVIAKAGD---------LA- 97
            A++V                            + R  + P++    D         LA 
Sbjct: 217 AARLVLEAAKKRAVSPFGESAPFVETDGTTLRWDPRDMTNPLLGSVHDPIYQGAQKSLAD 276

Query: 98  --------ALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG-EGPSARSVK 148
                    L+T      +LFIDEI  +  +++  L   +ED +         P  + V 
Sbjct: 277 SGVPEPKPGLVTEAHGG-ILFIDEIGEMDEMLQNKLLKVLEDKRAYFESAYYDPDDKRVP 335

Query: 149 INLSR---------FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199
             + +         F LI ATTR     NP        I         +  IV+  A+  
Sbjct: 336 PYIKKLFEEGAPADFVLIGATTRDADHINPALRSRCAEIYFEPLTPAHILRIVENAARRL 395

Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
            + + +  A  I+  +    R A  +L      A
Sbjct: 396 HVTLGEGVAELISEYT-IEGRKAINILADAYSLA 428


>gi|295133759|ref|YP_003584435.1| DNA polymerase III subunit gamma/tau [Zunongwangia profunda SM-A87]
 gi|294981774|gb|ADF52239.1| DNA polymerase III subunit gamma/tau [Zunongwangia profunda SM-A87]
          Length = 623

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 79/233 (33%), Gaps = 41/233 (17%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+T ++  GQ    + L      A A       +LF GP G+GKTT A+++A+ +
Sbjct: 8   ARKYRPQTFKDVVGQQAITNTL----ANAIAHNHLAQALLFTGPRGVGKTTCARILAKMI 63

Query: 79  G------------VNFRSTSGPVIAKAGDLAALLT------NLEDRDVLFIDEIHRLSII 120
                         N             D+  L+        +    V  IDE+H LS  
Sbjct: 64  NQDGTQSPDEDFAFNIFELDAASNNSVDDIRNLIDQVRIPPQVGTYKVYIIDEVHMLSTS 123

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                   +E+                         I ATT    +   +  R  I    
Sbjct: 124 AFNAFLKTLEE------------------PPKHAIFILATTEKHKIIPTILSRCQIFDFK 165

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
               + D K  ++  A+  G+   ++A   IA ++ G  R A  +  RV  F+
Sbjct: 166 RI-TVTDAKDYLKYIAEQEGVNAEEDALQIIAQKADGAMRDALSIYDRVVSFS 217


>gi|187776852|ref|ZP_02993325.1| hypothetical protein CLOSPO_00391 [Clostridium sporogenes ATCC
           15579]
 gi|187775511|gb|EDU39313.1| hypothetical protein CLOSPO_00391 [Clostridium sporogenes ATCC
           15579]
          Length = 575

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 55/248 (22%), Positives = 80/248 (32%), Gaps = 63/248 (25%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV-------- 74
           RP + +E  GQ      LK  I      +    HV+  GPPG GKT  A+++        
Sbjct: 78  RPSSFDEIIGQENGIKALKAAI-----CSPNPQHVIIYGPPGTGKTAAARLILEDAKKKE 132

Query: 75  --------------ARELGVNFRSTSGPVIAKAGD-----------------LAALLTNL 103
                         A  +  + R  + P+I    D                  A  +T  
Sbjct: 133 YSPFNQQSKFMEIDATTVRSDERGIADPLIGSVHDPIYQGAGALGLAGVPQPKAGAVTKA 192

Query: 104 EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS----------- 152
               +LFIDEI  L       L   +ED ++ L   +     S   N+            
Sbjct: 193 HGG-ILFIDEIGELHPSEMNKLLKVLEDRKVFL---DSAYYNSSDNNIPSYIKDIFENGL 248

Query: 153 --RFTLIAATTRVG-LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAAC 209
              F LI ATTR    +T  L+ R            E++K I     K     + +EA  
Sbjct: 249 PADFRLIGATTRSPEEITPALRSRCVEVFFRALL-PEEIKKIAMNAIKKLNFTIEEEACE 307

Query: 210 EIAMRSRG 217
            I+     
Sbjct: 308 LISKYCNN 315


>gi|255658584|ref|ZP_05403993.1| DNA polymerase III, gamma and tau subunit [Mitsuokella multacida
           DSM 20544]
 gi|260849391|gb|EEX69398.1| DNA polymerase III, gamma and tau subunit [Mitsuokella multacida
           DSM 20544]
          Length = 631

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 91/250 (36%), Gaps = 29/250 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T ++  GQ      L   I +           LF GP G GKT+ A+++A+ L    
Sbjct: 11  RPQTFKDLVGQEHISRTLANAITS----GHIGHAYLFAGPRGTGKTSTAKILAKALNCEH 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDR--DVLFID-----EIHRLSIIVEEILYPAMEDFQLD 135
               GP     G         +    DV  ID      I  +  + E + +  ++     
Sbjct: 67  ----GPTPEPCGQCEQCRKIADGSSMDVFEIDAASNRGIDEIRDLRETVKFAPVDGRYKV 122

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             ++++   +    I ATT    +   +Q R           +E
Sbjct: 123 YIIDEVHMLTTEAFNALLKTLEEPPAHVVFILATTEAHKVPPTIQSRCQRYDFKRI-TVE 181

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           ++++ ++       +   DEA   IA+++ G  R A  +L +    AE     TIT E  
Sbjct: 182 EIESRLRYITAEMKMEAEDEALAMIAIQADGGMRDALSILDQCAALAE----GTITAERV 237

Query: 247 DAALLRLAID 256
              L  +  D
Sbjct: 238 RQILGLVGHD 247


>gi|319891430|ref|YP_004148305.1| DNA polymerase III subunits gamma and tau [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317161126|gb|ADV04669.1| DNA polymerase III subunits gamma and tau [Staphylococcus
           pseudintermedius HKU10-03]
 gi|323465400|gb|ADX77553.1| DNA polymerase III, subunits gamma and tau [Staphylococcus
           pseudintermedius ED99]
          Length = 567

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 82/234 (35%), Gaps = 21/234 (8%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RP++ E+  GQ      LK  I   K         +F GP G GKT++A++ A+
Sbjct: 5   ALYRMFRPQSFEDVVGQEHVTKTLKNAIAKGKQSHAY----IFSGPRGTGKTSIAKIFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +    R    P    A      +T   + DV+ ID      +  +  I +++ Y   E 
Sbjct: 61  AINCEVRDDGEPCNECAS--CKGITQGYNSDVIEIDAASNNGVDEIRNIRDKVKYAPSES 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++   +    I ATT    +   +  R         
Sbjct: 119 KYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISR-AQRFDFKA 177

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
                +   ++  A    +   + A   IA  S G  R A  ++ +   F +  
Sbjct: 178 INANRIVDRLRYVAHQQQIEFDEAALTFIAKVSEGGMRDALSIMDQAIAFGDER 231


>gi|325680624|ref|ZP_08160166.1| DNA polymerase III, subunit gamma and tau [Ruminococcus albus 8]
 gi|324107694|gb|EGC01968.1| DNA polymerase III, subunit gamma and tau [Ruminococcus albus 8]
          Length = 534

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 53/268 (19%), Positives = 92/268 (34%), Gaps = 22/268 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T ++   Q    + LK  I   K         LF G  G GKTT A++ A+ +    
Sbjct: 10  RPKTFDDVVSQPHITTTLKNQIIGGKTAHAY----LFTGSRGTGKTTCARIFAKAVNCEH 65

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII-----VEEILYPAMEDFQLDLM 137
                P      ++     N    D++ ID     S+       E +++          +
Sbjct: 66  GKDGMPCCEC--EICKAADNGSLGDIIEIDAASNASVNDIRELREGVMFTPEMCKYKIYI 123

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT +  +   +  R       N  + ED+
Sbjct: 124 IDEVHMLSVGAFNALLKTMEEPPPHVKFILATTEIQKVPATIVSRCQ-HFDFNRIKTEDI 182

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              +   A   G  + ++AA  IA  S G  R A  LL +   F++     T++     A
Sbjct: 183 VARLSYIAGQEGFTLHEDAAELIARLSDGGMRDALSLLDQCVAFSDDITLDTVSNASGIA 242

Query: 249 ALLRLAIDKMGF-DQLDLRYLTMIARNF 275
               L        D+  +  L  I+   
Sbjct: 243 GRDYLFDILESIADKNAVEALKKISELH 270


>gi|296134456|ref|YP_003641703.1| Sigma 54 interacting domain protein [Thermincola sp. JR]
 gi|296033034|gb|ADG83802.1| Sigma 54 interacting domain protein [Thermincola potens JR]
          Length = 649

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 58/277 (20%), Positives = 97/277 (35%), Gaps = 57/277 (20%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV-- 74
           + +  LRP + EE  GQ  A  +L      +K  +    H++  GPPG+GKTT A++   
Sbjct: 168 SAMEALRPTSFEEIVGQERAIRSL-----LSKIVSPFPQHIILYGPPGVGKTTAARLALK 222

Query: 75  -AREL-------------------GVNFRSTSGPVIAKA---------GDLA-------- 97
            A+E+                     + R  + P++             DLA        
Sbjct: 223 KAKEIPGSPFDEDAPFVEVDGTTLRWDPRDVTNPLLGSVHDPIYQGARRDLADTGIPEPK 282

Query: 98  -ALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG-EGPSARSVKINLSR-- 153
             L+T      VLFIDEI  +  +++  L   +ED ++        P+  ++   + +  
Sbjct: 283 LGLVTEAHGG-VLFIDEIGEMDPMLQNKLLKVLEDKRVTFDSAYYDPTDPNIPQYIKKIF 341

Query: 154 -------FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDE 206
                  F LI ATTR      P        +        D++ I+++ A    + + D 
Sbjct: 342 EEGAPADFVLIGATTRGQEDIPPAIRSRCAEVFFEPLTPSDIEEIIRKAAVKLKVQLDDR 401

Query: 207 AACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
              EI        R A  +L      A          
Sbjct: 402 -VPEIISEYTIEGRKAINILADAYGLALYKRQNAGDE 437


>gi|167390711|ref|XP_001739466.1| replication factor C subunit [Entamoeba dispar SAW760]
 gi|165896845|gb|EDR24167.1| replication factor C subunit, putative [Entamoeba dispar SAW760]
          Length = 539

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 78/226 (34%), Gaps = 37/226 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP T +   G      +LK FI A       + H+LF GPPG GKTT A  + +
Sbjct: 4   PWVEKYRPSTTDGIFGHEYILESLKQFINA-----NQIPHMLFYGPPGTGKTTTALAIVK 58

Query: 77  ELGVNFRST-----SGPVIAKAGDLAALLTN-LEDRDV-------LFIDEIHRLSIIVEE 123
           +L     S      +         +   + +    R +       + +DE  +L+   + 
Sbjct: 59  QLCGTKFSALVLELNASDERGIDVVRDQIKSFASTRTLYTNCTKFIILDESDKLTKDAQN 118

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
            L   +E F                   +    I     V L+T  +Q R    +R    
Sbjct: 119 ALRRTLEQFS------------------ANCRFIFICNEVHLITPAIQSRCA-KMRFGPL 159

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
               L  IV+      G+ + D+A   I   S+G  R     L+ +
Sbjct: 160 SPNALTKIVENITTKEGMEIDDDAKKSIIEISKGDARSIINTLQAL 205


>gi|316939388|gb|ADU73422.1| Sigma 54 interacting domain protein [Clostridium thermocellum DSM
           1313]
          Length = 558

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 63/336 (18%), Positives = 105/336 (31%), Gaps = 73/336 (21%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +      RP +L+E  GQ +    L+     A        HV+  GPPG+GKT  A+V+ 
Sbjct: 56  EPLSEKTRPTSLKEIVGQSQGIKALR-----AALCGPNPQHVIIYGPPGVGKTAAARVIL 110

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDR----------------------------- 106
            E   +  S      AK  ++ A     ++R                             
Sbjct: 111 EEAKKSELSPFKKE-AKFVEVDATTLRFDERGIADPLIGSVHDPIYQGAGAYGVAGIPQP 169

Query: 107 ----------DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSR--- 153
                      +LF+DEI  L  I    L   +ED  + L   E     S   N+     
Sbjct: 170 KPGAVTKAHGGILFLDEIGELHPIQMNKLLKVLEDRVVYL---ESAYYSSEDKNIPPHIH 226

Query: 154 ----------FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAV 203
                     F L+ ATTR             + I        ++  I +  A+  G A+
Sbjct: 227 EIFQKGLPADFRLVGATTRTADEIPAAIRSRCVEIYFRPLTPSEIAEIAKNAAQKGGFAM 286

Query: 204 TDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQL 263
            +  A  +A  ++   R A  +++     A V   + I R+  +  +            +
Sbjct: 287 EEGCAELVAKYAQN-GREAVHIVQIAGGVAIVEGRRLIERKDIEWVIEFGHYSPR----I 341

Query: 264 DLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           D +          G  VG     A        + ++
Sbjct: 342 DKKVT-------KGEQVGCINGLAVFGNSTGTVIEI 370


>gi|163942219|ref|YP_001647103.1| sporulation protease LonB [Bacillus weihenstephanensis KBAB4]
 gi|229013687|ref|ZP_04170816.1| ATP-dependent protease La [Bacillus mycoides DSM 2048]
 gi|229062166|ref|ZP_04199490.1| ATP-dependent protease La [Bacillus cereus AH603]
 gi|229135317|ref|ZP_04264111.1| ATP-dependent protease La [Bacillus cereus BDRD-ST196]
 gi|163864416|gb|ABY45475.1| Sporulation protease LonB [Bacillus weihenstephanensis KBAB4]
 gi|228648140|gb|EEL04181.1| ATP-dependent protease La [Bacillus cereus BDRD-ST196]
 gi|228717149|gb|EEL68825.1| ATP-dependent protease La [Bacillus cereus AH603]
 gi|228747609|gb|EEL97483.1| ATP-dependent protease La [Bacillus mycoides DSM 2048]
          Length = 556

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 59/288 (20%), Positives = 97/288 (33%), Gaps = 56/288 (19%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           R VS  +     +RP +  +  GQ +   +LK     A        HV+  GPPG+GKT 
Sbjct: 51  REVSLTEPLAEKVRPTSFIDIVGQEDGIKSLK-----AALCGPNPQHVIIYGPPGVGKTA 105

Query: 70  LAQVVARELGVNFRSTS----------------------GPVIAKAGD------------ 95
            A++V  E   N +S                         P+I    D            
Sbjct: 106 AARLVLEEAKRNPKSPFRTNATFIELDATTARFDERGIADPLIGSVHDPIYQGAGAMGQA 165

Query: 96  -----LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL----MVGEGPSARS 146
                    +T+     +LFIDEI  L  I    +   +ED ++ L       E     +
Sbjct: 166 GIPQPKKGAVTDAHGG-ILFIDEIGELHPIQMNKMLKVLEDRKVFLESAYYSEENSMIPT 224

Query: 147 VKINL------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
              ++      + F L+ ATTR      P      + +     + E+++ + +  A    
Sbjct: 225 YIHDIFQKGLPADFRLVGATTRSPEEIPPAIRSRCLEVFFRELDTEEIQKVAKNAADKVE 284

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           + V +     I M +R   R A  L++     A       I  E  + 
Sbjct: 285 MQVGENGIEMIGMYARN-GREAINLVQISAGMAINEERPFIKDEDIEW 331


>gi|282895316|ref|ZP_06303518.1| AAA ATPase, central region protein [Raphidiopsis brookii D9]
 gi|281199622|gb|EFA74482.1| AAA ATPase, central region protein [Raphidiopsis brookii D9]
          Length = 663

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 50/276 (18%), Positives = 98/276 (35%), Gaps = 27/276 (9%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +      RP++  E  GQ    + L   I   K         LF GP G GKT+ A+++A
Sbjct: 4   EPLHHKYRPKSFAELVGQEAIATTLTNAISLVKVA----PAYLFTGPRGTGKTSSARILA 59

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAME 130
           + L         P      D+   +T     DV+ ID      +  +  ++E+  +  ++
Sbjct: 60  KSLNCLQSGHPTPTPCGVCDICQGITKGYSLDVIEIDAASNTGVDNIRELIEKAQFAPVQ 119

Query: 131 DFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
                 ++ E             ++++        + ATT    +   +  R        
Sbjct: 120 CRYKVYVIDECHMLSTAAFNALLKTLEEPPKHVVFVLATTDPQRVLPTIISRCQ-RFDFR 178

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA-EVAHAKT 240
             ++E +   + + A    + ++ +A   +A  S+G  R A  LL ++     +V+  + 
Sbjct: 179 RIQLEAMVKHLSKIAHNENIPISQDAITLVAQISQGGLRDAESLLDQLALLPGDVSPEQV 238

Query: 241 IT-----REIADAALLRLAIDKMGFDQLD--LRYLT 269
                   E    ALL+        + LD   + L 
Sbjct: 239 WDLVGSVSEKDLFALLQAIAQNDSENVLDNTRKILD 274


>gi|171186449|ref|YP_001795368.1| replication factor C small subunit [Thermoproteus neutrophilus
           V24Sta]
 gi|170935661|gb|ACB40922.1| Replication factor C [Thermoproteus neutrophilus V24Sta]
          Length = 328

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 53/228 (23%), Positives = 88/228 (38%), Gaps = 36/228 (15%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E       RPR+ +E     E  S L+ F+     R+  + H+LF GPPG GKTT+A V+
Sbjct: 3   ELFWFEKYRPRSFDEVVDLEEVKSRLREFV-----RSGNMPHLLFYGPPGTGKTTMALVL 57

Query: 75  AR------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           AR            EL  +       +  +  + A          ++ +DE   ++   +
Sbjct: 58  ARELYGEYWRENTLELNASDERGINVIRERVKEFARTAPIKAPFKLVILDEADNMTSDAQ 117

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           + L   ME                +    +RF L+A    V  + +P+  R  +  R + 
Sbjct: 118 QALRRIME----------------IYAQNTRFILLA--NYVSRIIDPIISRCAV-FRFSP 158

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
                +   ++  AK  G+ V ++A   I   S G  R A  LL+   
Sbjct: 159 MPRSLMAERLKYIAKREGIEVGEDALDLIYELSEGDMRKAINLLQVAA 206


>gi|146304798|ref|YP_001192114.1| replication factor C small subunit [Metallosphaera sedula DSM 5348]
 gi|145703048|gb|ABP96190.1| replication factor C small subunit [Metallosphaera sedula DSM 5348]
          Length = 326

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 56/279 (20%), Positives = 101/279 (36%), Gaps = 43/279 (15%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
            E       RPR+L++   Q +    LK F++      + + H+LF GPPG GKTT A  
Sbjct: 3   DEILWAEKYRPRSLDDIVNQRDIVERLKHFVK-----EKNMPHLLFAGPPGTGKTTSALA 57

Query: 74  VAR------------ELGVNFRSTSGPVIAKAGDLAALLT--NLEDRDVLFIDEIHRLSI 119
           +              EL  +       +  K  + A  +T  ++  + VL +DE   ++ 
Sbjct: 58  LVHDLYGENYEQYLLELNASDERGIDVIRNKVKEFARTVTPGSVPFKTVL-LDEADNMTA 116

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
             ++ L   ME      +  E                I A   +  + +P+Q R  +  R
Sbjct: 117 DAQQALRRTME------LYTETTRF------------ILACNYLSKIIDPIQSRTAL-FR 157

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
               + ED+ + ++   K  G+    +A   I   + G  R A  +L+    + +V    
Sbjct: 158 FYPLKKEDVISRLEFIMKQEGVQYDPKALDVIYDVTNGDMRKAINVLQAASAYGKVTQEA 217

Query: 240 TITREIADAALLRLAIDKMGFDQ--LDLR--YLTMIARN 274
                          + K+      +D R   L++I   
Sbjct: 218 VFKVLGLAQPKEVRDMVKLALQGRFMDARSKLLSLIINY 256


>gi|307717504|gb|ADN88805.1| recombination factor protein [Listeria welshimeri]
 gi|307717526|gb|ADN88816.1| recombination factor protein [Listeria welshimeri]
 gi|307717532|gb|ADN88819.1| recombination factor protein [Listeria welshimeri]
 gi|307717554|gb|ADN88830.1| recombination factor protein [Listeria welshimeri]
 gi|307717556|gb|ADN88831.1| recombination factor protein [Listeria welshimeri]
          Length = 191

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/202 (22%), Positives = 81/202 (40%), Gaps = 17/202 (8%)

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           G+GKT++A  +A      FR+ +     K   ++ A    +    +L +DE+HRL    +
Sbjct: 1   GIGKTSIASAIAGSTKYAFRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQ 60

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           + L P +E   + +++G   S   + IN +    I + T++  L     +   I +    
Sbjct: 61  DFLLPLLESGAI-ILIGATTSNPYIAINPA----IRSRTQIFELKPLTVEDIMITMDRAL 115

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT-- 240
            + E       RG     + + + A    A  S G  R A   L      +E        
Sbjct: 116 LDKE-------RGLGNYQVEIDEFAKKHFATASNGDVRSALNALELAVISSEANEEGIIH 168

Query: 241 ITREIADAALLRL--AIDKMGF 260
           IT ++A+  L +   A DK G 
Sbjct: 169 ITLDVAEECLQKKSLAHDKDGD 190


>gi|259486085|tpe|CBF83646.1| TPA: subunit of heteropentameric Replication factor C (RF-C)
           (Eurofung) [Aspergillus nidulans FGSC A4]
          Length = 387

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 52/274 (18%), Positives = 89/274 (32%), Gaps = 56/274 (20%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
              S+    +   RP+TL++   Q      L+  ++A+      L H+LF GPPG GKT+
Sbjct: 28  EEQSRLQPWVEKYRPKTLDDVAAQDHTTKVLQRTLQAS-----NLPHMLFYGPPGTGKTS 82

Query: 70  LAQVVAR-------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDR---------- 106
               +A+             EL  +     G V  K    A +  +              
Sbjct: 83  TILALAKSLFGPALYRSRILELNASDERGIGIVREKVKGFARVQLSHPTGLDAEYFEKYP 142

Query: 107 ----DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA-TT 161
                ++ +DE   ++   +  L   ME +                   SR T       
Sbjct: 143 CPPFKIIILDEADSMTQDAQSALRRTMEQY-------------------SRITRFCLVCN 183

Query: 162 RVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRI 221
            V  +  PL  R     R    +       + + A+L  L++ +    ++   S G  R 
Sbjct: 184 YVTRIIEPLASRCS-KFRFKPLDNSAAGDRLAQIAQLEKLSLENGVVDKLISCSDGDLRR 242

Query: 222 AGRLLR---RVRDFAEVAHAKTITREIADAALLR 252
           A   L+   R+   A+ A       E+ D     
Sbjct: 243 AITYLQSAARLVGAAKAAKDGDEDEEMKDQGSDM 276


>gi|115496354|ref|NP_001068826.1| replication factor C subunit 5 [Bos taurus]
 gi|79160183|gb|AAI08106.1| Replication factor C (activator 1) 5, 36.5kDa [Bos taurus]
 gi|296478479|gb|DAA20594.1| replication factor C 5 [Bos taurus]
          Length = 316

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 75/225 (33%), Gaps = 38/225 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA- 75
             +   RP+TL++     +  S ++ FI       + L H+L  GPPG GKT+     A 
Sbjct: 20  PWVEKYRPQTLDDLISHQDILSTIQKFIS-----EDRLPHLLLYGPPGTGKTSTILACAK 74

Query: 76  -----RELGVNFRSTSGPVIAKAGDLAA-LLTNLEDRDVL-------FIDEIHRLSIIVE 122
                +E G      +         +   +L+    R +         +DE   ++   +
Sbjct: 75  QLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQ 134

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             L   +E F       E      +   LS+                LQ R     R   
Sbjct: 135 NALRRVIEKF------TENTRFCLICNYLSKIIP------------ALQSRC-TRFRFGP 175

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
              E +   ++   +   + ++++    +   S G  R A  +L+
Sbjct: 176 LTPELMVPRLEHVVEEEKVDISEDGMKALITLSSGDMRRALNILQ 220


>gi|189485278|ref|YP_001956219.1| DNA polymerase III subunit gamma/tau [uncultured Termite group 1
           bacterium phylotype Rs-D17]
 gi|170287237|dbj|BAG13758.1| DNA polymerase III subunit gamma/tau [uncultured Termite group 1
           bacterium phylotype Rs-D17]
          Length = 531

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 54/254 (21%), Positives = 91/254 (35%), Gaps = 29/254 (11%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+  +E  GQ      LK  I   +         LF GP G GKTT+A+++A+ L
Sbjct: 7   ARKFRPQNFDEVVGQEHISQTLKNSISEKRIAHAY----LFSGPRGCGKTTMARILAKAL 62

Query: 79  GVNFRSTSGPVIAKAG--DLAALLTNLEDRDVLFIDEIHR-----LSIIVEEILYPAMED 131
                  +GP I   G  +    ++     DVL ID         + ++ E + +     
Sbjct: 63  NCK----NGPTIKPCGVCENCVEISKSSSVDVLEIDGASNNGIDDIRVLRENVKFSTASS 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++   +    I ATT    +   +  R     R   
Sbjct: 119 KYKIYIIDEAHQITAQAFNALLKTLEEPPAHVIFIMATTEQHKIPITILSRCQ-RYRFKL 177

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
               ++   ++   +  G  + DEA   +   S G+ R A  LL    D A  ++   IT
Sbjct: 178 ISGAEMVCAIKSIGQEEGFEIDDEALNIVTSASGGSMRDALSLL----DQAVSSNTGRIT 233

Query: 243 REIADAALLRLAID 256
            +     L  L  D
Sbjct: 234 GDYMRGLLGLLPKD 247


>gi|18976464|ref|NP_577821.1| replication factor C large subunit [Pyrococcus furiosus DSM 3638]
 gi|42559538|sp|Q9UWR2|RFCL_PYRFU RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit;
           AltName: Full=PfuRFC large subunit
 gi|6539526|dbj|BAA88155.1| replication factor C large subunit [Pyrococcus furiosus DSM 3638]
 gi|18892003|gb|AAL80216.1| replication factor C, large subunit [Pyrococcus furiosus DSM 3638]
          Length = 479

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 45/250 (18%), Positives = 85/250 (34%), Gaps = 19/250 (7%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAA-KARAEALDHVLFVGPPGLGKTTLAQ 72
            E   +   RP+ L E   Q EA   ++ +IE+           +L  GPPG GKTT   
Sbjct: 2   PELPWVEKYRPKKLSEIVNQEEAIEKVRAWIESWLHGHPPKKKALLLAGPPGSGKTTTVY 61

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEIL 125
            +A E        +         ++  +          + R ++F+DE   +     + +
Sbjct: 62  ALANEYNFEVIELNASDERTYEKISRYVQAAYTMDILGKRRKIIFLDEADNIEPSGAKEI 121

Query: 126 YPAMEDFQLDLMVGEG-----PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
              ++  +  +++        P     K  L  +  +     +  L   L+ R GI +  
Sbjct: 122 AKLIDKAKNPIIMAANKYWEVPKEIREKAELVEYKRLTQRDVMNALIRILK-REGITVPK 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
                E L  I +R +     A+ D     +      T  +A R + +    A      +
Sbjct: 181 -----EILLEIAKRSSGDLRAAINDLQTVVVGGYEDATQVLAYRDVEKTVFQALGLVFGS 235

Query: 241 ITREIADAAL 250
              + A  A+
Sbjct: 236 DNAKRAKMAM 245


>gi|225718574|gb|ACO15133.1| Replication factor C subunit 2 [Caligus clemensi]
          Length = 325

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 55/262 (20%), Positives = 88/262 (33%), Gaps = 39/262 (14%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           S         I   RP+T ++  G  E  S LKVF E          +++  GPPG+GKT
Sbjct: 3   SSQTIDRAPWIEKYRPKTFDDIVGNSETVSRLKVFSE-----DGNPPNIIIAGPPGVGKT 57

Query: 69  TLAQVVAR------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEI 114
           T    +AR            EL  +       V  K    A     L      ++ +DE 
Sbjct: 58  TTILCLARALLGGSFKDAVLELNASNERGIDVVRNKIKMFAQQKVTLPQSRHKIIVLDEA 117

Query: 115 HRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRF 174
             ++   ++ L   ME +                 + +RF    A      +  P+Q R 
Sbjct: 118 DSMTEAAQQALRRTMEIYS----------------DTTRF--CLACNSSEKVIEPIQSRC 159

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD-FA 233
            +       + E L  +++      G++ T E    I   ++G  R A   L+   D F 
Sbjct: 160 AMLRYSRPSDAEVLAQVIK-VCDKEGVSYTSEGLEAIVFTAQGDMRQALNNLQSTHDGFG 218

Query: 234 EVAHAKTITREIADAALLRLAI 255
           +V              LL   +
Sbjct: 219 KVISENVFRVCDEPHPLLVKDM 240


>gi|221633732|ref|YP_002522958.1| DNA polymerase III subunit gamma/tau [Thermomicrobium roseum DSM
           5159]
 gi|221156252|gb|ACM05379.1| DNA polymerase III subunit gamma/tau [Thermomicrobium roseum DSM
           5159]
          Length = 562

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 57/288 (19%), Positives = 106/288 (36%), Gaps = 27/288 (9%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
              RP+T EE  GQ      L+  +   +         LF GP G GKT+ A+++A+ + 
Sbjct: 8   RKYRPQTFEELVGQEAIARTLRNAVALDRVAHAY----LFCGPRGTGKTSTARLLAKAVN 63

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQL 134
                       + G   ++ T     D++ ID      +  +  + E++ Y  +E    
Sbjct: 64  CRDADPWRRPCNQCGACRSIATGTAV-DIIEIDAASNRGVDDIRDLREKVKYAPVELRTK 122

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             ++ E             ++++        + ATT    L   +  R           +
Sbjct: 123 FYIIDEAHQLTRDAFNAFLKTLEEPPPHVVFVLATTEPDKLPETVASRCQ-RFDFRRLPV 181

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA-EVAHAKTITRE 244
           + +   ++      G+   D+    IA R+ G+ R A  LL R+  FA +  +   IT E
Sbjct: 182 DRMVERLRFVCLREGIEAPDDVLALIARRAAGSLRDALGLLERLAVFASDGENEPVITLE 241

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEP 292
           +A   L     D++      L  +T IA    G  + +   +A   + 
Sbjct: 242 LARQVLGGSRDDRL------LDLVTAIADRDAGRALRLVAEAADAGDD 283


>gi|146423599|ref|XP_001487726.1| hypothetical protein PGUG_01103 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 327

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 81/246 (32%), Gaps = 40/246 (16%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +S E   +   RP  L++  G  E    LK+      A+   + H++  G PG+GKTT  
Sbjct: 6   LSLELPWVEKYRPHKLDDIVGNEETVERLKLI-----AQDGNMPHMIISGLPGIGKTTSI 60

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLA---------------ALLTNLEDRDVLFIDEIHR 116
             +A EL          +   A D                  +L       ++ +DE   
Sbjct: 61  HCLAYELLGKTMYDQATLELNASDDRGIDVVRNKIKQFAQTKILLPPGRHKIIILDEADS 120

Query: 117 LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
           ++   ++ L   ME +                 N +RF    A  +   +  PLQ R  I
Sbjct: 121 MTPGAQQALRRTMEIYS----------------NTTRFAF--ACNQSSKIIEPLQSRCAI 162

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA-GRLLRRVRDFAEV 235
                  + + L  +++  AK   +    +    +   + G  R A   +   V  F  V
Sbjct: 163 LRYNKLADDQVLSRLLE-IAKAEDVKYNSQGLQALIFTAEGDMRQAINNMQSTVAGFGFV 221

Query: 236 AHAKTI 241
                 
Sbjct: 222 DDVNVF 227


>gi|307717534|gb|ADN88820.1| recombination factor protein [Listeria marthii]
          Length = 191

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 45/202 (22%), Positives = 83/202 (41%), Gaps = 17/202 (8%)

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           G+GKT++A  +A      FR+ +     K   ++ A    +    +L +DE+HRL    +
Sbjct: 1   GIGKTSIASAIAGSTKYAFRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQ 60

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           + L P +E   + +++G   S   + IN +    I + T++  L     +   I      
Sbjct: 61  DFLLPLLESGAI-ILIGATTSNPYIAINPA----IRSRTQIFELKPLTVEDIMI------ 109

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT-- 240
             ++   +  +RG     + + + A    A  S G  R A   L      +E  +     
Sbjct: 110 -TMDRALSDKERGLGDYHVEIDEVAKKHFATASNGDVRSALNALELAVISSEPNNDGVIR 168

Query: 241 ITREIADAALLRL--AIDKMGF 260
           IT ++A+  L +   A DK G 
Sbjct: 169 ITLDVAEECLQKKSLAHDKDGD 190


>gi|217961963|ref|YP_002340533.1| ATP-dependent protease LonB [Bacillus cereus AH187]
 gi|217065656|gb|ACJ79906.1| ATP-dependent protease LonB [Bacillus cereus AH187]
          Length = 557

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 57/288 (19%), Positives = 97/288 (33%), Gaps = 56/288 (19%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           R +S  +     +RP +  +  GQ +   +LK     A        HV+  GPPG+GKT 
Sbjct: 52  REISLTEPLAEKVRPTSFLDIVGQEDGIKSLK-----AALCGPNPQHVIIYGPPGVGKTA 106

Query: 70  LAQVVARELGVNFRSTS----------------------GPVIAKAGD------------ 95
            A++V  E   N +S                         P+I    D            
Sbjct: 107 AARLVLEEAKRNPKSPFRTNATFIELDATTARFDERGIADPLIGSVHDPIYQGAGAMGQA 166

Query: 96  -----LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL----MVGEGPSARS 146
                    +T+     +LFIDEI  L  I    +   +ED ++ L       E     +
Sbjct: 167 GIPQPKKGAVTDAHGG-ILFIDEIGELHPIQMNKMLKVLEDRKVFLESAYYSEENAMIPT 225

Query: 147 VKINL------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
              ++      + F L+ ATTR      P      + +     + E+++ + +  A    
Sbjct: 226 YIHDIFQKGLPADFRLVGATTRSPEEIPPAIRSRCLEVFFRELDTEEIQKVAKNAADKVE 285

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           + + +     I M +R   R A  L++     A       I  E  + 
Sbjct: 286 MQIGENGIEMIGMYARN-GREAINLVQISAGMAINEERPFIKDEDIEW 332


>gi|50513624|pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
           (Replication Factor C, Rfc) Bound To The Dna Sliding
           Clamp (Proliferating Cell Nuclear Antigen, Pcna)
          Length = 353

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/258 (16%), Positives = 81/258 (31%), Gaps = 48/258 (18%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L +     +   +   RP+ L+E T Q  A + LK  +++A      L H+LF GPPG G
Sbjct: 16  LAAEQSLAQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSA-----NLPHMLFYGPPGTG 70

Query: 67  KTTLAQVVARE------LGVNFRSTSGPVIAKAGDLAALLTNLEDRD------------- 107
           KT+    + +E      +       +         +   + N                  
Sbjct: 71  KTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYP 130

Query: 108 -----VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTR 162
                ++ +DE   ++   +  L   ME +                  ++RF        
Sbjct: 131 CPPYKIIILDEADSMTADAQSALRRTMETYS----------------GVTRF--CLICNY 172

Query: 163 VGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
           V  + +PL  +     R    +  +    ++  ++   +   D     I   S G  R  
Sbjct: 173 VTRIIDPLASQCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRG 231

Query: 223 GRLLRRVRDFAEVAHAKT 240
             LL+     A+      
Sbjct: 232 ITLLQSASKGAQYLGDGK 249


>gi|239618378|ref|YP_002941700.1| DNA polymerase III, subunits gamma and tau [Kosmotoga olearia TBF
           19.5.1]
 gi|239507209|gb|ACR80696.1| DNA polymerase III, subunits gamma and tau [Kosmotoga olearia TBF
           19.5.1]
          Length = 503

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 54/249 (21%), Positives = 81/249 (32%), Gaps = 54/249 (21%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVV 74
           +      RP+  EE  GQ +    LK  IE      +++ H  +F GP G GKTT A+++
Sbjct: 6   EVLYRKYRPKKFEEIVGQDQVKIVLKKAIE-----NQSIAHAYIFFGPRGTGKTTTARIL 60

Query: 75  ARELGV-----------------------------NFRSTSGPVIAKAGDLAALLTNLED 105
           A+ L                                        I K  D A+    +  
Sbjct: 61  AKALNCLSHDDKPCGKCESCIAVDNNSHMDVIEIDAASYRGIDEIRKIRDAASYRPTMGH 120

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
             V  +DE H L+      L   +E+    ++                   I ATT +  
Sbjct: 121 YKVYIVDEFHMLTREAFNALLKTLEEPPEHIV------------------FILATTNLEK 162

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           +   +  R  +           +   +QR  K      T EA   IA  ++G  R A  L
Sbjct: 163 VPETILSRCQV-FTFKPLSEGQIVEYLQRILKEEKKTYTVEALKIIAKAAKGGMRDAVNL 221

Query: 226 LRRVRDFAE 234
           L R   F E
Sbjct: 222 LERALVFGE 230


>gi|119493255|ref|ZP_01624095.1| AAA ATPase, central region [Lyngbya sp. PCC 8106]
 gi|119452728|gb|EAW33906.1| AAA ATPase, central region [Lyngbya sp. PCC 8106]
          Length = 683

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 63/336 (18%), Positives = 116/336 (34%), Gaps = 47/336 (13%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +      RP+T  +  GQ    + L      A  R   +   LF GP G GKT+ A+++A
Sbjct: 4   EPLHHKYRPQTFADLVGQDAIATTL----TNAIHRGRIVPAYLFTGPRGTGKTSSARILA 59

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAME 130
           + L                 +   +TN    DV+ ID      +  +  ++E   +  ++
Sbjct: 60  KSLNCLSTDEPTATPCGTCAVCKGITNGSTLDVIEIDAASNTGVDNIRELIERAQFAPVQ 119

Query: 131 DFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
                 ++ E             ++++    R   + ATT    +   +  R        
Sbjct: 120 CRYKVYVIDECHMLSTAAFNALLKTLEEPPERVVFVLATTDPQRVLPTIISRCQ-RFDFR 178

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA-EVAHAKT 240
              +E +   +Q  A+   + +T EA   +A  ++G  R A  LL ++   A E+   + 
Sbjct: 179 RIPLEPMVQHLQFIAEKEQIPITLEAIKMVAQIAQGGLRDAESLLDQLSLLAGEINVEQV 238

Query: 241 IT-----REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDA 295
                   E     LL+    +   D +D  Y+  +                   EP   
Sbjct: 239 WDLVGAVPERDLLELLKAIASENSTDIID--YIRQLLNRGR--------------EPLVV 282

Query: 296 IEDLIEPYMIQQGFIQRTPRGR----LLMPIAWQHL 327
           +++L E Y  +   I +T   R     L    W+ L
Sbjct: 283 LQNLAEFY--RDLLIAKTAPQRSDLVKLTQPTWEEL 316


>gi|159041490|ref|YP_001540742.1| replication factor C [Caldivirga maquilingensis IC-167]
 gi|157920325|gb|ABW01752.1| Replication factor C [Caldivirga maquilingensis IC-167]
          Length = 348

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 58/227 (25%), Positives = 94/227 (41%), Gaps = 37/227 (16%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           +E   +   RP  L +   Q      L  F+     R   L H+LF GPPG+GKTT A  
Sbjct: 5   KELLWVERFRPVRLVDLVDQEGVKVGLMEFV-----RRGDLPHLLFYGPPGVGKTTAALA 59

Query: 74  VARE-LGVNFRSTSGP-----------VIAKAGDLAALL-TNLEDRDVLFIDEIHRLSII 120
           +ARE  G ++RS+              +  K  + A  + T      ++ +DE   ++  
Sbjct: 60  LARELYGDSWRSSVLELNASDERGIDVIREKVKEFARTIPTGPVPFKLVILDEADNMTSD 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            ++ L   ME +                 + +RF L+A    +  +  P+Q R  I  R 
Sbjct: 120 AQQALRRIMEMY----------------ASTTRFILLA--NYISGIIEPIQSRCAI-FRF 160

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
           N    E +   +++ AK TG+ VT++    I   S+G  R A   L+
Sbjct: 161 NPLPKEAVIERLRQIAKETGVEVTEDGLEAIWEVSQGDMRKAINTLQ 207


>gi|260102437|ref|ZP_05752674.1| DNA polymerase III [Lactobacillus helveticus DSM 20075]
 gi|260083757|gb|EEW67877.1| DNA polymerase III [Lactobacillus helveticus DSM 20075]
          Length = 595

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 83/224 (37%), Gaps = 21/224 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPRT +   GQ      LK  I     R +     LF GP G GKT+ A++ A+ L    
Sbjct: 11  RPRTFDSVIGQESITDTLKNAI----KRGKVSHAFLFAGPRGTGKTSCAKIFAKALNCTN 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P    A  +AA   ++   D++ ID      +  +  I +++ Y   E      +
Sbjct: 67  LQDGEPCNECANCIAADKGSMP--DIMEIDAASNNGVDEIREIRDKVKYAPTEGKYKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT +  +   +  R            +DL
Sbjct: 125 IDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRI-SKDDL 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           +  ++       +   D+A   IA  + G  R A  +L ++  +
Sbjct: 184 EKRMKYILDQENIKYEDKALAVIAQVADGGMRDALSILDQLLSY 227


>gi|78043822|ref|YP_358912.1| putative ATP-dependent protease La [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77995937|gb|ABB14836.1| putative ATP-dependent protease La [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 632

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 62/269 (23%), Positives = 95/269 (35%), Gaps = 57/269 (21%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +S LRPR+  E  GQ  A   L      AK  +    H+L  GPPG+GKTT A++   E 
Sbjct: 156 MSFLRPRSFSEIVGQERAIRAL-----LAKLSSPFPQHILLYGPPGVGKTTAARLCLEEA 210

Query: 79  G----------------------VNFRSTSGPVIAKA---------GDLAA--------- 98
                                   + R  + P++             DLA          
Sbjct: 211 KKRKGSPFAPDAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKLG 270

Query: 99  LLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL----DLMVGEGPSARSVKINL--- 151
           L+T      +LFIDEI  L  +++  L   +ED ++         + P+       +   
Sbjct: 271 LVTEAHGG-ILFIDEIGELDPLLQNKLLKVLEDKRVYFDSAYYDPDDPNVPQYIKKIFEE 329

Query: 152 ---SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAA 208
              + F LI ATTR     NP        I        ++K IV + A+   + +  +  
Sbjct: 330 GAPADFILIGATTRSPEEINPALRSRCAEIFFEPLGPAEIKEIVLKAAQKLNVKLAPDVP 389

Query: 209 CEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
             IA  +    R A  +L      A   +
Sbjct: 390 ELIAGYT-VEGRKAVNILADGYAIARFKN 417


>gi|220928261|ref|YP_002505170.1| Sigma 54 interacting domain protein [Clostridium cellulolyticum
           H10]
 gi|219998589|gb|ACL75190.1| Sigma 54 interacting domain protein [Clostridium cellulolyticum
           H10]
          Length = 560

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 58/295 (19%), Positives = 97/295 (32%), Gaps = 56/295 (18%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           R++   +      RP +L +  GQ +    L+     A        HV+  GPPG+GKT 
Sbjct: 50  RDIHLTEPLSEKTRPASLSDIVGQEQGLKALR-----AALCGMNPQHVIIYGPPGVGKTA 104

Query: 70  LAQVVARELGVNFRSTS----------------------GPVIAKAGD------------ 95
            A+V+  E   N  S                         P+I    D            
Sbjct: 105 AARVILEEAKKNSMSPFRKEAKFIEMDATTLRFDERGIADPLIGSVHDPIYQGAGSYGVA 164

Query: 96  -----LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL----MVGEGPSARS 146
                    +T      +LFIDEI  L  I    L   +ED ++ L       E  +  S
Sbjct: 165 GIPQPKQGAVTKAHGG-ILFIDEIGELHPIQMNKLLKVLEDRKVFLESAYYSAEDSNIPS 223

Query: 147 VKINL------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
              ++      + F L+ ATTRV            + I       +++  I +  A   G
Sbjct: 224 HIHDIFQKGLPADFRLVGATTRVPDEIPAAIRSRCVEIHFRSLRADEICKICENAAAKGG 283

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255
             + ++   E+  R     R A  +++     + V +  TI  +  +  +     
Sbjct: 284 F-ILNQGCSELVARYAQNGRDAVNIIQIAGGVSMVENRSTIDIKDIEWVIEFGHY 337


>gi|227830341|ref|YP_002832121.1| replication factor C large subunit [Sulfolobus islandicus L.S.2.15]
 gi|229579158|ref|YP_002837556.1| replication factor C large subunit [Sulfolobus islandicus
           Y.G.57.14]
 gi|284997766|ref|YP_003419533.1| AAA ATPase, central domain protein [Sulfolobus islandicus L.D.8.5]
 gi|259585236|sp|C3MQ13|RFCL_SULIL RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|259585591|sp|C3NE95|RFCL_SULIY RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|227456789|gb|ACP35476.1| AAA ATPase central domain protein [Sulfolobus islandicus L.S.2.15]
 gi|228009872|gb|ACP45634.1| AAA ATPase central domain protein [Sulfolobus islandicus Y.G.57.14]
 gi|284445661|gb|ADB87163.1| AAA ATPase, central domain protein [Sulfolobus islandicus L.D.8.5]
          Length = 405

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 81/217 (37%), Gaps = 32/217 (14%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPR+L++   Q  A   L+ +IE+          VL  GPPG+GKTTLA+ +A +  +  
Sbjct: 9   RPRSLKDVENQDGAKKELQEWIESWLNGKPNAKAVLLHGPPGVGKTTLAEALAHDYNLEL 68

Query: 83  RSTSGPVIAKAGDLAALLTNLE--------DRDVLFIDEIHRLSIIVE----EILYPAME 130
              +     K  D+  +                ++ +DE+  +++  +    + +   +E
Sbjct: 69  LEMNASDSRKLQDIKGVAEKASVYGSIFGTRGKLILLDEVDGINVREDTGAIQGILELIE 128

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
             +  +++            L   T +    ++G                       L+ 
Sbjct: 129 KTKYPIIMTANDPWNPALRELRNKTKMVGLNKLGKY--------------------PLRR 168

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
           ++++  +   +   DEA   I   S G  R A  +L+
Sbjct: 169 LLKKICQAEKIICDDEALNYIIDTSEGDARYAINMLQ 205


>gi|85000801|ref|XP_955119.1| replication factor [Theileria annulata strain Ankara]
 gi|65303265|emb|CAI75643.1| replication factor, putative [Theileria annulata]
          Length = 299

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 81/228 (35%), Gaps = 38/228 (16%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           D  I   RP TLEE  G  E    L+ FI    A+   + ++L  GPPG GKTT    +A
Sbjct: 6   DIWIEKYRPSTLEEIIGNPEITKRLQ-FI----AKEGNMPNLLLCGPPGTGKTTSVLCLA 60

Query: 76  RELGVNFR-----STSGPVIAKAGDLAALLTNLEDR---------DVLFIDEIHRLSIIV 121
           RE+  +         +         +   + N   +          ++ +DE+  ++   
Sbjct: 61  REMLGSHFKSAVVELNASDDRGVDVVRENIKNFAKKSLILPANKHKIVILDEVDSMTEPA 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           ++ L   ME +                   S      A  +   +  P+Q R  +     
Sbjct: 121 QQALRRIMEIYS------------------STTRFALACNQSNKIIEPIQSRCAVIRYSK 162

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
             + + LK +V     L  L  TDE    +   + G  R A   L+ V
Sbjct: 163 LKDEQILKRLVT-ICDLENLTYTDEGMEALLFSADGDLRRAVNNLQIV 209


>gi|125975224|ref|YP_001039134.1| endopeptidase La [Clostridium thermocellum ATCC 27405]
 gi|256003114|ref|ZP_05428106.1| Sigma 54 interacting domain protein [Clostridium thermocellum DSM
           2360]
 gi|281419198|ref|ZP_06250214.1| Sigma 54 interacting domain protein [Clostridium thermocellum JW20]
 gi|125715449|gb|ABN53941.1| Endopeptidase La [Clostridium thermocellum ATCC 27405]
 gi|255992805|gb|EEU02895.1| Sigma 54 interacting domain protein [Clostridium thermocellum DSM
           2360]
 gi|281407064|gb|EFB37326.1| Sigma 54 interacting domain protein [Clostridium thermocellum JW20]
          Length = 558

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 65/335 (19%), Positives = 107/335 (31%), Gaps = 74/335 (22%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +      RP +L+E  GQ +    L+     A        HV+  GPPG+GKT  A+V+ 
Sbjct: 56  EPLSEKTRPTSLKEIVGQSQGIKALR-----AALCGPNPQHVIIYGPPGVGKTAAARVIL 110

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDR----------------------------- 106
            E   +  S      AK  ++ A     ++R                             
Sbjct: 111 EEAKKSELSPFKKE-AKFVEVDATTLRFDERGIADPLIGSVHDPIYQGAGAYGVAGIPQP 169

Query: 107 ----------DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSR--- 153
                      +LF+DEI  L  I    L   +ED  + L   E     S   N+     
Sbjct: 170 KPGAVTKAHGGILFLDEIGELHPIQMNKLLKVLEDRVVYL---ESAYYSSEDKNIPPHIH 226

Query: 154 ----------FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAV 203
                     F L+ ATTR             + I        ++  I +  A+  G A+
Sbjct: 227 EIFQKGLPADFRLVGATTRTADEIPAAIRSRCVEIYFRPLTPSEIAEIAKNAAQKGGFAM 286

Query: 204 TDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQL 263
            +  A  +A  ++   R A  +++     A V   + I R+  +  +            +
Sbjct: 287 EEGCAELVAKYAQN-GREAVNIVQIAGGVAIVEGRRLIERKDIEWVIEFGHYSPR----I 341

Query: 264 DLRYLTMIARNFGGGPVG-IETISAGLSEPRDAIE 297
           D +          G  VG I  ++   +     IE
Sbjct: 342 DKKVT-------KGEQVGCINGLAVFGNSTGTVIE 369


>gi|307717502|gb|ADN88804.1| recombination factor protein [Listeria welshimeri]
          Length = 191

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/202 (22%), Positives = 80/202 (39%), Gaps = 17/202 (8%)

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           G+GKT++A  +A      FR+ +     K   ++ A    +    +L +DE+HRL    +
Sbjct: 1   GIGKTSIASAIAGSTKYAFRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQ 60

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           + L P +E   + +++G   S   + IN +    I + T++  L     +   I +    
Sbjct: 61  DFLLPLLESGAI-ILIGATTSNPYIAINPA----IRSRTQIFELKPLTVEDIMITMDRAL 115

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT-- 240
            + E       RG     + + + A    A  S G  R A   L      +E        
Sbjct: 116 LDKE-------RGLGNYQVEIDEFAKKHFATASNGDVRSALNALELAVISSEANEEGIIH 168

Query: 241 ITREIADAALLRL--AIDKMGF 260
           IT + A+  L +   A DK G 
Sbjct: 169 ITLDAAEECLQKKSLAHDKDGD 190


>gi|229582087|ref|YP_002840486.1| replication factor C large subunit [Sulfolobus islandicus
           Y.N.15.51]
 gi|259585461|sp|C3NHF4|RFCL_SULIN RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|228012803|gb|ACP48564.1| AAA ATPase central domain protein [Sulfolobus islandicus Y.N.15.51]
          Length = 405

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 81/217 (37%), Gaps = 32/217 (14%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPR+L++   Q  A   L+ +IE+          VL  GPPG+GKTTLA+ VA +  +  
Sbjct: 9   RPRSLKDVENQDGAKKELQEWIESWLNGKPNAKAVLLHGPPGVGKTTLAEAVAHDYNLEL 68

Query: 83  RSTSGPVIAKAGDLAALLTNLE--------DRDVLFIDEIHRLSIIVE----EILYPAME 130
              +     K  D+  +                ++ +DE+  +++  +    + +   +E
Sbjct: 69  LEMNASDSRKLQDIKGVAEKASVYGSIFGTRGKLILLDEVDGINVREDTGAIQGILELIE 128

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
             +  +++            L   T +    ++G                       L+ 
Sbjct: 129 KTKYPIIMTANDPWNPALRELRNKTKMVGLNKLGKY--------------------PLRR 168

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
           ++++  +   +   DEA   I   S G  R A  +L+
Sbjct: 169 LLKKICQAEKIICDDEALNYIIDTSEGDTRYAINMLQ 205


>gi|150019888|ref|YP_001312142.1| sporulation protease LonC [Clostridium beijerinckii NCIMB 8052]
 gi|149906353|gb|ABR37186.1| Sporulation protease LonC [Clostridium beijerinckii NCIMB 8052]
          Length = 631

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 59/278 (21%), Positives = 101/278 (36%), Gaps = 63/278 (22%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            + S+N+      +S LRP    +  GQ  A    +  I  +K  +    H++  GPPG+
Sbjct: 156 RITSKNI------MSFLRPTDFNQVVGQERAI---RSLI--SKLSSPYPQHIILYGPPGV 204

Query: 66  GKTTLAQVVARELG----------------------VNFRSTSGPVIAKA---------G 94
           GKTT A++   E+                        + R  + P++             
Sbjct: 205 GKTTAARLALDEVKKLSFTPFDDKSKFVEVDGTTLRWDPREITNPLLGSVHDPIYQGSKR 264

Query: 95  DLAAL---------LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL----------D 135
           DLA +         +T      +LFIDEI  L  +++  L   +ED ++          D
Sbjct: 265 DLAEVGIPEPKPGLVTQAHGG-ILFIDEIGELDSMLQNKLLKVLEDKRVEFSSSYYDPDD 323

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
             + +           + F LI ATT+     NP        +       +D+  IV+  
Sbjct: 324 ETIPKYIKYLFDNGAPADFVLIGATTKSPSEINPALRSRCTEVYFEPLSSKDVVFIVEDA 383

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
           AK   + + D  A +I+  +    R A  +L     +A
Sbjct: 384 AKKLKVNLEDGVAKKISNYT-FEGRKAVNILTDTYGYA 420


>gi|229175153|ref|ZP_04302669.1| ATP-dependent protease La [Bacillus cereus MM3]
 gi|228608289|gb|EEK65595.1| ATP-dependent protease La [Bacillus cereus MM3]
          Length = 556

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 55/289 (19%), Positives = 99/289 (34%), Gaps = 57/289 (19%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           R +S  +     +RP +  +  GQ +   +LK     A        HV+  GPPG+GKT 
Sbjct: 51  REISLTEPLAEKVRPTSFLDIVGQEDGIKSLK-----AALCGPNPQHVIIYGPPGIGKTA 105

Query: 70  LAQVVARELGVNFRSTS----------------------GPVIAKAGD------------ 95
            A++V  E   N +S                         P+I    D            
Sbjct: 106 AARLVLEEAKRNPKSPFRTNATFIELDATTARFDERGIADPLIGSVHDPIYQGAGAMGQA 165

Query: 96  -----LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL----MVGEGPSARS 146
                    +T+     +LFIDEI  L  I    +   +ED ++ L       E     +
Sbjct: 166 GIPQPKKGAVTDAHGG-ILFIDEIGELHPIQMNKMLKVLEDRKVFLESAYYSEENSMIPT 224

Query: 147 VKINL------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
              ++      + F L+ ATTR      P      + +     + E+++ + +  A    
Sbjct: 225 YIHDIFQKGLPADFRLVGATTRSPEEIPPAIRSRCLEVFFRELDTEEIQKVAKNAADKVE 284

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
           + + +     I M +R   R A  L++     A +   ++  ++     
Sbjct: 285 MQIGENGIEMIGMYARN-GREAINLVQISAGMA-INEERSFIKDEDIEW 331


>gi|119873156|ref|YP_931163.1| replication factor C small subunit [Pyrobaculum islandicum DSM
           4184]
 gi|150415671|sp|A1RV38|RFCS2_PYRIL RecName: Full=Replication factor C small subunit 2; Short=RFC small
           subunit 2; AltName: Full=Clamp loader small subunit 2
 gi|119674564|gb|ABL88820.1| replication factor C small subunit [Pyrobaculum islandicum DSM
           4184]
          Length = 320

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 57/252 (22%), Positives = 98/252 (38%), Gaps = 42/252 (16%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
            E       RPR+ +E     E  S L+ F+++       + H+LF GPPG GKTT+A V
Sbjct: 2   SELFWFEKYRPRSFDEVVDLEEVKSRLREFVKSG-----NMPHLLFYGPPGTGKTTMALV 56

Query: 74  VARE-----LGVNFRSTSGPVIAKAGDLAALLTNLED--------RDVLFIDEIHRLSII 120
           +ARE        N    +         +   +               ++ +DE   ++  
Sbjct: 57  LARELYGEYWRENTLELNASDERGINVIRERVKEFARTAPVGKAPFKLVILDEADNMTSD 116

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            ++ L   ME                +    +RF L+A    +  +  P+Q R  + IR 
Sbjct: 117 AQQALRRIME----------------IYAQNTRFILLA--NYISGIIEPIQSRV-VMIRF 157

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           N    E + + ++  A+  G+ ++D+A   I   ++G  R A   L+        A  K 
Sbjct: 158 NPLPKEAVISRLRYIAENEGVKISDDALETIYEFTQGDMRKAINALQIAA-----ATEKE 212

Query: 241 ITREIADAALLR 252
           IT ++   AL  
Sbjct: 213 ITEDVVARALGM 224


>gi|78780135|ref|YP_398247.1| DNA polymerase III, tau subunit [Prochlorococcus marinus str. MIT
           9312]
 gi|78713634|gb|ABB50811.1| DNA polymerase III, tau subunit [Prochlorococcus marinus str. MIT
           9312]
          Length = 579

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 51/226 (22%), Positives = 81/226 (35%), Gaps = 19/226 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP  L+E  GQ      LK  +   K         LF GP G GKT+ A++ A+ L    
Sbjct: 13  RPSNLDELVGQNFISITLKQALLTKKIS----PAYLFNGPRGTGKTSSARIFAKSLNCQA 68

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                       DL   +T+    D++ ID      +  +  I+E   +   +      +
Sbjct: 69  FEEPTIHPCGKCDLCRQITDGNALDIIEIDAASNTGVENIREIIERARFAPTQARWKVYV 128

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++   SR   I ATT    + N +Q R             D+
Sbjct: 129 IDECHMLSTAASNALLKTIEEPPSRVVFILATTNPERVLNTIQSRCQ-KFDFRRISPSDI 187

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
              +   A+   +    +A   IA RS G  R A  LL ++    E
Sbjct: 188 FQHLSEIAEKESIKYEVQALNIIAKRSNGGMRDAQSLLEQLNLLPE 233


>gi|323465897|gb|ADX69584.1| DNA polymerase III [Lactobacillus helveticus H10]
          Length = 595

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 83/224 (37%), Gaps = 21/224 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPRT +   GQ      LK  I     R +     LF GP G GKT+ A++ A+ L    
Sbjct: 11  RPRTFDSVIGQESITDTLKNAI----KRGKVSHAFLFAGPRGTGKTSCAKIFAKALNCTN 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P    A  +AA   ++   D++ ID      +  +  I +++ Y   E      +
Sbjct: 67  LQDGEPCNECANCIAADKGSMP--DIMEIDAASNNGVDEIREIRDKVKYAPTEGKYKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT +  +   +  R            +DL
Sbjct: 125 IDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRI-SKDDL 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           +  ++       +   D+A   IA  + G  R A  +L ++  +
Sbjct: 184 EKRMKYILDQENIKYEDKALAVIAQVADGGMRDALSILDQLLSY 227


>gi|313894455|ref|ZP_07828020.1| DNA polymerase III, subunit gamma and tau [Veillonella sp. oral
           taxon 158 str. F0412]
 gi|313441279|gb|EFR59706.1| DNA polymerase III, subunit gamma and tau [Veillonella sp. oral
           taxon 158 str. F0412]
          Length = 856

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 63/301 (20%), Positives = 109/301 (36%), Gaps = 41/301 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP+T  +  GQ +    L   I   K         LF GP G GKT++A++ AR
Sbjct: 5   ALYRKYRPQTFTDVVGQHQVSDTLMRAIREDKVAHAY----LFAGPRGTGKTSMAKIFAR 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR--DVLFID-----EIHRLSIIVEEILYPAM 129
            +        GP      + +A  + L  +  DVL ID      I  +  + E + +  +
Sbjct: 61  AINCEH----GPTDHPCNECSACKSILSGQSMDVLEIDAASNRGIDEVRALRESVKFMPV 116

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           E  +   ++ E             ++++   +    I ATT +  L   +  R       
Sbjct: 117 EGRKKVFIIDEAHMLTTEAWNALLKTIEEPPAHVMFIFATTEIEKLPVTIVSRCQRYTFR 176

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
                +D+   +   A+  G  +   AA  IA+ + G  R A  +L +    A       
Sbjct: 177 RI-TSDDIAQRLSYVAEKEGFGLDPAAAQLIAVHADGGLRDALSILDQCAGMATGTITPQ 235

Query: 241 ITREIADAALLRLAIDKMGFDQLD--LRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
           +  E+             G    +  + +L  +    G GP  +  I   L+E RDA + 
Sbjct: 236 VVEELI------------GLVSKEWIIHFLDALRN--GDGPKLLSYIHDALAEGRDATQI 281

Query: 299 L 299
           +
Sbjct: 282 M 282


>gi|299141517|ref|ZP_07034653.1| DNA polymerase III, gamma/tau subunit [Prevotella oris C735]
 gi|298576853|gb|EFI48723.1| DNA polymerase III, gamma/tau subunit [Prevotella oris C735]
          Length = 599

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/254 (17%), Positives = 86/254 (33%), Gaps = 24/254 (9%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T +   GQ    + LK  +++ K         LF GP G+GKTT A++ A+ +
Sbjct: 8   ARKYRPMTFDAVVGQHALTTTLKNAVKSGKLAHAY----LFCGPRGVGKTTCARIFAKAI 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI------IVEEILYPAMEDF 132
                   G          A        ++  +D     S+      + +  + P +  +
Sbjct: 64  NCEHPGEDGEACNACESCKA-FNEQRSYNIFELDAASNNSVENIKALMEQTRIPPQVGRY 122

Query: 133 QLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           ++ ++               ++++   +    I ATT    +   +  R  I        
Sbjct: 123 KVFIIDEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQIYDFERM-T 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           + +    ++  A    +   +EA   IA ++ G  R A  +  +   F +      IT +
Sbjct: 182 VGNTIEHLKLVAAKESITYDEEALAVIAEKADGGMRDALSIFDQAASFCQ----GNITYQ 237

Query: 245 IADAALLRLAIDKM 258
                L  L  D  
Sbjct: 238 KVIEDLNVLDSDNY 251


>gi|21282162|ref|NP_645250.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus
           subsp. aureus MW2]
 gi|49485342|ref|YP_042563.1| DNA polymerase III, tau subunit [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|300911028|ref|ZP_07128477.1| DNA polymerase III, gamma/tau subunit DnaX [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|21203598|dbj|BAB94298.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus
           subsp. aureus MW2]
 gi|49243785|emb|CAG42210.1| DNA polymerase III, tau subunit [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|300887207|gb|EFK82403.1| DNA polymerase III, gamma/tau subunit DnaX [Staphylococcus aureus
           subsp. aureus TCH70]
          Length = 565

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 52/262 (19%), Positives = 91/262 (34%), Gaps = 29/262 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RP++ E+  GQ      L+  I   K         +F GP G GKT++A+V A+
Sbjct: 5   ALYRMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAY----IFSGPRGTGKTSIAKVFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +     +   P       +   +T   + DV+ ID      +  +  I +++ Y   E 
Sbjct: 61  AINCLNSTDGEPCNEC--HICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSEL 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++   +    I ATT    +   +  R         
Sbjct: 119 KYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISR-AQRFDFKA 177

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
             +  +   ++  A    +   DEA   IA  S G  R A  ++    D A      T+T
Sbjct: 178 ISLNQIVERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIM----DQAIAFGDGTLT 233

Query: 243 REIADAALLRLA-IDKMGFDQL 263
                 AL     +     D L
Sbjct: 234 L---QDALNVTGSVHDEALDHL 252


>gi|116753783|ref|YP_842901.1| replication factor C large subunit [Methanosaeta thermophila PT]
 gi|121693813|sp|A0B6D7|RFCL_METTP RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|116665234|gb|ABK14261.1| replication factor C large subunit [Methanosaeta thermophila PT]
          Length = 467

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 49/262 (18%), Positives = 90/262 (34%), Gaps = 25/262 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           +     RP+ L+   G  +A S L+ +  A +     +  ++  GPPG+GKT+ A  +A 
Sbjct: 3   SWAEKYRPKNLDGILGNAKAVSELRAWAMAWEKGRPEVKCLILYGPPGVGKTSAALALAS 62

Query: 77  ELGVNFRSTSGPVIAKAGDLAALL-------TNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           E+  ++   +      A  + ++        T    R ++ +DE   L    +       
Sbjct: 63  EMDWDYIELNASDQRTAEIIKSIAGPASQVSTFSGRRRLVILDEADNLHGTYDRG----- 117

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
                    G     R +K       LIA       +  PL+D        +    + + 
Sbjct: 118 ---------GAAAILRVIKNATQPVILIA--NEYYNIEKPLRDACRGVQFRSI-RAQTIA 165

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR-RVRDFAEVAHAKTITREIADA 248
           ++++   +  G+    EA   IA  S G  R A   L    R    +      T E    
Sbjct: 166 SLLREICRSEGIECEPEAVMHIAAMSGGDLRSAINDLEAAARGLKHLRLEDVATSERDVK 225

Query: 249 ALLRLAIDKMGFDQLDLRYLTM 270
           A +   +D +   +     L  
Sbjct: 226 ASIFRVLDSIFKGEDSRSALEA 247


>gi|325287470|ref|YP_004263260.1| DNA polymerase III subunits gamma and tau [Cellulophaga lytica DSM
           7489]
 gi|324322924|gb|ADY30389.1| DNA polymerase III, subunits gamma and tau [Cellulophaga lytica DSM
           7489]
          Length = 599

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 55/265 (20%), Positives = 90/265 (33%), Gaps = 46/265 (17%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+T ++  GQ    + L   I+           +LF GP G+GKTT A+++A+ +
Sbjct: 8   ARKYRPQTFKDVVGQQAITNTLLNAIQ----NNHLAQALLFTGPRGVGKTTCARILAKMI 63

Query: 79  G------------VNFRSTSGPVIAKAGDLAALLT------NLEDRDVLFIDEIHRLSII 120
                         N              + +L+        +    V  IDE+H LS  
Sbjct: 64  NSDGEENPEEDFAFNIFELDAASNNSVDGIRSLIDQVRIPPQVGKYKVYIIDEVHMLSQA 123

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                   +E+                         I ATT    +   +  R  I    
Sbjct: 124 AFNAFLKTLEE------------------PPKHAIFILATTEKHKIIPTILSRCQIFDFK 165

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
               ++D    ++  A+  G+   D+A   IA ++ G  R A  +  RV  F+     K 
Sbjct: 166 RI-TVKDAAEYLKYIAENQGIEADDDALHIIAQKADGAMRDALSIFDRVVSFS----GKQ 220

Query: 241 ITREIADAALLRLAIDKMGFDQLDL 265
           +TR+     L  L  D   F+  D 
Sbjct: 221 LTRKAVTENLNVLDYDTY-FEATDH 244


>gi|52081304|ref|YP_080095.1| Lon-like ATP-dependent protease [Bacillus licheniformis ATCC 14580]
 gi|52786683|ref|YP_092512.1| hypothetical protein BLi02951 [Bacillus licheniformis ATCC 14580]
 gi|319647217|ref|ZP_08001439.1| LonB protein [Bacillus sp. BT1B_CT2]
 gi|52004515|gb|AAU24457.1| Lon-like ATP-dependent protease [Bacillus licheniformis ATCC 14580]
 gi|52349185|gb|AAU41819.1| LonB [Bacillus licheniformis ATCC 14580]
 gi|317390564|gb|EFV71369.1| LonB protein [Bacillus sp. BT1B_CT2]
          Length = 551

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 57/292 (19%), Positives = 95/292 (32%), Gaps = 56/292 (19%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M++   + R++   +     +RP   ++  GQ +    LK     A        HV+  G
Sbjct: 44  MEQLRKM-RSIHLSEPLSEKVRPTAFKDIVGQEDGIKALK-----AALCGPNPQHVIIYG 97

Query: 62  PPGLGKTTLAQVVARELGVNFRSTS----------------------GPVIAKAGD---- 95
           PPG+GKT  A++V  E   N RS                         P+I    D    
Sbjct: 98  PPGVGKTAAARLVLEEAKKNKRSPFQEHSAFVELDATTARFDERGIADPLIGSVHDPIYQ 157

Query: 96  -------------LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL----MV 138
                            +T+     VLFIDEI  L  I    +   +ED ++ L      
Sbjct: 158 GAGAMGQAGIPQPKQGAVTHAHGG-VLFIDEIGELHPIQMNKMLKVLEDRKVFLESAYYS 216

Query: 139 GEGPSARSVKINL------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            E         ++      + F LI ATTR+     P      + +     E  +LKT+ 
Sbjct: 217 EENTQIPKHIHDIFQNGLPADFRLIGATTRMPDEIPPAIRSRCLEVFFRDLEKHELKTVA 276

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           ++ A      V +E    +   +R    +   +             +    +
Sbjct: 277 KKAADKIQKKVAEEGLDLLTRYARNGREVVNMMQIAAGMALTEERDEVTVED 328


>gi|260062481|ref|YP_003195561.1| DNA polymerase III subunit gamma/tau [Robiginitalea biformata
           HTCC2501]
 gi|88784046|gb|EAR15216.1| DNA polymerase III subunit gamma/tau [Robiginitalea biformata
           HTCC2501]
          Length = 631

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 51/247 (20%), Positives = 81/247 (32%), Gaps = 41/247 (16%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+  E+  GQ      L   IE           +LF GP G+GKTT A+++A+++
Sbjct: 19  ARKYRPQQFEDVVGQQAITRTLLNAIENDHLAQA----LLFCGPRGVGKTTCARILAKKI 74

Query: 79  G------------VNFRSTSGPVIAKAGDLAALLT------NLEDRDVLFIDEIHRLSII 120
                         N             D+  L+        +    V  IDE+H LS  
Sbjct: 75  NEDGNQRDGEDFAFNIFELDAASNNSVDDIRNLIDQVRIPPQVGKYKVYIIDEVHMLSQA 134

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                   +E+                         I ATT    +   +  R  I    
Sbjct: 135 AFNAFLKTLEE------------------PPRHAIFILATTEKHKIIPTILSRCQI-FDF 175

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
               + D  + ++  A+  G+   +EA   IA ++ G  R A  +  RV  FA     + 
Sbjct: 176 RRITVGDAASYLKYIAEQQGIEADEEALHMIAQKADGAMRDALSIFDRVVSFAGNKLTRK 235

Query: 241 ITREIAD 247
              E  +
Sbjct: 236 AVAENLN 242


>gi|206895302|ref|YP_002246820.1| DNA polymerase III, gamma and tau subunit [Coprothermobacter
           proteolyticus DSM 5265]
 gi|206737919|gb|ACI16997.1| DNA polymerase III, gamma and tau subunit [Coprothermobacter
           proteolyticus DSM 5265]
          Length = 522

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 52/234 (22%), Positives = 83/234 (35%), Gaps = 21/234 (8%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP+T EE  GQ      L   ++  K         LF GP G GKT+ A++ A+
Sbjct: 2   ALYRKYRPQTFEEVVGQSHVTEILTKALDNQKISHAY----LFAGPKGSGKTSCARIFAK 57

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            L      TS P      +   L+      DV+ ID      +  +  + E + Y   + 
Sbjct: 58  GLNCETGITSKPCNEC--ESCKLINEGHSLDVIEIDAASNRGVDEIRELRERVKYRPAQS 115

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT    +   +  R     R   
Sbjct: 116 RYKVYIIDEAHMLTREAFNALLKTLEEPPEYVVFILATTDPQKIPPTVLSRCQ-RFRFKK 174

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
              +++  I++   K  G +   EA   IA  S G  R A  LL ++    E  
Sbjct: 175 LTSDEVFQILENVCKSEGFSYQREALELIAEVSDGAVRDALNLLEQISVVDEGK 228


>gi|323474695|gb|ADX85301.1| AAA ATPase central domain protein [Sulfolobus islandicus REY15A]
 gi|323477429|gb|ADX82667.1| AAA ATPase central domain protein [Sulfolobus islandicus HVE10/4]
          Length = 405

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 82/217 (37%), Gaps = 32/217 (14%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPR+L++   Q  A   L+ +IE+          VL  GPPG+GKTTLA+ +A +  +  
Sbjct: 9   RPRSLKDVENQDGAKKELQEWIESWLNGKPNAKAVLLHGPPGVGKTTLAEALAHDYNLEL 68

Query: 83  RSTSGPVIAKAGDLAALLTNLE--------DRDVLFIDEIHRLSIIVE----EILYPAME 130
              +     K  D+ ++                ++ +DE+  +++  +    + +   +E
Sbjct: 69  LEMNASDSRKLQDIKSVAEKASVYGSIFGTRGKLILLDEVDGINVREDTGAIQGILELIE 128

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
             +  +++            L   T +    ++G                       L+ 
Sbjct: 129 KTKYPIIMTANDPWNPALRELRNKTKMVGLNKLGKY--------------------PLRR 168

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
           ++++  +   +   DEA   I   S G  R A  +L+
Sbjct: 169 LLKKICQAEKIICDDEALNYIIDTSEGDARYAINMLQ 205


>gi|191639203|ref|YP_001988369.1| DNA-directed DNA polymerase III, gamma/tau subunit [Lactobacillus
           casei BL23]
 gi|190713505|emb|CAQ67511.1| DNA-directed DNA polymerase III, gamma/tau subunit [Lactobacillus
           casei BL23]
 gi|327383281|gb|AEA54757.1| DNA polymerase III subunit gamma/tau [Lactobacillus casei LC2W]
 gi|327386464|gb|AEA57938.1| DNA polymerase III subunit gamma/tau [Lactobacillus casei BD-II]
          Length = 565

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 60/295 (20%), Positives = 104/295 (35%), Gaps = 32/295 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  ++  GQ      LK     A    +     LF GP G GKT++A+++A+ L    
Sbjct: 11  RPQQFKDVIGQEAITKTLK----NALITGQTSHAYLFTGPRGTGKTSVAKILAKALNCLH 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P      ++   + N    DV+ ID      +  +  I ++  Y   +      +
Sbjct: 67  LEDGEPDNTC--EICQAINNGSLTDVIEIDAASNNGVDEIRDIRDKAKYAPTQARVKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++   +    I ATT    +   +  R            ED+
Sbjct: 125 IDEVHMLSSGAFNALLKTLEEPPAHVVFILATTEPHKIPATIISRTQ-RFDFRRITPEDI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              ++       +   D A   IA  + G  R A  +L +V  F        +T E A  
Sbjct: 184 VKRMRFILDDKQITYDDAALKVIAKAAEGGMRDALSILDQVLSF----GDNHVTTEDALD 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTM-IARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
               +    +G      +YL   +A++       IE + A   +    IEDLIE 
Sbjct: 240 VTGGVTTAVLG------KYLAAVLAKDHAQALKMIEDLLASGKDAGRLIEDLIEY 288


>gi|116495715|ref|YP_807449.1| DNA polymerase III, gamma/tau subunit [Lactobacillus casei ATCC
           334]
 gi|116105865|gb|ABJ71007.1| DNA polymerase III, gamma/tau subunit [Lactobacillus casei ATCC
           334]
          Length = 565

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 60/295 (20%), Positives = 104/295 (35%), Gaps = 32/295 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  ++  GQ      LK     A    +     LF GP G GKT++A+++A+ L    
Sbjct: 11  RPQQFKDVIGQEAITKTLK----NALITGQTSHAYLFTGPRGTGKTSVAKILAKALNCLH 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P      ++   + N    DV+ ID      +  +  I ++  Y   +      +
Sbjct: 67  LEDGEPDNTC--EICQAINNGSLTDVIEIDAASNNGVDEIRDIRDKAKYAPTQARVKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++   +    I ATT    +   +  R            ED+
Sbjct: 125 IDEVHMLSSGAFNALLKTLEEPPAHVVFILATTEPHKIPATIISRTQ-RFDFRRITPEDI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              ++       +   D A   IA  + G  R A  +L +V  F        +T E A  
Sbjct: 184 VKRMRFILDDKQITYDDAALKVIAKAAEGGMRDALSILDQVLSF----GDNHVTTEDALD 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTM-IARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
               +    +G      +YL   +A++       IE + A   +    IEDLIE 
Sbjct: 240 VTGGVTTAVLG------KYLAAVLAKDHAQALKMIEDLLASGKDAGRLIEDLIEY 288


>gi|254818503|ref|ZP_05223504.1| DNA polymerase III subunits gamma and tau [Mycobacterium
           intracellulare ATCC 13950]
          Length = 615

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 51/251 (20%), Positives = 85/251 (33%), Gaps = 21/251 (8%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T  E  GQ      L + +EA +         LF GP G GKT+ A+++AR
Sbjct: 2   ALYRKYRPATFAEVVGQEHVTEPLSIALEAGRINHAY----LFSGPRGCGKTSSARILAR 57

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-DVLFIDEIHRLSIIVEEILY------PAM 129
            L    +  +           AL  N     DV+ +D      +     L       PA 
Sbjct: 58  SLNC-AQGPTATPCGVCDSCQALAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQ 116

Query: 130 EDFQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
             +++ ++         G     + V+        I ATT    +   ++ R        
Sbjct: 117 SRYRVFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSR-THHYPFR 175

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
               + ++ ++ R  +  G+ V D     +     G+PR    +L ++   AE AH    
Sbjct: 176 LLPPKTMRALIGRICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLVAGAEGAHVTYQ 235

Query: 242 TREIADAALLR 252
                  A   
Sbjct: 236 RALGLLGATDM 246


>gi|172056062|ref|YP_001812522.1| DNA polymerase III, subunits gamma and tau [Exiguobacterium
           sibiricum 255-15]
 gi|171988583|gb|ACB59505.1| DNA polymerase III, subunits gamma and tau [Exiguobacterium
           sibiricum 255-15]
          Length = 561

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 85/233 (36%), Gaps = 25/233 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RP+  +E  GQ          I+ A          LF GP G GKT+LA+++A+
Sbjct: 5   ALYRVYRPQRFDEVVGQAHIT----RTIQNALMEERMSHAYLFSGPRGTGKTSLAKIIAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDL--AALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAM 129
            +         PV     +      +T     DV  ID      +  +  I +++ YP  
Sbjct: 61  AINCE----QAPVNEPCNECPTCRAITEGSSPDVFEIDAASNNGVDEIREIRDKVKYPPS 116

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           E      ++ E             ++++   +    I ATT    +   +  R      +
Sbjct: 117 EAAYKVYIIDEVHMLSTGAFNALLKTLEEPPAHAIFILATTEPHKIPATIISRCQ-RFDV 175

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
             +E++ L   +Q       +  T+ A   IA  + G  R A  LL +   F+
Sbjct: 176 KRHEVDQLMERMQYILSDQTIGYTETALRLIARAADGGMRDALSLLDQAVAFS 228


>gi|255658787|ref|ZP_05404196.1| ATP-dependent protease, Lon family [Mitsuokella multacida DSM
           20544]
 gi|260849185|gb|EEX69192.1| ATP-dependent protease, Lon family [Mitsuokella multacida DSM
           20544]
          Length = 651

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 64/273 (23%), Positives = 93/273 (34%), Gaps = 57/273 (20%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           + LLRPR   E  GQ  A  +L      AK  +    H+L  GPPG+GKTT A++V    
Sbjct: 181 MELLRPRDFSEIVGQERAVKSL-----LAKLSSPYPQHLLLYGPPGVGKTTAARLVLEAA 235

Query: 79  ----------------------GVNFRSTSGPVIAKAGD---------LA---------A 98
                                   + R  + P++    D         LA          
Sbjct: 236 RKKPASPFREDAPFVETDGTTLRWDPRDITNPLLGSVHDPIYQGAQKTLADSGIPEPKPG 295

Query: 99  LLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED----FQLDLMVGEGPSARSVKINL--- 151
           L+T      +LFIDEI  +  +++  L   +ED    F+        P        L   
Sbjct: 296 LVTEAHGG-ILFIDEIGEMDEMLQNKLLKVLEDKRAYFESAYYDPTDPKVPPYIRKLFEE 354

Query: 152 ---SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAA 208
              + F LI ATTR     NP        I       + ++ IVQ  A    +A+    A
Sbjct: 355 GAPADFVLIGATTRDAGHINPALRSRCAEIYFEPLTPKHIEAIVQNAAAKLKVALEPGVA 414

Query: 209 CEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
             I+  +    R A  +L      A       +
Sbjct: 415 ALISEYT-VEGRKAINILADAYSLALEKADGRM 446


>gi|328462873|gb|EGF34722.1| DNA polymerase III subunits gamma and tau [Lactobacillus helveticus
           MTCC 5463]
          Length = 595

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 83/224 (37%), Gaps = 21/224 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPRT +   GQ      LK  I     R +     LF GP G GKT+ A++ A+ L    
Sbjct: 11  RPRTFDSVIGQESITDTLKNAI----KRGKVSHAFLFAGPRGTGKTSCAKIFAKALNCTN 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P    A  +AA   ++   D++ ID      +  +  I +++ Y   E      +
Sbjct: 67  LQDGEPCNECANCIAADKGSMP--DIMEIDAASNNGVDEIREIRDKVKYAPTEGKYKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT +  +   +  R            +DL
Sbjct: 125 IDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRI-SKDDL 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           +  ++       +   D+A   IA  + G  R A  +L ++  +
Sbjct: 184 EKRMKYILDQENIKYEDKALAVIAQVADGGMRDALSILDQLLSY 227


>gi|312889163|ref|ZP_07748720.1| DNA polymerase III, subunits gamma and tau [Mucilaginibacter
           paludis DSM 18603]
 gi|311298325|gb|EFQ75437.1| DNA polymerase III, subunits gamma and tau [Mucilaginibacter
           paludis DSM 18603]
          Length = 600

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 45/246 (18%), Positives = 79/246 (32%), Gaps = 54/246 (21%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T +   GQ    + LK  I+  +         LF GP G+GKTT A+++A+ +
Sbjct: 8   ARKYRPVTFDTVVGQQHITNTLKNAIKNNQLAQA----FLFCGPRGVGKTTCARILAKTI 63

Query: 79  GV-------------------------NFRSTSGPVIAKAGDLAALLT------NLEDRD 107
                                      N             D+ +L+             
Sbjct: 64  NCTNLQAGIEACGECDSCKAFQRGNSFNVHELDAASNNSVEDIRSLIEQVRIPPQAGKYK 123

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           +  IDE+H LS          +E+                    S    I ATT    + 
Sbjct: 124 IYIIDEVHMLSQAAFNAFLKTLEE------------------PPSYAIFILATTEKHKIL 165

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             +  R  I    N  +++D+   +   A+   +    +    IA ++ G  R A  +  
Sbjct: 166 PTILSRCQI-FDFNRIKVDDMAGHLASIAQKESIGYEVDGLHIIAQKADGGLRDALSMFD 224

Query: 228 RVRDFA 233
           ++ +F+
Sbjct: 225 QIVNFS 230


>gi|91214676|ref|ZP_01251649.1| DNA polymerase III subunit gamma/tau [Psychroflexus torquis ATCC
           700755]
 gi|91187103|gb|EAS73473.1| DNA polymerase III subunit gamma/tau [Psychroflexus torquis ATCC
           700755]
          Length = 614

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 54/256 (21%), Positives = 84/256 (32%), Gaps = 45/256 (17%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T E+  GQ    + L   I            +LF GP G+GKT+ A+++A+++
Sbjct: 8   ARKYRPETFEDVVGQKAITNTLLNAINNDHLAQA----LLFTGPRGVGKTSCARILAKKI 63

Query: 79  G------------VNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSII 120
                         N             D+  L   +          V  IDE+H LS  
Sbjct: 64  NQEATDNENTDFAFNIFELDAASNNSVDDIRNLTDQVRIPPQTGKYKVYIIDEVHMLSQQ 123

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                   +E+                         I ATT    +   +  R  I    
Sbjct: 124 AFNAFLKTLEE------------------PPKHAIFILATTEKHKIIPTILSRCQIFDFK 165

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
               + D+K  + + A+  G+   ++A   IA ++ G  R A     RV  F+     K 
Sbjct: 166 RI-TVGDIKEHLAKIAEKEGVIADEDALHIIAQKADGAMRDALSTYDRVVSFS----GKN 220

Query: 241 ITREIADAALLRLAID 256
           +T E     L  L  D
Sbjct: 221 LTTEAVTENLNVLDYD 236


>gi|161506948|ref|YP_001576902.1| DNA polymerase III, gamma/tau subunit [Lactobacillus helveticus DPC
           4571]
 gi|160347937|gb|ABX26611.1| DNA polymerase III, gamma/tau subunit [Lactobacillus helveticus DPC
           4571]
          Length = 595

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 83/224 (37%), Gaps = 21/224 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPRT +   GQ      LK  I     R +     LF GP G GKT+ A++ A+ L    
Sbjct: 11  RPRTFDSVIGQESITDTLKNAI----KRGKVSHAFLFAGPRGTGKTSCAKIFAKALNCTN 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P    A  +AA   ++   D++ ID      +  +  I +++ Y   E      +
Sbjct: 67  LQDGEPCNECANCIAADKGSMP--DIMEIDAASNNGVDEIREIRDKVKYAPTEGKYKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT +  +   +  R            +DL
Sbjct: 125 IDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRI-SKDDL 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           +  ++       +   D+A   IA  + G  R A  +L ++  +
Sbjct: 184 EKRMKYILDQENIKYEDKALAVIAQVADGGMRDALSILDQLLSY 227


>gi|307717524|gb|ADN88815.1| recombination factor protein [Listeria innocua]
 gi|307717550|gb|ADN88828.1| recombination factor protein [Listeria innocua]
          Length = 191

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/202 (22%), Positives = 82/202 (40%), Gaps = 17/202 (8%)

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           G+GKT++A  +A      FR+ +     K   ++ A    +    +L +DE+HRL    +
Sbjct: 1   GIGKTSIASAIAGSTKYAFRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQ 60

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           + L P +E   + +++G   S   + IN +    I + T++  L     +   I +    
Sbjct: 61  DFLLPLLESGAI-ILIGATTSNPYIAINPA----IRSRTQIFELKPLTVEDIMITMDRAL 115

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT-- 240
           ++ E       RG     + + + A    A  S G  R A   L      +E        
Sbjct: 116 HDKE-------RGLGNYEVEIDEFAKKHFATASNGDVRSALNALELAVISSEPNEDGVIH 168

Query: 241 ITREIADAALLRL--AIDKMGF 260
           IT ++A+  L +   A DK G 
Sbjct: 169 ITLDVAEECLQKKSLAHDKDGD 190


>gi|255513870|gb|EET90135.1| Replication factor C [Candidatus Micrarchaeum acidiphilum ARMAN-2]
          Length = 316

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 49/272 (18%), Positives = 87/272 (31%), Gaps = 41/272 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                 RP++L+E  GQ +    LK F++          +++F G  G+GKTT A  +A+
Sbjct: 2   PWTEKYRPKSLDEVIGQKQIVERLKAFVKQG-----NFPNMIFAGSAGVGKTTSAIAMAK 56

Query: 77  -----ELGVNFRSTSGPVIAKAGDLAALLTNLEDR--------DVLFIDEIHRLSIIVEE 123
                +L   F+  +         +   + N             ++F+DE   L+   + 
Sbjct: 57  DLYDDDLNTAFKELNASDARGIDVIRGEVKNFAKTISIARVPVKIIFLDEADALTADAQH 116

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
            L   ME F                   +    I +      +  P+Q R  +  R    
Sbjct: 117 ALRRTMEKFS------------------AETRFILSANYASKIIEPIQSRC-VVFRFKPL 157

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK---- 239
             +D+K  V R  K  G+ +   A   +     G  R    +L+     +E         
Sbjct: 158 TEDDMKEYVNRIVKGEGITLEKNAMEALIYVGDGDLRKLTNVLQSAAMKSEKITEGDIYD 217

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMI 271
             +R      +  L     G        L  +
Sbjct: 218 VASRARPKEIMSMLRYAVDGDFDKARNELDTL 249


>gi|307717508|gb|ADN88807.1| recombination factor protein [Listeria innocua]
 gi|307717520|gb|ADN88813.1| recombination factor protein [Listeria innocua]
          Length = 191

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/202 (22%), Positives = 82/202 (40%), Gaps = 17/202 (8%)

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           G+GKT++A  +A      FR+ +     K   ++ A    +    +L +DE+HRL    +
Sbjct: 1   GIGKTSIASAIAGSTKYAFRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQ 60

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           + L P +E   + +++G   S   + IN +    I + T++  L     +   I +    
Sbjct: 61  DFLLPLLESGAI-ILIGATTSNPYIAINPA----IRSRTQIFELKPLTVEDIMITMDRAL 115

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT-- 240
           ++ E       RG     + + + A    A  S G  R A   L      +E        
Sbjct: 116 HDKE-------RGLGNYEVEIDEFAKKHFATASNGDVRSALNALELAVISSEPNENGVIH 168

Query: 241 ITREIADAALLRL--AIDKMGF 260
           IT ++A+  L +   A DK G 
Sbjct: 169 ITLDVAEECLQKKSLAHDKDGD 190


>gi|304382042|ref|ZP_07364594.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella marshii DSM
           16973]
 gi|304336796|gb|EFM03020.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella marshii DSM
           16973]
          Length = 592

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 47/254 (18%), Positives = 91/254 (35%), Gaps = 24/254 (9%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP + +   GQ    + L+  +++ K         LF GP G+GKTT A++ AR +
Sbjct: 8   ARKYRPMSFDSVVGQQALTTTLRNAVKSGKLAHAY----LFCGPRGVGKTTCARIFARAI 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI------IVEEILYPAMEDF 132
                +T G          A        ++  +D     S+      + +  + P +  +
Sbjct: 64  NCMNPTTEGEACGTCESCKA-FNEQRSYNIFELDAASNNSVENIKALMDQTRIPPQVGKY 122

Query: 133 QLDLMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           ++ ++               ++++   +    I ATT    +   +  R  I        
Sbjct: 123 KVFIIDEVHMLSTQAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQIYDFERM-T 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           + D    ++R A+  G+   +EA   IA ++ G  R A  +  +   F +      IT +
Sbjct: 182 VADTIAHLKRVAEQEGIGYEEEALAVIAEKADGGMRDALSIFDQSASFCQ----GQITYK 237

Query: 245 IADAALLRLAIDKM 258
                L  L  D  
Sbjct: 238 KVIEDLNVLDSDNY 251


>gi|289551726|ref|YP_003472630.1| DNA polymerase III subunits gamma and tau [Staphylococcus
           lugdunensis HKU09-01]
 gi|315660106|ref|ZP_07912964.1| DNA polymerase III, gamma/tau subunit DnaX [Staphylococcus
           lugdunensis M23590]
 gi|289181257|gb|ADC88502.1| DNA polymerase III subunits gamma and tau [Staphylococcus
           lugdunensis HKU09-01]
 gi|315495007|gb|EFU83344.1| DNA polymerase III, gamma/tau subunit DnaX [Staphylococcus
           lugdunensis M23590]
          Length = 576

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 53/263 (20%), Positives = 95/263 (36%), Gaps = 25/263 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RP++  +  GQ      LK  I   K         +F GP G GKT++A+V A+
Sbjct: 5   ALYRMFRPQSFSDVVGQEHVTQTLKNAISKGKQSHAY----IFSGPRGTGKTSIAKVFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +     +   P    A  +   +T   + DV+ ID      +  +  I +++ Y   E 
Sbjct: 61  AINCLNSNDGEPCNECA--ICKGITTGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSES 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++   +    I ATT    +   +  R         
Sbjct: 119 KFKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISR-AQRFDFKA 177

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE----VAHA 238
              E +   ++  A    +     A   IA  S G  R A  ++ +   F +    +  A
Sbjct: 178 INSEQIVERLRFVADEQQIDYDIAALEFIAKASEGGMRDALSIMDQAIAFGDDHLTLKDA 237

Query: 239 KTITREIADAALLRLAIDKMGFD 261
             +T  + +AAL  L  D +  D
Sbjct: 238 LDVTGSVDEAALNDLFKDIVNGD 260


>gi|258404639|ref|YP_003197381.1| DNA polymerase III, subunits gamma and tau [Desulfohalobium
           retbaense DSM 5692]
 gi|257796866|gb|ACV67803.1| DNA polymerase III, subunits gamma and tau [Desulfohalobium
           retbaense DSM 5692]
          Length = 538

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/243 (20%), Positives = 89/243 (36%), Gaps = 25/243 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T     GQ +  + L      A A  +     LF G  G+GKTT+A+++A+ +    
Sbjct: 11  RPQTFSTVVGQKQVRTILSR----AAAENQVAPAYLFSGTRGVGKTTVARILAKAINCE- 65

Query: 83  RSTSGPVIAKAGDLA--ALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLD 135
               GP             +T     DV+ ID      +  +  + E++ Y  +      
Sbjct: 66  ---QGPASEPCNQCRHCREITQGTGVDVVEIDGASHTGVDHVRKLKEDVGYAPLSCRYKV 122

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           +++ E             ++++    +   I ATT        +  R    I       E
Sbjct: 123 IIIDEAHMLSKAAFNALLKTLEEPPPQAIFIMATTEPHRFPATIISRCQHHIFQRL-RQE 181

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +L   ++R  +   + +  EA   IA +  G+ R A  LL +V    +        RE+ 
Sbjct: 182 ELTDHLRRVLENEAIEMDAEAVRLIARKGAGSVRDAMSLLAQVLALGQRRLESAHVREVL 241

Query: 247 DAA 249
             A
Sbjct: 242 GLA 244


>gi|300087580|ref|YP_003758102.1| DNA polymerase III gamma and tau subunits [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527313|gb|ADJ25781.1| DNA polymerase III, subunits gamma and tau [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 556

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 82/228 (35%), Gaps = 20/228 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+ L E  GQ      L   ++  +         LF GP G GKT+  +++A+ +    
Sbjct: 11  RPQRLAEVVGQKPITDTLLSALQQNRVAQAY----LFCGPRGTGKTSTGRILAKAVNCLN 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL-----YPAMEDFQLDLM 137
              SG    +     A+ TN    D++ ID     S+    +L     Y   E      +
Sbjct: 67  NEGSGEPCNECSMCRAI-TNGSAMDIIEIDAASNNSVDDIRVLNDRVNYSPAEARYKVYI 125

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++    R   I ATT +  +   +  R            +D+
Sbjct: 126 IDEFHMLSTSASNALLKTLEEPPPRVIFILATTELHKILPTIMSRCQ-RFDFRRLTTDDI 184

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
              +   A   G+ +  +    +A  + G+ R A  LL++    ++  
Sbjct: 185 TDKLAEIATSEGVDIERDGLVLLARAAGGSLRDAENLLQQTATASQGK 232


>gi|238619813|ref|YP_002914639.1| replication factor C large subunit [Sulfolobus islandicus M.16.4]
 gi|259585253|sp|C4KHA7|RFCL_SULIK RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|238380883|gb|ACR41971.1| AAA ATPase central domain protein [Sulfolobus islandicus M.16.4]
          Length = 405

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 82/217 (37%), Gaps = 32/217 (14%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPR+L++   Q  A   L+ +IE+          VL  GPPG+GKTTLA+ +A +  +  
Sbjct: 9   RPRSLKDVENQDGAKKELQEWIESWLNGKPNAKAVLLHGPPGVGKTTLAEALAHDYNLEL 68

Query: 83  RSTSGPVIAKAGDLAALLTNLE--------DRDVLFIDEIHRLSIIVE----EILYPAME 130
              +     K  D+ ++                ++ +DE+  +++  +    + +   +E
Sbjct: 69  LEMNASDSRKLQDIKSVAEKASVYGSIFGTRGKLILLDEVDGINVREDTGAIQGILELIE 128

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
             +  +++            L   T +    ++G                       L+ 
Sbjct: 129 KTKYPIIMTANDPWNPALRELRNKTKMVGLNKLGKY--------------------PLRR 168

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
           ++++  +   +   DEA   I   S G  R A  +L+
Sbjct: 169 LLKKICQAEKIICDDEALNYIIDTSEGDARYAINMLQ 205


>gi|313159185|gb|EFR58558.1| DNA polymerase III, subunit gamma and tau [Alistipes sp. HGB5]
          Length = 749

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 51/245 (20%), Positives = 79/245 (32%), Gaps = 53/245 (21%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T     GQ    S LK  IE A+         LF GP G+GKTT A++ A+ +
Sbjct: 8   ARKYRPATFASVVGQKHITSTLKNAIERAQLAHAY----LFCGPRGVGKTTCARIFAKAI 63

Query: 79  GV------------------------NFRSTSGPVIAKAGDLA------ALLTNLEDRDV 108
                                     N             D+        ++  +    V
Sbjct: 64  NCLSPNGAEACNECESCRSFNEGRSLNIHELDAASNNSVEDIRTLIEQVRIIPQVGRYSV 123

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
             IDE+H LS          +E+          P A ++ I         ATT    +  
Sbjct: 124 FIIDEVHMLSAAAFNAFLKTLEE----------PPAHAIFIL--------ATTEKHKIIP 165

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            +  R  I    N   +ED    ++  A    ++  +E+   IA ++ G  R A  +  +
Sbjct: 166 TILSRCQI-YDFNRIRVEDSVEYLKYIAGQENISADEESLNLIAQKADGGMRDALSMFDK 224

Query: 229 VRDFA 233
              F 
Sbjct: 225 AVSFC 229


>gi|25026765|ref|NP_736819.1| DNA polymerase III subunits gamma and tau [Corynebacterium
           efficiens YS-314]
 gi|23492044|dbj|BAC17019.1| putative DNA polymerase III gamma subunit [Corynebacterium
           efficiens YS-314]
          Length = 780

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 85/233 (36%), Gaps = 23/233 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP + +E  GQ    + L V +++ +         LF GP G GKT+ A+++AR
Sbjct: 2   ALYRKYRPASFDEVVGQEHVTAPLSVALDSGRINHAY----LFSGPRGCGKTSSARILAR 57

Query: 77  ELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAM 129
            L      TS P  V      LA       + DV  +D      +  +  + E+  Y   
Sbjct: 58  SLNCVQGPTSTPCGVCNSCVSLAP--GGPGNLDVTELDAASHNGVDDMRELREKAHYAPA 115

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           E      ++ E             + V+        I ATT    +   ++ R       
Sbjct: 116 ESRYRVFIIDEAHMITPQGFNAMLKIVEEPPEHLIFIFATTEPDKVIGTIRSR-THHYPF 174

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                  ++ +++R  +  G+ V D     +     G+PR +  +L ++   A
Sbjct: 175 RLLTPGAMRGLLERTCRAEGVHVDDAVYPLVIRAGGGSPRDSLSILDQLLAGA 227


>gi|317055948|ref|YP_004104415.1| DNA polymerase III subunits gamma and tau [Ruminococcus albus 7]
 gi|315448217|gb|ADU21781.1| DNA polymerase III, subunits gamma and tau [Ruminococcus albus 7]
          Length = 532

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 51/256 (19%), Positives = 87/256 (33%), Gaps = 21/256 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T ++   Q    + LK  I   K         LF G  G GKTT A++ A+ +    
Sbjct: 10  RPKTFDDVVSQPHITTTLKNQIIGGKTAHAY----LFTGSRGTGKTTCARIFAKAVNCEH 65

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII-----VEEILYPAMEDFQLDLM 137
                P      ++     N    D++ ID     S+       E +++          +
Sbjct: 66  GKDGMPCCEC--EICKAADNGSLGDIIEIDAASNASVNDIRELREGVMFTPEMCKYKVYI 123

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT +  +   +  R       N  + ED+
Sbjct: 124 IDEVHMLSVGAFNALLKTMEEPPPHVKFILATTEIQKVPATIVSRCQ-HFDFNRIKTEDI 182

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              +   A   G  + ++AA  IA  S G  R A  LL +   F++     T++     A
Sbjct: 183 VARLTYIAGQEGFTLHEDAAELIARLSDGGMRDALSLLDQCVAFSDDITIDTVSNASGIA 242

Query: 249 ALLRLAIDKMGFDQLD 264
               L          D
Sbjct: 243 GRDYLFDILESIADKD 258


>gi|15639989|ref|NP_219442.1| DNA polymerase III subunits gamma and tau [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189026228|ref|YP_001934000.1| DNA polymerase III subunits gamma and tau [Treponema pallidum
           subsp. pallidum SS14]
 gi|3323329|gb|AAC65953.1| DNA polymerase III, subunits gamma and tau (dnaH) [Treponema
           pallidum subsp. pallidum str. Nichols]
 gi|189018803|gb|ACD71421.1| DNA polymerase III, subunits gamma and tau [Treponema pallidum
           subsp. pallidum SS14]
 gi|291060362|gb|ADD73097.1| DNA polymerase III subunits gamma and tau [Treponema pallidum
           subsp. pallidum str. Chicago]
          Length = 572

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 57/255 (22%), Positives = 94/255 (36%), Gaps = 25/255 (9%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
            +  RP+  +   GQ    + L+  +E  K         LF GP G GKT+ A+++A+ L
Sbjct: 7   ATRYRPQRFQHVLGQKFVVATLQKSLEENKVS----PAYLFSGPHGCGKTSCARILAKAL 62

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL-----SIIVEEILYPAMEDFQ 133
               R  S P   +      + T   + +V+ ID            I EEIL+P      
Sbjct: 63  NCVQREASEP-CGECPSCREIATGT-NLNVIEIDGASHTGVGDVRQIKEEILFPPHGTRY 120

Query: 134 LDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
              ++ E             ++++        I ATT V  +   ++ R          +
Sbjct: 121 KVFIIDEVHMLSNSAFNALLKTIEEPPPYVVFIFATTEVHRIPATVKSRCQ-QFHFRLVD 179

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            + L   + + A+   +AV D     IA  S G+ R A  L     D   V+ A  +T E
Sbjct: 180 TQTLVCALAQAAQQMQIAVEDGVLSWIARESAGSMRDAYTLF----DQTVVSCAGPVTLE 235

Query: 245 IADAALLRLAIDKMG 259
                L  +  D + 
Sbjct: 236 NIQKKLGLMTDDSLA 250


>gi|325968176|ref|YP_004244368.1| ATPase AAA [Vulcanisaeta moutnovskia 768-28]
 gi|323707379|gb|ADY00866.1| AAA ATPase central domain protein [Vulcanisaeta moutnovskia 768-28]
          Length = 435

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 55/258 (21%), Positives = 91/258 (35%), Gaps = 39/258 (15%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +S++   I   RPR L E   Q EA   L  +I + +    +   V+ VG PG GKTTLA
Sbjct: 1   MSRKIPWIEKYRPRKLSEVVNQEEAKKALLDWINSWEKGKPSRKAVMLVGSPGTGKTTLA 60

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------EDRDVLFIDEIHRLSIIVEE 123
             +A E G      +   +     +  ++               ++  DE+  L++  + 
Sbjct: 61  YALANEKGYEVLELNASDVRTGERIRQIIGGSMKMGSLFGFRGRIILFDEVDGLNVREDR 120

Query: 124 ILYPAM-----EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
               A+     E     +M    P          +F  +     V  L  PL++      
Sbjct: 121 GGLAAIVELIRESTWPIIMTANNPWD-------PKFRELRDEAEVIQL-KPLREN----- 167

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
                   D+ TI++R     G+   ++A   IA  S G  R A   L+     A     
Sbjct: 168 --------DILTILRRICNNEGIKCEEDALKLIAEASGGDVRAAINDLQ-----AAAEGK 214

Query: 239 KTITREIADAALLRLAID 256
           K +T++           D
Sbjct: 215 KVLTKDDVTVTERAHQFD 232


>gi|168187300|ref|ZP_02621935.1| ATP-dependent protease, Lon family [Clostridium botulinum C str.
           Eklund]
 gi|169294755|gb|EDS76888.1| ATP-dependent protease, Lon family [Clostridium botulinum C str.
           Eklund]
          Length = 635

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 54/240 (22%), Positives = 87/240 (36%), Gaps = 56/240 (23%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +  +S+LRP++  E  GQ     +L      +K  +    H++  GPPG+GKTT A++  
Sbjct: 163 NNILSMLRPKSFSEIVGQERPIKSL-----ISKLASPYPQHIILYGPPGVGKTTAARLAL 217

Query: 76  RELG----------------------VNFRSTSGPVIAKA---------GDLAAL----- 99
            E+                        + R  + P++             DLA +     
Sbjct: 218 EEVKKLKHTPFGESAKFVEVDGTTLRWDPREIANPLLGSVHDPIYQGSKRDLAEVGVPEP 277

Query: 100 ----LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL----------DLMVGEGPSAR 145
               +T      VLFIDEI  L  I++  L   +ED ++          D  + +     
Sbjct: 278 KPGLVTEAHGG-VLFIDEIGELDTILQNKLLKVLEDKRVEFSSSYYDPDDENIPKYIKYL 336

Query: 146 SVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTD 205
                 + F LI ATTR     NP        +        D+K IV+  A    + + D
Sbjct: 337 FEHGAPADFVLIGATTREPRDINPALRSRCTEVYFEPLSANDIKNIVENAALRLNINLED 396


>gi|15895896|ref|NP_349245.1| Lon-like ATP-dependent protease [Clostridium acetobutylicum ATCC
           824]
 gi|15025665|gb|AAK80585.1|AE007761_4 Lon-like ATP-dependent protease [Clostridium acetobutylicum ATCC
           824]
 gi|325510048|gb|ADZ21684.1| Lon-like ATP-dependent protease [Clostridium acetobutylicum EA
           2018]
          Length = 566

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 56/244 (22%), Positives = 82/244 (33%), Gaps = 55/244 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP++ +E  GQ      LK     A        HV+  GPPG+GKT  A+ +A E     
Sbjct: 62  RPKSFDEIIGQKNGIKTLK-----ASICGPNPQHVIIYGPPGVGKTAAAR-LALEYAKTC 115

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDV---------------------------------- 108
             +     AK  ++ A     ++R +                                  
Sbjct: 116 AFSPFNDKAKFVEIDATTLRFDERGIADPLIGSVHDPIYQGAGKFGNAGIPQPKMGAVSR 175

Query: 109 -----LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSR---------- 153
                LFIDEI  L+ I    L   MED ++        S+        R          
Sbjct: 176 AHGGVLFIDEIGELNPIEMNKLLKVMEDRKVFFDSAYYNSSSENMPEYIREVFEEGFPAD 235

Query: 154 FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAM 213
           F LI ATT+     NP      I I     + E++K I +   +   + +  +A   IAM
Sbjct: 236 FRLIGATTKNPEEINPAIRSRCIEIFFRALDAEEIKIIAKNAVEKINVNIDSKALELIAM 295

Query: 214 RSRG 217
            S  
Sbjct: 296 YSSN 299


>gi|291523175|emb|CBK81468.1| DNA polymerase III, subunits gamma and tau [Coprococcus catus GD/7]
          Length = 528

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 78/224 (34%), Gaps = 21/224 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP   +E  GQ    + LK  IE  +         LF G  G GKT++A++ A+ +    
Sbjct: 11  RPSNFDEVRGQDHIVTTLKNQIEMNRIGHAY----LFCGTRGTGKTSIAKIFAKAVNCEH 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P    A  +   +      +V+ ID      +  +  I EE+ Y   E      +
Sbjct: 67  PVNGSPCNECA--MCRAVNEQRSMNVIEIDAASNNGVDNIREIREEVAYSPSEGKYKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++   S    I ATT    +   +  R              +
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPSYVIFILATTEAHKIPITILSRCQ-RYDFRRISTGTI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
              ++  A   G+   D A   +A  + G+ R A  LL +   F
Sbjct: 184 AGRLRELADAEGIDAEDAALAYVARMADGSMRDALSLLDQCNAF 227


>gi|67470640|ref|XP_651283.1| replication factor C familiy protein [Entamoeba histolytica
           HM-1:IMSS]
 gi|56468001|gb|EAL45896.1| replication factor C familiy protein [Entamoeba histolytica
           HM-1:IMSS]
          Length = 325

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 79/226 (34%), Gaps = 37/226 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP T +   G      +LK FI A       + H+LF GPPG GKTT A  + +
Sbjct: 4   PWVEKYRPSTTDGIFGHEYILESLKQFINA-----NQIPHMLFYGPPGTGKTTTALAIVK 58

Query: 77  ELGVNFRST-----SGPVIAKAGDLAALLTN-LEDRDV-------LFIDEIHRLSIIVEE 123
           +L     S      +         +   + +    R +       + +DE  +L+   + 
Sbjct: 59  QLCGTKFSALVLELNASDERGIDVVRDQIKSFASTRTLYTNCTKFIILDESDKLTKDAQN 118

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
            L   +E F                   +    I     V L+T  +Q R    +R    
Sbjct: 119 ALRRTLEQFS------------------ANCRFIFICNEVHLITPAIQSRCA-KMRFGPL 159

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
             + L  IV+      G+ + ++A   I   S+G  R     L+ +
Sbjct: 160 SPDALTKIVENITMKEGMEIDEDAKKSIIEISKGDARSIINTLQAL 205


>gi|323308474|gb|EGA61719.1| Rfc2p [Saccharomyces cerevisiae FostersO]
          Length = 353

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 49/258 (18%), Positives = 85/258 (32%), Gaps = 48/258 (18%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L +     +   +   RP+ L+E T Q  A + LK  +++A      L H+LF GPPG G
Sbjct: 16  LAAEQSLAQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSA-----NLPHMLFYGPPGTG 70

Query: 67  KTTLAQVVAR-------------ELGVNFRSTSGPVIAKAGDLAAL-LTNLEDRD----- 107
           KT+    + +             EL  +       V  K    A L ++     D     
Sbjct: 71  KTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKIFARLTVSKPSKHDLENYP 130

Query: 108 -----VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTR 162
                ++ +DE   ++   +  L   ME +                  ++RF        
Sbjct: 131 CPPYKIIILDEADSMTADAQSALRRTMETYS----------------GVTRF--CLICNY 172

Query: 163 VGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
           V  + +PL  R     R    +  +    ++  ++   +   D     I   S G  R  
Sbjct: 173 VTRIIDPLASRCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLEXILDISAGDLRRG 231

Query: 223 GRLLRRVRDFAEVAHAKT 240
             LL+     A+      
Sbjct: 232 ITLLQSASKRAQYLGDGK 249


>gi|307717510|gb|ADN88808.1| recombination factor protein [Listeria innocua]
          Length = 191

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 47/202 (23%), Positives = 82/202 (40%), Gaps = 17/202 (8%)

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           G+GKT++A  +A      FR+ +     K   ++ A    +    +L +DE+HRL    +
Sbjct: 1   GIGKTSIASAIAGSTKYAFRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQ 60

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           + L P +E   + +++G   S   + IN +    I + T++  L     +   I +    
Sbjct: 61  DFLLPLLESGAI-ILIGATTSNPYIAINPA----IRSRTQIFELKPLTVEDIMITMDRAL 115

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT-- 240
           ++ E       RG     + + + A    A  S G  R A   L      +E        
Sbjct: 116 HDKE-------RGLGNYEVKIDEFAKKHFATASNGDVRSALNALELAVISSEPNEDGIIH 168

Query: 241 ITREIADAALLRL--AIDKMGF 260
           IT E+A+  L +   A DK G 
Sbjct: 169 ITLEVAEECLQKKSLAHDKDGD 190


>gi|15838406|ref|NP_299094.1| DNA polymerase III subunits gamma and tau [Xylella fastidiosa 9a5c]
 gi|9106885|gb|AAF84614.1|AE004002_4 DNA polymerase III subunit [Xylella fastidiosa 9a5c]
          Length = 608

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 56/309 (18%), Positives = 97/309 (31%), Gaps = 72/309 (23%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH-VLFVGPPGLGKTTLAQVVARELGVN 81
           RP+   E  GQ      L   +E+ +     L H  LF G  G+GKTT+A++ A+ L   
Sbjct: 11  RPKRFAELVGQEHVVRALSNALESGR-----LHHAFLFTGTRGVGKTTIARIFAKSLNCE 65

Query: 82  ------------------------FRSTSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                                D+  ++ N +         V  I
Sbjct: 66  QGTSADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVREMIENAQYMPSRGKFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSKAAFNALLKTLEE------------------PPPHVKFLLATTDPQKLPVTVL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L   + E ++  + +      +   D A  E++  + G+ R    LL +   
Sbjct: 168 SRC-LQFNLKRLDEEQIQRQIAKILTAEQITADDAAIIELSKAADGSLRDGLSLLDQAIA 226

Query: 232 FAE-----------VAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV 280
           +A            +        E+  AAL+    D++      LR +  +A        
Sbjct: 227 YAGGVLREGAVRDMLGTVDRTQVEVMLAALIAGDGDRL------LRVIATLAEFSPDWGG 280

Query: 281 GIETISAGL 289
            +E ++  L
Sbjct: 281 VLEALAEAL 289


>gi|190345167|gb|EDK37005.2| hypothetical protein PGUG_01103 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 327

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 82/246 (33%), Gaps = 40/246 (16%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +S E   +   RP  L++  G  E    LK+      A+   + H++  G PG+GKTT  
Sbjct: 6   LSLELPWVEKYRPHKLDDIVGNEETVERLKLI-----AQDGNMPHMIISGLPGIGKTTSI 60

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAAL--LTN-------------LEDRDVLFIDEIHR 116
             +A EL          +   A D   +  + N                  ++ +DE   
Sbjct: 61  HCLAYELLGKTMYDQATLELNASDDRGIDVVRNKIKQFAQTKISLPPGRHKIIILDEADS 120

Query: 117 LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
           ++   ++ L   ME +                 N +RF    A  +   +  PLQ R  I
Sbjct: 121 MTPGAQQALRRTMEIYS----------------NTTRFAF--ACNQSSKIIEPLQSRCAI 162

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA-GRLLRRVRDFAEV 235
                  + + L  +++  AK   +    +    +   + G  R A   +   V  F  V
Sbjct: 163 LRYNKLADDQVLSRLLE-IAKAEDVKYNSQGLQALIFTAEGDMRQAINNMQSTVAGFGFV 221

Query: 236 AHAKTI 241
                 
Sbjct: 222 DDVNVF 227


>gi|51598717|ref|YP_072905.1| DNA polymerase III subunits gamma and tau [Borrelia garinii PBi]
 gi|51573288|gb|AAU07313.1| DNA polymerase III, subunits gamma and tau [Borrelia garinii PBi]
          Length = 560

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 54/226 (23%), Positives = 85/226 (37%), Gaps = 25/226 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPR      GQ      LK  IE  K         +F GP G+GKT+ A+  AR L    
Sbjct: 12  RPRDFNSLEGQDFVVETLKHSIEKNKIANAY----IFSGPRGVGKTSSARAFARCLNCK- 66

Query: 83  RSTSGPVIAKAGDLA--ALLTNLEDRDVLFIDEIHRLSII-----VEEILYPAMEDFQLD 135
              +GP +   G+      + N    DV+ ID     S+       EEI++P        
Sbjct: 67  ---NGPTVMPCGECNNCKSIENDSSLDVIEIDGASNTSVQDIRQIKEEIMFPPAISKYRI 123

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             ++++   +    I ATT    L   ++ R           +E
Sbjct: 124 YIIDEVHMLSNSAFNALLKTIEEPPNYIVFIFATTESHKLPETIKSRCQ-HFSFKLLSLE 182

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
            +  ++++      +   DEA   IA +S G+ R A  L  +V  F
Sbjct: 183 KIYNMLKKVCFEDHIKYEDEALKWIAYKSSGSVRDAYTLFDQVVSF 228


>gi|317506432|ref|ZP_07964235.1| DNA polymerase III [Segniliparus rugosus ATCC BAA-974]
 gi|316255263|gb|EFV14530.1| DNA polymerase III [Segniliparus rugosus ATCC BAA-974]
          Length = 322

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 48/238 (20%), Positives = 85/238 (35%), Gaps = 27/238 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP  L++  GQ      L V +EA +         LF GP G GKT+LA+++AR
Sbjct: 2   ALYRRYRPERLDQVLGQDHVTRPLSVALEAGRLGHAY----LFSGPRGCGKTSLARILAR 57

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR----DVLFID-----EIHRLSIIVEEILYP 127
            +        GP     G   + L   E      DV+ +D      +     + +   Y 
Sbjct: 58  SVNCER----GPTANPCGVCESCLALAEGGPGSVDVIELDAASHGGVDDTRDLRDRAFYA 113

Query: 128 AMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
                +   ++ E             + V+        + ATT    +   ++ R     
Sbjct: 114 PARSTKRVFIIDEAHMVTTAGFNALLKIVEEPPPHLIFVFATTEPEKVLPTIRSR-THHY 172

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
                  + L+ ++ +  +   + V  +    +   S G+PR A  +L ++   AE A
Sbjct: 173 PFRLLPPKTLRELLVKVVEAEQMTVEHDVYPLVIRASGGSPRDALSILDQLMSGAENA 230


>gi|294657961|ref|XP_002770526.1| DEHA2E22286p [Debaryomyces hansenii CBS767]
 gi|199433083|emb|CAR65867.1| DEHA2E22286p [Debaryomyces hansenii]
          Length = 343

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 58/154 (37%), Gaps = 20/154 (12%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE- 77
           +   RP +L+E  GQ +    ++ F+   K     L H+LF GPPG GKT+    +ARE 
Sbjct: 26  VEKYRPDSLDEVYGQQDIVDTVRKFVHEGK-----LPHLLFYGPPGTGKTSTIIALAREI 80

Query: 78  ----LGVNFRSTSGPVIAKAGDLAALLTNL--------EDRDVLFIDEIHRLSIIVEEIL 125
                       +         +   + N         +   ++ +DE   ++ + +  L
Sbjct: 81  YGPNYKNMVLELNASDDRGIDVVRNQIKNFASTMQIFSKGFKLIILDEADAMTSVAQNSL 140

Query: 126 YPAMEDFQLD--LMVGEGPSARSVKINLSRFTLI 157
              +E +  +    +    S +     +SR T  
Sbjct: 141 RRIIEKYTKNTRFCILANYSHKLNPALISRCTRF 174


>gi|241955893|ref|XP_002420667.1| AAA ATPase family member, putative; replication factor C (RF-C)
           subunit, putative [Candida dubliniensis CD36]
 gi|223644009|emb|CAX41749.1| AAA ATPase family member, putative [Candida dubliniensis CD36]
          Length = 339

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 41/218 (18%), Positives = 72/218 (33%), Gaps = 17/218 (7%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP  LEE  GQ E    ++ F+E  K     L H+LF GPPG GKT+    +A+
Sbjct: 10  PWVEKYRPDNLEEVKGQQEIVDTVRKFVETRK-----LPHLLFYGPPGTGKTSTIIALAK 64

Query: 77  E------LGVNFRSTSGPVIAKAGDLAALLTN-LEDRDVLFIDEIHRLSIIVEEILYPAM 129
           E              +         +   + N    R +         SI  ++     +
Sbjct: 65  EIYGSINYKDMILELNASDDRGIDVVRNQIKNFASTRQIF----TKNNSINNDQFKLIIL 120

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           ++      + +    R ++                 L   L  R     R    +I  +K
Sbjct: 121 DEADAMTNIAQNSLRRVIEKFTKNCRFCILANYSHKLNPALISRC-TRFRFTPIDISAIK 179

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             +        + ++ +A   +   S G  R A  +L+
Sbjct: 180 DRLNIVIIKENVNISSDAIDALLKLSNGDMRRALNVLQ 217


>gi|261405362|ref|YP_003241603.1| Sigma 54 interacting domain-containing protein [Paenibacillus sp.
           Y412MC10]
 gi|261281825|gb|ACX63796.1| Sigma 54 interacting domain protein [Paenibacillus sp. Y412MC10]
          Length = 576

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 61/288 (21%), Positives = 96/288 (33%), Gaps = 56/288 (19%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           R+VS         RP+T+++  GQ +    LK  + +A  +     HV+  GPPG+GKT 
Sbjct: 51  RSVSLTKPLAEKTRPQTMDDIVGQKDGLRALKAALCSANPQ-----HVIVYGPPGVGKTA 105

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR----------------------- 106
            A+VV  E   N +S      AK  ++ A     ++R                       
Sbjct: 106 AARVVMEEAKKNPQSPFKY-DAKFTEIDATTARFDERGIADPLIGSVHDPIYQGAGAMGV 164

Query: 107 ----------------DVLFIDEIHRLSIIVEEILYPAMEDFQLDL------MVGEGPSA 144
                            +LFIDEI  L  I    L   +ED ++ L             A
Sbjct: 165 AGIPQPKPGAVTKAHGGILFIDEIGELHPIQMNKLLKVLEDRKVLLESAYYNSEDANTPA 224

Query: 145 RSVKI----NLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
               I      + F L+ ATTR      P      + I       E++  I +   +  G
Sbjct: 225 YIHDIFQNGLPADFRLVGATTRSPEEIAPALRSRCMEIFFRPLLPEEIGRIAEDAIQKIG 284

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           L      A E+  +     R A  +++     A       +     + 
Sbjct: 285 LN-APPEAVEVVKQYCSNGREAVNMIQLAAGLALTEKRDALRAADVEW 331


>gi|147902441|ref|NP_001085526.1| MGC80325 protein [Xenopus laevis]
 gi|49117945|gb|AAH72889.1| MGC80325 protein [Xenopus laevis]
          Length = 335

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 78/240 (32%), Gaps = 38/240 (15%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M  E       S+    +   RP+TL+E     +  S ++ FI       + L H+LF G
Sbjct: 1   MVSENKGPSGQSRNLPWVEKYRPQTLDELISHQDILSTIQRFIS-----EDKLPHLLFYG 55

Query: 62  PPGLGKTTLAQVVA------RELGVNFRSTSGPVIAKAGDLAA-LLTNLEDRDVL----- 109
           PPG GKT+     A      RE        +         +   +L+    R +      
Sbjct: 56  PPGTGKTSTILACAKQLYKDREFNSMVLELNASDDRGIDIVRGPVLSFASTRTIFKKGFK 115

Query: 110 --FIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
              +DE   ++   +  L   +E F       E      +   LS+              
Sbjct: 116 LVILDEADAMTQDAQNALRRVIEKF------TENTRFCLICNYLSKIIP----------- 158

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             LQ R     R      E +   ++   K   + ++ +    +   S G  R +  +L+
Sbjct: 159 -ALQSRC-TRFRFGPLSSEMMIPRLEHVVKEEHVDISPDGMKALVTLSNGDMRRSLNILQ 216


>gi|307717484|gb|ADN88795.1| recombination factor protein [Listeria monocytogenes]
 gi|307717490|gb|ADN88798.1| recombination factor protein [Listeria monocytogenes]
 gi|307717492|gb|ADN88799.1| recombination factor protein [Listeria monocytogenes]
 gi|307717494|gb|ADN88800.1| recombination factor protein [Listeria monocytogenes]
 gi|307717528|gb|ADN88817.1| recombination factor protein [Listeria monocytogenes]
 gi|307717542|gb|ADN88824.1| recombination factor protein [Listeria monocytogenes]
 gi|307717544|gb|ADN88825.1| recombination factor protein [Listeria monocytogenes]
 gi|307717546|gb|ADN88826.1| recombination factor protein [Listeria monocytogenes]
 gi|307717558|gb|ADN88832.1| recombination factor protein [Listeria monocytogenes]
 gi|307717560|gb|ADN88833.1| recombination factor protein [Listeria monocytogenes]
 gi|307717562|gb|ADN88834.1| recombination factor protein [Listeria monocytogenes]
 gi|307717568|gb|ADN88837.1| recombination factor protein [Listeria monocytogenes]
          Length = 191

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 45/202 (22%), Positives = 82/202 (40%), Gaps = 17/202 (8%)

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           G+GKT++A  +A      FR+ +     K   ++ A    +    +L +DE+HRL    +
Sbjct: 1   GIGKTSIASAIAGSTKYAFRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQ 60

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           + L P +E   + +++G   S   + IN +    I + T++  L     +   I      
Sbjct: 61  DFLLPLLESGAI-ILIGATTSNPYIAINPA----IRSRTQIFELKPLTVEDIMI------ 109

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT-- 240
             ++   +  +RG     + + + A    A  S G  R A   L      +E        
Sbjct: 110 -TMDRALSDKERGLGNYDVEIDEVAKKHFATASNGDVRSALNALELAVISSEPNEDGVIH 168

Query: 241 ITREIADAALLRL--AIDKMGF 260
           IT ++A+  L +   A DK G 
Sbjct: 169 ITLDVAEECLQKKSLAHDKDGD 190


>gi|313906298|ref|ZP_07839641.1| DNA polymerase III, subunits gamma and tau [Eubacterium
           cellulosolvens 6]
 gi|313468854|gb|EFR64213.1| DNA polymerase III, subunits gamma and tau [Eubacterium
           cellulosolvens 6]
          Length = 542

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 80/230 (34%), Gaps = 20/230 (8%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T EE  GQ      LK  + A +         LF G  G GKTT+A+V AR
Sbjct: 5   ALYRKFRPTTFEEVKGQDHIVKTLKNQLRANRIGHAY----LFCGTRGTGKTTIAKVFAR 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +        G    +      +L    +  V+ ID      +  +  I EE+ Y   + 
Sbjct: 61  AVNCEHPLEDGSPCNECETCRGILKGTSNN-VIEIDAASNNGVDNIREIREEVGYRPTQG 119

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT +  +   +  R       + 
Sbjct: 120 KYKVYIIDEVHMLSTGAFNALLKTLEEPPEYVIFILATTEINKIPVTILSRCQ-RYNFHR 178

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
             I+ +   ++       +   D A   +A  + G+ R A  LL +   F
Sbjct: 179 ITIDTIAGRLRELLTRENVEAEDRAVRYVAKTADGSMRDALSLLDQCIAF 228


>gi|224532078|ref|ZP_03672710.1| DNA polymerase III, subunits gamma and tau [Borrelia valaisiana
           VS116]
 gi|224511543|gb|EEF81949.1| DNA polymerase III, subunits gamma and tau [Borrelia valaisiana
           VS116]
          Length = 560

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 54/226 (23%), Positives = 85/226 (37%), Gaps = 25/226 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPR      GQ      LK  IE  K         +F GP G+GKT+ A+  AR L    
Sbjct: 12  RPRDFNSLEGQDFVVETLKHSIEKNKIANAY----IFSGPRGVGKTSSARAFARCLNCK- 66

Query: 83  RSTSGPVIAKAGDLA--ALLTNLEDRDVLFIDEIHRLSII-----VEEILYPAMEDFQLD 135
              +GP +   G+      + N    DV+ ID     S+       EEI++P        
Sbjct: 67  ---NGPTVMPCGECNNCKSIENDSSLDVVEIDGASNTSVQDIRQIKEEIMFPPAISKYRI 123

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             ++++   +    I ATT    L   ++ R           +E
Sbjct: 124 YIIDEVHMLSNSAFNALLKTIEEPPNYIVFIFATTESHKLPETIKSRCQ-HFSFKLLSLE 182

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
            +  ++++      +   DEA   IA +S G+ R A  L  +V  F
Sbjct: 183 KIYNMLKKVCFEDHIKYEDEALKWIAYKSSGSVRDAYTLFDQVVSF 228


>gi|225562412|gb|EEH10691.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
          Length = 394

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 84/272 (30%), Gaps = 53/272 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+TL++   Q    + L+  ++A+      L H+LF GPPG GKT+    +A+
Sbjct: 36  PWVEKYRPKTLDDVASQEHTVTVLQRTLQAS-----NLPHMLFYGPPGTGKTSTILALAK 90

Query: 77  -------------ELGVNFRSTSGPVIAKAGDLAALL--------TNLEDR------DVL 109
                        EL  +       V  K  D A +         +   ++       ++
Sbjct: 91  SLYGPQLYRSRILELNASDERGISIVREKIKDFARMQLSHPPLSDSAYREKYPCPPFKII 150

Query: 110 FIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA-TTRVGLLTN 168
            +DE   ++   +  L   ME +                   SR T        V  + +
Sbjct: 151 ILDEADSMTQDAQSALRRTMERY-------------------SRITRFCLVCNYVTRIID 191

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
           PL  R     R    +       ++  A++  L + D     +   S G  R A   L+ 
Sbjct: 192 PLASRCS-KFRFKALDGSAAGCRLEEIARMEKLRLADGCIRTLIRCSEGDLRRAITYLQS 250

Query: 229 VRDFAEVAHAKTITREIADAALLRLAIDKMGF 260
                          +            + G 
Sbjct: 251 AARLVGSTEGTKQGGKDESGDTEMADAGEDGI 282


>gi|240281117|gb|EER44620.1| DNA replication factor C subunit Rfc2 [Ajellomyces capsulatus H143]
 gi|325092385|gb|EGC45695.1| activator 1 41 kDa subunit [Ajellomyces capsulatus H88]
          Length = 394

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 84/272 (30%), Gaps = 53/272 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+TL++   Q    + L+  ++A+      L H+LF GPPG GKT+    +A+
Sbjct: 36  PWVEKYRPKTLDDVASQEHTVTVLQRTLQAS-----NLPHMLFYGPPGTGKTSTILALAK 90

Query: 77  -------------ELGVNFRSTSGPVIAKAGDLAALL--------TNLEDR------DVL 109
                        EL  +       V  K  D A +         +   ++       ++
Sbjct: 91  SLYGPQLYRSRILELNASDERGISIVREKIKDFARMQLSHPPLSDSAYREKYPCPPFKII 150

Query: 110 FIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA-TTRVGLLTN 168
            +DE   ++   +  L   ME +                   SR T        V  + +
Sbjct: 151 ILDEADSMTQDAQSALRRTMERY-------------------SRITRFCLVCNYVTRIID 191

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
           PL  R     R    +       ++  A++  L + D     +   S G  R A   L+ 
Sbjct: 192 PLASRCS-KFRFKALDGSAAGCRLEEIARMEKLRLADGCIRTLIRCSEGDLRRAITYLQS 250

Query: 229 VRDFAEVAHAKTITREIADAALLRLAIDKMGF 260
                          +            + G 
Sbjct: 251 AARLVGSTEGTKQGGKDESGDTEMADAGEDGI 282


>gi|71900519|ref|ZP_00682648.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71729695|gb|EAO31797.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 541

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 56/309 (18%), Positives = 97/309 (31%), Gaps = 72/309 (23%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH-VLFVGPPGLGKTTLAQVVARELGVN 81
           RP+   E  GQ      L   +E+ +     L H  LF G  G+GKTT+A++ A+ L   
Sbjct: 11  RPKRFAELVGQEHVVRALSNALESGR-----LHHAFLFTGTRGVGKTTIARIFAKSLNCE 65

Query: 82  ------------------------FRSTSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                                D+  ++ N +         V  I
Sbjct: 66  QGTSADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVREMIENAQYMPSRGKFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSKAAFNALLKTLEE------------------PPPHVKFLLATTDPQKLPVTVL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L   + E ++  + +      +   D A  E++  + G+ R    LL +   
Sbjct: 168 SRC-LQFNLKRLDEEQIQRQIAKILTAEQITADDAAIIELSKAADGSLRDGLSLLDQAIA 226

Query: 232 FAE-----------VAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV 280
           +A            +        E+  AAL+    D++      LR +  +A        
Sbjct: 227 YAGGTLREGAVRDMLGTVDRTQVEVMLAALIAGDGDRL------LRVIATLAEFSPDWGG 280

Query: 281 GIETISAGL 289
            +E ++  L
Sbjct: 281 VLEALAEAL 289


>gi|227827645|ref|YP_002829425.1| replication factor C large subunit [Sulfolobus islandicus M.14.25]
 gi|229584849|ref|YP_002843351.1| replication factor C large subunit [Sulfolobus islandicus M.16.27]
 gi|259585252|sp|C3N5N1|RFCL_SULIA RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|259585254|sp|C3MVD2|RFCL_SULIM RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|227459441|gb|ACP38127.1| AAA ATPase central domain protein [Sulfolobus islandicus M.14.25]
 gi|228019899|gb|ACP55306.1| AAA ATPase central domain protein [Sulfolobus islandicus M.16.27]
          Length = 405

 Score = 74.0 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 82/217 (37%), Gaps = 32/217 (14%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPR+L++   Q  A   L+ +IE+          VL  GPPG+GKTTLA+ +A +  +  
Sbjct: 9   RPRSLKDVENQDGAKKELQEWIESWLNGKPNAKAVLLHGPPGVGKTTLAEALAHDYNLEL 68

Query: 83  RSTSGPVIAKAGDLAALLTNLE--------DRDVLFIDEIHRLSIIVE----EILYPAME 130
              +     K  D+ ++                ++ +DE+  +++  +    + +   +E
Sbjct: 69  LEMNASDSRKLQDIKSVAEKASVYGSIFGTRGKLILLDEVDGINVREDTGAIQGILELIE 128

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
             +  L++            L   T +    ++G                       L+ 
Sbjct: 129 KTKYPLIMTANDPWNPALRELRNKTKMVGLNKLGKY--------------------PLRR 168

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
           ++++  +   +   DEA   I   S G  R A  +L+
Sbjct: 169 LLKKICQAEKIICDDEALNYIIDTSEGDARYAINMLQ 205


>gi|225552254|ref|ZP_03773194.1| DNA polymerase III, subunits gamma and tau [Borrelia sp. SV1]
 gi|225371252|gb|EEH00682.1| DNA polymerase III, subunits gamma and tau [Borrelia sp. SV1]
          Length = 560

 Score = 74.0 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 66/308 (21%), Positives = 112/308 (36%), Gaps = 40/308 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPR      GQ      LK  IE  K         +F GP G+GKT+ A+  AR L    
Sbjct: 12  RPRDFNSLEGQDFVIETLKHSIEKNKIANAY----IFSGPRGVGKTSSARAFARCLNCR- 66

Query: 83  RSTSGPVIAKAGDLA--ALLTNLEDRDVLFIDEIHRLSII-----VEEILYPAMEDFQLD 135
              +GP +   G+ +    + N    DV+ ID     S+       EEI++P        
Sbjct: 67  ---NGPTVMPCGECSNCKSIENDSSLDVVEIDGASNTSVQDIRQIKEEIMFPPAISKYRI 123

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             ++++   +    I ATT    L   ++ R           +E
Sbjct: 124 YIIDEVHMLSNSAFNALLKTIEEPPNYIVFIFATTESHKLPETIKSRCQ-HFSFKLLSLE 182

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA----HAKTIT 242
            +  ++++      +   DEA   IA +S G+ R A  L  ++  F +        ++  
Sbjct: 183 KIYNMLKKVCLEDDIKYEDEALKWIAYKSSGSVRDAYTLFDQIVSFTDSNIKLDQIRSKM 242

Query: 243 REIADAALLRLAIDKMGFDQLDLR-YLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
               D  L +L++  +G D  +L   L  I  +       +           D+IE   E
Sbjct: 243 GLTNDEFLEKLSVSILGEDVKELICVLDSIFSSGVSYEQFL----------LDSIEFFRE 292

Query: 302 PYMIQQGF 309
              ++ G 
Sbjct: 293 ALFLKIGI 300


>gi|170084297|ref|XP_001873372.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164650924|gb|EDR15164.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 341

 Score = 74.0 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 80/248 (32%), Gaps = 39/248 (15%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           +     E   +   RP  L++  G  +    LKV      AR     H++  G PG+GKT
Sbjct: 13  AAETPYELPWVEKYRPTVLDDVVGNSDTIERLKVI-----ARDGNCPHIIISGLPGIGKT 67

Query: 69  TLAQVVAR------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEI 114
           T    +A             EL  +       V  K    A     L      ++ +DE 
Sbjct: 68  TSIHCLAHQLLGDAYKEGVLELNASDDRGIDVVRNKIKTFAQKKVTLPPGRHKIIILDEA 127

Query: 115 HRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRF 174
             ++   ++ L   ME F                 N +RF    A      +  P+Q R 
Sbjct: 128 DSMTPGAQQALRRTMEIFS----------------NTTRF--CLACNMSNKIIEPIQSRC 169

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA-GRLLRRVRDFA 233
            I       + E LK +++   ++  +   D+    +   S G  R A   L      F 
Sbjct: 170 AILRYAKLRDQEILKRLLE-ICEMEKVEYNDDGLTALIFTSEGDMRQAINNLQSTYSGFG 228

Query: 234 EVAHAKTI 241
            V+     
Sbjct: 229 FVSGDNVF 236


>gi|256398119|ref|YP_003119683.1| DNA polymerase III subunits gamma and tau [Catenulispora acidiphila
           DSM 44928]
 gi|256364345|gb|ACU77842.1| DNA polymerase III, subunits gamma and tau [Catenulispora
           acidiphila DSM 44928]
          Length = 863

 Score = 74.0 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 58/314 (18%), Positives = 93/314 (29%), Gaps = 45/314 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T EE  GQ      L+  +   +         LF GP G GKTT A+++AR
Sbjct: 21  ALYRRYRPETFEEVVGQEHVTLPLQQALRNGRVNHAY----LFSGPRGCGKTTSARILAR 76

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR----DVLFIDEIHRLSIIVEEILY------ 126
            L        GP     G   + +          DV+ ID      +     L       
Sbjct: 77  CLNCE----QGPTPTPCGTCRSCVELANGGSGSIDVIEIDAASHGGVDDARDLRERAFFA 132

Query: 127 PAMEDFQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
           PA   F++ ++         G     + V+        I ATT    +   ++ R     
Sbjct: 133 PAASRFKIYIIDEAHMVTSAGFNALLKVVEEPPPHLKFIFATTEPEKVIGTIRSR-THHY 191

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
                    L+  +       G+ V  E    +     G+ R A  +L ++   A+    
Sbjct: 192 PFRLIPPGVLREHLNDITAREGIKVEPEVLPLVVRAGAGSARDAMSVLDQLLAGADENG- 250

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
                     A+             D   L  +   F G        +A        +E 
Sbjct: 251 -------VTYAMATGL-----LGYTDAALLDRLVEAFAGNDG-----AAVFGLVDQVVES 293

Query: 299 LIEPYMIQQGFIQR 312
             +P       ++R
Sbjct: 294 GHDPRRFLTDLLER 307


>gi|51894450|ref|YP_077141.1| Lon-like ATP-dependent protease [Symbiobacterium thermophilum IAM
           14863]
 gi|51858139|dbj|BAD42297.1| Lon-like ATP-dependent protease [Symbiobacterium thermophilum IAM
           14863]
          Length = 659

 Score = 74.0 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 60/231 (25%), Positives = 88/231 (38%), Gaps = 56/231 (24%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV-- 74
           +   LLRPR LEE  GQ  A   L      AK  +    HV+  GPPG+GKTT+A++V  
Sbjct: 178 SAAELLRPRALEEVVGQDRAIQAL-----LAKVASPFPQHVILYGPPGVGKTTVARLVLE 232

Query: 75  -AREL-------------------GVNFRSTSGPVIAKA---------GDLAA------- 98
            A+ +                     + R  + P++             DLA        
Sbjct: 233 KAKTMPHTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAESGVPEPR 292

Query: 99  --LLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL---MVGEGPSARSVKINL-- 151
             L+T+     VLFIDEI  +  +++  L   +ED ++        E        I    
Sbjct: 293 TGLVTDAHGG-VLFIDEIGEMDPLLQTKLLKVLEDKRVTFESSYYDENDPNVPKYIKKLF 351

Query: 152 -----SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
                + F LI ATTR     NP        +       ED+  IV++ A+
Sbjct: 352 EEGAPADFVLIGATTRDPEDINPALRSRCAEVFFEPLTPEDIALIVRQAAE 402


>gi|159904325|ref|YP_001551669.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus
           str. MIT 9211]
 gi|159889501|gb|ABX09715.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus
           str. MIT 9211]
          Length = 578

 Score = 74.0 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 58/280 (20%), Positives = 104/280 (37%), Gaps = 22/280 (7%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +  RP++ ++  GQ    S LK     A          LF GP G GKT+ A+++AR L 
Sbjct: 10  NKYRPQSFDDLVGQKVIASTLKQ----ALLTNRIAPAYLFCGPRGTGKTSSARILARSLN 65

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQL 134
                          +L   ++     DV+ ID      +  +  ++E+  +  +     
Sbjct: 66  CLNVEEPTINPCCQCNLCQTISAGNALDVIEIDAASNTGVDNIRDLIEKSKFAPVIARWK 125

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             ++ E             ++++   SR   I ATT    L   +  R       +  E+
Sbjct: 126 IYVIDECHMLSAAAFNALLKTLEEPPSRVVFILATTDPQRLLPTIISRCQ-RFDFSQIEL 184

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
            DL   +Q  A    + +  EA   +A RS+G  R A  +L ++    +      +   +
Sbjct: 185 NDLINHLQEIANKEEIGIEKEAINLVARRSQGGLRDAQSMLDQLSLLPQPITVNAVLDLL 244

Query: 246 ADAALLRLAIDKMGFDQLD-LRYLTMIARNFGGG--PVGI 282
            + +  +L    M   + D L  L +       G  P+GI
Sbjct: 245 GEVSEEKLLDLAMALTKKDPLNLLLICRELINNGKDPMGI 284


>gi|307717512|gb|ADN88809.1| recombination factor protein [Listeria monocytogenes]
 gi|307717548|gb|ADN88827.1| recombination factor protein [Listeria monocytogenes]
          Length = 191

 Score = 74.0 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 45/202 (22%), Positives = 82/202 (40%), Gaps = 17/202 (8%)

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           G+GKT++A  +A      FR+ +     K   ++ A    +    +L +DE+HRL    +
Sbjct: 1   GIGKTSIASAIAGSTKYAFRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQ 60

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           + L P +E   + +++G   S   + IN +    I + T++  L         + +    
Sbjct: 61  DFLLPLLESGAI-ILIGATTSNPYIAINPA----IRSRTQIFELKP-------LTVADIM 108

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT-- 240
             I+   +  +RG     + + + A    A  S G  R A   L      +E        
Sbjct: 109 ITIDRALSDKERGLGNYDVEIDEVAKKHFATASNGDVRSALNALELAVISSEPNEDGVIH 168

Query: 241 ITREIADAALLRL--AIDKMGF 260
           IT ++A+  L +   A DK G 
Sbjct: 169 ITLDVAEECLQKKSLAHDKDGD 190


>gi|148233376|ref|NP_001080677.1| replication factor C (activator 1) 5, 36.5kDa [Xenopus laevis]
 gi|27882432|gb|AAH44712.1| Rfc5-prov protein [Xenopus laevis]
          Length = 335

 Score = 74.0 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 43/240 (17%), Positives = 78/240 (32%), Gaps = 38/240 (15%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M  E       S+    +   RP+TL++     +  S ++ FI       + L H+LF G
Sbjct: 1   MVSENKGQPVQSRNLPWVEKYRPQTLDDLISHQDILSTIQRFIS-----EDKLPHLLFYG 55

Query: 62  PPGLGKTTLAQVVA------RELGVNFRSTSGPVIAKAGDLAA-LLTNLEDRDVL----- 109
           PPG GKT+     A      RE        +         +   +L+    R +      
Sbjct: 56  PPGTGKTSTILACAKQLYKDREFNSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFK 115

Query: 110 --FIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
              +DE   ++   +  L   +E F       E      +   LS+              
Sbjct: 116 LVILDEADAMTQDAQNALRRVIEKF------TENTRFCLICNYLSKIIP----------- 158

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             LQ R     R      + +   ++   K   + ++ +    +   S G  R +  +L+
Sbjct: 159 -ALQSRC-TRFRFGPLSSDMMIPRLEHVVKEERVDISPDGMKALVTLSNGDMRRSLNILQ 216


>gi|150016211|ref|YP_001308465.1| sporulation protease LonB [Clostridium beijerinckii NCIMB 8052]
 gi|149902676|gb|ABR33509.1| Sporulation protease LonB [Clostridium beijerinckii NCIMB 8052]
          Length = 558

 Score = 74.0 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 66/317 (20%), Positives = 104/317 (32%), Gaps = 69/317 (21%)

Query: 3   DREGLLSRNVSQEDADISLLR-------------PRTLEEFTGQVEACSNLKVFIEAAKA 49
           +RE ++ R  ++E  +++ LR             P + +E  GQ +    LK     A  
Sbjct: 30  NREIIIDRENTKELNNLNRLRQISLSKPLTEKSRPSSFDEVIGQEKGIKALK-----AAL 84

Query: 50  RAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG---------------------- 87
                 HV+  GPPG+GKT  A++V  E   +  S                         
Sbjct: 85  CGPNPQHVIIYGPPGVGKTAAARLVLEEARKSKLSPFTEKSKFVELDATTLRFDERGIAD 144

Query: 88  --------PVIAKAGDL---------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
                   P+   AG L         A  +T      VLF+DEI  L  I    L   +E
Sbjct: 145 PLIGSVHDPIYQGAGSLGIAGIPQPKAGAVTKAHGG-VLFLDEIGELHPIELNKLLKVLE 203

Query: 131 DFQLDL----MVGEGPSARSV------KINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           D ++ L       E  +              + F LI ATTR      P      + I  
Sbjct: 204 DRKVFLDSSYYSSEDTNMPKYIKEVFDNGLPADFRLIGATTRAPHEIIPAIRSRCVEIFF 263

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
                E+++ I +      GL ++ +   E++       R    L++     A       
Sbjct: 264 RALLPEEIEKIAENCVNKVGLQISKDGVEEVSKYCTN-GREVINLIQLASGIAINEDRSE 322

Query: 241 ITREIADAALLRLAIDK 257
           IT +     L     +K
Sbjct: 323 ITLDDIKWVLENGQYNK 339


>gi|257062978|ref|YP_003142650.1| DNA polymerase III, subunit gamma/tau [Slackia heliotrinireducens
           DSM 20476]
 gi|256790631|gb|ACV21301.1| DNA polymerase III, subunit gamma/tau [Slackia heliotrinireducens
           DSM 20476]
          Length = 807

 Score = 74.0 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 54/259 (20%), Positives = 99/259 (38%), Gaps = 28/259 (10%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVV 74
           +A     RP+T ++  GQ      LK  ++      + + H  LF GP G GKTT+A+++
Sbjct: 3   EALYRKYRPQTFDDVVGQTHVERTLKNALQ-----QDHVSHAYLFCGPRGTGKTTMARLL 57

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL--SIIVEEIL----YPA 128
           A+ L      T  P      +   L+      DV  +D   R     + EEI+    +  
Sbjct: 58  AKALLCEHGPTPSP--DGTCEECQLIAEGAHPDVNELDAASRTGVDNVREEIIGRVQFAP 115

Query: 129 MEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
                   ++ E             ++++   +    +  TT    +   +  R      
Sbjct: 116 TRGRYKIYIIDEVHMLTVPAFNALLKTLEEPPAHVVFVMCTTDPQKIPETILSRCQ-RFD 174

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
            +    E++ + +        +    EA   IA R++G  R A   L ++  F     A 
Sbjct: 175 FHRLSNEEIVSRLGAVCMAEDVPFEGEALDLIARRAQGGMRDALTALEQLIAF----GAG 230

Query: 240 TITREIADAALLRLAIDKM 258
            +T ++A+AAL  L ++ M
Sbjct: 231 NVTMDVANAALGSLDVNDM 249


>gi|329923475|ref|ZP_08278956.1| ATP-dependent protease LonB [Paenibacillus sp. HGF5]
 gi|328941275|gb|EGG37570.1| ATP-dependent protease LonB [Paenibacillus sp. HGF5]
          Length = 576

 Score = 74.0 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 58/281 (20%), Positives = 92/281 (32%), Gaps = 56/281 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                 RP+T+++  GQ +    LK  + +A  +     HV+  GPPG+GKT  A+VV  
Sbjct: 58  PLAEKTRPQTMDDIVGQKDGLRALKAALCSANPQ-----HVIVYGPPGVGKTAAARVVME 112

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR------------------------------ 106
           E   N +S      AK  ++ A     ++R                              
Sbjct: 113 EAKKNPQSPFKY-DAKFTEIDATTARFDERGIADPLIGSVHDPIYQGAGAMGVAGIPQPK 171

Query: 107 ---------DVLFIDEIHRLSIIVEEILYPAMEDFQLDL------MVGEGPSARSVKI-- 149
                     +LFIDEI  L  I    L   +ED ++ L             A    I  
Sbjct: 172 PGAVTKAHGGILFIDEIGELHPIQMNKLLKVLEDRKVLLESAYYNSEDANTPAYIHDIFQ 231

Query: 150 --NLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEA 207
               + F L+ ATTR      P      + I       E++  I +   +  GL      
Sbjct: 232 NGLPADFRLVGATTRSPEEIAPALRSRCMEIFFRPLLPEEIGKIAEDAIQKIGLN-APPE 290

Query: 208 ACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           A E+  +     R A  +++     A       +     + 
Sbjct: 291 AVEVVKQYCSNGREAVNMIQLAAGLALTEKRDALRAADVEW 331


>gi|325105012|ref|YP_004274666.1| DNA polymerase III, subunits gamma and tau [Pedobacter saltans DSM
           12145]
 gi|324973860|gb|ADY52844.1| DNA polymerase III, subunits gamma and tau [Pedobacter saltans DSM
           12145]
          Length = 605

 Score = 74.0 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 85/246 (34%), Gaps = 54/246 (21%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T E   GQ+   + LK  I++ +         LF GP G+GKTT A+++A+ +
Sbjct: 8   ARKYRPVTFESVVGQLHITNTLKNAIKSNQLAQA----FLFCGPRGVGKTTCARILAKTI 63

Query: 79  GVNFRSTSGPV-------------------------IAKAGDLAALLTNL------EDRD 107
                +  G                                D+  L+  +          
Sbjct: 64  NCQNLTAQGEACGICESCNSFLHGNSFNFHELDAASNNSVDDIRNLIDQVRIPPQGGKYK 123

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           V  IDE+H LS          +E+          P A ++ I         ATT    + 
Sbjct: 124 VYIIDEVHMLSQSAFNAFLKTLEE----------PPAYAIFIL--------ATTEKHKIL 165

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             +  R  I    N  ++ED+   + + A    +   ++    IA ++ G  R A  +  
Sbjct: 166 PTILSRCQI-FDFNRIKVEDMAGHLSKIATREEITFDNDGLHLIAQKADGGLRDALSMFD 224

Query: 228 RVRDFA 233
           ++  F+
Sbjct: 225 QIASFS 230


>gi|307717514|gb|ADN88810.1| recombination factor protein [Listeria innocua]
 gi|307717516|gb|ADN88811.1| recombination factor protein [Listeria innocua]
 gi|307717522|gb|ADN88814.1| recombination factor protein [Listeria innocua]
 gi|307717538|gb|ADN88822.1| recombination factor protein [Listeria innocua]
 gi|307717552|gb|ADN88829.1| recombination factor protein [Listeria innocua]
          Length = 191

 Score = 74.0 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 46/202 (22%), Positives = 81/202 (40%), Gaps = 17/202 (8%)

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           G+GKT++A  +A      FR+ +     K   ++ A    +    +L +DE+HRL    +
Sbjct: 1   GIGKTSIASAIAGSTKYAFRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQ 60

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           + L P +E   + +++G   S   + IN +    I + T++  L     +   I +    
Sbjct: 61  DFLLPLLESGAI-ILIGATTSNPYIAINPA----IRSRTQIFELKPLTVEDIMITMDRAL 115

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT-- 240
            + E       RG     + + + A    A  S G  R A   L      +E        
Sbjct: 116 LDKE-------RGLGNYEVEIDEFAKKHFATASNGDVRSALNALELAVISSEPNEDGIIH 168

Query: 241 ITREIADAALLRL--AIDKMGF 260
           IT ++A+  L +   A DK G 
Sbjct: 169 ITLDVAEECLQKKSLAHDKDGD 190


>gi|253577375|ref|ZP_04854692.1| DNA polymerase III [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843275|gb|EES71306.1| DNA polymerase III [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 589

 Score = 74.0 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 85/228 (37%), Gaps = 27/228 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP++ ++  GQ      L+  I     R + L H  LF GP G GKT+ A+++A+ +   
Sbjct: 11  RPQSFQDMVGQQHIIRTLQNAI-----REQRLSHAYLFSGPRGTGKTSAAKILAKAVNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLED--RDVLFID-----EIHRLSIIVEEILYPAMEDFQL 134
                GP      +  A          DVL ID      +  +  + E++ Y   E  Q 
Sbjct: 66  K----GPAAEPCNECDACRRITAGAVMDVLEIDAASNRGVEEIRDLREKVKYAPTEVRQK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             ++ E             ++++        I ATT    L   +  R           +
Sbjct: 122 VYIIDEVHMLTTEAFNALLKTLEEPPPHVMFILATTEPHRLPATVISRCQ-RFDFRRVSL 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
           E+    ++   +  G+    EA   IA  S G  R A  +L ++  F+
Sbjct: 181 EEQSERLRMICEQEGIEAEKEAIEYIARLSDGGMRDALSILDQIASFS 228


>gi|167038707|ref|YP_001661692.1| DNA polymerase III subunits gamma and tau [Thermoanaerobacter sp.
           X514]
 gi|300913734|ref|ZP_07131051.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter sp.
           X561]
 gi|307723250|ref|YP_003903001.1| DNA polymerase III subunits gamma and tau [Thermoanaerobacter sp.
           X513]
 gi|166852947|gb|ABY91356.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter sp.
           X514]
 gi|300890419|gb|EFK85564.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter sp.
           X561]
 gi|307580311|gb|ADN53710.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter sp.
           X513]
          Length = 518

 Score = 74.0 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 50/263 (19%), Positives = 93/263 (35%), Gaps = 27/263 (10%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
              RP++ +E  GQ      LK  I+  K         LF G  G GKT++A++ A+ + 
Sbjct: 7   RKYRPKSFKEVVGQEHIVKTLKNQIKLNKIGHAY----LFTGTRGTGKTSVAKIFAKAVN 62

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII-----VEEILYPAMEDFQL 134
               +   P  +   ++   + N    DVL ID     S+       E ++Y   +    
Sbjct: 63  CLNNTDGEPCNSC--EICQAINNNTTMDVLEIDAASNNSVNDVRELRESVIYAPSQAKYK 120

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             ++ E             ++++        I ATT    L + +  R            
Sbjct: 121 VYIIDEVHMLSTGAFNALLKTLEEPPPHVIFILATTEPDKLPDTILSRCQRFDFKRIPTR 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
             +   + R    +G+ + ++    IA+   G+ R A  LL +   + E      IT E 
Sbjct: 181 -LIAQNLDRICNDSGIKIEEKGLKTIAIYGNGSMRDAISLLEQCASYKE----GLITYED 235

Query: 246 ADAALLRLAIDKMG--FDQLDLR 266
               L     + +    D ++ +
Sbjct: 236 VCEMLGVANDEVLFSLLDYMNAK 258


>gi|291297392|ref|YP_003508790.1| DNA polymerase III subunits gamma and tau [Meiothermus ruber DSM
           1279]
 gi|290472351|gb|ADD29770.1| DNA polymerase III, subunits gamma and tau [Meiothermus ruber DSM
           1279]
          Length = 641

 Score = 74.0 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 82/242 (33%), Gaps = 28/242 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP T +E  GQ      L   + + +         LF GP G+GKT+ A+++A+ +  + 
Sbjct: 9   RPTTFDEMVGQEHVKEVLLNALRSGRLAQAY----LFSGPRGVGKTSSARLIAQAVNCSS 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII-----VEEILYPAMEDFQLDLM 137
                           L+      DVL ID     S+       E IL   +      ++
Sbjct: 65  DPRPCGTCEGC----RLVREGRHPDVLEIDAASNNSVEDVRELRERILLSPILSQHKVVI 120

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT    +   +  R          E E +
Sbjct: 121 LDEAHMMSKSAFNALLKTLEEPPPHVIFIFATTEPERMPPTILSRTQHFRFRRLSEAEIV 180

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  +QR     G      A   +A  + G  R A  LL R+           +T +  + 
Sbjct: 181 EK-LQRILAGLGREAEPPALQLVARLADGAMRDAESLLDRLLTL-----EGPLTLKQTED 234

Query: 249 AL 250
           AL
Sbjct: 235 AL 236


>gi|206602072|gb|EDZ38554.1| Probable ATPase, AAA family [Leptospirillum sp. Group II '5-way
           CG']
          Length = 444

 Score = 74.0 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 69/336 (20%), Positives = 115/336 (34%), Gaps = 49/336 (14%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
             + +    SLL P   EEF GQ        +       R+     ++  GPPG GK+  
Sbjct: 6   EPASQKPLCSLLFPDRPEEFLGQPHLMGEGGILRRLIAVRS--FRSMVIHGPPGCGKSAF 63

Query: 71  AQVVARELGVNFRST-----SGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
             ++ + L  +F        SG  + KA D            +L I+EI R +   +++L
Sbjct: 64  VHLLQKVLPFHFEVVRAGEASGGDLKKAMDRGVSYRQSGQDCLLVIEEIDRFTRTQQDVL 123

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
            PA+E   L L+        S    L       ++  +     PL               
Sbjct: 124 VPALERGDLLLL------GLSFDNPLRTLLPPLSSRLLLFSFQPL-------------SP 164

Query: 186 EDLKTIVQRGAKLT------GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           EDL T+++RG +         ++++ EAA  +  RS G  R    L   +    +     
Sbjct: 165 EDLLTLLERGRQFLEKRDRSPVSISPEAASLLVRRSGGDGRKLLLLFEALVISRKDHGEG 224

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           T  +          A     F   +  Y               + ISA +   R+   D 
Sbjct: 225 TGVQIGLSEVHGMEAGSGGIFYDKEQHY---------------DLISAFIKSIRNHDPDS 269

Query: 300 IEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
              Y+ +       P    R L+ +A + +G+  PH
Sbjct: 270 SIHYLARMIESGEDPVFISRRLVILAAEDIGLANPH 305


>gi|15606894|ref|NP_214275.1| DNA polymerase III gamma subunit [Aquifex aeolicus VF5]
 gi|2984127|gb|AAC07663.1| DNA polymerase III gamma subunit [Aquifex aeolicus VF5]
          Length = 473

 Score = 74.0 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 52/262 (19%), Positives = 83/262 (31%), Gaps = 57/262 (21%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+   E  GQ      LK  I+  +         LF GP G+GKTT+A+++A+ L
Sbjct: 7   ARKYRPKFFREVIGQEAPVRILKNAIKNDRVAHAY----LFAGPRGVGKTTIARILAKAL 62

Query: 79  GVNFRS------------------------TSGPVIAKAGDLAALLTNLEDRDV------ 108
                S                                  D+ AL   +  + +      
Sbjct: 63  NCKNPSKGEPCGECENCREIDRGVFPDLIEMDAASNRGIDDVRALKEAVNYKPIKGKYKV 122

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
             IDE H L+      L   +E+                     R   +  TT    +  
Sbjct: 123 YIIDEAHMLTKEAFNALLKTLEE------------------PPPRTVFVLCTTEYDKILP 164

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            +  R    I       E +   +++  +  G+   + A   +A  S G  R A  LL  
Sbjct: 165 TILSRCQRIIFSKV-RKEKVIEYLKKICEKEGIECEEGALEVLAHASEGCMRDAASLL-- 221

Query: 229 VRDFAEVAHAKTITREIADAAL 250
             D A V     +T+E+ +  L
Sbjct: 222 --DQASVYGEGRVTKEVVENFL 241


>gi|319936700|ref|ZP_08011113.1| DNA polymerase III [Coprobacillus sp. 29_1]
 gi|319808257|gb|EFW04822.1| DNA polymerase III [Coprobacillus sp. 29_1]
          Length = 619

 Score = 74.0 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 82/227 (36%), Gaps = 29/227 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  +E  GQ    + L+  +E  K         LF GP G GKTT+A+++A+ +    
Sbjct: 11  RPQRFDEVAGQEHIITTLRHAVEENKIAHAY----LFCGPRGTGKTTIAKLLAKAINCTG 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                       ++A    +    DV+ ID      +  +  +++++ Y   +      +
Sbjct: 67  NPKPCDECENCKEIA----SGNHPDVIEIDAASNNGVDEVRNLIDKVKYAPTQGKYKVYI 122

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++   +    I ATT    +   +  R      +       L
Sbjct: 123 IDEVHMMSTGAFNALLKTLEEPPAHVVFILATTEPHKILPTIISRCQRFDFMKL----SL 178

Query: 189 KTIVQR---GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
             IV R     +       DEA   IA  + G  R A  +L +   +
Sbjct: 179 TEIVNRMKSVVEQENYICDDEALEMIAKLADGGMRDALSILEQCLAY 225


>gi|295706775|ref|YP_003599850.1| ATP-dependent protease LonB [Bacillus megaterium DSM 319]
 gi|294804434|gb|ADF41500.1| ATP-dependent protease LonB [Bacillus megaterium DSM 319]
          Length = 555

 Score = 74.0 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 49/251 (19%), Positives = 86/251 (34%), Gaps = 55/251 (21%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +     +RP +  +  GQ +   +LK     A        HV+  GPPG+GKT  A++V 
Sbjct: 57  EPLAERVRPSSFSDIVGQEDGIRSLK-----AALCGPNPQHVIVYGPPGVGKTAAARLVL 111

Query: 76  RELGVNFRSTSG----------------------PVIAKAGD-----------------L 96
            E   N +S                         P+I    D                  
Sbjct: 112 EEAKKNKKSPFKQSAVFVELDATTARFDERGIADPLIGSVHDPIYQGAGAMGQAGIPQPK 171

Query: 97  AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL----DLMVGEGPSARSVKINL- 151
              +T+     +LFIDEI  L  I    L   +ED ++         E     +   ++ 
Sbjct: 172 QGAVTDAHGG-ILFIDEIGELHPIQMNKLLKVLEDRKVFMESAYYSEENTQIPTHIHDIF 230

Query: 152 -----SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDE 206
                + F LI ATTR      P      + +     + +++ T+ ++ A    + +++E
Sbjct: 231 QNGLPADFRLIGATTRTPNEIPPAIRSRCVEVFFRELDRDEIITVAKKAANKVRMDISEE 290

Query: 207 AACEIAMRSRG 217
                +  +R 
Sbjct: 291 GLSLFSTYARN 301


>gi|281425324|ref|ZP_06256237.1| hypothetical protein HMPREF0971_02296 [Prevotella oris F0302]
 gi|281400617|gb|EFB31448.1| DNA polymerase III, gamma and tau subunits [Prevotella oris F0302]
          Length = 599

 Score = 74.0 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 44/254 (17%), Positives = 86/254 (33%), Gaps = 24/254 (9%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T +   GQ    + LK  +++ K         LF GP G+GKTT A++ A+ +
Sbjct: 8   ARKYRPMTFDAVVGQHALTTTLKNAVKSGKLAHAY----LFCGPRGVGKTTCARIFAKAI 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI------IVEEILYPAMEDF 132
                   G          A        ++  +D     S+      + +  + P +  +
Sbjct: 64  NCEHPGEDGEACNACESCKA-FNEQRSYNIFELDAASNNSVENIKALMEQTRIPPQVGRY 122

Query: 133 QLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           ++ ++               ++++   +    I ATT    +   +  R  I        
Sbjct: 123 KVFIIDEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQIYDFERM-T 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           + +    ++  A    +   +EA   IA ++ G  R A  +  +   F +      IT +
Sbjct: 182 VGNTIEHLKLVAAKESITYDEEALAVIAEKADGGMRDALSIFDQAASFCQ----GNITYQ 237

Query: 245 IADAALLRLAIDKM 258
                L  L  D  
Sbjct: 238 KVIEDLNVLDSDNY 251


>gi|332981498|ref|YP_004462939.1| Sigma 54 interacting domain-containing protein [Mahella
           australiensis 50-1 BON]
 gi|332699176|gb|AEE96117.1| Sigma 54 interacting domain protein [Mahella australiensis 50-1
           BON]
          Length = 563

 Score = 74.0 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 65/307 (21%), Positives = 104/307 (33%), Gaps = 68/307 (22%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           RE  L++ +S++       RP + ++  GQ E    LK     A        HVL  GPP
Sbjct: 49  RERSLTQPLSEKT------RPASFDDIIGQEEGIKALK-----AALCGPNPQHVLIYGPP 97

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRD---------------- 107
           G+GKT  A++V  E   N  S      AK  ++ A     ++R                 
Sbjct: 98  GVGKTAAARLVLEEAKKNSYSPFKK-DAKFVEMDATSMRFDERSIADPLIGSVHDPIYQG 156

Query: 108 -----------------------VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSA 144
                                  +LF+DEI  L  I    L   +ED ++     E    
Sbjct: 157 AGPLGIAGIPQPKPGAVTKAHGGILFLDEIGELHPIQMNKLLKVLEDRKVFF---ESAYY 213

Query: 145 RSVKINLSR-------------FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
            S   N+ R             F L+ ATTR      P      + I       +++  I
Sbjct: 214 SSEDTNIPRHIHDIFQNGLPADFRLVGATTRSPDEIPPAIRSRCLEIFFRALLPDEIVRI 273

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
            +  A   G A+ ++A+  I   +    R A  +++     A +   K IT    +  + 
Sbjct: 274 ARNAADKAGFAIDEDASQLIGKYATN-GREAVNIIQLAAGIAFIDGKKDITVNDIEWVIE 332

Query: 252 RLAIDKM 258
               +  
Sbjct: 333 SGHYNPR 339


>gi|168183699|ref|ZP_02618363.1| ATP-dependent protease [Clostridium botulinum Bf]
 gi|237797078|ref|YP_002864630.1| ATP-dependent protease [Clostridium botulinum Ba4 str. 657]
 gi|182673246|gb|EDT85207.1| ATP-dependent protease [Clostridium botulinum Bf]
 gi|229261211|gb|ACQ52244.1| ATP-dependent protease [Clostridium botulinum Ba4 str. 657]
          Length = 639

 Score = 74.0 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 56/281 (19%), Positives = 96/281 (34%), Gaps = 57/281 (20%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG- 79
           LLRP +  E  GQ     +L      +K  +    H++  GPPG+GKT+ A++   E+  
Sbjct: 172 LLRPASFLEIIGQERPIKSL-----LSKIASPYPQHIILYGPPGVGKTSAARLALEEVKK 226

Query: 80  ---------------------VNFRSTSGPVIAKA---------GDLAA---------LL 100
                                 + R  + P++             DLA          L+
Sbjct: 227 LKYTPFYKDSKFVEVDGTTLRWDPREITNPLLGSVHDPIYQGSKRDLAETGIPEPKLGLV 286

Query: 101 TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV------GEGPSARSVKIN---- 150
           T      VLFIDEI  L  +++  L   +ED +++          E        +     
Sbjct: 287 TEAHGG-VLFIDEIGELDDMLQNKLLKVLEDKRVEFSSSYYDPDDENTPKYIKHLFENGA 345

Query: 151 LSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACE 210
            + F LI ATTR     NP        +       +D++ IV   +    + + D    +
Sbjct: 346 PADFVLIGATTREPSEINPALRSRCAEVFFEPLSSKDIEKIVINASDKLNVILED-GVAQ 404

Query: 211 IAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
              R     R A  +L  V  ++   + +       +  + 
Sbjct: 405 TISRYTIEGRKAVNILSDVYGYSLYKNKEYKEGTKLNITMD 445


>gi|134046237|ref|YP_001097722.1| replication factor C small subunit [Methanococcus maripaludis C5]
 gi|166225155|sp|A4FZ74|RFCS_METM5 RecName: Full=Replication factor C small subunit; Short=RFC small
           subunit; AltName: Full=Clamp loader small subunit
 gi|132663862|gb|ABO35508.1| replication factor C small subunit [Methanococcus maripaludis C5]
          Length = 315

 Score = 74.0 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 52/240 (21%), Positives = 88/240 (36%), Gaps = 37/240 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP TL E  G  E    L  ++E      +++ H+LF G PG+GKTT A  +A+
Sbjct: 4   PWVEKYRPETLPEVVGHHEIIKRLTNYVE-----KKSMPHLLFSGSPGVGKTTAALALAK 58

Query: 77  ------------ELGVNFRSTSGPVIAKAGDLAALLT-NLEDRDVLFIDEIHRLSIIVEE 123
                       EL  +       +  K  D A           V+F+DE   L+   + 
Sbjct: 59  DLYGETWRENFLELNSSDERGIDVIRTKVKDFARTKPIGDAPFKVIFLDESDALTSDAQN 118

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
            L   ME +                 ++ RF  I +      +  P+Q R  I  R +  
Sbjct: 119 ALRRTMEKYS----------------DICRF--ILSCNYPSKIIPPIQSRCAI-FRFSPL 159

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           + EDL   ++  ++   L +       I   S G  R A  +L+     ++    + + +
Sbjct: 160 KTEDLVENLKDISEKETLTLEKGGIDAIIYVSEGDMRKAINVLQTAAAVSDTVTEEIVYK 219


>gi|307717506|gb|ADN88806.1| recombination factor protein [Listeria marthii]
          Length = 191

 Score = 74.0 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 45/202 (22%), Positives = 82/202 (40%), Gaps = 17/202 (8%)

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           G+GKT++A  +A      FR+ +     K   ++ A    +    +L +DE+HRL    +
Sbjct: 1   GIGKTSIASAIAGSTKYAFRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQ 60

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           + L P +E   + +++G   S   + IN +    I + T++  L     +   I      
Sbjct: 61  DFLLPLLESGAI-ILIGATTSNPYIAINPA----IRSRTQIFELKPLTVEDIMI------ 109

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT-- 240
             ++   +  +RG     + + + A    A  S G  R A   L      +E        
Sbjct: 110 -TMDRALSDKERGLGDYHVEIDEVAKKHFATASNGDVRSALNALELAVISSEPNDDGVIR 168

Query: 241 ITREIADAALLRL--AIDKMGF 260
           IT ++A+  L +   A DK G 
Sbjct: 169 ITLDVAEECLQKKSLAHDKDGD 190


>gi|119513249|ref|ZP_01632292.1| AAA ATPase, central region [Nodularia spumigena CCY9414]
 gi|119462090|gb|EAW43084.1| AAA ATPase, central region [Nodularia spumigena CCY9414]
          Length = 650

 Score = 74.0 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 53/277 (19%), Positives = 93/277 (33%), Gaps = 27/277 (9%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +      RP++  E  GQ    + L   I  AK         LF GP G GKT+ A+++A
Sbjct: 4   EPLHHKYRPKSFAELVGQEAIATTLTNAIRTAKIA----PAYLFTGPRGTGKTSSARILA 59

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAME 130
           + L                D+   +T     DV+ ID      +  +  ++E+  +  ++
Sbjct: 60  KSLNCLNSDQPTAEPCGVCDVCQGITKGYSLDVIEIDAASNTGVDNIRELIEKAQFAPVQ 119

Query: 131 DFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
                 +V E             ++++        + ATT    +   +  R        
Sbjct: 120 CRYKVYVVDECHMLSTAAFNALLKTLEEPPKHVVFVLATTDPQRVLPTIISRCQ-RFDFR 178

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR-DFAEVAHAKT 240
             ++E +   +   A    + +T +A   I   ++G  R A  LL ++     EV   K 
Sbjct: 179 RIQLEAMVNHLSAIASKENINITSDAVTLIGQIAQGGLRDAESLLDQLALTVGEVTPDKV 238

Query: 241 IT-----REIADAALLRLAIDKMGFDQLD--LRYLTM 270
                   E    ALL           LD   + L  
Sbjct: 239 WDLVGSVSEQDLIALLNAIAQNRAEGVLDCSRKILDS 275


>gi|147668860|ref|YP_001213678.1| ATPase [Dehalococcoides sp. BAV1]
 gi|146269808|gb|ABQ16800.1| ATPase associated with various cellular activities, AAA_5
           [Dehalococcoides sp. BAV1]
          Length = 307

 Score = 74.0 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 59/235 (25%), Positives = 98/235 (41%), Gaps = 16/235 (6%)

Query: 10  RNVSQEDADISLLRPRT--LEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           +  + E    SL+ P      +  G  +  + LK     A   +E   HV+  GPP L K
Sbjct: 77  QEATTESQLESLVNPDDDLFTDIIGHEDVKALLK-----AILLSEKPVHVMLTGPPALAK 131

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127
           T     + +  G       G   +KAG L  L+   E + +L IDE+ +++ +    L  
Sbjct: 132 TLFLWDIEQTFGEQAIWLVGSATSKAG-LWDLVAEREPK-ILLIDEMDKMNAVDMAALLT 189

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
            ME  +L  +       R + IN +   +IAA+ R+  L+  L+ RF I     +   E 
Sbjct: 190 MMEGGRLVRV----KRGRELDIN-NPLKVIAASNRLEKLSPELRSRFAIRKLNPYSRSEF 244

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           L   V +G  +    + ++ A EIA +  G  +     +R  R   +V   K I+
Sbjct: 245 LT--VVKGVLVRKEGLPNDLAEEIARKLDGQSQDVRDAIRIARLAPQVGVDKAIS 297


>gi|229019696|ref|ZP_04176503.1| ATP-dependent protease La [Bacillus cereus AH1273]
 gi|229025935|ref|ZP_04182327.1| ATP-dependent protease La [Bacillus cereus AH1272]
 gi|228735381|gb|EEL85984.1| ATP-dependent protease La [Bacillus cereus AH1272]
 gi|228741603|gb|EEL91796.1| ATP-dependent protease La [Bacillus cereus AH1273]
          Length = 556

 Score = 74.0 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 59/288 (20%), Positives = 96/288 (33%), Gaps = 56/288 (19%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           R VS  +     +RP +  +  GQ +   +LK     A        HV+  GPPG+GKT 
Sbjct: 51  REVSLTEPLAEKVRPTSFLDIVGQEDGIKSLK-----AALCGPNPQHVIIYGPPGVGKTA 105

Query: 70  LAQVVARELGVNFRSTS----------------------GPVIAKAGD------------ 95
            A++V  E   N +S                         P+I    D            
Sbjct: 106 AARLVLEEAKRNPKSPFRTNATFIELDATTARFDERGIADPLIGSVHDPIYQGAGAMGQA 165

Query: 96  -----LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL----MVGEGPSARS 146
                    +T+     +LFIDEI  L  I    +   +ED ++ L       E     +
Sbjct: 166 GIPQPKKGAVTDAHGG-ILFIDEIGELHPIQMNKMLKVLEDRKVFLESAYYSEENSMIPT 224

Query: 147 VKINL------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
              ++      + F L+ ATTR      P      + +     E E+++ + +  A    
Sbjct: 225 YIHDIFQKGLPADFRLVGATTRSPEEIPPAIRSRCLEVFFRELETEEIQKVAKNAADKVE 284

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           + +       I M +R   R A  L++     A       I  E  + 
Sbjct: 285 MQIGKNGIEMIGMYARN-GREAINLVQISAGMAINEERPFIKDEDIEW 331


>gi|225175198|ref|ZP_03729194.1| Sigma 54 interacting domain protein [Dethiobacter alkaliphilus AHT
           1]
 gi|225169374|gb|EEG78172.1| Sigma 54 interacting domain protein [Dethiobacter alkaliphilus AHT
           1]
          Length = 558

 Score = 74.0 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 62/295 (21%), Positives = 100/295 (33%), Gaps = 57/295 (19%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M++   + R +S  +      RP +  E  GQ E   +L+     A        HV+  G
Sbjct: 45  MEQLRRM-REISLTEPLAEKTRPASFSEIIGQEEGLKSLR-----AALCGPNPQHVIVYG 98

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDV------------- 108
           PPG+GKT +A++V  E   N  S      AK  +L A     ++R +             
Sbjct: 99  PPGVGKTAVARLVLEEAKRNSGSPFNS-DAKFVELDATTARFDERGIADPLIGSVHDPIY 157

Query: 109 --------------------------LFIDEIHRLSIIVEEILYPAMEDFQLDLMVG-EG 141
                                     LFIDEI  L       L   +ED ++ L      
Sbjct: 158 QGAGPMGMAGIPQPKPGAVSKAHGGVLFIDEIGELHPTQMNKLLKVLEDRKVFLESAYYN 217

Query: 142 PSARSVKINL---------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           P  ++V  ++         + F LI ATTR      P      + +       E++  + 
Sbjct: 218 PEDKNVPQHIHEIFQNGLPADFRLIGATTRTPEDIPPAIRSRCLEVFFRGLLPEEIGQVA 277

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
              AK     + D +A E+  +     R A   ++     A   H +     + D
Sbjct: 278 LNAAKRIEFVMED-SALEVIKKYATNGREAVNTVQIAAGIALCDHQENKHLRLQD 331


>gi|198283699|ref|YP_002220020.1| DNA polymerase III subunits gamma and tau [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218666373|ref|YP_002426328.1| DNA polymerase III, subunits gamma and tau [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|198248220|gb|ACH83813.1| DNA polymerase III, subunits gamma and tau [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218518586|gb|ACK79172.1| DNA polymerase III, subunits gamma and tau [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 572

 Score = 74.0 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 55/256 (21%), Positives = 94/256 (36%), Gaps = 29/256 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP+  ++F GQ    S L+  +++ +         LF G  G+GKTTLA+++A+
Sbjct: 6   ALARRWRPQHFDDFVGQEAVVSALRHALDSGRIHHA----FLFTGTRGVGKTTLARLLAK 61

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYP-----AM 129
            L      +S P     G+ +A  +       D+L +D   R  +     L         
Sbjct: 62  CLNCERGVSSNP----CGECSACRSIAAGNFVDLLEVDAASRTRVDETRDLLDNVQYAPT 117

Query: 130 EDFQLDLMVGEGPS--ARSVKINLS-------RFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                  ++ E     A S    L            + ATT    L   +  R  +   L
Sbjct: 118 AGRYKAYLIDEVHMLSAHSFNALLKTLEEPPEHVKFLLATTDPQKLPITVLSRC-LQFNL 176

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
              ++  ++  +++   L  +   D A   ++  + G+ R A  LL    D A V     
Sbjct: 177 RRLDVPQIQGRLRQIMSLEQVPAEDAALQILSRAADGSLRDALSLL----DQAIVHGGGA 232

Query: 241 ITREIADAALLRLAID 256
           + R+   A L R   D
Sbjct: 233 VRRDGVLAMLGRSGDD 248


>gi|256751423|ref|ZP_05492301.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|256749642|gb|EEU62668.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter
           ethanolicus CCSD1]
          Length = 518

 Score = 74.0 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 50/263 (19%), Positives = 93/263 (35%), Gaps = 27/263 (10%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
              RP++ +E  GQ      LK  I+  K         LF G  G GKT++A++ A+ + 
Sbjct: 7   RKYRPKSFKEVVGQEHIVKTLKNQIKLNKIGHAY----LFTGTRGTGKTSVAKIFAKAVN 62

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII-----VEEILYPAMEDFQL 134
               +   P  +   ++   + N    DVL ID     S+       E ++Y   +    
Sbjct: 63  CLNNTDGEPCNSC--EICQAINNNTTMDVLEIDAASNNSVNDVRELRESVIYAPSQAKYK 120

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             ++ E             ++++        I ATT    L + +  R            
Sbjct: 121 VYIIDEVHMLSTGAFNALLKTLEEPPPHVIFILATTEPDKLPDTILSRCQRFDFKRIPTR 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
             +   + R    +G+ + ++    IA+   G+ R A  LL +   + E      IT E 
Sbjct: 181 -LIAQNLDRICNDSGMKIEEKGLKTIAIYGNGSMRDAISLLEQCASYKE----GLITYED 235

Query: 246 ADAALLRLAIDKMG--FDQLDLR 266
               L     + +    D ++ +
Sbjct: 236 VCEMLGVANDEVLFSLLDYMNAK 258


>gi|198276945|ref|ZP_03209476.1| hypothetical protein BACPLE_03150 [Bacteroides plebeius DSM 17135]
 gi|198270470|gb|EDY94740.1| hypothetical protein BACPLE_03150 [Bacteroides plebeius DSM 17135]
          Length = 633

 Score = 74.0 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 46/244 (18%), Positives = 88/244 (36%), Gaps = 22/244 (9%)

Query: 5   EGLLSRNVSQEDADISL--LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           +G+  +N   E+  +S    RP T +   GQ    + LK  I   K         LF GP
Sbjct: 14  QGIKQKNRHMENYIVSARKYRPSTFDTVVGQRALTTTLKNAIANHKLAHAY----LFCGP 69

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII-- 120
            G+GKTT A++ A+ +     ++ G    +     A        ++  +D     S+   
Sbjct: 70  RGVGKTTCARIFAKTINCLHPTSEGEACNECESCKA-FNEQRSYNIHELDAASNNSVEDI 128

Query: 121 ----VEEILYPAMEDFQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
                +  + P +  +++ ++               ++++        I ATT    +  
Sbjct: 129 RSLIEQVRIPPQIGKYKVYIIDEVHMLSTAAFNAFLKTLEEPPQHAIFILATTEKHKILP 188

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            +  R  I        + D    ++  A+   +    EA   IA ++ G  R A  +  +
Sbjct: 189 TILSRCQIYDFSRI-TVNDTVEHLENVARKEHIEAEPEALNVIAQKADGGMRDALSIFDQ 247

Query: 229 VRDF 232
           V  F
Sbjct: 248 VVSF 251


>gi|68490447|ref|XP_710951.1| hypothetical protein CaO19.3211 [Candida albicans SC5314]
 gi|46432214|gb|EAK91709.1| hypothetical protein CaO19.3211 [Candida albicans SC5314]
 gi|238882781|gb|EEQ46419.1| activator 1 40 kDa subunit [Candida albicans WO-1]
          Length = 361

 Score = 74.0 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 43/251 (17%), Positives = 78/251 (31%), Gaps = 16/251 (6%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE- 77
           +   RP +LEE  GQ E    ++ F+E  K     L H+LF GP G GKT+    +A+E 
Sbjct: 26  VEKYRPDSLEEVKGQQEIVDTVRKFVETGK-----LPHLLFYGPSGTGKTSTIIALAKEI 80

Query: 78  -----LGVNFRSTSGPVIAKAGDLAALLTN-LEDRDVLFIDEIHRLSIIVEEILYPAMED 131
                        +         +   + N    R +   +     S          +++
Sbjct: 81  YGATNYKNMILELNASDDRGIDVVRNQIKNFASTRQIFTKNTSQTASNNQ--FKLIILDE 138

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
                 V +    R ++                 L   L  R     R    +I  +K  
Sbjct: 139 ADAMTNVAQNSLRRVIEKFTKNCRFCILANYSHKLNPALISRC-TRFRFTPIDISAIKDR 197

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           +        + ++ EA   +   S G  R A  +L+  +        +       +  + 
Sbjct: 198 LNTVIIKENVNISPEAIDALLKLSNGDMRRALNVLQSCKAALGDEEKEEDGHANDEIDVD 257

Query: 252 RLAIDKMGFDQ 262
            +  D +G   
Sbjct: 258 MI-YDCVGAPH 267


>gi|15612597|ref|NP_240900.1| DNA polymerase III gamma and tau subunits [Bacillus halodurans
           C-125]
 gi|10172646|dbj|BAB03753.1| DNA polymerase III gamma and tau subunits [Bacillus halodurans
           C-125]
          Length = 564

 Score = 74.0 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 58/303 (19%), Positives = 103/303 (33%), Gaps = 46/303 (15%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+ L++  GQ      L+  +       E   H  LF GP G GKT+ A+++A+ +   
Sbjct: 11  RPQKLQDVVGQEHITKTLQNAL-----VQEKFSHAYLFSGPRGTGKTSAAKIIAKAINCE 65

Query: 82  FRSTSGPVIAKAGDLAAL--LTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQL 134
                 P+     +  A   +T+    DV+ ID      +  +  I + + +   E    
Sbjct: 66  ----QAPIAEPCNECRACKGITSGSIVDVMEIDAASNNGVDEIRDIRDHVKFAPSEVRYK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             ++ E             ++++   S    I ATT    +   +  R            
Sbjct: 122 VYIIDEVHMLTTGAFNALLKTLEEPPSHAIFILATTEPHKIPLTIISRCQ-RFDFKRISN 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           + L   ++      G+   DEA   +A  + G  R +  LL +   FA+          I
Sbjct: 181 DALVGRMKEILTHEGIEAEDEALVLVARAAEGGMRDSLSLLDQAISFADERVTVEDVLAI 240

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVG-----IETISAGLSEPRDAIEDLI 300
             A              +    LT +  +   G        +  + A   +P   +EDLI
Sbjct: 241 TGA--------------VSHEVLTQVVESAQKGETAEALQLVNQLLANGKDPLRFVEDLI 286

Query: 301 EPY 303
             Y
Sbjct: 287 YYY 289


>gi|289523191|ref|ZP_06440045.1| DNA polymerase III, gamma and tau subunit [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503734|gb|EFD24898.1| DNA polymerase III, gamma and tau subunit [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 557

 Score = 74.0 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 51/231 (22%), Positives = 84/231 (36%), Gaps = 21/231 (9%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
              RP    +  GQ      LK  + + K         LF GP G GKTT+A++VA+ L 
Sbjct: 7   RKYRPGRFSDVVGQDGIVKILKHSLRSKKIGHA----FLFSGPRGCGKTTVARIVAKALN 62

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL-----YPAMEDFQL 134
                   P  +   ++   ++  E  DV+ ID      I     L       +      
Sbjct: 63  CPDAREGEPCDSC--EVCKTISRGESLDVIEIDGASNRGIEEIRNLKSQIGLASFSLPYK 120

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             ++ E             ++++    R   I ATT    +   ++ R  +    N    
Sbjct: 121 VYIIDEVHMLTDAAFNALLKTLEEPPQRVVFILATTAPEKVPLTIRSRC-LRFYFNRLSS 179

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
            D+   + R A+  G    +EA  E+A ++ G+ R A  LL +     E A
Sbjct: 180 VDIVNRLCRVAQEEGFDYEEEALWELARQADGSLRDALTLLEQALSLEEKA 230


>gi|254172798|ref|ZP_04879472.1| replication factor C large subunit [Thermococcus sp. AM4]
 gi|214032954|gb|EEB73782.1| replication factor C large subunit [Thermococcus sp. AM4]
          Length = 498

 Score = 74.0 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 77/223 (34%), Gaps = 29/223 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH-VLFVGPPGLGKTTLAQVVA 75
             +   RPR L E   Q +A   ++ +IEA           ++  GPPG+GKTT    +A
Sbjct: 4   PWVEKYRPRKLSEIVNQEKAIEQVRAWIEAWLHGNPPKKKALILAGPPGVGKTTTVYALA 63

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPA 128
            E G      +         +   +          + R ++F+DE   +           
Sbjct: 64  NEYGFEVIELNASDERTYEKIERYVQAAYTMDILGKRRKLIFLDEADNIEPS-------- 115

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
                     G    A+ +    +   + A       +   +++R  I       + + +
Sbjct: 116 ----------GAREIAKLIDRAKNPIIMSA--NHYWEVPREIRNRALIVQYKRLTQRDII 163

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
           K +V R  K  G  V  E   EIA R+ G  R A   L+ V  
Sbjct: 164 KALV-RILKREGKTVPKEILYEIARRANGDLRAAINDLQTVVT 205


>gi|188585730|ref|YP_001917275.1| ATP-dependent protease LonB [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179350417|gb|ACB84687.1| ATP-dependent protease LonB [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 537

 Score = 74.0 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 70/348 (20%), Positives = 118/348 (33%), Gaps = 70/348 (20%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M++   + R +S  +      RP+  +E  GQ E    L+     A        HV+  G
Sbjct: 45  MEKLRKMRR-ISLAEPLAEKTRPQKFQEIVGQKEGLKALR-----AALCGPNPQHVIIYG 98

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDV------------- 108
           PPG+GKT  A+VV  E   N RS  G   ++  ++ +     ++R +             
Sbjct: 99  PPGIGKTAAARVVLEEAKNNPRSPFGE-HSEFVEIDSTTARFDERGIADPLIGTVHDPIY 157

Query: 109 --------------------------LFIDEIHRLSIIVEEILYPAMEDFQLDL----MV 138
                                     LF+DEI  L  I    L   +ED ++ L      
Sbjct: 158 QGAGAMGIHGIPQPKPGAVSKAHGGVLFLDEIGELHHIQMNKLLKVLEDRKVFLESSYYS 217

Query: 139 GEGPSARSV------KINLSRFTLIAATTR-VGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
            E P+          K   + F LI ATT+    +   ++ R  + +       E+L  I
Sbjct: 218 SEDPNCPQYIHEIFQKGLPADFRLIGATTKGPESIPEAIRSRC-VEVFFKGLTPEELVGI 276

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
            +   K  G    ++ A EI  +     R A  L++     A+      +T++  +  + 
Sbjct: 277 AKHAVKRLGFE-VEQGAIEIIKKYAENGREAVNLIQIAAGLAQTEKRSNLTQKDLEWVIN 335

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
              I        D               VG+    A L   R  + ++
Sbjct: 336 TSQISPR----PDKLI-------PARSQVGLANALAVLGPSRGTLLEI 372


>gi|28198956|ref|NP_779270.1| DNA polymerase III subunits gamma and tau [Xylella fastidiosa
           Temecula1]
 gi|182681665|ref|YP_001829825.1| DNA polymerase III subunits gamma and tau [Xylella fastidiosa M23]
 gi|28057054|gb|AAO28919.1| DNA polymerase III subunits gamma and tau [Xylella fastidiosa
           Temecula1]
 gi|182631775|gb|ACB92551.1| DNA polymerase III, subunits gamma and tau [Xylella fastidiosa M23]
 gi|307580101|gb|ADN64070.1| DNA polymerase III subunits gamma and tau [Xylella fastidiosa
           subsp. fastidiosa GB514]
          Length = 543

 Score = 74.0 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 56/309 (18%), Positives = 97/309 (31%), Gaps = 72/309 (23%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH-VLFVGPPGLGKTTLAQVVARELGVN 81
           RP+   E  GQ      L   +E+ +     L H  LF G  G+GKTT+A++ A+ L   
Sbjct: 11  RPKRFAELVGQEHVVRALSNALESGR-----LHHAFLFTGTRGVGKTTIARIFAKSLNCE 65

Query: 82  ------------------------FRSTSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                                D+  ++ N +         V  I
Sbjct: 66  QGTSADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVREMIENAQYMPSRGKFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSKAAFNALLKTLEE------------------PPPHVKFLLATTDPQKLPVTVL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L   + E ++  + +      +   D A  E++  + G+ R    LL +   
Sbjct: 168 SRC-LQFNLKRLDEEQIQRQIAKILTAEQITADDTAIIELSKAADGSLRDGLSLLDQAIA 226

Query: 232 FAE-----------VAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV 280
           +A            +        E+  AAL+    D++      LR +  +A        
Sbjct: 227 YAGGTLREGAVRDMLGTVDRTQVEVMLAALIAGDGDRL------LRVIATLAEFSPDWGG 280

Query: 281 GIETISAGL 289
            +E ++  L
Sbjct: 281 VLEALAEAL 289


>gi|150865911|ref|XP_001385318.2| Replication factor C, subunit RFC4 [Scheffersomyces stipitis CBS
           6054]
 gi|149387167|gb|ABN67289.2| Replication factor C, subunit RFC4 [Scheffersomyces stipitis CBS
           6054]
          Length = 369

 Score = 74.0 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 77/235 (32%), Gaps = 35/235 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RPR L++   Q  A   LK  +E+A      L H+LF GPPG GKT+    +++
Sbjct: 24  PWVEKYRPRNLDDVASQDHAVKVLKKTMESA-----NLPHMLFYGPPGTGKTSTILALSK 78

Query: 77  E------LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE-ILYPAM 129
           +              +         +   + N     V         +   E+   YP  
Sbjct: 79  QLYGPNLYKSRVLELNASDERGISIVRQKIKNFARLTVS--------NPSKEDLEKYP-C 129

Query: 130 EDFQLDLMVGEGPSARSVKINLSR--------FTLIAATTRVGLLTNPLQDRFGIPIRLN 181
             +++ ++          +  L R                 V  + +PL  R     R  
Sbjct: 130 PPYKIIILDEADSMTNDAQAALRRTIENYSNITRFCLICNYVTRIIDPLASRCS-KFRFR 188

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
               E+    ++  A+   +++            +   RI+G  LR+   F + A
Sbjct: 189 LLNNENALNRLKYIAEQEHISLDSNQL-----VLQEVLRISGGDLRKAITFLQSA 238


>gi|119872170|ref|YP_930177.1| replication factor C small subunit [Pyrobaculum islandicum DSM
           4184]
 gi|150415670|sp|A1RSA2|RFCS1_PYRIL RecName: Full=Replication factor C small subunit 1; Short=RFC small
           subunit 1; AltName: Full=Clamp loader small subunit 1
 gi|119673578|gb|ABL87834.1| replication factor C small subunit [Pyrobaculum islandicum DSM
           4184]
          Length = 329

 Score = 74.0 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 86/229 (37%), Gaps = 37/229 (16%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E       RPR+ +E     E  S L+ F+++       + H+LF GPPG GKTT+A V+
Sbjct: 3   ELFWFEKYRPRSFDEVVDLEEVKSRLREFVKSG-----NMPHLLFYGPPGTGKTTMALVL 57

Query: 75  ARE-----LGVNFRSTSGPVIAKAGDLAALLTNLED--------RDVLFIDEIHRLSIIV 121
           ARE        N    +         +   +               ++ +DE   ++   
Sbjct: 58  ARELYGEYWRENTLELNASDERGINVIRERVKEFARTAPVGKAPFKLVILDEADNMTSDA 117

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           ++ L   ME                +    +RF L+A    V  + +P+  R  +  R +
Sbjct: 118 QQALRRIME----------------IYAQNTRFILLA--NYVSRIIDPIISRCAV-FRFS 158

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
                 +   ++  AK  G+ V ++A   I   S G  R A  +L+   
Sbjct: 159 PMPRHLMAERLKYIAKSEGVEVKEDAIDLIYELSEGDMRKAINILQVAA 207


>gi|307717496|gb|ADN88801.1| recombination factor protein [Listeria seeligeri]
          Length = 191

 Score = 74.0 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 46/202 (22%), Positives = 81/202 (40%), Gaps = 17/202 (8%)

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           G+GKT++A  +A      FR+ +     K   ++ A    +    +L +DE+HRL    +
Sbjct: 1   GIGKTSIASAIAGSTKYAFRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQ 60

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           + L P +E   + +++G   S   + IN +    I + T++  L     +   I      
Sbjct: 61  DFLLPLLESGAI-ILIGATTSNPYIAINPA----IRSRTQIFELKPLTVEDIMI------ 109

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT-- 240
             ++      +RG     + + + A    A  S G  R A   L      +E        
Sbjct: 110 -TMDRALADKERGLGNYQVEIDEFAKKHFATASNGDVRSALNALELAVISSEADDDGIIR 168

Query: 241 ITREIADAALLRL--AIDKMGF 260
           IT E+A+  L +   A DK G 
Sbjct: 169 ITLEVAEECLQKKSLAHDKDGD 190


>gi|241959612|ref|XP_002422525.1| replication factor C subunit, putative [Candida dubliniensis CD36]
 gi|223645870|emb|CAX40533.1| replication factor C subunit, putative [Candida dubliniensis CD36]
          Length = 323

 Score = 74.0 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 45/250 (18%), Positives = 83/250 (33%), Gaps = 40/250 (16%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           +S+ V+ E   +   RP+ LE+  G  E    LK+ ++        + +++  G PG+GK
Sbjct: 1   MSKPVTLELPWVEKYRPKKLEDIVGNEETVERLKLIVQ-----DGNMPNMILSGLPGIGK 55

Query: 68  TTLAQVVARE------LGVNFRSTSGPVIAKAGDLAALLTNL---------EDRDVLFID 112
           TT    +A E              +         +   +              + ++ +D
Sbjct: 56  TTSIHCLAYELLGEEYYHQATMELNASDDRGIDVVRNKIKQFAQTKISLPPGRQKIIILD 115

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E   ++   ++ L   ME +                 N +RF    A  +   +  PLQ 
Sbjct: 116 EADSMTPGAQQALRRTMEIYS----------------NTTRFAF--ACNQSSKIIEPLQS 157

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA-GRLLRRVRD 231
           R  I       + E L  +++   K+  +    E    +   + G  R A   L   V  
Sbjct: 158 RCAILRYNRLSDEEVLARLLE-IIKMEDVQYNTEGLQALVFTAEGDMRQAINNLQSTVAG 216

Query: 232 FAEVAHAKTI 241
           F  V      
Sbjct: 217 FEFVNDVNVF 226


>gi|194042984|ref|XP_001926304.1| PREDICTED: replication factor C subunit 5 [Sus scrofa]
          Length = 340

 Score = 74.0 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 75/225 (33%), Gaps = 38/225 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA- 75
             +   RP+TL++     +  S ++ FI       + L H+L  GPPG GKT+     A 
Sbjct: 21  PWVEKYRPQTLDDLISHQDILSTIQKFIS-----EDRLPHLLLYGPPGTGKTSTILACAK 75

Query: 76  -----RELGVNFRSTSGPVIAKAGDLAA-LLTNLEDRDVL-------FIDEIHRLSIIVE 122
                +E G      +         +   +L+    R +         +DE   ++   +
Sbjct: 76  QLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQ 135

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             L   +E F       E      +   LS+                LQ R     R   
Sbjct: 136 NALRRVIEKF------TENTRFCLICNYLSKIIP------------ALQSRC-TRFRFGP 176

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
              E +   ++   +   + ++++    +   S G  R A  +L+
Sbjct: 177 LTPELMVPRLEHVVEEEKVDISEDGMKALITLSSGDMRRALNILQ 221


>gi|159904872|ref|YP_001548534.1| replication factor C small subunit [Methanococcus maripaludis C6]
 gi|226739142|sp|A9A6K6|RFCS_METM6 RecName: Full=Replication factor C small subunit; Short=RFC small
           subunit; AltName: Full=Clamp loader small subunit
 gi|159886365|gb|ABX01302.1| Replication factor C [Methanococcus maripaludis C6]
          Length = 315

 Score = 74.0 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 60/283 (21%), Positives = 101/283 (35%), Gaps = 43/283 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP TL E  G  E    L  ++E      +++ H+LF G PG+GKTT A  +A+
Sbjct: 4   PWVEKYRPETLPEVVGHHEIIKRLTNYVE-----KKSMPHLLFSGSPGVGKTTAALALAK 58

Query: 77  ------------ELGVNFRSTSGPVIAKAGDLAALLT-NLEDRDVLFIDEIHRLSIIVEE 123
                       EL  +       +  K  D A           V+F+DE   L+   + 
Sbjct: 59  DLYGDTWRENFLELNSSDERGIDVIRTKVKDFARTKPIGDAPFKVIFLDESDALTSDAQN 118

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
            L   ME +                 ++ RF  I +      +  P+Q R  I  R +  
Sbjct: 119 ALRRTMEKYS----------------DICRF--ILSCNYPSKIIPPIQSRCAI-FRFSPL 159

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE------VAH 237
           + EDL   ++  ++   L +       I   S G  R A  +L+     ++      V  
Sbjct: 160 KTEDLVENLKDISEKETLTLEKGGIDAIIYVSEGDMRKAINVLQTAAAVSDTVTEEIVYK 219

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV 280
             +  R      + +LA++    +  +  Y  MI     G  +
Sbjct: 220 VASKARPDEIKKMTQLALNGKFVEAREQLYNLMIDWGMSGEDI 262


>gi|328954114|ref|YP_004371448.1| DNA polymerase III, subunits gamma and tau [Desulfobacca
           acetoxidans DSM 11109]
 gi|328454438|gb|AEB10267.1| DNA polymerase III, subunits gamma and tau [Desulfobacca
           acetoxidans DSM 11109]
          Length = 546

 Score = 74.0 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 55/288 (19%), Positives = 91/288 (31%), Gaps = 55/288 (19%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV-- 80
           RP+  +E  GQ      LK  +E+ +         LF GP G+GKT++A+++A+ L    
Sbjct: 11  RPQNFDEVVGQEHITRTLKNALESGRVAHA----FLFSGPRGVGKTSIARILAKALNCAE 66

Query: 81  ----------------------NFRSTSGPVIAKAGDLAALLTNLE------DRDVLFID 112
                                 +     G       ++  L  N++         V  ID
Sbjct: 67  GPAPTPCNRCQSCVEITQGHSLDVLEIDGASNRGIDEVRELRENIKYLPAHGSYKVFIID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H L+      L   +E+                         I ATT    +   +  
Sbjct: 127 EVHMLTKEAFNALLKTLEE------------------PPPHAIFIMATTESHKVPVTILS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R                 +    A+  G  +  E    IA  + G  R A  LL +V  F
Sbjct: 169 RCQRYDFKRLSTAAIQAHLANLTAQE-GWHLAPEGLLLIAQEAEGGMRDAQGLLDQVITF 227

Query: 233 --AEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
              EV+  +          LL L   +   ++   + L ++A     G
Sbjct: 228 GGTEVSPPEIARILGVTDRLLLLQTLEAILNRQAAQLLDILAELHEHG 275


>gi|315283987|ref|ZP_07871985.1| DNA polymerase III subunit gamma/tau [Listeria marthii FSL S4-120]
 gi|313612362|gb|EFR86506.1| DNA polymerase III subunit gamma/tau [Listeria marthii FSL S4-120]
          Length = 579

 Score = 74.0 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 81/230 (35%), Gaps = 21/230 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RP++ ++  GQ      LK  I     + +     LF GP G GKT+ A++ A+
Sbjct: 5   ALYRVFRPQSFQDVVGQEHVTKTLKNAI----VQNKTSHAYLFSGPRGTGKTSAAKIFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +         P      ++    T+    DVL ID      +  +  I E++ Y     
Sbjct: 61  AINCEHGHDGEPCNEC--EICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYAPTVA 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT    L   +  R         
Sbjct: 119 KYKVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRI 178

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
              + +   ++   +   +   ++A   +A  + G  R A  LL +V  +
Sbjct: 179 TTQDIIAR-LKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISY 227


>gi|58336713|ref|YP_193298.1| DNA polymerase III (DNA directed ) gamma-tau [Lactobacillus
           acidophilus NCFM]
 gi|227903276|ref|ZP_04021081.1| DNA polymerase III (DNA directed ) gamma-tau [Lactobacillus
           acidophilus ATCC 4796]
 gi|58254030|gb|AAV42267.1| DNA polymerase III (DNA directed ) gamma-tau [Lactobacillus
           acidophilus NCFM]
 gi|227869081|gb|EEJ76502.1| DNA polymerase III (DNA directed ) gamma-tau [Lactobacillus
           acidophilus ATCC 4796]
          Length = 596

 Score = 74.0 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 82/224 (36%), Gaps = 21/224 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPRT +   GQ      LK  I     R +     LF GP G GKT+ A++ A+ L    
Sbjct: 11  RPRTFDSVIGQEAITDTLKNAI----KRGKVSHAFLFAGPRGTGKTSCAKIFAKALNCTN 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P    A  +AA   ++   D++ ID      +  +  I +++ Y   E      +
Sbjct: 67  LQDGEPCNECANCIAANEGSMP--DIMEIDAASNNGVDEIREIRDKVKYAPTEGKYKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT +  +   +  R            EDL
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRI-SKEDL 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           +  ++       +    +A   IA  + G  R A  +L ++  +
Sbjct: 184 ENRMKYILDQENIKYEVKALNVIAQVADGGMRDALSILDQLLSY 227


>gi|282849744|ref|ZP_06259128.1| DNA polymerase III, subunit gamma and tau [Veillonella parvula ATCC
           17745]
 gi|282580681|gb|EFB86080.1| DNA polymerase III, subunit gamma and tau [Veillonella parvula ATCC
           17745]
          Length = 902

 Score = 74.0 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 52/244 (21%), Positives = 91/244 (37%), Gaps = 25/244 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP+T  +  GQ +    L   I   K         LF GP G GKT++A++ AR
Sbjct: 5   ALYRKYRPQTFTDVVGQHQVSDTLMRAIREDKVAHAY----LFAGPRGTGKTSMAKIFAR 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR--DVLFID-----EIHRLSIIVEEILYPAM 129
            +        GP      + +A  + L  +  DVL ID      I  +  + E + +  +
Sbjct: 61  AINCEH----GPTDHPCNECSACKSILSGQSMDVLEIDAASNRGIDEVRALRESVKFMPV 116

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           E  +   ++ E             ++++   +    I ATT +  L   +  R       
Sbjct: 117 EGRKKVFIIDEAHMLTTEAWNALLKTIEEPPAHVMFIFATTEIEKLPVTIVSRCQRYTFR 176

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
                +D+   +   A+  G ++   AA  IA+ + G  R A  +L +    A  +    
Sbjct: 177 RI-TSDDIAQRLSYVAEKEGFSLDSAAAQLIAVHADGGLRDALSILDQCAGMATGSITPQ 235

Query: 241 ITRE 244
           +  E
Sbjct: 236 VVEE 239


>gi|126697186|ref|YP_001092072.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus
           str. MIT 9301]
 gi|126544229|gb|ABO18471.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus
           str. MIT 9301]
          Length = 586

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 81/226 (35%), Gaps = 19/226 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP  L+E  GQ      LK  +   K         LF GP G GKT+ A++ A+ L    
Sbjct: 13  RPNNLDELVGQKFISITLKQALLTKKIA----PAYLFNGPRGTGKTSSARIFAKSLNCQA 68

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                       DL   +T+    D++ ID      +  +  I+E   +   +      +
Sbjct: 69  FDQPTITPCCKCDLCRQITDGSALDIIEIDAASNTGVENIREIIERARFAPTQARWKVYV 128

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++   SR   I ATT    + + ++ R             D+
Sbjct: 129 IDECHMLSTAASNALLKTIEEPPSRVVFILATTNPERVLSTIKSRCQ-KFDFRRISPSDI 187

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
              +   A+   +    +A   IA RS G  R A  LL ++    E
Sbjct: 188 FQHLSEIAEKESIKYEVQALKMIAKRSNGGMRDAQSLLEQLNLLPE 233


>gi|254564511|ref|XP_002489366.1| replication factor C subunit [Pichia pastoris GS115]
 gi|238029162|emb|CAY67082.1| Subunit of heteropentameric Replication factor C (RF-C) [Pichia
           pastoris GS115]
 gi|328349795|emb|CCA36195.1| replication factor C subunit 2/4 [Pichia pastoris CBS 7435]
          Length = 324

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 45/250 (18%), Positives = 80/250 (32%), Gaps = 39/250 (15%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           ++  +  E   +   RP+ L++  G  +    LK F     A    + H++  G PG+GK
Sbjct: 1   MAAPLKLELPWVEKYRPKLLKDIVGNEDTIERLKAF-----AIDGNVPHMIISGLPGIGK 55

Query: 68  TTLAQVVARELGVNFRST-----SGPVIAKAGDLAALLTNL---------EDRDVLFIDE 113
           TT    +A EL  +         +         +   +                ++ +DE
Sbjct: 56  TTSVHCLAHELLGDMYYDAVLELNASDDRGIEVVRNKIKQFAHKKVSLPPGRHKIVILDE 115

Query: 114 IHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
              ++   ++ L   ME +                   +RF    A      +  PLQ R
Sbjct: 116 ADSMTPGAQQALRRTMEIYSGT----------------TRFVF--ACNMSNKIIEPLQSR 157

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA-GRLLRRVRDF 232
             I      Y+ + L  ++    K  G+  TD+    +   + G  R A   L   V   
Sbjct: 158 CSILRYSKLYDEQVLSRLL-YICKEEGVKYTDDGLEALIFTAEGDMRQAINNLQSTVAGM 216

Query: 233 AEVAHAKTIT 242
             V       
Sbjct: 217 GLVNGDNVFR 226


>gi|84685226|ref|ZP_01013125.1| DNA polymerase III subunits gamma and tau [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84666958|gb|EAQ13429.1| DNA polymerase III subunits gamma and tau [Rhodobacterales
           bacterium HTCC2654]
          Length = 576

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 60/309 (19%), Positives = 109/309 (35%), Gaps = 31/309 (10%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
            + ++        RP T  +  GQ      L+    A +         +  G  G+GKTT
Sbjct: 2   SDSTEYQVLARKYRPETFADLIGQEAMVRTLRNAFAADRIAQA----FVMTGIRGIGKTT 57

Query: 70  LAQVVARELGV-NFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEIL- 125
            A+++A+ +         GP +   G+    +   E R  DV+ +D   R  +     + 
Sbjct: 58  TARIIAKGMNCIGPDGNGGPTVEPCGECEHCVAIAEGRHVDVMEMDAASRTGVGDIREII 117

Query: 126 ----YPAMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
               Y A        ++ E             ++++   +    I ATT +  +   +  
Sbjct: 118 DSVHYRAASARYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLS 177

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R      L   E ED+  +++R A      + D+A   I   + G+ R A  LL    D 
Sbjct: 178 RCQ-RFDLRRIEPEDMIGLLRRIATEEKAEIADDALALITRAAEGSARDATSLL----DQ 232

Query: 233 AEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEP 292
           A    A   T +   A L      ++  D +D     ++  +  G    +    A  ++P
Sbjct: 233 AISHGAGETTADQVRAMLGLADRGRV-LDLID----MILRGDAAGALAELSAQYADGADP 287

Query: 293 RDAIEDLIE 301
              + DL E
Sbjct: 288 MAVLRDLAE 296


>gi|288553617|ref|YP_003425552.1| ATP-dependent proteinase La [Bacillus pseudofirmus OF4]
 gi|288544777|gb|ADC48660.1| ATP-dependent proteinase La [Bacillus pseudofirmus OF4]
          Length = 556

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 59/298 (19%), Positives = 98/298 (32%), Gaps = 57/298 (19%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M++   + R +   +     +RP + ++  GQ E   +L+     A        HV+  G
Sbjct: 44  MEQLRKM-REIQLSEPLSEKVRPISFDDIVGQEEGIRSLR-----AALCGPNPQHVIVYG 97

Query: 62  PPGLGKTTLAQVVARELGVNFRST------------------------------SGPVIA 91
           PPG+GKT  A++V  E   N +S                                 P+  
Sbjct: 98  PPGVGKTAAARLVLEEAKKNSQSPFRQDAVFVELDGTTARFDERGIADPLIGSVHDPIYQ 157

Query: 92  KAGDLAA---------LLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL----MV 138
            AG +            +T      VLFIDEI  L  I    L   +ED ++ L      
Sbjct: 158 GAGAMGQAGIPQPKHGAVTKAHGG-VLFIDEIGELHSIQLNKLLKVLEDRKVFLESAYYS 216

Query: 139 GEGPSARSV------KINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            E             K   + F +I ATTR      P      + +     + +++  I 
Sbjct: 217 EENQQIPKHIHEIFQKGLPADFRMIGATTRTPQELPPAIRSRCLEVYFRALKPQEIILIA 276

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           Q+          + A   IA  +    R A  +++     A     + +T    +  L
Sbjct: 277 QKAINKLSFKAEESALERIAKYATN-GREAVNIVQIASGVATSEGREEVTLRDVEWVL 333


>gi|110637639|ref|YP_677846.1| DNA polymerase III subunits tau/gamma [Cytophaga hutchinsonii ATCC
           33406]
 gi|110280320|gb|ABG58506.1| DNA polymerase III, tau and gamma subunits [Cytophaga hutchinsonii
           ATCC 33406]
          Length = 381

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 83/254 (32%), Gaps = 20/254 (7%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T +   GQ    + LK  I             LF GP G+GKTT A+++A+ +
Sbjct: 8   ARKYRPATFDSVVGQSHITTTLKNAI----KNNHLAQAFLFCGPRGVGKTTNARILAKTI 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHR-----LSIIVEEILYPAMEDFQ 133
                +       +     +   N     +  +D         +  +VE++ YP      
Sbjct: 64  NCTNITADIEACDECESCKSFNNNASFN-IQELDAASNNSVDDIRNLVEQVRYPPQYGKY 122

Query: 134 LDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
              ++ E             ++++   +    I ATT    +   +  R  I    N  +
Sbjct: 123 KIYIIDEVHMLSTAAFNAFLKTLEEPPAYAIFILATTEKHKIIPTILSRCQI-FDFNRIQ 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           I+D+   +   A    +    EA   IA ++ G  R A  +   +  F+           
Sbjct: 182 IKDIAEHLAGIAVKENIKAEKEALHLIAQKADGALRDALSMFDLIVTFSSDNTITYKCAI 241

Query: 245 IADAALLRLAIDKM 258
                L      K+
Sbjct: 242 DNLHILDYDYYFKL 255


>gi|294501427|ref|YP_003565127.1| ATP-dependent protease LonB [Bacillus megaterium QM B1551]
 gi|294351364|gb|ADE71693.1| ATP-dependent protease LonB [Bacillus megaterium QM B1551]
          Length = 555

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 48/251 (19%), Positives = 85/251 (33%), Gaps = 55/251 (21%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +     +RP +  +  GQ +   +LK     A        HV+  GPPG+GKT  A++V 
Sbjct: 57  EPLAERVRPSSFSDIVGQEDGIRSLK-----AALCGPNPQHVIVYGPPGVGKTAAARLVL 111

Query: 76  RELGVNFRSTSG----------------------PVIAKAGD-----------------L 96
            E   N +S                         P+I    D                  
Sbjct: 112 EEAKKNKKSPFKQSAVFVELDATTARFDERGIADPLIGSVHDPIYQGAGAMGQAGIPQPK 171

Query: 97  AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL----DLMVGEGPSARSVKINL- 151
              +T+     +LFIDEI  L  I    L   +ED ++         E     +   ++ 
Sbjct: 172 QGAVTDAHGG-ILFIDEIGELHPIQMNKLLKVLEDRKVFMESAYYSEENTQIPTHIHDIF 230

Query: 152 -----SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDE 206
                + F LI ATTR      P      + +     + +++  + ++ A    + +++E
Sbjct: 231 QNGLPADFRLIGATTRTPNEIPPAIRSRCVEVFFRELDRDEIIKVAKKAANKVRMDISEE 290

Query: 207 AACEIAMRSRG 217
                +  +R 
Sbjct: 291 GLSLFSTYARN 301


>gi|150401783|ref|YP_001325549.1| replication factor C large subunit [Methanococcus aeolicus
           Nankai-3]
 gi|166225152|sp|A6UWR5|RFCL_META3 RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|150014486|gb|ABR56937.1| AAA ATPase central domain protein [Methanococcus aeolicus Nankai-3]
          Length = 474

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 55/290 (18%), Positives = 97/290 (33%), Gaps = 38/290 (13%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
            +   RP+T+ E  G  +    LK +IE      E    VL VGPPG GKTTL   +A +
Sbjct: 3   WVEKYRPKTMSEIVGNNKIKEELKNWIEEI-LHNEIPKPVLLVGPPGCGKTTLTNALAND 61

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAME 130
            G      +         +  ++            R ++ +DE+  LS           +
Sbjct: 62  YGFELIELNASDKRNKDIIRQIVGGASSSKSITGKRVLIVLDEVDGLSGNS--------D 113

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
              +  ++    +A++  I       + A          L+    I    + +    +  
Sbjct: 114 RGGVSEIIKIIKNAKNPII-------LTANDIYKPSLMSLRTVCNIVKIGSVHTN-SIVP 165

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           +++R +   G  V D+    IA  + G  R A   L  +              E     L
Sbjct: 166 VLRRISLKEGFEVDDKILKIIAKHAGGDVRSAINDLESLAM-------GNTFDEDNVREL 218

Query: 251 LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
                DK  FD + + + T          + +E     L E    +++ I
Sbjct: 219 PDRDTDKSIFDAIRIIFKTT------HYDISLEATRD-LKEDIGTVQEWI 261


>gi|307717500|gb|ADN88803.1| recombination factor protein [Listeria seeligeri]
          Length = 191

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 45/202 (22%), Positives = 81/202 (40%), Gaps = 17/202 (8%)

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           G+GKT++A  +A      FR+ +     K   ++ A    +    +L +DE+HRL    +
Sbjct: 1   GIGKTSIASAIAGSTKYAFRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQ 60

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           + L P +E   + +++G   S   + IN +    I + T++  L         + +    
Sbjct: 61  DFLLPLLESGAI-ILIGATTSNPYIAINPA----IRSRTQIFELKP-------LTVEDIM 108

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT-- 240
             ++      +RG     + + + A    A  S G  R A   L      +E        
Sbjct: 109 TTMDRALADKERGLGNYHVEIDEFAKKHFATASNGDVRSALNALELAVISSEADKNGITQ 168

Query: 241 ITREIADAALLRL--AIDKMGF 260
           IT E+A+  L +   A DK G 
Sbjct: 169 ITLEVAEECLQKKSLAHDKDGD 190


>gi|254368843|ref|ZP_04984856.1| hypothetical protein FTAG_00653 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157121764|gb|EDO65934.1| hypothetical protein FTAG_00653 [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 367

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 52/279 (18%), Positives = 96/279 (34%), Gaps = 39/279 (13%)

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHRLS 118
           G   L +  L +++  +  + F   S  V +   D+  L+T+ +  D  VLF+DEIHR +
Sbjct: 2   GNQELVRQVLLELLQAQKKLEFFELSA-VDSGVKDIKKLITDNQHLDSFVLFLDEIHRFN 60

Query: 119 IIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
              ++IL P +E  ++ L+    E  +       +SR  ++       + T  L ++   
Sbjct: 61  KSQQDILLPYVESGKIILIGATTENTTYYLNDALVSRLFILRLKRLSLVATQKLIEK--- 117

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
                  + E L              + D     +   + G  R    LL R+   +   
Sbjct: 118 ----ALSQDEVLAKH--------KFKIDDRLYNAMHNYNEGDCRKILNLLERMFLISTRG 165

Query: 237 HAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAI 296
               + +E+ D A+   + D                     G    E +SA     R   
Sbjct: 166 DEIYLNKELFDQAVGETSRD-----------------FHREGKEFYEQLSAFHKSVRGTD 208

Query: 297 EDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            D    ++         P    R ++ IA + +G   P 
Sbjct: 209 PDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQ 247


>gi|227830342|ref|YP_002832122.1| replication factor C small subunit [Sulfolobus islandicus L.S.2.15]
 gi|229579159|ref|YP_002837557.1| replication factor C small subunit [Sulfolobus islandicus
           Y.G.57.14]
 gi|284997767|ref|YP_003419534.1| Replication factor C [Sulfolobus islandicus L.D.8.5]
 gi|227456790|gb|ACP35477.1| Replication factor C [Sulfolobus islandicus L.S.2.15]
 gi|228009873|gb|ACP45635.1| Replication factor C [Sulfolobus islandicus Y.G.57.14]
 gi|284445662|gb|ADB87164.1| Replication factor C [Sulfolobus islandicus L.D.8.5]
          Length = 330

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 53/279 (18%), Positives = 97/279 (34%), Gaps = 40/279 (14%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           +E       RPRTL++   Q E    LK F++      + + H+LF GPPG GKTT A  
Sbjct: 6   EEILWAEKYRPRTLDDIVNQREIIDRLKKFVK-----EKNMPHLLFAGPPGTGKTTAALA 60

Query: 74  VAR------------ELGVNFRSTSGPVIAKAGDLAA-LLTNLEDRDVLFIDEIHRLSII 120
           +              EL  +       +  K  + A  ++ +     V+ +DE   ++  
Sbjct: 61  LVHDLYGDNYVEYFLELNASDERGIDVIRNKVKEFARTVIPSNVPFKVVLLDEADNMTAD 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            ++ L   ME      +  E                I A   +  +  P+Q R  +  R 
Sbjct: 121 AQQALRRTME------LYTENTRF------------ILACNYLSKIIEPIQSRTAL-FRF 161

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA-- 238
              + ED+   +   AK        +A   I   + G  R +  +L+    + +++    
Sbjct: 162 YPLKKEDVVNRLVYIAKNEKAEYDQKALETIYDITMGDMRKSINILQAASAYGKISVEAV 221

Query: 239 -KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFG 276
            K +           +++   G        L  +   +G
Sbjct: 222 FKVLGLAQPKEVREMISLALQGKFTQAREKLRTLLVTYG 260


>gi|308198335|ref|XP_001386998.2| DNA replication factor C [Scheffersomyces stipitis CBS 6054]
 gi|149388978|gb|EAZ62975.2| DNA replication factor C [Pichia stipitis CBS 6054]
          Length = 325

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 52/277 (18%), Positives = 88/277 (31%), Gaps = 42/277 (15%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           +     E   +   RPR L++  G  E    LK+      A+   + H++  G PG+GKT
Sbjct: 4   TDEPKLELPWVEKYRPRRLDDVVGNEETIERLKLI-----AKDGNMPHMIISGLPGIGKT 58

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAAL--LTNL-------------EDRDVLFIDE 113
           T    +A EL  +       +   A D   +  + N                  ++ +DE
Sbjct: 59  TSIHCLAYELLGDDYYQQATLELNASDDRGIDVVRNRIKQFAQTKIKLPPGRHKIIILDE 118

Query: 114 IHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
              ++   ++ L   ME +                 N +RF    A  +   +  PLQ R
Sbjct: 119 ADSMTPGAQQALRRTMEIYS----------------NTTRFAF--ACNQSSKIIEPLQSR 160

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA-GRLLRRVRDF 232
             I       + + L  +++  A    +    E    +   + G  R A   L   V  F
Sbjct: 161 CAILRYNKLADDQVLTRLLEVSAAE-NVKFNSEGLQALIFTAEGDMRQAINNLQSTVAGF 219

Query: 233 AEVAHAKTITREIADAAL--LRLAIDKMGFDQLDLRY 267
             V              L   R+ I       +D   
Sbjct: 220 GFVNDINVFKIVDQPHPLVIQRILIHCTKDRDIDRAL 256


>gi|160902859|ref|YP_001568440.1| DNA polymerase III, subunits gamma and tau [Petrotoga mobilis SJ95]
 gi|160360503|gb|ABX32117.1| DNA polymerase III, subunits gamma and tau [Petrotoga mobilis SJ95]
          Length = 467

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 80/245 (32%), Gaps = 53/245 (21%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
              RP+  +E  GQ         + + A  + E     +F GP G GKTT A+++A+ L 
Sbjct: 7   RKYRPKDFDEILGQPHVVK----YFKNALNKQEVSHAYIFSGPRGTGKTTTARILAKVLN 62

Query: 80  VNFRS------------------------TSGPVIAKAGDLAALLTN------LEDRDVL 109
                                                  ++  +  +           V 
Sbjct: 63  CKDPQGYNPCNKCENCVSINNNSFLDVIEMDAASNRGIDEIRNIRDSSNYRPVYGKYKVY 122

Query: 110 FIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
            IDE H L+      L   +E+                    S    I ATT +  + + 
Sbjct: 123 IIDEFHMLTREAFNALLKTLEE------------------PPSHVIFILATTNLEKVPDT 164

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           +  R  I    N  + E ++  ++  A   G+    +A   IA R++G  R A  +L +V
Sbjct: 165 IISRAQIINFKNLGQNEIVEG-LKNIASSEGIEYELDALEIIAKRAKGGMRDAISMLEQV 223

Query: 230 RDFAE 234
             F E
Sbjct: 224 EKFGE 228


>gi|23097484|ref|NP_690950.1| DNA polymerase III gamma and tau subunits [Oceanobacillus iheyensis
           HTE831]
 gi|22775707|dbj|BAC11985.1| DNA polymerase III gamma and tau subunits [Oceanobacillus iheyensis
           HTE831]
          Length = 569

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 50/231 (21%), Positives = 86/231 (37%), Gaps = 27/231 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPRT E+  GQ      L+  IE      +   H  LF GP G GKT+ A++ A+ +   
Sbjct: 11  RPRTFEDVVGQTHITRTLQNAIE-----QDKFSHAYLFSGPRGTGKTSAAKIFAQTINCE 65

Query: 82  FRSTSGPVIAKAGDLAAL--LTNLEDRDVLFIDEIHRLSI-----IVEEILYPAMEDFQL 134
                 PV     + AA   + +    DV+ ID     S+     I +++ Y        
Sbjct: 66  H----APVKEPCNECAACRGIQDGSVSDVIEIDAASNTSVDDIRDIRDKVKYAPSTVPYK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             ++ E             ++++        I ATT    +   +  R            
Sbjct: 122 VYIIDEVHMISVNAFNALLKTLEEPPKHVVFILATTEPHKIPLTIISRCQ-RFDFKPISN 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
           + +   +Q   +   + VTDEA   +A+ + G  R A  +L +   ++E  
Sbjct: 181 QSIVGRMQTIMQAENIHVTDEALESVALAAEGGMRDALSILDQAISYSEEK 231


>gi|225848978|ref|YP_002729142.1| DNA polymerase III subunits gamma/tau [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|225643961|gb|ACN99011.1| DNA polymerase III subunit gamma/tau [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 496

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 42/249 (16%), Positives = 82/249 (32%), Gaps = 53/249 (21%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +A     RP++ +E  GQ      LK  ++  +         +F GP G+GKTT+A+++A
Sbjct: 4   EAFSRKYRPKSFKEVIGQDFVVKTLKNAVKLNRVSHAY----IFAGPRGVGKTTIARILA 59

Query: 76  RELGV------------------------NFRSTSGPVIAKAGDLAALLTNL------ED 105
           + L                          +             D+  +  N+        
Sbjct: 60  KTLNCLNPQDFEPCNKCENCLEIEKGSFPDMYEIDAASNRGIDDIRTIRDNVNYQPIKGK 119

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
             +  IDE H L+      L   +E+                     +   I ATT +  
Sbjct: 120 YKIYIIDEAHMLTKEAFNALLKTLEE------------------PPPKNIFILATTELYK 161

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           +   ++ R  + +         +K  + R  +   +   D+A   ++    G  R +  L
Sbjct: 162 IPETIKSRCQVFLFKPP-TKSQIKAYLLRILENEKIPYEDQAVDLLSQELEGGMRDSASL 220

Query: 226 LRRVRDFAE 234
           L +   ++E
Sbjct: 221 LDQAVTYSE 229


>gi|297809595|ref|XP_002872681.1| AAA-type ATPase family protein [Arabidopsis lyrata subsp. lyrata]
 gi|297318518|gb|EFH48940.1| AAA-type ATPase family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 602

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 47/208 (22%), Positives = 80/208 (38%), Gaps = 14/208 (6%)

Query: 47  AKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA---------GDLA 97
           +K  +     VLF GPPG GKT+ A+V+A + G+         +            GD+ 
Sbjct: 356 SKFESNRPRAVLFEGPPGTGKTSCARVIANQAGIPLLYVPLEAVMSKYYGESERLLGDVF 415

Query: 98  ALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLI 157
           +    L D  ++F+DEI   +I  +  ++ A     L +++ +       K    +  +I
Sbjct: 416 SQANELPDGAIIFLDEIDAFAISRDSEMHEAT-RRVLSVLLRQIDGFEQDK----KVVVI 470

Query: 158 AATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRG 217
           AAT R   L   L  RF   I  +  +++  + I+ + AK        + A      S  
Sbjct: 471 AATNRKQDLDPALISRFDSMIMFDLPDLQTRQEIITQYAKQLSKPELVQLAQATEAMSGR 530

Query: 218 TPRIAGRLLRRVRDFAEVAHAKTITREI 245
             R   +   R      +  AK    E 
Sbjct: 531 DIRDVCQGAERTWASKLIRRAKAGGEER 558


>gi|226321772|ref|ZP_03797298.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi
           Bol26]
 gi|226232961|gb|EEH31714.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi
           Bol26]
          Length = 560

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 65/308 (21%), Positives = 112/308 (36%), Gaps = 40/308 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPR      GQ      LK  IE  K         +F GP G+GKT+ A+  AR L    
Sbjct: 12  RPRDFNSLEGQDFVVETLKHSIEKNKIANAY----IFSGPRGVGKTSSARAFARCLNCR- 66

Query: 83  RSTSGPVIAKAGDLA--ALLTNLEDRDVLFIDEIHRLSII-----VEEILYPAMEDFQLD 135
              +GP +   G+ +    + N    DV+ ID     S+       EEI++P        
Sbjct: 67  ---NGPTVMPCGECSNCKSIENDSSLDVVEIDGASNTSVQDIRQIKEEIMFPPAISKYRI 123

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             ++++   +    I ATT    L   ++ R           ++
Sbjct: 124 YIIDEVHMLSNSAFNALLKTIEEPPNYIVFIFATTESHKLPETIKSRCQ-HFNFKLLSLD 182

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA----HAKTIT 242
            +  ++++      +   DEA   IA +S G+ R A  L  ++  F +        ++  
Sbjct: 183 KIYNMLKKVCLEDDIKYEDEALKWIAYKSSGSVRDAYTLFDQIVSFTDSNIKLDQIRSKM 242

Query: 243 REIADAALLRLAIDKMGFDQLDLR-YLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
               D  L +L++  +G D  +L   L  I  +       +           D+IE   E
Sbjct: 243 GLTNDEFLEKLSVSILGEDVKELICVLDSIFSSGVSYEQFL----------LDSIEFFRE 292

Query: 302 PYMIQQGF 309
              ++ G 
Sbjct: 293 ALFLKIGI 300


>gi|289577298|ref|YP_003475925.1| DNA polymerase III subunits gamma and tau [Thermoanaerobacter
           italicus Ab9]
 gi|289527011|gb|ADD01363.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter
           italicus Ab9]
          Length = 515

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 84/229 (36%), Gaps = 21/229 (9%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
              RP++ +E  GQ      LK  I+  +         LF G  G GKT++A++ A+ + 
Sbjct: 7   RKYRPKSFKEVVGQEHIVKTLKNQIKLNRIGHAY----LFTGTRGTGKTSIAKIFAKAVN 62

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII-----VEEILYPAMEDFQL 134
               +   P  +   D+   + N    DVL ID     S+       E ++Y   +    
Sbjct: 63  CLNNAEGEPCNSC--DICHAINNNTTMDVLEIDAASNNSVNDVRELRESVIYAPSQTKYK 120

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             ++ E             ++++   S    I ATT    L + +  R            
Sbjct: 121 VYIIDEVHMLSTGAFNALLKTLEEPPSHVIFILATTEPDKLPDTILSRCQ-RFDFKRIPT 179

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
             +   + R    +G+ + D+    IA+   G+ R A  LL +   + E
Sbjct: 180 RLIAQNLDRICNDSGIKIEDKGLKTIALYGNGSMRDAISLLEQCISYKE 228


>gi|317486264|ref|ZP_07945097.1| DNA polymerase III [Bilophila wadsworthia 3_1_6]
 gi|316922510|gb|EFV43763.1| DNA polymerase III [Bilophila wadsworthia 3_1_6]
          Length = 577

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 82/224 (36%), Gaps = 21/224 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           +  +  RP+T  E TGQ    + L      A A  +     L  G  G+GKTT+A++ A+
Sbjct: 5   SLAARYRPQTFAEVTGQETVKAILSR----AAAEDKVAPAYLLSGTRGVGKTTIARIFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHR-----LSIIVEEILYPAMED 131
            L     + +G    +      + T     DV+ ID            + E I Y  ME 
Sbjct: 61  ALNC-VHAPTGEPCNQCEQCRRI-TMGNHVDVVEIDGASNRGIDDARRLREAIAYAPMEG 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++    R T I ATT        +  R    I    
Sbjct: 119 RYKVFIIDEAHMLTRESFNALLKTLEEPPPRATFILATTEAHKFPITIVSRCQHFIFKAI 178

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
            E E L   + R     G+   + A   +A R+ G+ R +  LL
Sbjct: 179 PEAE-LVAHLTRVLNKEGIPFEENAVRLLARRAAGSVRDSMSLL 221


>gi|224533668|ref|ZP_03674257.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi
           CA-11.2a]
 gi|224513341|gb|EEF83703.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi
           CA-11.2a]
          Length = 560

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 66/307 (21%), Positives = 114/307 (37%), Gaps = 38/307 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPR      GQ      LK  IE  K         +F GP G+GKT+ A+  AR L    
Sbjct: 12  RPRDFNSLEGQDFVVETLKHSIEKNKIANAY----IFSGPRGVGKTSSARAFARCLNCR- 66

Query: 83  RSTSGPVIAKAGDLA--ALLTNLEDRDVLFIDEIHRLSII-----VEEILYPAMEDFQLD 135
              +GP +   G+ +    + N    DV+ ID     S+       EEI++P        
Sbjct: 67  ---NGPTVMPCGECSNCKSIENDSSLDVVEIDGASNTSVQDIRQIKEEIMFPPAISKYRI 123

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             ++++   +    I ATT    L   ++ R           ++
Sbjct: 124 YIIDEVHMLSNSAFNALLKTIEEPPNYIVFIFATTESHKLPETIKSRCQ-HFSFKLLSLD 182

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA----HAKTIT 242
            +  ++++      +   DEA   IA +S G+ R A  L  ++  F++        ++  
Sbjct: 183 KIYNMLKKVCLEDDIKYEDEALKWIAYKSSGSVRDAYTLFDQIVSFSDSNIKLDQIRSKM 242

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
               D  L +L++  +G D      + ++   F  G V  E          D+IE   E 
Sbjct: 243 GLTNDEFLEKLSVSILGEDV--KELICVLDSIFSSG-VSYEQFL------LDSIEFFREA 293

Query: 303 YMIQQGF 309
             ++ G 
Sbjct: 294 LFLKIGI 300


>gi|312148351|gb|ADQ31010.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi
           JD1]
          Length = 560

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 65/308 (21%), Positives = 113/308 (36%), Gaps = 40/308 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPR      GQ      LK  IE  K         +F GP G+GKT+ A+  AR L    
Sbjct: 12  RPRDFNSLEGQDFVVETLKHSIEKNKIANAY----IFSGPRGVGKTSSARAFARCLNCR- 66

Query: 83  RSTSGPVIAKAGDLA--ALLTNLEDRDVLFIDEIHRLSII-----VEEILYPAMEDFQLD 135
              +GP +   G+ +    + N    DV+ ID     S+       EEI++P        
Sbjct: 67  ---NGPTVMPCGECSNCKSIENDSSLDVVEIDGASNTSVQDIRQIKEEIMFPPAISKYRI 123

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             ++++   +    I ATT    L   ++ R           ++
Sbjct: 124 YIIDEVHMLSNSAFNALLKTIEEPPNYIVFIFATTESHKLPETIKSRCQ-HFSFKLLSLD 182

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA----HAKTIT 242
            +  ++++      +   DEA   IA +S G+ R A  L  ++  F++        ++  
Sbjct: 183 KIYNMLKKVCLEDDIKYEDEALKWIAYKSSGSVRDAYTLFDQIVSFSDSNIKLDQIRSKM 242

Query: 243 REIADAALLRLAIDKMGFDQLDLR-YLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
               D  L +L++  +G D  +L   L  I  +       +           D+IE   E
Sbjct: 243 GLTNDEFLEKLSVSILGEDVKELICVLDSIFSSGVSYEQFL----------LDSIEFFRE 292

Query: 302 PYMIQQGF 309
              ++ G 
Sbjct: 293 ALFLKIGI 300


>gi|242218752|ref|XP_002475163.1| predicted protein [Postia placenta Mad-698-R]
 gi|220725657|gb|EED79635.1| predicted protein [Postia placenta Mad-698-R]
          Length = 332

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 80/233 (34%), Gaps = 38/233 (16%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           +  V  E   +   RP+ L++  G  E    LKV      A+     H++  G PG+GKT
Sbjct: 16  TSTVPYELPWVEKYRPQVLDDIVGNAETIDRLKVI-----AKDGNCPHIIISGMPGIGKT 70

Query: 69  TLAQVVAR------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEI 114
           T    +A             EL  +       V  K    A     L      ++ +DE 
Sbjct: 71  TSIHCLAHQLLGDAYKEGVLELNASDERGIDVVRNKIKAFAQKKVTLPPGRHKIVILDEA 130

Query: 115 HRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRF 174
             ++   ++ L   ME                +  N +RF    A      +  P+Q R 
Sbjct: 131 DSMTPGAQQALRRTME----------------IYANTTRF--ALACNMSNKIIEPIQSRC 172

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
            I       + E LK +++   ++  +   D+    +   S G  R A   L+
Sbjct: 173 AILRYAKLRDTEILKRLLE-ICEMEKVQYNDDGLTALIFTSEGDMRQAINNLQ 224


>gi|168818899|ref|ZP_02830899.1| DNA polymerase III, tau subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205344020|gb|EDZ30784.1| DNA polymerase III, tau subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
          Length = 642

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 52/306 (16%), Positives = 108/306 (35%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDNCREIEQGRCVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++   +    + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +A    A   ++  + G+ R A  L     D A  +    ++ +   A
Sbjct: 184 RHQLEHILNEEHIAHEPRALQLLSRAADGSLRDALSL----TDQAIASGDGQVSTQAVSA 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L  D+       L  +  +    G   + +   +A      +A+   +   + +  
Sbjct: 240 MLGTLDDDQA------LSLVEAVVDANGERVMSLINEAAARGIEWEALLVEMLSLLHRIA 293

Query: 309 FIQRTP 314
            +Q +P
Sbjct: 294 MVQLSP 299


>gi|123969399|ref|YP_001010257.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus
           str. AS9601]
 gi|123199509|gb|ABM71150.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus
           str. AS9601]
          Length = 584

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 80/226 (35%), Gaps = 19/226 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP  L+E  GQ      LK  +   K         LF GP G GKT+ A++ A+ L    
Sbjct: 13  RPNNLDELVGQKFISITLKQALLTKKIA----PAYLFNGPRGTGKTSSARIFAKSLNCQA 68

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                       DL   +T     D++ ID      +  +  I+E   +   +      +
Sbjct: 69  FDQPTITPCCKCDLCRQITEGSALDIIEIDAASNTGVENIREIIERARFAPTQARWKVYV 128

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++   SR   I ATT    + N ++ R             D+
Sbjct: 129 IDECHMLSTAASNALLKTIEEPPSRVVFILATTNPERVLNTIKSRCQ-KFDFRRISPSDI 187

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
              +   ++   +    +A   IA RS G  R A  LL ++    E
Sbjct: 188 FQHLSEISEKESIKYEVQALKMIAKRSNGGMRDAQSLLEQLNLLPE 233


>gi|41614964|ref|NP_963462.1| replication factor C small subunit [Nanoarchaeum equitans Kin4-M]
 gi|42559422|sp|P60374|RFCS_NANEQ RecName: Full=Replication factor C small subunit; Short=RFC small
           subunit; AltName: Full=Clamp loader small subunit
 gi|40068688|gb|AAR39023.1| NEQ170 [Nanoarchaeum equitans Kin4-M]
          Length = 322

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 83/233 (35%), Gaps = 39/233 (16%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +      RP+ +++   Q E    LK F+E      + + H+LF GPPG GKTT A  +A
Sbjct: 2   EIWTEKYRPKRIDDIINQEEIKKALKSFVE-----KKNMPHLLFAGPPGTGKTTAALALA 56

Query: 76  RE-----LGVNFRSTSGPVIAKAGDLAALLTNLED--------RDVLFIDEIHRLSIIVE 122
            E        NF   +         +   +               ++F+DE   L+   +
Sbjct: 57  HELYGDAWRENFLELNASDERGIDVIRHKVKEFARAKPIGDVPFKIVFLDEADALTRDAQ 116

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           + L   ME +           ++S +  LS             +  P+Q R  +  +   
Sbjct: 117 QALRRIMEKY-----------SQSTRFILS-------CNYFSKIIEPIQSRVTV-FKFKP 157

Query: 183 YEIEDLKTIVQRGAK--LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
            E E  + ++ R  K     L   DE    +   + G  R A  +L+     +
Sbjct: 158 LEKEAFRELINRIVKGEGLILENEDEIINALYDIAEGDLRKAINILQAAAMMS 210


>gi|38232882|ref|NP_938649.1| DNA polymerase III subunits gamma and tau [Corynebacterium
           diphtheriae NCTC 13129]
 gi|38199140|emb|CAE48764.1| DNA polymerase III subunit gamma/tau [Corynebacterium diphtheriae]
          Length = 707

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 59/314 (18%), Positives = 106/314 (33%), Gaps = 45/314 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP +  E  GQ +    L V +++ +         LF GP G GKT+ A+++AR
Sbjct: 2   ALYRKYRPASFAEVVGQEQVTQPLSVALDSGRINHAY----LFSGPRGCGKTSSARIMAR 57

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR----DVLFIDEIHRLSIIVEEILY------ 126
            L        GP     G   + ++   +     DV  +D     S+     L       
Sbjct: 58  SLNC----VEGPTSTPCGKCNSCISLAPNGPGNLDVTELDAASNRSVDDMRELRDRAMYA 113

Query: 127 PAMEDFQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
           PA   +++ ++         G     + V+   +    I ATT    +   ++ R     
Sbjct: 114 PAESRYRIFIIDEAHMITRDGANALLKIVEEPPAHLIFIFATTEPEKILPTIRSR-THHY 172

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
                  + ++ +++R      +AV D     +     G+PR    +L ++     +A A
Sbjct: 173 PFRLLTPQSMRGLLERTVASEHVAVEDSVYPLVIRAGGGSPRDTLSILDQL-----IAGA 227

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
                +   A +L  A         D   +        G        +A      DAIE 
Sbjct: 228 GPDGLDYNLARMLLGA--------TDDTLIDTTIDALAGNDN-----AALFQVVDDAIEA 274

Query: 299 LIEPYMIQQGFIQR 312
            ++P       + R
Sbjct: 275 GLDPRRFATDLLDR 288


>gi|317027180|ref|XP_001400326.2| replication factor C subunit 2 [Aspergillus niger CBS 513.88]
          Length = 389

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 84/272 (30%), Gaps = 53/272 (19%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
              +++   +   RP+TL++   Q      L+  ++A+      L H+LF GPPG GKT+
Sbjct: 29  EEQAKQQPWVEKYRPKTLDDVAAQDHTTKVLQRTLQAS-----NLPHMLFYGPPGTGKTS 83

Query: 70  LAQVVAR-------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDR---------- 106
               +A+             EL  +     G V  K  + A                   
Sbjct: 84  TILALAKSLFGPSLYRSRILELNASDERGIGIVREKIKNFARAQLTHSTGLGEEYLAQYP 143

Query: 107 ----DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA-TT 161
                ++ +DE   ++   +  L   ME +                   SR T       
Sbjct: 144 CPPFKIIILDEADSMTQDAQSALRRTMEQY-------------------SRITRFCLVCN 184

Query: 162 RVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRI 221
            V  +  PL  R     R    +       ++  AK+  L + D    ++   S G  R 
Sbjct: 185 YVTRIIEPLASRCS-KFRFKALDNTAAGERLEHIAKVENLRLEDGVVDKLIACSEGDMRR 243

Query: 222 AGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           A   ++          A     +  +    + 
Sbjct: 244 AITYMQSAAKLVGAGRAGKKDEDEDEEMTDQE 275


>gi|227894598|ref|ZP_04012403.1| DNA polymerase III (DNA directed ) gamma-tau [Lactobacillus
           ultunensis DSM 16047]
 gi|227863589|gb|EEJ71010.1| DNA polymerase III (DNA directed ) gamma-tau [Lactobacillus
           ultunensis DSM 16047]
          Length = 601

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 82/224 (36%), Gaps = 21/224 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPRT +   GQ      LK  I     R +     LF GP G GKT+ A++ A+ L    
Sbjct: 11  RPRTFDSVIGQEAITDTLKNAI----KRGKVSHAFLFAGPRGTGKTSCAKIFAKALNCTN 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P       +AA   ++   D++ ID      +  +  I +++ Y   E      +
Sbjct: 67  LQDGEPCNKCTNCIAADHGSMP--DIMEIDAASNNGVDEIREIRDKVKYAPTEGKYKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT +  +   +  R            +DL
Sbjct: 125 IDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRI-SKDDL 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           +  ++       +   D+A   IA  + G  R A  +L ++  +
Sbjct: 184 EKRMKYILDQENIKYEDKAIAVIAQVADGGMRDALSILDQLLSY 227


>gi|307267452|ref|ZP_07548940.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|306917533|gb|EFN47819.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter
           wiegelii Rt8.B1]
          Length = 544

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 50/263 (19%), Positives = 93/263 (35%), Gaps = 27/263 (10%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
              RP++ +E  GQ      LK  I+  K         LF G  G GKT++A++ A+ + 
Sbjct: 31  RKYRPKSFKEVVGQEHIVKTLKNQIKLNKIGHAY----LFTGTRGTGKTSVAKIFAKAVN 86

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII-----VEEILYPAMEDFQL 134
               +   P  +   ++   + N    DVL ID     S+       E ++Y   +    
Sbjct: 87  CLKNTEGEPCNSC--EICQAINNNTTMDVLEIDAASNNSVNDVRELRESVIYAPSQAKYK 144

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             ++ E             ++++        I ATT    L + +  R            
Sbjct: 145 VYIIDEVHMLSTGAFNALLKTLEEPPPHVIFILATTEPDKLPDTILSRCQRFDFKRIPTR 204

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
             +   + R    +G+ + ++    IA+   G+ R A  LL +   + E      IT E 
Sbjct: 205 -LIAQNLDRICNDSGIKIEEKGLKTIALYGNGSMRDAISLLEQCASYKE----GLITYED 259

Query: 246 ADAALLRLAIDKMG--FDQLDLR 266
               L     + +    D ++ +
Sbjct: 260 VCEMLGVANDEMLFSLLDYMNAK 282


>gi|18312140|ref|NP_558807.1| replication factor C small subunit [Pyrobaculum aerophilum str.
           IM2]
 gi|42559513|sp|Q8ZYK4|RFCS1_PYRAE RecName: Full=Replication factor C small subunit 1; Short=RFC small
           subunit 1; AltName: Full=Clamp loader small subunit 1
 gi|18159573|gb|AAL62989.1| replication factor C small subunit [Pyrobaculum aerophilum str.
           IM2]
          Length = 329

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 86/229 (37%), Gaps = 37/229 (16%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E       RPR+ +E     E  + L+ F++A       + H+LF GPPG GKTT+A V+
Sbjct: 3   ELFWFEKYRPRSFDEVVDLEEVKARLREFVKAG-----NMPHLLFYGPPGTGKTTMALVL 57

Query: 75  ARE-----LGVNFRSTSGPVIAKAGDLAALLTNLED--------RDVLFIDEIHRLSIIV 121
           ARE        N    +         +   +               ++ +DE   ++   
Sbjct: 58  ARELYGEYWRENTLELNASDERGINVIRERVKEFARTAPVGKAPFKLVILDEADNMTSDA 117

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           ++ L   ME                +    +RF L+A    V  + +P+  R  +  R +
Sbjct: 118 QQALRRIME----------------IYAQNTRFILLA--NYVSRIIDPIISRCAV-FRFS 158

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
                 +   ++  AK  G+ + ++A   I   S G  R A  LL+   
Sbjct: 159 PMPRSLMAERLKFIAKNEGVELREDAINMIYELSEGDMRKAINLLQVAA 207


>gi|332158284|ref|YP_004423563.1| putative protein replication factor C small subunit [Pyrococcus sp.
           NA2]
 gi|331033747|gb|AEC51559.1| putative protein replication factor C small subunit [Pyrococcus sp.
           NA2]
          Length = 1267

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 6/95 (6%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   +   RP+ L+E  GQ      LK +++       ++ H+LF GPPG+GKTT A  +
Sbjct: 11  EKPWVEKYRPQRLDEIVGQEHIVKRLKHYVKTG-----SMPHLLFAGPPGVGKTTAALAL 65

Query: 75  ARE-LGVNFRSTSGPVIAKAGDLAALLTNLEDRDV 108
           ARE  G N+R     + A       +L  + +R V
Sbjct: 66  ARELFGENWRHNFLELNASVSKNTPILVRINERIV 100


>gi|294792632|ref|ZP_06757779.1| DNA polymerase III, gamma and tau subunits [Veillonella sp. 6_1_27]
 gi|294456531|gb|EFG24894.1| DNA polymerase III, gamma and tau subunits [Veillonella sp. 6_1_27]
          Length = 901

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 52/244 (21%), Positives = 91/244 (37%), Gaps = 25/244 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP+T  +  GQ +    L   I   K         LF GP G GKT++A++ AR
Sbjct: 5   ALYRKYRPQTFTDVVGQHQVSDTLMRAIREDKVAHAY----LFAGPRGTGKTSMAKIFAR 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR--DVLFID-----EIHRLSIIVEEILYPAM 129
            +   +    GP      + +A  + L  +  DVL ID      I  +  + E + +  +
Sbjct: 61  AINCEY----GPTDHPCNECSACKSILSGQSMDVLEIDAASNRGIDEIRALRESVKFMPV 116

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           E  +   ++ E             ++++   +    I ATT +  L   +  R       
Sbjct: 117 EGRKKVFIIDEAHMLTTEAWNALLKTIEEPPAHVMFIFATTEIEKLPVTIVSRCQRYTFR 176

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
                +D+   +   A+  G  +   AA  IA+ + G  R A  +L +    A  +    
Sbjct: 177 RI-TSDDIAQRLSYVAEKEGFGLDSAAAQLIAVHADGGLRDALSILDQCAGMATGSITPQ 235

Query: 241 ITRE 244
           +  E
Sbjct: 236 VVEE 239


>gi|312149771|gb|ADQ29842.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi
           N40]
          Length = 560

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 66/307 (21%), Positives = 113/307 (36%), Gaps = 38/307 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPR      GQ      LK  IE  K         +F GP G+GKT+ A+  AR L    
Sbjct: 12  RPRDFNSLEGQDFVVETLKHSIEKNKIANAY----IFSGPRGVGKTSSARAFARCLNCR- 66

Query: 83  RSTSGPVIAKAGDLA--ALLTNLEDRDVLFIDEIHRLSII-----VEEILYPAMEDFQLD 135
              +GP +   G+ +    + N    DV+ ID     S+       EEI++P        
Sbjct: 67  ---NGPTVMPCGECSNCKSIENDSSLDVVEIDGASNTSVQDIRQIKEEIMFPPAISKYRI 123

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             ++++   +    I ATT    L   ++ R           ++
Sbjct: 124 YIIDEVHMLSNSAFNALLKTIEEPPNYIVFIFATTESHKLPETIKSRCQ-HFSFKLLSLD 182

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA----HAKTIT 242
            +  ++++      +   DEA   IA +S G+ R A  L  ++  F +        ++  
Sbjct: 183 KIYNMLKKVCLEDDIKYEDEALKWIAYKSSGSVRDAYTLFDQIVSFTDSNIKLDQIRSKM 242

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
               D  L +L++  +G D      + ++   F  G V  E          D+IE   E 
Sbjct: 243 GLTNDEFLEKLSVSILGEDV--KELICVLDSIFSSG-VSYEQFL------LDSIEFFREA 293

Query: 303 YMIQQGF 309
             ++ G 
Sbjct: 294 LFLKIGI 300


>gi|227827646|ref|YP_002829426.1| replication factor C small subunit [Sulfolobus islandicus M.14.25]
 gi|229584850|ref|YP_002843352.1| replication factor C small subunit [Sulfolobus islandicus M.16.27]
 gi|238619814|ref|YP_002914640.1| replication factor C small subunit [Sulfolobus islandicus M.16.4]
 gi|227459442|gb|ACP38128.1| Replication factor C [Sulfolobus islandicus M.14.25]
 gi|228019900|gb|ACP55307.1| Replication factor C [Sulfolobus islandicus M.16.27]
 gi|238380884|gb|ACR41972.1| Replication factor C [Sulfolobus islandicus M.16.4]
 gi|323474696|gb|ADX85302.1| Replication factor C [Sulfolobus islandicus REY15A]
 gi|323477430|gb|ADX82668.1| Replication factor C [Sulfolobus islandicus HVE10/4]
          Length = 330

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 53/279 (18%), Positives = 96/279 (34%), Gaps = 40/279 (14%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           +E       RPRTL++   Q E    LK F++      + + H+LF GPPG GKTT A  
Sbjct: 6   EEILWAEKYRPRTLDDIVNQREIIDRLKKFVK-----EKNMPHLLFAGPPGTGKTTAALA 60

Query: 74  VAR------------ELGVNFRSTSGPVIAKAGDLAA-LLTNLEDRDVLFIDEIHRLSII 120
           +              EL  +       +  K  + A  ++       V+ +DE   ++  
Sbjct: 61  LVHDLYGDNYVEYFLELNASDERGIDVIRNKVKEFARTVIPGNVPFKVVLLDEADNMTAD 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            ++ L   ME      +  E                I A   +  +  P+Q R  +  R 
Sbjct: 121 AQQALRRTME------LYTENTRF------------ILACNYLSKIIEPIQSRTAL-FRF 161

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA-- 238
              + ED+   +   AK        +A   I   + G  R +  +L+    + +++    
Sbjct: 162 YPLKKEDVVNRLVYIAKNEKAEYDQKALETIYDITMGDMRKSINILQAASAYGKISVEAV 221

Query: 239 -KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFG 276
            K +           +++   G        L  +   +G
Sbjct: 222 FKVLGLAQPKEVREMISLALQGKFTQAREKLRTLLVTYG 260


>gi|228993212|ref|ZP_04153133.1| ATP-dependent protease La [Bacillus pseudomycoides DSM 12442]
 gi|228999261|ref|ZP_04158841.1| ATP-dependent protease La [Bacillus mycoides Rock3-17]
 gi|229006808|ref|ZP_04164441.1| ATP-dependent protease La [Bacillus mycoides Rock1-4]
 gi|228754430|gb|EEM03842.1| ATP-dependent protease La [Bacillus mycoides Rock1-4]
 gi|228760458|gb|EEM09424.1| ATP-dependent protease La [Bacillus mycoides Rock3-17]
 gi|228766538|gb|EEM15180.1| ATP-dependent protease La [Bacillus pseudomycoides DSM 12442]
          Length = 556

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 55/288 (19%), Positives = 99/288 (34%), Gaps = 56/288 (19%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           R +S  +     +RP +  +  GQ +   +LK     A        HV+  GPPG+GKT 
Sbjct: 51  REISLTEPLAEKVRPTSFLDIVGQEDGIRSLK-----AALCGPNPQHVIIYGPPGVGKTA 105

Query: 70  LAQVV---ARELGVNFRSTSG-------------------PVIAKAGD------------ 95
            A++V   A++   +    +                    P+I    D            
Sbjct: 106 AARLVLEEAKKNQKSPFRMNATFIELDATTARFDERGIADPLIGSVHDPIYQGAGAMGQA 165

Query: 96  -----LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL----MVGEGPSARS 146
                    +T+     +LFIDEI  L  I    +   +ED ++ L       E     +
Sbjct: 166 GIPQPKKGAVTDAHGG-ILFIDEIGELHPIQMNKMLKVLEDRKVFLESAYYSEENSMIPT 224

Query: 147 VKINL------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
              ++      + F L+ ATTR      P      + +     + E+++ + +  A+   
Sbjct: 225 YIHDIFQKGLPADFRLVGATTRSPDEIPPAIRSRCLEVFFRELDTEEIQKVAKNAAEKVK 284

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           + +  +    I M +R   R A  L++     A       I  E  + 
Sbjct: 285 MEIGKQGVEMIGMYARN-GREAINLVQISAGMAINEGRSFIKDEDIEW 331


>gi|312880003|ref|ZP_07739803.1| DNA polymerase III, subunits gamma and tau [Aminomonas paucivorans
           DSM 12260]
 gi|310783294|gb|EFQ23692.1| DNA polymerase III, subunits gamma and tau [Aminomonas paucivorans
           DSM 12260]
          Length = 618

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 79/224 (35%), Gaps = 20/224 (8%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
              RP    E  GQ      L   ++  +A        LF GP G GKT+ A++VA+ L 
Sbjct: 7   RRYRPSCFSEIVGQEGVVEALLRSLQEGRASHAY----LFSGPRGCGKTSAARLVAKRLN 62

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHR-----LSIIVEEILYPAMEDFQL 134
               +  G    +     AL    E  DV+ ID         +  +   +     +    
Sbjct: 63  CASPAPGGESCGQCPSCLALAAG-EHMDVVEIDGASNRGIEEIRELKSHVSLAPFQSPHK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             ++ E             ++++   SR   I ATT    +   ++ R            
Sbjct: 122 VYIIDEVHMLTEPAFNALLKTLEEPPSRVYFILATTEPQKVPVTIRSRCVHLPFQRIPND 181

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           + +  + +   +  G+    +A  EIA +S G  R A  LL +V
Sbjct: 182 DVVARLHE-VCRAEGVEAEPQALWEIARQSDGALRDALSLLEQV 224


>gi|221059105|ref|XP_002260198.1| replication factor c subunit [Plasmodium knowlesi strain H]
 gi|221061841|ref|XP_002262490.1| replication factor c subunit 4 [Plasmodium knowlesi strain H]
 gi|193810271|emb|CAQ41465.1| replication factor c subunit, putative [Plasmodium knowlesi strain
           H]
 gi|193811640|emb|CAQ42368.1| replication factor c subunit 4, putative [Plasmodium knowlesi
           strain H]
          Length = 339

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 47/254 (18%), Positives = 92/254 (36%), Gaps = 39/254 (15%)

Query: 2   MDREGLLSRNVSQE-DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M+ +   +R + +  D  I   RP  L++  G     + LK  I      +  + ++L  
Sbjct: 1   MEEDSFKNRLLKRNIDIWIEKYRPENLDDVVGNPFVINTLKSII-----VSGNMPNLLLA 55

Query: 61  GPPGLGKTTLAQVVAREL------------GVNFRSTSGPVIAKAGDLAALLTNL--EDR 106
           G PG GKTT    +A E+              +       +  +    A  + +L     
Sbjct: 56  GAPGTGKTTSILCLASEMLGPQAKKAVLELNASDDRGINVIRDRIKSFAKEIISLPPGKH 115

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
            ++ +DE+  ++   ++ L   ME +                 + +RF    A  +   +
Sbjct: 116 KIIILDEVDSMTTAAQQSLRRIMELYS----------------DTTRF--ALACNQSEKI 157

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
            + LQ R  I       + + LK IV+   ++  +  TD+    +   + G  R A   L
Sbjct: 158 IDALQSRCAIIRYFKLSDDQVLKRIVK-ICQMENIKYTDDGLETLTFIADGDLRKAVNCL 216

Query: 227 RRVRDFAEVAHAKT 240
           +      EV + + 
Sbjct: 217 QSTYAGLEVINKEN 230


>gi|16801912|ref|NP_472180.1| hypothetical protein lin2852 [Listeria innocua Clip11262]
 gi|16415387|emb|CAC98078.1| dnaX [Listeria innocua Clip11262]
          Length = 579

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 81/230 (35%), Gaps = 21/230 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RP++ ++  GQ      LK  I     + +     LF GP G GKT+ A++ A+
Sbjct: 5   ALYRVFRPQSFQDVVGQEHVTKTLKNAI----VQNKTSHAYLFSGPRGTGKTSAAKIFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +         P      ++    T+    DVL ID      +  +  I E++ Y     
Sbjct: 61  AINCEHGHDGEPCNEC--EICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYAPTVA 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT    L   +  R         
Sbjct: 119 KYKVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRI 178

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
              + +   ++   +   +   ++A   +A  + G  R A  LL +V  +
Sbjct: 179 TTQDIIGR-LKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISY 227


>gi|320588439|gb|EFX00908.1| DNA replication factor c subunit [Grosmannia clavigera kw1407]
          Length = 395

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 50/246 (20%), Positives = 86/246 (34%), Gaps = 48/246 (19%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           +   S+    +   RP+TL + T Q    + L+  ++A+      L H+LF GPPG GKT
Sbjct: 26  TNETSRAQPWVEKYRPKTLSDVTAQDHTVTVLQRTLQAS-----NLPHMLFYGPPGTGKT 80

Query: 69  TLAQVVAR-------------ELGVNFRSTSGPVIAKAGDLAAL-LTNLEDR-------- 106
           +    +A+             EL  +       V  K  D A + LTN            
Sbjct: 81  STILALAKELYGPEFVKSRVLELNASDERGISIVREKVKDFARMQLTNPPPGYRDRYPCP 140

Query: 107 --DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164
              ++ +DE   ++   +  L   ME +                  ++RF        V 
Sbjct: 141 PFKLIVLDEADSMTQDAQSALRRTMETYS----------------KITRF--CLICNYVT 182

Query: 165 LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGR 224
            + +PL  R     R    +  + +  V+  A    +++   A   +   S G  R A  
Sbjct: 183 RIIDPLASRCS-KFRFKSLDQGNARARVEDIATREHVSLAPGAVDALIRCSEGDLRKAIT 241

Query: 225 LLRRVR 230
            L+   
Sbjct: 242 FLQSAA 247


>gi|47092324|ref|ZP_00230115.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes
           str. 4b H7858]
 gi|47019303|gb|EAL10045.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes
           str. 4b H7858]
 gi|328468184|gb|EGF39190.1| DNA polymerase III subunits gamma and tau [Listeria monocytogenes
           1816]
          Length = 579

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 81/230 (35%), Gaps = 21/230 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RP++ ++  GQ      LK  I     + +     LF GP G GKT+ A++ A+
Sbjct: 5   ALYRIFRPQSFQDVVGQEHVTKTLKNAI----VQNKTSHAYLFSGPRGTGKTSAAKIFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +         P      ++    T+    DVL ID      +  +  I E++ Y     
Sbjct: 61  AINCEHGHDGEPCNEC--EICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYAPTVA 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT    L   +  R         
Sbjct: 119 KYKVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRI 178

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
              + +   ++   +   +   ++A   +A  + G  R A  LL +V  +
Sbjct: 179 TTQDIIGR-LKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISY 227


>gi|307717498|gb|ADN88802.1| recombination factor protein [Listeria seeligeri]
 gi|307717530|gb|ADN88818.1| recombination factor protein [Listeria seeligeri]
 gi|307717566|gb|ADN88836.1| recombination factor protein [Listeria seeligeri]
 gi|307717570|gb|ADN88838.1| recombination factor protein [Listeria seeligeri]
          Length = 191

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 45/202 (22%), Positives = 81/202 (40%), Gaps = 17/202 (8%)

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           G+GKT++A  +A      FR+ +     K   ++ A    +    +L +DE+HRL    +
Sbjct: 1   GIGKTSIASAIAGSTKYAFRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQ 60

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           + L P +E   + +++G   S   + IN +    I + T++  L         + +    
Sbjct: 61  DFLLPLLESGAI-ILIGATTSNPYIAINPA----IRSRTQIFELKP-------LTVEDIM 108

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT-- 240
             ++      +RG     + + + A    A  S G  R A   L      +E        
Sbjct: 109 TTMDRALADKERGLGNYQVEIDEFAKKHFATASNGDVRSALNALELAVISSEADKNGITQ 168

Query: 241 ITREIADAALLRL--AIDKMGF 260
           IT E+A+  L +   A DK G 
Sbjct: 169 ITLEVAEECLQKKSLAHDKDGD 190


>gi|329930186|ref|ZP_08283799.1| DNA polymerase III, subunit gamma and tau [Paenibacillus sp. HGF5]
 gi|328935208|gb|EGG31689.1| DNA polymerase III, subunit gamma and tau [Paenibacillus sp. HGF5]
          Length = 571

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 48/241 (19%), Positives = 80/241 (33%), Gaps = 55/241 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP++  +  GQ      L+  I     R + + H  LF GP G GKT+ A+++A+ +   
Sbjct: 11  RPQSFGDMVGQQHIIQTLQNAI-----REQRVSHAYLFSGPRGTGKTSAAKILAKAVNCE 65

Query: 82  F------------------------RSTSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                    +           ++  L   ++       R V  I
Sbjct: 66  HGPAEEPCNACEACRRITSGAVMDVQEIDAASNRGVEEIRDLREKVKYAPTEVRRKVYII 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H L+      L   +E+          P A  + I         ATT    L   + 
Sbjct: 126 DEVHMLTTEAFNALLKTLEE----------PPAHVMFIL--------ATTEPHRLPATII 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R           +E+    +++     G+    EA   IA  S G  R A  +L ++  
Sbjct: 168 SRCQ-RFDFRRVSLEEQTGRLEQICGEEGITAEHEALQYIARLSDGGMRDALSILDQIAS 226

Query: 232 F 232
           F
Sbjct: 227 F 227


>gi|170589980|ref|XP_001899751.1| Activator 1 40 kDa subunit [Brugia malayi]
 gi|158592877|gb|EDP31473.1| Activator 1 40 kDa subunit, putative [Brugia malayi]
          Length = 326

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 84/249 (33%), Gaps = 48/249 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+ L E  G       L     AA A+     +++  GPPG GKTT    +AR
Sbjct: 6   PWVEKYRPKMLSEVVGNEFVIQRL-----AAFAKQGNTPNIIISGPPGCGKTTSMWALAR 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL----------------------EDRDVLFIDEI 114
           E+ +  R  +  +   A D   +                              ++ +DE+
Sbjct: 61  EM-LGDRLKNACLELNASDDREIFFKFSGIDVVRNKIKTFAQSKVTLPPGRHKIIILDEV 119

Query: 115 HRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRF 174
             ++   ++ L   ME +                   +RFTL  A  + G +  P+Q R 
Sbjct: 120 DSMTEGAQQALRRTMEIYSKT----------------TRFTL--ACNQSGKVIEPIQSRC 161

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR-RVRDFA 233
            I +R +    E +   + +  +   +   D     +   ++G  R A   L+  V  F 
Sbjct: 162 AI-LRFSKLSEEQIVKRLLQICEAEKVTYDDSGIDALVFTAQGDMRQALNNLQCTVVGFN 220

Query: 234 EVAHAKTIT 242
            V       
Sbjct: 221 NVTADNVFR 229


>gi|307717540|gb|ADN88823.1| recombination factor protein [Listeria monocytogenes]
          Length = 191

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 44/202 (21%), Positives = 82/202 (40%), Gaps = 17/202 (8%)

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           G+GKT++A  +A      FR+ +     K   ++ A    +    +L +DE+HRL    +
Sbjct: 1   GIGKTSIASAIAGSTKYAFRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQ 60

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           + L P +E   + +++G   S   + IN +    I + T++  L         + +    
Sbjct: 61  DFLLPLLESGAI-ILIGATTSNPYIAINPA----IRSRTQIFELKP-------LTVADIM 108

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT-- 240
             ++   +  +RG     + + + A    A  S G  R A   L      +E        
Sbjct: 109 ITMDRALSDKERGLGNYDVEIDEVAKKHFATASNGDVRSALNALELAVISSEPNEDGVIH 168

Query: 241 ITREIADAALLRL--AIDKMGF 260
           IT ++A+  L +   A DK G 
Sbjct: 169 ITLDVAEECLQKKSLAHDKDGD 190


>gi|261404007|ref|YP_003240248.1| DNA polymerase III subunits gamma and tau [Paenibacillus sp.
           Y412MC10]
 gi|261280470|gb|ACX62441.1| DNA polymerase III, subunits gamma and tau [Paenibacillus sp.
           Y412MC10]
          Length = 571

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 48/241 (19%), Positives = 80/241 (33%), Gaps = 55/241 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP++  +  GQ      L+  I     R + + H  LF GP G GKT+ A+++A+ +   
Sbjct: 11  RPQSFGDMVGQQHIIQTLQNAI-----REQRVSHAYLFSGPRGTGKTSAAKILAKAVNCE 65

Query: 82  F------------------------RSTSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                    +           ++  L   ++       R V  I
Sbjct: 66  HGPAEEPCNACEACRRITSGAVMDVQEIDAASNRGVEEIRDLREKVKYAPTEVRRKVYII 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H L+      L   +E+          P A  + I         ATT    L   + 
Sbjct: 126 DEVHMLTTEAFNALLKTLEE----------PPAHVMFIL--------ATTEPHRLPATII 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R           +E+    +++     G+    EA   IA  S G  R A  +L ++  
Sbjct: 168 SRCQ-RFDFRRVSLEEQTGRLEQICGEEGITAEHEALQYIARLSDGGMRDALSILDQIAS 226

Query: 232 F 232
           F
Sbjct: 227 F 227


>gi|256426033|ref|YP_003126686.1| DNA polymerase III, subunits gamma and tau [Chitinophaga pinensis
           DSM 2588]
 gi|256040941|gb|ACU64485.1| DNA polymerase III, subunits gamma and tau [Chitinophaga pinensis
           DSM 2588]
          Length = 634

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 44/245 (17%), Positives = 72/245 (29%), Gaps = 54/245 (22%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+      GQ    + LK  I  ++         LF GP G+GKTT A+++A+ +
Sbjct: 8   ARKYRPQNFSTVVGQSHITTTLKNAIRNSQLAHA----FLFCGPRGVGKTTCARILAKTI 63

Query: 79  GVNFRSTSGPV-------------------------IAKAGDLAALLT------NLEDRD 107
                   G                                D+  L+             
Sbjct: 64  NCENLQPDGEACNQCHSCTSFNEGSSFNIHELDAASNNSVDDIRTLVEQVRFAPQAGKYK 123

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           +  IDE+H LS          +E+                    S    I ATT    + 
Sbjct: 124 IYIIDEVHMLSSSAFNAFLKTLEE------------------PPSYAIFILATTEKHKIL 165

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             +  R  I        I+D    +Q       +    +A   +A ++ G  R +   L 
Sbjct: 166 PTILSRCQIFDFKRI-TIQDTVDHLQEICSKEHIQAETDALHLVAQKTDGCMRDSLSTLD 224

Query: 228 RVRDF 232
           ++  F
Sbjct: 225 KIVSF 229


>gi|224532486|ref|ZP_03673111.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi
           WI91-23]
 gi|225548674|ref|ZP_03769721.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi
           94a]
 gi|226321094|ref|ZP_03796636.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi
           29805]
 gi|224512558|gb|EEF82934.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi
           WI91-23]
 gi|225370704|gb|EEH00140.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi
           94a]
 gi|226233504|gb|EEH32243.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi
           29805]
          Length = 560

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 65/308 (21%), Positives = 112/308 (36%), Gaps = 40/308 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPR      GQ      LK  IE  K         +F GP G+GKT+ A+  AR L    
Sbjct: 12  RPRDFNSLEGQDFVVETLKHSIEKNKIANAY----IFSGPRGVGKTSSARAFARCLNCR- 66

Query: 83  RSTSGPVIAKAGDLA--ALLTNLEDRDVLFIDEIHRLSII-----VEEILYPAMEDFQLD 135
              +GP +   G+ +    + N    DV+ ID     S+       EEI++P        
Sbjct: 67  ---NGPTVMPCGECSNCKSIENDSSLDVVEIDGASNTSVQDIRQIKEEIMFPPAISKYRI 123

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             ++++   +    I ATT    L   ++ R           ++
Sbjct: 124 YIIDEVHMLSNSAFNALLKTIEEPPNYIVFIFATTESHKLPETIKSRCQ-HFSFKLLSLD 182

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA----HAKTIT 242
            +  ++++      +   DEA   IA +S G+ R A  L  ++  F +        ++  
Sbjct: 183 KIYNMLKKVCLEDDIKYEDEALKWIAYKSSGSVRDAYTLFDQIVSFTDSNIKLDQIRSKM 242

Query: 243 REIADAALLRLAIDKMGFDQLDLR-YLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
               D  L +L++  +G D  +L   L  I  +       +           D+IE   E
Sbjct: 243 GLTNDEFLEKLSVSILGEDVKELICVLDSIFSSGVSYEQFL----------LDSIEFFRE 292

Query: 302 PYMIQQGF 309
              ++ G 
Sbjct: 293 ALFLKIGI 300


>gi|216264904|ref|ZP_03436896.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi
           156a]
 gi|215981377|gb|EEC22184.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi
           156a]
          Length = 560

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 65/308 (21%), Positives = 112/308 (36%), Gaps = 40/308 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPR      GQ      LK  IE  K         +F GP G+GKT+ A+  AR L    
Sbjct: 12  RPRDFNSLEGQDFVVETLKHSIEKNKIANAY----IFSGPRGVGKTSSARAFARCLNCR- 66

Query: 83  RSTSGPVIAKAGDLA--ALLTNLEDRDVLFIDEIHRLSII-----VEEILYPAMEDFQLD 135
              +GP +   G+ +    + N    DV+ ID     S+       EEI++P        
Sbjct: 67  ---NGPTVMPCGECSNCKSIENDSSLDVVEIDGASNTSVQDIRQIKEEIMFPPAISKYRI 123

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             ++++   +    I ATT    L   ++ R           ++
Sbjct: 124 YIIDEVHMLSNSAFNALLKTIEEPPNYIVFIFATTESHKLPETIKSRCQ-HFSFKLLSLD 182

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA----HAKTIT 242
            +  ++++      +   DEA   IA +S G+ R A  L  ++  F +        ++  
Sbjct: 183 KIYNMLKKVCLEDDIKYEDEALKWIAYKSSGSVRDAYTLFDQIVSFTDSNIKLDQIRSKM 242

Query: 243 REIADAALLRLAIDKMGFDQLDLR-YLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
               D  L +L++  +G D  +L   L  I  +       +           D+IE   E
Sbjct: 243 GLTNDEFLEKLSVSILGEDVKELICVLDSIFSSGVSYEQFL----------LDSIEFFRE 292

Query: 302 PYMIQQGF 309
              ++ G 
Sbjct: 293 ALFLKIGI 300


>gi|153940009|ref|YP_001392580.1| ATP-dependent protease LonB [Clostridium botulinum F str.
           Langeland]
 gi|152935905|gb|ABS41403.1| ATP-dependent protease LonB [Clostridium botulinum F str.
           Langeland]
 gi|322807543|emb|CBZ05118.1| ATP-dependent protease La [Clostridium botulinum H04402 065]
          Length = 559

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 56/245 (22%), Positives = 83/245 (33%), Gaps = 57/245 (23%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV-------- 74
           RP + +E  GQ      LK  I      +    HV+  GPPG GKT  A+++        
Sbjct: 62  RPSSFDEIIGQENGIKALKAAI-----CSPNPQHVIIYGPPGTGKTAAARLILEDAKKKE 116

Query: 75  --------------ARELGVNFRSTSGPVIAKAGD----------LAAL-------LTNL 103
                         A  +  + R  + P+I    D          LA +       +T  
Sbjct: 117 YSPFNQQSKFMEIDATTVRSDERGIADPLIGSVHDPIYQGAGALGLAGVPQPKPGAVTKA 176

Query: 104 EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG-EGPSARSV---------KINLSR 153
               +LFIDEI  L       L   +ED ++ L      PS  ++             + 
Sbjct: 177 HGG-ILFIDEIGELHPSEMNKLLKVLEDRKVFLDSAYYNPSDNNIPSYIKDIFENGLPAD 235

Query: 154 FTLIAATTRVG-LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIA 212
           F LI ATTR    +T  L+ R            E++K I     K     + +EA   I+
Sbjct: 236 FRLIGATTRNPEEITPALRSRCVEVFFRALL-PEEIKKIAMNAIKKLNFTIEEEACELIS 294

Query: 213 MRSRG 217
                
Sbjct: 295 KYCSN 299


>gi|71027617|ref|XP_763452.1| replication factor C subunit 4 [Theileria parva strain Muguga]
 gi|68350405|gb|EAN31169.1| replication factor C subunit 4, putative [Theileria parva]
          Length = 324

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 80/228 (35%), Gaps = 38/228 (16%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           D  I   RP TL++  G  E  + L+ FI    A+   + ++L  GPPG GKTT    +A
Sbjct: 6   DIWIEKYRPTTLDDIIGNPEITTRLQ-FI----AKEGNMPNLLLCGPPGTGKTTSVLCLA 60

Query: 76  RE-----LGVNFRSTSGPVIAKAGDLAALLTNLEDR---------DVLFIDEIHRLSIIV 121
           RE             +         +   + N   +          ++ +DE+  ++   
Sbjct: 61  RELLGTHFKSAVIELNASDDRGVDVVRESIKNFAKKSLVLPPNKHKIVILDEVDSMTEPA 120

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           ++ L   ME +                   S      A  +   +  P+Q R  +     
Sbjct: 121 QQALRRIMELYS------------------STTRFALACNQSNKIIEPIQSRCAVIRYSK 162

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
             + + LK +V     +  L  TDE    +   + G  R A   L+ V
Sbjct: 163 LQDEQILKRLVT-ICDMENLTYTDEGMEALLFSADGDLRRAVNNLQIV 209


>gi|261855382|ref|YP_003262665.1| DNA polymerase III subunits gamma/tau [Halothiobacillus
           neapolitanus c2]
 gi|261835851|gb|ACX95618.1| DNA polymerase III, subunits gamma and tau [Halothiobacillus
           neapolitanus c2]
          Length = 591

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 67/354 (18%), Positives = 115/354 (32%), Gaps = 80/354 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP++  E  GQ      L   ++ ++     L H  LF G  G+GKTT+A++ A+ L   
Sbjct: 11  RPKSFAEMVGQGHVLQALTNALDQSR-----LHHAYLFTGTRGVGKTTVARIFAKALNCE 65

Query: 82  FRSTS------------------------GPVIAKAGDLAALLTNL------EDRDVLFI 111
              +S                                D   LL N+          +  I
Sbjct: 66  HGISSTPCGVCSACVEIDQGRFVDLIEVDAASRTGVDDTRDLLENVAYAPVRGRFKIYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H  S      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMFSKSSFNALLKTLEE------------------PPEHVKFLLATTDPQKLPVTVL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L    +  ++  +    +   +A    A   IA  + G+ R A  LL +   
Sbjct: 168 SRC-LQFNLRALPLSQIQQHLADVLQKENIAFEPAALHLIAEAANGSMRDALSLLDQAIA 226

Query: 232 FAEVAHAKTITRE-----------IADAALLRLAIDKMG---FDQLDLR-----YLTMIA 272
           F           +               AL + + D++     + LD        L    
Sbjct: 227 FTGGKLDTVQVSQILGLSDHQIIWDMIDALYQQSADRLFALVDEALDRAVEPAILLAQFI 286

Query: 273 RNFGGGPVG--IETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAW 324
            +     +G  I+++SA  + P D ++  I+P ++Q  +   T  GR    +AW
Sbjct: 287 ESIHQLAMGQWIQSMSAAANPPPDELKS-IDPQLLQLWYQIATT-GRR--DMAW 336


>gi|237843887|ref|XP_002371241.1| replication factor C subunit, putative [Toxoplasma gondii ME49]
 gi|211968905|gb|EEB04101.1| replication factor C subunit, putative [Toxoplasma gondii ME49]
 gi|221483809|gb|EEE22121.1| replication factor C subunit, putative [Toxoplasma gondii GT1]
 gi|221504190|gb|EEE29865.1| replication factor C subunit, putative [Toxoplasma gondii VEG]
          Length = 336

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 51/248 (20%), Positives = 88/248 (35%), Gaps = 39/248 (15%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           + + + +   I   RP TL++  G  +    L++      AR   + H++  GPPG GKT
Sbjct: 25  TSSTTLDSIWIEKYRPETLDDVVGNDQVMRRLRII-----AREGNMPHLMLAGPPGTGKT 79

Query: 69  TLAQVVAR------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEI 114
           +    + +            EL  +   T   +  K    A    +L      ++ +DE+
Sbjct: 80  SSVLCLCKQLLGSRWRAYTLELNASDERTIDVIREKVKHFAKEKRDLPAGRHKIVILDEV 139

Query: 115 HRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRF 174
             ++   ++ L   ME F                 + +RF    A      +  PLQ R 
Sbjct: 140 DAMTEAAQQALRRIMEQFS----------------DTTRF--ALACNSSASVIEPLQSRC 181

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA-GRLLRRVRDFA 233
            I +R    +   L   +++   +  L VTD+    I   + G  R A   L   V  F 
Sbjct: 182 AI-LRFRKLDDSQLVRRLRQVCAMEALQVTDDGIEAIVFCADGDMRSALNNLQSTVSAFG 240

Query: 234 EVAHAKTI 241
            V      
Sbjct: 241 VVNRENVE 248


>gi|221053736|ref|XP_002258242.1| replication factor c subunit [Plasmodium knowlesi strain H]
 gi|193808075|emb|CAQ38779.1| replication factor c subunit, putative [Plasmodium knowlesi strain
           H]
          Length = 339

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 47/254 (18%), Positives = 92/254 (36%), Gaps = 39/254 (15%)

Query: 2   MDREGLLSRNVSQE-DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M+ +   +R + +  D  I   RP  L++  G     + LK  I      +  + ++L  
Sbjct: 1   MEEDSFKNRLLKRNIDIWIEKYRPENLDDVVGNPFVINTLKSII-----VSGNMPNLLLA 55

Query: 61  GPPGLGKTTLAQVVAREL------------GVNFRSTSGPVIAKAGDLAALLTNL--EDR 106
           G PG GKTT    +A E+              +       +  +    A  + +L     
Sbjct: 56  GAPGTGKTTSILCLASEMLGPQAKKAVLELNASDDRGINVIRDRIKSFAKEIISLPPGKH 115

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
            ++ +DE+  ++   ++ L   ME +                 + +RF    A  +   +
Sbjct: 116 KIIILDEVDSMTTAAQQSLRRIMELYS----------------DTTRF--ALACNQSEKI 157

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
            + LQ R  I       + + LK IV+   ++  +  TD+    +   + G  R A   L
Sbjct: 158 IDALQSRCAIIRYFKLSDDQVLKRIVK-ICEMENIKYTDDGLETLTFIADGDLRKAVNCL 216

Query: 227 RRVRDFAEVAHAKT 240
           +      EV + + 
Sbjct: 217 QSTYAGLEVINKEN 230


>gi|253582122|ref|ZP_04859346.1| DNA polymerase III gamma and tau [Fusobacterium varium ATCC 27725]
 gi|251836471|gb|EES65008.1| DNA polymerase III gamma and tau [Fusobacterium varium ATCC 27725]
          Length = 484

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 54/286 (18%), Positives = 95/286 (33%), Gaps = 60/286 (20%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
              RP+  EE  GQ E    LK    A+    +     LF GP G+GKTT+A+++A+ + 
Sbjct: 7   RKYRPKNFEEIAGQKEIVKTLK----ASLRNGKTSHAYLFTGPRGVGKTTIARLIAKGVN 62

Query: 80  V-------------------------NFRSTSGPVIAKAGDLAALLTNL------EDRDV 108
                                     +             ++  L   +        + +
Sbjct: 63  CLENGITDEPCNKCENCLSINDGSFMDMIEIDAASNRGIDEIRQLKEKINYQPSKGRKKI 122

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
             IDE+H L+      L   +E+                         I ATT    +  
Sbjct: 123 YIIDEVHMLTKEAFNALLKTLEE------------------PPEHVIFILATTEADKILP 164

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            +  R             ++K  ++  +K  G++V D+    I   S G+ R A  +L R
Sbjct: 165 TIISRCQ-RYDFKTLSPAEMKEKLEEISKNEGVSVPDDVLNLIYENSGGSMRDATSILER 223

Query: 229 VRDFAEVAHAKTITREIADAALLRLAIDKMG---FDQLDLRYLTMI 271
           +         + IT E  +  L    + KM     + ++ +Y  +I
Sbjct: 224 LMITCL---NEEITLEKCEKVLGVTPVKKMKEFLDNVMEKKYKELI 266


>gi|161615318|ref|YP_001589283.1| DNA polymerase III subunits gamma and tau [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|161364682|gb|ABX68450.1| hypothetical protein SPAB_03088 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 642

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 52/306 (16%), Positives = 108/306 (35%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++   +    + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRC-LQFHLKVLDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +A    A   ++  + G+ R A  L     D A  +    ++ +   A
Sbjct: 184 RHQLEHILNEEHIAHEPRALQLLSRAADGSLRDALSL----TDQAIASGDGQVSTQAVSA 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L  D+       L  +  +    G   + +   +A      +A+   +   + +  
Sbjct: 240 MLGTLDDDQA------LSLVEAVVDANGERVMSLINEAAARGIEWEALLVEMLSLLHRIA 293

Query: 309 FIQRTP 314
            +Q +P
Sbjct: 294 MVQLSP 299


>gi|254585047|ref|XP_002498091.1| ZYRO0G02002p [Zygosaccharomyces rouxii]
 gi|238940985|emb|CAR29158.1| ZYRO0G02002p [Zygosaccharomyces rouxii]
          Length = 352

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 48/240 (20%), Positives = 78/240 (32%), Gaps = 34/240 (14%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           +          +   RP+ L++ + Q    S LK  + +A      L H+LF GPPG GK
Sbjct: 15  IEEEPEHTKPWVEKYRPKKLDDVSAQDHTISVLKKTLTSA-----NLPHMLFYGPPGTGK 69

Query: 68  TTLAQVVARE------LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           T+    + RE              +         +   + N     V         S   
Sbjct: 70  TSTIFALTRELYGPELSKTRVLELNASDERGIAIVREKVKNFARLTV---------SKPS 120

Query: 122 EEIL----YPAMEDFQLDLMVGEGPSARS-------VKINLSRFTLIAATTRVGLLTNPL 170
           +E L     P  +   LD        A+S          N++RF        V  + +PL
Sbjct: 121 KEALEKYPCPPYKIIILDEADSMTADAQSALRRTMENHSNVTRF--CLICNYVTRIIDPL 178

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
             R     R    +  +    ++  ++L  +   + A   I   S G  R A  LL+   
Sbjct: 179 ASRCS-KFRFKSLDESNAIGRLKEISQLENVPHEEGALQRILEISNGDMRRAITLLQSAA 237


>gi|168183546|ref|ZP_02618210.1| ATP-dependent protease LonB [Clostridium botulinum Bf]
 gi|237796685|ref|YP_002864237.1| ATP-dependent protease LonB [Clostridium botulinum Ba4 str. 657]
 gi|182673354|gb|EDT85315.1| ATP-dependent protease LonB [Clostridium botulinum Bf]
 gi|229262479|gb|ACQ53512.1| ATP-dependent protease LonB [Clostridium botulinum Ba4 str. 657]
          Length = 559

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 56/245 (22%), Positives = 83/245 (33%), Gaps = 57/245 (23%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV-------- 74
           RP + +E  GQ      LK  I      +    HV+  GPPG GKT  A+++        
Sbjct: 62  RPSSFDEIIGQENGIKALKAAI-----CSPNPQHVIIYGPPGTGKTAAARLILEDAKKKE 116

Query: 75  --------------ARELGVNFRSTSGPVIAKAGD----------LAAL-------LTNL 103
                         A  +  + R  + P+I    D          LA +       +T  
Sbjct: 117 YSPFNQQSKFMEIDATTVRSDERGIADPLIGSVHDPIYQGAGALGLAGVPQPKPGAVTKA 176

Query: 104 EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG-EGPSARSV---------KINLSR 153
               +LFIDEI  L       L   +ED ++ L      PS  ++             + 
Sbjct: 177 HGG-ILFIDEIGELHPSEMNKLLKVLEDRKVFLDSAYYNPSDNNIPSYIKDIFENGLPAD 235

Query: 154 FTLIAATTRVG-LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIA 212
           F LI ATTR    +T  L+ R            E++K I     K     + +EA   I+
Sbjct: 236 FRLIGATTRSPEEITPALRSRCVEVFFRALL-PEEIKKIAMNAIKKLNFTIEEEACELIS 294

Query: 213 MRSRG 217
                
Sbjct: 295 KYCSN 299


>gi|68473223|ref|XP_719417.1| hypothetical protein CaO19.7658 [Candida albicans SC5314]
 gi|46441233|gb|EAL00532.1| hypothetical protein CaO19.7658 [Candida albicans SC5314]
 gi|238880430|gb|EEQ44068.1| activator 1 37 kDa subunit [Candida albicans WO-1]
          Length = 323

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 44/250 (17%), Positives = 83/250 (33%), Gaps = 40/250 (16%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           +S+ V+ E   +   RP+ LE+  G  E    LK+ ++        + +++  G PG+GK
Sbjct: 1   MSKPVTLELPWVEKYRPKKLEDIVGNEETVERLKLIVQ-----DGNMPNMIISGLPGIGK 55

Query: 68  TTLAQVVARE------LGVNFRSTSGPVIAKAGDLAALLTNL---------EDRDVLFID 112
           TT    +A E              +         +   +              + ++ +D
Sbjct: 56  TTSIHCLAYELLGDEHYHQATMELNASDDRGIDVVRNKIKQFAQTKISLPPGRQKIIILD 115

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E   ++   ++ L   +E +                 N +RF    A  +   +  PLQ 
Sbjct: 116 EADSMTPGAQQALRRTIEIYS----------------NTTRFAF--ACNQSSKIIEPLQS 157

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA-GRLLRRVRD 231
           R  I       + E L  +++   K+  +    E    +   + G  R A   L   V  
Sbjct: 158 RCAILRYNRLSDEEVLARLLE-IIKMEDVKYNTEGLQALIFTAEGDMRQAINNLQSTVAG 216

Query: 232 FAEVAHAKTI 241
           F  V      
Sbjct: 217 FGFVNDVNVF 226


>gi|195942043|ref|ZP_03087425.1| DNA polymerase III subunits gamma and tau [Borrelia burgdorferi
           80a]
          Length = 560

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 65/308 (21%), Positives = 112/308 (36%), Gaps = 40/308 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPR      GQ      LK  IE  K         +F GP G+GKT+ A+  AR L    
Sbjct: 12  RPRDFNSLEGQDFVVETLKHSIEKNKIANAY----IFSGPRGVGKTSSARAFARCLNCR- 66

Query: 83  RSTSGPVIAKAGDLA--ALLTNLEDRDVLFIDEIHRLSII-----VEEILYPAMEDFQLD 135
              +GP +   G+ +    + N    DV+ ID     S+       EEI++P        
Sbjct: 67  ---NGPTVMPCGECSNCKSIENDSSLDVVEIDGASNTSVQDIRQIKEEIMFPPAISKYRI 123

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             ++++   +    I ATT    L   ++ R           ++
Sbjct: 124 YIIDEVHMLSNSAFNALLKTIEEPPNYIVFIFATTESHKLPETIKSRCQ-HFSFKLLSLD 182

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA----HAKTIT 242
            +  ++++      +   DEA   IA +S G+ R A  L  ++  F +        ++  
Sbjct: 183 KIYNMLKKVCLEDDIKYEDEALKWIAYKSSGSVRDAYTLFDQIVSFTDSNIKLDQIRSKM 242

Query: 243 REIADAALLRLAIDKMGFDQLDLR-YLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
               D  L +L++  +G D  +L   L  I  +       +           D+IE   E
Sbjct: 243 GLTNDEFLEKLSVSILGEDVKELICVLDSIFSSGVSYEQFL----------LDSIEFFRE 292

Query: 302 PYMIQQGF 309
              ++ G 
Sbjct: 293 ALFLKIGI 300


>gi|218249810|ref|YP_002374972.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi
           ZS7]
 gi|223888742|ref|ZP_03623333.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi
           64b]
 gi|218164998|gb|ACK75059.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi
           ZS7]
 gi|223885558|gb|EEF56657.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi
           64b]
          Length = 560

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 65/308 (21%), Positives = 112/308 (36%), Gaps = 40/308 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPR      GQ      LK  IE  K         +F GP G+GKT+ A+  AR L    
Sbjct: 12  RPRDFNSLEGQDFVVETLKHSIEKNKIANAY----IFSGPRGVGKTSSARAFARCLNCR- 66

Query: 83  RSTSGPVIAKAGDLA--ALLTNLEDRDVLFIDEIHRLSII-----VEEILYPAMEDFQLD 135
              +GP +   G+ +    + N    DV+ ID     S+       EEI++P        
Sbjct: 67  ---NGPTVMPCGECSNCKSIENDSSLDVVEIDGASNTSVQDIRQIKEEIMFPPAISKYRI 123

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             ++++   +    I ATT    L   ++ R           ++
Sbjct: 124 YIIDEVHMLSNSAFNALLKTIEEPPNYIVFIFATTESHKLPETIKSRCQ-HFSFKLLSLD 182

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA----HAKTIT 242
            +  ++++      +   DEA   IA +S G+ R A  L  ++  F +        ++  
Sbjct: 183 KIYNMLKKVCLEDDIKYEDEALKWIAYKSSGSVRDAYTLFDQIVSFTDSNIKLDQIRSKM 242

Query: 243 REIADAALLRLAIDKMGFDQLDLR-YLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
               D  L +L++  +G D  +L   L  I  +       +           D+IE   E
Sbjct: 243 GLTNDEFLEKLSVSILGEDVKELICVLDSIFSSGVSYEQFL----------LDSIEFFRE 292

Query: 302 PYMIQQGF 309
              ++ G 
Sbjct: 293 ALFLKIGI 300


>gi|114763364|ref|ZP_01442771.1| DNA polymerase III subunits gamma and tau [Pelagibaca bermudensis
           HTCC2601]
 gi|114543902|gb|EAU46913.1| DNA polymerase III subunits gamma and tau [Roseovarius sp.
           HTCC2601]
          Length = 588

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 61/311 (19%), Positives = 108/311 (34%), Gaps = 31/311 (9%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           +S    +        RP T  +  GQ      LK   +A +         +  G  G GK
Sbjct: 1   MSEQSPKYQVLARKYRPETFADLVGQDAMVRTLKNAFKAGRIAQA----FIMTGIRGTGK 56

Query: 68  TTLAQVVARELGV-NFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEI 124
           TT A+++A+ +         GP     G+       +E R  DV+ +D      +     
Sbjct: 57  TTTARIIAKGMNCIGPDGEGGPTTEPCGECEHCKAIMEGRHVDVIEMDAASNTGVGDIRE 116

Query: 125 L-----YPAMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           +     Y A        ++ E             ++++        I ATT +  +   +
Sbjct: 117 IIDSVHYRAASARYKIYIIDEVHMLSNSAFNALLKTLEEPPEHVKFIFATTEIRKVPVTV 176

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
             R      L   E E + ++++R A      +TD+A   +   + G+ R A  LL    
Sbjct: 177 LSRCQ-RFDLRRIEPEVMISLLRRIATAEQAEITDDALALVTRAAEGSARDATSLL---- 231

Query: 231 DFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
           D A    A   T E   A L      ++    +DL +  ++  +  G    +    A  +
Sbjct: 232 DQAISHGAGETTAEQVRAMLGLADRGRV----MDL-FEKIMYGDAPGALTELSQQYADGA 286

Query: 291 EPRDAIEDLIE 301
           +P   + DL E
Sbjct: 287 DPLAVLRDLAE 297


>gi|312129467|ref|YP_003996807.1| DNA polymerase iii, subunits gamma and tau [Leadbetterella
           byssophila DSM 17132]
 gi|311906013|gb|ADQ16454.1| DNA polymerase III, subunits gamma and tau [Leadbetterella
           byssophila DSM 17132]
          Length = 553

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 51/273 (18%), Positives = 91/273 (33%), Gaps = 32/273 (11%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T +   GQ    + LK  I + +         LF GP G+GKTT A+++A+ +
Sbjct: 8   ARKYRPVTFDSVVGQSHITTTLKNAISSGQLAQA----FLFTGPRGVGKTTCARILAKTI 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL-----YPAMEDFQ 133
                S       +         N     +  +D     S+     L     +P  +   
Sbjct: 64  NCQNVSADTEPCNECTSCKNFAQNASFN-IHELDAASNNSVEDIRNLIDQVRFPPQDGKY 122

Query: 134 LDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
              ++ E             ++++   +    I ATT    +   +  R  I    N  +
Sbjct: 123 KVYIIDEVHMLSQAAFNAFLKTLEEPPAYAIFILATTEKHKILPTILSRCQI-FDFNRIQ 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           I+D+   +   A    +    EA   IA+++ G  R A  +      F+   + + +  +
Sbjct: 182 IKDMADHLANIAIKENIGFEPEALELIALKADGGLRDALSMFDLNVTFS---NDRVLRYK 238

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGG 277
                L  L  D          YL M    + G
Sbjct: 239 DVLENLHVLDYD---------YYLRMTDHLYKG 262


>gi|297543594|ref|YP_003675896.1| DNA polymerase III subunits gamma and tau [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
 gi|296841369|gb|ADH59885.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
          Length = 516

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 84/229 (36%), Gaps = 21/229 (9%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
              RP++ +E  GQ      LK  I+  +         LF G  G GKT++A++ A+ + 
Sbjct: 7   RKYRPKSFKEVVGQEHIVKTLKNQIKLNRIGHAY----LFTGTRGTGKTSIAKIFAKAVN 62

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII-----VEEILYPAMEDFQL 134
               +   P  +   D+   + N    DVL ID     S+       E ++Y   +    
Sbjct: 63  CLNNTEGEPCNSC--DICHAINNNTTMDVLEIDAASNNSVNDVRELRESVIYAPSQTKYK 120

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             ++ E             ++++   S    I ATT    L + +  R            
Sbjct: 121 VYIIDEVHMLSTGAFNALLKTLEEPPSHVIFILATTEPDKLPDTILSRCQRFDFKRIPTR 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
             +   + R    +G+ + D+    IA+   G+ R A  LL +   + E
Sbjct: 181 -LIAQNLDRICNDSGIKIEDKGLKTIALYGNGSMRDAISLLEQCISYKE 228


>gi|83951302|ref|ZP_00960034.1| DNA polymerase III subunits gamma and tau [Roseovarius nubinhibens
           ISM]
 gi|83836308|gb|EAP75605.1| DNA polymerase III subunits gamma and tau [Roseovarius nubinhibens
           ISM]
          Length = 620

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 66/300 (22%), Positives = 107/300 (35%), Gaps = 31/300 (10%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T  +  GQ      LK   +A +         +  G  G GKTT A+++A+ +
Sbjct: 13  ARKYRPETFADLVGQDAMVRTLKNAFQADRIAQA----FIMTGIRGTGKTTTARIIAKGM 68

Query: 79  GV-NFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSI-----IVEEILYPAME 130
                    GP     G        +E R  DVL +D   R  +     I++ + Y A  
Sbjct: 69  NCIGPDGNGGPTTEPCGQCEHCTAIMEGRHVDVLEMDAASRTGVGDIREIIDSVAYRAAS 128

Query: 131 DFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
                 ++ E             ++++        I ATT +  +   +  R      L 
Sbjct: 129 ARYKIYIIDEVHMLSTSAFNALLKTLEEPPEHVKFIFATTEIRKVPVTVLSRCQ-RFDLR 187

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
             E E +  +++R A      ++D+A   I   + G+ R A  LL    D A    A   
Sbjct: 188 RIEPEVMIALLRRIADAEQAQISDDALALITRAAEGSARDATSLL----DQAISHGAGET 243

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T E   A L      ++  D  DL    ++  +  G    I T  A  ++P   + DL E
Sbjct: 244 TAEQVRAMLGLADRGRV-LDLFDL----ILKGDAAGALTEISTQYADGADPLAVLRDLAE 298


>gi|255026196|ref|ZP_05298182.1| hypothetical protein LmonocytFSL_07310 [Listeria monocytogenes FSL
           J2-003]
          Length = 446

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 81/230 (35%), Gaps = 21/230 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RP++ ++  GQ      LK  I     + +     LF GP G GKT+ A++ A+
Sbjct: 5   ALYRVFRPQSFQDVVGQEHVTKTLKNAI----VQNKTSHAYLFSGPRGTGKTSAAKIFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +         P      ++    T+    DVL ID      +  +  I E++ Y     
Sbjct: 61  AINCEHGHDGEPCNEC--EICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYAPTVA 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT    L   +  R         
Sbjct: 119 KYKVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRI 178

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
              + +   ++   +   +   ++A   +A  + G  R A  LL +V  +
Sbjct: 179 TTQDIIGR-LKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISY 227


>gi|254931024|ref|ZP_05264383.1| DNA polymerase III [Listeria monocytogenes HPB2262]
 gi|293582570|gb|EFF94602.1| DNA polymerase III [Listeria monocytogenes HPB2262]
 gi|328469564|gb|EGF40505.1| DNA polymerase III subunits gamma and tau [Listeria monocytogenes
           220]
          Length = 579

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 81/230 (35%), Gaps = 21/230 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RP++ ++  GQ      LK  I     + +     LF GP G GKT+ A++ A+
Sbjct: 5   ALYRVFRPQSFQDVVGQEHVTKTLKNAI----VQNKTSHAYLFSGPRGTGKTSAAKIFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +         P      ++    T+    DVL ID      +  +  I E++ Y     
Sbjct: 61  AINCEHGHDGEPCNEC--EICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYAPTVA 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT    L   +  R         
Sbjct: 119 KYKVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRI 178

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
              + +   ++   +   +   ++A   +A  + G  R A  LL +V  +
Sbjct: 179 TTQDIIGR-LKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISY 227


>gi|294794411|ref|ZP_06759547.1| DNA polymerase III, gamma and tau subunits [Veillonella sp. 3_1_44]
 gi|294454741|gb|EFG23114.1| DNA polymerase III, gamma and tau subunits [Veillonella sp. 3_1_44]
          Length = 892

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 52/244 (21%), Positives = 90/244 (36%), Gaps = 25/244 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP+T  +  GQ +    L   I   K         LF GP G GKT++A++ AR
Sbjct: 5   ALYRKYRPQTFTDVVGQHQVSDTLMRAIREDKVAHAY----LFAGPRGTGKTSMAKIFAR 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR--DVLFID-----EIHRLSIIVEEILYPAM 129
            +        GP      + +A  + L  +  DVL ID      I  +  + E + +  +
Sbjct: 61  AINCE----QGPTDHPCNECSACKSILSGQSMDVLEIDAASNRGIDEVRALRESVKFMPV 116

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           E  +   ++ E             ++++   +    I ATT +  L   +  R       
Sbjct: 117 EGRKKVFIIDEAHMLTTEAWNALLKTIEEPPAHVMFIFATTEIEKLPVTIVSRCQRYTFR 176

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
                +D+   +   A+  G  +   AA  IA+ + G  R A  +L +    A  +    
Sbjct: 177 RI-TSDDIAQRLSYVAEKEGFGLDSAAAQLIAVHADGGLRDALSILDQCAGMATGSITPQ 235

Query: 241 ITRE 244
           +  E
Sbjct: 236 VVEE 239


>gi|254830860|ref|ZP_05235515.1| hypothetical protein Lmon1_05849 [Listeria monocytogenes 10403S]
          Length = 579

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 81/230 (35%), Gaps = 21/230 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RP++ ++  GQ      LK  I     + +     LF GP G GKT+ A++ A+
Sbjct: 5   ALYRVFRPQSFQDVVGQEHVTKTLKNAI----VQNKTSHAYLFSGPRGTGKTSAAKIFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +         P      ++    T+    DVL ID      +  +  I E++ Y     
Sbjct: 61  AINCEHGHDGEPCNEC--EICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYAPTVA 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT    L   +  R         
Sbjct: 119 KYKVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRI 178

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
              + +   ++   +   +   ++A   +A  + G  R A  LL +V  +
Sbjct: 179 TTQDIIGR-LKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISY 227


>gi|254824931|ref|ZP_05229932.1| DNA polymerase III [Listeria monocytogenes FSL J1-194]
 gi|254851991|ref|ZP_05241339.1| DNA polymerase III [Listeria monocytogenes FSL R2-503]
 gi|255520363|ref|ZP_05387600.1| DNA polymerase III (gamma and tau subunits) [Listeria monocytogenes
           FSL J1-175]
 gi|300763536|ref|ZP_07073534.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes
           FSL N1-017]
 gi|258605289|gb|EEW17897.1| DNA polymerase III [Listeria monocytogenes FSL R2-503]
 gi|293594171|gb|EFG01932.1| DNA polymerase III [Listeria monocytogenes FSL J1-194]
 gi|300515813|gb|EFK42862.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes
           FSL N1-017]
          Length = 579

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 81/230 (35%), Gaps = 21/230 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RP++ ++  GQ      LK  I     + +     LF GP G GKT+ A++ A+
Sbjct: 5   ALYRVFRPQSFQDVVGQEHVTKTLKNAI----VQNKTSHAYLFSGPRGTGKTSAAKIFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +         P      ++    T+    DVL ID      +  +  I E++ Y     
Sbjct: 61  AINCEHGHDGEPCNEC--EICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYAPTVA 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT    L   +  R         
Sbjct: 119 KYKVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRI 178

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
              + +   ++   +   +   ++A   +A  + G  R A  LL +V  +
Sbjct: 179 TTQDIIGR-LKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISY 227


>gi|116874071|ref|YP_850852.1| DNA polymerase III, gamma and tau subunits [Listeria welshimeri
           serovar 6b str. SLCC5334]
 gi|116742949|emb|CAK22073.1| DNA polymerase III, gamma and tau subunits [Listeria welshimeri
           serovar 6b str. SLCC5334]
          Length = 579

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 81/230 (35%), Gaps = 21/230 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RP++ ++  GQ      LK  I     + +     LF GP G GKT+ A++ A+
Sbjct: 5   ALYRVFRPQSFQDVVGQEHVTKTLKNAI----VQNKTSHAYLFSGPRGTGKTSAAKIFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +         P      ++    T+    DVL ID      +  +  I E++ Y     
Sbjct: 61  AINCEHGHDGEPCNEC--EICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYAPTVA 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT    L   +  R         
Sbjct: 119 KYKVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRI 178

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
              + +   ++   +   +   ++A   +A  + G  R A  LL +V  +
Sbjct: 179 TTQDIIGR-LKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISY 227


>gi|16804741|ref|NP_466226.1| hypothetical protein lmo2704 [Listeria monocytogenes EGD-e]
 gi|224499379|ref|ZP_03667728.1| hypothetical protein LmonF1_06652 [Listeria monocytogenes Finland
           1988]
 gi|224502886|ref|ZP_03671193.1| hypothetical protein LmonFR_10254 [Listeria monocytogenes FSL
           R2-561]
 gi|254827269|ref|ZP_05231956.1| dnaX [Listeria monocytogenes FSL N3-165]
 gi|255028847|ref|ZP_05300798.1| hypothetical protein LmonL_06056 [Listeria monocytogenes LO28]
 gi|284800410|ref|YP_003412275.1| hypothetical protein LM5578_0156 [Listeria monocytogenes 08-5578]
 gi|284993596|ref|YP_003415364.1| hypothetical protein LM5923_0156 [Listeria monocytogenes 08-5923]
 gi|16412204|emb|CAD00917.1| dnaX [Listeria monocytogenes EGD-e]
 gi|258599651|gb|EEW12976.1| dnaX [Listeria monocytogenes FSL N3-165]
 gi|284055972|gb|ADB66913.1| hypothetical protein LM5578_0156 [Listeria monocytogenes 08-5578]
 gi|284059063|gb|ADB70002.1| hypothetical protein LM5923_0156 [Listeria monocytogenes 08-5923]
          Length = 579

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 81/230 (35%), Gaps = 21/230 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RP++ ++  GQ      LK  I     + +     LF GP G GKT+ A++ A+
Sbjct: 5   ALYRVFRPQSFQDVVGQEHVTKTLKNAI----VQNKTSHAYLFSGPRGTGKTSAAKIFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +         P      ++    T+    DVL ID      +  +  I E++ Y     
Sbjct: 61  AINCEHGHDGEPCNEC--EICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYAPTVA 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT    L   +  R         
Sbjct: 119 KYKVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRI 178

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
              + +   ++   +   +   ++A   +A  + G  R A  LL +V  +
Sbjct: 179 TTQDIIGR-LKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISY 227


>gi|47095511|ref|ZP_00233120.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes
           str. 1/2a F6854]
 gi|254899839|ref|ZP_05259763.1| hypothetical protein LmonJ_08496 [Listeria monocytogenes J0161]
 gi|254912955|ref|ZP_05262967.1| DNA polymerase III [Listeria monocytogenes J2818]
 gi|254937336|ref|ZP_05269033.1| DNA polymerase III [Listeria monocytogenes F6900]
 gi|47016121|gb|EAL07045.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes
           str. 1/2a F6854]
 gi|258609942|gb|EEW22550.1| DNA polymerase III [Listeria monocytogenes F6900]
 gi|293590956|gb|EFF99290.1| DNA polymerase III [Listeria monocytogenes J2818]
          Length = 579

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 81/230 (35%), Gaps = 21/230 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RP++ ++  GQ      LK  I     + +     LF GP G GKT+ A++ A+
Sbjct: 5   ALYRVFRPQSFQDVVGQEHVTKTLKNAI----VQNKTSHAYLFSGPRGTGKTSAAKIFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +         P      ++    T+    DVL ID      +  +  I E++ Y     
Sbjct: 61  AINCEHGHDGEPCNEC--EICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYAPTVA 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT    L   +  R         
Sbjct: 119 KYKVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRI 178

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
              + +   ++   +   +   ++A   +A  + G  R A  LL +V  +
Sbjct: 179 TTQDIIGR-LKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISY 227


>gi|327276150|ref|XP_003222833.1| PREDICTED: replication factor C subunit 5-like [Anolis
           carolinensis]
          Length = 342

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 75/225 (33%), Gaps = 38/225 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA- 75
             +   RP+TL +     +  S ++ FI       + L H+LF GPPG GKT+     A 
Sbjct: 23  PWVEKYRPQTLNDLISHQDILSTIQKFIS-----EDRLPHLLFYGPPGTGKTSTILACAK 77

Query: 76  -----RELGVNFRSTSGPVIAKAGDLAA-LLTNLEDRDVL-------FIDEIHRLSIIVE 122
                +E        +       G +   +L+    R +         +DE   ++   +
Sbjct: 78  QLYKDKEFNSMVLELNASDDRGIGIVRGPILSFASTRTIFKKGFKLVILDEADAMTQEAQ 137

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             L   +E F       E      +   LS+                LQ R     R   
Sbjct: 138 NALRRVIEKF------TENTRFCLICNYLSKIIP------------ALQSRC-TRFRFGP 178

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
              E +   ++   +   + V+D+    +   S G  R +  +L+
Sbjct: 179 LTPELMVPRLKHVIESEKVDVSDDGMKALVTLSNGDMRRSLNILQ 223


>gi|312137857|ref|YP_004005193.1| DNA polymerase III gamma subunit [Rhodococcus equi 103S]
 gi|311887196|emb|CBH46505.1| DNA polymerase III gamma subunit [Rhodococcus equi 103S]
          Length = 723

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 44/239 (18%), Positives = 80/239 (33%), Gaps = 27/239 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP +  E  GQ      L   ++A +         LF GP G GKT+ A+++AR
Sbjct: 2   ALYRKYRPASFAEVVGQEHVTEPLSTALDAGRINHAY----LFSGPRGCGKTSSARILAR 57

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLT----NLEDRDVLFID-----EIHRLSIIVEEILYP 127
            L        GP     G+ A+ +        + DV+ +D      +     + +   Y 
Sbjct: 58  SLNC----VQGPTSTPCGECASCIALGPGGAGNLDVIELDAASHGGVEDTRELRDRAFYA 113

Query: 128 AMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
             E      +V E             + V+        I ATT    +   ++ R     
Sbjct: 114 PAESRYRVFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSR-THHY 172

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                    ++ ++++      + V D     +     G+PR +  +L ++   A    
Sbjct: 173 PFRLLAPSTMRGLLEKICAQEHVPVEDAVYPLVIRAGGGSPRDSLSVLDQLLAGAGEEG 231


>gi|308190298|ref|YP_003923229.1| DNA-directed DNA polymerase [Mycoplasma fermentans JER]
 gi|307625040|gb|ADN69345.1| DNA-directed DNA polymerase [Mycoplasma fermentans JER]
          Length = 604

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 47/262 (17%), Positives = 78/262 (29%), Gaps = 56/262 (21%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     RP++ ++  GQ      LK  I         + H  LF GP G+GKT++A++ A
Sbjct: 5   ALYRKYRPKSFDDVKGQDHIVQTLKNII-----LNHKISHAYLFSGPRGVGKTSVAKIFA 59

Query: 76  R---------------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD------V 108
                                 +   +             ++  L   ++         V
Sbjct: 60  NVVNCGHGEDLTKLCESCIEKADQNFDVIEMDAASNNGVNEIRDLRDKIQHSPASGNYKV 119

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
             IDE+H LS      L   +E+          P A ++ I         ATT    +  
Sbjct: 120 YIIDEVHMLSKGAFNALLKTLEE----------PPAHAIFIL--------ATTDPQKIPL 161

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            +  R            + L   ++       +   D     IA  + G  R A  +   
Sbjct: 162 TILSRVQ-RYNFRKISNQVLINQIKEVLDKEKIKYEDSTIAYIARLATGGMRDALSI--- 217

Query: 229 VRDFAEVAHAKTITREIADAAL 250
             D A       I+ +    A 
Sbjct: 218 -VDQAAAYGNGKISLKDVMYAF 238


>gi|189462594|ref|ZP_03011379.1| hypothetical protein BACCOP_03284 [Bacteroides coprocola DSM 17136]
 gi|189430755|gb|EDU99739.1| hypothetical protein BACCOP_03284 [Bacteroides coprocola DSM 17136]
          Length = 623

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 79/228 (34%), Gaps = 20/228 (8%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T +   GQ    + LK  I   K         LF GP G+GKTT A++ A+ +
Sbjct: 8   ARKYRPATFDTVVGQRALTTTLKNAIANQKLAHAY----LFCGPRGVGKTTCARIFAKTI 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII------VEEILYPAMEDF 132
                +  G    +     A        ++  +D     S+        +  + P +  +
Sbjct: 64  NCLHPTADGEACNECESCRA-FNEQRSYNIHELDAASNNSVEDIRSLIEQVRIPPQIGKY 122

Query: 133 QLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           ++ ++               ++++        I ATT    +   +  R  I    N   
Sbjct: 123 KVYIIDEVHMLSQAAFNAFLKTLEEPPHHAIFILATTEKHKILPTILSRCQI-YDFNRIS 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           + D    ++  A+   +    EA   IA ++ G  R A  +  +V  F
Sbjct: 182 VNDTVEHLENVARKEHIEAEPEALNVIAQKADGGMRDALSIFDQVVSF 229


>gi|153933779|ref|YP_001385553.1| ATP-dependent protease LonB [Clostridium botulinum A str. ATCC
           19397]
 gi|153936700|ref|YP_001388959.1| ATP-dependent protease LonB [Clostridium botulinum A str. Hall]
 gi|152929823|gb|ABS35323.1| ATP-dependent protease LonB [Clostridium botulinum A str. ATCC
           19397]
 gi|152932614|gb|ABS38113.1| ATP-dependent protease LonB [Clostridium botulinum A str. Hall]
          Length = 559

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 56/245 (22%), Positives = 83/245 (33%), Gaps = 57/245 (23%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV-------- 74
           RP + +E  GQ      LK  I      +    HV+  GPPG GKT  A+++        
Sbjct: 62  RPSSFDEIIGQENGIKALKAAI-----CSPNPQHVIIYGPPGTGKTAAARLILEDAKKKE 116

Query: 75  --------------ARELGVNFRSTSGPVIAKAGD----------LAAL-------LTNL 103
                         A  +  + R  + P+I    D          LA +       +T  
Sbjct: 117 YSPFNQQSKFMEIDATTVRSDERGIADPLIGSVHDPIYQGAGALGLAGVPQPKPGAVTKA 176

Query: 104 EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG-EGPSARSV---------KINLSR 153
               +LFIDEI  L       L   +ED ++ L      PS  ++             + 
Sbjct: 177 HGG-ILFIDEIGELHPSEMNKLLKVLEDRKVFLDSAYYNPSDNNIPSYIKDIFENGLPAD 235

Query: 154 FTLIAATTRVG-LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIA 212
           F LI ATTR    +T  L+ R            E++K I     K     + +EA   I+
Sbjct: 236 FRLIGATTRSPEEITPALRSRCVEVFFRALL-PEEIKKIAMNAIKKLNFTIEEEACELIS 294

Query: 213 MRSRG 217
                
Sbjct: 295 KYCSN 299


>gi|329121190|ref|ZP_08249818.1| DNA polymerase III, subunits gamma and tau [Dialister
           micraerophilus DSM 19965]
 gi|327470272|gb|EGF15733.1| DNA polymerase III, subunits gamma and tau [Dialister
           micraerophilus DSM 19965]
          Length = 582

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 49/237 (20%), Positives = 80/237 (33%), Gaps = 53/237 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV-- 80
           RPRT  E  GQ      L      A  + +     LF GP G GKT++A+++A+ +    
Sbjct: 11  RPRTFSEVVGQKHISVPL----CNALIQNKVAHAYLFSGPRGTGKTSMAKILAKAVNCLN 66

Query: 81  ----------------------NFRSTSGPVIAKAGDLAAL------LTNLEDRDVLFID 112
                                 +             ++ AL      L     + V  ID
Sbjct: 67  PENSNPCNNCPNCNEINQGNSLDVYEIDAASNRGIEEIRALKESVCSLPATCRKKVYIID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H L+      L   +E+                    S    I ATT    +   +  
Sbjct: 127 EVHMLTKEAFNALLKTLEE------------------PPSYIMFILATTEPEKIPLTILS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           R           ++ +K  +   +K +   +T++AA  IA+R+ G  R A  LL + 
Sbjct: 169 RCQRYEFRRI-SVDAIKEHLLNISKKSNFHLTEDAAALIAVRADGGLRDALSLLDQC 224


>gi|46908883|ref|YP_015272.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|226225256|ref|YP_002759363.1| DNA polymerase III (gamma and tau subunits) [Listeria monocytogenes
           Clip81459]
 gi|46882156|gb|AAT05449.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|225877718|emb|CAS06432.1| Putative DNA polymerase III (gamma and tau subunits) [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
          Length = 579

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 81/230 (35%), Gaps = 21/230 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RP++ ++  GQ      LK  I     + +     LF GP G GKT+ A++ A+
Sbjct: 5   ALYRVFRPQSFQDVVGQEHVTKTLKNAI----VQNKTSHAYLFSGPRGTGKTSAAKIFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +         P      ++    T+    DVL ID      +  +  I E++ Y     
Sbjct: 61  AINCEHGHDGEPCNEC--EICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYAPTVA 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT    L   +  R         
Sbjct: 119 KYKVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRI 178

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
              + +   ++   +   +   ++A   +A  + G  R A  LL +V  +
Sbjct: 179 TTQDIIGR-LKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISY 227


>gi|325115165|emb|CBZ50721.1| putative replication factor c subunit [Neospora caninum Liverpool]
          Length = 347

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 55/260 (21%), Positives = 91/260 (35%), Gaps = 47/260 (18%)

Query: 5   EGLLSRNVSQEDA--------DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH 56
           E L   N  +EDA         I   RP TL++  G  +    L++      A+   + H
Sbjct: 9   ENLPPDNRGKEDASPTTLDSIWIEKYRPETLDDVVGNDQVMRRLRII-----AKEGNMPH 63

Query: 57  VLFVGPPGLGKTTLAQVVAR------------ELGVNFRSTSGPVIAKAGDLAALLTNL- 103
           ++  GPPG GKT+    + +            EL  +   T   +  K    A    +L 
Sbjct: 64  LMLAGPPGTGKTSSVLCLCKQLLGSRWRACTLELNASDERTIDVIREKVKHFAKEKRDLP 123

Query: 104 -EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTR 162
                ++ +DE+  ++   ++ L   ME F                 + +RF    A   
Sbjct: 124 PGRHKIVILDEVDAMTEAAQQALRRIMEQFS----------------DTTRF--ALACNS 165

Query: 163 VGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
              +  PLQ R  I +R    +   L   +++   +  + VTD+    I   + G  R A
Sbjct: 166 SASVIEPLQSRCAI-LRFRKLDDAQLVRRLRQVCSMEAVQVTDDGMEAIVFCADGDMRSA 224

Query: 223 -GRLLRRVRDFAEVAHAKTI 241
              L   V  F  V      
Sbjct: 225 LNNLQSTVSAFGIVNRENVE 244


>gi|120436181|ref|YP_861867.1| DNA polymerase III subunit gamma/tau [Gramella forsetii KT0803]
 gi|117578331|emb|CAL66800.1| DNA polymerase III subunit gamma/tau [Gramella forsetii KT0803]
          Length = 653

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 78/233 (33%), Gaps = 41/233 (17%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+T ++  GQ    + L      A         +LF GP G+GKTT A+++A+ +
Sbjct: 8   ARKYRPQTFKDVVGQQAITNTL----ANAINNNHLAQALLFTGPRGVGKTTCARILAKMI 63

Query: 79  G------------VNFRSTSGPVIAKAGDLAALLT------NLEDRDVLFIDEIHRLSII 120
                         N             D+  L+        + +  V  IDE+H LS  
Sbjct: 64  NQKETQDPNEDFAFNIFELDAASNNSVDDIRNLIDQVRIPPQVGNYKVYIIDEVHMLSAS 123

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                   +E+                         I ATT    +   +  R  I    
Sbjct: 124 AFNAFLKTLEE------------------PPKHAIFILATTEKHKIIPTILSRCQIFDFK 165

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
               + D K  +   A+  G+   D+A   IA ++ G  R A  +  RV  F+
Sbjct: 166 RI-TVTDAKNYLAHIAEQEGVNAEDDALHIIAQKADGAMRDALSIYDRVVSFS 217


>gi|242398094|ref|YP_002993518.1| Replication factor C small subunit [Thermococcus sibiricus MM 739]
 gi|242264487|gb|ACS89169.1| Replication factor C small subunit [Thermococcus sibiricus MM 739]
          Length = 766

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 10/107 (9%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   +   RP  L++  GQ      LK +++ A     ++ H+LF GPPG GKTT +  +
Sbjct: 15  EKPWVEKYRPERLDDIVGQDHIVKRLKHYVKTA-----SMPHLLFAGPPGTGKTTSSLAL 69

Query: 75  ARE-----LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHR 116
           ARE        NF   +  V      L  +   +       +D+++ 
Sbjct: 70  ARELFGEHWRHNFLELNASVSKDTPILVRINGRVMRTTFAELDKLYF 116


>gi|237784776|ref|YP_002905481.1| DNA polymerase III subunits gamma and tau [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237757688|gb|ACR16938.1| DNA polymerase III, gamma and tau subunit [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 990

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 45/239 (18%), Positives = 77/239 (32%), Gaps = 27/239 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T  +  GQ      L   ++A +         LF GP G GKT+ A+++AR
Sbjct: 2   ALYRKYRPATFADVVGQEHVTVPLSRALDAGRINHAY----LFSGPRGCGKTSSARILAR 57

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR----DVLFIDEIHRLSIIVEEIL-----YP 127
            L        GP     G+  +            DV  +D      +     L     Y 
Sbjct: 58  SLNC----VHGPTSTPCGECESCRALAPGGPGSLDVTELDAASHRGVEDMRDLRDRAIYA 113

Query: 128 AMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
             E      ++ E             + V+        I ATT    +   ++ R     
Sbjct: 114 PAESRYRVFIIDEAHMITKEGFNALLKIVEEPPEHLVFIFATTEPEKVLTTIKSR-THQY 172

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                   D++ +++R      + V D     +     G+PR +  +L ++   A+   
Sbjct: 173 PFRLLAPNDMRGLLERICSEEKVQVEDSVYPLVIRAGGGSPRDSLSVLDQLLAGADENG 231


>gi|146310611|ref|YP_001175685.1| DNA polymerase III subunits gamma and tau [Enterobacter sp. 638]
 gi|145317487|gb|ABP59634.1| DNA polymerase III, tau subunit / DNA polymerase III, gamma subunit
           [Enterobacter sp. 638]
          Length = 642

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 53/317 (16%), Positives = 108/317 (34%), Gaps = 31/317 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++   S    + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPSHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +     A   +A  + G+ R A  L     D A  +    ++      
Sbjct: 184 RAQLEHILDEEKIVHEPRALQLLARAADGSLRDALSL----TDQAIASGDGQLSTVAVST 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L  D+       L  +  +    G   + +  ++A      +A+   +   + +  
Sbjct: 240 MLGTLDDDQA------LSLVEAVIEANGERVMSLVNVAASRGVEWEALLVEMLALLHRVA 293

Query: 309 FIQRTPRGRLLMPIAWQ 325
            +Q +P        A +
Sbjct: 294 MLQLSPAAIGADMAAIE 310


>gi|315644459|ref|ZP_07897592.1| DNA polymerase III, subunits gamma and tau [Paenibacillus vortex
           V453]
 gi|315280209|gb|EFU43502.1| DNA polymerase III, subunits gamma and tau [Paenibacillus vortex
           V453]
          Length = 573

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 48/241 (19%), Positives = 80/241 (33%), Gaps = 55/241 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP++  +  GQ      L+  I     R + + H  LF GP G GKT+ A+++A+ +   
Sbjct: 11  RPQSFGDMVGQQHIIQTLQNAI-----REQRVSHAYLFSGPRGTGKTSAAKILAKAVNCE 65

Query: 82  F------------------------RSTSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                    +           ++  L   ++       R V  I
Sbjct: 66  HGPAEEPCNECEACRRITSGAVMDVQEIDAASNRGVEEIRDLREKVKYAPTEVRRKVYII 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H L+      L   +E+          P A  + I         ATT    L   + 
Sbjct: 126 DEVHMLTTEAFNALLKTLEE----------PPAHVMFIL--------ATTEPHRLPATII 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R           +++    +Q+     G+    EA   IA  S G  R A  +L ++  
Sbjct: 168 SRCQ-RFDFRRVSLDEQTGRLQQICGEEGITADHEALQYIARLSDGGMRDALSILDQIAS 226

Query: 232 F 232
           F
Sbjct: 227 F 227


>gi|313673332|ref|YP_004051443.1| DNA polymerase iii, subunits gamma and tau [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312940088|gb|ADR19280.1| DNA polymerase III, subunits gamma and tau [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 529

 Score = 72.8 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 62/301 (20%), Positives = 100/301 (33%), Gaps = 62/301 (20%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     RP+  +E  GQ      LK  IE  +     + H  LF GP G+GKTT A+V A
Sbjct: 6   ALARKYRPQNFDEIVGQEFVVKTLKNAIELGR-----ISHAYLFTGPRGIGKTTAARVFA 60

Query: 76  RELGV------------------------NFRSTSGPVIAKAGDLAALLTNLE------D 105
           + +                          +     G    K  +   +  N+        
Sbjct: 61  KAVNCLNPIGVNPCNQCSNCMEINNGTSVDVIEIDGASNRKVEEARNIRENVRILPINNK 120

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
             V  IDE+H L+      L   +E+    +  ++    + +     LSR          
Sbjct: 121 YKVYIIDEVHMLTEEAFNALLKTLEEPPDYVIFILATTDAHKIPMTILSRCQ-------- 172

Query: 164 GLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAG 223
                    ++      N Y    L +I++      G++  +++   I   S G  R A 
Sbjct: 173 ---------KYDFKKIPNNYMRNYLLSIME----KEGISCDNDSLNLIIRNSDGCMRDAL 219

Query: 224 RLLRRVRDFAEVAHAKTITREIADAALLRLAID-KMGFDQLDLRYLTMIARNFGGGPVGI 282
            L+ ++  F         T EI D +  +LA D   G    D   L  +   F     GI
Sbjct: 220 SLIDQLVAFTGGNITYENTSEILDLSEQKLANDIFEGIINGDTNNLFDLIDEFSRK--GI 277

Query: 283 E 283
           +
Sbjct: 278 D 278


>gi|156095817|ref|XP_001613943.1| replication factor C subunit 4 [Plasmodium vivax SaI-1]
 gi|148802817|gb|EDL44216.1| replication factor C subunit 4, putative [Plasmodium vivax]
          Length = 336

 Score = 72.8 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 48/254 (18%), Positives = 92/254 (36%), Gaps = 39/254 (15%)

Query: 2   MDREGLLSRNVSQE-DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M+ +   +R + +  D  I   RP  L++  G     + LK  I      +  + ++L  
Sbjct: 1   MEEDSFKNRLLKRNIDIWIEKYRPEYLDDVVGNPFVINTLKSII-----VSGNMPNLLLA 55

Query: 61  GPPGLGKTTLAQVVAREL------------GVNFRSTSGPVIAKAGDLAALLTNL--EDR 106
           G PG GKTT    +A E+              +       +  +    A  + +L     
Sbjct: 56  GAPGTGKTTSILCLASEMLGAQAKKAVLELNASDDRGINVIRDRIKSFAKEIISLPPGKH 115

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
            ++ +DE+  ++   ++ L   ME +                 + +RF    A  +   +
Sbjct: 116 KIIILDEVDSMTTAAQQSLRRIMELYS----------------DTTRF--ALACNQSEKI 157

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
            + LQ R  I       + + LK IV+   +L  +  TD+    +   + G  R A   L
Sbjct: 158 IDALQSRCAIIRYFKLSDDQVLKRIVK-ICQLENIKYTDDGLETLTFIADGDLRKAVNCL 216

Query: 227 RRVRDFAEVAHAKT 240
           +      EV + + 
Sbjct: 217 QSTYAGLEVINKEN 230


>gi|148381178|ref|YP_001255719.1| ATP-dependent protease [Clostridium botulinum A str. ATCC 3502]
 gi|168179121|ref|ZP_02613785.1| ATP-dependent protease LonB [Clostridium botulinum NCTC 2916]
 gi|226950657|ref|YP_002805748.1| ATP-dependent protease LonB [Clostridium botulinum A2 str. Kyoto]
 gi|148290662|emb|CAL84791.1| putative ATP-dependent protease [Clostridium botulinum A str. ATCC
           3502]
 gi|182670118|gb|EDT82094.1| ATP-dependent protease LonB [Clostridium botulinum NCTC 2916]
 gi|226842984|gb|ACO85650.1| ATP-dependent protease LonB [Clostridium botulinum A2 str. Kyoto]
          Length = 559

 Score = 72.8 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 56/245 (22%), Positives = 83/245 (33%), Gaps = 57/245 (23%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV-------- 74
           RP + +E  GQ      LK  I      +    HV+  GPPG GKT  A+++        
Sbjct: 62  RPSSFDEIIGQENGIKALKAAI-----CSPNPQHVIIYGPPGTGKTAAARLILEDAKKKE 116

Query: 75  --------------ARELGVNFRSTSGPVIAKAGD----------LAAL-------LTNL 103
                         A  +  + R  + P+I    D          LA +       +T  
Sbjct: 117 YSPFNQQSKFMEIDATTVRSDERGIADPLIGSVHDPIYQGAGALGLAGVPQPKPGAVTKA 176

Query: 104 EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG-EGPSARSV---------KINLSR 153
               +LFIDEI  L       L   +ED ++ L      PS  ++             + 
Sbjct: 177 HGG-ILFIDEIGELHPSEMNKLLKVLEDRKVFLDSAYYNPSDNNIPSYIKDIFENGLPAD 235

Query: 154 FTLIAATTRVG-LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIA 212
           F LI ATTR    +T  L+ R            E++K I     K     + +EA   I+
Sbjct: 236 FRLIGATTRSPEEITPALRSRCVEVFFRALL-PEEIKKIAMNAIKKLNFTIEEEACELIS 294

Query: 213 MRSRG 217
                
Sbjct: 295 KYCSN 299


>gi|290891886|ref|ZP_06554883.1| dnaX protein [Listeria monocytogenes FSL J2-071]
 gi|290558480|gb|EFD91997.1| dnaX protein [Listeria monocytogenes FSL J2-071]
          Length = 580

 Score = 72.8 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 81/230 (35%), Gaps = 21/230 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RP++ ++  GQ      LK  I     + +     LF GP G GKT+ A++ A+
Sbjct: 5   ALYRVFRPQSFQDVVGQEHVTKTLKNAI----VQNKTSHAYLFSGPRGTGKTSAAKIFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +         P      ++    T+    DVL ID      +  +  I E++ Y     
Sbjct: 61  AINCEHGHDGEPCNEC--EICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYAPTVA 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT    L   +  R         
Sbjct: 119 KYKVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRI 178

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
              + +   ++   +   +   ++A   +A  + G  R A  LL +V  +
Sbjct: 179 TTQDIIGR-LKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISY 227


>gi|312135789|ref|YP_004003127.1| DNA polymerase III subunits gamma and tau [Caldicellulosiruptor
           owensensis OL]
 gi|311775840|gb|ADQ05327.1| DNA polymerase III, subunits gamma and tau [Caldicellulosiruptor
           owensensis OL]
          Length = 534

 Score = 72.8 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 89/234 (38%), Gaps = 21/234 (8%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP+  E+   Q      LK  I+  K         +F GP G GKTT A++++R
Sbjct: 4   ALYRKYRPKVFEDVVAQDHITKTLKNQIKQDKVAHAY----IFCGPRGTGKTTTAKIMSR 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII-----VEEILYPAMED 131
            +         P      D+   + + +  DVL ID     S+       +E+ YP    
Sbjct: 60  AVNCLNLKDGNPCNEC--DVCKSILDEKTLDVLEIDAASNTSVNDVRQIRDEVRYPPSVC 117

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
            +   ++ E             ++++        I ATT +  +   +  R         
Sbjct: 118 RKKVYIIDEVHMLSTGAFNALLKTLEEPPEHALFILATTDIQKVPATILSRCQ-RFDFKR 176

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
             ++D+   +++  ++  +++ D A   IA ++ G  R A  +L R  + ++  
Sbjct: 177 ISVKDIYERLKKIVQIENISIDDNALYLIAQKAEGALRDALTILERCMNTSDEH 230


>gi|217966098|ref|YP_002351776.1| DNA polymerase III subunit gamma/tau [Listeria monocytogenes HCC23]
 gi|217335368|gb|ACK41162.1| DNA polymerase III subunit gamma/tau [Listeria monocytogenes HCC23]
 gi|307572292|emb|CAR85471.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes
           L99]
          Length = 580

 Score = 72.8 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 81/230 (35%), Gaps = 21/230 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RP++ ++  GQ      LK  I     + +     LF GP G GKT+ A++ A+
Sbjct: 5   ALYRVFRPQSFQDVVGQEHVTKTLKNAI----VQNKTSHAYLFSGPRGTGKTSAAKIFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +         P      ++    T+    DVL ID      +  +  I E++ Y     
Sbjct: 61  AINCEHGHDGEPCNEC--EICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYAPTVA 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT    L   +  R         
Sbjct: 119 KYKVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRI 178

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
              + +   ++   +   +   ++A   +A  + G  R A  LL +V  +
Sbjct: 179 TTQDIIGR-LKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISY 227


>gi|221218167|ref|ZP_03589633.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi
           72a]
 gi|225549648|ref|ZP_03770614.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi
           118a]
 gi|221192115|gb|EEE18336.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi
           72a]
 gi|225369925|gb|EEG99372.1| DNA polymerase III, subunits gamma and tau [Borrelia burgdorferi
           118a]
          Length = 560

 Score = 72.8 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 88/230 (38%), Gaps = 25/230 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPR      GQ      LK  IE  K         +F GP G+GKT+ A+  AR L    
Sbjct: 12  RPRDFNSLEGQDFVVETLKHSIEKNKIANAY----IFSGPRGVGKTSSARAFARCLNCR- 66

Query: 83  RSTSGPVIAKAGDLA--ALLTNLEDRDVLFIDEIHRLSII-----VEEILYPAMEDFQLD 135
              +GP +   G+ +    + N    DV+ ID     S+       EEI++P        
Sbjct: 67  ---NGPTVMPCGECSNCKSIENDSSLDVVEIDGASNTSVQDIRQIKEEIMFPPAISKYRI 123

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             ++++   +    I ATT    L   ++ R           ++
Sbjct: 124 YIIDEVHMLSNSAFNALLKTIEEPPNYIVFIFATTESHKLPETIKSRCQ-HFSFKLLSLD 182

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
            +  ++++      +   DEA   IA +S G+ R A  L  ++  F++  
Sbjct: 183 KIYNMLKKVCLEDDIKYEDEALKWIAYKSSGSVRDAYTLFDQIVSFSDSN 232


>gi|253681306|ref|ZP_04862104.1| ATP-dependent protease, Lon family [Clostridium botulinum D str.
           1873]
 gi|253562544|gb|EES91995.1| ATP-dependent protease, Lon family [Clostridium botulinum D str.
           1873]
          Length = 635

 Score = 72.8 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 58/261 (22%), Positives = 97/261 (37%), Gaps = 57/261 (21%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +  +S+LRP++  E  GQ  A  +L      +K  +    H++  GPPG+GKTT A++  
Sbjct: 163 NNILSMLRPKSFSEIVGQERAIKSL-----VSKLASPYPQHIILYGPPGVGKTTAARLAL 217

Query: 76  RELG----------------------VNFRSTSGPVIAKA---------GDLAAL----- 99
            E+                        + R  + P++             DLA +     
Sbjct: 218 EEVKKINHTPFDEDGKFVEVDGTTLRWDPREITNPLLGSVHDPIYQGSKRDLAEIGVPEP 277

Query: 100 ----LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL----------DLMVGEGPSAR 145
               +T      VLFIDEI  L  I++  L   +ED ++          D  + +     
Sbjct: 278 KPGLVTEAHGG-VLFIDEIGELDDILQNKLLKVLEDKRVEFSSSYYDPDDENIPKYIKYL 336

Query: 146 SVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTD 205
                 + F LI ATTR     NP        +       +D++ IV+  +    + + D
Sbjct: 337 FENGAPADFVLIGATTREPKDINPALRSRCTEVYFEPLSSKDVEDIVEDASARLNIKLED 396

Query: 206 EAACEIAMRSRGTPRIAGRLL 226
             +  I+  +    R A  LL
Sbjct: 397 GVSALISKYT-IEGRKAVNLL 416


>gi|224534688|ref|ZP_03675260.1| DNA polymerase III, subunits gamma and tau [Borrelia spielmanii
           A14S]
 gi|224513936|gb|EEF84258.1| DNA polymerase III, subunits gamma and tau [Borrelia spielmanii
           A14S]
          Length = 561

 Score = 72.8 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 54/226 (23%), Positives = 85/226 (37%), Gaps = 25/226 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPR      GQ      LK  IE  K         +F GP G+GKT+ A+  AR L    
Sbjct: 12  RPRDFNSLEGQDFVVETLKHSIEKNKIANAY----IFSGPRGVGKTSSARAFARCLNCK- 66

Query: 83  RSTSGPVIAKAGDLA--ALLTNLEDRDVLFIDEIHRLSII-----VEEILYPAMEDFQLD 135
              +GP +   G+      + +    DV+ ID     S+       EEI++P        
Sbjct: 67  ---NGPAVMPCGECNNCKSIDSDSSLDVIEIDGASNTSVQDIRQIKEEIMFPPAISKYRI 123

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             ++++   S    I ATT    L   ++ R           +E
Sbjct: 124 YIIDEVHMLSNSAFNALLKTIEEPPSYIVFIFATTESHKLPETIKSRCQ-HFSFKLLSLE 182

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
            +  ++++      +   DEA   IA +S G+ R A  L  +V  F
Sbjct: 183 KIYNMLKKVCFEDHIKYEDEALKWIAYKSGGSVRDAYTLFDQVVSF 228


>gi|114647197|ref|XP_001156346.1| PREDICTED: replication factor C 5 isoform 2 [Pan troglodytes]
          Length = 341

 Score = 72.8 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 74/226 (32%), Gaps = 39/226 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA- 75
             +   RP+TL +     +  S ++ FI       + L H+L  GPPG GKT+     A 
Sbjct: 21  PWVEKYRPQTLNDLISHQDILSTIQKFI-----NEDRLPHLLLYGPPGTGKTSTILACAK 75

Query: 76  -----RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLF---------IDEIHRLSIIV 121
                +E G      +         +   + +  +  + F         +DE   ++   
Sbjct: 76  QLYKDKEFGSMVLELNASDDRGIDIVRGPILSFANSTICFSRKGFKLVILDEADAMTQDA 135

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           +  L   +E F       E      +   LS+                LQ R     R  
Sbjct: 136 QNALRRVIEKF------TENTRFCLICNYLSKIIP------------ALQSRC-TRFRFG 176

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
               E +   ++   +   + ++++    +   S G  R A  +L+
Sbjct: 177 PLTPELMVPRLEHVVEEEKVGISEDGMKALVTLSSGDMRRALNILQ 222


>gi|307717518|gb|ADN88812.1| recombination factor protein [Listeria innocua]
          Length = 191

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 45/202 (22%), Positives = 81/202 (40%), Gaps = 17/202 (8%)

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           G+GKT++A  +A      FR+ +     K   ++ A    +    +L +DE+HRL    +
Sbjct: 1   GIGKTSIASAIAGSTKYAFRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQ 60

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           + L P +E   + +++G   S   + IN +    I + T++  L     +   I      
Sbjct: 61  DFLLPLLESGAI-ILIGATTSNPYIAINPA----IRSRTQIFELKPLTVEDIMI------ 109

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT-- 240
             ++      +RG     + + + A    A  S G  R A   L      +E        
Sbjct: 110 -TMDRALRDKERGLGNYEVEIDEFAKKHFATASNGDVRSALNALELAVISSEPNEDGIIH 168

Query: 241 ITREIADAALLRL--AIDKMGF 260
           IT ++A+  L +   A DK G 
Sbjct: 169 ITLDVAEECLQKKSLAHDKDGD 190


>gi|48477659|ref|YP_023365.1| replication factor C small subunit [Picrophilus torridus DSM 9790]
 gi|50400868|sp|Q6L1I0|RFCS_PICTO RecName: Full=Replication factor C small subunit; Short=RFC small
           subunit; AltName: Full=Clamp loader small subunit
 gi|48430307|gb|AAT43172.1| replication factor C, small subunit [Picrophilus torridus DSM 9790]
          Length = 318

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 49/238 (20%), Positives = 90/238 (37%), Gaps = 37/238 (15%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +      RP+ L++  G+ E  + LK F++        L H++F GP G GKT+ A  + 
Sbjct: 3   NIWTEKYRPKRLDDVIGEDENINTLKSFVK-----NGDLPHLIFAGPAGTGKTSTAIALT 57

Query: 76  RE-----LGVNFRSTSGPVIAK-------AGDLAALL-TNLEDRDVLFIDEIHRLSIIVE 122
            E        NF   +               D A +  +N     ++F+DE  +L+   +
Sbjct: 58  IELFGDDWKENFLELNASDERGIDIIRNNIKDFAKIRPSNKLGFKIIFLDEADQLTNEAQ 117

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             L   ME F                   S    I +      +  P+Q R  + +R   
Sbjct: 118 AALRRTMEMFY------------------STTRFIFSCNYSSKIIPPIQSRC-VVLRFRP 158

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            + E ++  ++  AK     + D++   I   S G  R A  +++ ++   E+  +K 
Sbjct: 159 LDKEAMERKLREIAKNEKFDIDDDSLDAIYEISDGDMRKAINVMQAIQSTGEIKPSKI 216


>gi|218283247|ref|ZP_03489308.1| hypothetical protein EUBIFOR_01896 [Eubacterium biforme DSM 3989]
 gi|218216002|gb|EEC89540.1| hypothetical protein EUBIFOR_01896 [Eubacterium biforme DSM 3989]
          Length = 587

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 83/234 (35%), Gaps = 22/234 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP   +E  GQ      LK  I     +       LF GP G GKT++A++ A+
Sbjct: 5   ALYRKYRPSNFDEVVGQTHIIQTLKNAI----IQNRIAHAYLFCGPRGTGKTSIAKIFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            L     + S        +   +  N    D++ ID      +  +  +++++ Y  M+ 
Sbjct: 61  TLNC---TNSQDAPCGVCENCKMAANGSHPDIIEIDAASNNGVDEVRNLIDKVKYAPMQG 117

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++   +    I ATT    +   +  R       N 
Sbjct: 118 KYKIYIIDEVHMMTSGAFNALLKTIEEPPAHVIFIFATTEPNKVLPTIISRCQ-RFDFNK 176

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
             + D+K  +    K  G+ +  +    IA  + G  R A  +L +   +    
Sbjct: 177 VSVNDIKYRLSVVCKNEGIEIDQDGLTLIAQLADGGMRDALSILDQCVAYCTSH 230


>gi|309811747|ref|ZP_07705524.1| DNA polymerase III, subunit gamma and tau [Dermacoccus sp.
           Ellin185]
 gi|308434293|gb|EFP58148.1| DNA polymerase III, subunit gamma and tau [Dermacoccus sp.
           Ellin185]
          Length = 893

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 59/307 (19%), Positives = 99/307 (32%), Gaps = 41/307 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T  +  GQ      L   +   +         LF GP G GKTT A+++AR
Sbjct: 14  ALYRRYRPETFADVIGQEHVTEPLMQALRTGRVNHAY----LFSGPRGCGKTTSARILAR 69

Query: 77  ELGVNFRSTSGPVIAKAGD--LAALLTNLEDRDVLFIDEIHRLSIIVE------EILYPA 128
              +N      P      D  +A         DV+ ID      +             PA
Sbjct: 70  --CLNCEQGPTPTPCGVCDSCVALARGGAGSVDVIEIDAASHGGVDDARDLRERASFGPA 127

Query: 129 MEDFQLDLMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
              +++ ++         G     + V+        + ATT    +   ++ R       
Sbjct: 128 SSRYKIYIIDEAHMVTPQGFNALLKIVEEPPEHVKFVFATTEPEKVIGTIRSR-THHYPF 186

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
                + L   ++      G+A        +     G+ R +  +L ++     +A +  
Sbjct: 187 RLVPPKKLSDYMETLLDAEGVAYEPGVLSFVTRAGGGSVRDSLSVLDQL-----IAGSGP 241

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVG-----IETISAGLSEPRDA 295
                A AA        +GF   D   L  I   F  G        I+ +    ++PR  
Sbjct: 242 EGLTYAGAA------SLLGF--TDDELLDGIIEAFAAGDSAAVFRQIDRVVESGADPRRF 293

Query: 296 IEDLIEP 302
           +EDL+E 
Sbjct: 294 VEDLLER 300


>gi|255527671|ref|ZP_05394530.1| Sigma 54 interacting domain protein [Clostridium carboxidivorans
           P7]
 gi|296186812|ref|ZP_06855213.1| ATP-dependent protease, Lon family [Clostridium carboxidivorans P7]
 gi|255508651|gb|EET85032.1| Sigma 54 interacting domain protein [Clostridium carboxidivorans
           P7]
 gi|296048526|gb|EFG87959.1| ATP-dependent protease, Lon family [Clostridium carboxidivorans P7]
          Length = 638

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 60/286 (20%), Positives = 99/286 (34%), Gaps = 58/286 (20%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            +L  N   ++   S+LRP    E  GQ  A  ++      +K  +    H++  GPPG+
Sbjct: 150 EVLDSNKLSKNIQ-SILRPGCFSEIVGQERAIKSI-----LSKLASPYPQHIILYGPPGV 203

Query: 66  GKTTLAQVVARELG----------------------VNFRSTSGPVIAKA---------G 94
           GKTT A++   E+                        + R  + P++             
Sbjct: 204 GKTTAARLALEEVKKLQYTPFEESAKFVEVDGTTLRWDPREITNPLLGSVHDPIYQGTKR 263

Query: 95  DLAA---------LLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV-----GE 140
           DLA          L+T      +LFIDEI  L  +++  L   +ED +++         +
Sbjct: 264 DLAETGTPEPKPGLVTEAHGG-ILFIDEIGELDEMLQNKLLKVLEDKRVEFSSSYYDPDD 322

Query: 141 GPSARSVKINLSR-----FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
             + + +K          F LI ATTR     NP        +        D+K IV+  
Sbjct: 323 ESTPKYIKYLFENGAPADFILIGATTREPNEINPALRSRCTEVYFEPLSSSDIKKIVENA 382

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           A    + + +    E   R     R A  +L     +       T 
Sbjct: 383 ANKIDINLEE-GVAETISRYTIEGRKAVNILADAYGYVLYNQKGTD 427


>gi|216263439|ref|ZP_03435434.1| DNA polymerase III, subunits gamma and tau [Borrelia afzelii ACA-1]
 gi|215980283|gb|EEC21104.1| DNA polymerase III, subunits gamma and tau [Borrelia afzelii ACA-1]
          Length = 566

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 53/226 (23%), Positives = 86/226 (38%), Gaps = 25/226 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPR      GQ      LK  IE  K         +F GP G+GKT+ A+  AR L    
Sbjct: 12  RPRDFNSLEGQDFVVETLKHSIEKNKIANAY----IFSGPRGVGKTSSARAFARCLNCK- 66

Query: 83  RSTSGPVIAKAGDLA--ALLTNLEDRDVLFIDEIHRLSII-----VEEILYPAMEDFQLD 135
              +GP +   G+ +    + +    DV+ ID     S+       EEI++P        
Sbjct: 67  ---NGPTVMPCGECSNCKSIESDSSLDVIEIDGASNTSVQDIRQIKEEIMFPPAISKYRI 123

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             ++++   +    I ATT    L   ++ R           +E
Sbjct: 124 YIIDEVHMLSNSAFNALLKTIEEPPNYIVFIFATTESHKLPETIKSRCQ-HFSFKLLSLE 182

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
            +  ++++      +   DEA   IA +S G+ R A  L  +V  F
Sbjct: 183 KIYNMLKKVCFEDHIKYEDEALKWIAYKSSGSVRDAYTLFDQVVSF 228


>gi|332665533|ref|YP_004448321.1| DNA polymerase III subunits gamma and tau [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332334347|gb|AEE51448.1| DNA polymerase III, subunits gamma and tau [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 589

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 81/230 (35%), Gaps = 22/230 (9%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH-VLFVGPPGLGKTTLAQVVARE 77
               RP T E+  GQ    + LK  +     R + L H  LF GP G+GKTT A+++A+ 
Sbjct: 8   ARKYRPVTFEDVVGQEHVTNTLKNAL-----RNDHLAHAFLFCGPRGVGKTTCARILAKV 62

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII------VEEILYPAMED 131
           +     S             +   N     +  +D     S+        +    P    
Sbjct: 63  INCQNPSPELEPCNTCSSCTSFNDNASFN-ISELDAASNNSVEHIRALIEQVRFQPQQGK 121

Query: 132 FQLDLMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +++ ++               ++++   S    I ATT    +   +  R  I       
Sbjct: 122 YKVFIIDEVHMLSQQAFNAFLKTLEEPPSYAIFILATTEKHKIIPTILSRCQIFDFKRI- 180

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
           +   +   +Q  +    +   +EA   IA ++ G  R A  +  R+  ++
Sbjct: 181 QAPAMVRHLQGISTKENITANEEALHVIAQKADGALRDALSIFDRIVSYS 230


>gi|110803598|ref|YP_698702.1| ATP-dependent protease LonB [Clostridium perfringens SM101]
 gi|110684099|gb|ABG87469.1| ATP-dependent protease LonB [Clostridium perfringens SM101]
          Length = 570

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 66/330 (20%), Positives = 108/330 (32%), Gaps = 64/330 (19%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP  LEE  GQ +    LK     A        HV+  GPPG+GKT  A+++  E     
Sbjct: 64  RPSNLEEIIGQEKGIKALK-----AALCGPNPQHVIIYGPPGVGKTAAARIILEEAKKMA 118

Query: 83  RSTSG------------------------------PVIAKAGDLA---------ALLTNL 103
            S                                 P+   AG L            +T  
Sbjct: 119 ASPFNKDSKFVEIDATTLRFDERGIADPLIGSVHDPIYQGAGSLGIAGVPQPKPGAVTKA 178

Query: 104 EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL----MVGEGPSARSV------KINLSR 153
               +LFIDEI  L  I    L   +ED ++ L       E P+              + 
Sbjct: 179 HGG-ILFIDEIGELHPIELNKLLKVLEDRKVFLDSAYYSSEDPNTPRYIKEIFDNGLPAD 237

Query: 154 FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAM 213
           F LI ATTR      P      + I      +E+++ I        G  ++DE    ++ 
Sbjct: 238 FRLIGATTRSPEEIVPAIRSRCVEIFFRGLTVEEIRKIALNATNKVGYRISDEGLDIVSR 297

Query: 214 RSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA-----IDKMGFDQLDLRYL 268
                  +    L ++     +   +   +E     ++        +++M  D+ ++ Y+
Sbjct: 298 YCTNGREVIN--LVQLCSGLAINENRDYIKENDIYWVIENGQYNPRMERMINDKPEIGYV 355

Query: 269 TMIARNF--GGGPVGIETISAGLSEPRDAI 296
             +A      G  + IE  +   S    +I
Sbjct: 356 NGLAVYGANNGALMEIEATAKLSSNSIGSI 385


>gi|254567680|ref|XP_002490950.1| Subunit of heteropentameric Replication factor C (RF-C), which is a
           DNA binding protein and ATPase t [Pichia pastoris GS115]
 gi|238030747|emb|CAY68670.1| Subunit of heteropentameric Replication factor C (RF-C), which is a
           DNA binding protein and ATPase t [Pichia pastoris GS115]
 gi|328352517|emb|CCA38916.1| replication factor C subunit 3/5 [Pichia pastoris CBS 7435]
          Length = 332

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 80/219 (36%), Gaps = 23/219 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP +L+   GQ +    ++ F++  +     L H+LF GPPG GKT+    +A+
Sbjct: 13  PWVEKYRPSSLDYVYGQHDTVDTVRKFVQDGR-----LPHLLFYGPPGTGKTSTIMALAK 67

Query: 77  E-LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFI-DEIHRLSIIVE----EILYPAME 130
           E  G N+R+               L   +DR +  + D+I   +   +          ++
Sbjct: 68  EIYGKNYRNMVLE-----------LNASDDRGISVVRDQIVNFASTRQIFSNGFKLIILD 116

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           +      V +    R ++                 L   L  R     R      E ++ 
Sbjct: 117 EADAMTNVAQNALRRVIEKFTKNTRFCVLANYAHKLNPALLSRC-TRFRFQPISQEAIQL 175

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
            +    K  G+ + D+A   +   S+G  R A  +L+  
Sbjct: 176 RINDVIKQEGINIDDDALQSLLKLSKGDMRKALNVLQAC 214


>gi|169342287|ref|ZP_02863365.1| ATP-dependent protease LonB [Clostridium perfringens C str.
           JGS1495]
 gi|169299614|gb|EDS81673.1| ATP-dependent protease LonB [Clostridium perfringens C str.
           JGS1495]
          Length = 570

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 66/330 (20%), Positives = 108/330 (32%), Gaps = 64/330 (19%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP  LEE  GQ +    LK     A        HV+  GPPG+GKT  A+++  E     
Sbjct: 64  RPSNLEEIIGQEKGIKALK-----AALCGPNPQHVIIYGPPGVGKTAAARIILEEAKKMA 118

Query: 83  RSTSG------------------------------PVIAKAGDLA---------ALLTNL 103
            S                                 P+   AG L            +T  
Sbjct: 119 ASPFNKDSKFVEIDATTLRFDERGIADPLIGSVHDPIYQGAGSLGIAGVPQPKPGAVTKA 178

Query: 104 EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL----MVGEGPSARSV------KINLSR 153
               +LFIDEI  L  I    L   +ED ++ L       E P+              + 
Sbjct: 179 HGG-ILFIDEIGELHPIELNKLLKVLEDRKVFLDSAYYSSEDPNTPRYIKEIFDNGLPAD 237

Query: 154 FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAM 213
           F LI ATTR      P      + I      +E+++ I        G  ++DE    ++ 
Sbjct: 238 FRLIGATTRSPEEIVPAIRSRCVEIFFRGLTVEEIRKIALNATNKVGYRISDEGLDIVSR 297

Query: 214 RSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA-----IDKMGFDQLDLRYL 268
                  +    L ++     +   +   +E     ++        +++M  D+ ++ Y+
Sbjct: 298 YCTNGREVIN--LVQLCSGLAINENRDYIKESDIYWVIENGQYNPRMERMINDKPEIGYV 355

Query: 269 TMIARNF--GGGPVGIETISAGLSEPRDAI 296
             +A      G  + IE  +   S    +I
Sbjct: 356 NGLAVYGANNGALMEIEATAKLSSNSIGSI 385


>gi|72398637|gb|AAZ72732.1| ATP-dependent protease [Bacillus thuringiensis serovar kurstaki]
          Length = 556

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 55/289 (19%), Positives = 98/289 (33%), Gaps = 57/289 (19%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           R  S  +     +RP T  +  GQ +   +LK     A        HV+  G PG+GKT 
Sbjct: 51  RETSLTEPLAEKVRPTTFLDIVGQEDGIKSLK-----AALCGPNPQHVIIYGSPGVGKTA 105

Query: 70  LAQVVARELGVNFRSTS----------------------GPVIAKAGD------------ 95
            A++V  E   N +S                         P+I    D            
Sbjct: 106 AARLVLEEAKRNPKSPFRTNATFIELDATTARFDERGIADPLIGSVHDPIYQGAGAMGQA 165

Query: 96  -----LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL----MVGEGPSARS 146
                    +T+     +LFIDEI  L  I    +   +ED ++ L       E     +
Sbjct: 166 GIPQPKKGAVTDAHGG-ILFIDEIGELHPIQMNKMLKVLEDRKVFLESAYYSEENTMIPT 224

Query: 147 VKINL------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
              ++      + F L+ ATTR      P      + +     + E+++ + +  A+   
Sbjct: 225 YIHDIFQKGLPADFRLVGATTRSPEEIPPAIRSRCLEVFSRELDTEEIQKVAKNAAEKVE 284

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
           + + +     I M +R   R A  L++     A +   ++  ++     
Sbjct: 285 MQIGENGIEMIGMYARN-GREAINLVQISAGMA-INEERSFIKDEDIEW 331


>gi|315303267|ref|ZP_07873910.1| recombination factor protein RarA [Listeria ivanovii FSL F6-596]
 gi|313628363|gb|EFR96853.1| recombination factor protein RarA [Listeria ivanovii FSL F6-596]
          Length = 338

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 47/235 (20%), Positives = 93/235 (39%), Gaps = 34/235 (14%)

Query: 103 LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTR 162
           +    +L +DE+HRL  + ++ L P +E   + +++G   S   + IN +    I + T+
Sbjct: 1   MSGTVILLLDEVHRLDKVKQDFLLPLLESGAI-ILIGATTSNPYIAINPA----IRSRTQ 55

Query: 163 VGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
           +  L     +   I +     + +       RG     + +   A    A  S G  R A
Sbjct: 56  IFELKPLTVEDIMITMDRALADKD-------RGLGNYQVEINALAKKHFATASNGDVRSA 108

Query: 223 GRLLRRVRDFAEVAHAKT--ITREIADAALLRL--AIDKMGFDQLDLRYLTMIARNFGGG 278
              L      +E        +T ++A+  L +   A DK G    D+  L+   ++  G 
Sbjct: 109 LNALELAVISSESDEDGIVRVTLDVAEECLQKKSLAHDKDGDAHYDV--LSAFQKSVRG- 165

Query: 279 PVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
                      S+   A+  +    +I+ G +    R R+L+ +A++ +G+  P 
Sbjct: 166 -----------SDANAALHYMGR--LIEAGDLVSISR-RMLV-MAYEDIGLANPQ 205


>gi|317126764|ref|YP_004093046.1| DNA polymerase III subunits gamma and tau [Bacillus
           cellulosilyticus DSM 2522]
 gi|315471712|gb|ADU28315.1| DNA polymerase III, subunits gamma and tau [Bacillus
           cellulosilyticus DSM 2522]
          Length = 574

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 50/234 (21%), Positives = 85/234 (36%), Gaps = 37/234 (15%)

Query: 23  RPRTLEEFTGQVEACSNLK-VFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGV 80
           RP  L +  GQ      LK   IE      E L H  LF GP G GKT+ A+++++ +  
Sbjct: 11  RPTCLSDVVGQEHITKTLKNALIE------EKLSHAYLFTGPRGTGKTSAAKIISKAINC 64

Query: 81  NFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA------------ 128
                  PV     + AA    + D  ++ + EI   S    + +               
Sbjct: 65  EH----APVTEPCNECAAC-KGISDGTIVDVMEIDAASNNGVDEIRDIRDKVKFAPSAVK 119

Query: 129 MEDFQLDLMVGEGPSA-----RSVKINLSRFTLIAATTRVGLLTNPLQD---RFGIPIRL 180
            + + +D +      A     ++++        I ATT    +   +     RF      
Sbjct: 120 YKVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKIPLTIISRCQRFDFKRIS 179

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
               I+ ++ I++       + V + A   IA  S G  R A  LL +   +A+
Sbjct: 180 AQAMIDRMREIIEAS----HVHVEEAALSLIARASEGGMRDALSLLDQAISYAD 229


>gi|18310373|ref|NP_562307.1| Lon-like ATP-dependent protease [Clostridium perfringens str. 13]
 gi|18145053|dbj|BAB81097.1| Lon-like ATP-dependent protease [Clostridium perfringens str. 13]
          Length = 570

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 66/330 (20%), Positives = 108/330 (32%), Gaps = 64/330 (19%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP  LEE  GQ +    LK     A        HV+  GPPG+GKT  A+++  E     
Sbjct: 64  RPSNLEEIIGQEKGIKALK-----AALCGPNPQHVIIYGPPGVGKTAAARIILEEAKKMA 118

Query: 83  RSTSG------------------------------PVIAKAGDLA---------ALLTNL 103
            S                                 P+   AG L            +T  
Sbjct: 119 ASPFNKDSKFVEIDATTLRFDERGIADPLIGSVHDPIYQGAGSLGIAGVPQPKPGAVTKA 178

Query: 104 EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL----MVGEGPSARSV------KINLSR 153
               +LFIDEI  L  I    L   +ED ++ L       E P+              + 
Sbjct: 179 HGG-ILFIDEIGELHPIELNKLLKVLEDRKVFLDSAYYSSEDPNTPRYIKEIFDNGLPAD 237

Query: 154 FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAM 213
           F LI ATTR      P      + I      +E+++ I        G  ++DE    ++ 
Sbjct: 238 FRLIGATTRSPEEIVPAIRSRCVEIFFRGLTVEEIRKIALNATNKVGYRISDEGLDIVSR 297

Query: 214 RSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA-----IDKMGFDQLDLRYL 268
                  +    L ++     +   +   +E     ++        +++M  D+ ++ Y+
Sbjct: 298 YCTNGREVIN--LVQLCSGLAINENRDYIKESDIYWVIENGQYNPRMERMINDKPEIGYV 355

Query: 269 TMIARNF--GGGPVGIETISAGLSEPRDAI 296
             +A      G  + IE  +   S    +I
Sbjct: 356 NGLAVYGANNGALMEIEATAKLSSNSIGSI 385


>gi|302698263|ref|XP_003038810.1| hypothetical protein SCHCODRAFT_84256 [Schizophyllum commune H4-8]
 gi|300112507|gb|EFJ03908.1| hypothetical protein SCHCODRAFT_84256 [Schizophyllum commune H4-8]
          Length = 340

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 79/232 (34%), Gaps = 38/232 (16%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
            +   E   +   RP+ L++  G  +    LKV      AR     H++  G PG+GKTT
Sbjct: 13  ADAPYELPWVEKYRPQVLDDVVGNADTIDRLKVI-----ARDGNCPHIIISGMPGIGKTT 67

Query: 70  LAQVVAR------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIH 115
               +A             EL  +       V  K  + A     L      ++ +DE  
Sbjct: 68  SIHCLAHQLLGPAYKEGVLELNASDERGIDVVRNKIKNFAQKKVTLPPGRHKIIILDEAD 127

Query: 116 RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
            ++   ++ L   ME F                 N +RF    A      +  P+Q R  
Sbjct: 128 SMTAGAQQALRRTMEIFS----------------NTTRF--CLACNMSNKIIEPIQSRCA 169

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
           I       + E LK +++   +   +   D+    +   + G  R A   L+
Sbjct: 170 ILRYGKLKDQEILKRLLE-ICEAEKVEYNDDGLTALIFTAEGDMRQAINNLQ 220


>gi|170761612|ref|YP_001788549.1| ATP-dependent protease LonB [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169408601|gb|ACA57012.1| ATP-dependent protease LonB [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 559

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 57/245 (23%), Positives = 83/245 (33%), Gaps = 57/245 (23%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV-------- 74
           RP + +E  GQ      LK  I      +    HV+  GPPG GKT  A+++        
Sbjct: 62  RPSSFDEIIGQENGIKALKAAI-----CSPNPQHVIIYGPPGTGKTAAARLILEDAKKKE 116

Query: 75  --------------ARELGVNFRSTSGPVIAKAGD----------LAAL-------LTNL 103
                         A  +  + R  + P+I    D          LA +       +T  
Sbjct: 117 YSPFNQQSKFMEIDATTVRSDERGIADPLIGSVHDPIYQGAGALGLAGVPQPKPGAVTKA 176

Query: 104 EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG-EGPSARSV---------KINLSR 153
               VLFIDEI  L       L   +ED ++ L      PS  ++             + 
Sbjct: 177 HGG-VLFIDEIGELHPSEMNKLLKVLEDRKVFLDSAYYNPSDNNIPSYIKDIFENGLPAD 235

Query: 154 FTLIAATTRVG-LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIA 212
           F LI ATTR    +T  L+ R            E++K I     K     + +EA   I+
Sbjct: 236 FRLIGATTRSPEEITPALRSRCVEVFFRALL-PEEIKKIAMNAIKKLNFTIEEEACELIS 294

Query: 213 MRSRG 217
                
Sbjct: 295 KYCSN 299


>gi|168240315|ref|ZP_02665247.1| DNA polymerase III, tau subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|194450868|ref|YP_002044517.1| DNA polymerase III subunits gamma and tau [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194409172|gb|ACF69391.1| DNA polymerase III, tau subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|205339944|gb|EDZ26708.1| DNA polymerase III, tau subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
          Length = 642

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 52/306 (16%), Positives = 108/306 (35%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++   +    + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +A    A   ++  + G+ R A  L     D A  +    ++ +   A
Sbjct: 184 RHQLEHILNEEHIAHEPRALQLLSRAADGSLRDALSL----TDQAIASGDGQVSTQAVSA 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L  D+       L  +  +    G   + +   +A      +A+   +   + +  
Sbjct: 240 MLGTLDDDQA------LSLVEAVVDANGERVMSLINEAAARGIEWEALLVEMLSLLHRIA 293

Query: 309 FIQRTP 314
            +Q +P
Sbjct: 294 MVQLSP 299


>gi|124027779|ref|YP_001013099.1| replication factor C large subunit [Hyperthermus butylicus DSM
           5456]
 gi|150415659|sp|A2BL93|RFCL_HYPBU RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|123978473|gb|ABM80754.1| Replication factor C large subunit [Hyperthermus butylicus DSM
           5456]
          Length = 484

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 84/229 (36%), Gaps = 25/229 (10%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAA-KARAEALDHVLFVGPPGLGKTTL 70
           +S +   I   RP+ +E+   Q EA      ++ +  + R       LF GP G+GKT+L
Sbjct: 1   MSDKLPWIIKYRPKRVEDVVDQEEAKKLFLPWLRSWLQGRIPERKAALFYGPAGVGKTSL 60

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------EDRDVLFIDEIHRLSIIVE 122
            +  A E G+     +     +  D+  +              R ++ +DE+  +S   +
Sbjct: 61  VEAAANEYGLELIEMNASDFRRKSDIERIAKIAATQFSLFGRKRKIILLDEVDGISGTAD 120

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                A+ +    + + + P   +            A         PL+D   + +    
Sbjct: 121 RGGLDAILE---LINITKHPIVMT------------ANDPWDQKLKPLRDAS-LMVPFYR 164

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
                +  +++R      +   DEA   IA R+ G  R A   L+ + +
Sbjct: 165 LSERYVVQVLKRICAAENIECEDEALKLIAQRAEGDLRSAINDLQAIAE 213


>gi|111115291|ref|YP_709909.1| DNA polymerase III subunits gamma and tau [Borrelia afzelii PKo]
 gi|110890565|gb|ABH01733.1| DNA polymerase III, subunits gamma and tau [Borrelia afzelii PKo]
          Length = 566

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 53/226 (23%), Positives = 86/226 (38%), Gaps = 25/226 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPR      GQ      LK  IE  K         +F GP G+GKT+ A+  AR L    
Sbjct: 12  RPRDFNSLEGQDFVVETLKHSIEKNKIANAY----IFSGPRGVGKTSSARAFARCLNCK- 66

Query: 83  RSTSGPVIAKAGDLA--ALLTNLEDRDVLFIDEIHRLSII-----VEEILYPAMEDFQLD 135
              +GP +   G+ +    + +    DV+ ID     S+       EEI++P        
Sbjct: 67  ---NGPTVMPCGECSNCKSIESDSSLDVIEIDGASNTSVQDIRQIKEEIMFPPAISKYRI 123

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             ++++   +    I ATT    L   ++ R           +E
Sbjct: 124 YIIDEVHMLSNSAFNALLKTIEEPPNYIVFIFATTESHKLPETIKSRCQ-HFSFKLLSLE 182

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
            +  ++++      +   DEA   IA +S G+ R A  L  +V  F
Sbjct: 183 KIYNMLKKVCFEDHIKYEDEALKWIAYKSSGSVRDAYTLFDQVVSF 228


>gi|16759463|ref|NP_455080.1| DNA polymerase III subunits gamma and tau [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|29142765|ref|NP_806107.1| DNA polymerase III subunits gamma and tau [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|213162890|ref|ZP_03348600.1| DNA polymerase III subunits gamma and tau [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
 gi|213427143|ref|ZP_03359893.1| DNA polymerase III subunits gamma and tau [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|213865424|ref|ZP_03387543.1| DNA polymerase III subunits gamma and tau [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
 gi|25288577|pir||AG0562 DNA polymerase III chains gamma and tau [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16501755|emb|CAD04969.1| DNA polymerase III subunits gamma and tau [Salmonella enterica
           subsp. enterica serovar Typhi]
 gi|29138397|gb|AAO69967.1| DNA polymerase III subunits gamma and tau [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
          Length = 642

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 52/306 (16%), Positives = 108/306 (35%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++   +    + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +A    A   ++  + G+ R A  L     D A  +    ++ +   A
Sbjct: 184 RHQLEHILNEEHIAHEPRALQLLSRAADGSLRDALSL----TDQAIASGDGQVSTQAVSA 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L  D+       L  +  +    G   + +   +A      +A+   +   + +  
Sbjct: 240 MLGTLDDDQA------LSLVEAVVDANGERVMSLINEAAARGIEWEALLVEMLSLLHRIA 293

Query: 309 FIQRTP 314
            +Q +P
Sbjct: 294 MVQLSP 299


>gi|288931073|ref|YP_003435133.1| ATPase AAA [Ferroglobus placidus DSM 10642]
 gi|288893321|gb|ADC64858.1| AAA ATPase central domain protein [Ferroglobus placidus DSM 10642]
          Length = 352

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 56/243 (23%), Positives = 98/243 (40%), Gaps = 23/243 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE----ALDHVLFVGPPGLGKTTLAQVVARELGVN 81
            L++  GQ EA    ++ +E  K   +    A  +VLF GPPG GKT +A+ +A E  V 
Sbjct: 103 KLDDVVGQEEAKRKARIILEYLKNPEKFGKWAPKNVLFYGPPGTGKTMMAKALANEAKVP 162

Query: 82  FRSTSGPVI--AKAGDLAALLTNLEDRD------VLFIDEIH--RLSIIVEEILYPAMED 131
           F S     +     G+ A  +  L +R       ++F+DE     L    +++     E 
Sbjct: 163 FLSVKSTRLIGEHVGEGARKIHELYERAKQIAPCIVFLDEFDSIALDRSYQDLRGDVSEI 222

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
               L   +G   R           IAAT R+  L   ++ RF   I      IE+ + I
Sbjct: 223 VNALLTELDGIERREG------ICTIAATNRIEFLDPSIRSRFEEEIEFTLPGIEERREI 276

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTP--RIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            +R  +   L   +    E+A  + G     +  ++++     A +   + +T +    A
Sbjct: 277 FERNLRDFPLK-VEVNLDEVAKATEGLSGRDLVEKVIKSSLHRAIIEGREVVTTKDMLDA 335

Query: 250 LLR 252
           + +
Sbjct: 336 ISK 338


>gi|213418060|ref|ZP_03351135.1| DNA polymerase III subunits gamma and tau [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
          Length = 314

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 52/306 (16%), Positives = 108/306 (35%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 18  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 71

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 72  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 131

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++   +    + ATT    L   +  R  +   L   ++E +
Sbjct: 132 IDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 190

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +A    A   ++  + G+ R A  L     D A  +    ++ +   A
Sbjct: 191 RHQLEHILNEEHIAHEPRALQLLSRAADGSLRDALSL----TDQAIASGDGQVSTQAVSA 246

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L  D+       L  +  +    G   + +   +A      +A+   +   + +  
Sbjct: 247 MLGTLDDDQA------LSLVEAVVDANGERVMSLINEAAARGIEWEALLVEMLSLLHRIA 300

Query: 309 FIQRTP 314
            +Q +P
Sbjct: 301 MVQLSP 306


>gi|182417603|ref|ZP_02948925.1| ATP-dependent protease LonB [Clostridium butyricum 5521]
 gi|237668963|ref|ZP_04528947.1| ATP-dependent protease LonB [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182378558|gb|EDT76087.1| ATP-dependent protease LonB [Clostridium butyricum 5521]
 gi|237657311|gb|EEP54867.1| ATP-dependent protease LonB [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 543

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 57/244 (23%), Positives = 82/244 (33%), Gaps = 55/244 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP T EE  GQ +    LK     A        HV+  GPPG+GKT  A++V  E     
Sbjct: 49  RPSTFEEVVGQEKGIKALK-----AALCGPNPQHVIIYGPPGVGKTAAARLVLEEAKRAM 103

Query: 83  RSTSGPVIAKAGDLAALLTNLEDR------------------------------------ 106
            S      AK  +L A     ++R                                    
Sbjct: 104 SSPF-KENAKFVELDATTLRFDERGIADPLIGSVHDPIYQGAGNFGIAGIPQPKPGAVTK 162

Query: 107 ---DVLFIDEIHRLSIIVEEILYPAMEDFQL----DLMVGEGPSAR-----SVKINLS-R 153
               +LF+DEI  L  I    L   +ED ++         E P+         +  L   
Sbjct: 163 AHGGILFLDEIGELHPIELNKLLKVLEDRKVFFDSSYYSSEDPNMPKYVKEVFENGLPAD 222

Query: 154 FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAM 213
           F LI ATTR      P      + I       +++KTI +   +  GL + + A  E++ 
Sbjct: 223 FRLIGATTRSPSEIMPAIRSRCVEIFFRALLPDEIKTIAKNSVEKVGLQIEENALDEVSN 282

Query: 214 RSRG 217
               
Sbjct: 283 YCTN 286


>gi|168237601|ref|ZP_02662659.1| DNA polymerase III, tau subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|194735928|ref|YP_002113515.1| DNA polymerase III subunits gamma and tau [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|194711430|gb|ACF90651.1| DNA polymerase III, tau subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197289588|gb|EDY28951.1| DNA polymerase III, tau subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
          Length = 642

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 52/306 (16%), Positives = 108/306 (35%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++   +    + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +A    A   ++  + G+ R A  L     D A  +    ++ +   A
Sbjct: 184 RHQLEHILNEEHIAHEPRALQLLSRAADGSLRDALSL----TDQAIASGDGQVSTQAVSA 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L  D+       L  +  +    G   + +   +A      +A+   +   + +  
Sbjct: 240 MLGTLDDDQA------LSLVEAVVDANGERVMSLINEAAARGIEWEALLVEMLSLLHRIA 293

Query: 309 FIQRTP 314
            +Q +P
Sbjct: 294 MVQLSP 299


>gi|167550989|ref|ZP_02344745.1| DNA polymerase III, tau subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|168231475|ref|ZP_02656533.1| DNA polymerase III, tau subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168261077|ref|ZP_02683050.1| DNA polymerase III, tau subunit [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|194471215|ref|ZP_03077199.1| DNA polymerase III, tau subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|197262082|ref|ZP_03162156.1| DNA polymerase III, tau subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|200389464|ref|ZP_03216075.1| DNA polymerase III, tau subunit [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|224582321|ref|YP_002636119.1| DNA polymerase III subunits gamma and tau [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|194457579|gb|EDX46418.1| DNA polymerase III, tau subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|197240337|gb|EDY22957.1| DNA polymerase III, tau subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|199601909|gb|EDZ00455.1| DNA polymerase III, tau subunit [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205324245|gb|EDZ12084.1| DNA polymerase III, tau subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205334143|gb|EDZ20907.1| DNA polymerase III, tau subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205349826|gb|EDZ36457.1| DNA polymerase III, tau subunit [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|224466848|gb|ACN44678.1| DNA polymerase III subunits gamma and tau [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|320084759|emb|CBY94549.1| DNA polymerase III, tau and gamma subunits [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 642

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 52/306 (16%), Positives = 108/306 (35%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++   +    + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +A    A   ++  + G+ R A  L     D A  +    ++ +   A
Sbjct: 184 RHQLEHILNEEHIAHEPRALQLLSRAADGSLRDALSL----TDQAIASGDGQVSTQAVSA 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L  D+       L  +  +    G   + +   +A      +A+   +   + +  
Sbjct: 240 MLGTLDDDQA------LSLVEAVVDANGERVMSLINEAAARGIEWEALLVEMLSLLHRIA 293

Query: 309 FIQRTP 314
            +Q +P
Sbjct: 294 MVQLSP 299


>gi|119598577|gb|EAW78171.1| replication factor C (activator 1) 4, 37kDa, isoform CRA_b [Homo
           sapiens]
 gi|194386378|dbj|BAG59753.1| unnamed protein product [Homo sapiens]
          Length = 303

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 56/267 (20%), Positives = 85/267 (31%), Gaps = 47/267 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+ ++E   Q E  + LK  +E A      L ++LF GPPG GKT+     AR
Sbjct: 39  PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGAD-----LPNLLFYGPPGTGKTSTILAAAR 93

Query: 77  -------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD--------VLFIDEIH 115
                        EL  +       V  K  + A L  +    D        ++ +DE  
Sbjct: 94  ELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEAD 153

Query: 116 RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
            ++   +  L   ME                     +RF        V  +  PL  R  
Sbjct: 154 SMTSAAQAALRRTMEKESKT----------------TRF--CLICNYVSRIIEPLTSRCS 195

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
              R      +  +  +   AK   + ++DE    +   S G  R A   L+        
Sbjct: 196 -KFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGG 254

Query: 236 AH--AKTITREIADAALLRLAIDKMGF 260
                K IT       L  L    +GF
Sbjct: 255 KEITEKVITDIAGVRVLDILNFFLVGF 281


>gi|255038674|ref|YP_003089295.1| DNA polymerase III, subunits gamma and tau [Dyadobacter fermentans
           DSM 18053]
 gi|254951430|gb|ACT96130.1| DNA polymerase III, subunits gamma and tau [Dyadobacter fermentans
           DSM 18053]
          Length = 621

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 76/233 (32%), Gaps = 20/233 (8%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T +   GQ    + LK  I             LF GP G+GKTT A+++A+ +
Sbjct: 8   ARKYRPVTFDSVVGQSHITTTLKNAIRTNHLAQA----FLFCGPRGVGKTTCARILAKTI 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL-----YPAMEDFQ 133
                        +     +   N     +  +D     S+     L     YP      
Sbjct: 64  NCQNLGDDVEACGECESCVSFQNNASFN-IHELDAASNNSVEDIRNLIDQVRYPPQTGKY 122

Query: 134 LDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
              ++ E             ++++   S    I ATT    +   +  R  I    N  +
Sbjct: 123 KIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQI-FDFNRIQ 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            +D+   +   AK  G+    EA   I  ++ G  R A  +      F+   H
Sbjct: 182 SKDIAHHLLDIAKKEGINAEHEALELIGQKADGGLRDALSMFDLNVTFSTNNH 234


>gi|204930489|ref|ZP_03221419.1| DNA polymerase III, tau subunit [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|204320423|gb|EDZ05626.1| DNA polymerase III, tau subunit [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
          Length = 642

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 52/306 (16%), Positives = 108/306 (35%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++   +    + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +A    A   ++  + G+ R A  L     D A  +    ++ +   A
Sbjct: 184 RHQLEHILNEEHIAHEPRALQLLSRAADGSLRDALSL----TDQAIASGDGQVSTQAVSA 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L  D+       L  +  +    G   + +   +A      +A+   +   + +  
Sbjct: 240 MLGTLDDDQA------LSLVEAVVDANGERVMSLINEAAARGIEWEALLVEMLSLLHRIA 293

Query: 309 FIQRTP 314
            +Q +P
Sbjct: 294 MVQLSP 299


>gi|197247588|ref|YP_002145467.1| DNA polymerase III subunits gamma and tau [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197211291|gb|ACH48688.1| DNA polymerase III, tau subunit [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
          Length = 642

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 52/306 (16%), Positives = 108/306 (35%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++   +    + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +A    A   ++  + G+ R A  L     D A  +    ++ +   A
Sbjct: 184 RHQLEHILNEEHIAHEPRALQLLSRAADGSLRDALSL----TDQAIASGDGQVSTQAVSA 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L  D+       L  +  +    G   + +   +A      +A+   +   + +  
Sbjct: 240 MLGTLDDDQA------LSLVEAVVDANGERVMSLINEAAARGIEWEALLVEMLSLLHRIA 293

Query: 309 FIQRTP 314
            +Q +P
Sbjct: 294 MVQLSP 299


>gi|198243935|ref|YP_002214437.1| DNA polymerase III subunits gamma and tau [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|207855963|ref|YP_002242614.1| DNA polymerase III subunits gamma and tau [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|197938451|gb|ACH75784.1| DNA polymerase III, tau subunit [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|206707766|emb|CAR32051.1| DNA polymerase III subunits gamma and tau [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|326622184|gb|EGE28529.1| DNA polymerase III, tau subunit [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 642

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 52/306 (16%), Positives = 108/306 (35%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++   +    + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +A    A   ++  + G+ R A  L     D A  +    ++ +   A
Sbjct: 184 RHQLEHILNEEHIAHEPRALQLLSRAADGSLRDALSL----TDQAIASGDGQVSTQAVSA 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L  D+       L  +  +    G   + +   +A      +A+   +   + +  
Sbjct: 240 MLGTLDDDQA------LSLVEAVVDANGERVMSLINEAAARGIEWEALLVEMLSLLHRIA 293

Query: 309 FIQRTP 314
            +Q +P
Sbjct: 294 MVQLSP 299


>gi|323697998|ref|ZP_08109910.1| DNA polymerase III, subunits gamma and tau [Desulfovibrio sp.
           ND132]
 gi|323457930|gb|EGB13795.1| DNA polymerase III, subunits gamma and tau [Desulfovibrio
           desulfuricans ND132]
          Length = 622

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 84/229 (36%), Gaps = 21/229 (9%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +  RP+T EE  GQ    S L      A A+ +     LF G  G+GKTT+A++ A+ L 
Sbjct: 8   AKYRPQTFEEVAGQQAVKSILSR----AAAQDKIAPAYLFSGTRGVGKTTIARIFAKALN 63

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHR-----LSIIVEEILYPAMEDFQL 134
               + +G           +   +   DV+ ID            + E+I Y  ++    
Sbjct: 64  C-VNAPTGEPCNVCDHCRQITAGVAP-DVIEIDGASNRGIDDARRLKEDIGYAPIDGRYK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             ++ E             ++++    R T I ATT        +  R          + 
Sbjct: 122 VFIIDEAHMLTKEAFNALLKTLEEPPPRATFIMATTEHHKFPATIISRCQHYTFKMLPQA 181

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
           E L   +++   L GL     A   IA R  G+ R +  LL +     E
Sbjct: 182 E-LVAHLEKIMNLEGLKYEPSALSIIAKRGAGSVRDSMSLLGQALAMGE 229


>gi|15594806|ref|NP_212595.1| DNA polymerase III subunits gamma and tau [Borrelia burgdorferi
           B31]
 gi|2688379|gb|AAC66831.1| DNA polymerase III, subunits gamma and tau (dnaX) [Borrelia
           burgdorferi B31]
          Length = 560

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 58/263 (22%), Positives = 100/263 (38%), Gaps = 29/263 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPR      GQ      LK  IE  K         +F GP G+GKT+ A+  AR L    
Sbjct: 12  RPRDFNSLEGQDFVVETLKHSIEKNKIANAY----IFSGPRGVGKTSSARAFARCLNCR- 66

Query: 83  RSTSGPVIAKAGDLA--ALLTNLEDRDVLFIDEIHRLSII-----VEEILYPAMEDFQLD 135
              +GP +   G+ +    + N    DV+ ID     S+       EEI++P        
Sbjct: 67  ---NGPTVMPCGECSNCKSIENDSSLDVVEIDGASNTSVQDIRQIKEEIMFPPAISKYRI 123

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             ++++   +    I ATT    L   ++ R           ++
Sbjct: 124 YIIDEVHMLSNSAFNALLKTIEEPPNYIVFIFATTESHKLPETIKSRCQ-HFSFKLLSLD 182

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA----HAKTIT 242
            +  ++++      +   DEA   IA +S G+ R A  L  ++  F +        ++  
Sbjct: 183 KIYNMLKKVCLEDDIKYEDEALKWIAYKSSGSVRDAYTLFDQIVSFTDSNIKLDQIRSKM 242

Query: 243 REIADAALLRLAIDKMGFDQLDL 265
               D  L +L++  +G D  +L
Sbjct: 243 GLTNDEFLEKLSVSILGEDVKEL 265


>gi|15828258|ref|NP_302521.1| DNA polymerase III subunits gamma and tau [Mycobacterium leprae TN]
 gi|221230735|ref|YP_002504151.1| DNA polymerase III subunits gamma and tau [Mycobacterium leprae
           Br4923]
 gi|3150103|emb|CAA19155.1| DNA polymerase III subunits gamma and tau [Mycobacterium leprae]
 gi|13093951|emb|CAC31851.1| DNA polymerase III, subunit [gamma/tau] [Mycobacterium leprae]
 gi|219933842|emb|CAR72433.1| DNA polymerase III, subunit [gamma/tau] [Mycobacterium leprae
           Br4923]
          Length = 611

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 53/254 (20%), Positives = 84/254 (33%), Gaps = 23/254 (9%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
              RP    E  GQ      L + +EA +         LF GP G GKT+ A+++AR L 
Sbjct: 5   RKYRPAAFAEVVGQEHVTEPLSIALEAGRINHAY----LFSGPRGCGKTSSARILARSLN 60

Query: 80  VNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMED 131
               +T+ P  V      LA         DV+ +D      +     L       PA   
Sbjct: 61  CAQGTTATPCGVCESCLSLAP--NAPGHIDVVELDAASHGGVDDTRELRDRAFYAPAQSR 118

Query: 132 FQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +++ ++         G     + V+        I ATT    +   ++ R          
Sbjct: 119 YRVFIVDEAHMVTTAGFNALLKIVEEPPDHLIFIFATTEPEKVLPTIRSR-THHYPFRLL 177

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
               ++ +V R     G+ V D     +     G+PR    +L ++   AE  H      
Sbjct: 178 SPRTMRALVGRICAQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLVAGAEGEHVTYQRA 237

Query: 244 EIADAALLRLAIDK 257
                A     ID 
Sbjct: 238 LKLLGATDVGLIDD 251


>gi|205351792|ref|YP_002225593.1| DNA polymerase III subunits gamma and tau [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|205271573|emb|CAR36393.1| DNA polymerase III subunits gamma and tau [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|326626828|gb|EGE33171.1| DNA polymerase III subunits gamma and tau [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
          Length = 642

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 52/306 (16%), Positives = 108/306 (35%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++   +    + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +A    A   ++  + G+ R A  L     D A  +    ++ +   A
Sbjct: 184 RHQLEHILNEEHIAHEPRALQLLSRAADGSLRDALSL----TDQAIASGDGQVSTQAVSA 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L  D+       L  +  +    G   + +   +A      +A+   +   + +  
Sbjct: 240 MLGTLDDDQA------LSLVEAVVDANGERVMSLINEAAARGIEWEALLVEMLSLLHRIA 293

Query: 309 FIQRTP 314
            +Q +P
Sbjct: 294 MVQLSP 299


>gi|220932328|ref|YP_002509236.1| Sporulation protease LonB [Halothermothrix orenii H 168]
 gi|219993638|gb|ACL70241.1| Sporulation protease LonB [Halothermothrix orenii H 168]
          Length = 558

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 58/285 (20%), Positives = 90/285 (31%), Gaps = 56/285 (19%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +      RP   E+  GQ E    LK     A        HV+  GPPG+GKT  A++V 
Sbjct: 59  EPLAEKTRPTGFEDIIGQKEGIEALK-----AALCGPNPQHVILYGPPGVGKTAAARLVL 113

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDV--------------------------- 108
                N  S      AK  ++       ++R +                           
Sbjct: 114 ETAKRNPLSPFKR-DAKFIEIDGTTARFDERSIADPLIGSVHDPIYQGAGPMGMAGIPQP 172

Query: 109 ------------LFIDEIHRLSIIVEEILYPAMEDFQLDL----MVGEGPSARSVKINL- 151
                       LFIDEI  L  I    L   +ED ++ L       E  +      ++ 
Sbjct: 173 KPGAVTKAHGGVLFIDEIGELHPIQMNKLLKVLEDRKVFLDSAYYSEEDTNIPQYIHDIF 232

Query: 152 -----SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDE 206
                + F LI ATTR      P      + I       ++++ I  R  K     + D+
Sbjct: 233 QNGLPADFRLIGATTRQPDEIPPAIRSRCLEIFFRELSTDEIRKIAVRAVKKIRFKIEDK 292

Query: 207 AACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           A   I   ++   R    +++     A   H + I     +  L 
Sbjct: 293 ALDLIEKYAKN-GRETVNMVQLAGGIAIAGHRQEIKAHDIEKVLN 336


>gi|322383230|ref|ZP_08057041.1| LonB ATP-dependent protease-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321152499|gb|EFX45285.1| LonB ATP-dependent protease-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 565

 Score = 72.8 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 63/284 (22%), Positives = 92/284 (32%), Gaps = 62/284 (21%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                 RP +LE+  GQ E    LK     A        HVL  GPPG+GKT  A+VV  
Sbjct: 51  PLAEKTRPSSLEDIVGQKEGLKALK-----AALCGPNPQHVLIYGPPGVGKTAAARVVLE 105

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR------------------------------ 106
           E   N +S      AK  ++ A     ++R                              
Sbjct: 106 EAKKNIKSPFRQE-AKFTEIDATTARFDERGIADPLIGSVHDPIYQGAGAMGVAGIPQPK 164

Query: 107 ---------DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS----- 152
                     +LFIDEI  L  I    L   +ED ++ L   E     S  +N+      
Sbjct: 165 PGAVTKAHGGILFIDEIGELHPIQMNKLLKVLEDRKVFL---ESAYYSSEDVNIPSYIHD 221

Query: 153 --------RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVT 204
                    F L+ ATTR      P      + I       E++  I +      G    
Sbjct: 222 IFQNGLPADFRLVGATTRTPDEIPPAIRSRCMEIFFRPLLPEEIGRIAENALDKIGFPQN 281

Query: 205 DEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             AA E+  +     R A  +++     A   + + +T    + 
Sbjct: 282 P-AAVEVVKKYATNGREAVNIIQLAAGIAMTENMEQVTAAQIEW 324


>gi|1527143|gb|AAC97559.1| DNA polymerase III tau subunit [Salmonella enterica subsp. enterica
           serovar Typhimurium]
          Length = 642

 Score = 72.8 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 52/306 (16%), Positives = 108/306 (35%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++   +    + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +A    A   ++  + G+ R A  L     D A  +    ++ +   A
Sbjct: 184 RHQLEHILNEEHIAHEPRALQLLSRAADGSLRDALSL----TDQASSSGDGQVSTQAVSA 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L  D+       L  +  +    G   + +   +A      +A+   +   + +  
Sbjct: 240 MLGTLDDDQA------LSLVEAVVDANGERVMSLINEAAARGIEWEALLVEMLSLLHRIA 293

Query: 309 FIQRTP 314
            +Q +P
Sbjct: 294 MVQLSP 299


>gi|146296344|ref|YP_001180115.1| DNA polymerase III, subunits gamma and tau [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409920|gb|ABP66924.1| DNA polymerase III, subunits gamma and tau [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 535

 Score = 72.8 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 91/234 (38%), Gaps = 21/234 (8%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP+  E+   Q      LK  I+  K         +F GP G GKTT A+++AR
Sbjct: 4   ALYRKYRPKVFEDVVAQEHITKTLKNQIKQDKVAHAY----IFTGPRGTGKTTTAKIMAR 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII-----VEEILYPAMED 131
            +         P      ++   + N +  DVL ID     S+       +E+ YP    
Sbjct: 60  AVNCLNPKDGNPCNEC--EVCQSILNEKTLDVLEIDAASNTSVNDVRQIRDEVRYPPSMC 117

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
            +   ++ E             ++++   +    I ATT +  +   +  R         
Sbjct: 118 KRRVYIIDEVHMLSTGAFNALLKTLEEPPAHALFILATTDIQKVPATILSRCQ-RFDFKR 176

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
             ++D+   +++  +L  +++ D+A   I+ ++ G  R A  +L R  + ++  
Sbjct: 177 ISVKDIYERLKKVVELEKISIDDQALYLISQKAEGALRDALTILERCVNTSDEH 230


>gi|308070422|ref|YP_003872027.1| ATP-dependent protease La-like protein [Paenibacillus polymyxa
           E681]
 gi|305859701|gb|ADM71489.1| ATP-dependent protease La-like protein [Paenibacillus polymyxa
           E681]
          Length = 575

 Score = 72.8 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 58/266 (21%), Positives = 87/266 (32%), Gaps = 56/266 (21%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                 RP TL++  GQ +    LK  + +A  +     HV+  GPPG+GKT  A+VV  
Sbjct: 58  PLAERTRPATLQDIVGQKDGLRALKAALCSANPQ-----HVIIYGPPGVGKTAAARVVLE 112

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDV---------------------------- 108
           E   N  S      AK  ++ A     ++R +                            
Sbjct: 113 EAKKNLSSPFKG-DAKFTEIDATTARFDERGIADPLIGSVHDPIYQGAGAMGVAGIPQPK 171

Query: 109 -----------LFIDEIHRLSIIVEEILYPAMEDFQLDL------MVGEGPSARSVKI-- 149
                      LFIDEI  L       L   +ED ++ L             A    I  
Sbjct: 172 PGAVTKAHGGMLFIDEIGELHPTQMNKLLKVLEDRKVFLESAYYNSEDSNTPAYIHDIFQ 231

Query: 150 --NLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEA 207
               + F L+ ATTR      P      + I     + +++  I +      G     E 
Sbjct: 232 NGLPADFRLVGATTRSPHELPPAIRSRCMEIYFRALQPQEIARIAEDAVHKLGFGPCPE- 290

Query: 208 ACEIAMRSRGTPRIAGRLLRRVRDFA 233
           A E+  R     R A  +++     A
Sbjct: 291 AVEVVQRYATNGREAVNMIQLAAGLA 316


>gi|284928754|ref|YP_003421276.1| DNA polymerase III subunit gamma/tau [cyanobacterium UCYN-A]
 gi|284809213|gb|ADB94918.1| DNA polymerase III, subunit gamma/tau [cyanobacterium UCYN-A]
          Length = 726

 Score = 72.8 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 53/244 (21%), Positives = 94/244 (38%), Gaps = 25/244 (10%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVV 74
           +      RP+T +   GQ      L   I     R++ + H  LF GP G GKT+ A++ 
Sbjct: 5   EPLYQKYRPQTFDGLVGQKSIVLTLSNAI-----RSQRISHAYLFTGPRGTGKTSTARIF 59

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDR--DVLFID-----EIHRLSIIVEEILYP 127
           A+   +N  ++  P I+  G+  A  T  +    DV+ ID      +  +  I+E+  + 
Sbjct: 60  AKS--INCLASDAPSISPCGNCEACQTINKGSSLDVIEIDAASNTGVDNIREIIEQAKFA 117

Query: 128 AMEDFQLDLMVGEGPSARSVKIN---------LSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            M+      +V E     +   N               I ATT    +   +  R     
Sbjct: 118 PMQLRYKIYIVDECHMLSTAAFNALLKILEEPPKHVIFILATTDPQRVLPTIISRCQ-RF 176

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
                 IE++   + + AK   + +  +A   +A  S G  R A  LL ++  F    ++
Sbjct: 177 DYRRIAIEEIVQHLGKIAKEENINIEIDALNLVAKISNGGLRDAESLLDQLSLFTGKINS 236

Query: 239 KTIT 242
           + + 
Sbjct: 237 EKVN 240


>gi|110798596|ref|YP_696086.1| ATP-dependent protease LonB [Clostridium perfringens ATCC 13124]
 gi|168207808|ref|ZP_02633813.1| ATP-dependent protease LonB [Clostridium perfringens E str.
           JGS1987]
 gi|168212104|ref|ZP_02637729.1| ATP-dependent protease LonB [Clostridium perfringens B str. ATCC
           3626]
 gi|110673243|gb|ABG82230.1| ATP-dependent protease LonB [Clostridium perfringens ATCC 13124]
 gi|170660860|gb|EDT13543.1| ATP-dependent protease LonB [Clostridium perfringens E str.
           JGS1987]
 gi|170709988|gb|EDT22170.1| ATP-dependent protease LonB [Clostridium perfringens B str. ATCC
           3626]
          Length = 570

 Score = 72.8 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 66/330 (20%), Positives = 108/330 (32%), Gaps = 64/330 (19%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP  LEE  GQ +    LK     A        HV+  GPPG+GKT  A+++  E     
Sbjct: 64  RPSNLEEIIGQEKGIKALK-----AALCGPNPQHVIIYGPPGVGKTAAARIILEEAKKMA 118

Query: 83  RSTSG------------------------------PVIAKAGDLA---------ALLTNL 103
            S                                 P+   AG L            +T  
Sbjct: 119 ASPFNKDSKFVEIDATTLRFDERGIADPLIGSVHDPIYQGAGSLGIAGVPQPKPGAVTKA 178

Query: 104 EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL----MVGEGPSARSV------KINLSR 153
               +LFIDEI  L  I    L   +ED ++ L       E P+              + 
Sbjct: 179 HGG-ILFIDEIGELHPIELNKLLKVLEDRKVFLDSAYYSSEDPNTPRYIKEIFDNGLPAD 237

Query: 154 FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAM 213
           F LI ATTR      P      + I      +E+++ I        G  ++DE    ++ 
Sbjct: 238 FRLIGATTRSPEEIVPAIRSRCVEIFFRGLTVEEIRKIALNATNKVGYRISDEGLDIVSR 297

Query: 214 RSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA-----IDKMGFDQLDLRYL 268
                  +    L ++     +   +   +E     ++        +++M  D+ ++ Y+
Sbjct: 298 YCTNGREVIN--LVQLCSGLAINENRDYIKESDIYWVIENGQYNPRMERMINDKPEIGYV 355

Query: 269 TMIARNF--GGGPVGIETISAGLSEPRDAI 296
             +A      G  + IE  +   S    +I
Sbjct: 356 NGLAVYGANNGALMEIEATAKLSSNSIGSI 385


>gi|322614760|gb|EFY11689.1| DNA polymerase III subunits gamma and tau [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322618867|gb|EFY15755.1| DNA polymerase III subunits gamma and tau [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322623574|gb|EFY20413.1| DNA polymerase III subunits gamma and tau [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322629127|gb|EFY25906.1| DNA polymerase III subunits gamma and tau [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322631848|gb|EFY28602.1| DNA polymerase III subunits gamma and tau [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322637415|gb|EFY34117.1| DNA polymerase III subunits gamma and tau [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322642100|gb|EFY38710.1| DNA polymerase III subunits gamma and tau [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322645876|gb|EFY42397.1| DNA polymerase III subunits gamma and tau [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322652338|gb|EFY48693.1| DNA polymerase III subunits gamma and tau [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322653241|gb|EFY49574.1| DNA polymerase III subunits gamma and tau [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322660610|gb|EFY56846.1| DNA polymerase III subunits gamma and tau [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322664762|gb|EFY60955.1| DNA polymerase III subunits gamma and tau [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322669185|gb|EFY65335.1| DNA polymerase III subunits gamma and tau [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322670730|gb|EFY66863.1| DNA polymerase III subunits gamma and tau [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322679031|gb|EFY75086.1| DNA polymerase III subunits gamma and tau [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322682060|gb|EFY78085.1| DNA polymerase III subunits gamma and tau [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322685111|gb|EFY81108.1| DNA polymerase III subunits gamma and tau [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323192995|gb|EFZ78218.1| DNA polymerase III subunits gamma and tau [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323196923|gb|EFZ82065.1| DNA polymerase III subunits gamma and tau [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323203908|gb|EFZ88925.1| DNA polymerase III subunits gamma and tau [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323207007|gb|EFZ91960.1| DNA polymerase III subunits gamma and tau [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323214210|gb|EFZ98968.1| DNA polymerase III subunits gamma and tau [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323214466|gb|EFZ99217.1| DNA polymerase III subunits gamma and tau [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323219191|gb|EGA03688.1| DNA polymerase III subunits gamma and tau [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323226972|gb|EGA11153.1| DNA polymerase III subunits gamma and tau [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323230210|gb|EGA14330.1| DNA polymerase III subunits gamma and tau [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323233948|gb|EGA18037.1| DNA polymerase III subunits gamma and tau [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323238358|gb|EGA22416.1| DNA polymerase III subunits gamma and tau [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323244045|gb|EGA28054.1| DNA polymerase III subunits gamma and tau [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323251832|gb|EGA35695.1| DNA polymerase III subunits gamma and tau [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323257828|gb|EGA41507.1| DNA polymerase III subunits gamma and tau [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323261158|gb|EGA44750.1| DNA polymerase III subunits gamma and tau [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323264912|gb|EGA48411.1| DNA polymerase III subunits gamma and tau [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323272475|gb|EGA55882.1| DNA polymerase III subunits gamma and tau [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
          Length = 642

 Score = 72.8 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 52/306 (16%), Positives = 108/306 (35%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++   +    + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +A    A   ++  + G+ R A  L     D A  +    ++ +   A
Sbjct: 184 RHQLEHILNEEHIAHEPRALQLLSRAADGSLRDALSL----TDQAIASGDGQVSTQAVSA 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L  D+       L  +  +    G   + +   +A      +A+   +   + +  
Sbjct: 240 MLGTLDDDQA------LSLVEAVVDANGERVMSLINEAAARGIEWEALLVEMLSLLHRIA 293

Query: 309 FIQRTP 314
            +Q +P
Sbjct: 294 MVQLSP 299


>gi|168215327|ref|ZP_02640952.1| ATP-dependent protease LonB [Clostridium perfringens CPE str.
           F4969]
 gi|170713284|gb|EDT25466.1| ATP-dependent protease LonB [Clostridium perfringens CPE str.
           F4969]
          Length = 570

 Score = 72.8 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 64/330 (19%), Positives = 109/330 (33%), Gaps = 64/330 (19%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP  LEE  GQ +    LK     A        HV+  GPPG+GKT  A+++  E     
Sbjct: 64  RPSNLEEIIGQEKGIKALK-----AALCGPNPQHVIIYGPPGVGKTAAARIILEEAKKMA 118

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDV---------------------------------- 108
            S      +K  ++ A     ++R +                                  
Sbjct: 119 ASPFNK-DSKFVEIDATTLRFDERGIADPLIGSVHDPIYQGAGSLGIAGVPQPKPGAVTK 177

Query: 109 -----LFIDEIHRLSIIVEEILYPAMEDFQLDL----MVGEGPSARSV------KINLSR 153
                LFIDEI  L  I    L   +ED ++ L       E P+              + 
Sbjct: 178 AHGGMLFIDEIGELHPIELNKLLKVLEDRKVFLDSAYYSSEDPNTPRYIKEIFDNGLPAD 237

Query: 154 FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAM 213
           F LI ATTR      P      + I      +E+++ I        G  ++DE    ++ 
Sbjct: 238 FRLIGATTRSPEEIVPAIRSRCVEIFFRGLTVEEIRKIALNATNKVGYRISDEGLDIVSR 297

Query: 214 RSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA-----IDKMGFDQLDLRYL 268
                  +    L ++     +   +   +E     ++        +++M  D+ ++ Y+
Sbjct: 298 YCTNGREVIN--LVQLCSGLAINENRDYIKESDIYWVIENGQYNPRMERMINDKPEIGYV 355

Query: 269 TMIARNF--GGGPVGIETISAGLSEPRDAI 296
             +A      G  + IE  +   S    +I
Sbjct: 356 NGLAVYGANNGALMEIEATAKLSSNSIGSI 385


>gi|124806707|ref|XP_001350805.1| replication factor C subunit 4 [Plasmodium falciparum 3D7]
 gi|11559514|gb|AAG37992.1|AF126257_1 replication factor C subunit 4 [Plasmodium falciparum]
 gi|23496934|gb|AAN36485.1| replication factor C subunit 4 [Plasmodium falciparum 3D7]
          Length = 336

 Score = 72.8 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 48/254 (18%), Positives = 91/254 (35%), Gaps = 39/254 (15%)

Query: 2   MDREGLLSRNVSQE-DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M+ +   +R + +  D  I   RP  L+E  G     + LK  I +       + ++L  
Sbjct: 1   MEEDSFKNRLLKRNIDIWIEKYRPEFLDEVVGNPFVINTLKSIITSG-----NMPNLLLA 55

Query: 61  GPPGLGKTTLAQVVAREL------------GVNFRSTSGPVIAKAGDLAALLTNL--EDR 106
           G PG GKTT    +A E+              +       +  +    A  + +L     
Sbjct: 56  GAPGTGKTTSILCLASEMLGNQAKKAVLELNASDDRGINVIRDRIKSFAKEIISLPPGKH 115

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
            ++ +DE+  ++   ++ L   ME +                 + +RF    A  +   +
Sbjct: 116 KIIILDEVDSMTTAAQQSLRRIMELYS----------------DTTRF--ALACNQSEKI 157

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
            + LQ R  I       + + LK I++    L  +  TD+    +   + G  R A   L
Sbjct: 158 IDALQSRCAIIRYFKLSDDQVLKRILK-ICDLENIKYTDDGLDALTFIADGDLRKAVNCL 216

Query: 227 RRVRDFAEVAHAKT 240
           +      EV + + 
Sbjct: 217 QSTYAGLEVINKEN 230


>gi|62179095|ref|YP_215512.1| DNA polymerase III subunits gamma and tau [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|62126728|gb|AAX64431.1| DNA polymerase III, tau and gamma subunits; DNA elongation factor
           III [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|322713556|gb|EFZ05127.1| DNA polymerase III subunits gamma and tau [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
          Length = 642

 Score = 72.8 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 52/306 (16%), Positives = 108/306 (35%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++   +    + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +A    A   ++  + G+ R A  L     D A  +    ++ +   A
Sbjct: 184 RHQLEHILNEEHIAHEPRALQLLSRAADGSLRDALSL----TDQAIASGDGQVSTQAVSA 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L  D+       L  +  +    G   + +   +A      +A+   +   + +  
Sbjct: 240 MLGTLDDDQA------LSLVEAVVDANGERVMSLINEAAARGIEWEALLVEMLSLLHRIA 293

Query: 309 FIQRTP 314
            +Q +P
Sbjct: 294 MVQLSP 299


>gi|109098912|ref|XP_001084022.1| PREDICTED: replication factor C subunit 5 isoform 3 [Macaca
           mulatta]
          Length = 340

 Score = 72.4 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 79/238 (33%), Gaps = 38/238 (15%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           ++ L +    +    +   RP+TL +     +  S ++ FI       + L H+L  GPP
Sbjct: 8   QQELPAAAKIRNLPWVEKYRPQTLNDLISHQDILSTIQKFIS-----EDRLPHLLLYGPP 62

Query: 64  GLGKTTLAQVVA------RELGVNFRSTSGPVIAKAGDLAA-LLTNLEDRDVL------- 109
           G GKT+     A      +E G      +         +   +L+    R +        
Sbjct: 63  GTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLV 122

Query: 110 FIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
            +DE   ++   +  L   +E F       E      +   LS+                
Sbjct: 123 ILDEADAMTQDAQNALRRVIEKF------TENTRFCLICNYLSKIIP------------A 164

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
           LQ R     R      E +   ++   +   + ++++    +   S G  R A  +L+
Sbjct: 165 LQSRC-TRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNILQ 221


>gi|167396191|ref|XP_001741947.1| replication factor C subunit [Entamoeba dispar SAW760]
 gi|165893256|gb|EDR21578.1| replication factor C subunit, putative [Entamoeba dispar SAW760]
          Length = 315

 Score = 72.4 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 57/316 (18%), Positives = 111/316 (35%), Gaps = 54/316 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+ L+E  G V+    LK F ++     +   H+L  G PG+GKTT    +A 
Sbjct: 8   PWVEKYRPKLLDEIIGNVDIIKTLKSFRDS-----KQFPHLLLCGQPGIGKTTSIHCLAH 62

Query: 77  E-----LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
           E             +         + + + +  ++ ++  D + ++ I+ E         
Sbjct: 63  ELLKDRYKEAVLELNASDERGIETIRSTIKSFCEKKLVLPDNLPKIVILDEA-------- 114

Query: 132 FQLDLMVGEGPSA--RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
              D M      A  R+++I+      + A      +  P+Q R    +       E+L 
Sbjct: 115 ---DSMTTAAFQALRRTMEIHSKTTRFVLACNTPEKIIEPIQSRCA-RLTFRPLGEEELM 170

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA---------------- 233
             ++  A+   + + D+A   + + S G  R A   L+                      
Sbjct: 171 NRIKEIARCENVDIEDDAVKALEIVSEGDMRKAINALQTCAIIQGRITKEQVYQRNDLPS 230

Query: 234 ---EVAHAKTITREIADAAL-LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGL 289
               +   +   ++  D AL     + ++GFD  D   + MI R F              
Sbjct: 231 ADNIIQAIQLCLKKDFDGALIEIKKVQQLGFDGND--IMDMIVRMFSKID--------AS 280

Query: 290 SEPRDAIEDLIEPYMI 305
            E R  + ++  P++I
Sbjct: 281 EEIRVRLYEIAAPFLI 296


>gi|16763864|ref|NP_459479.1| DNA polymerase III subunits gamma and tau [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|167990471|ref|ZP_02571571.1| DNA polymerase III, tau subunit [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168465581|ref|ZP_02699463.1| DNA polymerase III, tau subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|20141409|sp|P74876|DPO3X_SALTY RecName: Full=DNA polymerase III subunit tau; Contains: RecName:
           Full=DNA polymerase III subunit gamma
 gi|16418992|gb|AAL19438.1| DNA polymerase III, tau and gamma subunits [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|195631598|gb|EDX50118.1| DNA polymerase III, tau subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|205330903|gb|EDZ17667.1| DNA polymerase III, tau subunit [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|261245766|emb|CBG23563.1| DNA polymerase III subunits gamma and tau [Salmonella enterica
           subsp. enterica serovar Typhimurium str. D23580]
 gi|267992201|gb|ACY87086.1| DNA polymerase III subunits gamma and tau [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301157093|emb|CBW16577.1| DNA polymerase III subunits gamma and tau [Salmonella enterica
           subsp. enterica serovar Typhimurium str. SL1344]
 gi|312911516|dbj|BAJ35490.1| DNA polymerase III subunits gamma and tau [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|321226062|gb|EFX51113.1| DNA polymerase III subunits gamma and tau [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|323128803|gb|ADX16233.1| DNA polymerase III, tau subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332987433|gb|AEF06416.1| DNA polymerase III subunits gamma and tau [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 642

 Score = 72.4 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 52/306 (16%), Positives = 108/306 (35%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++   +    + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +A    A   ++  + G+ R A  L     D A  +    ++ +   A
Sbjct: 184 RHQLEHILNEEHIAHEPRALQLLSRAADGSLRDALSL----TDQAIASGDGQVSTQAVSA 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L  D+       L  +  +    G   + +   +A      +A+   +   + +  
Sbjct: 240 MLGTLDDDQA------LSLVEAVVDANGERVMSLINEAAARGIEWEALLVEMLSLLHRIA 293

Query: 309 FIQRTP 314
            +Q +P
Sbjct: 294 MVQLSP 299


>gi|194437483|ref|ZP_03069580.1| DNA polymerase III, tau subunit [Escherichia coli 101-1]
 gi|194423652|gb|EDX39642.1| DNA polymerase III, tau subunit [Escherichia coli 101-1]
 gi|323972324|gb|EGB67534.1| DNA polymerase III [Escherichia coli TA007]
          Length = 643

 Score = 72.4 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 53/306 (17%), Positives = 107/306 (34%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++        + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +A    A   +A  + G+ R A  L     D A  +    ++ +   A
Sbjct: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAIASGDGQVSTQAVSA 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L  D+       L  +  +    G   + +   +A      +A+   +   + +  
Sbjct: 240 MLGTLDDDQA------LSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLSLLHRIA 293

Query: 309 FIQRTP 314
            +Q +P
Sbjct: 294 MVQLSP 299


>gi|182627121|ref|ZP_02954839.1| rubrerythrin [Clostridium perfringens D str. JGS1721]
 gi|177907510|gb|EDT70168.1| rubrerythrin [Clostridium perfringens D str. JGS1721]
          Length = 549

 Score = 72.4 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 66/330 (20%), Positives = 108/330 (32%), Gaps = 64/330 (19%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP  LEE  GQ +    LK     A        HV+  GPPG+GKT  A+++  E     
Sbjct: 43  RPSNLEEIIGQEKGIKALK-----AALCGPNPQHVIIYGPPGVGKTAAARIILEEAKKMA 97

Query: 83  RSTSG------------------------------PVIAKAGDLA---------ALLTNL 103
            S                                 P+   AG L            +T  
Sbjct: 98  ASPFNKDSKFVEIDATTLRFDERGIADPLIGSVHDPIYQGAGSLGIAGVPQPKPGAVTKA 157

Query: 104 EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL----MVGEGPSARSV------KINLSR 153
               +LFIDEI  L  I    L   +ED ++ L       E P+              + 
Sbjct: 158 HGG-ILFIDEIGELHPIELNKLLKVLEDRKVFLDSAYYSSEDPNTPRYIKEIFDNGLPAD 216

Query: 154 FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAM 213
           F LI ATTR      P      + I      +E+++ I        G  ++DE    ++ 
Sbjct: 217 FRLIGATTRSPEEIVPAIRSRCVEIFFRGLTVEEIRKIALNATNKVGYRISDEGLDIVSR 276

Query: 214 RSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA-----IDKMGFDQLDLRYL 268
                  +    L ++     +   +   +E     ++        +++M  D+ ++ Y+
Sbjct: 277 YCTNGREVIN--LVQLCSGLAINENRDYIKESDIYWVIENGQYNPRMERMINDKPEIGYV 334

Query: 269 TMIARNF--GGGPVGIETISAGLSEPRDAI 296
             +A      G  + IE  +   S    +I
Sbjct: 335 NGLAVYGANNGALMEIEATAKLSSNNIGSI 364


>gi|282599314|ref|YP_003358626.1| Gp44 clamp loader subunit DNA polymerase accessory protein
           [Shigella phage phiSboM-AG3]
 gi|226973620|gb|ACO94373.1| Gp44 clamp loader subunit DNA polymerase accessory protein
           [Shigella phage phiSboM-AG3]
          Length = 329

 Score = 72.4 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 44/199 (22%), Positives = 72/199 (36%), Gaps = 19/199 (9%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP-PGLGKTTL 70
           VS + A  +  RP  L+E     +  + +  +I +       +  +LF  P PG GKTT 
Sbjct: 7   VSDQYAWENKYRPDNLDEIIIPQDVRAKIHGYITSG---NGNIPSMLFYSPQPGTGKTTS 63

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALL--------TNLEDRDVLFIDEIHRLSIIVE 122
           A  V  E+G          +  + D+            +    R V+ +DE+ RLS+  +
Sbjct: 64  ALAVCNEIGCKQPLMINASLDNSIDVIRDRVIQYSTGVSVFGGRKVVILDEVERLSMAAQ 123

Query: 123 EILYPAME--DFQLDLMVGEGPSARSVKINLSRFTLIAA---TTRVGLLTNPLQDRFGIP 177
           E L   +E        ++      R  +   SR   I      T    +      R    
Sbjct: 124 ESLKGIVEKVSKNCSFILTTNAKQRVNEPLRSRCREIDFIWNETEADEVKLQFMRRCAEI 183

Query: 178 IRLN--FYEIEDLKTIVQR 194
           +R     Y+   L  IV+R
Sbjct: 184 LRSEGVEYDPPVLAAIVKR 202


>gi|167465551|ref|ZP_02330640.1| AAA ATPase, central domain protein [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 559

 Score = 72.4 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 63/284 (22%), Positives = 92/284 (32%), Gaps = 62/284 (21%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                 RP +LE+  GQ E    LK     A        HVL  GPPG+GKT  A+VV  
Sbjct: 45  PLAEKTRPSSLEDIVGQKEGLKALK-----AALCGPNPQHVLIYGPPGVGKTAAARVVLE 99

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR------------------------------ 106
           E   N +S      AK  ++ A     ++R                              
Sbjct: 100 EAKKNIKSPFRQE-AKFTEIDATTARFDERGIADPLIGSVHDPIYQGAGAMGVAGIPQPK 158

Query: 107 ---------DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS----- 152
                     +LFIDEI  L  I    L   +ED ++ L   E     S  +N+      
Sbjct: 159 PGAVTKAHGGILFIDEIGELHPIQMNKLLKVLEDRKVFL---ESAYYSSEDVNIPSYIHD 215

Query: 153 --------RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVT 204
                    F L+ ATTR      P      + I       E++  I +      G    
Sbjct: 216 IFQNGLPADFRLVGATTRTPDEIPPAIRSRCMEIFFRPLLPEEIGRIAENALDKIGFPQN 275

Query: 205 DEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             AA E+  +     R A  +++     A   + + +T    + 
Sbjct: 276 P-AAVEVVKKYATNGREAVNIIQLAAGIAMTENMEQVTAAQIEW 318


>gi|213418776|ref|ZP_03351842.1| Holliday junction DNA helicase B [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
 gi|213855440|ref|ZP_03383680.1| Holliday junction DNA helicase B [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
          Length = 43

 Score = 72.4 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 25/41 (60%), Positives = 31/41 (75%)

Query: 293 RDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           R+ IED++EPY+IQQGF+QRTPRGR+    AW H GI  P 
Sbjct: 1   RETIEDVLEPYLIQQGFLQRTPRGRMATVRAWNHFGITPPE 41


>gi|157363863|ref|YP_001470630.1| DNA polymerase III, subunits gamma and tau [Thermotoga lettingae
           TMO]
 gi|157314467|gb|ABV33566.1| DNA polymerase III, subunits gamma and tau [Thermotoga lettingae
           TMO]
          Length = 465

 Score = 72.4 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 53/288 (18%), Positives = 108/288 (37%), Gaps = 62/288 (21%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +A     RP+  ++   Q++A    K+ ++ A  + +     +F GP G GKT++A+++A
Sbjct: 2   EALYRKYRPKNFDQIIDQLQA----KLVLQNALLKNKISHAYIFSGPRGTGKTSVARILA 57

Query: 76  RELGVNFR------------------------STSGPVIAKAGDLAALLTNLEDRD---- 107
           + L  + R                                   ++  +   +  +     
Sbjct: 58  KALNCSNRKGYEPCCECESCLSIDRGTHPDVIELDAASNRGIDEIRKIRDAVGFKPMLSS 117

Query: 108 --VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
             +  IDE H L+      L   +E+                     +   + ATT +  
Sbjct: 118 HKIYIIDEFHMLTREAFNALLKTLEE------------------PPEKVLFVLATTNLER 159

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           +   +  R  +    NF E   L+ I ++ A    + + ++AA  IA R+ G  R A   
Sbjct: 160 VPQTIISRCQVIEFRNFSEDAILENI-RKVAHFESIELHEDAARMIARRASGGMRDALSY 218

Query: 226 LRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIAR 273
           L ++ ++A+    + IT ++ + AL  +       D++  RY+  I  
Sbjct: 219 LEQIANYAD---GQVITPQVVEKALGLVP------DEIVQRYIKAIRN 257


>gi|28211965|ref|NP_782909.1| ATP-dependent protease La-like protein [Clostridium tetani E88]
 gi|28204408|gb|AAO36846.1| ATP-dependent protease La-like protein [Clostridium tetani E88]
          Length = 563

 Score = 72.4 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 61/284 (21%), Positives = 96/284 (33%), Gaps = 58/284 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV-------- 74
           RP +  E  GQ +    LK     A        HV+  GPPG+GKT  A++V        
Sbjct: 62  RPNSFAEIIGQDKGIMALK-----AALCGPNPQHVIIYGPPGIGKTAAARLVLEYAKKNT 116

Query: 75  --------------ARELGVNFRSTSGPVIAKAGD-----------------LAALLTNL 103
                         A  +  + R  + P+I    D                  A  +T  
Sbjct: 117 SSPFKEEAKFIEIDATTIRFDDRGIADPLIGSVHDPIYQGAGPLGVAGIPQPKAGAVTKA 176

Query: 104 EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL----MVGEGPSARSVKINL------SR 153
               VLFIDEI  L   +   L   +ED ++ L         P+  S   ++      + 
Sbjct: 177 HGG-VLFIDEIGELHPTIMNKLLKVLEDRKVFLDSAYYNSSDPNVPSYIRDIFDNGFPAD 235

Query: 154 FTLIAATTRVG-LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIA 212
           F L+ ATTR    +T  L+ R            E+++ I ++  +  G  +   A   I 
Sbjct: 236 FRLVGATTRNPEEITPALRSRCVEIFFRGLLS-EEIQEICKKSVEKIGFTLEKSACDMIG 294

Query: 213 MRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAID 256
           + +    R A  LL+     A     K I +   +  +      
Sbjct: 295 LYASN-GREAINLLQLASGIALNEDRKKIIKSDIEWVVENGNYH 337


>gi|332978061|gb|EGK14799.1| ATP-dependent protease LonB [Desmospora sp. 8437]
          Length = 561

 Score = 72.4 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 62/289 (21%), Positives = 96/289 (33%), Gaps = 57/289 (19%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD+   + R+VS  +      RP + +E  GQ E    LK     A        H+L  G
Sbjct: 44  MDKLRKM-RSVSLTEPLSEKTRPSSFDEIVGQKEGLRALK-----AALCGPNPQHILIYG 97

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDV------------- 108
           PPG+GKT  A+VV  E   N +S      +K  ++ A     ++R +             
Sbjct: 98  PPGVGKTAAARVVLEEAKKNPQSPFNST-SKFVEIDATTARFDERGIADPLIGSVHDPIY 156

Query: 109 --------------------------LFIDEIHRLSIIVEEILYPAMEDFQLDL------ 136
                                     LFIDEI  L  I    L   +ED ++        
Sbjct: 157 QGAGAMGMAGIPQPKPGAVSKAHGGVLFIDEIGELHPIQMNKLLKVLEDRKVFFESAYYS 216

Query: 137 ---MVGEGPSARSVKINLS-RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
              +          +  L   F L+ ATTR      P      + I       E++  I 
Sbjct: 217 SEDVNTPTHIHDIFQNGLPADFRLVGATTRTPDEIPPAIRSRCVEIFFRPLLAEEIARIA 276

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
            +  +  G    + AA ++  +     R A  +++     A     K I
Sbjct: 277 HQAMERIGFD-HEPAAVDVIKKYATNGREAVNMVQTAGGLALTEGEKEI 324


>gi|304314451|ref|YP_003849598.1| replication factor C, large subunit [Methanothermobacter
           marburgensis str. Marburg]
 gi|302587910|gb|ADL58285.1| replication factor C, large subunit [Methanothermobacter
           marburgensis str. Marburg]
          Length = 470

 Score = 72.4 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 91/230 (39%), Gaps = 24/230 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           +     RPRT EE  G  +A + +K +I   KA  E    +L VGPPG GKTT+A ++ R
Sbjct: 2   SWTEKYRPRTFEEVAGNQKAIAEIKKWISGWKA-GEPQPPLLLVGPPGTGKTTMAHIIGR 60

Query: 77  EL------GVNFRSTSGPVIAKAGDLAALLTNL-EDRDVLFIDEIHRLSIIVEEILYPAM 129
           E         + + +   ++  AG+ +A  +    D  ++ +DE+  +            
Sbjct: 61  EFSDTLELNASDKRSQDAIMRTAGEASATRSLFNHDLKLIILDEVDGIH---------GN 111

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           ED       G     R ++ +     L A       L + ++ +  +      +    + 
Sbjct: 112 EDRG-----GVQAINRILRESRHPIVLTANDPYSKRLQS-IKPKCKVINIRKVHTS-SIA 164

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
             ++R  +  G+   D+   E+A RS G  R A   L  V    E    +
Sbjct: 165 AALKRICRAEGIDCPDDVLKELAKRSHGDLRSAINDLEAVASGEERVGEE 214


>gi|218512936|ref|ZP_03509776.1| recombination factor protein RarA [Rhizobium etli 8C-3]
          Length = 93

 Score = 72.4 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 6/87 (6%)

Query: 4  REGLLSRNVSQE----DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
             L + +V +E          LRP+TL E TGQ        V     +  + +L  ++F
Sbjct: 2  SNDLFAPSVPEEVAARRPLADRLRPKTLAEVTGQEHLTGEDGVLKRMIE--SGSLGSMIF 59

Query: 60 VGPPGLGKTTLAQVVARELGVNFRSTS 86
           GPPG GKTT+A++++ E G    S S
Sbjct: 60 WGPPGTGKTTVARLLSGEAGAGPSSIS 86


>gi|170017866|ref|YP_001728785.1| DNA polymerase III, gamma/tau subunit [Leuconostoc citreum KM20]
 gi|169804723|gb|ACA83341.1| DNA polymerase III, gamma/tau subunit [Leuconostoc citreum KM20]
          Length = 604

 Score = 72.4 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 82/233 (35%), Gaps = 40/233 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RPRT E+  GQ      LK  IE  +         LF GP G GKT+ A++ AR
Sbjct: 5   ALYRVYRPRTFEDMIGQEVITQTLKNAIETHQTGHAY----LFSGPRGTGKTSAAKIFAR 60

Query: 77  ELG-----------VNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSI 119
           E+             +         ++  D+  +L+N++      +  V  IDE+H LS 
Sbjct: 61  EVNGIAPETDDSQISDIVEFDAASNSRVEDMRDILSNVDYAPIEAEFKVYIIDEVHMLSN 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
                L   +E+                    +    I ATT    +   +  R      
Sbjct: 121 SAFNALLKTLEE------------------PPANVKFILATTEPQKVPVTILSRTQ-RFE 161

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
               + + +   +    K   +    +A   IA  + G  R A  +L +V  F
Sbjct: 162 FKRIDGQAIAAHLADVLKQQHIDFDQDALRIIANVAEGGMRDALSILDQVIAF 214


>gi|307717486|gb|ADN88796.1| recombination factor protein [Listeria ivanovii subsp. ivanovii]
 gi|307717488|gb|ADN88797.1| recombination factor protein [Listeria ivanovii subsp. ivanovii]
 gi|307717572|gb|ADN88839.1| recombination factor protein [Listeria ivanovii subsp. ivanovii]
 gi|307717576|gb|ADN88841.1| recombination factor protein [Listeria ivanovii subsp. ivanovii]
 gi|307717582|gb|ADN88844.1| recombination factor protein [Listeria ivanovii subsp. ivanovii]
          Length = 191

 Score = 72.4 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 44/202 (21%), Positives = 81/202 (40%), Gaps = 17/202 (8%)

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           G+GKT++A  +A      FR+ +     K   ++ A    +    +L +DE+HRL    +
Sbjct: 1   GIGKTSIASAIAGSTKYAFRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQ 60

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           + L P +E   + +++G   S   + IN +    I + T++  L     +   I +    
Sbjct: 61  DFLLPLLESGAI-ILIGATTSNPYIAINPA----IRSRTQIFELKPLTVEDIMITLDRAL 115

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT-- 240
            + +       RG     + + + A    A  S G  R A   L      +E        
Sbjct: 116 ADKD-------RGLGNYQVEIDEFAKKHFATASNGDVRSALNALELAVISSEPDEDGIVR 168

Query: 241 ITREIADAALLRL--AIDKMGF 260
           +T ++A+  L +   A DK G 
Sbjct: 169 VTLDVAEECLQKKSLAHDKDGD 190


>gi|317968362|ref|ZP_07969752.1| DNA polymerase III subunits gamma and tau [Synechococcus sp.
           CB0205]
          Length = 614

 Score = 72.4 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 86/221 (38%), Gaps = 19/221 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  ++  GQ    + L   + + +         LF GP G GKT+ A+++AR L    
Sbjct: 13  RPQRFDQLVGQEAIAATLGNALRSGRIA----PAYLFSGPRGTGKTSSARILARSLNCLS 68

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P    + +L   + N    DV+ ID      +  +  ++E   +  ++      +
Sbjct: 69  SDHPTPEPCGSCELCTSIANGNALDVIEIDAASNTGVDNIRELIERSRFAPVQARWKVYV 128

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           V E             ++++    R   + ATT    +   +  R           ++ L
Sbjct: 129 VDECHMLSTAAFNALLKTLEEPPPRVVFVLATTEPQRVLPTILSRCQ-RFDYRRIPLDAL 187

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           +  +   AK   + +T EA   +A R++G  R A  LL ++
Sbjct: 188 EQHLGWIAKEENIQITPEALHVVAQRAQGGLRDAESLLDQL 228


>gi|284163322|ref|YP_003401601.1| Replication factor C [Haloterrigena turkmenica DSM 5511]
 gi|284012977|gb|ADB58928.1| Replication factor C [Haloterrigena turkmenica DSM 5511]
          Length = 330

 Score = 72.4 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 50/243 (20%), Positives = 85/243 (34%), Gaps = 36/243 (14%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
               + +  I   RP  L+E  G       LK ++E      + L +++F GP G GKTT
Sbjct: 11  PTPGRTEVWIEKYRPERLDEIKGHENIVPRLKQYVE-----RDELPNLMFAGPAGTGKTT 65

Query: 70  LAQVVAREL------------GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
            A  +ARE+              + +     V  +  D A          ++F+DE   L
Sbjct: 66  AAVGIAREIYGDDWRENFLELNASDQRGIDVVRDRIKDFARSSFGGYSHRIIFLDEADAL 125

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           +   +  L   ME F                   +    I +      + +P+Q R  + 
Sbjct: 126 TSDAQSALRRTMEQFS------------------NNTRFILSCNYSSQIIDPIQSRCAV- 166

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            R      + ++  V+  A   G+ VTD+    +   + G  R A   L+      E   
Sbjct: 167 FRFTELTEDAIEAQVREIAANEGIEVTDDGVDALVYAADGDMRKAINGLQAAAVMGETVD 226

Query: 238 AKT 240
            +T
Sbjct: 227 EET 229


>gi|255018249|ref|ZP_05290375.1| hypothetical protein LmonF_12021 [Listeria monocytogenes FSL
           F2-515]
          Length = 289

 Score = 72.4 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 79/224 (35%), Gaps = 21/224 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP++ ++  GQ      LK  I     + +     LF GP G GKT+ A++ A+ +    
Sbjct: 2   RPQSFQDVVGQEHVTKTLKNAI----VQNKTSHAYLFSGPRGTGKTSAAKIFAKAINCEH 57

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P      ++    T+    DVL ID      +  +  I E++ Y          +
Sbjct: 58  GHDGEPCNEC--EICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYAPTVAKYKVYI 115

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT    L   +  R            + +
Sbjct: 116 IDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTQDII 175

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
              ++   +   +   ++A   +A  + G  R A  LL +V  +
Sbjct: 176 GR-LKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISY 218


>gi|118443553|ref|YP_876996.1| ATP-dependent protease LA [Clostridium novyi NT]
 gi|118134009|gb|ABK61053.1| ATP-dependent protease LA [Clostridium novyi NT]
          Length = 598

 Score = 72.4 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 53/240 (22%), Positives = 86/240 (35%), Gaps = 56/240 (23%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +  +S+LRP +  E  GQ     +L      +K  +    H++  GPPG+GKTT A++  
Sbjct: 126 NNILSMLRPSSFSEIVGQERPIKSL-----ISKLASPYPQHIILYGPPGVGKTTAARLAL 180

Query: 76  RELG----------------------VNFRSTSGPVIAKA---------GDLAAL----- 99
            E+                        + R  + P++             DLA +     
Sbjct: 181 EEVKKLKHTPFGESAKFVEVDGTTLRWDPREIANPLLGSVHDPIYQGSKRDLAEIGVPEP 240

Query: 100 ----LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL----------DLMVGEGPSAR 145
               +T      VLFIDEI  L  I++  L   +ED ++          D  + +     
Sbjct: 241 KPGLVTEAHGG-VLFIDEIGELDTILQNKLLKVLEDKRVEFSSSYYDPDDENIPKYIKYL 299

Query: 146 SVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTD 205
                 + F LI ATTR     NP        +        D+K IV+  A    + + +
Sbjct: 300 FENGAPADFVLIGATTREPKDINPALRSRCTEVYFEPLSAGDIKNIVENAALRLNINLEE 359


>gi|167038580|ref|YP_001666158.1| DNA polymerase III subunits gamma and tau [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320116975|ref|YP_004187134.1| DNA polymerase III subunits gamma and tau [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
 gi|166857414|gb|ABY95822.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319930066|gb|ADV80751.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
          Length = 518

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 51/263 (19%), Positives = 92/263 (34%), Gaps = 27/263 (10%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
              RPR+ +E  GQ      LK  I+  K         LF G  G GKT++A++ A+ + 
Sbjct: 7   RKYRPRSFKEVVGQEHIVRTLKNQIKLKKIGHAY----LFTGTRGTGKTSVAKIFAKAVN 62

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII-----VEEILYPAMEDFQL 134
                   P  +   ++   + N    DVL ID     S+       E ++Y   +    
Sbjct: 63  CLNNKDGEPCNSC--EICQAINNNTTMDVLEIDAASNNSVNDVRELRESVIYAPSQAKYK 120

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             ++ E             ++++        I ATT    L + +  R            
Sbjct: 121 VYIIDEVHMLSTGAFNALLKTLEEPPPHVIFILATTEPDKLPDTILSRCQRFDFKRIPTR 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
             +   + R    +G+ + ++    IA+   G+ R A  LL +   + E      IT E 
Sbjct: 181 -LIAQNLDRICNDSGIKIEEKGLKTIAIYGNGSMRDAISLLEQCASYKE----GLITYED 235

Query: 246 ADAALLRLAIDKMG--FDQLDLR 266
               L     + +    D ++ +
Sbjct: 236 VCEMLGVANDEMLFSLLDYMNAK 258


>gi|324508707|gb|ADY43673.1| Replication factor C subunit 4 [Ascaris suum]
          Length = 354

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 62/278 (22%), Positives = 101/278 (36%), Gaps = 32/278 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RPR +++   Q E  S LK  ++ A      L ++LF GPPG GKT+ A  + R
Sbjct: 30  PWVEKYRPRKVDDIVFQDEVVSVLKKVLKGAD-----LPNLLFYGPPGTGKTSAAVALCR 84

Query: 77  ELGVNFRSTSGPVIA-KAGDLAAL------LTNLEDRDVL--FIDEIH--RLSIIVEEIL 125
           EL  N    S  V+   A D   +      +     R V     D  H   L +I+ +  
Sbjct: 85  ELFKNPDVYSDRVLEMNASDERGINIVRTRIKEFARRAVSSRLPDGSHVLGLKVIILDEA 144

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
               +  Q  L       +RS +  L           +  +  PL  R     R     +
Sbjct: 145 DAMTDAAQAALRRTMEKESRSTRFFL-------ICNYISRIIPPLTSRCA-KFRFKPLSL 196

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF------AEVAHAK 239
           E  K  ++   +   + V   A  E+     G  R +   L+ +         +EV H  
Sbjct: 197 ESQKERLEYICEQEDVEVEQAALIELIELCGGDLRRSVTHLQTMSSCHTKLTPSEVRHLS 256

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGG 277
               +     LL +  +++ FD++   Y+  I R   G
Sbjct: 257 GAVPDSVVRELLAVC-ERVNFDEM-FAYVESIRREGYG 292


>gi|308807567|ref|XP_003081094.1| replication factor C 37 kDa subunit (ISS) [Ostreococcus tauri]
 gi|116059556|emb|CAL55263.1| replication factor C 37 kDa subunit (ISS) [Ostreococcus tauri]
          Length = 342

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 62/323 (19%), Positives = 112/323 (34%), Gaps = 54/323 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA- 75
             +   RP+T+ +   Q +    L+  +E        + H LF GPPG GKTT A  +A 
Sbjct: 17  PWVEKYRPKTVRDVASQEQVVRVLEQALETG-----NMPHCLFYGPPGTGKTTCALAIAK 71

Query: 76  ------------RELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHR 116
                       +EL  +       V  K    A+L               +L +DE   
Sbjct: 72  QLYGPELYKQRVKELNASDERGISVVRDKVKTFASLAVGAPAPGYPSPPYKILILDEADA 131

Query: 117 LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
           ++   +  +   ME +                  ++RF L      V  + +P+  R   
Sbjct: 132 MTTDAQSAMRRMMETYS----------------KVTRFFL--LCNYVTKIIDPITSRCA- 172

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR------ 230
             R     +E + T ++  A+   L ++D+     +  S G  R A  LL+         
Sbjct: 173 KFRFQPLALETMTTRLKYIAEQESLELSDDVFPACSKHSGGDMRKAITLLQSAARLFSGK 232

Query: 231 -DFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGL 289
            D A +        ++    LL L      FD+       ++   + G  +  + +S  +
Sbjct: 233 VDAAGIVEVAGYIPDVKLTTLLDLC-KSGDFDKAQAHMEDILRDGYSGIKIM-DQLSDIV 290

Query: 290 SEPRDAIEDLIEPYMIQQGFIQR 312
            E   + E   + +M + G + R
Sbjct: 291 LEADCSDEIKGDIFM-KMGEVDR 312


>gi|197294665|ref|YP_001799206.1| DNA polymerase III, gamma/tau subunit [Candidatus Phytoplasma
           australiense]
 gi|171853992|emb|CAM11957.1| DNA polymerase III, gamma/tau subunit [Candidatus Phytoplasma
           australiense]
          Length = 602

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 47/243 (19%), Positives = 85/243 (34%), Gaps = 54/243 (22%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVAREL 78
              RP+T ++  GQ      LK  I     R + ++H  LF G  G GKTTLA++ A+ +
Sbjct: 10  RKYRPQTFQDVVGQKFIIQTLKNAI-----RYQKINHCYLFSGNKGTGKTTLAKIFAKVI 64

Query: 79  GVNFRST-----------------------SGPVIAKAGDLAALLTNLE------DRDVL 109
              +  +                        G       ++  +    +         V 
Sbjct: 65  NCIYPQSGDVCNKCTSCLGSLQTNNDIVELDGASYNGVDEIREIQDKAQYKPHIGKNKVY 124

Query: 110 FIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
            IDE+H L+      L   +E+                         I  TT++  +   
Sbjct: 125 IIDEVHVLTPNAFNALLKILEE------------------PPKHVVFILITTQMHKIPET 166

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           +  R           +E++   +++   L  + +TD+A  +IA  S G+ R A  LL ++
Sbjct: 167 ILSR-AQSFSFENLSLENIILQLKKITNLEKIVITDDAIKDIANYSEGSMRNALSLLDQI 225

Query: 230 RDF 232
             +
Sbjct: 226 SSY 228


>gi|310819971|ref|YP_003952329.1| DNA polymerase III subunits gamma and tau [Stigmatella aurantiaca
           DW4/3-1]
 gi|309393043|gb|ADO70502.1| DNA polymerase III, subunits gamma and tau [Stigmatella aurantiaca
           DW4/3-1]
          Length = 404

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 56/286 (19%), Positives = 101/286 (35%), Gaps = 28/286 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T ++ TGQ      +   I+  +         LF GP G+GKTT A+++A+ L    
Sbjct: 11  RPQTFDDMTGQEHIVRTIANAIKMDRVAHAY----LFCGPRGVGKTTAARLLAKALNCE- 65

Query: 83  RSTSGPVIAKAGDLAAL--LTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLD 135
               GP  +  G   A   +T+    DV  ID      +  +  I E   Y    D    
Sbjct: 66  ---QGPTASPCGTCRACTEITSGTSVDVAEIDGASNNGVENVREIRENAKYLPQRDRHKI 122

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             ++++        I ATT    L + +  R             
Sbjct: 123 YIIDEVHMLSGAAFNALLKTLEEPPGHVKFIFATTEAHKLPDTILSRCQ-RHNFRRIPAA 181

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
            +   +++  +  G  ++D +   +  +S G  R A  LL +V              E  
Sbjct: 182 RMLQRLKQICEAEGAGISDRSLSLVVRQSEGGMRDALSLLDQVLASCGAQPTDESVAEAL 241

Query: 247 DAALLRLAID-KMGFDQLD-LRYLTMIARNFGGGPVGIETISAGLS 290
            A    +  D      + D  + L  +   F  G + ++ ++  L+
Sbjct: 242 GAIDRTVVQDFAEALVRKDARKVLERVEETFNRG-LDLKRLAEELA 286


>gi|254520129|ref|ZP_05132185.1| sporulation protease LonB [Clostridium sp. 7_2_43FAA]
 gi|226913878|gb|EEH99079.1| sporulation protease LonB [Clostridium sp. 7_2_43FAA]
          Length = 557

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 61/266 (22%), Positives = 89/266 (33%), Gaps = 57/266 (21%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M     + S  ++Q   + S  RP   EE  GQ +    LK     A        HV+  
Sbjct: 42  MDKLNRMRSIQLTQPLTEKS--RPTKFEEIIGQEDGIKALK-----AALCGPNPQHVIIY 94

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDV------------ 108
           GPPG+GKT  A++V  E     +S      AK  ++ A     ++R +            
Sbjct: 95  GPPGVGKTAAARLVLEEAKKVEKSPFKK-DAKFIEIDATTIRFDERGIADPLIGSVHDPI 153

Query: 109 ---------------------------LFIDEIHRLSIIVEEILYPAMEDFQLDL----M 137
                                      LF+DEI  L  I    L   +ED ++ L     
Sbjct: 154 YQGAGSLGVAGIPQPKPGAVTKAHGGMLFMDEIGELHPIELNKLLKVLEDRKVFLDSSYY 213

Query: 138 VGEGPSARSV------KINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
             E P+              + F LI ATTR      P      + I       E++KTI
Sbjct: 214 SSENPNMPDYIKEIFDNGLPADFRLIGATTRSPEEIVPAIRSRCVEIFFRSLHPEEIKTI 273

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRG 217
            +  A   GL + D+    I+     
Sbjct: 274 GKNAANKVGLEIDDKCLDLISKYCTN 299


>gi|301768619|ref|XP_002919725.1| PREDICTED: replication factor C subunit 5-like [Ailuropoda
           melanoleuca]
          Length = 340

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 74/225 (32%), Gaps = 38/225 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA- 75
             +   RP+TL +     +  S ++ FI       + L H+L  GPPG GKT+     A 
Sbjct: 21  PWVEKYRPQTLNDLISHQDILSTIQKFIS-----EDRLPHLLLYGPPGTGKTSTILACAK 75

Query: 76  -----RELGVNFRSTSGPVIAKAGDLAA-LLTNLEDRDVL-------FIDEIHRLSIIVE 122
                +E G      +         +   +L+    R +         +DE   ++   +
Sbjct: 76  QLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQ 135

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             L   +E F       E      +   LS+                LQ R     R   
Sbjct: 136 NALRRVIEKF------TENTRFCLICNYLSKIIP------------ALQSRC-TRFRFGP 176

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
              E +   ++   K   + ++++    +   + G  R A  +L+
Sbjct: 177 LTPELMVPRLEHVIKEEKVDLSEDGMKALVTLASGDMRRALNILQ 221


>gi|229543650|ref|ZP_04432710.1| ATP-dependent protease LonB [Bacillus coagulans 36D1]
 gi|229328070|gb|EEN93745.1| ATP-dependent protease LonB [Bacillus coagulans 36D1]
          Length = 545

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 58/296 (19%), Positives = 99/296 (33%), Gaps = 57/296 (19%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M++   L R +S        +RP    +  GQ +    L+     A        H +  G
Sbjct: 44  MEQLRKL-REISLSVPLSERVRPAAFADIVGQEDGIKALR-----AALCGPNPQHCIIYG 97

Query: 62  PPGLGKTTLAQVVARELGVNFRSTS----------------------GPVIAKAGD---- 95
           PPG+GKT  A++V  E   N +S                         P+I    D    
Sbjct: 98  PPGVGKTAAARLVLEEAKKNPKSPFQRDAVFVELDATTARFDERGIADPLIGSVHDPIYQ 157

Query: 96  -------------LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG-EG 141
                            +T+     VLFIDEI  L  I    L   +ED ++ L      
Sbjct: 158 GAGAMGQAGIPQPKQGAVTSAHGG-VLFIDEIGELHPIQMNKLLKVLEDRKVFLESAYYN 216

Query: 142 PSARSVKINL---------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           P  R +  ++         + F LI ATTR             + +     +  ++K + 
Sbjct: 217 PENREIPHHIHDIFQNGLPADFRLIGATTRTPKEIPAAIRSRCMEVFFRELDRGEIKQVA 276

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           ++ A    +A+++     +A  ++   R A  +++     A       I  E  + 
Sbjct: 277 KKAADKIHMAISENGLDILAQYTQN-GREAVNMVQIAAGLAIQEGQDFIREEDLEW 331


>gi|1527142|gb|AAC97558.1| DNA polymerase III gamma subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium]
          Length = 430

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 52/306 (16%), Positives = 108/306 (35%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++   +    + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +A    A   ++  + G+ R A  L     D A  +    ++ +   A
Sbjct: 184 RHQLEHILNEEHIAHEPRALQLLSRAADGSLRDALSL----TDQASSSGDGQVSTQAVSA 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L  D+       L  +  +    G   + +   +A      +A+   +   + +  
Sbjct: 240 MLGTLDDDQA------LSLVEAVVDANGERVMSLINEAAARGIEWEALLVEMLSLLHRIA 293

Query: 309 FIQRTP 314
            +Q +P
Sbjct: 294 MVQLSP 299


>gi|309355067|emb|CAP39425.2| CBR-RFC-2 protein [Caenorhabditis briggsae AF16]
          Length = 329

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 84/249 (33%), Gaps = 40/249 (16%)

Query: 8   LSRNVSQEDAD-ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           +S+    E A  +   RP+ L +  G       LKV      A+   + +++  GPPG G
Sbjct: 1   MSKAQKNELAPWVEKYRPQILADIVGNENIVERLKVI-----AKEGNVPNIILSGPPGCG 55

Query: 67  KTTLAQVVAR------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFID 112
           KTT    +AR            EL  +       V  +    A     L      ++ +D
Sbjct: 56  KTTSVWALARELLGDKVKDAVLELNASDERGIDVVRNRIKTFAQTRVTLPEGRHKIIILD 115

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E   ++   ++ L   ME +                   +RF    A  +   +  P+Q 
Sbjct: 116 EADSMTEGAQQALRRTMEIYSKT----------------TRF--ALACNQSEKIIEPIQS 157

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR-RVRD 231
           R  +         E +  +V+  AK   +   D     I   ++G  R A   L+  V  
Sbjct: 158 RCALLRYTKLTAAELMSRVVE-VAKAEDVNHDDGGLEAILFTAQGDMRQALNNLQATVNA 216

Query: 232 FAEVAHAKT 240
           + +V     
Sbjct: 217 YEQVNKENV 225


>gi|296120960|ref|YP_003628738.1| DNA polymerase III, subunits gamma and tau [Planctomyces
           limnophilus DSM 3776]
 gi|296013300|gb|ADG66539.1| DNA polymerase III, subunits gamma and tau [Planctomyces
           limnophilus DSM 3776]
          Length = 682

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 60/341 (17%), Positives = 110/341 (32%), Gaps = 44/341 (12%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           NV          RP+T  E  GQ      L+  I   +         LF G  G+GKT++
Sbjct: 2   NVENYTVLARRFRPQTFSEVVGQDRIAQTLRNAILEGRVAHAY----LFTGARGVGKTSM 57

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIH------------RLS 118
           A++ A+ L          V     ++   ++  +D DV  ID                ++
Sbjct: 58  ARIFAKALNCPNAVE--AVPCNTCEICRAVSAGQDVDVSEIDGASNRGIDDIRTLRANVN 115

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSR--FTLIAATTRVGLLTNPLQDRFGI 176
           +      Y      ++ ++  E  +A    +         I  TT    L + +  R   
Sbjct: 116 VKSMRTRYKVYIIDEVHMLTKEAFNALLKTLEEPPQGVKFIFCTTEPNKLPDTILSRCQ- 174

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
                   IE +   +++ A   G  V DEA   ++ R+ G+ R +  L  +V  F    
Sbjct: 175 RFDFGTVNIESIGERLRQIANTEGFQVDDEAIELVSRRANGSMRDSQSLFDQVLAF---- 230

Query: 237 HAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAI 296
             + +T       L   + D++      +  +  +        +     +       DA+
Sbjct: 231 GHQHVTVADVHRLLGTASDDRV------IELVQALIDRHAARALEALDQAILDGVQLDAL 284

Query: 297 EDLIEPYM------------IQQGFIQRTPRGRLLMPI-AW 324
            D +  Y+            I       + R R+     AW
Sbjct: 285 TDQLISYLRDLMVTAAGVKGIALLGATESSRSRVETQAEAW 325


>gi|14325757|dbj|BAB60660.1| replication factor C subunit [Thermoplasma volcanium GSS1]
          Length = 330

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 58/238 (24%), Positives = 93/238 (39%), Gaps = 37/238 (15%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +      RP++L E  G+ E    LK F+E      + L H+LF G  G GKT+ A  +A
Sbjct: 15  EIWTEKYRPKSLSEIYGEDENIQKLKSFVE-----KKELPHLLFAGSVGTGKTSTAIALA 69

Query: 76  RE-----LGVNFRSTSGP-------VIAKAGDLAALL-TNLEDRDVLFIDEIHRLSIIVE 122
            E        NF   +         +  K  D+A +  +N     +LF+DE  +L+   +
Sbjct: 70  IELFGESWKENFIEMNASNENGIDVIRNKIKDIARIRPSNPLGFKILFLDEADQLTAEAQ 129

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             L   ME +                   +RF    A      +  P+Q R  + +R   
Sbjct: 130 AALRRTMEMYSET----------------TRFVF--ACNYSSKIIPPIQSR-TVVMRFRP 170

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            + E +K  +   AK  G  + DE+   +   S G  R A  +L+ V    E++  K 
Sbjct: 171 VQDEFIKKKLNEIAKNEGFTIDDESMEAMVEVSGGDMRKAINVLQAVYTSGEISPKKI 228


>gi|330996185|ref|ZP_08320075.1| DNA polymerase III, subunit gamma and tau [Paraprevotella
           xylaniphila YIT 11841]
 gi|329573689|gb|EGG55280.1| DNA polymerase III, subunit gamma and tau [Paraprevotella
           xylaniphila YIT 11841]
          Length = 604

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 45/211 (21%), Positives = 70/211 (33%), Gaps = 40/211 (18%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP   +   GQ    + LK  I A K         LF GP G+GKTT A++ A+ +
Sbjct: 8   ARKYRPSAFDAVVGQEALTTTLKNAIAAGKLAHAY----LFCGPRGVGKTTCARIFAKTI 63

Query: 79  GVNFRSTSGPVIAK-------------------------AGDLAALLT------NLEDRD 107
                S +G    +                           ++ AL+        +    
Sbjct: 64  NCLHPSGNGEACDECESCKAFNEQRSLNIHELDAASNNSVEEIRALIEKVRIPPQVGRYK 123

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTR-VG 164
           V  IDE+H LS          +E+    +  ++      + +   LSR  +       V 
Sbjct: 124 VFIIDEVHMLSTAAFNAFLKTLEEPPSYVIFILATTEKHKILPTILSRCQVYDFNRMSVQ 183

Query: 165 LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
            + N L  +F        YE E L  I Q+ 
Sbjct: 184 AIVNHL--KFVADKEGYAYEPEALNIIAQKA 212


>gi|302872503|ref|YP_003841139.1| DNA polymerase III, subunits gamma and tau [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302575362|gb|ADL43153.1| DNA polymerase III, subunits gamma and tau [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 534

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 90/236 (38%), Gaps = 25/236 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP+  E+   Q      LK  I+  K         +F GP G GKTT A++++R
Sbjct: 4   ALYRKYRPKVFEDVVAQDHITKTLKNQIKQDKVAHAY----IFCGPRGTGKTTTAKIMSR 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHRLSII-----VEEILYPAM 129
            +         P      +     + L+++   VL ID     S+       +E+ YP  
Sbjct: 60  AVNCLNPKDGNP----CNECEVCRSILDEKTLDVLEIDAASNTSVNDVRQIRDEVRYPPS 115

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
              +   ++ E             ++++   S    I ATT +  +   +  R       
Sbjct: 116 MCKKKVYIIDEVHMLSTGAFNALLKTIEEPPSHALFILATTDIQKVPATILSRCQ-RFDF 174

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
               ++D+   +++  ++  +++ D A   I+ ++ G  R A  +L R  + ++  
Sbjct: 175 KRISVKDIYERLKKIVQMENISIDDNALYLISQKAEGALRDALTILERCINTSDEH 230


>gi|189501776|ref|YP_001957493.1| hypothetical protein Aasi_0331 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497217|gb|ACE05764.1| hypothetical protein Aasi_0331 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 629

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 55/305 (18%), Positives = 100/305 (32%), Gaps = 34/305 (11%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH-VLFVGPPGLGKTTLAQVVARE 77
               RP       GQ    + LK  I     R   L H  LF GP G+GKTT A+++A+ 
Sbjct: 8   ARKYRPSVFSHVLGQAHITTTLKNAI-----RTNHLAHAFLFCGPRGVGKTTCARILAKA 62

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL-----YPAMEDF 132
           +     +        A D           ++  +D     S+     L     YP     
Sbjct: 63  INCQQLTADIE-PCNACDSCKSFNQRTSFNIYELDAASNNSVEDVRSLVDQVRYPPQNGA 121

Query: 133 QLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
               ++ E             ++++   S    I ATT    +   +  R  I       
Sbjct: 122 YKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKVLPTILSRCQI-FDFQRI 180

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           + ED+   ++  ++   +   +EA   I++++ G  R A  +   +  F         T 
Sbjct: 181 KPEDIVQQLKNVSEQEHIPYDEEALHLISLKADGALRDALSMFDVIVSFGAGKLTYEATL 240

Query: 244 EIADAALLRLAIDKM--GFDQLDLR----YLTMIARNFGGGPVGIETISA-----GLSEP 292
           E     L      K+     Q D++        I ++   G   +E + A      +++ 
Sbjct: 241 ENLHI-LDYSCYFKLTEAILQNDIKACLLIYDEIIQSGFDGLYFLEGLVAHFRSLLVAQD 299

Query: 293 RDAIE 297
              + 
Sbjct: 300 PQTLP 304


>gi|304372902|ref|YP_003856111.1| DNA polymerase III gamma and tau subunit [Mycoplasma hyorhinis
           HUB-1]
 gi|304309093|gb|ADM21573.1| DNA polymerase III gamma and tau subunit [Mycoplasma hyorhinis
           HUB-1]
          Length = 712

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 75/233 (32%), Gaps = 44/233 (18%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
              RP TL +  GQ      LK  I    +  +     LF GP G GKT++A++ A  L 
Sbjct: 10  RKYRPTTLVDVVGQDFIIQTLKNII----STNQIFHAYLFSGPRGTGKTSVAKIFATTLN 65

Query: 80  VNFRS---------------------TSGPVIAKAGDLAALLTNL------EDRDVLFID 112
            + ++                       G       ++  L+ N+          +  ID
Sbjct: 66  CSHKTDLFIPCQKCQDSVNNSFDIIEMDGASNNGVDEIRELINNVNNLPTNSQYKIYIID 125

Query: 113 EIHRLSIIVEEILYPAMED--FQLDLMVGEGPSARSVKINLSR-----FTLIAATTRVGL 165
           E+H LS          +E+    +  ++    + +     LSR     F  I+    V  
Sbjct: 126 EVHMLSSSAFNAFLKTLEEPPKYVIFILATTEAHKIPLTILSRVQRFNFRKISEKEIVSR 185

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGT 218
           L   L+           YE E L  I Q  +     A+          RS+  
Sbjct: 186 LEYVLEKE------EISYEKEALWAIAQLSSGSLRDALAMVEQLNNFSRSKIH 232


>gi|254773386|ref|ZP_05214902.1| DNA polymerase III subunits gamma and tau [Mycobacterium avium
           subsp. avium ATCC 25291]
          Length = 612

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 49/237 (20%), Positives = 82/237 (34%), Gaps = 23/237 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T  E  GQ      L + +EA +         LF GP G GKT+ A+++AR
Sbjct: 2   ALYRKYRPATFAEVVGQEHVTEPLSIALEAGRINHAY----LFSGPRGCGKTSSARILAR 57

Query: 77  ELGVNFRSTSGPVIAKAGD--LAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PA 128
              +N             D  LA         DV+ +D      +     L       PA
Sbjct: 58  S--LNCVQGPTATPCGVCDSCLALAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPA 115

Query: 129 MEDFQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
              +++ ++         G     + V+        I ATT    +   ++ R       
Sbjct: 116 QSRYRVFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSR-THHYPF 174

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                + ++ ++ R  +  G+ V D     +     G+PR    +L ++   AE  H
Sbjct: 175 RLLPPKTMRALIGRICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLVAGAEGGH 231


>gi|239611536|gb|EEQ88523.1| DNA replication factor C subunit Rfc2 [Ajellomyces dermatitidis
           ER-3]
          Length = 389

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 46/242 (19%), Positives = 81/242 (33%), Gaps = 53/242 (21%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+TL++   Q    + L+  ++A+      L H+LF GPPG GKT+    +A+
Sbjct: 34  PWVEKYRPKTLDDVASQEHTVTVLQRTLQAS-----NLPHMLFYGPPGTGKTSTILALAK 88

Query: 77  -------------ELGVNFRSTSGPVIAKAGDLAALLTNL--------------EDRDVL 109
                        EL  +       V  K  D A +  +                   ++
Sbjct: 89  SLFGPQLYRSRILELNASDERGISIVREKIKDFARMQLSHPPASDSAYRETYPCPPFKII 148

Query: 110 FIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA-TTRVGLLTN 168
            +DE   ++   +  L   ME +                   SR T        V  + +
Sbjct: 149 ILDEADSMTQDAQSALRRTMERY-------------------SRITRFCLVCNYVTRIID 189

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
           PL  R     R    +     + +++ A++  L + D     +   S G  R A   L+ 
Sbjct: 190 PLASRCS-KFRFKALDGSAAGSRLEKIARVEKLKLADGCVETLIRCSEGDLRRAITYLQS 248

Query: 229 VR 230
             
Sbjct: 249 AA 250


>gi|261205028|ref|XP_002627251.1| DNA replication factor C subunit Rfc2 [Ajellomyces dermatitidis
           SLH14081]
 gi|239592310|gb|EEQ74891.1| DNA replication factor C subunit Rfc2 [Ajellomyces dermatitidis
           SLH14081]
 gi|327348452|gb|EGE77309.1| DNA replication factor C subunit Rfc2 [Ajellomyces dermatitidis
           ATCC 18188]
          Length = 389

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 46/242 (19%), Positives = 81/242 (33%), Gaps = 53/242 (21%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+TL++   Q    + L+  ++A+      L H+LF GPPG GKT+    +A+
Sbjct: 34  PWVEKYRPKTLDDVASQEHTVTVLQRTLQAS-----NLPHMLFYGPPGTGKTSTILALAK 88

Query: 77  -------------ELGVNFRSTSGPVIAKAGDLAALLTNL--------------EDRDVL 109
                        EL  +       V  K  D A +  +                   ++
Sbjct: 89  SLFGPQLYRSRILELNASDERGISIVREKIKDFARMQLSHPPASDSAYRETYPCPPFKII 148

Query: 110 FIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA-TTRVGLLTN 168
            +DE   ++   +  L   ME +                   SR T        V  + +
Sbjct: 149 ILDEADSMTQDAQSALRRTMERY-------------------SRITRFCLVCNYVTRIID 189

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
           PL  R     R    +     + +++ A++  L + D     +   S G  R A   L+ 
Sbjct: 190 PLASRCS-KFRFKALDGSAAGSRLEKIARVEKLKLADGCVETLIRCSEGDLRRAITYLQS 248

Query: 229 VR 230
             
Sbjct: 249 AA 250


>gi|238810245|dbj|BAH70035.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 612

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 49/273 (17%), Positives = 81/273 (29%), Gaps = 56/273 (20%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPG 64
             L R +    A     RP++ ++  GQ      LK  I         + H  LF GP G
Sbjct: 2   NYLERGIMAYKALYRKYRPKSFDDVKGQDHIVQTLKNII-----LNHKISHAYLFSGPRG 56

Query: 65  LGKTTLAQVVAR---------------------ELGVNFRSTSGPVIAKAGDLAALLTNL 103
           +GKT++A++ A                      +   +             ++  L   +
Sbjct: 57  VGKTSVAKIFANVVNCGHGEDLTKLCESCIEKADQNFDVIEMDAASNNGVNEIRDLRDKI 116

Query: 104 EDRD------VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLI 157
           +         V  IDE+H LS      L   +E+          P A ++ I        
Sbjct: 117 QHSPASGNYKVYIIDEVHMLSKGAFNALLKTLEE----------PPAHAIFIL------- 159

Query: 158 AATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRG 217
            ATT    +   +  R            + L   ++       +   D     IA  + G
Sbjct: 160 -ATTDPQKIPLTILSRVQ-RYNFRKISNQVLINQIKEVLDKEKIKYEDSTIAYIARLATG 217

Query: 218 TPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
             R A  +     D A       I+ +    A 
Sbjct: 218 GMRDALSI----VDQAAAYGNDKISLKDVMYAF 246


>gi|332164786|ref|NP_001193730.1| replication factor C subunit 5 isoform 4 [Homo sapiens]
 gi|208967278|dbj|BAG73653.1| replication factor C [synthetic construct]
          Length = 337

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 74/225 (32%), Gaps = 38/225 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA- 75
             +   RP+TL +     +  S ++ FI       + L H+L  GPPG GKT+     A 
Sbjct: 21  PWVEKYRPQTLNDLISHQDILSTIQKFI-----NEDRLPHLLLYGPPGTGKTSTILACAK 75

Query: 76  -----RELGVNFRSTSGPVIAKAGDLAA-LLTNLEDRDVL-------FIDEIHRLSIIVE 122
                +E G      +         +   +L+    R +         +DE   ++   +
Sbjct: 76  QLYKDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQ 135

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             L   +E F       E      +   LS+                LQ R     R   
Sbjct: 136 NALRRVIEKF------TENTRFCLICNYLSKIIP------------ALQSRC-TRFRFGP 176

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
              E +   ++   +   + ++++    +   S G  R A  +L+
Sbjct: 177 LTPELMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNILQ 221


>gi|268576228|ref|XP_002643094.1| C. briggsae CBR-RFC-2 protein [Caenorhabditis briggsae]
          Length = 328

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 84/249 (33%), Gaps = 40/249 (16%)

Query: 8   LSRNVSQEDAD-ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           +S+    E A  +   RP+ L +  G       LKV      A+   + +++  GPPG G
Sbjct: 1   MSKAQKNELAPWVEKYRPQILADIVGNENIVERLKVI-----AKEGNVPNIILSGPPGCG 55

Query: 67  KTTLAQVVAR------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFID 112
           KTT    +AR            EL  +       V  +    A     L      ++ +D
Sbjct: 56  KTTSVWALARELLGDKVKDAVLELNASDERGIDVVRNRIKTFAQTRVTLPEGRHKIIILD 115

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E   ++   ++ L   ME +                   +RF    A  +   +  P+Q 
Sbjct: 116 EADSMTEGAQQALRRTMEIYSKT----------------TRF--ALACNQSEKIIEPIQS 157

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR-RVRD 231
           R  +         E +  +V+  AK   +   D     I   ++G  R A   L+  V  
Sbjct: 158 RCALLRYTKLTAAELMSRVVE-VAKAEDVNHDDGGLEAILFTAQGDMRQALNNLQATVNA 216

Query: 232 FAEVAHAKT 240
           + +V     
Sbjct: 217 YEQVNKENV 225


>gi|317129826|ref|YP_004096108.1| Sigma 54 interacting domain protein [Bacillus cellulosilyticus DSM
           2522]
 gi|315474774|gb|ADU31377.1| Sigma 54 interacting domain protein [Bacillus cellulosilyticus DSM
           2522]
          Length = 559

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 55/281 (19%), Positives = 93/281 (33%), Gaps = 56/281 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                +RP++  +  GQ +   +LK     A        HV+  GPPG+GKT  A++V  
Sbjct: 58  PLSEKIRPQSFSDIVGQEDGIRSLK-----AALCGPNPQHVIIYGPPGVGKTAAARLVLN 112

Query: 77  ELGVNFRSTSG----------------------PVIAKAGD-----------------LA 97
           E   N  S                         P+I    D                   
Sbjct: 113 EAKRNPLSPFKEKSTFVELDGATARFDERGIADPLIGSVHDPIYQGAGAMGQAGIPQPKQ 172

Query: 98  ALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL----MVGEGPSARSVKINL-- 151
             +T      +LFIDEI  L  I    L   +ED ++ L       E         ++  
Sbjct: 173 GAVTKAHGG-ILFIDEIGELHSIQLNKLLKVLEDRKVFLESAYYSEENTQIPDHIHDIFK 231

Query: 152 ----SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEA 207
               + F LI+ATTR      P      + +     +  ++ T+ ++  K  G+   +  
Sbjct: 232 NGLPADFRLISATTRQPEEIPPAIRSRCMEVYFRPLKPSEICTVAEKSLKRIGIGAEEGV 291

Query: 208 ACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
               A  +    R A  +++     A  A    I+++  + 
Sbjct: 292 LELTAKYATN-GREAVNIIQLAAGMATSASRDLISKKDVEW 331


>gi|321265444|ref|XP_003197438.1| DNA replication factor [Cryptococcus gattii WM276]
 gi|317463918|gb|ADV25651.1| DNA replication factor, putative [Cryptococcus gattii WM276]
          Length = 373

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 77/226 (34%), Gaps = 37/226 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP +L++     +    ++ FIEA +     L H+LF GPPG GKT+    +AR
Sbjct: 55  PWVEKYRPVSLDDVVSHKDITGTIEKFIEAGR-----LPHLLFYGPPGTGKTSTVLALAR 109

Query: 77  -----ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLF--------IDEIHRLSIIVEE 123
                    +    +         +   + N     VLF        +DE   ++   + 
Sbjct: 110 RLYGSAYKKHILELNASDDRGIDVVREQIKNFAMTKVLFSKGFKLVILDEADMMTQAAQS 169

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
            L   +E                                V  +T  +Q R     R +  
Sbjct: 170 ALRRVIEQHT------------------KNVRFCILCNYVNKITPAIQSRC-TRFRFSPL 210

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
             ++++  V    +  G+ +T++    +   SRG  R A  +L+  
Sbjct: 211 PEKEIQVKVDEVVQKEGVNLTEDGRDALLKLSRGDMRRALNVLQAC 256


>gi|110625924|ref|NP_082404.1| replication factor C subunit 5 [Mus musculus]
 gi|30913281|sp|Q9D0F6|RFC5_MOUSE RecName: Full=Replication factor C subunit 5; AltName:
           Full=Activator 1 36 kDa subunit; Short=A1 36 kDa
           subunit; AltName: Full=Activator 1 subunit 5; AltName:
           Full=Replication factor C 36 kDa subunit; Short=RF-C 36
           kDa subunit; Short=RFC36
 gi|12847646|dbj|BAB27652.1| unnamed protein product [Mus musculus]
 gi|57242935|gb|AAH89001.1| Replication factor C (activator 1) 5 [Mus musculus]
 gi|74206797|dbj|BAE41638.1| unnamed protein product [Mus musculus]
 gi|148687857|gb|EDL19804.1| mCG8761 [Mus musculus]
          Length = 339

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 74/225 (32%), Gaps = 38/225 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA- 75
             +   RP+TL +     +  S ++ FI       + L H+L  GPPG GKT+     A 
Sbjct: 20  PWVEKYRPQTLADLISHQDILSTIQKFIS-----EDRLPHLLLYGPPGTGKTSTILACAK 74

Query: 76  -----RELGVNFRSTSGPVIAKAGDLAA-LLTNLEDRDVL-------FIDEIHRLSIIVE 122
                +E G      +         +   +L+    R +         +DE   ++   +
Sbjct: 75  QLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQ 134

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             L   +E F       E      +   LS+                LQ R     R   
Sbjct: 135 NALRRVIEKF------TENTRFCLICNYLSKIIP------------ALQSRC-TRFRFGP 175

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
              E +   ++   +   + ++++    +   S G  R A  +L+
Sbjct: 176 LTPELMVPRLEHVVQEENVDISEDGMKALVTLSSGDMRRALNILQ 220


>gi|74211816|dbj|BAE29258.1| unnamed protein product [Mus musculus]
          Length = 339

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 74/225 (32%), Gaps = 38/225 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA- 75
             +   RP+TL +     +  S ++ FI       + L H+L  GPPG GKT+     A 
Sbjct: 20  PWVEKYRPQTLADLISHQDILSTIQKFIS-----EDRLPHLLLYGPPGTGKTSTILACAK 74

Query: 76  -----RELGVNFRSTSGPVIAKAGDLAA-LLTNLEDRDVL-------FIDEIHRLSIIVE 122
                +E G      +         +   +L+    R +         +DE   ++   +
Sbjct: 75  QLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQ 134

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             L   +E F       E      +   LS+                LQ R     R   
Sbjct: 135 NALRRVIEKF------TENTRFCLICNYLSKIIP------------ALQSRC-TRFRFGP 175

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
              E +   ++   +   + ++++    +   S G  R A  +L+
Sbjct: 176 LTPELMVPRLEHVVQEENVDISEDGMKALVTLSSGDMRRALNILQ 220


>gi|296184879|ref|ZP_06853290.1| ATP-dependent protease LonB [Clostridium carboxidivorans P7]
 gi|296050661|gb|EFG90084.1| ATP-dependent protease LonB [Clostridium carboxidivorans P7]
          Length = 554

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 61/300 (20%), Positives = 97/300 (32%), Gaps = 58/300 (19%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M + + L  RN+   +      RP    E  GQ +    L+     A        HV+  
Sbjct: 37  MENLKRL--RNIKLTEPLTEKSRPSDFNEIIGQEKGIKALQ-----AALCGPNPQHVIIY 89

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------------- 106
           GPPG+GKT  A++V +       S    V +K  ++ A     +DR              
Sbjct: 90  GPPGVGKTAAARLVLKYAKKKSYSPFTEV-SKFIEIDATTIRFDDRGIADPLIGSVHDPI 148

Query: 107 -------------------------DVLFIDEIHRLSIIVEEILYPAMEDFQLDL----M 137
                                     +LFIDEI  L  I    L   +ED ++ L     
Sbjct: 149 YQGAGPLGVAGIPQPKPGAVTKAHGGILFIDEIGELHHIEMNKLLKVLEDRKVFLDSSYY 208

Query: 138 VGEGPSARSVKINL------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
                +  +   ++      + F L+ ATTR      P      + +       E++KTI
Sbjct: 209 NSSDTNMPTYIKDIFENGLPADFRLVGATTRNPEEITPALRSRCVEVFFRALNPEEIKTI 268

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
                   G  + D+A   +        R A  L++     A       IT E  +  + 
Sbjct: 269 ALNAVNKIGFNIDDKACSMVGKYCEN-GRDAVNLIQLASGIALNEDRNNITIEDVEWVIE 327


>gi|168217822|ref|ZP_02643447.1| ATP-dependent protease LonB [Clostridium perfringens NCTC 8239]
 gi|182380131|gb|EDT77610.1| ATP-dependent protease LonB [Clostridium perfringens NCTC 8239]
          Length = 570

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 66/330 (20%), Positives = 108/330 (32%), Gaps = 64/330 (19%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP  LEE  GQ +    LK     A        HV+  GPPG+GKT  A+++  E     
Sbjct: 64  RPSNLEEIIGQEKGIKALK-----AALCGPNPQHVIIYGPPGVGKTAAARIILEEAKKMA 118

Query: 83  RSTSG------------------------------PVIAKAGDLA---------ALLTNL 103
            S                                 P+   AG L            +T  
Sbjct: 119 ASPFNKDSKFVEIDATTLRFDERGIADPLIGSVHDPIYQGAGSLGIAGVPQPKPGAVTKA 178

Query: 104 EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL----MVGEGPSARSV------KINLSR 153
               +LFIDEI  L  I    L   +ED ++ L       E P+              + 
Sbjct: 179 HGG-ILFIDEIGELHPIELNKLLKVLEDRKVFLDSAYYSSEDPNTPRYIKEIFDNGLPAD 237

Query: 154 FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAM 213
           F LI ATTR      P      + I      +E+++ I        G  ++DE    ++ 
Sbjct: 238 FRLIGATTRSPEEIVPAIRSRCVEIFFRGLTVEEIRKIALNATNKVGYRISDEGLDIVSR 297

Query: 214 RSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA-----IDKMGFDQLDLRYL 268
                  +    L ++     +   +   +E     ++        +++M  D+ ++ Y+
Sbjct: 298 YCTNGREVIN--LVQLCSGLAINENRDYIKESDIYWVIENGQYNPRMERMINDKHEIGYV 355

Query: 269 TMIARNF--GGGPVGIETISAGLSEPRDAI 296
             +A      G  + IE  +   S    +I
Sbjct: 356 NGLAVYGANNGALMEIEATAKLSSNSIGSI 385


>gi|330723510|gb|AEC45880.1| DNA polymerase III subunits gamma and tau [Mycoplasma hyorhinis
           MCLD]
          Length = 712

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 75/233 (32%), Gaps = 44/233 (18%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
              RP TL +  GQ      LK  I    +  +     LF GP G GKT++A++ A  L 
Sbjct: 10  RKYRPTTLVDVVGQDFIIQTLKNII----STNQIFHAYLFSGPRGTGKTSVAKIFATTLN 65

Query: 80  VNFRS---------------------TSGPVIAKAGDLAALLTNL------EDRDVLFID 112
            + ++                       G       ++  L+ N+          +  ID
Sbjct: 66  CSHKTDLFIPCQKCQDSVNNSFDIIEMDGASNNGVDEIRELINNVNNLPTNSQYKIYIID 125

Query: 113 EIHRLSIIVEEILYPAMED--FQLDLMVGEGPSARSVKINLSR-----FTLIAATTRVGL 165
           E+H LS          +E+    +  ++    + +     LSR     F  I+    V  
Sbjct: 126 EVHMLSSSAFNAFLKTLEEPPKHVIFILATTEAHKIPLTILSRVQRFNFRKISEKEIVSR 185

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGT 218
           L   L+           YE E L  I Q  +     A+          RS+  
Sbjct: 186 LEYVLEKE------EISYEKEALWAIAQLSSGSLRDALAMVEQLNNFSRSKIH 232


>gi|118462751|ref|YP_879667.1| DNA polymerase III subunits gamma/tau [Mycobacterium avium 104]
 gi|48928138|gb|AAT47747.1| probable DNA polymerase III gamma [Mycobacterium avium]
 gi|118164038|gb|ABK64935.1| DNA polymerase III gamma/tau subunit [Mycobacterium avium 104]
          Length = 608

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 49/237 (20%), Positives = 82/237 (34%), Gaps = 23/237 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T  E  GQ      L + +EA +         LF GP G GKT+ A+++AR
Sbjct: 2   ALYRKYRPATFAEVVGQEHVTEPLSIALEAGRINHAY----LFSGPRGCGKTSSARILAR 57

Query: 77  ELGVNFRSTSGPVIAKAGD--LAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PA 128
              +N             D  LA         DV+ +D      +     L       PA
Sbjct: 58  S--LNCVQGPTATPCGVCDSCLALAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPA 115

Query: 129 MEDFQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
              +++ ++         G     + V+        I ATT    +   ++ R       
Sbjct: 116 QSRYRVFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSR-THHYPF 174

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                + ++ ++ R  +  G+ V D     +     G+PR    +L ++   AE  H
Sbjct: 175 RLLPPKTMRALIGRICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLVAGAEGGH 231


>gi|332192020|gb|AEE30141.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
          Length = 332

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 49/237 (20%), Positives = 82/237 (34%), Gaps = 39/237 (16%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           ++  +      +   RP+ +++   Q E    L   ++ A        H+LF GPPG GK
Sbjct: 1   MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADC-----PHMLFYGPPGTGK 55

Query: 68  TTLAQVVAR------ELGVNFRSTSGPVIAKAGDLAALLTNLEDR---------DVLFID 112
           TT A  +A       EL  +       V  K  D AA+      R          ++ +D
Sbjct: 56  TTTALAIAHQLFGVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILD 115

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E   ++   +  L   ME +                  ++RF  I     +  +  PL  
Sbjct: 116 EADSMTEDAQNALRRTMETYS----------------KVTRFFFIC--NYISRIIEPLAS 157

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           R     R      E +   +       GL++  EA   ++  S+G  R A   L+  
Sbjct: 158 RCA-KFRFKPLSEEVMSNRILHICNEEGLSLDGEALSTLSSISQGDLRRAITYLQSA 213


>gi|326429717|gb|EGD75287.1| replication factor C subunit 5 [Salpingoeca sp. ATCC 50818]
          Length = 330

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 71/234 (30%), Gaps = 37/234 (15%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           + S   +     +   RP +L++     E    ++ F++  +     L H+LF GPPG G
Sbjct: 1   MTSSAPTTNLPWVEKYRPDSLDQLVSHKEIIDTIQRFVDEKR-----LPHLLFYGPPGTG 55

Query: 67  KTTLAQVVA-----RELGVNFRSTSGPVIAKAGDLAALLTN-LEDRDVL-------FIDE 113
           KT+  +  A     +         +       G +   +      + V         +DE
Sbjct: 56  KTSTIKACAKQLYGKAYKSMVLELNASDDRGIGVVREQIKTFASTKTVFSAGFKLIILDE 115

Query: 114 IHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
              ++   +  L   +E +                              V  ++  LQ R
Sbjct: 116 ADAMTNDAQAALRRVIEKYT------------------KHTRFCLICNYVSKISPALQSR 157

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
                R      E +   VQR      +  T      +   + G  R A  +L+
Sbjct: 158 C-TRFRFAPLATEHMIQQVQRVIDAEHIETTPAGIEALVKLASGDMRKALNILQ 210


>gi|170756440|ref|YP_001782868.1| ATP-dependent protease LonB [Clostridium botulinum B1 str. Okra]
 gi|169121652|gb|ACA45488.1| ATP-dependent protease LonB [Clostridium botulinum B1 str. Okra]
          Length = 559

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 55/245 (22%), Positives = 83/245 (33%), Gaps = 57/245 (23%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV-------- 74
           RP + +E  GQ      LK  I      +    HV+  GPPG GKT  A+++        
Sbjct: 62  RPSSFDEIIGQENGIKALKAAI-----CSPNPQHVIIYGPPGTGKTAAARLILEDAKKKE 116

Query: 75  --------------ARELGVNFRSTSGPVIAKAGD----------LAAL-------LTNL 103
                         A  +  + R  + P+I    D          LA +       +T  
Sbjct: 117 YSPFNQQSKFMEIDATTVRSDERGIADPLIGSVHDPIYQGAGALGLAGVPQPKPGAVTKA 176

Query: 104 EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG-EGPSARSV---------KINLSR 153
               +LFIDEI  L       L   +ED ++ L      PS  ++             + 
Sbjct: 177 HGG-ILFIDEIGELHPSEMNKLLKVLEDRKVFLDSAYYNPSDNNIPSYIKDIFENGLPAD 235

Query: 154 FTLIAATTRVG-LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIA 212
           F LI ATTR    +T  L+ R            E++K I     +     + +EA   I+
Sbjct: 236 FRLIGATTRSPEEITPALRSRCVEVFFRALL-PEEIKKIAMNAIEKLNFTIEEEACELIS 294

Query: 213 MRSRG 217
                
Sbjct: 295 KYCSN 299


>gi|6677723|ref|NP_031396.1| replication factor C subunit 5 isoform 1 [Homo sapiens]
 gi|728777|sp|P40937|RFC5_HUMAN RecName: Full=Replication factor C subunit 5; AltName:
           Full=Activator 1 36 kDa subunit; Short=A1 36 kDa
           subunit; AltName: Full=Activator 1 subunit 5; AltName:
           Full=Replication factor C 36 kDa subunit; Short=RF-C 36
           kDa subunit; Short=RFC36
 gi|1498257|gb|AAB09784.1| replication factor C, 36-kDa subunit [Homo sapiens]
 gi|12804841|gb|AAH01866.1| Replication factor C (activator 1) 5, 36.5kDa [Homo sapiens]
 gi|15530326|gb|AAH13961.1| Replication factor C (activator 1) 5, 36.5kDa [Homo sapiens]
 gi|29124997|gb|AAO63493.1| replication factor C (activator 1) 5, 36.5kDa [Homo sapiens]
 gi|312151544|gb|ADQ32284.1| replication factor C (activator 1) 5, 36.5kDa [synthetic construct]
          Length = 340

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 74/225 (32%), Gaps = 38/225 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA- 75
             +   RP+TL +     +  S ++ FI       + L H+L  GPPG GKT+     A 
Sbjct: 21  PWVEKYRPQTLNDLISHQDILSTIQKFI-----NEDRLPHLLLYGPPGTGKTSTILACAK 75

Query: 76  -----RELGVNFRSTSGPVIAKAGDLAA-LLTNLEDRDVL-------FIDEIHRLSIIVE 122
                +E G      +         +   +L+    R +         +DE   ++   +
Sbjct: 76  QLYKDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQ 135

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             L   +E F       E      +   LS+                LQ R     R   
Sbjct: 136 NALRRVIEKF------TENTRFCLICNYLSKIIP------------ALQSRC-TRFRFGP 176

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
              E +   ++   +   + ++++    +   S G  R A  +L+
Sbjct: 177 LTPELMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNILQ 221


>gi|288554626|ref|YP_003426561.1| DNA polymerase III subunits gamma and tau [Bacillus pseudofirmus
           OF4]
 gi|288545786|gb|ADC49669.1| DNA polymerase III gamma and tau subunits [Bacillus pseudofirmus
           OF4]
          Length = 561

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 51/231 (22%), Positives = 86/231 (37%), Gaps = 31/231 (13%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+ L +  GQ      L    + A  + +     LF GP G GKT+ A+++A+ +    
Sbjct: 11  RPQQLRDVVGQEHITKTL----QNALLQNKFSHAYLFSGPRGTGKTSAAKIIAKAINCEK 66

Query: 83  RSTSGPVIAKAGDLAAL--LTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLD 135
                PV     + AA   +T+    DV+ ID      +  +  I +++ +   E     
Sbjct: 67  ----APVAEPCNECAACKGITSGAIVDVMEIDAASNNGVDEIRDIRDKVKFAPNEVPYKV 122

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             ++++        I ATT    +   +  R             
Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPGHVIFILATTEPHKIPLTIISRCQRFDFKRIPN-- 180

Query: 187 DLKTIVQRGAKLT---GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
               IV R  ++    G+ V DEA   IA  + G  R A  LL +   +AE
Sbjct: 181 --TAIVGRMNEILLHDGIEVDDEALNMIARAADGGMRDALSLLDQAISYAE 229


>gi|238919040|ref|YP_002932554.1| DNA polymerase III subunit tau, [Edwardsiella ictaluri 93-146]
 gi|238868608|gb|ACR68319.1| DNA polymerase III subunit tau, putative [Edwardsiella ictaluri
           93-146]
          Length = 652

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 61/323 (18%), Positives = 106/323 (32%), Gaps = 37/323 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D+L ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDNCREIEQGRFVDLLEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++        + ATT    L   +  R  +   L   + E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSRC-LQFHLRALDHEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  +++ A    L     A   +A  + G+ R A  L+    D A       IT +    
Sbjct: 184 RAQLEKIAHAEALTAEPRALQLLARAAEGSMRDALSLM----DQAIAMGQGQITADTVSQ 239

Query: 249 ALLRLAIDK-----MGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI--- 300
            L  L  ++           D   +        G  V  E +   L E    +  +    
Sbjct: 240 MLGTLDDEQPLALIEALTAADGALVMARVEQAAGRGVDWENL---LVEMLALLHRVAMLQ 296

Query: 301 -EPYMIQQGFIQRTPRGRLLMPI 322
             P  +   F    PR R L  +
Sbjct: 297 LLPSALDSQFAAVEPRLRELARM 319


>gi|312126881|ref|YP_003991755.1| DNA polymerase III subunits gamma and tau [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311776900|gb|ADQ06386.1| DNA polymerase III, subunits gamma and tau [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 534

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 90/236 (38%), Gaps = 25/236 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP+  E+   Q      LK  I+  K         +F GP G GKTT A++++R
Sbjct: 4   ALYRKYRPKVFEDVVAQDHITKTLKNQIKQDKVAHAY----IFCGPRGTGKTTTAKIMSR 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHRLSII-----VEEILYPAM 129
            +         P      +     + L+++   VL ID     S+       +E+ YP  
Sbjct: 60  AVNCLNPKDGNP----CNECEVCRSILDEKTLDVLEIDAASNTSVNDVRQIRDEVRYPPS 115

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
              +   ++ E             ++++   S    I ATT +  +   +  R       
Sbjct: 116 VCKKKVYIIDEVHMLSTGAFNALLKTLEEPPSHALFILATTDIQKVPATILSRCQ-RFDF 174

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
               ++D+   +++  ++  +++ D A   I+ ++ G  R A  +L R  + ++  
Sbjct: 175 KRISVKDIYERLKKIVQMENISIDDNALYLISQKAEGALRDALTILERCINTSDEH 230


>gi|167629255|ref|YP_001679754.1| DNA polymerase iii gamma/tau subunit [Heliobacterium modesticaldum
           Ice1]
 gi|167591995|gb|ABZ83743.1| DNA polymerase iii gamma/tau subunit [Heliobacterium modesticaldum
           Ice1]
          Length = 606

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 86/225 (38%), Gaps = 21/225 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP++ +E  GQ      L    + A A        LF GP G GKTT A+++A+ L  + 
Sbjct: 11  RPQSFQELVGQEHVSRTL----QNAIAYQRIAHAYLFCGPRGTGKTTTAKILAKALNCSG 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P      +  A+ T     DVL ID      +  +  + E++ Y   E      +
Sbjct: 67  HGPVRP-CNDCLNCRAINTGAS-HDVLEIDAASNRGVDEIRELREQVKYAPQEGNYKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++   +    + ATT V  +   +  R           + ++
Sbjct: 125 IDEVHMLTTEAFNALLKTLEEPPANVIFVLATTEVHKIPATILSRCQ-RFDFRRLGVNEI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
              ++R  +   +A + E    IA ++ G  R A  +L +   +A
Sbjct: 184 VDRLERICRHHEIAASRETLSFIARKAEGGMRDALGILDQCVSYA 228


>gi|158254806|dbj|BAF83374.1| unnamed protein product [Homo sapiens]
          Length = 340

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 74/225 (32%), Gaps = 38/225 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA- 75
             +   RP+TL +     +  S ++ FI       + L H+L  GPPG GKT+     A 
Sbjct: 21  PWVEKYRPQTLNDLISHQDILSTIQKFI-----NEDRLPHLLLYGPPGTGKTSTILACAK 75

Query: 76  -----RELGVNFRSTSGPVIAKAGDLAA-LLTNLEDRDVL-------FIDEIHRLSIIVE 122
                +E G      +         +   +L+    R +         +DE   ++   +
Sbjct: 76  QLYKDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQ 135

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             L   +E F       E      +   LS+                LQ R     R   
Sbjct: 136 NALRRVIEKF------TENTRFCLICNYLSKIIP------------ALQSRC-TRFRFGP 176

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
              E +   ++   +   + ++++    +   S G  R A  +L+
Sbjct: 177 LTPELMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNILQ 221


>gi|219685248|ref|ZP_03540068.1| DNA polymerase III, subunits gamma and tau [Borrelia garinii Far04]
 gi|219673344|gb|EED30363.1| DNA polymerase III, subunits gamma and tau [Borrelia garinii Far04]
          Length = 560

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 54/226 (23%), Positives = 84/226 (37%), Gaps = 25/226 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPR      GQ      LK  IE  K         +F GP G+GKT+ A+  AR L    
Sbjct: 12  RPRDFNSLEGQDFVVETLKHSIEKNKIANAY----IFSGPRGVGKTSSARAFARCLNCK- 66

Query: 83  RSTSGPVIAKAGDLA--ALLTNLEDRDVLFIDEIHRLSII-----VEEILYPAMEDFQLD 135
              +GP +   G+      + N    DV+ ID     S+       EEI++P        
Sbjct: 67  ---NGPTVMPCGECNNCKSIDNDSSLDVIEIDGASNTSVQDIRQIKEEIMFPPAVSKYRI 123

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             ++++        I ATT    L   ++ R           +E
Sbjct: 124 YIIDEVHMLSNSAFNALLKTIEEPPHYIVFIFATTESHKLPETIKSRCQ-HFSFKLLSLE 182

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
            +  ++++      +   DEA   IA +S G+ R A  L  +V  F
Sbjct: 183 KIYNMLKKVCFEDHIKYEDEALKWIAYKSSGSVRDAYTLFDQVVSF 228


>gi|167754078|ref|ZP_02426205.1| hypothetical protein ALIPUT_02366 [Alistipes putredinis DSM 17216]
 gi|167658703|gb|EDS02833.1| hypothetical protein ALIPUT_02366 [Alistipes putredinis DSM 17216]
          Length = 639

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 57/270 (21%), Positives = 86/270 (31%), Gaps = 57/270 (21%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T     GQ    S LK  IE    R +     LF GP G+GKTT A++ A+ +
Sbjct: 8   ARKYRPATFSSVVGQKHITSTLKNAIE----RGQLAHAYLFCGPRGVGKTTCARIFAKAI 63

Query: 79  GV------------------------NFRSTSGPVIAKAGDLAALLT------NLEDRDV 108
                                     N             D+ +L+        +    V
Sbjct: 64  NCLHPEGAEACNACESCRSFNDGRSLNIHELDAASNNSVEDIRSLIEQVRIIPQVGRYSV 123

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
             IDE+H LS          +E+          P A ++ I         ATT    +  
Sbjct: 124 FIIDEVHMLSAAAFNAFLKTLEE----------PPAHAIFIL--------ATTEKHKIIP 165

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            +  R  I    N   +ED    ++  A   G+   DE+   IA ++ G  R A  +  +
Sbjct: 166 TILSRCQI-YDFNRIRVEDSVEYLKYIASQEGITADDESLNLIAQKADGGMRDALSMFDK 224

Query: 229 VRDFAEVAHAKTITREIADAALLRLAIDKM 258
              F      + +  +     L  L  D  
Sbjct: 225 AVSFC----GQELRYQEVAQTLNVLDYDTY 250


>gi|319777692|ref|YP_004137343.1| DNA polymerase iii subunits gamma and tau [Mycoplasma fermentans
           M64]
 gi|318038767|gb|ADV34966.1| DNA polymerase III subunits gamma and tau [Mycoplasma fermentans
           M64]
          Length = 604

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 47/262 (17%), Positives = 78/262 (29%), Gaps = 56/262 (21%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     RP++ ++  GQ      LK  I         + H  LF GP G+GKT++A++ A
Sbjct: 5   ALYRKYRPKSFDDVKGQDHIVQTLKNII-----LNHKISHAYLFSGPRGVGKTSVAKIFA 59

Query: 76  R---------------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD------V 108
                                 +   +             ++  L   ++         V
Sbjct: 60  NVVNCGHGEDLTKLCESCIEKADQNFDVIEMDAASNNGVNEIRDLRDKIQHSPASGNYKV 119

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
             IDE+H LS      L   +E+          P A ++ I         ATT    +  
Sbjct: 120 YIIDEVHMLSKGAFNALLKTLEE----------PPAHAIFIL--------ATTDPQKIPL 161

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            +  R            + L   ++       +   D     IA  + G  R A  +   
Sbjct: 162 TILSRVQ-RYNFRKISNQVLINQIKEVLDKEKIKYEDSTIAYIARLATGGMRDALSI--- 217

Query: 229 VRDFAEVAHAKTITREIADAAL 250
             D A       I+ +    A 
Sbjct: 218 -VDQAAAYGNDKISLKDVMYAF 238


>gi|258509261|ref|YP_003172012.1| DNA polymerase III gamma and tau subunits [Lactobacillus rhamnosus
           GG]
 gi|257149188|emb|CAR88161.1| DNA polymerase III gamma and tau subunits [Lactobacillus rhamnosus
           GG]
 gi|259650543|dbj|BAI42705.1| DNA polymerase III gamma and tau subunits [Lactobacillus rhamnosus
           GG]
          Length = 565

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 58/295 (19%), Positives = 103/295 (34%), Gaps = 32/295 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  ++  GQ      LK     A    +     LF GP G GKT++A+++A+ L    
Sbjct: 11  RPQQFKDVIGQDAITKTLK----NALITGQTSHAYLFTGPRGTGKTSVAKILAKALNCLH 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P      ++   + +    DV+ ID      +  +  I ++  Y          +
Sbjct: 67  LEDGEP--DNICEICQAINDGSLTDVIEIDAASNNGVDEIRDIRDKAKYAPTRARVKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++   +    I ATT    +   +  R            ED+
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPAHVVFILATTEPHKIPATIISRTQ-RFDFRRITPEDI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              ++       +   D A   IA  + G  R A  +L +V  F        +T E A  
Sbjct: 184 VKRMRFILDDKQITYDDAALKVIAKAAEGGMRDALSILDQVLSF----GDNHVTTEDALD 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTM-IARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
               +    +G      +YL   +A++       +E + A   +    IEDLIE 
Sbjct: 240 VTGGVTTAVLG------KYLAAVLAKDHAQALKMVEDLLAAGKDAGRLIEDLIEY 288


>gi|323958663|gb|EGB54366.1| DNA polymerase III [Escherichia coli H263]
          Length = 299

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 53/306 (17%), Positives = 107/306 (34%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++        + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +A    A   +A  + G+ R A  L     D A  +    ++ +   A
Sbjct: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAIASGDGQVSTQAVSA 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L  D+       L  +  +    G   + +   +A      +A+   +   + +  
Sbjct: 240 MLGTLDDDQA------LSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIA 293

Query: 309 FIQRTP 314
            +Q +P
Sbjct: 294 MVQLSP 299


>gi|126324700|ref|XP_001375103.1| PREDICTED: similar to Replication factor C subunit 5 (Replication
           factor C 36 kDa subunit) (RF-C 36 kDa subunit) (RFC36)
           (Activator 1 36 kDa subunit) (A1 36 kDa subunit)
           [Monodelphis domestica]
          Length = 342

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 73/225 (32%), Gaps = 38/225 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+TL+E     +  S ++ FI       + L H+L  GPPG GKT+     AR
Sbjct: 23  PWVEKYRPQTLDELISHQDILSTIQKFIS-----EDRLPHLLLYGPPGTGKTSTILACAR 77

Query: 77  ------ELGVNFRSTSGPVIAKAGDLAA-LLTNLEDRDVL-------FIDEIHRLSIIVE 122
                 E        +         +   +L+    R +         +DE   ++   +
Sbjct: 78  QLYKDKEFNSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQ 137

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             L   +E F       E      +   LS+                LQ R     R   
Sbjct: 138 NALRRVIEKF------TENTRFCLICNYLSKIIP------------ALQSRC-TRFRFGP 178

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
              E +   ++       + V+++    +   S G  R A  +L+
Sbjct: 179 LTPELMVPRLEHVIAEEKVDVSEDGMKALVTLSSGDMRRALNILQ 223


>gi|183985209|ref|YP_001853500.1| DNA polymerase III (subunit gamma/tau) DnaZX [Mycobacterium marinum
           M]
 gi|183178535|gb|ACC43645.1| DNA polymerase III (subunit gamma/tau) DnaZX [Mycobacterium marinum
           M]
          Length = 633

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 49/256 (19%), Positives = 85/256 (33%), Gaps = 21/256 (8%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T  E  GQ      L + +EA +         LF GP G GKT+ A+++AR
Sbjct: 2   ALYRKYRPATFAEVVGQEHVTEPLSIALEAGRINHAY----LFSGPRGCGKTSSARILAR 57

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-DVLFIDEIHRLSIIVEEILY------PAM 129
            L    +  +           AL  +     DV+ +D      +     L       PA 
Sbjct: 58  SLNC-AQGPTATPCGTCESCQALAPSAPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQ 116

Query: 130 EDFQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
             +++ ++         G     + V+        I ATT    +   ++ R        
Sbjct: 117 SRYRVFIIDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSR-THHYPFR 175

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
                 ++ ++ R  +  G+ V +     +     G+PR    +L ++   A+  H    
Sbjct: 176 LLPPRTMRGLIGRICEQEGVVVDEAVYPLVTRAGGGSPRDTLSVLDQLVAGAQSNHVTYQ 235

Query: 242 TREIADAALLRLAIDK 257
                  A     ID 
Sbjct: 236 RALGLLGATDVALIDD 251


>gi|297572178|ref|YP_003697952.1| DNA polymerase III subunits gamma/tau [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296932525|gb|ADH93333.1| DNA polymerase III, subunits gamma and tau [Arcanobacterium
           haemolyticum DSM 20595]
          Length = 848

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 80/226 (35%), Gaps = 23/226 (10%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
              RP++ +E  GQ    + LK    AA A        LF GP G GKTT A+++AR L 
Sbjct: 10  RRYRPQSFQEVIGQDHVVAPLK----AALAAGRTTHAYLFSGPRGCGKTTSARILARCLN 65

Query: 80  VNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFIDEIHRLSII------VEEILYPAMED 131
                T  P  V     DLA         DV+ +D      +        +    P  + 
Sbjct: 66  CANYPTDTPCGVCESCRDLA--RDGAGSLDVVELDAASHGGVDDARDLREQAGFAPVRDR 123

Query: 132 FQLDLMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           F++ ++         G     + V+        I ATT    +   ++ R          
Sbjct: 124 FKIFIIDEAHMVSNQGFNALLKLVEEPPEHVKFIFATTEPEKVIGTIRSR-THHYPFRLV 182

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
              DL+  + R     G++ + +    +     G+ R    +L ++
Sbjct: 183 PPLDLEKYLARLCAQEGVSASKDVLSLVIRAGTGSVRDTLSVLDQI 228


>gi|219684238|ref|ZP_03539182.1| DNA polymerase III, subunits gamma and tau [Borrelia garinii PBr]
 gi|219672227|gb|EED29280.1| DNA polymerase III, subunits gamma and tau [Borrelia garinii PBr]
          Length = 560

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 54/226 (23%), Positives = 84/226 (37%), Gaps = 25/226 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPR      GQ      LK  IE  K         +F GP G+GKT+ A+  AR L    
Sbjct: 12  RPRDFNSLEGQDFVVETLKHSIEKNKIANAY----IFSGPRGVGKTSSARAFARCLNCK- 66

Query: 83  RSTSGPVIAKAGDLA--ALLTNLEDRDVLFIDEIHRLSII-----VEEILYPAMEDFQLD 135
              +GP +   G+      + N    DV+ ID     S+       EEI++P        
Sbjct: 67  ---NGPTVMPCGECNNCKSIDNDSSLDVIEIDGASNTSVQDIRQIKEEIMFPPAVSKYRI 123

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             ++++        I ATT    L   ++ R           +E
Sbjct: 124 YIIDEVHMLSNSAFNALLKTIEEPPHYIVFIFATTESHKLPETIKSRCQ-HFSFKLLSLE 182

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
            +  ++++      +   DEA   IA +S G+ R A  L  +V  F
Sbjct: 183 KIYNMLKKVCFEDHIKYEDEALKWIAYKSSGSVRDAYTLFDQVVSF 228


>gi|50424927|ref|XP_461055.1| DEHA2F16016p [Debaryomyces hansenii CBS767]
 gi|49656724|emb|CAG89431.1| DEHA2F16016p [Debaryomyces hansenii]
          Length = 368

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/256 (15%), Positives = 79/256 (30%), Gaps = 35/256 (13%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M ++E L           +   RP+ L++   Q  A   LK  +E+A      L H+LF 
Sbjct: 14  MYEQERLHHT------PWVEKYRPKNLDDVASQDHAVKILKKTLESA-----NLPHMLFY 62

Query: 61  GPPGLGKTTLAQVVARE------LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEI 114
           GPPG GKT+    +A++              +         +   + N     +      
Sbjct: 63  GPPGTGKTSTILALAKQLYGPHLYKSRVLELNASDERGISIVRQKIKNFARLTIS----- 117

Query: 115 HRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSR--------FTLIAATTRVGLL 166
              +   E++       +++ ++          +  L R                 +  +
Sbjct: 118 ---NPSKEDLENYPCPPYKIIILDEADSMTNDAQSALRRTMENYSGVTRFCLICNYITRI 174

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVT-DEAACEIAMRSRGTPRIAGRL 225
            +PL  R     R       +    ++       +A+  ++   E+   S G  R A   
Sbjct: 175 IDPLASRCS-KFRFRLLNNSNALNRLKYIVGQEEIALDNEDVLEEVLNISNGDLRKAITY 233

Query: 226 LRRVRDFAEVAHAKTI 241
           L+         + +  
Sbjct: 234 LQSAARLHASFNNRID 249


>gi|284049060|ref|YP_003399399.1| DNA polymerase III, subunits gamma and tau [Acidaminococcus
           fermentans DSM 20731]
 gi|283953281|gb|ADB48084.1| DNA polymerase III, subunits gamma and tau [Acidaminococcus
           fermentans DSM 20731]
          Length = 671

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 55/296 (18%), Positives = 110/296 (37%), Gaps = 33/296 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  ++  GQ    + +K  +  A          LF GP G GKT+ A+++A+ L    
Sbjct: 11  RPQDFDDLVGQ----APIKKALTNALETGRISHAYLFAGPRGTGKTSTARILAKALNCEK 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
             T+ P   +  +   + T     DV+ ID      I  +  + E++ +          +
Sbjct: 67  GPTAHP-CNQCSNCREI-TEGTCGDVVEIDAASNRGIDEIRKLREQVYFAPTSCRYKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT    + N +  R           ++++
Sbjct: 125 IDEVHMITTDAFNALLKTLEEPPEHVVFILATTEPQKILNTILSRCQ-RFDFRRATVDEI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              +++ AK + +    EA   +A+++ G  R A  LL +    A       +T E    
Sbjct: 184 AEHLEKVAKGSHIQAEPEALRLMAIQADGGLRDALSLLDQCSVMA-----SPVTAETVRQ 238

Query: 249 ALLRLAIDKMGFDQLDLRYLTMI-ARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
            L  +  +K+         +T I  +N  G    +  +     E    + +L+E +
Sbjct: 239 VLGLVGREKL------RELVTRIGQKNLSGALDALGQLLEQGKEMEQILAELLEYF 288


>gi|167772016|ref|ZP_02444069.1| hypothetical protein ANACOL_03390 [Anaerotruncus colihominis DSM
           17241]
 gi|167665814|gb|EDS09944.1| hypothetical protein ANACOL_03390 [Anaerotruncus colihominis DSM
           17241]
          Length = 536

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 88/227 (38%), Gaps = 27/227 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T ++  GQ    + LK  + A K       H  LF G  G GKTT +++VA+ +   
Sbjct: 10  RPKTFDDVVGQEHITATLKNEVAAGK-----FSHAYLFTGSRGTGKTTCSKIVAKAVNCE 64

Query: 82  FRSTSGPVIAKAGDLAAL--LTNLEDRDVLFID-----EIHRLSIIVEE-ILYPAMEDFQ 133
                 P      + AA   + +    DV+ ID      +  +  + EE    P++  ++
Sbjct: 65  RPVDGNP----CNECAACRGIDDGSVLDVVEIDAASNNGVDNIRQLREEAYFLPSVVKYR 120

Query: 134 LDL-----MVGEGPSARSVKINLSR---FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           + +     M+ +G     +KI          I ATT +  +   +  R       +    
Sbjct: 121 VYILDECHMLSQGAVNALLKILEEPPEHVVFILATTEIHKVLPTILSRCQ-RFDFHRIRS 179

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
             +   +   A+    ++ D+AA  IA  S G  R A  LL     F
Sbjct: 180 RVIADRLLYIAEQESFSLADDAALLIARLSDGGMRDALSLLDLCASF 226


>gi|62087564|dbj|BAD92229.1| replication factor C 5 isoform 1 variant [Homo sapiens]
          Length = 351

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 74/225 (32%), Gaps = 38/225 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA- 75
             +   RP+TL +     +  S ++ FI       + L H+L  GPPG GKT+     A 
Sbjct: 35  PWVEKYRPQTLNDLISHQDILSTIQKFI-----NEDRLPHLLLYGPPGTGKTSTILACAK 89

Query: 76  -----RELGVNFRSTSGPVIAKAGDLAA-LLTNLEDRDVL-------FIDEIHRLSIIVE 122
                +E G      +         +   +L+    R +         +DE   ++   +
Sbjct: 90  QLYKDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQ 149

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             L   +E F       E      +   LS+                LQ R     R   
Sbjct: 150 NALRRVIEKF------TENTRFCLICNYLSKIIP------------ALQSRC-TRFRFGP 190

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
              E +   ++   +   + ++++    +   S G  R A  +L+
Sbjct: 191 LTPELMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNILQ 235


>gi|297620228|ref|YP_003708333.1| AAA ATPase central domain-containing protein [Methanococcus voltae
           A3]
 gi|297379205|gb|ADI37360.1| AAA ATPase central domain protein [Methanococcus voltae A3]
          Length = 510

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 46/250 (18%), Positives = 85/250 (34%), Gaps = 19/250 (7%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
            +   RP+++ +  GQ +    L  +IE           +L  GPPG GKTTLA  +A +
Sbjct: 3   WVEKYRPKSMNDVAGQNKTKEQLITWIEEYIQNGGYHKPLLLAGPPGCGKTTLAYALAND 62

Query: 78  LGVNFRSTSGP------VIAKAGDLAALLTNL-EDRDVLFIDEIHRLSIIVE----EILY 126
                   +        VI +    AA+  +L   R ++ +DE+  LS   +      + 
Sbjct: 63  YNFEVIELNASDKRNKNVIQQVVGTAAVSKSLSGRRSLIILDEVDGLSGNDDRGGVSEII 122

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
              +  +  +++      +     L     +   + V   + P   R          + +
Sbjct: 123 KVAKTAKNPIILTANDPYKLNLSTLRNSVHLVNVSSVHTNSIPPVLRKIALQEGYEVDPK 182

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
            +K I    +     A+ D       + S    R +      VR+ A+      I  +  
Sbjct: 183 AIKMIASHASGDLRAAIND-------LESLLIGRTSPMETEDVRNLADRDSKGNIF-DAV 234

Query: 247 DAALLRLAID 256
             AL     D
Sbjct: 235 RIALKTTHYD 244


>gi|94987358|ref|YP_595291.1| DNA polymerase III, gamma/tau subunits [Lawsonia intracellularis
           PHE/MN1-00]
 gi|94731607|emb|CAJ54970.1| DNA polymerase III, gamma/tau subunits [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 574

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 80/220 (36%), Gaps = 21/220 (9%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
             RP++ +E  GQ       K+   AA A ++ +   L  G  G+GKTT+A++ A+ L  
Sbjct: 9   RYRPQSFKEVVGQEIVK---KILSRAA-AESKVVPAYLLSGTRGVGKTTIARIFAKALNC 64

Query: 81  NFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHR-----LSIIVEEILYPAMEDFQLD 135
             ++ +            +   +   DV+ ID            + E I Y  ME     
Sbjct: 65  Q-QAPTAEPCNTCEQCKRITKGIHV-DVVEIDGASNRGVDDARRLRESIAYAPMEGRYKV 122

Query: 136 LMVGEGPSA--RSVKINL------SRF-TLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E       S    L        F T + ATT        +  R    +     + E
Sbjct: 123 FIIDEAHMLTRESFNALLKTLEEPPPFSTFVFATTEPHKFPVTIISRCQHFVLKPLTKEE 182

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
            +  ++    K   +   D A   IA R+ G+ R +  LL
Sbjct: 183 LIYNLIH-VLKQENICYEDNAIQLIARRASGSIRDSMSLL 221


>gi|300172666|ref|YP_003771831.1| DNA polymerase III subunit gamma/tau [Leuconostoc gasicomitatum LMG
           18811]
 gi|299887044|emb|CBL91012.1| DNA polymerase III subunit gamma/tau [Leuconostoc gasicomitatum LMG
           18811]
          Length = 585

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 82/233 (35%), Gaps = 40/233 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RPRT ++  GQ      L+  IE  +         LF GP G GKT+ A++ AR
Sbjct: 5   ALYRVYRPRTFDDMVGQEVITQTLRNAIETHQTGHAY----LFSGPRGTGKTSAAKIFAR 60

Query: 77  ELG-----------VNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSI 119
           E+             +         ++  D+  +L+N++      +  V  IDE+H LS 
Sbjct: 61  EINGIDPTTDDSQIPDIVEFDAASNSRVEDMRDILSNVDYAPIEAEFKVYIIDEVHMLSN 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
                L   +E+                    +    I ATT    +   +  R      
Sbjct: 121 SAFNALLKTLEE------------------PPANVKFILATTEPQKVPVTILSRTQRFEF 162

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
                +     +V        +A  D+A   IA  + G  R A  +L +V  F
Sbjct: 163 KRIDSLIIKARLVD-VLNKQQIAYEDDALRIIANVAEGGMRDALSILDQVIAF 214


>gi|13542322|ref|NP_112010.1| replication factor C small subunit [Thermoplasma volcanium GSS1]
 gi|73920753|sp|Q977Z9|RFCS_THEVO RecName: Full=Replication factor C small subunit; Short=RFC small
           subunit; AltName: Full=Clamp loader small subunit
          Length = 318

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 58/238 (24%), Positives = 93/238 (39%), Gaps = 37/238 (15%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +      RP++L E  G+ E    LK F+E      + L H+LF G  G GKT+ A  +A
Sbjct: 3   EIWTEKYRPKSLSEIYGEDENIQKLKSFVE-----KKELPHLLFAGSVGTGKTSTAIALA 57

Query: 76  RE-----LGVNFRSTSGP-------VIAKAGDLAALL-TNLEDRDVLFIDEIHRLSIIVE 122
            E        NF   +         +  K  D+A +  +N     +LF+DE  +L+   +
Sbjct: 58  IELFGESWKENFIEMNASNENGIDVIRNKIKDIARIRPSNPLGFKILFLDEADQLTAEAQ 117

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             L   ME +                   +RF    A      +  P+Q R  + +R   
Sbjct: 118 AALRRTMEMYSET----------------TRFVF--ACNYSSKIIPPIQSR-TVVMRFRP 158

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            + E +K  +   AK  G  + DE+   +   S G  R A  +L+ V    E++  K 
Sbjct: 159 VQDEFIKKKLNEIAKNEGFTIDDESMEAMVEVSGGDMRKAINVLQAVYTSGEISPKKI 216


>gi|296166815|ref|ZP_06849233.1| DNA polymerase III, gamma/tau subunit DnaX [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295897831|gb|EFG77419.1| DNA polymerase III, gamma/tau subunit DnaX [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 625

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 85/233 (36%), Gaps = 21/233 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T  E  GQ      L + +EA +         LF GP G GKT+ A+++AR
Sbjct: 17  ALYRKYRPATFAEVVGQEHVTEPLSIALEAGRINHAY----LFSGPRGCGKTSSARILAR 72

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-DVLFID-----EIHRLSIIVEEILY-PAM 129
            L      T+ P         AL  N     DV+ +D      +     + +   Y PA 
Sbjct: 73  SLNCVQGPTANP-CGVCESCTALAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQ 131

Query: 130 EDFQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
             +++ ++         G     + V+        I ATT    +   ++ R        
Sbjct: 132 SRYRVFIIDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSR-THHYPFR 190

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
               + ++ ++ R  +  G+ V D     +     G+PR    +L ++   +E
Sbjct: 191 LLPPKTMRALIGRICEQEGVVVDDAVFPLVIRAGGGSPRDTLSVLDQLLAGSE 243


>gi|67593020|ref|XP_665689.1| AAA-family ATPase [Cryptosporidium hominis TU502]
 gi|54656488|gb|EAL35459.1| AAA-family ATPase [Cryptosporidium hominis]
          Length = 460

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 80/206 (38%), Gaps = 15/206 (7%)

Query: 26  TLEEFTGQVEACSNLK-------VFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           + ++  G  +A ++LK        F E  + + +    +L  GPPG GKT LA+  A E+
Sbjct: 131 SWDDIIGLEQAKTSLKEAVILPAKFPELFQGKLKPWKGILLYGPPGTGKTFLAKACATEM 190

Query: 79  GVNFRSTSGPVIAKA------GDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAME 130
              F S S   +           + AL     +R   ++FIDEI  L     E    A  
Sbjct: 191 KGTFLSISSADLTSKWQGESEKLIKALFDVARERAPSIIFIDEIDSLCSSRNEQENEATR 250

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
             + + +V       +   N     ++  T     + + ++ RF   I +   + E    
Sbjct: 251 RIKTEFLVQMDGVNSNSNNNFKPILVLGTTNIPWEIDSGIRRRFERRIYIPLPDEESRVL 310

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSR 216
           +++ G K    ++ D+    IA  + 
Sbjct: 311 LIKNGLKSINHSLIDDDINYIAKMTH 336


>gi|157821267|ref|NP_001100616.1| replication factor C subunit 5 [Rattus norvegicus]
 gi|149063502|gb|EDM13825.1| replication factor C (activator 1) 5 (predicted) [Rattus
           norvegicus]
 gi|197245812|gb|AAI68902.1| Replication factor C (activator 1) 5 [Rattus norvegicus]
          Length = 338

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 74/225 (32%), Gaps = 38/225 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA- 75
             +   RP+TL +     +  S ++ FI       + L H+L  GPPG GKT+     A 
Sbjct: 19  PWVEKYRPQTLADLISHQDILSTIQKFIS-----EDRLPHLLLYGPPGTGKTSTILACAK 73

Query: 76  -----RELGVNFRSTSGPVIAKAGDLAA-LLTNLEDRDVL-------FIDEIHRLSIIVE 122
                +E G      +         +   +L+    R +         +DE   ++   +
Sbjct: 74  QLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKRGFKLVILDEADAMTQDAQ 133

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             L   +E F       E      +   LS+                LQ R     R   
Sbjct: 134 NALRRVIEKF------TENTRFCLICNYLSKIIP------------ALQSRC-TRFRFGP 174

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
              E +   ++   +   + ++++    +   S G  R A  +L+
Sbjct: 175 LTPELMVPRLEHVVQEENVDISEDGMKALVTLSSGDMRRALNILQ 219


>gi|73995285|ref|XP_534696.2| PREDICTED: similar to replication factor C 5 isoform 1 [Canis
           familiaris]
          Length = 410

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 73/225 (32%), Gaps = 38/225 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA- 75
             +   RP+TL +     +  S ++ FI       + L H+L  GPPG GKT+     A 
Sbjct: 91  PWVEKYRPQTLNDLISHQDILSTIQKFIS-----EDRLPHLLLYGPPGTGKTSTILACAK 145

Query: 76  -----RELGVNFRSTSGPVIAKAGDLAA-LLTNLEDRDVL-------FIDEIHRLSIIVE 122
                +E G      +         +   +L+    R +         +DE   ++   +
Sbjct: 146 QLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQ 205

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             L   +E F       E      +   LS+                LQ R     R   
Sbjct: 206 NALRRVIEKF------TENTRFCLICNYLSKIIP------------ALQSRC-TRFRFGP 246

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
              E +   ++       + ++++    +   S G  R A  +L+
Sbjct: 247 LTPELMVPRLEHVVGEEKVDLSEDGMKALVTLSSGDMRRALNILQ 291


>gi|319789969|ref|YP_004151602.1| DNA polymerase III, subunits gamma and tau [Thermovibrio
           ammonificans HB-1]
 gi|317114471|gb|ADU96961.1| DNA polymerase III, subunits gamma and tau [Thermovibrio
           ammonificans HB-1]
          Length = 460

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 50/261 (19%), Positives = 81/261 (31%), Gaps = 57/261 (21%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
              RP+  ++  GQ      LK  I++ +         +F GP G+GKTT A++VA+ L 
Sbjct: 8   RKYRPQRFDQVVGQDFITKTLKNAIKSGRFAHAY----IFAGPRGVGKTTTARIVAKALN 63

Query: 80  VNFRST------------------------SGPVIAKAGDLAALLTNL------EDRDVL 109
               +                                   +  L  ++        R V 
Sbjct: 64  CENPTDGEPCNSCPQCLEISKGAHPDVIEVDAATNRGIDQIRELRESVHYAPARGKRKVY 123

Query: 110 FIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
            IDE H L+      L   +E+                         I ATT +  +   
Sbjct: 124 IIDEFHMLTKEAFNALLKTLEE------------------PPEHAVFILATTEIDKIPPT 165

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           +  R    +       E +   ++R  +  G+    EA   IA+ S G  R A  LL   
Sbjct: 166 ILSRCQKFLFRKV-PRELIVETLERICRSEGVEFDREALELIAVASEGCIRDAESLL--- 221

Query: 230 RDFAEVAHAKTITREIADAAL 250
            D A       +  ++    L
Sbjct: 222 -DQAIALGGGRVDSKVVSEFL 241


>gi|325956089|ref|YP_004286699.1| DNA polymerase III subunits gamma and tau [Lactobacillus
           acidophilus 30SC]
 gi|325332654|gb|ADZ06562.1| DNA polymerase III subunits gamma and tau [Lactobacillus
           acidophilus 30SC]
          Length = 602

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 82/224 (36%), Gaps = 21/224 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPRT +   GQ      LK  I     R +     LF GP G GKT+ A++ A+ L    
Sbjct: 11  RPRTFDSVIGQEAITDTLKNAI----IRGKVSHAFLFAGPRGTGKTSCAKIFAKALNCTN 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P    A  +AA   ++   D++ ID      +  +  I +++ Y   E      +
Sbjct: 67  LQDGEPCNKCANCIAADQGSMP--DIMEIDAASNNGVDEIREIRDKVKYAPTEGKYKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT +  +   +  R             DL
Sbjct: 125 IDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRI-SKADL 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           +  ++       +   D+A   IA  + G  R A  +L ++  +
Sbjct: 184 EKRMKYILDQENIKYEDKAIAVIAQVADGGMRDALSILDQLLSY 227


>gi|28209884|ref|NP_780828.1| ATP-dependent protease LA [Clostridium tetani E88]
 gi|28202319|gb|AAO34765.1| ATP-dependent protease LA [Clostridium tetani E88]
          Length = 628

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 63/282 (22%), Positives = 96/282 (34%), Gaps = 57/282 (20%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           SLLRP    E  GQ  A  +L      +K  +    H++  GPPG+GKTT A++   E  
Sbjct: 160 SLLRPEEFPEIVGQEIAIKSL-----LSKVASPYPQHIILYGPPGVGKTTAARLALEEGK 214

Query: 80  ----------------------VNFRSTSGPVIAKA---------GDLAAL--------- 99
                                  + R  + P++             DLA +         
Sbjct: 215 RLNNTPFEEDAKFIEVDGTTLRWDPREITNPLLGSVHDPIYQGSKRDLAEVGIPEPKPGL 274

Query: 100 LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL----------DLMVGEGPSARSVKI 149
           +T      VLFIDEI  L  I++  L   +ED ++          D  + +       K 
Sbjct: 275 VTEAHGG-VLFIDEIGELDYILQNKLLKVLEDKRVEFSSSYYDPDDENIPKYIKYLFDKG 333

Query: 150 NLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAAC 209
             + F LI ATTR     NP        +        D++ IV   A+   + + +    
Sbjct: 334 APADFILIGATTREPSEINPALRSRCTEVYFQPLTPNDIEKIVLNAAEKINVELGE-GVS 392

Query: 210 EIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           E   R     R A  +L  V  +        IT +     + 
Sbjct: 393 EAISRYTIEGRKAINILADVYGYVLYNKGILITEDKVKIGMD 434


>gi|89895942|ref|YP_519429.1| hypothetical protein DSY3196 [Desulfitobacterium hafniense Y51]
 gi|219670375|ref|YP_002460810.1| Sigma 54 interacting domain protein [Desulfitobacterium hafniense
           DCB-2]
 gi|89335390|dbj|BAE84985.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219540635|gb|ACL22374.1| Sigma 54 interacting domain protein [Desulfitobacterium hafniense
           DCB-2]
          Length = 579

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 55/281 (19%), Positives = 86/281 (30%), Gaps = 56/281 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                 RP   EE  GQ+E    L+     A        HVL  GPPG+GKT  A++V  
Sbjct: 59  PLAEKTRPTHFEEIVGQLEGIKALR-----AALCGPNPQHVLIYGPPGVGKTAAARLVLE 113

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDV---------------------------- 108
           E   N  S      AK  ++       ++R +                            
Sbjct: 114 EARKNPMSPF-KEDAKFIEIDGATARFDERGIADPLIGSVHDPIYQGAGAMGMAGIPQPK 172

Query: 109 -----------LFIDEIHRLSIIVEEILYPAMEDFQLDL----MVGEGPSARSVKINL-- 151
                      LFIDEI  L  I    L   +ED ++ L       E  +      ++  
Sbjct: 173 AGAVTKAHGGVLFIDEIGELHPIQINKLLKVLEDRKVILESAYYSSEDTNIPVHIHDIFQ 232

Query: 152 ----SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEA 207
               + F ++ ATTR      P      + +       E++  I +  A      +T  A
Sbjct: 233 NGLPADFRMVGATTRSPEEIPPAIRSRCMEVFFRSLLPEEIAQIARGAAAKMETPITPSA 292

Query: 208 ACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
                  +    R A  +++     A+      I     + 
Sbjct: 293 LNVAKQYATN-GREAVNIVQLAAGVAQTEKKLEINAATVEW 332


>gi|323965156|gb|EGB60615.1| DNA polymerase III [Escherichia coli M863]
 gi|327254797|gb|EGE66413.1| DNA polymerase III, subunits gamma and tau [Escherichia coli
           STEC_7v]
          Length = 643

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 53/306 (17%), Positives = 107/306 (34%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++        + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +A    A   +A  + G+ R A  L     D A  +    ++ +   A
Sbjct: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAIASGDGQVSTQAVSA 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L  D+       L  +  +    G   + +   +A      +A+   +   + +  
Sbjct: 240 MLGTLDDDQA------LSLVEAMVEANGERVMSLINEAAARGIEWEALLVEMLGLLHRIA 293

Query: 309 FIQRTP 314
            +Q +P
Sbjct: 294 MVQLSP 299


>gi|323701680|ref|ZP_08113352.1| DNA polymerase III, subunits gamma and tau [Desulfotomaculum
           nigrificans DSM 574]
 gi|323533453|gb|EGB23320.1| DNA polymerase III, subunits gamma and tau [Desulfotomaculum
           nigrificans DSM 574]
          Length = 542

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 53/242 (21%), Positives = 83/242 (34%), Gaps = 53/242 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV-- 80
           RP+  ++  GQ      L    + A          LF GP G GKTT A+V+A+ L    
Sbjct: 11  RPQNFKDIVGQQHITRTL----QNALVNGRVAHAYLFCGPRGTGKTTTAKVLAKALNCLR 66

Query: 81  -------------------------NFRSTSGPVIAKAGDLAALLT---NLEDRDVLFID 112
                                       + S   I +  DL   +    ++  R V  ID
Sbjct: 67  GVDGEPCNECENCRAVNEGSAVDVVEIDAASNRGIDEIRDLREKVKFTPSMGRRKVYIID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H L+      L   +E+          P A  V         + ATT    +   +  
Sbjct: 127 EVHMLTDQAFNALLKTLEE----------PPAHVV--------FVLATTEAHKVPVTILS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R          + E++   ++  A  +G+ V +EA   IA  + G  R A  +L +   F
Sbjct: 169 RCQ-RFDFRRIKPEEMVQRLKEVAAGSGIEVEEEALWLIAKAAEGGLRDALSILDQAAAF 227

Query: 233 AE 234
           A 
Sbjct: 228 AA 229


>gi|117929223|ref|YP_873774.1| DNA polymerase III, subunits gamma and tau [Acidothermus
           cellulolyticus 11B]
 gi|117649686|gb|ABK53788.1| DNA polymerase III, subunits gamma and tau [Acidothermus
           cellulolyticus 11B]
          Length = 637

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 57/263 (21%), Positives = 93/263 (35%), Gaps = 30/263 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     RP T  E  GQ      L+  +     R   + H  LF GP G GKT+ A+++A
Sbjct: 4   ALYRKYRPATFAEVIGQEHVTEPLRQAL-----RHNRVHHAYLFSGPRGCGKTSSARILA 58

Query: 76  RELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILY-P 127
           R L      T  P  V     DLA   +   + DV+ ID      +     + E   Y P
Sbjct: 59  RSLNCEQGPTPDPCGVCQSCRDLAP--SGPGNVDVIEIDAASHGGVDDARDLRERSFYAP 116

Query: 128 AMEDFQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           A+  F++ ++         G     + V+        + ATT    +   ++ R      
Sbjct: 117 AVSRFKVYIIDEAHMVTAAGFNALLKLVEEPPPHLKFVFATTEPDKVLPTIKSR-THHYP 175

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
                   L+  +    +   +A+   A   +     G+ R A  +L ++     +A A 
Sbjct: 176 FRLVPPAVLRQHLAHICEQEKVAIEPGALNLVVRAGAGSVRDALSILDQL-----IAGAG 230

Query: 240 TITREIADAALLRLAIDKMGFDQ 262
           +       AA L    D    D+
Sbjct: 231 SEGVTHRYAAALLGYTDAALLDE 253


>gi|190347750|gb|EDK40085.2| hypothetical protein PGUG_04183 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 347

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 74/231 (32%), Gaps = 28/231 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+ L++   Q  A + LK  + +A      L H+LF GPPG GKT+    +AR
Sbjct: 21  PWVEKYRPKNLDDVASQDHAVNVLKKSLVSA-----NLPHMLFYGPPGTGKTSTVLALAR 75

Query: 77  E------LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           E      +       +         +   + N     V         S    E  YP   
Sbjct: 76  ELYGPDLIKSRVLELNASDERGIAIVRQKVKNFARLTV------SNASPEDLE-KYP-CP 127

Query: 131 DFQLDLMVGEGPSARSVKINLSR--------FTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
            ++L ++          +  L R                 +  + +PL  R     R   
Sbjct: 128 PYKLIILDEADSMTYDAQAALRRTMETYSGVTRFCLICNYITRIIDPLASRCS-KFRFKP 186

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
              ++    ++   +   L V ++    +   S G  R A   L+     A
Sbjct: 187 LANDNAVQRLRYIVQQEELNVDEDVFSYLLTISNGDLRRAITYLQSAARLA 237


>gi|162448529|ref|YP_001610896.1| DNA polymerase III subunit tau [Sorangium cellulosum 'So ce 56']
 gi|161159111|emb|CAN90416.1| DNA polymerase III subunit Tau [Sorangium cellulosum 'So ce 56']
          Length = 829

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 63/324 (19%), Positives = 105/324 (32%), Gaps = 37/324 (11%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           RE +L              RP++ E+  GQ    + L      A AR       LF G  
Sbjct: 28  REKVLVEQRMSYVVLARKWRPQSFEDLVGQEHVSTTL----ANAIARDRVAHAFLFTGVR 83

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA--ALLTNLEDRDVLFID-----EIHR 116
           G+GKTT A+++A+ L        GP        A  A +T   D DV  ID      +  
Sbjct: 84  GVGKTTSARILAKALNC----VHGPTATPCQTCAPCAEITVGADVDVQEIDGASYNGVDE 139

Query: 117 LSIIVEEILYPAMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLT 167
           +  + E + Y    D     +V E             ++++        I ATT V  + 
Sbjct: 140 VRKLQESLPYRPARDRFKIFIVDEVHMLSNAAWNAFLKTLEEPPPHVKFIFATTEVHKVP 199

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             +  R            + +   ++       +   D A   +A  + G+ R A  LL 
Sbjct: 200 VTILSRCQ-RYDFKLIGAQAIAARLRWVLDQEKIPADDPALSALAREAAGSMRDAMSLLD 258

Query: 228 RVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNF-GGGPVGIETIS 286
           +V  +   +  +  T E     L             D   L  +A     G P     I 
Sbjct: 259 QVIAWVGTSGDRI-TAEGVAKVLGVA----------DRVVLHRLAGALVDGDPAACVRIV 307

Query: 287 AGLSEPRDAIEDLIEPYMIQQGFI 310
             L++    +  +   ++     +
Sbjct: 308 GELAQEGYDLPHVARDFLAHLRDL 331


>gi|74311049|ref|YP_309468.1| DNA polymerase III subunits gamma and tau [Shigella sonnei Ss046]
 gi|73854526|gb|AAZ87233.1| DNA polymerase III tau and gamma subunits [Shigella sonnei Ss046]
          Length = 641

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 53/306 (17%), Positives = 107/306 (34%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++        + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +A    A   +A  + G+ R A  L     D A  +    ++ +   A
Sbjct: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAIASGDGQVSTQAVSA 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L  D+       L  +  +    G   + +   +A      +A+   +   + +  
Sbjct: 240 MLGTLDDDQA------LSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIA 293

Query: 309 FIQRTP 314
            +Q +P
Sbjct: 294 MVQLSP 299


>gi|41406420|ref|NP_959256.1| DNA polymerase III subunits gamma and tau [Mycobacterium avium
           subsp. paratuberculosis K-10]
 gi|41394769|gb|AAS02639.1| DnaZX [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 612

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 48/237 (20%), Positives = 80/237 (33%), Gaps = 23/237 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T  E  GQ      L + +EA +         LF GP G GKT+ A+++AR
Sbjct: 2   ALYRKYRPATFAEVVGQEHVTEPLSIALEAGRINHAY----LFSGPRGCGKTSSARILAR 57

Query: 77  ELGVNFRSTSGPVIAKAGD--LAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAM 129
              +N             D  LA         DV+ +D      +     + +   Y   
Sbjct: 58  S--LNCVQGPTATPCGVCDSCLALAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPA 115

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +      +V E             + V+        I ATT    +   ++ R       
Sbjct: 116 QSRHRVFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSR-THHYPF 174

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                + ++ ++ R  +  G+ V D     +     G+PR    +L ++   AE  H
Sbjct: 175 RLLPPKTMRALIGRICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLVAGAEGGH 231


>gi|332250708|ref|XP_003274494.1| PREDICTED: replication factor C subunit 5 isoform 1 [Nomascus
           leucogenys]
          Length = 340

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 74/225 (32%), Gaps = 38/225 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA- 75
             +   RP+TL +     +  S ++ FI       + L H+L  GPPG GKT+     A 
Sbjct: 21  PWVEKYRPQTLNDLISHQDILSTIQKFIS-----EDRLPHLLLYGPPGTGKTSTILACAK 75

Query: 76  -----RELGVNFRSTSGPVIAKAGDLAA-LLTNLEDRDVL-------FIDEIHRLSIIVE 122
                +E G      +         +   +L+    R +         +DE   ++   +
Sbjct: 76  QLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQ 135

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             L   +E F       E      +   LS+                LQ R     R   
Sbjct: 136 NALRRVIEKF------TENTRFCLICNYLSKIIP------------ALQSRC-TRFRFGP 176

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
              E +   ++   +   + ++++    +   S G  R A  +L+
Sbjct: 177 LTPELMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNILQ 221


>gi|313895047|ref|ZP_07828604.1| DNA polymerase III, subunit gamma and tau [Selenomonas sp. oral
           taxon 137 str. F0430]
 gi|312975942|gb|EFR41400.1| DNA polymerase III, subunit gamma and tau [Selenomonas sp. oral
           taxon 137 str. F0430]
          Length = 617

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 51/251 (20%), Positives = 93/251 (37%), Gaps = 29/251 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP +  +  GQ      L   + + +         LF GP G GKT+ A+++AR L    
Sbjct: 11  RPTSFADLVGQEHISRTLSRAVTSGQTSHAY----LFTGPRGTGKTSTAKILARSLNC-- 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDR--DVLFID-----EIHRLSIIVEEILYPAMEDFQLD 135
               GP +   G   +     +    DV  ID      I  +  + E + +   E     
Sbjct: 65  --AQGPTLTPCGQCESCRAIADGSSMDVFEIDAASNRGIDEIRDLRETVKFAPTEGRCKI 122

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             ++++        I ATT    +   +Q R       +   + 
Sbjct: 123 YIIDEVHMLTTEAFNALLKTLEEPPPSVLFILATTEPHKVPATIQSRCQ-RYDFHRITVA 181

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +++  +    + +G+A  D+A   IA ++ G  R A  +L +    AE     T+T E  
Sbjct: 182 EIRERLSYVCRESGIAANDDALSIIAAQADGGMRDALSILDQCSALAE----GTLTAEQV 237

Query: 247 DAALLRLAIDK 257
             AL  +  ++
Sbjct: 238 QEALGLVGKER 248


>gi|116071743|ref|ZP_01469011.1| DNA-directed DNA polymerase [Synechococcus sp. BL107]
 gi|116065366|gb|EAU71124.1| DNA-directed DNA polymerase [Synechococcus sp. BL107]
          Length = 636

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 85/221 (38%), Gaps = 19/221 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  ++  GQ    + L   + + +         LF GP G GKT+ A+++AR L    
Sbjct: 13  RPQRFDQLVGQEAITATLGNALTSNRIA----PAYLFSGPRGTGKTSSARILARSLNCQN 68

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P      DL   + +    DV+ ID      +  +  ++E   +  ++      +
Sbjct: 69  SDGPTPEPCGTCDLCRTIASGTALDVIEIDAASNTGVDNIRELIERSRFAPVQARWKVYV 128

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           V E             ++++    +   + ATT    +   +  R           ++ L
Sbjct: 129 VDECHMLSTAAFNALLKTLEEPPPQVVFVLATTDPQRVLPTILSRCQ-RFDFRRIPLDAL 187

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           +  +   A+   +A+  EA   +A RS+G  R A  LL ++
Sbjct: 188 EQHLTWIAEQESIAIQPEAIHVVAQRSQGGLRDAESLLDQL 228


>gi|47115239|emb|CAG28579.1| RFC5 [Homo sapiens]
          Length = 340

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 74/225 (32%), Gaps = 38/225 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA- 75
             +   RP+TL +     +  S ++ FI       + L H+L  GPPG GKT+     A 
Sbjct: 21  PWVEKYRPQTLNDLISHQDILSTIQKFI-----NEDRLPHLLLYGPPGTGKTSTILACAK 75

Query: 76  -----RELGVNFRSTSGPVIAKAGDLAA-LLTNLEDRDVL-------FIDEIHRLSIIVE 122
                +E G      +         +   +L+    R +         +DE   ++   +
Sbjct: 76  QLYKDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQ 135

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             L   +E F       E      +   LS+                LQ R     R   
Sbjct: 136 NALRGVIEKF------TENTRFCLICNYLSKIIP------------ALQSRC-TRFRFGP 176

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
              E +   ++   +   + ++++    +   S G  R A  +L+
Sbjct: 177 LTPELMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNILQ 221


>gi|302308117|ref|NP_984925.2| AER065Cp [Ashbya gossypii ATCC 10895]
 gi|299789303|gb|AAS52749.2| AER065Cp [Ashbya gossypii ATCC 10895]
          Length = 774

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 58/265 (21%), Positives = 96/265 (36%), Gaps = 32/265 (12%)

Query: 20  SLLR------PR-TLEEFTGQVEACSNLKVFIEA--------AKARAEALDHVLFVGPPG 64
           S +R      P+    +  GQ +    ++  IE          + R      +L  GPPG
Sbjct: 496 SAMREIFLETPKVYWSDIAGQDQLKREMEEVIELPLKGAEKLKRLRITPPKGILLYGPPG 555

Query: 65  LGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDR------DVLFIDEIHR 116
             KT  A+ +A E G NF +  GP V+ K  G+    +  L  +       ++FIDEI  
Sbjct: 556 CSKTLTAKALATESGFNFFAIKGPEVLNKYVGETERTVRELFRKAKVAAPSIIFIDEIDE 615

Query: 117 LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RF 174
           L+   +E    +     L  ++ E          L+   ++AAT +  ++ + L    R 
Sbjct: 616 LAKTRDEDAGSSAAANVLITLLNEIDGVE----ELNGVVVVAATNKPHIIDSALIRSGRL 671

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
              I +   + E    I++   +  GL   D     +A ++      A   L R    A 
Sbjct: 672 DKHIYVAPPDFEARLQILRNNTRTFGLDDPDAILKRLAEQTAHCSGAAVAQLCRDAAIAA 731

Query: 235 VAHA---KTITREIADAALLRLAID 256
                    +       AL RL  D
Sbjct: 732 TREDYEGGNVEERHFLEALPRLTRD 756



 Score = 47.0 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 63/182 (34%), Gaps = 24/182 (13%)

Query: 32  GQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARELGVNFR 83
           G  +    LK  IEA     E            +L  GPPG GKT L + VA E   + +
Sbjct: 246 GLSKEIQQLKETIEAPLCDGEFYHECGVEPPRGILLHGPPGTGKTMLLRCVANENDAHVQ 305

Query: 84  STSGPVIAKA------GDLAALLTNLEDR--DVLFIDEIHRLSIIVE-EILYPAMEDFQL 134
             +GP +           L A+          ++ IDEI  ++   + +    A      
Sbjct: 306 IINGPSLTSKFLGETEERLRAIFDEARQFQPSIILIDEIDSIAPSRDSDDAGEAESRVVA 365

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIV 192
            L+        S  I      ++A T R   +   L+   RF + + +   +      I+
Sbjct: 366 TLLTLMDGVDSSGSI-----VVVATTNRPNKIDPALRRPGRFNVEVEIGVPDAAARLEIL 420

Query: 193 QR 194
            +
Sbjct: 421 MK 422


>gi|75908432|ref|YP_322728.1| AAA ATPase [Anabaena variabilis ATCC 29413]
 gi|75702157|gb|ABA21833.1| AAA ATPase, central region [Anabaena variabilis ATCC 29413]
          Length = 650

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 80/222 (36%), Gaps = 19/222 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP++  E  GQ    + L   I  AK         LF GP G GKT+ A+++A+ L    
Sbjct: 11  RPKSFAELVGQEAIATTLTNAIRTAKIA----PAYLFTGPRGTGKTSSARILAKSLNCLN 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                       D+   +T     DV+ ID      +  +  ++E+  +  ++      +
Sbjct: 67  SDKPTAEPCGVCDVCQGITKGYSLDVIEIDAASNTGVDNIRELIEKAQFAPVQCRYKVYV 126

Query: 138 VGEGPSARSVKIN---------LSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E     S   N               + ATT    +   +  R          ++E +
Sbjct: 127 IDECHMLSSAAFNALLKTLEEPPKHVVFVLATTDPQRVLPTIISRCQ-RFDFRRIQLEAM 185

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
              +   A    + ++ EA   +A  S+G  R A  LL ++ 
Sbjct: 186 VKHLSAIASKENINISLEAVTLVAQLSQGGLRDAESLLDQLA 227


>gi|116754010|ref|YP_843128.1| ATPase central domain-containing protein [Methanosaeta thermophila
           PT]
 gi|116665461|gb|ABK14488.1| AAA ATPase, central domain protein [Methanosaeta thermophila PT]
          Length = 385

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 60/254 (23%), Positives = 106/254 (41%), Gaps = 21/254 (8%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKV----FIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
             +++ P + ++  GQ++A   +KV      E  +  + A  ++LF G  G GKT +A+ 
Sbjct: 128 PAAVVEPASFDDVVGQLDAKRKVKVIKRYLEEPERFGSWAPRNILFYGASGTGKTMIARA 187

Query: 74  VARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEIH--RLSIIVEE 123
           +A E  V+        +     G+ A  + +L DR       ++FIDEI    L    ++
Sbjct: 188 LATEANVSMMPVKSTSLIGEFVGEGARQIHSLYDRAEQLSPCIIFIDEIDAIALDRRYQD 247

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +     E     L   +G S+R           IAAT ++ LL   ++ RF   I     
Sbjct: 248 LRGDVSEIVNALLTEMDGISSRRG------VCTIAATNKIELLDPSIRSRFEEEIEFKLP 301

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPR-IAGRLLRRVRDFAEVAHAKTIT 242
             ED   I++R A    L V  + A    +    + R +  ++L+     A +  ++ + 
Sbjct: 302 SHEDRLEILRRNASKMPLEVRGDLAEIAKLTEGFSGRDLVDKILKVALHQAIIEDSRFVE 361

Query: 243 REIADAALLRLAID 256
           R     AL R+  D
Sbjct: 362 RRHLMDALQRIKRD 375


>gi|327182904|gb|AEA31351.1| DNA polymerase III subunits gamma and tau [Lactobacillus amylovorus
           GRL 1118]
          Length = 602

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 82/224 (36%), Gaps = 21/224 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPRT +   GQ      LK  I     R +     LF GP G GKT+ A++ A+ L    
Sbjct: 11  RPRTFDSVIGQEAITDTLKNAI----IRGKVSHAFLFAGPRGTGKTSCAKIFAKALNCTN 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P    A  +AA   ++   D++ ID      +  +  I +++ Y   E      +
Sbjct: 67  LQDGEPCNKCANCIAADQGSMP--DIMEIDAASNNGVDEIREIRDKVKYAPTEGKYKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT +  +   +  R             DL
Sbjct: 125 IDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRI-SKADL 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           +  ++       +   D+A   IA  + G  R A  +L ++  +
Sbjct: 184 EKRMKYILDQENIKYEDKAIAVIAQVADGGMRDALSILDQLLSY 227


>gi|164658640|ref|XP_001730445.1| hypothetical protein MGL_2241 [Malassezia globosa CBS 7966]
 gi|159104341|gb|EDP43231.1| hypothetical protein MGL_2241 [Malassezia globosa CBS 7966]
          Length = 353

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 46/253 (18%), Positives = 85/253 (33%), Gaps = 46/253 (18%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           + ++    +   RP++++E   Q  A + L+  + +A      L H+LF GPPG GKT+ 
Sbjct: 2   STAESQPWVERYRPKSIDEVASQQHAVNVLRKALTSA-----NLPHMLFYGPPGTGKTST 56

Query: 71  AQVVAR-------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD-------VLF 110
              +AR             EL  +       V  K    A    +  + D       ++ 
Sbjct: 57  ILALARQLYGPELMRSRVLELNASDERGISVVRDKIKSFARAAVSAPNPDYPSPPYKIVI 116

Query: 111 IDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA-TTRVGLLTNP 169
           +DE   ++   +  L   ME +                   SR T        V  +  P
Sbjct: 117 LDEADSMTQDAQGALRRIMEQY-------------------SRITRFCLVCNYVTRIIEP 157

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           +  R     R    ++   +  +   A++ GL +  +    +   S G  R +   L+ +
Sbjct: 158 VASRCS-KFRFRPLDVASTEARLLHIAQMEGLRLNPDLVPVLIRSSEGDMRRSITYLQSI 216

Query: 230 RDFAEVAHAKTIT 242
              A         
Sbjct: 217 ARLASARGGDVRD 229


>gi|42559517|sp|Q975D4|RFCL_SULTO RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
          Length = 440

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 82/222 (36%), Gaps = 34/222 (15%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+TL E   + +A   L  +IE+          VL  GPPG+GKTTLA+ +AR+  +  
Sbjct: 10  RPKTLNEVENEEDAKKELVEWIESWLKGKPNYKAVLLYGPPGVGKTTLAEALARDYKLEL 69

Query: 83  RSTSGPVIAKAGDLAALLTNLE--------DRDVLFIDEIHRLSIIVE----EILYPAME 130
              +        D+  +                ++ +DE+  L+   +    + +   + 
Sbjct: 70  FEMNASDSRNLNDIRTMAERASITGTIFGIKGKLILLDEVDGLNARADAGAIDAILELIN 129

Query: 131 DFQLDLMVGEG-PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             +  +++    P   S++   +   +I                              LK
Sbjct: 130 KTKYPIILTANDPWDPSLRPLRNAVKMIELKRLTKY---------------------PLK 168

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            I+++  +   +   DEA   I  +S G  R A  +L+ V +
Sbjct: 169 RILKKICEAEKITCEDEALDFIIEQSEGDARYAINMLQGVAE 210


>gi|213514520|ref|NP_001135046.1| replication factor C subunit 5 [Salmo salar]
 gi|209738250|gb|ACI69994.1| Replication factor C subunit 5 [Salmo salar]
          Length = 335

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 70/218 (32%), Gaps = 29/218 (13%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           S+    +   RP+TL++     +  S ++ FI       + L H+LF GPPG GKT+   
Sbjct: 11  SRNLPWVEKYRPQTLDDLISHKDILSTIQKFIS-----EDRLPHLLFYGPPGTGKTSTVL 65

Query: 73  VVA------RELGVNFRSTSGPVIAKAGDLAA-LLTNLEDRDVL-------FIDEIHRLS 118
             A      +E        +         +   +L+    R +         +DE   ++
Sbjct: 66  ASAKQLYKEKEFNAMVLELNASDDRGIDVVRGPILSFASTRTIFKKGFKLVILDEADAMT 125

Query: 119 IIVEEILYPAMEDFQLD--LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
              +  L   +E +  +    +     ++ +    SR T             P +  F I
Sbjct: 126 RDAQNALRRVIEKYTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSQDQMIP-RLEFVI 184

Query: 177 PIRLNFYEIEDLKTIV-------QRGAKLTGLAVTDEA 207
                    + +K IV       +R   +         
Sbjct: 185 QQESIDVTPDGMKAIVTLSSGDMRRSLNILQSTSMAYG 222


>gi|149203327|ref|ZP_01880297.1| DNA polymerase III subunits gamma and tau [Roseovarius sp. TM1035]
 gi|149143160|gb|EDM31199.1| DNA polymerase III subunits gamma and tau [Roseovarius sp. TM1035]
          Length = 588

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 64/300 (21%), Positives = 107/300 (35%), Gaps = 31/300 (10%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T  +  GQ      LK   +A +         +  G  G GKTT A+++A+ +
Sbjct: 13  ARKYRPETFADLVGQDAMVRTLKNAFQADRIAQA----FIMTGIRGTGKTTTARIIAKGM 68

Query: 79  GV-NFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSI-----IVEEILYPAME 130
                    GP     G        +E R  DV+ +D   R  +     I+E + Y A  
Sbjct: 69  NCIGPDGQGGPTTEPCGQCEHCRAIMEGRHVDVMEMDAASRTGVGDIREIIESVNYRAAS 128

Query: 131 DFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
                 ++ E             ++++   +    I ATT +  +   +  R      L 
Sbjct: 129 ARYKIYIIDEVHMLSVNAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLSRCQ-RFDLR 187

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
             E E +  +++R A   G  +TD+A   I   + G+ R A  LL    D A    A   
Sbjct: 188 RIEPEVMIALLRRIADREGAQITDDALALITRAAEGSARDATSLL----DQAISHGAGET 243

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T +   A L      ++  D  D     ++  +  G    +    A  ++P   + DL E
Sbjct: 244 TADQVRAMLGLADRGRV-LDLFD----MILRGDAAGALSELSAQYAEGADPLAVLRDLAE 298


>gi|312792713|ref|YP_004025636.1| DNA polymerase III subunits gamma and tau [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312179853|gb|ADQ40023.1| DNA polymerase III, subunits gamma and tau [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 534

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 90/236 (38%), Gaps = 25/236 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP+  E+   Q      LK  I+  K         +F GP G GKTT A++++R
Sbjct: 4   ALYRKYRPKVFEDVVAQEHITKTLKNQIKQDKVAHAY----IFCGPRGTGKTTTAKIMSR 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHRLSII-----VEEILYPAM 129
            +         P      +     + L+++   VL ID     S+       +E+ YP  
Sbjct: 60  AVNCLNPKDGNP----CNECEVCRSILDEKTLDVLEIDAASNTSVNDVRQIRDEVRYPPS 115

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
              +   ++ E             ++++   S    I ATT +  +   +  R       
Sbjct: 116 MCKKKVYIIDEVHMLSTGAFNALLKTLEEPPSHALFILATTDIQKVPATILSRCQ-RFDF 174

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
               ++D+   +++  ++  +++ D A   I+ ++ G  R A  +L R  + ++  
Sbjct: 175 KRISVKDIYERLKKIVQMENISIDDNALYLISQKAEGALRDALTILERCINTSDEH 230


>gi|71986063|ref|NP_498750.2| hypothetical protein F44B9.8 [Caenorhabditis elegans]
 gi|55584161|sp|P34429|RFC5_CAEEL RecName: Full=Probable replication factor C subunit 5; AltName:
           Full=Activator 1 subunit 5
 gi|52839833|gb|AAK95878.2|L23648_8 Hypothetical protein F44B9.8 [Caenorhabditis elegans]
          Length = 368

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 61/187 (32%), Gaps = 30/187 (16%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           ++   +     +   RP  L+E     +    L  FIE        L H+LF GPPG GK
Sbjct: 21  MTTTTASNLPWVEKYRPSKLDELVAHEQIVKTLTKFIE-----NRTLPHLLFYGPPGTGK 75

Query: 68  TTLAQVVAR-------------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDV 108
           TT     AR                   E G++    +    A+   L A  T+     V
Sbjct: 76  TTTVLAAARQMYSPTKMASMVLELNASDERGIDVVRNTIVNFAQTKGLQAFSTSSNTGTV 135

Query: 109 LF----IDEIHRLSIIVEEILYPAMEDFQ--LDLMVGEGPSARSVKINLSRFTLIAATTR 162
            F    +DE   ++   +  L   +E +   +   +     A  V    SR T       
Sbjct: 136 PFKLVILDEADAMTKDAQNALRRVIEKYTDNVRFCIICNYLASIVPAIQSRCTRFRFAPL 195

Query: 163 VGLLTNP 169
              L  P
Sbjct: 196 DQKLIVP 202


>gi|315037610|ref|YP_004031178.1| DNA polymerase III, gamma/tau subunit [Lactobacillus amylovorus GRL
           1112]
 gi|312275743|gb|ADQ58383.1| DNA polymerase III, gamma/tau subunit [Lactobacillus amylovorus GRL
           1112]
          Length = 602

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 82/224 (36%), Gaps = 21/224 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPRT +   GQ      LK  I     R +     LF GP G GKT+ A++ A+ L    
Sbjct: 11  RPRTFDSVIGQEAITDTLKNAI----IRGKVSHAFLFAGPRGTGKTSCAKIFAKALNCTN 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P    A  +AA   ++   D++ ID      +  +  I +++ Y   E      +
Sbjct: 67  LQDGEPCNKCANCIAADQGSMP--DIMEIDAASNNGVDEIREIRDKVKYAPTEGKYKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT +  +   +  R             DL
Sbjct: 125 IDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRI-SKADL 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           +  ++       +   D+A   IA  + G  R A  +L ++  +
Sbjct: 184 EKRMKYILDQENIKYEDKAIAVIAQVADGGMRDALSILDQLLSY 227


>gi|331661852|ref|ZP_08362775.1| DNA polymerase III subunit tau [Escherichia coli TA143]
 gi|331060274|gb|EGI32238.1| DNA polymerase III subunit tau [Escherichia coli TA143]
          Length = 526

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 54/306 (17%), Positives = 107/306 (34%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++        + ATT    L   +  R  +   L   +IE +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDIEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +A    A   +A  + G+ R A  L     D A  +    ++ +   A
Sbjct: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAIASGDGQVSTQAVSA 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L  D+       L  +  +    G   + +   +A      +A+   +   + +  
Sbjct: 240 MLGTLDDDQA------LSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIA 293

Query: 309 FIQRTP 314
            +Q +P
Sbjct: 294 MVQLSP 299


>gi|302390663|ref|YP_003826484.1| DNA polymerase III, subunits gamma and tau [Thermosediminibacter
           oceani DSM 16646]
 gi|302201291|gb|ADL08861.1| DNA polymerase III, subunits gamma and tau [Thermosediminibacter
           oceani DSM 16646]
          Length = 571

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 55/232 (23%), Positives = 82/232 (35%), Gaps = 25/232 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RPR  +E  GQ      LK  I   K         LF G  G GKT+ A+V A+
Sbjct: 5   ALYRRYRPRDFDEIVGQEAIVRTLKNQIRTGKIGHAY----LFCGMRGTGKTSTARVFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR--DVLFID-----EIHRLSIIVEEILYPAM 129
            L        GP           L   E    DV+ +D      I  +  + E + +P  
Sbjct: 61  ALNCE----QGPTDTPCNRCRNCLAINEGGMIDVIEMDAASNRGIDDIRTLRESVNFPPS 116

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           E      ++ E             ++++        I ATT    L + +  R       
Sbjct: 117 EGRYRVYIIDEVHMLTTEAFNALLKTLEEPPEHVVFILATTEPNKLPSTILSRCMRFDFR 176

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
                E L + ++R +   G+   D+A   IA  S+G+ R A  LL +   F
Sbjct: 177 RVQTRE-LVSHLKRISAENGVEAEDKALALIARSSQGSMRDALSLLDKALAF 227


>gi|296101605|ref|YP_003611751.1| DNA polymerase III subunits gamma and tau [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295056064|gb|ADF60802.1| DNA polymerase III subunits gamma and tau [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 637

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 54/317 (17%), Positives = 108/317 (34%), Gaps = 31/317 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 7   RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 60

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 61  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYL 120

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++   +    + ATT    L   +  R  +   L   ++E +
Sbjct: 121 IDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 179

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +T ++       +     A   +A  + G+ R A  L     D A  +    ++ E    
Sbjct: 180 RTQLEHILDEENIVHEPRALQLLARAADGSLRDALSL----TDQAIASGDGKLSTEAVST 235

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L  D+       L  +       G   + +   +A      +A+   +   + +  
Sbjct: 236 MLGTLDDDQA------LSLIEATIAANGERVMSLVNAAAARGVEWEALLVEMLSLLHRVA 289

Query: 309 FIQRTPRGRLLMPIAWQ 325
            +Q +P        A +
Sbjct: 290 MLQLSPSAMGADMAAIE 306


>gi|158520559|ref|YP_001528429.1| DNA polymerase III, subunits gamma and tau [Desulfococcus
           oleovorans Hxd3]
 gi|158509385|gb|ABW66352.1| DNA polymerase III, subunits gamma and tau [Desulfococcus
           oleovorans Hxd3]
          Length = 570

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 51/248 (20%), Positives = 92/248 (37%), Gaps = 29/248 (11%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+T EE   Q +    L   I + +        +LF GP G GKTT+A+++A+ +
Sbjct: 7   ARKYRPQTFEEVVEQQQVTRTLTNAIASGRVAHA----ILFTGPRGTGKTTIARILAKAM 62

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIV------EEILYPAME 130
                   GP         + L        DV  ID     S+             PA  
Sbjct: 63  NCEK----GPTPTPCCACRSCLEIASGNATDVFEIDGASNNSVDQVRELRGNVKFMPAHS 118

Query: 131 DFQLDLMVG----EGPSARSVKINL----SRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
            +++ ++       GP+  ++   L    +      ATT    +   +  R      L+F
Sbjct: 119 PYKIYIIDEVHMLSGPAFNALLKTLEEPPAHVMFFFATTEPHKIPVTILSRCQ-RHDLSF 177

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
             I+ L   ++   +   + +  ++   IA  + G+ R +  LL +V   A+      ++
Sbjct: 178 VGIDPLVAHLETLCEKENIPIEKKSLELIAHEAGGSVRDSLSLLDQVMSSAQ----GPVS 233

Query: 243 REIADAAL 250
            E+   AL
Sbjct: 234 HEMVLEAL 241


>gi|149720613|ref|XP_001490846.1| PREDICTED: replication factor C (activator 1) 5, 36.5kDa [Equus
           caballus]
          Length = 340

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 75/225 (33%), Gaps = 38/225 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA- 75
             +   RP+TL +     +  S ++ FI       + L H+L  GPPG GKT+     A 
Sbjct: 21  PWVEKYRPQTLNDLISHQDILSTIQKFIS-----EDRLPHLLLYGPPGTGKTSTILACAK 75

Query: 76  -----RELGVNFRSTSGPVIAKAGDLAA-LLTNLEDRDVL-------FIDEIHRLSIIVE 122
                +E G      +         +   +L+    R +         +DE   ++   +
Sbjct: 76  QLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQ 135

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             L   +E F       E      +   LS+                LQ R     R   
Sbjct: 136 NALRRVIEKF------TENTRFCLICNYLSKIIP------------ALQSRC-TRFRFGP 176

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
              E +   +Q   +   +A++++    +   S G  R A  +L+
Sbjct: 177 LTPELMVPRLQHVVEEEKVAISEDGMKALVTLSSGDMRRALNILQ 221


>gi|296213044|ref|XP_002753107.1| PREDICTED: replication factor C subunit 5 [Callithrix jacchus]
          Length = 340

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 74/225 (32%), Gaps = 38/225 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA- 75
             +   RP+TL +     +  S ++ FI       + L H+L  GPPG GKT+     A 
Sbjct: 21  PWVEKYRPQTLNDLISHQDILSTIQKFIS-----EDRLPHLLLYGPPGTGKTSTILACAK 75

Query: 76  -----RELGVNFRSTSGPVIAKAGDLAA-LLTNLEDRDVL-------FIDEIHRLSIIVE 122
                +E G      +         +   +L+    R +         +DE   ++   +
Sbjct: 76  QLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQ 135

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             L   +E F       E      +   LS+                LQ R     R   
Sbjct: 136 NALRRVIEKF------TENTRFCLICNYLSKIIP------------ALQSRC-TRFRFGP 176

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
              E +   ++   +   + ++++    +   S G  R A  +L+
Sbjct: 177 LTPELMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNILQ 221


>gi|270307654|ref|YP_003329712.1| Holliday junction DNA helicase [Dehalococcoides sp. VS]
 gi|270153546|gb|ACZ61384.1| Holliday junction DNA helicase [Dehalococcoides sp. VS]
          Length = 312

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 54/213 (25%), Positives = 88/213 (41%), Gaps = 14/213 (6%)

Query: 27  LEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTS 86
             +  G  +    LK     A   AE   H++  GPP L KT     + +  G       
Sbjct: 99  FTDIIGHDDVKELLK-----ATLLAEKPVHIMLTGPPALAKTLFLWDIEQTFGEQAIWLV 153

Query: 87  GPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARS 146
           G   +KAG L  L+   E + +L IDE+ +++ +    L   ME  +L          R 
Sbjct: 154 GSATSKAG-LWDLVAEREPK-ILLIDEMDKMNAVDMAALLTLMEGGRLV----RAKRGRE 207

Query: 147 VKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDE 206
           + IN +   ++AA+ R+  L+  L+ RF I     +   E L   V +G  +    +++E
Sbjct: 208 LDIN-NPLKVVAASNRLEKLSPELRSRFAIRKLNPYSRSEFLT--VVKGVLVRKENLSEE 264

Query: 207 AACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
            A +IA R  G  +     +R  R   +V   K
Sbjct: 265 MAQDIASRLDGISQDVRDAIRVARLAPQVGVDK 297


>gi|118386221|ref|XP_001026231.1| ATPase, AAA family protein [Tetrahymena thermophila]
 gi|89307998|gb|EAS05986.1| ATPase, AAA family protein [Tetrahymena thermophila SB210]
          Length = 321

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 56/318 (17%), Positives = 109/318 (34%), Gaps = 56/318 (17%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           ++ ++  +   RPRTL+E  G  +A   L+   E        + +++ VGPPG+GKT+  
Sbjct: 1   MASKEIWLEKYRPRTLDEVQGNEDALIKLRTIAEEG-----NVPNMILVGPPGIGKTSSV 55

Query: 72  QVVAR------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRL 117
             +AR            E+  +       V  K    A    NL+     ++ +DE   L
Sbjct: 56  LCLARTLLADVFDSCALEMNASDERGIDVVREKIKSFAQKKVNLKPGLHKIIILDEADSL 115

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           +   ++ L   + DF                 + +RF L  +      L + +Q R  I 
Sbjct: 116 TEGAQQALRMIISDF----------------ADTTRFVL--SCNDSSKLIDAIQSRCAI- 156

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
           +R      E +   ++   +   + +       +     G  R A   L+      ++ +
Sbjct: 157 LRFTKLTDEQILRRLEEIVEKENIKIDKGGKEALLFTCEGDMRQAINNLQATYTAFKLVN 216

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYL-TMIARNFGGGPVGIETISAGLSEPRDAI 296
            + + +                 D  ++  L  +IA    G     +     L E     
Sbjct: 217 KENVLKVC---------------DVPNVEVLQQVIAECVNGNFHAAQKKLYPLWEEGYTA 261

Query: 297 EDLI--EPYMIQQGFIQR 312
            DL+     +IQ   + +
Sbjct: 262 YDLVNNLYKLIQTQDMDK 279


>gi|50552766|ref|XP_503793.1| YALI0E10747p [Yarrowia lipolytica]
 gi|49649662|emb|CAG79384.1| YALI0E10747p [Yarrowia lipolytica]
          Length = 378

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 47/248 (18%), Positives = 87/248 (35%), Gaps = 25/248 (10%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           S+N +     +   RP++L++ + Q  A + LK  + +A      L H+LF GPPG GKT
Sbjct: 20  SKNKAPP-PWVEKYRPKSLDDVSSQDHAVTVLKRTLGSA-----NLPHMLFYGPPGTGKT 73

Query: 69  TLAQVVARE------LGVNFRSTSGPVIAKAGDLAALLTN-LEDRDVLFIDEIHRLSIIV 121
           +    +A+E      +       +         +   + N    + V   D I       
Sbjct: 74  STVLALAKELYGPELMKDRVLELNASDERGIAIVRDSIKNFAAQKVVAPKDHIAEKYP-- 131

Query: 122 EEILYPAMEDFQLDLMVGEGPSA-----RSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
                P  +   LD        A     R+++   ++         V  + +PL  R   
Sbjct: 132 ----CPPFKIIILDEADSMTTDAQSALRRTMETYSAQTRFCLICNYVTRIIDPLASRCS- 186

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
             R    +  D    ++  +    L+V D    +I   + G  R A  +L+     +  +
Sbjct: 187 KFRFRLLDGNDALARLRHVSDAEQLSVEDGVLEKILEVANGDLRRAITILQSCSRLSGES 246

Query: 237 HAKTITRE 244
            A     +
Sbjct: 247 SAAQNDED 254


>gi|312877704|ref|ZP_07737658.1| DNA polymerase III, subunits gamma and tau [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311795505|gb|EFR11880.1| DNA polymerase III, subunits gamma and tau [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 536

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 90/236 (38%), Gaps = 25/236 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP+  E+   Q      LK  I+  K         +F GP G GKTT A++++R
Sbjct: 6   ALYRKYRPKVFEDVVAQEHITKTLKNQIKQDKVAHAY----IFCGPRGTGKTTTAKIMSR 61

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHRLSII-----VEEILYPAM 129
            +         P      +     + L+++   VL ID     S+       +E+ YP  
Sbjct: 62  AVNCLNPKDGNP----CNECEVCRSILDEKTLDVLEIDAASNTSVNDVRQIRDEVRYPPS 117

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
              +   ++ E             ++++   S    I ATT +  +   +  R       
Sbjct: 118 MCKKKVYIIDEVHMLSTGAFNALLKTLEEPPSHALFILATTDIQKVPATILSRCQ-RFDF 176

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
               ++D+   +++  ++  +++ D A   I+ ++ G  R A  +L R  + ++  
Sbjct: 177 KRISVKDIYERLKKIVQMENISIDDNALYLISQKAEGALRDALTILERCINTSDEH 232


>gi|71000134|ref|XP_754784.1| DNA replication factor C subunit Rfc2 [Aspergillus fumigatus Af293]
 gi|66852421|gb|EAL92746.1| DNA replication factor C subunit Rfc2, putative [Aspergillus
           fumigatus Af293]
 gi|159127792|gb|EDP52907.1| DNA replication factor C subunit Rfc2, putative [Aspergillus
           fumigatus A1163]
          Length = 394

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 47/244 (19%), Positives = 77/244 (31%), Gaps = 57/244 (23%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+TL++   Q      L+  ++A+      L H+LF GPPG GKT+    +A+
Sbjct: 40  PWVEKYRPKTLDDVAAQDHTTKVLQRTLQAS-----NLPHMLFYGPPGTGKTSTILALAK 94

Query: 77  -------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD---------------- 107
                        EL  +     G V  K    A   T L                    
Sbjct: 95  SLFGPALYRSRILELNASDERGIGIVREKVKGFA--RTQLSQPTGLDSSYFEQYPCPPFK 152

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA-TTRVGLL 166
           ++ +DE   ++   +  L   ME +                   SR T        V  +
Sbjct: 153 IIILDEADSMTQDAQSALRRTMEQY-------------------SRITRFCLVCNYVTRI 193

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
             PL  R     R    +       +   A+L  L + +    ++   S G  R A   +
Sbjct: 194 IEPLASRCS-KFRFKPLDNSAAAERLAHIARLENLKLDEGVIDKLISCSEGDLRRAITYM 252

Query: 227 RRVR 230
           +   
Sbjct: 253 QSAA 256


>gi|331681865|ref|ZP_08382498.1| DNA polymerase III subunit tau [Escherichia coli H299]
 gi|331081067|gb|EGI52232.1| DNA polymerase III subunit tau [Escherichia coli H299]
          Length = 643

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 53/306 (17%), Positives = 107/306 (34%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++        + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +A    A   +A  + G+ R A  L     D A  +    ++ +   A
Sbjct: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAIASGDGQVSTQAVSA 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L  D+       L  +  +    G   + +   +A      +A+   +   + +  
Sbjct: 240 MLGTLDDDQA------LSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIA 293

Query: 309 FIQRTP 314
            +Q +P
Sbjct: 294 MVQLSP 299


>gi|324010051|gb|EGB79270.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS
           57-2]
          Length = 643

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 53/306 (17%), Positives = 107/306 (34%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++        + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +A    A   +A  + G+ R A  L     D A  +    ++ +   A
Sbjct: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAIASGDGQVSTQAVSA 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L  D+       L  +  +    G   + +   +A      +A+   +   + +  
Sbjct: 240 MLGTLDDDQA------LSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIA 293

Query: 309 FIQRTP 314
            +Q +P
Sbjct: 294 MVQLSP 299


>gi|215485550|ref|YP_002327981.1| DNA polymerase III subunits gamma and tau [Escherichia coli O127:H6
           str. E2348/69]
 gi|312964465|ref|ZP_07778759.1| DNA polymerase III, subunits gamma and tau [Escherichia coli
           2362-75]
 gi|215263622|emb|CAS07953.1| DNA polymerase III/DNA elongation factor III, tau and gamma
           subunits [Escherichia coli O127:H6 str. E2348/69]
 gi|312290942|gb|EFR18818.1| DNA polymerase III, subunits gamma and tau [Escherichia coli
           2362-75]
          Length = 643

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 53/306 (17%), Positives = 107/306 (34%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++        + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +A    A   +A  + G+ R A  L     D A  +    ++ +   A
Sbjct: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAIASGDGQVSTQAVSA 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L  D+       L  +  +    G   + +   +A      +A+   +   + +  
Sbjct: 240 MLGTLDDDQA------LSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIA 293

Query: 309 FIQRTP 314
            +Q +P
Sbjct: 294 MVQLSP 299


>gi|187733496|ref|YP_001879179.1| DNA polymerase III subunits gamma and tau [Shigella boydii CDC
           3083-94]
 gi|187430488|gb|ACD09762.1| DNA polymerase III, tau subunit [Shigella boydii CDC 3083-94]
          Length = 643

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 53/306 (17%), Positives = 107/306 (34%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++        + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +A    A   +A  + G+ R A  L     D A  +    ++ +   A
Sbjct: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAIASGDGQVSTQAVSA 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L  D+       L  +  +    G   + +   +A      +A+   +   + +  
Sbjct: 240 MLGTLDDDQA------LSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIA 293

Query: 309 FIQRTP 314
            +Q +P
Sbjct: 294 MVQLSP 299


>gi|229552944|ref|ZP_04441669.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1]
 gi|258540445|ref|YP_003174944.1| DNA polymerase III gamma and tau subunits [Lactobacillus rhamnosus
           Lc 705]
 gi|229313688|gb|EEN79661.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1]
 gi|257152121|emb|CAR91093.1| DNA polymerase III gamma and tau subunits [Lactobacillus rhamnosus
           Lc 705]
          Length = 565

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 58/295 (19%), Positives = 103/295 (34%), Gaps = 32/295 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  ++  GQ      LK     A    +     LF GP G GKT++A+++A+ L    
Sbjct: 11  RPQQFKDVIGQDAITKTLK----NALITGQTSHAYLFTGPRGTGKTSVAKILAKALNCLH 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P      ++   + +    DV+ ID      +  +  I ++  Y          +
Sbjct: 67  LEDGEPDNTC--EICQAINDGSLTDVIEIDAASNNGVDEIRDIRDKAKYAPTRARVKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++   +    I ATT    +   +  R            ED+
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPAHVVFILATTEPHKIPATIISRTQ-RFDFRRITPEDI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              ++       +   D A   IA  + G  R A  +L +V  F        +T E A  
Sbjct: 184 VKRMRFILDDKQITYDDAALKVIAKAAEGGMRDALSILDQVLSF----GDNHVTTEDALD 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTM-IARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
               +    +G      +YL   +A++       +E + A   +    IEDLIE 
Sbjct: 240 VTGGVTTAVLG------KYLAAVLAKDHAQALKMVEDLLAAGKDAGRLIEDLIEY 288


>gi|237730453|ref|ZP_04560934.1| DNA polymerase III gamma and tau [Citrobacter sp. 30_2]
 gi|226905992|gb|EEH91910.1| DNA polymerase III gamma and tau [Citrobacter sp. 30_2]
          Length = 642

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 54/306 (17%), Positives = 108/306 (35%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++   +    + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++   K   +A    A   +A  + G+ R A  L     D A  +    ++ E    
Sbjct: 184 RHQLEHILKEEHIAHEPRALQLLARAADGSLRDALSL----TDQAIASGDGQVSTEAVST 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L  D+       L  +  +    G   + +   +A      +A+   +   + +  
Sbjct: 240 MLGTLDDDQA------LSLVEAVVAADGERVMALVNDAAARGIEWEALLVEMSALLHRIA 293

Query: 309 FIQRTP 314
            +Q +P
Sbjct: 294 MVQLSP 299


>gi|159905310|ref|YP_001548972.1| ATPase central domain-containing protein [Methanococcus maripaludis
           C6]
 gi|159886803|gb|ABX01740.1| AAA ATPase central domain protein [Methanococcus maripaludis C6]
          Length = 371

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 46/190 (24%), Positives = 80/190 (42%), Gaps = 16/190 (8%)

Query: 25  RTLEEFTGQVEACSNLKVFI---EAAKARAE-ALDHVLFVGPPGLGKTTLAQVVARELGV 80
              EE  GQ++A    K+ I   E  +   E A  ++LF GPPG GKT LA+ +A E  V
Sbjct: 123 TNFEEVIGQLDAKKKCKIVIKYLENPEIFGEWAPKNILFYGPPGTGKTMLARALATETDV 182

Query: 81  NFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDF 132
                    +        +  + +L  +  +    ++FIDE+  +++  +          
Sbjct: 183 PLYLIKATELIGDHVGDGSKQIESLYESASENTPCIIFIDELDAIALSRQFQSLRGDVSE 242

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            ++ ++ E      +K NL   T IAAT    LL + ++ RF   I     +  +   I+
Sbjct: 243 VVNALLTELDG---IKDNLGIVT-IAATNNPELLDSAVRSRFEEEIEFKMPDDNERLKIL 298

Query: 193 QRGAKLTGLA 202
           +  AK   + 
Sbjct: 299 ELYAKKMPIT 308


>gi|333008160|gb|EGK27635.1| DNA polymerase III, subunits gamma and tau [Shigella flexneri VA-6]
          Length = 641

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 53/306 (17%), Positives = 107/306 (34%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++        + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +A    A   +A  + G+ R A  L     D A  +    ++ +   A
Sbjct: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAIASGDGQVSTQAVSA 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L  D+       L  +  +    G   + +   +A      +A+   +   + +  
Sbjct: 240 MLGTLDDDQA------LSLVEAMVEGNGERVMALINEAAARGIEWEALLVEMLGLLHRIA 293

Query: 309 FIQRTP 314
            +Q +P
Sbjct: 294 MVQLSP 299


>gi|282901379|ref|ZP_06309304.1| AAA ATPase, central region protein [Cylindrospermopsis raciborskii
           CS-505]
 gi|281193658|gb|EFA68630.1| AAA ATPase, central region protein [Cylindrospermopsis raciborskii
           CS-505]
          Length = 660

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 61/336 (18%), Positives = 110/336 (32%), Gaps = 47/336 (13%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +      RP++  E  GQ    + L   I   K         LF GP G GKT+ A+++A
Sbjct: 4   EPLHHKYRPKSFAELVGQEAIATTLTNAISLVKIA----PAYLFTGPRGTGKTSSARILA 59

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAME 130
           + L         P      D    +T     DV+ ID      +  +  ++E+  +  ++
Sbjct: 60  KSLNCLQTGHPTPTPCGVCDTCQGITKGYSLDVIEIDAASNTGVDNIRELIEKAQFAPVQ 119

Query: 131 DFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
                 ++ E             ++++        + ATT    +   +  R        
Sbjct: 120 CRYKVYVIDECHMLSAAAFNALLKTLEEPPKHVVFVLATTDPQRVLPTIISRCQ-RFDFR 178

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA-EVAHAKT 240
             ++E +   + + A    + ++ +A   +A  S+G  R A  LL ++     EV+  + 
Sbjct: 179 RIQLEAMVKHLSKIAYNENIPISQDAITLVAQISQGGLRDAESLLDQLALLPGEVSPEQV 238

Query: 241 IT-----REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDA 295
                   E    ALL+          LD                    I     EP   
Sbjct: 239 WDLVGSVSEKDLFALLQAIAQNDSEKVLDHT----------------RNILDRGREPLII 282

Query: 296 IEDLIEPYMIQQGFIQRTPRGRL----LMPIAWQHL 327
           +++L   Y  +   I +T   R          WQ L
Sbjct: 283 LQNLGAFY--RDLLIAKTASSRQDLVSCTQETWQQL 316


>gi|71894079|ref|YP_278187.1| DNA polymerase III subunits gamma and tau [Mycoplasma synoviae 53]
 gi|71850867|gb|AAZ43476.1| DNA polymerase III gamma and tau subunit [Mycoplasma synoviae 53]
          Length = 609

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 52/255 (20%), Positives = 80/255 (31%), Gaps = 48/255 (18%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
              RP+   E  GQ      L   I + K         LF GP G GKT+ A+V A+ L 
Sbjct: 8   RKYRPQNFHEIIGQDHIIQTLDNVISSEKIAHA----FLFAGPKGTGKTSTARVFAKALN 63

Query: 80  VNF------------RSTSGPVIA-------KAGDLAALLTNLEDRD------VLFIDEI 114
            +                SG +I           ++  L  N++         +  IDE+
Sbjct: 64  CSHSEVRSQICESCPNQNSGDIIEMDAASNTGVDEIRNLKENVDQLPFESKYKIYIIDEV 123

Query: 115 HRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRF 174
           H LS      L   +E+                    S    I ATT V  +   +  R 
Sbjct: 124 HMLSKSAFNALLKTLEE------------------PPSYVIFILATTDVQKVPITILSRV 165

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
                      + +   ++       ++   EA   IA  S G  R A  +  ++ +F  
Sbjct: 166 Q-SFNFRRISEKQIVAQLENILNKENISFEKEALMLIAQLSSGGLRDALTIAEQISNFEN 224

Query: 235 VAHAKTITREIADAA 249
               K   R+    A
Sbjct: 225 NNITKESVRKNFGIA 239


>gi|325844366|ref|ZP_08168121.1| DNA polymerase III, subunit gamma and tau [Turicibacter sp. HGF1]
 gi|325489171|gb|EGC91554.1| DNA polymerase III, subunit gamma and tau [Turicibacter sp. HGF1]
          Length = 605

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 82/226 (36%), Gaps = 23/226 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+   +  GQV     ++  ++      E L H  LF GP G GKT++A+++A+ +   
Sbjct: 11  RPQKFSDVVGQVHIVRTIQNALK-----HERLSHAYLFCGPRGTGKTSIAKIIAKAVNCV 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDL 136
              T  P           +TN  + DV  ID      +  +  I +++ Y          
Sbjct: 66  NYPTDEPCNECVN--CTTITNGSNSDVFEIDAASNNGVDEIREIRDKVKYAPTMGRYKVY 123

Query: 137 MVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ++ E             ++++        I ATT    +   +  R            ++
Sbjct: 124 IIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKIPPTIISRCQ-RFDFKQISTKE 182

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
           +   +        +   ++A   +A  + G  R A  LL +V  ++
Sbjct: 183 ITQHLSEILTSQNIEFEEDAVQLVAELAEGGMRDALSLLDQVISYS 228


>gi|15791090|ref|NP_280914.1| replication factor C small subunit [Halobacterium sp. NRC-1]
 gi|169236842|ref|YP_001690042.1| replication factor C small subunit [Halobacterium salinarum R1]
 gi|42559530|sp|Q9HN27|RFCS_HALSA RecName: Full=Replication factor C small subunit; Short=RFC small
           subunit; AltName: Full=Clamp loader small subunit
 gi|226739141|sp|B0R7H7|RFCS_HALS3 RecName: Full=Replication factor C small subunit; Short=RFC small
           subunit; AltName: Full=Clamp loader small subunit
 gi|10581691|gb|AAG20394.1| replication factor C small subunit [Halobacterium sp. NRC-1]
 gi|167727908|emb|CAP14696.1| replication factor C small subunit [Halobacterium salinarum R1]
          Length = 322

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 88/246 (35%), Gaps = 36/246 (14%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           +      +++  +   RP  LE+  G  +    L+ +++      + L H+LF GP G G
Sbjct: 1   MTDAAGGRQEIWVEKYRPERLEDVVGHPDITERLQSYVD-----RDDLPHLLFAGPAGTG 55

Query: 67  KTTLAQVVARE-----LGVNFRSTSGP-------VIAKAGDLAALLTNLEDRDVLFIDEI 114
           KT  +  +A+E        NF   +         V  +  D A       +  V+F+DE 
Sbjct: 56  KTASSVSIAKELYGDDWQDNFLELNASDERGIDVVRDRIKDFARSSFGGHNYRVIFLDEA 115

Query: 115 HRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRF 174
             L+   +  L   ME F                   +    I +      + +P+Q R 
Sbjct: 116 DALTDDAQSALRRTMEQFS------------------NNTRFILSCNYSSKIIDPIQSRC 157

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
            +  R      + +   ++  A+  GL  TD+    +   + G  R A   L+      +
Sbjct: 158 AV-FRFAQLGDDAVAAHLREIAETEGLEHTDDGIDALVYAADGDMRRAINALQAASATGD 216

Query: 235 VAHAKT 240
             + +T
Sbjct: 217 SVNEET 222


>gi|50303471|ref|XP_451677.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49640809|emb|CAH02070.1| KLLA0B03234p [Kluyveromyces lactis]
          Length = 804

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 61/282 (21%), Positives = 96/282 (34%), Gaps = 29/282 (10%)

Query: 16  DADISLLR------PR-TLEEFTGQVEACSNLKVFIEA--------AKARAEALDHVLFV 60
           D   S +R      P+   ++  GQ E    +K  I+         AK    A   VL  
Sbjct: 520 DIRPSAMREIFLETPKVYWDDIGGQEELKQKMKEMIQLPLEAAETFAKLGVSAPKGVLLY 579

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DVLFID 112
           GPPG  KT  A+ +A E G+NF +  GP I     G+    +  +  +       ++F D
Sbjct: 580 GPPGCSKTLTAKALATESGINFLAVKGPEIFNKYVGESERAIREIFRKARAASPSIIFFD 639

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           EI  LS   +     +  +  L  ++ E          L    ++AAT R   +   L  
Sbjct: 640 EIDALSPDRDSGSGTSAANHVLTSLLNEIDGVE----ELKGVIIVAATNRPDEIDPALLR 695

Query: 173 --RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
             R    I +     +    I+Q+  K   +         +A  + G       LL +  
Sbjct: 696 PGRLDRHIYVGPPSYDARLQILQKCTKKFNIDTAIVDLKALAECTDGCSGAEVVLLCQEA 755

Query: 231 DFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIA 272
             A +    T  +         LA    G     L Y +  A
Sbjct: 756 GLAAIMEDTTTDKVEQRHFTKALAGISRGITPEMLEYYSAFA 797



 Score = 52.4 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 39/180 (21%), Positives = 67/180 (37%), Gaps = 14/180 (7%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DV 108
           +L  GPPG GKT L + VA E   +  + SGP I           L  +    +     +
Sbjct: 307 ILLHGPPGTGKTMLLRCVANETDAHILTISGPSIVSKYLGETEAALRDIFNEAKRYQPSI 366

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +FIDEI  L+          +E   +  ++              R  ++AAT R   +  
Sbjct: 367 IFIDEIDSLAPNRANDDSGEVESRVVATLLTL----MDGMDGSGRLAVVAATNRPNSIDP 422

Query: 169 PLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
            L+   RF   I ++  ++E    I+++            +  +I+  +  T    G  L
Sbjct: 423 ALRRPGRFDQEIEISIPDVEARHDILRKQFSRMSKQRQLLSPEDISNIASKTHGYVGADL 482


>gi|580855|emb|CAA29958.1| unnamed protein product [Bacillus subtilis subsp. subtilis str.
           168]
          Length = 422

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 58/316 (18%), Positives = 108/316 (34%), Gaps = 36/316 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RP+  E+  GQ      L    + A  + +     LF GP G GKT+ A++ A+
Sbjct: 5   ALYRVFRPQRFEDVVGQEHITKTL----QNALLQKKFSHAYLFSGPRGTGKTSAAKIFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAAL--LTNLEDRDVLFID-----EIHRLSIIVEEILYPAM 129
            +         PV     + AA   +TN    DV+ ID      +  +  I +++ +   
Sbjct: 61  AVNCEH----APVDEPCNECAACKGITNGSISDVIEIDAASNNGVDEIRDIRDKVKFAPS 116

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                  ++ E             ++++        I ATT    +   +  R       
Sbjct: 117 AVTYKVYIIDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLTIISRCQ-RFDF 175

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
                + +   + +      L V + +   IA  + G  R A  LL +   F+     K 
Sbjct: 176 KRITSQAIVGRMNKIVDAEQLQVEEGSLEIIASAADGGMRDALSLLDQAISFSGDI-LKV 234

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
               +   A+ +L I K+     D      +          +  +     +P   IED+I
Sbjct: 235 EDALLITGAVSQLYIGKLAKSLHDKNVSDALET--------LNELLQQGKDPAKLIEDMI 286

Query: 301 EPYMIQQGFIQRTPRG 316
             +  +   + +T  G
Sbjct: 287 FYF--RDMLLYKTAPG 300


>gi|67622295|ref|XP_667804.1| replication factor c subunit 4 [Cryptosporidium hominis TU502]
 gi|54658967|gb|EAL37571.1| replication factor c subunit 4 [Cryptosporidium hominis]
          Length = 327

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 78/225 (34%), Gaps = 38/225 (16%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
            I   RP+ L+E  G  E  + LKV      A+   + ++L  GPPG GKTT    +A E
Sbjct: 6   WIEKYRPKILDEMVGNEEVLTRLKVL-----AKHGNMPNLLLSGPPGTGKTTSIHCLASE 60

Query: 78  L-----GVNFRSTSGPVIAKAGDLAALLTNL---------EDRDVLFIDEIHRLSIIVEE 123
           +     G      +         +   + +              ++ +DE+  ++   ++
Sbjct: 61  MLGSKYGRAVLELNASDDRGIDVVRDKIKSFAREKIDLPEGRHKIVILDEVDSMTDSAQQ 120

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
            L   ME +           + S +  L       A  +   +  P+Q R  I       
Sbjct: 121 ALRRLMEVY-----------SESTRFAL-------ACNQSTKIIEPIQSRCAIIRYSKLT 162

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
           + +  K + +   K+  +   D     +   + G  RI    L+ 
Sbjct: 163 DAQIRKRLFE-IIKMENIPYVDSGIDTLVFTADGDMRIVINNLQA 206


>gi|66359084|ref|XP_626720.1| replication factor C like AAA+ ATpase [Cryptosporidium parvum Iowa
           II]
 gi|46228380|gb|EAK89279.1| replication factor C like AAA+ ATpase [Cryptosporidium parvum Iowa
           II]
          Length = 339

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 78/225 (34%), Gaps = 38/225 (16%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
            I   RP+ L+E  G  E  + LKV      A+   + ++L  GPPG GKTT    +A E
Sbjct: 18  WIEKYRPKILDEMVGNEEVLTRLKVL-----AKHGNMPNLLLSGPPGTGKTTSIHCLASE 72

Query: 78  L-----GVNFRSTSGPVIAKAGDLAALLTNL---------EDRDVLFIDEIHRLSIIVEE 123
           +     G      +         +   + +              ++ +DE+  ++   ++
Sbjct: 73  MLGSKYGRAVLELNASDDRGIDVVRDKIKSFAREKIDLPEGRHKIVILDEVDSMTDSAQQ 132

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
            L   ME +           + S +  L       A  +   +  P+Q R  I       
Sbjct: 133 ALRRLMEVY-----------SESTRFAL-------ACNQSTKIIEPIQSRCAIIRYSKLT 174

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
           + +  K + +   K+  +   D     +   + G  RI    L+ 
Sbjct: 175 DAQIRKRLFE-IIKMENIPYVDSGIDTLVFTADGDMRIVINNLQA 218


>gi|317575745|ref|NP_001187540.1| replication factor C subunit 4 [Ictalurus punctatus]
 gi|308323307|gb|ADO28790.1| replication factor c subunit 4 [Ictalurus punctatus]
          Length = 358

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 50/242 (20%), Positives = 77/242 (31%), Gaps = 45/242 (18%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+ ++E   Q E  + LK  +E A      L ++LF GPPG GKT+     AR
Sbjct: 34  PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGAD-----LPNLLFYGPPGTGKTSTILAAAR 88

Query: 77  E------LGVNFRSTSGP------VIAKAGDLAALLTNLEDRD---------VLFIDEIH 115
           E              +        VI +     A LT    R          ++ +DE  
Sbjct: 89  ELYGPELYRQRVLELNASDERGIQVIREKVKNFAQLTVAGTRTDGKSCPPFKIIILDEAD 148

Query: 116 RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
            ++   +  L   ME             +R+ +  L           V  +  PL  R  
Sbjct: 149 SMTGAAQAALRRTMEK-----------ESRTTRFCL-------ICNYVSRIIEPLTSRCS 190

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
              R      E  +  +        L  + E    +   S G  R A  LL+    F+  
Sbjct: 191 -KFRFKPLTNEVQQERLLEICAKENLKYSKEGIDALVKVSEGDLRKAITLLQSTARFSAE 249

Query: 236 AH 237
             
Sbjct: 250 KE 251


>gi|218549862|ref|YP_002383653.1| DNA polymerase III subunits gamma and tau [Escherichia fergusonii
           ATCC 35469]
 gi|218357403|emb|CAQ90042.1| DNA polymerase III/DNA elongation factor III, tau and gamma
           subunits [Escherichia fergusonii ATCC 35469]
          Length = 643

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 53/306 (17%), Positives = 107/306 (34%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++        + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +A    A   +A  + G+ R A  L     D A  +    ++ +   A
Sbjct: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAIASGDGQVSTQAVSA 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L  D+       L  +  +    G   + +   +A      +A+   +   + +  
Sbjct: 240 MLGTLDDDQA------LSLVEAMVEANGERVMSLINEAAARGIEWEALLVEMLGLLHRIA 293

Query: 309 FIQRTP 314
            +Q +P
Sbjct: 294 MVQLSP 299


>gi|293374915|ref|ZP_06621213.1| DNA polymerase III, subunit gamma and tau [Turicibacter sanguinis
           PC909]
 gi|292646464|gb|EFF64476.1| DNA polymerase III, subunit gamma and tau [Turicibacter sanguinis
           PC909]
          Length = 605

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 82/226 (36%), Gaps = 23/226 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+   +  GQV     ++  ++      E L H  LF GP G GKT++A+++A+ +   
Sbjct: 11  RPQKFSDVVGQVHIVRTIQNALK-----HERLSHAYLFCGPRGTGKTSIAKIIAKAVNCV 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDL 136
              T  P           +TN  + DV  ID      +  +  I +++ Y          
Sbjct: 66  NYPTDEPCNECVN--CTTITNGSNSDVFEIDAASNNGVDEIREIRDKVKYAPTMGRYKVY 123

Query: 137 MVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ++ E             ++++        I ATT    +   +  R            ++
Sbjct: 124 IIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKIPPTIISRCQ-RFDFKQISTKE 182

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
           +   +        +   ++A   +A  + G  R A  LL +V  ++
Sbjct: 183 ITQHLSEILTSQNIEFEEDAVQLVAELAEGGMRDALSLLDQVISYS 228


>gi|145552042|ref|XP_001461697.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124429533|emb|CAK94324.1| unnamed protein product [Paramecium tetraurelia]
          Length = 384

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/253 (17%), Positives = 88/253 (34%), Gaps = 27/253 (10%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
            +   RP+TL+E  G  +    L+     A A+   L +++ VGPPG+GKT+    +AR+
Sbjct: 7   WLEKYRPKTLDEVHGNSDIVDKLR-----AIAKMGNLPNIILVGPPGIGKTSSVLCLARQ 61

Query: 78  -----LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
                +  +    +         +   +     + V   +  H++ I+ E          
Sbjct: 62  ILGDSIKESVLELNASDDRGIETVREQIKGFAQKKVNLQEGQHKIVILDEADSLTEGAQQ 121

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            L +++     + S +  LS             L + +Q R  I       E E    ++
Sbjct: 122 ALRMII--SDYSTSTRFVLS-------CNDSTKLIDAIQSRCCILRFNRLGEKEIRDRLL 172

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           +  ++   +  T +    +   + G  R A   L+     A       + RE        
Sbjct: 173 EIISQE-SVTYTKDGLDALTFTAEGDMRQAINNLQ-----ATFTGFGLVNRENVFKVCDV 226

Query: 253 LAIDKMG--FDQL 263
             +D +    D +
Sbjct: 227 PNVDDLKKILDHM 239


>gi|313114018|ref|ZP_07799572.1| DNA polymerase III, subunit gamma and tau [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310623638|gb|EFQ07039.1| DNA polymerase III, subunit gamma and tau [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 620

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 48/256 (18%), Positives = 84/256 (32%), Gaps = 21/256 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  E+  GQ    + LK  I A +         LF G  G GKTT A++ A+ +    
Sbjct: 10  RPQRFEDVVGQRAIVTALKNQITANRVGHAY----LFTGVRGTGKTTCAKIFAKAVNCLH 65

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P      ++   + N    DV+ +D      +  +  + +E  Y          +
Sbjct: 66  PVNGDP--CGECEICKGIDNGSILDVVEMDAASNNGVDDIRDLRDETAYTPSACKYKVYI 123

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++   +    I ATT +  +   +  R            ED+
Sbjct: 124 IDEVHMLSTAAFNALLKTLEEPPAHVIFILATTEIQKVPATILSRCQRYDFTRI-GPEDI 182

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              V+  A    L ++ + A  IA  + G  R A  +L           A  + R     
Sbjct: 183 ARRVEYIAGEEKLELSPDGAELIARLADGALRDALSILDTCAGVTAKIDADVVRRMAGVT 242

Query: 249 ALLRLAIDKMGFDQLD 264
               L       +  D
Sbjct: 243 DRSYLFRISDALEAQD 258


>gi|302668629|ref|YP_003833077.1| DNA polymerase III gamma and tau subunits DnaX2 [Butyrivibrio
           proteoclasticus B316]
 gi|302397593|gb|ADL36495.1| DNA polymerase III gamma and tau subunits DnaX2 [Butyrivibrio
           proteoclasticus B316]
          Length = 401

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 58/315 (18%), Positives = 111/315 (35%), Gaps = 35/315 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     RP++ +E  GQ    + L+      + + + + H  LF G  G GKTTLA++ A
Sbjct: 5   ALYRKFRPQSFDEVQGQDYIVTALRN-----QVKHDMVSHAYLFHGTRGTGKTTLARIFA 59

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHR-----LSIIVEEILYPAME 130
           R +         P      D      +  D +++ ID         +  I+ E+ YP M+
Sbjct: 60  RAINCENTINGNP--CGECDFCKSYASGSDANIIEIDAASNSKVVDVRRIIAEVSYPPMK 117

Query: 131 DFQLDLMVGE-----GPSARSVKINL-------SRFTLIAATTRVGLLTNPLQDRFGIPI 178
                 ++ E     G    +  I L            I ATT +  +   +  R     
Sbjct: 118 GKWKVYIIDEVHMLYGKRGEAFDILLKTLEEPPPYAVFILATTEMNKVPATILSRCQQYA 177

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
                 I+ ++  ++   +   +   + A   IA  + G+ R A  +L  V     VA+ 
Sbjct: 178 FRRI-SIDIIEQHLRMVTEAERIPAEETALQYIAKVADGSMRDALSILEHVI---FVANG 233

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
           K ++ +IA  +L       +       R    +        + + +           + +
Sbjct: 234 KELSYDIALESLRIDDTKTL------RRMFFALYEKDLHSAIVVLSEKVAQGVDLYQLTN 287

Query: 299 LIEPYMIQQGFIQRT 313
            I  Y+     +Q++
Sbjct: 288 EIIWYLRNLMLLQKS 302


>gi|281177640|dbj|BAI53970.1| DNA polymerase III tau and gamma subunits [Escherichia coli SE15]
          Length = 643

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 53/306 (17%), Positives = 107/306 (34%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++        + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +A    A   +A  + G+ R A  L     D A  +    ++ +   A
Sbjct: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAIASGDGQVSTQGVSA 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L  D+       L  +  +    G   + +   +A      +A+   +   + +  
Sbjct: 240 MLGTLDDDQA------LSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIA 293

Query: 309 FIQRTP 314
            +Q +P
Sbjct: 294 MVQLSP 299


>gi|217073528|gb|ACJ85124.1| unknown [Medicago truncatula]
          Length = 339

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 60/318 (18%), Positives = 101/318 (31%), Gaps = 59/318 (18%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           ++  +      +   RP+ +++   Q E    L   +E       +  H+LF GPPG GK
Sbjct: 1   MAPIIQSTQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETG-----SCPHMLFYGPPGTGK 55

Query: 68  TTLAQVVAR-------------ELGVNFRSTSGPVIAKAGDLAALLTNLED--------- 105
           TT A  +A              EL  +       V  K  D AA+               
Sbjct: 56  TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNKPKNGYPCPP 115

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
             ++ +DE   ++   +  L   ME +                  ++RF  I     +  
Sbjct: 116 YKIIVLDEADSMTEDAQNALRRTMETYS----------------KVTRFFFIC--NYISR 157

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           +  PL  R     R      E + + +    K  G+ +  E    ++  S+G  R A   
Sbjct: 158 IIEPLASRCA-KFRFKPLTEEIMSSRIVYICKEEGIYLDAEGLSTLSNISQGDLRRAITY 216

Query: 226 LRRVRDF-------AEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
           L+             ++     I       ALL+       FD  +      IA    G 
Sbjct: 217 LQSAARLFGSSISSKDLISVSGIVPAEVVEALLKACR-SGNFDLANKEVNNFIAE---GY 272

Query: 279 PV--GIETISAGLSEPRD 294
           PV   +  +   + E  D
Sbjct: 273 PVSQMLTQLFEAIVEEND 290


>gi|146282183|ref|YP_001172336.1| DNA polymerase III subunits gamma and tau [Pseudomonas stutzeri
           A1501]
 gi|145570388|gb|ABP79494.1| DNA polymerase subunits gamma and tau [Pseudomonas stutzeri A1501]
          Length = 687

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 62/328 (18%), Positives = 95/328 (28%), Gaps = 65/328 (19%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPR+  E  GQ      LK  I A     + L H  LF G  G+GKTT+A+++A+ L   
Sbjct: 26  RPRSFREMVGQTHV---LKALINA--LDNQRLHHAYLFTGTRGVGKTTIARIIAKCLNCE 80

Query: 82  FRSTS------------------------GPVIAKAGDLAALLTNLE------DRDVLFI 111
              +S                             K  D   LL N++         V  I
Sbjct: 81  TGVSSTPCGQCSVCREIDEGRFVDLIEVDAASRTKVEDTRELLDNVQYAPSRGRYKVYLI 140

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 141 DEVHMLSSHSFNALLKTLEE------------------PPPHVKFLLATTDPQKLPVTIL 182

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L     E +   +     +  +   ++A   +   + G+ R A  L     D
Sbjct: 183 SRC-LQFSLKNMPPERVVEHLTHVLGVENVPFEEDALWLLGRAADGSMRDAMSL----TD 237

Query: 232 FAEVAHAKTITREIADAAL-LRLAIDKMG-----FDQLDLRYLTMIARNFGGGPVGIETI 285
            A       +      A L         G      +      L  +      GP     +
Sbjct: 238 QAIAFGEGKVLAADVRAMLGTLDHGQVYGVLQALLEGDARALLEAVRHLAEQGPDWAGVL 297

Query: 286 SAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
           +  L+           P  +  G   R 
Sbjct: 298 AEMLNVLHRVAIAQALPEAVDNGQGDRD 325


>gi|330897699|gb|EGH29118.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 232

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 54/245 (22%), Positives = 79/245 (32%), Gaps = 55/245 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPR+  E  GQ      LK  I A    ++ L H  LF G  G+GKTT+A+++A+ L   
Sbjct: 11  RPRSFREMVGQAHV---LKALINA--LDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNCE 65

Query: 82  FRSTS------------------------GPVIAKAGDLAALLTNLE------DRDVLFI 111
              TS                             K  D   LL N++         V  I
Sbjct: 66  TGITSTPCGTCSVCKEIDEGRFVDLIEIDAASRTKVEDTRELLDNVQYAPSRGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         I  TT    L   + 
Sbjct: 126 DEVHMLSSHSFNALLKTLEE------------------PPPYVKFILPTTDPQKLPATIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L     E +   +     +  +   D+A   +   + G+ R A  L  +   
Sbjct: 168 SRC-LQFSLKKMTPERVVEHLTHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAIA 226

Query: 232 FAEVA 236
           F E  
Sbjct: 227 FGEGK 231


>gi|218698618|ref|YP_002406247.1| DNA polymerase III subunits gamma and tau [Escherichia coli IAI39]
 gi|218368604|emb|CAR16341.1| DNA polymerase III/DNA elongation factor III, tau and gamma
           subunits [Escherichia coli IAI39]
          Length = 643

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 53/306 (17%), Positives = 107/306 (34%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++        + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +A    A   +A  + G+ R A  L     D A  +    ++ +   A
Sbjct: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAIASGDGQVSTQAVSA 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L  D+       L  +  +    G   + +   +A      +A+   +   + +  
Sbjct: 240 MLGTLDDDQA------LSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIA 293

Query: 309 FIQRTP 314
            +Q +P
Sbjct: 294 MVQLSP 299


>gi|261341080|ref|ZP_05968938.1| DNA polymerase III subunit tau [Enterobacter cancerogenus ATCC
           35316]
 gi|288316753|gb|EFC55691.1| DNA polymerase III subunit tau [Enterobacter cancerogenus ATCC
           35316]
          Length = 645

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 50/306 (16%), Positives = 106/306 (34%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++   +    + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +     A   +A  + G+ R A  L     D A  +    ++ +    
Sbjct: 184 RAQLEHILDEEKIVHEPRALQLLARAADGSLRDALSL----TDQAIASGDGKLSTDAVST 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L  D+       L  +  +    G   + +   +A      +++   +   + +  
Sbjct: 240 MLGTLDDDQA------LSLIEAMIAANGERVMSLVNEAAARGVEWESLLVEMLGLLHRVA 293

Query: 309 FIQRTP 314
            +Q +P
Sbjct: 294 MLQLSP 299


>gi|138893695|ref|YP_001124148.1| DNA polymerase III subunits gamma and tau [Geobacillus
           thermodenitrificans NG80-2]
 gi|134265208|gb|ABO65403.1| DnaZX [Geobacillus thermodenitrificans NG80-2]
          Length = 559

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 63/330 (19%), Positives = 103/330 (31%), Gaps = 70/330 (21%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RP+   +  GQ      L    ++A  + +     LF GP G GKT+ A++ A+
Sbjct: 5   ALYRVFRPQRFADMVGQEHVTKTL----QSALLQHKISHAYLFSGPRGTGKTSAAKIFAK 60

Query: 77  ELGVNF------------------------RSTSGPVIAKAGDLAALLTNLE------DR 106
            +                                     +  ++  +   ++        
Sbjct: 61  AVNCEHAPAAEPCNECPVCLGITNGTVPDVLEIDAASNNRVDEIRDIREKVKFAPTSVRY 120

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
            V  IDE+H LSI     L   +E+                         I ATT    +
Sbjct: 121 KVYIIDEVHMLSIGAFNALLKTLEE------------------PPKHVIFILATTEPHKI 162

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQR---GAKLTGLAVTDEAACEIAMRSRGTPRIAG 223
              +  R              L  IV R    A   G+  +DEA   IA  + G  R A 
Sbjct: 163 PATIISRCQRFDFRRI----PLSAIVSRLKYVANAQGVEASDEALSAIARAADGGMRDAL 218

Query: 224 RLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIE 283
            LL +   F+           +  AA      D +G   +  +    + + F       E
Sbjct: 219 SLLDQAISFSNGKLEVDDVLSMTGAASFAALADFIG--AIYRKDTAAVLQQF-------E 269

Query: 284 TISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
           T+ A   +P   +EDLI     +   + +T
Sbjct: 270 TMMAQGKDPNRLVEDLILY--CRDLLLYKT 297


>gi|15678268|ref|NP_275383.1| replication factor C large subunit [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|42559321|sp|O26342|RFCL_METTH RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit;
           AltName: Full=mthRFC large subunit
 gi|2621289|gb|AAB84746.1| replication factor C, large subunit [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 479

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 52/256 (20%), Positives = 97/256 (37%), Gaps = 24/256 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           +     RP + +E  G  +  + +K +I+A KA  +    +L VGPPG GKTTLA ++ +
Sbjct: 2   SWTEKYRPGSFDEVVGNQKVIAEIKEWIKAWKA-GKPQKPLLLVGPPGTGKTTLAHIIGK 60

Query: 77  EL------GVNFRSTSGPVIAKAGDLAALLTNL-EDRDVLFIDEIHRLSIIVEEILYPAM 129
           E         + R +   ++  AG+ +A  +    D  ++ +DE+  +            
Sbjct: 61  EFSDTLELNASDRRSQDALMRSAGEASATRSLFNHDLKLIILDEVDGIH---------GN 111

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           ED       G     R +K +      + A          ++ R  +      +    + 
Sbjct: 112 EDRG-----GVQAINRIIKESRHPMV-LTANDPYSKRLQSIKPRCRVLNLRKVHTS-SIA 164

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
             ++R  +  G+   D+   E+A RSRG  R A   L  + +  E    + +     DA 
Sbjct: 165 AALRRICRAEGIECPDDVLRELAKRSRGDLRSAINDLEAMAEGEERIGEELLKMGEKDAT 224

Query: 250 LLRLAIDKMGFDQLDL 265
                  +      D+
Sbjct: 225 SNLFDAVRAVLKSRDV 240


>gi|311112888|ref|YP_003984110.1| DNA polymerase III subunits gamma and tau [Rothia dentocariosa ATCC
           17931]
 gi|310944382|gb|ADP40676.1| DNA polymerase III subunits gamma and tau [Rothia dentocariosa ATCC
           17931]
          Length = 957

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 57/307 (18%), Positives = 96/307 (31%), Gaps = 40/307 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T  E  GQ      L   +   +         LF GP G GKTT A+++AR
Sbjct: 4   ALYRRYRPETFAEVIGQEHVTEPLITALTNNRVNHAY----LFSGPRGCGKTTSARILAR 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR--DVLFID-----EIHRLSIIVEEILYPAM 129
              +N      P      D    L+       DV+ +D      +     + E      +
Sbjct: 60  --CLNCAQGPTPTPCGVCDSCRELSRDGGGSLDVIEMDAASHGGVDHARDLRERATLAPV 117

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            D     ++ E             + V+        I ATT    +   ++ R       
Sbjct: 118 RDRYKIFIIDEAHMVTREGFNALLKIVEEPPEHIKFIFATTEPNKVLGTIRSR-THHYPF 176

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
                E L   +++      + V       +     G+ R +  +L ++     +A A T
Sbjct: 177 RLVPPEVLLPYLEKLCGEENVPVESGVLQLVIRAGGGSVRDSLSILDQL-----IAGANT 231

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV-----GIETISAGLSEPRDA 295
            +    D A+  L            + L  +   F           +  + A   +PR  
Sbjct: 232 ESGISYDRAVALLGY-------THAQLLDNVIDAFSAQDAPSLFEAVSRVVATGQDPRRF 284

Query: 296 IEDLIEP 302
           +EDL+E 
Sbjct: 285 VEDLLER 291


>gi|320529756|ref|ZP_08030834.1| DNA polymerase III, subunit gamma and tau [Selenomonas artemidis
           F0399]
 gi|320137995|gb|EFW29899.1| DNA polymerase III, subunit gamma and tau [Selenomonas artemidis
           F0399]
          Length = 617

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 51/251 (20%), Positives = 93/251 (37%), Gaps = 29/251 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP +  +  GQ      L   + + +         LF GP G GKT+ A+++AR L    
Sbjct: 11  RPTSFADLVGQEHISRTLSRAVTSGQTSHAY----LFTGPRGTGKTSTAKILARSLNC-- 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDR--DVLFID-----EIHRLSIIVEEILYPAMEDFQLD 135
               GP +   G   +     E    DV  ID      I  +  + E + +   E     
Sbjct: 65  --AQGPTLTPCGQCESCRAIAEGSSMDVFEIDAASNRGIDEIRDLRETVKFAPTEGRCKI 122

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             ++++        I ATT    +   +Q R       +   + 
Sbjct: 123 YIIDEVHMLTTEAFNALLKTLEEPPPSVLFILATTEPHKVPATIQSRCQ-RYDFHRITVA 181

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +++  +    + +G+A  D+A   IA ++ G  R A  +L +    AE     T+T E  
Sbjct: 182 EIRERLSYVCRESGIAANDDALAIIAAQADGGMRDALSILDQCSALAE----GTLTAEQV 237

Query: 247 DAALLRLAIDK 257
             +L  +  ++
Sbjct: 238 QESLGLVGKER 248


>gi|167750681|ref|ZP_02422808.1| hypothetical protein EUBSIR_01658 [Eubacterium siraeum DSM 15702]
 gi|167656360|gb|EDS00490.1| hypothetical protein EUBSIR_01658 [Eubacterium siraeum DSM 15702]
          Length = 743

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 89/249 (35%), Gaps = 22/249 (8%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     R  T +E   Q    + LK  I+A           LF G  G GKTT A+++A+
Sbjct: 4   ALYRKYRSATFDEVISQEHITTTLKNQIKA----GTPAHAYLFTGSRGTGKTTCAKLMAK 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +         P   +     A+       D++ +D      +  +  + +E++Y     
Sbjct: 60  AVNCLSPVDGNP-CGECESCKAI--AAGCPDIIEMDAASNNGVDDVRALRDEVMYAPTVC 116

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT +  +   +  R     R + 
Sbjct: 117 RYKVYIIDEVHMLSSQAFNALLKTIEEPPPHVIFILATTEIHKVPATIASRCQ-QFRFSR 175

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            ++E+    +   AK   + +T++AA  I+  S G  R A  LL +    +     +T+ 
Sbjct: 176 IDVEESTKRLCEIAKKENVNITEDAARLISRLSDGGMRDAVSLLDQCISVSADIDEETVR 235

Query: 243 REIADAALL 251
                A   
Sbjct: 236 TTAGIAGTE 244


>gi|221195173|ref|ZP_03568229.1| DNA polymerase III subunit gamma/tau [Atopobium rimae ATCC 49626]
 gi|221185076|gb|EEE17467.1| DNA polymerase III subunit gamma/tau [Atopobium rimae ATCC 49626]
          Length = 723

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 86/234 (36%), Gaps = 22/234 (9%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           ++  +  RP+T E+  GQ      LK  +   K         LF GP G GKTT+A+++A
Sbjct: 2   ESLYTKYRPQTFEQVVGQKHVVGTLKRAVLEGKVSHAY----LFCGPRGTGKTTMARLLA 57

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL--SIIVEEIL----YPAM 129
           +   +  R   G +     +   L+      DV+ ID         + EEI+    Y  +
Sbjct: 58  KA--LLCRKAPGQLPDGTCEECQLIAAGNHPDVVEIDAASNTGVDNVREEIISRANYAPV 115

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                  ++ E             ++++   +  T I  TT    +   +  R       
Sbjct: 116 RGKGKVYIIDEVHMLTTAAFNALLKTLEEPPAHVTFILCTTDPQKVLGTVLSRVQ-RFDF 174

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
           +    E++ + +Q+  +         A   I   +RG  R A   L ++  F +
Sbjct: 175 HAIGNEEMLSHLQQVCEAESFQYDARALELIVRHARGGMRDALTSLEQLSVFGD 228


>gi|199599027|ref|ZP_03212434.1| DNA polymerase III, gamma/tau subunit [Lactobacillus rhamnosus
           HN001]
 gi|199590063|gb|EDY98162.1| DNA polymerase III, gamma/tau subunit [Lactobacillus rhamnosus
           HN001]
          Length = 565

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 58/295 (19%), Positives = 103/295 (34%), Gaps = 32/295 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  ++  GQ      LK     A    +     LF GP G GKT++A+++A+ L    
Sbjct: 11  RPQQFKDVIGQDAITKTLK----NALITGQTSHAYLFTGPRGTGKTSVAKILAKALNCLH 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P      ++   + +    DV+ ID      +  +  I ++  Y          +
Sbjct: 67  LEDGEPDNTC--EICQAINDGSLTDVIEIDAASNNGVDEIRDIRDKAKYAPTRARVKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++   +    I ATT    +   +  R            ED+
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPAHVVFILATTEPHKIPATIISRTQ-RFDFRRITPEDI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              ++       +   D A   IA  + G  R A  +L +V  F        +T E A  
Sbjct: 184 VKRMRFILDDKQITYDDAALKVIAKAAEGGMRDALSILDQVLSF----GDNHVTTEDALD 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTM-IARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
               +    +G      +YL   +A++       +E + A   +    IEDLIE 
Sbjct: 240 VTGGVTTAVLG------KYLAAVLAKDHAQALKMVEDLLAAGKDAGRLIEDLIEY 288


>gi|225459625|ref|XP_002285874.1| PREDICTED: hypothetical protein isoform 1 [Vitis vinifera]
 gi|302141781|emb|CBI18984.3| unnamed protein product [Vitis vinifera]
          Length = 341

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 61/302 (20%), Positives = 99/302 (32%), Gaps = 57/302 (18%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           ++  +      +   RP+ +++   Q E    L   +E          H+LF GPPG GK
Sbjct: 1   MAPVLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLE-----TTNCPHMLFYGPPGTGK 55

Query: 68  TTLAQVVAR-------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------- 106
           TT A  +A              EL  +       V  K  D AA+      R        
Sbjct: 56  TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSGHRQGGYPCPP 115

Query: 107 -DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
             ++ +DE   ++   +  L   ME +                  ++RF  I     +  
Sbjct: 116 YKIIILDEADSMTEDAQNALRRTMETYS----------------KVTRFFFIC--NYISR 157

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           +  PL  R     R      E + + +    K   L +  EA   ++  S+G  R A   
Sbjct: 158 IIEPLASRCA-KFRFKPLSEEIMSSRILHICKEEELNLDSEALSTLSSISQGDLRRAITY 216

Query: 226 LR-RVRDFAEVAHAKT------ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
           L+   R F  +  +K       +  +    AL         FD  +     +IA    G 
Sbjct: 217 LQGAARLFGSIISSKDLISVSGVVPQHVVQALFAAC-KSGDFDSANKEVNNVIAE---GY 272

Query: 279 PV 280
           PV
Sbjct: 273 PV 274


>gi|325498242|gb|EGC96101.1| DNA polymerase III subunits gamma and tau [Escherichia fergusonii
           ECD227]
          Length = 643

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 53/306 (17%), Positives = 107/306 (34%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++        + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +A    A   +A  + G+ R A  L     D A  +    ++ +   A
Sbjct: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAIASGDGQVSTQAVSA 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L  D+       L  +  +    G   + +   +A      +A+   +   + +  
Sbjct: 240 MLGTLDDDQA------LSLVEAMVEANGERVMSLINEAAARGIEWEALLVEMLGLLHRIA 293

Query: 309 FIQRTP 314
            +Q +P
Sbjct: 294 MVQLSP 299


>gi|324114695|gb|EGC08663.1| DNA polymerase III [Escherichia fergusonii B253]
          Length = 643

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 53/306 (17%), Positives = 107/306 (34%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++        + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +A    A   +A  + G+ R A  L     D A  +    ++ +   A
Sbjct: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAIASGDGQVSTQAVSA 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L  D+       L  +  +    G   + +   +A      +A+   +   + +  
Sbjct: 240 MLGTLDDDQA------LSLVEAMVEANGERVMSLINEAAARGIEWEALLVEMLGLLHRIA 293

Query: 309 FIQRTP 314
            +Q +P
Sbjct: 294 MVQLSP 299


>gi|269138376|ref|YP_003295076.1| DNA polymerase III, subunits gamma and tau [Edwardsiella tarda
           EIB202]
 gi|267984036|gb|ACY83865.1| DNA polymerase III, subunits gamma and tau [Edwardsiella tarda
           EIB202]
 gi|304558406|gb|ADM41070.1| DNA polymerase III subunits gamma and tau [Edwardsiella tarda
           FL6-60]
          Length = 689

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 61/323 (18%), Positives = 105/323 (32%), Gaps = 37/323 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 48  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 101

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D+L ID   R  +     L       PA   F++ L
Sbjct: 102 ETGITATPCGVCDNCREIEQGRFVDLLEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 161

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++        + ATT    L   +  R  +   L   + E +
Sbjct: 162 IDEVHMLSRHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSRC-LQFHLRALDHEQI 220

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  +++ A    L     A   +A  + G+ R A  L     D A       IT +    
Sbjct: 221 RAQLEKIAHAEALTAEPRALQLLARAAEGSMRDALSL----TDQAIAMGQGQITADAVSQ 276

Query: 249 ALLRLAIDK-----MGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI--- 300
            L  L  ++           D   +        G  V  E +   L E    +  +    
Sbjct: 277 MLGTLDDEQPLALIEALTAADGTLVMARVEQAAGRGVDWENL---LVEMLALLHRVAMLQ 333

Query: 301 -EPYMIQQGFIQRTPRGRLLMPI 322
             P  +   F    PR R L  +
Sbjct: 334 LLPSALDSQFAAVEPRLRELARM 356


>gi|218553036|ref|YP_002385949.1| DNA polymerase III subunits gamma and tau [Escherichia coli IAI1]
 gi|218359804|emb|CAQ97345.1| DNA polymerase III/DNA elongation factor III, tau and gamma
           subunits [Escherichia coli IAI1]
          Length = 643

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 53/306 (17%), Positives = 107/306 (34%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++        + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +A    A   +A  + G+ R A  L     D A  +    ++ +   A
Sbjct: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAIASGDGQVSTQAVSA 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L  D+       L  +  +    G   + +   +A      +A+   +   + +  
Sbjct: 240 MLGTLDDDQA------LSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIA 293

Query: 309 FIQRTP 314
            +Q +P
Sbjct: 294 MVQLSP 299


>gi|24111853|ref|NP_706363.1| DNA polymerase III subunits gamma and tau [Shigella flexneri 2a
           str. 301]
 gi|30061970|ref|NP_836141.1| DNA polymerase III subunits gamma and tau [Shigella flexneri 2a
           str. 2457T]
 gi|110804497|ref|YP_688017.1| DNA polymerase III subunits gamma and tau [Shigella flexneri 5 str.
           8401]
 gi|24050648|gb|AAN42070.1| DNA polymerase III, tau and gamma subunits; DNA elongation factor
           III [Shigella flexneri 2a str. 301]
 gi|30040214|gb|AAP15947.1| DNA polymerase III, tau and gamma subunits; DNA elongation factor
           III [Shigella flexneri 2a str. 2457T]
 gi|110614045|gb|ABF02712.1| DNA polymerase III, tau and gamma subunits [Shigella flexneri 5
           str. 8401]
 gi|281599809|gb|ADA72793.1| DNA polymerase III, tau and gamma subunits [Shigella flexneri
           2002017]
 gi|313646900|gb|EFS11357.1| DNA polymerase III, subunits gamma and tau [Shigella flexneri 2a
           str. 2457T]
 gi|332760763|gb|EGJ91051.1| DNA polymerase III, subunits gamma and tau [Shigella flexneri
           4343-70]
 gi|332768395|gb|EGJ98579.1| DNA polymerase III, subunits gamma and tau [Shigella flexneri
           2930-71]
          Length = 641

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 53/306 (17%), Positives = 107/306 (34%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++        + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +A    A   +A  + G+ R A  L     D A  +    ++ +   A
Sbjct: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAIASGDGQVSTQAVSA 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L  D+       L  +  +    G   + +   +A      +A+   +   + +  
Sbjct: 240 MLGTLDDDQA------LSLVEAMVEGNGERVMALINEAAARGIEWEALLVEMLGLLHRIA 293

Query: 309 FIQRTP 314
            +Q +P
Sbjct: 294 MVQLSP 299


>gi|309358101|emb|CAP34442.2| CBR-RFC-4.1 protein [Caenorhabditis briggsae AF16]
          Length = 340

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/273 (16%), Positives = 90/273 (32%), Gaps = 42/273 (15%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M +   + S    +        RP+TL++   Q E  + LK  ++      + L H+LF 
Sbjct: 1   MSEAREVDSSKKQKVLTWTEKYRPKTLDDIAHQEEVVTMLKGALQ-----GKDLPHLLFY 55

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAAL------LTNLEDRD------- 107
           GPPG GKT+ A    R+L  +       +   A D   +      +              
Sbjct: 56  GPPGTGKTSTALAFCRQLFPSSIFRDRVLDLNASDERGISVVRQKIQAFSKTTLGSSNKE 115

Query: 108 ------VLFIDEIHRLSIIVEEILYPAMEDFQLD--LMVGEGPSARSVKINLSRFTLIAA 159
                 ++ +DE+  ++   +  +   +EDF      ++     +R +   +SR      
Sbjct: 116 DVLRLKIIILDEVDAMTREAQAAMRRVIEDFSKTTRFILICNYVSRLIPPVVSRCAKFRF 175

Query: 160 TTRVGLLT-NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGT 218
            +    +    L+              ++LK +++                    R+  T
Sbjct: 176 KSLPAEVQVQRLRTICDAEGTPM--SEDELKQVMEYSEGDL-------------RRAVCT 220

Query: 219 PRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
            +    +L+ V        A+      +  ALL
Sbjct: 221 LQSLAPILKNVSYIPGDESARNCYLRGSSDALL 253


>gi|300930225|ref|ZP_07145639.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS
           187-1]
 gi|300461880|gb|EFK25373.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS
           187-1]
          Length = 643

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 53/306 (17%), Positives = 107/306 (34%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++        + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +A    A   +A  + G+ R A  L     D A  +    ++ +   A
Sbjct: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAIASGDGQVSTQAVSA 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L  D+       L  +  +    G   + +   +A      +A+   +   + +  
Sbjct: 240 MLGTLDDDQA------LSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIA 293

Query: 309 FIQRTP 314
            +Q +P
Sbjct: 294 MVQLSP 299


>gi|196251181|ref|ZP_03149856.1| DNA polymerase III, subunits gamma and tau [Geobacillus sp.
           G11MC16]
 gi|196209307|gb|EDY04091.1| DNA polymerase III, subunits gamma and tau [Geobacillus sp.
           G11MC16]
          Length = 559

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 63/330 (19%), Positives = 103/330 (31%), Gaps = 70/330 (21%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RP+   +  GQ      L    ++A  + +     LF GP G GKT+ A++ A+
Sbjct: 5   ALYRVFRPQRFADMVGQEHVTKTL----QSALLQHKISHAYLFSGPRGTGKTSAAKIFAK 60

Query: 77  ELGVNF------------------------RSTSGPVIAKAGDLAALLTNLE------DR 106
            +                                     +  ++  +   ++        
Sbjct: 61  AVNCEHAPAAEPCNECPVCLGITNGMVPDVLEIDAASNNRVDEIRDIREKVKFAPTSVRY 120

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
            V  IDE+H LSI     L   +E+                         I ATT    +
Sbjct: 121 KVYIIDEVHMLSIGAFNALLKTLEE------------------PPKHVIFILATTEPHKI 162

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQR---GAKLTGLAVTDEAACEIAMRSRGTPRIAG 223
              +  R              L  IV R    A   G+  +DEA   IA  + G  R A 
Sbjct: 163 PATIISRCQRFDFRRI----PLSAIVSRLKYVANAQGVEASDEALSAIARAADGGMRDAL 218

Query: 224 RLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIE 283
            LL +   F+           +  AA      D +G   +  +    + + F       E
Sbjct: 219 SLLDQAISFSNGKLEVDDVLSMTGAASFAALADFIG--AIYRKDTAAVLQQF-------E 269

Query: 284 TISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
           T+ A   +P   +EDLI     +   + +T
Sbjct: 270 TMMAQGKDPNRLVEDLILY--CRDLLLYKT 297


>gi|108761627|ref|YP_630176.1| DNA polymerase III subunits gamma and tau, truncated [Myxococcus
           xanthus DK 1622]
 gi|108465507|gb|ABF90692.1| DNA polymerase III, gamma and tau subunits, truncated [Myxococcus
           xanthus DK 1622]
          Length = 402

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 57/288 (19%), Positives = 98/288 (34%), Gaps = 32/288 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  ++ TGQ      +   I+  +         LF GP G+GKTT A+++A+ L    
Sbjct: 11  RPQKFDDMTGQEHVVRTVANAIKIDRVAHAY----LFCGPRGVGKTTAARLLAKALNCEK 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDR--DVLFID-----EIHRLSIIVEEILYPAMEDFQLD 135
               GP     G+  A          DV  ID      +  +  I E   Y    D    
Sbjct: 67  ----GPTAQPCGECRACTEIAAGTSVDVAEIDGASNNGVENVREIRENAKYLPQRDRHKI 122

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             ++++        I ATT    L + +  R             
Sbjct: 123 YIIDEVHMLSGAAFNALLKTLEEPPGHVKFIFATTEAHKLPDTILSRCQ-RHNFRRIPAA 181

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE-- 244
            +   +Q   K  G  ++D +   +  +S G  R A  LL +V        +     +  
Sbjct: 182 RMLQRLQEICKAEGAGISDRSLSLVVRQSEGGMRDALSLLDQVLASCGATPSDEEVADAL 241

Query: 245 -IADAALLRLAIDKMGFDQLD-LRYLTMIARNFGGGPVGIETISAGLS 290
              D  L++   D       D  R L  +   F  G + ++ ++  L+
Sbjct: 242 GAIDRTLVQDFAD--ALVHKDAKRVLERVEEVFNRG-LDLKRLAEELA 286


>gi|323164275|gb|EFZ50082.1| DNA polymerase III, subunits gamma and tau [Shigella sonnei 53G]
          Length = 481

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 53/306 (17%), Positives = 107/306 (34%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++        + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +A    A   +A  + G+ R A  L     D A  +    ++ +   A
Sbjct: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAIASGDGQVSTQAVSA 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L  D+       L  +  +    G   + +   +A      +A+   +   + +  
Sbjct: 240 MLGTLDDDQA------LSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIA 293

Query: 309 FIQRTP 314
            +Q +P
Sbjct: 294 MVQLSP 299


>gi|307717574|gb|ADN88840.1| recombination factor protein [Listeria ivanovii subsp.
           londoniensis]
 gi|307717578|gb|ADN88842.1| recombination factor protein [Listeria ivanovii subsp.
           londoniensis]
 gi|307717580|gb|ADN88843.1| recombination factor protein [Listeria ivanovii subsp.
           londoniensis]
          Length = 191

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/202 (21%), Positives = 81/202 (40%), Gaps = 17/202 (8%)

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           G+GKT++A  +A      FR+ +     K   ++ A    +    +L +DE+HRL  + +
Sbjct: 1   GIGKTSIASAIAGSTKYAFRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKVKQ 60

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           + L P +E   + +++G   S   + IN +    I + T++  L     +   I +    
Sbjct: 61  DFLLPLLESGAI-ILIGATTSNPYIAINPA----IRSRTQIFELKPLTVEDIMITMDRAL 115

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT-- 240
            + +       RG     + +   A    A  S G  R A   L      +E        
Sbjct: 116 ADKD-------RGLGNYQVEINALAKKHFATASNGDVRSALNALELAVISSESDEDGIVR 168

Query: 241 ITREIADAALLRL--AIDKMGF 260
           +T ++A+  L +   A DK G 
Sbjct: 169 VTLDVAEECLQKKSLAHDKDGD 190


>gi|290981375|ref|XP_002673406.1| predicted protein [Naegleria gruberi]
 gi|284086989|gb|EFC40662.1| predicted protein [Naegleria gruberi]
          Length = 345

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 53/246 (21%), Positives = 85/246 (34%), Gaps = 48/246 (19%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           N   +       RP+T+++   Q E  S LK  +E        L H+LF GPPG GKT+ 
Sbjct: 2   NQKSQQPWTEKYRPKTVDDVVHQEEVVSALKKSLE-----VGNLPHLLFYGPPGNGKTST 56

Query: 71  AQVVAR-------------ELGVNFRSTSGPVIAKAGDLA--ALLTNLEDR--------D 107
           A  +A+             EL  +       +  K    A  A+  N   +         
Sbjct: 57  ATAIAKQLFGPELYKTRVLELNASDERGINVIRTKVKTFAQTAVSENPTGKGKYPCPPFK 116

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           ++ +DE   +++  +  L   ME +                 N++RF        V  + 
Sbjct: 117 IIILDEADSMTVDAQSALRRTMETYS----------------NVTRF--CLICNYVSRII 158

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLA-VTDEAACEIAMRSRGTPRIAGRLL 226
           +P+  R     R    E   LK  +Q  A   G+    ++    I   S G  R A   L
Sbjct: 159 DPITSRCA-KFRFKPLEYSLLKERLQYIANQEGITLKDEKVLDTIVGHSEGDLRKAITTL 217

Query: 227 RRVRDF 232
           +     
Sbjct: 218 QSASRM 223


>gi|254525893|ref|ZP_05137945.1| DNA polymerase, gamma and tau subunit [Prochlorococcus marinus str.
           MIT 9202]
 gi|221537317|gb|EEE39770.1| DNA polymerase, gamma and tau subunit [Prochlorococcus marinus str.
           MIT 9202]
          Length = 586

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 81/226 (35%), Gaps = 19/226 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP  L+E  GQ        + ++ A    +     LF GP G GKT+ A++ A+ L    
Sbjct: 13  RPNNLDELVGQKFI----SITLKEALLTKKIAPAYLFNGPRGTGKTSSARIFAKSLNCLA 68

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                       DL   +T+    D++ ID      +  +  I+E   +   +      +
Sbjct: 69  FDKPTINPCCKCDLCRQITDGNALDIIEIDAASNTGVENIREIIERARFAPTQARWKVYV 128

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++   SR   I ATT    + N +Q R             D+
Sbjct: 129 IDECHMLSTAASNALLKTIEEPPSRVIFILATTNPERVLNTIQSRCQ-KFDFRRISPGDI 187

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
              +   A+   +    +A   IA RS G  R A  L  ++    E
Sbjct: 188 FQHLTEIAEKESIEYEVQALKMIAKRSNGGMRDAQSLFEQLNLLPE 233


>gi|82775799|ref|YP_402146.1| DNA polymerase III subunits gamma and tau [Shigella dysenteriae
           Sd197]
 gi|309786053|ref|ZP_07680682.1| DNA polymerase III, subunits gamma and tau [Shigella dysenteriae
           1617]
 gi|81239947|gb|ABB60657.1| DNA polymerase III, tau and gamma subunits [Shigella dysenteriae
           Sd197]
 gi|308926164|gb|EFP71642.1| DNA polymerase III, subunits gamma and tau [Shigella dysenteriae
           1617]
          Length = 643

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 53/306 (17%), Positives = 107/306 (34%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++        + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +A    A   +A  + G+ R A  L     D A  +    ++ +   A
Sbjct: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAIASGDGQVSTQAVSA 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L  D+       L  +  +    G   + +   +A      +A+   +   + +  
Sbjct: 240 MLGTLDDDQA------LSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIA 293

Query: 309 FIQRTP 314
            +Q +P
Sbjct: 294 MVQLSP 299


>gi|26246484|ref|NP_752523.1| DNA polymerase III subunits gamma and tau [Escherichia coli CFT073]
 gi|91209543|ref|YP_539529.1| DNA polymerase III subunits gamma and tau [Escherichia coli UTI89]
 gi|117622727|ref|YP_851640.1| DNA polymerase III subunits gamma and tau [Escherichia coli APEC
           O1]
 gi|170681602|ref|YP_001742614.1| DNA polymerase III subunits gamma and tau [Escherichia coli
           SMS-3-5]
 gi|218557380|ref|YP_002390293.1| DNA polymerase III subunits gamma and tau [Escherichia coli S88]
 gi|218688333|ref|YP_002396545.1| DNA polymerase III subunits gamma and tau [Escherichia coli ED1a]
 gi|227884517|ref|ZP_04002322.1| DNA polymerase III subunits gamma and tau [Escherichia coli 83972]
 gi|293408619|ref|ZP_06652458.1| DNA polymerase III [Escherichia coli B354]
 gi|300919875|ref|ZP_07136342.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS
           115-1]
 gi|300935752|ref|ZP_07150717.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS
           21-1]
 gi|301022523|ref|ZP_07186397.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS
           69-1]
 gi|301049679|ref|ZP_07196627.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS
           185-1]
 gi|306813063|ref|ZP_07447256.1| DNA polymerase III subunits gamma and tau [Escherichia coli NC101]
 gi|331656528|ref|ZP_08357490.1| DNA polymerase III subunit tau [Escherichia coli TA206]
 gi|26106882|gb|AAN79067.1|AE016756_250 DNA polymerase III subunit tau [Escherichia coli CFT073]
 gi|91071117|gb|ABE05998.1| DNA polymerase III subunit tau [Escherichia coli UTI89]
 gi|115511851|gb|ABI99925.1| DNA polymerase III subunits gamma and tau [Escherichia coli APEC
           O1]
 gi|170519320|gb|ACB17498.1| DNA polymerase III, tau subunit [Escherichia coli SMS-3-5]
 gi|218364149|emb|CAR01814.1| DNA polymerase III/DNA elongation factor III, tau and gamma
           subunits [Escherichia coli S88]
 gi|218425897|emb|CAR06703.1| DNA polymerase III/DNA elongation factor III, tau and gamma
           subunits [Escherichia coli ED1a]
 gi|222032264|emb|CAP75003.1| DNA polymerase III subunit tau [Escherichia coli LF82]
 gi|227838603|gb|EEJ49069.1| DNA polymerase III subunits gamma and tau [Escherichia coli 83972]
 gi|284920279|emb|CBG33338.1| DNA polymerase III subunits gamma and tau [Escherichia coli 042]
 gi|291471797|gb|EFF14280.1| DNA polymerase III [Escherichia coli B354]
 gi|294489591|gb|ADE88347.1| DNA polymerase III, tau subunit [Escherichia coli IHE3034]
 gi|300298572|gb|EFJ54957.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS
           185-1]
 gi|300397484|gb|EFJ81022.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS
           69-1]
 gi|300413091|gb|EFJ96401.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS
           115-1]
 gi|300459052|gb|EFK22545.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS
           21-1]
 gi|305853826|gb|EFM54265.1| DNA polymerase III subunits gamma and tau [Escherichia coli NC101]
 gi|307552376|gb|ADN45151.1| DNA polymerase III subunit tau [Escherichia coli ABU 83972]
 gi|307628061|gb|ADN72365.1| DNA polymerase III subunits gamma and tau [Escherichia coli UM146]
 gi|312945047|gb|ADR25874.1| DNA polymerase III subunits gamma and tau [Escherichia coli O83:H1
           str. NRG 857C]
 gi|315289907|gb|EFU49297.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS
           110-3]
 gi|315294238|gb|EFU53589.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS
           153-1]
 gi|315298000|gb|EFU57270.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS
           16-3]
 gi|323952919|gb|EGB48787.1| DNA polymerase III [Escherichia coli H252]
 gi|331054776|gb|EGI26785.1| DNA polymerase III subunit tau [Escherichia coli TA206]
          Length = 643

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 53/306 (17%), Positives = 107/306 (34%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++        + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +A    A   +A  + G+ R A  L     D A  +    ++ +   A
Sbjct: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAIASGDGQVSTQAVSA 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L  D+       L  +  +    G   + +   +A      +A+   +   + +  
Sbjct: 240 MLGTLDDDQA------LSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIA 293

Query: 309 FIQRTP 314
            +Q +P
Sbjct: 294 MVQLSP 299


>gi|323509483|dbj|BAJ77634.1| cgd3_1450 [Cryptosporidium parvum]
          Length = 327

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 78/225 (34%), Gaps = 38/225 (16%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
            I   RP+ L+E  G  E  + LKV      A+   + ++L  GPPG GKTT    +A E
Sbjct: 6   WIEKYRPKILDEMVGNEEVLTRLKVL-----AKHGNMPNLLLSGPPGTGKTTSIHCLASE 60

Query: 78  L-----GVNFRSTSGPVIAKAGDLAALLTNL---------EDRDVLFIDEIHRLSIIVEE 123
           +     G      +         +   + +              ++ +DE+  ++   ++
Sbjct: 61  MLGSKYGRAVLELNASDDRGIDVVRDKIKSFAREKIDLPEGRHKIVILDEVDSMTDSAQQ 120

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
            L   ME +           + S +  L       A  +   +  P+Q R  I       
Sbjct: 121 ALRRLMEVY-----------SESTRFAL-------ACNQSTKIIEPIQSRCAIIRYSKLT 162

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
           + +  K + +   K+  +   D     +   + G  RI    L+ 
Sbjct: 163 DAQIRKRLFE-IIKMENIPYVDSGIDTLVFTADGDMRIVINNLQA 206


>gi|331645656|ref|ZP_08346759.1| DNA polymerase III subunit tau [Escherichia coli M605]
 gi|331044408|gb|EGI16535.1| DNA polymerase III subunit tau [Escherichia coli M605]
          Length = 643

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 53/306 (17%), Positives = 107/306 (34%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++        + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +A    A   +A  + G+ R A  L     D A  +    ++ +   A
Sbjct: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAIASGDGQVSTQAVSA 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L  D+       L  +  +    G   + +   +A      +A+   +   + +  
Sbjct: 240 MLGTLDDDQA------LSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIA 293

Query: 309 FIQRTP 314
            +Q +P
Sbjct: 294 MVQLSP 299


>gi|88703365|ref|ZP_01101081.1| conserved hypothetical protein [Congregibacter litoralis KT71]
 gi|88702079|gb|EAQ99182.1| conserved hypothetical protein [Congregibacter litoralis KT71]
          Length = 126

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/94 (29%), Positives = 38/94 (40%), Gaps = 7/94 (7%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP    E  GQ     + K    A   R E L  ++  GPPG+GKTTLAQ++    G   
Sbjct: 20  RPTAAIEVVGQSHLLGDGKPL--ARCLRGEPLHSMILWGPPGVGKTTLAQLLCDASGSRM 77

Query: 83  RSTSG-----PVIAKAGDLAALLTNLEDRDVLFI 111
              S        I +A  +         + VLF+
Sbjct: 78  VKLSAVMDGVKAIREAVSVGEAERGAGRQCVLFV 111


>gi|327480432|gb|AEA83742.1| DNA polymerase III subunits gamma and tau [Pseudomonas stutzeri DSM
           4166]
          Length = 672

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 62/328 (18%), Positives = 95/328 (28%), Gaps = 65/328 (19%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPR+  E  GQ      LK  I A     + L H  LF G  G+GKTT+A+++A+ L   
Sbjct: 11  RPRSFREMVGQTHV---LKALINA--LDNQRLHHAYLFTGTRGVGKTTIARIIAKCLNCE 65

Query: 82  FRSTS------------------------GPVIAKAGDLAALLTNLE------DRDVLFI 111
              +S                             K  D   LL N++         V  I
Sbjct: 66  TGVSSTPCGQCSVCREIDEGRFVDLIEVDAASRTKVEDTRELLDNVQYAPSRGRYKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSSHSFNALLKTLEE------------------PPPHVKFLLATTDPQKLPVTIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L     E +   +     +  +   ++A   +   + G+ R A  L     D
Sbjct: 168 SRC-LQFSLKNMPPERVVEHLTHVLGVENVPFEEDALWLLGRAADGSMRDAMSL----TD 222

Query: 232 FAEVAHAKTITREIADAAL-LRLAIDKMG-----FDQLDLRYLTMIARNFGGGPVGIETI 285
            A       +      A L         G      +      L  +      GP     +
Sbjct: 223 QAIAFGEGKVLAADVRAMLGTLDHGQVYGVLQALLEGDARALLEAVRHLAEQGPDWAGVL 282

Query: 286 SAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
           +  L+           P  +  G   R 
Sbjct: 283 AEMLNVLHRVAIAQALPEAVDNGQGDRD 310


>gi|326693436|ref|ZP_08230441.1| DNA polymerase III subunits gamma and tau [Leuconostoc argentinum
           KCTC 3773]
          Length = 589

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 81/233 (34%), Gaps = 40/233 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RPRT ++  GQ      LK  IE  +         LF GP G GKT+ A++ AR
Sbjct: 5   ALYRVYRPRTFDDMIGQEVITQTLKNAIETEQTGHAY----LFSGPRGTGKTSAAKIFAR 60

Query: 77  ELG-----------VNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSI 119
           E+             +         ++  D+  +L N++         V  IDE+H LS 
Sbjct: 61  EVNGIDPQTDDAQIPDIVEFDAASNSRVEDMRDILANVDYAPIEAKYKVYIIDEVHMLSN 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
                L   +E+                    +    I ATT    +   +  R      
Sbjct: 121 SAFNALLKTLEE------------------PPANVKFILATTEPQKVPVTILSRTQRFEF 162

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
                 + ++  +        +A  D+A   IA  + G  R A  +L +V  +
Sbjct: 163 KRIAT-DVIQARLADILTQRDVAYDDDALRIIANVAEGGMRDALSILDQVMAY 214


>gi|268576128|ref|XP_002643044.1| Hypothetical protein CBG22959 [Caenorhabditis briggsae]
          Length = 353

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 70/212 (33%), Gaps = 31/212 (14%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L S  V      +   RP  L E     +    L  FIE        L H+LF GPPG G
Sbjct: 2   LPSTTVVSNLPWVEKYRPSKLNELVAHEQVVKTLTKFIE-----NRTLPHLLFYGPPGTG 56

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAAL------------------LTNLEDRD- 107
           KTT     AR++    + +S  +   A D   +                    +  D+D 
Sbjct: 57  KTTTVLAAARKMYHPSKMSSMVLELNASDERGIDVVRNTIVNFAQTKGLQAFASASDKDS 116

Query: 108 ----VLFIDEIHRLSIIVEEILYPAMEDFQ--LDLMVGEGPSARSVKINLSRFTLIAATT 161
               ++ +DE   ++   +  L   +E +   +   +     A  +    SR T      
Sbjct: 117 VPFKLVILDEADAMTKDAQNALRRVIEKYTDNVRFCIICNYLASIIPAIQSRCTRFRFAP 176

Query: 162 RVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
               L  P  D F +         +  + +++
Sbjct: 177 LDQSLIVPRLD-FIVKSEGLQMTPDGREALLR 207


>gi|300123151|emb|CBK24424.2| unnamed protein product [Blastocystis hominis]
          Length = 314

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 73/220 (33%), Gaps = 22/220 (10%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           +   I   RP+ LE+  G  E    +KV  E        L H+L  GPPG GKTT    +
Sbjct: 2   DQPWIEKHRPQCLEDIVGNEETIKRMKVITETG-----NLPHILLAGPPGTGKTTSMLCL 56

Query: 75  AREL-----GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE-EILYPA 128
           A  +            +         +   +       V   +  H+L ++ E + + PA
Sbjct: 57  AHAMLGDAYKTAVIELNASDDRGIDVVREKIKLFAQSKVSLPEGSHKLVLLDEADSMTPA 116

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
            +     +M     + R                    +  P+Q R  I       + E L
Sbjct: 117 AQQALRRIMELYSSTTR----------FALVCNISSKIIEPIQSRCAILRFNRLKDTEIL 166

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
             ++    +   +  T++    +   + G  R+A   L+ 
Sbjct: 167 DRLLH-ICEEEKITYTNDGLSALLFCADGDLRVAVNSLQA 205


>gi|191167488|ref|ZP_03029301.1| DNA polymerase III, tau subunit [Escherichia coli B7A]
 gi|193064152|ref|ZP_03045236.1| DNA polymerase III, tau subunit [Escherichia coli E22]
 gi|194428982|ref|ZP_03061514.1| DNA polymerase III, tau subunit [Escherichia coli B171]
 gi|218693932|ref|YP_002401599.1| DNA polymerase III subunits gamma and tau [Escherichia coli 55989]
 gi|256020441|ref|ZP_05434306.1| DNA polymerase III subunits gamma and tau [Shigella sp. D9]
 gi|260842670|ref|YP_003220448.1| DNA polymerase III/DNA elongation factor III, tau and gamma
           subunits [Escherichia coli O103:H2 str. 12009]
 gi|260853693|ref|YP_003227584.1| DNA polymerase III/DNA elongation factor III, tau and gamma
           subunits [Escherichia coli O26:H11 str. 11368]
 gi|260866631|ref|YP_003233033.1| DNA polymerase III/DNA elongation factor III, tau and gamma
           subunits [Escherichia coli O111:H- str. 11128]
 gi|300820283|ref|ZP_07100435.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS
           119-7]
 gi|300903259|ref|ZP_07121188.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS
           84-1]
 gi|301301624|ref|ZP_07207759.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS
           124-1]
 gi|309794794|ref|ZP_07689215.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS
           145-7]
 gi|331676144|ref|ZP_08376856.1| DNA polymerase III subunit tau [Escherichia coli H591]
 gi|332281622|ref|ZP_08394035.1| DNA polymerase III subunit tau [Shigella sp. D9]
 gi|190902444|gb|EDV62180.1| DNA polymerase III, tau subunit [Escherichia coli B7A]
 gi|192929181|gb|EDV82791.1| DNA polymerase III, tau subunit [Escherichia coli E22]
 gi|194412919|gb|EDX29209.1| DNA polymerase III, tau subunit [Escherichia coli B171]
 gi|218350664|emb|CAU96356.1| DNA polymerase III/DNA elongation factor III, tau and gamma
           subunits [Escherichia coli 55989]
 gi|257752342|dbj|BAI23844.1| DNA polymerase III/DNA elongation factor III, tau and gamma
           subunits [Escherichia coli O26:H11 str. 11368]
 gi|257757817|dbj|BAI29314.1| DNA polymerase III/DNA elongation factor III, tau and gamma
           subunits [Escherichia coli O103:H2 str. 12009]
 gi|257762987|dbj|BAI34482.1| DNA polymerase III/DNA elongation factor III, tau and gamma
           subunits [Escherichia coli O111:H- str. 11128]
 gi|300404698|gb|EFJ88236.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS
           84-1]
 gi|300527068|gb|EFK48137.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS
           119-7]
 gi|300843121|gb|EFK70881.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS
           124-1]
 gi|308121447|gb|EFO58709.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS
           145-7]
 gi|315059749|gb|ADT74076.1| DNA polymerase III/DNA elongation factor III, tau and gamma
           subunits [Escherichia coli W]
 gi|315256300|gb|EFU36268.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS
           85-1]
 gi|323178255|gb|EFZ63833.1| DNA polymerase III, subunits gamma and tau [Escherichia coli 1180]
 gi|323184699|gb|EFZ70070.1| DNA polymerase III, subunits gamma and tau [Escherichia coli 1357]
 gi|323379686|gb|ADX51954.1| DNA polymerase III, subunits gamma and tau [Escherichia coli KO11]
 gi|324116958|gb|EGC10871.1| DNA polymerase III [Escherichia coli E1167]
 gi|331076202|gb|EGI47484.1| DNA polymerase III subunit tau [Escherichia coli H591]
 gi|332103974|gb|EGJ07320.1| DNA polymerase III subunit tau [Shigella sp. D9]
          Length = 643

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 53/306 (17%), Positives = 107/306 (34%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++        + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +A    A   +A  + G+ R A  L     D A  +    ++ +   A
Sbjct: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAIASGDGQVSTQAVSA 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L  D+       L  +  +    G   + +   +A      +A+   +   + +  
Sbjct: 240 MLGTLDDDQA------LSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIA 293

Query: 309 FIQRTP 314
            +Q +P
Sbjct: 294 MVQLSP 299


>gi|323945253|gb|EGB41310.1| DNA polymerase III [Escherichia coli H120]
          Length = 643

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 53/306 (17%), Positives = 107/306 (34%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++        + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +A    A   +A  + G+ R A  L     D A  +    ++ +   A
Sbjct: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAIASGDGQVSTQAVSA 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L  D+       L  +  +    G   + +   +A      +A+   +   + +  
Sbjct: 240 MLGTLDDDQA------LSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIA 293

Query: 309 FIQRTP 314
            +Q +P
Sbjct: 294 MVQLSP 299


>gi|259502691|ref|ZP_05745593.1| DNA polymerase III [Lactobacillus antri DSM 16041]
 gi|259169336|gb|EEW53831.1| DNA polymerase III [Lactobacillus antri DSM 16041]
          Length = 598

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 58/302 (19%), Positives = 106/302 (35%), Gaps = 29/302 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+  +E  GQ      LK  I         + H  LF GP G GKT+ A++ A+ +  +
Sbjct: 11  RPQRFDELVGQQVVTQTLKNAI-----ITHQISHAYLFAGPRGTGKTSAAKIFAKAVNCH 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDL 136
                 P      ++   +TN +  DV+ ID      +  +  I ++  Y   +      
Sbjct: 66  HLKDGEPCNEC--EICKAITNGQLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQADYKVY 123

Query: 137 MVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ++ E             ++++   +    I ATT    +   +  R            +D
Sbjct: 124 IIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPLTIISRVQ-RFDFRRISAQD 182

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA----EVAHAKTITR 243
               ++       +   ++A   IA  + G  R A  +L +V  F+    ++  A T+T 
Sbjct: 183 AYERMKYILDQKQVQYEEKALWVIANAAEGGMRDALSILDQVLSFSDNQVQLKDALTVTG 242

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
            +    L +   +       D   L  +      G  G   I   +S  RD +     P 
Sbjct: 243 SVTKQLLEKYFFEVTAHQSADA--LNTMKDILNAGKDGQRFIEDLISFIRDVLLYQESPK 300

Query: 304 MI 305
           +I
Sbjct: 301 LI 302


>gi|82542963|ref|YP_406910.1| DNA polymerase III subunits gamma and tau [Shigella boydii Sb227]
 gi|81244374|gb|ABB65082.1| DNA polymerase III tau and gamma subunits [Shigella boydii Sb227]
          Length = 623

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 53/306 (17%), Positives = 107/306 (34%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++        + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +A    A   +A  + G+ R A  L     D A  +    ++ +   A
Sbjct: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAIASGDGQVSTQAVSA 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L  D+       L  +  +    G   + +   +A      +A+   +   + +  
Sbjct: 240 MLGTLDDDQA------LSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIA 293

Query: 309 FIQRTP 314
            +Q +P
Sbjct: 294 MVQLSP 299


>gi|110640731|ref|YP_668459.1| DNA polymerase III subunits gamma and tau [Escherichia coli 536]
 gi|191173688|ref|ZP_03035212.1| DNA polymerase III, tau subunit [Escherichia coli F11]
 gi|300997166|ref|ZP_07181662.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS
           200-1]
 gi|110342323|gb|ABG68560.1| DNA polymerase III subunit tau [Escherichia coli 536]
 gi|190906046|gb|EDV65661.1| DNA polymerase III, tau subunit [Escherichia coli F11]
 gi|300304301|gb|EFJ58821.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS
           200-1]
 gi|324010642|gb|EGB79861.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS
           60-1]
          Length = 643

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 53/306 (17%), Positives = 107/306 (34%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++        + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +A    A   +A  + G+ R A  L     D A  +    ++ +   A
Sbjct: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAIASGDGQVSTQAVSA 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L  D+       L  +  +    G   + +   +A      +A+   +   + +  
Sbjct: 240 MLGTLDDDQA------LSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIA 293

Query: 309 FIQRTP 314
            +Q +P
Sbjct: 294 MVQLSP 299


>gi|158321197|ref|YP_001513704.1| sporulation protease LonB [Alkaliphilus oremlandii OhILAs]
 gi|158141396|gb|ABW19708.1| Sporulation protease LonB [Alkaliphilus oremlandii OhILAs]
          Length = 571

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 58/265 (21%), Positives = 95/265 (35%), Gaps = 58/265 (21%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           +DR   +  N          +RP T+E+  GQ +    L+     A        HV+  G
Sbjct: 42  IDRLREMRENALTT-PLSESVRPSTIEDIIGQEDGIKALR-----AALCTNNPQHVIIYG 95

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSG------------------------------PVIA 91
           PPG+GKT  A+V+  E   N +S                                 P+  
Sbjct: 96  PPGVGKTAAARVILEEAKRNHQSPFNFSSKFIEIDATTLRFDERGIADPLMGSVHDPIYQ 155

Query: 92  KAGDLAA---------LLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL------ 136
            AG L            +T      +LF+DEI  L  +    L   +ED ++ L      
Sbjct: 156 GAGKLGQAGIPQPKPGAVTKANGG-ILFLDEIGELHPVQMNKLLKVLEDRKVFLESSYYS 214

Query: 137 MVGEGPSARSVKI----NLSRFTLIAATTRV-GLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
              +   +   +I      + F LI ATT+    + + L+ R  I I       E++  I
Sbjct: 215 SEDKNIPSHIHEIFNNGLPADFRLIGATTKSPSDIPDALRSRC-IEIYFRPLFPEEIGII 273

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSR 216
            ++  + +GL + + A  EI   + 
Sbjct: 274 ARKACQKSGLDIEERALEEIKRYAS 298


>gi|157159997|ref|YP_001457315.1| DNA polymerase III subunits gamma and tau [Escherichia coli HS]
 gi|170021142|ref|YP_001726096.1| DNA polymerase III subunits gamma and tau [Escherichia coli ATCC
           8739]
 gi|157065677|gb|ABV04932.1| DNA polymerase III, tau and gamma subunits [Escherichia coli HS]
 gi|169756070|gb|ACA78769.1| DNA polymerase III, subunits gamma and tau [Escherichia coli ATCC
           8739]
          Length = 643

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 53/306 (17%), Positives = 107/306 (34%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++        + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +A    A   +A  + G+ R A  L     D A  +    ++ +   A
Sbjct: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAIASGDGQVSTQAVSA 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L  D+       L  +  +    G   + +   +A      +A+   +   + +  
Sbjct: 240 MLGTLDDDQA------LSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIA 293

Query: 309 FIQRTP 314
            +Q +P
Sbjct: 294 MVQLSP 299


>gi|255324356|ref|ZP_05365475.1| DNA polymerase III subunit gamma/tau [Corynebacterium
           tuberculostearicum SK141]
 gi|255298575|gb|EET77873.1| DNA polymerase III subunit gamma/tau [Corynebacterium
           tuberculostearicum SK141]
          Length = 791

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 83/232 (35%), Gaps = 21/232 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T  E  GQ +  + L   ++A +         LF GP G GKT+ A+++AR
Sbjct: 2   ALYRKYRPATFAEVVGQEQVTTPLSAALDAGRINHAY----LFSGPRGCGKTSSARIMAR 57

Query: 77  ELGVNFRSTSGPVIAKAGDLAALL-TNLEDRDVLFIDEIHRLSIIVEEILY------PAM 129
            L      TS P   K     +L      + DV  +D      +     L       PA 
Sbjct: 58  SLNCEHGPTSTP-CGKCDSCVSLAPGGPGNLDVTELDAASHNGVEDMRELRDRAYYAPAE 116

Query: 130 EDFQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
             +++ ++         G     + V+        I ATT    +   ++ R        
Sbjct: 117 SRYRIFIIDEAHMISPSGANALLKVVEEPPEHVIFIFATTEPEKIIGTIRSR-THHYPFR 175

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                 +K ++QR  +  G+ V D     +     G+PR    LL ++   A
Sbjct: 176 LLTPPAMKGLLQRTVESEGVQVEDAVYPMVIEAGGGSPRDTLSLLDQLLAGA 227


>gi|269926492|ref|YP_003323115.1| DNA polymerase III, subunits gamma and tau [Thermobaculum terrenum
           ATCC BAA-798]
 gi|269790152|gb|ACZ42293.1| DNA polymerase III, subunits gamma and tau [Thermobaculum terrenum
           ATCC BAA-798]
          Length = 550

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 48/248 (19%), Positives = 86/248 (34%), Gaps = 20/248 (8%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
              R +T +E  GQ      L   I++ K         LF GP G GKT+ A+++A+ + 
Sbjct: 7   RKYRSQTFDELVGQEHVKKTLINAIKSGKIAHAY----LFCGPRGTGKTSTARLLAKAVN 62

Query: 80  V---------NFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
                     +  +       +A DL  +      +     D I R++    E+ Y    
Sbjct: 63  CLSEGTKPCNSCSACLSINEGRAVDLIEIDAASRRKVEDVADIIERVNFAPAELRYKVYI 122

Query: 131 DFQLDLMVGEGPSARSVKINLSR--FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
             ++ ++     +A    +         + ATT V  +   +  R             ++
Sbjct: 123 IDEVHMLTTHAFNALLKTLEEPPAHAIFVLATTEVWKVLPTIISRCQ-RFDFRRITPREI 181

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              +   A+   + +  +A   IA  S G+ R A  +L    D   V   + IT E    
Sbjct: 182 VERLAFIAENENIKIQKDALIAIAKASTGSLRDAISIL----DQLTVYGDEEITLEHVKQ 237

Query: 249 ALLRLAID 256
            L  +  D
Sbjct: 238 LLGIVGED 245


>gi|251794180|ref|YP_003008911.1| DNA polymerase III subunits gamma and tau [Paenibacillus sp. JDR-2]
 gi|247541806|gb|ACS98824.1| DNA polymerase III, subunits gamma and tau [Paenibacillus sp.
           JDR-2]
          Length = 590

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 85/227 (37%), Gaps = 27/227 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T ++  GQ      L+  I     R + + H  LF GP G GKTT A+V+A+ +   
Sbjct: 11  RPQTFQDMVGQRHIIQTLQNAI-----REDRVSHAYLFNGPRGTGKTTAAKVLAKAVNCE 65

Query: 82  FRSTSGPVIAKAGDLAAL--LTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQL 134
                GP      +  A   +T     DV+ ID      I  +  I +++ Y   E    
Sbjct: 66  R----GPAEEPCNECDACRGITAGHIMDVIEIDAASNRGIDEIRDIRDKVRYAPSEVRYK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             ++ E             ++++        I ATT    L   +  R           +
Sbjct: 122 VYIIDEVHMLTSEAFNALLKTLEEPPGHVIFILATTEPHKLPATIISRCQ-RFDFRQVSL 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           E+    +    +  G+   ++A   IA  S G  R A  LL +V  F
Sbjct: 181 EEQSERLFEICRDEGIEAEEDAIAYIARLSEGGMRDAISLLEQVAAF 227


>gi|15897670|ref|NP_342275.1| replication factor C small subunit [Sulfolobus solfataricus P2]
 gi|284174995|ref|ZP_06388964.1| replication factor C small subunit [Sulfolobus solfataricus 98/2]
 gi|42559539|sp|Q9UXF5|RFCS_SULSO RecName: Full=Replication factor C small subunit; Short=RFC small
           subunit; AltName: Full=Clamp loader small subunit;
           AltName: Full=SsoRFC small subunit
 gi|6015708|emb|CAB57535.1| activator 1, replication factor C, small subunit [Sulfolobus
           solfataricus P2]
 gi|13813941|gb|AAK41065.1| Activator 1, replication factor C, small subunit (rfc) [Sulfolobus
           solfataricus P2]
 gi|261602438|gb|ACX92041.1| Replication factor C [Sulfolobus solfataricus 98/2]
          Length = 330

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 48/235 (20%), Positives = 85/235 (36%), Gaps = 37/235 (15%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           +E       RP+TL++   Q E    LK F++      + + H+LF GPPG GKTT A  
Sbjct: 6   EEILWAEKYRPKTLDDIVNQREIIDRLKKFVK-----EKNMPHLLFAGPPGTGKTTAALA 60

Query: 74  VAR------------ELGVNFRSTSGPVIAKAGDLAA-LLTNLEDRDVLFIDEIHRLSII 120
           +              EL  +       +  K  + A  ++       V+ +DE   ++  
Sbjct: 61  LVHDLYGDNYTEYFLELNASDERGIDVIRNKVKEFARTVIPGDIPFKVVLLDEADNMTAD 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            ++ L   ME      +  E                I A   +  +  P+Q R  +  R 
Sbjct: 121 AQQALRRTME------LYTENTRF------------ILACNYLSKIIEPIQSRTAL-FRF 161

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
              + ED+   +   AK        +A   I   + G  R +  +L+    + ++
Sbjct: 162 YPLKKEDVVNRLIYIAKNEKAEYDQKALETIYDITMGDMRKSINILQAASAYGKI 216


>gi|78183642|ref|YP_376076.1| DNA-directed DNA polymerase [Synechococcus sp. CC9902]
 gi|78167936|gb|ABB25033.1| DNA polymerase III, tau subunit [Synechococcus sp. CC9902]
          Length = 625

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 85/221 (38%), Gaps = 19/221 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  ++  GQ    + L   + + +         LF GP G GKT+ A+++AR L    
Sbjct: 13  RPQRFDQLVGQEAITATLGNALTSNRIA----PAYLFSGPRGTGKTSSARILARSLNCQN 68

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P      DL   + +    DV+ ID      +  +  ++E   +  ++      +
Sbjct: 69  SDGPTPEPCGTCDLCRTIASGTALDVIEIDAASNTGVDNIRELIERSRFAPVQARWKVYV 128

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           V E             ++++    +   + ATT    +   +  R           ++ L
Sbjct: 129 VDECHMLSTAAFNALLKTLEEPPPQVVFVLATTDPQRVLPTILSRCQ-RFDFRRIPLDAL 187

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           +  +   A+   +A+  EA   +A RS+G  R A  LL ++
Sbjct: 188 EQHLTWIAEQESIAIQPEAIHVVAQRSQGGLRDAESLLDQL 228


>gi|330808463|ref|YP_004352925.1| DNA-directed DNA polymerase (DNA polymerase III, tau subunit)
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327376571|gb|AEA67921.1| DNA-directed DNA polymerase (DNA polymerase III, tau subunit)
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 691

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 65/314 (20%), Positives = 105/314 (33%), Gaps = 37/314 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPR+  E  GQ      LK  I A    ++ L H  LF G  G+GKTT+A+++A+ L   
Sbjct: 11  RPRSFREMVGQTHV---LKALINA--LDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILY------PAMEDFQ 133
              TS P     G+ +      E R  D++ ID   R  +     L       P+   F+
Sbjct: 66  TGITSTP----CGECSVCREIDEGRFVDLIEIDAASRTKVEDTRELLDNVQYAPSRGRFK 121

Query: 134 LDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           + L+               ++++        I ATT    L   +  R  +   L     
Sbjct: 122 VYLIDEVHMLSSHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSRC-LQFSLKNMTP 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           E +   +     +  +   D+A   +   + G+ R A  L     D A       +    
Sbjct: 181 ERVVEHLTHVLGVENVPFEDDALWLLGRAADGSMRDAMSL----TDQAIAFGEGKVMAAD 236

Query: 246 ADAALLRLAIDK-----MGFDQLDLR-YLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
             A L  L   +         + D +  L  +      GP     +S  L+         
Sbjct: 237 VRAMLGTLDHGQVYDVLHALIEGDAKALLEAVRHLAEQGPDWNGVLSEILNVLHRVAIAQ 296

Query: 300 IEPYMIQQGFIQRT 313
             P  +  G   R 
Sbjct: 297 ALPDGVDNGHGDRD 310


>gi|291545138|emb|CBL18247.1| DNA polymerase III, subunits gamma and tau [Ruminococcus sp. 18P13]
          Length = 530

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 53/256 (20%), Positives = 90/256 (35%), Gaps = 27/256 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPRT ++   Q    + LK  I++ K         LF G  G GKTT A++ A+ +    
Sbjct: 10  RPRTFDDVISQPHITTTLKNQIQSGKTAHAY----LFTGSRGTGKTTCARIFAKAINCLH 65

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
            +   P      ++          D++ ID      +  +  + +  +Y          +
Sbjct: 66  ATDGNPCQQC--EICRDAEAFSLSDIIEIDAASNNGVDDIRELRDGAVYTPERCKYKVYI 123

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             + ++   +    I ATT +  +   +  R            ED+
Sbjct: 124 IDEVHMLSQSAFNALLKIMEEPPAFVKFILATTEIHKVPATIVSRCQRFDFRRIL-PEDI 182

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              +   A    L + ++AA  IA  S G  R A  LL +   +        IT +   A
Sbjct: 183 TARLLYIAGEEQLTLDEQAARLIARLSDGGMRDALSLLDQCAAY-----DSNITLDTVSA 237

Query: 249 ALLRLAIDKMGFDQLD 264
           A      D + FD LD
Sbjct: 238 AAGIAGRDAL-FDLLD 252


>gi|67470376|ref|XP_651156.1| Activator 1 40 kDa subunit [Entamoeba histolytica HM-1:IMSS]
 gi|56467854|gb|EAL45769.1| Activator 1 40 kDa subunit, putative [Entamoeba histolytica
           HM-1:IMSS]
          Length = 315

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 55/291 (18%), Positives = 105/291 (36%), Gaps = 35/291 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+ L+E  G V+    LK F ++     +   H+L  G PG+GKTT    +A 
Sbjct: 8   PWVEKYRPKLLDEIIGNVDIIKTLKSFRDS-----KQFPHLLLCGQPGIGKTTSIHCLAH 62

Query: 77  E-----LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
           E             +         + + + +  ++ ++  D + ++ I+ E         
Sbjct: 63  ELLKDRYKDAVLELNASDERGIETIRSTIKSFCEKKLVLPDNLPKIVILDEA-------- 114

Query: 132 FQLDLMVGEGPSA--RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
              D M      A  R+++I+      + A      +  P+Q R    +       E+L 
Sbjct: 115 ---DSMTTAAFQALRRTMEIHSKTTRFVLACNTPEKIIEPIQSRCA-RLTFRPLGEEELM 170

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
             ++  A   G+ + D+A   + + S G  R A   L+             IT+E     
Sbjct: 171 NRIKEIAHCEGVDIEDDAVKALEIVSEGDMRKAINALQTCAII-----QGKITKEQVYQ- 224

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
                 D    D +       + ++F G  + I+ +   L    + I D+I
Sbjct: 225 ----RNDLPSADNIIQAIQLCLKKDFDGALIEIKKV-QQLGFDGNDIIDMI 270


>gi|328767253|gb|EGF77303.1| hypothetical protein BATDEDRAFT_91654 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 326

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 48/239 (20%), Positives = 85/239 (35%), Gaps = 42/239 (17%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
            ++          RP+TL E +GQ E  + L   I+      + L H+L  GPPG GKT+
Sbjct: 2   SDLVDRSPWTERYRPKTLSEISGQNEVVAVLSNTIQ-----TQNLPHLLLYGPPGTGKTS 56

Query: 70  LAQVVAR-------------ELGVNFRSTSGPVIAKAGDLAALL-----TNLEDRDVLFI 111
           +   +AR             EL  +       +  K  + A +      +N     ++ +
Sbjct: 57  IILALARQLYGANGLKGRLLELNASDERGIDVIREKVKNFAKITVSAAHSNAPPYKIIVL 116

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE   L+   +  L   ME++                  ++RF        V  + +PL 
Sbjct: 117 DEADSLTTDAQSALRRIMENYS----------------KITRF--CLICNYVSRIIDPLA 158

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
            R    +R     +  +   ++       L+    A   +A    G  R A  LL+ ++
Sbjct: 159 SRCA-KLRFKPIPMPIVIERLELICSNEKLSFAPGALDFLATSCAGDLRKAITLLQSIK 216


>gi|301117462|ref|XP_002906459.1| replication factor C subunit 4 [Phytophthora infestans T30-4]
 gi|262107808|gb|EEY65860.1| replication factor C subunit 4 [Phytophthora infestans T30-4]
          Length = 339

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 74/225 (32%), Gaps = 22/225 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+ ++E + Q    + LK  I   +     L H+LF GPPG GKT+    V R
Sbjct: 18  PWVEKYRPKNVDEISHQEHVVATLKTSIANGQ-----LPHLLFYGPPGTGKTSTIVAVGR 72

Query: 77  E-------LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           +           F   +         +   + +     +     +    IIV +      
Sbjct: 73  QLFGPDFRKNGRFLELNASDDRGIKVVREKVKSFAQGAISSASGLPPFKIIVLDEADSMT 132

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAA-TTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
            D Q  L        R +  N S+ T        V  +  P+  R     R    E   +
Sbjct: 133 GDAQSAL--------RRMMENYSKVTRFCLICNYVSRIIEPVASRCA-KFRFAPLEKISM 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
            + V+  A    + V+D     +   S G  R A   L+  +   
Sbjct: 184 ASRVRFIASEERVDVSDSVLESLLECSTGDLRKAINYLQSAKQLC 228


>gi|269861299|ref|XP_002650361.1| replication factor C subunit [Enterocytozoon bieneusi H348]
 gi|220066192|gb|EED43686.1| replication factor C subunit [Enterocytozoon bieneusi H348]
          Length = 298

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 66/158 (41%), Gaps = 17/158 (10%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
              RP+TL++  G         V I+  K       H+LF GPPG GKTT++++++++  
Sbjct: 7   EKYRPKTLDDVIGNE-------VIIKLIKNLDNTFPHLLFCGPPGTGKTTVSKILSQKFS 59

Query: 80  VNFRSTSGPVIAKAGDLAALLTN----LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                 +         +   +       E   ++ +DE   L+++ ++ L   ME   + 
Sbjct: 60  -KVLELNASDERGIDTIRNRIKTFTQLAEQSKLVIMDECDSLTLVAQQALRRLMEVKNVK 118

Query: 136 LMVGEGPSARSVKINLSR-----FTLIAATTRVGLLTN 168
            ++      + ++   SR     F  I   + + LLTN
Sbjct: 119 FILICNMINKIIEPIQSRTAILKFEKIPINSFLHLLTN 156


>gi|218703753|ref|YP_002411272.1| DNA polymerase III subunits gamma and tau [Escherichia coli UMN026]
 gi|293403591|ref|ZP_06647682.1| DNA polymerase III gamma and tau [Escherichia coli FVEC1412]
 gi|298379201|ref|ZP_06989082.1| DNA polymerase III subunit gamma/tau [Escherichia coli FVEC1302]
 gi|300900544|ref|ZP_07118711.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS
           198-1]
 gi|218430850|emb|CAR11724.1| DNA polymerase III/DNA elongation factor III, tau and gamma
           subunits [Escherichia coli UMN026]
 gi|291429444|gb|EFF02464.1| DNA polymerase III gamma and tau [Escherichia coli FVEC1412]
 gi|298280314|gb|EFI21818.1| DNA polymerase III subunit gamma/tau [Escherichia coli FVEC1302]
 gi|300356025|gb|EFJ71895.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS
           198-1]
          Length = 643

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 53/306 (17%), Positives = 107/306 (34%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++        + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +A    A   +A  + G+ R A  L     D A  +    ++ +   A
Sbjct: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAIASGDGQVSTQAVSA 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L  D+       L  +  +    G   + +   +A      +A+   +   + +  
Sbjct: 240 MLGTLDDDQA------LSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIA 293

Query: 309 FIQRTP 314
            +Q +P
Sbjct: 294 MVQLSP 299


>gi|242019775|ref|XP_002430334.1| Replication factor C subunit, putative [Pediculus humanus corporis]
 gi|212515458|gb|EEB17596.1| Replication factor C subunit, putative [Pediculus humanus corporis]
          Length = 340

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/241 (17%), Positives = 82/241 (34%), Gaps = 39/241 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+ L++   Q    + ++  I       + L H+LF GPPG GKTT     A+
Sbjct: 14  PWVEKYRPQKLDDLISQDYIVNTIRKLIS-----HKQLPHLLFYGPPGTGKTTTILACAK 68

Query: 77  -------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-DVLFIDEIHRLSIIVE 122
                        EL  +     G V     D A+  T  +    ++ +DE   ++   +
Sbjct: 69  VLYTPAQFASMVLELNASDDRGIGTVRGAILDFASTKTMFQGGVKLIILDEADAMTHDAQ 128

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             L   ME +                   +          +G +   +Q R     R   
Sbjct: 129 NALRRIMEKYT------------------ANVRFCIICNYLGKIIPAIQSRC-TKFRFAP 169

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR-RVRDFAEVAHAKTI 241
            + +++   ++   +   + ++D+    +    +G  R    +L+     F+EV      
Sbjct: 170 LDSKEILPRLEYVIEQEKIKISDDGKQAVLTLGQGDMRKVLNILQSTFVSFSEVNEENVY 229

Query: 242 T 242
           T
Sbjct: 230 T 230


>gi|119177342|ref|XP_001240460.1| hypothetical protein CIMG_07623 [Coccidioides immitis RS]
 gi|303316031|ref|XP_003068020.1| Activator 1 41 kDa subunit , putative [Coccidioides posadasii C735
           delta SOWgp]
 gi|240107696|gb|EER25875.1| Activator 1 41 kDa subunit , putative [Coccidioides posadasii C735
           delta SOWgp]
          Length = 393

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 83/249 (33%), Gaps = 53/249 (21%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
            + S+    +   RP+TL++   Q    + L+  ++A+      L H+LF GPPG GKT+
Sbjct: 30  ADKSKLQPWVEKYRPKTLDDVAAQDHTVTVLQRTLQAS-----NLPHMLFYGPPGTGKTS 84

Query: 70  LAQVVAR-------------ELGVNFRSTSGPVIAKAGDLAALL--------TNLEDR-- 106
               +A+             EL  +       V  K  D A +         +    +  
Sbjct: 85  TILALAKSLFGPKLYRSRILELNASDERGINIVREKIKDFARIQLSHPPAHDSEYRKQYP 144

Query: 107 ----DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA-TT 161
                ++ +DE   ++   +  L   ME F                   SR T       
Sbjct: 145 CPPFKIIILDEADSMTQDAQSALRRTMERF-------------------SRITRFCLVCN 185

Query: 162 RVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRI 221
            V  + +PL  R     R    +     T ++  AK   L + +     +   S G  R 
Sbjct: 186 YVTRIIDPLASRCS-KFRFKSLDGSAAGTRLEEIAKTEKLRLDNGVVDALIRCSEGDLRR 244

Query: 222 AGRLLRRVR 230
           A   ++   
Sbjct: 245 AITYMQSAA 253


>gi|16128454|ref|NP_415003.1| DNA polymerase III/DNA elongation factor III, tau and gamma
           subunits [Escherichia coli str. K-12 substr. MG1655]
 gi|89107339|ref|AP_001119.1| DNA polymerase III/DNA elongation factor III, tau and gamma
           subunits [Escherichia coli str. K-12 substr. W3110]
 gi|170080055|ref|YP_001729375.1| DNA polymerase III/DNA elongation factor III, tau and gamma
           subunits [Escherichia coli str. K-12 substr. DH10B]
 gi|188492605|ref|ZP_02999875.1| DNA polymerase III, tau subunit [Escherichia coli 53638]
 gi|209917686|ref|YP_002291770.1| DNA polymerase III subunits gamma and tau [Escherichia coli SE11]
 gi|238899757|ref|YP_002925553.1| DNA polymerase III/DNA elongation factor III, tau and gamma
           subunits [Escherichia coli BW2952]
 gi|253774540|ref|YP_003037371.1| DNA polymerase III subunits gamma and tau [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254160539|ref|YP_003043647.1| DNA polymerase III subunits gamma and tau [Escherichia coli B str.
           REL606]
 gi|256023912|ref|ZP_05437777.1| DNA polymerase III subunits gamma and tau [Escherichia sp. 4_1_40B]
 gi|300818196|ref|ZP_07098407.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS
           107-1]
 gi|300947873|ref|ZP_07162023.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS
           116-1]
 gi|300958039|ref|ZP_07170203.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS
           175-1]
 gi|301647399|ref|ZP_07247209.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS
           146-1]
 gi|118808|sp|P06710|DPO3X_ECOLI RecName: Full=DNA polymerase III subunit tau; Contains: RecName:
           Full=DNA polymerase III subunit gamma
 gi|41291|emb|CAA27827.1| unnamed protein product [Escherichia coli]
 gi|43320|emb|CAA28174.1| dnaZX protein (AA 1-643) [Escherichia coli]
 gi|145297|gb|AAA23457.1| dnaX ORF [Escherichia coli]
 gi|1773152|gb|AAB40224.1| dna polymerase III subunits gamma and tau [Escherichia coli]
 gi|1786676|gb|AAC73572.1| DNA polymerase III/DNA elongation factor III, tau and gamma
           subunits [Escherichia coli str. K-12 substr. MG1655]
 gi|85674609|dbj|BAE76249.1| DNA polymerase III/DNA elongation factor III, tau and gamma
           subunits [Escherichia coli str. K12 substr. W3110]
 gi|169887890|gb|ACB01597.1| DNA polymerase III/DNA elongation factor III, tau and gamma
           subunits [Escherichia coli str. K-12 substr. DH10B]
 gi|188487804|gb|EDU62907.1| DNA polymerase III, tau subunit [Escherichia coli 53638]
 gi|209910945|dbj|BAG76019.1| DNA polymerase III tau and gamma subunits [Escherichia coli SE11]
 gi|238860837|gb|ACR62835.1| DNA polymerase III/DNA elongation factor III, tau and gamma
           subunits [Escherichia coli BW2952]
 gi|242376252|emb|CAQ30943.1| DNA polymerase III, tau subunit, subunit of DNA polymerase III, tau
           subunit dimer and DNA polymerase III, holoenzyme
           [Escherichia coli BL21(DE3)]
 gi|253325584|gb|ACT30186.1| DNA polymerase III, subunits gamma and tau [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253972440|gb|ACT38111.1| DNA polymerase III subunits gamma and tau [Escherichia coli B str.
           REL606]
 gi|253976650|gb|ACT42320.1| DNA polymerase III subunits gamma and tau [Escherichia coli
           BL21(DE3)]
 gi|260450344|gb|ACX40766.1| DNA polymerase III, subunits gamma and tau [Escherichia coli DH1]
 gi|300315306|gb|EFJ65090.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS
           175-1]
 gi|300452551|gb|EFK16171.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS
           116-1]
 gi|300529087|gb|EFK50149.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS
           107-1]
 gi|301074454|gb|EFK89260.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS
           146-1]
 gi|309700730|emb|CBJ00026.1| DNA polymerase III subunits gamma and tau [Escherichia coli ETEC
           H10407]
 gi|315135151|dbj|BAJ42310.1| DNA polymerase III subunits gamma and tau [Escherichia coli DH1]
 gi|315616588|gb|EFU97205.1| DNA polymerase III, subunits gamma and tau [Escherichia coli 3431]
 gi|323938656|gb|EGB34905.1| DNA polymerase III [Escherichia coli E1520]
 gi|323943275|gb|EGB39431.1| DNA polymerase III [Escherichia coli E482]
 gi|323963459|gb|EGB59021.1| DNA polymerase III [Escherichia coli H489]
 gi|324016730|gb|EGB85949.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS
           117-3]
          Length = 643

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 53/306 (17%), Positives = 107/306 (34%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++        + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +A    A   +A  + G+ R A  L     D A  +    ++ +   A
Sbjct: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAIASGDGQVSTQAVSA 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L  D+       L  +  +    G   + +   +A      +A+   +   + +  
Sbjct: 240 MLGTLDDDQA------LSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIA 293

Query: 309 FIQRTP 314
            +Q +P
Sbjct: 294 MVQLSP 299


>gi|163814836|ref|ZP_02206224.1| hypothetical protein COPEUT_00986 [Coprococcus eutactus ATCC 27759]
 gi|158449775|gb|EDP26770.1| hypothetical protein COPEUT_00986 [Coprococcus eutactus ATCC 27759]
          Length = 567

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 80/228 (35%), Gaps = 29/228 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH-VLFVGPPGLGKTTLAQVVARELGVN 81
           RP T +E  GQ    + L+  I+      + L H  LF G  G GKT++A++ A+     
Sbjct: 28  RPDTFDEVKGQDHIVTTLRNQIK-----NDRLGHAFLFCGTRGTGKTSIAKIFAKACNCE 82

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDL 136
                 P    A      + +    +V+ ID      +  +  I EE+ YP  E      
Sbjct: 83  HPVDGSPCNECAS--CRAIADGSSLNVIEIDAASNNGVDNIRQIREEVAYPPTEGKYKVY 140

Query: 137 MVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ++ E             ++++   S    I ATT    +   +  R              
Sbjct: 141 IIDEVHMLSPGAFNALLKTLEEPPSYVIFILATTESHKIPITISSRCQKYDFRRI----P 196

Query: 188 LKTIVQRGAKLTG---LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           +  I  R A L     L    +A   +A    G+ R A  +L +   F
Sbjct: 197 VDVIADRLADLMDREGLEADRKAIDYVAKSGDGSMRDALSILDQCVAF 244


>gi|15800199|ref|NP_286211.1| DNA polymerase III subunits gamma and tau [Escherichia coli O157:H7
           EDL933]
 gi|15829777|ref|NP_308550.1| DNA polymerase III subunits gamma and tau [Escherichia coli O157:H7
           str. Sakai]
 gi|168747852|ref|ZP_02772874.1| DNA polymerase III, tau subunit [Escherichia coli O157:H7 str.
           EC4113]
 gi|168754577|ref|ZP_02779584.1| DNA polymerase III, tau subunit [Escherichia coli O157:H7 str.
           EC4401]
 gi|168760373|ref|ZP_02785380.1| DNA polymerase III, tau subunit [Escherichia coli O157:H7 str.
           EC4501]
 gi|168768427|ref|ZP_02793434.1| DNA polymerase III, tau subunit [Escherichia coli O157:H7 str.
           EC4486]
 gi|168777168|ref|ZP_02802175.1| DNA polymerase III, tau subunit [Escherichia coli O157:H7 str.
           EC4196]
 gi|168778965|ref|ZP_02803972.1| DNA polymerase III, tau subunit [Escherichia coli O157:H7 str.
           EC4076]
 gi|168786323|ref|ZP_02811330.1| DNA polymerase III, tau subunit [Escherichia coli O157:H7 str.
           EC869]
 gi|168798036|ref|ZP_02823043.1| DNA polymerase III, tau subunit [Escherichia coli O157:H7 str.
           EC508]
 gi|195936033|ref|ZP_03081415.1| DNA polymerase III subunits gamma and tau [Escherichia coli O157:H7
           str. EC4024]
 gi|208806002|ref|ZP_03248339.1| DNA polymerase III, tau subunit [Escherichia coli O157:H7 str.
           EC4206]
 gi|208815685|ref|ZP_03256864.1| DNA polymerase III, tau subunit [Escherichia coli O157:H7 str.
           EC4045]
 gi|208822985|ref|ZP_03263303.1| DNA polymerase III, tau subunit [Escherichia coli O157:H7 str.
           EC4042]
 gi|209399465|ref|YP_002269120.1| DNA polymerase III, tau subunit [Escherichia coli O157:H7 str.
           EC4115]
 gi|217326165|ref|ZP_03442249.1| DNA polymerase III, tau subunit [Escherichia coli O157:H7 str.
           TW14588]
 gi|254791653|ref|YP_003076490.1| DNA polymerase III subunits gamma and tau [Escherichia coli O157:H7
           str. TW14359]
 gi|261223952|ref|ZP_05938233.1| DNA polymerase III/DNA elongation factor III, tau and gamma
           subunits [Escherichia coli O157:H7 str. FRIK2000]
 gi|261256334|ref|ZP_05948867.1| DNA polymerase III/DNA elongation factor III, tau and gamma
           subunits [Escherichia coli O157:H7 str. FRIK966]
 gi|291281376|ref|YP_003498194.1| DNA polymerase III, tau subunit [Escherichia coli O55:H7 str.
           CB9615]
 gi|12513340|gb|AAG54819.1|AE005226_2 DNA polymerase III, tau and gamma subunits; DNA elongation factor
           III [Escherichia coli O157:H7 str. EDL933]
 gi|13359980|dbj|BAB33946.1| DNA polymerase III tau and gamma subunits [Escherichia coli O157:H7
           str. Sakai]
 gi|187767563|gb|EDU31407.1| DNA polymerase III, tau subunit [Escherichia coli O157:H7 str.
           EC4196]
 gi|188017706|gb|EDU55828.1| DNA polymerase III, tau subunit [Escherichia coli O157:H7 str.
           EC4113]
 gi|189002758|gb|EDU71744.1| DNA polymerase III, tau subunit [Escherichia coli O157:H7 str.
           EC4076]
 gi|189358057|gb|EDU76476.1| DNA polymerase III, tau subunit [Escherichia coli O157:H7 str.
           EC4401]
 gi|189362356|gb|EDU80775.1| DNA polymerase III, tau subunit [Escherichia coli O157:H7 str.
           EC4486]
 gi|189369171|gb|EDU87587.1| DNA polymerase III, tau subunit [Escherichia coli O157:H7 str.
           EC4501]
 gi|189373554|gb|EDU91970.1| DNA polymerase III, tau subunit [Escherichia coli O157:H7 str.
           EC869]
 gi|189379409|gb|EDU97825.1| DNA polymerase III, tau subunit [Escherichia coli O157:H7 str.
           EC508]
 gi|208725803|gb|EDZ75404.1| DNA polymerase III, tau subunit [Escherichia coli O157:H7 str.
           EC4206]
 gi|208732333|gb|EDZ81021.1| DNA polymerase III, tau subunit [Escherichia coli O157:H7 str.
           EC4045]
 gi|208737178|gb|EDZ84862.1| DNA polymerase III, tau subunit [Escherichia coli O157:H7 str.
           EC4042]
 gi|209160865|gb|ACI38298.1| DNA polymerase III, tau subunit [Escherichia coli O157:H7 str.
           EC4115]
 gi|209778388|gb|ACI87506.1| DNA polymerase III tau and gamma subunits [Escherichia coli]
 gi|209778390|gb|ACI87507.1| DNA polymerase III tau and gamma subunits [Escherichia coli]
 gi|209778392|gb|ACI87508.1| DNA polymerase III tau and gamma subunits [Escherichia coli]
 gi|209778394|gb|ACI87509.1| DNA polymerase III tau and gamma subunits [Escherichia coli]
 gi|209778396|gb|ACI87510.1| DNA polymerase III tau and gamma subunits [Escherichia coli]
 gi|217322386|gb|EEC30810.1| DNA polymerase III, tau subunit [Escherichia coli O157:H7 str.
           TW14588]
 gi|254591053|gb|ACT70414.1| DNA polymerase III/DNA elongation factor III, tau and gamma
           subunits [Escherichia coli O157:H7 str. TW14359]
 gi|290761249|gb|ADD55210.1| DNA polymerase III, tau subunit [Escherichia coli O55:H7 str.
           CB9615]
 gi|320638464|gb|EFX08178.1| DNA polymerase III subunits gamma and tau [Escherichia coli O157:H7
           str. G5101]
 gi|320643845|gb|EFX12968.1| DNA polymerase III subunits gamma and tau [Escherichia coli O157:H-
           str. 493-89]
 gi|320649196|gb|EFX17774.1| DNA polymerase III subunits gamma and tau [Escherichia coli O157:H-
           str. H 2687]
 gi|320656089|gb|EFX24005.1| DNA polymerase III subunits gamma and tau [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320661239|gb|EFX28670.1| DNA polymerase III subunits gamma and tau [Escherichia coli O55:H7
           str. USDA 5905]
 gi|320665215|gb|EFX32308.1| DNA polymerase III subunits gamma and tau [Escherichia coli O157:H7
           str. LSU-61]
          Length = 643

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 53/306 (17%), Positives = 107/306 (34%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++        + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +A    A   +A  + G+ R A  L     D A  +    ++ +   A
Sbjct: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAIASGDGQVSTQAVSA 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L  D+       L  +  +    G   + +   +A      +A+   +   + +  
Sbjct: 240 MLGTLDDDQA------LSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIA 293

Query: 309 FIQRTP 314
            +Q +P
Sbjct: 294 MVQLSP 299


>gi|332763772|gb|EGJ94010.1| DNA polymerase III, subunits gamma and tau [Shigella flexneri
           K-671]
          Length = 439

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 53/306 (17%), Positives = 107/306 (34%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++        + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +A    A   +A  + G+ R A  L     D A  +    ++ +   A
Sbjct: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAIASGDGQVSTQAVSA 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L  D+       L  +  +    G   + +   +A      +A+   +   + +  
Sbjct: 240 MLGTLDDDQA------LSLVEAMVEGNGERVMALINEAAARGIEWEALLVEMLGLLHRIA 293

Query: 309 FIQRTP 314
            +Q +P
Sbjct: 294 MVQLSP 299


>gi|300122519|emb|CBK23089.2| unnamed protein product [Blastocystis hominis]
          Length = 341

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/243 (18%), Positives = 78/243 (32%), Gaps = 39/243 (16%)

Query: 3   DREGLLSRNVSQEDA--DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           D   +   +  Q DA   +   RP +L+    Q +  + +K FIE        L H+LF 
Sbjct: 6   DNTTITRGDFEQNDALPWVEKYRPTSLDNIVSQDDIVATIKRFIE-----GNRLPHLLFY 60

Query: 61  GPPGLGKTTLAQVVAR------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-D 107
           GPPG GKTT    VA+            EL  +       V  +    A           
Sbjct: 61  GPPGTGKTTTIMAVAKMLYGSSHSSMVLELNASDDRGINVVREQIKVFAGTKKLFHTGVK 120

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           ++ +DE   ++   +  L   +E +       +                      V  + 
Sbjct: 121 LVILDEADNMTNAAQFALRRIIEKYS------QNTRF------------CLICNYVSEII 162

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             +Q R     R      + +++ +    +   +   D+    +   SRG  R    +L+
Sbjct: 163 PAVQSRC-TRFRFQPLNPQLIRSRLLYILRQENVEFDDDGVAALLALSRGDMRRVINVLQ 221

Query: 228 RVR 230
              
Sbjct: 222 ATA 224


>gi|291558238|emb|CBL35355.1| DNA polymerase III, subunits gamma and tau [Eubacterium siraeum
           V10Sc8a]
          Length = 743

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 89/249 (35%), Gaps = 22/249 (8%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     R  T +E   Q    + LK  I+A           LF G  G GKTT A+++A+
Sbjct: 4   ALYRKYRSATFDEVISQEHITTTLKNQIKA----GTPAHAYLFTGSRGTGKTTCAKLMAK 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +         P   +     A+       D++ +D      +  +  + +E++Y     
Sbjct: 60  AVNCLSPVDGNP-CGECESCKAI--AAGCPDIIEMDAASNNGVDDVRALRDEVMYAPTVC 116

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT +  +   +  R     R + 
Sbjct: 117 RYKVYIIDEVHMLSSQAFNALLKTIEEPPPHVIFILATTEIHKVPATIASRCQ-QFRFSR 175

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            ++E+    +   AK   + +T++AA  I+  S G  R A  LL +    +     +T+ 
Sbjct: 176 IDVEESTKRLCEIAKKENVNITEDAARLISRLSDGGMRDAVSLLDQCISVSADIDEETVR 235

Query: 243 REIADAALL 251
                A   
Sbjct: 236 TTAGIAGTE 244


>gi|119492485|ref|XP_001263608.1| DNA replication factor C subunit Rfc2, putative [Neosartorya
           fischeri NRRL 181]
 gi|119411768|gb|EAW21711.1| DNA replication factor C subunit Rfc2, putative [Neosartorya
           fischeri NRRL 181]
          Length = 420

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 46/244 (18%), Positives = 76/244 (31%), Gaps = 57/244 (23%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+TL++   Q      L+  ++A+      L H+LF GPPG GKT+    +A+
Sbjct: 38  PWVEKYRPKTLDDVAAQDHTTKVLQRTLQAS-----NLPHMLFYGPPGTGKTSTILALAK 92

Query: 77  -------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD---------------- 107
                        EL  +     G V  K    A   T L                    
Sbjct: 93  SLFGPALYRSRILELNASDERGIGIVREKVKGFA--RTQLSQPTGLDSSYFEQYPCPPFK 150

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA-TTRVGLL 166
           ++ +DE   ++   +  L   ME +                   SR T        V  +
Sbjct: 151 IIILDEADSMTQDAQSALRRTMEQY-------------------SRITRFCLVCNYVTRV 191

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
             PL  R     R    +       +   A+L  L + +    ++     G  R A   +
Sbjct: 192 IEPLASRCS-KFRFKPLDNSAAAERLAHIARLENLKLDEGVIDKLISCGEGDLRRAITYM 250

Query: 227 RRVR 230
           +   
Sbjct: 251 QSAA 254


>gi|156383785|ref|XP_001633013.1| predicted protein [Nematostella vectensis]
 gi|156220077|gb|EDO40950.1| predicted protein [Nematostella vectensis]
          Length = 357

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 55/280 (19%), Positives = 86/280 (30%), Gaps = 49/280 (17%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           S    +    +   RP+ +++   Q E    LK  +E A      L ++LF GPPG GKT
Sbjct: 24  SLGKQKSSPWVEKYRPKCVDDVAQQEEVVMVLKKSLEGAD-----LPNLLFYGPPGTGKT 78

Query: 69  TLAQVVAR-------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD-------- 107
           +    VAR             EL  +       +  K    + L  +    D        
Sbjct: 79  STILAVARELYGHEMLKQRVLELNASDERGIQVIRDKVKTFSQLSASASRPDGKPCPPFK 138

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           ++ +DE   ++   +  L   ME                     +RF        V  + 
Sbjct: 139 LVILDEADSMTPSAQAALRRTMEKQTKT----------------TRF--CLICNYVSRII 180

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
            PL  R     R      E L+  ++       +   D+A  E+   S G  R A   L+
Sbjct: 181 EPLTSRCS-KFRFKPLSSEILERRLKEICVKEEVNCEDKAIDEVIKISEGDMRKAITFLQ 239

Query: 228 RVR----DFAEVAHAKTITREIADAALLRLAIDKMGFDQL 263
                  D   VA             L++   D    D  
Sbjct: 240 SAHRLKGDSGIVAEDIIEIAGAIPDNLIKSLFDASRSDSY 279


>gi|193067655|ref|ZP_03048622.1| DNA polymerase III, tau subunit [Escherichia coli E110019]
 gi|300924198|ref|ZP_07140190.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS
           182-1]
 gi|301330662|ref|ZP_07223264.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS
           78-1]
 gi|192959067|gb|EDV89503.1| DNA polymerase III, tau subunit [Escherichia coli E110019]
 gi|300419651|gb|EFK02962.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS
           182-1]
 gi|300843323|gb|EFK71083.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS
           78-1]
          Length = 643

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 53/306 (17%), Positives = 107/306 (34%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++        + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +A    A   +A  + G+ R A  L     D A  +    ++ +   A
Sbjct: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAIASGDGQVSTQAVSA 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L  D+       L  +  +    G   + +   +A      +A+   +   + +  
Sbjct: 240 MLGTLDDDQA------LSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIA 293

Query: 309 FIQRTP 314
            +Q +P
Sbjct: 294 MVQLSP 299


>gi|320032378|gb|EFW14331.1| DNA replication factor C subunit Rfc2 [Coccidioides posadasii str.
           Silveira]
          Length = 393

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 83/249 (33%), Gaps = 53/249 (21%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
            + S+    +   RP+TL++   Q    + L+  ++A+      L H+LF GPPG GKT+
Sbjct: 30  ADKSKLQPWVEKYRPKTLDDVAAQDHTVTVLQRTLQAS-----NLPHMLFYGPPGTGKTS 84

Query: 70  LAQVVAR-------------ELGVNFRSTSGPVIAKAGDLAALL--------TNLEDR-- 106
               +A+             EL  +       V  K  D A +         +    +  
Sbjct: 85  TILALAKSLFGPKLYRSRILELNASDERGINIVREKIKDFARIQLSHPPAHDSEYRKQYP 144

Query: 107 ----DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA-TT 161
                ++ +DE   ++   +  L   ME F                   SR T       
Sbjct: 145 CPPFKIIILDEADSMTQDAQSALRRTMERF-------------------SRITRFCLVCN 185

Query: 162 RVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRI 221
            V  + +PL  R     R    +     T ++  AK   L + +     +   S G  R 
Sbjct: 186 YVTRIIDPLASRCS-KFRFKSLDGSAAGTRLEEIAKTEKLRLDNGVVDALIRCSEGDLRR 244

Query: 222 AGRLLRRVR 230
           A   ++   
Sbjct: 245 AITYMQSAA 253


>gi|295105372|emb|CBL02916.1| DNA polymerase III, subunits gamma and tau [Faecalibacterium
           prausnitzii SL3/3]
          Length = 628

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/235 (20%), Positives = 81/235 (34%), Gaps = 21/235 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  E+  GQ    + LK  I A +         LF G  G GKTT A++ A+ +    
Sbjct: 10  RPQRFEDVVGQRAIVTALKNQITAGRVGHAY----LFTGVRGTGKTTCAKIFAKAVNCLH 65

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P      ++   + N    DV+ +D      +  +  + +E  Y          +
Sbjct: 66  PVNGDP--CGECEICKGIDNGSLLDVVEMDAASNNGVDDIRDLRDETAYTPSACQYKVYI 123

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++   +    I ATT +  +   +  R            ED+
Sbjct: 124 IDEVHMLSTAAFNALLKTLEEPPAHVIFILATTEIQKVPATILSRCQRYDFTRI-GPEDI 182

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
              V+  A    L +T + A  IA  + G  R A  +L           A  + R
Sbjct: 183 ARRVEYIAGEEKLELTSDGAELIARLADGALRDALSILDTCAGVTAKIDADVVRR 237


>gi|58270194|ref|XP_572253.1| helicase [Cryptococcus neoformans var. neoformans JEC21]
 gi|57228511|gb|AAW44946.1| helicase, putative [Cryptococcus neoformans var. neoformans JEC21]
          Length = 397

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 49/244 (20%), Positives = 83/244 (34%), Gaps = 17/244 (6%)

Query: 104 EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATT 161
             R VL IDEIHR +   +++L P +E   + L+    E PS +     LSR  +     
Sbjct: 3   GRRTVLMIDEIHRFNRAQQDLLLPYVEKGWIQLIGATTENPSFKVNGALLSRCQVFTLHA 62

Query: 162 RVGLLTNPLQDRFGIPIRLN---FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGT 218
                   +       I  +    Y    L   +   A   G A       E+A+R+  T
Sbjct: 63  HSPESLQIILRNAVQTISESEPIPYLPSGLIPFLADVAD--GDARQALNGLELALRTCQT 120

Query: 219 PR--IAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFG 276
                +    +RV   +     K   ++  DAA+     D     + D   +  + R   
Sbjct: 121 MDETASAEKAQRVNSASGEKMEKEGQKDEFDAAVEEAEEDYQKK-KRDEEIMDAVRRGLQ 179

Query: 277 G-----GPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGI 329
                 G    + ISA     R +       ++ +       P    R L+ +A + +G+
Sbjct: 180 KGYNRTGEERYDMISALHKCLRGSDGSAAMYWLARMITGGEDPLYIARRLIVVASEDVGL 239

Query: 330 DIPH 333
              H
Sbjct: 240 ADNH 243


>gi|332880680|ref|ZP_08448353.1| DNA polymerase III, subunit gamma and tau [Capnocytophaga sp. oral
           taxon 329 str. F0087]
 gi|332681314|gb|EGJ54238.1| DNA polymerase III, subunit gamma and tau [Capnocytophaga sp. oral
           taxon 329 str. F0087]
          Length = 604

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/211 (20%), Positives = 67/211 (31%), Gaps = 40/211 (18%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP   +   GQ    + LK  I A K         LF GP G+GKTT A++ A+ +
Sbjct: 8   ARKYRPSAFDAVVGQEALTTTLKNAIAAGKLAHAY----LFCGPRGVGKTTCARIFAKTI 63

Query: 79  GV-------------------------NFRSTSGPVIAKAGDLAALLT------NLEDRD 107
                                      N             ++ AL+        +    
Sbjct: 64  NCLHPSDNREACDECESCKAFNEQRSLNIHELDAASNNSVEEIRALIEKVRIPPQVGRYK 123

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTR-VG 164
           V  IDE+H LS          +E+    +  ++      + +   LSR  +       V 
Sbjct: 124 VFIIDEVHMLSTAAFNAFLKTLEEPPSYVIFILATTEKHKILPTILSRCQVYDFNRMSVQ 183

Query: 165 LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
            + N L  +F        YE E L  I Q+ 
Sbjct: 184 TIVNHL--KFVADKEGYAYEPEALNIIAQKA 212


>gi|308322095|gb|ADO28185.1| replication factor c subunit 4 [Ictalurus furcatus]
          Length = 358

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 50/242 (20%), Positives = 76/242 (31%), Gaps = 45/242 (18%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+ ++E   Q E  + LK  +E A      L ++LF GPPG GKT+     AR
Sbjct: 34  PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGAD-----LPNLLFYGPPGTGKTSTILAAAR 88

Query: 77  E------LGVNFRSTSGP------VIAKAGDLAALLTNLEDRD---------VLFIDEIH 115
           E              +        VI +     A LT    R          ++ +DE  
Sbjct: 89  ELYGPELYRQRVLELNASDERGIQVIREKVKNFAQLTVAGTRTDGKSCPPFKIIILDEAD 148

Query: 116 RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
            ++   +  L   ME             +R+ +  L           V  +  PL  R  
Sbjct: 149 SMTGAAQAALRRTMEK-----------ESRTTRFCL-------ICNYVSRIIEPLTSRCS 190

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
              R      E  +  +        L  + E    +   S G  R A  LL+    F   
Sbjct: 191 -KFRFKPLTNEVQQERLLEICAKENLKYSKEGIDALVKVSEGDLRKAITLLQSTARFGAE 249

Query: 236 AH 237
             
Sbjct: 250 KE 251


>gi|331651410|ref|ZP_08352435.1| DNA polymerase III subunit tau [Escherichia coli M718]
 gi|331051151|gb|EGI23203.1| DNA polymerase III subunit tau [Escherichia coli M718]
          Length = 645

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 53/306 (17%), Positives = 107/306 (34%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++        + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +A    A   +A  + G+ R A  L     D A  +    ++ +   A
Sbjct: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAIASGDGQVSTQAVSA 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L  D+       L  +  +    G   + +   +A      +A+   +   + +  
Sbjct: 240 MLGTLDDDQA------LSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIA 293

Query: 309 FIQRTP 314
            +Q +P
Sbjct: 294 MVQLSP 299


>gi|88800845|ref|ZP_01116400.1| DNA polymerase III subunits gamma and tau [Reinekea sp. MED297]
 gi|88776418|gb|EAR07638.1| DNA polymerase III subunits gamma and tau [Reinekea sp. MED297]
          Length = 677

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 60/296 (20%), Positives = 102/296 (34%), Gaps = 31/296 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP T +E  GQV     LK  + A     E L H  LF G  G+GKTT+A+++A+ L   
Sbjct: 11  RPGTFDEMVGQVHV---LKALVNA--LDQERLHHAYLFTGTRGVGKTTIARLLAKSLNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEIL-----YPAMEDFQL 134
              +S P     G  A+     E R  D++ +D   R  +     L     Y        
Sbjct: 66  QGVSSKP----CGQCASCREIAEGRFVDLIEVDAASRTKVEDTRELLENVQYAPTRGRFK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             ++ E             ++++        + ATT    L   +  R  +   L     
Sbjct: 122 VYLIDEVHMLSTSSFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRC-LQFNLKNMSR 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           E +   +     +  +   + +   IA  ++G+ R A  L  +   F   A A+     +
Sbjct: 181 EHIVQHLNHILTVEQVPFDEPSLWAIAEGAQGSMRDALSLTDQAIAFGHGALAEQEVAAM 240

Query: 246 -ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
                L R+        Q D   L  +           +T+   L+E    +  + 
Sbjct: 241 LGTVDLKRVLNLVRALLQKDADGLLAMVSELDEHTPDYQTL---LTELMSTLHRVA 293


>gi|157154853|ref|YP_001461658.1| DNA polymerase III subunits gamma and tau [Escherichia coli
           E24377A]
 gi|157076883|gb|ABV16591.1| DNA polymerase III, tau and gamma subunits [Escherichia coli
           E24377A]
          Length = 643

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 53/306 (17%), Positives = 107/306 (34%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++        + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +A    A   +A  + G+ R A  L     D A  +    ++ +   A
Sbjct: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAIASGDGQVSTQAVSA 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L  D+       L  +  +    G   + +   +A      +A+   +   + +  
Sbjct: 240 MLGTLDDDQA------LSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIA 293

Query: 309 FIQRTP 314
            +Q +P
Sbjct: 294 MVQLSP 299


>gi|281344058|gb|EFB19642.1| hypothetical protein PANDA_008377 [Ailuropoda melanoleuca]
          Length = 318

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 74/223 (33%), Gaps = 38/223 (17%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75
           +   RP+TL +     +  S ++ FI       + L H+L  GPPG GKT+     A   
Sbjct: 1   VEKYRPQTLNDLISHQDILSTIQKFIS-----EDRLPHLLLYGPPGTGKTSTILACAKQL 55

Query: 76  ---RELGVNFRSTSGPVIAKAGDLAA-LLTNLEDRDVL-------FIDEIHRLSIIVEEI 124
              +E G      +         +   +L+    R +         +DE   ++   +  
Sbjct: 56  YKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNA 115

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           L   +E F       E      +   LS+                LQ R     R     
Sbjct: 116 LRRVIEKF------TENTRFCLICNYLSKIIP------------ALQSRC-TRFRFGPLT 156

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
            E +   ++   K   + ++++    +   + G  R A  +L+
Sbjct: 157 PELMVPRLEHVIKEEKVDLSEDGMKALVTLASGDMRRALNILQ 199


>gi|94969002|ref|YP_591050.1| DNA polymerase III, subunits gamma and tau [Candidatus Koribacter
           versatilis Ellin345]
 gi|94551052|gb|ABF40976.1| DNA polymerase III, tau subunit [Candidatus Koribacter versatilis
           Ellin345]
          Length = 632

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 78/225 (34%), Gaps = 19/225 (8%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+   E  GQ      LK  IE  +         +F G  G+GKTT+A+++A  L
Sbjct: 7   ARKYRPQKFSEVIGQDHVTRTLKNAIEQQRIAHGY----IFSGHRGIGKTTIARILAMAL 62

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQ 133
                           D    +   +  DV+ ID      I  +  + E   Y    D  
Sbjct: 63  NCQSADHPVSEPCGVCDSCKEVKAGQSVDVIEIDAATNRGIDEIRELREAARYRPARDRF 122

Query: 134 LDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
              ++ E             ++++        + ATT    +   ++ R       +  +
Sbjct: 123 KIYILDEAHQITDAAFNALLKTLEEPPGHIVFMMATTEPEDIPQTIRSRCQ-HFSFHAVK 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
            +D+   ++  A   G+   D+A   +A    G+ R A  ++ + 
Sbjct: 182 FDDIVLQLRDIAGKEGIGAEDDALAMLAEAGDGSMRDALSIMDQA 226


>gi|296134052|ref|YP_003641299.1| Sigma 54 interacting domain protein [Thermincola sp. JR]
 gi|296032630|gb|ADG83398.1| Sigma 54 interacting domain protein [Thermincola potens JR]
          Length = 560

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 54/268 (20%), Positives = 87/268 (32%), Gaps = 58/268 (21%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +      RP T  E  GQ E    LK     A        HV+  GPPG+GKT  A++V 
Sbjct: 61  EPLSEKTRPSTFNEIVGQQEGIKALK-----AALCGPNPQHVIIYGPPGVGKTAAARLVM 115

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDV--------------------------- 108
            E   N  S      AK  ++ A     ++R +                           
Sbjct: 116 EEAKKNPASPF-KEDAKFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPMGQAGIPQP 174

Query: 109 ------------LFIDEIHRLSIIVEEILYPAMEDFQLDL----MVGEGPSARSVKINL- 151
                       LFIDEI  L  +    L   +ED ++ L       E  +      ++ 
Sbjct: 175 KPGAVTKAHGGMLFIDEIGELHPVQMNKLLKVLEDRKVILESAYYSSEDRNVPVHIHDIF 234

Query: 152 -----SRFTLIAATTRVGL-LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTD 205
                + F L+ ATTR+   + + ++ R            E    I+   A+       +
Sbjct: 235 QNGLPADFRLVGATTRMPHEIPSAIRSRCLEVFFRALLPDEI--GIIAENARRKIGFEAE 292

Query: 206 EAACEIAMRSRGTPRIAGRLLRRVRDFA 233
             A ++  +     R A  +++     A
Sbjct: 293 PGALDVVKKYANNGREAVNIVQIAAGIA 320


>gi|63102390|gb|AAH95222.1| Rfc5 protein [Danio rerio]
 gi|182889646|gb|AAI65456.1| Replication factor C (activator 1) 5 [Danio rerio]
          Length = 334

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/241 (17%), Positives = 74/241 (30%), Gaps = 41/241 (17%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           ++  S+    +   RP+TL++     +  S ++ FI       + L H+LF GPPG GKT
Sbjct: 7   TQPQSRNLPWVEKYRPQTLDDLISHQDILSTIQKFIS-----EDRLPHLLFYGPPGTGKT 61

Query: 69  TLAQVVAR------ELGVNFRSTSGPVIAKAGDLAA-LLTNLEDRDVL-------FIDEI 114
           +     AR      E        +         +   +L+    R +         +DE 
Sbjct: 62  STILACARQLYKDKEFNSMVLELNASDDRGIDVVRGPILSFASTRTIFKKGFKLVILDEA 121

Query: 115 HRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRF 174
             ++   +  L   +E F       E      +   LS+      +        PL    
Sbjct: 122 DAMTQDAQNALRRVIEKF------TENTRFCLICNYLSKIIPALQSRCTRFRFGPLSQNQ 175

Query: 175 GIPIRLNF-------YEIEDLKTIV-------QRGAKLTGLAVTDEAA--CEIAMRSRGT 218
            IP   +           + +K IV       +R   +             E      G 
Sbjct: 176 MIPRLEHVIQQESIDITPDGMKAIVTLSTGDMRRSLNILQSTHMAYGKVTEETVYTCTGH 235

Query: 219 P 219
           P
Sbjct: 236 P 236


>gi|260589048|ref|ZP_05854961.1| DNA polymerase III, gamma and tau subunit [Blautia hansenii DSM
           20583]
 gi|260540827|gb|EEX21396.1| DNA polymerase III, gamma and tau subunit [Blautia hansenii DSM
           20583]
          Length = 538

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 80/230 (34%), Gaps = 21/230 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP+  E+  GQ    + LK  I+A +         LF G  G GKTT+A+++AR
Sbjct: 5   ALYRKFRPQEFEDVKGQEHIVTTLKNQIKADRIGHAY----LFCGTRGTGKTTIAKILAR 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +         P         A+        V+ ID      +  +  I EE+ Y     
Sbjct: 61  AVNCEHPVDGSP-CNTCKTCRAINEGTSMN-VIEIDAASNNGVDNIREIREEVAYRPTTG 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++   S    I ATT    +   +  R         
Sbjct: 119 KYKVYIIDEVHMLSTGAFNALLKTLEEPPSYVIFILATTEAHKIPITILSRCQ-RYDFRR 177

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
              + +   +Q      G  V ++A   IA  + G+ R A  LL +   F
Sbjct: 178 ITADTIAARLQELMDKEGNDVEEKAIRYIAKAADGSMRDALSLLDQCIAF 227


>gi|118619468|ref|YP_907800.1| DNA polymerase III subunits gamma and tau [Mycobacterium ulcerans
           Agy99]
 gi|118571578|gb|ABL06329.1| DNA polymerase III (subunit gamma/tau) DnaZX [Mycobacterium
           ulcerans Agy99]
          Length = 621

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 49/256 (19%), Positives = 85/256 (33%), Gaps = 21/256 (8%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T  E  GQ      L + +EA +         LF GP G GKT+ A+++AR
Sbjct: 2   ALYRKYRPATFAEVVGQEHVTEPLSIALEAGRINHAY----LFSGPRGCGKTSSARILAR 57

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-DVLFIDEIHRLSIIVEEILY------PAM 129
            L    +  +           AL  +     DV+ +D      +     L       PA 
Sbjct: 58  SLNC-AQGPTATPCGTCESCQALAPSAPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQ 116

Query: 130 EDFQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
             +++ ++         G     + V+        I ATT    +   ++ R        
Sbjct: 117 SRYRVFIIDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSR-THHYPFR 175

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
                 ++ ++ R  +  G+ V +     +     G+PR    +L ++   A+  H    
Sbjct: 176 LLPRRTMRGLIGRICEQEGVVVDEAVYPLVTRAGGGSPRDTLSVLDQLVAGAQSNHVTYQ 235

Query: 242 TREIADAALLRLAIDK 257
                  A     ID 
Sbjct: 236 RVLGLLGATDVALIDD 251


>gi|325181066|emb|CCA15478.1| replication factor C subunit 4 putative [Albugo laibachii Nc14]
          Length = 333

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 76/223 (34%), Gaps = 22/223 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             I   RP+ + + + Q    + L+  I + +     L H+LF GPPG GKT+    VAR
Sbjct: 11  PWIEKYRPKVINDISHQEHVVATLRQSIASGQ-----LPHLLFYGPPGTGKTSTIVAVAR 65

Query: 77  E-------LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           E           +   +         +   +       +   + +    IIV +      
Sbjct: 66  ELYGNDFRKNGRYLELNASDDRGIKVVREKVKLFAQGAINSSESMPAFKIIVLDEADSMT 125

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAA-TTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
            D Q  L        R +  + S+ T        V  + +P+  R  +  R +    E +
Sbjct: 126 NDAQSAL--------RRMMEDYSKVTRFCLICNYVSRIIDPIASRC-VKFRFSPLTKESM 176

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
              +        L + D+    +   + G  R A  L++  R 
Sbjct: 177 AARLSYIGSQENLRLDDDIIDTLLDCANGDLRKAINLMQSARQ 219


>gi|309810107|ref|ZP_07703953.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners SPIN
           2503V10-D]
 gi|308169606|gb|EFO71653.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners SPIN
           2503V10-D]
          Length = 583

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 49/265 (18%), Positives = 97/265 (36%), Gaps = 22/265 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPRT E   GQ   C  L+     +  R +     LF GP G GKT+ A++ A+ +    
Sbjct: 11  RPRTFEAVVGQSAICDTLR----NSIKRHKISHAFLFSGPRGTGKTSCAKIFAKAINCMD 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P    +  LAA    L   D++ ID      +  +  I +++ Y   + +    +
Sbjct: 67  SKDGEPCNQCSNCLAADKGIL--NDIIEIDAASNNGVDEIRAIRDKVKYAPTQGYYKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT +  +   +  R            + L
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRI-SNDQL 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              ++       +A  +++   IA  + G  R +  +L ++  + +       T  I   
Sbjct: 184 VNRMKFILDQEKIAYDEKSLQVIAQVADGGMRDSLSILDQILSYDQAKINYKDTLAITGY 243

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIAR 273
           A  ++ I+ +  D L+ +    +  
Sbjct: 244 A-DQVKIEALFLDLLNRKTSQALEE 267


>gi|297545179|ref|YP_003677481.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296842954|gb|ADH61470.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 510

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 58/244 (23%), Positives = 89/244 (36%), Gaps = 22/244 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAA-------KARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  E    LKV I+         K  A+    +LF GPPG GKT LA  +A E 
Sbjct: 82  TFKDVAGLDEVIDELKVIIDFMTNTEKYNKMGAKIPKGILFYGPPGTGKTLLATALAGET 141

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
              F S SG           A  + AL    +     ++FIDEI  +          + +
Sbjct: 142 NSTFISASGSEFVEKYVGVGASRIRALFAKAKKSTPSIIFIDEIDAVGTKRNSD-NNSEK 200

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
           D  L+ ++ E     S +       +I AT R+ +L   L    RF   I +    ++  
Sbjct: 201 DQTLNQLLVEMDGFNSNEG----IIVIGATNRIDMLDEALLRPGRFDRTIHIGAPNMKGR 256

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             I++   +   L  T   +         T      +       A + +   I +E  D 
Sbjct: 257 LEILKVHTRNKPLDETVSLSELARKTHGMTGAHLATMCNEAAILAVMKNKSKIGKEEFDE 316

Query: 249 ALLR 252
           AL R
Sbjct: 317 ALER 320


>gi|311741093|ref|ZP_07714918.1| DNA polymerase III, gamma/tau subunit DnaX [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311303895|gb|EFQ79973.1| DNA polymerase III, gamma/tau subunit DnaX [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 787

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 83/232 (35%), Gaps = 21/232 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T  E  GQ +  + L   ++A +         LF GP G GKT+ A+++AR
Sbjct: 2   ALYRKYRPATFAEVVGQEQVTTPLSAALDAGRINHAY----LFSGPRGCGKTSSARIMAR 57

Query: 77  ELGVNFRSTSGPVIAKAGDLAALL-TNLEDRDVLFIDEIHRLSIIVEEILY------PAM 129
            L      TS P   K     +L      + DV  +D      +     L       PA 
Sbjct: 58  SLNCEHGPTSTP-CGKCDSCVSLAPGGPGNLDVTELDAASHNGVEDMRELRDRAYYAPAE 116

Query: 130 EDFQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
             +++ ++         G     + V+        I ATT    +   ++ R        
Sbjct: 117 SRYRIFIIDEAHMISPSGANALLKVVEEPPEHVIFIFATTEPEKIIGTIRSR-THHYPFR 175

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                 +K ++QR  +  G+ V D     +     G+PR    LL ++   A
Sbjct: 176 LLTPPAMKGLLQRTVESEGVQVEDAVYPMVIEAGGGSPRDTLSLLDQLLAGA 227


>gi|195135525|ref|XP_002012183.1| GI16571 [Drosophila mojavensis]
 gi|193918447|gb|EDW17314.1| GI16571 [Drosophila mojavensis]
          Length = 331

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 54/283 (19%), Positives = 98/283 (34%), Gaps = 40/283 (14%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M +  G++  +       I   RP   +E  G  +  + L VF     +      +++  
Sbjct: 1   MPEETGIVVVDKRNNLPWIEKYRPVKFDEIVGNEDTVARLSVF-----STQGNSPNIIIA 55

Query: 61  GPPGLGKTTLAQVVAR------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDR 106
           GPPG+GKTT  Q +AR            EL  +       V  K    A     L     
Sbjct: 56  GPPGVGKTTTIQCLARILLGDSYKDAVLELNASNERGIDVVRNKIKMFAQQKVTLPRGRH 115

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
            ++ +DE   ++   ++ L   ME +                 N +RF L   T+    +
Sbjct: 116 KIVILDEADSMTEGAQQSLRRTMEIYS----------------NTTRFALACNTSE--KI 157

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA-GRL 225
             P+Q R  +       + + L  +++   +L  L   ++    I   ++G  R A   L
Sbjct: 158 IEPIQSRCAMLRFSKLSDAQVLAKLIE-VCQLEQLKYDEDGLEAIVFTAQGDMRQALNNL 216

Query: 226 LRRVRDFAEVAHAKTI-TREIADAALLRLAIDKMGFDQLDLRY 267
               + F E+  A      +     LL+  +     + +   Y
Sbjct: 217 QSTAQGFGEITGANVFKVCDEPHPMLLQDMLQHCASNDIHKAY 259


>gi|327401704|ref|YP_004342543.1| Microtubule-severing ATPase [Archaeoglobus veneficus SNP6]
 gi|327317212|gb|AEA47828.1| Microtubule-severing ATPase [Archaeoglobus veneficus SNP6]
          Length = 354

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 60/240 (25%), Positives = 97/240 (40%), Gaps = 23/240 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE----ALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +L +  GQ EA   +KV +E  K   +    A  +VLF GPPG GKT  A+ +A E  V 
Sbjct: 106 SLSDVVGQEEAKRKVKVILEFLKNPEKFGKWAPRNVLFYGPPGTGKTMTAKALANEAKVP 165

Query: 82  FRSTSGPVI--AKAGDLAALLTNLEDRD------VLFIDEIH--RLSIIVEEILYPAMED 131
           F S     +     GD A  +  L +R       ++F+DE     L    +E L   + +
Sbjct: 166 FLSVKSTKLIGEHVGDGARRIHELYERARQVAPCIVFLDEFDSIALDRSYQE-LRGDVSE 224

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
               L+       R+  I       IAAT R  +L   ++ RF   I  +    E+   I
Sbjct: 225 VVNALLTELDGIQRNDGIC-----TIAATNRAEMLDASIRSRFEEEIEFSLPSYEERLEI 279

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTP--RIAGRLLRRVRDFAEVAHAKTITREIADAA 249
           +++  +   L V  +   E+A ++ G     +  ++++     A       I  E    A
Sbjct: 280 LRKNLQEFPLEVKAK-LDEVARQTEGFSGRDLVEKVIKSALHRAIAEGRDRIETEDFMKA 338


>gi|170767813|ref|ZP_02902266.1| DNA polymerase III, tau and gamma subunit [Escherichia albertii
           TW07627]
 gi|170123301|gb|EDS92232.1| DNA polymerase III, tau and gamma subunit [Escherichia albertii
           TW07627]
          Length = 640

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 53/306 (17%), Positives = 107/306 (34%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++        + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +A    A   +A  + G+ R A  L     D A  +    ++ +   A
Sbjct: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAIASGDGQVSTQAVSA 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L  D+       L  +  +    G   + +   +A      +A+   +   + +  
Sbjct: 240 MLGTLDDDQA------LSLVEAMVEANGERVMALINDAAARGIEWEALLVEMLGLLHRIA 293

Query: 309 FIQRTP 314
            +Q +P
Sbjct: 294 MVQLSP 299


>gi|225163994|ref|ZP_03726282.1| DNA-directed DNA polymerase [Opitutaceae bacterium TAV2]
 gi|224801408|gb|EEG19716.1| DNA-directed DNA polymerase [Opitutaceae bacterium TAV2]
          Length = 388

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 53/236 (22%), Positives = 87/236 (36%), Gaps = 23/236 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T ++  GQ      LK  I    AR       LFVGP G GKT+ A++ A+ L    
Sbjct: 14  RPQTFDDVVGQDHVVRTLKNAI----ARNRIAHAYLFVGPRGTGKTSTARIFAKALNCTD 69

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV-----EEILYPAMEDFQLDLM 137
                     A      +T+    DV+ ID     S+       +++ Y   +      +
Sbjct: 70  --GPKADFDPADPAVKSITDGTSMDVIEIDGASNNSVDQIRDLRDDVRYAPTQGKFKIYI 127

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        + ATT V  +   +  R          +   +
Sbjct: 128 IDEVHMLSTAAFNALLKTLEEPPEHVKFVFATTDVQKVLPTILSRCQRFDLKPIPDDLII 187

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF--AEVAHAKTIT 242
           K + Q GA    +  T EA   IA  + G  R A  +  ++  F  AE+A A  + 
Sbjct: 188 KRLAQIGADE-KINATPEALACIARMADGGMRDAQSIFDQMISFCGAEIAEADVLD 242


>gi|110003914|emb|CAK98254.1| putative dna polymerase III gamma/tau subunits protein [Spiroplasma
           citri]
          Length = 690

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 79/230 (34%), Gaps = 23/230 (10%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVAREL 78
              RP   ++  GQ+E    LK  I           H  LF GP G GKT++A++ A+ +
Sbjct: 8   RKYRPNNFDKIVGQIEIRKALKNAI-----INNTFSHAYLFSGPRGTGKTSIAKIFAKAI 62

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV------EEILYPAMEDF 132
                    P    A      +      DV  ID      +           L P M  +
Sbjct: 63  NCINLDNGNPCNECAS--CKEINRAGAVDVFEIDAASNNGVDEIREIRNNVQLLPTMTKY 120

Query: 133 QLDLMVGE--------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           ++ ++               ++++        I ATT    +   +  R          +
Sbjct: 121 KVYIIDEIHMLTNSAFNALLKTLEEPPQHVVFILATTESHKIPATIISRCQQYNFRKISK 180

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
           +E    I+    +   +     A  EIA+ + G+ R +  +L +V  F++
Sbjct: 181 VELENNIIN-ILQKEEIKYDLTAIKEIALLADGSARDSLSILEQVIMFSD 229


>gi|84996647|ref|XP_953045.1| replication factor C subunit [Theileria annulata strain Ankara]
 gi|65304041|emb|CAI76420.1| replication factor C subunit, putative [Theileria annulata]
          Length = 347

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/216 (17%), Positives = 73/216 (33%), Gaps = 11/216 (5%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP TL++     +  S L VF E  +     L H+LF GPPG GKT+    ++R
Sbjct: 8   PWVEKYRPETLQDIISHEDIMSTLMVFAEKGQ-----LPHLLFHGPPGSGKTSTILAISR 62

Query: 77  EL-----GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
            +            +         +   +    +    F   I         +    +++
Sbjct: 63  YMYGNSRNGFVLELNASDERGIDTVRDQIKAFSETSNTFTSSIPVEDPPRTNLKLIILDE 122

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
                   +    R ++I  +          +  +  P+Q R     R    + + ++  
Sbjct: 123 ADQMTNAAQNALRRIMEIYSNNVRFCLICNFMNKIIPPIQSRC-TGFRFQPLKPDVVRER 181

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
            +  AKL  + +TD A   +    +G  R     L+
Sbjct: 182 TKEIAKLENVKITDCALDALVEIGQGDMRRVLNCLQ 217


>gi|323976046|gb|EGB71139.1| DNA polymerase III [Escherichia coli TW10509]
          Length = 643

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 53/306 (17%), Positives = 107/306 (34%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++        + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +A    A   +A  + G+ R A  L     D A  +    ++ +   A
Sbjct: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAIASGDGLVSTQAVSA 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L  D+       L  +  +    G   + +   +A      +A+   +   + +  
Sbjct: 240 MLGTLDDDQA------LSLVEAMVEANGERVMSLINEAAARGIEWEALLVEMLGLLHRIA 293

Query: 309 FIQRTP 314
            +Q +P
Sbjct: 294 MVQLSP 299


>gi|307312153|ref|ZP_07591789.1| DNA polymerase III, subunits gamma and tau [Escherichia coli W]
 gi|306907655|gb|EFN38157.1| DNA polymerase III, subunits gamma and tau [Escherichia coli W]
          Length = 437

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 53/306 (17%), Positives = 107/306 (34%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++        + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +A    A   +A  + G+ R A  L     D A  +    ++ +   A
Sbjct: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAIASGDGQVSTQAVSA 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L  D+       L  +  +    G   + +   +A      +A+   +   + +  
Sbjct: 240 MLGTLDDDQA------LSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIA 293

Query: 309 FIQRTP 314
            +Q +P
Sbjct: 294 MVQLSP 299


>gi|297516879|ref|ZP_06935265.1| DNA polymerase III subunits gamma and tau [Escherichia coli OP50]
          Length = 435

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 53/306 (17%), Positives = 107/306 (34%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++        + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +A    A   +A  + G+ R A  L     D A  +    ++ +   A
Sbjct: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAIASGDGQVSTQAVSA 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L  D+       L  +  +    G   + +   +A      +A+   +   + +  
Sbjct: 240 MLGTLDDDQA------LSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIA 293

Query: 309 FIQRTP 314
            +Q +P
Sbjct: 294 MVQLSP 299


>gi|269114869|ref|YP_003302632.1| DNA polymerase III subunit gamma and tau [Mycoplasma hominis]
 gi|268322494|emb|CAX37229.1| DNA polymerase III subunit gamma and tau [Mycoplasma hominis ATCC
           23114]
          Length = 667

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 50/258 (19%), Positives = 74/258 (28%), Gaps = 53/258 (20%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     RP+  ++  GQ      LK  I         L H  LF GP G GKT+ A+V A
Sbjct: 9   ALYRKYRPKIFDDIKGQDHIVITLKNII-----LNNKLSHAYLFCGPHGNGKTSTAKVFA 63

Query: 76  RELGVNFRST----------------------SGPVIAKAGDLAALLTNLE------DRD 107
             +      +                               D+  L   ++         
Sbjct: 64  NTINCLHNQSDILKPCEECIKNVDRNLDIIEIDAASNTGIDDIRELKEKIKHLPTQSKYK 123

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           +  IDE+H LS      L   +ED                    S    I ATT    + 
Sbjct: 124 IYIIDEVHMLSKAAFNALLKTIED------------------PPSHIIFILATTDPQKIP 165

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             +  R           IE L + ++       +   D+A   IA    G+ R +  +  
Sbjct: 166 ETILSRVQ-RFNFKLMTIETLVSQLKDIFNKENIEYEDDAINVIAKLGNGSLRDSLSIAD 224

Query: 228 RVRDFAEVAHAKTITREI 245
            V  +      K    E 
Sbjct: 225 HVAIYCANKVIKKEVVEQ 242


>gi|159041324|ref|YP_001540576.1| ATPase central domain-containing protein [Caldivirga maquilingensis
           IC-167]
 gi|157920159|gb|ABW01586.1| AAA ATPase central domain protein [Caldivirga maquilingensis
           IC-167]
          Length = 318

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 57/222 (25%), Positives = 92/222 (41%), Gaps = 37/222 (16%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE- 77
           +   RP  L +   Q      L  F+     R   L H+LF GPPG+GKTT A  +ARE 
Sbjct: 1   MERFRPVRLVDLVDQEGVKVGLMEFV-----RRGDLPHLLFYGPPGVGKTTAALALAREL 55

Query: 78  LGVNFRSTSGP-----------VIAKAGDLAALL-TNLEDRDVLFIDEIHRLSIIVEEIL 125
            G ++RS+              +  K  + A  + T      ++ +DE   ++   ++ L
Sbjct: 56  YGDSWRSSVLELNASDERGIDVIREKVKEFARTIPTGPVPFKLVILDEADNMTSDAQQAL 115

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
              ME +                 + +RF L+A    +  +  P+Q R  I  R N    
Sbjct: 116 RRIMEMY----------------ASTTRFILLA--NYISGIIEPIQSRCAI-FRFNPLPK 156

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
           E +   +++ AK TG+ VT++    I   S+G  R A   L+
Sbjct: 157 EAVIERLRQIAKETGVEVTEDGLEAIWEVSQGDMRKAINTLQ 198


>gi|289578969|ref|YP_003477596.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter italicus
           Ab9]
 gi|289528682|gb|ADD03034.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter italicus
           Ab9]
          Length = 510

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 58/244 (23%), Positives = 89/244 (36%), Gaps = 22/244 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAA-------KARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  E    LKV I+         K  A+    +LF GPPG GKT LA  +A E 
Sbjct: 82  TFKDVAGLDEVIDELKVIIDFMTNTEKYNKMGAKIPKGILFYGPPGTGKTLLATALAGET 141

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
              F S SG           A  + AL    +     ++FIDEI  +          + +
Sbjct: 142 NSTFISASGSEFVEKYVGVGASRIRALFAKAKKSTPSIIFIDEIDAVGTKRNSD-NNSEK 200

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
           D  L+ ++ E     S +       +I AT R+ +L   L    RF   I +    ++  
Sbjct: 201 DQTLNQLLVEMDGFNSNEG----IIVIGATNRIDMLDEALLRPGRFDRTIHIGAPNMKGR 256

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             I++   +   L  T   +         T      +       A + +   I +E  D 
Sbjct: 257 LEILKVHTRNKPLDETVSLSELARKTHGMTGAHLATMCNEAAILAVMKNKSKIGKEEFDE 316

Query: 249 ALLR 252
           AL R
Sbjct: 317 ALER 320


>gi|149179572|ref|ZP_01858104.1| DNA polymerase III gamma and tau subunits [Planctomyces maris DSM
           8797]
 gi|148841589|gb|EDL56020.1| DNA polymerase III gamma and tau subunits [Planctomyces maris DSM
           8797]
          Length = 484

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/259 (18%), Positives = 84/259 (32%), Gaps = 53/259 (20%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           +S    Q        RP+   E  GQ      L+  I   +         LF G  G+GK
Sbjct: 1   MSSKSMQYTVLARRFRPQNFSEVVGQGMVAQALQNAIRGDRVAHAY----LFTGARGVGK 56

Query: 68  TTLAQVVARELGVNFRST------------------------SGPVIAKAGDLAALLTNL 103
           T++A+++A+ L                                G       D+ +L  N+
Sbjct: 57  TSMARILAKALNCPHTQDGIPCGECEVCQNIAVGSDVDVLEIDGASNRGIDDIRSLRANV 116

Query: 104 EDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLI 157
             R       +  IDE+H L+      L   +E+                         I
Sbjct: 117 NVRSMRSKYKIYIIDEVHMLTKEAFNALLKTLEE------------------PPPNVKFI 158

Query: 158 AATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRG 217
             TT    L + +  R        + E   +   +++ A+   ++V D+A   +A R+ G
Sbjct: 159 FCTTEPNKLPDTILSRCQ-RFDFGYIEENSICDRLKQIAEAEQVSVADDAIQLVARRAGG 217

Query: 218 TPRIAGRLLRRVRDFAEVA 236
           + R +  +  ++  F E  
Sbjct: 218 SMRDSQSIFDQLLSFGESH 236


>gi|46446112|ref|YP_007477.1| DNA polymerase III subunits gamma and tau [Candidatus
           Protochlamydia amoebophila UWE25]
 gi|46399753|emb|CAF23202.1| probable DNA-directed DNA polymerase III subunits gamma/tau dnaX
           [Candidatus Protochlamydia amoebophila UWE25]
          Length = 522

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 49/239 (20%), Positives = 88/239 (36%), Gaps = 20/239 (8%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +S+        RP+T +E  GQ    + LK  I+  +         LF G  G GKTTLA
Sbjct: 1   MSEYQVIARKFRPQTFKEVFGQEAVVTTLKNAIKFKRLAQAY----LFCGSRGTGKTTLA 56

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHR-----LSIIVEEILY 126
           ++ A+ +     +       +      + T+    DVL ID         +  I E + Y
Sbjct: 57  RIFAKAINCQNSTEDFEPCNQCTSCREI-TSGSSLDVLEIDGASHRGIEDIRQINETVGY 115

Query: 127 PAMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
            A        ++ E             ++++    +   I ATT    +   +  R    
Sbjct: 116 AATSGQYKVYIIDEVHMLTKEAFNALLKTLEEPPPKVKFIFATTEAHKVLPTILSRCQ-R 174

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
             L+   +  +   ++  A    + V +EA   +A ++ G  R A  L  ++  F+E  
Sbjct: 175 FNLSRIPLSQIMIKLKLIADQLEIDVEEEALQLLAYKAEGGLRDAESLFDQIVAFSEGK 233


>gi|303239034|ref|ZP_07325564.1| Sigma 54 interacting domain protein [Acetivibrio cellulolyticus
           CD2]
 gi|302593372|gb|EFL63090.1| Sigma 54 interacting domain protein [Acetivibrio cellulolyticus
           CD2]
          Length = 559

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 63/313 (20%), Positives = 104/313 (33%), Gaps = 57/313 (18%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD+   L R +   +      RP TL+E  GQ +    L+     A        HVL  G
Sbjct: 43  MDKLRKL-REIKLSEPLSERTRPSTLKEIVGQEQGLKALR-----AALCGPNPQHVLIYG 96

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR--------------- 106
           PPG+GKT  A+V+  E   N  S      AK  ++ A     ++R               
Sbjct: 97  PPGVGKTAAARVILDEAKQNDSSPFKKE-AKFVEVDATTLRFDERGIADPLIGSVHDPIY 155

Query: 107 ------------------------DVLFIDEIHRLSIIVEEILYPAMEDFQLDL------ 136
                                    +LF+DEI  L  I    L   +ED ++ L      
Sbjct: 156 QGAGAYGVAGIPQPKPGAATKAHGGILFLDEIGELHPIQMNKLLKVLEDRRVFLESAYYS 215

Query: 137 MVGEGPSARSVKI----NLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
              +   +   +I      + F L+ ATTR             + I        +++ I 
Sbjct: 216 SEDKNIPSHIHEIFQKGLPADFRLVGATTRTADEIPAAIRSRCVEIYFRPLMAGEVREIA 275

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           +  A+  G  + D    E+  +   + R A  +++     A V     I R   +  +  
Sbjct: 276 KNAAQKGGFILED-GGDELIAKYAQSGRDAVNIVQIAGGVALVEDRGLIKRTDIEWVIEF 334

Query: 253 LAIDKMGFDQLDL 265
              +     ++D 
Sbjct: 335 GKYNPRIDKKVDK 347


>gi|332295102|ref|YP_004437025.1| DNA polymerase III, subunits gamma and tau [Thermodesulfobium
           narugense DSM 14796]
 gi|332178205|gb|AEE13894.1| DNA polymerase III, subunits gamma and tau [Thermodesulfobium
           narugense DSM 14796]
          Length = 493

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 50/255 (19%), Positives = 82/255 (32%), Gaps = 51/255 (20%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +      RP T ++  GQ    + L    E A    +     LF G  G GKTT A++ A
Sbjct: 2   EVLYRKYRPITFDDMIGQDVVKTVL----ENASKLDDPPHVYLFAGMRGTGKTTAARIFA 57

Query: 76  RELGV----------------------NFRSTSGPVIAKAGDLAALLTNL------EDRD 107
           + L                        ++        +   D  +L              
Sbjct: 58  KALNCTSEGKKPCLNCESCKKFLEGSLDYVEIDAATHSSVDDARSLREMALIAPMSSKYR 117

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           +  IDE+HRLS    + L           ++ E P              I ATT    + 
Sbjct: 118 IFVIDEVHRLSPSAFDALLK---------IIEEPPPFSIF---------IFATTEPHKVP 159

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             +  R  + +  +    E L + + + A L G  +       IA RS G+ R +   L+
Sbjct: 160 KTILSRV-LRLDFSPINPELLASYLDKIANLEGYKLEKNLLLAIARRSEGSVRDSLSFLQ 218

Query: 228 RVRDFAEVAHAKTIT 242
           ++    E  +  T  
Sbjct: 219 QIFMLFEKKNLSTRD 233


>gi|331083246|ref|ZP_08332359.1| hypothetical protein HMPREF0992_01283 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330404327|gb|EGG83872.1| hypothetical protein HMPREF0992_01283 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 538

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 80/230 (34%), Gaps = 21/230 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP+  E+  GQ    + LK  I+A +         LF G  G GKTT+A+++AR
Sbjct: 5   ALYRKFRPQEFEDVKGQEHIVTTLKNQIKADRIGHAY----LFCGTRGTGKTTIAKILAR 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +         P         A+        V+ ID      +  +  I EE+ Y     
Sbjct: 61  AVNCEHPVDGSP-CNTCKTCRAINEGTSMN-VIEIDAASNNGVDNIREIREEVAYRPTTG 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++   S    I ATT    +   +  R         
Sbjct: 119 KYKVYIIDEVHMLSTGAFNALLKTLEEPPSYVIFILATTEAHKIPITILSRCQ-RYDFRR 177

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
              + +   +Q      G  V ++A   IA  + G+ R A  LL +   F
Sbjct: 178 ITADTIAARLQELMDKEGNDVEEKAIRYIAKAADGSMRDALSLLDQCIAF 227


>gi|320534453|ref|ZP_08034929.1| hypothetical protein HMPREF9057_02827 [Actinomyces sp. oral taxon
          171 str. F0337]
 gi|320133335|gb|EFW25807.1| hypothetical protein HMPREF9057_02827 [Actinomyces sp. oral taxon
          171 str. F0337]
          Length = 220

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 8/70 (11%)

Query: 22 LRPRTLEEFTGQVEAC---SNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
          +RPRTL++  GQ       + L   + + +     L  ++  GPPG GKTT+A+++A   
Sbjct: 1  MRPRTLDDVVGQDHLLALDAPLGRMVASGR-----LSSIILWGPPGCGKTTVARLLADRT 55

Query: 79 GVNFRSTSGP 88
          G+ F   S  
Sbjct: 56 GLVFEQVSAT 65


>gi|89100953|ref|ZP_01173799.1| DnaX [Bacillus sp. NRRL B-14911]
 gi|89084324|gb|EAR63479.1| DnaX [Bacillus sp. NRRL B-14911]
          Length = 564

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 58/298 (19%), Positives = 107/298 (35%), Gaps = 36/298 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+   +  GQ      L    + A  + +A    LF GP G GKT+ A+++A+ +    
Sbjct: 11  RPQQFIDVVGQEHVTKTL----QNALLQQKASHAYLFSGPRGTGKTSAAKILAKTVNCER 66

Query: 83  RSTSGPVIAKAGDLAAL--LTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLD 135
                P+     +  +   +TN    DV+ ID      +  +  I +++ Y         
Sbjct: 67  ----APISEPCNECDSCIGITNGSIPDVIEIDAASNNGVEEIRDIRDKVKYAPSAVKYKV 122

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            +V E             ++++        I ATT    +   +  R            +
Sbjct: 123 YIVDEVHMLSIGAFNALLKTLEEPPKHVMFILATTEPHKIPLTIISRCQ-RFDFKRITAQ 181

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
            +   ++     TG+   + A   +A  + G  R A  LL +   F++        +  A
Sbjct: 182 SIVGRMKMIVDETGVQYEENALHIVARAAEGGMRDALSLLDQAISFSQ-------DKVTA 234

Query: 247 DAALLRLAIDKMGF-DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           + AL        GF ++L    +    ++  G    +ET+     +P   IED I  Y
Sbjct: 235 EDALTVTGAVSQGFLNKLSRNVME---KDAAGALEALETLLFQGKDPSRFIEDFILYY 289


>gi|300987929|ref|ZP_07178445.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS
           45-1]
 gi|300407599|gb|EFJ91137.1| DNA polymerase III, subunit gamma and tau [Escherichia coli MS
           45-1]
          Length = 449

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 53/306 (17%), Positives = 107/306 (34%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++        + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +A    A   +A  + G+ R A  L     D A  +    ++ +   A
Sbjct: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAIASGDGQVSTQAVSA 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L  D+       L  +  +    G   + +   +A      +A+   +   + +  
Sbjct: 240 MLGTLDDDQA------LSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIA 293

Query: 309 FIQRTP 314
            +Q +P
Sbjct: 294 MVQLSP 299


>gi|213966429|ref|ZP_03394606.1| DNA polymerase III subunit gamma/tau [Corynebacterium amycolatum
           SK46]
 gi|213950922|gb|EEB62327.1| DNA polymerase III subunit gamma/tau [Corynebacterium amycolatum
           SK46]
          Length = 944

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 51/262 (19%), Positives = 94/262 (35%), Gaps = 31/262 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEA--AKARAEALDHV-LFVGPPGLGKTTLAQV 73
           A     RP +  E  GQ      L   +E+  A+ R   ++H  LF GP G GKT+ A++
Sbjct: 2   ALYRKYRPASFAEVVGQRHVTDPLSAALESRDAQGRPNRINHAYLFSGPRGCGKTSSARI 61

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDR----DVLFIDEIHRLSIIVEEILY--- 126
           +AR L        GP     G  A+            DV+ +D      +     L    
Sbjct: 62  MARSLNC----AEGPTATPCGQCASCRALAPGGPGNLDVIELDAASHNGVEDMRELREKA 117

Query: 127 ---PAMEDFQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
              PA   +++ ++         G     + V+        I ATT    +   ++ R  
Sbjct: 118 IFQPAESRYRIFIIDEAHMITASGFNALLKIVEEPPEHLIFIFATTEPERVLPTIRSR-T 176

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
                      D++ +++R     G+ V  +    +     G+PR +  ++ ++     +
Sbjct: 177 HHYPFRLLTPPDMRGLLERVVTAEGVRVEPDVYPLVIQAGGGSPRDSLSVMDQL-----I 231

Query: 236 AHAKTITREIADAALLRLAIDK 257
           A + T   +   +A +    D 
Sbjct: 232 AGSGTDGVDYETSAAILGVTDS 253


>gi|297797479|ref|XP_002866624.1| AAA-type ATPase family protein [Arabidopsis lyrata subsp. lyrata]
 gi|297312459|gb|EFH42883.1| AAA-type ATPase family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 855

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 59/250 (23%), Positives = 93/250 (37%), Gaps = 23/250 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE-------ALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++F GQ      L+  +   K   E           VL  GPPG GKT LA+ +A E 
Sbjct: 314 TFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA 373

Query: 79  GVNFRSTSGP---------VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           G+ F + +G            ++  DL A   +     ++FIDEI  +            
Sbjct: 374 GLPFFAANGTDFVEMFVGVAASRVKDLFASSRSYAP-SIIFIDEIDAIGSKRGGPDIGGG 432

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
              +   ++         K+  S+  +I AT R+ +L   L    RF   IR+     + 
Sbjct: 433 GAEREQGLLQILTEMDGFKVTTSQVLVIGATNRLDILDPALLRKGRFDKIIRVGLPSKDG 492

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT----ITR 243
              I++  A+       DE    +   +  T    G  L+ V + A +  A+     I R
Sbjct: 493 RLAILKVHARNKFFRSEDEKEELLQEVAENTEDFTGAELQNVLNEAGILTARKDLDYIGR 552

Query: 244 EIADAALLRL 253
           E    AL R 
Sbjct: 553 EELLEALKRQ 562


>gi|226354984|ref|YP_002784724.1| DNA polymerase III subunits gamma and tau [Deinococcus deserti
           VCD115]
 gi|226316974|gb|ACO44970.1| putative DNA polymerase III, subunits gamma and tau [Deinococcus
           deserti VCD115]
          Length = 762

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 80/223 (35%), Gaps = 26/223 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP   +E  GQ      L+  +E  +         LF GP G+GKTT A+++A       
Sbjct: 9   RPIRWDEVVGQEHVKDVLRAALEQGRVGHAY----LFSGPRGVGKTTTARLIAMTANC-- 62

Query: 83  RSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSII-----VEEILYPAMEDFQLD 135
              SGP+    G+  + L        DVL ID     S+       E++   AM   +  
Sbjct: 63  ---SGPLPKPCGECESCLSVRAGSHPDVLEIDAASNNSVDDVRDLREKVSLAAMRGGKKI 119

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             ++++   S    I ATT    +   +  R     R      E
Sbjct: 120 YILDEAHMMSRAAFNALLKTLEEPPSHVIFILATTEPEKIIPTILSRCQ-HYRFRRLTAE 178

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           ++   +   A   G+    +A   I   + G  R    LL R+
Sbjct: 179 EIAGKLSGLAAKEGVRAEPDALQLIGRLADGAMRDGESLLERM 221


>gi|187735722|ref|YP_001877834.1| DNA polymerase III, subunits gamma and tau [Akkermansia muciniphila
           ATCC BAA-835]
 gi|187425774|gb|ACD05053.1| DNA polymerase III, subunits gamma and tau [Akkermansia muciniphila
           ATCC BAA-835]
          Length = 732

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 81/246 (32%), Gaps = 55/246 (22%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARE 77
               RP T ++  GQ      LK  IE        L H  LFVGP G GKT+ A++ A+ 
Sbjct: 7   ARKYRPLTFDDVLGQDHVVRTLKNAIE-----HNRLAHAYLFVGPRGTGKTSTARIFAKA 61

Query: 78  LGVN------------------------FRSTSGPVIAKAGDLAALLTNL------EDRD 107
           L  +                             G        +  L  N+       +  
Sbjct: 62  LNCSGGPKVDFDPHEDICEEIAEGRSLDVLEIDGASNRGIDHIRDLRDNVRFAPSRGNFR 121

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           +++IDE+H L+      L   +E+                         I ATT    + 
Sbjct: 122 IVYIDEVHMLTKESFNALLKTLEE------------------PPPHVKFIFATTEPHKIL 163

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             +  R      L     E +   +   A   G++++ EAA  +A  + G  R A  +L 
Sbjct: 164 PTILSRCQ-RFDLRPIPSEIIAEHLLHIASAEGVSLSREAAFAVAKVADGGMRDAQSMLD 222

Query: 228 RVRDFA 233
           ++  F 
Sbjct: 223 QLVSFC 228


>gi|319950448|ref|ZP_08024362.1| DNA polymerase III subunits gamma and tau [Dietzia cinnamea P4]
 gi|319435871|gb|EFV91077.1| DNA polymerase III subunits gamma and tau [Dietzia cinnamea P4]
          Length = 414

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/239 (17%), Positives = 76/239 (31%), Gaps = 27/239 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP +  E  GQ      L V + + +         LF GP G GKT+ A+++AR
Sbjct: 2   ALYRKYRPASFAEVVGQEHVTEPLSVALSSGRINHAY----LFSGPRGCGKTSSARILAR 57

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR----DVLFID-----EIHRLSIIVEEILYP 127
            L        GP     G+  + +          DV  +D      +     + E   + 
Sbjct: 58  SLNC----VHGPTATPCGECDSCVALAPGGNGTLDVTELDAASHGGVDDTRDLRERAFFA 113

Query: 128 AMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
                   L++ E             + V+        I ATT    +   ++ R     
Sbjct: 114 PASSRYRVLIIDEAHMVTNAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSR-THHY 172

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                    ++ +++R     G+ V       +     G+PR    +L ++   A    
Sbjct: 173 PFRLLTPSSMRGLLERICDQEGVKVEPTVFPLVIRAGGGSPRDTLSVLDQLMAGAGEEG 231


>gi|309803539|ref|ZP_07697632.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners
           LactinV 11V1-d]
 gi|308164423|gb|EFO66677.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners
           LactinV 11V1-d]
          Length = 583

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 49/265 (18%), Positives = 97/265 (36%), Gaps = 22/265 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPRT E   GQ   C  L+     +  R +     LF GP G GKT+ A++ A+ +    
Sbjct: 11  RPRTFEAVVGQSAICDTLR----NSIKRHKISHAFLFSGPRGTGKTSCAKIFAKAINCMD 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P    +  LAA    L   D++ ID      +  +  I +++ Y   + +    +
Sbjct: 67  SKDGEPCNQCSNCLAADKGIL--NDIIEIDAASNNGVDEIRAIRDKVKYAPTQGYYKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT +  +   +  R            + L
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRI-SNDQL 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              ++       +A  +++   IA  + G  R +  +L ++  + +       T  I   
Sbjct: 184 VNRMKFILDQEKIAYDEKSLQVIAQVADGGMRDSLSILDQILSYDQAKINYKDTLAITGY 243

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIAR 273
           A  ++ I+ +  D L+ +    +  
Sbjct: 244 A-DQVKIEALFLDLLNRKTSQALEE 267


>gi|289649552|ref|ZP_06480895.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv.
           aesculi str. 2250]
          Length = 741

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 66/324 (20%), Positives = 98/324 (30%), Gaps = 57/324 (17%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPR+  E  GQ      LK  I A    ++ L H  LF G  G+GKTT+A+++A+ L   
Sbjct: 11  RPRSFREMVGQAHV---LKALINA--LDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNCE 65

Query: 82  FRSTS------------------------GPVIAKAGDLAALLTNLE------DRDVLFI 111
              TS                             K  D   LL N++         V  I
Sbjct: 66  TGITSTPCGTCSVCKEIDEGRFVDLIEIDAASRTKVEDTRELLDNVQYAPSRGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         I ATT    L   + 
Sbjct: 126 DEVHMLSSHSFNALLKTLEE------------------PPPYVKFILATTDPQKLPATIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L     E +   +     +  +   D+A   +   + G+ R A  L  +   
Sbjct: 168 SRC-LQFSLKNMTPERVVEHLTHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAIA 226

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMG--FDQLDLRYLTMIARNFGGGPVGIETISAGL 289
           F E     T  R +          D +    +      L  +      GP     +S  L
Sbjct: 227 FGEGKVMATDVRAMLGTLDHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGVLSEIL 286

Query: 290 SEPRDAIEDLIEPYMIQQGFIQRT 313
           +           P  +  G   R 
Sbjct: 287 NVLHRVAIAQALPEGVDNGHGDRD 310


>gi|326427125|gb|EGD72695.1| replication factor C subunit 2 [Salpingoeca sp. ATCC 50818]
          Length = 324

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 52/257 (20%), Positives = 88/257 (34%), Gaps = 40/257 (15%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   +   RP+ L++  G  E    LKV  EA       + +++  GPPG GKTT    +
Sbjct: 2   ETPWVEKYRPKVLKDIVGNEETVDRLKVIAEAG-----NMPNLIIAGPPGTGKTTSILCL 56

Query: 75  ARELGVNFRSTSGPVIAKAGDLAAL---LTNLE------------DRDVLFIDEIHRLSI 119
           AR L          +   A D   +     N++               ++ +DE+  ++ 
Sbjct: 57  ARALLGEDVYKEAVMETNASDDRGIEVVRNNIKMFSRKKVTLPPGRHKIVILDEVDSMTS 116

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
             ++ L   ME +                 N +RF L   T+    +  P+Q R  +   
Sbjct: 117 AAQQALRRTMEMY----------------ANTTRFALACNTSE--KIIEPIQSRCAVLRY 158

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA-GRLLRRVRDFAEVAHA 238
               + + LK +++       +   +E    I   ++G  R A   L      F  V   
Sbjct: 159 TRLSDAQLLKRLLE-ICDQEMVPKVEEGLEAIIFTAQGDMRQAINNLQSTYAGFGMVNAE 217

Query: 239 KTITREIADAALLRLAI 255
                      LL  AI
Sbjct: 218 NVFKVCDQPHPLLVQAI 234


>gi|320449175|ref|YP_004201271.1| DNA polymerase III holoenzyme subunit tau [Thermus scotoductus
           SA-01]
 gi|320149344|gb|ADW20722.1| DNA polymerase III holoenzyme, subunit tau [Thermus scotoductus
           SA-01]
          Length = 492

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 50/234 (21%), Positives = 70/234 (29%), Gaps = 51/234 (21%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A    +RP T EE  GQ      L   I   +         LF GP G+GKTT A+++A 
Sbjct: 3   ALYRRVRPLTFEELVGQEHVKEPLVRAIREGRLAQAY----LFSGPRGVGKTTTARLLAM 58

Query: 77  ELGVN----------------------FRSTSGPVIAKAGDLAALLTNL------EDRDV 108
            +G                                     D+  L   +        R V
Sbjct: 59  AVGCQGAERPCGVCAHCQAVQKGAHPDVVEIDAASNNSVEDVRELRERILLAPLSAPRKV 118

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
             +DE H LS      L   +E+                         I ATT    +  
Sbjct: 119 FILDEAHMLSKSAFNALLKTLEE------------------PPPHVLFIFATTEPERMPP 160

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
            +  R     R      E++   +QR  K  G    ++A   +A  S G  R A
Sbjct: 161 TILSRTQ-HYRFRRLTEEEIAFKLQRILKEMGREAEEDALLLVARISDGALRDA 213


>gi|224084964|ref|XP_002307456.1| predicted protein [Populus trichocarpa]
 gi|222856905|gb|EEE94452.1| predicted protein [Populus trichocarpa]
          Length = 342

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 50/242 (20%), Positives = 81/242 (33%), Gaps = 46/242 (19%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           ++  +      +   RP+ +++   Q E    L   +E A        H+LF GPPG GK
Sbjct: 1   MAPLLQSSQQWVEKYRPKQIKDVAHQDEVVRVLTNTLETA-----NCPHMLFYGPPGTGK 55

Query: 68  TTLAQVVAR-------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------- 106
           TT A  +A              EL  +       V  K  D AA+      R        
Sbjct: 56  TTTALAIAHQLYGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSGQRQGVYPCPP 115

Query: 107 -DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
             ++ +DE   ++   +  L   ME +                  ++RF  I     +  
Sbjct: 116 YKIIILDEADSMTEDAQNALRRTMETYS----------------KVTRFFFIC--NYISR 157

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           +  PL  R     R      E +   +       GL +  EA   ++  S+G  R A   
Sbjct: 158 IIEPLASRCA-KFRFKPLPEEIMSNRILHICNEEGLTLDTEALSTLSSVSQGDLRRAITY 216

Query: 226 LR 227
           L+
Sbjct: 217 LQ 218


>gi|330845966|ref|XP_003294831.1| replication factor C subunit [Dictyostelium purpureum]
 gi|325074630|gb|EGC28646.1| replication factor C subunit [Dictyostelium purpureum]
          Length = 344

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 73/223 (32%), Gaps = 14/223 (6%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +  +S  RP+T+++ + Q +  S LK  +         L H+LF GPPG GKT+    +A
Sbjct: 11  EPWVSKYRPKTMDDVSYQDDVVSALKKSLSTG-----NLPHLLFYGPPGTGKTSTILAIA 65

Query: 76  RE------LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
            +      +       +         +   + N     V     +   +          +
Sbjct: 66  MDIYGPELIKQRVLELNASDERGIEIVRTKIKNFAGFTVN--KTVSNGNNAGATFKLIIL 123

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           ++        +    R+++              +  + +PL  R     R    + E   
Sbjct: 124 DEADSMTSDAQAALRRTIETTSKTTRFCLLCNYISRIIDPLASRCA-KFRFKPLDSEATI 182

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
             ++  +   G+  TD     I   S G  R A   L+    F
Sbjct: 183 ERLKYISIQEGIKCTDSVYQAIQTVSDGDMRKAITYLQSAFRF 225


>gi|309355098|emb|CAP39475.2| hypothetical protein CBG_22959 [Caenorhabditis briggsae AF16]
          Length = 551

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 73/217 (33%), Gaps = 32/217 (14%)

Query: 3   DREGLL-SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           D E +L S  V      +   RP  L E     +    L  FIE        L H+LF G
Sbjct: 212 DFERMLPSTTVVSNLPWVEKYRPSKLNELVAHEQVVKTLTKFIE-----NRTLPHLLFYG 266

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAAL------------------LTNL 103
           PPG GKTT     AR++    + +S  +   A D   +                    + 
Sbjct: 267 PPGTGKTTTVLAAARKMYHPSKMSSMVLELNASDERGIDVVRNTIVNFAQTKGLQAFASA 326

Query: 104 EDRD-----VLFIDEIHRLSIIVEEILYPAMEDFQ--LDLMVGEGPSARSVKINLSRFTL 156
            D+D     ++ +DE   ++   +  L   +E +   +   +     A  +    SR T 
Sbjct: 327 SDKDSVPFKLVILDEADAMTKDAQNALRRVIEKYTDNVRFCIICNYLASIIPAIQSRCTR 386

Query: 157 IAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
                    L  P  D F +         +  + +++
Sbjct: 387 FRFAPLDQSLIVPRLD-FIVKSEGLQMTPDGREALLR 422


>gi|150021275|ref|YP_001306629.1| DNA polymerase III, subunits gamma and tau [Thermosipho
           melanesiensis BI429]
 gi|149793796|gb|ABR31244.1| DNA polymerase III, subunits gamma and tau [Thermosipho
           melanesiensis BI429]
          Length = 460

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 83/248 (33%), Gaps = 53/248 (21%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +      RP+   E  GQ       K+F+ + K + E     +F GP G GKTT+A+++A
Sbjct: 2   ETLYRKYRPKKFLELVGQSHVK---KLFVNSLKNK-EISHAYIFAGPRGTGKTTVARILA 57

Query: 76  RELGVNFRST------------------------SGPVIAKAGDLAALL------TNLED 105
           + L                                        ++  +       T    
Sbjct: 58  KSLNCENPQEIEPCNMCNACISIDKGNFMDVLELDAASNRGIDEIRKIRETVNYHTAQGK 117

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
             V  IDE H L+      L   +E+                    S    I ATT    
Sbjct: 118 YKVYIIDEAHMLTKEAFNALLKTLEE------------------PPSNVVFILATTNPEK 159

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           +   +  R  +    N    + +K  ++   +  G+ ++ EA  EI+ R+ G  R A  +
Sbjct: 160 IPQTIISRCQVIDFKNISNKDIIKR-LEFVCENEGIKISHEAIVEISKRANGGLRDALTI 218

Query: 226 LRRVRDFA 233
           L +V + A
Sbjct: 219 LEQVINSA 226


>gi|225850089|ref|YP_002730323.1| DNA polymerase III, subunits gamma and tau [Persephonella marina
           EX-H1]
 gi|225646125|gb|ACO04311.1| DNA polymerase III, subunits gamma and tau [Persephonella marina
           EX-H1]
          Length = 479

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/252 (18%), Positives = 78/252 (30%), Gaps = 55/252 (21%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVV 74
           +A     RP+  E+  GQ      LK  IE      E + H  +F G  GLGKTT+++++
Sbjct: 4   EAFARKYRPKNFEQVIGQESVVKTLKNAIEL-----ERISHAYIFAGSRGLGKTTVSRIL 58

Query: 75  ARELGVN------------------------FRSTSGPVIAKAGDLAALLTNL------E 104
            + L                                        D+ +L  N+       
Sbjct: 59  TKSLNCEKGVTPQPCGKCENCVEIEKGSFPDMYEIDAASNRGIDDIRSLRDNVNYAPIKG 118

Query: 105 DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164
              V  IDE H L+      L   +E+                         I ATT + 
Sbjct: 119 RYKVYIIDEAHMLTREAFNALLKTLEE------------------PPPHNIFILATTELH 160

Query: 165 LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGR 224
            + + ++ R              +K  ++R      +   + A   +A  S G  R +  
Sbjct: 161 KIPDTIRSRCQ-TFIFRPPTSSQIKEYLKRILNEEKIEYEERALDLLAEASEGGIRDSAS 219

Query: 225 LLRRVRDFAEVA 236
           LL +   F +  
Sbjct: 220 LLDQAVTFGKGK 231


>gi|297693131|ref|XP_002823877.1| PREDICTED: replication factor C subunit 5-like isoform 1 [Pongo
           abelii]
          Length = 340

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 74/225 (32%), Gaps = 38/225 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA- 75
             +   RP+TL +     +  S ++ FI       + L H+L  GPPG GKT+     A 
Sbjct: 21  PWVEKYRPQTLNDLISHQDILSTIQKFI-----IEDRLPHLLLYGPPGTGKTSTILACAK 75

Query: 76  -----RELGVNFRSTSGPVIAKAGDLAA-LLTNLEDRDVL-------FIDEIHRLSIIVE 122
                +E G      +         +   +L+    R +         +DE   ++   +
Sbjct: 76  QLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQ 135

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             L   +E F       E      +   LS+                LQ R     R   
Sbjct: 136 NALRRVIEKF------TENTRFCLICNYLSKIIP------------ALQSRC-TRFRFGP 176

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
              E +   ++   +   + V+++    +   S G  R A  +L+
Sbjct: 177 LTPELMVPRLEHVVEEEKVDVSEDGMKALVTLSSGDMRRALNILQ 221


>gi|296332940|ref|ZP_06875398.1| DNA polymerase III subunits gamma and tau [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305672717|ref|YP_003864388.1| DNA polymerase III subunits gamma and tau [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296149904|gb|EFG90795.1| DNA polymerase III subunits gamma and tau [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305410960|gb|ADM36078.1| DNA polymerase III subunits gamma and tau [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 563

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 58/316 (18%), Positives = 109/316 (34%), Gaps = 36/316 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RP+  E+  GQ      L    + A  + +     LF GP G GKT+ A++ A+
Sbjct: 5   ALYRVFRPQRFEDVVGQEHITKTL----QNALLQKKFSHAYLFSGPRGTGKTSAAKIFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAAL--LTNLEDRDVLFID-----EIHRLSIIVEEILYPAM 129
            +         PV     + AA   +TN    DV+ ID      +  +  I +++ +   
Sbjct: 61  AVNCEH----APVDEPCNECAACKGITNGSISDVIEIDAASNNGVDEIRDIRDKVKFAPS 116

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                  ++ E             ++++        I ATT    +   +  R       
Sbjct: 117 AVTYKVYIIDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLTIISRCQ-RFDF 175

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
                + +   + +  +   L V + +   IA  + G  R A  LL +   F+     K 
Sbjct: 176 KRITSQAIVGRMNKIVEAEQLQVEEGSLDIIASAADGGMRDALSLLDQAVSFSGDV-LKV 234

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
               +   A+ +L I K+     D      +          +  +     +P   IED+I
Sbjct: 235 EDALLITGAVSQLYIGKLAQSLHDKNVSDALET--------LNELLQQGKDPAKLIEDMI 286

Query: 301 EPYMIQQGFIQRTPRG 316
             +  +   + +T  G
Sbjct: 287 FYF--RDMLLYKTAPG 300


>gi|303235528|ref|ZP_07322137.1| DNA polymerase III, subunit gamma and tau [Prevotella disiens
           FB035-09AN]
 gi|302484265|gb|EFL47251.1| DNA polymerase III, subunit gamma and tau [Prevotella disiens
           FB035-09AN]
          Length = 596

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/230 (15%), Positives = 84/230 (36%), Gaps = 20/230 (8%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP +     GQ    + L   ++  K         LF GP G+GKTT A++ A+ +
Sbjct: 8   ARKYRPMSFASVVGQQALTTTLMNAVKNGKLAHAY----LFCGPRGVGKTTCARIFAKTI 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI------IVEEILYPAMEDF 132
                +  G    +     +        ++  +D     S+      + +  + P +  +
Sbjct: 64  NCEHPTAEGEACNECESCKS-FDEGRSYNIFELDAASNNSVENIKSLMEQTRIPPQLGKY 122

Query: 133 QLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           ++ ++               ++++   +    I ATT    +   +  R  I        
Sbjct: 123 KVFIIDEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQIYDFERM-S 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
           ++ +   +++ A+  G+   ++A   IA ++ G  R A  +  +   F++
Sbjct: 182 VQGIINHLKQVAEKEGIKYEEQALNVIAEKADGGMRDALSIFDQAASFSQ 231


>gi|160945467|ref|ZP_02092693.1| hypothetical protein FAEPRAM212_02992 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443198|gb|EDP20203.1| hypothetical protein FAEPRAM212_02992 [Faecalibacterium prausnitzii
           M21/2]
          Length = 628

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/235 (20%), Positives = 81/235 (34%), Gaps = 21/235 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  E+  GQ    + LK  I A +         LF G  G GKTT A++ A+ +    
Sbjct: 10  RPQRFEDVVGQRAIVTALKNQITAGRVGHAY----LFTGVRGTGKTTCAKIFAKAVNCLH 65

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P      ++   + N    DV+ +D      +  +  + +E  Y          +
Sbjct: 66  PVNGDP--CGECEICKGIDNGSLLDVVEMDAASNNGVDDIRDLRDETAYTPSACQYKVYI 123

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++   +    I ATT +  +   +  R            ED+
Sbjct: 124 IDEVHMLSTAAFNALLKTLEEPPAHVIFILATTEIQKVPATILSRCQRYDFTRI-GPEDI 182

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
              V+  A    L +T + A  IA  + G  R A  +L           A  + R
Sbjct: 183 ARRVEYIAGEEKLELTSDGAELIARLADGALRDALSILDTCAGVTAKIDADVVRR 237


>gi|85057397|ref|YP_456313.1| DNA polymerase III, gamma/tau subunit [Aster yellows witches'-broom
           phytoplasma AYWB]
 gi|84789502|gb|ABC65234.1| DNA polymerase III, gamma/tau subunit [Aster yellows witches'-broom
           phytoplasma AYWB]
          Length = 653

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 50/243 (20%), Positives = 81/243 (33%), Gaps = 54/243 (22%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARE- 77
              RP+T  +  GQ      LK  I     R + ++H  LF G  G GKTTLA++ A+  
Sbjct: 8   RKYRPQTFADVVGQEIIIQTLKNAI-----RYQKINHCYLFSGNKGTGKTTLAKIFAKAI 62

Query: 78  -----------LGVNFRSTSGPV-----------------IAKAGDLAALLTNLEDRDVL 109
                         +F                        I +  D A    +     V 
Sbjct: 63  NCLSPIQGEAFCSCHFCQNFAKANTDITEIDGASYNGVDEIRELQDKAQYKAHAGKYKVY 122

Query: 110 FIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
            IDE+H L+      L   +E+                         I  TT +  + + 
Sbjct: 123 IIDEVHVLTPNAFNALLKILEE------------------PPEHVVFILITTEIYKIPDT 164

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           +  R           ++++   + + A L  + +T++A   IA  S G  R A  LL +V
Sbjct: 165 IFSRSQ-SFAFENLNLKNITAQLTKIAALENMFITEDAIKSIAYHSEGGMRNALSLLDQV 223

Query: 230 RDF 232
             +
Sbjct: 224 SAY 226


>gi|150402945|ref|YP_001330239.1| ATPase central domain-containing protein [Methanococcus maripaludis
           C7]
 gi|150033975|gb|ABR66088.1| AAA ATPase central domain protein [Methanococcus maripaludis C7]
          Length = 371

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 53/246 (21%), Positives = 99/246 (40%), Gaps = 17/246 (6%)

Query: 25  RTLEEFTGQVEACSNLKVFI---EAAKARAE-ALDHVLFVGPPGLGKTTLAQVVARELGV 80
              EE  GQ++A    K+ I   E  +   E A  ++LF GPPG GKT LA+ +A E  V
Sbjct: 123 TNFEEVIGQLDAKKKCKIVIKYLENPEIFGEWAPKNILFYGPPGTGKTMLARALATETEV 182

Query: 81  NFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDF 132
                    +        +  + +L  +  +    ++FIDE+  +++  +          
Sbjct: 183 PLYLIKATELIGDHVGDGSKQIESLYESASENTPCIIFIDELDAIALSRQFQSLRGDVSE 242

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            ++ ++ E      +K NL   T IAAT    +L N ++ RF   I     +  +   I+
Sbjct: 243 VVNALLTELDG---IKNNLGIVT-IAATNNPEMLDNAVRSRFEEEIEFKMPDDNERLKIL 298

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPR-IAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           +   K   + V  +    +        R I  + L+     A +   ++I  +  D  + 
Sbjct: 299 ELYVKKMPITVNADLKKYVEKTKGMNGRTIKEKFLKPALHKAILEDNESIEEKDLDEIIK 358

Query: 252 RLAIDK 257
           +L  ++
Sbjct: 359 KLVRNQ 364


>gi|266621803|ref|ZP_06114738.1| DNA polymerase III, gamma and tau subunit [Clostridium hathewayi
           DSM 13479]
 gi|288866492|gb|EFC98790.1| DNA polymerase III, gamma and tau subunit [Clostridium hathewayi
           DSM 13479]
          Length = 540

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 87/227 (38%), Gaps = 27/227 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP + E+  GQ      LK      +  ++ + H  LF G  G GKT++A++ A+ +   
Sbjct: 11  RPASFEDVRGQDHVVQTLK-----NQMVSDRIGHAYLFCGTRGTGKTSIAKIFAKAVNCE 65

Query: 82  FRSTSGPVIAKAGDLA--ALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQL 134
                 P     G+      +      +V+ ID      +  +  I +E+ YP  E    
Sbjct: 66  SPVDGSP----CGECRTCKNIAAGSSLNVVEIDAASNNGVENIREIRDEVQYPPTEGKYR 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             ++ E             ++++   S    I ATT V  +   +  R           +
Sbjct: 122 VYIIDEVHMLSTGAFNALLKTLEEPPSYVIFILATTEVQKIPVTVMSRCQRYDFKRI-TV 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           + + T +Q+  +   ++V D+A   IA  + G  R A  LL +   F
Sbjct: 181 DTIVTHLQKLTEAEHISVEDKALAYIAKAADGAMRDALSLLDQCVAF 227


>gi|222530074|ref|YP_002573956.1| DNA polymerase III subunits gamma and tau [Caldicellulosiruptor
           bescii DSM 6725]
 gi|222456921|gb|ACM61183.1| DNA polymerase III, subunits gamma and tau [Caldicellulosiruptor
           bescii DSM 6725]
          Length = 534

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 90/234 (38%), Gaps = 21/234 (8%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP+  E+   Q      LK  I+  K         +F GP G GKTT A++++R
Sbjct: 4   ALYRKYRPKVFEDVVAQEHITRTLKNQIKQDKVAHAY----IFCGPRGTGKTTTAKIMSR 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII-----VEEILYPAMED 131
            +         P   +     ++L   +  DVL ID     S+       +E+ YP    
Sbjct: 60  AVNCLNPKDGNP-CNECEICRSILDE-KTLDVLEIDAASNTSVNDVRQIRDEVRYPPSVC 117

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
            +   ++ E             ++++   S    I ATT +  +   +  R         
Sbjct: 118 KKKVYIIDEVHMLSTGAFNALLKTLEEPPSHALFILATTDIQKVPATILSRCQ-RFDFKR 176

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
             ++D+   +++  ++  +++ D A   I+ ++ G  R A  +L R  + ++  
Sbjct: 177 ISVKDIYERLKKIVQMENISIDDNALYLISQKAEGALRDALTILERCMNTSDEH 230


>gi|302874447|ref|YP_003843080.1| Sigma 54 interacting domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|307690946|ref|ZP_07633392.1| Sigma 54 interacting domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|302577304|gb|ADL51316.1| Sigma 54 interacting domain protein [Clostridium cellulovorans
           743B]
          Length = 567

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 56/275 (20%), Positives = 94/275 (34%), Gaps = 56/275 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  EE  GQ E    LK     A        HV+  GPPG+GKT  A++V        
Sbjct: 66  RPKNFEEIIGQEEGIKALK-----AALCGGNPQHVIIYGPPGIGKTAAARLVLEYAKTKD 120

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDV---------------------------------- 108
           +S      +   ++ A     ++R +                                  
Sbjct: 121 KSPFNKESS-FIEIDATTLRFDERGIADPLIGSVHDPIYQGAGAYGMAGIPQPKPGAVSK 179

Query: 109 -----LFIDEIHRLSIIVEEILYPAMEDFQL----DLMVGEGPSARSVKINL------SR 153
                LFIDEI  +  I    L   +ED ++         E P+  +    +      + 
Sbjct: 180 AHGGMLFIDEIGEMHPIEMNKLLKVLEDRRVFFDSSYYNSEDPNIPTYIKEVFDKGFPAD 239

Query: 154 FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAM 213
           F LI ATTR      P      + +       E+++ + +  A   G+ ++ EA   +  
Sbjct: 240 FRLIGATTRSPEEITPALRSRCVEVFFRALTREEIERVSENAAYKIGVVLSPEAKAYVGK 299

Query: 214 RSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
            S    R A  +++     A+ +    IT+E  + 
Sbjct: 300 YSTN-GREALNIIQLCAGIADDSERNIITKEDVEW 333


>gi|261417516|ref|YP_003251198.1| DNA polymerase III subunits gamma/tau [Geobacillus sp. Y412MC61]
 gi|297528392|ref|YP_003669667.1| DNA polymerase III subunits gamma/tau [Geobacillus sp. C56-T3]
 gi|319765174|ref|YP_004130675.1| DNA polymerase III subunits gamma and tau [Geobacillus sp.
           Y412MC52]
 gi|261373973|gb|ACX76716.1| DNA polymerase III, subunits gamma and tau [Geobacillus sp.
           Y412MC61]
 gi|297251644|gb|ADI25090.1| DNA polymerase III, subunits gamma and tau [Geobacillus sp. C56-T3]
 gi|317110040|gb|ADU92532.1| DNA polymerase III, subunits gamma and tau [Geobacillus sp.
           Y412MC52]
          Length = 559

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 61/313 (19%), Positives = 110/313 (35%), Gaps = 36/313 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RP+   +  GQ      L    ++A  + +     LF GP G GKT+ A++ A+
Sbjct: 5   ALYRVFRPQRFADMVGQEHVTKTL----QSALLQHKISHAYLFSGPRGTGKTSAAKIFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHR-----LSIIVEEILYPAM 129
            +         P      +  A L  TN    DVL ID         +  I E++ +   
Sbjct: 61  AVNCE----QAPAAEPCNECPACLGITNGTVPDVLEIDAASNNRVDEIRDIREKVKFAPT 116

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                  ++ E             ++++        I ATT    +   +  R       
Sbjct: 117 SARYKVYIIDEVHMLSIGAFNALLKTLEEPPKHVIFILATTEPHKIPATIISRCQ-RFDF 175

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
               +  + + ++  A   G+  +DEA   IA  + G  R A  LL +   F++      
Sbjct: 176 RRIPLPAIVSRLKYVASAQGVEASDEALSAIARAADGGMRDALSLLDQAISFSDGKLRLD 235

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
               +  AA    A      + +  +    + +        +ET+ A   +P   +EDLI
Sbjct: 236 DVLAMTGAA--SFAALSSFIEAIHRKDTAAVLQQ-------LETMMAQGKDPHRLVEDLI 286

Query: 301 EPYMIQQGFIQRT 313
             Y  +   + +T
Sbjct: 287 LYY--RDLLLYKT 297


>gi|194432687|ref|ZP_03064972.1| DNA polymerase III, tau subunit [Shigella dysenteriae 1012]
 gi|194418949|gb|EDX35033.1| DNA polymerase III, tau subunit [Shigella dysenteriae 1012]
 gi|332097008|gb|EGJ01992.1| DNA polymerase III, subunits gamma and tau [Shigella dysenteriae
           155-74]
          Length = 643

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 53/306 (17%), Positives = 106/306 (34%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++        + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +A    A   +A  + G+ R A  L     D A  +    ++     A
Sbjct: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAIASGDGQVSTPAVSA 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L  D+       L  +  +    G   + +   +A      +A+   +   + +  
Sbjct: 240 MLGTLDDDQA------LSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIA 293

Query: 309 FIQRTP 314
            +Q +P
Sbjct: 294 MVQLSP 299


>gi|229582086|ref|YP_002840485.1| replication factor C small subunit [Sulfolobus islandicus
           Y.N.15.51]
 gi|228012802|gb|ACP48563.1| Replication factor C [Sulfolobus islandicus Y.N.15.51]
          Length = 330

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 52/279 (18%), Positives = 96/279 (34%), Gaps = 40/279 (14%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           +E       RPRTL++   Q E    LK F++      + + H+LF GP G GKTT A  
Sbjct: 6   EEILWAEKYRPRTLDDIVNQREIIDRLKKFVK-----EKNMPHLLFAGPSGTGKTTAALA 60

Query: 74  VAR------------ELGVNFRSTSGPVIAKAGDLAA-LLTNLEDRDVLFIDEIHRLSII 120
           +              EL  +       +  K  + A  ++ +     V+ +DE   ++  
Sbjct: 61  LVHDLYGDNYVEYFLELNASDERGIDVIRNKVKEFARTVIPSNVPFKVVLLDEADNMTAD 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            ++ L   ME      +  E                I A   +  +  P+Q R  +  R 
Sbjct: 121 AQQALRRTME------LYTENTRF------------ILACNYLSKIIEPIQSRTAL-FRF 161

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA-- 238
              + ED+   +   AK        +A   I   + G  R +  +L+    + +++    
Sbjct: 162 YPLKKEDVVNRLVYIAKNEKAEYDQKALETIYDITMGDMRKSINILQAASAYGKISVEAV 221

Query: 239 -KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFG 276
            K +           +++   G        L  +   +G
Sbjct: 222 FKVLGLAQPKEVREMISLALQGKFTQAREKLRTLLVTYG 260


>gi|189203731|ref|XP_001938201.1| replication factor C subunit 4 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187985300|gb|EDU50788.1| replication factor C subunit 4 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 417

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 52/236 (22%), Positives = 83/236 (35%), Gaps = 28/236 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+TL E T Q      L   ++++      L H+LF GPPG GKT+    +A+
Sbjct: 34  PWVEKYRPKTLSEVTAQDNTIQILSRTMQSS-----NLPHMLFYGPPGTGKTSTILALAK 88

Query: 77  -------------ELGVNFRSTSGPVIAKAGDLAA-LLTNLEDRDVLFIDEIH---RLSI 119
                        EL  +       V  K  D A   L+   + +++  D+     +   
Sbjct: 89  ELYGPELMKSRVLELNASDERGISIVRQKVKDFARQQLSVAPNYNIMVEDKSSGETKTVR 148

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSA----RSVKINLSRFTLIAA-TTRVGLLTNPLQDRF 174
             ++   P  +   LD        A    R      SR T        V  + +PL  R 
Sbjct: 149 YRDKYPCPPFKIIVLDEADSMTQDAQSALRRTMETYSRMTRFCLVCNYVTRIIDPLASRC 208

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
               R    +  +    V   AKL  +++ D  A E+   + G  R A   L+   
Sbjct: 209 S-KFRFKSLDQGNAIKRVSDIAKLENVSLEDGVAEELVRVADGDLRKAITFLQSAA 263


>gi|268569884|ref|XP_002648361.1| C. briggsae CBR-RFC-4.2 protein [Caenorhabditis briggsae]
 gi|268573696|ref|XP_002641825.1| C. briggsae CBR-RFC-4.1 protein [Caenorhabditis briggsae]
 gi|187040034|emb|CAP21143.1| CBR-RFC-4.2 protein [Caenorhabditis briggsae AF16]
          Length = 335

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 85/249 (34%), Gaps = 43/249 (17%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M +   + S    +        RP+TL++   Q E  + LK  ++      + L H+LF 
Sbjct: 1   MSEAREVDSSKKQKVLTWTEKYRPKTLDDIAHQEEVVTMLKGALQ-----GKDLPHLLFY 55

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAAL------LTNLEDRD------- 107
           GPPG GKT+ A    R+L  +       +   A D   +      +              
Sbjct: 56  GPPGTGKTSTALAFCRQLFPSSIFRDRVLDLNASDERGISVVRQKIQAFSKTTLGSSNKE 115

Query: 108 ------VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATT 161
                 ++ +DE+  ++   +  +   +EDF                   +RF LI    
Sbjct: 116 DVLRLKIIILDEVDAMTREAQAAMRRVIEDFSKT----------------TRFILIC--N 157

Query: 162 RVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRI 221
            V  L  P+  R     R      E     ++      G  ++++   ++   S G  R 
Sbjct: 158 YVSRLIPPVVSRCA-KFRFKSLPAEVQVQRLRTICDAEGTPMSEDELKQVMEYSEGDLRR 216

Query: 222 AGRLLRRVR 230
           A   L+ + 
Sbjct: 217 AVCTLQSLA 225


>gi|10178061|dbj|BAB11425.1| unnamed protein product [Arabidopsis thaliana]
          Length = 871

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 59/250 (23%), Positives = 93/250 (37%), Gaps = 23/250 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE-------ALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++F GQ      L+  +   K   E           VL  GPPG GKT LA+ +A E 
Sbjct: 314 TFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA 373

Query: 79  GVNFRSTSGP---------VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           G+ F + +G            ++  DL A   +     ++FIDEI  +            
Sbjct: 374 GLPFFAANGTDFVEMFVGVAASRVKDLFASSRSYAP-SIIFIDEIDAIGSKRGGPDIGGG 432

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
              +   ++         K+  S+  +I AT R+ +L   L    RF   IR+     + 
Sbjct: 433 GAEREQGLLQILTEMDGFKVTTSQVLVIGATNRLDILDPALLRKGRFDKIIRVGLPSKDG 492

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT----ITR 243
              I++  A+       DE    +   +  T    G  L+ V + A +  A+     I R
Sbjct: 493 RLAILKVHARNKFFRSEDEKEELLQEVAENTEDFTGAELQNVLNEAGILTARKDLDYIGR 552

Query: 244 EIADAALLRL 253
           E    AL R 
Sbjct: 553 EELLEALKRQ 562


>gi|85703838|ref|ZP_01034941.1| DNA polymerase III subunits gamma and tau [Roseovarius sp. 217]
 gi|85671158|gb|EAQ26016.1| DNA polymerase III subunits gamma and tau [Roseovarius sp. 217]
          Length = 587

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 62/300 (20%), Positives = 106/300 (35%), Gaps = 31/300 (10%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T  +  GQ      LK   +A +         +  G  G GKTT A+++A+ +
Sbjct: 13  ARKYRPETFADLVGQDAMVRTLKNAFQADRIAQA----FIMTGIRGTGKTTTARIIAKGM 68

Query: 79  GVNFRSTSG-PVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSI-----IVEEILYPAME 130
                   G P     G        +E R  DV+ +D   R  +     I+E + Y A  
Sbjct: 69  NCIGPDGMGTPTTEPCGVCEHCRAIMEGRHVDVMEMDAASRTGVGDIREIIESVNYRAAS 128

Query: 131 DFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
                 ++ E             ++++   +    I ATT +  +   +  R      L 
Sbjct: 129 ARYKIYIIDEVHMLSVNAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLSRCQ-RFDLR 187

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
             E E +  +++R A      ++D+A   I   + G+ R A  LL    D A    A   
Sbjct: 188 RIEPEVMIALLRRIADKESAQISDDALALITRAAEGSARDATSLL----DQAISHGAGET 243

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T +   A L      ++  D  D     ++  +  G    +    A  ++P   + DL E
Sbjct: 244 TADQVRAMLGLADRGRV-LDLFD----MILRGDAAGALSELSAQYAEGADPLAVLRDLAE 298


>gi|30698050|ref|NP_201263.2| AAA-type ATPase family protein [Arabidopsis thaliana]
 gi|332010540|gb|AED97923.1| AAA-type ATPase family protein [Arabidopsis thaliana]
          Length = 855

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 59/250 (23%), Positives = 93/250 (37%), Gaps = 23/250 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE-------ALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++F GQ      L+  +   K   E           VL  GPPG GKT LA+ +A E 
Sbjct: 314 TFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA 373

Query: 79  GVNFRSTSGP---------VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           G+ F + +G            ++  DL A   +     ++FIDEI  +            
Sbjct: 374 GLPFFAANGTDFVEMFVGVAASRVKDLFASSRSYAP-SIIFIDEIDAIGSKRGGPDIGGG 432

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
              +   ++         K+  S+  +I AT R+ +L   L    RF   IR+     + 
Sbjct: 433 GAEREQGLLQILTEMDGFKVTTSQVLVIGATNRLDILDPALLRKGRFDKIIRVGLPSKDG 492

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT----ITR 243
              I++  A+       DE    +   +  T    G  L+ V + A +  A+     I R
Sbjct: 493 RLAILKVHARNKFFRSEDEKEELLQEVAENTEDFTGAELQNVLNEAGILTARKDLDYIGR 552

Query: 244 EIADAALLRL 253
           E    AL R 
Sbjct: 553 EELLEALKRQ 562


>gi|114647195|ref|XP_001156572.1| PREDICTED: replication factor C subunit 5 isoform 5 [Pan
           troglodytes]
          Length = 340

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 74/225 (32%), Gaps = 38/225 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA- 75
             +   RP+TL +     +  S ++ FI       + L H+L  GPPG GKT+     A 
Sbjct: 21  PWVEKYRPQTLNDLISHQDILSTIQKFI-----NEDRLPHLLLYGPPGTGKTSTILACAK 75

Query: 76  -----RELGVNFRSTSGPVIAKAGDLAA-LLTNLEDRDVL-------FIDEIHRLSIIVE 122
                +E G      +         +   +L+    R +         +DE   ++   +
Sbjct: 76  QLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQ 135

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             L   +E F       E      +   LS+                LQ R     R   
Sbjct: 136 NALRRVIEKF------TENTRFCLICNYLSKIIP------------ALQSRC-TRFRFGP 176

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
              E +   ++   +   + ++++    +   S G  R A  +L+
Sbjct: 177 LTPELMVPRLEHVVEEEKVGISEDGMKALVTLSSGDMRRALNILQ 221


>gi|224013894|ref|XP_002296611.1| replication factor C 37 KD subunit [Thalassiosira pseudonana
           CCMP1335]
 gi|220968963|gb|EED87307.1| replication factor C 37 KD subunit [Thalassiosira pseudonana
           CCMP1335]
          Length = 336

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 46/240 (19%), Positives = 80/240 (33%), Gaps = 39/240 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RPR L++  G  +    L+     A A    + +++  GPPG GKTT    +AR
Sbjct: 19  PWVEKYRPRNLDDVVGNEDTLVRLR-----AIAEDGNMPNLILCGPPGTGKTTSVHALAR 73

Query: 77  ------------ELGVNFRSTSGPVIAKAGDLA--ALLTNLEDRDVLFIDEIHRLSIIVE 122
                       EL  +       V  K    A   +   +    ++ +DE   ++   +
Sbjct: 74  QLLGSAYSNGVLELNASDSRGIDVVRNKIKGFAMNKVNLPVGRHKIIILDEADSMTSAAQ 133

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           + L   ME +                 N +RF    A      +  P+Q R  I +R + 
Sbjct: 134 QALRRTMEIYS----------------NTTRF--ALACNVSTKIIEPIQSRAAI-LRYSR 174

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA-GRLLRRVRDFAEVAHAKTI 241
              E +   ++       ++  D     I   + G  R A   +   V  F  V+     
Sbjct: 175 LTDEQILNRLKFVCGEEEVSYDDGGLEAIIFTAEGDMRNALNNIQATVSGFEHVSQTNVF 234


>gi|99080007|ref|YP_612161.1| DNA polymerase III subunits gamma and tau [Ruegeria sp. TM1040]
 gi|99036287|gb|ABF62899.1| DNA polymerase III subunits gamma and tau [Ruegeria sp. TM1040]
          Length = 608

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 64/320 (20%), Positives = 110/320 (34%), Gaps = 33/320 (10%)

Query: 1   MMDREGLLSRNVS--QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M +    +S  V   Q        RP T  +  GQ      LK    A +         +
Sbjct: 1   MSEHSPEISDAVQSGQYQVLARKYRPETFADLVGQDAMVRTLKNAFAADRIAQA----FI 56

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTS-GPVIAKAGDLAALLTNLEDR--DVLFIDEIH 115
             G  G GKTT A+++A+ +         GP     G        +E R  DV+ +D   
Sbjct: 57  MTGIRGTGKTTTARIIAKGMNCIGEDGQGGPTTEPCGKCEHCTAIMEGRHVDVMEMDAAS 116

Query: 116 RLSI-----IVEEILYPAMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATT 161
           R  +     I++ + Y A        ++ E             ++++   +    I ATT
Sbjct: 117 RTGVGDIREIIDSVAYRAASARYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATT 176

Query: 162 RVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRI 221
            +  +   +  R      L   E E +  +++R A      + D+A   I   + G+ R 
Sbjct: 177 EIRKVPVTVLSRCQ-RFDLRRIEPEVMIDLLRRIATSEQAEIADDALALITRAAEGSARD 235

Query: 222 AGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVG 281
           A  LL    D A    A   T +   A L      ++  D +D     ++  +       
Sbjct: 236 ATSLL----DQAISHGAGETTADQVRAMLGLADRGRV-LDLMD----MILRGDAAAALTE 286

Query: 282 IETISAGLSEPRDAIEDLIE 301
           +    A  ++P   + DL E
Sbjct: 287 LSAQYAEGADPMAVLRDLAE 306


>gi|218848112|ref|YP_002454681.1| DNA polymerase III subunit gamma/tau [Bacillus cereus G9842]
 gi|218546243|gb|ACK98636.1| DNA polymerase III subunit gamma/tau [Bacillus cereus G9842]
          Length = 548

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 85/232 (36%), Gaps = 22/232 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     RP    E  GQ      ++  ++ AK       H  +F GP G GKTT+A+++A
Sbjct: 4   ALYRKYRPTNFSELIGQNHIKQTIQNALKLAK-----FSHAYMFTGPRGTGKTTIAKLIA 58

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAME 130
             L     +  G    +     A+  N    DVL ID      + ++  I E++ Y    
Sbjct: 59  TSLNCESLNNEGEPCNECSQCKAIRGNSHA-DVLEIDAASNNGVEQIREIREQVAYAPGT 117

Query: 131 DFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
                 ++ E             ++++        I ATT V  +   +  R        
Sbjct: 118 GKYKVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTDVHKIPATIISRCQ-RFDFR 176

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                D+   ++  A    + + ++A   + M ++G  R A  L+ +   FA
Sbjct: 177 RIGPRDIIERLRHVAIKEEVKIEEDALQLLGMLAQGGMRDALSLMDQTIAFA 228


>gi|71654128|ref|XP_815689.1| replication factor C, subunit 2 [Trypanosoma cruzi strain CL
           Brener]
 gi|70880763|gb|EAN93838.1| replication factor C, subunit 2, putative [Trypanosoma cruzi]
          Length = 347

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 64/272 (23%), Positives = 100/272 (36%), Gaps = 27/272 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP TL E   Q EA   L+    A+   + ++ H LF GPPG GKTT    VAR
Sbjct: 20  PWVEKYRPMTLSEVKSQEEAVCALR----ASLQSSASMPHFLFHGPPGTGKTTAILAVAR 75

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE--ILYPAMEDFQL 134
           EL       S      A D   +    E   V     +  +   V+    +YP +  F+L
Sbjct: 76  ELFGPDYVHSRVREMNASDDRGIQVIREKVKVFAQTAVGNVGHKVQSDGQVYP-VPQFKL 134

Query: 135 DLMVGEGPSARSVKINLSRF--------TLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++          +  L R                 V  + +P+  R     R      E
Sbjct: 135 IILDEADALLPDAQAALRRMMEDFSDVTRFCILCNYVSRIIDPIASRCA-KYRFKPLVRE 193

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
            L   ++  AK+  + V+D +   +   S G  R A   L+    +A+ AH   +T+E  
Sbjct: 194 TLYDRIREIAKMEEITVSDASLEALDRVSGGDLRSAIMYLQ----YAQKAHGSDLTKENF 249

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIA-RNFGG 277
              L       M   +   +YL  +  ++F G
Sbjct: 250 ---LEVSGSVPMELLE---KYLKALVTKDFDG 275


>gi|238911386|ref|ZP_04655223.1| DNA polymerase III subunits gamma and tau [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
          Length = 642

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 52/306 (16%), Positives = 108/306 (35%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++   +    + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +A    A   ++  + G+ R A  L     D A  +    ++ +   A
Sbjct: 184 RHQLEHILNEEHIAHEPRALQLLSRAADGSLRDALSL----TDQAIASGDGQVSTQAVSA 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L  D+       L  +  +    G   + +   +A      +A+   +   + +  
Sbjct: 240 MLGTLDDDQA------LSLVEAVVDANGERVMLLINEAAARGIEWEALLVEMLSLLHRIA 293

Query: 309 FIQRTP 314
            +Q +P
Sbjct: 294 MVQLSP 299


>gi|194306567|ref|NP_853556.2| replication factor C subunit 5 isoform 2 [Homo sapiens]
 gi|193787684|dbj|BAG52890.1| unnamed protein product [Homo sapiens]
          Length = 319

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 74/223 (33%), Gaps = 38/223 (17%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75
           +   RP+TL +     +  S ++ FI       + L H+L  GPPG GKT+     A   
Sbjct: 2   VEKYRPQTLNDLISHQDILSTIQKFI-----NEDRLPHLLLYGPPGTGKTSTILACAKQL 56

Query: 76  ---RELGVNFRSTSGPVIAKAGDLAA-LLTNLEDRDVL-------FIDEIHRLSIIVEEI 124
              +E G      +         +   +L+    R +         +DE   ++   +  
Sbjct: 57  YKDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNA 116

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           L   +E F       E      +   LS+                LQ R     R     
Sbjct: 117 LRRVIEKF------TENTRFCLICNYLSKIIP------------ALQSRC-TRFRFGPLT 157

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
            E +   ++   +   + ++++    +   S G  R A  +L+
Sbjct: 158 PELMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNILQ 200


>gi|56414361|ref|YP_151436.1| DNA polymerase III subunits gamma and tau [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197363281|ref|YP_002142918.1| DNA polymerase III subunits gamma and tau [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|56128618|gb|AAV78124.1| DNA polymerase III subunits gamma and tau [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197094758|emb|CAR60291.1| DNA polymerase III subunits gamma and tau [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
          Length = 642

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 51/306 (16%), Positives = 107/306 (34%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++   +    + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +A    A   ++  + G+ R A  L     D A  +    ++ +   A
Sbjct: 184 RHQLEHILNEEHIAHEPRALQLLSRAADGSLRDALSL----TDQAIASGDGQVSTQAVSA 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L  D+       L  +  +    G   + +   +A      + +   +   + +  
Sbjct: 240 MLGTLDDDQA------LSLVEAVVDANGERVMSLINEAAARGIEWEGLLVEMLSLLHRIA 293

Query: 309 FIQRTP 314
            +Q +P
Sbjct: 294 MVQLSP 299


>gi|45187984|ref|NP_984207.1| ADR111Wp [Ashbya gossypii ATCC 10895]
 gi|44982768|gb|AAS52031.1| ADR111Wp [Ashbya gossypii ATCC 10895]
          Length = 321

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 45/250 (18%), Positives = 80/250 (32%), Gaps = 39/250 (15%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           + S     E   +   RP+ L++  G  E    L+       AR   + H++  G PG+G
Sbjct: 1   MTSLATKLELPWVEKYRPKLLKDVVGNDETVERLQQI-----ARDGNMPHMIISGLPGIG 55

Query: 67  KTTLAQVVARE-----LGVNFRSTSGPVIAKAGDLAALLTNLEDR---------DVLFID 112
           KTT    +A E             +         +   +     +          ++ +D
Sbjct: 56  KTTSIHCLAHELLGDAYSQAVLELNASDDRGIDVVRNQIKQFAQKKCTLPPGKHKIIILD 115

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E   ++   ++ L   ME +                 N +RF    A  +   +  PLQ 
Sbjct: 116 EADSMTSGAQQALRRTMELYS----------------NTTRFAF--ACNQSNKIIEPLQS 157

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA-GRLLRRVRD 231
           R  I       + + LK + +   K   +  T++    +   + G  R A   L   V  
Sbjct: 158 RCAILRYSKLSDEQVLKRLFE-IIKAENVQYTNDGLEALIFTAEGDMRQAINNLQSTVAG 216

Query: 232 FAEVAHAKTI 241
           F  V      
Sbjct: 217 FTLVNGDNVF 226


>gi|297612760|ref|NP_001066296.2| Os12g0176500 [Oryza sativa Japonica Group]
 gi|10798806|dbj|BAB16441.1| replication factor C 37 kDa subunit [Oryza sativa Japonica Group]
 gi|77553810|gb|ABA96606.1| Activator 1 37 kDa subunit, putative, expressed [Oryza sativa
           Japonica Group]
 gi|125535960|gb|EAY82448.1| hypothetical protein OsI_37665 [Oryza sativa Indica Group]
 gi|125578677|gb|EAZ19823.1| hypothetical protein OsJ_35406 [Oryza sativa Japonica Group]
 gi|215737297|dbj|BAG96226.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255670097|dbj|BAF29315.2| Os12g0176500 [Oryza sativa Japonica Group]
          Length = 339

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 82/244 (33%), Gaps = 45/244 (18%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           ++  V      +   RPR +++   Q E    L   ++ A      L H+LF GPPG GK
Sbjct: 1   MAPLVPSSQPWVEKYRPRQVKDVAHQEEVVRVLTTTLQTAD-----LPHMLFYGPPGTGK 55

Query: 68  TTLAQVVAR-------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------- 106
           TT A  +A              EL  +       V  K  D AA+      +        
Sbjct: 56  TTTALAIAYQLYGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSARKGGYPCPPY 115

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
            ++ +DE   ++   +  L   ME +                  ++RF  I     +  +
Sbjct: 116 KIIILDEADSMTEDAQNALRRTMETYS----------------KVTRFFFIC--NYISRI 157

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
             PL  R     R      E +   +       GL++  +A   ++  S G  R A   L
Sbjct: 158 IEPLASRCA-KFRFKPLSEEVMSNRILHICNEEGLSLDAQALATLSTISNGDLRRAITYL 216

Query: 227 RRVR 230
           +   
Sbjct: 217 QSAA 220


>gi|467409|dbj|BAA05255.1| DNA polymerase III subunit [Bacillus subtilis]
 gi|580914|emb|CAA34877.1| dnaZX [Bacillus subtilis]
          Length = 563

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 58/316 (18%), Positives = 108/316 (34%), Gaps = 36/316 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RP+  E+  GQ      L    + A  + +     LF GP G GKT+ A++ A+
Sbjct: 5   ALYRVFRPQRFEDVVGQEHITKTL----QNALLQKKFSHAYLFSGPRGTGKTSAAKIFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAAL--LTNLEDRDVLFID-----EIHRLSIIVEEILYPAM 129
            +         PV     + AA   +TN    DV+ ID      +  +  I +++ +   
Sbjct: 61  AVNCEH----APVDEPCNECAACKGITNGSISDVIEIDAASNNGVDEIRDIRDKVKFAPS 116

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                  ++ E             ++++        I ATT    +   +  R       
Sbjct: 117 AVTYKVYIIDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLTIISRCQ-RFDF 175

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
                + +   + +      L V + +   IA  + G  R A  LL +   F+     K 
Sbjct: 176 KRITSQAIVGRMNKIVDAEQLQVEEGSLEIIASAADGGMRDALSLLDQAISFSGDI-LKV 234

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
               +   A+ +L I K+     D      +          +  +     +P   IED+I
Sbjct: 235 EDALLITGAVSQLYIGKLAKSLHDKNVSDALET--------LNELLQQGKDPAKLIEDMI 286

Query: 301 EPYMIQQGFIQRTPRG 316
             +  +   + +T  G
Sbjct: 287 FYF--RDMLLYKTAPG 300


>gi|303388295|ref|XP_003072382.1| DNA replication factor C small subunit [Encephalitozoon
           intestinalis ATCC 50506]
 gi|303301522|gb|ADM11022.1| DNA replication factor C small subunit [Encephalitozoon
           intestinalis ATCC 50506]
          Length = 305

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 49/214 (22%), Positives = 82/214 (38%), Gaps = 36/214 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                 RP +L++  G  E  + LK     + +    + ++LF GPPG GKTT  + +A 
Sbjct: 4   PWTEKYRPESLQQVVGNREIVAALK-----SISSTNKIPNMLFYGPPGTGKTTSIRAIAN 58

Query: 77  --------ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
                   EL  +       V     + A+  +      +  +DE   +S   +  L   
Sbjct: 59  NLPRSCVLELNASDERGIATVRETIKEFASTYSKTTKLVI--LDEADMMSRDAQNALRRI 116

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +EDF  +                +RF LIA  +R   +  P+  R     +  F  IED 
Sbjct: 117 IEDFSAN----------------ARFCLIANHSR--KIIPPILSRC---TKFRFGPIEDT 155

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
           ++ ++   K   +  ++E    IA  S G  R A
Sbjct: 156 ESRIKEICKKENIKYSEEGIKGIAEISEGDMRKA 189


>gi|330921788|ref|XP_003299563.1| hypothetical protein PTT_10587 [Pyrenophora teres f. teres 0-1]
 gi|311326698|gb|EFQ92339.1| hypothetical protein PTT_10587 [Pyrenophora teres f. teres 0-1]
          Length = 418

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 52/236 (22%), Positives = 84/236 (35%), Gaps = 28/236 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+TL E T Q      L   ++++      L H+LF GPPG GKT+    +A+
Sbjct: 34  PWVEKYRPKTLSEVTAQDNTIQILSRTMQSS-----NLPHMLFYGPPGTGKTSTILALAK 88

Query: 77  -------------ELGVNFRSTSGPVIAKAGDLAA-LLTNLEDRDVLFIDEIH---RLSI 119
                        EL  +       V  K  D A   L+   + +++  D+     +   
Sbjct: 89  ELYGPELMKSRVLELNASDERGISIVRQKVKDFARQQLSVAPNYNIMVEDKSSGEAKTVR 148

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSA----RSVKINLSRFTLIAA-TTRVGLLTNPLQDRF 174
             ++   P  +   LD        A    R      SR T        V  + +PL  R 
Sbjct: 149 YRDKYPCPPFKIIVLDEADSMTQDAQSALRRTMETYSRMTRFCLVCNYVTRIIDPLASRC 208

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
               R    +  +    V   AKL  +++ D+ A E+   + G  R A   L+   
Sbjct: 209 S-KFRFKSLDQGNAVKRVSDIAKLENVSLEDDVAEELVRVADGDLRKAITFLQSAA 263


>gi|238922752|ref|YP_002936265.1| DNA polymerase III, subunits gamma and tau [Eubacterium rectale
           ATCC 33656]
 gi|238874424|gb|ACR74131.1| DNA polymerase III, subunits gamma and tau [Eubacterium rectale
           ATCC 33656]
          Length = 523

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 56/267 (20%), Positives = 95/267 (35%), Gaps = 26/267 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP+  E+  GQ    + LK  I+A +         LF G  G GKTT+A++ A+
Sbjct: 5   ALYRKFRPQEFEDVKGQEHIVTTLKNQIKADRIGHAY----LFCGTRGTGKTTVAKIFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +         P   +     A+        V+ ID      +  +  I EE+ Y   E 
Sbjct: 61  AVNCEHPVDGSP-CGECPSCRAITEGSSMN-VIEIDAASNNGVDNIRQIREEVTYRPTEG 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++   S    I ATT    +   +  R       + 
Sbjct: 119 RYKVYIIDEVHMLSAGAFNALLKTLEEPPSYVIFILATTEAHKIPITILSRCQ-RYDFHR 177

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
             I+ + + +    +   + V + A   +A    G+ R A  LL +   F      + +T
Sbjct: 178 ISIDTIASRLSDLMEQEHVEVEERAIRYVAKAGDGSMRDALSLLDQCIAF---HLGEKLT 234

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLT 269
            E     L   A+D   F +L  R L 
Sbjct: 235 YENVLEVL--GAVDTEVFSRLLRRILD 259


>gi|302336481|ref|YP_003801688.1| DNA polymerase III, subunits gamma and tau [Olsenella uli DSM 7084]
 gi|301320321|gb|ADK68808.1| DNA polymerase III, subunits gamma and tau [Olsenella uli DSM 7084]
          Length = 732

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 84/232 (36%), Gaps = 22/232 (9%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           ++  +  RP+T  +  GQ    S L    E A          LF GP G GKTT+A+++A
Sbjct: 2   ESLYTKYRPQTFADVVGQQHVVSTL----EHAVLEGRTSHAYLFCGPRGTGKTTMARLLA 57

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL--SIIVEEIL----YPAM 129
           + L     +   P    + +   L+ + +  DV  +D   R     + EEI+    Y  +
Sbjct: 58  KALMCERGAGHLP--DGSCEQCRLIASGDHPDVYELDAASRTGVDNVREEIISRVSYAPV 115

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                  ++ E             ++++        +  TT    +   +  R       
Sbjct: 116 RGGYKVYIIDEVHMLTTAAFNALLKTLEEPPEHTLFVLCTTDPQKIPETILSRVQ-RFDF 174

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           +    +D+K  + R     G +    A   +   +RG  R A   L ++  F
Sbjct: 175 HAIGNDDIKAHLTRVCDEEGFSYDVAAIELVVRHARGGMRDALSTLEQLSVF 226


>gi|240146665|ref|ZP_04745266.1| DNA polymerase III, gamma and tau subunit [Roseburia intestinalis
           L1-82]
 gi|257201209|gb|EEU99493.1| DNA polymerase III, gamma and tau subunit [Roseburia intestinalis
           L1-82]
          Length = 526

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 50/232 (21%), Positives = 81/232 (34%), Gaps = 25/232 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP+  E+  GQ    + LK  I+A +         LF G  G GKTT+A++ A+
Sbjct: 5   ALYRKFRPQEFEDVKGQEHIVTTLKNQIKADRIGHAY----LFCGTRGTGKTTIAKIFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD--VLFID-----EIHRLSIIVEEILYPAM 129
            +         P     G+  A           V+ ID      +  +  I EE+ Y   
Sbjct: 61  AVNCEHPVDGSP----CGECPACRAIAAGNSMNVIEIDAASNNGVDNIRQIREEVEYRPT 116

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           E      ++ E             ++++   S    I ATT    +   +  R       
Sbjct: 117 EGKYKVYIIDEVHMLSIGAFNALLKTLEEPPSYVIFILATTEAHKIPITILSRCQ-RYDF 175

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
               IE +   +    +   + V + A   IA  + G+ R A  LL +   F
Sbjct: 176 RRISIETISARLMELMEKEQVTVEERAIRYIAKAADGSMRDALSLLDQCIAF 227


>gi|221307828|ref|ZP_03589675.1| DNA polymerase III subunits gamma and tau [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221312150|ref|ZP_03593955.1| DNA polymerase III subunits gamma and tau [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221317083|ref|ZP_03598377.1| DNA polymerase III subunits gamma and tau [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221321346|ref|ZP_03602640.1| DNA polymerase III subunits gamma and tau [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|255767015|ref|NP_387900.2| DNA polymerase III subunits gamma and tau [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|239938906|sp|P09122|DPO3X_BACSU RecName: Full=DNA polymerase III subunit gamma/tau
 gi|225184642|emb|CAB11795.2| DNA polymerase III (gamma and tau subunits) [Bacillus subtilis
           subsp. subtilis str. 168]
          Length = 563

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 58/316 (18%), Positives = 108/316 (34%), Gaps = 36/316 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RP+  E+  GQ      L    + A  + +     LF GP G GKT+ A++ A+
Sbjct: 5   ALYRVFRPQRFEDVVGQEHITKTL----QNALLQKKFSHAYLFSGPRGTGKTSAAKIFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAAL--LTNLEDRDVLFID-----EIHRLSIIVEEILYPAM 129
            +         PV     + AA   +TN    DV+ ID      +  +  I +++ +   
Sbjct: 61  AVNCEH----APVDEPCNECAACKGITNGSISDVIEIDAASNNGVDEIRDIRDKVKFAPS 116

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                  ++ E             ++++        I ATT    +   +  R       
Sbjct: 117 AVTYKVYIIDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLTIISRCQ-RFDF 175

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
                + +   + +      L V + +   IA  + G  R A  LL +   F+     K 
Sbjct: 176 KRITSQAIVGRMNKIVDAEQLQVEEGSLEIIASAADGGMRDALSLLDQAISFSGDI-LKV 234

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
               +   A+ +L I K+     D      +          +  +     +P   IED+I
Sbjct: 235 EDALLITGAVSQLYIGKLAKSLHDKNVSDALET--------LNELLQQGKDPAKLIEDMI 286

Query: 301 EPYMIQQGFIQRTPRG 316
             +  +   + +T  G
Sbjct: 287 FYF--RDMLLYKTAPG 300


>gi|90020982|ref|YP_526809.1| DNA polymerase III subunits gamma and tau [Saccharophagus degradans
           2-40]
 gi|89950582|gb|ABD80597.1| DNA polymerase III, gamma subunit / DNA polymerase III, tau subunit
           [Saccharophagus degradans 2-40]
          Length = 690

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 80/227 (35%), Gaps = 27/227 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPRT  E  GQ      L+  I A       L H  LF G  G+GKT++A+++A+ L   
Sbjct: 11  RPRTFREMIGQEHV---LRALINA--LDHGRLHHAYLFTGTRGVGKTSIARILAKCLNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYP-----AMEDFQL 134
              +S P     G+ +A +   E R  D++ +D   R  +     L              
Sbjct: 66  TGVSSEP----CGECSACVEISEGRFVDLIEVDAASRTKVEDTRELLDNVQYAPTRGRYK 121

Query: 135 DLMVGEGPS--ARSVKINLS-------RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             ++ E       S    L            + ATT    L   +  R  +   L     
Sbjct: 122 IYLIDEVHMLSNHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC-LQFNLKNMSP 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           E +   +    +   +   + A  ++A  + G+ R A  L  +   F
Sbjct: 181 ERIVGHLSHILEKEVIPFEESALWQLARSADGSMRDALSLTDQSISF 227


>gi|217966691|ref|YP_002352197.1| DNA polymerase III, subunits gamma and tau [Dictyoglomus turgidum
           DSM 6724]
 gi|217335790|gb|ACK41583.1| DNA polymerase III, subunits gamma and tau [Dictyoglomus turgidum
           DSM 6724]
          Length = 518

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 90/228 (39%), Gaps = 25/228 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T EE  GQ        + ++ +   A      LF GP G GKTT+A+++A+ L    
Sbjct: 10  RPQTFEEVVGQEHIV----ITLQNSLKYAHIGHAYLFAGPRGTGKTTVARILAKALNC-- 63

Query: 83  RSTSGPVIAKAGDLAALLTNLEDR--DVLFID-----EIHRLSIIVEEILYPAMEDFQLD 135
               GP         + +   E R  DV+ ID      I  +  I E+     + D    
Sbjct: 64  --AKGPTPTPCLKCESCVEIAEGRSIDVIEIDAASNRGIDEIRDIREKARLLPVRDRYKV 121

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             + ++        I ATT    +   +  R            +
Sbjct: 122 YIIDEVHMLTNEAFNALLKILEEPPEHVIFIMATTEPQKVPLTILSRCQ-RFDFRRLTRD 180

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
           ++   + + A+  G  +++ A   IA++S+G+ R A  LL ++  +++
Sbjct: 181 EIIKQLAKIAESEGAKISEGALRLIAIQSQGSMRDAISLLEQLLVYSD 228


>gi|310643603|ref|YP_003948361.1| ATP-dependent protease la-like protein [Paenibacillus polymyxa SC2]
 gi|309248553|gb|ADO58120.1| ATP-dependent protease La-like protein [Paenibacillus polymyxa SC2]
          Length = 634

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 57/266 (21%), Positives = 89/266 (33%), Gaps = 56/266 (21%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                 RP TL++  GQ +    LK  + +A  +     HV+  GPPG+GKT  A+VV  
Sbjct: 117 PLAERTRPATLQDIVGQKDGLRALKAALCSANPQ-----HVIIYGPPGVGKTAAARVVLE 171

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDV---------------------------- 108
           E   N  S      AK  ++ A     ++R +                            
Sbjct: 172 EAKKNQSSPFKG-DAKFTEIDATTARFDERGIADPLIGSVHDPIYQGAGAMGVAGIPQPK 230

Query: 109 -----------LFIDEIHRLSIIVEEILYPAMEDFQLDL----MVGEGPSARSVKINL-- 151
                      LFIDEI  L       L   +ED ++ L       E     +   ++  
Sbjct: 231 PGAVTKAHGGMLFIDEIGELHPTQMNKLLKVLEDRKVFLESAYYNSEDSHTPAYIHDIFQ 290

Query: 152 ----SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEA 207
               + F L+ ATTR      P      + I     + +++  I +      G     E 
Sbjct: 291 NGLPADFRLVGATTRSPHELPPAIRSRCMEIYFRALQPQEIARIAEDAVHKLGFGPCPE- 349

Query: 208 ACEIAMRSRGTPRIAGRLLRRVRDFA 233
           A E+  R     R A  +++     A
Sbjct: 350 AVEVVQRYATNGREAVNMIQLAAGLA 375


>gi|290968136|ref|ZP_06559681.1| DNA polymerase III, subunit gamma and tau [Megasphaera genomosp.
           type_1 str. 28L]
 gi|290781811|gb|EFD94394.1| DNA polymerase III, subunit gamma and tau [Megasphaera genomosp.
           type_1 str. 28L]
          Length = 565

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 52/272 (19%), Positives = 96/272 (35%), Gaps = 23/272 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T E+  GQ +    L+  I   K         LF GP G GKT+ A++ AR +    
Sbjct: 11  RPKTFEDVVGQRQITETLQKAIIMDKVAHAY----LFSGPRGTGKTSTAKIFARAVNCEQ 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHR-----LSIIVEEILYPAMEDFQLDLM 137
            +   P      ++   +   E  DV+ ID         +  + E + +   E  +   +
Sbjct: 67  GTKGHPCNTC--EICRHIMRGESLDVVEIDAASNRSIEDIRTLRETVKFMPAEGKKKIYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++   +    I ATT    +   +  R            +D+
Sbjct: 125 IDEVHMLTIEAFNALLKTLEEPPAHVIFILATTEPERIPITILSRCQ-RYEFRRLTSDDI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL-RRVRDFAEVAHAKTITREIAD 247
              +   A    L++  +AA  +A+++ G  R A  +L + V   A V  A T+   +  
Sbjct: 184 AARLLYVAAQEHLSLAADAARVLAVKAEGGMRDALSMLDQCVGTGATVLDADTVRNILGL 243

Query: 248 AALLRLAIDKMGFDQLD-LRYLTMIARNFGGG 278
             +  +          D    +  I      G
Sbjct: 244 IGMEWVFSFCRVLMDNDGREIIRKIDEIIHLG 275


>gi|206901396|ref|YP_002251788.1| DNA polymerase III subunit gamma/tau [Dictyoglomus thermophilum
           H-6-12]
 gi|206740499|gb|ACI19557.1| DNA polymerase III subunit gamma/tau [Dictyoglomus thermophilum
           H-6-12]
          Length = 521

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 89/228 (39%), Gaps = 25/228 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T EE  GQ        + ++ +          LF GP G GKTT+A+++A+ L    
Sbjct: 10  RPQTFEEVVGQEHIV----ITLQNSLRYNHIGHAYLFAGPRGTGKTTIARILAKALNC-- 63

Query: 83  RSTSGPVIAKAGDLAALLTNLEDR--DVLFID-----EIHRLSIIVEEILYPAMEDFQLD 135
               GP         + +   E R  DV+ ID      I  +  I E+     + D    
Sbjct: 64  --VQGPTPTPCLKCESCVEIAEGRSIDVIEIDAASNRGIDEIRDIREKARLLPVRDRYKV 121

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             + ++        I ATT    +   +  R            +
Sbjct: 122 YIIDEVHMLTNEAFNALLKILEEPPEHVVFIMATTEPQKVPLTILSRCQ-RFDFRRLTRD 180

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
           ++   + + A+  G  +++ A   IA++S+G+ R A  LL ++  +++
Sbjct: 181 EVIKQLAKIAEKEGAKISEGALRLIAIQSQGSMRDAISLLEQLLVYSD 228


>gi|331666829|ref|ZP_08367703.1| DNA polymerase III, subunit gamma and tau [Escherichia coli TA271]
 gi|331066053|gb|EGI37937.1| DNA polymerase III, subunit gamma and tau [Escherichia coli TA271]
          Length = 483

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 53/306 (17%), Positives = 107/306 (34%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++        + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +A    A   +A  + G+ R A  L     D A  +    ++ +   A
Sbjct: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAIASGDGQVSTQAVSA 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L  D+       L  +  +    G   + +   +A      +A+   +   + +  
Sbjct: 240 MLGTLDDDQA------LSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIA 293

Query: 309 FIQRTP 314
            +Q +P
Sbjct: 294 MVQLSP 299


>gi|156083805|ref|XP_001609386.1| replication factor C subunit 4 [Babesia bovis T2Bo]
 gi|154796637|gb|EDO05818.1| replication factor C subunit 4 [Babesia bovis]
          Length = 306

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 78/230 (33%), Gaps = 38/230 (16%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
             D  I   RP  L++  G  E    L+V      AR   + ++L  GPPG GKTT    
Sbjct: 2   SNDIWIEKYRPGILKDVIGNPEVTRRLEVI-----AREGNMPNLLLCGPPGTGKTTSILC 56

Query: 74  VARELGVNFRST-----SGPVIAKAGDLAALLTNLEDR---------DVLFIDEIHRLSI 119
           +A E+  N         +         +   + N   +          ++ +DE+  ++ 
Sbjct: 57  LAHEMLGNHFKNAVLELNASDDRGVDVVRGAIKNFAKKSVVLPPNKHKIIILDEVDSMTE 116

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
             ++ L   ME +                   +RF    A  +   +  P+Q R  +   
Sbjct: 117 AAQQALRRIMEIYSKT----------------TRF--ALACNQSTKIIEPIQSRCAVIRY 158

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
               +   L  ++    K   +  T++    +   + G  R A   L+ V
Sbjct: 159 EPLQDEMILTRLIH-ICKEENVQYTNDGMEALLFTANGDMRRAVNNLQNV 207


>gi|268608024|ref|ZP_06141754.1| DNA polymerase III subunits gamma and tau [Ruminococcus
           flavefaciens FD-1]
          Length = 539

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 55/306 (17%), Positives = 102/306 (33%), Gaps = 32/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP T ++   Q +    LK  I + K         LF G  G GKTT A+++A+ +    
Sbjct: 10  RPMTFDDVISQQQTTDTLKNQIMSGKTAHAY----LFTGSRGTGKTTCARILAKAVNCRN 65

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P +    D+     +    D++ ID      +  +  + +  +Y          +
Sbjct: 66  MKDGNPCLEC--DICRDADSGALTDIVEIDAASNNGVDNIRDLRDAAVYTPDRGQYKIYI 123

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             + ++        I ATT +  +   +  R          + ED+
Sbjct: 124 IDEVHMLSAGAFNALLKIMEEPPPYVKFILATTEIHKVPATILSRCQ-RFDFRRIKPEDI 182

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              ++  A+   L +TD  A  IA  + G  R A  LL R          + I  ++  A
Sbjct: 183 AARLKYIAEQEELTLTDGGAAMIAKLADGGMRDAVSLLDRCS-----VGGEEIDEDVVSA 237

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
           A      D +         L  I        + I      +S+    + + +   +    
Sbjct: 238 AAGIAGRDYLF------GLLEAINTGDTAKALSITASLYDMSKDIGRLCEELISQLRNIM 291

Query: 309 FIQRTP 314
            I+ +P
Sbjct: 292 LIKVSP 297


>gi|154324182|ref|XP_001561405.1| hypothetical protein BC1G_00490 [Botryotinia fuckeliana B05.10]
 gi|150842719|gb|EDN17912.1| hypothetical protein BC1G_00490 [Botryotinia fuckeliana B05.10]
          Length = 344

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 55/267 (20%), Positives = 91/267 (34%), Gaps = 53/267 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+ L + T Q    + L+  ++++      L H+LF GPPG GKT+    +A+
Sbjct: 34  PWVEKYRPKGLGDVTAQDHTITVLQRTLQSS-----NLPHMLFYGPPGTGKTSTVLALAK 88

Query: 77  -------------ELGVNFRSTSGPVIAKAGDLAAL-LTNLE----------DRDVLFID 112
                        EL  +       V  K  D A + L+N               ++ +D
Sbjct: 89  ELYGPELMKSRVLELNASDERGISIVREKVKDFARMQLSNPSPAYRQKYPCPPYKIIILD 148

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA-TTRVGLLTNPLQ 171
           E   ++   +  L   ME +                   SR T        V  + +PL 
Sbjct: 149 EADSMTQDAQSALRRTMETY-------------------SRITRFCLICNYVTRIIDPLA 189

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R     R    +  +    V+  A   G+ + + A   +   S G  R A   L+    
Sbjct: 190 SRCS-KFRFKSLDKGNAVVRVREIADKEGVRLEEGAVEALIKCSEGDLRKAITYLQ---S 245

Query: 232 FAEVAHAKTITREIADAALLRLAIDKM 258
            A +  A +   E  D A      +KM
Sbjct: 246 AARLVGAVSQEGEERDNADKMDVDEKM 272


>gi|323507744|emb|CBQ67615.1| probable RFC2-DNA replication factor C, 41 KD subunit [Sporisorium
           reilianum]
          Length = 385

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 51/255 (20%), Positives = 87/255 (34%), Gaps = 47/255 (18%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           L++  +     +   RP+T+++   Q    + LK  +      +  L H+LF GPPG GK
Sbjct: 21  LAKEKAAMRPWVEKYRPKTIDDVAAQEHTVAVLKKTL-----MSNNLPHMLFYGPPGTGK 75

Query: 68  TTLAQVVAR-------------ELGVNFRSTSGPVIAKAGDLAAL-LTNLEDR------D 107
           T+    +AR             EL  +       V  K  + A L +TN ++        
Sbjct: 76  TSTILALARQLFGPELMKTRVLELNASDERGISVVREKIKNFAKLAVTNPKEGFPCPPFK 135

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA-TTRVGLL 166
           ++ +DE   ++   +  L   ME +                   SR T        V  +
Sbjct: 136 IIILDEADSMTQDAQSALRRIMEQY-------------------SRITRFCLVCNYVTRI 176

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEA-ACEIAMRSRGTPRIAGRL 225
             PL  R     R    +    KT ++  A    ++  D      +   S G  R A   
Sbjct: 177 IEPLASRCS-KFRFRSLDTSSTKTRLEMIASAESVSFQDSTVLDTLISTSDGDLRRAITY 235

Query: 226 LRRVRDFAEVAHAKT 240
           L+       +A  + 
Sbjct: 236 LQSASRLHSIAGDEK 250


>gi|255558610|ref|XP_002520330.1| replication factor C / DNA polymerase III gamma-tau subunit,
           putative [Ricinus communis]
 gi|223540549|gb|EEF42116.1| replication factor C / DNA polymerase III gamma-tau subunit,
           putative [Ricinus communis]
          Length = 342

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 48/242 (19%), Positives = 82/242 (33%), Gaps = 46/242 (19%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           ++  +      +   RP+ +++   Q E    L   +E +        H+LF GPPG GK
Sbjct: 1   MAPILQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETS-----NCPHMLFYGPPGTGK 55

Query: 68  TTLAQVVAR-------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------- 106
           TT A  +A              EL  +       V  K  + AA+      R        
Sbjct: 56  TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKNFAAVAVGSGQRAGGYPCPP 115

Query: 107 -DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
             ++ +DE   ++   +  L   ME +                  ++RF        +  
Sbjct: 116 YKIIILDEADSMTEDAQNALRRTMETYS----------------KVTRFFF--LCNYISR 157

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           +  PL  R     R      E + + V    +  GL +  EA   ++  S+G  R A   
Sbjct: 158 IIEPLASRCA-KFRFKPLSEEIMSSRVLHICREEGLNLDAEALSTLSYVSQGDLRRAITY 216

Query: 226 LR 227
           L+
Sbjct: 217 LQ 218


>gi|320323485|gb|EFW79570.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320329472|gb|EFW85464.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 737

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 68/329 (20%), Positives = 98/329 (29%), Gaps = 67/329 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPR+  E  GQ      LK  I A    ++ L H  LF G  G+GKTT+A+++A+ L   
Sbjct: 11  RPRSFREMVGQAHV---LKALINA--LDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNCE 65

Query: 82  FRSTS------------------------GPVIAKAGDLAALLTNLE------DRDVLFI 111
              TS                             K  D   LL N++         V  I
Sbjct: 66  TGITSTPCGTCSVCKEIDEGRFVDLIEIDAASRTKVEDTRELLDNVQYVPSRGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         I ATT    L   + 
Sbjct: 126 DEVHMLSSHSFNALLKTLEE------------------PPPYVKFILATTDPQKLPATIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L     E +   +     +  +   D+A   +   + G+ R A  L  +   
Sbjct: 168 SRC-LQFSLKNMTPERVVEHLTHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAIA 226

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLD-------LRYLTMIARNFGGGPVGIET 284
           F E              A+L        FD L           L  +      GP     
Sbjct: 227 FGEGK-----VMAADVRAMLGTLDHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGV 281

Query: 285 ISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
           +S  L+           P  +  G   R 
Sbjct: 282 LSEILNVLHRVAIAQALPEGVDNGHGDRD 310


>gi|262200446|ref|YP_003271654.1| DNA polymerase III subunits gamma/tau [Gordonia bronchialis DSM
           43247]
 gi|262083793|gb|ACY19761.1| DNA polymerase III, subunits gamma and tau [Gordonia bronchialis
           DSM 43247]
          Length = 774

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 44/235 (18%), Positives = 79/235 (33%), Gaps = 19/235 (8%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T  +  GQ      L   ++A +         LF GP G GKT+ A+++AR
Sbjct: 2   ALYRTYRPATFADVVGQEHVTDPLSHALDAGRINHAY----LFSGPRGCGKTSSARILAR 57

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            L      TS P       +A       + DV+ +D      +     + +   Y   E 
Sbjct: 58  SLNCVQGPTSTPCGECVSCVALAPGGPGNLDVIELDAASHGGVDDTRELRDRAFYAPAES 117

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                +V E             + V+        + ATT    +   ++ R         
Sbjct: 118 RYRVFIVDEAHMVTNAGFNALLKIVEEPPEHLIFVFATTEPEKVLPTIRSR-THHYPFRL 176

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                ++ +++R      + V  E    +     G+PR +  +L ++   A+   
Sbjct: 177 LAPPVMRGLLERICAQEHVTVAPEVYPLVIRAGGGSPRDSLSILDQLLAGADDRG 231


>gi|302024613|ref|ZP_07249824.1| recombination factor protein RarA [Streptococcus suis 05HAS68]
          Length = 378

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 90/278 (32%), Gaps = 48/278 (17%)

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PP LG T  A         N +           ++A          VL +DEIHRL+   
Sbjct: 7   PPLLGTTKYAFRTFNATTDNQKRLQ--------EIAEE-AKFSGGLVLMLDEIHRLNKTK 57

Query: 122 EEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           ++ L P +E+  + ++    E P    +    SR  +                       
Sbjct: 58  QDFLLPLLENGNIIMIGATTENPFFSILPAIRSRVQIFELQPLKTSHIRQ---------- 107

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
                +E   T  +RG     + +  EA   +A  + G  R A   L       + +   
Sbjct: 108 ----ALELALTDSERGFD-FPVTIEPEALDFLANATNGDLRAAYNSLELAVLSTKESDDG 162

Query: 240 TI--TREIADAALLRLA--IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDA 295
           +     +  + +L +    +DK G    D   L+ + ++  G  V              +
Sbjct: 163 SRHIDLDAVENSLQKSYISMDKNGDAHYD--ILSALQKSIRGSDV------------NAS 208

Query: 296 IEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           +       +I+   +      R L  IA++ +G+  P 
Sbjct: 209 LHYAAR--LIEAEDLP--SLARRLTVIAYEDIGLANPE 242


>gi|33862332|ref|NP_893892.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus
           str. MIT 9313]
 gi|33640445|emb|CAE20234.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus
           str. MIT 9313]
          Length = 606

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 83/221 (37%), Gaps = 19/221 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  +   GQ    + L   + +++         LF GP G GKT+ A+++AR L    
Sbjct: 13  RPQRFDALVGQDAIAATLSHALRSSRIA----PAYLFSGPRGTGKTSSARILARSLNCLN 68

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P      +L   +      DV+ ID      +  +  ++E   +  ++      +
Sbjct: 69  CDQPTPEPCGNCELCKSIAAGTALDVIEIDAASNTGVDNIRELIERSRFAPVQARWKVYV 128

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           V E             ++++    R   + ATT    +   +  R           +E L
Sbjct: 129 VDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTILSRCQ-RFDFRRIPLEAL 187

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           +  ++  A    + +  EA   +A R++G  R A  LL ++
Sbjct: 188 EQHLEMIATREAIPIEPEALHVVAQRAQGGLRDAESLLDQL 228


>gi|269955062|ref|YP_003324851.1| DNA polymerase III subunits gamma and tau [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269303743|gb|ACZ29293.1| DNA polymerase III, subunits gamma and tau [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 926

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 61/175 (34%), Gaps = 22/175 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T  E  GQ      L   + + +         LF GP G GKTT A+++AR
Sbjct: 4   ALYRRYRPETFAEVIGQEHVTGPLMQALRSGRVNHAY----LFSGPRGCGKTTSARILAR 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR----DVLFIDEIHRLSIIVEEILY------ 126
            L  +  +   P+    G   + +          DV+ ID      +     L       
Sbjct: 60  TLNCHANTPQTPLDTPCGVCPSCVELARGGSGSLDVVEIDAASHGGVDDARDLRERATFA 119

Query: 127 PAMEDFQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           PA + +++ ++         G     + V+        + ATT    +   ++ R
Sbjct: 120 PARDRYKIFIIDEAHMVSPAGFNALLKIVEEPPPHIKFVFATTEPDKVIGTIRSR 174


>gi|124021779|ref|YP_001016086.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus
           str. MIT 9303]
 gi|123962065|gb|ABM76821.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus
           str. MIT 9303]
          Length = 604

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 83/221 (37%), Gaps = 19/221 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  +   GQ    + L   + +++         LF GP G GKT+ A+++AR L    
Sbjct: 13  RPQRFDALVGQDAIAATLSHALRSSRIA----PAYLFSGPRGTGKTSSARILARSLNCLN 68

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P      +L   +      DV+ ID      +  +  ++E   +  ++      +
Sbjct: 69  CDQPTPEPCGNCELCKSIAAGTALDVIEIDAASNTGVDNIRELIERSRFAPVQARWKVYV 128

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           V E             ++++    R   + ATT    +   +  R           +E L
Sbjct: 129 VDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTILSRCQ-RFDFRRIPLEAL 187

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           +  ++  A    + +  EA   +A R++G  R A  LL ++
Sbjct: 188 EKHLEMIATREAIPINPEALHVVAQRAQGGLRDAESLLDQL 228


>gi|315650373|ref|ZP_07903444.1| DNA polymerase III, gamma/tau subunit DnaX [Eubacterium saburreum
           DSM 3986]
 gi|315487300|gb|EFU77611.1| DNA polymerase III, gamma/tau subunit DnaX [Eubacterium saburreum
           DSM 3986]
          Length = 515

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 53/262 (20%), Positives = 90/262 (34%), Gaps = 21/262 (8%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP   +E  GQ      LK  +   +         LF G  G GKT++A+++AR
Sbjct: 5   ALYRKFRPSNFDEVVGQEAITKTLKNQLRTGRVSHAY----LFCGTRGTGKTSIAKIMAR 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            L     + +GP   +     ++L       V+ ID      +  +  I E++ YP    
Sbjct: 61  ALNCEHPTEAGP-CNECPTCKSILNETSIN-VVEIDAASNNGVDNIRDIKEQVQYPPTFG 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT V  +   +  R         
Sbjct: 119 RYKVFIIDEVHMLSGGAFNALLKTLEEPPQYVIFILATTEVHKIPVTVLSRCQRYDFKRI 178

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
             I+ +   ++   K  G+ + D A   IA  + G  R A  LL     F +        
Sbjct: 179 -GIDTISQRLKTLCKSEGVDIEDRAVDYIAKAADGAMRDALSLLDECISFLQNEKITFDA 237

Query: 243 REIADAALLRLAIDKMGFDQLD 264
                 A      +K+  D +D
Sbjct: 238 VLDILGASDISIFNKLLDDIID 259


>gi|312962441|ref|ZP_07776932.1| DNA polymerase III, gamma and tau subunits [Pseudomonas fluorescens
           WH6]
 gi|311283368|gb|EFQ61958.1| DNA polymerase III, gamma and tau subunits [Pseudomonas fluorescens
           WH6]
          Length = 684

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 55/245 (22%), Positives = 80/245 (32%), Gaps = 55/245 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPR+  E  GQ      LK  I A    ++ L H  LF G  G+GKTT+A+++A+ L   
Sbjct: 11  RPRSFREMVGQTHV---LKALINA--LDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNCE 65

Query: 82  FRSTS------------------------GPVIAKAGDLAALLTNLE------DRDVLFI 111
              TS                             K  D   LL N++         V  I
Sbjct: 66  TGITSTPCGTCSVCREIDEGRFVDLIEIDAASRTKVEDTRELLDNVQYAPSRGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         I ATT    L   + 
Sbjct: 126 DEVHMLSSHSFNALLKTLEE------------------PPPYVKFILATTDPQKLPATIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L     E +   +     +  +   D+A   +   + G+ R A  L  +   
Sbjct: 168 SRC-LQFSLKNMTPERVVEHLTHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAIA 226

Query: 232 FAEVA 236
           F E  
Sbjct: 227 FGEGK 231


>gi|283834204|ref|ZP_06353945.1| DNA polymerase III subunit tau [Citrobacter youngae ATCC 29220]
 gi|291070357|gb|EFE08466.1| DNA polymerase III subunit tau [Citrobacter youngae ATCC 29220]
          Length = 641

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 90/249 (36%), Gaps = 25/249 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++   +    + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++   K   +A    A   +A  + G+ R A  L     D A  +    ++ +    
Sbjct: 184 RHQLEHILKEEHIAHEPRALQLLARAADGSLRDALSL----TDQAIASGDGQVSTDAVST 239

Query: 249 ALLRLAIDK 257
            L  L  D+
Sbjct: 240 MLGTLDDDQ 248


>gi|326203839|ref|ZP_08193701.1| Sigma 54 interacting domain protein [Clostridium papyrosolvens DSM
           2782]
 gi|325985937|gb|EGD46771.1| Sigma 54 interacting domain protein [Clostridium papyrosolvens DSM
           2782]
          Length = 560

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 63/339 (18%), Positives = 102/339 (30%), Gaps = 63/339 (18%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           R +   +      RP TL +  GQ +    L+  +  A  +     HV+  GPPG+GKT 
Sbjct: 50  REIHLTEPLSEKTRPATLSDIVGQEQGLKALRAALCGANPQ-----HVIIYGPPGVGKTA 104

Query: 70  LAQVVARELGVNFRSTS----------------------GPVIAKAGD------------ 95
            A+V+  E   N  S                         P+I    D            
Sbjct: 105 AARVILEEAKKNSMSPFRKEAKFIEMDATTLRFDERGIADPLIGSVHDPIYQGAGAYGVA 164

Query: 96  -----LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN 150
                    +T      VLFIDEI  L  I    L   +ED ++  +     SA    I 
Sbjct: 165 GIPQPKQGAVTKAHGG-VLFIDEIGELHSIQMNKLLKVLEDRKV-YLESAYYSAEDNSIP 222

Query: 151 -----------LSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199
                       + F L+ ATTR             + I       +++  I +  A   
Sbjct: 223 SHIHEIFQKGLPADFRLVGATTRTPDEIPAAIRSRCVEIHFRSLRSDEICKICENAAVKG 282

Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259
           G  +      E+  R     R A  +++     + + +   I  +  +  +         
Sbjct: 283 GFNLKP-GCSELVSRYAQNGRDAVNIIQIAGGVSMIENRSVIDIKDIEWVIEFGHYSPR- 340

Query: 260 FDQLDLRYLTMI-ARNFGGGPVGIETISAGLSEPRDAIE 297
              LD +           G  V  ++    +     AI 
Sbjct: 341 ---LDKKISPANQIGCINGLAVFGDSTGMVIDVEVTAIP 376


>gi|51467970|ref|NP_001003862.1| replication factor C subunit 5 [Danio rerio]
 gi|49618977|gb|AAT68073.1| replication factor C subunit RFC5 [Danio rerio]
 gi|220673394|emb|CAX13672.1| replication factor C (activator 1) 5 [Danio rerio]
          Length = 334

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 42/241 (17%), Positives = 74/241 (30%), Gaps = 41/241 (17%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           ++  ++    +   RP+TL++     +  S ++ FI       + L H+LF GPPG GKT
Sbjct: 7   TQPQARNLPWVEKYRPQTLDDLISHQDILSTIQKFIS-----EDRLPHLLFYGPPGTGKT 61

Query: 69  TLAQVVAR------ELGVNFRSTSGPVIAKAGDLAA-LLTNLEDRDVL-------FIDEI 114
           +     AR      E        +         +   +L+    R +         +DE 
Sbjct: 62  STILACARQLYKDKEFNSMVLELNASDDRGIDVVRGPILSFASTRTIFKKGFKLVILDEA 121

Query: 115 HRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRF 174
             ++   +  L   +E F       E      +   LS+      +        PL    
Sbjct: 122 DAMTQDAQNALRRVIEKF------TENTRFCLICNYLSKIIPALQSRCTRFRFGPLSQNQ 175

Query: 175 GIPIRLNF-------YEIEDLKTIV-------QRGAKLTGLAVTDEAA--CEIAMRSRGT 218
            IP   +           + +K IV       +R   +             E      G 
Sbjct: 176 MIPRLEHVIQQESIDITPDGMKAIVTLSTGDMRRSLNILQSTHMAYGKVTEETVYTCTGH 235

Query: 219 P 219
           P
Sbjct: 236 P 236


>gi|332818666|ref|XP_003310208.1| PREDICTED: replication factor C subunit 4 isoform 1 [Pan
           troglodytes]
 gi|332818668|ref|XP_003310209.1| PREDICTED: replication factor C subunit 4 isoform 2 [Pan
           troglodytes]
          Length = 363

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 77/234 (32%), Gaps = 45/234 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+ ++E   Q E  + LK  +E A      L ++LF GPPG GKT+     AR
Sbjct: 39  PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGAD-----LPNLLFYGPPGTGKTSTILAAAR 93

Query: 77  -------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD--------VLFIDEIH 115
                        EL  +       V  K  + A L  +    D        ++ +DE  
Sbjct: 94  ELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEAD 153

Query: 116 RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
            ++   +  L   ME                     +RF        V  +  PL  R  
Sbjct: 154 SMTSAAQAALRRTMEKESKT----------------TRF--CLICNYVSRIIEPLTSRCS 195

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
              R      +  +  +   AK   + ++DE    +   S G  R A   L+  
Sbjct: 196 -KFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSA 248


>gi|71734194|ref|YP_274019.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71554747|gb|AAZ33958.1| DNA polymerase III, subunits gamma and tau [Pseudomonas syringae
           pv. phaseolicola 1448A]
          Length = 737

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 68/329 (20%), Positives = 98/329 (29%), Gaps = 67/329 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPR+  E  GQ      LK  I A    ++ L H  LF G  G+GKTT+A+++A+ L   
Sbjct: 11  RPRSFREMVGQAHV---LKALINA--LDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNCE 65

Query: 82  FRSTS------------------------GPVIAKAGDLAALLTNLE------DRDVLFI 111
              TS                             K  D   LL N++         V  I
Sbjct: 66  TGITSTPCGTCSVCKEIDEGRFVDLIEIDAASRTKVEDTRELLDNVQYAPSRGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         I ATT    L   + 
Sbjct: 126 DEVHMLSSHSFNALLKTLEE------------------PPPYVKFILATTDPQKLPATIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L     E +   +     +  +   D+A   +   + G+ R A  L  +   
Sbjct: 168 SRC-LQFSLKNMTPERVVEHLTHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAIA 226

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLD-------LRYLTMIARNFGGGPVGIET 284
           F E              A+L        FD L           L  +      GP     
Sbjct: 227 FGEGK-----VMAADVRAMLGTLDHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGV 281

Query: 285 ISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
           +S  L+           P  +  G   R 
Sbjct: 282 LSEILNVLHRVAIAQALPEGVDNGHGDRD 310


>gi|77458032|ref|YP_347537.1| DNA polymerase III subunits gamma and tau [Pseudomonas fluorescens
           Pf0-1]
 gi|77382035|gb|ABA73548.1| DNA polymerase III subunit Tau [Pseudomonas fluorescens Pf0-1]
          Length = 696

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 53/231 (22%), Positives = 85/231 (36%), Gaps = 27/231 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPR+  E  GQ      LK  I A    ++ L H  LF G  G+GKTT+A+++A+ L   
Sbjct: 11  RPRSFREMVGQTHV---LKALINA--LDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILY------PAMEDFQ 133
              TS P     G+ +      E R  D++ ID   R  +     L       P+   F+
Sbjct: 66  TGITSSP----CGECSVCREIDEGRFVDLIEIDAASRTKVEDTRELLDNVQYAPSRGRFK 121

Query: 134 LDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           + L+               ++++        I ATT    L   +  R  +   L     
Sbjct: 122 VYLIDEVHMLSSHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSRC-LQFSLKNMTP 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
           E +   +        +   D+A   +   + G+ R A  L  +   F E  
Sbjct: 181 ERVVEHLTHVLGAENVPFEDDALWLLGRAADGSMRDAMSLTDQAIAFGEGK 231


>gi|50543016|ref|XP_499674.1| YALI0A02068p [Yarrowia lipolytica]
 gi|49645539|emb|CAG83597.1| YALI0A02068p [Yarrowia lipolytica]
          Length = 358

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 78/225 (34%), Gaps = 36/225 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP TL++ TG     + LK  +   K       H+LF GPPG GKT+    VAR
Sbjct: 30  PWVEKYRPDTLDDVTGHEGVVTTLKKLLANKK-----FPHLLFYGPPGTGKTSTILAVAR 84

Query: 77  E-LGVNFRSTSGPV-------IAKAGDLAALLTNLED-------------RDVLFIDEIH 115
           E  G +++S    +       I    D   +  +                  ++ +DE  
Sbjct: 85  EIYGPSYKSMVLELNASDDRGIDVVRDQIKVFASSRQIFQRGGEENARSNFKLVILDEAD 144

Query: 116 RLSIIVEEILYPAMEDFQLD--LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
            ++ + +  L   +E +       +    + +     LSR T      R   L     D+
Sbjct: 145 AMTNVAQNALRRVIEQYTTHTRFCILANYTHKLNPALLSRCTRF----RFSPLPEAAIDK 200

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGT 218
                 +   + E +K      A L  L+  D       +++  T
Sbjct: 201 R----IMQVIDAEKVKIAPDAKAALLELSKGDMRRALNVLQACHT 241


>gi|332800257|ref|YP_004461756.1| DNA polymerase III subunits gamma and tau [Tepidanaerobacter sp.
           Re1]
 gi|332697992|gb|AEE92449.1| DNA polymerase III, subunits gamma and tau [Tepidanaerobacter sp.
           Re1]
          Length = 599

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 49/250 (19%), Positives = 79/250 (31%), Gaps = 53/250 (21%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP+  +E  GQ    + LK  +++ K         LF G  G GKT+ A+V A+
Sbjct: 5   ALYRKYRPQNFDEIVGQKAIVTTLKNQLKSGKIAHAY----LFCGMRGTGKTSTARVFAK 60

Query: 77  ELGVNF------------------------RSTSGPVIAKAGDLAALLTNL------EDR 106
            L                                        D+  L   +         
Sbjct: 61  ALNCEKGPIENPCNTCASCKAITSGNMMDVIEMDAASNRGIDDIRDLREKVNFAPSEGRY 120

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
            +  IDE+H L+      L   +E+                         I ATT    L
Sbjct: 121 KIYIIDEVHMLTTEAFNALLKTLEE------------------PPKYVIFILATTEPDKL 162

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
              +  R            E +   +++ A+ + + V D+A  +IA  S+G+ R A  LL
Sbjct: 163 PPTILSRCMRFDFKRITTSE-IAERLKKVAQDSEIDVDDKALLQIAAHSQGSVRDALSLL 221

Query: 227 RRVRDFAEVA 236
            +   F +  
Sbjct: 222 DKAMAFGKGK 231


>gi|15828520|ref|NP_325880.1| DNA polymerase III subunits gamma and tau [Mycoplasma pulmonis UAB
           CTIP]
 gi|14089462|emb|CAC13222.1| DNA POLYMERASE III SUBUNIT GAMMA AND TAU [Mycoplasma pulmonis]
          Length = 836

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 46/257 (17%), Positives = 78/257 (30%), Gaps = 56/257 (21%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH-VLFVGPPGLGKTTLAQVVA 75
           A   + RP T +E  GQ    + LK  I         + H  LF GP G GKT++A++ A
Sbjct: 26  ALYRVYRPTTFDEVNGQDHIVATLKNII-----LTNKISHGYLFNGPRGTGKTSVAKIFA 80

Query: 76  RELGVNFR---------------------STSGPVIAKAGDLAALLTNLE------DRDV 108
             L    +                                D+  L   L+      +  +
Sbjct: 81  TALNCIHKNDDFNPCQICIENSNKNIDIIEMDAASNNSVDDVRRLNEELKSLPLKGEYRI 140

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
             IDE+H  +      L  ++E+                         I ATT    + N
Sbjct: 141 YIIDEVHMFTKSAFNALLKSLEE------------------PPKHVIFIFATTESHKIPN 182

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            +  R            + +   +    +   +    ++   IA  + G+ R A  +   
Sbjct: 183 TILSRVQ-RFNFRRISNDVIIGHLANILEKEKINYEPKSLVYIASLASGSFRDALSI--- 238

Query: 229 VRDFAEVAHAKTITREI 245
             D A +     IT + 
Sbjct: 239 -ADQASIYGQGKITLKN 254


>gi|332098642|gb|EGJ03608.1| DNA polymerase III, subunits gamma and tau [Shigella boydii
           3594-74]
          Length = 463

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 53/306 (17%), Positives = 107/306 (34%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++        + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +A    A   +A  + G+ R A  L     D A  +    ++ +   A
Sbjct: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAIASGDGQVSTQAVSA 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L  D+       L  +  +    G   + +   +A      +A+   +   + +  
Sbjct: 240 MLGTLDDDQA------LSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIA 293

Query: 309 FIQRTP 314
            +Q +P
Sbjct: 294 MVQLSP 299


>gi|330973302|gb|EGH73368.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 461

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 68/329 (20%), Positives = 98/329 (29%), Gaps = 67/329 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPR+  E  GQ      LK  I A    ++ L H  LF G  G+GKTT+A+++A+ L   
Sbjct: 11  RPRSFREMVGQAHV---LKALINA--LDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNCE 65

Query: 82  FRSTS------------------------GPVIAKAGDLAALLTNLE------DRDVLFI 111
              TS                             K  D   LL N++         V  I
Sbjct: 66  TGITSTPCGTCSVCKEIDEGRFVDLIEIDAASRTKVEDTRELLDNVQYAPSRGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         I ATT    L   + 
Sbjct: 126 DEVHMLSSHSFNALLKTLEE------------------PPPYVKFILATTDPQKLPATIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L     E +   +     +  +   D+A   +   + G+ R A  L  +   
Sbjct: 168 SRC-LQFSLKNMTPERVVEHLTHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAIA 226

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLD-------LRYLTMIARNFGGGPVGIET 284
           F E              A+L        FD L           L  +      GP     
Sbjct: 227 FGEGK-----VMAADVRAMLGTLDHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGV 281

Query: 285 ISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
           +S  L+           P  +  G   R 
Sbjct: 282 LSEILNVLHRVAIAQALPEGVDNGHGDRD 310


>gi|213405245|ref|XP_002173394.1| replication factor C subunit 3 [Schizosaccharomyces japonicus
           yFS275]
 gi|212001441|gb|EEB07101.1| replication factor C subunit 3 [Schizosaccharomyces japonicus
           yFS275]
          Length = 338

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 69/237 (29%), Gaps = 21/237 (8%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
            +          +   RP+ L++     +  + L+ FI   +     + H+LF GPPG G
Sbjct: 11  FVKPETQDTLPWVEKYRPKNLDDVVAHKDIIATLEKFISTNR-----VPHMLFYGPPGTG 65

Query: 67  KTTLAQVVAR-----ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           KT+     A               +         +   + +                I  
Sbjct: 66  KTSTILACANRIYGPNFRNQVMELNASDDRGIDVVREQIKSF----------ASTKQIFS 115

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
                  +++     +  +    R ++              +  +   +Q R     R  
Sbjct: 116 SAFKLIILDETDAMTLAAQNALRRVIEKYTRNVRFCIICNYINKIAPAIQSRC-TRFRFQ 174

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
              I +++  V   A+     ++ E    +   S+G  R A  +L+      +V   
Sbjct: 175 PLPITEIEKKVDEVAEKENCTISPEGKTALLRLSKGDMRKALNILQACHAVYDVVDE 231


>gi|139438753|ref|ZP_01772237.1| Hypothetical protein COLAER_01240 [Collinsella aerofaciens ATCC
           25986]
 gi|133775833|gb|EBA39653.1| Hypothetical protein COLAER_01240 [Collinsella aerofaciens ATCC
           25986]
          Length = 825

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 60/304 (19%), Positives = 109/304 (35%), Gaps = 40/304 (13%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVV 74
           ++     RP T +   GQ    S L+  I   +     L H  LF GP G GKTT+A+++
Sbjct: 2   ESLYRKYRPLTFDSVVGQQHIVSTLEHAITEGR-----LSHAYLFCGPRGTGKTTMARIL 56

Query: 75  ARELGVNFRS------TSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL--SIIVEEIL- 125
           A+ L             SG +   A +   L+      DV  +D   R     + EEI+ 
Sbjct: 57  AKALLCRNAEAARAEGASGCLPDGACEECELIAEGNHPDVYELDAASRTGVDNVREEIIN 116

Query: 126 ---YPAMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
              +  +       ++ E             ++++   +    +  TT    +   +  R
Sbjct: 117 SVNFAPVRGKYKIYIIDEVHMLTTAAFNALLKTLEEPPAHVIFVLCTTDPQKILETILSR 176

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                  +    ED++  +    +  G    DEA   +A  ++G  R A   L ++  F 
Sbjct: 177 CQ-RFDFHRIGNEDIEHRLSYVCEQEGFDYDDEALAIVARHAKGGMRDALSTLEQLSVF- 234

Query: 234 EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
                 ++  + A + L  ++   +G       +   IA        G+  I A + E  
Sbjct: 235 ---GNGSVHADDARSLLGEVSDQILG------EFSRAIADRDVAELYGL--IRAQVEEGN 283

Query: 294 DAIE 297
           D +E
Sbjct: 284 DLLE 287


>gi|56698372|ref|YP_168745.1| DNA polymerase III subunits gamma and tau [Ruegeria pomeroyi DSS-3]
 gi|56680109|gb|AAV96775.1| DNA polymerase III, gamma and tau subunits [Ruegeria pomeroyi
           DSS-3]
          Length = 583

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 64/313 (20%), Positives = 108/313 (34%), Gaps = 33/313 (10%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           +     +         RP T  +  GQ      LK    A +         +  G  G G
Sbjct: 1   MSDAPSTPYQVLARKYRPETFADLVGQDAMVRTLKNAFAADRIAQA----FIMTGIRGTG 56

Query: 67  KTTLAQVVARELGV-NFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEE 123
           KTT A+++A+ +         GP     G     +  +E R  DV+ +D   R  +    
Sbjct: 57  KTTTARIIAKGMNCIGPDGNGGPTTEPCGKCEHCVAIMEGRHVDVMEMDAASRTGVNDIR 116

Query: 124 IL-----YPAMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNP 169
            +     Y A        ++ E             ++++   +    I ATT +  +   
Sbjct: 117 EIIDSVRYRAASARYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVT 176

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           +  R      L   E ED+  +++R A   G  + ++A   I   + G+ R A  LL   
Sbjct: 177 VLSRCQ-RFDLRRIEPEDMIALMRRIADAEGAQIAEDALALIVRAAEGSARDATSLL--- 232

Query: 230 RDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV-GIETISAG 288
            D A    A   + E   A L      ++  D +D     MI R   G  +  +    A 
Sbjct: 233 -DQAISHGAGETSAEQVRAMLGLADRGRV-LDLMD-----MILRGDAGAALTELGAQYAE 285

Query: 289 LSEPRDAIEDLIE 301
            ++P   + DL E
Sbjct: 286 GADPMAVLRDLAE 298


>gi|326390316|ref|ZP_08211875.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325993593|gb|EGD52026.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 518

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 49/263 (18%), Positives = 91/263 (34%), Gaps = 27/263 (10%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
              RPR+ +E  GQ      LK  I+  K         LF G  G GKT++A++ A+ + 
Sbjct: 7   RKYRPRSFKEVVGQEHIVRTLKNQIKLKKIGHAY----LFTGTRGTGKTSVAKIFAKAVN 62

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII-----VEEILYPAMEDFQL 134
                   P  +   ++   + N    DVL ID     S+       E ++Y        
Sbjct: 63  CLNNKDGEPCNSC--EICQAINNNTTMDVLEIDAASNNSVNDVRELRESVIYSPSIAKYK 120

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             ++ E             ++++        I ATT    L + +  R            
Sbjct: 121 VYIIDEVHMLSTGAFNALLKTLEEPPPHVIFILATTEPDKLPDTILSRCQ-RFDFKKIPT 179

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
             +   +++    + + + ++    IA+   G+ R A  LL +   + E      IT E 
Sbjct: 180 RLIAQNLEKICIDSNIKIEEKGLKTIALYGNGSMRDAISLLEQCASYKE----GLITYED 235

Query: 246 ADAALLRLAIDKMG--FDQLDLR 266
               L     + +    D ++ +
Sbjct: 236 VCEMLGVANDEMLFSLLDYMNAK 258


>gi|257484501|ref|ZP_05638542.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|331013236|gb|EGH93292.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 737

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 68/329 (20%), Positives = 98/329 (29%), Gaps = 67/329 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPR+  E  GQ      LK  I A    ++ L H  LF G  G+GKTT+A+++A+ L   
Sbjct: 11  RPRSFREMVGQAHV---LKALINA--LDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNCE 65

Query: 82  FRSTS------------------------GPVIAKAGDLAALLTNLE------DRDVLFI 111
              TS                             K  D   LL N++         V  I
Sbjct: 66  TGITSTPCGTCSVCKEIDEGRFVDLIEIDAASRTKVEDTRELLDNVQYAPSRGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         I ATT    L   + 
Sbjct: 126 DEVHMLSSHSFNALLKTLEE------------------PPPYVKFILATTDPQKLPATIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L     E +   +     +  +   D+A   +   + G+ R A  L  +   
Sbjct: 168 SRC-LQFSLKNMTPERVVEHLTHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAIA 226

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLD-------LRYLTMIARNFGGGPVGIET 284
           F E              A+L        FD L           L  +      GP     
Sbjct: 227 FGEGK-----VMAADVRAMLGTLDHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGV 281

Query: 285 ISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
           +S  L+           P  +  G   R 
Sbjct: 282 LSEILNVLHRVAIAQALPEGVDNGHGDRD 310


>gi|227832004|ref|YP_002833711.1| DNA polymerase III, gamma and tau subunit [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227453020|gb|ACP31773.1| DNA polymerase III, gamma and tau subunit [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 868

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 81/233 (34%), Gaps = 23/233 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T  E  GQ +  + L   ++A +         LF GP G GKT+ A+++AR
Sbjct: 2   ALYRKYRPATFAEVVGQEQVTTPLSAALDAGRINHAY----LFSGPRGCGKTSSARIMAR 57

Query: 77  ELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PA 128
            L      TS P  V      LA       + DV  +D      +     L       PA
Sbjct: 58  SLNCEQGPTSTPCGVCDSCVSLAP--GGPGNLDVTELDAASHNGVEDMRELRDRAYYAPA 115

Query: 129 MEDFQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
              +++ ++         G     + V+        I ATT    +   ++ R       
Sbjct: 116 ESRYRIFIIDEAHMISASGANALLKVVEEPPEHVIFIFATTEPEKIIGTIRSR-THHYPF 174

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                  +K +++R      + V D     +     G+PR    +L ++   A
Sbjct: 175 RLLTPPAMKGLLERTVASENVHVDDTVYPMVIQAGGGSPRDTLSILDQLLAGA 227


>gi|103486288|ref|YP_615849.1| DNA polymerase III subunits gamma and tau [Sphingopyxis alaskensis
           RB2256]
 gi|98976365|gb|ABF52516.1| DNA polymerase III, subunits gamma and tau [Sphingopyxis alaskensis
           RB2256]
          Length = 565

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 60/312 (19%), Positives = 101/312 (32%), Gaps = 37/312 (11%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+T  E  GQ      L   I    AR       L  G  G+GKT+ A+++A+ L
Sbjct: 33  ARKYRPQTFAELIGQDAMVKTLGNAI----ARDRLAHAFLMTGVRGVGKTSTARLIAKAL 88

Query: 79  GV-NFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSI-----IVEEILYPAME 130
                    GP I   G         E R  DV+ +D      +     I+E + Y A+ 
Sbjct: 89  NCIGPDGQGGPTIDPCGVCEPCRAITEGRHIDVIEMDAASNTGVDDVREIIEAVRYAAVS 148

Query: 131 DFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
                 ++ E             ++++        + ATT V  +   +  R      L 
Sbjct: 149 ARYKIYIIDEVHMLSRNAFNALLKTLEEPPPHVKFLFATTEVNKVPVTVLSRCQ-RFDLR 207

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
               + L        +  G+     A   IA  + G+ R    +L +    A++     +
Sbjct: 208 RITPDMLFAHFSAILQKEGVEAEAPAIWLIANAAEGSVRDGLSILDQAIAHADLDGGGKV 267

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           + E   A L       +         +  I     GG + +      L          IE
Sbjct: 268 SAEQVRAMLGLSDRSSIA------GLMAAILEGNSGGAIDLARAQYALG---------IE 312

Query: 302 PYMIQQGFIQRT 313
           P  + +G ++ T
Sbjct: 313 PVAMVRGLMELT 324


>gi|330986180|gb|EGH84283.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 733

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 68/329 (20%), Positives = 98/329 (29%), Gaps = 67/329 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPR+  E  GQ      LK  I A    ++ L H  LF G  G+GKTT+A+++A+ L   
Sbjct: 11  RPRSFREMVGQAHV---LKALINA--LDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNCE 65

Query: 82  FRSTS------------------------GPVIAKAGDLAALLTNLE------DRDVLFI 111
              TS                             K  D   LL N++         V  I
Sbjct: 66  TGITSTPCGTCSVCKEIDEGRFVDLIEIDAASRTKVEDTRELLDNVQYAPSRGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         I ATT    L   + 
Sbjct: 126 DEVHMLSSHSFNALLKTLEE------------------PPPYVKFILATTDPQKLPATIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L     E +   +     +  +   D+A   +   + G+ R A  L  +   
Sbjct: 168 SRC-LQFSLKNMTPERVVEHLTHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAIA 226

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLD-------LRYLTMIARNFGGGPVGIET 284
           F E              A+L        FD L           L  +      GP     
Sbjct: 227 FGEGK-----VMAADVRAMLGTLDHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGV 281

Query: 285 ISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
           +S  L+           P  +  G   R 
Sbjct: 282 LSEILNVLHRVAIAQALPEGVDNGHGDRD 310


>gi|298486349|ref|ZP_07004411.1| DNA polymerase III subunits gamma and tau [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|298159077|gb|EFI00136.1| DNA polymerase III subunits gamma and tau [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
          Length = 737

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 68/329 (20%), Positives = 98/329 (29%), Gaps = 67/329 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPR+  E  GQ      LK  I A    ++ L H  LF G  G+GKTT+A+++A+ L   
Sbjct: 11  RPRSFREMVGQAHV---LKALINA--LDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNCE 65

Query: 82  FRSTS------------------------GPVIAKAGDLAALLTNLE------DRDVLFI 111
              TS                             K  D   LL N++         V  I
Sbjct: 66  TGITSTPCGTCSVCKEIDEGRFVDLIEIDAASRTKVEDTRELLDNVQYAPSRGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         I ATT    L   + 
Sbjct: 126 DEVHMLSSHSFNALLKTLEE------------------PPPYVKFILATTDPQKLPATIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L     E +   +     +  +   D+A   +   + G+ R A  L  +   
Sbjct: 168 SRC-LQFSLKNMTPERVVEHLTHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAIA 226

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLD-------LRYLTMIARNFGGGPVGIET 284
           F E              A+L        FD L           L  +      GP     
Sbjct: 227 FGEGK-----VMAADVRAMLGTLDHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGV 281

Query: 285 ISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
           +S  L+           P  +  G   R 
Sbjct: 282 LSEILNVLHRVAIAQALPEGVDNGHGDRD 310


>gi|319655048|ref|ZP_08009118.1| DnaX protein [Bacillus sp. 2_A_57_CT2]
 gi|317393272|gb|EFV74040.1| DnaX protein [Bacillus sp. 2_A_57_CT2]
          Length = 565

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 64/299 (21%), Positives = 107/299 (35%), Gaps = 38/299 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+   +  GQ      L+  +       E + H  LF GP G GKT+ A+++A+ +   
Sbjct: 11  RPQQFIDVVGQEHVTKTLQNAL-----LQEKISHAYLFSGPRGTGKTSAAKILAKAVNCE 65

Query: 82  FRSTSGPVIAKAGDLAAL--LTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQL 134
                 PV     + AA   +T+    DV+ ID      +  +  I +++ Y        
Sbjct: 66  K----APVTEPCNECAACRGITDGSIPDVIEIDAASNNGVEEIRDIRDKVKYAPNAVKYK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             +V E             ++++        I ATT    +   +  R            
Sbjct: 122 VYIVDEVHMLSIGAFNALLKTLEEPPKHVIFILATTEPHKIPLTIISRCQ-RFDFKRITA 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           + +   ++  A  TG A  D+A   IA  + G  R A  LL +   F++        R  
Sbjct: 181 QAITGRMKLIADETGAAYEDQALQIIARAAEGGMRDALSLLDQAISFSQ-------DRVT 233

Query: 246 ADAALLRLAIDKMGF-DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
            + AL        GF ++L         R+   G   +E +     +P   IED I  Y
Sbjct: 234 VEDALSVTGAVSQGFLNKLARAVKD---RDAASGLGFLEELLFQGKDPARFIEDFILYY 289


>gi|307137113|ref|ZP_07496469.1| DNA polymerase III subunits gamma and tau [Escherichia coli H736]
 gi|331640993|ref|ZP_08342128.1| DNA polymerase III, subunit gamma and tau [Escherichia coli H736]
 gi|331037791|gb|EGI10011.1| DNA polymerase III, subunit gamma and tau [Escherichia coli H736]
          Length = 483

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 53/306 (17%), Positives = 107/306 (34%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++        + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +A    A   +A  + G+ R A  L     D A  +    ++ +   A
Sbjct: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAIASGDGQVSTQAVSA 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L  D+       L  +  +    G   + +   +A      +A+   +   + +  
Sbjct: 240 MLGTLDDDQA------LSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIA 293

Query: 309 FIQRTP 314
            +Q +P
Sbjct: 294 MVQLSP 299


>gi|156384148|ref|XP_001633193.1| predicted protein [Nematostella vectensis]
 gi|156220260|gb|EDO41130.1| predicted protein [Nematostella vectensis]
          Length = 329

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/248 (16%), Positives = 82/248 (33%), Gaps = 38/248 (15%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           +++    +    +   RP+ L++     +  + ++ FI       E L H+LF GPPG G
Sbjct: 2   VVAAEDKRNLPWVEKYRPKCLDDLISHTDIINTIQRFI-----NEERLPHLLFYGPPGTG 56

Query: 67  KTTLAQVVA------RELGVNFRSTSGPVIAKAGDLAA-LLTNLEDRDVL-------FID 112
           KT+    VA      ++ G      +       G +   +L+    R +         +D
Sbjct: 57  KTSTILAVAKQLYPDKQFGSMVLELNASDDRGIGIVRGDILSFASTRTIFKSGFKLVILD 116

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E   ++   +  L   ME F       E                      +  +   LQ 
Sbjct: 117 EADAMTQDAQNALRRVMEKF------TENTRF------------CLICNYLTKIIPALQS 158

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R     R     ++ +   ++   +   + VTD+    +   ++G  R    +L+     
Sbjct: 159 RC-TRFRFGPLSVDQMLPRLEHVIESERVNVTDDGRKSLLRLAQGDMRKVLNILQSTSMA 217

Query: 233 AEVAHAKT 240
             V +   
Sbjct: 218 YSVVNEDH 225


>gi|321313687|ref|YP_004205974.1| DNA polymerase III subunits gamma and tau [Bacillus subtilis BSn5]
 gi|320019961|gb|ADV94947.1| DNA polymerase III subunits gamma and tau [Bacillus subtilis BSn5]
          Length = 563

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 58/316 (18%), Positives = 108/316 (34%), Gaps = 36/316 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RP+  E+  GQ      L    + A  + +     LF GP G GKT+ A++ A+
Sbjct: 5   ALYRVFRPQRFEDVVGQEHITKTL----QNALLQKKFSHAYLFSGPRGTGKTSAAKIFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAAL--LTNLEDRDVLFID-----EIHRLSIIVEEILYPAM 129
            +         PV     + AA   +TN    DV+ ID      +  +  I +++ +   
Sbjct: 61  AVNCEH----APVDEPCNECAACKGITNGSISDVIEIDAASNNGVDEIRDIRDKVKFAPS 116

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                  ++ E             ++++        I ATT    +   +  R       
Sbjct: 117 AVTYKVYIIDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLTIISRCQ-RFDF 175

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
                + +   + +      L V + +   IA  + G  R A  LL +   F+     K 
Sbjct: 176 KRITSQAIVGRMNKIVDAEQLQVEEGSLDIIASAADGGMRDALSLLDQAISFSGDI-LKV 234

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
               +   A+ +L I K+     D      +          +  +     +P   IED+I
Sbjct: 235 EDALLITGAVSQLYIGKLAQSLHDKNVSDALET--------LNELLQQGKDPAKLIEDMI 286

Query: 301 EPYMIQQGFIQRTPRG 316
             +  +   + +T  G
Sbjct: 287 FYF--RDMLLYKTAPG 300


>gi|291482389|dbj|BAI83464.1| DNA polymerase III subunits gamma and tau [Bacillus subtilis subsp.
           natto BEST195]
          Length = 563

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 58/316 (18%), Positives = 108/316 (34%), Gaps = 36/316 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RP+  E+  GQ      L    + A  + +     LF GP G GKT+ A++ A+
Sbjct: 5   ALYRVFRPQRFEDVVGQEHITKTL----QNALLQKKFSHAYLFSGPRGTGKTSAAKIFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAAL--LTNLEDRDVLFID-----EIHRLSIIVEEILYPAM 129
            +         PV     + AA   +TN    DV+ ID      +  +  I +++ +   
Sbjct: 61  AVNCEH----APVDEPCNECAACKGITNGSISDVIEIDAASNNGVDEIRDIRDKVKFAPS 116

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                  ++ E             ++++        I ATT    +   +  R       
Sbjct: 117 AVTYKVYIIDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLTIISRCQ-RFDF 175

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
                + +   + +      L V + +   IA  + G  R A  LL +   F+     K 
Sbjct: 176 KRITSQAIVGRMNKIVDAEQLQVEEGSLDIIASAADGGMRDALSLLDQAISFSGDI-LKV 234

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
               +   A+ +L I K+     D      +          +  +     +P   IED+I
Sbjct: 235 EDALLITGAVSQLYIGKLAQSLHDKNVSDALET--------LNELLQQGKDPAKLIEDMI 286

Query: 301 EPYMIQQGFIQRTPRG 316
             +  +   + +T  G
Sbjct: 287 FYF--RDMLLYKTAPG 300


>gi|58262374|ref|XP_568597.1| DNA replication factor [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|57230771|gb|AAW47080.1| DNA replication factor, putative [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 373

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 44/235 (18%), Positives = 79/235 (33%), Gaps = 37/235 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP +L++     +  S ++ FIEA +     L H+L  GPPG GKT+    +AR
Sbjct: 55  PWVEKYRPVSLDDVVSHKDITSTIEKFIEAGR-----LPHLLLYGPPGTGKTSTVLALAR 109

Query: 77  -----ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLF--------IDEIHRLSIIVEE 123
                    +    +         +   + N     VLF        +DE   ++   + 
Sbjct: 110 RLYGPAYRKHILELNASDDRGIDVVREQIKNFAMTKVLFSKGFKLVILDEADMMTQAAQS 169

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
            L   +E                                V  +T  +Q R     R +  
Sbjct: 170 ALRRVIEQHT------------------KNVRFCILCNYVNKITPAIQSRC-TRFRFSPL 210

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
             ++++  V    +  G+ +TD+    I   SRG  R A  +L+      ++   
Sbjct: 211 PEKEIQVKVDEVVQKEGVNLTDDGRDAILKLSRGDMRRALNVLQACHAAYDIVDE 265


>gi|322823330|gb|EFZ29106.1| replication factor C, subunit 2, putative [Trypanosoma cruzi]
          Length = 347

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 58/242 (23%), Positives = 89/242 (36%), Gaps = 20/242 (8%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP TL E   Q EA   L+    A+   + ++ H LF GPPG GKTT    VAR
Sbjct: 20  PWVEKYRPMTLSEVKSQEEAVCALR----ASLQSSASMPHFLFHGPPGTGKTTAILAVAR 75

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE--ILYPAMEDFQL 134
           EL       S      A D   +    E   V     +  +   V+    +YP +  F+L
Sbjct: 76  ELFGPDYVHSRVREMNASDDRGIQVIREKVKVFAQTAVGNVGHKVQSDGQVYP-VPQFKL 134

Query: 135 DLMVGEGPSARSVKINLSRF--------TLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++          +  L R                 V  + +P+  R     R      E
Sbjct: 135 IILDEADALLPDAQAALRRMMEDFSDVTRFCILCNYVSRIIDPIASRCA-KYRFKPLVRE 193

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
            L   ++  AK+  + V+D +   +   S G  R A   L+    +A+ AH   +T+E  
Sbjct: 194 TLYDRIREIAKMEEITVSDASLEALDRVSGGDLRSAIMYLQ----YAQKAHGSDLTKENF 249

Query: 247 DA 248
             
Sbjct: 250 LE 251


>gi|238537887|pdb|3GLF|B Chain B, Crystal Structure Of The Ecoli Clamp Loader Bound To
           Primer- Template Dna
 gi|238537888|pdb|3GLF|C Chain C, Crystal Structure Of The Ecoli Clamp Loader Bound To
           Primer- Template Dna
 gi|238537889|pdb|3GLF|D Chain D, Crystal Structure Of The Ecoli Clamp Loader Bound To
           Primer- Template Dna
 gi|238537892|pdb|3GLF|G Chain G, Crystal Structure Of The Ecoli Clamp Loader Bound To
           Primer- Template Dna
 gi|238537893|pdb|3GLF|H Chain H, Crystal Structure Of The Ecoli Clamp Loader Bound To
           Primer- Template Dna
 gi|238537894|pdb|3GLF|I Chain I, Crystal Structure Of The Ecoli Clamp Loader Bound To
           Primer- Template Dna
 gi|238537930|pdb|3GLI|B Chain B, Crystal Structure Of The E. Coli Clamp Loader Bound To
           Primer-Template Dna And Psi Peptide
 gi|238537931|pdb|3GLI|C Chain C, Crystal Structure Of The E. Coli Clamp Loader Bound To
           Primer-Template Dna And Psi Peptide
 gi|238537932|pdb|3GLI|D Chain D, Crystal Structure Of The E. Coli Clamp Loader Bound To
           Primer-Template Dna And Psi Peptide
 gi|238537935|pdb|3GLI|G Chain G, Crystal Structure Of The E. Coli Clamp Loader Bound To
           Primer-Template Dna And Psi Peptide
 gi|238537936|pdb|3GLI|H Chain H, Crystal Structure Of The E. Coli Clamp Loader Bound To
           Primer-Template Dna And Psi Peptide
 gi|238537937|pdb|3GLI|I Chain I, Crystal Structure Of The E. Coli Clamp Loader Bound To
           Primer-Template Dna And Psi Peptide
          Length = 395

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 53/306 (17%), Positives = 107/306 (34%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 33  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 86

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 87  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 146

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++        + ATT    L   +  R  +   L   ++E +
Sbjct: 147 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 205

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +A    A   +A  + G+ R A  L     D A  +    ++ +   A
Sbjct: 206 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAIASGDGQVSTQAVSA 261

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L  D+       L  +  +    G   + +   +A      +A+   +   + +  
Sbjct: 262 MLGTLDDDQA------LSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIA 315

Query: 309 FIQRTP 314
            +Q +P
Sbjct: 316 MVQLSP 321


>gi|164659418|ref|XP_001730833.1| hypothetical protein MGL_1832 [Malassezia globosa CBS 7966]
 gi|159104731|gb|EDP43619.1| hypothetical protein MGL_1832 [Malassezia globosa CBS 7966]
          Length = 371

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 76/227 (33%), Gaps = 38/227 (16%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   +   RPR L +  G       L+     A        H+L  G PG+GKTT    +
Sbjct: 14  ELPWVEKYRPRYLRDVVGNSATVERLR-----AIEEHGNCPHLLLSGLPGIGKTTSVHCL 68

Query: 75  AR------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIHRLSII 120
           A             EL  +       V +K    A    +L      ++ +DE   ++  
Sbjct: 69  AHALLGDAYKEAVLELNASDDRGIDVVRSKIKAFAQKKVSLPPGRHKIIVLDEADSMTPG 128

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            ++ L   ME                +    +RF    A  +   +  P+Q R  I    
Sbjct: 129 AQQALRRTME----------------IYAPTTRF--CFACNQSNKIIEPIQSRCAILRFG 170

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
              + E L+ ++Q   +   +  +DE    +   + G  R A   L+
Sbjct: 171 RISDEELLRRLLQ-ICEAEHVKYSDEGLAAVVFTAEGDMRQAVNNLQ 216


>gi|186684248|ref|YP_001867444.1| DNA polymerase III subunits gamma and tau [Nostoc punctiforme PCC
           73102]
 gi|186466700|gb|ACC82501.1| DNA polymerase III, subunits gamma and tau [Nostoc punctiforme PCC
           73102]
          Length = 707

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 84/234 (35%), Gaps = 19/234 (8%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +      RP++  E  GQ    + L   I  +K         LF GP G GKT+ A+++A
Sbjct: 4   EPLHHKYRPKSFAELVGQEAIATTLTNAIGTSKIA----PAYLFTGPRGTGKTSSARILA 59

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAME 130
           + L                D+   +T     DV+ ID      +  +  ++E+  +  ++
Sbjct: 60  KSLNCLKSDRPTAEPCGVCDVCQGITKGYALDVIEIDAASNTGVDNIRELIEKAQFAPVQ 119

Query: 131 DFQLDLMVGEGPS--ARSVKINLS-------RFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
                 ++ E      ++    L            + ATT    +   +  R        
Sbjct: 120 CRYKVYVIDECHMLSTQAFNALLKTLEEPPRHVVFVLATTDPQRVLPTIISRCQ-RFDFR 178

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
             ++E +   +   A    + ++ EA   +A  S+G  R A  LL ++   A V
Sbjct: 179 RIQLEAMVKHLSAIASKENIHISPEAVTLVAQLSQGGLRDAESLLDQLGLLAGV 232


>gi|4506491|ref|NP_002907.1| replication factor C subunit 4 [Homo sapiens]
 gi|31881687|ref|NP_853551.1| replication factor C subunit 4 [Homo sapiens]
 gi|1703052|sp|P35249|RFC4_HUMAN RecName: Full=Replication factor C subunit 4; AltName:
           Full=Activator 1 37 kDa subunit; Short=A1 37 kDa
           subunit; AltName: Full=Activator 1 subunit 4; AltName:
           Full=Replication factor C 37 kDa subunit; Short=RF-C 37
           kDa subunit; Short=RFC37
 gi|1498256|gb|AAB09785.1| replication factor C, 37-kDa subunit [Homo sapiens]
 gi|16924323|gb|AAH17452.1| Replication factor C (activator 1) 4, 37kDa [Homo sapiens]
 gi|18645198|gb|AAH24022.1| Replication factor C (activator 1) 4, 37kDa [Homo sapiens]
 gi|22532479|gb|AAM97933.1| replication factor C (activator 1) 4 (37kD) [Homo sapiens]
 gi|30582813|gb|AAP35633.1| replication factor C (activator 1) 4, 37kDa [Homo sapiens]
 gi|49168606|emb|CAG38798.1| RFC4 [Homo sapiens]
 gi|60819475|gb|AAX36501.1| replication factor C 4 [synthetic construct]
 gi|61362396|gb|AAX42213.1| replication factor C [synthetic construct]
 gi|61362402|gb|AAX42214.1| replication factor C [synthetic construct]
 gi|61363130|gb|AAX42340.1| replication factor C 4 [synthetic construct]
 gi|119598575|gb|EAW78169.1| replication factor C (activator 1) 4, 37kDa, isoform CRA_a [Homo
           sapiens]
 gi|119598576|gb|EAW78170.1| replication factor C (activator 1) 4, 37kDa, isoform CRA_a [Homo
           sapiens]
 gi|123993605|gb|ABM84404.1| replication factor C (activator 1) 4, 37kDa [synthetic construct]
 gi|123993735|gb|ABM84469.1| replication factor C (activator 1) 4, 37kDa [synthetic construct]
 gi|123994261|gb|ABM84732.1| replication factor C (activator 1) 4, 37kDa [synthetic construct]
 gi|123999624|gb|ABM87354.1| replication factor C (activator 1) 4, 37kDa [synthetic construct]
 gi|261860114|dbj|BAI46579.1| replication factor C (activator 1) 4, 37kDa [synthetic construct]
          Length = 363

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 77/234 (32%), Gaps = 45/234 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+ ++E   Q E  + LK  +E A      L ++LF GPPG GKT+     AR
Sbjct: 39  PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGAD-----LPNLLFYGPPGTGKTSTILAAAR 93

Query: 77  -------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD--------VLFIDEIH 115
                        EL  +       V  K  + A L  +    D        ++ +DE  
Sbjct: 94  ELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEAD 153

Query: 116 RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
            ++   +  L   ME                     +RF        V  +  PL  R  
Sbjct: 154 SMTSAAQAALRRTMEKESKT----------------TRF--CLICNYVSRIIEPLTSRCS 195

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
              R      +  +  +   AK   + ++DE    +   S G  R A   L+  
Sbjct: 196 -KFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSA 248


>gi|323191136|gb|EFZ76400.1| DNA polymerase III, subunits gamma and tau [Escherichia coli
           RN587/1]
          Length = 643

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 53/306 (17%), Positives = 107/306 (34%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++        + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +A    A   +A  + G+ R A  L     D A  +    ++ +   A
Sbjct: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAIASGDGQVSTQAVSA 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L  D+       L  +  +    G   + +   +A      +A+   +   + +  
Sbjct: 240 MLGTLDDDQA------LSLVEAMVEANGERVMALINEAATRGIEWEALLVEMLGLLHRIA 293

Query: 309 FIQRTP 314
            +Q +P
Sbjct: 294 MVQLSP 299


>gi|302760953|ref|XP_002963899.1| hypothetical protein SELMODRAFT_142036 [Selaginella moellendorffii]
 gi|300169167|gb|EFJ35770.1| hypothetical protein SELMODRAFT_142036 [Selaginella moellendorffii]
          Length = 765

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 64/253 (25%), Positives = 100/253 (39%), Gaps = 22/253 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE-----ALDHVLFVGPPGLGKTTLAQVVARELGV 80
           T ++F GQ    + L+  ++  K   E         VL  GPPG GKT LA+ +A E G+
Sbjct: 219 TFDDFAGQDYIKAELQEVVKLLKESKEDPTVYVPKGVLLHGPPGTGKTLLARAIAGEAGL 278

Query: 81  NFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRL---SIIVEEILYPA 128
            F S  G            A+  DL +   N     ++FIDEI  +       +      
Sbjct: 279 PFFSVGGAEFVEMYAGVAAARVQDLFSRARNFAP-SIIFIDEIDAIGGKRGNYDVGGGGR 337

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
             +  L  M+ E    +S  +  SR  +I AT R+ +L   L    RF   + +      
Sbjct: 338 EREQGLIQMLTELDGFQSG-LTSSRVLVIGATNRLDMLDAALLRKGRFDKIMAVGLPSEA 396

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
               I++  AK       +E    +   ++ T R +G  L  + + A V  A    +E  
Sbjct: 397 GRLEILKVHAKNKPFKSEEEKLRLLKDITKLTNRFSGAELANILNEA-VILAIRHDKEFI 455

Query: 247 DAALLRLAIDKMG 259
           + A L  AI + G
Sbjct: 456 EKAELEEAISRQG 468


>gi|289626398|ref|ZP_06459352.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|330866322|gb|EGH01031.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 741

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 68/329 (20%), Positives = 98/329 (29%), Gaps = 67/329 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPR+  E  GQ      LK  I A    ++ L H  LF G  G+GKTT+A+++A+ L   
Sbjct: 11  RPRSFREMVGQAHV---LKALINA--LDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNCE 65

Query: 82  FRSTS------------------------GPVIAKAGDLAALLTNLE------DRDVLFI 111
              TS                             K  D   LL N++         V  I
Sbjct: 66  TGITSTPCGTCSVCKEIDEGRFVDLIEIDAASRTKVEDTRELLDNVQYAPSRGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         I ATT    L   + 
Sbjct: 126 DEVHMLSSHSFNALLKTLEE------------------PPPYVKFILATTDPQKLPATIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L     E +   +     +  +   D+A   +   + G+ R A  L  +   
Sbjct: 168 SRC-LQFSLKNMTPERVVEHLTHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAIA 226

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLD-------LRYLTMIARNFGGGPVGIET 284
           F E              A+L        FD L           L  +      GP     
Sbjct: 227 FGEGK-----VMAADVRAMLGTLDHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGV 281

Query: 285 ISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
           +S  L+           P  +  G   R 
Sbjct: 282 LSEILNVLHRVAIAQALPEGVDNGHGDRD 310


>gi|194468110|ref|ZP_03074096.1| DNA polymerase III, subunits gamma and tau [Lactobacillus reuteri
           100-23]
 gi|194452963|gb|EDX41861.1| DNA polymerase III, subunits gamma and tau [Lactobacillus reuteri
           100-23]
          Length = 611

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 84/227 (37%), Gaps = 23/227 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+  ++  GQ      LK  I         + H  LF GP G GKT+ A++ A+ +  +
Sbjct: 11  RPQRFDDLVGQQIVTRTLKNAI-----ITHQISHAYLFAGPRGTGKTSAAKIFAKAVNCH 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDL 136
                 P      ++   +TN +  DV+ ID      +  +  I ++  Y   +      
Sbjct: 66  HSKDGEPCNEC--EICKAITNGQLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQADYKVY 123

Query: 137 MVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ++ E             ++++   +    I ATT    +   +  R            ED
Sbjct: 124 IIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPLTIISRVQ-RFDFRRISAED 182

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
               ++   +   +   ++A   IA  + G  R A  +L +V  F++
Sbjct: 183 AFDRMKYILEQKEVTYDEKALWVIANAAEGGMRDALSILDQVLSFSD 229


>gi|259415625|ref|ZP_05739546.1| DNA polymerase III subunits gamma and tau [Silicibacter sp.
           TrichCH4B]
 gi|259348855|gb|EEW60617.1| DNA polymerase III subunits gamma and tau [Silicibacter sp.
           TrichCH4B]
          Length = 625

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 56/277 (20%), Positives = 95/277 (34%), Gaps = 27/277 (9%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           E   +    Q        RP T  +  GQ      LK    A +         +  G  G
Sbjct: 24  ETSSAPQSGQYQVLARKYRPETFADLVGQDAMVRTLKNAFAADRIAQA----FIMTGIRG 79

Query: 65  LGKTTLAQVVARELGVNFRSTS-GPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSI-- 119
            GKTT A+++A+ +         GP     G        +E R  DV+ +D   R  +  
Sbjct: 80  TGKTTTARIIAKGMNCIGEDGQGGPTTEPCGKCEHCTAIMEGRHVDVMEMDAASRTGVGD 139

Query: 120 ---IVEEILYPAMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLT 167
              I++ + Y A        ++ E             ++++   +    I ATT +  + 
Sbjct: 140 IREIIDSVAYRAASARYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVP 199

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             +  R      L   E E +  +++R A      + ++A   I   + G+ R A  LL 
Sbjct: 200 VTVLSRCQ-RFDLRRIEPEVMIDLLRRIATNETAEIAEDALALITRAAEGSARDATSLL- 257

Query: 228 RVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLD 264
              D A    A   T +   A L      ++  D +D
Sbjct: 258 ---DQAISHGAGETTADQVRAMLGLADRGRV-LDLMD 290


>gi|254786716|ref|YP_003074145.1| DNA polymerase III subunits gamma and tau [Teredinibacter turnerae
           T7901]
 gi|237683496|gb|ACR10760.1| DNA polymerase III subunits gamma and tau [Teredinibacter turnerae
           T7901]
          Length = 672

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 57/277 (20%), Positives = 94/277 (33%), Gaps = 31/277 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP    E  GQ      L+  I A       L H  LF G  G+GKTT+A+++A+ L  +
Sbjct: 11  RPANFREMVGQEHV---LRALINA--LDHNRLHHAYLFTGTRGVGKTTIARILAKCLNCD 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYP-----AMEDFQL 134
              TS P     G+  + +   E R  D++ +D   R  +     L              
Sbjct: 66  SGVTSTP----CGECTSCVEIAEGRFVDLIEVDAASRTKVEDTRELLDNVQYAPTRGRYK 121

Query: 135 DLMVGEGPS--ARSVKINLS-------RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             ++ E       S    L            + ATT    L   +  R  +   L     
Sbjct: 122 IYLIDEVHMLSNHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC-LQFNLKNMSP 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           E +   +Q   +   +   + A   +A  + G+ R A  L  +   F     A +    +
Sbjct: 181 ERIVGHLQNVLEKEAIPSDNAALWSLARAADGSMRDALSLTDQAIAFGSGKVADSDVAAM 240

Query: 246 ---ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGP 279
               D  L++  I+ +  +    R L  +A      P
Sbjct: 241 LGTIDHQLIQRLIEAL-IESDGARLLNAVAEFAEHAP 276


>gi|154248975|ref|YP_001409800.1| DNA polymerase III, subunits gamma and tau [Fervidobacterium
           nodosum Rt17-B1]
 gi|154152911|gb|ABS60143.1| DNA polymerase III, subunits gamma and tau [Fervidobacterium
           nodosum Rt17-B1]
          Length = 517

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 51/265 (19%), Positives = 86/265 (32%), Gaps = 57/265 (21%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +A     RP+   +  GQ       K  +  A    +     +F GP G GKTT A+++A
Sbjct: 2   EALYRKYRPKNFYDIVGQEHI----KKLLTNALKLQKINHAYIFAGPRGTGKTTTARILA 57

Query: 76  RELGVNFRST------------------------SGPVIAKAGDLAALLTN------LED 105
           + L                                        ++  +         +  
Sbjct: 58  KSLNCEKNQFGEPCNECTSCQAIDNGSHLDVIELDAASNRGIDEIRKIKEGVNFTPVMGK 117

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
             V  IDE+H L+      L   +E+    ++                   I ATT    
Sbjct: 118 YKVYIIDEVHMLTREAFNALLKTLEEPPQHIV------------------FILATTNPEK 159

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           +   +  R  +    N    E++ + ++   +  G  VT EA  +IA R+ G  R A   
Sbjct: 160 IPPTIMSRCHVLEFRNI-SEENIISKLKSVCEKEGFDVTYEALKKIAKRAEGGLRDALST 218

Query: 226 LRRVRDFAEVAHAKTITREIADAAL 250
           L +V  +        +T +I D AL
Sbjct: 219 LEQVIRYT----GGEVTEKIVDEAL 239


>gi|163846115|ref|YP_001634159.1| DNA polymerase III subunits gamma and tau [Chloroflexus aurantiacus
           J-10-fl]
 gi|163667404|gb|ABY33770.1| DNA polymerase III, subunits gamma and tau [Chloroflexus
           aurantiacus J-10-fl]
          Length = 609

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 82/226 (36%), Gaps = 20/226 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           R +T  E  GQ      L+  I   +         LF GP G+GKTT+A+++A+ +    
Sbjct: 22  RSQTFAELVGQEHVVQTLRNAIAEDRVGHAY----LFTGPRGVGKTTMARLLAKAVNCLN 77

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE------EILYPAMEDFQLDL 136
              +        ++ A +      DV+ +D     S+             PA    ++ +
Sbjct: 78  PDPTAR-PCGVCEMCAAIAEGRAVDVIEMDAASHTSVEDAREIIERVQFRPAEARMKVYI 136

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++        I ATT V  +   +  R         + +  +
Sbjct: 137 IDETHMLSTAAFNALLKTLEEPPDHALFILATTEVHKVPATILSRCQ-RFTFVRHSVSAM 195

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
              ++R A   G+ + D     IA  + G+ R A  +L ++  F E
Sbjct: 196 AAHLRRIAAAEGIVLADGVPEAIARAATGSMRDALGILEQLASFVE 241


>gi|332250710|ref|XP_003274495.1| PREDICTED: replication factor C subunit 5 isoform 2 [Nomascus
           leucogenys]
 gi|332250712|ref|XP_003274496.1| PREDICTED: replication factor C subunit 5 isoform 3 [Nomascus
           leucogenys]
          Length = 319

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 74/223 (33%), Gaps = 38/223 (17%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75
           +   RP+TL +     +  S ++ FI       + L H+L  GPPG GKT+     A   
Sbjct: 2   VEKYRPQTLNDLISHQDILSTIQKFIS-----EDRLPHLLLYGPPGTGKTSTILACAKQL 56

Query: 76  ---RELGVNFRSTSGPVIAKAGDLAA-LLTNLEDRDVL-------FIDEIHRLSIIVEEI 124
              +E G      +         +   +L+    R +         +DE   ++   +  
Sbjct: 57  YKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNA 116

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           L   +E F       E      +   LS+                LQ R     R     
Sbjct: 117 LRRVIEKF------TENTRFCLICNYLSKIIP------------ALQSRC-TRFRFGPLT 157

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
            E +   ++   +   + ++++    +   S G  R A  +L+
Sbjct: 158 PELMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNILQ 200


>gi|291165756|gb|EFE27804.1| DNA polymerase III subunit gamma/tau [Filifactor alocis ATCC 35896]
          Length = 533

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 56/272 (20%), Positives = 90/272 (33%), Gaps = 54/272 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A   + RP+T ++  GQ    S LK      +   + ++H  LF GP G GKT+ A+V+A
Sbjct: 4   ALYRVYRPKTFDDIVGQEHITSVLK-----NQVAEDTVNHAYLFCGPRGTGKTSTAKVLA 58

Query: 76  RELGV------------------NFRSTSGPVIAKAGDLAALLTNL------EDRDVLFI 111
           R +                    +             ++  +  N+          V  I
Sbjct: 59  RAVNCTGEIKPCYQCKSCEQSSLDIIEMDAASNNSVDNIRDIRDNIVFMPSVSRYKVYII 118

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                    S    I ATT    +   + 
Sbjct: 119 DEVHMLSQGAFNALLKTLEE------------------PPSHVIFILATTEPQKIPATVL 160

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R          +   L   +++     G     +A   I  +S G  R A  LL +V +
Sbjct: 161 SRCQ-RFDFKKIDDSILTQQLEKVLLQEGKEFEADAVQCIVQKSDGGMRDALSLLDKVMN 219

Query: 232 FA-----EVAHAKTITREIADAALLRLAIDKM 258
            +     EV  A    +E    A ++   DK 
Sbjct: 220 LSKLTKQEVIQALGEVQEETYLAFIQFMKDKN 251


>gi|194442832|ref|YP_002039727.1| DNA polymerase III subunits gamma and tau [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194401495|gb|ACF61717.1| DNA polymerase III, tau subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
          Length = 642

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 51/303 (16%), Positives = 106/303 (34%), Gaps = 31/303 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++   +    + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +A    A   ++  + G+ R A  L     D A  +    ++ +   A
Sbjct: 184 RHQLEHILNEEHIAHEPRALQLLSRAADGSLRDALSL----TDQAIASGDGQVSTQAVSA 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L  D+       L  +  +    G   + +   +A      +A+   +   + +  
Sbjct: 240 MLGTLDDDQA------LSLVEAVVDANGERVMSLINEAAARGIEWEALLVEMLSLLHRIA 293

Query: 309 FIQ 311
            +Q
Sbjct: 294 MVQ 296


>gi|119505876|ref|ZP_01627941.1| DNA polymerase III subunits gamma and tau [marine gamma
           proteobacterium HTCC2080]
 gi|119458304|gb|EAW39414.1| DNA polymerase III subunits gamma and tau [marine gamma
           proteobacterium HTCC2080]
          Length = 568

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 57/299 (19%), Positives = 103/299 (34%), Gaps = 44/299 (14%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPRT  E  GQ      L+  + A     + L H  LF G  G+GKTT+A+++A+ L   
Sbjct: 11  RPRTFHEMVGQQHV---LRALVNA--LDNDRLHHAYLFTGTRGVGKTTVARILAKCLNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILY------PAMEDFQ 133
               S P     G+  +     E R  D++ +D   R  +     L       P+   F+
Sbjct: 66  VGVGSEP----CGECGSCREIAEGRSVDLIEVDAASRTKVEDTRELLDNVQYAPSRARFK 121

Query: 134 LDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           + L+               ++++        + ATT    L   +  R  +   L     
Sbjct: 122 IYLIDEVHMLSNHSFNALLKTLEEPPPHAKFLLATTDPQKLPATILSRC-LQFNLKNMLP 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           E +   +++      +     A   +   + G+ R A  L     D A    +  +    
Sbjct: 181 EQVVEHLEKILAEEAVEFESPALTLLGRAAAGSMRDALSL----TDQAIAYGSGQLQEAD 236

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGI----ETISAGLSEPRDAIEDLI 300
               L  +            R L ++ R   G    I    ++I+    +    +E++I
Sbjct: 237 VRDMLGTVDRG---------RVLELMTRVAEGDAAKILACVDSIAEHAPDYASTLEEVI 286


>gi|61367093|gb|AAX42951.1| replication factor C 4 [synthetic construct]
          Length = 364

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 76/234 (32%), Gaps = 45/234 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+ ++E   Q E  + LK  +E A      L ++LF GPPG GKT+     AR
Sbjct: 39  PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGAD-----LPNLLFYGPPGTGKTSTILAAAR 93

Query: 77  -------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD--------VLFIDEIH 115
                        EL  +       V  K  + A L  +    D        ++ +DE  
Sbjct: 94  ELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEAD 153

Query: 116 RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
            ++   +  L   ME                     +RF        V  +  PL  R  
Sbjct: 154 SMTSAAQAALRRTMEKESKT----------------TRF--CLICNYVSRIIEPLTSRCS 195

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
                     +  +  +   AK   + ++DE    +   S G  R A   L+  
Sbjct: 196 -KFSFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSA 248


>gi|225575493|ref|ZP_03784103.1| hypothetical protein RUMHYD_03583 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037290|gb|EEG47536.1| hypothetical protein RUMHYD_03583 [Blautia hydrogenotrophica DSM
           10507]
          Length = 534

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 80/230 (34%), Gaps = 21/230 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP    +  GQ    + L   I+A +         LF G  G GKTT+A+++A+
Sbjct: 5   ALYRKFRPDNFSDVKGQEHIVTTLTNQIKADRIGHAY----LFCGTRGTGKTTVAKILAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +         P   +     A+        V+ ID      +  +  I EE+ Y   + 
Sbjct: 61  AVNCEHPVDGSP-CNECETCRAIQAGTSMN-VIEIDAASNNGVDNIREIREEVAYRPTQG 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++   S    I ATT    +   +  R         
Sbjct: 119 RYKVYIIDEVHMLSTGAFNALLKTLEEPPSYVIFILATTEAHKIPITILSRCQ-RYDFRR 177

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
             IE +   +Q       + V ++A   +A  + G+ R A  LL +   F
Sbjct: 178 ISIETISKRLQDLMDKEQIQVQEKAIRYVAKAADGSMRDALSLLDQCIAF 227


>gi|212224564|ref|YP_002307800.1| replication factor C large subunit [Thermococcus onnurineus NA1]
 gi|212009521|gb|ACJ16903.1| replication factor C, large subunit [Thermococcus onnurineus NA1]
          Length = 500

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 81/226 (35%), Gaps = 29/226 (12%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEA-LDHVLFVGPPGLGKTTLA 71
           S +   +   RPR L E   Q +A   ++ +IEA           +L  G PG GKTT  
Sbjct: 5   SSDVPWVEKYRPRRLSEIVNQNKALEQVRAWIEAWLHGNPPKKKALLLAGSPGTGKTTTI 64

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEI 124
             +ARE G      +         +   +          + R ++F+DE   +       
Sbjct: 65  YALAREYGFEVIELNASDERTYEKIERYVQAAYTMDILGKRRKLIFLDESDNIEPS---- 120

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
                           G    +  I+ +R  +I +      +   ++++  I       +
Sbjct: 121 ----------------GAREIAKLIDKARNPIIMSANHYWEVPREIRNKAQIVEYKRLSQ 164

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
            + +K ++ R  K  G+ V  E   EIA R+ G  R A   L+ V 
Sbjct: 165 RDIMKALI-RILKAEGVTVPKEILQEIAKRANGDLRAAINDLQTVV 209


>gi|297672721|ref|XP_002814437.1| PREDICTED: replication factor C subunit 4-like isoform 1 [Pongo
           abelii]
 gi|297672723|ref|XP_002814438.1| PREDICTED: replication factor C subunit 4-like isoform 2 [Pongo
           abelii]
          Length = 363

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 77/234 (32%), Gaps = 45/234 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+ ++E   Q E  + LK  +E A      L ++LF GPPG GKT+     AR
Sbjct: 39  PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGAD-----LPNLLFYGPPGTGKTSTILAAAR 93

Query: 77  -------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD--------VLFIDEIH 115
                        EL  +       V  K  + A L  +    D        ++ +DE  
Sbjct: 94  ELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEAD 153

Query: 116 RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
            ++   +  L   ME                     +RF        V  +  PL  R  
Sbjct: 154 SMTSAAQAALRRTMEKESKT----------------TRF--CLICNYVSRIIEPLTSRCS 195

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
              R      +  +  +   AK   + ++DE    +   S G  R A   L+  
Sbjct: 196 -KFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSA 248


>gi|238537915|pdb|3GLH|B Chain B, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
           Peptide
 gi|238537916|pdb|3GLH|C Chain C, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
           Peptide
 gi|238537917|pdb|3GLH|D Chain D, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
           Peptide
 gi|238537920|pdb|3GLH|G Chain G, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
           Peptide
 gi|238537921|pdb|3GLH|H Chain H, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
           Peptide
 gi|238537922|pdb|3GLH|I Chain I, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
           Peptide
 gi|238537925|pdb|3GLH|L Chain L, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
           Peptide
 gi|238537926|pdb|3GLH|M Chain M, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
           Peptide
 gi|238537927|pdb|3GLH|N Chain N, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
           Peptide
          Length = 376

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 53/306 (17%), Positives = 107/306 (34%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 14  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 67

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 68  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 127

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++        + ATT    L   +  R  +   L   ++E +
Sbjct: 128 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 186

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +A    A   +A  + G+ R A  L     D A  +    ++ +   A
Sbjct: 187 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAIASGDGQVSTQAVSA 242

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L  D+       L  +  +    G   + +   +A      +A+   +   + +  
Sbjct: 243 MLGTLDDDQA------LSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIA 296

Query: 309 FIQRTP 314
            +Q +P
Sbjct: 297 MVQLSP 302


>gi|169854167|ref|XP_001833760.1| replication factor C [Coprinopsis cinerea okayama7#130]
 gi|116505157|gb|EAU88052.1| replication factor C [Coprinopsis cinerea okayama7#130]
          Length = 380

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 42/247 (17%), Positives = 74/247 (29%), Gaps = 50/247 (20%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
                 +   RP+T+ E + Q    S L   + +A      L H+LF GPPG GKT+   
Sbjct: 26  PANQPWVEKYRPKTINEISAQEHTTSVLSRTLTSA-----NLPHMLFYGPPGTGKTSTIL 80

Query: 73  VVARE------LGVNFRSTSGPVIAKAGDLAALLTNLEDRD------------------- 107
            +ARE              +         +   + N   +                    
Sbjct: 81  ALARELFGPDNFRNRVLELNASDERGISIVRDKIKNFARQTPRAQQAVSSDGKTYPCPPY 140

Query: 108 -VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
            ++ +DE   ++   +  L   ME +                  ++RF        V  +
Sbjct: 141 KIIILDEADSMTQDAQGALRRIMETY----------------AKITRF--CLVCNYVTRI 182

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
             PL  R     R    + +     +   A+   + ++      +   S G  R A   L
Sbjct: 183 IEPLASRCS-KFRFTPLDPDSASARLSYIAQAENIDISKPVIDALISTSHGDLRRAITYL 241

Query: 227 RRVRDFA 233
           +     A
Sbjct: 242 QSAARLA 248


>gi|30584245|gb|AAP36371.1| Homo sapiens replication factor C (activator 1) 4, 37kDa [synthetic
           construct]
 gi|54697188|gb|AAV38966.1| replication factor C (activator 1) 4, 37kDa [synthetic construct]
 gi|60653953|gb|AAX29669.1| replication factor C 4 [synthetic construct]
 gi|60654181|gb|AAX29783.1| replication factor C 4 [synthetic construct]
 gi|60830868|gb|AAX36948.1| replication factor C 4 [synthetic construct]
 gi|61367088|gb|AAX42950.1| replication factor C 4 [synthetic construct]
          Length = 364

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 77/234 (32%), Gaps = 45/234 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+ ++E   Q E  + LK  +E A      L ++LF GPPG GKT+     AR
Sbjct: 39  PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGAD-----LPNLLFYGPPGTGKTSTILAAAR 93

Query: 77  -------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD--------VLFIDEIH 115
                        EL  +       V  K  + A L  +    D        ++ +DE  
Sbjct: 94  ELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEAD 153

Query: 116 RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
            ++   +  L   ME                     +RF        V  +  PL  R  
Sbjct: 154 SMTSAAQAALRRTMEKESKT----------------TRF--CLICNYVSRIIEPLTSRCS 195

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
              R      +  +  +   AK   + ++DE    +   S G  R A   L+  
Sbjct: 196 -KFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSA 248


>gi|116750215|ref|YP_846902.1| DNA polymerase III subunits gamma and tau [Syntrophobacter
           fumaroxidans MPOB]
 gi|116699279|gb|ABK18467.1| DNA polymerase III, subunits gamma and tau [Syntrophobacter
           fumaroxidans MPOB]
          Length = 602

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 84/228 (36%), Gaps = 25/228 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T EE  GQ      L+  I +++         LF G  G+GKT++A+++A+ L    
Sbjct: 11  RPQTFEEVVGQPHVTRTLQNAIRSSRIA----HSYLFTGARGVGKTSIARILAKALNCET 66

Query: 83  RSTSGP--VIAKAGDLAALLTNLEDRDVLFIDEIHR-----LSIIVEEILYPAMEDFQLD 135
             T  P  V +   ++          DVL ID         +  + E + Y   +     
Sbjct: 67  GVTPTPCNVCSNCTEIRQGNAV----DVLEIDGASNRGIDSVRELRETVRYRPAKSRYKV 122

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             ++++        I ATT    +   +  R             
Sbjct: 123 YIIDEVHMLTTEAFNALLKTLEEPPEHVVFIFATTEPHKIPATILSRCQ-RFDFRRIPSH 181

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
            L   ++  A    +A+++     IA  + G+ R A  LL ++  F+ 
Sbjct: 182 MLVDHLRHIAAQEDVALSEGVLYAIAREADGSMRDAQSLLEQMLSFSR 229


>gi|317503212|ref|ZP_07961272.1| AAA family ATPase [Prevotella salivae DSM 15606]
 gi|315665675|gb|EFV05282.1| AAA family ATPase [Prevotella salivae DSM 15606]
          Length = 322

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 81/231 (35%), Gaps = 48/231 (20%)

Query: 111 IDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           IDEIHR S   ++ L  A+E   + L+    E PS   ++  LSR  L         +  
Sbjct: 1   IDEIHRFSKSQQDSLLGAVERGVVTLIGATTENPSFEVIRPLLSRCQL--------YVLK 52

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT-GLAVTDEAACEIAMRSRGTPRIAGRLLR 227
           PL             + EDL  +V+R       L        E     R +   A +LL 
Sbjct: 53  PL-------------DKEDLLQLVKRAITTDVELKKKHITLQESGALLRFSGGDARKLLN 99

Query: 228 RVRDFAEVAHAKTITREIADAALLRL---AIDKMGFDQLDLRYLTMIARNFGGGPVGIET 284
            +    E    + +  +    ++L+    A DK G    D+                   
Sbjct: 100 ILDLVIEATGDEVVITDELVESILQSNPLAYDKDGEMHYDI------------------- 140

Query: 285 ISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
           ISA +   R +  D    ++ +       P+   R L+  A + +G+  P+
Sbjct: 141 ISAFIKSIRGSDPDAALYWLARMIEGGEDPQFIARRLVISASEDIGLANPN 191


>gi|218887359|ref|YP_002436680.1| DNA polymerase III subunits gamma/tau [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218758313|gb|ACL09212.1| DNA polymerase III, subunits gamma and tau [Desulfovibrio vulgaris
           str. 'Miyazaki F']
          Length = 688

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 82/224 (36%), Gaps = 21/224 (9%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +  RP+T  E  GQ    + L     AA+ R       LF G  G+GKTT+A+++A+ L 
Sbjct: 8   ARYRPQTFAEVAGQETVKAILSRA--AAEDRVA--PAYLFSGTRGVGKTTIARILAKALN 63

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHR-----LSIIVEEILYPAMEDFQL 134
              ++ +G           ++      DV+ ID            + E I Y  ME    
Sbjct: 64  CE-KAPTGEPCNTCEQCRKVVMG-NHVDVVEIDGASNRGIEDARRLREAIGYAPMEGRYK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             ++ E             ++++    R T + ATT        +  R          E 
Sbjct: 122 VFIIDEAHMLTREAFNALLKTLEEPPPRVTFVLATTEPHKFPVTIISRCQHFTFKRLPEN 181

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           E L+  +       G      A   IA R+ G+ R +  LL +V
Sbjct: 182 E-LEAHLTGVLTREGQDFDPAAVRLIARRAAGSVRDSMSLLGQV 224


>gi|134118754|ref|XP_771880.1| hypothetical protein CNBN0610 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50254484|gb|EAL17233.1| hypothetical protein CNBN0610 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 373

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 79/235 (33%), Gaps = 37/235 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP +L++     +  S ++ FIEA +     L H+L  GPPG GKT+    +AR
Sbjct: 55  PWVEKYRPVSLDDVVSHKDITSTIEKFIEAGR-----LPHLLLYGPPGTGKTSTVLALAR 109

Query: 77  -----ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLF--------IDEIHRLSIIVEE 123
                    +    +         +   + N     VLF        +DE   ++   + 
Sbjct: 110 RLYGPAYRKHILELNASDDRGIDVVREQIKNFAMTKVLFSKGFKLVILDEADMMTQAAQS 169

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
            L   +E                                V  +T  +Q R     R +  
Sbjct: 170 ALRRVIEQHT------------------KNVRFCILCNYVNKITPAIQSRC-TRFRFSPL 210

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
             ++++  V    +  G+ +TD+    +   SRG  R A  +L+      ++   
Sbjct: 211 PEKEIQVKVDEVVQKEGVNLTDDGRDALLKLSRGDMRRALNVLQACHAAYDIVDE 265


>gi|227529515|ref|ZP_03959564.1| DNA polymerase III, subunits gamma and tau [Lactobacillus vaginalis
           ATCC 49540]
 gi|227350600|gb|EEJ40891.1| DNA polymerase III, subunits gamma and tau [Lactobacillus vaginalis
           ATCC 49540]
          Length = 609

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 84/230 (36%), Gaps = 29/230 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+  ++  GQ      LK  I         + H  LF GP G GKT+ A++ A+ +  +
Sbjct: 11  RPQRFDDMVGQQVVTRTLKNAI-----ITHQISHAYLFAGPRGTGKTSAAKIFAKAVNCH 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDL 136
                 P      D    +TN +  DV+ ID      +  +  I ++  Y   +      
Sbjct: 66  HSQDGEPCNEC--DTCKAITNGQLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQADYKVY 123

Query: 137 MVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQD---RFGIPIRLNFYE 184
           ++ E             ++++   +    I ATT    +   +     RF          
Sbjct: 124 IIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPLTIISRVQRFDFRRISATDS 183

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
            E +K I+        +   ++A   IA  + G  R A  +L +V  F++
Sbjct: 184 FERMKYIL----DQKKVEYDEKALWVIANAAEGGMRDALSILDQVLSFSD 229


>gi|309805430|ref|ZP_07699477.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners
           LactinV 09V1-c]
 gi|308165248|gb|EFO67484.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners
           LactinV 09V1-c]
          Length = 583

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 49/265 (18%), Positives = 97/265 (36%), Gaps = 22/265 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPRT E   GQ   C  L+     +  R +     LF GP G GKT+ A++ A+ +    
Sbjct: 11  RPRTFEAVVGQSAICDTLR----NSIKRHKISHAFLFSGPRGTGKTSCAKIFAKAINCMD 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P    +  LAA    L   D++ ID      +  +  I +++ Y   + +    +
Sbjct: 67  SKDGEPCNQCSNCLAADKGIL--NDIIEIDAASNNGVDEIRAIRDKVKYAPTQGYYKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT +  +   +  R            + L
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRI-SNDQL 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              ++       +A  +++   IA  + G  R +  +L ++  + +       T  I   
Sbjct: 184 VARMKFILDQDKIAYDEKSLQVIAQVADGGMRDSLSILDQILSYDQAKINYKDTLAITGY 243

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIAR 273
           A  ++ I+ +  D L+ +    +  
Sbjct: 244 A-DQVKIEALFLDLLNRKTSQALEE 267


>gi|296111510|ref|YP_003621892.1| DNA-directed DNA polymerase III, gamma/tau subunit [Leuconostoc
           kimchii IMSNU 11154]
 gi|295833042|gb|ADG40923.1| DNA-directed DNA polymerase III, gamma/tau subunit [Leuconostoc
           kimchii IMSNU 11154]
          Length = 594

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 50/237 (21%), Positives = 80/237 (33%), Gaps = 40/237 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RPRT ++  GQ      LK  IE  +         LF GP G GKT+ A++ AR
Sbjct: 5   ALYRVYRPRTFDDMVGQDVITQTLKNAIETHQTGHAY----LFSGPRGTGKTSAAKIFAR 60

Query: 77  ELG-----------VNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSI 119
           E+             +         ++  D+  +L N+       +  V  IDE+H LS 
Sbjct: 61  EINGIAPETSDAQIPDIVEFDAASNSRVEDMRDILANVDYAPIESEYKVYIIDEVHMLSN 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
                L   +E+                    +    I ATT    +   +  R      
Sbjct: 121 SAFNALLKTLEE------------------PPANVKFILATTEPQKVPVTILSRTQRFEF 162

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
                +  ++  +        +   D+A   IA  + G  R A  +L +V  F    
Sbjct: 163 KRIDNL-VIQAQLADILHQQSIGYEDDALRIIANVAEGGMRDALSILDQVIAFGTDK 218


>gi|289571965|ref|ZP_06452192.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
           tuberculosis T17]
 gi|289545719|gb|EFD49367.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
           tuberculosis T17]
          Length = 409

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 48/237 (20%), Positives = 82/237 (34%), Gaps = 23/237 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP +  E  GQ    + L V ++A +         LF GP G GKT+ A+++AR
Sbjct: 2   ALYRKYRPASFAEVVGQEHVTAPLSVALDAGRINHAY----LFSGPRGCGKTSSARILAR 57

Query: 77  ELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAM 129
            L      T+ P  V      LA         DV+ +D      +     + +   Y  +
Sbjct: 58  SLNCAQGPTANPCGVCESCVSLAP--NAPGSIDVVELDAASHGGVDDTRELRDRAFYAPV 115

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +      +V E             + V+        I ATT    +   ++ R       
Sbjct: 116 QSRYRVFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSR-THHYPF 174

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                  ++ ++ R  +  G+ V D     +     G+PR    +L ++   A   H
Sbjct: 175 RLLPPRTMRALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTH 231


>gi|169627413|ref|YP_001701062.1| DNA polymerase III, subunit gamma/tau [Mycobacterium abscessus ATCC
           19977]
 gi|169239380|emb|CAM60408.1| DNA polymerase III, subunit gamma/tau [Mycobacterium abscessus]
          Length = 679

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 85/249 (34%), Gaps = 27/249 (10%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           R  L +       A     RP T  E  GQ      L   ++A +         LF GP 
Sbjct: 5   RNRLWAPVPLLSVALYRKYRPATFAEVVGQEHVTGPLTTALDAGRINHAY----LFSGPR 60

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR----DVLFIDEIHRLSI 119
           G GKT+ A+++AR L        GP     G   + +    +     DV+ +D      +
Sbjct: 61  GCGKTSSARILARSLNC----VQGPTSTPCGTCESCVALAPNGSGNVDVIELDAASHGGV 116

Query: 120 IVEEILY------PAMEDFQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGL 165
                L       PA   +++ ++         G     + V+        + ATT    
Sbjct: 117 DDTRELRDRAFYAPAQSRYRIFIIDEAHMVTTAGFNALLKIVEEPPEHLIFVFATTEPEK 176

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           +   ++ R            + ++T+V+       ++V D     +     G+PR    +
Sbjct: 177 VLPTIRSR-THHYPFRLLAPKTMRTLVEGICAQENVSVDDPVYPLVIRAGAGSPRDTLSV 235

Query: 226 LRRVRDFAE 234
           L ++   A+
Sbjct: 236 LDQLLAGAD 244


>gi|270307947|ref|YP_003330005.1| DNA polymerase III, gamma and tau subunits [Dehalococcoides sp. VS]
 gi|270153839|gb|ACZ61677.1| DNA polymerase III, gamma and tau subunits [Dehalococcoides sp. VS]
          Length = 562

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 51/292 (17%), Positives = 89/292 (30%), Gaps = 51/292 (17%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+TL +  GQ      LK  + + +         LF GP G GKT+  +++A+ +    
Sbjct: 14  RPQTLADLVGQEHVAHTLKNALSSGRIAQAY----LFCGPRGTGKTSTGRILAKAVNCTT 69

Query: 83  RS-------------------------TSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                                D+  L   ++      +  V  I
Sbjct: 70  NQGKGEPCNTCPMCLSITEGSSMDIIEIDAASNTGVDDIRELKEKVQYSPSLANYKVYII 129

Query: 112 DEIHRLSIIVEEILYPAMED--FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+H LS      L   +E+   ++  ++      + +   +SR                
Sbjct: 130 DEVHMLSNSASNALLKTLEEPPPRVIFILATTEIHKVLPTIMSRCQRFDFHRVSLSDMTR 189

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAK--------LTGLAVTDEAACEIAMRSRGTPRI 221
             D+      +N  E E LK I  R A         L     T   A     + +    I
Sbjct: 190 KLDKISKAEDINI-EPEALKLIA-RSAGGSFRDGENLLQQIATTYGAEISLSQVQAALGI 247

Query: 222 AGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIAR 273
           +G    R++  AE  +      +     L  +  D +   Q     L  + +
Sbjct: 248 SGD--ERIKTLAE--NILKKDIKNGLKTLNAVVADGLDLKQFRRELLDYLRQ 295


>gi|71003365|ref|XP_756363.1| hypothetical protein UM00216.1 [Ustilago maydis 521]
 gi|46095800|gb|EAK81033.1| hypothetical protein UM00216.1 [Ustilago maydis 521]
          Length = 384

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 51/255 (20%), Positives = 84/255 (32%), Gaps = 47/255 (18%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           L++  +     +   RP+T++E   Q    + LK  +      +  L H+LF GPPG GK
Sbjct: 21  LAKEKAANRPWVEKYRPKTIDEVAAQEHTVAVLKKTL-----LSNNLPHMLFYGPPGTGK 75

Query: 68  TTLAQVVAR-------------ELGVNFRSTSGPVIAKAGDLAAL-LTNLEDR------D 107
           T+    +AR             EL  +       V  K  + A L +TN ++        
Sbjct: 76  TSTILALARQLFGPELMKTRVLELNASDERGITVVREKIKNFAKLAVTNPKEGFPCPPFK 135

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA-TTRVGLL 166
           ++ +DE   ++   +  L   ME +                   SR T        V  +
Sbjct: 136 IIILDEADSMTQDAQSALRRIMEQY-------------------SRITRFCLVCNYVTRI 176

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEA-ACEIAMRSRGTPRIAGRL 225
             PL  R     R    +    K  ++  A    +A  D      +   S G  R A   
Sbjct: 177 IEPLASRCS-KFRFRSLDTSSTKARLEMIASAESVAFRDSGVLDTLISTSDGDLRRAITY 235

Query: 226 LRRVRDFAEVAHAKT 240
           L+       +     
Sbjct: 236 LQSASRLHSLTGEDK 250


>gi|257469136|ref|ZP_05633230.1| DNA polymerase III subunits gamma and tau [Fusobacterium ulcerans
           ATCC 49185]
 gi|317063383|ref|ZP_07927868.1| DNA polymerase III gamma and tau [Fusobacterium ulcerans ATCC
           49185]
 gi|313689059|gb|EFS25894.1| DNA polymerase III gamma and tau [Fusobacterium ulcerans ATCC
           49185]
          Length = 484

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 40/262 (15%), Positives = 77/262 (29%), Gaps = 41/262 (15%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
              RP+  EE  GQ E    LK    A+    +     LF GP G+GKTT+A+++A+ + 
Sbjct: 7   RKYRPKNFEEIAGQKEIVKTLK----ASLRNGKTSHAYLFTGPRGVGKTTIARLIAKGVN 62

Query: 80  V-------------------------NFRSTSGPVIAKAGDLAALLTNL------EDRDV 108
                                     +             ++  L   +        + +
Sbjct: 63  CLENGITDEPCNKCENCLSINDGSFMDMIEIDAASNRGIDEIRQLKEKINYQPSKGRKKI 122

Query: 109 LFIDEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
             IDE+H L+      L   +E+    +  ++    + + +   +SR       T     
Sbjct: 123 YIIDEVHMLTKEAFNALLKTLEEPPEHVIFILATTEADKILPTIISRCQRYDFKTLSPAE 182

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
                        ++  + + L  I +             +  E  M +     I     
Sbjct: 183 MKEKLGEISENEGVSVPD-DVLDLIYENSGGSMR---DATSILERLMITCLDEEITLEKC 238

Query: 227 RRVRDFAEVAHAKTITREIADA 248
            +V     V   K     + + 
Sbjct: 239 EKVLGVTPVKKMKDFLDNVTEK 260


>gi|313900814|ref|ZP_07834304.1| DNA polymerase III, subunit gamma and tau [Clostridium sp. HGF2]
 gi|312954234|gb|EFR35912.1| DNA polymerase III, subunit gamma and tau [Clostridium sp. HGF2]
          Length = 602

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 88/235 (37%), Gaps = 28/235 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP + +E  GQ      L+  +E  K         LF GP G GKT++A++ A+
Sbjct: 5   ALYRTYRPNSFDEVAGQKHVVQTLQHAVEQHKIAHAY----LFCGPRGTGKTSIAKIFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +     +    +  +  +  A+       D++ ID      +  +  ++E++ Y  ++ 
Sbjct: 61  TINCENPNHKPCL--ECDNCRAVQDGSHP-DIIEIDAASNNGVEEVRTLIEKVKYAPLKG 117

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQD---RFGIPIR 179
                ++ E             ++++        I ATT    +   +     RF     
Sbjct: 118 KYKIYIIDEVHMMSTGAFNALLKTIEEPPEHVIFILATTEPHKVLPTIISRCQRFDFTKV 177

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
                ++ + TI++R      +   +E    IA  + G  R A  +L +   +A+
Sbjct: 178 PREEIVQRIHTILER----EQITCEEEVIRIIAQLADGGLRDALSILDQCIAYAQ 228


>gi|227545161|ref|ZP_03975210.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A]
 gi|300909166|ref|ZP_07126627.1| DNA polymerase III, gamma/tau subunit DnaX [Lactobacillus reuteri
           SD2112]
 gi|227184893|gb|EEI64964.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A]
 gi|300893031|gb|EFK86390.1| DNA polymerase III, gamma/tau subunit DnaX [Lactobacillus reuteri
           SD2112]
          Length = 611

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 83/227 (36%), Gaps = 23/227 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+  ++  GQ      LK  I         + H  LF GP G GKT+ A++ A+ +  +
Sbjct: 11  RPQRFDDLVGQQIVTRTLKNAI-----ITHQISHAYLFAGPRGTGKTSAAKIFAKAVNCH 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDL 136
                 P      ++   +TN +  DV+ ID      +  +  I ++  Y   +      
Sbjct: 66  HSKDGEPCNEC--EICKAITNGQLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQADYKVY 123

Query: 137 MVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ++ E             ++++   +    I ATT    +   +  R            ED
Sbjct: 124 IIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPLTIISRVQ-RFDFRRISAED 182

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
               ++       +   ++A   IA  + G  R A  +L +V  F++
Sbjct: 183 AFNRMKYILDQKEVTYDEKALWVIANAAEGGMRDALSILDQVLSFSD 229


>gi|112944293|gb|ABI26342.1| DNA polymerase III, subunits gamma and tau [Lactobacillus reuteri]
          Length = 611

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 83/227 (36%), Gaps = 23/227 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+  ++  GQ      LK  I         + H  LF GP G GKT+ A++ A+ +  +
Sbjct: 11  RPQRFDDLVGQQIVTRTLKNAI-----ITHQISHAYLFAGPRGTGKTSAAKIFAKAVNCH 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDL 136
                 P      ++   +TN +  DV+ ID      +  +  I ++  Y   +      
Sbjct: 66  HSKDGEPCNEC--EICKAITNGQLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQADYKVY 123

Query: 137 MVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ++ E             ++++   +    I ATT    +   +  R            ED
Sbjct: 124 IIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPLTIISRVQ-RFDFRRISAED 182

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
               ++       +   ++A   IA  + G  R A  +L +V  F++
Sbjct: 183 AFNRMKYILDQKEVTYDEKALWVIANAAEGGMRDALSILDQVLSFSD 229


>gi|222523851|ref|YP_002568321.1| DNA polymerase III subunits gamma and tau [Chloroflexus sp.
           Y-400-fl]
 gi|222447730|gb|ACM51996.1| DNA polymerase III, subunits gamma and tau [Chloroflexus sp.
           Y-400-fl]
          Length = 598

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 82/226 (36%), Gaps = 20/226 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           R +T  E  GQ      L+  I   +         LF GP G+GKTT+A+++A+ +    
Sbjct: 11  RSQTFAELVGQEHVVQTLRNAIAEDRVGHAY----LFTGPRGVGKTTMARLLAKAVNCLN 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE------EILYPAMEDFQLDL 136
              +        ++ A +      DV+ +D     S+             PA    ++ +
Sbjct: 67  PDPTAR-PCGVCEMCAAIAEGRAVDVIEMDAASHTSVEDAREIIERVQFRPAEARMKVYI 125

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++        I ATT V  +   +  R         + +  +
Sbjct: 126 IDETHMLSTAAFNALLKTLEEPPDHALFILATTEVHKVPATILSRCQ-RFTFVRHSVSAM 184

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
              ++R A   G+ + D     IA  + G+ R A  +L ++  F E
Sbjct: 185 AAHLRRIAAAEGIVLADGVPEAIARAATGSMRDALGILEQLASFVE 230


>gi|302063638|ref|ZP_07255179.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv.
           tomato K40]
 gi|302133891|ref|ZP_07259881.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv.
           tomato NCPPB 1108]
          Length = 740

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 68/329 (20%), Positives = 98/329 (29%), Gaps = 67/329 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPR+  E  GQ      LK  I A    ++ L H  LF G  G+GKTT+A+++A+ L   
Sbjct: 11  RPRSFREMVGQAHV---LKALINA--LDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNCE 65

Query: 82  FRSTS------------------------GPVIAKAGDLAALLTNLE------DRDVLFI 111
              TS                             K  D   LL N++         V  I
Sbjct: 66  TGITSTPCGTCSVCKEIDEGRFVDLIEIDAASRTKVEDTRELLDNVQYAPSRGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         I ATT    L   + 
Sbjct: 126 DEVHMLSSHSFNALLKTLEE------------------PPPYVKFILATTDPQKLPATIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L     E +   +     +  +   D+A   +   + G+ R A  L  +   
Sbjct: 168 SRC-LQFSLKNMTPERVVEHLTHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAIA 226

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLD-------LRYLTMIARNFGGGPVGIET 284
           F E              A+L        FD L           L  +      GP     
Sbjct: 227 FGEGK-----VMAADVRAMLGTLDHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGV 281

Query: 285 ISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
           +S  L+           P  +  G   R 
Sbjct: 282 LSEILNVLHRVAIAQALPEGVDNGHGDRD 310


>gi|302813234|ref|XP_002988303.1| hypothetical protein SELMODRAFT_426967 [Selaginella moellendorffii]
 gi|300144035|gb|EFJ10722.1| hypothetical protein SELMODRAFT_426967 [Selaginella moellendorffii]
          Length = 829

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 64/253 (25%), Positives = 100/253 (39%), Gaps = 22/253 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE-----ALDHVLFVGPPGLGKTTLAQVVARELGV 80
           T ++F GQ    + L+  ++  K   E         VL  GPPG GKT LA+ +A E G+
Sbjct: 289 TFDDFAGQDYIKAELQEVVKLLKESKEDPTVYVPKGVLLHGPPGTGKTLLARAIAGEAGL 348

Query: 81  NFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRL---SIIVEEILYPA 128
            F S  G            A+  DL +   N     ++FIDEI  +       +      
Sbjct: 349 PFFSVGGAEFVEMYAGVAAARVQDLFSRARNFAP-SIIFIDEIDAIGGKRGNYDVGGGGR 407

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
             +  L  M+ E    +S  +  SR  +I AT R+ +L   L    RF   + +      
Sbjct: 408 EREQGLIQMLTELDGFQSG-LTSSRVLVIGATNRLDMLDAALLRKGRFDKIMAVGLPSEA 466

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
               I++  AK       +E    +   ++ T R +G  L  + + A V  A    +E  
Sbjct: 467 GRLEILKVHAKNKPFKSEEEKLRLLKDITKLTNRFSGAELANILNEA-VILAIRHDKEFI 525

Query: 247 DAALLRLAIDKMG 259
           + A L  AI + G
Sbjct: 526 EKAELEEAISRQG 538


>gi|213968912|ref|ZP_03397052.1| DNA polymerase III, subunits gamma and tau [Pseudomonas syringae
           pv. tomato T1]
 gi|213926211|gb|EEB59766.1| DNA polymerase III, subunits gamma and tau [Pseudomonas syringae
           pv. tomato T1]
          Length = 744

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 68/329 (20%), Positives = 98/329 (29%), Gaps = 67/329 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPR+  E  GQ      LK  I A    ++ L H  LF G  G+GKTT+A+++A+ L   
Sbjct: 11  RPRSFREMVGQAHV---LKALINA--LDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNCE 65

Query: 82  FRSTS------------------------GPVIAKAGDLAALLTNLE------DRDVLFI 111
              TS                             K  D   LL N++         V  I
Sbjct: 66  TGITSTPCGTCSVCKEIDEGRFVDLIEIDAASRTKVEDTRELLDNVQYAPSRGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         I ATT    L   + 
Sbjct: 126 DEVHMLSSHSFNALLKTLEE------------------PPPYVKFILATTDPQKLPATIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L     E +   +     +  +   D+A   +   + G+ R A  L  +   
Sbjct: 168 SRC-LQFSLKNMTPERVVEHLTHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAIA 226

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLD-------LRYLTMIARNFGGGPVGIET 284
           F E              A+L        FD L           L  +      GP     
Sbjct: 227 FGEGK-----VMAADVRAMLGTLDHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGV 281

Query: 285 ISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
           +S  L+           P  +  G   R 
Sbjct: 282 LSEILNVLHRVAIAQALPEGVDNGHGDRD 310


>gi|56418552|ref|YP_145870.1| DNA polymerase III subunits gamma and tau [Geobacillus kaustophilus
           HTA426]
 gi|56378394|dbj|BAD74302.1| DNA-directed DNA polymerase III gamma and tau subunits [Geobacillus
           kaustophilus HTA426]
          Length = 559

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 61/313 (19%), Positives = 110/313 (35%), Gaps = 36/313 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RP+   +  GQ      L    ++A  + +     LF GP G GKT+ A++ A+
Sbjct: 5   ALYRVFRPQRFADMVGQEHVTKTL----QSALLQHKISHAYLFSGPRGTGKTSAAKIFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHR-----LSIIVEEILYPAM 129
            +         P      +  A L  TN    DVL ID         +  I E++ +   
Sbjct: 61  AVNCE----QAPAAEPCNECPACLGITNGTVPDVLEIDAASNNRVDEIRDIREKVKFAPT 116

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                  ++ E             ++++        I ATT    +   +  R       
Sbjct: 117 SARYKVYIIDEVHMLSIGAFNALLKTLEEPPKHVIFILATTEPHKIPTTIISRCQ-RFDF 175

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
               +  + + ++  A   G+  +DEA   IA  + G  R A  LL +   F++      
Sbjct: 176 RRIPLPAIVSRLKYVASAQGVEASDEALSAIARAADGGMRDALSLLDQAISFSDGKLRLD 235

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
               +  AA    A      + +  +    + +        +ET+ A   +P   +EDLI
Sbjct: 236 DVLAMTGAA--SFAALSSFIEAIHRKDTAAVLQQ-------LETMMAQGKDPHRLVEDLI 286

Query: 301 EPYMIQQGFIQRT 313
             Y  +   + +T
Sbjct: 287 LYY--RDLLLYKT 297


>gi|283784297|ref|YP_003364162.1| DNA polymerase III subunits gamma and tau [Citrobacter rodentium
           ICC168]
 gi|282947751|emb|CBG87307.1| DNA polymerase III subunits gamma and tau [Citrobacter rodentium
           ICC168]
          Length = 643

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 52/306 (16%), Positives = 108/306 (35%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP++  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQSFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++   +    + ATT    L   +  R  +   L   +++ +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVDQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +A    A   ++  + G+ R A  L     D A  +    IT +   A
Sbjct: 184 RHQLEHILDEEHIAHEPRALQLLSRAADGSLRDALSL----TDQAIASGDGQITTQAVSA 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L  D+       L  +  +    G   + +   +A      +A+   +   + +  
Sbjct: 240 MLGTLDDDQA------LSLVEAVVAADGERVMSLVNEAAARGIEWEALLVEMLGLLHRIA 293

Query: 309 FIQRTP 314
            +Q +P
Sbjct: 294 LVQLSP 299


>gi|195434144|ref|XP_002065063.1| GK15259 [Drosophila willistoni]
 gi|194161148|gb|EDW76049.1| GK15259 [Drosophila willistoni]
          Length = 331

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 45/239 (18%), Positives = 76/239 (31%), Gaps = 39/239 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP  LE+     E  S +  FI       + L H+LF GPPG GKT+     AR
Sbjct: 11  PWVEKYRPNNLEDLISHEEIVSTINRFI-----GQKQLPHLLFYGPPGTGKTSTILACAR 65

Query: 77  ------ELGVNFRSTSGPVIAKAGDLA-ALLTNLEDRDVLF-------IDEIHRLSIIVE 122
                 +        +       G +   +L     R +         +DE   ++   +
Sbjct: 66  QLYTPAQFKSMVLELNASDDRGIGIVRGQILNFASTRTIFCGTFKLIILDEADAMTNDAQ 125

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             L   +E +       E      +   LS+                LQ R     R   
Sbjct: 126 NALRRIIEKY------TENVRFCVICNYLSKIIP------------ALQSRC-TRFRFAP 166

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR-RVRDFAEVAHAKT 240
              E +   + +  +   + +TD+    +   ++G  R    +L+  V  F EV     
Sbjct: 167 LSPEQMLPRLDKIVEAEAVTITDDGKKALLTLAKGDMRKVLNVLQSTVMAFNEVNENNV 225


>gi|61679671|pdb|1XXI|B Chain B, Adp Bound E. Coli Clamp Loader Complex
 gi|61679672|pdb|1XXI|C Chain C, Adp Bound E. Coli Clamp Loader Complex
 gi|61679673|pdb|1XXI|D Chain D, Adp Bound E. Coli Clamp Loader Complex
 gi|61679676|pdb|1XXI|G Chain G, Adp Bound E. Coli Clamp Loader Complex
 gi|61679677|pdb|1XXI|H Chain H, Adp Bound E. Coli Clamp Loader Complex
 gi|61679678|pdb|1XXI|I Chain I, Adp Bound E. Coli Clamp Loader Complex
          Length = 368

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 53/306 (17%), Positives = 107/306 (34%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++        + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +A    A   +A  + G+ R A  L     D A  +    ++ +   A
Sbjct: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAIASGDGQVSTQAVSA 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L  D+       L  +  +    G   + +   +A      +A+   +   + +  
Sbjct: 240 MLGTLDDDQA------LSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIA 293

Query: 309 FIQRTP 314
            +Q +P
Sbjct: 294 MVQLSP 299


>gi|193702269|ref|XP_001948634.1| PREDICTED: replication factor C subunit 4-like [Acyrthosiphon
           pisum]
          Length = 359

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 56/262 (21%), Positives = 88/262 (33%), Gaps = 48/262 (18%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RPRT++E + Q E  + LK  +E    +   + H+LF GPPG GKT+     AR
Sbjct: 36  PWVEKYRPRTVDEVSEQSEIVAVLKQCLE----QGADMPHLLFYGPPGTGKTSTIIAAAR 91

Query: 77  ELGVNFRSTSG-----------PVIAKAGDLAALLTNLEDRD---------VLFIDEIHR 116
           +L  +                  VI       A LT  + R          ++ +DE   
Sbjct: 92  QLFGDMYKNRMLELNASDDRGIQVIRDKVKTFAQLTASDRRPDGKPCPPFKIVVLDEADS 151

Query: 117 LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
           ++   +  L   +E                     +RF        V  + +PL  R   
Sbjct: 152 MTAPAQAALRRTIERETKT----------------TRF--CLICNYVSCIIDPLTSRCS- 192

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR-RVRDFAEV 235
             R      E + T ++   K  G+         +   S G  R A   L+   R   EV
Sbjct: 193 KFRFKPLSHEIMLTRLEHICKEEGVKCAPRVLARLVDASGGDMRRAITSLQSTARLKGEV 252

Query: 236 AHAKTITRE----IADAALLRL 253
              +    E    + D  L R+
Sbjct: 253 GIEEVDVLEVVGTVPDIWLDRM 274


>gi|15988192|pdb|1JR3|A Chain A, Crystal Structure Of The Processivity Clamp Loader Gamma
           Complex Of E. Coli Dna Polymerase Iii
 gi|15988193|pdb|1JR3|B Chain B, Crystal Structure Of The Processivity Clamp Loader Gamma
           Complex Of E. Coli Dna Polymerase Iii
 gi|15988194|pdb|1JR3|C Chain C, Crystal Structure Of The Processivity Clamp Loader Gamma
           Complex Of E. Coli Dna Polymerase Iii
 gi|61679661|pdb|1XXH|B Chain B, Atpgs Bound E. Coli Clamp Loader Complex
 gi|61679662|pdb|1XXH|C Chain C, Atpgs Bound E. Coli Clamp Loader Complex
 gi|61679663|pdb|1XXH|D Chain D, Atpgs Bound E. Coli Clamp Loader Complex
 gi|61679666|pdb|1XXH|G Chain G, Atpgs Bound E. Coli Clamp Loader Complex
 gi|61679667|pdb|1XXH|H Chain H, Atpgs Bound E. Coli Clamp Loader Complex
 gi|61679668|pdb|1XXH|I Chain I, Atpgs Bound E. Coli Clamp Loader Complex
          Length = 373

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 53/306 (17%), Positives = 107/306 (34%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++        + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +A    A   +A  + G+ R A  L     D A  +    ++ +   A
Sbjct: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAIASGDGQVSTQAVSA 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L  D+       L  +  +    G   + +   +A      +A+   +   + +  
Sbjct: 240 MLGTLDDDQA------LSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIA 293

Query: 309 FIQRTP 314
            +Q +P
Sbjct: 294 MVQLSP 299


>gi|323160419|gb|EFZ46367.1| DNA polymerase III, subunits gamma and tau [Escherichia coli
           E128010]
          Length = 372

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 53/306 (17%), Positives = 107/306 (34%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++        + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +A    A   +A  + G+ R A  L     D A  +    ++ +   A
Sbjct: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAIASGDGQVSTQAVSA 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L  D+       L  +  +    G   + +   +A      +A+   +   + +  
Sbjct: 240 MLGTLDDDQA------LSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIA 293

Query: 309 FIQRTP 314
            +Q +P
Sbjct: 294 MVQLSP 299


>gi|17232424|ref|NP_488972.1| DNA polymerase III gamma and tau subunits [Nostoc sp. PCC 7120]
 gi|17134070|dbj|BAB76631.1| DNA polymerase III gamma and tau subunits [Nostoc sp. PCC 7120]
          Length = 655

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 79/222 (35%), Gaps = 19/222 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+   E  GQ    + L   I  AK         LF GP G GKT+ A+++A+ L    
Sbjct: 11  RPKNFAELVGQEAIATTLTNAIRTAKIA----PAYLFTGPRGTGKTSSARILAKSLNCLN 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                       D+   +T     DV+ ID      +  +  ++E+  +  ++      +
Sbjct: 67  SDKPTAEPCGVCDVCQGITKGYSLDVIEIDAASNTGVDNIRELIEKAQFAPVQCRYKVYV 126

Query: 138 VGEGPSARSVKIN---------LSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E     S   N               + ATT    +   +  R          ++E +
Sbjct: 127 IDECHMLSSAAFNALLKTLEEPPRHVVFVLATTDPQRVLPTIISRCQ-RFDFRRIQLEAM 185

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
              +   A    + ++ EA   +A  S+G  R A  LL ++ 
Sbjct: 186 VKHLSAIASKENINISLEAVTLVAQLSQGGLRDAESLLDQLA 227


>gi|301385366|ref|ZP_07233784.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv.
           tomato Max13]
          Length = 740

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 68/329 (20%), Positives = 98/329 (29%), Gaps = 67/329 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPR+  E  GQ      LK  I A    ++ L H  LF G  G+GKTT+A+++A+ L   
Sbjct: 11  RPRSFREMVGQAHV---LKALINA--LDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNCE 65

Query: 82  FRSTS------------------------GPVIAKAGDLAALLTNLE------DRDVLFI 111
              TS                             K  D   LL N++         V  I
Sbjct: 66  TGITSTPCGTCSVCKEIDEGRFVDLIEIDAASRTKVEDTRELLDNVQYAPSRGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         I ATT    L   + 
Sbjct: 126 DEVHMLSSHSFNALLKTLEE------------------PPPYVKFILATTDPQKLPATIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L     E +   +     +  +   D+A   +   + G+ R A  L  +   
Sbjct: 168 SRC-LQFSLKNMTPERVVEHLTHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAIA 226

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLD-------LRYLTMIARNFGGGPVGIET 284
           F E              A+L        FD L           L  +      GP     
Sbjct: 227 FGEGK-----VMAADVRAMLGTLDHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGV 281

Query: 285 ISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
           +S  L+           P  +  G   R 
Sbjct: 282 LSEILNVLHRVAIAQALPEGVDNGHGDRD 310


>gi|221116027|ref|XP_002154784.1| PREDICTED: similar to predicted protein, partial [Hydra
           magnipapillata]
          Length = 322

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 42/241 (17%), Positives = 77/241 (31%), Gaps = 38/241 (15%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M   E +   N    D  +   RP  L++     +    ++ FI   K     L H+LF 
Sbjct: 106 MEFAERVNVTNFHASDGWVEKYRPACLDDLISHKDIIDTIQKFISEGK-----LPHLLFY 160

Query: 61  GPPGLGKTTLAQVVA------RELGVNFRSTSGPVIAKAGDLAA-LLTNLEDRDVL---- 109
           GPPG GKT+    VA      +E        +       G +   +L     R V     
Sbjct: 161 GPPGTGKTSTILAVAKQLYSPKEFHSMVLELNASDDRGIGIVREQILGFASTRTVFKSKF 220

Query: 110 ---FIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
               +DE   ++   +  L   ME +       E                      +  +
Sbjct: 221 KLVILDEADAMTNDAQNALRRIMEKY------TENTRF------------CLICNYLTGI 262

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
              +Q R     R    + + +   ++   +   + VT++    +    +G  R +  +L
Sbjct: 263 IPAIQSRC-TRFRFGPLDADQVSLRLKHVIQEENVTVTEDGMKSLIRLGKGDMRRSLNIL 321

Query: 227 R 227
           +
Sbjct: 322 Q 322


>gi|261414697|ref|YP_003248380.1| DNA polymerase III, subunits gamma and tau [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|261371153|gb|ACX73898.1| DNA polymerase III, subunits gamma and tau [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|302326946|gb|ADL26147.1| putative DNA polymerase III, gamma and tau subunit [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 575

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 85/227 (37%), Gaps = 27/227 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH-VLFVGPPGLGKTTLAQVVARELGVN 81
           RP++  +  GQ      L+  I+  +     L H  LF G  G+GKTT A+++AR L   
Sbjct: 11  RPQSFSDMVGQEHIAKTLENAIQGGR-----LHHAFLFTGTRGVGKTTSARILARTLNCK 65

Query: 82  FRSTSGP--VIAKAGDLAALLTNLEDRDVLFIDEIHRLSI-----IVEEILYPAMEDFQL 134
                 P        D+A         DV  ID     S+     ++E + YP +     
Sbjct: 66  GSDPLHPCGECDSCKDIAG----GNPMDVYEIDAASNTSVDNIRDVIERVQYPPVIGKYK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             ++ E             ++++   +    I ATT V  +   +  R           +
Sbjct: 122 IFIIDEVHMLSTGAFNALLKTLEEPPAHVIFIFATTEVNKVPQTILSRVQ-RFDFKRLTV 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           + +++ ++   +  G+  TDEA    A ++ G+ R       +   F
Sbjct: 181 DQIRSRLRYICEQEGIKATDEALDIFAEKADGSMRDGLTYFDQAYAF 227


>gi|325111245|ref|YP_004272313.1| DNA polymerase III subunits gamma and tau [Planctomyces
           brasiliensis DSM 5305]
 gi|324971513|gb|ADY62291.1| DNA polymerase III, subunits gamma and tau [Planctomyces
           brasiliensis DSM 5305]
          Length = 593

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 81/228 (35%), Gaps = 21/228 (9%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+T +   GQ      L+  I A +         LF G  G+GKT++A+++A+ L
Sbjct: 12  ARRYRPQTFDAVVGQQHVAQALRNAIRAERVAHAY----LFTGARGVGKTSMARILAKAL 67

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP-----AMEDFQ 133
                    P      +L   ++   D DV+ ID      I     L       +M    
Sbjct: 68  NCTNSQDGNPCNQC--ELCQAISTGSDVDVMEIDGASNRGIDDIRSLRANVGIRSMRTRV 125

Query: 134 LDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
              ++ E             ++++        +  TT    + + +  R       +  E
Sbjct: 126 KMYIIDEVHMLTKEAFNALLKTLEEPPPNVKFVFCTTEPHKVPDTILSRCQ-RFDFSSIE 184

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
            + +   +   A   G+ V  EA   +A R+ G+ R +  L  ++  F
Sbjct: 185 TQKISERLAEIAASEGIEVAPEAVDLVARRAGGSMRDSQSLFDQLLAF 232


>gi|126658850|ref|ZP_01729993.1| DNA-directed DNA polymerase [Cyanothece sp. CCY0110]
 gi|126619800|gb|EAZ90526.1| DNA-directed DNA polymerase [Cyanothece sp. CCY0110]
          Length = 692

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 83/230 (36%), Gaps = 19/230 (8%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L+++ +S  +      RP+T  +  GQ    + L   I + +         LF GP G G
Sbjct: 2   LVAQIMSSYEPLHHKYRPQTFADLVGQEAIATTLSNAIASQRIA----PAYLFTGPRGTG 57

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIV 121
           KT+ A+++A+ L                ++   +T     DV+ ID      +  +  I+
Sbjct: 58  KTSSARILAKSLNCLAVEVPTAAPCGQCEVCRAITRGSALDVIEIDAASNTGVDNIREII 117

Query: 122 EEILYPAMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E   +  ++      ++ E             ++++    R   + ATT    +   +  
Sbjct: 118 ERSQFAPVQCRYKVYVIDECHMLSVAAFNALLKTLEEPPERVIFVLATTDPQRVLPTILS 177

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
           R           +E +   +   A+   + +  EA   +A  + G  R A
Sbjct: 178 RCQ-RFDYRRIPLEAMVNHLTIIAQKENIEIETEALILVAQIANGGLRDA 226


>gi|28870802|ref|NP_793421.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28854051|gb|AAO57116.1| DNA polymerase III, subunits gamma and tau [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 743

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 68/329 (20%), Positives = 98/329 (29%), Gaps = 67/329 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPR+  E  GQ      LK  I A    ++ L H  LF G  G+GKTT+A+++A+ L   
Sbjct: 11  RPRSFREMVGQAHV---LKALINA--LDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNCE 65

Query: 82  FRSTS------------------------GPVIAKAGDLAALLTNLE------DRDVLFI 111
              TS                             K  D   LL N++         V  I
Sbjct: 66  TGITSTPCGTCSVCKEIDEGRFVDLIEIDAASRTKVEDTRELLDNVQYAPSRGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         I ATT    L   + 
Sbjct: 126 DEVHMLSSHSFNALLKTLEE------------------PPPYVKFILATTDPQKLPATIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L     E +   +     +  +   D+A   +   + G+ R A  L  +   
Sbjct: 168 SRC-LQFSLKNMTPERVVEHLTHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAIA 226

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLD-------LRYLTMIARNFGGGPVGIET 284
           F E              A+L        FD L           L  +      GP     
Sbjct: 227 FGEGK-----VMAADVRAMLGTLDHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGV 281

Query: 285 ISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
           +S  L+           P  +  G   R 
Sbjct: 282 LSEILNVLHRVAIAQALPEGVDNGHGDRD 310


>gi|260432378|ref|ZP_05786349.1| DNA polymerase III subunits gamma and tau [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260416206|gb|EEX09465.1| DNA polymerase III subunits gamma and tau [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 584

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 63/312 (20%), Positives = 112/312 (35%), Gaps = 31/312 (9%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           + +++           RP T  +  GQ      LK   EA +         +  G  G G
Sbjct: 1   MTTQSSPAYQVLARKYRPETFADLVGQDAMVRTLKNAFEADRIAQA----FIMTGIRGTG 56

Query: 67  KTTLAQVVARELGV-NFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSI---- 119
           KTT A+++A+ +         GP     G     +  +E R  DVL +D   R  +    
Sbjct: 57  KTTTARIIAKGMNCIGPDGNGGPTTEPCGQCEHCVAIMEGRHVDVLEMDAASRTGVGDIR 116

Query: 120 -IVEEILYPAMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNP 169
            I++ + Y A        ++ E             ++++        I ATT +  +   
Sbjct: 117 EIIDSVRYRAASARYKIYIIDEVHMLSTSAFNALLKTLEEPPEHVKFIFATTEIRKVPVT 176

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           +  R      L   E E +  ++++ A   G  ++D+A   I   + G+ R A  LL   
Sbjct: 177 VLSRCQ-RFDLRRIEPEVMIGLLRKIATAEGAEISDDALALITRAAEGSARDATSLL--- 232

Query: 230 RDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGL 289
            D A    A   T +   A L      ++  D +D     ++  +  G    +    A  
Sbjct: 233 -DQAISHGAGETTADQVRAMLGLADRGRV-LDLMD----MILRGDAAGALTELGAQYAEG 286

Query: 290 SEPRDAIEDLIE 301
           ++P   + DL E
Sbjct: 287 ADPLAVLRDLAE 298


>gi|149235013|ref|XP_001523385.1| activator 1 37 kDa subunit [Lodderomyces elongisporus NRRL YB-4239]
 gi|146452794|gb|EDK47050.1| activator 1 37 kDa subunit [Lodderomyces elongisporus NRRL YB-4239]
          Length = 321

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 48/241 (19%), Positives = 79/241 (32%), Gaps = 40/241 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RPR L++  G  E    LK+      A+   + H++  G PG+GKTT    +A 
Sbjct: 9   PWVEKYRPRVLDDIVGNEETVERLKII-----AKDGNIPHMIISGLPGIGKTTSVHCLAY 63

Query: 77  ELGVNFRSTSGPVIAKAGDLA---------------ALLTNLEDRDVLFIDEIHRLSIIV 121
           EL          +   A D                  +L       ++ +DE   ++   
Sbjct: 64  ELLGKEYYHQATMELNASDDRGIDVVRNKIKQFAQTKILIPPGRTKIIILDEADSMTPGA 123

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           ++ L   ME +                 N +RF    A  +   +  PLQ R  I     
Sbjct: 124 QQALRRTMEIYS----------------NTTRFVF--ACNQSLKIIEPLQSRCAILRYNK 165

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA-GRLLRRVRDFAEVAHAKT 240
             + E L  +++   K   +   +E    +   + G  R A   L   V  F  V     
Sbjct: 166 LSDEEVLARLLE-IIKAEDVKFNNEGLQALIFSAEGDMRQAINNLQSTVAGFGFVNDVNV 224

Query: 241 I 241
            
Sbjct: 225 F 225


>gi|332215081|ref|XP_003256668.1| PREDICTED: replication factor C subunit 4 isoform 1 [Nomascus
           leucogenys]
 gi|332215083|ref|XP_003256669.1| PREDICTED: replication factor C subunit 4 isoform 2 [Nomascus
           leucogenys]
          Length = 363

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 77/234 (32%), Gaps = 45/234 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+ ++E   Q E  + LK  +E A      L ++LF GPPG GKT+     AR
Sbjct: 39  PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGAD-----LPNLLFYGPPGTGKTSTILAAAR 93

Query: 77  -------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD--------VLFIDEIH 115
                        EL  +       V  K  + A L  +    D        ++ +DE  
Sbjct: 94  ELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEAD 153

Query: 116 RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
            ++   +  L   ME                     +RF        V  +  PL  R  
Sbjct: 154 SMTSAAQAALRRTMEKESKT----------------TRF--CLICNYVSRIIEPLTSRCS 195

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
              R      +  +  +   AK   + ++DE    +   S G  R A   L+  
Sbjct: 196 -KFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSA 248


>gi|241725881|ref|XP_002412213.1| replication factor C, subunit RFC2, putative [Ixodes scapularis]
 gi|215505426|gb|EEC14920.1| replication factor C, subunit RFC2, putative [Ixodes scapularis]
          Length = 336

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 53/286 (18%), Positives = 98/286 (34%), Gaps = 40/286 (13%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD +  +++        +   RP    E  G  E  + L+VF     +R   + +V+  G
Sbjct: 5   MDVDSEVTQKRKDCVPWVEKYRPAKFNEIVGNEETIARLEVF-----SREGNVPNVILSG 59

Query: 62  PPGLGKTTLAQVVAR------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRD 107
           PPG+GKTT    ++R            EL  +       V  K    A     L      
Sbjct: 60  PPGVGKTTTILCLSRILLGPSFRDAVLELNASNDRGIDVVRNKIKMFAQKKVTLPPGKHK 119

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           V+ +DE   ++   ++ L   ME +                   +RF L   T+    + 
Sbjct: 120 VIILDEADSMTEGAQQALRRTMEIYSKT----------------TRFALACNTS--DKII 161

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA-GRLL 226
            P+Q R  +       + + L  ++    K   ++  ++    +   ++G  R A   L 
Sbjct: 162 EPIQSRCAVVRFSRLSDAQVLAKLLD-ICKQEDVSYAEDGLEALVFTAQGDMRQAINNLQ 220

Query: 227 RRVRDFAEVAHAKTI-TREIADAALLRLAIDKMGFDQLDLRYLTMI 271
                F+ V         +     L++  +      +LD  Y  M+
Sbjct: 221 STFVGFSHVNSENVFKVCDEPHPLLIKDMLQHCVEGELDKAYKIML 266


>gi|115655395|ref|XP_790650.2| PREDICTED: similar to replication factor C, 40-kDa subunit
           [Strongylocentrotus purpuratus]
 gi|115928698|ref|XP_001184083.1| PREDICTED: similar to replication factor C, 40-kDa subunit
           [Strongylocentrotus purpuratus]
          Length = 352

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 51/274 (18%), Positives = 92/274 (33%), Gaps = 40/274 (14%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           ++ S E   +   RP +L +  G  E  S L+VF     +R   + +V+  GPPG GKTT
Sbjct: 27  KSASYEMPWVEKYRPTSLSDVVGNEETVSRLEVF-----SREGNVPNVIIAGPPGTGKTT 81

Query: 70  LAQVVAR------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIH 115
               +AR            E+  +       V  K    A     L      ++ +DE  
Sbjct: 82  SILCLARTMLGASFKDAVLEMNASNERGIDVVRNKIKMFAQKKVTLPKGRHKIIILDEAD 141

Query: 116 RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
            ++   ++ +   ME F                   +RF    A      +  P+Q R  
Sbjct: 142 SMTGAAQQAMRRTMEVFSKT----------------TRF--ALACNASDKIIEPIQSRCA 183

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA-GRLLRRVRDFAE 234
           +       + + LK +++       +   ++    I   ++G  R A   L      F  
Sbjct: 184 VLRYSRLSDSQILKRLLE-ICAAENVDHAEDGLEAIIYTAQGDMRQAINNLQSTYAGFGS 242

Query: 235 VAHAKTI-TREIADAALLRLAIDKMGFDQLDLRY 267
           +         +     L++  +D      +D  Y
Sbjct: 243 ITSENVFKVCDEPHPQLIKSMLDHCVEADIDKAY 276


>gi|5263320|gb|AAD41422.1|AC007727_11 Similar to gb|M87339 replication factor C, 37-kDa subunit from Homo
           sapiens and is a member of PF|00004 ATPases associated
           with various cellular activities [Arabidopsis thaliana]
          Length = 319

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 83/244 (34%), Gaps = 46/244 (18%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           ++  +      +   RP+ +++   Q E    L   ++ A        H+LF GPPG GK
Sbjct: 1   MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADC-----PHMLFYGPPGTGK 55

Query: 68  TTLAQVVAR-------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------- 106
           TT A  +A              EL  +       V  K  D AA+      R        
Sbjct: 56  TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPS 115

Query: 107 -DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
             ++ +DE   ++   +  L   ME +                  ++RF  I     +  
Sbjct: 116 FKIIILDEADSMTEDAQNALRRTMETYS----------------KVTRFFFIC--NYISR 157

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           +  PL  R     R      E +   +       GL++  EA   ++  S+G  R A   
Sbjct: 158 IIEPLASRCA-KFRFKPLSEEVMSNRILHICNEEGLSLDGEALSTLSSISQGDLRRAITY 216

Query: 226 LRRV 229
           L+ V
Sbjct: 217 LQVV 220


>gi|330879129|gb|EGH13278.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 739

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 68/329 (20%), Positives = 98/329 (29%), Gaps = 67/329 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPR+  E  GQ      LK  I A    ++ L H  LF G  G+GKTT+A+++A+ L   
Sbjct: 11  RPRSFREMVGQAHV---LKALINA--LDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNCE 65

Query: 82  FRSTS------------------------GPVIAKAGDLAALLTNLE------DRDVLFI 111
              TS                             K  D   LL N++         V  I
Sbjct: 66  TGITSTPCGTCSVCKEIDEGRFVDLIEIDAASRTKVEDTRELLDNVQYAPSRGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         I ATT    L   + 
Sbjct: 126 DEVHMLSSHSFNALLKTLEE------------------PPPYVKFILATTDPQKLPATIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L     E +   +     +  +   D+A   +   + G+ R A  L  +   
Sbjct: 168 SRC-LQFSLKNMTPERVVEHLTHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAIA 226

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLD-------LRYLTMIARNFGGGPVGIET 284
           F E              A+L        FD L           L  +      GP     
Sbjct: 227 FGEGK-----VMAADVRAMLGTLDHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGV 281

Query: 285 ISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
           +S  L+           P  +  G   R 
Sbjct: 282 LSEILNVLHRVAIAQALPEGVDNGHGDRD 310


>gi|325927129|ref|ZP_08188395.1| DNA polymerase III, subunit gamma/tau [Xanthomonas perforans
           91-118]
 gi|325542497|gb|EGD13973.1| DNA polymerase III, subunit gamma/tau [Xanthomonas perforans
           91-118]
          Length = 420

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 42/244 (17%), Positives = 75/244 (30%), Gaps = 53/244 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+   E  GQ      L   +++ +         LF G  G+GKTT+A++ A+ L    
Sbjct: 11  RPKRFAELVGQEHVVRALSNALDSGRVHHA----FLFTGTRGVGKTTIARIFAKSLNCET 66

Query: 83  ------------------------RSTSGPVIAKAGDLAALLTNLE------DRDVLFID 112
                                               D+  ++ N +         V  ID
Sbjct: 67  GTSADPCGTCPACLDIDAGRYIDLLEIDAASNTGVDDVREVIENAQYMPSRGKFKVYLID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS      L   +E+                         + ATT    L   +  
Sbjct: 127 EVHMLSKAAFNALLKTLEE------------------PPEHVKFLLATTDPQKLPVTVLS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R  +   L   + + ++  + R      +     A  +++  + G+ R    LL +   +
Sbjct: 169 RC-LQFNLKRLDEDQIQGQMTRILAAEQIESDPSAIVQLSKAADGSLRDGLSLLDQAIAY 227

Query: 233 AEVA 236
           A  A
Sbjct: 228 AGGA 231


>gi|311028952|ref|ZP_07707042.1| DNA polymerase III subunits gamma and tau [Bacillus sp. m3-13]
          Length = 563

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 61/340 (17%), Positives = 115/340 (33%), Gaps = 46/340 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RP+T  +  GQ      L    + A  + +     LF GP G GKT+ A+++A+
Sbjct: 5   ALYRVFRPQTFADVVGQEHITKTL----QNALLQQKFSHAYLFSGPRGTGKTSAAKILAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAAL--LTNLEDRDVLFID-----EIHRLSIIVEEILYPAM 129
            +         PV     + +A   +T+    DV+ ID      +  +  I +++ Y   
Sbjct: 61  AVNCEH----APVAEPCNECSACKGITDGSISDVIEIDAASNNGVDEIRDIRDKVKYAPS 116

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                  ++ E             ++++        I ATT    +   +  R       
Sbjct: 117 SVKYKVYIIDEVHMLSIGAFNALLKTLEEPPKHVIFILATTEPHKIPLTIISRCQ-RFDF 175

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
                E +   +    +   +    +A   IA  + G  R A  L+ +   F+       
Sbjct: 176 KRITGESIVGRLATVLQAQEIEAEPQALAIIARAAEGGMRDALSLMDQAISFSNGLLTVQ 235

Query: 241 ITREIADAALLRLAID-KMGFDQLDL-RYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
               I  +       D   G    ++ + L  + + F  G            +P   +ED
Sbjct: 236 DALAITGSVSQSFMTDIVNGLYHKNVAQALDSLNQVFQSG-----------KDPARFLED 284

Query: 299 LIEPYMIQQGFIQRTP------RGRLLMPIAWQHLGIDIP 332
           LI  Y  +   + +T         R+ +  A+Q    +IP
Sbjct: 285 LIFYY--RDMLLYKTAPNLEQILDRVQVDEAFQRFAEEIP 322


>gi|295094180|emb|CBK83271.1| DNA polymerase III, subunits gamma and tau [Coprococcus sp.
           ART55/1]
          Length = 548

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 82/225 (36%), Gaps = 23/225 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH-VLFVGPPGLGKTTLAQVVARELGVN 81
           RP T +E  GQ    + L+  I+      + L H  LF G  G GKT++A++ A+     
Sbjct: 11  RPDTFDEVKGQDHIVTTLRNQIK-----NDRLGHAFLFCGTRGTGKTSIAKIFAKACNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDL 136
                 P    A      +++    +V+ ID      +  +  I EE+ YP  E      
Sbjct: 66  HPVDGSPCNECAS--CRAISDGSSLNVIEIDAASNNGVDNIRQIREEVAYPPTEGKYKVY 123

Query: 137 MVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ++ E             ++++   S    I ATT    +   +  R           ++ 
Sbjct: 124 IIDEVHMLSPGAFNALLKTLEEPPSYVIFILATTESHKIPITISSRCQKYDFRRI-PVDV 182

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           +   ++      GL    +A   IA    G+ R A  +L +   F
Sbjct: 183 ISDRLEELMNREGLDADKKAIDYIAKSGDGSMRDALSILDQCVAF 227


>gi|330963243|gb|EGH63503.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 741

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 68/329 (20%), Positives = 98/329 (29%), Gaps = 67/329 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPR+  E  GQ      LK  I A    ++ L H  LF G  G+GKTT+A+++A+ L   
Sbjct: 11  RPRSFREMVGQAHV---LKALINA--LDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNCE 65

Query: 82  FRSTS------------------------GPVIAKAGDLAALLTNLE------DRDVLFI 111
              TS                             K  D   LL N++         V  I
Sbjct: 66  TGITSTPCGTCSVCKEIDEGRFVDLIEIDAASRTKVEDTRELLDNVQYAPSRGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         I ATT    L   + 
Sbjct: 126 DEVHMLSSHSFNALLKTLEE------------------PPPYVKFILATTDPQKLPATIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L     E +   +     +  +   D+A   +   + G+ R A  L  +   
Sbjct: 168 SRC-LQFSLKNMTPERVVEHLTHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAIA 226

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLD-------LRYLTMIARNFGGGPVGIET 284
           F E              A+L        FD L           L  +      GP     
Sbjct: 227 FGEGK-----VMAADVRAMLGTLDHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGV 281

Query: 285 ISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
           +S  L+           P  +  G   R 
Sbjct: 282 LSEILNVLHRVAIAQALPEGVDNGHGDRD 310


>gi|224368757|ref|YP_002602918.1| DnaX [Desulfobacterium autotrophicum HRM2]
 gi|223691473|gb|ACN14756.1| DnaX [Desulfobacterium autotrophicum HRM2]
          Length = 590

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 79/221 (35%), Gaps = 21/221 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T +E  GQ    + LK  I            +L  GP G GKTT+A+++A+ +    
Sbjct: 11  RPQTFDEVVGQPHVTTTLKNAI----LSGRVPHAILLTGPRGTGKTTIARILAKAMNCE- 65

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV-----EEILYPAMEDFQLDLM 137
            +   P           +T     DV  ID     S+       E + Y          +
Sbjct: 66  -TGPTPTPCNICKTCTNITAGSAVDVFEIDGASNNSVDQVRELRENVAYMPSSSKFKIYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT V  +   +  R      L    +  +
Sbjct: 125 IDEVHMLSMAAFNALLKTLEEPPDHVIFIFATTEVHKIPVTILSRCQ-RHDLGRISLAQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
              +   A   G +++ E+   +A  + G+ R +  LL R+
Sbjct: 184 SAHLMTLAAAEGFSISQESCDLLAGEADGSMRDSLSLLDRI 224


>gi|318043030|ref|ZP_07974986.1| DNA polymerase III subunits gamma and tau [Synechococcus sp.
           CB0101]
          Length = 622

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 86/221 (38%), Gaps = 19/221 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  ++  GQ    + L   + + +         LF GP G GKT+ A+++AR L    
Sbjct: 13  RPQRFDQLVGQEAIAATLGNALRSGRIA----PAYLFSGPRGTGKTSSARILARSLNCIS 68

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P      +L   + N    DV+ ID      +  +  ++E   +  ++      +
Sbjct: 69  GDGPTPEPCGTCELCTSIANGNALDVIEIDAASNTGVDNIRELIERSRFAPVQARWKVYV 128

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           V E             ++++    R   + ATT    +   +  R           ++ L
Sbjct: 129 VDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTILSRCQ-RFDFRRIPLDAL 187

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           +  +   A+   +++T EA   +A R++G  R A  LL ++
Sbjct: 188 ERHLGWIAEQEQISITAEALHVVAQRAQGGLRDAESLLDQL 228


>gi|58262376|ref|XP_568598.1| DNA replication factor [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|57230772|gb|AAW47081.1| DNA replication factor, putative [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 327

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 80/236 (33%), Gaps = 37/236 (15%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           D  +   RP +L++     +  S ++ FIEA +     L H+L  GPPG GKT+    +A
Sbjct: 8   DDRVEKYRPVSLDDVVSHKDITSTIEKFIEAGR-----LPHLLLYGPPGTGKTSTVLALA 62

Query: 76  R-----ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLF--------IDEIHRLSIIVE 122
           R         +    +         +   + N     VLF        +DE   ++   +
Sbjct: 63  RRLYGPAYRKHILELNASDDRGIDVVREQIKNFAMTKVLFSKGFKLVILDEADMMTQAAQ 122

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             L   +E                                V  +T  +Q R     R + 
Sbjct: 123 SALRRVIEQHT------------------KNVRFCILCNYVNKITPAIQSRC-TRFRFSP 163

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
              ++++  V    +  G+ +TD+    I   SRG  R A  +L+      ++   
Sbjct: 164 LPEKEIQVKVDEVVQKEGVNLTDDGRDAILKLSRGDMRRALNVLQACHAAYDIVDE 219


>gi|70952026|ref|XP_745209.1| replication factor c subunit 4 [Plasmodium chabaudi chabaudi]
 gi|56525460|emb|CAH78469.1| replication factor c subunit 4, putative [Plasmodium chabaudi
           chabaudi]
          Length = 336

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 48/254 (18%), Positives = 91/254 (35%), Gaps = 39/254 (15%)

Query: 2   MDREGLLSRNVSQE-DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M+ +   +R + +  D  I   RP  LE+  G     + LK  I      +  + ++L  
Sbjct: 1   MEEDSFKNRLLKRNIDIWIEKYRPEYLEDVVGNPFVINTLKSII-----VSGNMPNLLLA 55

Query: 61  GPPGLGKTTLAQVVAREL------------GVNFRSTSGPVIAKAGDLAALLTNL--EDR 106
           G PG GKTT    +A E+              +       +  +    A  + +L     
Sbjct: 56  GAPGTGKTTSILCLASEMLGSQAKKAVLELNASDDRGINVIRDRIKSFAKEVISLPPGRH 115

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
            ++ +DE+  ++   ++ L   ME +                 + +RF    A  +   +
Sbjct: 116 KIIILDEVDSMTTAAQQSLRRIMELYS----------------DTTRF--ALACNQSEKI 157

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
            + LQ R  I       + + LK I++   +   +  TD+    I   + G  R A   L
Sbjct: 158 IDALQSRCAIIRYFKLTDDQVLKRILK-ICEYENIKYTDDGLETITFIADGDLRKAVNCL 216

Query: 227 RRVRDFAEVAHAKT 240
           +      EV + + 
Sbjct: 217 QSTYAGLEVINKEN 230


>gi|307129958|ref|YP_003881974.1| DNA polymerase III/DNA elongation factor III, tau and subunit
           gammas [Dickeya dadantii 3937]
 gi|306527487|gb|ADM97417.1| DNA polymerase III/DNA elongation factor III, tau and gamma
           subunits [Dickeya dadantii 3937]
          Length = 672

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 57/306 (18%), Positives = 105/306 (34%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKTT+A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTTIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGQCDTCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++        + ATT    L   +  R  +   L   + E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSRC-LQFHLKALDAEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  +Q+  +   LA    A   +A  + G+ R A  L     D A       +T      
Sbjct: 184 RQHLQQVLEQEQLAAEPRALQLLARAADGSLRDALSL----TDQAIAMGQGQVTAAAVSQ 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L       D+  L  +  + +  G G + +   +A      +A+       + +  
Sbjct: 240 MLGTLD------DEQPLALIEALIKGDGAGVMALMGQAASRGVDWEALLVETLTLLHRIA 293

Query: 309 FIQRTP 314
            +Q  P
Sbjct: 294 MLQLLP 299


>gi|238795502|ref|ZP_04639017.1| DNA polymerase III subunit gamma [Yersinia mollaretii ATCC 43969]
 gi|238720621|gb|EEQ12422.1| DNA polymerase III subunit gamma [Yersinia mollaretii ATCC 43969]
          Length = 655

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 93/244 (38%), Gaps = 29/244 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L   +   +         LF G  G+GKT++A+++A+ L    
Sbjct: 11  RPQTFADVVGQEHVLTALANSLSLGRIHHAY----LFSGTRGVGKTSIARLLAKGLNCET 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILY------PAMEDFQL 134
             T+ P     G  A  L   + R  D++ ID   R  +     L       PA   F++
Sbjct: 67  GITATP----CGTCANCLEIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKV 122

Query: 135 DLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            L+               ++++   +    + ATT    L   +  R  +   L   ++E
Sbjct: 123 YLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRC-LQFHLKVIDVE 181

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
            ++ ++++  +L  ++    A   +A  + G+ R A  L     D A      +IT    
Sbjct: 182 VIRALLEKILQLEHISSDARALQLLARAADGSMRDALSL----TDQAVAMGDGSITTATV 237

Query: 247 DAAL 250
              L
Sbjct: 238 SQML 241


>gi|229591983|ref|YP_002874102.1| DNA polymerase III subunits gamma and tau [Pseudomonas fluorescens
           SBW25]
 gi|229363849|emb|CAY51308.1| DNA polymerase III subunit Tau [Pseudomonas fluorescens SBW25]
          Length = 688

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 55/245 (22%), Positives = 80/245 (32%), Gaps = 55/245 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPR+  E  GQ      LK  I A    ++ L H  LF G  G+GKTT+A+++A+ L   
Sbjct: 11  RPRSFREMVGQTHV---LKALINA--LDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNCE 65

Query: 82  FRSTS------------------------GPVIAKAGDLAALLTNLE------DRDVLFI 111
              TS                             K  D   LL N++         V  I
Sbjct: 66  TGITSTPCGTCSVCKEIDEGRFVDLIEIDAASRTKVEDTRELLDNVQYAPSRGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         I ATT    L   + 
Sbjct: 126 DEVHMLSSHSFNALLKTLEE------------------PPPYVKFILATTDPQKLPATIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L     E +   +     +  +   D+A   +   + G+ R A  L  +   
Sbjct: 168 SRC-LQFSLKNMTPERVVEHLSHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAIA 226

Query: 232 FAEVA 236
           F E  
Sbjct: 227 FGEGK 231


>gi|555267|gb|AAA59231.1| helicase [Norwalk virus]
          Length = 64

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 40/64 (62%), Positives = 50/64 (78%)

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127
           TT++ ++A E+G N + T+GP I K GDL A+LT LE  DVLFIDEIHRL+ +VEEILYP
Sbjct: 1   TTMSMIIANEMGTNIKITTGPSIEKTGDLVAILTALEPGDVLFIDEIHRLNKVVEEILYP 60

Query: 128 AMED 131
           AM D
Sbjct: 61  AMGD 64


>gi|330981944|gb|EGH80047.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 736

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 68/329 (20%), Positives = 98/329 (29%), Gaps = 67/329 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPR+  E  GQ      LK  I A    ++ L H  LF G  G+GKTT+A+++A+ L   
Sbjct: 11  RPRSFREMVGQAHV---LKALINA--LDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNCE 65

Query: 82  FRSTS------------------------GPVIAKAGDLAALLTNLE------DRDVLFI 111
              TS                             K  D   LL N++         V  I
Sbjct: 66  TGITSTPCGTCSVCKEIDEGRFVDLIEIDAASRTKVEDTRELLDNVQYAPSRGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         I ATT    L   + 
Sbjct: 126 DEVHMLSSHSFNALLKTLEE------------------PPPYVKFILATTDPQKLPATIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L     E +   +     +  +   D+A   +   + G+ R A  L  +   
Sbjct: 168 SRC-LQFSLKNMTPERVVEHLTHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAIA 226

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLD-------LRYLTMIARNFGGGPVGIET 284
           F E              A+L        FD L           L  +      GP     
Sbjct: 227 FGEGK-----VMAADVRAMLGTLDHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGV 281

Query: 285 ISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
           +S  L+           P  +  G   R 
Sbjct: 282 LSEILNVLHRVAIAQALPEGVDNGHGDRD 310


>gi|257059952|ref|YP_003137840.1| DNA polymerase III, subunits gamma and tau [Cyanothece sp. PCC
           8802]
 gi|256590118|gb|ACV01005.1| DNA polymerase III, subunits gamma and tau [Cyanothece sp. PCC
           8802]
          Length = 650

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 80/225 (35%), Gaps = 19/225 (8%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +S  +      RP+T  +  GQ    + L   I A +         LF GP G GKT+ A
Sbjct: 1   MSSYEPLHHKYRPQTFADLVGQEAIATTLTNAIAAKRIA----PAYLFTGPRGTGKTSSA 56

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILY 126
           +++A+ L     S          ++   +      DV+ ID      +  +  I+E   +
Sbjct: 57  RILAKSLNCLAFSDPTATPCGKCEVCRAIARGSALDVIEIDAASNTGVDNIREIIERAQF 116

Query: 127 PAMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             ++      ++ E             ++++    R   + ATT    +   +  R    
Sbjct: 117 APVQCRYKVYVIDECHMLSVAAFNALLKTLEEPPDRVIFVLATTDPQRVLPTIISRCQ-R 175

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
                  ++ +   + + A+   + +  +A   +A  + G  R A
Sbjct: 176 FDYRRIPLDAMVNHLSKIAQQETIDIAQDALILVAQIANGGLRDA 220


>gi|17541988|ref|NP_500069.1| RFC (DNA replication factor) family member (rfc-2) [Caenorhabditis
           elegans]
 gi|2662601|gb|AAB88360.1| Rfc (dna replication factor) family protein 2 [Caenorhabditis
           elegans]
          Length = 334

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 56/309 (18%), Positives = 103/309 (33%), Gaps = 47/309 (15%)

Query: 8   LSRNVSQEDAD-ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           +S++  Q+ A  +   RP+ L +  G       LKV           + +++  GPPG G
Sbjct: 1   MSKSEKQQLAPWVEKYRPKVLADIVGNENIVERLKVI-----GHEGNVPNIVLSGPPGCG 55

Query: 67  KTTLAQVVAR------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFID 112
           KTT    +AR            EL  +       V  +    A     L      ++ +D
Sbjct: 56  KTTSVWALARELLGDKVKEAVLELNASDERGIDVVRHRIKTFAQTKVTLPEGRHKIIILD 115

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E   ++   ++ L   ME +                   +RF    A  +   +  P+Q 
Sbjct: 116 EADSMTDGAQQALRRTMEMYTKT----------------TRF--ALACNQSEKIIEPIQS 157

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R  + +R        L T V+  AK   +   D     I   ++G  R A   L+   + 
Sbjct: 158 RCAL-LRYTKLSPVQLLTRVKEVAKAEKVNYDDGGLEAILFTAQGDMRQALNNLQATVNA 216

Query: 233 AEVAHAKTITR--EIADAALLRLAIDKMGFDQLDLRYLTM--IARNFGGGPVGIETISAG 288
            E+ + + + +  +     L+   +        D ++     I   F       + I + 
Sbjct: 217 YELVNKENVLKVCDEPHPDLMIKMLHYC----TDRKFFEASKIIHEFHRLGFSSDDIVST 272

Query: 289 LSEPRDAIE 297
           L      +E
Sbjct: 273 LFRVVKTVE 281


>gi|227824621|ref|ZP_03989453.1| DNA polymerase III [Acidaminococcus sp. D21]
 gi|226905120|gb|EEH91038.1| DNA polymerase III [Acidaminococcus sp. D21]
          Length = 628

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 58/310 (18%), Positives = 108/310 (34%), Gaps = 40/310 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  +   GQ      L   +E+ +         LF GP G GKT+ A+++A+ L    
Sbjct: 11  RPQDFDGLVGQEHIRKALTNALESGRISHAY----LFTGPRGTGKTSTARILAKALNCEK 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
             T  P      D    +T     DV+ ID      I  +  + E++ +  +       +
Sbjct: 67  GPTPHPCNTC--DHCREITEGTSADVIEIDAASNRGIDEIRKLREQVHFAPVSSRYKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT    +   +  R           ++D+
Sbjct: 125 IDEVHMITADAFNALLKTLEEPPEHVVFILATTEPQKIPTTIHSRCQ-RFDFRRVTVDDI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              +Q+ A+ + +    +A   +A+++ G  R A  LL +    A       +T E    
Sbjct: 184 AAHLQKVAEGSNINAEPDALRLMAIQADGGMRDAVGLLDQCSIMA-----NPVTAETVRQ 238

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGG--PVGIETISAGLSEPRDAIEDLIE--PYM 304
            L     D M            +    G    P  ++ ++  + + +D  + L E   YM
Sbjct: 239 VLGIAGRDTM----------RALVEKIGRRDLPAALDLLNQLMDDGKDVTQVLTELLEYM 288

Query: 305 IQQGFIQRTP 314
                 Q  P
Sbjct: 289 RALLLYQADP 298


>gi|198413770|ref|XP_002129710.1| PREDICTED: similar to replication factor C (activator 1) 5 (36.5
           kDa) [Ciona intestinalis]
          Length = 327

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 73/225 (32%), Gaps = 38/225 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP +L++     +  S +  F+         L H+LF GPPG GKT+     AR
Sbjct: 9   PWVEKYRPESLDDLISHEDILSTISGFL-----AQNRLPHLLFYGPPGTGKTSTILACAR 63

Query: 77  ------ELGVNFRSTSGPVIAKAGDLA-ALLTNLEDRDVL-------FIDEIHRLSIIVE 122
                 +        +       G +   +L+    R +         +DE   ++   +
Sbjct: 64  KLYSTTQFNSMVLELNASDDRGIGVVRNQILSFASTRTIFNKGFKLIILDEADAMTKDAQ 123

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             L   ME F       E                      +  +   +Q R     R   
Sbjct: 124 NALRRVMEKF------MENTRF------------CLICNYLTKIIPAIQSRC-TRFRFGP 164

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
              + + + ++   K+  L VT++    +   + G  R A  +L+
Sbjct: 165 LTTDKISSRLEYIIKVEQLNVTEDGLNALVTLANGDMRKALNILQ 209


>gi|167999374|ref|XP_001752392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162696292|gb|EDQ82631.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 333

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 44/257 (17%), Positives = 79/257 (30%), Gaps = 39/257 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP  + +  G  +  + L+V      A+   + +++F GPPG GKTT    +A 
Sbjct: 17  PWVEKYRPHRVADIVGNQDVVARLQVI-----AQGGNMPNLIFSGPPGTGKTTSILALAH 71

Query: 77  E-----LGVNFRSTSGPVIAKAGDLAALLTNLEDR---------DVLFIDEIHRLSIIVE 122
           E             +         +   +     +          V+ +DE   ++   +
Sbjct: 72  ELLGPNFKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVLLDEADSMTAGAQ 131

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           + L   ME +                 N +RF    A      +  P+Q R  I      
Sbjct: 132 QALRRTMEIYS----------------NTTRF--ALACNLSSKIIEPIQSRCAIVRFSRL 173

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE-VAHAKTI 241
            + E L  ++ R  +   +    E    +   + G  R A   L+      + V      
Sbjct: 174 SDSEILDRLL-RVVEAEKVPYVPEGLEAVVFTADGDMRQALNNLQATFSGFQFVNQDNVF 232

Query: 242 TREIADAALLRLAIDKM 258
                   LL   I K 
Sbjct: 233 RVCDQPHPLLAQQIIKH 249


>gi|153006600|ref|YP_001380925.1| DNA polymerase III subunits gamma/tau [Anaeromyxobacter sp.
           Fw109-5]
 gi|152030173|gb|ABS27941.1| DNA polymerase III, subunits gamma and tau [Anaeromyxobacter sp.
           Fw109-5]
          Length = 606

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 55/242 (22%), Positives = 88/242 (36%), Gaps = 25/242 (10%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+   E +GQ      L      A    +     LF GP G+GKTT A++VA+ L
Sbjct: 7   ARKYRPQQFGEMSGQQHVVRTLS----NALKTGQLAHAFLFTGPRGVGKTTTARLVAKAL 62

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR--DVLFID-----EIHRLSIIVEEILYPAMED 131
                   GP     G     +   E R  DV+ ID      +  +  IVE + Y    D
Sbjct: 63  NCEK----GPTAEPCGACTPCVEIAEGRAVDVVEIDAASNNGVDNVRDIVEAVKYRPARD 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                +V E             ++++        + ATT V  +   +  R         
Sbjct: 119 RYKVFVVDEVHMLSTGAFNALLKTLEEPPEHVKFVLATTDVHKVPETILSRCQ-RFDFRR 177

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
             ++ +   + + A+  G+ +   A   +A ++ G  R A  LL +VR  A  A  +   
Sbjct: 178 LTLQQIADQLAKVAEAEGMRLAPGALALVARQAEGGMRDALSLLDQVRAAAGDAPDEAAV 237

Query: 243 RE 244
            E
Sbjct: 238 AE 239


>gi|71028744|ref|XP_764015.1| replication factor C subunit 3 [Theileria parva strain Muguga]
 gi|68350969|gb|EAN31732.1| replication factor C subunit 3, putative [Theileria parva]
          Length = 347

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 42/265 (15%), Positives = 87/265 (32%), Gaps = 16/265 (6%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP TL++     +  S L +F E  +     L H+LF GPPG GKT+    ++R
Sbjct: 8   PWVEKYRPETLQDIISHEDIMSTLMIFAEKGQ-----LPHLLFHGPPGSGKTSTILAISR 62

Query: 77  -----ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
                +        +         +   +    +    F   +         +    +++
Sbjct: 63  YLYGSQRNGFVLELNASDERGIDTVRDQIKAFSETSNTFTSTMPVDDPPRTNLKLIILDE 122

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
                   +    R ++I  +          +  +  P+Q R     R    + + ++  
Sbjct: 123 ADQMTNAAQNALRRIMEIYSNNVRFCLICNFMNKIIPPIQSRC-TGFRFQPLKSDVVRER 181

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           ++  AKL  + +TD A   +    +G  R     L+ V   +    A          A  
Sbjct: 182 IREIAKLENVKITDCALDALVEIGQGDMRRVLNCLQ-VTSMSHAKGADFTIDANLILATS 240

Query: 252 RLAIDKMGFDQLDLRYLTMIARNFG 276
            L        ++D    +++  +F 
Sbjct: 241 GLPQSS----EIDHLLKSLMQNSFK 261


>gi|120601240|ref|YP_965640.1| subunits gamma and tau [Desulfovibrio vulgaris DP4]
 gi|120561469|gb|ABM27213.1| DNA polymerase III, tau subunit [Desulfovibrio vulgaris DP4]
          Length = 622

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 83/231 (35%), Gaps = 21/231 (9%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +  RP+T  E  GQ    +   +   AA+    A  + LF G  G+GKTT+A++ A+ L 
Sbjct: 8   ARYRPQTFAEVAGQETVKA---ILSRAAQENRVAPAY-LFSGTRGVGKTTIARIFAKALN 63

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHR-----LSIIVEEILYPAMEDFQL 134
               + +G           +   +   DV+ ID            + E I Y  ME    
Sbjct: 64  CAT-APTGEPCNTCEQCRKVTQGMHV-DVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             ++ E             ++++   +R T + ATT        +  R            
Sbjct: 122 VFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQ-HFTFTRLSE 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
             L+  + +     G+     A   IA R+ G+ R +  LL +V    E  
Sbjct: 181 AGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVLALGESR 231


>gi|148543563|ref|YP_001270933.1| DNA polymerase III, subunits gamma and tau [Lactobacillus reuteri
           DSM 20016]
 gi|184152970|ref|YP_001841311.1| DNA polymerase III gamma and tau subunits [Lactobacillus reuteri
           JCM 1112]
 gi|227363477|ref|ZP_03847599.1| DNA polymerase III, subunits gamma and tau [Lactobacillus reuteri
           MM2-3]
 gi|325681913|ref|ZP_08161431.1| DNA polymerase III, gamma/tau subunit DnaX [Lactobacillus reuteri
           MM4-1A]
 gi|148530597|gb|ABQ82596.1| DNA polymerase III, subunits gamma and tau [Lactobacillus reuteri
           DSM 20016]
 gi|183224314|dbj|BAG24831.1| DNA polymerase III gamma and tau subunits [Lactobacillus reuteri
           JCM 1112]
 gi|227071491|gb|EEI09792.1| DNA polymerase III, subunits gamma and tau [Lactobacillus reuteri
           MM2-3]
 gi|324978557|gb|EGC15506.1| DNA polymerase III, gamma/tau subunit DnaX [Lactobacillus reuteri
           MM4-1A]
          Length = 611

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 83/227 (36%), Gaps = 23/227 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+  ++  GQ      LK  I         + H  LF GP G GKT+ A++ A+ +  +
Sbjct: 11  RPQRFDDLVGQQIVTRTLKNAI-----ITHQISHAYLFAGPRGTGKTSAAKIFAKAVNCH 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDL 136
                 P      ++   +TN +  DV+ ID      +  +  I ++  Y   +      
Sbjct: 66  HSKDGEPCNEC--EICKAITNGQLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQADYKVY 123

Query: 137 MVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ++ E             ++++   +    I ATT    +   +  R            ED
Sbjct: 124 IIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPLTIISRVQ-RFDFRRISAED 182

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
               ++       +   ++A   IA  + G  R A  +L +V  F++
Sbjct: 183 AFNRMKYILDQKKVTYDEKALWVIANAAEGGMRDALSILDQVLSFSD 229


>gi|47221499|emb|CAG08161.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 335

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 73/225 (32%), Gaps = 38/225 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+ L++     +  S ++ FI       + L H+LF GPPG GKT+     AR
Sbjct: 15  PWVEKYRPQKLDDLISHKDILSTIQRFIS-----EDKLPHLLFYGPPGTGKTSTILACAR 69

Query: 77  ------ELGVNFRSTSGPVIAKAGDLAA-LLTNLEDRDVL-------FIDEIHRLSIIVE 122
                 E        +         +   +L+    R +         +DE   ++   +
Sbjct: 70  QLYRDKEFNSMVLELNASDDRGIDVVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQ 129

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             L   +E F       E      +   LS+                LQ R     R   
Sbjct: 130 NALRRVIEKF------TENTRFCLICNYLSKIIP------------ALQSRC-TRFRFGP 170

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
              + +   ++   +   + VT +    I   S G  R +  +L+
Sbjct: 171 LSPDQMVPRLEHVIQQESIDVTPDGMKAIVTLSSGDMRRSLNILQ 215


>gi|289662384|ref|ZP_06483965.1| DNA polymerase III subunits gamma and tau [Xanthomonas campestris
           pv. vasculorum NCPPB702]
          Length = 365

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 42/244 (17%), Positives = 75/244 (30%), Gaps = 53/244 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+   E  GQ      L   +++ +         LF G  G+GKTT+A++ A+ L    
Sbjct: 11  RPKRFAELVGQEHVVRALSNALDSGRVHHA----FLFTGTRGVGKTTIARIFAKSLNCET 66

Query: 83  ------------------------RSTSGPVIAKAGDLAALLTNLE------DRDVLFID 112
                                               D+  ++ N +         V  ID
Sbjct: 67  GTSADPCGQCPACLDIDAGRYIDLLEIDAASNTGVDDVREVIENAQYMPSRGKFKVYLID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS      L   +E+                         + ATT    L   +  
Sbjct: 127 EVHMLSKAAFNALLKTLEE------------------PPEHVKFLLATTDPQKLPVTVLS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R  +   L   + + ++  + R      +     A  +++  + G+ R    LL +   +
Sbjct: 169 RC-LQFNLKRLDEDQIQGQMTRILAAEQIESDPSAIVQLSKAADGSLRDGLSLLDQAIAY 227

Query: 233 AEVA 236
           A  A
Sbjct: 228 AGGA 231


>gi|172041592|ref|YP_001801306.1| DNA polymerase III subunits gamma and tau [Corynebacterium
           urealyticum DSM 7109]
 gi|171852896|emb|CAQ05872.1| DNA polymerase III, gamma and tau subunits [Corynebacterium
           urealyticum DSM 7109]
          Length = 1102

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 44/235 (18%), Positives = 78/235 (33%), Gaps = 27/235 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP +  E  GQ      L V +++ +         LF GP G GKT+ A+++AR
Sbjct: 2   ALYRKYRPASFAEVVGQEHVTEPLSVALDSGRINHAY----LFSGPRGCGKTSSARILAR 57

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR----DVLFID-----EIHRLSIIVEEILYP 127
            L        GP     G   + +          DV  +D      +  +  + +   Y 
Sbjct: 58  SLNC----VEGPTSTPCGKCDSCIALAPGGPGSLDVTELDAASHRGVDDMRELRDRAFYA 113

Query: 128 AMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
             +      ++ E             + V+        I ATT    L   ++ R     
Sbjct: 114 PADSRYRVFIIDEAHMITTEGFNTLLKIVEEPPEHLIFIFATTEPEKLLATIRSR-THNY 172

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                   D++ ++ R     G  V D     +     G+PR +  ++ ++   A
Sbjct: 173 PFRLLTPPDMRGLLGRIVADEGAVVEDAVYPLVVRAGGGSPRDSLSIMDQLLAGA 227


>gi|152988097|ref|YP_001349155.1| DNA polymerase III subunits gamma and tau [Pseudomonas aeruginosa
           PA7]
 gi|150963255|gb|ABR85280.1| DNA polymerase III subunit tau [Pseudomonas aeruginosa PA7]
          Length = 681

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 63/313 (20%), Positives = 95/313 (30%), Gaps = 37/313 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPR+  E  GQ      LK  I A     + L H  LF G  G+GKTT+A+++A+ L   
Sbjct: 11  RPRSFREMVGQTHV---LKALINA--LDNQRLHHAYLFTGTRGVGKTTIARILAKCLNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEIL-----YPAMEDFQL 134
              +S P     G+ +      E R  D++ +D   R  +     L     Y        
Sbjct: 66  TGVSSTP----CGECSVCREIDEGRFVDLIEVDAASRTKVEDTRELLDNVQYSPTRGRYK 121

Query: 135 DLMVGEGPSARSVKIN---------LSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             ++ E     S   N               + ATT    L   +  R  +   L     
Sbjct: 122 VYLIDEVHMLSSHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSRC-LQFSLKNMPP 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           E +   +        +   D+A   +   + G+ R A  L     D A       +    
Sbjct: 181 ERVVEHLTHVLGAENVPFEDDALWLLGRAADGSMRDAMSL----TDQAIAFGEGKVLAAD 236

Query: 246 ADAAL-LRLAIDKMG-----FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
             A L         G      D      L  +      GP     ++  L+         
Sbjct: 237 VRAMLGTLDHGQVYGVLQALLDGDARALLEAVRHLAEQGPDWGGVLAEMLNVLHRVAIAQ 296

Query: 300 IEPYMIQQGFIQR 312
             P  I  G   R
Sbjct: 297 ALPEAIDNGQGDR 309


>gi|70729286|ref|YP_259023.1| DNA polymerase III subunits gamma and tau [Pseudomonas fluorescens
           Pf-5]
 gi|68343585|gb|AAY91191.1| DNA polymerase III, gamma and tau subunits [Pseudomonas fluorescens
           Pf-5]
          Length = 692

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 55/245 (22%), Positives = 80/245 (32%), Gaps = 55/245 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPR+  E  GQ      LK  I A    ++ L H  LF G  G+GKTT+A+++A+ L   
Sbjct: 11  RPRSFREMVGQTHV---LKALINA--LDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNCE 65

Query: 82  FRSTS------------------------GPVIAKAGDLAALLTNLE------DRDVLFI 111
              TS                             K  D   LL N++         V  I
Sbjct: 66  TGITSTPCGTCSVCCEIDEGRFVDLIEIDAASRTKVEDTRELLDNVQYAPSRGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         I ATT    L   + 
Sbjct: 126 DEVHMLSSHSFNALLKTLEE------------------PPPYVKFILATTDPQKLPATIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L     E +   +     +  +   D+A   +   + G+ R A  L  +   
Sbjct: 168 SRC-LQFSLKNMTPERVVEHLSHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAIA 226

Query: 232 FAEVA 236
           F E  
Sbjct: 227 FGEGK 231


>gi|134118756|ref|XP_771881.1| hypothetical protein CNBN0610 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50254485|gb|EAL17234.1| hypothetical protein CNBN0610 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 327

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 44/236 (18%), Positives = 80/236 (33%), Gaps = 37/236 (15%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           D  +   RP +L++     +  S ++ FIEA +     L H+L  GPPG GKT+    +A
Sbjct: 8   DDRVEKYRPVSLDDVVSHKDITSTIEKFIEAGR-----LPHLLLYGPPGTGKTSTVLALA 62

Query: 76  R-----ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLF--------IDEIHRLSIIVE 122
           R         +    +         +   + N     VLF        +DE   ++   +
Sbjct: 63  RRLYGPAYRKHILELNASDDRGIDVVREQIKNFAMTKVLFSKGFKLVILDEADMMTQAAQ 122

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             L   +E                                V  +T  +Q R     R + 
Sbjct: 123 SALRRVIEQHT------------------KNVRFCILCNYVNKITPAIQSRC-TRFRFSP 163

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
              ++++  V    +  G+ +TD+    +   SRG  R A  +L+      ++   
Sbjct: 164 LPEKEIQVKVDEVVQKEGVNLTDDGRDALLKLSRGDMRRALNVLQACHAAYDIVDE 219


>gi|311269763|ref|XP_003132629.1| PREDICTED: replication factor C subunit 4-like [Sus scrofa]
          Length = 364

 Score = 69.7 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 59/284 (20%), Positives = 91/284 (32%), Gaps = 61/284 (21%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+ ++E   Q E  + LK  +E A      L ++LF GPPG GKT+     AR
Sbjct: 39  PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGAD-----LPNLLFYGPPGTGKTSTILAAAR 93

Query: 77  -------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD--------VLFIDEIH 115
                        EL  +       V  K  + A L  +    D        ++ +DE  
Sbjct: 94  ELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEAD 153

Query: 116 RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
            ++   +  L   ME                     +RF        V  +  PL  R  
Sbjct: 154 SMTSAAQAALRRTMEKESKT----------------TRF--CLICNYVSRIIEPLTSRCS 195

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL--------- 226
              R      +  +  +   A    + ++DE    +   S G  R A   L         
Sbjct: 196 -KFRFKPLSDKIQQQRLLDIADKEHVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGG 254

Query: 227 -----RRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDL 265
                + + D A V    T T +   AA    + DK+     DL
Sbjct: 255 KEVTEKMITDIAGV--VPTETIDGVLAACQSGSFDKLEAVVKDL 296


>gi|299471716|emb|CBN76937.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 332

 Score = 69.7 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 41/236 (17%), Positives = 77/236 (32%), Gaps = 38/236 (16%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           + S     E   +   RP  L++  G  +    LKV  E        + +V+  GPPG G
Sbjct: 1   MASTTDDFEVPWVEKYRPNKLDDVVGNEQTLDRLKVIAEEG-----NMPNVIICGPPGTG 55

Query: 67  KTTLAQVVARELGVNFRST-----SGPVIAKAGDLAALLTNL---------EDRDVLFID 112
           KTT    +A  +  +  +      +         +   +                V+ +D
Sbjct: 56  KTTSVHALAHTMLGDAYANAVLELNASDSRGIEVVRNTIKMFTQKKVTLPPGQHKVIILD 115

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E   ++   ++ L   ME +           + + +  L       A      +  P+Q 
Sbjct: 116 EADSMTASAQQALRRTMEIY-----------SHTTRFAL-------ACNVSTKIIEPIQS 157

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
           R  I       E E L   +Q+  +   ++ + +    I   + G  R A   L+ 
Sbjct: 158 RCAILRFSRLSEEEILLR-LQQVCEAEQVSYSPDGLEAIIFTAEGDMRNALNNLQA 212


>gi|242279902|ref|YP_002992031.1| DNA polymerase III, subunits gamma and tau [Desulfovibrio
           salexigens DSM 2638]
 gi|242122796|gb|ACS80492.1| DNA polymerase III, subunits gamma and tau [Desulfovibrio
           salexigens DSM 2638]
          Length = 638

 Score = 69.7 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 48/251 (19%), Positives = 89/251 (35%), Gaps = 25/251 (9%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +  RP+T  E  GQ    + L      A A+ +     LF G  G+GKTT+A++ A+ L 
Sbjct: 8   AKYRPQTFGEVAGQEAVKTILSR----AAAQDKVAPAYLFSGTRGVGKTTIARIFAKALN 63

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQL 134
               + +     +  +   +   +   DV+ ID     ++     + E+I Y  +E    
Sbjct: 64  CKN-APTAEPCNECDNCRQITAGVGV-DVVEIDAASHGKVDDARRLKEDIGYAPIEFRYK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             ++ E             ++++      T I ATT        +  R            
Sbjct: 122 VFIIDEAHMLTVQAFNALLKTLEEPPPHATFIMATTETHKFPATIISRCQHYAFKML-TN 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           ++L   +     +  +     A   IA R  G+ R +  LL +V        ++ +  E 
Sbjct: 181 DELIAHLSNILNMEQIEFEQGAVDLIAKRGAGSVRDSMSLLGQVLAL----GSEKLLEED 236

Query: 246 ADAALLRLAID 256
             + L     D
Sbjct: 237 VRSILGLAGRD 247


>gi|19073988|ref|NP_584594.1| DNA REPLICATION FACTOR (ACTIVATOR 1) 36 kDa SUBUNIT
           [Encephalitozoon cuniculi GB-M1]
 gi|19068630|emb|CAD25098.1| DNA REPLICATION FACTOR (ACTIVATOR 1) 36 kDa SUBUNIT
           [Encephalitozoon cuniculi GB-M1]
          Length = 283

 Score = 69.7 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 69/189 (36%), Gaps = 15/189 (7%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR- 76
                RP++ + F G     + L+       +      ++L  GPPG GKTT A ++A  
Sbjct: 3   WTEKYRPKSTDAFEGPEHLKNILR------NSSGRGHPNLLLYGPPGTGKTTFAHLLASQ 56

Query: 77  --ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
             EL  +       +  K    A+ L   +D+ V+ +DE   L+   +  L   +ED   
Sbjct: 57  KLELNASDERGISVIREKIKVYASTLG--KDKTVI-LDECENLTSDAQHCLRRVIEDSVN 113

Query: 135 DLMV-GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE--IEDLKTI 191
              +      ++ +    SR   +  T     +   +  + G+      Y   ++     
Sbjct: 114 TRFIFITNYPSKIIGPLRSRLVSVKFTPTESKILENIGSKEGLGYDKELYHRILKLCGND 173

Query: 192 VQRGAKLTG 200
           ++R   +  
Sbjct: 174 LRRAINVLQ 182


>gi|147858312|emb|CAN83520.1| hypothetical protein VITISV_019805 [Vitis vinifera]
          Length = 341

 Score = 69.7 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 60/302 (19%), Positives = 98/302 (32%), Gaps = 57/302 (18%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           ++  +      +   RP+ +++   Q E    L   +E          H+LF GPPG GK
Sbjct: 1   MAPVLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLE-----TTNCPHMLFYGPPGTGK 55

Query: 68  TTLAQVVAR-------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------- 106
           TT A  +A              EL  +       V  K  D A +      R        
Sbjct: 56  TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAXVAVGSGHRQGGYPCPP 115

Query: 107 -DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
             ++ +DE   ++   +  L   ME +                  ++RF  I     +  
Sbjct: 116 YKIIILDEADSMTEDAQNALRRTMETYS----------------KVTRFFFIC--NYISR 157

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           +  PL  R     R      E + + +    K   L +  EA   ++  S+G  R A   
Sbjct: 158 IIEPLASRCA-KFRFKPLSEEIMSSRILHICKEEELNLDSEALSTLSSISQGDLRRAITY 216

Query: 226 LR-RVRDFAEVAHAKT------ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
           L+   R F  +  +K       +  +    AL         FD  +     +IA    G 
Sbjct: 217 LQGAARLFGSIISSKDLISVSGVVPQHVVQALFAAC-KSGDFDSANKEVNNVIAE---GY 272

Query: 279 PV 280
           PV
Sbjct: 273 PV 274


>gi|289667731|ref|ZP_06488806.1| DNA polymerase III subunits gamma and tau [Xanthomonas campestris
           pv. musacearum NCPPB4381]
          Length = 355

 Score = 69.7 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 42/244 (17%), Positives = 75/244 (30%), Gaps = 53/244 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+   E  GQ      L   +++ +         LF G  G+GKTT+A++ A+ L    
Sbjct: 11  RPKRFAELVGQEHVVRALSNALDSGRVHHA----FLFTGTRGVGKTTIARIFAKSLNCET 66

Query: 83  ------------------------RSTSGPVIAKAGDLAALLTNLE------DRDVLFID 112
                                               D+  ++ N +         V  ID
Sbjct: 67  GTSADPCGQCPACLDIDAGRYIDLLEIDAASNTGVDDVREVIENAQYMPSRGKFKVYLID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS      L   +E+                         + ATT    L   +  
Sbjct: 127 EVHMLSKAAFNALLKTLEE------------------PPEHVKFLLATTDPQKLPVTVLS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R  +   L   + + ++  + R      +     A  +++  + G+ R    LL +   +
Sbjct: 169 RC-LQFNLKRLDEDQIQGQMTRILAAEQIESDPSAIVQLSKAADGSLRDGLSLLDQAIAY 227

Query: 233 AEVA 236
           A  A
Sbjct: 228 AGGA 231


>gi|227431248|ref|ZP_03913302.1| possible DNA-directed DNA polymerase [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
 gi|227353010|gb|EEJ43182.1| possible DNA-directed DNA polymerase [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
          Length = 578

 Score = 69.7 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 47/237 (19%), Positives = 80/237 (33%), Gaps = 40/237 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RPR+ ++  GQ      LK  I A +    A    LF GP G GKT+ A++ AR
Sbjct: 10  ALYRVYRPRSFDDMVGQKIITQTLKNAI-ATQQTGHAY---LFSGPRGTGKTSAAKIFAR 65

Query: 77  ELG-----------VNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSI 119
           E+             +             ++  +           +  +  IDE+H LS 
Sbjct: 66  EVNGIAPETDDSQIPDIIEIDAASNNGVDEIRNIRDGANYAPIESEYKIYIIDEVHMLSS 125

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
                L   +E+                    +    I ATT    +   +  R      
Sbjct: 126 GAFNALLKTLEE------------------PPANVKFILATTEPQKIPATILSRTQ-RFE 166

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
               + + ++  +    +  G++  D+A   IA  + G  R A  +L +V  F    
Sbjct: 167 FKRIDNDTIQARMAEILQKEGVSFDDDALHIIANVAEGGMRDALSILDQVLAFGADH 223


>gi|188992754|ref|YP_001904764.1| DNA polymerase III subunits gamma and tau [Xanthomonas campestris
           pv. campestris str. B100]
 gi|167734514|emb|CAP52724.1| DNA polymerase III tau and gamma subunits [Xanthomonas campestris
           pv. campestris]
          Length = 752

 Score = 69.7 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 42/244 (17%), Positives = 75/244 (30%), Gaps = 53/244 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+   E  GQ      L   +++ +         LF G  G+GKTT+A++ A+ L    
Sbjct: 110 RPKRFAELVGQEHVVRALSNALDSGRVHHA----FLFTGTRGVGKTTIARIFAKSLNCET 165

Query: 83  ------------------------RSTSGPVIAKAGDLAALLTNLE------DRDVLFID 112
                                               D+  ++ N +         V  ID
Sbjct: 166 GTSADPCGTCPACLDIDAGRYIDLLEIDAASNTGVDDVREVIENAQYMPSRGKFKVYLID 225

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS      L   +E+                         + ATT    L   +  
Sbjct: 226 EVHMLSKAAFNALLKTLEE------------------PPEHVKFLLATTDPQKLPVTVLS 267

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R  +   L   + + ++  + R      +     A  +++  + G+ R    LL +   +
Sbjct: 268 RC-LQFNLKRLDEDQIQGQMTRILAAEEIESDPSAIVQLSKAADGSLRDGLSLLDQAIAY 326

Query: 233 AEVA 236
           A  A
Sbjct: 327 AGGA 330


>gi|148655673|ref|YP_001275878.1| DNA polymerase III subunits gamma and tau [Roseiflexus sp. RS-1]
 gi|148567783|gb|ABQ89928.1| DNA polymerase III, subunits gamma and tau [Roseiflexus sp. RS-1]
          Length = 599

 Score = 69.7 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 47/255 (18%), Positives = 90/255 (35%), Gaps = 25/255 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     R +T +E  GQ      L+  I   +         LF GP G+GKTT+A+++A+
Sbjct: 5   ALYRRYRSQTFDELIGQEHVVRTLRNAIAEGRVAHAY----LFTGPRGVGKTTVARLLAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE------EILYPAME 130
              VN  +          +    +      DV+ +D     S+             PA+ 
Sbjct: 61  A--VNCTAPPAERPCGVCESCRAIAEGHAVDVIEMDAASHTSVEDAREIIERVQFRPAVA 118

Query: 131 DFQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             ++ ++               ++++        I ATT V  +   +  R       N 
Sbjct: 119 RTKVYIIDEVHMLSTAAFNALLKTLEEPPPHALFILATTEVHKVPATILSRCQ-RFVFNR 177

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           + +  +   ++  A   G+ +    A  IA  + G+ R A  +L ++  +       TI+
Sbjct: 178 HTVASIAAHLRSIAAQEGVTLEAGVAEAIARAATGSMRDALSVLDQLMAY----GGGTIS 233

Query: 243 REIADAALLRLAIDK 257
            E     L    + +
Sbjct: 234 LEQVRNLLGAGEMQE 248


>gi|331015914|gb|EGH95970.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 736

 Score = 69.7 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 68/329 (20%), Positives = 98/329 (29%), Gaps = 67/329 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPR+  E  GQ      LK  I A    ++ L H  LF G  G+GKTT+A+++A+ L   
Sbjct: 11  RPRSFREMVGQAHV---LKALINA--LDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNCE 65

Query: 82  FRSTS------------------------GPVIAKAGDLAALLTNLE------DRDVLFI 111
              TS                             K  D   LL N++         V  I
Sbjct: 66  TGITSTPCGTCSVCKEIDEGRFVDLIEIDAASRTKVEDTRELLDNVQYAPSRGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         I ATT    L   + 
Sbjct: 126 DEVHMLSSHSFNALLKTLEE------------------PPPYVKFILATTDPQKLPATIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L     E +   +     +  +   D+A   +   + G+ R A  L  +   
Sbjct: 168 SRC-LQFSLKNMTPERVVEHLTHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAIA 226

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLD-------LRYLTMIARNFGGGPVGIET 284
           F E              A+L        FD L           L  +      GP     
Sbjct: 227 FGEGK-----VMAADVRAMLGTLDHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGV 281

Query: 285 ISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
           +S  L+           P  +  G   R 
Sbjct: 282 LSEILNVLHRVAIAQALPEGVDNGHGDRD 310


>gi|332704007|ref|ZP_08424095.1| DNA polymerase III, subunits gamma and tau [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332554156|gb|EGJ51200.1| DNA polymerase III, subunits gamma and tau [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 605

 Score = 69.7 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 81/223 (36%), Gaps = 25/223 (11%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +  RP+   E  GQ    + L     AAK    A  + LF G  G+GKTTLA+++A+ + 
Sbjct: 8   AKYRPQCFAEVAGQEALKAVLS---RAAKEDRIAPAY-LFSGTRGVGKTTLARILAKAVN 63

Query: 80  VNFRSTSGPVIAKAGDLA--ALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDF 132
                   P             +T     DV+ ID      I     + E+I Y  +E  
Sbjct: 64  CEH----APTAEPCNQCRHCRQITAGAAVDVVEIDAASNRGIDDARRLKEDIGYAPLECR 119

Query: 133 QLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
               ++ E             ++++    R T I ATT        +  R          
Sbjct: 120 YKVFIIDEAHMLTREAFNALLKTLEEPPGRVTFILATTEPHKFPATIISRCQHYAFKRLG 179

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
           + E L+  ++      G+   D A   IA R  G+ R +  LL
Sbjct: 180 QAE-LEAHLKVVLGKEGVDCEDAAVSLIARRGAGSVRDSMSLL 221


>gi|311070666|ref|YP_003975589.1| DNA polymerase III subunits gamma and tau [Bacillus atrophaeus
           1942]
 gi|310871183|gb|ADP34658.1| DNA polymerase III subunits gamma and tau [Bacillus atrophaeus
           1942]
          Length = 564

 Score = 69.7 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 63/321 (19%), Positives = 117/321 (36%), Gaps = 46/321 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RP+  E+  GQ      L    + A  + +     LF GP G GKT+ A++ ++
Sbjct: 5   ALYRVFRPQRFEDVVGQEHITKTL----QNALLKKKFSHAYLFSGPRGTGKTSAAKIFSK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAAL--LTNLEDRDVLFID-----EIHRLSIIVEEILYPAM 129
            +         PV     + AA   +TN    DV+ ID      +  +  I +++ +   
Sbjct: 61  AVNCEH----APVEEPCNNCAACKGITNGSISDVIEIDAASNNGVDEIRDIRDKVKFAPS 116

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                  ++ E             ++++        I ATT    +   +  R       
Sbjct: 117 AVTYKVYIIDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLTIISRCQ-RFDF 175

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
                + +   +++  +   L V + A   IA  + G  R A  LL +   F       +
Sbjct: 176 KRITPQAIVGRMKKIVEAEQLKVEEGALDIIASAADGGMRDALSLLDQAVSF-------S 228

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVG--IETISAGLSEPRDA--- 295
                 D ALL           +   Y+  +A++     V   +ET++  L + +DA   
Sbjct: 229 GDELTVDDALLITGA-------VSQHYIGKLAQSLHEKQVSGALETLNELLQQGKDAAKL 281

Query: 296 IEDLIEPYMIQQGFIQRTPRG 316
           IED+I  +  +   + +T  G
Sbjct: 282 IEDMIFYF--RDMLLYKTAPG 300


>gi|257790371|ref|YP_003180977.1| DNA polymerase III, subunits gamma and tau [Eggerthella lenta DSM
           2243]
 gi|257474268|gb|ACV54588.1| DNA polymerase III, subunits gamma and tau [Eggerthella lenta DSM
           2243]
          Length = 735

 Score = 69.7 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 52/236 (22%), Positives = 82/236 (34%), Gaps = 22/236 (9%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +A     RP+  E+  GQ      +K  IE  K         LF GP G GKTT A+++A
Sbjct: 3   EALYRKYRPQIFEDVVGQEHIERTIKNAIEQDKVSHAY----LFTGPRGTGKTTTARLLA 58

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI--IVEEIL----YPAM 129
           + L         P      D   ++ N E  DV  +D   R  +  + EEI+    +   
Sbjct: 59  KALLCEC--GPTPEPDGTCDDCVMIANGEHPDVYELDAASRTGVENVREEIIGRVQFAPT 116

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                  ++ E             ++++   S    I ATT    +   +  R       
Sbjct: 117 RGRYKIYIIDEVHMLSTAAFNALLKTLEEPPSHVVFILATTDPQKVPETIHSRCQ-RFDF 175

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
                E + + +        +    EA   IA R+ G  R A   L ++  F E  
Sbjct: 176 RRISAESIVSRLGAICVSEDVEFEGEALDLIAHRAEGGMRNALTSLEQLIAFGEGK 231


>gi|226292668|gb|EEH48088.1| replication factor C subunit 2 [Paracoccidioides brasiliensis Pb18]
          Length = 395

 Score = 69.7 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 44/242 (18%), Positives = 80/242 (33%), Gaps = 53/242 (21%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+TL++   Q    + L+  ++A+      L H+LF GPPG GKT+    +++
Sbjct: 36  PWVEKYRPKTLDDVASQEHTITVLQRTLQAS-----NLPHMLFYGPPGTGKTSTILALSK 90

Query: 77  -------------ELGVNFRSTSGPVIAKAGDLAALLTNL--------------EDRDVL 109
                        EL  +       V  K  D A +  +                   ++
Sbjct: 91  SLFGPQLYRSRILELNASDERGISIVREKIKDFARMQLSHPPVSDTAYCEKYPCPPFKII 150

Query: 110 FIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA-TTRVGLLTN 168
            +DE   ++   +  L   ME +                   SR T        V  + +
Sbjct: 151 ILDEADSMTQDAQSALRRTMERY-------------------SRITRFCLVCNYVTRIID 191

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
           PL  R     R    +     + ++  A++  L + D     +   S G  R A   ++ 
Sbjct: 192 PLASRCS-KFRFKALDGSAAGSRLEEIARVEKLRLADGCIETLIRCSEGDLRRAITFMQS 250

Query: 229 VR 230
             
Sbjct: 251 AA 252


>gi|195118794|ref|XP_002003921.1| GI18168 [Drosophila mojavensis]
 gi|193914496|gb|EDW13363.1| GI18168 [Drosophila mojavensis]
          Length = 332

 Score = 69.7 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 38/238 (15%), Positives = 71/238 (29%), Gaps = 38/238 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP  L++     E  S +  FI       + L H+LF GPPG GKT+     AR
Sbjct: 12  PWVEKYRPNCLDDLISHEEIISTINRFI-----NQKQLPHLLFYGPPGTGKTSTILACAR 66

Query: 77  ------ELGVNFRSTSGPVIAKAGDLA-ALLTNLEDRDVLF-------IDEIHRLSIIVE 122
                          +       G +   +L     R +         +DE   ++   +
Sbjct: 67  QLYSPAHFKSMVLELNASDDRGIGIVRGQILNFASTRTIFCGTFKLIILDEADAMTNDAQ 126

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             L   +E +                              +  +   LQ R     R   
Sbjct: 127 NALRRIIEKYT------------------ENVRFCIICNYLSKIIPALQSRC-TRFRFAP 167

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
              E +   + +  +   + +TD+    +   ++G  R    +L+      +V +   
Sbjct: 168 LSPEQMMPRLNKVVEEENVNITDDGKKALLTLAKGDMRKVLNVLQSTSMAFDVVNEDN 225


>gi|302185103|ref|ZP_07261776.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv.
           syringae 642]
          Length = 736

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 68/329 (20%), Positives = 98/329 (29%), Gaps = 67/329 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPR+  E  GQ      LK  I A    ++ L H  LF G  G+GKTT+A+++A+ L   
Sbjct: 11  RPRSFREMVGQAHV---LKALINA--LDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNCE 65

Query: 82  FRSTS------------------------GPVIAKAGDLAALLTNLE------DRDVLFI 111
              TS                             K  D   LL N++         V  I
Sbjct: 66  TGITSTPCGTCSVCKEIDEGRFVDLIEIDAASRTKVEDTRELLDNVQYAPSRGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         I ATT    L   + 
Sbjct: 126 DEVHMLSSHSFNALLKTLEE------------------PPPYVKFILATTDPQKLPATIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L     E +   +     +  +   D+A   +   + G+ R A  L  +   
Sbjct: 168 SRC-LQFSLKNMTPERVVEHLTHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAIA 226

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLD-------LRYLTMIARNFGGGPVGIET 284
           F E              A+L        FD L           L  +      GP     
Sbjct: 227 FGEGK-----VMAADVRAMLGTLDHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGV 281

Query: 285 ISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
           +S  L+           P  +  G   R 
Sbjct: 282 LSEILNVLHRVAIAQALPEGVDNGHGDRD 310


>gi|297616247|ref|YP_003701406.1| DNA polymerase III subunits gamma and tau [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297144084|gb|ADI00841.1| DNA polymerase III, subunits gamma and tau [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 517

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 45/246 (18%), Positives = 85/246 (34%), Gaps = 53/246 (21%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A    LRP+  +E  GQ +    L+  ++  +         LF GP G GKT++A+++A+
Sbjct: 19  ALYRSLRPQRFDEVVGQEQTVRALRNAVQQGRVSHAY----LFCGPRGTGKTSVAKILAK 74

Query: 77  ELGV---------------------------NFRSTSGPVIAKAGDLAALLTNL---EDR 106
            +                                + S   I +  DL   +  +      
Sbjct: 75  AVNCVEPVDGEPCNRCASCVDIASGSFMDVIEIDAASNRGIDEIRDLREKVRMMPAQGKT 134

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
            V  IDE+H L+      L   +E+    ++                   + ATT    +
Sbjct: 135 KVYIIDEVHMLTTEAFNALLKTLEEPPESVV------------------FVLATTEPQRI 176

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
              +  R          + E L+  ++  A+  G+   ++A   IA R+ G+ R    +L
Sbjct: 177 PATILSRCQRYNFRRLSQTEILER-LKTVAQTQGIESEEKALEVIARRATGSMRDGLSIL 235

Query: 227 RRVRDF 232
            +   +
Sbjct: 236 DQCLAY 241


>gi|258593674|emb|CBE70015.1| DNA polymerase III, subunits gamma and tau [NC10 bacterium 'Dutch
           sediment']
          Length = 601

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 58/251 (23%), Positives = 89/251 (35%), Gaps = 53/251 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  +E  GQ      LK  I    A+      +LF GP G+GKTT A+++A+ L    
Sbjct: 11  RPQNFDEVVGQRPVTQTLKNAI----AKDRVAHALLFAGPRGVGKTTTARILAKALNCER 66

Query: 83  RSTSGP---------------------------VIAKAGDLAALLTNLEDRD---VLFID 112
             TS P                            I +  +L  ++     RD   V+ ID
Sbjct: 67  GRTSEPCSECASCNAIATGRSVDCLEIDGASNRGIDEVRELREIVRYAPSRDKCKVIIID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H L+      L   +E+                         I ATT    +   +  
Sbjct: 127 EVHMLTEPAFNALLKTLEE------------------PPPGVIFILATTHAHKIPPTILS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R          + E L   +Q+ A   G AV+D A   IA  + G+ R A  LL +   +
Sbjct: 169 RCQRHDFRRLGQTEILPR-LQQIACEEGAAVSDGAMKAIARAAEGSLRDAQSLLDQAIAY 227

Query: 233 AEVAHAKTITR 243
           +  A ++    
Sbjct: 228 SGDAVSEEDVA 238


>gi|317153154|ref|YP_004121202.1| DNA polymerase III subunits gamma and tau [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316943405|gb|ADU62456.1| DNA polymerase III, subunits gamma and tau [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 654

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 50/251 (19%), Positives = 82/251 (32%), Gaps = 25/251 (9%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +  RP+T  E  GQ    + L    E    +       LF G  G+GKTTLA++ A+ L 
Sbjct: 8   AKYRPQTFAEVAGQEAIKAILSRAAE----QNRIAPAYLFSGTRGVGKTTLARIFAKALN 63

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHR-----LSIIVEEILYPAMEDFQL 134
               + +     +  +   +   +   DV+ ID            + E+I Y  +E    
Sbjct: 64  CAN-APTAEPCNQCSNCRQITAGVAV-DVIEIDGASNRGIDDARRLKEDIGYAPVECRYK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             ++ E             ++++    R T I ATT        +  R            
Sbjct: 122 VFIIDEAHMLTKEAFNALLKTLEEPPPRATFIMATTEPHKFPATIVSRCQ-HYTFKMLSQ 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           + L   +++      L     A   IA R  G+ R +  LL      A       +  E 
Sbjct: 181 QALVEHLEKLMNAEALQYEPGALQIIAKRGAGSVRDSMSLL----GQALAIGEDVLREES 236

Query: 246 ADAALLRLAID 256
               L     D
Sbjct: 237 VRGFLGLAGQD 247


>gi|254414978|ref|ZP_05028741.1| DNA polymerase III, subunits gamma and tau, putative [Microcoleus
           chthonoplastes PCC 7420]
 gi|196178125|gb|EDX73126.1| DNA polymerase III, subunits gamma and tau, putative [Microcoleus
           chthonoplastes PCC 7420]
          Length = 700

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 64/337 (18%), Positives = 104/337 (30%), Gaps = 47/337 (13%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +      RP+T  +  GQ      L   I   K         LF GP G GKT+ A+++A
Sbjct: 4   EPLHHKYRPQTFADLVGQEAIAQTLTNAIRQEKVA----PAYLFCGPRGTGKTSSARILA 59

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAME 130
           + L         P      D+   +      D+  ID      +  +  I+E   +  ++
Sbjct: 60  KSLNCLTTDKPTPQPCGTCDVCRTIAQGTALDITEIDAASNTGVDNIREIIERAQFAPVQ 119

Query: 131 DFQLDLMVGEGPSARSVKIN---------LSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
                 +V E     S   N               + ATT    +   +  R        
Sbjct: 120 CRYKVYVVDECHMLSSAAFNALLKTLEEPPKHVVFVLATTDPQRVLPTIISRCQ-RFDFR 178

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
              +  +   +Q  A    + +T EA   +A  ++G  R A  LL ++   A     + I
Sbjct: 179 RIPLAAMVKHLQYIATKESINITTEAITLVAQVAQGGLRDAESLLDQLSLLAGEITVECI 238

Query: 242 ------TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDA 295
                   E    AL +   D           L         G            EP   
Sbjct: 239 WDLVGAVPERDLLALSQAITDNHA-----QAVLDCCRNLMDRG-----------REPLVV 282

Query: 296 IEDLIEPYMIQQGFIQRTPRGRL----LMPIAWQHLG 328
           +++L   Y  +   I +T   R     + P  W+ LG
Sbjct: 283 LQNLAGFY--RDLLIAKTAPSRQDLVAVTPPTWKQLG 317


>gi|255528527|ref|ZP_05395309.1| Sigma 54 interacting domain protein [Clostridium carboxidivorans
           P7]
 gi|255507785|gb|EET84243.1| Sigma 54 interacting domain protein [Clostridium carboxidivorans
           P7]
          Length = 331

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 61/297 (20%), Positives = 96/297 (32%), Gaps = 58/297 (19%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M + + L  RN+   +      RP    E  GQ +    L+     A        HV+  
Sbjct: 42  MENLKRL--RNIKLTEPLTEKSRPSDFNEIIGQEKGIKALQ-----AALCGPNPQHVIIY 94

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------------- 106
           GPPG+GKT  A++V +       S    V +K  ++ A     +DR              
Sbjct: 95  GPPGVGKTAAARLVLKYAKKKSYSPFTEV-SKFIEIDATTIRFDDRGIADPLIGSVHDPI 153

Query: 107 -------------------------DVLFIDEIHRLSIIVEEILYPAMEDFQLDL----M 137
                                     +LFIDEI  L  I    L   +ED ++ L     
Sbjct: 154 YQGAGPLGVAGIPQPKPGAVTKAHGGILFIDEIGELHHIEMNKLLKVLEDRKVFLDSSYY 213

Query: 138 VGEGPSARSVKINL------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
                +  +   ++      + F L+ ATTR      P      + +       E++KTI
Sbjct: 214 NSSDTNMPTYIKDIFENGLPADFRLVGATTRNPEEITPALRSRCVEVFFRALNPEEIKTI 273

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
                   G  + D+A   +        R A  L++     A       IT E  + 
Sbjct: 274 ALNAVNKIGFNIDDKACSMVGKYCEN-GRDAVNLIQLASGIALNEDRNNITIEDVEW 329


>gi|229542243|ref|ZP_04431303.1| DNA polymerase III, subunits gamma and tau [Bacillus coagulans
           36D1]
 gi|229326663|gb|EEN92338.1| DNA polymerase III, subunits gamma and tau [Bacillus coagulans
           36D1]
          Length = 563

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 47/244 (19%), Positives = 75/244 (30%), Gaps = 53/244 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+   +  GQ      L    + A  + +     LF GP G GKT+ A+++A+ +    
Sbjct: 11  RPQRFADVVGQEHVTKTL----QHALLQQKTTHAYLFSGPRGTGKTSAAKILAKAVNCEH 66

Query: 83  ------------------------RSTSGPVIAKAGDLAALLTNLE------DRDVLFID 112
                                               D+  +   ++         V  ID
Sbjct: 67  APTGEPCNECAVCRGITDGTIPDVIEIDAASNTGVDDIRDIRDKVKYAPSVVKYKVYIID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LSI     L   +E+                         I ATT    +   +  
Sbjct: 127 EVHMLSIGAFNALLKTLEE------------------PPKHVIFILATTEPHKIPLTIVS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R            +  K  +   A  TG+A  ++A   IA  + G  R A  LL +   F
Sbjct: 169 RCQRFDFKRITSRDIFKR-LAYIAGETGIAYDEQALNIIAHAAEGGMRDALSLLDQAVSF 227

Query: 233 AEVA 236
           +E  
Sbjct: 228 SEGK 231


>gi|29347020|ref|NP_810523.1| DNA polymerase III subunit gamma/tau [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253572655|ref|ZP_04850056.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. 1_1_6]
 gi|29338918|gb|AAO76717.1| DNA polymerase III subunit gamma/tau [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|251837787|gb|EES65877.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. 1_1_6]
          Length = 619

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 76/228 (33%), Gaps = 20/228 (8%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T E   GQ    + LK  I   K         LF GP G+GKTT A++ A+ +
Sbjct: 8   ARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAY----LFCGPRGVGKTTCARIFAKTI 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL-----YPAMEDFQ 133
                +T G    +     A        ++  +D     S+     L      P      
Sbjct: 64  NCMTPTTDGEACNECESCVA-FNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKY 122

Query: 134 LDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
              ++ E             ++++        I ATT    +   +  R  I    N   
Sbjct: 123 KVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQI-YDFNRIS 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           +ED    +   A    +    EA   IAM++ G  R A  +  +V  F
Sbjct: 182 VEDTVNHLSYVAAKENITAEPEALNVIAMKADGGMRDALSIFDQVVSF 229


>gi|253317220|ref|ZP_04840433.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
          Length = 361

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 48/262 (18%), Positives = 91/262 (34%), Gaps = 40/262 (15%)

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
                    V     D+  ++   +   + +L +DEIHRL    ++ L P +E+ ++ L+
Sbjct: 2   QYKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKIVLI 61

Query: 138 --VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
                 P         SR  +            PL D           E +      + G
Sbjct: 62  GATTSNPYHAINPAIRSRAQIFELY--------PLNDEDVRQALTRAIEDD------ENG 107

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK--TITREIADAALLRL 253
            K     + ++A    + +S+G  R A   L      A+        +T + A   L + 
Sbjct: 108 LKTYQPKIDEDAMTYFSTQSQGDVRSALNALELAVLSADNDKDGYRHVTLQDAKDCLQKG 167

Query: 254 AI--DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
           A   DK G    D+  ++   ++  G  V              A+  L    +I+ G + 
Sbjct: 168 AFVSDKDGDMHYDV--MSAFQKSIRGSDV------------NAALHYLAR--LIEAGDLP 211

Query: 312 RTPRGRLLMPIAWQHLGIDIPH 333
                R L+ I+++ +G+  P+
Sbjct: 212 TIV--RRLLVISYEDIGLASPN 231


>gi|312621630|ref|YP_004023243.1| DNA polymerase III subunits gamma and tau [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312202097|gb|ADQ45424.1| DNA polymerase III, subunits gamma and tau [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 534

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 89/234 (38%), Gaps = 21/234 (8%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP+  E+   Q      LK  I+  K         +F GP G GKTT A++++R
Sbjct: 4   ALYRKYRPKVFEDVVAQEHITRTLKNQIKQDKVAHAY----IFCGPRGTGKTTTAKIMSR 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII-----VEEILYPAMED 131
            +         P   +     ++L   +  DVL ID     S+       +E+ YP    
Sbjct: 60  AVNCLNPKDGNP-CNECEICRSILDE-KTLDVLEIDAASNTSVNDVRQIRDEVRYPPSVC 117

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
            +   ++ E             ++++        I ATT +  +   +  R         
Sbjct: 118 KKKVYIIDEVHMLSTGAFNALLKTLEEPPEHALFILATTDIQKVPATILSRCQ-RFDFKR 176

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
             ++D+   +++  ++  +++ D A   I+ ++ G  R A  +L R  + ++  
Sbjct: 177 ISVKDIYERLKKIVQMENISIDDNALYLISQKAEGALRDALTILERCINTSDEH 230


>gi|240047507|ref|YP_002960895.1| DNA polymerase III subunits gamma and tau [Mycoplasma conjunctivae
           HRC/581]
 gi|239985079|emb|CAT05072.1| DNA polymerase III gamma and tau subunit [Mycoplasma conjunctivae]
          Length = 665

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 51/308 (16%), Positives = 91/308 (29%), Gaps = 59/308 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP+T  +  GQ     +LK  I +     +     LF G  G GKT+LA++ A 
Sbjct: 7   AWYRKYRPQTFNDVVGQELIVQSLKNIITS----QQYFHAYLFAGSRGTGKTSLAKIFAN 62

Query: 77  ELGVNFRSTS---------------------GPVIAKAGDLAALLTNL------EDRDVL 109
            L    +                                ++  L+ N+          V 
Sbjct: 63  TLNCQHKRDLLIPCETCIANINNSLDIIEIDAASNNGVKEIRELIENVANLPQNSPYKVY 122

Query: 110 FIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
            +DE H L+          +E+                         I ATT V  +   
Sbjct: 123 IMDEAHMLTTSAFNAFLKTLEE------------------PPKHVIFILATTEVHKIPLT 164

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           +  R          +I+D+   ++   +   ++    A   +A  S G+ R A  +L +V
Sbjct: 165 ILSRLQ-RFNFVKVQIQDVIKRLEFVLQKEAISYEIGALEMVAKLSEGSLRDALSILEQV 223

Query: 230 RDFAEVAHAKTITREIADAALLRLAIDKMGFDQL---DLR----YLTMIARNFGGGPVGI 282
             F        ++       L          + L   D++     L  I        + +
Sbjct: 224 STFG--NGKLNLSDVETLFGLTSNEKIVEFINSLYAEDIKESLAILKQIFEQGKQTKLFL 281

Query: 283 ETISAGLS 290
            +I   + 
Sbjct: 282 NSILNLIK 289


>gi|71408237|ref|XP_806535.1| replication factor C, subunit 2 [Trypanosoma cruzi strain CL
           Brener]
 gi|70870309|gb|EAN84684.1| replication factor C, subunit 2, putative [Trypanosoma cruzi]
          Length = 347

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 62/273 (22%), Positives = 99/273 (36%), Gaps = 29/273 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP TL E   Q EA   L+    A+   + ++ H LF GPPG GKTT    VAR
Sbjct: 20  PWVEKYRPMTLSEVKSQEEAVCALR----ASLQPSASMPHFLFHGPPGTGKTTAILAVAR 75

Query: 77  E------LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           E      +    R  +         +   +       V  +   H++    +    P  +
Sbjct: 76  ELFGPDYVHSRVREMNASDDRGIQVIREKVKVFAQTAVGSVG--HKVQSDGQVYPVPQFK 133

Query: 131 DFQLDLMVGEGPSA----RSVKINLSRFT-LIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
              LD      P A    R +  + S  T        V  + +P+  R     R      
Sbjct: 134 LIILDEADALLPDAQAALRRMMEDFSDVTRFCILCNYVSRIIDPIASRCA-KYRFKPLVR 192

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           E L   ++  AK+  + V+D +   +   S G  R A   L+    +A+ AH   +T+E 
Sbjct: 193 ETLYDRIREIAKMEEITVSDASLEALDRVSGGDLRSAIMYLQ----YAQKAHGSDLTKEN 248

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIA-RNFGG 277
               L       M   +   +YL  +  ++F G
Sbjct: 249 F---LEVSGSVPMELLE---KYLKALVTKDFDG 275


>gi|116617405|ref|YP_817776.1| DNA polymerase III, gamma/tau subunit [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
 gi|116096252|gb|ABJ61403.1| DNA polymerase III, gamma/tau subunit [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
          Length = 575

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 47/237 (19%), Positives = 80/237 (33%), Gaps = 40/237 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RPR+ ++  GQ      LK  I A +    A    LF GP G GKT+ A++ AR
Sbjct: 7   ALYRVYRPRSFDDMVGQKIITQTLKNAI-ATQQTGHAY---LFSGPRGTGKTSAAKIFAR 62

Query: 77  ELG-----------VNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSI 119
           E+             +             ++  +           +  +  IDE+H LS 
Sbjct: 63  EVNGIAPETDDSQIPDIIEIDAASNNGVDEIRNIRDGANYAPIESEYKIYIIDEVHMLSS 122

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
                L   +E+                    +    I ATT    +   +  R      
Sbjct: 123 GAFNALLKTLEE------------------PPANVKFILATTEPQKIPATILSRTQ-RFE 163

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
               + + ++  +    +  G++  D+A   IA  + G  R A  +L +V  F    
Sbjct: 164 FKRIDNDTIQARMAEILQKEGISFDDDALHIIANVAEGGMRDALSILDQVLAFGADH 220


>gi|67525023|ref|XP_660573.1| hypothetical protein AN2969.2 [Aspergillus nidulans FGSC A4]
 gi|40744364|gb|EAA63540.1| hypothetical protein AN2969.2 [Aspergillus nidulans FGSC A4]
          Length = 754

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 52/274 (18%), Positives = 86/274 (31%), Gaps = 55/274 (20%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
              S+    +   RP+TL++   Q           +AA      L H+LF GPPG GKT+
Sbjct: 394 EEQSRLQPWVEKYRPKTLDDVAAQDHTTKTWARTNQAALQ----LPHMLFYGPPGTGKTS 449

Query: 70  LAQVVAR-------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDR---------- 106
               +A+             EL  +     G V  K    A +  +              
Sbjct: 450 TILALAKSLFGPALYRSRILELNASDERGIGIVREKVKGFARVQLSHPTGLDAEYFEKYP 509

Query: 107 ----DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA-TT 161
                ++ +DE   ++   +  L   ME +                   SR T       
Sbjct: 510 CPPFKIIILDEADSMTQDAQSALRRTMEQY-------------------SRITRFCLVCN 550

Query: 162 RVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRI 221
            V  +  PL  R     R    +       + + A+L  L++ +    ++   S G  R 
Sbjct: 551 YVTRIIEPLASRCS-KFRFKPLDNSAAGDRLAQIAQLEKLSLENGVVDKLISCSDGDLRR 609

Query: 222 AGRLLR---RVRDFAEVAHAKTITREIADAALLR 252
           A   L+   R+   A+ A       E+ D     
Sbjct: 610 AITYLQSAARLVGAAKAAKDGDEDEEMKDQGSDM 643


>gi|300744279|ref|ZP_07073298.1| DNA polymerase III, subunits gamma and tau [Rothia dentocariosa
           M567]
 gi|300380004|gb|EFJ76568.1| DNA polymerase III, subunits gamma and tau [Rothia dentocariosa
           M567]
          Length = 957

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 57/307 (18%), Positives = 96/307 (31%), Gaps = 40/307 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T  E  GQ      L   +   +         LF GP G GKTT A+++AR
Sbjct: 4   ALYRRYRPETFAEVIGQEHVTEPLITALTNNRVNHAY----LFSGPRGCGKTTSARILAR 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR--DVLFID-----EIHRLSIIVEEILYPAM 129
              +N      P      D    L+       DV+ +D      +     + E      +
Sbjct: 60  --CLNCAQGPTPTPCGVCDSCRELSRDGGGSLDVIEMDAASHGGVDHARDLRERATLAPV 117

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            D     ++ E             + V+        I ATT    +   ++ R       
Sbjct: 118 RDRYKIFIIDEAHMVTREGFNALLKIVEEPPEHIKFIFATTEPNKVLGTIRSR-THHYPF 176

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
                E L   +++      + V       +     G+ R +  +L ++     +A A T
Sbjct: 177 RLVPPEVLLPYLEKLCSEENVPVESGVLQLVIRAGGGSVRDSLSILDQL-----IAGANT 231

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV-----GIETISAGLSEPRDA 295
            +    D A+  L            + L  +   F           +  + A   +PR  
Sbjct: 232 ESGISYDRAVALLGY-------THAQLLDNVIDAFSAQDAPSLFEAVSRVVATGQDPRRF 284

Query: 296 IEDLIEP 302
           +EDL+E 
Sbjct: 285 VEDLLER 291


>gi|259048077|ref|ZP_05738478.1| DNA polymerase III, gamma and tau subunits [Granulicatella adiacens
           ATCC 49175]
 gi|259035138|gb|EEW36393.1| DNA polymerase III, gamma and tau subunits [Granulicatella adiacens
           ATCC 49175]
          Length = 572

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 81/231 (35%), Gaps = 27/231 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T ++  GQ      LK  I   K         LF GP G GKT+ A+V A+ +    
Sbjct: 11  RPQTFDDMVGQSAVTHTLKNAISNQKTSHAY----LFTGPRGTGKTSAAKVFAKAINCPN 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
           +    P      ++   +TN    DV+ ID      +  +  I ++  Y   +      +
Sbjct: 67  QKNGEPCNEC--EICKGITNGTIGDVIEIDAASNNGVEEIRDIRDKARYAPTQAEYKIYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++    +   I ATT    +   +  R            E  
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPQKVIFILATTEPHKIPATIISRTQRFDFRRITSQE-- 182

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTP---RIAGRLLRRVRDFAEVA 236
             I+ R A +         A  +++ +R      R A  LL ++  F +  
Sbjct: 183 --IIDRLAYILDQEGIPYEADALSVVARCANGGMRDALSLLDQMISFGDGK 231


>gi|325833707|ref|ZP_08166122.1| DNA polymerase III, subunit gamma and tau [Eggerthella sp. HGA1]
 gi|325485247|gb|EGC87717.1| DNA polymerase III, subunit gamma and tau [Eggerthella sp. HGA1]
          Length = 743

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 52/236 (22%), Positives = 82/236 (34%), Gaps = 22/236 (9%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +A     RP+  E+  GQ      +K  IE  K         LF GP G GKTT A+++A
Sbjct: 3   EALYRKYRPQIFEDVVGQEHIERTIKNAIEQDKVSHAY----LFTGPRGTGKTTTARLLA 58

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI--IVEEIL----YPAM 129
           + L         P      D   ++ N E  DV  +D   R  +  + EEI+    +   
Sbjct: 59  KALLCEC--GPTPEPDGTCDDCVMIANGEHPDVYELDAASRTGVENVREEIIGRVQFAPT 116

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                  ++ E             ++++   S    I ATT    +   +  R       
Sbjct: 117 RGRYKIYIIDEVHMLSTAAFNALLKTLEEPPSHVVFILATTDPQKVPETIHSRCQ-RFDF 175

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
                E + + +        +    EA   IA R+ G  R A   L ++  F E  
Sbjct: 176 RRISAESIVSRLGAICVSEDVEFEGEALDLIAHRAEGGMRNALTSLEQLIAFGEGK 231


>gi|50304813|ref|XP_452362.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49641495|emb|CAH01213.1| KLLA0C03718p [Kluyveromyces lactis]
          Length = 320

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 50/277 (18%), Positives = 89/277 (32%), Gaps = 39/277 (14%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           +S     E   +   RP  L++  G  +    L+       A    + H++  G PG+GK
Sbjct: 1   MSYATKLELPWVEKYRPHLLKDIVGNEDTVQRLQTI-----AADGNMPHMIISGLPGIGK 55

Query: 68  TTLAQVVARE-----LGVNFRSTSGPVIAKAGDLAALLTN---------LEDRDVLFIDE 113
           TT    +A E             +         +   + +              ++ +DE
Sbjct: 56  TTSIHCLAHELLGDAYSQAVLELNASDDRGIEVVRNQIKHFAQKKCTLPAGKHKIIILDE 115

Query: 114 IHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
              ++   ++ L   ME +                 N +RF    A  +   +  PLQ R
Sbjct: 116 ADSMTSGAQQALRRTMELYS----------------NTTRFAF--ACNQSNKIIEPLQSR 157

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA-GRLLRRVRDF 232
             I       + + LK +++   KL  +  T++    I   + G  R A   L   V  F
Sbjct: 158 CAILRYSKLTDEQVLKRLLE-IIKLEDVQYTNDGLEAIIFTAEGDMRQAINNLQSTVAGF 216

Query: 233 AEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLT 269
             V          +   L+   +   G     L+YL 
Sbjct: 217 GLVNGENVFQIVDSPHPLIVKRMLLSGSLDESLQYLK 253


>gi|300362311|ref|ZP_07058487.1| DNA polymerase III, gamma/tau subunit DnaX [Lactobacillus gasseri
           JV-V03]
 gi|300353302|gb|EFJ69174.1| DNA polymerase III, gamma/tau subunit DnaX [Lactobacillus gasseri
           JV-V03]
          Length = 602

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 80/228 (35%), Gaps = 21/228 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPRT +   GQ      LK  I     R +     LF GP G GKT+ A++ A+ L    
Sbjct: 11  RPRTFDGVVGQTAITDTLKNAI----KRGKISHAFLFAGPRGTGKTSCAKIFAKALNCTN 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P       LAA    +   D++ ID      +  +  I +++ Y   +      +
Sbjct: 67  LQDGEPCNECENCLAADRGTM--NDIIEIDAASNNGVDEIRDIRDKVKYAPTQGKYKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT +  +   +  R          + + +
Sbjct: 125 IDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRIDQHDLI 184

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
              +        +   ++A   IA  + G  R +  +L ++  + +  
Sbjct: 185 AR-MTYILGQEKIGFEEKALEVIAQVADGGMRDSLSILDQILSYDQDK 231


>gi|209876285|ref|XP_002139585.1| replication factor C subunit 2 [Cryptosporidium muris RN66]
 gi|209555191|gb|EEA05236.1| replication factor C subunit 2, putative [Cryptosporidium muris
           RN66]
          Length = 323

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 78/228 (34%), Gaps = 38/228 (16%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
            I   RP+ L++  G  E    LKV      A+   + ++L  GPPG GKTT    +A E
Sbjct: 6   WIEKYRPKILDDMVGNEEVLIRLKVL-----AKQGNMPNLLLSGPPGTGKTTSIHCLAAE 60

Query: 78  -----LGVNFRSTSGPVIAKAGDLAALLTN---------LEDRDVLFIDEIHRLSIIVEE 123
                        +         +   + +              ++ +DE+  ++   ++
Sbjct: 61  LLGPKFNRAVLELNASDDRGIDVVRDRIKSFAKEKIDLPFGRHKIIILDEVDSMTDTAQQ 120

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
            L   ME +                 + +RF    A  +   +  P+Q R  I IR +  
Sbjct: 121 ALRRLMEVYS----------------DSTRF--ALACNQSTKIIEPIQSRCAI-IRYSKL 161

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
             E ++  +    K   +   D     +   + G  RIA   L+   +
Sbjct: 162 SDEQIRERLFDIIKFENIPYIDSGIETLIFTADGDMRIAINNLQATYN 209


>gi|330954421|gb|EGH54681.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae Cit
           7]
          Length = 736

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 68/329 (20%), Positives = 98/329 (29%), Gaps = 67/329 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPR+  E  GQ      LK  I A    ++ L H  LF G  G+GKTT+A+++A+ L   
Sbjct: 11  RPRSFREMVGQAHV---LKALINA--LDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNCE 65

Query: 82  FRSTS------------------------GPVIAKAGDLAALLTNLE------DRDVLFI 111
              TS                             K  D   LL N++         V  I
Sbjct: 66  TGITSTPCGTCSVCKEIDEGRFVDLIEIDAASRTKVEDTRELLDNVQYAPSRGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         I ATT    L   + 
Sbjct: 126 DEVHMLSSHSFNALLKTLEE------------------PPPYVKFILATTDPQKLPATIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L     E +   +     +  +   D+A   +   + G+ R A  L  +   
Sbjct: 168 SRC-LQFSLKNMTPERVVEHLTHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAIA 226

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLD-------LRYLTMIARNFGGGPVGIET 284
           F E              A+L        FD L           L  +      GP     
Sbjct: 227 FGEGK-----VMAADVRAMLGTLDHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGV 281

Query: 285 ISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
           +S  L+           P  +  G   R 
Sbjct: 282 LSEILNVLHRVAIAQALPEGVDNGHGDRD 310


>gi|66045069|ref|YP_234910.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv.
           syringae B728a]
 gi|63255776|gb|AAY36872.1| DNA-directed DNA polymerase [Pseudomonas syringae pv. syringae
           B728a]
          Length = 736

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 68/329 (20%), Positives = 98/329 (29%), Gaps = 67/329 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPR+  E  GQ      LK  I A    ++ L H  LF G  G+GKTT+A+++A+ L   
Sbjct: 11  RPRSFREMVGQAHV---LKALINA--LDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNCE 65

Query: 82  FRSTS------------------------GPVIAKAGDLAALLTNLE------DRDVLFI 111
              TS                             K  D   LL N++         V  I
Sbjct: 66  TGITSTPCGTCSVCKEIDEGRFVDLIEIDAASRTKVEDTRELLDNVQYAPSRGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         I ATT    L   + 
Sbjct: 126 DEVHMLSSHSFNALLKTLEE------------------PPPYVKFILATTDPQKLPATIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L     E +   +     +  +   D+A   +   + G+ R A  L  +   
Sbjct: 168 SRC-LQFSLKNMTPERVVEHLTHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAIA 226

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLD-------LRYLTMIARNFGGGPVGIET 284
           F E              A+L        FD L           L  +      GP     
Sbjct: 227 FGEGK-----VMAADVRAMLGTLDHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGV 281

Query: 285 ISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
           +S  L+           P  +  G   R 
Sbjct: 282 LSEILNVLHRVAIAQALPEGVDNGHGDRD 310


>gi|19114033|ref|NP_593121.1| DNA replication factor C complex subunit Rfc4 (predicted)
           [Schizosaccharomyces pombe 972h-]
 gi|30913230|sp|O94449|RFC4_SCHPO RecName: Full=Replication factor C subunit 4; Short=Replication
           factor C4
 gi|4106657|emb|CAA22597.1| DNA replication factor C complex subunit Rfc4 (predicted)
           [Schizosaccharomyces pombe]
          Length = 342

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 49/253 (19%), Positives = 86/253 (33%), Gaps = 39/253 (15%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           + +V+ E   +   RP  L++  G  E    LKV      A+   + H++  G PG+GKT
Sbjct: 14  NNSVAYELPWVEKYRPIVLDDIVGNEETIDRLKVI-----AKEGNMPHLVISGMPGIGKT 68

Query: 69  TLAQVVAR------------ELGVNFRSTSGPVIAKAGDLA--ALLTNLEDRDVLFIDEI 114
           T    +A             EL  +       V  +    A   ++       ++ +DE 
Sbjct: 69  TSILCLAHALLGPAYKEGVLELNASDERGIDVVRNRIKAFAQKKVILPPGRHKIIILDEA 128

Query: 115 HRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRF 174
             ++   ++ L   ME +                 N +RF    A  +   +  P+Q R 
Sbjct: 129 DSMTAGAQQALRRTMEIYS----------------NTTRF--ALACNQSNKIIEPIQSRC 170

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA-GRLLRRVRDFA 233
            I       + + L+ ++    K   +  TD+    + M + G  R A   L   V  F 
Sbjct: 171 AILRYSRLTDQQVLQRLLN-ICKAEKVNYTDDGLAALIMTAEGDMRQAVNNLQSTVAGFG 229

Query: 234 EVAHAKTITREIA 246
            V           
Sbjct: 230 LVNGENVFRVADQ 242


>gi|312875754|ref|ZP_07735749.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners LEAF
           2053A-b]
 gi|311088746|gb|EFQ47195.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners LEAF
           2053A-b]
          Length = 583

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 49/265 (18%), Positives = 97/265 (36%), Gaps = 22/265 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPRT E   GQ   C  L+     +  R +     LF GP G GKT+ A++ A+ +    
Sbjct: 11  RPRTFEAVVGQSAICDTLR----NSIKRHKISHAFLFSGPRGTGKTSCAKIFAKAINCMD 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P    +  LAA    L   D++ ID      +  +  I +++ Y   + +    +
Sbjct: 67  SKDGEPCNQCSNCLAADKGIL--NDIIEIDAASNNGVDEIRAIRDKVKYAPTQGYYKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT +  +   +  R            + L
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRI-SNDQL 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              ++       +A  +++   IA  + G  R +  +L ++  + +       T  I   
Sbjct: 184 VNRMKFILDQEKIAYDEKSLQVIAQVADGGMRDSLSILDQILSYDQAKINYKDTLAITGY 243

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIAR 273
           A  ++ I+ +  D L+ +    +  
Sbjct: 244 A-DQVKIEALFLDLLNKKTSQALEE 267


>gi|294666543|ref|ZP_06731784.1| DNA polymerase III subunits gamma and tau [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
 gi|292603687|gb|EFF47097.1| DNA polymerase III subunits gamma and tau [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
          Length = 689

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 42/244 (17%), Positives = 75/244 (30%), Gaps = 53/244 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+   E  GQ      L   +++ +         LF G  G+GKTT+A++ A+ L    
Sbjct: 11  RPKRFAELVGQEHVVRALSNALDSGRVHHA----FLFTGTRGVGKTTIARIFAKSLNCET 66

Query: 83  ------------------------RSTSGPVIAKAGDLAALLTNLE------DRDVLFID 112
                                               D+  ++ N +         V  ID
Sbjct: 67  GTSADPCGTCPACLDIDAGRYIDLLEIDAASNTGVDDVREVIENAQYMPSRGKFKVYLID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS      L   +E+                         + ATT    L   +  
Sbjct: 127 EVHMLSKAAFNALLKTLEE------------------PPEHVKFLLATTDPQKLPVTVLS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R  +   L   + + ++  + R      +     A  +++  + G+ R    LL +   +
Sbjct: 169 RC-LQFNLKRLDEDQIQGQMTRILAAEQIESDPSAIVQLSKAADGSLRDGLSLLDQAIAY 227

Query: 233 AEVA 236
           A  A
Sbjct: 228 AGGA 231


>gi|229917436|ref|YP_002886082.1| DNA polymerase III, subunits gamma and tau [Exiguobacterium sp.
           AT1b]
 gi|229468865|gb|ACQ70637.1| DNA polymerase III, subunits gamma and tau [Exiguobacterium sp.
           AT1b]
          Length = 558

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 56/271 (20%), Positives = 100/271 (36%), Gaps = 23/271 (8%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RP++ +E  GQV         I+ A          LF GP G GKT+LA+++A+
Sbjct: 5   ALYRVYRPQSFQEVVGQVHIT----RTIQNALLEERMSHAYLFSGPRGTGKTSLAKIIAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +      T  P       +A  +T     DV  ID      +  +  I +++ YP  + 
Sbjct: 61  AINCESAPTREPCNTCPTCIA--ITEGTSPDVFEIDAASNNGVDEIREIRDKVKYPPSQG 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++   +    I ATT    +   +  R      +  
Sbjct: 119 RYKVYIIDEVHMLSTGAFNALLKTLEEPPAHAIFILATTEPHKIPATIISRCQ-RFDVKR 177

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           +E+  L+T +             EA   IA  + G  R A  LL +   F++    +   
Sbjct: 178 HEVSQLQTRMAYILNDQDHDYDPEALKLIARAADGGMRDALSLLDQALAFSDGRLTEEAV 237

Query: 243 REIADAALLRLAIDK-MGFDQLDLR-YLTMI 271
            E+  A      +D   G  + +L   L+ +
Sbjct: 238 LEVTGAVTDETLLDMAYGLQRKELNVILSTL 268


>gi|171680165|ref|XP_001905028.1| hypothetical protein [Podospora anserina S mat+]
 gi|170939709|emb|CAP64935.1| unnamed protein product [Podospora anserina S mat+]
          Length = 405

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 48/254 (18%), Positives = 86/254 (33%), Gaps = 59/254 (23%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAA---------------KARAEALDHVLFVG 61
             +   RP+TL + T Q    + L+  ++A+                  +  L H+LF G
Sbjct: 35  PWVEKYRPKTLSDVTAQDHTITVLQRTLQASNVCSPPSPPSSFPTNMTLSPQLPHMLFYG 94

Query: 62  PPGLGKTTLAQVVAR-------------ELGVNFRSTSGPVIAKAGDLAAL-LTNLE--- 104
           PPG GKT+    +A+             EL  +       V  K  D A + LTN+    
Sbjct: 95  PPGTGKTSTILALAKELYGPELMKSRVLELNASDERGISIVREKVKDFARMQLTNVSSAA 154

Query: 105 --------DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTL 156
                      ++ +DE   ++   +  L   ME +                  ++RF  
Sbjct: 155 YKARYPCPPFKIIILDEADSMTQDAQSALRRTMETYS----------------KITRF-- 196

Query: 157 IAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSR 216
                 V  + +PL  R     R    +  + K  ++  A+   + + + A   +   + 
Sbjct: 197 CLICNYVTRIIDPLASRCS-KFRFKSLDQGNAKKRLEEIAEKEKVGLDEGAVEGLINCAE 255

Query: 217 GTPRIAGRLLRRVR 230
           G  R A   L+   
Sbjct: 256 GDLRKAITYLQSAA 269


>gi|88809301|ref|ZP_01124809.1| DNA polymerase, gamma and tau subunits [Synechococcus sp. WH 7805]
 gi|88786520|gb|EAR17679.1| DNA polymerase, gamma and tau subunits [Synechococcus sp. WH 7805]
          Length = 587

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 84/221 (38%), Gaps = 19/221 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+ L++  GQ    + L   + + +         LF GP G GKT+ A+++AR L    
Sbjct: 13  RPQRLDQLVGQEAIAATLGHALRSGRIA----PAYLFSGPRGTGKTSSARILARSLNCLN 68

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P      +L   +      DV+ ID      +  +  ++E   +  ++      +
Sbjct: 69  SEGPTPEPCGHCELCTTIAAGTALDVIEIDAASNTGVDNIRDLIERSRFAPVQARWKVYV 128

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           V E             ++++    +   + ATT    +   +  R           +E L
Sbjct: 129 VDECHMLSTAAFNALLKTLEEPPPQVVFVLATTDPQRVLPTILSRCQ-RFDFRRIPLEAL 187

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           +  +   A+   + +  EA   +A R++G  R A  LL ++
Sbjct: 188 ERHLTWIAEQETIPIQPEALHVVAQRAQGGLRDAESLLDQL 228


>gi|294627932|ref|ZP_06706511.1| DNA polymerase III subunits gamma and tau [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 11122]
 gi|292597846|gb|EFF42004.1| DNA polymerase III subunits gamma and tau [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 11122]
          Length = 689

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 42/244 (17%), Positives = 75/244 (30%), Gaps = 53/244 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+   E  GQ      L   +++ +         LF G  G+GKTT+A++ A+ L    
Sbjct: 11  RPKRFAELVGQEHVVRALSNALDSGRVHHA----FLFTGTRGVGKTTIARIFAKSLNCET 66

Query: 83  ------------------------RSTSGPVIAKAGDLAALLTNLE------DRDVLFID 112
                                               D+  ++ N +         V  ID
Sbjct: 67  GTSADPCGTCPACLDIDAGRYIDLLEIDAASNTGVDDVREVIENAQYMPSRGKFKVYLID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS      L   +E+                         + ATT    L   +  
Sbjct: 127 EVHMLSKAAFNALLKTLEE------------------PPEHVKFLLATTDPQKLPVTVLS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R  +   L   + + ++  + R      +     A  +++  + G+ R    LL +   +
Sbjct: 169 RC-LQFNLKRLDEDQIQGQMTRILAAEQIESDPSAIVQLSKAADGSLRDGLSLLDQAIAY 227

Query: 233 AEVA 236
           A  A
Sbjct: 228 AGGA 231


>gi|119953249|ref|YP_945458.1| DNA polymerase III subunits gamma and tau [Borrelia turicatae
           91E135]
 gi|119862020|gb|AAX17788.1| DNA polymerase III subunit gamma/tau [Borrelia turicatae 91E135]
          Length = 548

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 68/306 (22%), Positives = 109/306 (35%), Gaps = 36/306 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPR L    GQ      LK  IE  K         +F GP G+GKT+ A+  AR L    
Sbjct: 12  RPRDLNSLEGQDFVVETLKHSIENNKIANAY----IFSGPRGVGKTSSARAFARCLNCKI 67

Query: 83  RSTSGPVIAKAGDLAAL--LTNLEDRDVLFIDEIHRLSII-----VEEILYPAMEDFQLD 135
               GP I       +   + N    D++ ID     S+       EEI++P        
Sbjct: 68  ----GPTIMPCDMCFSCKSIDNDNKLDIIEIDGASNTSVQDVKQIKEEIMFPPASSRYRV 123

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             ++++   S    I ATT V  L + ++ R           ++
Sbjct: 124 YIIDEVHMLSNSAFNALLKTIEEPPSYIVFIFATTEVHKLPDTIKSRCQ-HFNFRLLPLD 182

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA-HAKTITREI 245
            +  +++       +   DEA   IA +S G+ R A  L  ++   +      + I  ++
Sbjct: 183 KVYEMLKHVCLEDNIKYEDEALRWIAYKSGGSVRDAYTLFDQIVSLSNSDIQFERIRSKM 242

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEP--RDAIEDLIEPY 303
              +   L    +     DL+ L  I        V +  IS    E    D IE   E  
Sbjct: 243 GFTSSEFLEKLALSILNDDLKELLCILD-----AVFLTGIS---CEQLLLDTIEFFREIL 294

Query: 304 MIQQGF 309
            ++ G 
Sbjct: 295 FLKLGI 300


>gi|209965591|ref|YP_002298506.1| DNA polymerase III subunits gamma and tau [Rhodospirillum centenum
           SW]
 gi|209959057|gb|ACI99693.1| DNA polymerase III, subunits gamma and tau, putative
           [Rhodospirillum centenum SW]
          Length = 640

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 87/249 (34%), Gaps = 26/249 (10%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP++ +E  GQ      L+  I++ +         +  G  G+GKTT A+++AR L
Sbjct: 27  ARKYRPQSFDELVGQDALVRTLRNAIQSGRIHQAY----MLTGVRGVGKTTTARIIARAL 82

Query: 79  GV-NFRSTSGPVIAKAGDLAALLTNLEDR--DVLFID-----EIHRLSIIVEEILYPAME 130
                    GP I   G      +   DR  DVL +D      +  +  I++ + Y    
Sbjct: 83  NCVGPDGKGGPTITPCGVCEQCRSIAADRNVDVLEMDAASNTGVDNIREIIDGVRYAPAA 142

Query: 131 DFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
                 ++ E             ++++        + ATT +  +   +  R      L 
Sbjct: 143 ARYKLYIIDEVHMLSKGAFNALLKTLEEPPPHVKFVFATTEIRKVPITVLSRCQ-RFDLR 201

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
             +   L     R A   G+    EA   IA  + G+ R    LL    D A    +  +
Sbjct: 202 RVDQGTLVGHFTRIAGKEGVEADAEAISLIARAADGSVRDGLSLL----DQAIALGSGRV 257

Query: 242 TREIADAAL 250
           T E     L
Sbjct: 258 TAEQVRDML 266


>gi|291537700|emb|CBL10812.1| DNA polymerase III, subunits gamma and tau [Roseburia intestinalis
           M50/1]
          Length = 425

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 81/230 (35%), Gaps = 21/230 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP+  E+  GQ    + LK  I+A +         LF G  G GKTT+A++ A+
Sbjct: 5   ALYRKFRPQEFEDVKGQEHIVTTLKNQIKADRIGHAY----LFCGTRGTGKTTIAKIFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +         P   +     A+        V+ ID      +  +  I EE+ Y   E 
Sbjct: 61  AVNCEHPVDGSP-CGECPACKAIAAGNSMN-VIEIDAASNNGVDNIRQIREEVEYRPTEG 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++   S    I ATT    +   +  R         
Sbjct: 119 KYKVYIIDEVHMLSIGAFNALLKTLEEPPSYVIFILATTEAHKIPITILSRCQ-RYDFRR 177

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
             IE +   +    +   + V + A   IA  + G+ R A  LL +   F
Sbjct: 178 ISIETISARLMELMEKEQVTVEERAIRYIAKAADGSMRDALSLLDQCIAF 227


>gi|330960239|gb|EGH60499.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 717

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 68/329 (20%), Positives = 98/329 (29%), Gaps = 67/329 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPR+  E  GQ      LK  I A    ++ L H  LF G  G+GKTT+A+++A+ L   
Sbjct: 11  RPRSFREMVGQAHV---LKALINA--LDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNCE 65

Query: 82  FRSTS------------------------GPVIAKAGDLAALLTNLE------DRDVLFI 111
              TS                             K  D   LL N++         V  I
Sbjct: 66  TGITSTPCGTCSVCKEIDEGRFVDLIEIDAASRTKVEDTRELLDNVQYAPSRGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         I ATT    L   + 
Sbjct: 126 DEVHMLSSHSFNALLKTLEE------------------PPPYVKFILATTDPQKLPATIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L     E +   +     +  +   D+A   +   + G+ R A  L  +   
Sbjct: 168 SRC-LQFSLKNMTPERVVEHLTHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAIA 226

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLD-------LRYLTMIARNFGGGPVGIET 284
           F E              A+L        FD L           L  +      GP     
Sbjct: 227 FGEGK-----VMAADVRAMLGTLDHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGV 281

Query: 285 ISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
           +S  L+           P  +  G   R 
Sbjct: 282 LSEILNVLHRVAIAQALPEGVDNGHGDRD 310


>gi|328859221|gb|EGG08331.1| hypothetical protein MELLADRAFT_47841 [Melampsora larici-populina
           98AG31]
          Length = 346

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 68/189 (35%), Gaps = 29/189 (15%)

Query: 5   EGLLSR-NVSQED--ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           E + S    SQ+D    +   RP TLEE     +    ++ FI + +     L H+LF G
Sbjct: 11  ESIQSETEKSQKDNLPWVEKYRPSTLEEVVSHKDIIYTIQKFITSNR-----LPHLLFYG 65

Query: 62  PPGLGKTTLAQVVARE-------LGVNFRSTSGPVIAKAGDLAALLTNL--------EDR 106
           PPG GKT+    +AR+          N    +         +   + N            
Sbjct: 66  PPGTGKTSTILAIARQLYQTPMSFKNNVLELNASDDRGIEVVREQIKNFASARMVFSSGF 125

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDFQ--LDLMVGEGPSARSVKINLSRFTLIAATTRVG 164
            ++ +DE  +++   +  L   +E +   +   +      R      SR T      R G
Sbjct: 126 KLIILDEADQMTTTAQSALRRVIEQYTKNVRFCIICNYVNRISPAIQSRCTKF----RFG 181

Query: 165 LLTNPLQDR 173
            L  P  DR
Sbjct: 182 PLDLPEVDR 190


>gi|321456941|gb|EFX68037.1| hypothetical protein DAPPUDRAFT_301682 [Daphnia pulex]
          Length = 356

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 76/223 (34%), Gaps = 18/223 (8%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RPRT++E + Q E  + L+  ++ A      L ++LF GPPG GKT+     AR
Sbjct: 35  PWVEKYRPRTIDEVSYQEEVVAVLQKSLQGAD-----LPNLLFYGPPGTGKTSTILAAAR 89

Query: 77  E-----LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
           +             +         +   +     R V  +    +     + ++    + 
Sbjct: 90  DLFGDIYKDRVLELNASDERGIQVVREKVKIFSQRTVSSVRPDGKQCPPFKIVILDEADS 149

Query: 132 FQLDLMVGEGPSA--RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
                M G   +A  R+++              V  +  PL  R     R      E L 
Sbjct: 150 -----MTGAAQAALRRTMEKETKSTRFCLICNYVSRIIEPLTSRCS-KFRFKPLPREILV 203

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
             ++       ++ ++E    +   S G  R A   L+ + + 
Sbjct: 204 KRLEHICIAENMSCSEEVLESLIEASEGDLRRAITFLQSIANL 246


>gi|303271997|ref|XP_003055360.1| replication factor c, subunit 2 [Micromonas pusilla CCMP1545]
 gi|226463334|gb|EEH60612.1| replication factor c, subunit 2 [Micromonas pusilla CCMP1545]
          Length = 335

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 76/226 (33%), Gaps = 38/226 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP  ++E  G  +A   L     AA A    + +++F GPPG+GKTT    +A 
Sbjct: 12  PWVEKYRPTKIDEIVGNADAVERL-----AAMAATGNVPNLIFSGPPGIGKTTSILCLAH 66

Query: 77  ------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIHRLSIIVE 122
                       EL  +       V  K    A     L      ++ +DE   ++   +
Sbjct: 67  TLLGPAYKDAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVLLDEADSMTSAAQ 126

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           + +   ME +                 N +RF    A      +  P+Q R  I      
Sbjct: 127 QAMRRTMEIYS----------------NTTRF--ALACNASEKIIEPIQSRCAIVRFTRL 168

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            + E L+  V +  +   +    +    +   + G  R A   L+ 
Sbjct: 169 SDQEVLER-VMKVVEKEEVPYVPDGLEAVVFTADGDMRQALNNLQA 213


>gi|171692201|ref|XP_001911025.1| hypothetical protein [Podospora anserina S mat+]
 gi|170946049|emb|CAP72850.1| unnamed protein product [Podospora anserina S mat+]
          Length = 357

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 79/233 (33%), Gaps = 38/233 (16%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           S N + E   +   RP  L++  G  E    LK+      AR   + HV+  G PG+GKT
Sbjct: 28  SGNPTYELPWVEKYRPVFLDDVVGNTETIERLKII-----ARDGNMPHVIISGMPGIGKT 82

Query: 69  TLAQVVAR-----ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDV---------LFIDEI 114
           T    +AR              +         +   +     + V         + +DE 
Sbjct: 83  TSVLCLARQLLGDAYKEAVLELNASDERGIDVVRQRIKGFAQKKVTLPQGRHKLVILDEA 142

Query: 115 HRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRF 174
             ++   ++ L   ME +                 N +RF    A  +   +  PLQ R 
Sbjct: 143 DSMTSGAQQALRRTMEIYS----------------NTTRFAF--ACNQSNKIIEPLQSRC 184

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
            I +R      E +   + +     G+  +++    +   + G  R A   L+
Sbjct: 185 AI-LRYAKLTDEQVVKRLLQIIDAEGVKFSEDGLAALVFSAEGDMRQAINNLQ 236


>gi|46581600|ref|YP_012408.1| DNA polymerase III subunits gamma and tau [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|46451023|gb|AAS97668.1| DNA polymerase III, gamma and tau subunits, putative [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311235243|gb|ADP88097.1| DNA polymerase III, subunits gamma and tau [Desulfovibrio vulgaris
           RCH1]
          Length = 616

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 83/231 (35%), Gaps = 21/231 (9%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +  RP+T  E  GQ    +   +   AA+    A  + LF G  G+GKTT+A++ A+ L 
Sbjct: 8   ARYRPQTFAEVAGQETVKA---ILSRAAQENRVAPAY-LFSGTRGVGKTTIARIFAKALN 63

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHR-----LSIIVEEILYPAMEDFQL 134
               + +G           +   +   DV+ ID            + E I Y  ME    
Sbjct: 64  CTT-APTGEPCNTCEQCRKVTQGMHV-DVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             ++ E             ++++   +R T + ATT        +  R            
Sbjct: 122 VFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQ-HFTFTRLSE 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
             L+  + +     G+     A   IA R+ G+ R +  LL +V    E  
Sbjct: 181 AGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVLALGESR 231


>gi|261187582|ref|XP_002620210.1| activator 1 37 kDa subunit [Ajellomyces dermatitidis SLH14081]
 gi|239594101|gb|EEQ76682.1| activator 1 37 kDa subunit [Ajellomyces dermatitidis SLH14081]
 gi|239608919|gb|EEQ85906.1| activator 1 37 kDa subunit [Ajellomyces dermatitidis ER-3]
 gi|327354067|gb|EGE82924.1| replication factor C subunit 4 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 354

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 44/238 (18%), Positives = 78/238 (32%), Gaps = 38/238 (15%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           +E L       E   +   RP  L++  G  E    LK+      AR   + HV+  G P
Sbjct: 16  QENLAGAPADYELPWVEKYRPVFLDDVVGNTETIERLKII-----ARDGNMPHVIISGMP 70

Query: 64  GLGKTTLAQVVAR-----ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDV---------L 109
           G+GKTT    +AR              +         +   +     + V         +
Sbjct: 71  GIGKTTSILCLARQMLGDAYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPQGRHKLV 130

Query: 110 FIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
            +DE   ++   ++ L   ME +                   +RF    A  +   +  P
Sbjct: 131 ILDEADSMTSGAQQALRRTMEIYSTT----------------TRFAF--ACNQSNKIIEP 172

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
           LQ R  I       + + LK + Q   +   +  +++    +   + G  R A   L+
Sbjct: 173 LQSRCAILRYARLTDAQVLKRLTQ-ICEAENVKHSEDGLAALIFSAEGDMRQAINNLQ 229


>gi|297693133|ref|XP_002823878.1| PREDICTED: replication factor C subunit 5-like isoform 2 [Pongo
           abelii]
 gi|297693135|ref|XP_002823879.1| PREDICTED: replication factor C subunit 5-like isoform 3 [Pongo
           abelii]
          Length = 319

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 74/223 (33%), Gaps = 38/223 (17%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75
           +   RP+TL +     +  S ++ FI       + L H+L  GPPG GKT+     A   
Sbjct: 2   VEKYRPQTLNDLISHQDILSTIQKFI-----IEDRLPHLLLYGPPGTGKTSTILACAKQL 56

Query: 76  ---RELGVNFRSTSGPVIAKAGDLAA-LLTNLEDRDVL-------FIDEIHRLSIIVEEI 124
              +E G      +         +   +L+    R +         +DE   ++   +  
Sbjct: 57  YKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNA 116

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           L   +E F       E      +   LS+                LQ R     R     
Sbjct: 117 LRRVIEKF------TENTRFCLICNYLSKIIP------------ALQSRC-TRFRFGPLT 157

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
            E +   ++   +   + V+++    +   S G  R A  +L+
Sbjct: 158 PELMVPRLEHVVEEEKVDVSEDGMKALVTLSSGDMRRALNILQ 200


>gi|332192021|gb|AEE30142.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
          Length = 341

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 49/244 (20%), Positives = 82/244 (33%), Gaps = 46/244 (18%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           ++  +      +   RP+ +++   Q E    L   ++ A        H+LF GPPG GK
Sbjct: 1   MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADC-----PHMLFYGPPGTGK 55

Query: 68  TTLAQVVAR-------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------- 106
           TT A  +A              EL  +       V  K  D AA+      R        
Sbjct: 56  TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPS 115

Query: 107 -DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
             ++ +DE   ++   +  L   ME +                  ++RF  I     +  
Sbjct: 116 FKIIILDEADSMTEDAQNALRRTMETYS----------------KVTRFFFIC--NYISR 157

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           +  PL  R     R      E +   +       GL++  EA   ++  S+G  R A   
Sbjct: 158 IIEPLASRCA-KFRFKPLSEEVMSNRILHICNEEGLSLDGEALSTLSSISQGDLRRAITY 216

Query: 226 LRRV 229
           L+  
Sbjct: 217 LQSA 220


>gi|313225768|emb|CBY07242.1| unnamed protein product [Oikopleura dioica]
          Length = 329

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 72/226 (31%), Gaps = 38/226 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP  L++     E  S +K FIE      E L H+LF GPPG GKT+    VA+
Sbjct: 9   PWVEKYRPNKLDDLISHTEIISTIKKFIE-----NEQLPHLLFYGPPGTGKTSTILAVAK 63

Query: 77  E------LGVNFRSTSGPVIAKAGDLAALLTNL--------EDRDVLFIDEIHRLSIIVE 122
           E      L       +         +   + N         +   V+ +DE   ++   +
Sbjct: 64  ELYGAKNLKKMVLELNASDARGIDVVRNEILNFASSRSLHCKGFKVIILDECDAMTRDAQ 123

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             L   ME F                              +G L   +Q R     R   
Sbjct: 124 AALRRVMEKFT------------------KNVRFCLICNYLGKLIPAIQSRC-TRFRFAP 164

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
             +E +   +    +  G+ +       +   + G  R +  +L+ 
Sbjct: 165 LSVEQMMPRINHVVEEEGIDIDQNGMDLLLKMAEGDMRRSLNILQA 210


>gi|298386276|ref|ZP_06995832.1| DNA polymerase III, gamma/tau subunit [Bacteroides sp. 1_1_14]
 gi|298260653|gb|EFI03521.1| DNA polymerase III, gamma/tau subunit [Bacteroides sp. 1_1_14]
          Length = 619

 Score = 69.7 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 75/228 (32%), Gaps = 20/228 (8%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T E   GQ    + LK  I   K         LF GP G+GKTT A++ A+ +
Sbjct: 8   ARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAY----LFCGPRGVGKTTCARIFAKTI 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL-----YPAMEDFQ 133
                +  G    +     A        ++  +D     S+     L      P      
Sbjct: 64  NCMTPTADGEACNECESCVA-FNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKY 122

Query: 134 LDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
              ++ E             ++++        I ATT    +   +  R  I    N   
Sbjct: 123 KVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQI-YDFNRIS 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           +ED    +   A    +    EA   IAM++ G  R A  +  +V  F
Sbjct: 182 VEDTVNHLSYVAAKENITAEPEALNVIAMKADGGMRDALSIFDQVVSF 229


>gi|20090661|ref|NP_616736.1| replication factor C large subunit [Methanosarcina acetivorans C2A]
 gi|42559496|sp|Q8TPU4|RFCL_METAC RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|19915708|gb|AAM05216.1| replication factor C, large subunit [Methanosarcina acetivorans
           C2A]
          Length = 607

 Score = 69.7 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 51/248 (20%), Positives = 97/248 (39%), Gaps = 30/248 (12%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
                RPRTLE+  G  +A  + + + E  ++R      V+  GP G+GKT+ A  +AR+
Sbjct: 12  WAEKYRPRTLEDVVGNKKAVRDFRAWAEEWQSRIPETRAVILYGPAGIGKTSSAHALARD 71

Query: 78  LGVNFR------STSGPVIAK-AGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           +  +          +  VI K AG  A++ T    + ++ +DE   +        +   +
Sbjct: 72  MDWDVIELNASDQRTAGVIEKIAGSAASMNTLFGSKRLIILDEADNI--------HGTAD 123

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
              +  + G       +K  L    LIA    +  LT P      + I+    +   +  
Sbjct: 124 RGGMRAISG------IIKGTLQPIVLIA--NDIYGLT-PTIRNLCLEIKFGSVQSRSMVP 174

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR------DFAEVAHAKTITRE 244
            +++     G+  + EA  +IA  + G  R A   L+         +  ++  A    +E
Sbjct: 175 ALKKVCGAEGVYCSQEALLQIAENAGGDFRSAINDLQAAASGKEKLEVEDIGTAGRDVKE 234

Query: 245 IADAALLR 252
               A+ +
Sbjct: 235 NIFKAMQK 242


>gi|72383094|ref|YP_292449.1| DNA polymerase III subunit tau [Prochlorococcus marinus str.
           NATL2A]
 gi|72002944|gb|AAZ58746.1| DNA polymerase III, tau subunit [Prochlorococcus marinus str.
           NATL2A]
          Length = 565

 Score = 69.7 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 85/228 (37%), Gaps = 19/228 (8%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +      RP + +E  GQ    S LK  + + +         +F GP G GKT+ A++ A
Sbjct: 6   EPLHHKYRPTSFDELVGQDPIKSTLKQALISDRIA----PAYIFSGPRGTGKTSSARIFA 61

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAME 130
           + L       +        +L   +++    DV+ ID      +  +  ++E   +   +
Sbjct: 62  KSLNCLKSEKATTTPCGQCELCKGISSGNALDVIEIDAASNTGVENIRELIERSRFAPAK 121

Query: 131 DFQLDLMVGEGPSARSVKIN--------LSR-FTLIAATTRVGLLTNPLQDRFGIPIRLN 181
                 ++ E     +   N          R    I ATT    +   +  R  +     
Sbjct: 122 ARWKVYVIDECHMLSTAAFNALLKTLEEPPRQVVFILATTDPQRVLPTILSRC-MRFDFR 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
              + DL++ +   AK   + + +EA   IA  S+G  R A  LL +V
Sbjct: 181 RIALHDLESHLINIAKKEEIQINEEAISLIAKHSQGGLRDAESLLDQV 228


>gi|323307063|gb|EGA60346.1| Rfc4p [Saccharomyces cerevisiae FostersO]
          Length = 382

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 44/235 (18%), Positives = 84/235 (35%), Gaps = 38/235 (16%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           ++S+ +S +   +   RP+ L +  G  E    L+       A+   + H++  G PG+G
Sbjct: 59  IMSKTLSLQLPWVEKYRPQVLSDIVGNKETIDRLQQI-----AKDGNMPHMIISGMPGIG 113

Query: 67  KTTLAQVVARE-----LGVNFRSTSGPVIAKAGDLAALLTNLEDR---------DVLFID 112
           KTT    +A E             +         +   + +   +          ++ +D
Sbjct: 114 KTTSVHCLAHELLGRSYADGVLELNASDDRGIXVVRNQIKHFAQKKLHLPPGKHKIVILD 173

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E   ++   ++ L   ME +                 N +RF    A  +   +  PLQ 
Sbjct: 174 EADSMTAGAQQALRRTMELYS----------------NSTRFAF--ACNQSNKIIEPLQS 215

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
           R  I       + + LK ++Q   KL  +  T++    I   + G  R A   L+
Sbjct: 216 RCAILRYSKLSDEDVLKRLLQ-IIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQ 269


>gi|317492877|ref|ZP_07951301.1| DNA polymerase III [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918999|gb|EFV40334.1| DNA polymerase III [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 667

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 58/306 (18%), Positives = 104/306 (33%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+ L    
Sbjct: 11  RPQTFSDVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCET 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
             TS P      D    +      D+L ID   R  +     L       PA   F++ L
Sbjct: 67  GITSTP--CGVCDNCREIEQGRFVDLLEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++        + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +T +++ +   G      A   +A  + G+ R A  L     D A       IT E    
Sbjct: 184 RTQLEKISTAEGFTAEPRALQLLARAAEGSMRDALSL----TDQAIAMGLGQITAETVGQ 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L       D+  L  +  +    G   + +   +A      + +       + +  
Sbjct: 240 MLGTLD------DEQPLAIIEALVDADGEKVMALVEQAASRGVDWENLLIETLTLLHRIA 293

Query: 309 FIQRTP 314
            +Q  P
Sbjct: 294 MLQLLP 299


>gi|156057403|ref|XP_001594625.1| hypothetical protein SS1G_04432 [Sclerotinia sclerotiorum 1980]
 gi|154702218|gb|EDO01957.1| hypothetical protein SS1G_04432 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 412

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 48/239 (20%), Positives = 81/239 (33%), Gaps = 50/239 (20%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+ L + T Q    + L+  ++++      L H+LF GPPG GKT+    +A+
Sbjct: 34  PWVEKYRPKGLGDVTAQDHTITVLQRTLQSS-----NLPHMLFYGPPGTGKTSTVLALAK 88

Query: 77  -------------ELGVNFRSTSGPVIAKAGDLAAL-LTNLE----------DRDVLFID 112
                        EL  +       V  K  D A + L+N               ++ +D
Sbjct: 89  ELYGPELIKSRVLELNASDERGISIVREKVKDFARMQLSNPSPAYRQKYPCPPYKIIILD 148

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA-TTRVGLLTNPLQ 171
           E   ++   +  L   ME +                   SR T        V  + +PL 
Sbjct: 149 EADSMTQDAQSALRRTMETY-------------------SRITRFCLICNYVTRIIDPLA 189

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
            R     R    +  +    V+  A   G+ + + A   +   S G  R A   L+   
Sbjct: 190 SRCS-KFRFKSLDKGNAVVRVKEIADKEGVKLEEGAVEALIRCSEGDLRKAITYLQSAA 247


>gi|78355113|ref|YP_386562.1| DNA polymerase III subunit tau [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78217518|gb|ABB36867.1| DNA polymerase III, tau subunit [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 577

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 81/224 (36%), Gaps = 21/224 (9%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +  RP+T  +  GQ    + L     AA+ R       LF G  G+GKTT+A++ A+ L 
Sbjct: 8   AKYRPQTFADVAGQETVKAILSRA--AAENRVA--PAYLFSGTRGVGKTTIARIFAKALN 63

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHR-----LSIIVEEILYPAMEDFQL 134
              R  +     +      +   +   DV+ ID            + E I Y  ME    
Sbjct: 64  C-TRGPAAEPCNECEQCRKITQGMAV-DVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             ++ E             ++++   +  T + ATT        +  R    I       
Sbjct: 122 VFIIDEAHMLTREAFNALLKTLEEPPANVTFVMATTEPHKFPVTIVSRCQHFIFKRL-TE 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
             L   + R  +  G     EA   IA R+ G+ R +  LL +V
Sbjct: 181 NGLAAHLVRILEREGTGYESEAVKLIARRAAGSVRDSMSLLGQV 224


>gi|297287127|ref|XP_002803097.1| PREDICTED: replication factor C subunit 4-like isoform 1 [Macaca
           mulatta]
 gi|297287129|ref|XP_002803098.1| PREDICTED: replication factor C subunit 4-like isoform 2 [Macaca
           mulatta]
          Length = 363

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 77/234 (32%), Gaps = 45/234 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+ ++E   Q E  + LK  +E A      L ++LF GPPG GKT+     AR
Sbjct: 39  PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGAD-----LPNLLFYGPPGTGKTSTILAAAR 93

Query: 77  -------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD--------VLFIDEIH 115
                        EL  +       V  K  + A L  +    D        ++ +DE  
Sbjct: 94  ELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEAD 153

Query: 116 RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
            ++   +  L   ME                     +RF        V  +  PL  R  
Sbjct: 154 SMTSAAQAALRRTMEKESKT----------------TRF--CLICNYVSRIIEPLTSRCS 195

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
              R      +  +  +   A+   + ++DE    +   S G  R A   L+  
Sbjct: 196 -KFRFKPLSDKIQQQRLLDIAEKENVKISDEGIAYLVKVSEGDLRKAITFLQSA 248


>gi|291537839|emb|CBL10950.1| DNA polymerase III, subunits gamma and tau [Roseburia intestinalis
           XB6B4]
          Length = 526

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 81/230 (35%), Gaps = 21/230 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP+  E+  GQ    + LK  I+A +         LF G  G GKTT+A++ A+
Sbjct: 5   ALYRKFRPQEFEDVKGQEHIVTTLKNQIKADRIGHAY----LFCGTRGTGKTTIAKIFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +         P   +     A+        V+ ID      +  +  I EE+ Y   E 
Sbjct: 61  AVNCEHPVDGSP-CGECPACKAIAAGNSMN-VIEIDAASNNGVDNIRQIREEVEYRPTEG 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++   S    I ATT    +   +  R         
Sbjct: 119 KYKVYIIDEVHMLSIGAFNALLKTLEEPPSYVIFILATTEAHKIPITILSRCQ-RYDFRR 177

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
             IE +   +    +   + V + A   IA  + G+ R A  LL +   F
Sbjct: 178 ISIETISARLMELMEKEQVTVEERAIRYIAKAADGSMRDALSLLDQCIAF 227


>gi|218263761|ref|ZP_03477753.1| hypothetical protein PRABACTJOHN_03443 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222520|gb|EEC95170.1| hypothetical protein PRABACTJOHN_03443 [Parabacteroides johnsonii
           DSM 18315]
          Length = 606

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 81/228 (35%), Gaps = 20/228 (8%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T     GQ    + LK  I++ K         LF GP G+GKT+ A++ A+ +
Sbjct: 8   ARKYRPSTFRSVVGQKSLTTTLKNAIQSNKLAHAY----LFCGPRGVGKTSCARIFAKTI 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI------IVEEILYPAMEDF 132
                +  G    +     A        ++  +D     S+      I +  + P +  +
Sbjct: 64  NCLNPTADGEACNECESCKA-FNEQRSYNIHELDAASNNSVDDIRALIDQVRIPPPIGKY 122

Query: 133 QLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           ++ ++               ++++        I ATT    +   +  R  I        
Sbjct: 123 KVFIIDEVHMLSSAAFNAFLKTLEEPPHHALFILATTEKHKVLPTILSRCQIYDFSRI-S 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           I D+   ++  +   G+    EA   IA ++ G  R A  +  +V  F
Sbjct: 182 IADMVEHLEYVSSCEGVTAEPEALNVIAQKADGGMRDALSIFDQVVSF 229


>gi|42566294|ref|NP_192327.3| AAA-type ATPase family protein [Arabidopsis thaliana]
 gi|332656970|gb|AEE82370.1| AAA-type ATPase family protein [Arabidopsis thaliana]
          Length = 609

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 50/204 (24%), Positives = 85/204 (41%), Gaps = 21/204 (10%)

Query: 47  AKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALL---- 100
           +K  +     VLF GPPG GKT+ A+V+A + G+         +     G+   LL    
Sbjct: 354 SKFESNRPRAVLFEGPPGTGKTSCARVIANQAGIPLLYVPLEAVMSKYYGESERLLGAVF 413

Query: 101 ---TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLI 157
                L D  ++F+DEI   +I  +  ++ A     L +++ +            +  +I
Sbjct: 414 SQANELPDGAIIFLDEIDAFAISRDSEMHEAT-RRVLSVLLRQIDGFE----QEKKVVVI 468

Query: 158 AATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRG 217
           AAT R   L   L  RF   I  +  +++  + I+ + AK            E+   ++ 
Sbjct: 469 AATNRKQDLDPALISRFDSMIMFDLPDLQTRQEIIAQYAKQLSKP-------ELVQLAQA 521

Query: 218 TPRIAGRLLRRVRDFAEVAHAKTI 241
           T  ++GR +R V   AE   A  I
Sbjct: 522 TEAMSGRDIRDVCQGAERTWASKI 545


>gi|303245250|ref|ZP_07331534.1| DNA polymerase III, subunits gamma and tau [Desulfovibrio
           fructosovorans JJ]
 gi|302493099|gb|EFL52961.1| DNA polymerase III, subunits gamma and tau [Desulfovibrio
           fructosovorans JJ]
          Length = 598

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 81/224 (36%), Gaps = 23/224 (10%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +  RP+   +  GQ       ++   AA A  +     LF G  G+GKTTLA+V+A+ L 
Sbjct: 8   AKYRPQRFADVAGQDAIK---RILSRAA-AEDKIAPAYLFSGTRGVGKTTLARVLAKALN 63

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQL 134
               + +            +   +   DV+ ID     ++     + E++ Y  ++    
Sbjct: 64  CE-SAPTAEPCNVCSQCRQITAGVSP-DVIEIDAATHGKVEDARKLKEDVGYAPLQSRYK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             ++ E             ++++   +R T I ATT        +  R    +     + 
Sbjct: 122 VFIIDEAHMLSTAAFNALLKTLEEPPARVTFILATTEAHKFPATIISRCQHFLFKRLAQP 181

Query: 186 E---DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
           E    L  ++ R A           A   A   R +  + G++L
Sbjct: 182 ELEVHLAGVLDREAIHYESTAVSLIARRGAGSVRDSMSLLGQVL 225


>gi|260427427|ref|ZP_05781406.1| DNA polymerase III subunit tau [Citreicella sp. SE45]
 gi|260421919|gb|EEX15170.1| DNA polymerase III subunit tau [Citreicella sp. SE45]
          Length = 588

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 61/311 (19%), Positives = 107/311 (34%), Gaps = 31/311 (9%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           +S    +        RP T  +  GQ      LK   +A +         +  G  G GK
Sbjct: 1   MSEQSPKYQVLARKYRPETFADLVGQDAMVRTLKNAFKAGRIAQA----FIMTGIRGTGK 56

Query: 68  TTLAQVVARELGV-NFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEI 124
           TT A+++A+ +         GP     G        +E R  DV+ +D      +     
Sbjct: 57  TTTARIIAKGMNCIGPDGEGGPTTEPCGVCEHCKAIMEGRHVDVMEMDAASNTGVGDIRE 116

Query: 125 L-----YPAMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           +     Y A        ++ E             ++++   +    I ATT +  +   +
Sbjct: 117 IIDSVHYRAASARYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTV 176

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
             R      L   E E +  ++++ A      +TD+A   I   + G+ R A  LL    
Sbjct: 177 LSRCQ-RFDLRRIEPEVMIALLRKIASSESAEITDDALALITRAAEGSARDATSLL---- 231

Query: 231 DFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
           D A    A   T E   A L      ++    +DL +  ++  +  G    +    A  +
Sbjct: 232 DQAISHGAGETTAEQVRAMLGLADRGRV----MDL-FEKIMRGDAPGALTELSEQYADGA 286

Query: 291 EPRDAIEDLIE 301
           +P   + DL E
Sbjct: 287 DPLAVLRDLAE 297


>gi|21241864|ref|NP_641446.1| DNA polymerase III subunits gamma and tau [Xanthomonas axonopodis
           pv. citri str. 306]
 gi|21107246|gb|AAM35982.1| DNA polymerase III tau and gamma subunits [Xanthomonas axonopodis
           pv. citri str. 306]
          Length = 689

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 42/244 (17%), Positives = 75/244 (30%), Gaps = 53/244 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+   E  GQ      L   +++ +         LF G  G+GKTT+A++ A+ L    
Sbjct: 11  RPKRFAELVGQEHVVRALSNALDSGRVHHA----FLFTGTRGVGKTTIARIFAKSLNCET 66

Query: 83  ------------------------RSTSGPVIAKAGDLAALLTNLE------DRDVLFID 112
                                               D+  ++ N +         V  ID
Sbjct: 67  GTSADPCGTCPACLDIDAGRYIDLLEIDAASNTGVDDVREVIENAQYMPSRGKFKVYLID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS      L   +E+                         + ATT    L   +  
Sbjct: 127 EVHMLSKAAFNALLKTLEE------------------PPEHVKFLLATTDPQKLPVTVLS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R  +   L   + + ++  + R      +     A  +++  + G+ R    LL +   +
Sbjct: 169 RC-LQFNLKRLDEDQIQGQMTRILAAEPIESDPSAIVQLSKAADGSLRDGLSLLDQAIAY 227

Query: 233 AEVA 236
           A  A
Sbjct: 228 AGGA 231


>gi|113475969|ref|YP_722030.1| vesicle-fusing ATPase [Trichodesmium erythraeum IMS101]
 gi|110167017|gb|ABG51557.1| Vesicle-fusing ATPase [Trichodesmium erythraeum IMS101]
          Length = 639

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 58/251 (23%), Positives = 105/251 (41%), Gaps = 34/251 (13%)

Query: 8   LSRNVSQE------DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALD------ 55
           +++N +QE       +  + LRP TL +  G  E    L+  IE    R + L       
Sbjct: 80  VTQNRAQEKTNSTTSSPETKLRP-TLRDIGGMSEVIQELREVIELPLKRPDLLTKLGLEP 138

Query: 56  --HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLEDRD 107
              VL VGPPG GKT  A+ +A ELG+N+ + +GP +         G L  +    +   
Sbjct: 139 SRGVLLVGPPGTGKTLTAKAIAEELGLNYIAINGPEVMSKYYGEAEGKLRDIFAKAKKSA 198

Query: 108 --VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
             ++FIDEI  ++    ++    +E   +  ++G       ++  L    L+AAT R   
Sbjct: 199 PCLIFIDEIDSIAPDRSKVEGE-VEKRLVAQLLGLMDGFEVLEGVL----LLAATNRPDH 253

Query: 166 LTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAG 223
           +   L+   RF   +  +  + +    I+Q    +   A+  + + ++   +     + G
Sbjct: 254 IDPALRRPGRFDQEVYFHVPDRDGRSEILQ----ILTKAMPLDNSVDLEEIADLAVGLVG 309

Query: 224 RLLRRVRDFAE 234
             L+ V   A 
Sbjct: 310 ADLKAVCQKAA 320



 Score = 45.8 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 45/199 (22%), Positives = 78/199 (39%), Gaps = 15/199 (7%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLT 101
           K +A+A   +L  G PG GKT LA+ VA +   NF + +GP +      A    +  L +
Sbjct: 402 KTKAKAPKGILLWGEPGTGKTLLAKAVASQAQANFIAVNGPELLSKWVGAAEEAVRELFS 461

Query: 102 NLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA 159
                   V+FIDEI  L+    + +         D +VG+  +      + ++  L+ A
Sbjct: 462 KARQVSPCVIFIDEIDTLAPARGKTMGD---SGVSDRLVGQLLTELDGLRDCTQLLLVGA 518

Query: 160 TTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRG 217
           T R   L   L    R  + I+++  +      I++         + +    + A R+ G
Sbjct: 519 TNRPDALDPALLRAGRLDLQIKVDLPDQASRLEILK--VHNQDRPLEEVNLEDWASRTEG 576

Query: 218 TPRIAGRLLRRVRDFAEVA 236
                  LL      A + 
Sbjct: 577 WNGADLALLTNQAALAAIR 595


>gi|146414968|ref|XP_001483454.1| hypothetical protein PGUG_04183 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 347

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 74/231 (32%), Gaps = 28/231 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+ L++   Q  A + LK  + +A      L H+LF GPPG GKT+    +AR
Sbjct: 21  PWVEKYRPKNLDDVASQDHAVNVLKKSLVSA-----NLPHMLFYGPPGTGKTSTVLALAR 75

Query: 77  E------LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           E      +       +         +   + N     V         S    E  YP   
Sbjct: 76  ELYGPDLIKSRVLELNASDERGIAIVRQKVKNFARLTV------SNASPEDLE-KYP-CP 127

Query: 131 DFQLDLMVGEGPSARSVKINLSR--------FTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
            ++L ++          +  L R                 +  + +PL  R     R   
Sbjct: 128 PYKLIILDEADSMTYDAQAALRRTMETYSGVTRFCLICNYITRIIDPLALRCS-KFRFKP 186

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
              ++    ++   +   L V ++    +   S G  R A   L+     A
Sbjct: 187 LANDNAVQRLRYIVQQEELNVDEDVFSYLLTISNGDLRRAITYLQSAARLA 237


>gi|328774020|gb|EGF84057.1| hypothetical protein BATDEDRAFT_84775 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 358

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 46/236 (19%), Positives = 76/236 (32%), Gaps = 37/236 (15%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           +   +V      +   RP  L+E     +  S +  FI+  K     L H+LF GPPG G
Sbjct: 27  VYDESVVDSLPWVEKYRPSRLDELISHKDIISTIVRFIDENK-----LPHMLFYGPPGTG 81

Query: 67  KTTLAQVVARE-LGVNFRST----SGPVIAKAGDLAALLTNL--------EDRDVLFIDE 113
           KT+     AR+  G  FRS     +         +   + N             ++ +DE
Sbjct: 82  KTSTILACARKLYGDKFRSMILELNASDDRGIDVVREQIKNFASTRKLFSSGFKLIILDE 141

Query: 114 IHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
              ++   +  L   +E +                              VG +   LQ R
Sbjct: 142 ADAMTQAAQNALRRVIEQYT------------------KNVRFCLICNYVGKIIPALQSR 183

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
                R    E   +   +       G+ +T      +   S+G  R A  +L+ V
Sbjct: 184 C-TRFRFAPLEEAQISDRITHIINQEGINITQAGRQAVLKLSQGDMRRALNILQAV 238


>gi|325279833|ref|YP_004252375.1| DNA polymerase III, subunits gamma and tau [Odoribacter
           splanchnicus DSM 20712]
 gi|324311642|gb|ADY32195.1| DNA polymerase III, subunits gamma and tau [Odoribacter
           splanchnicus DSM 20712]
          Length = 369

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 60/297 (20%), Positives = 91/297 (30%), Gaps = 74/297 (24%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP + +   GQ+   S L+  I       +     LF GP G+GKTT A++ A+ +
Sbjct: 8   ARKYRPASFDTVVGQLAITSTLRNAI----VNHQLAQAYLFTGPRGVGKTTCARIFAKTI 63

Query: 79  GVNFRSTSGP-------------------------------VIAKAGDLAALLTNLEDRD 107
                  +                                  I    +   +L  +    
Sbjct: 64  NCLNLQPNAEPCNECESCKAFNAGRSLNIHELDAASNNSVDDIRGLVEQVRILPQVGKYS 123

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           V  IDE+H LS          +E+          P A ++ I         ATT    + 
Sbjct: 124 VYIIDEVHMLSTSAFNAFLKTLEE----------PPAHAIFIL--------ATTEKHKIL 165

Query: 168 NPLQDRFGIPIRLNF---YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGR 224
             +  R  I           +E LK I    +   G+   + A   IA ++ G  R A  
Sbjct: 166 PTILSRCQIYDFNRMKVGDTVEHLKYI----SAKEGITAEEAALDVIAQKADGAMRDALS 221

Query: 225 LLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVG 281
           +  +V  F      K +T E     L  L  D          Y   +   F  G VG
Sbjct: 222 IFDQVVSFC----GKNLTYEKVIENLNVLDYD----------YYFRLTDLFNAGKVG 264


>gi|310826413|ref|YP_003958770.1| DNA polymerase III subunits gamma and tau [Eubacterium limosum
           KIST612]
 gi|308738147|gb|ADO35807.1| DNA polymerase III subunits gamma and tau [Eubacterium limosum
           KIST612]
          Length = 477

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 56/255 (21%), Positives = 90/255 (35%), Gaps = 23/255 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP+  +   GQ      LK  I + +         LF G  G GKT++A++ AR
Sbjct: 5   ALYRRYRPQDFDSVVGQEYVTRILKNQILSGRVGHAY----LFSGIRGTGKTSIAKIFAR 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHR-----LSIIVEEILYPAMED 131
            +         P    A D    +      D++ ID         +  I E++ YP    
Sbjct: 61  AINCEHNEDGNP--CNACDTCLNIEKPGVMDIIEIDGASNRGVDEIREIREKVKYPPTMG 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT    L   +  R      +  
Sbjct: 119 KYKVYIIDEVHMLTKEAFNALLKTLEEPPEHIVFILATTEPNKLPMTILSRCQ-RFDIKP 177

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
              E +   +    +  G+++  EA   IA R   + R A  LL +V D  E    KTIT
Sbjct: 178 ISQERIAGQIAHILEDIGVSMDREAIDFIAYRGDSSMRDALSLLDQVIDIREA--DKTIT 235

Query: 243 REIADAALLRLAIDK 257
            E   A +  +  D+
Sbjct: 236 YEDVLAFMGMVDEDQ 250


>gi|169351620|ref|ZP_02868558.1| hypothetical protein CLOSPI_02400 [Clostridium spiroforme DSM 1552]
 gi|169291842|gb|EDS73975.1| hypothetical protein CLOSPI_02400 [Clostridium spiroforme DSM 1552]
          Length = 593

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 87/230 (37%), Gaps = 23/230 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP+T +E  GQ    + LK  I+  +         LF GP G GKTT+A+++A+
Sbjct: 5   ALYRSYRPQTFDEVAGQEHIVTTLKNAIKENRIAHAY----LFAGPRGTGKTTVAKLLAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            L     +   P      +  A+  +    DV+ ID      +  +  +++++ Y  +  
Sbjct: 61  ALNC---TGDNPPCDNCPNCKAITASQHP-DVIEIDAASNNGVDEVRDLIDKVKYAPING 116

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++   +    I ATT    +   +  R         
Sbjct: 117 KYKVYIIDEVHMMSQGAFNALLKTLEEPPAHIIFILATTEPHKILPTIISRCQ-RFDFKK 175

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
            + +D+ + ++   K        +A   +A  + G  R A  +L +   +
Sbjct: 176 VDDQDIVSRLEYVLKNENKEYELDALKLVAKLAEGGMRDALSILEQCLAY 225


>gi|154276822|ref|XP_001539256.1| activator 1 37 kDa subunit [Ajellomyces capsulatus NAm1]
 gi|150414329|gb|EDN09694.1| activator 1 37 kDa subunit [Ajellomyces capsulatus NAm1]
          Length = 354

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 44/238 (18%), Positives = 80/238 (33%), Gaps = 38/238 (15%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           +E L       E   +   RP  L++  G  E    LK+      AR   + HV+  G P
Sbjct: 16  QENLAGAPADYELPWVEKYRPVFLDDIVGNTETIERLKII-----ARNGNMPHVIISGMP 70

Query: 64  GLGKTTLAQVVAREL-----GVNFRSTSGPVIAKAGDLAALLTNLEDRDV---------L 109
           G+GKTT    +AR++            +         +   +     + V         +
Sbjct: 71  GIGKTTSILCLARQMLGNSYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPQGRHKLV 130

Query: 110 FIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
            +DE   ++   ++ L   ME +                   +RF    A  +   +  P
Sbjct: 131 ILDEADSMTSGAQQALRRTMEIYSTT----------------TRFAF--ACNQSNKIIEP 172

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
           LQ R  I       + + LK + Q   +   +  +++    +   + G  R A   L+
Sbjct: 173 LQSRCAILRYARLTDGQILKRLTQ-ICEAEKVKYSEDGLEALIFSAEGDMRQAINNLQ 229


>gi|84490197|ref|YP_448429.1| putative 26S protease, regulatory subunit [Methanosphaera
           stadtmanae DSM 3091]
 gi|84373516|gb|ABC57786.1| putative 26S protease, regulatory subunit [Methanosphaera
           stadtmanae DSM 3091]
          Length = 370

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 58/278 (20%), Positives = 106/278 (38%), Gaps = 29/278 (10%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKV---FIEA-AKARAEALDH 56
           M  ++  + + +S+ +  +S        +  GQ +A +  K+   ++E   K +  A  +
Sbjct: 105 MFKQDSKIKQTLSKHEYKVS--------DVVGQTKAKNKAKIITNYLENPDKFKNWAPRN 156

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           +LF G PG GKT LAQ +A EL V         +     GD A  +  L  +       V
Sbjct: 157 ILFYGRPGTGKTMLAQALANELNVPIHMIKATSLIGNHVGDGANQIHELYKQARYTKPTV 216

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +FIDEI  +++  +           +  +V    +      +      I AT    +L  
Sbjct: 217 IFIDEIDAIALERKYQSL----RGDVTEIVNALLTEMDGIEDNDSIITICATNNPEILDY 272

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVT---DEAACEIAMRSRGTPRIAGRL 225
            ++ RF   I       E+ + I+++  K   L  +   D+  CE    S    +   ++
Sbjct: 273 AIRSRFEEEIEFTLPNDEERRIILEKNIKTLPLKCSFNLDKLVCETKNLSGRDMK--EKI 330

Query: 226 LRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQL 263
           L+     A       I  E    AL  +  +    D++
Sbjct: 331 LKTALHRALCDSRDVINDEDVSYALDEIRKEVKHSDKM 368


>gi|225554309|gb|EEH02609.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
 gi|240277074|gb|EER40584.1| activator 1 37 kDa subunit [Ajellomyces capsulatus H143]
 gi|325095015|gb|EGC48325.1| activator 1 37 kDa subunit [Ajellomyces capsulatus H88]
          Length = 354

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 44/238 (18%), Positives = 80/238 (33%), Gaps = 38/238 (15%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           +E L       E   +   RP  L++  G  E    LK+      AR   + HV+  G P
Sbjct: 16  QENLAGAPADYELPWVEKYRPVFLDDIVGNTETIERLKII-----ARNGNMPHVIISGMP 70

Query: 64  GLGKTTLAQVVAREL-----GVNFRSTSGPVIAKAGDLAALLTNLEDRDV---------L 109
           G+GKTT    +AR++            +         +   +     + V         +
Sbjct: 71  GIGKTTSILCLARQMLGDSYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPQGRHKLV 130

Query: 110 FIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
            +DE   ++   ++ L   ME +                   +RF    A  +   +  P
Sbjct: 131 ILDEADSMTSGAQQALRRTMEIYSTT----------------TRFAF--ACNQSNKIIEP 172

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
           LQ R  I       + + LK + Q   +   +  +++    +   + G  R A   L+
Sbjct: 173 LQSRCAILRYARLTDGQILKRLTQ-ICEAEKVKYSEDGLEALIFSAEGDMRQAINNLQ 229


>gi|148643026|ref|YP_001273539.1| 26S protease regulatory subunit [Methanobrevibacter smithii ATCC
           35061]
 gi|222445263|ref|ZP_03607778.1| hypothetical protein METSMIALI_00891 [Methanobrevibacter smithii
           DSM 2375]
 gi|261350178|ref|ZP_05975595.1| putative 26S protease regulatory subunit-like protein
           [Methanobrevibacter smithii DSM 2374]
 gi|148552043|gb|ABQ87171.1| predicted 26S protease regulatory subunit (ATP-dependent), AAA+
           family ATPase [Methanobrevibacter smithii ATCC 35061]
 gi|222434828|gb|EEE41993.1| hypothetical protein METSMIALI_00891 [Methanobrevibacter smithii
           DSM 2375]
 gi|288860964|gb|EFC93262.1| putative 26S protease regulatory subunit-like protein
           [Methanobrevibacter smithii DSM 2374]
          Length = 374

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 49/239 (20%), Positives = 87/239 (36%), Gaps = 17/239 (7%)

Query: 26  TLEEFTGQVEACSNLKVFI----EAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
            + +  GQ  A +  KV I    E  K    A  ++LF G PG GKT L + +A EL V 
Sbjct: 126 KISDIVGQENAKNKTKVLIKYLEEPDKFGEWAPKNILFYGFPGTGKTMLVKALANELDVP 185

Query: 82  FRSTSGPVI--AKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQ 133
                   +     GD A+ +  L ++       ++FIDEI  +++              
Sbjct: 186 LYLIKATSLIGEHVGDSASKIQELFEKAQKTAPSIIFIDEIDAIALHRSFQSL----RGD 241

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           +  +V    +      +      I AT     +   ++ RF   I     +  + K+I +
Sbjct: 242 VAEIVNSLLTEMDGINDNKAVVTIGATNNPNSIDYAVRSRFEEEIEFVLPDDNERKSIFE 301

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPR-IAGRLLRRVRDFAEVAHAKTITREIADAALL 251
              K   L         + +    + R I  ++L+     A     +T+  +  + AL 
Sbjct: 302 NNLKTFPLKYDLNIEKLVKISKNMSGRDIKEKILKTALHHAISHDKETVDNKDVEYALK 360


>gi|148238398|ref|YP_001223785.1| DNA polymerase III gamma/tau subunit [Synechococcus sp. WH 7803]
 gi|147846937|emb|CAK22488.1| DNA polymerase III gamma/tau subunit [Synechococcus sp. WH 7803]
          Length = 621

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 84/221 (38%), Gaps = 19/221 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+ L++  GQ    + L   + + +         LF GP G GKT+ A+++AR L    
Sbjct: 13  RPQRLDQLVGQEAIAATLGHALRSGRIA----PAYLFSGPRGTGKTSSARILARSLNCLN 68

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P      +L   +      DV+ ID      +  +  ++E   +  ++      +
Sbjct: 69  SEGPTPEPCGHCELCTTIAAGTALDVIEIDAASNTGVDNIRDLIERSRFAPVQARWKVYV 128

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           V E             ++++    +   + ATT    +   +  R           +E L
Sbjct: 129 VDECHMLSTAAFNALLKTLEEPPPQVVFVLATTDPQRVLPTILSRCQ-RFDFRRIPLEAL 187

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           +  +   A+   + +  EA   +A R++G  R A  LL ++
Sbjct: 188 ERHLTWIAEQETIPIQPEALHVVAQRAQGGLRDAESLLDQL 228


>gi|46123299|ref|XP_386203.1| hypothetical protein FG06027.1 [Gibberella zeae PH-1]
          Length = 390

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 36/226 (15%), Positives = 74/226 (32%), Gaps = 13/226 (5%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
                   +   RP TL++ +G  +  + +  FIE        L H+L  GPPG GKT+ 
Sbjct: 37  EAEDSLPWVEKYRPTTLDDVSGHQDILATINKFIE-----QNRLPHLLLYGPPGTGKTST 91

Query: 71  AQVVAR------ELGVNFRSTSGPVIAKAGDLAALLTN-LEDRDVLFIDEIHRLSIIVEE 123
              +AR       +       +         +   +      + +  +    R    +  
Sbjct: 92  ILALARRIYGAANMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSLGGASRSGNGMAG 151

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
                +++        +    R ++   +             L+  L  R     R +  
Sbjct: 152 FKLIILDEADAMTSTAQMALRRIMEKYTTNTRFCIIANYSHKLSPALLSRC-TRFRFSPL 210

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           +  D++ +V +  +   + V  EA   +   S+G  R A  +L+  
Sbjct: 211 KEGDIRVLVDKVVEEENVQVKGEAIDALVKLSKGDMRRALNVLQAC 256


>gi|18395021|ref|NP_564148.1| emb1968 (embryo defective 1968); ATP binding / ATPase/ DNA binding
           / DNA clamp loader/ nucleoside-triphosphatase/
           nucleotide binding [Arabidopsis thaliana]
 gi|15810343|gb|AAL07059.1| putative replication factor [Arabidopsis thaliana]
 gi|17065122|gb|AAL32715.1| Similar replication factor C, 37-kDa subunit [Arabidopsis thaliana]
 gi|21536935|gb|AAM61276.1| putative replication factor [Arabidopsis thaliana]
 gi|34098857|gb|AAQ56811.1| At1g21690 [Arabidopsis thaliana]
 gi|332192018|gb|AEE30139.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
          Length = 339

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 49/244 (20%), Positives = 82/244 (33%), Gaps = 46/244 (18%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           ++  +      +   RP+ +++   Q E    L   ++ A        H+LF GPPG GK
Sbjct: 1   MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADC-----PHMLFYGPPGTGK 55

Query: 68  TTLAQVVAR-------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------- 106
           TT A  +A              EL  +       V  K  D AA+      R        
Sbjct: 56  TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPS 115

Query: 107 -DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
             ++ +DE   ++   +  L   ME +                  ++RF  I     +  
Sbjct: 116 FKIIILDEADSMTEDAQNALRRTMETYS----------------KVTRFFFIC--NYISR 157

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           +  PL  R     R      E +   +       GL++  EA   ++  S+G  R A   
Sbjct: 158 IIEPLASRCA-KFRFKPLSEEVMSNRILHICNEEGLSLDGEALSTLSSISQGDLRRAITY 216

Query: 226 LRRV 229
           L+  
Sbjct: 217 LQSA 220


>gi|325919111|ref|ZP_08181170.1| DNA polymerase III, subunit gamma/tau [Xanthomonas gardneri ATCC
           19865]
 gi|325550420|gb|EGD21215.1| DNA polymerase III, subunit gamma/tau [Xanthomonas gardneri ATCC
           19865]
          Length = 689

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 42/244 (17%), Positives = 75/244 (30%), Gaps = 53/244 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+   E  GQ      L   +++ +         LF G  G+GKTT+A++ A+ L    
Sbjct: 11  RPKRFSELVGQEHVVRALSNALDSGRVHHA----FLFTGTRGVGKTTIARIFAKSLNCET 66

Query: 83  ------------------------RSTSGPVIAKAGDLAALLTNLE------DRDVLFID 112
                                               D+  ++ N +         V  ID
Sbjct: 67  GTSADPCGTCPACLDIDAGRYIDLLEIDAASNTGVDDVREVIENAQYMPSRGKFKVYLID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS      L   +E+                         + ATT    L   +  
Sbjct: 127 EVHMLSKAAFNALLKTLEE------------------PPEHVKFLLATTDPQKLPVTVLS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R  +   L   + + ++  + R      +     A  +++  + G+ R    LL +   +
Sbjct: 169 RC-LQFNLKRLDEDQIQGQMTRILAAEQIESDPSAIVQLSKAADGSLRDGLSLLDQAIAY 227

Query: 233 AEVA 236
           A  A
Sbjct: 228 AGGA 231


>gi|312869732|ref|ZP_07729879.1| DNA polymerase III, subunit gamma and tau [Lactobacillus oris
           PB013-T2-3]
 gi|311094781|gb|EFQ53078.1| DNA polymerase III, subunit gamma and tau [Lactobacillus oris
           PB013-T2-3]
          Length = 601

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 58/302 (19%), Positives = 106/302 (35%), Gaps = 29/302 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+  +E  GQ      LK  I         + H  LF GP G GKT+ A++ A+ +  +
Sbjct: 11  RPQRFDELVGQQVVTQTLKNAI-----VTHQISHAYLFAGPRGTGKTSAAKIFAKAINCH 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDL 136
                 P    A  +   +T+ +  DV+ ID      +  +  I ++  Y   +      
Sbjct: 66  HLKDGEPCNECA--ICKAITHGQLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQADYKVY 123

Query: 137 MVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ++ E             ++++   +    I ATT    +   +  R            +D
Sbjct: 124 IIDEVHMLSTGAFNALLKTLEEPPANVVFILATTEPHKIPLTIISRVQ-RFDFRRISAQD 182

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA----EVAHAKTITR 243
               ++       +   ++A   IA  + G  R A  +L +V  F+    ++  A T+T 
Sbjct: 183 AYERMKYILDQKQVQYEEKALWVIANAAEGGMRDALSILDQVLSFSDNQVQLKDALTVTG 242

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
            +    L +   +       D   L  +      G  G   I   +S  RD +     P 
Sbjct: 243 SVTKQLLEKYFFEVTAHKSADA--LNTMKDILNAGKDGQRFIEDLISFIRDVLLYQESPQ 300

Query: 304 MI 305
           +I
Sbjct: 301 LI 302


>gi|166710949|ref|ZP_02242156.1| DNA polymerase III subunits gamma and tau [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 698

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 41/241 (17%), Positives = 74/241 (30%), Gaps = 53/241 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+   E  GQ      L   +++ +         LF G  G+GKTT+A++ A+ L    
Sbjct: 11  RPKRFAELVGQEHVVRALSNALDSGRVHHA----FLFTGTRGVGKTTIARIFAKSLNCET 66

Query: 83  ------------------------RSTSGPVIAKAGDLAALLTNLE------DRDVLFID 112
                                               D+  ++ N +         V  ID
Sbjct: 67  GTSADPCGQCPACLDIDAGRYIDLLEIDAASNTGVDDVREVIENAQYMPSRGKFKVYLID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS      L   +E+                         + ATT    L   +  
Sbjct: 127 EVHMLSKAAFNALLKTLEE------------------PPEHVKFLLATTDPQKLPVTVLS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R  +   L   + + ++  + R      +     A  +++  + G+ R    LL +   +
Sbjct: 169 RC-LQFNLKRLDEDQIQGQMTRILAAEQIESDPSAIVQLSKAADGSLRDGLSLLDQAIAY 227

Query: 233 A 233
           A
Sbjct: 228 A 228


>gi|114647199|ref|XP_001156404.1| PREDICTED: replication factor C subunit 5 isoform 3 [Pan
           troglodytes]
 gi|114647201|ref|XP_001156460.1| PREDICTED: replication factor C subunit 5 isoform 4 [Pan
           troglodytes]
          Length = 319

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 74/223 (33%), Gaps = 38/223 (17%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75
           +   RP+TL +     +  S ++ FI       + L H+L  GPPG GKT+     A   
Sbjct: 2   VEKYRPQTLNDLISHQDILSTIQKFI-----NEDRLPHLLLYGPPGTGKTSTILACAKQL 56

Query: 76  ---RELGVNFRSTSGPVIAKAGDLAA-LLTNLEDRDVL-------FIDEIHRLSIIVEEI 124
              +E G      +         +   +L+    R +         +DE   ++   +  
Sbjct: 57  YKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNA 116

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           L   +E F       E      +   LS+                LQ R     R     
Sbjct: 117 LRRVIEKF------TENTRFCLICNYLSKIIP------------ALQSRC-TRFRFGPLT 157

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
            E +   ++   +   + ++++    +   S G  R A  +L+
Sbjct: 158 PELMVPRLEHVVEEEKVGISEDGMKALVTLSSGDMRRALNILQ 200


>gi|242082974|ref|XP_002441912.1| hypothetical protein SORBIDRAFT_08g004780 [Sorghum bicolor]
 gi|241942605|gb|EES15750.1| hypothetical protein SORBIDRAFT_08g004780 [Sorghum bicolor]
          Length = 339

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 82/244 (33%), Gaps = 45/244 (18%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           ++  V      +   RPR +++   Q E    L   ++ A      L H+LF GPPG GK
Sbjct: 1   MAPLVPMSQPWVEKYRPRQVKDVAHQEEVIRVLTNTLQTAD-----LPHMLFYGPPGTGK 55

Query: 68  TTLAQVVAR-------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------- 106
           TT A  +A              EL  +       V  K  D AA+      +        
Sbjct: 56  TTTALAIAYQLYGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTARKAGYPCPPY 115

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
            ++ +DE   ++   +  L   ME +                  ++RF  I     +  +
Sbjct: 116 KIIILDEADSMTEDAQNALRRTMETYS----------------KVTRFFFIC--NYISRI 157

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
             PL  R     R      E +   +       GL +  +A   ++  S+G  R A   L
Sbjct: 158 IEPLVSRCA-KFRFKPLSEEVMSNRIMHICNEEGLNLDAQALSTLSAISQGDLRRAITYL 216

Query: 227 RRVR 230
           +   
Sbjct: 217 QSAA 220


>gi|134057264|emb|CAK96427.1| unnamed protein product [Aspergillus niger]
          Length = 388

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 47/259 (18%), Positives = 80/259 (30%), Gaps = 53/259 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR------ 76
           RP+TL++   Q      L+  ++A+      L H+LF GPPG GKT+    +A+      
Sbjct: 41  RPKTLDDVAAQDHTTKVLQRTLQAS-----NLPHMLFYGPPGTGKTSTILALAKSLFGPS 95

Query: 77  -------ELGVNFRSTSGPVIAKAGDLAALLTNLEDR--------------DVLFIDEIH 115
                  EL  +     G V  K  + A                        ++ +DE  
Sbjct: 96  LYRSRILELNASDERGIGIVREKIKNFARAQLTHSTGLGEEYLAQYPCPPFKIIILDEAD 155

Query: 116 RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA-TTRVGLLTNPLQDRF 174
            ++   +  L   ME +                   SR T        V  +  PL  R 
Sbjct: 156 SMTQDAQSALRRTMEQY-------------------SRITRFCLVCNYVTRIIEPLASRC 196

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
               R    +       ++  AK+  L + D    ++   S G  R A   ++       
Sbjct: 197 S-KFRFKALDNTAAGERLEHIAKVENLRLEDGVVDKLIACSEGDMRRAITYMQSAAKLVG 255

Query: 235 VAHAKTITREIADAALLRL 253
              A     +  +    + 
Sbjct: 256 AGRAGKKDEDEDEEMTDQE 274


>gi|294635357|ref|ZP_06713851.1| DNA polymerase III subunit tau [Edwardsiella tarda ATCC 23685]
 gi|291091244|gb|EFE23805.1| DNA polymerase III subunit tau [Edwardsiella tarda ATCC 23685]
          Length = 681

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 86/242 (35%), Gaps = 25/242 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 35  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 88

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D+L ID   R  +     L       PA   F++ L
Sbjct: 89  ETGITATPCGVCDNCREIEQGRFVDLLEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 148

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++        + ATT    L   +  R  +   L   + E +
Sbjct: 149 IDEVHMLSRHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSRC-LQFHLRALDHEQI 207

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  + + A+   LA    A   +A  + G+ R A  L+    D A       IT +    
Sbjct: 208 RAQLAKIAQAESLAADARALQLLARAAEGSMRDALSLM----DQAIAMGQGQITADAVSQ 263

Query: 249 AL 250
            L
Sbjct: 264 ML 265


>gi|242042039|ref|XP_002468414.1| hypothetical protein SORBIDRAFT_01g045530 [Sorghum bicolor]
 gi|241922268|gb|EER95412.1| hypothetical protein SORBIDRAFT_01g045530 [Sorghum bicolor]
          Length = 339

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 83/244 (34%), Gaps = 45/244 (18%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           ++  V      +   RPR +++   Q E    L   ++ A      L H+LF GPPG GK
Sbjct: 1   MAPLVPMSQPWVEKYRPRQVKDVAHQEEVIRVLTNTLQTAD-----LPHMLFYGPPGTGK 55

Query: 68  TTLAQVVAR-------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------- 106
           TT A  +A              EL  +       V  K  D AA+      +        
Sbjct: 56  TTTALAIAYQLYGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTARKAGYPCPPY 115

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
            ++ +DE   ++   +  L   ME +                  ++RF  I     +  +
Sbjct: 116 KIIILDEADSMTEDAQNALRRTMETYS----------------KVTRFFFIC--NYISRI 157

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
             PL  R     R      E + + +       GL +  +A   ++  S+G  R A   L
Sbjct: 158 IEPLASRCA-KFRFKPLSEEVMSSRIMHICNEEGLNLDAQALSTLSAISQGDLRRAITYL 216

Query: 227 RRVR 230
           +   
Sbjct: 217 QSAA 220


>gi|255554761|ref|XP_002518418.1| 26S protease regulatory subunit, putative [Ricinus communis]
 gi|223542263|gb|EEF43805.1| 26S protease regulatory subunit, putative [Ricinus communis]
          Length = 587

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 52/231 (22%), Positives = 88/231 (38%), Gaps = 17/231 (7%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA---------GDLAALLTNLEDRD 107
           VLF GPPG GKT+ A+V+A + GV        V+            G + AL   L +  
Sbjct: 350 VLFEGPPGTGKTSCARVIATQAGVPLLYVPLEVVMSKYYGESEKLLGKVFALANELPNGA 409

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           ++F+DE+   ++  +  ++ A     L +++ +       K    +  +IAAT R   L 
Sbjct: 410 IIFLDEVDSFAVARDNEMHEATRRI-LSVLLRQIDGFEQDK----KVVVIAATNRKQDLD 464

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             L  RF   I     + ++ + IV + AK    +  +E A      S    +   +   
Sbjct: 465 PALISRFDSMITFGLPDEQNRQEIVAQYAKHLKRSDIEELAKVTDQMSGRDIKDVCQQAE 524

Query: 228 RVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
           R      +        E  +   L   I+      +  + L  IA    GG
Sbjct: 525 RSWASKIIRGKADRDGEQGNLPTLSEYIESA---LIRRQALLSIADQRSGG 572


>gi|57234625|ref|YP_181327.1| DNA polymerase III, gamma and tau subunits, putative
           [Dehalococcoides ethenogenes 195]
 gi|57225073|gb|AAW40130.1| DNA polymerase III, gamma and tau subunits, putative
           [Dehalococcoides ethenogenes 195]
          Length = 559

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 83/240 (34%), Gaps = 54/240 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+TL +  GQ      LK  + + +         LF GP G GKT+  +++A+ +    
Sbjct: 11  RPQTLADLVGQEHVAHTLKNALSSGRIAQAY----LFCGPRGTGKTSTGRILAKAVNCTT 66

Query: 83  RSTSGP------------------VIA-------KAGDLAALLTNLE------DRDVLFI 111
               G                   VI           D+  L   ++      +  V  I
Sbjct: 67  NQGKGEPCNTCPMCLSITEGSSMDVIEIDAASNTGVDDIRELKEKVQYAPALANYKVYII 126

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                     R   I ATT +  +   + 
Sbjct: 127 DEVHMLSNSASNALLKTLEE------------------PPPRVIFILATTEIHKVLPTIM 168

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R       +   + D+   +++ ++  G+ +  EA   IA  + G+ R    LL+++  
Sbjct: 169 SRCQ-RFDFHRVSLSDMSRKLEKISQAEGINIEPEALKLIARSAGGSFRDGENLLQQIAT 227


>gi|254521543|ref|ZP_05133598.1| DNA polymerase III, tau and gamma subunit [Stenotrophomonas sp.
           SKA14]
 gi|219719134|gb|EED37659.1| DNA polymerase III, tau and gamma subunit [Stenotrophomonas sp.
           SKA14]
          Length = 683

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 42/241 (17%), Positives = 75/241 (31%), Gaps = 53/241 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN- 81
           RP+   E  GQ      L   +++ +         LF G  G+GKTT+A++ A+ L    
Sbjct: 17  RPKRFAELVGQEHVVRALSNALDSGRVHHA----FLFTGTRGVGKTTIARIFAKSLNCEQ 72

Query: 82  -----------------------FRSTSGPVIAKAGDLAALLTNLE------DRDVLFID 112
                                               D+  ++ N +         V  +D
Sbjct: 73  GTSADPCGQCAACLDIDAGRYIDLLEIDAASNTGVDDVREVIENAQYMPSRGKYKVYLVD 132

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS      L   +E+                         + ATT    L   +  
Sbjct: 133 EVHMLSKAAFNALLKTLEE------------------PPEHVKFLLATTDPQKLPVTVLS 174

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R  +   L   + + ++  + R      +   D A  ++A  + G+ R    LL +   +
Sbjct: 175 RC-LQFNLKRLDEDQIQGQMTRILAAEDIEADDSAIVQLAKAADGSLRDGLSLLDQAIAY 233

Query: 233 A 233
           A
Sbjct: 234 A 234


>gi|157693223|ref|YP_001487685.1| ATP-dependent protease [Bacillus pumilus SAFR-032]
 gi|157681981|gb|ABV63125.1| ATP-dependent protease [Bacillus pumilus SAFR-032]
          Length = 553

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 57/282 (20%), Positives = 94/282 (33%), Gaps = 56/282 (19%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +     +RP+  ++  GQ +    LK     A        HV+  GPPG+GKT  A++V 
Sbjct: 57  EPLSERVRPKGFQDIVGQEDGIRALK-----AALCGPNPQHVIVYGPPGVGKTAAARLVM 111

Query: 76  RELGVNFRSTSG----------------------PVIAKAGD-----------------L 96
            E   +  S                         P+I    D                  
Sbjct: 112 EEAKRHADSPFKKDAVFVELDATTARFDERGIADPLIGSVHDPIYQGAGAMGQAGIPQPK 171

Query: 97  AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL----MVGEGPSARSVKINL- 151
              +T+     VLFIDEI  L  I    +   +ED ++ L       E     +   ++ 
Sbjct: 172 QGAVTHAHGG-VLFIDEIGELHPIQMNKMLKVLEDRKVFLDSAYYSEENTQIPNHIHDIF 230

Query: 152 -----SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDE 206
                + F LI ATTR      P      + I     +  +LK +  +  +     ++DE
Sbjct: 231 QNGLPADFRLIGATTRTPDEIPPAIRSRCLEIFFKDLDQHELKIVAAKAVQKIQKELSDE 290

Query: 207 AACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
               +    +   R A  +++     A   + K IT E  + 
Sbjct: 291 GLNLLTSYVKN-GREAVNMVQIAAGMAVTENRKDITIEDVEW 331


>gi|124026832|ref|YP_001015947.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus
           str. NATL1A]
 gi|123961900|gb|ABM76683.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus
           str. NATL1A]
          Length = 565

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 88/228 (38%), Gaps = 19/228 (8%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +      RP + +E  GQ    S LK  + + +         +F GP G GKT+ A++ A
Sbjct: 6   EPLHHKYRPTSFDELVGQDPIKSTLKQALISDRIA----PAYIFSGPRGTGKTSSARIFA 61

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAME 130
           + L       +        +L   +++    DV+ ID      +  +  ++E   +   +
Sbjct: 62  KSLNCLKSEKATTTPCGQCELCKGISSGNALDVIEIDAASNTGVENIRELIERSRFAPAK 121

Query: 131 DFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
                 ++ E             ++++    +   I ATT    +   +  R  +     
Sbjct: 122 ARWKVYVIDECHMLSTAAFNALLKTLEEPPRQVVFILATTDPQRVLPTILSRC-MRFDFR 180

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
              + DL++ + + AK   + + +EA   IA  S+G  R A  LL +V
Sbjct: 181 RIALHDLESHLIKIAKKEEIQINEEAISLIAKHSQGGLRDAESLLDQV 228


>gi|257076223|ref|ZP_05570584.1| replication factor C small subunit [Ferroplasma acidarmanus fer1]
          Length = 318

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 55/291 (18%), Positives = 97/291 (33%), Gaps = 42/291 (14%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +      RP  L +  G      N+      A  + + + H++F GP G GKT+ A  +A
Sbjct: 3   NIWTEKYRPSKLSDVIG---EKGNINRL--NAYVKDKNIPHLIFAGPQGTGKTSTAIALA 57

Query: 76  -----RELGVNFRSTSGPVIAKAGDLAALLTNLED--------RDVLFIDEIHRLSIIVE 122
                     NF   +         +   + N             ++F+DE   L+   +
Sbjct: 58  ISLFGDSWKENFMELNASNDRGIDIIRDNIKNFAKIRPSNDLGFKIIFLDEADHLTGDAQ 117

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             L   ME F                 N +RF    +      +  P+Q R  + +R   
Sbjct: 118 AALRRTMEMFY----------------NTTRFIF--SCNYSSKIIPPIQSRC-VVLRFKP 158

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            + E +K  ++  AK     + D++   I   S G  R A  +L+ V+   +V+      
Sbjct: 159 IDRESMKNRLKDIAKKENFEIDDDSLDAIYEISDGDMRKAVNVLQAVKLSGKVSATAIYE 218

Query: 243 REIADAALLRLAIDKMGFDQL---DLRYLTMIARNFGGGPVGIETISAGLS 290
                       +  M  +        YL  +  ++  G  GI+ I    S
Sbjct: 219 ISGEINRDEYKNLINMAIEGNFNDARNYLDKMLIDY--GLSGIDIIKGMHS 267


>gi|325912930|ref|ZP_08175304.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners UPII
           60-B]
 gi|325477744|gb|EGC80882.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners UPII
           60-B]
          Length = 583

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 49/265 (18%), Positives = 97/265 (36%), Gaps = 22/265 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPRT E   GQ   C  L+     +  R +     LF GP G GKT+ A++ A+ +    
Sbjct: 11  RPRTFEAVVGQSAICDTLR----NSIKRHKISHAFLFSGPRGTGKTSCAKIFAKAINCMD 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P    +  LAA    L   D++ ID      +  +  I +++ Y   + +    +
Sbjct: 67  SKDGEPCNQCSNCLAADKGIL--NDIIEIDAASNNGVDEIRAIRDKVKYAPTQGYYKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT +  +   +  R            + L
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRI-SNDQL 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              ++       +A  +++   IA  + G  R +  +L ++  + +       T  I   
Sbjct: 184 VARMKFILDQEKIAYDEKSLQVIAQVADGGMRDSLSILDQILSYDQAKINYQDTLAITGY 243

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIAR 273
           A  ++ I+ +  D L+ +    +  
Sbjct: 244 A-DQVKIEALFLDLLNKKTSQALEE 267


>gi|194017308|ref|ZP_03055920.1| ATP-dependent protease LonB [Bacillus pumilus ATCC 7061]
 gi|194011176|gb|EDW20746.1| ATP-dependent protease LonB [Bacillus pumilus ATCC 7061]
          Length = 553

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 57/282 (20%), Positives = 94/282 (33%), Gaps = 56/282 (19%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +     +RP+  ++  GQ +    LK     A        HV+  GPPG+GKT  A++V 
Sbjct: 57  EPLSERVRPKGFQDIVGQEDGIRALK-----AALCGPNPQHVIVYGPPGVGKTAAARLVM 111

Query: 76  RELGVNFRSTSG----------------------PVIAKAGD-----------------L 96
            E   +  S                         P+I    D                  
Sbjct: 112 EEAKRHADSPFKKDAVFVELDATTARFDERGIADPLIGSVHDPIYQGAGAMGQAGIPQPK 171

Query: 97  AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL----MVGEGPSARSVKINL- 151
              +T+     VLFIDEI  L  I    +   +ED ++ L       E     +   ++ 
Sbjct: 172 QGAVTHAHGG-VLFIDEIGELHPIQMNKMLKVLEDRKVFLDSAYYSEENTQIPNHIHDIF 230

Query: 152 -----SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDE 206
                + F LI ATTR      P      + I     +  +LK +  +  +     ++DE
Sbjct: 231 QNGLPADFRLIGATTRTPDEIPPAIRSRCLEIFFKDLDQHELKIVAAKAVQKIQKELSDE 290

Query: 207 AACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
               +    +   R A  +++     A   + K IT E  + 
Sbjct: 291 GLNLLTSYVKN-GREAVNMVQIAAGMAVTENRKDITIEDVEW 331


>gi|160914821|ref|ZP_02077035.1| hypothetical protein EUBDOL_00829 [Eubacterium dolichum DSM 3991]
 gi|158433361|gb|EDP11650.1| hypothetical protein EUBDOL_00829 [Eubacterium dolichum DSM 3991]
          Length = 593

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 81/225 (36%), Gaps = 22/225 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP + +E  GQ      L+  +E  K         LF GP G GKT++A++ A+ +    
Sbjct: 17  RPNSFDEVAGQKHIVKTLQNAVEQNKIAHAY----LFCGPRGTGKTSIAKIFAKVINCES 72

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
           +     +     D    + N    D++ ID      +  +  ++E++ Y  ++      +
Sbjct: 73  KEHKPCLQC---DNCLAVQNGSHPDIIEIDAASNNGVEEVRNLIEKVKYAPLKGKYKVYI 129

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT    +   +  R          + E +
Sbjct: 130 IDEVHMMSAGAFNALLKTIEEPPEHVIFILATTEPHKVLPTIISRCQRFDFTKVPKNEIV 189

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
             I     +   +   D+    IA  + G  R A  +L +   +A
Sbjct: 190 SRIHT-ILEKEHIECDDDVIELIAQLADGGLRDALSILDQCIAYA 233


>gi|159041491|ref|YP_001540743.1| replication factor C large subunit [Caldivirga maquilingensis
           IC-167]
 gi|157920326|gb|ABW01753.1| AAA ATPase central domain protein [Caldivirga maquilingensis
           IC-167]
          Length = 418

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 79/232 (34%), Gaps = 25/232 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                 RPR+L++   Q E    ++ +I    +  E    +L  GPPG GKTT+   +A 
Sbjct: 7   PWFEKYRPRSLKDIVNQEEVKKTMEDWISKWLSGKEK-RAILLSGPPGTGKTTMVHALAY 65

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL--------EDRDVLFIDEIHRLSIIVEEILYPA 128
           + G+     +   +  A  +   +               ++  DE+  +++         
Sbjct: 66  DYGLELYEMNASDVRTASRIRETIGKALTQGSLFGFRGKLVLFDEVDGINVR-------- 117

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
            +   +  +V     A+           + A         PL+D   +         + +
Sbjct: 118 ADQGGIYEIVDIVKEAKVP-------IAMTANDPWDPKLRPLRDICVVVQVKPLKNRDII 170

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
             +++R      +   ++A   IA  S G  R A   L+ V +   V   + 
Sbjct: 171 -EMLRRICNAEKVKCEEDALRLIAESSMGDMRSAINDLQTVAETGPVTRERV 221


>gi|112982853|ref|NP_001036917.1| replication factor C subunit 2 [Bombyx mori]
 gi|54290087|dbj|BAD61055.1| RFC40 [Bombyx mori]
          Length = 340

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 80/233 (34%), Gaps = 38/233 (16%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           S + S     I   RP+T ++  G  +  S L VF +   A      +++  GPPG+GKT
Sbjct: 14  SSSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNA-----PNIIIAGPPGVGKT 68

Query: 69  TLAQVVAR------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEI 114
           T    +AR            EL  +       V  K    A     L      ++ +DE 
Sbjct: 69  TTILCLARVLLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEA 128

Query: 115 HRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRF 174
             ++   ++ L   ME +                   S      A      +  P+Q R 
Sbjct: 129 DSMTDGAQQALRRTMELYS------------------STTRFALAANNSEKIIEPIQSRC 170

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
            +       + + L  +++       L+ T+E    +   ++G  R A   L+
Sbjct: 171 AVLRYSRLSDAQILAKVIE-ICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQ 222


>gi|312136506|ref|YP_004003843.1| ATPase AAA [Methanothermus fervidus DSM 2088]
 gi|311224225|gb|ADP77081.1| AAA ATPase central domain protein [Methanothermus fervidus DSM
           2088]
          Length = 372

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 57/242 (23%), Positives = 91/242 (37%), Gaps = 19/242 (7%)

Query: 26  TLEEFTGQVEACSNLKVFIEAA----KARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
            + +  GQ  A    KV ++      K    A  ++LF G PG GKT LA+ ++ E+ V 
Sbjct: 124 KIADVVGQERAKMKCKVIMKYLENPEKFSGWAPRNILFYGAPGTGKTMLAKSLSNEVNVP 183

Query: 82  FRSTSGPVI--AKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQ 133
                   +     GD A  +  L D        ++FIDEI  + +  +           
Sbjct: 184 LYLVKATSLIGEHVGDGARQIHELYDLACETSPSIVFIDEIDAIGLSRKYQSLRGDVSEV 243

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           +  ++ E    +  +        IAAT    LL   ++ RF   I       E+ K +++
Sbjct: 244 VSALLTEMDGIKENEG----VVTIAATNNPSLLDPAIRSRFEEEIEFTLPSKEERKEMIK 299

Query: 194 RGAKLTGLAVT--DEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           R  K   L VT       E++    G   I  +LL+     A V + K I  +    AL 
Sbjct: 300 RHIKTMPLPVTVSPNKLAELSKGMSGR-DIKEKLLKTALHKAIVDNDKKIENKHIKYALE 358

Query: 252 RL 253
             
Sbjct: 359 HY 360


>gi|195384914|ref|XP_002051157.1| GJ14606 [Drosophila virilis]
 gi|194147614|gb|EDW63312.1| GJ14606 [Drosophila virilis]
          Length = 332

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 74/238 (31%), Gaps = 38/238 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP  L++     E  S +  FI       + L H+LF GPPG GKT+     AR
Sbjct: 12  PWVEKYRPNCLDDLISHEEIISTINRFI-----NQKQLPHLLFYGPPGTGKTSTILACAR 66

Query: 77  ------ELGVNFRSTSGPVIAKAGDLA-ALLTNLEDRDVLF-------IDEIHRLSIIVE 122
                          +       G +   +L     R +         +DE   ++   +
Sbjct: 67  QLYSPAHFKSMVLELNASDDRGIGIVRGQILNFASTRTIFCGTFKLIILDEADAMTNDAQ 126

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             L   +E +       E      +   LS+                LQ R     R   
Sbjct: 127 NALRRIIEKY------TENVRFCVICNYLSKIIP------------ALQSRC-TRFRFAP 167

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
              E +   + +  +   + VTD+    +   ++G  R    +L+      ++ +   
Sbjct: 168 LSPEQMLPRLNKVIQEENVNVTDDGKNALLTLAKGDMRKVLNVLQSTSMAFDIVNEDN 225


>gi|78046683|ref|YP_362858.1| DNA polymerase III subunits gamma and tau [Xanthomonas campestris
           pv. vesicatoria str. 85-10]
 gi|78035113|emb|CAJ22758.1| DNA polymerase III tau and gamma subunits [Xanthomonas campestris
           pv. vesicatoria str. 85-10]
          Length = 683

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 41/241 (17%), Positives = 74/241 (30%), Gaps = 53/241 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+   E  GQ      L   +++ +         LF G  G+GKTT+A++ A+ L    
Sbjct: 11  RPKRFAELVGQEHVVRALSNALDSGRVHHA----FLFTGTRGVGKTTIARIFAKSLNCET 66

Query: 83  ------------------------RSTSGPVIAKAGDLAALLTNLE------DRDVLFID 112
                                               D+  ++ N +         V  ID
Sbjct: 67  GTSADPCGTCPACLDIDAGRYIDLLEIDAASNTGVDDVREVIENAQYMPSRGKFKVYLID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS      L   +E+                         + ATT    L   +  
Sbjct: 127 EVHMLSKAAFNALLKTLEE------------------PPEHVKFLLATTDPQKLPVTVLS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R  +   L   + + ++  + R      +     A  +++  + G+ R    LL +   +
Sbjct: 169 RC-LQFNLKRLDEDQIQGQMTRILAAEQIESDPSAIVQLSKAADGSLRDGLSLLDQAIAY 227

Query: 233 A 233
           A
Sbjct: 228 A 228


>gi|238754273|ref|ZP_04615630.1| DNA polymerase III subunit gamma [Yersinia ruckeri ATCC 29473]
 gi|238707520|gb|EEP99880.1| DNA polymerase III subunit gamma [Yersinia ruckeri ATCC 29473]
          Length = 648

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 86/228 (37%), Gaps = 25/228 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  E  GQ    + L        +        LF G  G+GKT++A+++A+ L    
Sbjct: 11  RPQTFAEVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCET 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILY------PAMEDFQL 134
             T+ P     G  A  L   + R  D++ ID   R  +     L       PA   F++
Sbjct: 67  GITATP----CGKCANCLEIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKV 122

Query: 135 DLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            L+               ++++   S    + ATT    L   +  R  +   L   ++E
Sbjct: 123 YLIDEVHMLSRHSFNALLKTLEEPPSHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVE 181

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
            ++T +++  +   +     A   +A  + G+ R A  L  +     +
Sbjct: 182 QIRTQLEKVLQAEQIDSDARALQLLARAADGSMRDALSLTDQAVSMGQ 229


>gi|154490847|ref|ZP_02030788.1| hypothetical protein PARMER_00764 [Parabacteroides merdae ATCC
           43184]
 gi|154088595|gb|EDN87639.1| hypothetical protein PARMER_00764 [Parabacteroides merdae ATCC
           43184]
          Length = 606

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 81/228 (35%), Gaps = 20/228 (8%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T     GQ    + LK  I++ K         LF GP G+GKT+ A++ A+ +
Sbjct: 8   ARKYRPSTFRSVVGQKSLTTTLKNAIQSNKLAHAY----LFCGPRGVGKTSCARIFAKTI 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI------IVEEILYPAMEDF 132
                +  G    +     A        ++  +D     S+      I +  + P +  +
Sbjct: 64  NCLNPTADGEACNECESCKA-FNEQRSYNIHELDAASNNSVDDIRALIDQVRIPPPIGKY 122

Query: 133 QLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           ++ ++               ++++        I ATT    +   +  R  I        
Sbjct: 123 KVFIIDEVHMLSSAAFNAFLKTLEEPPHHALFILATTEKHKVLPTILSRCQIYDFSRI-S 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           I D+   ++  +   G+    EA   IA ++ G  R A  +  +V  F
Sbjct: 182 IADMVEHLEYVSSCEGVTAEPEALNVIAQKADGGMRDALSIFDQVVSF 229


>gi|148241162|ref|YP_001226319.1| DNA polymerase III gamma/tau subunit [Synechococcus sp. RCC307]
 gi|147849472|emb|CAK26966.1| DNA polymerase III gamma/tau subunit [Synechococcus sp. RCC307]
          Length = 604

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 83/228 (36%), Gaps = 19/228 (8%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +      RP+  ++  GQ    + L   ++    R       LF GP G GKT+ A+++A
Sbjct: 4   EPLHHKYRPQRFDQLVGQEAIAATLSQALQ----RGRIAPAYLFSGPRGTGKTSSARILA 59

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAME 130
           R L                +L   +      DV+ ID      +  +  ++E   +  ++
Sbjct: 60  RSLNCLSSDGPTAEPCGTCELCTAIAAGGALDVIEIDAASNTGVDNIRDLIERSRFAPVQ 119

Query: 131 DFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
                 +V E             ++++    R   + ATT    +   +  R        
Sbjct: 120 ARWKVYVVDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTILSRCQ-RFDFR 178

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
              ++ L+  +   A+   + +T EA   +A  ++G  R A  LL ++
Sbjct: 179 RIPLQALEQHLLWIAEQEAINITPEAVHLVAQLAQGGLRDAESLLDQL 226


>gi|72390425|ref|XP_845507.1| replication factor C, subunit 2 [Trypanosoma brucei TREU927]
 gi|62360360|gb|AAX80776.1| replication factor C, subunit 2, putative [Trypanosoma brucei]
 gi|70802042|gb|AAZ11948.1| replication factor C, subunit 2, putative [Trypanosoma brucei
           brucei strain 927/4 GUTat10.1]
 gi|261328911|emb|CBH11889.1| replication factor C, subunit 2, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 347

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 54/279 (19%), Positives = 90/279 (32%), Gaps = 61/279 (21%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             I   RP++L+E   Q E    L+  +     +  ++ H LF GPPG GKTT    VA 
Sbjct: 20  PWIEKYRPKSLDEVKSQEEVVQALRSTLR----QGASMPHFLFHGPPGTGKTTAILAVAH 75

Query: 77  E------LGVNFRSTSGPVIAKAGDLAALLTNLED---------------------RDVL 109
           E      +    R  +         +   + +                          V+
Sbjct: 76  ELFGPDYIKSRVRELNASDDRGIQVIREKVKSFAQTAVGNVVQKVQSDGKIYPVPPFKVI 135

Query: 110 FIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
            +DE   L    +  L   MEDF                 +++RF        V  + +P
Sbjct: 136 ILDEADALLPDAQAALRRMMEDFS----------------DVTRF--CILCNYVTRIIDP 177

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           +  R     R      E L   +   A    + ++  +   +   S G  R+A   L+  
Sbjct: 178 IASRCA-KYRFKPLIKEALYERISEVASRENIQISRSSIDALDHVSGGDLRLAIMYLQYA 236

Query: 230 ----------RDFAEVAHAKTITREIAD-AALLRLAIDK 257
                      DF EV+ +   +      AAL+  + D+
Sbjct: 237 QRANGNDLQKEDFVEVSGSVPASMMQTYLAALMMKSFDE 275


>gi|222152178|ref|YP_002561338.1| DNA polymerase III gamma and tau subunits homolog [Macrococcus
           caseolyticus JCSC5402]
 gi|222121307|dbj|BAH18642.1| DNA polymerase III gamma and tau subunits homolog [Macrococcus
           caseolyticus JCSC5402]
          Length = 546

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 92/246 (37%), Gaps = 27/246 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A   + R ++ EE  GQ    + LK  I+  K     + H  LF GP G GKT++A++ A
Sbjct: 5   ALYRVFRSQSFEEVVGQKHVTTTLKNAIQKNK-----ISHAYLFNGPRGTGKTSIAKIFA 59

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAME 130
           + +     +   P  +   D    +T   + DV+ ID      +  +  I +++ Y   E
Sbjct: 60  KAINCTVSTDGEPCNSC--DTCVSITKGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPGE 117

Query: 131 DFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
                 ++ E             ++++   +    I ATT    +   +  R        
Sbjct: 118 STYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAVFILATTEPHKVPATIISRCQ-RFDFK 176

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
              + D+   +    +  G+   + A   IA  + G  R A  +L    D A     +T+
Sbjct: 177 AISVNDIAEHLAYVCRTEGIKYDEGALNFIATTAEGGMRDALSIL----DQAIAFGTETL 232

Query: 242 TREIAD 247
           T E   
Sbjct: 233 TLEHVH 238


>gi|168039290|ref|XP_001772131.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162676594|gb|EDQ63075.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 769

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 58/252 (23%), Positives = 91/252 (36%), Gaps = 21/252 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE-------ALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++F GQ      L+  ++  K   E           VL  GPPG GKT LA+ +A E 
Sbjct: 230 TFDDFAGQEYVKRELQEVVKILKDSKEFEDLGIYCPKGVLLYGPPGTGKTLLAKAIAGEA 289

Query: 79  GVNFRSTSGPVIAK------AGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG    +      A  +  L T        ++FIDEI  +             
Sbjct: 290 GVPFFSASGAEFVEMFVGVAAARVRDLFTRARQFAPSIVFIDEIDAIGAKRGGPDVGGGG 349

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
             +   ++         +   S+  ++ AT R+ +L   L    RF   I +     E  
Sbjct: 350 VEREQGLIQILTELDGFQSQGSKVLVVGATNRLDMLDPALLRKGRFDKTISIGLPSEEGR 409

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV----AHAKTITRE 244
             I+Q  ++  G     E    +   +  T   +G  L+ V + A +         I + 
Sbjct: 410 LAILQVHSRNKGFKSEKEKQELLKELASITFDYSGAELQNVLNEAAILAARKDKDIIEKP 469

Query: 245 IADAALLRLAID 256
               A+ R A D
Sbjct: 470 EIMEAIRRQAGD 481


>gi|238853617|ref|ZP_04643986.1| DNA polymerase III subunit gamma/tau [Lactobacillus gasseri 202-4]
 gi|238833761|gb|EEQ26029.1| DNA polymerase III subunit gamma/tau [Lactobacillus gasseri 202-4]
          Length = 602

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 80/228 (35%), Gaps = 21/228 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPRT +   GQ      LK  I     R +     LF GP G GKT+ A++ A+ L    
Sbjct: 11  RPRTFDGVVGQTAITDTLKNAI----KRGKISHAFLFAGPRGTGKTSCAKIFAKALNCTN 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P       LAA    +   D++ ID      +  +  I +++ Y   +      +
Sbjct: 67  LQDGEPCNECENCLAADKGTM--NDIIEIDAASNNGVDEIRDIRDKVKYAPTQGKYKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT +  +   +  R          + + +
Sbjct: 125 IDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRIDQHDLI 184

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
              +        +   ++A   IA  + G  R +  +L ++  + +  
Sbjct: 185 AR-MTYILGQEKIDFEEKALEVIAQVADGGMRDSLSILDQILSYDQDK 231


>gi|123967081|ref|YP_001012162.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus
           str. MIT 9515]
 gi|123201447|gb|ABM73055.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus
           str. MIT 9515]
          Length = 595

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 43/214 (20%), Positives = 70/214 (32%), Gaps = 19/214 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP  L+E  GQ      LK  + + K         LF GP G GKT+ A++ A+ L    
Sbjct: 13  RPSNLDELVGQEFISITLKQALISKKIA----PAYLFNGPRGTGKTSSARIFAKSLNCLS 68

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIH--------------RLSIIVEEILYPA 128
                       +L   + +    D++ ID                 R +          
Sbjct: 69  CEQPTANPCGKCELCKQIADGNALDIIEIDAASNTGVDNIREIIDGARFTPTQARWKVYV 128

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +++  +          ++++    R   I ATT    + N +Q R              +
Sbjct: 129 IDECHMLSTAASNALLKTIEEPPERVVFILATTNPERVINTIQSRCQ-KFDFKRISSNTI 187

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
              +   A    +   D+A   IA RS G  R A
Sbjct: 188 FHNLSEIANKESIKFEDQALKLIAKRSNGGMRDA 221


>gi|121705176|ref|XP_001270851.1| DNA replication factor C subunit Rfc2, putative [Aspergillus
           clavatus NRRL 1]
 gi|119398997|gb|EAW09425.1| DNA replication factor C subunit Rfc2, putative [Aspergillus
           clavatus NRRL 1]
          Length = 391

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 51/268 (19%), Positives = 82/268 (30%), Gaps = 62/268 (23%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+TL++   Q      L+  ++A+      L H+LF GPPG GKT+    +A+
Sbjct: 37  PWVEKYRPKTLDDVAAQDHTTKVLQRTLQAS-----NLPHMLFYGPPGTGKTSTILALAK 91

Query: 77  -------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD---------------- 107
                        EL  +     G V  K    A   T L                    
Sbjct: 92  SLFGPALYRSRILELNASDERGIGIVREKIKGFA--RTQLSQPTGLDSSYFEQYPCPPFK 149

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA-TTRVGLL 166
           ++ +DE   ++   +  L   ME +                   SR T        V  +
Sbjct: 150 IIILDEADSMTQDAQSALRRTMEQY-------------------SRITRFCLVCNYVTRI 190

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
             PL  R     R    +       ++  A+   L + D    ++     G  R A   +
Sbjct: 191 IEPLASRCS-KFRFKPLDNSAAGERLKSIAEQENLNLEDGVIEKLISCGEGDLRRAITYM 249

Query: 227 RRVRDF-----AEVAHAKTITREIADAA 249
           +          A          E+ADA 
Sbjct: 250 QSAARLVGVGRAAAPKDGDEDSEMADAG 277


>gi|104780939|ref|YP_607437.1| DNA polymerase III subunits gamma and tau [Pseudomonas entomophila
           L48]
 gi|95109926|emb|CAK14631.1| DNA polymerase III, tau and gamma subunits [Pseudomonas entomophila
           L48]
          Length = 684

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 66/327 (20%), Positives = 94/327 (28%), Gaps = 65/327 (19%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPR+  E  GQ      LK  I A     + L H  LF G  G+GKTT+A+++A+ L   
Sbjct: 11  RPRSFREMVGQTHV---LKALINA--LDNQRLHHAYLFTGTRGVGKTTIARIIAKCLNCE 65

Query: 82  FRSTS------------------------GPVIAKAGDLAALLTNLE------DRDVLFI 111
              TS                             K  D   LL N++         V  I
Sbjct: 66  TGITSTPCGTCSVCREIDEGRFVDLIEIDAASRTKVEDTRELLDNVQYAPSRGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         I ATT    L   + 
Sbjct: 126 DEVHMLSTHSFNALLKTLEE------------------PPPYVKFILATTDPQKLPATIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L     E +   +        +   D+A   +   + G+ R A  L     D
Sbjct: 168 SRC-LQFSLKNMSPERVVEHLSHVLGAENVPFEDDALWLLGRAADGSMRDAMSL----TD 222

Query: 232 FAEVAHAKTITREIADAAL-LRLAIDKMG-----FDQLDLRYLTMIARNFGGGPVGIETI 285
            A       +      A L         G      +      L  +      GP     +
Sbjct: 223 QAIAFGEGKVLAADVRAMLGTLDHGQVYGVLQALLEGDARALLEAVRDLAEQGPDWNGVL 282

Query: 286 SAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           S  L+           P  +  G   R
Sbjct: 283 SEMLNVLHRVAIAQALPEAVDNGQGDR 309


>gi|312870907|ref|ZP_07731012.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners LEAF
           3008A-a]
 gi|311093597|gb|EFQ51936.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners LEAF
           3008A-a]
          Length = 583

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 49/265 (18%), Positives = 97/265 (36%), Gaps = 22/265 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPRT E   GQ   C  L+     +  R +     LF GP G GKT+ A++ A+ +    
Sbjct: 11  RPRTFEAVVGQSAICDTLR----NSIKRHKISHAFLFSGPRGTGKTSCAKIFAKAINCMD 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P    +  LAA    L   D++ ID      +  +  I +++ Y   + +    +
Sbjct: 67  SKDGEPCNQCSNCLAADKGIL--NDIIEIDAASNNGVDEIRAIRDKVKYAPTQGYYKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT +  +   +  R            + L
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRI-SNDQL 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              ++       +A  +++   IA  + G  R +  +L ++  + +       T  I   
Sbjct: 184 VARMKFILDQEKIAYDEKSLQVIAQVADGGMRDSLSILDQILSYDQAKINYQDTLAITGY 243

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIAR 273
           A  ++ I+ +  D L+ +    +  
Sbjct: 244 A-DQVKIEALFLDLLNKKTSQALEE 267


>gi|317047210|ref|YP_004114858.1| DNA polymerase III subunits gamma and tau [Pantoea sp. At-9b]
 gi|316948827|gb|ADU68302.1| DNA polymerase III, subunits gamma and tau [Pantoea sp. At-9b]
          Length = 650

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 57/306 (18%), Positives = 109/306 (35%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+   +  GQ    + L        +        LF G  G+GKT++A+++A+ L    
Sbjct: 11  RPQAFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCET 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
             TS P      D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 67  GITSTP--CGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++   S    + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPSHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++   +   +A    A   +A  + G+ R A  L     D A      ++TRE    
Sbjct: 184 RQQLEHILQQEQIAAEPRALQLLARAAEGSMRDALSL----TDQAIAMGQGSVTRESVAQ 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L       D+  L  +  ++   G   + + + +A      +A+   +   + +  
Sbjct: 240 MLGTLD------DEQPLALIEALSDGNGEQVMALLSQAASRGVEWEALLVEMLRLLHRIA 293

Query: 309 FIQRTP 314
            +Q  P
Sbjct: 294 MVQLLP 299


>gi|262041601|ref|ZP_06014797.1| DNA polymerase III [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|259041074|gb|EEW42149.1| DNA polymerase III [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
          Length = 361

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 53/317 (16%), Positives = 108/317 (34%), Gaps = 31/317 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++   +    + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +A    A   ++  + G+ R A  L     D A  +    +T      
Sbjct: 184 RHQLEHILGEEQIAFEPRALQLLSRAADGSLRDALSL----TDQAIASGEGQLTAASVST 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L  D+       L  +  +    G   +     +A      +A+   ++  + +  
Sbjct: 240 MLGTLDDDQA------LSLIEALVAADGERVMAGVNDAAARGVEWEALLVEMQSLLHRIA 293

Query: 309 FIQRTPRGRLLMPIAWQ 325
            +Q +P        A +
Sbjct: 294 MVQLSPSALGADMAAVE 310


>gi|326501984|dbj|BAK06484.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 613

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 52/196 (26%), Positives = 82/196 (41%), Gaps = 21/196 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA---------GDLAALLTNLEDRD 107
           VLF GPPG GKT+ A+V+A++ GV        +I            G + +L  NL D  
Sbjct: 383 VLFEGPPGTGKTSSARVIAKQAGVPLLYVPLEIIMSKYYGESERLLGSVFSLANNLPDGG 442

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           ++F+DE+   +I  +  ++ A     L +++ +       +    R  +IAAT R   L 
Sbjct: 443 IIFLDEVDSFAISRDSEMHEATRRI-LSVILRQIDGFEQDR----RVVVIAATNRKEDLD 497

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             L  RF   I     + +    I  + AK    +       E+   S  T  +AGR +R
Sbjct: 498 PALISRFDSVICFGLPDQQSRAEIAAQYAKHLTKS-------ELVQFSLATEEMAGRDIR 550

Query: 228 RVRDFAEVAHAKTITR 243
            +   AE   A    R
Sbjct: 551 DICMQAERHWASKFIR 566


>gi|302190914|ref|ZP_07267168.1| DNA polymerase III, gamma/tau subunit [Lactobacillus iners AB-1]
          Length = 583

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 49/265 (18%), Positives = 97/265 (36%), Gaps = 22/265 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPRT E   GQ   C  L+     +  R +     LF GP G GKT+ A++ A+ +    
Sbjct: 11  RPRTFEAVVGQSAICDTLR----NSIKRHKISHAFLFSGPRGTGKTSCAKIFAKAINCMD 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P    +  LAA    L   D++ ID      +  +  I +++ Y   + +    +
Sbjct: 67  SKDGEPCNQCSNCLAADKGIL--NDIIEIDAASNNGVDEIRAIRDKVKYAPTQGYYKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT +  +   +  R            + L
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRI-SNDQL 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              ++       +A  +++   IA  + G  R +  +L ++  + +       T  I   
Sbjct: 184 VARMKFILDQEKIAYDEKSLQVIAQVADGGMRDSLSILDQILSYDQAKINYQDTLAITGY 243

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIAR 273
           A  ++ I+ +  D L+ +    +  
Sbjct: 244 A-DQVKIEALFLDLLNKKTSQALEE 267


>gi|71004420|ref|XP_756876.1| hypothetical protein UM00729.1 [Ustilago maydis 521]
 gi|46095885|gb|EAK81118.1| hypothetical protein UM00729.1 [Ustilago maydis 521]
          Length = 343

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 79/227 (34%), Gaps = 38/227 (16%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   +   RP  L++  G  +    LKV       +     H+L  G PG+GKTT    +
Sbjct: 21  ELPWVEKYRPLRLDDVVGNKDTIDRLKVI-----QKDGNCPHLLISGLPGIGKTTSVLCL 75

Query: 75  AR------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIHRLSII 120
           AR            EL  +       V  K    A    +L      ++ +DE   ++  
Sbjct: 76  ARALLGEAYKEGVLELNASDERGVDVVRNKIKTFAQKKVSLPPGRHKIIILDEADSMTPA 135

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            ++ L   ME +                 N +RF    A  +   +  P+Q R  I    
Sbjct: 136 AQQALRRTMEIYS----------------NTTRF--CFACNQSNKIIEPIQSRCAILRYA 177

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
              +   LK +++   ++  +  +DE    I   + G  R A   L+
Sbjct: 178 KVRDEHILKRLLE-ICEMENVEYSDEGLAAIIFTTEGDMRQAINNLQ 223


>gi|307108040|gb|EFN56281.1| hypothetical protein CHLNCDRAFT_145161 [Chlorella variabilis]
          Length = 328

 Score = 69.3 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 52/281 (18%), Positives = 88/281 (31%), Gaps = 47/281 (16%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E       RPRTL++ +   +    ++  ++        L H+LF GPPG GKT+    +
Sbjct: 7   EVPWSEKYRPRTLDQISAHTDIIDTIRKLLD-----ENQLPHLLFYGPPGTGKTSTILAI 61

Query: 75  AREL------------GVNFRSTSGPVIAKAGDLAALLTNLEDR-DVLFIDEIHRLSIIV 121
           ARE+              +       V  +  D A+  T   ++  ++ +DE   ++   
Sbjct: 62  AREIYGSSLGNMTLELNASDDRGIAVVRNEIQDFASTRTIFSNKFKLIILDECDAMTKDA 121

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           +  L   ME +                              V  +   LQ R     R  
Sbjct: 122 QFALRRVMEKYTR------------------NARFCLICNYVSKIIPALQSRC-TRFRFQ 162

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR-RVRDFAEVAHAKT 240
               E +K  ++   +   + VT      +     G  R    LL+  V    EV     
Sbjct: 163 PLPGEFVKGRLEYICQQESIKVTQGGLEALIELGCGDMRRTLNLLQSTVMSAGEVTGDSA 222

Query: 241 ---------ITREIADAALLRLAIDKMGFDQLDLRYLTMIA 272
                       E     LL   + +     LDL+    +A
Sbjct: 223 YATAGKPLPQDIERCAQWLLNEPLGEAFQHMLDLQLQKGVA 263


>gi|289432058|ref|YP_003461931.1| ATPase AAA [Dehalococcoides sp. GT]
 gi|289432142|ref|YP_003462015.1| ATPase AAA [Dehalococcoides sp. GT]
 gi|288945778|gb|ADC73475.1| ATPase associated with various cellular activities AAA_5
           [Dehalococcoides sp. GT]
 gi|288945862|gb|ADC73559.1| ATPase associated with various cellular activities AAA_5
           [Dehalococcoides sp. GT]
          Length = 308

 Score = 69.3 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 54/216 (25%), Positives = 90/216 (41%), Gaps = 14/216 (6%)

Query: 27  LEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTS 86
             +  G  +  + LK     A   +E   HV+  GPP L KT     + +  G       
Sbjct: 97  FTDIIGHEDVKALLK-----AILLSEKPVHVMLTGPPALAKTLFLWDIEQTFGEQAIWLV 151

Query: 87  GPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARS 146
           G   +KAG L  L+   E + +L IDE+ +++ +    L   ME  +L          R 
Sbjct: 152 GSATSKAG-LWDLVAEREPKFLL-IDEMDKMNAVDMAALLTMMEGGRLV----RAKRGRE 205

Query: 147 VKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDE 206
           + IN +   +IAA+ R+  L+  L+ RF I     +   E L   V +G  +   ++ ++
Sbjct: 206 LDIN-NPLKVIAASNRLEKLSPELRSRFAIRKLNAYGRSEFLT--VVKGVLVRKESLPND 262

Query: 207 AACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            A EIA +  G  +     +R  R   +V   + I 
Sbjct: 263 LAEEIARKLDGRSQDVRDAIRIARLAPQVGVDRAIN 298


>gi|251792166|ref|YP_003006886.1| DNA polymerase III subunits gamma and tau [Aggregatibacter
           aphrophilus NJ8700]
 gi|247533553|gb|ACS96799.1| DNA polymerase III subunit tau [Aggregatibacter aphrophilus NJ8700]
          Length = 680

 Score = 68.9 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 49/254 (19%), Positives = 85/254 (33%), Gaps = 55/254 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGV- 80
           RP+T  E  GQ    + L     A   R   L H  LF G  G+GKT++A++ A+ L   
Sbjct: 11  RPKTFNEVVGQQHVLAAL-----ANGLRENRLHHAYLFSGTRGVGKTSIARLFAKGLNCV 65

Query: 81  -----------------------NFRSTSGPVIAKAGDLAALLTNLEDRDVL------FI 111
                                  +          K  D   LL N++ + V+       I
Sbjct: 66  NGVTAEPCSECEHCKAIEEGNFIDLIEIDAASRTKVEDTRELLDNVQYKPVVGRYKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSRHSFNALLKTLEE------------------PPEYVKFLLATTDPHKLPVTIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L   E + +   +    +   +   D A  ++A  ++G+ R +  L  +   
Sbjct: 168 SRC-MQFHLKALEPQQISAHLADILQQENIPFEDLALDKLANAAQGSIRDSLSLTDQAIA 226

Query: 232 FAEVAHAKTITREI 245
            +      ++ +E+
Sbjct: 227 MSNGNVTLSVVKEM 240


>gi|242823966|ref|XP_002488166.1| DNA replication factor C subunit  Rfc4, putative [Talaromyces
           stipitatus ATCC 10500]
 gi|218713087|gb|EED12512.1| DNA replication factor C subunit Rfc4, putative [Talaromyces
           stipitatus ATCC 10500]
          Length = 815

 Score = 68.9 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 74/227 (32%), Gaps = 38/227 (16%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   +   RP  L++  G  E    LK+      A+   + HV+  G PG+GKTT    +
Sbjct: 27  ELPWVEKYRPVYLDDIVGNTETIERLKII-----AKDGNMPHVIISGMPGIGKTTSILCL 81

Query: 75  A-----RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDV---------LFIDEIHRLSII 120
           A               +         +   +     + V         + +DE   ++  
Sbjct: 82  ARQMLGNAYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRHKLVILDEADSMTPG 141

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            ++ L   ME +                   +RF    A  +   +  PLQ R  I    
Sbjct: 142 AQQALRRTMEIYSTT----------------TRFAF--ACNQSNKIIEPLQSRCAILRYS 183

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
              + + +K + Q   +   +  +++    +   + G  R A   L+
Sbjct: 184 RLTDGQVVKRLSQ-ICEAEKVEFSEDGIAALVFSAEGDMRQAINNLQ 229


>gi|158292645|ref|XP_314028.3| AGAP005144-PA [Anopheles gambiae str. PEST]
 gi|157017089|gb|EAA09454.3| AGAP005144-PA [Anopheles gambiae str. PEST]
          Length = 327

 Score = 68.9 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 71/234 (30%), Gaps = 38/234 (16%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           +  NV      +   RP  L +     E    +  FI+      E L H+LF GPPG GK
Sbjct: 1   MDANVKSNLPWVEKYRPAKLNDLISHEEIIGTINKFIK-----EEQLPHLLFYGPPGTGK 55

Query: 68  TTLAQVVARE------LGVNFRSTSGPVIAKAGDLA-ALLTNLEDRDVL-------FIDE 113
           T+     AR+       G      +         +   +L     R +         +DE
Sbjct: 56  TSTILACARQLYKPQSFGSMVLELNASDDRGINIVRGQILDFASTRTIFKGGYKLIILDE 115

Query: 114 IHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
              ++   +  L   +E +                              +  +   +Q R
Sbjct: 116 ADAMTNDAQNALRRIIEKYT------------------ENVRFCIICNYLSKIIPAIQSR 157

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
                R      + +   ++   +  G+ VTD+    +   + G  R    +L+
Sbjct: 158 C-TRFRFAPLSPDQILPRLEHVVEAEGIDVTDDGKKALMTLAGGDMRKVLNVLQ 210


>gi|68076857|ref|XP_680348.1| replication factor c subunit 4 [Plasmodium berghei strain ANKA]
 gi|56501262|emb|CAH99168.1| replication factor c subunit 4, putative [Plasmodium berghei]
          Length = 335

 Score = 68.9 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 46/253 (18%), Positives = 88/253 (34%), Gaps = 38/253 (15%)

Query: 2   MDREGLLSRNVSQE-DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M+ +   +R + +  D  I   RP  LE+  G     + LK  I      +  + ++L  
Sbjct: 1   MEEDSFKNRLLKRNIDIWIEKYRPEYLEDVVGNPFVINTLKSII-----VSGNMPNLLLA 55

Query: 61  GPPGLGKTTLAQVVAREL-----GVNFRSTSGPVIAKAGDLAALLTNL--------EDRD 107
           G PG GKTT    +A E+            +         +   + +             
Sbjct: 56  GAPGTGKTTSILCLASEMLGSQAKKAVLELNASDDRGINVIRDRIKSFAKEISLPPGRHK 115

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           ++ +DE+  ++   ++ L   ME +                 + +RF    A  +   + 
Sbjct: 116 IIILDEVDSMTTAAQQSLRRIMELYS----------------DTTRF--ALACNQSEKII 157

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
           + LQ R  I       + + LK I++   +   +  TD+    I   + G  R A   L+
Sbjct: 158 DALQSRCAIIRYFKLTDDQVLKRILK-ICEYENIKYTDDGLETITFIADGDLRKAVNCLQ 216

Query: 228 RVRDFAEVAHAKT 240
                 EV + + 
Sbjct: 217 STYAGLEVVNKEN 229


>gi|32474299|ref|NP_867293.1| DNA polymerase III gamma and tau subunits [Rhodopirellula baltica
           SH 1]
 gi|32444837|emb|CAD74839.1| DNA polymerase III gamma and tau subunits [Rhodopirellula baltica
           SH 1]
          Length = 676

 Score = 68.9 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 57/302 (18%), Positives = 105/302 (34%), Gaps = 30/302 (9%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           S +           RPR   +  GQ      L+  IE ++         LF G  G+GKT
Sbjct: 31  SADNGSYVVVARRYRPRDFTQLVGQDHVARALQGAIETSRVGHAY----LFTGARGVGKT 86

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL--- 125
           + A++ A+ L      T+ P      D+A  + + ED DV+ ID      I     L   
Sbjct: 87  STARIFAKALNHPDGPTANPDSE--SDVAQAIDSGEDVDVIEIDGASNRGIDEIRSLRAN 144

Query: 126 ---YPAMEDFQLDLM------VGEGPSARSVKINLSR--FTLIAATTRVGLLTNPLQDRF 174
               P+   +++ ++       G   +A    +         I  TT    +   +  R 
Sbjct: 145 VGVRPSRSRYKIYIIDEVHMLTGAAFNALLKTLEEPPEHVKFIFCTTDPEKIPITVLSRC 204

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
                    E + +   ++   +     V DEA   +A R+ G+ R +  LL +V  F+ 
Sbjct: 205 Q-RFDFAPVESDKIVQRLREIVEAEDNTVEDEALELLARRAAGSMRDSQSLLEQVLSFS- 262

Query: 235 VAHAKTITREIADAAL---LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
                 +T +     L       + ++     D      +++       G++  +  L+E
Sbjct: 263 ---DGHLTADHVHTMLGTADDQRLHRLAEAMADRDASAALSQIDEAIAAGVD--AGRLAE 317

Query: 292 PR 293
             
Sbjct: 318 QM 319


>gi|332971339|gb|EGK10302.1| DNA polymerase III, gamma/tau subunit DnaX [Desmospora sp. 8437]
          Length = 356

 Score = 68.9 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 84/233 (36%), Gaps = 25/233 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  E+  GQ    + LK     A A        LF GP G GKT+ A+++A+ +    
Sbjct: 11  RPQKFEDLIGQEHVTTTLK----NALAEGHFSHAYLFSGPRGTGKTSAAKIMAKAVNC-- 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDR--DVLFID-----EIHRLSIIVEEILYPAMEDFQLD 135
               GP      +  A     E    DV+ ID      +  +  + +++ Y   E     
Sbjct: 65  --LQGPAPEPCNECDACRKITEGSLMDVVEIDAASNRGVDEIRDLRDKVKYAPSEVRCKV 122

Query: 136 LMVGEGPS--ARSVKINLSRF-------TLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            +V E     A +    L            I ATT    L + +  R         + + 
Sbjct: 123 YIVDEVHMLTAEAFNALLKTLEEPPGHAIFILATTEPHKLPSTIISRCQ-RFSFRRHTLG 181

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           +    +++     G+   D A   IA  + G  R A  LL +V  F++    +
Sbjct: 182 NTLGHLRKICDSQGIQAEDSALAVIAQAADGGMRDALSLLDQVLAFSDDRVDE 234


>gi|329920997|ref|ZP_08277525.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners SPIN
           1401G]
 gi|328935273|gb|EGG31753.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners SPIN
           1401G]
          Length = 583

 Score = 68.9 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 49/265 (18%), Positives = 97/265 (36%), Gaps = 22/265 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPRT E   GQ   C  L+     +  R +     LF GP G GKT+ A++ A+ +    
Sbjct: 11  RPRTFEAVVGQSAICDTLR----NSIKRHKISHAFLFSGPRGTGKTSCAKIFAKAINCMD 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P    +  LAA    L   D++ ID      +  +  I +++ Y   + +    +
Sbjct: 67  SKDGEPCNQCSNCLAADKGIL--NDIIEIDAASNNGVDEIRAIRDKVKYAPTQGYYKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT +  +   +  R            + L
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRI-SNDQL 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              ++       +A  +++   IA  + G  R +  +L ++  + +       T  I   
Sbjct: 184 VARMKFILDQEKIAYDEKSLQVIAQVADGGMRDSLSILDQILSYDQAKINYQDTLAITGY 243

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIAR 273
           A  ++ I+ +  D L+ +    +  
Sbjct: 244 A-DQVKIEALFLDLLNKKTSQALEE 267


>gi|220934248|ref|YP_002513147.1| DNA polymerase III, subunits gamma and tau [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219995558|gb|ACL72160.1| DNA polymerase III, subunits gamma and tau [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 553

 Score = 68.9 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 55/267 (20%), Positives = 98/267 (36%), Gaps = 37/267 (13%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPR+ EE  GQ      L   +     R + L H  LF G  G+GKTT+A+V+A+ L   
Sbjct: 11  RPRSFEEMVGQPHVVRALSNAL-----RDQRLHHAYLFTGTRGVGKTTVARVLAKCLNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPA---------ME 130
              T+ P     G  +A     E R  D++ +D   R  +     L             +
Sbjct: 66  TGVTATP----CGQCSACREIDEGRFIDLIEVDAASRTKVEDTRELLDNVQYAPTRGRYK 121

Query: 131 DFQLDLMVGEGPSA-----RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
            + +D +      +     ++++        + ATT    L   +  R  +   L     
Sbjct: 122 VYLIDEVHMLSTHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSRC-LQFSLKAMPA 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           + +   +++  +  G+     A   +A  + G+ R A  LL    D A    +  +  + 
Sbjct: 181 DMVGAHLKKVLEQEGVDFDPPAIMRLARAASGSMRDALSLL----DQAIAYGSGALRDDD 236

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIA 272
               L  ++ D +       R L  +A
Sbjct: 237 VREMLGAISQDHL------ERMLQALA 257


>gi|158285610|ref|XP_308395.4| AGAP007477-PA [Anopheles gambiae str. PEST]
 gi|157020075|gb|EAA04621.4| AGAP007477-PA [Anopheles gambiae str. PEST]
          Length = 341

 Score = 68.9 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 51/254 (20%), Positives = 87/254 (34%), Gaps = 39/254 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             I   RP+  EE  G  E  + L +F     A      +++  GPPG+GKTT    +AR
Sbjct: 26  PWIEKYRPQRFEEIVGNEETVARLGIFASQGNA-----PNIIIAGPPGVGKTTTILCLAR 80

Query: 77  ------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIHRLSIIVE 122
                       EL  +       V +K    A     L      ++ +DE   ++   +
Sbjct: 81  ILLGPNFREAVLELNASNERGIDVVRSKIKMFAQQKVTLPRGRHKIVILDEADSMTEGAQ 140

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           + L   ME +                 N +RF L   T+    +  P+Q R  +      
Sbjct: 141 QALRRTMEIYS----------------NTTRFALACNTSE--KIIEPIQSRCAMLRFSKL 182

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA-GRLLRRVRDFAEVAHAKTI 241
            + + L  +V+   +   L+  ++    I   ++G  R A   L      F  ++ A   
Sbjct: 183 SDAQVLAKVVE-ICQHENLSYDEDGLEAIVFTAQGDMRQALNNLQSTANGFGHISGANVF 241

Query: 242 TREIADAALLRLAI 255
                   LL   +
Sbjct: 242 KVCDEPHPLLVQDM 255


>gi|197116612|ref|YP_002137039.1| DNA polymerase III, gamma/tau subunits [Geobacter bemidjiensis Bem]
 gi|197085972|gb|ACH37243.1| DNA polymerase III, gamma and tau subunits [Geobacter bemidjiensis
           Bem]
          Length = 582

 Score = 68.9 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 51/309 (16%), Positives = 95/309 (30%), Gaps = 47/309 (15%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN- 81
           RP+T  +  GQ      LK  I+  +         LF G  G+GKT+ A+++A+ L    
Sbjct: 11  RPQTFSDLVGQEHVSQTLKNAIDGGRVAHA----FLFTGARGVGKTSSARILAKALNCES 66

Query: 82  -----------------------FRSTSGPVIAKAGDLAALLTNLE------DRDVLFID 112
                                       G       D+  L  N++         +  ID
Sbjct: 67  GLTVEPCNTCSTCLEITEGNSVDVFEIDGASNTGVDDIRELRDNIKYLPSRSRYKIFIID 126

Query: 113 EIHRLSIIVEEILYPAMED--FQLDLMVGEGPSARSVKINLSRFTLIAATTRV-GLLTNP 169
           E+H L+      L   +E+    +  +       +     LSR             + + 
Sbjct: 127 EVHMLTTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFDFKRIALPRIVSR 186

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           L  R+ +         E L  + ++G      +++          ++        LL  V
Sbjct: 187 L--RYIVDQEGVQVSDEALAVVARKGDGSMRDSLSTLDQVLAFCGNQVADADVAALLGVV 244

Query: 230 RDFAEVAHAKTITREIADAALLRLAI-DKMGFDQLDLRYLTMIARNFGGGPVGIETISAG 288
                +   + +  +    AL  +A  D  G+     ++   +   F         I   
Sbjct: 245 DRRLIMDGCRAVLSKEVREALQIVAQVDSFGYSM--RQFCRELIDQFRN-----VAILKA 297

Query: 289 LSEPRDAIE 297
           + EP D +E
Sbjct: 298 VGEPGDLLE 306


>gi|162312520|ref|XP_001713099.1| DNA replication factor C complex subunit Rfc3 [Schizosaccharomyces
           pombe 972h-]
 gi|13431787|sp|O14003|RFC3_SCHPO RecName: Full=Replication factor C subunit 3; Short=Replication
           factor C3
 gi|4468733|emb|CAB38106.1| replication factor C subunit [Schizosaccharomyces pombe]
 gi|5688939|dbj|BAA82745.1| Rfc3 [Schizosaccharomyces pombe]
 gi|5688941|dbj|BAA82746.1| Rfc3 [Schizosaccharomyces pombe]
 gi|159884003|emb|CAB39134.2| DNA replication factor C complex subunit Rfc3 [Schizosaccharomyces
           pombe]
          Length = 342

 Score = 68.9 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 36/226 (15%), Positives = 71/226 (31%), Gaps = 37/226 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP  LE+     +  S L+ FI + +     + H+LF GPPG GKT+     AR
Sbjct: 24  PWVEKYRPANLEDVVSHKDIISTLEKFISSNR-----VPHMLFYGPPGTGKTSTILACAR 78

Query: 77  -----ELGVNFRSTSGPVIAKAGDLAALLTN-LEDRDVL-------FIDEIHRLSIIVEE 123
                         +         +   + N    R +         +DE   +++  + 
Sbjct: 79  KIYGPNYRNQLMELNASDDRGIDAVREQIKNFASTRQIFASTFKMIILDEADAMTLAAQN 138

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
            L   +E +                              +  ++  +Q R     R    
Sbjct: 139 ALRRVIEKYT------------------KNVRFCIICNYINKISPAIQSRC-TRFRFQPL 179

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
             ++++  V    +     +  +A   +   S+G  R A  +L+  
Sbjct: 180 PPKEIEKTVDHVIQSEHCNIDPDAKMAVLRLSKGDMRKALNILQAC 225


>gi|330002982|ref|ZP_08304507.1| DNA polymerase III, subunit gamma and tau [Klebsiella sp. MS 92-3]
 gi|328537093|gb|EGF63372.1| DNA polymerase III, subunit gamma and tau [Klebsiella sp. MS 92-3]
          Length = 635

 Score = 68.9 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 53/317 (16%), Positives = 108/317 (34%), Gaps = 31/317 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++   +    + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +A    A   ++  + G+ R A  L     D A  +    +T      
Sbjct: 184 RHQLEHILGEEQIAFEPRALQLLSRAADGSLRDALSL----TDQAIASGEGQLTAASVST 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L  D+       L  +  +    G   +     +A      +A+   ++  + +  
Sbjct: 240 MLGTLDDDQA------LSLIEALVAADGERVMAGVNDAAARGVEWEALLVEMQSLLHRIA 293

Query: 309 FIQRTPRGRLLMPIAWQ 325
            +Q +P        A +
Sbjct: 294 MVQLSPSALGADMAAVE 310


>gi|145350673|ref|XP_001419724.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579956|gb|ABO98017.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 342

 Score = 68.9 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 62/340 (18%), Positives = 113/340 (33%), Gaps = 56/340 (16%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M+D E    +        +   RPR +++   Q +    L+  ++        + H LF 
Sbjct: 1   MVDAEATRPQRAEAHAPWVEKYRPRVVKDVASQEQIVGVLENALKTG-----NMPHCLFY 55

Query: 61  GPPGLGKTTLAQVVARE------LGVNFRSTSGPVIAKAGDLAALLTNLEDR-------- 106
           GPPG GKTT A  +A+E           +  +         +   +     +        
Sbjct: 56  GPPGTGKTTTALAIAKELYGPELYKQRVKELNASDERGISVVRNKIKTFASQAVGAPAPG 115

Query: 107 ------DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAAT 160
                  +L +DE   ++   +  L   ME +                  ++RF L    
Sbjct: 116 YPSPPYKILILDEADAMTGDAQSALRRMMETYS----------------KVTRFFL--LC 157

Query: 161 TRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPR 220
             V  + +P+  R     R +    E +   ++   +  GL ++D+     +  S G  R
Sbjct: 158 NYVTKIIDPIASRCA-KFRFSPLAQETMGARLKFIGEQEGLEMSDDVFAMCSKHSGGDMR 216

Query: 221 IAGRLLR-RVRDFA-------EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIA 272
            A  LL+   R FA        V  A  I  E            +  F++       ++ 
Sbjct: 217 KAITLLQSAARLFAGKISGASIVEVAGHIPDEKIKKMYDLCR--EGKFEEAQAHMEDILR 274

Query: 273 RNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
             F G  + ++  S  + E   + E   E   I+ G + R
Sbjct: 275 DGFSGLKI-LDQYSDYVLEADCSDEVKAE-IFIKLGEVDR 312


>gi|15610857|ref|NP_218238.1| DNA polymerase III subunits gamma and tau [Mycobacterium
           tuberculosis H37Rv]
 gi|15843342|ref|NP_338379.1| DNA polymerase III subunits gamma and tau [Mycobacterium
           tuberculosis CDC1551]
 gi|31794893|ref|NP_857386.1| DNA polymerase III subunits gamma and tau [Mycobacterium bovis
           AF2122/97]
 gi|121639637|ref|YP_979861.1| DNA polymerase III subunits gamma and tau [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|148663586|ref|YP_001285109.1| DNA polymerase III subunits gamma and tau [Mycobacterium
           tuberculosis H37Ra]
 gi|148824926|ref|YP_001289680.1| DNA polymerase III subunits gamma and tau [Mycobacterium
           tuberculosis F11]
 gi|167970876|ref|ZP_02553153.1| DNA polymerase III subunits gamma and tau [Mycobacterium
           tuberculosis H37Ra]
 gi|215405773|ref|ZP_03417954.1| DNA polymerase III subunits gamma and tau [Mycobacterium
           tuberculosis 02_1987]
 gi|215413648|ref|ZP_03422316.1| DNA polymerase III subunits gamma and tau [Mycobacterium
           tuberculosis 94_M4241A]
 gi|215432700|ref|ZP_03430619.1| DNA polymerase III subunits gamma and tau [Mycobacterium
           tuberculosis EAS054]
 gi|215448061|ref|ZP_03434813.1| DNA polymerase III subunits gamma and tau [Mycobacterium
           tuberculosis T85]
 gi|224992133|ref|YP_002646822.1| DNA polymerase III subunit gamma and tau [Mycobacterium bovis BCG
           str. Tokyo 172]
 gi|253800767|ref|YP_003033768.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
           tuberculosis KZN 1435]
 gi|254233216|ref|ZP_04926542.1| DNA polymerase III (subunit gamma/tau) dnaZ/X [Mycobacterium
           tuberculosis C]
 gi|254366266|ref|ZP_04982310.1| DNA polymerase III (subunit gamma/tau) dnaZ/X [Mycobacterium
           tuberculosis str. Haarlem]
 gi|254552831|ref|ZP_05143278.1| DNA polymerase III subunits gamma and tau [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|260184642|ref|ZP_05762116.1| DNA polymerase III subunits gamma and tau [Mycobacterium
           tuberculosis CPHL_A]
 gi|260198766|ref|ZP_05766257.1| DNA polymerase III subunits gamma and tau [Mycobacterium
           tuberculosis T46]
 gi|260202922|ref|ZP_05770413.1| DNA polymerase III subunits gamma and tau [Mycobacterium
           tuberculosis K85]
 gi|289441157|ref|ZP_06430901.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
           tuberculosis T46]
 gi|289445320|ref|ZP_06435064.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
           tuberculosis CPHL_A]
 gi|289555986|ref|ZP_06445196.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
           tuberculosis KZN 605]
 gi|289572372|ref|ZP_06452599.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
           tuberculosis K85]
 gi|289747560|ref|ZP_06506938.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
           tuberculosis 02_1987]
 gi|289755852|ref|ZP_06515230.1| DNA polymerase III subunit gamma/tau [Mycobacterium tuberculosis
           EAS054]
 gi|289759882|ref|ZP_06519260.1| DNA polymerase III subunit gamma/tau [Mycobacterium tuberculosis
           T85]
 gi|294995369|ref|ZP_06801060.1| DNA polymerase III subunits gamma and tau [Mycobacterium
           tuberculosis 210]
 gi|297636399|ref|ZP_06954179.1| DNA polymerase III subunits gamma and tau [Mycobacterium
           tuberculosis KZN 4207]
 gi|297733393|ref|ZP_06962511.1| DNA polymerase III subunits gamma and tau [Mycobacterium
           tuberculosis KZN R506]
 gi|298527198|ref|ZP_07014607.1| DNA polymerase III, gamma and tau subunits [Mycobacterium
           tuberculosis 94_M4241A]
 gi|306778078|ref|ZP_07416415.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
           tuberculosis SUMu001]
 gi|306786633|ref|ZP_07424955.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
           tuberculosis SUMu003]
 gi|306795383|ref|ZP_07433685.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
           tuberculosis SUMu006]
 gi|306801354|ref|ZP_07438022.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
           tuberculosis SUMu008]
 gi|306805565|ref|ZP_07442233.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
           tuberculosis SUMu007]
 gi|306969962|ref|ZP_07482623.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
           tuberculosis SUMu009]
 gi|306974195|ref|ZP_07486856.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
           tuberculosis SUMu010]
 gi|307081903|ref|ZP_07491073.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
           tuberculosis SUMu011]
 gi|307086516|ref|ZP_07495629.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
           tuberculosis SUMu012]
 gi|313660724|ref|ZP_07817604.1| DNA polymerase III subunits gamma and tau [Mycobacterium
           tuberculosis KZN V2475]
 gi|54036989|sp|P63976|DPO3X_MYCBO RecName: Full=DNA polymerase III subunit gamma/tau
 gi|54040950|sp|P63975|DPO3X_MYCTU RecName: Full=DNA polymerase III subunit gamma/tau
 gi|2960145|emb|CAA18043.1| DNA POLYMERASE III (SUBUNIT GAMMA/TAU) DNAZ/X [Mycobacterium
           tuberculosis H37Rv]
 gi|13883704|gb|AAK48193.1| DNA polymerase III, gamma and tau subunits [Mycobacterium
           tuberculosis CDC1551]
 gi|31620491|emb|CAD95934.1| DNA POLYMERASE III (SUBUNIT GAMMA/TAU) DNAZ/X [Mycobacterium bovis
           AF2122/97]
 gi|121495285|emb|CAL73771.1| DNA polymerase III (subunit gamma/tau) dnaZ/X [Mycobacterium bovis
           BCG str. Pasteur 1173P2]
 gi|124603009|gb|EAY61284.1| DNA polymerase III (subunit gamma/tau) dnaZ/X [Mycobacterium
           tuberculosis C]
 gi|134151778|gb|EBA43823.1| DNA polymerase III (subunit gamma/tau) dnaZ/X [Mycobacterium
           tuberculosis str. Haarlem]
 gi|148507738|gb|ABQ75547.1| DNA polymerase III subunits gamma and tau DnaZ/X [Mycobacterium
           tuberculosis H37Ra]
 gi|148723453|gb|ABR08078.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
           tuberculosis F11]
 gi|224775248|dbj|BAH28054.1| DNA polymerase III subunit gamma and tau [Mycobacterium bovis BCG
           str. Tokyo 172]
 gi|253322270|gb|ACT26873.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
           tuberculosis KZN 1435]
 gi|289414076|gb|EFD11316.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
           tuberculosis T46]
 gi|289418278|gb|EFD15479.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
           tuberculosis CPHL_A]
 gi|289440618|gb|EFD23111.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
           tuberculosis KZN 605]
 gi|289536803|gb|EFD41381.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
           tuberculosis K85]
 gi|289688088|gb|EFD55576.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
           tuberculosis 02_1987]
 gi|289696439|gb|EFD63868.1| DNA polymerase III subunit gamma/tau [Mycobacterium tuberculosis
           EAS054]
 gi|289715446|gb|EFD79458.1| DNA polymerase III subunit gamma/tau [Mycobacterium tuberculosis
           T85]
 gi|298496992|gb|EFI32286.1| DNA polymerase III, gamma and tau subunits [Mycobacterium
           tuberculosis 94_M4241A]
 gi|308213607|gb|EFO73006.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
           tuberculosis SUMu001]
 gi|308328744|gb|EFP17595.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
           tuberculosis SUMu003]
 gi|308344067|gb|EFP32918.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
           tuberculosis SUMu006]
 gi|308347865|gb|EFP36716.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
           tuberculosis SUMu007]
 gi|308351853|gb|EFP40704.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
           tuberculosis SUMu008]
 gi|308352518|gb|EFP41369.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
           tuberculosis SUMu009]
 gi|308356468|gb|EFP45319.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
           tuberculosis SUMu010]
 gi|308360415|gb|EFP49266.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
           tuberculosis SUMu011]
 gi|308364111|gb|EFP52962.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
           tuberculosis SUMu012]
 gi|323717585|gb|EGB26787.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
           tuberculosis CDC1551A]
 gi|326905560|gb|EGE52493.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
           tuberculosis W-148]
 gi|328460495|gb|AEB05918.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
           tuberculosis KZN 4207]
          Length = 578

 Score = 68.9 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 48/237 (20%), Positives = 82/237 (34%), Gaps = 23/237 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP +  E  GQ    + L V ++A +         LF GP G GKT+ A+++AR
Sbjct: 2   ALYRKYRPASFAEVVGQEHVTAPLSVALDAGRINHAY----LFSGPRGCGKTSSARILAR 57

Query: 77  ELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAM 129
            L      T+ P  V      LA         DV+ +D      +     + +   Y  +
Sbjct: 58  SLNCAQGPTANPCGVCESCVSLAP--NAPGSIDVVELDAASHGGVDDTRELRDRAFYAPV 115

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +      +V E             + V+        I ATT    +   ++ R       
Sbjct: 116 QSRYRVFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSR-THHYPF 174

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                  ++ ++ R  +  G+ V D     +     G+PR    +L ++   A   H
Sbjct: 175 RLLPPRTMRALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTH 231


>gi|319760438|ref|YP_004124376.1| DNA polymerase III subunit gamma and tau [Candidatus Blochmannia
           vafer str. BVAF]
 gi|318039152|gb|ADV33702.1| DNA polymerase III subunit gamma and tau [Candidatus Blochmannia
           vafer str. BVAF]
          Length = 722

 Score = 68.9 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 50/295 (16%), Positives = 87/295 (29%), Gaps = 58/295 (19%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+   E  GQ       K  I +       + H  +  G  G GKTT+A++ A+ L   
Sbjct: 11  RPKKFSEIVGQAHII---KAMIRSFIL--NRIHHAYILSGTRGSGKTTIARLFAKGLNCE 65

Query: 82  FRSTS--------------------------GPVIAKAGDLAALLTNLE------DRDVL 109
            +  S                              +K  +    L N++         + 
Sbjct: 66  IQFASNNDVCGQCKNCLDIESGCFIDLIEIDAASRSKVEETREFLDNMQYAPSQSQFKIY 125

Query: 110 FIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
            IDE H LS      L   +E+                         I  TT    L   
Sbjct: 126 LIDEAHMLSRHSFNALLKTLEE------------------PPHHVKFILITTDHQKLPET 167

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACE-IAMRSRGTPRIAGRLLRR 228
           +  R  +   L       + T +Q       + + D    E +A  ++G+ R A  LL +
Sbjct: 168 ILSRC-LQFYLKPLSTSQITTQLQYICNQENININDIHLLELLANSAKGSMRDALNLLEQ 226

Query: 229 VRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIE 283
                +  H  +         L       +  D ++     ++ +      +GI+
Sbjct: 227 AIILGDSNHITSDVINNMLGILDVDDSISLIEDLMNGNINNIMHKIDHYSNIGID 281


>gi|238893440|ref|YP_002918174.1| DNA polymerase III subunits gamma and tau [Klebsiella pneumoniae
           NTUH-K2044]
 gi|238545756|dbj|BAH62107.1| DNA polymerase III subunits gamma and tau [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
          Length = 635

 Score = 68.9 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 53/317 (16%), Positives = 108/317 (34%), Gaps = 31/317 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++   +    + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +A    A   ++  + G+ R A  L     D A  +    +T      
Sbjct: 184 RHQLEHILGEEQIAFEPRALQLLSRAADGSLRDALSL----TDQAIASGEGQLTAASVST 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L  D+       L  +  +    G   +     +A      +A+   ++  + +  
Sbjct: 240 MLGTLDDDQA------LSLIEALVAADGERVMAGVNDAAARGVEWEALLVEMQSLLHRIA 293

Query: 309 FIQRTPRGRLLMPIAWQ 325
            +Q +P        A +
Sbjct: 294 MVQLSPSALGADMAAVE 310


>gi|152969025|ref|YP_001334134.1| DNA polymerase III subunits gamma and tau [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|150953874|gb|ABR75904.1| DNA polymerase III subunits gamma and tau [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
          Length = 635

 Score = 68.9 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 53/317 (16%), Positives = 108/317 (34%), Gaps = 31/317 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++   +    + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +A    A   ++  + G+ R A  L     D A  +    +T      
Sbjct: 184 RHQLEHILGEEQIAFEPRALQLLSRAADGSLRDALSL----TDQAIASGEGQLTAASVST 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L  D+       L  +  +    G   +     +A      +A+   ++  + +  
Sbjct: 240 MLGTLDDDQA------LSLIEALVAADGERVMAGVNDAAARGVEWEALLVEMQSLLHRIA 293

Query: 309 FIQRTPRGRLLMPIAWQ 325
            +Q +P        A +
Sbjct: 294 MVQLSPSALGADMAAVE 310


>gi|290986773|ref|XP_002676098.1| predicted protein [Naegleria gruberi]
 gi|284089698|gb|EFC43354.1| predicted protein [Naegleria gruberi]
          Length = 337

 Score = 68.9 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 48/247 (19%), Positives = 82/247 (33%), Gaps = 40/247 (16%)

Query: 1   MMDREGLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M+      S   ++ D   +   RP  +++  G  EA   L+V  E        + +++ 
Sbjct: 1   MIASNSSSSGVPTEMDRPWVERYRPIDMDDIVGNEEAVMRLRVIAEEG-----NMPNLIL 55

Query: 60  VGPPGLGKTTLAQVVAR-------------ELGVNFRSTSGPVIAKAGDLAALLTNL--E 104
            GPPG GKTT    +AR             EL  +   T   V  K    A    NL   
Sbjct: 56  SGPPGTGKTTSIMCLARSLLGKEVYKEAVLELNASDERTLDVVRNKIKQFAQKKVNLPPN 115

Query: 105 DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164
              ++ +DE   ++   ++ +   ME +                   S      A     
Sbjct: 116 RHKIVILDEADSMTSAAQQAMRRIMEIYS------------------STTRFALACNDSS 157

Query: 165 LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGR 224
            +  P+Q R  +       + E L  ++    +L  +  T++    I   S G  R A  
Sbjct: 158 KIIEPIQSRCALVRYKRLTDAELLTRLIV-ICELEHVQKTEDGLESILYTSDGDMRNAIN 216

Query: 225 LLRRVRD 231
            L+    
Sbjct: 217 SLQATYQ 223


>gi|295669055|ref|XP_002795076.1| replication factor C subunit 2 [Paracoccidioides brasiliensis Pb01]
 gi|226285769|gb|EEH41335.1| replication factor C subunit 2 [Paracoccidioides brasiliensis Pb01]
          Length = 352

 Score = 68.9 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 45/238 (18%), Positives = 80/238 (33%), Gaps = 38/238 (15%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           +E L       E   +   RP  L++  G  E    LK+      AR   + HV+  G P
Sbjct: 16  QENLAGAPPDYELPWVEKYRPVYLDDIVGNTETIERLKII-----ARDGNMPHVIISGMP 70

Query: 64  GLGKTTLAQVVAREL-----GVNFRSTSGPVIAKAGDLAALLTNLEDRDV---------L 109
           G+GKTT    +AR++            +         +   +     + V         +
Sbjct: 71  GIGKTTSILCLARQMLGDSYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRHKLV 130

Query: 110 FIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
            +DE   ++   ++ L   ME +                   +RF    A  +   +  P
Sbjct: 131 ILDEADSMTSGAQQALRRTMEIYSTT----------------TRFAF--ACNQSNKIIEP 172

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
           LQ R  I       + + LK + Q   K   +  +++    +   + G  R A   L+
Sbjct: 173 LQSRCAILRYARLTDAQILKRLTQ-ICKTENVKHSEDGIAALIFSAEGDMRQAINNLQ 229


>gi|299756140|ref|XP_001829123.2| replication factor C subunit 4 [Coprinopsis cinerea okayama7#130]
 gi|298411540|gb|EAU92758.2| replication factor C subunit 4 [Coprinopsis cinerea okayama7#130]
          Length = 323

 Score = 68.9 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 77/223 (34%), Gaps = 38/223 (17%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR-- 76
           +   RP+ L++  G  +    LKV      AR     H++  G PG+GKTT    +A   
Sbjct: 5   VEKYRPQVLDDIVGNTDTIERLKVI-----ARDGNCPHLIISGMPGIGKTTSIHCLAHQL 59

Query: 77  ----------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIHRLSIIVEEI 124
                     EL  +       V  K    A     L      ++ +DE   ++   ++ 
Sbjct: 60  LGDAYKEGVLELNASDERGIDVVRNKIKAFAQKKVTLPPGRHKIIILDEADSMTPGAQQA 119

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           L   ME F                 N +RF    A      +  P+Q R  I       +
Sbjct: 120 LRRTMEIFS----------------NTTRF--CLACNMSNKIIEPIQSRCAILRYAKLRD 161

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
            E LK +++   ++  +   D+    +   + G  R A   L+
Sbjct: 162 QEVLKRLLE-ICEMEKVQYNDDGLTALIFTAEGDMRQAINNLQ 203


>gi|291238303|ref|XP_002739068.1| PREDICTED: replication factor C 5-like [Saccoglossus kowalevskii]
          Length = 331

 Score = 68.9 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 42/246 (17%), Positives = 83/246 (33%), Gaps = 38/246 (15%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           +   + ++    +   RP  LEE     +  S +  FI+      + L H+LF GPPG G
Sbjct: 1   MAEEHDNRNLPWVEKYRPNKLEELISHADILSTIDRFIK-----EDRLPHLLFYGPPGTG 55

Query: 67  KTTLAQVVA------RELGVNFRSTSGPVIAKAGDLAA-LLTNLEDRDVL-------FID 112
           KT+    VA      +E        +       G +   +L+    R +         +D
Sbjct: 56  KTSTILAVAKQLYSPKEFNSMVLELNASDDRGIGIVRGPVLSFASTRTIFKSGFKIVILD 115

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E   ++   +  L   +E F       E      +   LS+                +Q 
Sbjct: 116 EADAMTNDAQNALRRVIEKF------TENTRFCLICNYLSKIIP------------AIQS 157

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R     R    + + +   ++   +   + VT++    +   + G  R +  +L+     
Sbjct: 158 RC-TRFRFGPLDNQQMVPRLEHVIQQERVDVTEDGMNALVTLANGDMRKSLNILQSTSMA 216

Query: 233 AEVAHA 238
            +V + 
Sbjct: 217 YDVVNE 222


>gi|240171031|ref|ZP_04749690.1| DNA polymerase III subunits gamma and tau [Mycobacterium kansasii
           ATCC 12478]
          Length = 598

 Score = 68.9 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 48/235 (20%), Positives = 82/235 (34%), Gaps = 19/235 (8%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T  E  GQ      L + +EA +         LF GP G GKT+ A+++AR
Sbjct: 2   ALYRKYRPATFAEVVGQEHVTEPLSIALEAGRINHAY----LFSGPRGCGKTSSARILAR 57

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAME 130
            L      T+ P       LA         DV+ +D      +     L       PA  
Sbjct: 58  SLNCAQGPTATPCGVCESCLALAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQS 117

Query: 131 DFQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
            +++ ++         G     + V+        I ATT    +   ++ R         
Sbjct: 118 RYRVFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSR-THHYPFRL 176

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                ++ ++ R  +  G+ + D     +     G+PR    +L ++   +E  H
Sbjct: 177 LPPRTMRGLIGRICEQEGVVIDDAVYPLVIRAGGGSPRDTLSVLDQLVAGSEGDH 231


>gi|253698849|ref|YP_003020038.1| DNA polymerase III subunits gamma/tau [Geobacter sp. M21]
 gi|251773699|gb|ACT16280.1| DNA polymerase III, subunits gamma and tau [Geobacter sp. M21]
          Length = 579

 Score = 68.9 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 51/309 (16%), Positives = 95/309 (30%), Gaps = 47/309 (15%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN- 81
           RP+T  +  GQ      LK  I+  +         LF G  G+GKT+ A+++A+ L    
Sbjct: 11  RPQTFSDLVGQEHVSQTLKNAIDGGRVAHA----FLFTGARGVGKTSSARILAKALNCES 66

Query: 82  -----------------------FRSTSGPVIAKAGDLAALLTNLE------DRDVLFID 112
                                       G       D+  L  N++         +  ID
Sbjct: 67  GLTVEPCNTCSTCLEITEGNSVDVFEIDGASNTGVDDIRELRDNIKYLPSRSRYKIFIID 126

Query: 113 EIHRLSIIVEEILYPAMED--FQLDLMVGEGPSARSVKINLSRFTLIAATTRV-GLLTNP 169
           E+H L+      L   +E+    +  +       +     LSR             + + 
Sbjct: 127 EVHMLTTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFDFKRIALPRIVSR 186

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           L  R+ +         E L  + ++G      +++          ++        LL  V
Sbjct: 187 L--RYIVDQEGVQVSDEALAVVARKGDGSMRDSLSTLDQVLAFCGNQVADADVAALLGVV 244

Query: 230 RDFAEVAHAKTITREIADAALLRLAI-DKMGFDQLDLRYLTMIARNFGGGPVGIETISAG 288
                +   + +  +    AL  +A  D  G+     ++   +   F         I   
Sbjct: 245 DRRLIMDGCRAVLSKEVRCALQIVAQVDSFGYSM--RQFCRELIDQFRN-----VAILKA 297

Query: 289 LSEPRDAIE 297
           + EP D +E
Sbjct: 298 IGEPGDLLE 306


>gi|288574784|ref|ZP_06393141.1| DNA polymerase III, subunits gamma and tau [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570525|gb|EFC92082.1| DNA polymerase III, subunits gamma and tau [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 554

 Score = 68.9 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 85/224 (37%), Gaps = 20/224 (8%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
              RP+T ++ TGQ  A   ++  +    +R       LF GP G GKTT+A++ A+ + 
Sbjct: 7   RRYRPQTFQDVTGQNTAVEVVRRAV----SRGNVGHAYLFSGPRGCGKTTVARLFAKAVN 62

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL-----YPAMEDFQL 134
            + R   G       D    ++     DV+ ID      +     L       +      
Sbjct: 63  CSDR-GKGGEPCNVCDSCRSISEGNSLDVVEIDGASNNRVDEIRDLKTHVGLASFSSPYK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             +V E             ++++        I ATT    +   ++ R    I  +   +
Sbjct: 122 VYIVDEVHMLSIGAFNALLKTLEEPPESVLFILATTEPFKVPVTIRSRCQ-HIPFHSIGL 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           ED+ + ++   +L  +   D++  EIA ++ G  R    LL + 
Sbjct: 181 EDMVSRLRYVTELEKVKCDDDSLWEIARQADGGLRDGLSLLEQA 224


>gi|219109832|ref|XP_002176669.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217411204|gb|EEC51132.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 350

 Score = 68.9 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 48/261 (18%), Positives = 89/261 (34%), Gaps = 26/261 (9%)

Query: 2   MDREGLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M  E      + Q++   +   RP++L+E + Q E  + L+  +   +     L H+L  
Sbjct: 1   MSDELATQPTLVQDNRPWVERYRPKSLQEVSHQTEVVATLQNAVTTGR-----LPHLLLY 55

Query: 61  GPPGLGKTTLAQVVAR------ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEI 114
           GPPG GKT++A  + R      +        +         +   + +     V      
Sbjct: 56  GPPGSGKTSVALALCRQLWHPSQWRRRVLELNASDERGISVVRNKIKHFASLTVA----- 110

Query: 115 HRLSIIVEEILYPAMEDFQLDLMVGEGPSA-----RSVKINLSRFTLIAATTRVGLLTNP 169
            + +  +E    P  +   LD      P A     R ++ +      I     V  +  P
Sbjct: 111 -KGNNDMENYPNPPFKIIILDEADTVTPDAQAALRRIIEAHSKITRFILICNYVTRVIEP 169

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIA-MRSRGTPRIAGRLLRR 228
           L  R     R        +K  ++  A     + +++   +     + G  R A   L+ 
Sbjct: 170 LASRCA-KFRFQSLPPSSMKARLEWIANEQNCSESEKDLLDDILEYADGDMRQAVTTLQS 228

Query: 229 VRDFAEVAHAKTITREIADAA 249
           V   A    AK     +A+ A
Sbjct: 229 VHSLAA-GGAKVDKAALAEIA 248


>gi|207109046|ref|ZP_03243208.1| recombination factor protein RarA [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 83

 Score = 68.9 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 3/82 (3%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           SLL P++LE+F GQ           +A +++     H  F GPPG+GKT+LAQ++A  L 
Sbjct: 5   SLLNPKSLEDFLGQEHLVGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIACMLE 62

Query: 80  VNFRSTSGPVIAKAGDLAALLT 101
                 +     K  DL   L 
Sbjct: 63  RPILLFNATDF-KLEDLRLKLK 83


>gi|108801872|ref|YP_642069.1| DNA polymerase III subunits gamma and tau [Mycobacterium sp. MCS]
 gi|119871025|ref|YP_940977.1| DNA polymerase III subunits gamma and tau [Mycobacterium sp. KMS]
 gi|108772291|gb|ABG11013.1| DNA polymerase III, tau subunit [Mycobacterium sp. MCS]
 gi|119697114|gb|ABL94187.1| DNA polymerase III, tau subunit [Mycobacterium sp. KMS]
          Length = 616

 Score = 68.9 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 46/245 (18%), Positives = 82/245 (33%), Gaps = 27/245 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T  E  GQ      L   + A +         LF GP G GKT+ A+++AR
Sbjct: 2   ALYRKYRPATFAEVVGQEHVTEPLSTALSAGRINHAY----LFSGPRGCGKTSSARILAR 57

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR----DVLFIDEIHRLSIIVEEILY------ 126
            L        GP     G   + +    +     DV  +D      +     L       
Sbjct: 58  SLNCE----QGPTPTPCGTCDSCVALAPNGPGNMDVTELDAASHGGVDDTRELRDRAFYA 113

Query: 127 PAMEDFQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
           PA   +++ ++         G     + V+        + ATT    +   ++ R     
Sbjct: 114 PAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFVFATTEPEKVLPTIRSR-THHY 172

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
                  + ++T+++R     G++V D     +     G+PR    +L ++   A     
Sbjct: 173 PFRLLAPKTMRTLLERICADEGVSVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAAGNRV 232

Query: 239 KTITR 243
           +    
Sbjct: 233 EYGRA 237


>gi|81427950|ref|YP_394949.1| DNA-directed DNA polymerase III, gamma/tau subunit [Lactobacillus
           sakei subsp. sakei 23K]
 gi|78609591|emb|CAI54637.1| DNA-directed DNA polymerase III, gamma/tau subunit [Lactobacillus
           sakei subsp. sakei 23K]
          Length = 571

 Score = 68.9 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 54/295 (18%), Positives = 102/295 (34%), Gaps = 32/295 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  ++  GQ      LK  I       +     LF GP G GKT+ A++ A+ +  ++
Sbjct: 11  RPQRFDDVVGQETMTQTLKNAI----ITKQTSHAYLFTGPRGTGKTSAAKIFAKAINCHY 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
               G    +     A+     + DV+ ID      +  +  I ++  Y   +      +
Sbjct: 67  -QKDGEPCNECETCRAITAGALN-DVIEIDAASNNGVEEIRDIRDKAKYAPTQADYKIYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++   +    I ATT V  +   +  R             DL
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPANVVFILATTEVHKVPATIISRTQ-RFNFKRITAADL 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              +    +   +     A   IA  + G  R A  +L +V  F++         ++  +
Sbjct: 184 FKRMAYILEQKEMTYDPAALKVIAKAAEGGMRDALSILDQVLSFSDNHVTLENALDVTGS 243

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVG-IETISAGLSEPRDAIEDLIEP 302
               L  D          Y+  I  +     +  ++ I A   + +  +EDLIE 
Sbjct: 244 LTEALLAD----------YVQTIHDHAPKAALQLLQQILAEGKDAQRFVEDLIEY 288


>gi|164686926|ref|ZP_02210954.1| hypothetical protein CLOBAR_00526 [Clostridium bartlettii DSM
           16795]
 gi|164604029|gb|EDQ97494.1| hypothetical protein CLOBAR_00526 [Clostridium bartlettii DSM
           16795]
          Length = 551

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 81/232 (34%), Gaps = 25/232 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RP+   +  GQ      LK  IE            LF G  G GKT+ A++ +R
Sbjct: 7   ALYRVYRPKNFSDVIGQEHIVRTLKNQIENNNVGHAY----LFCGTRGTGKTSTAKIFSR 62

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHR-----LSIIVEEILYPAM 129
            +         P      +       LED+   V+ ID         +  + E + Y   
Sbjct: 63  AVNCTNLHNDEP----CNECENCREILEDKTMDVVEIDAASNNSVDDIRELRENVKYSPA 118

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +      ++ E             ++++   S    I ATT    +   +  R       
Sbjct: 119 KAKYKVYIIDEVHMLSQGAFNALLKTLEEPPSYVIFILATTEPHKIPATILSRCQ-RFDF 177

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
               ++D+ + ++   +  G+   ++A   IA  S+G  R A  +L +   F
Sbjct: 178 KRVTVKDISSRMRYICEKEGIEADEKALNLIARNSQGALRDALSILDQCISF 229


>gi|291546690|emb|CBL19798.1| DNA polymerase III, subunits gamma and tau [Ruminococcus sp. SR1/5]
          Length = 540

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 82/230 (35%), Gaps = 21/230 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP   ++  GQ    + L   I+A +         LF G  G GKTT+A+++A+
Sbjct: 5   ALYRKFRPDNFDDVKGQDHIVTTLTNQIKANRIGHAY----LFCGTRGTGKTTVAKILAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +         P    A  +   +      +V+ ID      +  +  I EE+ Y   E 
Sbjct: 61  AVNCEHPVNGSPCNECA--MCKAIQAGTAMNVIEIDAASNNGVDNIREIREEVAYRPTEG 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++   S    I ATT    +   +  R       + 
Sbjct: 119 KYKVYIIDEVHMLSTGAFNALLKTLEEPPSYVIFILATTEAHKIPITILSRCQ-RYDFHR 177

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
             I+ +   +       G+   ++A   +A +  G+ R A  LL +   F
Sbjct: 178 ISIDTIAARLSELLTAEGVEAEEKAVRYVAKKGDGSMRDALSLLDQCISF 227


>gi|182416378|ref|YP_001821444.1| DNA polymerase III, subunits gamma and tau [Opitutus terrae PB90-1]
 gi|177843592|gb|ACB77844.1| DNA polymerase III, subunits gamma and tau [Opitutus terrae PB90-1]
          Length = 395

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 81/227 (35%), Gaps = 25/227 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN- 81
           RP+T ++  GQ      LK  I    AR       LFVGP G GKT+ A++ A+ L    
Sbjct: 14  RPQTFDDVVGQDHVVRTLKNAI----ARNRIAHAYLFVGPRGTGKTSTARIFAKALNCTD 69

Query: 82  -FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQL 134
             ++   P       +A         DV+ ID      +     L       PA   +++
Sbjct: 70  GPKADFDPNDPACKAIAE----GSHLDVIEIDGASNNGVDQVRDLRDTVQYAPAQGRYKV 125

Query: 135 DLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++               ++++        + ATT    +   +  R      L     +
Sbjct: 126 YIIDEVHMLSAAAFNALLKTLEEPPGHVKFVFATTDPQKVLPTIISRCQ-RFDLKPIPPD 184

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
            +   +++ A    + ++  A   IA  + G  R A  +L ++  F 
Sbjct: 185 LIIARLKQIAASEKITISAAALECIARMADGGMRDAQSILDQMISFC 231


>gi|306778610|ref|ZP_07416947.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
           tuberculosis SUMu002]
 gi|306790999|ref|ZP_07429321.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
           tuberculosis SUMu004]
 gi|306791318|ref|ZP_07429620.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
           tuberculosis SUMu005]
 gi|308328340|gb|EFP17191.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
           tuberculosis SUMu002]
 gi|308332586|gb|EFP21437.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
           tuberculosis SUMu004]
 gi|308340077|gb|EFP28928.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium
           tuberculosis SUMu005]
          Length = 578

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 48/237 (20%), Positives = 82/237 (34%), Gaps = 23/237 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP +  E  GQ    + L V ++A +         LF GP G GKT+ A+++AR
Sbjct: 2   ALYRKYRPASFAEVVGQEHVTAPLSVALDAGRINHAY----LFSGPRGCGKTSSARILAR 57

Query: 77  ELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAM 129
            L      T+ P  V      LA         DV+ +D      +     + +   Y  +
Sbjct: 58  SLNCAQGPTANPCGVCESCVSLAP--NAPGSIDVVELDAASHGGVDDTRELRDRAFYAPV 115

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +      +V E             + V+        I ATT    +   ++ R       
Sbjct: 116 QSRYRVFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSR-THHYPF 174

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                  ++ ++ R  +  G+ V D     +     G+PR    +L ++   A   H
Sbjct: 175 RLLPPRTMRALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTH 231


>gi|238537901|pdb|3GLG|B Chain B, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
           Loader Bound To Primer-Template Dna
 gi|238537902|pdb|3GLG|C Chain C, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
           Loader Bound To Primer-Template Dna
 gi|238537903|pdb|3GLG|D Chain D, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
           Loader Bound To Primer-Template Dna
 gi|238537906|pdb|3GLG|G Chain G, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
           Loader Bound To Primer-Template Dna
 gi|238537907|pdb|3GLG|H Chain H, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
           Loader Bound To Primer-Template Dna
 gi|238537908|pdb|3GLG|I Chain I, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
           Loader Bound To Primer-Template Dna
          Length = 395

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 52/306 (16%), Positives = 106/306 (34%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 33  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 86

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 87  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 146

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++        + AT     L   +  R  +   L   ++E +
Sbjct: 147 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATADPQKLPVTILSRC-LQFHLKALDVEQI 205

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +A    A   +A  + G+ R A  L     D A  +    ++ +   A
Sbjct: 206 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAIASGDGQVSTQAVSA 261

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L  D+       L  +  +    G   + +   +A      +A+   +   + +  
Sbjct: 262 MLGTLDDDQA------LSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIA 315

Query: 309 FIQRTP 314
            +Q +P
Sbjct: 316 MVQLSP 321


>gi|229495419|ref|ZP_04389154.1| DNA polymerase III, subunit gamma and tau [Porphyromonas
           endodontalis ATCC 35406]
 gi|229317862|gb|EEN83760.1| DNA polymerase III, subunit gamma and tau [Porphyromonas
           endodontalis ATCC 35406]
          Length = 594

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 45/252 (17%), Positives = 86/252 (34%), Gaps = 24/252 (9%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP + E   GQ      L+  I     + +     LF GP G+GKT+ A++ AR +
Sbjct: 9   ARKFRPDSFESLLGQEAVSETLRRAI----LQQKTAHAYLFCGPRGVGKTSAARIFARAI 64

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHR-----LSIIVEEILYPAMEDFQ 133
                  SG    +     A        +V  +D         +  ++EE+  P      
Sbjct: 65  NCASPLASGEACGECDSCRA-FAEQRSFNVFEMDAASNNSANDIRQLIEEVNIPPQVGRY 123

Query: 134 LDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
              ++ E             ++++        I ATT    +   +  R  +        
Sbjct: 124 KIYIIDEVHMLSTAAFNAFLKTLEEPPEYVVFIMATTEKQKILPTILSRCQV-FDFKPIP 182

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            + +   ++  A+L  + V ++A   IA ++ G  R A  +  R+  +        ++  
Sbjct: 183 SDVIIGQLRHIAQLEEIQVEEKALELIARKADGGMRDALSVFDRIASYT----DGEVSYS 238

Query: 245 IADAALLRLAID 256
               +L  L  D
Sbjct: 239 RTLESLNILDDD 250


>gi|219117762|ref|XP_002179670.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217408723|gb|EEC48656.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 338

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 77/226 (34%), Gaps = 17/226 (7%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+ LE+   Q +  S++   I++     E L H+L  GPPG GKT+     A+
Sbjct: 18  PWVEKYRPQRLEDLVSQDDIVSSITNLIDS-----ENLPHLLLYGPPGTGKTSTIVAAAK 72

Query: 77  ELGVNFRSTSGPVIA-KAGDLAAL---LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
            +  +  + S   +   A D   +      +++    F       +  ++ I+    +  
Sbjct: 73  RMYGSSSAYSSMTLELNASDARGIDVVRNEIKE----FAGTKQLFNKGIKLIILDEADAM 128

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
             D    +    R ++              V  +   LQ R     R      + ++  +
Sbjct: 129 TSD---AQFALRRIIEKYTKNARFCLVCNYVSKIIPALQSRC-TRFRFAPLSRDQIEGRL 184

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
              A+      T +    I   S G  R    LL+     AEV   
Sbjct: 185 TEVAEAEKCKTTQDGIDAILRLSGGDMRRVLNLLQSTAMSAEVVDE 230


>gi|330718916|ref|ZP_08313516.1| DNA polymerase III subunits gamma and tau [Leuconostoc fallax KCTC
           3537]
          Length = 381

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 47/275 (17%), Positives = 84/275 (30%), Gaps = 50/275 (18%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RPRT ++  GQ      L+  I+  +         LF GP G GKT+ A++ A+
Sbjct: 5   ALYRVYRPRTFDDMVGQEIITQTLQNAIQTGQTGHAY----LFSGPRGTGKTSAAKIFAK 60

Query: 77  ELG-----------VNFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSI 119
            +             +             ++  +  +           +  IDE+H LS 
Sbjct: 61  AVNGIPADQDDAQIPDIIEIDAASNNGVDEIRNIRDSANYAPIEAQFKIYIIDEVHMLST 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
                L   +E+                    +    I ATT    +   +  R      
Sbjct: 121 GAFNALLKTLEE------------------PPANVKFILATTEPQKIPATILSRTQ-RFE 161

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
                 + ++  +        +A  ++A   IA  + G  R A  +L +V  F +     
Sbjct: 162 FKRISTQQMQQRMSYILDQQNIAYDEDALRIIANAAEGGMRDALSILDQVIAFGQDHVTV 221

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARN 274
               ++  +A      D          YL  I   
Sbjct: 222 ENALQVTGSATTTQLFD----------YLQSIIDY 246


>gi|325142631|gb|EGC65022.1| DNA polymerase III, subunits gamma and tau [Neisseria meningitidis
           961-5945]
          Length = 709

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 51/303 (16%), Positives = 90/303 (29%), Gaps = 63/303 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T  +  GQ      L+  ++  +     L H  L  G  G+GKTT+A+++A+ L   
Sbjct: 11  RPKTFADLVGQEHVVKALRNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCE 65

Query: 82  FRS------------------------TSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                                ++  +L N +         V  I
Sbjct: 66  NAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYII 125

Query: 112 DEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+H LS      +   +E+    +  ++      +     LSR                
Sbjct: 126 DEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNM------- 178

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
                           + +   +        +A    A   +   + G+ R A  LL + 
Sbjct: 179 --------------TAQQVADHLAHVLDSEKIAYEPAALQLLGRAAAGSMRDALSLLDQA 224

Query: 230 RDFAEVAHAKTITREIADAALLRLAIDKM-GFDQLDLRYLTMIARNFGGGPVGIETISAG 288
                   A+   R++  A   +   + + G    D   LT  AR      VG +     
Sbjct: 225 IALGSGKVAENDVRQMIGAVDKQYLYELLTGIINQDGAALTAKAREMAACAVGFDN---A 281

Query: 289 LSE 291
           L E
Sbjct: 282 LGE 284


>gi|323487365|ref|ZP_08092664.1| hypothetical protein HMPREF9474_04415 [Clostridium symbiosum
           WAL-14163]
 gi|323694200|ref|ZP_08108376.1| DNA polymerase III [Clostridium symbiosum WAL-14673]
 gi|323399326|gb|EGA91725.1| hypothetical protein HMPREF9474_04415 [Clostridium symbiosum
           WAL-14163]
 gi|323501673|gb|EGB17559.1| DNA polymerase III [Clostridium symbiosum WAL-14673]
          Length = 536

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 81/224 (36%), Gaps = 21/224 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP + +E  GQ      LK  I + +         LF G  G GKT++A++ A+ +    
Sbjct: 11  RPVSFDEVKGQDHIVKTLKNQITSGRIGHAY----LFCGTRGTGKTSIAKIFAKAVNCES 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P   +      + ++     V+ ID      +  +  I +++ YP  E      +
Sbjct: 67  PVDGSP-CGECSMCRQIASSASLN-VVEIDAASNNGVENIRDIRDQVQYPPTEGRYRVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++   S    I ATT V  +   +  R           I+ +
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPSYVIFILATTEVHKIPITILSRCQRYDFKRI-TIDTI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
              +    +   + V + A   +A  + G+ R A  LL +   F
Sbjct: 184 SARLHELTQAEQIDVEERALRYVAKAADGSMRDALSLLDQCTAF 227


>gi|308479944|ref|XP_003102180.1| hypothetical protein CRE_06764 [Caenorhabditis remanei]
 gi|308262335|gb|EFP06288.1| hypothetical protein CRE_06764 [Caenorhabditis remanei]
          Length = 365

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 61/191 (31%), Gaps = 34/191 (17%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           +  V      +   RP  L+E     +    L  FIE        L H+LF GPPG GKT
Sbjct: 4   TPAVVSNLPWVEKYRPSKLDELVAHEQVVKTLTKFIE-----NRTLPHLLFYGPPGTGKT 58

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDV-------------------- 108
           T     AR++    R +S  +   A D   +  ++    +                    
Sbjct: 59  TTVLAAARKMYSPARMSSMVLELNASDERGI--DVVRNTIVNFAQTKGLQSYATASSSDQ 116

Query: 109 -----LFIDEIHRLSIIVEEILYPAMEDFQ--LDLMVGEGPSARSVKINLSRFTLIAATT 161
                + +DE   ++   +  L   +E +   +   +     A  +    SR T      
Sbjct: 117 VPFKMVILDEADAMTKDAQNALRRVIEKYTDNVRFCIICNYLASIIPAIQSRCTRFRFAP 176

Query: 162 RVGLLTNPLQD 172
               L  P  D
Sbjct: 177 LDQKLIVPRLD 187


>gi|309806689|ref|ZP_07700685.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners
           LactinV 03V1-b]
 gi|308166994|gb|EFO69177.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners
           LactinV 03V1-b]
          Length = 587

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 49/265 (18%), Positives = 97/265 (36%), Gaps = 22/265 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPRT E   GQ   C  L+     +  R +     LF GP G GKT+ A++ A+ +    
Sbjct: 15  RPRTFEAVVGQSAICDTLR----NSIKRHKISHAFLFSGPRGTGKTSCAKIFAKAINCMD 70

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P    +  LAA    L   D++ ID      +  +  I +++ Y   + +    +
Sbjct: 71  SKDGEPCNQCSNCLAADKGIL--NDIIEIDAASNNGVDEIRAIRDKVKYAPTQGYYKVYI 128

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT +  +   +  R            + L
Sbjct: 129 IDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRI-SNDQL 187

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              ++       +A  +++   IA  + G  R +  +L ++  + +       T  I   
Sbjct: 188 VARMKFILDQEKIAYDEKSLQVIAQVADGGMRDSLSILDQILSYDQAKINYQDTLAITGY 247

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIAR 273
           A  ++ I+ +  D L+ +    +  
Sbjct: 248 A-DQVKIEALFLDLLNKKTSQALEE 271


>gi|258510125|ref|YP_003183559.1| DNA polymerase III, subunits gamma and tau [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257476851|gb|ACV57170.1| DNA polymerase III, subunits gamma and tau [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 586

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/259 (16%), Positives = 79/259 (30%), Gaps = 54/259 (20%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP+T E+  GQ      L   +++ +         LF GP G GKT+ A+++A+
Sbjct: 5   ALYRAYRPQTFEDLVGQPHVRQTLTNALKSGQLAHAY----LFCGPRGTGKTSTAKLLAK 60

Query: 77  ELGV-------------------------NFRSTSGPVIAKAGDLAALLTN------LED 105
            +                           + +           ++  L  +      +  
Sbjct: 61  AVNCLQPRDGFEPCNACEACTSIQRGSNVDVQEIDAASNRGVDEIRDLRDHVHYLPTMAK 120

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
           + V  +DE+H L+      L   +E+                    +    + ATT    
Sbjct: 121 KKVYIVDEVHMLTPEAFNALLKTLEE------------------PPAHVLFVLATTEPHR 162

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           L   +  R            E +   ++  A+  G+   D A   +A  + G  R A  L
Sbjct: 163 LPATIISRCQ-RFDFRRIAPEAIVERLRLVAQSQGIEAADSALWRLAEAADGGLRDALAL 221

Query: 226 LRRVRDFAEVAHAKTITRE 244
             +   F       T   +
Sbjct: 222 FEQAAAFGNGRIDDTTVAD 240


>gi|224541626|ref|ZP_03682165.1| hypothetical protein CATMIT_00797 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525464|gb|EEF94569.1| hypothetical protein CATMIT_00797 [Catenibacterium mitsuokai DSM
           15897]
          Length = 600

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 81/224 (36%), Gaps = 23/224 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T ++  GQ    + LK  I+  K         LF GP G GKTT+A+++A+ +    
Sbjct: 13  RPQTFKDVAGQEAIITTLKHAIDEKKIAHAY----LFCGPRGTGKTTVAKLLAKAVNCTG 68

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                        +     N    DV+ ID      +  +  +++++ Y   +      +
Sbjct: 69  NPKPCGECENCKQI----ENGTHPDVIEIDAASNNGVEEVRSLIDKVKYAPTQGQYKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++   +    I ATT    +   +  R            +++
Sbjct: 125 IDEVHMMSPGAFNALLKTLEEPPAHVIFILATTEPHKILPTIISRCQ-RFDFTRLTDQEM 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
              +Q   K  G    D +   IA  + G  R A  +L +   +
Sbjct: 184 VQRMQYVLKEEGKTYDDGSLELIARLANGGMRDALSILEQCLAY 227


>gi|256374358|ref|YP_003098018.1| DNA polymerase III subunits gamma/tau [Actinosynnema mirum DSM
           43827]
 gi|255918661|gb|ACU34172.1| DNA polymerase III, subunits gamma and tau [Actinosynnema mirum DSM
           43827]
          Length = 713

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/245 (17%), Positives = 81/245 (33%), Gaps = 27/245 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T  E  GQ      L++ + A +         LF GP G GKT+ A+++AR
Sbjct: 8   ALYRKYRPATFAEVIGQEHVTDPLRIALGAGRVNHAY----LFSGPRGCGKTSSARILAR 63

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR----DVLFID-----EIHRLSIIVEEILYP 127
            L        GP     G+  + +    +     DV+ +D      +     + E+  Y 
Sbjct: 64  SLNC----AKGPTPDPCGECNSCVGLAPNGPGSVDVVELDAASHGGVDDTRELREKAFYA 119

Query: 128 AMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
             E      ++ E             + V+        I ATT    +   ++ R     
Sbjct: 120 PAEAKYRVFIIDEAHMVTTQGFNALLKIVEEPPEHLIFIFATTEPDKVLPTIRSR-THHY 178

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
                    ++ +++R     G+AV       +     G+ R    ++ ++   A     
Sbjct: 179 PFRLIPPVSMRALLERNCAAEGVAVEPSVFPLVIRAGGGSARDTQSVMDQLLSGAGPEGV 238

Query: 239 KTITR 243
           +    
Sbjct: 239 RYDRA 243


>gi|150400075|ref|YP_001323842.1| replication factor C large subunit [Methanococcus vannielii SB]
 gi|166977386|sp|A6URV8|RFCL_METVS RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|150012778|gb|ABR55230.1| AAA ATPase central domain protein [Methanococcus vannielii SB]
          Length = 492

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 8/110 (7%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +  +   RP++L +  G  +    L  +IE +  R      VL  GPPG GKTT+A  +A
Sbjct: 2   EEWVEKYRPKSLNDVAGHSKTKEALCYWIE-SFIRGNKQKPVLLFGPPGSGKTTMAHAIA 60

Query: 76  RELGVNFRSTSGP------VIAKAGDLAALLTNL-EDRDVLFIDEIHRLS 118
            +   +    +        VI++    AA   +L   R ++ +DE+  LS
Sbjct: 61  NDYNFDVIELNASDKRNKDVISQVVGTAATSKSLTGKRTLIVLDEVDGLS 110


>gi|242011782|ref|XP_002426625.1| ATP-dependent metalloprotease, putative [Pediculus humanus
           corporis]
 gi|212510778|gb|EEB13887.1| ATP-dependent metalloprotease, putative [Pediculus humanus
           corporis]
          Length = 720

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 54/263 (20%), Positives = 87/263 (33%), Gaps = 31/263 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH-------VLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  E    L+  +E  K   +           VL VGPPG GKT LA+ +A E 
Sbjct: 286 TFSDVKGVDEVKEELQEIVEFLKNPQKFSSMGGTLQKGVLLVGPPGTGKTLLARAIAGEA 345

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAME 130
            V F   SG           A  +  L  + + +   ++FIDEI  +       +     
Sbjct: 346 NVPFFHASGSEFDEIFVGEGARRIRNLFKSAKAKAPAIIFIDEIDCVGSKRNSTMLHPYA 405

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           +  ++ ++ E       +       ++ AT R   L + L       + +       +  
Sbjct: 406 NQTINQLLSEMDGFAKNE----NVIVLGATNRKSDLDSALLRPGRFDVEVMEILELYVNK 461

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           IV +   +  LA                  I      R    A V  A  +T E  + A 
Sbjct: 462 IVSKNIDIEKLAKATAGCS-----GAHLEAIVNHAAIR----AAVEGAPFVTMEHIEEAK 512

Query: 251 LRLAID---KMGFDQLDLRYLTM 270
            ++ I    K   +  D   LT 
Sbjct: 513 DKIMIGPKRKQATESYDDNLLTA 535


>gi|326475381|gb|EGD99390.1| DNA replication factor C subunit Rfc2 [Trichophyton tonsurans CBS
           112818]
          Length = 396

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 49/274 (17%), Positives = 88/274 (32%), Gaps = 52/274 (18%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARA-----EALDHVLFVGPPG 64
            +  Q    +   RP+TL++ T Q    S L+  + A+  +      + L H+LF G PG
Sbjct: 27  ESDQQAQPWVEKYRPKTLDDVTAQDHTISVLQRNLHASNVKLQYCLFKPLPHMLFYGSPG 86

Query: 65  LGKTTLAQVVAR-------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD---- 107
            GKT+    +++             EL  +       V  K  D A +  +    D    
Sbjct: 87  TGKTSTILAMSKSLFGPALVRSRVLELNASDERGINIVREKIKDFARMHLSQPPTDPAYR 146

Query: 108 ---------VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIA 158
                    ++ +DE   ++   +  L   ME +                   SR T   
Sbjct: 147 SQYPCPPFKIIILDEADSMTHDAQSALRRTMEKY-------------------SRITRFC 187

Query: 159 A-TTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRG 217
                V  + +P+  R     R    +    ++ +   A++  L + D     +   S G
Sbjct: 188 LVCNYVTRIIDPVASRCS-KFRFKVLDGSAAQSRLIEIARMEKLDLEDNVVETLLRCSDG 246

Query: 218 TPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
             R A   ++     A     K       +  L 
Sbjct: 247 DLRKAITFMQSSARLARYGSGKKKDSSDKEMELD 280


>gi|325911570|ref|ZP_08173978.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners UPII
           143-D]
 gi|325476556|gb|EGC79714.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners UPII
           143-D]
          Length = 587

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 49/265 (18%), Positives = 97/265 (36%), Gaps = 22/265 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPRT E   GQ   C  L+     +  R +     LF GP G GKT+ A++ A+ +    
Sbjct: 15  RPRTFEAVVGQSAICDTLR----NSIKRHKISHAFLFSGPRGTGKTSCAKIFAKAINCMD 70

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P    +  LAA    L   D++ ID      +  +  I +++ Y   + +    +
Sbjct: 71  SKDGEPCNQCSNCLAADKGIL--NDIIEIDAASNNGVDEIRAIRDKVKYAPTQGYYKVYI 128

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT +  +   +  R            + L
Sbjct: 129 IDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRI-SNDQL 187

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              ++       +A  +++   IA  + G  R +  +L ++  + +       T  I   
Sbjct: 188 VARMKFILDQEKIAYDEKSLQVIAQVADGGMRDSLSILDQILSYDQAKINYQDTLAITGY 247

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIAR 273
           A  ++ I+ +  D L+ +    +  
Sbjct: 248 A-DQVKIEALFLDLLNKKTSQALEE 271


>gi|291532777|emb|CBL05890.1| DNA polymerase III, subunits gamma and tau [Megamonas hypermegale
           ART12/1]
          Length = 334

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 80/224 (35%), Gaps = 21/224 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+   +  GQ      L   I   K         LF GP G GKT+ A+++A+ L    
Sbjct: 11  RPQDFSDLIGQEHISETLSNAISTGKVAHAY----LFSGPRGTGKTSTAKILAKALNCEH 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
             T  P           + +    DV  ID      I  +  + E + +  ++      +
Sbjct: 67  GPTPTPCNQCV--CCQKINDGSFMDVFEIDAASNRGIDEIRDLRETVKFAPVDGKYKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++   S    I ATT V  +   +Q R          + + L
Sbjct: 125 IDEVHMLTTEAFNALLKTLEEPPSHVVFILATTEVHKVPITIQSRCQRYDFKRITKDDIL 184

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           K +V       GL    +A   IA+++ G  R A  LL +   F
Sbjct: 185 KRLVM-ITDEMGLNADKDALSIIAIQADGGMRDALSLLDQCLAF 227


>gi|169849253|ref|XP_001831330.1| DNA replication factor [Coprinopsis cinerea okayama7#130]
 gi|116507598|gb|EAU90493.1| DNA replication factor [Coprinopsis cinerea okayama7#130]
          Length = 347

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 45/239 (18%), Positives = 77/239 (32%), Gaps = 37/239 (15%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
                    +   RP +LE+     +  + +  FIE        L H+LF GPPG GKT+
Sbjct: 22  SEEVDNLPWVEKYRPVSLEDVVSHQDITTTIDRFIE-----KNRLPHLLFYGPPGTGKTS 76

Query: 70  LAQVVAR------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-DVLFIDEIHR 116
               VAR            EL  +       V  +    A   T       ++ +DE   
Sbjct: 77  TILAVARRIYGSDYKKQILELNASDDRGIDVVREQVKQFAETRTLFSKGYKLIILDEADM 136

Query: 117 LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
           ++   +  L   +E +                              V  +   +Q R   
Sbjct: 137 MTQQAQAALRRVIEQYT------------------KNVRFCIICNYVNKIAPAIQSRC-T 177

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
             R +   I +++  V R  +   + +T E    +   S+G  R A  +L+      +V
Sbjct: 178 RFRFSPLPIAEVEKQVNRVVEAENVQLTPEGKQALLKLSKGDMRRALNVLQACHAAYDV 236


>gi|300867457|ref|ZP_07112111.1| DNA polymerase III, subunits gamma and tau [Oscillatoria sp. PCC
           6506]
 gi|300334572|emb|CBN57279.1| DNA polymerase III, subunits gamma and tau [Oscillatoria sp. PCC
           6506]
          Length = 664

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 78/242 (32%), Gaps = 20/242 (8%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +      RP+T  +  GQ      L   I   +         LF GP G GKT+ A+++A
Sbjct: 4   EPLHHKYRPQTFADLVGQEAIAQTLSNAIRQDRIA----PAYLFTGPRGTGKTSSARILA 59

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL-----YPAME 130
           + L     +          D+   +      DV+ ID      +     L     +  ++
Sbjct: 60  KSLNCLAGNVPTATPCGKCDVCQGIVEGRTLDVIEIDAASNTGVDSIRDLIERAQFAPVQ 119

Query: 131 DFQLDLMVGEGPSARSVKIN---------LSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
                 ++ E         N           R   + ATT    +   +  R        
Sbjct: 120 CRYKVYVIDECHMLSVSAFNSLLKTLEEPPDRVVFVLATTDAQRVLPTIISRCQ-RFDFR 178

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA-EVAHAKT 240
              +  +   ++  A+   + +  +A   +A  ++G  R A  LL ++   A EV   K 
Sbjct: 179 RIPVVAMTNHLREIAQKENINIAPDAVQMVAQIAQGGLRDAESLLDQLSLLAGEVTVEKV 238

Query: 241 IT 242
             
Sbjct: 239 WD 240


>gi|15615613|ref|NP_243917.1| ATP-dependent proteinase La [Bacillus halodurans C-125]
 gi|10175673|dbj|BAB06770.1| ATP-dependent proteinase La [Bacillus halodurans C-125]
          Length = 556

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 60/295 (20%), Positives = 97/295 (32%), Gaps = 55/295 (18%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD+   L +++S  +     +RP + E+  GQ E    LK     A        HV+  G
Sbjct: 44  MDQLRKL-QSISLSEPLSEKVRPESFEDIVGQKEGIRALK-----AALCGPNPQHVIIYG 97

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSG------------------------------PVIA 91
           PPG+GKT  A++V +E   N  S                                 P+  
Sbjct: 98  PPGVGKTAAARLVLQEAKKNPNSPFAHDAVFVELDGTTARFDERGIADPLIGSVHDPIYQ 157

Query: 92  KAGDL-AALLTNLEDRDV-------LFIDEIHRLSIIVEEILYPAMEDFQLDL----MVG 139
            AG +  A +   +   V       LFIDEI  L  I    L   +ED ++ L       
Sbjct: 158 GAGAMGQAGIPQPKQGAVTKAHGGMLFIDEIGELHSIQINKLLKVLEDRKVFLESAYYSE 217

Query: 140 EGPSARSV------KINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           E             +   + F L+ ATTR+     P      + +     + E++ TI +
Sbjct: 218 ENQQIPRHIHEIFQRGLPADFRLVGATTRMPEEIPPAIRSRCLEVYFRSLKREEIVTIAK 277

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +     G    +    E         R    +++     A       +T    + 
Sbjct: 278 KAVNRLGFKAEE-GVYEKISAYATNGRETVNIVQIAAGMATTEGRHEVTVADVEW 331


>gi|308066974|ref|YP_003868579.1| DNA polymerase III subunit gamma/tau [Paenibacillus polymyxa E681]
 gi|305856253|gb|ADM68041.1| DNA polymerase III subunit gamma/tau [Paenibacillus polymyxa E681]
          Length = 583

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 46/270 (17%), Positives = 91/270 (33%), Gaps = 26/270 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  ++  GQ      L+  I   +         LF GP G GKT+ A+++A+ +    
Sbjct: 11  RPQAFKDMVGQQHIIQTLQNAIRENRTSHAY----LFSGPRGTGKTSAAKILAKAINCEH 66

Query: 83  RSTSGPVIAKAGDLAAL--LTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLD 135
               GP      +  A   +T     DV  ID      +  +  + +++ Y   E     
Sbjct: 67  ----GPAPEPCNECEACKRITAGAVMDVQEIDAASNRGVEEIRDLRDKVKYAPTEVRHKV 122

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             ++++        I ATT    +   +  R           +E
Sbjct: 123 YIIDEVHMLTTEAFNALLKTLEEPPPHVMFILATTEPHRIPATIISRCQ-RFDFRRVSLE 181

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +    +    +   +    +A   IA  S G  R A  +L ++  F +         ++ 
Sbjct: 182 EQTERLDLICRQENIQADSDALQYIARLSDGGMRDAVSVLDQISSFTDGRVTYQQVLDMT 241

Query: 247 -DAALLRLAIDKMGFDQLDLRYLTMIARNF 275
              A  +     +   + D+  +  +  NF
Sbjct: 242 GGIASEQFGKLALALLKEDVGTVLQMIENF 271


>gi|126660295|ref|ZP_01731409.1| DNA polymerase III gamma and tau subunits [Cyanothece sp. CCY0110]
 gi|126618401|gb|EAZ89156.1| DNA polymerase III gamma and tau subunits [Cyanothece sp. CCY0110]
          Length = 373

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 87/221 (39%), Gaps = 21/221 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+++ + TGQ      L   I    A       +L  GP G GKT+ A+++A  L    
Sbjct: 18  RPQSINDLTGQDSVQKVLTRLI----AEDSVPQALLLSGPKGTGKTSTARIIAMSLNCEK 73

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
             T+ P   +  +  A+  N    DV+ +D      +  +  +V +  Y          +
Sbjct: 74  GVTTTP-CGECKNCQAI-QNGNSLDVVELDAASHNGVDDIRKLVADASYAPFSARTRVFI 131

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++   +    + ATT    +   ++ R  +P+R       ++
Sbjct: 132 IDEAHQLSNSAQNAFLKTLEEPNNHTKFLLATTEPHKMLETVRSRC-LPLRFRPISQSEV 190

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
              ++  AK  G ++ D     IA  S+G  R + +LL  V
Sbjct: 191 AKRLEEIAKNEGFSIDDSCLQAIARSSKGGMRDSIQLLFEV 231


>gi|238783570|ref|ZP_04627591.1| DNA polymerase III subunit gamma [Yersinia bercovieri ATCC 43970]
 gi|238715448|gb|EEQ07439.1| DNA polymerase III subunit gamma [Yersinia bercovieri ATCC 43970]
          Length = 656

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 49/244 (20%), Positives = 93/244 (38%), Gaps = 29/244 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L   +   +         LF G  G+GKT++A+++A+ L    
Sbjct: 11  RPQTFADVVGQQHVLTALANSLSLGRIHHAY----LFSGTRGVGKTSIARLLAKGLNCET 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILY------PAMEDFQL 134
             T+ P     G  A  L   + R  D++ ID   R  +     L       PA   F++
Sbjct: 67  GITATP----CGICANCLEIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKV 122

Query: 135 DLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            L+               ++++   +    + ATT    L   +  R  +   L   ++E
Sbjct: 123 YLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRC-LQFHLKVIDVE 181

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
            ++ ++++  ++  ++    A   +A  + G+ R A  L     D A      +IT    
Sbjct: 182 VIRALLEKILQVEQISSDARALQLLARAADGSMRDALSL----TDQAIAMGDGSITTATV 237

Query: 247 DAAL 250
              L
Sbjct: 238 SQML 241


>gi|46125645|ref|XP_387376.1| hypothetical protein FG07200.1 [Gibberella zeae PH-1]
          Length = 354

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 46/242 (19%), Positives = 80/242 (33%), Gaps = 39/242 (16%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   +   RP  L++  G  E    LK+      AR   + HV+  G PG+GKTT    +
Sbjct: 32  ELPWVEKYRPVFLDDVVGNTETVERLKII-----AREGNMPHVIISGMPGIGKTTSVLCL 86

Query: 75  ARE-----LGVNFRSTSGPVIAKAGDLAALLTNLEDRDV---------LFIDEIHRLSII 120
           AR+             +         +   +     + V         + +DE   ++  
Sbjct: 87  ARQLLGDSYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPVGRHKLVILDEADSMTSG 146

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            ++ L   ME +                 N +RF    A  +   +  PLQ R  I    
Sbjct: 147 AQQALRRTMEIYS----------------NTTRFAF--ACNQSNKIIEPLQSRCAILRYA 188

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA-GRLLRRVRDFAEVAHAK 239
              + + LK ++Q   +   +  +D+    +   + G  R A   L      F  V+   
Sbjct: 189 KLTDAQVLKRLMQ-IIEAEKVEFSDDGLAALVFSAEGDMRQAINNLQSTFAGFGFVSGDN 247

Query: 240 TI 241
             
Sbjct: 248 VF 249


>gi|321454581|gb|EFX65746.1| hypothetical protein DAPPUDRAFT_303531 [Daphnia pulex]
          Length = 343

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 65/308 (21%), Positives = 112/308 (36%), Gaps = 42/308 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP T  E  G  +A   L+VF     AR     +++  GPPG+GKTT    +AR
Sbjct: 24  PWVEKYRPTTFGEIVGNEDAVGRLEVF-----AREGNTPNIIIAGPPGVGKTTTILCLAR 78

Query: 77  ------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIHRLSIIVE 122
                       EL  +       V  K    A     L    + ++ +DE   ++   +
Sbjct: 79  TLLGPNYKEAVLELNASNERGIDVVRNKIKMFAQQKVTLPKGRQKIVILDEADSMTEGAQ 138

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           + L   ME F                   +RF L   T+    +  P+Q R  +      
Sbjct: 139 QALRRTMELFSKT----------------TRFALACNTS--DKIIEPIQSRCAMIRYGKL 180

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA-GRLLRRVRDFAEVAHAKTI 241
            + + L+ +++   KL  ++ TD+    I   ++G  R     L   V+ F  V      
Sbjct: 181 TDAQILQKMIE-VCKLEKVSHTDDGLEAIVFTAQGDLRQGLNNLQSTVQGFDHVNSENVF 239

Query: 242 -TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE-PRDAIEDL 299
              +     L++  ID     ++D  Y T+++  +  G    + IS+         I + 
Sbjct: 240 KVCDEPHPMLIKDMIDHCVKGKIDEAY-TIMSHLYELGYAAEDIISSVFRVCRNHTIPEY 298

Query: 300 IEPYMIQQ 307
           I    IQ+
Sbjct: 299 IMLEFIQE 306


>gi|172055030|ref|YP_001806357.1| DNA polymerase III subunit gamma [Cyanothece sp. ATCC 51142]
 gi|171701311|gb|ACB54291.1| DNA polymerase III gamma subunit [Cyanothece sp. ATCC 51142]
          Length = 381

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 87/221 (39%), Gaps = 21/221 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+++ + TGQ      L   I            +L  GP G GKT+ A+++A  L    
Sbjct: 27  RPQSINDLTGQDSVQKVLTRLIT----EDSVPQALLLSGPKGTGKTSTARIIAMSLNCEK 82

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
             T+ P   +  +  A+  N    DV+ +D      +  +  +V +  Y          +
Sbjct: 83  GVTTTP-CGECKNCKAI-QNGNSLDVVELDAASHNGVDDIRKLVADAGYAPFSARTRVFI 140

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++   +    + ATT    +   ++ R  +P+R       ++
Sbjct: 141 IDEAHQLSNSAQNAFLKTLEEPNNHTKFLLATTEPHKMLETVRSRC-LPLRFRPISQSEV 199

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
              ++  AK  G+++ D     IA  S+G  R + +LL  V
Sbjct: 200 AQRLEDIAKKEGVSIDDSCLEAIARSSKGGMRDSIQLLFEV 240


>gi|312873576|ref|ZP_07733623.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners LEAF
           2052A-d]
 gi|311090829|gb|EFQ49226.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners LEAF
           2052A-d]
          Length = 587

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 49/265 (18%), Positives = 97/265 (36%), Gaps = 22/265 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPRT E   GQ   C  L+     +  R +     LF GP G GKT+ A++ A+ +    
Sbjct: 15  RPRTFEAVVGQSAICDTLR----NSIKRHKISHAFLFSGPRGTGKTSCAKIFAKAINCMD 70

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P    +  LAA    L   D++ ID      +  +  I +++ Y   + +    +
Sbjct: 71  SKDGEPCNQCSNCLAADKGIL--NDIIEIDAASNNGVDEIRAIRDKVKYAPTQGYYKVYI 128

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT +  +   +  R            + L
Sbjct: 129 IDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRI-SNDQL 187

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              ++       +A  +++   IA  + G  R +  +L ++  + +       T  I   
Sbjct: 188 VNRMKFILDQEKIAYDEKSLQVIAQVADGGMRDSLSILDQILSYDQAKINYQDTLAITGY 247

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIAR 273
           A  ++ I+ +  D L+ +    +  
Sbjct: 248 A-DQVKIEALFLDLLNKKTSQALEE 271


>gi|290510163|ref|ZP_06549533.1| DNA polymerase III, subunits gamma and tau [Klebsiella sp. 1_1_55]
 gi|289776879|gb|EFD84877.1| DNA polymerase III, subunits gamma and tau [Klebsiella sp. 1_1_55]
          Length = 386

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 88/249 (35%), Gaps = 25/249 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++   +    + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +A    A   ++  + G+ R A  L     D A  +    +T      
Sbjct: 184 RHQLEHILGEEQIAFEPRALQLLSRAADGSLRDALSL----TDQAIASGEGQLTAASVST 239

Query: 249 ALLRLAIDK 257
            L  L  D+
Sbjct: 240 MLGTLDDDQ 248


>gi|259501365|ref|ZP_05744267.1| DNA polymerase III [Lactobacillus iners DSM 13335]
 gi|259167218|gb|EEW51713.1| DNA polymerase III [Lactobacillus iners DSM 13335]
          Length = 605

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 49/265 (18%), Positives = 97/265 (36%), Gaps = 22/265 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPRT E   GQ   C  L+     +  R +     LF GP G GKT+ A++ A+ +    
Sbjct: 33  RPRTFEAVVGQSAICDTLR----NSIKRHKISHAFLFSGPRGTGKTSCAKIFAKAINCMD 88

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P    +  LAA    L   D++ ID      +  +  I +++ Y   + +    +
Sbjct: 89  SKDGEPCNQCSNCLAADKGIL--NDIIEIDAASNNGVDEIRAIRDKVKYAPTQGYYKVYI 146

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT +  +   +  R            + L
Sbjct: 147 IDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRI-SNDQL 205

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              ++       +A  +++   IA  + G  R +  +L ++  + +       T  I   
Sbjct: 206 VARMKFILDQEKIAYDEKSLQVIAQVADGGMRDSLSILDQILSYDQAKINYQDTLAITGY 265

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIAR 273
           A  ++ I+ +  D L+ +    +  
Sbjct: 266 A-DQVKIEALFLDLLNKKTSQALEE 289


>gi|220918864|ref|YP_002494168.1| DNA polymerase III, subunits gamma and tau [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219956718|gb|ACL67102.1| DNA polymerase III, subunits gamma and tau [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 601

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 54/242 (22%), Positives = 86/242 (35%), Gaps = 25/242 (10%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+   E +GQ      L      A    +     LF GP G+GKTT A++VA+ L
Sbjct: 7   ARKYRPQRFGEMSGQEHVVRTLS----NALKTGQLAHAFLFTGPRGVGKTTTARLVAKAL 62

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR--DVLFID-----EIHRLSIIVEEILYPAMED 131
                   GP     G     +   E R  DV+ ID      +  +  IVE + Y    D
Sbjct: 63  NCEK----GPTAEPCGVCTPCVEIAEGRAVDVVEIDAASNNGVDNVRDIVEAVKYRPARD 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                +V E             ++++        + ATT V  +   +  R         
Sbjct: 119 RFKVFVVDEVHMLSQGAFNALLKTLEEPPPHVKFVLATTDVHKVPETILSRCQ-RFDFRR 177

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
             ++ +   + + A   G+ ++  A   +A ++ G  R A  LL +VR     A      
Sbjct: 178 LTLQQIADQLAKVAAEEGMRLSPAALALVARQAEGGMRDALSLLDQVRAACGDAPGDDAV 237

Query: 243 RE 244
            E
Sbjct: 238 AE 239


>gi|10640840|emb|CAC12618.1| probable replication factor C, 40 KD subunit [Thermoplasma
           acidophilum]
          Length = 330

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 60/291 (20%), Positives = 105/291 (36%), Gaps = 42/291 (14%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +      RP++L E  G+ E    LK F+E      + + H+LF G  G GKT+ A  +A
Sbjct: 15  EIWTEKYRPKSLSEIYGEDENIQKLKSFVE-----KKEIPHLLFAGSVGTGKTSTAIALA 69

Query: 76  RE-----LGVNFRSTSGP-------VIAKAGDLAALL-TNLEDRDVLFIDEIHRLSIIVE 122
            E        N    +         +  K  D+A +  +N     +LF+DE  +L+   +
Sbjct: 70  IELFGDSWKENMVEMNASNENGIDVIRNKIKDIARIKPSNPLGFKILFLDEADQLTAEAQ 129

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             L   ME +                   +RF    +      +  P+Q R  + +R   
Sbjct: 130 AALRRTMEIYSET----------------TRFIF--SCNYSSKIIPPIQSR-TVVMRFRP 170

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK--- 239
              E +   +Q  AK  G  + +E+   +   S G  R A  +L+ V    E++  K   
Sbjct: 171 VPDEYISRKLQEIAKNEGFQIDEESMHALVEVSAGDMRKAINVLQAVYTSGEISPKKIYE 230

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
            I     +     ++    G        +  +      G  GI+ + +  S
Sbjct: 231 IIGYASPEKIQKMISRAINGLFDEAREIVDGML--IYDGLSGIDIVRSLHS 279


>gi|312872227|ref|ZP_07732300.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners LEAF
           2062A-h1]
 gi|311092311|gb|EFQ50682.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners LEAF
           2062A-h1]
          Length = 587

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 49/265 (18%), Positives = 97/265 (36%), Gaps = 22/265 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPRT E   GQ   C  L+     +  R +     LF GP G GKT+ A++ A+ +    
Sbjct: 15  RPRTFEAVVGQSAICDTLR----NSIKRHKISHAFLFSGPRGTGKTSCAKIFAKAINCMD 70

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P    +  LAA    L   D++ ID      +  +  I +++ Y   + +    +
Sbjct: 71  SKDGEPCNQCSNCLAADKGIL--NDIIEIDAASNNGVDEIRAIRDKVKYAPTQGYYKVYI 128

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT +  +   +  R            + L
Sbjct: 129 IDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRI-SNDQL 187

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              ++       +A  +++   IA  + G  R +  +L ++  + +       T  I   
Sbjct: 188 VNRMKFILDQEKIAYDEKSLQVIAQVADGGMRDSLSILDQILSYDQAKINYQDTLAITGY 247

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIAR 273
           A  ++ I+ +  D L+ +    +  
Sbjct: 248 A-DQVKIEALFLDLLNKKTSQALEE 271


>gi|206576456|ref|YP_002240028.1| DNA polymerase III, tau subunit [Klebsiella pneumoniae 342]
 gi|206565514|gb|ACI07290.1| DNA polymerase III, tau subunit [Klebsiella pneumoniae 342]
          Length = 635

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 88/249 (35%), Gaps = 25/249 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++   +    + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +A    A   ++  + G+ R A  L     D A  +    +T      
Sbjct: 184 RHQLEHILGEEQIAFEPRALQLLSRAADGSLRDALSL----TDQAIASGEGQLTAASVST 239

Query: 249 ALLRLAIDK 257
            L  L  D+
Sbjct: 240 MLGTLDDDQ 248


>gi|21230460|ref|NP_636377.1| DNA polymerase III subunits gamma and tau [Xanthomonas campestris
           pv. campestris str. ATCC 33913]
 gi|66769546|ref|YP_244308.1| DNA polymerase III subunits gamma and tau [Xanthomonas campestris
           pv. campestris str. 8004]
 gi|21112024|gb|AAM40301.1| DNA polymerase III tau and gamma subunits [Xanthomonas campestris
           pv. campestris str. ATCC 33913]
 gi|66574878|gb|AAY50288.1| DNA polymerase III tau and gamma subunits [Xanthomonas campestris
           pv. campestris str. 8004]
          Length = 653

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/241 (17%), Positives = 74/241 (30%), Gaps = 53/241 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+   E  GQ      L   +++ +         LF G  G+GKTT+A++ A+ L    
Sbjct: 11  RPKRFAELVGQEHVVRALSNALDSGRVHHA----FLFTGTRGVGKTTIARIFAKSLNCET 66

Query: 83  ------------------------RSTSGPVIAKAGDLAALLTNLE------DRDVLFID 112
                                               D+  ++ N +         V  ID
Sbjct: 67  GTSADPCGTCPACLDIDAGRYIDLLEIDAASNTGVDDVREVIENAQYMPSRGKFKVYLID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS      L   +E+                         + ATT    L   +  
Sbjct: 127 EVHMLSKAAFNALLKTLEE------------------PPEHVKFLLATTDPQKLPVTVLS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R  +   L   + + ++  + R      +     A  +++  + G+ R    LL +   +
Sbjct: 169 RC-LQFNLKRLDEDQIQGQMTRILAAEEIESDPSAIVQLSKAADGSLRDGLSLLDQAIAY 227

Query: 233 A 233
           A
Sbjct: 228 A 228


>gi|229823583|ref|ZP_04449652.1| hypothetical protein GCWU000282_00881 [Catonella morbi ATCC 51271]
 gi|229787027|gb|EEP23141.1| hypothetical protein GCWU000282_00881 [Catonella morbi ATCC 51271]
          Length = 655

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 60/303 (19%), Positives = 108/303 (35%), Gaps = 35/303 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP++ +E  GQ      LK  ++      + L H  LF GP G GKT+ A+++A+ +   
Sbjct: 11  RPQSFDELVGQPLIAETLKNAVK-----NQQLSHAYLFTGPRGTGKTSAAKILAKAVNCP 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL-----YPAMEDFQLDL 136
            ++   P      +L   +T  +  DV+ ID      +     L     Y   +      
Sbjct: 66  HQTDGNPCNQC--ELCQAITAGQLSDVIEIDAASNNGVEEIRDLRDKVRYAPSQATYKVY 123

Query: 137 MVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ++ E             ++++   ++   I ATT    +   +  R             D
Sbjct: 124 IIDEVHMLTTGAFNALLKTLEEPPAQVLFILATTEPHKIPATIISRTQ-RFDFGRISQAD 182

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           L   +Q   +  G+    EA   IA  + G  R +  LL +   +   A       E+  
Sbjct: 183 LVGRMQYILEQDGIDFEAEALAVIARAANGGMRDSLSLLDQALSYNRSAVTVQSALEVTG 242

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
           +    + ID          YLT +      GP  +  + A L E + A   + E  +  +
Sbjct: 243 SLSQLVYID----------YLTAL--QAQDGPKALSILQASLQEGKQANRFVEELILFCR 290

Query: 308 GFI 310
             +
Sbjct: 291 DLL 293


>gi|238576141|ref|XP_002387929.1| hypothetical protein MPER_13118 [Moniliophthora perniciosa FA553]
 gi|215448797|gb|EEB88859.1| hypothetical protein MPER_13118 [Moniliophthora perniciosa FA553]
          Length = 360

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 61/185 (32%), Gaps = 38/185 (20%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+T+++ + Q    + L+  + +       L H+LF GPPG GKT+    +AR
Sbjct: 12  PWVETHRPKTIDDVSAQQHTVAVLQKALTS-----TNLPHMLFYGPPGTGKTSTILALAR 66

Query: 77  E------LGVNFRSTSGPVIAKAGDLAALLTNLEDRD-------------------VLFI 111
           +              +         +   + N   +                    ++ +
Sbjct: 67  QLFGPDNFRSRVLELNASDERGISIVREKIKNFARQTPRAKTVSSDGKEYPCPPYKIIIL 126

Query: 112 DEIHRLSIIVEEILYPAMEDFQLD--------LMVGEGPSARSVKINLSRFTLIAATTRV 163
           DE   ++   +  L   ME +            +  +  S     +   RFT +  T+  
Sbjct: 127 DEADSMTQDAQGALRRIMETYARITRFCLVCNYVTRQNHSTSCFAMLQFRFTPLDQTSSF 186

Query: 164 GLLTN 168
             L+ 
Sbjct: 187 NRLSQ 191


>gi|27904904|ref|NP_778030.1| DNA polymerase III subunit gamma [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
 gi|31340040|sp|Q89A95|DPO3X_BUCBP RecName: Full=DNA polymerase III subunit gamma
 gi|27904302|gb|AAO27135.1| DNA polymerase III subunit gamma [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
          Length = 370

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 46/241 (19%), Positives = 74/241 (30%), Gaps = 37/241 (15%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    S     I  +          LF G  G GKTT+A+++A+ L    
Sbjct: 11  RPQTFNDVIGQQYIVS----AISNSLLLGRIHHAWLFFGIRGTGKTTIARILAKSLNCKL 66

Query: 83  RSTSGP------------------------VIAKAGDLAALLTNL------EDRDVLFID 112
             +  P                           K  D+  LL N+          +  ID
Sbjct: 67  GISPNPCRKCSNCVEVEQGNFIDLYEVDAASRTKVEDMKELLDNIRYLPSKGRFKIYLID 126

Query: 113 EIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           E+H LS      L   +E+    +  ++      +     LSR                 
Sbjct: 127 EVHMLSRYSFNFLLKNIEEPPQHIKFILATTNLEKIPDTILSRCLQFQLKPINLNEIVAC 186

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
                    +  YEI+ L  I Q+       A+T         +   T +I  + L  + 
Sbjct: 187 ISNILHKENIT-YEIKALSLISQKSEGSLRDAITLTEQMISMGKGNITEKIVRKTLGMLY 245

Query: 231 D 231
           +
Sbjct: 246 E 246


>gi|242822833|ref|XP_002487968.1| DNA replication factor C subunit Rfc2, putative [Talaromyces
           stipitatus ATCC 10500]
 gi|218712889|gb|EED12314.1| DNA replication factor C subunit Rfc2, putative [Talaromyces
           stipitatus ATCC 10500]
          Length = 393

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 48/270 (17%), Positives = 84/270 (31%), Gaps = 56/270 (20%)

Query: 9   SRNVSQE---DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           S N  ++      +   RP++L++   Q    + L+  ++A+      L H+LF GPPG 
Sbjct: 29  SENAEEQARLQPWVEKYRPKSLDDVAAQDHTTAVLQRTLQAS-----NLPHMLFYGPPGT 83

Query: 66  GKTTLAQVVAR-------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDR------ 106
           GKT+    +++             EL  +       V  K  D A    +          
Sbjct: 84  GKTSTILALSKSLFGPALYRTRILELNASDERGINIVREKIKDFARTQLSHPSGLDAAYK 143

Query: 107 --------DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIA 158
                    ++ +DE   ++   +  L   ME +                   SR T   
Sbjct: 144 AKYPCPPFKIIILDEADSMTQDAQSALRRTMEQY-------------------SRITRFC 184

Query: 159 A-TTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRG 217
                V  +  PL  R     R    +       +   A+  GL + D     +   S G
Sbjct: 185 LVCNYVTRIIEPLASRCS-KFRFKALDGVSAGDRINEIAQAEGLTLDDGVVDTLIRCSEG 243

Query: 218 TPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
             R A   L+           +   ++  D
Sbjct: 244 DLRRAITYLQSAARLVGATSTQKGKKDQED 273


>gi|218289068|ref|ZP_03493305.1| DNA polymerase III, subunits gamma and tau [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218240893|gb|EED08071.1| DNA polymerase III, subunits gamma and tau [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 583

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 48/287 (16%), Positives = 87/287 (30%), Gaps = 61/287 (21%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP+T E+  GQ      L   +++ +         LF GP G GKT+ A+++A+
Sbjct: 5   ALYRAYRPQTFEDLVGQPHVRQTLTNALKSGQLAHAY----LFCGPRGTGKTSTAKLLAK 60

Query: 77  ELGV-------------------------NFRSTSGPVIAKAGDLAALLTN------LED 105
            +                           + +           ++  L  +      +  
Sbjct: 61  AVNCLQPRDGFEPCNACEACMSIQRGSNVDVQEIDAASNRGVDEIRDLRDHVHYLPTMAK 120

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
           + V  +DE+H L+      L   +E+                    +    + ATT    
Sbjct: 121 KKVYIVDEVHMLTPEAFNALLKTLEE------------------PPAHVLFVLATTEPHR 162

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           L   +  R            E +   ++  A+  G+   D A   +A  + G  R A  L
Sbjct: 163 LPATIISRCQ-RFDFRRIAPEAIVERLRLVAQSQGIEAADSALWRLAEAADGGLRDALAL 221

Query: 226 LRRVRDF-------AEVAHAKTITREIADAALLRLAIDKMGFDQLDL 265
             +   F       A VA         +  AL+     +     +D 
Sbjct: 222 FEQAAAFGNGRIDDATVADVVGSVDIGSLVALVGDLAGRSFLSAMDR 268


>gi|20806577|ref|NP_621748.1| DNA polymerase III, gamma/tau subunits [Thermoanaerobacter
           tengcongensis MB4]
 gi|20515019|gb|AAM23352.1| DNA polymerase III, gamma/tau subunits [Thermoanaerobacter
           tengcongensis MB4]
          Length = 518

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 80/229 (34%), Gaps = 21/229 (9%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
              RP++  E  GQ      L+  I+  +         LF G  G GKT++A++ A+ + 
Sbjct: 7   RKYRPKSFSEVVGQDHIVRTLRNQIKMGRIGHAY----LFTGTRGTGKTSVAKIFAKAVN 62

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII-----VEEILYPAMEDFQL 134
                   P  +   ++   +      DVL ID     S+       E ++Y        
Sbjct: 63  CLNPKDGEPCNSC--EVCQAINTGTTMDVLEIDAASNNSVNDVRELRESVIYSPSLTKYK 120

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             ++ E             ++++        I ATT    L + +  R            
Sbjct: 121 VYIIDEVHMLSTGAFNALLKTLEEPPRHVIFILATTEPEKLPDTILSRCQ-RFDFKKIPT 179

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
           + +   ++R  + +G+ +       IA+   G+ R A  LL +   + E
Sbjct: 180 KQIAQNLERICQDSGIQIEQNGIRAIALYGNGSMRDAISLLEQCASYKE 228


>gi|315446392|ref|YP_004079271.1| DNA polymerase III subunit gamma/tau [Mycobacterium sp. Spyr1]
 gi|315264695|gb|ADU01437.1| DNA polymerase III, subunit gamma/tau [Mycobacterium sp. Spyr1]
          Length = 658

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 51/262 (19%), Positives = 89/262 (33%), Gaps = 23/262 (8%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP +  E  GQ      L   + + +         LF GP G GKT+ A+++AR
Sbjct: 2   ALYRKYRPASFAEVVGQEHVTEPLSTALNSGRINHAY----LFSGPRGCGKTSSARILAR 57

Query: 77  ELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PA 128
            L      T+ P  V      LA       + DV  +D      +     L       PA
Sbjct: 58  SLNCEQGPTATPCGVCDSCVALAP--NGPGNMDVTELDAASHGGVDDTRELRDRAFYAPA 115

Query: 129 MEDFQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
              +++ ++         G     + V+        + ATT    +   ++ R       
Sbjct: 116 QSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFVFATTEPEKVLPTIRSR-THHYPF 174

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
                + ++T++++      +AV D     +     G+PR    +L ++   A    + T
Sbjct: 175 RLLAPKTMRTLIEKIVASEQVAVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAHADESGT 234

Query: 241 ITREIADAALLRLAIDKMGFDQ 262
                  A  L  A D    D+
Sbjct: 235 SHVAYQRALSLLGATDVALIDE 256


>gi|255731300|ref|XP_002550574.1| activator 1 41 kDa subunit [Candida tropicalis MYA-3404]
 gi|240131583|gb|EER31142.1| activator 1 41 kDa subunit [Candida tropicalis MYA-3404]
          Length = 354

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/268 (14%), Positives = 79/268 (29%), Gaps = 34/268 (12%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           R+             +   RP++L + + Q      L   I +       L H+LF GPP
Sbjct: 9   RDQAYEEEKLHHTPWVEKYRPKSLSDISSQEHTVKVLTQTITSG-----NLPHMLFYGPP 63

Query: 64  GLGKTTLAQVVARE------LGVNFRSTSGPVIAKAGDLAALLTNLEDRD---------- 107
           G GKT+    +A+               +         +   + N               
Sbjct: 64  GTGKTSTILALAKTLYGPNLYKSRVLELNASDERGISIVREKIKNFARLTISNPSKEDLE 123

Query: 108 --------VLFIDEIHRLSIIVEEILYPAMED--FQLDLMVGEGPSARSVKINLSRFTLI 157
                   ++ +DE   ++   +  L   ME        ++      R +    SR +  
Sbjct: 124 KYPCPPYKIIILDEADSMTNDAQSALRRTMETYAGITRFVLICNYITRIIDPLTSRCSKF 183

Query: 158 AATTRVGLLTNPLQDRFGIPIRLNFYE-IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSR 216
                +      L+ RF        Y   + L  +++  A      +T   +      + 
Sbjct: 184 RFK-LLNNENALLRLRFIANEENLRYTGDDVLNEVLKISAGDLRKGITYLQSAAKLSSTF 242

Query: 217 GTPRIAGRL-LRRVRDFAEVAHAKTITR 243
                 G + ++ +R+ A + H   +  
Sbjct: 243 DDNDDKGIITVKTIRETAGILHDDVLNE 270


>gi|195051153|ref|XP_001993043.1| GH13305 [Drosophila grimshawi]
 gi|193900102|gb|EDV98968.1| GH13305 [Drosophila grimshawi]
          Length = 332

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/238 (16%), Positives = 71/238 (29%), Gaps = 38/238 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP  L++     E  S +  FI       + L H+LF GPPG GKT+     AR
Sbjct: 12  PWVEKYRPNCLDDLISHEEIISTITRFI-----NQKQLPHLLFYGPPGTGKTSTILACAR 66

Query: 77  ------ELGVNFRSTSGPVIAKAGDLA-ALLTNLEDRDVLF-------IDEIHRLSIIVE 122
                          +       G +   +L     R +         +DE   ++   +
Sbjct: 67  QLYSSAHFKSMVLELNASDDRGIGIVRGQILNFASTRTIFCGTFKLIILDEADAMTNDAQ 126

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             L   +E +                              +  +   LQ R     R   
Sbjct: 127 NALRRIIEKYT------------------ENVRFCIICNYLSKIIPALQSRC-TRFRFAP 167

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
              E +   + +  +   + VTD+    +   S+G  R    +L+      ++ +   
Sbjct: 168 LSAEQMLPRLNQIVQEEHVNVTDDGKNALLTLSKGDMRKVLNVLQSTSMAFDIVNEDN 225


>gi|297582360|ref|YP_003698140.1| DNA polymerase III subunits gamma and tau [Bacillus
           selenitireducens MLS10]
 gi|297140817|gb|ADH97574.1| DNA polymerase III, subunits gamma and tau [Bacillus
           selenitireducens MLS10]
          Length = 600

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 59/291 (20%), Positives = 95/291 (32%), Gaps = 61/291 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+ L++  GQ      L+  +       + L H  LF GP G GKT+ A+++A+ +   
Sbjct: 11  RPQVLKDVVGQEHITRTLRNAL-----LQQKLSHAYLFSGPRGTGKTSAAKIIAKAVNCE 65

Query: 82  ------------------------FRSTSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                                ++  +   ++         V  I
Sbjct: 66  QAPVEEPCNTCSTCTGIQDGSIVDVIEIDAASNNGVDEIRDIRDKVKFAPSGASYKVYII 125

Query: 112 DEIHRLSIIVEEILYPAMED--FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+H L+      L   +E+    +  ++      +     +SR                
Sbjct: 126 DEVHMLTTGAFNALLKTLEEPPRHVIFILATTEPHKIPLTIISRCQ-------------- 171

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
              RF          I+ ++ I++ G     LAV  +A   IA  S G  R A  LL + 
Sbjct: 172 ---RFDFKRITAHTMIKRMEEIIEDG----DLAVDPDALSMIARASEGGMRDALSLLDQA 224

Query: 230 RDFAEVAHAKTITREIADAALLRLAIDKMG--FDQLDLRYLTMIARNFGGG 278
             +A+ +        I  AA   L  D M    DQ     LT I R    G
Sbjct: 225 ISYADTSVTLDDVLSIIGAASQDLMYDVMEALLDQQVADGLTAIDRLMSDG 275


>gi|156938087|ref|YP_001435883.1| replication factor C large subunit [Ignicoccus hospitalis KIN4/I]
 gi|166977383|sp|A8AC24|RFCL_IGNH4 RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|156567071|gb|ABU82476.1| replication factor C large subunit [Ignicoccus hospitalis KIN4/I]
          Length = 476

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 78/226 (34%), Gaps = 20/226 (8%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
             I   RP+ +E+   Q +A   L  +I+   +         L  GPPG+GKT+L + + 
Sbjct: 5   PWIIKYRPKRVEDVIDQEKAKEVLIPWIKKWLSGTPPEKRAALLWGPPGVGKTSLVEAIC 64

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRD--------VLFIDEIHRLSIIVEEILYP 127
            E  +     +     + GD+  +      +         ++ +DE+  LS   +E    
Sbjct: 65  NEFNLEKIEMNASDFRRKGDIERVAIAAATKKPLPPWKGRLILLDEVDGLSPRGDEG--- 121

Query: 128 AMEDFQLDLMVGEGPSARSVKIN----LSRFTLIAATTRVGLLTNPLQDRFGIPIRLN-- 181
           A+      +   + P   +        L      +       +       F + I     
Sbjct: 122 AVAAILELIKKTKNPIVMTANDPWGTHLRPIREESLLVEFKRIPKTKAREFLLKICEKEG 181

Query: 182 -FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
            + E E +  I+++       ++ D  +   A   + T  +A  LL
Sbjct: 182 VYCEKEAVDYIIEKNKGDLRASINDLQSIAEA-YGKVTLDLASALL 226


>gi|113955220|ref|YP_729300.1| DNA polymerase III subunits gamma and tau [Synechococcus sp.
           CC9311]
 gi|113882571|gb|ABI47529.1| DNA polymerase III, subunits gamma and tau [Synechococcus sp.
           CC9311]
          Length = 643

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 83/221 (37%), Gaps = 19/221 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  ++  GQ    + L   + + +         LF GP G GKT+ A+++AR L    
Sbjct: 13  RPQRFDQLVGQEAIAATLGHALTSGRIA----PAYLFSGPRGTGKTSSARILARSLNCLS 68

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P      +L   +      DV+ ID      +  +  ++E   +  ++      +
Sbjct: 69  HDGPTPQPCGTCELCNTIARGTALDVIEIDAASNTGVDNIRDLIERSRFAPVQARWKVYV 128

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           V E             ++++    +   + ATT    +   +  R           +E L
Sbjct: 129 VDECHMLSTAAFNALLKTLEEPPPQVVFVLATTDPQRVLPTILSRCQ-RFDFRRIPLEAL 187

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
            + +   A+   + +  EA   +A R++G  R A  LL ++
Sbjct: 188 NSHLAWIAEQESIPIQPEALHVVAQRAQGGLRDAESLLDQL 228


>gi|116629039|ref|YP_814211.1| DNA polymerase III, gamma/tau subunit [Lactobacillus gasseri ATCC
           33323]
 gi|116094621|gb|ABJ59773.1| DNA polymerase III, gamma/tau subunit [Lactobacillus gasseri ATCC
           33323]
          Length = 602

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 80/228 (35%), Gaps = 21/228 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPRT +   GQ      LK  I     R +     LF GP G GKT+ A++ A+ L    
Sbjct: 11  RPRTFDGVVGQTAITDTLKNAI----KRGKISHAFLFAGPRGTGKTSCAKIFAKALNCTN 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P       LAA    +   D++ ID      +  +  I +++ Y   +      +
Sbjct: 67  LQDGEPCNECENCLAADKGTM--NDIIEIDAASNNGVDEIRDIRDKVKYAPTQGKYKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT +  +   +  R          + + +
Sbjct: 125 IDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRIDQHDLI 184

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
              +        +   ++A   IA  + G  R +  +L ++  + +  
Sbjct: 185 AR-MTYILGQEKIDFEEKALEVIAQVADGGMRDSLSILDQILSYDQDK 231


>gi|288936781|ref|YP_003440840.1| DNA polymerase III subunits gamma/tau [Klebsiella variicola At-22]
 gi|288891490|gb|ADC59808.1| DNA polymerase III, subunits gamma and tau [Klebsiella variicola
           At-22]
          Length = 635

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 88/249 (35%), Gaps = 25/249 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++   +    + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +A    A   ++  + G+ R A  L     D A  +    +T      
Sbjct: 184 RHQLEHILGEEQIAFEPRALQLLSRAADGSLRDALSL----TDQAIASGEGQLTAASVST 239

Query: 249 ALLRLAIDK 257
            L  L  D+
Sbjct: 240 MLGTLDDDQ 248


>gi|226294707|gb|EEH50127.1| replication factor C subunit 4 [Paracoccidioides brasiliensis Pb18]
          Length = 352

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/238 (18%), Positives = 80/238 (33%), Gaps = 38/238 (15%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           +E L       E   +   RP  L++  G  E    LK+      AR   + HV+  G P
Sbjct: 16  QENLAGAPPDYELPWVEKYRPVYLDDIVGNTETIERLKII-----ARDGNMPHVIISGMP 70

Query: 64  GLGKTTLAQVVAREL-----GVNFRSTSGPVIAKAGDLAALLTNLEDRDV---------L 109
           G+GKTT    +AR++            +         +   +     + V         +
Sbjct: 71  GIGKTTSILCLARQMLGDSYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRHKLV 130

Query: 110 FIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
            +DE   ++   ++ L   ME +                   +RF    A  +   +  P
Sbjct: 131 ILDEADSMTSGAQQALRRTMEIYSTT----------------TRFAF--ACNQSNKIIEP 172

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
           LQ R  I       + + LK + Q   +   +  +++    +   + G  R A   L+
Sbjct: 173 LQSRCAILRYARLTDAQILKRLTQ-ICQAENVKHSEDGIAALIFSAEGDMRQAINNLQ 229


>gi|197124085|ref|YP_002136036.1| DNA polymerase III subunits gamma/tau [Anaeromyxobacter sp. K]
 gi|196173934|gb|ACG74907.1| DNA polymerase III, subunits gamma and tau [Anaeromyxobacter sp. K]
          Length = 601

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 54/242 (22%), Positives = 86/242 (35%), Gaps = 25/242 (10%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+   E +GQ      L      A    +     LF GP G+GKTT A++VA+ L
Sbjct: 7   ARKYRPQRFGEMSGQEHVVRTLS----NALKTGQLAHAFLFTGPRGVGKTTTARLVAKAL 62

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR--DVLFID-----EIHRLSIIVEEILYPAMED 131
                   GP     G     +   E R  DV+ ID      +  +  IVE + Y    D
Sbjct: 63  NCEK----GPTAEPCGVCTPCVEIAEGRAVDVVEIDAASNNGVDNVRDIVEAVKYRPARD 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                +V E             ++++        + ATT V  +   +  R         
Sbjct: 119 RFKVFVVDEVHMLSQGAFNALLKTLEEPPPHVKFVLATTDVHKVPETILSRCQ-RFDFRR 177

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
             ++ +   + + A   G+ ++  A   +A ++ G  R A  LL +VR     A      
Sbjct: 178 LTLQQIADQLAKVAAEEGMRLSPAALALVARQAEGGMRDALSLLDQVRAACGDAPGDDAV 237

Query: 243 RE 244
            E
Sbjct: 238 AE 239


>gi|153808560|ref|ZP_01961228.1| hypothetical protein BACCAC_02855 [Bacteroides caccae ATCC 43185]
 gi|149128882|gb|EDM20099.1| hypothetical protein BACCAC_02855 [Bacteroides caccae ATCC 43185]
          Length = 618

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 75/245 (30%), Gaps = 54/245 (22%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T E   GQ    + LK  I   K         LF GP G+GKTT A++ A+ +
Sbjct: 8   ARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAY----LFCGPRGVGKTTCARIFAKTI 63

Query: 79  GV-------------------------NFRSTSGPVIAKAGDLAALLT------NLEDRD 107
                                      N             D+  L+        +    
Sbjct: 64  NCMTPTADGEACNQCESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYK 123

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           V  IDE+H LS          +E+                         I ATT    + 
Sbjct: 124 VYIIDEVHMLSASAFNAFLKTLEE------------------PPRHAIFILATTEKHKIL 165

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             +  R  I    N   +ED    +   A   G++   EA   IAM++ G  R A  +  
Sbjct: 166 PTILSRCQI-YDFNRISVEDTVNHLSYVASKEGISAEPEALNVIAMKADGGMRDALSIFD 224

Query: 228 RVRDF 232
           +V  F
Sbjct: 225 QVVSF 229


>gi|126437840|ref|YP_001073531.1| DNA polymerase III subunits gamma and tau [Mycobacterium sp. JLS]
 gi|126237640|gb|ABO01041.1| DNA polymerase III, tau subunit [Mycobacterium sp. JLS]
          Length = 618

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 46/236 (19%), Positives = 80/236 (33%), Gaps = 27/236 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T  E  GQ      L   + A +         LF GP G GKT+ A+++AR
Sbjct: 2   ALYRKYRPATFAEVVGQEHVTEPLSTALSAGRINHAY----LFSGPRGCGKTSSARILAR 57

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR----DVLFIDEIHRLSIIVEEILY------ 126
            L        GP     G   + +    +     DV  +D      +     L       
Sbjct: 58  SLNCE----QGPTPTPCGTCDSCVALAPNGPGNMDVTELDAASHGGVDDTRELRDRAFYA 113

Query: 127 PAMEDFQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
           PA   +++ ++         G     + V+        + ATT    +   ++ R     
Sbjct: 114 PAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFVFATTEPEKVLPTIRSR-THHY 172

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
                  + ++T+++R     G+ V D     +     G+PR    +L ++   A 
Sbjct: 173 PFRLLAPKTMRTLLERICADEGVTVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAA 228


>gi|254973666|ref|ZP_05270138.1| DNA polymerase III subunits gamma and tau [Clostridium difficile
           QCD-66c26]
 gi|255091057|ref|ZP_05320535.1| DNA polymerase III subunits gamma and tau [Clostridium difficile
           CIP 107932]
 gi|255312711|ref|ZP_05354294.1| DNA polymerase III subunits gamma and tau [Clostridium difficile
           QCD-76w55]
 gi|255515471|ref|ZP_05383147.1| DNA polymerase III subunits gamma and tau [Clostridium difficile
           QCD-97b34]
 gi|255648563|ref|ZP_05395465.1| DNA polymerase III subunits gamma and tau [Clostridium difficile
           QCD-37x79]
 gi|260681785|ref|YP_003213070.1| DNA polymerase III subunits gamma and tau [Clostridium difficile
           CD196]
 gi|260685382|ref|YP_003216515.1| DNA polymerase III subunits gamma and tau [Clostridium difficile
           R20291]
 gi|306518692|ref|ZP_07405039.1| DNA polymerase III subunits gamma and tau [Clostridium difficile
           QCD-32g58]
 gi|260207948|emb|CBA60069.1| DNA polymerase III subunit gamma/tau [Clostridium difficile CD196]
 gi|260211398|emb|CBE01472.1| DNA polymerase III subunit gamma/tau [Clostridium difficile R20291]
          Length = 545

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 48/237 (20%), Positives = 86/237 (36%), Gaps = 27/237 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     RP+  E+  GQ      LK  I      ++ + H  LF G  G GKT+ A++ +
Sbjct: 4   ALYRAYRPQKFEDVIGQDHIIKTLKNQI-----YSDNIGHAYLFCGTRGTGKTSTAKIFS 58

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHRLSII-----VEEILYPA 128
           R +    +    P      +     + L+D    V+ ID     S+       E + Y  
Sbjct: 59  RAVNCLNKINEEP----CNECEICESVLKDNTMDVVEIDAASNNSVDDIRELRESVKYSP 114

Query: 129 MEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
                   ++ E             ++++   S    I ATT    +   +  R      
Sbjct: 115 ANAKYKVYIIDEVHMLSQGAFNALLKTLEEPPSYVIFILATTEPHKIPATILSRCQRYDF 174

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
                ++D+   +++  +  G+ + D+A   IA  S+G  R A  +L +   F E  
Sbjct: 175 KRV-TVKDMTLRMKKICEDEGIDIDDKALNLIARNSQGALRDALSILDQCMSFGESK 230


>gi|145221873|ref|YP_001132551.1| DNA polymerase III subunits gamma and tau [Mycobacterium gilvum
           PYR-GCK]
 gi|145214359|gb|ABP43763.1| DNA polymerase III, tau subunit [Mycobacterium gilvum PYR-GCK]
          Length = 652

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 51/262 (19%), Positives = 89/262 (33%), Gaps = 23/262 (8%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP +  E  GQ      L   + + +         LF GP G GKT+ A+++AR
Sbjct: 2   ALYRKYRPASFAEVVGQEHVTEPLSTALNSGRINHAY----LFSGPRGCGKTSSARILAR 57

Query: 77  ELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PA 128
            L      T+ P  V      LA       + DV  +D      +     L       PA
Sbjct: 58  SLNCEQGPTATPCGVCDSCVALAP--NGPGNMDVTELDAASHGGVDDTRELRDRAFYAPA 115

Query: 129 MEDFQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
              +++ ++         G     + V+        + ATT    +   ++ R       
Sbjct: 116 QSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFVFATTEPEKVLPTIRSR-THHYPF 174

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
                + ++T++++      +AV D     +     G+PR    +L ++   A    + T
Sbjct: 175 RLLAPKTMRTLIEKIVASEQVAVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAHADESGT 234

Query: 241 ITREIADAALLRLAIDKMGFDQ 262
                  A  L  A D    D+
Sbjct: 235 SHVAYQRALSLLGATDVALIDE 256


>gi|256828009|ref|YP_003156737.1| DNA polymerase III subunits gamma and tau [Desulfomicrobium
           baculatum DSM 4028]
 gi|256577185|gb|ACU88321.1| DNA polymerase III, subunits gamma and tau [Desulfomicrobium
           baculatum DSM 4028]
          Length = 614

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 83/230 (36%), Gaps = 21/230 (9%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
            +++  +  RP++  E  GQ       ++   AA +        LF G  G+GKTTLA++
Sbjct: 2   SQESLTARYRPQSFAEVAGQDAVK---RILSRAA-STGRVAPAYLFSGTRGVGKTTLARI 57

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPA 128
            A+ L       S P       +   +T     DV+ ID      +  +  + E++ Y  
Sbjct: 58  FAKALNCQNGPASEPCNQCP--ICRQITLGSAVDVVEIDGASNTGVDNVRRLKEDVGYAP 115

Query: 129 MEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +E     +++ E             ++++      T I ATT        +  R    + 
Sbjct: 116 LECRYKVIIIDEAHMLSKQAFNALLKTLEEPPGHVTFIMATTEPEKFPQTIISRCQHFVF 175

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
               + E L   +    K         A   +A R  G+ R    LL +V
Sbjct: 176 KRLPQAE-LVRHLDGVLKRESFPAEPSAVTLVARRGAGSVRDGMSLLGQV 224


>gi|332828295|gb|EGK01007.1| hypothetical protein HMPREF9455_02796 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 582

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 76/245 (31%), Gaps = 54/245 (22%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T     GQ    + LK  I + K         LF GP G+GKTT A++ A+ +
Sbjct: 8   ARKYRPMTFNSVVGQRALTTTLKNAIASGKLAHAY----LFCGPRGVGKTTCARIFAKTI 63

Query: 79  GV-------------------------NFRSTSGPVIAKAGDLAALLT------NLEDRD 107
                                      N             D+ +L+        +    
Sbjct: 64  NCLSPAADGEACNQCESCVAFNEQRSFNIHELDAASNNSVDDIRSLIEQVRIPPQIGKYK 123

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           V  IDE+H LS          +E+          P   ++ I         ATT    + 
Sbjct: 124 VYIIDEVHMLSQAAFNAFLKTLEE----------PPHHAIFIL--------ATTEKHKIL 165

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             +  R  I        I+D    +Q  A    +    EA   +A ++ G  R A  +  
Sbjct: 166 PTILSRCQIYDFSRI-TIKDTVEHLQYVASQENVQTEPEALNVLAQKADGGMRDALSIFD 224

Query: 228 RVRDF 232
           +V  F
Sbjct: 225 QVVSF 229


>gi|292669040|ref|ZP_06602466.1| DNA polymerase III, gamma/tau subunit DnaX [Selenomonas noxia ATCC
           43541]
 gi|292649295|gb|EFF67267.1| DNA polymerase III, gamma/tau subunit DnaX [Selenomonas noxia ATCC
           43541]
          Length = 644

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 49/247 (19%), Positives = 91/247 (36%), Gaps = 25/247 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP +  +  GQ      L   +    A  +     LF GP G GKT+ A+++AR L    
Sbjct: 44  RPESFADLVGQEHISRTLSRAV----ASGQTSHAYLFTGPRGTGKTSTAKILARALNCAE 99

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
             T  P      +    +++    DV  ID      I  +  + E + +          +
Sbjct: 100 GPTLTP--CGVCESCRSISDGSSMDVFEIDAASNRGIDEIRDLRESVKFAPTAGRYKIYI 157

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++    R   I ATT    +   +Q R       +   + ++
Sbjct: 158 IDEVHMLTTEAFNALLKTLEEPPERVIFILATTEPHKVPATIQSRCQ-RYDFHRITVTEI 216

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  +    + +G+A  ++A   IA+++ G  R A  +L +    AE      +T E    
Sbjct: 217 RDRLLYVCRESGIAAEEDALGLIALQADGGMRDALSILDQCTALAE----GQLTTERVQE 272

Query: 249 ALLRLAI 255
           AL  +  
Sbjct: 273 ALGLVGH 279


>gi|167042652|gb|ABZ07373.1| putative ATPase family associated with various cellular activities
           (AAA) [uncultured marine crenarchaeote HF4000_ANIW133M9]
 gi|167043915|gb|ABZ08603.1| putative ATPase family associated with various cellular activities
           (AAA) [uncultured marine crenarchaeote HF4000_APKG3H9]
 gi|167044610|gb|ABZ09283.1| putative ATPase family associated with various cellular activities
           (AAA) [uncultured marine crenarchaeote HF4000_APKG7F11]
          Length = 318

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 40/258 (15%), Positives = 79/258 (30%), Gaps = 37/258 (14%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA-----Q 72
            +   RP+ + E   Q E   +    I +       L H+LF G  G+GKT+ A     +
Sbjct: 8   WVEKYRPQKISELINQKEIVGS----INSMLKNQSELPHLLFSGSAGVGKTSAALCVSRE 63

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLED---------RDVLFIDEIHRLSIIVEE 123
           ++ +         +         +   +                ++ +DE   ++   + 
Sbjct: 64  ILGKHWRDYTLELNASDERGINMVRERVKKFSRFAGLDTEIPFKIIILDEADEMTADAQT 123

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
            L    ED                   + RF LIA    +  +  P+Q R  +       
Sbjct: 124 ALRRITED----------------TAKICRFILIA--NNLSKIIKPIQSRCVVFKFTKIS 165

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           + E L   ++   K   +   ++    I   + G  R A  +L+       V  +   + 
Sbjct: 166 DKEILSQ-LKSIGKKEKIKADEKGLSAICDYTDGDLRHAINILQAAASSGNVTESVVKSV 224

Query: 244 EIADAALLRLAIDKMGFD 261
                      + K+  D
Sbjct: 225 VGLTKTNDVQDVLKLALD 242


>gi|42518518|ref|NP_964448.1| DNA polymerase III subunit gamma/tau [Lactobacillus johnsonii NCC
           533]
 gi|41582803|gb|AAS08414.1| DNA polymerase III subunit gamma/tau [Lactobacillus johnsonii NCC
           533]
          Length = 602

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 80/228 (35%), Gaps = 21/228 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPRT +   GQ      LK  I     R +     LF GP G GKT+ A++ A+ L    
Sbjct: 11  RPRTFDGVVGQTAITDTLKNAI----KRGKISHAFLFAGPRGTGKTSCAKIFAKALNCTN 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P       LAA    +   D++ ID      +  +  I +++ Y   +      +
Sbjct: 67  LQDGEPCNECENCLAADQGTM--NDIIEIDAASNNGVDEIRDIRDKVKYAPTQGKYKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT +  +   +  R          + + +
Sbjct: 125 IDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRIDQHDLI 184

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
              +        +   ++A   IA  + G  R +  +L ++  + +  
Sbjct: 185 AR-MTYILGQEKIDFEEKALEVIAQVADGGMRDSLSILDQILSYDQDK 231


>gi|311087868|gb|ADP67947.1| DNA polymerase III subunits gamma and tau [Buchnera aphidicola str.
           JF98 (Acyrthosiphon pisum)]
          Length = 368

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 77/219 (35%), Gaps = 21/219 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+   +  GQ    +     I    +        L  G  G+GKTT+A+++A+ L    
Sbjct: 18  RPQYFRDIIGQKHIVT----AISNGLSLGRIHHAWLLSGTRGIGKTTIARLLAKSLNCQN 73

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA-----MEDFQLDLM 137
             TS P   +      +   L   DV+ ID   R  +     +  +     ++      +
Sbjct: 74  GITSDP-CRQCIICKEIEKGL-CLDVIEIDGASRTKVEEMREILDSIYYSPIKSRFKVYL 131

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        + ATT V  +   +  R  +  +L     E +
Sbjct: 132 IDEVHMLSRHSFNALLKTLEEPPEHVKFVLATTDVDRIPKTIISRC-LYFKLQIISEEKI 190

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
              ++       +   + +  +IA  + G+ R A  LL 
Sbjct: 191 FEFLKYILIKESIDTDEYSLKKIAYHAHGSIRDALNLLE 229


>gi|187918326|ref|YP_001883889.1| DNA polymerase III subunits gamma and tau [Borrelia hermsii DAH]
 gi|119861174|gb|AAX16969.1| DNA polymerase III subunit gamma/tau [Borrelia hermsii DAH]
          Length = 550

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 85/227 (37%), Gaps = 25/227 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPR      GQ      LK  IE  +         +F GP G+GKT+ A+  AR L    
Sbjct: 12  RPRDFNSLEGQDFVVETLKHSIENNRIANAY----IFSGPRGVGKTSSARAFARCLNCQA 67

Query: 83  RSTSGPVIAKAGDLAAL--LTNLEDRDVLFIDEIHRLSII-----VEEILYPAMEDFQLD 135
               GP I   G   +   + N    D++ ID     S+       EEI++P        
Sbjct: 68  ----GPTIMPCGVCFSCKSIDNDNSLDIIEIDGASNTSVQDVRQIKEEIMFPPASSKYRV 123

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             ++++   S    I ATT V  L + ++ R           +E
Sbjct: 124 YIIDEVHMLSNSAFNALLKTIEEPPSYIVFIFATTEVHKLPDTIKSRCQ-HFNFRLLPLE 182

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
            +  +++       +   DEA   IA +S G+ R A  L  ++   +
Sbjct: 183 KIYEMLKHVCLEDNIKYEDEALRWIAYKSGGSVRDAYTLFDQIVSLS 229


>gi|15617079|ref|NP_240292.1| DNA polymerase III subunits gamma and tau [Buchnera aphidicola str.
           APS (Acyrthosiphon pisum)]
 gi|219681831|ref|YP_002468217.1| DNA polymerase III subunits gamma and tau [Buchnera aphidicola str.
           5A (Acyrthosiphon pisum)]
 gi|219682386|ref|YP_002468770.1| DNA polymerase III subunits gamma and tau [Buchnera aphidicola str.
           Tuc7 (Acyrthosiphon pisum)]
 gi|257471534|ref|ZP_05635533.1| DNA polymerase III subunits gamma and tau [Buchnera aphidicola str.
           LSR1 (Acyrthosiphon pisum)]
 gi|14194666|sp|P57553|DPO3X_BUCAI RecName: Full=DNA polymerase III subunit gamma
 gi|25403641|pir||B84986 DNA-directed DNA polymerase (EC 2.7.7.7) [imported] - Buchnera sp.
           (strain APS)
 gi|10039144|dbj|BAB13178.1| DNA polymerase III subunits gamma and tau [Buchnera aphidicola str.
           APS (Acyrthosiphon pisum)]
 gi|219622119|gb|ACL30275.1| DNA polymerase III subunits gamma and tau [Buchnera aphidicola str.
           Tuc7 (Acyrthosiphon pisum)]
 gi|219624674|gb|ACL30829.1| DNA polymerase III subunits gamma and tau [Buchnera aphidicola str.
           5A (Acyrthosiphon pisum)]
 gi|311086205|gb|ADP66287.1| DNA polymerase III subunits gamma and tau [Buchnera aphidicola str.
           LL01 (Acyrthosiphon pisum)]
 gi|311086783|gb|ADP66864.1| DNA polymerase III subunits gamma and tau [Buchnera aphidicola str.
           TLW03 (Acyrthosiphon pisum)]
 gi|311087371|gb|ADP67451.1| DNA polymerase III subunits gamma and tau [Buchnera aphidicola str.
           JF99 (Acyrthosiphon pisum)]
          Length = 361

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 77/219 (35%), Gaps = 21/219 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+   +  GQ    +     I    +        L  G  G+GKTT+A+++A+ L    
Sbjct: 11  RPQYFRDIIGQKHIVT----AISNGLSLGRIHHAWLLSGTRGIGKTTIARLLAKSLNCQN 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA-----MEDFQLDLM 137
             TS P   +      +   L   DV+ ID   R  +     +  +     ++      +
Sbjct: 67  GITSDP-CRQCIICKEIEKGL-CLDVIEIDGASRTKVEEMREILDSIYYSPIKSRFKVYL 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        + ATT V  +   +  R  +  +L     E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFVLATTDVDRIPKTIISRC-LYFKLQIISEEKI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
              ++       +   + +  +IA  + G+ R A  LL 
Sbjct: 184 FKFLKYILIKESIDTDEYSLKKIAYHAHGSIRDALNLLE 222


>gi|3377851|gb|AAC28233.1| contains similarity to ATPases associated with various cellular
           activities (Pfam: AAA.hmm, score: 155.05) [Arabidopsis
           thaliana]
 gi|7267174|emb|CAB77886.1| putative vesicle transfer ATPase [Arabidopsis thaliana]
          Length = 536

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 50/204 (24%), Positives = 85/204 (41%), Gaps = 21/204 (10%)

Query: 47  AKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALL---- 100
           +K  +     VLF GPPG GKT+ A+V+A + G+         +     G+   LL    
Sbjct: 281 SKFESNRPRAVLFEGPPGTGKTSCARVIANQAGIPLLYVPLEAVMSKYYGESERLLGAVF 340

Query: 101 ---TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLI 157
                L D  ++F+DEI   +I  +  ++ A     L +++ +            +  +I
Sbjct: 341 SQANELPDGAIIFLDEIDAFAISRDSEMHEAT-RRVLSVLLRQIDGFE----QEKKVVVI 395

Query: 158 AATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRG 217
           AAT R   L   L  RF   I  +  +++  + I+ + AK            E+   ++ 
Sbjct: 396 AATNRKQDLDPALISRFDSMIMFDLPDLQTRQEIIAQYAKQLSKP-------ELVQLAQA 448

Query: 218 TPRIAGRLLRRVRDFAEVAHAKTI 241
           T  ++GR +R V   AE   A  I
Sbjct: 449 TEAMSGRDIRDVCQGAERTWASKI 472


>gi|332671910|ref|YP_004454918.1| DNA polymerase III subunits gamma and tau [Cellulomonas fimi ATCC
           484]
 gi|332340948|gb|AEE47531.1| DNA polymerase III, subunits gamma and tau [Cellulomonas fimi ATCC
           484]
          Length = 901

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 61/175 (34%), Gaps = 22/175 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP +  E  GQ    + L+  + + +         LF GP G GKTT A+++AR
Sbjct: 4   ALYRRYRPESFAEVIGQDHVTAPLRQALRSGQVNHAY----LFSGPRGCGKTTSARILAR 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR----DVLFIDEIHRLSIIVEEILY------ 126
            L     +   P     G   + +          DV+ ID      +     L       
Sbjct: 60  ILNCEQNTEGSPTDTPCGTCPSCVELARGGSGSLDVVEIDAASHGGVDDARELRERATFA 119

Query: 127 PAMEDFQLDLMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           PA + +++ ++         G     + V+        I ATT    +   ++ R
Sbjct: 120 PARDRYKVFILDEAHMVTPQGFNALLKIVEEPPPHVKFIFATTEPDKVIGTIRSR 174


>gi|294893510|ref|XP_002774508.1| replication factor C subunit, putative [Perkinsus marinus ATCC
           50983]
 gi|239879901|gb|EER06324.1| replication factor C subunit, putative [Perkinsus marinus ATCC
           50983]
          Length = 514

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 52/299 (17%), Positives = 104/299 (34%), Gaps = 42/299 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP +L +  G   A   L+     A A    + ++L  GPPG GKTT    +AR
Sbjct: 16  PWVEKYRPISLSDVVGNEPAMQRLR-----AMAEDRHMPNLLLSGPPGCGKTTSVMCLAR 70

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI--IVEEILYPAMEDFQL 134
            L       +  +   A D               ID +         ++I  PA    Q 
Sbjct: 71  ALLGEDLVKTAVLELNASDDRG------------IDVVRNRIKTFAQQKISLPAGGCQQK 118

Query: 135 DLMVGEG---------PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
            +++ E             R+++I+ +      A  +   +  P+Q R  I       + 
Sbjct: 119 IVILDEADSMTEAAQQAMRRTMEIHSATTRFALACNQSTKIIEPIQSRCAIVRFSRLKDS 178

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           + ++  V++ A + G+ +  +    +   + G  R A   L+     +       +TRE 
Sbjct: 179 D-IEAQVKKVADMEGVQLRGDGLEALIFTAEGDMRAALNNLQ-----STATGFGVVTREN 232

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISA---GLSEPRDAIEDLIE 301
                 +    ++    LD      +  ++      ++ I+A    + +    +E +I 
Sbjct: 233 VFKVCDQPQPGELKQATLD-----CVNNDWCSAFDRLDKITAQGYSIGDIVGTLERVIR 286


>gi|225374828|ref|ZP_03752049.1| hypothetical protein ROSEINA2194_00449 [Roseburia inulinivorans DSM
           16841]
 gi|225213397|gb|EEG95751.1| hypothetical protein ROSEINA2194_00449 [Roseburia inulinivorans DSM
           16841]
          Length = 523

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 81/230 (35%), Gaps = 21/230 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP+  E+  GQ    + LK  I+A +         LF G  G GKTT+A++ A+
Sbjct: 5   ALYRKFRPQEFEDVKGQDHIVTTLKNQIKADRIGHAY----LFCGTRGTGKTTIAKIFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +         P   +     A+        V+ ID      +  +  I EE+ Y   E 
Sbjct: 61  AVNCEHPVDGSP-CGECPTCKAIAAGSSMN-VIEIDAASNNGVDNIRQIREEVEYRPTEG 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++   S    I ATT    +   +  R         
Sbjct: 119 KYKVYIIDEVHMLSIGAFNALLKTLEEPPSYVIFILATTEAHKIPITILSRCQ-RYDFRR 177

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
             I+ +   +    +   + V + A   IA  + G+ R A  LL +   F
Sbjct: 178 ISIDTIAGRLTYLMEKEQVNVEERAIRYIAKAADGSMRDALSLLDQCIAF 227


>gi|126697582|ref|YP_001086479.1| DNA polymerase III subunits gamma and tau [Clostridium difficile
           630]
 gi|255099173|ref|ZP_05328150.1| DNA polymerase III subunits gamma and tau [Clostridium difficile
           QCD-63q42]
 gi|255654098|ref|ZP_05399507.1| DNA polymerase III subunits gamma and tau [Clostridium difficile
           QCD-23m63]
 gi|296452477|ref|ZP_06894176.1| DNA polymerase III subunits gamma and tau [Clostridium difficile
           NAP08]
 gi|296878245|ref|ZP_06902255.1| DNA polymerase III subunits gamma and tau [Clostridium difficile
           NAP07]
 gi|115249019|emb|CAJ66830.1| DNA polymerase III subunits gamma and tau [Clostridium difficile]
 gi|296258683|gb|EFH05579.1| DNA polymerase III subunits gamma and tau [Clostridium difficile
           NAP08]
 gi|296430753|gb|EFH16590.1| DNA polymerase III subunits gamma and tau [Clostridium difficile
           NAP07]
          Length = 545

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 48/237 (20%), Positives = 86/237 (36%), Gaps = 27/237 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     RP+  E+  GQ      LK  I      ++ + H  LF G  G GKT+ A++ +
Sbjct: 4   ALYRAYRPQKFEDVIGQDHIIKTLKNQI-----YSDNIGHAYLFCGTRGTGKTSTAKIFS 58

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHRLSII-----VEEILYPA 128
           R +    +    P      +     + L+D    V+ ID     S+       E + Y  
Sbjct: 59  RAVNCLNKINEEP----CNECEICESVLKDNTMDVVEIDAASNNSVDDIRELRESVKYSP 114

Query: 129 MEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
                   ++ E             ++++   S    I ATT    +   +  R      
Sbjct: 115 ANAKYKVYIIDEVHMLSQGAFNALLKTLEEPPSYVIFILATTEPHKIPATILSRCQRYDF 174

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
                ++D+   +++  +  G+ + D+A   IA  S+G  R A  +L +   F E  
Sbjct: 175 KRV-TVKDMTLRMKKICEDEGIDIDDKALNLIARNSQGALRDALSILDQCMSFGESK 230


>gi|172037444|ref|YP_001803945.1| DNA polymerase III subunits gamma and tau [Cyanothece sp. ATCC
           51142]
 gi|171698898|gb|ACB51879.1| DNA polymerase III gamma and tau subunits [Cyanothece sp. ATCC
           51142]
          Length = 683

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 78/225 (34%), Gaps = 19/225 (8%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +S  +      RP+T  +  GQ    + L   I + +         LF GP G GKT+ A
Sbjct: 1   MSSYEPLHHKYRPQTFADLVGQEAIATTLSNAIASQRIA----PAYLFTGPRGTGKTSSA 56

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILY 126
           +++A+ L                ++   +      DV+ ID      +  +  I+E   +
Sbjct: 57  RILAKSLNCLAVKVPTASPCGQCEVCRAIARGSALDVIEIDAASNTGVDNIREIIERSQF 116

Query: 127 PAMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             ++      ++ E             ++++    R   + ATT    +   +  R    
Sbjct: 117 APVQCRYKVYVIDECHMLSVAAFNALLKTLEEPPERVIFVLATTDPQRVLPTIISRCQ-R 175

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
                  +E +   +   A+   + +  EA   +A  + G  R A
Sbjct: 176 FDYRRIPLEAMVEHLTIIAQKENIEIEAEALTLVAQIANGGLRDA 220


>gi|86160055|ref|YP_466840.1| DNA polymerase III subunits gamma/tau [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85776566|gb|ABC83403.1| DNA polymerase III, tau subunit [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 606

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 54/242 (22%), Positives = 86/242 (35%), Gaps = 25/242 (10%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+   E +GQ      L      A    +     LF GP G+GKTT A++VA+ L
Sbjct: 7   ARKYRPQRFGEMSGQEHVVRTLS----NALKTGQLAHAFLFTGPRGVGKTTTARLVAKAL 62

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR--DVLFID-----EIHRLSIIVEEILYPAMED 131
                   GP     G     +   E R  DV+ ID      +  +  IVE + Y    D
Sbjct: 63  NCE----QGPTAEPCGVCTPCVEIAEGRAVDVVEIDAASNNGVDNVRDIVEAVKYRPARD 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                +V E             ++++        + ATT V  +   +  R         
Sbjct: 119 RFKVFVVDEVHMLSQGAFNALLKTLEEPPPHVKFVLATTDVHKVPETILSRCQ-RFDFRR 177

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
             ++ +   + + A   G+ ++  A   +A ++ G  R A  LL +VR     A      
Sbjct: 178 LTLQQIADQLAKVAAEEGMRLSPAALALVARQAEGGMRDALSLLDQVRAACGDAPGDDAV 237

Query: 243 RE 244
            E
Sbjct: 238 AE 239


>gi|228989232|ref|ZP_04149226.1| DNA polymerase III subunit gamma/tau [Bacillus pseudomycoides DSM
           12442]
 gi|228770507|gb|EEM19077.1| DNA polymerase III subunit gamma/tau [Bacillus pseudomycoides DSM
           12442]
          Length = 562

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 52/231 (22%), Positives = 85/231 (36%), Gaps = 31/231 (13%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  E+  GQ      L    + A  + +A    LF GP G GKTT+A+V A+ +    
Sbjct: 11  RPQNFEDVVGQKHVTKTL----QNAILQEKASHAYLFSGPRGTGKTTIAKVFAKTINCEH 66

Query: 83  RSTSGPVIAKAGDLAALL--TNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLD 135
                PV     +  A L  T     DVL ID      +  +  I +++ Y         
Sbjct: 67  ----APVAEPCNECPACLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVRYKV 122

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             ++++        I ATT    +   +  R             
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPQHVIFILATTEPHKIPPTIISRCQRFEFRKI---- 178

Query: 187 DLKTIVQRGAKL---TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
            +  IV+R A +    G  V DEA   +A  + G  R A  L+ +   +++
Sbjct: 179 SVHDIVERLATVVTNEGTKVEDEALQIVARAAEGGMRDALSLIDQAISYSD 229


>gi|260905315|ref|ZP_05913637.1| DNA polymerase III, subunits gamma and tau [Brevibacterium linens
           BL2]
          Length = 1148

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/173 (24%), Positives = 59/173 (34%), Gaps = 22/173 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T +E  GQ      LK  IE    R       LF GP G GKTT A+++AR
Sbjct: 4   ALYRRYRPETFDEVIGQEHVTDPLKAAIE----RGRINHAYLFSGPRGCGKTTSARILAR 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR--DVLFID-----EIHRLSIIVEEILYPAM 129
              +N      PV          L N      DV+ ID      +     + E  +Y   
Sbjct: 60  --CLNCAKGPTPVPCGECPSCEDLANGGPGSLDVVEIDAASHNGVDDARDLRERAIYAPA 117

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
            D     ++ E             + V+        I ATT    +   ++ R
Sbjct: 118 RDRYKVFILDEAHMVTSQGFNALLKIVEEPPPHIKFIFATTEPEKVIGTIRSR 170


>gi|304407306|ref|ZP_07388959.1| DNA polymerase III, subunits gamma and tau [Paenibacillus
           curdlanolyticus YK9]
 gi|304343747|gb|EFM09588.1| DNA polymerase III, subunits gamma and tau [Paenibacillus
           curdlanolyticus YK9]
          Length = 597

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 82/224 (36%), Gaps = 21/224 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVAR----- 76
           RP+T  +  GQ      L+  I     R + + H  LF GP G GKT+ A+++A+     
Sbjct: 11  RPQTFHDMVGQRHIIRTLQNAI-----REDRVSHAYLFNGPRGTGKTSAAKILAKAVNCE 65

Query: 77  -----ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEI-HRLSIIVEEILYPAME 130
                E      +  G       D+  +     +R +  I +I  ++     E+ Y    
Sbjct: 66  RGPAPEPCNECDACLGITAGTVMDVVEI-DAASNRGIDEIRDIRDKVRYAPSEVRYKVYI 124

Query: 131 DFQLDLMVGEGPSARSVKINLSR--FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
             ++ ++  E  +A    +         I ATT    L   +  R           +E+ 
Sbjct: 125 IDEVHMLTTEAFNALLKTLEEPPGHVIFILATTEPHKLPPTIISRCQ-RFDFRQVSLEEQ 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
              ++   +  G+   +EA   IA  S G  R A  LL +   F
Sbjct: 184 TERLRLICQEEGIEADEEALAYIARLSEGGMRDAIGLLEQSAAF 227


>gi|269837957|ref|YP_003320185.1| DNA polymerase III, subunits gamma and tau [Sphaerobacter
           thermophilus DSM 20745]
 gi|269787220|gb|ACZ39363.1| DNA polymerase III, subunits gamma and tau [Sphaerobacter
           thermophilus DSM 20745]
          Length = 589

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 57/300 (19%), Positives = 106/300 (35%), Gaps = 37/300 (12%)

Query: 9   SRNVSQEDADISLLRPRTLE--EFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           +   +Q  +     RPR+    EF GQ      L+  I   +         LF GP G G
Sbjct: 9   AETAAQSQSLYRKYRPRSFAPGEFVGQEHIARTLRNAIVLDRVAHAY----LFCGPRGTG 64

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIV 121
           KT+ A+++A+ +                   A+       D++ ID      +  +  + 
Sbjct: 65  KTSTARLLAKAVNCLAPDPEARPCNACEACEAINAGTAV-DIIEIDAASNRGVDDIRDLR 123

Query: 122 EEILYPAMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E++ Y   +      ++ E             ++++        + ATT    L + +  
Sbjct: 124 EKVKYAPTQLRVKFYIIDEAHQLTRDAFNAFLKTLEEPPGHVKFVLATTEPDKLPDTIAS 183

Query: 173 RFGIPIRLNF---YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           R        F     +E L+ + +R     G+   DEA   IA ++ G+ R A  LL ++
Sbjct: 184 RCQRFDFRRFALSDVVEHLRAVCER----EGMEAEDEALRLIARQATGSMRDALGLLEQL 239

Query: 230 RDFAE-VAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAG 288
             F E V     IT +           D++      +  +  +A+   G   G+  I+  
Sbjct: 240 ALFGETVDGKLVITADAVRRVTGMSRSDRL------VALVDALAKKDAG--AGLRVIAEA 291


>gi|226363536|ref|YP_002781318.1| DNA polymerase III subunits gamma and tau [Rhodococcus opacus B4]
 gi|226242025|dbj|BAH52373.1| DNA polymerase III gamma/tau subunit [Rhodococcus opacus B4]
          Length = 747

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/235 (18%), Positives = 79/235 (33%), Gaps = 19/235 (8%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP +  E  GQ      L   ++A +         LF GP G GKT+ A+++AR
Sbjct: 2   ALYRKYRPASFAEVVGQEHVTEPLSTALDAGRINHAY----LFSGPRGCGKTSSARILAR 57

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            L      TS P  +    +A       + DV  +D      +     + +   Y   E 
Sbjct: 58  SLNCVEGPTSTPCGSCPSCVALGPGGSGNLDVTELDAASHGGVDDTRELRDRAFYAPAES 117

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                +V E             + V+        I ATT    +   ++ R         
Sbjct: 118 RYRVFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSR-THHYPFRL 176

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                ++ ++++  +   + V D     +     G+PR +  +L ++   A    
Sbjct: 177 LAPTTMRGLLEKICQQESVPVADPVYPLVIRAGGGSPRDSLSILDQLLAGAGDEG 231


>gi|192362329|ref|YP_001982902.1| DNA polymerase III subunits gamma and tau [Cellvibrio japonicus
           Ueda107]
 gi|190688494|gb|ACE86172.1| DNA polymerase III, gamma and tau subunits [Cellvibrio japonicus
           Ueda107]
          Length = 680

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 84/245 (34%), Gaps = 31/245 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPR   E  GQ      L+  I A       L H  LF G  G+GKTT+A+++A+ L   
Sbjct: 11  RPRVFREMVGQEHV---LQALINA--LDHNRLHHAYLFTGTRGVGKTTIARILAKCLNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEIL-----YPAMEDFQL 134
              +S P     G  AA     E R  D++ +D   R  +     L     Y        
Sbjct: 66  TGVSSEP----CGQCAACREIAEGRFVDLIEVDAASRTKVEDTRELLENVQYAPTRGRYK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             ++ E             ++++        + ATT    L   +  R  +   L     
Sbjct: 122 VYLIDEVHMLSNSSFNALLKTLEEPPPHVKFLLATTDPQKLPMTILSRC-LQFNLKNMNP 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           E +   ++   +   +   + A   +   + G+ R A  L     D A    +  IT   
Sbjct: 181 ERIVQHLKFVLEQELVPYEESALWHLGRAADGSMRDAMSL----TDQAIAYGSGKITESE 236

Query: 246 ADAAL 250
             A L
Sbjct: 237 VSAML 241


>gi|294054461|ref|YP_003548119.1| DNA polymerase III, subunits gamma and tau [Coraliomargarita
           akajimensis DSM 45221]
 gi|293613794|gb|ADE53949.1| DNA polymerase III, subunits gamma and tau [Coraliomargarita
           akajimensis DSM 45221]
          Length = 376

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 81/225 (36%), Gaps = 21/225 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  +E  GQ      L+  IE  +         LFVGP G GKT+ A++ A+ L    
Sbjct: 13  RPKQFDELVGQDHIVQTLRNAIETNRIAHAY----LFVGPRGTGKTSSARLFAKCLNAEG 68

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV-----EEILYPAMEDFQLDLM 137
                P      +++  + +    DV+ ID     S+       ++  Y   +      +
Sbjct: 69  GPNIAPDND--SEISQSIMSGSCMDVIEIDGASNNSVDQVRDLRDDCQYAPTQCSFKIYI 126

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT    +   +  R            E +
Sbjct: 127 IDEVHMLTTAAFNALLKTLEEPPPHVKFIFATTEAHKVLPTIVSRCQ-RFEFRPIADEVI 185

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
              ++  ++  G+ V D A   IA  + G  R +  +L ++  F 
Sbjct: 186 VAKLKTISEAEGIQVEDAALESIARLANGGMRDSQSILDQMISFC 230


>gi|294920987|ref|XP_002778643.1| Replication factor C subunit, putative [Perkinsus marinus ATCC
           50983]
 gi|239887323|gb|EER10438.1| Replication factor C subunit, putative [Perkinsus marinus ATCC
           50983]
          Length = 277

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 51/255 (20%), Positives = 84/255 (32%), Gaps = 48/255 (18%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP  +EE   Q E    LK  +         L H+LF GPPG GKT+    +AR
Sbjct: 24  PWVEKYRPARVEELAHQPEVVGALKEAV-----GTGNLPHLLFYGPPGNGKTSAILALAR 78

Query: 77  -------------ELGVNFRSTSGPVIAKAGDLAALL---------TNLEDRDVLFIDEI 114
                        EL  +       +  K    A +           +     ++ +DE 
Sbjct: 79  ELFGPELWRDRVLELNASDERGIDVIRDKVKKFAQISVRAVAPGSGKSAPPFKIIVLDEA 138

Query: 115 HRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRF 174
             ++   +  L   +E++                  ++RF        V  +  PLQ R 
Sbjct: 139 DSMTKDAQAALRRIIENYT----------------QVTRF--CIICNYVSRIIEPLQSRC 180

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
               R      E  +  ++  A   G+ + + A   +   S G  R A   L+ V     
Sbjct: 181 A-KFRFEPLSDESQRGRLEYIANCEGVKMANGAMEALLGTSNGDLRSAINTLQMVSSC-- 237

Query: 235 VAHAKTITREIADAA 249
           ++  + IT E    A
Sbjct: 238 LSDDEAITVEEILEA 252


>gi|255304953|ref|ZP_05349127.1| DNA polymerase III subunits gamma and tau [Clostridium difficile
           ATCC 43255]
          Length = 545

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 48/237 (20%), Positives = 86/237 (36%), Gaps = 27/237 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     RP+  E+  GQ      LK  I      ++ + H  LF G  G GKT+ A++ +
Sbjct: 4   ALYRAYRPQKFEDVIGQDHIIKTLKNQI-----YSDNIGHAYLFCGTRGTGKTSTAKIFS 58

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHRLSII-----VEEILYPA 128
           R +    +    P      +     + L+D    V+ ID     S+       E + Y  
Sbjct: 59  RAVNCLNKINEEP----CNECEICESVLKDNTMDVVEIDAASNNSVDDIRELRESVKYSP 114

Query: 129 MEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
                   ++ E             ++++   S    I ATT    +   +  R      
Sbjct: 115 ANAKYKVYIIDEVHMLSQGAFNALLKTLEEPPSYVIFILATTEPHKIPATILSRCQRYDF 174

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
                ++D+   +++  +  G+ + D+A   IA  S+G  R A  +L +   F E  
Sbjct: 175 KRV-TVKDITLRMKKICEDEGIDIDDKALNLIARNSQGALRDALSILDQCMSFGESK 230


>gi|254448831|ref|ZP_05062287.1| DNA polymerase III subunit gamma [gamma proteobacterium HTCC5015]
 gi|198261521|gb|EDY85810.1| DNA polymerase III subunit gamma [gamma proteobacterium HTCC5015]
          Length = 556

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 51/252 (20%), Positives = 90/252 (35%), Gaps = 31/252 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP++  E  GQ      L+  I A     + L H  LF G  G+GKTT+A+++A+ L   
Sbjct: 11  RPKSFSELVGQTHV---LRALINA--LDEDRLHHAYLFTGTRGVGKTTIARIIAKSLNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYP-----AMEDFQL 134
              +S P     G+ +A +   E R  D++ +D   R  +     L              
Sbjct: 66  QGVSSTP----CGECSACVEIDEGRFVDLIEVDAASRTKVDDTRELLDNVQYAPTRGRYK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             ++ E             ++++        + ATT    L   +  R  +   L     
Sbjct: 122 VYLIDEVHMLSTSSFNALLKTLEEPPPHVKFLLATTDPQKLPATVLSRC-LQFNLKQMPP 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           E +    +      G+    +A   IA  + G+ R +  LL    D A       +  + 
Sbjct: 181 EAIVAHHEHILGAEGIEYETQALKHIARAAEGSMRDSLSLL----DQAIAFGHGRVRSDD 236

Query: 246 ADAALLRLAIDK 257
             + L  ++ D 
Sbjct: 237 VVSMLGFISRDH 248


>gi|29726698|pdb|1NJG|A Chain A, Nucleotide-Free Form Of An Isolated E. Coli Clamp Loader
           Gamma Subunit
 gi|29726699|pdb|1NJG|B Chain B, Nucleotide-Free Form Of An Isolated E. Coli Clamp Loader
           Gamma Subunit
 gi|30749629|pdb|1NJF|A Chain A, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
           Gamma Subunit
 gi|30749630|pdb|1NJF|B Chain B, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
           Gamma Subunit
 gi|30749631|pdb|1NJF|C Chain C, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
           Gamma Subunit
 gi|30749632|pdb|1NJF|D Chain D, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
           Gamma Subunit
          Length = 250

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 86/242 (35%), Gaps = 25/242 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 18  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 71

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 72  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 131

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++        + ATT    L   +  R  +   L   ++E +
Sbjct: 132 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 190

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +A    A   +A  + G+ R A  L     D A  +    ++ +   A
Sbjct: 191 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAIASGDGQVSTQAVSA 246

Query: 249 AL 250
            L
Sbjct: 247 ML 248


>gi|333030450|ref|ZP_08458511.1| DNA polymerase III, subunits gamma and tau [Bacteroides coprosuis
           DSM 18011]
 gi|332741047|gb|EGJ71529.1| DNA polymerase III, subunits gamma and tau [Bacteroides coprosuis
           DSM 18011]
          Length = 616

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 57/269 (21%), Positives = 86/269 (31%), Gaps = 58/269 (21%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T +   GQ    + LK  I   K         LF GP G+GKTT A++ A+ +
Sbjct: 8   ARKYRPATFDTVVGQDALTATLKNAIATNKLAHAY----LFCGPRGVGKTTCARIFAKTI 63

Query: 79  GVNFRSTSGPV-------------------------IAKAGDLAALLT------NLEDRD 107
                + SG                                D+  L+        +    
Sbjct: 64  NCLTPTPSGEACDNCESCVAFNEQRSFNIHELDAASNNSVEDIRQLVEMVRVPPQVGKYK 123

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           V  IDE+H LS          +E+          P   +V I         ATT    + 
Sbjct: 124 VYIIDEVHMLSAAAFNAFLKTLEE----------PPMHAVFIL--------ATTEKHKIL 165

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             +  R  I    N   +ED    + + A+  G+    EA   IA+++ G  R A  +  
Sbjct: 166 PTILSRCQI-YDFNRIRVEDTVNHLMKVAEKEGVTAEPEALNVIALKADGGMRDALSIFD 224

Query: 228 RVRDFAEVAHAKTITREIADAALLRLAID 256
           +   +        IT +     L  L  D
Sbjct: 225 QTVSYTR----GNITYQGVIENLNLLDYD 249


>gi|327539583|gb|EGF26192.1| DNA polymerase III gamma and tau subunits [Rhodopirellula baltica
           WH47]
          Length = 651

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 59/310 (19%), Positives = 108/310 (34%), Gaps = 33/310 (10%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D +   S +           RPR   +  GQ      L+  IE ++         LF 
Sbjct: 1   MSDDQ---SADNGSYVVVARRYRPRDFTQLVGQDHVARALQGAIETSRVGHAY----LFT 53

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           G  G+GKT+ A++ A+ L      T+ P      D+A  + + ED DV+ ID      I 
Sbjct: 54  GARGVGKTSTARIFAKALNHPDGPTANPDNE--SDVAQAIDSGEDVDVIEIDGASNRGID 111

Query: 121 VEEIL------YPAMEDFQLDLM------VGEGPSARSVKINLSR--FTLIAATTRVGLL 166
               L       P+   +++ ++       G   +A    +         I  TT    +
Sbjct: 112 EIRSLRANVGVRPSRSRYKIYIIDEVHMLTGAAFNALLKTLEEPPEHVKFIFCTTDPEKI 171

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
              +  R          E + +   ++   +     V DEA   +A R+ G+ R +  LL
Sbjct: 172 PITVLSRCQ-RFDFAPVESDKIVQRLREIVEAEDNTVEDEALELLARRAAGSMRDSQSLL 230

Query: 227 RRVRDFAEVAHAKTITREIADAAL---LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIE 283
            +V  F+       +T +     L       + ++     D      +++       G++
Sbjct: 231 EQVLSFS----DGHLTADHVHTMLGTADDQRLHRLAEAMADRDASAALSQIDEAIAAGVD 286

Query: 284 TISAGLSEPR 293
             +  L+E  
Sbjct: 287 --AGRLAEQM 294


>gi|268318939|ref|YP_003292595.1| DNA polymerase III, gamma and tau subunits [Lactobacillus johnsonii
           FI9785]
 gi|262397314|emb|CAX66328.1| DNA polymerase III, gamma and tau subunits [Lactobacillus johnsonii
           FI9785]
          Length = 602

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 80/228 (35%), Gaps = 21/228 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPRT +   GQ      LK  I     R +     LF GP G GKT+ A++ A+ L    
Sbjct: 11  RPRTFDGVVGQTAITDTLKNAI----KRGKISHAFLFAGPRGTGKTSCAKIFAKALNCTN 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P       LAA    +   D++ ID      +  +  I +++ Y   +      +
Sbjct: 67  LQDGEPCNECENCLAADQGTM--NDIIEIDAASNNGVDEIRDIRDKVKYAPTQGKYKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT +  +   +  R          + + +
Sbjct: 125 IDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRIDQHDLI 184

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
              +        +   ++A   IA  + G  R +  +L ++  + +  
Sbjct: 185 AR-MTYILGQEKIDFEEKALEVIAQVADGGMRDSLSILDQILSYDQDK 231


>gi|225861242|ref|YP_002742751.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298229159|ref|ZP_06962840.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae
           str. Canada MDR_19F]
 gi|298255733|ref|ZP_06979319.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae
           str. Canada MDR_19A]
 gi|298503129|ref|YP_003725069.1| DNA-directed DNA polymerase [Streptococcus pneumoniae TCH8431/19A]
 gi|225728151|gb|ACO24002.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298238724|gb|ADI69855.1| DNA-directed DNA polymerase [Streptococcus pneumoniae TCH8431/19A]
          Length = 551

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 53/296 (17%), Positives = 90/296 (30%), Gaps = 58/296 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     R +   +  GQ      LK  +E      E + H  LF GP G GKT++A++ A
Sbjct: 4   ALYRKYRSQNFSQLVGQEVVAKTLKQAVE-----QEKISHAYLFSGPRGTGKTSVAKIFA 58

Query: 76  RELGVNFRS------------------------TSGPVIAKAGDLAALLTN------LED 105
           + +    +                                   ++  +         L  
Sbjct: 59  KAMNCPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLAR 118

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
             V  IDE+H LS      L   +E+                         I ATT +  
Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPT------------------QNVVFILATTELHK 160

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           +   +  R       +    + +K  +    +   ++   EA   IA R+ G  R A  +
Sbjct: 161 IPATILSRVQRFEFKSIKTQD-IKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSI 219

Query: 226 LRRVRDFAEVAHAKTITREIADAALLRLAIDKM--GFDQLDL-RYLTMIARNFGGG 278
           L +     +     T   E     +   A+D       Q D+ + L+ +   F  G
Sbjct: 220 LDQALSLTQGNELTTTISEEITGTISLSALDDYVAALSQQDVPKALSCLNLLFDNG 275


>gi|156098430|ref|XP_001615247.1| hypothetical protein [Plasmodium vivax SaI-1]
 gi|148804121|gb|EDL45520.1| hypothetical protein, conserved [Plasmodium vivax]
          Length = 677

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 77/215 (35%), Gaps = 25/215 (11%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGV-----NFRSTSGPVIAKAGDLAALLTNL-EDRDVL 109
           +++  GPPG GK++L  V+  +           +     + K  D + +   L + + +L
Sbjct: 244 NLILCGPPGSGKSSLVNVIKNKTNNLFISLFHLNNLNNELRKIYDQSVINYKLSKKKTIL 303

Query: 110 FIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
            I +I+RL+   +E L   ++     L+                         + +L   
Sbjct: 304 CIKDINRLNKNQQENLLLILKKGYFYLLAT------------------CLFNPMNILNAS 345

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           L  R  + + LN Y+  +L  I++R      + + D A   I   S G  R+A  ++   
Sbjct: 346 LSSRC-LYLYLNPYDKIELALIIKRIINKLDIDIEDNALNIIMNHSCGDARVAINIIEFA 404

Query: 230 RDFAEVAHAKTITREIADAALLRLAIDKMGFDQLD 264
               E    +   R+  +        D     + D
Sbjct: 405 IKNMERERERDKGRDHRNDPEKDSRNDPEKDHRND 439


>gi|157414264|ref|YP_001485130.1| DNA polymerase, subunits gamma and tau [Prochlorococcus marinus
           str. MIT 9215]
 gi|157388839|gb|ABV51544.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus
           str. MIT 9215]
          Length = 586

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 46/216 (21%), Positives = 77/216 (35%), Gaps = 19/216 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP  L+E  GQ        + ++ A    +     LF GP G GKT+ A++ A+ L    
Sbjct: 13  RPNNLDELVGQKFI----SITLKEALLTQKIAPAYLFNGPRGTGKTSSARIFAKSLNCLA 68

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                       DL   +T+    D++ ID      +  +  I+E   +   +      +
Sbjct: 69  FDKPTINPCCKCDLCRQITDGNALDIIEIDAASNTGVENIREIIERARFAPTQARWKVYV 128

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++   SR   I ATT    + N +Q R             D+
Sbjct: 129 IDECHMLSTAASNALLKTIEEPPSRVIFILATTNPERVLNTIQSRCQ-KFDFRRISPGDI 187

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGR 224
              +   A+   +    +A   IA RS G  R A  
Sbjct: 188 FQHLSEIAEKESIEYEVQALKMIAKRSNGGMRDAQS 223


>gi|114568039|ref|YP_755193.1| ATP-dependent protease La [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114338974|gb|ABI69822.1| putative ATP-dependent protease La [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 670

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 53/267 (19%), Positives = 96/267 (35%), Gaps = 57/267 (21%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV--- 73
           + + +LRP   E+  GQ +A S++      +K       H+L  GPPG+GKT+ A++   
Sbjct: 164 SALEILRPSCREDIIGQGKALSSI-----ISKLNNPYPQHILLYGPPGVGKTSCARLALE 218

Query: 74  VARELGVNFRSTSGPVIA----------------------------KAGDLAA------- 98
           + +    N      P I                                +LA        
Sbjct: 219 MVKGRKGNPFKEDAPFIEVDGTTLRWDPRESTNPLLGSVHDPIYQGAKRELAEEGIPEPK 278

Query: 99  --LLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG-EGPSARSVKINLSR-- 153
             L+++     +LFIDE+  +  +++  L   +ED ++        P    +   + +  
Sbjct: 279 LGLVSDAHGG-ILFIDELGEMDPLLQNKLLKVLEDKRVFFESSYYDPHNERIPQYIKQLF 337

Query: 154 -------FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDE 206
                  F LI ATT+     NP      + +       + ++ +V   AK   + + D 
Sbjct: 338 EKGVPADFILIGATTKSKEEINPAFRSRCMEVFFEPLRADHIRQMVVNSAKKLNINMEDG 397

Query: 207 AACEIAMRSRGTPRIAGRLLRRVRDFA 233
            A  IA  +    R A ++L      A
Sbjct: 398 VAEIIAEYT-AEGRGANKILVDAYALA 423


>gi|269216238|ref|ZP_06160092.1| DNA polymerase III, subunit gamma and tau [Slackia exigua ATCC
           700122]
 gi|269130497|gb|EEZ61575.1| DNA polymerase III, subunit gamma and tau [Slackia exigua ATCC
           700122]
          Length = 862

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 87/234 (37%), Gaps = 22/234 (9%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +A     RP+T ++  GQ+     +K  +E+ +         LF GP G GKTT+A+++A
Sbjct: 3   EALYRKYRPQTFDDVVGQIHIERTIKNALESDRVSHAY----LFCGPRGTGKTTMARLLA 58

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI--IVEEIL----YPAM 129
           + L      T  P   +     A+       DV  +D   R  +  + EEI+    +  +
Sbjct: 59  KALLCEKGPTPAP-DGECEQCLAIAEGTHP-DVNEMDAASRTGVENVREEIIGRVQFAPV 116

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                  ++ E             ++++   S    I  TT    +   +  R       
Sbjct: 117 RGRYKIYIIDEVHMLSTAAFNALLKTLEEPPSHVVFILCTTDPHKVPATIHSRCQ-RFDF 175

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
           +    E++   +       G+    EA    A R++G  R A   L ++  F E
Sbjct: 176 HRLANEEIIARLGAVCASEGVEFEAEALELAAKRAQGGMRDALTTLEQLIAFGE 229


>gi|268325481|emb|CBH39069.1| replication factor C, small subunit [uncultured archaeon]
 gi|268325789|emb|CBH39377.1| replication factor C, small subunit [uncultured archaeon]
          Length = 322

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 56/280 (20%), Positives = 95/280 (33%), Gaps = 45/280 (16%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           +E       RPR LEE +GQ     NL+ +++        L H++F GP G+GKT  A  
Sbjct: 3   REAIWTEKYRPRKLEEVSGQEAIIRNLQSYVK-----KRNLPHLIFSGPAGVGKTAAAVA 57

Query: 74  VARE-----LGVNFRSTSGPVIAKAGDLAALLTNLED--------RDVLFIDEIHRLSII 120
           +ARE        NF   +         +   + N             ++F+DE   L+  
Sbjct: 58  MAREFYDDTWAENFTELNASDERGIEVVRNTIKNFARTMPIGDAAFKIIFLDEADALTDA 117

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            +  L   ME +                        I +      +  P+Q R  +    
Sbjct: 118 AQSALRRTMERYSGT------------------CRFILSCNYSSKIIEPIQSRCSVYRFK 159

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE------ 234
           +    + + +  +  A   GL ++++A   I   S G  R A   L+     +       
Sbjct: 160 SL-SYDAIASRAKYIADTEGLTLSEDALRAINYVSMGDMRRAINALQSASVLSNEIKPEM 218

Query: 235 VAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARN 274
           +       R     AL+  A+     D LD   L ++   
Sbjct: 219 IYEITATARPDEIEALIETAMAGEFLDALDK--LGVLIDK 256


>gi|159027138|emb|CAO86769.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 654

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 84/232 (36%), Gaps = 19/232 (8%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +      RP+T  +  GQ    + L      A          LF GP G GKT+ A+++A
Sbjct: 4   EPLHHKYRPQTFADLVGQSAIATTLS----NALISERIAPAYLFTGPRGTGKTSSARILA 59

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAME 130
           + L         P+      +   + N    DV+ ID      +  +  I+E   +  ++
Sbjct: 60  KSLNCLSSDHPTPIPCGKCSVCQAIANGSALDVIEIDAASNTGVDNIREIIERSQFAPVQ 119

Query: 131 DFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
                 ++ E             ++++    R   + ATT    +   +  R        
Sbjct: 120 CRYKVYVIDECHMLSTAAFNALLKTLEEPPDRVIFVLATTDPQRVLPTIISRCQ-RFDYR 178

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
              ++ +   +Q+ A++  + +  EA   +A  + G  R A  LL ++   A
Sbjct: 179 RIALDAMVAHLQKIAQIEAIDINLEALTLVAQIANGGLRDAESLLDQLSLLA 230


>gi|170722750|ref|YP_001750438.1| DNA polymerase III subunits gamma and tau [Pseudomonas putida W619]
 gi|169760753|gb|ACA74069.1| DNA polymerase III, subunits gamma and tau [Pseudomonas putida
           W619]
          Length = 689

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 65/328 (19%), Positives = 96/328 (29%), Gaps = 65/328 (19%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPR+  E  GQ      LK  I A     + L H  LF G  G+GKTT+A+++A+ L   
Sbjct: 11  RPRSFREMVGQAHV---LKALINA--LDNQRLHHAYLFTGTRGVGKTTIARIIAKCLNCE 65

Query: 82  FRSTS------------------------GPVIAKAGDLAALLTNLE------DRDVLFI 111
              TS                             K  D   LL N++         V  I
Sbjct: 66  TGITSTPCGTCSVCREIDEGRFVDLIEIDAASRTKVEDTRELLDNVQYAPSRGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         I ATT    L   + 
Sbjct: 126 DEVHMLSTHSFNALLKTLEE------------------PPPYVKFILATTDPQKLPATIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L     E +   +    +   +    +A   +   + G+ R A  L     D
Sbjct: 168 SRC-LQFSLKNMSPERVVEHLSHVLEAENVPFEPDALWLLGRAADGSMRDAMSL----TD 222

Query: 232 FAEVAHAKTITREIADAALLRLAIDK-MG-----FDQLDLRYLTMIARNFGGGPVGIETI 285
            A       +      A L  L   +  G      +      L  +      GP     +
Sbjct: 223 QAIAFGEGRVLAADVRAMLGSLDHGQVYGVLQALLEGDARALLEAVRNLAEQGPDWSGVL 282

Query: 286 SAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
           +  L+           P  +  G   R 
Sbjct: 283 AEMLNVLHRVAIAQALPEAVDNGQGDRD 310


>gi|119714583|ref|YP_921548.1| DNA polymerase III, subunits gamma and tau [Nocardioides sp. JS614]
 gi|119535244|gb|ABL79861.1| DNA polymerase III, subunits gamma and tau [Nocardioides sp. JS614]
          Length = 678

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 46/239 (19%), Positives = 77/239 (32%), Gaps = 27/239 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T  E  GQ      L+V +   +         LF GP G GKTT A+++AR
Sbjct: 6   ALYRRYRPETFAEVIGQAHVTEPLRVALANNRVNHAY----LFSGPRGCGKTTSARILAR 61

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR----DVLFID-----EIHRLSIIVEEILYP 127
            L  +      PV    G+  +            DV+ ID      +     + E+  + 
Sbjct: 62  ALNCD----QAPVADPCGECESCRDLARGGPGSIDVIEIDAASHGGVDDARDLREKAFFA 117

Query: 128 AMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            +       ++ E             + V+        I ATT    +   ++ R     
Sbjct: 118 PVRSKYKVYIIDEAHMVTTQGFNALLKLVEEPPPHLRFIFATTEPDKVLPTIRSR-THHY 176

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                    L + +       G+A+   A   +     G+ R    +L ++   A  A 
Sbjct: 177 PFRLIPPRLLSSYLSELCAKEGVAIDPAALPLVVRAGGGSARDTLSVLDQLLGGAGPAG 235


>gi|237738484|ref|ZP_04568965.1| DNA polymerase III gamma and tau [Fusobacterium mortiferum ATCC
           9817]
 gi|229420364|gb|EEO35411.1| DNA polymerase III gamma and tau [Fusobacterium mortiferum ATCC
           9817]
          Length = 483

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 46/241 (19%), Positives = 78/241 (32%), Gaps = 54/241 (22%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
              RP+  EE  GQ E    +K  +   K         LF GP G+GKTTLA+++A+ + 
Sbjct: 7   RKYRPKNFEEVAGQKEIVKTIKTSLRNGKTSHAY----LFTGPRGVGKTTLARLIAKGVN 62

Query: 80  V-------------------------NFRSTSGPVIAKAGDLAALLTNL------EDRDV 108
                                     +             ++  L   +        + +
Sbjct: 63  CLENGITDEPCNRCENCLAINNGTFLDMVEIDAASNRGIDEIRQLKEKINYQPVKGRKKI 122

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
             IDE+H L+      L   +E+                         I ATT    +  
Sbjct: 123 YIIDEVHMLTKEAFNALLKTLEE------------------PPEHVIFILATTEADKILP 164

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            +  R           + D+K  ++   K  G+ ++D+    I   S G+ R A  +L R
Sbjct: 165 TIISRCQ-RYDFKTLSLNDMKEQLRFIGKNEGVDISDDVLELIYESSGGSVRDAVSILER 223

Query: 229 V 229
           +
Sbjct: 224 I 224


>gi|163737243|ref|ZP_02144661.1| DNA polymerase III, subunits gamma and tau [Phaeobacter
           gallaeciensis BS107]
 gi|161389847|gb|EDQ14198.1| DNA polymerase III, subunits gamma and tau [Phaeobacter
           gallaeciensis BS107]
          Length = 606

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 61/310 (19%), Positives = 107/310 (34%), Gaps = 31/310 (10%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           +   SQ        RP T  +  GQ      LK    A +         +  G  G GKT
Sbjct: 8   TAGQSQYQVLARKYRPETFADLVGQDAMVRTLKNAFAADRIAQA----FIMTGIRGTGKT 63

Query: 69  TLAQVVARELGVNFRSTS-GPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSI-----I 120
           T A+++A+ +         GP     G        +E R  DV+ +D   R  +     I
Sbjct: 64  TTARIIAKGMNCIGEDGQGGPTTEPCGKCEHCTAIMEGRHVDVMEMDAASRTGVGDIREI 123

Query: 121 VEEILYPAMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           ++ + Y A        ++ E             ++++   +    I ATT +  +   + 
Sbjct: 124 IDSVQYRAASARYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVL 183

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R      L   E E +  ++Q+ A      + ++A   I   + G+ R A  LL    D
Sbjct: 184 SRCQ-RFDLRRIEPEVMIGLLQKIAGAENAQIAEDALALITRAAEGSARDATSLL----D 238

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
            A    A   T +   A L      ++  D +D     ++  +       +    A  ++
Sbjct: 239 QAISHGAGETTADQVRAMLGLADRGRV-LDLID----MILRGDAAAALTELSAQYAEGAD 293

Query: 292 PRDAIEDLIE 301
           P   + DL E
Sbjct: 294 PLAVLRDLAE 303


>gi|320546449|ref|ZP_08040764.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus equinus
           ATCC 9812]
 gi|320448834|gb|EFW89562.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus equinus
           ATCC 9812]
          Length = 559

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 48/255 (18%), Positives = 89/255 (34%), Gaps = 21/255 (8%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     R +T +E  GQ    + LK  + + K         LF GP G GKT+ A++ A+
Sbjct: 4   ALYRKYRSQTFDEMVGQTVISTTLKQAVSSGKISHAY----LFSGPRGTGKTSAAKIFAK 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +    +    P      D+   +TN    DV+ ID      +  +  I ++  Y     
Sbjct: 60  AMNCPHQVNGEPCNQC--DICRDITNGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSRA 117

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++   +    I ATT +  +   +  R         
Sbjct: 118 TYKVYIIDEVHMLSTGAFNALLKTLEEPTANVVFILATTELHKIPATILSRVQ-RFEFKA 176

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            +   ++  +       G++   +A   IA R+ G  R A  +L +        H     
Sbjct: 177 IKPAAIREHLGHILDKEGISYDKDALTLIARRAEGGMRDALSILDQALSLTTDNHVSLAI 236

Query: 243 REIADAALLRLAIDK 257
            E    ++   A+D 
Sbjct: 237 AEEITGSISMAALDD 251


>gi|224026026|ref|ZP_03644392.1| hypothetical protein BACCOPRO_02779 [Bacteroides coprophilus DSM
           18228]
 gi|224019262|gb|EEF77260.1| hypothetical protein BACCOPRO_02779 [Bacteroides coprophilus DSM
           18228]
          Length = 641

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 78/228 (34%), Gaps = 20/228 (8%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T +   GQ    + LK  I   K         LF GP G+GKTT A++ A+ +
Sbjct: 23  ARKYRPATFDTVVGQRALTTTLKNAIANQKLAHAY----LFCGPRGVGKTTCARIFAKTI 78

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII------VEEILYPAMEDF 132
                   G    +     A        ++  +D     S+        +  + P +  +
Sbjct: 79  NCLHPKEDGEACNECESCQA-FNEQRSYNIHELDAASNNSVEDIRSLIEQVRIPPQIGKY 137

Query: 133 QLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           ++ ++               ++++        I ATT    +   +  R  I    N   
Sbjct: 138 KVYIIDEVHMLSQAAFNAFLKTLEEPPHHAIFILATTEKHKILPTILSRCQI-YDFNRIS 196

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           + D+   ++  A    +    EA   IA ++ G  R A  +  +V  F
Sbjct: 197 VSDMVEHLESVALKEHVEAEPEALNVIAQKADGGMRDALSIFDQVVSF 244


>gi|291278574|ref|YP_003495409.1| DNA polymerase III gamma/tau subunits [Deferribacter desulfuricans
           SSM1]
 gi|290753276|dbj|BAI79653.1| DNA polymerase III, gamma/tau subunits [Deferribacter desulfuricans
           SSM1]
          Length = 526

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 83/249 (33%), Gaps = 59/249 (23%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     RP++ +E   Q      LK  IE  +     + H  LF GP G+GKT+ A++ A
Sbjct: 5   ALARKYRPQSFDEIVYQDYIVKTLKNAIELNR-----ISHAYLFTGPRGIGKTSTARIFA 59

Query: 76  RELGV------------------------NFRSTSGPVIAKAGDLAALLTNLE------D 105
           + L                          +     G       ++  L  +++       
Sbjct: 60  KALNCLSPEGVNPCNKCENCVEVTNGTSLDVYEIDGASNRGIDEIRQLRESVKFLPTKSK 119

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
             +  IDE+H L+      L   +E+    +  +     + R     LSR          
Sbjct: 120 YKIYIIDEVHMLTEAAFNALLKTLEEPPSYVIFIFATTDAHRIPATILSRCQ-------- 171

Query: 164 GLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAG 223
                    RF      +   IE +++I++R      +   ++A   I   S G  R   
Sbjct: 172 ---------RFNFSKIPDLKLIEHIRSILER----ENIEYEEDAVNLIVRNSDGCVRDCL 218

Query: 224 RLLRRVRDF 232
            L+ +V  +
Sbjct: 219 SLIDQVIAY 227


>gi|317488829|ref|ZP_07947360.1| DNA polymerase III [Eggerthella sp. 1_3_56FAA]
 gi|316912058|gb|EFV33636.1| DNA polymerase III [Eggerthella sp. 1_3_56FAA]
          Length = 506

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 52/236 (22%), Positives = 82/236 (34%), Gaps = 22/236 (9%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +A     RP+  E+  GQ      +K  IE  K         LF GP G GKTT A+++A
Sbjct: 3   EALYRKYRPQIFEDVVGQEHIERTIKNAIEQDKVSHAY----LFTGPRGTGKTTTARLLA 58

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI--IVEEIL----YPAM 129
           + L         P      D   ++ N E  DV  +D   R  +  + EEI+    +   
Sbjct: 59  KALLCEC--GPTPEPDGTCDDCVMIANGEHPDVYELDAASRTGVENVREEIIGRVQFAPT 116

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                  ++ E             ++++   S    I ATT    +   +  R       
Sbjct: 117 RGRYKIYIIDEVHMLSTAAFNALLKTLEEPPSHVVFILATTDPQKVPETIHSRCQ-RFDF 175

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
                E + + +        +    EA   IA R+ G  R A   L ++  F E  
Sbjct: 176 RRISAESIVSRLGAICVSEDVEFEGEALDLIAHRAEGGMRNALTSLEQLIAFGEGK 231


>gi|255327658|ref|ZP_05368724.1| DNA polymerase III subunit tau [Rothia mucilaginosa ATCC 25296]
 gi|255295332|gb|EET74683.1| DNA polymerase III subunit tau [Rothia mucilaginosa ATCC 25296]
          Length = 957

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 60/307 (19%), Positives = 97/307 (31%), Gaps = 40/307 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T  E  GQ      L V +E  +         LF GP G GKTT A+++AR
Sbjct: 4   ALYRRYRPETFAEVIGQEHVTEPLMVALEKNRVNHAY----LFSGPRGCGKTTSARILAR 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR--DVLFID-----EIHRLSIIVEEILYPAM 129
              +N      P      D    L+       DV+ +D      +     + E      +
Sbjct: 60  --CLNCAQGPTPTPCGVCDSCRELSRDGGGSLDVIEMDAASHGGVDHARDLRERATLAPV 117

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            D     ++ E             + V+        I ATT    +   ++ R       
Sbjct: 118 RDRYKIFIIDEAHMVTREGFNALLKIVEEPPEHVKFIFATTEPNKVLGTIRSR-THHYPF 176

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
                E L   +Q       +AV       +     G+ R +  +L ++     +A A +
Sbjct: 177 RLVPPEVLLPFLQGLCDQEQVAVEPGVLQLVIRAGGGSVRDSLSILDQL-----MAGASS 231

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV-----GIETISAGLSEPRDA 295
                 D A+  L            + L  +    G          +  + A   +PR  
Sbjct: 232 QNGIEYDRAVALLGY-------THAQLLDEVIEALGAKDAPTLFGAVSRVVATGQDPRRF 284

Query: 296 IEDLIEP 302
           +EDL+E 
Sbjct: 285 VEDLLER 291


>gi|229083335|ref|ZP_04215695.1| DNA polymerase III subunit gamma/tau [Bacillus cereus Rock3-44]
 gi|228699982|gb|EEL52607.1| DNA polymerase III subunit gamma/tau [Bacillus cereus Rock3-44]
          Length = 562

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 52/231 (22%), Positives = 85/231 (36%), Gaps = 31/231 (13%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  E+  GQ      L    + A  + +A    LF GP G GKTT+A+V A+ +    
Sbjct: 11  RPQNFEDVVGQKHVTKTL----QNALLQEKASHAYLFSGPRGTGKTTIAKVFAKAINCEH 66

Query: 83  RSTSGPVIAKAGDLAALL--TNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLD 135
                PV     +  A L  T     DVL ID      +  +  I +++ Y         
Sbjct: 67  ----APVAEPCNECPACLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVRYKV 122

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             ++++        I ATT    +   +  R             
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPQHVIFILATTEPHKIPPTIISRCQRFEFRKI---- 178

Query: 187 DLKTIVQRGAKL---TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
            +  IV+R A +    G  V DEA   +A  + G  R A  L+ +   +++
Sbjct: 179 SVHDIVERLATVVTNEGTKVEDEALQIVARAAEGGMRDALSLIDQAISYSD 229


>gi|145590270|ref|YP_001152272.1| replication factor C large subunit [Pyrobaculum arsenaticum DSM
           13514]
 gi|158514159|sp|A4WGV3|RFCL_PYRAR RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|145282038|gb|ABP49620.1| AAA ATPase, central domain protein [Pyrobaculum arsenaticum DSM
           13514]
          Length = 422

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 61/274 (22%), Positives = 93/274 (33%), Gaps = 44/274 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEA-------------AKARAEALDH--VLFVG 61
             +   RP++  +   Q EA   L  +I A              K   E LD   VL  G
Sbjct: 4   PWVEKYRPKSFADVVDQEEAKYVLASWICARFRAPKDFCTRWAKKKDKEILDARAVLLAG 63

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED--------RDVLFIDE 113
           PPG+GKTTL   +ARE+G      +   +  A  L  ++               ++  DE
Sbjct: 64  PPGVGKTTLIHALAREIGYELIELNASDVRTAERLKEVVGRGLREGSLFGYGGKIVLFDE 123

Query: 114 IHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           +  L +  +     A       + + E      V           A         PL+D 
Sbjct: 124 VDGLHVKEDAGGLEA------IIEIIENSKVPIVM---------TANNPYDPRFRPLRD- 167

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
             + + L     E++  +++R     G    +EA   IA  S G  R A   L+      
Sbjct: 168 ISLVVNLKRLSEEEVVEVLRRICTSEGAKCEEEALRSIAKSSLGDLRAAINDLQMYLS-- 225

Query: 234 EVAHAKTITREIADAALLRLAIDKMGFDQLDLRY 267
                KT+T +       R     M F+ LD  Y
Sbjct: 226 --GGRKTLTVDDIKRVGERNPQLSM-FEILDRVY 256


>gi|284006438|emb|CBA71683.1| DNA polymerase III subunit gamma/tau [Arsenophonus nasoniae]
          Length = 659

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 51/245 (20%), Positives = 87/245 (35%), Gaps = 31/245 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T  +  GQ    + L     A   + + L H  LF G  G+GKTT+A++ A+ L   
Sbjct: 11  RPQTFTDVVGQQHVLTAL-----ANGLQQQRLHHAYLFSGTRGVGKTTIARLFAKGLNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILY------PAMEDFQ 133
              +  P     G     L     R  D++ ID   R  +     L       PA   F+
Sbjct: 66  VGISQNP----CGQCVNCLEIAHGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFK 121

Query: 134 LDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           + L+               ++++        + ATT    L   +  R  +   L   +I
Sbjct: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPITVLSRC-LQFHLRTLDI 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           + + + ++R      ++    A   IA  + G+ R A  L     D A       +  + 
Sbjct: 181 DQISSQLERILAAEQISSDKRARQLIARAAEGSLRDALSL----TDQAIAMGQGKVLADS 236

Query: 246 ADAAL 250
               L
Sbjct: 237 VSQML 241


>gi|296088557|emb|CBI37548.3| unnamed protein product [Vitis vinifera]
          Length = 1207

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 56/250 (22%), Positives = 94/250 (37%), Gaps = 23/250 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE-------ALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++F GQ      L+  +   K   E           VL  GPPG GKT LA+ +A E 
Sbjct: 666 TFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA 725

Query: 79  GVNFRSTSGP---------VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           G+ F + +G            ++  DL A   +     ++FIDEI  +            
Sbjct: 726 GLPFFAANGTDFVEMFVGVAASRVKDLFASARSFSP-SIIFIDEIDAIGSKRGGPDIGGG 784

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
              +   ++         K++ ++  +I AT R+ +L   L    RF   IR+     + 
Sbjct: 785 GAEREQGLLQILTEMDGFKVSTAQVLVIGATNRLDILDPALLRKGRFDKIIRVGLPSKDG 844

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT----ITR 243
              I++  A+       +E    +   +  T    G  L+ + + A +  A+     I R
Sbjct: 845 RLAILKVHARNKFFRSEEEKEALLQEIAELTEDFTGAELQNILNEAGILTARKDLDYIGR 904

Query: 244 EIADAALLRL 253
           E    AL R 
Sbjct: 905 EELLEALKRQ 914


>gi|198476564|ref|XP_002132399.1| GA25212 [Drosophila pseudoobscura pseudoobscura]
 gi|198137754|gb|EDY69801.1| GA25212 [Drosophila pseudoobscura pseudoobscura]
          Length = 333

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/273 (15%), Positives = 82/273 (30%), Gaps = 48/273 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP +L++     E    +  FI       + L H+LF GPPG GKT+     AR
Sbjct: 12  PWVEKYRPYSLDDLISHDEIILTINRFIS-----QKQLPHLLFYGPPGTGKTSTILACAR 66

Query: 77  E------LGVNFRSTSGPVIAKAGDLA-ALLTNLEDRDVLF-------IDEIHRLSIIVE 122
           +              +       G +   +L     R +         +DE   ++   +
Sbjct: 67  QLYPPALFKSMVLELNASDDRGIGIVRGQILNFASTRTIFCDTFKLIILDEADAMTNDAQ 126

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             L   +E +                              +  +   LQ R     R   
Sbjct: 127 NALRRIIEKYT------------------DNVRFCIICNYLSKIIPALQSRC-TRFRFAP 167

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK--- 239
              + +   +++  +   + +T+     +   S+G  R    +L+      +V +     
Sbjct: 168 LSPDKMIPRLEQIVQSEDIKITENGKKALLTLSKGDMRKVLNVLQSTAMAFDVVNEDNVY 227

Query: 240 -------TITREIADAALLRLAIDKMGFDQLDL 265
                      E    ALL     ++ F  +D+
Sbjct: 228 MCAGYPLRQDIENILKALLSGHNFEVSFQNVDV 260


>gi|114565606|ref|YP_752760.1| DNA-directed DNA polymerase [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114336541|gb|ABI67389.1| DNA-directed DNA polymerase [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 499

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 52/241 (21%), Positives = 83/241 (34%), Gaps = 55/241 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPR   E  GQ +  + L+  +   K     L H  LF GP G GKT++A+++A+ +   
Sbjct: 11  RPRRFAEVVGQEKTVTALRNAVREGK-----LSHAYLFSGPRGTGKTSIAKIIAKAVNCE 65

Query: 82  FRST---------------------------SGPVIAKAGDLAALLTNL---EDRDVLFI 111
             S                            S   I +  DL   +  L       V  I
Sbjct: 66  NLSEGEPCNQCSSCQDINNGNFMDVIEIDAASNRGIDEIRDLREKVRVLPAQGKNKVYII 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H L+      L   +E+          P A            I ATT    +   ++
Sbjct: 126 DEVHMLTTEAFNALLKTIEEP---------PDA---------VIFILATTESHKIPATIR 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +         E +   +   A   G+ +  EA   +A R+ G  R A  +L ++  
Sbjct: 168 SRCQVYNFRRLTTAE-ITERLSDVAANDGIILEPEALLLLARRANGGMRDALSMLDQIYS 226

Query: 232 F 232
           +
Sbjct: 227 Y 227


>gi|328870657|gb|EGG19030.1| replication factor C subunit [Dictyostelium fasciculatum]
          Length = 358

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 74/229 (32%), Gaps = 16/229 (6%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            +  +S  RPRT+++   Q E    LK  ++       AL H+LF GPPG GKT+    +
Sbjct: 27  PEPWVSKYRPRTVDDVAHQDEVVRALKKSLD-----GGALPHLLFYGPPGTGKTSTILAI 81

Query: 75  ARE------LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           A +      +       +         +   + N     V       +     + I+   
Sbjct: 82  AMDLYGPDLIKDRVLELNASDERGIEIVRTKIKNFASFTVNNTTVAGKQVPSFKLIILDE 141

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
            +    D    +    R+++              +  +  PL  R     R    + E +
Sbjct: 142 ADSMTQD---AQAALRRTIENTSKTTRFCLLCNYITRIIEPLSSRCA-KFRFKPLKSEAM 197

Query: 189 KTIVQRGAKLTGLA-VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
              ++  A   G+    +     I   S+G  R A   ++    F    
Sbjct: 198 GERLKYIADQEGVNLANESTLDAIHTVSQGDMRKAITFMQSAHRFYASK 246


>gi|157826351|ref|YP_001494071.1| DNA polymerase III subunits gamma and tau [Rickettsia akari str.
           Hartford]
 gi|157800309|gb|ABV75563.1| DNA polymerase III subunits gamma and tau [Rickettsia akari str.
           Hartford]
          Length = 509

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 82/232 (35%), Gaps = 21/232 (9%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP    E  GQ      L   I   +         L  G  G+GKTT A+++A+ +
Sbjct: 14  ARKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGY----LLTGIRGVGKTTSARIIAKAV 69

Query: 79  GVNFRSTSGPVIAKAGDLAALLT--NLEDRDVLFIDEIHRLS-----IIVEEILYPAMED 131
             +   T    I    +    ++  N    D++ ID   + S      I+E   Y  ++ 
Sbjct: 70  NCSALITENTTIKTCEECTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQG 129

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT V  +   +  R      L  
Sbjct: 130 KHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQ-RYDLRR 188

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
              E++  +++  AK   L    E+   IA +S G+ R A  +L +    + 
Sbjct: 189 LNFEEIFKLLEYIAKQENLKTDIESLRIIAYKSEGSARDAVSILDQAASMSA 240


>gi|169833967|ref|YP_001694317.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae
           Hungary19A-6]
 gi|168996469|gb|ACA37081.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae
           Hungary19A-6]
          Length = 551

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 52/296 (17%), Positives = 90/296 (30%), Gaps = 58/296 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     R +   +  GQ      LK  +E      E + H  LF GP G GKT++A++ A
Sbjct: 4   ALYRKYRSQNFSQLVGQEVVAKTLKQAVE-----QEKISHAYLFSGPRGTGKTSVAKIFA 58

Query: 76  RELGVNFRS------------------------TSGPVIAKAGDLAALLTN------LED 105
           + +    +                                   ++  +         L  
Sbjct: 59  KAMNCPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLAR 118

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
             +  IDE+H LS      L   +E+                         I ATT +  
Sbjct: 119 YKIYIIDEVHMLSTGAFNALLKTLEEPT------------------QNVVFILATTELHK 160

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           +   +  R       +    + +K  +    +   ++   EA   IA R+ G  R A  +
Sbjct: 161 IPATILSRVQRFEFKSIKTQD-IKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSI 219

Query: 226 LRRVRDFAEVAHAKTITREIADAALLRLAIDKM--GFDQLDL-RYLTMIARNFGGG 278
           L +     +     T   E     +   A+D       Q D+ + L+ +   F  G
Sbjct: 220 LDQALSLTQGNELTTAISEEITGTISLSALDDYVAALSQQDVPKALSCLNLLFDNG 275


>gi|226311383|ref|YP_002771277.1| ATP-dependent protease La homolog [Brevibacillus brevis NBRC
           100599]
 gi|226094331|dbj|BAH42773.1| ATP-dependent protease La homolog [Brevibacillus brevis NBRC
           100599]
          Length = 565

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 61/268 (22%), Positives = 92/268 (34%), Gaps = 58/268 (21%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +      RP TLEE  GQ +    L+     A        HV+  GPPG+GKT  A+VV 
Sbjct: 58  EPLSERTRPATLEEIVGQEDGLRALR-----AALCGPNPQHVIIYGPPGVGKTAAARVVL 112

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDV--------------------------- 108
            E   N  S      AK  ++ A +   ++R +                           
Sbjct: 113 EEAKKNQLSPFSS-DAKFIEIDATIARFDERGIADPLIGSVHDPIYQGAGSLGQAGIPQP 171

Query: 109 ------------LFIDEIHRLSIIVEEILYPAMEDFQLDL----MVGEGPSARSVKINL- 151
                       LF+DEI  L  I    L   +ED ++ L       E     S   ++ 
Sbjct: 172 KPGAVTKAHGGMLFLDEIGELHPIQMNKLLKVLEDRKVMLESAYYSEENNQIPSHIHDVF 231

Query: 152 -----SRFTLIAATTRVG-LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTD 205
                + F L+ ATTR+   L   L+ R  + I     +  ++  IV+       + + D
Sbjct: 232 KYGLPADFRLVGATTRLPEELPAALRSRC-LEIFFRPLKAGEIGCIVRTAVPKMNMNIED 290

Query: 206 EAACEIAMRSRGTPRIAGRLLRRVRDFA 233
            A   I   +    R A   L+     A
Sbjct: 291 SAVSVIERYATN-GREAINTLQIAAGIA 317


>gi|194761822|ref|XP_001963122.1| GF15785 [Drosophila ananassae]
 gi|190616819|gb|EDV32343.1| GF15785 [Drosophila ananassae]
          Length = 332

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/241 (16%), Positives = 74/241 (30%), Gaps = 39/241 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP  L++     E  S +  FI       + L H+LF GPPG GKT+     AR
Sbjct: 12  PWVEKYRPSGLDDLISHEEIISTISRFIS-----RKQLPHLLFYGPPGTGKTSTILACAR 66

Query: 77  ------ELGVNFRSTSGPVIAKAGDLA-ALLTNLEDRDVLF-------IDEIHRLSIIVE 122
                 +        +       G +   +L     R +         +DE   ++   +
Sbjct: 67  QLYSPQQFKSMVLELNASDDRGIGIVRGQILNFASTRTIFCDTFKLIILDEADAMTNDAQ 126

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             L   +E +                              +  +   LQ R     R   
Sbjct: 127 NALRRIIEKYT------------------DNVRFCVICNYLSKIIPALQSRC-TRFRFAP 167

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR-RVRDFAEVAHAKTI 241
              + +   +++      + +T++    +   ++G  R    +L+  V  F +V      
Sbjct: 168 LSPDQMMPRLEKIIDAEAVQITEDGKRALLTLAKGDMRKVLNVLQSTVMAFDKVNEDNVY 227

Query: 242 T 242
           T
Sbjct: 228 T 228


>gi|118469964|ref|YP_890504.1| DNA polymerase III subunits gamma and tau [Mycobacterium smegmatis
           str. MC2 155]
 gi|118171251|gb|ABK72147.1| DNA polymerase III gamma/tau subunit [Mycobacterium smegmatis str.
           MC2 155]
          Length = 665

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/240 (18%), Positives = 77/240 (32%), Gaps = 23/240 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T  E  GQ      L   + A +         LF GP G GKT+ A+++AR
Sbjct: 2   ALYRKYRPATFSEVVGQEHVTEPLCTALTAGRINHAY----LFSGPRGCGKTSSARILAR 57

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILY------PA 128
            L  +      P      D    L        DV+ +D      +     L       PA
Sbjct: 58  SLNCD--QGPTPTPCGVCDSCVALAPNGPGNVDVVELDAASHGGVDDTRELRDRAFYAPA 115

Query: 129 MEDFQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
              +++ ++         G     + V+        + ATT    +   ++ R       
Sbjct: 116 QSRYRIFIVDEAHMVTTAGFNALLKIVEEPPDHLIFVFATTEPEKVLPTIRSR-THHYPF 174

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
                  ++ +++R      + V D     +     G+PR    +L ++   +E      
Sbjct: 175 RLLAPRTMRPLLERICAEENVEVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGSEQGANGN 234


>gi|293400034|ref|ZP_06644180.1| DNA polymerase III, gamma and tau subunits [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291306434|gb|EFE47677.1| DNA polymerase III, gamma and tau subunits [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 601

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 83/226 (36%), Gaps = 22/226 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP + +E  GQ      LK  +E  K         LF GP G GKT++A++ A+ +    
Sbjct: 11  RPNSFDEVYGQKHIVQTLKHAVEQNKIAHAY----LFCGPRGTGKTSIAKIFAKTINCTD 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
             T      K  +  A+       D++ ID      +  +  ++E++ Y  ++      +
Sbjct: 67  EHTKA--CGKCENCIAVQEGNHP-DIIEIDAASNNGVEEVRTLIEKVKYAPLKGKYKVYI 123

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT    +   +  R             D+
Sbjct: 124 IDEVHMMSTGAFNALLKTIEEPPEHVIFILATTEPHKVLPTIISRCQ-RFDFTKIPRNDI 182

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
           +  ++   +   L   DE    IA  + G  R A  +L +   +A+
Sbjct: 183 ENRLRDVLQGEQLTCEDEVIRIIAQLADGGLRDALSILDQCIAYAQ 228


>gi|212546601|ref|XP_002153454.1| DNA replication factor C subunit Rfc2, putative [Penicillium
           marneffei ATCC 18224]
 gi|210064974|gb|EEA19069.1| DNA replication factor C subunit Rfc2, putative [Penicillium
           marneffei ATCC 18224]
          Length = 394

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 51/280 (18%), Positives = 88/280 (31%), Gaps = 59/280 (21%)

Query: 9   SRNVSQE---DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           S N  ++      +   RP++L++   Q    + L+  ++A+      L H+LF GPPG 
Sbjct: 29  SENAEEKARLQPWVEKYRPKSLDDVAAQDHTTTVLQRTLQAS-----NLPHMLFYGPPGT 83

Query: 66  GKTTLAQVVAR-------------ELGVNFRSTSGPVIAKAGDLAA--------LLTNLE 104
           GKT+    +A+             EL  +       V  K  D A         L     
Sbjct: 84  GKTSTILALAKSLFGPTLYRTRILELNASDERGINIVREKIKDFARTQLSQPSGLDAAYR 143

Query: 105 DR------DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIA 158
           ++       ++ +DE   ++   +  L   ME +                   SR T   
Sbjct: 144 EKYPCPPFKIIILDEADSMTQDAQSALRRTMEQY-------------------SRITRFC 184

Query: 159 A-TTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRG 217
                V  +  PL  R           +     I +  A   GL + +     +   S G
Sbjct: 185 LVCNYVTRIIEPLASRCSKFRFKALDGVSAGDRISE-IAAAEGLTLDEGVVETLIRCSEG 243

Query: 218 TPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257
             R A   L+     A +  A    ++ +         D 
Sbjct: 244 DLRRAITYLQ---SAARLVGATQPVKKDSQDDTEMTDADS 280


>gi|196003908|ref|XP_002111821.1| hypothetical protein TRIADDRAFT_50137 [Trichoplax adhaerens]
 gi|190585720|gb|EDV25788.1| hypothetical protein TRIADDRAFT_50137 [Trichoplax adhaerens]
          Length = 373

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 58/268 (21%), Positives = 90/268 (33%), Gaps = 50/268 (18%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           D E   S NVS     +   RPR++++   Q E  S L+  ++ A      L + LF GP
Sbjct: 23  DGERKSSSNVS--VPWVEKYRPRSIDDVAHQDEVVSVLRKCLQGAD-----LPNFLFYGP 75

Query: 63  PGLGKTTLAQVVARELGVNFRSTS------------GPVIAKAGDLAALLTNLEDRD--- 107
           PG GKT+     AR L  +    S              VI +     A L+    R    
Sbjct: 76  PGTGKTSTILAAARHLYGSDIYRSRVLELNASDDRGIQVIREKIKTFAQLSVANQRPDGT 135

Query: 108 ------VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATT 161
                 ++ +DE   ++   +  L   ME +                   +RF       
Sbjct: 136 PCPPFKIIILDEADSMTHAAQAALRRTMEKYSKT----------------TRF--CLICN 177

Query: 162 RVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRI 221
            V  +  PL  R     R        L   +   ++   L    +A   I   S G  R 
Sbjct: 178 YVSRIIEPLTSRCS-KFRFKPLPENILLHHLSAISEKENLDCDKQALRNIISISEGDMRK 236

Query: 222 AGRLLRRVRDFAEVAHAKTITREIADAA 249
           A   ++ V   + + + K IT E    +
Sbjct: 237 AITYIQSV---SRLYNDKRITSERIIES 261


>gi|326472467|gb|EGD96476.1| DNA replication factor C subunit [Trichophyton tonsurans CBS
           112818]
          Length = 352

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 46/240 (19%), Positives = 81/240 (33%), Gaps = 38/240 (15%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           + R  L    V+ E   +   RP  L++  G  E    LK+      AR   + HV+  G
Sbjct: 14  IARADLSGAPVNYELPWVEKYRPIFLDDVVGNTETIERLKII-----ARDGNMPHVIISG 68

Query: 62  PPGLGKTTLAQVVAR-----ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDV-------- 108
            PG+GKTT    +AR              +         +   +     + V        
Sbjct: 69  MPGIGKTTSILCLARQLLGDTYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRHK 128

Query: 109 -LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
            + +DE   ++   ++ L   ME F                   +RF    A  +   + 
Sbjct: 129 LVILDEADSMTSGAQQALRRTMEIFSTT----------------TRFAF--ACNQSNKII 170

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
            PLQ R  I       + + +K ++Q   +   +  +D+    +   + G  R A   L+
Sbjct: 171 EPLQSRCAILRYSRLTDAQVVKRLMQ-ICEAEKVKYSDDGIAALVFSAEGDMRQAINNLQ 229


>gi|325267530|ref|ZP_08134183.1| DNA polymerase III, gamma/tau subunit DnaX [Kingella denitrificans
           ATCC 33394]
 gi|324981055|gb|EGC16714.1| DNA polymerase III, gamma/tau subunit DnaX [Kingella denitrificans
           ATCC 33394]
          Length = 697

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 49/296 (16%), Positives = 92/296 (31%), Gaps = 60/296 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T  +  GQ      L+  ++  +     L H  L  G  G+GKTT+A+++A+ L   
Sbjct: 12  RPKTFADLVGQQHVVKALQNALDKGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCE 66

Query: 82  FRS------------------------TSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                                ++  +L N +         V  I
Sbjct: 67  NAQHGEPCGQCQSCRDIDAGRFVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYII 126

Query: 112 DEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+H LS      +   +E+    +  ++      +     LSR                
Sbjct: 127 DEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPITVLSRCLQFVLRN-------- 178

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
                           + +   +    K   +     A   +   ++G+ R A  LL + 
Sbjct: 179 -------------LTPQQVADHLTHVLKTEKIVYEPAALALLGRAAQGSMRDALSLLDQT 225

Query: 230 RDFAEVAHAKTITREIADAALLRLAIDKMGF-DQLDLRYLTMIARNFGGGPVGIET 284
                 +  +T  R++  A   R   + + F  + D   L   A+   G  VG ++
Sbjct: 226 IAMGSGSVKETDVRDMIGAVDKRYLYELLTFLMEQDGTQLMQKAQEMAGNAVGFDS 281


>gi|290580054|ref|YP_003484446.1| DNA polymerase III subunit gamma/tau [Streptococcus mutans NN2025]
 gi|254996953|dbj|BAH87554.1| DNA polymerase III gamma/tau subunit [Streptococcus mutans NN2025]
          Length = 558

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 55/271 (20%), Positives = 98/271 (36%), Gaps = 21/271 (7%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     R +T +E  GQ      LK  + A+K  + A    LF GP G GKT+ A++ A+
Sbjct: 4   ALYRKYRSQTFDEMVGQEVVAKTLKQAV-ASKKISHAY---LFSGPRGTGKTSAAKIFAK 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +    ++   P      D+   +TN    DV+ ID      +  +  I ++  Y     
Sbjct: 60  AMNCPHQADGEPCNNC--DICHDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRA 117

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT +  +   +  R         
Sbjct: 118 TYKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQ-RFEFKA 176

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            + + +K  +    K  GL+  +EA   IA R+ G  R A  +L +              
Sbjct: 177 IKTKAIKEHLADILKKEGLSFDEEALSLIARRAEGGMRDALSILDQALSLTNDNDVSLEI 236

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIAR 273
            E    ++   A+D+   D L       ++ 
Sbjct: 237 AEEITGSISLRALDQYVADLLAHETQQALSD 267


>gi|189219682|ref|YP_001940323.1| DNA polymerase III, gamma/tau subunit [Methylacidiphilum infernorum
           V4]
 gi|189186540|gb|ACD83725.1| DNA polymerase III, gamma/tau subunit [Methylacidiphilum infernorum
           V4]
          Length = 618

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 47/257 (18%), Positives = 74/257 (28%), Gaps = 53/257 (20%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
              RPR   E  GQ      LK  I   +         LF GP G GKTTLA+++A+ L 
Sbjct: 21  RKYRPRVFSEVVGQEHVVRTLKNAIRLGRVAHAY----LFSGPRGTGKTTLARILAKSLN 76

Query: 80  V------------------------NFRSTSGPVIAKAGDLAALLTNLE------DRDVL 109
                                    +     G        +  L    +         + 
Sbjct: 77  CADGPNADFDPDDPICLDIDAGRSLDCIEIDGASNNGVDQVRELREAAKSLPVQSRYKIY 136

Query: 110 FIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
            IDE+H L+      L   +E+                    +    I ATT    +   
Sbjct: 137 IIDEVHMLTQAAFNALLKILEE------------------PPAHVKFIFATTEPYKIPPT 178

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           +  R              +   +Q+      +    +A   IA  S G  R A   L ++
Sbjct: 179 VSSRCQ-RFHFKRIPRRLIADHLQKICIQEKIDAERKALEMIADISEGALRDAEVALDQL 237

Query: 230 RDFAEVAHAKTITREIA 246
             F      ++  +E+ 
Sbjct: 238 ISFYGEKIDQSSVQEMF 254


>gi|24379964|ref|NP_721919.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
           UA159]
 gi|24377948|gb|AAN59225.1|AE014989_6 DNA polymerase III, gamma/tau subunit [Streptococcus mutans UA159]
          Length = 558

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 55/271 (20%), Positives = 98/271 (36%), Gaps = 21/271 (7%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     R +T +E  GQ      LK  + A+K  + A    LF GP G GKT+ A++ A+
Sbjct: 4   ALYRKYRSQTFDEMVGQEVVAKTLKQAV-ASKKISHAY---LFSGPRGTGKTSAAKIFAK 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +    ++   P      D+   +TN    DV+ ID      +  +  I ++  Y     
Sbjct: 60  AMNCPHQADGEPCNNC--DICHDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRA 117

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT +  +   +  R         
Sbjct: 118 TYKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQ-RFEFKA 176

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            + + +K  +    K  GL+  +EA   IA R+ G  R A  +L +              
Sbjct: 177 IKTKAIKEHLADILKKEGLSFDEEALSLIARRAEGGMRDALSILDQALSLTNDNDVSLEI 236

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIAR 273
            E    ++   A+D+   D L       ++ 
Sbjct: 237 AEEITGSISLRALDQYVADLLAHETQQALSD 267


>gi|58580687|ref|YP_199703.1| DNA polymerase III subunits gamma and tau [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|84622621|ref|YP_449993.1| DNA polymerase III subunits gamma and tau [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|188578335|ref|YP_001915264.1| DNA polymerase III subunits gamma and tau [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|58425281|gb|AAW74318.1| DNA polymerase III tau and gamma subunits [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|84366561|dbj|BAE67719.1| DNA polymerase III tau and gamma subunits [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|188522787|gb|ACD60732.1| DNA polymerase III subunit gamma/tau [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 698

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/244 (17%), Positives = 75/244 (30%), Gaps = 53/244 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+   E  GQ      L   +++ +         LF G  G+GKTT+A++ A+ L    
Sbjct: 11  RPKRFAELVGQEHVVRALSNALDSGRVHHA----FLFTGTRGVGKTTIARIFAKSLNCET 66

Query: 83  ------------------------RSTSGPVIAKAGDLAALLTNLE------DRDVLFID 112
                                               D+  ++ N +         V  ID
Sbjct: 67  GTSADPCGQCPACLDIDAGRYIDLLEIDAASNTGVDDVREVIENAQYMPSRGKFKVYLID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS      L   +E+                         + ATT    L   +  
Sbjct: 127 EVHMLSKAAFNALLKTLEE------------------PPEHVKFLLATTDPQKLPVTVLS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R  +   L   + + ++  + R      +     A  +++  + G+ R    LL +   +
Sbjct: 169 RC-LQFNLKRLDEDQIQGQMTRILAAEQIESDLSAIVQLSKAADGSLRDGLSLLDQAIAY 227

Query: 233 AEVA 236
           A  A
Sbjct: 228 AGGA 231


>gi|327390218|gb|EGE88561.1| DNA polymerase III, subunits gamma and tau [Streptococcus
           pneumoniae GA04375]
          Length = 551

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 53/296 (17%), Positives = 90/296 (30%), Gaps = 58/296 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     R +   +  GQ      LK  +E      E + H  LF GP G GKT++A++ A
Sbjct: 4   ALYRKYRSQNFSQLVGQEVVAKTLKQAVE-----QEKISHAYLFSGPRGTGKTSVAKIFA 58

Query: 76  RELGVNFRS------------------------TSGPVIAKAGDLAALLTN------LED 105
           + +    +                                   ++  +         L  
Sbjct: 59  KAMNCPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLAR 118

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
             V  IDE+H LS      L   +E+                         I ATT +  
Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPT------------------QNVVFILATTELHK 160

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           +   +  R       +    + +K  +    +   ++   EA   IA R+ G  R A  +
Sbjct: 161 IPATILSRVQRFEFKSIKTQD-IKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSI 219

Query: 226 LRRVRDFAEVAHAKTITREIADAALLRLAIDKM--GFDQLDL-RYLTMIARNFGGG 278
           L +     +     T   E     +   A+D       Q D+ + L+ +   F  G
Sbjct: 220 LDQALSLTQGNELTTAISEEITGTISLSALDDYVAALSQQDVPKALSCLNLLFDNG 275


>gi|326481689|gb|EGE05699.1| replication factor C subunit 4 [Trichophyton equinum CBS 127.97]
          Length = 352

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 46/240 (19%), Positives = 81/240 (33%), Gaps = 38/240 (15%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           + R  L    V+ E   +   RP  L++  G  E    LK+      AR   + HV+  G
Sbjct: 14  IARADLSGAPVNYELPWVEKYRPIFLDDVVGNTETIERLKII-----ARDGNMPHVIISG 68

Query: 62  PPGLGKTTLAQVVAR-----ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDV-------- 108
            PG+GKTT    +AR              +         +   +     + V        
Sbjct: 69  MPGIGKTTSILCLARQLLGDTYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRHK 128

Query: 109 -LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
            + +DE   ++   ++ L   ME F                   +RF    A  +   + 
Sbjct: 129 LVILDEADSMTSGAQQALRRTMEIFSTT----------------TRFAF--ACNQSNKII 170

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
            PLQ R  I       + + +K ++Q   +   +  +D+    +   + G  R A   L+
Sbjct: 171 EPLQSRCAILRYSRLTDAQVVKRLMQ-ICEAEKVKYSDDGIAALVFSAEGDMRQAINNLQ 229


>gi|327297458|ref|XP_003233423.1| DNA replication factor C subunit [Trichophyton rubrum CBS 118892]
 gi|326464729|gb|EGD90182.1| DNA replication factor C subunit [Trichophyton rubrum CBS 118892]
          Length = 352

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 46/240 (19%), Positives = 81/240 (33%), Gaps = 38/240 (15%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           + R  L    V+ E   +   RP  L++  G  E    LK+      AR   + HV+  G
Sbjct: 14  IARADLSGAPVNYELPWVEKYRPIFLDDVVGNTETIERLKII-----ARDGNMPHVIISG 68

Query: 62  PPGLGKTTLAQVVAR-----ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDV-------- 108
            PG+GKTT    +AR              +         +   +     + V        
Sbjct: 69  MPGIGKTTSILCLARQLLGDTYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRHK 128

Query: 109 -LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
            + +DE   ++   ++ L   ME F                   +RF    A  +   + 
Sbjct: 129 LVILDEADSMTSGAQQALRRTMEIFSTT----------------TRFAF--ACNQSNKII 170

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
            PLQ R  I       + + +K ++Q   +   +  +D+    +   + G  R A   L+
Sbjct: 171 EPLQSRCAILRYSRLTDAQVVKRLMQ-ICEAEKVKYSDDGIAALVFSAEGDMRQAINNLQ 229


>gi|315044711|ref|XP_003171731.1| replication factor C subunit 4 [Arthroderma gypseum CBS 118893]
 gi|311344074|gb|EFR03277.1| replication factor C subunit 4 [Arthroderma gypseum CBS 118893]
          Length = 354

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 46/240 (19%), Positives = 81/240 (33%), Gaps = 38/240 (15%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           + R  L    V+ E   +   RP  L++  G  E    LK+      AR   + HV+  G
Sbjct: 14  IARADLSGAPVNYELPWVEKYRPIFLDDVVGNTETIERLKII-----ARDGNMPHVIISG 68

Query: 62  PPGLGKTTLAQVVAR-----ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDV-------- 108
            PG+GKTT    +AR              +         +   +     + V        
Sbjct: 69  MPGIGKTTSILCLARQLLGDTYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRHK 128

Query: 109 -LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
            + +DE   ++   ++ L   ME F                   +RF    A  +   + 
Sbjct: 129 LVILDEADSMTSGAQQALRRTMEIFSTT----------------TRFAF--ACNQSNKII 170

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
            PLQ R  I       + + +K ++Q   +   +  +D+    +   + G  R A   L+
Sbjct: 171 EPLQSRCAILRYSRLTDAQVVKRLMQ-ICEAEKVKYSDDGIAALVFSAEGDMRQAINNLQ 229


>gi|323340130|ref|ZP_08080394.1| DNA polymerase III, gamma/tau subunit DnaX [Lactobacillus ruminis
           ATCC 25644]
 gi|323092321|gb|EFZ34929.1| DNA polymerase III, gamma/tau subunit DnaX [Lactobacillus ruminis
           ATCC 25644]
          Length = 577

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 60/295 (20%), Positives = 109/295 (36%), Gaps = 36/295 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T E+  GQ      LK     A A  +     LF GP G GKT+ A++ A+ L    
Sbjct: 11  RPQTFEDLVGQDMITKTLK----NALATKQTTHAYLFAGPRGTGKTSCAKLFAKALNCPN 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
           +    P      +    +T     DV+ ID      +  +  I +++ Y   +      +
Sbjct: 67  QVNGDPCNEC--ETCKAITAGRLNDVIEIDAASNNGVEEIRDIRDKVKYAPTQADYKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++   +    I ATT    +   +  R              +
Sbjct: 125 IDEVHMLSTSAFNALLKTLEEPPANVVFILATTDPHKIPATIISRTQ-RFDFKRITSGAI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              ++   K       ++A   IA  + G  R A  +L +V  F        +T + A  
Sbjct: 184 LERMEYILKQKQFEYDEQALNVIARAAEGGMRDALSILDQVLSF----GDNKVTLDNALL 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDA---IEDLI 300
               +  + +      ++YL+ +  +      G++TI A L E +D+   +EDLI
Sbjct: 240 VTGSVTRENL------IKYLSQVQNH--ETVAGLQTIHAILDEGKDSKRLLEDLI 286


>gi|308485377|ref|XP_003104887.1| CRE-RFC-2 protein [Caenorhabditis remanei]
 gi|308257208|gb|EFP01161.1| CRE-RFC-2 protein [Caenorhabditis remanei]
          Length = 329

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 53/301 (17%), Positives = 100/301 (33%), Gaps = 61/301 (20%)

Query: 8   LSRNVSQEDAD-ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           +S+++  E A  +   RP+ L +  G     S L+V      A+   + +++  GPPG+G
Sbjct: 1   MSKHLKHELAPWVEKYRPQVLSDIVGNENMVSRLEVI-----AKEGNVPNIILSGPPGIG 55

Query: 67  KTTLAQVVARE-----LGVNFRSTSGPVIAKAGDLAALLTNL---------EDRDVLFID 112
           KTT    +ARE     +       +         +   +                ++ +D
Sbjct: 56  KTTSVWALARELLGDKVKEAVLELNASDERGIDVVRNRIKTFAQTKVTLPEGRHKIIILD 115

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E   ++   ++ L   ME +                   +RF    A  +   +  P+Q 
Sbjct: 116 EADSMTDGAQQALRRTMELYSKT----------------TRF--ALACNQSEKIIEPIQS 157

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR-RVRD 231
           R  +        +E L   V+  AK   +   D     I   ++G  R A   L+  V  
Sbjct: 158 RCALLRYTKLSPVELLYR-VKEVAKAESVNYDDGGLEAILFTAQGDMRQALNNLQATVNA 216

Query: 232 FAEVAHAKT-------------------ITREIADAALLRLAIDKMGFDQLDLRYLTMIA 272
           +  V                          ++  +AA +     ++GF   D   L+ + 
Sbjct: 217 YERVNKENVLKVCDEPHPDLMIKMLLYCTEKKFFEAAKIIHEFHRLGFSSDD--ILSTLF 274

Query: 273 R 273
           R
Sbjct: 275 R 275


>gi|242238465|ref|YP_002986646.1| DNA polymerase III subunits gamma and tau [Dickeya dadantii Ech703]
 gi|242130522|gb|ACS84824.1| DNA polymerase III, subunits gamma and tau [Dickeya dadantii
           Ech703]
          Length = 664

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 59/307 (19%), Positives = 110/307 (35%), Gaps = 33/307 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T  +  GQ    + L     A     E + H  LF G  G+GKTT+A+++A+  G+N
Sbjct: 11  RPQTFADVVGQEHVLTAL-----ANGLSMERIHHAYLFSGTRGVGKTTIARLLAK--GLN 63

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLD 135
                        D    +      D++ ID   R  +     L       PA   F++ 
Sbjct: 64  CEQGVTATPCGQCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123

Query: 136 LM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           L+               ++++        + ATT    L   +  R  +   L   + E 
Sbjct: 124 LIDEVHMLSRHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSRC-LQFHLKALDPEA 182

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           ++  +Q   +   +AV   A   +A  + G+ R A  L     D A      +++  +  
Sbjct: 183 IRQHLQHVLQEEHVAVEPRALQLLARAADGSLRDALSL----TDQAIAMGQGSVSATVVS 238

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
             L  L       D+  L  L  + +  G   + +   +A      +A+   ++  + + 
Sbjct: 239 HMLGTLD------DEQPLSLLEAVVKADGEQVMALLEQAAARGMDWEALLVEMQTLLHRI 292

Query: 308 GFIQRTP 314
             +Q  P
Sbjct: 293 AMLQLLP 299


>gi|226944093|ref|YP_002799166.1| DNA polymerase III subunits gamma and tau [Azotobacter vinelandii
           DJ]
 gi|226719020|gb|ACO78191.1| DNA-directed DNA polymerase III, gamma and tau subunits
           [Azotobacter vinelandii DJ]
          Length = 694

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 66/315 (20%), Positives = 98/315 (31%), Gaps = 69/315 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPR+  E  GQ      LK  I A    ++ L H  LF G  G+GKTT+A+++A+ L   
Sbjct: 11  RPRSFREMVGQTHV---LKALINA--LDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNCE 65

Query: 82  FRSTSGP------------------------VIAKAGDLAALLTNLE------DRDVLFI 111
              +S P                           K  D   LL N++         V  I
Sbjct: 66  TGISSSPCGQCSVCREIDEGRFVDLIEVDAASRTKVEDTRELLDNVQYAPTRGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSSHSFNALLKTLEE------------------PPPHVKFLLATTDPQKLPVTIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L     E +   +       G+    +A   +   + G+ R A  L     D
Sbjct: 168 SRC-LQFALKSMPPERVVEHLSHVLAAEGIPFETDALWLLGRAADGSMRDAMSL----TD 222

Query: 232 FAEVAHAKTITREIADAALLRLAIDK-MG-----FDQLDLRYLTMIARNFGGGPVGIETI 285
            A       +      A L  L   +  G      +      L  + +    GP      
Sbjct: 223 QAIAFGEGRVLAADVRAMLGALDHGQVYGVLQALLEGDARALLEAVRQLAEQGPDW---- 278

Query: 286 SAGLSEPRDAIEDLI 300
           SA LSE    +  + 
Sbjct: 279 SAVLSEMLGVLHRVA 293


>gi|213402449|ref|XP_002171997.1| DNA replication factor C complex subunit Rfc4 [Schizosaccharomyces
           japonicus yFS275]
 gi|212000044|gb|EEB05704.1| DNA replication factor C complex subunit Rfc4 [Schizosaccharomyces
           japonicus yFS275]
          Length = 344

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 58/275 (21%), Positives = 95/275 (34%), Gaps = 42/275 (15%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   +   RP  L++  G  +  + LKV      AR   + H++  G PG+GKTT    +
Sbjct: 22  ELPWVEKYRPVVLDDIVGNEDTIARLKVI-----ARDGNMPHMIISGMPGIGKTTSVLCL 76

Query: 75  AR------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIHRLSII 120
           A             EL  +       V  K    A    NL      ++ +DE   ++  
Sbjct: 77  AHQLLGSAYREGVLELNASDERGIDVVRNKIKGFAQKKVNLPPGRHKIVILDEADSMTAG 136

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            ++ L   ME +                 N +RF    A  +   +  P+Q R  I +R 
Sbjct: 137 AQQALRRTMEIYS----------------NTTRF--ALACNQSNKIIEPIQSRCAI-LRY 177

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA-GRLLRRVRDFAEVAHA- 238
           +    + ++  +    K   +++TD+    + M + G  R A   L   V  F  V    
Sbjct: 178 SRLNEQQIQKRLSEICKAESVSITDDGMAALIMTAEGDMRQAINNLQSTVAGFDLVNSEN 237

Query: 239 --KTITREIADAALLRLAIDKMGFDQLDLRYLTMI 271
             K   +    A L  +     G     L  L  I
Sbjct: 238 VFKVADQPSPVAVLDMIRHCMHGDIDKALERLKGI 272


>gi|46199890|ref|YP_005557.1| DNA polymerase III holoenzyme tau subunit [Thermus thermophilus
           HB27]
 gi|46197517|gb|AAS81930.1| DNA polymerase III holoenzyme tau subunit [Thermus thermophilus
           HB27]
          Length = 529

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 49/240 (20%), Positives = 72/240 (30%), Gaps = 51/240 (21%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T +E  GQ      L   I   +         LF GP G+GKTT A+++A 
Sbjct: 3   ALYRRFRPLTFQEVVGQEHVKEPLLKAIREGRLAQAY----LFSGPRGVGKTTTARLLAM 58

Query: 77  ELGVN----------------------FRSTSGPVIAKAGDLAALLTNLE------DRDV 108
            +G                                     D+  L   +        R V
Sbjct: 59  AVGCQGEDPPCGVCPHCQAVQRGAHPDVVEIDAASNNSVEDVRELRERIHLAPLSAPRKV 118

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
             +DE H LS      L   +E+                         + ATT    +  
Sbjct: 119 FILDEAHMLSKSAFNALLKTLEE------------------PPPHVLFVFATTEPERMPP 160

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            +  R     R      E++   ++R  +  G    +EA   +A  + G  R A  LL R
Sbjct: 161 TILSRTQ-HFRFRRLTEEEIAFKLRRILEAVGREAEEEALLLLARLADGALRDAESLLER 219


>gi|55981921|ref|YP_145218.1| DNA polymerase III holoenzyme subunit tau [Thermus thermophilus
           HB8]
 gi|55773334|dbj|BAD71775.1| DNA polymerase III holoenzyme tau subunit [Thermus thermophilus
           HB8]
          Length = 529

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 49/240 (20%), Positives = 72/240 (30%), Gaps = 51/240 (21%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T +E  GQ      L   I   +         LF GP G+GKTT A+++A 
Sbjct: 3   ALYRRFRPLTFQEVVGQEHVKEPLLKAIREGRLAQAY----LFSGPRGVGKTTTARLLAM 58

Query: 77  ELGVN----------------------FRSTSGPVIAKAGDLAALLTNLE------DRDV 108
            +G                                     D+  L   +        R V
Sbjct: 59  AVGCQGEDPPCGVCPHCQAVQRGAHPDVVEIDAASNNSVEDVRELRERIHLAPLSAPRKV 118

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
             +DE H LS      L   +E+                         + ATT    +  
Sbjct: 119 FILDEAHMLSKSAFNALLKTLEE------------------PPPHVLFVFATTEPERMPP 160

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            +  R     R      E++   ++R  +  G    +EA   +A  + G  R A  LL R
Sbjct: 161 TILSRTQ-HFRFRRLTEEEIAFKLRRILEAVGREAEEEALLLLARLADGALRDAESLLER 219


>gi|325128498|gb|EGC51376.1| DNA polymerase III, subunits gamma and tau [Neisseria meningitidis
           N1568]
          Length = 709

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 49/303 (16%), Positives = 90/303 (29%), Gaps = 63/303 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T  +  GQ      L+  ++  +     L H  L  G  G+GKTT+A+++A+ L   
Sbjct: 11  RPKTFSDLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCE 65

Query: 82  FRS------------------------TSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                                ++  +L N +         V  I
Sbjct: 66  NAQHGEPCGVCESCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYII 125

Query: 112 DEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+H LS      +   +E+    +  ++      +     LSR                
Sbjct: 126 DEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNM------- 178

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
                           + +   +        +A    A   +   + G+ R A  LL + 
Sbjct: 179 --------------TAQQVADHLAHVLDSEKIAYAPPALQLLGRAAAGSMRDALSLLDQA 224

Query: 230 RDFAEVAHAKTITREIADAALLRLAIDKM-GFDQLDLRYLTMIARNFGGGPVGIETISAG 288
                 + A+   R++  A   +   + + G    D   L   A+      VG +     
Sbjct: 225 IAMGSGSVAEQDVRQMIGAVDKQYLYELLTGIVNQDGEALLAKAQEMAAYAVGFDN---A 281

Query: 289 LSE 291
           L E
Sbjct: 282 LGE 284


>gi|299146823|ref|ZP_07039891.1| DNA polymerase III, gamma and tau subunits [Bacteroides sp. 3_1_23]
 gi|298517314|gb|EFI41195.1| DNA polymerase III, gamma and tau subunits [Bacteroides sp. 3_1_23]
          Length = 621

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 76/228 (33%), Gaps = 20/228 (8%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T E   GQ    + LK  I   K         LF GP G+GKTT A++ A+ +
Sbjct: 8   ARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAY----LFCGPRGVGKTTCARIFAKTI 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL-----YPAMEDFQ 133
                +  G    +     A        ++  +D     S+     L      P      
Sbjct: 64  NCMTPTADGEACNQCESCVA-FNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKY 122

Query: 134 LDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
              ++ E             ++++        I ATT    +   +  R  I    N   
Sbjct: 123 KVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQI-YDFNRIS 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           +ED    +   A   G+    EA   IAM++ G  R A  +  +V  F
Sbjct: 182 VEDTVNHLSYVASKEGITAEPEALNVIAMKADGGMRDALSIFDQVVSF 229


>gi|291407082|ref|XP_002719834.1| PREDICTED: replication factor C 5 [Oryctolagus cuniculus]
          Length = 342

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 74/223 (33%), Gaps = 38/223 (17%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75
           +   RP+TL +     +  S ++ FI       + L H+L  GPPG GKT+     A   
Sbjct: 25  VEKYRPQTLNDLISHRDILSTIQKFIS-----EDRLPHLLLYGPPGTGKTSTILACAKQL 79

Query: 76  ---RELGVNFRSTSGPVIAKAGDLAA-LLTNLEDRDVL-------FIDEIHRLSIIVEEI 124
              +E G      +         +   +L+    R +         +DE   ++   +  
Sbjct: 80  YKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNA 139

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           L   +E F       E      +   LS+                LQ R     R     
Sbjct: 140 LRRVIEKF------TENTRFCLICNYLSKIIP------------ALQSRC-TRFRFGPLT 180

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
            E +   ++   +   + V+++    +   S G  R A  +L+
Sbjct: 181 PELMVPRLEHVVEEEKVYVSEDGMKALITLSSGDMRRALNILQ 223


>gi|15893891|ref|NP_347240.1| ATP-dependent zinc metallopeptidase FtsH (cell dividion protein)
           [Clostridium acetobutylicum ATCC 824]
 gi|15023472|gb|AAK78580.1|AE007575_4 ATP-dependent zinc metallopeptidase FtsH (cell dividion protein)
           [Clostridium acetobutylicum ATCC 824]
 gi|325508018|gb|ADZ19654.1| ATP-dependent zinc metallopeptidase FtsH (cell dividion protein)
           [Clostridium acetobutylicum EA 2018]
          Length = 621

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 60/258 (23%), Positives = 103/258 (39%), Gaps = 23/258 (8%)

Query: 25  RTLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +T E+  GQ EA  +L   +       + A+  A+     L VGPPG GKT LA+ VA E
Sbjct: 162 KTFEDVAGQEEAKESLVEIVDFLHNPNKYAEIGAKLPKGALLVGPPGTGKTLLAKAVAGE 221

Query: 78  LGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
             V F S SG       V   A  +  L    +++   ++FIDEI  +    E  L  + 
Sbjct: 222 AKVPFFSMSGSDFVEMFVGMGAARVRDLFEQAQEKAPCIIFIDEIDAIGKSRENTLGGSN 281

Query: 130 EDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           ++ +  L  ++ E     S K       ++AAT R  +L   L    RF   + ++  ++
Sbjct: 282 DEREQTLNQLLAEMDGFDSSKG----VVILAATNRPEILDKALLRPGRFDRRVIVDRPDL 337

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           +  + I++  AK   ++            S         ++      A       + +E 
Sbjct: 338 KGREAILKVHAKDVKMSEDISLEEIAKATSGAVGADLANIVNEAALLAVKNGRNKVYQED 397

Query: 246 ADAALLRLAIDKMGFDQL 263
            D A+  +   K   D++
Sbjct: 398 LDKAVEFIIAGKEKKDKI 415


>gi|325918000|ref|ZP_08180164.1| DNA polymerase III, subunit gamma/tau [Xanthomonas vesicatoria ATCC
           35937]
 gi|325535764|gb|EGD07596.1| DNA polymerase III, subunit gamma/tau [Xanthomonas vesicatoria ATCC
           35937]
          Length = 399

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/244 (17%), Positives = 75/244 (30%), Gaps = 53/244 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+   E  GQ      L   +++ +         LF G  G+GKTT+A++ A+ L    
Sbjct: 11  RPKRFAELVGQEHVVRALTNALDSGRVHHA----FLFTGTRGVGKTTIARIFAKSLNCET 66

Query: 83  ------------------------RSTSGPVIAKAGDLAALLTNLE------DRDVLFID 112
                                               D+  ++ N +         V  ID
Sbjct: 67  GTSADPCGTCPACLDIDAGRYIDLLEIDAASNTGVDDVREVIENAQYMPSRGKFKVYLID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS      L   +E+                         + ATT    L   +  
Sbjct: 127 EVHMLSKAAFNALLKTLEE------------------PPEHVKFLLATTDPQKLPVTVLS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R  +   L   + + ++  + R      +     A  +++  + G+ R    LL +   +
Sbjct: 169 RC-LQFNLKRLDEDQIQGQMTRILTAEDIESDPSAIVQLSKAADGSLRDGLSLLDQAIAY 227

Query: 233 AEVA 236
           A  A
Sbjct: 228 AGGA 231


>gi|87123287|ref|ZP_01079138.1| DNA polymerase, gamma and tau subunits [Synechococcus sp. RS9917]
 gi|86169007|gb|EAQ70263.1| DNA polymerase, gamma and tau subunits [Synechococcus sp. RS9917]
          Length = 597

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 86/221 (38%), Gaps = 19/221 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  ++  GQ    + L   + + +         LF GP G GKT+ A+++AR L    
Sbjct: 13  RPQRFDQLVGQDVIAATLSHALRSDRIA----PAYLFSGPRGTGKTSSARILARSLNCLS 68

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
             T  P      +L   ++     DV+ ID      +  +  ++E   +  ++      +
Sbjct: 69  SDTPTPEPCGTCELCTTISAGTALDVIEIDAASNTGVDNIRDLIERSRFAPVQARWKVYV 128

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           V E             ++++    R   + ATT    +   +  R           +E L
Sbjct: 129 VDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTILSRCQ-RFDFRRIPLEAL 187

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           +  ++  A+   + +  EA   +A R++G  R A  LL ++
Sbjct: 188 EAHLRWIAEQEAIGIEPEALHVVAQRAQGGLRDAESLLDQL 228


>gi|330470589|ref|YP_004408332.1| DNA polymerase III subunits gamma and tau [Verrucosispora maris
           AB-18-032]
 gi|328813560|gb|AEB47732.1| DNA polymerase III, subunits gamma and tau [Verrucosispora maris
           AB-18-032]
          Length = 966

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 52/265 (19%), Positives = 89/265 (33%), Gaps = 32/265 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RPRT  E  GQ      L   + + +         LF GP G GKT+ A+++AR
Sbjct: 4   ALYRKYRPRTFAEVIGQEHVTEPLSQALRSGRLNHAY----LFSGPRGCGKTSSARILAR 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR----DVLFID-----EIHRLSIIVEEILYP 127
            L        GP     G  A+  +   D     DV+ ID      +     + E+  + 
Sbjct: 60  SLNCEH----GPTPEPCGVCASCRSLGSDGAGSIDVIEIDAASHGGVDDARELREKAFFA 115

Query: 128 AMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
                    ++ E             + V+        I ATT    +   ++ R     
Sbjct: 116 PASSRFKIYVIDEAHMVSSAGFNALLKLVEEPPEYVKFIFATTEPEKVLGTIKSR-THHY 174

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
                  + L+  +++  +  G+ V       +     G+ R +  +L ++     +A A
Sbjct: 175 PFRLIPPKVLRPYLEQLCQAEGVEVEPAVFPLVVRAGGGSARDSLSVLDQL-----IAGA 229

Query: 239 KTITREIADAALLRLAIDKMGFDQL 263
                  A AA L    D    D++
Sbjct: 230 GPDGVTYARAAALLGVTDAALIDEM 254


>gi|145592779|ref|YP_001157076.1| DNA polymerase III, subunits gamma and tau [Salinispora tropica
           CNB-440]
 gi|145302116|gb|ABP52698.1| DNA polymerase III, subunits gamma and tau [Salinispora tropica
           CNB-440]
          Length = 808

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 52/265 (19%), Positives = 88/265 (33%), Gaps = 32/265 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RPRT  E  GQ      L   +   +         LF GP G GKT+ A+++AR
Sbjct: 4   ALYRKYRPRTFAEVIGQEHVTEPLSQALRGGRLNHAY----LFSGPRGCGKTSSARILAR 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR----DVLFID-----EIHRLSIIVEEILYP 127
            L        GP     G  A+      D     DV+ ID      +     + E+  + 
Sbjct: 60  SLNCEH----GPTPEPCGTCASCRALATDGAGSIDVIEIDAASHGGVDDARELREKAFFA 115

Query: 128 AMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
             +      ++ E             + V+        I ATT    +   ++ R     
Sbjct: 116 PAQSRFKIYVIDEAHMVSSAGFNALLKLVEEPPEYVKFIFATTEPEKVLGTIKSR-THHY 174

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
                  + L+  +++  +  G+ V       +     G+ R +  +L ++     +A A
Sbjct: 175 PFRLIPPKVLRPYLEQLCQAEGVQVEPAVFPLVVRAGGGSARDSLSVLDQL-----IAGA 229

Query: 239 KTITREIADAALLRLAIDKMGFDQL 263
                  A AA L    D    D++
Sbjct: 230 GPEGVIYARAAALLGVTDSALIDEM 254


>gi|2583049|gb|AAB82595.1| DNA polymerase III holoenzyme tau subunit [Thermus thermophilus]
          Length = 529

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 49/240 (20%), Positives = 72/240 (30%), Gaps = 51/240 (21%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T +E  GQ      L   I   +         LF GP G+GKTT A+++A 
Sbjct: 3   ALYRRFRPLTFQEVVGQEHVKEPLLKAIREGRLAQAY----LFSGPRGVGKTTTARLLAM 58

Query: 77  ELGVN----------------------FRSTSGPVIAKAGDLAALLTNLE------DRDV 108
            +G                                     D+  L   +        R V
Sbjct: 59  AVGCQGEDPPCGVCPHCQAVQRGAHPDVVEIDAASNNSVEDVRELRERIHLAPLSAPRKV 118

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
             +DE H LS      L   +E+                         + ATT    +  
Sbjct: 119 FILDEAHMLSKSAFNALLKTLEE------------------PPPHVLFVFATTEPERMPP 160

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            +  R     R      E++   ++R  +  G    +EA   +A  + G  R A  LL R
Sbjct: 161 TILSRTQ-HFRFRRLTEEEIAFKLRRILEAVGREAEEEALLLLARLADGALRDAESLLER 219


>gi|304312973|ref|YP_003812571.1| DNA polymerase III (subunits tau and gamma) [gamma proteobacterium
           HdN1]
 gi|301798706|emb|CBL46939.1| DNA polymerase III (subunits tau and gamma) [gamma proteobacterium
           HdN1]
          Length = 669

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 65/310 (20%), Positives = 98/310 (31%), Gaps = 65/310 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPR+  E  GQ      L+  I A   +   L H  LF G  G+GKTT+A+++A+ L   
Sbjct: 11  RPRSFSEMVGQEHV---LRAMINALDQQ--RLHHAYLFTGTRGVGKTTIARILAKSLNCE 65

Query: 82  FRSTS------------------------GPVIAKAGDLAALLTNLE------DRDVLFI 111
              TS                             K  D   LL N++         V  I
Sbjct: 66  KGVTSQPCGTCSACREIDEGRFVDLIEVDAASRTKVEDTRELLENVQYTPTRGRYKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSGHSFNALLKTLEE------------------PPEHVKFLLATTDPQKLPITIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R            E +   +++      +   + A   +A  ++G+ R A  L     D
Sbjct: 168 SRCLQFSLKAML-PERIVQHLKKVLAAEQVDFEEPALWALARGAQGSMRDAMSL----TD 222

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
            A       IT +   A L  +  D +       R L  +     GG   + ++   L  
Sbjct: 223 QAIAFGNGKITEQEVAAMLGTVDRDWV------WRILEPLVSRDEGGRQDVASLFQALQA 276

Query: 292 PRDAIEDLIE 301
             D   D  E
Sbjct: 277 LADHAPDYSE 286


>gi|332886083|gb|EGK06327.1| hypothetical protein HMPREF9456_00201 [Dysgonomonas mossii DSM
           22836]
          Length = 587

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 76/245 (31%), Gaps = 54/245 (22%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T     GQ    + LK  I + K         LF GP G+GKTT A++ A+ +
Sbjct: 8   ARKYRPMTFNSVVGQRALTTTLKNAIMSGKLAHAY----LFCGPRGVGKTTCARIFAKTI 63

Query: 79  GV-------------------------NFRSTSGPVIAKAGDLAALLT------NLEDRD 107
                                      N             D+ +L+        +    
Sbjct: 64  NCLSPTPDGETCNQCESCVAFNEQRSFNIHELDAASNNSVDDIRSLIEQVRIPPQIGKYK 123

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           V  IDE+H LS          +E+          P   ++ I         ATT    + 
Sbjct: 124 VYIIDEVHMLSQAAFNAFLKTLEE----------PPHHAIFIL--------ATTEKHKIL 165

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             +  R  I        I+D    +Q  A    +    EA   +A ++ G  R A  +  
Sbjct: 166 PTILSRCQIYDFSRI-TIKDTVEHLQYVADQEHVKAEPEALNVLAQKADGGMRDALSIFD 224

Query: 228 RVRDF 232
           +V  F
Sbjct: 225 QVVSF 229


>gi|260173527|ref|ZP_05759939.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. D2]
 gi|315921797|ref|ZP_07918037.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. D2]
 gi|313695672|gb|EFS32507.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. D2]
          Length = 621

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 76/228 (33%), Gaps = 20/228 (8%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T E   GQ    + LK  I   K         LF GP G+GKTT A++ A+ +
Sbjct: 8   ARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAY----LFCGPRGVGKTTCARIFAKTI 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL-----YPAMEDFQ 133
                +  G    +     A        ++  +D     S+     L      P      
Sbjct: 64  NCMTPTADGEACNQCESCVA-FNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKY 122

Query: 134 LDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
              ++ E             ++++        I ATT    +   +  R  I    N   
Sbjct: 123 KVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQI-YDFNRIS 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           +ED    +   A   G+    EA   IAM++ G  R A  +  +V  F
Sbjct: 182 VEDTVNHLSYVASKEGITAEPEALNVIAMKADGGMRDALSIFDQVVSF 229


>gi|227888769|ref|ZP_04006574.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200]
 gi|227850606|gb|EEJ60692.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200]
          Length = 602

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 80/228 (35%), Gaps = 21/228 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPRT +   GQ      LK  I     R +     LF GP G GKT+ A++ A+ L    
Sbjct: 11  RPRTFDGVVGQTAITDTLKNAI----KRGKISHAFLFAGPRGTGKTSCAKIFAKALNCTN 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P       LAA    +   D++ ID      +  +  I +++ Y   +      +
Sbjct: 67  LQDGEPCNECENCLAADQGTM--NDIIEIDAASNNGVDEIRDIRDKVKYAPTQGKYKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT +  +   +  R          + + +
Sbjct: 125 IDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRIDQHDLI 184

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
              +        +   ++A   IA  + G  R +  +L ++  + +  
Sbjct: 185 AR-MTYILGQEKIDFEEKALEVIAQVADGGMRDSLSILDQILSYDQDK 231


>gi|254474501|ref|ZP_05087887.1| DNA polymerase III, tau subunit [Ruegeria sp. R11]
 gi|214028744|gb|EEB69579.1| DNA polymerase III, tau subunit [Ruegeria sp. R11]
          Length = 607

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 63/318 (19%), Positives = 110/318 (34%), Gaps = 31/318 (9%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M +  G   +   Q        RP T  +  GQ      LK    A +         +  
Sbjct: 1   MNETAGDTGQATGQYQVLARKYRPETFADLVGQDAMVRTLKNAFAADRIAQA----FIMT 56

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTS-GPVIAKAGDLAALLTNLEDR--DVLFIDEIHRL 117
           G  G GKTT A+++A+ +         GP     G        +E R  DV+ +D   R 
Sbjct: 57  GIRGTGKTTTARIIAKGMNCIGEDGQGGPTTDPCGKCEHCTAIMEGRHVDVMEMDAASRT 116

Query: 118 SI-----IVEEILYPAMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRV 163
            +     I++ + Y A        ++ E             ++++   +    I ATT +
Sbjct: 117 GVGDIREIIDSVQYRAASARYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEI 176

Query: 164 GLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAG 223
             +   +  R      L   E E +  +++R A   G  + ++A   I   + G+ R A 
Sbjct: 177 RKVPVTVLSRCQ-RFDLRRIEPEVMIDLLRRIATAEGADIAEDALALITRAAEGSARDAT 235

Query: 224 RLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIE 283
            LL    D A    A   T +   A L      ++  D +D     ++  +       + 
Sbjct: 236 SLL----DQAISHGAGETTADQVRAMLGLADRGRV-LDLMD----MILRGDAAAALTELS 286

Query: 284 TISAGLSEPRDAIEDLIE 301
              A  ++P   + DL E
Sbjct: 287 AQYAEGADPLAVLRDLAE 304


>gi|293372713|ref|ZP_06619095.1| DNA polymerase III, subunit gamma and tau [Bacteroides ovatus SD
           CMC 3f]
 gi|292632522|gb|EFF51118.1| DNA polymerase III, subunit gamma and tau [Bacteroides ovatus SD
           CMC 3f]
          Length = 621

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 76/228 (33%), Gaps = 20/228 (8%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T E   GQ    + LK  I   K         LF GP G+GKTT A++ A+ +
Sbjct: 8   ARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAY----LFCGPRGVGKTTCARIFAKTI 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL-----YPAMEDFQ 133
                +  G    +     A        ++  +D     S+     L      P      
Sbjct: 64  NCMTPTADGEACNQCESCVA-FNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKY 122

Query: 134 LDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
              ++ E             ++++        I ATT    +   +  R  I    N   
Sbjct: 123 KVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQI-YDFNRIS 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           +ED    +   A   G+    EA   IAM++ G  R A  +  +V  F
Sbjct: 182 VEDTVNHLSYVASKEGITAEPEALNVIAMKADGGMRDALSIFDQVVSF 229


>gi|300707470|ref|XP_002995941.1| hypothetical protein NCER_101043 [Nosema ceranae BRL01]
 gi|239605186|gb|EEQ82270.1| hypothetical protein NCER_101043 [Nosema ceranae BRL01]
          Length = 310

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 15/122 (12%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR-- 76
           +   RP++ +E  G  E    LK     A   +  + ++LF GPPG GKTT  ++++   
Sbjct: 6   VEKYRPKSFDEVEGNQEVIVCLK-----AIQESRVIPNMLFYGPPGTGKTTSIRIISNSL 60

Query: 77  ------ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
                 EL  +       V     + A+  +N     ++ +DE+  ++   +  L   ME
Sbjct: 61  PNTSVLELNASDERGISVVRETIKEFASTYSNTIK--LVVLDEVDFMTRDAQNALRRIME 118

Query: 131 DF 132
           DF
Sbjct: 119 DF 120


>gi|160886339|ref|ZP_02067342.1| hypothetical protein BACOVA_04349 [Bacteroides ovatus ATCC 8483]
 gi|237723209|ref|ZP_04553690.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. 2_2_4]
 gi|156108224|gb|EDO09969.1| hypothetical protein BACOVA_04349 [Bacteroides ovatus ATCC 8483]
 gi|229447731|gb|EEO53522.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. 2_2_4]
          Length = 621

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 76/228 (33%), Gaps = 20/228 (8%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T E   GQ    + LK  I   K         LF GP G+GKTT A++ A+ +
Sbjct: 8   ARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAY----LFCGPRGVGKTTCARIFAKTI 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL-----YPAMEDFQ 133
                +  G    +     A        ++  +D     S+     L      P      
Sbjct: 64  NCMTPTADGEACNQCESCVA-FNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKY 122

Query: 134 LDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
              ++ E             ++++        I ATT    +   +  R  I    N   
Sbjct: 123 KVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQI-YDFNRIS 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           +ED    +   A   G+    EA   IAM++ G  R A  +  +V  F
Sbjct: 182 VEDTVNHLSYVASKEGITAEPEALNVIAMKADGGMRDALSIFDQVVSF 229


>gi|218246891|ref|YP_002372262.1| DNA polymerase III subunits gamma and tau [Cyanothece sp. PCC 8801]
 gi|218167369|gb|ACK66106.1| DNA polymerase III, subunits gamma and tau [Cyanothece sp. PCC
           8801]
          Length = 648

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 81/225 (36%), Gaps = 19/225 (8%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +S  +      RP+T  +  GQ    + L   I A +         LF GP G GKT+ A
Sbjct: 1   MSSYEPLHHKYRPQTFADLVGQEAIATTLTNAIAAKRIA----PAYLFTGPRGTGKTSSA 56

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILY 126
           +++A+ L     S          ++   +T     DV+ ID      +  +  I+E   +
Sbjct: 57  RILAKSLNCLAFSDPTATPCGKCEVCRAITRGSALDVIEIDAASNTGVDNIREIIERAQF 116

Query: 127 PAMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             ++      ++ E             ++++    R   + ATT    +   +  R    
Sbjct: 117 APVQCRYKVYVIDECHMLSVAAFNALLKTLEEPPDRVIFVLATTDPQRVLPTIISRCQ-R 175

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
                  +  + + + + A+   + +  +A   +A  + G  R A
Sbjct: 176 FDYRRIPLAAMVSHLGKIAQQETIDIAQDALILVAQIANGGLRDA 220


>gi|228995415|ref|ZP_04155086.1| DNA polymerase III subunit gamma/tau [Bacillus mycoides Rock3-17]
 gi|229003029|ref|ZP_04160887.1| DNA polymerase III subunit gamma/tau [Bacillus mycoides Rock1-4]
 gi|228758229|gb|EEM07416.1| DNA polymerase III subunit gamma/tau [Bacillus mycoides Rock1-4]
 gi|228764341|gb|EEM13217.1| DNA polymerase III subunit gamma/tau [Bacillus mycoides Rock3-17]
          Length = 562

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 52/231 (22%), Positives = 85/231 (36%), Gaps = 31/231 (13%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  E+  GQ      L    + A  + +A    LF GP G GKTT+A+V A+ +    
Sbjct: 11  RPQNFEDVVGQKHVTKTL----QNALLQEKASHAYLFSGPRGTGKTTIAKVFAKTINCEH 66

Query: 83  RSTSGPVIAKAGDLAALL--TNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLD 135
                PV     +  A L  T     DVL ID      +  +  I +++ Y         
Sbjct: 67  ----APVAEPCNECPACLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVRYKV 122

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             ++++        I ATT    +   +  R             
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPQHVIFILATTEPHKIPPTIISRCQRFEFRKI---- 178

Query: 187 DLKTIVQRGAKL---TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
            +  IV+R A +    G  V DEA   +A  + G  R A  L+ +   +++
Sbjct: 179 SVHDIVERLATVVTNEGTKVEDEALQIVARAAEGGMRDALSLIDQAISYSD 229


>gi|242770327|ref|XP_002341956.1| DNA replication factor C subunit Rfc3, putative [Talaromyces
           stipitatus ATCC 10500]
 gi|218725152|gb|EED24569.1| DNA replication factor C subunit Rfc3, putative [Talaromyces
           stipitatus ATCC 10500]
          Length = 399

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 52/316 (16%), Positives = 98/316 (31%), Gaps = 50/316 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP +L+E  G  +  + +  FI++ +     L H+L  GPPG GKTT    +AR
Sbjct: 46  PWVEKYRPNSLDEVQGHQDILATINRFIDSHR-----LPHLLLYGPPGTGKTTTILALAR 100

Query: 77  -------------------ELGVNFRSTSGPVIAKAGDL------AALLTNLEDRDVLFI 111
                              + G++         A    +      AA   +L    ++ +
Sbjct: 101 RIYGIKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSVAAPAAKENSLGAFKLIIL 160

Query: 112 DEIHRLSIIVEEILYPAMEDFQLD--LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE   ++   +  L   ME +  +    +    + +     LSR T    +         
Sbjct: 161 DEADAMTATAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEADIRS 220

Query: 170 LQDRFGIPIRLNFYEIEDLKTIV-------QRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
           L D+      +   + E  +++V       +R   +            +    +  P   
Sbjct: 221 LVDKVIEAENVRI-QPEATESLVRLSKGDMRRALNVLQACHASSIPLPMRNAPKDQPSPE 279

Query: 223 GRLLRRVRDF-AEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVG 281
             L+     +    A   +  REI    L    +            L  I        + 
Sbjct: 280 HELITDATIYNCIAAPHPSDIREIMTTLLSTSDVISC---------LNTINTLKTSKGLA 330

Query: 282 IETISAGLSEPRDAIE 297
           +  I + L E    +E
Sbjct: 331 LADILSALGEQLQTLE 346


>gi|313212534|emb|CBY36498.1| unnamed protein product [Oikopleura dioica]
 gi|313219619|emb|CBY30541.1| unnamed protein product [Oikopleura dioica]
          Length = 329

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 72/226 (31%), Gaps = 38/226 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP  L++     E  S +K FI+      E L H+LF GPPG GKT+    VA+
Sbjct: 9   PWVEKYRPNKLDDLISHTEIISTIKKFID-----NEQLPHLLFYGPPGTGKTSTILAVAK 63

Query: 77  E------LGVNFRSTSGPVIAKAGDLAALLTNL--------EDRDVLFIDEIHRLSIIVE 122
           E      L       +         +   + N         +   V+ +DE   ++   +
Sbjct: 64  ELYGAKNLKKMVLELNASDARGINVVRNEILNFASSRSLHCKGFKVIILDECDAMTRDAQ 123

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             L   ME F                              +G L   +Q R     R   
Sbjct: 124 AALRRVMEKFT------------------KNVRFCLICNYLGKLIPAIQSRC-TRFRFAP 164

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
             +E +   +    +  G+ +       +   + G  R +  +L+ 
Sbjct: 165 LSVEQMMPRINHVVEEEGIDIDQNGMDLLLKMAEGDMRRSLNILQA 210


>gi|283458781|ref|YP_003363423.1| DNA polymerase III, gamma/tau subunits [Rothia mucilaginosa DY-18]
 gi|283134838|dbj|BAI65603.1| DNA polymerase III, gamma/tau subunits [Rothia mucilaginosa DY-18]
          Length = 972

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 60/307 (19%), Positives = 97/307 (31%), Gaps = 40/307 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T  E  GQ      L V +E  +         LF GP G GKTT A+++AR
Sbjct: 30  ALYRRYRPETFAEVIGQEHVTEPLMVALEKNRVNHAY----LFSGPRGCGKTTSARILAR 85

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR--DVLFID-----EIHRLSIIVEEILYPAM 129
              +N      P      D    L+       DV+ +D      +     + E      +
Sbjct: 86  --CLNCAQGPTPTPCGVCDSCRELSRDGGGSLDVIEMDAASHGGVDHARDLRERATLAPV 143

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            D     ++ E             + V+        I ATT    +   ++ R       
Sbjct: 144 RDRYKIFIIDEAHMVTREGFNALLKIVEEPPEHVKFIFATTEPNKVLGTIRSR-THHYPF 202

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
                E L   +Q       +AV       +     G+ R +  +L ++     +A A +
Sbjct: 203 RLVPPEVLLPFLQGLCDQEQVAVEPGVLQLVIRAGGGSVRDSLSILDQL-----MAGASS 257

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV-----GIETISAGLSEPRDA 295
                 D A+  L            + L  +    G          +  + A   +PR  
Sbjct: 258 QNGIEYDRAVALLGY-------THAQLLDEVIEALGAKDAPTLFGAVSRVVATGQDPRRF 310

Query: 296 IEDLIEP 302
           +EDL+E 
Sbjct: 311 VEDLLER 317


>gi|83588901|ref|YP_428910.1| DNA polymerase III, subunits gamma and tau [Moorella thermoacetica
           ATCC 39073]
 gi|83571815|gb|ABC18367.1| DNA polymerase III, subunits gamma and tau [Moorella thermoacetica
           ATCC 39073]
          Length = 589

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 84/221 (38%), Gaps = 21/221 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPRT  E  GQ      L+  +   +     +   LF GP G GKT+ A+++AR +    
Sbjct: 12  RPRTFAEVVGQEHITRTLRNALRTGRL----VHAYLFCGPRGTGKTSTAKILARAINCLA 67

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
               G    +  +   +L      DVL +D      I  +  ++E+I    +E      +
Sbjct: 68  PRE-GEPCNECANCRRILAGNS-LDVLEMDAASNRGIDEIRNLIEKIPLGPVEGRYKVYI 125

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++   +    I ATT    +   +  R       +   ++ +
Sbjct: 126 IDEVHMLTQEAFNALLKTLEEPPAHAVFILATTEPRKVLPTILSRCQ-RFDFHPLTVQAI 184

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
              +Q  A   G+ +   A   ++ ++ G  R A  LL ++
Sbjct: 185 AGRLQEVAAANGVEIEPGALSLLSRKAAGGLRDALSLLDQI 225


>gi|66817990|ref|XP_642688.1| peptidase S16, Lon protease family protein [Dictyostelium
           discoideum AX4]
 gi|74857001|sp|Q550C8|LONM2_DICDI RecName: Full=Lon protease homolog, mitochondrial 2; Flags:
           Precursor
 gi|60470868|gb|EAL68840.1| peptidase S16, Lon protease family protein [Dictyostelium
           discoideum AX4]
          Length = 836

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 53/242 (21%), Positives = 87/242 (35%), Gaps = 37/242 (15%)

Query: 32  GQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           G  +    ++ FI   K R      V L VGPPG GKT++ + +A  LG  F   S   +
Sbjct: 361 GLKDIKEMIQTFIAVGKLRGSIGGKVILLVGPPGTGKTSVGKSIANALGRQFHRISVGGL 420

Query: 91  AKAGDLA------------ALLTNLE----DRDVLFIDEIHRLSIIVE--------EILY 126
           +   ++              ++  L+       V+ IDEI ++S   +        E+L 
Sbjct: 421 SDVSEIKGHRRTYVASMPGKIIQALKTVKTSNPVILIDEIDKISRSSQGDPNSALLEVLD 480

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           P      +D  +        V  +LSR   I        +  PL DR  +     + + E
Sbjct: 481 PQQNKNFVDYYL-------DVPYDLSRVLFICTANDADSIPAPLLDRMEVMTLNGYIQSE 533

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
            +  I +R   L  L   +    E   + + TP    +L       A V + K    +I 
Sbjct: 534 QM-EIAKRY--LLPLVRKETGISE--EQLQFTPEAIKKLCELYCREAGVRNLKKFIDKIF 588

Query: 247 DA 248
             
Sbjct: 589 RK 590


>gi|15900748|ref|NP_345352.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae
           TIGR4]
 gi|111657220|ref|ZP_01407992.1| hypothetical protein SpneT_02001572 [Streptococcus pneumoniae
           TIGR4]
 gi|14972337|gb|AAK74992.1| DNA polymerase III, gamma and tau subunits [Streptococcus
           pneumoniae TIGR4]
          Length = 551

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 53/296 (17%), Positives = 90/296 (30%), Gaps = 58/296 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     R +   +  GQ      LK  +E      E + H  LF GP G GKT++A++ A
Sbjct: 4   ALYRKYRSQNFSQLVGQEVVAKTLKQAVE-----QEKISHAYLFSGPRGTGKTSVAKIFA 58

Query: 76  RELGVNFRS------------------------TSGPVIAKAGDLAALLTN------LED 105
           + +    +                                   ++  +         L  
Sbjct: 59  KAMNCPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLAR 118

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
             V  IDE+H LS      L   +E+                         I ATT +  
Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPT------------------QNVVFILATTELHK 160

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           +   +  R       +    + +K  +    +   ++   EA   IA R+ G  R A  +
Sbjct: 161 IPATILSRVQRFEFKSIKTQD-IKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSI 219

Query: 226 LRRVRDFAEVAHAKTITREIADAALLRLAIDKM--GFDQLDL-RYLTMIARNFGGG 278
           L +     +     T   E     +   A+D       Q D+ + L+ +   F  G
Sbjct: 220 LDQALSLTQGNELTTAISEEITGTISLSALDDYVAALSQQDVPKALSCLNLLFDNG 275


>gi|227891208|ref|ZP_04009013.1| DNA polymerase III subunit gamma/tau [Lactobacillus salivarius ATCC
           11741]
 gi|227867082|gb|EEJ74503.1| DNA polymerase III subunit gamma/tau [Lactobacillus salivarius ATCC
           11741]
          Length = 585

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 77/226 (34%), Gaps = 21/226 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+   +  GQ      LK  I       +     LF GP G GKT+ A++ A+ +   F
Sbjct: 17  RPQRFMDLVGQEMVTKTLKNAI----ITHQTSHAYLFTGPRGTGKTSAAKIFAKAINCRF 72

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P      +    +T     DV+ ID      +  +  I +++ Y   E      +
Sbjct: 73  SKEGEPCNEC--ETCKAITEGRLNDVIEIDAASNNGVEEIRDIRDKVKYAPTEADYKVYI 130

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++   +    I ATT    +   +  R            E +
Sbjct: 131 IDEVHMLSTGAFNALLKTLEEPPANVVFILATTEPHKIPATIISRTQ-RFDFKRITAESI 189

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
              +        +   D+A   IA  + G  R A  LL +V  F +
Sbjct: 190 LQRMIYILDQKNVDYDDKALKVIAKAAEGGMRDALSLLDQVISFGD 235


>gi|153813525|ref|ZP_01966193.1| hypothetical protein RUMOBE_03947 [Ruminococcus obeum ATCC 29174]
 gi|149830396|gb|EDM85488.1| hypothetical protein RUMOBE_03947 [Ruminococcus obeum ATCC 29174]
          Length = 537

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 82/230 (35%), Gaps = 21/230 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP   E+  GQ    + L   I A +         LF G  G GKTT+A+++A+
Sbjct: 5   ALYRKFRPDNFEDVKGQDHIVTTLTNQINANRIGHAY----LFCGTRGTGKTTVAKILAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +         P      ++   +      +V+ ID      +  +  I EE+ Y   E 
Sbjct: 61  AVNCEHPVNGSPCNEC--EMCKAIQAGTSMNVIEIDAASNNGVDNIREIREEVTYRPTEG 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++   S    I ATT    +   +  R       + 
Sbjct: 119 RYKVYIIDEVHMLSTGAFNALLKTLEEPPSYVIFILATTEAHKIPITILSRCQ-RYDFHR 177

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
             I+ +   +    K+ G+   ++A   +A    G+ R A  LL +   F
Sbjct: 178 ISIDTIAARLSELLKVEGVEAEEKAIRYVAKAGDGSMRDALSLLDQCIAF 227


>gi|313668558|ref|YP_004048842.1| DNA polymerase III tau and gamma chains [Neisseria lactamica
           ST-640]
 gi|313006020|emb|CBN87479.1| DNA polymerase III tau and gamma chains [Neisseria lactamica
           020-06]
          Length = 710

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 50/303 (16%), Positives = 90/303 (29%), Gaps = 63/303 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T  +  GQ      L+  ++  +     L H  L  G  G+GKTT+A+++A+ L   
Sbjct: 11  RPKTFADLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCE 65

Query: 82  FRS------------------------TSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                                ++  +L N +         V  I
Sbjct: 66  NAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYII 125

Query: 112 DEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+H LS      +   +E+    +  ++      +     LSR                
Sbjct: 126 DEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNM------- 178

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
                           + +   +        +A    A   +   + G+ R A  LL + 
Sbjct: 179 --------------TAQQVARHLSHVLDSEKIAYDPPALQLLGRAAAGSMRDALSLLDQA 224

Query: 230 RDFAEVAHAKTITREIADAALLRLAIDKM-GFDQLDLRYLTMIARNFGGGPVGIETISAG 288
                   A+   R++  A   +   + + G    D   LT  A+      VG +     
Sbjct: 225 IALGSGKVAEQDVRQMIGAVDKQYLYELLTGIINQDGAALTAKAQEMAACAVGFDN---A 281

Query: 289 LSE 291
           L E
Sbjct: 282 LGE 284


>gi|300933818|ref|ZP_07149074.1| DNA polymerase III subunits gamma and tau [Corynebacterium
           resistens DSM 45100]
          Length = 895

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 50/277 (18%), Positives = 86/277 (31%), Gaps = 29/277 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T  E  GQ      L   +++ +         LF GP G GKT+ A+++AR
Sbjct: 2   ALYRKYRPSTFAEVVGQAHVTEPLSTALDSGRINHAY----LFSGPRGCGKTSSARIMAR 57

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLT----NLEDRDVLFID-----EIHRLSIIVEEILYP 127
            L        GP     G   + L          DV  ID      +  +  + E   + 
Sbjct: 58  SLNC----VEGPTSTPCGKCDSCLALGPGGAGHLDVTEIDAATHNGVEDMRELRERAFFA 113

Query: 128 AMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
             E     +++ E             + V+        I ATT    +   ++ R     
Sbjct: 114 PAESRYRVIIIDEAHMISQSGFNALLKIVEEPPEHLIFIFATTEPEKMLATIRSR-THNY 172

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
                   D++ +++      G+ V D     +     G+PR +  ++ ++   A     
Sbjct: 173 PFRLLTPPDMRGLLESVVSGEGVPVEDSVYPLVIRAGGGSPRDSLSIMDQLLAGAGPDGV 232

Query: 239 KTITREIADAALLRLAIDK--MGFDQLDLRYLTMIAR 273
                           ID+      Q D   L  +  
Sbjct: 233 TYERAVGVLGMTDASLIDRAVESLAQQDQAGLFTVVD 269


>gi|219850060|ref|YP_002464493.1| DNA polymerase III subunits gamma and tau [Chloroflexus aggregans
           DSM 9485]
 gi|219544319|gb|ACL26057.1| DNA polymerase III, subunits gamma and tau [Chloroflexus aggregans
           DSM 9485]
          Length = 613

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 83/226 (36%), Gaps = 20/226 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           R +T  E  GQ      L+  I   +         LF GP G+GKTT+A+++A+ +    
Sbjct: 11  RSQTFAELVGQEHVVQTLRNAIAEDRVGHAY----LFTGPRGVGKTTMARLLAKAVNCLH 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE------EILYPAMEDFQLDL 136
              S        ++   +      DV+ +D     S+             P++   ++ +
Sbjct: 67  PDPSARPCGTC-EMCTAIAEGRAVDVIEMDAASHTSVEDAREIIERVQFRPSVARMKVYI 125

Query: 137 MVGE--------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++        I ATT V  +   +  R         + +  +
Sbjct: 126 IDEAHMLSTAAFNALLKTLEEPPDHALFILATTEVHKVPATILSRCQ-RFTFVRHSVTSM 184

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
              V+R A   G+ + + A   IA  + G+ R A  +L ++  F E
Sbjct: 185 AAHVRRIAAAEGIVLVEGAPEAIARAATGSMRDALGILEQLASFVE 230


>gi|254493794|ref|ZP_05106965.1| DNA polymerase III tau and gamma subunit [Neisseria gonorrhoeae
           1291]
 gi|226512834|gb|EEH62179.1| DNA polymerase III tau and gamma subunit [Neisseria gonorrhoeae
           1291]
          Length = 707

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 49/303 (16%), Positives = 89/303 (29%), Gaps = 63/303 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T  +  GQ      L+  ++  +     L H  L  G  G+GKTT+A+++A+ L   
Sbjct: 11  RPKTFSDLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCE 65

Query: 82  FRS------------------------TSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                                ++  +L N +         V  I
Sbjct: 66  NAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYII 125

Query: 112 DEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+H LS      +   +E+    +  ++      +     LSR                
Sbjct: 126 DEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNM------- 178

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
                           + +   +        +A    A   +   + G+ R A  LL + 
Sbjct: 179 --------------TAQQVADHLAHVLDSEKIAYDPPALQLLGRAAAGSMRDALSLLDQA 224

Query: 230 RDFAEVAHAKTITREIADAALLRLAIDKM-GFDQLDLRYLTMIARNFGGGPVGIETISAG 288
                   A+   R++  A   +   + + G    D   L   A+      VG +     
Sbjct: 225 IALGSGKVAENDVRQMIGAVDKQYLYELLTGIVNQDGEALLAKAQEMAACAVGFDN---A 281

Query: 289 LSE 291
           L E
Sbjct: 282 LGE 284


>gi|218961502|ref|YP_001741277.1| DNA polymerase III, gamma/tau subunits (fragment) [Candidatus
           Cloacamonas acidaminovorans]
 gi|167730159|emb|CAO81071.1| DNA polymerase III, gamma/tau subunits (fragment) [Candidatus
           Cloacamonas acidaminovorans]
          Length = 533

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 86/232 (37%), Gaps = 27/232 (11%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+  +E   Q      L    ++A A        LF GP G+GKT+LA+++A+ L
Sbjct: 7   ARKYRPQNFKEVYAQEHITEIL----QSAIATNRIAHAYLFTGPRGVGKTSLARILAKSL 62

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII-----VEEILYPAMEDFQ 133
                 T+ P  A   +   +       DV+ ID     S+        E+LYPA     
Sbjct: 63  NCVNGPTTTPCNA-CSNCLEITAGTSP-DVIEIDGASNTSVDDIRELQRELLYPASSSNY 120

Query: 134 LDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
              ++ E             ++++        I ATT    +   +  R           
Sbjct: 121 KIYIIDEVHMLSKNAFNALLKTLEEPPDNVIFIFATTEPQKVLPTIISRCQRYDFKRI-- 178

Query: 185 IEDLKTIVQR---GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
              + +IVQR    + L G+ +  E+   IA ++ G  R A  L+ +   + 
Sbjct: 179 --PIASIVQRLQEISVLEGIKIDSESLYLIARKADGGMRDALSLMDQAISYC 228


>gi|332202721|gb|EGJ16790.1| DNA polymerase III, subunits gamma and tau [Streptococcus
           pneumoniae GA41317]
          Length = 551

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 53/296 (17%), Positives = 90/296 (30%), Gaps = 58/296 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     R +   +  GQ      LK  +E      E + H  LF GP G GKT++A++ A
Sbjct: 4   ALYRKYRSQNFSQLVGQEVVAKTLKQAVE-----QEKISHAYLFSGPRGTGKTSVAKIFA 58

Query: 76  RELGVNFRS------------------------TSGPVIAKAGDLAALLTN------LED 105
           + +    +                                   ++  +         L  
Sbjct: 59  KAMNCPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLAR 118

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
             V  IDE+H LS      L   +E+                         I ATT +  
Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPT------------------QNVVFILATTELHK 160

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           +   +  R       +    + +K  +    +   ++   EA   IA R+ G  R A  +
Sbjct: 161 IPATILSRVQRFEFKSIKTQD-IKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSI 219

Query: 226 LRRVRDFAEVAHAKTITREIADAALLRLAIDKM--GFDQLDL-RYLTMIARNFGGG 278
           L +     +     T   E     +   A+D       Q D+ + L+ +   F  G
Sbjct: 220 LDQALSLTQGNELTTAISEEITGTISLSALDDYVAALSQQDVPKALSCLNLLFDNG 275


>gi|301165421|emb|CBW24992.1| DNA polymerase III, tau subunit [Bacteriovorax marinus SJ]
          Length = 622

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 50/297 (16%), Positives = 109/297 (36%), Gaps = 33/297 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  ++  GQ     +L    + A +R +     +  G  G+GKT++A++ A+ +    
Sbjct: 11  RPKRFQDVIGQSHITKSL----QNALSRNKLGHAYILTGTRGIGKTSVARIFAKAIRCES 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL------YP---AMEDFQ 133
           R                  +    +V+ ID     S+     L       P     + + 
Sbjct: 67  RLEDSNACGTCESCQD-FDSASSMNVVEIDGASNNSVDDIRDLIGNIQYLPTSGHYKIYI 125

Query: 134 LDLMVGEGPSA-----RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +D +     SA     ++++   +    I ATT    L   +  R           + DL
Sbjct: 126 IDEVHMLSTSAFNALLKTLEEPPAHAIFILATTEPEKLLGTVLSRCQ-RFDFRNAAVADL 184

Query: 189 KTIVQRGAKLTGLAVT-DEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
              V++ A+   +    DE   +I ++ +G+ R    LL +V  F+E      +T +   
Sbjct: 185 SAHVKKIAESENIQFENDEIIKQICVQGKGSVRDTLSLLDQVLSFSE---DGKVTEQSVS 241

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
            AL        G  +  +  + ++++   G    + ++   L     +++++    +
Sbjct: 242 FAL--------GLAKTSV-IIEIVSKIINGNRDEVVSLYKNLLNENISVKNICHSLL 289


>gi|168490954|ref|ZP_02715097.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae
           CDC0288-04]
 gi|183574571|gb|EDT95099.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae
           CDC0288-04]
          Length = 551

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 53/296 (17%), Positives = 90/296 (30%), Gaps = 58/296 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     R +   +  GQ      LK  +E      E + H  LF GP G GKT++A++ A
Sbjct: 4   ALYRKYRSQNFSQLVGQEVVAKTLKQAVE-----QEKISHAYLFSGPRGTGKTSVAKIFA 58

Query: 76  RELGVNFRS------------------------TSGPVIAKAGDLAALLTN------LED 105
           + +    +                                   ++  +         L  
Sbjct: 59  KAMNCPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLAR 118

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
             V  IDE+H LS      L   +E+                         I ATT +  
Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPT------------------QNVVFILATTELHK 160

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           +   +  R       +    + +K  +    +   ++   EA   IA R+ G  R A  +
Sbjct: 161 IPATILSRVQRFEFKSIKTQD-IKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSI 219

Query: 226 LRRVRDFAEVAHAKTITREIADAALLRLAIDKM--GFDQLDL-RYLTMIARNFGGG 278
           L +     +     T   E     +   A+D       Q D+ + L+ +   F  G
Sbjct: 220 LDQALSLTQGNELTTAISEEITGTISLSALDDYVAALSQQDVPKALSCLNLLFDNG 275


>gi|296810064|ref|XP_002845370.1| replication factor C subunit 4 [Arthroderma otae CBS 113480]
 gi|238842758|gb|EEQ32420.1| replication factor C subunit 4 [Arthroderma otae CBS 113480]
          Length = 352

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 76/227 (33%), Gaps = 38/227 (16%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   +   RP  L++  G  E    LK+      AR   + HV+  G PG+GKTT    +
Sbjct: 27  ELPWVEKYRPIFLDDVVGNTETIERLKII-----ARDGNMPHVIISGMPGIGKTTSILCL 81

Query: 75  AR-----ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDV---------LFIDEIHRLSII 120
           AR              +         +   +     + V         + +DE   ++  
Sbjct: 82  ARQLLGDTYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRHKLVILDEADSMTSG 141

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            ++ L   ME F                   +RF    A  +   +  PLQ R  I    
Sbjct: 142 AQQALRRTMEIFSTT----------------TRFAF--ACNQSNKIIEPLQSRCAILRYS 183

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
              + + +K ++Q   +   +  +D+    +   + G  R A   L+
Sbjct: 184 RLTDAQVVKRLMQ-ICEAEKVKYSDDGIAALVFSAEGDMRQAINNLQ 229


>gi|303388375|ref|XP_003072422.1| DNA replication factor C small subunit [Encephalitozoon
           intestinalis ATCC 50506]
 gi|303301562|gb|ADM11062.1| DNA replication factor C small subunit [Encephalitozoon
           intestinalis ATCC 50506]
          Length = 284

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 64/170 (37%), Gaps = 13/170 (7%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR- 76
                RP++++ F G     S L+     +  R     ++L  GPPG GKTT A ++A  
Sbjct: 3   WTEKYRPKSVDTFEGPEHLKSILR----NSSERGH--PNLLLYGPPGTGKTTFAHLLATR 56

Query: 77  --ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
             EL  +       +  K    A+ L   +D+ V+ +DE   L+   +  L   +ED   
Sbjct: 57  KLELNASDERGISVIREKIKVYASTLE--KDKTVI-LDECENLTSDAQHCLRRVIEDSVN 113

Query: 135 DLMV-GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
              +      ++ +    SR   +  T     +   +    G+      Y
Sbjct: 114 TRFIFITNYPSKIIGPLRSRLVGVKFTLADNRVLEGIGGNEGLGYDKELY 163


>gi|225713814|gb|ACO12753.1| Replication factor C subunit 2 [Lepeophtheirus salmonis]
          Length = 325

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/239 (19%), Positives = 82/239 (34%), Gaps = 38/239 (15%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           ++     +    I   RP+T ++  G  E  S L  F     A      +++  GPPG+G
Sbjct: 1   MVEDKRRETAPWIEKYRPKTFDDIVGNSETVSRLTTF-----AHDGNAPNIIISGPPGVG 55

Query: 67  KTTLAQVVAR------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFID 112
           KTT    +AR            EL  +       V  K    A     L      ++ +D
Sbjct: 56  KTTTILCLARALLGSSFKEAVLELNASNEGGIDVVRNKIKMFAQQKVTLPPGRHKIIVLD 115

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E   ++   ++ L   ME +                 + +RF    A      +  P+Q 
Sbjct: 116 EADSMTEAAQQALRRTMEIYS----------------DTTRF--CLACNASEKVIEPIQS 157

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
           R  +       + E L  +++   +   ++ T +    I   ++G  R A   L+   D
Sbjct: 158 RCAMLRYSKLSDAEILAQVLK-VCEKEDISYTSDGLEAIVFTAQGDMRQALNNLQSTHD 215


>gi|149002400|ref|ZP_01827334.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae
           SP14-BS69]
 gi|149010503|ref|ZP_01831874.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae
           SP19-BS75]
 gi|168493019|ref|ZP_02717162.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae
           CDC3059-06]
 gi|182683780|ref|YP_001835527.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae
           CGSP14]
 gi|221231645|ref|YP_002510797.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae ATCC
           700669]
 gi|225854373|ref|YP_002735885.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae
           JJA]
 gi|225858665|ref|YP_002740175.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae
           70585]
 gi|237822659|ref|ZP_04598504.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae
           CCRI 1974M2]
 gi|147759337|gb|EDK66329.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae
           SP14-BS69]
 gi|147764984|gb|EDK71913.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae
           SP19-BS75]
 gi|182629114|gb|ACB90062.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae
           CGSP14]
 gi|183576952|gb|EDT97480.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae
           CDC3059-06]
 gi|220674105|emb|CAR68624.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae ATCC
           700669]
 gi|225721913|gb|ACO17767.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae
           70585]
 gi|225723299|gb|ACO19152.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae JJA]
 gi|301794000|emb|CBW36398.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae
           INV104]
 gi|332204869|gb|EGJ18934.1| DNA polymerase III, subunits gamma and tau [Streptococcus
           pneumoniae GA47901]
          Length = 551

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 53/296 (17%), Positives = 90/296 (30%), Gaps = 58/296 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     R +   +  GQ      LK  +E      E + H  LF GP G GKT++A++ A
Sbjct: 4   ALYRKYRSQNFSQLVGQEVVAKTLKQAVE-----QEKISHAYLFSGPRGTGKTSVAKIFA 58

Query: 76  RELGVNFRS------------------------TSGPVIAKAGDLAALLTN------LED 105
           + +    +                                   ++  +         L  
Sbjct: 59  KAMNCPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLAR 118

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
             V  IDE+H LS      L   +E+                         I ATT +  
Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPT------------------QNVVFILATTELHK 160

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           +   +  R       +    + +K  +    +   ++   EA   IA R+ G  R A  +
Sbjct: 161 IPATILSRVQRFEFKSIKTQD-IKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSI 219

Query: 226 LRRVRDFAEVAHAKTITREIADAALLRLAIDKM--GFDQLDL-RYLTMIARNFGGG 278
           L +     +     T   E     +   A+D       Q D+ + L+ +   F  G
Sbjct: 220 LDQALSLTQGNELTTAISEEITGTISLSALDDYVAALSQQDVPKALSCLNLLFDNG 275


>gi|145588885|ref|YP_001155482.1| DNA polymerase III, subunits gamma and tau [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145047291|gb|ABP33918.1| DNA polymerase III, subunits gamma and tau [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 553

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 51/268 (19%), Positives = 97/268 (36%), Gaps = 34/268 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T  E  GQ      L   ++  +     L H  LF G  G+GKTT+A+++A+ L   
Sbjct: 11  RPKTFSELVGQDHVVKALTHALDQGR-----LHHAWLFTGTRGVGKTTIARIMAKALNCT 65

Query: 82  FRSTSGPVIAKA-GDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAMEDFQ 133
               SG + ++  G   A +     R V +I+        +  ++ ++E+  Y       
Sbjct: 66  GADGSGKMTSEPCGKCPACMEIDAGRFVDYIEMDAASNRGVDDIAALLEKAAYAPSNGRY 125

Query: 134 LDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
              M+ E             ++++        I ATT    +   +  R  +   L    
Sbjct: 126 KVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTILSRC-LQFNLKQMP 184

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +  +   +++      +     A   +A  ++G+ R A  L  +   +A    A  ++ E
Sbjct: 185 VPLIVEHLEKVLAAEKVEYEVNALRVLAKAAQGSMRDALSLTDQAIAYA----AGKVSEE 240

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIA 272
                L  L       D   +R L  + 
Sbjct: 241 SVRGMLGTLD------DAYLIRILDCLI 262


>gi|168484747|ref|ZP_02709692.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae
           CDC1873-00]
 gi|172042059|gb|EDT50105.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae
           CDC1873-00]
 gi|332204021|gb|EGJ18088.1| DNA polymerase III, subunits gamma and tau [Streptococcus
           pneumoniae GA47368]
          Length = 551

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 53/296 (17%), Positives = 90/296 (30%), Gaps = 58/296 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     R +   +  GQ      LK  +E      E + H  LF GP G GKT++A++ A
Sbjct: 4   ALYRKYRSQNFSQLVGQEVVAKTLKQAVE-----QEKISHAYLFSGPRGTGKTSVAKIFA 58

Query: 76  RELGVNFRS------------------------TSGPVIAKAGDLAALLTN------LED 105
           + +    +                                   ++  +         L  
Sbjct: 59  KAMNCPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIREIRDKSTYTPSLAR 118

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
             V  IDE+H LS      L   +E+                         I ATT +  
Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPT------------------QNVVFILATTELHK 160

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           +   +  R       +    + +K  +    +   ++   EA   IA R+ G  R A  +
Sbjct: 161 IPATILSRVQRFEFKSIKTQD-IKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSI 219

Query: 226 LRRVRDFAEVAHAKTITREIADAALLRLAIDKM--GFDQLDL-RYLTMIARNFGGG 278
           L +     +     T   E     +   A+D       Q D+ + L+ +   F  G
Sbjct: 220 LDQALSLTQGNELTTAISEEITGTISLSALDDYVAALSQQDVPKALSCLNLLFDNG 275


>gi|322834005|ref|YP_004214032.1| DNA polymerase III, subunits gamma and tau [Rahnella sp. Y9602]
 gi|321169206|gb|ADW74905.1| DNA polymerase III, subunits gamma and tau [Rahnella sp. Y9602]
          Length = 649

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 53/269 (19%), Positives = 91/269 (33%), Gaps = 31/269 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKTT+A+++A+ L    
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTTIARLLAKGLNCET 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
             TS P      D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 67  GITSTP--CGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++   +    + ATT    L   +  R  +   L   + E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRC-LQFHLKALDAEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +     A   ++  + G+ R A  L     D A       +T E    
Sbjct: 184 RKQLEHVLTQETITTEPRALQLLSRAADGSMRDALSL----TDQAIAMGQGAVTTETVAQ 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGG 277
            L  L       D+  L  L  +    GG
Sbjct: 240 MLGTLD------DEQPLAMLEALVSADGG 262


>gi|240125776|ref|ZP_04738662.1| DNA polymerase III subunits gamma and tau [Neisseria gonorrhoeae
           SK-92-679]
 gi|268684373|ref|ZP_06151235.1| DNA polymerase III tau and gamma subunit [Neisseria gonorrhoeae
           SK-92-679]
 gi|268624657|gb|EEZ57057.1| DNA polymerase III tau and gamma subunit [Neisseria gonorrhoeae
           SK-92-679]
          Length = 707

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 49/303 (16%), Positives = 89/303 (29%), Gaps = 63/303 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T  +  GQ      L+  ++  +     L H  L  G  G+GKTT+A+++A+ L   
Sbjct: 11  RPKTFSDLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCE 65

Query: 82  FRS------------------------TSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                                ++  +L N +         V  I
Sbjct: 66  NAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYII 125

Query: 112 DEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+H LS      +   +E+    +  ++      +     LSR                
Sbjct: 126 DEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNM------- 178

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
                           + +   +        +A    A   +   + G+ R A  LL + 
Sbjct: 179 --------------TAQQVADHLAHVLDSEKIAYDPPALQLLGRAAAGSMRDALSLLDQA 224

Query: 230 RDFAEVAHAKTITREIADAALLRLAIDKM-GFDQLDLRYLTMIARNFGGGPVGIETISAG 288
                   A+   R++  A   +   + + G    D   L   A+      VG +     
Sbjct: 225 IALGSGKVAENDVRQMIGAVDKQYLYELLTGIVNQDGEALLAKAQEMAACAVGFDN---A 281

Query: 289 LSE 291
           L E
Sbjct: 282 LGE 284


>gi|256826612|ref|YP_003150571.1| DNA polymerase III, subunit gamma/tau [Cryptobacterium curtum DSM
           15641]
 gi|256582755|gb|ACU93889.1| DNA polymerase III, subunit gamma/tau [Cryptobacterium curtum DSM
           15641]
          Length = 900

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 49/236 (20%), Positives = 83/236 (35%), Gaps = 22/236 (9%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +A     RP+   +  GQ      LK  IE  K         LF GP G GKTT+A+++A
Sbjct: 3   EALYRKYRPQVFGDVVGQEHIERTLKNAIEQDKVSHAY----LFCGPRGTGKTTMARLLA 58

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI--IVEEIL----YPAM 129
           + L      TS P      +   +   +   DV  +D   R  +  + EEI+    +   
Sbjct: 59  KALLCEKGPTSEP-DGSCRECQEIAEGVHP-DVYELDAASRTGVENVREEIIGRVNFAPT 116

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                  ++ E             ++++   +    I  TT    +   +  R       
Sbjct: 117 RGKAKIYIIDEVHMLSIAAFNALLKTLEEPPAHVVFILCTTDPQKVPETIHSRCQ-RFDF 175

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
           +    E++ + +        +    EA   IA R+ G  R A   L ++  F E  
Sbjct: 176 HRLSNEEIVSRLGAVCVAENVEFEGEALDLIAHRADGGMRNALTALEQLIAFGEGK 231


>gi|148993679|ref|ZP_01823126.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae
           SP9-BS68]
 gi|168490300|ref|ZP_02714499.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae
           SP195]
 gi|303255298|ref|ZP_07341369.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae
           BS455]
 gi|303260384|ref|ZP_07346353.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae
           SP-BS293]
 gi|303262741|ref|ZP_07348679.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae
           SP14-BS292]
 gi|303265030|ref|ZP_07350944.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae
           BS397]
 gi|303267140|ref|ZP_07353009.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae
           BS457]
 gi|303269364|ref|ZP_07355135.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae
           BS458]
 gi|147927759|gb|EDK78782.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae
           SP9-BS68]
 gi|183571341|gb|EDT91869.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae
           SP195]
 gi|301801689|emb|CBW34395.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae
           INV200]
 gi|302597767|gb|EFL64842.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae
           BS455]
 gi|302636063|gb|EFL66560.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae
           SP14-BS292]
 gi|302638419|gb|EFL68885.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae
           SP-BS293]
 gi|302641082|gb|EFL71458.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae
           BS458]
 gi|302643348|gb|EFL73626.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae
           BS457]
 gi|302645390|gb|EFL75623.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae
           BS397]
 gi|332073196|gb|EGI83675.1| DNA polymerase III, subunits gamma and tau [Streptococcus
           pneumoniae GA17570]
          Length = 551

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 53/296 (17%), Positives = 90/296 (30%), Gaps = 58/296 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     R +   +  GQ      LK  +E      E + H  LF GP G GKT++A++ A
Sbjct: 4   ALYRKYRSQNFSQLVGQEVVAKTLKQAVE-----QEKISHAYLFSGPRGTGKTSVAKIFA 58

Query: 76  RELGVNFRS------------------------TSGPVIAKAGDLAALLTN------LED 105
           + +    +                                   ++  +         L  
Sbjct: 59  KAMNCPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIREIRDKSTYTPSLAR 118

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
             V  IDE+H LS      L   +E+                         I ATT +  
Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPT------------------QNVVFILATTELHK 160

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           +   +  R       +    + +K  +    +   ++   EA   IA R+ G  R A  +
Sbjct: 161 IPATILSRVQRFEFKSIKTQD-IKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSI 219

Query: 226 LRRVRDFAEVAHAKTITREIADAALLRLAIDKM--GFDQLDL-RYLTMIARNFGGG 278
           L +     +     T   E     +   A+D       Q D+ + L+ +   F  G
Sbjct: 220 LDQALSLTQGNELTTAISEEITGTISLSALDDYVAALSQQDVPKALSCLNLLFDNG 275


>gi|57109940|ref|XP_535837.1| PREDICTED: similar to Activator 1 37 kDa subunit (Replication
           factor C 37 kDa subunit) (A1 37 kDa subunit) (RF-C 37
           kDa subunit) (RFC37) [Canis familiaris]
          Length = 363

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 76/234 (32%), Gaps = 45/234 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+ ++E   Q E  + LK  +E A      L ++LF GPPG GKT+     AR
Sbjct: 38  PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGAD-----LPNLLFYGPPGTGKTSTILAAAR 92

Query: 77  -------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD--------VLFIDEIH 115
                        EL  +       V  K  + A L  +    D        ++ +DE  
Sbjct: 93  ELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEAD 152

Query: 116 RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
            ++   +  L   ME                     +RF        V  +  PL  R  
Sbjct: 153 SMTSAAQAALRRTMEKESKT----------------TRF--CLICNYVSRIIEPLTSRCS 194

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
              R      +  +  +   A    + V++E    +   S G  R A   L+  
Sbjct: 195 -KFRFKPLSDKIQQQRLLDIADKEHVKVSNEGIAYLVKVSEGDLRKAITFLQSA 247


>gi|148546837|ref|YP_001266939.1| DNA polymerase III subunits gamma and tau [Pseudomonas putida F1]
 gi|148510895|gb|ABQ77755.1| DNA polymerase III, gamma subunit / DNA polymerase III, tau subunit
           [Pseudomonas putida F1]
          Length = 692

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 62/305 (20%), Positives = 92/305 (30%), Gaps = 65/305 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPR+  E  GQ      LK  I A     + L H  LF G  G+GKTT+A+++A+ L   
Sbjct: 11  RPRSFREMVGQTHV---LKALINA--LDNQRLHHAYLFTGTRGVGKTTIARIIAKCLNCE 65

Query: 82  FRSTS------------------------GPVIAKAGDLAALLTNLE------DRDVLFI 111
              TS                             K  D   LL N++         V  I
Sbjct: 66  TGITSTPCGTCSVCREIDEGRFVDLIEIDAASRTKVEDTRELLDNVQYAPSRGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         I ATT    L   + 
Sbjct: 126 DEVHMLSTHSFNALLKTLEE------------------PPPYVKFILATTDPQKLPATIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L     E +   +        +   ++A   +   + G+ R A  L     D
Sbjct: 168 SRC-LQFSLKNMSPERVVEHLSHVLAAENVPFEEDALWLLGRAADGSMRDAMSL----TD 222

Query: 232 FAEVAHAKTITREIADAALLRLAIDK-MG-----FDQLDLRYLTMIARNFGGGPVGIETI 285
            A       +      A L  L   +  G      +      L  +      GP     +
Sbjct: 223 QAIAFGEGKVLAADVRAMLGSLDHGQVYGVLQALLEGDARALLEAVRNLAEQGPDWSGVL 282

Query: 286 SAGLS 290
           +  L+
Sbjct: 283 AEMLN 287


>gi|302384618|ref|YP_003820440.1| DNA polymerase III, subunits gamma and tau [Clostridium
           saccharolyticum WM1]
 gi|302195246|gb|ADL02817.1| DNA polymerase III, subunits gamma and tau [Clostridium
           saccharolyticum WM1]
          Length = 531

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 79/226 (34%), Gaps = 25/226 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP +  +  GQ      LK  I A +         LF G  G GKT++A++ A+ +    
Sbjct: 11  RPPSFSDVKGQDHIVQTLKNQIVAGRIGHAY----LFCGTRGTGKTSIAKIFAKAVNCEC 66

Query: 83  RSTSGPVIAKAGDLA--ALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLD 135
                P     G+      +      +V+ ID      +  +  I +E+ YP  E     
Sbjct: 67  PEDGSP----CGECRTCKNIAAGASLNVVEIDAASNNGVENIREIRDEVQYPPTEGKYRV 122

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             ++++   S    I ATT V  +   +  R           +E
Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPSYVIFILATTEVQKIPVTVLSRCQRYDFKRI-TVE 181

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
            +   ++       + V D A   IA  + G  R A  LL +   F
Sbjct: 182 TIVEHLKELTAAEHIQVEDRALTYIAKSADGALRDALSLLDQCIAF 227


>gi|288932435|ref|YP_003436495.1| ATPase AAA [Ferroglobus placidus DSM 10642]
 gi|288894683|gb|ADC66220.1| AAA ATPase central domain protein [Ferroglobus placidus DSM 10642]
          Length = 506

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/239 (18%), Positives = 83/239 (34%), Gaps = 34/239 (14%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
            +   RP+T+++     +    +  + E  K R      +LF GPPG+GKT+LA  +A  
Sbjct: 3   WVEKYRPKTIKDVVAPSDIIKTVVTWAENWK-RGVKQKPLLFAGPPGVGKTSLALALANT 61

Query: 78  LGVNFRSTSG------PVIAKAGDLAALLTNL-----------EDRDVLFIDEIHRLSII 120
            G      +        VI +     A    L               ++ +DE+  +S  
Sbjct: 62  YGWEVVELNASDQRNWSVIYRIVGEGAFNETLSDEGDFLSSREGKLKLIVLDEVDNISKK 121

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                     +  L  ++   P    + I                  +P        +  
Sbjct: 122 E-----DFGGESALIKILKRNPPQPMILI-----------ANEPYNLSPELRNLVTMVNF 165

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
                + +  +++R AKL G+ +  +A   IA  + G  R A   L+ V +  +V  A+
Sbjct: 166 RRLTRDQVVKVLERIAKLEGIEIDKKALYAIADNAGGDLRAAINDLQAVAEGRKVVKAE 224


>gi|194397860|ref|YP_002037501.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae
           G54]
 gi|194357527|gb|ACF55975.1| DNA polymerase III, subunits gamma and tau [Streptococcus
           pneumoniae G54]
          Length = 551

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 53/296 (17%), Positives = 90/296 (30%), Gaps = 58/296 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     R +   +  GQ      LK  +E      E + H  LF GP G GKT++A++ A
Sbjct: 4   ALYRKYRSQNFSQLVGQEVVAKTLKQAVE-----QEKISHAXLFSGPRGTGKTSVAKIFA 58

Query: 76  RELGVNFRS------------------------TSGPVIAKAGDLAALLTN------LED 105
           + +    +                                   ++  +         L  
Sbjct: 59  KAMNCPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLAR 118

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
             V  IDE+H LS      L   +E+                         I ATT +  
Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPT------------------QNVVFILATTELHK 160

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           +   +  R       +    + +K  +    +   ++   EA   IA R+ G  R A  +
Sbjct: 161 IPATILSRVQRFEFKSIKTQD-IKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSI 219

Query: 226 LRRVRDFAEVAHAKTITREIADAALLRLAIDKM--GFDQLDL-RYLTMIARNFGGG 278
           L +     +     T   E     +   A+D       Q D+ + L+ +   F  G
Sbjct: 220 LDQALSLTQGNELTTAISEEITGTISLSALDDYVAALSQQDVPKALSCLNLLFDNG 275


>gi|325290593|ref|YP_004266774.1| ATP-dependent protease LonB [Syntrophobotulus glycolicus DSM 8271]
 gi|324965994|gb|ADY56773.1| ATP-dependent protease LonB [Syntrophobotulus glycolicus DSM 8271]
          Length = 569

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 77/357 (21%), Positives = 111/357 (31%), Gaps = 90/357 (25%)

Query: 4   REGLLS-RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           RE L+  R +S         RP  L E  GQ E    LK  I  A  +     HVL  GP
Sbjct: 45  RERLIKLRKISLSVPLSEKTRPGDLREIIGQKEGVKALKAAICGANPQ-----HVLIYGP 99

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDV-------------- 108
           PG+GKT +A++V  E   +  S   P  AK  +L       ++R +              
Sbjct: 100 PGVGKTAVARLVLEEAKKSNLSPFAP-DAKYIELDGATARFDERGIADPLIGSVHDPIYQ 158

Query: 109 -------------------------LFIDEIHRLSIIVEEILYPAMEDFQLDL------M 137
                                    LFIDEI  L  I    L   +ED ++ L       
Sbjct: 159 GAGAMGVAGIPQPKMGAVSKAHGGVLFIDEIGELHSIQINKLLKVLEDRKVMLESSYYSS 218

Query: 138 VGEGPSARSVKI----NLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
                 A    I      + F LI ATT+      P      I I       E++  +  
Sbjct: 219 EDNNIPAHIHDIFQNGLPADFRLIGATTKSPAEIPPAIRSRCIEIFFRNLLPEEIGIVAS 278

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           + A    + ++DEA   I   +          +  V+  A VA  +              
Sbjct: 279 KAAAKIEMRISDEALDIIQKYANN----GREAVNIVQLAAGVAGNE-------------- 320

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGP-----------VGIETISAGLSEPRDAIEDL 299
                G + LD R +  +       P           VG+    A        + +L
Sbjct: 321 -----GLNCLDRRIIEWVVTTGQYVPRLEKKIPDSPQVGVVNGLAVYGSNTGTLLEL 372


>gi|305663892|ref|YP_003860180.1| AAA ATPase central domain protein [Ignisphaera aggregans DSM 17230]
 gi|304378461|gb|ADM28300.1| AAA ATPase central domain protein [Ignisphaera aggregans DSM 17230]
          Length = 480

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 78/226 (34%), Gaps = 36/226 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             I   RP+TL +   Q EA +  KV     K        +L  GPPG GKT+L + +A 
Sbjct: 9   PWIIKYRPKTLSDIVNQDEAKN--KVLEWLKKWPNVQRKALLLYGPPGCGKTSLVEAIAN 66

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL--------EDRDVLFIDEIHRLSIIVEEILYPA 128
           E        +     +  D+  +            + R ++ +DE+  +S   +E    A
Sbjct: 67  EFKYELIEMNASDFRRRSDIERIAIRASSMQSIFGKTRKIILLDEVDGISAKEDEGGIEA 126

Query: 129 MEDFQLD-----LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ++          +M    P   S+++                            ++    
Sbjct: 127 IKQLVEKTSVPVIMTANNPYDPSLRVLR---------------------EIAEMVQFKKL 165

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
              D++ ++ +  +   L   +EA   I  R+ G  R A   L+ V
Sbjct: 166 SKSDMRMVLNKICRAENLRCDEEAIDYIIERAEGDLRAAINDLQAV 211


>gi|298373537|ref|ZP_06983526.1| DNA polymerase III, gamma/tau subunit [Bacteroidetes oral taxon 274
           str. F0058]
 gi|298274589|gb|EFI16141.1| DNA polymerase III, gamma/tau subunit [Bacteroidetes oral taxon 274
           str. F0058]
          Length = 575

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 52/276 (18%), Positives = 94/276 (34%), Gaps = 34/276 (12%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T     GQ    + LK    A   R  A    LF GP G+GKTT A++ A+ +
Sbjct: 8   ARKYRPATFRSVIGQNSLTTTLK---NAIITRHLA-HAYLFCGPRGVGKTTCARIFAKTI 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV-----EEILYPAMEDFQ 133
             +  +  G    +     +   N     +  +D     S+       ++++ P      
Sbjct: 64  NCSNITEEGEACNQCESCVSFNENRSLN-IFEMDAASNNSVDDIRELVKQVMVPPQIGRY 122

Query: 134 LDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
              ++ E             ++++        I ATT    +   +  R  +    N  +
Sbjct: 123 RVYIIDEVHMLSTAAFNAFLKTLEEPPEYAIFILATTEKHKILPTIISRCQV-YDFNRIQ 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           I D    ++  A+   + V  EA   +A ++ G  R A  +  ++  +      K   +E
Sbjct: 182 INDTVDYLKYVAQNEKIDVETEALEVMAQKADGAMRDALSIFDQIVSYC---GNKITYKE 238

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV 280
           + D             + LD  Y   +   F  G V
Sbjct: 239 VIDI-----------LNVLDYEYYLQMVDCFVRGDV 263


>gi|237712928|ref|ZP_04543409.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. D1]
 gi|262409631|ref|ZP_06086171.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. 2_1_22]
 gi|294647112|ref|ZP_06724716.1| DNA polymerase III, subunit gamma and tau [Bacteroides ovatus SD CC
           2a]
 gi|294807901|ref|ZP_06766682.1| DNA polymerase III, subunit gamma and tau [Bacteroides
           xylanisolvens SD CC 1b]
 gi|229447047|gb|EEO52838.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. D1]
 gi|262352484|gb|EEZ01584.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. 2_1_22]
 gi|292637529|gb|EFF55943.1| DNA polymerase III, subunit gamma and tau [Bacteroides ovatus SD CC
           2a]
 gi|294444899|gb|EFG13585.1| DNA polymerase III, subunit gamma and tau [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 621

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 76/228 (33%), Gaps = 20/228 (8%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T E   GQ    + LK  I   K         LF GP G+GKTT A++ A+ +
Sbjct: 8   ARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAY----LFCGPRGVGKTTCARIFAKTI 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL-----YPAMEDFQ 133
                +  G    +     A        ++  +D     S+     L      P      
Sbjct: 64  NCMTPTADGEACNQCESCVA-FNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKY 122

Query: 134 LDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
              ++ E             ++++        I ATT    +   +  R  I    N   
Sbjct: 123 KVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQI-YDFNRIS 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           +ED    +   A   G+    EA   IAM++ G  R A  +  +V  F
Sbjct: 182 VEDTVNHLSYVASKEGITAEPEALNVIAMKADGGMRDALSIFDQVVSF 229


>gi|26990960|ref|NP_746385.1| DNA polymerase III subunits gamma and tau [Pseudomonas putida
           KT2440]
 gi|24985983|gb|AAN69849.1|AE016623_11 DNA polymerase III, gamma and tau subunits [Pseudomonas putida
           KT2440]
          Length = 691

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 62/305 (20%), Positives = 92/305 (30%), Gaps = 65/305 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPR+  E  GQ      LK  I A     + L H  LF G  G+GKTT+A+++A+ L   
Sbjct: 11  RPRSFREMVGQTHV---LKALINA--LDNQRLHHAYLFTGTRGVGKTTIARIIAKCLNCE 65

Query: 82  FRSTS------------------------GPVIAKAGDLAALLTNLE------DRDVLFI 111
              TS                             K  D   LL N++         V  I
Sbjct: 66  TGITSTPCGTCSVCREIDEGRFVDLIEIDAASRTKVEDTRELLDNVQYAPSRGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         I ATT    L   + 
Sbjct: 126 DEVHMLSTHSFNALLKTLEE------------------PPPYVKFILATTDPQKLPATIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L     E +   +        +   ++A   +   + G+ R A  L     D
Sbjct: 168 SRC-LQFSLKNMSPERVVEHLSHVLAAENVPFEEDALWLLGRAADGSMRDAMSL----TD 222

Query: 232 FAEVAHAKTITREIADAALLRLAIDK-MG-----FDQLDLRYLTMIARNFGGGPVGIETI 285
            A       +      A L  L   +  G      +      L  +      GP     +
Sbjct: 223 QAIAFGEGKVLAADVRAMLGSLDHGQVYGVLQALLEGDARALLEAVRNLAEQGPDWSGVL 282

Query: 286 SAGLS 290
           +  L+
Sbjct: 283 AEMLN 287


>gi|329964135|ref|ZP_08301301.1| DNA polymerase III, subunit gamma and tau [Bacteroides fluxus YIT
           12057]
 gi|328525655|gb|EGF52684.1| DNA polymerase III, subunit gamma and tau [Bacteroides fluxus YIT
           12057]
          Length = 609

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 59/306 (19%), Positives = 99/306 (32%), Gaps = 27/306 (8%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T E   GQ    + LK  I   K         LF GP G+GKTT A++ A+ +
Sbjct: 8   ARKYRPSTFESVVGQRALTTTLKNAIATGKLAHAY----LFCGPRGVGKTTCARIFAKTI 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL-----YPAMEDFQ 133
                +  G    +     A        ++  +D     S+     L      P      
Sbjct: 64  NCMNPTADGEACNQCESCTA-FNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKY 122

Query: 134 LDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
              ++ E             ++++        I ATT    +   +  R  I        
Sbjct: 123 KVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFSRI-G 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +ED    +   A   G+    EA   IA+++ G  R A  +  +V  F           E
Sbjct: 182 VEDTVAHLAYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSFTGGHITYKSVIE 241

Query: 245 IADAALLRLAIDKMGFDQLDLRY---LTMIARNFGGGPVG---IETISAGLSEPRDAIED 298
             +  L      K+    LD +    L ++      G  G   I  +S+ L +   + + 
Sbjct: 242 NLN-VLDYEYYFKLTDFFLDNKVGDALLLLNDVLNKGFDGSHFITGLSSHLRDLLVSKDT 300

Query: 299 LIEPYM 304
           +  P +
Sbjct: 301 VTLPLL 306


>gi|255284258|ref|ZP_05348813.1| DNA polymerase III, gamma and tau subunit [Bryantella formatexigens
           DSM 14469]
 gi|255265211|gb|EET58416.1| DNA polymerase III, gamma and tau subunit [Bryantella formatexigens
           DSM 14469]
          Length = 541

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 52/233 (22%), Positives = 82/233 (35%), Gaps = 27/233 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T  +  GQ      LK  I++ +         LF G  G GKTT+A+++A+
Sbjct: 5   ALYRKFRPDTFADVKGQDAVVQTLKNQIKSGRVGHAY----LFCGTRGTGKTTIAKIMAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +         P   +     A+        V+ ID      +  +  I EE+ Y   E 
Sbjct: 61  AVNCEHPVDGSP-CNECATCRAIAAGSSLN-VIEIDAASNNGVDNIREIREEVSYSPTEG 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++   S    I ATT    L   +  R         
Sbjct: 119 RYKVYIIDEVHMLSIGAFNALLKTLEEPPSYVIFILATTEANKLPVTILSRCQRYDFKRI 178

Query: 183 YEIEDLKTIVQRGAKLT---GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
                + TI +R  +L     L   D+A   IA ++ G  R A  LL +   F
Sbjct: 179 ----PVATIEERLQELLAAEKLEAEDKAVRYIARKADGALRDALSLLDQCIAF 227


>gi|166368134|ref|YP_001660407.1| DNA polymerase III gamma/tau subunit [Microcystis aeruginosa
           NIES-843]
 gi|166090507|dbj|BAG05215.1| DNA polymerase III gamma/tau subunit [Microcystis aeruginosa
           NIES-843]
          Length = 654

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 84/232 (36%), Gaps = 19/232 (8%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +      RP+T  +  GQ    + L      A          LF GP G GKT+ A+++A
Sbjct: 4   EPLHHKYRPQTFADLVGQSAIATTLS----NALISERIAPAYLFTGPRGTGKTSSARILA 59

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAME 130
           + L         P+      +   + N    DV+ ID      +  +  I+E   +  ++
Sbjct: 60  KSLNCLSSDHPTPIPCGKCSVCQAIANGSALDVIEIDAASNTGVDNIREIIERSQFAPVQ 119

Query: 131 DFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
                 ++ E             ++++    R   + ATT    +   +  R        
Sbjct: 120 CRYKVYVIDECHMLSTAAFNALLKTLEEPPDRVIFVLATTDPQRVLPTIISRCQ-RFDYR 178

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
              ++ +   +Q+ A++  + +  EA   +A  + G  R A  LL ++   A
Sbjct: 179 RIALDAMVAHLQKIAQIEAIDINLEALTLVAQIANGGLRDAESLLDQLSLLA 230


>gi|325288352|ref|YP_004264533.1| DNA polymerase III, tau subunit [Syntrophobotulus glycolicus DSM
           8271]
 gi|324963753|gb|ADY54532.1| DNA polymerase III, tau subunit [Syntrophobotulus glycolicus DSM
           8271]
          Length = 531

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 64/305 (20%), Positives = 106/305 (34%), Gaps = 39/305 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPR  ++  GQ       K  +  A    +     LF GP G GKTT A+++A+ L   F
Sbjct: 11  RPRRFQDLVGQEHV----KRILTNALISNKVAHAYLFSGPRGTGKTTAAKILAKALNCAF 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
           R    P      D    +   +  DVL ID      I  +  + E +   A        +
Sbjct: 67  RRGEEPCNEC--DSCQGIDQGQAMDVLEIDAASNRGIDEIRNLRENVKLAATSGEYKVYI 124

Query: 138 VGEGPS--ARSVKINLSR-------FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E     A +    L            I ATT    +   +  R       +    E +
Sbjct: 125 IDEVHMLTAEAFNALLKTLEEPPTGVVFIMATTEPHKVPLTILSRVQ-RFEFHRISPEMI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              +Q         + +EA   IA ++ G  R A  +L +      + H   IT E    
Sbjct: 184 VQRLQEVCDSLDRKIAEEALMVIASKAEGGLRDALSILDQC-----LLHEGDITLEFVFE 238

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS---EPRDAIEDLIEPYMI 305
            L  +       +      L  I     G  + +  ++  ++   +PR  I +L+E   +
Sbjct: 239 ILGVVG------ESFSADLLEAILGEDCG--LVLTKLNDAVAKGRDPRQIIRELLEY--L 288

Query: 306 QQGFI 310
           +QG +
Sbjct: 289 RQGLL 293


>gi|307706413|ref|ZP_07643223.1| DNA polymerase III, subunits gamma and tau [Streptococcus mitis
           SK321]
 gi|307618200|gb|EFN97357.1| DNA polymerase III, subunits gamma and tau [Streptococcus mitis
           SK321]
          Length = 551

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 53/296 (17%), Positives = 91/296 (30%), Gaps = 58/296 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     R +   +  GQ      LK  +E      E + H  LF GP G GKT++A++ A
Sbjct: 4   ALYRKYRSQNFSQLVGQEVVAKTLKQAVE-----QEKISHAYLFSGPRGTGKTSVAKIFA 58

Query: 76  RELGVNFRS------------------------TSGPVIAKAGDLAALLTN------LED 105
           + +    +                                   ++  +         L  
Sbjct: 59  KAMNCPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLAR 118

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
             V  IDE+H LS      L   +E+                         I ATT +  
Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPT------------------QNVVFILATTELHK 160

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           +   +  R       +    + +K  ++   +   ++   EA   IA R+ G  R A  +
Sbjct: 161 IPATILSRVQRFEFKSIKTQD-IKEHIRYILEKENISSEPEAVEIIARRAEGGMRDALSI 219

Query: 226 LRRVRDFAEVAHAKTITREIADAALLRLAIDKM--GFDQLDL-RYLTMIARNFGGG 278
           L +     +     T   E     +   A+D       Q D+ + L+ +   F  G
Sbjct: 220 LDQALSLTQGNELTTTISEEITGTISLSALDDYVAALSQQDVPKALSCLNLLFDNG 275


>gi|311743404|ref|ZP_07717211.1| DNA polymerase III, subunits gamma and tau [Aeromicrobium marinum
           DSM 15272]
 gi|311313472|gb|EFQ83382.1| DNA polymerase III, subunits gamma and tau [Aeromicrobium marinum
           DSM 15272]
          Length = 679

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 57/175 (32%), Gaps = 26/175 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T  E  GQ      L+  + A +         LF GP G GKTT A+++AR
Sbjct: 6   ALYRRYRPETFAEVIGQEHVTDPLRHALAANRVNHAY----LFSGPRGCGKTTSARILAR 61

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR----DVLFID-----EIHRLSIIVEEILYP 127
            L         PV    G+  +            DV+ ID      +     + E   + 
Sbjct: 62  ALNCE----QAPVSDPCGECQSCRDLARGGPGSVDVIEIDAASHGGVDDARDLRERAFFA 117

Query: 128 AMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
            +       ++ E             + V+        I ATT    +   ++ R
Sbjct: 118 PVSSRYKVYIIDEAHMVSPQGFNALLKLVEEPPPHLKFIFATTEPDKVIGTIRSR 172


>gi|303274701|ref|XP_003056666.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226461018|gb|EEH58311.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 331

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 62/302 (20%), Positives = 100/302 (33%), Gaps = 56/302 (18%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RPR + + + Q E    L+  +E A      + H+LF GPPG GKTT A  + R
Sbjct: 8   PWVEKYRPRKIGDVSHQEEVVRTLQKALETA-----NMPHMLFYGPPGTGKTTCALAICR 62

Query: 77  -------------ELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHR 116
                        EL  +       V  K    A+                +L +DE   
Sbjct: 63  QLYGPDLFKSRVLELNASDERGISVVRNKIKGFASTAVGQAVPGYPCPPYKILILDEADS 122

Query: 117 LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
           ++   +  L   ME                    ++RF +      V  +  P+  R   
Sbjct: 123 MTTDAQSALRRTMETHS----------------KVTRFFI--LCNYVSRIIEPIASRCA- 163

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
             R      E +   ++  A+  GL + +      A  S G  R A  LL+     A + 
Sbjct: 164 KFRFKPLGSEVMSDRLKHIAEREGLTLGEGVYDAAAKHSGGDMRKAITLLQ---SSARLF 220

Query: 237 HAKTITREIADAALLRLAIDK-------MGFDQLDLRY--LTMIARNFGGGPVGIETISA 287
            AK +T E   A    +A D         G +  D     L ++ R+   G   +   + 
Sbjct: 221 GAKELTGEDIIAVAGAIAEDDVAELLDLCGKNAFDRAIGKLDVMLRDGFPGLQILTQFAD 280

Query: 288 GL 289
            +
Sbjct: 281 AV 282


>gi|111021176|ref|YP_704148.1| DNA polymerase III subunits gamma and tau [Rhodococcus jostii RHA1]
 gi|110820706|gb|ABG95990.1| DNA polymerase III subunit [Rhodococcus jostii RHA1]
          Length = 753

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/235 (18%), Positives = 78/235 (33%), Gaps = 19/235 (8%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP +  E  GQ      L   ++A +         LF GP G GKT+ A+++AR
Sbjct: 2   ALYRKYRPASFSEVVGQEHVTEPLSTALDAGRINHAY----LFSGPRGCGKTSSARILAR 57

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            L      TS P       +A       + DV  +D      +     + +   Y   E 
Sbjct: 58  SLNCVEGPTSTPCGQCPSCVALGPGGSGNLDVTELDAASHGGVDDTRELRDRAFYAPAES 117

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                +V E             + V+        I ATT    +   ++ R         
Sbjct: 118 RYRVFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSR-THHYPFRL 176

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                ++ ++++  +   + V D     +     G+PR +  +L ++   A    
Sbjct: 177 LAPATMRGLLEKICQQESVPVADPVYPLVIRAGGGSPRDSLSILDQLLAGAGDEG 231


>gi|320333407|ref|YP_004170118.1| DNA polymerase III subunits gamma and tau [Deinococcus maricopensis
           DSM 21211]
 gi|319754696|gb|ADV66453.1| DNA polymerase III, subunits gamma and tau [Deinococcus
           maricopensis DSM 21211]
          Length = 772

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 51/253 (20%), Positives = 81/253 (32%), Gaps = 50/253 (19%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV-- 80
           RP   +E  GQ      L+  +EA +         LF GP G+GKTT A+++A       
Sbjct: 9   RPIHWDEVVGQEHVKDVLRAALEAGRVGHAY----LFSGPRGVGKTTTARLIAMTANCTG 64

Query: 81  ---------------------NFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDE 113
                                +             D+  L   +        + +  +DE
Sbjct: 65  PDPKPCGTCPSCLEVRAGSHPDVLEIDAASNNSVDDVRELREKVGLAAMRGGKKIYILDE 124

Query: 114 IHRLSIIVEEILYPAMED---FQLDLMVGEGPSARSVKI----NLSRFTLIAATTRVGLL 166
            H +S      L   +E+     + ++    P      I       RF  +  T   G L
Sbjct: 125 AHMMSRAAFNALLKTLEEPPAHVIFILATTEPEKVLPTIMSRCQHYRFRRLTDTEIAGKL 184

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTI--VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGR 224
           T  + +R G+       + E L  I  +  GA   G ++ +         +R     A  
Sbjct: 185 TG-IAEREGVRA-----QPEALALIGRLADGAMRDGESLLERMLAAGTNVTRAGVEAALG 238

Query: 225 LL--RRVRDFAEV 235
           L    RVRD A  
Sbjct: 239 LPPGERVRDMARA 251


>gi|54022248|ref|YP_116490.1| DNA polymerase III subunits gamma and tau [Nocardia farcinica IFM
           10152]
 gi|54013756|dbj|BAD55126.1| putative DNA polymerase III gamma subunit [Nocardia farcinica IFM
           10152]
          Length = 825

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 79/231 (34%), Gaps = 19/231 (8%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T  E  GQ      L   ++  +         LF GP G GKT+ A+++AR
Sbjct: 2   ALYRKYRPATFAEVVGQEHVTEPLSTALDTGRINHAY----LFSGPRGCGKTSSARILAR 57

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            L      TS P    A  +A       + DV+ +D      +     + +   Y   E 
Sbjct: 58  SLNCEQGPTSTPCGVCASCVALAPGGPGNLDVIELDAASHGGVDDTRELRDRAFYAPAES 117

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                +V E             + V+   +    I ATT    +   ++ R         
Sbjct: 118 RYRVFIVDEAHMVTTAGFNALLKIVEEPPAHLIFIFATTEPDKVLPTIRSR-THHYPFRL 176

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                ++ ++ R  +   + V +     +     G+PR +  +L ++   A
Sbjct: 177 LPPATMRGLLGRICEQEHVTVEEAVYPLVIRAGGGSPRDSLSVLDQLLAGA 227


>gi|332076145|gb|EGI86611.1| DNA polymerase III, subunits gamma and tau [Streptococcus
           pneumoniae GA41301]
          Length = 551

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 53/296 (17%), Positives = 90/296 (30%), Gaps = 58/296 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     R +   +  GQ      LK  +E      E + H  LF GP G GKT++A++ A
Sbjct: 4   ALYRKYRSQNFSQLVGQEVVAKTLKQAVE-----QEKISHAYLFSGPRGTGKTSVAKIFA 58

Query: 76  RELGVNFRS------------------------TSGPVIAKAGDLAALLTN------LED 105
           + +    +                                   ++  +         L  
Sbjct: 59  KAMNCPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLAR 118

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
             V  IDE+H LS      L   +E+                         I ATT +  
Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPT------------------QNVVFILATTELHK 160

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           +   +  R       +    + +K  +    +   ++   EA   IA R+ G  R A  +
Sbjct: 161 IPATILSRVQRFEFKSIKTQD-IKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSI 219

Query: 226 LRRVRDFAEVAHAKTITREIADAALLRLAIDKM--GFDQLDL-RYLTMIARNFGGG 278
           L +     +     T   E     +   A+D       Q D+ + L+ +   F  G
Sbjct: 220 LDQALSLTQGNELTTAISEEITGTISLSALDDYVAALSQQDVPKALSCLNLLFDNG 275


>gi|329765879|ref|ZP_08257445.1| replication factor C [Candidatus Nitrosoarchaeum limnia SFB1]
 gi|329137722|gb|EGG41992.1| replication factor C [Candidatus Nitrosoarchaeum limnia SFB1]
          Length = 315

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 52/256 (20%), Positives = 82/256 (32%), Gaps = 36/256 (14%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR- 76
            +   RP  L E   Q E   +L+  I         + H++F G  G+GKTT A  +AR 
Sbjct: 7   WVEKYRPTKLSEIVNQTEIIGSLEALI----KDPTDMPHLMFSGSAGVGKTTTALCIARQ 62

Query: 77  -----------ELGVNFRSTSGPVIAKAGDLAALLTNLE-DRDVLFIDEIHRLSIIVEEI 124
                      EL  +     G V  K    +      E    ++ +DE   ++   +  
Sbjct: 63  ILGEYAKDYTLELNASDERGIGMVREKVKKFSRFAGMAEVPFKIIILDEADEMTADAQTA 122

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           L   +ED                     RF LIA    +  + +P+Q R     +     
Sbjct: 123 LRRIIED----------------TAKYCRFILIA--NNISKIIDPIQSRCA-TFKFTSIP 163

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            ED+   ++  +K   +    +    I   S G  R A  LL+      EV         
Sbjct: 164 QEDVINHLESISKKEKIKSDKKGLKAIYDYSEGDLRHAINLLQATASLGEVTEENVKASA 223

Query: 245 IADAALLRLAIDKMGF 260
                     + KM  
Sbjct: 224 GLTKTSDVDEVLKMAL 239


>gi|221124330|ref|XP_002162346.1| PREDICTED: similar to Werner helicase interacting protein [Hydra
           magnipapillata]
          Length = 342

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/271 (16%), Positives = 83/271 (30%), Gaps = 73/271 (26%)

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNL--------EDRDVLFIDEIHRLSIIVEEIL 125
           +A      F + S  V+    ++   +           + R ++F+DE+HR +   +   
Sbjct: 1   MADAFDAQFITISA-VLGGIKEIREAVDQALNARDGLEQRRTIIFVDEVHRFNKSQQ--- 56

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
                                                   + + L  R  + + L   + 
Sbjct: 57  ----------------------------------------VNSALLSRAAVYV-LQPLDA 75

Query: 186 EDLKTIVQRGAKLTGLAVTDEAA-CEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           + LK IV +      L   +  A   +   + G  R     L  +   A    A     E
Sbjct: 76  DSLKKIVLKAQTEYALPAIESIAIDRLIAYADGDARRLLNTLETLAIAARQEQAP----E 131

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           I DA LL++  ++             + R   GG    +TISA     R +  +    + 
Sbjct: 132 ITDAWLLKVLGER-------------MRRYDKGGEQFYDTISALHKSVRGSDPNASLYWF 178

Query: 305 IQQGFIQRTPR--GRLLMPIAWQHLGIDIPH 333
            +       PR   R  + +A + +G+  P 
Sbjct: 179 TRMLDGGADPRYMARRFIRMAAEDIGLADPR 209


>gi|148984597|ref|ZP_01817865.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae
           SP3-BS71]
 gi|149026346|ref|ZP_01836501.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae
           SP23-BS72]
 gi|225856531|ref|YP_002738042.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae
           P1031]
 gi|307067463|ref|YP_003876429.1| DNA polymerase III subunits gamma/tau [Streptococcus pneumoniae
           AP200]
 gi|147922988|gb|EDK74103.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae
           SP3-BS71]
 gi|147929308|gb|EDK80307.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae
           SP23-BS72]
 gi|225724656|gb|ACO20508.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae
           P1031]
 gi|301799858|emb|CBW32433.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae
           OXC141]
 gi|306409000|gb|ADM84427.1| DNA polymerase III, gamma/tau subunits [Streptococcus pneumoniae
           AP200]
          Length = 551

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 53/296 (17%), Positives = 90/296 (30%), Gaps = 58/296 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     R +   +  GQ      LK  +E      E + H  LF GP G GKT++A++ A
Sbjct: 4   ALYRKYRSQNFSQLVGQEVVAKTLKQAVE-----QEKISHAYLFSGPRGTGKTSVAKIFA 58

Query: 76  RELGVNFRS------------------------TSGPVIAKAGDLAALLTN------LED 105
           + +    +                                   ++  +         L  
Sbjct: 59  KAMNCPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLAR 118

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
             V  IDE+H LS      L   +E+                         I ATT +  
Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPT------------------QNVVFILATTELHK 160

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           +   +  R       +    + +K  +    +   ++   EA   IA R+ G  R A  +
Sbjct: 161 IPATILSRVQRFEFKSIKTQD-IKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSI 219

Query: 226 LRRVRDFAEVAHAKTITREIADAALLRLAIDKM--GFDQLDL-RYLTMIARNFGGG 278
           L +     +     T   E     +   A+D       Q D+ + L+ +   F  G
Sbjct: 220 LDQALSLTQGNELTTAISEEITGTISLSALDDYVAALSQQDVPKALSCLNLLFDNG 275


>gi|90962203|ref|YP_536119.1| DNA polymerase III subunit gamma/tau [Lactobacillus salivarius
           UCC118]
 gi|90821397|gb|ABE00036.1| DNA polymerase III subunit gamma/tau [Lactobacillus salivarius
           UCC118]
          Length = 579

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 77/226 (34%), Gaps = 21/226 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+   +  GQ      LK  I       +     LF GP G GKT+ A++ A+ +   F
Sbjct: 11  RPQRFMDLVGQEMVTKTLKNAI----ITHQTSHAYLFTGPRGTGKTSAAKIFAKAINCRF 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P      +    +T     DV+ ID      +  +  I +++ Y   E      +
Sbjct: 67  SKEGEPCNEC--ETCKAITEGRLNDVIEIDAASNNGVEEIRDIRDKVKYAPTEADYKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++   +    I ATT    +   +  R            E +
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPANVVFILATTEPHKIPATIISRTQ-RFDFKRITAESI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
              +        +   D+A   IA  + G  R A  LL +V  F +
Sbjct: 184 LQRMIYILDQKNVDYDDKALKVIAKAAEGGMRDALSLLDQVISFGD 229


>gi|331003026|ref|ZP_08326538.1| hypothetical protein HMPREF0491_01400 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330413070|gb|EGG92445.1| hypothetical protein HMPREF0491_01400 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 516

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 87/233 (37%), Gaps = 23/233 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     RP   +E  GQ      LK  ++  +     + H  LF G  G GKT++A+++A
Sbjct: 5   ALYRKFRPSNFDEVIGQEAITRTLKNQLKTGR-----ISHAYLFCGTRGTGKTSIAKIMA 59

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAME 130
           R L     + +GP   +     ++L+      V+ ID      +  +  I E++ YP   
Sbjct: 60  RALNCEHPTDAGP-CNECPTCKSILSETSIN-VVEIDAASNNGVDNIRDIKEQVQYPPTF 117

Query: 131 DFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
                 ++ E             ++++   S    I ATT V  +   +  R        
Sbjct: 118 GKYKVFIIDEVHMLSTGAFNALLKTLEEPPSYVIFILATTEVHKIPVTVLSRCQRYDFKR 177

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
              I+ +   ++      G+ + D A   IA  + G  R A  LL     F +
Sbjct: 178 I-GIDTITQRLKTLCNSEGVDIEDRALYYIAKTADGAMRDALSLLDECISFLQ 229


>gi|309390266|gb|ADO78146.1| DNA polymerase III, subunits gamma and tau [Halanaerobium
           praevalens DSM 2228]
          Length = 661

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/212 (19%), Positives = 69/212 (32%), Gaps = 41/212 (19%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
              RP    +  GQ +    LK  ++  +         LF GP G GKT+ A+V A+ L 
Sbjct: 8   RKYRPENFNDLIGQDQVKQTLKNALKNDRVAHAY----LFAGPRGTGKTSAAKVFAKSLN 63

Query: 80  V-------------------------NFRSTSGPVIAKAGDLAALLTNLE------DRDV 108
                                     +             ++  L   ++         V
Sbjct: 64  CANPTADFEPCGECNSCQRIEKGNSLDVIEIDAASNRGIDEIRELREKVKFYPGEGKYKV 123

Query: 109 LFIDEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
             IDE+H L+      L   +E+    +  ++      + +   +SR      +     L
Sbjct: 124 YIIDEVHMLTKGAFNALLKTLEEPPDSVVFILATTEPHKVITTIISRCQRFDFSLLT--L 181

Query: 167 TNPLQDRFGIPIRLNFYEIEDLK-TIVQRGAK 197
           TN L+ R     +   YEIE     I+ R A+
Sbjct: 182 TN-LKKRLAYIAQAEGYEIEKEALDILARSAR 212


>gi|307127584|ref|YP_003879615.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae
           670-6B]
 gi|306484646|gb|ADM91515.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae
           670-6B]
 gi|332077278|gb|EGI87740.1| DNA polymerase III, subunits gamma and tau [Streptococcus
           pneumoniae GA17545]
          Length = 551

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 53/296 (17%), Positives = 90/296 (30%), Gaps = 58/296 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     R +   +  GQ      LK  +E      E + H  LF GP G GKT++A++ A
Sbjct: 4   ALYRKYRSQNFSQLVGQEVVAKTLKQAVE-----QEKISHAYLFSGPRGTGKTSVAKIFA 58

Query: 76  RELGVNFRS------------------------TSGPVIAKAGDLAALLTN------LED 105
           + +    +                                   ++  +         L  
Sbjct: 59  KAMNCPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLAR 118

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
             V  IDE+H LS      L   +E+                         I ATT +  
Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPT------------------QNVVFILATTELHK 160

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           +   +  R       +    + +K  +    +   ++   EA   IA R+ G  R A  +
Sbjct: 161 IPATILSRVQRFEFKSIKTQD-IKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSI 219

Query: 226 LRRVRDFAEVAHAKTITREIADAALLRLAIDKM--GFDQLDL-RYLTMIARNFGGG 278
           L +     +     T   E     +   A+D       Q D+ + L+ +   F  G
Sbjct: 220 LDQALSLTQGNELTTAISEEITGTISLSALDDYVAALSQQDVPKALSCLNLLFDNG 275


>gi|298482983|ref|ZP_07001165.1| DNA polymerase III, gamma and tau subunits [Bacteroides sp. D22]
 gi|298270955|gb|EFI12534.1| DNA polymerase III, gamma and tau subunits [Bacteroides sp. D22]
          Length = 621

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 76/228 (33%), Gaps = 20/228 (8%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T E   GQ    + LK  I   K         LF GP G+GKTT A++ A+ +
Sbjct: 8   ARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAY----LFCGPRGVGKTTCARIFAKTI 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL-----YPAMEDFQ 133
                +  G    +     A        ++  +D     S+     L      P      
Sbjct: 64  NCMTPTADGEACNQCESCVA-FNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKY 122

Query: 134 LDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
              ++ E             ++++        I ATT    +   +  R  I    N   
Sbjct: 123 KVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQI-YDFNRIS 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           +ED    +   A   G+    EA   IAM++ G  R A  +  +V  F
Sbjct: 182 VEDTVNHLSYVASKEGITAEPEALNVIAMKADGGMRDALSIFDQVVSF 229


>gi|240128297|ref|ZP_04740958.1| DNA polymerase III subunits gamma and tau [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268686694|ref|ZP_06153556.1| DNA polymerase III tau and gamma subunit [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268626978|gb|EEZ59378.1| DNA polymerase III tau and gamma subunit [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 707

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 49/303 (16%), Positives = 89/303 (29%), Gaps = 63/303 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T  +  GQ      L+  ++  +     L H  L  G  G+GKTT+A+++A+ L   
Sbjct: 11  RPKTFSDLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCE 65

Query: 82  FRS------------------------TSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                                ++  +L N +         V  I
Sbjct: 66  NAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYII 125

Query: 112 DEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+H LS      +   +E+    +  ++      +     LSR                
Sbjct: 126 DEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNM------- 178

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
                           + +   +        +A    A   +   + G+ R A  LL + 
Sbjct: 179 --------------TAQQVADHLAHVLDSEKIAYDPPALQLLGRAAAGSMRDALSLLDQA 224

Query: 230 RDFAEVAHAKTITREIADAALLRLAIDKM-GFDQLDLRYLTMIARNFGGGPVGIETISAG 288
                   A+   R++  A   +   + + G    D   L   A+      VG +     
Sbjct: 225 IALGSGKVAENDVRQMIGAVDKQYLYELLTGIVNQDGEALLAKAQEMAACAVGFDN---A 281

Query: 289 LSE 291
           L E
Sbjct: 282 LGE 284


>gi|148927687|ref|ZP_01811136.1| DNA polymerase III, subunits gamma and tau [candidate division TM7
           genomosp. GTL1]
 gi|147886962|gb|EDK72483.1| DNA polymerase III, subunits gamma and tau [candidate division TM7
           genomosp. GTL1]
          Length = 454

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 50/250 (20%), Positives = 87/250 (34%), Gaps = 42/250 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     R RTL+E  GQ      L   ++  +         LF GP G GKT++A+++A 
Sbjct: 4   ALYRKYRSRTLDEVVGQKHITDVLLKALQHKRIGHA----FLFTGPRGTGKTSIARILAH 59

Query: 77  ELGV----------NFRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSII 120
            +            +          +  D+  L   +          V  IDE+H L+  
Sbjct: 60  AINDLPYENDSLHLDIVEIDAASNRRIDDIRDLREKVHIAPTSAPFKVYIIDEVHMLTGE 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
               L   +E+          P A  V I         ATT    L   +  R       
Sbjct: 120 SFNALLKTLEE----------PPAHVVFIL--------ATTEAHKLPATIVSRTQ-RFHF 160

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
                 ++   +   A+   + + ++A   IA    G+ R +  LL ++     VA  + 
Sbjct: 161 RLIPEAEVAKHLSHIAEQENIKIDEDALELIAEHGEGSFRDSISLLDQL---GSVAGDEH 217

Query: 241 ITREIADAAL 250
           +T ++ ++ L
Sbjct: 218 VTAKMIESTL 227


>gi|20808395|ref|NP_623566.1| ATP-dependent Zn protease [Thermoanaerobacter tengcongensis MB4]
 gi|254479371|ref|ZP_05092706.1| ATP-dependent metallopeptidase HflB subfamily protein
           [Carboxydibrachium pacificum DSM 12653]
 gi|20517008|gb|AAM25170.1| ATP-dependent Zn proteases [Thermoanaerobacter tengcongensis MB4]
 gi|214034684|gb|EEB75423.1| ATP-dependent metallopeptidase HflB subfamily protein
           [Carboxydibrachium pacificum DSM 12653]
          Length = 510

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 56/244 (22%), Positives = 88/244 (36%), Gaps = 22/244 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAA-------KARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  E    LKV I+         K  A+    +LF GPPG GKT LA  +A E 
Sbjct: 82  TFKDVAGLDEVIEELKVIIDFMTNTEKYNKMGAKIPKGILFYGPPGTGKTLLATALAGET 141

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAME 130
              F S SG           A  + AL    +     ++FIDEI  +          + +
Sbjct: 142 NSTFISASGSEFVEKYVGVGASRIRALFAKAKKNAPSIIFIDEIDAVGTKRNTD-NNSEK 200

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
           D  L+ ++ E     S +       +I AT R+ +L   L    RF   I +    ++  
Sbjct: 201 DQTLNQLLVEMDGFNSNEG----IIVIGATNRIDMLDEALLRPGRFDRTIHIGPPNLKGR 256

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             I++   +   L  +             T      +       A + +   I +E  + 
Sbjct: 257 LEILKVHTRNKPLDESVSLVDLARKTHGMTGAHLATMCNEAAILAVMRNKTKIGKEEFEE 316

Query: 249 ALLR 252
           AL R
Sbjct: 317 ALER 320


>gi|332967844|gb|EGK06943.1| DNA polymerase III, gamma/tau subunit DnaX [Kingella kingae ATCC
           23330]
          Length = 609

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 47/296 (15%), Positives = 89/296 (30%), Gaps = 60/296 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T  +  GQ      L+  ++  +     L H  L  G  G+GKTT+A+++A+ L   
Sbjct: 26  RPKTFADLVGQQHVVKALQNALDKGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCE 80

Query: 82  F------------------------RSTSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                                ++  +L N +         V  I
Sbjct: 81  NTLHGDPCGQCQTCCDIDAGRFVDLLEIDAASNTGIDNIREVLENAQYAPTVGKYKVYII 140

Query: 112 DEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+H LS      +   +E+    +  ++      +     LSR                
Sbjct: 141 DEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPITVLSRCLQFVLRNM------- 193

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
                           + +   +    K   +     A   +   + G+ R A  LL + 
Sbjct: 194 --------------TPQQVTDHLTHVLKTEQIMYEPNALALLGRAANGSMRDALSLLDQA 239

Query: 230 RDFAEVAHAKTITREIADAALLRLAIDKMGF-DQLDLRYLTMIARNFGGGPVGIET 284
                    +   R++  A   R   D + F  + D   L + A+      +G ++
Sbjct: 240 IAMGSGGVKELDVRQMIGAVDKRYLYDLLTFLMEQDGERLLVKAQEMAANAIGFDS 295


>gi|313497891|gb|ADR59257.1| DnaX [Pseudomonas putida BIRD-1]
          Length = 689

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 65/327 (19%), Positives = 96/327 (29%), Gaps = 65/327 (19%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPR+  E  GQ      LK  I A     + L H  LF G  G+GKTT+A+++A+ L   
Sbjct: 11  RPRSFREMVGQTHV---LKALINA--LDNQRLHHAYLFTGTRGVGKTTIARIIAKCLNCE 65

Query: 82  FRSTS------------------------GPVIAKAGDLAALLTNLE------DRDVLFI 111
              TS                             K  D   LL N++         V  I
Sbjct: 66  TGITSTPCGTCSVCREIDEGRFVDLIEIDAASRTKVEDTRELLDNVQYAPSRGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         I ATT    L   + 
Sbjct: 126 DEVHMLSTHSFNALLKTLEE------------------PPPYVKFILATTDPQKLPATIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L     E +   +        +   ++A   +   + G+ R A  L     D
Sbjct: 168 SRC-LQFSLKNMSPERVVEHLSHVLAAENVPFEEDALWLLGRAADGSMRDAMSL----TD 222

Query: 232 FAEVAHAKTITREIADAALLRLAIDK-MG-----FDQLDLRYLTMIARNFGGGPVGIETI 285
            A       +      A L  L   +  G      +      L  +      GP     +
Sbjct: 223 QAIAFGEGKVLAADVRAMLGSLDHGQVYGVLQALLEGDARALLEAVRNLAEQGPDWSGVL 282

Query: 286 SAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           +  L+           P  +  G   R
Sbjct: 283 AEMLNVLHRVAIAQALPEAVDNGQGDR 309


>gi|297624591|ref|YP_003706025.1| DNA polymerase III subunits gamma and tau [Truepera radiovictrix
           DSM 17093]
 gi|297165771|gb|ADI15482.1| DNA polymerase III, subunits gamma and tau [Truepera radiovictrix
           DSM 17093]
          Length = 522

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 51/236 (21%), Positives = 73/236 (30%), Gaps = 53/236 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV-- 80
           RP T  +  GQ    + L    +AA A+       LF GP G+GKTT A+++A  +    
Sbjct: 9   RPITFAQVVGQEHVKAPL----QAALAKGRVGHAYLFSGPRGVGKTTTARLLAMAVNCEG 64

Query: 81  -----------------------NFRSTSGPVIAKAGDLAALLTNL---EDRDVLFIDEI 114
                                     + S   +    DL   +        R V  +DE 
Sbjct: 65  EDRPCGACESCLLVRRGAHPDVTELDAASNNSVEDIRDLREKVRLASLRGGRRVWVLDEA 124

Query: 115 HRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRF 174
           H LS      L   +E+    L+                   I ATT    L   +  R 
Sbjct: 125 HMLSKSASNALLKTLEEPPEGLV------------------FILATTEPEKLPPTILSRT 166

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMR-SRGTPRIAGRLLRRV 229
                    E E    +  R          +E A  +  R + G  R A  LL R+
Sbjct: 167 QHFRFRRLSEAEIASKL--RALCHEAGVSAEEGALALVARAADGAMRDAESLLERL 220


>gi|295087965|emb|CBK69488.1| DNA polymerase III, tau subunit [Bacteroides xylanisolvens XB1A]
          Length = 621

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 76/228 (33%), Gaps = 20/228 (8%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T E   GQ    + LK  I   K         LF GP G+GKTT A++ A+ +
Sbjct: 8   ARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAY----LFCGPRGVGKTTCARIFAKTI 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL-----YPAMEDFQ 133
                +  G    +     A        ++  +D     S+     L      P      
Sbjct: 64  NCMTPTADGEACNQCESCVA-FNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKY 122

Query: 134 LDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
              ++ E             ++++        I ATT    +   +  R  I    N   
Sbjct: 123 KVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQI-YDFNRIS 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           +ED    +   A   G+    EA   IAM++ G  R A  +  +V  F
Sbjct: 182 VEDTVNHLSYVASKEGITAEPEALNVIAMKADGGMRDALSIFDQVVSF 229


>gi|283850684|ref|ZP_06367971.1| DNA polymerase III, subunits gamma and tau [Desulfovibrio sp.
           FW1012B]
 gi|283573927|gb|EFC21900.1| DNA polymerase III, subunits gamma and tau [Desulfovibrio sp.
           FW1012B]
          Length = 580

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 86/234 (36%), Gaps = 27/234 (11%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +  RP+   +  GQ       ++   AA A  +     LF G  G+GKTTLA+V+A+ L 
Sbjct: 8   AKYRPQRFADVAGQEAVK---RILSRAA-AEDKIAPAYLFSGTRGVGKTTLARVLAKALN 63

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQL 134
               + +            +   +   DV+ ID     ++     + E++ Y  +     
Sbjct: 64  CET-APTAEPCNVCSQCRQITAGVSP-DVIEIDAATHGKVDDARRLKEDVGYAPLNSRYK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             ++ E             ++++   +R T I ATT        +  R    +     + 
Sbjct: 122 VFIIDEAHMLTMQAFNALLKTLEEPPARVTFILATTEPHKFPATIISRCQHFLFKRLAQP 181

Query: 186 E---DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
           E    L  ++ R A    +    +A   IA R  G+ R +  LL +V      A
Sbjct: 182 ELEAHLGGLLDREA----VPFESKAVSLIARRGAGSVRDSMSLLAQVLALGGAA 231


>gi|260800650|ref|XP_002595211.1| hypothetical protein BRAFLDRAFT_284971 [Branchiostoma floridae]
 gi|229280455|gb|EEN51223.1| hypothetical protein BRAFLDRAFT_284971 [Branchiostoma floridae]
          Length = 364

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 82/243 (33%), Gaps = 46/243 (18%)

Query: 9   SRNVSQEDAD-ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           S+   Q +A  +   RPRT+++   Q E  + LK  ++ A      L ++L  GPPG GK
Sbjct: 29  SKERRQPNAPWVEKYRPRTVDDVAFQEEVVAVLKKSLQGAD-----LPNLLLYGPPGTGK 83

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAAL------------LTNLEDRD-------- 107
           T+     AREL          +   A D   +            L+    R         
Sbjct: 84  TSTILAAARELFGADLMKQRVLELNASDERGIQVVRDKVKTFSQLSASGTRPDGRPCPPF 143

Query: 108 -VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
            ++ +DE   ++   +  L   ME                     +RF        +  +
Sbjct: 144 KIVILDEADSMTNPAQASLRRTMEKETKT----------------TRF--CLICNYISRI 185

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
             PL  R     R      + L+  ++  A+   +   D+A   +   S G  R A   L
Sbjct: 186 IEPLASRCA-KFRFKPLSSDILQKRLRHIAEAEKVNAEDKAITALIDTSEGDLRKAITYL 244

Query: 227 RRV 229
           +  
Sbjct: 245 QSA 247


>gi|329666789|gb|AEB92737.1| DNA polymerase III subunit gamma/tau [Lactobacillus johnsonii DPC
           6026]
          Length = 602

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 80/228 (35%), Gaps = 21/228 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPRT +   GQ      LK  I     R +     LF GP G GKT+ A++ A+ L    
Sbjct: 11  RPRTFDGVVGQTAITDTLKNAI----KRGKISHAFLFAGPRGTGKTSCAKIFAKALNCTN 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P       LAA    +   D++ ID      +  +  I +++ Y   +      +
Sbjct: 67  LQDGEPCNECENCLAADQGTM--NDIIEIDAASNNGVDEIRDIRDKVKYAPTQGKYKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT +  +   +  R          + + +
Sbjct: 125 IDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRIDQHDLI 184

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
              +        +   ++A   IA  + G  R +  +L ++  + +  
Sbjct: 185 AR-MTYILDQEKIDFEEKALEVIAQVADGGMRDSLSILDQILSYDQDK 231


>gi|256841270|ref|ZP_05546777.1| DNA polymerase III subunit gamma/tau [Parabacteroides sp. D13]
 gi|256737113|gb|EEU50440.1| DNA polymerase III subunit gamma/tau [Parabacteroides sp. D13]
          Length = 601

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 80/228 (35%), Gaps = 20/228 (8%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T     GQ    + LK  I++ K         LF GP G+GKT+ A++ A+ +
Sbjct: 23  ARKYRPSTFRSVVGQKSLTTTLKNAIQSNKLAHAY----LFCGPRGVGKTSCARIFAKTI 78

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI------IVEEILYPAMEDF 132
                +  G          A        ++  +D     S+      I +  + P +  +
Sbjct: 79  NCLNPTADGEACNACESCRA-FNEQRSYNIHELDAASNNSVDDIRTLIDQVRIPPPIGKY 137

Query: 133 QLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           ++ ++               ++++        I ATT    +   +  R  I        
Sbjct: 138 KVFIIDEVHMLTTAAFNAFLKTLEEPPHHALFILATTEKHKVLPTILSRCQIYDFSRI-S 196

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           I D+   +Q  +   G+    EA   IA ++ G  R A  +  +V  F
Sbjct: 197 IADMVEHLQYVSSQEGVTAEPEALNVIAQKADGGMRDALSIFDQVVSF 244


>gi|222093792|ref|YP_002527840.1| DNA polymerase iii subunits gamma and tau [Bacillus cereus Q1]
 gi|221237838|gb|ACM10548.1| dna polymerase iii, gamma and tau subunits [Bacillus cereus Q1]
          Length = 504

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 69/209 (33%), Gaps = 42/209 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+  E+  GQ      L+  +       E + H  LF GP G GKTT+A+V A+ +   
Sbjct: 11  RPQKFEDVVGQKHVTKTLQNAL-----LQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCE 65

Query: 82  F------------------------RSTSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                                ++  +   ++      +  V  I
Sbjct: 66  HAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKVYII 125

Query: 112 DEIHRLSIIVEEILYPAMED--FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+H LS+     L   +E+    +  ++      +     +SR              N 
Sbjct: 126 DEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKIS---VND 182

Query: 170 LQDRFGIPIRLNFYEIEDLK-TIVQRGAK 197
           + +R    +     ++ED    IV R A+
Sbjct: 183 IVERLSTVVNNEGTQVEDEALQIVARAAE 211


>gi|254462224|ref|ZP_05075640.1| DNA polymerase III, gamma and tau subunit [Rhodobacterales
           bacterium HTCC2083]
 gi|206678813|gb|EDZ43300.1| DNA polymerase III, gamma and tau subunit [Rhodobacteraceae
           bacterium HTCC2083]
          Length = 583

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 67/300 (22%), Positives = 109/300 (36%), Gaps = 31/300 (10%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T  +  GQ      LK   EA +         +  G  G GKTT A+++A+ +
Sbjct: 13  ARKYRPETFADLVGQEAMVRTLKNAFEADRIAQA----FVMTGIRGTGKTTTARIIAKGI 68

Query: 79  GV-NFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSI-----IVEEILYPAME 130
                  T GP     G     +  +E R  DV+ +D   R  +     I+E + Y A  
Sbjct: 69  NCIGPDGTGGPTTEPCGVCENCVAIMEGRHVDVMEMDAASRTGVGDIREIIESVHYRAAS 128

Query: 131 DFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
                 ++ E             ++++   +    I ATT +  +   +  R      L 
Sbjct: 129 ARYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLSRCQ-RFDLR 187

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
             E ED+  ++QR A      + ++A   I   + G+ R A  LL    D A    A   
Sbjct: 188 RIEPEDMIGMLQRIAAGEHAEIAEDALALITRAAEGSARDATSLL----DQAISHGAGET 243

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T E   A L      ++    LDL Y  ++  +       +    A  ++P   + DL E
Sbjct: 244 TVEQVRAMLGLADRGRV----LDL-YQMIMRGDAAAALTELGEQYAAGADPMAVLRDLAE 298


>gi|256826358|ref|YP_003150318.1| DNA polymerase III, subunit gamma/tau [Kytococcus sedentarius DSM
           20547]
 gi|256689751|gb|ACV07553.1| DNA polymerase III, subunit gamma/tau [Kytococcus sedentarius DSM
           20547]
          Length = 796

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 66/199 (33%), Gaps = 29/199 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP+   E  GQ      L+  +   +         LF GP G GKTT A+++AR
Sbjct: 4   ALYRRYRPQNFSEVVGQEHVTGPLQQALRTGRVNHAY----LFSGPRGCGKTTSARILAR 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR----DVLFIDEIHRLSII------VEEILY 126
            L        GP  +  G+  +            DV+ ID      +        +    
Sbjct: 60  CLNCE----QGPTDSPCGECDSCQDLARGGAGSVDVIEIDAASHGGVDDARDLREKASFG 115

Query: 127 PAMEDFQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR---FG 175
           PA   +++ ++         G     + V+        I ATT    +   ++ R   + 
Sbjct: 116 PAQSRYKVYIIDEAHMVTSAGFNALLKIVEEPPEHVLFIFATTEPEKVIGTIRSRTHHYP 175

Query: 176 IPIRLNFYEIEDLKTIVQR 194
             +       E L  + +R
Sbjct: 176 FRLVPPAVLQEYLAQVCER 194


>gi|225181513|ref|ZP_03734955.1| DNA polymerase III, subunits gamma and tau [Dethiobacter
           alkaliphilus AHT 1]
 gi|225167761|gb|EEG76570.1| DNA polymerase III, subunits gamma and tau [Dethiobacter
           alkaliphilus AHT 1]
          Length = 525

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 56/251 (22%), Positives = 96/251 (38%), Gaps = 31/251 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+   +  GQ      L+  +E      + L H  LF GP G GKT+ A+++A+ +   
Sbjct: 10  RPQFFADMVGQQHVARTLQNALE-----QDRLAHAYLFCGPRGTGKTSAAKILAKAINCE 64

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR--DVLFID-----EIHRLSIIVEEILYPAMEDFQL 134
                GP      + AA       R  DV  ID      I  +  + E+  Y  +E    
Sbjct: 65  K----GPSREPCNECAACRGIQAGRVMDVQEIDAASNRGIDEIRELREKARYSPVEVRHK 120

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             +V E             ++++    R   + ATT    L   +  R    +  +   +
Sbjct: 121 VYIVDEVHMLTQEAFNALLKTLEEPPGRVLFVLATTEPHKLPATIISRCQ-RLDFHLIGM 179

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
            D+   ++     +G ++ D+A   IA  + G  R A  LL ++  ++E      I+ E 
Sbjct: 180 TDIAERLRSVVDDSGRSIQDDALYLIAEEAAGGLRDALSLLEQIMAYSE----GNISDED 235

Query: 246 ADAALLRLAID 256
             A L  +  D
Sbjct: 236 VLAVLGAVGRD 246


>gi|123493043|ref|XP_001326199.1| ATPase, AAA family protein [Trichomonas vaginalis G3]
 gi|121909110|gb|EAY13976.1| ATPase, AAA family protein [Trichomonas vaginalis G3]
          Length = 325

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 60/154 (38%), Gaps = 21/154 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+ L++   Q EA   LK  +E        L H++F GPPG GKT+LA  + R
Sbjct: 9   PWVEKYRPKNLDDIVQQEEAVKALKTTLETGD-----LPHLIFHGPPGTGKTSLALALCR 63

Query: 77  ------------ELGVNFRSTSGPVIAKAGDLAALLTNLED--RDVLFIDEIHRLSIIVE 122
                       EL  +       V +   + A+L          ++ +DE   ++   +
Sbjct: 64  SLFGEDFRLRVKELNASDERGIDAVRSSVKEFASLAVPNGKIPFKIVILDEADSMTSAAQ 123

Query: 123 EILYPAMEDFQLD--LMVGEGPSARSVKINLSRF 154
             L   +E +      ++     ++ +   LSR 
Sbjct: 124 NALRRIIETYSAVTRFIIICNYVSKIIDPILSRC 157


>gi|330945949|ref|XP_003306663.1| hypothetical protein PTT_19852 [Pyrenophora teres f. teres 0-1]
 gi|311315764|gb|EFQ85258.1| hypothetical protein PTT_19852 [Pyrenophora teres f. teres 0-1]
          Length = 353

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/242 (17%), Positives = 77/242 (31%), Gaps = 39/242 (16%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   +   RP  L++  G  E    LK+      A+   + H++  G PG+GKTT    +
Sbjct: 28  ELPWVEKYRPVYLDDVVGNTETIERLKII-----AKDGNMPHMIISGMPGIGKTTSILCL 82

Query: 75  AR-----ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDV---------LFIDEIHRLSII 120
           AR              +         +   +     + V         + +DE   ++  
Sbjct: 83  ARQLLGDAYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLAPGRQKLVILDEADSMTSG 142

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            ++ L   ME +                   +RF    A  +   +  PLQ R  I    
Sbjct: 143 AQQALRRTMEIYSAT----------------TRFAF--ACNQSNKIIEPLQSRCAILRYA 184

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA-GRLLRRVRDFAEVAHAK 239
              + + ++ I+Q   +   +  +D+    +   + G  R A   L      F  V    
Sbjct: 185 RLTDAQVVRRIMQ-IVEAEDVKYSDDGIAALVFSAEGDMRQAINNLQSTFAGFGFVNGDN 243

Query: 240 TI 241
             
Sbjct: 244 VF 245


>gi|239999003|ref|ZP_04718927.1| DNA polymerase III subunits gamma and tau [Neisseria gonorrhoeae
           35/02]
 gi|240014087|ref|ZP_04721000.1| DNA polymerase III subunits gamma and tau [Neisseria gonorrhoeae
           DGI18]
 gi|240016521|ref|ZP_04723061.1| DNA polymerase III subunits gamma and tau [Neisseria gonorrhoeae
           FA6140]
 gi|240080645|ref|ZP_04725188.1| DNA polymerase III subunits gamma and tau [Neisseria gonorrhoeae
           FA19]
 gi|240115744|ref|ZP_04729806.1| DNA polymerase III subunits gamma and tau [Neisseria gonorrhoeae
           PID18]
 gi|240121648|ref|ZP_04734610.1| DNA polymerase III subunits gamma and tau [Neisseria gonorrhoeae
           PID24-1]
 gi|268594851|ref|ZP_06129018.1| DNA polymerase III gamma and tau [Neisseria gonorrhoeae 35/02]
 gi|268596769|ref|ZP_06130936.1| DNA polymerase III gamma and tau [Neisseria gonorrhoeae FA19]
 gi|268601422|ref|ZP_06135589.1| DNA polymerase III tau and gamma subunit [Neisseria gonorrhoeae
           PID18]
 gi|293399027|ref|ZP_06643192.1| DNA polymerase III subunit gamma/tau [Neisseria gonorrhoeae F62]
 gi|268548240|gb|EEZ43658.1| DNA polymerase III gamma and tau [Neisseria gonorrhoeae 35/02]
 gi|268550557|gb|EEZ45576.1| DNA polymerase III gamma and tau [Neisseria gonorrhoeae FA19]
 gi|268585553|gb|EEZ50229.1| DNA polymerase III tau and gamma subunit [Neisseria gonorrhoeae
           PID18]
 gi|291610441|gb|EFF39551.1| DNA polymerase III subunit gamma/tau [Neisseria gonorrhoeae F62]
          Length = 707

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 49/303 (16%), Positives = 89/303 (29%), Gaps = 63/303 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T  +  GQ      L+  ++  +     L H  L  G  G+GKTT+A+++A+ L   
Sbjct: 11  RPKTFSDLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCE 65

Query: 82  FRS------------------------TSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                                ++  +L N +         V  I
Sbjct: 66  NAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYII 125

Query: 112 DEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+H LS      +   +E+    +  ++      +     LSR                
Sbjct: 126 DEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNM------- 178

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
                           + +   +        +A    A   +   + G+ R A  LL + 
Sbjct: 179 --------------TAQQVADHLAHVLDSEKIAYDPPALQLLGRAAAGSMRDALSLLDQA 224

Query: 230 RDFAEVAHAKTITREIADAALLRLAIDKM-GFDQLDLRYLTMIARNFGGGPVGIETISAG 288
                   A+   R++  A   +   + + G    D   L   A+      VG +     
Sbjct: 225 IALGSGKVAENDVRQMIGAVDKQYLYELLTGIVNQDGEALLAKAQEMAACAVGFDN---A 281

Query: 289 LSE 291
           L E
Sbjct: 282 LGE 284


>gi|332023241|gb|EGI63497.1| Replication factor C subunit 5 [Acromyrmex echinatior]
          Length = 327

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 67/199 (33%), Gaps = 29/199 (14%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           + S N       +   RP++L+E          +  +I+        L H+L  GPPG G
Sbjct: 1   MTSSNAQVNLPWVEKYRPKSLDELISHETIIKTINKYID-----ENQLPHLLLYGPPGTG 55

Query: 67  KTTLAQVVAR------ELGVNFRSTSGPVIAKAGDLA-ALLTNLEDRD-------VLFID 112
           KT+     AR      +        +       G +   +L+             ++ +D
Sbjct: 56  KTSTILACARKLYTPAQFNSMVLELNASDDRGIGIVRGQILSFASTGTMYKSAFKLIILD 115

Query: 113 EIHRLSIIVEEILYPAMEDFQ--LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           E   ++I  +  L   +E +   +   +     ++ +    SR T             PL
Sbjct: 116 EADAMTIDAQNALRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTRFRFL--------PL 167

Query: 171 QDRFGIPIRLNFYEIEDLK 189
                IP   +  E E+LK
Sbjct: 168 AAEQIIPRLNHVIEAENLK 186


>gi|227510687|ref|ZP_03940736.1| DNA polymerase III subunit gamma/tau [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227189808|gb|EEI69875.1| DNA polymerase III subunit gamma/tau [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 630

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 82/229 (35%), Gaps = 23/229 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+  +E  GQ      LK  I       + + H  LF GP G GKT+ A++ A+ +  +
Sbjct: 53  RPQRFDEIVGQSIITQTLKNAI-----LTKQISHAYLFTGPRGTGKTSAAKIFAKAVNCH 107

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDL 136
           +    G    K     A+       DV+ ID      +  +  I +++ Y   +      
Sbjct: 108 YLED-GEPCNKCETCRAINEG-SLSDVIEIDAASNNGVEEIRDIRDKVKYAPTKADYKVY 165

Query: 137 MVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ++ E             ++++   +    I ATT    +   +  R            ED
Sbjct: 166 IIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPATIISRTQ-KFDFKRIRPED 224

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
           +   +    K   +   D+A   IA  + G  R A  +L +   + +  
Sbjct: 225 ILERMAYILKQKNIEYDDKALKLIAKAAEGGMRDALSILDQAMSYGDDK 273


>gi|329938776|ref|ZP_08288172.1| DNA polymerase subunit [Streptomyces griseoaurantiacus M045]
 gi|329302267|gb|EGG46159.1| DNA polymerase subunit [Streptomyces griseoaurantiacus M045]
          Length = 813

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 55/309 (17%), Positives = 96/309 (31%), Gaps = 45/309 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP +  E  GQ      L+  +   +         LF GP G GKTT A+++AR
Sbjct: 5   ALYRRYRPESFAEVIGQEHVTDPLQQALRNNRVNHAY----LFSGPRGCGKTTSARILAR 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR----DVLFIDEIHRLSII------VEEILY 126
            L        GP     G+  +      +     DV+ ID      +        +    
Sbjct: 61  CLNCE----QGPTPTPCGECQSCRDLARNGPGSLDVIEIDAASHGGVDDARDLREKAFFG 116

Query: 127 PAMEDFQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
           PA   +++ ++         G     + V+        + ATT    +   ++ R     
Sbjct: 117 PASSRYKIYIIDEAHMVTPAGFNALLKVVEEPPEHLKFVFATTEPEKVIGTIRSR-THHY 175

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
                    L+  +    K   + V D     +     G+ R +  ++ ++   A     
Sbjct: 176 PFRLVPPGTLRDYLGEVCKQEDIPVEDGVLPLVVRAGAGSVRDSMSVMDQLLAGA----G 231

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVG-----IETISAGLSEPR 293
                     AL             D   L  +   F  G        ++ I  G ++PR
Sbjct: 232 DEGVTYAMATAL---------LGYTDSSLLDSVVEAFASGDGAAAFEVVDRIIEGGNDPR 282

Query: 294 DAIEDLIEP 302
             + DL+E 
Sbjct: 283 RFVTDLLER 291


>gi|194364635|ref|YP_002027245.1| DNA polymerase III subunits gamma and tau [Stenotrophomonas
           maltophilia R551-3]
 gi|194347439|gb|ACF50562.1| DNA polymerase III, subunits gamma and tau [Stenotrophomonas
           maltophilia R551-3]
          Length = 681

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/241 (17%), Positives = 74/241 (30%), Gaps = 53/241 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN- 81
           RP+   E  GQ      L   +++ +         LF G  G+GKTT+A++ A+ L    
Sbjct: 11  RPKRFAELVGQEHVVRALSNALDSGRVHHA----FLFTGTRGVGKTTIARIFAKSLNCEQ 66

Query: 82  -----------------------FRSTSGPVIAKAGDLAALLTNLE------DRDVLFID 112
                                               D+  ++ N +         V  ID
Sbjct: 67  GTSADPCGQCAACLDIDAGRYIDLLEIDAASNTGVDDVREVIENAQYMPSRGKYKVYLID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS      L   +E+                         + ATT    L   +  
Sbjct: 127 EVHMLSKAAFNALLKTLEE------------------PPEHVKFLLATTDPQKLPVTVLS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R  +   L   + + ++  + R      +     A  ++A  + G+ R    LL +   +
Sbjct: 169 RC-LQFNLKRLDEDQIQGQMTRILAAEEIEADGSALVQLAKAADGSLRDGLSLLDQAIAY 227

Query: 233 A 233
           A
Sbjct: 228 A 228


>gi|326482375|gb|EGE06385.1| DNA replication factor C subunit Rfc2 [Trichophyton equinum CBS
           127.97]
          Length = 386

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 49/269 (18%), Positives = 86/269 (31%), Gaps = 52/269 (19%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
            +  Q    +   RP+TL++ T Q    S L+  + A+      L H+LF G PG GKT+
Sbjct: 27  ESDQQAQPWVEKYRPKTLDDVTAQDHTISVLQRNLHAS-----NLPHMLFYGSPGTGKTS 81

Query: 70  LAQVVAR-------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD--------- 107
               +++             EL  +       V  K  D A +  +    D         
Sbjct: 82  TILAMSKSLFGPALVRSRVLELNASDERGINIVREKIKDFARMHLSQPPTDPAYRSQYPC 141

Query: 108 ----VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA-TTR 162
               ++ +DE   ++   +  L   ME +                   SR T        
Sbjct: 142 PPFKIIILDEADSMTHDAQSALRRTMEKY-------------------SRITRFCLVCNY 182

Query: 163 VGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
           V  + +P+  R     R    +    ++ +   A++  L + D     +   S G  R A
Sbjct: 183 VTRIIDPVASRCS-KFRFKVLDGSAAQSRLIEIARMEKLDLEDNVVETLLRCSDGDLRKA 241

Query: 223 GRLLRRVRDFAEVAHAKTITREIADAALL 251
              ++     A     K       +  L 
Sbjct: 242 ITFMQSSARLARYGSGKKKDSSDKEMELD 270


>gi|307708553|ref|ZP_07645018.1| DNA polymerase III gamma/tau subunit [Streptococcus mitis NCTC
           12261]
 gi|307615469|gb|EFN94677.1| DNA polymerase III gamma/tau subunit [Streptococcus mitis NCTC
           12261]
          Length = 551

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 53/296 (17%), Positives = 90/296 (30%), Gaps = 58/296 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     R +   +  GQ      LK  +E      E + H  LF GP G GKT++A++ A
Sbjct: 4   ALYRKYRSQNFSQLVGQEVVAKTLKQAVE-----QEKISHAYLFSGPRGTGKTSVAKIFA 58

Query: 76  RELGVNFRS------------------------TSGPVIAKAGDLAALLTN------LED 105
           + +    +                                   ++  +         L  
Sbjct: 59  KAMNCPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLAR 118

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
             V  IDE+H LS      L   +E+                         I ATT +  
Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPT------------------QNVVFILATTELHK 160

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           +   +  R       +    + +K  ++       ++   EA   IA R+ G  R A  +
Sbjct: 161 IPATILSRVQRFEFKSIKTQD-IKEHIRYILDKENISSEPEAVEIIARRAEGGMRDALSI 219

Query: 226 LRRVRDFAEVAHAKTITREIADAALLRLAIDKM--GFDQLDL-RYLTMIARNFGGG 278
           L +     +     T   E     +   A+D       Q D+ + L+ +   F  G
Sbjct: 220 LDQALSLTQGNELTTAISEEITGTISLSALDDYVAALSQQDVPKALSCLNLLFDNG 275


>gi|269467848|gb|EEZ79591.1| DNA polymerase III, gamma/tau subunit [uncultured SUP05 cluster
           bacterium]
          Length = 528

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 51/270 (18%), Positives = 86/270 (31%), Gaps = 59/270 (21%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH-VLFVGPPGLGKTTLAQVVARE 77
               RP T  E  GQ      L   ++A     ++L H  LF G  G+GKTT+A++ A+ 
Sbjct: 9   ARKYRPHTFSEMVGQTHTVKTLINALDA-----DSLHHAFLFTGTRGVGKTTIARIFAKS 63

Query: 78  LGVNFRSTS------------------------GPVIAKAGDLAALLTNLE------DRD 107
           +      +S                                ++  +L N +         
Sbjct: 64  INCEAGVSSKPCGKCPTCIEIDKGQSVDLIELDAASHTGVDNMRDILENAQYMPTKNRYK 123

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           +  IDE+H LS      L   +E+                         + ATT    L 
Sbjct: 124 IYLIDEVHMLSKSSFNALLKTLEE------------------PPEHIKFLLATTDPQKLP 165

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             +  R  +   L     E++   ++   +   L   + A  +IA    G+ R A  LL 
Sbjct: 166 VTVLSRC-LQFTLQKLTHEEILGQLKFIMEAEKLKYEELALSQIADFGYGSMRDALSLL- 223

Query: 228 RVRDFAEVAHAKTITREIADAALLRLAIDK 257
              D +      ++  +   A L  +  D 
Sbjct: 224 ---DQSIAYGNGSVMVKDIKAMLGLVHHDD 250


>gi|126458632|ref|YP_001054910.1| replication factor C large subunit [Pyrobaculum calidifontis JCM
           11548]
 gi|158513487|sp|A3MS27|RFCL_PYRCJ RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|126248353|gb|ABO07444.1| transcriptional regulator, Fis family [Pyrobaculum calidifontis JCM
           11548]
          Length = 421

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 54/278 (19%), Positives = 97/278 (34%), Gaps = 53/278 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFI------------EAAKARAEALD---HVLFVG 61
             +   RP++  E   Q EA   L  +I              AK R + +     VL  G
Sbjct: 4   PWVEKYRPKSFSEIVNQEEAKQILASWICTRFKAPQEFCARWAKRRDKEIKEARAVLLWG 63

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED--------RDVLFIDE 113
           PPG+GKTTL   +A+E+G      +   +     +  ++               ++  DE
Sbjct: 64  PPGIGKTTLVHALAKEIGYELVELNASDVRTGERIRQVVGRGLREASLFGYAGKIVLFDE 123

Query: 114 IHRLSIIVE----EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           +  L +  +    E +   +E  ++ +++                              P
Sbjct: 124 VDGLHVKEDLGGLEAILNLIETAKVPIVLTANNPF-------------------DPKLRP 164

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           L+D   + + L     +++  +++R     G    +EA   +A  S G  R A   L+  
Sbjct: 165 LRD-ISLVVGLKRLSEDEVVEVLKRICASEGAKCEEEALRSLAKSSYGDLRAAINDLQLY 223

Query: 230 RDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRY 267
                +A  K +T +    A  R     M F+ LD  Y
Sbjct: 224 -----LAGRKVLTVDDIKRAGERNPQLSM-FEILDRVY 255


>gi|116049476|ref|YP_791721.1| DNA polymerase III subunits gamma and tau [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115584697|gb|ABJ10712.1| DNA polymerase subunits gamma and tau [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 701

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 62/313 (19%), Positives = 95/313 (30%), Gaps = 37/313 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPR+  E  GQ      LK  I A     + L H  LF G  G+GKTT+A+++A+ L   
Sbjct: 11  RPRSFREMVGQTHV---LKALINA--LDNQRLHHAYLFTGTRGVGKTTIARILAKCLNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEIL-----YPAMEDFQL 134
              +S P     G+ +      E R  D++ +D   R  +     L     Y        
Sbjct: 66  TGVSSTP----CGECSVCREIDEGRFVDLIEVDAASRTKVEDTRELLDNVQYSPTRGRYK 121

Query: 135 DLMVGEGPSARSVKIN---------LSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             ++ E     S   N               + ATT    L   +  R  +   L     
Sbjct: 122 VYLIDEVHMLSSHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSRC-LQFSLKNMPP 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           E +   +        +   D+A   +   + G+ R A  L     D A       +    
Sbjct: 181 ERVVEHLTHVLGAENVPFEDDALWLLGRAADGSMRDAMSL----TDQAIAFGEGKVLAAD 236

Query: 246 ADAAL-LRLAIDKMG-----FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
             A L         G      +      L  +      GP     ++  L+         
Sbjct: 237 VRAMLGTLDHGQVYGVLQALLEGDARALLEAVRHLAEQGPDWGGVLAEILNVLHRVAIAQ 296

Query: 300 IEPYMIQQGFIQR 312
             P  I  G   R
Sbjct: 297 ALPEAIDNGQGDR 309


>gi|89056367|ref|YP_511818.1| DNA polymerase III subunits gamma and tau [Jannaschia sp. CCS1]
 gi|88865916|gb|ABD56793.1| DNA polymerase III subunits gamma and tau [Jannaschia sp. CCS1]
          Length = 584

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 53/250 (21%), Positives = 87/250 (34%), Gaps = 27/250 (10%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T  +  GQ      LK   +A +         +  G  G GKTT A+++A+ L
Sbjct: 13  ARKYRPATFADLIGQEAMVRTLKNAFDADRIAQA----FMLTGIRGTGKTTTARIIAKGL 68

Query: 79  GV-NFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSII------VEEILYPAM 129
                    GP     G     +   E R  DV+ +D      +       +E + Y A 
Sbjct: 69  NCIGADGEGGPTTDPCGVCQNCVAITEGRHVDVMEMDAASNTGVQNIRDAIIETVSYRAA 128

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +      ++ E             ++++   +    + ATT +  +   +  R      L
Sbjct: 129 QARYKIFIIDEVHMLSTSAFNALLKTLEEPPAHVKFLFATTEIRKVPVTVLSRCQ-RFDL 187

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
              E E +   +QR A L    + ++A   I   + G+ R A  LL    D A    A  
Sbjct: 188 RRIEPEVMIAHLQRIAGLESAEIAEDAVALITRAAEGSVRDAMSLL----DQAIAHGAGE 243

Query: 241 ITREIADAAL 250
            T +   A L
Sbjct: 244 TTADQVRAML 253


>gi|124810138|ref|XP_001348775.1| replication factor C3 [Plasmodium falciparum 3D7]
 gi|11559500|gb|AAG37985.1|AF069296_1 replication factor C3 [Plasmodium falciparum]
 gi|23497675|gb|AAN37214.1|AE014826_13 replication factor C3 [Plasmodium falciparum 3D7]
          Length = 344

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 74/223 (33%), Gaps = 27/223 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP  L +     +  S +K F++  +     L H+L  GPPG GKT+    V +
Sbjct: 14  PWVEKYRPNVLNDIISHEQVISTIKRFVQKGE-----LPHLLLHGPPGTGKTSTILAVCK 68

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           EL    + +S  +   A D   +         +  D+I   +       Y   E   L L
Sbjct: 69  EL-YGDKRSSFVLELNASDDRGIN--------VIRDQIKTFAESKNH--YTTCEKTTLKL 117

Query: 137 MV----------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           ++           +    R ++              V  +T  +Q R     R    + E
Sbjct: 118 IILDEADHMTYPAQNAMRRIMENYAKNVRFCLLCNYVNKITPAIQSRC-TAFRFAPLKKE 176

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
            +K      AK   + +T+     +     G  R     L+ V
Sbjct: 177 YMKNKALDIAKSENVNLTEGGIDSLIRVGHGDMRRILNCLQVV 219


>gi|312075109|ref|XP_003140271.1| replication factor C [Loa loa]
 gi|307764567|gb|EFO23801.1| replication factor C [Loa loa]
          Length = 308

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 52/237 (21%), Positives = 82/237 (34%), Gaps = 46/237 (19%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   +   RPR +EE   Q E  S LK  +E A      L ++LF GPPG GKT+ A  +
Sbjct: 20  EIPWVEKYRPRKVEEVAFQNEVVSVLKKVLEGAD-----LPNLLFYGPPGTGKTSAAIAL 74

Query: 75  AR--------------ELGVNFRSTSGPVIAKAGDLA--ALLTNLEDR------DVLFID 112
            R              E+  +       V  K  + A  A+ ++L D        V+ +D
Sbjct: 75  CRQLFRNTETYHDRVMEMNASDERGINIVRNKIKEFARRAVSSHLPDGSPVVGLKVIILD 134

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E   ++   +  L   ME                     +RF LI     +  + +PL  
Sbjct: 135 EADAMTTPAQAALRRTMEKESRT----------------TRFFLIC--NYITRIIDPLTS 176

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           R     R      E     ++   +   +     A  E+     G  R +   L+ +
Sbjct: 177 RCA-KFRFKSISSESQGKRLEWICQNENIEFDPLAIDELIELCDGDMRKSVTALQTI 232


>gi|66513962|ref|XP_623937.1| PREDICTED: replication factor C subunit 2 [Apis mellifera]
          Length = 350

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 79/225 (35%), Gaps = 38/225 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             I   RP+   +  G  +  S L VF     A+     +++  GPPG+GKTT    +AR
Sbjct: 37  PWIEKYRPQVFSDIVGNEDTVSRLSVF-----AQQGNCPNIIIAGPPGVGKTTTILCLAR 91

Query: 77  ------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIHRLSIIVE 122
                       EL  +       V  K    A    NL      ++ +DE   ++   +
Sbjct: 92  ILLGPIFKEAVLELNASNDRGIDVVRNKIKMFAQKRVNLPKGKHKIIILDEADSMTAGAQ 151

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           + L   ME +                 N +RF    A      +  P+Q R  +      
Sbjct: 152 QALRRTMEIYS----------------NTTRF--ALACNSSDKIIEPIQSRCAMLRYGKL 193

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
            + + L  I+    K   ++ TD+    I   ++G  R A   L+
Sbjct: 194 SDAQILAKIID-ICKKEDVSHTDDGLEAIVFTAQGDMRQALNNLQ 237


>gi|212541869|ref|XP_002151089.1| DNA replication factor C subunit Rfc3, putative [Penicillium
           marneffei ATCC 18224]
 gi|210065996|gb|EEA20089.1| DNA replication factor C subunit Rfc3, putative [Penicillium
           marneffei ATCC 18224]
          Length = 397

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 83/219 (37%), Gaps = 12/219 (5%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP +L+E  G  +  + +  FI++ +     L H+L  GPPG GKTT    +AR
Sbjct: 45  PWVEKYRPSSLDEVQGHQDILATINRFIDSHR-----LPHLLLYGPPGTGKTTTILALAR 99

Query: 77  ELGVNFRSTSGPVIAKAGDLAAL-LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
            +  +       +   A D   + +   + +      +I  ++   +E    A +   LD
Sbjct: 100 RIYGSKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSVAAPAKENSLGAFKLIILD 159

Query: 136 LMVGEGPSA-----RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
                  +A     R ++   +             L+  L  R          E++ +++
Sbjct: 160 EADAMTATAQMALRRIMEKYTANARFCIIANYTHKLSPALLSRCTRFRFSPLKEVD-IRS 218

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           +V +  +   + +  +A   +   S+G  R A  +L+  
Sbjct: 219 LVDKVIEAENVRIQPQAIESLVRLSKGDMRRALNVLQAC 257


>gi|302909278|ref|XP_003050037.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256730974|gb|EEU44324.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 354

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 84/246 (34%), Gaps = 39/246 (15%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           N S E   +   RP  L++  G  E    LK+      A+   + HV+  G PG+GKTT 
Sbjct: 28  NSSYELPWVEKYRPIFLDDVVGNTETIERLKII-----AKEGNMPHVIISGMPGIGKTTS 82

Query: 71  AQVVAR------------ELGVNFRSTSGPVIAKAGDLA--ALLTNLEDRDVLFIDEIHR 116
              +AR            EL  +       V  +    A   +        ++ +DE   
Sbjct: 83  VLCLARQLLGESYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPAGRHKLVILDEADS 142

Query: 117 LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
           ++   ++ L   ME +                 N +RF    A  +   +  PLQ R  I
Sbjct: 143 MTSGAQQALRRTMEIYS----------------NTTRFAF--ACNQSNKIIEPLQSRCAI 184

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA-GRLLRRVRDFAEV 235
                  + + +K ++Q   +   +  +D+    +   + G  R A   L      F  V
Sbjct: 185 LRYAKLTDAQVVKRLMQ-IIEAEKVEYSDDGLAALVFSAEGDMRQAINNLQSTFAGFGFV 243

Query: 236 AHAKTI 241
           +     
Sbjct: 244 SGDNVF 249


>gi|226329028|ref|ZP_03804546.1| hypothetical protein PROPEN_02930 [Proteus penneri ATCC 35198]
 gi|225202214|gb|EEG84568.1| hypothetical protein PROPEN_02930 [Proteus penneri ATCC 35198]
          Length = 495

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 55/245 (22%), Positives = 91/245 (37%), Gaps = 31/245 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T  +  GQ    + L     A     + L H  LF G  G+GKTT+A++ A+ L   
Sbjct: 11  RPQTFNDVVGQRHVLTAL-----ANGLDHQRLHHAYLFSGTRGVGKTTIARLFAKGLNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILY------PAMEDFQ 133
              TS P     G  A  L   + R  D++ ID   R  +     L       PA   F+
Sbjct: 66  TGITSKP----CGQCANCLEIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFK 121

Query: 134 LDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           + L+               ++++        + ATT    L   +  R  +   L   +I
Sbjct: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC-LQFHLRALDI 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           + + T +++      +     A   IA  + G+ R A  L     D A  +    ++ E+
Sbjct: 181 DQIATQLEKVLLAEHIENDVRARQLIARAADGSMRDALSL----TDQAIASGEGVVSTEV 236

Query: 246 ADAAL 250
               L
Sbjct: 237 VSQML 241


>gi|59801160|ref|YP_207872.1| DNA polymerase III subunits gamma and tau [Neisseria gonorrhoeae FA
           1090]
 gi|240112990|ref|ZP_04727480.1| DNA polymerase III subunits gamma and tau [Neisseria gonorrhoeae
           MS11]
 gi|240118040|ref|ZP_04732102.1| DNA polymerase III subunits gamma and tau [Neisseria gonorrhoeae
           PID1]
 gi|240123594|ref|ZP_04736550.1| DNA polymerase III subunits gamma and tau [Neisseria gonorrhoeae
           PID332]
 gi|268599069|ref|ZP_06133236.1| DNA polymerase III tau and gamma subunit [Neisseria gonorrhoeae
           MS11]
 gi|268603753|ref|ZP_06137920.1| DNA polymerase III tau and gamma subunit [Neisseria gonorrhoeae
           PID1]
 gi|268682222|ref|ZP_06149084.1| DNA polymerase III tau and gamma subunit [Neisseria gonorrhoeae
           PID332]
 gi|59718055|gb|AAW89460.1| putative DNA polymerase III tau and gamma chains [Neisseria
           gonorrhoeae FA 1090]
 gi|268583200|gb|EEZ47876.1| DNA polymerase III tau and gamma subunit [Neisseria gonorrhoeae
           MS11]
 gi|268587884|gb|EEZ52560.1| DNA polymerase III tau and gamma subunit [Neisseria gonorrhoeae
           PID1]
 gi|268622506|gb|EEZ54906.1| DNA polymerase III tau and gamma subunit [Neisseria gonorrhoeae
           PID332]
          Length = 707

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 49/303 (16%), Positives = 89/303 (29%), Gaps = 63/303 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T  +  GQ      L+  ++  +     L H  L  G  G+GKTT+A+++A+ L   
Sbjct: 11  RPKTFSDLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCE 65

Query: 82  FRS------------------------TSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                                ++  +L N +         V  I
Sbjct: 66  NAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYII 125

Query: 112 DEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+H LS      +   +E+    +  ++      +     LSR                
Sbjct: 126 DEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNM------- 178

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
                           + +   +        +A    A   +   + G+ R A  LL + 
Sbjct: 179 --------------TAQQVADHLAHVLDSEKIAYDPPALQLLGRAAAGSMRDALSLLDQA 224

Query: 230 RDFAEVAHAKTITREIADAALLRLAIDKM-GFDQLDLRYLTMIARNFGGGPVGIETISAG 288
                   A+   R++  A   +   + + G    D   L   A+      VG +     
Sbjct: 225 IALGSGKVAENDVRQMIGAVDKQYLYELLTGIVNQDGEALLAKAQEMAACAVGFDN---A 281

Query: 289 LSE 291
           L E
Sbjct: 282 LGE 284


>gi|325298548|ref|YP_004258465.1| DNA polymerase III, subunits gamma and tau [Bacteroides
           salanitronis DSM 18170]
 gi|324318101|gb|ADY35992.1| DNA polymerase III, subunits gamma and tau [Bacteroides
           salanitronis DSM 18170]
          Length = 594

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 49/245 (20%), Positives = 75/245 (30%), Gaps = 54/245 (22%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T +   GQ    + LK  I   K         LF GP G+GKTT A++ A+ +
Sbjct: 8   ARKYRPSTFDTVVGQRALTTTLKNAIANHKLAHAY----LFCGPRGVGKTTCARIFAKTI 63

Query: 79  GV-------------------------NFRSTSGPVIAKAGDLAALLT------NLEDRD 107
                                      N             D+ +L+        +    
Sbjct: 64  NCLHPTSEGEACNACESCVAFNEQRSYNIHELDAASNNSVEDIRSLIEQVRIPPQVGKYK 123

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           V  IDE+H LS          +E+     +                   I ATT    + 
Sbjct: 124 VYIIDEVHMLSQAAFNAFLKTLEEPPRHAI------------------FILATTEKHKIL 165

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             +  R  I    N   + D+   ++  A    +    EA   IA ++ G  R A  +  
Sbjct: 166 PTILSRCQI-YDFNRISVNDMVEHLESVASKEHIDAEPEALTVIAQKADGGMRDALSIFD 224

Query: 228 RVRDF 232
           +V  F
Sbjct: 225 QVASF 229


>gi|313202632|ref|YP_004041289.1| DNA polymerase iii, tau subunit [Paludibacter propionicigenes WB4]
 gi|312441948|gb|ADQ78304.1| DNA polymerase III, tau subunit [Paludibacter propionicigenes WB4]
          Length = 584

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 59/294 (20%), Positives = 87/294 (29%), Gaps = 70/294 (23%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARE 77
               RP T     GQ      LK  I++       L H  LF GP G+GKTT A++ A+ 
Sbjct: 8   ARKYRPSTFNSVVGQSSLTVTLKNAIKS-----NHLAHAYLFCGPRGVGKTTCARIFAKT 62

Query: 78  LGV-------------------------NFRSTSGPVIAKAGDLAALLT------NLEDR 106
           +                           N             D+ +L         +   
Sbjct: 63  INCQNLTSDFEACNECESCVSFNEQRSYNIHELDAASNNGVDDIRSLTDQVRIPPQIGKY 122

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
            V  IDE+H LS          +E+          P A ++ I         ATT    +
Sbjct: 123 SVYIIDEVHMLSQGAFNAFLKTLEE----------PPAHAIFIL--------ATTEKHKI 164

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
              +  R  I    N   + D    +Q  A+  G+ V       +A +S G  R A  + 
Sbjct: 165 IPTILSRCQI-YDFNRITVADTVKHLQMVAEKEGVTVDVNGLNVVAQKSDGGMRDALSIF 223

Query: 227 RRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV 280
            ++  F           E                + LD  Y   +   F  G V
Sbjct: 224 DQLVSFCGNNITYQGVIEN--------------LNVLDYEYYFKLVEAFLKGDV 263


>gi|307328803|ref|ZP_07607973.1| DNA polymerase III, subunits gamma and tau [Streptomyces
           violaceusniger Tu 4113]
 gi|306885468|gb|EFN16484.1| DNA polymerase III, subunits gamma and tau [Streptomyces
           violaceusniger Tu 4113]
          Length = 473

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 74/234 (31%), Gaps = 25/234 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T  E  GQ      L+  +   +         LF GP G GKTT A+++AR
Sbjct: 35  ALYRRYRPETFAEVIGQEHVTGPLQQALRNNRVNHAY----LFSGPRGCGKTTSARILAR 90

Query: 77  ELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFIDEIHRLSII------VEEILYPA 128
            L      T  P        DLA         DV+ ID      +        +    PA
Sbjct: 91  CLNCEKGPTPAPCGECQSCQDLA--RNGPGSIDVIEIDAASHGGVDDARELREKAFFGPA 148

Query: 129 MEDFQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR---FGIP 177
              +++ ++         G     + V+        I ATT    +   ++ R   +   
Sbjct: 149 SSRYKIYIIDEAHMVTSAGFNALLKVVEEPPQHLKFIFATTEPEKVIGTIRSRTHHYPFR 208

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
           +       E L  +  R A      V        A   R +  +  +LL    D
Sbjct: 209 LVPPGTLREYLGEVCGREAIPVEDGVLPLVVRAGAGSVRDSMSVMDQLLAGAAD 262


>gi|320538818|ref|ZP_08038494.1| DNA polymerase III/DNA elongation factor III, tau and gamma
           subunits [Serratia symbiotica str. Tucson]
 gi|320030978|gb|EFW12981.1| DNA polymerase III/DNA elongation factor III, tau and gamma
           subunits [Serratia symbiotica str. Tucson]
          Length = 642

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 60/308 (19%), Positives = 105/308 (34%), Gaps = 35/308 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKTT+A+++A+ L    
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTTIARLLAKGLNCEA 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILY------PAMEDFQL 134
             T+ P     G         + R  D++ ID   R  +     L       PA   F++
Sbjct: 67  GITATP----CGQCTNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122

Query: 135 DLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            L+               ++++   +    + ATT    L   +  R  +   LN  ++E
Sbjct: 123 YLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRC-LQFHLNALDVE 181

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
            ++  +QR      +     A   +A  + G+ R A  L     D A       +T    
Sbjct: 182 QIRNQLQRVLIAEQITSDARALQLLARAADGSMRDALSL----TDQAIALGQGQVTAATV 237

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
              L  L       D+  L  L  +A   G   +     SA      +++       + +
Sbjct: 238 SQMLGTLD------DEQPLAILEALASADGEKVMAQVAQSAARGVDWESLLVETLALLHR 291

Query: 307 QGFIQRTP 314
              +Q  P
Sbjct: 292 LAMVQLLP 299


>gi|260440445|ref|ZP_05794261.1| DNA polymerase III subunits gamma and tau [Neisseria gonorrhoeae
           DGI2]
          Length = 707

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 49/303 (16%), Positives = 89/303 (29%), Gaps = 63/303 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T  +  GQ      L+  ++  +     L H  L  G  G+GKTT+A+++A+ L   
Sbjct: 11  RPKTFSDLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCE 65

Query: 82  FRS------------------------TSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                                ++  +L N +         V  I
Sbjct: 66  NAQHGELCGVCQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYII 125

Query: 112 DEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+H LS      +   +E+    +  ++      +     LSR                
Sbjct: 126 DEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNM------- 178

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
                           + +   +        +A    A   +   + G+ R A  LL + 
Sbjct: 179 --------------TAQQVADHLAHVLDSEKIAYDPPALQLLGRAAAGSMRDALSLLDQA 224

Query: 230 RDFAEVAHAKTITREIADAALLRLAIDKM-GFDQLDLRYLTMIARNFGGGPVGIETISAG 288
                   A+   R++  A   +   + + G    D   L   A+      VG +     
Sbjct: 225 IALGSGKVAENDVRQMIGAVDKQYLYELLTGIVNQDGEALLAKAQEMAACAVGFDN---A 281

Query: 289 LSE 291
           L E
Sbjct: 282 LGE 284


>gi|126733475|ref|ZP_01749222.1| DNA polymerase III, subunits gamma and tau [Roseobacter sp. CCS2]
 gi|126716341|gb|EBA13205.1| DNA polymerase III, subunits gamma and tau [Roseobacter sp. CCS2]
          Length = 612

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 57/258 (22%), Positives = 89/258 (34%), Gaps = 26/258 (10%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
            +  Q        RP T  +  GQ      LK   EA +         +  G  G GKTT
Sbjct: 33  TDQPQYQVLARKYRPETFADMVGQDAMVRTLKNAFEADRIAQA----FIMTGIRGTGKTT 88

Query: 70  LAQVVARELGV-NFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEIL- 125
            A+++A+ +       T GP     G     +  +E R  DV+ +D   R  +     + 
Sbjct: 89  TARIIAKGMNCIGPDGTGGPTTEPCGQCEHCVAIMEGRHVDVMEMDAASRTGVGDIREII 148

Query: 126 ----YPAMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
               Y A        ++ E             ++++        I ATT +  +   +  
Sbjct: 149 DSVHYRAASARFKIYIIDEVHMLSKNAFNALLKTLEEPPEHVKFIFATTEIRQVPVTVLS 208

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R      L   E E    ++++ A   G  +TDEA   I   + G+ R A  LL    D 
Sbjct: 209 RCQ-RFDLRRIEPETQIALLRKIATAEGAEITDEALALITRAAEGSARDAQSLL----DQ 263

Query: 233 AEVAHAKTITREIADAAL 250
           A    A   T +   A L
Sbjct: 264 AISHGAGETTADQVRAML 281


>gi|88703347|ref|ZP_01101063.1| conserved hypothetical protein [Congregibacter litoralis KT71]
 gi|88702061|gb|EAQ99164.1| conserved hypothetical protein [Congregibacter litoralis KT71]
          Length = 322

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 72/225 (32%), Gaps = 46/225 (20%)

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           +HR +   ++   P +E+  L L+    E P+       LSR  +    +          
Sbjct: 1   MHRFNKSQQDAFLPFVENGTLILIGATTENPAFELNSALLSRARVYRLHS---------- 50

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
                         ++L  I++RG     L +T+     IA+ + G  R A  LL     
Sbjct: 51  -----------LTAQELGMILRRGEAQLSLTLTEAQREGIALAADGDARRALNLLELAMS 99

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGG-GPVGIETISAGLS 290
            +                     +D+ GF++     L    R F   G    + ISA   
Sbjct: 100 LSGEDG----------------RLDEAGFEE----VLRGSPRRFDKNGDNFYDQISALHK 139

Query: 291 EPRDAIEDLIEPYMIQQGFIQRT--PRGRLLMPIAWQHLGIDIPH 333
             R +  D    +  +            R ++ +A + +G   P 
Sbjct: 140 AVRGSSPDAALYWYCRMLDGGCDSLYLARRVIRMASEDIGNADPR 184


>gi|119196513|ref|XP_001248860.1| conserved hypothetical protein [Coccidioides immitis RS]
          Length = 352

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 78/227 (34%), Gaps = 38/227 (16%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   +   RP  L++  G  E    LK+      AR   + HV+  G PG+GKTT    +
Sbjct: 27  ELPWVEKYRPVFLDDVVGNTETIERLKII-----ARDGNMPHVIISGMPGIGKTTSILCL 81

Query: 75  AREL-----GVNFRSTSGPVIAKAGDLAALLTNLEDRDV---------LFIDEIHRLSII 120
           AR++            +         +   +     + V         + +DE   ++  
Sbjct: 82  ARQMLGDVYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGKHKLVILDEADSMTSG 141

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            ++ L   ME +                   +RF    A  +   +  PLQ R  I    
Sbjct: 142 AQQALRRTMEIYSAT----------------TRFAF--ACNQSNKIIEPLQSRCAILRYS 183

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
              + + +K ++Q   +   +  +D+    +   + G  R A   L+
Sbjct: 184 RLTDAQVVKRLMQ-ICEAEDVKYSDDGIAALVFSAEGDMRQAINNLQ 229


>gi|330752554|emb|CBL87501.1| DNA polymerase III subunit gamma/tau [uncultured Flavobacteria
           bacterium]
          Length = 544

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 66/206 (32%), Gaps = 27/206 (13%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP    E  GQ      L+  I             LF GP G+GKTT A++ A+E+
Sbjct: 4   ARKYRPNKFSEVFGQDSITKALEKSISNQMLSQAY----LFCGPRGVGKTTCARIFAKEI 59

Query: 79  G------------VNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSII 120
                         N             D+ +L   +          V  IDE+H LS  
Sbjct: 60  NNRDNSSKNQDYTYNIFELDAASNNSVEDIRSLTDQVRIPPQNGAFKVYIIDEVHMLSQS 119

Query: 121 VEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTR-VGLLTNPLQDRFGIP 177
                   +E+       ++      + +   LSR          +  +T  L +   I 
Sbjct: 120 AFNAFLKTLEEPPSHAKFILATTEKHKIIPTILSRCQTFDFKRISIESITEKLVEISKIE 179

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAV 203
                YE E L+TI ++       A+
Sbjct: 180 QIT--YENEALRTIAKKSDGSMRDAM 203


>gi|238855363|ref|ZP_04645675.1| DNA polymerase III subunit gamma/tau [Lactobacillus jensenii 269-3]
 gi|260664921|ref|ZP_05865772.1| DNA polymerase III gamma-tau [Lactobacillus jensenii SJ-7A-US]
 gi|282934593|ref|ZP_06339840.1| DNA polymerase III, gamma and tau subunit [Lactobacillus jensenii
           208-1]
 gi|238832024|gb|EEQ24349.1| DNA polymerase III subunit gamma/tau [Lactobacillus jensenii 269-3]
 gi|260561404|gb|EEX27377.1| DNA polymerase III gamma-tau [Lactobacillus jensenii SJ-7A-US]
 gi|281301345|gb|EFA93642.1| DNA polymerase III, gamma and tau subunit [Lactobacillus jensenii
           208-1]
          Length = 593

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 80/224 (35%), Gaps = 21/224 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPRT +   GQ      LK  I     R +     LF GP G GKT+ A++ A+ L    
Sbjct: 11  RPRTFDSVVGQEAITDTLKNAI----IRNKVSHAFLFAGPRGTGKTSCAKIFAKALNCLN 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
               G    +  +  A  +     D++ ID      +  +  I +++ Y   +      +
Sbjct: 67  LQD-GEPCNECENCKAADSGAMP-DIIEIDAASNNGVDEIREIRDKVKYAPTQGKYKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT +  +   +  R            ++L
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRI-SKQNL 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
              ++   +   +   D A   IA  + G  R +  +L ++  F
Sbjct: 184 VDRMKFILEQENIPYEDSALQVIAQVADGGMRDSLSILDQLLSF 227


>gi|78043423|ref|YP_361464.1| putative DNA polymerase III, gamma/tau subunits [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77995538|gb|ABB14437.1| putative DNA polymerase III, gamma/tau subunits [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 511

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/240 (19%), Positives = 72/240 (30%), Gaps = 53/240 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  E  GQ      LK  +   +         LF GP G GKTT A+V+A+ +    
Sbjct: 10  RPKTFSEIVGQETIVKILKNAVATMQVAHAY----LFSGPRGTGKTTTAKVLAKAVNCEH 65

Query: 83  ------------------------RSTSGPVIAKAGDLAALLTNLE------DRDVLFID 112
                                               ++  L  +++         V  ID
Sbjct: 66  PVEGEPCNQCPSCIGINNQSLLNVFEIDAASNRGIDEIRELRESIKLVPAQGKYKVYIID 125

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H L+      L   +E+                         I ATT    +   +  
Sbjct: 126 EVHMLTNEAFNALLKTLEE------------------PPEHVIFILATTEFNKVPVTIVS 167

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R            + +   ++  A+   L    EA   IA  S G  R A  L+ ++  F
Sbjct: 168 RCQ-RFDFKRISTKTIWEHLKNIAEKEKLQYEAEALHLIAEASEGGLRDALSLMDQILVF 226


>gi|323705216|ref|ZP_08116792.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535642|gb|EGB25417.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 530

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 48/275 (17%), Positives = 95/275 (34%), Gaps = 30/275 (10%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
              RP++  E  GQ      LK  I++ +         LF G  G GKT++A++ A+ + 
Sbjct: 7   RKYRPKSFCEVLGQNHIVRTLKNQIKSGRIGHAY----LFCGTRGTGKTSVAKIFAKAVN 62

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII-----VEEILYPAMEDFQL 134
                   P       +     N    D++ ID     S+       + I+Y        
Sbjct: 63  CPNSVDGEP--CNKCQICESANNNSLMDIIEIDAASNNSVDDVRELRDNIIYAPSSCKYK 120

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             ++ E             ++++        I ATT    +   +  R            
Sbjct: 121 VYIIDEVHMLSGSAFNALLKTLEEPPQHAIFILATTEPNKIPATILSRCQ-RFDFKRISS 179

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR-- 243
           + +   +++ A+ + + +  +A   IA    G+ R A  +L +   +++V     +    
Sbjct: 180 KVISQNIKKIAEDSQINIDGKAIALIAKHGNGSMRDAISILEQCASYSDVLTYDDVCDIL 239

Query: 244 ----EIADAALLRLAIDKMGFD---QLDLRYLTMI 271
               +    AL+    D+ G +   Q+D   L  I
Sbjct: 240 GTVNDDTLFALVNSLNDRDGKEIIKQIDKLMLYGI 274


>gi|258645511|ref|ZP_05732980.1| putative DNA polymerase III, gamma/tau subunit [Dialister invisus
           DSM 15470]
 gi|260402865|gb|EEW96412.1| putative DNA polymerase III, gamma/tau subunit [Dialister invisus
           DSM 15470]
          Length = 638

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 49/245 (20%), Positives = 85/245 (34%), Gaps = 53/245 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV-- 80
           RP T +E  GQ      +    E  +         LF GP G GKT++A+++A+ +    
Sbjct: 11  RPSTFKEIIGQKHISIPILRAFEQNRLAHAY----LFSGPRGTGKTSMARILAKAVNCLD 66

Query: 81  ----------------------NFRSTSGPVIAKAGDLAALLTN------LEDRDVLFID 112
                                 +     G       ++  L  +        ++ V  ID
Sbjct: 67  LKNGNPCNECANCKSINTGASMDVYEIDGASARGVDEIRVLRESVRTLPVAGNKKVYIID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H L+      L   +E+          P A  + I         ATT    +   +  
Sbjct: 127 EVHMLTKEAFNALLKTLEE----------PPAHVLFIL--------ATTEPAKIPLTILS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R       +   + D+K  +   ++ + L++T EAA  IA+R+ G  R A  LL +    
Sbjct: 169 RCQ-RYEFHRISVNDIKEHLLHISQESHLSLTPEAAALIAVRAEGGLRDALSLLDQCSGA 227

Query: 233 AEVAH 237
           +    
Sbjct: 228 SAGNE 232


>gi|19115452|ref|NP_594540.1| DNA replication factor C complex subunit Rfc2 [Schizosaccharomyces
           pombe 972h-]
 gi|1350581|sp|Q09843|RFC2_SCHPO RecName: Full=Replication factor C subunit 2; Short=Replication
           factor C2; AltName: Full=Activator 1 41 kDa subunit
 gi|1039340|emb|CAA91237.1| DNA replication factor C complex subunit Rfc2 [Schizosaccharomyces
           pombe]
          Length = 340

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/238 (16%), Positives = 78/238 (32%), Gaps = 44/238 (18%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             + L RP+TL++ + Q      LK  +      +  L H+LF G PG GKT+    ++R
Sbjct: 20  PWVELYRPKTLDQVSSQESTVQVLKKTL-----LSNNLPHMLFYGSPGTGKTSTILALSR 74

Query: 77  E------LGVNFRSTSGPVIAKAGDLAALLTNLEDRD--------------VLFIDEIHR 116
           E      +       +         +   + +                   ++ +DE   
Sbjct: 75  ELFGPQLMKSRVLELNASDERGISIIREKVKSFAKTTVTNKVDGYPCPPFKIIILDEADS 134

Query: 117 LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
           ++   +  L   ME +           AR  +  L           +  + +PL  R   
Sbjct: 135 MTQDAQAALRRTMESY-----------ARITRFCL-------ICNYMTRIIDPLSSRCS- 175

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
             R    + E++   ++  A    +++       +   S G  R A   L+   +  +
Sbjct: 176 KYRFKPLDNENMVKRLEFIAADQAVSMEPGVVNALVECSGGDMRKAITFLQSAANLHQ 233


>gi|315925749|ref|ZP_07921956.1| DNA polymerase III, gamma/tau subunit DnaX [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315620858|gb|EFV00832.1| DNA polymerase III, gamma/tau subunit DnaX [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 567

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 50/241 (20%), Positives = 90/241 (37%), Gaps = 21/241 (8%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP+T +E  GQ      LK  I + +         L  G  G GKTT+A++ AR
Sbjct: 22  ALYRKYRPQTFDEVVGQDFVTRILKNQIISGRVGHAY----LLTGIRGTGKTTIAKIFAR 77

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +         P  A A  +   +      D++ ID      +  +  I E++ YP    
Sbjct: 78  AINCTDNRGGNPCNACA--VCREIEKPGVMDIIEIDAASNRGVDEIRDIREKVKYPPTLG 135

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++   +    I ATT    L   +  R      +  
Sbjct: 136 AYKVYIIDEVHMLTREAFNALLKTLEEPPAHVVFILATTEPNKLPMTILSRCQ-RFDIRP 194

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            + E +   ++   +  G+A+ ++A   +A R   + R A  +L ++ D  E   A T  
Sbjct: 195 IDQEVIADRMRMILQDIGVAMDEDALQFVAARGDHSMRDALSILDQIIDIREDGAAITQE 254

Query: 243 R 243
           +
Sbjct: 255 Q 255


>gi|315639690|ref|ZP_07894830.1| DNA polymerase III, gamma/tau subunit DnaX [Enterococcus italicus
           DSM 15952]
 gi|315484651|gb|EFU75107.1| DNA polymerase III, gamma/tau subunit DnaX [Enterococcus italicus
           DSM 15952]
          Length = 573

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 55/292 (18%), Positives = 97/292 (33%), Gaps = 32/292 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           R +  +E  GQ      LK  I       + + H  LF GP G GKT+ A++ A+ +   
Sbjct: 11  RSQRFDEIVGQQAITQTLKNAI-----VQQQISHAYLFTGPRGTGKTSAAKIFAKAINCP 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL-----YPAMEDFQLDL 136
                 P      D+   +T     DV+ ID      +     +     Y   +      
Sbjct: 66  HSVDGEPCNEC--DMCLSITKGSQEDVIEIDAASNNGVEEIRFIRDRANYAPTQAKYKVY 123

Query: 137 MVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ++ E             ++++        I ATT    +   +  R            +D
Sbjct: 124 IIDEVHMLSTGAFNALLKTLEEPKKNVIFILATTEPHKIPATIISRTQRFDFKRIL-PQD 182

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           +   ++   +   L+  ++A   IA  + G  R A  +L    D A      TIT     
Sbjct: 183 IVQHLEEILQEMNLSYEEDALAVIARAAEGGMRDALSIL----DQAIAFSDGTIT---TQ 235

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
            A        +  + +D   L  +  +  G    ++ +     E R  IE+L
Sbjct: 236 DAFDVTG--SLTSELMDRLLLACLTHDATGALEQLDGLLESGKEARRLIENL 285


>gi|262383581|ref|ZP_06076717.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. 2_1_33B]
 gi|262294479|gb|EEY82411.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. 2_1_33B]
          Length = 586

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 80/228 (35%), Gaps = 20/228 (8%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T     GQ    + LK  I++ K         LF GP G+GKT+ A++ A+ +
Sbjct: 8   ARKYRPSTFRSVVGQKSLTTTLKNAIQSNKLAHAY----LFCGPRGVGKTSCARIFAKTI 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI------IVEEILYPAMEDF 132
                +  G          A        ++  +D     S+      I +  + P +  +
Sbjct: 64  NCLNPTADGEACNACESCRA-FNEQRSYNIHELDAASNNSVDDIRTLIDQVRIPPPIGKY 122

Query: 133 QLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           ++ ++               ++++        I ATT    +   +  R  I        
Sbjct: 123 KVFIIDEVHMLTTAAFNAFLKTLEEPPHHALFILATTEKHKVLPTILSRCQIYDFSRI-S 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           I D+   +Q  +   G+    EA   IA ++ G  R A  +  +V  F
Sbjct: 182 IADMVEHLQYVSSQEGVTAEPEALNVIAQKADGGMRDALSIFDQVVSF 229


>gi|15596729|ref|NP_250223.1| DNA polymerase III subunits gamma and tau [Pseudomonas aeruginosa
           PAO1]
 gi|9947490|gb|AAG04921.1|AE004581_8 DNA polymerase subunits gamma and tau [Pseudomonas aeruginosa PAO1]
          Length = 681

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 62/313 (19%), Positives = 95/313 (30%), Gaps = 37/313 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPR+  E  GQ      LK  I A     + L H  LF G  G+GKTT+A+++A+ L   
Sbjct: 11  RPRSFREMVGQTHV---LKALINA--LDNQRLHHAYLFTGTRGVGKTTIARILAKCLNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEIL-----YPAMEDFQL 134
              +S P     G+ +      E R  D++ +D   R  +     L     Y        
Sbjct: 66  TGVSSTP----CGECSVCREIDEGRFVDLIEVDAASRTKVEDTRELLDNVQYSPTRGRYK 121

Query: 135 DLMVGEGPSARSVKIN---------LSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             ++ E     S   N               + ATT    L   +  R  +   L     
Sbjct: 122 VYLIDEVHMLSSHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSRC-LQFSLKNMPP 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           E +   +        +   D+A   +   + G+ R A  L     D A       +    
Sbjct: 181 ERVVEHLTHVLGAENVPFEDDALWLLGRAADGSMRDAMSL----TDQAIAFGEGKVLAAD 236

Query: 246 ADAAL-LRLAIDKMG-----FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
             A L         G      +      L  +      GP     ++  L+         
Sbjct: 237 VRAMLGTLDHGQVYGVLQALLEGDARALLEAVRHLAEQGPDWGGVLAEILNVLHRVAIAQ 296

Query: 300 IEPYMIQQGFIQR 312
             P  I  G   R
Sbjct: 297 ALPEAIDNGQGDR 309


>gi|255088619|ref|XP_002506232.1| predicted protein [Micromonas sp. RCC299]
 gi|226521503|gb|ACO67490.1| predicted protein [Micromonas sp. RCC299]
          Length = 329

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 48/238 (20%), Positives = 77/238 (32%), Gaps = 44/238 (18%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           S     +   RPR + +   Q E    L+  +E A      + H+LF GPPG GKTT A 
Sbjct: 3   STSQPWVEKYRPRNINDVAHQEEVVRTLEKALETA-----NMPHMLFYGPPGTGKTTCAL 57

Query: 73  VVAR-------------ELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFID 112
            + R             EL  +       V  K    A+                +L +D
Sbjct: 58  AICRQLYGPELIKSRVLELNASDERGISVVRNKIKGFASTAVGQGAPGYPSPPYKILILD 117

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E   ++   +  L   ME +                  ++RF +      +  +  P+  
Sbjct: 118 EADSMTNDAQSALRRTMETYS----------------KVTRFFI--LCNYISRIIEPIAS 159

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
           R     R      E +   ++  A   GL + +      +  S G  R A  LL+   
Sbjct: 160 RCA-KFRFKPLGHEVMGDRLKFIATAEGLTLGEGCYEACSTHSGGDMRKAITLLQSAA 216


>gi|157965023|ref|YP_001499847.1| DNA polymerase III subunits gamma and tau [Rickettsia massiliae
           MTU5]
 gi|157844799|gb|ABV85300.1| DNA polymerase III gamma and tau chains [Rickettsia massiliae MTU5]
          Length = 516

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 88/248 (35%), Gaps = 22/248 (8%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP    E  GQ      L   I   +         L  G  G+GKTT A+++A+ +
Sbjct: 21  ARKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGY----LLTGIRGVGKTTSARIIAKAV 76

Query: 79  GVNFRSTSGPVIAKAGDLAALLT--NLEDRDVLFIDEIHRLS-----IIVEEILYPAMED 131
             +   T    I    +    ++  N    D++ ID   + S      I+E   Y  ++ 
Sbjct: 77  NCSALITENTTIKTCEECTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQG 136

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT V  +   +  R      L  
Sbjct: 137 KHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFILATTEVQKIPATIISRCQ-RYDLRR 195

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
              E++  +++   K   L    EA   IA +S G+ R A  +L +    + V     I+
Sbjct: 196 LSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDAVSILDQAASMS-VKSDNIIS 254

Query: 243 REIADAAL 250
            ++ +  L
Sbjct: 255 PQVINQML 262


>gi|300790720|ref|YP_003771011.1| DNA polymerase III subunits gamma/tau [Amycolatopsis mediterranei
           U32]
 gi|299800234|gb|ADJ50609.1| DNA polymerase III subunit gamma/tau [Amycolatopsis mediterranei
           U32]
          Length = 730

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/260 (17%), Positives = 79/260 (30%), Gaps = 27/260 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T  E  GQ      L+  + A +         LF GP G GKT+ A+++AR
Sbjct: 4   ALYRKYRPATFAEVVGQEHVTEPLRTALSAGRINHAY----LFSGPRGCGKTSSARIMAR 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR----DVLFID-----EIHRLSIIVEEILYP 127
            L        GP     G+  +      +     DV  +D      +     + ++  Y 
Sbjct: 60  SLNC----AKGPTPDPCGECNSCKALAPEGPGSVDVTELDAASHGGVDDARELRDKAFYA 115

Query: 128 AMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
             E      ++ E             + V+        I ATT    +   ++ R     
Sbjct: 116 PAESRYRVFIIDEAHMVTTQGFNALLKIVEEPPEHVIFIFATTEPDKVLTTIRSR-THHY 174

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
                    ++ +++R     G+ V       +     G+ R    +L ++   A     
Sbjct: 175 PFRLIPPSSMRNLLERNIAAEGVEVEPAVYPLVIRAGGGSARDTQSVLDQLLAGAGPEGV 234

Query: 239 KTITREIADAALLRLAIDKM 258
                           ID M
Sbjct: 235 SYSRAVALLGVTDVALIDDM 254


>gi|291400267|ref|XP_002716498.1| PREDICTED: replication factor C 4 [Oryctolagus cuniculus]
          Length = 364

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 77/234 (32%), Gaps = 45/234 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+ ++E   Q E  S LK  +E A      L ++LF GPPG GKT+     AR
Sbjct: 39  PWVEKYRPKCVDEVAFQEEVVSVLKKSLEGAD-----LPNLLFYGPPGTGKTSTILAAAR 93

Query: 77  -------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD--------VLFIDEIH 115
                        EL  +       V  K  + A L  +    D        ++ +DE  
Sbjct: 94  ELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEAD 153

Query: 116 RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
            ++   +  L   ME                     +RF        V  +  PL  R  
Sbjct: 154 SMTSAAQAALRRTMEKESKT----------------TRF--CLICNYVSRIIEPLTSRCS 195

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
              R      +  +  +   A+   + +++E    +   S G  R A   L+  
Sbjct: 196 -KFRFKPLSDKIQQQRLLDIAEKENVIISNEGIAYLVKVSEGDLRKAITFLQSA 248


>gi|265766021|ref|ZP_06094062.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. 2_1_16]
 gi|263253689|gb|EEZ25154.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. 2_1_16]
 gi|301164016|emb|CBW23572.1| putative DNA polymerase III [Bacteroides fragilis 638R]
          Length = 614

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 76/228 (33%), Gaps = 20/228 (8%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T E   GQ    + LK  I   K         LF GP G+GKTT A++ A+ +
Sbjct: 8   ARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAY----LFCGPRGVGKTTCARIFAKTI 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL-----YPAMEDFQ 133
                +  G    +     A        ++  +D     S+     L      P      
Sbjct: 64  NCMNLTADGEACNECESCVA-FNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKY 122

Query: 134 LDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
              ++ E             ++++        I ATT    +   +  R  I    N   
Sbjct: 123 KVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQI-YDFNRIS 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           ++D    +   A   G+    EA   IA+++ G  R A  +  +V  F
Sbjct: 182 VDDTVNHLTYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSF 229


>gi|255319321|ref|ZP_05360538.1| DNA polymerase III, subunits gamma and tau [Acinetobacter
           radioresistens SK82]
 gi|262379765|ref|ZP_06072921.1| DNA polymerase III [Acinetobacter radioresistens SH164]
 gi|255303714|gb|EET82914.1| DNA polymerase III, subunits gamma and tau [Acinetobacter
           radioresistens SK82]
 gi|262299222|gb|EEY87135.1| DNA polymerase III [Acinetobacter radioresistens SH164]
          Length = 721

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 51/262 (19%), Positives = 79/262 (30%), Gaps = 57/262 (21%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RPR   E  GQ          +  A  R       LF G  G+GKTT+A+++A+ L
Sbjct: 6   ARKYRPRNFNELVGQSHV----SRALTNALERGRLHHAYLFTGTRGVGKTTIARILAKCL 61

Query: 79  GVNFRSTS------------------------GPVIAKAGDLAALLTNL------EDRDV 108
                 TS                             K  D   LL N+          V
Sbjct: 62  NCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKV 121

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
             IDE+H LS      L   +E+                         + ATT    L  
Sbjct: 122 YLIDEVHMLSTHSFNALLKTLEE------------------PPEHVKFLFATTDPQKLPI 163

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            +  R  +   L    ++++   + R  +   +    +A  +I   ++G+ R A  L   
Sbjct: 164 TVISRC-LQFTLRPLAVDEITEHLTRILQKEEINADSDAIWQIGESAQGSLRDALSL--- 219

Query: 229 VRDFAEVAHAKTITREIADAAL 250
             D A       +  +     L
Sbjct: 220 -TDQAIAYGQGEVHHQDVKEML 240


>gi|134297921|ref|YP_001111417.1| DNA polymerase III subunits gamma and tau [Desulfotomaculum
           reducens MI-1]
 gi|134050621|gb|ABO48592.1| DNA polymerase III, tau subunit [Desulfotomaculum reducens MI-1]
          Length = 540

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 58/290 (20%), Positives = 99/290 (34%), Gaps = 63/290 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV-- 80
           RP+   +  GQ      L    + A  + +     LF GP G GKTT A+V+A+ L    
Sbjct: 11  RPQYFSDIVGQRHITRTL----QNALLQDKVAHAYLFCGPRGTGKTTTAKVLAKALNCLV 66

Query: 81  -------------------------NFRSTSGPVIAKAGDLAALLT---NLEDRDVLFID 112
                                       + S   I +  DL   +    +  ++ V  ID
Sbjct: 67  PTSGEPCNDCENCRAVNEGNSVDVVEIDAASNRGIDEIRDLREKVKFAPSTGEKKVYIID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H L+      L   +E+                    S    + ATT    +   +  
Sbjct: 127 EVHMLTDQAFNALLKTLEE------------------PPSHVVFVLATTEAHKVPVTILS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R          + +++   +Q  A+   + V +EA   IA  + G  R A  +L +   F
Sbjct: 169 RCQ-RFDFRRIKPDEMVGRLQEVAQGANIEVEEEALQLIAKAAEGGLRDALSILDQGAAF 227

Query: 233 AEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGI 282
           AE    KT+T E   + L  +  D +      ++    +A    G  + +
Sbjct: 228 AE----KTVTTEDIHSILGTVKQDIL------VKMTHCLAEGKAGEALKL 267


>gi|150008698|ref|YP_001303441.1| DNA polymerase III subunit gamma/tau [Parabacteroides distasonis
           ATCC 8503]
 gi|149937122|gb|ABR43819.1| DNA polymerase III subunit gamma/tau [Parabacteroides distasonis
           ATCC 8503]
          Length = 586

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 80/228 (35%), Gaps = 20/228 (8%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T     GQ    + LK  I++ K         LF GP G+GKT+ A++ A+ +
Sbjct: 8   ARKYRPSTFRSVVGQKSLTTTLKNAIQSNKLAHAY----LFCGPRGVGKTSCARIFAKTI 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI------IVEEILYPAMEDF 132
                +  G          A        ++  +D     S+      I +  + P +  +
Sbjct: 64  NCLNPTADGEACNACESCRA-FNEQRSYNIHELDAASNNSVDDIRTLIDQVRIPPPIGKY 122

Query: 133 QLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           ++ ++               ++++        I ATT    +   +  R  I        
Sbjct: 123 KVFIIDEVHMLTTAAFNAFLKTLEEPPHHALFILATTEKHKVLPTILSRCQIYDFSRI-S 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           I D+   +Q  +   G+    EA   IA ++ G  R A  +  +V  F
Sbjct: 182 IADMVEHLQYVSSQEGVTAEPEALNVIAQKADGGMRDALSIFDQVVSF 229


>gi|312897779|ref|ZP_07757195.1| ATP-dependent protease, Lon family [Megasphaera micronuciformis
           F0359]
 gi|310621163|gb|EFQ04707.1| ATP-dependent protease, Lon family [Megasphaera micronuciformis
           F0359]
          Length = 635

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 58/271 (21%), Positives = 95/271 (35%), Gaps = 57/271 (21%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +  +RP+ +E   GQ  A   ++     +K  +    H+L  GPPG+GKTT A+++  E 
Sbjct: 167 MEKVRPQKMERIVGQERAVEAMR-----SKVASVYPQHILLYGPPGVGKTTAARIILEEA 221

Query: 79  G----------------------VNFRSTSGPVIAKA---------GDLA---------A 98
                                   + R  + P+I             DLA          
Sbjct: 222 KKLPYTPFSVDAPFVETDGTTLRWDARDMTNPLIGSVHDPIYQGARRDLADTGIPEPKPG 281

Query: 99  LLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL----MVGEGPSARSVKINL--- 151
           L+T+     +LFIDEI  +  ++   L   +ED ++           P+  +    L   
Sbjct: 282 LVTDAHGG-ILFIDEIGEMDPLLLNKLLKVLEDKRVKFDSAYYDASDPAVPAYIRKLFAE 340

Query: 152 ---SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAA 208
              + F LI ATTR     NP        +        D++ IV+  A    +++ D   
Sbjct: 341 GAPADFILIGATTRSPQEINPAIRSRCAEVYFEPLNGTDIQAIVRNAAHDLSVSLED-GV 399

Query: 209 CEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
            E         R A  LL  +  +A      
Sbjct: 400 AEYISEFTVEGRKAINLLADMYGYAVYKQGS 430


>gi|299472904|emb|CBN80473.1| EsV-1-182 , RFC small subunit [Ectocarpus siliculosus]
          Length = 326

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 76/226 (33%), Gaps = 25/226 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RPR +++          LK  ++ A+   + L H+LF GPPG GKT+    +AR
Sbjct: 3   PWVEKYRPRRVKDVVHHDH----LKRVLKGAEKTGD-LPHLLFHGPPGTGKTSTILALAR 57

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
            L          +   A D   L       DV+  D+I     +      P    F+L +
Sbjct: 58  TLLGEENMRERVLELNASDERGL-------DVV-RDKIKTFCKMSISSFQPGCPPFKLVI 109

Query: 137 MVGEGPSARSVKINLSR--------FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +          +  L R                 V  +  PL  R     R +    E +
Sbjct: 110 LDEADTMTADAQSALRRTMETQAVVTRFCLVCNYVSKIIAPLASRCA-KFRFSTLTPESM 168

Query: 189 KTIVQRGAKLTGLAVTDEA---ACEIAMRSRGTPRIAGRLLRRVRD 231
           K  +    +   +   + +      I   SRG  R A  LL+ V  
Sbjct: 169 KGRLLYICERENIIFENCSRGVLDAIVKSSRGDMRSAVNLLQTVSQ 214


>gi|284028399|ref|YP_003378330.1| DNA polymerase III subunits gamma and tau [Kribbella flavida DSM
           17836]
 gi|283807692|gb|ADB29531.1| DNA polymerase III, subunits gamma and tau [Kribbella flavida DSM
           17836]
          Length = 1113

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 59/173 (34%), Gaps = 22/173 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T  E  GQ    + L+  +   +         LF GP G GKTT A+++AR
Sbjct: 16  ALYRRYRPETFAEVIGQDHVTAPLRNALSNNRVNHAY----LFSGPRGCGKTTSARILAR 71

Query: 77  ELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAM 129
            +       + P  V     DLA         DV+ ID      +     + E   +  +
Sbjct: 72  AINCEKGPIAQPCGVCKSCTDLA--RGGPGSIDVIEIDAASHGGVDDARDLRERAFFAPV 129

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           E      ++ E             + V+        I ATT    +   ++ R
Sbjct: 130 ESRYKIYIIDEAHMVTTQGFNALLKLVEEPPPHLKFIFATTEPDKVIGTIRSR 182


>gi|167761782|ref|ZP_02433909.1| hypothetical protein BACSTE_00122 [Bacteroides stercoris ATCC
           43183]
 gi|167700288|gb|EDS16867.1| hypothetical protein BACSTE_00122 [Bacteroides stercoris ATCC
           43183]
          Length = 607

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 76/228 (33%), Gaps = 20/228 (8%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T E   GQ    + LK  I   K         LF GP G+GKTT A++ A+ +
Sbjct: 8   ARKYRPSTFESVVGQRALTTTLKNAIATGKLAHAY----LFCGPRGVGKTTCARIFAKTI 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL-----YPAMEDFQ 133
                +  G    +     A        ++  +D     S+     L      P      
Sbjct: 64  NCMSPTAEGEACNQCESCTA-FNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKY 122

Query: 134 LDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
              ++ E             ++++        I ATT    +   +  R  I    N   
Sbjct: 123 KVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQI-YDFNRIS 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           +ED    +   A   G+    EA   IA+++ G  R A  +  +V  F
Sbjct: 182 VEDTVAHLAYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSF 229


>gi|20094804|ref|NP_614651.1| ATPase of the AAA+ class [Methanopyrus kandleri AV19]
 gi|19888016|gb|AAM02581.1| Predicted ATPase of the AAA+ class [Methanopyrus kandleri AV19]
          Length = 336

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 58/244 (23%), Positives = 92/244 (37%), Gaps = 20/244 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA----RAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           TL++  G  EA     + +E  K     R  A   VLF GP G GKT  A+ VA E  V 
Sbjct: 88  TLDDVVGHEEAKRACSLLVEYLKNPEEFRDWAPKTVLFYGPTGTGKTHTARAVAGEAKVP 147

Query: 82  FRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEIHRLS--IIVEEILYPAMED 131
               +   I     G+ +  +     R       V F+DEI  L+     +E+    +E 
Sbjct: 148 LLHMNAAEILGKYVGEASERIRRAFTRARKAAPCVFFLDEIDALALDRRYQELRGDVVES 207

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
               L      +   +K        IAAT +  +L   +++RF   I        + + +
Sbjct: 208 VNALL-----TNLDRLKNEGEGVVFIAATNQPDILDPAVRNRFEYEIEFTLPNKREREEL 262

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPR-IAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           V+  AK   + +  +     A     + R I  R+L+R    A    A+ I R+     L
Sbjct: 263 VRYYAKKLPMPLDVDPRYIAARTGGMSHREIKERVLKRALLEALREGAEKIERKHIQKVL 322

Query: 251 LRLA 254
            +  
Sbjct: 323 NQER 326


>gi|289167756|ref|YP_003446025.1| DNA polymerase III, gamma/tau subunits [Streptococcus mitis B6]
 gi|288907323|emb|CBJ22160.1| DNA polymerase III, gamma/tau subunits [Streptococcus mitis B6]
          Length = 551

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 53/296 (17%), Positives = 90/296 (30%), Gaps = 58/296 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     R +   +  GQ      LK  +E      E + H  LF GP G GKT++A++ A
Sbjct: 4   ALYRKYRSQNFSQLVGQEVVAKTLKQAVE-----QEKISHAYLFSGPRGTGKTSVAKIFA 58

Query: 76  RELGVNFRS------------------------TSGPVIAKAGDLAALLTN------LED 105
           + +    +                                   ++  +         L  
Sbjct: 59  KAMNCPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLAR 118

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
             V  IDE+H LS      L   +E+                         I ATT +  
Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPT------------------QNVVFILATTELHK 160

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           +   +  R       +    + +K  +    +   ++   EA   IA R+ G  R A  +
Sbjct: 161 IPATILSRVQRFEFKSIKTQD-IKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSI 219

Query: 226 LRRVRDFAEVAHAKTITREIADAALLRLAIDKM--GFDQLDL-RYLTMIARNFGGG 278
           L +     +     T   E     +   A+D       Q D+ + L+ +   F  G
Sbjct: 220 LDQALSLTQGNELTTAISEEITGTISLSALDDYVAALSQQDVTKALSCLNLLFDNG 275


>gi|269860791|ref|XP_002650114.1| replication factor C subunit [Enterocytozoon bieneusi H348]
 gi|220066486|gb|EED43966.1| replication factor C subunit [Enterocytozoon bieneusi H348]
          Length = 284

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 73/217 (33%), Gaps = 38/217 (17%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           + +      RP+T+ EF         LK F+ ++        H+L  GPPG GKTT A++
Sbjct: 2   EANLWTDKFRPKTVNEFY----IPEYLKKFLNSSIDT----PHLLLYGPPGSGKTTFAKI 53

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLT---NLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           + R    +    +         +   +        +  + +DE   L+   +  L   +E
Sbjct: 54  LTR--NNHTLFFNASDERGIDFIRNTVKKQAQYVQKKFIVLDECENLTKDSQTCLRRILE 111

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           D+                      T I  T     + +P++ R         Y  + ++ 
Sbjct: 112 DYNTT-------------------TFIFITNYYSKIIDPIKSRTLKLKFNFAYNQQFIEN 152

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
           I Q       +++      E+   S    R    +L+
Sbjct: 153 IAQ------QVSMDPSIIEEVYKYSDKDLRKTLNILQ 183


>gi|157146903|ref|YP_001454222.1| DNA polymerase III subunits gamma and tau [Citrobacter koseri ATCC
           BAA-895]
 gi|157084108|gb|ABV13786.1| hypothetical protein CKO_02679 [Citrobacter koseri ATCC BAA-895]
          Length = 641

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 52/306 (16%), Positives = 107/306 (34%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++   +    + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +A    A   ++  + G+ R A  L     D A  +    ++     A
Sbjct: 184 RHQLEHILNEEHIAHEPRALQLLSRAADGSLRDALSL----TDQAIASGDGQVSTLAVSA 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L  D+       L  +  +    G   + +   +A      +A+   +   + +  
Sbjct: 240 MLGTLDDDQA------LSLVEAVVAANGERVMSLVNDAAARGIEWEALLVEMLGLLHRIA 293

Query: 309 FIQRTP 314
            +Q +P
Sbjct: 294 MVQLSP 299


>gi|189195266|ref|XP_001933971.1| replication factor C subunit 4 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187979850|gb|EDU46476.1| replication factor C subunit 4 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 353

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/242 (17%), Positives = 77/242 (31%), Gaps = 39/242 (16%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   +   RP  L++  G  E    LK+      A+   + H++  G PG+GKTT    +
Sbjct: 28  ELPWVEKYRPVYLDDVVGNTETIERLKII-----AKDGNMPHMIISGMPGIGKTTSILCL 82

Query: 75  AR-----ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDV---------LFIDEIHRLSII 120
           AR              +         +   +     + V         + +DE   ++  
Sbjct: 83  ARQLLGDAYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLAPGRQKLVILDEADSMTSG 142

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            ++ L   ME +                   +RF    A  +   +  PLQ R  I    
Sbjct: 143 AQQALRRTMEIYSAT----------------TRFAF--ACNQSNKIIEPLQSRCAILRYA 184

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA-GRLLRRVRDFAEVAHAK 239
              + + ++ I+Q   +   +  +D+    +   + G  R A   L      F  V    
Sbjct: 185 RLTDAQVVRRIMQ-IVEAEDVKYSDDGIAALVFSAEGDMRQAINNLQSTFAGFGFVNGDN 243

Query: 240 TI 241
             
Sbjct: 244 VF 245


>gi|71745690|ref|XP_827475.1| replication factor C subunit 3 [Trypanosoma brucei TREU927]
 gi|70831640|gb|EAN77145.1| replication factor C, subunit 3, putative [Trypanosoma brucei]
 gi|261331678|emb|CBH14672.1| replication factor C, subunit 3, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 357

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 66/196 (33%), Gaps = 33/196 (16%)

Query: 2   MDREGLLSRNVSQED---ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M  EG LS     ++     +   RP TL++     E     +  + +      ++ H+L
Sbjct: 1   MTGEGTLSNGQPAKNSTLPWVEKYRPTTLDDVVAHEEILDTTRRLMNSG-----SMPHLL 55

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAAL------------------L 100
           F GPPG GKTT  +  A  L    R  +  +   A D   +                   
Sbjct: 56  FYGPPGTGKTTTIKACAHHLFGKERLRANVLEMNASDDRGIDVVRQQVREFASTSSIFFQ 115

Query: 101 TNLEDRDV-----LFIDEIHRLSIIVEEILYPAMEDFQ--LDLMVGEGPSARSVKINLSR 153
            N  ++ V     + +DE  ++S   +  L   +E F   +   +      + +    SR
Sbjct: 116 NNPGNQTVTNFKLVILDEADQMSSDAQAALRRIIEKFTKNVRFCILCNHINKIIPALQSR 175

Query: 154 FTLIAATTRVGLLTNP 169
            T    +        P
Sbjct: 176 CTRFRFSPVKKSAMLP 191


>gi|269793812|ref|YP_003313267.1| DNA polymerase III subunit gamma/tau [Sanguibacter keddieii DSM
           10542]
 gi|269095997|gb|ACZ20433.1| DNA polymerase III, subunit gamma/tau [Sanguibacter keddieii DSM
           10542]
          Length = 872

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 37/104 (35%), Gaps = 8/104 (7%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP    E  GQ      L+  + + +         LF GP G GKTT A+++AR
Sbjct: 4   ALYRRYRPENFAEVIGQEHVTDPLRQALRSDRVNHAY----LFSGPRGCGKTTSARILAR 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR----DVLFIDEIHR 116
            L     +   P     G+  +            DV+ ID    
Sbjct: 60  ILNCAKNTPETPTDTPCGECESCTELARGGPGSLDVVEIDAASH 103


>gi|271499625|ref|YP_003332650.1| DNA polymerase III subunits gamma and tau [Dickeya dadantii Ech586]
 gi|270343180|gb|ACZ75945.1| DNA polymerase III, subunits gamma and tau [Dickeya dadantii
           Ech586]
          Length = 675

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 59/306 (19%), Positives = 106/306 (34%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKTT+A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTTIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGVTATPCGQCDTCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++   S    + ATT    L   +  R  +   L   + E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPSHVKFLLATTDPQKLPVTILSRC-LQFHLKALDAEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  +Q+  +   LA    A   +A  + G+ R A  L     D A       +T      
Sbjct: 184 RQHLQQVLEQEQLAAEPRALQLLARAADGSLRDALSL----TDQAIAMGQGQVTAAAVSE 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L       D+  L  +  + +  G G + +   SA      +A+       + +  
Sbjct: 240 MLGTLD------DEQPLGLIEALVKGDGAGVMALMEQSAVRGTDWEALLVETLTLLHRIA 293

Query: 309 FIQRTP 314
            +Q  P
Sbjct: 294 MLQLLP 299


>gi|225716862|gb|ACO14277.1| Replication factor C subunit 5 [Esox lucius]
          Length = 335

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 68/223 (30%), Gaps = 39/223 (17%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           S+    +   RP+TL++     +  S ++ FI       + L H+LF GPPG GK +   
Sbjct: 11  SRNLPWVEKYRPQTLDDLISHKDILSTIQKFIS-----EDRLPHLLFYGPPGTGKISTIL 65

Query: 73  VVA------RELGVNFRSTSGPVIAKAGDLAA-LLTNLEDRDVL-------FIDEIHRLS 118
             A      +E        +         +   +L+    R +         +DE   ++
Sbjct: 66  ACAKQLYKDKEFNAMVLELNASDDRGIDVVRGPILSFASTRTIFKKGFKLVILDEADAMT 125

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
              +  L   +E +       E      +   LS+      +        PL     IP 
Sbjct: 126 RDAQNALRRVIEKY------TENTRFCLICNYLSKIIPALQSRCTRSRFGPLSQDQMIPR 179

Query: 179 RLNFY-------EIEDLKTIV-------QRGAKLTGLAVTDEA 207
             +           + +K IV       +R   +         
Sbjct: 180 LEHVIQQESIDVTPDGMKAIVTLSSGDMRRSLNILQSTSMAYG 222


>gi|225023623|ref|ZP_03712815.1| hypothetical protein EIKCOROL_00483 [Eikenella corrodens ATCC
           23834]
 gi|224943505|gb|EEG24714.1| hypothetical protein EIKCOROL_00483 [Eikenella corrodens ATCC
           23834]
          Length = 754

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/298 (14%), Positives = 82/298 (27%), Gaps = 66/298 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ      L    + A  +       L  G  G+GKTT+A+++A+ L    
Sbjct: 11  RPKTFADLVGQEHVVKAL----QNALGKGRLHHAYLLTGTRGVGKTTIARILAKSLNCET 66

Query: 83  RST------------------------SGPVIAKAGDLAALLTNLE------DRDVLFID 112
                                               ++  +L N +         V  ID
Sbjct: 67  PHEGEPCGQCQSCRDIDAGRFVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIID 126

Query: 113 EIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           E+H LS      +   +E+    +  ++      +     LSR                 
Sbjct: 127 EVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNM-------- 178

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
                          + +   +        +     A   +   + G+ R A  LL    
Sbjct: 179 -------------TAQQVSQHLAHVLTSEQIPYEAPALALLGRAAAGSMRDALSLL---- 221

Query: 231 DFAEVAHAKTITREIADAALLRLAIDKM-----GFDQLDLRYLTMIARNFGGGPVGIE 283
           D A    + ++T       +  +    +          D   L   A+   G  +G +
Sbjct: 222 DQAIAMGSGSVTEADVRQMIGAVDQHYLYSLLQAAANQDGAVLLATAQEMAGRAIGFD 279


>gi|171912028|ref|ZP_02927498.1| DNA polymerase III, gamma and tau subunits [Verrucomicrobium
           spinosum DSM 4136]
          Length = 676

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 51/256 (19%), Positives = 81/256 (31%), Gaps = 53/256 (20%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RPRT E+  GQ      L+  I    A+       LFVGP G GKT+ A++ A+ L
Sbjct: 21  ARKYRPRTFEDVLGQDHVVRTLRNAI----AQNRLAHAYLFVGPRGTGKTSTARIFAKAL 76

Query: 79  GVNF------------------------RSTSGPVIAKAGDLAALLTNLE------DRDV 108
                                       R   G        +  L   ++         +
Sbjct: 77  NCPNGPRVDFDPDDEVCVEIEKGISLDVREIDGASNNGVEQVRELREEVKFAPTRCRYKI 136

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
            +IDE+H LS      L   +E+                         I ATT    +  
Sbjct: 137 YYIDEVHMLSTAAFNALLKTLEE------------------PPEHVKFIFATTEAHKVLP 178

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            +  R      L       +   +   A L  +A++++AA  IA  + G  R A  +L +
Sbjct: 179 TIISRCQ-RFDLRRIPAGLIAKHLLHIATLEKVALSEKAAYAIAKGAEGGMRDAQSMLDQ 237

Query: 229 VRDFAEVAHAKTITRE 244
           +  F      +    +
Sbjct: 238 LVAFCGERIEEQDVLD 253


>gi|91081833|ref|XP_974716.1| PREDICTED: similar to replication factor C, 37-kDa subunit,
           putative [Tribolium castaneum]
 gi|270006308|gb|EFA02756.1| hypothetical protein TcasGA2_TC008489 [Tribolium castaneum]
          Length = 355

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 75/234 (32%), Gaps = 44/234 (18%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RPRT+ +   Q EA S L+  I  A      L ++LF GPPG GKT+     AR
Sbjct: 31  PWVEKYRPRTVSDVVEQSEAVSVLQQCISGAD-----LPNLLFYGPPGTGKTSTILAAAR 85

Query: 77  ELGVNFRSTS-----------GPVIAKAGDLAALLTNLEDRD---------VLFIDEIHR 116
           +L  ++                 VI       A LT    R          ++ +DE   
Sbjct: 86  QLFGDYYRDRILELNASDERGIQVIRDKVKTFAQLTASGTRPDGKPCPPFKIVILDEADS 145

Query: 117 LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
           ++   +  L   ME             +RS +  L           V  +  PL  R   
Sbjct: 146 MTHAAQAALRRTMEK-----------ESRSTRFCL-------ICNYVSRIIEPLTSRC-T 186

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
             R        +   +        +  +D+    +   S G  R A   L+   
Sbjct: 187 KFRFKPLNEAMILERLSFICGKENVECSDKTLAALVETSGGDMRRAITSLQSCA 240


>gi|324500315|gb|ADY40152.1| Replication factor C subunit 2 [Ascaris suum]
          Length = 364

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 48/262 (18%), Positives = 87/262 (33%), Gaps = 45/262 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+ L++  G   A   L +F     A+   L +++  GPPG GKTT    +AR
Sbjct: 47  PWLEKYRPQKLQDVVGNKLAIQRLGMF-----AKQGNLPNIVISGPPGCGKTTSIWALAR 101

Query: 77  ------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIHRLSIIVE 122
                       EL  +       V  K    A    +L      ++ +DE   ++   +
Sbjct: 102 ELLGTQIREACLELNASDDRGIDVVRNKIKSFAQTKVSLPEGRHKIIILDEADSMTEGAQ 161

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           + L   ME +           +++ +  LS         +   +  P+Q R  I      
Sbjct: 162 QALRRTMEIY-----------SKTTRFALS-------CNQSDKIIEPIQSRCAILRFSKL 203

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR-RVRDFAEVAHAKTI 241
            + E    ++Q       +   +     +   ++G  R A   L+  V  F +V      
Sbjct: 204 KDEEIATRLLQ-VCTYEQVVYDESGIDALIFTAQGDMRQALNNLQCTVAGFKQVTADNVF 262

Query: 242 ------TREIADAALLRLAIDK 257
                   E+    L     +K
Sbjct: 263 KVCDEPHPEMIKKMLELCVREK 284


>gi|255014495|ref|ZP_05286621.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. 2_1_7]
          Length = 586

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 80/228 (35%), Gaps = 20/228 (8%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T     GQ    + LK  I++ K         LF GP G+GKT+ A++ A+ +
Sbjct: 8   ARKYRPSTFRSVVGQKSLTTTLKNAIQSNKLAHAY----LFCGPRGVGKTSCARIFAKTI 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI------IVEEILYPAMEDF 132
                +  G          A        ++  +D     S+      I +  + P +  +
Sbjct: 64  NCLNPTADGEACNACESCRA-FNEQRSYNIHELDAASNNSVDDIRTLIDQVRIPPPIGKY 122

Query: 133 QLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           ++ ++               ++++        I ATT    +   +  R  I        
Sbjct: 123 KVFIIDEVHMLTTAAFNAFLKTLEEPPHHALFILATTEKHKVLPTILSRCQIYDFSRI-S 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           I D+   +Q  +   G+    EA   IA ++ G  R A  +  +V  F
Sbjct: 182 IADMVEHLQYVSSQEGVTAEPEALNVIAQKADGGMRDALSIFDQVVSF 229


>gi|225431489|ref|XP_002274730.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 848

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 56/250 (22%), Positives = 94/250 (37%), Gaps = 23/250 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE-------ALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++F GQ      L+  +   K   E           VL  GPPG GKT LA+ +A E 
Sbjct: 307 TFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA 366

Query: 79  GVNFRSTSGP---------VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           G+ F + +G            ++  DL A   +     ++FIDEI  +            
Sbjct: 367 GLPFFAANGTDFVEMFVGVAASRVKDLFASARSFSP-SIIFIDEIDAIGSKRGGPDIGGG 425

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
              +   ++         K++ ++  +I AT R+ +L   L    RF   IR+     + 
Sbjct: 426 GAEREQGLLQILTEMDGFKVSTAQVLVIGATNRLDILDPALLRKGRFDKIIRVGLPSKDG 485

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT----ITR 243
              I++  A+       +E    +   +  T    G  L+ + + A +  A+     I R
Sbjct: 486 RLAILKVHARNKFFRSEEEKEALLQEIAELTEDFTGAELQNILNEAGILTARKDLDYIGR 545

Query: 244 EIADAALLRL 253
           E    AL R 
Sbjct: 546 EELLEALKRQ 555


>gi|313229768|emb|CBY18583.1| unnamed protein product [Oikopleura dioica]
          Length = 350

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 49/239 (20%), Positives = 85/239 (35%), Gaps = 45/239 (18%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLK-VFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
             I   RP+ + +   Q E  + LK V IE      + L ++LF GPPG GKT+    +A
Sbjct: 28  PWIEKYRPKGVNDVCAQEEVVAMLKAVLIE-----GKELPNMLFYGPPGTGKTSTILAMA 82

Query: 76  R------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD--------VLFIDEIH 115
           R            EL  +       V  K  + A    N +  D        ++ +DE  
Sbjct: 83  RDMFGNLASERVCELNASDERGIAVVREKVKNFAMTTANSQRADGKKCPNFKLIILDEAD 142

Query: 116 RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
            ++   +E L   ME +           ++S +  L           V  + +P+  R  
Sbjct: 143 SMTKSAQEALRRTMEVY-----------SKSTRFCL-------LCNYVSRIIDPITSRTA 184

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
              R      E     ++   +   + +++ A  E+   + G  R A   L+ +    E
Sbjct: 185 -KFRFRLLPKEIQYNQIRHIREAENVQISENAVEELISVAAGDMRRAVNFLQSLHRLHE 242


>gi|296224812|ref|XP_002758207.1| PREDICTED: replication factor C subunit 4 [Callithrix jacchus]
          Length = 363

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 77/234 (32%), Gaps = 45/234 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+ ++E   Q E  + LK  +E A      L ++LF GPPG GKT+     AR
Sbjct: 39  PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGAD-----LPNLLFYGPPGTGKTSTILAAAR 93

Query: 77  -------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD--------VLFIDEIH 115
                        EL  +       V  K  + A L  +    D        ++ +DE  
Sbjct: 94  ELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEAD 153

Query: 116 RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
            ++   +  L   ME                     +RF        V  +  PL  R  
Sbjct: 154 SMTSAAQAALRRTMEKESKT----------------TRF--CLICNYVSRIIEPLTSRCS 195

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
              R      +  +  +   A+   + ++DE    +   S G  R A   L+  
Sbjct: 196 -KFRFKPLSDKIQQQRLLDIAERENVKISDEGIAYLVKVSEGDLRKAITFLQSA 248


>gi|77917989|ref|YP_355804.1| DNA polymerase III subunits gamma/tau [Pelobacter carbinolicus DSM
           2380]
 gi|77544072|gb|ABA87634.1| DNA polymerase III, tau subunit [Pelobacter carbinolicus DSM 2380]
          Length = 582

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/271 (16%), Positives = 90/271 (33%), Gaps = 23/271 (8%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP++ ++  GQ      L   I+  +         LF G  G+GKT+ A++ A+ L
Sbjct: 7   ARKYRPQSFDDLVGQEHVSQTLGNAIKTGRVHHA----FLFTGARGVGKTSAARIFAKAL 62

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL------YPAMEDF 132
                    P           ++  +  DV  ID      +     L       P+   +
Sbjct: 63  NCE--QGLSPQPCNVCQSCREISAGQGLDVFEIDGASNTGVDDIRELRENIRYLPSRSRY 120

Query: 133 QLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           ++ ++               ++++        I ATT    +   +  R           
Sbjct: 121 KIFIIDEVHMLSTNAFNALLKTLEEPPEHAKFIFATTEPHKIPITILSRCQ-RFDFRKIP 179

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +  +   ++  A   G+++++ +   +A R  G+ R A     +V  F   A  +   + 
Sbjct: 180 LPLIVARLKEIAAAEGISISERSLGLVARRGEGSMRDAQSTFDQVIAFCGDAVGEDDVQG 239

Query: 245 IADAALLRLAIDKMG--FDQLDLRYLTMIAR 273
           +      RL +D +         R L  + R
Sbjct: 240 LLGMVDRRLLVDTLESLLGHDSRRLLHCVCR 270


>gi|295672510|ref|XP_002796801.1| replication factor C subunit 2 [Paracoccidioides brasiliensis Pb01]
 gi|226282173|gb|EEH37739.1| replication factor C subunit 2 [Paracoccidioides brasiliensis Pb01]
          Length = 404

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/236 (18%), Positives = 79/236 (33%), Gaps = 53/236 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR------ 76
           RP+TL++   Q    + L+  ++A+      L H+LF GPPG GKT+    +++      
Sbjct: 51  RPKTLDDVASQEHTITVLQRTLQAS-----NLPHMLFYGPPGTGKTSTILALSKSLFGPQ 105

Query: 77  -------ELGVNFRSTSGPVIAKAGDLAALLTNL--------------EDRDVLFIDEIH 115
                  EL  +       V  K  D A +  +                   ++ +DE  
Sbjct: 106 LYRSRILELNASDERGISIVREKIKDFARMQLSHPPVSDTAYCEKYPCPPFKIIILDEAD 165

Query: 116 RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA-TTRVGLLTNPLQDRF 174
            ++   +  L   ME +                   SR T        V  + +PL  R 
Sbjct: 166 SMTQDAQSALRRTMERY-------------------SRITRFCLVCNYVTRIIDPLASRC 206

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
               R    +     + ++  A++  L + D     +   S G  R A   ++   
Sbjct: 207 S-KFRFKALDGSAAGSRLEEIARVEKLRLADGCIETLIRCSEGDLRRAITFMQSAA 261


>gi|116074345|ref|ZP_01471607.1| DNA polymerase, gamma and tau subunits [Synechococcus sp. RS9916]
 gi|116069650|gb|EAU75402.1| DNA polymerase, gamma and tau subunits [Synechococcus sp. RS9916]
          Length = 679

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 84/221 (38%), Gaps = 19/221 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  ++  GQ    + L   + + +         LF GP G GKT+ A+++AR L    
Sbjct: 13  RPQRFDQLVGQNAIAATLGHALRSNRIA----PAYLFSGPRGTGKTSSARILARSLNCLS 68

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P    + +L   +      DV+ ID      +  +  ++E   +  ++      +
Sbjct: 69  SDGPTPEPCGSCELCTTIAAGTALDVIEIDAASNTGVDNIRDLIERSRFAPVQARWKVYV 128

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           V E             ++++    R   + ATT    +   +  R           ++ L
Sbjct: 129 VDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTILSRCQ-RFDFRRIPLDAL 187

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           +  +   A+   + +  EA   +A R++G  R A  LL ++
Sbjct: 188 EAHLTWIAEQEAIPIQPEAVHVVAQRAQGGLRDAESLLDQL 228


>gi|255070803|ref|XP_002507483.1| replication factor c, subunit 2 [Micromonas sp. RCC299]
 gi|226522758|gb|ACO68741.1| replication factor c, subunit 2 [Micromonas sp. RCC299]
          Length = 334

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 73/226 (32%), Gaps = 38/226 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP  +++  G  +A   L      A A    + +++F GPPG+GKTT    +A 
Sbjct: 11  PWVEKYRPTKIDDIVGNKDAVDRL-----TAIASTGNMPNLIFTGPPGIGKTTSVLCLAH 65

Query: 77  ------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIHRLSIIVE 122
                       EL  +       V  K    A     L      ++ +DE   ++   +
Sbjct: 66  TLLGPSYKDAVLELNASDDRGIDAVRNKIKMFAQKKVTLPPGRHKIILLDEADSMTSAAQ 125

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           + L   ME +                   S      A      +  P+Q R  I      
Sbjct: 126 QALRRTMELYS------------------STTRFALACNASEKIIEPIQSRCAIVRFTRL 167

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            + E L+ IV+   +   +    +    +   + G  R A   ++ 
Sbjct: 168 SDQEVLERIVK-VVEREEVPYVPDGLEAVVFTADGDMRQALNNVQA 212


>gi|238926315|ref|ZP_04658075.1| DNA polymerase III, subunits gamma and tau [Selenomonas flueggei
           ATCC 43531]
 gi|238885719|gb|EEQ49357.1| DNA polymerase III, subunits gamma and tau [Selenomonas flueggei
           ATCC 43531]
          Length = 615

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 92/249 (36%), Gaps = 29/249 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP    +  GQ      L   + + +         LF GP G GKT+ A+++AR L    
Sbjct: 11  RPERFADLVGQEHISRTLSRAVTSGQISHAY----LFTGPRGTGKTSTAKILARALNC-- 64

Query: 83  RSTSGPVIAKAG--DLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLD 135
               GP +   G  D    +++    DV  ID      I  +  + E + +   E     
Sbjct: 65  --AEGPTLTPCGHCDSCRSISDGSSMDVFEIDAASNRGIDEIRDLRESVKFAPTEGLYKI 122

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             ++++    R   I ATT    +   +Q R       +   + 
Sbjct: 123 YIIDEVHMLTTEAFNALLKTLEEPPERVIFILATTEPHKVPATIQSRCQ-RYDFHRITVT 181

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           ++   +    K +G+   ++A   IA+++ G  R A  +L +    AE     T+T E  
Sbjct: 182 EICDRLIYVCKESGIEAEEDALGIIAVQADGGMRDALSILDQCTALAE----GTLTAERV 237

Query: 247 DAALLRLAI 255
             AL  +  
Sbjct: 238 QEALGLVGR 246


>gi|170027981|ref|XP_001841875.1| replication factor C subunit 2 [Culex quinquefasciatus]
 gi|167868345|gb|EDS31728.1| replication factor C subunit 2 [Culex quinquefasciatus]
          Length = 344

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 50/254 (19%), Positives = 86/254 (33%), Gaps = 39/254 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             I   RP+  EE  G  +  S L VF     A      +++  GPPG+GKTT    +AR
Sbjct: 29  PWIEKYRPQKFEEIVGNEDTVSRLGVFATQGNA-----PNIIIAGPPGVGKTTTILCLAR 83

Query: 77  ------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIHRLSIIVE 122
                       EL  +       V  K    A     L      ++ +DE   ++   +
Sbjct: 84  ILLGENFREAVLELNASNERGIDVVRNKIKMFAQQKVTLPRGRHKIVILDEADSMTEGAQ 143

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           + L   ME +                 N +RF L   T+    +  P+Q R  +      
Sbjct: 144 QALRRTMEIYS----------------NTTRFALACNTSE--KIIEPIQSRCAMLRYSKL 185

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA-GRLLRRVRDFAEVAHAKTI 241
            + + L  +++   +   L+  ++    I   ++G  R A   L      F  ++ A   
Sbjct: 186 SDSQVLAKLIE-ICQKEALSYDEDGLEAIVFTAQGDMRQALNNLQSTANGFGHISGANVF 244

Query: 242 TREIADAALLRLAI 255
                   +L   +
Sbjct: 245 KVCDEPHPMLVQDM 258


>gi|326329503|ref|ZP_08195827.1| DNA polymerase III, subunits gamma and tau [Nocardioidaceae
           bacterium Broad-1]
 gi|325952829|gb|EGD44845.1| DNA polymerase III, subunits gamma and tau [Nocardioidaceae
           bacterium Broad-1]
          Length = 667

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 75/231 (32%), Gaps = 29/231 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T  E  GQ      L+  +   +         LF GP G GKTT A+++AR
Sbjct: 112 ALYRRYRPETFAEVIGQDHVTGPLRNALAGNRVNHAY----LFSGPRGCGKTTSARILAR 167

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR----DVLFID-----EIHRLSIIVEEILYP 127
            L         P+    G+  +            DV+ ID      +     + E+  + 
Sbjct: 168 ALNCEK----APIADPCGECDSCRDLARGGPGSIDVIEIDAASHGGVDDARDLREKAFFA 223

Query: 128 AMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDR---FG 175
            ++      ++ E             + V+        I ATT    +   ++ R   + 
Sbjct: 224 PVKSRYKVYIIDEAHMVSTQGFNALLKLVEEPPEHLRFIFATTEPEKVIPTIRSRTHHYP 283

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
             +       + + T+ ++       A     A   A   R +  +  +LL
Sbjct: 284 FRLFPPKLVSDYIATLCEKEGINVEPAALPLVARAGAGSMRDSLSVMDQLL 334


>gi|297845144|ref|XP_002890453.1| EMB1968 [Arabidopsis lyrata subsp. lyrata]
 gi|297336295|gb|EFH66712.1| EMB1968 [Arabidopsis lyrata subsp. lyrata]
          Length = 339

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 49/244 (20%), Positives = 82/244 (33%), Gaps = 46/244 (18%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           ++  +      +   RP+ +++   Q E    L   ++ A        H+LF GPPG GK
Sbjct: 1   MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADC-----PHMLFYGPPGTGK 55

Query: 68  TTLAQVVAR-------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------- 106
           TT A  +A              EL  +       V  K  D AA+      R        
Sbjct: 56  TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPS 115

Query: 107 -DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
             ++ +DE   ++   +  L   ME +                  ++RF  I     +  
Sbjct: 116 FKIIILDEADSMTEDAQNALRRTMETYS----------------KVTRFFFIC--NYISR 157

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           +  PL  R     R      E +   +       GL++  EA   ++  S+G  R A   
Sbjct: 158 IIEPLASRCA-KFRFKPLSEEVMSNRILHICNEEGLSLGGEALSTLSSISQGDLRRAITY 216

Query: 226 LRRV 229
           L+  
Sbjct: 217 LQSA 220


>gi|114052583|ref|NP_001039359.1| replication factor C subunit 4 [Bos taurus]
 gi|88954368|gb|AAI14042.1| Replication factor C (activator 1) 4, 37kDa [Bos taurus]
 gi|296491286|gb|DAA33349.1| replication factor C 4 [Bos taurus]
          Length = 337

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 76/234 (32%), Gaps = 45/234 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+ ++E   Q E  + LK  +E A      L ++LF GPPG GKT+     AR
Sbjct: 39  PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGAD-----LPNLLFYGPPGTGKTSTILAAAR 93

Query: 77  -------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD--------VLFIDEIH 115
                        EL  +       V  K  + A L  +    D        ++ +DE  
Sbjct: 94  ELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEAD 153

Query: 116 RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
            ++   +  L   ME                     +RF        V  +  PL  R  
Sbjct: 154 SMTSAAQAALRRTMEKESKT----------------TRF--CLICNYVSRIIEPLTSRCS 195

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
              R      +  +  +   A    + +++E    +   S G  R A   L+  
Sbjct: 196 -KFRFKPLSDKIQQQRLLDIADKEHVKISNEGIAYLVQVSEGDLRKAITFLQSA 248


>gi|294788405|ref|ZP_06753648.1| DNA polymerase III, subunits gamma and tau [Simonsiella muelleri
           ATCC 29453]
 gi|294483836|gb|EFG31520.1| DNA polymerase III, subunits gamma and tau [Simonsiella muelleri
           ATCC 29453]
          Length = 654

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/271 (15%), Positives = 81/271 (29%), Gaps = 59/271 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T  +  GQ      L+  ++  +     L H  L  G  G+GKTT+A+++A+ L   
Sbjct: 12  RPKTFADLVGQQHVVKALQNALDKGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCE 66

Query: 82  FRS------------------------TSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                                ++  +L N +         V  I
Sbjct: 67  NAQHGEPCGVCQSCRDIDAGRFVDLLEIDAASNTGIDNIREVLENAQYAPTVGKYKVYII 126

Query: 112 DEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+H LS      +   +E+    +  ++      +     LSR                
Sbjct: 127 DEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPITVLSRCLQFVLRN-------- 178

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
                           + +   +    K   +     A   +   ++G+ R A  LL + 
Sbjct: 179 -------------LTPQQVTAHLTHVLKTEQIVYEPNALALLGYAAQGSMRDALSLLDQA 225

Query: 230 RDFAEVAHAKTITREIADAALLRLAIDKMGF 260
                 +  +   RE+  A   R   + + F
Sbjct: 226 IAMGSGSVQERDVREMIGAVDKRYLYELLTF 256


>gi|168700663|ref|ZP_02732940.1| DNA polymerase III gamma and tau subunits [Gemmata obscuriglobus
           UQM 2246]
          Length = 614

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 53/256 (20%), Positives = 90/256 (35%), Gaps = 29/256 (11%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+   E  GQ      L   +++ +         LF G  G+GKT+ A+++A+ L
Sbjct: 21  ARRYRPQQFSELIGQEHVAGALVNALKSGRVAHAY----LFTGARGVGKTSAARILAKAL 76

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII------VEEILYPAMEDF 132
                  + P      D    +   +D DVL ID      +             PA   +
Sbjct: 77  NCLKTDKATPTPCDECDSCRAVMTGDDVDVLEIDGASNNKVEEVRDLRQNVGFRPARGRY 136

Query: 133 QLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           ++ ++               ++++        I ATT V  +   +  R       +   
Sbjct: 137 KIYIIDEVHMLSTSAFNALLKTLEEPPEHVKFILATTEVQKIPITILSRCQRFDFAHVGP 196

Query: 185 ---IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
               E LK IV+R     G    D+A   +A R+ G+ R +  LL    D    + + T+
Sbjct: 197 GKIFEQLKRIVER----EGHQADDDALRLVARRAAGSMRDSQSLL----DQLLASSSGTL 248

Query: 242 TREIADAALLRLAIDK 257
           T     A L     D+
Sbjct: 249 TAGQVTAVLGTAGDDR 264


>gi|123482551|ref|XP_001323818.1| ATPase, AAA family protein [Trichomonas vaginalis G3]
 gi|121906690|gb|EAY11595.1| ATPase, AAA family protein [Trichomonas vaginalis G3]
          Length = 325

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 70/189 (37%), Gaps = 26/189 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+ L++   Q EA   LK  +E        L H++F GPPG GKT+LA  + R
Sbjct: 9   PWVEKYRPKNLDDIVQQEEAVKALKTTLETGD-----LPHLIFHGPPGTGKTSLALALCR 63

Query: 77  ------------ELGVNFRSTSGPVIAKAGDLAALLTNLED--RDVLFIDEIHRLSIIVE 122
                       EL  +       V +   + A+L          ++ +DE   ++   +
Sbjct: 64  SLFGDDFRLRVKELNASDERGIDAVRSSIKEFASLAVPNGKIPFKIVILDEADSMTSAAQ 123

Query: 123 EILYPAMEDFQ--LDLMVGEGPSARSVKINLS-----RFTLIAATTRVGLLTNPLQDRFG 175
             L   +E +      ++     ++ +   LS     RF  +     +  L    +D+  
Sbjct: 124 NALRRIIETYSSVTRFIIICNYVSKIIDPILSRCAKFRFKPLDRPAIIERLHKIFEDQNL 183

Query: 176 IPIRLNFYE 184
                + YE
Sbjct: 184 SVDSEDTYE 192


>gi|225010717|ref|ZP_03701186.1| DNA polymerase III, subunits gamma and tau [Flavobacteria bacterium
           MS024-3C]
 gi|225005088|gb|EEG43041.1| DNA polymerase III, subunits gamma and tau [Flavobacteria bacterium
           MS024-3C]
          Length = 610

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 80/248 (32%), Gaps = 42/248 (16%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP   E+  GQ    + L+  I+           +LF GP G+GKT+ A+++A+++
Sbjct: 8   ARKYRPLNFEDVVGQSAITNTLEKSIDNNHLAQA----LLFCGPRGVGKTSCARILAKKI 63

Query: 79  G-------------VNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSI 119
                          N             D+  L+  +          V  IDE+H LS 
Sbjct: 64  NEKELGTSTEEDYAFNIFELDAASNNSVDDIRNLVDQVRIPPQKGAYKVYIIDEVHMLST 123

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
                    +E+                         I ATT    +   +  R  I   
Sbjct: 124 AAFNAFLKTLEE------------------PPKHAIFILATTEKHKIIPTILSRCQIYDF 165

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
                + D+   + + A   G+    +A   IA ++ G  R A  +  R+  +     ++
Sbjct: 166 KRI-TVTDMALHLGKIAADQGITAHPDALHLIAQKADGALRDALSIFDRIVSYTAENLSR 224

Query: 240 TITREIAD 247
               E  +
Sbjct: 225 QAVSENLN 232


>gi|218892512|ref|YP_002441379.1| DNA polymerase III subunits gamma and tau [Pseudomonas aeruginosa
           LESB58]
 gi|218772738|emb|CAW28523.1| DNA polymerase subunits gamma and tau [Pseudomonas aeruginosa
           LESB58]
          Length = 699

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 62/313 (19%), Positives = 95/313 (30%), Gaps = 37/313 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPR+  E  GQ      LK  I A     + L H  LF G  G+GKTT+A+++A+ L   
Sbjct: 11  RPRSFREMVGQTHV---LKALINA--LDNQRLHHAYLFTGTRGVGKTTIARILAKCLNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEIL-----YPAMEDFQL 134
              +S P     G+ +      E R  D++ +D   R  +     L     Y        
Sbjct: 66  TGVSSTP----CGECSVCREIDEGRFVDLIEVDAASRTKVEDTRELLDNVQYSPTRGRYK 121

Query: 135 DLMVGEGPSARSVKIN---------LSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             ++ E     S   N               + ATT    L   +  R  +   L     
Sbjct: 122 VYLIDEVHMLSSHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSRC-LQFSLKNMPP 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           E +   +        +   D+A   +   + G+ R A  L     D A       +    
Sbjct: 181 ERVVEHLTHVLGAENVPFEDDALWLLGRAADGSMRDAMSL----TDQAIAFGEGKVLAAD 236

Query: 246 ADAAL-LRLAIDKMG-----FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
             A L         G      +      L  +      GP     ++  L+         
Sbjct: 237 VRAMLGTLDHGQVYGVLQALLEGDARALLEAVRHLAEQGPDWGGVLAEILNVLHRVAIAQ 296

Query: 300 IEPYMIQQGFIQR 312
             P  I  G   R
Sbjct: 297 ALPEAIDNGQGDR 309


>gi|291005087|ref|ZP_06563060.1| putative DNA polymerase III gamma subunit [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 529

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/239 (17%), Positives = 78/239 (32%), Gaps = 27/239 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T  E  GQ      L+  + + +         LF GP G GKT+ A+++AR
Sbjct: 4   ALYRKYRPATFAEVVGQEHVTEPLRTALASGRINHAY----LFSGPRGCGKTSSARILAR 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR----DVLFIDEIHRLSIIVEEILY------ 126
            L        GP     G+  + +    +     DV+ +D      +     L       
Sbjct: 60  SLNC----AQGPTADPCGECDSCVALAPEGGGSVDVVELDAASHGGVDDTRELRDRAFFA 115

Query: 127 PAMEDFQLDLMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
           PA   +++ ++         G     + V+        + ATT    +   ++ R     
Sbjct: 116 PAQSRYRIFIIDEAHMVTTQGFNALLKIVEEPPEHLIFVFATTEPDKVLTTIRSR-THHY 174

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                    ++ +++R      + V       +     G+ R    +L ++   A    
Sbjct: 175 PFRLMPPGVMRELLERICDQESVRVEPAVYPLVLRAGGGSARDTLSVLDQLLAGAGEEG 233


>gi|156379406|ref|XP_001631448.1| predicted protein [Nematostella vectensis]
 gi|156218489|gb|EDO39385.1| predicted protein [Nematostella vectensis]
          Length = 401

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 51/256 (19%), Positives = 81/256 (31%), Gaps = 39/256 (15%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   +   RP  L E  G  E  S L+VF     A+   + +++  GPPG GKTT    +
Sbjct: 52  ELPWVEKYRPTKLHEIVGNEETVSRLEVF-----AQQGNVPNIIIAGPPGTGKTTSILCL 106

Query: 75  AR------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIHRLSII 120
           AR            EL  +       V  K    A     L      ++ +DE   ++  
Sbjct: 107 ARALLGVSLKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDG 166

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            ++ L   ME +                   +RF L   T+    +   +Q R  I    
Sbjct: 167 AQQALRRTMEIYSKT----------------TRFALACNTS--DKIIEAIQSRCAILRYT 208

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA-GRLLRRVRDFAEVAHAK 239
              + + L  +++       +   D+    I   + G  R A   L      F  V    
Sbjct: 209 RLTDAQVLTRLLE-ICDKEQVPKVDDGLEAIIFTAEGDMRQAINNLQSTYYGFGMVNSEN 267

Query: 240 TITREIADAALLRLAI 255
                     LL   +
Sbjct: 268 VFKVCDEPHPLLIKEM 283


>gi|311280618|ref|YP_003942849.1| DNA polymerase III, subunits gamma and tau [Enterobacter cloacae
           SCF1]
 gi|308749813|gb|ADO49565.1| DNA polymerase III, subunits gamma and tau [Enterobacter cloacae
           SCF1]
          Length = 641

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 55/318 (17%), Positives = 109/318 (34%), Gaps = 31/318 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        A        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLASGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDNCREIELGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++   S    + ATT    L   +  R  +   L   +++ +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPSHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVDQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++       +     A   +A  + G+ R A  L     D A  +    +T +    
Sbjct: 184 RAQLEHILGEEKINFESRALQLLARAAEGSLRDALSL----TDQAIASGDGQLTAQTVST 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L       D   L  +  +    G   + +   +A      +A+   ++  + +  
Sbjct: 240 MLGTLD------DAQALSLIEALVAADGERVMTLIHDAASRGAEWEALLVEMQSLLHRIA 293

Query: 309 FIQRTPRGRLLMPIAWQH 326
            +Q +P        A +H
Sbjct: 294 MVQLSPSALGSDMAAVEH 311


>gi|194098698|ref|YP_002001760.1| DNA polymerase III subunits gamma and tau [Neisseria gonorrhoeae
           NCCP11945]
 gi|193933988|gb|ACF29812.1| DNA polymerase III subunits gamma and tau [Neisseria gonorrhoeae
           NCCP11945]
 gi|317164296|gb|ADV07837.1| DNA polymerase III subunits gamma and tau [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 736

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 49/303 (16%), Positives = 89/303 (29%), Gaps = 63/303 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T  +  GQ      L+  ++  +     L H  L  G  G+GKTT+A+++A+ L   
Sbjct: 40  RPKTFSDLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCE 94

Query: 82  FRS------------------------TSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                                ++  +L N +         V  I
Sbjct: 95  NAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYII 154

Query: 112 DEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+H LS      +   +E+    +  ++      +     LSR                
Sbjct: 155 DEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNM------- 207

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
                           + +   +        +A    A   +   + G+ R A  LL + 
Sbjct: 208 --------------TAQQVADHLAHVLDSEKIAYDPPALQLLGRAAAGSMRDALSLLDQA 253

Query: 230 RDFAEVAHAKTITREIADAALLRLAIDKM-GFDQLDLRYLTMIARNFGGGPVGIETISAG 288
                   A+   R++  A   +   + + G    D   L   A+      VG +     
Sbjct: 254 IALGSGKVAENDVRQMIGAVDKQYLYELLTGIVNQDGEALLAKAQEMAACAVGFDN---A 310

Query: 289 LSE 291
           L E
Sbjct: 311 LGE 313


>gi|253565020|ref|ZP_04842476.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. 3_2_5]
 gi|251946485|gb|EES86862.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. 3_2_5]
          Length = 614

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 76/228 (33%), Gaps = 20/228 (8%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T E   GQ    + LK  I   K         LF GP G+GKTT A++ A+ +
Sbjct: 8   ARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAY----LFCGPRGVGKTTCARIFAKTI 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL-----YPAMEDFQ 133
                +  G    +     A        ++  +D     S+     L      P      
Sbjct: 64  NCMNLTADGEACNECESCVA-FNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKY 122

Query: 134 LDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
              ++ E             ++++        I ATT    +   +  R  I    N   
Sbjct: 123 KVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQI-YDFNRIS 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           ++D    +   A   G+    EA   IA+++ G  R A  +  +V  F
Sbjct: 182 VDDTVNHLTYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSF 229


>gi|239948372|ref|ZP_04700125.1| DNA polymerase III, subunits gamma and tau [Rickettsia endosymbiont
           of Ixodes scapularis]
 gi|239922648|gb|EER22672.1| DNA polymerase III, subunits gamma and tau [Rickettsia endosymbiont
           of Ixodes scapularis]
          Length = 509

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 81/232 (34%), Gaps = 21/232 (9%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP    E  GQ      L   I   +         L  G  G+GKTT A+++A+ +
Sbjct: 14  ARKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGY----LLTGIRGVGKTTSARIIAKAV 69

Query: 79  GVNFRSTSGPVIAKAGDLAALLT--NLEDRDVLFIDEIHRLS-----IIVEEILYPAMED 131
             +   T    I    +    ++  N    D++ ID   + S      I+E   Y  ++ 
Sbjct: 70  NCSALITENTTIKTCEECTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQG 129

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT V  +   +  R      L  
Sbjct: 130 KHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQ-RYDLRR 188

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
              E++  +++   K   L    EA   IA +S G+ R A  +L +    + 
Sbjct: 189 LSFEEIFKLLEYITKKENLKTDIEALRIIAYKSEGSARDAVSILDQAASMSA 240


>gi|227513703|ref|ZP_03943752.1| DNA polymerase III subunit gamma/tau [Lactobacillus buchneri ATCC
           11577]
 gi|227522507|ref|ZP_03952556.1| DNA polymerase III subunit gamma/tau [Lactobacillus hilgardii ATCC
           8290]
 gi|227083022|gb|EEI18334.1| DNA polymerase III subunit gamma/tau [Lactobacillus buchneri ATCC
           11577]
 gi|227090329|gb|EEI25641.1| DNA polymerase III subunit gamma/tau [Lactobacillus hilgardii ATCC
           8290]
          Length = 630

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 82/229 (35%), Gaps = 23/229 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+  +E  GQ      LK  I       + + H  LF GP G GKT+ A++ A+ +  +
Sbjct: 53  RPQRFDEIVGQSIITQTLKNAI-----LTKQISHAYLFTGPRGTGKTSAAKIFAKAVNCH 107

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDL 136
           +    G    K     A+       DV+ ID      +  +  I +++ Y   +      
Sbjct: 108 YLED-GEPCNKCETCRAINEG-SLSDVIEIDAASNNGVEEIRDIRDKVKYAPTKADYKVY 165

Query: 137 MVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ++ E             ++++   +    I ATT    +   +  R            ED
Sbjct: 166 IIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPATIISRTQ-KFDFKRIRPED 224

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
           +   +    K   +   D+A   IA  + G  R A  +L +   + +  
Sbjct: 225 ILERMAYILKQKNIEYDDKALKLIAKAAEGGMRDALSILDQAMSYGDDK 273


>gi|153872370|ref|ZP_02001285.1| DNA polymerase III [Beggiatoa sp. PS]
 gi|152071164|gb|EDN68715.1| DNA polymerase III [Beggiatoa sp. PS]
          Length = 529

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 51/252 (20%), Positives = 92/252 (36%), Gaps = 31/252 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPR   E  GQ      L   +E        L H  LF G  G+GKTT+A+++A+ L  +
Sbjct: 11  RPRNFPEMVGQAHVLRALTNALE-----NNRLHHAYLFTGTRGVGKTTIARILAKSLNCD 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPA---------ME 130
              T+ P     G  +A     E R  D++ +D   R  +     L             +
Sbjct: 66  TGITAYP----CGQCSACREIDEGRFVDLIEVDAASRTKVEDTRDLLDNVQYAPTRGRYK 121

Query: 131 DFQLDLMVGEGPSA-----RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
            + +D +      +     ++++        + ATT    L   +  R  +   L    +
Sbjct: 122 VYLIDEVHMLSTHSFNALLKTLEEPPPHVKFLLATTDPQKLPPTILSRC-LQFNLKRLPL 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           E +   + +  +   +     A   +A  + G+ R A  LL    D A    A  ++ + 
Sbjct: 181 EQITQHLTKIIEEEDINYELPALRLLAQAADGSLRDALSLL----DQAIAFGAGKLSSDD 236

Query: 246 ADAALLRLAIDK 257
             + L  L  ++
Sbjct: 237 VSSMLGTLDQNR 248


>gi|251790619|ref|YP_003005340.1| DNA polymerase III subunits gamma and tau [Dickeya zeae Ech1591]
 gi|247539240|gb|ACT07861.1| DNA polymerase III, subunits gamma and tau [Dickeya zeae Ech1591]
          Length = 678

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 56/306 (18%), Positives = 103/306 (33%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKTT+A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTTIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGVTATPCGQCDTCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++        + ATT    L   +  R  +   L   + E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSRC-LQFHLKALDAEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  +Q   +   L     A   +A  + G+ R A  L     D A       +T      
Sbjct: 184 RRQLQHVLEQEQLIAEPRALQLLARAADGSLRDALSL----TDQAIAMGQGQVTAAAVSQ 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L       D+  L  +  + +  G G + +   +A      +A+       + +  
Sbjct: 240 MLGTLD------DEQPLALIEALVKGDGAGVMALLGQAAARGVDWEALLVETLTLLHRIA 293

Query: 309 FIQRTP 314
            +Q  P
Sbjct: 294 MLQLLP 299


>gi|190360157|sp|P0C7N7|RFC2_PHANO RecName: Full=Replication factor C subunit 2; Short=Replication
           factor C2
          Length = 411

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 53/262 (20%), Positives = 87/262 (33%), Gaps = 28/262 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+TL E T Q      L   ++++      L H+LF GPPG GKT+    +A+
Sbjct: 34  PWVEKYRPKTLSEVTAQDNTIQILSRTLQSS-----NLPHMLFYGPPGTGKTSTILALAK 88

Query: 77  -------------ELGVNFRSTSGPVIAKAGDLAA-LLTNLEDRDVLFIDEIH---RLSI 119
                        EL  +       V  K  D A   L+     +V+  D+     ++  
Sbjct: 89  QLYGPELMKSRVLELNASDERGISIVRQKVKDFARQQLSVAPTYNVMTEDKDGGEAKMVR 148

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSA----RSVKINLSRFTLIAA-TTRVGLLTNPLQDRF 174
             ++   P  +   LD        A    R      SR T        V  + +PL  R 
Sbjct: 149 YRDKYSCPPFKIIVLDEADSMTQDAQSALRRTMETYSRMTRFCLVCNYVTRIIDPLASRC 208

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
               R    +  +    V   AKL  + +    + E+   + G  R A   L+       
Sbjct: 209 S-KFRFKSLDQGNAVRRVDDIAKLEDVKLDAGVSEELVRVADGDLRKAITFLQSAARLVG 267

Query: 235 VAHAKTITREIADAALLRLAID 256
                   +++       + ID
Sbjct: 268 ATQTAGRKKKVVVDDEDEMDID 289


>gi|167034829|ref|YP_001670060.1| DNA polymerase III subunits gamma and tau [Pseudomonas putida GB-1]
 gi|166861317|gb|ABY99724.1| DNA polymerase III, subunits gamma and tau [Pseudomonas putida
           GB-1]
          Length = 687

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 65/327 (19%), Positives = 95/327 (29%), Gaps = 65/327 (19%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPR+  E  GQ      LK  I A     + L H  LF G  G+GKTT+A+++A+ L   
Sbjct: 11  RPRSFREMVGQAHV---LKALINA--LDNQRLHHAYLFTGTRGVGKTTIARIIAKCLNCE 65

Query: 82  FRSTS------------------------GPVIAKAGDLAALLTNLE------DRDVLFI 111
              TS                             K  D   LL N++         V  I
Sbjct: 66  TGITSTPCGTCSVCREIDEGRFVDLIEIDAASRTKVEDTRELLDNVQYAPSRGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         I ATT    L   + 
Sbjct: 126 DEVHMLSTHSFNALLKTLEE------------------PPPYVKFILATTDPQKLPATIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L     E +   +        +    +A   +   + G+ R A  L     D
Sbjct: 168 SRC-LQFSLKNMSPERVVEHLSHVLSAENVPFEPDALWLLGRAADGSMRDAMSL----TD 222

Query: 232 FAEVAHAKTITREIADAALLRLAIDK-MG-----FDQLDLRYLTMIARNFGGGPVGIETI 285
            A       +      A L  L   +  G      +      L  +      GP     +
Sbjct: 223 QAIAFGEGKVLAADVRAMLGSLDHGQVYGVLQALLEGDARALLEAVRNLAEQGPDWSGVL 282

Query: 286 SAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           +  L+           P  +  G   R
Sbjct: 283 AEMLNVLHRVAIAQALPEAVDNGQGDR 309


>gi|68471103|ref|XP_720328.1| hypothetical protein CaO19.7035 [Candida albicans SC5314]
 gi|77022536|ref|XP_888712.1| hypothetical protein CaO19_7035 [Candida albicans SC5314]
 gi|46442191|gb|EAL01482.1| hypothetical protein CaO19.7035 [Candida albicans SC5314]
 gi|76573525|dbj|BAE44609.1| hypothetical protein [Candida albicans]
 gi|238883252|gb|EEQ46890.1| activator 1 41 kDa subunit [Candida albicans WO-1]
          Length = 363

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 62/208 (29%), Gaps = 31/208 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP++L + + Q      L   I++       L H+LF GPPG GKT+    +A+
Sbjct: 25  PWVEKYRPKSLNDVSSQEHTIKVLTQTIKSG-----NLPHMLFYGPPGTGKTSTILALAK 79

Query: 77  E------LGVNFRSTSGPVIAKAGDLAALLTNLEDRD------------------VLFID 112
           E              +         +   + N                       ++ +D
Sbjct: 80  ELYGPNLYKSRVLELNASDERGISIVREKIKNFARLTISNPTKEDLQNYPCPPYKIIILD 139

Query: 113 EIHRLSIIVEEILYPAMED--FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           E   ++   +  L   ME+       ++      R +    SR +               
Sbjct: 140 EADSMTNDAQSALRRTMENYAGITRFVLICNYITRIIDPITSRCSKFRFKLLNNENAQLR 199

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKL 198
               G    L F    +   ++Q   K+
Sbjct: 200 LKYIGQQENLRFESENNEHQVIQELLKI 227


>gi|302391292|ref|YP_003827112.1| ATP-dependent protease LonB [Acetohalobium arabaticum DSM 5501]
 gi|302203369|gb|ADL12047.1| ATP-dependent protease LonB [Acetohalobium arabaticum DSM 5501]
          Length = 558

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 61/294 (20%), Positives = 91/294 (30%), Gaps = 58/294 (19%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +      RP   EE  GQ +    L    EAA        HV+  GPPG+GKT  A++V 
Sbjct: 54  EPLSEKTRPDDFEEIVGQEDGLKAL----EAALC-GPNPQHVIVYGPPGIGKTAAARLVL 108

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDV--------------------------- 108
                N  S      +K  +L A     ++R +                           
Sbjct: 109 ERAKQNEDSPFNEE-SKFVELDATTARFDERGIADPLIGSVHDPIYQGAGAMGSAGIPQP 167

Query: 109 ------------LFIDEIHRLSIIVEEILYPAMEDFQLDL----MVGEG-----PSARSV 147
                       LFIDEI  L  I    L   +ED ++ L       E            
Sbjct: 168 KPGAVTKAHGGLLFIDEIGELHPIQMNKLLKVLEDRKVFLKSSYYHEEDDNIPQYIHEIF 227

Query: 148 KINLS-RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDE 206
           +  L   F ++ ATTR      P      + +       +D+  I +  A   G A+ D 
Sbjct: 228 QQGLPADFRMVGATTRKPEEIPPAIRSRCLEVYFKPLTPKDIDKIARNAANKAGFAIED- 286

Query: 207 AACEIAMRSRGTPRIAGRLLRRV--RDFAEVAHAKTITREIADAALLRLAIDKM 258
            A E+        R    +++       +E    K IT    +  +     D  
Sbjct: 287 GAVEVIKDYSNNGRDTVNMVQTAGGLVLSEDRKVKKITTADIEWVVNSGKYDPR 340


>gi|301758022|ref|XP_002914857.1| PREDICTED: replication factor C subunit 4-like [Ailuropoda
           melanoleuca]
 gi|281350719|gb|EFB26303.1| hypothetical protein PANDA_002794 [Ailuropoda melanoleuca]
          Length = 363

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 76/234 (32%), Gaps = 45/234 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+ ++E   Q E  + LK  +E A      L ++LF GPPG GKT+     AR
Sbjct: 38  PWVEKYRPKCVDEIAFQEEVVAVLKKSLEGAD-----LPNLLFYGPPGTGKTSTILAAAR 92

Query: 77  -------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD--------VLFIDEIH 115
                        EL  +       V  K  + A L  +    D        ++ +DE  
Sbjct: 93  ELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEAD 152

Query: 116 RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
            ++   +  L   ME                     +RF        V  +  PL  R  
Sbjct: 153 SMTSAAQAALRRTMEKESKT----------------TRF--CLICNYVSRIIEPLTSRCS 194

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
              R      +  +  +   A    + +++E    +   S G  R A   L+  
Sbjct: 195 -KFRFKPLSDKIQQQRLLDIADKEHVKISNEGIAYLVKVSEGDLRKAITFLQSA 247


>gi|254514492|ref|ZP_05126553.1| DNA polymerase III, tau and gamma subunit [gamma proteobacterium
           NOR5-3]
 gi|219676735|gb|EED33100.1| DNA polymerase III, tau and gamma subunit [gamma proteobacterium
           NOR5-3]
          Length = 557

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 52/262 (19%), Positives = 93/262 (35%), Gaps = 35/262 (13%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP T +   GQ      L+  +++ +     L H  LF G  G+GKTT+A+++AR L   
Sbjct: 11  RPATFDALVGQEHVLQALRHALDSNR-----LHHAYLFTGTRGVGKTTIARILARCLNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYP-----AMEDFQL 134
              ++ P     G+  + L   E R  D++ +D   R  +     L              
Sbjct: 66  KGVSASP----CGECGSCLEITEGRSVDLIEVDAASRTKVEDTRELLDNVQYAPTRSRYK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             ++ E             ++++   +    + ATT    L   +  R  +   L     
Sbjct: 122 VYLIDEVHMLSGHSFNALLKTLEEPPAHVKFLLATTDPQKLPATVLSRC-LQFNLKNMSA 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF-------AEVAHA 238
           E +   ++       +   + A  ++   + G+ R A  L  +   F       AEVA  
Sbjct: 181 ERVVEHLRDILAQEKVDFDEPALWQLGRAAAGSMRDALSLTDQAIAFGDGALRDAEVASM 240

Query: 239 -KTITREIADAALLRLAIDKMG 259
             ++ R      L  L  D  G
Sbjct: 241 LGSVDRRHVHELLEALLADDAG 262


>gi|195953707|ref|YP_002121997.1| DNA polymerase III, subunits gamma and tau [Hydrogenobaculum sp.
           Y04AAS1]
 gi|195933319|gb|ACG58019.1| DNA polymerase III, subunits gamma and tau [Hydrogenobaculum sp.
           Y04AAS1]
          Length = 421

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 53/298 (17%), Positives = 93/298 (31%), Gaps = 64/298 (21%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+T +E  GQ    + LK     A    +     +F G  G GKTT A++ A+ L
Sbjct: 7   ARKYRPKTFKELIGQEIPATILK----NAFLYQKIHHAYIFAGHKGTGKTTTARIFAKVL 62

Query: 79  GV------------------------NFRSTSGPVIAKAGDLAALLTNL------EDRDV 108
                                     +             ++ A+              V
Sbjct: 63  NCLNPQEGEPCNACPNCQAIEKGTFVDLIEMDAASNRGIDEIRAVREGASYLPMQGKYKV 122

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
             IDE H L+      L   +E+                         I  TT    +  
Sbjct: 123 YIIDEAHMLTKEAFNALLKTIEE------------------PPPSLIFILCTTEFDKILP 164

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            +Q R    +       E++KT ++R A    + + +EA   ++  +  + R A  LL  
Sbjct: 165 TIQSRCQKLVFSRA-SKENIKTYLRRIANQENIEIDEEALDVLSDLADDSMRDAASLL-- 221

Query: 229 VRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV-GIETI 285
             D A       +T +I  +      +DK        ++L ++  +     +  + TI
Sbjct: 222 --DQASTYGNNKVTIDIVKSMF--GPVDKASI----RKFLELLIESDTKEAINMLNTI 271


>gi|291043744|ref|ZP_06569460.1| DNA polymerase III gamma and tau [Neisseria gonorrhoeae DGI2]
 gi|291012207|gb|EFE04196.1| DNA polymerase III gamma and tau [Neisseria gonorrhoeae DGI2]
          Length = 736

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 49/303 (16%), Positives = 89/303 (29%), Gaps = 63/303 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T  +  GQ      L+  ++  +     L H  L  G  G+GKTT+A+++A+ L   
Sbjct: 40  RPKTFSDLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCE 94

Query: 82  FRS------------------------TSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                                ++  +L N +         V  I
Sbjct: 95  NAQHGELCGVCQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYII 154

Query: 112 DEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+H LS      +   +E+    +  ++      +     LSR                
Sbjct: 155 DEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNM------- 207

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
                           + +   +        +A    A   +   + G+ R A  LL + 
Sbjct: 208 --------------TAQQVADHLAHVLDSEKIAYDPPALQLLGRAAAGSMRDALSLLDQA 253

Query: 230 RDFAEVAHAKTITREIADAALLRLAIDKM-GFDQLDLRYLTMIARNFGGGPVGIETISAG 288
                   A+   R++  A   +   + + G    D   L   A+      VG +     
Sbjct: 254 IALGSGKVAENDVRQMIGAVDKQYLYELLTGIVNQDGEALLAKAQEMAACAVGFDN---A 310

Query: 289 LSE 291
           L E
Sbjct: 311 LGE 313


>gi|304316100|ref|YP_003851245.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777602|gb|ADL68161.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 506

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 58/261 (22%), Positives = 91/261 (34%), Gaps = 25/261 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAA-------KARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  E    LK+ I+         +  A+    +LF GPPG GKT LA  +A E 
Sbjct: 78  TFRDVAGLDEVIDELKIIIDFINNTEKYDRMGAKIPKGILFYGPPGTGKTLLATALAGET 137

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
              F S SG           A  + AL    +     ++FIDEI  +          + +
Sbjct: 138 NSTFISASGSEFVEKYVGVGASRIRALFARAKKSTPSIIFIDEIDAVGSKRNND-NNSEK 196

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
           D  L+ ++ E     S         +I AT R+ +L   L    RF   I +    ++  
Sbjct: 197 DQTLNQLLVEMDGFNSNDG----IIVIGATNRLDMLDEALLRPGRFDRTIHIGNPNVKAR 252

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             I++   +   L                T      +       A + H + I RE  D 
Sbjct: 253 LEILKVHTRNKPLDNDISLEELAKKTHGMTGAHLSSICNEAAILAVIRHKQRIGREEFDE 312

Query: 249 ALLRLAIDKMGFDQLDLRYLT 269
           A+ R+     G  + +   L 
Sbjct: 313 AIERVVA---GLQKKNPEVLE 330


>gi|194222681|ref|XP_001498117.2| PREDICTED: similar to Replication factor C subunit 4 (Replication
           factor C 37 kDa subunit) (RF-C 37 kDa subunit) (RFC37)
           (Activator 1 37 kDa subunit) (A1 37 kDa subunit) [Equus
           caballus]
          Length = 364

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 76/234 (32%), Gaps = 45/234 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+ ++E   Q E  + LK  +E A      L ++LF GPPG GKT+     AR
Sbjct: 39  PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGAD-----LPNLLFYGPPGTGKTSTILAAAR 93

Query: 77  -------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD--------VLFIDEIH 115
                        EL  +       V  K  + A L  +    D        ++ +DE  
Sbjct: 94  ELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEAD 153

Query: 116 RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
            ++   +  L   ME                     +RF        +  +  PL  R  
Sbjct: 154 SMTSAAQAALRRTMEKESKT----------------TRF--CLICNYISRIIEPLTSRCS 195

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
              R      +  +  +   A    + +++E    +   S G  R A   L+  
Sbjct: 196 -KFRFKPLSDKIQQQRLLDIAGKEHVKISNEGIAYLVKVSEGDLRKAITFLQSA 248


>gi|190573045|ref|YP_001970890.1| DNA polymerase III subunits gamma and tau [Stenotrophomonas
           maltophilia K279a]
 gi|190010967|emb|CAQ44576.1| putative DNA polymerase III subunit Tau [Stenotrophomonas
           maltophilia K279a]
          Length = 677

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 42/241 (17%), Positives = 74/241 (30%), Gaps = 53/241 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN- 81
           RP+   E  GQ      L   +++ +         LF G  G+GKTT+A++ A+ L    
Sbjct: 11  RPKRFAELVGQEHVVRALSNALDSGRVHHA----FLFTGTRGVGKTTIARIFAKSLNCEQ 66

Query: 82  -----------------------FRSTSGPVIAKAGDLAALLTNLE------DRDVLFID 112
                                               D+  ++ N +         V  ID
Sbjct: 67  GTSADPCGQCAACLDIDAGRYIDLLEIDAASNTGVDDVREVIENAQYMPSRGKYKVYLID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS      L   +E+                         + ATT    L   +  
Sbjct: 127 EVHMLSKAAFNALLKTLEE------------------PPEHVKFLLATTDPQKLPVTVLS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R  +   L   + + ++  + R      +     A  ++A  + G+ R    LL +   +
Sbjct: 169 RC-LQFNLKRLDEDQIQGQMTRILAAEEIEADGSAIVQLAKAADGSLRDGLSLLDQAIAY 227

Query: 233 A 233
           A
Sbjct: 228 A 228


>gi|289450158|ref|YP_003475319.1| DNA polymerase III subunit gamma and tau [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
 gi|289184705|gb|ADC91130.1| DNA polymerase III, subunit gamma and tau [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
          Length = 612

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 86/226 (38%), Gaps = 23/226 (10%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVAREL 78
            + RPRT  E  GQ    + L+  I     R + + H  LF G  G GKT+LA++ AR +
Sbjct: 8   RIYRPRTFAEVVGQKHVITALQQAI-----RQDRIAHAYLFCGTRGTGKTSLAKIFARAI 62

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQ 133
                  + P  A      +L  +L   D++ +D      +  +  I +E+ +       
Sbjct: 63  NCPNGHDAEPCNACPICRGSLDGSL--LDIIEMDAASNNSVDNIRRICDEVAFAPTTCKY 120

Query: 134 LDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
              ++ E             ++++        I ATT    +   +  R      L    
Sbjct: 121 KVYIIDEVHMLSVGAFNALLKTLEEPPEHIVFILATTDPQRIPATILSRCQ-RYDLRALS 179

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
           + ++ + ++  A    +   D A   +A  ++G  R A  LL + R
Sbjct: 180 LTEIASRLRLIATENDIKADDSAIEALAGLAKGAMRDAISLLDQCR 225


>gi|255690089|ref|ZP_05413764.1| DNA polymerase III, gamma and tau subunit [Bacteroides finegoldii
           DSM 17565]
 gi|260624368|gb|EEX47239.1| DNA polymerase III, gamma and tau subunit [Bacteroides finegoldii
           DSM 17565]
          Length = 618

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 74/245 (30%), Gaps = 54/245 (22%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T E   GQ    + LK  I   K         LF GP G+GKTT A++ A+ +
Sbjct: 8   ARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAY----LFCGPRGVGKTTCARIFAKTI 63

Query: 79  GV-------------------------NFRSTSGPVIAKAGDLAALLT------NLEDRD 107
                                      N             D+  L+        +    
Sbjct: 64  NCITPTADGEACNQCESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYK 123

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           V  IDE+H LS          +E+                         I ATT    + 
Sbjct: 124 VYIIDEVHMLSASAFNAFLKTLEE------------------PPRHAIFILATTEKHKIL 165

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             +  R  I    N   +ED    +   A   G+    EA   IAM++ G  R A  +  
Sbjct: 166 PTILSRCQI-YDFNRISVEDTVNHLSYVASKEGITAEPEALNVIAMKADGGMRDALSIFD 224

Query: 228 RVRDF 232
           +V  F
Sbjct: 225 QVISF 229


>gi|16082630|ref|NP_394950.1| replication factor C small subunit [Thermoplasma acidophilum DSM
           1728]
 gi|73920752|sp|Q9HI47|RFCS_THEAC RecName: Full=Replication factor C small subunit; Short=RFC small
           subunit; AltName: Full=Clamp loader small subunit
          Length = 318

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 60/291 (20%), Positives = 105/291 (36%), Gaps = 42/291 (14%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +      RP++L E  G+ E    LK F+E      + + H+LF G  G GKT+ A  +A
Sbjct: 3   EIWTEKYRPKSLSEIYGEDENIQKLKSFVE-----KKEIPHLLFAGSVGTGKTSTAIALA 57

Query: 76  RE-----LGVNFRSTSGP-------VIAKAGDLAALL-TNLEDRDVLFIDEIHRLSIIVE 122
            E        N    +         +  K  D+A +  +N     +LF+DE  +L+   +
Sbjct: 58  IELFGDSWKENMVEMNASNENGIDVIRNKIKDIARIKPSNPLGFKILFLDEADQLTAEAQ 117

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             L   ME +                   +RF    +      +  P+Q R  + +R   
Sbjct: 118 AALRRTMEIYSET----------------TRFIF--SCNYSSKIIPPIQSR-TVVMRFRP 158

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK--- 239
              E +   +Q  AK  G  + +E+   +   S G  R A  +L+ V    E++  K   
Sbjct: 159 VPDEYISRKLQEIAKNEGFQIDEESMHALVEVSAGDMRKAINVLQAVYTSGEISPKKIYE 218

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
            I     +     ++    G        +  +      G  GI+ + +  S
Sbjct: 219 IIGYASPEKIQKMISRAINGLFDEAREIVDGML--IYDGLSGIDIVRSLHS 267


>gi|94986234|ref|YP_605598.1| DNA polymerase III, subunits gamma and tau [Deinococcus
           geothermalis DSM 11300]
 gi|94556515|gb|ABF46429.1| DNA polymerase III, subunits gamma and tau [Deinococcus
           geothermalis DSM 11300]
          Length = 737

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 50/266 (18%), Positives = 81/266 (30%), Gaps = 48/266 (18%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV-- 80
           RP   ++  GQ      LK  +E  +         LF GP G+GKTT A+++A       
Sbjct: 9   RPINWDQVVGQEHVKDVLKAALEQGRVGHAY----LFSGPRGVGKTTTARLIAMTANCTG 64

Query: 81  ------------------------NFRSTSGPVIAKAGDLAA---LLTNLEDRDVLFIDE 113
                                      + S   +    DL     L      + +  +DE
Sbjct: 65  PSPKPCGECESCLAVRNGSHPDVLEIDAASNNSVDDVRDLREKVGLAAMRGGKKIYILDE 124

Query: 114 IHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAAT----TRVGLLT 167
            H +S      L   +E+    +  ++      + +   LSR             +    
Sbjct: 125 AHMMSRAAFNALLKTLEEPPAHVIFILATTEPEKIIPTILSRCQHYRFRRLTPEEIAGKL 184

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTI--VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
             L +R G+       E E L  I  +  GA   G ++ +         +R +   A  L
Sbjct: 185 ADLAEREGVRA-----EPEALNLIGRLADGAMRDGESLLERMLAAGTAVTRVSVEEALGL 239

Query: 226 --LRRVRDFAEVAHAKTITREIADAA 249
               RVR  A           +  AA
Sbjct: 240 PPSERVRGIAAALVQGDAGMALTGAA 265


>gi|67923223|ref|ZP_00516710.1| DNA-directed DNA polymerase [Crocosphaera watsonii WH 8501]
 gi|67854954|gb|EAM50226.1| DNA-directed DNA polymerase [Crocosphaera watsonii WH 8501]
          Length = 687

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 79/225 (35%), Gaps = 19/225 (8%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +S  +      RP+T  +  GQ    + L   I + +         LF GP G GKT+ A
Sbjct: 1   MSSYEPLHHKYRPQTFADLVGQEAIATTLNNAIASQRIA----PAYLFTGPRGTGKTSSA 56

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILY 126
           +++A+ L                ++   +      DV+ ID      +  +  I+E   +
Sbjct: 57  RILAKSLNCLAVEAPTASPCGECEVCRAIARGSALDVIEIDAASNTGVDNIREIIERSQF 116

Query: 127 PAMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             ++      ++ E             ++++    R   + ATT    +   +  R    
Sbjct: 117 APVQCRYKVYVIDECHMLSVAAFNALLKTLEEPPERVIFVLATTDPQRVLPTIISRCQ-R 175

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
                  +E + + +   A+   + +  EA   +A  + G  R A
Sbjct: 176 FDYRRIPLEAMVSHLTVIAQKENIEIEPEALTLVAQIANGGLRDA 220


>gi|308171911|ref|YP_003918616.1| DNA polymerase III subunits gamma and tau [Bacillus
           amyloliquefaciens DSM 7]
 gi|307604775|emb|CBI41146.1| DNA polymerase III (gamma and tau subunits) [Bacillus
           amyloliquefaciens DSM 7]
 gi|328551720|gb|AEB22212.1| DNA polymerase III subunits gamma and tau [Bacillus
           amyloliquefaciens TA208]
          Length = 563

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 83/233 (35%), Gaps = 25/233 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RP+  E+  GQ      L    + A  + +     LF GP G GKT+ A++ A+
Sbjct: 5   ALYRVFRPQQFEDVVGQEHITKTL----QNALLQKKFSHAYLFSGPRGTGKTSAAKIFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAAL--LTNLEDRDVLFID-----EIHRLSIIVEEILYPAM 129
            +         PV     + AA   +TN    DV+ ID      +  +  I +++ +   
Sbjct: 61  AVNCEH----APVEEPCNECAACKGITNGSISDVIEIDAASNNGVDEIRDIRDKVKFAPS 116

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                  ++ E             ++++   +    I ATT    +   +  R       
Sbjct: 117 AVTYKVYIIDEVHMLSIGAFNALLKTLEEPPAHCIFILATTEPHKIPLTIISRCQ-RFDF 175

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                + +   ++       L V + A   IA  + G  R A  LL +   F+
Sbjct: 176 KRITSQAIVGRMKIIVDAEQLKVEEGALDIIASAADGGMRDALSLLDQAVSFS 228


>gi|53714518|ref|YP_100510.1| DNA polymerase III subunit gamma/tau [Bacteroides fragilis YCH46]
 gi|52217383|dbj|BAD49976.1| DNA polymerase III subunit gamma/tau [Bacteroides fragilis YCH46]
          Length = 614

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 76/228 (33%), Gaps = 20/228 (8%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T E   GQ    + LK  I   K         LF GP G+GKTT A++ A+ +
Sbjct: 8   ARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAY----LFCGPRGVGKTTCARIFAKTI 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL-----YPAMEDFQ 133
                +  G    +     A        ++  +D     S+     L      P      
Sbjct: 64  NCMNLTADGEACNECESCVA-FNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKY 122

Query: 134 LDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
              ++ E             ++++        I ATT    +   +  R  I    N   
Sbjct: 123 KVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQI-YDFNRIS 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           ++D    +   A   G+    EA   IA+++ G  R A  +  +V  F
Sbjct: 182 VDDTVNHLTYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSF 229


>gi|167957235|ref|ZP_02544309.1| putative DNA polymerase III, gamma/tau subunits [candidate division
           TM7 single-cell isolate TM7c]
          Length = 489

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 86/257 (33%), Gaps = 41/257 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     R ++L E  GQ    S L   +E+ K         L  GP G GKT++A+++A 
Sbjct: 4   ALYRKYRSKSLSEIVGQDHVTSLLDRALESNKVAHAY----LLTGPRGTGKTSVARILAH 59

Query: 77  ----------ELGVNFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSII 120
                     +  ++             ++  L            + V  IDE+H LS  
Sbjct: 60  KITGLPYDIEDNNLDIIEIDAASNNGVDNVRDLREKALVAPIKSQKKVYIIDEVHMLSKS 119

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
               L   +E+                         I ATT    + + +  R       
Sbjct: 120 AFNALLKIIEE------------------PPEHVVFILATTDFDKVPDTIVSRTQ-RYNF 160

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
              +   +   +   AK   + +  +A   IA R  G+ R +  LL +++     +    
Sbjct: 161 RLIDESTVADHLAFIAKEESIKIDTDALNLIAERGGGSLRDSISLLDQIQH--TESKNGE 218

Query: 241 ITREIADAALLRLAIDK 257
           ITR   +A+L     D+
Sbjct: 219 ITRSDVEASLGLATKDE 235


>gi|291320674|ref|YP_003515939.1| DNA polymerase III subunit gamma and tau [Mycoplasma agalactiae]
 gi|290753010|emb|CBH40986.1| DNA polymerase III subunit gamma and TAU [Mycoplasma agalactiae]
          Length = 614

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 52/292 (17%), Positives = 84/292 (28%), Gaps = 66/292 (22%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     RP+  ++  GQ      LK  I     R   + H  LF GP G+GKT++A++ A
Sbjct: 5   ALYRKYRPKCFDDVKGQDYIIQTLKNII-----RNRKISHAYLFCGPRGVGKTSVARIFA 59

Query: 76  RELGVNFR----------------------STSGPVIAKAGDLAALLTN------LEDRD 107
             +                                       +  L           +  
Sbjct: 60  NLINCYHNNDDYSKLCQICEENGSNTIDIIEMDAASNNGVDSIRELRDKIQHLPSAGNYK 119

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           +  IDE+H LS      L   +E+          P A  +         I ATT    + 
Sbjct: 120 IYIIDEVHMLSKGAFNALLKTLEE----------PPAHVI--------FIFATTDPQKIP 161

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             +  R            + L   ++   +   +    EA   IA  + G+ R A  ++ 
Sbjct: 162 LTILSRVQ-RFNFRRMSNDTLVKQIKSILEQEDIKYDAEALPYIARLAVGSMRDALSII- 219

Query: 228 RVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGP 279
              D A       I       +         G    D   + +I   + G P
Sbjct: 220 ---DQANAYGNGYIKFSDVMYSF--------GITSND-NLIKIINSLYNGKP 259


>gi|169831633|ref|YP_001717615.1| peptidase S16, lon domain-containing protein [Candidatus
           Desulforudis audaxviator MP104C]
 gi|169638477|gb|ACA59983.1| peptidase S16, lon domain protein [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 563

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 48/235 (20%), Positives = 77/235 (32%), Gaps = 55/235 (23%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           R++S  +      RP    E  GQ E    L+     A        HV+  GPPG+GKT 
Sbjct: 56  RSISLTEPLAERTRPTCFSEIVGQEEGLKALR-----AALCGPNPQHVIIYGPPGIGKTA 110

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR----------------------- 106
            A++V  E   N +S  G   A+  ++ A     ++R                       
Sbjct: 111 AARLVLEEARKNPQSPFGEE-ARFIEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGM 169

Query: 107 ----------------DVLFIDEIHRLSIIVEEILYPAMEDFQLDL----MVGEGPSARS 146
                            +LFIDEI  L  +    L   +ED ++ L       +      
Sbjct: 170 AGVPQPKPGAVTRAHGGILFIDEIGELHPVQMNKLLKVLEDRKVFLESSYYNPDDTQVPQ 229

Query: 147 VKINL------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
              ++      + F L+ ATTR+    +P      + I       + +  I    
Sbjct: 230 HIHDIFQNGLPADFRLVGATTRMPENISPALRSRCLEIFFRPLVPDQVGRIAANA 284


>gi|328883870|emb|CCA57109.1| DNA polymerase III subunits gamma and tau [Streptomyces venezuelae
           ATCC 10712]
          Length = 795

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 59/175 (33%), Gaps = 26/175 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP +  E  GQ      L+  +   +         LF GP G GKTT A+++AR
Sbjct: 80  ALYRRYRPESFAEVIGQEHVTDPLQQALRNNRVNHAY----LFSGPRGCGKTTSARILAR 135

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR----DVLFIDEIHRLSII------VEEILY 126
            L        GP     G+  +      +     DV+ ID      +        +    
Sbjct: 136 CLNCE----QGPTPTPCGECQSCRDLARNGPGSIDVIEIDAASHGGVDDARDLREKAFFG 191

Query: 127 PAMEDFQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           PA   +++ ++         G     + V+        I ATT    +   ++ R
Sbjct: 192 PASSRYKIYIIDEAHMVTSAGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSR 246


>gi|327292807|ref|XP_003231101.1| DNA replication factor C subunit Rfc2 [Trichophyton rubrum CBS
           118892]
 gi|326466731|gb|EGD92184.1| DNA replication factor C subunit Rfc2 [Trichophyton rubrum CBS
           118892]
          Length = 386

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 49/269 (18%), Positives = 86/269 (31%), Gaps = 52/269 (19%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
            +  Q    +   RP+TL++ T Q    S L+  + A+      L H+LF G PG GKT+
Sbjct: 27  ESDQQAQPWVEKYRPKTLDDVTAQDHTISILQRNLNAS-----NLPHMLFYGSPGTGKTS 81

Query: 70  LAQVVAR-------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD--------- 107
               +++             EL  +       V  K  D A +  +    D         
Sbjct: 82  TILAMSKSLFGPALVRSRVLELNASDERGINIVREKIKDFARMHLSQPPADPVYRSQYPC 141

Query: 108 ----VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA-TTR 162
               ++ +DE   ++   +  L   ME +                   SR T        
Sbjct: 142 PPFKIIILDEADSMTHDAQSALRRTMEKY-------------------SRITRFCLVCNY 182

Query: 163 VGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
           V  + +P+  R     R    +    ++ +   A++  L + D     +   S G  R A
Sbjct: 183 VTRIIDPVASRCS-KFRFKVLDGSAAQSRLVEIARMEKLDLEDNVVETLLRCSDGDLRKA 241

Query: 223 GRLLRRVRDFAEVAHAKTITREIADAALL 251
              ++     A     K       +  L 
Sbjct: 242 ITFMQSSARLARYGSGKKKDSSDKEMELD 270


>gi|168485812|ref|ZP_02710320.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae
           CDC1087-00]
 gi|183570972|gb|EDT91500.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae
           CDC1087-00]
          Length = 551

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 53/296 (17%), Positives = 90/296 (30%), Gaps = 58/296 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     R +   +  GQ      LK  +E      E + H  LF GP G GKT++A++ A
Sbjct: 4   ALYRKYRSQNFSQLVGQEVVAKTLKQAVE-----QEKISHAYLFSGPRGTGKTSVAKIFA 58

Query: 76  RELGVNFRS------------------------TSGPVIAKAGDLAALLTN------LED 105
           + +    +                                   ++  +         L  
Sbjct: 59  KAINCPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLAR 118

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
             V  IDE+H LS      L   +E+                         I ATT +  
Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPT------------------QNVVFILATTELHK 160

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           +   +  R       +    + +K  +    +   ++   EA   IA R+ G  R A  +
Sbjct: 161 IPATILSRVQRFEFKSIKTQD-IKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSI 219

Query: 226 LRRVRDFAEVAHAKTITREIADAALLRLAIDKM--GFDQLDL-RYLTMIARNFGGG 278
           L +     +     T   E     +   A+D       Q D+ + L+ +   F  G
Sbjct: 220 LDQALSLTQGNELTTAISEEITGTISLSALDDYVAALSQQDVPKALSCLNLLFDNG 275


>gi|117925035|ref|YP_865652.1| DNA polymerase III subunits gamma/tau [Magnetococcus sp. MC-1]
 gi|117608791|gb|ABK44246.1| DNA polymerase III, gamma subunit [Magnetococcus sp. MC-1]
          Length = 605

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 78/234 (33%), Gaps = 25/234 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPR  E+  GQ      L+  +E    +       LF G  G+GKTTL++++A  + +N 
Sbjct: 15  RPRRFEDLIGQEHTVQALRHALE----QGRIPHAFLFTGIRGIGKTTLSRLLA--MCLNC 68

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME-----DFQLDLM 137
            +        A D    +   E  DV  +D   R  +     L   +            +
Sbjct: 69  GTGVTANPCGACDSCRAIVRGEHPDVFEVDAASRTKVEQMRELLDGVAYTPSLSRYKIYI 128

Query: 138 VGEGPS--ARSVKINLS-------RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E     A S    L            I ATT V  +   +  R      L   + + L
Sbjct: 129 LDEVHMLSASSFNALLKTLEEPPTHVKFIFATTEVRKILPTILSRCQ-RYDLRRLDRDGL 187

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
              +     +  +A   E    I+  + G+ R A  LL    D A       + 
Sbjct: 188 ARYLAHVLDVEQIAYDQEGLAAISHAADGSVRDALSLL----DQAIAHGGGRVD 237


>gi|255010713|ref|ZP_05282839.1| DNA polymerase III subunit gamma/tau [Bacteroides fragilis 3_1_12]
 gi|313148519|ref|ZP_07810712.1| DNA polymerase III subunit gamma/tau [Bacteroides fragilis 3_1_12]
 gi|313137286|gb|EFR54646.1| DNA polymerase III subunit gamma/tau [Bacteroides fragilis 3_1_12]
          Length = 614

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 76/228 (33%), Gaps = 20/228 (8%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T E   GQ    + LK  I   K         LF GP G+GKTT A++ A+ +
Sbjct: 8   ARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAY----LFCGPRGVGKTTCARIFAKTI 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL-----YPAMEDFQ 133
                +  G    +     A        ++  +D     S+     L      P      
Sbjct: 64  NCMNLTADGEACNECESCVA-FNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKY 122

Query: 134 LDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
              ++ E             ++++        I ATT    +   +  R  I    N   
Sbjct: 123 KVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQI-YDFNRIS 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           ++D    +   A   G+    EA   IA+++ G  R A  +  +V  F
Sbjct: 182 VDDTVNHLSYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSF 229


>gi|147669204|ref|YP_001214022.1| DNA polymerase III, subunits gamma and tau [Dehalococcoides sp.
           BAV1]
 gi|146270152|gb|ABQ17144.1| DNA polymerase III, subunits gamma and tau [Dehalococcoides sp.
           BAV1]
          Length = 570

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 50/292 (17%), Positives = 90/292 (30%), Gaps = 51/292 (17%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+TL +  GQ      LK  + + +         LF GP G GKT+  +++A+ +    
Sbjct: 14  RPQTLADLVGQEHVAHTLKNALSSGRIAQAY----LFCGPRGTGKTSTGRILAKAVNCTT 69

Query: 83  RS-------------------------TSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                                D+  L   ++      +  V  I
Sbjct: 70  NQGKGEPCNTCPMCLSITEGSSMDIIEIDAASNTGVDDIRELKEKVQYSPSLANYKVYII 129

Query: 112 DEIHRLSIIVEEILYPAMED--FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+H LS      L   +E+   ++  ++      + +   +SR           +    
Sbjct: 130 DEVHMLSNSASNALLKTLEEPPPRVIFILATTEIHKVLPTIMSRCQRFDFHRVSLVDMTR 189

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAK--------LTGLAVTDEAACEIAMRSRGTPRI 221
              +  +   +N  E E LK I  R A         L     T   A     + +    I
Sbjct: 190 KLGKISLAEGINV-EPEALKLIA-RSAGGSFRDGENLLQQIATTYGAEISLSQVQAALGI 247

Query: 222 AGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIAR 273
           +G    R++  AE  +      +     L  +  D +   Q     L  + +
Sbjct: 248 SGD--ERIKALAE--NILKKDIKNGLKTLNAVLADGLDLKQFRRELLDYLRQ 295


>gi|242398095|ref|YP_002993519.1| Replication factor C large subunit [Thermococcus sibiricus MM 739]
 gi|242264488|gb|ACS89170.1| Replication factor C large subunit [Thermococcus sibiricus MM 739]
          Length = 487

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 74/221 (33%), Gaps = 28/221 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                 RP+ L +   Q +A   +K +IE           +L  GPPG GKTT    +A 
Sbjct: 3   PWTEKYRPKRLVDIVNQDKALEKIKPWIEEWLHGIPKKKALLLAGPPGSGKTTTVYALAN 62

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAM 129
           E        +       G +   L            R ++F+DE+  +            
Sbjct: 63  EYKFEVIELNASDDRTFGKIERYLNAAYTMDVFGRRRKLIFLDEVDNIEPS-------GA 115

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           ++    +   + P   S               R   +   ++++  I       + + LK
Sbjct: 116 KEIAKLIGKAQNPIMMSA-------------NRYWEVPIEIRNKAEIVQYKRLSQRDILK 162

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
            +  R  K  G+ V  E    IA R+RG  R A   L+ V 
Sbjct: 163 ALF-RITKAEGIFVPKEVLQMIAQRARGDLRAAINDLQTVV 202


>gi|154322657|ref|XP_001560643.1| conserved hypothetical protein [Botryotinia fuckeliana B05.10]
 gi|150848005|gb|EDN23198.1| conserved hypothetical protein [Botryotinia fuckeliana B05.10]
          Length = 355

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 46/242 (19%), Positives = 80/242 (33%), Gaps = 39/242 (16%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   +   RP  L++  G  E    LK+      A+   + HV+  G PG+GKTT    +
Sbjct: 32  ELPWVEKYRPVFLDDVVGNTETIERLKII-----AKDGNMPHVIISGMPGIGKTTSVLCL 86

Query: 75  AR------------ELGVNFRSTSGPVIAKAGDLA--ALLTNLEDRDVLFIDEIHRLSII 120
           AR            EL  +       V  +    A   +        ++ +DE   ++  
Sbjct: 87  ARQLLGDSYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPAGRHKLVILDEADSMTSG 146

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            ++ L   ME +                   +RF    A  +   +  PLQ R  I    
Sbjct: 147 AQQALRRTMEIYSST----------------TRFAF--ACNQSNKIIEPLQSRCAILRYA 188

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA-GRLLRRVRDFAEVAHAK 239
              + + +K ++Q   +   +  +D+    +   + G  R A   L      F  V    
Sbjct: 189 RLTDQQVVKRLLQ-IIETEKVEYSDDGLAALVFSAEGDMRQAINNLQSTFAGFGLVNGDN 247

Query: 240 TI 241
             
Sbjct: 248 VF 249


>gi|326389783|ref|ZP_08211348.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter ethanolicus
           JW 200]
 gi|325994265|gb|EGD52692.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 510

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 57/244 (23%), Positives = 89/244 (36%), Gaps = 22/244 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAA-------KARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  E    LKV I+         K  A+    +LF GPPG GKT LA  +A E 
Sbjct: 82  TFKDVAGLDEVIDELKVIIDFMTNTEKYNKMGAKIPKGILFYGPPGTGKTLLATALAGET 141

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAME 130
              F S SG           A  + AL    +     ++FIDEI  +          + +
Sbjct: 142 NSTFISASGSEFVEKYVGVGASRIRALFAKAKKSAPSIIFIDEIDAVGTKRNTD-NNSEK 200

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
           D  L+ ++ E     S +       +I AT R+ +L   L    RF   I +    ++  
Sbjct: 201 DQTLNQLLVEMDGFNSNEG----IIVIGATNRIDMLDEALLRPGRFDRTIHIGAPNMKAR 256

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             I++   +   L  T   +         T      +       A + +   I +E  + 
Sbjct: 257 LEILKVHTRNKPLDETVSLSELARKTHGMTGAHLATMCNEAAILAVMKNKSKIGKEEFEE 316

Query: 249 ALLR 252
           AL R
Sbjct: 317 ALER 320


>gi|182418736|ref|ZP_02950009.1| DNA polymerase III subunit gamma/tau [Clostridium butyricum 5521]
 gi|237669676|ref|ZP_04529653.1| DNA polymerase III subunit gamma/tau [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|182377430|gb|EDT74986.1| DNA polymerase III subunit gamma/tau [Clostridium butyricum 5521]
 gi|237654750|gb|EEP52313.1| DNA polymerase III subunit gamma/tau [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 555

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 81/227 (35%), Gaps = 23/227 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T ++  GQ    + LK      +   + + H  LF G  G GKT+ A+V+A+ L   
Sbjct: 11  RPKTFDDVVGQEHITTTLK-----NEIINDRIAHAYLFCGTRGTGKTSTAKVMAKALNC- 64

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHR-----LSIIVEEILYPAMEDFQLDL 136
               +G    +      +   L   DV  +D         +  I+++  YP  E      
Sbjct: 65  LNLENGEPCNECEMCKKINEGLAI-DVTELDAASNNGIDKIRDIIDDTKYPPQEAKYKVY 123

Query: 137 MVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ++ E             ++++        I ATT    L   +  R            ++
Sbjct: 124 IMDEVHMLSVGAVNAFLKTLEEPPKNVIFILATTDPQKLPITILSRCQ-RFDFKRINHKE 182

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
           +   ++R  +   +   D++   IA    G  R A  +L +     E
Sbjct: 183 VSARLRRITEAQNIDCEDKSLDLIARVCDGAMRDALSILDQAIAMGE 229


>gi|315042534|ref|XP_003170643.1| replication factor C subunit 2 [Arthroderma gypseum CBS 118893]
 gi|311344432|gb|EFR03635.1| replication factor C subunit 2 [Arthroderma gypseum CBS 118893]
          Length = 386

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 49/266 (18%), Positives = 84/266 (31%), Gaps = 52/266 (19%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
            Q    +   RP+TL++ T Q    S L+  + A+      L H+LF G PG GKT+   
Sbjct: 30  QQAQPWVEKYRPKTLDDVTAQDHTISVLQRNLHAS-----NLPHMLFYGSPGTGKTSTIL 84

Query: 73  VVAR-------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD------------ 107
            +++             EL  +       V  K  D A +  +    D            
Sbjct: 85  AMSKSLFGPALVRSRVLELNASDERGINIVREKIKDFARMHLSQPPPDPAYRSQYPCPPF 144

Query: 108 -VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA-TTRVGL 165
            ++ +DE   ++   +  L   ME +                   SR T        V  
Sbjct: 145 KIIILDEADSMTHDAQSALRRTMEKY-------------------SRITRFCLVCNYVTR 185

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           + +P+  R     R    +    +  +   A++  L + D     +   S G  R A   
Sbjct: 186 IIDPVASRCS-KFRFKVLDGSAAQNRLVEIARMEKLDLEDNVVETLLRCSDGDLRKAITF 244

Query: 226 LRRVRDFAEVAHAKTITREIADAALL 251
           ++     A     K       +  L 
Sbjct: 245 MQSSARLARYGSGKKKDTSDKEMELD 270


>gi|295107929|emb|CBL21882.1| DNA polymerase III, subunits gamma and tau [Ruminococcus obeum
           A2-162]
          Length = 529

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 81/230 (35%), Gaps = 21/230 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP    +  GQ    + L   I A +         LF G  G GKTT+A+++A+
Sbjct: 5   ALYRKFRPDNFADVKGQDHIVTTLTNQINANRIGHAY----LFCGTRGTGKTTVAKILAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +         P      ++   +      +V+ ID      +  +  I EE+ Y   E 
Sbjct: 61  AVNCEHPINGSPCNEC--EMCKAIQAGTSMNVIEIDAASNNGVDNIREIREEVTYRPTEG 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++   S    I ATT    +   +  R       + 
Sbjct: 119 KYKVYIIDEVHMLSTGAFNALLKTLEEPPSYVIFILATTEAHKIPITILSRCQ-RYDFHR 177

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
             I+ +   +    K+ G+   ++A   +A    G+ R A  LL +   F
Sbjct: 178 ISIDTIAARLSELLKVEGVEAEEKAIRYVAKAGDGSMRDALSLLDQCIAF 227


>gi|222623647|gb|EEE57779.1| hypothetical protein OsJ_08323 [Oryza sativa Japonica Group]
          Length = 612

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 49/196 (25%), Positives = 83/196 (42%), Gaps = 21/196 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA---------GDLAALLTNLEDRD 107
           VLF GPPG GKT+ A+V+A++ GV        +I            G + +L  +L D  
Sbjct: 383 VLFEGPPGTGKTSSARVIAKQAGVPLLYVPLEIIMSKYYGESERLLGSVFSLANDLPDGG 442

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           ++F+DE+   +   +  ++ A     L +++ +       +    R  +IAAT R   L 
Sbjct: 443 IIFLDEVDSFASARDSEMHEATRRI-LSVILRQIDGFEQDR----RVVVIAATNRKEDLD 497

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             L  RF   I  +  + +    I  + AK    +       E+   S  T  ++GR +R
Sbjct: 498 PALISRFDSIICFDLPDQQTRAEISAQYAKHLTKS-------ELFQFSLATEEMSGRDIR 550

Query: 228 RVRDFAEVAHAKTITR 243
            +   AE   A  + R
Sbjct: 551 DICQQAERHWASKLIR 566


>gi|149238059|ref|XP_001524906.1| ribosome biogenesis ATPase RIX7 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146451503|gb|EDK45759.1| ribosome biogenesis ATPase RIX7 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 832

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 54/234 (23%), Positives = 89/234 (38%), Gaps = 18/234 (7%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLED 105
           E    VL  GPPG GKTT+A  +A EL V F + S P I           L  L    + 
Sbjct: 227 EPPRGVLLYGPPGCGKTTVANALAGELKVPFINISAPSIVSGMSGESEKKLRDLFEEAKS 286

Query: 106 RD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
               ++F+DEI  ++   +      ME   +  ++      R    N     +I AT R 
Sbjct: 287 VAPCIIFMDEIDAITPKRDGGAQREMERRIVAQLLTLMDELRMENTNNKPVIVIGATNRP 346

Query: 164 GLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRI 221
             L + L+   RF   I LN       ++I++  A    + +  E+       S+ TP  
Sbjct: 347 DSLDSALRRAGRFDREICLNVPNESQRESILR--AMTKDIKLDGESLFNYRELSKLTPGY 404

Query: 222 AGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGF-DQLDLRYLTMIARN 274
            G  L+ +   A          +    +L++   +K    D +D+    ++   
Sbjct: 405 VGADLKSLVTAA-----GVFAIKRIFESLIQREDEKEAVSDGMDIDVRELLNDQ 453



 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 77/232 (33%), Gaps = 17/232 (7%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLT 101
           K    A   VL  GPPG GKT LA+ VA E   NF S  GP +           +  +  
Sbjct: 552 KVGITAPSGVLMWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESEKAVRQVFQ 611

Query: 102 NLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA 159
                   ++F DE+  L    +  +  +       L+            +     +I A
Sbjct: 612 RARASTPCIIFFDELDALVPRRDNSMSESSSRVVNTLLTELDGLN-----DRKGVFVIGA 666

Query: 160 TTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVT-DEAACEIAMRSR 216
           T R  ++   +    R    + +     ++   I++   +     +  D    EIA   R
Sbjct: 667 TNRPDMIDPAMLRPGRLDKTLYIQLPTPDERFEILKTIVRANQSPIDNDVNLHEIAHEER 726

Query: 217 GTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA-IDKMGFDQLDLRY 267
                   L   V++ A  A  ++         L      D    +++D++ 
Sbjct: 727 CRNFSGADLSSLVKEAAVSALKRSFFHSHKLLNLDLSQFYDVNDDNEIDIKV 778


>gi|169841473|ref|ZP_02874586.1| recombination factor protein RarA [candidate division TM7
           single-cell isolate TM7a]
          Length = 151

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/146 (25%), Positives = 62/146 (42%), Gaps = 25/146 (17%)

Query: 88  PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSAR 145
             I    ++A    NL+ R VLF+DEIHR S + ++   P +E   + L+    E PS  
Sbjct: 11  KEINNIIEIARQNWNLQLRTVLFVDEIHRFSKVQQDAFLPHIESGLITLIGATTENPSFE 70

Query: 146 SVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAV-- 203
            +   LSR  ++           PL+D+             D++ I+ +  +    +   
Sbjct: 71  IITPLLSRVKVVTL--------KPLEDK-------------DIQQILTKAIEKLAKSKLV 109

Query: 204 TDEAACEIAMRSRGTPRIAGRLLRRV 229
           T+E+   +A  S G  R+A   L  V
Sbjct: 110 TNESIEYLAHISSGDARVALGNLELV 135


>gi|60682540|ref|YP_212684.1| putative DNA polymerase III [Bacteroides fragilis NCTC 9343]
 gi|60493974|emb|CAH08766.1| putative DNA polymerase III [Bacteroides fragilis NCTC 9343]
          Length = 614

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 76/228 (33%), Gaps = 20/228 (8%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T E   GQ    + LK  I   K         LF GP G+GKTT A++ A+ +
Sbjct: 8   ARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAY----LFCGPRGVGKTTCARIFAKTI 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL-----YPAMEDFQ 133
                +  G    +     A        ++  +D     S+     L      P      
Sbjct: 64  NCMNLTADGEACNECESCVA-FNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKY 122

Query: 134 LDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
              ++ E             ++++        I ATT    +   +  R  I    N   
Sbjct: 123 KVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQI-YDFNRIS 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           ++D    +   A   G+    EA   IA+++ G  R A  +  +V  F
Sbjct: 182 VDDTVNHLTYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSF 229


>gi|297170606|gb|ADI21632.1| DNA polymerase III, gamma/tau subunits [uncultured myxobacterium
           HF0130_06F04]
          Length = 633

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 62/319 (19%), Positives = 104/319 (32%), Gaps = 34/319 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RPR   +  GQ      L   I   +         LF G  G+GKTT A+++A 
Sbjct: 5   ALARKYRPRLFADIVGQEHVVQTLTNAISMDRVHHA----FLFTGARGVGKTTTARILAA 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL------YPAME 130
            L       + PV+     + A + +    DVL ID      +     L       P+  
Sbjct: 61  ALNAEGGPATEPVLD--DSICADIASGACPDVLEIDGASNTGVDNIRELRENVRYLPSRA 118

Query: 131 DFQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD---RFGIPIR 179
            F+L ++               ++++   +    I ATT    +   +     RF     
Sbjct: 119 RFKLYIIDEVHMLSTAAFNALLKTLEEPPAHVKFIFATTEPHKIPVTILSRCQRFDFRKV 178

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
                +E L++I+ +     G       A E    ++G+ R A  LL +V  F       
Sbjct: 179 PMALLVEHLRSILDKEGLSLGPEAVQAVARE----AQGSVRDAMSLLDQVLSFTGGQPDD 234

Query: 240 TITRE----IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDA 295
               E    +    +  L    +  +  DL  L       G     + T+          
Sbjct: 235 QQVIEALGIVDRQTIFELLDSVIARNADDLLALIARIDARGHELSDVCTLLVEHIRDVMV 294

Query: 296 IEDLIEPYMIQQGFIQRTP 314
            +   EP   Q+   +R+P
Sbjct: 295 FKSAKEP---QKVLGERSP 310


>gi|291562955|emb|CBL41771.1| DNA polymerase III, subunits gamma and tau [butyrate-producing
           bacterium SS3/4]
          Length = 572

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 81/224 (36%), Gaps = 21/224 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+   +  GQ      L+  I + +         LF G  G GKTT+A+++AR +    
Sbjct: 11  RPQVFADVKGQDHIVKTLQNQIGSGRIGHAY----LFCGTRGTGKTTVAKILARAVNCEH 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P   +      +L       V+ ID      +  +  I E++ YP  E      +
Sbjct: 67  PVDGSP-CGECPSCKQILAGTSLN-VVEIDAASNNGVENIREIREQVQYPPTEGKYRVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++   S    I ATT V  +   +  R           ++ +
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPSYVIFILATTEVHKIPITVLSRCQ-RYDFRRITLDTI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
              ++   +   + V D+A   +A    G+ R A  LL +   F
Sbjct: 184 TARLKELTEAENMPVEDKALRYVAKAGDGSMRDALSLLDQCAAF 227


>gi|221055976|ref|XP_002259126.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
           knowlesi strain H]
 gi|193809197|emb|CAQ39899.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
           knowlesi strain H]
          Length = 655

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 69/178 (38%), Gaps = 25/178 (14%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGV-----NFRSTSGPVIAKAGDLAALLTNL-EDRDVL 109
           +++  GPPG GK++L  V+  +           +     + K  D + +   L + R +L
Sbjct: 226 NLILCGPPGSGKSSLVNVIKNKTNNLFISLFHLNNLNNELRKIYDQSVINYKLSKKRTIL 285

Query: 110 FIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
            I +I+RL+   +E L   ++     L+                         + +L   
Sbjct: 286 CIKDINRLNKNQQENLLLILKKGYFYLLAT------------------CLFNPMNILNAS 327

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
           L  R  + + LN Y+  +L  I++R      + + D A   I   S G  R+A  ++ 
Sbjct: 328 LSSRC-LYLYLNAYDKIELALIIKRIINKLDIDIEDNALNIIMNHSCGDARVAINMIE 384


>gi|115448583|ref|NP_001048071.1| Os02g0740300 [Oryza sativa Japonica Group]
 gi|46390305|dbj|BAD15754.1| putative AAA family ATPase [Oryza sativa Japonica Group]
 gi|113537602|dbj|BAF09985.1| Os02g0740300 [Oryza sativa Japonica Group]
 gi|215695439|dbj|BAG90630.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 611

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 49/196 (25%), Positives = 83/196 (42%), Gaps = 21/196 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA---------GDLAALLTNLEDRD 107
           VLF GPPG GKT+ A+V+A++ GV        +I            G + +L  +L D  
Sbjct: 382 VLFEGPPGTGKTSSARVIAKQAGVPLLYVPLEIIMSKYYGESERLLGSVFSLANDLPDGG 441

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           ++F+DE+   +   +  ++ A     L +++ +       +    R  +IAAT R   L 
Sbjct: 442 IIFLDEVDSFASARDSEMHEATRRI-LSVILRQIDGFEQDR----RVVVIAATNRKEDLD 496

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             L  RF   I  +  + +    I  + AK    +       E+   S  T  ++GR +R
Sbjct: 497 PALISRFDSIICFDLPDQQTRAEISAQYAKHLTKS-------ELFQFSLATEEMSGRDIR 549

Query: 228 RVRDFAEVAHAKTITR 243
            +   AE   A  + R
Sbjct: 550 DICQQAERHWASKLIR 565


>gi|255955413|ref|XP_002568459.1| Pc21g14450 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211590170|emb|CAP96342.1| Pc21g14450 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 392

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 82/228 (35%), Gaps = 17/228 (7%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
                   +   RP +L++ +G  +  + +  F+E  +     L H+L  GPPG GKT+ 
Sbjct: 35  EAQDNLPWVEKYRPSSLDDVSGHQDILATINRFVETNR-----LPHLLLYGPPGTGKTST 89

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAAL-LTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
              +AR +          +   A D   + +   + +   F       ++  +      +
Sbjct: 90  ILALARRIYGTKNMRQMVLELNASDDRGIDVVREQIKT--FASTKQIFNMAPQGTAGSPL 147

Query: 130 EDFQLDLMVGEGPSARSVKINLSRF--------TLIAATTRVGLLTNPLQDRFGIPIRLN 181
             F+L ++        + ++ L R                    L+  L  R        
Sbjct: 148 AGFKLIILDEADAMTSTAQMALRRIMERYTANTRFCVIANYTHKLSPALLSRCTRFRFSP 207

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
             E++ ++T+V +  +  G+ +  +A   +   S+G  R A  +L+  
Sbjct: 208 LKEVD-IRTLVDQVIEKEGVKIQPDAVDSLVTLSKGDMRRALNVLQAC 254


>gi|168030360|ref|XP_001767691.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162681011|gb|EDQ67442.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 338

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 50/243 (20%), Positives = 79/243 (32%), Gaps = 44/243 (18%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           ++  +      +   RPR +++   Q E    L   +E        L H+LF GPPG GK
Sbjct: 1   MAPVMQSTQQWVEKYRPRKVKDVAHQEEVVRTLTNTLETG-----NLPHLLFYGPPGTGK 55

Query: 68  TTLAQVVAR-------------ELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRD 107
           TT A  +               EL  +       V  K  D A +               
Sbjct: 56  TTTALAICHQLFGPELYKTRVLELNASDDRGINVVRTKIKDFAGVAVGAGVSGYPCPPFK 115

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           VL +DE   ++   +  L   ME++                  ++RF        V  + 
Sbjct: 116 VLILDEADSMTEDAQNALRRTMENYS----------------KVTRF--CFICNYVSRII 157

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
            PL  R          E   ++  +Q   +  GL +  EA   ++  S G  R A   L+
Sbjct: 158 EPLASRCAKFRFKPLLEN-VMQNRIQYICQEEGLKLDQEALSTLSRVSEGDLRRAITCLQ 216

Query: 228 RVR 230
              
Sbjct: 217 CAV 219


>gi|134096866|ref|YP_001102527.1| putative DNA polymerase III gamma subunit [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133909489|emb|CAL99601.1| putative DNA polymerase III gamma subunit [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 816

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/239 (17%), Positives = 78/239 (32%), Gaps = 27/239 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T  E  GQ      L+  + + +         LF GP G GKT+ A+++AR
Sbjct: 4   ALYRKYRPATFAEVVGQEHVTEPLRTALASGRINHAY----LFSGPRGCGKTSSARILAR 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR----DVLFIDEIHRLSIIVEEILY------ 126
            L        GP     G+  + +    +     DV+ +D      +     L       
Sbjct: 60  SLNC----AQGPTADPCGECDSCVALAPEGGGSVDVVELDAASHGGVDDTRELRDRAFFA 115

Query: 127 PAMEDFQLDLMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
           PA   +++ ++         G     + V+        + ATT    +   ++ R     
Sbjct: 116 PAQSRYRIFIIDEAHMVTTQGFNALLKIVEEPPEHLIFVFATTEPDKVLTTIRSR-THHY 174

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                    ++ +++R      + V       +     G+ R    +L ++   A    
Sbjct: 175 PFRLMPPGVMRELLERICDQESVRVEPAVYPLVLRAGGGSARDTLSVLDQLLAGAGEEG 233


>gi|325990141|ref|YP_004249840.1| DNA polymerase III subunits gamma and tau [Mycoplasma suis KI3806]
 gi|323575226|emb|CBZ40891.1| DNA polymerase III, subunits gamma and tau [Mycoplasma suis]
          Length = 649

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 55/300 (18%), Positives = 104/300 (34%), Gaps = 36/300 (12%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +  RP+   E  GQ  +    K+ I   K +A+ +   LF GP G GKTT A++ +R + 
Sbjct: 4   NKYRPQFFRELVGQEFSK---KLLINILKQKAD-VHSFLFYGPNGTGKTTSARLFSRAIN 59

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII------VEEILYPAMEDFQ 133
                  G  I    +   +       D++ ID      +           +YP +   +
Sbjct: 60  CENF-LEGEDICGKCEACKISREEGCTDIIEIDGATNNGVEFIREFIKNNAIYPPLLLKK 118

Query: 134 LDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
              ++ E             + ++   S   LI  TT +  +   +  R    +  +  E
Sbjct: 119 KIYLIDEAHCLSIQAWNSLLKIIEEPPSHLILIFLTTEIHKIIPTILSRCQ-KLLFSPLE 177

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
              L + +++ + L       E   +I   S G+ R +  LL +   F      K    E
Sbjct: 178 ENTLISFLEKISSLENKETKKELLKKIFEESNGSVRESLVLLEK--TFINQKSDKEELIE 235

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
                         G + + L  L +I ++       +  +S  LS      E +++  +
Sbjct: 236 NL-----------EGIETISLELLNLILKS--NYSESLAKLSENLSSSTKIFEIILDRLL 282


>gi|238882613|gb|EEQ46251.1| ribosome biogenesis ATPase RIX7 [Candida albicans WO-1]
          Length = 827

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 88/224 (39%), Gaps = 15/224 (6%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLED 105
           E    VL  GPPG GKTT+A  +A EL V F + S P +           L  +    + 
Sbjct: 225 EPPRGVLLYGPPGCGKTTIANALAGELKVPFINISAPSVVSGMSGESEKKLREIFEEAKQ 284

Query: 106 --RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
               ++F+DEI  ++   +      ME   +  ++         K       +I AT R 
Sbjct: 285 IAPCLIFMDEIDAITPKRDGGAQREMEKRIVAQLLTLMDELTLEKTGGKPVVVIGATNRP 344

Query: 164 GLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRI 221
             L + L+   RF   I LN    E   +I++  A    + + +         S+ TP  
Sbjct: 345 DSLDSALRRAGRFDREICLNVPNEEQRISILK--AMTKNIKLENGEHFNYRELSKLTPGY 402

Query: 222 AGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDL 265
            G  L+ +   A ++  K I   +++   L+     +  D +D+
Sbjct: 403 VGADLKSLVTAAGISAIKRIFETMSE---LQEESHSVKDDSMDV 443



 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 69/227 (30%), Gaps = 27/227 (11%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLT 101
           K    A   VL  GPPG GKT LA+ VA E   NF S  GP +           +  +  
Sbjct: 550 KVGIAAPAGVLMWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESEKAVRQVFQ 609

Query: 102 NLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA 159
                   ++F DE+  L    +  +  +       L+            +     +I A
Sbjct: 610 RARASTPCIIFFDELDALVPRRDTSMSESSSRVVNTLLTELDGLN-----DRKGVFVIGA 664

Query: 160 TTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRG 217
           T R  ++   +    R    + +     E+   I++    L     +             
Sbjct: 665 TNRPDMIDPAMLRPGRLDKTLYIELPTPEERLEILK---TLVRTNNSPLHRNVDLNAISR 721

Query: 218 TPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLD 264
            PR               A   ++ +E    AL +         +LD
Sbjct: 722 DPRCGN---------FSGADLSSLVKEAGVWALKKRFFQNQKIQELD 759


>gi|218191547|gb|EEC73974.1| hypothetical protein OsI_08877 [Oryza sativa Indica Group]
          Length = 612

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 49/196 (25%), Positives = 83/196 (42%), Gaps = 21/196 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA---------GDLAALLTNLEDRD 107
           VLF GPPG GKT+ A+V+A++ GV        +I            G + +L  +L D  
Sbjct: 383 VLFEGPPGTGKTSSARVIAKQAGVPLLYVPLEIIMSKYYGESERLLGSVFSLANDLPDGG 442

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           ++F+DE+   +   +  ++ A     L +++ +       +    R  +IAAT R   L 
Sbjct: 443 IIFLDEVDSFASARDSEMHEATRRI-LSVILRQIDGFEQDR----RVVVIAATNRKEDLD 497

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             L  RF   I  +  + +    I  + AK    +       E+   S  T  ++GR +R
Sbjct: 498 PALISRFDSIICFDLPDQQTRAEISAQYAKHLTKS-------ELFQFSLATEEMSGRDIR 550

Query: 228 RVRDFAEVAHAKTITR 243
            +   AE   A  + R
Sbjct: 551 DICQQAERHWASKLIR 566


>gi|298376006|ref|ZP_06985962.1| DNA polymerase III, gamma/tau subunit [Bacteroides sp. 3_1_19]
 gi|298267043|gb|EFI08700.1| DNA polymerase III, gamma/tau subunit [Bacteroides sp. 3_1_19]
          Length = 586

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 80/228 (35%), Gaps = 20/228 (8%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T     GQ    + LK  I++ K         LF GP G+GKT+ A++ A+ +
Sbjct: 8   ARKYRPSTFRSVVGQKSLTTTLKNAIQSNKLAHAY----LFCGPRGVGKTSCARIFAKTI 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI------IVEEILYPAMEDF 132
                +  G          A        ++  +D     S+      I +  + P +  +
Sbjct: 64  NCLNPTADGEACNACESCRA-FNEQRSYNIHELDAASNNSVDDIRTLIDQVRIPPPIGKY 122

Query: 133 QLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           ++ ++               ++++        I ATT    +   +  R  I        
Sbjct: 123 KVFIIDEVHMLTTAAFNAFLKTLEEPPHHALFILATTEKHKVLPTILSRCQIYDFSRI-S 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           I D+   +Q  +   G+    EA   IA ++ G  R A  +  +V  F
Sbjct: 182 IADMVEHLQYVSSQEGVTAEPEALNVIAQKADGGMRDALSIFDQVVSF 229


>gi|170577995|ref|XP_001894218.1| replication factor C, 37kDa subunit [Brugia malayi]
 gi|158599258|gb|EDP36928.1| replication factor C, 37kDa subunit, putative [Brugia malayi]
          Length = 315

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 52/241 (21%), Positives = 84/241 (34%), Gaps = 46/241 (19%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
             S E   +   RPR +EE   Q E  S LK  ++ A      L ++LF GPPG GKT+ 
Sbjct: 16  TTSMEIPWVEKYRPRKVEEVAFQNEVVSVLKKVLQGAD-----LPNLLFYGPPGTGKTSA 70

Query: 71  AQVVAR--------------ELGVNFRSTSGPVIAKAGDLA--ALLTNLEDR------DV 108
           A  + R              E+  +       V  K  + A  A+ ++L D        V
Sbjct: 71  AIALCRQLFRNTDTYRDRVMEMNASDERGINIVRNKIKEFARRAVSSHLPDGSPVVGLKV 130

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           + +DE   ++   +  L   ME                     +RF LI     +  + +
Sbjct: 131 IILDEADAMTTPAQAALRRTMERESRT----------------TRFFLIC--NYITRIID 172

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
           PL  R     R      E  +  ++   +   +     A  E+     G  R +   L+ 
Sbjct: 173 PLTSRCA-KFRFKSISSESQEKRLKWICQNENIEFDPLAISELIELCDGDMRKSVTALQT 231

Query: 229 V 229
           +
Sbjct: 232 I 232


>gi|87301610|ref|ZP_01084450.1| DNA polymerase, gamma and tau subunits [Synechococcus sp. WH 5701]
 gi|87283827|gb|EAQ75781.1| DNA polymerase, gamma and tau subunits [Synechococcus sp. WH 5701]
          Length = 607

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 44/214 (20%), Positives = 84/214 (39%), Gaps = 19/214 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  ++  GQ    S L     +A  +       LF GP G GKT+ A+++AR L    
Sbjct: 15  RPQRFDQLVGQEAVASTL----TSALRQNRIAPAYLFSGPRGTGKTSSARILARSLNCLT 70

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
            +   P    + +L   +T     DV+ ID      +  +  ++E   +  ++      +
Sbjct: 71  AAGPTPDPCGSCELCRSITAGNALDVIEIDAASNTGVDNIRELIERSRFAPVQARWKVYV 130

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++    R   + ATT    +   +  R           +E L
Sbjct: 131 IDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTILSRCQ-RFDFRRIPLEAL 189

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
           +  ++  A    + +T EA   +A+R++G  R A
Sbjct: 190 EGHLRFIASEEEIGITPEALHVVALRAQGGLRDA 223


>gi|85712669|ref|ZP_01043715.1| DNA polymerase III, gamma/tau subunits [Idiomarina baltica OS145]
 gi|85693519|gb|EAQ31471.1| DNA polymerase III, gamma/tau subunits [Idiomarina baltica OS145]
          Length = 640

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 51/259 (19%), Positives = 81/259 (31%), Gaps = 59/259 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP   ++  GQ      L   +E      + L H  LF G  G+GKTT+A+++A+ L   
Sbjct: 11  RPMQFDQVVGQQHVLEPLFHALE-----QQRLHHAYLFTGTRGVGKTTIARILAKALNCE 65

Query: 82  F------------------------RSTSGPVIAKAGDLAALLTNLEDRD------VLFI 111
                                             K  D   LL N++ R       V  I
Sbjct: 66  RGVSARPCGECPSCEEIEQGRFVDLIEVDAASRTKVEDTRELLDNVQYRPTRGRYKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSRHSFNALLKTLEE------------------PPEHVKFLLATTDPQKLPVTVV 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L   + E +   ++   +   +    +A   +A  ++G+ R A  L     D
Sbjct: 168 SRC-LQFNLRALDREQIVGQLEYVLENENVPHDAQALTLLAQSAKGSMRDALSL----TD 222

Query: 232 FAEVAHAKTITREIADAAL 250
            A       +  E     L
Sbjct: 223 QAIAQGQGKVQVESVQRML 241


>gi|239907167|ref|YP_002953908.1| DNA polymerase III gamma and tau subunit [Desulfovibrio magneticus
           RS-1]
 gi|239797033|dbj|BAH76022.1| DNA polymerase III gamma and tau subunit [Desulfovibrio magneticus
           RS-1]
          Length = 654

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 85/227 (37%), Gaps = 27/227 (11%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +  RP+   +  GQ       ++   AA A        LF G  G+GKTTLA+V+A+ L 
Sbjct: 8   AKYRPQRFADVAGQDAVK---RILSRAA-AEDRIAPAYLFSGTRGVGKTTLARVLAKALN 63

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQL 134
               + +G           +   +   DV+ ID     ++     + E++ Y  +     
Sbjct: 64  CET-APTGEPCNVCSQCRQITAGVSP-DVIEIDAATHGKVDDARRLKEDVGYAPLNSRYK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             ++ E             ++++    R T I ATT        +  R    +     + 
Sbjct: 122 VFIIDEAHMLTTAAFNALLKTLEEPPGRVTFILATTEPHKFPATIISRCQHYLFKRLAQS 181

Query: 186 E---DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           E    L +++ R A    +    +A   IA R  G+ R +  LL +V
Sbjct: 182 ELEAHLSSVLMREA----VPYEAKAVSLIARRGAGSVRDSMSLLAQV 224


>gi|170094016|ref|XP_001878229.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164646683|gb|EDR10928.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 359

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 39/242 (16%), Positives = 72/242 (29%), Gaps = 49/242 (20%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+T++E + Q    + L+  + +       L H+LF GPPG GKT+    +AR
Sbjct: 26  PWVEKYRPKTIDEVSAQEHTVAVLRKTLTS-----TNLPHMLFYGPPGTGKTSTILALAR 80

Query: 77  E------LGVNFRSTSGPVIAKAGDLAALLTNLEDRD-------------------VLFI 111
           +              +         +   + N   +                    ++ +
Sbjct: 81  QLFGPDNFRNRVLELNASDERGISIVRDKIKNFARQTPRAQAVASDGKSYPCPPYKIIIL 140

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE   ++   +  L   ME             AR  +  L           V  +  PL 
Sbjct: 141 DEADSMTQDAQGALRRIME-----------TYARITRFCL-------VCNYVTRIIEPLA 182

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R     R    + +   + +   A    +         +   S G  R A   L+    
Sbjct: 183 SRCS-KFRFTPLDSKSSFSRLSYIATAEHIDTNPAVINALISTSSGDLRRAITYLQSASR 241

Query: 232 FA 233
            +
Sbjct: 242 LS 243


>gi|329896154|ref|ZP_08271367.1| DNA polymerase III subunits gamma and tau [gamma proteobacterium
           IMCC3088]
 gi|328921973|gb|EGG29338.1| DNA polymerase III subunits gamma and tau [gamma proteobacterium
           IMCC3088]
          Length = 619

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 58/324 (17%), Positives = 98/324 (30%), Gaps = 65/324 (20%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARE 77
               RP+   E  GQ      LK  I A     + L H  LF G  G+GKTT+A+V+A+ 
Sbjct: 7   ARKYRPQIFREMVGQEHV---LKALINA--LDHDRLHHAYLFTGTRGVGKTTVARVLAKC 61

Query: 78  LGVNFRSTS------------------------GPVIAKAGDLAALLTNLE------DRD 107
              +   +S                             K  D   LL N++         
Sbjct: 62  FNCDQGVSSEPCGVCSACQEIAEGRSVDLIEVDAASRTKVEDTRELLENVQYAPSRSRYK 121

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           +  IDE+H LS      L   +E+                         + ATT    L 
Sbjct: 122 IYLIDEVHMLSSHSFNALLKTLEE------------------PPEHAKFLLATTDPQKLP 163

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             +  R  +   L     + +   +    +   +     A  E+   + G+ R A  L  
Sbjct: 164 ATILSRC-LQFHLKNLSPDRISDYLAHVLEREMIQADPAALAELGRAAEGSMRDALSL-- 220

Query: 228 RVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISA 287
              D A       +      + L  +   K+      L  L  +        +   ++ A
Sbjct: 221 --TDQAIAFGGGQVRAADVSSMLGSIGSGKV------LPLLQALQAGQAKDMLDAVSLLA 272

Query: 288 GLSEPRDAIEDLIEPYMIQQGFIQ 311
                   + D+++ ++ Q    Q
Sbjct: 273 EHGADFGKVVDMLQQWLHQIALAQ 296


>gi|308270884|emb|CBX27494.1| hypothetical protein N47_H23160 [uncultured Desulfobacterium sp.]
          Length = 571

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 79/232 (34%), Gaps = 25/232 (10%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+  +   GQ      L   I   +        VL  GP G GKTT+A+++A+ +
Sbjct: 19  ARKYRPQNFDTVVGQKHVTQTLANAISTGRVAHA----VLLSGPRGTGKTTVARILAKAM 74

Query: 79  GVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
                 T  P  V     ++    T     DVL ID      +  +  + + I Y     
Sbjct: 75  NCIEGPTPSPCNVCRSCTEI----TIGSCVDVLEIDGASNNGVENVRDLRDNIKYKPAYS 130

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT    +   +  R         
Sbjct: 131 RYKIYIIDEVHMLSTQAFNALLKTLEEPPPHVMFIFATTEPHKIPVTILSRCQRHDFKRI 190

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
             ++D+   +    K   + V+ E+   IA  + G  R A  LL  V   +E
Sbjct: 191 -GLDDITDQMLYICKKENVDVSSESLTAIARAAGGCMRDALSLLDLVLSCSE 241


>gi|256750615|ref|ZP_05491501.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|256750455|gb|EEU63473.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter ethanolicus
           CCSD1]
          Length = 510

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 57/244 (23%), Positives = 89/244 (36%), Gaps = 22/244 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAA-------KARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  E    LKV I+         K  A+    +LF GPPG GKT LA  +A E 
Sbjct: 82  TFKDVAGLDEVIDELKVIIDFMTNTEKYNKMGAKIPKGILFYGPPGTGKTLLATALAGET 141

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAME 130
              F S SG           A  + AL    +     ++FIDEI  +          + +
Sbjct: 142 NSTFISASGSEFVEKYVGVGASRIRALFAKAKKSAPSIIFIDEIDAVGTKRNTD-NNSEK 200

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
           D  L+ ++ E     S +       +I AT R+ +L   L    RF   I +    ++  
Sbjct: 201 DQTLNQLLVEMDGFNSNEG----IIVIGATNRIDMLDEALLRPGRFDRTIHIGAPNMKAR 256

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             I++   +   L  T   +         T      +       A + +   I +E  + 
Sbjct: 257 LEILKVHTRNKPLDETVSLSELARKTHGMTGAHLATMCNEAAILAVMKNKSKIGKEEFEE 316

Query: 249 ALLR 252
           AL R
Sbjct: 317 ALER 320


>gi|67540694|ref|XP_664121.1| hypothetical protein AN6517.2 [Aspergillus nidulans FGSC A4]
 gi|40738667|gb|EAA57857.1| hypothetical protein AN6517.2 [Aspergillus nidulans FGSC A4]
 gi|259480087|tpe|CBF70899.1| TPA: subunit of heteropentameric replication factor (Eurofung)
           [Aspergillus nidulans FGSC A4]
          Length = 289

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 46/243 (18%), Positives = 81/243 (33%), Gaps = 39/243 (16%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   +   RP  L++  G  E    LK+      A+   + HV+  G PG+GKTT    +
Sbjct: 27  ELPWVEKYRPVFLDDVVGNTETVERLKII-----AKDGNMPHVIISGMPGIGKTTSILCL 81

Query: 75  AR------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIHRLSII 120
           AR            EL  +       V  +    A     L      ++ +DE   ++  
Sbjct: 82  ARQLLGDSYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRHKIVILDEADSMTSG 141

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            ++ L   ME +                   +RF    A  +   +  PLQ R  I    
Sbjct: 142 AQQALRRTMEIYSST----------------TRFAF--ACNQSNKIIEPLQSRCAILRYA 183

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD-FAEVAHAK 239
              + + +K  +++      +  T++    +   + G  R A   L+     F  V+   
Sbjct: 184 RLTDAQIVKR-LKQVCDAEQVKYTEDGLAALVFSAEGDMRQALNNLQSTWSGFGLVSGDN 242

Query: 240 TIT 242
              
Sbjct: 243 VFR 245


>gi|154684538|ref|YP_001419699.1| DNA polymerase III subunits gamma and tau [Bacillus
           amyloliquefaciens FZB42]
 gi|154350389|gb|ABS72468.1| DnaX [Bacillus amyloliquefaciens FZB42]
          Length = 563

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 83/233 (35%), Gaps = 25/233 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RP+  E+  GQ      L    + A  + +     LF GP G GKT+ A++ A+
Sbjct: 5   ALYRVFRPQQFEDVVGQEHITKTL----QNALLQKKFSHAYLFSGPRGTGKTSAAKIFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAAL--LTNLEDRDVLFID-----EIHRLSIIVEEILYPAM 129
            +         PV     + AA   +TN    DV+ ID      +  +  I +++ +   
Sbjct: 61  AVNCEH----APVEEPCNECAACKGITNGSISDVIEIDAASNNGVDEIRDIRDKVKFAPS 116

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                  ++ E             ++++   +    I ATT    +   +  R       
Sbjct: 117 AVTYKVYIIDEVHMLSIGAFNALLKTLEEPPAHCIFILATTEPHKIPLTIISRCQ-RFDF 175

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                + +   ++       L V + A   IA  + G  R A  LL +   F+
Sbjct: 176 KRITSKAIVGRMKTIVDAEQLKVEEGALDIIASAADGGMRDALSLLDQAVSFS 228


>gi|150865535|ref|XP_001384792.2| AAA ATPase [Scheffersomyces stipitis CBS 6054]
 gi|149386791|gb|ABN66763.2| AAA ATPase [Scheffersomyces stipitis CBS 6054]
          Length = 832

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 55/226 (24%), Positives = 88/226 (38%), Gaps = 16/226 (7%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLED 105
           E    VL  GPPG GKTT+A  +A EL V F + S P I           L  +    + 
Sbjct: 224 EPPRGVLLYGPPGCGKTTIANALAGELQVPFINISAPSIVSGMSGESEKKLREIFDEAKT 283

Query: 106 RD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
               ++F+DEI  ++   +      ME   +  ++         K       ++ AT R 
Sbjct: 284 LAPCIIFMDEIDAITPKRDGGAQREMERRIVAQLLTLMDELSLGKTE-KPVIVVGATNRP 342

Query: 164 GLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRI 221
             L   L+   RF   I LN    ++  +I+++      L   D    E+A     TP  
Sbjct: 343 DSLDAALRRAGRFDREICLNVPNEDERLSILKKMTSNIKLENGDFNFRELAKM---TPGY 399

Query: 222 AGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG--FDQLDL 265
            G  L+ +   A ++  K I   +++     L  D     FD +D+
Sbjct: 400 VGADLKSLVTAAGISAIKRIFESLSEQQEELLVADSNANSFDSMDV 445



 Score = 47.8 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 77/227 (33%), Gaps = 27/227 (11%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLED 105
           K    A   VL  GPPG GKT LA+ VA E   NF S  GP +     G+    +  +  
Sbjct: 551 KVGITAPAGVLMWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESERAIRQVFS 610

Query: 106 RD------VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA 159
           R       ++F DE+  L     +          ++ ++ E         +     +I A
Sbjct: 611 RARASIPCIIFFDELDALVPRR-DASLSESSSRVVNTLLTE----LDGLNDRKGVFVIGA 665

Query: 160 TTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRG 217
           T R  ++   +    R    + +     E+   I++             A          
Sbjct: 666 TNRPDMIDPAMLRPGRLDKTLYIELPSAEERLEILK---------TLINANKTPVSVDVD 716

Query: 218 TPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLD 264
              IA     R R+F+  A   ++ RE    AL +        D LD
Sbjct: 717 LNSIAND--NRCRNFS-GADLSSLVREAGVLALKKKFFQNQKIDDLD 760


>gi|289617692|emb|CBI61415.1| unnamed protein product [Sordaria macrospora]
          Length = 357

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 77/227 (33%), Gaps = 38/227 (16%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   +   RP  L++  G  E    LK+      A+   + HV+  G PG+GKTT    +
Sbjct: 32  ELPWVEKYRPVFLDDVVGNTETIERLKII-----AKEGNMPHVIISGMPGIGKTTSVLCL 86

Query: 75  AR-----ELGVNFRSTSGPVIAKAGDLAALLTNLEDR---------DVLFIDEIHRLSII 120
           AR              +         +   +     +          ++ +DE   ++  
Sbjct: 87  ARQLLGDAYKEAVLELNASDERGIEVVRQRIKGFAQKKVTLPPGRHKIVILDEADSMTSG 146

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            ++ L   ME +                 N +RF    A  +   +  PLQ R  I    
Sbjct: 147 AQQALRRTMEIYS----------------NTTRFAF--ACNQSNKIIEPLQSRCAILRYA 188

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
              + + +K ++Q   +   +  +D+    +   + G  R A   L+
Sbjct: 189 KLTDAQVVKRLLQ-IIEAEKVEYSDDGLAALVFSAEGDMRQAINNLQ 234


>gi|289432471|ref|YP_003462344.1| DNA polymerase III subunits gamma/tau [Dehalococcoides sp. GT]
 gi|288946191|gb|ADC73888.1| DNA polymerase III, subunits gamma and tau [Dehalococcoides sp. GT]
          Length = 570

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 50/292 (17%), Positives = 90/292 (30%), Gaps = 51/292 (17%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+TL +  GQ      LK  + + +         LF GP G GKT+  +++A+ +    
Sbjct: 14  RPQTLADLVGQEHVAHTLKNALSSGRIAQAY----LFCGPRGTGKTSTGRILAKAVNCTT 69

Query: 83  RS-------------------------TSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                                D+  L   ++      +  V  I
Sbjct: 70  NQGKGEPCNTCPMCLSITEGSSMDIIEIDAASNTGVDDIRELKEKVQYSPSLANYKVYII 129

Query: 112 DEIHRLSIIVEEILYPAMED--FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+H LS      L   +E+   ++  ++      + +   +SR           +    
Sbjct: 130 DEVHMLSNSASNALLKTLEEPPPRVIFILATTEIHKVLPTIMSRCQRFDFHRVSLVDMTR 189

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAK--------LTGLAVTDEAACEIAMRSRGTPRI 221
              +  +   +N  E E LK I  R A         L     T   A     + +    I
Sbjct: 190 KLGKISLAEGINV-EPEALKLIA-RSAGGSFRDGENLLQQIATTYGAEISLSQVQAALGI 247

Query: 222 AGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIAR 273
           +G    R++  AE  +      +     L  +  D +   Q     L  + +
Sbjct: 248 SGD--ERIKALAE--NILKKDIKNGLKTLNAVLADGLDLKQFRRELLDYLRQ 295


>gi|227358077|ref|ZP_03842419.1| DNA polymerase III Tau subunit (contains DNA polymerase III gamma
           subunit) [Proteus mirabilis ATCC 29906]
 gi|227161812|gb|EEI46844.1| DNA polymerase III Tau subunit (contains DNA polymerase III gamma
           subunit) [Proteus mirabilis ATCC 29906]
          Length = 658

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 54/245 (22%), Positives = 91/245 (37%), Gaps = 31/245 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T  +  GQ    + L     A     + L H  LF G  G+GKTT+A++ A+ L   
Sbjct: 11  RPQTFNDVVGQRHVLTAL-----ANGLDHQRLHHAYLFSGTRGVGKTTIARLFAKGLNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILY------PAMEDFQ 133
              TS P     G  A  L   + R  D++ ID   R  +     L       PA   F+
Sbjct: 66  TGITSKP----CGKCANCLEIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFK 121

Query: 134 LDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           + L+               ++++        + ATT    L   +  R  +   L   ++
Sbjct: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC-LQFHLRALDV 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           + + T +++      +     A   IA  + G+ R A  L     D A  +    ++ E+
Sbjct: 181 DQIATQLEKVLSAEHIENDVRARQLIARAADGSMRDALSL----TDQAIASGEGIVSTEV 236

Query: 246 ADAAL 250
               L
Sbjct: 237 VSRML 241


>gi|159043203|ref|YP_001531997.1| DNA polymerase III subunits gamma and tau [Dinoroseobacter shibae
           DFL 12]
 gi|157910963|gb|ABV92396.1| DNA polymerase III [Dinoroseobacter shibae DFL 12]
          Length = 587

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 61/313 (19%), Positives = 110/313 (35%), Gaps = 32/313 (10%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           +     +         RP T  +  GQ      L+   +A +         +  G  G G
Sbjct: 1   MSDTTTTGYQVLARKYRPATFADLIGQDAMVRTLRNAFQADRIAQA----FMMTGIRGTG 56

Query: 67  KTTLAQVVARELGVN-FRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDE-----IHRLS 118
           KTT A+++A+ +         GP     G        +  +  DV+ +D      I  + 
Sbjct: 57  KTTTARIIAKGMNCTGADGAGGPTTDPCGQCDNCRGIMAGQHVDVIEMDGASQTKIDDIR 116

Query: 119 IIVEEILY--PAMEDFQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
             V + +Y  PA   +++ ++               ++++   +    I ATT +  +  
Sbjct: 117 ANVLDSVYYAPASARYKIFIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPV 176

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            +  R      L   E E +   ++R A L    +TD+A   I   + G+ R A  LL  
Sbjct: 177 TVLSRCQ-RFDLRRIEPEVMIAHLRRIAGLERAEITDDALALITRAAEGSVRDAMSLL-- 233

Query: 229 VRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAG 288
             D A    A   T E   A L      ++  D  DL    ++  +  G    +    + 
Sbjct: 234 --DQAISHGAGETTAEQVRAMLGLADRGRV-MDLFDL----VMRGDAAGALTELSAQYSD 286

Query: 289 LSEPRDAIEDLIE 301
            ++P   + DL E
Sbjct: 287 GADPMAVLRDLAE 299


>gi|73748424|ref|YP_307663.1| putative DNA polymerase III, gamma and tau subunits
           [Dehalococcoides sp. CBDB1]
 gi|73660140|emb|CAI82747.1| putative DNA polymerase III, gamma and tau subunits
           [Dehalococcoides sp. CBDB1]
          Length = 570

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 50/292 (17%), Positives = 90/292 (30%), Gaps = 51/292 (17%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+TL +  GQ      LK  + + +         LF GP G GKT+  +++A+ +    
Sbjct: 14  RPQTLADLVGQEHVAHTLKNALSSGRIAQAY----LFCGPRGTGKTSTGRILAKAVNCTT 69

Query: 83  RS-------------------------TSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                                D+  L   ++      +  V  I
Sbjct: 70  NQGKGEPCNTCPMCLSITEGSSMDIIEIDAASNTGVDDIRELKEKVQYSPSLANYKVYII 129

Query: 112 DEIHRLSIIVEEILYPAMED--FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+H LS      L   +E+   ++  ++      + +   +SR           +    
Sbjct: 130 DEVHMLSNSASNALLKTLEEPPPRVIFILATTEIHKVLPTIMSRCQRFDFHRVSLVDMTR 189

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAK--------LTGLAVTDEAACEIAMRSRGTPRI 221
              +  +   +N  E E LK I  R A         L     T   A     + +    I
Sbjct: 190 KLGKISLAEGINV-EPEALKLIA-RSAGGSFRDGENLLQQIATTYGAEISLSQVQAALGI 247

Query: 222 AGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIAR 273
           +G    R++  AE  +      +     L  +  D +   Q     L  + +
Sbjct: 248 SGD--ERIKALAE--NILKKDIKNGLKTLNAVLADGLDLKQFRRELLDYLRQ 295


>gi|307265244|ref|ZP_07546802.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306919688|gb|EFN49904.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 510

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 57/244 (23%), Positives = 89/244 (36%), Gaps = 22/244 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAA-------KARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  E    LKV I+         K  A+    +LF GPPG GKT LA  +A E 
Sbjct: 82  TFKDVAGLDEVIDELKVIIDFMTNTEKYNKMGAKVPKGILFYGPPGTGKTLLATALAGET 141

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAME 130
              F S SG           A  + AL    +     ++FIDEI  +          + +
Sbjct: 142 NSTFISASGSEFVEKYVGVGASRIRALFAKAKKSAPSIIFIDEIDAVGTKRNTD-NNSEK 200

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
           D  L+ ++ E     S +       +I AT R+ +L   L    RF   I +    ++  
Sbjct: 201 DQTLNQLLVEMDGFNSNEG----IIVIGATNRIDMLDEALLRPGRFDRTIHIGAPNMKAR 256

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             I++   +   L  T   +         T      +       A + +   I +E  + 
Sbjct: 257 LEILKVHTRNKPLDETVSLSELARKTHGMTGAHLATMCNEAAILAVMKNKSKIGKEEFEE 316

Query: 249 ALLR 252
           AL R
Sbjct: 317 ALER 320


>gi|284161621|ref|YP_003400244.1| Replication factor C [Archaeoglobus profundus DSM 5631]
 gi|284011618|gb|ADB57571.1| Replication factor C [Archaeoglobus profundus DSM 5631]
          Length = 755

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 52/127 (40%), Gaps = 10/127 (7%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           + +  +   RP+TL+E   Q E    LK +++      + + H+LF GPPG GKT  A  
Sbjct: 2   EAEIWVEKYRPKTLDEVVDQEEVVKRLKNYVK-----QKNIPHLLFAGPPGTGKTATAIA 56

Query: 74  VARE-----LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           + R+        NF   +  V      L  +   +       +D+I+      E +    
Sbjct: 57  LTRDLFGENWRDNFIELNASVSKDTPILVRIDGQIRRVTFEELDKIYFKDSNEEYVKVDN 116

Query: 129 MEDFQLD 135
           +E   +D
Sbjct: 117 LEVLTVD 123



 Score = 37.7 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 48/132 (36%), Gaps = 19/132 (14%)

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           ++F+DE   L+   +  L   ME +                        I +   +  + 
Sbjct: 539 IIFLDEADALTPDAQAALRRTMEMYSKT------------------CRFILSCNYISRII 580

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
            P+Q R  +  +      E +K  ++  A+  G+ +TD+A   +   + G  R A   L+
Sbjct: 581 EPIQSRCAV-FKFKPVPPEAMKKRLKEIAEKEGVKITDDALDALVYIANGDFRKAINALQ 639

Query: 228 RVRDFAEVAHAK 239
                 EV  A+
Sbjct: 640 GAAALGEVVTAE 651


>gi|254805224|ref|YP_003083445.1| putative DNA polymerase III tau and gamma chain [Neisseria
           meningitidis alpha14]
 gi|254668766|emb|CBA06660.1| putative DNA polymerase III tau and gamma chain [Neisseria
           meningitidis alpha14]
          Length = 710

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 49/303 (16%), Positives = 90/303 (29%), Gaps = 63/303 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T  +  GQ      L+  ++  +     L H  L  G  G+GKTT+A+++A+ L   
Sbjct: 11  RPKTFADLVGQEHVVKALRNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCE 65

Query: 82  FRS------------------------TSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                                ++  +L N +         V  I
Sbjct: 66  NAQHGEPCGVCESCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYII 125

Query: 112 DEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+H LS      +   +E+    +  ++      +     LSR                
Sbjct: 126 DEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNM------- 178

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
                           + +   +        +A    A   +   + G+ R A  LL + 
Sbjct: 179 --------------TSQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQA 224

Query: 230 RDFAEVAHAKTITREIADAALLRLAIDKM-GFDQLDLRYLTMIARNFGGGPVGIETISAG 288
                 + A+   R++  A   +   + + G    D   L   A+      VG +     
Sbjct: 225 IALGSGSVAEQDVRQMIGAVDKQYLYELLTGIVNQDGEALLAKAQEMAACAVGFDN---A 281

Query: 289 LSE 291
           L E
Sbjct: 282 LGE 284


>gi|256090013|ref|XP_002581023.1| replication factor C / DNA polymerase III gamma-tau subunit
           [Schistosoma mansoni]
 gi|238666797|emb|CAZ37262.1| replication factor C / DNA polymerase III gamma-tau subunit,
           putative [Schistosoma mansoni]
          Length = 245

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 82/224 (36%), Gaps = 41/224 (18%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           I   RP ++E+     +    +K FI+      + L H+LF GPPG GKT+   ++A   
Sbjct: 5   IEKYRPSSIEDLISHDDISKTIKRFID-----NDRLPHLLFYGPPGTGKTST--ILAAAK 57

Query: 79  GVNFRSTSGPVIA-KAGDLAAL-------LTNLEDRDVL-------FIDEIHRLSIIVEE 123
            +  R  S  V+   A D   +       L+    + +         +DE   ++   + 
Sbjct: 58  RLYSRQFSSMVLELNASDDRGIDVVREQVLSFASTKTLFAGKFKLVILDEADSMTKDAQN 117

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
            L   +E F       E      +   LS+                +Q R     R    
Sbjct: 118 ALRRIIEKF------TENTRFCLICNYLSKIIP------------AIQSRC-TKFRFAPL 158

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
              D+ T +++ A   G+ +TD+    I   + G  R +  LL+
Sbjct: 159 AFNDVSTCLRKIASNEGVDLTDDGIKAIYQFASGDMRKSINLLQ 202


>gi|301311507|ref|ZP_07217434.1| DNA polymerase III, gamma and tau subunits [Bacteroides sp. 20_3]
 gi|300830593|gb|EFK61236.1| DNA polymerase III, gamma and tau subunits [Bacteroides sp. 20_3]
          Length = 586

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 80/228 (35%), Gaps = 20/228 (8%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T     GQ    + LK  I++ K         LF GP G+GKT+ A++ A+ +
Sbjct: 8   ARKYRPSTFRSVVGQKSLSTTLKNAIQSNKLAHAY----LFCGPRGVGKTSCARIFAKTI 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI------IVEEILYPAMEDF 132
                +  G          A        ++  +D     S+      I +  + P +  +
Sbjct: 64  NCLNPTADGEACNACESCRA-FNEQRSYNIHELDAASNNSVDDIRTLIDQVRIPPPIGKY 122

Query: 133 QLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           ++ ++               ++++        I ATT    +   +  R  I        
Sbjct: 123 KVFIIDEVHMLTTAAFNAFLKTLEEPPHHALFILATTEKHKVLPTILSRCQIYDFSRI-S 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           I D+   +Q  +   G+    EA   IA ++ G  R A  +  +V  F
Sbjct: 182 IADMVEHLQYVSSQEGVTAEPEALNVIAQKADGGMRDALSIFDQVVSF 229


>gi|197284051|ref|YP_002149923.1| DNA polymerase III subunits gamma/tau [Proteus mirabilis HI4320]
 gi|194681538|emb|CAR40452.1| DNA polymerase III Tau subunit (contains DNA polymerase III Gamma
           subunit) [Proteus mirabilis HI4320]
          Length = 658

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 54/245 (22%), Positives = 91/245 (37%), Gaps = 31/245 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T  +  GQ    + L     A     + L H  LF G  G+GKTT+A++ A+ L   
Sbjct: 11  RPQTFNDVVGQRHVLTAL-----ANGLDHQRLHHAYLFSGTRGVGKTTIARLFAKGLNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILY------PAMEDFQ 133
              TS P     G  A  L   + R  D++ ID   R  +     L       PA   F+
Sbjct: 66  TGITSKP----CGKCANCLEIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFK 121

Query: 134 LDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           + L+               ++++        + ATT    L   +  R  +   L   ++
Sbjct: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC-LQFHLRALDV 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           + + T +++      +     A   IA  + G+ R A  L     D A  +    ++ E+
Sbjct: 181 DQIATQLEKVLSAEHIENDVRARQLIARAADGSMRDALSL----TDQAIASGEGIVSTEV 236

Query: 246 ADAAL 250
               L
Sbjct: 237 VSRML 241


>gi|326790541|ref|YP_004308362.1| ATP-dependent metalloprotease FtsH [Clostridium lentocellum DSM
           5427]
 gi|326541305|gb|ADZ83164.1| ATP-dependent metalloprotease FtsH [Clostridium lentocellum DSM
           5427]
          Length = 579

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 49/239 (20%), Positives = 92/239 (38%), Gaps = 23/239 (9%)

Query: 47  AKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI---------AKAGDLA 97
           AK  A     ++  GPPG GKT +A+ +A+E GV F S SG            ++  D+ 
Sbjct: 175 AKMGARMPKGLILYGPPGTGKTLMAKAIAKEAGVAFFSASGSDFVQMYVGVGASRVRDIF 234

Query: 98  ALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME--DFQLDLMVGEGPSARSVKINLSRFT 155
                  ++ V+FIDEI  +     +    + +  D  L+ ++ E    +  +       
Sbjct: 235 KEARK-HEKAVIFIDEIDAIGKKRSQNAAQSNDEKDQTLNALLTEMSGFKDDEG----II 289

Query: 156 LIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAM 213
           +IAAT R+ +L + L    RF   I + + ++   ++I++   +   ++    A      
Sbjct: 290 VIAATNRLDMLDDALLRPGRFDRHIEIGYPDLAARESIIKLHLRNKPISSEISAKELAKQ 349

Query: 214 RSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL-----RLAIDKMGFDQLDLRY 267
               T  +    L      A       I     +AA       +   D+    ++D + 
Sbjct: 350 TVFFTGAMLENFLNEAAILAATKGQAIIDESHIEAAFYTVIAGKEKKDRSNISEIDRKI 408


>gi|145353045|ref|XP_001420841.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581076|gb|ABO99134.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 334

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 79/225 (35%), Gaps = 38/225 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+TL++  G  +A   ++  +     R+  + +++F GPPG GKT+   V+AR
Sbjct: 2   PWVEKYRPKTLDDLVGNDDAVDRMRTMV-----RSGFMPNLIFSGPPGCGKTSAIGVLAR 56

Query: 77  E-----LGVNFRSTSGPVIAKAGDLAALLTNLEDRDV---------LFIDEIHRLSIIVE 122
           E             +         +   +     + V         + +DE   ++   +
Sbjct: 57  ELLGDKYKEAVLEMNASDERGIDVVRNKIKMFAQKKVTLAPGRTKLVILDEADSMTTAAQ 116

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           + +   ME +                   +RF L   T+    +  P+Q R  I      
Sbjct: 117 QAMRRTMEIYSAT----------------TRFALACNTSE--KVIEPIQSRCAIVRFGKL 158

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
            + + LK ++    +   +    +    I   + G  R A   L+
Sbjct: 159 TDAQVLKRLMT-VVEAEKVTYVPKGLEAIVFTADGDMRQALNNLQ 202


>gi|15902813|ref|NP_358363.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae
           R6]
 gi|116516459|ref|YP_816247.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae
           D39]
 gi|15458364|gb|AAK99573.1| DNA-directed DNA polymerase III chain [Streptococcus pneumoniae R6]
 gi|116077035|gb|ABJ54755.1| DNA polymerase III, gamma and tau subunits [Streptococcus
           pneumoniae D39]
          Length = 551

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 53/296 (17%), Positives = 90/296 (30%), Gaps = 58/296 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     R +   +  GQ      LK  +E      E + H  LF GP G GKT++A++ A
Sbjct: 4   ALYRKYRSQNFSQLVGQEVVAKTLKQAVE-----QEKISHAYLFSGPRGTGKTSVAKIFA 58

Query: 76  RELGVNFRS------------------------TSGPVIAKAGDLAALLTN------LED 105
           + +    +                                   ++  +         L  
Sbjct: 59  KAMNCPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLAR 118

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
             V  IDE+H LS      L   +E+                         I ATT +  
Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPT------------------QNVVFILATTELHK 160

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           +   +  R       +    + +K  +    +   ++   EA   IA R+ G  R A  +
Sbjct: 161 IPATILSRVQRFEFKSIKTQD-IKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSI 219

Query: 226 LRRVRDFAEVAHAKTITREIADAALLRLAIDKM--GFDQLDL-RYLTMIARNFGGG 278
           L +     +     T   E     +   A+D       Q D+ + L+ +   F  G
Sbjct: 220 LDQALSLTQGNELTTAISEEITGTISLPALDDYVAALSQQDVPKALSCLNLLFDNG 275


>gi|237710325|ref|ZP_04540806.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. 9_1_42FAA]
 gi|237727844|ref|ZP_04558325.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|229434700|gb|EEO44777.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
 gi|229455787|gb|EEO61508.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. 9_1_42FAA]
          Length = 603

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 55/245 (22%), Positives = 78/245 (31%), Gaps = 54/245 (22%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T E   GQ      LK  I   K         LF GP G+GKTT A++ A+ +
Sbjct: 8   ARKYRPATFESVVGQRALTITLKNAIATGKLAHAY----LFCGPRGVGKTTCARIFAKTI 63

Query: 79  GV-------------------------NFRSTSGPVIAKAGDLAALLT------NLEDRD 107
                                      N             D+ +L+        +    
Sbjct: 64  NCQTPTAEGEACNQCESCLAFNEQRSYNIHELDAASNNSVEDIRSLIEQVRIPPQIGKYK 123

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           V  IDE+H LS          +E+          P   ++ I         ATT    + 
Sbjct: 124 VYIIDEVHMLSQAAFNAFLKTLEE----------PPHHAIFIL--------ATTEKHKIL 165

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             +  R  I    N   I+D    +Q  AKL  +    EA   IA ++ G  R A  +  
Sbjct: 166 PTILSRCQI-YDFNRIGIKDTIDHLQYVAKLEHINAEPEALTVIAQKADGGMRDALSIFD 224

Query: 228 RVRDF 232
           +V  F
Sbjct: 225 QVVSF 229


>gi|242062574|ref|XP_002452576.1| hypothetical protein SORBIDRAFT_04g028420 [Sorghum bicolor]
 gi|241932407|gb|EES05552.1| hypothetical protein SORBIDRAFT_04g028420 [Sorghum bicolor]
          Length = 543

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 50/196 (25%), Positives = 83/196 (42%), Gaps = 21/196 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA---------GDLAALLTNLEDRD 107
           VLF GPPG GKT+ A+V+A++ GV        V+            G + +L  +L +  
Sbjct: 314 VLFEGPPGTGKTSSARVIAKQAGVPLLYVPLEVVMSKYYGESERLLGSVFSLANDLPEGG 373

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           ++F+DE+   +I  +  ++ A     L +++ +       +    R  +IAAT R   L 
Sbjct: 374 IIFLDEVDSFAIARDSEMHEATRRI-LSVILRQIDGFEQDR----RVVVIAATNRKEDLD 428

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             L  RF   I     + +    I  + AK    +       E+   S  T  ++GR +R
Sbjct: 429 PALISRFDSIICFGLPDQQTRAEIAAQYAKHLTRS-------ELVQFSLATEEMSGRDIR 481

Query: 228 RVRDFAEVAHAKTITR 243
            V   AE   A  + R
Sbjct: 482 DVCQQAERHWASKLIR 497


>gi|195375032|ref|XP_002046307.1| GJ12823 [Drosophila virilis]
 gi|194153465|gb|EDW68649.1| GJ12823 [Drosophila virilis]
          Length = 331

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 52/283 (18%), Positives = 96/283 (33%), Gaps = 40/283 (14%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M +    +  +       I   RP   +E  G  +  + L VF     +      +++  
Sbjct: 1   MPEEMETVVVDKRNNLPWIEKYRPVKFDEIVGNEDTVARLSVF-----STQGNSPNIIIA 55

Query: 61  GPPGLGKTTLAQVVAR------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDR 106
           GPPG+GKTT  Q +AR            EL  +       V  K    A     L     
Sbjct: 56  GPPGVGKTTTIQCLARILLGDSYKDAVLELNASNERGIDVVRNKIKMFAQQKVTLPRGRH 115

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
            ++ +DE   ++   ++ L   ME +                 N +RF L   T+    +
Sbjct: 116 KIVILDEADSMTEGAQQSLRRTMEIYS----------------NTTRFALACNTSE--KI 157

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA-GRL 225
             P+Q R  +       + + L  +++   +L  L   ++    I   ++G  R A   L
Sbjct: 158 IEPIQSRCAMLRFTKLSDAQVLAKLIE-VCQLEKLKYDEDGLEAIVFTAQGDMRQALNNL 216

Query: 226 LRRVRDFAEVAHAKTI-TREIADAALLRLAIDKMGFDQLDLRY 267
               + F ++  A      +     LL+  +     + +   Y
Sbjct: 217 QSTAQGFGDITGANVFKVCDEPHPMLLQDMLQHCAANDIHKAY 259


>gi|332016496|gb|EGI57389.1| Replication factor C subunit 2 [Acromyrmex echinatior]
          Length = 355

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 80/225 (35%), Gaps = 38/225 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             I   RP+   +  G  +  S L VF     A+     +++  GPPG+GKTT    +AR
Sbjct: 41  PWIEKYRPQVFSDIVGNEDTVSRLSVF-----AQHGNTPNIIIAGPPGVGKTTTILCLAR 95

Query: 77  ------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIHRLSIIVE 122
                       EL  +       V  K    A    NL      ++ +DE   ++   +
Sbjct: 96  ILLGPAFKEAVLELNASNERGIDVVRNKIKMFAQKKVNLPKGKHKIIILDEADSMTDGAQ 155

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           + L   ME +           + + +  L       A      +  P+Q R  +      
Sbjct: 156 QALRRTMEIY-----------SHTTRFAL-------ACNNTEEIIEPIQSRCAMLRYGKL 197

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
            + E L  +++   +   ++ TD+    I   ++G  R A   L+
Sbjct: 198 TDAEVLAKVLE-VCEKENVSYTDDGMEAIIFTAQGDMRQALNNLQ 241


>gi|150004786|ref|YP_001299530.1| putative DNA polymerase III [Bacteroides vulgatus ATCC 8482]
 gi|149933210|gb|ABR39908.1| putative DNA polymerase III [Bacteroides vulgatus ATCC 8482]
          Length = 603

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 55/245 (22%), Positives = 78/245 (31%), Gaps = 54/245 (22%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T E   GQ      LK  I   K         LF GP G+GKTT A++ A+ +
Sbjct: 8   ARKYRPATFESVVGQHALTITLKNAIATGKLAHAY----LFCGPRGVGKTTCARIFAKTI 63

Query: 79  GV-------------------------NFRSTSGPVIAKAGDLAALLT------NLEDRD 107
                                      N             D+ +L+        +    
Sbjct: 64  NCQTPTAEGEACNQCESCLAFNEQRSYNIHELDAASNNSVEDIRSLIEQVRIPPQIGKYK 123

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           V  IDE+H LS          +E+          P   ++ I         ATT    + 
Sbjct: 124 VYIIDEVHMLSQAAFNAFLKTLEE----------PPHHAIFIL--------ATTEKHKIL 165

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             +  R  I    N   I+D    +Q  AKL  +    EA   IA ++ G  R A  +  
Sbjct: 166 PTILSRCQI-YDFNRIGIKDTIDHLQYVAKLEHINAEPEALTVIAQKADGGMRDALSIFD 224

Query: 228 RVRDF 232
           +V  F
Sbjct: 225 QVVSF 229


>gi|33241267|ref|NP_876209.1| DNA polymerase III gamma/tau subunit [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
 gi|33238797|gb|AAQ00862.1| DNA polymerase III gamma/tau subunit [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
          Length = 559

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 79/221 (35%), Gaps = 19/221 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  ++  GQ    + LK     A          LF GP G GKT+ A+++AR L    
Sbjct: 13  RPKRFDDLVGQDSIVATLKQ----ALISNRIAPAYLFCGPRGTGKTSSARILARSLNCQQ 68

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                       +L   +      D++ ID      +  +  ++E   +  ++      +
Sbjct: 69  SEKPTIAPCCQCNLCKEIGKGTALDIIEIDAASNTGVDNIRELIERSQFAPVQARWKVYV 128

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++   S+   + ATT    L   +  R           I  L
Sbjct: 129 IDECHMLSTAAFNALLKTLEEPPSQTVFVLATTDPQRLLQTILSRCQ-RFDFRRIPITSL 187

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
            + +   A    + +  E+   IA RS G  R A  LL ++
Sbjct: 188 TSHLTTIASKEKIEIDQESINLIAQRSEGGLRDAESLLDQL 228


>gi|319637641|ref|ZP_07992407.1| DNA polymerase III tau and gamma chains [Neisseria mucosa C102]
 gi|317400796|gb|EFV81451.1| DNA polymerase III tau and gamma chains [Neisseria mucosa C102]
          Length = 667

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 80/259 (30%), Gaps = 59/259 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T  +  GQ      L+  ++  +     L H  L  G  G+GKTT+A+++A+ L   
Sbjct: 11  RPKTFADLVGQEHVVKALRNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCE 65

Query: 82  FRS------------------------TSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                                ++  +L N +         V  I
Sbjct: 66  NAVHGEPCGQCESCTQIDSGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYII 125

Query: 112 DEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+H LS      +   +E+    +  ++      +     LSR                
Sbjct: 126 DEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPITVLSRCLQ------------- 172

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
               F +         E L  ++ R      +    +A   +   + G+ R A  LL + 
Sbjct: 173 ----FVLRNMTTQQVAEHLAHVLDR----ENVPYQPQALQLLGRAAAGSMRDALSLLDQA 224

Query: 230 RDFAEVAHAKTITREIADA 248
                   A+   R++  A
Sbjct: 225 IAMGSGKVAEQDVRQMIGA 243


>gi|265751132|ref|ZP_06087195.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263238028|gb|EEZ23478.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 603

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 55/245 (22%), Positives = 78/245 (31%), Gaps = 54/245 (22%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T E   GQ      LK  I   K         LF GP G+GKTT A++ A+ +
Sbjct: 8   ARKYRPATFESVVGQRALTITLKNAIATGKLAHAY----LFCGPRGVGKTTCARIFAKTI 63

Query: 79  GV-------------------------NFRSTSGPVIAKAGDLAALLT------NLEDRD 107
                                      N             D+ +L+        +    
Sbjct: 64  NCQTPTAEGEACNQCESCLAFNEQRSYNIHELDAASNNSVEDIRSLIEQVRIPPQIGKYK 123

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           V  IDE+H LS          +E+          P   ++ I         ATT    + 
Sbjct: 124 VYIIDEVHMLSQAAFNAFLKTLEE----------PPHHAIFIL--------ATTEKHKIL 165

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             +  R  I    N   I+D    +Q  AKL  +    EA   IA ++ G  R A  +  
Sbjct: 166 PTILSRCQI-YDFNRIGIKDTIDHLQYVAKLEHINAEPEALTVIAQKADGGMRDALSIFD 224

Query: 228 RVRDF 232
           +V  F
Sbjct: 225 QVVSF 229


>gi|254882691|ref|ZP_05255401.1| DNA polymerase III [Bacteroides sp. 4_3_47FAA]
 gi|319641967|ref|ZP_07996634.1| DNA polymerase III [Bacteroides sp. 3_1_40A]
 gi|254835484|gb|EET15793.1| DNA polymerase III [Bacteroides sp. 4_3_47FAA]
 gi|317386392|gb|EFV67304.1| DNA polymerase III [Bacteroides sp. 3_1_40A]
          Length = 603

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 55/245 (22%), Positives = 78/245 (31%), Gaps = 54/245 (22%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T E   GQ      LK  I   K         LF GP G+GKTT A++ A+ +
Sbjct: 8   ARKYRPATFESVVGQHALTITLKNAIATGKLAHAY----LFCGPRGVGKTTCARIFAKTI 63

Query: 79  GV-------------------------NFRSTSGPVIAKAGDLAALLT------NLEDRD 107
                                      N             D+ +L+        +    
Sbjct: 64  NCQTPTAEGEACNQCESCLAFNEQRSYNIHELDAASNNSVEDIRSLIEQVRIPPQIGKYK 123

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           V  IDE+H LS          +E+          P   ++ I         ATT    + 
Sbjct: 124 VYIIDEVHMLSQAAFNAFLKTLEE----------PPHHAIFIL--------ATTEKHKIL 165

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             +  R  I    N   I+D    +Q  AKL  +    EA   IA ++ G  R A  +  
Sbjct: 166 PTILSRCQI-YDFNRIGIKDTIDHLQYVAKLEHINAEPEALTVIAQKADGGMRDALSIFD 224

Query: 228 RVRDF 232
           +V  F
Sbjct: 225 QVVSF 229


>gi|299820909|ref|ZP_07052798.1| DNA polymerase III, gamma/tau subunit DnaX [Listeria grayi DSM
           20601]
 gi|299817930|gb|EFI85165.1| DNA polymerase III, gamma/tau subunit DnaX [Listeria grayi DSM
           20601]
          Length = 580

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 80/230 (34%), Gaps = 21/230 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RP+  ++  GQ      L    + A  + +     LF GP G GKT+ A+V A+
Sbjct: 5   ALYRVFRPQAFQDIVGQSHVTKTL----QNAIVQNKISHAYLFSGPRGTGKTSAAKVFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +     +   P      D    +T+  + DVL ID      +  +  I E++ Y     
Sbjct: 61  AINCERSTDGEPCNEC--DTCKGITDGSNPDVLEIDAASNNGVEEIRDIREKVKYAPTNS 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT    L   +  R         
Sbjct: 119 KYKVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQ-RFDFKR 177

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
              +D+   +        +   D+A   I   + G  R A  LL +V  F
Sbjct: 178 ITTQDITAHMASILDSESIQYEDKALQIIGRAAEGGLRDALSLLDQVISF 227


>gi|39972449|ref|XP_367615.1| conserved hypothetical protein [Magnaporthe oryzae 70-15]
 gi|145016723|gb|EDK01153.1| conserved hypothetical protein [Magnaporthe oryzae 70-15]
          Length = 358

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 44/242 (18%), Positives = 80/242 (33%), Gaps = 39/242 (16%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   +   RP  L++  G  E    LK+      A+   + HV+  G PG+GKTT    +
Sbjct: 33  ELPWVEKYRPVFLDDVVGNTETIERLKII-----AKDGNMPHVIISGMPGIGKTTSVLCL 87

Query: 75  ARE-----LGVNFRSTSGPVIAKAGDLAALLTNLEDRDV---------LFIDEIHRLSII 120
           AR+             +         +   +     + V         + +DE   ++  
Sbjct: 88  ARQLLGDSYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRHKLVILDEADSMTSG 147

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            ++ L   ME +                 N +RF    A  +   +  PLQ R  I    
Sbjct: 148 AQQALRRTMEIYS----------------NTTRFAF--ACNQSNKIIEPLQSRCAILRYA 189

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA-GRLLRRVRDFAEVAHAK 239
              + + +K ++Q   +   +  +D+    +   + G  R A   L      F  V+   
Sbjct: 190 RLTDAQVVKRLLQ-IIEAEKVEYSDDGLAALVFSAEGDMRQAINNLQSTYSGFGFVSGDN 248

Query: 240 TI 241
             
Sbjct: 249 VF 250


>gi|270292578|ref|ZP_06198789.1| DNA polymerase III [Streptococcus sp. M143]
 gi|270278557|gb|EFA24403.1| DNA polymerase III [Streptococcus sp. M143]
          Length = 552

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 54/296 (18%), Positives = 90/296 (30%), Gaps = 58/296 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     R +T  +  GQ      LK  +E      E + H  LF GP G GKT++A++ A
Sbjct: 4   ALYRKYRSQTFSQLVGQEVVAKTLKQAVE-----QEKISHAYLFSGPRGTGKTSVAKIFA 58

Query: 76  RELGVNFRS------------------------TSGPVIAKAGDLAALLTN------LED 105
           + +    +                                   ++  +         L  
Sbjct: 59  KAMNCPNQVDGEPCNHCYICQAVTEGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLAR 118

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
             V  IDE+H LS      L   +E+                         I ATT +  
Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPT------------------QNVVFILATTELHK 160

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           +   +  R       +    + +K  +    +   ++   EA   IA R+ G  R A  +
Sbjct: 161 IPATILSRVQRFEFKSIRTQD-IKEHIHHILEKENISSEPEAVEIIARRAEGGMRDALSI 219

Query: 226 LRRVRDFAEVAHAKTITREIADAALLRLAIDKM--GFDQLDL-RYLTMIARNFGGG 278
           L +     +     T   E     +   A+D       Q D+ + L  +   F  G
Sbjct: 220 LDQALSLTQGNELTTAISEEITGTISLSALDDYVAALSQQDVPKALDSLNLLFENG 275


>gi|260596869|ref|YP_003209440.1| DNA polymerase III subunits gamma and tau [Cronobacter turicensis
           z3032]
 gi|260216046|emb|CBA28758.1| DNA polymerase III subunit tau [Cronobacter turicensis z3032]
          Length = 667

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 90/249 (36%), Gaps = 25/249 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 33  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 86

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 87  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 146

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++   +    + ATT    L   +  R  +   L   + + +
Sbjct: 147 IDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRC-LQFHLRALDPDQI 205

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++      G+A    A   +A  + G+ R A  L     D A  +    +T +   A
Sbjct: 206 RQQLEHVLTQEGIAHEPRALQLLARAADGSLRDALSL----TDQAIASGDGQVTTQAVGA 261

Query: 249 ALLRLAIDK 257
            L  L  D+
Sbjct: 262 MLGTLDDDQ 270


>gi|241957153|ref|XP_002421296.1| replication factor C subunit, putative [Candida dubliniensis CD36]
 gi|223644640|emb|CAX40630.1| replication factor C subunit, putative [Candida dubliniensis CD36]
          Length = 364

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 74/236 (31%), Gaps = 32/236 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP++L + + Q      L   I++       L H+LF GPPG GKT+    +A+
Sbjct: 26  PWVEKYRPKSLSDVSSQEHTIKVLTQTIKSG-----NLPHMLFYGPPGTGKTSTILALAK 80

Query: 77  E------LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           E              +         +   + N     +         +   E++      
Sbjct: 81  ELYGPNLYKSRVLELNASDERGISIVREKIKNFARLTIS--------NPTKEDLANYPCP 132

Query: 131 DFQLDLMVGEGPSARSVKINLSR--------FTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
            +++ ++          +  L R           +     +  + +P+  R     R   
Sbjct: 133 PYKIIILDEADSMTYDAQSALRRTMENYAGITRFVLICNYITRIIDPITSRCS-KFRFKL 191

Query: 183 YEIEDLKTIVQRGAKLTGLAVT----DEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
              E+ +  ++   +   L       D+   E+   S G  R A   L+     +E
Sbjct: 192 LNNENAQLRLKYIGQQENLRFDKGQEDQVIQELLKISGGDLRKAITYLQSAAKLSE 247


>gi|194018066|ref|ZP_03056671.1| DNA polymerase III subunit gamma/tau [Bacillus pumilus ATCC 7061]
 gi|194010258|gb|EDW19835.1| DNA polymerase III subunit gamma/tau [Bacillus pumilus ATCC 7061]
          Length = 570

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 63/316 (19%), Positives = 115/316 (36%), Gaps = 42/316 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RP+  E+  GQ      L    + A  + +     LF GP G GKT+ A++ A+
Sbjct: 5   ALYRVFRPQVFEDVVGQEHITKTL----QNALLQKKFSHAYLFSGPRGTGKTSAAKIFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAAL--LTNLEDRDVLFID-----EIHRLSIIVEEILYPAM 129
            +         PV     +  A   +TN    DV+ ID      +  +  I +++ +   
Sbjct: 61  AVNCEK----SPVSEPCNECDACKGITNGSISDVIEIDAASNNGVDEIRDIRDKVKFAPS 116

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                  ++ E             ++++   +    I ATT    +   +  R       
Sbjct: 117 AVTYKVYIIDEVHMLSIGAFNALLKTLEEPPAHCIFILATTEPHKIPLTIISRCQ-RFDF 175

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
                +D+   +Q+      L V + +   IA  + G  R A  LL +   F+       
Sbjct: 176 KRITTKDIVGRMQKIVDAESLNVQEGSLEIIASAADGGMRDALSLLDQAISFSG------ 229

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDA---IE 297
               I DA L+  A+ +    QL                V ++T++  L + +DA   IE
Sbjct: 230 EQLTIDDALLITGAVSQQFISQLAEAIFDQNI------AVALDTLNELLQQGKDAAKLIE 283

Query: 298 DLIEPYMIQQGFIQRT 313
           D+I  +  +   + +T
Sbjct: 284 DMIFYF--RDMLLYKT 297


>gi|157691309|ref|YP_001485771.1| DNA polymerase III subunits gamma and tau [Bacillus pumilus
           SAFR-032]
 gi|157680067|gb|ABV61211.1| DNA-directed DNA polymerase III gamma/tau subunits [Bacillus
           pumilus SAFR-032]
          Length = 570

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 63/316 (19%), Positives = 115/316 (36%), Gaps = 42/316 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RP+  E+  GQ      L    + A  + +     LF GP G GKT+ A++ A+
Sbjct: 5   ALYRVFRPQVFEDVVGQEHITKTL----QNALLQKKFSHAYLFSGPRGTGKTSAAKIFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAAL--LTNLEDRDVLFID-----EIHRLSIIVEEILYPAM 129
            +         PV     +  A   +TN    DV+ ID      +  +  I +++ +   
Sbjct: 61  AVNCEK----SPVSEPCNECDACKGITNGSISDVIEIDAASNNGVDEIRDIRDKVKFAPS 116

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                  ++ E             ++++   +    I ATT    +   +  R       
Sbjct: 117 AVTYKVYIIDEVHMLSIGAFNALLKTLEEPPAHCIFILATTEPHKIPLTIISRCQ-RFDF 175

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
                +D+   +Q+      L V + +   IA  + G  R A  LL +   F+       
Sbjct: 176 KRITTKDIVGRMQKIVDAESLNVQEGSLEIIASAADGGMRDALSLLDQAISFSG------ 229

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDA---IE 297
               I DA L+  A+ +    QL                V ++T++  L + +DA   IE
Sbjct: 230 EQLTIDDALLITGAVSQQFISQLAEAIFDQNI------AVALDTLNELLQQGKDAAKLIE 283

Query: 298 DLIEPYMIQQGFIQRT 313
           D+I  +  +   + +T
Sbjct: 284 DMIFYF--RDMLLYKT 297


>gi|323303129|gb|EGA56931.1| Rfc4p [Saccharomyces cerevisiae FostersB]
          Length = 323

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 83/234 (35%), Gaps = 38/234 (16%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           +S+ +S +   +   RP+ L +  G  E    L+       A+   + H++  G PG+GK
Sbjct: 1   MSKTLSLQLPWVEKYRPQVLSDIVGNKETIDRLQQI-----AKDGNMPHMIISGMPGIGK 55

Query: 68  TTLAQVVARE-----LGVNFRSTSGPVIAKAGDLAALLTNLEDR---------DVLFIDE 113
           TT    +A E             +         +   + +   +          ++ +DE
Sbjct: 56  TTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDE 115

Query: 114 IHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
              ++   ++ L   ME +                 N +RF    A  +   +  PLQ R
Sbjct: 116 ADSMTAGAQQALRRTMELYS----------------NSTRFAF--ACNQSNKIIEPLQSR 157

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             I       + + LK ++Q   KL  +  T++    I   + G  R A   L+
Sbjct: 158 CAILRYSKLSDEDVLKRLLQ-IIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQ 210


>gi|212546239|ref|XP_002153273.1| DNA replication factor C subunit  Rfc4, putative [Penicillium
           marneffei ATCC 18224]
 gi|210064793|gb|EEA18888.1| DNA replication factor C subunit Rfc4, putative [Penicillium
           marneffei ATCC 18224]
          Length = 350

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 75/227 (33%), Gaps = 38/227 (16%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   +   RP  L++  G  E    LK+      A+   + HV+  G PG+GKTT    +
Sbjct: 27  ELPWVEKYRPVYLDDIVGNTETIERLKII-----AKDGNMPHVIISGMPGIGKTTSILCL 81

Query: 75  AR-----ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDV---------LFIDEIHRLSII 120
           AR              +         +   +     + V         + +DE   ++  
Sbjct: 82  ARQMLGDAYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRHKLVILDEADSMTPG 141

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            ++ L   ME +                   +RF    A  +   +  PLQ R  I    
Sbjct: 142 AQQALRRTMEIYSTT----------------TRFAF--ACNQSNKIIEPLQSRCAILRYS 183

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
              + + +K + Q   +   +  +++    +   + G  R A   L+
Sbjct: 184 RLTDGQVVKRLSQ-ICEAEKVDFSEDGIAALVFSAEGDMRQAINNLQ 229


>gi|6324478|ref|NP_014547.1| Rfc4p [Saccharomyces cerevisiae S288c]
 gi|730503|sp|P40339|RFC4_YEAST RecName: Full=Replication factor C subunit 4; Short=Replication
           factor C4; AltName: Full=Activator 1 37 kDa subunit
 gi|499704|gb|AAA34970.1| 37 kDa subunit [Saccharomyces cerevisiae]
 gi|600464|emb|CAA58185.1| orf 00923 [Saccharomyces cerevisiae]
 gi|841468|gb|AAC49063.1| Rfc4p [Saccharomyces cerevisiae]
 gi|1419942|emb|CAA99106.1| RFC4 [Saccharomyces cerevisiae]
 gi|151945540|gb|EDN63781.1| replication factor C subunit 4 [Saccharomyces cerevisiae YJM789]
 gi|207341418|gb|EDZ69479.1| YOL094Cp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|256271406|gb|EEU06467.1| Rfc4p [Saccharomyces cerevisiae JAY291]
 gi|259149392|emb|CAY86196.1| Rfc4p [Saccharomyces cerevisiae EC1118]
 gi|285814797|tpg|DAA10690.1| TPA: Rfc4p [Saccharomyces cerevisiae S288c]
 gi|323335629|gb|EGA76912.1| Rfc4p [Saccharomyces cerevisiae Vin13]
 gi|323346696|gb|EGA80980.1| Rfc4p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 323

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 83/234 (35%), Gaps = 38/234 (16%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           +S+ +S +   +   RP+ L +  G  E    L+       A+   + H++  G PG+GK
Sbjct: 1   MSKTLSLQLPWVEKYRPQVLSDIVGNKETIDRLQQI-----AKDGNMPHMIISGMPGIGK 55

Query: 68  TTLAQVVARE-----LGVNFRSTSGPVIAKAGDLAALLTNLEDR---------DVLFIDE 113
           TT    +A E             +         +   + +   +          ++ +DE
Sbjct: 56  TTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDE 115

Query: 114 IHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
              ++   ++ L   ME +                 N +RF    A  +   +  PLQ R
Sbjct: 116 ADSMTAGAQQALRRTMELYS----------------NSTRFAF--ACNQSNKIIEPLQSR 157

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             I       + + LK ++Q   KL  +  T++    I   + G  R A   L+
Sbjct: 158 CAILRYSKLSDEDVLKRLLQ-IIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQ 210


>gi|330502977|ref|YP_004379846.1| DNA polymerase III subunits gamma and tau [Pseudomonas mendocina
           NK-01]
 gi|328917263|gb|AEB58094.1| DNA polymerase III subunits gamma and tau [Pseudomonas mendocina
           NK-01]
          Length = 710

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 63/327 (19%), Positives = 97/327 (29%), Gaps = 65/327 (19%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPR+  E  GQ      LK  I A    ++ L H  LF G  G+GKTT+A+++A+ L   
Sbjct: 11  RPRSFREMVGQTHV---LKALINA--LDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNCE 65

Query: 82  FRSTS------------------------GPVIAKAGDLAALLTNLE------DRDVLFI 111
              +S                             K  D   LL N++         V  I
Sbjct: 66  TGISSTPCGTCSVCREIDEGRFVDLIEVDAASRTKVEDTRELLDNVQYSPSRGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSTSSFNALLKTLEE------------------PPPHVKFLLATTDPQKLPVTVL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L     E +   +        +   D+A   +   + G+ R A  L     D
Sbjct: 168 SRC-LQFSLKNMPPERVVEHLTHVLTAENVPFEDDALWLLGRAADGSMRDAMSL----TD 222

Query: 232 FAEVAHAKTITREIADAALLRLAIDK-----MGFDQLD-LRYLTMIARNFGGGPVGIETI 285
            A       +      A L  L   +         + D    +  +      GP     +
Sbjct: 223 QAIAFGEGKVLAADVRAMLGTLDHGQVYGVLHALIEGDARALIEAVRHLAEQGPDWNGVL 282

Query: 286 SAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           +  L+           P  +  G   R
Sbjct: 283 AEMLNVLHRVAIAQALPDAVDNGQGDR 309


>gi|325578015|ref|ZP_08148209.1| DNA polymerase III subunit gamma/tau [Haemophilus parainfluenzae
           ATCC 33392]
 gi|325160248|gb|EGC72376.1| DNA polymerase III subunit gamma/tau [Haemophilus parainfluenzae
           ATCC 33392]
          Length = 714

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 48/265 (18%), Positives = 83/265 (31%), Gaps = 57/265 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV-- 80
           RP+   E  GQ    + L    E            LF G  G+GKT++A++ A+ L    
Sbjct: 11  RPKNFSEVVGQSHVLTAL----ENGLKENRLHHAYLFSGTRGVGKTSIARLFAKGLNCVN 66

Query: 81  ----------------------NFRSTSGPVIAKAGDLAALLTNLEDRDVL------FID 112
                                 +          K  D   LL N++ + V+       ID
Sbjct: 67  GITADPCGECENCKAIEAGNFIDLIEIDAASRTKVEDTRELLDNVQYKPVVGRYKVYLID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS      L   +E+                         + ATT    L   +  
Sbjct: 127 EVHMLSRHSFNALLKTLEE------------------PPEYVKFLLATTDPQKLPITILS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R  +   L   +   +   + R      +     A  ++A  ++G+ R +  L     D 
Sbjct: 169 RC-MQFHLKVLDEPQISAHLNRVLTAENIPFDAPALDKLAKAAQGSIRDSLSL----TDQ 223

Query: 233 AEVAHAKTITREIADAALLRLAIDK 257
           A       ++ ++ +  L  L  D+
Sbjct: 224 AIAMGNGKVSTDVVNTMLGLLDEDQ 248


>gi|323331653|gb|EGA73067.1| Rfc4p [Saccharomyces cerevisiae AWRI796]
          Length = 264

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 83/234 (35%), Gaps = 38/234 (16%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           +S+ +S +   +   RP+ L +  G  E    L+       A+   + H++  G PG+GK
Sbjct: 1   MSKTLSLQLPWVEKYRPQVLSDIVGNKETIDRLQQI-----AKDGNMPHMIISGMPGIGK 55

Query: 68  TTLAQVVARE-----LGVNFRSTSGPVIAKAGDLAALLTNLEDR---------DVLFIDE 113
           TT    +A E             +         +   + +   +          ++ +DE
Sbjct: 56  TTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDE 115

Query: 114 IHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
              ++   ++ L   ME +                 N +RF    A  +   +  PLQ R
Sbjct: 116 ADSMTAGAQQALRRTMELYS----------------NSTRFAF--ACNQSNKIIEPLQSR 157

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             I       + + LK ++Q   KL  +  T++    I   + G  R A   L+
Sbjct: 158 CAILRYSKLSDEDVLKRLLQ-IIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQ 210


>gi|320169797|gb|EFW46696.1| replication factor C subunit 4 [Capsaspora owczarzaki ATCC 30864]
          Length = 347

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 73/229 (31%), Gaps = 42/229 (18%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RPRT++E   Q E  + LK  + +         H+LF GPPG GKT+    +AR
Sbjct: 24  PWVEKYRPRTVDEVAFQDEVVAVLKKSLTS-----NDFPHLLFYGPPGTGKTSTILAIAR 78

Query: 77  E------LGVNFRSTSGPVIAKAGDLAALLTNLEDR------------DVLFIDEIHRLS 118
           +      +       +         +   +  L                ++ +DE   ++
Sbjct: 79  QMFGPELMKTRILELNASDERGISVVREKVKTLHQSLRLKWGYPCPPFKIIILDEADSMT 138

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
              +  L   ME +                   +RF        V  +  PL  R     
Sbjct: 139 ADAQSALRRMMETYSKT----------------TRF--CLICNYVSRIIEPLASRCA-KF 179

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
           R    +   L   +       GL +   A  ++   S G  R A  L++
Sbjct: 180 RFKPLDAGILTEKLTAIGDKEGLQIDASAINQLTAASGGDMRRAITLMQ 228


>gi|320094885|ref|ZP_08026621.1| DNA polymerase III, gamma/tau subunit DnaX [Actinomyces sp. oral
           taxon 178 str. F0338]
 gi|319978181|gb|EFW09788.1| DNA polymerase III, gamma/tau subunit DnaX [Actinomyces sp. oral
           taxon 178 str. F0338]
          Length = 407

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 60/172 (34%), Gaps = 26/172 (15%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
              RP T +E  GQ      LK  + A +         LF GP G GKTT A+++AR L 
Sbjct: 3   RRYRPDTFDEVIGQEHVTEPLKAALRANRVTHAY----LFSGPRGCGKTTSARILARCLN 58

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDR----DVLFIDEIHRLSIIVEEILY------PAM 129
                  GP  A  G  A+            DV+ ID      +     L       P  
Sbjct: 59  C----AQGPTDAPCGQCASCKELATGGSGSLDVVEIDAASHGGVDDARDLRERATFAPVR 114

Query: 130 EDFQLDLMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           + +++ ++         G     + V+        + ATT    +   ++ R
Sbjct: 115 DRYKIFIIDEAHMVTNQGFNALLKLVEEPPEHVKFVFATTEPERVIGTIRSR 166


>gi|312114329|ref|YP_004011925.1| DNA polymerase III subunits gamma and tau [Rhodomicrobium vannielii
           ATCC 17100]
 gi|311219458|gb|ADP70826.1| DNA polymerase III, subunits gamma and tau [Rhodomicrobium
           vannielii ATCC 17100]
          Length = 574

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 50/262 (19%), Positives = 76/262 (29%), Gaps = 58/262 (22%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           +S             RP+TL++  GQ      L+      +         +  G  G+GK
Sbjct: 15  VSGKAQSYLVLARKYRPQTLDDLIGQDILVRTLRNAFAMDRIAQAY----MLTGVRGVGK 70

Query: 68  TTLAQVVARELGVNFR-----------------------------STSGPVIAKAGDLAA 98
           TT A+++AR L                                             D+  
Sbjct: 71  TTTARILARALNYERDGLPDRPSLDIAELGRHCQAIMDSRHVDVLEMDAASNTGIDDIRE 130

Query: 99  LLTNLEDRD------VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152
           ++  +  +       V  IDE+H LS      L   +E+                     
Sbjct: 131 IIEAVRYKPAAARYRVFIIDEVHMLSKSAFNGLLKTLEE------------------PPP 172

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIA 212
               I ATT +  +   +  R      L   E E L     R  +  G A  D A   IA
Sbjct: 173 HVKFIFATTEIRKVPVTILSRCQ-RFDLRRVEPEVLSAHFARILEKEGYAADDSALALIA 231

Query: 213 MRSRGTPRIAGRLLRRVRDFAE 234
             + G+ R    LL +    AE
Sbjct: 232 RAAEGSVRDGLSLLDQALTMAE 253


>gi|300707639|ref|XP_002996019.1| hypothetical protein NCER_100948 [Nosema ceranae BRL01]
 gi|239605277|gb|EEQ82348.1| hypothetical protein NCER_100948 [Nosema ceranae BRL01]
          Length = 305

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 83/224 (37%), Gaps = 34/224 (15%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           D  ++  RP+ LE   G V+    LK  ++       ++ H+LF GPPG GKT+ A++ A
Sbjct: 2   DLLVNKYRPKDLESVIGNVDTLETLKCILK-----DHSMPHLLFTGPPGTGKTSSAKIFA 56

Query: 76  RE---LGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEIL 125
            +           +         +  L+ +   +        ++ +DE   ++   ++ +
Sbjct: 57  FQLLGSKEGILELNASDDRGIDTVRTLIKDFAMKKILNVPFKIIILDECDSMTTAAQQAM 116

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
              ME +                   S    I        +  P+Q R  +       E 
Sbjct: 117 RRIMEIYS------------------SECKFILICNDFSKIFEPIQSRCAVLRFDKI-ES 157

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           + +++ +Q+  +   + +TDEA   I     G  R +  +L+  
Sbjct: 158 KVIESCLQKIVQAEHMNITDEALSFIIYICDGDIRQSLNILQAC 201


>gi|224536875|ref|ZP_03677414.1| hypothetical protein BACCELL_01751 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521499|gb|EEF90604.1| hypothetical protein BACCELL_01751 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 615

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 76/228 (33%), Gaps = 20/228 (8%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T E   GQ    + LK  I   K         LF GP G+GKTT A++ A+ +
Sbjct: 8   ARKYRPTTFESVVGQRALTTTLKNAIATGKLAHAY----LFCGPRGVGKTTCARIFAKTI 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL-----YPAMEDFQ 133
                +  G    +     A        ++  +D     S+     L      P      
Sbjct: 64  NCMTPTADGEACNQCESCTA-FNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKY 122

Query: 134 LDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
              ++ E             ++++        I ATT    +   +  R  I    N   
Sbjct: 123 KVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQI-YDFNRIG 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           +ED    +   A   G+    EA   IA+++ G  R A  +  +V  F
Sbjct: 182 VEDTVAHLAYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSF 229


>gi|190407255|gb|EDV10522.1| replication factor C subunit 4 [Saccharomyces cerevisiae RM11-1a]
          Length = 323

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 83/234 (35%), Gaps = 38/234 (16%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           +S+ +S +   +   RP+ L +  G  E    L+       A+   + H++  G PG+GK
Sbjct: 1   MSKTLSLQLPWVEKYRPQVLSDIVGNKETIDRLQQI-----AKDGNMPHMIISGMPGIGK 55

Query: 68  TTLAQVVARE-----LGVNFRSTSGPVIAKAGDLAALLTNLEDR---------DVLFIDE 113
           TT    +A E             +         +   + +   +          ++ +DE
Sbjct: 56  TTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDE 115

Query: 114 IHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
              ++   ++ L   ME +                 N +RF    A  +   +  PLQ R
Sbjct: 116 ADSMTAGAQQALRRTMELYS----------------NSTRFAF--ACNQSNKIIEPLQSR 157

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             I       + + LK ++Q   KL  +  T++    I   + G  R A   L+
Sbjct: 158 CAILRYSKLSDEDVLKRLLQ-IIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQ 210


>gi|304437633|ref|ZP_07397587.1| exopolyphosphatase [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304369376|gb|EFM23047.1| exopolyphosphatase [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 613

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 89/247 (36%), Gaps = 25/247 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP    +  GQ      L   + + +         LF GP G GKT+ A+++AR L    
Sbjct: 11  RPERFADLVGQEHISRTLSRAVTSGQISHAY----LFTGPRGTGKTSTAKILARALNCAE 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
             T  P      D    +++    DV  ID      I  +  + E + +   E      +
Sbjct: 67  GPTLTP--CGICDSCRSISDGSSMDVFEIDAASNRGIDEIRDLRESVKFAPTEGHYKIYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++    R   I ATT    +   +Q R       +   + ++
Sbjct: 125 IDEVHMLTTEAFNALLKTLEEPPERVIFILATTEPHKVPATIQSRCQ-RYDFHRITVTEI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  +    K + +A  ++A   IA ++ G  R A  +L +    AE     T+T E    
Sbjct: 184 RDRLIYVCKESDIAAEEDALGIIAEQADGGMRDALSILDQCMALAE----GTLTAERVQE 239

Query: 249 ALLRLAI 255
            L  +  
Sbjct: 240 TLGLVGR 246


>gi|225181171|ref|ZP_03734617.1| Sigma 54 interacting domain protein [Dethiobacter alkaliphilus AHT
           1]
 gi|225168140|gb|EEG76945.1| Sigma 54 interacting domain protein [Dethiobacter alkaliphilus AHT
           1]
          Length = 648

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 57/278 (20%), Positives = 90/278 (32%), Gaps = 57/278 (20%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           + + +LRP++L+E  GQ      L      AK  +    H++  GPPG+GKTT A++   
Sbjct: 163 SAMDILRPQSLDEIVGQEAGVQAL-----MAKLASPYPQHMIIYGPPGVGKTTAARLALE 217

Query: 77  ELG----------------------VNFRSTSGPVIAKAGD------------------L 96
                                     + R T+ P++    D                   
Sbjct: 218 AAKKLKQSAFHAEAPFVEVDGTTLRWDPRETTNPLLGSVHDPIYQGAKRDLVDGSVPEPK 277

Query: 97  AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSR--- 153
             L+T      +LFIDEI  L + ++  L   +ED  +        S+ S      R   
Sbjct: 278 PGLVTEAHSG-ILFIDEIGELDLHLQSKLLKVLEDKNVKFDSAYYDSSDSQVPQYIRKLF 336

Query: 154 -------FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDE 206
                  F LI ATT      NP        +         ++ I    A      +   
Sbjct: 337 EEGAPADFVLIGATTCAPEEINPALRSRCTSVFFEPLTSAHIEEIAAGAAVKLEAKLEPG 396

Query: 207 AACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            A  I+  +    R A  L+      A    A++   E
Sbjct: 397 VARTISEYTTE-GRQAVNLVSDAFGLALYRQAESDNEE 433


>gi|218132111|ref|ZP_03460915.1| hypothetical protein BACEGG_03739 [Bacteroides eggerthii DSM 20697]
 gi|217985761|gb|EEC52102.1| hypothetical protein BACEGG_03739 [Bacteroides eggerthii DSM 20697]
          Length = 607

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 76/228 (33%), Gaps = 20/228 (8%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T E   GQ    + LK  I   K         LF GP G+GKTT A++ A+ +
Sbjct: 8   ARKYRPSTFESVVGQHALTTTLKNAIATNKLAHAY----LFCGPRGVGKTTCARIFAKTI 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL-----YPAMEDFQ 133
                +  G    +     A        ++  +D     S+     L      P      
Sbjct: 64  NCMSPTAEGEACNQCESCTA-FNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKY 122

Query: 134 LDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
              ++ E             ++++        I ATT    +   +  R  I    N   
Sbjct: 123 KVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQI-YDFNRIS 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           +ED    +   A   G+    EA   IA+++ G  R A  +  +V  F
Sbjct: 182 VEDTVAHLAYVASKEGITAEPEALNIIALKADGGMRDALSIFDQVVSF 229


>gi|321261085|ref|XP_003195262.1| subunit of heteropentameric Replication factor C (RF-C); Rfc3p
           [Cryptococcus gattii WM276]
 gi|317461735|gb|ADV23475.1| Subunit of heteropentameric Replication factor C (RF-C), putative;
           Rfc3p [Cryptococcus gattii WM276]
          Length = 347

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 75/227 (33%), Gaps = 38/227 (16%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   +   RP  L++  G  +    LKV  E        L H++  G PG+GKTT    +
Sbjct: 25  EMPWVEKYRPVLLDDIVGNSDTVERLKVIAE-----DGNLPHIIISGMPGIGKTTSIHCL 79

Query: 75  AR------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIHRLSII 120
           A             EL  +       V  K    A     L      ++ +DE   ++  
Sbjct: 80  AHALLGEAYKEGVLELNASDERGIDVVRNKIKSFAQRKVTLPPGRHKIIILDEADSMTAG 139

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            ++ L   ME +                 N +RF    A      +  P+Q R  I    
Sbjct: 140 AQQALRRTMEIYS----------------NTTRF--ALACNMSNKIIEPIQSRCAILRYS 181

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
              + E LK  ++    +  +   DE    +   + G  R A   L+
Sbjct: 182 KLNDAEVLKR-LKEICDMESVKYNDEGLAALIFTAEGDMRQAINNLQ 227


>gi|310639621|ref|YP_003944379.1| DNA polymerase iii, subunits gamma and tau [Paenibacillus polymyxa
           SC2]
 gi|309244571|gb|ADO54138.1| DNA polymerase III, subunits gamma and tau [Paenibacillus polymyxa
           SC2]
          Length = 590

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 46/270 (17%), Positives = 91/270 (33%), Gaps = 26/270 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  ++  GQ      L+  I   +         LF GP G GKT+ A+++A+ +    
Sbjct: 18  RPQAFKDMVGQQHIIQTLQNAIRENRTSHAY----LFSGPRGTGKTSAAKILAKAINCEH 73

Query: 83  RSTSGPVIAKAGDLAAL--LTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLD 135
               GP      +  A   +T     DV  ID      +  +  + +++ Y   E     
Sbjct: 74  ----GPAPEPCNECEACKRITAGAVMDVQEIDAASNRGVEEIRDLRDKVKYAPTEVRHKV 129

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             ++++        I ATT    +   +  R           +E
Sbjct: 130 YIIDEVHMLTTEAFNALLKTLEEPPPHVMFILATTEPHRIPATIISRCQ-RFDFRRVSLE 188

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +    +    +   +    +A   IA  S G  R A  +L ++  F +         ++ 
Sbjct: 189 EQTERLDLICQQENIQADLDALQYIARLSDGGMRDAVSVLDQISSFTDGRVTYQQVLDMT 248

Query: 247 -DAALLRLAIDKMGFDQLDLRYLTMIARNF 275
              A  +     +   + D+  +  +  NF
Sbjct: 249 GGIASEQFGKLALALLKEDVGTVLQLIENF 278


>gi|257066283|ref|YP_003152539.1| DNA polymerase III, subunits gamma and tau [Anaerococcus prevotii
           DSM 20548]
 gi|256798163|gb|ACV28818.1| DNA polymerase III, subunits gamma and tau [Anaerococcus prevotii
           DSM 20548]
          Length = 626

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 51/255 (20%), Positives = 95/255 (37%), Gaps = 32/255 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T +E  GQ    + LK      + +     H  +F G  G GKTT A++ A+ +   
Sbjct: 10  RPKTFDEVLGQDRVVNVLK-----NQVKNNNFSHAYIFAGERGCGKTTCAKIFAKAINCL 64

Query: 82  FRSTSGPVIA----KAGDLAALLTNLEDRDVLFIDEIHR-----LSIIVEEILYPAMEDF 132
                 P +     KA D  + +      D++ +D         +  + + ++YP  +  
Sbjct: 65  HPVDGSPCLECENCKAIDDESTI------DIIEMDAASNRRIDDIRNLKDNVIYPPNKLK 118

Query: 133 QLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
               ++ E             + ++   S    I ATT +  + N +  R       N  
Sbjct: 119 YKVYIIDEAHMITREAFNALLKIMEEPPSHLVFILATTEIDNIPNTILSR-AQNFEFNKI 177

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           E   +K  +    K   + + +EA   I  +++G  R A  +L +V  + +    K    
Sbjct: 178 EKGKIKEQISIILKDKDIEMENEAIDLIIRKAKGAMRDALSILDQVLSY-DTKSYKLADV 236

Query: 244 EIADAALLRLAIDKM 258
           E     +    IDK+
Sbjct: 237 ENLLGVVDFYDIDKL 251


>gi|68470308|ref|XP_720658.1| hypothetical protein CaO19.11695 [Candida albicans SC5314]
 gi|68470569|ref|XP_720530.1| hypothetical protein CaO19.4219 [Candida albicans SC5314]
 gi|40362746|gb|AAR84642.1| AAA ATPase [Candida albicans]
 gi|46442402|gb|EAL01691.1| hypothetical protein CaO19.4219 [Candida albicans SC5314]
 gi|46442537|gb|EAL01825.1| hypothetical protein CaO19.11695 [Candida albicans SC5314]
          Length = 827

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 87/223 (39%), Gaps = 15/223 (6%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLED 105
           E    VL  GPPG GKTT+A  +A EL V F + S P +           L  +    + 
Sbjct: 225 EPPRGVLLYGPPGCGKTTIANALAGELKVPFINISAPSVVSGMSGESEKKLREIFEEAKQ 284

Query: 106 --RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
               ++F+DEI  ++   +      ME   +  ++         K       +I AT R 
Sbjct: 285 IAPCLIFMDEIDAITPKRDGGAQREMEKRIVAQLLTLMDELTLEKTGGKPVVVIGATNRP 344

Query: 164 GLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRI 221
             L + L+   RF   I LN    E   +I++  A    + + +         S+ TP  
Sbjct: 345 DSLDSALRRAGRFDREICLNVPNEEQRISILK--AMTKNIKLENGEHFNYRELSKLTPGY 402

Query: 222 AGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLD 264
            G  L+ +   A ++  K I   +++   L+     +  D +D
Sbjct: 403 VGADLKSLVTAAGISAIKRIFETMSE---LQEESHSVKDDSMD 442



 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 72/233 (30%), Gaps = 20/233 (8%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLT 101
           K    A   VL  GPPG GKT LA+ VA E   NF S  GP +           +  +  
Sbjct: 550 KVGIAAPAGVLMWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESEKAVRQVFQ 609

Query: 102 NLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA 159
                   ++F DE+  L    +  +  +       L+            +     +I A
Sbjct: 610 RARASTPCIIFFDELDALVPRRDTSMSESSSRVVNTLLTELDGLN-----DRKGVFVIGA 664

Query: 160 TTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQ---RGAKLTGLAVTDEAACEIAMR 214
           T R  ++   +    R    + +     E+   I++   R +     A  D  A     R
Sbjct: 665 TNRPDMIDPAMLRPGRLDKTLYIELPTPEERLEILKTLVRTSNSPLHANVDLNAISRDSR 724

Query: 215 SRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRY 267
                      L  V++    A  K   +      L      +    + D+  
Sbjct: 725 CGNFSGADLSSL--VKEAGVWALKKRFFQNQKIQELDSSGFYEDSIGEDDISI 775


>gi|241760334|ref|ZP_04758429.1| DNA polymerase III subunit tau [Neisseria flavescens SK114]
 gi|241319212|gb|EER55690.1| DNA polymerase III subunit tau [Neisseria flavescens SK114]
          Length = 666

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 80/259 (30%), Gaps = 59/259 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T  +  GQ      L+  ++  +     L H  L  G  G+GKTT+A+++A+ L   
Sbjct: 11  RPKTFADLVGQEHVVKALRNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCE 65

Query: 82  FRS------------------------TSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                                ++  +L N +         V  I
Sbjct: 66  NAVHGEPCGQCESCTQIDSGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYII 125

Query: 112 DEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+H LS      +   +E+    +  ++      +     LSR                
Sbjct: 126 DEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPITVLSRCLQ------------- 172

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
               F +         E L  ++ R      +    +A   +   + G+ R A  LL + 
Sbjct: 173 ----FVLRNMTTQQVAEHLAHVLDR----ENVPYQPQALQLLGRAAAGSMRDALSLLDQA 224

Query: 230 RDFAEVAHAKTITREIADA 248
                   A+   R++  A
Sbjct: 225 IAMGSGKVAEQDVRQMIGA 243


>gi|237749102|ref|ZP_04579582.1| DNA polymerase III subunit gamma [Oxalobacter formigenes OXCC13]
 gi|229380464|gb|EEO30555.1| DNA polymerase III subunit gamma [Oxalobacter formigenes OXCC13]
          Length = 604

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 51/265 (19%), Positives = 96/265 (36%), Gaps = 29/265 (10%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARE 77
               RP+  E   GQ      L   +E+ +     L H  LF G  G+GKTTL++++A+ 
Sbjct: 7   ARKYRPKNFENIVGQDHVVRALSHALESQR-----LHHAYLFTGTRGIGKTTLSRILAKS 61

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAME 130
           L      T+ P     G   A      DR V +++        I  +  ++E+ +Y    
Sbjct: 62  LNCEKGITASP----CGICEACKAIDSDRFVDYVEMDAASNRGIADMLQLLEQAVYAPTA 117

Query: 131 DFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
                 M+ E             ++++        I ATT    +   +  R  +   L 
Sbjct: 118 ARFKVYMIDEVHMLTSQAFNAMLKTLEEPPEYVKFILATTDPQKIPVTVLSRC-LQFNLK 176

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
              +  +   + R  +L  +     A   +A  ++G+ R A  L  +   +         
Sbjct: 177 QMPVSHIVDHLSRILELENIPFEKPALRLLAQGAQGSMRDALSLADQAIAYTAGHVTDEA 236

Query: 242 TREIADAALLRLAIDKMGFDQLDLR 266
            +++   AL +  + ++  D L  R
Sbjct: 237 VQDMLG-ALDQTYLIRL-LDHLANR 259


>gi|327183692|gb|AEA32139.1| recombination factor protein RarA [Lactobacillus amylovorus GRL
           1118]
          Length = 342

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 47/237 (19%), Positives = 78/237 (32%), Gaps = 51/237 (21%)

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSR---FTLIAATT 161
           D +FIDEIHR +   ++     +E   + L+    E PS       LSR   F L + +T
Sbjct: 18  DFVFIDEIHRFNKAQQDAFLSFVERGSITLIGATTENPSFEVNSALLSRAKVFVLHSLST 77

Query: 162 --RVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTP 219
              + LL N + D  G P                       + ++D+    I   S G  
Sbjct: 78  DDIIHLLKNAINDPAGFPG--------------------LDVQISDKNLRMITEFSNGDA 117

Query: 220 RIAGRLLRRVRDFAEVAHAKTITREIADAAL---LRLAIDKMGFDQLDLRYLTMIARNFG 276
           R +   L       +    + +  E     L     L  DK G +   L           
Sbjct: 118 RSSLNTLENAVLNGKKTGKRVVVDESILQQLINTKSLRYDKKGNEHYSL----------- 166

Query: 277 GGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLLMPIAWQHLGIDI 331
                   I+A     R++  D    ++ +       P    R L+  A +++G+  
Sbjct: 167 --------IAALHKSMRNSDVDAAVYWVNRMLDGGEDPLYIARRLVRFASENVGLAD 215


>gi|255522401|ref|ZP_05389638.1| recombination factor protein RarA [Listeria monocytogenes FSL
           J1-175]
          Length = 325

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 85/222 (38%), Gaps = 34/222 (15%)

Query: 116 RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
           RL    ++ L P +E   + +++G   S   + IN +    I + T++  L     +   
Sbjct: 1   RLDKAKQDFLLPLLESGAI-ILIGATTSNPYIAINPA----IRSRTQIFELKPLTVEDIM 55

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
           I        ++   +  +RG     + + + A    A  S G  R A   L      +E 
Sbjct: 56  I-------TMDRALSDKERGLGNYDVEIDEVAKKHFATASNGDVRSALNALELAVISSEP 108

Query: 236 AHAKT--ITREIADAALLRL--AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
                  IT ++A+  L +   A DK G    D+  L+   ++  G  V           
Sbjct: 109 NEDGVIHITLDVAEECLQKKSLAHDKDGDAHYDV--LSAFQKSVRGSDV----------- 155

Query: 292 PRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
              A+  +    +I+ G +    R R+L+ +A++ +G+  P 
Sbjct: 156 -NAALHYMGR--LIEAGDLVSISR-RMLV-MAYEDIGLASPQ 192


>gi|261377458|ref|ZP_05982031.1| DNA polymerase III, subunit gamma and tau [Neisseria cinerea ATCC
           14685]
 gi|269146186|gb|EEZ72604.1| DNA polymerase III, subunit gamma and tau [Neisseria cinerea ATCC
           14685]
          Length = 722

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 49/303 (16%), Positives = 90/303 (29%), Gaps = 63/303 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T  +  GQ      L+  ++  +     L H  L  G  G+GKTT+A+++A+ L   
Sbjct: 11  RPKTFADLVGQEHVVKALRNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCE 65

Query: 82  FRS------------------------TSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                                ++  +L N +         V  I
Sbjct: 66  NAQHGEPCGVCESCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYII 125

Query: 112 DEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+H LS      +   +E+    +  ++      +     LSR                
Sbjct: 126 DEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNM------- 178

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
                           + +   +        +A    A   +   + G+ R A  LL + 
Sbjct: 179 --------------TSQQVADHLAHVLDSEKIAYEPAALQLLGRAAAGSMRDALSLLDQA 224

Query: 230 RDFAEVAHAKTITREIADAALLRLAIDKM-GFDQLDLRYLTMIARNFGGGPVGIETISAG 288
                 + A+   R++  A   +   + + G    D   L   A+      VG +     
Sbjct: 225 IAMGSGSVAEQDVRQMIGAVDKQYLYELLTGIINQDGEALLAKAQEMAACAVGFDN---A 281

Query: 289 LSE 291
           L E
Sbjct: 282 LGE 284


>gi|145551855|ref|XP_001461604.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124429439|emb|CAK94231.1| unnamed protein product [Paramecium tetraurelia]
          Length = 648

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 57/276 (20%), Positives = 103/276 (37%), Gaps = 33/276 (11%)

Query: 2   MDREGLLSRNVS--QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH--- 56
           MDR   + RN    QE+ +I    P    +  G  E    L+  +E  K   +  D    
Sbjct: 194 MDRFYNILRNNQSVQEERNI----PTRFNDVLGIDEFKEELEEIVEFLKNPKKYTDSGAK 249

Query: 57  ----VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA------KAGDLAALLTNLEDR 106
               +L VGPPG GKT LA+ +A E G  F   SG           A  +  +      +
Sbjct: 250 LPKGILLVGPPGTGKTLLARALAGEAGCAFFYKSGSEFDEMFVGVGASRVRDIFKAARAK 309

Query: 107 --DVLFIDEIHRL--SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTR 162
              ++FIDEI  +      ++   P      ++ ++ E    +  +       +I AT  
Sbjct: 310 APSIIFIDEIDSIGGRRRAQD---PGYSRDTINQILTEMDGFKQTES----VIVIGATNF 362

Query: 163 VGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPR 220
             +L   L+   RF   I +   +++  + I     +          A  +A ++ G   
Sbjct: 363 EQVLDPALKRPGRFDKMIHVPLPDVKGREQIFSYYLQKIKFDEKKVLANNLARQTSGFSG 422

Query: 221 IAGRLLRRVRDFAEVAHAK-TITREIADAALLRLAI 255
              + +  V     + + +   T E  + A+ R+++
Sbjct: 423 ADIQNMVNVAILNAIKYDRQIATTEDFEFAIDRISM 458


>gi|86608779|ref|YP_477541.1| DNA polymerase III, subunits gamma and tau [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86557321|gb|ABD02278.1| DNA polymerase III, subunits gamma and tau [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 779

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 82/234 (35%), Gaps = 21/234 (8%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
                 +      RP+   +  GQ      L   I   +         LF GP G GKT+
Sbjct: 2   ATAGNYEPLHLKYRPQRFADVVGQGAVVQTLANAIRLGRVA----PAYLFCGPRGTGKTS 57

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEI 124
            A+++A+ L      T  P         A+       DVL ID      +  +  ++E  
Sbjct: 58  SARILAKSLNCEQGPTPDP-CQACSQCRAITAGAS-LDVLEIDAASNTGVDNIRELIERA 115

Query: 125 LYPAMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
            +  +       ++ E             ++++    R   + ATT    +   +  R  
Sbjct: 116 QFAPVNSRYKVYVIDECHMLSNAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIVSRCQ 175

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
                    ++D+   + + A   G+ +T EA   +A  S+G  R A RLL ++
Sbjct: 176 -RFDFRRIPLDDMVAHLGKIAAQEGIPITPEALQLVAQLSQGGLRDAERLLDQL 228


>gi|297200751|ref|ZP_06918148.1| DNA polymerase III, subunits gamma and tau [Streptomyces sviceus
           ATCC 29083]
 gi|297147718|gb|EDY56355.2| DNA polymerase III, subunits gamma and tau [Streptomyces sviceus
           ATCC 29083]
          Length = 577

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 75/237 (31%), Gaps = 23/237 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP +  E  GQ      L+  +   +         LF GP G GKTT A+++AR
Sbjct: 75  ALYRRYRPESFAEVIGQEHVTDPLQQALRNNRVNHAY----LFSGPRGCGKTTSARILAR 130

Query: 77  ELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFIDEIHRLSII------VEEILYPA 128
            L      T  P        DLA         DV+ ID      +        +    PA
Sbjct: 131 CLNCEQGPTPTPCGTCQSCQDLA--RNGPGSIDVIEIDAASHGGVDDARELREKAFFGPA 188

Query: 129 MEDFQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
              +++ ++         G     + V+        I ATT    +   ++ R       
Sbjct: 189 SSRYKIYIIDEAHMVTSAGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSR-THHYPF 247

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                  L+  +        + V +     +    +G+ R +  ++ ++   A    
Sbjct: 248 RLVPPGTLREYLGEVCGKENIPVEEGVLPLVVRAGQGSVRDSMSVMDQLLAGAREEG 304


>gi|323454913|gb|EGB10782.1| hypothetical protein AURANDRAFT_71065 [Aureococcus anophagefferens]
          Length = 747

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 44/241 (18%), Positives = 76/241 (31%), Gaps = 41/241 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP +L+E     +  S L+  IEA K     L H L  GPPG GKT+     A+
Sbjct: 426 PWVEKYRPSSLDELVAHKDIISVLRRLIEADK-----LPHTLLYGPPGTGKTSTILAAAK 480

Query: 77  ------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-DVLFIDEIHRLSIIVEE 123
                       EL  +       V  +  + A           ++ +DE   ++   + 
Sbjct: 481 DMYGAGYKSMTLELNASDDRGIDVVRDQIKEFAGTRRLFSKGIKLIILDEADMMTKDAQF 540

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
            L   +E +                   +             +   LQ R     R    
Sbjct: 541 ALRRVIEKYT------------------ANARFCLICNYANKIIPALQSRC-TKFRFAPL 581

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
             + +   V    +   +A+  +A   +    +G  R    +L+     A VA+   +T 
Sbjct: 582 APDQIAGRVADIVRRENVAIGTKATDALLELGKGDMRRVLNVLQ----AAAVAYPGEVTY 637

Query: 244 E 244
           E
Sbjct: 638 E 638


>gi|256846388|ref|ZP_05551845.1| DNA polymerase III, subunits gamma and tau [Fusobacterium sp.
           3_1_36A2]
 gi|256718157|gb|EEU31713.1| DNA polymerase III, subunits gamma and tau [Fusobacterium sp.
           3_1_36A2]
          Length = 484

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 100/242 (41%), Gaps = 22/242 (9%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVAREL 78
              RP +  E +G+ E   +LK+ ++      +++ H  LF GP G+GKTT+A+++A+ +
Sbjct: 7   RKYRPSSFSEVSGENEIVKSLKLSLK-----NKSMAHAYLFSGPRGVGKTTIARLIAKGV 61

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQ 133
                  +G    +  +  A+       D++ ID      I  +  + E+I Y  +E  +
Sbjct: 62  NCLNLKENGEPCNECKNCKAINEG-RFSDLIEIDAASNRSIDEIRSLKEKINYQPVEGLK 120

Query: 134 LDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
              ++ E             ++++   +    I ATT +  +   +  R          +
Sbjct: 121 KVYIIDEAHMLTKEAFNALLKTLEEPPAHVMFILATTELEKILPTIISRCQ-RYDFKPLD 179

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +E++K  ++   K   L++TD+    I   S G+ R +  +L R+   A          E
Sbjct: 180 LEEMKAGLEHILKEENLSMTDDVYSVIYENSSGSMRDSISILERLIVTANGKEIDLKIAE 239

Query: 245 IA 246
             
Sbjct: 240 DT 241


>gi|198429463|ref|XP_002129985.1| PREDICTED: similar to predicted protein [Ciona intestinalis]
          Length = 356

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 79/247 (31%), Gaps = 45/247 (18%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+ +++   Q E  + L+  +  A      L ++LF GPPG GKT+    ++R
Sbjct: 33  PWVEKYRPKCVDDVAHQDEVVAVLRKSLTGAD-----LPNLLFYGPPGTGKTSTILALSR 87

Query: 77  -------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD--------VLFIDEIH 115
                        EL  +       +  K  + A L  N    D        ++ +DE  
Sbjct: 88  ELFGFQLMKERVLELNSSDERGINVIREKVKNFAQLTANSLREDGKKCPPYKIIILDEAD 147

Query: 116 RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
            ++   +E L   ME                     +RF        V  +  P+  R  
Sbjct: 148 SMTKAAQEALRRTMEKSSKT----------------TRF--CLICNYVTRIIPPIISRCS 189

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
              R      ED K  +    +  G+ ++ +A   +   S G  R A   L+        
Sbjct: 190 -QFRFKSLSTEDQKKRLWMVCEKEGVKISQDAMSCLVKCSEGDLRKAMTYLQTAHRLKGA 248

Query: 236 AHAKTIT 242
                  
Sbjct: 249 EGIDEKD 255


>gi|293364064|ref|ZP_06610800.1| DNA polymerase III, subunit gamma and tau [Mycoplasma alligatoris
           A21JP2]
 gi|292552554|gb|EFF41328.1| DNA polymerase III, subunit gamma and tau [Mycoplasma alligatoris
           A21JP2]
          Length = 827

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 40/214 (18%), Positives = 67/214 (31%), Gaps = 36/214 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP + +E  GQ      LK  I + K         +F GP G+GKT++A++ A 
Sbjct: 5   ALYRKYRPSSFDEVRGQEHIIVTLKNIISSRKIGHAY----VFSGPRGVGKTSVARIFAN 60

Query: 77  ELGV------------------------NFRSTSGPVIAKAGDLAALLTNL---EDRDVL 109
            L                             + S   + +  DL   + +L       + 
Sbjct: 61  VLNCMHDENITRACDDCFRQIKTSIDVVEMDAASNNGVDEIRDLKEKVEHLPTMGRYKIY 120

Query: 110 FIDEIHRLSIIVEEILYPAMED---FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
            IDE+H LS      L   +E+     + ++    P  +     LSR            +
Sbjct: 121 IIDEVHMLSKGAFNALLKTLEEPPAHAIFILATTDPQ-KIPLTILSRAQRFNFRRIPTNI 179

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
                +   +      YE   +  I +  A    
Sbjct: 180 LAKTLEDV-LEAEAINYEKNAISYIARLAAGGLR 212


>gi|242010739|ref|XP_002426116.1| Replication factor C subunit, putative [Pediculus humanus corporis]
 gi|212510163|gb|EEB13378.1| Replication factor C subunit, putative [Pediculus humanus corporis]
          Length = 338

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 80/225 (35%), Gaps = 38/225 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             I   RP T ++  G  +A   L     AA A    + ++L  GPPG+GKTT    +AR
Sbjct: 20  PWIEKYRPVTFKDVVGNDDAIRRL-----AAFAEVGNVPNILIAGPPGVGKTTTILCLAR 74

Query: 77  ------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIHRLSIIVE 122
                       EL  +       V  K    A     L      ++ +DE   ++   +
Sbjct: 75  ILLGPSFKEAVLELNASNDRGIDTVRNKIKMFAQQKVTLPKGKHKIIVLDEADSMTDGAQ 134

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           + L   ME +                   +RF    A      +  PLQ R  +      
Sbjct: 135 QALRRTMEMYSQT----------------TRFAF--ACNDSSKIIEPLQSRCAVLRFTKL 176

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
            + E LK ++Q   +   ++ T++    +   ++G  R A   L+
Sbjct: 177 KDEEILKKLLQ-ICESEQISYTNDGLEAVIFSAQGDLRQALNNLQ 220


>gi|163782796|ref|ZP_02177792.1| DNA polymerase III gamma subunit [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881917|gb|EDP75425.1| DNA polymerase III gamma subunit [Hydrogenivirga sp. 128-5-R1-1]
          Length = 456

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 66/343 (19%), Positives = 114/343 (33%), Gaps = 69/343 (20%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+   E  GQ      LK  ++  +         LF GP G+GKTT+A+++A+ L
Sbjct: 6   ARKYRPKFFREVVGQEVPVRILKNAVKNDRVSHAY----LFAGPRGVGKTTIARILAKSL 61

Query: 79  GV------------------------NFRSTSGPVIAKAGDLAALLTNL------EDRDV 108
                                     +             D+ AL   +          V
Sbjct: 62  NCLNPKEGEPCGECENCQEIDRGNFPDLIEMDAASNRGIDDIRALREAVSYTPIKGKFKV 121

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
             IDE H L+      L   +E+                     R   I  TT    +  
Sbjct: 122 YIIDEAHMLTKEAFNALLKTLEE------------------PPPRTVFILCTTEYEKILP 163

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            +  R    I       + +   ++   +  GL   +EA   IA  S G  R A  LL  
Sbjct: 164 TILSRCQRIIFGRV-SDDKVIDYLKDICEREGLECEEEALKSIAQASEGCMRDAASLL-- 220

Query: 229 VRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV-GIETIS- 286
             D A V     +T+E  ++ L  L+ +K+        ++ ++  +   G V  +  +  
Sbjct: 221 --DQASVIGEGKVTQEAVESFLGILSAEKV------REFIRLLLNSDTDGAVRWLNELYR 272

Query: 287 --AGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHL 327
               LS+  D +E+ I   ++ +    + P G +  P  ++  
Sbjct: 273 KGYNLSKFWDNLEEEIRRAILVRSL--KDPFGVVENPEDYEEF 313


>gi|52783877|ref|YP_089706.1| DNA polymerase III subunits gamma and tau [Bacillus licheniformis
           ATCC 14580]
 gi|163119173|ref|YP_077305.2| DNA polymerase III subunits gamma and tau [Bacillus licheniformis
           ATCC 14580]
 gi|319648542|ref|ZP_08002757.1| DnaX protein [Bacillus sp. BT1B_CT2]
 gi|52346379|gb|AAU39013.1| DnaX [Bacillus licheniformis ATCC 14580]
 gi|145902676|gb|AAU21667.2| DNA polymerase III (gamma and tau subunits) [Bacillus licheniformis
           ATCC 14580]
 gi|317389390|gb|EFV70202.1| DnaX protein [Bacillus sp. BT1B_CT2]
          Length = 566

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 84/233 (36%), Gaps = 25/233 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RP+  E+  GQ      L    + A  + +     LF GP G GKT+ A++ A+
Sbjct: 5   ALYRVFRPQLFEDVVGQEHITKTL----QNALLQKKFSHAYLFSGPRGTGKTSAAKLFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAAL--LTNLEDRDVLFID-----EIHRLSIIVEEILYPAM 129
            +         PV     + +A   +TN    DV+ ID      +  +  I +++ +   
Sbjct: 61  AVNCER----APVSEPCNECSACKGITNGSISDVIEIDAASNNGVDEIRDIRDKVKFAPS 116

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                  ++ E             ++++        I ATT    +   +  R       
Sbjct: 117 AVTYKVYIIDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLTIISRCQ-RFDF 175

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                + +   +++  +   L V D A   IA  + G  R A  LL +   F+
Sbjct: 176 KRITSQAIVGRMKKIVEAEQLKVQDGALDIIASAADGGMRDALSLLDQAVSFS 228


>gi|323705145|ref|ZP_08116721.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535571|gb|EGB25346.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 506

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 62/289 (21%), Positives = 98/289 (33%), Gaps = 27/289 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAA-------KARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  E    LK+ I+         +  A+    +LF GPPG GKT LA  +A E 
Sbjct: 78  TFRDVAGLDEVIDELKIIIDFINNTEKYDRMGAKIPKGILFYGPPGTGKTLLATALAGET 137

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
              F S SG           A  + AL    +     ++FIDEI  +          + +
Sbjct: 138 NSTFISASGSEFVEKYVGVGASRIRALFARAKKSTPSIIFIDEIDAVGSKRNND-NNSEK 196

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
           D  L+ ++ E     S         +I AT R+ +L   L    RF   I +    ++  
Sbjct: 197 DQTLNQLLVEMDGFNSNDG----IIVIGATNRLDMLDEALLRPGRFDRTIHIGNPNVKAR 252

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             I++   +   L                T      +       A + H + I RE  D 
Sbjct: 253 LEILKVHTRNKPLDTDISLDEIAKKTHGMTGAHLSSICNEAAILAVIRHKQRIGREEFDE 312

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
           A+ R+     G  + +   L    +       G   I   L+     +E
Sbjct: 313 AIERVVA---GLQKKNPEVLEKERKIAAHHEAGHAIIGKILN--SSTVE 356


>gi|296130956|ref|YP_003638206.1| DNA polymerase III, subunits gamma and tau [Cellulomonas flavigena
           DSM 20109]
 gi|296022771|gb|ADG76007.1| DNA polymerase III, subunits gamma and tau [Cellulomonas flavigena
           DSM 20109]
          Length = 878

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 40/173 (23%), Positives = 63/173 (36%), Gaps = 22/173 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP +  E  GQ    + L+  + + +A        LF GP G GKTT A+++AR
Sbjct: 4   ALYRRYRPESFAEVIGQDHVTAPLRQALRSGQANHAY----LFSGPRGCGKTTSARILAR 59

Query: 77  ELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PA 128
            L      T  P  V     +LA         DV+ ID      +     L       PA
Sbjct: 60  CLNCAEGPTDTPCGVCPSCVELA--RGGAGSLDVVEIDAASHGGVDDARELRERATFAPA 117

Query: 129 MEDFQLDLMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
            + +++ ++         G     + V+        I ATT    +   ++ R
Sbjct: 118 RDRYKVFILDEAHMVSPQGFNALLKIVEEPPPHVKFIFATTEPDKVIGTIRSR 170


>gi|260437834|ref|ZP_05791650.1| DNA polymerase III, gamma and tau subunit [Butyrivibrio crossotus
           DSM 2876]
 gi|292809859|gb|EFF69064.1| DNA polymerase III, gamma and tau subunit [Butyrivibrio crossotus
           DSM 2876]
          Length = 523

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 81/223 (36%), Gaps = 25/223 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP T  +  GQ      LK  IE+ +         LF G  G GKTT+A+++A+ +    
Sbjct: 11  RPDTFSDVKGQEHIVRTLKNQIESDRVGHAY----LFCGTRGTGKTTIAKILAKAVNCEH 66

Query: 83  RSTSGPVIAKAGDLA--ALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLD 135
                P     G+ A    + N    +V+ ID      +  +  I +E+ Y   E     
Sbjct: 67  PIDGSP----CGECAVCKAIANGSSLNVIEIDAASNNGVDNIRQIRDEVAYRPTEGRYKV 122

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             ++++   S    I ATT    +   +  R           ++
Sbjct: 123 YIIDEVHMLSIGAFNALLKTLEEPPSYVIFILATTEAHKIPVTIMSRCQRYDFKRI-SVD 181

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
            ++  ++      G    ++A   IA  + G  R A  LL + 
Sbjct: 182 TIEARLRELVDKEGALAEEKALRYIAKLADGAMRDALSLLDQC 224


>gi|256822248|ref|YP_003146211.1| DNA polymerase III subunits gamma and tau [Kangiella koreensis DSM
           16069]
 gi|256795787|gb|ACV26443.1| DNA polymerase III, subunits gamma and tau [Kangiella koreensis DSM
           16069]
          Length = 773

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 55/284 (19%), Positives = 88/284 (30%), Gaps = 66/284 (23%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+  +E  GQ      L   IE+ +     L H  LF G  G+GKTT+A+++++ L   
Sbjct: 11  RPKNFDELQGQEHVSRALVNAIESGR-----LHHAYLFTGTRGVGKTTIARILSKCLNCE 65

Query: 82  FR-------------------------STSGPVIAKAGDLAALLTNLEDRD------VLF 110
                                              K  D   LL N++ +       V  
Sbjct: 66  TNGLTSKPCGECGSCVEIDEGRFVDLIEVDAASRTKVDDTRELLENVQYKPTRGRYKVYL 125

Query: 111 IDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           IDE+H LS      L   +E+                         + ATT    L   +
Sbjct: 126 IDEVHMLSNSSFNALLKTLEE------------------PPEHVIFLLATTDPQKLPVTV 167

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
             R  +   L   E + +   +    +   +     A   I+  + G+ R A  LL    
Sbjct: 168 LSRC-LQFHLKHMEEQTISKHLAYILQQESIDFETPALELISRSAEGSMRDALSLL---- 222

Query: 231 DFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARN 274
           D A       +  E     L  +    M      ++ L  +A  
Sbjct: 223 DQAIAFGQGKVQEEDIRTMLGTIDHQFM------VKLLEALANK 260


>gi|168575523|ref|ZP_02721459.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae
           MLV-016]
 gi|183578398|gb|EDT98926.1| DNA polymerase III subunit gamma/tau [Streptococcus pneumoniae
           MLV-016]
          Length = 551

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 53/296 (17%), Positives = 90/296 (30%), Gaps = 58/296 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     R +   +  GQ      LK  +E      E + H  LF GP G GKT++A++ A
Sbjct: 4   ALYRKYRSQNFSQLVGQEVVAKTLKQAVE-----QEKISHAYLFSGPRGTGKTSVAKIFA 58

Query: 76  RELGVNFRS------------------------TSGPVIAKAGDLAALLTN------LED 105
           + +    +                                   ++  +         L  
Sbjct: 59  KAINCPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLAR 118

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
             V  IDE+H LS      L   +E+                         I ATT +  
Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPT------------------QNVVFILATTELHK 160

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           +   +  R       +    + +K  +    +   ++   EA   IA R+ G  R A  +
Sbjct: 161 IPATILSRVQRFEFKSIKTQD-IKEHLHYILEKENISSEPEAVEIIARRAEGGMRDALSI 219

Query: 226 LRRVRDFAEVAHAKTITREIADAALLRLAIDKM--GFDQLDL-RYLTMIARNFGGG 278
           L +     +     T   E     +   A+D       Q D+ + L+ +   F  G
Sbjct: 220 LDQALSLTQGNELTTAISEEITGTISLSALDDYVAALSQQDVPKALSCLNLLFDNG 275


>gi|121719320|ref|XP_001276359.1| DNA replication factor C subunit Rfc3, putative [Aspergillus
           clavatus NRRL 1]
 gi|119404557|gb|EAW14933.1| DNA replication factor C subunit Rfc3, putative [Aspergillus
           clavatus NRRL 1]
          Length = 395

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 76/226 (33%), Gaps = 13/226 (5%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
                   +   RP TL++ +G  +  + +  F+EA +     L H+L  GPPG GKT+ 
Sbjct: 40  EAQDNLPWVEKYRPNTLDDVSGHQDILTTINKFVEANR-----LPHLLLYGPPGTGKTST 94

Query: 71  AQVVAR------ELGVNFRSTSGPVIAKAGDLAALLTN-LEDRDVLFIDEIHRLSIIVEE 123
              +AR       +       +         +   +      + +  +         +  
Sbjct: 95  ILALARRIYGTSNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMAPSASTGSSLAS 154

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
                +++        +    R ++   +             L+  L  R     R +  
Sbjct: 155 YKLIILDEADAMTSTAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRC-TRFRFSPL 213

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           + +D++++V    +   + +  EA   +   S+G  R A  +L+  
Sbjct: 214 KEQDIRSLVDHVIEKEQVQIQPEAVSSLVKLSKGDMRRALNVLQAC 259


>gi|307704666|ref|ZP_07641566.1| DNA polymerase III, subunits gamma and tau [Streptococcus mitis
           SK597]
 gi|307621775|gb|EFO00812.1| DNA polymerase III, subunits gamma and tau [Streptococcus mitis
           SK597]
          Length = 551

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 53/296 (17%), Positives = 90/296 (30%), Gaps = 58/296 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     R +   +  GQ      LK  +E      E + H  LF GP G GKT++A++ A
Sbjct: 4   ALYRKYRSQNFSQLVGQEVVAKTLKQAVE-----QEKISHAYLFSGPRGTGKTSVAKIFA 58

Query: 76  RELGVNFRS------------------------TSGPVIAKAGDLAALLTN------LED 105
           + +    +                                   ++  +         L  
Sbjct: 59  KAMNCPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLAR 118

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
             V  IDE+H LS      L   +E+                         I ATT +  
Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPT------------------QNVVFILATTELHK 160

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           +   +  R       +    + +K  +    +   ++   EA   IA R+ G  R A  +
Sbjct: 161 IPATILSRVQRFEFKSIKTQD-IKEHIHYILEKENISSETEAVEIIARRAEGGMRDALSI 219

Query: 226 LRRVRDFAEVAHAKTITREIADAALLRLAIDKM--GFDQLDL-RYLTMIARNFGGG 278
           L +     +     T   E     +   A+D       Q D+ + L+ +   F  G
Sbjct: 220 LDQALSLTQGNELTTAISEEITGTISLSALDDYVAALSQQDVTKALSCLNLLFDNG 275


>gi|300214871|gb|ADJ79287.1| DNA polymerase III subunit gamma/tau [Lactobacillus salivarius CECT
           5713]
          Length = 579

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 77/226 (34%), Gaps = 21/226 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+   +  GQ      LK  I       +     LF GP G GKT+ A++ A+ +   F
Sbjct: 11  RPQRFMDLVGQEMVTRTLKNAI----ITHQTSHAYLFTGPRGTGKTSAAKIFAKAINCRF 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P      +    +T     DV+ ID      +  +  I +++ Y   E      +
Sbjct: 67  SKEGEPCNEC--ETCKAITEGRLNDVIEIDAASNNGVEEIRDIRDKVKYAPTEADYKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++   +    I ATT    +   +  R            E +
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPANVVFILATTEPHKIPATIISRTQ-RFDFKRITAESI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
              +        +   D+A   IA  + G  R A  LL +V  F +
Sbjct: 184 LQRMIYILDQKNVDYDDKALKVIAKAAEGGMRDALSLLDQVISFGD 229


>gi|212694010|ref|ZP_03302138.1| hypothetical protein BACDOR_03536 [Bacteroides dorei DSM 17855]
 gi|212663542|gb|EEB24116.1| hypothetical protein BACDOR_03536 [Bacteroides dorei DSM 17855]
          Length = 637

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 55/245 (22%), Positives = 78/245 (31%), Gaps = 54/245 (22%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T E   GQ      LK  I   K         LF GP G+GKTT A++ A+ +
Sbjct: 42  ARKYRPATFESVVGQRALTITLKNAIATGKLAHAY----LFCGPRGVGKTTCARIFAKTI 97

Query: 79  GV-------------------------NFRSTSGPVIAKAGDLAALLT------NLEDRD 107
                                      N             D+ +L+        +    
Sbjct: 98  NCQTPTAEGEACNQCESCLAFNEQRSYNIHELDAASNNSVEDIRSLIEQVRIPPQIGKYK 157

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           V  IDE+H LS          +E+          P   ++ I         ATT    + 
Sbjct: 158 VYIIDEVHMLSQAAFNAFLKTLEE----------PPHHAIFIL--------ATTEKHKIL 199

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             +  R  I    N   I+D    +Q  AKL  +    EA   IA ++ G  R A  +  
Sbjct: 200 PTILSRCQI-YDFNRIGIKDTIDHLQYVAKLEHINAEPEALTVIAQKADGGMRDALSIFD 258

Query: 228 RVRDF 232
           +V  F
Sbjct: 259 QVVSF 263


>gi|229587233|ref|YP_002845734.1| DNA polymerase III subunits gamma and tau [Rickettsia africae
           ESF-5]
 gi|228022283|gb|ACP53991.1| DNA polymerase III gamma and tau chains [Rickettsia africae ESF-5]
          Length = 533

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 87/248 (35%), Gaps = 22/248 (8%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP    E  GQ      L   I   +         L  G  G+GKTT A+++A+ +
Sbjct: 38  ARKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGY----LLTGIRGVGKTTSARIIAKAV 93

Query: 79  GVNFRSTSGPVIAKAGDLAALLT--NLEDRDVLFIDEIHRLS-----IIVEEILYPAMED 131
             +   T    I         ++  N    D++ ID   + S      I+E   Y  ++ 
Sbjct: 94  NCSALITENTTIKTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQG 153

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT V  +   +  R      L  
Sbjct: 154 KHKIFIIDEVHMLSKGAFNALLKTLEEPPPHVIFIFATTEVQKIPATIISRCQ-RYDLRR 212

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
              E++  +++   K   L    EA   IA +S G+ R A  +L +    + V     I+
Sbjct: 213 LSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDAVSILDQAASMS-VKSDNIIS 271

Query: 243 REIADAAL 250
            ++ +  L
Sbjct: 272 PQVINQML 279


>gi|116785245|gb|ABK23650.1| unknown [Picea sitchensis]
 gi|224286688|gb|ACN41047.1| unknown [Picea sitchensis]
          Length = 339

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 80/244 (32%), Gaps = 45/244 (18%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           ++   S     +   RP+ +++   Q E    L   +E        L H+LF GPPG GK
Sbjct: 1   MAPIHSSSQQWVEKYRPKQVKDVAHQEEVVRALTNTLETG-----NLPHLLFYGPPGTGK 55

Query: 68  TTLAQVVAR------------ELGVNFRSTSGPVIAKAGDLAALLTNLED---------R 106
           TT A  +A             EL  +       V  K  D AA+     +          
Sbjct: 56  TTTALAIAHQLFGPEYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSGNTNSGYLCPPF 115

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
            ++ +DE   ++   +  L   ME +                  ++RF        V  +
Sbjct: 116 KIIILDEADSMTEDAQNALRRTMETYS----------------KVTRF--CFICNYVSRI 157

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
             PL  R     R      + +   +    K  G+ +  +A   ++  S G  R A   L
Sbjct: 158 IEPLASRCA-KFRFKPLVEDIMTGRILHICKEEGVHLDSDALTMLSSISEGDLRRAITYL 216

Query: 227 RRVR 230
           +   
Sbjct: 217 QSAA 220


>gi|294778363|ref|ZP_06743786.1| DNA polymerase III, subunit gamma and tau [Bacteroides vulgatus
           PC510]
 gi|294447625|gb|EFG16202.1| DNA polymerase III, subunit gamma and tau [Bacteroides vulgatus
           PC510]
          Length = 603

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 55/245 (22%), Positives = 78/245 (31%), Gaps = 54/245 (22%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T E   GQ      LK  I   K         LF GP G+GKTT A++ A+ +
Sbjct: 8   ARKYRPATFESVVGQRALTITLKNAIATGKLAHAY----LFCGPRGVGKTTCARIFAKTI 63

Query: 79  GV-------------------------NFRSTSGPVIAKAGDLAALLT------NLEDRD 107
                                      N             D+ +L+        +    
Sbjct: 64  NCQTPTAEGEACNQCESCLAFNEQRSYNIHELDAASNNSVEDIRSLIEQVRIPPQIGKYK 123

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           V  IDE+H LS          +E+          P   ++ I         ATT    + 
Sbjct: 124 VYIIDEVHMLSQAAFNAFLKTLEE----------PPHHAIFIL--------ATTEKHKIL 165

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             +  R  I    N   I+D    +Q  AKL  +    EA   IA ++ G  R A  +  
Sbjct: 166 PTILSRCQI-YDFNRIGIKDTIDHLQYVAKLEHINAEPEALTVIAQKADGGMRDALSIFD 224

Query: 228 RVRDF 232
           +V  F
Sbjct: 225 QVVSF 229


>gi|227542728|ref|ZP_03972777.1| DNA polymerase III subunits gamma and tau [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227181494|gb|EEI62466.1| DNA polymerase III subunits gamma and tau [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 796

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 78/222 (35%), Gaps = 21/222 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP T  E  GQ      L V +++           LF GP G GKT+ A+++AR L    
Sbjct: 8   RPATFAEVRGQEHVTRPLSVALDSGNIGHAY----LFSGPRGCGKTSSARILARSLNCEH 63

Query: 83  RSTSGPVIAKAGDLAALL-TNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLD 135
             TS P   +     AL      + DV  +D     S+     L       P+   +++ 
Sbjct: 64  GPTSTP-CGECDSCRALAPGGTGNLDVTELDAASHGSVDDMRELRESAVFAPSESRYRIF 122

Query: 136 LMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ++         G     + V+        I ATT    +   ++ R              
Sbjct: 123 IIDEAHMITPQGANALLKIVEEPPEHLVFIFATTEPEKIIGTIRSRVQ-HYPFRLLTPPV 181

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           ++ ++Q      G+ V D     +     G+PR    +L ++
Sbjct: 182 MRGLLQDVCAGEGVEVEDSVFTLVIRAGGGSPRDTLSILDQL 223


>gi|205371943|ref|ZP_03224762.1| DNA polymerase III subunits gamma and tau [Bacillus coahuilensis
           m4-4]
 gi|205372023|ref|ZP_03224841.1| DNA polymerase III subunits gamma and tau [Bacillus coahuilensis
           m4-4]
          Length = 567

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 86/231 (37%), Gaps = 27/231 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T E+  GQ      L+  +       + + H  LF GP G GKT+ A+++ + +   
Sbjct: 11  RPQTFEDVVGQQHVTQTLQNAL-----LQDKISHAYLFSGPRGTGKTSAAKILGKAVNCE 65

Query: 82  FRSTSGPVIAKAGDLAAL--LTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQL 134
                 P+     + AA   + +   +DV+ ID      +  +  I +++ +        
Sbjct: 66  R----APIAEPCNECAACKGIMDGSIQDVIEIDAASNNGVEEIRDIRDKVKFAPSAVRFK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             ++ E             ++++        I ATT    +   +  R            
Sbjct: 122 VYIIDEVHMLSIGAFNALLKTLEEPPKHVMFILATTEPHKIPLTIISRCQ-RFDFKRITP 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
            D+   +   A  +G+ V ++A   IA  + G  R A  LL +   F++  
Sbjct: 181 RDIVGRMSYIANESGVDVEEQALHVIARAAEGGMRDALSLLDQAISFSDDK 231


>gi|19073950|ref|NP_584556.1| DNA REPLICATION FACTOR C (ACTIVATOR 1) SUBUNIT [Encephalitozoon
           cuniculi GB-M1]
 gi|19068592|emb|CAD25060.1| DNA REPLICATION FACTOR C (ACTIVATOR 1) SUBUNIT [Encephalitozoon
           cuniculi GB-M1]
          Length = 305

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 43/196 (21%), Positives = 71/196 (36%), Gaps = 20/196 (10%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR--- 76
              RP +L E  G  E  S+L+    A +     + ++LF GPPG GKTT  + +A    
Sbjct: 7   EKYRPGSLLEVVGNREVVSSLQSISSAGR-----IPNMLFYGPPGTGKTTSIRAIANNLP 61

Query: 77  -----ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
                EL  +       V     + A+  +      +  +DE   +S   +  L   +ED
Sbjct: 62  RTSVLELNASDERGIATVRETIKEFASTYSKTMKLVI--LDEADMMSRDAQNALRRIIED 119

Query: 132 FQLD--LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           F  +    +      + +   LSR T        G   N +++          Y  E +K
Sbjct: 120 FSANTRFCLIANHLRKIISPILSRCTKFRFGPI-GDTENRIEEICKRESIK--YTPEGIK 176

Query: 190 TIVQRGAKLTGLAVTD 205
            + +        AV D
Sbjct: 177 AVSRISMGDMRKAVND 192


>gi|290959184|ref|YP_003490366.1| DNA polymerase subunit [Streptomyces scabiei 87.22]
 gi|260648710|emb|CBG71823.1| putative DNA polymerase subunit [Streptomyces scabiei 87.22]
          Length = 793

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 74/231 (32%), Gaps = 27/231 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP +  E  GQ      L+  +   +         LF GP G GKTT A+++AR
Sbjct: 5   ALYRRYRPESFAEVIGQEHVTDPLQQALRNNRVNHAY----LFSGPRGCGKTTSARILAR 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR----DVLFIDEIHRLSII------VEEILY 126
            L        GP     G+  +      +     DV+ ID      +        +    
Sbjct: 61  CLNCE----QGPTPTPCGECQSCQDLARNGPGSIDVIEIDAASHGGVDDARELREKAFFG 116

Query: 127 PAMEDFQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
           PA   +++ ++         G     + V+        I ATT    +   ++ R     
Sbjct: 117 PASSRYKIYIIDEAHMVTSAGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSR-THHY 175

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
                    L+  +        + V +     +     G+ R +  ++ ++
Sbjct: 176 PFRLVPPGTLREYLAEVCGKEKIPVDEAVLPLVVRAGAGSVRDSMSVMDQL 226


>gi|224000545|ref|XP_002289945.1| replication factor C 37 KD subunit [Thalassiosira pseudonana
           CCMP1335]
 gi|220975153|gb|EED93482.1| replication factor C 37 KD subunit [Thalassiosira pseudonana
           CCMP1335]
          Length = 346

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 89/249 (35%), Gaps = 31/249 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP++L++ + Q E  S LK  +E  +     L H+LF GPPG GKT++A  + R
Sbjct: 16  PWVERYRPKSLQDVSHQGEIISTLKNAVETNR-----LPHLLFYGPPGTGKTSVALALCR 70

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE----ILYPAMEDF 132
           +L    +     +   A D   +         +  D+I   + +  +      YP    F
Sbjct: 71  QLFEPSQLRRRVLELNASDERGIS--------VVRDKIKHFASLAIDTETTKKYP-NPPF 121

Query: 133 QLDLMVGEGPSARSVKINLSRF--------TLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           ++ ++       R  +  L R           I     V  +  PL  R     R     
Sbjct: 122 KIIILDEADTVTRDAQAALRRVIEAYSKVTRFILICNYVTRIIEPLASRCA-KFRFQPLP 180

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMR----SRGTPRIAGRLLRRVRDFAEVAHAKT 240
           +E +K  ++  A        +    E+       S+G  R A   L+     +  A    
Sbjct: 181 VESMKARIKYIAHEEHCQFEEGKEEEVVDEILTLSQGDMRRAVTTLQSAHSLSGGAGEVI 240

Query: 241 ITREIADAA 249
               IA+ A
Sbjct: 241 KKDSIAEMA 249


>gi|116206666|ref|XP_001229142.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
 gi|88183223|gb|EAQ90691.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
          Length = 356

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 80/233 (34%), Gaps = 38/233 (16%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           + N + E   +   RP  L++  G  E    LK+      AR   + H++  G PG+GKT
Sbjct: 25  TGNPTYELPWVEKYRPVFLDDIVGNTETIERLKII-----ARDGNMPHLIISGMPGIGKT 79

Query: 69  TLAQVVARE-----LGVNFRSTSGPVIAKAGDLAALLTNLEDR---------DVLFIDEI 114
           T    ++R+             +         +   +     +          ++ +DE 
Sbjct: 80  TSVLCLSRQLLGDSYKEAVLELNASDERGIEVVRQRIKGFAQKKVTLPQGRHKIVILDEA 139

Query: 115 HRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRF 174
             ++   ++ L   ME +                 N +RF    A  +   +  PLQ R 
Sbjct: 140 DSMTSGAQQALRRTMEIYS----------------NTTRFAF--ACNQSNKIIEPLQSRC 181

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
            I       + + +K ++Q   +   +   DE    +   + G  R A   L+
Sbjct: 182 AILRYAKLTDAQVVKRLLQ-IIEAEKVEYNDEGLAALVFSAEGDMRQAINNLQ 233


>gi|325198577|gb|ADY94033.1| DNA polymerase III, subunits gamma and tau [Neisseria meningitidis
           G2136]
          Length = 710

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 50/303 (16%), Positives = 90/303 (29%), Gaps = 63/303 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T  +  GQ      L+  ++  +     L H  L  G  G+GKTT+A+++A+ L   
Sbjct: 11  RPKTFADLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCE 65

Query: 82  FRS------------------------TSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                                ++  +L N +         V  I
Sbjct: 66  NAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTGIDNIREILENAQYAPTAGKYKVYII 125

Query: 112 DEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+H LS      +   +E+    +  ++      +     LSR                
Sbjct: 126 DEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNM------- 178

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
                           + +   +        +A    A   +   + G+ R A  LL + 
Sbjct: 179 --------------TAQQVADHLAHVLDSEKIAYEPAALQLLGRAAAGSMRDALSLLDQA 224

Query: 230 RDFAEVAHAKTITREIADAALLRLAIDKM-GFDQLDLRYLTMIARNFGGGPVGIETISAG 288
                   A+   R++  A   +   + + G    D   LT  A+      VG +     
Sbjct: 225 IALGSGKVAENDVRQMIGAVDKQYLYELLTGIINQDGAALTAKAQEMAACAVGFDN---A 281

Query: 289 LSE 291
           L E
Sbjct: 282 LGE 284


>gi|304385469|ref|ZP_07367814.1| DNA polymerase III, gamma/tau subunit DnaX [Pediococcus
           acidilactici DSM 20284]
 gi|304328676|gb|EFL95897.1| DNA polymerase III, gamma/tau subunit DnaX [Pediococcus
           acidilactici DSM 20284]
          Length = 578

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 65/302 (21%), Positives = 112/302 (37%), Gaps = 38/302 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+   +  GQ      LK     A    +     LF GP G GKT+ A++ A+ +  ++
Sbjct: 11  RPQKFADMVGQEVVTRTLK----NALITKQTSHAYLFTGPRGTGKTSAAKIFAKAVNCHY 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
               G    +     A+ T+    DV+ ID      +  +  I ++  Y   E      +
Sbjct: 67  L-KDGEPCNECATCRAI-TDGNLNDVIEIDAASNNGVEEIRDIRDKAKYAPTEADYKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++   +    I ATT    +   +  R            +  
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPTNVIFILATTEPQKIPLTIISRTQRFDFKRITPTQSY 184

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             +V    +  G+    +A   IA  + G  R A  +L +V  F         T  + +A
Sbjct: 185 DRMV-YILEQKGIEYDPKALSIIAKAAEGGMRDALSILDQVISF------GNETVTMDNA 237

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRD---AIEDLI--EPY 303
            L+  ++++   DQ    YLT I       P  +ET+   L E +D    IEDLI  E  
Sbjct: 238 LLVTGSVNQQLLDQ----YLTQIFE--KDTPAALETLHQILDEGKDGQRLIEDLIAVERN 291

Query: 304 MI 305
           ++
Sbjct: 292 LL 293


>gi|284799544|ref|ZP_06390208.1| DNA polymerase III, subunit gamma and tau [Neisseria subflava
           NJ9703]
 gi|284797352|gb|EFC52699.1| DNA polymerase III, subunit gamma and tau [Neisseria subflava
           NJ9703]
          Length = 398

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 80/259 (30%), Gaps = 59/259 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T  +  GQ      L+  ++  +     L H  L  G  G+GKTT+A+++A+ L   
Sbjct: 11  RPKTFADLVGQEHVVKALRNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCE 65

Query: 82  FRS------------------------TSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                                ++  +L N +         V  I
Sbjct: 66  NAVHGEPCGQCESCTQIDSGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYII 125

Query: 112 DEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+H LS      +   +E+    +  ++      +     LSR                
Sbjct: 126 DEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPITVLSRCLQ------------- 172

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
               F +         E L  ++ R      +    +A   +   + G+ R A  LL + 
Sbjct: 173 ----FVLRNMTTQQVAEHLAHVLDR----ENVPYQPQALQLLGRAAAGSMRDALSLLDQA 224

Query: 230 RDFAEVAHAKTITREIADA 248
                   A+   R++  A
Sbjct: 225 IAMGSGKVAEQDVRQMIGA 243


>gi|260893960|ref|YP_003240057.1| DNA polymerase III, subunits gamma and tau [Ammonifex degensii KC4]
 gi|260866101|gb|ACX53207.1| DNA polymerase III, subunits gamma and tau [Ammonifex degensii KC4]
          Length = 427

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 48/239 (20%), Positives = 86/239 (35%), Gaps = 25/239 (10%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +++E A     RP+   +  GQ      L+  +   +         LF GP G GKT+ A
Sbjct: 1   MAEEQALYRAWRPQQFAQVVGQAHVTRTLRNALAMGRIAHAY----LFAGPRGTGKTSTA 56

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR--DVLFID-----EIHRLSIIVEEI 124
           +++A+ L        GP           L+ +E    DVL ID      I  +  + E +
Sbjct: 57  RILAKALNC----LQGPTPVPCDTCPQCLSIMEGTSLDVLEIDAASRRGIDEMRELRERV 112

Query: 125 LYPAMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
               +       ++ E             ++++    +   I ATT    +   +  R  
Sbjct: 113 RLSPVHSRYKVYIIDEAHMLTSEAANALLKTLEEPPPQVVFILATTEPHKIPVTILSRCQ 172

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
                       ++  + R A+   + V  EA   +A  + G+ R A  LL +   +AE
Sbjct: 173 -RFDFRRLPTALIEEHLARVAETFPVKVEREALRLLAQAAEGSMRDALSLLDQALAWAE 230


>gi|221052961|ref|XP_002257855.1| replication factor C, subunit 2 [Plasmodium knowlesi strain H]
 gi|193807687|emb|CAQ38391.1| replication factor C, subunit 2, putative [Plasmodium knowlesi
           strain H]
          Length = 330

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 48/218 (22%), Positives = 92/218 (42%), Gaps = 14/218 (6%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+ L++   Q  A S LK  +     R + + H++F GPPG GKT+    +A 
Sbjct: 5   PWVEKYRPKKLDDIVHQTNAVSMLKEVV-----RTKNMPHLIFHGPPGTGKTSAINALAH 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAAL---LTNLEDRDVLFIDEIHRLSIIVEEILYPA--MED 131
           EL      +   +   A D   +      ++    + I + ++++    E L P   +  
Sbjct: 60  ELFGRDNISERVLELNASDDRGINVVREKIKAYTRISISK-NKINSETNETLPPWKLVVL 118

Query: 132 FQLDLMVGEGPSA--RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
            + D+M  +  SA  R ++I  +    I     +  +++P+  R     R     I+  K
Sbjct: 119 DEADMMTEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIYSRCS-CYRFQGIPIDVKK 177

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             +    K  G+ + D+A  +I   ++G  R A  +L+
Sbjct: 178 EKLLYICKSEGINILDDALDKIIETTQGDLRRAVSILQ 215


>gi|15669613|ref|NP_248426.1| replication factor C small subunit [Methanocaldococcus jannaschii
           DSM 2661]
 gi|42559435|sp|Q58817|RFCS_METJA RecName: Full=Replication factor C small subunit; Short=RFC small
           subunit; AltName: Full=Clamp loader small subunit;
           Contains: RecName: Full=Mja RFC-1 intein; Contains:
           RecName: Full=Mja RFC-2 intein; Contains: RecName:
           Full=Mja RFC-3 intein
 gi|1592072|gb|AAB99433.1| activator 1 (replication factor C), 35 KD subunit
           [Methanocaldococcus jannaschii DSM 2661]
          Length = 1847

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 33/129 (25%), Positives = 57/129 (44%), Gaps = 11/129 (8%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK--TTLAQ 72
           E   +   RP+TL++  GQ E    LK ++E      +++ H+LF GPPG+GK  T   +
Sbjct: 6   EKPWVEKYRPKTLDDIVGQDEIVKRLKKYVE-----KKSMPHLLFSGPPGVGKCLTGDTK 60

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           V+            G VI +  +    +T   +  VL IDE  ++     + +Y    + 
Sbjct: 61  VIVN----GEIREIGEVIEEISNGKFGVTLTNNLKVLGIDEDGKIREFDVQYVYKDKTNT 116

Query: 133 QLDLMVGEG 141
            + +    G
Sbjct: 117 LIKIKTKMG 125


>gi|319900098|ref|YP_004159826.1| DNA polymerase III, tau subunit [Bacteroides helcogenes P 36-108]
 gi|319415129|gb|ADV42240.1| DNA polymerase III, tau subunit [Bacteroides helcogenes P 36-108]
          Length = 611

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 75/228 (32%), Gaps = 20/228 (8%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T E   GQ    + LK  I   K         LF GP G+GKTT A++ A+ +
Sbjct: 8   ARKYRPSTFESVVGQRALTTTLKNAIATGKLAHAY----LFCGPRGVGKTTCARIFAKTI 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL-----YPAMEDFQ 133
                +  G    +     A        ++  +D     S+     L      P      
Sbjct: 64  NCMTPTADGEACNQCESCTA-FNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKY 122

Query: 134 LDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
              ++ E             ++++        I ATT    +   +  R  I        
Sbjct: 123 KVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFSRI-G 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           +ED    +   A   G+    EA   IA+++ G  R A  +  +V  F
Sbjct: 182 VEDTVAHLAYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSF 229


>gi|317477107|ref|ZP_07936348.1| DNA polymerase III [Bacteroides eggerthii 1_2_48FAA]
 gi|316906650|gb|EFV28363.1| DNA polymerase III [Bacteroides eggerthii 1_2_48FAA]
          Length = 606

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 76/228 (33%), Gaps = 20/228 (8%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T E   GQ    + LK  I   K         LF GP G+GKTT A++ A+ +
Sbjct: 8   ARKYRPSTFESVVGQHALTTTLKNAIATNKLAHAY----LFCGPRGVGKTTCARIFAKTI 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL-----YPAMEDFQ 133
                +  G    +     A        ++  +D     S+     L      P      
Sbjct: 64  NCMSPTAEGEACNQCESCTA-FNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKY 122

Query: 134 LDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
              ++ E             ++++        I ATT    +   +  R  I    N   
Sbjct: 123 KVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQI-YDFNRIS 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           +ED    +   A   G+    EA   IA+++ G  R A  +  +V  F
Sbjct: 182 VEDTVAHLAYVASKEGITAEPEALNIIALKADGGMRDALSIFDQVVSF 229


>gi|146307669|ref|YP_001188134.1| DNA polymerase III subunits gamma and tau [Pseudomonas mendocina
           ymp]
 gi|145575870|gb|ABP85402.1| DNA polymerase III, subunits gamma and tau [Pseudomonas mendocina
           ymp]
          Length = 692

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 63/327 (19%), Positives = 97/327 (29%), Gaps = 65/327 (19%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPR+  E  GQ      LK  I A    ++ L H  LF G  G+GKTT+A+++A+ L   
Sbjct: 11  RPRSFREMVGQTHV---LKALINA--LDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNCE 65

Query: 82  FRSTS------------------------GPVIAKAGDLAALLTNLE------DRDVLFI 111
              +S                             K  D   LL N++         V  I
Sbjct: 66  TGISSTPCGTCSVCREIDEGRFVDLIEVDAASRTKVEDTRELLDNVQYSPSRGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSTSSFNALLKTLEE------------------PPPHVKFLLATTDPQKLPVTVL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L     E +   +        +   D+A   +   + G+ R A  L     D
Sbjct: 168 SRC-LQFSLKNMPPERVVEHLSHVLTAENVPFEDDALWLLGRAADGSMRDAMSL----TD 222

Query: 232 FAEVAHAKTITREIADAALLRLAIDK-----MGFDQLD-LRYLTMIARNFGGGPVGIETI 285
            A       +      A L  L   +         + D    +  +      GP     +
Sbjct: 223 QAIAFGEGKVLAADVRAMLGTLDHGQVYGVLHALFEGDARALIEAVRHLAEQGPDWNGVL 282

Query: 286 SAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           +  L+           P  +  G   R
Sbjct: 283 AEMLNVLHRVAIAQALPDAVDNGQGDR 309


>gi|33862214|ref|NP_893775.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
 gi|33634432|emb|CAE20117.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
          Length = 579

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 45/214 (21%), Positives = 75/214 (35%), Gaps = 19/214 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP  L+E  GQ      LK  + + K         LF GP G GKT+ A++ A+ L    
Sbjct: 13  RPLNLDELVGQEFISITLKQALISQKIA----PAYLFNGPRGTGKTSSARIFAKSLNCLS 68

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P   +  +L   +      D++ ID      +  +  I++   +   +      +
Sbjct: 69  SKQPTPNPCEKCELCIQIAEGNALDIIEIDAASNTGVENIREIIDRARFAPTQARWKVYV 128

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++    R   I ATT    + N +Q R              +
Sbjct: 129 IDECHMLSTAASNALLKTIEEPPERVVFILATTNPERVINTIQSRCQ-KFDFKRISANTI 187

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
              +   A    +   D+A   IA RS G  R A
Sbjct: 188 FNNLSAIANKESIKFEDQALKLIAKRSNGGMRDA 221


>gi|59712294|ref|YP_205070.1| DNA polymerase III subunits gamma and tau [Vibrio fischeri ES114]
 gi|59480395|gb|AAW86182.1| DNA polymerase III/DNA elongation factor III, tau and gamma
           subunits [Vibrio fischeri ES114]
          Length = 708

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 59/279 (21%), Positives = 88/279 (31%), Gaps = 63/279 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP   ++  GQ    + L    E A          LF G  G+GKTT+A++ A+ L    
Sbjct: 11  RPHHFKDVVGQPHVLTAL----ENALDHNRLHHAYLFSGTRGVGKTTIARLFAKGLNCEE 66

Query: 83  RSTS------------------------GPVIAKAGDLAALLTNLEDRD------VLFID 112
             TS                             K  D   LL N++ +       V  ID
Sbjct: 67  GITSTPCGVCSTCKEIDEGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRFKVYLID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS      L   +E+                         + ATT    L   +  
Sbjct: 127 EVHMLSRHSFNALLKTLEE------------------PPEYVKFLLATTDPQKLPVTILS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R  +   L    ++ +   +        ++    A   IA  + G+ R A  L     D 
Sbjct: 169 RC-LQFHLKHISVDQIHEQLDFVLDKEEVSKEARALGLIAHAADGSMRDALSL----TDQ 223

Query: 233 AEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMI 271
           A      ++T EI  A L  L  D+       +R L  I
Sbjct: 224 AIALGNGSVTAEIVSAMLGTLDTDQA------IRILEAI 256


>gi|225459627|ref|XP_002285875.1| PREDICTED: hypothetical protein isoform 2 [Vitis vinifera]
          Length = 329

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 60/302 (19%), Positives = 97/302 (32%), Gaps = 69/302 (22%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           ++  +      +   RP+ +++   Q E C                  H+LF GPPG GK
Sbjct: 1   MAPVLQSSQPWVEKYRPKQVKDVAHQDEVC-----------------PHMLFYGPPGTGK 43

Query: 68  TTLAQVVAR-------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------- 106
           TT A  +A              EL  +       V  K  D AA+      R        
Sbjct: 44  TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSGHRQGGYPCPP 103

Query: 107 -DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
             ++ +DE   ++   +  L   ME +                  ++RF  I     +  
Sbjct: 104 YKIIILDEADSMTEDAQNALRRTMETYS----------------KVTRFFFIC--NYISR 145

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           +  PL  R     R      E + + +    K   L +  EA   ++  S+G  R A   
Sbjct: 146 IIEPLASRCA-KFRFKPLSEEIMSSRILHICKEEELNLDSEALSTLSSISQGDLRRAITY 204

Query: 226 LR-RVRDFAEVAHAKT------ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
           L+   R F  +  +K       +  +    AL         FD  +     +IA    G 
Sbjct: 205 LQGAARLFGSIISSKDLISVSGVVPQHVVQALFAAC-KSGDFDSANKEVNNVIAE---GY 260

Query: 279 PV 280
           PV
Sbjct: 261 PV 262


>gi|159035922|ref|YP_001535175.1| DNA polymerase III, subunits gamma and tau [Salinispora arenicola
           CNS-205]
 gi|157914757|gb|ABV96184.1| DNA polymerase III, subunits gamma and tau [Salinispora arenicola
           CNS-205]
          Length = 834

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 53/262 (20%), Positives = 90/262 (34%), Gaps = 26/262 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RPRT  E  GQ      L   + + +         LF GP G GKT+ A+++AR
Sbjct: 4   ALYRKYRPRTFAEIIGQEHVTEPLSQALRSGRLNHAY----LFSGPRGCGKTSSARILAR 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTN-LEDRDVLFID-----EIHRLSIIVEEILYPAME 130
            L      T  P     G   AL T+     DV+ ID      +     + E+  +   +
Sbjct: 60  SLNCEHGPTPEP-CGTCGSCRALATDGAGSIDVIEIDAASHGGVDDARELREKAFFAPAQ 118

Query: 131 DFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
                 ++ E             + V+        I ATT    +   ++ R        
Sbjct: 119 SRFKIYVIDEAHMVSSAGFNALLKLVEEPPEYVKFIFATTEPEKVLGTIKSR-THHYPFR 177

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
               + L+  +++  +  G+ V       +     G+ R +  +L ++     +A A   
Sbjct: 178 LIPPKVLRPYLEQLCQAEGVQVEPAVFPLVVRAGGGSARDSLSVLDQL-----IAGAGPE 232

Query: 242 TREIADAALLRLAIDKMGFDQL 263
               A AA L    D    D++
Sbjct: 233 GVTYARAAALLGVTDSALIDEM 254


>gi|156064851|ref|XP_001598347.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980]
 gi|154691295|gb|EDN91033.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 333

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 80/242 (33%), Gaps = 39/242 (16%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   +   RP  L++  G  E    LK+      A+   + HV+  G PG+GKTT    +
Sbjct: 32  ELPWVEKYRPVFLDDVVGNTETIERLKII-----AKDGNMPHVIISGMPGIGKTTSVLCL 86

Query: 75  AR------------ELGVNFRSTSGPVIAKAGDLA--ALLTNLEDRDVLFIDEIHRLSII 120
           AR            EL  +       V  +    A   +        ++ +DE   ++  
Sbjct: 87  ARQLLGDSYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPAGRHKLVILDEADSMTSG 146

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            ++ L   ME +                   +RF    A  +   +  PLQ R  I    
Sbjct: 147 AQQALRRTMEIYSST----------------TRFAF--ACNQSNKIIEPLQSRCAILRYA 188

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA-GRLLRRVRDFAEVAHAK 239
              + + +K ++Q   +   +  +++    +   + G  R A   L      F  V    
Sbjct: 189 RLTDAQVVKRLLQ-IIEAEKVEYSEDGLAALVFSAEGDMRQAINNLQSTFAGFGFVNGDN 247

Query: 240 TI 241
             
Sbjct: 248 VF 249


>gi|67902154|ref|XP_681333.1| hypothetical protein AN8064.2 [Aspergillus nidulans FGSC A4]
 gi|40740496|gb|EAA59686.1| hypothetical protein AN8064.2 [Aspergillus nidulans FGSC A4]
 gi|259480821|tpe|CBF73811.1| TPA: subunit of heteropentameric Replication factor (Eurofung)
           [Aspergillus nidulans FGSC A4]
          Length = 398

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 84/228 (36%), Gaps = 17/228 (7%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
                   +   RP TL++ +G  +  + +  F+EA       L H+L  GPPG GKT+ 
Sbjct: 40  EAQDNLPWVEKYRPNTLDDVSGHKDILATINRFVEA-----NQLPHLLLYGPPGTGKTST 94

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAAL-LTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
              +AR +  +       +   A D   + +   + +      +I  ++         ++
Sbjct: 95  ILALARRIYGSKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMAPSATGK--SSL 152

Query: 130 EDFQLDLMVGEGPSARSVKINLSRF--------TLIAATTRVGLLTNPLQDRFGIPIRLN 181
             F+L ++        + ++ L R                    L+  L  R     R +
Sbjct: 153 ASFKLIILDEADAMTSTAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRC-TRFRFS 211

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
             + +D++ ++ +  +   + +  EA   +   SRG  R A  +L+  
Sbjct: 212 PLKEQDIRVLIDQVIEKEDVRIQPEAVDSLVTLSRGDMRRALNVLQAC 259


>gi|325973697|ref|YP_004250761.1| DNA polymerase III subunits gamma and tau [Mycoplasma suis str.
           Illinois]
 gi|323652299|gb|ADX98381.1| DNA polymerase III, subunits gamma and tau [Mycoplasma suis str.
           Illinois]
          Length = 391

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 55/300 (18%), Positives = 104/300 (34%), Gaps = 36/300 (12%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +  RP+   E  GQ  +    K+ I   K +A+ +   LF GP G GKTT A++ +R + 
Sbjct: 4   NKYRPQFFRELVGQEFSK---KLLINILKQKAD-VHSFLFYGPNGTGKTTSARLFSRAIN 59

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII------VEEILYPAMEDFQ 133
                  G  I    +   +       D++ ID      +           +YP +   +
Sbjct: 60  CENF-LEGEDICGKCEACKISREEGCTDIIEIDGATNNGVEFIREFIKNNAIYPPLLLKK 118

Query: 134 LDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
              ++ E             + ++   S   LI  TT +  +   +  R    +  +  E
Sbjct: 119 KIYLIDEAHCLSIQAWNSLLKIIEEPPSHLILIFLTTEIHKIIPTILSRCQ-KLLFSPLE 177

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
              L + +++ + L       E   +I   S G+ R +  LL +   F      K    E
Sbjct: 178 ENTLISFLEKISSLENKETKKELLKKIFEESNGSVRESLVLLEK--TFINQKSDKEELIE 235

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
                         G + + L  L +I ++       +  +S  LS      E +++  +
Sbjct: 236 NL-----------EGIETISLELLNLILKS--NYSESLAKLSENLSSSTKIFEIILDRLL 282


>gi|309379703|emb|CBX21692.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 707

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 50/303 (16%), Positives = 90/303 (29%), Gaps = 63/303 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T  +  GQ      L+  ++  +     L H  L  G  G+GKTT+A+++A+ L   
Sbjct: 11  RPKTFADLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCE 65

Query: 82  FRS------------------------TSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                                ++  +L N +         V  I
Sbjct: 66  NAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYII 125

Query: 112 DEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+H LS      +   +E+    +  ++      +     LSR                
Sbjct: 126 DEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNM------- 178

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
                           + +   +        +A    A   +   + G+ R A  LL + 
Sbjct: 179 --------------TSQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQA 224

Query: 230 RDFAEVAHAKTITREIADAALLRLAIDKM-GFDQLDLRYLTMIARNFGGGPVGIETISAG 288
                   A+   R++  A   +   + + G    D   LT  A+      VG +     
Sbjct: 225 IALGSGKVAENDVRQMIGAVDKQYLYELLTGIINQDGAALTAKAQEMAACAVGFDN---A 281

Query: 289 LSE 291
           L E
Sbjct: 282 LGE 284


>gi|297158535|gb|ADI08247.1| DNA polymerase III subunits gamma and tau [Streptomyces
           bingchenggensis BCW-1]
          Length = 892

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 79/240 (32%), Gaps = 29/240 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T  E  GQ      L+  +   +         LF GP G GKTT A+++AR
Sbjct: 15  ALYRRYRPETYAEVIGQEHVTGPLQQALRNNRVNHAY----LFSGPRGCGKTTSARILAR 70

Query: 77  ELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFIDEIHRLSII------VEEILYPA 128
            L      T  P        DLA         DV+ ID      +        +    PA
Sbjct: 71  CLNCEKGPTPAPCGECQSCQDLA--RNGPGSIDVIEIDAASHGGVDDARELREKAFFGPA 128

Query: 129 MEDFQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR---FGIP 177
              +++ ++         G     + V+        I ATT    +   ++ R   +   
Sbjct: 129 SSRYKIYIIDEAHMVTSAGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSRTHHYPFR 188

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
           +       + L  + +R A    + V D     +     G+ R +  ++ ++   A    
Sbjct: 189 LVPPGTLRDYLAEVCEREA----IPVEDGVLPLVVRAGAGSVRDSMSVMDQLLAGAAEDG 244


>gi|322376416|ref|ZP_08050909.1| DNA polymerase III, gamma and tau subunits [Streptococcus sp. M334]
 gi|321282223|gb|EFX59230.1| DNA polymerase III, gamma and tau subunits [Streptococcus sp. M334]
          Length = 551

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 53/296 (17%), Positives = 89/296 (30%), Gaps = 58/296 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     R +   +  GQ      LK  +E      E + H  LF GP G GKT++A++ A
Sbjct: 4   ALYRKYRSQNFSQLVGQEVVAKTLKQAVE-----QEKISHAYLFSGPRGTGKTSVAKIFA 58

Query: 76  RELGVNFRS------------------------TSGPVIAKAGDLAALLTN------LED 105
           + +    +                                   ++  +         L  
Sbjct: 59  KAMNCPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLAR 118

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
             V  IDE+H LS      L   +E+                         I ATT +  
Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPT------------------QNVVFILATTELHK 160

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           +   +  R       +    + +K  +    +   ++   EA   IA R+ G  R A  +
Sbjct: 161 IPATILSRVQRFEFKSIKTQD-IKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSI 219

Query: 226 LRRVRDFAEVAHAKTITREIADAALLRLAIDKM--GFDQLDL-RYLTMIARNFGGG 278
           L +     +     T   E     +   A+D       Q D+ + L  +   F  G
Sbjct: 220 LDQALSLTQGNELTTAISEEITGTISLSALDDYVVALSQQDVPKALACLNLLFDNG 275


>gi|294155950|ref|YP_003560334.1| DNA polymerase III, gamma and tau subunit [Mycoplasma crocodyli
           MP145]
 gi|291600185|gb|ADE19681.1| DNA polymerase III, gamma and tau subunit [Mycoplasma crocodyli
           MP145]
          Length = 676

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 57/187 (30%), Gaps = 35/187 (18%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T +E  GQ      LK  I + K         +F GP G+GKT++A++ A 
Sbjct: 5   ALYRKYRPTTFDEVKGQEHIVVTLKNIISSRKIGHAY----IFSGPRGVGKTSVARIFAN 60

Query: 77  ELGVNFRSTSGPV---------------------------IAKAGDLAALLTNLEDRDVL 109
            L    +                                 I    +   LL       + 
Sbjct: 61  VLNCMHQEDLTKACPDCYRLIKSNIDVIEMDAASNNGVDEIRDLKEKVELLPTYGRYKIY 120

Query: 110 FIDEIHRLSIIVEEILYPAMED---FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
            IDE+H LS      L   +E+     + ++    P  +     LSR            +
Sbjct: 121 IIDEVHMLSKGAFNALLKTLEEPPAHAIFILATTDPQ-KIPLTILSRSQRFNFRRIATNV 179

Query: 167 TNPLQDR 173
            +   + 
Sbjct: 180 LSKTLEE 186


>gi|317131169|ref|YP_004090483.1| DNA polymerase III, subunits gamma and tau [Ethanoligenens
           harbinense YUAN-3]
 gi|315469148|gb|ADU25752.1| DNA polymerase III, subunits gamma and tau [Ethanoligenens
           harbinense YUAN-3]
          Length = 559

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 57/279 (20%), Positives = 95/279 (34%), Gaps = 37/279 (13%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPRT E+  GQ +  + L   + A +         LF G  G GKTT A+++A+ +    
Sbjct: 10  RPRTFEDVAGQPQIVATLLGELRAGRVAHAY----LFTGSRGTGKTTCAKILAKAVNCLH 65

Query: 83  RSTSGPVIAKAGDLA--ALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLD 135
                P     G+ A    + +    DV+ ID      +  +  + EE +Y         
Sbjct: 66  PQNGDP----CGECAVCRGIDDGSLTDVVEIDAASNNGVDSIRALREETVYTPAAAKYRV 121

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             ++++   +    I ATT    +   +  R             
Sbjct: 122 YIIDEAHMLSAGAFNALLKTLEEPPAYVLFILATTEAHKIPATILSRCQ-RFDFRRIPPA 180

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           D+   +   A+   + +T + A  IA  + G  R A  LL      A           +A
Sbjct: 181 DIAARLLYVAEQEHIPLTQDGAEAIARLADGALRDALSLLDTC---ANGGGDAVDEEAVA 237

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETI 285
            AA         G    D  Y    A + G  P  + T+
Sbjct: 238 RAA---------GLAGRDYLYALSDAVHAGDAPQALRTL 267


>gi|322372837|ref|ZP_08047373.1| DNA polymerase III, gamma and tau subunits [Streptococcus sp. C150]
 gi|321277879|gb|EFX54948.1| DNA polymerase III, gamma and tau subunits [Streptococcus sp. C150]
          Length = 552

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 55/258 (21%), Positives = 92/258 (35%), Gaps = 27/258 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     R +T  E  GQ    + LK  +E+ K         LF GP G GKT+ A++ A+
Sbjct: 4   ALYRKYRSQTFGEMVGQKVISTTLKQAVESGKISHAY----LFSGPRGTGKTSAAKIFAK 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +    +    P      D+   +TN    DV+ ID      +  +  I ++  Y     
Sbjct: 60  AMNCPNQVDGEPCNHC--DICRDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRA 117

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQD---RFGIPIR 179
                ++ E             ++++        I ATT +  +   +     RF     
Sbjct: 118 TYKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAI 177

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
                 E L +I+    K  G+   DEA   IA R+ G  R A  +L +    +   +  
Sbjct: 178 KQAAIKEHLASIL----KKEGMTFDDEALTIIARRAEGGMRDALSILDQALSLSSDNNVS 233

Query: 240 TITREIADAALLRLAIDK 257
               E    ++   A+D 
Sbjct: 234 QAVAEEITGSIGLTALDS 251


>gi|256852105|ref|ZP_05557492.1| DNA polymerase III  gamma-tau [Lactobacillus jensenii 27-2-CHN]
 gi|260661325|ref|ZP_05862238.1| DNA polymerase III gamma-tau [Lactobacillus jensenii 115-3-CHN]
 gi|282934786|ref|ZP_06340024.1| DNA polymerase III, gamma and tau subunit [Lactobacillus jensenii
           208-1]
 gi|256615517|gb|EEU20707.1| DNA polymerase III gamma-tau [Lactobacillus jensenii 27-2-CHN]
 gi|260547780|gb|EEX23757.1| DNA polymerase III gamma-tau [Lactobacillus jensenii 115-3-CHN]
 gi|281301149|gb|EFA93455.1| DNA polymerase III, gamma and tau subunit [Lactobacillus jensenii
           208-1]
          Length = 593

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 51/290 (17%), Positives = 102/290 (35%), Gaps = 25/290 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPRT +   GQ      LK  I     R +     LF GP G GKT+ A++ A+ L    
Sbjct: 11  RPRTFDSVVGQEAITDTLKNAI----IRNKVSHAFLFAGPRGTGKTSCAKIFAKALNCLN 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
               G    +  +  A  +     D++ ID      +  +  I +++ Y   +      +
Sbjct: 67  LQD-GEPCNECENCKAADSGAMP-DIIEIDAASNNGVDEIREIRDKVKYAPTQGKYKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT +  +   +  R            ++L
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRI-SKQNL 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              ++   +   +   ++A   IA  + G  R +  +L ++  F +          I   
Sbjct: 184 VDRMKFILEQEDIPYENQALQVIAQVADGGMRDSLSILDQLLSFEKEKVEYKDALNITGY 243

Query: 249 ALLRLAIDKMGFDQLDLRY---LTMIARNFGGGPVGIETISAGLSEPRDA 295
           A  R A +++  + L+ +    L +  +    G      +S  +S   + 
Sbjct: 244 A-AREATEQLFLNLLNQKVSESLELSHKLLQDGATAKNLLSELISLATET 292


>gi|320159544|ref|YP_004172768.1| DNA polymerase III gamma and tau subunits [Anaerolinea thermophila
           UNI-1]
 gi|319993397|dbj|BAJ62168.1| DNA polymerase III gamma and tau subunits [Anaerolinea thermophila
           UNI-1]
          Length = 553

 Score = 66.6 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 86/243 (35%), Gaps = 54/243 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV-- 80
           RPR  E+  GQ      L+  +   +         LF GP G GKTT A+++A+ +    
Sbjct: 10  RPRLWEQVVGQDHIIQTLRNAVRTGRVGHAY----LFAGPRGTGKTTTARLLAKAVNCLE 65

Query: 81  --------------------------NFRSTSGPVIAKAGDLAALLT---NLEDRDVLFI 111
                                        + S   +    DL   +    +     V  I
Sbjct: 66  EDPAKRPCDQCAHCIAVNEGRFLDLIEIDAASNTSVEDVRDLRDKINFAPSQGRYKVYII 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+          P A ++ I         ATT V  +   + 
Sbjct: 126 DEVHMLSTAAFNALLKTLEE----------PPAHAIFIL--------ATTEVHKIPATVL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R           ++ +  ++++ A   GLAV ++A   IA ++ G+ R A  +L ++  
Sbjct: 168 SRCQRHEFRRV-PVQQIAALLRQKAAEDGLAVDEDALLMIARQATGSFRDAISILDQLSS 226

Query: 232 FAE 234
             E
Sbjct: 227 TGE 229


>gi|189464151|ref|ZP_03012936.1| hypothetical protein BACINT_00487 [Bacteroides intestinalis DSM
           17393]
 gi|189437941|gb|EDV06926.1| hypothetical protein BACINT_00487 [Bacteroides intestinalis DSM
           17393]
          Length = 616

 Score = 66.6 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 76/228 (33%), Gaps = 20/228 (8%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T E   GQ    + LK  I   K         LF GP G+GKTT A++ A+ +
Sbjct: 8   ARKYRPTTFESVVGQRALTTTLKNAIATGKLAHAY----LFCGPRGVGKTTCARIFAKTI 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL-----YPAMEDFQ 133
                +  G    +     A        ++  +D     S+     L      P      
Sbjct: 64  NCMSPTAEGEACNQCESCTA-FNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKY 122

Query: 134 LDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
              ++ E             ++++        I ATT    +   +  R  I    N   
Sbjct: 123 KVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQI-YDFNRIN 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           ++D    +   A   G+    EA   IA+++ G  R A  +  +V  F
Sbjct: 182 VDDTVAHLAYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSF 229


>gi|297205020|ref|ZP_06922416.1| DNA polymerase III (DNA directed) gamma-tau [Lactobacillus jensenii
           JV-V16]
 gi|297149598|gb|EFH29895.1| DNA polymerase III (DNA directed) gamma-tau [Lactobacillus jensenii
           JV-V16]
          Length = 593

 Score = 66.6 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 51/290 (17%), Positives = 102/290 (35%), Gaps = 25/290 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPRT +   GQ      LK  I     R +     LF GP G GKT+ A++ A+ L    
Sbjct: 11  RPRTFDSVVGQEAITDTLKNAI----IRNKVSHAFLFAGPRGTGKTSCAKIFAKALNCLN 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
               G    +  +  A  +     D++ ID      +  +  I +++ Y   +      +
Sbjct: 67  LQD-GEPCNECENCKAADSGAMP-DIIEIDAASNNGVDEIREIRDKVKYAPTQGKYKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT +  +   +  R            ++L
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRI-SKQNL 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              ++   +   +   ++A   IA  + G  R +  +L ++  F +          I   
Sbjct: 184 VDRMKFILEQEDIPYENQALQVIAQVADGGMRDSLSILDQLLSFEKEKVEYKDALNITGY 243

Query: 249 ALLRLAIDKMGFDQLDLRY---LTMIARNFGGGPVGIETISAGLSEPRDA 295
           A  R A +++  + L+ +    L +  +    G      +S  +S   + 
Sbjct: 244 A-AREATEQLFLNLLNQKVSESLELSHKLLQDGATAKNLLSELISLATET 292


>gi|66362378|ref|XP_628153.1| katanin p60/fidgetin family AAA ATpase [Cryptosporidium parvum Iowa
           II]
 gi|46227615|gb|EAK88550.1| katanin p60/fidgetin family AAA ATpase [Cryptosporidium parvum Iowa
           II]
          Length = 462

 Score = 66.6 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 46/207 (22%), Positives = 84/207 (40%), Gaps = 16/207 (7%)

Query: 26  TLEEFTGQVEACSNLK-------VFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           + ++  G  +A ++LK        F E  + + +    +L  GPPG GKT LA+  A E+
Sbjct: 133 SWDDIIGLEQAKTSLKEAVILPAKFPELFQGKLKPWKGILLYGPPGTGKTFLAKACATEM 192

Query: 79  GVNFRSTSGPVIAKA------GDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAME 130
              F S S   +           + AL     +R   ++FIDEI  L     E    A  
Sbjct: 193 KGTFLSISSADLTSKWQGESEKLIKALFDVARERAPSIIFIDEIDSLCSSRNEQENEATR 252

Query: 131 DFQLDLMV-GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
             + + +V  +G ++ S   N     ++  T     + + ++ RF   I +   + E   
Sbjct: 253 RIKTEFLVQMDGVNSNSNNNNFKPILVLGTTNIPWEIDSGIRRRFERRIYIPLPDEESRV 312

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSR 216
            +++ G K    ++ D+    IA  + 
Sbjct: 313 LLIKNGLKSINHSLIDDDINYIAKMTH 339


>gi|302530936|ref|ZP_07283278.1| DNA polymerase III gamma and tau [Streptomyces sp. AA4]
 gi|302439831|gb|EFL11647.1| DNA polymerase III gamma and tau [Streptomyces sp. AA4]
          Length = 687

 Score = 66.6 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 75/235 (31%), Gaps = 27/235 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T  E  GQ      L+  + A +         LF GP G GKT+ A+++AR
Sbjct: 4   ALYRKYRPATFAEVVGQEHVTEPLRTALAAGRINHAY----LFSGPRGCGKTSSARIMAR 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR----DVLFID-----EIHRLSIIVEEILYP 127
            L        GP     G+  +      +     DV  +D      +     + ++  Y 
Sbjct: 60  SLNC----AQGPTPDPCGECNSCRALAPEGPGSVDVTELDAASHGGVDDARELRDKAFYA 115

Query: 128 AMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
             E      ++ E             + V+        I ATT    +   ++ R     
Sbjct: 116 PAESRYRVFIIDEAHMVTTQGFNALLKIVEEPPEHLIFIFATTEPDKVLTTIRSR-THHY 174

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                    ++ +++R     G  V       +     G+ R    +L ++   A
Sbjct: 175 PFRLIPPSSMRELLERNVAAEGATVEPAVYPLVIRAGGGSARDTQSVLDQLLAGA 229


>gi|95928309|ref|ZP_01311057.1| DNA polymerase III, subunits gamma and tau [Desulfuromonas
           acetoxidans DSM 684]
 gi|95135580|gb|EAT17231.1| DNA polymerase III, subunits gamma and tau [Desulfuromonas
           acetoxidans DSM 684]
          Length = 597

 Score = 66.6 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 47/251 (18%), Positives = 75/251 (29%), Gaps = 53/251 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ      L   I + +         LF G  G+GKT+ A+++A+ L    
Sbjct: 11  RPQTFADLVGQEHVSRTLANAIASGRVHHA----FLFTGARGVGKTSAARILAKALNCEN 66

Query: 83  ------------------------RSTSGPVIAKAGDLAALLTNLE------DRDVLFID 112
                                       G       D+  L   L          +  ID
Sbjct: 67  GPSAEPCNQCQHCEEISSGHSVDVFEIDGASNTGVDDVRELRETLRYMPSQCRYKIFIID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LSI     L   +E+                         I ATT    +   +  
Sbjct: 127 EVHMLSINAFNALLKTLEE------------------PPEHVKFIFATTEPHKIPVTILS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R            + +   ++R      + ++D A   IA R  G+ R +   L +V  F
Sbjct: 169 RCQRFDFRKIPAPKVVAQ-LRRIVDAENITISDRALALIAQRGGGSMRDSLSTLDQVVAF 227

Query: 233 AEVAHAKTITR 243
                A    +
Sbjct: 228 CSEQVADEDVQ 238


>gi|322417711|ref|YP_004196934.1| DNA polymerase III subunits gamma and tau [Geobacter sp. M18]
 gi|320124098|gb|ADW11658.1| DNA polymerase III, subunits gamma and tau [Geobacter sp. M18]
          Length = 575

 Score = 66.6 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 51/309 (16%), Positives = 95/309 (30%), Gaps = 47/309 (15%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN- 81
           RP+T  +  GQ      LK  I+  +         LF G  G+GKT+ A+++A+ L    
Sbjct: 11  RPQTFSDLVGQEHVSQTLKNAIDGGRVAHA----FLFTGARGVGKTSSARILAKALNCES 66

Query: 82  -----------------------FRSTSGPVIAKAGDLAALLTNLE------DRDVLFID 112
                                       G       D+  L  N++         +  ID
Sbjct: 67  GLTVEPCNSCSTCLEITDGNSVDVFEIDGASNTGVDDIRELRDNIKYLPSRSRYKIFIID 126

Query: 113 EIHRLSIIVEEILYPAMED--FQLDLMVGEGPSARSVKINLSRFTLIAATTRV-GLLTNP 169
           E+H L+      L   +E+    +  +       +     LSR             + + 
Sbjct: 127 EVHMLTTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFDFKRIALPRIVSR 186

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           L  R+ +         E L  + ++G      +++          +  +      LL  V
Sbjct: 187 L--RYIVDQEGVQVSDEALSVVARKGDGSMRDSLSTLDQVLAFCGNSVSDADVAALLGVV 244

Query: 230 RDFAEVAHAKTITREIADAALLRLAI-DKMGFDQLDLRYLTMIARNFGGGPVGIETISAG 288
                +   +++       AL  +A  D  G+     ++   +   F         I   
Sbjct: 245 DRRLIMEGCRSVLEADLRGALGIVARVDSFGYSM--RQFCHELIDQFRNA-----AILKA 297

Query: 289 LSEPRDAIE 297
           + EP D +E
Sbjct: 298 VGEPGDLLE 306


>gi|194859928|ref|XP_001969482.1| GG10129 [Drosophila erecta]
 gi|190661349|gb|EDV58541.1| GG10129 [Drosophila erecta]
          Length = 332

 Score = 66.6 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 73/239 (30%), Gaps = 39/239 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP  L++     E  S +  FI       + L H+LF GPPG GKT+     AR
Sbjct: 12  PWVEKYRPSGLDDLISHEEIISTITRFIS-----RKQLPHLLFYGPPGTGKTSTILACAR 66

Query: 77  ------ELGVNFRSTSGPVIAKAGDLA-ALLTNLEDRDVLF-------IDEIHRLSIIVE 122
                 +        +       G +   +L     R +         +DE   ++   +
Sbjct: 67  QLYSPQQFKSMVLELNASDDRGIGIVRGQILNFASTRTIFCDTFKLIILDEADAMTNDAQ 126

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             L   +E +                              +  +   LQ R     R   
Sbjct: 127 NALRRIIEKYT------------------DNVRFCVICNYLSKIIPALQSRC-TRFRFAP 167

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR-RVRDFAEVAHAKT 240
              + +   +++  +   + +TD+    +   ++G  R    +L+  V  F  V     
Sbjct: 168 LSQDQMMPRLEKIIEAEAVQITDDGKRALLTLAKGDMRKVLNVLQSTVMAFDTVNEDNV 226


>gi|320104515|ref|YP_004180106.1| DNA polymerase III subunits gamma and tau [Isosphaera pallida ATCC
           43644]
 gi|319751797|gb|ADV63557.1| DNA polymerase III, subunits gamma and tau [Isosphaera pallida ATCC
           43644]
          Length = 662

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 47/276 (17%), Positives = 90/276 (32%), Gaps = 31/276 (11%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP++  +  GQ          +  A          LF G  G+GKT++A++ A+  
Sbjct: 25  ARRYRPQSFADVVGQDHVV----RALSNAIIHHRVTHAYLFCGTRGVGKTSMARIFAK-- 78

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHR-----LSIIVEEILYPAMEDFQ 133
            +N          +  D+   ++  +D DV+ ID         +  + +           
Sbjct: 79  CLNCERGPTVEPCQVCDICRAISVGQDVDVIEIDGASNNGVDAVRELRQNAGLRPSRARY 138

Query: 134 LDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
               + E             ++++        I ATT    +   +  R           
Sbjct: 139 KIYYIDEVHMLTTGAFNALLKTLEEPPEHVKFIFATTEAHKIPITVLSRCQ-RYDFASIT 197

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            + ++  +    +  G+A   EA   +A R+ G+ R A  LL ++           +T E
Sbjct: 198 PDTIQQSLAAICQREGIAAESEALRVVARRASGSMRDAQSLLEQLLSS----GQSPLTVE 253

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV 280
           +    L          D+L L  L  +A    G  +
Sbjct: 254 MVHQLLGTPD------DELTLEILDALAGQRAGEAL 283


>gi|313678825|ref|YP_004056565.1| DNA polymerase III subunits gamma and tau [Mycoplasma bovis PG45]
 gi|312950809|gb|ADR25404.1| DNA polymerase III, gamma and tau subunit [Mycoplasma bovis PG45]
          Length = 616

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 68/220 (30%), Gaps = 47/220 (21%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     RP+  ++  GQ      LK  I     R   + H  LF GP G+GKT++A++ A
Sbjct: 5   ALYRKYRPKCFDDVKGQDYIIQTLKNII-----RNRKVSHAYLFCGPRGVGKTSVARIFA 59

Query: 76  RELGVNFR----------------------STSGPVIAKAGDLAALLTN------LEDRD 107
             +                                       +  L           +  
Sbjct: 60  NLINCYHNNDDYTKLCPLCAENENKTIDIIEMDAASNNGVDSIRELRDKIQHLPSAGNYK 119

Query: 108 VLFIDEIHRLSIIVEEILYPAMED---FQLDLMVG----EGPSARSVKINLSRFTLIAAT 160
           +  IDE+H LS      L   +E+     + +       + P     ++    F  +   
Sbjct: 120 IYIIDEVHMLSKGAFNALLKTLEEPPAHAIFIFATTDPQKIPLTILSRVQRFNFRRMNND 179

Query: 161 TRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
           T V  + N L+   GI      Y+ E L  I +  A    
Sbjct: 180 TLVSQIKNILEQE-GIR-----YDEESLPYIARLAAGSMR 213


>gi|270291184|ref|ZP_06197407.1| DNA polymerase III subunit gamma/tau [Pediococcus acidilactici 7_4]
 gi|270280580|gb|EFA26415.1| DNA polymerase III subunit gamma/tau [Pediococcus acidilactici 7_4]
          Length = 578

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 65/302 (21%), Positives = 112/302 (37%), Gaps = 38/302 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+   +  GQ      LK     A    +     LF GP G GKT+ A++ A+ +  ++
Sbjct: 11  RPQKFADMVGQEVVTRTLK----NALITKQTSHAYLFTGPRGTGKTSAAKIFAKAVNCHY 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
               G    +     A+ T+    DV+ ID      +  +  I ++  Y   E      +
Sbjct: 67  L-KDGEPCNECATCRAI-TDGNLNDVIEIDAASNNGVEEIRDIRDKAKYAPTEADYKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++   +    I ATT    +   +  R            +  
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPTNVIFILATTEPQKIPLTIISRTQRFDFKRITPTQSY 184

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             +V    +  G+    +A   IA  + G  R A  +L +V  F         T  + +A
Sbjct: 185 DRMV-YILEQKGIEYDPKALSIIAKAAEGGMRDALSILDQVISF------GNETVTMDNA 237

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRD---AIEDLI--EPY 303
            L+  ++++   DQ    YLT I       P  +ET+   L E +D    IEDLI  E  
Sbjct: 238 LLVTGSVNQQLLDQ----YLTQIFE--KDTPAALETLHQILDEGKDGQRLIEDLIAVERN 291

Query: 304 MI 305
           ++
Sbjct: 292 LL 293


>gi|225075134|ref|ZP_03718333.1| hypothetical protein NEIFLAOT_00134 [Neisseria flavescens
           NRL30031/H210]
 gi|224953618|gb|EEG34827.1| hypothetical protein NEIFLAOT_00134 [Neisseria flavescens
           NRL30031/H210]
          Length = 666

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 80/259 (30%), Gaps = 59/259 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T  +  GQ      L+  ++  +     L H  L  G  G+GKTT+A+++A+ L   
Sbjct: 11  RPKTFADLVGQEHVVKALRNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCE 65

Query: 82  FRS------------------------TSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                                ++  +L N +         V  I
Sbjct: 66  NAVHGEPCGQCESCTQIDSGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYII 125

Query: 112 DEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+H LS      +   +E+    +  ++      +     LSR                
Sbjct: 126 DEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPITVLSRCLQ------------- 172

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
               F +         E L  ++ R      +    +A   +   + G+ R A  LL + 
Sbjct: 173 ----FVLRNMTTQQVAEHLAHVLDR----ENVPYQPQALQLLGRAAAGSMRDALSLLDQA 224

Query: 230 RDFAEVAHAKTITREIADA 248
                   A+   R++  A
Sbjct: 225 IAMGSGKVAEQDVRQMIGA 243


>gi|157123250|ref|XP_001660080.1| replication factor c / DNA polymerase iii gamma-tau subunit [Aedes
           aegypti]
 gi|108874432|gb|EAT38657.1| replication factor c / DNA polymerase iii gamma-tau subunit [Aedes
           aegypti]
          Length = 330

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 55/164 (33%), Gaps = 21/164 (12%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           ++       +   RP TL +     E  S +  FI+      E L H+LF GPPG GKT+
Sbjct: 3   KDGKSNLPWVEKYRPATLSDLISHEEIISTINKFIQ-----EEQLPHLLFYGPPGTGKTS 57

Query: 70  LAQVVARE------LGVNFRSTSGPVIAKAGDLA-ALLTNLEDRDVL-------FIDEIH 115
                AR+              +         +   +L     R +         +DE  
Sbjct: 58  TILACARQLYKPQSFNQMVLELNASDDRGINIVRNQILNFASTRTIFSGGYKLIILDEAD 117

Query: 116 RLSIIVEEILYPAMEDFQ--LDLMVGEGPSARSVKINLSRFTLI 157
            ++   +  L   +E +   +   +     ++ +    SR T  
Sbjct: 118 AMTNDAQNALRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTRF 161


>gi|54298738|ref|YP_125107.1| DNA polymerase III, gamma and tau subunits [Legionella pneumophila
           str. Paris]
 gi|53752523|emb|CAH13955.1| DNA polymerase III, gamma and tau subunits [Legionella pneumophila
           str. Paris]
          Length = 556

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 84/229 (36%), Gaps = 23/229 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPRT  +  GQ       K  I A   +   L H  LF G  G+GKT++A+++A+ L   
Sbjct: 11  RPRTFSQLVGQEHI---NKALINALNQQ--RLHHAYLFTGTRGVGKTSVARILAKALNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLD 135
              TS P +    D    +      D++ ID   +  +     L       P    F++ 
Sbjct: 66  KGITSEPCLHC--DTCVAIEQGRYIDLIEIDGASKTRVEDTRDLLDNIQYAPTNGRFKIY 123

Query: 136 LM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           L+               ++++   S    I ATT    L   +  R  +   L     E 
Sbjct: 124 LIDEVHMLSQHSFNALLKTLEEPPSHVKFILATTDPQKLPVTVLSRC-LQFNLKHLPAEL 182

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
           +   +Q   +   L    +A   +A  +RG+ R A  LL +     E  
Sbjct: 183 INQQLQLILQEERLDFEIQALDILAQAARGSMRDALSLLDQAITSCETK 231


>gi|322516676|ref|ZP_08069588.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus
           vestibularis ATCC 49124]
 gi|322124793|gb|EFX96225.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus
           vestibularis ATCC 49124]
          Length = 550

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 55/258 (21%), Positives = 92/258 (35%), Gaps = 27/258 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     R +T  E  GQ    + L+  +E+ K         LF GP G GKT+ A++ A+
Sbjct: 4   ALYRKYRSQTFGEMVGQKVISTTLRQAVESGKISHAY----LFSGPRGTGKTSAAKIFAK 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +    +    P      D+   +TN    DV+ ID      +  +  I ++  Y     
Sbjct: 60  AMNCPNQVDGEPCNHC--DICRDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRA 117

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQD---RFGIPIR 179
                ++ E             ++++        I ATT +  +   +     RF     
Sbjct: 118 TYKVYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSI 177

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
                 E L +I++      GL   DEA   IA R+ G  R A  +L +    +   H  
Sbjct: 178 KQGAIKEHLASILE----KEGLTFDDEALTIIARRAEGGMRDALSILDQALSLSPDNHVS 233

Query: 240 TITREIADAALLRLAIDK 257
               E    ++   A+D 
Sbjct: 234 QAVAEEITGSIGLTALDS 251


>gi|238020685|ref|ZP_04601111.1| hypothetical protein GCWU000324_00575 [Kingella oralis ATCC 51147]
 gi|237867665|gb|EEP68671.1| hypothetical protein GCWU000324_00575 [Kingella oralis ATCC 51147]
          Length = 820

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 63/208 (30%), Gaps = 40/208 (19%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ      L    + A A        L  G  G+GKTT+A+++A+ L    
Sbjct: 11  RPKTFADLVGQQHVVKAL----QNALANGRLHHAYLLTGTRGVGKTTIARILAKSLNCEN 66

Query: 83  RS------------------------TSGPVIAKAGDLAALLTNLE------DRDVLFID 112
                                               ++  +L N +         V  ID
Sbjct: 67  AQHGEPCGHCATCQAIDAGRFVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIID 126

Query: 113 EIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           E+H LS      +   +E+    +  ++      +     LSR   +            +
Sbjct: 127 EVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPITVLSRCLQLVLRNMTA---QQV 183

Query: 171 QDRFGIPIRLNFYEIEDLK-TIVQRGAK 197
            D     +       E    T++ R A+
Sbjct: 184 SDHLAHVLNAEHIAYEPAALTLLGRAAQ 211


>gi|161870312|ref|YP_001599482.1| DNA polymerase III subunits gamma and tau [Neisseria meningitidis
           053442]
 gi|161595865|gb|ABX73525.1| DNA polymerase III tau and gamma subunit [Neisseria meningitidis
           053442]
          Length = 706

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 50/303 (16%), Positives = 90/303 (29%), Gaps = 63/303 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T  +  GQ      L+  ++  +     L H  L  G  G+GKTT+A+++A+ L   
Sbjct: 11  RPKTFADLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCE 65

Query: 82  FRS------------------------TSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                                ++  +L N +         V  I
Sbjct: 66  NAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYII 125

Query: 112 DEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+H LS      +   +E+    +  ++      +     LSR                
Sbjct: 126 DEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPITVLSRCLQFVLRNM------- 178

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
                           + +   +        +A    A   +   + G+ R A  LL + 
Sbjct: 179 --------------TSQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQA 224

Query: 230 RDFAEVAHAKTITREIADAALLRLAIDKM-GFDQLDLRYLTMIARNFGGGPVGIETISAG 288
                   A+   R++  A   +   + + G    D   LT  A+      VG +     
Sbjct: 225 IALGSGKVAENDVRQMIGAVDKQYLYELLTGIINQDGAALTAKAQEMAACAVGFDN---A 281

Query: 289 LSE 291
           L E
Sbjct: 282 LGE 284


>gi|148361067|ref|YP_001252274.1| DNA polymerase III subunits gamma and tau [Legionella pneumophila
           str. Corby]
 gi|296108398|ref|YP_003620099.1| DNA polymerase III subunit gamma/tau [Legionella pneumophila
           2300/99 Alcoy]
 gi|148282840|gb|ABQ56928.1| DNA polymerase III subunits gamma and tau [Legionella pneumophila
           str. Corby]
 gi|295650300|gb|ADG26147.1| DNA polymerase III subunit gamma/tau [Legionella pneumophila
           2300/99 Alcoy]
          Length = 556

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 84/229 (36%), Gaps = 23/229 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPRT  +  GQ       K  I A   +   L H  LF G  G+GKT++A+++A+ L   
Sbjct: 11  RPRTFSQLVGQEHI---NKALINALNQQ--RLHHAYLFTGTRGVGKTSVARILAKALNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLD 135
              TS P +    D    +      D++ ID   +  +     L       P    F++ 
Sbjct: 66  KGITSEPCLHC--DTCVAIEQGRYIDLIEIDGASKTRVEDTRDLLDNIQYAPTNGRFKIY 123

Query: 136 LM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           L+               ++++   S    I ATT    L   +  R  +   L     E 
Sbjct: 124 LIDEVHMLSQHSFNALLKTLEEPPSHVKFILATTDPQKLPVTVLSRC-LQFNLKHLPAEL 182

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
           +   +Q   +   L    +A   +A  +RG+ R A  LL +     E  
Sbjct: 183 INQQLQLILQEERLDFEIQALDILAQAARGSMRDALSLLDQAITSCETK 231


>gi|254464305|ref|ZP_05077716.1| DNA polymerase III, tau subunit [Rhodobacterales bacterium Y4I]
 gi|206685213|gb|EDZ45695.1| DNA polymerase III, tau subunit [Rhodobacterales bacterium Y4I]
          Length = 601

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 61/306 (19%), Positives = 105/306 (34%), Gaps = 31/306 (10%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           SQ        RP T  +  GQ      LK    A +         +  G  G GKTT A+
Sbjct: 15  SQYQVLARKYRPETFADLVGQDAMVRTLKNAFAADRIAQA----FIMTGIRGTGKTTTAR 70

Query: 73  VVARELGVNFRSTS-GPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEIL---- 125
           ++A+ +         GP     G        +E R  DV+ +D   R  +     +    
Sbjct: 71  IIAKGMNCVGEDGQGGPTTDPCGKCEHCTAIMEGRHVDVMEMDAASRTGVNDIREIIDSV 130

Query: 126 -YPAMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
            Y A        ++ E             ++++   +    I ATT +  +   +  R  
Sbjct: 131 QYRAASARYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLSRCQ 190

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
               L   E E + +++++ A   G  + D+A   I   + G+ R A  LL    D A  
Sbjct: 191 -RFDLRRIEPEVMISLLRKIATAEGAQIADDALALITRAAEGSARDATSLL----DQAIS 245

Query: 236 AHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDA 295
             A   T +   A L      ++  D +D     ++  +       +    A  ++P   
Sbjct: 246 HGAGETTADQVRAMLGLADRGRV-LDLMD----MILRGDAAAALTELSAQYAEGADPLAV 300

Query: 296 IEDLIE 301
           + DL E
Sbjct: 301 LRDLAE 306


>gi|332160791|ref|YP_004297368.1| DNA polymerase III subunits gamma and tau [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|318604677|emb|CBY26175.1| DNA polymerase III subunits gamma and tau [Yersinia enterocolitica
           subsp. palearctica Y11]
 gi|325665021|gb|ADZ41665.1| DNA polymerase III subunits gamma and tau [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330863114|emb|CBX73244.1| DNA polymerase III subunit tau [Yersinia enterocolitica W22703]
          Length = 656

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 87/244 (35%), Gaps = 29/244 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+ L    
Sbjct: 11  RPKTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCET 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILY------PAMEDFQL 134
             T+ P     G  A  L   + R  D++ ID   R  +     L       PA   F++
Sbjct: 67  GITATP----CGTCANCLEIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKV 122

Query: 135 DLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            L+               ++++   +    + ATT    L   +  R  +   L   ++E
Sbjct: 123 YLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRC-LQFHLKVIDVE 181

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
            ++  +++      +     A   +A  + G+ R A  L     D A       +T    
Sbjct: 182 VIRAQLEKILLAEQINSDARALQLLARAADGSMRDALSL----ADQAIAMGDGHVTTATV 237

Query: 247 DAAL 250
              L
Sbjct: 238 SQML 241


>gi|158321874|ref|YP_001514381.1| DNA polymerase III subunits gamma and tau [Alkaliphilus oremlandii
           OhILAs]
 gi|158142073|gb|ABW20385.1| DNA polymerase III, subunits gamma and tau [Alkaliphilus oremlandii
           OhILAs]
          Length = 563

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 50/232 (21%), Positives = 86/232 (37%), Gaps = 21/232 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP+  E+  GQ +  + LK  I ++          LF G  G GKT+ A++ AR
Sbjct: 5   ALYRRFRPKVFEDVIGQDQVITILKNQISSSNIAHAY----LFTGTRGTGKTSTAKIFAR 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +       + P   +      +LT     DV+ ID      +  +  I E + YP  + 
Sbjct: 61  AVNCLSAEDANP-CNQCEVCEGILTE-NIMDVIEIDAASNNGVDNVREIRENVKYPPSKG 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++   S    I ATT    +   +  R         
Sbjct: 119 KYKIYIIDEVHMLSTGAFNALLKTLEEPPSYVIFILATTEPHKIPATILSRCQ-RFDFKP 177

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
             I D+   ++   +  G+   +EA   IA+ S G  R A  +L +   + E
Sbjct: 178 VRINDIMKRLESICEDIGIKTEEEALRLIALNSDGALRDALSILEQCISYTE 229


>gi|301058434|ref|ZP_07199455.1| DNA polymerase III, subunit gamma and tau [delta proteobacterium
           NaphS2]
 gi|300447490|gb|EFK11234.1| DNA polymerase III, subunit gamma and tau [delta proteobacterium
           NaphS2]
          Length = 564

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 44/252 (17%), Positives = 82/252 (32%), Gaps = 53/252 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV-- 80
           RP+  E+  GQ      L   I+  +         +F GP G+GKT++A++ A+ +    
Sbjct: 11  RPQVFEDVIGQEHITQTLVNAIKTGRLAHAY----IFGGPRGVGKTSVARIFAKAINCAE 66

Query: 81  ----------------------NFRSTSGPVIAKAGDLAALLTNLE------DRDVLFID 112
                                 + +   G       ++  L  +           +  ID
Sbjct: 67  GEPGIPCNRCRSCREITEGNSVDVQEIDGASNRGIDEIRELRESARYMPSASRYRIYVID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H L++     L   +E+                         I ATT    +   +  
Sbjct: 127 EVHMLTLPAFNALLKTLEE------------------PPPHVKFIFATTESHKVPITILS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R           ++ +   +++ +   G+A+   A   IA  + G+ R A  LL +V  F
Sbjct: 169 RCQ-RFDFKRIALQKIVAYLEKISGHEGVAIGTTALAMIAREAEGSMRDAESLLDQVVSF 227

Query: 233 AEVAHAKTITRE 244
           A    +     E
Sbjct: 228 AGDKVSDDQVPE 239


>gi|258650897|ref|YP_003200053.1| DNA polymerase III subunits gamma and tau [Nakamurella multipartita
           DSM 44233]
 gi|258554122|gb|ACV77064.1| DNA polymerase III, subunits gamma and tau [Nakamurella
           multipartita DSM 44233]
          Length = 743

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 51/261 (19%), Positives = 85/261 (32%), Gaps = 23/261 (8%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T  E  GQ      L+  + A +         LF GP G GKT+ A+++AR
Sbjct: 4   ALYRKYRPATFAEVVGQEHVTQPLRTALAAGRVNHAY----LFSGPRGCGKTSSARILAR 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            L      T  P       +A         DV+ +D      +     + +   Y   E 
Sbjct: 60  SLNCVHGPTPDPCGECPSCIALAPEGPGSLDVVELDAASHGGVDDTRDLRDRAFYMPAES 119

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             + V+        I ATT    +   ++ R         
Sbjct: 120 RYRVFIIDEAHMVTTQGFNALLKIVEEPPEHLVFIFATTEPDKVLTTIRSR-THHYPFRL 178

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH----A 238
                L+T+++R  +  G  V       +     G+ R    +L ++   A        +
Sbjct: 179 IAPSVLRTMLERLCEQEGAVVEPAVLPLVIRAGGGSARDTLSMLDQLLAGAGPEGVTYRS 238

Query: 239 KTITREIADAALLRLAIDKMG 259
                 + DAALL   +D + 
Sbjct: 239 AVALLGVTDAALLDEVVDALA 259


>gi|150399940|ref|YP_001323707.1| ATPase central domain-containing protein [Methanococcus vannielii
           SB]
 gi|150012643|gb|ABR55095.1| AAA ATPase central domain protein [Methanococcus vannielii SB]
          Length = 371

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 52/265 (19%), Positives = 101/265 (38%), Gaps = 17/265 (6%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKV---FIEAAKARAE-ALDH 56
           ++ ++ L     S +       R  + EE  GQ EA    K+   ++E  +   E A  +
Sbjct: 99  IITKDTLFKLENSLDKQKNPKFRETSFEEVIGQFEAKKKCKIIIKYLENPEIFGEWAPKN 158

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--V 108
           +LF GPPG GKT LA+ +A E  V         +        +  + +L     +    +
Sbjct: 159 ILFYGPPGTGKTLLARALATETDVPLYLIKATELIGDHVGDGSKQIQSLYEEALENAPCI 218

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +FIDE+  +++  +           ++ ++ E    +S +        IAAT    +L +
Sbjct: 219 IFIDELDAIALSRQFQSLRGDVSEVVNALLTELDGIKSNEG----IVTIAATNNPEMLDS 274

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPR-IAGRLLR 227
            ++ RF   I     +  +   I++  A+   +++       +        R I  + L+
Sbjct: 275 AIRSRFEEEIEFKMPDDSERLKIMELYAEKMPISLNVNFKKYVEKTKNMNGRTIKEKFLK 334

Query: 228 RVRDFAEVAHAKTITREIADAALLR 252
                A +    TI     D  L +
Sbjct: 335 PALHKAILEDRDTIEEADLDEVLKK 359


>gi|121703562|ref|XP_001270045.1| DNA replication factor C subunit  Rfc4, putative [Aspergillus
           clavatus NRRL 1]
 gi|119398189|gb|EAW08619.1| DNA replication factor C subunit Rfc4, putative [Aspergillus
           clavatus NRRL 1]
          Length = 352

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 44/243 (18%), Positives = 78/243 (32%), Gaps = 39/243 (16%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   +   RP  L++  G  E    LK+      A+   + HV+  G PG+GKTT    +
Sbjct: 27  ELPWVEKYRPIFLDDIVGNTETVERLKII-----AKDGNMPHVIISGMPGIGKTTSVLCL 81

Query: 75  AR------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIHRLSII 120
           AR            EL  +       V  +    A     L      ++ +DE   ++  
Sbjct: 82  ARQLLGDAYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRHKIVILDEADSMTPG 141

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            ++ L   ME +                   S      A  +   +  PLQ R  I    
Sbjct: 142 AQQALRRTMEIYS------------------STTRFAFACNQSNKIIEPLQSRCAILRYA 183

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD-FAEVAHAK 239
              + + ++  +++      +  T++    +   + G  R A   L+     F  V    
Sbjct: 184 RLTDAQVVQR-LKQICDAEKVEHTEDGIAALVFSAEGDMRQAINNLQSTWSGFGLVNGDN 242

Query: 240 TIT 242
              
Sbjct: 243 VFR 245


>gi|23271821|gb|AAH23674.1| Rfc5 protein [Mus musculus]
          Length = 333

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 72/218 (33%), Gaps = 38/218 (17%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA------RE 77
           P+TL +     +  S ++ FI       + L H+L  GPPG GKT+     A      +E
Sbjct: 21  PQTLADLISHQDILSTIQKFIS-----EDRLPHLLLYGPPGTGKTSTILACAKQLYKDKE 75

Query: 78  LGVNFRSTSGPVIAKAGDLAA-LLTNLEDRDVL-------FIDEIHRLSIIVEEILYPAM 129
            G      +         +   +L+    R +         +DE   ++   +  L   +
Sbjct: 76  FGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVI 135

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           E F       E      +   LS+                LQ R     R      E + 
Sbjct: 136 EKF------TENTRFCLICNYLSKIIP------------ALQSRC-TRFRFGPLTPELMV 176

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             ++   +   + ++++    +   S G  R A  +L+
Sbjct: 177 PRLEHVVQEENVDISEDGMKALVTLSSGDMRRALNILQ 214


>gi|75812737|ref|YP_320354.1| ATPase [Anabaena variabilis ATCC 29413]
 gi|75705493|gb|ABA25165.1| ATPase [Anabaena variabilis ATCC 29413]
          Length = 429

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 59/328 (17%), Positives = 118/328 (35%), Gaps = 44/328 (13%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+TL E  GQ       +  I A   +  A  + LF GP G GKT+ A+++A+   +N 
Sbjct: 10  RPQTLSEVIGQEHIV---RTLINAIALQKIAPAY-LFSGPKGTGKTSTARIIAKS--LNC 63

Query: 83  RSTSGPVIAKAGDLAAL--LTNLEDRDVLFIDEIHRLSIIVEEIL-----YPAMEDFQLD 135
           +S++ P     G+  +   +T     DV  +D      + +   L     +  +E     
Sbjct: 64  QSSNEPTTKPCGECNSCKGITASSSVDVTELDAASNSGVELIRELISTIQFAPVEGRFKI 123

Query: 136 LMVGEG---------PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             ++++        I  TT +  +   +  R           + 
Sbjct: 124 FIIDECHALSSQSWQALLKTIESPPRHVVFIFCTTELHKVPETIVSRCQ-KFDFKRVPVS 182

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
            + + +++ +    + +   A   +A  ++G  R + +LL ++    E         E++
Sbjct: 183 LVASYLEQISHQESINIAPSAVTAVAKANKGHLRDSLKLLDQLTLLGEEEITSNWVWELS 242

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGG---GPVGIETISAGLSEPRDAIEDLIEPY 303
                          + D   LT       G   G +GI        +   AI   +  +
Sbjct: 243 GT-----------ISEYD--LLTACENIIKGEITGNLGILQDWIESGKQPTAIHTSLVSF 289

Query: 304 MIQQGFIQRT-PRGRLLMPI---AWQHL 327
           + +   + +T P GR L  +    W+ L
Sbjct: 290 L-KDLLVCKTNPNGRHLTQLEEDTWEKL 316


>gi|308185942|ref|YP_003930073.1| DNA polymerase III, tau and gamma subunits [Pantoea vagans C9-1]
 gi|308056452|gb|ADO08624.1| DNA polymerase III, tau and gamma subunits [Pantoea vagans C9-1]
          Length = 689

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 55/306 (17%), Positives = 104/306 (33%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+   +  GQ    + L        +        LF G  G+GKTT+A+++A+  G+N 
Sbjct: 11  RPQAFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTTIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGQCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++   S    + ATT    L   +  R  +   L   +++ +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPSHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVDQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++   K   +     A   +A  + G+ R A  L     D A       +T      
Sbjct: 184 RQQLEHVLKQEQIESETRALQLLARAADGSMRDALSL----TDQAIAMGQGAVTSSTVSV 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L       D+  L  L  +    G   + + + +A      +A+   +   + Q  
Sbjct: 240 MLGTLD------DEQPLGLLEALVDGNGQQVMNLLSQAASRGVEWEALLVEMLRLLHQIA 293

Query: 309 FIQRTP 314
            +Q  P
Sbjct: 294 MVQLLP 299


>gi|261402851|ref|YP_003247075.1| Replication factor C [Methanocaldococcus vulcanius M7]
 gi|261369844|gb|ACX72593.1| Replication factor C [Methanocaldococcus vulcanius M7]
          Length = 544

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 33/129 (25%), Positives = 56/129 (43%), Gaps = 11/129 (8%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK--TTLAQ 72
           E   +   RP+TL++  GQ E    LK ++E      +++ H+LF GPPG+GK  T   +
Sbjct: 2   EKPWVEKYRPKTLDDIVGQDEIVKRLKKYVE-----KKSMPHLLFSGPPGVGKCLTGDTK 56

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           V+            G V+ K  +     T   +  VL IDE  ++     + +Y    + 
Sbjct: 57  VIVN----GKIREIGDVVEKISNGKFGATLTNNLKVLGIDEDGKIREFDVQYVYKDKTNT 112

Query: 133 QLDLMVGEG 141
            + +    G
Sbjct: 113 LIKIKTKMG 121



 Score = 43.9 bits (102), Expect = 0.035,   Method: Composition-based stats.
 Identities = 45/238 (18%), Positives = 84/238 (35%), Gaps = 38/238 (15%)

Query: 62  PPGLGKTTLAQVVARE-----LGVNFRSTSGPVIAKAGDLAALLTNLED--------RDV 108
           P  L  TT A  +AR+        NF   +         +   + +             +
Sbjct: 272 PTILHNTTAALCLARDLFGENWRDNFLELNASDERGIDVIRTKVKDFARTKPIGDVPFKI 331

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +F+DE   L+   +  L   ME +                 +++RF  I +      +  
Sbjct: 332 IFLDESDALTADAQNALRRTMEKYS----------------DVARF--ILSCNYPSKIIP 373

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
           P+Q R  I  R +  + ED+   ++  A+  GL +T+     I   S G  R A  +L+ 
Sbjct: 374 PIQSRCAI-FRFSPLKKEDIAKKLKEIAEKEGLNLTESGLDAIIYVSEGDMRKAINVLQT 432

Query: 229 VRDFAEVAHAK------TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV 280
               ++V   +      +  R      ++ LA++    +  DL Y  M+     G  +
Sbjct: 433 AAALSDVIDDEIVYKVSSRARPEEVKKMMELALNGKFIEARDLLYKLMVEWGMSGEDI 490


>gi|78211617|ref|YP_380396.1| DNA polymerase III, tau subunit [Synechococcus sp. CC9605]
 gi|78196076|gb|ABB33841.1| DNA-directed DNA polymerase [Synechococcus sp. CC9605]
          Length = 614

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 83/221 (37%), Gaps = 19/221 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  ++  GQ    + L   + + +         LF GP G GKT+ A+++AR L    
Sbjct: 13  RPQRFDQLVGQEAIAATLGHALTSNRIA----PAYLFSGPRGTGKTSSARILARSLNCLN 68

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P      +L   +      DV+ ID      +  +  ++E   +  ++      +
Sbjct: 69  SEGPTPEPCGTCELCTTIAAGTALDVIEIDAASNTGVDNIRELIERSRFAPVQARWKVYV 128

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           V E             ++++    +   + ATT    +   +  R           ++ L
Sbjct: 129 VDECHMLSTAAFNALLKTLEEPPPQVVFVLATTDPQRVLPTILSRCQ-RFDFRRIPLDAL 187

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
            T +   A+   + +  EA   +A RS+G  R A  LL ++
Sbjct: 188 NTHLSWIAEQEAIEIKPEAIHVVAQRSQGGLRDAESLLDQL 228


>gi|134046686|ref|YP_001098171.1| ATPase central domain-containing protein [Methanococcus maripaludis
           C5]
 gi|132664311|gb|ABO35957.1| AAA ATPase, central domain protein [Methanococcus maripaludis C5]
          Length = 371

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 45/190 (23%), Positives = 78/190 (41%), Gaps = 16/190 (8%)

Query: 25  RTLEEFTGQVEACSNLKVFI---EAAKARAE-ALDHVLFVGPPGLGKTTLAQVVARELGV 80
              EE  GQ++A    K+ I   E  +   E A  ++LF G PG GKT LA+ +A E  V
Sbjct: 123 TNFEEVIGQLDAKKKCKIVIKYLENPEIFGEWAPKNILFYGSPGTGKTMLARALATETEV 182

Query: 81  NFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDF 132
                    +        +  + +L  +  +    ++FIDE+  +++  +          
Sbjct: 183 PLYLIKATELIGDHVGDGSKQIESLYESASENTPCIIFIDELDAIALSRQFQSLRGDVSE 242

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            ++ ++ E      +K NL   T IAAT    LL   ++ RF   I     +  +   I+
Sbjct: 243 VVNALLTELDG---IKNNLGIVT-IAATNNPELLDTAVRSRFEEEIEFKMPDDGERLKIL 298

Query: 193 QRGAKLTGLA 202
           +  AK   + 
Sbjct: 299 ELYAKKMPIT 308


>gi|328868721|gb|EGG17099.1| AAA ATPase domain-containing protein [Dictyostelium fasciculatum]
          Length = 756

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 81/221 (36%), Gaps = 35/221 (15%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFT------------GQVEACSNLKVFIE----- 45
           D     S ++S     +  +RP ++ E              GQ +    LK  IE     
Sbjct: 455 DASSQFSVDLSDMMIAMEKIRPSSMREVIVEVPKVKWEDIGGQDDIKEKLKEAIEWPLKH 514

Query: 46  -AAKARA--EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDL 96
            AA  R        +L  GPPG  KT LA+ +A E G+NF +  GP +           +
Sbjct: 515 PAAFERMGIRPPKGILLYGPPGCSKTLLAKALATESGLNFIAVKGPELISKWVGESERAV 574

Query: 97  AALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRF 154
             +          +LF DE+  L+               ++ +V +  +       L+  
Sbjct: 575 RDIFKKARQNSPSILFFDEMDGLATER-----SGQGSGAIERVVSQLLTEMDGIQPLTNV 629

Query: 155 TLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQ 193
           T++AAT R  ++   +    R    + ++  + +  K I +
Sbjct: 630 TIVAATNRPDIIDKAILRAGRIDRILYISPPDQKARKEIFK 670



 Score = 46.6 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 12/102 (11%)

Query: 34  VEACSNLKVFIEAAKARA----EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPV 89
            E    L +  E  +       +    VL  GPPG GKT LA+ VA E G    + +G  
Sbjct: 227 KEIKEILSLAFEKREMLNRFGIKPPRGVLLYGPPGTGKTMLARTVASESGCTLFTMNGAD 286

Query: 90  IAKA------GDLAALLTNLEDR--DVLFIDEIHRLSIIVEE 123
           I           + ++  +   R   ++FIDE+  L    ++
Sbjct: 287 ILDKYYGVTEKAIQSIFRDAAQRAPSIIFIDELDALCPKRDQ 328


>gi|306833147|ref|ZP_07466277.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus bovis
           ATCC 700338]
 gi|304424721|gb|EFM27857.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus bovis
           ATCC 700338]
          Length = 559

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 47/255 (18%), Positives = 89/255 (34%), Gaps = 21/255 (8%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     R +T +E  GQ    S LK  + + K         LF GP G GKT+ A++ A+
Sbjct: 4   ALYRKYRSQTFDEMVGQTVISSTLKQAVSSGKISHAY----LFSGPRGTGKTSAAKIFAK 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +    +    P      D+   +TN    DV+ ID      +  +  I ++  Y     
Sbjct: 60  AMNCPNQVNGEPCNHC--DICRDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRA 117

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT +  +   +  R         
Sbjct: 118 TYKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQ-RFEFKA 176

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            ++  ++  +        ++  ++A   IA  + G  R A  +L +        H     
Sbjct: 177 IKLAAIREHLANILDKEEISYEEDALTLIAHCAEGGMRDALSILDQALSLTPDNHVSLAI 236

Query: 243 REIADAALLRLAIDK 257
            E    ++  +A+D 
Sbjct: 237 AEEITGSISMIALDD 251


>gi|323342245|ref|ZP_08082477.1| DNA polymerase III, gamma/tau subunit DnaX [Erysipelothrix
           rhusiopathiae ATCC 19414]
 gi|322463357|gb|EFY08551.1| DNA polymerase III, gamma/tau subunit DnaX [Erysipelothrix
           rhusiopathiae ATCC 19414]
          Length = 600

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 74/245 (30%), Gaps = 54/245 (22%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVAREL 78
              RP  L+E  GQ    + LK  I   K     + H  LF GP G GKT++A++ AR +
Sbjct: 8   RKYRPAHLDEVVGQEHVVNVLKNSITKNK-----ISHAYLFCGPRGTGKTSIAKLFARAV 62

Query: 79  GVNF-----------------------RSTSGPVIAKAGDLAALLTN------LEDRDVL 109
                                                  ++  L+        L    V 
Sbjct: 63  NCENPDQVICGTCDNCLAVADGTHPDLIEIDAASNNGVDEIRGLIEKVKYTPILGKYKVY 122

Query: 110 FIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
            IDE+H LS      L   +E+                    S    I ATT +  +   
Sbjct: 123 IIDEVHMLSQGAFNALLKTLEE------------------PPSHVVFILATTEIHKVLPT 164

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           +  R          E++ +   +        +      +  IA  S G  R A  +L + 
Sbjct: 165 IISRCQRYDFNRIGEVD-IAKRLDYVLNNENVEAEQGVSKLIASLSGGGLRNALTILEQA 223

Query: 230 RDFAE 234
              A+
Sbjct: 224 IVLAD 228


>gi|255552398|ref|XP_002517243.1| Mitochondrial respiratory chain complexes assembly protein AFG3,
           putative [Ricinus communis]
 gi|223543614|gb|EEF45143.1| Mitochondrial respiratory chain complexes assembly protein AFG3,
           putative [Ricinus communis]
          Length = 802

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 60/253 (23%), Positives = 96/253 (37%), Gaps = 29/253 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78
           T  +F GQ      L+  +   K   E  D        VL  GPPG GKT LA+ +A E 
Sbjct: 309 TFNDFAGQEYIKRELQEIVRILKNEEEFQDKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA 368

Query: 79  GVNFRSTSGP---------VIAKAGDLAALLTNLEDRDVLFIDEIHRL---SIIVEEILY 126
           G+ F + +G            ++  DL A   +     ++FIDEI  +       +    
Sbjct: 369 GLPFLAANGTDFVEMFVGVAASRVKDLFANARSFAP-SIIFIDEIDAIGSKRGGPDIGGG 427

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
            A  +  L  ++ E    +      S+  +I AT R+ +L   L    RF   IR+    
Sbjct: 428 GAEREQGLLQILTEMDGFKEFT---SQVLVIGATNRLDILDPALLRKGRFDKIIRVGLPS 484

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT---- 240
            +    I++  A+       +E    +   +  T    G  L+ + + A +  A+     
Sbjct: 485 KDGRLAILKVHARNKFFRSEEEKLVLLQEVAELTEDFTGAELQNILNEAGILTARKDLDY 544

Query: 241 ITREIADAALLRL 253
           I RE    AL R 
Sbjct: 545 IGREELLEALKRQ 557


>gi|189426944|ref|YP_001950043.1| DNA polymerase III gamma/tau subunit-like protein [Ralstonia phage
           RSL1]
 gi|189233256|dbj|BAG41613.1| DNA polymerase III gamma/tau subunit-like protein [Ralstonia phage
           RSL1]
          Length = 362

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 43/201 (21%), Positives = 73/201 (36%), Gaps = 27/201 (13%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR--- 76
              RP TL+   GQ +  + LK  + + K        + F GPP  GKTTL + VA    
Sbjct: 8   RKYRPTTLDRVIGQEKIVTRLKGMLSSGK----IPSAIAFFGPPSAGKTTLGRCVAHALN 63

Query: 77  ----ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD-----VLFIDEIHRL--SIIVEEIL 125
               E   +++            +  L+ N   R      ++ IDE  ++  + +  + L
Sbjct: 64  ELPVEKQTDYKEVDAADERGVDAVRDLIRNSRFRPQRNKRIILIDEAQQIVSNQVAAQAL 123

Query: 126 YPAMEDF---QLDLMVGEGPS----ARSVKINLSRFTLIAAT--TRVGLLTNPLQDRFGI 176
              +E+     L ++    P      R+ K  LSR T       +   LL   ++   G 
Sbjct: 124 LKTLEEPSPDTLWIICSMEPEKFGTTRTGKAILSRCTQFVLQEPSESDLLKQAVRIAKGE 183

Query: 177 PIRLNFYEIEDLKTIVQRGAK 197
            +     E   +   + RG  
Sbjct: 184 GMSYAMDEERTVLKALVRGCN 204


>gi|68537107|ref|YP_251812.1| DNA polymerase III subunits gamma and tau [Corynebacterium jeikeium
           K411]
 gi|68264706|emb|CAI38194.1| DNA polymerase III, gamma and tau subunits [Corynebacterium
           jeikeium K411]
          Length = 967

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 46/235 (19%), Positives = 80/235 (34%), Gaps = 27/235 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T  E  GQ      L V +++ +         LF GP G GKT+ A+++AR
Sbjct: 2   ALYRKYRPATFAEVVGQSHVTEPLSVALDSGRINHAY----LFSGPRGCGKTSSARILAR 57

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR----DVLFID-----EIHRLSIIVEEILYP 127
            L        GP     G   + ++         DV  +D      +  +  + E   Y 
Sbjct: 58  SLNC----VEGPTSTPCGKCESCVSLAPGGPGNLDVTELDAATHNGVDDMRELRERAFYA 113

Query: 128 AMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
             E      ++ E             + V+        I ATT    L   ++ R     
Sbjct: 114 PAESRYRVFIIDEAHMISTAGFNALLKIVEEPPEHLIFIFATTEPEKLLQTIRSR-THNY 172

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                   D++ +++      G+ V D     +     G+PR +  ++ ++   A
Sbjct: 173 PFRLLAPPDMRGLLESVVSGEGVPVEDAVYPLVIRAGGGSPRDSLSIMDQLLAGA 227


>gi|163732699|ref|ZP_02140144.1| DNA polymerase III subunits gamma and tau [Roseobacter litoralis
           Och 149]
 gi|161394059|gb|EDQ18383.1| DNA polymerase III subunits gamma and tau [Roseobacter litoralis
           Och 149]
          Length = 584

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 62/300 (20%), Positives = 104/300 (34%), Gaps = 31/300 (10%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T  +  GQ      LK   EA +         +  G  G GKTT A+++A+ +
Sbjct: 13  ARKYRPETFADLVGQDAMVQTLKNAFEADRIAQA----FIMTGIRGTGKTTTARIIAKGM 68

Query: 79  GV-NFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSII-----VEEILYPAME 130
                  TSGP     G        +E R  DV+ +D      +      ++ + Y A  
Sbjct: 69  NCIGPDGTSGPTTEPCGTCEHCTAIMEGRHVDVMEMDAASNTGVANIREIIDSVHYRAAS 128

Query: 131 DFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
                 ++ E             ++++        I ATT +  +   +  R      L 
Sbjct: 129 ARYKVYIIDEVHMLSTGAFNALLKTLEEPPEHVKFIFATTEIRKVPVTVLSRCQ-RFDLR 187

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
             E E +  ++++ A   G  +  +A   IA  + G+ R A  LL    D A    A   
Sbjct: 188 RIEPEVMIDLMRKIATAEGAEIAQDAMALIARAAEGSARDATSLL----DQAISHGAGET 243

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T     A L      ++  D  D     ++  +  G    +    A  ++P   + DL E
Sbjct: 244 TAAQVRAMLGLADRGRV-LDLFD----MILRGDTAGALTELSAQYAEGADPMAVLRDLAE 298


>gi|167039684|ref|YP_001662669.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter sp. X514]
 gi|300915067|ref|ZP_07132382.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter sp. X561]
 gi|307724990|ref|YP_003904741.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter sp. X513]
 gi|310943101|sp|B0K657|FTSH2_THEPX RecName: Full=ATP-dependent zinc metalloprotease FtsH 2
 gi|166853924|gb|ABY92333.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter sp. X514]
 gi|300888791|gb|EFK83938.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter sp. X561]
 gi|307582051|gb|ADN55450.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter sp. X513]
          Length = 510

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 56/244 (22%), Positives = 89/244 (36%), Gaps = 22/244 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAA-------KARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  E    LKV I+         K  A+    +LF GPPG GKT LA  +A E 
Sbjct: 82  TFKDVAGLDEVIDELKVIIDFMTNTEKYNKMGAKIPKGILFYGPPGTGKTLLATALAGET 141

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAME 130
              F S SG           A  + AL    +     ++FIDEI  +          + +
Sbjct: 142 NSTFISASGSEFVEKYVGVGASRIRALFAKAKKSAPSIIFIDEIDAVGTKRNTD-NNSEK 200

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
           D  L+ ++ E     S +       +I AT R+ +L   L    RF   I +    ++  
Sbjct: 201 DQTLNQLLVEMDGFNSNEG----IIVIGATNRIDMLDEALLRPGRFDRTIHIGAPNMKAR 256

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             I++   +   L  +   +         T      +       A + +   I +E  + 
Sbjct: 257 LEILKVHTRNKPLDESVSLSELARKTHGMTGAHLAAMCNEAAILAVMKNKSKIGKEEFEE 316

Query: 249 ALLR 252
           AL R
Sbjct: 317 ALER 320


>gi|302035663|ref|YP_003795985.1| DNA polymerase III subunit gamma/tau [Candidatus Nitrospira
           defluvii]
 gi|300603727|emb|CBK40058.1| DNA polymerase III, gamma and tau subunits [Candidatus Nitrospira
           defluvii]
          Length = 625

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 55/285 (19%), Positives = 100/285 (35%), Gaps = 33/285 (11%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T ++  GQ      L      + A        LF G  G+GKTT+A+++A+ L
Sbjct: 7   ARKYRPGTFDDVIGQSHVVQTL----MNSIATKRIAHAFLFSGTRGVGKTTVARILAKAL 62

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI-----IVEEILYPAMEDFQ 133
                 T  P    A      +T     DV+ ID     S+     I E + +       
Sbjct: 63  NCEQGPTGTPCNTCAN--CREITQGTSVDVVEIDGASNTSVDDVREIRENVKFTPFRGQY 120

Query: 134 LDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
              ++ E             ++++   S    I ATT +  +   +  R          +
Sbjct: 121 RVYIIDEVHMLSNSAFNALLKTLEEPPSHVVFIFATTEIHKIPATILSRCQHYNFRRISK 180

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            E ++  ++  A   GL + D +   +A  S G+ R    LL ++  F       TI  E
Sbjct: 181 AEIVQR-LRHVADQDGLTIEDRSLMALARASEGSMRDGLSLLDQIIAF----GGNTIRHE 235

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGL 289
             +  L  +  +++         +  + +        ++ I+A L
Sbjct: 236 DLETLLGAVPQERI------RAMVEAVIQQDSAKA--LQVIAALL 272


>gi|228476401|ref|ZP_04061095.1| DNA polymerase III subunit gamma/tau [Streptococcus salivarius
           SK126]
 gi|228252023|gb|EEK11061.1| DNA polymerase III subunit gamma/tau [Streptococcus salivarius
           SK126]
          Length = 550

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 55/258 (21%), Positives = 92/258 (35%), Gaps = 27/258 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     R +T  E  GQ    + L+  +E+ K         LF GP G GKT+ A++ A+
Sbjct: 4   ALYRKYRSQTFGEMVGQKVISTTLRQAVESGKISHAY----LFSGPRGTGKTSAAKIFAK 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +    +    P      D+   +TN    DV+ ID      +  +  I ++  Y     
Sbjct: 60  AMNCPNQVDGEPCNHC--DICRDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRA 117

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQD---RFGIPIR 179
                ++ E             ++++        I ATT +  +   +     RF     
Sbjct: 118 TYKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSI 177

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
                 E L +I++      GL   DEA   IA R+ G  R A  +L +    +   H  
Sbjct: 178 KQGAIKEHLASILE----KEGLTFDDEALTIIARRAEGGMRDALSILDQALSLSPDNHVS 233

Query: 240 TITREIADAALLRLAIDK 257
               E    ++   A+D 
Sbjct: 234 QAVAEEITGSIGLTALDS 251


>gi|123399546|ref|XP_001301493.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121882680|gb|EAX88563.1| hypothetical protein TVAG_409150 [Trichomonas vaginalis G3]
          Length = 324

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 77/230 (33%), Gaps = 38/230 (16%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +SQ    +   RPR L++  G       L+     A A    + +++  GPPG GKTT  
Sbjct: 1   MSQSQPWVEKYRPRVLDDVVGNTAVIERLR-----ALAAEGNIPNLILTGPPGCGKTTSL 55

Query: 72  QVVAR------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIHRL 117
             +              EL  +       V     + A     L      V+ +DE   +
Sbjct: 56  LALCHQLLGDKEKDAVIELNASDDRGIDVVRKNIKEFAKRHVALPEGRHKVVLLDESDSM 115

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           +   ++ +   ME++                   +RF    A  +   +  P+Q R  I 
Sbjct: 116 TDAAQQAMRRIMENYTKT----------------TRFVF--ACNQSEKVIEPIQSRCAIV 157

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
                 E E +   + +  +L G     E    +A  + G  R A   L+
Sbjct: 158 RFSRVEENE-IAARLMKICELEGFKPESEGIATLARLADGDMRTAINGLQ 206


>gi|33864597|ref|NP_896156.1| DNA polymerase, gamma and tau subunits [Synechococcus sp. WH 8102]
 gi|33632120|emb|CAE06576.1| DNA polymerase, gamma and tau subunits [Synechococcus sp. WH 8102]
          Length = 593

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 84/221 (38%), Gaps = 19/221 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  ++  GQ    + L   + + +         LF GP G GKT+ A+++AR L    
Sbjct: 13  RPQRFDQLVGQEAIAATLGHALTSNRIA----PAYLFSGPRGTGKTSSARILARSLNCLN 68

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P      +L   +      DV+ ID      +  +  ++E   +  ++      +
Sbjct: 69  SDGPTPEPCGTCELCTTIAAGTALDVIEIDAASNTGVDNIRELIERSRFAPVQARWKVYV 128

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           V E             ++++    +   + ATT    +   +  R           ++ L
Sbjct: 129 VDECHMLSTAAFNALLKTLEEPPPQVVFVLATTDPQRVLPTILSRCQ-RFDFRRIPLDAL 187

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           +  +   A+   + +  EA   +A+RS+G  R A  LL ++
Sbjct: 188 EAHLSWIAEQEAIEIQPEAIHVVALRSQGGLRDAESLLDQL 228


>gi|86140173|ref|ZP_01058735.1| DNA polymerase III subunits gamma and tau [Roseobacter sp. MED193]
 gi|85823110|gb|EAQ43323.1| DNA polymerase III subunits gamma and tau [Roseobacter sp. MED193]
          Length = 608

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 62/314 (19%), Positives = 111/314 (35%), Gaps = 31/314 (9%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           +     +  Q        RP T  +  GQ      LK   E  +         +  G  G
Sbjct: 3   DSTSDSSQPQYQVLARKYRPETFADLVGQDAMVRTLKNAFETNRIAQA----FVMTGIRG 58

Query: 65  LGKTTLAQVVARELGVNFRSTSG-PVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSI-- 119
            GKTT A+++A+ +       +G P     G        +E R  DV+ +D   R  +  
Sbjct: 59  TGKTTTARIIAKGMNCIGPDGTGQPTTEPCGVCEHCTAIMEGRHVDVMEMDAASRTGVGD 118

Query: 120 ---IVEEILYPAMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLT 167
              I++ + Y A        ++ E             ++++   +    I ATT +  + 
Sbjct: 119 IREIIDSVQYRAASARYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVP 178

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             +  R      L   E E +  ++++ A   G  +T++A   I   + G+ R A  LL 
Sbjct: 179 VTVLSRCQ-RYDLRRIEPEVMIALMRKIATAEGAEITEDALALITRAAEGSVRDATSLL- 236

Query: 228 RVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISA 287
              D A    A   T +   A L      ++  D +D     ++  +  G    +    A
Sbjct: 237 ---DQAISHGAGETTADQVRAMLGLADRGRV-LDLMD----MVLRGDAAGALTELSAQYA 288

Query: 288 GLSEPRDAIEDLIE 301
             ++P   + DL E
Sbjct: 289 EGADPLAVLRDLAE 302


>gi|325136513|gb|EGC59117.1| DNA polymerase III, subunits gamma and tau [Neisseria meningitidis
           M0579]
          Length = 738

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 50/303 (16%), Positives = 90/303 (29%), Gaps = 63/303 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T  +  GQ      L+  ++  +     L H  L  G  G+GKTT+A+++A+ L   
Sbjct: 40  RPKTFADLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCE 94

Query: 82  FRS------------------------TSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                                ++  +L N +         V  I
Sbjct: 95  NAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTGIDNIREILENAQYAPTAGKYKVYII 154

Query: 112 DEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+H LS      +   +E+    +  ++      +     LSR                
Sbjct: 155 DEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNM------- 207

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
                           + +   +        +A    A   +   + G+ R A  LL + 
Sbjct: 208 --------------TAQQVADHLAHVLDSEKIAYEPAALQLLGRAAAGSMRDALSLLDQA 253

Query: 230 RDFAEVAHAKTITREIADAALLRLAIDKM-GFDQLDLRYLTMIARNFGGGPVGIETISAG 288
                   A+   R++  A   +   + + G    D   LT  A+      VG +     
Sbjct: 254 IALGSGKVAENDVRQMIGAVDKQYLYELLTGIINQDGAALTAKAQEMAACAVGFDN---A 310

Query: 289 LSE 291
           L E
Sbjct: 311 LGE 313


>gi|260939858|ref|XP_002614229.1| hypothetical protein CLUG_05714 [Clavispora lusitaniae ATCC 42720]
 gi|238852123|gb|EEQ41587.1| hypothetical protein CLUG_05714 [Clavispora lusitaniae ATCC 42720]
          Length = 339

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 59/189 (31%), Gaps = 37/189 (19%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           D+E L           +   RP+ L++   Q  A   L+  +++A      L H+LF GP
Sbjct: 5   DQERL------DHTPWVEKYRPKKLDDVASQDHAVRVLQKTLQSA-----NLPHMLFYGP 53

Query: 63  PGLGKTTLAQVVARE------LGVNFRSTSGPVIAKAGDLAALLTNLEDRD--------- 107
           PG GKT+    +A++              +         +   + N              
Sbjct: 54  PGTGKTSTVLALAKQLYGPRLYRSRVLELNASDERGISIVRQKIKNFARLTVSNPSPEDL 113

Query: 108 ---------VLFIDEIHRLSIIVEEILYPAME--DFQLDLMVGEGPSARSVKINLSRFTL 156
                    ++ +DE   ++   +  L   ME         +      R +    SR + 
Sbjct: 114 REYPCPPYKIIILDEADSMTNDAQSALRRTMENYSGVTRFCLICNYITRIIDPLASRCSK 173

Query: 157 IAATTRVGL 165
               +  G 
Sbjct: 174 FRFRSLDGE 182


>gi|195440776|ref|XP_002068216.1| GK10084 [Drosophila willistoni]
 gi|194164301|gb|EDW79202.1| GK10084 [Drosophila willistoni]
          Length = 333

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 50/277 (18%), Positives = 96/277 (34%), Gaps = 40/277 (14%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           ++ +  +     I   RP   +E  G  +  + L VF     A      +++  GPPG+G
Sbjct: 9   IVDKRHNNSLPWIEKYRPVKFDEIVGNEDTVARLSVFATQGNA-----PNIIIAGPPGVG 63

Query: 67  KTTLAQVVAR------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFID 112
           KTT  Q +AR            EL  +       V  K    A     L      ++ +D
Sbjct: 64  KTTTIQCLARILLGDSYKEAVLELNASNERGIDVVRNKIKMFAQQKVTLPKGRHKIVILD 123

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E   ++   ++ L   ME +                 N +RF L   T+    +  P+Q 
Sbjct: 124 EADSMTEGAQQALRRTMEIYS----------------NTTRFALACNTSE--KIIEPIQS 165

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA-GRLLRRVRD 231
           R  +       + + +  +++  ++L  L   ++    I   ++G  R A   L    + 
Sbjct: 166 RCAMLRFTKLSDSQVMAKLIE-VSQLENLKYEEDGLEAIVFTAQGDMRQALNNLQSTAQG 224

Query: 232 FAEVAHAKTI-TREIADAALLRLAIDKMGFDQLDLRY 267
           F ++         +     LL+  +     + +   Y
Sbjct: 225 FGDITGPNVFKVCDEPHPMLLQDMLHHCAGNDIHKAY 261


>gi|188584657|ref|YP_001916202.1| DNA polymerase III, subunits gamma and tau [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179349344|gb|ACB83614.1| DNA polymerase III, subunits gamma and tau [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 589

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 83/227 (36%), Gaps = 27/227 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+   +  GQ    + LK  I  ++     + H  LF GP G GKT++A+V A+ L  +
Sbjct: 11  RPKYFRDLVGQEHVVTTLKNAISQSR-----ISHAYLFSGPRGTGKTSVAKVFAKALNCD 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR--DVLFID-----EIHRLSIIVEEILYPAMEDFQL 134
               + P     G  +  + +      D+L ID      I  +  I + + Y   E    
Sbjct: 66  HSQDNEP----CGQCSRCIEHDRGTFMDILEIDAASNRGIDEIREIRDHVAYSPSEGNYK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             +V E             ++++        I ATT    L   +  R            
Sbjct: 122 VYIVDEVHMLTTEAFNALLKTLEEPPDYVIFILATTEPHKLPMTVLSRCQ-RFDFYRLST 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
             ++  +Q       L+ T E+   IA +S G  R A  LL +   F
Sbjct: 181 SKIEKQLQNVIDSKNLSATKESLSIIAKKSDGGMRDALSLLDQSLSF 227


>gi|320040647|gb|EFW22580.1| DNA replication factor C subunit [Coccidioides posadasii str.
           Silveira]
          Length = 352

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 78/227 (34%), Gaps = 38/227 (16%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   +   RP  L++  G  E    LK+      AR   + HV+  G PG+GKTT    +
Sbjct: 27  ELPWVEKYRPVFLDDVVGNTETIERLKII-----ARDGNMPHVIISGMPGIGKTTSILCL 81

Query: 75  AREL-----GVNFRSTSGPVIAKAGDLAALLTNLEDRDV---------LFIDEIHRLSII 120
           AR++            +         +   +     + V         + +DE   ++  
Sbjct: 82  ARQMLGDVYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGKHKLVILDEADSMTSG 141

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            ++ L   ME +                   +RF    A  +   +  PLQ R  I    
Sbjct: 142 AQQALRRTMEIYSAT----------------TRFAF--ACNQSNKIIEPLQSRCAILRYS 183

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
              + + +K ++Q   +   +  +D+    +   + G  R A   L+
Sbjct: 184 RLTDAQIVKRLMQ-ICEAEDVKHSDDGIAALVFSAEGDMRQAINNLQ 229


>gi|302544190|ref|ZP_07296532.1| DNA polymerase III, subunits gamma and tau [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302461808|gb|EFL24901.1| DNA polymerase III, subunits gamma and tau [Streptomyces
           himastatinicus ATCC 53653]
          Length = 851

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 58/173 (33%), Gaps = 22/173 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T  E  GQ      L+  +   +         LF GP G GKTT A+++AR
Sbjct: 13  ALYRRYRPETFAEVIGQEHVTDPLQQALRNNRVNHAY----LFSGPRGCGKTTSARILAR 68

Query: 77  ELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFIDEIHRLSII------VEEILYPA 128
            L      T  P        DLA         DV+ ID      +        +    PA
Sbjct: 69  CLNCEKGPTPAPCGECQSCQDLA--RNGPGSIDVIEIDAASHGGVDDARELREKAFFGPA 126

Query: 129 MEDFQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
              +++ ++         G     + V+        I ATT    +   ++ R
Sbjct: 127 SSRYKIYIIDEAHMVTSAGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSR 179


>gi|255023001|ref|ZP_05294987.1| hypothetical protein LmonocyFSL_05110 [Listeria monocytogenes FSL
           J1-208]
          Length = 169

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 51/160 (31%), Gaps = 37/160 (23%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RP++ ++  GQ      LK  I     + +     LF GP G GKT+ A++ A+
Sbjct: 5   ALYRVFRPQSFQDVVGQEHVTKTLKNAI----VQNKTSHAYLFSGPRGTGKTSAAKIFAK 60

Query: 77  ELGVNF------------------------RSTSGPVIAKAGDLAALLTNLE------DR 106
            +                                        ++  +   ++        
Sbjct: 61  AINCEHGHDGEPCNECEICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYAPTVAKY 120

Query: 107 DVLFIDEIHRLSIIVEEILYPAMED---FQLDLMVGEGPS 143
            V  IDE+H LS      L   +E+     + ++    P 
Sbjct: 121 KVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPH 160


>gi|229176622|ref|ZP_04304028.1| DNA polymerase III subunit gamma/tau [Bacillus cereus 172560W]
 gi|228606852|gb|EEK64267.1| DNA polymerase III subunit gamma/tau [Bacillus cereus 172560W]
          Length = 562

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 69/209 (33%), Gaps = 42/209 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+  E+  GQ      L+  +       E + H  LF GP G GKTT+A+V A+ +   
Sbjct: 11  RPQKFEDVVGQKHVTKTLQNAL-----LQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCE 65

Query: 82  F------------------------RSTSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                                ++  +   ++      +  V  I
Sbjct: 66  HAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKVYII 125

Query: 112 DEIHRLSIIVEEILYPAMED--FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+H LS+     L   +E+    +  ++      +     +SR              N 
Sbjct: 126 DEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKIS---VND 182

Query: 170 LQDRFGIPIRLNFYEIEDLK-TIVQRGAK 197
           + +R    +     ++ED    IV R A+
Sbjct: 183 IVERLSTVVTNEGTQVEDEALQIVARAAE 211


>gi|241955559|ref|XP_002420500.1| ATPase of the AAA family, putative; ribosome biogenesis ATPase,
           putative; ribosome export protein, putative [Candida
           dubliniensis CD36]
 gi|223643842|emb|CAX41579.1| ATPase of the AAA family, putative [Candida dubliniensis CD36]
          Length = 830

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 86/224 (38%), Gaps = 15/224 (6%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLED 105
           E    VL  GPPG GKTT+A  +A EL V F + S P +           L  +    + 
Sbjct: 228 EPPRGVLLYGPPGCGKTTIANALAGELKVPFINISAPSVVSGMSGESEKKLREIFEEAKQ 287

Query: 106 --RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
               ++F+DEI  ++   +      ME   +  ++         K       +I AT R 
Sbjct: 288 IAPCLIFMDEIDAITPKRDGGAQREMEKRIVAQLLTLMDELTLEKTGGKPVVVIGATNRP 347

Query: 164 GLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRI 221
             L + L+   RF   I LN    E   +I++  A    + + +         S+ TP  
Sbjct: 348 DSLDSALRRAGRFDREICLNVPNEEQRISILK--AMTKNIKLENGEYFNYRELSKLTPGY 405

Query: 222 AGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDL 265
            G  L+ +   A +   K I   +++   L+        D +D+
Sbjct: 406 VGADLKSLVTAAGITAIKRIFETMSE---LQEETHSAKDDSMDV 446



 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 71/231 (30%), Gaps = 16/231 (6%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLT 101
           K    A   VL  GPPG GKT LA+ VA E   NF S  GP +           +  +  
Sbjct: 553 KVGIAAPAGVLMWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESEKAVRQVFQ 612

Query: 102 NLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA 159
                   ++F DE+  L    +  +  +       L+            +     +I A
Sbjct: 613 RARASTPCIIFFDELDALVPRRDTSMSESSSRVVNTLLTELDGLN-----DRKGVFVIGA 667

Query: 160 TTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDE-AACEIAMRSR 216
           T R  ++   +    R    + +     E+   I++   +     + +      IA   R
Sbjct: 668 TNRPDMIDPAMLRPGRLDKTLYIELPTPEERLEILKTLVRTNNSPLNENVDLNAIARDPR 727

Query: 217 GTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRY 267
                   L   V++    A  K   +      L      +      D+  
Sbjct: 728 CGNFSGADLFSLVKEAGVWALKKRFFQNQKIQELDSSGFYEDSIGGDDISI 778


>gi|90416006|ref|ZP_01223939.1| DNA polymerase III subunits gamma and tau [marine gamma
           proteobacterium HTCC2207]
 gi|90332380|gb|EAS47577.1| DNA polymerase III subunits gamma and tau [marine gamma
           proteobacterium HTCC2207]
          Length = 647

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 52/259 (20%), Positives = 80/259 (30%), Gaps = 59/259 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPR   E  GQ      L+  I A     + L H  LF G  G+GKTT+A+++++ L   
Sbjct: 11  RPRIFAEMAGQQHV---LQALINA--LDHDRLHHAYLFTGTRGVGKTTIARILSKCLNCE 65

Query: 82  FRSTS------------------------GPVIAKAGDLAALLTNLE------DRDVLFI 111
              +S                                D+  LL N++         +  I
Sbjct: 66  VGVSSVPCGECSSCTEIGEGRFIDLIEVDAASRTGVDDMRELLDNVQYAPSRGRYKIYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSKSSFAALLKTLEE------------------PPPHVKFLFATTDPQKLPITVL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L     E +   +Q       +   + A   +A  + G+ R A  L     D
Sbjct: 168 SRC-LQFNLKNLSAERITEHLQFVLGEEQVPFEEAALWSLARAADGSMRDALSL----TD 222

Query: 232 FAEVAHAKTITREIADAAL 250
            A       +      A L
Sbjct: 223 QAIGHGGGQVNEGEVSAML 241


>gi|167036973|ref|YP_001664551.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320115391|ref|YP_004185550.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|166855807|gb|ABY94215.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319928482|gb|ADV79167.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 510

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 56/244 (22%), Positives = 89/244 (36%), Gaps = 22/244 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAA-------KARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  E    LKV I+         K  A+    +LF GPPG GKT LA  +A E 
Sbjct: 82  TFKDVAGLDEVIDELKVIIDFMTNTEKYNKMGAKIPKGILFYGPPGTGKTLLATALAGET 141

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAME 130
              F S SG           A  + AL    +     ++FIDEI  +          + +
Sbjct: 142 NSTFISASGSEFVEKYVGVGASRIRALFAKAKKSAPSIIFIDEIDAVGTKRNTD-NNSEK 200

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
           D  L+ ++ E     S +       +I AT R+ +L   L    RF   I +    ++  
Sbjct: 201 DQTLNQLLVEMDGFNSNEG----IIVIGATNRIDMLDEALLRPGRFDRTIHIGAPNMKAR 256

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             I++   +   L  +   +         T      +       A + +   I +E  + 
Sbjct: 257 LEILKVHTRNKPLDESVSLSELARKTHGMTGAHLAAMCNEAAILAVMKNKSKIGKEEFEE 316

Query: 249 ALLR 252
           AL R
Sbjct: 317 ALER 320


>gi|160887744|ref|ZP_02068747.1| hypothetical protein BACUNI_00146 [Bacteroides uniformis ATCC 8492]
 gi|270295690|ref|ZP_06201891.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|156862775|gb|EDO56206.1| hypothetical protein BACUNI_00146 [Bacteroides uniformis ATCC 8492]
 gi|270274937|gb|EFA20798.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 604

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 75/228 (32%), Gaps = 20/228 (8%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T E   GQ    + LK  I   K         LF GP G+GKTT A++ A+ +
Sbjct: 8   ARKYRPSTFESVVGQRALTTTLKNAIATGKLAHAY----LFCGPRGVGKTTCARIFAKTI 63

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL-----YPAMEDFQ 133
                +  G    +     A        ++  +D     S+     L      P      
Sbjct: 64  NCMSPTADGEACNQCESCTA-FNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKY 122

Query: 134 LDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
              ++ E             ++++        I ATT    +   +  R  I        
Sbjct: 123 KVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFSRI-G 181

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           +ED    +   A   G+    EA   IA+++ G  R A  +  +V  F
Sbjct: 182 VEDTVAHLAYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSF 229


>gi|295397215|ref|ZP_06807315.1| cell division protein FtsH [Aerococcus viridans ATCC 11563]
 gi|294974538|gb|EFG50265.1| cell division protein FtsH [Aerococcus viridans ATCC 11563]
          Length = 646

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 59/247 (23%), Positives = 99/247 (40%), Gaps = 28/247 (11%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVARE 77
           R  ++  GQ EA  +L   ++  K         A+A   VL VGPPG GKT +A+ VA E
Sbjct: 205 RNFKDVAGQDEAKESLVEVVDYLKEPKKYQEIGAQAPRGVLLVGPPGTGKTLMAKAVAGE 264

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
            GV F S +G           A  +  L     D+   ++FIDEI  +     +  Y   
Sbjct: 265 AGVPFFSIAGSEFVEMFVGRGAAKVRDLFKQANDKAPCIVFIDEIDTIGKSR-DNSYSTN 323

Query: 130 EDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           ++ +  L  ++ E       K       ++AAT R   L   L    RF   + +   ++
Sbjct: 324 DEREQTLNQLLTEMDGFEGDKG----VIILAATNRPESLDKALLRPGRFDRQVSMELPDL 379

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           +  + I++  AK   +        +    +R T   +G  L  + + A +   +   +EI
Sbjct: 380 KGREEILRVHAKEYKMGQN----IDYRYIARATAGASGADLANIINEAGLRAVRNKHKEI 435

Query: 246 ADAALLR 252
           +   L  
Sbjct: 436 SQIDLDE 442


>gi|218296188|ref|ZP_03496944.1| DNA polymerase III, subunits gamma and tau [Thermus aquaticus
           Y51MC23]
 gi|218243260|gb|EED09790.1| DNA polymerase III, subunits gamma and tau [Thermus aquaticus
           Y51MC23]
          Length = 500

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 67/234 (28%), Gaps = 51/234 (21%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T +E  GQ      L   I   +         LF GP G+GKTT A+++A 
Sbjct: 3   ALYRTFRPLTFQEVVGQEHVKEPLLRAIREGRLAQAY----LFSGPRGVGKTTTARLLAM 58

Query: 77  ELGVN----------------------FRSTSGPVIAKAGDLAALLTNL------EDRDV 108
            +G                                     D+  L   +        + V
Sbjct: 59  AVGCQGQKRPCGVCPHCQAVQKGAHPDVVEIDAASNNSVEDVRELRERILLAPLTAPKKV 118

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
             +DE H LS      L   +E+                         + ATT    +  
Sbjct: 119 FILDEAHMLSKSAFNALLKTLEE------------------PPPHVLFVFATTEPERMPP 160

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
            +  R          E E     ++R  +  G    +EA   IA  S G  R A
Sbjct: 161 TILSRVQHYRFRRLREEEIALK-LRRILEEMGREAEEEALLLIARLSDGAMRDA 213


>gi|154484288|ref|ZP_02026736.1| hypothetical protein EUBVEN_02000 [Eubacterium ventriosum ATCC
           27560]
 gi|149734765|gb|EDM50682.1| hypothetical protein EUBVEN_02000 [Eubacterium ventriosum ATCC
           27560]
          Length = 541

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 81/230 (35%), Gaps = 21/230 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T ++  GQ      LK  I A +         LF G  G GKT++A++ A+
Sbjct: 20  ALYRKFRPSTFDQVKGQDHIVQTLKNQINANRIGHAY----LFCGTRGTGKTSVAKIFAK 75

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +         P      +    +TN    +V+ ID      +  +  I +EI Y     
Sbjct: 76  AVNCEHPVDGSPCNEC--ETCRGITNGSAMNVIEIDAASNNGVDNIRQIRDEIQYSPSSG 133

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++   +    I ATT    +   +  R         
Sbjct: 134 KYTVYIIDEVHMLSIGAFNALLKTLEEPPAYVIFILATTEPHKIPITILSRCQRYDFKRI 193

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
             I+ +   +    +   + V D+A   +A  + G+ R A  LL +   F
Sbjct: 194 -SIDTIAARLSELMEKESIEVEDKAIRYVAKAADGSMRDALSLLDQCIAF 242


>gi|148988284|ref|ZP_01819731.1| DNA polymerase III, gamma and tau subunits [Streptococcus
           pneumoniae SP6-BS73]
 gi|147925965|gb|EDK77039.1| DNA polymerase III, gamma and tau subunits [Streptococcus
           pneumoniae SP6-BS73]
          Length = 551

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 53/296 (17%), Positives = 90/296 (30%), Gaps = 58/296 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     R +   +  GQ      LK  +E      E + H  LF GP G GKT++A++ A
Sbjct: 4   ALYRKYRSQNFSQLVGQEVVAKTLKQAVE-----QEKISHAYLFSGPRGTGKTSVAKIFA 58

Query: 76  RELGVNFRS------------------------TSGPVIAKAGDLAALLTN------LED 105
           + +    +                                   ++  +         L  
Sbjct: 59  KAMNCPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLAR 118

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
             V  IDE+H LS      L   +E+                         I ATT +  
Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPT------------------QNVVFILATTELHK 160

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           +   +  R       +    + +K  +    +   ++   EA   IA R+ G  R A  +
Sbjct: 161 IPATILSRVQRFEFKSIKTQD-IKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSI 219

Query: 226 LRRVRDFAEVAHAKTITREIADAALLRLAIDKM--GFDQLDL-RYLTMIARNFGGG 278
           L +     +     T   E     +   A+D       Q D+ + L+ +   F  G
Sbjct: 220 LDQALSLTQGNELTTAISEEITGTISLPALDDYVASLSQQDVPKALSCLNLLFDNG 275


>gi|123505671|ref|XP_001329029.1| ATPase, AAA family protein [Trichomonas vaginalis G3]
 gi|121911979|gb|EAY16806.1| ATPase, AAA family protein [Trichomonas vaginalis G3]
          Length = 325

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 71/225 (31%), Gaps = 37/225 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP  L++        S +K FI+        L H+ F GPPG GKTT A  ++ 
Sbjct: 8   PWVEKYRPSKLDDVVSHEACISTIKKFID-----KNCLPHLCFHGPPGTGKTTTAIAISH 62

Query: 77  ------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-DVLFIDEIHRLSIIVEE 123
                       EL  +       V  +  D A+  +    +  ++ +DE   ++   + 
Sbjct: 63  QLYGNDTSMSVLELNASDERGIDTVRMRIKDFASSRSLFGPKIKLIILDESDAMTGAAQA 122

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
            L   ME F                   S    I        L   L+ R     R    
Sbjct: 123 ALRRIMEQFT------------------SNVRFILICNYPEKLIPALRSRC-TEFRFQPL 163

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
             ED    ++  A    L + +     +     G  R +  L++ 
Sbjct: 164 PDEDAAKFLRHIADAEKLNMDEGGLKALLKLGIGDLRRSINLMQT 208


>gi|295100449|emb|CBK97994.1| DNA polymerase III, subunits gamma and tau [Faecalibacterium
           prausnitzii L2-6]
          Length = 626

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 46/256 (17%), Positives = 83/256 (32%), Gaps = 21/256 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  E+   Q    + L+  I + +         LF G  G GKTT A++ A+ +    
Sbjct: 10  RPQRFEDVVAQRGIVTALRNQIASGRVGHAY----LFTGVRGTGKTTCAKIFAKAVNCLH 65

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P      ++   + N    DV+ +D      +  +  + +E  Y          +
Sbjct: 66  PHNGDP--CGECEICRGIDNGSILDVVEMDAASNNGVDDIRDLRDETAYTPSACHYKVYI 123

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++   +    I ATT +  +   +  R            ED+
Sbjct: 124 IDEVHMLSTAAFNALLKTLEEPPAHVIFILATTEIQKVPATILSRCQRYDFTRI-GPEDI 182

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              V+  A   GL +T   A  I+  + G  R A  +L           A  + R     
Sbjct: 183 AQRVEYIAGQEGLELTTGGAELISRLADGAMRDALSILDTCAGVTAKIDADVVRRMAGVT 242

Query: 249 ALLRLAIDKMGFDQLD 264
               L       +  D
Sbjct: 243 DRSYLFHISDALEAQD 258


>gi|322703485|gb|EFY95093.1| putative replication factor C [Metarhizium anisopliae ARSEF 23]
          Length = 357

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 80/242 (33%), Gaps = 39/242 (16%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   +   RP  L++  G  E    LK+      AR   + HV+  G PG+GKTT    +
Sbjct: 32  ELPWVEKYRPVFLDDVVGNTETIERLKII-----AREGNMPHVIISGMPGIGKTTSVLCL 86

Query: 75  ARE-----LGVNFRSTSGPVIAKAGDLAALLTNLEDRDV---------LFIDEIHRLSII 120
           AR+             +         +   +     + V         + +DE   ++  
Sbjct: 87  ARQLLGESYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRHKLVILDEADSMTSG 146

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            ++ L   ME +                 N +RF    A  +   +  PLQ R  I    
Sbjct: 147 AQQALRRTMEIYS----------------NTTRFAF--ACNQSNKIIEPLQSRCAILRYA 188

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA-GRLLRRVRDFAEVAHAK 239
              + + +K ++Q   +   +  +D+    +   + G  R A   L      F  V+   
Sbjct: 189 KLSDAQVVKRLMQ-IIEAEKVEYSDDGLAALVFSAEGDMRQAINNLQSTFAGFGFVSGDN 247

Query: 240 TI 241
             
Sbjct: 248 VF 249


>gi|300769760|ref|ZP_07079642.1| DNA polymerase III, gamma/tau subunit DnaX [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|300492668|gb|EFK27854.1| DNA polymerase III, gamma/tau subunit DnaX [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
          Length = 569

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 78/226 (34%), Gaps = 21/226 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  +E  GQ      LK  I       +     LF GP G GKT+ A++ A+ +  + 
Sbjct: 10  RPQRFDEIVGQQMITQTLKNAI----MTHQTSHAYLFTGPRGTGKTSAAKIFAKAINCHH 65

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P      +    +T  +  DV+ ID      +  +  I ++  Y   +      +
Sbjct: 66  LVDGEPCNEC--ETCTAITKGQLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQADYKVYI 123

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++   +    I ATT    +   +  R            +  
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPLTIISRTQRFDFRRITAKDSY 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
             +V        +   ++A   IA  + G  R A  +L +V  F +
Sbjct: 184 DRMV-YILNEKDVTYDEKALRVIAAAAEGGMRDALSILDQVISFGD 228


>gi|149927016|ref|ZP_01915274.1| AAA ATPase, central region [Limnobacter sp. MED105]
 gi|149824237|gb|EDM83457.1| AAA ATPase, central region [Limnobacter sp. MED105]
          Length = 586

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 47/265 (17%), Positives = 91/265 (34%), Gaps = 28/265 (10%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTT 69
           N +   A     RPR  +   GQ      L   ++      + L H  LF G  G+GKTT
Sbjct: 2   NQTASQALARKWRPRDFDSLVGQAHVVKALSHALD-----NQRLHHAYLFTGTRGVGKTT 56

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-------EIHRLSIIVE 122
           +A+++AR +      +  P     G   A +   + R V  ++        +  +  ++E
Sbjct: 57  IARILARAVNCEQGISRTP----CGKCQACVEISQGRFVDLLEVDAATNTRVDEMRALLE 112

Query: 123 EILYPAMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
             +Y          ++ E             ++++        I ATT    +   +  R
Sbjct: 113 NAMYAPTAGRYKVYVIDEVHMLSTSAFNAMLKTLEEPPGHVLFILATTDPQKIPATVLSR 172

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
             +   L     + L   +        +A    A   +A  +RG+ R A  L  +   ++
Sbjct: 173 C-LQFALRQLPPDQLADHLAHILSEEQIAFEPGALRLLAKAARGSVRDALSLTDQAIAYS 231

Query: 234 EVAHAKTITREIADAALLRLAIDKM 258
              H    T      A+ +  + ++
Sbjct: 232 A-GHVTEDTVRTMLGAIDQQVVHQL 255


>gi|237750661|ref|ZP_04581141.1| DNA polymerase III gamma and tau [Helicobacter bilis ATCC 43879]
 gi|229373751|gb|EEO24142.1| DNA polymerase III gamma and tau [Helicobacter bilis ATCC 43879]
          Length = 939

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 54/289 (18%), Positives = 89/289 (30%), Gaps = 59/289 (20%)

Query: 5   EGLLSRNVSQEDADIS-----LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           E L   NV+Q ++  +       RP+T  E  GQ      L + +++ K         LF
Sbjct: 27  EILAQSNVAQTESTEAIALALKYRPKTFAELVGQESVARTLCLALDSKKIANAY----LF 82

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGP------------------------VIAKAGD 95
            G  G GKT+ A+++AR L      TS P                           K  D
Sbjct: 83  SGLRGSGKTSSARILARSLQCERGITSSPCGTCANCIAALKGAHLDITELDGASNRKIDD 142

Query: 96  LAALLTN------LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKI 149
           +  L+        +    +  IDE+H L+      L   +E+                  
Sbjct: 143 MRDLIEQTKYKPTMGRFKIFIIDEVHMLTKEAFNSLLKTLEE------------------ 184

Query: 150 NLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAAC 209
             +    I ATT    +   +  R              LK  +    +   ++  + +  
Sbjct: 185 PPNYVKFILATTDPLKVPATILSRTQHFRFKKIPTT-ALKNHLAHILQKENVSSDEASLD 243

Query: 210 EIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKM 258
            +     G+ R    LL +   F +     T        AL   A D +
Sbjct: 244 MLIRNGHGSLRDTLTLLDQAIVFCQ-NSLNTQKLADMLGALDPSAFDTL 291


>gi|317472133|ref|ZP_07931465.1| DNA polymerase III [Anaerostipes sp. 3_2_56FAA]
 gi|316900537|gb|EFV22519.1| DNA polymerase III [Anaerostipes sp. 3_2_56FAA]
          Length = 532

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 79/230 (34%), Gaps = 21/230 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP   +E  GQ    + LK  +EA +         LF G  G GKT++A+++A+
Sbjct: 5   ALYRKFRPSAFDEVKGQDHIVTTLKNQLEAGRIGHAY----LFCGTRGTGKTSVAKLLAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +         P      +    +      +V+ ID      +  +  I E++ Y     
Sbjct: 61  AVNCEHPEDGNP--CGVCESCREIQEGSSMNVMEIDAASNNGVDNIRDIKEQVQYSPASG 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT V  +   +  R       + 
Sbjct: 119 KYKVFIIDEVHMLSMGAFNALLKTLEEPPEYVIFILATTEVHKIPITILSRCQ-RYDFHR 177

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
              + +   +        +   ++A   +A  + G+ R A  LL +   F
Sbjct: 178 ITADVIADRLMELMSEEHVEAEEKALRYVARMADGSMRDALSLLDQCIAF 227


>gi|306825065|ref|ZP_07458407.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
 gi|304432501|gb|EFM35475.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
          Length = 551

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 54/296 (18%), Positives = 89/296 (30%), Gaps = 58/296 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     R +T  +  GQ      LK  +E      E + H  LF GP G GKT++A++ A
Sbjct: 4   ALYRKYRSQTFSQLVGQEVVAKTLKQAVE-----QEKISHAYLFSGPRGTGKTSVAKIFA 58

Query: 76  RELGVNFRS------------------------TSGPVIAKAGDLAALLTN------LED 105
           + +    +                                   ++  +         L  
Sbjct: 59  KAMNCPNQVDGEPCNHCYICQAVTEGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLAR 118

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
             V  IDE+H LS      L   +E+                         I ATT +  
Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPT------------------QNVVFILATTELHK 160

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           +   +  R       +    +  + I     +   ++   EA   IA R+ G  R A  +
Sbjct: 161 IPATILSRVQRFEFKSIKTQDIKEHIYH-ILEKENISSEPEAVEIIARRAEGGMRDALSI 219

Query: 226 LRRVRDFAEVAHAKTITREIADAALLRLAIDKM--GFDQLDL-RYLTMIARNFGGG 278
           L +     +     T   E     +   A+D       Q D+ + L  +   F  G
Sbjct: 220 LDQALSLTQGNELTTAISEEITGTISLSALDDYVAALSQQDVPKALDSLNLLFENG 275


>gi|171463390|ref|YP_001797503.1| DNA polymerase III, subunits gamma and tau [Polynucleobacter
           necessarius subsp. necessarius STIR1]
 gi|171192928|gb|ACB43889.1| DNA polymerase III, subunits gamma and tau [Polynucleobacter
           necessarius subsp. necessarius STIR1]
          Length = 558

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 50/268 (18%), Positives = 96/268 (35%), Gaps = 34/268 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T  E  GQ      L   ++  +     L H  LF G  G+GKTT+A+++A+ L   
Sbjct: 11  RPKTFSELVGQDHVVKALTHALDQGR-----LHHAWLFTGTRGVGKTTIARIMAKALNCT 65

Query: 82  FRSTSGPVIAKA-GDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAMEDFQ 133
               SG + ++  G   A +     R V +I+        +  ++ ++E+  Y       
Sbjct: 66  GADGSGKMTSEPCGKCPACMEIDAGRFVDYIEMDAASNRGVDDIASLLEKAAYAPSNGRY 125

Query: 134 LDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
              ++ E             ++++        I ATT    +   +  R  +   L    
Sbjct: 126 KVYVIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTILSRC-LQFNLKQMP 184

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +  +   +++      +     A   +A  ++G+ R A  L  +   +A    A  +  E
Sbjct: 185 VPLIVEHLEKVLASEKMEYEVNALRVLAKAAQGSMRDALSLTDQAIAYA----AGKVIEE 240

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIA 272
                L  L       D   +R L  + 
Sbjct: 241 SVRGMLGTLD------DAYLIRILDCLI 262


>gi|123443301|ref|YP_001007275.1| DNA polymerase III subunits gamma and tau [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122090262|emb|CAL13128.1| DNA polymerase III subunit Tau (contains DNA polymerase III subunit
           Gamma) [Yersinia enterocolitica subsp. enterocolitica
           8081]
          Length = 656

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 49/251 (19%), Positives = 91/251 (36%), Gaps = 29/251 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+ L    
Sbjct: 11  RPKTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCET 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILY------PAMEDFQL 134
             T+ P     G  A  L   + R  D++ ID   R  +     L       PA   F++
Sbjct: 67  GITATP----CGTCANCLEIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKV 122

Query: 135 DLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            L+               ++++   +    + ATT    L   +  R  +   L   ++E
Sbjct: 123 YLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRC-LQFHLKVIDVE 181

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
            ++  +++      ++    A   +A  + G+ R A  L     D A       +T    
Sbjct: 182 VIRAQLEKILLAEQISSDARALQLLARAADGSMRDALSL----ADQAIAMGDGHVTTATV 237

Query: 247 DAALLRLAIDK 257
              L  L  ++
Sbjct: 238 SQMLGILDDEQ 248


>gi|326429974|gb|EGD75544.1| replication factor C 4 [Salpingoeca sp. ATCC 50818]
          Length = 345

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 44/256 (17%), Positives = 77/256 (30%), Gaps = 44/256 (17%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   +   RPRT  +   Q +  + L+  I  A      + H+LF GPPG GKT+    +
Sbjct: 22  EKPWVEKYRPRTTADVAHQSQVIATLRATISGAD-----MPHLLFYGPPGTGKTSTILAL 76

Query: 75  ARE------LGVNFRSTSGPVIAKAGDLAALLTNLE--------------DRDVLFIDEI 114
           +RE      +       +         +   +                     ++ +DE 
Sbjct: 77  SRELFGPQLMKERVLELNASDERGISVVREKIKTFASTSVSKGVDGYPCPPFKIIILDEA 136

Query: 115 HRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRF 174
             ++   +  L   ME +                 N++RF        +  +  PL  R 
Sbjct: 137 DAMTAAAQSALRRTMEKYS----------------NVTRF--CLICNYISRIIEPLASRC 178

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
               R      + L   +Q       +  +DE    I     G  R A   L+       
Sbjct: 179 A-KFRFKPLSRDTLVGRLQHIRDKEDVQCSDEVLARIIDLVDGDMRQAITFLQSASRLCG 237

Query: 235 VAHAKTITREIADAAL 250
            +  +    E    A+
Sbjct: 238 SSGVEVHHVEEIAGAI 253


>gi|294846008|gb|ADF43166.1| RFC4m [Chlamydomonas reinhardtii]
          Length = 332

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 48/248 (19%), Positives = 78/248 (31%), Gaps = 44/248 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+ + E   Q E  + L   +E A      L H+LF GPPG GKT+ A  +AR
Sbjct: 5   PWVEKYRPKNVSEVAYQEEVVNTLTRALETA-----NLPHLLFYGPPGTGKTSTALAIAR 59

Query: 77  -------------ELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHR 116
                        EL  +       V  K    AA                +L +DE   
Sbjct: 60  QLYGPELMKSRVLELNASDERGIHVVREKVKAFAATAVGAPVPGYPCPPYKLLILDEADS 119

Query: 117 LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
           ++   +  L   ME +                  ++RF  I     V  +  PL  R   
Sbjct: 120 MTQDAQNALRRTMETYS----------------RVTRFVFIC--NYVSRIIEPLASRCA- 160

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
             R    +   +   ++   +   + +   A   ++  S G  R A   L+         
Sbjct: 161 KFRFKPLQPAIMAGRIEHICERESVTLGPGALDTLSAVSGGDLRRAINTLQSAARLGAGH 220

Query: 237 HAKTITRE 244
             +    +
Sbjct: 221 VDRATLLD 228


>gi|219127681|ref|XP_002184059.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217404290|gb|EEC44237.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 349

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 77/226 (34%), Gaps = 38/226 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RPR LE+  G  E  S L+     A +R   L +++  GPPG GKTT    +AR
Sbjct: 33  PWVEKYRPRVLEDVVGNEETVSRLR-----AISRTGNLPNLILAGPPGTGKTTSVHALAR 87

Query: 77  E-----LGVNFRSTSGPVIAKAGDLAALLTNL---------EDRDVLFIDEIHRLSIIVE 122
           +             +         +   + +              ++ +DE   ++   +
Sbjct: 88  QLLGASYKDAVLELNASDARGIDVVRNRIKSFAMNKVTLPPGRHKIIILDEADSMTSAAQ 147

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           + L   ME +                 N +RF    A      +   +Q R  I      
Sbjct: 148 QALRRTMELYS----------------NTTRF--CLACNVSTKIIEAIQSRAAILRYSRL 189

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
              + L  +++   +   ++ T++A   I   + G  R A   L+ 
Sbjct: 190 ANEQVLTCLLK-VCQAESISYTNDALEAILFTAEGDMRHALNNLQA 234


>gi|254431925|ref|ZP_05045628.1| DNA polymerase III, gamma and tau subunit [Cyanobium sp. PCC 7001]
 gi|197626378|gb|EDY38937.1| DNA polymerase III, gamma and tau subunit [Cyanobium sp. PCC 7001]
          Length = 645

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 86/221 (38%), Gaps = 19/221 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  ++  GQ    + +   + + +         LF GP G GKT+ A+++AR L    
Sbjct: 13  RPQRFDQLVGQEAIAATMANALRSGRIA----PAYLFSGPRGTGKTSSARILARSLNCTA 68

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
            +   P      +L   +      DV+ ID      +  +  ++E   +  ++      +
Sbjct: 69  AAGPTPDPCGRCELCTTIAAGNALDVIEIDAASNTGVDNIRELIERSRFAPVQARWKVYV 128

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           V E             ++++    +   + ATT    +   +  R           +E L
Sbjct: 129 VDECHMLSTAAFNALLKTLEEPPPQVVFVLATTDPQRVLPTILSRCQ-RFDFRRIPLESL 187

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           +  ++  A    +A+T EA   +A R++G  R A  LL ++
Sbjct: 188 EGHLRWIAAEEAIAITPEALHVVAQRAQGGLRDAESLLDQL 228


>gi|83589006|ref|YP_429015.1| endopeptidase La [Moorella thermoacetica ATCC 39073]
 gi|83571920|gb|ABC18472.1| Endopeptidase La [Moorella thermoacetica ATCC 39073]
          Length = 655

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 64/258 (24%), Positives = 97/258 (37%), Gaps = 57/258 (22%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +  LRPR LEE  GQ +A  ++      AK  +    H++  GPPG+GKTT A++   E 
Sbjct: 170 MEALRPRRLEEIVGQEQAVQSI-----LAKLASPYPQHMIIYGPPGVGKTTAARLALEEA 224

Query: 79  ----------------------GVNFRSTSGPVIAKA---------GDLAA--------- 98
                                   + R  + P++             DLA          
Sbjct: 225 RKISSSPFKASAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAENGVPEPKLG 284

Query: 99  LLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG-EGPSARSVKINLSR---- 153
           L+T      VLFIDEI  +  ++   L   +ED +++       P+  SV   + +    
Sbjct: 285 LVTEAHGG-VLFIDEIGEMDPLLLNKLLKVLEDKRVEFDSSYYDPNDESVPQYIKKLFTE 343

Query: 154 -----FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAA 208
                F LI ATTR     NP        +        D++TIV+ GA   G+ +     
Sbjct: 344 GAPADFILIGATTREPEEINPALRSRCAEVFFEPLTPADVETIVREGAGRLGVKLEPAVP 403

Query: 209 CEIAMRSRGTPRIAGRLL 226
             IA  +    R A  +L
Sbjct: 404 GLIAEYT-IEGRKAINIL 420


>gi|317036017|ref|XP_001397471.2| replication factor C subunit 3 [Aspergillus niger CBS 513.88]
          Length = 396

 Score = 66.3 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 81/228 (35%), Gaps = 15/228 (6%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
                   +   RP TLE+ +G  +  + +  F+EA +     L H+L  GPPG GKT+ 
Sbjct: 39  EAQDNLPWVEKYRPNTLEDVSGHQDILATINKFVEANR-----LPHLLLYGPPGTGKTST 93

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAAL-LTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
              +AR +          +   A D   + +   + +      +I  ++          +
Sbjct: 94  ILALARRIYGAKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMAPSSTSTSSSTL 153

Query: 130 EDFQLDLMVGEGPSARSVKINLSRF--------TLIAATTRVGLLTNPLQDRFGIPIRLN 181
             ++L ++        + ++ L R                    L+  L  R     R +
Sbjct: 154 ASYKLIILDEADAMTATAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRC-TRFRFS 212

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
             +  D++ +V    +   + +  EA   +   S+G  R A  +L+  
Sbjct: 213 PLKEADIRVLVDIVIEKEQVNIQPEAVDSLVRLSKGDMRRALNVLQAC 260


>gi|253580411|ref|ZP_04857676.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848141|gb|EES76106.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 539

 Score = 66.3 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 78/230 (33%), Gaps = 21/230 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP    +  GQ    + L                 LF G  G GKTT+A+++A+
Sbjct: 5   ALYRKFRPDNFADVKGQDHIVTTL----TNQIKHNRIGHAYLFCGTRGTGKTTVAKILAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +         P    A  +   +      +V+ ID      +  +  I EE+ Y   E 
Sbjct: 61  AVNCEHPVNGSPCNECA--MCKAIQAGTAMNVIEIDAASNNGVDNIREIREEVSYRPTEG 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++   S    I ATT    +   +  R       + 
Sbjct: 119 KYKVYIIDEVHMLSTGAFNALLKTLEEPPSYVMFILATTEAHKIPITILSRCQ-RYDFHR 177

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
             I+ +   +    K+ G+   ++A   +A    G+ R A  LL +   F
Sbjct: 178 ITIDTIAARLDELLKVEGVEAEEKAVRYVAKAGDGSMRDALSLLDQCIAF 227


>gi|193676219|ref|XP_001942989.1| PREDICTED: replication factor C subunit 5-like [Acyrthosiphon
           pisum]
          Length = 329

 Score = 66.3 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 42/241 (17%), Positives = 78/241 (32%), Gaps = 39/241 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP TL++     +    +  FI+      + L H+LF GPPG GKT+     A+
Sbjct: 9   PWVEKYRPNTLDDLISHEDIIQTIGKFIK-----EDQLPHLLFYGPPGTGKTSTILACAK 63

Query: 77  ELGVNFRSTSGPVIAKAGDLAAL-------LTNLEDRDVL-------FIDEIHRLSIIVE 122
           +L    +  S  +   A D   +       L     R +         +DE   ++   +
Sbjct: 64  QLYTPAQFRSMVLELNASDDRGINVVRGQVLNFASTRTIFKSGFKLIILDEADAMTNDAQ 123

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             L   +E F                              +  +   LQ R     R   
Sbjct: 124 NALRRIIEKFT------------------DNVRFCLICNYLSKIIPALQSRC-TRFRFGP 164

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD-FAEVAHAKTI 241
            + + +   ++   +   + VT++    +   ++G  R    +L+     F EV      
Sbjct: 165 LDSKQIMPRLEYVVEQEKVKVTEDGKKALIDLAQGDMRKVLNILQSAATAFPEVNEDSVY 224

Query: 242 T 242
           T
Sbjct: 225 T 225


>gi|120406477|ref|YP_956306.1| DNA polymerase III subunits gamma and tau [Mycobacterium
           vanbaalenii PYR-1]
 gi|119959295|gb|ABM16300.1| DNA polymerase III, tau subunit [Mycobacterium vanbaalenii PYR-1]
          Length = 643

 Score = 66.3 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 46/237 (19%), Positives = 83/237 (35%), Gaps = 23/237 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T  +  GQ      L   + + +         LF GP G GKT+ A+++AR
Sbjct: 2   ALYRKYRPATFADVVGQEHVTEPLSTALNSGRINHAY----LFSGPRGCGKTSSARILAR 57

Query: 77  ELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PA 128
            L      T+ P  V      LA       + DV+ +D      +     L       PA
Sbjct: 58  SLNCAEGPTATPCGVCDSCVALAP--NGPGNVDVVELDAASHGGVDDTRELRDRAFYAPA 115

Query: 129 MEDFQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
              +++ ++         G     + V+        + ATT    +   ++ R       
Sbjct: 116 QSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFVFATTEPEKVLPTIRSR-THHYPF 174

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                + ++T++++      + V D     +     G+PR    +L ++   AE  H
Sbjct: 175 RLLAPKTMRTLIEKIVASESVRVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAEDDH 231


>gi|228950570|ref|ZP_04112706.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|229067786|ref|ZP_04201105.1| DNA polymerase III subunit gamma/tau [Bacillus cereus F65185]
 gi|229077295|ref|ZP_04209978.1| DNA polymerase III subunit gamma/tau [Bacillus cereus Rock4-2]
 gi|228706018|gb|EEL58323.1| DNA polymerase III subunit gamma/tau [Bacillus cereus Rock4-2]
 gi|228715339|gb|EEL67196.1| DNA polymerase III subunit gamma/tau [Bacillus cereus F65185]
 gi|228809113|gb|EEM55596.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 562

 Score = 66.3 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 69/209 (33%), Gaps = 42/209 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+  E+  GQ      L+  +       E + H  LF GP G GKTT+A+V A+ +   
Sbjct: 11  RPQKFEDVVGQKHVTKTLQNAL-----LQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCE 65

Query: 82  F------------------------RSTSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                                ++  +   ++      +  V  I
Sbjct: 66  HAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKVYII 125

Query: 112 DEIHRLSIIVEEILYPAMED--FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+H LS+     L   +E+    +  ++      +     +SR              N 
Sbjct: 126 DEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKIS---VND 182

Query: 170 LQDRFGIPIRLNFYEIEDLK-TIVQRGAK 197
           + +R    +     ++ED    IV R A+
Sbjct: 183 IVERLSTVVTNEGTQVEDEALQIVARAAE 211


>gi|329956773|ref|ZP_08297342.1| DNA polymerase III, subunit gamma and tau [Bacteroides clarus YIT
           12056]
 gi|328523812|gb|EGF50899.1| DNA polymerase III, subunit gamma and tau [Bacteroides clarus YIT
           12056]
          Length = 647

 Score = 66.3 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 49/238 (20%), Positives = 79/238 (33%), Gaps = 20/238 (8%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           + N+          RP T E   GQ    + LK  I   K         LF GP G+GKT
Sbjct: 38  TLNMENYIVSARKYRPSTFESVVGQRALTTTLKNAIATGKLAHAY----LFCGPRGVGKT 93

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL--- 125
           T A++ A+ +     +  G    +     A        ++  +D     S+     L   
Sbjct: 94  TCARIFAKTINCMAPTAEGEACNQCESCTA-FNEQRSYNIHELDAASNNSVDDIRQLVEQ 152

Query: 126 --YPAMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRF 174
              P         ++ E             ++++        I ATT    +   +  R 
Sbjct: 153 VRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRC 212

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
            I    N   +ED    +   A   G+    EA   IA+++ G  R A  +  +V  F
Sbjct: 213 QI-YDFNRIGVEDTVAHLAYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSF 269


>gi|325294717|ref|YP_004281231.1| DNA polymerase III, subunits gamma and tau [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065165|gb|ADY73172.1| DNA polymerase III, subunits gamma and tau [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 463

 Score = 66.3 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 46/240 (19%), Positives = 74/240 (30%), Gaps = 53/240 (22%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
              RP    E TGQ    + LK  I+  +         +F GP G+GKTT A++VA+ L 
Sbjct: 8   RKYRPSKFSEVTGQEYITNTLKNAIKTGRFAHAY----VFAGPRGVGKTTTARIVAKALN 63

Query: 80  VNFRST------------------------SGPVIAKAGDLAALLTNL------EDRDVL 109
                                                   +  L  ++        + V 
Sbjct: 64  CESLIDGEPCNECSNCQAISKGSFPDVIEIDAATNRGIDQIRELRESVNYAPVKGKKKVY 123

Query: 110 FIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
            IDE H L+      L   +E+                         I ATT +  +   
Sbjct: 124 IIDEFHMLTKEAFNALLKTLEE------------------PPEHVVFILATTEIDKIPPT 165

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           +  R    +       + +   ++R  +   ++  +EA   IA  S G  R A  LL + 
Sbjct: 166 ILSRCQKFVFRRI-PKDLMVETLKRICEKEDVSYEEEALYLIATASEGCMRDAESLLDQA 224


>gi|323303728|gb|EGA57514.1| Afg2p [Saccharomyces cerevisiae FostersB]
 gi|323307896|gb|EGA61156.1| Afg2p [Saccharomyces cerevisiae FostersO]
          Length = 780

 Score = 66.3 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 81/226 (35%), Gaps = 30/226 (13%)

Query: 16  DADISLLR------PR-TLEEFTGQVEACSNLKVFIEA--------AKARAEALDHVLFV 60
           D   S +R      P+    +  GQ E  + +K  I+         A+    A   VL  
Sbjct: 497 DIRPSAMREIFLEMPKVYWSDIGGQEELKTKMKEMIQLPLEASETFARLGISAPKGVLLY 556

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DVLFID 112
           GPPG  KT  A+ +A E G+NF +  GP I     G+    +  +  +       ++F D
Sbjct: 557 GPPGCSKTLTAKALATESGINFLAVKGPEIFNKYVGESERAIREIFRKARSAAPSIIFFD 616

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           EI  LS   +     A       L+             L    ++AAT R   +   L  
Sbjct: 617 EIDALSPDRDGSSTSAANHVLTSLLNEIDGVEE-----LKGVVIVAATNRPDEIDAALLR 671

Query: 173 --RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSR 216
             R    I +   ++     I+++  K      +     E+A R+ 
Sbjct: 672 PGRLDRHIYVGPPDVNARLEILKKCTKKFNTEESGVDLHELADRTE 717



 Score = 50.5 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 73/224 (32%), Gaps = 22/224 (9%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVA 75
           P +     G  +   +LK  IE    +              +L  GPPG GKT L +VVA
Sbjct: 241 PLSYAAVGGLDKEIESLKSAIEIPLHQPTLFSSFGVSPPRGILLHGPPGTGKTMLLRVVA 300

Query: 76  RELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYP 127
                +  + +GP I           L  +          ++FIDEI  ++         
Sbjct: 301 NTSNAHVLTINGPSIVSKYLGETEAALRDIFNEARKYQPSIIFIDEIDSIAPNRANDDSG 360

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
            +E   +  ++              +  +IAAT R   +   L+   RF   + +   ++
Sbjct: 361 EVESRVVATLLTL----MDGMGAAGKVVVIAATNRPNSVDPALRRPGRFDQEVEIGIPDV 416

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           +    I+ +             +  I   +  T    G  L  +
Sbjct: 417 DARFDILTKQFSRMSSDRHVLDSEAIKYIASKTHGYVGADLTAL 460


>gi|320163538|gb|EFW40437.1| replication factor C 5 [Capsaspora owczarzaki ATCC 30864]
          Length = 348

 Score = 66.3 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 79/233 (33%), Gaps = 38/233 (16%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           + + ++    +   RP +L+E     +  S +  FI       + + H+LF GPPG GKT
Sbjct: 22  AASTNKNLPWVEKYRPSSLDELISHKDIISTIDRFIT-----EDRVPHLLFYGPPGTGKT 76

Query: 69  TLAQVVAR------------ELGVNFRSTSGPVIAKAGDLA--ALLTNLEDRDVLFIDEI 114
           +     A+            EL  +     G V  +  + A    +T+     ++ +DE 
Sbjct: 77  STILACAKKMYGNRMQSMVLELNASDDRGIGVVREQIKEFASTRTITSSGGTKLVILDEA 136

Query: 115 HRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRF 174
             ++   +  L   +E +                              V  +T  +Q R 
Sbjct: 137 DAMTSDAQAALRRVIEKY------TRNTRF------------CLICNYVSKITPAIQSRC 178

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
               R      E +   +    +   + VTD+    +   ++G  R    +L+
Sbjct: 179 -TRFRFAPLSSEQMLDRLNFVIESERVNVTDDGKAALMRLAQGDMRKVLNILQ 230


>gi|312862742|ref|ZP_07722982.1| DNA polymerase III, subunit gamma and tau [Streptococcus
           vestibularis F0396]
 gi|311101602|gb|EFQ59805.1| DNA polymerase III, subunit gamma and tau [Streptococcus
           vestibularis F0396]
          Length = 550

 Score = 66.3 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 55/258 (21%), Positives = 92/258 (35%), Gaps = 27/258 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     R +T  E  GQ    + L+  +E+ K         LF GP G GKT+ A++ A+
Sbjct: 4   ALYRKYRSQTFGEMVGQKVISTTLRQAVESGKISHAY----LFSGPRGTGKTSAAKIFAK 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +    +    P      D+   +TN    DV+ ID      +  +  I ++  Y     
Sbjct: 60  AMNCPNQVDGEPCNHC--DICRDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRA 117

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQD---RFGIPIR 179
                ++ E             ++++        I ATT +  +   +     RF     
Sbjct: 118 TYKVYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSI 177

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
                 E L +I++      GL   DEA   IA R+ G  R A  +L +    +   H  
Sbjct: 178 KQGAIKEHLASILE----KEGLTFDDEALTIIARRAEGGMRDALSILDQALSLSPDNHVS 233

Query: 240 TITREIADAALLRLAIDK 257
               E    ++   A+D 
Sbjct: 234 QAVAEEITGSIGLTALDS 251


>gi|289679612|ref|ZP_06500502.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv.
           syringae FF5]
          Length = 212

 Score = 66.3 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 49/217 (22%), Positives = 70/217 (32%), Gaps = 55/217 (25%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPR+  E  GQ      LK  I A    ++ L H  LF G  G+GKTT+A+++A+ L   
Sbjct: 11  RPRSFREMVGQAHV---LKALINA--LDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNCE 65

Query: 82  FRSTS------------------------GPVIAKAGDLAALLTNLE------DRDVLFI 111
              TS                             K  D   LL N++         V  I
Sbjct: 66  TGITSTPCGTCSVCKEIDEGRFVDLIEIDAASRTKVEDTRELLDNVQYAPSRGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         I ATT    L   + 
Sbjct: 126 DEVHMLSSHSFNALLKTLEE------------------PPPYVKFILATTDPQKLPATIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAA 208
            R  +   L     E +   +     +  +   D+A 
Sbjct: 168 SRC-LQFSLKNMTPERVVEHLTHVLGVENVPFEDDAL 203


>gi|256269128|gb|EEU04463.1| Afg2p [Saccharomyces cerevisiae JAY291]
          Length = 780

 Score = 66.3 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 81/226 (35%), Gaps = 30/226 (13%)

Query: 16  DADISLLR------PR-TLEEFTGQVEACSNLKVFIEA--------AKARAEALDHVLFV 60
           D   S +R      P+    +  GQ E  + +K  I+         A+    A   VL  
Sbjct: 497 DIRPSAMREIFLEMPKVYWSDIGGQEELKTKMKEMIQLPLEASETFARLGISAPKGVLLY 556

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DVLFID 112
           GPPG  KT  A+ +A E G+NF +  GP I     G+    +  +  +       ++F D
Sbjct: 557 GPPGCSKTLTAKALATESGINFLAVKGPEIFNKYVGESERAIREIFRKARSAAPSIIFFD 616

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           EI  LS   +     A       L+             L    ++AAT R   +   L  
Sbjct: 617 EIDALSPDRDGSSTSAANHVLTSLLNEIDGVEE-----LKGVVIVAATNRPDEIDAALLR 671

Query: 173 --RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSR 216
             R    I +   ++     I+++  K      +     E+A R+ 
Sbjct: 672 PGRLDRHIYVGPPDVNARLEILKKCTKKFNTEESGVDLHELADRTE 717



 Score = 50.5 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 73/224 (32%), Gaps = 22/224 (9%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVA 75
           P +     G  +   +LK  IE    +              +L  GPPG GKT L +VVA
Sbjct: 241 PLSYAAVGGLDKEIESLKSAIEIPLHQPTLFSSFGVSPPRGILLHGPPGTGKTMLLRVVA 300

Query: 76  RELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYP 127
                +  + +GP I           L  +          ++FIDEI  ++         
Sbjct: 301 NTSNAHVLTINGPSIVSKYLGETEAALRDIFNEARKYQPSIIFIDEIDSIAPNRANDDSG 360

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
            +E   +  ++              +  +IAAT R   +   L+   RF   + +   ++
Sbjct: 361 EVESRVVATLLTL----MDGMGVAGKVVVIAATNRPNSVDPALRRPGRFDQEVEIGIPDV 416

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           +    I+ +             +  I   +  T    G  L  +
Sbjct: 417 DARFDILTKQFSRMSSDRHVLDSEAIKYIASKTHGYVGADLTAL 460


>gi|213512735|ref|NP_001134241.1| replication factor C subunit 4 [Salmo salar]
 gi|209731766|gb|ACI66752.1| Replication factor C subunit 4 [Salmo salar]
          Length = 355

 Score = 66.3 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 60/303 (19%), Positives = 103/303 (33%), Gaps = 49/303 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+ +EE   Q E  + LK  IE A      L ++LF GPPG GKT+     AR
Sbjct: 33  PWVEKYRPKCMEEVAFQEEVVAVLKKTIEGAD-----LPNLLFYGPPGTGKTSTILAAAR 87

Query: 77  E------LGVNFRSTSGP------VIAKAGDLAALLTNLEDRD---------VLFIDEIH 115
           E              +        V+ +     A LT    R          ++ +DE  
Sbjct: 88  ELYGPELYRQRVLELNASDERGIQVVREKVKRFAQLTVAGHRTDGKPCPPFKIIILDEAD 147

Query: 116 RLSIIVEEILYPAM--EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
            ++   +  L   M  E       +     +R ++   SR +      R   L N +Q+ 
Sbjct: 148 SMTNAAQAALRRTMEKESRTTRFCLICNYISRIIEPLTSRCSKF----RFKPLANQVQEE 203

Query: 174 FGIPIRLNF---YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
             + I       Y  E +  +V+        A+T     + A R      I         
Sbjct: 204 RLLDICDKENLKYSKEGIAALVKVSEGDLRKAIT---FLQSAARLNTDNEIT-------- 252

Query: 231 DFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
           + A +  A  +  ++ D  L      K  F++L++    M+   +    + I  +   + 
Sbjct: 253 ESAVIEIAGVVPPKMIDNLLKIC--YKGTFEKLEIAVRNMVDEGYAATQI-INQLHEAII 309

Query: 291 EPR 293
           E  
Sbjct: 310 EEE 312


>gi|197334811|ref|YP_002156506.1| DNA polymerase III subunit tau [Vibrio fischeri MJ11]
 gi|197316301|gb|ACH65748.1| DNA polymerase III subunit tau [Vibrio fischeri MJ11]
          Length = 709

 Score = 66.3 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 59/279 (21%), Positives = 88/279 (31%), Gaps = 63/279 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP   ++  GQ    + L    E A          LF G  G+GKTT+A++ A+ L    
Sbjct: 11  RPHHFKDVVGQPHVLTAL----ENALDHNRLHHAYLFSGTRGVGKTTIARLFAKGLNCEE 66

Query: 83  RSTS------------------------GPVIAKAGDLAALLTNLEDRD------VLFID 112
             TS                             K  D   LL N++ +       V  ID
Sbjct: 67  GITSTPCGVCSTCKEIDEGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRFKVYLID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS      L   +E+                         + ATT    L   +  
Sbjct: 127 EVHMLSRHSFNALLKTLEE------------------PPEYVKFLLATTDPQKLPVTILS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R  +   L    ++ +   +        ++    A   IA  + G+ R A  L     D 
Sbjct: 169 RC-LQFHLKHISVDQIHEQLDFVLDKEEVSKEARALGLIAHAADGSMRDALSL----TDQ 223

Query: 233 AEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMI 271
           A      ++T EI  A L  L  D+       +R L  I
Sbjct: 224 AIALGNGSVTAEIVSAMLGTLDTDQA------IRILEAI 256


>gi|206978353|ref|ZP_03239227.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus
           H3081.97]
 gi|217957599|ref|YP_002336141.1| DNA polymerase III subunits gamma and tau [Bacillus cereus AH187]
 gi|228983278|ref|ZP_04143493.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229136866|ref|ZP_04265495.1| DNA polymerase III subunit gamma/tau [Bacillus cereus BDRD-ST26]
 gi|206743445|gb|EDZ54878.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus
           H3081.97]
 gi|217064851|gb|ACJ79101.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus AH187]
 gi|228646601|gb|EEL02806.1| DNA polymerase III subunit gamma/tau [Bacillus cereus BDRD-ST26]
 gi|228776458|gb|EEM24809.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 562

 Score = 66.3 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 69/209 (33%), Gaps = 42/209 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+  E+  GQ      L+  +       E + H  LF GP G GKTT+A+V A+ +   
Sbjct: 11  RPQKFEDVVGQKHVTKTLQNAL-----LQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCE 65

Query: 82  F------------------------RSTSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                                ++  +   ++      +  V  I
Sbjct: 66  HAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKVYII 125

Query: 112 DEIHRLSIIVEEILYPAMED--FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+H LS+     L   +E+    +  ++      +     +SR              N 
Sbjct: 126 DEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKIS---VND 182

Query: 170 LQDRFGIPIRLNFYEIEDLK-TIVQRGAK 197
           + +R    +     ++ED    IV R A+
Sbjct: 183 IVERLSTVVNNEGTQVEDEALQIVARAAE 211


>gi|151940918|gb|EDN59300.1| ATPase family protein [Saccharomyces cerevisiae YJM789]
          Length = 780

 Score = 66.3 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 81/226 (35%), Gaps = 30/226 (13%)

Query: 16  DADISLLR------PR-TLEEFTGQVEACSNLKVFIEA--------AKARAEALDHVLFV 60
           D   S +R      P+    +  GQ E  + +K  I+         A+    A   VL  
Sbjct: 497 DIRPSAMREIFLEMPKVYWSDIGGQEELKTKMKEMIQLPLEASETFARLGISAPKGVLLY 556

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DVLFID 112
           GPPG  KT  A+ +A E G+NF +  GP I     G+    +  +  +       ++F D
Sbjct: 557 GPPGCSKTLTAKALATESGINFLAVKGPEIFNKYVGESERAIREIFRKARSAAPSIIFFD 616

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           EI  LS   +     A       L+             L    ++AAT R   +   L  
Sbjct: 617 EIDALSPDRDGSSTSAANHVLTSLLNEIDGVEE-----LKGVVIVAATNRPDEIDAALLR 671

Query: 173 --RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSR 216
             R    I +   ++     I+++  K      +     E+A R+ 
Sbjct: 672 PGRLDRHIYVGPPDVNARLEILKKCTKKFNTEESGVDLHELADRTE 717



 Score = 50.5 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 73/224 (32%), Gaps = 22/224 (9%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVA 75
           P +     G  +   +LK  IE    +              +L  GPPG GKT L +VVA
Sbjct: 241 PLSYAAVGGLDKEIESLKSAIEIPLHQPTLFSSFGVSPPRGILLHGPPGTGKTMLLRVVA 300

Query: 76  RELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYP 127
                +  + +GP I           L  +          ++FIDEI  ++         
Sbjct: 301 NTSNAHVLTINGPSIVSKYLGETEAALRDIFNEARKYQPSIIFIDEIDSIAPNRANDDSG 360

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
            +E   +  ++              +  +IAAT R   +   L+   RF   + +   ++
Sbjct: 361 EVESRVVATLLTL----MDGMGAAGKVVVIAATNRPNSVDPALRRPGRFDQEVEIGIPDV 416

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           +    I+ +             +  I   +  T    G  L  +
Sbjct: 417 DARFDILTKQFSRMSSDRHVLDSEAIKYIASKTHGYVGADLTAL 460


>gi|149924601|ref|ZP_01912956.1| DNA polymerase III, gamma and tau subunits [Plesiocystis pacifica
           SIR-1]
 gi|149814526|gb|EDM74111.1| DNA polymerase III, gamma and tau subunits [Plesiocystis pacifica
           SIR-1]
          Length = 747

 Score = 66.3 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 82/243 (33%), Gaps = 25/243 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP+   +  GQ      L+  I++ +         LF G  GLGKTT A+++A+
Sbjct: 5   ALARKYRPQRFADMIGQEHVTRTLENAIKSDRVHHAY----LFCGVRGLGKTTAARILAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSII------VEEILYPA 128
            L        GP           +   E R  DV+ ID     S+        +    P 
Sbjct: 61  CLVCEH----GPTPEPCNQCVHCVGINEGRSVDVIEIDGASNNSVDDIRSLRDQVHYLPQ 116

Query: 129 MEDFQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +   ++ ++               ++++      T + ATT    +   +  R       
Sbjct: 117 IARRKIYIIDEVHMLTQAAFNALLKTLEEPPPHVTFLFATTDPHKVLPTILSRVSRLDYR 176

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
                  L   +Q   +  G AV  E    IA    G+ R +  LL +V  FA    A T
Sbjct: 177 RV-RAATLVPYLQFILEQEGFAVEPEGLYVIARCGDGSVRDSLTLLDKVIAFAHDPKAIT 235

Query: 241 ITR 243
              
Sbjct: 236 GEE 238


>gi|45357885|ref|NP_987442.1| replication factor C large subunit [Methanococcus maripaludis S2]
 gi|50400880|sp|Q6M0E9|RFCL_METMP RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|45047445|emb|CAF29878.1| replication factor C, large subunit [Methanococcus maripaludis S2]
          Length = 486

 Score = 66.3 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 54/299 (18%), Positives = 101/299 (33%), Gaps = 44/299 (14%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +  +   RP++L +  G  +    L  +IE+          +L  GPPG GKTTLA  +A
Sbjct: 2   EEWVEKYRPKSLNDVAGHNKTKQALIEWIESIIGGQNQKP-ILLAGPPGSGKTTLAYAIA 60

Query: 76  RELGVNFRSTSGP------VIAKAGDLAALLTNL-EDRDVLFIDEIHRLSIIVEEILYPA 128
            +   +    +        VI++    AA   +L   R ++ +DE+  LS   +      
Sbjct: 61  NDYAFDVIELNASDKRNKDVISQVVGTAATSKSLTGRRTLIVLDEVDGLSGNDD------ 114

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI-PIRLNFYEIED 187
                       G  A  +K+  +    +  T         +  R  +  I +       
Sbjct: 115 -----------RGGVAEIIKVLKTAENPVILTANDVYKPALMTLRNSVNLINVGSVHTNS 163

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD--FAEVAHAKTITREI 245
           +  +++R A   G  + ++    IA  S G  R A   L+ +      E+  AK +    
Sbjct: 164 IPPVLRRIALKEGFEIDEKIIKMIASHSGGDLRAAINDLQSLATGGSIEIEDAKELPDRD 223

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           ++ ++       M     D+                       + E    IE+ I   +
Sbjct: 224 SEKSIFDAMRIIMKTTHYDIATSATR----------------DVKEDIGTIEEWISENL 266


>gi|254672432|emb|CBA05798.1| DNA polymerase subunits gamma and tau [Neisseria meningitidis
           alpha275]
          Length = 739

 Score = 66.3 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 50/303 (16%), Positives = 90/303 (29%), Gaps = 63/303 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T  +  GQ      L+  ++  +     L H  L  G  G+GKTT+A+++A+ L   
Sbjct: 40  RPKTFADLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCE 94

Query: 82  FRS------------------------TSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                                ++  +L N +         V  I
Sbjct: 95  NAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTGIDNIREILENAQYAPTAGKYKVYII 154

Query: 112 DEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+H LS      +   +E+    +  ++      +     LSR                
Sbjct: 155 DEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNM------- 207

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
                           + +   +        +A    A   +   + G+ R A  LL + 
Sbjct: 208 --------------TAQQVADHLAHVLDSEKIAYEPAALQLLGRAAAGSMRDALSLLDQA 253

Query: 230 RDFAEVAHAKTITREIADAALLRLAIDKM-GFDQLDLRYLTMIARNFGGGPVGIETISAG 288
                   A+   R++  A   +   + + G    D   LT  A+      VG +     
Sbjct: 254 IALGSGKVAENDVRQMIGAVDKQYLYELLTGIINQDGAALTAKAQEMAACAVGFDN---A 310

Query: 289 LSE 291
           L E
Sbjct: 311 LGE 313


>gi|237808962|ref|YP_002893402.1| DNA polymerase III, subunits gamma and tau [Tolumonas auensis DSM
           9187]
 gi|237501223|gb|ACQ93816.1| DNA polymerase III, subunits gamma and tau [Tolumonas auensis DSM
           9187]
          Length = 760

 Score = 66.3 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 55/259 (21%), Positives = 82/259 (31%), Gaps = 59/259 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPR   E  GQ      L   ++  +     L H  LF G  G+GKTT+A+++A+ L   
Sbjct: 11  RPRNFHEVMGQQHVLQALSNALDQGR-----LHHAYLFSGTRGVGKTTIARILAKCLNCE 65

Query: 82  FRSTS------------------------GPVIAKAGDLAALLTNLEDRD------VLFI 111
              TS                             K  D   LL N++ +       +  I
Sbjct: 66  TGITSRPCGQCSACREIDQGNFVDLLEIDAASRTKVEDTRDLLDNVQYKPARGRFKIYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSRHSFNALLKTLEE------------------PPEHVKFLLATTDPQKLPVTIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L     E +   +QR  +   L     A   +A  ++G+ R A  L     D
Sbjct: 168 SRC-LQFHLKALTREQIVEQLQRVLQAEQLTYEPAALSLLAKAAQGSMRDALSL----SD 222

Query: 232 FAEVAHAKTITREIADAAL 250
            A       +  E     L
Sbjct: 223 QAIAYGNGLLQAETVQQML 241


>gi|15893259|ref|NP_360973.1| DNA polymerase III subunits gamma and tau [Rickettsia conorii str.
           Malish 7]
 gi|15620479|gb|AAL03874.1| DNA polymerase III gamma and tau chains [Rickettsia conorii str.
           Malish 7]
          Length = 509

 Score = 66.3 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 87/248 (35%), Gaps = 22/248 (8%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP    E  GQ      L   I   +         L  G  G+GKTT A+++A+ +
Sbjct: 14  ARKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGY----LLTGIRGVGKTTSARIIAKAV 69

Query: 79  GVNFRSTSGPVIAKAGDLAALLT--NLEDRDVLFIDEIHRLS-----IIVEEILYPAMED 131
             +   T    I         ++  N    D++ ID   + S      I+E   Y  ++ 
Sbjct: 70  NCSALITENTTIKTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQG 129

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT V  +   +  R      L  
Sbjct: 130 KHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQ-RYDLRR 188

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
              E++  +++   K   L    EA   IA +S G+ R A  +L +    + V     I+
Sbjct: 189 LSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDAVSILDQAASMS-VKSDNIIS 247

Query: 243 REIADAAL 250
            ++ +  L
Sbjct: 248 PQVINQML 255


>gi|54295584|ref|YP_127999.1| DNA polymerase III, gamma and tau subunits [Legionella pneumophila
           str. Lens]
 gi|53755416|emb|CAH16912.1| DNA polymerase III, gamma and tau subunits [Legionella pneumophila
           str. Lens]
 gi|307611624|emb|CBX01309.1| DNA polymerase III, gamma and tau subunits [Legionella pneumophila
           130b]
          Length = 556

 Score = 66.3 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 84/229 (36%), Gaps = 23/229 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPRT  +  GQ       K  I A   +   L H  LF G  G+GKT++A+++A+ L   
Sbjct: 11  RPRTFSQLVGQEHI---NKALINALNQQ--RLHHAYLFTGTRGVGKTSVARILAKALNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLD 135
              TS P +    D    +      D++ ID   +  +     L       P    F++ 
Sbjct: 66  KGITSEPCLHC--DTCIAIEQGRYIDLIEIDGASKTRVEDTRDLLDNIQYAPTNGRFKIY 123

Query: 136 LM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           L+               ++++   S    I ATT    L   +  R  +   L     E 
Sbjct: 124 LIDEVHMLSQHSFNALLKTLEEPPSHVKFILATTDPQKLPVTVLSRC-LQFNLKHLPAEL 182

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
           +   +Q   +   L    +A   +A  +RG+ R A  LL +     E  
Sbjct: 183 INQQLQLILQEERLDFEIQALDILARAARGSMRDALSLLDQAITSCETK 231


>gi|6323429|ref|NP_013501.1| Afg2p [Saccharomyces cerevisiae S288c]
 gi|416590|sp|P32794|AFG2_YEAST RecName: Full=ATPase family gene 2 protein
 gi|295573|gb|AAC37367.1| AFG2 [Saccharomyces cerevisiae]
 gi|625113|gb|AAB82355.1| Afg2p [Saccharomyces cerevisiae]
 gi|51013683|gb|AAT93135.1| YLR397C [Saccharomyces cerevisiae]
 gi|259148375|emb|CAY81622.1| Afg2p [Saccharomyces cerevisiae EC1118]
 gi|285813802|tpg|DAA09698.1| TPA: Afg2p [Saccharomyces cerevisiae S288c]
 gi|323332432|gb|EGA73841.1| Afg2p [Saccharomyces cerevisiae AWRI796]
 gi|323336415|gb|EGA77683.1| Afg2p [Saccharomyces cerevisiae Vin13]
 gi|323353724|gb|EGA85580.1| Afg2p [Saccharomyces cerevisiae VL3]
          Length = 780

 Score = 66.3 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 81/226 (35%), Gaps = 30/226 (13%)

Query: 16  DADISLLR------PR-TLEEFTGQVEACSNLKVFIEA--------AKARAEALDHVLFV 60
           D   S +R      P+    +  GQ E  + +K  I+         A+    A   VL  
Sbjct: 497 DIRPSAMREIFLEMPKVYWSDIGGQEELKTKMKEMIQLPLEASETFARLGISAPKGVLLY 556

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DVLFID 112
           GPPG  KT  A+ +A E G+NF +  GP I     G+    +  +  +       ++F D
Sbjct: 557 GPPGCSKTLTAKALATESGINFLAVKGPEIFNKYVGESERAIREIFRKARSAAPSIIFFD 616

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           EI  LS   +     A       L+             L    ++AAT R   +   L  
Sbjct: 617 EIDALSPDRDGSSTSAANHVLTSLLNEIDGVEE-----LKGVVIVAATNRPDEIDAALLR 671

Query: 173 --RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSR 216
             R    I +   ++     I+++  K      +     E+A R+ 
Sbjct: 672 PGRLDRHIYVGPPDVNARLEILKKCTKKFNTEESGVDLHELADRTE 717



 Score = 50.5 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 73/224 (32%), Gaps = 22/224 (9%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVA 75
           P +     G  +   +LK  IE    +              +L  GPPG GKT L +VVA
Sbjct: 241 PLSYAAVGGLDKEIESLKSAIEIPLHQPTLFSSFGVSPPRGILLHGPPGTGKTMLLRVVA 300

Query: 76  RELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYP 127
                +  + +GP I           L  +          ++FIDEI  ++         
Sbjct: 301 NTSNAHVLTINGPSIVSKYLGETEAALRDIFNEARKYQPSIIFIDEIDSIAPNRANDDSG 360

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
            +E   +  ++              +  +IAAT R   +   L+   RF   + +   ++
Sbjct: 361 EVESRVVATLLTL----MDGMGAAGKVVVIAATNRPNSVDPALRRPGRFDQEVEIGIPDV 416

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           +    I+ +             +  I   +  T    G  L  +
Sbjct: 417 DARFDILTKQFSRMSSDRHVLDSEAIKYIASKTHGYVGADLTAL 460


>gi|34581073|ref|ZP_00142553.1| DNA polymerase III gamma and tau chains [Rickettsia sibirica 246]
 gi|28262458|gb|EAA25962.1| DNA polymerase III gamma and tau chains [Rickettsia sibirica 246]
          Length = 509

 Score = 66.3 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 87/248 (35%), Gaps = 22/248 (8%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP    E  GQ      L   I   +         L  G  G+GKTT A+++A+ +
Sbjct: 14  ARKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGY----LLTGIRGVGKTTSARIIAKAV 69

Query: 79  GVNFRSTSGPVIAKAGDLAALLT--NLEDRDVLFIDEIHRLS-----IIVEEILYPAMED 131
             +   T    I         ++  N    D++ ID   + S      I+E   Y  ++ 
Sbjct: 70  NCSALITENTTIKTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQG 129

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT V  +   +  R      L  
Sbjct: 130 KHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQ-RYDLRR 188

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
              E++  +++   K   L    EA   IA +S G+ R A  +L +    + V     I+
Sbjct: 189 LSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDAVSILDQAASMS-VKSDNIIS 247

Query: 243 REIADAAL 250
            ++ +  L
Sbjct: 248 PQVINQML 255


>gi|302690912|ref|XP_003035135.1| hypothetical protein SCHCODRAFT_52161 [Schizophyllum commune H4-8]
 gi|300108831|gb|EFJ00233.1| hypothetical protein SCHCODRAFT_52161 [Schizophyllum commune H4-8]
          Length = 376

 Score = 66.3 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 42/295 (14%), Positives = 93/295 (31%), Gaps = 45/295 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+T+++ + Q    S L+  + +       L H+LF GPPG GKT+    ++R
Sbjct: 30  PWVEKYRPKTIDDVSAQEHTVSVLQKALTS-----TNLPHMLFYGPPGTGKTSTILALSR 84

Query: 77  E------LGVNFRSTSGPVIAKAGDLAALLTNLEDRD-------------------VLFI 111
           +              +         +   + N   +                    ++ +
Sbjct: 85  QLFGPDNFRSRVLELNASDERGISIVREKVKNFARQTPRAQAVASDGKEYPCPPYKIIIL 144

Query: 112 DEIHRLSIIVEEILYPAMEDFQLD--LMVGEGPSARSVKINLS-----RFTLIAATTRVG 164
           DE   ++   +  L   ME         +      R ++   S     RFT + +++   
Sbjct: 145 DEADSMTQDAQGALRRIMETHARITRFCLVCNYVTRIIEPLASRCSKFRFTPLDSSSAAA 204

Query: 165 LLTNPLQDRFGIPIRLNFYEIEDLK-TIVQRGAKLTGLAVTDEAACEI--AMRSRGTPRI 221
            L+    +            +       ++R       A    ++ +    +       I
Sbjct: 205 RLSYIATNENVAVSPPVIDTLISTSGGDLRRAITYLQSASRLSSSTDPPTPITPVDIQEI 264

Query: 222 AGRLLRRVRD-FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNF 275
           AG +   V D FA     +    +    A+    + + GF  +  +   ++   +
Sbjct: 265 AGVVPDGVIDNFARAVGIEVDGSD----AMDVDGLQRRGFQLVQSKVKEVMRDGY 315


>gi|325134576|gb|EGC57220.1| DNA polymerase III, subunits gamma and tau [Neisseria meningitidis
           M13399]
          Length = 709

 Score = 66.3 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 49/303 (16%), Positives = 90/303 (29%), Gaps = 63/303 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T  +  GQ      L+  ++  +     L H  L  G  G+GKTT+A+++A+ L   
Sbjct: 11  RPKTFSDLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCE 65

Query: 82  FRS------------------------TSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                                ++  +L N +         V  I
Sbjct: 66  NAQHGEPCGVCESCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYII 125

Query: 112 DEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+H LS      +   +E+    +  ++      +     LSR                
Sbjct: 126 DEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNM------- 178

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
                           + +   +        +A    A   +   + G+ R A  LL + 
Sbjct: 179 --------------TAQQVADHLAHVLDSEKIAYAPPALQLLGRAAAGSMRDALSLLDQA 224

Query: 230 RDFAEVAHAKTITREIADAALLRLAIDKM-GFDQLDLRYLTMIARNFGGGPVGIETISAG 288
                 + A+   R++  A   +   + + G    D   L   A+      VG +     
Sbjct: 225 IAMGSGSVAEQDVRQMIGAVDKQYLYELLTGIVNQDGEALLAKAQEMAACAVGFDN---A 281

Query: 289 LSE 291
           L E
Sbjct: 282 LGE 284


>gi|226325913|ref|ZP_03801431.1| hypothetical protein COPCOM_03726 [Coprococcus comes ATCC 27758]
 gi|225205455|gb|EEG87809.1| hypothetical protein COPCOM_03726 [Coprococcus comes ATCC 27758]
          Length = 522

 Score = 66.3 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 82/233 (35%), Gaps = 27/233 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP   E+  GQ    + LK  I+A +         LF G  G GKTT+A++ A+
Sbjct: 5   ALYRKFRPAEFEDVKGQDHIITTLKNQIKADRIGHAY----LFCGTRGTGKTTVAKIFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD---VLFID-----EIHRLSIIVEEILYPA 128
            +         P     G+   +  N+       V+ ID      +  +  I EE+ Y  
Sbjct: 61  AVNCEHPVDGSP----CGECT-MCKNIAAGTSMNVIEIDAASNNGVDNIREIREEVSYRP 115

Query: 129 MEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            E      ++ E             ++++        I ATT    +   +  R      
Sbjct: 116 TEGRYKVYIIDEVHMLSIGAFNALLKTLEEPPEYVIFILATTEAHKIPITILSRCQRYDF 175

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
                I+ +   +    K   + V ++A   IA  + G+ R A  LL +   F
Sbjct: 176 KRI-TIDTIAARLDELMKKEQVEVEEKAIRYIAKAADGSMRDALSLLDQCIAF 227


>gi|195146716|ref|XP_002014330.1| GL19009 [Drosophila persimilis]
 gi|194106283|gb|EDW28326.1| GL19009 [Drosophila persimilis]
          Length = 333

 Score = 66.3 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 41/273 (15%), Positives = 82/273 (30%), Gaps = 48/273 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP +L++     E    +  FI       + L H+L+ GPPG GKT+     AR
Sbjct: 12  PWVEKYRPYSLDDLISHDEIILTINRFIS-----QKQLPHLLYYGPPGTGKTSTILACAR 66

Query: 77  E------LGVNFRSTSGPVIAKAGDLA-ALLTNLEDRDVLF-------IDEIHRLSIIVE 122
           +              +       G +   +L     R +         +DE   ++   +
Sbjct: 67  QLYPPALFKSMVLELNASDDRGIGIVRGQILNFASTRTIFCDTFKLIILDEADAMTNDAQ 126

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             L   +E +                              +  +   LQ R     R   
Sbjct: 127 NALRRIIEKYT------------------DNVRFCIICNYLSKIIPALQSRC-TRFRFAP 167

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK--- 239
              + +   +++  +   + +T+     +   S+G  R    +L+      +V +     
Sbjct: 168 LSPDKMIPRLEQIVQSEDIKITENGKKALLTLSKGDMRKVLNVLQSTAMAFDVVNEDNVY 227

Query: 240 -------TITREIADAALLRLAIDKMGFDQLDL 265
                      E    ALL     ++ F  +D+
Sbjct: 228 MCAGYPLRQDIENILKALLSGHNFEVSFQNVDV 260


>gi|193077651|gb|ABO12483.2| DNA polymerase III tau and gamma subunits (DNA elongation factor
           III) [Acinetobacter baumannii ATCC 17978]
          Length = 702

 Score = 66.3 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 83/257 (32%), Gaps = 53/257 (20%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RPR   E  GQ          + +A  R       LF G  G+GKTT+A+++A+ L
Sbjct: 6   ARKYRPRNFNELVGQNHV----SRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCL 61

Query: 79  GVNFRSTS------------------------GPVIAKAGDLAALLTNL------EDRDV 108
                 TS                             K  D   LL N+          V
Sbjct: 62  NCETGVTSTPCEVCTTCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKV 121

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
             IDE+H LS      L   +E+                         + ATT    L  
Sbjct: 122 YLIDEVHMLSTHSFNALLKTLEE------------------PPEHVKFLFATTDPQKLPI 163

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            +  R  +   L    ++++   +    +   +A   +A  +IA  ++G+ R A  L  +
Sbjct: 164 TVISRC-LQFTLRPLAVDEITKHLGAILEKEQIAADPDAIWQIAESAQGSLRDALSLTDQ 222

Query: 229 VRDFAEVAHAKTITREI 245
              + + A      +E+
Sbjct: 223 AIAYGQGAVHHQDVKEM 239


>gi|196010307|ref|XP_002115018.1| hypothetical protein TRIADDRAFT_28707 [Trichoplax adhaerens]
 gi|190582401|gb|EDV22474.1| hypothetical protein TRIADDRAFT_28707 [Trichoplax adhaerens]
          Length = 315

 Score = 66.3 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 52/265 (19%), Positives = 92/265 (34%), Gaps = 40/265 (15%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR-- 76
           I   RP+ L+E  G  +  S L+VF     A+   L +++  GPPG GKTT    +AR  
Sbjct: 1   IEKYRPKQLDEVVGNEDTISRLEVF-----AKEGNLPNIVIAGPPGTGKTTSILCIARQL 55

Query: 77  ----------ELGVNFRSTSGPVIAKAGDLA--ALLTNLEDRDVLFIDEIHRLSIIVEEI 124
                     EL  +       V  K    A   +   L    ++ +DE   ++   ++ 
Sbjct: 56  LGTSMKDAVLELNASNDRGIDVVRNKIKMFAQKKVTLPLGKHKIIILDEADSMTDGAQQA 115

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           L   ME +                   +RF L   T+    +  P+Q R  +       +
Sbjct: 116 LRRTMEIYSKT----------------TRFALACNTSE--KIIEPIQSRCAVLRFTRLND 157

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA-GRLLRRVRDFAEVAHAKTITR 243
            + L  +++   +   +  T++    +   ++G  R A   L      F  V        
Sbjct: 158 SQILARLME-VCRQESVIATNDGLEAVIFTAQGDMRQALNNLQSTYAGFGHVNSENVFKV 216

Query: 244 EIADAALLRLAIDKMGFD-QLDLRY 267
                 LL   + +   +  +D  Y
Sbjct: 217 CDEPHPLLIKQMIQASIECNIDEAY 241


>gi|325179752|emb|CCA14155.1| ATPase putative [Albugo laibachii Nc14]
          Length = 551

 Score = 66.3 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 48/214 (22%), Positives = 80/214 (37%), Gaps = 13/214 (6%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--V 108
           VLF GPPG GKT  A+++A++ G+         +           L+ +    E  D  +
Sbjct: 334 VLFEGPPGTGKTLTARIIAQQAGIPMIHIPVEAVVSKWYGESEKKLSTIFDACEQLDGAI 393

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +FIDEI  L+      ++ A     L +++ +     S +    + T+I AT R   L  
Sbjct: 394 IFIDEIDALAGDRSGGIHEA-SRRILSVLLQKVEGFESAQ----KTTVICATNRKEDLDA 448

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            L  RF + IR +  +      I +R AK       ++ +   +  S    +       R
Sbjct: 449 ALLSRFDLCIRYDLPDQSTRTAIFKRYAKQLSDEELEKLSSLSSGLSCRAIKEICEYAER 508

Query: 229 VRDFAEVAHAKTITREIADAALLRLAIDKMGFDQ 262
                 +   K+      DA L       MG   
Sbjct: 509 KWASQVLRGEKSGNLPTIDAYLNATNAHVMGVGH 542


>gi|320009595|gb|ADW04445.1| DNA polymerase III, subunits gamma and tau [Streptomyces
           flavogriseus ATCC 33331]
          Length = 761

 Score = 66.3 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 59/175 (33%), Gaps = 26/175 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP +  E  GQ      L+  +   +         LF GP G GKTT A+++AR
Sbjct: 13  ALYRRYRPESFAEVIGQEHVTDPLQQALRNNRVNHAY----LFSGPRGCGKTTSARILAR 68

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR----DVLFIDEIHRLSII------VEEILY 126
            L        GP     G+  +      +     DV+ ID      +        +    
Sbjct: 69  CLNCE----QGPTPTPCGECQSCQDLARNGPGSIDVIEIDAASHGGVDDARDLREKAFFG 124

Query: 127 PAMEDFQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           PA   +++ ++         G     + V+        I ATT    +   ++ R
Sbjct: 125 PASSRYKIYIIDEAHMVTPAGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSR 179


>gi|331222505|ref|XP_003323926.1| replication factor C subunit 4 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309302916|gb|EFP79507.1| replication factor C subunit 4 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 310

 Score = 66.3 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 78/232 (33%), Gaps = 38/232 (16%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           +    E   +   RP  L++ TG  +    LKV      AR     H++  G PG+GKTT
Sbjct: 10  KASGAEVPWVEKYRPIILDDITGNTDTIERLKVI-----ARDGNCPHIIISGAPGIGKTT 64

Query: 70  LAQVVAR------------ELGVNFRSTSGPVIAKAGDLA--ALLTNLEDRDVLFIDEIH 115
               +A             EL  +       V  K    A   +        ++ +DE  
Sbjct: 65  SILCLAHALLGDAYKEGVLELNASDERGIDVVRNKIKTFANTKVTLPAGRHKIIILDEAD 124

Query: 116 RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
            ++   ++ L   ME +                 N +RF    A      +  P+Q R  
Sbjct: 125 SMTAGAQQALRRTMEIYS----------------NTTRF--ALACNNSSKIIEPIQSRCA 166

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
           I       + E LK +V+  A    +   ++    +   S G  R A   L+
Sbjct: 167 ILRYGKLKDQEVLKRLVE-IATAENVKYAEDGLAALIFTSEGDMRQAINNLQ 217


>gi|190405439|gb|EDV08706.1| protein AFG2 [Saccharomyces cerevisiae RM11-1a]
          Length = 780

 Score = 66.3 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 81/226 (35%), Gaps = 30/226 (13%)

Query: 16  DADISLLR------PR-TLEEFTGQVEACSNLKVFIEA--------AKARAEALDHVLFV 60
           D   S +R      P+    +  GQ E  + +K  I+         A+    A   VL  
Sbjct: 497 DIRPSAMREIFLEMPKVYWSDIGGQEELKTKMKEMIQLPLEASETFARLGISAPKGVLLY 556

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DVLFID 112
           GPPG  KT  A+ +A E G+NF +  GP I     G+    +  +  +       ++F D
Sbjct: 557 GPPGCSKTLTAKALATESGINFLAVKGPEIFNKYVGESERAIREIFRKARSAAPSIIFFD 616

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           EI  LS   +     A       L+             L    ++AAT R   +   L  
Sbjct: 617 EIDALSPDRDGSSTSAANHVLTSLLNEIDGVEE-----LKGVVIVAATNRPDEIDAALLR 671

Query: 173 --RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSR 216
             R    I +   ++     I+++  K      +     E+A R+ 
Sbjct: 672 PGRLDRHIYVGPPDVNARLEILKKCTKKFNTEESGVDLHELADRTE 717



 Score = 50.1 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 74/224 (33%), Gaps = 22/224 (9%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVA 75
           P +     G  +   +LK  IE    +              +L  GPPG GKT L +VVA
Sbjct: 241 PLSYAAVGGLDKEIESLKSAIEIPLHQPTLFSSFGVSPPRGILLHGPPGTGKTMLLRVVA 300

Query: 76  RELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYP 127
                +  + +GP I           L  +          ++FIDEI  ++         
Sbjct: 301 NTSNAHVLTINGPSIVSKYLGETEAALRDIFNEARKYQPSIIFIDEIDSIAPNRANDDSG 360

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
            +E   +  ++              +  +IAAT R   + + L+   RF   + +   ++
Sbjct: 361 EVESRVVATLLTL----MDGMGAAGKVVVIAATNRPNSVDHALRRPGRFDQEVEIGIPDV 416

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           +    I+ +             +  I   +  T    G  L  +
Sbjct: 417 DARFDILTKQFSRMSSDRHVLDSEAIKYIASKTHGYVGADLTAL 460


>gi|331270686|ref|YP_004397178.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum
           BKT015925]
 gi|329127236|gb|AEB77181.1| DNA polymerase III, subunits gamma and tau [Clostridium botulinum
           BKT015925]
          Length = 541

 Score = 66.3 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 53/267 (19%), Positives = 92/267 (34%), Gaps = 33/267 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPRT EE  GQ      LK      + +   + H  LF G  G GKT+ A++ ++ +   
Sbjct: 11  RPRTFEEVVGQEHITLTLK-----NQMKNNRIAHAYLFCGTRGTGKTSTAKIFSKAVNCL 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDL 136
                 P      D+   +      DV  +D     ++  +  ++EE+ YP  E      
Sbjct: 66  NPQDGEPCNEC--DMCKKINAGLAIDVSEMDAASHNKVDDIRDLIEEVKYPPREGKYKVY 123

Query: 137 MVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ++ E             ++++        I ATT    L   +  R            + 
Sbjct: 124 IMDEAHMLTQGAVNAFLKTLEEPPENVVFILATTDPQKLPITILSRCQRFDFKRIKSDDI 183

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           L+ +++   K  G+   +++   IA  S G  R A  +L    D A       +  E   
Sbjct: 184 LQRLIK-ITKEQGIFADNKSLSLIARMSDGAMRDALSIL----DQAISMGNGKVDYEQVI 238

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARN 274
             L  +  D +      L+    I   
Sbjct: 239 NMLGLVTNDNL------LKLTNAIIDK 259


>gi|323508283|emb|CBQ68154.1| probable RFC4-DNA replication factor C, 37 kDa subunit [Sporisorium
           reilianum]
          Length = 341

 Score = 66.3 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 78/227 (34%), Gaps = 38/227 (16%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   +   RP  L +  G  +    LKV             H+L  G PG+GKTT    +
Sbjct: 19  ELPWVEKYRPMRLNDVVGNKDTIDRLKVI-----QNDGNCPHLLISGLPGIGKTTSVLCL 73

Query: 75  AR------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIHRLSII 120
           AR            EL  +       V  K    A    +L      ++ +DE   ++  
Sbjct: 74  ARALLGDAYKEGVLELNASDERGVDVVRNKIKTFAQKKVSLPPGRHKIIILDEADSMTPA 133

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            ++ L   ME +                 N +RF    A  +   +  P+Q R  I    
Sbjct: 134 AQQALRRTMEIYS----------------NTTRF--CFACNQSNKIIEPIQSRCAILRYG 175

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
              + + LK +++   ++  +  +DE    I   + G  R A   L+
Sbjct: 176 KVRDEQILKRLLE-ICEMEAVEYSDEGLAAIIFTTEGDMRQAINNLQ 221


>gi|301156533|emb|CBW16004.1| DNA polymerase III/DNA elongation factor III, tau and gamma
           subunits [Haemophilus parainfluenzae T3T1]
          Length = 714

 Score = 66.3 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 48/265 (18%), Positives = 83/265 (31%), Gaps = 57/265 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV-- 80
           RP+   E  GQ    + L    E            LF G  G+GKT++A++ A+ L    
Sbjct: 11  RPKNFSEVVGQSHVLTAL----ENGLKENRLHHAYLFSGTRGVGKTSIARLFAKGLNCVN 66

Query: 81  ----------------------NFRSTSGPVIAKAGDLAALLTNLEDRDVL------FID 112
                                 +          K  D   LL N++ + V+       ID
Sbjct: 67  GITADPCGECENCKAIEAGNFIDLIEIDAASRTKVEDTRELLDNVQYKPVVGRYKVYLID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS      L   +E+                         + ATT    L   +  
Sbjct: 127 EVHMLSRHSFNALLKTLEE------------------PPEYVKFLLATTDPQKLPITILS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R  +   L   +   +   + R      +     A  ++A  ++G+ R +  L     D 
Sbjct: 169 RC-MQFHLKALDEPQISAHLNRVLTDENIPFDAPALDKLAKAAQGSIRDSLSL----TDQ 223

Query: 233 AEVAHAKTITREIADAALLRLAIDK 257
           A       ++ ++ +  L  L  D+
Sbjct: 224 AIAMGNGKVSTDVVNTMLGLLDEDQ 248


>gi|228918973|ref|ZP_04082354.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228840688|gb|EEM85948.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 562

 Score = 66.3 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 69/209 (33%), Gaps = 42/209 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+  E+  GQ      L+  +       E + H  LF GP G GKTT+A+V A+ +   
Sbjct: 11  RPQKFEDVVGQKHVTKTLQNAL-----LQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCE 65

Query: 82  F------------------------RSTSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                                ++  +   ++      +  V  I
Sbjct: 66  HAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKVYII 125

Query: 112 DEIHRLSIIVEEILYPAMED--FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+H LS+     L   +E+    +  ++      +     +SR              N 
Sbjct: 126 DEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKIS---VND 182

Query: 170 LQDRFGIPIRLNFYEIEDLK-TIVQRGAK 197
           + +R    +     ++ED    IV R A+
Sbjct: 183 IVERLSTVVTNEGTQVEDEALQIVARAAE 211


>gi|167748328|ref|ZP_02420455.1| hypothetical protein ANACAC_03072 [Anaerostipes caccae DSM 14662]
 gi|167652320|gb|EDR96449.1| hypothetical protein ANACAC_03072 [Anaerostipes caccae DSM 14662]
          Length = 529

 Score = 66.3 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 79/230 (34%), Gaps = 21/230 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP   +E  GQ    + LK  +EA +         LF G  G GKT++A+++A+
Sbjct: 2   ALYRKFRPSAFDEVKGQDHIVTTLKNQLEAGRIGHAY----LFCGTRGTGKTSVAKLLAK 57

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +         P      +    +      +V+ ID      +  +  I E++ Y     
Sbjct: 58  AVNCEHPEDGNP--CGVCESCREIQEGSSMNVMEIDAASNNGVDNIRDIKEQVQYSPASG 115

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT V  +   +  R       + 
Sbjct: 116 KYKVFIIDEVHMLSMGAFNALLKTLEEPPEYVIFILATTEVHKIPITILSRCQ-RYDFHR 174

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
              + +   +        +   ++A   +A  + G+ R A  LL +   F
Sbjct: 175 ITADVIADRLMELMSEEHVEAEEKALRYVARMADGSMRDALSLLDQCIAF 224


>gi|307709201|ref|ZP_07645660.1| DNA polymerase III, subunits gamma and tau [Streptococcus mitis
           SK564]
 gi|307620147|gb|EFN99264.1| DNA polymerase III, subunits gamma and tau [Streptococcus mitis
           SK564]
          Length = 551

 Score = 66.3 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 53/296 (17%), Positives = 89/296 (30%), Gaps = 58/296 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     R +   +  GQ      LK  +E      E + H  LF GP G GKT++A++ A
Sbjct: 4   ALYRKYRSQNFSQLVGQEVVAKTLKQAVE-----QEKISHAYLFSGPRGTGKTSVAKIFA 58

Query: 76  RELGVNFRS------------------------TSGPVIAKAGDLAALLTN------LED 105
           + +    +                                   ++  +         L  
Sbjct: 59  KAMNCPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLAR 118

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
             V  IDE+H LS      L   +E+                         I ATT +  
Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPT------------------QNVVFILATTELHK 160

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           +   +  R       +    + +K  +    +   ++   EA   IA R+ G  R A  +
Sbjct: 161 IPATILSRVQRFEFKSIKTQD-IKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSI 219

Query: 226 LRRVRDFAEVAHAKTITREIADAALLRLAIDKM--GFDQLDL-RYLTMIARNFGGG 278
           L +     +     T   E     +   A+D       Q D+ + L  +   F  G
Sbjct: 220 LDQALSLTQGNELTTAISEEITGTISLSALDDYVAALSQQDVPKALACLNLLFENG 275


>gi|15807400|ref|NP_296131.1| DNA polymerase III, tau/gamma subunit [Deinococcus radiodurans R1]
 gi|6460225|gb|AAF11953.1|AE002071_7 DNA polymerase III, tau/gamma subunit [Deinococcus radiodurans R1]
          Length = 615

 Score = 66.3 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 80/246 (32%), Gaps = 35/246 (14%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP   E+  GQ      L+  +E  +         LF GP G+GKTT A+++A       
Sbjct: 9   RPIRWEDVVGQEHVKDVLRTALEQGRIGHAY----LFSGPRGVGKTTTARLIAMTANC-- 62

Query: 83  RSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSII-----VEEILYPAMEDFQLD 135
              +GP     G+  + L        DV+ ID     S+       E++   AM   +  
Sbjct: 63  ---TGPAPKPCGECESCLAVRAGSHPDVMEIDAASNNSVDDVRDLREKVGLAAMRGGKKI 119

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             ++++        I ATT    +   +  R            E
Sbjct: 120 YILDEAHMMSRAAFNALLKTLEEPPEHVIFILATTEPEKIIPTILSRCQHYRFRRLTSEE 179

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE--VAHAKTITRE 244
                    A      VT E A           R+A   +R      E  +A    +TR 
Sbjct: 180 --------IAGKLAGLVTLEGASADPDALNLIGRLADGAMRDGESLLERMLAAGTAVTRP 231

Query: 245 IADAAL 250
             + AL
Sbjct: 232 AVEEAL 237


>gi|255021192|ref|ZP_05293242.1| DNA polymerase III, subunits gamma and tau [Acidithiobacillus
           caldus ATCC 51756]
 gi|254969307|gb|EET26819.1| DNA polymerase III, subunits gamma and tau [Acidithiobacillus
           caldus ATCC 51756]
          Length = 572

 Score = 66.3 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 96/250 (38%), Gaps = 29/250 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP+  E+F GQ    + L+  +++ +         LF G  G+GKTTLA+++A+
Sbjct: 19  ALARRWRPQRFEDFVGQEAVVAALRHGLDSGRVHHA----FLFTGTRGVGKTTLARLLAK 74

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILY------PA 128
            L        G      G+ +A  +       D+L +D   R  +     L       P 
Sbjct: 75  SLNCE----EGVSSRPCGECSACRSIANGNFVDLLEVDAASRTRVDETRELLDNVQYAPT 130

Query: 129 MEDFQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +  +++ L+               ++++        + ATT    L   +  R  + ++L
Sbjct: 131 VGRYKVYLIDEVHMLSSHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC-LQLQL 189

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
              E   ++  ++      G+A  D A   ++  + G+ R A  LL    D A V  A T
Sbjct: 190 RRLEPARIRERLRTIVDAEGIAAEDTALELLSHAADGSLRDALSLL----DQAIVHGAGT 245

Query: 241 ITREIADAAL 250
           +  +     L
Sbjct: 246 VAAQAVRDML 255


>gi|241667459|ref|ZP_04755037.1| DNA-directed DNA polymerase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876006|ref|ZP_05248716.1| DNA-directed DNA polymerase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254842027|gb|EET20441.1| DNA-directed DNA polymerase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 389

 Score = 66.3 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 79/249 (31%), Gaps = 57/249 (22%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP++  E  GQ  A ++L   +E  K         LF G  G+GKTTL +++A+
Sbjct: 5   ALARKYRPQSFSEVAGQQHALNSLVHALETQKVHHAY----LFTGTRGVGKTTLGRLLAK 60

Query: 77  ELGVNF------------------------RSTSGPVIAKAGDLAALLTNLE------DR 106
            L                                        +   +L N++        
Sbjct: 61  CLNCKTGVTAEPCNKCENCLAINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRY 120

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164
            V  IDE+H LS      L   +E+    +  ++      +     LSR   +       
Sbjct: 121 KVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQ 180

Query: 165 LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGR 224
                              +I+D   +V        +   +++   IA  ++G+ R A  
Sbjct: 181 S------------------DIKDQLKVV---LNKENINSDEQSLDYIAYHAKGSLRDALS 219

Query: 225 LLRRVRDFA 233
           LL +   F 
Sbjct: 220 LLDQAISFC 228


>gi|228937325|ref|ZP_04099973.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228970211|ref|ZP_04130872.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228976781|ref|ZP_04137195.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis Bt407]
 gi|228782943|gb|EEM31107.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis Bt407]
 gi|228789512|gb|EEM37430.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228822350|gb|EEM68330.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|326937815|gb|AEA13711.1| DNA polymerase III subunits gamma and tau [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 562

 Score = 66.3 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 69/209 (33%), Gaps = 42/209 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+  E+  GQ      L+  +       E + H  LF GP G GKTT+A+V A+ +   
Sbjct: 11  RPQKFEDVVGQKHVTKTLQNAL-----LQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCE 65

Query: 82  F------------------------RSTSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                                ++  +   ++      +  V  I
Sbjct: 66  HAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKVYII 125

Query: 112 DEIHRLSIIVEEILYPAMED--FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+H LS+     L   +E+    +  ++      +     +SR              N 
Sbjct: 126 DEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKIS---VND 182

Query: 170 LQDRFGIPIRLNFYEIEDLK-TIVQRGAK 197
           + +R    +     ++ED    IV R A+
Sbjct: 183 IVERLSTVVTNEGTQVEDEALQIVARAAE 211


>gi|229142828|ref|ZP_04271272.1| DNA polymerase III subunit gamma/tau [Bacillus cereus BDRD-ST24]
 gi|228640642|gb|EEK97028.1| DNA polymerase III subunit gamma/tau [Bacillus cereus BDRD-ST24]
          Length = 562

 Score = 66.3 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 68/209 (32%), Gaps = 42/209 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+  E+  GQ      L+  +       E + H  LF GP G GKTT+A+V A+ +   
Sbjct: 11  RPQKFEDVVGQKHVTKTLQNAL-----LQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCE 65

Query: 82  F------------------------RSTSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                                ++  +   ++      +  V  I
Sbjct: 66  HAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKVYII 125

Query: 112 DEIHRLSIIVEEILYPAMED--FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+H LS+     L   +E+    +  ++      +     +SR              N 
Sbjct: 126 DEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKIS---VND 182

Query: 170 LQDRFGIPIRLNFYEIEDLK-TIVQRGAK 197
           + +R    +     ++E     IV R A+
Sbjct: 183 IVERLSTVVTNEGTQVEGEALQIVARAAE 211


>gi|163740347|ref|ZP_02147741.1| DNA polymerase III subunits gamma and tau [Phaeobacter
           gallaeciensis 2.10]
 gi|161386205|gb|EDQ10580.1| DNA polymerase III subunits gamma and tau [Phaeobacter
           gallaeciensis 2.10]
          Length = 611

 Score = 66.3 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 60/310 (19%), Positives = 106/310 (34%), Gaps = 31/310 (10%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
            +   Q        RP T  +  GQ      LK    A +         +  G  G GKT
Sbjct: 14  DQGSGQYQVLARKYRPETFADLVGQDAMVRTLKNAFAADRIAQA----FIMTGIRGTGKT 69

Query: 69  TLAQVVARELGVNFRSTS-GPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSI-----I 120
           T A+++A+ +         GP     G        +E R  DV+ +D   R  +     I
Sbjct: 70  TTARIIAKGMNCIGEDGQGGPTTEPCGKCEHCTAIMEGRHVDVMEMDAASRTGVGDIREI 129

Query: 121 VEEILYPAMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           ++ + Y A        ++ E             ++++   +    I ATT +  +   + 
Sbjct: 130 IDSVQYRAASARYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVL 189

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R      L   E E +  ++Q+ A      + ++A   I   + G+ R A  LL    D
Sbjct: 190 SRCQ-RFDLRRIEPEVMIALLQKIAGAENAQIAEDALALITRAAEGSARDATSLL----D 244

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
            A    A   T +   A L      ++  D +D     ++  +       +    A  ++
Sbjct: 245 QAISHGAGETTADQVRAMLGLADRGRV-LDLID----MILRGDAASALTELSAQYAEGAD 299

Query: 292 PRDAIEDLIE 301
           P   + DL E
Sbjct: 300 PLAVLRDLAE 309


>gi|57529590|ref|NP_001006550.1| replication factor C subunit 4 [Gallus gallus]
 gi|53136906|emb|CAG32782.1| hypothetical protein RCJMB04_37a17 [Gallus gallus]
          Length = 359

 Score = 66.3 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 51/248 (20%), Positives = 84/248 (33%), Gaps = 34/248 (13%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           N  +    +   RP+ ++E   Q E  + LK  +E A      L ++LF GPPG GKT+ 
Sbjct: 31  NKLKPVPWVEKYRPKNVDEVAFQDEVVAVLKKSLEGAD-----LPNLLFYGPPGTGKTST 85

Query: 71  AQVVARELG------------VNFRSTSGPVIAKAGDLAALLTNLEDR---------DVL 109
               AREL                      VI +     A LT    R          ++
Sbjct: 86  ILAAARELFGPELFRQRVLELNASDERGIQVIREKVKAFAQLTASGSRADGKVCPPFKIV 145

Query: 110 FIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
            +DE   ++   +  L   ME         +      +   +SR      +        P
Sbjct: 146 ILDEADSMTSAAQGALRRTMEKES------KTTRFCLICNYISRIIEPLTSRCSKFRFKP 199

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           L D+      L+  E E++K  +   A    + V+D    +     +   R+ G      
Sbjct: 200 LSDKIQQQRLLDVSEKENVK--ITSEAVSYLVKVSDGDLRKAITYLQSATRLMGGKEITE 257

Query: 230 RDFAEVAH 237
           +   E+A 
Sbjct: 258 KTVTEIAG 265


>gi|85057467|ref|YP_456383.1| ATP-dependent Zn protease [Aster yellows witches'-broom phytoplasma
           AYWB]
 gi|84789572|gb|ABC65304.1| ATP-dependent Zn protease [Aster yellows witches'-broom phytoplasma
           AYWB]
          Length = 702

 Score = 66.3 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 47/255 (18%), Positives = 98/255 (38%), Gaps = 25/255 (9%)

Query: 24  PRT----LEEFTGQVEACSNLKVFIEAAKARAEALDHV--------LFVGPPGLGKTTLA 71
           P+       +  G  +    L+  IE  +     + +         L  GPPG GK+ L 
Sbjct: 262 PKNQKIMFSDIYGMKQEKEELEDLIEYFQDNGSDMVNFDKLIPRGYLLYGPPGTGKSFLI 321

Query: 72  QVVARELGVNF------RSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEE 123
           + +  ELG+++      R     V     +L  +    E  ++ ++FIDEI  L+   + 
Sbjct: 322 KALCNELGIHYIELEPSRFDKTYVGEGNEELEKIWQEAESHEKTIIFIDEISGLANREDN 381

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
                  +   +L+       RS K    +  L+ AT  +  + + L+ RF   I+++  
Sbjct: 382 QSNKTSINIVNNLLTKLDGFKRSDK----KIVLMGATNHLDKIDSALRSRFSKEIKIDLL 437

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEA-ACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           + ++++  ++       ++        EIA + +G       L  ++ D A +   K   
Sbjct: 438 KDDEIEGFLKFLVGDYQISYHTYLYLKEIANKCKGKNYSTRNLKEKIIDSAYIKAKKHKR 497

Query: 243 REIADAALLRLAIDK 257
           +      +L   +D+
Sbjct: 498 KNPNHEVMLPSDLDE 512


>gi|324324012|gb|ADY19272.1| DNA polymerase III subunits gamma and tau [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 562

 Score = 66.3 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 69/209 (33%), Gaps = 42/209 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+  E+  GQ      L+  +       E + H  LF GP G GKTT+A+V A+ +   
Sbjct: 11  RPQKFEDVVGQKHVTKTLQNAL-----LQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCE 65

Query: 82  F------------------------RSTSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                                ++  +   ++      +  V  I
Sbjct: 66  HAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKVYII 125

Query: 112 DEIHRLSIIVEEILYPAMED--FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+H LS+     L   +E+    +  ++      +     +SR              N 
Sbjct: 126 DEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKIS---VND 182

Query: 170 LQDRFGIPIRLNFYEIEDLK-TIVQRGAK 197
           + +R    +     ++ED    IV R A+
Sbjct: 183 IVERLSTVVNNEGTQVEDEALQIVARAAE 211


>gi|238759223|ref|ZP_04620390.1| DNA polymerase III subunit gamma [Yersinia aldovae ATCC 35236]
 gi|238702510|gb|EEP95060.1| DNA polymerase III subunit gamma [Yersinia aldovae ATCC 35236]
          Length = 655

 Score = 66.3 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 87/244 (35%), Gaps = 29/244 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        L  G  G+GKTT+A+++A+ L    
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLLSGTRGVGKTTIARLLAKGLNCET 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILY------PAMEDFQL 134
             T+ P     G  A      + R  D++ ID   R  +     L       PA   F++
Sbjct: 67  GITAAP----CGVCANCREIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKV 122

Query: 135 DLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            L+               ++++   +    + ATT    L   +  R  +   L   ++E
Sbjct: 123 YLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRC-LQFHLKAIDVE 181

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
            ++ ++++  +   +     A   +A  + G+ R A  L     D A       IT    
Sbjct: 182 QIRALLEKILQAEQITSDARALQLLARAADGSMRDALSL----ADQAIAMGQGQITTSTV 237

Query: 247 DAAL 250
              L
Sbjct: 238 SQML 241


>gi|254368386|ref|ZP_04984403.1| DNA polymerase III [Francisella tularensis subsp. holarctica
           FSC022]
 gi|157121280|gb|EDO65481.1| DNA polymerase III [Francisella tularensis subsp. holarctica
           FSC022]
          Length = 546

 Score = 66.3 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 79/249 (31%), Gaps = 57/249 (22%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP++  E  GQ  A ++L   +E  K         LF G  G+GKTTL +++A+
Sbjct: 5   ALARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAY----LFTGTRGVGKTTLGRLLAK 60

Query: 77  ELGVNF------------------------RSTSGPVIAKAGDLAALLTNLE------DR 106
            L                                        +   +L N++        
Sbjct: 61  CLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRY 120

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164
            V  IDE+H LS      L   +E+    +  ++      +     LSR   +       
Sbjct: 121 KVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQ 180

Query: 165 LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGR 224
                              +I+D   I+        +   +++   IA  ++G+ R A  
Sbjct: 181 T------------------DIKDQLKII---LAKENINSDEQSLEYIAYHAKGSLRDALS 219

Query: 225 LLRRVRDFA 233
           LL +   F 
Sbjct: 220 LLDQAISFC 228


>gi|42779101|ref|NP_976348.1| DNA polymerase III subunits gamma and tau [Bacillus cereus ATCC
           10987]
 gi|229194413|ref|ZP_04321218.1| DNA polymerase III subunit gamma/tau [Bacillus cereus m1293]
 gi|42735016|gb|AAS38956.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus ATCC
           10987]
 gi|228589069|gb|EEK47082.1| DNA polymerase III subunit gamma/tau [Bacillus cereus m1293]
          Length = 562

 Score = 66.3 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 69/209 (33%), Gaps = 42/209 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+  E+  GQ      L+  +       E + H  LF GP G GKTT+A+V A+ +   
Sbjct: 11  RPQKFEDVVGQKHVTKTLQNAL-----LQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCE 65

Query: 82  F------------------------RSTSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                                ++  +   ++      +  V  I
Sbjct: 66  HAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKVYII 125

Query: 112 DEIHRLSIIVEEILYPAMED--FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+H LS+     L   +E+    +  ++      +     +SR              N 
Sbjct: 126 DEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKIS---VND 182

Query: 170 LQDRFGIPIRLNFYEIEDLK-TIVQRGAK 197
           + +R    +     ++ED    IV R A+
Sbjct: 183 IVERLSTVVNNEGTQVEDEALQIVARAAE 211


>gi|297625597|ref|YP_003687360.1| hypothetical protein PFREUD_03820 [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
 gi|296921362|emb|CBL55915.1| Hypothetical protein PFREUD_03820 [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
          Length = 1134

 Score = 66.3 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 44/247 (17%), Positives = 76/247 (30%), Gaps = 27/247 (10%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
             +     A     RP T E+  GQ      L+  I   +         LF GP G GKT
Sbjct: 83  DNDPGAPLALYRRYRPDTFEQVIGQDHVTLPLQRAIANNRVSHAY----LFSGPRGCGKT 138

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR----DVLFIDEIHR-----LSI 119
           T A+++AR L       +GP     G   +            DV+ ID            
Sbjct: 139 TCARILARCLNCE----NGPTPTPCGHCTSCRELATGGPGSIDVIEIDAASHGRVDDARE 194

Query: 120 IVEEILYPAMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           + E I +  ++      ++ E             + V+        I ATT    +   +
Sbjct: 195 LREGIFFAPVQSRFKIYIIDEAHMVTKEGFNALLKVVEEPPPHVKFIFATTEPDKVIGTI 254

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
           + R            + L   +++      + V       +     G+ R +  +L ++ 
Sbjct: 255 RSR-THHYPFRLVPPKVLTDYLEKICVEEHVQVEPGVLPLVVRAGAGSVRDSLSVLDQLL 313

Query: 231 DFAEVAH 237
             A    
Sbjct: 314 GSAGADG 320


>gi|167538762|ref|XP_001751040.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163770449|gb|EDQ84145.1| predicted protein [Monosiga brevicollis MX1]
          Length = 331

 Score = 66.3 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 41/212 (19%), Positives = 78/212 (36%), Gaps = 35/212 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP +L++     E  + ++ FI       + L H+L  GPPG GKT+  +  A+
Sbjct: 23  PWVEKYRPSSLDQLISHTEIINTIQRFI-----NEDRLPHLLLYGPPGTGKTSTIKACAK 77

Query: 77  E-LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           +  G  ++           ++  + +  +   ++ +DE   +S   +  L   +E +   
Sbjct: 78  QLYGKGYKRM-------VLEVRLVTSGFK---LVILDEADAMSNEAQAALRRVIEQYT-- 125

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
                                      V  ++  +Q R     R      ++LK+ VQR 
Sbjct: 126 ----------------KHTRFCLICNYVSKISPAVQSRC-TRFRFAPLSEDELKSQVQRV 168

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
            K   L VT E    +   + G  R A  +L+
Sbjct: 169 IKAENLTVTPEGIDALTRLADGDMRKALNILQ 200


>gi|254302055|ref|ZP_04969413.1| DNA-directed DNA polymerase III gamma and tau subunit
           [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
 gi|148322247|gb|EDK87497.1| DNA-directed DNA polymerase III gamma and tau subunit
           [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
          Length = 484

 Score = 66.3 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 101/242 (41%), Gaps = 22/242 (9%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVAREL 78
              RP +  E +G+ E   +LK+ ++      +++ H  LF GP G+GKTT+A+++A+ +
Sbjct: 7   RKYRPSSFSEVSGENEIVKSLKLSLK-----NKSMAHAYLFSGPRGVGKTTIARLIAKGV 61

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQ 133
                  +G    +  +  A+       D++ ID      I  +  + E+I Y  +E  +
Sbjct: 62  NCLNLKENGEPCNECKNCKAINEG-RFSDLIEIDAASNRSIDEIRSLKEKINYQPVEGLK 120

Query: 134 LDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
              ++ E             ++++   +    I ATT +  +   +  R          +
Sbjct: 121 KVYIIDEAHMLTKEAFNALLKTLEEPPAHVMFILATTELEKILPTIISRCQ-RYDFKPLD 179

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +E++K+ ++   K   L++TD+    I   S G+ R +  +L R+   A          E
Sbjct: 180 LEEMKSGLEHILKEENLSMTDDVYPVIYENSSGSMRDSISILERLIVTANGKEIDLKIAE 239

Query: 245 IA 246
             
Sbjct: 240 DT 241


>gi|329114766|ref|ZP_08243523.1| DNA polymerase III subunit Tau [Acetobacter pomorum DM001]
 gi|326695897|gb|EGE47581.1| DNA polymerase III subunit Tau [Acetobacter pomorum DM001]
          Length = 712

 Score = 66.3 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 54/269 (20%), Positives = 91/269 (33%), Gaps = 28/269 (10%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
            +  S         RP T ++  GQ      L+     A A        +  G  G+GKT
Sbjct: 91  DQTASPYRVLARKYRPTTFDDLIGQEAMVRTLR----NAFALGRVAHAFMLTGVRGVGKT 146

Query: 69  TLAQVVARELGV-NFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSI------ 119
           T A+++AR L         GP     G  A  +  L DR  DVL +D   R  +      
Sbjct: 147 TTARIIARALNCIGPDGKGGPTADPCGVCANCVAILNDRHPDVLEMDAASRTGVDDVREI 206

Query: 120 IVEEILYPAMEDFQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           I      P     ++ ++               ++++   ++ T I ATT +  +   + 
Sbjct: 207 IDATRFRPMQGRMKVFIIDEVHMLSRNAFNALLKTLEEPPAQVTFIFATTELRKVPVTVL 266

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R          + E L  +  R A    + ++ +A   +A  + G+ R    LL    D
Sbjct: 267 SRCQRFDLRRVPQSE-LVGLFSRIADKEHVRLSPDALALVARAADGSVRDGLSLL----D 321

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGF 260
            A          +    A   +  D +G 
Sbjct: 322 QAIAQGTGQTDADGVIGAT--VISDMLGL 348


>gi|238061528|ref|ZP_04606237.1| DNA polymerase III, gamma subunit [Micromonospora sp. ATCC 39149]
 gi|237883339|gb|EEP72167.1| DNA polymerase III, gamma subunit [Micromonospora sp. ATCC 39149]
          Length = 428

 Score = 66.3 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 50/265 (18%), Positives = 87/265 (32%), Gaps = 32/265 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RPRT  E  GQ      L   + + +         LF GP G GKT+ A+++AR
Sbjct: 25  ALYRKYRPRTFAEIIGQEHVTEPLSQALRSGRLNHAY----LFSGPRGCGKTSSARILAR 80

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR----DVLFID-----EIHRLSIIVEEILYP 127
            L        GP     G   +  +   D     DV+ ID      +     + E+  + 
Sbjct: 81  SLNCE----QGPTPEPCGQCDSCRSLAIDGSGSIDVIEIDAASHGGVDDARELREKAFFA 136

Query: 128 AMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
                    ++ E             + V+        I ATT    +   ++ R     
Sbjct: 137 PARSRFKIYVIDEAHMVSSAGFNALLKLVEEPPEYVKFIFATTEPEKVLGTIKSR-THHY 195

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
                  + L+  +++  +  G+ V       +     G+ R +  +L ++     +A A
Sbjct: 196 PFRLIPPKTLRPYLEQLCEAEGVTVDPAVFPLVVRAGGGSARDSLSVLDQL-----IAGA 250

Query: 239 KTITREIADAALLRLAIDKMGFDQL 263
                    AA L    D    D++
Sbjct: 251 GPEGVSYPRAAALLGVTDSALIDEM 275


>gi|324998990|ref|ZP_08120102.1| DNA polymerase III subunits gamma and tau [Pseudonocardia sp. P1]
          Length = 385

 Score = 66.3 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 41/239 (17%), Positives = 77/239 (32%), Gaps = 27/239 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP  L +  GQ      L   + A +         LF GP G GKT+ A+++AR
Sbjct: 4   ALYRKYRPAKLADVVGQEHVTEPLATALSAGRVNHAY----LFSGPRGCGKTSSARILAR 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR----DVLFID-----EIHRLSIIVEEILYP 127
            L        GP     G+  + ++   +     DV+ +D      +     + +   Y 
Sbjct: 60  SLNC----VQGPTPDPCGECGSCVSLAPEGPGNIDVIELDAASHGGVEDARELRDRAFYA 115

Query: 128 AMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
             E      +V E             + V+        + ATT    +   ++ R     
Sbjct: 116 PAESRYRVFVVDEAHMVTTQGFNALLKIVEEPPEHLVFVFATTEPDKVLPTIRSR-THHY 174

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                    ++++++R      + V       +     G+ R    +L ++   A    
Sbjct: 175 PFRLIPPGTMRSLLERICGDEEVTVAPPVFPLVIRAGGGSARDTLSVLDQLLAGAGDGG 233


>gi|325201859|gb|ADY97313.1| DNA polymerase III, subunits gamma and tau [Neisseria meningitidis
           M01-240149]
          Length = 706

 Score = 66.3 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 49/303 (16%), Positives = 90/303 (29%), Gaps = 63/303 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T  +  GQ      L+  ++  +     L H  L  G  G+GKTT+A+++A+ L   
Sbjct: 11  RPKTFSDLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCE 65

Query: 82  FRS------------------------TSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                                ++  +L N +         V  I
Sbjct: 66  NAQHGEPCGVCESCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYII 125

Query: 112 DEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+H LS      +   +E+    +  ++      +     LSR                
Sbjct: 126 DEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNM------- 178

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
                           + +   +        +A    A   +   + G+ R A  LL + 
Sbjct: 179 --------------TAQQVADHLAHVLDSEKIAYAPPALQLLGRAAAGSMRDALSLLDQA 224

Query: 230 RDFAEVAHAKTITREIADAALLRLAIDKM-GFDQLDLRYLTMIARNFGGGPVGIETISAG 288
                 + A+   R++  A   +   + + G    D   L   A+      VG +     
Sbjct: 225 IAMGSGSVAEQDVRQMIGAVDKQYLYELLTGIVNQDGEALLAKAQEMAACAVGFDN---A 281

Query: 289 LSE 291
           L E
Sbjct: 282 LGE 284


>gi|317478676|ref|ZP_07937831.1| DNA polymerase III [Bacteroides sp. 4_1_36]
 gi|316905187|gb|EFV26986.1| DNA polymerase III [Bacteroides sp. 4_1_36]
          Length = 604

 Score = 66.3 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 51/245 (20%), Positives = 73/245 (29%), Gaps = 54/245 (22%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T E   GQ    + LK  I   K         LF GP G+GKTT A++ A+ +
Sbjct: 8   ARKYRPSTFESVVGQRALTTTLKNAIATGKLAHAY----LFCGPRGVGKTTCARIFAKTI 63

Query: 79  GV-------------------------NFRSTSGPVIAKAGDLAALLT------NLEDRD 107
                                      N             D+  L+        +    
Sbjct: 64  NCMSPTADGEACNQCESCTSFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYK 123

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           V  IDE+H LS          +E+                         I ATT    + 
Sbjct: 124 VYIIDEVHMLSASAFNAFLKTLEE------------------PPRHAIFILATTEKHKIL 165

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             +  R  I        +ED    +   A   G+    EA   IA+++ G  R A  +  
Sbjct: 166 PTILSRCQIYDFSRI-GVEDTVAHLAYVASKEGITAEPEALNVIALKADGGMRDALSIFD 224

Query: 228 RVRDF 232
           +V  F
Sbjct: 225 QVVSF 229


>gi|304395534|ref|ZP_07377417.1| DNA polymerase III, subunits gamma and tau [Pantoea sp. aB]
 gi|304356828|gb|EFM21192.1| DNA polymerase III, subunits gamma and tau [Pantoea sp. aB]
          Length = 692

 Score = 66.3 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 55/306 (17%), Positives = 104/306 (33%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+   +  GQ    + L        +        LF G  G+GKTT+A+++A+  G+N 
Sbjct: 11  RPQAFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTTIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGQCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++   S    + ATT    L   +  R  +   L   +++ +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPSHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVDQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++   K   +     A   +A  + G+ R A  L     D A       +T      
Sbjct: 184 RQQLEHVLKQEQIESETRALQLLARAADGSMRDALSL----TDQAIAMGQGAVTSNTVSV 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L       D+  L  L  +    G   + + + +A      +A+   +   + Q  
Sbjct: 240 MLGTLD------DEQPLGLLEALVDGDGQQVMTLLSQAASRGVEWEALLVEMLRLLHQIA 293

Query: 309 FIQRTP 314
            +Q  P
Sbjct: 294 MVQLLP 299


>gi|229159197|ref|ZP_04287223.1| DNA polymerase III subunit gamma/tau [Bacillus cereus R309803]
 gi|228624278|gb|EEK81078.1| DNA polymerase III subunit gamma/tau [Bacillus cereus R309803]
          Length = 562

 Score = 66.3 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 69/209 (33%), Gaps = 42/209 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+  E+  GQ      L+  +       E + H  LF GP G GKTT+A+V A+ +   
Sbjct: 11  RPQKFEDVVGQKHVTKTLQNAL-----LQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCE 65

Query: 82  F------------------------RSTSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                                ++  +   ++      +  V  I
Sbjct: 66  HAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKVYII 125

Query: 112 DEIHRLSIIVEEILYPAMED--FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+H LS+     L   +E+    +  ++      +     +SR              N 
Sbjct: 126 DEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKIS---VND 182

Query: 170 LQDRFGIPIRLNFYEIEDLK-TIVQRGAK 197
           + +R    +     ++ED    IV R A+
Sbjct: 183 IVERLSTVVTNEGTQVEDEALQIVARAAE 211


>gi|326802965|ref|YP_004320783.1| DNA polymerase III, subunit gamma and tau [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326651277|gb|AEA01460.1| DNA polymerase III, subunit gamma and tau [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 641

 Score = 66.3 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 81/226 (35%), Gaps = 21/226 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+   +  GQ      LK  I   K         LF GP G GKT+ A++ A+ +    
Sbjct: 21  RPQIFADIVGQEAVSRTLKNAINQDKTSHAY----LFNGPRGTGKTSAAKIFAKAINCPN 76

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
           ++   P       L   +T     DV+ ID      +  +  I +++ Y   E      +
Sbjct: 77  QNDGEPCNEC--HLCQAITEGRLADVIEIDAASNNGVEEIRDIRDKVRYAPTEANYKVYI 134

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++   SR   I ATT    +   +  R            + +
Sbjct: 135 IDEVHMLSTGAFNALLKTLEEPPSRVIFILATTEAHKIPATVISRTQ-RFDFKRLSNQAI 193

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
           K  +       G+    EA   IA  + G  R A  LL +V  F++
Sbjct: 194 KDRMAYILGQEGVTYEAEALELIAQDANGGMRDALSLLDQVISFSQ 239


>gi|322701219|gb|EFY92969.1| putative replication factor C [Metarhizium acridum CQMa 102]
          Length = 357

 Score = 66.3 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 80/242 (33%), Gaps = 39/242 (16%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   +   RP  L++  G  E    LK+      AR   + HV+  G PG+GKTT    +
Sbjct: 32  ELPWVEKYRPVFLDDVVGNTETIERLKII-----AREGNMPHVIISGMPGIGKTTSVLCL 86

Query: 75  ARE-----LGVNFRSTSGPVIAKAGDLAALLTNLEDRDV---------LFIDEIHRLSII 120
           AR+             +         +   +     + V         + +DE   ++  
Sbjct: 87  ARQLLGESYREAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRHKLVILDEADSMTSG 146

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            ++ L   ME +                 N +RF    A  +   +  PLQ R  I    
Sbjct: 147 AQQALRRTMEIYS----------------NTTRFAF--ACNQSNKIIEPLQSRCAILRYA 188

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA-GRLLRRVRDFAEVAHAK 239
              + + +K ++Q   +   +  +D+    +   + G  R A   L      F  V+   
Sbjct: 189 KLSDAQVVKRLLQ-IIEAEKVEYSDDGLAALVFSAEGDMRQAINNLQSTFAGFGFVSGDN 247

Query: 240 TI 241
             
Sbjct: 248 VF 249


>gi|320593090|gb|EFX05499.1| aaa ATPase domain containing protein [Grosmannia clavigera kw1407]
          Length = 357

 Score = 66.3 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 80/227 (35%), Gaps = 38/227 (16%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   +   RP  L++  G  E    LK+      A+   + H++  G PG+GKTT    +
Sbjct: 33  ELPWVEKYRPAFLDDIVGNTETIERLKII-----AKDGNMPHIIISGMPGIGKTTSVLCL 87

Query: 75  AR------------ELGVNFRSTSGPVIAKAGDLA--ALLTNLEDRDVLFIDEIHRLSII 120
           AR            EL  +       V  +    A   +        ++ +DE   ++  
Sbjct: 88  ARQLLGDAYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPAGRHKIVILDEADSMTSG 147

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            ++ L   ME +                 N +RF    A  +   +  PLQ R  I    
Sbjct: 148 AQQALRRTMEIYS----------------NTTRFAF--ACNQSNKIIEPLQSRCAILRYA 189

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
              + + +K ++Q   +   +  +D+    +   + G  R A   L+
Sbjct: 190 RLTDAQVVKRLLQ-IIEAEQVRYSDDGLAALVFSAEGDMRQAINNLQ 235


>gi|315605705|ref|ZP_07880738.1| DNA polymerase III subunits gamma and tau [Actinomyces sp. oral
           taxon 180 str. F0310]
 gi|315312660|gb|EFU60744.1| DNA polymerase III subunits gamma and tau [Actinomyces sp. oral
           taxon 180 str. F0310]
          Length = 973

 Score = 66.3 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 60/175 (34%), Gaps = 26/175 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T ++  GQ      LK  + A +         LF GP G GKTT A+++AR
Sbjct: 27  ALYRRYRPDTFDQVIGQEHVTEPLKAALRANRVTHAY----LFSGPRGCGKTTSARILAR 82

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR----DVLFIDEIHRLSIIVEEILY------ 126
            L        GP     G  A+            DV+ ID      +     L       
Sbjct: 83  CLNC----AQGPTDKPCGQCASCRELATGGPGSLDVVEIDAASHGGVDDARDLRERATFA 138

Query: 127 PAMEDFQLDLMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           P  + +++ ++         G     + V+        + ATT    +   ++ R
Sbjct: 139 PVRDRYKIFIIDEAHMVTNQGFNALLKLVEEPPEHVKFVFATTEPERVIGTIRSR 193


>gi|303239743|ref|ZP_07326267.1| DNA polymerase III, subunits gamma and tau [Acetivibrio
           cellulolyticus CD2]
 gi|302592680|gb|EFL62404.1| DNA polymerase III, subunits gamma and tau [Acetivibrio
           cellulolyticus CD2]
          Length = 555

 Score = 66.3 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 80/221 (36%), Gaps = 21/221 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP   E+   Q      LK  I   +         LF G  G GKTT+A++ +R +    
Sbjct: 11  RPMVFEDVVEQEHVVKTLKNSISVGRIAHAY----LFCGTRGTGKTTMAKIFSRAINCEN 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
            +   P      ++   + N    DV+ ID      +  +  I +E++Y   +      +
Sbjct: 67  STNGDPCNEC--EICKGILNGSLLDVIEIDAASNNSVDNVREIRDEVVYAPSKARYKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT    L   +  R           +E +
Sbjct: 125 IDEVHMLSSGAFNALLKTLEEPPGHVVFILATTEPHKLPATILSRCQ-RFDFRRIPVESI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
              ++  AK + +++ +E    IA  S G  R A  +L + 
Sbjct: 184 VKRIEHIAKSSEVSIENEGLKLIARMSDGALRDAISILDQC 224


>gi|208780606|ref|ZP_03247945.1| DNA polymerase III, subunits gamma and tau, putative [Francisella
           novicida FTG]
 gi|208743581|gb|EDZ89886.1| DNA polymerase III, subunits gamma and tau, putative [Francisella
           novicida FTG]
          Length = 546

 Score = 66.3 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 79/249 (31%), Gaps = 57/249 (22%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP++  E  GQ  A ++L   +E  K         LF G  G+GKTTL +++A+
Sbjct: 5   ALARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAY----LFTGTRGVGKTTLGRLLAK 60

Query: 77  ELGVNF------------------------RSTSGPVIAKAGDLAALLTNLE------DR 106
            L                                        +   +L N++        
Sbjct: 61  CLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRY 120

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164
            V  IDE+H LS      L   +E+    +  ++      +     LSR   +       
Sbjct: 121 KVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQ 180

Query: 165 LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGR 224
                              +I+D   I+        +   +++   IA  ++G+ R A  
Sbjct: 181 A------------------DIKDQLKII---LAKENINSDEQSLEYIAYHAKGSLRDALS 219

Query: 225 LLRRVRDFA 233
           LL +   F 
Sbjct: 220 LLDQAISFC 228


>gi|47214930|emb|CAG01152.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 357

 Score = 66.3 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 78/222 (35%), Gaps = 35/222 (15%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           S   ++    +   RP+ ++E   Q E  + LK  +E A      L ++LF GPPG GKT
Sbjct: 26  SEKKAKAVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGAD-----LPNLLFYGPPGTGKT 80

Query: 69  TLAQVVARE------LGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--------- 107
           +     ARE              +        VI +     A LT    R          
Sbjct: 81  STILAAARELYGPVLYRQRVLELNASDERGIQVIREKVKTFAQLTVAGTRPDGKPCPPFK 140

Query: 108 VLFIDEIHRLSIIVEEILYPAM--EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
           ++ +DE   ++   +  L   M  E       +     +R ++   SR +      R   
Sbjct: 141 IIILDEADSMTPPAQAALRRTMEKESRTTRFCLICNYISRIIEPLTSRCSKF----RFKP 196

Query: 166 LTNPLQDRFGIPIRLNF---YEIEDLKTIVQRGAKLTGLAVT 204
           L N +Q+   + I       Y  E +  +V+        A+T
Sbjct: 197 LDNQVQEERLLAICEKENLKYSGESVSALVRVSEGDLRKAIT 238


>gi|157829166|ref|YP_001495408.1| DNA polymerase III subunits gamma and tau [Rickettsia rickettsii
           str. 'Sheila Smith']
 gi|165933895|ref|YP_001650684.1| DNA polymerase III subunits gamma and tau [Rickettsia rickettsii
           str. Iowa]
 gi|157801647|gb|ABV76900.1| DNA polymerase III subunits gamma and tau [Rickettsia rickettsii
           str. 'Sheila Smith']
 gi|165908982|gb|ABY73278.1| DNA polymerase III subunit gamma/tau [Rickettsia rickettsii str.
           Iowa]
          Length = 509

 Score = 66.3 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 87/248 (35%), Gaps = 22/248 (8%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP    E  GQ      L   I   +         L  G  G+GKTT A+++A+ +
Sbjct: 14  ARKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGY----LLTGIRGVGKTTSARIIAKAV 69

Query: 79  GVNFRSTSGPVIAKAGDLAALLT--NLEDRDVLFIDEIHRLS-----IIVEEILYPAMED 131
             +   T    I         ++  N    D++ ID   + S      I+E   Y  ++ 
Sbjct: 70  NCSALITENTTIKTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQG 129

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT V  +   +  R      L  
Sbjct: 130 KHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQ-RYDLRR 188

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
              E++  +++   K   L    EA   IA +S G+ R A  +L +    + V     I+
Sbjct: 189 LSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDAVSILDQAASMS-VKSDNIIS 247

Query: 243 REIADAAL 250
            ++ +  L
Sbjct: 248 PQVINQML 255


>gi|296314215|ref|ZP_06864156.1| DNA polymerase III, subunit gamma and tau [Neisseria polysaccharea
           ATCC 43768]
 gi|296839114|gb|EFH23052.1| DNA polymerase III, subunit gamma and tau [Neisseria polysaccharea
           ATCC 43768]
          Length = 727

 Score = 66.3 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 49/303 (16%), Positives = 91/303 (30%), Gaps = 63/303 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T  +  GQ      L+  ++  +     L H  L  G  G+GKTT+A+++A+ L   
Sbjct: 11  RPKTFADLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCE 65

Query: 82  FRS------------------------TSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                                ++  +L N +         V  I
Sbjct: 66  NAQHGEPCGVCESCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYII 125

Query: 112 DEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+H LS      +   +E+    +  ++      +     LSR                
Sbjct: 126 DEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNM------- 178

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
                           + +   +        +A    A   +   + G+ R A  LL + 
Sbjct: 179 --------------TSQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQA 224

Query: 230 RDFAEVAHAKTITREIADAALLRLAIDKM-GFDQLDLRYLTMIARNFGGGPVGIETISAG 288
                 + A+   R++  A   +   + + G    D   L + A+      VG +     
Sbjct: 225 IAMGSGSVAEQDVRQMIGAVDKQYLYELLTGIVNQDGEALLVKAQEMAACAVGFDN---A 281

Query: 289 LSE 291
           L E
Sbjct: 282 LGE 284


>gi|260913638|ref|ZP_05920114.1| DNA polymerase III subunit gamma/tau [Pasteurella dagmatis ATCC
           43325]
 gi|260632177|gb|EEX50352.1| DNA polymerase III subunit gamma/tau [Pasteurella dagmatis ATCC
           43325]
          Length = 741

 Score = 66.3 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 49/299 (16%), Positives = 93/299 (31%), Gaps = 58/299 (19%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV-- 80
           RP+T  +  GQ        + +             LF G  G+GKT++A++ A+ L    
Sbjct: 11  RPKTFADVVGQSHIL----IALSNGLKENRLHHAYLFSGTRGVGKTSIARLFAKGLNCVN 66

Query: 81  ----------------------NFRSTSGPVIAKAGDLAALLTNLEDRD------VLFID 112
                                 +          K  D   LL N++ +       V  ID
Sbjct: 67  GVTAEPCGECEHCKAIEEGRFIDLIEIDAASRTKVEDTRELLDNVQYKPVQGRYKVYLID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS      L   +E+                         + ATT    L   +  
Sbjct: 127 EVHMLSRHSFNALLKTLEE------------------PPEYVKFLLATTDPQKLPITILS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R  +   L   E   +   ++   K   +     A  ++A  ++G+ R +  L  +    
Sbjct: 169 RC-MQFHLKALEQTQIAQHLEFILKQESIPFDFLALEKLAKAAQGSIRDSLSLADQAIAM 227

Query: 233 AEVAHAKTITREI-----ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETIS 286
           +       +  E+      + A+  L   + G  +  ++ +  IA       + +  I+
Sbjct: 228 SNGNITLNVVNEMLGLLDDNQAIDILYTLQQGNGENMMKIIQAIAEKGSDWDLFLRDIA 286


>gi|258516485|ref|YP_003192707.1| Sigma 54 interacting domain-containing protein [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257780190|gb|ACV64084.1| Sigma 54 interacting domain protein [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 575

 Score = 66.3 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 56/288 (19%), Positives = 91/288 (31%), Gaps = 56/288 (19%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           R VS  +   +  RP   E+  GQ E   +L+     A        HV+  G PG+GKT 
Sbjct: 56  RAVSLTEPLAAKTRPSAFEDIVGQEEGLKSLR-----AALCGPNPQHVIIYGSPGVGKTA 110

Query: 70  LAQVVARELGVNFRSTSG----------------------PVIAKAGD------------ 95
            A++V  +   N  S                         P+I    D            
Sbjct: 111 AARLVLEQAKKNPHSPFKEKARFVEVDATTSRFDERGIADPLIGSVHDPIYQGAGPLGMA 170

Query: 96  -----LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE---------G 141
                    +T      +LFIDEI  L  +    L   MED ++ L             G
Sbjct: 171 GIPQPKQGAVTKAHGG-ILFIDEIGELHPVQMNKLLKVMEDRKVILESAYYSSEDGNIPG 229

Query: 142 PSARSVKINLS-RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
                 +  L   F L+ ATTR      P      + +        +++TI ++  +   
Sbjct: 230 HIHDIFQNGLPADFRLVGATTRSPEDIPPAIRSRCLEVFFRPLLASEIETIAEKAVRKVA 289

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
               ++   E+  +     R A  +++     A     K I +   + 
Sbjct: 290 FK-PEDGVLEVIKKYAANGREAVNIVQLAAGIATTEGYKQIRKSDVEW 336


>gi|227487307|ref|ZP_03917623.1| DNA polymerase III subunits gamma and tau [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227092733|gb|EEI28045.1| DNA polymerase III subunits gamma and tau [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 829

 Score = 66.3 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 78/222 (35%), Gaps = 21/222 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP T  E  GQ      L V +++           LF GP G GKT+ A+++AR L    
Sbjct: 8   RPATFAEVRGQEHVTRPLSVALDSGNIGHAY----LFSGPRGCGKTSSARILARSLNCEH 63

Query: 83  RSTSGPVIAKAGDLAALL-TNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLD 135
             TS P   +     AL      + DV  +D     S+     L       P+   +++ 
Sbjct: 64  GPTSTP-CGECDSCRALAPGGTGNLDVTELDAASHGSVDDMRELRESAVFAPSESRYRIF 122

Query: 136 LMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ++         G     + V+        I ATT    +   ++ R              
Sbjct: 123 IIDEAHMITPQGANALLKIVEEPPEHLVFIFATTEPEKIIGTIRSRVQ-HYPFRLLTPPV 181

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           ++ ++Q      G+ V D     +     G+PR    +L ++
Sbjct: 182 MRGLLQDVCAGEGVEVEDSVFTPVIRAGGGSPRDTLSILDQL 223


>gi|218233931|ref|YP_002364873.1| DNA polymerase III subunits gamma and tau [Bacillus cereus B4264]
 gi|228956463|ref|ZP_04118261.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|229039927|ref|ZP_04189693.1| DNA polymerase III subunit gamma/tau [Bacillus cereus AH676]
 gi|229107708|ref|ZP_04237346.1| DNA polymerase III subunit gamma/tau [Bacillus cereus Rock1-15]
 gi|229148431|ref|ZP_04276689.1| DNA polymerase III subunit gamma/tau [Bacillus cereus m1550]
 gi|218161888|gb|ACK61880.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus B4264]
 gi|228635040|gb|EEK91611.1| DNA polymerase III subunit gamma/tau [Bacillus cereus m1550]
 gi|228675748|gb|EEL30954.1| DNA polymerase III subunit gamma/tau [Bacillus cereus Rock1-15]
 gi|228727417|gb|EEL78608.1| DNA polymerase III subunit gamma/tau [Bacillus cereus AH676]
 gi|228803220|gb|EEM50040.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 562

 Score = 66.3 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 68/209 (32%), Gaps = 42/209 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+  E+  GQ      L+  +       E + H  LF GP G GKTT+A+V A+ +   
Sbjct: 11  RPQKFEDVVGQKHVTKTLQNAL-----LQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCE 65

Query: 82  F------------------------RSTSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                                ++  +   ++      +  V  I
Sbjct: 66  HAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKVYII 125

Query: 112 DEIHRLSIIVEEILYPAMED--FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+H LS+     L   +E+    +  ++      +     +SR              N 
Sbjct: 126 DEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKIS---VND 182

Query: 170 LQDRFGIPIRLNFYEIEDLK-TIVQRGAK 197
           + +R    +     ++E     IV R A+
Sbjct: 183 IVERLSTVVTNEGTQVEGEALQIVARAAE 211


>gi|13242652|ref|NP_077667.1| EsV-1-182 [Ectocarpus siliculosus virus 1]
 gi|13177452|gb|AAK14596.1|AF204951_181 EsV-1-182 [Ectocarpus siliculosus virus 1]
          Length = 326

 Score = 66.3 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 51/236 (21%), Positives = 76/236 (32%), Gaps = 37/236 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RPR + +          LK  +  A+   + L H+LF GPPG GKT+    +AR
Sbjct: 3   PWVEKYRPRRVRDVVHHDH----LKRVLNGAEKTGD-LPHLLFHGPPGTGKTSTILALAR 57

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
            L          +   A D   L       DV+  D+I   S +      P    F+L +
Sbjct: 58  TLLGEGNMRERVLELNASDERGL-------DVV-RDKIKTFSKMSISSFQPGCPPFKLVI 109

Query: 137 MVGEGPSARSVKINLSR--------FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +          +  L R                 V  +  PL  R     R +    + +
Sbjct: 110 LDEADTMTADAQSALRRTMETHSVVTRFCLVCNYVSKIIAPLASRCA-KFRFSTLAPKSM 168

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMR---------SRGTPRIAGRLLRRVRDFAEV 235
           K       +L  +   +    E   R         SRG  R A  LL+ V     V
Sbjct: 169 K------GRLLHICERENIIFENCSRSVLDAIVKSSRGDMRSAVNLLQTVSQQPRV 218


>gi|30018295|ref|NP_829926.1| DNA polymerase III subunits gamma and tau [Bacillus cereus ATCC
           14579]
 gi|229125539|ref|ZP_04254573.1| DNA polymerase III subunit gamma/tau [Bacillus cereus BDRD-Cer4]
 gi|29893835|gb|AAP07127.1| DNA polymerase III subunit gamma/tau [Bacillus cereus ATCC 14579]
 gi|228657923|gb|EEL13727.1| DNA polymerase III subunit gamma/tau [Bacillus cereus BDRD-Cer4]
          Length = 562

 Score = 66.3 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 68/209 (32%), Gaps = 42/209 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+  E+  GQ      L+  +       E + H  LF GP G GKTT+A+V A+ +   
Sbjct: 11  RPQKFEDVVGQKHVTKTLQNAL-----LQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCE 65

Query: 82  F------------------------RSTSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                                ++  +   ++      +  V  I
Sbjct: 66  HAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKVYII 125

Query: 112 DEIHRLSIIVEEILYPAMED--FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+H LS+     L   +E+    +  ++      +     +SR              N 
Sbjct: 126 DEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKIS---VND 182

Query: 170 LQDRFGIPIRLNFYEIEDLK-TIVQRGAK 197
           + +R    +     ++E     IV R A+
Sbjct: 183 IVERLSTVVTNEGTQVEGEALQIVARAAE 211


>gi|126463125|ref|YP_001044239.1| DNA polymerase III subunits gamma and tau [Rhodobacter sphaeroides
           ATCC 17029]
 gi|126104789|gb|ABN77467.1| DNA polymerase III, subunits gamma and tau [Rhodobacter sphaeroides
           ATCC 17029]
          Length = 580

 Score = 66.3 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 57/266 (21%), Positives = 90/266 (33%), Gaps = 27/266 (10%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+T  +  GQ      LK    A +         +  G  G+GKTT A+++A+ L
Sbjct: 13  ARKYRPQTFADLIGQDAMVRTLKNAFAADRIAHA----FVMTGVRGVGKTTTARIIAKGL 68

Query: 79  GV-NFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEIL-----YPAME 130
                  T GP     G         E R  DV+ +D   R  +     +     Y A  
Sbjct: 69  NCVGPDGTGGPTTEPCGQCEPCRAIAEGRHVDVMEMDAASRTGVGDIREIIDSVHYRAAS 128

Query: 131 DFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
                 ++ E             ++++   +    I ATT +  +   +  R      L 
Sbjct: 129 ARYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLSRCQ-RFDLK 187

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
             E E +   + R A   G  +T +A   I   + G+ R A  L+    D A    A   
Sbjct: 188 RIEPEVMMAHLSRVAGKEGAELTRDALALITRAAEGSVRDAMSLM----DQAIAHGAGET 243

Query: 242 TREIADAALLRLAIDKMGFDQLDLRY 267
           T +   A L      ++  D  DL  
Sbjct: 244 TADQVRAMLGLADRGRV-LDLFDLVM 268


>gi|332290070|ref|YP_004420922.1| DNA polymerase III subunits gamma and tau [Gallibacterium anatis
           UMN179]
 gi|330432966|gb|AEC18025.1| DNA polymerase III subunits gamma and tau [Gallibacterium anatis
           UMN179]
          Length = 724

 Score = 66.3 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 52/266 (19%), Positives = 84/266 (31%), Gaps = 59/266 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP    +  GQ    + L   +       + L H  LF G  G+GKT++A++ A+ L   
Sbjct: 11  RPDQFSDVVGQEHIIAALTNAL-----NNQRLHHAYLFSGTRGVGKTSIARLFAKGLNCE 65

Query: 82  F------------------------RSTSGPVIAKAGDLAALLTNLEDRD------VLFI 111
                                             K  D   LL N++ +       +  I
Sbjct: 66  KGITATPCGECENCRAIKEGNFIDLIEIDAASRTKVEDTRELLDNVQYKPVRGRFKIYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSRHSFNALLKTLEE------------------PPEYVKFLLATTDPQKLPITVL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  I   L   + + +   +Q+  +   +    +A  +IA  ++G+ R A  L     D
Sbjct: 168 SRC-IQFHLKALDADVIAAHLQKLLQKEQIDYQPQALMKIARAAQGSVRDALSL----TD 222

Query: 232 FAEVAHAKTITREIADAALLRLAIDK 257
            A       I     +  L  L  DK
Sbjct: 223 QAIALSNGNINVNDVNMMLGLLDNDK 248


>gi|229188307|ref|ZP_04315358.1| DNA polymerase III subunit gamma/tau [Bacillus cereus ATCC 10876]
 gi|228595175|gb|EEK52943.1| DNA polymerase III subunit gamma/tau [Bacillus cereus ATCC 10876]
          Length = 562

 Score = 66.3 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 69/209 (33%), Gaps = 42/209 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+  E+  GQ      L+  +       E + H  LF GP G GKTT+A+V A+ +   
Sbjct: 11  RPQKFEDVVGQKHVTKTLQNAL-----LQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCE 65

Query: 82  F------------------------RSTSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                                ++  +   ++      +  V  I
Sbjct: 66  HAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKVYII 125

Query: 112 DEIHRLSIIVEEILYPAMED--FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+H LS+     L   +E+    +  ++      +     +SR              N 
Sbjct: 126 DEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKIS---VND 182

Query: 170 LQDRFGIPIRLNFYEIEDLK-TIVQRGAK 197
           + +R    +     ++ED    IV R A+
Sbjct: 183 IVERLSTVVTNEGTQVEDEALQIVARAAE 211


>gi|206972679|ref|ZP_03233619.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus AH1134]
 gi|206732399|gb|EDZ49581.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus AH1134]
          Length = 562

 Score = 66.3 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 69/209 (33%), Gaps = 42/209 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+  E+  GQ      L+  +       E + H  LF GP G GKTT+A+V A+ +   
Sbjct: 11  RPQKFEDVVGQKHVTKTLQNAL-----LQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCE 65

Query: 82  F------------------------RSTSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                                ++  +   ++      +  V  I
Sbjct: 66  HAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKVYII 125

Query: 112 DEIHRLSIIVEEILYPAMED--FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+H LS+     L   +E+    +  ++      +     +SR              N 
Sbjct: 126 DEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKIS---VND 182

Query: 170 LQDRFGIPIRLNFYEIEDLK-TIVQRGAK 197
           + +R    +     ++ED    IV R A+
Sbjct: 183 IVERLSTVVTNEGTQVEDEALQIVARAAE 211


>gi|150401563|ref|YP_001325329.1| ATPase central domain-containing protein [Methanococcus aeolicus
           Nankai-3]
 gi|150014266|gb|ABR56717.1| AAA ATPase central domain protein [Methanococcus aeolicus Nankai-3]
          Length = 372

 Score = 66.3 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 51/241 (21%), Positives = 93/241 (38%), Gaps = 18/241 (7%)

Query: 26  TLEEFTGQVEACSNLKV---FIEAAKARAE-ALDHVLFVGPPGLGKTTLAQVVARELGVN 81
             +E  GQ EA    K+   ++E  +   E A  ++LF G PG GKT LA+ +A E  V 
Sbjct: 123 KFDEVIGQNEAKKKCKIIMKYLENPEIFGEWAPKNILFYGAPGTGKTLLARALATETDVP 182

Query: 82  FRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAMEDFQ 133
                   +     GD +  +  L ++       ++FIDEI  +++  +           
Sbjct: 183 LYLIKATELIGDHVGDGSKQIQELYEKASSSKPCIIFIDEIDAIALSRQYQSLRGDVSEI 242

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           ++ ++ E                IAAT    +L N ++ RF   I+      ED   I++
Sbjct: 243 VNALLTELDGIHDNDG----IITIAATNNPDMLDNAIRSRFEEEIKFEAPNDEDRLKIMK 298

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTP--RIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
                  L   +    +   +++G     I  +L++     A +    +I  +  D  L 
Sbjct: 299 LYMGKIPLNTKNINLKKYVEKTKGMSGRDIKEKLIKPALHKAILEDKNSIEEKDLDIILN 358

Query: 252 R 252
           +
Sbjct: 359 K 359


>gi|32491274|ref|NP_871528.1| hypothetical protein WGLp525 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25166481|dbj|BAC24671.1| dnaX [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 365

 Score = 66.3 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 71/207 (34%), Gaps = 38/207 (18%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+   +  GQ         F++ +    +     L  G  G+GKTTLA+++A+ L   +
Sbjct: 11  RPKIFNDIIGQDHVL----RFLKNSFLDKKIYYSYLISGIRGIGKTTLARLIAKSLNCFY 66

Query: 83  RSTSGP------------------------VIAKAGDLAALLTNLE------DRDVLFID 112
                P                           K  ++  +L N++         +  ID
Sbjct: 67  DINFNPCRICKNCEESEKNCFVDLIEIDAASHTKIENIKEVLDNIKYLPSKGRYKIYIID 126

Query: 113 EIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           E+H LS      L   +E+    +  ++      +  +  LSR   +         T+ L
Sbjct: 127 EVHMLSKYSFNALLKILEEPPNHVKFILATTELNKIPETILSRCLHLQLKEISE--TDIL 184

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAK 197
            +   I      Y  E+   I+ + ++
Sbjct: 185 YNLKKILKLEKIYYEEEALKIISKSSQ 211


>gi|308179718|ref|YP_003923846.1| DNA polymerase III, gamma/tau subunit DnaX [Lactobacillus plantarum
           subsp. plantarum ST-III]
 gi|308045209|gb|ADN97752.1| DNA polymerase III, gamma/tau subunit DnaX [Lactobacillus plantarum
           subsp. plantarum ST-III]
          Length = 565

 Score = 66.3 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 78/226 (34%), Gaps = 21/226 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  +E  GQ      LK  I       +     LF GP G GKT+ A++ A+ +  + 
Sbjct: 10  RPQRFDEIVGQQMITQTLKNAI----MTHQTSHAYLFTGPRGTGKTSAAKIFAKAINCHH 65

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P      +    +T  +  DV+ ID      +  +  I ++  Y   +      +
Sbjct: 66  LVDGEPCNEC--ETCTAITKGQLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQADYKVYI 123

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++   +    I ATT    +   +  R            +  
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPLTIISRTQRFDFRRITAKDSY 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
             +V        +   ++A   IA  + G  R A  +L +V  F +
Sbjct: 184 DRMV-YILNEKDVTYDEKALRVIAAAAEGGMRDALSILDQVISFGD 228


>gi|301300447|ref|ZP_07206647.1| DNA polymerase III, subunit gamma and tau [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300851944|gb|EFK79628.1| DNA polymerase III, subunit gamma and tau [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 579

 Score = 66.3 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 77/226 (34%), Gaps = 21/226 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+   +  GQ      LK  I       +     LF GP G GKT+ A++ A+ +   F
Sbjct: 11  RPQRFMDLVGQEMVTKTLKNAI----ITHQTSHAYLFTGPRGTGKTSAAKIFAKAINCRF 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P      +    +T     DV+ ID      +  +  I +++ Y   E      +
Sbjct: 67  SKEGEPCNEC--ETCKAITEGCLNDVIEIDAASNNGVEEIRDIRDKVKYAPTEADYKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++   +    I ATT    +   +  R            E +
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPANVVFILATTEPHKIPATIISRTQ-RFDFKRITAESI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
              +        +   D+A   IA  + G  R A  LL +V  F +
Sbjct: 184 LQRMIYILDQKNVDYDDKALKVIAKAAEGGMRDALSLLDQVISFGD 229


>gi|262038579|ref|ZP_06011948.1| DNA polymerase III, subunit gamma and tau [Leptotrichia
           goodfellowii F0264]
 gi|261747448|gb|EEY34918.1| DNA polymerase III, subunit gamma and tau [Leptotrichia
           goodfellowii F0264]
          Length = 501

 Score = 66.3 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 46/244 (18%), Positives = 85/244 (34%), Gaps = 60/244 (24%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKA--RAEALDHV-LFVGPPGLGKTTLAQVVAR 76
              RP+  +E  GQ            A K   R + L H  LF GP G+GKTT+A+++A+
Sbjct: 12  RKYRPQNFDEIAGQEFVT-------RAIKNSLREDKLSHAYLFTGPRGVGKTTIARLIAK 64

Query: 77  ELGV-------------------------NFRSTSGPVIAKAGDLAALLTNL------ED 105
            +                           +             ++  L   +        
Sbjct: 65  GVNCLNNGITDNPCGVCDNCREIAQGISMDMIEIDAASNRGIDEIRELKEKINYQPVKGR 124

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
           R +  IDE+H L+      L   +E+          P A  + I         ATT +  
Sbjct: 125 RKIYIIDEVHMLTKEAFNALLKTLEE----------PPAHVIFIL--------ATTEIDK 166

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           + + +  R          + +D+  +++  A+   + + DE+   I  +S G+ R +  +
Sbjct: 167 IPDTVISRCQ-RYDFLPIDEKDITKLLKEVAEKENITIDDESLDLIYRKSEGSARDSFSI 225

Query: 226 LRRV 229
             +V
Sbjct: 226 FEQV 229


>gi|218895159|ref|YP_002443570.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus G9842]
 gi|228898776|ref|ZP_04063060.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis IBL
           4222]
 gi|228963120|ref|ZP_04124291.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|218541669|gb|ACK94063.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus G9842]
 gi|228796576|gb|EEM44013.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228860868|gb|EEN05244.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis IBL
           4222]
          Length = 562

 Score = 66.3 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 69/209 (33%), Gaps = 42/209 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+  E+  GQ      L+  +       E + H  LF GP G GKTT+A+V A+ +   
Sbjct: 11  RPQKFEDVVGQKHVTKTLQNAL-----LQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCE 65

Query: 82  F------------------------RSTSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                                ++  +   ++      +  V  I
Sbjct: 66  HAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKVYII 125

Query: 112 DEIHRLSIIVEEILYPAMED--FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+H LS+     L   +E+    +  ++      +     +SR              N 
Sbjct: 126 DEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKIS---VND 182

Query: 170 LQDRFGIPIRLNFYEIEDLK-TIVQRGAK 197
           + +R    +     ++ED    IV R A+
Sbjct: 183 IVERLSTVVTNEGTQVEDEALQIVARAAE 211


>gi|19921076|ref|NP_609399.1| replication factor C subunit 3 [Drosophila melanogaster]
 gi|195339815|ref|XP_002036512.1| GM18361 [Drosophila sechellia]
 gi|195578201|ref|XP_002078954.1| GD23698 [Drosophila simulans]
 gi|7533196|gb|AAF63387.1|AF247499_1 replication factor C subunit 3 [Drosophila melanogaster]
 gi|21430740|gb|AAM51048.1| SD11293p [Drosophila melanogaster]
 gi|22946159|gb|AAF52944.2| replication factor C subunit 3 [Drosophila melanogaster]
 gi|194130392|gb|EDW52435.1| GM18361 [Drosophila sechellia]
 gi|194190963|gb|EDX04539.1| GD23698 [Drosophila simulans]
 gi|220950744|gb|ACL87915.1| RfC3-PA [synthetic construct]
 gi|220959368|gb|ACL92227.1| RfC3-PA [synthetic construct]
          Length = 332

 Score = 66.3 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 73/239 (30%), Gaps = 39/239 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP  L++     E  S +  FI       + L H+LF GPPG GKT+     AR
Sbjct: 12  PWVEKYRPSGLDDLISHEEIISTITRFIS-----RKQLPHLLFYGPPGTGKTSTILACAR 66

Query: 77  ------ELGVNFRSTSGPVIAKAGDLA-ALLTNLEDRDVLF-------IDEIHRLSIIVE 122
                 +        +       G +   +L     R +         +DE   ++   +
Sbjct: 67  QLYSPQQFKSMVLELNASDDRGIGIVRGQILNFASTRTIFCDTFKLIILDEADAMTNDAQ 126

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             L   +E +                              +  +   LQ R     R   
Sbjct: 127 NALRRIIEKYT------------------DNVRFCVICNYLSKIIPALQSRC-TRFRFAP 167

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR-RVRDFAEVAHAKT 240
              + +   +++  +   + +T++    +   ++G  R    +L+  V  F  V     
Sbjct: 168 LSQDQMMPRLEKIIEAEAVQITEDGKRALLTLAKGDMRKVLNVLQSTVMAFDTVNEDNV 226


>gi|70984108|ref|XP_747574.1| DNA replication factor C subunit  Rfc4 [Aspergillus fumigatus
           Af293]
 gi|66845201|gb|EAL85536.1| DNA replication factor C subunit  Rfc4, putative [Aspergillus
           fumigatus Af293]
 gi|159122360|gb|EDP47481.1| DNA replication factor C subunit Rfc4, putative [Aspergillus
           fumigatus A1163]
          Length = 348

 Score = 66.3 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 74/239 (30%), Gaps = 35/239 (14%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   +   RP  L++  G  E    LK+      A+   + HV+  G PG+GKTT    +
Sbjct: 27  ELPWVEKYRPIFLDDIVGNTETIERLKII-----AKDGNMPHVIISGMPGIGKTTSILCL 81

Query: 75  AR-----ELGVNFRSTSGPVIAKAGDLAALLTN-----LEDRDVLFIDEIHRLSIIVEEI 124
           AR              +         +                ++ +DE   ++   ++ 
Sbjct: 82  ARQLLGEAYKEAVLELNASDERGISRIKGFAQKKVTLPPGRHKIVILDEADSMTPGAQQA 141

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           L   ME +                   S      A  +   +  P+Q R  I       +
Sbjct: 142 LRRTMEIYS------------------STTRFAFACNQSNKIIEPIQSRCAILRYARLTD 183

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD-FAEVAHAKTIT 242
            + +K  +++      +  T++    +   + G  R A   L+     F  V+      
Sbjct: 184 AQVVKR-LKQICDAEKVEHTEDGIAALVFSAEGDMRQAINNLQSTWSGFGLVSGDNVFR 241


>gi|254555739|ref|YP_003062156.1| DNA-directed DNA polymerase III, gamma/tau subunit [Lactobacillus
           plantarum JDM1]
 gi|254044666|gb|ACT61459.1| DNA-directed DNA polymerase III, gamma/tau subunit [Lactobacillus
           plantarum JDM1]
          Length = 565

 Score = 66.3 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 78/226 (34%), Gaps = 21/226 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  +E  GQ      LK  I       +     LF GP G GKT+ A++ A+ +  + 
Sbjct: 10  RPQRFDEIVGQQMITQTLKNAI----MTHQTSHAYLFTGPRGTGKTSAAKIFAKAINCHH 65

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P      +    +T  +  DV+ ID      +  +  I ++  Y   +      +
Sbjct: 66  LVDGEPCNEC--ETCTAITKGQLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQADYKVYI 123

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++   +    I ATT    +   +  R            +  
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPLTIISRTQRFDFRRITAKDSY 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
             +V        +   ++A   IA  + G  R A  +L +V  F +
Sbjct: 184 DRMV-YILNEKDVTYDEKALRVIAAAAEGGMRDALSILDQVISFGD 228


>gi|229153802|ref|ZP_04281934.1| DNA polymerase III subunit gamma/tau [Bacillus cereus ATCC 4342]
 gi|228629671|gb|EEK86366.1| DNA polymerase III subunit gamma/tau [Bacillus cereus ATCC 4342]
          Length = 558

 Score = 66.3 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 69/209 (33%), Gaps = 42/209 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+  E+  GQ      L+  +       E + H  LF GP G GKTT+A+V A+ +   
Sbjct: 11  RPQKFEDVVGQKHVTKTLQNAL-----LQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCE 65

Query: 82  F------------------------RSTSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                                ++  +   ++      +  V  I
Sbjct: 66  HAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKVYII 125

Query: 112 DEIHRLSIIVEEILYPAMED--FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+H LS+     L   +E+    +  ++      +     +SR              N 
Sbjct: 126 DEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKIS---VND 182

Query: 170 LQDRFGIPIRLNFYEIEDLK-TIVQRGAK 197
           + +R    +     ++ED    IV R A+
Sbjct: 183 IVERLSTVVNNEGTQVEDEALQIVARAAE 211


>gi|70985298|ref|XP_748155.1| DNA replication factor C subunit Rfc3 [Aspergillus fumigatus Af293]
 gi|66845783|gb|EAL86117.1| DNA replication factor C subunit Rfc3, putative [Aspergillus
           fumigatus Af293]
 gi|159125922|gb|EDP51038.1| DNA replication factor C subunit Rfc3, putative [Aspergillus
           fumigatus A1163]
          Length = 396

 Score = 66.3 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 37/242 (15%), Positives = 74/242 (30%), Gaps = 34/242 (14%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
                   +   RP TL++ +G  +  + +  FIEA +     L H+L  GPPG GKT+ 
Sbjct: 40  EAQDNLPWVEKYRPNTLDDVSGHQDILATINKFIEANR-----LPHLLLYGPPGTGKTST 94

Query: 71  AQVVA------RELGVNFRSTSGPVIAKAGDLAALLTN-LEDRDVL-------------- 109
              +A        +       +         +   +      + +               
Sbjct: 95  ILALARRIYGSNNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMAAPSASSGSSLA 154

Query: 110 -----FIDEIHRLSIIVEEILYPAMEDFQLD--LMVGEGPSARSVKINLSRFTLIAATTR 162
                 +DE   ++   +  L   ME +  +    +    + +     LSR T    +  
Sbjct: 155 SFKLIILDEADAMTSTAQMALRRIMERYTANTRFCIIANYTHKLSPALLSRCTRFRFSPL 214

Query: 163 VGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
                  L D+     ++   + E + ++V+        A+    AC  + R        
Sbjct: 215 KEQDIRSLVDQVIEKEQIRI-QPEAVSSLVRLSKGDMRRALNVLQACHASSRPLPMKNAT 273

Query: 223 GR 224
             
Sbjct: 274 ND 275


>gi|332686114|ref|YP_004455888.1| DNA polymerase III subunits gamma and tau [Melissococcus plutonius
           ATCC 35311]
 gi|332370123|dbj|BAK21079.1| DNA polymerase III subunits gamma and tau [Melissococcus plutonius
           ATCC 35311]
          Length = 585

 Score = 66.3 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 87/249 (34%), Gaps = 25/249 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           R +  ++  GQ      LK  I   K         LF GP G GKT+ A++ A+ +    
Sbjct: 11  RSQRFDDIVGQKAITQTLKNAIAQKKTSHAY----LFTGPRGTGKTSAAKIFAKAINCKH 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P      D+   +T+    DV+ ID      +  +  I +++ Y          +
Sbjct: 67  NDDGEP--CNICDVCLAITSGSLNDVIEIDAASNNGVEEIRDIRDKVKYAPTSSDYKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT    +   +  R           + D+
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPPNVVFILATTEPHKIPATIISRTQ-RFDFRRINVHDI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF----AEVAHAKTITRE 244
              +    K T +   ++A   +A  + G  R A  +L ++  F      V  A+ IT  
Sbjct: 184 VHHLAFILKETSIEYEEQALYTVAQTAEGGMRDALSILDQIISFNNKKVTVEDARRITGS 243

Query: 245 IADAALLRL 253
           + D  + + 
Sbjct: 244 LTDEMMDQY 252


>gi|293609325|ref|ZP_06691627.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827777|gb|EFF86140.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 721

 Score = 66.3 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 51/262 (19%), Positives = 81/262 (30%), Gaps = 57/262 (21%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RPR   E  GQ          + +A  R       LF G  G+GKTT+A+++A+ L
Sbjct: 6   ARKYRPRNFNELVGQNHV----SRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCL 61

Query: 79  GVNFRSTS------------------------GPVIAKAGDLAALLTNL------EDRDV 108
                 TS                             K  D   LL N+          V
Sbjct: 62  NCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKV 121

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
             IDE+H LS      L   +E+                         + ATT    L  
Sbjct: 122 YLIDEVHMLSTHSFNALLKTLEE------------------PPEHVKFLFATTDPQKLPI 163

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            +  R  +   L    ++++   +    +   +    +A  +IA  ++G+ R A  L   
Sbjct: 164 TVISRC-LQFTLRPLAVDEITKHLGAILEKEQITADQDAIWQIAESAQGSLRDALSL--- 219

Query: 229 VRDFAEVAHAKTITREIADAAL 250
             D A      ++  +     L
Sbjct: 220 -TDQAIAYGQGSVHHQDVKEML 240


>gi|114770074|ref|ZP_01447612.1| DNA polymerase III subunits gamma and tau [alpha proteobacterium
           HTCC2255]
 gi|114548911|gb|EAU51794.1| DNA polymerase III subunits gamma and tau [alpha proteobacterium
           HTCC2255]
          Length = 594

 Score = 66.3 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 89/249 (35%), Gaps = 26/249 (10%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T  +  GQ      LK   EA +         +  G  G GKTT A+++A+ +
Sbjct: 16  ARKYRPETFSDMVGQDAMVRTLKNAFEADRIAHA----FVMTGIRGTGKTTTARIIAKGM 71

Query: 79  GV-NFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEIL-----YPAME 130
                  T GP     G     L+ ++ R  DV+ +D   R  +     +     Y A  
Sbjct: 72  NCVGVDGTGGPTTEPCGQCEHCLSIIQGRHVDVMEMDAASRTGVGDIREIIDSVHYSAAS 131

Query: 131 DFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
                 ++ E             ++++   +    I ATT +  +   +  R      L 
Sbjct: 132 ARYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKIPVTVLSRCQ-RFDLR 190

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
             E +D+  ++++ A+     ++ +A   I   S G+ R A  LL    D A    A   
Sbjct: 191 RIEPDDMMELLKKIAESEEAKISQDALALITRGSEGSARDAISLL----DQAIAHGAGET 246

Query: 242 TREIADAAL 250
             +   A L
Sbjct: 247 NADQVRAML 255


>gi|218768446|ref|YP_002342958.1| DNA polymerase III subunits gamma and tau [Neisseria meningitidis
           Z2491]
 gi|121052454|emb|CAM08790.1| DNA polymerase III tau and gamma chains [Neisseria meningitidis
           Z2491]
          Length = 709

 Score = 66.3 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 41/259 (15%), Positives = 76/259 (29%), Gaps = 59/259 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T  +  GQ      L+  ++  +     L H  L  G  G+GKTT+A+++A+ L   
Sbjct: 11  RPKTFADLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCE 65

Query: 82  FRS------------------------TSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                                ++  +L N +         V  I
Sbjct: 66  NAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYII 125

Query: 112 DEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+H LS      +   +E+    +  ++      +     LSR                
Sbjct: 126 DEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNM------- 178

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
                           + +   +        +A    A   +   + G+ R A  LL + 
Sbjct: 179 --------------TAQQVARHLAYVLDSEKIAYDPPALQLLGRAAAGSMRDALSLLDQA 224

Query: 230 RDFAEVAHAKTITREIADA 248
                   A+   R++  A
Sbjct: 225 IALGSGKVAENDVRQMIGA 243


>gi|310792410|gb|EFQ27937.1| replication factor C [Glomerella graminicola M1.001]
          Length = 361

 Score = 66.3 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 44/242 (18%), Positives = 80/242 (33%), Gaps = 39/242 (16%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   +   RP  L++  G  E    LK+      A+   + HV+  G PG+GKTT    +
Sbjct: 36  ELPWVEKYRPVFLDDVVGNTETIDRLKII-----AKEGNMPHVIISGMPGIGKTTSVLCL 90

Query: 75  ARE-----LGVNFRSTSGPVIAKAGDLAALLTNLEDRDV---------LFIDEIHRLSII 120
           AR+             +         +   +     + V         + +DE   ++  
Sbjct: 91  ARQLLGDSYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPQGRHKLVILDEADSMTSG 150

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            ++ L   ME +                 N +RF    A  +   +  PLQ R  I    
Sbjct: 151 AQQALRRTMEIYS----------------NTTRFAF--ACNQSNKIIEPLQSRCAILRYA 192

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA-GRLLRRVRDFAEVAHAK 239
              + + +K ++Q   +   +  +D+    +   + G  R A   L      F  V+   
Sbjct: 193 RLTDEQVVKRLLQ-IIEAEKVEYSDDGLAALVFSAEGDMRQAINNLQSTFAGFGFVSGDN 251

Query: 240 TI 241
             
Sbjct: 252 VF 253


>gi|260887501|ref|ZP_05898764.1| DNA polymerase III, gamma and tau subunit [Selenomonas sputigena
           ATCC 35185]
 gi|260862788|gb|EEX77288.1| DNA polymerase III, gamma and tau subunit [Selenomonas sputigena
           ATCC 35185]
          Length = 691

 Score = 66.3 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 58/288 (20%), Positives = 100/288 (34%), Gaps = 37/288 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP + ++  GQ      L   I A +         LF GP G GKT+ A+++A+ L    
Sbjct: 38  RPGSFKDLVGQTAVSRTLSHAISAGRIAHAY----LFSGPRGTGKTSTAKILAKSLNCEK 93

Query: 83  RSTSGPVIAKAGDLAALLTNLEDR--DVLFID-----EIHRLSIIVEEILYPAMEDFQLD 135
               GP     G         +    DV  ID      I  +  + E++ +   E     
Sbjct: 94  ----GPTPEPCGVCKNCTKIADGTALDVFEIDAASNRGIDEMRDLREKVKFTPAEGRYKV 149

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             ++++   +    I ATT    +   +Q R           +E
Sbjct: 150 YIIDEVHMLTTEAFNALLKTLEEPPAHVVFILATTEPHKVPATIQSRCQ-RFDFRRITVE 208

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +++  +   A+   +    EA   IA ++ G  R A  LL    D        T+T    
Sbjct: 209 EIEARLAYVAQEMKIPCEKEALRLIARQADGGMRDALSLL----DQCASLDGDTLTAACV 264

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRD 294
           +  L  +  + +       R    I     G    +ETI+  L+  +D
Sbjct: 265 EENLGLIGHEPI------YRLTKAIGERAKGEV--LETIAELLALGKD 304


>gi|326442330|ref|ZP_08217064.1| DNA polymerase III subunits gamma and tau [Streptomyces
           clavuligerus ATCC 27064]
          Length = 719

 Score = 66.3 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 42/239 (17%), Positives = 75/239 (31%), Gaps = 27/239 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP +  E  GQ      L+  +   +         LF GP G GKTT A+++AR
Sbjct: 5   ALYRRYRPESFAEVIGQEHVTDPLQQALRNNRVNHAY----LFSGPRGCGKTTSARILAR 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR----DVLFIDEIHRLSII------VEEILY 126
            L        GP     G+  +      +     DV+ ID      +        +    
Sbjct: 61  CLNCE----QGPTPTPCGECLSCRDLARNGPGSIDVIEIDAASHGGVDDARELREKAFFG 116

Query: 127 PAMEDFQLDLMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
           PA   +++ ++         G     + V+        I ATT    +   ++ R     
Sbjct: 117 PASSRYKIYIIDEAHMVTPQGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSR-THHY 175

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                    L+  +        + V D     +     G+ R +  ++ ++   A    
Sbjct: 176 PFRLVPPSTLREYLGEVCGHEKIPVADGVLPLVVRAGAGSVRDSMSVMDQLLAGATDEG 234


>gi|325479373|gb|EGC82469.1| DNA polymerase III, subunit gamma and tau [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 621

 Score = 66.3 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 49/255 (19%), Positives = 93/255 (36%), Gaps = 32/255 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T +E  GQ    + LK      + +     H  +F G  G GKTT A++ A+ +   
Sbjct: 10  RPKTFDEVLGQDRVVNVLK-----NQVKNNNFSHAYIFAGERGCGKTTCAKIFAKAINCL 64

Query: 82  FRSTSGPVIA----KAGDLAALLTNLEDRDVLFIDEIHR-----LSIIVEEILYPAMEDF 132
                 P +     KA D  + +      D++ +D         +  + + ++YP  +  
Sbjct: 65  HPKDGSPCLECENCKAIDDESTI------DIIEMDAASNRRIDDIRNLKDNVIYPPNKLK 118

Query: 133 QLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
               ++ E             + ++   S    I ATT +  + N +  R       N  
Sbjct: 119 YKVYIIDEAHMITREAFNALLKIMEEPPSHLVFILATTEIDKIPNTILSRVQ-NFEFNKI 177

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           +   +K  +        + + +EA   I  ++ G  R A  +L +V  + +    K    
Sbjct: 178 DSSKIKEQINIILDDKDIKMENEAIDLIIRKANGAMRDALSILDQVISY-DSKDFKISDV 236

Query: 244 EIADAALLRLAIDKM 258
           E     +    IDK+
Sbjct: 237 EELLGVVDFYDIDKL 251


>gi|302759525|ref|XP_002963185.1| hypothetical protein SELMODRAFT_79406 [Selaginella moellendorffii]
 gi|300168453|gb|EFJ35056.1| hypothetical protein SELMODRAFT_79406 [Selaginella moellendorffii]
          Length = 366

 Score = 66.3 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 53/196 (27%), Positives = 86/196 (43%), Gaps = 21/196 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTN-------LEDRD 107
           VLF GPPG GKT+ A+V+A + GV        V+     G+   LL++         D  
Sbjct: 125 VLFEGPPGCGKTSCARVIASQAGVPLLYVPLEVVTSKYYGESERLLSSVFNAGNDFPDGA 184

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           ++F+DEI  L+   +  ++ A     L +++ +       K    R  +IAAT R   L 
Sbjct: 185 IVFLDEIDSLATSRDSDMHEAT-RRMLSVLLRQMDGFEQDK----RIVVIAATNRKQDLD 239

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             L  RF   I  +  +++  + IV + A+            E++  +  +  ++GR LR
Sbjct: 240 PALLSRFDASITFDLPDLQTREEIVAQYARHLSRK-------ELSSVAATSEGMSGRDLR 292

Query: 228 RVRDFAEVAHAKTITR 243
            V   AE   A  I R
Sbjct: 293 DVCQQAERKWASKILR 308


>gi|260494910|ref|ZP_05815039.1| DNA polymerase III, subunits gamma and tau [Fusobacterium sp.
           3_1_33]
 gi|260197353|gb|EEW94871.1| DNA polymerase III, subunits gamma and tau [Fusobacterium sp.
           3_1_33]
          Length = 482

 Score = 66.3 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 101/242 (41%), Gaps = 22/242 (9%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVAREL 78
              RP +  E +G+ E   +LK+ ++      +++ H  LF GP G+GKTT+A+++A+ +
Sbjct: 7   RKYRPSSFSEVSGENEIVKSLKLSLK-----NKSMAHAYLFSGPRGVGKTTVARLIAKGV 61

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQ 133
                  +G    +  +  A+       D++ ID      I  +  + E+I Y  +E  +
Sbjct: 62  NCLNLKENGEPCNECKNCKAINEG-RFSDLIEIDAASNRSIDEIRSLKEKINYQPVEGLK 120

Query: 134 LDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
              ++ E             ++++   +    I ATT +  +   +  R          +
Sbjct: 121 KVYIIDEAHMLTKEAFNALLKTLEEPPAHVIFILATTELEKILPTIISRCQ-RYDFKPLD 179

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +E++K+ ++   K   L++TD+    I   S G+ R +  +L R+   A          E
Sbjct: 180 LEEMKSGLEHILKEENLSMTDDVYPVIYENSSGSMRDSISILERLIVTANGKEINLKIAE 239

Query: 245 IA 246
             
Sbjct: 240 DT 241


>gi|258569615|ref|XP_002543611.1| activator 1 40 kDa subunit [Uncinocarpus reesii 1704]
 gi|237903881|gb|EEP78282.1| activator 1 40 kDa subunit [Uncinocarpus reesii 1704]
          Length = 278

 Score = 66.3 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 74/230 (32%), Gaps = 44/230 (19%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   +   RP  L++  G  E    LK+      AR   + HV+  G PG+GKTT    +
Sbjct: 27  ELPWVEKYRPVFLDDVVGNTETIERLKII-----ARDGNMPHVIISGMPGIGKTTSILCL 81

Query: 75  AR-----ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDV---------LFIDEIHRLSII 120
           AR              +         +   +     + V         + +DE   ++  
Sbjct: 82  ARQMLGDAYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGKHKLVILDEADSMTSG 141

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            ++ L   ME +                   +RF    A  +   +  PLQ R  I    
Sbjct: 142 AQQALRRTMEIYSTT----------------TRFAF--ACNQSNKIIEPLQSRCAILRYS 183

Query: 181 NFYEIEDLKTIVQR---GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
              +      IV+R     K   +  +D+    +   + G  R A   L+
Sbjct: 184 RLTD----TQIVERLDQICKAEDVKHSDDGIAALVFSAEGDMRQAINNLQ 229


>gi|298368606|ref|ZP_06979924.1| DNA polymerase III, gamma/tau subunit [Neisseria sp. oral taxon 014
           str. F0314]
 gi|298282609|gb|EFI24096.1| DNA polymerase III, gamma/tau subunit [Neisseria sp. oral taxon 014
           str. F0314]
          Length = 718

 Score = 66.3 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 68/230 (29%), Gaps = 39/230 (16%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGP 62
              ++ R +          RP+T  +  GQ      L+  ++  +     L H  L  G 
Sbjct: 11  EFIIIQRRIMAYQVLARKWRPKTFADLVGQEHVVKALRNALDEGR-----LHHAYLLTGT 65

Query: 63  PGLGKTTLAQVVARELGVNF------------------------RSTSGPVIAKAGDLAA 98
            G+GKTT+A+++A+ L                                        ++  
Sbjct: 66  RGVGKTTIARILAKSLNCGHAEHGEPCGVCESCTQIDAGRYVDLLEIDAASNTGIDNIRE 125

Query: 99  LLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKIN 150
           +L N +         V  IDE+H LS      +   +E+    +  ++      +     
Sbjct: 126 VLENAQYAPTAGRYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTV 185

Query: 151 LSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
           LSR                      +      YE   L+ I + GA    
Sbjct: 186 LSRCLQFVLRNMTTQQVADHLAHV-LESEKIPYEATALQLIGRAGAGSMR 234


>gi|166033190|ref|ZP_02236019.1| hypothetical protein DORFOR_02912 [Dorea formicigenerans ATCC
           27755]
 gi|166027547|gb|EDR46304.1| hypothetical protein DORFOR_02912 [Dorea formicigenerans ATCC
           27755]
          Length = 522

 Score = 66.3 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 59/269 (21%), Positives = 93/269 (34%), Gaps = 30/269 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP   E+  GQ      LK  IEA +         LF G  G GKTT+A++ A+
Sbjct: 2   ALYRKFRPNEFEDVKGQDAIVRTLKNQIEADRIGHAY----LFCGTRGTGKTTVAKIFAK 57

Query: 77  ELGVNFRSTSGPVIAKAGDLA--ALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAM 129
            +         P     G+ A    +      +V+ ID      +  +  I EE+ Y   
Sbjct: 58  AVNCEHPVDGSP----CGECAVCKAIAAGNSMNVIEIDAASNNGVDNIREIREEVAYRPT 113

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           E      ++ E             ++++        I ATT    +   +  R       
Sbjct: 114 EGRYKVYIIDEVHMLSIGAFNALLKTLEEPPEYVIFILATTEAHKIPVTILSRCQRYDFK 173

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
               IE +   +Q      G  V ++A   IA    G+ R A  LL +   F      + 
Sbjct: 174 RI-SIETISARLQELINKEGWDVEEKAVRYIARMGDGSMRDALSLLDQCAAFYI---GQK 229

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLT 269
           +T +     L   A+D   F +L  + L 
Sbjct: 230 LTYDHVLEVL--GAVDTEVFSRLLRKILD 256


>gi|254372143|ref|ZP_04987635.1| DNA polymerase III [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|151569873|gb|EDN35527.1| DNA polymerase III [Francisella novicida GA99-3549]
          Length = 546

 Score = 66.3 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 79/249 (31%), Gaps = 57/249 (22%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP++  E  GQ  A ++L   +E  K         LF G  G+GKTTL +++A+
Sbjct: 5   ALARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAY----LFTGTRGVGKTTLGRLLAK 60

Query: 77  ELGVNF------------------------RSTSGPVIAKAGDLAALLTNLE------DR 106
            L                                        +   +L N++        
Sbjct: 61  CLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRY 120

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164
            V  IDE+H LS      L   +E+    +  ++      +     LSR   +       
Sbjct: 121 KVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQ 180

Query: 165 LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGR 224
                              +I+D   I+        +   +++   IA  ++G+ R A  
Sbjct: 181 A------------------DIKDQLKII---LAKENINSDEQSLEYIAYHAKGSLRDALS 219

Query: 225 LLRRVRDFA 233
           LL +   F 
Sbjct: 220 LLDQAISFC 228


>gi|325185486|emb|CCA19969.1| ribosome biogenesis ATPase RIX7 putative [Albugo laibachii Nc14]
          Length = 770

 Score = 66.3 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 60/232 (25%), Positives = 83/232 (35%), Gaps = 24/232 (10%)

Query: 23  RPRT-LEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQV 73
           RPRT   +F G       +K  IE      E   H        +L  GPPG GKT LA  
Sbjct: 153 RPRTRYSDFGGIHSILQEVKELIEYPLTHPEVYVHLGVEPPRGILLHGPPGTGKTMLANS 212

Query: 74  VARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEIL 125
           +A E G  F   S P I           +  L          ++FIDEI  ++    E +
Sbjct: 213 IAGESGAAFIRISAPEIVSGMSGESEQKVRELFQEAVKNAPAIVFIDEIDAITPKR-ETV 271

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183
              ME   +  ++    S            +I AT R   L + L+   RF   I L   
Sbjct: 272 QRGMERRIVAQLLTSIDSLSLENTGGKPVLIIGATNRPDALDSALRRAGRFDREICLGIP 331

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
           +     +I+Q+ A    L      A +    +R TP   G  L  +   A V
Sbjct: 332 DETARMSILQKLAGKMRLD----GAFDFQEIARKTPGYVGADLVSLTKEAAV 379



 Score = 47.8 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 46/219 (21%), Positives = 76/219 (34%), Gaps = 15/219 (6%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD-- 107
           E    VL  GPPG GKT LA+ +A E   NF S  GP +     G+    +  +  R   
Sbjct: 502 EMPAGVLLYGPPGCGKTLLAKAIANESEANFISIKGPELLDKYVGESERAVRQVFQRARA 561

Query: 108 ----VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
               V+F DE+  L       +     +   + +V +  +      +     +IAAT R 
Sbjct: 562 SSPCVIFFDELDALCPRRSNGMGYDSGNSVTERVVNQLLTEMDGLDSRKNVFVIAATNRP 621

Query: 164 GLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQ---RGAKLTGLAVTDEAACEIAMRSRGT 218
            ++   +    R    + +     ED  +I+Q   R  +L         A +   R  G 
Sbjct: 622 DIIDPAMLRPGRLDKLLYVPLPVPEDRLSILQTVTRRCRLDPSICLSSIALD--QRCDGF 679

Query: 219 PRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257
                  L R    A +  A     +     + +    +
Sbjct: 680 SGADISALVREAGLAALRDADLHALDPCHLCIAQAHFQQ 718


>gi|320040847|gb|EFW22780.1| DNA replication factor C subunit [Coccidioides posadasii str.
           Silveira]
          Length = 398

 Score = 66.3 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 66/189 (34%), Gaps = 32/189 (16%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
                   +   RP TL++ +G  +  + +  FIE+ +     L H+L  GPPG GKT+ 
Sbjct: 38  EAEDNLPWVEKYRPSTLDDVSGHQDIIATINRFIESNR-----LPHLLLYGPPGTGKTST 92

Query: 71  AQVVARE-------------------LGVNFRSTSGPVIAKAGDLAALL------TNLED 105
              +AR+                    G++         A    + ++       +NL  
Sbjct: 93  ILALARQIYGVKNVRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMTPGGQAGSNLGA 152

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQLD--LMVGEGPSARSVKINLSRFTLIAATTRV 163
             ++ +DE   ++   +  L   ME +  +    +    + +     LSR T    +   
Sbjct: 153 FKLIILDEADAMTAAAQMALRRIMEKYTANTRFCIIANYTHKLTPALLSRCTRFRFSPLK 212

Query: 164 GLLTNPLQD 172
                 L D
Sbjct: 213 EQDIRVLVD 221


>gi|226954137|ref|ZP_03824601.1| DNA polymerase III subunit Tau [Acinetobacter sp. ATCC 27244]
 gi|226835178|gb|EEH67561.1| DNA polymerase III subunit Tau [Acinetobacter sp. ATCC 27244]
          Length = 661

 Score = 66.3 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 78/248 (31%), Gaps = 53/248 (21%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RPR   E  GQ          + +A  R       LF G  G+GKTT+A+++A+ L
Sbjct: 6   ARKYRPRNFNELVGQNHV----SRALTSALERGRLHHAYLFTGTRGVGKTTIARILAKCL 61

Query: 79  GVNFRSTS------------------------GPVIAKAGDLAALLTNL------EDRDV 108
                 TS                             K  D   LL N+          V
Sbjct: 62  NCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKV 121

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
             IDE+H LS      L   +E+                         + ATT    L  
Sbjct: 122 YLIDEVHMLSTHSFNALLKTLEE------------------PPEHVKFLFATTDPQKLPI 163

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            +  R  +   L    ++++   +        +    +A  +IA  ++G+ R A  L  +
Sbjct: 164 TVVSRC-LQFTLRPLAVDEITEHLTAILAKEHIDADQDAIWQIAESAQGSLRDALSLTDQ 222

Query: 229 VRDFAEVA 236
              + + A
Sbjct: 223 AIAYGQGA 230


>gi|220932911|ref|YP_002509819.1| DNA polymerase III, subunits gamma and tau [Halothermothrix orenii
           H 168]
 gi|219994221|gb|ACL70824.1| DNA polymerase III, subunits gamma and tau [Halothermothrix orenii
           H 168]
          Length = 588

 Score = 66.3 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 87/229 (37%), Gaps = 25/229 (10%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
              RP+   +  GQ      LK  +E+ +         LF GP G GKT+ A+V A  L 
Sbjct: 8   RKYRPQNFNDLVGQHHVVRTLKNALESGRIAHAY----LFAGPRGTGKTSTAKVFAMALN 63

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDR--DVLFID-----EIHRLSIIVEE-ILYPAMED 131
                  GP     G         + +  DV+ ID      I  +  + E+   YP   +
Sbjct: 64  C----IHGPTTEPCGQCENCRKIQKGQSIDVIEIDAASNRGIDEIRELREKVKFYPNEGE 119

Query: 132 FQLDL-----MVGEGPSA---RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +++ +     M+ +G      ++++    +   I ATT    + N +  R       +  
Sbjct: 120 YKVYIIDEVHMLTKGAFNALLKTLEEPPEKVVFILATTEPHQVINTILSRCQ-RFDFSLL 178

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
            + +++  ++   +   +   +EA   +A  + G  R A  LL +   +
Sbjct: 179 PVREIQERLRYICEKEEVEFEEEALNILARSANGGLRDAISLLDQAISY 227


>gi|282891156|ref|ZP_06299660.1| hypothetical protein pah_c047o064 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281498973|gb|EFB41288.1| hypothetical protein pah_c047o064 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 512

 Score = 66.3 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 54/239 (22%), Positives = 85/239 (35%), Gaps = 20/239 (8%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +S         RP+  +E  GQ    + LK  I+  +         LF G  G GKTTLA
Sbjct: 1   MSHYQVSARKYRPQRFQEVLGQDPIITTLKNAIQMGRLANAY----LFCGSRGTGKTTLA 56

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHR-----LSIIVEEILY 126
           ++ A+ L     S       +      + T     DVL ID         +  I E + Y
Sbjct: 57  RLFAKALNCLTPSPEHEPCNQCASCREISTGHS-LDVLEIDGASHRGIDDIRQINETVGY 115

Query: 127 PAMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
            A        ++ E             ++++          ATT    +   +  R    
Sbjct: 116 AAASGKYKIYIIDEVHMLTKEAFNALLKTLEEPPLNVKFFFATTEPHKVLPTILSRCQ-R 174

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
             LN   +E +   ++   +  G+   +EA   IA R+ G  R A  LL +V  F + A
Sbjct: 175 FNLNRIPLEKIVEKLRHITQDMGIEAQEEALHIIAKRAEGGLRDAESLLDQVLVFHDGA 233


>gi|229100809|ref|ZP_04231627.1| DNA polymerase III subunit gamma/tau [Bacillus cereus Rock3-28]
 gi|228682616|gb|EEL36675.1| DNA polymerase III subunit gamma/tau [Bacillus cereus Rock3-28]
          Length = 562

 Score = 66.3 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 69/209 (33%), Gaps = 42/209 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+  E+  GQ      L+  +       E + H  LF GP G GKTT+A+V A+ +   
Sbjct: 11  RPQKFEDVVGQKHVTKTLQNAL-----LQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCE 65

Query: 82  F------------------------RSTSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                                ++  +   ++      +  V  I
Sbjct: 66  HAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKVYII 125

Query: 112 DEIHRLSIIVEEILYPAMED--FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+H LS+     L   +E+    +  ++      +     +SR              N 
Sbjct: 126 DEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKIS---VND 182

Query: 170 LQDRFGIPIRLNFYEIEDLK-TIVQRGAK 197
           + +R    +     ++E+    IV R A+
Sbjct: 183 IVERLSTVVTNEGTQVEEEALQIVARAAE 211


>gi|118496780|ref|YP_897830.1| DNA polymerase III, gamma/tau subunits [Francisella tularensis
           subsp. novicida U112]
 gi|194324539|ref|ZP_03058311.1| DNA polymerase III, subunits gamma and tau [Francisella tularensis
           subsp. novicida FTE]
 gi|118422686|gb|ABK89076.1| DNA polymerase III, gamma/tau subunits [Francisella novicida U112]
 gi|194321374|gb|EDX18860.1| DNA polymerase III, subunits gamma and tau [Francisella tularensis
           subsp. novicida FTE]
          Length = 546

 Score = 66.3 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 45/249 (18%), Positives = 79/249 (31%), Gaps = 57/249 (22%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP++  E  GQ  A ++L   +E  K         LF G  G+GKTT+ +++A+
Sbjct: 5   ALARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAY----LFTGTRGVGKTTIGRLLAK 60

Query: 77  ELGVNF------------------------RSTSGPVIAKAGDLAALLTNLE------DR 106
            L                                        +   +L N++        
Sbjct: 61  CLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRY 120

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164
            V  IDE+H LS      L   +E+    +  ++      +     LSR   +       
Sbjct: 121 KVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQ 180

Query: 165 LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGR 224
                              +I+D   I+        +   +++   IA  ++G+ R A  
Sbjct: 181 A------------------DIKDQLKII---LAKENINSDEQSLEYIAYHAKGSLRDALS 219

Query: 225 LLRRVRDFA 233
           LL +   F 
Sbjct: 220 LLDQAISFC 228


>gi|30260213|ref|NP_842590.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis str.
           Ames]
 gi|47525274|ref|YP_016623.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49183057|ref|YP_026309.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis str.
           Sterne]
 gi|65317485|ref|ZP_00390444.1| COG2812: DNA polymerase III, gamma/tau subunits [Bacillus anthracis
           str. A2012]
 gi|165873240|ref|ZP_02217851.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str.
           A0488]
 gi|167635052|ref|ZP_02393369.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str.
           A0442]
 gi|167642050|ref|ZP_02400277.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str.
           A0193]
 gi|170688902|ref|ZP_02880104.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str.
           A0465]
 gi|170707528|ref|ZP_02897981.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str.
           A0389]
 gi|177655681|ref|ZP_02937006.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str.
           A0174]
 gi|190569330|ref|ZP_03022222.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis
           Tsiankovskii-I]
 gi|227812696|ref|YP_002812705.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str.
           CDC 684]
 gi|229604772|ref|YP_002864674.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str.
           A0248]
 gi|254686611|ref|ZP_05150470.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis str.
           CNEVA-9066]
 gi|254737001|ref|ZP_05194706.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis str.
           Western North America USA6153]
 gi|254744199|ref|ZP_05201880.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis str.
           Kruger B]
 gi|254751190|ref|ZP_05203229.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis str.
           Vollum]
 gi|254761660|ref|ZP_05213678.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis str.
           Australia 94]
 gi|30253534|gb|AAP24076.1| DNA polymerase III, gamma and tau subunit [Bacillus anthracis str.
           Ames]
 gi|47500422|gb|AAT29098.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49176984|gb|AAT52360.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str.
           Sterne]
 gi|164711038|gb|EDR16604.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str.
           A0488]
 gi|167509984|gb|EDR85403.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str.
           A0193]
 gi|167529526|gb|EDR92276.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str.
           A0442]
 gi|170127524|gb|EDS96398.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str.
           A0389]
 gi|170667126|gb|EDT17887.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str.
           A0465]
 gi|172080021|gb|EDT65121.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str.
           A0174]
 gi|190559552|gb|EDV13545.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis
           Tsiankovskii-I]
 gi|227004387|gb|ACP14130.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str.
           CDC 684]
 gi|229269180|gb|ACQ50817.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str.
           A0248]
          Length = 562

 Score = 66.3 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 69/209 (33%), Gaps = 42/209 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+  E+  GQ      L+  +       E + H  LF GP G GKTT+A+V A+ +   
Sbjct: 11  RPQKFEDVVGQKHVTKTLQNAL-----LQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCE 65

Query: 82  F------------------------RSTSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                                ++  +   ++      +  V  I
Sbjct: 66  HAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKVYII 125

Query: 112 DEIHRLSIIVEEILYPAMED--FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+H LS+     L   +E+    +  ++      +     +SR              N 
Sbjct: 126 DEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKIS---VND 182

Query: 170 LQDRFGIPIRLNFYEIEDLK-TIVQRGAK 197
           + +R    +     ++ED    IV R A+
Sbjct: 183 IVERLSTVVTNEGTQVEDEALQIVARAAE 211


>gi|145546005|ref|XP_001458686.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124426507|emb|CAK91289.1| unnamed protein product [Paramecium tetraurelia]
          Length = 647

 Score = 66.3 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 56/276 (20%), Positives = 101/276 (36%), Gaps = 33/276 (11%)

Query: 2   MDREGLLSRNVS--QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH--- 56
           MDR   + RN    QE+ +I    P    +  G  E    L+  +E  K   +  D    
Sbjct: 193 MDRFYNILRNNQSVQEERNI----PTRFNDVLGIDEFKEELEEIVEFLKNPKKYTDSGAK 248

Query: 57  ----VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA------KAGDLAALLTNLEDR 106
               +L VGPPG GKT LA+ +A E G  F   SG           A  +  +      +
Sbjct: 249 LPKGILLVGPPGTGKTLLARALAGEAGCAFFYKSGSEFDEMFVGVGASRVREIFKAARAK 308

Query: 107 --DVLFIDEIHRL--SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTR 162
              ++FIDEI  +      ++   P      ++ ++ E    +  +       +I AT  
Sbjct: 309 APSIIFIDEIDSIGGRRRAQD---PGYSRDTINQILTEMDGFKQTES----VIVIGATNF 361

Query: 163 VGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPR 220
             +L   L+   RF   I +   +++  + I                   +A ++ G   
Sbjct: 362 EQVLDPALKRPGRFDKMIHVPLPDVKGREQIFSYYLNKIKFEEKKVLPSNLARQTSGFSG 421

Query: 221 IAGRLLRRVRDFAEVAHAK-TITREIADAALLRLAI 255
              + +  V     + + +   T E  + A+ R+++
Sbjct: 422 ADIQNMVNVAILNAIKYDRQIATTEDFEFAIDRISM 457


>gi|84500405|ref|ZP_00998654.1| DNA polymerase III subunits gamma and tau [Oceanicola batsensis
           HTCC2597]
 gi|84391358|gb|EAQ03690.1| DNA polymerase III subunits gamma and tau [Oceanicola batsensis
           HTCC2597]
          Length = 581

 Score = 66.3 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 52/260 (20%), Positives = 87/260 (33%), Gaps = 26/260 (10%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           +S +           RP T  +  GQ      L+    A +         +  G  G GK
Sbjct: 1   MSESKPAYQVLARKYRPETFADLVGQDAMVRTLRNAFAADRIAQA----FIMTGIRGTGK 56

Query: 68  TTLAQVVARELGV-NFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEI 124
           TT A+++A+ +         GP     G     +  +E R  DV+ +D     S+     
Sbjct: 57  TTTARIIAKGMNCIGPDGQGGPTTDPCGKCEHCVAIMEGRHVDVMEMDAASNTSVNDIRE 116

Query: 125 L-----YPAMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           +     Y A        ++ E             ++++        I ATT +  +   +
Sbjct: 117 IIDSVHYRAASARYKIYIIDEVHMLSTSAFNALLKTLEEPPEHVKFIFATTEIRKVPVTV 176

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
             R      L   E E +  +++  A   G  + D+A   I   + G+ R A  LL    
Sbjct: 177 LSRCQ-RFDLRRIEPEVMIDLLREIADREGAEIADDALALITRAAEGSARDATSLL---- 231

Query: 231 DFAEVAHAKTITREIADAAL 250
           D A    A   T +   A L
Sbjct: 232 DQAISHGAGETTADQVRAML 251


>gi|254283726|ref|ZP_04958694.1| DNA polymerase III, gamma and tau subunit [gamma proteobacterium
           NOR51-B]
 gi|219679929|gb|EED36278.1| DNA polymerase III, gamma and tau subunit [gamma proteobacterium
           NOR51-B]
          Length = 672

 Score = 66.3 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 53/270 (19%), Positives = 99/270 (36%), Gaps = 28/270 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP   +E  GQ      L+  + A     + L H  LF G  G+GKTT+A+++A+ L  +
Sbjct: 94  RPGNFQEMVGQQHV---LRALVNA--LDNDRLHHAYLFTGTRGVGKTTVARILAKCLNCD 148

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIV-----EEILYPAMEDFQL 134
              +S P     G   + L   E R  D+L +D   R  +       E +LY        
Sbjct: 149 QGVSSTP----CGTCDSCLEIAEGRSVDLLEVDAASRTKVEDTRELLENVLYAPTRSRFK 204

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             ++ E             ++++        + ATT    L   +  R  +   L     
Sbjct: 205 IYLIDEVHMLSGHSFNALLKTLEEPPPHAKFLLATTDPQKLPATVLSRC-LQFNLKNMVP 263

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           E++   + +  +   +A  + +   +A  + G+ R A  L  +   F +   A++  R +
Sbjct: 264 EEIVAHLGKVLEEESVAFDNGSLALLARAAEGSMRDALSLTDQAIGFGDGGLAESDVRAM 323

Query: 246 ADAALLRLAIDKM-GFDQLDLRYLTMIARN 274
                    +D +      D + L  +   
Sbjct: 324 LGTVDRARVLDVLDAILDNDPKTLLAVIEQ 353


>gi|254166710|ref|ZP_04873564.1| ATPase, AAA family protein [Aciduliprofundum boonei T469]
 gi|289596184|ref|YP_003482880.1| AAA ATPase central domain protein [Aciduliprofundum boonei T469]
 gi|197624320|gb|EDY36881.1| ATPase, AAA family protein [Aciduliprofundum boonei T469]
 gi|289533971|gb|ADD08318.1| AAA ATPase central domain protein [Aciduliprofundum boonei T469]
          Length = 437

 Score = 66.3 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 48/253 (18%), Positives = 87/253 (34%), Gaps = 36/253 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+ L +  G  +A + +  + E  +A   +   ++ VG PG GKTT A+ +A 
Sbjct: 4   PWVEKYRPKRLRDIVGNTQAINEILRWAEEWEAGKPSYKALILVGKPGCGKTTTARALAN 63

Query: 77  ELGVNFRSTSGPVIAKAGDLAALL-----------------TNLEDRDVLFIDEIHRLSI 119
           E+G      +   +     +  +                  T    R ++  DE      
Sbjct: 64  EMGWGVIELNASDVRNEEKIKQIALRGAIYETFTDDGKFISTRKGGRKLIIFDEADN--- 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIA--ATTRVGLLTNPLQDRFGIP 177
                LY  ++D       G+     ++K +     LI     +  G     +       
Sbjct: 121 -----LYEGVKDGDRG---GKKAIVETIKASKQPIILIGNDYYSITGGTWGKVLKSVAKV 172

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
           ++        +  +++R     G+   DE    IA +S G  R A      + D   +A 
Sbjct: 173 VKFRAVNRAQIVKVLRRICAAEGIKCQDEVLKYIAGKSGGDLRAA------INDLQAIAE 226

Query: 238 AKTITREIADAAL 250
            K +  E   AAL
Sbjct: 227 GKKVVTEDDVAAL 239


>gi|196036412|ref|ZP_03103809.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus W]
 gi|228912761|ref|ZP_04076410.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|254724164|ref|ZP_05185949.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis str.
           A1055]
 gi|195991042|gb|EDX55013.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus W]
 gi|228846888|gb|EEM91891.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 562

 Score = 66.3 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 69/209 (33%), Gaps = 42/209 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+  E+  GQ      L+  +       E + H  LF GP G GKTT+A+V A+ +   
Sbjct: 11  RPQKFEDVVGQKHVTKTLQNAL-----LQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCE 65

Query: 82  F------------------------RSTSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                                ++  +   ++      +  V  I
Sbjct: 66  HAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKVYII 125

Query: 112 DEIHRLSIIVEEILYPAMED--FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+H LS+     L   +E+    +  ++      +     +SR              N 
Sbjct: 126 DEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKIS---VND 182

Query: 170 LQDRFGIPIRLNFYEIEDLK-TIVQRGAK 197
           + +R    +     ++ED    IV R A+
Sbjct: 183 IVERLSTVVTNEGTQVEDEALQIVARAAE 211


>gi|15678010|ref|NP_274455.1| DNA polymerase III subunits gamma and tau [Neisseria meningitidis
           MC58]
 gi|66731921|gb|AAY52154.1| DNA polymerase III, subunits gamma and tau [Neisseria meningitidis
           MC58]
 gi|325199941|gb|ADY95396.1| DNA polymerase III, subunits gamma and tau [Neisseria meningitidis
           H44/76]
          Length = 704

 Score = 66.3 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 50/303 (16%), Positives = 90/303 (29%), Gaps = 63/303 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T  +  GQ      L+  ++  +     L H  L  G  G+GKTT+A+++A+ L   
Sbjct: 11  RPKTFADLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCE 65

Query: 82  FRS------------------------TSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                                ++  +L N +         V  I
Sbjct: 66  NAQHGEPCGVCESCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYII 125

Query: 112 DEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+H LS      +   +E+    +  ++      +     LSR                
Sbjct: 126 DEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNM------- 178

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
                           + +   +        +A    A   +   + G+ R A  LL + 
Sbjct: 179 --------------TAQQVADHLAHVLDSEKIAYEPAALQLLGRAAAGSMRDALSLLDQA 224

Query: 230 RDFAEVAHAKTITREIADAALLRLAIDKM-GFDQLDLRYLTMIARNFGGGPVGIETISAG 288
                   A+   R++  A   +   + + G    D   LT  A+      VG +     
Sbjct: 225 IALGSGKVAENDVRQMIGAVDKQYLYELLTGIINQDGAALTAKAQEMAACAVGFDN---A 281

Query: 289 LSE 291
           L E
Sbjct: 282 LGE 284


>gi|28377566|ref|NP_784458.1| DNA-directed DNA polymerase III, gamma/tau subunit [Lactobacillus
           plantarum WCFS1]
 gi|28270398|emb|CAD63301.1| DNA-directed DNA polymerase III, gamma/tau subunit [Lactobacillus
           plantarum WCFS1]
          Length = 565

 Score = 66.3 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 78/226 (34%), Gaps = 21/226 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  +E  GQ      LK  I       +     LF GP G GKT+ A++ A+ +  + 
Sbjct: 10  RPQRFDEIVGQQMITQTLKNAI----MTHQTSHAYLFTGPRGTGKTSAAKIFAKAINCHH 65

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P      +    +T  +  DV+ ID      +  +  I ++  Y   +      +
Sbjct: 66  LVDGEPCNEC--ETCTAITKGQLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQADYKVYI 123

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++   +    I ATT    +   +  R            +  
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPLTIISRTQRFDFRRITAKDSY 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
             +V        +   ++A   IA  + G  R A  +L +V  F +
Sbjct: 184 DRMV-YILNEKDVTYDEKALRVIAAAAEGGMRDALSILDQVISFGD 228


>gi|256027041|ref|ZP_05440875.1| DNA polymerase III subunits gamma and tau [Fusobacterium sp. D11]
 gi|289765024|ref|ZP_06524402.1| DNA polymerase III subunit gamma/tau [Fusobacterium sp. D11]
 gi|289716579|gb|EFD80591.1| DNA polymerase III subunit gamma/tau [Fusobacterium sp. D11]
          Length = 482

 Score = 66.3 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 101/242 (41%), Gaps = 22/242 (9%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVAREL 78
              RP +  E +G+ E   +LK+ ++      +++ H  LF GP G+GKTT+A+++A+ +
Sbjct: 7   RKYRPSSFSEVSGENEIVKSLKLSLK-----NKSMAHAYLFSGPRGVGKTTIARLIAKGV 61

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQ 133
                  +G    +  +  A+       D++ ID      I  +  + E+I Y  +E  +
Sbjct: 62  NCLNLKENGEPCNECKNCKAINEG-RFSDLIEIDAASNRSIDEIRSLKEKINYQPVEGLK 120

Query: 134 LDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
              ++ E             ++++   +    I ATT +  +   +  R          +
Sbjct: 121 KVYIIDEAHMLTKEAFNALLKTLEEPPAHVIFILATTELEKILPTIISRCQ-RYDFKPLD 179

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +E++K+ ++   K   L++TD+    I   S G+ R +  +L R+   A          E
Sbjct: 180 LEEMKSGLEHILKEENLSMTDDVYPVIYENSSGSMRDSISILERLIVTANGKEINLKIAE 239

Query: 245 IA 246
             
Sbjct: 240 DT 241


>gi|261345764|ref|ZP_05973408.1| DNA polymerase III subunit tau [Providencia rustigianii DSM 4541]
 gi|282566253|gb|EFB71788.1| DNA polymerase III subunit tau [Providencia rustigianii DSM 4541]
          Length = 648

 Score = 66.3 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 87/245 (35%), Gaps = 31/245 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+   +  GQ    + L     A     + L H  LF G  G+GKTT+A++ A+ L   
Sbjct: 11  RPQKFSDVVGQQHVLTAL-----ANGLEHQRLHHAYLFSGTRGVGKTTIARLFAKGLNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILY------PAMEDFQ 133
              T+ P     G  A  L   + R  D++ ID   R  +     L       PA   F+
Sbjct: 66  NGITATP----CGKCANCLEIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121

Query: 134 LDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           + L+               ++++        + ATT    L   +  R  +   L   ++
Sbjct: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDV 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           + +   ++       +         IA  + G+ R A  L     D A      T+T EI
Sbjct: 181 DQISEQLELILNAENIEHDTRGRQLIARAADGSLRDALSL----TDQAIAMGQGTVTAEI 236

Query: 246 ADAAL 250
               L
Sbjct: 237 VSQML 241


>gi|213586555|ref|ZP_03368381.1| DNA polymerase III subunits gamma and tau [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
          Length = 233

 Score = 66.3 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 79/217 (36%), Gaps = 21/217 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++   +    + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           +  ++       +A    A   ++  + G+ R A  L
Sbjct: 184 RHQLEHILNEEHIAHEPRALQLLSRAADGSLRDALSL 220


>gi|115398522|ref|XP_001214850.1| activator 1 37 kDa subunit [Aspergillus terreus NIH2624]
 gi|114191733|gb|EAU33433.1| activator 1 37 kDa subunit [Aspergillus terreus NIH2624]
          Length = 352

 Score = 66.3 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 78/227 (34%), Gaps = 38/227 (16%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   +   RP  L++  G  E    LK+      A+   + HV+  G PG+GKTT    +
Sbjct: 27  ELPWVEKYRPVFLDDVVGNTETIERLKII-----AKDGNMPHVIISGMPGIGKTTSILCL 81

Query: 75  AR------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIHRLSII 120
           AR            EL  +       V  +    A     L      ++ +DE   ++  
Sbjct: 82  ARQLLGDAYKDAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRHKIIILDEADSMTPG 141

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            ++ L   ME +                   +RF    A  +   +  PLQ R  I    
Sbjct: 142 AQQALRRTMEIYSST----------------TRFAF--ACNQSNKIIEPLQSRCAILRYA 183

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
              + + +K  +++      +  T++    +   + G  R A   L+
Sbjct: 184 RLTDGQVVKR-LKQVCDAEKVEHTEDGLAALVFSAEGDMRQAINNLQ 229


>gi|33152827|ref|NP_874180.1| DNA polymerase III subunits gamma and tau [Haemophilus ducreyi
           35000HP]
 gi|33149052|gb|AAP96569.1| DNA polymerase III subunits gamma and tau [Haemophilus ducreyi
           35000HP]
          Length = 687

 Score = 66.3 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 54/266 (20%), Positives = 84/266 (31%), Gaps = 59/266 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+   E  GQ    S L+  +     R + L H  LF G  G+GKT++A++ A+ L   
Sbjct: 11  RPQRFSEVIGQQHVLSALENGL-----RQDKLHHAYLFSGTRGVGKTSIARLFAKGLNCE 65

Query: 82  FRST------------------------SGPVIAKAGDLAALLTNLEDRD------VLFI 111
              T                              K  D   LL N++ +       V  I
Sbjct: 66  TSITATPCGKCENCKAIEEGRFIDLIEIDAASRTKVEDTRELLDNVQYKPTVGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSRHSFNALLKTLEE------------------PPEYVKFLLATTDPQKLPVTIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L       L   ++       +     A  ++A  ++G+ R +  L     D
Sbjct: 168 SRC-MQFHLRALTPTQLSQHLEFILTQENIPYELAAIEKLAKAAQGSIRDSLSL----TD 222

Query: 232 FAEVAHAKTITREIADAALLRLAIDK 257
            A       IT  I    L  +  D+
Sbjct: 223 QAIAVSNTNITLPIVSEMLGLIDDDQ 248


>gi|237743482|ref|ZP_04573963.1| DNA polymerase III subunit gamma/tau [Fusobacterium sp. 7_1]
 gi|229433261|gb|EEO43473.1| DNA polymerase III subunit gamma/tau [Fusobacterium sp. 7_1]
          Length = 482

 Score = 65.9 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 100/242 (41%), Gaps = 22/242 (9%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVAREL 78
              RP +  E +G+ E   +LK+ ++      +++ H  LF GP G+GKTT+A+++A+ +
Sbjct: 7   RKYRPSSFSEVSGENEIVKSLKLSLK-----NKSMAHAYLFSGPRGVGKTTIARLIAKGV 61

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQ 133
                  +G    +  +  A+       D++ ID      I  +  + E+I Y  +E  +
Sbjct: 62  NCLNLKENGEPCNECKNCKAINEG-RFSDLIEIDAASNRSIDEIRSLKEKINYQPVEGLK 120

Query: 134 LDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
              ++ E             ++++   +    I ATT +  +   +  R          +
Sbjct: 121 KVYIIDEAHMLTKEAFNALLKTLEEPPAHVIFILATTELEKILPTIISRCQ-RYDFKPLD 179

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +E++K  ++   K   L++TD+    I   S G+ R +  +L R+   A          E
Sbjct: 180 LEEMKAGLEHILKEENLSMTDDVYPVIYENSSGSMRDSISILERLIVTANGKEINLKIAE 239

Query: 245 IA 246
             
Sbjct: 240 DT 241


>gi|159476624|ref|XP_001696411.1| DNA replication factor C complex subunit 4 [Chlamydomonas
           reinhardtii]
 gi|158282636|gb|EDP08388.1| DNA replication factor C complex subunit 4 [Chlamydomonas
           reinhardtii]
 gi|294845967|gb|ADF43126.1| RFC4p [Chlamydomonas reinhardtii]
          Length = 332

 Score = 65.9 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 76/234 (32%), Gaps = 44/234 (18%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+ + E   Q E  + L   +E A      L H+LF GPPG GKT+ A  +AR
Sbjct: 5   PWVEKYRPKNVSEVAYQEEVVNTLTRALETA-----NLPHLLFYGPPGTGKTSTALAIAR 59

Query: 77  -------------ELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHR 116
                        EL  +       V  K    AA                +L +DE   
Sbjct: 60  QLYGPELMKSRVLELNASDERGIHVVREKVKAFAATAVGAPVPGYPCPPYKLLILDEADS 119

Query: 117 LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
           ++   +  L   ME +                  ++RF  I     V  +  PL  R   
Sbjct: 120 MTQDAQNALRRTMETYS----------------RVTRFVFIC--NYVSRIIEPLASRCA- 160

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
             R    +   +   ++   +   + +   A   ++  S G  R A   L+   
Sbjct: 161 KFRFKPLQPAIMAGRIEHICERESVTLGPGALDTLSAVSGGDLRRAINTLQSAA 214


>gi|163938031|ref|YP_001642915.1| DNA polymerase III subunits gamma and tau [Bacillus
           weihenstephanensis KBAB4]
 gi|163860228|gb|ABY41287.1| DNA polymerase III, subunits gamma and tau [Bacillus
           weihenstephanensis KBAB4]
          Length = 562

 Score = 65.9 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 68/208 (32%), Gaps = 40/208 (19%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  E+  GQ      L    + A  + +A    LF GP G GKTT+A+V A+ +    
Sbjct: 11  RPQKFEDVVGQKHVTKTL----QNALLQEKASHAYLFSGPRGTGKTTIAKVFAKAINCEH 66

Query: 83  ------------------------RSTSGPVIAKAGDLAALLTNLE------DRDVLFID 112
                                               ++  +   ++         V  ID
Sbjct: 67  APVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVGYKVYIID 126

Query: 113 EIHRLSIIVEEILYPAMED--FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           E+H LS+     L   +E+    +  ++      +     +SR              N +
Sbjct: 127 EVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPATIISRCQRFEFRKIS---VNDI 183

Query: 171 QDRFGIPIRLNFYEIEDLK-TIVQRGAK 197
            +R    +     ++ED    IV R A+
Sbjct: 184 VERLSTVVTNEGTQVEDEALQIVARAAE 211


>gi|327311518|ref|YP_004338415.1| replication factor C large subunit [Thermoproteus uzoniensis
           768-20]
 gi|326947997|gb|AEA13103.1| replication factor C large subunit [Thermoproteus uzoniensis
           768-20]
          Length = 422

 Score = 65.9 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 50/235 (21%), Positives = 86/235 (36%), Gaps = 41/235 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEA------------AKARAEALD---HVLFVG 61
             +   RPRT +E   Q EA   L  ++ A            AK + + +     VL  G
Sbjct: 3   PWVEKYRPRTFKEVVDQEEAKYALASWVCARFRAPEQFCKAWAKNKDKKISEAKAVLLAG 62

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAAL---------LTNLEDRDVLFID 112
           PPG+GKTTL   +A E+       +   +  A  +  +         L     R +LF D
Sbjct: 63  PPGIGKTTLVHALANEINYELVELNASDVRTAERIREVVGRGLREGSLFGYAGRLILF-D 121

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+  L+           +   L+ ++    +AR          ++ A         PL+D
Sbjct: 122 EVDGLNPKE--------DLGGLNSIIDLIETARVP-------IVMTANNPWDQRLRPLRD 166

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
              +       E +D+  +++R      +   ++A   +A  S G  R A   L+
Sbjct: 167 VSLVVSLRRLAE-DDVVEVLRRICDSEKIKCEEDALRALARSSDGDLRAAINDLQ 220


>gi|306829660|ref|ZP_07462850.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus mitis
           ATCC 6249]
 gi|304428746|gb|EFM31836.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus mitis
           ATCC 6249]
          Length = 552

 Score = 65.9 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 53/296 (17%), Positives = 88/296 (29%), Gaps = 58/296 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     R +T  +  GQ      LK  +E      E + H  LF GP G GKT++A++ A
Sbjct: 4   ALYRKYRSQTFSQLVGQEVVAKTLKQAVE-----QEKISHAYLFSGPRGTGKTSVAKIFA 58

Query: 76  RELGVNFRS------------------------TSGPVIAKAGDLAALLTN------LED 105
           + +    +                                   ++  +         L  
Sbjct: 59  KAMNCPNQVDGEPCNSCYICQAVTEGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLAR 118

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
             V  IDE+H LS      L   +E+                         I ATT +  
Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPT------------------QNVVFILATTELHK 160

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           +   +  R       +    +    I     +   ++   +A   IA R+ G  R A  +
Sbjct: 161 IPATILSRVQRFEFKSIRTQDITAHI-HHILEKENISSEPDAIEIIARRAEGGMRDALSI 219

Query: 226 LRRVRDFAEVAHAKTITREIADAALLRLAIDKM--GFDQLDL-RYLTMIARNFGGG 278
           L +     +     T   E     +   A+D       Q D+ + L  +   F  G
Sbjct: 220 LDQALSLTQGNALTTAISEEITGTISLSALDDYVAALSQQDVPKALDSLNLLFENG 275


>gi|224072550|ref|XP_002188696.1| PREDICTED: similar to replication factor C 5 [Taeniopygia guttata]
          Length = 329

 Score = 65.9 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 76/234 (32%), Gaps = 38/234 (16%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           ++   S     +   RP+ L E     +  S ++ FI       + L H+L  GPPG GK
Sbjct: 1   MAPAGSANLPWVEKYRPQALSELVFHRDILSTVQRFIS-----EDRLPHLLLYGPPGTGK 55

Query: 68  TTLAQVVA------RELGVNFRSTSGPVIAKAGDLAA-LLTNLEDRDVL-------FIDE 113
           T+     A      RE        +         +   +L+    R +         +DE
Sbjct: 56  TSTILACARQLYREREFSSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDE 115

Query: 114 IHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
              ++   +  L   +E F       E      +   LS+                LQ R
Sbjct: 116 ADAMTQDAQNALRRVIEKF------TENTRFCLICNYLSKIIP------------ALQSR 157

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
                R      E +   +Q   +  G+ VT++    +   S G  R A  +L+
Sbjct: 158 C-TRFRFGPLTPELMVPRLQHVIQEEGVDVTEDGMKALVTLSSGDMRRALNILQ 210


>gi|195426391|ref|XP_002061318.1| GK20855 [Drosophila willistoni]
 gi|194157403|gb|EDW72304.1| GK20855 [Drosophila willistoni]
          Length = 753

 Score = 65.9 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 58/271 (21%), Positives = 97/271 (35%), Gaps = 24/271 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  EA   LK  +E  K          +    VL VGPPG GKT LA+ VA E 
Sbjct: 315 TFDDVKGCDEAKQELKEVVEFLKNPDKFSNLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 374

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F   +GP          A  +  L    + R   V+FIDEI  +       +     
Sbjct: 375 NVPFFHAAGPEFDEVLVGQGARRVRDLFKAAKARAPCVIFIDEIDSVGAKRTNSVLHPYA 434

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
           +  ++ ++ E               ++ AT R   L   L    RF + + ++  +    
Sbjct: 435 NQTINQLLSEMDGFHQNAG----VIVLGATNRRDDLDQALLRPGRFDVEVMVSTPDFTGR 490

Query: 189 KTIVQ-RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           K I+    AK+    +  +        S  T      ++ +    A +  A T++ +  +
Sbjct: 491 KEILSLYLAKILHDEIDLDMLARGT--SGFTGADLENMINQAALRAAIDGADTVSMKHLE 548

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
            A  ++ +      +L       I     GG
Sbjct: 549 TARDKVLMGPERKARLPDEEANTITAYHEGG 579


>gi|74150977|dbj|BAE27622.1| unnamed protein product [Mus musculus]
          Length = 370

 Score = 65.9 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 76/234 (32%), Gaps = 45/234 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+ ++E   Q E  + L+  +E A      L ++LF GPPG GKT+     AR
Sbjct: 39  PWVEKYRPKCVDEVAFQDEVVAVLRKSLEGAD-----LPNLLFYGPPGTGKTSTILAAAR 93

Query: 77  -------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD--------VLFIDEIH 115
                        EL  +       V  K  + A L  +    D        ++ +DE  
Sbjct: 94  ELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEAD 153

Query: 116 RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
            ++   +  L   ME                     +RF        V  +  PL  R  
Sbjct: 154 SMTSAAQAALRRTMEKESKT----------------TRF--CLICNYVSRIIEPLTSRCS 195

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
              R      +  +  +   A+   + + +E    +   S G  R A   L+  
Sbjct: 196 -KFRFKPLSDKIQQERLLDIAEKENVKIGNEEIAYLVKISEGDLRKAITFLQSA 248


>gi|319896923|ref|YP_004135118.1| DNA polymerase iii/DNA elongation factor iii, tau and gamma
           subunits [Haemophilus influenzae F3031]
 gi|317432427|emb|CBY80782.1| DNA polymerase III/DNA elongation factor III, tau and gamma
           subunits [Haemophilus influenzae F3031]
          Length = 688

 Score = 65.9 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 53/282 (18%), Positives = 88/282 (31%), Gaps = 65/282 (23%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T  +  GQ    S L     A   +   L H  LF G  G+GKT++A++ A+ L   
Sbjct: 11  RPKTFADVVGQEHIISAL-----ANGLKDNRLHHAYLFSGTRGVGKTSIARLFAKGLNCV 65

Query: 82  F------------------------RSTSGPVIAKAGDLAALLTNLEDRDVL------FI 111
                                             K  D   LL N++ + V+       I
Sbjct: 66  HGVTATPCGECENCKAIEQGNFIDLIEIDAASRTKVEDTRELLDNVQYKPVVGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSRHSFNALLKTLEE------------------PPEYVKFLLATTDPQKLPVTIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L   +   +   +        +   D A  ++A  ++G+ R +  L     D
Sbjct: 168 SRC-LQFHLKALDETQISQHLAHILTQENIPFEDPALVKLAKAAQGSIRDSLSL----TD 222

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIAR 273
            A     + +T  +    L  L       D   +  L  + +
Sbjct: 223 QAIAMGDRQVTNNVVSNMLGLLD------DNYSVDILYALHQ 258


>gi|261392295|emb|CAX49821.1| DNA polymerase III tau/gamma subunits [Neisseria meningitidis 8013]
          Length = 709

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 48/303 (15%), Positives = 88/303 (29%), Gaps = 63/303 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T  +  GQ      L+  ++  +     L H  L  G  G+GKTT+A+++A+ L   
Sbjct: 11  RPKTFADLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCE 65

Query: 82  FRS------------------------TSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                                ++  +L N +         V  I
Sbjct: 66  NAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYII 125

Query: 112 DEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+H LS      +   +E+    +  ++      +     LSR                
Sbjct: 126 DEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNM------- 178

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
                           + +   +        +     A   +   + G+ R A  LL + 
Sbjct: 179 --------------TAQQVADHLAHVLDSEKITYAPPALQLLGRAAAGSMRDALSLLDQA 224

Query: 230 RDFAEVAHAKTITREIADAALLRLAIDKM-GFDQLDLRYLTMIARNFGGGPVGIETISAG 288
                   A+   R++  A   +   + + G    D   L   A+      VG +     
Sbjct: 225 IALGSGKVAENDVRQMIGAVDKQYLYELLTGIINQDGAALLAKAQEMAACAVGFDN---A 281

Query: 289 LSE 291
           L E
Sbjct: 282 LGE 284


>gi|291286041|ref|YP_003502857.1| DNA polymerase III, subunits gamma and tau [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290883201|gb|ADD66901.1| DNA polymerase III, subunits gamma and tau [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 534

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 69/217 (31%), Gaps = 39/217 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A    LRP+  +E +GQ    + LK  IE  +         LF GP G+GKT+ A+++A+
Sbjct: 5   ALARKLRPQNFDELSGQEFVVTTLKNSIEMGRVAHAY----LFTGPRGVGKTSAARILAK 60

Query: 77  ELGV------------------------NFRSTSGPVIAKAGDLAALLTNLE------DR 106
            +                          +     G       ++  L   +         
Sbjct: 61  AVNCLEPVGSNPCNKCENCTEITSGTSMDVVEIDGASNRGIDEIRELREAVRFLPVKCKF 120

Query: 107 DVLFIDEIHRLSIIVEEILYPAME---DFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
            V  IDE+H L+      L   +E   D+ + ++    P  R     +SR          
Sbjct: 121 KVYIIDEVHMLTEHAFNALLKTLEEPPDYVMFILATTDPQ-RLPATIISRCQKYDFNKIP 179

Query: 164 GLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
             +         +      Y+ + L  +V+       
Sbjct: 180 FEIMYDSLA-GAMDTEGIEYDKDALNLVVRNSDGCMR 215


>gi|86605279|ref|YP_474042.1| DNA polymerase III, subunits gamma and tau [Synechococcus sp.
           JA-3-3Ab]
 gi|86553821|gb|ABC98779.1| DNA polymerase III, subunits gamma and tau [Synechococcus sp.
           JA-3-3Ab]
          Length = 692

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 80/221 (36%), Gaps = 21/221 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+   E  GQ      L   I   +         LF GP G GKT+ A+++A+ L    
Sbjct: 15  RPQRFAEVVGQGAVVQTLANAIRLGRVA----PAYLFCGPRGTGKTSSARILAKSLNCE- 69

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P   +       +T     DV+ ID      +  +  ++E   +  +       +
Sbjct: 70  -QGPTPDPCQVCSQCRAITAGSSLDVIEIDAASNTGVDNIRELIERAQFAPVNSRYKVYV 128

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++    R   + ATT    +   +  R           ++D+
Sbjct: 129 IDECHMLSNAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIVSRCQ-RFDFRRIPLDDM 187

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
              + + A   G+ +  EA   +A  ++G  R A RLL ++
Sbjct: 188 VAHLGQIAAQEGIPIAPEALHLVAQLAQGGLRDAERLLDQL 228


>gi|52842953|ref|YP_096752.1| DNA polymerase III subunits gamma and tau [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
 gi|52630064|gb|AAU28805.1| DNA polymerase III subunits gamma and tau [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
          Length = 556

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 84/229 (36%), Gaps = 23/229 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPRT  +  GQ       K  I A   +   L H  LF G  G+GKT++A+++A+ L   
Sbjct: 11  RPRTFSQLVGQEHI---NKALINALNQQ--RLHHAYLFTGTRGVGKTSVARILAKALNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLD 135
              TS P +    D    +      D++ ID   +  +     L       P    F++ 
Sbjct: 66  KGITSEPCLHC--DTCIAIEQGRYIDLIEIDGASKTRVEDTRDLLDNIQYAPTNGRFKVY 123

Query: 136 LM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           L+               ++++   S    I ATT    L   +  R  +   L     E 
Sbjct: 124 LIDEVHMLSQHSFNALLKTLEEPPSHVKFILATTDPQKLPVTVLSRC-LQFNLKHLPAEL 182

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
           +   +Q   +   L    +A   +A  +RG+ R A  LL +     E  
Sbjct: 183 INQQLQLILQEERLDFEIQALDILAQAARGSMRDALSLLDQAITSCETK 231


>gi|21226355|ref|NP_632277.1| replication factor C large subunit [Methanosarcina mazei Go1]
 gi|42559489|sp|Q8Q084|RFCL_METMA RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|20904606|gb|AAM29949.1| replication factor C subunit [Methanosarcina mazei Go1]
          Length = 610

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 97/248 (39%), Gaps = 30/248 (12%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
                RPRTL +  G  +A  +L+ + E  ++       V+  GP G+GKT+ A  +A +
Sbjct: 12  WAEKYRPRTLGDVVGNRKAVQDLRKWAEEWQSGIPEKRAVILYGPAGIGKTSSAHALAGD 71

Query: 78  LGVNFR------STSGPVIAK-AGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           +             +  VI K AG  A++ T    + ++ +DE           L+   +
Sbjct: 72  MEWEVIELNASDQRTAGVIEKIAGSAASMNTFFGGKRLIILDEADN--------LHGTAD 123

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
              +  + G       +K  L    LIA    +  LT P      + I+    +   +  
Sbjct: 124 RGGMRAISG------IIKSTLQPIILIA--NDIYGLT-PTVRNICLEIKFGSVQSRSMVP 174

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR------DFAEVAHAKTITRE 244
            +++  +  G++ + EA  +IA  + G  R A   L+         +  +++ A    +E
Sbjct: 175 ALKKVCESEGVSCSQEAVLQIAENAGGDFRSAINDLQAAANGKKALEAEDISTAGRDVKE 234

Query: 245 IADAALLR 252
               A+ +
Sbjct: 235 NIFKAMQK 242


>gi|325122590|gb|ADY82113.1| DNA polymerase III, tau and gamma subunits (DNA elongation factor
           III) [Acinetobacter calcoaceticus PHEA-2]
          Length = 685

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 51/262 (19%), Positives = 81/262 (30%), Gaps = 57/262 (21%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RPR   E  GQ          + +A  R       LF G  G+GKTT+A+++A+ L
Sbjct: 6   ARKYRPRNFNELVGQNHV----SRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCL 61

Query: 79  GVNFRSTS------------------------GPVIAKAGDLAALLTNL------EDRDV 108
                 TS                             K  D   LL N+          V
Sbjct: 62  NCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKV 121

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
             IDE+H LS      L   +E+                         + ATT    L  
Sbjct: 122 YLIDEVHMLSTHSFNALLKTLEE------------------PPEHVKFLFATTDPQKLPI 163

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            +  R  +   L    ++++   +    +   +    +A  +IA  ++G+ R A  L   
Sbjct: 164 TVISRC-LQFTLRPLAVDEITKHLGAILEKEQITADQDAIWQIAESAQGSLRDALSL--- 219

Query: 229 VRDFAEVAHAKTITREIADAAL 250
             D A      ++  +     L
Sbjct: 220 -TDQAIAYGQGSVHHQDVKEML 240


>gi|296271483|ref|YP_003654115.1| DNA polymerase III subunits gamma and tau [Thermobispora bispora
           DSM 43833]
 gi|296094270|gb|ADG90222.1| DNA polymerase III, subunits gamma and tau [Thermobispora bispora
           DSM 43833]
          Length = 729

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 76/235 (32%), Gaps = 19/235 (8%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T  E  GQ      L+  +   +         LF GP G GKT+ A+++AR
Sbjct: 4   ALYRKYRPGTFAEVKGQEHVTEPLRQALRTGRIHHAY----LFSGPRGCGKTSSARILAR 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            L      T  P       +A   T     DV+ ID      +     + E   +  +  
Sbjct: 60  SLNCEKGPTPDPCGECESCVALAPTGPGHIDVIEIDAASHGGVDDARDLRERAFFAPVSA 119

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             + V+        + ATT    +   ++ R         
Sbjct: 120 RFKIYIIDEAHMVTREGFNALLKLVEEPPPHLKFVFATTEPEKVIGTIKSR-THHYPFRL 178

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                L+ +++   +  G+     A   +     G+ R    +L ++   A+ + 
Sbjct: 179 MPPATLRQLIEEILQQEGVPYEPAALPLVVRAGAGSARDTLSILDQLLAGADESG 233


>gi|167629104|ref|YP_001679603.1| ATP-dependent lon protease [Heliobacterium modesticaldum Ice1]
 gi|167591844|gb|ABZ83592.1| ATP-dependent lon protease [Heliobacterium modesticaldum Ice1]
          Length = 658

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 62/283 (21%), Positives = 99/283 (34%), Gaps = 57/283 (20%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           + + +LRPR L E  GQ  A   +      +K  +    H+L  GPPG+GKTT A++  +
Sbjct: 167 SAMEMLRPRQLNEVVGQERAVQAI-----LSKLASPYPQHILCYGPPGVGKTTAARLAFQ 221

Query: 77  ELG----------------------VNFRSTSGPVIAKA---------GDLA-------- 97
                                     + R  + P++             DLA        
Sbjct: 222 AAKGRTVTPFPDEAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLADTGIPEPK 281

Query: 98  -ALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG-EGPSARSVKINLSR-- 153
             L++      VLFIDEI  +  ++   L   +ED ++        P   +V   + +  
Sbjct: 282 LGLVSEAHGG-VLFIDEIGEMDPMLLNKLLKVLEDKRVSFDSAYYDPLDPNVPQWIKKIF 340

Query: 154 -------FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDE 206
                  F LI ATTR     NP        I        D+K I++   +   +++   
Sbjct: 341 DEGAPADFILIGATTRSPGEINPALRSRCAEIFFEPLTPADIKDIIENAGQRLEVSLEAG 400

Query: 207 AACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            A  IA  +    R A  LL      A     +    + A +A
Sbjct: 401 VADLIAEYT-IEGRKAVNLLADAYGLALFRREEAEAAQKATSA 442


>gi|147904320|ref|NP_001084837.1| replication factor C (activator 1) 2, 40kDa [Xenopus laevis]
 gi|47124709|gb|AAH70622.1| MGC81391 protein [Xenopus laevis]
          Length = 348

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 78/230 (33%), Gaps = 38/230 (16%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           S  V+ E   +   RP  L E  G  E  S L+VF     AR   + +++  GPPG GKT
Sbjct: 24  SLAVTYELPWVEKYRPLKLNEIVGNEETVSRLEVF-----AREGNVPNIIIAGPPGTGKT 78

Query: 69  TLAQVVAR------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEI 114
           T    +AR            EL  +       V  K    A     L      ++ +DE 
Sbjct: 79  TSILCLARALLGPTMKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEA 138

Query: 115 HRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRF 174
             ++   ++ L   ME +                   +RF    A      +  P+Q R 
Sbjct: 139 DSMTDGAQQALRRTMEIYSKT----------------TRF--ALACNASDKIIEPIQSRC 180

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGR 224
            +       + + L   +    +   +  TD+    I   ++G  R A  
Sbjct: 181 AVLRYTKLTDAQVLAR-LMDVVEKEKVQCTDDGLEAIVFTAQGDMRQALN 229


>gi|260554689|ref|ZP_05826910.1| DNA polymerase III [Acinetobacter baumannii ATCC 19606]
 gi|260411231|gb|EEX04528.1| DNA polymerase III [Acinetobacter baumannii ATCC 19606]
          Length = 702

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 83/257 (32%), Gaps = 53/257 (20%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RPR   E  GQ          + +A  R       LF G  G+GKTT+A+++A+ L
Sbjct: 6   ARKYRPRNFNELVGQNHV----SRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCL 61

Query: 79  GVNFRSTS------------------------GPVIAKAGDLAALLTNL------EDRDV 108
                 TS                             K  D   LL N+          V
Sbjct: 62  NCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKV 121

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
             IDE+H LS      L   +E+                         + ATT    L  
Sbjct: 122 YLIDEVHMLSTHSFNALLKTLEE------------------PPEHVKFLFATTDPQKLPI 163

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            +  R  +   L    ++++   +    +   +A   +A  +IA  ++G+ R A  L  +
Sbjct: 164 TVISRC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALSLTDQ 222

Query: 229 VRDFAEVAHAKTITREI 245
              + + A      +E+
Sbjct: 223 AIAYGQGAVHHQDVKEM 239


>gi|39938793|ref|NP_950559.1| ATP-dependent Zn protease [Onion yellows phytoplasma OY-M]
 gi|39721902|dbj|BAD04392.1| ATP-dependent Zn protease [Onion yellows phytoplasma OY-M]
          Length = 422

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 52/244 (21%), Positives = 93/244 (38%), Gaps = 19/244 (7%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE-------ALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  E    ++  I+  K   +           VL  GPPG GKT LA+ +A E+
Sbjct: 178 TFADVAGLEEEKKEIQELIDFLKHPQKYHKMGFKIPKGVLLEGPPGTGKTLLAKALANEV 237

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            + F + SG           A  +  L    +     ++FIDEI  L    +      +E
Sbjct: 238 KIPFYAVSGSEFVEVYVGVGASRIRDLFQKAKRTTPCIIFIDEIDALGAKRKNN--SIIE 295

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
             + D  + +          LS+  +IAAT R+ +L   L    RF   I++N   ++  
Sbjct: 296 SREHDQSLNQLLLEMDGFFKLSQIIIIAATNRIDMLDPALIRPGRFDRKIKINLPNLKAR 355

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           + I++  AK   +++  +      +    +      +L      A   +   I +   + 
Sbjct: 356 EAILKVHAKNKNISLDVDFYKLALITEGASGAQLAAILNEALILAIRNNKDQIDKHFLEQ 415

Query: 249 ALLR 252
           A+ R
Sbjct: 416 AIKR 419


>gi|302799697|ref|XP_002981607.1| hypothetical protein SELMODRAFT_114799 [Selaginella moellendorffii]
 gi|300150773|gb|EFJ17422.1| hypothetical protein SELMODRAFT_114799 [Selaginella moellendorffii]
          Length = 366

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 52/196 (26%), Positives = 86/196 (43%), Gaps = 21/196 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTN-------LEDRD 107
           +LF GPPG GKT+ A+V+A + GV        V+     G+   LL++         D  
Sbjct: 125 ILFEGPPGCGKTSCARVIASQAGVPLLYVPLEVVTSKYYGESERLLSSVFNAGNDFPDGA 184

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           ++F+DEI  L+   +  ++ A     L +++ +       K    R  +IAAT R   L 
Sbjct: 185 IVFLDEIDSLATSRDSDMHEAT-RRMLSVLLRQMDGFEQDK----RIVVIAATNRKQDLD 239

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             L  RF   I  +  +++  + IV + A+            E++  +  +  ++GR LR
Sbjct: 240 PALLSRFDASITFDLPDLQTREEIVAQYARHLSRK-------ELSSVAATSEGMSGRDLR 292

Query: 228 RVRDFAEVAHAKTITR 243
            V   AE   A  I R
Sbjct: 293 DVCQQAERKWASKILR 308


>gi|229170872|ref|ZP_04298477.1| DNA polymerase III subunit gamma/tau [Bacillus cereus MM3]
 gi|228612607|gb|EEK69824.1| DNA polymerase III subunit gamma/tau [Bacillus cereus MM3]
          Length = 562

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 69/209 (33%), Gaps = 42/209 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+  E+  GQ      L+  +       E + H  LF GP G GKTT+A+V A+ +   
Sbjct: 11  RPQKFEDVVGQKHVTKTLQNAL-----LQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCE 65

Query: 82  F------------------------RSTSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                                ++  +   ++      +  V  I
Sbjct: 66  HAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKVYII 125

Query: 112 DEIHRLSIIVEEILYPAMED--FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+H LS+     L   +E+    +  ++      +     +SR              N 
Sbjct: 126 DEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKIS---VND 182

Query: 170 LQDRFGIPIRLNFYEIEDLK-TIVQRGAK 197
           + +R    +     ++ED    IV R A+
Sbjct: 183 IVERLSTVVTNEGTQVEDEALQIVARAAE 211


>gi|118475796|ref|YP_892947.1| DNA polymerase III subunits gamma and tau [Bacillus thuringiensis
           str. Al Hakam]
 gi|196041973|ref|ZP_03109260.1| DNA polymerase III, gamma and tau subunit [Bacillus cereus
           NVH0597-99]
 gi|196047689|ref|ZP_03114893.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus
           03BB108]
 gi|225862075|ref|YP_002747453.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus
           03BB102]
 gi|229089155|ref|ZP_04220438.1| DNA polymerase III subunit gamma/tau [Bacillus cereus Rock3-42]
 gi|229182417|ref|ZP_04309670.1| DNA polymerase III subunit gamma/tau [Bacillus cereus BGSC 6E1]
 gi|118415021|gb|ABK83440.1| DNA polymerase III, tau subunit [Bacillus thuringiensis str. Al
           Hakam]
 gi|196021474|gb|EDX60177.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus
           03BB108]
 gi|196027228|gb|EDX65848.1| DNA polymerase III, gamma and tau subunit [Bacillus cereus
           NVH0597-99]
 gi|225787266|gb|ACO27483.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus
           03BB102]
 gi|228601063|gb|EEK58630.1| DNA polymerase III subunit gamma/tau [Bacillus cereus BGSC 6E1]
 gi|228694178|gb|EEL47858.1| DNA polymerase III subunit gamma/tau [Bacillus cereus Rock3-42]
          Length = 562

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 69/209 (33%), Gaps = 42/209 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+  E+  GQ      L+  +       E + H  LF GP G GKTT+A+V A+ +   
Sbjct: 11  RPQKFEDVVGQKHVTKTLQNAL-----LQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCE 65

Query: 82  F------------------------RSTSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                                ++  +   ++      +  V  I
Sbjct: 66  HAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKVYII 125

Query: 112 DEIHRLSIIVEEILYPAMED--FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+H LS+     L   +E+    +  ++      +     +SR              N 
Sbjct: 126 DEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKIS---VND 182

Query: 170 LQDRFGIPIRLNFYEIEDLK-TIVQRGAK 197
           + +R    +     ++ED    IV R A+
Sbjct: 183 IVERLSTVVTNEGTQVEDEALQIVARAAE 211


>gi|238651109|ref|YP_002916967.1| DNA polymerase III subunits gamma and tau [Rickettsia peacockii
           str. Rustic]
 gi|238625207|gb|ACR47913.1| DNA polymerase III subunits gamma and tau [Rickettsia peacockii
           str. Rustic]
          Length = 509

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 87/248 (35%), Gaps = 22/248 (8%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP    E  GQ      L   I   +         L  G  G+GKTT A+++A+ +
Sbjct: 14  ARKYRPSNFAELQGQEVLVKVLSYTILNDRLTGGY----LLTGIRGVGKTTSARIIAKAV 69

Query: 79  GVNFRSTSGPVIAKAGDLAALLT--NLEDRDVLFIDEIHRLS-----IIVEEILYPAMED 131
             +   T    I         ++  N    D++ ID   + S      I+E   Y  ++ 
Sbjct: 70  NCSALITENTTIKTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQG 129

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT V  +   +  R      L  
Sbjct: 130 KHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQ-RYDLRR 188

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
              E++  +++   K   L    EA   IA +S G+ R A  +L +    + V     I+
Sbjct: 189 LSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDAVSILDQAASMS-VKSDNIIS 247

Query: 243 REIADAAL 250
            ++ +  L
Sbjct: 248 PQVINQML 255


>gi|237741245|ref|ZP_04571726.1| DNA polymerase III subunit gamma/tau [Fusobacterium sp. 4_1_13]
 gi|229430777|gb|EEO40989.1| DNA polymerase III subunit gamma/tau [Fusobacterium sp. 4_1_13]
          Length = 484

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 50/242 (20%), Positives = 100/242 (41%), Gaps = 22/242 (9%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVAREL 78
              RP +  E +G+ E   +LK+ ++      +++ H  LF GP G+GKTT+A+++A+ L
Sbjct: 7   RKYRPSSFSEVSGENEIVKSLKLSLK-----NKSMAHAYLFSGPRGVGKTTIARLIAKGL 61

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQ 133
                  +G    +  +  A+       D++ ID      I  +  + E+I Y  +E  +
Sbjct: 62  NCLNLKENGEPCNECKNCKAINEG-RFSDLIEIDAASNRSIDEIRSLKEKINYQPVEGLK 120

Query: 134 LDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
              ++ E             ++++   +    I ATT +  +   +  R          +
Sbjct: 121 KVYIIDEAHMLTKEAFNALLKTLEEPPAHVMFILATTELEKILPTIISRCQ-RYDFKPLD 179

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +E++K  ++   K   L++TD+    I   S G+ R +  +L R+   A          E
Sbjct: 180 LEEMKAGLEHILKEENLSMTDDVYSVIYENSSGSMRDSISILERLMVTANGKEIDLKIAE 239

Query: 245 IA 246
             
Sbjct: 240 DT 241


>gi|254373626|ref|ZP_04989110.1| DNA polymerase III [Francisella novicida GA99-3548]
 gi|151571348|gb|EDN37002.1| DNA polymerase III [Francisella novicida GA99-3548]
          Length = 546

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 79/249 (31%), Gaps = 57/249 (22%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP++  E  GQ  A ++L   +E  K         LF G  G+GKTTL +++A+
Sbjct: 5   ALARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAY----LFTGTRGVGKTTLGRLLAK 60

Query: 77  ELGVNF------------------------RSTSGPVIAKAGDLAALLTNLE------DR 106
            L                                        +   +L N++        
Sbjct: 61  CLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRY 120

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164
            V  IDE+H LS      L   +E+    +  ++      +     LSR   +       
Sbjct: 121 KVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQ 180

Query: 165 LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGR 224
                              +I+D   I+        +   +++   IA  ++G+ R A  
Sbjct: 181 A------------------DIKDQLKII---LAKENINSDEQSLEYIAYHAKGSLRDALS 219

Query: 225 LLRRVRDFA 233
           LL +   F 
Sbjct: 220 LLDQAISFC 228


>gi|328951662|ref|YP_004368997.1| DNA polymerase III, subunits gamma and tau [Marinithermus
           hydrothermalis DSM 14884]
 gi|328451986|gb|AEB12887.1| DNA polymerase III, subunits gamma and tau [Marinithermus
           hydrothermalis DSM 14884]
          Length = 563

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 56/244 (22%), Positives = 89/244 (36%), Gaps = 29/244 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP T +   GQ      L+  I   +         LF GP G+GKTT A+++A  +G   
Sbjct: 9   RPVTFDAVVGQEHVKEVLQNAIRTDRLAQAY----LFSGPRGVGKTTTARLIAMSVGCQA 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSII-----VEEILYPAMEDFQLD 135
                P     G     L   + R  DVL ID     S+       E IL   ++  +  
Sbjct: 65  ----APEARPCGACENCLAVRDGRHPDVLEIDAASNNSVEDVRELRERILLAPIQSARKV 120

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             ++++        I ATT    +   +  R     R      E
Sbjct: 121 FILDEAHMMSKSAFNALLKTLEEPPPHVIFIFATTEPERMPPTILSRTQ-HFRFRRLTEE 179

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           ++   +Q+  +  GL +  EA   +A  + G  R A  +L R+           +T   A
Sbjct: 180 EIAGKLQQITRAEGLEIAPEALALVARMADGAMRDAESILDRLLAL----GKNPVTLADA 235

Query: 247 DAAL 250
           +AAL
Sbjct: 236 EAAL 239


>gi|300857562|ref|YP_003782545.1| DNA polymerase III subunit gamma and tau [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300685016|gb|ADK27938.1| DNA polymerase III gamma and tau subunit [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302205302|gb|ADL09644.1| DNA polymerase III subunits gamma and tau [Corynebacterium
           pseudotuberculosis C231]
 gi|302329856|gb|ADL20050.1| DNA polymerase III subunits gamma and tau [Corynebacterium
           pseudotuberculosis 1002]
 gi|308275542|gb|ADO25441.1| DNA polymerase III subunits gamma and tau [Corynebacterium
           pseudotuberculosis I19]
          Length = 849

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 51/263 (19%), Positives = 89/263 (33%), Gaps = 32/263 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP +  E  GQ +    L V +++ +         LF GP G GKT+ A+++AR
Sbjct: 2   ALYRKYRPASFAEVVGQEQVTQPLSVALDSGRINHAY----LFSGPRGCGKTSSARIMAR 57

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR----DVLFIDEIHRLSIIVEEILY------ 126
            L        GP     G   + ++   +     DV  +D     S+     L       
Sbjct: 58  SLNC----VEGPTSTPCGKCNSCISLAPNGPGNLDVTELDAASNNSVDDMRELRDRAMYA 113

Query: 127 PAMEDFQLDLMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
           PA   +++ ++         G     + V+        I ATT    +   ++ R     
Sbjct: 114 PAESRYRIFIIDEAHMVTTQGANALLKIVEEPPEHLIFIFATTEPEKVIGTIRSR-THHY 172

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
                  + ++ +++      G  V D     +     G+PR    +L ++     +A  
Sbjct: 173 PFRLLTPQSMRGLLENTVASEGALVEDSVYPMVIRAGGGSPRDTLSVLDQL-----LAGT 227

Query: 239 KTITREIADAALLRLAIDKMGFD 261
                    A LL  A D    D
Sbjct: 228 GPQGLNYETARLLLGATDDALID 250


>gi|301051759|ref|YP_003789970.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis CI]
 gi|300373928|gb|ADK02832.1| DNA polymerase III subunits gamma and tau [Bacillus cereus biovar
           anthracis str. CI]
          Length = 562

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 69/209 (33%), Gaps = 42/209 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+  E+  GQ      L+  +       E + H  LF GP G GKTT+A+V A+ +   
Sbjct: 11  RPQKFEDVVGQKHVTKTLQNAL-----LQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCE 65

Query: 82  F------------------------RSTSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                                ++  +   ++      +  V  I
Sbjct: 66  HAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKVYII 125

Query: 112 DEIHRLSIIVEEILYPAMED--FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+H LS+     L   +E+    +  ++      +     +SR              N 
Sbjct: 126 DEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKIS---VND 182

Query: 170 LQDRFGIPIRLNFYEIEDLK-TIVQRGAK 197
           + +R    +     ++ED    IV R A+
Sbjct: 183 IVERLSTVVTNEGTQVEDEALQIVARAAE 211


>gi|228925276|ref|ZP_04088374.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|229119685|ref|ZP_04248948.1| DNA polymerase III subunit gamma/tau [Bacillus cereus 95/8201]
 gi|228663776|gb|EEL19353.1| DNA polymerase III subunit gamma/tau [Bacillus cereus 95/8201]
 gi|228834390|gb|EEM79929.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 562

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 69/209 (33%), Gaps = 42/209 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+  E+  GQ      L+  +       E + H  LF GP G GKTT+A+V A+ +   
Sbjct: 11  RPQKFEDVVGQKHVTKTLQNAL-----LQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCE 65

Query: 82  F------------------------RSTSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                                ++  +   ++      +  V  I
Sbjct: 66  HAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKVYII 125

Query: 112 DEIHRLSIIVEEILYPAMED--FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+H LS+     L   +E+    +  ++      +     +SR              N 
Sbjct: 126 DEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKIS---VND 182

Query: 170 LQDRFGIPIRLNFYEIEDLK-TIVQRGAK 197
           + +R    +     ++ED    IV R A+
Sbjct: 183 IVERLSTVVTNEGTQVEDEALQIVARAAE 211


>gi|159477557|ref|XP_001696875.1| DNA replication factor C complex subunit 5 [Chlamydomonas
           reinhardtii]
 gi|158274787|gb|EDP00567.1| DNA replication factor C complex subunit 5 [Chlamydomonas
           reinhardtii]
          Length = 356

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 73/227 (32%), Gaps = 37/227 (16%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           ++   +   RP+ L++     E    +K            L H+L  GPPG GKT+    
Sbjct: 34  RDAPWVEKYRPKKLDDVAAHKEIIDTIKRL-----TVENRLPHLLLYGPPGTGKTSTILA 88

Query: 74  VAR------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-DVLFIDEIHRLSII 120
           VAR            EL  +     G V  +  D A+  +   ++  ++ +DE   ++  
Sbjct: 89  VARQIYGNSLANMTLELNSSDERGIGVVRQEIQDFASTRSVFSNKFKLIILDECDAMTQD 148

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            +  L   +E +                              V  +   LQ R     R 
Sbjct: 149 AQAALRRVIEKYTR------------------NARFCLICNYVSKIIPALQSRC-TKFRF 189

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
                + ++  +Q  A +  + +       +     G  R +  +L+
Sbjct: 190 APLSPQFVRERLQYVADIEKMKLGPGGLDAVVQLGSGDMRRSLNILQ 236


>gi|28950096|emb|CAD70859.1| probable REPLICATION FACTOR C (40 KDA SUBUNIT) [Neurospora crassa]
          Length = 357

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 76/227 (33%), Gaps = 38/227 (16%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   +   RP  L++  G  E    LK+      A+   + H +  G PG+GKTT    +
Sbjct: 32  ELPWVEKYRPVFLDDVVGNTETIERLKII-----AKEGNMPHFIISGMPGIGKTTSVLCL 86

Query: 75  AR-----ELGVNFRSTSGPVIAKAGDLAALLTNLEDR---------DVLFIDEIHRLSII 120
           AR              +         +   +     +          ++ +DE   ++  
Sbjct: 87  ARQLLGDAYKEAVLELNASDERGIEVVRQRIKGFAQKKVTLPPGRHKIVILDEADSMTSG 146

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            ++ L   ME +                 N +RF    A  +   +  PLQ R  I    
Sbjct: 147 AQQALRRTMEIYS----------------NTTRFAF--ACNQSNKIIEPLQSRCAILRFA 188

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
              + + +K ++Q   +   +  +D+    +   + G  R A   L+
Sbjct: 189 KLTDAQVVKRLLQ-IIEAEKVEYSDDGLAALVFSAEGDMRQAINNLQ 234


>gi|23500949|ref|NP_697076.1| DNA polymerase III subunits gamma and tau [Brucella suis 1330]
 gi|23346805|gb|AAN28991.1| DNA polymerase III, gamma and tau subunits [Brucella suis 1330]
          Length = 602

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 91/248 (36%), Gaps = 25/248 (10%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+  ++  GQ      L+   E  +         +  G  G+GKTT A+++AR L
Sbjct: 14  ARKYRPQNFDDLIGQEPMVRTLRNAFETGRIAQAW----MLTGVRGVGKTTTARILARAL 69

Query: 79  GVNFRSTSGPVI--AKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
                +   P I  +  G+    +      DV+ +D      I  +  I+E++ Y  +  
Sbjct: 70  NYKTDTVDQPTIDLSTPGEHCQAIMEGRHVDVIEMDAASHTGIDDIREIIEQVRYRPVSA 129

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT +  +   +  R      L+ 
Sbjct: 130 RYKVYIIDEVHMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKVPITVLSRCQ-RFDLHR 188

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            E   L   ++R A+   + V D +   IA    G+ R +  +     D A    A ++T
Sbjct: 189 IESGTLAQHLRRIAEAEKIEVDDASLAMIARAGEGSARDSLSIF----DQAIAHGAGSVT 244

Query: 243 REIADAAL 250
            E   + L
Sbjct: 245 AEAVRSML 252


>gi|326203226|ref|ZP_08193091.1| DNA polymerase III, subunits gamma and tau [Clostridium
           papyrosolvens DSM 2782]
 gi|325986484|gb|EGD47315.1| DNA polymerase III, subunits gamma and tau [Clostridium
           papyrosolvens DSM 2782]
          Length = 562

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 87/248 (35%), Gaps = 25/248 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP   E+   Q      +K  +++ +         LF G  G GKTT+A++ AR +    
Sbjct: 11  RPLVFEDVVEQEHVVRTIKNTVKSGRVAHAY----LFCGTRGTGKTTMAKIFARAINCLN 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P   +      +L      DV+ ID      +  +  I EE++Y   +      +
Sbjct: 67  PKDGDP-CNECEVCRGILDE-SILDVVEIDAASNNSVDNVREIREEVVYAPSQARYKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT    L   +  R              +
Sbjct: 125 IDEVHMLSSGAFNALLKTLEEPPGHVVFILATTDPHKLPATILSRCQ-RFDFKKITPAGI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              V+  A+ +G+ + D+ A  IA  + G  R A  +L    D         IT E    
Sbjct: 184 AERVKVIARASGIQLDDDGALLIARLADGALRDALSIL----DQCIAEGNNNITHENVLD 239

Query: 249 ALLRLAID 256
           A+  ++ D
Sbjct: 240 AIGIVSDD 247


>gi|229074083|ref|ZP_04207132.1| DNA polymerase III subunit gamma/tau [Bacillus cereus Rock4-18]
 gi|229094743|ref|ZP_04225751.1| DNA polymerase III subunit gamma/tau [Bacillus cereus Rock3-29]
 gi|229113697|ref|ZP_04243134.1| DNA polymerase III subunit gamma/tau [Bacillus cereus Rock1-3]
 gi|228669763|gb|EEL25168.1| DNA polymerase III subunit gamma/tau [Bacillus cereus Rock1-3]
 gi|228688681|gb|EEL42551.1| DNA polymerase III subunit gamma/tau [Bacillus cereus Rock3-29]
 gi|228709046|gb|EEL61170.1| DNA polymerase III subunit gamma/tau [Bacillus cereus Rock4-18]
          Length = 562

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 69/209 (33%), Gaps = 42/209 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+  E+  GQ      L+  +       E + H  LF GP G GKTT+A+V A+ +   
Sbjct: 11  RPQKFEDVVGQKHVTKTLQNAL-----LQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCE 65

Query: 82  F------------------------RSTSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                                ++  +   ++      +  V  I
Sbjct: 66  HAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKVYII 125

Query: 112 DEIHRLSIIVEEILYPAMED--FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+H LS+     L   +E+    +  ++      +     +SR              N 
Sbjct: 126 DEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKIS---VND 182

Query: 170 LQDRFGIPIRLNFYEIEDLK-TIVQRGAK 197
           + +R    +     ++E+    IV R A+
Sbjct: 183 IVERLSTVVTNEGTQVEEEALQIVARAAE 211


>gi|50120115|ref|YP_049282.1| DNA polymerase III subunits gamma and tau [Pectobacterium
           atrosepticum SCRI1043]
 gi|49610641|emb|CAG74086.1| DNA polymerase III subunit tau [Pectobacterium atrosepticum
           SCRI1043]
          Length = 691

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 55/281 (19%), Positives = 100/281 (35%), Gaps = 34/281 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKTT+A+++A+  G+N 
Sbjct: 11  RPQTFTQVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTTIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
                       D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  EQGVTATPCGQCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++        + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  +++  +   LA    A   +A  + G+ R A  L     D A       +T      
Sbjct: 184 RAHLEQVLQAENLASEPRALQLLARAADGSLRDALSL----TDQAIAMGQGQVTTASVSQ 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVG--IETISA 287
            L  L       D+  L  +  +A+   GG V   ++ ++A
Sbjct: 240 MLGTLD------DEQPLALIEALAKG-DGGQVMSLLDQVAA 273


>gi|310815375|ref|YP_003963339.1| DNA polymerase III, subunits gamma and tau [Ketogulonicigenium
           vulgare Y25]
 gi|308754110|gb|ADO42039.1| DNA polymerase III, subunits gamma and tau [Ketogulonicigenium
           vulgare Y25]
          Length = 583

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 65/311 (20%), Positives = 105/311 (33%), Gaps = 32/311 (10%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
            +           RP T  +  GQ      LK    A +         +  G  G GKTT
Sbjct: 2   SDPQNYRVLARKYRPETFADLVGQDAMVRTLKNAFAAGRIAQA----FIMTGIRGTGKTT 57

Query: 70  LAQVVARELGV-NFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEIL- 125
            A+++A+ L       T GP     G     +   E R  DVL +D   R  +     + 
Sbjct: 58  TARIIAKGLNCIGVDGTGGPTTEPCGKCEHCVAITEGRHVDVLEMDAASRTGVNDIREII 117

Query: 126 ----YPAMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
               Y A        ++ E             ++++   +    I ATT +  +   +  
Sbjct: 118 DSVHYRAASARYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLS 177

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R      L   E E +  ++++ A     A+TD+A   I   + G+ R A  LL    D 
Sbjct: 178 RCQ-RFDLRRIEPEVMIALLRKIADAETAAITDDALALITRAAEGSARDATSLL----DQ 232

Query: 233 AEVAHAKTITREIADAALLRLAIDKMG--FDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
           A    A +     AD     L +   G   D  D     ++  +  G    +    A  +
Sbjct: 233 AISHGAGSDVGTTADQVRGMLGLADRGRVLDLFD----MVLRGDAAGALSELSAQYADGA 288

Query: 291 EPRDAIEDLIE 301
           +P   + DL E
Sbjct: 289 DPMAVLRDLAE 299


>gi|309800115|ref|ZP_07694307.1| DNA polymerase III gamma/tau subunit [Streptococcus infantis
           SK1302]
 gi|308116256|gb|EFO53740.1| DNA polymerase III gamma/tau subunit [Streptococcus infantis
           SK1302]
          Length = 554

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 56/296 (18%), Positives = 89/296 (30%), Gaps = 58/296 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     R +T  +  GQ      LK  +E      E + H  LF GP G GKT++A++ A
Sbjct: 4   ALYRKYRSQTFSQLVGQEIVAKTLKQAVE-----QEKISHAYLFSGPRGTGKTSVAKIFA 58

Query: 76  RELGVNFR------------------------STSGPVIAKAGDLAALLTN------LED 105
           + +    +                                   ++  +         +  
Sbjct: 59  KAMNCPNQEGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIRDIRDKSTYAPSIAQ 118

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
             V  IDE+H LS      L   +E+                         I ATT +  
Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPT------------------PNVVFILATTELHK 160

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           +   +  R       +    +    I     +  G+    EA   IA R+ G  R A  +
Sbjct: 161 IPATILSRVQRFEFKSIRTQDIRDHIFH-ILEKEGIDYESEAVEIIARRAEGGMRDALSI 219

Query: 226 LRRVRDFAEVAHAKTITREIADAALLRLAIDKM--GFDQLDL-RYLTMIARNFGGG 278
           L +     + A   T   E     +   A+D       Q D+ R L  +   F  G
Sbjct: 220 LDQALSLTQDARLTTAVSEEITGTISLSALDNYVAALAQKDVTRALENLNLIFDNG 275


>gi|262372722|ref|ZP_06066001.1| DNA polymerase III [Acinetobacter junii SH205]
 gi|262312747|gb|EEY93832.1| DNA polymerase III [Acinetobacter junii SH205]
          Length = 673

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 82/257 (31%), Gaps = 53/257 (20%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RPR   E  GQ          + +A  R       LF G  G+GKTT+A+++A+ L
Sbjct: 6   ARKYRPRNFNELVGQNHV----SRALTSALERGRLHHAYLFTGTRGVGKTTIARILAKCL 61

Query: 79  GVNFRSTS------------------------GPVIAKAGDLAALLTNL------EDRDV 108
                 TS                             K  D   LL N+          V
Sbjct: 62  NCETGVTSTPCEVCATCRAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKV 121

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
             IDE+H LS      L   +E+                         + ATT    L  
Sbjct: 122 YLIDEVHMLSTHSFNALLKTLEE------------------PPEHVKFLFATTDPQKLPI 163

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            +  R  +   L    ++++ T +        +    +A  +IA  ++G+ R A  L  +
Sbjct: 164 TVISRC-LQFTLRPLAVDEITTHLTTILDKESINADRDAIWQIAESAQGSLRDALSLTDQ 222

Query: 229 VRDFAEVAHAKTITREI 245
              + + A      +E+
Sbjct: 223 AIAYGQGAVHHQDVKEM 239


>gi|229009533|ref|ZP_04166762.1| DNA polymerase III subunit gamma/tau [Bacillus mycoides DSM 2048]
 gi|228751744|gb|EEM01541.1| DNA polymerase III subunit gamma/tau [Bacillus mycoides DSM 2048]
          Length = 562

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 68/208 (32%), Gaps = 40/208 (19%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  E+  GQ      L    + A  + +A    LF GP G GKTT+A+V A+ +    
Sbjct: 11  RPQKFEDVVGQKHVTKTL----QNALLQEKASHAYLFSGPRGTGKTTIAKVFAKAINCEH 66

Query: 83  ------------------------RSTSGPVIAKAGDLAALLTNLE------DRDVLFID 112
                                               ++  +   ++         V  ID
Sbjct: 67  APVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVGYKVYIID 126

Query: 113 EIHRLSIIVEEILYPAMED--FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           E+H LS+     L   +E+    +  ++      +     +SR              N +
Sbjct: 127 EVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPATIISRCQRFEFRKIS---VNDI 183

Query: 171 QDRFGIPIRLNFYEIEDLK-TIVQRGAK 197
            +R    +     ++ED    IV R A+
Sbjct: 184 VERLSTVVTNEGTQVEDEALQIVARAAE 211


>gi|49476694|ref|YP_034378.1| DNA polymerase III subunits gamma and tau [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|228931525|ref|ZP_04094433.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|49328250|gb|AAT58896.1| DNA polymerase III, gamma and tau subunits [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|228828143|gb|EEM73869.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 562

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 69/209 (33%), Gaps = 42/209 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+  E+  GQ      L+  +       E + H  LF GP G GKTT+A+V A+ +   
Sbjct: 11  RPQKFEDVVGQKHVTKTLQNAL-----LQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCE 65

Query: 82  F------------------------RSTSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                                ++  +   ++      +  V  I
Sbjct: 66  HAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKVYII 125

Query: 112 DEIHRLSIIVEEILYPAMED--FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+H LS+     L   +E+    +  ++      +     +SR              N 
Sbjct: 126 DEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKIS---VND 182

Query: 170 LQDRFGIPIRLNFYEIEDLK-TIVQRGAK 197
           + +R    +     ++ED    IV R A+
Sbjct: 183 IVERLSTVVTNEGTQVEDEALQIVARAAE 211


>gi|89257153|ref|YP_514515.1| DNA polymerase III, gamma/tau subunits [Francisella tularensis
           subsp. holarctica LVS]
 gi|115315492|ref|YP_764215.1| DNA polymerase III, gamma/tau subunits [Francisella tularensis
           subsp. holarctica OSU18]
 gi|156503378|ref|YP_001429443.1| DNA polymerase III, subunits gamma/tau [Francisella tularensis
           subsp. holarctica FTNF002-00]
 gi|167011046|ref|ZP_02275977.1| DNA polymerase III, gamma/tau subunits [Francisella tularensis
           subsp. holarctica FSC200]
 gi|254368377|ref|ZP_04984395.1| DNA polymerase III, gamma/tau subunits [Francisella tularensis
           subsp. holarctica 257]
 gi|89144984|emb|CAJ80344.1| DNA polymerase III, gamma/tau subunits [Francisella tularensis
           subsp. holarctica LVS]
 gi|115130391|gb|ABI83578.1| DNA-directed DNA polymerase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134254185|gb|EBA53279.1| DNA polymerase III, gamma/tau subunits [Francisella tularensis
           subsp. holarctica 257]
 gi|156253981|gb|ABU62487.1| DNA polymerase III, gamma/tau subunits [Francisella tularensis
           subsp. holarctica FTNF002-00]
          Length = 545

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 79/249 (31%), Gaps = 57/249 (22%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP++  E  GQ  A ++L   +E  K         LF G  G+GKTTL +++A+
Sbjct: 5   ALARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAY----LFTGTRGVGKTTLGRLLAK 60

Query: 77  ELGVNF------------------------RSTSGPVIAKAGDLAALLTNLE------DR 106
            L                                        +   +L N++        
Sbjct: 61  CLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRY 120

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164
            V  IDE+H LS      L   +E+    +  ++      +     LSR   +       
Sbjct: 121 KVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQ 180

Query: 165 LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGR 224
                              +I+D   I+        +   +++   IA  ++G+ R A  
Sbjct: 181 T------------------DIKDQLKII---LAKENINSDEQSLEYIAYHAKGSLRDALS 219

Query: 225 LLRRVRDFA 233
           LL +   F 
Sbjct: 220 LLDQAISFC 228


>gi|68070283|ref|XP_677053.1| replication factor C, subunit 2 [Plasmodium berghei strain ANKA]
 gi|56497014|emb|CAH96737.1| replication factor C, subunit 2, putative [Plasmodium berghei]
          Length = 330

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 89/221 (40%), Gaps = 14/221 (6%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+ L++   Q  A S LK  I+      + + H++F GPPG GKT+    +A 
Sbjct: 5   PWVEKYRPKKLDDIVHQTNAISMLKEVIK-----TKNMPHLIFHGPPGTGKTSAINALAH 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAAL---LTNLEDRDVLFIDEIHRLSIIVEEILYPA--MED 131
           EL          +   A D   +      ++    + I + ++++    E L P   +  
Sbjct: 60  ELFGKENINERVLELNASDDRGINVVREKIKAYTRISISK-NKINTETNEQLPPWKLVVL 118

Query: 132 FQLDLMVGEGPSA--RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
            + D+M  +  SA  R ++I  +    I     +  +++P+  R     R     I   K
Sbjct: 119 DEADMMTEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIYSRCS-CYRFQGIPINIKK 177

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
             +    K   + ++D A  +I   ++G  R A  +L+   
Sbjct: 178 EKLLYICKNENIDISDNALSKIIETTQGDLRRAVSVLQLCA 218


>gi|21672731|ref|NP_660798.1| DNA polymerase III subunits gamma and tau [Buchnera aphidicola str.
           Sg (Schizaphis graminum)]
 gi|25008380|sp|Q8K983|DPO3X_BUCAP RecName: Full=DNA polymerase III subunit gamma
 gi|21623376|gb|AAM68009.1| DNA polymerase III subunit tau [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 363

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 49/235 (20%), Positives = 80/235 (34%), Gaps = 53/235 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP++ ++  GQ          I    +  +     L  G  G+GKTT+A+++A+ L    
Sbjct: 11  RPQSFKKIIGQKYIVK----AISNGFSLGKIHHAWLLSGTRGVGKTTIARLIAKSLNCEI 66

Query: 83  RSTS------------------------GPVIAKAGDLAALLTNL------EDRDVLFID 112
             TS                             K  ++  +L N+          V  ID
Sbjct: 67  GITSLPCRKCTICQEIEKGICLDFIEIDAASRTKVEEIREILDNIYYTPSKSRFKVYLID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS      L   +E+                         I ATT V  +   ++ 
Sbjct: 127 EVHMLSRHSFNALLKTLEE------------------PPQHIKFILATTDVEKIPKTIRS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
           R  +  +LN    ED+   ++   K  G    +EA   I+  + G+ R A  LL 
Sbjct: 169 RC-LHFKLNILSEEDIFNFLKHILKKGGNNFDEEALKIISDYANGSMRDALNLLE 222


>gi|237746948|ref|ZP_04577428.1| DNA polymerase III gamma and tau [Oxalobacter formigenes HOxBLS]
 gi|229378299|gb|EEO28390.1| DNA polymerase III gamma and tau [Oxalobacter formigenes HOxBLS]
          Length = 597

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 87/244 (35%), Gaps = 27/244 (11%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARE 77
               RP+  E   GQ      L   +E+ +     L H  LF G  G+GKTTL++++A+ 
Sbjct: 7   ARKYRPKNFESIVGQDHVVRALTHALESGR-----LHHAYLFTGTRGIGKTTLSRILAKS 61

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAME 130
           L      TS P     G+  A      DR V +I+        I  +  ++E+ +Y    
Sbjct: 62  LNCEKGITSAP----CGECEACKAIDSDRFVDYIEMDAASNRGIADMLQLLEQAVYAPTA 117

Query: 131 DFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
                 M+ E             ++++        I ATT    +   +  R  +   L 
Sbjct: 118 ARFKVYMIDEVHMLTSQAFNAMLKTLEEPPEYVKFILATTDPQKIPVTVLSRC-LQFNLK 176

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
              +  +   + R     G+     A   +A  ++G+ R A  L  +   +         
Sbjct: 177 QMPVVHIVDHLARVLDREGVPYEKTALQLLAQGAQGSMRDALSLTDQAIAYTAGKVTGEA 236

Query: 242 TREI 245
            +++
Sbjct: 237 VQDM 240


>gi|322795578|gb|EFZ18260.1| hypothetical protein SINV_11151 [Solenopsis invicta]
          Length = 354

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 48/243 (19%), Positives = 89/243 (36%), Gaps = 42/243 (17%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           +R+G  + N+      I   RP+   +  G  +  S L VF     A+     +++  GP
Sbjct: 30  ERDGKSTANL----PWIEKYRPQVFSDIVGNEDTVSRLAVF-----AQHGNTPNIIIAGP 80

Query: 63  PGLGKTTLAQVVAR------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDV 108
           PG+GKTT    +AR            EL  +       V  K    A    NL      +
Sbjct: 81  PGVGKTTTILCLARTLLGPAFKEAVLELNASNERGIDVVRNKIKMFAQKKVNLPKGKHKI 140

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           + +DE   ++   ++ L   ME +           + + +  L       A      +  
Sbjct: 141 IILDEADSMTDGAQQALRRTMEIY-----------SHTTRFAL-------ACNNTEEIIE 182

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
           P+Q R  +       + + L  +++   +   ++ TD+    I   ++G  R A   L+ 
Sbjct: 183 PIQSRCAMLRYGKLTDAQVLAKVLE-VCEKENISYTDDGMEAIVFTAQGDMRQALNNLQS 241

Query: 229 VRD 231
            R+
Sbjct: 242 TRN 244


>gi|225680958|gb|EEH19242.1| replication factor C subunit 4 [Paracoccidioides brasiliensis Pb03]
          Length = 374

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 60/177 (33%), Gaps = 34/177 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+TL++   Q    + L+  ++A+      L H+LF GPPG GKT+    +++
Sbjct: 36  PWVEKYRPKTLDDVASQEHTITVLQRTLQAS-----NLPHMLFYGPPGTGKTSTILALSK 90

Query: 77  -------------ELGVNFRSTSGPVIAKAGDLAALLTNL--------------EDRDVL 109
                        EL  +       V  K  D A +  +                   ++
Sbjct: 91  SLFGPQLYRSRILELNASDERGISIVREKIKDFARMQLSHPPVSDTAYCEKYPCPPFKII 150

Query: 110 FIDEIHRLSIIVEEILYPAMEDFQLD--LMVGEGPSARSVKINLSRFTLIAATTRVG 164
            +DE   ++   +  L   ME +       +      R +    SR +        G
Sbjct: 151 ILDEADSMTQDAQSALRRTMERYSRITRFCLVCNYVTRIIDPLASRCSKFRFKALDG 207


>gi|52424926|ref|YP_088063.1| DNA polymerase III subunits gamma and tau [Mannheimia
           succiniciproducens MBEL55E]
 gi|52306978|gb|AAU37478.1| DnaX protein [Mannheimia succiniciproducens MBEL55E]
          Length = 693

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 53/266 (19%), Positives = 86/266 (32%), Gaps = 59/266 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+   E  GQ    + L     +   R   L H  LF G  G+GKT++A++ A+ L   
Sbjct: 11  RPKNFAEVVGQEHILAAL-----SNGLRENRLHHAYLFSGTRGVGKTSIARLFAKGLNCM 65

Query: 82  F------------------------RSTSGPVIAKAGDLAALLTNLEDRD------VLFI 111
                                             K  D   LL N++ +       V  I
Sbjct: 66  DGVTAEPCGKCAHCKAIEEGNFIDLIEIDAASRTKVEDTRELLDNVQYKPVQGRYKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSRHSFNALLKTLEE------------------PPEYVKFLLATTDPQKLPVTIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L   + + +   +Q   K   +     A  ++A  +RG+ R +  L     D
Sbjct: 168 SRC-MQFNLKALDQKQISHHLQHILKEEEIPYEMTALDKLAKAARGSIRDSLSL----TD 222

Query: 232 FAEVAHAKTITREIADAALLRLAIDK 257
            A       I+R++    L  L  ++
Sbjct: 223 QAIAMSNGNISRDVVRVMLGLLDDNQ 248


>gi|304315581|ref|YP_003850726.1| DNA polymerase III subunits gamma and tau [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777083|gb|ADL67642.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 533

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 50/275 (18%), Positives = 91/275 (33%), Gaps = 30/275 (10%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
              RPR   E  GQ      LK  I+  +         LF G  G GKT++A++ A+ + 
Sbjct: 7   RKYRPRNFSEVLGQNHIVRTLKNQIKTGRIGHAY----LFCGTRGTGKTSVAKIFAKAVN 62

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII-----VEEILYPAMEDFQL 134
                   P       +     N    D++ ID     S+       + I+Y        
Sbjct: 63  CPNSVEGEPCNRC--QICESANNNSLIDIIEIDAASNNSVDDVRELRDNIIYAPSICKYK 120

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             ++ E             ++++   S    I ATT    +   +  R            
Sbjct: 121 VYIIDEVHMLSGSAFNALLKTLEEPPSHAIFILATTEPNKIPATILSRCQ-RFDFKRIPS 179

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR------VRDFAEVAHAK 239
           + +   + + AK + + + + A   IA    G+ R A  +L +      V  + +V    
Sbjct: 180 KVISQNIGKIAKDSNINIENRAIAMIARHGNGSMRDAISILEQCVSYNDVLTYDDVCDIL 239

Query: 240 TITREIADAALLRLAIDKMG---FDQLDLRYLTMI 271
               +     L++   D+      +Q+D   L  I
Sbjct: 240 GTVNDDTLYTLVKRINDRNAKEVINQIDKLMLYGI 274


>gi|332875338|ref|ZP_08443167.1| DNA polymerase III, subunit gamma and tau [Acinetobacter baumannii
           6014059]
 gi|332736442|gb|EGJ67440.1| DNA polymerase III, subunit gamma and tau [Acinetobacter baumannii
           6014059]
          Length = 678

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 83/257 (32%), Gaps = 53/257 (20%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RPR   E  GQ          + +A  R       LF G  G+GKTT+A+++A+ L
Sbjct: 6   ARKYRPRNFNELVGQNHV----SRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCL 61

Query: 79  GVNFRSTS------------------------GPVIAKAGDLAALLTNL------EDRDV 108
                 TS                             K  D   LL N+          V
Sbjct: 62  NCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKV 121

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
             IDE+H LS      L   +E+                         + ATT    L  
Sbjct: 122 YLIDEVHMLSTHSFNALLKTLEE------------------PPEHVKFLFATTDPQKLPI 163

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            +  R  +   L    ++++   +    +   +A   +A  +IA  ++G+ R A  L  +
Sbjct: 164 TVISRC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALSLTDQ 222

Query: 229 VRDFAEVAHAKTITREI 245
              + + A      +E+
Sbjct: 223 AIAYGQGAVHHQDVKEM 239


>gi|323518491|gb|ADX92872.1| DNA polymerase III, gamma/tau subunit [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 692

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 83/257 (32%), Gaps = 53/257 (20%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RPR   E  GQ          + +A  R       LF G  G+GKTT+A+++A+ L
Sbjct: 6   ARKYRPRNFNELVGQNHV----SRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCL 61

Query: 79  GVNFRSTS------------------------GPVIAKAGDLAALLTNL------EDRDV 108
                 TS                             K  D   LL N+          V
Sbjct: 62  NCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKV 121

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
             IDE+H LS      L   +E+                         + ATT    L  
Sbjct: 122 YLIDEVHMLSTHSFNALLKTLEE------------------PPEHVKFLFATTDPQKLPI 163

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            +  R  +   L    ++++   +    +   +A   +A  +IA  ++G+ R A  L  +
Sbjct: 164 TVISRC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALSLTDQ 222

Query: 229 VRDFAEVAHAKTITREI 245
              + + A      +E+
Sbjct: 223 AIAYGQGAVHHQDVKEM 239


>gi|322507665|gb|ADX03119.1| DNA polymerase III, tau and gamma subunits [Acinetobacter baumannii
           1656-2]
          Length = 710

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 83/257 (32%), Gaps = 53/257 (20%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RPR   E  GQ          + +A  R       LF G  G+GKTT+A+++A+ L
Sbjct: 6   ARKYRPRNFNELVGQNHV----SRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCL 61

Query: 79  GVNFRSTS------------------------GPVIAKAGDLAALLTNL------EDRDV 108
                 TS                             K  D   LL N+          V
Sbjct: 62  NCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKV 121

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
             IDE+H LS      L   +E+                         + ATT    L  
Sbjct: 122 YLIDEVHMLSTHSFNALLKTLEE------------------PPEHVKFLFATTDPQKLPI 163

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            +  R  +   L    ++++   +    +   +A   +A  +IA  ++G+ R A  L  +
Sbjct: 164 TVISRC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALSLTDQ 222

Query: 229 VRDFAEVAHAKTITREI 245
              + + A      +E+
Sbjct: 223 AIAYGQGAVHHQDVKEM 239


>gi|253575674|ref|ZP_04853010.1| ATP-dependent protease LonB [Paenibacillus sp. oral taxon 786 str.
           D14]
 gi|251845012|gb|EES73024.1| ATP-dependent protease LonB [Paenibacillus sp. oral taxon 786 str.
           D14]
          Length = 572

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 59/267 (22%), Positives = 91/267 (34%), Gaps = 58/267 (21%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                 RP ++ +  GQ +    LK  + +A  +     HV+  GPPG+GKT  A+VV  
Sbjct: 58  PLAERTRPASMNDIVGQKDGLRALKAALCSANPQ-----HVIIYGPPGVGKTAAARVVME 112

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR------------------------------ 106
           E   N  S      AK  ++ A +   ++R                              
Sbjct: 113 EAKKNPVSPF-KSDAKFVEIDATIARFDERGIADPLIGSVHDPIYQGAGAMGVAGIPQPK 171

Query: 107 ---------DVLFIDEIHRLSIIVEEILYPAMEDFQLDL------MVGEGPSARSVKI-- 149
                     +LFIDEI  L  I    L   +ED ++ L             A    I  
Sbjct: 172 PGAVTKAHGGILFIDEIGELHSIQMNKLLKVLEDRKVFLESAYYNSEDSNTPAYIHDIFQ 231

Query: 150 --NLSRFTLIAATTRV-GLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDE 206
               + F L+ ATTR    +   L+ R  + I       E++  I +   K  G     E
Sbjct: 232 NGLPADFRLVGATTRSPQEIPAALRSRC-MEIYFRPLLPEEIAQIAEDAVKRIGFQPCPE 290

Query: 207 AACEIAMRSRGTPRIAGRLLRRVRDFA 233
            A E+  +     R A  +++     A
Sbjct: 291 -AIEVIKKYATNGREAVNMVQLAAGLA 316


>gi|184158568|ref|YP_001846907.1| DNA polymerase III subunit gamma/tau [Acinetobacter baumannii
           ACICU]
 gi|183210162|gb|ACC57560.1| DNA polymerase III, gamma/tau subunit [Acinetobacter baumannii
           ACICU]
          Length = 680

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 83/257 (32%), Gaps = 53/257 (20%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RPR   E  GQ          + +A  R       LF G  G+GKTT+A+++A+ L
Sbjct: 6   ARKYRPRNFNELVGQNHV----SRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCL 61

Query: 79  GVNFRSTS------------------------GPVIAKAGDLAALLTNL------EDRDV 108
                 TS                             K  D   LL N+          V
Sbjct: 62  NCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKV 121

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
             IDE+H LS      L   +E+                         + ATT    L  
Sbjct: 122 YLIDEVHMLSTHSFNALLKTLEE------------------PPEHVKFLFATTDPQKLPI 163

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            +  R  +   L    ++++   +    +   +A   +A  +IA  ++G+ R A  L  +
Sbjct: 164 TVISRC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALSLTDQ 222

Query: 229 VRDFAEVAHAKTITREI 245
              + + A      +E+
Sbjct: 223 AIAYGQGAVHHQDVKEM 239


>gi|22298675|ref|NP_681922.1| DNA polymerase III gamma and tau subunits [Thermosynechococcus
           elongatus BP-1]
 gi|22294855|dbj|BAC08684.1| DNA polymerase III gamma and tau subunits [Thermosynechococcus
           elongatus BP-1]
          Length = 603

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 85/233 (36%), Gaps = 19/233 (8%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +      RP+   +  GQ    + L      A  +       LF GP G GKT+ A+++A
Sbjct: 4   EPLHHKYRPQRFSDLVGQGAIATTL----TQALLKERIAPAYLFCGPRGTGKTSSARILA 59

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAME 130
           + L     S   P      ++   + N    DV+ ID      +  +  ++E+  +  ++
Sbjct: 60  KSLNCLRSSKPTPDPCGQCEVCRQVANGTSLDVIEIDAASHTGVDNIRELIEKAQFAPVQ 119

Query: 131 DFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
                 ++ E             ++++    +   I ATT    +   +  R        
Sbjct: 120 CRYKVYVIDECHMLSVSAFNALLKTLEEPPPQVVFILATTDPQRVLPTIISRCQ-RFDFR 178

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
              + ++   +Q  A    + +  EA   +A  S+G  R A  LL ++  + E
Sbjct: 179 RIPLGEMVAHLQNIADKEQIDIEPEALTLVAQLSQGGLRDAESLLDQLSLYPE 231


>gi|270158083|ref|ZP_06186740.1| DNA polymerase III subunit gamma/tau [Legionella longbeachae
           D-4968]
 gi|289163651|ref|YP_003453789.1| DNA polymerase III, gamma and tau subunits [Legionella longbeachae
           NSW150]
 gi|269990108|gb|EEZ96362.1| DNA polymerase III subunit gamma/tau [Legionella longbeachae
           D-4968]
 gi|288856824|emb|CBJ10635.1| DNA polymerase III, gamma and tau subunits [Legionella longbeachae
           NSW150]
          Length = 549

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 60/312 (19%), Positives = 96/312 (30%), Gaps = 66/312 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPRT  +  GQ       K  +  A  +       LF G  G+GKT++A+++A+ L    
Sbjct: 11  RPRTFSQLVGQDHI----KTALTNALNQQRLHHAYLFTGTRGVGKTSIARILAKSLNCEQ 66

Query: 83  RSTSGPVI------------------------AKAGDLAALLTNLE------DRDVLFID 112
              S P +                         +  D   LL N++         +  ID
Sbjct: 67  GINSMPCLLCGTCCAIEQGRFIDLIEIDGASKTRVEDTRDLLDNVQYLPTSGRFKIYLID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS      L   +E+                         I ATT    L   +  
Sbjct: 127 EVHMLSQHSFNALLKTLEE------------------PPEHVKFILATTDPQKLPITVLS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R  +   L     E +   +Q   K   L    +A   +A  +RG+ R A  LL +    
Sbjct: 169 RC-LQFHLKHLSTELISQQLQLILKDEQLDFESQAVDILAKAARGSMRDALSLLDQA--- 224

Query: 233 AEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEP 292
             +A   T         LL                L  +A         +  IS  +S  
Sbjct: 225 --IAGCSTQLCASDVKMLLGYTQQDYALQ-----LLQALAEQ---NASMLLKISHQVSLE 274

Query: 293 RDAIEDLIEPYM 304
               + +++  +
Sbjct: 275 GGHFQYVLDELL 286


>gi|218901224|ref|YP_002449058.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus AH820]
 gi|218540226|gb|ACK92624.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus AH820]
          Length = 562

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 69/209 (33%), Gaps = 42/209 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+  E+  GQ      L+  +       E + H  LF GP G GKTT+A+V A+ +   
Sbjct: 11  RPQKFEDVVGQKHVTKTLQNAL-----LQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCE 65

Query: 82  F------------------------RSTSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                                ++  +   ++      +  V  I
Sbjct: 66  HAPVAEPCNECPSCLGITQGAISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKVYII 125

Query: 112 DEIHRLSIIVEEILYPAMED--FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+H LS+     L   +E+    +  ++      +     +SR              N 
Sbjct: 126 DEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKIS---VND 182

Query: 170 LQDRFGIPIRLNFYEIEDLK-TIVQRGAK 197
           + +R    +     ++ED    IV R A+
Sbjct: 183 IVERLSTVVTNEGTQVEDEALQIVARAAE 211


>gi|328676240|gb|AEB27110.1| DNA polymerase III subunits gamma and tau [Francisella cf. novicida
           Fx1]
          Length = 546

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 79/249 (31%), Gaps = 57/249 (22%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP++  E  GQ  A ++L   +E  K         LF G  G+GKTTL +++A+
Sbjct: 5   ALARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAY----LFTGTRGVGKTTLGRLLAK 60

Query: 77  ELGVNF------------------------RSTSGPVIAKAGDLAALLTNLE------DR 106
            L                                        +   +L N++        
Sbjct: 61  CLNCKIGVTAEPCNKCENCVAINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRY 120

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164
            V  IDE+H LS      L   +E+    +  ++      +     LSR   +       
Sbjct: 121 KVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQ 180

Query: 165 LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGR 224
                              +I+D   I+        +   +++   IA  ++G+ R A  
Sbjct: 181 A------------------DIKDQLKII---LAKENINSDEQSLEYIAYHAKGSLRDALS 219

Query: 225 LLRRVRDFA 233
           LL +   F 
Sbjct: 220 LLDQAISFC 228


>gi|269123513|ref|YP_003306090.1| DNA polymerase III, subunits gamma and tau [Streptobacillus
           moniliformis DSM 12112]
 gi|268314839|gb|ACZ01213.1| DNA polymerase III, subunits gamma and tau [Streptobacillus
           moniliformis DSM 12112]
          Length = 455

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 48/248 (19%), Positives = 97/248 (39%), Gaps = 29/248 (11%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVAREL 78
              RP+   E  GQ      +K  ++      + L H  LF GP G+GKTT+A+++A+  
Sbjct: 8   RKYRPQNFSELYGQEHIVRAIKNSLD-----NDKLSHAYLFNGPRGVGKTTIARLIAKGA 62

Query: 79  GVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
             N   TS P        ++   ++     D++ ID      I  +  + E   Y  ++ 
Sbjct: 63  NCNSGITSNPCDDCENCKEITKGISV----DIIEIDAASNRGIDEIRDLKESTGYLPVKC 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
            +   ++ E             + ++        I ATT +  + + +  R         
Sbjct: 119 RKKVYIIDEVHMLTKEAFNALLKILEEPPKHIIFILATTEIEKIPDTVISRCQRYDFKTI 178

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            E + +  ++++ AK   + +  E+   I  +S G+ R +  +  +V   +   +   IT
Sbjct: 179 SETDII-NMLKKVAKNENINIDTESLELIYSKSEGSARDSFSIFEQVT--SNYYNEDEIT 235

Query: 243 REIADAAL 250
            +  + AL
Sbjct: 236 IDKTEKAL 243


>gi|228988775|ref|ZP_04148851.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228770955|gb|EEM19445.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 548

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 85/232 (36%), Gaps = 22/232 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     RP    E  GQ      ++  ++ AK       H  +F GP G GKTT+A+++A
Sbjct: 4   ALYRKYRPTNFIELIGQNHIKQTIQNALKLAK-----FSHAYMFTGPRGTGKTTIAKLIA 58

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAME 130
             L     +  G    +     A+  N    DVL ID      + ++  I E++ Y    
Sbjct: 59  TSLNCENLNNEGEPCNECSQCKAIRGNSHA-DVLEIDAASNNGVEQIREIREQVAYAPGT 117

Query: 131 DFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
                 ++ E             ++++        I ATT V  +   +  R        
Sbjct: 118 GKYKVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTDVHKIPATIISRCQ-RFDFR 176

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                D+   ++  A    + + +EA   + M ++G  R A  L+ +   FA
Sbjct: 177 RIGPRDIIERLRHVAIKEEVKIEEEALQLLGMLAQGGMRDALSLMDQTIAFA 228


>gi|229053869|ref|ZP_04195306.1| DNA polymerase III subunit gamma/tau [Bacillus cereus AH603]
 gi|229131030|ref|ZP_04259945.1| DNA polymerase III subunit gamma/tau [Bacillus cereus BDRD-ST196]
 gi|228652425|gb|EEL08347.1| DNA polymerase III subunit gamma/tau [Bacillus cereus BDRD-ST196]
 gi|228721479|gb|EEL72996.1| DNA polymerase III subunit gamma/tau [Bacillus cereus AH603]
          Length = 562

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 68/208 (32%), Gaps = 40/208 (19%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  E+  GQ      L    + A  + +A    LF GP G GKTT+A+V A+ +    
Sbjct: 11  RPQKFEDVVGQKHVTKTL----QNALLQEKASHAYLFSGPRGTGKTTIAKVFAKAINCEH 66

Query: 83  ------------------------RSTSGPVIAKAGDLAALLTNLE------DRDVLFID 112
                                               ++  +   ++         V  ID
Sbjct: 67  APVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVGYKVYIID 126

Query: 113 EIHRLSIIVEEILYPAMED--FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           E+H LS+     L   +E+    +  ++      +     +SR              N +
Sbjct: 127 EVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPATIISRCQRFEFRKIS---VNDI 183

Query: 171 QDRFGIPIRLNFYEIEDLK-TIVQRGAK 197
            +R    +     ++ED    IV R A+
Sbjct: 184 VERLSTVVTNEGTQVEDEALQIVARAAE 211


>gi|213983145|ref|NP_001135488.1| replication factor C (activator 1) 2, 40kDa [Xenopus (Silurana)
           tropicalis]
 gi|195539917|gb|AAI67884.1| Unknown (protein for MGC:135299) [Xenopus (Silurana) tropicalis]
          Length = 345

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 77/227 (33%), Gaps = 38/227 (16%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   +   RP  L E  G  E  S L+VF     AR   + +++  GPPG GKTT    +
Sbjct: 30  ELPWVEKYRPLKLSEIVGNEETVSRLEVF-----AREGNVPNIIIAGPPGTGKTTSILCL 84

Query: 75  AR------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIHRLSII 120
           AR            EL  +       V  K    A     L      ++ +DE   ++  
Sbjct: 85  ARALLGPTMKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDG 144

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            ++ L   ME +                   +RF    A      +  P+Q R  +    
Sbjct: 145 AQQALRRTMEIYSKT----------------TRF--ALACNASDKIIEPIQSRCAVLRYT 186

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
              + + L   +    +   +  TD+    I   ++G  R A   L+
Sbjct: 187 KLTDAQVLAR-LMDVVEKERVQCTDDGLEAIVFTAQGDMRQALNNLQ 232


>gi|52145193|ref|YP_081637.1| DNA polymerase III subunits gamma and tau [Bacillus cereus E33L]
 gi|51978662|gb|AAU20212.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus E33L]
          Length = 562

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 69/209 (33%), Gaps = 42/209 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+  E+  GQ      L+  +       E + H  LF GP G GKTT+A+V A+ +   
Sbjct: 11  RPQKFEDVVGQKHVTKTLQNAL-----LQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCE 65

Query: 82  F------------------------RSTSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                                ++  +   ++      +  V  I
Sbjct: 66  HAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKVYII 125

Query: 112 DEIHRLSIIVEEILYPAMED--FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+H LS+     L   +E+    +  ++      +     +SR              N 
Sbjct: 126 DEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKIS---VND 182

Query: 170 LQDRFGIPIRLNFYEIEDLK-TIVQRGAK 197
           + +R    +     ++ED    IV R A+
Sbjct: 183 IVERLSTVVTNEGTQVEDEALQIVARAAE 211


>gi|228943829|ref|ZP_04106216.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228815853|gb|EEM62087.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 562

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 69/209 (33%), Gaps = 42/209 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+  E+  GQ      L+  +       E + H  LF GP G GKTT+A+V A+ +   
Sbjct: 11  RPQKFEDVVGQKHVTKTLQNAL-----LQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCE 65

Query: 82  F------------------------RSTSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                                ++  +   ++      +  V  I
Sbjct: 66  HAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKVYII 125

Query: 112 DEIHRLSIIVEEILYPAMED--FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+H LS+     L   +E+    +  ++      +     +SR              N 
Sbjct: 126 DEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKIS---VND 182

Query: 170 LQDRFGIPIRLNFYEIEDLK-TIVQRGAK 197
           + +R    +     ++ED    IV R A+
Sbjct: 183 IVERLSTVVTNEGTQVEDEALQIVARAAE 211


>gi|229027870|ref|ZP_04184027.1| DNA polymerase III subunit gamma/tau [Bacillus cereus AH1271]
 gi|228733446|gb|EEL84271.1| DNA polymerase III subunit gamma/tau [Bacillus cereus AH1271]
          Length = 562

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 69/209 (33%), Gaps = 42/209 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+  E+  GQ      L+  +       E + H  LF GP G GKTT+A+V A+ +   
Sbjct: 11  RPQKFEDVVGQKHVTKTLQNAL-----LQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCE 65

Query: 82  F------------------------RSTSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                                ++  +   ++      +  V  I
Sbjct: 66  HAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKVYII 125

Query: 112 DEIHRLSIIVEEILYPAMED--FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+H LS+     L   +E+    +  ++      +     +SR              N 
Sbjct: 126 DEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKIS---VND 182

Query: 170 LQDRFGIPIRLNFYEIEDLK-TIVQRGAK 197
           + +R    +     ++ED    IV R A+
Sbjct: 183 IVERLSTVVTNEGTQVEDEALQIVARAAE 211


>gi|145543416|ref|XP_001457394.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124425210|emb|CAK89997.1| unnamed protein product [Paramecium tetraurelia]
          Length = 673

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 57/276 (20%), Positives = 102/276 (36%), Gaps = 33/276 (11%)

Query: 2   MDREGLL--SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH--- 56
           MDR   +  S    QE+ +I    P    +  G  E    L+  +E  K   +  D    
Sbjct: 219 MDRFYNILRSNQAVQEERNI----PTRFNDVLGIDEFKEELEEIVEFLKNPKKYTDSGAK 274

Query: 57  ----VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA------KAGDLAALLTNLEDR 106
               +L VGPPG GKT LA+ +A E G  F   SG           A  +  +      +
Sbjct: 275 LPKGILLVGPPGTGKTLLARALAGEAGCAFFYKSGSEFDEMFVGVGASRVREIFKTARQK 334

Query: 107 --DVLFIDEIHRL--SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTR 162
              ++FIDEI  +      ++   P      ++ ++ E    +  +       +I AT  
Sbjct: 335 APSIIFIDEIDSIGGRRRAQD---PGYSRDTINQILTEMDGFKQSES----VIVIGATNF 387

Query: 163 VGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPR 220
             +L   L+   RF   I +   +++  + I     +     V       +A ++ G   
Sbjct: 388 EQVLDPALKRPGRFDKMIHVPLPDVKGREQIFSYYLQRIKYDVQKVLPTNLARQTSGFSG 447

Query: 221 IAGRLLRRVRDFAEVAHAK-TITREIADAALLRLAI 255
              + +  V     + + +   T E  + A+ R+A+
Sbjct: 448 ADIQNMVNVAILNAIKYDRQIATTEDFEFAIDRIAM 483


>gi|83814225|ref|YP_446655.1| DNA polymerase III, subunits gamma and tau, putative [Salinibacter
           ruber DSM 13855]
 gi|83755619|gb|ABC43732.1| DNA polymerase III, subunits gamma and tau, putative [Salinibacter
           ruber DSM 13855]
          Length = 728

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 63/349 (18%), Positives = 103/349 (29%), Gaps = 80/349 (22%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFV 60
           MD +  L              RP    E   Q      LK  I       E L H  LF 
Sbjct: 1   MDEQRYL--------VTARKYRPSLFTEVVAQEHVTETLKNAIRM-----ERLAHAYLFS 47

Query: 61  GPPGLGKTTLAQVVARELGV-----------------------------NFRSTSGPVIA 91
           GP G+GKTT A+++A+ +                               N          
Sbjct: 48  GPRGVGKTTAARILAKAINCETPREEREDGAEPCCECDSCESFEAGRSLNVFEMDAASNN 107

Query: 92  KAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMED---FQLDLMVGEGP 142
           K  D+  L   +        + V  +DE+H LS      L   +E+     L +     P
Sbjct: 108 KVDDIRELREKVRIPPQGDQKKVYILDEVHMLSKQAFNALLKTLEEPPAHALFIFATTEP 167

Query: 143 SARSVKINLSRFTLIAATTR-VGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
             + +   LSR          V  +   L++           + E L  + ++G      
Sbjct: 168 H-KVLPTILSRCQRFDFRRIPVPEIVQRLREICETEGVEA--DEESLMLLARKGNGALRD 224

Query: 202 AVTD--------EAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           A++          A  E    ++    +   L  R+ D   VA   T         ++R 
Sbjct: 225 ALSAFDQALSLCGATLEYGELTQALGVVDQDLYFRLTD--HVAAQDTAGMIELVRHVVRS 282

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             D           L  +A +       +  +    S   +A+E++ E 
Sbjct: 283 GYDLQ-------EMLVGLAEH-------LRNLLVAHSLGGEALEEVAES 317


>gi|325130515|gb|EGC53270.1| DNA polymerase III, subunits gamma and tau [Neisseria meningitidis
           OX99.30304]
          Length = 709

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 48/303 (15%), Positives = 88/303 (29%), Gaps = 63/303 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T  +  GQ      L+  ++  +     L H  L  G  G+GKTT+A+++A+ L   
Sbjct: 11  RPKTFSDLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCE 65

Query: 82  FRS------------------------TSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                                ++  +L N +         V  I
Sbjct: 66  NAQHGEPCGVCESCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYII 125

Query: 112 DEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+H LS      +   +E+    +  ++      +     LSR                
Sbjct: 126 DEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNM------- 178

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
                           + +   +        +     A   +   + G+ R A  LL + 
Sbjct: 179 --------------TAQQVADHLAHVLDSEKITYAPPALQLLGRAAAGSMRDALSLLDQA 224

Query: 230 RDFAEVAHAKTITREIADAALLRLAIDKM-GFDQLDLRYLTMIARNFGGGPVGIETISAG 288
                   A+   R++  A   +   + + G    D   L   A+      VG +     
Sbjct: 225 IALGSGKVAENDVRQMIGAVDKQYLYELLTGIINQDGAALLAKAQEMAACAVGFDN---A 281

Query: 289 LSE 291
           L E
Sbjct: 282 LGE 284


>gi|319744863|gb|EFV97199.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus
           agalactiae ATCC 13813]
          Length = 554

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 52/259 (20%), Positives = 92/259 (35%), Gaps = 27/259 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     R +T +E  GQ    + LK  + + K         LF GP G GKT+ A++ A+
Sbjct: 4   ALYRKYRSQTFDEMVGQSVISTTLKQAVSSKKISHAY----LFSGPRGTGKTSAAKIFAK 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +    +    P      D+   +TN    DV+ ID      +  +  I ++  Y     
Sbjct: 60  AMNCPNQVNGEPCNHC--DICRDITNGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSRA 117

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQD---RFGIPIR 179
                ++ E             ++++        I ATT +  +   +     RF     
Sbjct: 118 TYKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAI 177

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
                 + L  I+ + A    ++   +A   +A R+ G  R A  +L +    A+  H  
Sbjct: 178 KLLAIRDHLAQILDKEA----ISYDLDALTLVARRAEGGMRDALSILDQALSLAKDNHIS 233

Query: 240 TITREIADAALLRLAIDKM 258
               E    ++   AID  
Sbjct: 234 LDVAEEITGSISLSAIDDY 252


>gi|312215534|emb|CBX95486.1| hypothetical protein [Leptosphaeria maculans]
          Length = 434

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 53/244 (21%), Positives = 82/244 (33%), Gaps = 39/244 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+TL E T Q      L   ++++      L H+LF GPPG GKT+    +A+
Sbjct: 34  PWVEKYRPKTLSEVTAQDNTIQILSRTLQSS-----NLPHMLFYGPPGTGKTSTILALAK 88

Query: 77  -------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-DVLFIDEI-------- 114
                        EL  +       V  K  D A    +L     V+  D+         
Sbjct: 89  QLYGPDLLKSRVLELNASDERGISIVRQKVKDFARQQLSLAPSYSVMVEDKAAAGRGEDE 148

Query: 115 ------HRLSIIVEEILYPAMEDFQLDLMVGEGPSA----RSVKINLSRFTLIAA-TTRV 163
                  +++   +    P  +   LD        A    R      SR T        V
Sbjct: 149 AAGTGEKKMARYRDVYPCPPFKIIVLDEADSMTQDAQSALRRTMETYSRVTRFCLVCNYV 208

Query: 164 GLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAG 223
             + +PL  R     R    +  +    V   A+L G+A+    A E+   + G  R A 
Sbjct: 209 TRIIDPLASRCS-KFRFKSLDQGNAVRRVADIARLEGVALDPGVAEELVRVAEGDLRKAI 267

Query: 224 RLLR 227
             L+
Sbjct: 268 TFLQ 271


>gi|308159615|gb|EFO62141.1| Replication factor C, sub 2 [Giardia lamblia P15]
          Length = 351

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 79/243 (32%), Gaps = 42/243 (17%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE----- 77
           RP +L+    Q  A    K  IE+       + H+L  GP G GKTTL   +  E     
Sbjct: 10  RPMSLDRVMHQDHAVRAAKRCIESG-----NMPHMLLYGPAGTGKTTLIHAMMHEFFGPR 64

Query: 78  -LGVNFRSTSGPVIAKAGDLAALLTNLEDRDV------------------LFIDEIHRLS 118
                    +         +   + ++    +                  + +DE   L+
Sbjct: 65  FWRARVNEFNASTDRGIKIVRERIKSIARTVIAVAPDDVKAVYPCPDFQVIILDEADALT 124

Query: 119 IIVEEILYPAMEDFQLD--LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
              +  L   +EDF       +     ++ +   +SR    A ++    L   + DR   
Sbjct: 125 RESQAALRRIIEDFSETTRFCIICNYPSQIIAPIVSRCARFAFSSLPQSL---IIDRLEA 181

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
                 +++        R A     +   EA  E+A  S+G  R A  LL+    F +  
Sbjct: 182 ICYAEMHQL--------RNANEKLSSSASEALGEVATLSQGDMRAAITLLQATVQFCQNM 233

Query: 237 HAK 239
             +
Sbjct: 234 GEE 236


>gi|290953351|ref|ZP_06557972.1| DNA polymerase III, gamma/tau subunits [Francisella tularensis
           subsp. holarctica URFT1]
 gi|295313398|ref|ZP_06804005.1| DNA polymerase III, gamma/tau subunits [Francisella tularensis
           subsp. holarctica URFT1]
          Length = 545

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 79/249 (31%), Gaps = 57/249 (22%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP++  E  GQ  A ++L   +E  K         LF G  G+GKTTL +++A+
Sbjct: 5   ALARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAY----LFTGTRGVGKTTLGRLLAK 60

Query: 77  ELGVNF------------------------RSTSGPVIAKAGDLAALLTNLE------DR 106
            L                                        +   +L N++        
Sbjct: 61  CLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRY 120

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164
            V  IDE+H LS      L   +E+    +  ++      +     LSR   +       
Sbjct: 121 KVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQ 180

Query: 165 LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGR 224
                              +I+D   I+        +   +++   IA  ++G+ R A  
Sbjct: 181 T------------------DIKDQLKII---LAKENINSDEQSLEYIAYHAKGSLRDALS 219

Query: 225 LLRRVRDFA 233
           LL +   F 
Sbjct: 220 LLDQAISFC 228


>gi|254694837|ref|ZP_05156665.1| DNA polymerase III subunits gamma and tau [Brucella abortus bv. 3
           str. Tulya]
 gi|261215165|ref|ZP_05929446.1| DNA polymerase III gamma and tau [Brucella abortus bv. 3 str.
           Tulya]
 gi|260916772|gb|EEX83633.1| DNA polymerase III gamma and tau [Brucella abortus bv. 3 str.
           Tulya]
          Length = 602

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 90/248 (36%), Gaps = 25/248 (10%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+  ++  GQ      L+   E  +         +  G  G+GKTT A+++AR L
Sbjct: 14  ARKYRPQNFDDLIGQEPMVRTLRNAFETGRIAQAW----MLTGVRGVGKTTTARILARAL 69

Query: 79  GVNFRSTSGPVI--AKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
                +   P I  +  G+    +      DV+ +D      I  +  I+E++ Y  +  
Sbjct: 70  NYKTNTVDQPTIDLSTPGEHCQAIMEGRHVDVIEMDAASHTGIDDIREIIEQVRYRPVSA 129

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT +  +   +  R      L  
Sbjct: 130 RYKVYIIDEVHMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKVPITVLSRCQ-RFDLRR 188

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            E   L   ++R A+   + V D +   IA    G+ R +  +     D A    A ++T
Sbjct: 189 IESGTLAQHLRRIAEAEKIEVDDASLAMIARAGEGSARDSLSIF----DQAIAHGAGSVT 244

Query: 243 REIADAAL 250
            E   + L
Sbjct: 245 AEAVRSML 252


>gi|207342744|gb|EDZ70411.1| YLR397Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 671

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 81/226 (35%), Gaps = 30/226 (13%)

Query: 16  DADISLLR------PR-TLEEFTGQVEACSNLKVFIEA--------AKARAEALDHVLFV 60
           D   S +R      P+    +  GQ E  + +K  I+         A+    A   VL  
Sbjct: 388 DIRPSAMREIFLEMPKVYWSDIGGQEELKTKMKEMIQLPLEASETFARLGISAPKGVLLY 447

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DVLFID 112
           GPPG  KT  A+ +A E G+NF +  GP I     G+    +  +  +       ++F D
Sbjct: 448 GPPGCSKTLTAKALATESGINFLAVKGPEIFNKYVGESERAIREIFRKARSAAPSIIFFD 507

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           EI  LS   +     A       L+             L    ++AAT R   +   L  
Sbjct: 508 EIDALSPDRDGSSTSAANHVLTSLLNEIDGVEE-----LKGVVIVAATNRPDEIDAALLR 562

Query: 173 --RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSR 216
             R    I +   ++     I+++  K      +     E+A R+ 
Sbjct: 563 PGRLDRHIYVGPPDVNARLEILKKCTKKFNTEESGVDLHELADRTE 608



 Score = 49.7 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 73/224 (32%), Gaps = 22/224 (9%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVA 75
           P +     G  +   +LK  IE    +              +L  GPPG GKT L +VVA
Sbjct: 132 PLSYAAVGGLDKEIESLKSAIEIPLHQPTLFSSFGVSPPRGILLHGPPGTGKTMLLRVVA 191

Query: 76  RELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYP 127
                +  + +GP I           L  +          ++FIDEI  ++         
Sbjct: 192 NTSNAHVLTINGPSIVSKYLGETEAALRDIFNEARKYQPSIIFIDEIDSIAPNRANDDSG 251

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
            +E   +  ++              +  +IAAT R   +   L+   RF   + +   ++
Sbjct: 252 EVESRVVATLLTL----MDGMGAAGKVVVIAATNRPNSVDPALRRPGRFDQEVEIGIPDV 307

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           +    I+ +             +  I   +  T    G  L  +
Sbjct: 308 DARFDILTKQFSRMSSDRHVLDSEAIKYIASKTHGYVGADLTAL 351


>gi|319410691|emb|CBY91070.1| DNA polymerase III tau/gamma subunits [Neisseria meningitidis WUE
           2594]
          Length = 709

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 50/303 (16%), Positives = 91/303 (30%), Gaps = 63/303 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T  +  GQ      L+  ++  +     L H  L  G  G+GKTT+A+++A+ L   
Sbjct: 11  RPKTFSDLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCE 65

Query: 82  FRS------------------------TSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                                ++  +L N +         V  I
Sbjct: 66  NAQHGEPCGVCESCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYII 125

Query: 112 DEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+H LS      +   +E+    +  ++      +     LSR                
Sbjct: 126 DEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLHNM------- 178

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
                           + +   +        +A    A   +   + G+ R A  LL + 
Sbjct: 179 --------------TSQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQA 224

Query: 230 RDFAEVAHAKTITREIADAALLRLAIDKM-GFDQLDLRYLTMIARNFGGGPVGIETISAG 288
                 + A+   R++  A   +   + + G    D   LT  A+      VG +     
Sbjct: 225 IAMGSGSVAEQDVRQMIGAVDKQYLYELLTGIINQDGAALTAKAQEMAACAVGFDN---A 281

Query: 289 LSE 291
           L E
Sbjct: 282 LGE 284


>gi|241829143|ref|XP_002414742.1| replication factor C, subunit RFC4, putative [Ixodes scapularis]
 gi|215508954|gb|EEC18407.1| replication factor C, subunit RFC4, putative [Ixodes scapularis]
          Length = 363

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 54/293 (18%), Positives = 90/293 (30%), Gaps = 62/293 (21%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+T+++   Q E  S LK  +  A      L ++LF GPPG GKT+    ++R
Sbjct: 34  PWVEKYRPKTVDDVAHQDEVVSVLKKSLLGAD-----LPNLLFYGPPGTGKTSTILALSR 88

Query: 77  E-----LGVNFRSTSGPVIAKAGDLAALLTNLEDRD---------------VLFIDEIHR 116
           E             +         +   + N                    ++ +DE   
Sbjct: 89  ELFGDMYKSRILELNASDERGIQVVREKIKNFSQLTANATRPDGRPCPPFKIVILDEADS 148

Query: 117 LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
           ++   +  L   ME                     +RF        +  +  PL  R   
Sbjct: 149 MTPSAQAALRRTMEKQTKT----------------TRF--CLICNYISRIIEPLTSRCS- 189

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEI---AMRSRGTPRIAGRLLRRV---- 229
             R      + L   +Q+      +   DEA            G  R A  L + V    
Sbjct: 190 KFRFKPLPKDILLERLQKICTAENVQCDDEAILFFFFLKSACLGDMRRAITLFQSVSRLK 249

Query: 230 -------RDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNF 275
                   D AEVA    I +   D  L   A +   +++LD     ++   +
Sbjct: 250 LGEPVLTEDVAEVAC--IIPKSWVDRVLQTCASNS--YEKLDQTIQDLVLEGY 298


>gi|156537616|ref|XP_001607747.1| PREDICTED: similar to ENSANGP00000009446 [Nasonia vitripennis]
          Length = 351

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 47/254 (18%), Positives = 79/254 (31%), Gaps = 39/254 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             I   RP+   +  G  +    L +F     A+     +++  GPPG+GKTT     AR
Sbjct: 35  PWIEKYRPQVFTDIVGNEDTVERLSIF-----AQHGNAPNLIIAGPPGVGKTTTILCFAR 89

Query: 77  ------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIHRLSIIVE 122
                       EL  +       V  K    A    NL      ++ +DE   ++   +
Sbjct: 90  ILLGPSFKDAVLELNASNERGIDVVRNKIKMFAQKKVNLAPGKHKIIILDEADSMTDGAQ 149

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           + L   ME +                   S      A      +  P+Q R  +      
Sbjct: 150 QALRRTMEIYS------------------STTRFALACNNSEKIIEPIQSRCAMIRYGKL 191

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA-GRLLRRVRDFAEVAHAKTI 241
            + + L  ++    +   ++ TD+    I   ++G  R A   L   V  F  V      
Sbjct: 192 SDAQVLAKVID-VCQKENVSYTDDGLEAIVFTAQGDMRQALNNLQSTVNGFNHVNGKNVF 250

Query: 242 TREIADAALLRLAI 255
                   LL   +
Sbjct: 251 KVCDEPHPLLVKNM 264


>gi|77408841|ref|ZP_00785568.1| DNA polymerase III, gamma and tau subunits [Streptococcus
           agalactiae COH1]
 gi|77172527|gb|EAO75669.1| DNA polymerase III, gamma and tau subunits [Streptococcus
           agalactiae COH1]
          Length = 554

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 52/259 (20%), Positives = 92/259 (35%), Gaps = 27/259 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     R +T +E  GQ    + LK  + + K         LF GP G GKT+ A++ A+
Sbjct: 4   ALYRKYRSQTFDEMVGQSVISTTLKQAVSSKKISHAY----LFSGPRGTGKTSAAKIFAK 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +    +    P      D+   +TN    DV+ ID      +  +  I ++  Y     
Sbjct: 60  AMNCPNQVNGEPCNHC--DICRDITNGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSRA 117

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQD---RFGIPIR 179
                ++ E             ++++        I ATT +  +   +     RF     
Sbjct: 118 TYKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAI 177

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
                 + L  I+ + A    ++   +A   +A R+ G  R A  +L +    A+  H  
Sbjct: 178 KLLAIRDHLAQILDKEA----ISYDLDALTLVARRAEGGMRDALSILDQALSLAKDNHIS 233

Query: 240 TITREIADAALLRLAIDKM 258
               E    ++   AID  
Sbjct: 234 LDVAEEITGSISLSAIDDY 252


>gi|317052107|ref|YP_004113223.1| DNA polymerase III subunits gamma and tau [Desulfurispirillum
           indicum S5]
 gi|316947191|gb|ADU66667.1| DNA polymerase III, subunits gamma and tau [Desulfurispirillum
           indicum S5]
          Length = 548

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 86/249 (34%), Gaps = 29/249 (11%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RPRT  E  GQ      L   I   +        ++F GP G+GKT++A+++A+ L
Sbjct: 7   ARKYRPRTFAEVVGQQHISRTLLNSIRGGRLAHA----LIFNGPRGVGKTSMARILAKSL 62

Query: 79  GVNFRSTSGP----VIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAM 129
                    P        A D  A L      DV+ ID      I  +  ++EE+ Y   
Sbjct: 63  NCMAPVEGEPCGTCENCVAIDQGAFL------DVVEIDAASNRGIDSMKTLIEEVDYAPA 116

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                  ++ E             ++++        + ATT +  +   +  R       
Sbjct: 117 MGQVKVYIIDEFHMLTREAFNAFLKTLEEPPPHTVFVLATTDLHKVNPTILSRCQRHDFR 176

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
                E ++ +        G+A   +A   IA  S G  R A  +L RV  +     +  
Sbjct: 177 RIPRDEMVQALAH-ILGNEGIAFETDALQIIATTSEGCMRDAESILDRVVSYCGERISAA 235

Query: 241 ITREIADAA 249
              E+   A
Sbjct: 236 DVMELVGIA 244


>gi|282863500|ref|ZP_06272559.1| DNA polymerase III, subunits gamma and tau [Streptomyces sp. ACTE]
 gi|282561835|gb|EFB67378.1| DNA polymerase III, subunits gamma and tau [Streptomyces sp. ACTE]
          Length = 774

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 59/175 (33%), Gaps = 26/175 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP +  E  GQ      L+  +   +         LF GP G GKTT A+++AR
Sbjct: 13  ALYRRYRPESFAEVIGQEHVTDPLQQALRNNRVNHAY----LFSGPRGCGKTTSARILAR 68

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR----DVLFIDEIHRLSII------VEEILY 126
            L        GP     G+  +      +     DV+ ID      +        +    
Sbjct: 69  CLNCE----QGPTPTPCGECQSCQDLARNGPGSIDVIEIDAASHGGVDDARDLREKAFFG 124

Query: 127 PAMEDFQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           PA   +++ ++         G     + V+        I ATT    +   ++ R
Sbjct: 125 PASSRYKIYIIDEAHMVTPAGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSR 179


>gi|134302702|ref|YP_001122670.1| DNA polymerase III, gamma/tau subunits [Francisella tularensis
           subsp. tularensis WY96-3418]
 gi|134050479|gb|ABO47550.1| DNA polymerase III subunit gamma/tau [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 546

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 79/249 (31%), Gaps = 57/249 (22%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP++  E  GQ  A ++L   +E  K         LF G  G+GKTTL +++A+
Sbjct: 5   ALARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAY----LFTGTRGVGKTTLGRLLAK 60

Query: 77  ELGVNF------------------------RSTSGPVIAKAGDLAALLTNLE------DR 106
            L                                        +   +L N++        
Sbjct: 61  CLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRY 120

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164
            V  IDE+H LS      L   +E+    +  ++      +     LSR   +       
Sbjct: 121 KVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQ 180

Query: 165 LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGR 224
                              +I+D   I+        +   +++   IA  ++G+ R A  
Sbjct: 181 A------------------DIKDQLKII---LAKENINSDEQSLEYIAYHAKGSLRDALS 219

Query: 225 LLRRVRDFA 233
           LL +   F 
Sbjct: 220 LLDQAISFC 228


>gi|56460949|ref|YP_156230.1| DNA polymerase III, gamma/tau subunits [Idiomarina loihiensis L2TR]
 gi|56179959|gb|AAV82681.1| DNA polymerase III, gamma/tau subunits [Idiomarina loihiensis L2TR]
          Length = 681

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 52/259 (20%), Positives = 81/259 (31%), Gaps = 59/259 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP    E  GQ      L+  ++      + L H  LF G  G+GKTT+A+++A+ L   
Sbjct: 11  RPSQFAEVVGQQHVLKPLEHALD-----KQRLHHAYLFTGTRGVGKTTIARILAKALNCE 65

Query: 82  ------------------------FRSTSGPVIAKAGDLAALLTNLEDRD------VLFI 111
                                             K  D   LL N++ R       V  I
Sbjct: 66  EGITATPCGKCSACLEIEQGRFVDLLEIDAASRTKVEDTRELLDNVQYRPTRGRYKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSRHSFNALLKTLEE------------------PPEHVKFLLATTDPQKLPVTIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L     +D+   +        +    EA   +A  +RG+ R A  L     D
Sbjct: 168 SRC-LQFNLKALSNDDITQQLSYVLSQEQVQADSEALPLLARSARGSMRDALSL----TD 222

Query: 232 FAEVAHAKTITREIADAAL 250
            A      +++ +     L
Sbjct: 223 QAIAQGGGSVSIDSVRRML 241


>gi|332871361|ref|ZP_08439905.1| DNA polymerase III, subunit gamma and tau [Acinetobacter baumannii
           6013113]
 gi|332731551|gb|EGJ62838.1| DNA polymerase III, subunit gamma and tau [Acinetobacter baumannii
           6013113]
          Length = 680

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 82/257 (31%), Gaps = 53/257 (20%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RPR   E  GQ          + +A  R       LF G  G+GKTT+A+++A+ L
Sbjct: 6   ARKYRPRNFNELVGQNHV----SRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCL 61

Query: 79  GVNFRSTS------------------------GPVIAKAGDLAALLTNL------EDRDV 108
                 TS                             K  D   LL N+          V
Sbjct: 62  NCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKV 121

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
             IDE+H LS      L   +E+                         + ATT    L  
Sbjct: 122 YLIDEVHMLSTHSFNALLKTLEE------------------PPEHVKFLFATTDPQKLPI 163

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            +  R  +   L    ++++   +    +   +    +A  +IA  ++G+ R A  L  +
Sbjct: 164 TVISRC-LQFTLRPLAVDEITKHLGAILEKEQITADQDAIWQIAESAQGSLRDALSLTDQ 222

Query: 229 VRDFAEVAHAKTITREI 245
              + + A      +E+
Sbjct: 223 AIAYGQGAVHHQDVKEM 239


>gi|315633993|ref|ZP_07889282.1| DNA polymerase III, gamma/tau subunit DnaX [Aggregatibacter segnis
           ATCC 33393]
 gi|315477243|gb|EFU67986.1| DNA polymerase III, gamma/tau subunit DnaX [Aggregatibacter segnis
           ATCC 33393]
          Length = 681

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 47/239 (19%), Positives = 75/239 (31%), Gaps = 43/239 (17%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGV- 80
           RP+T  +  GQ    + L     A   R   L H  LF G  G+GKT++A++ A+ L   
Sbjct: 11  RPKTFADVVGQQHILTAL-----ANGLRENRLHHAYLFSGTRGVGKTSIARLFAKGLNCV 65

Query: 81  -----------------------NFRSTSGPVIAKAGDLAALLTNLEDRDVL------FI 111
                                  +          K  D   LL N++ + VL       I
Sbjct: 66  NGVTAEPCGVCEHCKAIEEGNFIDLIEIDAASRTKVEDTRELLDNVQYKPVLGRYKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+H LS      L   +E+    +  ++      +     LSR              + 
Sbjct: 126 DEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPHKLPVTILSRCMQFHLKALEQ---SQ 182

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRG--TPRIAGRLL 226
           + +  G  +       E L       A    +  +     +    S G  T  I   +L
Sbjct: 183 IAEHLGYILNQEQIPFESLALDKLASAAQGSIRDSLSLTDQAIAMSNGNVTLNIVNEML 241


>gi|332850916|ref|ZP_08433069.1| DNA polymerase III, subunit gamma and tau [Acinetobacter baumannii
           6013150]
 gi|332730351|gb|EGJ61673.1| DNA polymerase III, subunit gamma and tau [Acinetobacter baumannii
           6013150]
          Length = 682

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 82/257 (31%), Gaps = 53/257 (20%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RPR   E  GQ          + +A  R       LF G  G+GKTT+A+++A+ L
Sbjct: 6   ARKYRPRNFNELVGQNHV----SRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCL 61

Query: 79  GVNFRSTS------------------------GPVIAKAGDLAALLTNL------EDRDV 108
                 TS                             K  D   LL N+          V
Sbjct: 62  NCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKV 121

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
             IDE+H LS      L   +E+                         + ATT    L  
Sbjct: 122 YLIDEVHMLSTHSFNALLKTLEE------------------PPEHVKFLFATTDPQKLPI 163

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            +  R  +   L    ++++   +    +   +    +A  +IA  ++G+ R A  L  +
Sbjct: 164 TVISRC-LQFTLRPLAVDEITKHLGAILEKEQITADQDAIWQIAESAQGSLRDALSLTDQ 222

Query: 229 VRDFAEVAHAKTITREI 245
              + + A      +E+
Sbjct: 223 AIAYGQGAVHHQDVKEM 239


>gi|294784544|ref|ZP_06749833.1| DNA polymerase III, gamma and tau subunit [Fusobacterium sp.
           3_1_27]
 gi|294487760|gb|EFG35119.1| DNA polymerase III, gamma and tau subunit [Fusobacterium sp.
           3_1_27]
          Length = 484

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 50/242 (20%), Positives = 100/242 (41%), Gaps = 22/242 (9%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVAREL 78
              RP +  E +G+ E   +LK+ ++      +++ H  LF GP G+GKTT+A+++A+ L
Sbjct: 7   RKYRPSSFSEVSGENEIVKSLKLSLK-----NKSMAHAYLFSGPRGVGKTTIARLIAKGL 61

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQ 133
                  +G    +  +  A+       D++ ID      I  +  + E+I Y  +E  +
Sbjct: 62  NCLNLKENGEPCNECKNCKAINEG-RFSDLIEIDAASNRSIDEIRSLKEKINYQPVEGLK 120

Query: 134 LDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
              ++ E             ++++   +    I ATT +  +   +  R          +
Sbjct: 121 KVYIIDEAHMLTKEAFNALLKTLEEPPAHVMFILATTELEKILPTIISRCQ-RYDFKPLD 179

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +E++K  ++   K   L++TD+    I   S G+ R +  +L R+   A          E
Sbjct: 180 LEEMKAGLEHILKEENLSMTDDVYSVIYENSSGSMRDSISILERLMVTANGKEIDLKIAE 239

Query: 245 IA 246
             
Sbjct: 240 DT 241


>gi|229165012|ref|ZP_04292810.1| DNA polymerase III subunit gamma/tau [Bacillus cereus AH621]
 gi|228618464|gb|EEK75491.1| DNA polymerase III subunit gamma/tau [Bacillus cereus AH621]
          Length = 562

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 68/208 (32%), Gaps = 40/208 (19%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  E+  GQ      L    + A  + +A    LF GP G GKTT+A+V A+ +    
Sbjct: 11  RPQKFEDVVGQKHVTKTL----QNALLQEKASHAYLFSGPRGTGKTTIAKVFAKAINCEH 66

Query: 83  ------------------------RSTSGPVIAKAGDLAALLTNLE------DRDVLFID 112
                                               ++  +   ++         V  ID
Sbjct: 67  APVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVGYKVYIID 126

Query: 113 EIHRLSIIVEEILYPAMED--FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           E+H LS+     L   +E+    +  ++      +     +SR              N +
Sbjct: 127 EVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPATIISRCQRFEFRKIS---VNDI 183

Query: 171 QDRFGIPIRLNFYEIEDLK-TIVQRGAK 197
            +R    +     ++ED    IV R A+
Sbjct: 184 VERLSTVVTNEGTQVEDEALQIVARAAE 211


>gi|215483116|ref|YP_002325323.1| DNA polymerase III, subunits gamma and tau [Acinetobacter baumannii
           AB307-0294]
 gi|213988763|gb|ACJ59062.1| DNA polymerase III, subunits gamma and tau [Acinetobacter baumannii
           AB307-0294]
          Length = 700

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 82/257 (31%), Gaps = 53/257 (20%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RPR   E  GQ          + +A  R       LF G  G+GKTT+A+++A+ L
Sbjct: 6   ARKYRPRNFNELVGQNHV----SRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCL 61

Query: 79  GVNFRSTS------------------------GPVIAKAGDLAALLTNL------EDRDV 108
                 TS                             K  D   LL N+          V
Sbjct: 62  NCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKV 121

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
             IDE+H LS      L   +E+                         + ATT    L  
Sbjct: 122 YLIDEVHMLSTHSFNALLKTLEE------------------PPEHVKFLFATTDPQKLPI 163

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            +  R  +   L    ++++   +    +   +    +A  +IA  ++G+ R A  L  +
Sbjct: 164 TVISRC-LQFTLRPLAVDEITKHLGAILEKEQITADQDAIWQIAESAQGSLRDALSLTDQ 222

Query: 229 VRDFAEVAHAKTITREI 245
              + + A      +E+
Sbjct: 223 AIAYGQGAVHHQDVKEM 239


>gi|213158428|ref|YP_002319726.1| DNA polymerase III subunit tau [Acinetobacter baumannii AB0057]
 gi|213057588|gb|ACJ42490.1| DNA polymerase III subunit tau [Acinetobacter baumannii AB0057]
          Length = 686

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 82/257 (31%), Gaps = 53/257 (20%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RPR   E  GQ          + +A  R       LF G  G+GKTT+A+++A+ L
Sbjct: 6   ARKYRPRNFNELVGQNHV----SRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCL 61

Query: 79  GVNFRSTS------------------------GPVIAKAGDLAALLTNL------EDRDV 108
                 TS                             K  D   LL N+          V
Sbjct: 62  NCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKV 121

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
             IDE+H LS      L   +E+                         + ATT    L  
Sbjct: 122 YLIDEVHMLSTHSFNALLKTLEE------------------PPEHVKFLFATTDPQKLPI 163

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            +  R  +   L    ++++   +    +   +    +A  +IA  ++G+ R A  L  +
Sbjct: 164 TVISRC-LQFTLRPLAVDEITKHLGAILEKEQITADQDAIWQIAESAQGSLRDALSLTDQ 222

Query: 229 VRDFAEVAHAKTITREI 245
              + + A      +E+
Sbjct: 223 AIAYGQGAVHHQDVKEM 239


>gi|169795628|ref|YP_001713421.1| DNA polymerase III, tau and gamma subunits (DNA elongation factor
           III) [Acinetobacter baumannii AYE]
 gi|169148555|emb|CAM86421.1| DNA polymerase III, tau and gamma subunits (DNA elongation factor
           III) [Acinetobacter baumannii AYE]
          Length = 710

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 82/257 (31%), Gaps = 53/257 (20%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RPR   E  GQ          + +A  R       LF G  G+GKTT+A+++A+ L
Sbjct: 6   ARKYRPRNFNELVGQNHV----SRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCL 61

Query: 79  GVNFRSTS------------------------GPVIAKAGDLAALLTNL------EDRDV 108
                 TS                             K  D   LL N+          V
Sbjct: 62  NCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKV 121

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
             IDE+H LS      L   +E+                         + ATT    L  
Sbjct: 122 YLIDEVHMLSTHSFNALLKTLEE------------------PPEHVKFLFATTDPQKLPI 163

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            +  R  +   L    ++++   +    +   +    +A  +IA  ++G+ R A  L  +
Sbjct: 164 TVISRC-LQFTLRPLAVDEITKHLGAILEKEQITADQDAIWQIAESAQGSLRDALSLTDQ 222

Query: 229 VRDFAEVAHAKTITREI 245
              + + A      +E+
Sbjct: 223 AIAYGQGAVHHQDVKEM 239


>gi|126731114|ref|ZP_01746922.1| DNA polymerase III subunits gamma and tau [Sagittula stellata E-37]
 gi|126708416|gb|EBA07474.1| DNA polymerase III subunits gamma and tau [Sagittula stellata E-37]
          Length = 587

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 54/258 (20%), Positives = 90/258 (34%), Gaps = 26/258 (10%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
            +           RP T  +  GQ      LK    A +         +  G  G GKTT
Sbjct: 2   SDQPAYQVLARKYRPETFADLVGQDAMVRTLKNAFAADRIAQA----FIMTGIRGTGKTT 57

Query: 70  LAQVVARELGV-NFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSI-----IV 121
            A+++A+ +         GP     G     +  +E R  DV+ +D   R  +     I+
Sbjct: 58  TARIIAKGMNCIGPDGNGGPTTDPCGKCEHCVAIMEGRHVDVMEMDAASRTGVGDIREII 117

Query: 122 EEILYPAMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E + Y A        ++ E             ++++   +    I ATT +  +   +  
Sbjct: 118 ESVHYRAASARYKIYIIDEVHMLSKSAFNALLKTLEEPPAHVKFIFATTEIRQVPVTVLS 177

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R      L   E E +  ++++ A      +TDEA   +   + G+ R A  LL    D 
Sbjct: 178 RCQ-RFDLRRIEPEIMIALLRKIATSEAAEITDEALALVTRAAEGSARDATSLL----DQ 232

Query: 233 AEVAHAKTITREIADAAL 250
           A    A   T +   A L
Sbjct: 233 AISHGAGETTADQVRAML 250


>gi|159900437|ref|YP_001546684.1| DNA polymerase III subunits gamma and tau [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159893476|gb|ABX06556.1| DNA polymerase III, subunits gamma and tau [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 575

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 86/228 (37%), Gaps = 24/228 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           R +T ++  GQ      L+  I A +         LF GP G+GKT+ A+++++ +    
Sbjct: 11  RSQTFDDLVGQSHIVQALRNAIAANRIGHAY----LFTGPRGVGKTSAARILSKAVNCE- 65

Query: 83  RSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSI------IVEEILYPAMEDFQL 134
              S P +   G+ +      E R  DV+ +D     S+      I +    P     ++
Sbjct: 66  --QSDPRLRPCGECSTCRAIAEGRAVDVIEMDAASHTSVDDAREIIEKVQFRPTQFRKKV 123

Query: 135 DLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++               ++++        I ATT    +   +  R       N + I 
Sbjct: 124 YVIDEVHMLSTAAFNALLKTLEEPPDHAMFILATTEFHKVPATILSRCQ-RFVFNRHTIA 182

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
           +    ++  A   G+ +    A  +A  + G+ R A  +L ++  + E
Sbjct: 183 NTIAHLEWVAGEEGVFLEPGVAEAVARAATGSMRDAMSILDQLMGYGE 230


>gi|325208389|gb|ADZ03841.1| DNA polymerase III, subunits gamma and tau [Neisseria meningitidis
           NZ-05/33]
          Length = 735

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 49/303 (16%), Positives = 90/303 (29%), Gaps = 63/303 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T  +  GQ      L+  ++  +     L H  L  G  G+GKTT+A+++A+ L   
Sbjct: 40  RPKTFSDLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCE 94

Query: 82  FRS------------------------TSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                                ++  +L N +         V  I
Sbjct: 95  NAQHGEPCGVCESCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYII 154

Query: 112 DEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+H LS      +   +E+    +  ++      +     LSR                
Sbjct: 155 DEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNM------- 207

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
                           + +   +        +A    A   +   + G+ R A  LL + 
Sbjct: 208 --------------TAQQVADHLAHVLDSEKIAYAPPALQLLGRAAAGSMRDALSLLDQA 253

Query: 230 RDFAEVAHAKTITREIADAALLRLAIDKM-GFDQLDLRYLTMIARNFGGGPVGIETISAG 288
                 + A+   R++  A   +   + + G    D   L   A+      VG +     
Sbjct: 254 IAMGSGSVAEQDVRQMIGAVDKQYLYELLTGIVNQDGEALLAKAQEMAACAVGFDN---A 310

Query: 289 LSE 291
           L E
Sbjct: 311 LGE 313


>gi|255527108|ref|ZP_05393996.1| DNA polymerase III, subunits gamma and tau [Clostridium
           carboxidivorans P7]
 gi|296187897|ref|ZP_06856290.1| DNA polymerase III, subunit gamma and tau [Clostridium
           carboxidivorans P7]
 gi|255509210|gb|EET85562.1| DNA polymerase III, subunits gamma and tau [Clostridium
           carboxidivorans P7]
 gi|296047518|gb|EFG86959.1| DNA polymerase III, subunit gamma and tau [Clostridium
           carboxidivorans P7]
          Length = 541

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 53/252 (21%), Positives = 83/252 (32%), Gaps = 29/252 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA------- 75
           RPR  ++  GQ      LK  I   +         LF G  G GKT+ A+++A       
Sbjct: 11  RPRIFDDVVGQKHITVTLKNQIRNNRIAHAY----LFSGTRGTGKTSTAKILAKAVNCTD 66

Query: 76  -------RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
                   E  +  +  SG  I      AA    LED      D I  +    +E  Y  
Sbjct: 67  LRDGEPCNECDMCKKINSGISIDVIEMDAASKRRLED----IKDVIENVKYPPQEGKYKV 122

Query: 129 MEDFQLDLMVGE--GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
               ++ ++  E      ++++   S    I ATT    L   +  R            +
Sbjct: 123 YIMDEVHMLTAEAVNAFLKTLEEPPSNVIFILATTDPQKLPVTILSRCQKFDFRRIKSSD 182

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
                ++   K  G+   D +   IA  S G  R A  +L    D A       +  E  
Sbjct: 183 IFGR-MRDIVKEQGIFADDRSLNLIARMSDGAMRDALSIL----DQAISMGGGKVEYESV 237

Query: 247 DAALLRLAIDKM 258
            + L  +  + M
Sbjct: 238 VSMLGLVTNENM 249


>gi|168050884|ref|XP_001777887.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162670752|gb|EDQ57315.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 550

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 57/222 (25%), Positives = 87/222 (39%), Gaps = 23/222 (10%)

Query: 45  EAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------------VIAK 92
           EAA         +L  GPPG GKT++   VARE   +F S SG             V+ +
Sbjct: 35  EAASLGLRWPKGLLLYGPPGTGKTSVVHAVARECNAHFTSLSGASVHKAFAGESEKVLRE 94

Query: 93  AGDLAALLTNLEDRDVLFIDEIHRL-----SIIVEEILYPAMEDFQLDLMVGEGPSARSV 147
           A   AAL   +    ++FIDEI  +     S   +E    A     L LM G G S+++ 
Sbjct: 95  AFSKAALEAAIGRPAIIFIDEIDTMCPPRDSRRQQETRLVAQ---LLTLMDGIG-SSKAG 150

Query: 148 KINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTD 205
               SR  ++AAT RV  + + L+   RF   I +      +   I++  ++   L  + 
Sbjct: 151 LAGTSRVVVVAATNRVNSIDSALRRPGRFDREIAVPPPNAHERHAILRLHSRKFPLDTSV 210

Query: 206 EAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           +      M +         L R     A   +      E+ D
Sbjct: 211 DLVAVAKMCNGYVGADLQALCREAAMSALSHNEGVRPVEMKD 252



 Score = 42.8 bits (99), Expect = 0.083,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 41/106 (38%), Gaps = 16/106 (15%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALD--------HVLFVGPPGLGKTTLAQVVARE 77
           + ++  G  E    L+  +E      +AL          VL  GPPG  KTTLA+  A  
Sbjct: 276 SWDDIGGLHEVKKRLQQAVEWPIKHVDALTRLGIRPARGVLLHGPPGCSKTTLAKAAAHS 335

Query: 78  LGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DVLFIDEIH 115
                 S SG  +     G+  ALL +   +       ++F DE  
Sbjct: 336 SQATLFSLSGADLYSMYVGEGEALLRDTFRQARLAAPSIIFFDEAD 381


>gi|157786766|ref|NP_001099339.1| replication factor C subunit 4 [Rattus norvegicus]
 gi|149019930|gb|EDL78078.1| replication factor C (activator 1) 4 (predicted), isoform CRA_a
           [Rattus norvegicus]
 gi|195540022|gb|AAI68166.1| Rfc4 protein [Rattus norvegicus]
          Length = 364

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 76/234 (32%), Gaps = 45/234 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+ ++E   Q E  + LK  +E A      L ++LF GPPG GKT+     AR
Sbjct: 39  PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGAD-----LPNLLFYGPPGTGKTSTILAAAR 93

Query: 77  -------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD--------VLFIDEIH 115
                        EL  +       V  K  + A L  +    D        ++ +DE  
Sbjct: 94  ELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEAD 153

Query: 116 RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
            ++   +  L   ME                     +RF        V  +  PL  R  
Sbjct: 154 SMTSAAQAALRRTMEKESKT----------------TRF--CLICNYVSRIIEPLTSRCS 195

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
              R      +  +  +   A+   + + DE    +   S G  R A   L+  
Sbjct: 196 -KFRFKPLSDKIQQKRLLDIAEKENVKIGDEEIAYLVRISEGDLRKAITFLQSA 248


>gi|332559172|ref|ZP_08413494.1| DNA polymerase III subunits gamma and tau [Rhodobacter sphaeroides
           WS8N]
 gi|332276884|gb|EGJ22199.1| DNA polymerase III subunits gamma and tau [Rhodobacter sphaeroides
           WS8N]
          Length = 582

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 57/266 (21%), Positives = 90/266 (33%), Gaps = 27/266 (10%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+T  +  GQ      LK    A +         +  G  G+GKTT A+++A+ L
Sbjct: 13  ARKYRPQTFADLIGQDAMVRTLKNAFAADRIAHA----FVMTGVRGVGKTTTARIIAKGL 68

Query: 79  GV-NFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEIL-----YPAME 130
                  T GP     G         E R  DV+ +D   R  +     +     Y A  
Sbjct: 69  NCVGPDGTGGPTTEPCGQCEPCRAIAEGRHVDVMEMDAASRTGVGDIREIIDSVHYRAAS 128

Query: 131 DFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
                 ++ E             ++++   +    I ATT +  +   +  R      L 
Sbjct: 129 ARYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLSRCQ-RFDLK 187

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
             E E +   + R A   G  +T +A   I   + G+ R A  L+    D A    A   
Sbjct: 188 RIEPEVMMAHLSRVAGKEGAELTRDALALITRAAEGSVRDAMSLM----DQAIAHGAGET 243

Query: 242 TREIADAALLRLAIDKMGFDQLDLRY 267
           T +   A L      ++  D  DL  
Sbjct: 244 TADQVRAMLGLADRGRV-LDLFDLVM 268


>gi|328906727|gb|EGG26499.1| DNA polymerase III, subunit gamma and tau [Propionibacterium sp.
           P08]
          Length = 968

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 64/190 (33%), Gaps = 27/190 (14%)

Query: 3   DREGLLSRNVSQEDADI-SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           D + +   ++ +    +    RP T +E  G+      LK  I   +         LF G
Sbjct: 104 DPDSIPDDDLPEPPLALYRRYRPETFDEVIGEDHVIEPLKRAILNNRVNHAY----LFSG 159

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR----DVLFID----- 112
           P G GKTT A+++AR L  +     GP +   G   +            DV+ ID     
Sbjct: 160 PRGCGKTTTARILARALNCD----QGPTLTPCGKCQSCRDLACGGPGSIDVIEIDAASHG 215

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRV 163
            +     + E   +  +       ++ E             + V+        I ATT  
Sbjct: 216 GVDDARDLRERAFFAPVHSRYKIYIIDEAHMVTPQGFNALLKLVEEPPPHVKFIFATTEP 275

Query: 164 GLLTNPLQDR 173
             +   ++ R
Sbjct: 276 EKVIGTIRSR 285


>gi|307179094|gb|EFN67566.1| Replication factor C subunit 2 [Camponotus floridanus]
          Length = 349

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 50/258 (19%), Positives = 88/258 (34%), Gaps = 39/258 (15%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           SQ    I   RP+   +  G  +  S L VF     A+     +++  GPPG+GKTT   
Sbjct: 33  SQNLPWIEKYRPQVFSDIVGNEDTVSRLAVF-----AQHGNTPNIIIAGPPGVGKTTTIL 87

Query: 73  VVAR------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIHRLS 118
            +AR            EL  +       V  K    A    NL      ++ +DE   ++
Sbjct: 88  CLARILLGPAFKEAVLELNASNERGIDVVRNKIKMFAQKKVNLPKGKHKIIILDEADSMT 147

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
              ++ L   ME +           + + +  L       A      +  P+Q R  +  
Sbjct: 148 DGAQQALRRTMEIY-----------SHTTRFAL-------ACNNTEEIIEPIQSRCAMLR 189

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD-FAEVAH 237
                + + L  +++   +   L+ TD+    I   ++G  R A   L+   + F  V  
Sbjct: 190 YGKLTDAQILAKVLE-VCEKEKLSYTDDGMEAIVFTAQGDMRQALNNLQSTYNGFNHVNG 248

Query: 238 AKTITREIADAALLRLAI 255
                       L+   +
Sbjct: 249 ENVFKVCDEPHPLIVKEM 266


>gi|257057604|ref|YP_003135436.1| DNA polymerase III, subunit gamma/tau [Saccharomonospora viridis
           DSM 43017]
 gi|256587476|gb|ACU98609.1| DNA polymerase III, subunit gamma/tau [Saccharomonospora viridis
           DSM 43017]
          Length = 690

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 50/265 (18%), Positives = 86/265 (32%), Gaps = 25/265 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T  E  GQ      L+  + + +         LF GP G GKT+ A+++AR
Sbjct: 4   ALYRKYRPATFAEVVGQEHVTEPLRTALASGRINHAY----LFSGPRGCGKTSSARIMAR 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALL-TNLEDRDVLFID-----EIHRLSIIVEEILYPAME 130
            L      T  P   K G   AL        DV  +D      +     + +   Y   E
Sbjct: 60  SLNCVEGPTPDP-CGKCGPCEALAPEGPGSVDVTELDAASHGGVDDARELRDRAFYAPAE 118

Query: 131 DFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
                 ++ E             + V+        I ATT    +   ++ R        
Sbjct: 119 SRYRVFIIDEAHMVTPQGFNALLKIVEEPPEHLIFIFATTEPDKVLTTIRSR-THHYPFR 177

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
               + ++ +++R     G+ V       +     G+ R    +L ++   A        
Sbjct: 178 LIPPKAMRELLERNVAAEGIPVEPAVYPLVIRAGGGSARDTQSVLDQLLAGAGPEGVTYE 237

Query: 242 TR----EIADAALLRLAIDKMGFDQ 262
                  + D+AL+   +D +  D 
Sbjct: 238 RAVALLGVTDSALIDSMVDALAADD 262


>gi|315230689|ref|YP_004071125.1| replication factor C large subunit [Thermococcus barophilus MP]
 gi|315183717|gb|ADT83902.1| replication factor C large subunit [Thermococcus barophilus MP]
          Length = 503

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 63/198 (31%), Gaps = 12/198 (6%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+ L E   Q +A   ++ +I+           +L  GPPG GKTT    +A 
Sbjct: 4   PWVEKYRPKRLREIVNQRQALEKVEAWIKQWVHGTPKKKALLLAGPPGSGKTTTVYALAN 63

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAM 129
           E        +         +   L            R ++F+DE   +       +   +
Sbjct: 64  EYKFEVIELNASDERTFEKIRRYLDAAYTMDIFGRRRKLIFLDEADNIEPSGAHEIAKLI 123

Query: 130 EDFQLDLMVGEGPSARSVK--INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           +  +  +++             N +        T+  ++    +    I     F   E 
Sbjct: 124 DRARNPIIMAANKYWEVPAEIRNKAEVVEYKRLTQRDIMQALFR---IIKAEGIFVPKEI 180

Query: 188 LKTIVQRGAKLTGLAVTD 205
           +  I +R +     A+ D
Sbjct: 181 VAEIAKRASGDLRAAIND 198


>gi|194700788|gb|ACF84478.1| unknown [Zea mays]
 gi|194706416|gb|ACF87292.1| unknown [Zea mays]
          Length = 339

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 83/244 (34%), Gaps = 45/244 (18%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           ++  V      +   RPR +++   Q E    L   ++ A      L H+LF GPPG GK
Sbjct: 1   MAPLVPMSQPWVEKYRPRQVKDVAHQEEVIRVLNNTLQTAD-----LPHMLFYGPPGTGK 55

Query: 68  TTLAQVVAR-------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------- 106
           TT A  +A              EL  +       V  K  + AA+      +        
Sbjct: 56  TTTALAIAYQLYGPELYKSRVLELNASDDRGINVVRTKIKNFAAVAVGTARKAGYPCPPY 115

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
            ++ +DE   ++   +  L    E +                  ++RF  I     +  +
Sbjct: 116 KIIILDEADSMTEDAQNALRRTTETYS----------------KVTRFFFIC--NYISRI 157

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
             PL  R     R      E + + +       GL +  +A   +++ S+G  R A   L
Sbjct: 158 IEPLASRCA-KFRFKPLSEEVMSSRIMHICNEEGLNLNAQAMSTLSVISQGDLRRAITYL 216

Query: 227 RRVR 230
           +   
Sbjct: 217 QSAA 220


>gi|149909474|ref|ZP_01898128.1| Hypothetical DNA polymerase III, subunits gamma and tau [Moritella
           sp. PE36]
 gi|149807379|gb|EDM67330.1| Hypothetical DNA polymerase III, subunits gamma and tau [Moritella
           sp. PE36]
          Length = 814

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 63/334 (18%), Positives = 99/334 (29%), Gaps = 69/334 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP   ++  GQ    + L   +E      + L H  L  G  G+GKTT+A++ A+ L   
Sbjct: 11  RPHNFQQVVGQQHVLTALVNALE-----QDRLHHAYLLSGTRGVGKTTIARIFAKSLNCE 65

Query: 82  FRSTS------------------------GPVIAKAGDLAALLTNLEDRD------VLFI 111
              TS                             K  D   LL N++ +       V  I
Sbjct: 66  KGITSTPCGECSTCVEIDQGCYVDLLEIDAASRTKVEDTRELLDNVQYKPARGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSKHSFNALLKTLEE------------------PPEYVKFLLATTDPQKLPITIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L     E +   +              A   IA  + G+ R A  L     D
Sbjct: 168 SRC-LQFHLKCLTTEQISQQLVHILSREHCQYELSALNSIAKAADGSMRDALSL----TD 222

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMG-FDQLD-LRYLTMIARNFGGGPVGIETISAGL 289
            A    A  +        L +  +D +G  D    L+ L +I        +      + L
Sbjct: 223 QALSHGAGEV--------LYQTVLDMLGTLDHSHMLQLLRLIVSGDANKCMAKIAEVSSL 274

Query: 290 SEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIA 323
               D +   +   + +    Q  P   +    A
Sbjct: 275 GPDFDQLHVELASLLHRIAMAQILPSSVVDTEHA 308


>gi|169626367|ref|XP_001806584.1| hypothetical protein SNOG_16470 [Phaeosphaeria nodorum SN15]
 gi|111055048|gb|EAT76168.1| hypothetical protein SNOG_16470 [Phaeosphaeria nodorum SN15]
          Length = 393

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 83/225 (36%), Gaps = 12/225 (5%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
                   +   RP +L++  G  +  + +  F+++ +     L H+L  GPPG GKT+ 
Sbjct: 38  EAEDSLPWVEKYRPTSLDDVEGHKDIIATINKFVDSNR-----LPHLLLYGPPGTGKTST 92

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAAL-LTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
              +AR +  N       +   A D   + +   + +      +I   +    +      
Sbjct: 93  VLALARRIYGNKNMRQMVLELNASDDRGIDVVREQIKTFSSTKQIFSAAPKAGDSALATF 152

Query: 130 EDFQLDLMVGEGPSA-----RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           +   LD       +A     R ++   +             L+  L  R     R +  +
Sbjct: 153 KLIILDEADAMTATAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRC-TRFRFSPLK 211

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
            +D++ +V +  +   + +T +AA  +   S+G  R A  +L+  
Sbjct: 212 DQDIRNLVDKVIEDEKVNITQDAASSLVTLSKGDMRRALNVLQAC 256


>gi|120554533|ref|YP_958884.1| DNA polymerase III, subunits gamma and tau [Marinobacter aquaeolei
           VT8]
 gi|120324382|gb|ABM18697.1| DNA polymerase III, gamma subunit [Marinobacter aquaeolei VT8]
          Length = 637

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 81/227 (35%), Gaps = 27/227 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPRT E+  GQ      L   +E      + L H  LF G  G+GKTT+ +++AR L   
Sbjct: 11  RPRTFEDMVGQEHVLQALIHALE-----HQRLHHAYLFTGTRGVGKTTIGRLLARCLNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEIL-----YPAMEDFQL 134
              T  P     G+  +    LE+R  D++ ID   R  +     L     Y        
Sbjct: 66  TGITPNP----CGECDSCKEILENRFVDLIEIDAASRTGVDDMRELTDNVQYAPTRGRYK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             ++ E             ++++        + ATT    L   +  R  +   L     
Sbjct: 122 VYLIDEVHMLTNQSFNAFLKTLEEPPEHVKFLLATTDPQKLPVTVLSRC-LQFNLKRMTP 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           E +   ++       +   D A   +A  + G+ R A  L  +   F
Sbjct: 181 EHIVGHLKHVLTEEQIPFEDPALWLLARAADGSMRDALSLTDQAIAF 227


>gi|254713381|ref|ZP_05175192.1| DNA polymerase III subunits gamma and tau [Brucella ceti M644/93/1]
 gi|254716261|ref|ZP_05178072.1| DNA polymerase III subunits gamma and tau [Brucella ceti M13/05/1]
 gi|261218037|ref|ZP_05932318.1| DNA polymerase III gamma and tau [Brucella ceti M13/05/1]
 gi|261321113|ref|ZP_05960310.1| DNA polymerase III gamma and tau [Brucella ceti M644/93/1]
 gi|260923126|gb|EEX89694.1| DNA polymerase III gamma and tau [Brucella ceti M13/05/1]
 gi|261293803|gb|EEX97299.1| DNA polymerase III gamma and tau [Brucella ceti M644/93/1]
          Length = 602

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 90/248 (36%), Gaps = 25/248 (10%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+  ++  GQ      L+   E  +         +  G  G+GKTT A+++AR L
Sbjct: 14  ARKYRPQNFDDLIGQEPMVRTLRNAFETGRIAQAW----MLTGVRGVGKTTTARILARAL 69

Query: 79  GVNFRSTSGPVI--AKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
                +   P I  +  G+    +      DV+ +D      I  +  I+E++ Y  +  
Sbjct: 70  NYKTDTVDQPTIDLSTPGEHCQAIMEGRHVDVIEMDAASHTGIDDIREIIEQVRYRPVSA 129

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT +  +   +  R      L  
Sbjct: 130 RYKVYIIDEVHMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKVPITVLSRCQ-RFDLRR 188

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            E   L   ++R A+   + V D +   IA    G+ R +  +     D A    A ++T
Sbjct: 189 IESGTLAQHLRRIAEAEKIEVDDASLAMIARAGEGSARDSLSIF----DQAIAHGAGSVT 244

Query: 243 REIADAAL 250
            E   + L
Sbjct: 245 AEAVRSML 252


>gi|187932244|ref|YP_001892229.1| DNA polymerase III subunit gamma/tau [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187713153|gb|ACD31450.1| DNA polymerase III subunit gamma/tau [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 546

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 79/249 (31%), Gaps = 57/249 (22%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP++  E  GQ  A ++L   +E  K         LF G  G+GKTTL +++A+
Sbjct: 5   ALARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAY----LFTGTRGVGKTTLGRLLAK 60

Query: 77  ELGVNF------------------------RSTSGPVIAKAGDLAALLTNLE------DR 106
            L                                        +   +L N++        
Sbjct: 61  CLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRY 120

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164
            V  IDE+H LS      L   +E+    +  ++      +     LSR   +       
Sbjct: 121 KVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQ 180

Query: 165 LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGR 224
                              +I+D   I+        +   +++   IA  ++G+ R A  
Sbjct: 181 A------------------DIKDQLKII---LAKENINSDEQSLEYIAYHAKGSLRDALS 219

Query: 225 LLRRVRDFA 233
           LL +   F 
Sbjct: 220 LLDQAISFC 228


>gi|94500851|ref|ZP_01307377.1| DNA polymerase III subunits gamma and tau [Oceanobacter sp. RED65]
 gi|94426970|gb|EAT11952.1| DNA polymerase III subunits gamma and tau [Oceanobacter sp. RED65]
          Length = 658

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 46/243 (18%), Positives = 77/243 (31%), Gaps = 55/243 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+  ++  GQ      ++  I A     + L H  LF G  G+GKTT+A+++A+ L   
Sbjct: 11  RPQFFKDLVGQEHV---MRALINA--LDNQRLHHAYLFTGTRGVGKTTIARILAKCLNCE 65

Query: 82  FRSTS------------------------GPVIAKAGDLAALLTNLE------DRDVLFI 111
              +S                             K  D   +L N++         V  I
Sbjct: 66  QGISSEPCGTCQSCQEISQGRFVDLIEVDAASRTKVEDTREILDNVQYAPTRGRYKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSNSSFNALLKTLEE------------------PPPHVKFLLATTDPQKLPATIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L     E +   +Q       +   +     +   + G+ R A  L  +   
Sbjct: 168 SRC-LQFSLKNMTPERIVGYLQNVLAQESVEFEEPGLWLLGRAAEGSMRDALSLTDQAIS 226

Query: 232 FAE 234
           F +
Sbjct: 227 FGQ 229


>gi|296141683|ref|YP_003648926.1| DNA polymerase III subunits gamma/tau [Tsukamurella paurometabola
           DSM 20162]
 gi|296029817|gb|ADG80587.1| DNA polymerase III, subunits gamma and tau [Tsukamurella
           paurometabola DSM 20162]
          Length = 737

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 53/192 (27%), Gaps = 38/192 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T  E  GQ      L V +++ +         LF GP G GKT+ A+++AR
Sbjct: 2   ALYRKYRPATFAEVVGQEHVTEPLSVALDSGRINHAY----LFSGPRGCGKTSSARILAR 57

Query: 77  ELGVN--------------------------FRSTSGPVIAKAGDLAALLTNL------E 104
            L                                          D   L           
Sbjct: 58  SLNCEQGPTSTPCGVCNSCVALAPGGPGNLDVTEMDAASHGGVDDARELRDRAFYAPAES 117

Query: 105 DRDVLFIDEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTR 162
              V  +DE H ++      L   +E+    L  +       + +    SR         
Sbjct: 118 RYRVFIVDEAHMVTPQGFNALLKIVEEPPEHLIFIFATTEPEKVLTTIRSRTHHYPFRLL 177

Query: 163 VGLLTNPLQDRF 174
              +  PL ++ 
Sbjct: 178 APNVMRPLLEKI 189


>gi|17988191|ref|NP_540825.1| DNA polymerase III subunits gamma and tau [Brucella melitensis bv.
           1 str. 16M]
 gi|225851577|ref|YP_002731810.1| DNA polymerase III subunits gamma and tau [Brucella melitensis ATCC
           23457]
 gi|256045825|ref|ZP_05448701.1| DNA polymerase III subunits gamma and tau [Brucella melitensis bv.
           1 str. Rev.1]
 gi|256264911|ref|ZP_05467443.1| DNA polymerase III subunit gamma and tau [Brucella melitensis bv. 2
           str. 63/9]
 gi|260563116|ref|ZP_05833602.1| DNA polymerase III gamma and tau subunit [Brucella melitensis bv. 1
           str. 16M]
 gi|265992238|ref|ZP_06104795.1| DNA polymerase III gamma and tau [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|17983953|gb|AAL53089.1| DNA polymerase iii subunits gamma and tau [Brucella melitensis bv.
           1 str. 16M]
 gi|225639942|gb|ACN99855.1| DNA polymerase III, subunits gamma and tau [Brucella melitensis
           ATCC 23457]
 gi|260153132|gb|EEW88224.1| DNA polymerase III gamma and tau subunit [Brucella melitensis bv. 1
           str. 16M]
 gi|263003304|gb|EEZ15597.1| DNA polymerase III gamma and tau [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|263095396|gb|EEZ18997.1| DNA polymerase III subunit gamma and tau [Brucella melitensis bv. 2
           str. 63/9]
 gi|326408046|gb|ADZ65111.1| DNA polymerase III subunits gamma and tau [Brucella melitensis M28]
 gi|326537763|gb|ADZ85978.1| DNA polymerase III, subunits gamma and tau [Brucella melitensis
           M5-90]
          Length = 602

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 90/248 (36%), Gaps = 25/248 (10%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+  ++  GQ      L+   E  +         +  G  G+GKTT A+++AR L
Sbjct: 14  ARKYRPQNFDDLIGQEPMVRTLRNAFETGRIAQAW----MLTGVRGVGKTTTARILARAL 69

Query: 79  GVNFRSTSGPVI--AKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
                +   P I  +  G+    +      DV+ +D      I  +  I+E++ Y  +  
Sbjct: 70  NYKTDTVDQPTIDLSTPGEHCQAIMEGRHVDVIEMDAASHTGIDDIREIIEQVRYRPVSA 129

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT +  +   +  R      L  
Sbjct: 130 RYKVYIIDEVHMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKVPITVLSRCQ-RFDLRR 188

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            E   L   ++R A+   + V D +   IA    G+ R +  +     D A    A ++T
Sbjct: 189 IESGTLAQHLRRIAEAEKIEVDDASLAMIARAGEGSARDSLSIF----DQAIAHGAGSVT 244

Query: 243 REIADAAL 250
            E   + L
Sbjct: 245 AEAVRSML 252


>gi|289548682|ref|YP_003473670.1| DNA polymerase III subunits gamma and tau [Thermocrinis albus DSM
           14484]
 gi|289182299|gb|ADC89543.1| DNA polymerase III, subunits gamma and tau [Thermocrinis albus DSM
           14484]
          Length = 469

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 50/258 (19%), Positives = 80/258 (31%), Gaps = 55/258 (21%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARE 77
               RP+   +  GQ  A    +V + A   R   L H  LF GP G GKTTLA+++ R 
Sbjct: 6   ARKYRPKKFSQVVGQETAK---RVILNAV--RLGKLHHAYLFSGPRGTGKTTLARILTRA 60

Query: 78  LGVNFRS------------------------TSGPVIAKAGDLAALLTNL------EDRD 107
           +                                        D+  L   +          
Sbjct: 61  VNCLNPQEGEPCGECENCVAIDKGSFPDLVEMDAASNRGIDDIRNLKDAVSYTPLKGKYK 120

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           V  +DE H L+      L   +E+                     R   +  TT    + 
Sbjct: 121 VYILDEAHMLTKEAFNALLKTLEE------------------PPPRTIFVLCTTEYEKIP 162

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             +  R    I  +  E + + + +    +  GL   ++A   IA  S G  R A  LL 
Sbjct: 163 PTILSRCQ-RIVFSKLEEDLVVSHLFYICREEGLNCEEKALRIIARASDGAMRDALSLLD 221

Query: 228 RVRDFAEVAHAKTITREI 245
           +   + E   ++ +  E 
Sbjct: 222 QAATYGEGNVSEQVVEEF 239


>gi|296807688|ref|XP_002844229.1| activator 1 41 kDa subunit [Arthroderma otae CBS 113480]
 gi|238843712|gb|EEQ33374.1| activator 1 41 kDa subunit [Arthroderma otae CBS 113480]
          Length = 390

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 48/265 (18%), Positives = 85/265 (32%), Gaps = 53/265 (20%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
            Q    +   RP+TL++   Q    S L+  + A+      L H+LF G PG GKT+   
Sbjct: 31  QQTQPWVEKYRPKTLDDVAAQDHTISVLQRNLHAS-----NLPHMLFYGSPGTGKTSTIL 85

Query: 73  VVAR-------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD------------ 107
            +++             EL  +       V  K  D A +  +    D            
Sbjct: 86  AMSKSLFGPALVRSRVLELNASDERGISIVREKIKDFARMHLSQPPADPAYRSQYPCPPF 145

Query: 108 -VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA-TTRVGL 165
            ++ +DE   ++   +  L   ME +                   SR T        V  
Sbjct: 146 KIVILDEADSMTHDAQSALRRTMEKY-------------------SRITRFCLVCNYVTR 186

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           + +P+  R     R    +    ++ +   A++  L + D     +   S G  R A   
Sbjct: 187 IIDPVASRCS-KFRFKVLDGSAARSRLVEIARMEKLDLEDNVVETLLRCSDGDLRKAITF 245

Query: 226 LRRVRDFAE-VAHAKTITREIADAA 249
           ++     A   +  K    +    A
Sbjct: 246 MQSSARLARFGSGKKKEVSDETAEA 270


>gi|298345779|ref|YP_003718466.1| hypothetical protein HMPREF0573_10653 [Mobiluncus curtisii ATCC
           43063]
 gi|298235840|gb|ADI66972.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 43063]
          Length = 789

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 46/161 (28%), Gaps = 39/161 (24%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T E+  GQ      L    +AA A        LF GP G GKTT A+++AR
Sbjct: 4   ALYRRYRPDTFEDVIGQEHVTKAL----QAALANGRVNHAYLFSGPRGCGKTTSARILAR 59

Query: 77  ELGV--------------------------NFRSTSGPVIAKAGDLAALLTNL------E 104
            L                            +             D   L          +
Sbjct: 60  CLNCAQGPTATPCGTCDSCRDLATGGSGSLDVIEIDAASHGGVDDTRELRDRAAYAPARD 119

Query: 105 DRDVLFIDEIHRLSIIVEEILYPAME---DFQLDLMVGEGP 142
              +  IDE H +S      L   +E   D    +     P
Sbjct: 120 RFKIFIIDEAHNVSKEGFNALLKLVEEPPDHIKFIFATTNP 160


>gi|210623910|ref|ZP_03294119.1| hypothetical protein CLOHIR_02070 [Clostridium hiranonis DSM 13275]
 gi|210153274|gb|EEA84280.1| hypothetical protein CLOHIR_02070 [Clostridium hiranonis DSM 13275]
          Length = 560

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 85/249 (34%), Gaps = 25/249 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+   +  GQ      LK  I             +F G  G GKTT A++ AR +    
Sbjct: 10  RPQKFSDVVGQEHIIRTLKNEI----MSGNIAHAYMFSGTRGTGKTTAAKIFARAVNC-L 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI-----IVEEILYPAMEDFQLDLM 137
               G    +     ++L N    D+  ID     S+     I E + Y          +
Sbjct: 65  NPKDGEPCNECESCKSIL-NDSTVDIFEIDAASNNSVDDVREIRESVKYTPANSKYKVYI 123

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT    +   +  R           +E++
Sbjct: 124 IDEAHMLSKGASNALLKTIEEPPEYVVFIFATTEPNKMIPTVLSRCQ-RFDFKRITVEEM 182

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           K  ++      G+ V ++A   IA  S+G  R A  +L R   F      K +  E    
Sbjct: 183 KERMRYICSKEGVEVEEDALSVIARNSQGALRDALSILDRCILF----GDKYLRYEDVVE 238

Query: 249 ALLRLAIDK 257
            L  + ID+
Sbjct: 239 ILGIVNIDE 247


>gi|115443244|ref|XP_001218429.1| activator 1 subunit 3 [Aspergillus terreus NIH2624]
 gi|114188298|gb|EAU29998.1| activator 1 subunit 3 [Aspergillus terreus NIH2624]
          Length = 398

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 59/190 (31%), Gaps = 33/190 (17%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
                   +   RP TL++ +G  +  + +  FIEA +     L H+L  GPPG GKT+ 
Sbjct: 39  EAQDNLPWVEKYRPNTLDDVSGHQDILATINRFIEANR-----LPHLLLYGPPGTGKTST 93

Query: 71  AQVVAR------ELGVNFRSTSGPVIAKAGDLAALLTN-LEDRDVL-------------- 109
              +AR       +       +         +   +      + +               
Sbjct: 94  ILALARKIYGSKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMGPQSGSGSSSLA 153

Query: 110 -----FIDEIHRLSIIVEEILYPAMEDFQLD--LMVGEGPSARSVKINLSRFTLIAATTR 162
                 +DE   ++   +  L   ME +  +    +    + +     LSR T    +  
Sbjct: 154 SFKLIILDEADAMTSTAQMALRRIMERYTANTRFCIIANYTHKLSPALLSRCTRFRFSPL 213

Query: 163 VGLLTNPLQD 172
                  L D
Sbjct: 214 KEPDIRSLVD 223


>gi|331092483|ref|ZP_08341306.1| hypothetical protein HMPREF9477_01949 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330400986|gb|EGG80586.1| hypothetical protein HMPREF9477_01949 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 516

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 80/230 (34%), Gaps = 21/230 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP   ++  GQ    + LK  I+A +         LF G  G GKTT+A++ A+
Sbjct: 5   ALYRKFRPSEFDDVKGQDHIVTTLKNQIKADRIGHAY----LFCGTRGTGKTTVAKIFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +         P   +     ++        V+ ID      +  +  I EE+ Y   E 
Sbjct: 61  AVNCQHTEDGSP-CGECEMCRSIALGASMN-VIEIDAASNNGVDNIREIREEVAYRPTEG 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        + ATT    +   +  R         
Sbjct: 119 KYKVYIIDEVHMLSIGAFNALLKTLEEPPEYVIFVLATTEAHKIPITILSRCQRYDFKRI 178

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
             I+ +   ++       + V ++A   +A  + G+ R A  LL +   F
Sbjct: 179 -SIDTIADRLRELMTEENVEVEEKAIRYVAKMADGSMRDALSLLDQCIAF 227


>gi|325283277|ref|YP_004255818.1| DNA polymerase III, subunits gamma and tau [Deinococcus
           proteolyticus MRP]
 gi|324315086|gb|ADY26201.1| DNA polymerase III, subunits gamma and tau [Deinococcus
           proteolyticus MRP]
          Length = 810

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 51/165 (30%), Gaps = 35/165 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV-- 80
           RP   +E  GQ      LK  +E  +         LF GP G+GKTT A+++A       
Sbjct: 9   RPIHWDEVVGQEHIKGVLKTALEQGRVGHAY----LFSGPRGVGKTTTARLIAMTANCTG 64

Query: 81  ---------------------NFRSTSGPVIAKAGDLAALLTNL------EDRDVLFIDE 113
                                +             D+  L   +        + +  +DE
Sbjct: 65  PQPKPCGECENCRAVRAGSHPDVLEIDAASNNSVEDVRELREKVGLAPMRGGKKIYILDE 124

Query: 114 IHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTL 156
            H +S      L   +E+    +  ++      + +   LSR   
Sbjct: 125 AHMMSRAAFNALLKTLEEPPEHVIFILATTEPEKIIPTILSRCQH 169


>gi|319776114|ref|YP_004138602.1| DNA polymerase III/DNA elongation factor III, tau and subunit
           gammas [Haemophilus influenzae F3047]
 gi|329123278|ref|ZP_08251846.1| DNA polymerase III subunit gamma/tau [Haemophilus aegyptius ATCC
           11116]
 gi|317450705|emb|CBY86925.1| DNA polymerase III/DNA elongation factor III, tau and gamma
           subunits [Haemophilus influenzae F3047]
 gi|327471487|gb|EGF16935.1| DNA polymerase III subunit gamma/tau [Haemophilus aegyptius ATCC
           11116]
          Length = 688

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 52/282 (18%), Positives = 88/282 (31%), Gaps = 65/282 (23%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T  +  GQ    + L     A   +   L H  LF G  G+GKT++A++ A+ L   
Sbjct: 11  RPKTFADVVGQEHIITAL-----ANGLKDNRLHHAYLFSGTRGVGKTSIARLFAKGLNCV 65

Query: 82  F------------------------RSTSGPVIAKAGDLAALLTNLEDRDVL------FI 111
                                             K  D   LL N++ + V+       I
Sbjct: 66  HGVTATPCGECENCKAIEQGNFIDLIEIDAASRTKVEDTRELLDNVQYKPVVGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSRHSFNALLKTLEE------------------PPEYVKFLLATTDPQKLPVTIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L   +   +   +        +   D A  ++A  ++G+ R +  L     D
Sbjct: 168 SRC-LQFHLKALDETQISQHLAHILTQENIPFEDPALVKLAKAAQGSIRDSLSL----TD 222

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIAR 273
            A     + +T  +    L  L       D   +  L  + +
Sbjct: 223 QAIAMGDRQVTNNVVSNMLGLLD------DNYSVDILYALHQ 258


>gi|134083012|emb|CAK42775.1| unnamed protein product [Aspergillus niger]
          Length = 342

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 81/228 (35%), Gaps = 15/228 (6%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
                   +   RP TLE+ +G  +  + +  F+EA +     L H+L  GPPG GKT+ 
Sbjct: 39  EAQDNLPWVEKYRPNTLEDVSGHQDILATINKFVEANR-----LPHLLLYGPPGTGKTST 93

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAAL-LTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
              +AR +          +   A D   + +   + +      +I  ++          +
Sbjct: 94  ILALARRIYGAKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMAPSSTSTSSSTL 153

Query: 130 EDFQLDLMVGEGPSARSVKINLSRF--------TLIAATTRVGLLTNPLQDRFGIPIRLN 181
             ++L ++        + ++ L R                    L+  L  R     R +
Sbjct: 154 ASYKLIILDEADAMTATAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRC-TRFRFS 212

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
             +  D++ +V    +   + +  EA   +   S+G  R A  +L+  
Sbjct: 213 PLKEADIRVLVDIVIEKEQVNIQPEAVDSLVRLSKGDMRRALNVLQAC 260


>gi|238791473|ref|ZP_04635111.1| DNA polymerase III subunit gamma [Yersinia intermedia ATCC 29909]
 gi|238729089|gb|EEQ20605.1| DNA polymerase III subunit gamma [Yersinia intermedia ATCC 29909]
          Length = 658

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 88/244 (36%), Gaps = 29/244 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+ L    
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCET 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILY------PAMEDFQL 134
             T+ P     G  A  L   + R  D++ ID   R  +     L       PA   F++
Sbjct: 67  GITATP----CGTCANCLEIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKV 122

Query: 135 DLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            L+               ++++   +    + ATT    L   +  R  +   L   ++E
Sbjct: 123 YLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRC-LQFHLKVIDVE 181

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
            ++  +++      ++    A   +A  + G+ R A  L     D A       +T    
Sbjct: 182 VIRGQLEKILLAEQISSDARALQLLARAADGSMRDALSL----TDQAVAMGDGHVTTATV 237

Query: 247 DAAL 250
              L
Sbjct: 238 SQML 241


>gi|22536992|ref|NP_687843.1| DNA polymerase III subunits gamma and tau [Streptococcus agalactiae
           2603V/R]
 gi|25010901|ref|NP_735296.1| DNA polymerase III subunits gamma and tau [Streptococcus agalactiae
           NEM316]
 gi|76787118|ref|YP_329574.1| DNA polymerase III subunits gamma and tau [Streptococcus agalactiae
           A909]
 gi|76798944|ref|ZP_00781147.1| DNA polymerase III subunits gamma [Streptococcus agalactiae 18RS21]
 gi|77405538|ref|ZP_00782629.1| DNA polymerase III, gamma and tau subunits [Streptococcus
           agalactiae H36B]
 gi|77410726|ref|ZP_00787085.1| DNA polymerase III, gamma and tau subunits [Streptococcus
           agalactiae CJB111]
 gi|77413110|ref|ZP_00789310.1| DNA polymerase III, gamma and tau subunits [Streptococcus
           agalactiae 515]
 gi|22533847|gb|AAM99715.1|AE014229_16 DNA polymerase III, gamma and tau subunits [Streptococcus
           agalactiae 2603V/R]
 gi|23095280|emb|CAD46490.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76562175|gb|ABA44759.1| DNA polymerase III, gamma and tau subunits [Streptococcus
           agalactiae A909]
 gi|76585711|gb|EAO62266.1| DNA polymerase III subunits gamma [Streptococcus agalactiae 18RS21]
 gi|77160811|gb|EAO71922.1| DNA polymerase III, gamma and tau subunits [Streptococcus
           agalactiae 515]
 gi|77163262|gb|EAO74214.1| DNA polymerase III, gamma and tau subunits [Streptococcus
           agalactiae CJB111]
 gi|77175845|gb|EAO78623.1| DNA polymerase III, gamma and tau subunits [Streptococcus
           agalactiae H36B]
          Length = 554

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 52/259 (20%), Positives = 92/259 (35%), Gaps = 27/259 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     R +T +E  GQ    + LK  + + K         LF GP G GKT+ A++ A+
Sbjct: 4   ALYRKYRSQTFDEMVGQSVISTTLKQAVSSKKISHAY----LFSGPRGTGKTSAAKIFAK 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +    +    P      D+   +TN    DV+ ID      +  +  I ++  Y     
Sbjct: 60  AMNCPNQINGEPCNHC--DICRDITNGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSRA 117

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQD---RFGIPIR 179
                ++ E             ++++        I ATT +  +   +     RF     
Sbjct: 118 TYKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAI 177

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
                 + L  I+ + A    ++   +A   +A R+ G  R A  +L +    A+  H  
Sbjct: 178 KLLAIRDHLAQILDKEA----ISYDLDALTLVARRAEGGMRDALSILDQALSLAKDNHIS 233

Query: 240 TITREIADAALLRLAIDKM 258
               E    ++   AID  
Sbjct: 234 LDVAEEITGSISLSAIDDY 252


>gi|299769631|ref|YP_003731657.1| DNA polymerase III, tau and gamma subunits [Acinetobacter sp. DR1]
 gi|298699719|gb|ADI90284.1| DNA polymerase III, tau and gamma subunits [Acinetobacter sp. DR1]
          Length = 717

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 51/262 (19%), Positives = 81/262 (30%), Gaps = 57/262 (21%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RPR   E  GQ          + +A  R       LF G  G+GKTT+A+++A+ L
Sbjct: 6   ARKYRPRNFNELVGQNHV----SRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCL 61

Query: 79  GVNFRSTS------------------------GPVIAKAGDLAALLTNL------EDRDV 108
                 TS                             K  D   LL N+          V
Sbjct: 62  NCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKV 121

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
             IDE+H LS      L   +E+                         + ATT    L  
Sbjct: 122 YLIDEVHMLSTHSFNALLKTLEE------------------PPEHVKFLFATTDPQKLPI 163

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            +  R  +   L    ++++   +    +   +    +A  +IA  ++G+ R A  L   
Sbjct: 164 TVISRC-LQFTLRPLAVDEITRHLGAILEKEQINADQDAIWQIAESAQGSLRDALSL--- 219

Query: 229 VRDFAEVAHAKTITREIADAAL 250
             D A      ++  +     L
Sbjct: 220 -TDQAIAYGQGSVHHQDVKEML 240


>gi|293365608|ref|ZP_06612317.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus oralis
           ATCC 35037]
 gi|307703557|ref|ZP_07640499.1| DNA polymerase III, subunits gamma and tau [Streptococcus oralis
           ATCC 35037]
 gi|291315976|gb|EFE56420.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus oralis
           ATCC 35037]
 gi|307622964|gb|EFO01959.1| DNA polymerase III, subunits gamma and tau [Streptococcus oralis
           ATCC 35037]
          Length = 552

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 53/296 (17%), Positives = 88/296 (29%), Gaps = 58/296 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     R +T  +  GQ      LK  +E      E + H  LF GP G GKT++A++ A
Sbjct: 4   ALYRKYRSQTFSQLVGQEVVAKTLKQAVE-----QEKISHAYLFSGPRGTGKTSVAKIFA 58

Query: 76  RELGVNFRS------------------------TSGPVIAKAGDLAALLTN------LED 105
           + +    +                                   ++  +         L  
Sbjct: 59  KAMNCPNQVDGEPCNNCYICQAVTEGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLAR 118

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
             V  IDE+H LS      L   +E+                         I ATT +  
Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPT------------------QNVVFILATTELHK 160

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           +   +  R       +    +    I     +   ++   +A   IA R+ G  R A  +
Sbjct: 161 IPATILSRVQRFEFKSIRTQDITAHI-HHILEKEHISSEPDAVEIIARRAEGGMRDALSI 219

Query: 226 LRRVRDFAEVAHAKTITREIADAALLRLAIDKM--GFDQLDL-RYLTMIARNFGGG 278
           L +     +     T   E     +   A+D       Q D+ + L  +   F  G
Sbjct: 220 LDQALSLTQGNALTTAISEEITGTISLSALDDYVAALSQQDVSKALDSLNLLFENG 275


>gi|121635131|ref|YP_975376.1| DNA polymerase III subunits gamma and tau [Neisseria meningitidis
           FAM18]
 gi|120866837|emb|CAM10595.1| DNA polymerase III tau and gamma chains [Neisseria meningitidis
           FAM18]
 gi|325138443|gb|EGC61009.1| DNA polymerase III, subunits gamma and tau [Neisseria meningitidis
           ES14902]
          Length = 709

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 50/303 (16%), Positives = 91/303 (30%), Gaps = 63/303 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T  +  GQ      L+  ++  +     L H  L  G  G+GKTT+A+++A+ L   
Sbjct: 11  RPKTFSDLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCE 65

Query: 82  FRS------------------------TSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                                ++  +L N +         V  I
Sbjct: 66  NAQHGEPCGVCESCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYII 125

Query: 112 DEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+H LS      +   +E+    +  ++      +     LSR                
Sbjct: 126 DEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLHNM------- 178

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
                           + +   +        +A    A   +   + G+ R A  LL + 
Sbjct: 179 --------------TSQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQA 224

Query: 230 RDFAEVAHAKTITREIADAALLRLAIDKM-GFDQLDLRYLTMIARNFGGGPVGIETISAG 288
                 + A+   R++  A   +   + + G    D   LT  A+      VG +     
Sbjct: 225 IAMGSGSVAEQDVRQMIGAVDKQYLYELLTGIINQDGAALTAKAQEMAACAVGFDN---A 281

Query: 289 LSE 291
           L E
Sbjct: 282 LGE 284


>gi|312217043|emb|CBX96992.1| similar to replication factor C subunit [Leptosphaeria maculans]
          Length = 350

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/243 (16%), Positives = 75/243 (30%), Gaps = 39/243 (16%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   +   RP  L++  G  E    LK+      A+   + H++  G PG+GKTT    +
Sbjct: 28  ELPWVEKYRPVYLDDVVGNTETIERLKII-----AKDGNMPHMIISGMPGIGKTTSILCL 82

Query: 75  AR-----ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDV---------LFIDEIHRLSII 120
           AR              +         +   +     + V         + +DE   ++  
Sbjct: 83  ARQLLGDAYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRQKLVILDEADSMTSG 142

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            ++ L   ME +                   S      A  +   +  PLQ R  I    
Sbjct: 143 AQQALRRTMEIYS------------------STTRFAFACNQSNKIIEPLQSRCAILRYA 184

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA-GRLLRRVRDFAEVAHAK 239
              + + ++ ++Q   +   +  +D+    +   + G  R A   L      F  V    
Sbjct: 185 RLTDAQVVRRVMQ-ICEAEDVQYSDDGIAALVFSAEGDMRQAINNLQSTHAGFGFVNGDN 243

Query: 240 TIT 242
              
Sbjct: 244 VFR 246


>gi|271970480|ref|YP_003344676.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021]
 gi|270513655|gb|ACZ91933.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021]
          Length = 727

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/239 (17%), Positives = 79/239 (33%), Gaps = 27/239 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T  E  GQ      L+  + + +         LF GP G GKT+ A+++AR
Sbjct: 4   ALYRKYRPGTFAEVKGQEHVTEPLRQALRSGRINHAY----LFSGPRGCGKTSSARILAR 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALL----TNLEDRDVLFID-----EIHRLSIIVEEILYP 127
            L        GP     G+  + +    T     DV+ ID      +     + E   + 
Sbjct: 60  SLNCEK----GPTPDPCGECESCVALAPTGPGHLDVIEIDAASHGGVDDARDLRERAFFA 115

Query: 128 AMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            +       ++ E             + V+        + ATT    +   ++ R     
Sbjct: 116 PVSARFKIYIIDEAHMVTREGFNALLKLVEEPPPHLKFVFATTEPEKVIGTIKSR-THHY 174

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                    L+T+++       +     A   +     G+ R +  +L ++   ++ A 
Sbjct: 175 PFRLIPPTALRTLMEEILTSEKVPFEPAALPLVVRAGAGSARDSLSILDQLFAGSDEAG 233


>gi|254487014|ref|ZP_05100219.1| DNA polymerase III, tau subunit [Roseobacter sp. GAI101]
 gi|214043883|gb|EEB84521.1| DNA polymerase III, tau subunit [Roseobacter sp. GAI101]
          Length = 578

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 60/300 (20%), Positives = 107/300 (35%), Gaps = 31/300 (10%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T  +  GQ      LK    A +         +  G  G GKTT A+++A+ +
Sbjct: 11  ARKYRPETFVDLVGQDAMVRTLKNAFAADRIAQA----FIMTGIRGTGKTTTARIIAKGM 66

Query: 79  GV-NFRSTSGPVIAKAGDLAALLTNLEDR--DVLFID-----EIHRLSIIVEEILYPAME 130
                    GP     G+    +  +E R  DV+ +D      +  +  I++ + Y A  
Sbjct: 67  NCIGPDGNGGPTTEPCGECEHCVAIMEGRHVDVMEMDAASNTGVGNIREIIDSVHYRAAS 126

Query: 131 DFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
                 ++ E             ++++        I ATT +  +   +  R      L 
Sbjct: 127 ARYKVYIIDEVHMLSTGAFNALLKTLEEPPEHVKFIFATTEIRKVPVTVLSRCQ-RFDLR 185

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
             E E + T++++ A   G  + D+A   I   + G+ R A  LL    D A    A   
Sbjct: 186 RIEPEVMITLMRKIASAEGAEIADDALALITRAAEGSARDATSLL----DQAISHGAGET 241

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T     A L      ++  D  D     ++  +  G    + +  +  ++P   + DL E
Sbjct: 242 TAVQVRAMLGLADRGRV-LDLFD----MILRGDAAGALNELSSQYSDGADPMAVLRDLAE 296


>gi|62289022|ref|YP_220815.1| DNA polymerase III subunits gamma and tau [Brucella abortus bv. 1
           str. 9-941]
 gi|82698960|ref|YP_413534.1| DNA polymerase III subunits gamma and tau [Brucella melitensis
           biovar Abortus 2308]
 gi|161618024|ref|YP_001591911.1| DNA polymerase III subunits gamma and tau [Brucella canis ATCC
           23365]
 gi|189023298|ref|YP_001934066.1| DNA polymerase III subunits gamma and tau [Brucella abortus S19]
 gi|237814509|ref|ZP_04593507.1| DNA polymerase III, subunits gamma and tau [Brucella abortus str.
           2308 A]
 gi|254690348|ref|ZP_05153602.1| DNA polymerase III subunits gamma and tau [Brucella abortus bv. 6
           str. 870]
 gi|254696466|ref|ZP_05158294.1| DNA polymerase III subunits gamma and tau [Brucella abortus bv. 2
           str. 86/8/59]
 gi|254700849|ref|ZP_05162677.1| DNA polymerase III subunits gamma and tau [Brucella suis bv. 5 str.
           513]
 gi|254705216|ref|ZP_05167044.1| DNA polymerase III subunits gamma and tau [Brucella suis bv. 3 str.
           686]
 gi|254709194|ref|ZP_05171005.1| DNA polymerase III subunits gamma and tau [Brucella pinnipedialis
           B2/94]
 gi|254731378|ref|ZP_05189956.1| DNA polymerase III subunits gamma and tau [Brucella abortus bv. 4
           str. 292]
 gi|256030718|ref|ZP_05444332.1| DNA polymerase III subunits gamma and tau [Brucella pinnipedialis
           M292/94/1]
 gi|256060177|ref|ZP_05450357.1| DNA polymerase III subunits gamma and tau [Brucella neotomae 5K33]
 gi|256158724|ref|ZP_05456599.1| DNA polymerase III subunits gamma and tau [Brucella ceti M490/95/1]
 gi|256254122|ref|ZP_05459658.1| DNA polymerase III subunits gamma and tau [Brucella ceti B1/94]
 gi|256258602|ref|ZP_05464138.1| DNA polymerase III subunits gamma and tau [Brucella abortus bv. 9
           str. C68]
 gi|256368500|ref|YP_003106006.1| DNA polymerase III subunits gamma and tau [Brucella microti CCM
           4915]
 gi|260546316|ref|ZP_05822056.1| DNA polymerase III gamma and tau subunit [Brucella abortus NCTC
           8038]
 gi|260567317|ref|ZP_05837787.1| DNA polymerase III gamma and tau [Brucella suis bv. 4 str. 40]
 gi|260755890|ref|ZP_05868238.1| DNA polymerase III gamma and tau [Brucella abortus bv. 6 str. 870]
 gi|260759114|ref|ZP_05871462.1| DNA polymerase III gamma and tau [Brucella abortus bv. 4 str. 292]
 gi|260760839|ref|ZP_05873182.1| DNA polymerase III gamma and tau [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260884914|ref|ZP_05896528.1| DNA polymerase III gamma and tau [Brucella abortus bv. 9 str. C68]
 gi|261221264|ref|ZP_05935545.1| DNA polymerase III gamma and tau [Brucella ceti B1/94]
 gi|261316694|ref|ZP_05955891.1| DNA polymerase III gamma and tau [Brucella pinnipedialis B2/94]
 gi|261324154|ref|ZP_05963351.1| DNA polymerase III gamma and tau [Brucella neotomae 5K33]
 gi|261751359|ref|ZP_05995068.1| DNA polymerase III gamma and tau [Brucella suis bv. 5 str. 513]
 gi|261755924|ref|ZP_05999633.1| DNA polymerase III gamma and tau [Brucella suis bv. 3 str. 686]
 gi|265987764|ref|ZP_06100321.1| DNA polymerase III gamma and tau [Brucella pinnipedialis M292/94/1]
 gi|265997225|ref|ZP_06109782.1| DNA polymerase III gamma and tau [Brucella ceti M490/95/1]
 gi|297247441|ref|ZP_06931159.1| DNA polymerase III subunit gamma/tau [Brucella abortus bv. 5 str.
           B3196]
 gi|62195154|gb|AAX73454.1| DnaX, DNA polymerase III, gamma and tau subunits [Brucella abortus
           bv. 1 str. 9-941]
 gi|82615061|emb|CAJ09987.1| Replication factor C conserved domain:ATP/GTP-binding site motif A
           (P-loop):AAA ATPase:AAA ATPase, central region [Brucella
           melitensis biovar Abortus 2308]
 gi|161334835|gb|ABX61140.1| DNA polymerase III, subunits gamma and tau [Brucella canis ATCC
           23365]
 gi|189018870|gb|ACD71592.1| DNA polymerase III subunits gamma and tau [Brucella abortus S19]
 gi|237789346|gb|EEP63556.1| DNA polymerase III, subunits gamma and tau [Brucella abortus str.
           2308 A]
 gi|255998658|gb|ACU47057.1| DNA polymerase III subunits gamma and tau [Brucella microti CCM
           4915]
 gi|260096423|gb|EEW80299.1| DNA polymerase III gamma and tau subunit [Brucella abortus NCTC
           8038]
 gi|260156835|gb|EEW91915.1| DNA polymerase III gamma and tau [Brucella suis bv. 4 str. 40]
 gi|260669432|gb|EEX56372.1| DNA polymerase III gamma and tau [Brucella abortus bv. 4 str. 292]
 gi|260671271|gb|EEX58092.1| DNA polymerase III gamma and tau [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260675998|gb|EEX62819.1| DNA polymerase III gamma and tau [Brucella abortus bv. 6 str. 870]
 gi|260874442|gb|EEX81511.1| DNA polymerase III gamma and tau [Brucella abortus bv. 9 str. C68]
 gi|260919848|gb|EEX86501.1| DNA polymerase III gamma and tau [Brucella ceti B1/94]
 gi|261295917|gb|EEX99413.1| DNA polymerase III gamma and tau [Brucella pinnipedialis B2/94]
 gi|261300134|gb|EEY03631.1| DNA polymerase III gamma and tau [Brucella neotomae 5K33]
 gi|261741112|gb|EEY29038.1| DNA polymerase III gamma and tau [Brucella suis bv. 5 str. 513]
 gi|261745677|gb|EEY33603.1| DNA polymerase III gamma and tau [Brucella suis bv. 3 str. 686]
 gi|262551693|gb|EEZ07683.1| DNA polymerase III gamma and tau [Brucella ceti M490/95/1]
 gi|264659961|gb|EEZ30222.1| DNA polymerase III gamma and tau [Brucella pinnipedialis M292/94/1]
 gi|297174610|gb|EFH33957.1| DNA polymerase III subunit gamma/tau [Brucella abortus bv. 5 str.
           B3196]
          Length = 602

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 90/248 (36%), Gaps = 25/248 (10%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+  ++  GQ      L+   E  +         +  G  G+GKTT A+++AR L
Sbjct: 14  ARKYRPQNFDDLIGQEPMVRTLRNAFETGRIAQAW----MLTGVRGVGKTTTARILARAL 69

Query: 79  GVNFRSTSGPVI--AKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
                +   P I  +  G+    +      DV+ +D      I  +  I+E++ Y  +  
Sbjct: 70  NYKTDTVDQPTIDLSTPGEHCQAIMEGRHVDVIEMDAASHTGIDDIREIIEQVRYRPVSA 129

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT +  +   +  R      L  
Sbjct: 130 RYKVYIIDEVHMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKVPITVLSRCQ-RFDLRR 188

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            E   L   ++R A+   + V D +   IA    G+ R +  +     D A    A ++T
Sbjct: 189 IESGTLAQHLRRIAEAEKIEVDDASLAMIARAGEGSARDSLSIF----DQAIAHGAGSVT 244

Query: 243 REIADAAL 250
            E   + L
Sbjct: 245 AEAVRSML 252


>gi|17554730|ref|NP_498521.1| RFC (DNA replication factor) family member (rfc-4) [Caenorhabditis
           elegans]
 gi|1703051|sp|P53016|RFC4_CAEEL RecName: Full=Replication factor C subunit 4; AltName:
           Full=Activator 1 subunit 4
 gi|1072162|gb|AAA81689.1| Rfc (dna replication factor) family protein 4, confirmed by
           transcript evidence [Caenorhabditis elegans]
          Length = 334

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 84/232 (36%), Gaps = 11/232 (4%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M+    +     +        RP+TL++   Q E  + LK  ++        L H+LF G
Sbjct: 1   MEEPMEVDNKRPKVLTWTEKYRPKTLDDIAYQDEVVTMLKGALQ-----GRDLPHLLFYG 55

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           PPG GKT+ A    R+L          +   A D   +   +  + +    +        
Sbjct: 56  PPGTGKTSAALAFCRQLFPKNIFHDRVLDLNASDERGI--AVVRQKIQSFSKSSLGHSHR 113

Query: 122 EEIL-YPAMEDFQLDLMVGEGPSARSVKI-NLSRFT-LIAATTRVGLLTNPLQDRFGIPI 178
           E++L    +   ++D M  E  +A    I + S+ T  I     V  L  P+  R     
Sbjct: 114 EDVLKLKIIILDEVDAMTREAQAAMRRVIEDFSKTTRFILICNYVSRLIPPVVSRCA-KF 172

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
           R      E     ++      G  ++D+   ++   S G  R A   L+ + 
Sbjct: 173 RFKSLPAEIQVQRLRTICDAEGTPMSDDELKQVMEYSEGDLRRAVCTLQSLA 224


>gi|315654368|ref|ZP_07907276.1| DNA polymerase III subunit gamma [Mobiluncus curtisii ATCC 51333]
 gi|315491403|gb|EFU81020.1| DNA polymerase III subunit gamma [Mobiluncus curtisii ATCC 51333]
          Length = 789

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 46/161 (28%), Gaps = 39/161 (24%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T E+  GQ      L    +AA A        LF GP G GKTT A+++AR
Sbjct: 4   ALYRRYRPDTFEDVIGQEHVTKAL----QAALANGRVNHAYLFSGPRGCGKTTSARILAR 59

Query: 77  ELGV--------------------------NFRSTSGPVIAKAGDLAALLTNL------E 104
            L                            +             D   L          +
Sbjct: 60  CLNCVQGPTATPCGTCDSCRDLATGGSGSLDVIEIDAASHGGVDDTRELRDRAAYAPARD 119

Query: 105 DRDVLFIDEIHRLSIIVEEILYPAME---DFQLDLMVGEGP 142
              +  IDE H +S      L   +E   D    +     P
Sbjct: 120 RFKIFIIDEAHNVSKEGFNALLKLVEEPPDHIKFIFATTNP 160


>gi|226939891|ref|YP_002794964.1| DnaX [Laribacter hongkongensis HLHK9]
 gi|226714817|gb|ACO73955.1| DnaX [Laribacter hongkongensis HLHK9]
          Length = 769

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 53/265 (20%), Positives = 88/265 (33%), Gaps = 41/265 (15%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPR   +  GQ      L   +       + L H  L  G  G+GKTT+A+++A+ L   
Sbjct: 11  RPRRFADLVGQEHVVRALSNAL-----AGQRLHHAYLLTGTRGVGKTTIARILAKSLNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR--DVLFID-----EIHRLSIIVEEILYPAMEDFQL 134
               + P     G+ AA       R  D+L ID      I  +  ++E   Y        
Sbjct: 66  RGVGAEP----CGECAACRQIDAGRFVDLLEIDAASNTGIDNIREVIENAQYAPTAGRYK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             ++ E             ++++   +    I ATT    +   +  R  +   L     
Sbjct: 122 VYIIDEVHMLSKSAFNAMLKTLEEPPAHVKFILATTDPQKVPVTVLSRC-LQFALRNMTP 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           + +   +       G+     A   +A  + G+ R A  LL    D A       +  + 
Sbjct: 181 QQVSGHLAHVLATEGIEFESPALALLARAASGSMRDALSLL----DQAIAYGEGVVREDG 236

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTM 270
             A L  +          D RYL  
Sbjct: 237 VRAMLGAV----------DRRYLFT 251


>gi|161528731|ref|YP_001582557.1| ATPase AAA [Nitrosopumilus maritimus SCM1]
 gi|160340032|gb|ABX13119.1| AAA family ATPase, CDC48 subfamily [Nitrosopumilus maritimus SCM1]
          Length = 721

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 58/299 (19%), Positives = 101/299 (33%), Gaps = 32/299 (10%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEA--------AKARAEALDH 56
           +   + N+S E A    +R  T EE  G  E    ++  +E         ++   E    
Sbjct: 157 DRSTTLNISTETAVDRKVR-VTYEEVGGLGEKVKAMREIVELPLRHPELFSRLGIEPHSG 215

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DV 108
           +L  GPPG GKT LA+V+A E   N    +GP I           L  +    +D    +
Sbjct: 216 ILLYGPPGCGKTLLAKVMASESEANMFPINGPEIMNKYYGETEAKLRDIFKEAKDNSPSI 275

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +FIDEI  ++   EE  Y  +E   +  ++           +     ++ AT R   +  
Sbjct: 276 IFIDEIDAIAPKREE-AYGDVEKRVVAQLLAL----MDGLNDRGNVIVLGATNRPDSVDP 330

Query: 169 PLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
            L+   RF     ++    +    I+Q   +   +    +     +     T      L 
Sbjct: 331 ALRRPGRFDREFEISVPNEDGRIEILQIHTRGMPIDEDIDLKDLASELHGYTGADIKSLC 390

Query: 227 RRV------RDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGP 279
           R        R   E+             ++    ID   +D +     T +   +   P
Sbjct: 391 REAAMKSIRRYLPEIDLETEKIPSEVLQSMKIKLIDF--YDAMHEVVPTAMREVYVERP 447



 Score = 47.4 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 46/251 (18%), Positives = 78/251 (31%), Gaps = 26/251 (10%)

Query: 23  RPR-TLEEFTGQVEACSNL-KVFIEAA-------KARAEALDHVLFVGPPGLGKTTLAQV 73
           RP+   ++  G  E   +L    I A        K   +     L  GPPG GKT L + 
Sbjct: 446 RPKVWWQDVGGLDEIKKSLTDNLILAMNEPGKFTKMGIKPPKGALIYGPPGCGKTLLGRA 505

Query: 74  VARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEIL 125
           +A E G N     GP I           +  +    +     V+  DE+  L+       
Sbjct: 506 LATETGANMILVRGPEILSKWVGESEKAVREIFRKAKASSPCVVIFDELDSLARSKS--- 562

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183
                +  +   +             SR  +I  T R  ++ N L    R  + + +   
Sbjct: 563 ----GEGGVGENILSQLLTEIEDGVSSRVVVIGITNRPDVVDNSLLRTGRLDLVLYVEPP 618

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           + +    I++   K   L    +           T      L R     A   +A  I+ 
Sbjct: 619 DEKGRLEIIKILTKKMPLTSDVKLQEIAVATQNYTGADLAALCREAAVQAMQNNATKISS 678

Query: 244 EIADAALLRLA 254
           +    +L  + 
Sbjct: 679 QDFANSLKHVR 689


>gi|225571144|ref|ZP_03780142.1| hypothetical protein CLOHYLEM_07232 [Clostridium hylemonae DSM
           15053]
 gi|225159975|gb|EEG72594.1| hypothetical protein CLOHYLEM_07232 [Clostridium hylemonae DSM
           15053]
          Length = 521

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 58/270 (21%), Positives = 93/270 (34%), Gaps = 30/270 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP   E+  GQ      LK  I+A +         LF G  G GKTT+A++ A+
Sbjct: 2   ALYRKFRPDEFEDVKGQDAIVKTLKNQIKADRIGHAY----LFCGTRGTGKTTVAKIFAK 57

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD--VLFID-----EIHRLSIIVEEILYPAM 129
            +         P     G+ A   T        V+ ID      +  +  I EE+ Y   
Sbjct: 58  AVNCEHPVDGSP----CGECAMCRTIASGTSMNVIEIDAASNNGVDNIREIREEVAYRPT 113

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           E      ++ E             ++++        I ATT    +   +  R       
Sbjct: 114 EGRFKVYIIDEVHMLSIGAFNALLKTLEEPPEYVIFILATTEAHKIPITILSRCQRYDFK 173

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
               IE +   ++   +     V ++A   IA  + G+ R A  LL +   F      + 
Sbjct: 174 RI-SIETISGRLRELIEKEEWDVEEKAVRYIARMADGSMRDALSLLDQCAAFYI---GER 229

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTM 270
           +T +     L   A+D   F +L    L M
Sbjct: 230 LTYDHVLEVL--GAVDTEVFSRLLRELLDM 257


>gi|171677049|ref|XP_001903476.1| hypothetical protein [Podospora anserina S mat+]
 gi|170936592|emb|CAP61251.1| unnamed protein product [Podospora anserina S mat+]
          Length = 389

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/245 (18%), Positives = 87/245 (35%), Gaps = 52/245 (21%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
                   +   RP +L++ +G  +  + +  F+++ +     L H+L  GPPG GKT+ 
Sbjct: 38  EAEDSLPWVEKYRPVSLDDVSGHQDILATINKFVDSNR-----LPHLLLYGPPGTGKTST 92

Query: 71  AQVVAR-------------------ELGVNFRSTSGPVIAKAGDLAAL-----LTNLEDR 106
              +AR                   + G++         A    + +L      T L   
Sbjct: 93  ILALARRIYGAENMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSLGASTSKTGLAGF 152

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDFQLD--LMVGEGPSARSVKINLSRFTLIAATTRVG 164
            ++ +DE   ++   +  L   ME + ++    +    S +     LSR T         
Sbjct: 153 KLIILDEADAMTSTAQMALRRIMEKYTVNTRFCIIANYSHKLSPALLSRCTRFRF----- 207

Query: 165 LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGR 224
              +PL++R    +     + E +K             +  EAA  +   S+G  R A  
Sbjct: 208 ---SPLKERDIRVLVDKVIDEEHIK-------------IKPEAADALVKLSKGDMRRALN 251

Query: 225 LLRRV 229
           +L+  
Sbjct: 252 VLQAC 256


>gi|281207472|gb|EFA81655.1| Putative FtsH protease [Polysphondylium pallidum PN500]
          Length = 791

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 57/248 (22%), Positives = 99/248 (39%), Gaps = 29/248 (11%)

Query: 23  RPR-TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVV 74
           RP+ T ++  G  EA S L+  ++  +   + +D        +L VGPPG GKT LA+ +
Sbjct: 238 RPKETFDDVIGADEAKSELQDLVDYLRNPNKYIDRNIVIPKGILLVGPPGTGKTLLAKAL 297

Query: 75  ARELGVNFRSTSGPVIA------KAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEIL- 125
           A E  + F + +G           A  +  L          ++FIDEI  +     + + 
Sbjct: 298 AGEARIPFLTINGSEFEEMFIGVGAKRVRDLFETARKNAPCIVFIDEIDSVGGSRSKRVN 357

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183
           Y   E     L+  +G + R          +IAAT     L   L    RF   I++   
Sbjct: 358 YHPSEALNQLLVELDGFNGREG------VVVIAATNYQETLDAALVRSGRFDRSIQVPLP 411

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           + +  K I++    L              + ++GTP  +G  L  + ++A +   +    
Sbjct: 412 DCKSRKQIIE----LYLKNKKFSTGVNTQIIAQGTPGFSGADLFNLVNWAALDTTRNDRP 467

Query: 244 EIADAALL 251
           EI+  +L 
Sbjct: 468 EISMESLE 475


>gi|154508071|ref|ZP_02043713.1| hypothetical protein ACTODO_00562 [Actinomyces odontolyticus ATCC
           17982]
 gi|153797705|gb|EDN80125.1| hypothetical protein ACTODO_00562 [Actinomyces odontolyticus ATCC
           17982]
          Length = 967

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 61/215 (28%), Gaps = 40/215 (18%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T ++  GQ      LK  + A +         LF GP G GKTT A+++AR
Sbjct: 4   ALYRRYRPDTFDQVIGQEHVTEPLKAALRANRVTHAY----LFSGPRGCGKTTSARILAR 59

Query: 77  ELGV--------------------------NFRSTSGPVIAKAGDLAALLTNL------E 104
            L                            +             D   L          +
Sbjct: 60  CLNCAQGPTDTPCGQCESCRELATGGPGSLDVVEIDAASHGGVDDARDLRERATFAPVRD 119

Query: 105 DRDVLFIDEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTR 162
              +  IDE H ++      L   +E+    +  +       R +    SR         
Sbjct: 120 RYKIFIIDEAHMVTNQGFNALLKLVEEPPEHVKFVFATTEPERVIGTIRSRTHHYPFRLV 179

Query: 163 VGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
              +  P     G+    +    E + T+V R   
Sbjct: 180 PPDVLGPYL--TGLCSEEHIGVGEGVLTLVMRAGG 212


>gi|169771859|ref|XP_001820399.1| replication factor C subunit 3 [Aspergillus oryzae RIB40]
 gi|83768258|dbj|BAE58397.1| unnamed protein product [Aspergillus oryzae]
          Length = 398

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/245 (15%), Positives = 80/245 (32%), Gaps = 41/245 (16%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
                   +   RP TL++ +G  +  + +  F++A +     L H+L  GPPG GKT+ 
Sbjct: 38  EAQDNLPWVEKYRPNTLDDVSGHQDILATINRFVDANR-----LPHLLLYGPPGTGKTST 92

Query: 71  AQVVAR-------------------ELGVNFRSTSGPVIAKAGDLAALL-------TNLE 104
              +AR                   + G++         A    + ++        ++L 
Sbjct: 93  ILALARRIYGSKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMAPQPTSGGSSLA 152

Query: 105 DRDVLFIDEIHRLSIIVEEILYPAMEDFQLD--LMVGEGPSARSVKINLSRFTLIAATTR 162
              ++ +DE   ++   +  L   ME +  +    +    + +     LSR T    +  
Sbjct: 153 SYKLIILDEADAMTATAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPL 212

Query: 163 VGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ-------RGAKLTGLAVTDEAACEIAMRS 215
                  L D   I       + E + ++V+       R   +            +    
Sbjct: 213 KEQDIRSLVD-LVIEKEEVKIQPEAVDSLVKLSKGDMRRALNVLQACHASSIPLPVKNAP 271

Query: 216 RGTPR 220
           +  PR
Sbjct: 272 KDQPR 276


>gi|306842673|ref|ZP_07475317.1| DNA polymerase III, subunits gamma and tau [Brucella sp. BO2]
 gi|306287182|gb|EFM58681.1| DNA polymerase III, subunits gamma and tau [Brucella sp. BO2]
          Length = 602

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 90/248 (36%), Gaps = 25/248 (10%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+  ++  GQ      L+   E  +         +  G  G+GKTT A+++AR L
Sbjct: 14  ARKYRPQNFDDLIGQEPMVRTLRNAFETGRIAQAW----MLTGVRGVGKTTTARILARAL 69

Query: 79  GVNFRSTSGPVI--AKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
                +   P I  +  G+    +      DV+ +D      I  +  I+E++ Y  +  
Sbjct: 70  NYKTDTVDQPTIDLSTPGEHCQAIMEGRHVDVIEMDAASHTGIDDIREIIEQVRYRPVSA 129

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT +  +   +  R      L  
Sbjct: 130 RYKVYIIDEVHMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKVPITVLSRCQ-RFDLRR 188

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            E   L   ++R A+   + V D +   IA    G+ R +  +     D A    A ++T
Sbjct: 189 IESGTLAQHLRRIAEAEKIEVDDASLAMIARAGEGSARDSLSIF----DQAIAHGAGSVT 244

Query: 243 REIADAAL 250
            E   + L
Sbjct: 245 AEAVRSML 252


>gi|294508590|ref|YP_003572649.1| DNA polymerase III subunit tau [Salinibacter ruber M8]
 gi|294344919|emb|CBH25697.1| DNA polymerase III subunit tau [Salinibacter ruber M8]
          Length = 759

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 63/349 (18%), Positives = 103/349 (29%), Gaps = 80/349 (22%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFV 60
           MD +  L              RP    E   Q      LK  I       E L H  LF 
Sbjct: 32  MDEQRYL--------VTARKYRPSLFTEVVAQEHVTETLKNAIRM-----ERLAHAYLFS 78

Query: 61  GPPGLGKTTLAQVVARELGV-----------------------------NFRSTSGPVIA 91
           GP G+GKTT A+++A+ +                               N          
Sbjct: 79  GPRGVGKTTAARILAKAINCETPREEREDGAEPCCECDSCESFEAGRSLNVFEMDAASNN 138

Query: 92  KAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMED---FQLDLMVGEGP 142
           K  D+  L   +        + V  +DE+H LS      L   +E+     L +     P
Sbjct: 139 KVDDIRELREKVRIPPQGDQKKVYILDEVHMLSKQAFNALLKTLEEPPAHALFIFATTEP 198

Query: 143 SARSVKINLSRFTLIAATTR-VGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
             + +   LSR          V  +   L++           + E L  + ++G      
Sbjct: 199 H-KVLPTILSRCQRFDFRRIPVPEIVQRLREICETEGVEA--DEESLMLLARKGNGALRD 255

Query: 202 AVTD--------EAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           A++          A  E    ++    +   L  R+ D   VA   T         ++R 
Sbjct: 256 ALSAFDQALSLCGATLEYGELTQALGVVDQDLYFRLTD--HVAAQDTAGMIELVRHVVRS 313

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
             D           L  +A +       +  +    S   +A+E++ E 
Sbjct: 314 GYDLQ-------EMLVGLAEH-------LRNLLVAHSLGGEALEEVAES 348


>gi|226492916|ref|NP_001148581.1| replication factor C subunit 2 [Zea mays]
 gi|195620566|gb|ACG32113.1| replication factor C subunit 2 [Zea mays]
          Length = 339

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 83/244 (34%), Gaps = 45/244 (18%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           ++  V      +   RPR +++   Q E    L   ++ A      L H+LF GPPG GK
Sbjct: 1   MAPLVPMSQPWVEKYRPRQVKDVAHQEEVIRVLNNTLQTAD-----LPHMLFYGPPGTGK 55

Query: 68  TTLAQVVAR-------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------- 106
           TT A  +A              EL  +       V  K  + AA+      +        
Sbjct: 56  TTTALAIAYQLYGPELYKSRVLELNASDDRGINVVRTKIKNFAAVAVGTARKAGYPCPPY 115

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
            ++ +DE   ++   +  L    E +                  ++RF  I     +  +
Sbjct: 116 KIIILDEADSMTEDAQNALRRTTETYS----------------KVTRFFFIC--NYISRI 157

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
             PL  R     R      E + + +       GL +  +A   +++ S+G  R A   L
Sbjct: 158 IEPLASRCA-KFRFKPLSEEVMSSRIMHICNEEGLNLNAQAMSTLSVISQGDLRRAITYL 216

Query: 227 RRVR 230
           +   
Sbjct: 217 QSAA 220


>gi|198426342|ref|XP_002130063.1| PREDICTED: similar to Replication factor C (activator 1) 2, 40kDa
           [Ciona intestinalis]
          Length = 336

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 93/278 (33%), Gaps = 40/278 (14%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           S   + E   +   RP  L +  G     S L+VF     A    + +++  GPPG GKT
Sbjct: 10  SAKPAYELPWVEKYRPTKLSDVVGNEATVSRLEVF-----ANEGNVPNIIIAGPPGAGKT 64

Query: 69  TLAQVVAREL-----GVNFRSTSGPVIAKAGDLAALLTNLEDR---------DVLFIDEI 114
           T    +AR +      V     +         +   +     +          ++ +DE 
Sbjct: 65  TSIMCLARTMLGASYDVAVLELNASNDRGIDVVRNKIKMFAQKKVTLPKGKHKIIILDEA 124

Query: 115 HRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRF 174
             ++   ++ L   ME +                   +RF    A  +   +  P+Q R 
Sbjct: 125 DSMTSGAQQALRRTMEIYSKT----------------TRF--ALACNQSDKIIEPIQSRC 166

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
            + +R +    E + + +       G+   D     +   ++G  R A   L+       
Sbjct: 167 AV-LRYSKLSDEQILSRLMEVIDKEGVRYDDSGLEALLFTAQGDMRQALNNLQSTHQGFS 225

Query: 235 VAHAKTITR--EIADAALLRLAIDKMGFDQLDLRYLTM 270
             ++  + +  +     LL+  +D      LD  Y T+
Sbjct: 226 FINSDNVFKVCDEPHPLLLKTMLDHCVKADLDEAYKTI 263


>gi|169825458|ref|YP_001695633.1| DNA polymerase III subunit gamma/tau [Lysinibacillus sphaericus
           C3-41]
 gi|168994735|gb|ACA42274.1| DNA polymerase III subunit gamma/tau [Lysinibacillus sphaericus
           C3-41]
          Length = 636

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 63/211 (29%), Gaps = 37/211 (17%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR--- 76
              RP+  +   GQ    + L    E +    +     LF GP G GKT+ A++ A+   
Sbjct: 10  RKYRPQGFDNLIGQNHVKNTL----ENSIKHNKVAHAYLFTGPRGTGKTSAAKIFAKLLN 65

Query: 77  -----------------ELGVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFIDE 113
                            +   +             D+  L            + V  IDE
Sbjct: 66  CQSPIDYNPCGECVCCQDSNTDIIEMDAASNNGVDDIRDLREKVNYAPAFGKKKVYIIDE 125

Query: 114 IHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           +H LS      L   +E+    +  ++      +     LSR              + + 
Sbjct: 126 VHMLSTAAFNALLKTLEEPPAHIVFILATTEPHKIPATILSRCQRYDFRRISQ---DDIV 182

Query: 172 DRFGIPIRLNFYEIED--LKTIVQRGAKLTG 200
            R    +     EIE+  L+ I Q  A    
Sbjct: 183 HRMKTIVEAESVEIEEQALRLISQIAAGGMR 213


>gi|301169970|emb|CBW29574.1| DNA polymerase III/DNA elongation factor III, tau and gamma
           subunits [Haemophilus influenzae 10810]
          Length = 688

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 52/282 (18%), Positives = 88/282 (31%), Gaps = 65/282 (23%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T  +  GQ    + L     A   +   L H  LF G  G+GKT++A++ A+ L   
Sbjct: 11  RPKTFADVVGQEHIITAL-----ANGLKDNRLHHAYLFSGTRGVGKTSIARLFAKGLNCV 65

Query: 82  F------------------------RSTSGPVIAKAGDLAALLTNLEDRDVL------FI 111
                                             K  D   LL N++ + V+       I
Sbjct: 66  HGVTATPCGECENCKAIEQGNFIDLIEIDAASRTKVEDTRELLDNVQYKPVVGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSRHSFNALLKTLEE------------------PPEYVKFLLATTDPQKLPVTIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L   +   +   +        +   D A  ++A  ++G+ R +  L     D
Sbjct: 168 SRC-LQFHLKALDETQISQHLAHILTQENIPFEDPALVKLAKAAQGSIRDSLSL----TD 222

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIAR 273
            A     + +T  +    L  L       D   +  L  + +
Sbjct: 223 QAIAMGDRQVTNNVVSNMLGLLD------DNYSVDILYALHQ 258


>gi|281356099|ref|ZP_06242592.1| DNA polymerase III, subunits gamma and tau [Victivallis vadensis
           ATCC BAA-548]
 gi|281317468|gb|EFB01489.1| DNA polymerase III, subunits gamma and tau [Victivallis vadensis
           ATCC BAA-548]
          Length = 615

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 59/301 (19%), Positives = 103/301 (34%), Gaps = 27/301 (8%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +S+        RP+   +  GQ      L+  I   +         LFVGP G+GKTTLA
Sbjct: 1   MSEYQVIARKWRPQRFGDVVGQQHVVRTLENAIRQQRTAHAY----LFVGPRGVGKTTLA 56

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHR-----LSIIVEEILY 126
           ++ A+ +        G    +     A+       DV+ +D   R     +  + E++L 
Sbjct: 57  RIFAKAMNCLDPQD-GEPCCRCESCRAIAEE-RSLDVMEVDAASRNTTGDMRELAEDVLT 114

Query: 127 PAMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
             +       ++ E             ++V+   +    I ATT V  +   +  R    
Sbjct: 115 QPVGGRYKIYIIDEVHMLSKQAWNVLLKTVEEPPAHVKFIFATTEVHQVLPTIISRCQ-R 173

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
             L       +   ++       + + D A   IA  + G  R A  LL ++  F     
Sbjct: 174 FDLLPIPTRLITERLRLICDSEQVKINDSAIGAIARAAEGGMRDAQSLLDQMIAFFSQGD 233

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
              IT E   +       D+   D      +  + RN  G  V I +  A   +  + + 
Sbjct: 234 DTPITGEQVLSLFGLT--DRTDLD----ALMVAMLRNAPGEVVSIVSRLARKGKNLETLF 287

Query: 298 D 298
           D
Sbjct: 288 D 288


>gi|294851443|ref|ZP_06792116.1| DNA polymerase III subunit gamma/tau [Brucella sp. NVSL 07-0026]
 gi|294820032|gb|EFG37031.1| DNA polymerase III subunit gamma/tau [Brucella sp. NVSL 07-0026]
          Length = 602

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 90/248 (36%), Gaps = 25/248 (10%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+  ++  GQ      L+   E  +         +  G  G+GKTT A+++AR L
Sbjct: 14  ARKYRPQNFDDLIGQEPMVRTLRNAFETGRIAQAW----MLTGVRGVGKTTTARILARAL 69

Query: 79  GVNFRSTSGPVI--AKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
                +   P I  +  G+    +      DV+ +D      I  +  I+E++ Y  +  
Sbjct: 70  NYKTDTVDQPTIDLSTPGEHCQAIMEGRHVDVIEMDAASHTGIDDIREIIEQVRYRPVSA 129

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT +  +   +  R      L  
Sbjct: 130 RYKVYIIDEVHMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKVPITVLSRCQ-RFDLRR 188

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            E   L   ++R A+   + V D +   IA    G+ R +  +     D A    A ++T
Sbjct: 189 IESGTLAQHLRRIAEAEKIEVDDASLAMIARAGEGSARDSLSIF----DQAIAHGAGSVT 244

Query: 243 REIADAAL 250
            E   + L
Sbjct: 245 AEAVRSML 252


>gi|302552517|ref|ZP_07304859.1| DNA polymerase III gamma and tau [Streptomyces viridochromogenes
           DSM 40736]
 gi|302470135|gb|EFL33228.1| DNA polymerase III gamma and tau [Streptomyces viridochromogenes
           DSM 40736]
          Length = 627

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/239 (17%), Positives = 75/239 (31%), Gaps = 27/239 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T  E  GQ      L+  +   +         LF GP G GKTT A+++AR
Sbjct: 5   ALYRRYRPETFAEVIGQEHVTDPLQQALRNNRVNHAY----LFSGPRGCGKTTSARILAR 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR----DVLFIDEIHRLSII------VEEILY 126
            L        GP     G+  +      +     DV+ ID      +        +    
Sbjct: 61  CLNCE----QGPTPTPCGECQSCQDLARNGPGSIDVIEIDAASHGGVDDARDLREKAFFG 116

Query: 127 PAMEDFQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
           PA   +++ ++         G     + V+        I ATT    +   ++ R     
Sbjct: 117 PARSRYKIYIIDEAHMVTSAGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSR-THHY 175

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                    L+  +    +     V D     +     G+ R +  ++ ++   A    
Sbjct: 176 PFRLVPPGTLRDYLAEVCQKENNPVEDGVLPLVVRAGGGSVRDSMSVMDQLLAGAAADG 234


>gi|222153344|ref|YP_002562521.1| DNA polymerase III subunits gamma and tau [Streptococcus uberis
           0140J]
 gi|222114157|emb|CAR42660.1| DNA polymerase III subunit gamma/tau [Streptococcus uberis 0140J]
          Length = 555

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 55/260 (21%), Positives = 95/260 (36%), Gaps = 29/260 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     R ++  E  GQ    + LK  +E+ K     + H  LF GP G GKT+ A++ A
Sbjct: 4   ALYRKYRSQSFSEMVGQSVISTTLKQAVESGK-----ISHAYLFSGPRGTGKTSAAKIFA 58

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAME 130
           + +    +    P      DL   +TN    DV+ ID      +  +  I ++  Y    
Sbjct: 59  KAMNCPHQVNGEPCNQC--DLCQDITNGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSR 116

Query: 131 DFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQD---RFGIPI 178
                 ++ E             ++++        I ATT +  +   +     RF    
Sbjct: 117 ATYKVYIIDEVHMLSSGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKS 176

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
                  + L +I++      GL+   EA   IA R+ G  R A  +L +    +     
Sbjct: 177 IKQTDIADHLASILE----KEGLSYQAEALSLIARRAEGGMRDALSILDQALSLSSKNQV 232

Query: 239 KTITREIADAALLRLAIDKM 258
              T E    ++   A+D+ 
Sbjct: 233 DLSTAEEITGSISIKALDEY 252


>gi|171779618|ref|ZP_02920574.1| hypothetical protein STRINF_01455 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281720|gb|EDT47154.1| hypothetical protein STRINF_01455 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 562

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 47/255 (18%), Positives = 88/255 (34%), Gaps = 21/255 (8%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     R +T +E  GQ    + LK  + + K         LF GP G GKT+ A++ A+
Sbjct: 4   ALYRKYRSQTFDEMVGQTVISTTLKQAVSSGKISHAY----LFSGPRGTGKTSAAKIFAK 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +    +    P      D+   +TN    DV+ ID      +  +  I ++  Y     
Sbjct: 60  AMNCPHQVNGEPCNHC--DICHDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRA 117

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT +  +   +  R         
Sbjct: 118 TYKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQ-RFEFKA 176

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            ++  ++  +       G+   ++A   IA  + G  R A  +L +        H     
Sbjct: 177 IKLAAIRDHLADILGKEGITYEEDALTLIARCAEGGMRDALSILDQALSLTSDNHVSLSI 236

Query: 243 REIADAALLRLAIDK 257
            E    ++   A+D 
Sbjct: 237 AEEITGSISMTALDD 251


>gi|47458908|ref|YP_015770.1| DNA polymerase III subunits gamma and tau [Mycoplasma mobile 163K]
 gi|47458236|gb|AAT27559.1| DNA polymerase III subunit gamma and tau [Mycoplasma mobile 163K]
          Length = 720

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 60/189 (31%), Gaps = 43/189 (22%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     RP+  +E  GQ    + LK  +       + L H  LF GP G GKT++A++ A
Sbjct: 5   ALYRKYRPKNFDEIKGQDHIVTTLKNIL-----NFDKLSHAYLFSGPRGTGKTSVAKIFA 59

Query: 76  RELGVNFRS---------------------TSGPVIAKAGDLAALLTNLE------DRDV 108
             L                                     ++  L   ++         V
Sbjct: 60  AALNCEHEIQKEKICNLCVENLDNNLDIIEIDAASNNGVDEIRELREKVKYSPSQYKYKV 119

Query: 109 LFIDEIHRLSIIVEEILYPAMED---FQLDLMVGEGPS-------ARSVKINLSRFTLIA 158
             IDE H L+      L   +E+     + ++    P        +R  + N  R TL  
Sbjct: 120 YIIDEAHMLTKSAFNALLKTLEEPPKHAIFILATTDPQKIPLTVISRVQRFNFKRITLPI 179

Query: 159 ATTRVGLLT 167
              ++  + 
Sbjct: 180 LEKQLQEVL 188


>gi|16273148|ref|NP_439385.1| DNA polymerase III subunits gamma and tau [Haemophilus influenzae
           Rd KW20]
 gi|260581148|ref|ZP_05848968.1| DNA-directed DNA polymerase subunit III gamma/tau [Haemophilus
           influenzae RdAW]
 gi|1169397|sp|P43746|DPO3X_HAEIN RecName: Full=DNA polymerase III subunit gamma/tau
 gi|1574159|gb|AAC22882.1| DNA polymerase III, subunits gamma and tau (dnaX) [Haemophilus
           influenzae Rd KW20]
 gi|260092176|gb|EEW76119.1| DNA-directed DNA polymerase subunit III gamma/tau [Haemophilus
           influenzae RdAW]
          Length = 688

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 52/282 (18%), Positives = 88/282 (31%), Gaps = 65/282 (23%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T  +  GQ    + L     A   +   L H  LF G  G+GKT++A++ A+ L   
Sbjct: 11  RPKTFADVVGQEHIITAL-----ANGLKDNRLHHAYLFSGTRGVGKTSIARLFAKGLNCV 65

Query: 82  F------------------------RSTSGPVIAKAGDLAALLTNLEDRDVL------FI 111
                                             K  D   LL N++ + V+       I
Sbjct: 66  HGVTATPCGECENCKAIEQGNFIDLIEIDAASRTKVEDTRELLDNVQYKPVVGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSRHSFNALLKTLEE------------------PPEYVKFLLATTDPQKLPVTIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L   +   +   +        +   D A  ++A  ++G+ R +  L     D
Sbjct: 168 SRC-LQFHLKALDETQISQHLAHILTQENIPFEDPALVKLAKAAQGSIRDSLSL----TD 222

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIAR 273
            A     + +T  +    L  L       D   +  L  + +
Sbjct: 223 QAIAMGDRQVTNNVVSNMLGLLD------DNYSVDILYALHQ 258


>gi|86148367|ref|ZP_01066660.1| DNA polymerase III subunits gamma and tau [Vibrio sp. MED222]
 gi|85833850|gb|EAQ52015.1| DNA polymerase III subunits gamma and tau [Vibrio sp. MED222]
          Length = 758

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 55/265 (20%), Positives = 90/265 (33%), Gaps = 35/265 (13%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP   +E  GQ    + L    E A ++       LF G  G+GKTT+ ++ A+ L    
Sbjct: 11  RPTKFKEVVGQAHVLTAL----ENALSQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCET 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILY------PAMEDFQL 134
             TS P     G+ A      E R  D+L ID   R  +     L       PA   F++
Sbjct: 67  GITSTP----CGECATCKEIDEGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRFKV 122

Query: 135 DLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            L+               ++++        + ATT    L   +  R  +   L    ++
Sbjct: 123 YLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRC-LQFHLKPISVD 181

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           ++   +    +   +     A   IA  + G+ R A  L     D A       +  +  
Sbjct: 182 NIHEQLDHILEQENVTSEPRALGMIAHAADGSMRDALSL----SDQAIALGNGNVVTDTV 237

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMI 271
              L  L  D+       +  L  I
Sbjct: 238 AHMLGTLDTDQA------IHLLEAI 256


>gi|316984570|gb|EFV63535.1| DNA polymerase III, subunits gamma and tau [Neisseria meningitidis
           H44/76]
 gi|325140612|gb|EGC63132.1| DNA polymerase III, subunits gamma and tau [Neisseria meningitidis
           CU385]
 gi|325144737|gb|EGC67032.1| DNA polymerase III, subunits gamma and tau [Neisseria meningitidis
           M01-240013]
 gi|325205803|gb|ADZ01256.1| DNA polymerase III, subunits gamma and tau [Neisseria meningitidis
           M04-240196]
          Length = 733

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 50/303 (16%), Positives = 90/303 (29%), Gaps = 63/303 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T  +  GQ      L+  ++  +     L H  L  G  G+GKTT+A+++A+ L   
Sbjct: 40  RPKTFADLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCE 94

Query: 82  FRS------------------------TSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                                ++  +L N +         V  I
Sbjct: 95  NAQHGEPCGVCESCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYII 154

Query: 112 DEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+H LS      +   +E+    +  ++      +     LSR                
Sbjct: 155 DEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNM------- 207

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
                           + +   +        +A    A   +   + G+ R A  LL + 
Sbjct: 208 --------------TAQQVADHLAHVLDSEKIAYEPAALQLLGRAAAGSMRDALSLLDQA 253

Query: 230 RDFAEVAHAKTITREIADAALLRLAIDKM-GFDQLDLRYLTMIARNFGGGPVGIETISAG 288
                   A+   R++  A   +   + + G    D   LT  A+      VG +     
Sbjct: 254 IALGSGKVAENDVRQMIGAVDKQYLYELLTGIINQDGAALTAKAQEMAACAVGFDN---A 310

Query: 289 LSE 291
           L E
Sbjct: 311 LGE 313


>gi|218441342|ref|YP_002379671.1| DNA polymerase III subunits gamma and tau [Cyanothece sp. PCC 7424]
 gi|218174070|gb|ACK72803.1| DNA polymerase III, subunits gamma and tau [Cyanothece sp. PCC
           7424]
          Length = 730

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 78/221 (35%), Gaps = 19/221 (8%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +      RP+T  +  GQ      L   I   +         LF GP G GKT+ A+++A
Sbjct: 4   EPLHHKYRPQTFMDLVGQEAIAQTLINAITTNRIA----PAYLFTGPRGTGKTSSARILA 59

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAME 130
           + L         P+     ++   +      D++ ID      +  +  I+E   +  ++
Sbjct: 60  KSLNCLSSDKPTPIPCGTCEVCKAIARSSALDIIEIDAASNTGVDNIREIIERAQFAPVQ 119

Query: 131 DFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
                 ++ E             ++++   +    + ATT    +   +  R        
Sbjct: 120 CRYKVYVIDECHMLSVAAFNALLKTLEEPPNHVVFVLATTDPQRVLPTIISRCQ-RFDYR 178

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
              +ED+   ++  A    + + DEA   +A  + G  R A
Sbjct: 179 RIPLEDMVKHLKLIANKESIDIDDEAITLVAQIANGGLRDA 219


>gi|207743913|ref|YP_002260305.1| atpase related to the helicase subunit of the holliday junction
           resolvase (partial sequence) protein [Ralstonia
           solanacearum IPO1609]
 gi|206595315|emb|CAQ62242.1| putative atpase related to the helicase subunit of the holliday
           junction resolvase (partial sequence) protein [Ralstonia
           solanacearum IPO1609]
          Length = 283

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/142 (23%), Positives = 49/142 (34%), Gaps = 15/142 (10%)

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           RG    GL     A   +   + G  R     L  V   A  A A+  T    D ALL  
Sbjct: 11  RGRNWGGLEWVPAALDAVVASADGDGRKLLNNLEIVTRAAR-AQAEGDTVPTVDEALLAS 69

Query: 254 AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
           A+ +             + R   GG    + ISA     R +  D    +  +       
Sbjct: 70  ALSEN------------LRRFDKGGDAFYDQISALHKSVRGSDPDAALYWFCRMLDGGAD 117

Query: 314 PR--GRLLMPIAWQHLGIDIPH 333
           PR   R ++ +AW+ +G+  P 
Sbjct: 118 PRYLARRIVRMAWEDIGLADPR 139


>gi|288904969|ref|YP_003430191.1| DNA polymerase III, gamma and tau subunits [Streptococcus
           gallolyticus UCN34]
 gi|288731695|emb|CBI13256.1| DNA polymerase III, gamma and tau subunits [Streptococcus
           gallolyticus UCN34]
          Length = 559

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 46/255 (18%), Positives = 88/255 (34%), Gaps = 21/255 (8%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     R +T +E  GQ    + LK  + + K         LF GP G GKT+ A++ A+
Sbjct: 4   ALYRKYRSQTFDEMVGQTVVSTTLKQAVSSGKISHAY----LFSGPRGTGKTSAAKIFAK 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +    +    P      D+   +TN    DV+ ID      +  +  I ++  Y     
Sbjct: 60  AMNCPNQVNGEPCNHC--DICRDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRA 117

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT +  +   +  R         
Sbjct: 118 TYKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPTTILSRVQ-RFEFKA 176

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            ++  ++  +        ++  ++A   IA  + G  R A  +L +        H     
Sbjct: 177 IKLAAIREHLANILDKEEISYEEDALTLIARCAEGGMRDALSILDQALSLTPDNHVSLAI 236

Query: 243 REIADAALLRLAIDK 257
            E    ++   A+D 
Sbjct: 237 AEEITGSISMTALDD 251


>gi|228905819|ref|ZP_04069718.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis IBL
           200]
 gi|228853827|gb|EEM98585.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis IBL
           200]
          Length = 562

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 68/209 (32%), Gaps = 42/209 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+  E+  GQ      L+  +       E + H  LF GP G GKTT+A+V A+ +   
Sbjct: 11  RPQKFEDVVGQKHVTKTLQNAL-----LQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCE 65

Query: 82  F------------------------RSTSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                                ++  +   ++      +  V  I
Sbjct: 66  HAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKVYII 125

Query: 112 DEIHRLSIIVEEILYPAMED--FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+H LS+     L   +E+    +  ++      +     +SR              N 
Sbjct: 126 DEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKIS---VND 182

Query: 170 LQDRFGIPIRLNFYEIEDLK-TIVQRGAK 197
           + +R    +      +ED    IV R A+
Sbjct: 183 IVERLSTVVTNEGTRVEDEALQIVARAAE 211


>gi|308810180|ref|XP_003082399.1| Replication factor C 2 (ISS) [Ostreococcus tauri]
 gi|116060867|emb|CAL57345.1| Replication factor C 2 (ISS) [Ostreococcus tauri]
          Length = 354

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 80/225 (35%), Gaps = 38/225 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+TL++  G  +A   ++  + +       + +++F GPPG GKT+   V++R
Sbjct: 22  PWLEKYRPKTLDDIVGNDDAVDRMRSMVASG-----FMPNLMFCGPPGCGKTSAIGVLSR 76

Query: 77  ------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIHRLSIIVE 122
                       E+  +       V  K    A     L      ++ +DE   ++   +
Sbjct: 77  ALLGDKYKDAVLEMNASDERGIDVVRNKIKMFAQKKVTLPPGRTKIVILDEADAMTTAAQ 136

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           + L   ME F                   +RF    A      +  P+Q R  I   +  
Sbjct: 137 QALRRTMEIFSAT----------------TRF--CLACNTSDKVIEPIQSRCAIVRFVKL 178

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
            + + LK ++    +   +A   +    I   + G  R A   L+
Sbjct: 179 TDEQVLKRLMTVIERE-KVAYVPKGLEAIVFTADGDMRQALNNLQ 222


>gi|307822531|ref|ZP_07652762.1| DNA polymerase III, subunits gamma and tau [Methylobacter
           tundripaludum SV96]
 gi|307736135|gb|EFO06981.1| DNA polymerase III, subunits gamma and tau [Methylobacter
           tundripaludum SV96]
          Length = 540

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/243 (17%), Positives = 83/243 (34%), Gaps = 27/243 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP    E  GQ     +L   ++      + L H  LF G  G+GKTT+A+++A+ +   
Sbjct: 11  RPHNFTEVVGQEHVVKSLMNALQ-----HDRLHHAYLFTGTRGVGKTTIARILAKAINCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLD 135
                 P       +   L      D++ +D   R  +     L       P    +++ 
Sbjct: 66  NLQDFNP--CGVCSVCRDLDEGRFLDLIEVDAASRTKVEDTRDLLDNAQYAPNHGRYKVY 123

Query: 136 LM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           L+               ++++   +    + ATT    +   +  R  +   L       
Sbjct: 124 LIDEVHMLSGHSFNALLKTLEEPPAHVKFLLATTDPHKIPVTVLSRC-LQFNLKRLLPSQ 182

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           + T ++   +   +     A   ++  + G+ R    LL    D A V     +  E  +
Sbjct: 183 IFTQMEFILQQEHIEAESGALKLLSRAADGSMRDGLSLL----DQAIVYGNGKVGTEDVN 238

Query: 248 AAL 250
           A L
Sbjct: 239 AML 241


>gi|295395500|ref|ZP_06805695.1| DNA polymerase III, gamma/tau subunits [Brevibacterium mcbrellneri
           ATCC 49030]
 gi|294971671|gb|EFG47551.1| DNA polymerase III, gamma/tau subunits [Brevibacterium mcbrellneri
           ATCC 49030]
          Length = 894

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/175 (22%), Positives = 60/175 (34%), Gaps = 26/175 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T  +  GQ      LK  ++  +         LF GP G GKTT A+++AR
Sbjct: 4   ALYRRYRPDTFADVIGQDHVTGPLKAALDNGRVNHAY----LFSGPRGCGKTTSARILAR 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR----DVLFIDEIHRLSIIVEEILY------ 126
            L        GP     G  A+            DV+ ID      +     L       
Sbjct: 60  CLNCE----QGPTSTPCGQCASCRDLATGGPGSLDVVEIDAASHNGVDDARDLRERAVYA 115

Query: 127 PAMEDFQLDLMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           PA + F++ ++         G     + V+        + ATT    +   ++ R
Sbjct: 116 PARDRFKVFILDEAHMVTPQGFNALLKLVEEPPPHVKFVFATTEPEKVIGTIRSR 170


>gi|260582657|ref|ZP_05850446.1| DNA-directed DNA polymerase subunit III gamma/tau [Haemophilus
           influenzae NT127]
 gi|260094329|gb|EEW78228.1| DNA-directed DNA polymerase subunit III gamma/tau [Haemophilus
           influenzae NT127]
          Length = 688

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 52/282 (18%), Positives = 88/282 (31%), Gaps = 65/282 (23%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T  +  GQ    + L     A   +   L H  LF G  G+GKT++A++ A+ L   
Sbjct: 11  RPKTFADVVGQEHIITAL-----ANGLKDNRLHHAYLFSGTRGVGKTSIARLFAKGLNCV 65

Query: 82  F------------------------RSTSGPVIAKAGDLAALLTNLEDRDVL------FI 111
                                             K  D   LL N++ + V+       I
Sbjct: 66  HGVTATPCGECENCKAIEQGNFIDLIEIDAASRTKVEDTRELLDNVQYKPVVGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSRHSFNALLKTLEE------------------PPEYVKFLLATTDPQKLPVTIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L   +   +   +        +   D A  ++A  ++G+ R +  L     D
Sbjct: 168 SRC-LQFHLKALDETQISQHLAHILTQENIPFEDPALVKLAKAAQGSIRDSLSL----TD 222

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIAR 273
            A     + +T  +    L  L       D   +  L  + +
Sbjct: 223 QAIAMGDRQVTNNVVSNMLGLLD------DNYSVDILYALHQ 258


>gi|119467812|ref|XP_001257712.1| DNA replication factor C subunit Rfc4, putative [Neosartorya
           fischeri NRRL 181]
 gi|119405864|gb|EAW15815.1| DNA replication factor C subunit Rfc4, putative [Neosartorya
           fischeri NRRL 181]
          Length = 348

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 74/239 (30%), Gaps = 35/239 (14%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   +   RP  L++  G  E    LK+      A+   + HV+  G PG+GKTT    +
Sbjct: 27  ELPWVEKYRPIFLDDIVGNTETIERLKII-----AKDGNMPHVIISGMPGIGKTTSILCL 81

Query: 75  AR-----ELGVNFRSTSGPVIAKAGDLAALLTN-----LEDRDVLFIDEIHRLSIIVEEI 124
           AR              +         +                ++ +DE   ++   ++ 
Sbjct: 82  ARQLLGEAYKEAVLELNASDERGMSRIKGFAQKKVTLPPGRHKIVILDEADSMTPGAQQA 141

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           L   ME +                   S      A  +   +  P+Q R  I       +
Sbjct: 142 LRRTMEIYS------------------STTRFAFACNQSNKIIEPIQSRCAILRYARLTD 183

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD-FAEVAHAKTIT 242
            + +K  +++      +  T++    +   + G  R A   L+     F  V+      
Sbjct: 184 AQVVKR-LKQICDAEKVEHTEDGIAALVFSAEGDMRQAINNLQSTWSGFGLVSGDNVFR 241


>gi|323140458|ref|ZP_08075386.1| DNA polymerase III, subunit gamma and tau [Phascolarctobacterium
           sp. YIT 12067]
 gi|322415026|gb|EFY05817.1| DNA polymerase III, subunit gamma and tau [Phascolarctobacterium
           sp. YIT 12067]
          Length = 608

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 84/223 (37%), Gaps = 25/223 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  +   GQ    + LK  + + K         LF GP G GKT++A+++A+ L    
Sbjct: 11  RPQDFDALVGQKAVKTTLKNALASGKIAHAY----LFSGPRGTGKTSMARILAKALNCE- 65

Query: 83  RSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSII-----VEEILYPAMEDFQLD 135
               GP     G        ++    DV+ ID     S+       E++ +   E     
Sbjct: 66  ---QGPTAEPCGQCGNCQRIVQGTSLDVIEIDAASNTSVDNIRDLREQVAFTPAESRYKV 122

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             ++++   +    I ATT    +   +Q R           ++
Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPAHAVFILATTDPQKVPATIQSRCQ-RFEFRRVTVD 181

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           ++   +   A  +G+    +A   IA+++ G  R A  LL + 
Sbjct: 182 EIAEHLAMVAAGSGIEADADALRLIAIQAEGGMRDALSLLDQC 224


>gi|238751045|ref|ZP_04612541.1| DNA polymerase III subunit gamma [Yersinia rohdei ATCC 43380]
 gi|238710735|gb|EEQ02957.1| DNA polymerase III subunit gamma [Yersinia rohdei ATCC 43380]
          Length = 651

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 47/258 (18%), Positives = 80/258 (31%), Gaps = 57/258 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+ L    
Sbjct: 11  RPKTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCET 66

Query: 83  ------------------------RSTSGPVIAKAGDLAALLTNLE------DRDVLFID 112
                                            K  D   LL N++         V  ID
Sbjct: 67  GITATPCGICANCQEIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS      L   +E+                    +    + ATT    L   +  
Sbjct: 127 EVHMLSRHSFNALLKTLEE------------------PPAHVKFLLATTDPQKLPVTILS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R  +   L   ++E ++  +++      ++    A   +A  + G+ R A  L     D 
Sbjct: 169 RC-LQFHLKVIDVEIIRAQLEKILLAEHISSDARALQLLARAADGSMRDALSL----ADQ 223

Query: 233 AEVAHAKTITREIADAAL 250
           A       +T       L
Sbjct: 224 AIAMGDGHVTTATVSHML 241


>gi|55823095|ref|YP_141536.1| DNA polymerase III subunits gamma and tau [Streptococcus
           thermophilus CNRZ1066]
 gi|116627908|ref|YP_820527.1| DNA polymerase III subunits gamma and tau [Streptococcus
           thermophilus LMD-9]
 gi|55739080|gb|AAV62721.1| DNA polymerase III subunits gamma / tau [Streptococcus thermophilus
           CNRZ1066]
 gi|116101185|gb|ABJ66331.1| DNA polymerase III, tau subunit [Streptococcus thermophilus LMD-9]
 gi|312278488|gb|ADQ63145.1| DNA polymerase III, tau subunit [Streptococcus thermophilus ND03]
          Length = 550

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 53/258 (20%), Positives = 92/258 (35%), Gaps = 27/258 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     R +T  E  GQ    + L+  +E+ K         LF GP G GKT+ A++ A+
Sbjct: 4   ALYRKYRSQTFGEMVGQKVISTTLRQAVESGKISHAY----LFSGPRGTGKTSAAKIFAK 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +    +    P      D+   +TN    DV+ ID      +  +  I ++  Y     
Sbjct: 60  AMNCPNQVDGEPCNHC--DICRDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRA 117

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQD---RFGIPIR 179
                ++ E             ++++        I ATT +  +   +     RF     
Sbjct: 118 TYKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSI 177

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
                 E L +I++      GL   DEA   I+ R+ G  R A  +L +    +   +  
Sbjct: 178 KQGAIKEHLASILE----KEGLTFDDEALTIISRRAEGGMRDALSILDQALSLSADNNVS 233

Query: 240 TITREIADAALLRLAIDK 257
               E    ++   A+D 
Sbjct: 234 QSVAEEITGSIGLTALDS 251


>gi|313885466|ref|ZP_07819216.1| DNA polymerase III, subunit gamma and tau [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619196|gb|EFR30635.1| DNA polymerase III, subunit gamma and tau [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 675

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 83/225 (36%), Gaps = 23/225 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T +E  GQ      LK  +       + L H  LF GP G GKT+ A+++A+ +   
Sbjct: 11  RPQTFDELIGQNVIQQTLKNAV-----MNQQLSHAYLFTGPRGTGKTSAAKILAKAVNCQ 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDL 136
                 P      +   L+   +  D++ ID      +  +  + + + Y A +      
Sbjct: 66  NPQNGNPCNEC--EACRLINEGQMSDIIEIDAASNNGVEEIRDLRDNVRYAASQAKYKVY 123

Query: 137 MVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ++ E             ++++   +    I ATT    +   +  R       +    +D
Sbjct: 124 IIDEVHMLTTGAFNALLKTLEEPPANVLFILATTEPHKIPATIISRTQ-RFDFHRIADKD 182

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           L   +        +A   EA   IA  +RG  R +  LL +   +
Sbjct: 183 LIDRMAYILDTDKIAYDQEALEIIARAARGGMRDSLSLLDQALSY 227


>gi|261491572|ref|ZP_05988155.1| DNA polymerase III subunits gamma and tau [Mannheimia haemolytica
           serotype A2 str. BOVINE]
 gi|261494932|ref|ZP_05991401.1| DNA polymerase III subunits gamma and tau [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261309341|gb|EEY10575.1| DNA polymerase III subunits gamma and tau [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261312698|gb|EEY13818.1| DNA polymerase III subunits gamma and tau [Mannheimia haemolytica
           serotype A2 str. BOVINE]
          Length = 685

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 63/311 (20%), Positives = 102/311 (32%), Gaps = 66/311 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGV- 80
           RP+   E  GQ    S L+  +     R + L H  LF G  G+GKT++A++ A+ L   
Sbjct: 11  RPQRFSEVVGQQHVLSALENSL-----REDRLHHAYLFSGTRGVGKTSIARLFAKGLNCV 65

Query: 81  -----------------------NFRSTSGPVIAKAGDLAALLTNLEDRD------VLFI 111
                                  +          K  D   LL N++ +       V  I
Sbjct: 66  NGITAEPCGECANCKAIEEGHFIDLIEIDAASRTKVEDTRELLDNVQYKPTVGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSRHSFNALLKTLEE------------------PPEYVKFLLATTDPQKLPITIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L   E   +   ++       +     A  ++A  ++G+ R +  L     D
Sbjct: 168 SRC-MQFHLRALEQSQIARHLEFILNAENIPFEPLALEKLAKAAQGSIRDSLSL----TD 222

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVG-IETISAGLS 290
            A       IT  I    L  +       D   L  +  IA+  G   +  IE I+A   
Sbjct: 223 QAIAMSNANITLAIVSQMLGLID------DNQPLELVQAIAQADGEKAMAIIEQIAAKGV 276

Query: 291 EPRDAIEDLIE 301
           + +  + D+ E
Sbjct: 277 DWQQLLSDVAE 287


>gi|148377949|ref|YP_001256825.1| DNA polymerase III subunit gamma and tau [Mycoplasma agalactiae
           PG2]
 gi|148291995|emb|CAL59387.1| DNA polymerase III subunit gamma and TAU [Mycoplasma agalactiae
           PG2]
          Length = 614

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/245 (18%), Positives = 77/245 (31%), Gaps = 53/245 (21%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     RP+  ++  GQ      LK  I     R   + H  LF GP G+GKT++A++ A
Sbjct: 5   ALYRKYRPKCFDDVKGQDYIIQTLKNII-----RNRKISHAYLFCGPRGVGKTSVARIFA 59

Query: 76  RELGVNFR----------------------STSGPVIAKAGDLAALLTNLE------DRD 107
             +                                       +  L   ++      +  
Sbjct: 60  NLINCYHNNDDYSKLCQICEENGSNTIDIIEMDAASNNGVDSIRELRDKIQHLPSVGNYK 119

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           +  IDE+H LS      L   +E+          P A  +         I ATT    + 
Sbjct: 120 IYIIDEVHMLSKGAFNALLKTLEE----------PPAHVI--------FIFATTDPQKIP 161

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             +  R            + L   ++   +  G+    EA   IA  + G+ R A  ++ 
Sbjct: 162 LTILSRVQ-RFNFRRMSNDTLVKQIKSILEQEGIKYDAEALPYIARLAVGSMRDALSIID 220

Query: 228 RVRDF 232
           +   +
Sbjct: 221 QANAY 225


>gi|325977937|ref|YP_004287653.1| DNA polymerase III subunit gamma/tau [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
 gi|325177865|emb|CBZ47909.1| DNA polymerase III subunit gamma/tau [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
          Length = 559

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 46/255 (18%), Positives = 88/255 (34%), Gaps = 21/255 (8%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     R +T +E  GQ    + LK  + + K         LF GP G GKT+ A++ A+
Sbjct: 4   ALYRKYRSQTFDEMVGQTVVSTTLKQAVSSGKISHAY----LFSGPRGTGKTSAAKIFAK 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +    +    P      D+   +TN    DV+ ID      +  +  I ++  Y     
Sbjct: 60  AMNCPNQVNGEPCNHC--DICRDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRA 117

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT +  +   +  R         
Sbjct: 118 TYKVYIIDEVHMLSTGAFNALLKTLEEPTENVIFILATTELHKIPTTILSRVQ-RFEFKA 176

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            ++  ++  +        ++  ++A   IA  + G  R A  +L +        H     
Sbjct: 177 IKLAAIREHLANILDKEEISYEEDALTLIARCAEGGMRDALSILDQALSLTPDNHVSLAI 236

Query: 243 REIADAALLRLAIDK 257
            E    ++   A+D 
Sbjct: 237 AEEITGSISMTALDD 251


>gi|304407484|ref|ZP_07389136.1| Sigma 54 interacting domain protein [Paenibacillus curdlanolyticus
           YK9]
 gi|304343435|gb|EFM09277.1| Sigma 54 interacting domain protein [Paenibacillus curdlanolyticus
           YK9]
          Length = 567

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 63/285 (22%), Positives = 96/285 (33%), Gaps = 64/285 (22%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                 RP+ +++  GQ++    LK  + +A  +     HV+  GPPG+GKT  A+VV  
Sbjct: 58  PLAEKTRPQAMQDIVGQIDGLKALKAALCSANPQ-----HVIIYGPPGVGKTAAARVVLE 112

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR------------------------------ 106
           E   N  S   P  AK  ++ A     ++R                              
Sbjct: 113 EAKKNPASPFLPE-AKFTEIDATTARFDERGIADPLIGSVHDPIYQGAGAMGVAGIPQPK 171

Query: 107 ---------DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS----- 152
                     +LFIDEI  L  I    L   +ED ++ L   E     S   N+      
Sbjct: 172 PGAVTKAHGGILFIDEIGELHPIQLNKLLKVLEDRKVFL---ESAYYNSEDANIPMYVHD 228

Query: 153 --------RFTLIAATTRV-GLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAV 203
                    F L+ ATTR    L   L+ R  + +       E++  I     K  G   
Sbjct: 229 VFQNGLPADFRLVGATTRSPQELPAALRSRC-MEVYFRPLLAEEISQIASNAVKKIGFE- 286

Query: 204 TDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
               A E+  R     R A  +++     A      T+T    + 
Sbjct: 287 PSADAIEVVKRYATNGREAVNVIQLAAGLALSEKRDTLTAADIEW 331


>gi|51245283|ref|YP_065167.1| DNA polymerase III, subunit gamma/tau [Desulfotalea psychrophila
           LSv54]
 gi|50876320|emb|CAG36160.1| related to DNA polymerase III, subunit gamma/tau [Desulfotalea
           psychrophila LSv54]
          Length = 269

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 83/228 (36%), Gaps = 24/228 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T ++  GQ      L    + + AR      ++F G  G+GKTTLA+++A+ +    
Sbjct: 11  RPQTFDQVIGQRPVVKTL----QNSLARDRVAHALIFSGVRGVGKTTLARLMAKAINCEH 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE--------ILYPAMEDFQL 134
           R  +     K      + T     D+  ID     +  ++E           P    +++
Sbjct: 67  RDNNNNPCNKCLSCQEI-TAGSSLDLYEIDGAS--NRGIQEIRELKEKIRFLPTSAKYRI 123

Query: 135 DLM------VGEGPSARSVKINLSR--FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++        E  +A    +         + ATT +  +   +  R            +
Sbjct: 124 VIIDEVHMLTTEAFNALLKTLEEPPEHVYFMFATTEIHKIPITILSRCQQYELKRV-CAD 182

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
           DL    +R     G  +  EA   I   + G+ R    LL +V  F+E
Sbjct: 183 DLSGHFERLIGEEGKEIEKEALALIVREAAGSVRDGLSLLDQVLSFSE 230


>gi|321458492|gb|EFX69559.1| hypothetical protein DAPPUDRAFT_202764 [Daphnia pulex]
          Length = 697

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 52/244 (21%), Positives = 87/244 (35%), Gaps = 21/244 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  EA   LK  +E  K          +    VL VGPPG GKT LA+ VA E 
Sbjct: 256 TFDDVKGVEEAKQELKEIVEFLKNPEKFSTLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 315

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV +   +GP          A  +  L    + R   V+FIDEI  +       +     
Sbjct: 316 GVPYFHAAGPEFDEILVGQGARRVRDLFKAAKMRAPCVIFIDEIDSVGAKRSSSVLHPYA 375

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
           +  ++ ++ E       +       ++ AT R   L   L    RF + +++   +    
Sbjct: 376 NQTINQLLAEMDGFHQNEG----VIVLGATNRRDDLDKALLRPGRFDVEVQVPVPDFAGR 431

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           K I+        LA   +        +  T      L+ +      +     +T +  + 
Sbjct: 432 KEILLHYLSKVKLADDVDVELLARGTTGFTGADIENLVNQAAVRGAIDGVPAVTTKYLEQ 491

Query: 249 ALLR 252
           A  +
Sbjct: 492 ARDK 495


>gi|291616582|ref|YP_003519324.1| DnaX [Pantoea ananatis LMG 20103]
 gi|291151612|gb|ADD76196.1| DnaX [Pantoea ananatis LMG 20103]
          Length = 672

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 57/321 (17%), Positives = 107/321 (33%), Gaps = 31/321 (9%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           + RN           RP+   +  GQ    + L        +        LF G  G+GK
Sbjct: 12  IRRNHMSYQVLARKWRPQAFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGK 67

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY- 126
           TT+A+++A+  G+N  +          D    +      D++ ID   R  +     L  
Sbjct: 68  TTIARLLAK--GLNCETGITATPCGQCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLD 125

Query: 127 -----PAMEDFQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
                PA   F++ L+               ++++   S    + ATT    L   +  R
Sbjct: 126 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPSHVKFLLATTDPQKLPVTILSR 185

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
             +   L   E++ ++  +    +   +A    A   +A  + G+ R A  L     D A
Sbjct: 186 C-LQFHLKALEVDQIRQQLDHVLEQEQIAREPRALQLLARAADGSMRDALSL----TDQA 240

Query: 234 EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR 293
                 ++T       L  L       D+  L  L  +    G   + +   +A      
Sbjct: 241 IAMGEGSVTSATVGTMLGTLD------DEQPLGLLEAVVEGNGEQMMALLAQAASRGVEW 294

Query: 294 DAIEDLIEPYMIQQGFIQRTP 314
           +A+   +   + +   +Q  P
Sbjct: 295 EALLVEMLRLLHRIAMVQLLP 315


>gi|184199929|ref|YP_001854136.1| DNA polymerase III tau subunit [Kocuria rhizophila DC2201]
 gi|183580159|dbj|BAG28630.1| DNA polymerase III gamma/tau subunit [Kocuria rhizophila DC2201]
          Length = 1264

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 55/308 (17%), Positives = 97/308 (31%), Gaps = 41/308 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T E+  GQ      L   +   +         LF GP G GKTT A+++AR
Sbjct: 4   ALYRRYRPETFEDVIGQEHVTEPLMTALRKNRVNHAY----LFSGPRGCGKTTSARILAR 59

Query: 77  ELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAM 129
            L      T+ P        DLA         DV+ +D      +     + E   +  +
Sbjct: 60  CLNCAEGPTATPCGRCESCRDLA--RDGAGSLDVIEMDAASHGGVDHARDLRERATFAPV 117

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            D     ++ E             + V+        I ATT    +   ++ R       
Sbjct: 118 RDRYKIFIIDEAHMVTREGFNALLKIVEEPPEHVKFIFATTEPSKVLTTIRSR-THHYPF 176

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
                E L   +++  +  G++        +     G+ R +  +L ++   ++      
Sbjct: 177 RLVPPEPLMRYLEQLCQEEGVSTEPGVLSLVVRAGGGSVRDSLSVLDQLMAGSDERGISY 236

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV-----GIETISAGLSEPRDA 295
                   AL                 L  +   F  G        ++ +     +PR  
Sbjct: 237 DLA----VAL---------LGYTHAALLDDVVDAFAAGDAATVFSSVDRVVQTGQDPRRF 283

Query: 296 IEDLIEPY 303
           +EDL+E +
Sbjct: 284 VEDLLERF 291


>gi|156742265|ref|YP_001432394.1| DNA polymerase III subunits gamma and tau [Roseiflexus castenholzii
           DSM 13941]
 gi|156233593|gb|ABU58376.1| DNA polymerase III, subunits gamma and tau [Roseiflexus
           castenholzii DSM 13941]
          Length = 644

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 47/255 (18%), Positives = 91/255 (35%), Gaps = 25/255 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     R +T +E  GQ      L+  I   +         LF GP G+GKTT+A+++A+
Sbjct: 5   ALYRRYRSQTFDELIGQEHVVRTLRNAIAEGRVAHAY----LFTGPRGVGKTTVARLLAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE------EILYPAME 130
              VN  +          +    +      DV+ +D     S+             PA+ 
Sbjct: 61  A--VNCTAPPAERPCGVCESCRSIAEGRAVDVIEMDAASHTSVEDAREIIERVQFRPAVA 118

Query: 131 DFQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             ++ ++               ++++        I ATT V  +   +  R       N 
Sbjct: 119 RTKVYIIDEVHMLSTAAFNALLKTLEEPPPHALFILATTEVHKVPATILSRCQ-RFVFNR 177

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           + +  +   ++  A   G+ +   AA  IA  + G+ R A  +L ++  +       T++
Sbjct: 178 HTVASIAAHLRMIATQEGVTLEPGAAEAIARAATGSMRDALSVLDQLMAY----GGGTVS 233

Query: 243 REIADAALLRLAIDK 257
            E     L    + +
Sbjct: 234 LEQVRNLLGASEMQE 248


>gi|71021079|ref|XP_760770.1| hypothetical protein UM04623.1 [Ustilago maydis 521]
 gi|46100247|gb|EAK85480.1| hypothetical protein UM04623.1 [Ustilago maydis 521]
          Length = 341

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 81/233 (34%), Gaps = 39/233 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP TL++     +  S ++ FI+        L H+LF GPPG GKT+    +AR
Sbjct: 23  PWVEKYRPATLDDLVSHKDITSTIQNFID-----KNRLPHLLFYGPPGTGKTSTILAMAR 77

Query: 77  ELGVNFRSTSGPVIAKAGDL---------------AALLTNLEDRDVLFIDEIHRLSIIV 121
           ++       S   +  + D                 ++ ++     ++ +DE   ++   
Sbjct: 78  KIFGPQFRNSVLELNASDDRGIDVVREQIKSFASTKSVFSSKGGFKLIVLDEADAMTQAA 137

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           +  L   +E +                              V  +   +Q R     R N
Sbjct: 138 QGALRRVIEQYT------------------KNVRFCIICNYVNKIIPAIQSRC-TRFRFN 178

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
             E++ ++  +    +  G  +T +    +   SRG  R A  +L+     ++
Sbjct: 179 PLELDQVEDRLNHVIESEGCNITQDGKEALLKLSRGDMRRALNVLQACHAASD 231


>gi|295397253|ref|ZP_06807349.1| DNA polymerase III, gamma/tau subunit DnaX [Aerococcus viridans
           ATCC 11563]
 gi|294974500|gb|EFG50231.1| DNA polymerase III, gamma/tau subunit DnaX [Aerococcus viridans
           ATCC 11563]
          Length = 631

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 83/226 (36%), Gaps = 21/226 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ      L+  I   K         LF GP G GKT+ A+++++ +    
Sbjct: 27  RPQTFGDIVGQEAVARTLQNAIRTGKTSHAY----LFTGPRGTGKTSAAKILSKAINCPN 82

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
           +    P      ++   +T+    DV+ ID      +  +  I +++ Y   E      +
Sbjct: 83  QVDGEPCNEC--EICRAITDGTLPDVIEIDAASNNGVEEIRDIRDKVRYAPTEAQYKVYI 140

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++   +    I ATT    +   +  R            + +
Sbjct: 141 IDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPATIISRTQ-RFDFKRISRQSI 199

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
           +  +       G+   + A   IA  + G  R A  LL +V  F++
Sbjct: 200 EDRMAFILDQDGIEFENGALAVIARAANGGMRDALSLLDQVISFSD 245


>gi|48097300|ref|XP_393747.1| PREDICTED: replication factor C subunit 5-like [Apis mellifera]
          Length = 328

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 54/164 (32%), Gaps = 21/164 (12%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
              S     +   RP+ L++     E    +  FI+        L H+LF GPPG GKT+
Sbjct: 5   PTQSTNLPWVEKYRPKKLDDLISHEEIIKTINKFID-----ENLLPHLLFYGPPGTGKTS 59

Query: 70  LAQVVAR------ELGVNFRSTSGPVIAKAGDLA-ALLTNLEDRD-------VLFIDEIH 115
                AR      +        +         +   +L+             ++ +DE  
Sbjct: 60  TILACARKLYTSAQFNSMVLEMNASDDRGINIVRGQILSFASTGTMYKSGFKLIILDEAD 119

Query: 116 RLSIIVEEILYPAMEDFQ--LDLMVGEGPSARSVKINLSRFTLI 157
            ++   +  L   +E +   +   +     ++ +    SR T  
Sbjct: 120 AMTNDAQNALRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTKF 163


>gi|319942677|ref|ZP_08016984.1| DNA polymerase III [Sutterella wadsworthensis 3_1_45B]
 gi|319803760|gb|EFW00695.1| DNA polymerase III [Sutterella wadsworthensis 3_1_45B]
          Length = 455

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 51/239 (21%), Positives = 82/239 (34%), Gaps = 24/239 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP   E   GQ    + L   +   +     L H  LF G  G+GKTT++++ A+ L   
Sbjct: 30  RPHDFESIVGQDHVVTALTRALTEGR-----LHHAYLFTGTRGVGKTTISRIFAKALNCQ 84

Query: 82  FRSTSGPVIAKA-GDLAALLTNLEDRDVLFIDEIHRLSIIVEEI-------LYPAMEDFQ 133
                G V A   G   A     E R V +I+     +  VE++       +Y   E   
Sbjct: 85  GADGKGGVTAHPCGVCEACRAIDEGRFVDYIEMDAASNRSVEDMTQLLERAMYAPTEGRF 144

Query: 134 LDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
              M+ E             ++++        I ATT    +   +  R  +   L    
Sbjct: 145 KVYMIDEVHMLSSTAFNAMLKTLEEPPEYVKFILATTDPQKVPVTVLSRC-LQFTLRNMT 203

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
              +   ++      G+         IA  +RG+ R A  LL +   F+      T  R
Sbjct: 204 PAGIVEHLEFILGKEGIEYERPGLRLIAEGARGSMRDALSLLDQAIAFSGGKVTDTAVR 262


>gi|148827061|ref|YP_001291814.1| DNA polymerase III subunits gamma and tau [Haemophilus influenzae
           PittGG]
 gi|148718303|gb|ABQ99430.1| DNA polymerase III subunits gamma and tau [Haemophilus influenzae
           PittGG]
          Length = 688

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 52/282 (18%), Positives = 88/282 (31%), Gaps = 65/282 (23%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T  +  GQ    + L     A   +   L H  LF G  G+GKT++A++ A+ L   
Sbjct: 11  RPKTFADVVGQEHIITAL-----ANGLKDNRLHHAYLFSGTRGVGKTSIARLFAKGLNCV 65

Query: 82  F------------------------RSTSGPVIAKAGDLAALLTNLEDRDVL------FI 111
                                             K  D   LL N++ + V+       I
Sbjct: 66  HGVTATPCGECENCKAIEQGNFIDLIEIDAASRTKVEDTRELLDNVQYKPVVGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSRHSFNALLKTLEE------------------PPEYVKFLLATTDPQKLPVTIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L   +   +   +        +   D A  ++A  ++G+ R +  L     D
Sbjct: 168 SRC-LQFHLKALDETQISQHLAHILTQENIPFEDPALVKLAKAAQGSIRDSLSL----TD 222

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIAR 273
            A     + +T  +    L  L       D   +  L  + +
Sbjct: 223 QAIAMGDRQVTNNVVSNMLGLLD------DNYSVDILYALHQ 258


>gi|50286221|ref|XP_445539.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49524844|emb|CAG58450.1| unnamed protein product [Candida glabrata]
          Length = 834

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 53/252 (21%), Positives = 85/252 (33%), Gaps = 21/252 (8%)

Query: 28  EEFTGQVEACSNLKVFIEAAK--ARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRST 85
           ++   Q+     L +           E    VL  GPPG GKT++A  +A EL V F S 
Sbjct: 204 DDVIAQLMELIGLPILHPEIYLSTGVEPPRGVLLHGPPGCGKTSIANALAGELQVPFISI 263

Query: 86  SGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           S P +           +  L    +     ++F DEI  ++   +      ME   +  +
Sbjct: 264 SAPSVVSGMSGESEKKIRELFDEAKSLAPCLMFFDEIDAITPKRDGGAQREMERRIVAQL 323

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRG 195
           +           N     +I AT R   L   L+   RF   I LN         I+++ 
Sbjct: 324 LTSMDELTLSNTNGKPVIVIGATNRPDSLDAALRRAGRFDREICLNVPNEISRLHILKKM 383

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI-----ADAAL 250
           A    +        +    ++ TP   G  L+ +   A     K I            A+
Sbjct: 384 AGKLKID----GEIDFHKLAKLTPGFVGADLKALTTAAGTCAIKRIFETYASIVPNIEAV 439

Query: 251 LRLAIDKMGFDQ 262
             + +DK   D 
Sbjct: 440 EDMDVDKNKLDS 451



 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 78/226 (34%), Gaps = 18/226 (7%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLT 101
           K    A   VL  GPPG GKT LA+ VA E   NF S  GP +           +  + T
Sbjct: 560 KVGISAPGGVLLWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESERAIRQVFT 619

Query: 102 NLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA 159
                   V+F DE+  L    +  +  +       L+           I      ++ A
Sbjct: 620 RARASVPCVIFFDELDALVPRRDTSMSESSSRVVNTLLTELDGLNDRHGI-----FVVGA 674

Query: 160 TTRVGLLTNPLQDRFGIPIRLNFYEI--EDLKTIVQRGAKLTGLA--VTDEAACEIAMRS 215
           T R  ++   +  R G   +  F E+  E  K  + R   ++       D    EI    
Sbjct: 675 TNRPDMIDPAML-RPGRLDKTLFIELPNEQEKFDIIRTLTISNGTPLSKDVDLKEIVADE 733

Query: 216 RGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
           R        L   VR+ + +A  +   +     ++    +DK   D
Sbjct: 734 RCRNFSGADLAALVRESSVLALKRNFFKSEEIQSVGDNDLDKEFED 779


>gi|29830693|ref|NP_825327.1| DNA polymerase III subunits gamma and tau [Streptomyces avermitilis
           MA-4680]
 gi|29607805|dbj|BAC71862.1| putative DNA polymerase III gamma and tau subunit [Streptomyces
           avermitilis MA-4680]
          Length = 846

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 58/173 (33%), Gaps = 22/173 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP +  E  GQ      L+  +   +         LF GP G GKTT A+++AR
Sbjct: 5   ALYRRYRPESFAEVIGQEHVTDPLQQALRNNRVNHAY----LFSGPRGCGKTTSARILAR 60

Query: 77  ELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFIDEIHRLSII------VEEILYPA 128
            L      T  P        DLA         DV+ ID      +        +    PA
Sbjct: 61  CLNCEQGPTPTPCGACQSCQDLA--RNGPGSIDVIEIDAASHGGVDDARDLREKAFFGPA 118

Query: 129 MEDFQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
              +++ ++         G     + V+        I ATT    +   ++ R
Sbjct: 119 GSRYKIYIIDEAHMVTSAGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSR 171


>gi|188994758|ref|YP_001929010.1| DNA polymerase III, gamma and tau subunits [Porphyromonas
           gingivalis ATCC 33277]
 gi|188594438|dbj|BAG33413.1| DNA polymerase III, gamma and tau subunits [Porphyromonas
           gingivalis ATCC 33277]
          Length = 602

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 82/226 (36%), Gaps = 20/226 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP +     GQ    + LK    ++  + +     LF GP G+GKT+ A++ AR +    
Sbjct: 13  RPDSFASMVGQEALSATLK----SSIVQQKTAHAYLFCGPRGVGKTSCARIFARAINCLE 68

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI------IVEEILYPAMEDFQLDL 136
           R   G    +     A         +  +D     S+      I +  + P +  +++ +
Sbjct: 69  RLPDGEACGRCESCKAFDEQRSMN-IYELDAASNNSVDDIRLLIEQANVPPQIGKYKIYI 127

Query: 137 MV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++   S    I ATT    +   +  R  I           +
Sbjct: 128 IDEVHMLSQQAFNAFLKTLEEPPSYVIFILATTEKHKILPTILSRCQIFDFKRI-PPARI 186

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
           +  ++  A   G+    EA   IA ++ G  R A  L  R+  F+E
Sbjct: 187 EQHLRYVADSEGIKAEAEALAIIATKADGGMRDALSLFDRIARFSE 232


>gi|145639210|ref|ZP_01794817.1| DNA polymerase III subunits gamma and tau [Haemophilus influenzae
           PittII]
 gi|145271772|gb|EDK11682.1| DNA polymerase III subunits gamma and tau [Haemophilus influenzae
           PittII]
 gi|309750786|gb|ADO80770.1| DNA polymerase III, subunits gamma and tau [Haemophilus influenzae
           R2866]
          Length = 688

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 52/282 (18%), Positives = 88/282 (31%), Gaps = 65/282 (23%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T  +  GQ    + L     A   +   L H  LF G  G+GKT++A++ A+ L   
Sbjct: 11  RPKTFADVVGQEHIITAL-----ANGLKDNRLHHAYLFSGTRGVGKTSIARLFAKGLNCV 65

Query: 82  F------------------------RSTSGPVIAKAGDLAALLTNLEDRDVL------FI 111
                                             K  D   LL N++ + V+       I
Sbjct: 66  HGVTATPCGECENCKAIEQGNFIDLIEIDAASRTKVEDTRELLDNVQYKPVVGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSRHSFNALLKTLEE------------------PPEYVKFLLATTDPQKLPVTIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L   +   +   +        +   D A  ++A  ++G+ R +  L     D
Sbjct: 168 SRC-LQFHLKALDETQISQHLAHILTQENIPFEDPALVKLAKAAQGSIRDSLSL----TD 222

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIAR 273
            A     + +T  +    L  L       D   +  L  + +
Sbjct: 223 QAIAMGDRQVTNNVVSNMLGLLD------DNYSVDILYALHQ 258


>gi|315657727|ref|ZP_07910607.1| conserved hypothetical protein [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|315491524|gb|EFU81135.1| conserved hypothetical protein [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 798

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 46/161 (28%), Gaps = 39/161 (24%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T E+  GQ      L    +AA A        LF GP G GKTT A+++AR
Sbjct: 4   ALYRRYRPDTFEDVIGQEHVTKAL----QAALANGRVNHAYLFSGPRGCGKTTSARILAR 59

Query: 77  ELGV--------------------------NFRSTSGPVIAKAGDLAALLTNL------E 104
            L                            +             D   L          +
Sbjct: 60  CLNCAQGPTATPCGTCDSCRDLATGGSGSLDVIEIDAASHGGVDDTRELRDRAAYAPARD 119

Query: 105 DRDVLFIDEIHRLSIIVEEILYPAME---DFQLDLMVGEGP 142
              +  IDE H +S      L   +E   D    +     P
Sbjct: 120 RFKIFIIDEAHNVSKEGFNALLKLVEEPPDHIKFIFATTNP 160


>gi|307214991|gb|EFN89836.1| Protein YME1-like protein [Harpegnathos saltator]
          Length = 776

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 55/251 (21%), Positives = 91/251 (36%), Gaps = 22/251 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  EA   L   +E  K          +    VL VGPPG GKT LA+ VA E 
Sbjct: 321 TFNDVKGVDEAKQELLNVVEFLKNPGKFSALGGKLPKGVLLVGPPGTGKTLLARAVAGEA 380

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F   +GP          A  +  L    +++   V+FIDEI  +       +     
Sbjct: 381 GVPFFHVAGPEFDEILVGQGARRVRDLFRAAKEKTPCVVFIDEIDSVGAKRTNSVLHPYA 440

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
           +  ++ ++ E    R  +       ++ AT R   L   L    RF + I +N  +    
Sbjct: 441 NQTINQLLSEMDGFRQNEG----VIVLGATNRRKDLDKALMRPGRFDVEIYVNKPDYSGR 496

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           K I+            D         +  T      ++ +    A +  A+ +T +  + 
Sbjct: 497 KEILDLYLAKILTHDVDTVYLARCT-TGFTGADLENMINQAALRAAIDEAEYVTMKHLEY 555

Query: 249 ALLRLAIDKMG 259
           A  ++ +   G
Sbjct: 556 ARDKVLMGPEG 566


>gi|254670263|emb|CBA05524.1| DNA polymerase III subunit Tau [Neisseria meningitidis alpha153]
          Length = 735

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 48/303 (15%), Positives = 88/303 (29%), Gaps = 63/303 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T  +  GQ      L+  ++  +     L H  L  G  G+GKTT+A+++A+ L   
Sbjct: 40  RPKTFADLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCE 94

Query: 82  FRS------------------------TSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                                ++  +L N +         V  I
Sbjct: 95  NAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYII 154

Query: 112 DEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+H LS      +   +E+    +  ++      +     LSR                
Sbjct: 155 DEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNM------- 207

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
                           + +   +        +     A   +   + G+ R A  LL + 
Sbjct: 208 --------------TAQQVADHLAHVLDSEKITYAPPALQLLGRAAAGSMRDALSLLDQA 253

Query: 230 RDFAEVAHAKTITREIADAALLRLAIDKM-GFDQLDLRYLTMIARNFGGGPVGIETISAG 288
                   A+   R++  A   +   + + G    D   L   A+      VG +     
Sbjct: 254 IALGSGKVAENDVRQMIGAVDKQYLYELLTGIINQDGAALLAKAQEMAACAVGFDN---A 310

Query: 289 LSE 291
           L E
Sbjct: 311 LGE 313


>gi|239501566|ref|ZP_04660876.1| DNA polymerase III subunit tau [Acinetobacter baumannii AB900]
          Length = 698

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 83/257 (32%), Gaps = 53/257 (20%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RPR   E  GQ          + +A  R       LF G  G+GKTT+A+++A+ L
Sbjct: 6   ARKYRPRNFNELVGQNHV----SRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCL 61

Query: 79  GVNFRSTS------------------------GPVIAKAGDLAALLTNL------EDRDV 108
                 TS                             K  D   LL N+          V
Sbjct: 62  NCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKV 121

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
             IDE+H LS      L   +E+                         + ATT    L  
Sbjct: 122 YLIDEVHMLSTHSFNALLKTLEE------------------PPEHVKFLFATTDPQKLPI 163

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            +  R  +   L    ++++   +    +   +A   +A  +IA  ++G+ R A  L  +
Sbjct: 164 TVISRC-LQFTLRPLAVDEITKHLGVILEKEQIAADQDAIWQIAESAQGSLRDALSLTDQ 222

Query: 229 VRDFAEVAHAKTITREI 245
              + + A      +E+
Sbjct: 223 AIAYGQGAVHHQDVKEM 239


>gi|333025585|ref|ZP_08453649.1| putative DNA polymerase III subunits gamma and tau [Streptomyces
           sp. Tu6071]
 gi|332745437|gb|EGJ75878.1| putative DNA polymerase III subunits gamma and tau [Streptomyces
           sp. Tu6071]
          Length = 468

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 58/175 (33%), Gaps = 26/175 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T  E  GQ      L   +   +         LF GP G GKTT A+++AR
Sbjct: 5   ALYRRYRPETFAEVIGQEHVTDPLSQALRNNRVNHAY----LFSGPRGCGKTTSARILAR 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR----DVLFIDEIHRLSII------VEEILY 126
            L        GP     G+  +      +     DV+ ID      +        +    
Sbjct: 61  CLNCE----QGPTPTPCGECQSCQDLARNGPGSIDVIEIDAASHGGVDDARDLREKAFFG 116

Query: 127 PAMEDFQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           PA   +++ ++         G     + V+        I ATT    +   ++ R
Sbjct: 117 PASSRYKIYIIDEAHMVTSAGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSR 171


>gi|332980764|ref|YP_004462205.1| DNA polymerase III subunits gamma and tau [Mahella australiensis
           50-1 BON]
 gi|332698442|gb|AEE95383.1| DNA polymerase III, subunits gamma and tau [Mahella australiensis
           50-1 BON]
          Length = 549

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 55/307 (17%), Positives = 103/307 (33%), Gaps = 32/307 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T ++  GQ      L+  I   +         LF G  G GKT+ A+++AR +    
Sbjct: 11  RPQTFDDVYGQPAVVRTLRHQIMNHRIAHAY----LFCGSRGTGKTSTAKIMARAVNCLS 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P      D+   L++  + D++ ID      +  +  + E++ YP         +
Sbjct: 67  PVDGNP--CGRCDVCTKLSDESNMDIIEIDAASNNGVDEIRDLREKVKYPPTIGRYKIYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT    L   +  R            +D+
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPEHVIFILATTEPHRLPATILSRCQ-RYDFRRISEQDM 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              ++     TG    DEA   IA  ++G  R A  +L +   F        I       
Sbjct: 184 VERMRVILTATGAHAEDEALQLIARSAQGAMRDALSMLDQALSFC----DGNIGYTDVLD 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L     D +         +  +     GG + +   +        A+   I  + ++  
Sbjct: 240 MLGASGTDFVA------GLVDAVIAGDDGGALSLIDQAVDQGRDLTALVREIA-WYVRDL 292

Query: 309 FIQRTPR 315
            I ++ R
Sbjct: 293 MIVKSCR 299


>gi|307707515|ref|ZP_07643997.1| chromosome segregation helicase [Streptococcus mitis NCTC 12261]
 gi|307616467|gb|EFN95658.1| chromosome segregation helicase [Streptococcus mitis NCTC 12261]
          Length = 80

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 3/74 (4%)

Query: 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG-LGKTTLAQVVARELGV 80
          +RP+T+++  GQ       K+     +A   +L   L+  P G +GKT++A  +A     
Sbjct: 1  MRPKTIDQVIGQEHLVGQGKIIRRMVEANRLSLHDSLW--PSGEIGKTSIASAIAGTTKY 58

Query: 81 NFRSTSGPVIAKAG 94
           FR+ +  V +K  
Sbjct: 59 AFRTFNATVDSKKR 72


>gi|256786465|ref|ZP_05524896.1| DNA polymerase III subunits gamma and tau [Streptomyces lividans
           TK24]
          Length = 734

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 59/175 (33%), Gaps = 26/175 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP +  E  GQ      L+  +   +         LF GP G GKTT A+++AR
Sbjct: 5   ALYRRYRPESFAEVIGQGHVTDPLQQALRNNRVNHAY----LFSGPRGCGKTTSARILAR 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR----DVLFIDEIHRLSII------VEEILY 126
            L        GP     G+  +      +     DV+ ID      +        +    
Sbjct: 61  CLNCE----QGPTPTPCGECQSCRDLARNGPGSIDVIEIDAASHGGVDDARDLREKAFFG 116

Query: 127 PAMEDFQLDLMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           PA   +++ ++         G     + V+        I ATT    +   ++ R
Sbjct: 117 PASSRYKIYIIDEAHMVSPQGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSR 171


>gi|114050971|ref|NP_001040148.1| replication factor C (activator 1) 5 [Bombyx mori]
 gi|87248211|gb|ABD36158.1| replication factor C (activator 1) 5 [Bombyx mori]
          Length = 334

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 54/163 (33%), Gaps = 21/163 (12%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
              Q    +   RP+ L++     +    +  F      +   L H+LF GPPG GKT+ 
Sbjct: 5   ETGQNLPWVEKYRPKRLDDLVSHDDIIKTINQF-----MKENQLPHLLFYGPPGTGKTST 59

Query: 71  AQVVAREL------GVNFRSTSGPVIAKAGDLA-ALLTNLEDRDVL-------FIDEIHR 116
               A+++             +       G +   +L+    R +         +DE   
Sbjct: 60  ILACAKQMYTPQQFSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADA 119

Query: 117 LSIIVEEILYPAMEDFQ--LDLMVGEGPSARSVKINLSRFTLI 157
           ++   +  L   +E +   +   +      + +    SR T  
Sbjct: 120 MTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRF 162


>gi|308487512|ref|XP_003105951.1| CRE-RFC-4 protein [Caenorhabditis remanei]
 gi|308254525|gb|EFO98477.1| CRE-RFC-4 protein [Caenorhabditis remanei]
          Length = 362

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 89/244 (36%), Gaps = 21/244 (8%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M  +  +    S+        RP+TL++   Q E  + LK  ++      + L H+LF G
Sbjct: 1   MAEQIQVDNKKSKVLTWTEKYRPKTLDDIAHQDEVVTMLKGALQ-----GKDLPHLLFYG 55

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAAL--LTNLEDRDVLFID----EIH 115
           PPG GKT+ A    R+L          +   A D   +  +     R ++ +     +I 
Sbjct: 56  PPGTGKTSTALAFCRQLFPRNIFQDRVLDLNASDERGISVVRQKVSRFIVLLSNHSLQIQ 115

Query: 116 RLSII------VEEIL-YPAMEDFQLDLMVGEGPSARSVKI-NLSRFT-LIAATTRVGLL 166
             S         E++L    +   ++D M  E  +A    I + S+ T  I     V  L
Sbjct: 116 SFSKTTLSTNCKEDVLKLKIIILDEVDAMTREAQAAMRRVIEDFSKTTRFILICNYVSRL 175

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
             P+  R     R      E     ++         ++++   ++   S G  R A   L
Sbjct: 176 IPPVVSRCA-KFRFKSLPSEVQVQRLRTICDAEETPMSNDELMQVMEYSEGDLRRAVCTL 234

Query: 227 RRVR 230
           + + 
Sbjct: 235 QSLA 238


>gi|239825603|ref|YP_002948227.1| DNA polymerase III subunits gamma/tau [Geobacillus sp. WCH70]
 gi|239805896|gb|ACS22961.1| DNA polymerase III, subunits gamma and tau [Geobacillus sp. WCH70]
          Length = 561

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 85/234 (36%), Gaps = 25/234 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RP+   +  GQ      L    ++A  + +     LF GP G GKT+ A+++A+
Sbjct: 5   ALYRVFRPQRFADVVGQEHVTKTL----QSALLQNKISHAYLFSGPRGTGKTSAAKILAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAAL--LTNLEDRDVLFIDEIHR-----LSIIVEEILYPAM 129
            +         P      +  A   +TN    DVL ID         +  I +++ +   
Sbjct: 61  AVNCEH----APTAEPCNECPACIGITNGAIPDVLEIDAASNNRVDEIRDIRDKVKFAPT 116

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                  ++ E             ++++        I ATT    +   +  R       
Sbjct: 117 SVRYKVYIIDEVHMLSIGAFNALLKTLEEPPKHVIFILATTEPHKIPLTIISRCQ-RFDF 175

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
               +  +   +++  +  G+  +DEA   IA  + G  R A  LL +   F++
Sbjct: 176 RRIPLHSIVARLRQVIEQQGIKASDEALFAIARAADGGMRDALSLLDQAISFSD 229


>gi|21222469|ref|NP_628248.1| DNA polymerase III subunits gamma and tau [Streptomyces coelicolor
           A3(2)]
 gi|5918469|emb|CAB56347.1| DNA polymerase III subunit gamma [Streptomyces coelicolor A3(2)]
          Length = 784

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 59/175 (33%), Gaps = 26/175 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP +  E  GQ      L+  +   +         LF GP G GKTT A+++AR
Sbjct: 5   ALYRRYRPESFAEVIGQGHVTDPLQQALRNNRVNHAY----LFSGPRGCGKTTSARILAR 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR----DVLFIDEIHRLSII------VEEILY 126
            L        GP     G+  +      +     DV+ ID      +        +    
Sbjct: 61  CLNCE----QGPTPTPCGECQSCRDLARNGPGSIDVIEIDAASHGGVDDARDLREKAFFG 116

Query: 127 PAMEDFQLDLMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           PA   +++ ++         G     + V+        I ATT    +   ++ R
Sbjct: 117 PASSRYKIYIIDEAHMVSPQGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSR 171


>gi|167626879|ref|YP_001677379.1| DNA-directed DNA polymerase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167596880|gb|ABZ86878.1| DNA-directed DNA polymerase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 551

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 80/249 (32%), Gaps = 57/249 (22%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP++  E  GQ  A ++L   +E  K         LF G  G+GKTTL +++A+
Sbjct: 5   ALARKYRPQSFSEVAGQQHALNSLVHALETQKVHHAY----LFTGTRGVGKTTLGRLLAK 60

Query: 77  ELGVNF------------------------RSTSGPVIAKAGDLAALLTNLE------DR 106
            L                                        +   +L N++        
Sbjct: 61  CLNCKTGVTAEPCNKCENCLAINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRY 120

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164
            V  IDE+H LS      L   +E+    +  ++      +     LSR   +       
Sbjct: 121 KVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQ 180

Query: 165 LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGR 224
                              +I+D   +V        ++  +++   IA  ++G+ R A  
Sbjct: 181 S------------------DIKDQLKVV---LNKENISSDEQSLDYIAYHAKGSLRDALS 219

Query: 225 LLRRVRDFA 233
           LL +   F 
Sbjct: 220 LLDQAISFC 228


>gi|330837881|ref|YP_004412461.1| DNA polymerase III, subunits gamma and tau [Selenomonas sputigena
           ATCC 35185]
 gi|329745645|gb|AEB99001.1| DNA polymerase III, subunits gamma and tau [Selenomonas sputigena
           ATCC 35185]
          Length = 664

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 57/284 (20%), Positives = 98/284 (34%), Gaps = 37/284 (13%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP + ++  GQ      L   I A +         LF GP G GKT+ A+++A+ L    
Sbjct: 11  RPGSFKDLVGQTAVSRTLSHAISAGRIAHAY----LFSGPRGTGKTSTAKILAKSLNCEK 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDR--DVLFID-----EIHRLSIIVEEILYPAMEDFQLD 135
               GP     G         +    DV  ID      I  +  + E++ +   E     
Sbjct: 67  ----GPTPEPCGVCKNCTKIADGTALDVFEIDAASNRGIDEMRDLREKVKFTPAEGRYKV 122

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             ++++   +    I ATT    +   +Q R           +E
Sbjct: 123 YIIDEVHMLTTEAFNALLKTLEEPPAHVVFILATTEPHKVPATIQSRCQ-RFDFRRITVE 181

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +++  +   A+   +    EA   IA ++ G  R A  LL    D        T+T    
Sbjct: 182 EIEARLAYVAQEMKIPCEKEALRLIARQADGGMRDALSLL----DQCASLDGDTLTAACV 237

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
           +  L  +  + +       R    I     G    +ETI+  L+
Sbjct: 238 EENLGLIGHEPI------YRLTKAIGERAKGEV--LETIAELLA 273


>gi|326512276|dbj|BAJ96119.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 335

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 52/260 (20%), Positives = 84/260 (32%), Gaps = 39/260 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP  + +  G  +A S L+V      AR   + +++  GPPG GKTT    +A 
Sbjct: 19  PWVEKYRPSRVADVVGNADAVSRLEVI-----ARDGNMPNLILSGPPGTGKTTSILALAH 73

Query: 77  EL------------GVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIHRLSIIVE 122
           E+              +       V  K    A     L      ++ +DE   ++   +
Sbjct: 74  EMLGPSYREGVLELNASDDRGLDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTTGAQ 133

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           + L   ME +                 N +RF L   T+    +  P+Q R  I      
Sbjct: 134 QALRRTMEIYS----------------NTTRFALACNTS--SKIIEPIQSRCAIVRFSRL 175

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR-RVRDFAEVAHAKTI 241
            + E L  ++   A    +    E    I   + G  R A   L+  V  F  V      
Sbjct: 176 SDQEILGRLMVVVAAE-KVPYVPEGLEAIIFTADGDMRQALNNLQATVSGFRFVNQENVF 234

Query: 242 TREIADAALLRLAIDKMGFD 261
                   L   ++ K   D
Sbjct: 235 KVCDQPHPLHVKSMVKNVLD 254


>gi|260574231|ref|ZP_05842236.1| DNA polymerase III, subunits gamma and tau [Rhodobacter sp. SW2]
 gi|259023697|gb|EEW26988.1| DNA polymerase III, subunits gamma and tau [Rhodobacter sp. SW2]
          Length = 577

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 62/300 (20%), Positives = 105/300 (35%), Gaps = 31/300 (10%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T  +  GQ      LK    A +         +  G  G+GKTT A+++A+ L
Sbjct: 13  ARKYRPATFADLIGQEAMVRTLKNAFAADRIAHA----FVMTGVRGVGKTTTARIIAKGL 68

Query: 79  GV-NFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSI-----IVEEILYPAME 130
                    GP     G         E R  DV+ +D   R  +     +++ + Y A  
Sbjct: 69  NCIGPDGKGGPTTEPCGVCEPCRAIAEGRHVDVMEMDAASRTGVGDIREVIDSVHYRAAS 128

Query: 131 DFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
                 ++ E             ++++   +    I ATT +  +   +  R      L 
Sbjct: 129 ARYKIYIIDEVHMLSNAAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLSRCQ-RFDLK 187

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
             E E + T + R A L G ++  +A   I   + G+ R A  L+    D A    A   
Sbjct: 188 RIEPEVMLTHLARIAALEGASLAPDALALITRAAEGSVRDAMSLM----DQAIAHGAGET 243

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           +     A L      ++  D  DL    ++  +  G    +    A  ++P   + DL E
Sbjct: 244 SAAQVRAMLGLADRGRV-LDLFDL----VMKGDAAGALSELSAQYADGADPMAVLRDLAE 298


>gi|146324243|ref|XP_753175.2| replication factor C subunit [Aspergillus fumigatus Af293]
 gi|129557997|gb|EAL91137.2| replication factor C subunit [Aspergillus fumigatus Af293]
 gi|159127094|gb|EDP52210.1| replication factor C subunit [Aspergillus fumigatus A1163]
          Length = 389

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 47/236 (19%), Positives = 79/236 (33%), Gaps = 34/236 (14%)

Query: 9   SRNVSQED--ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           S     +D        RP TL++  GQ E  S LK F            H+LF GPPG G
Sbjct: 10  SSTAETDDVLPWQDKYRPATLKQVVGQDETLSVLKSF-----MIHRKFPHLLFHGPPGTG 64

Query: 67  KTTLAQVVARE------LGVNFRSTSGPVIAKAGDLAALLTN-LEDRDVLFIDEIHRLSI 119
           KT+    +AR+      +       +        D+   +      R +          +
Sbjct: 65  KTSTILALARQLYGDADMSQMVLELNASDDRSVHDVQIRIKAFASTRPI--------FKV 116

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRF--------TLIAATTRVGLLTNPLQ 171
            + E        F+L ++        + ++ L R              T  +  L   L 
Sbjct: 117 PLRE---SPYNMFKLVILDEADTMDHTAQMALRRIIEDYAAFTRFCIITNNIHKLLPALI 173

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
            R    +R        ++T++ + A    + V  EA   ++  S G  R A  +L+
Sbjct: 174 SRCA-RLRFPPLRPSAIRTLLLQVATTENIQVRPEALEYLSTTSHGDMRQALAVLQ 228


>gi|56707355|ref|YP_169251.1| DNA polymerase III, gamma/tau subunits [Francisella tularensis
           subsp. tularensis SCHU S4]
 gi|110669825|ref|YP_666382.1| DNA polymerase III, gamma/tau subunits [Francisella tularensis
           subsp. tularensis FSC198]
 gi|224456423|ref|ZP_03664896.1| DNA polymerase III, gamma/tau subunits [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|254370941|ref|ZP_04986946.1| DNA-directed DNA polymerase [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254874189|ref|ZP_05246899.1| DNA-directed DNA polymerase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|56603847|emb|CAG44823.1| DNA polymerase III, gamma/tau subunits [Francisella tularensis
           subsp. tularensis SCHU S4]
 gi|110320158|emb|CAL08206.1| DNA polymerase III, gamma/tau subunits [Francisella tularensis
           subsp. tularensis FSC198]
 gi|151569184|gb|EDN34838.1| DNA-directed DNA polymerase [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840188|gb|EET18624.1| DNA-directed DNA polymerase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282158487|gb|ADA77878.1| DNA polymerase III, gamma/tau subunits [Francisella tularensis
           subsp. tularensis NE061598]
          Length = 546

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 79/249 (31%), Gaps = 57/249 (22%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP++  E  GQ  A ++L   +E  K         LF G  G+GKTTL +++A+
Sbjct: 5   ALARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAY----LFTGTRGVGKTTLGRLLAK 60

Query: 77  ELGVNF------------------------RSTSGPVIAKAGDLAALLTNLE------DR 106
            L                                        +   +L N++        
Sbjct: 61  CLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAASRTGVEETKEILYNIQYMPSQGRY 120

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164
            V  IDE+H LS      L   +E+    +  ++      +     LSR   +       
Sbjct: 121 KVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQ 180

Query: 165 LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGR 224
                              +I+D   I+        +   +++   IA  ++G+ R A  
Sbjct: 181 A------------------DIKDQLKII---LAKENINSDEQSLEYIAYHAKGSLRDALS 219

Query: 225 LLRRVRDFA 233
           LL +   F 
Sbjct: 220 LLDQAISFC 228


>gi|260655563|ref|ZP_05861051.1| DNA polymerase III gamma and tau subunit [Jonquetella anthropi
           E3_33 E1]
 gi|260630011|gb|EEX48205.1| DNA polymerase III gamma and tau subunit [Jonquetella anthropi
           E3_33 E1]
          Length = 648

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 53/261 (20%), Positives = 91/261 (34%), Gaps = 33/261 (12%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
              RP++  +  GQ  A       I  + +        LF GP G GKTT+A+++A+ + 
Sbjct: 7   RRYRPQSFSDVVGQTVAVD----VITRSLSSGRIGHAYLFSGPRGCGKTTVARLLAKAVN 62

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEIL-----YPAMEDF 132
              R+ + P     G   + L   + R  DV+ ID     ++     L       +    
Sbjct: 63  CTARNGAEP----CGQCQSCLAIRDGRSLDVVEIDGASNNTVDEVRELKANVGLASFGGN 118

Query: 133 QLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
               ++ E             ++++    R   I ATT    +   ++ R    I  +  
Sbjct: 119 WKVYIIDEVHMLSASAFNALLKTLEEPPERVMFILATTEPHKVPATIRSRCQ-HIPFHGL 177

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF--------AEV 235
            + D+ + ++      GL+   EA  EIA  S G  R    LL +V           A  
Sbjct: 178 SVPDIVSQLKDVTAREGLSAESEALWEIARSSDGGMRDGLSLLEQVIALGGGSVTKAAVS 237

Query: 236 AHAKTITREIADAALLRLAID 256
                 + E   + L     D
Sbjct: 238 QLTGGGSTEEIQSWLSLCRTD 258


>gi|218708914|ref|YP_002416535.1| DNA polymerase III subunits gamma and tau [Vibrio splendidus LGP32]
 gi|218321933|emb|CAV17928.1| DNA polymerase III subunit tau [Vibrio splendidus LGP32]
          Length = 752

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 55/265 (20%), Positives = 90/265 (33%), Gaps = 35/265 (13%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP   +E  GQ    + L    E A ++       LF G  G+GKTT+ ++ A+ L    
Sbjct: 11  RPTKFKEVVGQAHVLTAL----ENALSQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCET 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILY------PAMEDFQL 134
             TS P     G+ A      E R  D+L ID   R  +     L       PA   F++
Sbjct: 67  GITSTP----CGECATCKEIDEGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRFKV 122

Query: 135 DLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            L+               ++++        + ATT    L   +  R  +   L    ++
Sbjct: 123 YLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRC-LQFHLKPISVD 181

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           ++   +    +   +     A   IA  + G+ R A  L     D A       +  +  
Sbjct: 182 NIHEQLDHILEQENVTSEPRALGMIAHAADGSMRDALSL----SDQAIALGNGNVVTDTV 237

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMI 271
              L  L  D+       +  L  I
Sbjct: 238 AHMLGTLDTDQA------IHLLEAI 256


>gi|148559186|ref|YP_001258081.1| DNA polymerase III subunits gamma and tau [Brucella ovis ATCC
           25840]
 gi|148370443|gb|ABQ60422.1| replication factor C conserved domain:ATP/GTP-binding site motif A
           [Brucella ovis ATCC 25840]
          Length = 602

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 90/248 (36%), Gaps = 25/248 (10%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+  ++  GQ      +   +  A  R       +  G  G+GKTT A+++AR L
Sbjct: 14  ARKYRPQNFDDLIGQE----PMVRTLRNAFERGRIAQAWMLTGVRGVGKTTTARILARAL 69

Query: 79  GVNFRSTSGPVI--AKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
                +   P I  +  G+    +      DV+ +D      I  +  I+E++ Y  +  
Sbjct: 70  NYKTDTVDQPTIDLSTPGEHCQAIMEGRHVDVIEMDAASHTGIDDIREIIEQVRYRPVSA 129

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT +  +   +  R      L  
Sbjct: 130 RYKVYIIDEVHMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKVPITVLSRCQ-RFDLRR 188

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            E   L   ++R A+   + V D +   IA    G+ R +  +     D A    A ++T
Sbjct: 189 IESGTLAQHLRRIAEAEKIEVDDASLAMIARAGEGSARDSLSIF----DQAIAHGADSVT 244

Query: 243 REIADAAL 250
            E   + L
Sbjct: 245 AEAVRSML 252


>gi|284161864|ref|YP_003400487.1| ATPase AAA [Archaeoglobus profundus DSM 5631]
 gi|284011861|gb|ADB57814.1| AAA ATPase central domain protein [Archaeoglobus profundus DSM
           5631]
          Length = 349

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 52/240 (21%), Positives = 93/240 (38%), Gaps = 17/240 (7%)

Query: 26  TLEEFTGQVEACSNLKVFIEAA----KARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
            +E+  GQ EA   ++V ++      K    A  +VLF GPPG GKT  A+ +A E  V 
Sbjct: 100 KIEDVVGQEEAKKKVRVILKYLQNPEKFGKWAPKNVLFYGPPGTGKTMTAKALANEANVP 159

Query: 82  FRSTSGPVI--AKAGDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAMEDFQ 133
           F S     +     GD A  +  L +R       ++F+DE   +++              
Sbjct: 160 FISVKSTKLIGEHVGDGARRIHELYERARQVAPCIVFLDEFDSIALDRSYQDLRGDVSEV 219

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           ++ ++ E       +        IAAT R+ L+   ++ RF   I      +E+   I++
Sbjct: 220 VNALLTELDGIEKNEG----ICTIAATNRIELIDPSIRSRFEEEIEFTLPSLEERLKILE 275

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPR-IAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
              +   L V         +    + R +  ++++     A     + I  E    A+ R
Sbjct: 276 NNFRDFPLKVRANLKVIAEITEGFSGRDLVEKVIKSALHKAIAEEREYIGTEDLVKAVER 335


>gi|256077102|ref|XP_002574847.1| replication factor C / DNA polymerase III gamma-tau subunit
           [Schistosoma mansoni]
 gi|238660062|emb|CAZ31080.1| replication factor C / DNA polymerase III gamma-tau subunit,
           putative [Schistosoma mansoni]
          Length = 468

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 80/228 (35%), Gaps = 40/228 (17%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   +   RP  LE+  G       L VF     AR   L +++  GPPG GKTT    +
Sbjct: 152 ESPWVEKYRPIELEDIVGNENTICRLSVF-----ARDGNLPNIIIAGPPGCGKTTSILCL 206

Query: 75  AR------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIHRLSII 120
           AR            EL  +       V  K    A    +L    + ++ +DE   ++  
Sbjct: 207 ARTLLKSAYKEAVLELNASNERGIEVVRTKIKMFAQKKVSLPEGRQKIIILDEADSMTEG 266

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIA-ATTRVGLLTNPLQDRFGIPIR 179
            ++ L                   R +    SR T  A A      L  P+Q R  +   
Sbjct: 267 AQQAL-------------------RRIMELYSRTTRFALACNDSSKLIEPIQSRCAVLRY 307

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
                 + +  +++  ++  G++ T+E    I   + G  R A   L+
Sbjct: 308 ARLTSAQVMARLLE-VSRFEGVSYTEEGLEAIVFTADGDMRQALNNLQ 354


>gi|303271571|ref|XP_003055147.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226463121|gb|EEH60399.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 941

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 52/248 (20%), Positives = 88/248 (35%), Gaps = 23/248 (9%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +T ++  G  EA   L+  +E  K          +    VL  GPPG GKT LA+ VA E
Sbjct: 437 KTFKDVLGCDEAKEELQEIVEYLKNPDLFTRLGGKLPKGVLLSGPPGTGKTLLARAVAGE 496

Query: 78  LGVNFRSTSGPVIA------KAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
            GV F   +G           +  +  L    + +   ++FIDEI  +    +   +   
Sbjct: 497 AGVPFFYRAGSEFEEMFVGVGSKRVRQLFAAAKKKTPCIVFIDEIDAVGTSRK--AFETQ 554

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
               L+ ++ E       +       +IAAT     L   L    RF   I +   +I  
Sbjct: 555 SRKTLNQLLTEMDGFEQNEG----IIVIAATNIPEQLDPALTRPGRFDRLIHVPNPDIGG 610

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            + I++       +A+  +        +  +      L+      A VA    I     +
Sbjct: 611 RREILRHYLADKPVALDVDVETLARGTAGFSGAELFNLVNIAAVQAAVAGETVIDAARLE 670

Query: 248 AALLRLAI 255
            A  R+ +
Sbjct: 671 WAKDRIVM 678


>gi|169633760|ref|YP_001707496.1| DNA polymerase III, tau and gamma subunits (DNA elongation factor
           III) [Acinetobacter baumannii SDF]
 gi|169152552|emb|CAP01532.1| DNA polymerase III, tau and gamma subunits (DNA elongation factor
           III) [Acinetobacter baumannii]
          Length = 682

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 53/258 (20%), Positives = 86/258 (33%), Gaps = 55/258 (21%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARE 77
               RPR   E  GQ      L   +E+ +     L H  LF G  G+GKTT+A+++A+ 
Sbjct: 6   ARKYRPRNFNELVGQNHVSRALSSALESGR-----LHHAYLFTGTRGVGKTTIARILAKC 60

Query: 78  LGVNFRSTS------------------------GPVIAKAGDLAALLTNL------EDRD 107
           L      TS                             K  D   LL N+          
Sbjct: 61  LNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFK 120

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           V  IDE+H LS      L   +E+                         + ATT    L 
Sbjct: 121 VYLIDEVHMLSTHSFNALLKTLEE------------------PPEHVKFLFATTDPQKLP 162

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             +  R  +   L    ++++   +    +   +A   +A  +IA  ++G+ R A  L  
Sbjct: 163 ITVISRC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALSLTD 221

Query: 228 RVRDFAEVAHAKTITREI 245
           +   + + A      +E+
Sbjct: 222 QAIAYGQGAVHHQDVKEM 239


>gi|52317098|ref|NP_999902.2| replication factor C subunit 4 [Danio rerio]
 gi|49619077|gb|AAT68123.1| replication factor C subunit RFC4 [Danio rerio]
          Length = 358

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 75/232 (32%), Gaps = 45/232 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+ ++E   Q E  + LK  +E A      L ++LF GPPG GKT+     AR
Sbjct: 34  PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGAD-----LPNLLFYGPPGTGKTSTILAAAR 88

Query: 77  E------LGVNFRSTSGP------VIAKAGDLAALLTNLEDRD---------VLFIDEIH 115
           E              +        V+ +     A LT    R          ++ +DE  
Sbjct: 89  ELYGPDLYRQRVLELNASDERGIQVVREKVKRFAQLTVAGTRPDGKTCPPFKIIILDEAD 148

Query: 116 RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
            ++   +  L   ME             +R+ +  L           V  +  PL  R  
Sbjct: 149 SMTSAAQAALRRTMEK-----------ESRTTRFCL-------ICNYVSRIIEPLTSRCS 190

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
                        + I++   +   L  T E    +   S G  R A   L+
Sbjct: 191 KFRFKPLANDVQQERILE-ICRKENLKYTTEGVDALVRVSEGDLRKAITFLQ 241


>gi|161527748|ref|YP_001581574.1| replication factor C [Nitrosopumilus maritimus SCM1]
 gi|160339049|gb|ABX12136.1| Replication factor C [Nitrosopumilus maritimus SCM1]
          Length = 316

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 48/256 (18%), Positives = 83/256 (32%), Gaps = 36/256 (14%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR- 76
            +   RP  L E   Q E   +L+  I         + H+LF G  G+GKTT A  ++R 
Sbjct: 7   WVEKYRPMKLSEVVNQTEIIGSLEALI----KDPTDMPHLLFSGSAGVGKTTTALCISRQ 62

Query: 77  -----------ELGVNFRSTSGPVIAKAGDLAALLTNLE-DRDVLFIDEIHRLSIIVEEI 124
                      EL  +     G V  K    +      +    ++ +DE   ++   +  
Sbjct: 63  ILGDYAKDYTLELNASDERGIGMVREKVKKFSRYAGMADVPFKIIILDEADEMTSDAQTA 122

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           L   +ED                   + RF LIA    +  + +P+Q R          E
Sbjct: 123 LRRIIED----------------TAKICRFILIA--NNISKIIDPIQSRCATFKFTAVPE 164

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            + +K  ++  AK   +    +    I   S G  R A  L++       ++        
Sbjct: 165 EDVIKR-LEEIAKKEKVKADKKGLKAIYDYSEGDLRHAINLMQATASLGSISEDNVKASA 223

Query: 245 IADAALLRLAIDKMGF 260
                     + K+  
Sbjct: 224 GLTKTTDVDEVLKIAL 239


>gi|83645393|ref|YP_433828.1| DNA polymerase III subunits gamma and tau [Hahella chejuensis KCTC
           2396]
 gi|83633436|gb|ABC29403.1| DNA polymerase III, gamma/tau subunit [Hahella chejuensis KCTC
           2396]
          Length = 735

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/240 (18%), Positives = 79/240 (32%), Gaps = 27/240 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP    E  GQ      L   +       + L H  LF G  G+GKTT+A++ A+ L   
Sbjct: 11  RPGNFAEMAGQEHVLKALTNAL-----NQDRLHHAYLFTGTRGVGKTTVARIFAKCLNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYP-----AMEDFQL 134
              ++ P     G+        E R  D++ ID   R  +     L              
Sbjct: 66  QGVSAIP----CGECGVCREIAEGRFVDLIEIDAASRTKVEDMRELLDNVQYAPTRSRYK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             ++ E             ++++        + ATT    L   +  R  +   L     
Sbjct: 122 IYLIDEVHMLSNSSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSRC-LQFNLKNLSP 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           + + + +    +   +   + A  E+A  + G+ R A  L  +   F +         E+
Sbjct: 181 QRIVSHLTHVLQAENVPAEEAALWELARAAEGSMRDAMSLTDQAIAFGDGKLEAKDVIEM 240


>gi|34541094|ref|NP_905573.1| DNA polymerase III subunits gamma and tau [Porphyromonas gingivalis
           W83]
 gi|34397409|gb|AAQ66472.1| DNA polymerase III, gamma and tau subunits [Porphyromonas
           gingivalis W83]
          Length = 602

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 82/226 (36%), Gaps = 20/226 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP +     GQ    + LK    ++  + +     LF GP G+GKT+ A++ AR +    
Sbjct: 13  RPDSFASMVGQEALSATLK----SSIVQQKTAHAYLFCGPRGVGKTSCARIFARAINCLE 68

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI------IVEEILYPAMEDFQLDL 136
           R   G    +     A         +  +D     S+      I +  + P +  +++ +
Sbjct: 69  RLPDGEACGRCESCKAFDEQRSMN-IYELDAASNNSVDDIRLLIEQANVPPQIGKYKIYI 127

Query: 137 MV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++   S    I ATT    +   +  R  I           +
Sbjct: 128 IDEVHMLSQQAFNAFLKTLEEPPSYVIFILATTEKHKILPTILSRCQIFDFKRI-PPARI 186

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
           +  ++  A   G+    EA   IA ++ G  R A  L  R+  F+E
Sbjct: 187 EQHLRYVADSEGIKAEAEALAIIATKADGGMRDALSLFDRIARFSE 232


>gi|238788050|ref|ZP_04631846.1| DNA polymerase III subunit gamma [Yersinia frederiksenii ATCC
           33641]
 gi|238723998|gb|EEQ15642.1| DNA polymerase III subunit gamma [Yersinia frederiksenii ATCC
           33641]
          Length = 655

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 48/258 (18%), Positives = 83/258 (32%), Gaps = 57/258 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKTT+A+++A+ L    
Sbjct: 11  RPKTFLDVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTTIARLLAKGLNCET 66

Query: 83  ------------------------RSTSGPVIAKAGDLAALLTNLE------DRDVLFID 112
                                            K  D   LL N++         V  ID
Sbjct: 67  GITATPCGVCANCQEIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS      L   +E+                    +    + ATT    L   +  
Sbjct: 127 EVHMLSRHSFNALLKTLEE------------------PPAHVKFLLATTDPQKLPVTILS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R  +   L   ++E ++ ++++  +   ++    A   +A  + G+ R A  L     D 
Sbjct: 169 RC-LQFHLKVIDVEVIRALLEKILQAEQISSDARALQLLARAADGSMRDALSL----TDQ 223

Query: 233 AEVAHAKTITREIADAAL 250
           A      ++T       L
Sbjct: 224 AIAMGDGSVTTTTVSQML 241


>gi|308389548|gb|ADO31868.1| DNA polymerase III tau and gamma chains [Neisseria meningitidis
           alpha710]
 gi|325132376|gb|EGC55069.1| DNA polymerase III, subunits gamma and tau [Neisseria meningitidis
           M6190]
          Length = 738

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 50/303 (16%), Positives = 91/303 (30%), Gaps = 63/303 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T  +  GQ      L+  ++  +     L H  L  G  G+GKTT+A+++A+ L   
Sbjct: 40  RPKTFSDLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCE 94

Query: 82  FRS------------------------TSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                                ++  +L N +         V  I
Sbjct: 95  NAQHGEPCGVCESCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYII 154

Query: 112 DEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+H LS      +   +E+    +  ++      +     LSR                
Sbjct: 155 DEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLHNM------- 207

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
                           + +   +        +A    A   +   + G+ R A  LL + 
Sbjct: 208 --------------TSQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQA 253

Query: 230 RDFAEVAHAKTITREIADAALLRLAIDKM-GFDQLDLRYLTMIARNFGGGPVGIETISAG 288
                 + A+   R++  A   +   + + G    D   LT  A+      VG +     
Sbjct: 254 IAMGSGSVAEQDVRQMIGAVDKQYLYELLTGIINQDGAALTAKAQEMAACAVGFDN---A 310

Query: 289 LSE 291
           L E
Sbjct: 311 LGE 313


>gi|302669596|ref|YP_003829556.1| DNA polymerase III gamma and tau subunits DnaX1 [Butyrivibrio
           proteoclasticus B316]
 gi|302394069|gb|ADL32974.1| DNA polymerase III gamma and tau subunits DnaX1 [Butyrivibrio
           proteoclasticus B316]
          Length = 533

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 88/230 (38%), Gaps = 21/230 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP   E+  GQ    + LK  I++ +         LF G  G GKT++A+++AR
Sbjct: 5   ALYRKFRPPVFEDVKGQDHIVTTLKNQIKSDRVGHAY----LFCGTRGTGKTSVAKILAR 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +         P      ++   +      +V+ ID      +  +  I++E+ Y   + 
Sbjct: 61  AVNCENPVDGSP--CGQCEMCREIAAGNSMNVIEIDAASNNGVDNVREIIDEVSYSPTKG 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
            +   ++ E             ++++   S    I ATT V  L   +  R       + 
Sbjct: 119 KKKVYIIDEVHMLSTGAFNALLKTLEEPPSYVMFILATTEVQKLPITILSRCQ-RYDFHR 177

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
             I+ ++  ++      G+ V D A   +A  + G+ R +  LL +   F
Sbjct: 178 ITIDTIEARLREVVDAEGIKVEDRALRYVAKTADGSMRDSLSLLDQCIAF 227


>gi|290474637|ref|YP_003467517.1| DNA polymerase III subunits tau/gamma; DNA elongation factor III
           [Xenorhabdus bovienii SS-2004]
 gi|289173950|emb|CBJ80737.1| DNA polymerase III, tau and gamma subunits; DNA elongation factor
           III [Xenorhabdus bovienii SS-2004]
          Length = 658

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 53/252 (21%), Positives = 89/252 (35%), Gaps = 31/252 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+   +  GQ    + L     A     + L H  LF G  G+GKTT+A+++A+ L   
Sbjct: 11  RPQIFSDVIGQQHVLTAL-----ANGLEHQRLHHAYLFSGTRGVGKTTIARLLAKGLNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILY------PAMEDFQ 133
              T  P     G  A  L   + R  D++ ID   R  +     L       PA   F+
Sbjct: 66  TGITKTP----CGQCANCLEIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFK 121

Query: 134 LDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           + L+               ++++        + ATT    L   +  R  +   L    +
Sbjct: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALNV 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           + +   ++       +     A   +A  + G+ R A  L     D A       +T +I
Sbjct: 181 DQISGQLEHVLNAEQIESDSRARHLLARAADGSMRDALSL----TDQAIALGGGKLTADI 236

Query: 246 ADAALLRLAIDK 257
               L  L  D+
Sbjct: 237 VSQMLGTLDNDQ 248


>gi|229845044|ref|ZP_04465180.1| DNA polymerase III subunits gamma and tau [Haemophilus influenzae
           6P18H1]
 gi|229812016|gb|EEP47709.1| DNA polymerase III subunits gamma and tau [Haemophilus influenzae
           6P18H1]
          Length = 688

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 52/282 (18%), Positives = 88/282 (31%), Gaps = 65/282 (23%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T  +  GQ    + L     A   +   L H  LF G  G+GKT++A++ A+ L   
Sbjct: 11  RPKTFADVVGQEHIITAL-----ANGLKDNRLHHAYLFSGTRGVGKTSIARLFAKGLNCV 65

Query: 82  F------------------------RSTSGPVIAKAGDLAALLTNLEDRDVL------FI 111
                                             K  D   LL N++ + V+       I
Sbjct: 66  HGVTATPCGECENCKAIEQGNFIDLIEIDAASRTKVEDTRELLDNVQYKPVVGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSRHSFNALLKTLEE------------------PPEYVKFLLATTDPQKLPVTIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L   +   +   +        +   D A  ++A  ++G+ R +  L     D
Sbjct: 168 SRC-LQFHLKALDETQISQHLAHILTQENIPFEDPALVKLAKAAQGSIRDSLSL----TD 222

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIAR 273
            A     + +T  +    L  L       D   +  L  + +
Sbjct: 223 QAIAMGDRQVTNNVVSNMLGLLD------DNYSVDILYALHQ 258


>gi|11177922|ref|NP_064406.1| replication factor C subunit 2 [Mus musculus]
 gi|23813636|sp|Q9WUK4|RFC2_MOUSE RecName: Full=Replication factor C subunit 2; AltName:
           Full=Activator 1 40 kDa subunit; Short=A1 40 kDa
           subunit; AltName: Full=Activator 1 subunit 2; AltName:
           Full=Replication factor C 40 kDa subunit; Short=RF-C 40
           kDa subunit; Short=RFC40
 gi|4972952|gb|AAD34861.1|AF139987_4 replication factor C, 40kDa subunit [Mus musculus]
 gi|9800515|gb|AAF99332.1|AF289664_3 RFC2 [Mus musculus]
 gi|18606185|gb|AAH23028.1| Replication factor C (activator 1) 2 [Mus musculus]
 gi|26344918|dbj|BAC36108.1| unnamed protein product [Mus musculus]
 gi|68534875|gb|AAH99370.1| Replication factor C (activator 1) 2 [Mus musculus]
 gi|74185767|dbj|BAE32762.1| unnamed protein product [Mus musculus]
 gi|148687476|gb|EDL19423.1| replication factor C (activator 1) 2, isoform CRA_a [Mus musculus]
          Length = 349

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 77/227 (33%), Gaps = 38/227 (16%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   +   RP  L E  G  +  S L+VF     AR   + +++  GPPG GKTT    +
Sbjct: 30  ELPWVEKYRPLKLNEIVGNEDTVSRLEVF-----AREGNVPNIIIAGPPGTGKTTSILCL 84

Query: 75  AR------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIHRLSII 120
           AR            EL  +       V  K    A     L      ++ +DE   ++  
Sbjct: 85  ARALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDG 144

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            ++ L   ME +                   +RF    A      +  P+Q R  +    
Sbjct: 145 AQQALRRTMEIYSKT----------------TRF--ALACNASDKIIEPIQSRCAVLRYT 186

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
              + + L   +    +   +  TD+    I   ++G  R A   L+
Sbjct: 187 KLTDAQVLTR-LMNVIEKEKVPYTDDGLEAIIFTAQGDMRQALNNLQ 232


>gi|330507066|ref|YP_004383494.1| AAA ATPase family protein [Methanosaeta concilii GP-6]
 gi|328927874|gb|AEB67676.1| AAA ATPase family protein associated with various cellular
           activities [Methanosaeta concilii GP-6]
          Length = 366

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 51/248 (20%), Positives = 102/248 (41%), Gaps = 21/248 (8%)

Query: 26  TLEEFTGQVEACSNLKV----FIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           + +E  GQ EA   +K+      +  +    A  ++LF G  G GKT +A+ ++ + GV 
Sbjct: 117 SFDEVVGQEEAKRKVKIVEKYLSDPERFGRWAPRNILFYGVSGTGKTMIAKALSAKAGVP 176

Query: 82  FRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEIHR--LSIIVEEILYPAMED 131
             +     +     G+ A  + +L ++       ++FIDE+    L    +++     E 
Sbjct: 177 MLAVKSTSLIGEFVGEGARQIHSLYEKAEEMAPCIIFIDELDAIALDRRYQDLRGDVSEM 236

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
               L   +G S+R           IAAT ++ +L + ++ RF   I     + ++   I
Sbjct: 237 VNSLLTEMDGISSRLG------ICTIAATNQIEVLDSSIRSRFEEEIEFKLPDKDERLQI 290

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSR-GTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           +++ A    L + D    EIA ++   + R     + +V     +     I+++  + AL
Sbjct: 291 LEKNASTLPLEMVDVDLKEIARQTDGFSGRDLVEKVLKVALHHALMDECNISQKHIEEAL 350

Query: 251 LRLAIDKM 258
            R      
Sbjct: 351 PRARKHYR 358


>gi|294867359|ref|XP_002765080.1| replication factor C subunit, putative [Perkinsus marinus ATCC
           50983]
 gi|239864960|gb|EEQ97797.1| replication factor C subunit, putative [Perkinsus marinus ATCC
           50983]
          Length = 344

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 55/305 (18%), Positives = 98/305 (32%), Gaps = 54/305 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP +L +  G   A   L+     A A    + ++L  GPPG GKTT    +AR
Sbjct: 16  PWVEKYRPISLSDVVGNEPAMQRLR-----AMAEDRHMPNLLLSGPPGCGKTTSVMCLAR 70

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI--IVEEILYPAMEDFQL 134
            L       +  +   A D               ID +         ++I  PA    Q 
Sbjct: 71  ALLGEDLVKTAVLELNASDDRG------------IDVVRNRIKTFAQQKISLPAGGCQQK 118

Query: 135 DLMVGEG---------PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
            +++ E             R+++I+ +      A  +   +  P+Q R  I       + 
Sbjct: 119 IVILDEADSMTEAAQQAMRRTMEIHSATTRFALACNQSTKIIEPIQSRCAIVRFSRLKDS 178

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA-GRLLRRVRDFAEVAHAKTITR- 243
           + ++  V++ A +  + +  +    +   + G  R A   L      F  V         
Sbjct: 179 D-IEAQVKKVADMEEVQLRGDGLEALIFTAEGDMRAALNNLQSTATGFGIVTRENVFKVC 237

Query: 244 ------EIADAALLRLAID-KMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAI 296
                 E+  A L  +  D    FD+LD                 I      + +    +
Sbjct: 238 DQPQPGELKQATLDCVNNDWCSAFDRLDR----------------ITAQGYSIGDIVGTL 281

Query: 297 EDLIE 301
           E +I 
Sbjct: 282 ERVIR 286


>gi|149916416|ref|ZP_01904935.1| DNA polymerase III subunits gamma and tau [Roseobacter sp. AzwK-3b]
 gi|149809686|gb|EDM69540.1| DNA polymerase III subunits gamma and tau [Roseobacter sp. AzwK-3b]
          Length = 596

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 63/300 (21%), Positives = 107/300 (35%), Gaps = 31/300 (10%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T  +  GQ      LK   +A +         +  G  G GKTT A+++A+ +
Sbjct: 13  ARKYRPETFADLVGQDAMVRTLKNAFKADRIAQA----FIMTGIRGTGKTTTARIIAKGM 68

Query: 79  GV-NFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSI-----IVEEILYPAME 130
                    GP     G        +E R  DVL +D   R  +     I++ + Y A  
Sbjct: 69  NCIGPDGQGGPTTEPCGQCEHCTAIMEGRHVDVLEMDAASRTGVGDVREIIDSVHYRAAS 128

Query: 131 DFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
                 ++ E             ++++   +    I ATT +  +   +  R      L 
Sbjct: 129 ARYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLSRCQ-RFDLR 187

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
             E E +  +++R A   G  +TD+A   I   + G+ R A  LL    D A    A   
Sbjct: 188 RIEPEVMIALLRRIADAEGAQITDDALALITRAAEGSARDATSLL----DQAISHGAGET 243

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           +     + L      ++  D  DL    ++  +  G    +    A  ++P   + DL E
Sbjct: 244 SAAEVRSMLGLADRGRV-LDLFDL----IMKGDAAGALTELGGQYAEGADPMAVLRDLAE 298


>gi|239830865|ref|ZP_04679194.1| DNA polymerase III, subunits gamma and tau [Ochrobactrum
           intermedium LMG 3301]
 gi|239823132|gb|EEQ94700.1| DNA polymerase III, subunits gamma and tau [Ochrobactrum
           intermedium LMG 3301]
          Length = 635

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 53/266 (19%), Positives = 93/266 (34%), Gaps = 25/266 (9%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           +MD +                 RP+   +  GQ      LK   E  +         +  
Sbjct: 25  LMDTKSAGFAADGAYRVLARKYRPQNFNDLIGQEPMVRTLKNAFETGRIAQAW----MLT 80

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLAALLTNLEDRDVLFID-----E 113
           G  G+GKTT A+++AR L     +   P I  +  G+    +      DV+ +D      
Sbjct: 81  GVRGVGKTTTARILARALNYKTDTVDQPTIDLSVPGENCQAIMEGRHVDVIEMDAASHTG 140

Query: 114 IHRLSIIVEEILYPAMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVG 164
           I  +  I+E++ Y  +       ++ E             ++++        I ATT + 
Sbjct: 141 IDDIREIIEQVRYRPVSARYKVYIIDEVHMLSTAAFNGLLKTLEEPPPHVKFIFATTEIR 200

Query: 165 LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGR 224
            +   +  R      L   E   L   ++R A+   +AV D +   IA    G+ R +  
Sbjct: 201 KVPITVLSRCQ-RFDLRRIESGTLAAHLRRIAEAEEIAVDDASLAMIARAGEGSARDSLS 259

Query: 225 LLRRVRDFAEVAHAKTITREIADAAL 250
           +     D A    A  +T E   + L
Sbjct: 260 IF----DQAIAHGAGAVTAEAVRSML 281


>gi|255714124|ref|XP_002553344.1| KLTH0D14586p [Lachancea thermotolerans]
 gi|238934724|emb|CAR22906.1| KLTH0D14586p [Lachancea thermotolerans]
          Length = 774

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 63/277 (22%), Positives = 104/277 (37%), Gaps = 35/277 (12%)

Query: 20  SLLR------PR-TLEEFTGQVEACSNLKVFIEA--------AKARAEALDHVLFVGPPG 64
           S +R      P+    +  GQ +    +K  I+         ++    A   VL  GPPG
Sbjct: 494 SAMREIFLEMPKVYWSDIGGQEDLKLKMKEMIQLPLEAPESFSRLSVSAPKGVLLYGPPG 553

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DVLFIDEIHR 116
             KT  A+ +A E GVNF +  GP I     G+    +  +  +       ++F DEI  
Sbjct: 554 CSKTLTAKALATESGVNFLAVKGPEIFNKYVGESERAIREVFRKARAAAPSIIFFDEIDA 613

Query: 117 LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RF 174
           LS   +     +  +  L  ++ E          L+   ++AAT R   +   L    R 
Sbjct: 614 LSPDRDSGGSTSAANHVLTSLLNEIDGVE----ELNGVVIVAATNRPDEIDAALLRPGRL 669

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
              I +   + E    I+++  K   L  +D    E A ++ G       LL +    A 
Sbjct: 670 DRHIYVGPPDFEARLQILRKSTKDFHLIDSDALLQEFAQKTEGCSGAEVVLLCQEAGLAA 729

Query: 235 VA---HAKTITREIADAALLRLAIDKMGFDQLDLRYL 268
           +     A+ + R+  D A+   A    G D+  L Y 
Sbjct: 730 IMENLDAEKVDRKHFDKAI---AGISRGIDKEMLEYY 763



 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 47/250 (18%), Positives = 80/250 (32%), Gaps = 34/250 (13%)

Query: 32  GQVEACSNLKVFIEA--------AKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFR 83
           G  +    LK  IE         A         +L  GPPG GKT L + VA E   +  
Sbjct: 244 GLQKEIELLKRTIELPLHQPTLFADFGVTPPRGILLHGPPGTGKTMLLRCVASEANAHVL 303

Query: 84  STSGPVI------AKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           + +GP I           L  +          ++FIDEI  L+          +E   + 
Sbjct: 304 TINGPSIVSKYLGETEAALRDIFNEARIYQPSIIFIDEIDSLAPSRTSDDSGEVESRVVA 363

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQ 193
            ++           +  R  ++AAT R   +   L+   R    + +   ++E    I+ 
Sbjct: 364 TLLTL----MDGMGSTGRVVVVAATNRPNAVDMALRRPGRLDQEVEIGIPDVESRHDILL 419

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           +  +       +    +I   +  T    G  L  +             RE     L R 
Sbjct: 420 KQFRKVSEKRHELTLEDIQAIASKTHGYVGADLVAL------------CREAVMKTLQRG 467

Query: 254 AIDKMGFDQL 263
               +  D++
Sbjct: 468 VSHSLTKDEM 477


>gi|145634442|ref|ZP_01790152.1| DNA polymerase III subunits gamma and tau [Haemophilus influenzae
           PittAA]
 gi|145268422|gb|EDK08416.1| DNA polymerase III subunits gamma and tau [Haemophilus influenzae
           PittAA]
          Length = 688

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 52/282 (18%), Positives = 88/282 (31%), Gaps = 65/282 (23%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T  +  GQ    + L     A   +   L H  LF G  G+GKT++A++ A+ L   
Sbjct: 11  RPKTFADVVGQEHIITAL-----ANGLKDNRLHHAYLFSGTRGVGKTSIARLFAKGLNCV 65

Query: 82  F------------------------RSTSGPVIAKAGDLAALLTNLEDRDVL------FI 111
                                             K  D   LL N++ + V+       I
Sbjct: 66  HGVTATPCGECENCKAIEQGNFIDLIEIDAASRTKVEDTRELLDNVQYKPVVGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSRHSFNALLKTLEE------------------PPEYVKFLLATTDPQKLPVTIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L   +   +   +        +   D A  ++A  ++G+ R +  L     D
Sbjct: 168 SRC-LQFHLKALDETQISQHLAHILTQENIPFEDPALVKLAKAAQGSIRDSLSL----TD 222

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIAR 273
            A     + +T  +    L  L       D   +  L  + +
Sbjct: 223 QAIAMGDRQVTNNVVSNMLGLLD------DNYSVDILYALHQ 258


>gi|57642153|ref|YP_184631.1| replication factor C small subunit [Thermococcus kodakarensis KOD1]
 gi|62287362|sp|Q5JHP2|RFCS_PYRKO RecName: Full=Replication factor C small subunit; Short=RFC small
           subunit; AltName: Full=Clamp loader small subunit;
           Contains: RecName: Full=Pko RFC intein
 gi|57160477|dbj|BAD86407.1| replication factor C, small subunit [Thermococcus kodakarensis
           KOD1]
          Length = 866

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 59/140 (42%), Gaps = 15/140 (10%)

Query: 8   LSRNVSQ----EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           +S  V +    E   +   RP+ LE+  GQ      LK +++       ++ H+LF GPP
Sbjct: 1   MSEEVKEVKILEKPWVEKYRPQRLEDIVGQDHIVKRLKHYVKTG-----SMPHLLFAGPP 55

Query: 64  GLGK--TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           G+GK  T  A+V+A           G ++ K        T +E   VL IDE  +L    
Sbjct: 56  GVGKCLTGDAKVIAN----GRLFELGELVEKVSKGRFGPTPVEGLKVLGIDEDGKLREFE 111

Query: 122 EEILYPAMEDFQLDLMVGEG 141
            + +Y    +  + +    G
Sbjct: 112 VQYVYKDRAERLIKVRTRLG 131



 Score = 38.9 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 59/182 (32%), Gaps = 32/182 (17%)

Query: 62  PPGLGKTTLAQVVARE-----LGVNFRSTSGPVIAKAGDLAALLTNLED--------RDV 108
           P  +  TT A  +ARE        NF   +         +   +               +
Sbjct: 594 PTVVHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKI 653

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +F+DE   L+   ++ L   ME F                   +    I +      +  
Sbjct: 654 IFLDEADALTQDAQQALRRTMEMFS------------------NNVRFILSCNYSSKIIE 695

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
           P+Q R  I  R      ED+   ++  A+  GL +T+E    I   + G  R A  +L+ 
Sbjct: 696 PIQSRCAI-FRFRPLRDEDIAKRIRYIAENEGLELTEEGLQAILYVAEGDLRRAINVLQA 754

Query: 229 VR 230
             
Sbjct: 755 AA 756


>gi|302390827|ref|YP_003826647.1| DNA polymerase III subunits gamma/tau [Acetohalobium arabaticum DSM
           5501]
 gi|302202904|gb|ADL11582.1| DNA polymerase III, subunits gamma and tau [Acetohalobium
           arabaticum DSM 5501]
          Length = 586

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 86/225 (38%), Gaps = 21/225 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ      L+  I+  +         LF GP G GKT+ A+V ++ L  N 
Sbjct: 11  RPQTFSDIVGQQNVIQTLENAIKFDRIAHAY----LFCGPRGTGKTSTAKVFSKALNCND 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
             T  P  ++      +  N    DV+ ID      I  +  + E++ +   E      +
Sbjct: 67  GPTVTP-CSECKSCQKIEDNSSI-DVIEIDAASNRGIDEIRELREKVKFFPTEGNYKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT    L   +  R       +   I++L
Sbjct: 125 IDEAHMLTKEAFNALLKTLEEPPEYVIFILATTEPHSLLPTILSRCQ-RFDFSRLSIQNL 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
              +   ++   + +T EAA  IA  + G  R    LL ++  ++
Sbjct: 184 VQRLNFISQQEEIDLTAEAALAIARSAEGGMRDGISLLDQIISYS 228


>gi|206890696|ref|YP_002248894.1| DNA polymerase III subunit gamma/tau [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206742634|gb|ACI21691.1| DNA polymerase III subunit gamma/tau [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 512

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 50/231 (21%), Positives = 85/231 (36%), Gaps = 24/231 (10%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARE 77
               RP+   + TGQ      L+  ++  K     + H  +F GP G+GKT+ A+++A+ 
Sbjct: 7   ARKYRPQKFSDLTGQDVVIKILQNSLQTGK-----ISHAYVFSGPKGVGKTSTARILAKA 61

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII-----VEEILYPAMEDF 132
             +N   +      K     A+        V+ ID     S+       E I Y + E F
Sbjct: 62  --LNCIDSQNKPCDKCPSCVAI-KEGRAMSVIEIDAASHTSVENIRDLRENIRYASAEGF 118

Query: 133 QLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
               ++ E             ++++        + ATT    +   +  R          
Sbjct: 119 YKVYIIDEAHMLSQSAFNAFLKTLEEPPPHVVFVLATTEPRKIPLTVLSRCQHLQFKRI- 177

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
            I  +K  +Q       +  T+EA   IA  S G+ R A  +L +V  F E
Sbjct: 178 PINLIKQRLQFICNQENINATEEALYTIASNSEGSMRDALTMLDQVTSFTE 228


>gi|156100055|ref|XP_001615755.1| replication factor C3 [Plasmodium vivax SaI-1]
 gi|148804629|gb|EDL46028.1| replication factor C3, putative [Plasmodium vivax]
          Length = 344

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 77/224 (34%), Gaps = 29/224 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP  L +     +  S ++ F+E  +     L H+L  GPPG GKT+    V +
Sbjct: 14  PWVEKYRPNVLNDIISHEQVISTIQKFVEKGE-----LPHLLLHGPPGTGKTSTILAVCK 68

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFI-DEIHRLSIIVEEILYPAMEDFQLD 135
           E  +   S S  V+         L   +DR +  + D+I   +       Y   E   L 
Sbjct: 69  E--LYGESRSSFVLE--------LNASDDRGISVVRDQIKTFAESKNH--YNTCEKTTLK 116

Query: 136 LMV----------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           L++           +    R ++              V  +T  +Q R     R +  + 
Sbjct: 117 LIILDEADHMTYPAQNAMRRIMENYAKNVRFCLLCNYVNKITPAIQSRC-TSFRFSPLKK 175

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           E +       AK   + +T +    +    RG  R     L+ V
Sbjct: 176 EYMVNKALDIAKSENVDLTQDGLESLIRVGRGDMRRILNCLQVV 219


>gi|146328966|ref|YP_001209844.1| DNA polymerase III, subunits gamma and tau [Dichelobacter nodosus
           VCS1703A]
 gi|146232436|gb|ABQ13414.1| DNA polymerase III, subunits gamma and tau [Dichelobacter nodosus
           VCS1703A]
          Length = 665

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 46/244 (18%), Positives = 76/244 (31%), Gaps = 56/244 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGV- 80
           RP+T  E  GQ      L   ++      + L H  LF G  G+GKT+LA++ A+ L   
Sbjct: 10  RPKTFRELVGQQHITQALSYALD-----HDRLHHAYLFTGTRGVGKTSLARIYAKSLNCL 64

Query: 81  ------------------------NFRSTSGPVIAKAGDLAALLTNL------EDRDVLF 110
                                   +             +   LL NL          V  
Sbjct: 65  INGTSAQPCGQCEHCLEIDQGRFPDLIEVDAASRRGIDETKELLDNLPYAPVKGRYKVYL 124

Query: 111 IDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           IDE+H  +      L   +E+                         I ATT +  +   +
Sbjct: 125 IDEVHMFTRESFNALLKTLEE------------------PPPHVKFILATTDIQKVPTTV 166

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
             R  +   L     E L+  +    ++  +    EA   +A  +RG+ R     L +  
Sbjct: 167 LSRC-LQFHLKNINPEQLRQHLAHILQVERIDYEAEALVLLAQAARGSMRDGLSFLDQAI 225

Query: 231 DFAE 234
            + +
Sbjct: 226 AYGQ 229


>gi|229825861|ref|ZP_04451930.1| hypothetical protein GCWU000182_01225 [Abiotrophia defectiva ATCC
           49176]
 gi|229789881|gb|EEP25995.1| hypothetical protein GCWU000182_01225 [Abiotrophia defectiva ATCC
           49176]
          Length = 522

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 84/232 (36%), Gaps = 23/232 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     RP+  +E  GQ    + LK  I+      E + H  +F G  G GKT++A++ A
Sbjct: 5   ALYRKFRPKGFDEVKGQDSVVTVLKNQIK-----HEKIGHAYMFSGTRGTGKTSVAKIFA 59

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAME 130
           + +         P      +    +      DV+ ID      +  +  ++EE+ Y   +
Sbjct: 60  KAVNCENTKDGSP--CGVCETCKKIGEGRTLDVIEIDAATNNGVDNMREVIEEVKYSPTD 117

Query: 131 DFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
                 ++ E             ++++        I ATT    +   ++ R        
Sbjct: 118 TKYKVYIIDEVHMLSSGAFNALLKTLEEPPEYAIFILATTEPHKVLPTIKSRCQKYDFRR 177

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
              IE +   ++      G    +EA   IA +  G+ R A  LL +   F+
Sbjct: 178 I-SIETISDRLKELMDKEGNTYEEEALKFIARKGDGSMRDALSLLDQCLAFS 228


>gi|212704319|ref|ZP_03312447.1| hypothetical protein DESPIG_02374 [Desulfovibrio piger ATCC 29098]
 gi|212672281|gb|EEB32764.1| hypothetical protein DESPIG_02374 [Desulfovibrio piger ATCC 29098]
          Length = 670

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 54/254 (21%), Positives = 87/254 (34%), Gaps = 21/254 (8%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           +  +  RP+T  +  GQ    + L      A A        L  G  G+GKTT+A++ A+
Sbjct: 5   SLAAKYRPQTFAQVAGQDMVKAVLSR----AAAEDRVAAAYLLSGTRGVGKTTIARIFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL-----YPAMED 131
              +N R   GP      D    +T     DV  ID     S+     L     Y  ME 
Sbjct: 61  A--LNCRHAPGPEPCNQCDQCRKITQGSHVDVTEIDGASNNSVEDARALRENIGYAPMEG 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++   +R   I ATT        +  R         
Sbjct: 119 RYKVFIIDEAHMLSRSAFNALLKTLEEPPARVVFIFATTEAHKFPITIVSRCQ-HFVFRH 177

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
              + L   + +      +   + A   IA R+ G+ R +  LL +            +T
Sbjct: 178 LGEDALVQHLSQVLNKENVPFEEGAVRLIARRAAGSVRDSMSLLDQTLALGGDNLTSAVT 237

Query: 243 REIADAALLRLAID 256
           RE+   A   L+ D
Sbjct: 238 REVLGLAGQELSAD 251


>gi|325264933|ref|ZP_08131661.1| DNA polymerase III, gamma and tau subunits [Clostridium sp. D5]
 gi|324029922|gb|EGB91209.1| DNA polymerase III, gamma and tau subunits [Clostridium sp. D5]
          Length = 524

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 80/230 (34%), Gaps = 21/230 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP    +  GQ    + L+  I+A +         LF G  G GKTT+A++ A+
Sbjct: 5   ALYRKFRPTEFADVKGQDHIITTLQNQIKANRIGHAY----LFCGTRGTGKTTVAKIFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +     +   P   +     ++        V+ ID      +  +  I EE+ Y   E 
Sbjct: 61  AVNCEHPADGSP-CGECAMCRSIAAGTSMN-VIEIDAASNNGVDNIREIREEVAYRPTEG 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT V  +   +  R         
Sbjct: 119 RYKVYIIDEVHMLSIGAFNALLKTLEEPPEYVIFILATTEVHKIPITILSRCQHYDFKRI 178

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
             IE +   ++       + V D A   +A  + G+ R A  LL +   F
Sbjct: 179 -TIETISDRLKELMVTEQVEVEDRAIRYVAKAADGSMRDALSLLDQCIAF 227


>gi|294650252|ref|ZP_06727622.1| DNA polymerase III, tau and gamma subunits [Acinetobacter
           haemolyticus ATCC 19194]
 gi|292823856|gb|EFF82689.1| DNA polymerase III, tau and gamma subunits [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 682

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 78/248 (31%), Gaps = 53/248 (21%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RPR   E  GQ          + +A  R       LF G  G+GKTT+A+++A+ L
Sbjct: 6   ARKYRPRNFNELVGQNHV----SRALTSALERGRLHHAYLFTGTRGVGKTTIARILAKCL 61

Query: 79  GVNFRSTS------------------------GPVIAKAGDLAALLTNL------EDRDV 108
                 TS                             K  D   LL N+          V
Sbjct: 62  NCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKV 121

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
             IDE+H LS      L   +E+                         + ATT    L  
Sbjct: 122 YLIDEVHMLSTHSFNALLKTLEE------------------PPEHVKFLFATTDPQKLPI 163

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            +  R  +   L    ++++   +        +    +A  +IA  ++G+ R A  L  +
Sbjct: 164 TVVSRC-LQFTLRPLAVDEITEHLTAILVKEHIDADQDAIWQIAESAQGSLRDALSLTDQ 222

Query: 229 VRDFAEVA 236
              + + A
Sbjct: 223 AIAYGQGA 230


>gi|302421348|ref|XP_003008504.1| replication factor C subunit 4 [Verticillium albo-atrum VaMs.102]
 gi|261351650|gb|EEY14078.1| replication factor C subunit 4 [Verticillium albo-atrum VaMs.102]
          Length = 361

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 78/227 (34%), Gaps = 38/227 (16%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   +   RP  L++  G  E    LK+      A+   + HV+  G PG+GKTT    +
Sbjct: 36  ELPWVEKYRPVFLDDVVGNTETIERLKII-----AKEGNMPHVIISGMPGIGKTTSVLCL 90

Query: 75  ARE-----LGVNFRSTSGPVIAKAGDLAALLTNLEDRDV---------LFIDEIHRLSII 120
           AR+             +         +   +     + V         + +DE   ++  
Sbjct: 91  ARQLLGESYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPQGRHKLVILDEADSMTSG 150

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            ++ L   ME +                 N +RF    A  +   +  PLQ R  I    
Sbjct: 151 AQQALRRTMEIYS----------------NTTRFAF--ACNQSNKIIEPLQSRCAILRYG 192

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
              + + +K ++Q   +   +  +D+    +   + G  R A   L+
Sbjct: 193 RLTDAQVVKRLMQ-IIEAESVQYSDDGLAALVFSAEGDMRQAINNLQ 238


>gi|239942529|ref|ZP_04694466.1| DNA polymerase III subunits gamma and tau [Streptomyces roseosporus
           NRRL 15998]
 gi|291445990|ref|ZP_06585380.1| DNA polymerase III subunits gamma and tau [Streptomyces roseosporus
           NRRL 15998]
 gi|291348937|gb|EFE75841.1| DNA polymerase III subunits gamma and tau [Streptomyces roseosporus
           NRRL 15998]
          Length = 399

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 59/175 (33%), Gaps = 26/175 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP +  E  GQ      L+  +   +         LF GP G GKTT A+++AR
Sbjct: 5   ALYRRYRPESFAEVIGQEHVTDPLQQALRNNRVNHAY----LFSGPRGCGKTTSARILAR 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR----DVLFIDEIHRLSII------VEEILY 126
            L        GP     G+  +      +     DV+ ID      +        +    
Sbjct: 61  CLNCE----QGPTPTPCGECQSCRDLARNGPGSIDVIEIDAASHGGVDDARDLREKAFFG 116

Query: 127 PAMEDFQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           PA   +++ ++         G     + V+        I ATT    +   ++ R
Sbjct: 117 PASSRYKIYIIDEAHMVTPAGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSR 171


>gi|304390521|ref|ZP_07372474.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|304326277|gb|EFL93522.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
          Length = 798

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 46/161 (28%), Gaps = 39/161 (24%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T E+  GQ      L    +AA A        LF GP G GKTT A+++AR
Sbjct: 4   ALYRRYRPDTFEDVIGQEHVTKAL----QAALANGRVNHAYLFSGPRGCGKTTSARILAR 59

Query: 77  ELGV--------------------------NFRSTSGPVIAKAGDLAALLTNL------E 104
            L                            +             D   L          +
Sbjct: 60  CLNCAQGPTATPCGTCDSCRDLATGGSGSLDVIEIDAASHGGVDDTRELRDRAAYAPARD 119

Query: 105 DRDVLFIDEIHRLSIIVEEILYPAME---DFQLDLMVGEGP 142
              +  IDE H +S      L   +E   D    +     P
Sbjct: 120 RFKIFIIDEAHNVSKEGFNALLKLVEEPPDHIKFIFATTNP 160


>gi|195473665|ref|XP_002089113.1| GE18941 [Drosophila yakuba]
 gi|194175214|gb|EDW88825.1| GE18941 [Drosophila yakuba]
          Length = 332

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 72/239 (30%), Gaps = 39/239 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP  L++     E  S +  FI       + L H+LF GPPG GKT+     AR
Sbjct: 12  PWVEKYRPSGLDDLISHEEIISTITRFIS-----RKQLPHLLFYGPPGTGKTSTILACAR 66

Query: 77  ------ELGVNFRSTSGPVIAKAGDLA-ALLTNLEDRDVLF-------IDEIHRLSIIVE 122
                 +        +       G +   +L     R +         +DE   ++   +
Sbjct: 67  QLYSPQQFKSMVLELNASDDRGIGIVRGQILNFASTRTIFCDTFKLIILDEADAMTNDAQ 126

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             L   +E +                              +  +   LQ R     R   
Sbjct: 127 NALRRIIEKYT------------------DNVRFCVICNYLSKIIPALQSRC-TRFRFAP 167

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR-RVRDFAEVAHAKT 240
                +   +++  +   + +TD+    +   ++G  R    +L+  V  F  V     
Sbjct: 168 LSQNQMMPRLEKIIEAEAVQITDDGKRALLTLAKGDMRKVLNVLQSTVMAFDTVNEDNV 226


>gi|288561110|ref|YP_003424596.1| ATPase [Methanobrevibacter ruminantium M1]
 gi|288543820|gb|ADC47704.1| ATPase [Methanobrevibacter ruminantium M1]
          Length = 375

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 49/245 (20%), Positives = 87/245 (35%), Gaps = 17/245 (6%)

Query: 27  LEEFTGQVEACSNLKVFIE----AAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
            ++  GQ  A S  K+  +      K    A  +VLF G PG GKT LA+ +A EL +  
Sbjct: 128 FDDIVGQENAKSKSKLIYKYLQNPDKFGTWAPKNVLFYGAPGTGKTMLAKALANELDIRL 187

Query: 83  RSTSGPVI--AKAGDLAALLTNLED------RDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
                  +     GD A+ +  L +        ++FIDEI  +++              +
Sbjct: 188 YLVKSTSLIGEHVGDAASRIHELFEAASRNAPSLIFIDEIDAIALHRSFQSL----RGDV 243

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
             +V    +             IAAT     +   ++ RF   I       ++ + I+  
Sbjct: 244 AEIVNSLLTEMDGISPNDGVVTIAATNNPSAIDFAIRSRFEEEIEFKLPSDDERREIIML 303

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPR-IAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
                 L    +    + +  R + R I  +LL+     A +   +T+  +    AL   
Sbjct: 304 NLDTFPLDYDLDIEKLVKVSKRMSGRDIKEKLLKTALHNAIINDKQTVDMDDVAFALGVN 363

Query: 254 AIDKM 258
              + 
Sbjct: 364 KYKEE 368


>gi|218132674|ref|ZP_03461478.1| hypothetical protein BACPEC_00534 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992400|gb|EEC58403.1| hypothetical protein BACPEC_00534 [Bacteroides pectinophilus ATCC
           43243]
          Length = 540

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 83/226 (36%), Gaps = 25/226 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP   ++  GQ    + L+  I+A +         LF G  G GKTT+A++ A+ +    
Sbjct: 11  RPADFDDVKGQDAIVTTLRNQIKADRIGHAY----LFCGTRGTGKTTVAKIFAKAVNCEH 66

Query: 83  RSTSGPVIAKAGDLA--ALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLD 135
                P     G+ A    +      +V+ ID      +  +  I EE+ Y   E     
Sbjct: 67  PVDGRP----CGECAMCKSIAAGSSMNVIEIDAASNNGVEDIRKIREEVQYSPTEGRYKV 122

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             ++++   S    I ATT    +   +  R           IE
Sbjct: 123 YIIDEVHMLSIGAFNALLKTLEEPPSYVIFILATTETHKIPITILSRCQRYDFKRI-SIE 181

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
            +   ++   K   + V D+A   IA  + G+ R A  LL +   F
Sbjct: 182 TITARLEELMKAENINVEDKALRYIAKAADGSLRDALSLLDQCLAF 227


>gi|254438399|ref|ZP_05051893.1| DNA polymerase III, subunits gamma and tau, putative
           [Octadecabacter antarcticus 307]
 gi|198253845|gb|EDY78159.1| DNA polymerase III, subunits gamma and tau, putative
           [Octadecabacter antarcticus 307]
          Length = 590

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 56/261 (21%), Positives = 91/261 (34%), Gaps = 26/261 (9%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           +   +  +        RP T  +  GQ      LK    A +         +  G  G G
Sbjct: 1   MTESDSPKYQVLARKYRPETFADLVGQDAMVRTLKNAFAADRIAQA----FIMTGIRGTG 56

Query: 67  KTTLAQVVARELGVNFRSTS-GPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSI---- 119
           KTT A+++A+ +         GP     G        +E R  DV+ +D   R  +    
Sbjct: 57  KTTTARIIAKGMNCIGIDGQGGPTTEPCGTCENCAAIMEGRHVDVMEMDAASRTGVGDIR 116

Query: 120 -IVEEILYPAMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNP 169
            I+E + Y A        ++ E             ++++        I ATT +  +   
Sbjct: 117 EIIESVHYRAASARYKVYIIDEVHMLSVNAFNALLKTLEEPPEHVKFIFATTEIRKVPVT 176

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           +  R      L   E ED   ++++ AK     +TD+A   I   + G+ R A  LL   
Sbjct: 177 VLSRCQ-RFDLRRIEPEDQIGLLRKIAKAEKAEITDDALALITRAAEGSARDAQSLL--- 232

Query: 230 RDFAEVAHAKTITREIADAAL 250
            D A    A   T +   A L
Sbjct: 233 -DQAISHGAGETTADQVRAML 252


>gi|328768110|gb|EGF78157.1| hypothetical protein BATDEDRAFT_13267 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 611

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 63/275 (22%), Positives = 96/275 (34%), Gaps = 40/275 (14%)

Query: 24  PRT-LEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVV 74
           P+  L +  G  +    L   +       E   H        +L  GPPG GKT LA+ +
Sbjct: 14  PKNRLSDLGGIEQIVQELNHLVCMPLGHPEIYRHLGVDLPRGILLHGPPGCGKTMLARAI 73

Query: 75  ARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIV---EE 123
           A E GV F S + PVI           +  +    +     +LFIDEI  ++      + 
Sbjct: 74  AGEAGVPFISIAAPVIVSGMSGESEKKIREVFEEAKSLAPCILFIDEIDAITPKRETAQR 133

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINL-------SRFTLIAATTRVGLLTNPLQD--RF 174
            +   +    L  M    P   S   +L           +I AT R   +   L+   RF
Sbjct: 134 EMERRIVAQLLTSMDSLSPQDTSFDGSLDVQTDDYKHVMIIGATNRPDSIDPALRRAGRF 193

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
              I +   +      I+Q+ AK   L        +    +R TP   G  L  +     
Sbjct: 194 DREICMAVPDENARMHILQKLAKKMRLD----GGFDFRDLARKTPGYVGADLNSL----- 244

Query: 235 VAHAKTITREIADAALLRLAIDKMGFDQLDLRYLT 269
            A A  I  +    +L     D+   DQ+D+   T
Sbjct: 245 TAEAGMIAIDRIINSLSYKLHDQS--DQMDITMNT 277



 Score = 45.5 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 45/122 (36%), Gaps = 12/122 (9%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--------AKAGDLAALLTNLEDRDV 108
           VL  GPPG GKT LA+ VA E   NF S  GP +         +A              V
Sbjct: 376 VLLYGPPGCGKTLLAKAVANESHCNFISIKGPELLNKYVGESERAVRTVFARAQASSPCV 435

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +F DE+  L                ++ ++ E            +  +IAAT R  ++  
Sbjct: 436 IFFDELDALCPSRSNDAESQSASRLVNTLLTE----MDGMQGRKQVFVIAATNRPDMIDP 491

Query: 169 PL 170
            +
Sbjct: 492 AM 493


>gi|299116091|emb|CBN74507.1| Yme1 homolog, mitochondrial inner membrane i-AAA protease
           [Ectocarpus siliculosus]
          Length = 748

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 56/247 (22%), Positives = 94/247 (38%), Gaps = 32/247 (12%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +T ++  G  EA S L+  +   K          +    ++  GPPG GKT LA+ +A E
Sbjct: 277 KTFDDVVGVDEAKSELEEIVMYLKNPQMFTRLGGKLPRGLMLTGPPGTGKTLLARAIAGE 336

Query: 78  LGVNFRSTSGPVIA------KAGDLAALLTNLEDRD--VLFIDEIHRLSIIVE---EILY 126
            GV F  +SG           A  +  L    +     ++FIDEI  +    +       
Sbjct: 337 AGVPFYYSSGSEFEEMFVGVGAKRVRELFAAAKKTAPCIIFIDEIDAIGSSRQLRDSSAL 396

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRF--TLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
               +  L  M G   ++  + I  + F  TL  A TR G        RF   + +   +
Sbjct: 397 KMTLNQLLVEMDGFDQNSNIIVIAATNFPQTLDHALTRPG--------RFDKHVAVPLPD 448

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +   + I+     L       ++A  +   ++GTP  +G  L  + + A V  +    + 
Sbjct: 449 VRGREQIL----GLYTSRTILDSAANLKALAQGTPGFSGADLSNLVNQAAVKASLDGAKA 504

Query: 245 IADAALL 251
           I   AL 
Sbjct: 505 ITTEALE 511


>gi|298244237|ref|ZP_06968043.1| DNA polymerase III, subunits gamma and tau [Ktedonobacter racemifer
           DSM 44963]
 gi|297551718|gb|EFH85583.1| DNA polymerase III, subunits gamma and tau [Ktedonobacter racemifer
           DSM 44963]
          Length = 762

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 85/226 (37%), Gaps = 23/226 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           R +T  E  GQ      L+  +++       L H  LF GP G GKTT A+++A+ +   
Sbjct: 11  RSQTFSEVVGQEAVIQTLRNALKSG-----TLAHAYLFTGPRGTGKTTTARLLAKTINCL 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDL 136
               +G    +      + T     +V+ ID      I  +  + E+++ P         
Sbjct: 66  NPH-NGEPCNECQQCREI-TAGNSFNVIEIDAASNRGIDSIRELREKVMVPPTGGKYKVY 123

Query: 137 MVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ++ E             ++++        + ATT V  +   +  R        F  +  
Sbjct: 124 ILDEAHMLTVEAFNALLKTLEEPPPHAIFVMATTDVHKMLPTVLSRCQRYDFKRF-TMRQ 182

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
           L T + R A+   + +   AA  IA  + G  R A  LL +   +A
Sbjct: 183 LITHLSRVAQQEQVQLEGGAAELIARAAAGGMRDALSLLDQAIAYA 228


>gi|262279434|ref|ZP_06057219.1| DNA polymerase III [Acinetobacter calcoaceticus RUH2202]
 gi|262259785|gb|EEY78518.1| DNA polymerase III [Acinetobacter calcoaceticus RUH2202]
          Length = 689

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 82/257 (31%), Gaps = 53/257 (20%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RPR   E  GQ          + +A  R       LF G  G+GKTT+A+++A+ L
Sbjct: 6   ARKYRPRNFNELVGQNHV----SRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCL 61

Query: 79  GVNFRSTS------------------------GPVIAKAGDLAALLTNL------EDRDV 108
                 TS                             K  D   LL N+          V
Sbjct: 62  NCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKV 121

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
             IDE+H LS      L   +E+                         + ATT    L  
Sbjct: 122 YLIDEVHMLSTHSFNALLKTLEE------------------PPEHVKFLFATTDPQKLPI 163

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            +  R  +   L    ++++   +    +   +    +A  +IA  ++G+ R A  L  +
Sbjct: 164 TVISRC-LQFTLRPLAVDEITKHLGTILEKEQIVSDQDAIWQIAESAQGSLRDALSLTDQ 222

Query: 229 VRDFAEVAHAKTITREI 245
              + + A      +E+
Sbjct: 223 AIAYGQGAVQHQDVKEM 239


>gi|303319413|ref|XP_003069706.1| Activator 1 subunit 3 , putative [Coccidioides posadasii C735 delta
           SOWgp]
 gi|240109392|gb|EER27561.1| Activator 1 subunit 3 , putative [Coccidioides posadasii C735 delta
           SOWgp]
          Length = 398

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 65/189 (34%), Gaps = 32/189 (16%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
                   +   RP TL++ +G  +  + +  FIE+ +     L H+L  GPPG GKT+ 
Sbjct: 38  EAEDNLPWVEKYRPSTLDDVSGHQDIIATINRFIESNR-----LPHLLLYGPPGTGKTST 92

Query: 71  AQVVARE-------------------LGVNFRSTSGPVIAKAGDLAALL------TNLED 105
              +AR+                    G++         A    + ++       + L  
Sbjct: 93  ILALARQIYGVKNVRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMTPGGQAGSKLGA 152

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQLD--LMVGEGPSARSVKINLSRFTLIAATTRV 163
             ++ +DE   ++   +  L   ME +  +    +    + +     LSR T    +   
Sbjct: 153 FKLIILDEADAMTAAAQMALRRIMEKYTANTRFCIIANYTHKLTPALLSRCTRFRFSPLK 212

Query: 164 GLLTNPLQD 172
                 L D
Sbjct: 213 EQDIRVLVD 221


>gi|121533379|ref|ZP_01665207.1| DNA polymerase III, subunits gamma and tau [Thermosinus
           carboxydivorans Nor1]
 gi|121307938|gb|EAX48852.1| DNA polymerase III, subunits gamma and tau [Thermosinus
           carboxydivorans Nor1]
          Length = 351

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 53/244 (21%), Positives = 79/244 (32%), Gaps = 53/244 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV-- 80
           RP+  +   GQ    + LK  I A K         LF GP G GKT+ A+++A+ L    
Sbjct: 11  RPQDFDSLVGQDHVRTTLKNAIIAGKIAHAY----LFAGPRGTGKTSTAKILAKALNCLH 66

Query: 81  -------------------------NFRSTSGPVIAKAGDLAALLTNL---EDRDVLFID 112
                                       + S   I +  DL   +          V  ID
Sbjct: 67  GPTPNPCNHCPHCERINSGASMDVFEIDAASNRGIDEIRDLRETVKFAPVDGRYKVYIID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H L+      L   +E+          P A  V I         ATT    +   +  
Sbjct: 127 EVHMLTPEAFNALLKTLEE----------PPAHVVFIL--------ATTEPHKIPATIHS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R            E    + +  AK   L +T +A   IA+ + G  R A  +L +    
Sbjct: 169 RCQRYDFRRIGVKEIEGRLAEVAAK-NNLNITPDALKLIAVHADGGMRDALSILDQCTAL 227

Query: 233 AEVA 236
            + A
Sbjct: 228 DDTA 231


>gi|311694776|gb|ADP97649.1| DNA polymerase III subunits gamma and tau [marine bacterium HP15]
          Length = 650

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 81/227 (35%), Gaps = 27/227 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPRT E+  GQ      L   +E+ +     L H  LF G  G+GKTT+ +++AR L   
Sbjct: 11  RPRTFEDMVGQEHVLQALIHALESQR-----LHHAYLFTGTRGVGKTTIGRLLARCLNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEIL-----YPAMEDFQL 134
              T  P     G+ ++     E R  D++ ID   R  +     L     Y        
Sbjct: 66  TGVTPNP----CGECSSCQEIQEGRFVDLIEIDAASRTGVDDMRELTDNVQYAPTRGRYK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             ++ E             ++++        + ATT    L   +  R  +   L     
Sbjct: 122 VYLIDEVHMLTNQSFNAFLKTLEEPPEHVKFLLATTDPQKLPVTVLSRC-LQFNLKRMTP 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           E +   ++       +   + A   +A  + G+ R A  L  +   F
Sbjct: 181 EHIAGHLRHVLGAEEIPFEEPALWLLARAADGSMRDALSLTDQAIAF 227


>gi|195389432|ref|XP_002053381.1| GJ23369 [Drosophila virilis]
 gi|194151467|gb|EDW66901.1| GJ23369 [Drosophila virilis]
          Length = 356

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 52/316 (16%), Positives = 100/316 (31%), Gaps = 35/316 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RPR++++   Q E  + L+  +E A      L ++L  GPPG GKT+     AR
Sbjct: 34  PWVEKYRPRSVDDVVEQSEVVAVLRKCVEGAD-----LPNMLLYGPPGTGKTSTILAAAR 88

Query: 77  ------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD--------VLFIDEIHR 116
                       EL  +       V  K  + A L  +    D        ++ +DE   
Sbjct: 89  QIFGDMYRDRILELNASDERGINVVRTKIKNFAQLTASNVRPDGRSCPPFKIIVLDEADS 148

Query: 117 LSIIVEEILYPAM--EDFQLDLMVGEGPSARSVKINLSRFTLIAAT----TRVGLLTNPL 170
           ++   +  L   M  E       +     +R +    SR +         T++      +
Sbjct: 149 MTHAAQAALRRTMEKESRSTRFCLICNYVSRIIVPITSRCSKFRFKALGETQIIARLQHI 208

Query: 171 QDRFGIPIRLNFYEIEDLKT--IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            +  G+ I  + Y+     +   ++R           + A                    
Sbjct: 209 CELEGVRIDPDAYKSIVRISGGDMRRAITTLQSCYRLKGAEHTINTDDLLEMSGIIPEHY 268

Query: 229 VRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAG 288
           + D+ EV  +     E  +  +  +        Q+  +++  I R           I   
Sbjct: 269 LEDYLEVCRSG--NYERLEHFVREIGYSAYSVGQMMDQFVEFIVRCGSLTDKQKAIICDK 326

Query: 289 LSEPRDAIEDLIEPYM 304
           L E    ++D    Y+
Sbjct: 327 LGECCYRLQDGGSEYL 342


>gi|319787610|ref|YP_004147085.1| DNA polymerase III subunits gamma/tau [Pseudoxanthomonas suwonensis
           11-1]
 gi|317466122|gb|ADV27854.1| DNA polymerase III, subunits gamma and tau [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 673

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 53/310 (17%), Positives = 97/310 (31%), Gaps = 64/310 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+   E  GQ      L   ++  +         LF G  G+GKTT+A++ A+ L    
Sbjct: 11  RPKRFSELVGQEHVVRALGNALDTGRVHHA----FLFTGTRGVGKTTIARIFAKSLNCEK 66

Query: 83  ------------------------RSTSGPVIAKAGDLAALLTNLE------DRDVLFID 112
                                               D+  ++ N +         V  ID
Sbjct: 67  GTSAEPCGQCAACMDIDAGRYIDLLEIDAASNTGVDDVREVIENAQYMPSRGQYKVYLID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS      L   +E+                         + ATT    L   +  
Sbjct: 127 EVHMLSKAAFNALLKTLEE------------------PPGHVKFLLATTDPQKLPVTVLS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R  +   L   +   ++  + +     G+     A  ++A  + G+ R    LL +   +
Sbjct: 169 RC-LQFNLKRLDEGQIEGQMTKILAAEGIEADASAIRQLARAADGSLRDGLSLLDQAIAY 227

Query: 233 AEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVG-IETISAGLSE 291
           A       +  ++    L  +   ++         L  +A   G   +G IET++    +
Sbjct: 228 A----GGALREDVVQTMLGSVDRTQVA------ALLDALADGNGEALLGTIETLAGFAPD 277

Query: 292 PRDAIEDLIE 301
             + +E L E
Sbjct: 278 WGNVLEALAE 287


>gi|224118112|ref|XP_002331561.1| predicted protein [Populus trichocarpa]
 gi|222873785|gb|EEF10916.1| predicted protein [Populus trichocarpa]
          Length = 562

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 74/195 (37%), Gaps = 14/195 (7%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA---------GDLAALLTNLEDRD 107
           VLF GPPG GKT+ A+V+A + GV        V+            G +  L   + +  
Sbjct: 327 VLFEGPPGTGKTSCARVIATQAGVPLLYLPLEVVMSKYYGESERLLGKVFTLANEIPNGA 386

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           ++F+DE+   +   +  ++ A     L +++ +       K    +  +IAAT R   L 
Sbjct: 387 IIFLDEVDSFAAARDSEMHEATRRI-LSVLLRQIDGFEQDK----KVVVIAATNRKQDLD 441

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             L  RF   I     + ++ + I  + AK    +  +E A      S    R   +   
Sbjct: 442 PALISRFDSMITFGLPDRQNRQEIAAQYAKHLTESELEEFARVTEDMSGRDIRDVCQQAE 501

Query: 228 RVRDFAEVAHAKTIT 242
           R      +    +  
Sbjct: 502 RSWASKIIRGQASKD 516


>gi|156839538|ref|XP_001643459.1| hypothetical protein Kpol_483p20 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156114070|gb|EDO15601.1| hypothetical protein Kpol_483p20 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 783

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 56/282 (19%), Positives = 98/282 (34%), Gaps = 36/282 (12%)

Query: 20  SLLR------PR-TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPG 64
           S +R      P+    +  GQ +    +K  I+     AE        A   VL  GPPG
Sbjct: 502 SAMREIFLEMPKVYWSDIGGQDDLKRKMKEVIQLPLEAAETFANLGVSAPKGVLLYGPPG 561

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DVLFIDEIHR 116
             KT  A+ +A E G+NF +  GP I     G+    +  +  +       ++F DEI  
Sbjct: 562 CSKTLTAKALATESGINFLAVKGPEIFNKYVGESERAIREIFRKARAASPSIIFFDEIDA 621

Query: 117 LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RF 174
           +S   +     A     L  ++ E          L+   ++AAT R   +   L    R 
Sbjct: 622 ISAARDGGSSTAAASHVLTSLLNEIDGVE----ELNGVVIVAATNRPDEIDPALLRPGRL 677

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
              I +   + E    I+++      L  ++    E+A   + T   +G     V    +
Sbjct: 678 DRHIYVAPPDYEARLQILKKRTGKFNLEGSNVNLEELA---KHTEGCSGA---EVVLLCQ 731

Query: 235 VAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFG 276
            A    I  +     +  +  DK    ++       +   + 
Sbjct: 732 EAGLAAIMEDYNACKVNSIHFDK-ALSEISRGITEEMLEYYQ 772



 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 64/183 (34%), Gaps = 14/183 (7%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DV 108
           VL  GPPG GKT L + VA     +  + +GP I           L  +    +     +
Sbjct: 283 VLLHGPPGTGKTMLLRCVANSSNAHVLTINGPSIVSKYLGETEAKLREIFDEAQKYQPSI 342

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +FIDEI  L+          +E   +  ++              R  ++AAT R   +  
Sbjct: 343 IFIDEIDSLAPNRANDDSGEVESRVVATLLTL----MDGMGGSGRLVVVAATNRPNSVDP 398

Query: 169 PLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
            L+   RF   + +   +++    I+++               +I   +  T    G  L
Sbjct: 399 ALRRPGRFDQEVEIGIPDVDARFDILKKQFSRMSEERHTLNEDDIKNIASKTHGYVGADL 458

Query: 227 RRV 229
             +
Sbjct: 459 SAL 461


>gi|321472924|gb|EFX83893.1| hypothetical protein DAPPUDRAFT_315316 [Daphnia pulex]
          Length = 556

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 48/267 (17%), Positives = 82/267 (30%), Gaps = 21/267 (7%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RPR   +  GQ          I  A  R       LF G  G+GKTT A+++A  L
Sbjct: 30  ARKYRPRRFSQVVGQNILV----RLISQALKRDRLGHGFLFSGMRGIGKTTTARLLACYL 85

Query: 79  GVNFRSTSGPVIAKAG--DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME-----D 131
                  +   I   G  D        +  D++ +D      +     +  A        
Sbjct: 86  NCLNLRQTEGEIEPCGVCDSCRAFEAEKHIDIIEMDAASHTGVDDIREILEACRYRPVLG 145

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT +  +   +  R  +   L  
Sbjct: 146 RYKVFIIDEVHMLSKNAFNALLKTLEEPPEHVKFIFATTEIQKVLPTVVSRC-LRFDLKR 204

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            +   L   +Q       +    EA   +A    G+ R +  LL +    AE    +   
Sbjct: 205 LDPAVLVPYLQDICTKETIKADPEALLLLAQAGGGSARDSLSLLDQAILLAEQQSQENPC 264

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLT 269
            +  D   +   +D+  F  L    L 
Sbjct: 265 IQAQDVGQMLGLLDRKAFHTLFEAILQ 291


>gi|306843634|ref|ZP_07476235.1| DNA polymerase III, subunits gamma and tau [Brucella sp. BO1]
 gi|306276325|gb|EFM58025.1| DNA polymerase III, subunits gamma and tau [Brucella sp. BO1]
          Length = 602

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 48/248 (19%), Positives = 90/248 (36%), Gaps = 25/248 (10%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+  ++  GQ      L+   E  +         +  G  G+GKTT A+++AR L
Sbjct: 14  ARKYRPQNFDDLIGQEPMVRTLRNAFETGRIAQAW----MLTGVRGVGKTTTARILARAL 69

Query: 79  GVNFRSTSGPVI--AKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
                +   P I  +  G+    +      DV+ +D      I  +  I+E++ Y  +  
Sbjct: 70  NYKTDTVDQPTIDLSTPGEHCQAIMEGRHVDVIEMDAASHTGIDDIREIIEQVRYRPVSA 129

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT +  +   +  R      L  
Sbjct: 130 RYKVYIIDEVHMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKVPITVLSRCQ-RFDLRR 188

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            E   L   ++R A+   + V D +   IA    G+ R +  +     D A    A ++T
Sbjct: 189 IESGTLAQHLRRIAEAEKIEVDDASLAMIARAGEGSARDSLSIF----DQAIAHGAGSVT 244

Query: 243 REIADAAL 250
            +   + L
Sbjct: 245 ADAVRSML 252


>gi|257069947|ref|YP_003156202.1| DNA polymerase III, subunit gamma/tau [Brachybacterium faecium DSM
           4810]
 gi|256560765|gb|ACU86612.1| DNA polymerase III, subunit gamma/tau [Brachybacterium faecium DSM
           4810]
          Length = 1122

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 61/303 (20%), Positives = 102/303 (33%), Gaps = 33/303 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP +  E  GQ    + L+  + A +         LF GP G GKTT A+++AR
Sbjct: 4   ALYRRYRPESFAEVIGQDHVTTPLRRALRAGRIGHAY----LFSGPRGCGKTTSARILAR 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR--DVLFID-----EIHRLSIIVEEILYPAM 129
              +N       V     D    L N      DV+ ID      +     + E   +  +
Sbjct: 60  --CLNCVEGPTDVPCGQCDSCRDLANGGSGSLDVVEIDAASHGGVDDARELRERASFAPV 117

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            D     ++ E             + V+        + ATT    +   ++ R       
Sbjct: 118 RDRYKVFIIDEAHMVTSAGFNALLKLVEEPPEHVKFVFATTEPDKVIGTIRSR-THHYPF 176

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
                + L   ++       + V +     +     G+ R +  +L ++     +A A  
Sbjct: 177 RLIPPQVLGPYLEEVCAAEQVQVGEGVMPLVVRAGGGSARDSMSVLDQL-----MAGAGD 231

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVG-IETISAGLSEPRDAIEDL 299
              +   A  L    D    D    R +T +A        G +E + A   EPR  +EDL
Sbjct: 232 DGLDFPTAIALLGFTDTALLD----RAITAVAERDAASLYGAVEHVLATGHEPRRFVEDL 287

Query: 300 IEP 302
           +E 
Sbjct: 288 LER 290


>gi|119182767|ref|XP_001242497.1| hypothetical protein CIMG_06393 [Coccidioides immitis RS]
          Length = 398

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 65/189 (34%), Gaps = 32/189 (16%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
                   +   RP TL++ +G  +  + +  FIE+ +     L H+L  GPPG GKT+ 
Sbjct: 38  EAEDNLPWVEKYRPSTLDDVSGHQDIIATINRFIESNR-----LPHLLLYGPPGTGKTST 92

Query: 71  AQVVARE-------------------LGVNFRSTSGPVIAKAGDLAALL------TNLED 105
              +AR+                    G++         A    + ++       + L  
Sbjct: 93  ILALARQIYGVKNVRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMTPGGQAGSKLGA 152

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQLD--LMVGEGPSARSVKINLSRFTLIAATTRV 163
             ++ +DE   ++   +  L   ME +  +    +    + +     LSR T    +   
Sbjct: 153 FKLIILDEADAMTAAAQMALRRIMEKYTANTRFCIIANYTHKLTPALLSRCTRFRFSPLK 212

Query: 164 GLLTNPLQD 172
                 L D
Sbjct: 213 EQDIRVLVD 221


>gi|326926086|ref|XP_003209236.1| PREDICTED: replication factor C subunit 4-like [Meleagris
           gallopavo]
          Length = 362

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 82/242 (33%), Gaps = 34/242 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+ ++E   Q E  + LK  +E A      L ++LF GPPG GKT+     AR
Sbjct: 37  PWVEKYRPKNVDEVAFQDEVVAVLKKSLEGAD-----LPNLLFYGPPGTGKTSTILAAAR 91

Query: 77  ELG------------VNFRSTSGPVIAKAGDLAALLTNLEDR---------DVLFIDEIH 115
           EL                      VI +     A LT    R          ++ +DE  
Sbjct: 92  ELFGPELFRQRVLELNASDERGIQVIREKVKAFAQLTASGSRADGEVCPPFKIVILDEAD 151

Query: 116 RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
            ++   +  L   ME         +      +   +SR      +        PL D+  
Sbjct: 152 SMTSAAQAALRRTMEKES------KTTRFCLICNYISRIIEPLTSRCSKFRFKPLSDKIQ 205

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
               L+  E E++K  +   A    + V++    +     +   R+ G      +   E+
Sbjct: 206 QQRLLDVSEKENVK--ITSEAVSYLVKVSEGDLRKAITYLQSATRLMGGKEITEKTVTEI 263

Query: 236 AH 237
           A 
Sbjct: 264 AG 265


>gi|203287904|ref|YP_002222919.1| DNA polymerase III, gamma and tau subunits [Borrelia recurrentis
           A1]
 gi|201085124|gb|ACH94698.1| DNA polymerase III, gamma and tau subunits [Borrelia recurrentis
           A1]
          Length = 555

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 86/227 (37%), Gaps = 25/227 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPR      GQ      LK  IE+ K         +F GP G+GKT+ A+  +R L    
Sbjct: 19  RPRDFTSLEGQDFVVETLKHSIESNKIANAY----IFSGPRGVGKTSSARAFSRCLNCQ- 73

Query: 83  RSTSGPVIAKAGDLA--ALLTNLEDRDVLFIDEIHRLSII-----VEEILYPAMEDFQLD 135
              +GP I   G       + N    DV+ ID     S+       EEI++P        
Sbjct: 74  ---TGPTIMPCGTCFNCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPANSRYRV 130

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             ++V+   +    I ATT V  L + ++ R           ++
Sbjct: 131 YIIDEVHMLSNSAFNALLKTVEEPPNYIVFIFATTEVHKLPDTIKSRCQ-HFNFRLLPLD 189

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
            +  +++       +   DEA   IA +S G+ R A  L  ++   +
Sbjct: 190 KIYEMLKCVCLEDDIKYEDEALKWIAYKSGGSVRDAYTLFDQIVSLS 236


>gi|203284370|ref|YP_002222110.1| DNA polymerase III, subunits gamma and tau [Borrelia duttonii Ly]
 gi|201083813|gb|ACH93404.1| DNA polymerase III, subunits gamma and tau [Borrelia duttonii Ly]
          Length = 555

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 86/227 (37%), Gaps = 25/227 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPR      GQ      LK  IE+ K         +F GP G+GKT+ A+  +R L    
Sbjct: 19  RPRDFTSLEGQDFVVETLKHSIESNKIANAY----IFSGPRGVGKTSSARAFSRCLNCQ- 73

Query: 83  RSTSGPVIAKAGDLA--ALLTNLEDRDVLFIDEIHRLSII-----VEEILYPAMEDFQLD 135
              +GP I   G       + N    DV+ ID     S+       EEI++P        
Sbjct: 74  ---TGPTIMPCGTCFNCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPANSRYRV 130

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             ++V+   +    I ATT V  L + ++ R           ++
Sbjct: 131 YIIDEVHMLSNSAFNALLKTVEEPPNYIVFIFATTEVHKLPDTIKSRCQ-HFNFRLLPLD 189

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
            +  +++       +   DEA   IA +S G+ R A  L  ++   +
Sbjct: 190 KIYEMLKCVCLEDDIKYEDEALKWIAYKSGGSVRDAYTLFDQIVSLS 236


>gi|145299061|ref|YP_001141902.1| DNA polymerase III, subunits gamma and tau [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|142851833|gb|ABO90154.1| DNA polymerase III, subunits gamma and tau [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 865

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 64/324 (19%), Positives = 98/324 (30%), Gaps = 67/324 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP T E+  GQ    + L   ++  +     L H  L  G  G+GKTT+A+++A+ L   
Sbjct: 11  RPHTFEQVVGQHHVLTALTNALDQGR-----LHHAYLLSGTRGVGKTTIARILAKSLNCE 65

Query: 82  FRSTS------------------------GPVIAKAGDLAALLTNLEDRD------VLFI 111
              +S                             K  D   LL N++ R       V  I
Sbjct: 66  QGISSHPCGVCDTCREIDQGNFVDLLEIDAASRTKVEDTRELLDNVQYRPARGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSRHSFNALLKTLEE------------------PPPYVKFLLATTDPQKLPITIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L   +   +   ++             A   +A  + G+ R A  L     D
Sbjct: 168 SRC-LQFHLKSLDQTQIAKQLECVLDQEAQPFEPRALLALAKAADGSMRDALSL----TD 222

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLR-YLTMIARNFGGGPVGIETISAGLS 290
            A      ++  E   A L          D   L   L  I R      +   T  A L 
Sbjct: 223 QALAHGNGSVRLESVLAML-------GTLDHRHLHQLLEAILRQDAAATMAKITEIATLG 275

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTP 314
              D +   +E  + +    Q  P
Sbjct: 276 PDFDQLHAELEGLLHRVAMAQLLP 299


>gi|302510945|ref|XP_003017424.1| hypothetical protein ARB_04305 [Arthroderma benhamiae CBS 112371]
 gi|302657578|ref|XP_003020508.1| hypothetical protein TRV_05402 [Trichophyton verrucosum HKI 0517]
 gi|291180995|gb|EFE36779.1| hypothetical protein ARB_04305 [Arthroderma benhamiae CBS 112371]
 gi|291184348|gb|EFE39890.1| hypothetical protein TRV_05402 [Trichophyton verrucosum HKI 0517]
          Length = 362

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 85/222 (38%), Gaps = 18/222 (8%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   +   RP  L++  G  E    LK+      AR   + HV+  G PG+GKTT    +
Sbjct: 27  ELPWVEKYRPIFLDDVVGNTETIERLKII-----ARDGNMPHVIISGMPGIGKTTSILCL 81

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEI-HRLSIIVEEILYPAMEDFQ 133
           AR+L +        +   A D   LL    +  +  ID + +R+    ++ +       +
Sbjct: 82  ARQL-LGDTYKEAVLELNASDERGLLNYALN--LFRIDVVRNRIKGFAQKKVTLPPGRHK 138

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATT--------RVGLLTNPLQDRFGIPIRLNFYEI 185
           L ++          +  L R   I +TT        +   +  PLQ R  I       + 
Sbjct: 139 LVILDEADSMTSGAQQALRRTMEIFSTTTRFAFACNQSNKIIEPLQSRCAILRYSRLTDA 198

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
           + +K ++Q   +   +  +D+    +   + G  R A   L+
Sbjct: 199 QVVKRLMQ-ICEAEKVKYSDDGIAALVFSAEGDMRQAINNLQ 239


>gi|55926133|ref|NP_446238.1| replication factor C subunit 2 [Rattus norvegicus]
 gi|81884071|sp|Q641W4|RFC2_RAT RecName: Full=Replication factor C subunit 2; AltName:
           Full=Activator 1 subunit C2
 gi|51980598|gb|AAH82110.1| Replication factor C (activator 1) 2 [Rattus norvegicus]
 gi|149063102|gb|EDM13425.1| replication factor C (activator 1) 2, isoform CRA_b [Rattus
           norvegicus]
          Length = 349

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 77/227 (33%), Gaps = 38/227 (16%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   +   RP  L E  G  +  S L+VF     AR   + +++  GPPG GKTT    +
Sbjct: 30  ELPWVEKYRPVKLNEIVGNEDTVSRLEVF-----AREGNVPNIIIAGPPGTGKTTSILCL 84

Query: 75  AR------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIHRLSII 120
           AR            EL  +       V  K    A     L      ++ +DE   ++  
Sbjct: 85  ARALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDG 144

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            ++ L   ME +                   +RF    A      +  P+Q R  +    
Sbjct: 145 AQQALRRTMEIYSKT----------------TRF--ALACNASDKIIEPIQSRCAVLRYT 186

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
              + + L   +    +   +  TD+    I   ++G  R A   L+
Sbjct: 187 KLTDAQVLSR-LMNVIEKEKVPYTDDGLEAIIFTAQGDMRQALNNLQ 232


>gi|15991286|dbj|BAB69675.1| replication factor C 40kDa subunit [Oryza sativa Japonica Group]
 gi|116310007|emb|CAH67033.1| OSIGBa0139P06.6 [Oryza sativa Indica Group]
 gi|218195393|gb|EEC77820.1| hypothetical protein OsI_17026 [Oryza sativa Indica Group]
          Length = 335

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 51/260 (19%), Positives = 83/260 (31%), Gaps = 39/260 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP  + +  G  +A + L+V      AR   + +++  GPPG GKTT    +A 
Sbjct: 18  PWVEKYRPTRVADVVGNSDAVARLQVI-----ARDGNMPNLILSGPPGTGKTTSILSLAH 72

Query: 77  ------------ELGVNFRSTSGPVIAKAGDLA--ALLTNLEDRDVLFIDEIHRLSIIVE 122
                       EL  +       V  K    A   +        ++ +DE   ++   +
Sbjct: 73  ELLGPSYREAVLELNASDDRGLDVVRNKIKMFAQKKVTLQPGRHKIVILDEADSMTSGAQ 132

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           + L   ME +                 N +RF L   T+    +  P+Q R  I      
Sbjct: 133 QALRRTMEIYS----------------NTTRFALACNTS--SKIIEPIQSRCAIVRFSRL 174

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR-RVRDFAEVAHAKTI 241
            + E L  ++   A    +    E    I   + G  R A   L+  V  F  V      
Sbjct: 175 SDQEILGRLMIVVAAE-KVPYVPEGLEAIIFTADGDMRQALNNLQATVSGFRFVNQENVF 233

Query: 242 TREIADAALLRLAIDKMGFD 261
                   L    + K   D
Sbjct: 234 KVCDQPHPLHVKNMVKNVLD 253


>gi|315613323|ref|ZP_07888232.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
           ATCC 49296]
 gi|315314558|gb|EFU62601.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
           ATCC 49296]
          Length = 552

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 49/273 (17%), Positives = 80/273 (29%), Gaps = 55/273 (20%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     R +T  +  GQ      LK  +E      E + H  LF GP G GKT++A++ A
Sbjct: 4   ALYRKYRSQTFSQLVGQEVVAKTLKQAVE-----QEKISHAYLFSGPRGTGKTSVAKIFA 58

Query: 76  RELGVNFRS------------------------TSGPVIAKAGDLAALLTN------LED 105
           + +    +                                   ++  +         L  
Sbjct: 59  KAMNCPNQVDGEPCNNCYICQAVTEGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLAR 118

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
             V  IDE+H LS      L   +E+                         I ATT +  
Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPT------------------QNVVFILATTELHK 160

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           +   +  R       +    +    I     +   ++   EA   IA R+ G  R A  +
Sbjct: 161 IPATILSRVQRFEFKSIRTQDITAHI-HHILEKENISSEPEAVEIIARRAEGGMRDALSI 219

Query: 226 LRRVRDFAEVAHAKTITREIADAALLRLAIDKM 258
           L +     +     T   E     +   A+D  
Sbjct: 220 LDQALSLTQGNALTTAISEEITGTISLSALDDY 252


>gi|304360727|ref|YP_003856858.1| putative DNA polymerase III [Clostridium phage phiCTP1]
 gi|302495586|gb|ADL40366.1| putative DNA polymerase III [Clostridium phage phiCTP1]
          Length = 364

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 57/288 (19%), Positives = 97/288 (33%), Gaps = 36/288 (12%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +   +  RP T E+  GQ      L    E   A  E     LF+G  G GKTTLA+++A
Sbjct: 2   NNLATKYRPHTFEDVVGQENVKKIL----ENQVATKEFKQAYLFIGSAGTGKTTLARILA 57

Query: 76  RELGVN---FRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILY 126
             +  N        G       ++  ++ + +         +  IDE H L++     + 
Sbjct: 58  NAINANKGKPIEVDGASNNGVENVRKIIDDCKFKALDSKYKIYIIDECHMLTVGAWNAML 117

Query: 127 PAMEDF---QLDLMVGEGPSARSVKINLSRFTLIAA-----TTRVGLLTNPLQDRFGIPI 178
             +E+     + +     P  +     LSR              V  L   L+      +
Sbjct: 118 KVIEEPPANTIFMFCTTNPE-KIPDTILSRVQRFDIEKHSTENIVNRLEYILEKENEEIV 176

Query: 179 RLNFYEIEDLKTIV-QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                + + +      +   +    V ++A   IA  + G  R A  +L +V     VA+
Sbjct: 177 YNAGGDQDAVADPTWAQKEGIKLYNVDEDALRYIANLANGGMRDAITMLDKV-----VAY 231

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETI 285
            + IT +    AL        G        +   A       V I+TI
Sbjct: 232 DRDITLKSVYTAL--------GTTDYSQCIILTNALIGKDAKVAIDTI 271


>gi|301769425|ref|XP_002920130.1| PREDICTED: replication factor C subunit 2-like isoform 1
           [Ailuropoda melanoleuca]
          Length = 352

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 76/224 (33%), Gaps = 38/224 (16%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   +   RP  L E  G  +  S L+VF     AR   + +++  GPPG GKTT    +
Sbjct: 33  ELPWVEKYRPVKLNEIVGNEDTVSRLEVF-----AREGNVPNIIIAGPPGTGKTTSILCL 87

Query: 75  AR------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIHRLSII 120
           AR            EL  +       V  K    A     L      ++ +DE   ++  
Sbjct: 88  ARALLGPAFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDG 147

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            ++ L   ME +                   +RF    A      +  P+Q R  +    
Sbjct: 148 AQQALRRTMEIYSKT----------------TRF--ALACNASDKIIEPIQSRCAVLRYT 189

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGR 224
              + + L  ++    +   +  TD+    +   ++G  R A  
Sbjct: 190 KLSDAQVLARLLT-VLEQEKVPYTDDGLEAVIFTAQGDMRQALN 232


>gi|295694719|ref|YP_003587957.1| DNA polymerase III, subunits gamma and tau [Bacillus tusciae DSM
           2912]
 gi|295410321|gb|ADG04813.1| DNA polymerase III, subunits gamma and tau [Bacillus tusciae DSM
           2912]
          Length = 664

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/242 (16%), Positives = 71/242 (29%), Gaps = 53/242 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN- 81
           RP+   +  GQ      L+  +   +         LF GP G GKT++A+++A+ +    
Sbjct: 11  RPQLFADVVGQPHIVRTLQNALRNGRLAHAY----LFTGPRGTGKTSVAKILAKAVNCEQ 66

Query: 82  -----------------------FRSTSGPVIAKAGDLAALLTNLE------DRDVLFID 112
                                               ++  L   +          V  ID
Sbjct: 67  GSGEEPCNQCNACRGIMDGSVLDVVEIDAASNRGIDEVRELRDQVRYAPTQVRHKVYIID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H L+      L   +E+                         I ATT    +   +  
Sbjct: 127 EVHMLTPEAFNALLKTLEE------------------PPEHVIFILATTEPHKVPATIMS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R         Y  + +   ++      G    D+A   IA  + G  R A  +L +   F
Sbjct: 169 RCQRFAFQRIYAGD-MAERMKSILAHKGRQAEDKALWLIARAADGGLRDALSMLDQALSF 227

Query: 233 AE 234
           ++
Sbjct: 228 SD 229


>gi|119499175|ref|XP_001266345.1| DNA replication factor C subunit Rfc3, putative [Neosartorya
           fischeri NRRL 181]
 gi|119414509|gb|EAW24448.1| DNA replication factor C subunit Rfc3, putative [Neosartorya
           fischeri NRRL 181]
          Length = 396

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 67/211 (31%), Gaps = 34/211 (16%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
                   +   RP TL++ +G  +  + +  FIEA +     L H+L  GPPG GKT+ 
Sbjct: 40  EAQDNLPWVEKYRPNTLDDVSGHQDILATINKFIEANR-----LPHLLLYGPPGTGKTST 94

Query: 71  AQVVA------RELGVNFRSTSGPVIAKAGDLAALLTN-LEDRDVL-------------- 109
              +A        +       +         +   +      + +               
Sbjct: 95  ILALARRIYGSNNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMAAPSASSGSSLA 154

Query: 110 -----FIDEIHRLSIIVEEILYPAMEDFQLD--LMVGEGPSARSVKINLSRFTLIAATTR 162
                 +DE   ++   +  L   ME +  +    +    + +     LSR T    +  
Sbjct: 155 SFKLIILDEADAMTSTAQMALRRIMERYTANTRFCIIANYTHKLSPALLSRCTRFRFSPL 214

Query: 163 VGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
                  L D+  I       + E + ++V+
Sbjct: 215 KEQDIRSLVDQV-IEKEQIHIQPEAVSSLVR 244


>gi|329765595|ref|ZP_08257171.1| AAA family ATPase, CDC48 subfamily protein [Candidatus
           Nitrosoarchaeum limnia SFB1]
 gi|329138033|gb|EGG42293.1| AAA family ATPase, CDC48 subfamily protein [Candidatus
           Nitrosoarchaeum limnia SFB1]
          Length = 713

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 54/276 (19%), Positives = 93/276 (33%), Gaps = 27/276 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEA--------AKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           T EE  G      +++  +E          +   E    +L  GPPG GKT +A+V+A E
Sbjct: 169 TYEEVGGLGHEIKSMREIVELPLKHPELFVRLGVEPHSGILLYGPPGCGKTLIAKVLASE 228

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM 129
              N  S +GP I           L  +    +D    ++FIDEI  ++   EE  Y  +
Sbjct: 229 SEANMFSINGPEIMNKYYGETEAKLRDIFKEAKDNSPSIIFIDEIDAIAPKREE-AYGDV 287

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
           E   +  ++           +     ++ AT R   +   L+   RF     ++    + 
Sbjct: 288 EKRVVAQLLAL----MDGLNDRGNVIVLGATNRPESIDPALRRPGRFDREFEISVPNEDG 343

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
              I+    +   +A   +     +     T      L R     A   +   I  E   
Sbjct: 344 RLEILIIHTRGMPVADDVDLKDLASELHGYTGADIKSLCREAALKAIRRYLPEIDLETEK 403

Query: 248 ---AALLRLAIDKMGF-DQLDLRYLTMIARNFGGGP 279
                L  + I  + F D +     T +   +   P
Sbjct: 404 IPSDVLQSMQIKLIDFYDAMHDVIPTAMREFYVERP 439



 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 72/226 (31%), Gaps = 35/226 (15%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLT 101
           K         L  GPPG GKT +A+ +A E G N     GP I           +  +  
Sbjct: 472 KMGIRPPKGALIYGPPGCGKTLIARALATETGANMILVKGPEILSKWIGESEKAVREIFR 531

Query: 102 NLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINL-------- 151
             +     V+  DE+  L+                 L VGEG    +V   L        
Sbjct: 532 KAKTSSPCVVIFDELDSLAR----------------LKVGEGGVGETVLSQLLTEIEEGT 575

Query: 152 -SRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAA 208
            SR  +I  T R  +L N L    R  + + +   + +    I++   K   LA   +  
Sbjct: 576 SSRVVVIGITNRPDVLDNSLLRTGRLDLVLYVTPPDDKGRLEIIKILTKKMPLASDVKLE 635

Query: 209 CEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
                    T      L R     A   ++  IT       + ++ 
Sbjct: 636 EIAVATQNYTGADLAALCREAAVQAMRNNSAKITNSDFANGMKQVR 681


>gi|118445160|ref|YP_879267.1| DNA polymerase III subunits gamma and tau [Clostridium novyi NT]
 gi|118135616|gb|ABK62660.1| DNA polymerase III, gamma and tau subunits [Clostridium novyi NT]
          Length = 539

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 49/267 (18%), Positives = 91/267 (34%), Gaps = 33/267 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T +E  GQ      LK      + +   + H  LF G  G GKT+ A++ ++ +   
Sbjct: 11  RPQTFDEVVGQEHITLTLK-----NQMKNNRIAHAYLFCGTRGTGKTSTAKIFSKAVNCL 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDL 136
                G    +      +   L   DV  +D     ++  +  ++EE+ YP  E      
Sbjct: 66  NPQD-GEPCNECEMCKKISAGLSI-DVSEMDAASHNKVDDIRDLIEEVKYPPQEGRYKVY 123

Query: 137 MVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ++ E             ++++        I ATT    L   +  R            + 
Sbjct: 124 IMDEAHMLTQGAVNAFLKTLEEPPENVIFILATTDPQKLPITILSRCQRFDFKRIKSDDI 183

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           L  +++   K  G+   +++   IA  S G  R A  +L    D A       +  E   
Sbjct: 184 LGRLIK-ITKEQGIFGDNKSLKLIARMSDGAMRDALSIL----DQAISMGNGKVDYEQVI 238

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARN 274
             L  +  + +      ++    I   
Sbjct: 239 NMLGLVTNENL------IKLTNTIIDK 259


>gi|326383531|ref|ZP_08205217.1| DNA polymerase III subunits gamma and tau [Gordonia neofelifaecis
           NRRL B-59395]
 gi|326197615|gb|EGD54803.1| DNA polymerase III subunits gamma and tau [Gordonia neofelifaecis
           NRRL B-59395]
          Length = 790

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 47/259 (18%), Positives = 89/259 (34%), Gaps = 31/259 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP T  E  GQ    + L   ++  +         LF GP G GKT+ A+++AR L    
Sbjct: 8   RPATFAEVVGQEHVTAPLSRALDTGRINHAY----LFSGPRGCGKTSSARILARSLNCE- 62

Query: 83  RSTSGPVIAKAGDLAALLT----NLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQ 133
               GP     G  ++ ++       + DV+ +D      +     + +   Y   E   
Sbjct: 63  ---QGPTSTPCGTCSSCVSLGPGGPGNLDVVELDAASHGGVDDTRDLRDRAFYAPAESRY 119

Query: 134 LDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
              ++ E             + V+        I ATT    +   ++ R           
Sbjct: 120 RVFIIDEAHMVSSAGFNALLKIVEEPPEHLIFIFATTEPEKVLTTIKSR-THHYPFRLLA 178

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR- 243
              ++ +++       + V  E    +     G+PR +  +L ++   A           
Sbjct: 179 PPVMRGLLEGICAKEHVVVAPEVYPLVIRAGGGSPRDSLSILDQLLAGAGDEGVTYDRAL 238

Query: 244 ---EIADAALLRLAIDKMG 259
               + D+AL+  A+D +G
Sbjct: 239 SLLGVTDSALIDAAVDALG 257


>gi|313902767|ref|ZP_07836164.1| DNA polymerase III, subunits gamma and tau [Thermaerobacter
           subterraneus DSM 13965]
 gi|313466887|gb|EFR62404.1| DNA polymerase III, subunits gamma and tau [Thermaerobacter
           subterraneus DSM 13965]
          Length = 781

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 75/224 (33%), Gaps = 21/224 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  +   GQ      L   +   +         LF GP G GKT++A+++A+ +    
Sbjct: 13  RPQRFDGVVGQEHVIRTLANALRTGRVAHAY----LFAGPRGTGKTSVAKLLAKAVNCQS 68

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P      DL   + +    DVL ID      I  +  + E + Y          +
Sbjct: 69  PEGVEPCNRC--DLCREINDGSTMDVLEIDAASNRGIDEIRELRERVRYAPARGRYKVYI 126

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++   +    I ATT    L   +  R       +    E +
Sbjct: 127 IDEVHMLTTEAFNALLKTLEEPPTHALFILATTEPHRLPATIVSRCQ-RFDFHRLSPEQI 185

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
              ++      G+    EA   +A  + G  R A  LL +    
Sbjct: 186 VQRLEAVCTAMGVEAEPEALRLLARLAEGGLRDALSLLDQCLAM 229


>gi|313890779|ref|ZP_07824404.1| DNA polymerase III, subunit gamma and tau [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313120880|gb|EFR43994.1| DNA polymerase III, subunit gamma and tau [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 560

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 51/279 (18%), Positives = 97/279 (34%), Gaps = 24/279 (8%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     R +T  E  GQ    + LK  + + K         LF GP G GKT+ A++ A+
Sbjct: 4   ALYRKYRSQTFAEMVGQKVVSTTLKQAVSSGKISHAY----LFSGPRGTGKTSAAKIFAK 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +    +    P      D+   +TN    DV+ ID      +  +  I ++  Y     
Sbjct: 60  AMNCPNQVDGEPCNHC--DICRDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRA 117

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT +  +   +  R       + 
Sbjct: 118 TYKVYIIDEVHMLSSGAFNALLKTLEEPSQNVVFILATTELHKIPATILSRVQRFEFKSI 177

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            + + + + +    +   +   + A   IA R+ G  R A  +L +    +         
Sbjct: 178 KQND-ISSHLAWILETEEIPYQEAALDLIARRAEGGMRDALSILDQALSLSSENQVDLAI 236

Query: 243 REIADAALLRLAIDK--MGFDQLDLR-YLTMIARNFGGG 278
            E    ++   A+D   +     D +  L+ +A  F  G
Sbjct: 237 AEEITGSISLAALDTYVLNLSHHDAQAALSDLATIFDNG 275


>gi|326804634|ref|YP_004327505.1| Gp44-sliding clamp holder [Salmonella phage Vi01]
 gi|301795284|emb|CBW38002.1| Gp44-sliding clamp holder [Salmonella phage Vi01]
          Length = 329

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 68/203 (33%), Gaps = 32/203 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP-PGLGKTTLAQVVA 75
           A  +  RP  L+E     +  + +  ++ +       +  +LF  P PG GKTT A  V 
Sbjct: 12  AWENKYRPDNLDEIVLPSDVRAKIHGYVTSG---NGNIPSMLFYSPQPGTGKTTSALAVC 68

Query: 76  RELGVNFRSTSGPVIAKAGDL--------AALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127
            E+G          +  + D+        A  ++    R V+ +DE+ RLS+  +E L  
Sbjct: 69  NEIGCVKPLMINASLDNSIDVIRDRVIQYATGVSVFGGRKVVILDEVERLSMAAQESLKG 128

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP--IRLNFYEI 185
            +E                        + I  T     +  PL+ R      I       
Sbjct: 129 IVEKVS------------------KNCSFILTTNAKQRVNEPLRSRCREIDFIWSEKEAD 170

Query: 186 EDLKTIVQRGAKLTGLAVTDEAA 208
           E     ++R A +         A
Sbjct: 171 EVKLQFMRRCATILTEEGIPYEA 193


>gi|297193443|ref|ZP_06910841.1| DNA polymerase III subunits gamma and tau [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297151784|gb|EFH31358.1| DNA polymerase III subunits gamma and tau [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 458

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/237 (19%), Positives = 77/237 (32%), Gaps = 23/237 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP +  E  GQ      L+  +   +         LF GP G GKTT A+++AR
Sbjct: 15  ALYRRYRPESFAEVIGQEHVTDPLQQALRNNRVNHAY----LFSGPRGCGKTTSARILAR 70

Query: 77  ELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFIDEIHRLSII------VEEILYPA 128
            L      T  P        DLA   T     DV+ ID      +        +    PA
Sbjct: 71  CLNCEQGPTPTPCGECQSCQDLA--RTGPGSIDVIEIDAASHGGVDDARELREKAFFGPA 128

Query: 129 MEDFQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
              +++ ++         G     + V+        I ATT    +   ++ R       
Sbjct: 129 SSRYKIYIIDEAHMVTPAGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSR-THHYPF 187

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                  L+T +       G+ V D     +     G+ R +  ++ ++   A    
Sbjct: 188 RLVPPGTLRTYLAEVCGREGIPVEDGVLPLVVRAGAGSVRDSMSVMDQLLAGAADDG 244


>gi|260822034|ref|XP_002606408.1| hypothetical protein BRAFLDRAFT_67659 [Branchiostoma floridae]
 gi|229291749|gb|EEN62418.1| hypothetical protein BRAFLDRAFT_67659 [Branchiostoma floridae]
          Length = 997

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 59/341 (17%), Positives = 117/341 (34%), Gaps = 65/341 (19%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLA 71
           S+E+ D++  R    E+  G  +  + +  FI  ++ R      +L F GPPG+GKT++A
Sbjct: 526 SEENLDLARARAVLEEDHYGMDDVKNRILEFIAVSQLRGSVQGKILCFYGPPGVGKTSIA 585

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNL----------------EDRDVLFIDEIH 115
           + +AR L   +   S   +    ++                        +  ++ IDE+ 
Sbjct: 586 RSIARALSREYFRFSVGGMTDVAEIKGHRRTYVGAMPGKVIQCLKKTKTENPLVLIDEVD 645

Query: 116 RLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           ++    +        E+L P      LD  +        V ++LS+   I     +  + 
Sbjct: 646 KIGRGYQGDPSSALLELLDPEQNANFLDHYL-------DVSVDLSKVLFICTANIIDTIP 698

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
            PL+DR  +     +   E L       A+   +      A     +          L++
Sbjct: 699 EPLRDRMEMIDVSGYVAQEKLA-----IAEKYLVPKARLDAGVSEEKVSLDEDAISALIK 753

Query: 228 RVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISA 287
                + V + +   +++   A              D  ++T++A N             
Sbjct: 754 SYCRESGVRNLEKQIQKVFRKA-------AYKLVNGDAEHVTVMAENLQD---------- 796

Query: 288 GLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
                      + +P    +     TP G ++M +AW  LG
Sbjct: 797 ----------YVGKPIFTSERMYANTPPG-VVMGLAWTSLG 826


>gi|167518313|ref|XP_001743497.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163778596|gb|EDQ92211.1| predicted protein [Monosiga brevicollis MX1]
          Length = 384

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 56/283 (19%), Positives = 102/283 (36%), Gaps = 41/283 (14%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR-- 76
           +   RP+ L++  G     S LKV      A+   + +++  GPPG+GKTT    +AR  
Sbjct: 68  VEKYRPQVLDDIVGNEATVSRLKVI-----AKDGNMPNIIIAGPPGIGKTTSILCLARTL 122

Query: 77  ----------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIHRLSIIVEEI 124
                     E   +       V  K    A    +L      ++ +DE+  ++   ++ 
Sbjct: 123 LGKSYKEAVMETNASDDRGIDVVRNKIKMFAKKKVSLPPGRHKIVILDEVDSMTPTAQQA 182

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           L   +E +                 N +RF L   T+    + +P+Q R  I       +
Sbjct: 183 LRRTIELYS----------------NTTRFALACNTSE--KIIDPIQSRCTILRYTRLTD 224

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA-GRLLRRVRDFAEVAHAKTITR 243
            + LK ++    +   +   D     +   + G  R A   L    + F E++  K    
Sbjct: 225 AQVLKRLID-VCQAEKIVQLDSGLEALIFTAEGDMRQAINNLQSTHQSFGEISADKVFKV 283

Query: 244 EIADAALLRLAIDKMGFD-QLDLRYLTMIARNFGGGPVGIETI 285
                 LL   + K   +  +D+ Y   +A  +  G   I+ I
Sbjct: 284 CDQPHPLLVKNVVKACLEGSIDVAY-DGLAELWRLGYAAIDII 325


>gi|311897064|dbj|BAJ29472.1| putative DNA polymerase III subunit gamma/tau [Kitasatospora setae
           KM-6054]
          Length = 738

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 58/175 (33%), Gaps = 26/175 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T  E  GQ    + L+  +   +         LF GP G GKTT A+++AR
Sbjct: 4   ALYRRYRPETFAEVIGQEHVTAPLQQALRNNRVNHAY----LFSGPRGCGKTTSARILAR 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR----DVLFIDEIHRLSIIVEEILY------ 126
            L        GP     G+  +            DV+ ID      +     L       
Sbjct: 60  CLNCE----QGPTPDPCGECQSCRDLATGGPGSIDVIEIDAASHGGVDDARELRERAFFA 115

Query: 127 PAMEDFQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           P    +++ ++         G     + V+        I ATT    +   ++ R
Sbjct: 116 PVHSRYKIFILDEAHMVTSAGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSR 170


>gi|302559824|ref|ZP_07312166.1| DNA polymerase III, subunit gamma and tau [Streptomyces
           griseoflavus Tu4000]
 gi|302477442|gb|EFL40535.1| DNA polymerase III, subunit gamma and tau [Streptomyces
           griseoflavus Tu4000]
          Length = 459

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 59/175 (33%), Gaps = 26/175 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP +  E  GQ      L+  +   +         LF GP G GKTT A+++AR
Sbjct: 27  ALYRRYRPESFAEVIGQEHVTDPLQQALRNNRVNHAY----LFSGPRGCGKTTSARILAR 82

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR----DVLFIDEIHRLSII------VEEILY 126
            L        GP     G+  +      +     DV+ ID      +        +    
Sbjct: 83  CLNCEK----GPTPTPCGECQSCQDLARNGPGSIDVIEIDAASHGGVDDARDLREKAFFG 138

Query: 127 PAMEDFQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           PA   +++ ++         G     + V+        I ATT    +   ++ R
Sbjct: 139 PAGSRYKIYIIDEAHMVTSAGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSR 193


>gi|224825855|ref|ZP_03698959.1| DNA polymerase III, subunits gamma and tau [Lutiella nitroferrum
           2002]
 gi|224602079|gb|EEG08258.1| DNA polymerase III, subunits gamma and tau [Lutiella nitroferrum
           2002]
          Length = 657

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 50/268 (18%), Positives = 88/268 (32%), Gaps = 41/268 (15%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+   +  GQ      L   +       E L H  L  G  G+GKTT+A+++A+ L   
Sbjct: 32  RPKRFADLVGQEHVVRALTNAL-----AGERLHHAYLLTGTRGVGKTTIARILAKSLNCE 86

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR--DVLFID-----EIHRLSIIVEEILYPAMEDFQL 134
               + P     G+ +A       R  D+L ID      I  +  ++E   Y        
Sbjct: 87  AGVGAEP----CGECSACRQIDAGRFVDLLEIDAASNTGIDNIREVLENAQYAPTSGRYK 142

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             ++ E             ++++   +    I ATT    +   +  R  +   L     
Sbjct: 143 VYIIDEVHMLSKSAFNAMLKTLEEPPAHVKFILATTDPQKVPVTVLSRC-LQFSLRNMTP 201

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           + +   + R   +  ++    A   +   + G+ R A  LL    D A       +    
Sbjct: 202 QQVAGHLARVLDVEQVSYEAPALALLGRAAAGSMRDALSLL----DQAIAYGVGKVEEGG 257

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIAR 273
             A L  +          D  YL  +  
Sbjct: 258 VRAMLGAV----------DRAYLYTLLE 275


>gi|304387172|ref|ZP_07369415.1| DNA polymerase III, gamma/tau subunit DnaX [Neisseria meningitidis
           ATCC 13091]
 gi|304338739|gb|EFM04850.1| DNA polymerase III, gamma/tau subunit DnaX [Neisseria meningitidis
           ATCC 13091]
          Length = 738

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 55/176 (31%), Gaps = 38/176 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T  +  GQ      L+  ++  +     L H  L  G  G+GKTT+A+++A+ L   
Sbjct: 40  RPKTFSDLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCE 94

Query: 82  FRS------------------------TSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                                ++  +L N +         V  I
Sbjct: 95  NAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYII 154

Query: 112 DEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
           DE+H LS      +   +E+    +  ++      +     LSR            
Sbjct: 155 DEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTSQ 210


>gi|14590058|ref|NP_142122.1| replication factor C small subunit [Pyrococcus horikoshii OT3]
 gi|42559333|sp|O57852|RFCS_PYRHO RecName: Full=Replication factor C small subunit; Short=RFC small
          subunit; AltName: Full=Clamp loader small subunit;
          Contains: RecName: Full=Pho RFC intein
 gi|3256498|dbj|BAA29181.1| 855aa long hypothetical replication factor C subunit [Pyrococcus
          horikoshii OT3]
          Length = 855

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 7/94 (7%)

Query: 2  MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
          M     +      E   +   RP+ L+E  GQ      LK +++       ++ H+LF G
Sbjct: 1  MHNMEEVREVKVLEKPWVEKYRPQRLDEIVGQEHIVKRLKHYVKTG-----SMPHLLFAG 55

Query: 62 PPGLGK--TTLAQVVARELGVNFRSTSGPVIAKA 93
          PPG+GK  T   +V+A       R     +    
Sbjct: 56 PPGVGKCLTGDTKVIANGQLFELRELVEKISGGK 89



 Score = 38.1 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 59/182 (32%), Gaps = 32/182 (17%)

Query: 62  PPGLGKTTLAQVVARE-----LGVNFRSTSGPVIAKAGDLAALLTNLED--------RDV 108
           P  +  TT A  ++RE        NF   +         +   +               +
Sbjct: 581 PTVVHNTTAALALSRELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKI 640

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +F+DE   L+   ++ L   ME F                   S    I +      +  
Sbjct: 641 IFLDEADALTQDAQQALRRTMEMFS------------------SNVRFILSCNYSSKIIE 682

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
           P+Q R  I  R      ED+   ++  A+  GL +T+E    I   + G  R A  +L+ 
Sbjct: 683 PIQSRCAI-FRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQA 741

Query: 229 VR 230
             
Sbjct: 742 AA 743


>gi|328675333|gb|AEB28008.1| DNA polymerase III subunits gamma and tau [Francisella cf. novicida
           3523]
          Length = 546

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 79/249 (31%), Gaps = 57/249 (22%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP++  E  GQ  A ++L   +E  K         LF G  G+GKTTL +++A+
Sbjct: 5   ALARKYRPQSFSEVAGQQHALNSLVHALETQKVHHAY----LFTGTRGVGKTTLGRLLAK 60

Query: 77  ELGVNF------------------------RSTSGPVIAKAGDLAALLTNLE------DR 106
            L                                        +   +L N++        
Sbjct: 61  CLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRY 120

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164
            V  IDE+H LS      L   +E+    +  ++      +     LSR   +       
Sbjct: 121 KVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQ 180

Query: 165 LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGR 224
                                + LKT++        +   +++   IA  ++G+ R A  
Sbjct: 181 ADIK-----------------DQLKTVL----AKENINSDEQSLEYIAYHAKGSLRDALS 219

Query: 225 LLRRVRDFA 233
           LL +   F 
Sbjct: 220 LLDQAISFC 228


>gi|294101730|ref|YP_003553588.1| DNA polymerase III, subunits gamma and tau [Aminobacterium
           colombiense DSM 12261]
 gi|293616710|gb|ADE56864.1| DNA polymerase III, subunits gamma and tau [Aminobacterium
           colombiense DSM 12261]
          Length = 554

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 83/229 (36%), Gaps = 20/229 (8%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
              RP   ++   Q  A   +   +E  +         LF GP G GKTTLA+++A+ L 
Sbjct: 7   RRYRPAQFKQIVAQDAAVQVITKALEEKRVSHAY----LFSGPRGCGKTTLARLLAKSLN 62

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII-----VEEILYPAMEDFQL 134
              +  S        +  A+    E  DV+ ID     S+         +   A      
Sbjct: 63  CTGQKQSVEPCNDCPNCLAI-NGGESLDVIEIDGASNNSVDEVRELKAHVSLSAFSSLYK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             ++ E             ++++   S    I ATT    +   ++ R    I     ++
Sbjct: 122 VYIIDEVHMLSLSAFNALLKTLEEPPSHVVFILATTEPHKVPVTIRSRCQ-HIPFRKIDV 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
           +++   +   A        +EA  EIA ++ G  R A  LL +V   AE
Sbjct: 181 QNIVKSLSMVAHNENRNAEEEALWEIARQADGAMRDALSLLEQVMALAE 229


>gi|224074887|ref|XP_002304476.1| predicted protein [Populus trichocarpa]
 gi|222841908|gb|EEE79455.1| predicted protein [Populus trichocarpa]
          Length = 330

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 50/235 (21%), Positives = 79/235 (33%), Gaps = 39/235 (16%)

Query: 9   SRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           S N S  D   +   RP  + +  G  +A S L+V      AR   + +++  GPPG GK
Sbjct: 4   SSNSSNYDIPWVEKYRPNKVADIVGNQDAVSRLQVI-----ARDGNMPNLILAGPPGTGK 58

Query: 68  TTLAQVVAR------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDE 113
           TT    +A             EL  +       V  K    A     L      ++ +DE
Sbjct: 59  TTSILALAHELLGPNSKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGQHKIVILDE 118

Query: 114 IHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
              ++   ++ L   ME +                 N +RF L   T+    +  P+Q R
Sbjct: 119 ADSMTSGAQQALRRTMEIYS----------------NSTRFALACNTS--SKIIEPIQSR 160

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
             I       + E L  ++        +    E    I   + G  R A   L+ 
Sbjct: 161 CAIVRFSRLSDQEILGRLMV-VVGAEQVPYVPEGLEAIIFTADGDMRQALNNLQA 214


>gi|116753401|ref|YP_842519.1| AAA family ATPase, CDC48 subfamily protein [Methanosaeta
           thermophila PT]
 gi|116664852|gb|ABK13879.1| AAA family ATPase, CDC48 subfamily [Methanosaeta thermophila PT]
          Length = 739

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 56/293 (19%), Positives = 102/293 (34%), Gaps = 30/293 (10%)

Query: 11  NVSQEDADISLLR------PR-TLEEFTGQVEACSNLKVFIEAAKARAEALDHV------ 57
            ++ ++ + S +R      P+ + +   G  +    L   IE    R E  +H+      
Sbjct: 440 EMALKEIEPSAMREVLVELPKVSWDSVGGLGQIKQELIEAIEWPLKRPERFEHMGIKPPK 499

Query: 58  --LFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLED--RD 107
             L  GPPG GKT +AQ VA E   NF S  GP      V      +  +    +     
Sbjct: 500 GILLYGPPGTGKTLIAQAVANETNANFISVRGPQLLSKWVGESERAIREIFRKAKQVSPT 559

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           ++F DE+  ++ +        + +  ++ ++ E         +L    +I AT R  ++ 
Sbjct: 560 IIFFDELDAIAPMRGMDEGARVTERVVNQLLAE----MDGLEDLKNVIVIGATNRPDMID 615

Query: 168 NPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
             L    RF   I +   + +    I++  A     +          +         G L
Sbjct: 616 PALLRSGRFDRLIMIGPPDRDGRLEILRIHASRIPNSEDVNLEELAELTDGYVGADLGAL 675

Query: 226 LRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
            R     A   +      E+    L  L   +   ++  + Y   I+  F GG
Sbjct: 676 CREAVLLALRENENAEIVEMKHY-LEALKRVRPSVEESMISYYERISERFRGG 727



 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 60/304 (19%), Positives = 111/304 (36%), Gaps = 42/304 (13%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLT 101
           K   +    VL  GPPG GKT +A+ VA E G +F S +GP I           L  +  
Sbjct: 220 KLGIDPPKGVLLYGPPGTGKTLIAKAVANESGASFFSIAGPEIMSKYYGESEQRLREIFE 279

Query: 102 NLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA 159
                   ++FIDE+  ++    E     +       +V +  +         +  +I A
Sbjct: 280 EANSNTPSIVFIDELDSIAPKRSE-----VTGEVERRVVAQLLAMMDGLKERGQLVVIGA 334

Query: 160 TTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRG 217
           T R+  +   L+   RF   I +   + +D   I+Q   +   LA  D    E+A R+ G
Sbjct: 335 TNRIDAIDPALRRPGRFDREIEIGVPDRDDRVEILQIHVRNMPLA-DDVNLEELANRTHG 393

Query: 218 TPRIAGRLL------RRVRDFAEVAHAKTITREIADAALLRLAID-KMGFDQLDLRYLTM 270
                   L      + +R +      +         ++     D +M   +++    + 
Sbjct: 394 FVGADIAALCKEAAMKALRRYLPDLGTEDDIPPEIVESMKVTRDDFEMALKEIEP---SA 450

Query: 271 IARNFGGGP-VGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329
           +       P V  +++  GL + +  + + IE  + +              P  ++H+GI
Sbjct: 451 MREVLVELPKVSWDSV-GGLGQIKQELIEAIEWPLKR--------------PERFEHMGI 495

Query: 330 DIPH 333
             P 
Sbjct: 496 KPPK 499


>gi|220905406|ref|YP_002480718.1| DNA polymerase III subunits gamma/tau [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219869705|gb|ACL50040.1| DNA polymerase III, subunits gamma and tau [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 741

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 74/224 (33%), Gaps = 21/224 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           +  S  RP+T  +  GQ    + L      A A        L  G  G+GKTT+A++ A+
Sbjct: 5   SLASRYRPQTFAQVAGQDMVKAVLSR----AAAEDRPAAAYLLSGTRGVGKTTIARIFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL-----YPAMED 131
            L         P   +      +   +   DV  ID     S+     L     Y AME 
Sbjct: 61  ALNCEHSPGPEP-CNECAQCRKITQGVHV-DVTEIDGASNNSVEDARSLRETIGYAAMEG 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++    R   I ATT        +  R         
Sbjct: 119 RYKVFIIDEAHMLTRNAFNALLKTLEEPPERVVFIFATTEAHKFPVTIVSRCQ-HFVFRH 177

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
              + L   +    +   +   D A   +A R+ G+ R +  LL
Sbjct: 178 LSKDALVEHLSGVLRKENVTFEDSAVRLLARRAAGSVRDSMSLL 221


>gi|223939210|ref|ZP_03631092.1| DNA polymerase III, subunits gamma and tau [bacterium Ellin514]
 gi|223892163|gb|EEF58642.1| DNA polymerase III, subunits gamma and tau [bacterium Ellin514]
          Length = 609

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 54/180 (30%), Gaps = 36/180 (20%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+   +  GQ      L   I + +         LFVGP G GKTT+A++ A+ L
Sbjct: 7   ARKYRPQRFSDVVGQEHVSQTLSNAIASNRIAHAY----LFVGPRGTGKTTIARIFAKCL 62

Query: 79  GV------------------------NFRSTSGPVIAKAGDLAALLTNLE------DRDV 108
                                     +     G       ++  L   ++         +
Sbjct: 63  NCTGGPKVDFPDDDPRCQEITEGRSLDVLEIDGASNRGIEEIRELRDTVKYAPATSKFKI 122

Query: 109 LFIDEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
             IDE+H L+      L   +E+    +  M       + +   LSR            L
Sbjct: 123 YIIDEVHMLTKEAFNALLKTLEEPPAHVKFMFATTEPEKVLPTILSRCQRFDLRRIPSAL 182


>gi|169335258|ref|ZP_02862451.1| hypothetical protein ANASTE_01666 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257996|gb|EDS71962.1| hypothetical protein ANASTE_01666 [Anaerofustis stercorihominis DSM
           17244]
          Length = 645

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 57/269 (21%), Positives = 89/269 (33%), Gaps = 58/269 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGV- 80
           RP+  EE  GQ    + LK  I+      +++ H  LF G  G GKT+ A+V A+ +   
Sbjct: 11  RPKNFEEIIGQDNIVNILKNQIK-----NDSISHAYLFSGIRGTGKTSTAKVFAKSICCL 65

Query: 81  --------------------------NFRSTSGPVIAKAGDLAALLT---NLEDRDVLFI 111
                                        + S   I +  DL   +    N     V  I
Sbjct: 66  NNKEGEACNECASCNDINIGDGADIVEIDAASNRGIDEIRDLKEKVNYMPNFGRYKVYII 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H L+      L   +E+                    S    I ATT    +   + 
Sbjct: 126 DEVHMLTTEAFNALLKTLEE------------------PPSHIVFIFATTEPNKILPTIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R       N  + E +   +        +    EA   IA+ + G  R A  LL +   
Sbjct: 168 SRCQ-RFDFNRIDSEVVVNHLASILDKKEIEYEKEALELIALNTEGALRDALSLLDKAIS 226

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGF 260
              V     IT+E AD  L  ++ +++  
Sbjct: 227 ---VVKDNKITKETADDILGLISDEEIFL 252


>gi|322375394|ref|ZP_08049907.1| DNA polymerase III, gamma and tau subunits [Streptococcus sp. C300]
 gi|321279657|gb|EFX56697.1| DNA polymerase III, gamma and tau subunits [Streptococcus sp. C300]
          Length = 554

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 55/296 (18%), Positives = 90/296 (30%), Gaps = 58/296 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     R +T  +  GQ      LK  +E      E + H  LF GP G GKT++A++ A
Sbjct: 4   ALYRKYRSQTFSQLVGQEVVAKTLKQAVE-----QEKISHAYLFSGPRGTGKTSVAKIFA 58

Query: 76  RELGVNFRS------------------------TSGPVIAKAGDLAALLTN------LED 105
           + +    +                                   ++  +         L  
Sbjct: 59  KAMNCPNQVDGEPCNNCYICQAVTEGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLAR 118

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
             V  IDE+H LS      L   +E+                         I ATT +  
Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPT------------------QNVVFILATTELHK 160

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           +   +  R       +    + +K  +Q       ++   EA   IA R+ G  R A  +
Sbjct: 161 IPATILSRVQRFEFKSIRTQD-IKDHIQTILSKENISSEPEAVEIIARRAEGGMRDALSI 219

Query: 226 LRRVRDFAEVAHAKTITREIADAALLRLAIDKM--GFDQLDL-RYLTMIARNFGGG 278
           L +     +     T   E     +   A+D       Q D+ + L  +   F  G
Sbjct: 220 LDQALSLTQGNALTTAISEEITGTISLSALDDYVAALSQQDVSKALDSLNLLFENG 275


>gi|253682734|ref|ZP_04863530.1| DNA polymerase III subunit gamma/tau [Clostridium botulinum D str.
           1873]
 gi|253561056|gb|EES90509.1| DNA polymerase III subunit gamma/tau [Clostridium botulinum D str.
           1873]
          Length = 541

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 51/267 (19%), Positives = 92/267 (34%), Gaps = 33/267 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPRT EE  GQ      LK      + +   + H  LF G  G GKT+ A++ ++ +   
Sbjct: 11  RPRTFEEVVGQEHITLTLK-----NQMKNNRIAHAYLFCGTRGTGKTSTAKIFSKAVNCL 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDL 136
                 P      D+   +      DV  +D     ++  +  ++EE+ YP  E      
Sbjct: 66  NPQDGEPCNEC--DMCKKINAGLAIDVSEMDAASHNKVDDIRDLIEEVKYPPREGKYKVY 123

Query: 137 MVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ++ E             ++++    +   I ATT    L   +  R            + 
Sbjct: 124 IMDEAHMLTQGAVNAFLKTLEEPPEKVVFILATTDPQKLPITILSRCQRFDFKRIKSDDI 183

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            + +++   K  G+   +++   IA  S G  R A  +L    D A       +  +   
Sbjct: 184 FERLIK-ITKEQGIFADNKSLSLIARMSDGAMRDALSIL----DQAISMGNGKVDYDQVI 238

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARN 274
             L  +  D +      L+    I   
Sbjct: 239 NMLGLVTNDNL------LKLTNTIIDK 259


>gi|242211529|ref|XP_002471602.1| predicted protein [Postia placenta Mad-698-R]
 gi|220729278|gb|EED83155.1| predicted protein [Postia placenta Mad-698-R]
          Length = 350

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 56/156 (35%), Gaps = 20/156 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP TL++     +  S ++ FIE        L H+LF GPPG GKT+    VAR
Sbjct: 32  PWVEKYRPVTLDDVVSHKDITSTIEKFIE-----KNRLPHLLFYGPPGTGKTSTILAVAR 86

Query: 77  -----ELGVNFRSTSGPVIAKAGDLAALLTN--------LEDRDVLFIDEIHRLSIIVEE 123
                +        +         +   + N        L+   ++ +DE   ++   + 
Sbjct: 87  RIYGKDYRKQILELNASDDRGIDVVREQIKNFAETRTLFLKGYKLIILDEADMMTTAAQA 146

Query: 124 ILYPAMEDFQ--LDLMVGEGPSARSVKINLSRFTLI 157
            L   +E +   +   +      + +    SR T  
Sbjct: 147 ALRRVIEQYTKNVRFCIICNYVNKIIPAIQSRCTRF 182


>gi|197302301|ref|ZP_03167360.1| hypothetical protein RUMLAC_01028 [Ruminococcus lactaris ATCC
           29176]
 gi|197298732|gb|EDY33273.1| hypothetical protein RUMLAC_01028 [Ruminococcus lactaris ATCC
           29176]
          Length = 522

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 81/230 (35%), Gaps = 21/230 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP   E+  GQ    + L+  I+A +         LF G  G GKTT+A++ A+
Sbjct: 5   ALYRKFRPAEFEDVKGQEHIVTTLQNQIKANRIGHAY----LFCGTRGTGKTTVAKIFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +         P   +     ++        V+ ID      +  +  I EE+ Y   E 
Sbjct: 61  AVNCEHPVNGSP-CGECAMCKSIAAGTSMN-VIEIDAASNNGVDNIREIREEVTYRPTEG 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT V  +   +  R         
Sbjct: 119 KYKVYIIDEVHMLSIGAFNALLKTLEEPPEYVIFILATTEVHKIPITILSRCQHYDFKRI 178

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
             IE +   +Q       + V D+A   IA  + G+ R A  LL +   F
Sbjct: 179 -SIETITARMQELMDTEQIEVEDKALRYIAKAADGSMRDALSLLDQCIAF 227


>gi|160893580|ref|ZP_02074364.1| hypothetical protein CLOL250_01134 [Clostridium sp. L2-50]
 gi|156864565|gb|EDO57996.1| hypothetical protein CLOL250_01134 [Clostridium sp. L2-50]
          Length = 575

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 76/226 (33%), Gaps = 25/226 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP T EE  GQ    + LK  I             LF G  G GKT++A++ A+ +    
Sbjct: 8   RPDTFEEVKGQDHVVTTLKNQI----INNRIGHAFLFCGTRGTGKTSIAKLFAKAVNCEH 63

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRD--VLFID-----EIHRLSIIVEEILYPAMEDFQLD 135
                P      + AA     +     V+ ID      +  +  I EE+ Y   E     
Sbjct: 64  PINGSP----CNECAACRAIADGSSMNVIEIDAASNNGVDNIRQIREEVQYSPSEGKYKV 119

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             ++++   +    I ATT    +   +  R           +E
Sbjct: 120 YIIDEVHMLTQGAFNALLKTLEEPPAYVIFILATTESHKIPITISSRCQKYEFRRI-SVE 178

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
            +   +        +    +A   IA  + G+ R A  +L +   F
Sbjct: 179 TISDRLMELLGREQIEAEKKAVDYIAKAADGSMRDALSILDQCIAF 224


>gi|145550325|ref|XP_001460841.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124428672|emb|CAK93444.1| unnamed protein product [Paramecium tetraurelia]
          Length = 668

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 53/265 (20%), Positives = 99/265 (37%), Gaps = 31/265 (11%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH-------VLFVGPP 63
           ++ QE+ +I    P    +  G  E    L+  +E  K   +  D        +L VGPP
Sbjct: 225 DLIQEERNI----PTRFNDVLGIDEFKEELEEIVEFLKHPKKYTDSGAKLPKGILLVGPP 280

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIA------KAGDLAALLTNLEDR--DVLFIDEIH 115
           G GKT LA+ +A E G  F   SG           A  +  +      +   ++FIDEI 
Sbjct: 281 GTGKTLLARALAGEAGCAFFYKSGSEFDEMFVGVGASRVREIFKTARQKAPSIIFIDEID 340

Query: 116 RL--SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD- 172
            +      ++   P      ++ ++ E    +  +       +I AT    +L   L+  
Sbjct: 341 SIGGRRRAQD---PGYSRDTINQILTEMDGFKQSES----VIVIGATNFEQVLDPALKRP 393

Query: 173 -RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            RF   I +   +++  + I     +     V       +A ++ G      + +  V  
Sbjct: 394 GRFDKMIHVPLPDVKGREQIFSYYLQKIKFDVQKVLPSNLARQTSGFTGADIQNMVNVAI 453

Query: 232 FAEVAHAK-TITREIADAALLRLAI 255
              + + +   T E  + A+ R+A+
Sbjct: 454 LNAIKYDRQIATTEDFEFAIDRIAM 478


>gi|167648530|ref|YP_001686193.1| DNA polymerase III subunits gamma and tau [Caulobacter sp. K31]
 gi|167350960|gb|ABZ73695.1| DNA polymerase III, subunits gamma and tau [Caulobacter sp. K31]
          Length = 632

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 77/227 (33%), Gaps = 21/227 (9%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RPRT E+  GQ      L      A +        +  G  G+GKTT A+++AR L
Sbjct: 87  ARKYRPRTFEDLIGQEAMVRTL----ANAFSSGRIAHAFMLTGVRGVGKTTTARLLARAL 142

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYP-----AMED 131
                +   P +    D       +E R  DVL +D   R  +     L        +E 
Sbjct: 143 NYETDTVHQPSVDLTIDGRHCKAIIEGRHMDVLELDAASRTKVDEMRELLDGVRYAPVEA 202

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT +  +   +  R      L  
Sbjct: 203 RYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAKFIFATTEIRKVPVTILSRTQ-RFDLRR 261

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
            E + L     R A   G  V ++    IA  + G+ R    LL + 
Sbjct: 262 VEPDVLVKHFARIAAKEGAKVEEDGLALIARAAEGSVRDGLSLLDQA 308


>gi|307720523|ref|YP_003891663.1| DNA polymerase III, tau subunit [Sulfurimonas autotrophica DSM
           16294]
 gi|306978616|gb|ADN08651.1| DNA polymerase III, tau subunit [Sulfurimonas autotrophica DSM
           16294]
          Length = 563

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 71/214 (33%), Gaps = 42/214 (19%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVV 74
           +      RP   +E  GQ      L + +++ +     L H  LF G  G GKT+ A++ 
Sbjct: 6   EVLARKYRPSNFDELIGQETIAQTLSLALDSNR-----LSHAYLFSGLRGSGKTSTARIF 60

Query: 75  ARE------------------------LGVNFRSTSGPVIAKAGDLAALLTNLEDRD--- 107
           A+                           ++     G    K  D+  L+   + +    
Sbjct: 61  AKALICEEGMSHQPCDKCSNCVMAKENRHMDIIEMDGASSRKIDDIRDLIEQTKYKPAIA 120

Query: 108 ---VLFIDEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTR 162
              +  IDE+H L+      L   +E+    +  ++      +     LSR       + 
Sbjct: 121 RYKIFIIDEVHMLTKEAFNALLKTLEEPPEYVKFVLATTDPLKLPATILSRTQHFRFKSI 180

Query: 163 VGLLTNPLQDRFGIPIRLNFYEIED-LKTIVQRG 195
               TN + D     ++L   E E+    I+ R 
Sbjct: 181 A---TNKIVDHLAHILQLEGIEYENDALEILARS 211


>gi|308233501|ref|ZP_07664238.1| DNA polymerase III, subunits gamma and tau [Atopobium vaginae DSM
           15829]
 gi|328943419|ref|ZP_08240884.1| DNA polymerase III, gamma/tau subunit DnaX [Atopobium vaginae DSM
           15829]
 gi|327491388|gb|EGF23162.1| DNA polymerase III, gamma/tau subunit DnaX [Atopobium vaginae DSM
           15829]
          Length = 742

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 45/245 (18%), Positives = 91/245 (37%), Gaps = 22/245 (8%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           ++  +  RP   ++  GQ    S L    + A    +     LF GP G GKTT+A++ A
Sbjct: 2   ESLYTKYRPAVFQDVVGQTHVVSTL----QNAVLEHKIGHAYLFCGPRGTGKTTMARLFA 57

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL--SIIVEEIL----YPAM 129
           +   +   S    +     +    +      DV  +D   R     + EEI+    Y  +
Sbjct: 58  KA--LLCTSPQNGLPCGVCETCKNIAQGIHPDVFELDAASRTGVDNVREEIIDRVNYAPL 115

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +      ++ E             ++++   S    I  TT    +   +  R  +    
Sbjct: 116 KGAYKIYIIDEVHMLTASAFNALLKTLEEPPSHVVFILCTTEPHKILATILSRV-MRFDF 174

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           +  + +++   +Q+   L   +  DEA   I   ++G  R A   L ++  F +   +K 
Sbjct: 175 HRIKSDEMFVHLQKVCTLEHFSADDEALKLIVEHAQGGMRDALSSLEQISVFGKGVISKR 234

Query: 241 ITREI 245
           +  ++
Sbjct: 235 LVEDM 239


>gi|164426330|ref|XP_001728317.1| activator 1 37 kDa subunit [Neurospora crassa OR74A]
 gi|157071292|gb|EDO65226.1| activator 1 37 kDa subunit [Neurospora crassa OR74A]
          Length = 353

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 80/223 (35%), Gaps = 34/223 (15%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   +   RP  L++  G  E    LK+      A+   + H +  G PG+GKTT    +
Sbjct: 32  ELPWVEKYRPVFLDDVVGNTETIERLKII-----AKEGNMPHFIISGMPGIGKTTSVLCL 86

Query: 75  AR--------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIHRLSIIVEEI 124
           AR        E  +   ++   V  +    A     L      ++ +DE   ++   ++ 
Sbjct: 87  ARQLLGDAYKEAVLELNASDERVRQRIKGFAQKKVTLPPGRHKIVILDEADSMTSGAQQA 146

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           L   ME +                 N +RF    A  +   +  PLQ R  I       +
Sbjct: 147 LRRTMEIYS----------------NTTRFAF--ACNQSNKIIEPLQSRCAILRFAKLTD 188

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
            + +K ++Q   +   +  +D+    +   + G  R A   L+
Sbjct: 189 AQVVKRLLQ-IIEAEKVEYSDDGLAALVFSAEGDMRQAINNLQ 230


>gi|262370428|ref|ZP_06063754.1| DNA polymerase III [Acinetobacter johnsonii SH046]
 gi|262314770|gb|EEY95811.1| DNA polymerase III [Acinetobacter johnsonii SH046]
          Length = 698

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 81/257 (31%), Gaps = 53/257 (20%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RPR   E  GQ          + +A  R       LF G  G+GKTT+A+++A+ L
Sbjct: 6   ARKYRPRNFNELVGQNHV----SRALTSALERGRLHHAYLFTGTRGVGKTTIARILAKCL 61

Query: 79  GVNFRSTS------------------------GPVIAKAGDLAALLTNL------EDRDV 108
                 TS                             K  D   LL N+          V
Sbjct: 62  NCETGVTSTPCEVCPTCTAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKV 121

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
             IDE+H LS      L   +E+                         + ATT    L  
Sbjct: 122 YLIDEVHMLSTHSFNALLKTLEE------------------PPEHVKFLFATTDPQKLPI 163

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            +  R  +   L    ++++   +        +    +A  +IA  ++G+ R A  L  +
Sbjct: 164 TVISRC-LQFTLRPLAVDEITEHLGNILNKENIQAEQDAIWQIAESAQGSLRDALSLTDQ 222

Query: 229 VRDFAEVAHAKTITREI 245
              + + A      +E+
Sbjct: 223 AIAYGQGAIQHQDVKEM 239


>gi|225679164|gb|EEH17448.1| replication factor C subunit 3 [Paracoccidioides brasiliensis Pb03]
          Length = 391

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 77/226 (34%), Gaps = 13/226 (5%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
                   +   RP +L++ +G  +    +  FI++ +     L H+L  GPPG GKT+ 
Sbjct: 40  EAEDNLPWVEKYRPNSLDDVSGHHDIIGTINRFIDSNR-----LPHLLLYGPPGTGKTST 94

Query: 71  AQVVAR------ELGVNFRSTSGPVIAKAGDLAALLTN-LEDRDVLFIDEIHRLSIIVEE 123
              +AR       +       +         +   +      + +  +  + +    +  
Sbjct: 95  ILALARRIYGVKNMRQMVLELNASDDRGIDVVRDQIKTFASTKQIFSMAPVAKSESSLGA 154

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
                +++        +    R ++   +             L+  L  R     R +  
Sbjct: 155 FKLIILDEADAMTATAQMALRRIMEKYTANARFCIIANYTHKLSPALLSRC-TRFRFSPL 213

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           + +D++ +V +  +   + +  EA   +   S+G  R A  +L+  
Sbjct: 214 KEKDIRALVNQVIEKEQVRIQPEAIDSLVELSKGDMRRALNVLQAC 259


>gi|91201430|emb|CAJ74490.1| similar to DNA polymerase III subunit gamma/tau [Candidatus
           Kuenenia stuttgartiensis]
          Length = 558

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 49/253 (19%), Positives = 88/253 (34%), Gaps = 25/253 (9%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+T  +  GQ      L   I   +         LF GP G+GKT+ A+++++ L
Sbjct: 7   ARRYRPQTFSDIVGQAPIVKTLGNAIRTDRVAHAY----LFAGPRGVGKTSTARILSKAL 62

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHR-----LSIIVEEILYPAMEDFQ 133
                 T  P      ++   ++   D DVL ID         +  I + + +       
Sbjct: 63  NCVNGPTDTP--CNVCNICQSISEGSDIDVLEIDGASNRGIDEIRNIRQNVGFAPSRARY 120

Query: 134 LDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
              ++ E             ++++   S    I ATT    L   +Q R           
Sbjct: 121 RIYIIDEVHMLTREAFNALLKTLEEPPSHVKFIFATTAANRLPETVQSRCQ-RFDFKNIS 179

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           + D++  +    K  G  +   A   IA  ++G  R +  +L ++  F        +T  
Sbjct: 180 VNDIEKHLLEICKTEGKQIESAALHTIAKYAKGGLRDSQSVLDQLFSFC----DDNVTSA 235

Query: 245 IADAALLRLAIDK 257
             +  L  +  DK
Sbjct: 236 DVNYVLGYIDDDK 248


>gi|251772822|gb|EES53382.1| DNA polymerase III, subunits gamma and tau [Leptospirillum
           ferrodiazotrophum]
          Length = 576

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 84/229 (36%), Gaps = 25/229 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           +   L RPRT  +  GQ     +L   + +           LF G  G+GKTT+A+++A+
Sbjct: 6   SLARLYRPRTFSDLIGQEAVVRSLTRGLSSGVMTQAY----LFSGERGVGKTTVARILAK 61

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSII-----VEEILYPAM 129
            +       SGP      + ++ L   E R  DV  +D      +       E ++Y  +
Sbjct: 62  AINCQ----SGPTATPCLECSSCLEIAEGRSPDVTEMDGASHTGVDDVRTLRESLVYAPL 117

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                 +++ E             ++++        I ATT    + + +  R     R 
Sbjct: 118 TSRSRIVIIDEVHMLSTSAFNALLKTLEEPPPHVVFILATTEAHKIPDTVLSRCQ-HFRF 176

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
               +  +   +    +   +++       +A  + G+ R A  LL ++
Sbjct: 177 RLLTVSQISDRILHVCRSENISLNPTVTGMVARAAEGSLRDALSLLDQL 225


>gi|269120614|ref|YP_003308791.1| DNA polymerase III subunits gamma and tau [Sebaldella termitidis
           ATCC 33386]
 gi|268614492|gb|ACZ08860.1| DNA polymerase III, subunits gamma and tau [Sebaldella termitidis
           ATCC 33386]
          Length = 496

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/262 (17%), Positives = 86/262 (32%), Gaps = 57/262 (21%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
              RP+  EE  GQ          I  +    +     LF GP G+GKTT+A+++A+ + 
Sbjct: 7   RKYRPQNFEEIAGQGHIVK----AIRNSLKENKLSHAYLFNGPRGVGKTTIARLIAKGVN 62

Query: 80  V-------------------------NFRSTSGPVIAKAGDLAALLTNL------EDRDV 108
                                     +             ++  L   +       ++ V
Sbjct: 63  CLTNGISDHPCGTCDNCREIAAGISMDMVEIDAASNRGIDEIRELKEKINYQPVNGNKKV 122

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
             IDE+H L+      L   +E+                    S    I ATT V  + +
Sbjct: 123 YIIDEVHMLTKEAFNALLKTLEE------------------PPSHVIFILATTEVDKIPD 164

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            +  R           + D+  +++  A+   + + +E+   I  +S G+ R +  +  +
Sbjct: 165 TVISRCQ-RYDFLPLNMNDIIEMLKMVAEKENIKIDEESLKLIYRKSEGSARDSFSIFEQ 223

Query: 229 VRDFAEVAHAKTITREIADAAL 250
           V   A     + I  E    AL
Sbjct: 224 V---ASNFSGEEIDIEKTQTAL 242


>gi|160946877|ref|ZP_02094080.1| hypothetical protein PEPMIC_00838 [Parvimonas micra ATCC 33270]
 gi|158447261|gb|EDP24256.1| hypothetical protein PEPMIC_00838 [Parvimonas micra ATCC 33270]
          Length = 540

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 51/256 (19%), Positives = 87/256 (33%), Gaps = 37/256 (14%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+      GQ      LK  I     R   L H  LF G  G GKT+ A++ AR +   
Sbjct: 12  RPKDFTRVVGQAHIVEILKNQI-----RTGNLGHAYLFSGIRGTGKTSCAKIFARAVNCL 66

Query: 82  FRSTSGP----------VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
                 P          +  KA ++  +      R    ID+I  L    E+++YP    
Sbjct: 67  NPIDGNPCNECENCKMILEDKALEVVEMDAASNRR----IDDIRELK---EKVIYPPQIV 119

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             + ++        I ATT +  L + +  R         
Sbjct: 120 KYKVYIIDEAHMITNEGFNALLKILEEPPKHLIFILATTEIDKLPDTIISRCQRFEFKRI 179

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
              + ++ I         + + ++    I+  S G  R A  LL +V         + IT
Sbjct: 180 NNSDIVENI-NYVLNNLNVEIEEDGINLISELSSGAMRDALSLLDQVV----ATGKEKIT 234

Query: 243 REIADAALLRLAIDKM 258
            E  +  L  + ++ +
Sbjct: 235 IEDINECLGLVNLNML 250


>gi|326778287|ref|ZP_08237552.1| DNA polymerase III, subunits gamma and tau [Streptomyces cf.
           griseus XylebKG-1]
 gi|326658620|gb|EGE43466.1| DNA polymerase III, subunits gamma and tau [Streptomyces cf.
           griseus XylebKG-1]
          Length = 755

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 59/175 (33%), Gaps = 26/175 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP +  E  GQ      L+  +   +         LF GP G GKTT A+++AR
Sbjct: 19  ALYRRYRPESFAEVIGQEHVTDPLQQALRNNRVNHAY----LFSGPRGCGKTTSARILAR 74

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR----DVLFIDEIHRLSII------VEEILY 126
            L        GP     G+  +      +     DV+ ID      +        +    
Sbjct: 75  CLNCE----QGPTPTPCGECQSCQDLARNGPGSIDVIEIDAASHGGVDDARDLREKAFFG 130

Query: 127 PAMEDFQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           PA   +++ ++         G     + V+        I ATT    +   ++ R
Sbjct: 131 PASSRYKIYIIDEAHMVTPAGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSR 185


>gi|297538152|ref|YP_003673921.1| DNA polymerase III subunits gamma and tau [Methylotenera sp. 301]
 gi|297257499|gb|ADI29344.1| DNA polymerase III, subunits gamma and tau [Methylotenera sp. 301]
          Length = 573

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 58/319 (18%), Positives = 93/319 (29%), Gaps = 75/319 (23%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP++ E   GQ      L   +E        L H  LF G  G+GKTT+A+++A+ L   
Sbjct: 11  RPKSFETLVGQDHVVRALTNALE-----QNRLHHAYLFTGTRGVGKTTVARILAKSLNCE 65

Query: 82  F------------------------RSTSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                             +   +  LL N +         V  I
Sbjct: 66  KGITAKPCGVCDACTEIDRGRFVDLIEVDAASNTQVDAMRDLLDNAQYAPTSGRFKVYII 125

Query: 112 DEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+H LS      +   +E+    +  ++      +     LSR          G     
Sbjct: 126 DEVHMLSKSAFNAMLKTLEEPPAHVKFILATTDPQKVPVTVLSRCLQFNLRQMAGTSI-- 183

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
                          IE L+ I+        +     A   IA  + G+ R A  L    
Sbjct: 184 ---------------IEHLQNIL----GQENIPFEPTALHLIARAAAGSMRDALSL---- 220

Query: 230 RDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGL 289
            D A     +T+      A L            +D  YL  +         G   I+   
Sbjct: 221 TDQAIAYGGQTVNESEVRAMLGA----------IDQSYLYQLINALLAND-GASIIAQAK 269

Query: 290 SEPRDAIE-DLIEPYMIQQ 307
           S    ++  ++    + Q 
Sbjct: 270 SMEERSLSFEVALNDLAQL 288


>gi|226290876|gb|EEH46304.1| replication factor C subunit 3 [Paracoccidioides brasiliensis Pb18]
          Length = 395

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 77/226 (34%), Gaps = 13/226 (5%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
                   +   RP +L++ +G  +    +  FI++ +     L H+L  GPPG GKT+ 
Sbjct: 40  EAEDNLPWVEKYRPNSLDDVSGHHDIIGTINRFIDSNR-----LPHLLLYGPPGTGKTST 94

Query: 71  AQVVAR------ELGVNFRSTSGPVIAKAGDLAALLTN-LEDRDVLFIDEIHRLSIIVEE 123
              +AR       +       +         +   +      + +  +  + +    +  
Sbjct: 95  ILALARRIYGVKNMRQMVLELNASDDRGIDVVRDQIKTFASTKQIFSMAPVAKSESSLGA 154

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
                +++        +    R ++   +             L+  L  R     R +  
Sbjct: 155 FKLIILDEADAMTATAQMALRRIMEKYTANARFCIIANYTHKLSPALLSRC-TRFRFSPL 213

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           + +D++ +V +  +   + +  EA   +   S+G  R A  +L+  
Sbjct: 214 KEKDIRALVNQVIEKEQVRIQPEAIDSLVELSKGDMRRALNVLQAC 259


>gi|324511848|gb|ADY44927.1| Replication factor C subunit 5 [Ascaris suum]
          Length = 341

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 69/204 (33%), Gaps = 32/204 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP TL++     E  + L   ++        L H+LF GPPG GKT+   V AR
Sbjct: 13  PWVEKYRPATLDDLVSHEEIIATLAKLVK-----KRRLPHLLFYGPPGTGKTSAILVAAR 67

Query: 77  ELGVNFRSTSGPVIAKAGDLA-------ALLTNLEDRD------------VLFIDEIHRL 117
            +    +  S  +   A D          ++   + +             ++ +DE   +
Sbjct: 68  MMFTPKQLASMVLELNASDDRGIGIVRDQIMNFAQTKTLHVDENGKSHIKLIILDEADAM 127

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           +   +  L   +E F       E      +   LS+      +        PL++   +P
Sbjct: 128 TKDAQNALRRVIEKF------TENVRFCIICNYLSKIIPAVQSRCTRFRFAPLKEEQILP 181

Query: 178 IRLNFYEIEDLK--TIVQRGAKLT 199
              +  + E LK     +R     
Sbjct: 182 RLRHIAKSESLKLTEDGERALMKL 205


>gi|229366198|gb|ACQ58079.1| Replication factor C subunit 5 [Anoplopoma fimbria]
          Length = 335

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 74/225 (32%), Gaps = 38/225 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+ L++     +  S ++ FI       + L H+LF GPPG G+T+     A+
Sbjct: 15  PWVEKYRPQKLDDLISHKDILSTIQKFIS-----EDKLPHLLFYGPPGTGETSTILACAK 69

Query: 77  ELGVNFRSTSGPVIAKAGDLAAL-------LTNLEDRDVL-------FIDEIHRLSIIVE 122
           +L      TS  +   A D   +       L+    R +         +DE   ++   +
Sbjct: 70  QLYKEKEFTSMVLELNASDDRGIDVVRGPVLSFASTRTIFKRGFKLVILDEADHMTQDAQ 129

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             L   +E +       E               L      +  +   LQ R     R   
Sbjct: 130 NALRRVIEKY------TENT------------RLCLICNYLSKIIPALQSRC-TRFRFGP 170

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
              + +   ++   +   + +       I   S G  R +  +L+
Sbjct: 171 LSPDQMIPRLEYVVQQESIDINPGGMKAIVTLSSGDMRRSLNILQ 215


>gi|297563735|ref|YP_003682709.1| DNA polymerase III subunits gamma and tau [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296848183|gb|ADH70203.1| DNA polymerase III, subunits gamma and tau [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 732

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/239 (18%), Positives = 78/239 (32%), Gaps = 27/239 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T  E  GQ      L+  + + +         LF GP G GKTT A+++AR
Sbjct: 4   ALYRKYRPATFGEVRGQEHVTDPLRQALRSGRINHAY----LFSGPRGCGKTTSARILAR 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR----DVLFID-----EIHRLSIIVEEILYP 127
            L        GP     G   + +    D     DV+ ID      +     + E   + 
Sbjct: 60  SLNC----AEGPTPDPCGTCDSCVALAPDGGGSIDVIEIDAASHGGVDDARDLRERAFFS 115

Query: 128 AMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            +       ++ E             + V+        + ATT    +   ++ R     
Sbjct: 116 PVNSRYKIYIIDEAHMVTREGFNALLKLVEEPPPHLKFVFATTEPEKVIGTIRSR-THHY 174

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                    LK +++   K  G++    A   +     G+ R    +L ++   ++   
Sbjct: 175 PFRLIPPSTLKELMEDLLKEEGVSYDPAALPLVVRAGAGSARDTLSVLDQLIAGSDEGG 233


>gi|297569219|ref|YP_003690563.1| DNA polymerase III, subunits gamma and tau [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296925134|gb|ADH85944.1| DNA polymerase III, subunits gamma and tau [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 678

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 54/277 (19%), Positives = 89/277 (32%), Gaps = 60/277 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV-- 80
           RPRT  E  GQ      L+  +     R      +LF G  G+GKTTLA+++A+ L    
Sbjct: 11  RPRTFAEVVGQRPVVRTLQNALR----RERVAHAMLFSGVRGVGKTTLARIMAKALNCLA 66

Query: 81  -----------------------NFRSTSGPVIAKAGDLAALLTN------LEDRDVLFI 111
                                  +     G       ++  L  N           ++ I
Sbjct: 67  AEAEQRPCNQCASCLAFNAGQAVDLHEIDGASNRGIQEIRELKENIRFMPVAGKYKIVII 126

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H L+      L   +E+                    +    + ATT +  +   + 
Sbjct: 127 DEVHMLTTEAFNALLKTLEE------------------PPAHVYFMFATTELHKIPVTIL 168

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R             +L+   +R A    + + D A   I   + G+ R    LL +V  
Sbjct: 169 SRCQRHELTRV-PFAELQDFFRRVAAAEEVEIPDSALEMIVREADGSVRDGLSLLDQVFS 227

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYL 268
           F      + +  E     L    +D+  F+QL    L
Sbjct: 228 F----GGRQVADEDVRQMLGL--VDRRTFEQLARALL 258


>gi|295837600|ref|ZP_06824533.1| DNA polymerase III, subunit gamma and tau [Streptomyces sp. SPB74]
 gi|295826587|gb|EDY42974.2| DNA polymerase III, subunit gamma and tau [Streptomyces sp. SPB74]
          Length = 412

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 58/175 (33%), Gaps = 26/175 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T  E  GQ      L   +   +         LF GP G GKTT A+++AR
Sbjct: 15  ALYRRYRPETFAEVIGQEHVTDPLSQALRNNRVNHAY----LFSGPRGCGKTTSARILAR 70

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR----DVLFIDEIHRLSII------VEEILY 126
            L        GP     G+  +      +     DV+ ID      +        +    
Sbjct: 71  CLNCE----QGPTPTPCGECQSCQDLARNGPGSIDVIEIDAASHGGVDDARDLREKAFFG 126

Query: 127 PAMEDFQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           PA   +++ ++         G     + V+        I ATT    +   ++ R
Sbjct: 127 PASSRYKIYIIDEAHMVTSAGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSR 181


>gi|50513622|pdb|1SXJ|B Chain B, Crystal Structure Of The Eukaryotic Clamp Loader
           (Replication Factor C, Rfc) Bound To The Dna Sliding
           Clamp (Proliferating Cell Nuclear Antigen, Pcna)
          Length = 323

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/234 (18%), Positives = 83/234 (35%), Gaps = 38/234 (16%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           +S+ +S +   +   RP+ L +  G  E    L+       A+   + H++  G PG+GK
Sbjct: 1   MSKTLSLQLPWVEKYRPQVLSDIVGNKETIDRLQQI-----AKDGNMPHMIISGMPGIGK 55

Query: 68  TTLAQVVARE-----LGVNFRSTSGPVIAKAGDLAALLTNLEDR---------DVLFIDE 113
           TT    +A E             +         +   + +   +          ++ +DE
Sbjct: 56  TTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDE 115

Query: 114 IHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
              ++   ++ L   ME +                 N +RF    A  +   +  PLQ +
Sbjct: 116 ADSMTAGAQQALRRTMELYS----------------NSTRFAF--ACNQSNKIIEPLQSQ 157

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             I       + + LK ++Q   KL  +  T++    I   + G  R A   L+
Sbjct: 158 CAILRYSKLSDEDVLKRLLQ-IIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQ 210


>gi|229846868|ref|ZP_04466975.1| DNA polymerase III subunits gamma and tau [Haemophilus influenzae
           7P49H1]
 gi|229810357|gb|EEP46076.1| DNA polymerase III subunits gamma and tau [Haemophilus influenzae
           7P49H1]
          Length = 688

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 51/282 (18%), Positives = 88/282 (31%), Gaps = 65/282 (23%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T  +  GQ    + L     A   +   L H  LF G  G+GKT++A++ A+ L   
Sbjct: 11  RPKTFADVVGQEHIITAL-----ANGLKDNRLHHAYLFSGTRGVGKTSIARLFAKGLNCV 65

Query: 82  F------------------------RSTSGPVIAKAGDLAALLTNLEDRDVL------FI 111
                                             K  D   LL N++ + V+       I
Sbjct: 66  HGVTATPCGECENCKTIEQGNFIDLIEIDAASRTKVEDTRELLDNVQYKPVVGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSRHSFNALLKTLEE------------------PPEYVKFLLATTDPQKLPVTIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L   +   +   +        +   + A  ++A  ++G+ R +  L     D
Sbjct: 168 SRC-LQFHLKALDETQISQHLAHILTQENIPFEEPALVKLAKAAQGSIRDSLSL----TD 222

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIAR 273
            A     + +T  +    L  L       D   +  L  + +
Sbjct: 223 QAIAMGDRQVTNNVVSNMLGLLD------DNYSVDILYALHQ 258


>gi|126739558|ref|ZP_01755250.1| DNA polymerase III subunits gamma and tau [Roseobacter sp.
           SK209-2-6]
 gi|126719204|gb|EBA15914.1| DNA polymerase III subunits gamma and tau [Roseobacter sp.
           SK209-2-6]
          Length = 603

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 61/314 (19%), Positives = 110/314 (35%), Gaps = 31/314 (9%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPG 64
           +       +Q        RP T  +  GQ      LK   E  +         +  G  G
Sbjct: 3   DSTSDTGQTQYQVLARKYRPETFADLVGQDAMVRTLKNAFETNRIAQA----FIMTGIRG 58

Query: 65  LGKTTLAQVVARELGVNFRSTSG-PVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSI-- 119
            GKTT A+++A+ +       +G P     G        +E R  DV+ +D   R  +  
Sbjct: 59  TGKTTTARIIAKGMNCIGPDGTGQPTTEPCGTCEHCTAIMEGRHVDVMEMDAASRTGVGD 118

Query: 120 ---IVEEILYPAMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLT 167
              I++ + Y A        ++ E             ++++   +    I ATT +  + 
Sbjct: 119 IREIIDSVQYRAASARYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVP 178

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             +  R      L   E E +  ++++ A   G  + ++A   I   + G+ R A  LL 
Sbjct: 179 VTVLSRCQ-RFDLRRIEPEVMIALMRKIATAEGAEIHEDALALITRAAEGSARDATSLL- 236

Query: 228 RVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISA 287
              D A    A   T +   A L      ++  D +D     ++  +  G    +    A
Sbjct: 237 ---DQAISHGAGETTADQVRAMLGLADRGRV-LDLID----MILRGDAAGALSELGAQYA 288

Query: 288 GLSEPRDAIEDLIE 301
             ++P   + DL E
Sbjct: 289 EGADPLAVLRDLAE 302


>gi|62261627|gb|AAX78003.1| unknown protein [synthetic construct]
          Length = 581

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 79/249 (31%), Gaps = 57/249 (22%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP++  E  GQ  A ++L   +E  K         LF G  G+GKTTL +++A+
Sbjct: 31  ALARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAY----LFTGTRGVGKTTLGRLLAK 86

Query: 77  ELGVNF------------------------RSTSGPVIAKAGDLAALLTNLE------DR 106
            L                                        +   +L N++        
Sbjct: 87  CLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAASRTGVEETKEILYNIQYMPSQGRY 146

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164
            V  IDE+H LS      L   +E+    +  ++      +     LSR   +       
Sbjct: 147 KVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQ 206

Query: 165 LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGR 224
                              +I+D   I+        +   +++   IA  ++G+ R A  
Sbjct: 207 A------------------DIKDQLKII---LAKENINSDEQSLEYIAYHAKGSLRDALS 245

Query: 225 LLRRVRDFA 233
           LL +   F 
Sbjct: 246 LLDQAISFC 254


>gi|291438660|ref|ZP_06578050.1| DNA polymerase III, subunits gamma and tau [Streptomyces ghanaensis
           ATCC 14672]
 gi|291341555|gb|EFE68511.1| DNA polymerase III, subunits gamma and tau [Streptomyces ghanaensis
           ATCC 14672]
          Length = 440

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 58/173 (33%), Gaps = 22/173 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP +  E  GQ      L+  +   +         LF GP G GKTT A+++AR
Sbjct: 15  ALYRRYRPESFAEVIGQEHVTDPLQQALRNNRVNHAY----LFSGPRGCGKTTSARILAR 70

Query: 77  ELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFIDEIHRLSII------VEEILYPA 128
            L      T  P        DLA         DV+ ID      +        +    PA
Sbjct: 71  CLNCEEGPTPTPCGTCQSCQDLA--RNGPGSIDVIEIDAASHGGVDDARDLREKAFFGPA 128

Query: 129 MEDFQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
              +++ ++         G     + V+        I ATT    +   ++ R
Sbjct: 129 QSRYKIYIIDEAHMVTSAGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSR 181


>gi|300708919|ref|XP_002996630.1| hypothetical protein NCER_100257 [Nosema ceranae BRL01]
 gi|239605946|gb|EEQ82959.1| hypothetical protein NCER_100257 [Nosema ceranae BRL01]
          Length = 293

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 64/187 (34%), Gaps = 10/187 (5%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
                RP+ +  F       + L        +      ++L  GPPG GKTT A ++A  
Sbjct: 5   WTEKYRPQNISTFESLPHIKNFLN------MSSPNDFPNLLLYGPPGTGKTTFAHLLAST 58

Query: 78  LGVNFRSTSGPVIAKAGD-LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
             +   ++    I    D + +    L+    + +DE   L+   +  L   +ED     
Sbjct: 59  NKLELNASDERGINVIRDKIKSYSQTLKKNKTIILDECENLTEDAQHCLRRIIEDSVNTR 118

Query: 137 MV-GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK--TIVQ 193
            +      ++ +    SR   +    R G   + +     +    +FY+    K    ++
Sbjct: 119 FIFTTNYLSKVISPLKSRLVKLKFEIRFGNTLSKIGKAENLTYDEDFYKKLFYKCNCDLR 178

Query: 194 RGAKLTG 200
           R   +  
Sbjct: 179 RSINVLQ 185


>gi|210616982|ref|ZP_03291317.1| hypothetical protein CLONEX_03539 [Clostridium nexile DSM 1787]
 gi|210149505|gb|EEA80514.1| hypothetical protein CLONEX_03539 [Clostridium nexile DSM 1787]
          Length = 519

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 81/230 (35%), Gaps = 21/230 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP   E+  GQ      L+  I+A +         LF G  G GKT++A++ A+
Sbjct: 5   ALYRKFRPGEFEDVKGQDHISKTLQNQIKADRIGHAY----LFCGTRGTGKTSVAKIFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +         P      D    +++    +V+ ID      +  +  I EE+ Y   E 
Sbjct: 61  AVNCEHPVNGSP--CGVCDSCKAISSGTSMNVIEIDAASNNGVDNIREIREEVAYRPTEG 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT    +   +  R         
Sbjct: 119 KYKVYIIDEVHMLSIGAFNALLKTLEEPPEYVIFILATTEAHKIPITILSRCQRYDFKRI 178

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
             I+ +   +    +   + V ++A   +A  + G+ R A  +L +   F
Sbjct: 179 -TIDTIAARLADLMQKENIEVEEKAIRYVAKAADGSMRDALSILDQCIAF 227


>gi|119713124|gb|ABL97193.1| DNA polymerase III subunits gamma/tau [uncultured marine bacterium
           EB0_49D07]
          Length = 539

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/264 (18%), Positives = 83/264 (31%), Gaps = 59/264 (22%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP +  E  GQ      L+  I   K         +F G  G+GKTT+A+V ++ L
Sbjct: 7   ARKYRPSSFSEVVGQEHVLKALENSISQNKLHQAY----IFSGTRGVGKTTIARVFSKCL 62

Query: 79  GV--------------------------NFRSTSGPVIAKAGDLAALLTNLEDRD----- 107
                                        F            D+  LL +++ +      
Sbjct: 63  NCMQADSPQVISCDKCSACEEIKIGRHMEFLEVDAASRTGVDDMRELLDSVQYKPANARF 122

Query: 108 -VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
            +  IDE+H LS      L   +E+                         + ATT V  +
Sbjct: 123 KIYLIDEVHMLSKSSFNALLKTLEE------------------PPPHVMFLMATTEVEKV 164

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
              +  R  + + L       ++  ++    L  +   +E+   IA  ++G+ R    LL
Sbjct: 165 PKTVLSRC-LQLNLKVIPEAKIQLHLKSLLDLESIEYDEESIALIADSAQGSVRDGLTLL 223

Query: 227 RRVRDFAEVAHAKTITREIADAAL 250
               D A      ++  +   A L
Sbjct: 224 ----DQAIAHGNGSLNADDVKALL 243


>gi|325204430|gb|ADY99883.1| DNA polymerase III, subunits gamma and tau [Neisseria meningitidis
           M01-240355]
          Length = 706

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 55/176 (31%), Gaps = 38/176 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T  +  GQ      L+  ++  +     L H  L  G  G+GKTT+A+++A+ L   
Sbjct: 11  RPKTFSDLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCE 65

Query: 82  FRS------------------------TSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                                ++  +L N +         V  I
Sbjct: 66  NAQHGEPCGVCESCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYII 125

Query: 112 DEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
           DE+H LS      +   +E+    +  ++      +     LSR            
Sbjct: 126 DEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQ 181


>gi|312142719|ref|YP_003994165.1| DNA polymerase III, subunits gamma and tau [Halanaerobium sp.
           'sapolanicus']
 gi|311903370|gb|ADQ13811.1| DNA polymerase III, subunits gamma and tau [Halanaerobium sp.
           'sapolanicus']
          Length = 602

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 60/307 (19%), Positives = 110/307 (35%), Gaps = 35/307 (11%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
              RP    +  GQ      LK  ++  +         LF GP G GKT+ A+V A+ L 
Sbjct: 8   RKYRPEDFTDLIGQDHVVQTLKNALKNDRVAHAY----LFAGPRGTGKTSTAKVFAKALN 63

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEE-ILYPAMEDFQ 133
               +       +      + ++    DV+ ID      I  +  + E+   YP    ++
Sbjct: 64  CADPAADLEPCGECNSCQRI-SSGSSLDVIEIDAASNRGIDEIRELREKVKFYPGEGQYK 122

Query: 134 LDL-----MVGEGPSARSVKINLSR---FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           + +     M+  G     +K           I ATT    +   +  R           +
Sbjct: 123 VYIIDEVHMLTTGAFNALLKTLEEPPDSVVFILATTEPHKVITTIMSRCQ-RFDFTLLSL 181

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
            D+K  ++  A+  G  +   A   +A  +RG  R    LL +   F+       +  E 
Sbjct: 182 GDIKMRLKYIAEQEGYEIDAAALDILARSARGGMRDGISLLDQAISFS----DGQLAAEE 237

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGI--ETISAGLSEPRDAIEDLI--- 300
               L R+  DK+        +L  +++N     + +  + + AGL   R + E +    
Sbjct: 238 IARMLGRVNKDKL------KEFLLYLSKNQSQKALQLLDKQLEAGLGIERFSDELVAYCR 291

Query: 301 EPYMIQQ 307
           E  +I++
Sbjct: 292 ELLLIKE 298


>gi|296817467|ref|XP_002849070.1| replication factor C subunit 3 [Arthroderma otae CBS 113480]
 gi|238839523|gb|EEQ29185.1| replication factor C subunit 3 [Arthroderma otae CBS 113480]
          Length = 397

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 60/187 (32%), Gaps = 30/187 (16%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
                   +   RP TL++ +G  +  + +  F+E+ +     L H+L  GPPG GKT+ 
Sbjct: 40  EAGDNLPWVEKYRPDTLDDVSGHQDIIATINRFVESNR-----LPHLLLYGPPGTGKTST 94

Query: 71  AQVVAR------ELGVNFRSTSGPVIAKAGDLAALLT-----------------NLEDRD 107
              +AR       +       +         +   +                   L    
Sbjct: 95  ILALARRIYGSKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSTAPSSGSGLGAFK 154

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLD--LMVGEGPSARSVKINLSRFTLIAATTRVGL 165
           ++ +DE   ++   +  L   ME +  +    +    + +     LSR T    +     
Sbjct: 155 LIILDEADAMTSAAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEQ 214

Query: 166 LTNPLQD 172
               L D
Sbjct: 215 DIRKLVD 221


>gi|254172616|ref|ZP_04879291.1| AAA family ATPase, CDC48 subfamily [Thermococcus sp. AM4]
 gi|214033545|gb|EEB74372.1| AAA family ATPase, CDC48 subfamily [Thermococcus sp. AM4]
          Length = 796

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 58/268 (21%), Positives = 97/268 (36%), Gaps = 32/268 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
           T E+  G  +    ++  IE      E            VL  GPPG GKT LA+ VA E
Sbjct: 180 TYEDIGGLKDVIQKVREMIELPLKHPEIFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANE 239

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM 129
              +F + +GP I           L  +    E+    ++FIDEI  ++   EE      
Sbjct: 240 ANAHFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKREE-----T 294

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                  +V +  +      +  +  +I AT R   +   L+   RF   + +   + + 
Sbjct: 295 HGEVEKRVVSQLLTLMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDRELEVGVPDKQG 354

Query: 188 LKTIVQRGAKLTGL--AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
            K I+Q   +   +          EI  + RG  R      R V D A     K    E 
Sbjct: 355 RKEILQIHTRGMPIEPEFRRSKVLEILEKLRGDERF-----RDVIDRAIEKVEKAKDEEE 409

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIAR 273
              AL    +D+  ++++  + +  +  
Sbjct: 410 IKKALK--ELDERLYEEIRAKLIDALLE 435



 Score = 53.2 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 46/209 (22%), Positives = 76/209 (36%), Gaps = 24/209 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVARE 77
             E+  G  +    L+  +E      EA           +L  GPPG GKT LA+ VA E
Sbjct: 515 RWEDIGGLEDVKQELREAVEWPLKYPEAFMGLGITPPKGILLYGPPGTGKTLLAKAVANE 574

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAM 129
              NF +  GP +          ++  +          V+FIDEI  ++      +    
Sbjct: 575 SEANFIAIKGPEVLSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRGTDV---- 630

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            +   D ++ +  +        S   +I AT R  ++   L    RF   I +   + + 
Sbjct: 631 -NRVTDRLINQLLTEMDGIQENSGVVVIGATNRPDIIDPALLRPGRFDRLILVPAPDEKA 689

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSR 216
              I +   +   LA  D    E+A R+ 
Sbjct: 690 RLEIFKVHTRKVPLA-EDVNLEELAKRTE 717


>gi|182437651|ref|YP_001825370.1| DNA polymerase III subunits gamma and tau [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|178466167|dbj|BAG20687.1| putative DNA polymerase III gamma subunit [Streptomyces griseus
           subsp. griseus NBRC 13350]
          Length = 748

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 59/175 (33%), Gaps = 26/175 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP +  E  GQ      L+  +   +         LF GP G GKTT A+++AR
Sbjct: 5   ALYRRYRPESFAEVIGQEHVTDPLQQALRNNRVNHAY----LFSGPRGCGKTTSARILAR 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR----DVLFIDEIHRLSII------VEEILY 126
            L        GP     G+  +      +     DV+ ID      +        +    
Sbjct: 61  CLNCE----QGPTPTPCGECQSCQDLARNGPGSIDVIEIDAASHGGVDDARDLREKAFFG 116

Query: 127 PAMEDFQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           PA   +++ ++         G     + V+        I ATT    +   ++ R
Sbjct: 117 PASSRYKIYIIDEAHMVTPAGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSR 171


>gi|157150866|ref|YP_001450197.1| DNA polymerase III subunits gamma and tau [Streptococcus gordonii
           str. Challis substr. CH1]
 gi|262282525|ref|ZP_06060293.1| DNA-directed DNA polymerase III [Streptococcus sp. 2_1_36FAA]
 gi|157075660|gb|ABV10343.1| DNA-directed DNA polymerase III [Streptococcus gordonii str.
           Challis substr. CH1]
 gi|262261816|gb|EEY80514.1| DNA-directed DNA polymerase III [Streptococcus sp. 2_1_36FAA]
          Length = 556

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 46/270 (17%), Positives = 80/270 (29%), Gaps = 53/270 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     R +T  +  GQ    + L+  +E  K         LF GP G GKT++A++ A+
Sbjct: 4   ALYRKYRSQTFGQLVGQQVVATTLRQAVEQGKISHAY----LFSGPRGTGKTSVAKIFAK 59

Query: 77  ELGVNFR------------------------STSGPVIAKAGDLAALLTN------LEDR 106
            +    +                                   ++  +         +   
Sbjct: 60  AMNCPNQKDGEPCNDCYICKAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSMAKH 119

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
            V  IDE+H LS      L   +E+                         I ATT +  +
Sbjct: 120 KVYIIDEVHMLSTGAFNALLKTLEEPT------------------KNVVFILATTELHKI 161

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
              +  R       +    + +  I +      G+    E    IA R+ G  R A  +L
Sbjct: 162 PATILSRVQRFEFKSIKTQDIIAHI-EWILDQEGIDFEQEGVQIIARRAEGGMRDALSIL 220

Query: 227 RRVRDFAEVAHAKTITREIADAALLRLAID 256
            +     +     T   E    ++   A+D
Sbjct: 221 DQALSLTQENRLTTDIAEEITGSISLGALD 250


>gi|291237115|ref|XP_002738484.1| PREDICTED: replication factor C (activator 1) 2-like [Saccoglossus
           kowalevskii]
          Length = 320

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 84/247 (34%), Gaps = 39/247 (15%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR-- 76
           +   RP+ L E  G  +  S L VF     A+   + +++  GPPG+GKTT    +AR  
Sbjct: 8   VEKYRPQVLSEVVGNEDTVSRLAVF-----AKEGNVPNIIIAGPPGIGKTTSILCLARCL 62

Query: 77  ----------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIHRLSIIVEEI 124
                     EL  +       V  K    A     L      ++ +DE   ++   ++ 
Sbjct: 63  LGTAFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQA 122

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           L   ME +                   +RF L   T+    +  P+Q R  +       +
Sbjct: 123 LRRTMEIYSKT----------------TRFALACNTS--DKIIEPIQSRCAVLRYSKLSD 164

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD-FAEVAHAKTITR 243
            + LK +++   +   +   D     I   S+G  R A   L+     F +V        
Sbjct: 165 AQVLKRLLEISERE-NVTYNDSGLEAIIFTSQGDMRQALNNLQSTWQGFGDVTGENVFKV 223

Query: 244 EIADAAL 250
                 L
Sbjct: 224 CDEPHPL 230


>gi|260435304|ref|ZP_05789274.1| DNA polymerase III, tau subunit [Synechococcus sp. WH 8109]
 gi|260413178|gb|EEX06474.1| DNA polymerase III, tau subunit [Synechococcus sp. WH 8109]
          Length = 626

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 81/221 (36%), Gaps = 19/221 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  ++  GQ    + L   + + +         LF GP G GKT+ A+++AR L    
Sbjct: 13  RPQRFDQLVGQEAIAATLGHALTSNRIA----PAYLFSGPRGTGKTSSARILARSLNCLN 68

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P      +L   +      DV+ ID      +  +  ++E   +  ++      +
Sbjct: 69  SEGPTPEPCGTCELCTTIAAGTALDVIEIDAASNTGVDNIRELIERSRFAPVQARWKVYV 128

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           V E             ++++    +   + ATT    +   +  R           +  L
Sbjct: 129 VDECHMLSTAAFNALLKTLEEPPPQVVFVLATTDPQRVLPTILSRCQ-RFDFRRIPLNAL 187

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
              +   A+   + +  EA   +A RS+G  R A  LL ++
Sbjct: 188 NKHLSWIAEQEAIEIKPEAIHVVAQRSQGGLRDAESLLDQL 228


>gi|255931513|ref|XP_002557313.1| Pc12g04440 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211581932|emb|CAP80071.1| Pc12g04440 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 352

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 76/223 (34%), Gaps = 20/223 (8%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
             V  E   +   RP  L++  G  E    LK+      A+   + HV+  G PG+GKTT
Sbjct: 22  AAVDYELPWVEKYRPIFLDDIVGNTETVERLKII-----AKDGNMPHVIISGMPGIGKTT 76

Query: 70  LAQVVAR-----ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
               +AR              +         +   +     + V      H+L I+ E  
Sbjct: 77  SVLCLARQLLGDAYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPQGRHKLVILDEAD 136

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
              A     L          R+++I  S      A  +   +  PLQ R  I       +
Sbjct: 137 SMTAGAQQALR---------RTMEIYSSTTRFAFACNQSNKIIEPLQSRCAILRYARLTD 187

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
            + +K ++Q   +   +  +++    +   + G  R A   L+
Sbjct: 188 AQVVKRLMQ-ICEAEKVQHSEDGIAALVFSAEGDMRQAINNLQ 229


>gi|315049065|ref|XP_003173907.1| replication factor C protein subunit 3 [Arthroderma gypseum CBS
           118893]
 gi|311341874|gb|EFR01077.1| replication factor C protein subunit 3 [Arthroderma gypseum CBS
           118893]
          Length = 397

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 60/187 (32%), Gaps = 30/187 (16%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
                   +   RP TL++ +G  +  + +  F+E+ +     L H+L  GPPG GKT+ 
Sbjct: 40  EAGDNLPWVEKYRPDTLDDVSGHQDIIATINRFVESNR-----LPHLLLYGPPGTGKTST 94

Query: 71  AQVVAR------ELGVNFRSTSGPVIAKAGDLAALLT-----------------NLEDRD 107
              +AR       +       +         +   +                   L    
Sbjct: 95  ILALARRIYGSKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSTAPSSGSGLGAFK 154

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLD--LMVGEGPSARSVKINLSRFTLIAATTRVGL 165
           ++ +DE   ++   +  L   ME +  +    +    + +     LSR T    +     
Sbjct: 155 LIILDEADAMTSAAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEQ 214

Query: 166 LTNPLQD 172
               L D
Sbjct: 215 DIKRLVD 221


>gi|50290299|ref|XP_447581.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49526891|emb|CAG60518.1| unnamed protein product [Candida glabrata]
          Length = 322

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/247 (17%), Positives = 80/247 (32%), Gaps = 39/247 (15%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
             ++ E   +   RP  L++  G  E    L+       A    + H++  G PG+GKTT
Sbjct: 4   ATLTLELPWVEKYRPHLLKDIVGNEETVERLQQI-----AADGNMPHMIISGLPGIGKTT 58

Query: 70  LAQVVAREL-----GVNFRSTSGPVIAKAGDLAALLTNLEDR---------DVLFIDEIH 115
               +A E+            +         +   + +   +          ++ +DE  
Sbjct: 59  SIHCLAHEMLGESYSQAVLELNASDDRGIDVVRNQIKHFAQKKCHLPPGKHKIIILDEAD 118

Query: 116 RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
            ++   ++ L   ME +                 N +RF    A  +   +  PLQ R  
Sbjct: 119 SMTAGAQQALRRTMELYS----------------NSTRFAF--ACNQSNKIIEPLQSRCA 160

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA-GRLLRRVRDFAE 234
           I       + + LK +++   K   +  T++    I   + G  R A   L   V     
Sbjct: 161 ILRYSKLSDEQVLKRLLE-IIKAEDVQYTNDGLEAIIFTAEGDMRQAINNLQSTVAGHGL 219

Query: 235 VAHAKTI 241
           V      
Sbjct: 220 VNGENVF 226


>gi|118578743|ref|YP_899993.1| DNA polymerase III subunits gamma/tau [Pelobacter propionicus DSM
           2379]
 gi|118501453|gb|ABK97935.1| DNA polymerase III, tau subunit [Pelobacter propionicus DSM 2379]
          Length = 569

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/237 (20%), Positives = 84/237 (35%), Gaps = 27/237 (11%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
            N +  +      RP+TL E TGQ      L+  I++ +         LF G  G+GKT+
Sbjct: 2   SNGTHYEVLARKYRPQTLSELTGQEHVSRTLQNAIDSGRVAHA----FLFSGARGVGKTS 57

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL---- 125
            A+++A+ L      ++ P       L   +T     DV  ID      +     L    
Sbjct: 58  TARILAKALNCERGVSTEPCNTCP--LCIEITKGTSTDVFEIDGASNTGVDDIRELRDNA 115

Query: 126 --YPAMEDFQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
              P+   +++ ++               ++++        I ATT    L   +  R  
Sbjct: 116 KYLPSHSRYKIFIIDEVHMLSTNAFNALLKTLEEPPEHVKFIFATTEPHKLPITILSRCQ 175

Query: 176 IPIRLNFYEIEDLKTIVQR---GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
                       L  I+ R    A   G+++ D A   IA +  G+ R +     +V
Sbjct: 176 RFDFKRI----PLAKIIGRLRQIADAEGISINDSALALIARKGDGSMRDSLTAFDQV 228


>gi|269859412|ref|XP_002649431.1| ATPase of the AAA+ class [Enterocytozoon bieneusi H348]
 gi|220067194|gb|EED44661.1| ATPase of the AAA+ class [Enterocytozoon bieneusi H348]
          Length = 778

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 55/256 (21%), Positives = 92/256 (35%), Gaps = 27/256 (10%)

Query: 28  EEFTGQVEACSNLKVFI--------EAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
            +  G     + L+  +        +  K        VL  GPPG GKT LA+ VA E  
Sbjct: 485 SDIGGLEHVKAELRETVMYPVNHPEKFLKFGQNPSKGVLLYGPPGCGKTLLAKAVATECK 544

Query: 80  VNFRSTSGPVI--AKAGDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAMED 131
            NF S  GP +     GD  + +  L D+       VLF DEI  +       ++ + + 
Sbjct: 545 ANFISIKGPELLSKWVGDSESNVRELFDKARGSAPCVLFFDEIDSVGKSR---MHASNDG 601

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
              D M+ +  +            ++ AT R GLL + L  R G   +L +  + DLK+ 
Sbjct: 602 GTTDRMLNQILTEMDGMNQKKNVFVMGATNRPGLLDSALM-RPGRLDQLVYIPLPDLKSR 660

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           +    K+    ++     +         R  G       D  E+             A+ 
Sbjct: 661 I----KILETKLSKTPLSKDVSIENIAKRTEGM---SGADLTEICQRAAKLAIRDSIAME 713

Query: 252 RLAIDKMGFDQLDLRY 267
                  G +++ ++Y
Sbjct: 714 MENGQDSGVNEISMKY 729



 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 58/169 (34%), Gaps = 28/169 (16%)

Query: 29  EFTGQVEACSNLKVFIEAAKARAEALDH--------------VLFVGPPGLGKTTLAQVV 74
           +  G  +     +   +  +     L H              +L  GPPG GKT +A+ +
Sbjct: 207 DVIGFDDIGGCRRQLAQIRECVELPLKHPELFARIGIRPPRGILLHGPPGTGKTQIARAI 266

Query: 75  ARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILY 126
           A E+G      +GP I          +L         +   ++F+DEI  ++   E+   
Sbjct: 267 ANEIGAYLLIINGPEIMSKMSGESESNLRKAFEEANKKQPSIIFMDEIDSIAPNREKSTQ 326

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
              +     L+              S   ++ AT R   +   L+ RFG
Sbjct: 327 ETEKRIVSQLLT-----LMDGMNERSNVIVLGATNRPNAIDPALR-RFG 369


>gi|212637866|ref|YP_002314386.1| DNA polymerase III subunits gamma and tau [Anoxybacillus
           flavithermus WK1]
 gi|212559346|gb|ACJ32401.1| DNA polymerase III tau subunit [Anoxybacillus flavithermus WK1]
          Length = 559

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 46/248 (18%), Positives = 82/248 (33%), Gaps = 53/248 (21%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RP++ ++  GQ      L    + A  + +     LF GP G GKT++A++ A+
Sbjct: 5   ALYRVFRPQSFKDVVGQEHVTKTL----QNALLQQKISHAYLFSGPRGTGKTSIAKIFAK 60

Query: 77  ELGVNFR------------------------STSGPVIAKAGDLAALLTNLE------DR 106
            +    R                                   ++  +   ++        
Sbjct: 61  AVNCEHRPTAEPCNECPTCLGIMNGSISDVLEIDAASNNGVDEIRDIRDKVKFAPTSAPY 120

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
            V  IDE+H LSI     L   +E+                         I ATT    +
Sbjct: 121 KVYIIDEVHMLSIGAFNALLKTLEE------------------PPKHVIFILATTEPHKI 162

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
              +  R          E++ + + ++      G+ V +EA   IA  + G  R A  LL
Sbjct: 163 PLTIVSRCQ-RFDFRRIELKSIVSRLKTVVTEEGIDVEEEALFAIARAADGGMRDALSLL 221

Query: 227 RRVRDFAE 234
            +   F++
Sbjct: 222 DQAISFSD 229


>gi|66816709|ref|XP_642364.1| AAA ATPase domain-containing protein [Dictyostelium discoideum AX4]
 gi|60470410|gb|EAL68390.1| AAA ATPase domain-containing protein [Dictyostelium discoideum AX4]
          Length = 886

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/204 (21%), Positives = 74/204 (36%), Gaps = 30/204 (14%)

Query: 20  SLLR------PRTL-EEFTGQVEACSNLKVFIE--------AAKARAEALDHVLFVGPPG 64
           S +R      P+    +  GQ      LK  IE          +   +    +L  GPPG
Sbjct: 607 SSMREVVVEIPKVFWGDIGGQEHIKQKLKEAIEWPLKYPQSFIRMGIKPPKGILLYGPPG 666

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHR 116
             KT LA+ +A E G+NF +  GP +           +  +          +LF DEI  
Sbjct: 667 CSKTLLAKALATESGLNFIAVKGPELLSKWVGESERAVRDIFKKARQNSPSILFFDEIDG 726

Query: 117 LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RF 174
           L+I              ++ +V +  +       L+  T+I AT R  ++   +    R 
Sbjct: 727 LAISR-----SGEGSGAVERVVSQLLTEMDGIQPLTNVTIIGATNRPDIIDKAILRAGRI 781

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKL 198
              + ++  +++  K I     K 
Sbjct: 782 DRILYISPPDLDARKEIFNIHLKK 805



 Score = 49.3 bits (116), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 8/81 (9%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLED 105
           +    +L  GPPG GKT LA++VA +      + +G  I           L  +  +   
Sbjct: 344 KPPKGILLYGPPGTGKTLLARIVATQTNATLFTINGADILDKFYGMTEKTLQKIFKDAAQ 403

Query: 106 R--DVLFIDEIHRLSIIVEEI 124
           +   ++FIDE+  L    E+ 
Sbjct: 404 KSPSIIFIDELDALCPKREDN 424


>gi|294813917|ref|ZP_06772560.1| DNA polymerase III subunits gamma and tau [Streptomyces
           clavuligerus ATCC 27064]
 gi|294326516|gb|EFG08159.1| DNA polymerase III subunits gamma and tau [Streptomyces
           clavuligerus ATCC 27064]
          Length = 481

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/239 (17%), Positives = 75/239 (31%), Gaps = 27/239 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP +  E  GQ      L+  +   +         LF GP G GKTT A+++AR
Sbjct: 45  ALYRRYRPESFAEVIGQEHVTDPLQQALRNNRVNHAY----LFSGPRGCGKTTSARILAR 100

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR----DVLFIDEIHRLSII------VEEILY 126
            L        GP     G+  +      +     DV+ ID      +        +    
Sbjct: 101 CLNCE----QGPTPTPCGECLSCRDLARNGPGSIDVIEIDAASHGGVDDARELREKAFFG 156

Query: 127 PAMEDFQLDLMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
           PA   +++ ++         G     + V+        I ATT    +   ++ R     
Sbjct: 157 PASSRYKIYIIDEAHMVTPQGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSR-THHY 215

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                    L+  +        + V D     +     G+ R +  ++ ++   A    
Sbjct: 216 PFRLVPPSTLREYLGEVCGHEKIPVADGVLPLVVRAGAGSVRDSMSVMDQLLAGATDEG 274


>gi|77464283|ref|YP_353787.1| DNA polymerase III subunits gamma and tau [Rhodobacter sphaeroides
           2.4.1]
 gi|77388701|gb|ABA79886.1| DNA polymerase III tau and gamma subunits [Rhodobacter sphaeroides
           2.4.1]
          Length = 582

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 57/266 (21%), Positives = 90/266 (33%), Gaps = 27/266 (10%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+T  +  GQ      LK    A +         +  G  G+GKTT A+++A+ L
Sbjct: 13  ARKYRPQTFADLIGQDAMVRTLKNAFAADRIAHA----FVMTGVRGVGKTTTARIIAKGL 68

Query: 79  GV-NFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEIL-----YPAME 130
                  T GP     G         E R  DV+ +D   R  +     +     Y A  
Sbjct: 69  NCVGPDGTGGPTTEPCGQCEPCRAISEGRHVDVMEMDAASRTGVGDIREIIDSVHYRAAS 128

Query: 131 DFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
                 ++ E             ++++   +    I ATT +  +   +  R      L 
Sbjct: 129 ARYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLSRCQ-RFDLK 187

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
             E E +   + R A   G  +T +A   I   + G+ R A  L+    D A    A   
Sbjct: 188 RIEPEVMMAHLSRVAGKEGAELTRDALALITRAAEGSVRDAMSLM----DQAIAHGAGET 243

Query: 242 TREIADAALLRLAIDKMGFDQLDLRY 267
           T +   A L      ++  D  DL  
Sbjct: 244 TADQVRAMLGLADRGRV-LDLFDLVM 268


>gi|254453888|ref|ZP_05067325.1| DNA polymerase III, gamma and tau subunit [Octadecabacter
           antarcticus 238]
 gi|198268294|gb|EDY92564.1| DNA polymerase III, gamma and tau subunit [Octadecabacter
           antarcticus 238]
          Length = 586

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 55/261 (21%), Positives = 92/261 (35%), Gaps = 26/261 (9%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           +   +  +        RP T  +  GQ      LK    A +         +  G  G G
Sbjct: 1   MTESDTPKYQVLARKYRPETFADLVGQDAMVRTLKNAFAANRIAQA----FIMTGIRGTG 56

Query: 67  KTTLAQVVARELGVNFRSTS-GPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSI---- 119
           KTT A+++A+ +         GP     G     +  +E R  DV+ +D   R  +    
Sbjct: 57  KTTTARIIAKGMNCIGIDGQGGPTTEPCGKCENCVAIMEGRHVDVMEMDAASRTGVGDIR 116

Query: 120 -IVEEILYPAMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNP 169
            I+E + Y A        ++ E             ++++        I ATT +  +   
Sbjct: 117 EIIESVHYRAASARYKVYIIDEVHMLSVNAFNALLKTLEEPPEHVKFIFATTEIRKVPVT 176

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           +  R      L   E ED   ++++ A   G  +TD+A   I   + G+ R A  LL   
Sbjct: 177 VLSRCQ-RFDLRRIEPEDQIGLLRKIATAEGAEITDDALALITRAAEGSARDAQSLL--- 232

Query: 230 RDFAEVAHAKTITREIADAAL 250
            D A    A   + +   A L
Sbjct: 233 -DQAISHGAGETSADQVRAML 252


>gi|237733438|ref|ZP_04563919.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|229383473|gb|EEO33564.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 640

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/284 (16%), Positives = 101/284 (35%), Gaps = 25/284 (8%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     RP+T  E  GQ    + LK  I+  +     + H  LF GP G GKTT+A+++A
Sbjct: 5   ALYRSYRPQTFGEVAGQEHIVTTLKNAIKENR-----ISHAYLFAGPRGTGKTTVAKLLA 59

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAME 130
           + L     +   P   +  +  A+ T  E  DV+ ID      +  +  +++++ Y  + 
Sbjct: 60  KALNC---TGENPPCDQCPNCKAI-TVGEHPDVIEIDAASNNGVDEVRDLIDKVKYAPIN 115

Query: 131 DFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
                 ++ E             ++++   +    + ATT    +   +  R        
Sbjct: 116 GKYKVYIIDEVHMMSTGAFNALLKTLEEPPAHIVFVLATTEPHKILPTIISRCQRFDFKK 175

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
               + +   ++   K         A   +A  + G  R A  +L +   +      +++
Sbjct: 176 VENHDIISR-LEYVLKSENKKYELPALESVAKLAEGGMRDALSILEQCLAYNNELTVESV 234

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETI 285
                  ++             D++ +     N   G + I+ +
Sbjct: 235 NMVYGLLSMDNKISFIKQLLSKDIKGVLTSLDNMLSGSIDIKRL 278


>gi|222053486|ref|YP_002535848.1| DNA polymerase III, subunits gamma and tau [Geobacter sp. FRC-32]
 gi|221562775|gb|ACM18747.1| DNA polymerase III, subunits gamma and tau [Geobacter sp. FRC-32]
          Length = 576

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 62/205 (30%), Gaps = 40/205 (19%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ      L+  I+  +         LF G  G+GKT+ A+++A+ L    
Sbjct: 11  RPQTFSDLIGQEHVSRTLQNAIDTGRIAHA----FLFTGARGVGKTSSARILAKALNCEH 66

Query: 83  ------------------------RSTSGPVIAKAGDLAALLTNLE------DRDVLFID 112
                                       G       D+  L  N++         +  ID
Sbjct: 67  GLTTEPCNSCPSCSEITDGNSVDVFEIDGASNTGVDDIRELRDNVKYLPSKSRYKIFIID 126

Query: 113 EIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           E+H L+      L   +E+    +  +       +     LSR                +
Sbjct: 127 EVHMLTNNAFNALLKTLEEPPAHVKFIFATTEPHKLPITILSRCQRFDFKRIP---LQKI 183

Query: 171 QDRFGIPIRLNFYEI-EDLKTIVQR 194
            DR    +      I  D   IV R
Sbjct: 184 VDRLRYIVDQEKVSISSDALAIVAR 208


>gi|156093657|ref|XP_001612867.1| replication factor C subunit 2 [Plasmodium vivax SaI-1]
 gi|148801741|gb|EDL43140.1| replication factor C subunit 2, putative [Plasmodium vivax]
          Length = 330

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/218 (22%), Positives = 91/218 (41%), Gaps = 14/218 (6%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+ L++   Q  A S LK  +     R + + H++F GPPG GKT+    +A 
Sbjct: 5   PWVEKYRPKKLDDIVHQTNAVSMLKEVV-----RTKNMPHLIFHGPPGTGKTSAINALAH 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAAL---LTNLEDRDVLFIDEIHRLSIIVEEILYPA--MED 131
           EL      +   +   A D   +      ++    + I + ++++    E L P   +  
Sbjct: 60  ELFGRDNISERVLELNASDDRGINVVREKIKAYTRISISK-NKINSETNETLPPWKLVVL 118

Query: 132 FQLDLMVGEGPSA--RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
            + D+M  +  SA  R ++I  +    I     +  +++P+  R     R     I   K
Sbjct: 119 DEADMMTEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIYSRCS-CYRFQGIPINIKK 177

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             +    K  G+ + D+A  +I   ++G  R A  +L+
Sbjct: 178 DKLLYICKSEGINILDDALDKIIETTQGDLRRAVSILQ 215


>gi|294873159|ref|XP_002766534.1| replication factor C3, putative [Perkinsus marinus ATCC 50983]
 gi|239867474|gb|EEQ99251.1| replication factor C3, putative [Perkinsus marinus ATCC 50983]
          Length = 354

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 70/223 (31%), Gaps = 21/223 (9%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           + E   +   RP+TL++     E    +K F++       AL H+L  GPPG GKT+   
Sbjct: 25  ANELPWVEKYRPKTLDDLVAHQEIIETIKRFVKM-----NALPHLLLHGPPGTGKTSTIL 79

Query: 73  VVAREL------GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
             AR++             +         +   +         F+      S  +   + 
Sbjct: 80  ACARQMYPPGQLRQYVLELNASDARGIDVVRECIKQ-------FVSSRSMFSGSLGTNMP 132

Query: 127 PAMEDFQLDLMVGEGPSA--RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
             +   + D M      A  R ++   S             +   LQ R          +
Sbjct: 133 KLVILDEADNMTSVSQFALRRVIEQYSSNARFCLICNYASKIIPALQSRCTKFRFAPLKD 192

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
            E     V   AK  G+ ++++    +     G  R     L+
Sbjct: 193 AEARMR-VDYVAKCEGVKISEDGMLALLRTGEGDMRKVLNTLQ 234


>gi|296131618|ref|YP_003638865.1| DNA polymerase III, subunits gamma and tau [Thermincola sp. JR]
 gi|296030196|gb|ADG80964.1| DNA polymerase III, subunits gamma and tau [Thermincola potens JR]
          Length = 537

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 67/208 (32%), Gaps = 40/208 (19%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN- 81
           RP+  ++  GQ      L+  I+A +         LF GP G GKTT A+V A+ L    
Sbjct: 11  RPQIFQDIVGQQHITRTLQNAIKANRIAHAY----LFCGPRGTGKTTTAKVFAKALNCKE 66

Query: 82  -----------------------FRSTSGPVIAKAGDLAALLTNLE------DRDVLFID 112
                                               ++  L   ++         +  ID
Sbjct: 67  GPNAEPCNQCNNCIRITDGVSMDVLEIDAASNRGIDEIRDLREKVKFSPTEGRYRIYIID 126

Query: 113 EIHRLSIIVEEILYPAMED--FQLDLMVGEGPSARSVKINLSRFTLIAATTR-VGLLTNP 169
           E+H L+      L   +E+    +  ++      +     LSR           G + + 
Sbjct: 127 EVHMLTTEAFNALLKTLEEPPHHVIFILATTEPHKIPTTILSRCQRFDFRRIGTGEIVDR 186

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
           L+D       L     E+  T++ + A+
Sbjct: 187 LRDVC---ESLQVQTDEETLTLLAKTAE 211


>gi|261868269|ref|YP_003256191.1| hypothetical protein D11S_1608 [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413601|gb|ACX82972.1| hypothetical protein D11S_1608 [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 467

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 64/200 (32%), Gaps = 41/200 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGV- 80
           RP+T  +  GQ    + L     A   R   L H  LF G  G+GKT++A++ A+ L   
Sbjct: 11  RPKTFADVVGQQHILTAL-----ANGLRENRLHHAYLFSGTRGVGKTSIARLFAKGLNCV 65

Query: 81  -----------------------NFRSTSGPVIAKAGDLAALLTNLEDRDVL------FI 111
                                  +          K  D   LL N++ + VL       I
Sbjct: 66  SGVTAEPCGVCEHCNAIEKGNFIDLIEIDAASRTKVEDTRELLDNVQYKPVLGRYKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+H LS      L   +E+    +  ++      +     LSR              + 
Sbjct: 126 DEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPHKLPVTILSRCMQFHLKALEQ---SQ 182

Query: 170 LQDRFGIPIRLNFYEIEDLK 189
           + D     +       E L 
Sbjct: 183 IADYLAYILNQEQIPFESLA 202


>gi|119386357|ref|YP_917412.1| DNA polymerase III subunits gamma and tau [Paracoccus denitrificans
           PD1222]
 gi|119376952|gb|ABL71716.1| DNA polymerase III, subunits gamma and tau [Paracoccus
           denitrificans PD1222]
          Length = 592

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 57/260 (21%), Positives = 88/260 (33%), Gaps = 26/260 (10%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           +S +           RP T  +  GQ      LK    A +         +  G  G GK
Sbjct: 1   MSESERNYQVLARKYRPETFADLVGQDAMVRTLKNAFAADRIAQA----FVMTGIRGTGK 56

Query: 68  TTLAQVVARELGVN-FRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIV--- 121
           TT A+++A+ L         GP     G     +   E R  DV+ +D   R  +     
Sbjct: 57  TTTARIIAKGLNCTGPDGQGGPTTEPCGVCEHCVAISEGRHVDVMEMDAASRTGVNDIRE 116

Query: 122 --EEILYPAMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPL 170
             E + Y A        ++ E             ++++        I ATT +  +   +
Sbjct: 117 IIESVHYRAASARYKIYIIDEVHMLSTSAFNALLKTLEEPPPHVKFIFATTEIRKVPVTV 176

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
             R      L   E E +  +++R A   G  +TD+A   I   + G+ R A  LL    
Sbjct: 177 LSRCQ-RFDLRRIEPEVMIALLRRIATTEGAQITDDALALITRAAEGSARDATSLL---- 231

Query: 231 DFAEVAHAKTITREIADAAL 250
           D A    A   T     A L
Sbjct: 232 DQAISHGAGETTATQVRAML 251


>gi|34762904|ref|ZP_00143886.1| DNA polymerase III subunit gamma/tau [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|27887431|gb|EAA24519.1| DNA polymerase III subunit gamma/tau [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
          Length = 490

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/242 (19%), Positives = 100/242 (41%), Gaps = 22/242 (9%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVAREL 78
              RP +  E +G+ E   +LK+ ++      +++ H  LF GP G+GKTT+A+++A+ +
Sbjct: 13  RKYRPSSFSEVSGENEIVKSLKLSLK-----NKSMAHAYLFSGPRGVGKTTIARLIAKGV 67

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQ 133
                  +G    +  +  A+       D++ ID      I  +  + E+I Y  +E  +
Sbjct: 68  NCLNLKENGEPCNECKNCKAINEG-RFSDLIEIDAASNRSIDEIRSLKEKINYQPVEGLK 126

Query: 134 LDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
              ++ E             ++++   +    I ATT +  +   +  R          +
Sbjct: 127 KVYIIDEAHMLTKEAFNALLKTLEEPPAHVMFILATTELEKILPTIISRCQ-RYDFKPLD 185

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           ++++K  ++   K   L++TD+    I   S G+ R +  +L R+   A          E
Sbjct: 186 LKEMKAGLEHILKEENLSMTDDVYSVIYENSSGSMRDSISILERLIVTANGKEIDLKIAE 245

Query: 245 IA 246
             
Sbjct: 246 DT 247


>gi|331694235|ref|YP_004330474.1| DNA polymerase III subunits gamma and tau [Pseudonocardia
           dioxanivorans CB1190]
 gi|326948924|gb|AEA22621.1| DNA polymerase III, subunits gamma and tau [Pseudonocardia
           dioxanivorans CB1190]
          Length = 829

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 73/235 (31%), Gaps = 19/235 (8%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP    E  GQ      L V + A +         LF GP G GKT+ A+++AR
Sbjct: 14  ALYRKYRPAKFAEVVGQEHVTEPLGVALTAGRINHAY----LFSGPRGCGKTSSARILAR 69

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            L      T  P       +A         DV+ +D      +     + +   Y   E 
Sbjct: 70  SLNCELGPTPDPCGVCPSCIALAPEGPGSIDVVELDAASHGGVDDARELRDRAFYAPAES 129

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                +V E             + V+        I ATT    +   ++ R         
Sbjct: 130 RYRVFIVDEAHMVTTQGFNALLKIVEEPPDHLVFIFATTEPEKVLPTIRSR-THHYPFRL 188

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                L+ +++R     G+ V       +     G+ R    +L ++   A    
Sbjct: 189 IPPGTLRALLERICAEEGVTVAPAVYPLVIRAGGGSARDTLSVLDQLLAGAGEEG 243


>gi|302349009|ref|YP_003816647.1| Cell division control protein 48, AAA family [Acidilobus
           saccharovorans 345-15]
 gi|302329421|gb|ADL19616.1| Cell division control protein 48, AAA family [Acidilobus
           saccharovorans 345-15]
          Length = 736

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 66/271 (24%), Positives = 103/271 (38%), Gaps = 31/271 (11%)

Query: 28  EEFTGQVEACSNLKVFIE--------AAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           ++  G       L+  +E          K   E    VL  GPPG GKT LA+ VA E G
Sbjct: 469 DDIGGLDNVKQELREVVEWPLKHPDVFQKMGIEPPKGVLLFGPPGTGKTMLAKAVATESG 528

Query: 80  VNFRSTSGP-VIAK-AGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMED 131
            NF +  GP V++K  G+    +     R       V+F DEI  ++         + + 
Sbjct: 529 ANFIAIRGPEVLSKWVGESEKAIRETFRRAREVAPVVVFFDEIDSIAPAR----GYSFDS 584

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
              D +V +  +     + LS   ++AAT R  +L   L    RF   I +   + E  K
Sbjct: 585 GVTDRIVNQLLTEMDGIVPLSNVVILAATNRPDILDPALLRPGRFDRVIYVPPPDRESRK 644

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA---KTITREIA 246
            I +   +   LA  D     +A  + G        + R   FA++        +  +  
Sbjct: 645 QIFKVHLRKVPLA-NDVDIDRLADLTEGYTGADIAAVVREAVFAKLREKLEPGPVEWKHF 703

Query: 247 DAALLR-----LAIDKMGFDQLDLRYLTMIA 272
           + AL R        D M ++Q+  R   MI 
Sbjct: 704 EQALKRVKPSLSREDVMRYEQMGDRLKKMIM 734



 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/168 (23%), Positives = 64/168 (38%), Gaps = 15/168 (8%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLED 105
           E    +L  GPPG GKT LA+ +A E+G  F + +GP I           L  +    ++
Sbjct: 225 EPPKGILLYGPPGTGKTLLAKALANEIGAYFIAINGPEIMSKFYGESEERLREVFKEAQE 284

Query: 106 R--DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
               ++FIDEI  ++   EE+     +     L+               +  +I AT R 
Sbjct: 285 NAPSIIFIDEIDSIAPKREEVTGEVEKRVVAQLLT-----LMDGIQERGKVIVIGATNRP 339

Query: 164 GLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAAC 209
             L   L+   RF   I +   + +    I+Q   +   L      A 
Sbjct: 340 EDLDPALRRPGRFDREIEIRPPDKQGRLEILQVHTRNMPLDSDVNLAE 387


>gi|225626583|ref|ZP_03784622.1| DNA polymerase III, subunits gamma and tau [Brucella ceti str.
           Cudo]
 gi|260169621|ref|ZP_05756432.1| DNA polymerase III subunits gamma and tau [Brucella sp. F5/99]
 gi|261759150|ref|ZP_06002859.1| DNA polymerase III gamma and tau [Brucella sp. F5/99]
 gi|225618240|gb|EEH15283.1| DNA polymerase III, subunits gamma and tau [Brucella ceti str.
           Cudo]
 gi|261739134|gb|EEY27130.1| DNA polymerase III gamma and tau [Brucella sp. F5/99]
          Length = 602

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 90/248 (36%), Gaps = 25/248 (10%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+  ++  GQ      L+   E  +         +  G  G+GKTT A+++AR L
Sbjct: 14  ARKYRPQNFDDLIGQEPMVRTLRNAFETGRIAQAW----MLTGVRGVGKTTTARILARAL 69

Query: 79  GVNFRSTSGPVI--AKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
                +   P I  +  G+    +      DV+ +D      I  +  I+E++ Y  +  
Sbjct: 70  NYKTDTVDQPTIDLSTPGEHCQAIMEGRHVDVIEMDAASHTGIDDIREIIEQVRYRPVSA 129

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT +  +   +  R      L  
Sbjct: 130 RYKVYIIDEVHMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKVPITVLSRCQ-RFDLRR 188

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            E   L   ++R A+   + V D +   IA    G+ R +  +     D A    A ++T
Sbjct: 189 IESGTLAQHLRRIAEAEKIEVDDASLAMIARAGEGSARDSLSIF----DQAIAHGASSVT 244

Query: 243 REIADAAL 250
            E   + L
Sbjct: 245 AEAVRSML 252


>gi|18976465|ref|NP_577822.1| replication factor C small subunit [Pyrococcus furiosus DSM 3638]
 gi|42559506|sp|Q8U4J3|RFCS_PYRFU RecName: Full=Replication factor C small subunit; Short=RFC small
           subunit; AltName: Full=Clamp loader small subunit;
           AltName: Full=PfuRFC small subunit; Contains: RecName:
           Full=Pfu RFC intein
 gi|18892004|gb|AAL80217.1| replication factor C, small subunit [Pyrococcus furiosus DSM 3638]
          Length = 852

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/129 (24%), Positives = 54/129 (41%), Gaps = 11/129 (8%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK--TTLAQ 72
           E   +   RP+ L++  GQ      LK +++       ++ H+LF GPPG+GK  T   +
Sbjct: 12  EKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTG-----SMPHLLFAGPPGVGKCLTGDTK 66

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
           V+A           G ++ K        T ++   VL IDE  +L     + +Y    D 
Sbjct: 67  VIANGQLFE----LGELVEKLSGGRFGPTPVKGLKVLGIDEDGKLREFEVQYVYKDRTDR 122

Query: 133 QLDLMVGEG 141
            + +    G
Sbjct: 123 LIKIKTQLG 131



 Score = 40.1 bits (92), Expect = 0.49,   Method: Composition-based stats.
 Identities = 36/182 (19%), Positives = 59/182 (32%), Gaps = 32/182 (17%)

Query: 62  PPGLGKTTLAQVVARE-----LGVNFRSTSGPVIAKAGDLAALLTNLED--------RDV 108
           P  +  TT A  +ARE        NF   +         +   +               +
Sbjct: 579 PTVVHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKI 638

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +F+DE   L+   ++ L   ME F                   S    I +      +  
Sbjct: 639 IFLDEADALTQDAQQALRRTMEMFS------------------SNVRFILSCNYSSKIIE 680

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
           P+Q R  I  R      ED+   ++  A+  GL +T+E    I   + G  R A  +L+ 
Sbjct: 681 PIQSRCAI-FRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQA 739

Query: 229 VR 230
             
Sbjct: 740 AA 741


>gi|298675294|ref|YP_003727044.1| AAA ATPase central domain-containing protein [Methanohalobium
           evestigatum Z-7303]
 gi|298288282|gb|ADI74248.1| AAA ATPase central domain protein [Methanohalobium evestigatum
           Z-7303]
          Length = 499

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/237 (17%), Positives = 81/237 (34%), Gaps = 8/237 (3%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +S+        RP TL +  G  +A  +LK + E           V+  G  G+GKT+ A
Sbjct: 1   MSEPIEWAEKYRPSTLSDVVGNKKALESLKKWAEEWLDNVPEKRAVILHGRAGIGKTSTA 60

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
             +A + G      +      A  +  +  +      LF     RL ++ E        D
Sbjct: 61  YALANDFGWEVIELNASDQRTAEVINKIAGSASKTGSLFGSGGKRLIVLDEADNLHGTND 120

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
                 + E        + L           V  + + ++++  + I+ N  +   +   
Sbjct: 121 RGGARAISETIKKTDQPVVL-------IANDVYGVASSIRNQC-LEIKFNNVQTRSIAAS 172

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +++  K   +   DE+  ++A  S G  R A   L+      E+      T +    
Sbjct: 173 LKKICKKEDINCDDESIEKLAQDSDGDVRSAINDLQAAVSGNELHIEDIATSQRDTE 229


>gi|291244804|ref|XP_002742285.1| PREDICTED: replication factor C 4-like [Saccoglossus kowalevskii]
          Length = 288

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 52/135 (38%), Gaps = 26/135 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP++++E   Q E  + LK  IE +      L ++LF GPPG GKT+    VAR
Sbjct: 36  PWVEKYRPKSVDEVAFQDEVVAVLKKSIEGSD-----LPNLLFYGPPGTGKTSTILAVAR 90

Query: 77  -------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD--------VLFIDEIH 115
                        EL  +       V  K    A L  +    D        ++ +DE  
Sbjct: 91  ELFGNEMFRTRVLELNASDERGINVVREKVKRFAQLSASATRSDGKPCPPYKIIILDEAD 150

Query: 116 RLSIIVEEILYPAME 130
            ++   +  L   ME
Sbjct: 151 SMTGAAQAALRRTME 165


>gi|315503329|ref|YP_004082216.1| DNA polymerase iii, subunits gamma and tau [Micromonospora sp. L5]
 gi|315409948|gb|ADU08065.1| DNA polymerase III, subunits gamma and tau [Micromonospora sp. L5]
          Length = 970

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 46/260 (17%), Positives = 83/260 (31%), Gaps = 27/260 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RPRT  E  GQ +    L   + + +         LF GP G GKT+ A+++AR
Sbjct: 4   ALYRKYRPRTFAEMIGQEQVTEPLSQALRSGRLNHAY----LFSGPRGCGKTSSARILAR 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR----DVLFID-----EIHRLSIIVEEILYP 127
            L        GP     G   +      D     DV+ ID      +     + E+  + 
Sbjct: 60  SLNCE----QGPTPEPCGQCDSCRGLAPDGGGSIDVIEIDAASHGGVDDARELREKAFFA 115

Query: 128 AMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
                    ++ E             + V+        I ATT    +   ++ R     
Sbjct: 116 PARSRFKIYIIDEAHMVSSAGFNALLKLVEEPPEYVKFIFATTEPEKVLGTIKSR-THHY 174

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
               +  + ++  +++  +  G+ V       +     G+ R +  +L ++   A     
Sbjct: 175 PFRLFPPKVVRPYLEQLCEAEGVKVEPAVFPLVVRAGGGSMRDSLSVLDQLIAGAGPEGV 234

Query: 239 KTITREIADAALLRLAIDKM 258
                           ID+M
Sbjct: 235 GYARAAALLGVTDAALIDEM 254


>gi|302870394|ref|YP_003839031.1| DNA polymerase III subunits gamma and tau [Micromonospora
           aurantiaca ATCC 27029]
 gi|302573253|gb|ADL49455.1| DNA polymerase III, subunits gamma and tau [Micromonospora
           aurantiaca ATCC 27029]
          Length = 970

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 46/260 (17%), Positives = 83/260 (31%), Gaps = 27/260 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RPRT  E  GQ +    L   + + +         LF GP G GKT+ A+++AR
Sbjct: 4   ALYRKYRPRTFAEMIGQEQVTEPLSQALRSGRLNHAY----LFSGPRGCGKTSSARILAR 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR----DVLFID-----EIHRLSIIVEEILYP 127
            L        GP     G   +      D     DV+ ID      +     + E+  + 
Sbjct: 60  SLNCE----QGPTPEPCGQCDSCRGLAPDGGGSIDVIEIDAASHGGVDDARELREKAFFA 115

Query: 128 AMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
                    ++ E             + V+        I ATT    +   ++ R     
Sbjct: 116 PARSRFKIYIIDEAHMVSSAGFNALLKLVEEPPEYVKFIFATTEPEKVLGTIKSR-THHY 174

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
               +  + ++  +++  +  G+ V       +     G+ R +  +L ++   A     
Sbjct: 175 PFRLFPPKVVRPYLEQLCEAEGVKVEPAVFPLVVRAGGGSMRDSLSVLDQLIAGAGPEGV 234

Query: 239 KTITREIADAALLRLAIDKM 258
                           ID+M
Sbjct: 235 GYARAAALLGVTDAALIDEM 254


>gi|260551269|ref|ZP_05825471.1| DNA polymerase III [Acinetobacter sp. RUH2624]
 gi|260405726|gb|EEW99216.1| DNA polymerase III [Acinetobacter sp. RUH2624]
          Length = 703

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 50/262 (19%), Positives = 79/262 (30%), Gaps = 57/262 (21%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RPR   E  GQ          + +A  R       LF G  G+GKTT+A+++A+ L
Sbjct: 6   ARKYRPRNFNELVGQNHV----SRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCL 61

Query: 79  GVNF------------------------RSTSGPVIAKAGDLAALLTNL------EDRDV 108
                                                K  D   LL N+          V
Sbjct: 62  NCETGVTATPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKV 121

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
             IDE+H LS      L   +E+                         + ATT    L  
Sbjct: 122 YLIDEVHMLSTHSFNALLKTLEE------------------PPEHVKFLFATTDPQKLPI 163

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            +  R  +   L    ++++   +    +   +    +A  +IA  ++G+ R A  L   
Sbjct: 164 TVISRC-LQFTLRPLAVDEITKHLGAILEKEQITADQDAIWQIAESAQGSLRDALSL--- 219

Query: 229 VRDFAEVAHAKTITREIADAAL 250
             D A      +I  +     L
Sbjct: 220 -TDQAIAYGQGSIHHQDVKEML 240


>gi|228949834|ref|ZP_04112044.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228809892|gb|EEM56303.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 553

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 85/232 (36%), Gaps = 22/232 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     RP    E  GQ      ++  ++ AK       H  +F GP G GKTT+A+++A
Sbjct: 9   ALYRKYRPTNFIELIGQNHIKQTIQNALKLAK-----FSHAYMFTGPRGTGKTTIAKLIA 63

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAME 130
             L     +  G    +     A+  N    DVL ID      + ++  I E++ Y    
Sbjct: 64  TSLNCENLNNEGEPCNECSQCKAIRGNSHA-DVLEIDAASNNGVEQIREIREQVAYAPGT 122

Query: 131 DFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
                 ++ E             ++++        I ATT V  +   +  R        
Sbjct: 123 GKYKVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTDVHKVPTTIISRCQ-RFDFR 181

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                D+   ++  A    + + +EA   + M ++G  R A  L+ +   FA
Sbjct: 182 RIGPRDIIERLRHVAIKEEVKIEEEALQLLGMLAQGGMRDALSLMDQTIAFA 233


>gi|14520328|ref|NP_125803.1| replication factor C small subunit [Pyrococcus abyssi GE5]
 gi|42559543|sp|Q9V2G4|RFCS_PYRAB RecName: Full=Replication factor C small subunit; Short=RFC small
          subunit; AltName: Full=Clamp loader small subunit;
          AltName: Full=PabRFC small subunit; Contains: RecName:
          Full=Pab RFC-1 intein; Contains: RecName: Full=Pab
          RFC-2 intein
 gi|5457543|emb|CAB49034.1| rfcS intein containing activator 1, replication factor C, small
          subunit [Pyrococcus abyssi GE5]
          Length = 1437

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 7/64 (10%)

Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK--TTLAQ 72
          E   +   RP+ LEE  GQ      LK +++       ++ H+LF GPPG+GK  T  A+
Sbjct: 14 EKPWVEKYRPQKLEEIVGQEHIVKRLKHYVKTG-----SMPHLLFAGPPGVGKCLTGDAK 68

Query: 73 VVAR 76
          V+A 
Sbjct: 69 VIAN 72


>gi|195163892|ref|XP_002022783.1| GL14564 [Drosophila persimilis]
 gi|194104806|gb|EDW26849.1| GL14564 [Drosophila persimilis]
          Length = 354

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 77/229 (33%), Gaps = 30/229 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RPR++++   Q E  + L+  +E A      L ++L  GPPG GKT+     AR
Sbjct: 32  PWVEKYRPRSVDDVVEQSEVVAVLRKCVEGAD-----LPNMLLYGPPGTGKTSTILAAAR 86

Query: 77  ------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD--------VLFIDEIHR 116
                       EL  +       V  K  + + L  +    D        ++ +DE   
Sbjct: 87  QIFGDMYKDRILELNASDERGINVVRTKIKNFSQLSASHVRPDGRPVPPFKIIILDEADS 146

Query: 117 LSIIVEEILYPAM--EDFQLDLMVGEGPSARSVKINLSRFTLIAATTR-VGLLTNPLQDR 173
           ++   +  L   M  E       +     +R +    SR +           +   LQ  
Sbjct: 147 MTHAAQSALRRTMEKESSSTRFCLICNYVSRIIVPITSRCSKFRFKPLGEEKIIARLQHI 206

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
             +       + +  KTIV+        A+T   +C     S  T   A
Sbjct: 207 CELESVK--IDPDAYKTIVKISGGDLRRAITTLQSCFRLQGSEHTINTA 253


>gi|78777754|ref|YP_394069.1| DNA polymerase III subunits gamma and tau [Sulfurimonas
           denitrificans DSM 1251]
 gi|78498294|gb|ABB44834.1| DNA polymerase III, tau subunit [Sulfurimonas denitrificans DSM
           1251]
          Length = 543

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 68/218 (31%), Gaps = 39/218 (17%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVV 74
           +      RP   +E  GQ      L + ++A +     L H  LF G  G GKT+ A++ 
Sbjct: 6   EVLARKYRPINFDELIGQESISQTLSLALDANR-----LSHAYLFSGLRGSGKTSTARIF 60

Query: 75  ARE------------------------LGVNFRSTSGPVIAKAGDLAALLTNLEDRD--- 107
           ++                           ++     G    K  D+  L+   + +    
Sbjct: 61  SKALICEKGISHKPCGVCQNCILALENRHIDIVEMDGASSRKIDDIRDLIEQTKYKPATA 120

Query: 108 ---VLFIDEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTR 162
              +  IDE+H L+      L   +E+    +  ++      +     LSR       + 
Sbjct: 121 RFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRTQHFRFKSI 180

Query: 163 VGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
                        + +    YE E L  I + G+    
Sbjct: 181 ATNKIADHLSHI-LNLEGIKYESEALDIIARSGSGSLR 217


>gi|330791557|ref|XP_003283859.1| hypothetical protein DICPUDRAFT_147573 [Dictyostelium purpureum]
 gi|325086245|gb|EGC39638.1| hypothetical protein DICPUDRAFT_147573 [Dictyostelium purpureum]
          Length = 851

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/204 (21%), Positives = 73/204 (35%), Gaps = 30/204 (14%)

Query: 20  SLLR------PR-TLEEFTGQVEACSNLKVFIE--------AAKARAEALDHVLFVGPPG 64
           S +R      P+    +  GQ      LK  IE          +   +    +L  GPPG
Sbjct: 572 SSMREVVVEIPKVYWNDIGGQEHIKQKLKEAIEWPLKHPESFIRMGIKPPKGILLYGPPG 631

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHR 116
             KT LA+ +A E G+NF +  GP +           +  +          +LF DEI  
Sbjct: 632 CSKTLLAKALATESGLNFIAVKGPELLSKWVGESERAVRDIFKKARQNAPSILFFDEIDG 691

Query: 117 LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RF 174
           L+I              ++ +V +  +       L+  T+I AT R  ++   +    R 
Sbjct: 692 LAISR-----SGEGSGAVERVVSQLLTEMDGIQPLTNVTIIGATNRPDIIDKAILRAGRI 746

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKL 198
              + ++  + +  K I     K 
Sbjct: 747 DRILYISPPDFDARKEIFNIHLKK 770



 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 16/109 (14%)

Query: 32  GQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARELGVNFR 83
           G       ++  IE +  +++ L+         +L  GPPG GKT LA++V+ +      
Sbjct: 299 GLDNQVKQIREIIELSFYKSKLLNSFGIKPPKGILLYGPPGTGKTLLARIVSNQTNATLF 358

Query: 84  STSGPVIAKA------GDLAALLTNLEDR--DVLFIDEIHRLSIIVEEI 124
           + +G  I           L  +      +   ++FIDE+  L    EE 
Sbjct: 359 TINGADILDKFYGMTEKTLLNIFKEASRKAPSIIFIDELDALCPKREEN 407


>gi|149182697|ref|ZP_01861164.1| DNA polymerase III (gamma and tau subunits) [Bacillus sp. SG-1]
 gi|148849607|gb|EDL63790.1| DNA polymerase III (gamma and tau subunits) [Bacillus sp. SG-1]
          Length = 565

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 82/228 (35%), Gaps = 25/228 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+   +  GQ      L    + A  + +     LF GP G GKT+ A+++A+ +    
Sbjct: 11  RPQQFIDVVGQQHVTKTL----QNALLQQKISHAYLFSGPRGTGKTSAAKILAKAVNCER 66

Query: 83  RSTSGPVIAKAGDLAALL--TNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLD 135
                PV     +  + L  T+    DV+ ID      +  +  I +++ Y         
Sbjct: 67  ----APVAEPCNECDSCLGITDGSIPDVIEIDAASNNGVEEIRDIRDKVKYAPNVVSYKV 122

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             ++++        I ATT    +   +  R             
Sbjct: 123 YIIDEVHMLSIGAFNALLKTLEEPPKHVIFILATTEPHKIPLTIISRCQ-RFDFKRITAR 181

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
           D+   +   A  +G+   ++A   +A  + G  R A  LL +   F++
Sbjct: 182 DIVGRMTHIADESGVQYEEKALHVVARAAEGGMRDALSLLDQAISFSQ 229


>gi|56754473|gb|AAW25424.1| SJCHGC05804 protein [Schistosoma japonicum]
          Length = 335

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 76/219 (34%), Gaps = 22/219 (10%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   +   RP  L++  G     S L VF     +R   L +++  GPPG GKTT    +
Sbjct: 19  EPPWVEKYRPIELKDIVGNENTISRLSVF-----SREGNLPNIIIAGPPGCGKTTSILCL 73

Query: 75  AREL-----GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           AR +            +         +   +     + V   +   ++ I+ E       
Sbjct: 74  ARTMLKDAYKDAVLEMNASNERGIEVVRTKIKMFAQKKVSLPEGRQKMIILDEADS---- 129

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIA-ATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
                 +  G   + R +    SR T  A A      L  P+Q R  +         + +
Sbjct: 130 ------MTEGAQQALRRIMELYSRTTRFALACNDSSKLIEPIQSRCAVLRYTRLTSAQIM 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             +++  +   G++ T+E    I   + G  R A   L+
Sbjct: 184 ARLLE-VSHSEGVSYTEEGLEAIVFTADGDMRQALNNLQ 221


>gi|330833937|ref|YP_004408665.1| AAA family ATPase, CDC48 subfamily protein [Metallosphaera cuprina
           Ar-4]
 gi|329566076|gb|AEB94181.1| AAA family ATPase, CDC48 subfamily protein [Metallosphaera cuprina
           Ar-4]
          Length = 753

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 55/242 (22%), Positives = 88/242 (36%), Gaps = 24/242 (9%)

Query: 11  NVSQEDADISLLRPR-TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVG 61
            + +E    + + PR T E+     +    L+  IE      E   H        VL  G
Sbjct: 159 TIKEEPVREAQVYPRVTWEDIGDLDDVKEKLREMIELPMKHPELFQHLGIEPPKGVLLYG 218

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDE 113
           PPG+GKT LA+ +A E+G  F S +GP I           L  +  + +     ++FIDE
Sbjct: 219 PPGVGKTLLARALANEIGAYFVSINGPEIMSKFYGESEQRLREIFDDADKNAPSIIFIDE 278

Query: 114 IHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD- 172
           I  ++   EE+     +     L+               R  +I AT R   +   L+  
Sbjct: 279 IDAIAPSREEVTGEVEKRVVSQLLT-----LMDGIKGRGRIVVIGATNRPNAVDQALRRP 333

Query: 173 -RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            RF   I +   + +  K I+Q   +   L+          M    T      L +    
Sbjct: 334 GRFDREIEIRPPDTKARKEILQVHTRNMPLSDDVNLNLIAEMTYGYTGADIAALAKEAAM 393

Query: 232 FA 233
           +A
Sbjct: 394 YA 395



 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 45/189 (23%), Positives = 70/189 (37%), Gaps = 23/189 (12%)

Query: 24  PR-TLEEFTGQVEACSNLKVFIE--------AAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           P+    E  G       L+  +E          K        VL  GPPG GKT LA+ V
Sbjct: 449 PKVRWSEIGGLDNVKQQLREAVEWPMRFPDVFNKTGIRPPKGVLLFGPPGTGKTMLAKAV 508

Query: 75  ARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILY 126
           A E G NF +  GP +           +  +          V+F DEI  ++ +      
Sbjct: 509 ATESGANFIAVRGPEVLSKWVGESEKAIREIFKRARQTAPTVIFFDEIDSIAPMR----G 564

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
              +    + MV +  S     + LS+  +IAAT R  ++   L    RF   I +   +
Sbjct: 565 MGYDSGVTERMVNQLLSEMDGIVPLSKVVVIAATNRPDIIDPGLLRPGRFDRLIYVPPPD 624

Query: 185 IEDLKTIVQ 193
            +    I++
Sbjct: 625 KQARLEILK 633


>gi|294630200|ref|ZP_06708760.1| DNA polymerase III, subunits gamma and tau [Streptomyces sp. e14]
 gi|292833533|gb|EFF91882.1| DNA polymerase III, subunits gamma and tau [Streptomyces sp. e14]
          Length = 519

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 58/173 (33%), Gaps = 22/173 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP +  E  GQ      L+  +   +         LF GP G GKTT A+++AR
Sbjct: 15  ALYRRYRPESFAEVIGQEHVTDPLQQALRNNRVNHAY----LFSGPRGCGKTTSARILAR 70

Query: 77  ELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFIDEIHRLSII------VEEILYPA 128
            L      T  P        DLA         DV+ ID      +        +    PA
Sbjct: 71  CLNCEEGPTPTPCGACQSCQDLA--RNGPGSIDVIEIDAASHGGVDDARDLREKAFFGPA 128

Query: 129 MEDFQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
              +++ ++         G     + V+        I ATT    +   ++ R
Sbjct: 129 RSRYKIYIIDEAHMVTSAGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSR 181


>gi|134094277|ref|YP_001099352.1| DNA polymerase III subunit tau/gamma [Herminiimonas arsenicoxydans]
 gi|133738180|emb|CAL61225.1| DNA polymerase III subunit tau [Contains: DNA polymerase III
           subunit gamma] [Herminiimonas arsenicoxydans]
          Length = 682

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 52/282 (18%), Positives = 98/282 (34%), Gaps = 34/282 (12%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARE 77
               RP++ +   GQ      L   +E      + L H  LF G  G+GKTTL++++A+ 
Sbjct: 7   ARKYRPKSFDTLVGQEHVVRALTHALE-----NKRLHHAYLFTGTRGVGKTTLSRILAKS 61

Query: 78  LGVNFRSTSGPVIAKA-GDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAM 129
                   +G + A   G   A +     R V +I+        +  ++ ++E+ +Y   
Sbjct: 62  FNCIGPDGNGDITATPCGVCEACVAIDAGRFVDYIEMDAASNRGVDEMAQLLEQAVYAPS 121

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                  M+ E             ++++        I ATT    +   +  R  +   L
Sbjct: 122 NARFKVYMIDEVHMLTNHAFNSMLKTLEEPPEHVKFILATTDPQKIPVTVLSRC-LQFNL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
                  +   +        +     A   +A  + G+ R A  L  +   +A    A  
Sbjct: 181 KQMPPGHIVAHLDDILGQEQIEFETPALRLLAQGAHGSMRDALSLTDQAIAYA----AGK 236

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGI 282
           +T E     L  L    +      +R L  +A+  G G + +
Sbjct: 237 VTLEAVQGMLGALDQSFL------IRLLDALAQKDGAGLLAV 272


>gi|89892857|ref|YP_516344.1| hypothetical protein DSY0111 [Desulfitobacterium hafniense Y51]
 gi|89332305|dbj|BAE81900.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 557

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 64/210 (30%), Gaps = 37/210 (17%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  ++  GQ      L   +  +K         LF GP G GKTT A+V+A+ L    
Sbjct: 11  RPKNFKDMVGQDHVTKTLTNALMQSKVAHAY----LFSGPRGTGKTTTAKVLAKALNCEH 66

Query: 83  R------------------------STSGPVIAKAGDLAALLTNLE------DRDVLFID 112
           R                                   ++  L   +          V  ID
Sbjct: 67  REGVEPCNQCAFCLSIDQGSAMEVFEIDAASNRGIDEIRDLRDKVRLSAGESKYKVYIID 126

Query: 113 EIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           E+H L+      L   +E+   ++  ++      +     LSR              +  
Sbjct: 127 EVHMLTTEAFNALLKTLEEPPERVVFILATTEVHKIPLTILSRVQRFEFHRIPLEQIHSH 186

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
            D+    I  +  E E L+ I Q+      
Sbjct: 187 LDKVCQTIGRDV-EPEALQIIAQKSEGGLR 215


>gi|322368972|ref|ZP_08043539.1| replication factor C large subunit [Haladaptatus paucihalophilus
           DX253]
 gi|320551703|gb|EFW93350.1| replication factor C large subunit [Haladaptatus paucihalophilus
           DX253]
          Length = 488

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 74/206 (35%), Gaps = 20/206 (9%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
                RP TL E  G  +A   LK + +  +   +A   V+  G PG+GKT+ A  +A +
Sbjct: 4   WTEKYRPTTLSEVRGNNKARDKLKQWADTWEDHGDA---VILHGSPGVGKTSAAHALAND 60

Query: 78  LGVNFR------STSGPVIAKAGDLAALLTNLEDRD----VLFIDEIHRLSIIVEEILYP 127
           +G            +G V+ +    AA    L        V+ +DE   L+   +     
Sbjct: 61  MGWPTIELNASDQRTGDVVKRVAGEAAKSGTLTGGTAGRRVVIMDEADNLTHNADRGGSR 120

Query: 128 AMEDFQLD-----LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           A+ D         +++       S  +  +  T+         +   L+D          
Sbjct: 121 AITDVVKSANQPLILIANEFYDMSNSLRNACETIEFRNVSARSIVPALRDIC--RQENIE 178

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAA 208
           YE E L+ I +  +     AV D  A
Sbjct: 179 YESEALEAIAENDSGDLRSAVNDLQA 204


>gi|254480715|ref|ZP_05093962.1| DNA polymerase III, subunits gamma and tau, putative [marine gamma
           proteobacterium HTCC2148]
 gi|214039298|gb|EEB79958.1| DNA polymerase III, subunits gamma and tau, putative [marine gamma
           proteobacterium HTCC2148]
          Length = 591

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 82/227 (36%), Gaps = 27/227 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP++  E  GQ      L+  I A     + L H  LF G  G+GKTT+A+++A+ L   
Sbjct: 11  RPKSFGEMVGQEHV---LQALINA--LDHDRLHHAYLFTGTRGVGKTTIARILAKCLNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEIL-----YPAMEDFQL 134
              +S P     G+  + L   E R  D+L +D   R  +     L     Y        
Sbjct: 66  QGVSSHP----CGECGSCLEIAEGRSVDLLEVDAASRTKVEDTRELLENVQYAPTRSRYK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             ++ E             ++++        + ATT    L   +  R  +   L     
Sbjct: 122 VYLIDEVHMLSTSSFNALLKTLEEPPPHVKFLLATTDPQKLPATVLSRC-LQFNLKNMPP 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           E +   +    +   ++  + A   +   + G+ R A  L  +   F
Sbjct: 181 EQIVGHLANVLEHEMVSFEEPALWLLGRAASGSMRDALSLTDQAIAF 227


>gi|145641123|ref|ZP_01796704.1| DNA polymerase III subunits gamma and tau [Haemophilus influenzae
           R3021]
 gi|145274284|gb|EDK14149.1| DNA polymerase III subunits gamma and tau [Haemophilus influenzae
           22.4-21]
          Length = 688

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 51/282 (18%), Positives = 88/282 (31%), Gaps = 65/282 (23%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T  +  GQ    + L     A   +   L H  LF G  G+GKT++A++ A+ L   
Sbjct: 11  RPKTFADVVGQEHIITAL-----ANGLKDNRLHHAYLFSGTRGVGKTSIARLFAKGLNCV 65

Query: 82  F------------------------RSTSGPVIAKAGDLAALLTNLEDRDVL------FI 111
                                             K  D   LL N++ + V+       I
Sbjct: 66  HGVTATPCGECENCKAIEQGNFIDLIEIDAASRTKVEDTRELLDNVQYKPVVGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSRHSFNALLKTLEE------------------PPEYVKFLLATTDPQKLPVTIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L   +   +   +        +   + A  ++A  ++G+ R +  L     D
Sbjct: 168 SRC-LQFHLKALDETQISQHLAHILTQENIPFEEPALVKLAKAAQGSIRDSLSL----TD 222

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIAR 273
            A     + +T  +    L  L       D   +  L  + +
Sbjct: 223 QAIAMGDRQVTNNVVSNMLGLLD------DNYSVDILYALHQ 258


>gi|51891151|ref|YP_073842.1| DNA polymerase III gamma and tau subunits [Symbiobacterium
           thermophilum IAM 14863]
 gi|51854840|dbj|BAD38998.1| DNA polymerase III gamma and tau subunits [Symbiobacterium
           thermophilum IAM 14863]
          Length = 570

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 92/249 (36%), Gaps = 24/249 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+   E  GQ      L+  I     +       L  GP G GKTT+A+++A+ +    
Sbjct: 11  RPQRFGEVVGQEHITRTLRNAI----VQGRLHHAYLLSGPRGTGKTTVARILAKAVNCLN 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P      +    +T+ E  D++ ID      I  +  + +++ +  +E      +
Sbjct: 67  PQDGEPCNEC--EACRRITSGEALDLIEIDAASNRGIDEIRDLRDKVNFAPVELKYKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++   +    + ATT    L   +  R            +++
Sbjct: 125 IDEVHMLTEPAFNALLKTLEEPPAHVLFVLATTEKQKLPITILSRCQ-AFDYRRLSADEI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              ++      GL  + EA   IA  + G  R A  LL +V  +A       IT ++  A
Sbjct: 184 VARLREVCGKQGLKASPEALAAIARHADGGMRDALSLLDQVMAYAA---EGEITLDMTLA 240

Query: 249 ALLRLAIDK 257
            L    +D+
Sbjct: 241 VLGTAPLDQ 249


>gi|309972967|gb|ADO96168.1| DNA polymerase III, subunits gamma and tau [Haemophilus influenzae
           R2846]
          Length = 689

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 51/282 (18%), Positives = 88/282 (31%), Gaps = 65/282 (23%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T  +  GQ    + L     A   +   L H  LF G  G+GKT++A++ A+ L   
Sbjct: 11  RPKTFADVVGQEHIITAL-----ANGLKDNRLHHAYLFSGTRGVGKTSIARLFAKGLNCV 65

Query: 82  F------------------------RSTSGPVIAKAGDLAALLTNLEDRDVL------FI 111
                                             K  D   LL N++ + V+       I
Sbjct: 66  HGVTATPCGECENCKAIEQGNFIDLIEIDAASRTKVEDTRELLDNVQYKPVVGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSRHSFNALLKTLEE------------------PPEYVKFLLATTDPQKLPVTIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L   +   +   +        +   + A  ++A  ++G+ R +  L     D
Sbjct: 168 SRC-LQFHLKALDETQISQHLAHILTQENIPFEEPALVKLAKAAQGSIRDSLSL----TD 222

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIAR 273
            A     + +T  +    L  L       D   +  L  + +
Sbjct: 223 QAIAMGDRQVTNNVVSNMLGLLD------DNYSVDILYALHQ 258


>gi|327334774|gb|EGE76485.1| DNA polymerase III subunit gamma [Propionibacterium acnes HL097PA1]
          Length = 941

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/237 (19%), Positives = 74/237 (31%), Gaps = 23/237 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T +E  G+      LK  I   +         LF GP G GKTT A+++AR
Sbjct: 100 ALYRRYRPETFDEVIGEDHVIEPLKRAILNNRVNHAY----LFSGPRGCGKTTTARILAR 155

Query: 77  ELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAM 129
            L      T  P        DLA         DV+ ID      +     + E   +  +
Sbjct: 156 ALNCEQGPTPTPCGTCQSCRDLAC--GGPGSIDVIEIDAASHGGVDDARDLRERAFFAPV 213

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                  ++ E             + V+        I ATT    +   ++ R       
Sbjct: 214 HSRYKIYIIDEAHMVTPQGFNALLKLVEEPPPHVKFIFATTEPEKVIGTIRSR-THHYPF 272

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                + L   +       G+ V       +     G+ R +  +L ++   A   H
Sbjct: 273 RLVPPKVLVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVLDQLLGGAADGH 329


>gi|302830262|ref|XP_002946697.1| DNA replication factor C complex subunit 4 [Volvox carteri f.
           nagariensis]
 gi|300267741|gb|EFJ51923.1| DNA replication factor C complex subunit 4 [Volvox carteri f.
           nagariensis]
          Length = 328

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 77/234 (32%), Gaps = 44/234 (18%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+ + E   Q E  + L   +E A      L H+LF GPPG GKT+ A  +AR
Sbjct: 5   PWVEKYRPKNVNEVAYQEEVVNTLTRALETA-----NLPHLLFYGPPGTGKTSTALAIAR 59

Query: 77  -------------ELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHR 116
                        EL  +       V  K    AA                +L +DE   
Sbjct: 60  QLYGPELMKSRVMELNASDERGIHVVREKVKSFAAAAVGAPVPGYPCPPYKLLILDEADS 119

Query: 117 LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
           ++   +  L   ME +                  ++RF  I     V  +  PL  R   
Sbjct: 120 MTQDAQSALRRTMETYS----------------RVTRFVFIC--NYVSRIIEPLASRCA- 160

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
             R    +   +   ++   +  G+ +   A   ++  S G  R A   L+   
Sbjct: 161 KFRFKPLQPTVMAGRIEHICEREGVTLAPGALEALSSVSGGDLRRAITTLQSAA 214


>gi|254496164|ref|ZP_05109061.1| DNA polymerase III subunits gamma and tau [Legionella drancourtii
           LLAP12]
 gi|254354620|gb|EET13258.1| DNA polymerase III subunits gamma and tau [Legionella drancourtii
           LLAP12]
          Length = 554

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 50/231 (21%), Positives = 85/231 (36%), Gaps = 27/231 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPRT  +  GQ       K  I A   +   L H  LF G  G+GKT++A+++A+ L   
Sbjct: 11  RPRTFSQLVGQEHI---NKALINALNQQ--RLHHAYLFTGTRGVGKTSIARILAKSLNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILY------PAMEDFQ 133
              +S P         A +   + R  D++ ID   +  +     L       PA   F+
Sbjct: 66  HGISSEP----CLQCNACMAIEQGRFIDLIEIDGASKTRVEDTRDLLDNVQYAPASGRFK 121

Query: 134 LDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           + L+               ++++   +    I ATT    L   +  R  +   L     
Sbjct: 122 IYLIDEVHMLSQHSFNALLKTLEEPPAHVKFILATTDPQKLPVTVLSRC-LQFNLKHLAA 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
           + +   +Q       L     A   +A  +RG+ R A  LL +     ++ 
Sbjct: 181 DVISQHLQLILNDEQLDFEVAALDILAQAARGSMRDALSLLDQAITSCDIK 231


>gi|225387325|ref|ZP_03757089.1| hypothetical protein CLOSTASPAR_01077 [Clostridium asparagiforme
           DSM 15981]
 gi|225046574|gb|EEG56820.1| hypothetical protein CLOSTASPAR_01077 [Clostridium asparagiforme
           DSM 15981]
          Length = 566

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 82/224 (36%), Gaps = 21/224 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP + E+  GQ      LK  I + +         LF G  G GKT++A++ AR +    
Sbjct: 11  RPASFEDVKGQDPIVQTLKNQITSGRIGHAY----LFCGTRGTGKTSIAKIFARAVNCEN 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P         A+++      V+ ID      +  +  I +++ YP  +      +
Sbjct: 67  PVNGSPCNECPA-CRAIISGSSMN-VVEIDAASNNGVENIRDIRDQVQYPPTDGRYRVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++   S    I ATT V  +   +  R           +E +
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPSYVIFILATTEVHKIPITILSRCQRYDFKRI-ALETI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
              ++   +   + V D A   +A  + G+ R A  LL +   F
Sbjct: 184 AGHLRELTRAEHIEVEDRALTYVAKAADGSLRDALSLLDQCVAF 227


>gi|170087828|ref|XP_001875137.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164650337|gb|EDR14578.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 334

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 80/233 (34%), Gaps = 37/233 (15%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR-- 76
           +   RP TL++     +  + ++ FIE        L H+LF GPPG GKT+    VAR  
Sbjct: 18  VEKYRPVTLDDVVSHKDITNTIERFIE-----KNRLPHLLFYGPPGTGKTSTILAVARRI 72

Query: 77  ----------ELGVNFRSTSGPVIAKAGDLAALLT-NLEDRDVLFIDEIHRLSIIVEEIL 125
                     EL  +       V  +    A   T   +   ++ +DE   ++   +  L
Sbjct: 73  YGAQYRKQILELNASDERGIDVVREQVKQFAETRTLFAKGFKLIILDEADMMTQQAQAAL 132

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
              +E +                              V  +T  +Q R     R +    
Sbjct: 133 RRVIEQYT------------------KNVRFCIICNYVNKITPAIQSRC-TRFRFSPLPA 173

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
            +++  V+   +   +++TD+    +   SRG  R A  +L+      +    
Sbjct: 174 IEVEKRVKTVVEAEQVSLTDDGKKALLKLSRGDMRRALNVLQACHAAYDTIGE 226


>gi|297619932|ref|YP_003708037.1| AAA ATPase central domain-containing protein [Methanococcus voltae
           A3]
 gi|297378909|gb|ADI37064.1| AAA ATPase central domain protein [Methanococcus voltae A3]
          Length = 373

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 73/189 (38%), Gaps = 16/189 (8%)

Query: 27  LEEFTGQVEACSNLKV---FIEAAKARAE-ALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
            EE  GQ  A    K+   ++E  +   E +  ++LF G PG GKT LA+ +A +   N 
Sbjct: 124 FEEIIGQEHAKKKCKIIMKYLEKPEIFGEWSPKNILFYGSPGTGKTMLARALASQTNSNL 183

Query: 83  RSTSGPVI--AKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
           +      +     GD + ++  L          ++FIDEI  +++              +
Sbjct: 184 KLIKATELIGEHVGDSSKVIKGLYADAAANKPCIIFIDEIDAIALSRNYQSLRGDVSEVV 243

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           + ++ E       +        IAAT    +L   ++ RF   I       ++   I++ 
Sbjct: 244 NALLTELDGIHENEG----VITIAATNNPDMLDLAVRSRFEEEILFKIPNEKERLEILKT 299

Query: 195 GAKLTGLAV 203
            +K   +  
Sbjct: 300 YSKKLPIKT 308


>gi|328855833|gb|EGG04957.1| hypothetical protein MELLADRAFT_72257 [Melampsora larici-populina
           98AG31]
          Length = 349

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 80/232 (34%), Gaps = 38/232 (16%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           +  S++   +   RP  L++ TG VE    LKV      AR     H++  G PG+GKTT
Sbjct: 21  KKSSEDIPWVEKYRPIILDDITGNVETIERLKVI-----ARDGNCPHIIISGAPGIGKTT 75

Query: 70  LAQVVAR------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIH 115
               +A             EL  +       V  K    A     L      ++ +DE  
Sbjct: 76  SILCLAHALLGDSYKEGVLELNASDERGIDVVRNKIKTFANTKVTLPPGRHKIIILDEAD 135

Query: 116 RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
            ++   ++ L   ME +           A S +  L       A      +  P+Q R  
Sbjct: 136 SMTSGAQQALRRTMEIY-----------ANSTRFAL-------ACNFSSKIIEPIQSRCA 177

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
           I       + E LK +V+       +   +E    I   + G  R A   L+
Sbjct: 178 ILRYGKLSDQEILKRLVE-ICDAENVKYANEGLAAIIFTAEGDMRQAINNLQ 228


>gi|153828104|ref|ZP_01980771.1| DNA polymerase III, subunits gamma and tau [Vibrio cholerae 623-39]
 gi|148876346|gb|EDL74481.1| DNA polymerase III, subunits gamma and tau [Vibrio cholerae 623-39]
          Length = 462

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 52/265 (19%), Positives = 82/265 (30%), Gaps = 57/265 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP    E  GQ    + L    E A A+       LF G  G+GKTT+ ++ A+ L    
Sbjct: 11  RPTRFSEVVGQSHVLTAL----ENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCET 66

Query: 83  ------------------------RSTSGPVIAKAGDLAALLTNLEDRD------VLFID 112
                                            K  D   LL N++ +       V  ID
Sbjct: 67  GITATPCGQCATCQEIDQGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRFKVYLID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS      L   +E+                         + ATT    L   +  
Sbjct: 127 EVHMLSRHSFNALLKTLEE------------------PPEYVKFLLATTDPQKLPVTILS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R  +   L    +E+++  + +      ++   +A   +A  + G+ R A  L     D 
Sbjct: 169 RC-LQFHLKPISVENIQQQLDKVLHAEQISSDSKALNLLAHAADGSMRDALSL----TDQ 223

Query: 233 AEVAHAKTITREIADAALLRLAIDK 257
           A       +  +I    L  L  D 
Sbjct: 224 AIALGNGVVKSDIVAHMLGTLDTDH 248


>gi|318061420|ref|ZP_07980141.1| DNA polymerase III subunits gamma and tau [Streptomyces sp.
           SA3_actG]
          Length = 421

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 58/175 (33%), Gaps = 26/175 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T  E  GQ      L   +   +         LF GP G GKTT A+++AR
Sbjct: 5   ALYRRYRPETFAEVIGQEHVTDPLSQALRNNRVNHAY----LFSGPRGCGKTTSARILAR 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR----DVLFIDEIHRLSII------VEEILY 126
            L        GP     G+  +      +     DV+ ID      +        +    
Sbjct: 61  CLNCE----QGPTPTPCGECQSCQDLARNGPGSIDVIEIDAASHGGVDDARDLREKAFFG 116

Query: 127 PAMEDFQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           PA   +++ ++         G     + V+        I ATT    +   ++ R
Sbjct: 117 PASSRYKIYIIDEAHMVTSAGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSR 171


>gi|256112542|ref|ZP_05453463.1| DNA polymerase III subunits gamma and tau [Brucella melitensis bv.
           3 str. Ether]
 gi|265993981|ref|ZP_06106538.1| DNA polymerase III gamma and tau [Brucella melitensis bv. 3 str.
           Ether]
 gi|262764962|gb|EEZ10883.1| DNA polymerase III gamma and tau [Brucella melitensis bv. 3 str.
           Ether]
          Length = 602

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/248 (19%), Positives = 89/248 (35%), Gaps = 25/248 (10%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+  ++  GQ      L+   E  +         +  G  G+GKTT A+++AR L
Sbjct: 14  ARKYRPQNFDDLIGQEPMVRTLRNAFETGRIAQAW----MLTGVRGVGKTTTARILARAL 69

Query: 79  GVNFRSTSGPVI--AKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
                +   P I  +  G+    +      DV+ +D      I  +  I+E++ Y  +  
Sbjct: 70  NYKTDTVDQPTIDLSTPGEHCQAIMEGRHVDVIEMDAASHTGIDDIREIIEQVRYRPVSA 129

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT +  +   +  R      L  
Sbjct: 130 RYKVYIIDEVHMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKVPITVLSRCQ-RFDLRR 188

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            E   L   ++R A+   + V D +   IA    G+ R +  +     D A    A ++ 
Sbjct: 189 IESGTLAQHLRRIAEAEKIEVDDASLAMIARAGEGSARDSLSIF----DQAIAHGAGSVI 244

Query: 243 REIADAAL 250
            E   + L
Sbjct: 245 AEAVRSML 252


>gi|302535723|ref|ZP_07288065.1| DNA polymerase III, subunits gamma and tau [Streptomyces sp. C]
 gi|302444618|gb|EFL16434.1| DNA polymerase III, subunits gamma and tau [Streptomyces sp. C]
          Length = 443

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 59/175 (33%), Gaps = 26/175 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP +  E  GQ    + L   +   +         LF GP G GKTT A+++AR
Sbjct: 15  ALYRRYRPESFAEVIGQEHVTAPLMQALRNNRVNHAY----LFSGPRGCGKTTSARILAR 70

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR----DVLFIDEIHRLSII------VEEILY 126
            L        GP     G+  +      +     DV+ ID      +        +    
Sbjct: 71  CLNCE----QGPTPDPCGECQSCRDLARNGPGSIDVIEIDAASHGGVDDARDLREKAFFG 126

Query: 127 PAMEDFQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           PA   +++ ++         G     + V+        I ATT    +   ++ R
Sbjct: 127 PASSRYKIYIIDEAHMVTSAGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSR 181


>gi|239930314|ref|ZP_04687267.1| DNA polymerase III subunits gamma and tau [Streptomyces ghanaensis
           ATCC 14672]
          Length = 430

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 58/173 (33%), Gaps = 22/173 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP +  E  GQ      L+  +   +         LF GP G GKTT A+++AR
Sbjct: 5   ALYRRYRPESFAEVIGQEHVTDPLQQALRNNRVNHAY----LFSGPRGCGKTTSARILAR 60

Query: 77  ELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFIDEIHRLSII------VEEILYPA 128
            L      T  P        DLA         DV+ ID      +        +    PA
Sbjct: 61  CLNCEEGPTPTPCGTCQSCQDLA--RNGPGSIDVIEIDAASHGGVDDARDLREKAFFGPA 118

Query: 129 MEDFQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
              +++ ++         G     + V+        I ATT    +   ++ R
Sbjct: 119 QSRYKIYIIDEAHMVTSAGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSR 171


>gi|153815986|ref|ZP_01968654.1| hypothetical protein RUMTOR_02231 [Ruminococcus torques ATCC 27756]
 gi|317500926|ref|ZP_07959136.1| DNA polymerase III [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089174|ref|ZP_08338077.1| hypothetical protein HMPREF1025_01660 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145846633|gb|EDK23551.1| hypothetical protein RUMTOR_02231 [Ruminococcus torques ATCC 27756]
 gi|316897629|gb|EFV19690.1| DNA polymerase III [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330405951|gb|EGG85477.1| hypothetical protein HMPREF1025_01660 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 539

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 80/230 (34%), Gaps = 21/230 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP    +  GQ    + L+  I+A +         LF G  G GKTT+A++ A+
Sbjct: 5   ALYRKFRPAEFGDVKGQDHIITTLQNQIKANRIGHAY----LFCGTRGTGKTTVAKIFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +         P      ++   +      +V+ ID      +  +  I EE+ Y   E 
Sbjct: 61  AVNCEHPVDGSP--CGECEMCKSIAAGTSMNVIEIDAASNNGVDNIREIREEVTYRPTEG 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT V  +   +  R         
Sbjct: 119 KYKVYIIDEVHMLSIGAFNALLKTLEEPPEYVIFILATTEVHKIPITILSRCQHYDFKRI 178

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
             IE +   +Q       +   D+A   IA  + G+ R A  LL +   F
Sbjct: 179 -SIETITERMQELMDTEHVEAEDKALRYIAKAADGSMRDALSLLDQCIAF 227


>gi|145640255|ref|ZP_01795839.1| Holliday junction DNA helicase B [Haemophilus influenzae R3021]
 gi|145274841|gb|EDK14703.1| Holliday junction DNA helicase B [Haemophilus influenzae 22.4-21]
          Length = 80

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 1/60 (1%)

Query: 1  MMDREGLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
          M++ + ++S      ED     +RP+ L ++ GQ +    + +FI+AAK R +ALDH+L 
Sbjct: 1  MIEADRIISGQAKVDEDVIDRAIRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLI 60


>gi|89069708|ref|ZP_01157044.1| DNA polymerase III subunits gamma and tau [Oceanicola granulosus
           HTCC2516]
 gi|89044654|gb|EAR50765.1| DNA polymerase III subunits gamma and tau [Oceanicola granulosus
           HTCC2516]
          Length = 583

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 64/309 (20%), Positives = 104/309 (33%), Gaps = 31/309 (10%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
            +           RP T  +  GQ      LK    A +         +  G  G GKTT
Sbjct: 2   SDAPAYQVLARKYRPETFADLVGQDAMVRTLKNAFAADRIAQA----FIMTGIRGTGKTT 57

Query: 70  LAQVVARELGV-NFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEIL- 125
            A+++A+ +         GP     G        +E R  DV+ +D   R  +     + 
Sbjct: 58  TARIIAKGMNCVGADGQGGPTTEPCGRCEHCTAIMEGRHVDVMEMDAASRTGVGDIREII 117

Query: 126 ----YPAMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
               Y A        ++ E             ++++        I ATT +  +   +  
Sbjct: 118 DSVHYRAASARYKIYIIDEVHMLSTSAFNALLKTLEEPPEHVKFIFATTEIRKVPVTVLS 177

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R      L   E E +  +++R A   G A+ D+A   I   + G+ R A  LL    D 
Sbjct: 178 RCQ-RFDLRRIEPEVMIALLRRIADAEGAAIADDALALITRAAEGSARDATSLL----DQ 232

Query: 233 AEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEP 292
           A    A   T E   A L      ++  D  DL    ++  +  G    +    A  ++P
Sbjct: 233 AISHGAGETTAEQVRAMLGLADRSRV-LDLFDL----ILKGDAAGALTELAGQYADGADP 287

Query: 293 RDAIEDLIE 301
              + DL E
Sbjct: 288 MAVLRDLAE 296


>gi|302520696|ref|ZP_07273038.1| LOW QUALITY PROTEIN: DNA polymerase III, subunits gamma and tau
           [Streptomyces sp. SPB78]
 gi|302429591|gb|EFL01407.1| LOW QUALITY PROTEIN: DNA polymerase III, subunits gamma and tau
           [Streptomyces sp. SPB78]
          Length = 386

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 58/175 (33%), Gaps = 26/175 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T  E  GQ      L   +   +         LF GP G GKTT A+++AR
Sbjct: 7   ALYRRYRPETFAEVIGQEHVTDPLSQALRNNRVNHAY----LFSGPRGCGKTTSARILAR 62

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR----DVLFIDEIHRLSII------VEEILY 126
            L        GP     G+  +      +     DV+ ID      +        +    
Sbjct: 63  CLNCE----QGPTPTPCGECQSCQDLARNGPGSIDVIEIDAASHGGVDDARDLREKAFFG 118

Query: 127 PAMEDFQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           PA   +++ ++         G     + V+        I ATT    +   ++ R
Sbjct: 119 PASSRYKIYIIDEAHMVTSAGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSR 173


>gi|255994278|ref|ZP_05427413.1| DNA polymerase III, subunit gamma and tau [Eubacterium saphenum
           ATCC 49989]
 gi|255993946|gb|EEU04035.1| DNA polymerase III, subunit gamma and tau [Eubacterium saphenum
           ATCC 49989]
          Length = 473

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 76/249 (30%), Gaps = 40/249 (16%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +A  +  RP T +E  GQ       KVF+   KA        L  G  G GKTTLA+++A
Sbjct: 6   NALYTRFRPNTFDEVIGQENII---KVFLNQLKA-GSVSHAYLLCGIRGTGKTTLARLMA 61

Query: 76  R-----------------------ELGVNFRSTSGPVIAKAGDLAALLT------NLEDR 106
           +                       E  ++             D+  L+       ++ ++
Sbjct: 62  KAVNCLDPQKKPCGACENCRSITEESHMDVIEIDAASNNGVDDVRELIDTVAYPPSVAEK 121

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164
            V  IDE+H LS      L   +E+    +  +       +  K  LSR           
Sbjct: 122 KVYIIDEVHMLSQGAFNALLKTLEEPPSHVIFIFATTDPNKIPKTILSRCMRFDLRRITE 181

Query: 165 LLTNPLQDRFGIP--IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
              + L  R G          E + LK I          A++             T    
Sbjct: 182 ---SDLVKRLGFVCESCSREIEEDALKLIAVNAEGSLRDALSILEQVMAIDEGIITREDV 238

Query: 223 GRLLRRVRD 231
              L  V D
Sbjct: 239 LESLHAVGD 247


>gi|167755136|ref|ZP_02427263.1| hypothetical protein CLORAM_00640 [Clostridium ramosum DSM 1402]
 gi|167705186|gb|EDS19765.1| hypothetical protein CLORAM_00640 [Clostridium ramosum DSM 1402]
          Length = 640

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/284 (16%), Positives = 101/284 (35%), Gaps = 25/284 (8%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     RP+T  E  GQ    + LK  I+  +     + H  LF GP G GKTT+A+++A
Sbjct: 5   ALYRSYRPQTFGEVAGQEHIVTTLKNAIKENR-----ISHAYLFAGPRGTGKTTVAKLLA 59

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAME 130
           + L     +   P   +  +  A+ T  E  DV+ ID      +  +  +++++ Y  + 
Sbjct: 60  KALNC---TGENPPCDQCPNCKAI-TVGEHPDVIEIDAASNNGVDEVRDLIDKVKYAPIN 115

Query: 131 DFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
                 ++ E             ++++   +    + ATT    +   +  R        
Sbjct: 116 GKYKVYIIDEVHMMSTGAFNALLKTLEEPPAHIVFVLATTEPHKILPTIISRCQRFDFKK 175

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
               + +   ++   K         A   +A  + G  R A  +L +   +      +++
Sbjct: 176 VENHDIISR-LEYVLKSENKKYELSALESVAKLAEGGMRDALSILEQCLAYNNELTVESV 234

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETI 285
                  ++             D++ +     N   G + I+ +
Sbjct: 235 NMVYGLLSMDNKISFIKQLLSKDIKGVLTSLDNMLSGSIDIKRL 278


>gi|167470065|ref|ZP_02334769.1| DNA polymerase III, subunits gamma and tau [Yersinia pestis FV-1]
          Length = 583

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 76/242 (31%), Gaps = 53/242 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+ L    
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCET 66

Query: 83  ------------------------RSTSGPVIAKAGDLAALLTNLE------DRDVLFID 112
                                            K  D   LL N++         V  ID
Sbjct: 67  GITATPCGTCANCQEIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS      L   +E+                    +    + ATT    L   +  
Sbjct: 127 EVHMLSRHSFNALLKTLEE------------------PPAHVKFLLATTDPQKLPVTILS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R  +   L   ++E ++  +++      +     A   +A  + G+ R A  L  +    
Sbjct: 169 RC-LQFHLKALDVEQIRAQLEKVLLAEQITSDARALQLLARAADGSMRDALSLTDQAVSM 227

Query: 233 AE 234
            +
Sbjct: 228 GQ 229


>gi|329120112|ref|ZP_08248782.1| DNA polymerase III subunits gamma and tau [Neisseria bacilliformis
           ATCC BAA-1200]
 gi|327463643|gb|EGF09961.1| DNA polymerase III subunits gamma and tau [Neisseria bacilliformis
           ATCC BAA-1200]
          Length = 771

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/304 (15%), Positives = 91/304 (29%), Gaps = 65/304 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T  +  GQ      L+  ++  +     L H  L  G  G+GKTT+A+++A+ L   
Sbjct: 11  RPKTFADLVGQEHVVKALQNALDKGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCE 65

Query: 82  FRS------------------------TSGPVIAKAGDLAALLTNLE------DRDVLFI 111
             +                                  ++  +L N +         V  I
Sbjct: 66  NPAHGEPCGRCPACTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYII 125

Query: 112 DEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+H LS      +   +E+    +  ++      +     LSR                
Sbjct: 126 DEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPITVLSRCLQFVLRNM------- 178

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
                           +     ++      G+     A   +A  + G+ R A  LL + 
Sbjct: 179 --------------TAQQAAAHLEHVLTAEGIPFEKTALQLLARAANGSMRDALSLLDQA 224

Query: 230 RDFAEVAHAKTITREIADAALLRLAIDKM--GFDQLDLRYLTMIARNFGGGPVGIETISA 287
                 + A+   R     A+ +  + ++       +   L   A+      VG +    
Sbjct: 225 IAMGGGSVAEADVR-HMIGAVDKRYLYELITALSAQNGEKLLQKAQEMAERAVGFDN--- 280

Query: 288 GLSE 291
            L E
Sbjct: 281 ALGE 284


>gi|318081362|ref|ZP_07988694.1| DNA polymerase III subunits gamma and tau [Streptomyces sp.
           SA3_actF]
          Length = 412

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 58/175 (33%), Gaps = 26/175 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T  E  GQ      L   +   +         LF GP G GKTT A+++AR
Sbjct: 5   ALYRRYRPETFAEVIGQEHVTDPLSQALRNNRVNHAY----LFSGPRGCGKTTSARILAR 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR----DVLFIDEIHRLSII------VEEILY 126
            L        GP     G+  +      +     DV+ ID      +        +    
Sbjct: 61  CLNCE----QGPTPTPCGECQSCQDLARNGPGSIDVIEIDAASHGGVDDARDLREKAFFG 116

Query: 127 PAMEDFQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           PA   +++ ++         G     + V+        I ATT    +   ++ R
Sbjct: 117 PASSRYKIYIIDEAHMVTSAGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSR 171


>gi|289424444|ref|ZP_06426227.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           SK187]
 gi|289155141|gb|EFD03823.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           SK187]
          Length = 967

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/237 (19%), Positives = 74/237 (31%), Gaps = 23/237 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T +E  G+      LK  I   +         LF GP G GKTT A+++AR
Sbjct: 119 ALYRRYRPETFDEVIGEDHVIEPLKRAILNNRVNHAY----LFSGPRGCGKTTTARILAR 174

Query: 77  ELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAM 129
            L      T  P        DLA         DV+ ID      +     + E   +  +
Sbjct: 175 ALNCEQGPTPTPCGTCQSCRDLAC--GGPGSIDVIEIDAASHGGVDDARDLRERAFFAPV 232

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                  ++ E             + V+        I ATT    +   ++ R       
Sbjct: 233 HSRYKIYIIDEAHMVTPQGFNALLKLVEEPPPHVKFIFATTEPEKVIGTIRSR-THHYPF 291

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                + L   +       G+ V       +     G+ R +  +L ++   A   H
Sbjct: 292 RLVPPKVLVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVLDQLLGGAADGH 348


>gi|237739475|ref|ZP_04569956.1| DNA polymerase III gamma and tau [Fusobacterium sp. 2_1_31]
 gi|229423083|gb|EEO38130.1| DNA polymerase III gamma and tau [Fusobacterium sp. 2_1_31]
          Length = 485

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 52/242 (21%), Positives = 100/242 (41%), Gaps = 22/242 (9%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVAREL 78
              RP +  E +G+ E   +LK+ ++      +++ H  LF GP G+GKTT+A+++A+ +
Sbjct: 7   RKYRPSSFSEVSGENEIVKSLKLSLK-----NKSMAHAYLFSGPRGVGKTTIARLIAKGV 61

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQ 133
                   G    +  +  A+       D++ ID      I  +  + E+I Y  +E  +
Sbjct: 62  NCLNLGEDGEPCNECKNCKAINEG-RFSDLIEIDAASNRSIDEIRSLKEKINYQPVEGLK 120

Query: 134 LDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
              ++ E             ++++   S    I ATT +  +   +  R          +
Sbjct: 121 KVYIIDEAHMLTKEAFNALLKTLEEPPSHVMFILATTELDKILPTIISRCQ-RYDFKALD 179

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           IED+K+ ++   K   L+++DE    I   S G+ R +  +L R+   A          E
Sbjct: 180 IEDMKSGLKHILKEENLSMSDEVYPLIYENSSGSMRDSISILERLIVTANGNEINLKIAE 239

Query: 245 IA 246
             
Sbjct: 240 DT 241


>gi|195122172|ref|XP_002005586.1| GI18990 [Drosophila mojavensis]
 gi|193910654|gb|EDW09521.1| GI18990 [Drosophila mojavensis]
          Length = 752

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 59/271 (21%), Positives = 97/271 (35%), Gaps = 24/271 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  EA   LK  +E  K          +    VL VGPPG GKT LA+ VA E 
Sbjct: 315 TFDDVKGCDEAKQELKEVVEFLKNPDKFSNLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 374

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F   +GP          A  +  L    + R   V+FIDEI  +       +     
Sbjct: 375 NVPFFHAAGPEFDEVLVGQGARRVRDLFKAAKARAPCVIFIDEIDSVGAKRTNSVLHPYA 434

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
           +  ++ ++ E               ++ AT R   L   L    RF + + ++  +    
Sbjct: 435 NQTINQLLSEMDGFHQNAG----VIVLGATNRRDDLDQALLRPGRFDVEVVVSTPDFTGR 490

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAM-RSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           K I+     L  +   D     +A   S  T      ++ +    A +  A+T+  +  +
Sbjct: 491 KEIL--SLYLEKILHDDVDLDMLARGTSGFTGADLENMINQAALRAAIDGAETVNMKHLE 548

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
            A  ++ +      +L       I     GG
Sbjct: 549 TARDKVLMGPERKARLPDEEANTITAYHEGG 579


>gi|68250239|ref|YP_249351.1| DNA polymerase III subunits gamma and tau [Haemophilus influenzae
           86-028NP]
 gi|68058438|gb|AAX88691.1| DNA polymerase III subunit gamma/tau [Haemophilus influenzae
           86-028NP]
          Length = 688

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 51/282 (18%), Positives = 88/282 (31%), Gaps = 65/282 (23%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T  +  GQ    + L     A   +   L H  LF G  G+GKT++A++ A+ L   
Sbjct: 11  RPKTFADVVGQEHIITAL-----ANGLKDNRLHHAYLFSGTRGVGKTSIARLFAKGLNCV 65

Query: 82  F------------------------RSTSGPVIAKAGDLAALLTNLEDRDVL------FI 111
                                             K  D   LL N++ + V+       I
Sbjct: 66  HGVTATPCGECENCKTIEQGNFIDLIEIDAASRTKVEDTRELLDNVQYKPVVGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSRHSFNALLKTLEE------------------PPEYVKFLLATTDPQKLPVTIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L   +   +   +        +   + A  ++A  ++G+ R +  L     D
Sbjct: 168 SRC-LQFHLKALDETQISQHLAHILTQENIPFEEPALVKLAKAAQGSIRDSLSL----TD 222

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIAR 273
            A     + +T  +    L  L       D   +  L  + +
Sbjct: 223 QAIAMGDRQVTNNVVSNMLGLLD------DNYSVDILYALHQ 258


>gi|58039074|ref|YP_191038.1| DNA polymerase III subunits gamma and tau [Gluconobacter oxydans
           621H]
 gi|58001488|gb|AAW60382.1| DNA polymerase III subunit gamma/tau [Gluconobacter oxydans 621H]
          Length = 652

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 63/228 (27%), Gaps = 43/228 (18%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L +   +         RP+T ++  GQ      L+   E  +         +  G  G+G
Sbjct: 30  LPAAEATPYRVLARKYRPQTFDDLIGQDSLVRILRRAFELKRVAHA----FMLTGVRGVG 85

Query: 67  KTTLAQVVARELGV-----------------------------NFRSTSGPVIAKAGDLA 97
           KTT A+++AR L                               +             D+ 
Sbjct: 86  KTTTARIIARALNCVGPDGKGGPTADPCGVCPNCTAILADRHPDVLEMDAASRTGVDDVR 145

Query: 98  ALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAMED--FQLDLMVGEGPSARSVKI 149
            ++     R       V  IDE+H LS      L   +E+   Q+  +       +    
Sbjct: 146 EIIEATRFRPMQARMKVFIIDEVHMLSRNAFNALLKTLEEPPPQVTFIFATTELRKVPVT 205

Query: 150 NLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
            LSR            L         +         ED   ++ R A 
Sbjct: 206 VLSRCQRFDLRRVPQSLLAGHFHNIAVKEGATL--SEDALALIARAAD 251


>gi|19705135|ref|NP_602630.1| DNA polymerase III subunits gamma and tau [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
 gi|296328310|ref|ZP_06870839.1| DNA polymerase III gamma and tau [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|19713068|gb|AAL93929.1| DNA polymerase III subunits gamma and tau [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
 gi|296154614|gb|EFG95402.1| DNA polymerase III gamma and tau [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 484

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 100/242 (41%), Gaps = 22/242 (9%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVAREL 78
              RP +  E +G+ E   +LK+ ++      +++ H  LF GP G+GKTT+A+++A+ +
Sbjct: 7   RKYRPSSFSEVSGENEIVKSLKLSLK-----NKSMAHAYLFSGPRGVGKTTIARLIAKGV 61

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQ 133
                  +G    +  +  A+       D++ ID      I  +  + E+I Y  +E  +
Sbjct: 62  NCLNLKETGEPCNECKNCKAINEG-RFSDLIEIDAASNRSIDEIRSLKEKINYQPVEGLK 120

Query: 134 LDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
              ++ E             ++++   +    I ATT +  +   +  R          +
Sbjct: 121 KVYIIDEAHMLTKEAFNALLKTLEEPPAHVMFILATTELEKILPTIISRCQ-RYDFKPLD 179

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +E++K  ++   K   L++TD+    I   S G+ R +  +L R+   A          E
Sbjct: 180 LEEMKLGLEHILKEENLSMTDDVYPVIYENSSGSMRDSISILERLIVTANGEEIDLKIAE 239

Query: 245 IA 246
             
Sbjct: 240 DT 241


>gi|285017408|ref|YP_003375119.1| DNA polymerase III tau and gamma subunits protein [Xanthomonas
           albilineans GPE PC73]
 gi|283472626|emb|CBA15131.1| probable dna polymerase III tau and gamma subunits protein
           [Xanthomonas albilineans]
          Length = 611

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/241 (17%), Positives = 74/241 (30%), Gaps = 53/241 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN- 81
           RP+   E  GQ      L   +++ +         LF G  G+GKTT+A++ A+ L    
Sbjct: 11  RPKRFAELVGQEHVVRALTNALDSGRVHHA----FLFTGTRGVGKTTIARIFAKSLNCEQ 66

Query: 82  -----------------------FRSTSGPVIAKAGDLAALLTNLE------DRDVLFID 112
                                               D+  ++ N +         V  ID
Sbjct: 67  GTSADPCGKCAACLDIDAGRYIDLLEIDAASNTGVDDVREVIENAQYMPSRGKFKVYLID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS      L   +E+                         + ATT    L   +  
Sbjct: 127 EVHMLSKAAFNALLKTLEE------------------PPEHVKFLLATTDPQKLPVTVLS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R  +   L   +   ++  + +      + V   A  ++A  + G+ R    LL +   +
Sbjct: 169 RC-LQFNLKRLDEMQIQGQMTKILAAEQIEVDASAIVQLAKAADGSLRDGLSLLDQAIAY 227

Query: 233 A 233
           A
Sbjct: 228 A 228


>gi|325186526|emb|CCA21065.1| replication factor C subunit 5 putative [Albugo laibachii Nc14]
          Length = 354

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/238 (16%), Positives = 74/238 (31%), Gaps = 38/238 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP  +++        S +   +E      + L H+LF GPPG GKT++   +AR
Sbjct: 33  PWVEKYRPSRMDDIIAHKGIVSTINQLVE-----KQKLPHLLFYGPPGTGKTSMIIAIAR 87

Query: 77  ------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-DVLFIDEIHRLSIIVEE 123
                       EL  +       V  +  + A           ++ +DE   ++   + 
Sbjct: 88  KIYGKHFSSMVLELNASDDRGIDVVRNQIKEFAGTKKLFSSGAKLIILDEADSMTNDAQF 147

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
            L   +E +                              V  +   LQ R  +  R    
Sbjct: 148 SLRRVIEKYT------------------KHTRFCLICNYVSKIIPALQSRC-MRFRFAPL 188

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR-DFAEVAHAKT 240
            +  +   V++   L  + +TD     +    +G  R    +L+     +A V     
Sbjct: 189 GVTQVGDRVKQIRDLEKIDLTDGGFDALMQLGKGDMRRILNILQAASLAYATVNEENV 246


>gi|304440577|ref|ZP_07400463.1| DNA polymerase III, gamma/tau subunit DnaX [Peptoniphilus duerdenii
           ATCC BAA-1640]
 gi|304370953|gb|EFM24573.1| DNA polymerase III, gamma/tau subunit DnaX [Peptoniphilus duerdenii
           ATCC BAA-1640]
          Length = 589

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 83/229 (36%), Gaps = 23/229 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     R RT +E  GQ +  +++K      + +   + H  +F G  G GKT+ A+++A
Sbjct: 4   ALYRKYRSRTFDEVVGQDQVINSIK-----YQVKNSTVSHAYIFSGTRGTGKTSTAKILA 58

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAME 130
           R +         P   +     ++L    + DV+ +D      +  +  + E+  YP   
Sbjct: 59  RAVNCEHPIDGNP-CNECETCKSILRGT-NLDVVEMDAASNNGVDDIRDLREKAFYPPST 116

Query: 131 DFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
                 ++ E             + ++        I ATT +  +   +  R        
Sbjct: 117 SKYKVYIIDEVHMLSKGAFNALLKILEEPPKHLIFILATTEIERVPQTILSRTQRYTFKR 176

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
              I+ +   +       G ++ +     IA  + G+ R A  LL RV 
Sbjct: 177 I-SIDTISKNISEILAKEGKSIDEAGIDLIAQMADGSMRDAVSLLDRVV 224


>gi|294783460|ref|ZP_06748784.1| DNA polymerase III, gamma/tau subunit [Fusobacterium sp. 1_1_41FAA]
 gi|294480338|gb|EFG28115.1| DNA polymerase III, gamma/tau subunit [Fusobacterium sp. 1_1_41FAA]
          Length = 482

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 52/242 (21%), Positives = 100/242 (41%), Gaps = 22/242 (9%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVAREL 78
              RP +  E +G+ E   +LK+ ++      +++ H  LF GP G+GKTT+A+++A+ +
Sbjct: 7   RKYRPSSFSEVSGENEIVKSLKLSLK-----NKSMAHAYLFSGPRGVGKTTIARLIAKGV 61

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQ 133
                   G    +  +  A+       D++ ID      I  +  + E+I Y  +E  +
Sbjct: 62  NCLNLGEDGEPCNECKNCKAINEG-RFSDLIEIDAASNRSIDEIRSLKEKINYQPVEGLK 120

Query: 134 LDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
              ++ E             ++++   S    I ATT +  +   +  R          +
Sbjct: 121 KVYIIDEAHMLTKEAFNALLKTLEEPPSHVMFILATTELDKILPTIISRCQ-RYDFKALD 179

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           IED+K+ ++   K   L+++DE    I   S G+ R +  +L R+   A          E
Sbjct: 180 IEDMKSGLKHILKEENLSMSDEVYPLIYENSSGSMRDSISILERLIVTANGNEINLKIAE 239

Query: 245 IA 246
             
Sbjct: 240 DT 241


>gi|256070834|ref|XP_002571747.1| fidgetin like-1 [Schistosoma mansoni]
 gi|238656894|emb|CAZ27977.1| fidgetin like-1 [Schistosoma mansoni]
          Length = 453

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/217 (22%), Positives = 76/217 (35%), Gaps = 31/217 (14%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
            S+   QE   + +LRP   + F G        K                L  GPPG GK
Sbjct: 186 FSKKTLQEIVILPMLRP---DLFVG---LRGPPKGL--------------LLFGPPGTGK 225

Query: 68  TTLAQVVARELGVNFRSTSGPVI------AKAGDLAAL--LTNLEDRDVLFIDEIHRLSI 119
           T + + +A +    F S S   +           + AL  +  +    V+FIDE+  L  
Sbjct: 226 TLIGKCIASQSNSTFFSISASSLTSKWVGEGEKLVRALFSIARIHQPSVIFIDEVDSLLT 285

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
              E  + +    + + +V       +      R   I AT R   L    + RF   + 
Sbjct: 286 QRSETEHESSRRIKTEFLVQLDGITTNDD---ERILFIGATNRPQELDEAARRRFVKRLY 342

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSR 216
           +        K IVQR  +     + +E   +IA R+ 
Sbjct: 343 IPLPTRSARKQIVQRLLRQNHHTLKEEDFWDIADRAN 379


>gi|169598013|ref|XP_001792430.1| hypothetical protein SNOG_01804 [Phaeosphaeria nodorum SN15]
 gi|160707641|gb|EAT91453.2| hypothetical protein SNOG_01804 [Phaeosphaeria nodorum SN15]
          Length = 376

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 75/223 (33%), Gaps = 38/223 (17%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR-- 76
           +   RP  L++  G  E    LK+      A+   + H++  G PG+GKTT    +AR  
Sbjct: 53  VEKYRPVYLDDVVGNTETIERLKII-----AKDGNMPHMIISGMPGIGKTTSILCLARQL 107

Query: 77  ---ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDV---------LFIDEIHRLSIIVEEI 124
                       +         +   +     + V         + +DE   ++   ++ 
Sbjct: 108 LGDAYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRQKLVILDEADSMTSGAQQA 167

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           L   ME +                   +RF    A  +   +  PLQ R  I       +
Sbjct: 168 LRRTMEIYSAT----------------TRFAF--ACNQSNKIIEPLQSRCAILRYARLTD 209

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
            + ++ I+Q   +   +  +D+    +   + G  R A   L+
Sbjct: 210 AQVVRRIMQ-VIEAEDVKYSDDGLAALVFSAEGDMRQAINNLQ 251


>gi|294494914|ref|YP_003541407.1| Replication factor C [Methanohalophilus mahii DSM 5219]
 gi|292665913|gb|ADE35762.1| Replication factor C [Methanohalophilus mahii DSM 5219]
          Length = 343

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 54/256 (21%), Positives = 88/256 (34%), Gaps = 64/256 (25%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           +D      RP+ L +F G  +A S ++  + A K     L H++  GP G GK +    +
Sbjct: 2   KDLWTLKYRPQELGDFVGNEKAVSIMQHLVSAGK-----LPHLVIHGPAGSGKASAVFAL 56

Query: 75  AR-----ELGVNFRSTSG-------------------------------PVIAKAGDLAA 98
           AR         NF   +                                 VI+   DL  
Sbjct: 57  ARGIYGDNFEHNFTYFNASDFFDQGKRYLVRDKRFVRILGTDDPKKIRSSVISIFKDLVN 116

Query: 99  LLTNLE----DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRF 154
              ++     D  ++F+D    L+   +  L   ME +                      
Sbjct: 117 EYASMGSIDADYKIIFVDSAESLNESAQHALRRIMERYSRT------------------C 158

Query: 155 TLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMR 214
             I +TT+   L +PL+ R G+ +   +   E+L + +   A   GLA   EA   +A  
Sbjct: 159 RFIFSTTQPSRLISPLRSR-GLQLFFTYVSDEELVSFLGSVADSEGLAYDPEALGGLARH 217

Query: 215 SRGTPRIAGRLLRRVR 230
            +G    A RLL+   
Sbjct: 218 CKGNVDCALRLLQSAA 233


>gi|161621801|ref|YP_054923.2| DNA polymerase III subunits gamma and tau [Propionibacterium acnes
           KPA171202]
          Length = 900

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/237 (19%), Positives = 74/237 (31%), Gaps = 23/237 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T +E  G+      LK  I   +         LF GP G GKTT A+++AR
Sbjct: 52  ALYRRYRPETFDEVIGEDHVIEPLKRAILNNRVNHAY----LFSGPRGCGKTTTARILAR 107

Query: 77  ELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAM 129
            L      T  P        DLA         DV+ ID      +     + E   +  +
Sbjct: 108 ALNCEQGPTPTPCGTCQSCRDLAC--GGPGSIDVIEIDAASHGGVDDARDLRERAFFAPV 165

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                  ++ E             + V+        I ATT    +   ++ R       
Sbjct: 166 HSRYKIYIIDEAHMVTPQGFNALLKLVEEPPPHVKFIFATTEPEKVIGTIRSR-THHYPF 224

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                + L   +       G+ V       +     G+ R +  +L ++   A   H
Sbjct: 225 RLVPPKVLVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVLDQLLGGAADGH 281


>gi|12847419|dbj|BAB27561.1| unnamed protein product [Mus musculus]
          Length = 349

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 76/227 (33%), Gaps = 38/227 (16%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   +   RP  L E  G  +  S L+VF     AR   + +++  GPPG GKTT    +
Sbjct: 30  ELPWVEKYRPLKLNEIVGNEDTVSRLEVF-----AREGNVPNIIIAGPPGTGKTTSILCL 84

Query: 75  ARE------------LGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIHRLSII 120
           AR             L  +       V  K    A     L      ++ +DE   ++  
Sbjct: 85  ARALLGPALKDAVWRLNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDG 144

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            ++ L   ME +                   +RF    A      +  P+Q R  +    
Sbjct: 145 AQQALRRTMEIYSKT----------------TRF--ALACNASDKIIEPIQSRCAVLRYT 186

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
              + + L   +    +   +  TD+    I   ++G  R A   L+
Sbjct: 187 KLTDAQVLTR-LMNVIEKEKVPYTDDGLEAIIFTAQGDMRQALNNLQ 232


>gi|332523535|ref|ZP_08399787.1| DNA polymerase III, subunit gamma and tau [Streptococcus porcinus
           str. Jelinkova 176]
 gi|332314799|gb|EGJ27784.1| DNA polymerase III, subunit gamma and tau [Streptococcus porcinus
           str. Jelinkova 176]
          Length = 560

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 46/256 (17%), Positives = 88/256 (34%), Gaps = 21/256 (8%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     R +T  E  GQ    + LK  + + K         LF GP G GKT+ A++ A+
Sbjct: 4   ALYRKYRSQTFAEMVGQKVVSTTLKQAVSSGKISHAY----LFSGPRGTGKTSAAKIFAK 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +    +    P      D+   +TN    DV+ ID      +  +  I ++  Y     
Sbjct: 60  AMNCPNQVDGEPCNHC--DICRDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRA 117

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT +  +   +  R       + 
Sbjct: 118 TYKVYIIDEVHMLSSGAFNALLKTLEEPSQNVVFILATTELHKIPATILSRVQRFEFKSI 177

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            + + + + +    +   +   + A   IA R+ G  R A  +L +    +         
Sbjct: 178 KQND-ISSHLAWILETEEIPYQEGALDLIARRAEGGMRDALSILDQALSLSSENQVDLAI 236

Query: 243 REIADAALLRLAIDKM 258
            E    ++   A+D  
Sbjct: 237 AEEITGSISLAALDTY 252


>gi|313772740|gb|EFS38706.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL074PA1]
 gi|313832224|gb|EFS69938.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL007PA1]
 gi|314976987|gb|EFT21082.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL045PA1]
 gi|327331270|gb|EGE73009.1| DNA polymerase III subunit gamma [Propionibacterium acnes HL096PA2]
 gi|327450460|gb|EGE97114.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL043PA2]
 gi|328761179|gb|EGF74721.1| DNA polymerase III subunit gamma [Propionibacterium acnes HL099PA1]
          Length = 948

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/237 (19%), Positives = 74/237 (31%), Gaps = 23/237 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T +E  G+      LK  I   +         LF GP G GKTT A+++AR
Sbjct: 100 ALYRRYRPETFDEVIGEDHVIEPLKRAILNNRVNHAY----LFSGPRGCGKTTTARILAR 155

Query: 77  ELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAM 129
            L      T  P        DLA         DV+ ID      +     + E   +  +
Sbjct: 156 ALNCEQGPTPTPCGTCQSCRDLAC--GGPGSIDVIEIDAASHGGVDDARDLRERAFFAPV 213

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                  ++ E             + V+        I ATT    +   ++ R       
Sbjct: 214 HSRYKIYIIDEAHMVTPQGFNALLKLVEEPPPHVKFIFATTEPEKVIGTIRSR-THHYPF 272

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                + L   +       G+ V       +     G+ R +  +L ++   A   H
Sbjct: 273 RLVPPKVLVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVLDQLLGGAADGH 329


>gi|302808211|ref|XP_002985800.1| hypothetical protein SELMODRAFT_123078 [Selaginella moellendorffii]
 gi|300146307|gb|EFJ12977.1| hypothetical protein SELMODRAFT_123078 [Selaginella moellendorffii]
          Length = 345

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 82/245 (33%), Gaps = 41/245 (16%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           ++     +   RP+ +++   Q E    L   +E        L H+LF GPPG GKT+ A
Sbjct: 1   MAPSQQWVEKYRPKQVKDVAHQDEVVRTLANALETG-----NLPHLLFYGPPGTGKTSTA 55

Query: 72  QVVAR-------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD-------VLFI 111
             V R             EL  +       V  K  D AA+       D       V+ +
Sbjct: 56  LAVTRELFGPQLYKTRVLELNASDDRGINVVRTKIKDFAAVAVGRGVSDYPCPPFKVIIL 115

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE   ++   +  L   ME +       +      +   +SR            +  PL 
Sbjct: 116 DEADSMTEDAQNALRRTMETYS------KVTRFCFICNYISRL--CKTIILCFRIIEPLA 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R         +  + L   V  G ++  +  ++E     +       R++   LRR   
Sbjct: 168 SRCA------KFRFKSLNQDVMHG-RILHI-CSEEGVQMGSEALATLSRVSEGDLRRAIT 219

Query: 232 FAEVA 236
           + + A
Sbjct: 220 YLQSA 224


>gi|270263611|ref|ZP_06191880.1| DNA polymerase III subunits gamma and tau [Serratia odorifera
           4Rx13]
 gi|270042495|gb|EFA15590.1| DNA polymerase III subunits gamma and tau [Serratia odorifera
           4Rx13]
          Length = 649

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 53/306 (17%), Positives = 101/306 (33%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKTT+A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTTIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGQCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++   S    + ATT    L   +  R  +   L   +++ +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPSHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVDQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++   +   +     A   +A  + G+ R A  L     D A       +T      
Sbjct: 184 RNQLETVLQAENITSDQRALQLLARAADGSMRDALSL----TDQAIAMGQGQVTTATVSQ 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L       D+  L  L  +    G   +     +A      + +       + +  
Sbjct: 240 MLGTLD------DEQPLAILEALVSADGEKVMAQVAQAASRGVDWENLLIETLALLHRIA 293

Query: 309 FIQRTP 314
            +Q  P
Sbjct: 294 MVQLLP 299


>gi|261200183|ref|XP_002626492.1| activator 1 subunit 3 [Ajellomyces dermatitidis SLH14081]
 gi|239593564|gb|EEQ76145.1| activator 1 subunit 3 [Ajellomyces dermatitidis SLH14081]
 gi|239607557|gb|EEQ84544.1| replication factor C [Ajellomyces dermatitidis ER-3]
 gi|327357386|gb|EGE86243.1| replication factor C [Ajellomyces dermatitidis ATCC 18188]
          Length = 404

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 72/210 (34%), Gaps = 33/210 (15%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
                   +   RP TLE+ +G  +    +  FI+  +     L H+L  GPPG GKT+ 
Sbjct: 40  EAEDNLPWVEKYRPNTLEDVSGHQDIIGTINRFIDTNR-----LPHLLLYGPPGTGKTST 94

Query: 71  AQVVAR-------------------ELGVNFRSTSGPVIAKAGDL------AALLTNLED 105
              +AR                   + G++         A    +      A   + L  
Sbjct: 95  ILALARRIYGVKNMRQMVLELNASDDRGIDVVRDQIKTFASTKQIFSMAPAAKAESTLGA 154

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQLD--LMVGEGPSARSVKINLSRFTLIAATTRV 163
             ++ +DE   ++ + +  L   ME +  +    +    S +     LSR T    +   
Sbjct: 155 FKLIILDEADAMTAVAQMALRRIMEKYTANARFCIIANYSHKLSPALLSRCTRFRFSPLK 214

Query: 164 GLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
                 L D+  I       + E + ++V+
Sbjct: 215 EKDIRVLVDQV-IETEQVRIQPEAIDSLVK 243


>gi|221640167|ref|YP_002526429.1| DNA polymerase III subunits gamma and tau [Rhodobacter sphaeroides
           KD131]
 gi|221160948|gb|ACM01928.1| DNA polymerase III, subunits gamma and tau [Rhodobacter sphaeroides
           KD131]
          Length = 582

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 57/266 (21%), Positives = 90/266 (33%), Gaps = 27/266 (10%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+T  +  GQ      LK    A +         +  G  G+GKTT A+++A+ L
Sbjct: 13  ARKYRPQTFADLIGQDAMVRTLKNAFAADRIAHA----FVMTGVRGVGKTTTARIIAKGL 68

Query: 79  GV-NFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEIL-----YPAME 130
                  T GP     G         E R  DV+ +D   R  +     +     Y A  
Sbjct: 69  NCVGPDGTGGPTTEPCGQCEPCRAISEGRHVDVMEMDAASRTGVGDIREIIDSVHYRAAS 128

Query: 131 DFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
                 ++ E             ++++   +    I ATT +  +   +  R      L 
Sbjct: 129 ARYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLSRCQ-RFDLK 187

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
             E E +   + R A   G  +T +A   I   + G+ R A  L+    D A    A   
Sbjct: 188 RIEPEVMMAHLARVAGKEGAELTRDALALITRAAEGSVRDAMSLM----DQAIAHGAGET 243

Query: 242 TREIADAALLRLAIDKMGFDQLDLRY 267
           T +   A L      ++  D  DL  
Sbjct: 244 TADQVRAMLGLADRGRV-LDLFDLVM 268


>gi|290890959|ref|ZP_06554023.1| hypothetical protein AWRIB429_1413 [Oenococcus oeni AWRIB429]
 gi|290479358|gb|EFD88018.1| hypothetical protein AWRIB429_1413 [Oenococcus oeni AWRIB429]
          Length = 594

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 77/225 (34%), Gaps = 40/225 (17%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE----L 78
           RPRT  +  GQ      L+  +++ K         LF GP G GKT++A++ ARE     
Sbjct: 10  RPRTFSDLVGQTVIAQTLENALKSNKVGHAY----LFAGPRGTGKTSVAKIFAREIEGIP 65

Query: 79  GVNFRSTSGPVIA-------KAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEIL 125
             N R +   +I           ++  L              +  IDE+H LS      L
Sbjct: 66  DDNNRESFSDIIEIDAASNNGVDEIRNLRDAANYAPIEYQFKIYIIDEVHMLSTGAFNAL 125

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
              +E+                    ++   I ATT    +   +  R       +  ++
Sbjct: 126 LKTIEE------------------PPAQVKFILATTEPQKIPATILSRVQ-RFDFHRIDV 166

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
           + +   ++       +A    A   +A  S G  R A  +L +  
Sbjct: 167 DQIVKRLEFVLDDQKIAYDPAALKIVANASDGGLRDALSILDQAV 211


>gi|257899194|ref|ZP_05678847.1| DNA directed DNA polymerase [Enterococcus faecium Com15]
 gi|257837106|gb|EEV62180.1| DNA directed DNA polymerase [Enterococcus faecium Com15]
          Length = 581

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 52/294 (17%), Positives = 100/294 (34%), Gaps = 30/294 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           R +  E+  GQ      LK  I + K         LF GP G GKT+ A++ A+ +    
Sbjct: 11  RSQRFEDIVGQKAVTQTLKNAIVSHKTSHAY----LFTGPRGTGKTSAAKIFAKAINC-P 65

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP---------AMEDFQ 133
            S  G    +     ++    ++ DV+ ID      +     +           A + + 
Sbjct: 66  NSKDGEPCNECKMCRSITAGTQE-DVIEIDAASNNGVEEIRFIRDRANYAPTKAAYKVYI 124

Query: 134 LDLMVGEGPSA-----RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +D +      A     ++++        I ATT    +   +  R            + +
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPKESVIFILATTEPHKIPATIISRTQRFDFKRINTAD-I 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              ++   K + ++    A   IA  + G  R A  +L +   F+E     TIT +    
Sbjct: 184 VEHLEFILKESTISYEPAALNVIARSAEGGMRDALSILDQAISFSE----GTITLDD--- 236

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
                    +  + +D      + +        +  I A   E R  +ED+++ 
Sbjct: 237 --AMQVTGSLTDEMMDSYLSACVKKEVPEALEALNQILAAGKESRRFLEDMLQY 288


>gi|257438605|ref|ZP_05614360.1| DNA polymerase III, gamma/tau subunit [Faecalibacterium prausnitzii
           A2-165]
 gi|257198949|gb|EEU97233.1| DNA polymerase III, gamma/tau subunit [Faecalibacterium prausnitzii
           A2-165]
          Length = 625

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/235 (18%), Positives = 80/235 (34%), Gaps = 21/235 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  E+   Q    + L+  I   +         LF G  G GKTT A++ A+ +    
Sbjct: 17  RPQRFEDVVAQRGIVTALRNQIATGRVGHAY----LFTGVRGTGKTTCAKIFAKAVNCLH 72

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P      ++   + N    DV+ +D      +  +  + +E  Y          +
Sbjct: 73  PQNGDP--CGECEICRGIDNGSILDVVEMDAASNNGVDDIRDLRDETAYTPSACHYKVYI 130

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++   +    I ATT +  +   +  R            ED+
Sbjct: 131 IDEVHMLSTAAFNALLKTLEEPPAHVIFILATTEIQKVPATILSRCQRYDFTRI-GPEDI 189

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
              V+  A   GL ++ E A  I+  + G  R A  +L           A  + R
Sbjct: 190 AQRVEYIAGQEGLELSGEGAELISRLADGAMRDALSILDTCAGVTAKIDADVVRR 244


>gi|313834284|gb|EFS71998.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL056PA1]
 gi|314974379|gb|EFT18474.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL053PA1]
 gi|314985375|gb|EFT29467.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL005PA1]
 gi|315097214|gb|EFT69190.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL038PA1]
 gi|327447352|gb|EGE94006.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL043PA1]
          Length = 982

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/237 (19%), Positives = 74/237 (31%), Gaps = 23/237 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T +E  G+      LK  I   +         LF GP G GKTT A+++AR
Sbjct: 134 ALYRRYRPETFDEVIGEDHVIEPLKRAILNNRVNHAY----LFSGPRGCGKTTTARILAR 189

Query: 77  ELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAM 129
            L      T  P        DLA         DV+ ID      +     + E   +  +
Sbjct: 190 ALNCEQGPTPTPCGTCQSCRDLAC--GGPGSIDVIEIDAASHGGVDDARDLRERAFFAPV 247

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                  ++ E             + V+        I ATT    +   ++ R       
Sbjct: 248 HSRYKIYIIDEAHMVTPQGFNALLKLVEEPPPHVKFIFATTEPEKVIGTIRSR-THHYPF 306

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                + L   +       G+ V       +     G+ R +  +L ++   A   H
Sbjct: 307 RLVPPKVLVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVLDQLLGGAADGH 363


>gi|296116792|ref|ZP_06835398.1| DNA polymerase III subunits gamma and tau [Gluconacetobacter
           hansenii ATCC 23769]
 gi|295976593|gb|EFG83365.1| DNA polymerase III subunits gamma and tau [Gluconacetobacter
           hansenii ATCC 23769]
          Length = 690

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 50/276 (18%), Positives = 79/276 (28%), Gaps = 58/276 (21%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
              +         RP T ++  GQ          +  A A        +  G  G+GKTT
Sbjct: 43  EKAAPYRVLARKYRPTTFDDLIGQDTTV----RILRNAFALGRVAHAFMLTGVRGVGKTT 98

Query: 70  LAQVVARELGV-----------------------------NFRSTSGPVIAKAGDLAALL 100
            A+++AR L                               +             D+  ++
Sbjct: 99  TARIIARALNCTGPDGQGGPTADPCGVCPNCVAILADRHPDVMEMDAASRTGVDDVREII 158

Query: 101 TNLEDRDV------LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRF 154
            +   R +        IDE+H LS      L   +E+                    S+ 
Sbjct: 159 DSTRFRPIQGRMKVFIIDEVHMLSRNAFNALLKTLEE------------------PPSQV 200

Query: 155 TLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMR 214
           T I ATT +  +   +  R      L     + L     R A   G+A   +A   IA  
Sbjct: 201 TFIFATTELRKVPVTVLSRCQ-TFDLRRVPQDMLAAHFGRVAAAEGVAFAPDALALIARA 259

Query: 215 SRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           + G+ R    LL +      +           DA L
Sbjct: 260 ADGSVRDGLSLLDQAIAQGTLDGEGQGDAAPIDATL 295


>gi|262277951|ref|ZP_06055744.1| DNA polymerase III subunit gamma/tau [alpha proteobacterium
           HIMB114]
 gi|262225054|gb|EEY75513.1| DNA polymerase III subunit gamma/tau [alpha proteobacterium
           HIMB114]
          Length = 553

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/257 (17%), Positives = 80/257 (31%), Gaps = 56/257 (21%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
             RP+  +E  GQ        + I+ A       +  L  G  G GKTT A+++A+ +  
Sbjct: 11  RYRPQKFQELIGQDSMV----ISIQNAIKLKRIPNAYLLTGIRGTGKTTTARIIAKAINC 66

Query: 81  NFRSTS---------------------------GPVIAKAGDLAALLTNLE------DRD 107
                S                                   D+  +L   +      +  
Sbjct: 67  KVDFASDQKCSEGDFCHCESITNSNHIDILEMDAASKTGIDDIREILEASKYHPSTAEYK 126

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           V  IDE+H LS      L   +E+                         I ATT V  + 
Sbjct: 127 VFIIDEVHMLSKQAFNALLKTLEE------------------PPPHLKFILATTEVKKIP 168

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             +  R      L   ++E++K+ +++        V + +   ++  S G+ R A  +L 
Sbjct: 169 VTILSRCQ-RFDLRRIKVEEMKSFLRKICDKEEADVDENSLTLMSKSSEGSVRDALSILD 227

Query: 228 RVRDFAEVAHAKTITRE 244
           +      +   K    +
Sbjct: 228 QAIITYNLMGEKVTEDK 244


>gi|289428998|ref|ZP_06430678.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           J165]
 gi|289157999|gb|EFD06222.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           J165]
 gi|313806717|gb|EFS45222.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL087PA2]
 gi|313811221|gb|EFS48935.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL083PA1]
 gi|313824758|gb|EFS62472.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL036PA2]
 gi|313828817|gb|EFS66531.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL063PA2]
 gi|313840337|gb|EFS78051.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL086PA1]
 gi|314961562|gb|EFT05663.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL002PA2]
 gi|314989198|gb|EFT33289.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL005PA3]
 gi|315082833|gb|EFT54809.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL027PA2]
 gi|315086408|gb|EFT58384.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL002PA3]
 gi|315087895|gb|EFT59871.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL072PA1]
 gi|327333903|gb|EGE75620.1| DNA polymerase III subunit gamma [Propionibacterium acnes HL096PA3]
          Length = 948

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/237 (19%), Positives = 74/237 (31%), Gaps = 23/237 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T +E  G+      LK  I   +         LF GP G GKTT A+++AR
Sbjct: 100 ALYRRYRPETFDEVIGEDHVIEPLKRAILNNRVNHAY----LFSGPRGCGKTTTARILAR 155

Query: 77  ELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAM 129
            L      T  P        DLA         DV+ ID      +     + E   +  +
Sbjct: 156 ALNCEQGPTPTPCGTCQSCRDLAC--GGPGSIDVIEIDAASHGGVDDARDLRERAFFAPV 213

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                  ++ E             + V+        I ATT    +   ++ R       
Sbjct: 214 HSRYKIYIIDEAHMVTPQGFNALLKLVEEPPPHVKFIFATTEPEKVIGTIRSR-THHYPF 272

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                + L   +       G+ V       +     G+ R +  +L ++   A   H
Sbjct: 273 RLVPPKVLVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVLDQLLGGAADGH 329


>gi|219666120|ref|YP_002456555.1| DNA polymerase III subunits gamma and tau [Desulfitobacterium
           hafniense DCB-2]
 gi|219536380|gb|ACL18119.1| DNA polymerase III, subunits gamma and tau [Desulfitobacterium
           hafniense DCB-2]
          Length = 554

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 64/210 (30%), Gaps = 37/210 (17%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  ++  GQ      L   +  +K         LF GP G GKTT A+V+A+ L    
Sbjct: 11  RPKNFKDMVGQDHVTKTLTNALMQSKVAHAY----LFSGPRGTGKTTTAKVLAKALNCEH 66

Query: 83  R------------------------STSGPVIAKAGDLAALLTNLE------DRDVLFID 112
           R                                   ++  L   +          V  ID
Sbjct: 67  REGVEPCNQCAFCLSIDQGSAMEVFEIDAASNRGIDEIRDLRDKVRLSAGESKYKVYIID 126

Query: 113 EIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           E+H L+      L   +E+   ++  ++      +     LSR              +  
Sbjct: 127 EVHMLTTEAFNALLKTLEEPPERVVFILATTEVHKIPLTILSRVQRFEFHRIPLEQIHSH 186

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
            D+    I  +  E E L+ I Q+      
Sbjct: 187 LDKVCQTIGRDV-EPEALQIIAQKSEGGLR 215


>gi|313826420|gb|EFS64134.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL063PA1]
          Length = 948

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/237 (19%), Positives = 74/237 (31%), Gaps = 23/237 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T +E  G+      LK  I   +         LF GP G GKTT A+++AR
Sbjct: 100 ALYRRYRPETFDEVIGEDHVIEPLKRAILNNRVNHAY----LFSGPRGCGKTTTARILAR 155

Query: 77  ELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAM 129
            L      T  P        DLA         DV+ ID      +     + E   +  +
Sbjct: 156 ALNCEQGPTPTPCGTCQSCRDLAC--GGPGSIDVIEIDAASHGGVDDARDLRERAFFAPV 213

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                  ++ E             + V+        I ATT    +   ++ R       
Sbjct: 214 HSRYKIYIIDEAHMVTPQGFNALLKLVEEPPPHVKFIFATTEPEKVIGTIRSR-THHYPF 272

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                + L   +       G+ V       +     G+ R +  +L ++   A   H
Sbjct: 273 RLVPPKVLVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVLDQLLGGAADGH 329


>gi|116326905|ref|YP_796625.1| DNA polymerase III, gamma and tau subunits [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116332429|ref|YP_802147.1| DNA polymerase III, gamma and tau subunits [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
 gi|116119649|gb|ABJ77692.1| DNA polymerase III, gamma and tau subunits [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116126118|gb|ABJ77389.1| DNA polymerase III, gamma and tau subunits [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
          Length = 487

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/244 (17%), Positives = 88/244 (36%), Gaps = 21/244 (8%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +      RP+   +   Q  A   L+  +++ K         +F GP G+GKTT+A+++A
Sbjct: 6   EVLSRKYRPQIFRDVIHQDLAIGALQNALKSGKIGHAY----IFFGPRGVGKTTIARILA 61

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAME 130
           + L       + P   +      +   +   DVL ID      I  +  + + + +  M 
Sbjct: 62  KRLNCRNPINNEP-CNECSSCTEITQGISS-DVLEIDAASNRGIENIRELRDNVKFAPMG 119

Query: 131 DFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
                 ++ E             ++++   +    I ATT    +   +  R    I   
Sbjct: 120 GKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQDFIFKK 179

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
              +  L+   ++  K+  +    E    IA +  G+ R     + +   F +   + T 
Sbjct: 180 V-PLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVRDMLSFMEQAIVFTDSKLSGTG 238

Query: 242 TREI 245
            R++
Sbjct: 239 IRKM 242


>gi|20093445|ref|NP_613292.1| replication factor C large subunit [Methanopyrus kandleri AV19]
 gi|42559499|sp|Q8TZC5|RFCL_METKA RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|19886264|gb|AAM01222.1| Replication factor C (ATPase involved in DNA replication)
           [Methanopyrus kandleri AV19]
          Length = 510

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 50/238 (21%), Positives = 87/238 (36%), Gaps = 41/238 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFI-EAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
             +   RPR+L+E   Q EA   L  +  E A+        VL  GPPG GKT+ A  +A
Sbjct: 3   PWVEKYRPRSLKELVNQDEAKKELAAWANEWARGSIPEPRAVLLHGPPGTGKTSAAYALA 62

Query: 76  RELGVNFRSTSGP------VIAKAGDLAALLTNL-----------------EDRDVLFID 112
            + G +    +        VI K    A+   +L                  DR ++ +D
Sbjct: 63  HDFGWDVIELNASDKRTRNVIEKIVGGASTSRSLLRMTREAGGDYEHVEGHSDRVLVLVD 122

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+        + + P  +   +  +      AR+  + ++            +L   L+D
Sbjct: 123 EV--------DGIDPREDRGGVTALTRAVRQARNPMVLVA--------NDPWVLPKSLRD 166

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
              +        + D+   ++R  +  G+   + A   IA R+RG  R A   L  + 
Sbjct: 167 AVRMIEFRRL-RVNDIVEALRRICEREGIEYEEVALRRIAKRARGDLRAAINDLEALA 223


>gi|330817182|ref|YP_004360887.1| DNA polymerase III, subunits gamma and tau [Burkholderia gladioli
           BSR3]
 gi|327369575|gb|AEA60931.1| DNA polymerase III, subunits gamma and tau [Burkholderia gladioli
           BSR3]
          Length = 813

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 56/293 (19%), Positives = 99/293 (33%), Gaps = 51/293 (17%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+      GQ      L   ++  +     L H  LF G  G+GKTTL+++ A+ L   
Sbjct: 11  RPKDFASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAMEDFQL 134
              TS P     G   A     E R V +++        +  ++ ++E  +Y  ++    
Sbjct: 66  TGITSQP----CGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             M+ E             ++++        I ATT    +   +  R  +   L     
Sbjct: 122 VYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPA 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
             +   ++R      +A   +A   +A  ++G+ R A  L     D A    A  +T   
Sbjct: 181 GHIVMHLERILGEEQVAFEPQALRLLARAAQGSMRDALSL----TDQAIAYSANEVTEAA 236

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
               L            LD  Y+  +          ++ I+A        I D
Sbjct: 237 VSGMLGA----------LDQTYMVRL----------LDAIAAADGSEILTIAD 269


>gi|313813997|gb|EFS51711.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL025PA1]
 gi|313821300|gb|EFS59014.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL036PA1]
 gi|314926534|gb|EFS90365.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL036PA3]
 gi|314980021|gb|EFT24115.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL072PA2]
 gi|314987438|gb|EFT31529.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL005PA2]
 gi|315081813|gb|EFT53789.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL078PA1]
 gi|315107699|gb|EFT79675.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL030PA1]
 gi|315109896|gb|EFT81872.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL030PA2]
 gi|327444628|gb|EGE91282.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL013PA2]
 gi|328758132|gb|EGF71748.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL020PA1]
          Length = 982

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/237 (19%), Positives = 74/237 (31%), Gaps = 23/237 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T +E  G+      LK  I   +         LF GP G GKTT A+++AR
Sbjct: 134 ALYRRYRPETFDEVIGEDHVIEPLKRAILNNRVNHAY----LFSGPRGCGKTTTARILAR 189

Query: 77  ELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAM 129
            L      T  P        DLA         DV+ ID      +     + E   +  +
Sbjct: 190 ALNCEQGPTPTPCGTCQSCRDLAC--GGPGSIDVIEIDAASHGGVDDARDLRERAFFAPV 247

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                  ++ E             + V+        I ATT    +   ++ R       
Sbjct: 248 HSRYKIYIIDEAHMVTPQGFNALLKLVEEPPPHVKFIFATTEPEKVIGTIRSR-THHYPF 306

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                + L   +       G+ V       +     G+ R +  +L ++   A   H
Sbjct: 307 RLVPPKVLVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVLDQLLGGAADGH 363


>gi|256848136|ref|ZP_05553580.1| DNA polymerase III, subunits gamma and tau [Lactobacillus
           coleohominis 101-4-CHN]
 gi|256715196|gb|EEU30173.1| DNA polymerase III, subunits gamma and tau [Lactobacillus
           coleohominis 101-4-CHN]
          Length = 570

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 57/308 (18%), Positives = 105/308 (34%), Gaps = 44/308 (14%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+   +  GQ      LK  I         + H  LF GP G GKT+ A++ A+ +  +
Sbjct: 11  RPQRFADVVGQQVITQTLKNAI-----ITNQISHAYLFAGPRGTGKTSAAKIFAKAINCH 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDL 136
            +    P      ++   +T     DV+ ID      +  +  I ++  Y   +      
Sbjct: 66  HQKDGEPCNEC--EICQSITAGTLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQADYKVY 123

Query: 137 MVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ++ E             ++++   +    I ATT    +   +  R       +    +D
Sbjct: 124 IIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPLTILSRVQ-RFDFHRISPQD 182

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
               ++           ++A   IA  + G  R A  +L +   F +            D
Sbjct: 183 TFDRMKYILDQKKFKYEEKALWVIANAAEGGMRDALSILDQALSFGD-------DDVTLD 235

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNF--GGGPVGIETISAGLSEPRDA---IEDLIEP 302
            ALL           +  + L    +      GP  ++T+   L + +D    IEDLI  
Sbjct: 236 DALLVTG-------SVTKKLLQTYFQQVATHEGPAALKTMDQILGQGKDGQRFIEDLI-- 286

Query: 303 YMIQQGFI 310
             I+   +
Sbjct: 287 SFIRDLLL 294


>gi|301347172|ref|ZP_07227913.1| DNA polymerase III, tau and gamma subunits [Acinetobacter baumannii
           AB056]
 gi|301511423|ref|ZP_07236660.1| DNA polymerase III, tau and gamma subunits [Acinetobacter baumannii
           AB058]
 gi|301594146|ref|ZP_07239154.1| DNA polymerase III, tau and gamma subunits [Acinetobacter baumannii
           AB059]
          Length = 417

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 82/257 (31%), Gaps = 53/257 (20%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RPR   E  GQ          + +A  R       LF G  G+GKTT+A+++A+ L
Sbjct: 6   ARKYRPRNFNELVGQNHV----SRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCL 61

Query: 79  GVNFRSTS------------------------GPVIAKAGDLAALLTNL------EDRDV 108
                 TS                             K  D   LL N+          V
Sbjct: 62  NCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKV 121

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
             IDE+H LS      L   +E+                         + ATT    L  
Sbjct: 122 YLIDEVHMLSTHSFNALLKTLEE------------------PPEHVKFLFATTDPQKLPI 163

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            +  R  +   L    ++++   +    +   +    +A  +IA  ++G+ R A  L  +
Sbjct: 164 TVISRC-LQFTLRPLAVDEITKHLGAILEKEQITADQDAIWQIAESAQGSLRDALSLTDQ 222

Query: 229 VRDFAEVAHAKTITREI 245
              + + A      +E+
Sbjct: 223 AIAYGQGAVHHQDVKEM 239


>gi|193216548|ref|YP_001999790.1| DNA polymerase III subunits gamma and tau [Mycoplasma arthritidis
           158L3-1]
 gi|193001871|gb|ACF07086.1| DNA polymerase III subunits gamma and tau [Mycoplasma arthritidis
           158L3-1]
          Length = 647

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/242 (19%), Positives = 74/242 (30%), Gaps = 58/242 (23%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP   +E  GQ      L   I+  K         LF GP G GKT++A++ A  L  + 
Sbjct: 13  RPNKFDEVKGQENIIRTLTNIIKMQKISHAY----LFCGPHGTGKTSVAKIFANTLNCSH 68

Query: 83  RSTS---------------------GPVIAKAGDLAALLTNLE------DRDVLFIDEIH 115
            S                               D+  L   ++         +  IDE+H
Sbjct: 69  SSDLLEPCQECIENIDRNLDIIEIDAASNTGIDDIRELREKIKHLPTHSKYKIYIIDEVH 128

Query: 116 RLSIIVEEILYPAMED---FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
            LS      L   +E+     + ++    P              +   +RV        D
Sbjct: 129 MLSKSAFNALLKTLEEPPKHAIFILATTDPQK----------IPLTILSRVQRFNFKRID 178

Query: 173 RFGIPIR-LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
              I +  ++ Y+ E              +     A   IA  + G+ R A  L  +V  
Sbjct: 179 ENVIVMHLMHVYDQE-------------HIDYEKNALKLIASLANGSFRDALSLADQVSI 225

Query: 232 FA 233
           FA
Sbjct: 226 FA 227


>gi|157369378|ref|YP_001477367.1| DNA polymerase III subunits gamma and tau [Serratia proteamaculans
           568]
 gi|157321142|gb|ABV40239.1| DNA polymerase III, subunits gamma and tau [Serratia proteamaculans
           568]
          Length = 650

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 53/306 (17%), Positives = 102/306 (33%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKTT+A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTTIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGQCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++   S    + ATT    L   +  R  +   L   +++ +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPSHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVDQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           ++ ++   +   +     A   +A  + G+ R A  L     D A       +T      
Sbjct: 184 RSQLETVLQAEQITSDQRALQLLARAADGSMRDALSL----TDQAIAMGQGQVTTATVSQ 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L       D+  L  L  +    G   +     +A      + +       + +  
Sbjct: 240 MLGTLD------DEQPLAILEALVSADGEKVMAQVAQAASRGVDWENLLIETLALLHRIA 293

Query: 309 FIQRTP 314
            +Q  P
Sbjct: 294 MVQLLP 299


>gi|327393012|dbj|BAK10434.1| DNA polymerase III tau subunit DnaX [Pantoea ananatis AJ13355]
          Length = 656

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 55/306 (17%), Positives = 104/306 (33%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+   +  GQ    + L        +        LF G  G+GKTT+A+++A+  G+N 
Sbjct: 11  RPQAFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTTIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGQCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++   S    + ATT    L   +  R  +   L   E++ +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPSHVKFLLATTDPQKLPVTILSRC-LQFHLKALEVDQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  +    +   +A    A   +A  + G+ R A  L     D A      ++T      
Sbjct: 184 RQQLDHVLEQEQIAREPRALQLLARAADGSMRDALSL----TDQAIAMGEGSVTSATVGT 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L       D+  L  L  +    G   + +   +A      +A+   +   + +  
Sbjct: 240 MLGTLD------DEQPLGLLEAVVEGNGEQMMALLAQAASRGVEWEALLVEMLRLLHRIA 293

Query: 309 FIQRTP 314
            +Q  P
Sbjct: 294 MVQLLP 299


>gi|321458433|gb|EFX69502.1| hypothetical protein DAPPUDRAFT_202808 [Daphnia pulex]
          Length = 330

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 65/187 (34%), Gaps = 25/187 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+ L++     +  S ++ FI         L H+LF GPPG GKT+     A+
Sbjct: 8   PWVEKYRPKQLDDLISHQDIISTIRKFI-----NENRLPHLLFYGPPGTGKTSTILACAK 62

Query: 77  ELGVNFRSTSGPVIAKAGDLA-------ALLTNLEDRDVL-------FIDEIHRLSIIVE 122
           EL    +  S  +   A D          +++    R +         +DE   ++   +
Sbjct: 63  ELYTPQQFNSMVLELNASDDRGINVVRNQIMSFASTRSIFKSGFKLIILDEADAMTNDAQ 122

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             L   +E F       E      +   +S+      +        PL+    +P     
Sbjct: 123 NALRRVIEKF------TENVRFCLICNYMSKIIPAIQSRCTRFRFGPLKSDQILPRMNYV 176

Query: 183 YEIEDLK 189
            E E +K
Sbjct: 177 IEEEKIK 183


>gi|297844582|ref|XP_002890172.1| hypothetical protein ARALYDRAFT_889048 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297336014|gb|EFH66431.1| hypothetical protein ARALYDRAFT_889048 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 766

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 54/230 (23%), Positives = 86/230 (37%), Gaps = 29/230 (12%)

Query: 26  TLEEFTGQVEACSNLKV-----------FIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           T ++F G  +    L+            F    K   +    +LF GPPG GKT LA  +
Sbjct: 192 TFKDFGGIRKVLDELERNVLFPILNPEPFR---KIGVKPPSGILFHGPPGCGKTKLANAI 248

Query: 75  ARELGVNFRSTSG-PVIAKAG-----DLAALLTNLEDR--DVLFIDEIHRLSIIVEEILY 126
           A E+GV F   S   V++        ++  L +        ++FIDEI  +    E    
Sbjct: 249 ANEVGVPFYKISATDVVSGVSGASEENIRELFSKAYRTAPSIVFIDEIDAIGSKRENQQR 308

Query: 127 PAMEDFQLDLMV-GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183
              +     L+   +GP  +  + +     +I AT R   L   L+   RF   I L+  
Sbjct: 309 EMEKRIVTQLLTCMDGPVNKGPESSAGFVLVIGATNRPDALDPALRRSGRFECEIALSVP 368

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
           + +    I+   A+   L        +    +R TP   G  L  V + A
Sbjct: 369 DEDARTEILSVVAQKLRLE----GPFDKKRIARLTPGFVGADLEGVANMA 414



 Score = 48.5 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 64/193 (33%), Gaps = 24/193 (12%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALD--------HVLFVGPPGLGKTTLAQVVARELG 79
           ++  G          +I     + +             L  GPPG GKT +A+ VA E G
Sbjct: 486 DDVGGLEHLRLEFNRYIVRPIKKPDIYKAFGVDLETGFLLYGPPGCGKTLIAKAVANEAG 545

Query: 80  VNFRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAMED 131
            NF    G  +     G+    +  L  R       V+F DE+  L+           E 
Sbjct: 546 ANFMHIKGAELLNKYVGESELAIRTLFQRARTCSPCVIFFDEVDALTTSR------GKEG 599

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
             +   +           +     +I AT R  ++        RFG  + +     ++  
Sbjct: 600 AWVVERLLNQFLVELDGGDRRNVYVIGATNRPDVIDPAFLRPGRFGNLLYVPLPNADERA 659

Query: 190 TIVQRGAKLTGLA 202
           +I++  A+   + 
Sbjct: 660 SILKAIARKKPID 672


>gi|198461041|ref|XP_001361892.2| GA17483 [Drosophila pseudoobscura pseudoobscura]
 gi|198137214|gb|EAL26471.2| GA17483 [Drosophila pseudoobscura pseudoobscura]
          Length = 745

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 60/271 (22%), Positives = 98/271 (36%), Gaps = 24/271 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  EA   LK  +E  K          +    VL VGPPG GKT LA+ VA E 
Sbjct: 307 TFDDVKGCDEAKQELKEVVEFLKNPDKFSNLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 366

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F   +GP          A  +  L    + R   V+FIDEI  +       +     
Sbjct: 367 KVPFFHAAGPEFDEVLVGQGARRVRDLFKAAKARAPCVIFIDEIDSVGAKRTNSVLHPYA 426

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
           +  ++ ++ E               ++ AT R   L   L    RF + + ++  +    
Sbjct: 427 NQTINQLLSEMDGFHQNAG----VIVLGATNRRDDLDQALLRPGRFDVEVVVSTPDFTGR 482

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAM-RSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           K I+     LT +   D     +A   S  T      ++ +    A +  A+T+  +  +
Sbjct: 483 KEIL--SLYLTKILHDDIDLDMLARGTSGFTGADLENMINQAALRAAIDGAETVNMKHLE 540

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
            A  ++ +      +L       I     GG
Sbjct: 541 TARDKVLMGPERKARLPDEEANTITAYHEGG 571


>gi|109066327|ref|XP_001082511.1| PREDICTED: replication factor C subunit 2 isoform 2 [Macaca
           mulatta]
          Length = 352

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 77/227 (33%), Gaps = 38/227 (16%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   +   RP  L E  G  +  S L+VF     AR   + +++  GPPG GKTT    +
Sbjct: 33  ELPWVEKYRPVKLNEIVGNEDTVSRLEVF-----AREGNVPNIIIAGPPGTGKTTSILCL 87

Query: 75  AR------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIHRLSII 120
           AR            EL  +       V  K    A     L      ++ +DE   ++  
Sbjct: 88  ARALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDG 147

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            ++ L   ME +                   +RF    A      +  P+Q R  +    
Sbjct: 148 AQQALRRTMEIYSKT----------------TRF--ALACNASDKIIEPIQSRCAVLRYT 189

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
              + + L   +    +   +  TD+    I   ++G  R A   L+
Sbjct: 190 KLTDAQILAR-LMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQ 235


>gi|88705062|ref|ZP_01102774.1| DNA polymerase III subunit tau and gamma [Congregibacter litoralis
           KT71]
 gi|88700757|gb|EAQ97864.1| DNA polymerase III subunit tau and gamma [Congregibacter litoralis
           KT71]
          Length = 555

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 45/245 (18%), Positives = 87/245 (35%), Gaps = 31/245 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP T +   GQ      L+  +++ +     L H  LF G  G+GKTT+A+++AR L   
Sbjct: 11  RPATFDALVGQEHVLQALRHALDSNR-----LHHAYLFTGTRGVGKTTIARILARSLNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYP-----AMEDFQL 134
              ++ P     G+ ++ +   E R  D++ +D   R  +     L              
Sbjct: 66  KGVSAAP----CGECSSCVEISEGRSVDLIEVDAASRTKVEDTRELLDNVQYAPTRSRFK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             ++ E             ++++        + ATT    L   +  R  +   L     
Sbjct: 122 VYLIDEVHMLSGHSFNALLKTLEEPPEHVKFLLATTDPQKLPATVLSRC-LQFNLKNMSA 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           + +   ++       +A  D A  ++   + G+ R A  L     D A      ++    
Sbjct: 181 QRVVEHLRDVLTQEQVAFDDAALWQLGRAAAGSMRDALSL----TDQAIAFGDGSLRDAE 236

Query: 246 ADAAL 250
             + L
Sbjct: 237 VASML 241


>gi|254168911|ref|ZP_04875751.1| ATPase, AAA family protein [Aciduliprofundum boonei T469]
 gi|197622175|gb|EDY34750.1| ATPase, AAA family protein [Aciduliprofundum boonei T469]
          Length = 437

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 46/253 (18%), Positives = 85/253 (33%), Gaps = 36/253 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+ L +  G  +A + +  + E  +    +   ++ VG PG GKTT A+ +A 
Sbjct: 4   PWVEKYRPKRLRDIVGNTQAINEILRWAEEWEEGKPSYKALILVGKPGCGKTTTARALAN 63

Query: 77  ELGVNFRSTSGPVIAKAGDLAALL-----------------TNLEDRDVLFIDEIHRLSI 119
           E+G      +   +     +  +                  T    R ++  DE      
Sbjct: 64  EMGWGVIELNASDVRNEEKIKQIALRGAIYETFTDDGKFISTRKGGRKLIIFDEADN--- 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIA--ATTRVGLLTNPLQDRFGIP 177
                LY  ++D       G+     ++K +     LI     +        +       
Sbjct: 121 -----LYEGVKDGDRG---GKKAIVETIKASKQPIILIGNDYYSITSGTWGKVLKSVAKV 172

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
           ++        +  +++R     G+   DE    IA +S G  R A      + D   +A 
Sbjct: 173 VKFRAVNRAQIVKVLRRICAAEGIKCQDEVLKYIAGKSGGDLRAA------INDLQAIAE 226

Query: 238 AKTITREIADAAL 250
            K +  E   AAL
Sbjct: 227 GKKVVTEDDVAAL 239


>gi|94676847|ref|YP_588586.1| DNA polymerase III, subunits gamma and tau [Baumannia
           cicadellinicola str. Hc (Homalodisca coagulata)]
 gi|94219997|gb|ABF14156.1| DNA polymerase III, subunits gamma and tau [Baumannia
           cicadellinicola str. Hc (Homalodisca coagulata)]
          Length = 384

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 42/208 (20%), Positives = 68/208 (32%), Gaps = 40/208 (19%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+   +  GQ    + L      +          LF G  G+GKTT+A+++A+ L    
Sbjct: 12  RPQKFTDVVGQEHVITAL----TNSFLLGRIHHAYLFSGTRGVGKTTIARLLAKGLNCQD 67

Query: 83  RSTSGP------------------------VIAKAGDLAALLTNLE------DRDVLFID 112
             T+ P                           K  D   +L NL+         V  ID
Sbjct: 68  GITTNPCNKCNNCRDISQNSFIDLIEIDAASRTKVEDTREILDNLQYAPVYGRFKVYLID 127

Query: 113 EIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTR-VGLLTNP 169
           E+H LS      L   +E+    +  ++      +     LSR          V  + N 
Sbjct: 128 EVHMLSRYSFNALLKTLEEPPVHIKFILATTDLHKIPMTILSRCLQFHLKPLSVNQICNQ 187

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
           L+    I I    +  +    ++ R A 
Sbjct: 188 LK---YILISEKIHVEQYALHLLARAAD 212


>gi|219670925|ref|YP_002461360.1| ATPase AAA [Desulfitobacterium hafniense DCB-2]
 gi|219541185|gb|ACL22924.1| Sigma 54 interacting domain protein [Desulfitobacterium hafniense
           DCB-2]
          Length = 652

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 74/337 (21%), Positives = 119/337 (35%), Gaps = 67/337 (19%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
             +LRP+ +EE  GQ      ++  +  AK       H++  GPPG+GKT+ A+V    +
Sbjct: 187 AEVLRPQAVEEIIGQEV---PMQFLL--AKLATPYPQHIIIYGPPGVGKTSAARVALEAV 241

Query: 79  GVNFRSTSG------------------------------PVIAKAG-DLAA--------- 98
             N  S                                 P+   A  DLA          
Sbjct: 242 KKNVNSPFAESAPFVEVDGTTLRWDPRDVTNPLLGSVHDPIYQGAKRDLAETGIPEPKLG 301

Query: 99  LLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG-EGPSARSVKINLSR---- 153
           L+++     +LFIDEI  +  ++   L   +ED ++        P+   V + + +    
Sbjct: 302 LVSDAHGG-ILFIDEIGEMDPVLLNKLLKVLEDKRVAFESAYYDPNDPQVPLYIKKLFEE 360

Query: 154 -----FTLIAATTRVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEA 207
                F LI ATTR     NP L+ R G  I  N  E  D++ IV + A+  G  + +  
Sbjct: 361 GAPADFVLIGATTRDPRELNPALRSRCG-EIYFNPLEPRDIQHIVSQAAQKLGANL-EAK 418

Query: 208 ACEIAMRSRGTPRIAGRLLRRVRDFAEVAH--------AKTITREIADAALLRLAIDKMG 259
             E+        R A  +L      +   H        A+ +   +  A L      K  
Sbjct: 419 VPEVISEYVFEGRKANTILTDAYGLSRYRHPEQEVLVKAEEVYEVLRSARLTPYISHKAA 478

Query: 260 FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAI 296
                 + L +    F G  + +E I     E +  I
Sbjct: 479 DRGETGKILGLGVHGFVGSVLELEAIVFPGREGKGTI 515


>gi|58617668|ref|YP_196867.1| DNA polymerase III gamma and tau chains [Ehrlichia ruminantium str.
           Gardel]
 gi|58417280|emb|CAI28393.1| DNA polymerase III gamma and tau chains [Ehrlichia ruminantium str.
           Gardel]
          Length = 500

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 50/270 (18%), Positives = 94/270 (34%), Gaps = 35/270 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP   ++  GQ          +  A    +    +L  G  G+GKTT A++++  L    
Sbjct: 21  RPSNFKDLIGQDVLV----RILRNAFHLNKVPQSILLTGGSGIGKTTAARIISMCLNCAS 76

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
             TS P       ++  + N    DV+ ID     SI   +I+       P    F++ +
Sbjct: 77  GPTSNPCNTCINCIS--IKNFNHPDVIEIDAASNTSIEDVKIILENSHYVPITSKFKVYI 134

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               + ++        I ATT V  +   +  R      L     E++
Sbjct: 135 IDEVHMLSNSAFNALLKVLEEPAPYVKFILATTEVKKIPVTIISRCQ-RFDLQRIPTENI 193

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              ++  AK   +   +E+   IA  S G+ R A  LL +   ++    ++  T+++   
Sbjct: 194 VDHLRIIAKEENILFDEESIKLIAYNSDGSMRNALSLLEQSAIYSNKNLSEESTKKM--- 250

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
                         ++   L  I  +   G
Sbjct: 251 -----------LGYVNRHVLLKIIESITNG 269


>gi|299782857|gb|ADJ40855.1| DNA-directed DNA polymerase [Lactobacillus fermentum CECT 5716]
          Length = 563

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 86/227 (37%), Gaps = 23/227 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+   +  GQ    + LK  I       + + H  LF GP G GKT+ A++ A+ +  +
Sbjct: 11  RPQRFSDLVGQQIVSTTLKNAI-----ITKKISHAYLFAGPRGTGKTSAAKIFAKAVNCH 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDL 136
            ++   P      +L   +T  +  DV+ ID      + ++  I +++ Y   +      
Sbjct: 66  HQTDGEPCNEC--ELCQAITAGQLNDVIEIDAASNNGVEQIRDIRDKVKYAPTQADYKVY 123

Query: 137 MVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ++ E             ++++   +    I ATT    +   +  R            +D
Sbjct: 124 IIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPLTIISRVQ-RFDFRRISAKD 182

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
               ++       +A  ++A   IA  + G  R A  +L +   F +
Sbjct: 183 AFERMKYILDQKKVAYQEDALWVIANAAEGGMRDALSILDQALSFGD 229


>gi|262066195|ref|ZP_06025807.1| DNA polymerase III, gamma and tau subunit [Fusobacterium
           periodonticum ATCC 33693]
 gi|291380102|gb|EFE87620.1| DNA polymerase III, gamma and tau subunit [Fusobacterium
           periodonticum ATCC 33693]
          Length = 482

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 52/242 (21%), Positives = 100/242 (41%), Gaps = 22/242 (9%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVAREL 78
              RP +  E +G+ E   +LK+ ++      +++ H  LF GP G+GKTT+A+++A+ +
Sbjct: 7   RKYRPSSFSEVSGENEIVKSLKLSLK-----NKSMAHAYLFSGPRGVGKTTIARLIAKGV 61

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQ 133
                   G    +  +  A+       D++ ID      I  +  + E+I Y  +E  +
Sbjct: 62  NCLNLGEDGEPCNECKNCKAINEG-RFSDLIEIDAASNRSIDEIRSLKEKINYQPVEGLK 120

Query: 134 LDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
              ++ E             ++++   S    I ATT +  +   +  R          +
Sbjct: 121 KVYIIDEAHMLTKEAFNALLKTLEEPPSHVMFILATTELDKILPTIISRCQ-RYDFKALD 179

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           IED+K+ ++   K   L+++DE    I   S G+ R +  +L R+   A          E
Sbjct: 180 IEDMKSGLKHILKEENLSMSDEVYPLIYENSSGSMRDSISILERLIVTANGNEINLKIAE 239

Query: 245 IA 246
             
Sbjct: 240 DT 241


>gi|227514026|ref|ZP_03944075.1| DNA-directed DNA polymerase [Lactobacillus fermentum ATCC 14931]
 gi|227087612|gb|EEI22924.1| DNA-directed DNA polymerase [Lactobacillus fermentum ATCC 14931]
          Length = 563

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 86/227 (37%), Gaps = 23/227 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+   +  GQ    + LK  I       + + H  LF GP G GKT+ A++ A+ +  +
Sbjct: 11  RPQRFSDLVGQQIVSTTLKNAI-----ITKKISHAYLFAGPRGTGKTSAAKIFAKAVNCH 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDL 136
            ++   P      +L   +T  +  DV+ ID      + ++  I +++ Y   +      
Sbjct: 66  HQTDGEPCNEC--ELCQAITAGQLNDVIEIDAASNNGVEQIRDIRDKVKYAPTQADYKVY 123

Query: 137 MVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ++ E             ++++   +    I ATT    +   +  R            +D
Sbjct: 124 IIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPLTIISRVQ-RFDFRRISAKD 182

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
               ++       +A  ++A   IA  + G  R A  +L +   F +
Sbjct: 183 AFERMKYILDQKKVAYQEDALWVIANAAEGGMRDALSILDQALSFGD 229


>gi|184154759|ref|YP_001843099.1| DNA-directed DNA polymerase III gamma/tau subunit [Lactobacillus
           fermentum IFO 3956]
 gi|260663212|ref|ZP_05864104.1| DNA-directed DNA polymerase III gamma/tau subunit [Lactobacillus
           fermentum 28-3-CHN]
 gi|183226103|dbj|BAG26619.1| DNA-directed DNA polymerase III gamma/tau subunit [Lactobacillus
           fermentum IFO 3956]
 gi|260552404|gb|EEX25455.1| DNA-directed DNA polymerase III gamma/tau subunit [Lactobacillus
           fermentum 28-3-CHN]
          Length = 563

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 86/227 (37%), Gaps = 23/227 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+   +  GQ    + LK  I       + + H  LF GP G GKT+ A++ A+ +  +
Sbjct: 11  RPQRFSDLVGQQIVSTTLKNAI-----ITKKISHAYLFAGPRGTGKTSAAKIFAKAVNCH 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDL 136
            ++   P      +L   +T  +  DV+ ID      + ++  I +++ Y   +      
Sbjct: 66  HQTDGEPCNEC--ELCQAITAGQLNDVIEIDAASNNGVEQIRDIRDKVKYAPTQADYKVY 123

Query: 137 MVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ++ E             ++++   +    I ATT    +   +  R            +D
Sbjct: 124 IIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPLTIISRVQ-RFDFRRISAKD 182

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
               ++       +A  ++A   IA  + G  R A  +L +   F +
Sbjct: 183 AFERMKYILDQKKVAYQEDALWVIANAAEGGMRDALSILDQALSFGD 229


>gi|152979856|ref|YP_001354020.1| DNA polymerase III gamma and tau subunit [Janthinobacterium sp.
           Marseille]
 gi|151279933|gb|ABR88343.1| DNA polymerase III gamma and tau subunit [Janthinobacterium sp.
           Marseille]
          Length = 673

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 49/282 (17%), Positives = 98/282 (34%), Gaps = 34/282 (12%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARE 77
               RP++ +   GQ      L   ++      + L H  LF G  G+GKTTL++++A+ 
Sbjct: 7   ARKYRPKSFDTLVGQEHVVRALTHALD-----NQRLHHAYLFTGTRGVGKTTLSRILAKS 61

Query: 78  LGVNFRSTSGPVIAKA-GDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAM 129
                   +G + +   G   A +     R V +I+        +  ++ ++E+ +Y   
Sbjct: 62  FNCVGPDGNGGITSTPCGVCEACVAIDAGRFVDYIEMDAASNRGVDEMAQLLEQAVYAPS 121

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                  M+ E             ++++        I ATT    +   +  R  +   L
Sbjct: 122 NARFKVYMIDEVHMLTNHAFNSMLKTLEEPPEHVKFILATTDPQKIPVTVLSRC-LQFNL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
                  + + +        +     A   +A  + G+ R A  L  +   +A    A  
Sbjct: 181 KQMPPGHIVSHLDNILGQENIEFETPALRLLAQGAHGSMRDALSLTDQAIAYA----AGK 236

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGI 282
           +T +     L  L    +      +R L  +A   G G + +
Sbjct: 237 VTLDAVQGMLGALDQSFL------IRLLDALAEKDGAGLLAV 272


>gi|149193820|ref|ZP_01870918.1| putative atp-dependent protease la protein [Caminibacter
           mediatlanticus TB-2]
 gi|149135773|gb|EDM24251.1| putative atp-dependent protease la protein [Caminibacter
           mediatlanticus TB-2]
          Length = 774

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 67/317 (21%), Positives = 123/317 (38%), Gaps = 56/317 (17%)

Query: 11  NVSQEDADISLLRPRTLE-EFTGQVEACSNLKVFI---EAAKARAEALD--HVLFVGPPG 64
           N ++E+ DI+ L+   L+ +  G  +    +  +    E AK R E      + FVGPPG
Sbjct: 297 NYAKEEFDINELK-ERLDKDHYGLKKPKERIIEYFGAKELAKKRGEEFSGATLCFVGPPG 355

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA----------------ALLTNLEDRDV 108
           +GKT+LA  +A+ L  N    +   +    +L                  ++   +   V
Sbjct: 356 VGKTSLANSIAKALDKNLVRIALGGLEDVNELRGHRRTYIGAMPGRIAQGIINAKQMNPV 415

Query: 109 LFIDEIHRLSI-------IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATT 161
           + +DEI ++S        ++ E+L P       DL +       +  ++LS+   IA   
Sbjct: 416 IVLDEIDKISRYRGDPTAVLLEVLDPEQNSHFRDLYL-------NFDLDLSKVLFIATAN 468

Query: 162 RVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR----------GAKLTGLAVTDEAACEI 211
               +  PL+DR  +   +  Y  ++   I +R            K + +++TD A  EI
Sbjct: 469 DPSTIPAPLRDRMEMIF-VGSYTPQEKFEIAKRYLIPQEMKKHSLKKSEISITDAALREI 527

Query: 212 AMR------SRGTPRIAGRLLRRVR-DFAEVAHAKTITREIADAALLRLAIDKMGFDQLD 264
             +       R   RI  +++R+      E      +T +     L +        D+ D
Sbjct: 528 IDKYTKEAGVRNLRRIIAKIMRKAAIKILEGEKQVKVTLKNLKEFLEKPIFGIEEIDKKD 587

Query: 265 -LRYLTMIARNFGGGPV 280
            +  +  +A    GG V
Sbjct: 588 KIGVVNGLAWTPVGGDV 604


>gi|126725863|ref|ZP_01741705.1| DNA polymerase III subunits gamma and tau [Rhodobacterales
           bacterium HTCC2150]
 gi|126705067|gb|EBA04158.1| DNA polymerase III subunits gamma and tau [Rhodobacterales
           bacterium HTCC2150]
          Length = 596

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 62/313 (19%), Positives = 107/313 (34%), Gaps = 33/313 (10%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           +     ++        RP T  +  GQ      LK    A +         +  G  G G
Sbjct: 1   MSETTEAKYQVLARKYRPETFADLVGQDAMVRTLKNAFAADRIAQA----FVLTGIRGTG 56

Query: 67  KTTLAQVVARELGV-NFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSI---- 119
           KT+ A+++A+ L         GP     G     +   E R  D++ +D   R  +    
Sbjct: 57  KTSTARIIAKGLNCIGPDGNGGPTTEPCGQCEHCVAISEGRHVDIMEMDAASRTGVGDIR 116

Query: 120 -IVEEILYPAMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNP 169
            I+E + Y A        ++ E             ++++        + ATT +  +   
Sbjct: 117 EIIESVHYRAASARYKIYIIDEVHMLSNSAFNALLKTLEEPPEHVKFVFATTEIRKVPVT 176

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           +  R      L   E E +  ++Q  A      +TD+A   I   + G+ R A  LL   
Sbjct: 177 VLSRCQ-RFDLRRIEPEVMIKMLQGNAASENANITDDALALITRAAEGSARDAQSLL--- 232

Query: 230 RDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVG-IETISAG 288
            D A    A   T +   A L      ++    +D     MI R    G +  +    + 
Sbjct: 233 -DQAISHGAGETTADQVRAMLGLADRGRV----MD--MFEMIMRGDAAGALAELSAQYSD 285

Query: 289 LSEPRDAIEDLIE 301
            ++P   + DL E
Sbjct: 286 GADPLAVLRDLAE 298


>gi|293390054|ref|ZP_06634388.1| DNA polymerase III subunit tau [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290950588|gb|EFE00707.1| DNA polymerase III subunit tau [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 681

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 47/242 (19%), Positives = 77/242 (31%), Gaps = 55/242 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGV- 80
           RP+T  +  GQ    + L     A   R   L H  LF G  G+GKT++A++ A+ L   
Sbjct: 11  RPKTFADVVGQQHILTAL-----ANGLRENRLHHAYLFSGTRGVGKTSIARLFAKGLNCV 65

Query: 81  -----------------------NFRSTSGPVIAKAGDLAALLTNLEDRDVL------FI 111
                                  +          K  D   LL N++ + VL       I
Sbjct: 66  SGVTAEPCGVCEHCNAIEKGNFIDLIEIDAASRTKVEDTRELLDNVQYKPVLGRYKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSRHSFNALLKTLEE------------------PPEYVKFLLATTDPYKLPVTIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L   E   +   +        +     A  ++A  ++G+ R +  L  +   
Sbjct: 168 SRC-MQFHLKALEQSQIADHLAYILNQEQIPFESLALDKLANAAQGSIRDSLSLTDQAIA 226

Query: 232 FA 233
            +
Sbjct: 227 MS 228


>gi|254384081|ref|ZP_04999426.1| DNA polymerase III subunits gamma and tau [Streptomyces sp. Mg1]
 gi|194342971|gb|EDX23937.1| DNA polymerase III subunits gamma and tau [Streptomyces sp. Mg1]
          Length = 753

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 58/175 (33%), Gaps = 26/175 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP +  E  GQ      L   +   +         LF GP G GKTT A+++AR
Sbjct: 15  ALYRRYRPESFAEVIGQEHVTVPLMQALRNNRVNHAY----LFSGPRGCGKTTSARILAR 70

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR----DVLFIDEIHRLSII------VEEILY 126
            L        GP     G+  +      +     DV+ ID      +        +    
Sbjct: 71  CLNCE----QGPTPTPCGECQSCRDLARNGPGSIDVIEIDAASHGGVDDARDLREKAFFG 126

Query: 127 PAMEDFQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           PA   +++ ++         G     + V+        I ATT    +   ++ R
Sbjct: 127 PASSRYKIYIIDEAHMVTSAGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSR 181


>gi|82702979|ref|YP_412545.1| DNA-directed DNA polymerase [Nitrosospira multiformis ATCC 25196]
 gi|82411044|gb|ABB75153.1| DNA polymerase III, tau subunit [Nitrosospira multiformis ATCC
           25196]
          Length = 580

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 52/280 (18%), Positives = 98/280 (35%), Gaps = 28/280 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPR   E TGQ      L   +E  +     L H  LF G  G+GKTT+A+++A+ L   
Sbjct: 13  RPRRFSELTGQDHVVRALTNALEQKR-----LHHAYLFTGTRGIGKTTIARILAKALNCQ 67

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAMEDFQL 134
                G      G  +A +     R V  I+       ++ ++  ++E  LY        
Sbjct: 68  A----GVTSEPCGVCSACIEIDGGRFVDLIEVDAASNTQVEKMRELLENALYAPTVARYK 123

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             ++ E             ++++        I ATT    +   +  R  +   L     
Sbjct: 124 VYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRC-LQFNLKQIPF 182

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
             + + ++   +   +     +   +A  ++G+ R A  +L +   F E    +   R++
Sbjct: 183 PLIVSHLRHVLEQEHINCDATSLQLLARAAQGSMRDALSILDQAIAFGEGKIEEAGVRDM 242

Query: 246 ADAALLRLAIDKM-GFDQLDLRYLTMIARNFGGGPVGIET 284
             A       D +    Q D   +  IA       +  + 
Sbjct: 243 LGAVDQGYLFDLLEALAQRDGARMLAIADAMETRSLSFDA 282


>gi|293191966|ref|ZP_06609326.1| DNA polymerase III, subunit gamma and tau [Actinomyces
           odontolyticus F0309]
 gi|292820389|gb|EFF79377.1| DNA polymerase III, subunit gamma and tau [Actinomyces
           odontolyticus F0309]
          Length = 476

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 61/215 (28%), Gaps = 40/215 (18%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T ++  GQ      LK  + A +         LF GP G GKTT A+++AR
Sbjct: 4   ALYRRYRPDTFDQVIGQEHVTEPLKAALRANRVTHAY----LFSGPRGCGKTTSARILAR 59

Query: 77  ELGV--------------------------NFRSTSGPVIAKAGDLAALLTNL------E 104
            L                            +             D   L          +
Sbjct: 60  CLNCAQGPTDTPCGQCESCRELATGGPGSLDVVEIDAASHGGVDDARDLRERATFAPVRD 119

Query: 105 DRDVLFIDEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTR 162
              +  IDE H ++      L   +E+    +  +       R +    SR         
Sbjct: 120 RYKIFIIDEAHMVTNQGFNALLKLVEEPPEHVKFVFATTEPERVIGTIRSRTHHYPFRLV 179

Query: 163 VGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
              +  P     G+    +    E + T+V R   
Sbjct: 180 PPDVLGPYL--TGLCSEEHIGVGEGVLTLVMRAGG 212


>gi|314959377|gb|EFT03479.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL002PA1]
          Length = 948

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 47/237 (19%), Positives = 74/237 (31%), Gaps = 23/237 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T +E  G+      LK  I   +         LF GP G GKTT A+++AR
Sbjct: 100 ALYRRYRPETFDEVIGEDHVIEPLKRAILNNRVNHAY----LFSGPRGCGKTTTARILAR 155

Query: 77  ELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAM 129
            L      T  P        DLA         DV+ ID      +     + E   +  +
Sbjct: 156 ALNCEQGPTPTPCGTCQSCRDLAC--GGPGSIDVIEIDAASHGGVDDARDLRERAFFAPV 213

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                  ++ E             + V+        I ATT    +   ++ R       
Sbjct: 214 HSRYKIYIIDEAHMVTPQGFNALLKLVEEPPPHVKFIFATTEPEKVIGTIRSR-THHYPF 272

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                + L   +       G+ V       +     G+ R +  +L ++   A   H
Sbjct: 273 RLVPPKVLVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVLDQLLGGAADGH 329


>gi|314916439|gb|EFS80270.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL005PA4]
 gi|314917280|gb|EFS81111.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL050PA1]
 gi|314921655|gb|EFS85486.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL050PA3]
 gi|314955184|gb|EFS99589.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL027PA1]
 gi|315102222|gb|EFT74198.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL046PA1]
 gi|327454471|gb|EGF01126.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL087PA3]
 gi|327456539|gb|EGF03194.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL083PA2]
 gi|328756234|gb|EGF69850.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL087PA1]
          Length = 948

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 47/237 (19%), Positives = 74/237 (31%), Gaps = 23/237 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T +E  G+      LK  I   +         LF GP G GKTT A+++AR
Sbjct: 100 ALYRRYRPETFDEVIGEDHVIEPLKRAILNNRVNHAY----LFSGPRGCGKTTTARILAR 155

Query: 77  ELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAM 129
            L      T  P        DLA         DV+ ID      +     + E   +  +
Sbjct: 156 ALNCEQGPTPTPCGTCQSCRDLAC--GGPGSIDVIEIDAASHGGVDDARDLRERAFFAPV 213

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                  ++ E             + V+        I ATT    +   ++ R       
Sbjct: 214 HSRYKIYIIDEAHMVTPQGFNALLKLVEEPPPHVKFIFATTEPEKVIGTIRSR-THHYPF 272

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                + L   +       G+ V       +     G+ R +  +L ++   A   H
Sbjct: 273 RLVPPKVLVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVLDQLLGGAADGH 329


>gi|302843932|ref|XP_002953507.1| DNA replication factor C complex subunit 5 [Volvox carteri f.
           nagariensis]
 gi|300261266|gb|EFJ45480.1| DNA replication factor C complex subunit 5 [Volvox carteri f.
           nagariensis]
          Length = 356

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 74/236 (31%), Gaps = 37/236 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP++L+E     +    +K            L H+L  GPPG GKT+    VAR
Sbjct: 37  PWVEKYRPKSLDEVAAHKQIIDTIKRL-----TNENRLPHLLLYGPPGTGKTSTILAVAR 91

Query: 77  ------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-DVLFIDEIHRLSIIVEE 123
                       EL  +       V  +  D A+  T   ++  ++ +DE   ++   + 
Sbjct: 92  QIYGSSMANMTLELNASDERGISVVRQEIQDFASTRTIFSNKFKLIILDECDAMTNDAQF 151

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
            L   +E +                              V  +   LQ R     R    
Sbjct: 152 ALRRVIEKYTR------------------NARFCLICNYVSKVIPALQSRC-TKFRFAPL 192

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           + + +   +Q  A    + +   A   +     G  R +  +L+      +V   +
Sbjct: 193 DPQFVHERLQYVASTERVNLGSGALDAVVELGNGDMRRSLNILQSCHLAFDVVDQQ 248


>gi|197692437|dbj|BAG70182.1| replication factor C 2 isoform 1 [Homo sapiens]
          Length = 354

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 77/227 (33%), Gaps = 38/227 (16%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   +   RP  L E  G  +  S L+VF     AR   + +++  GPPG GKTT    +
Sbjct: 35  ELPWVEKYRPVKLNEIVGNEDTVSRLEVF-----AREGNVPNIIIAGPPGTGKTTSILCL 89

Query: 75  AR------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIHRLSII 120
           AR            EL  +       V  K    A     L      ++ +DE   ++  
Sbjct: 90  ARALLGPALKDAMLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDG 149

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            ++ L   ME +                   +RF    A      +  P+Q R  +    
Sbjct: 150 AQQALRRTMEIYSKT----------------TRF--ALACNASDKIIEPIQSRCAVLRYT 191

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
              + + L   +    +   +  TD+    I   ++G  R A   L+
Sbjct: 192 KLTDAQILTR-LMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQ 237


>gi|30687479|ref|NP_849695.1| emb1968 (embryo defective 1968); ATP binding / ATPase/ DNA binding
           / DNA clamp loader/ nucleoside-triphosphatase/
           nucleotide binding [Arabidopsis thaliana]
 gi|332192019|gb|AEE30140.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
          Length = 327

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 79/244 (32%), Gaps = 58/244 (23%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           ++  +      +   RP+ +++   Q E C                  H+LF GPPG GK
Sbjct: 1   MAPVLQSSQPWVEKYRPKQVKDVAHQEEVC-----------------PHMLFYGPPGTGK 43

Query: 68  TTLAQVVAR-------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------- 106
           TT A  +A              EL  +       V  K  D AA+      R        
Sbjct: 44  TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPS 103

Query: 107 -DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
             ++ +DE   ++   +  L   ME +                  ++RF  I     +  
Sbjct: 104 FKIIILDEADSMTEDAQNALRRTMETYS----------------KVTRFFFIC--NYISR 145

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           +  PL  R     R      E +   +       GL++  EA   ++  S+G  R A   
Sbjct: 146 IIEPLASRCA-KFRFKPLSEEVMSNRILHICNEEGLSLDGEALSTLSSISQGDLRRAITY 204

Query: 226 LRRV 229
           L+  
Sbjct: 205 LQSA 208


>gi|310831184|ref|YP_003969827.1| putative replication factor C subunit [Cafeteria roenbergensis
           virus BV-PW1]
 gi|309386368|gb|ADO67228.1| putative replication factor C subunit [Cafeteria roenbergensis
           virus BV-PW1]
          Length = 314

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 73/225 (32%), Gaps = 23/225 (10%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
                RP+ L E   Q E    +K  I+        L H++F GPPG GKT+    V  E
Sbjct: 7   WNEKYRPKKLNEIIHQNETILVIKNLID-----NHNLPHLIFYGPPGTGKTSTILAVCNE 61

Query: 78  LG------VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
           +             +         +   +  + ++ +        + II+ +        
Sbjct: 62  IFPDEIKYNRCFEFNASNDRGIKFIREKIKKISNQKIKNYPNTPHIKIIILD-------- 113

Query: 132 FQLDLMVGEGPSA--RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
            ++D +  +   A  R ++ + S             L  P+  R     R      + ++
Sbjct: 114 -EVDTLTTDSQYALRRIMENSSSNTRFCLICNYPNKLIEPIISRCA-QFRFKPIPTKIME 171

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
             +    K   +    +    I   S G  R++   L+R   + E
Sbjct: 172 EKLTDILKQEKIKNKKDITNLIIENSYGDLRLSISYLQRYYKYNE 216


>gi|307591376|ref|YP_003900175.1| DNA polymerase III subunits gamma and tau [Cyanothece sp. PCC 7822]
 gi|306986230|gb|ADN18109.1| DNA polymerase III, subunits gamma and tau [Cyanothece sp. PCC
           7822]
          Length = 477

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 62/328 (18%), Positives = 107/328 (32%), Gaps = 34/328 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+TL +  GQ    + L   I   +         LF GP G GKT+ A+++A+ L    
Sbjct: 11  RPQTLADLVGQQPIATTLTNAITTGRIA----PAYLFSGPRGTGKTSTARILAKSLNCLS 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV------EEILYPA--MEDFQL 134
                       D    + +    DV+ ID     S+        +    P    + + L
Sbjct: 67  EDNPTVTPCGQCDSCGAIASSNSLDVIEIDAASNNSVEQIRDLIEKSQFVPHNLYKVWIL 126

Query: 135 DLMVGEGPSA-----RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE---IE 186
           D        A     ++++    R   I  TT    L + +  R          +   IE
Sbjct: 127 DECHALSHFAIQALLKTLENPPERVVFILCTTEPERLGDTIISRCQRFNFRRESDSVIIE 186

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
            L  I QR      + +       IA   +G  R A  LL ++   +     + +     
Sbjct: 187 HLAAIAQR----ENITIDPHVLRLIAQHCQGGLRDAQCLLEQLSLLSNTLTPEQVYELTG 242

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
                 L +      + D     +I R      VG++ +    +     +E  I   + Q
Sbjct: 243 SVPEQDLLLLFNAIQEEDTE--QVIKRTRELYEVGLDPLVIAQNL----LEFHITALLAQ 296

Query: 307 QGFIQRTPRGRLLMPIAWQHL-GIDIPH 333
                   +   +    W+ L G++IP 
Sbjct: 297 TADNAELGK---VTASTWEILQGLNIPD 321


>gi|195170272|ref|XP_002025937.1| GL10197 [Drosophila persimilis]
 gi|194110801|gb|EDW32844.1| GL10197 [Drosophila persimilis]
          Length = 744

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 60/271 (22%), Positives = 98/271 (36%), Gaps = 24/271 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  EA   LK  +E  K          +    VL VGPPG GKT LA+ VA E 
Sbjct: 306 TFDDVKGCDEAKQELKEVVEFLKNPDKFSNLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 365

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F   +GP          A  +  L    + R   V+FIDEI  +       +     
Sbjct: 366 KVPFFHAAGPEFDEVLVGQGARRVRDLFKAAKARAPCVIFIDEIDSVGAKRTNSVLHPYA 425

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
           +  ++ ++ E               ++ AT R   L   L    RF + + ++  +    
Sbjct: 426 NQTINQLLSEMDGFHQNAG----VIVLGATNRRDDLDQALLRPGRFDVEVVVSTPDFTGR 481

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAM-RSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           K I+     LT +   D     +A   S  T      ++ +    A +  A+T+  +  +
Sbjct: 482 KEIL--SLYLTKILHDDIDLDMLARGTSGFTGADLENMINQAALRAAIDGAETVNMKHLE 539

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
            A  ++ +      +L       I     GG
Sbjct: 540 TARDKVLMGPERKARLPDEEANTITAYHEGG 570


>gi|224060747|ref|XP_002196271.1| PREDICTED: replication factor C (activator 1) 4, 37kDa [Taeniopygia
           guttata]
          Length = 362

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 80/242 (33%), Gaps = 34/242 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+ ++E   Q E  + LK  +E A      L ++LF GPPG GKT+     AR
Sbjct: 37  PWVEKYRPKNVDEVAFQDEVVAVLKKSLEGAD-----LPNLLFYGPPGTGKTSTILAAAR 91

Query: 77  ELGVNFRSTS------------GPVIAKAGDLAALLTNLEDR---------DVLFIDEIH 115
           EL                      VI +     A LT    R          ++ +DE  
Sbjct: 92  ELFGPDLFRQRVLELNASDERGIQVIREKVKAFAQLTASGSRSDGKMCPPFKIVILDEAD 151

Query: 116 RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
            ++   +  L   ME         +      +   +SR      +        PL D   
Sbjct: 152 SMTSAAQAALRRTMEKES------KTTRFCLICNYISRIIEPLTSRCSKFRFKPLSDSIQ 205

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
               L+  E E +K  +   A    + V++    +     +   R+ G      +   E+
Sbjct: 206 QQRLLDVSEKEHVK--ISNEAISYLVKVSEGDLRKAITFLQSATRLMGGKEITEKIITEI 263

Query: 236 AH 237
           A 
Sbjct: 264 AG 265


>gi|221059177|ref|XP_002260234.1| replication factor C3 [Plasmodium knowlesi strain H]
 gi|193810307|emb|CAQ41501.1| replication factor C3, putative [Plasmodium knowlesi strain H]
          Length = 344

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/215 (18%), Positives = 76/215 (35%), Gaps = 11/215 (5%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP  L +     +  S ++ F++  +     L H+L  GPPG GKT+    V +
Sbjct: 14  PWVEKYRPNVLNDIISHEQVISTIQKFVQKGE-----LPHLLLHGPPGTGKTSTILAVCK 68

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           EL    RS+    +  + D    +   + +   F +  +  +   E+     +   + D 
Sbjct: 69  ELYGESRSSFVLELNASDDRGISVVRDQIKT--FAESKNHYN-TCEKTALKLIILDEADH 125

Query: 137 MV--GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           M    +    R ++              V  +T  +Q R     R +  + E +      
Sbjct: 126 MTYPAQNAMRRIMENYAKNVRFCLLCNYVNKITPAIQSRC-TSFRFSPLKKEYMVNKALD 184

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
            AK   + +T +    +    RG  R     L+ V
Sbjct: 185 IAKSENVELTKDGLDSLIHVGRGDMRRILNCLQVV 219


>gi|331266204|ref|YP_004325834.1| DNA polymerase III subunits gamma and tau [Streptococcus oralis
           Uo5]
 gi|326682876|emb|CBZ00493.1| DNA polymerase III subunits gamma and tau [Streptococcus oralis
           Uo5]
          Length = 552

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 49/273 (17%), Positives = 82/273 (30%), Gaps = 55/273 (20%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     R +T  +  GQ      LK  +E      E + H  LF GP G GKT++A++ A
Sbjct: 4   ALYRKYRSQTFSQLVGQEVVAKTLKQAVE-----QEKISHAYLFSGPRGTGKTSVAKIFA 58

Query: 76  RELGVNFRS------------------------TSGPVIAKAGDLAALLTN------LED 105
           + +    +                                   ++  +         L  
Sbjct: 59  KAMNCPNQVDGEPCNNCYICQAVTEGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLAR 118

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
             V  IDE+H LS      L   +E+                         I ATT +  
Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPT------------------QNVVFILATTELHK 160

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           +   +  R       +    + +K  +Q       ++   +A   IA R+ G  R A  +
Sbjct: 161 IPATILSRVQRFEFKSIRTQD-IKDHIQAILSKENISSEPDAVEIIARRAEGGMRDALSI 219

Query: 226 LRRVRDFAEVAHAKTITREIADAALLRLAIDKM 258
           L +     +     T   E     +   A+D  
Sbjct: 220 LDQALSLTQGNALTTAISEEITGTISLSALDDY 252


>gi|297243104|ref|ZP_06927042.1| DNA polymerase III, gamma/tau subunits [Gardnerella vaginalis AMD]
 gi|296889315|gb|EFH28049.1| DNA polymerase III, gamma/tau subunits [Gardnerella vaginalis AMD]
          Length = 801

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 54/281 (19%), Positives = 92/281 (32%), Gaps = 26/281 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T +   GQ +    L   ++  K         LF GP G GKT+ A+++AR
Sbjct: 4   ALYRRYRPDTFDGVIGQDQVTIPLSRALDQGKITHAY----LFSGPRGCGKTSSARILAR 59

Query: 77  ELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PA 128
            +      TS P        DLA         DV+ ID      +     L       PA
Sbjct: 60  CINCEKGPTSHPCGECQSCKDLA--TGGAGSIDVVEIDAASHNGVDDARELRERAGFAPA 117

Query: 129 MEDFQLDLMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR---FGIP 177
            + +++ ++         G     + V+        I ATT    +   ++ R   +   
Sbjct: 118 RDRYKIFILDEAHMVTQQGFNALLKIVEEPPEHVMFIFATTEPDKVIGTIRSRTHHYPFR 177

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
           +         L+ I ++   L    V        A   R T  +  +L+    D +    
Sbjct: 178 LVPPEVMSPYLEDICKKEGILPQAGVLRLVMRAGAGSMRDTLSVLDQLMVGAVDGSISLD 237

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
           +          +L+   ID +  +        ++ R   GG
Sbjct: 238 SAVALLGFTPNSLISEFIDDL-INHDGASIYDVVRRVIVGG 277


>gi|313815375|gb|EFS53089.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL059PA1]
          Length = 948

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 47/237 (19%), Positives = 74/237 (31%), Gaps = 23/237 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T +E  G+      LK  I   +         LF GP G GKTT A+++AR
Sbjct: 100 ALYRRYRPETFDEVIGEDHVIEPLKRAILNNRVNHAY----LFSGPRGCGKTTTARILAR 155

Query: 77  ELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAM 129
            L      T  P        DLA         DV+ ID      +     + E   +  +
Sbjct: 156 ALNCEQGPTPTPCGTCQSCRDLAC--GGPGSIDVIEIDAASHGGVDDARDLRERAFFAPV 213

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                  ++ E             + V+        I ATT    +   ++ R       
Sbjct: 214 HSRYKIYIIDEAHMVTPQGFNALLKLVEEPPPHVKFIFATTEPEKVIGTIRSR-THHYPF 272

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                + L   +       G+ V       +     G+ R +  +L ++   A   H
Sbjct: 273 RLVPPKVLVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVLDQLLGGAADGH 329


>gi|313764794|gb|EFS36158.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL013PA1]
 gi|314930699|gb|EFS94530.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL067PA1]
 gi|328759443|gb|EGF73059.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL025PA2]
          Length = 982

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 47/237 (19%), Positives = 74/237 (31%), Gaps = 23/237 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T +E  G+      LK  I   +         LF GP G GKTT A+++AR
Sbjct: 134 ALYRRYRPETFDEVIGEDHVIEPLKRAILNNRVNHAY----LFSGPRGCGKTTTARILAR 189

Query: 77  ELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAM 129
            L      T  P        DLA         DV+ ID      +     + E   +  +
Sbjct: 190 ALNCEQGPTPTPCGTCQSCRDLAC--GGPGSIDVIEIDAASHGGVDDARDLRERAFFAPV 247

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                  ++ E             + V+        I ATT    +   ++ R       
Sbjct: 248 HSRYKIYIIDEAHMVTPQGFNALLKLVEEPPPHVKFIFATTEPEKVIGTIRSR-THHYPF 306

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                + L   +       G+ V       +     G+ R +  +L ++   A   H
Sbjct: 307 RLVPPKVLVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVLDQLLGGAADGH 363


>gi|282852745|ref|ZP_06262087.1| DNA polymerase III, subunit gamma and tau [Lactobacillus gasseri
           224-1]
 gi|282556487|gb|EFB62107.1| DNA polymerase III, subunit gamma and tau [Lactobacillus gasseri
           224-1]
          Length = 602

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 79/228 (34%), Gaps = 21/228 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPRT +    Q      LK  I     R +     LF GP G GKT+ A++ A+ L    
Sbjct: 11  RPRTFDGVVDQTAITDTLKNAI----KRGKISHAFLFAGPRGTGKTSCAKIFAKALNCTN 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P       LAA    +   D++ ID      +  +  I +++ Y   +      +
Sbjct: 67  LQDGEPCNECENCLAADKGTM--NDIIEIDAASNNGVDEIRDIRDKVKYAPTQGKYKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT +  +   +  R          + + +
Sbjct: 125 IDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRIDQHDLI 184

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
              +        +   ++A   IA  + G  R +  +L ++  + +  
Sbjct: 185 AR-MTYILGQEKIDFEEKALEVIAQVADGGMRDSLSILDQILSYDQDK 231


>gi|21703948|ref|NP_663455.1| replication factor C subunit 4 [Mus musculus]
 gi|81916548|sp|Q99J62|RFC4_MOUSE RecName: Full=Replication factor C subunit 4; AltName:
           Full=Activator 1 subunit 4
 gi|13097123|gb|AAH03335.1| Replication factor C (activator 1) 4 [Mus musculus]
 gi|74147363|dbj|BAE27563.1| unnamed protein product [Mus musculus]
 gi|148665244|gb|EDK97660.1| replication factor C (activator 1) 4 [Mus musculus]
          Length = 364

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 76/234 (32%), Gaps = 45/234 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+ ++E   Q E  + L+  +E A      L ++LF GPPG GKT+     AR
Sbjct: 39  PWVEKYRPKCVDEVAFQDEVVAVLRKSLEGAD-----LPNLLFYGPPGTGKTSTILAAAR 93

Query: 77  -------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD--------VLFIDEIH 115
                        EL  +       V  K  + A L  +    D        ++ +DE  
Sbjct: 94  ELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEAD 153

Query: 116 RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
            ++   +  L   ME                     +RF        V  +  PL  R  
Sbjct: 154 SMTSAAQAALRRTMEKESKT----------------TRF--CLICNYVSRIIEPLTSRCS 195

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
              R      +  +  +   A+   + + +E    +   S G  R A   L+  
Sbjct: 196 -KFRFKPLSDKIQQERLLDIAEKENVKIGNEEIAYLVKISEGDLRKAITFLQSA 248


>gi|322388028|ref|ZP_08061634.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus infantis
           ATCC 700779]
 gi|321141049|gb|EFX36548.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus infantis
           ATCC 700779]
          Length = 554

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 49/273 (17%), Positives = 81/273 (29%), Gaps = 55/273 (20%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     R +   +  GQ      LK  +E      + + H  LF GP G GKT++A++ A
Sbjct: 4   ALYRKYRSQNFSQLVGQEVVARTLKQAVE-----QDKISHAYLFSGPRGTGKTSVAKIFA 58

Query: 76  RELGVNFRS------------------------TSGPVIAKAGDLAALLTN------LED 105
           + +    +                                   ++  +         +  
Sbjct: 59  KAMNCPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIRDIRDKSTYAPSIAQ 118

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
             V  IDE+H LS      L   +E+                         I ATT +  
Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPT------------------PNVVFILATTELHK 160

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           +   +  R       +    +    I Q   +  G+    EA   IA R+ G  R A  +
Sbjct: 161 IPATILSRVQRFEFKSIKTQDIRDHIFQ-ILEKEGIDYETEAVEIIARRAEGGMRDALSI 219

Query: 226 LRRVRDFAEVAHAKTITREIADAALLRLAIDKM 258
           L +     + A   T   E     +   A+D  
Sbjct: 220 LDQALSLTQEATLTTAVSEEITGTISLSALDHY 252


>gi|303244085|ref|ZP_07330423.1| Replication factor C [Methanothermococcus okinawensis IH1]
 gi|302485470|gb|EFL48396.1| Replication factor C [Methanothermococcus okinawensis IH1]
          Length = 883

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 14/132 (10%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK--TTLAQ 72
           E   +   RP+TL+E TG  E    LK +++      +++ H+LF GPPG+GK  T   +
Sbjct: 2   EKPWVEKYRPKTLDEITGHDEIIKRLKSYVK-----KKSMPHMLFSGPPGVGKCLTGDTK 56

Query: 73  VVARELGVNFRSTSGPVIAKAGD---LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           V+      N     G ++ K  +    A L++N +D +VL IDE   +     + +Y   
Sbjct: 57  VIVN----NKIENLGDIVEKISNGRFGATLVSNPKDLNVLGIDEDGNIKRFNVQYVYKDK 112

Query: 130 EDFQLDLMVGEG 141
            +  + +    G
Sbjct: 113 TNKIIKIKTKYG 124



 Score = 41.2 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 47/238 (19%), Positives = 84/238 (35%), Gaps = 38/238 (15%)

Query: 62  PPGLGKTTLAQVVAR------------ELGVNFRSTSGPVIAKAGDLAALLT-NLEDRDV 108
           P  L  TT A  +AR            EL  +       +  K  D A           +
Sbjct: 610 PTVLHNTTAALCLARDLYGENWRDNFLELNSSDERGIDVIRTKVKDFARTKPIGDAPFKI 669

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +F+DE   L+   +  L   ME +                 ++ RF  I +      +  
Sbjct: 670 IFLDESDALTSDAQNALRRTMEKYS----------------DICRF--ILSCNYPSRIIP 711

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
           P+Q R  I  R +  + ED+   ++  A+  G+ + +     I   S G  R A  +L+ 
Sbjct: 712 PIQSRCAI-FRFSPLKREDIIKKIKEIAENEGITIDESGIDAIIYVSEGDLRKAINVLQT 770

Query: 229 VRDFAEVAHAKTITREIADA------ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV 280
               ++  + + I +  + A       +L LA++    +  +L Y  MI     G  +
Sbjct: 771 AATVSKNINDEIIYKVSSKARPDEIIKMLELALNNKFIEARELLYNLMIDWGMSGEDI 828


>gi|289743537|gb|ADD20516.1| replication factor C subunit RFC2 [Glossina morsitans morsitans]
          Length = 333

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 49/239 (20%), Positives = 82/239 (34%), Gaps = 39/239 (16%)

Query: 4   REGLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
            E + +    + +   I   RP   +E  G  E    L VF     A      +++  GP
Sbjct: 6   EERVAAEESRRHNMPWIEKYRPTKFDEIVGNEETVCRLSVFATQGNA-----PNIIIAGP 60

Query: 63  PGLGKTTLAQVVAR------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDV 108
           PG+GKTT  Q +AR            EL  +       V  K    A     L      +
Sbjct: 61  PGVGKTTTIQCLARILLGDSFKEAVLELNASNERGIDVVRNKIKMFAQQKVTLPKGRHKI 120

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           + +DE   ++   ++ L   ME +                 N +RF L   T+    +  
Sbjct: 121 VILDEADSMTEGAQQALRRTMEIYC----------------NTTRFALACNTSE--KIIE 162

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
           P+Q R  +       + + L  +++   +   L   +E    I   ++G  R A   L 
Sbjct: 163 PIQSRCAMLRFTKLSDAQVLAKVIE-VCQREELQYDEEGLEAIVFTAQGDMRQALNNLE 220


>gi|146276573|ref|YP_001166732.1| DNA polymerase III subunits gamma and tau [Rhodobacter sphaeroides
           ATCC 17025]
 gi|145554814|gb|ABP69427.1| DNA polymerase III, subunits gamma and tau [Rhodobacter sphaeroides
           ATCC 17025]
          Length = 582

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 63/300 (21%), Positives = 104/300 (34%), Gaps = 31/300 (10%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+T  +  GQ      LK    A +         +  G  G+GKTT A+++A+ L
Sbjct: 13  ARKYRPQTFADLIGQDAMVRTLKNAFAADRIAHA----FVMTGVRGVGKTTTARIIAKGL 68

Query: 79  GV-NFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEIL-----YPAME 130
                    GP     G   A  +  E R  DVL +D   R  +     +     Y A  
Sbjct: 69  NCVGPDGDGGPTTEPCGACEACRSIAEGRHVDVLEMDAASRTGVGDIREIIDSVHYRAAS 128

Query: 131 DFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
                 ++ E             ++++   +    I ATT +  +   +  R      L 
Sbjct: 129 ARYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLSRCQ-RFDLK 187

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
             E E +   + + A   G  +T +A   I   + G+ R A  L+    D A    A   
Sbjct: 188 RIEPEVMIAHLAKVADKEGARLTADALALITRAAEGSVRDAMSLM----DQAIAHGAGET 243

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T +   A L      ++  D  DL    ++  +  G    +    A  ++P   + DL E
Sbjct: 244 TADEVRAMLGLADRGRV-LDLFDL----VMKGDAAGALAELSGQYADGADPMAILRDLAE 298


>gi|269129109|ref|YP_003302479.1| DNA polymerase III subunits gamma and tau [Thermomonospora curvata
           DSM 43183]
 gi|268314067|gb|ACZ00442.1| DNA polymerase III, subunits gamma and tau [Thermomonospora curvata
           DSM 43183]
          Length = 715

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 43/239 (17%), Positives = 76/239 (31%), Gaps = 27/239 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T  E  GQ      L+  +   +         LF GP G GKT+ A+++AR
Sbjct: 4   ALYRKYRPATFAELKGQEHVAEPLQQALRNGRINHAY----LFSGPRGCGKTSSARILAR 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR----DVLFID-----EIHRLSIIVEEILYP 127
            L        GP     G   + +          DV+ ID      I     + E   + 
Sbjct: 60  SLNCE----QGPTPDPCGKCESCVALGPGGSGHIDVIEIDAASHGGIDDARDLRERAFFA 115

Query: 128 AMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            +       ++ E             + V+        + ATT    +   ++ R     
Sbjct: 116 PVSARFKVYIIDEAHMVTTGGFNALLKLVEEPPPHLKFVFATTEPDKVIGTIRSR-THHY 174

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                    L+ +V+   +  G+     A   +     G+ R    +L ++   A+ + 
Sbjct: 175 PFRLLPPGTLRELVEEVLQSEGVPYEPAALPLVVRAGAGSARDTLSILDQLVAGADESG 233


>gi|190346315|gb|EDK38368.2| hypothetical protein PGUG_02466 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 819

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 60/286 (20%), Positives = 101/286 (35%), Gaps = 30/286 (10%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLED 105
           E    VL  GPPG GKTT+A  +A EL V F + S P +           L  +    + 
Sbjct: 219 EPPRGVLLYGPPGCGKTTIANALAGELKVPFLNISAPSVVSGMSGESEKKLREIFDEAKS 278

Query: 106 RD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
               ++FIDEI  ++   +      ME   +  ++         K +     +I AT R 
Sbjct: 279 LAPCLVFIDEIDAITPKRDGGAQREMERRIVAQLLTLMDELSLSKTDGKAVIVIGATNRP 338

Query: 164 GLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRI 221
             L + L+   RF   I LN        +I++  A    L + D  +      S+ TP  
Sbjct: 339 DSLDSALRRAGRFDREICLNVPGEAQRCSILK--AMTKQLKLQDPDSFNFVELSKRTPGY 396

Query: 222 AGRLLRRVRDFAEV------------AHAKTITREIADAALLRLAIDKMGFDQLDLRYLT 269
            G  L+ +   A +              A+ ++ E+    L           + +   L+
Sbjct: 397 VGADLKSLVTAAGISAIKRIFESLSEHEAELLSNEVNSMDLEMETDKSNFDSKSEAEKLS 456

Query: 270 MIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR 315
            I R     P  +        E    +    + +++    IQ T +
Sbjct: 457 TIQRFLMQHPNPLT------PEQLSPLAITYDDFLVALPTIQPTAK 496



 Score = 50.5 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 70/223 (31%), Gaps = 20/223 (8%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLED 105
           K    A   VL  GPPG GKT LA+ VA E   NF S  GP +     G+    +  L  
Sbjct: 537 KVGITAPAGVLMWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESEKAVRQLFQ 596

Query: 106 RD------VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA 159
           R       ++F DE+  L     +          ++ ++ E         +     ++ A
Sbjct: 597 RARASVPCIIFFDELDALVPRR-DTSLSESSSRVVNTLLTE----LDGLNDRKGIFVVGA 651

Query: 160 TTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQ---RGAKLTGLAVTDEAACEIAMR 214
           T R  ++   +    R    + +      +   I+Q   R       +  D        R
Sbjct: 652 TNRPDMIDPAMLRPGRLDKTLYIELPSSAERLEILQTLVRACGTPLASSVDLHTIAYDER 711

Query: 215 SRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257
            R         L  VR+   VA  K          L       
Sbjct: 712 CRNFSGADLSSL--VREAGVVALKKKFFHGQNIKDLDASGYYD 752


>gi|148825823|ref|YP_001290576.1| DNA polymerase III subunits gamma and tau [Haemophilus influenzae
           PittEE]
 gi|148715983|gb|ABQ98193.1| DNA polymerase III subunits gamma and tau [Haemophilus influenzae
           PittEE]
          Length = 688

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 51/282 (18%), Positives = 88/282 (31%), Gaps = 65/282 (23%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T  +  GQ    + L     A   +   L H  LF G  G+GKT++A++ A+ L   
Sbjct: 11  RPKTFADVVGQEHIITAL-----ANGLKDNRLHHAYLFSGTRGVGKTSIARLFAKGLNCV 65

Query: 82  F------------------------RSTSGPVIAKAGDLAALLTNLEDRDVL------FI 111
                                             K  D   LL N++ + V+       I
Sbjct: 66  HGVTATPCGECENCKAIEQGNFIDLIEIDAASRTKVEDTRELLDNVQYKPVVGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSRHSFNALLKTLEE------------------PPEYVKFLLATTDPQKLPVTIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L   +   +   +        +   + A  ++A  ++G+ R +  L     D
Sbjct: 168 SRC-LQFHLKALDETQISQHLAHILTQENIPFEEPALVKLAKAAQGSIRDSLSL----TD 222

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIAR 273
            A     + +T  +    L  L       D   +  L  + +
Sbjct: 223 QAIAMGDRQVTNSVVSNMLGLLD------DNYSVDILYALHQ 258


>gi|295129771|ref|YP_003580434.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           SK137]
 gi|50839298|gb|AAT81965.1| DNA polymerase III subunit gamma [Propionibacterium acnes
           KPA171202]
 gi|291376500|gb|ADE00355.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           SK137]
 gi|332674610|gb|AEE71426.1| DNA polymerase III subunit gamma/tau [Propionibacterium acnes 266]
          Length = 957

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 47/237 (19%), Positives = 74/237 (31%), Gaps = 23/237 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T +E  G+      LK  I   +         LF GP G GKTT A+++AR
Sbjct: 109 ALYRRYRPETFDEVIGEDHVIEPLKRAILNNRVNHAY----LFSGPRGCGKTTTARILAR 164

Query: 77  ELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAM 129
            L      T  P        DLA         DV+ ID      +     + E   +  +
Sbjct: 165 ALNCEQGPTPTPCGTCQSCRDLAC--GGPGSIDVIEIDAASHGGVDDARDLRERAFFAPV 222

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                  ++ E             + V+        I ATT    +   ++ R       
Sbjct: 223 HSRYKIYIIDEAHMVTPQGFNALLKLVEEPPPHVKFIFATTEPEKVIGTIRSR-THHYPF 281

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                + L   +       G+ V       +     G+ R +  +L ++   A   H
Sbjct: 282 RLVPPKVLVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVLDQLLGGAADGH 338


>gi|82595672|ref|XP_725945.1| helicase  [Plasmodium yoelii yoelii str. 17XNL]
 gi|23481145|gb|EAA17510.1| putative helicase RUVBL [Plasmodium yoelii yoelii]
          Length = 595

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 79/206 (38%), Gaps = 30/206 (14%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALD-HVLFVGPPGLGKTTLAQVVARELGV-----N 81
           E++    E  S     +   K   E L+ +++  GPPG GK++L  V+  +         
Sbjct: 169 EDYI--NEIRSKRNPLLT--KILDEDLNFNLILCGPPGSGKSSLINVIKNKTHNLFITLF 224

Query: 82  FRSTSGPVIAKAGDLAALLTNL-EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
             +     I +  D + +   L + R +L I +I+RL+   +E L   ++     L+   
Sbjct: 225 HLNNFNTEIRRIYDQSIINYKLSKRRMILCIKDINRLNKPQQEHLLLVLKKGYFYLLAT- 283

Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
                                 + +L   L  R  + + L+ Y+  +L  I++R      
Sbjct: 284 -----------------CLYNPMNILNASLSSRC-LYLYLSPYDKIELALIIKRIINKLN 325

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLL 226
           + + D A   I   S G  R+A  ++
Sbjct: 326 IEIEDNALNVIISHSSGDARVAINII 351


>gi|315099548|gb|EFT71524.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL059PA2]
          Length = 982

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 47/237 (19%), Positives = 74/237 (31%), Gaps = 23/237 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T +E  G+      LK  I   +         LF GP G GKTT A+++AR
Sbjct: 134 ALYRRYRPETFDEVIGEDHVIEPLKRAILNNRVNHAY----LFSGPRGCGKTTTARILAR 189

Query: 77  ELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAM 129
            L      T  P        DLA         DV+ ID      +     + E   +  +
Sbjct: 190 ALNCEQGPTPTPCGTCQSCRDLAC--GGPGSIDVIEIDAASHGGVDDARDLRERAFFAPV 247

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                  ++ E             + V+        I ATT    +   ++ R       
Sbjct: 248 HSRYKIYIIDEAHMVTPQGFNALLKLVEEPPPHVKFIFATTEPEKVIGTIRSR-THHYPF 306

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                + L   +       G+ V       +     G+ R +  +L ++   A   H
Sbjct: 307 RLVPPKVLVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVLDQLLGGAADGH 363


>gi|283782639|ref|YP_003373393.1| DNA polymerase III, subunit gamma and tau [Gardnerella vaginalis
           409-05]
 gi|283441569|gb|ADB14035.1| DNA polymerase III, subunit gamma and tau [Gardnerella vaginalis
           409-05]
          Length = 801

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 54/281 (19%), Positives = 92/281 (32%), Gaps = 26/281 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T +   GQ +    L   ++  K         LF GP G GKT+ A+++AR
Sbjct: 4   ALYRRYRPDTFDGVIGQDQVTIPLSRALDQGKITHAY----LFSGPRGCGKTSSARILAR 59

Query: 77  ELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PA 128
            +      TS P        DLA         DV+ ID      +     L       PA
Sbjct: 60  CINCEKGPTSHPCGECQSCKDLA--TGGAGSIDVVEIDAASHNGVDDARELRERAGFAPA 117

Query: 129 MEDFQLDLMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR---FGIP 177
            + +++ ++         G     + V+        I ATT    +   ++ R   +   
Sbjct: 118 RDRYKIFILDEAHMVTQQGFNALLKIVEEPPEHVMFIFATTEPDKVIGTIRSRTHHYPFR 177

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
           +         L+ I ++   L    V        A   R T  +  +L+    D +    
Sbjct: 178 LVPPEVMSPYLEDICKKEGILPQPGVLRLVMRAGAGSMRDTLSVLDQLMVGAVDGSISLD 237

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
           +          +L+   ID +  +        ++ R   GG
Sbjct: 238 SAVALLGFTPNSLISEFIDDL-INHDGASIYDVVRRVIVGG 277


>gi|328718995|ref|XP_001946697.2| PREDICTED: ATP-dependent zinc metalloprotease YME1 homolog
           [Acyrthosiphon pisum]
          Length = 710

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 54/231 (23%), Positives = 83/231 (35%), Gaps = 26/231 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  EA   L+  +E  K          +    VL VGPPG GKT LA+ VA E 
Sbjct: 272 TFNDVKGVDEAKQELRDIVEFLKHPSKFSSLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 331

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F   +G           A  +  L    +++   V+FIDEI  +       +     
Sbjct: 332 GVPFFHAAGSEFDEILVGQGARRIRDLFKAAKEKSPCVIFIDEIDSVGAKRTNSVLHPYA 391

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
           +  ++ ++ E       +       ++ AT R   L   L    RF I + +   +    
Sbjct: 392 NQTINQLLTEMDGFHQNQ----NIIVLGATNRREDLDRALLRPGRFDIEVDVPLPDYAGR 447

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           K I+    K       D         +RGT    G  +  + + A V  A 
Sbjct: 448 KQILDLYLKKILSKDIDVDLL-----ARGTSGFTGADIENMVNQAAVKAAS 493


>gi|31563534|ref|NP_852136.1| replication factor C subunit 2 isoform 1 [Homo sapiens]
 gi|2507300|sp|P35250|RFC2_HUMAN RecName: Full=Replication factor C subunit 2; AltName:
           Full=Activator 1 40 kDa subunit; Short=A1 40 kDa
           subunit; AltName: Full=Activator 1 subunit 2; AltName:
           Full=Replication factor C 40 kDa subunit; Short=RF-C 40
           kDa subunit; Short=RFC40
 gi|1590811|gb|AAB09786.1| replication factor C, 40-kDa subunit [Homo sapiens]
 gi|2914760|gb|AAC04860.1| replication factor C subunit 2 [Homo sapiens]
 gi|30172692|gb|AAP22334.1| unknown [Homo sapiens]
 gi|119590013|gb|EAW69607.1| replication factor C (activator 1) 2, 40kDa, isoform CRA_b [Homo
           sapiens]
 gi|119590014|gb|EAW69608.1| replication factor C (activator 1) 2, 40kDa, isoform CRA_b [Homo
           sapiens]
 gi|197692187|dbj|BAG70057.1| replication factor C 2 isoform 1 [Homo sapiens]
 gi|208967280|dbj|BAG73654.1| replication factor C (activator 1) 2 [synthetic construct]
          Length = 354

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 77/227 (33%), Gaps = 38/227 (16%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   +   RP  L E  G  +  S L+VF     AR   + +++  GPPG GKTT    +
Sbjct: 35  ELPWVEKYRPVKLNEIVGNEDTVSRLEVF-----AREGNVPNIIIAGPPGTGKTTSILCL 89

Query: 75  AR------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIHRLSII 120
           AR            EL  +       V  K    A     L      ++ +DE   ++  
Sbjct: 90  ARALLGPALKDAMLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDG 149

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            ++ L   ME +                   +RF    A      +  P+Q R  +    
Sbjct: 150 AQQALRRTMEIYSKT----------------TRF--ALACNASDKIIEPIQSRCAVLRYT 191

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
              + + L   +    +   +  TD+    I   ++G  R A   L+
Sbjct: 192 KLTDAQILTR-LMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQ 237


>gi|262375322|ref|ZP_06068555.1| DNA polymerase III [Acinetobacter lwoffii SH145]
 gi|262309576|gb|EEY90706.1| DNA polymerase III [Acinetobacter lwoffii SH145]
          Length = 710

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 52/262 (19%), Positives = 79/262 (30%), Gaps = 57/262 (21%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RPR   E  GQ          + +A  R       LF G  G+GKTT+A+++A+ L
Sbjct: 6   ARKYRPRNFNELVGQNHV----SRALTSALERGRLHHAYLFTGTRGVGKTTIARILAKCL 61

Query: 79  GVNFRSTS------------------------GPVIAKAGDLAALLTNL------EDRDV 108
                 TS                             K  D   LL N+          V
Sbjct: 62  NCETGITSTPCEVCATCTAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKV 121

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
             IDE+H LS      L   +E+                         + ATT    L  
Sbjct: 122 YLIDEVHMLSTHSFNALLKTLEE------------------PPEHVKFLFATTDPQKLPI 163

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            +  R  +   L    ++++   +        +    +A  +IA  ++G+ R A  L   
Sbjct: 164 TVISRC-LQFTLRPLAVDEITEHLGNILSKESIQSDQDAIWQIAESAQGSLRDALSL--- 219

Query: 229 VRDFAEVAHAKTITREIADAAL 250
             D A       I  +     L
Sbjct: 220 -TDQAIAYGQGVIQHQDVKDML 240


>gi|71903770|ref|YP_280573.1| DNA polymerase III subunits gamma and tau [Streptococcus pyogenes
           MGAS6180]
 gi|71802865|gb|AAX72218.1| DNA polymerase III subunit gamma/tau [Streptococcus pyogenes
           MGAS6180]
          Length = 561

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 56/304 (18%), Positives = 99/304 (32%), Gaps = 48/304 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     R +T +E  GQ    + LK  +E+ K         LF GP G GKT+ A++ A+
Sbjct: 4   ALYRKYRSQTFDEMVGQSVISTTLKQAVESGKISHAY----LFSGPRGTGKTSAAKIFAK 59

Query: 77  ELGVNFR---------------------------STSGPVIAKAGDLAALLTNLEDR--- 106
            +    +                           + S   + +  D+    T    R   
Sbjct: 60  AMNCPNQVDGEPCNQCDICRDITNGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSRATY 119

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDFQ--LDLMVGEGPSARSVKINLSRFTLIAATTRVG 164
            V  IDE+H LS      L   +E+    +  ++      +     LSR           
Sbjct: 120 KVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKQ 179

Query: 165 LLTNPLQDRFGIPIRLN--FYEIEDLKTIVQRGAKLTGLA-VTDEAACEIAMRSRGTPRI 221
                +++     +      YE++ L  I +R       A    + A  ++  ++ T  I
Sbjct: 180 ---KAIREHLAWVLDKEGIAYEVDALNLIARRAEGGMRDALSILDQALSLSPDNQVTIAI 236

Query: 222 AGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDL------RYLTMIARNF 275
           A  +   +   A   + + +++E A  AL  L         +         YL  +    
Sbjct: 237 AEEITGSISMLALGDYVRYVSQEQATQALAALETIYDSGKSMSRFATDLLTYLRDLLVVK 296

Query: 276 GGGP 279
            GG 
Sbjct: 297 AGGD 300


>gi|319938988|ref|ZP_08013352.1| DNA polymerase III subunit gamma/tau [Streptococcus anginosus
           1_2_62CV]
 gi|319812038|gb|EFW08304.1| DNA polymerase III subunit gamma/tau [Streptococcus anginosus
           1_2_62CV]
          Length = 554

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 47/271 (17%), Positives = 85/271 (31%), Gaps = 55/271 (20%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     R +T  +  GQ    + L+  +E      + + H  LF GP G GKT++A++ A
Sbjct: 4   ALYRKYRSQTFGQLVGQEVVATTLRQAVE-----QDKISHAYLFSGPRGTGKTSVAKIFA 58

Query: 76  RELGVNFR------------------------STSGPVIAKAGDLAALLTN------LED 105
           + +    +                                   ++  +         L  
Sbjct: 59  KAMNCPNQKDGEPCNDCYICQAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLAK 118

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
             V  IDE+H LS      L   +E+                         I ATT +  
Sbjct: 119 HKVYIIDEVHMLSTGAFNALLKTLEEPT------------------ENVVFILATTELHK 160

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           +   +  R       +    + ++ I +   +   +   +EA   IA R+ G  R A  +
Sbjct: 161 IPATILSRVQRFEFKSIKTKDIVEHI-EWILQQENIDFENEAVQIIARRAEGGMRDALSI 219

Query: 226 LRRVRDFAEVAHAKTITREIADAALLRLAID 256
           L +     +     T   E    ++   A+D
Sbjct: 220 LDQALSLTQDNQLTTAISEEITGSISLGALD 250


>gi|194757108|ref|XP_001960807.1| GF11321 [Drosophila ananassae]
 gi|190622105|gb|EDV37629.1| GF11321 [Drosophila ananassae]
          Length = 740

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 60/271 (22%), Positives = 99/271 (36%), Gaps = 24/271 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T E+  G  EA   LK  +E  K          +    VL VGPPG GKT LA+ VA E 
Sbjct: 302 TFEDVKGCDEAKQELKEVVEFLKNPEKFSNLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F   +GP          A  +  L    + R   V+FIDEI  +       +     
Sbjct: 362 KVPFFHAAGPEFDEVLVGQGARRVRDLFKAAKARAPCVIFIDEIDSVGAKRTNSVLHPYA 421

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
           +  ++ ++ E               ++ AT R   L   L    RF + + ++  +    
Sbjct: 422 NQTINQLLSEMDGFHQNAG----VIVLGATNRRDDLDQALLRPGRFDVEVMVSTPDFTGR 477

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAM-RSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           K I+     LT +   +     +A   S  T      ++ +    A +  A+T++ +  +
Sbjct: 478 KEIL--SLYLTKILHDEIDLDMLARGTSGFTGADLENMINQAALRAAIDGAETVSMKHLE 535

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
            A  ++ +      +L       I     GG
Sbjct: 536 TARDKVLMGPERKQRLPDEEANTITAYHEGG 566


>gi|145636909|ref|ZP_01792574.1| DNA polymerase III subunits gamma and tau [Haemophilus influenzae
           PittHH]
 gi|145269990|gb|EDK09928.1| DNA polymerase III subunits gamma and tau [Haemophilus influenzae
           PittHH]
          Length = 688

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 53/282 (18%), Positives = 91/282 (32%), Gaps = 65/282 (23%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T  +  GQ    + L     A   +   L H  LF G  G+GKT++A++ A+ L   
Sbjct: 11  RPKTFADVVGQEHIITAL-----ANGLKDNRLHHAYLFSGTRGVGKTSIARLFAKGLNCV 65

Query: 82  FRSTSGP------------------------VIAKAGDLAALLTNLEDRDVL------FI 111
              T+ P                           K  D   LL N++ + V+       I
Sbjct: 66  HGVTATPCGECENCKAIEQGNFIDLIEIDSASRTKVEDTRELLDNVQYKPVVGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSRHSFNALLKTLEE------------------PPEYVKFLLATTDPQKLPVTIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L   +   +   +        +   + A  ++A  ++G+ R +  L     D
Sbjct: 168 SRC-LQFHLKALDETQISQHLAHILTQENIPFEEPALVKLAKAAQGSIRDSLSL----TD 222

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIAR 273
            A     + +T  +    L  L       D   +  L  + +
Sbjct: 223 QAIAMGDRQVTNNVVSNMLGLLD------DNYSVDILYALHQ 258


>gi|281204159|gb|EFA78355.1| replication factor C subunit [Polysphondylium pallidum PN500]
          Length = 319

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 56/291 (19%), Positives = 96/291 (32%), Gaps = 42/291 (14%)

Query: 1   MMDREGLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M  R  + S   S      +   RP+ +++  G  E  S L+     + +    L +++ 
Sbjct: 1   MRTRIDMFSSAKSDALLPWVEKYRPKEIKDIVGNEETVSRLE-----SISMDGNLPNIII 55

Query: 60  VGPPGLGKTTLAQVVAR------------ELGVNFRSTSGPVIAKAGDLAALLTNL--ED 105
            GPPG GKTT    +A+            EL  +   T   V  K    A     L    
Sbjct: 56  SGPPGTGKTTSILCLAQQLLGPNYKEAVYELNASDDRTLDVVRDKIKTFAQTKVTLPPGR 115

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
             ++ +DE   ++   ++ L   ME +                   S      A  +   
Sbjct: 116 HKIIILDEADSMTSGAQQALRRIMEIYS------------------STTRFALACNQSSK 157

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           +  P+Q R  +       + + LK  ++   +   +  TD+    +   + G  R A   
Sbjct: 158 IIEPIQSRCAVLRYTRLTDAQVLKR-LREVIEAEKVPYTDDGLEALIFTAEGDMRQALNN 216

Query: 226 LRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTM-IARNF 275
           L+      E+     + R  AD         K   D  D  Y +M I   F
Sbjct: 217 LQSTFTGFEMVSGDNVFRHCADGRFE--DAFKNTKDLWDKGYSSMDIISTF 265


>gi|55821183|ref|YP_139625.1| DNA polymerase III subunits gamma and tau [Streptococcus
           thermophilus LMG 18311]
 gi|55737168|gb|AAV60810.1| DNA polymerase III subunits gamma / tau [Streptococcus thermophilus
           LMG 18311]
          Length = 550

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 52/258 (20%), Positives = 91/258 (35%), Gaps = 27/258 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     R +T  E  GQ    + L+  +E+ K         LF GP G GKT+ A++ A+
Sbjct: 4   ALYRKYRSQTFGEMVGQKVISTTLRQAVESGKISHAY----LFSGPRGTGKTSAAKIFAK 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +    +    P      D+   +TN    DV+ ID      +  +  I ++  Y     
Sbjct: 60  AMNCPNQVDGEPCNHC--DICRDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRA 117

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQD---RFGIPIR 179
                ++ E             ++++        I ATT +  +   +     RF     
Sbjct: 118 TYKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSI 177

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
                 E L +I++      GL   DEA   I+  + G  R A  +L +    +   +  
Sbjct: 178 KQGAIKEHLASILE----KEGLTFDDEALTIISRHAEGGMRDALSILDQALSLSADNNVS 233

Query: 240 TITREIADAALLRLAIDK 257
               E    ++   A+D 
Sbjct: 234 QSVAEEITGSIGLTALDS 251


>gi|302851817|ref|XP_002957431.1| DNA replication factor C complex subunit 2 [Volvox carteri f.
           nagariensis]
 gi|300257235|gb|EFJ41486.1| DNA replication factor C complex subunit 2 [Volvox carteri f.
           nagariensis]
          Length = 335

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 80/228 (35%), Gaps = 38/228 (16%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   +   RP+ + E  G +EA + L+V  E        + +V+  GPPG GKTT    +
Sbjct: 18  ELPWLEKYRPQYIHEIVGNMEAVARLQVIAEEG-----NMPNVILAGPPGTGKTTSILCL 72

Query: 75  AR------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIHRLSII 120
           A             EL  +       V  K    A     L      ++ +DE   ++  
Sbjct: 73  AHQLLGPTYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTAG 132

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            ++ L   ME +                 N +RF    A  +   +  P+Q R  I    
Sbjct: 133 AQQALRRTMEIYS----------------NTTRF--ALACNQSSKIIEPIQSRCAIVRYS 174

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
              +++ L   ++   +  G+   DE    +   + G  R A   L+ 
Sbjct: 175 RISDVDILSR-LRLVCEKEGVTYNDEGMEALIFTADGDMRQALNNLQA 221


>gi|224076090|ref|XP_002192040.1| PREDICTED: similar to replication factor C (activator 1) 2
           [Taeniopygia guttata]
          Length = 271

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 83/232 (35%), Gaps = 38/232 (16%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
             +  +++ +   RP  L E  G  +  S L+VF     A+   + +++  GPPG GKTT
Sbjct: 44  SQLPGQESLVEKYRPMKLSEIVGNEDTVSRLEVF-----AKEGNVPNIIIAGPPGTGKTT 98

Query: 70  LAQVVAR------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIH 115
               +AR            EL  +       V  K    A     L      ++ +DE  
Sbjct: 99  SILCLARALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEAD 158

Query: 116 RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
            ++   ++ L   ME +                   +RF    A      +  P+Q R  
Sbjct: 159 SMTDGAQQALRRTMEIYSKT----------------TRF--ALACNASDKIIEPIQSRCA 200

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
           +       + + L  +++   +   +A TD+    I   ++G  R A   L+
Sbjct: 201 VLRYTKLTDAQILARLLK-IVEKEDVAYTDDGLEAIIFTAQGDMRQALNNLQ 251


>gi|11498795|ref|NP_070024.1| replication factor C large subunit [Archaeoglobus fulgidus DSM
           4304]
 gi|42559326|sp|O29072|RFCL_ARCFU RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit;
           AltName: Full=afRFC large subunit; Short=afRFCla
 gi|2649392|gb|AAB90051.1| activator 1, replication factor C, 53 KD subunit [Archaeoglobus
           fulgidus DSM 4304]
          Length = 479

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 82/222 (36%), Gaps = 12/222 (5%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
            +   RP+TLEE        + +  + ++ K  ++ L   L  GPPG+GKT+LA  +A  
Sbjct: 3   WVEKYRPKTLEEVVADKSIITRVIKWAKSWKRGSKPL---LLAGPPGVGKTSLALALANT 59

Query: 78  LGVNFRSTSGPVIAKAGDLAALL-TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           +G      +         +  ++     +  +   DE   LS  + ++    +++  +D 
Sbjct: 60  MGWEAVELNASDQRSWRVIERIVGEGAFNETIS--DEGEFLSSRIGKLKLIILDE--VDN 115

Query: 137 MVGE----GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           +  +    G +A    I       +          +P        I       + +  ++
Sbjct: 116 IHKKEDVGGEAALIRLIKRKPAQPLILIANDPYKLSPELRNLCEMINFKRLTKQQVARVL 175

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
           +R A   G+ V      +IA  + G  R A    + + +  E
Sbjct: 176 ERIALKEGIKVDKSVLLKIAENAGGDLRAAINDFQALAEGKE 217


>gi|291548744|emb|CBL25006.1| DNA polymerase III, subunits gamma and tau [Ruminococcus torques
           L2-14]
          Length = 530

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 83/230 (36%), Gaps = 21/230 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP   E+  GQ    + L+  I+A +         LF G  G GKTT+A++ A+
Sbjct: 5   ALYRKFRPSEFEDVKGQDHIVTTLQNQIKANRIGHAY----LFCGTRGTGKTTVAKIFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +         P      ++   +      +V+ ID      +  +  I EE+ Y   E 
Sbjct: 61  AVNCEHPVNGSP--CGECEMCKSIAAGTSMNVIEIDAASNNGVDNIREIREEVTYRPTEG 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT V  +   +  R         
Sbjct: 119 KYKVYIIDEVHMLSIGAFNALLKTLEEPPEYVIFILATTEVHKIPITILSRCQHYDFKRI 178

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
             IE +   ++   +   + V ++A   IA  + G+ R A  LL +   F
Sbjct: 179 -SIETITDRMRDLMQTEQVEVEEKALRYIAKAADGSMRDALSLLDQCIAF 227


>gi|114613995|ref|XP_001149874.1| PREDICTED: replication factor C subunit 2 isoform 4 [Pan
           troglodytes]
          Length = 354

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 77/227 (33%), Gaps = 38/227 (16%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   +   RP  L E  G  +  S L+VF     AR   + +++  GPPG GKTT    +
Sbjct: 35  ELPWVEKYRPVKLNEIVGNEDTVSRLEVF-----AREGNVPNIIIAGPPGTGKTTSILCL 89

Query: 75  AR------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIHRLSII 120
           AR            EL  +       V  K    A     L      ++ +DE   ++  
Sbjct: 90  ARALLGPALKDAMLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDG 149

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            ++ L   ME +                   +RF    A      +  P+Q R  +    
Sbjct: 150 AQQALRRTMEIYSKT----------------TRF--ALACNASDKIIEPIQSRCAVLRYT 191

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
              + + L   +    +   +  TD+    I   ++G  R A   L+
Sbjct: 192 KLTDAQILTR-LMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQ 237


>gi|124803745|ref|XP_001347804.1| conserved Plasmodium protein [Plasmodium falciparum 3D7]
 gi|23496055|gb|AAN35717.1| conserved Plasmodium protein [Plasmodium falciparum 3D7]
          Length = 707

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 42/211 (19%), Positives = 81/211 (38%), Gaps = 30/211 (14%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALD-HVLFVGPPGLGKTTLAQVVARELGV-----N 81
           E+F    E  S     I   K   E L+ +++  GPPG GK++L  V+  +         
Sbjct: 190 EDFI--SEIRSKKNPLIT--KILDEDLNFNLILCGPPGSGKSSLVNVIRNKTNNCFISLF 245

Query: 82  FRSTSGPVIAKAGDLAALLTNL-EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140
             +     + K  D + +   + + + +L I +I+RL+   +E L   ++     L+   
Sbjct: 246 HLNNLNNELRKVYDKSVINYKISKKKSILCIKDINRLNKSQQENLLLILKKGYFYLLAT- 304

Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
                                 + +L   L  R  + + LN YE  +L+ I++R      
Sbjct: 305 -----------------CLFNPMNILNASLSSRC-LYLYLNSYEKTELELIIKRITNKLD 346

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
           + + ++A   I   S G  R+A  ++     
Sbjct: 347 IQIEEDALNLIMNHSCGDARVAINIIDFAVQ 377


>gi|114614001|ref|XP_001149802.1| PREDICTED: similar to replication factor C, 40-kDa subunit isoform
           3 [Pan troglodytes]
          Length = 325

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 77/227 (33%), Gaps = 38/227 (16%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   +   RP  L E  G  +  S L+VF     AR   + +++  GPPG GKTT    +
Sbjct: 35  ELPWVEKYRPVKLNEIVGNEDTVSRLEVF-----AREGNVPNIIIAGPPGTGKTTSILCL 89

Query: 75  AR------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIHRLSII 120
           AR            EL  +       V  K    A     L      ++ +DE   ++  
Sbjct: 90  ARALLGPALKDAMLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDG 149

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            ++ L   ME +                   +RF    A      +  P+Q R  +    
Sbjct: 150 AQQALRRTMEIYSKT----------------TRF--ALACNASDKIIEPIQSRCAVLRYT 191

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
              + + L   +    +   +  TD+    I   ++G  R A   L+
Sbjct: 192 KLTDAQILTR-LMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQ 237


>gi|296419853|ref|XP_002839506.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295635667|emb|CAZ83697.1| unnamed protein product [Tuber melanosporum]
          Length = 358

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 55/295 (18%), Positives = 95/295 (32%), Gaps = 39/295 (13%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           S   + E   +   RP  LE+  G  E    LK+       +   + H++  G PG+GKT
Sbjct: 23  SGTPAYELPWVEKYRPIFLEDIVGNSETVERLKII-----GKDGNMPHLIISGMPGIGKT 77

Query: 69  TLAQVVAR------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEI 114
           T    +AR            EL  +       V  +    A     L    + V+ +DE 
Sbjct: 78  TSVLCLARALLGDAYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRQKVVILDEA 137

Query: 115 HRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRF 174
             ++   ++ L   ME +                   S      A  +   +  PLQ R 
Sbjct: 138 DSMTAGAQQALRRTMEIYS------------------STTRFAFACNQSNKIIEPLQSRC 179

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA-GRLLRRVRDFA 233
            I       + + L  +++       +  ++E    +   + G  R A   L   V  F 
Sbjct: 180 AILRYSRLTDAQVLHRLLE-ICLAEKVEHSEEGLAALIFSAEGDMRQAINNLQSTVAGFG 238

Query: 234 EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAG 288
            V+         +   +   A+ K  +       L  +   +G G   I+ IS  
Sbjct: 239 FVSADNVFKVVDSPHPIAVQALIKACYTGKIDAALEKLEELWGKGYSAIDIISTM 293


>gi|270015972|gb|EFA12420.1| replication factor C 40kD subunit [Tribolium castaneum]
          Length = 512

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 80/231 (34%), Gaps = 38/231 (16%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
             +     I   RP+T +E  G  +  + L V      A+   L +++  GPPG+GKTT 
Sbjct: 189 QKADNLPWIEKYRPQTFQEIVGNEDTTNRLSVI-----AKQGNLPNLIIAGPPGVGKTTT 243

Query: 71  AQVVAR------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIHR 116
              +AR            EL  +       V  K    A     L      ++ +DE+  
Sbjct: 244 ILCLARILLGPAFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIIILDEVDS 303

Query: 117 LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
           ++   ++ L   ME +                 N +RF    A      +   +Q R  I
Sbjct: 304 MTEGAQQALRRTMEIYS----------------NTTRF--ALACNYSEKVIEAIQSRCAI 345

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
                  + + L  ++Q   +   +  T +    I   ++G  R A   L+
Sbjct: 346 LRYSRLTDAQVLARVIQ-VCQQESVEYTQDGLEAIVFTAQGDMRQALNNLQ 395


>gi|227501007|ref|ZP_03931056.1| cell division protein FtsH [Anaerococcus tetradius ATCC 35098]
 gi|227216780|gb|EEI82178.1| cell division protein FtsH [Anaerococcus tetradius ATCC 35098]
          Length = 655

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 57/247 (23%), Positives = 101/247 (40%), Gaps = 27/247 (10%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKARAE-------ALDHVLFVGPPGLGKTTLAQVVARE 77
           +T ++  GQ EA  +L   ++      +           VL VGPPG GKT +A+ VA E
Sbjct: 170 KTFKDVAGQEEAKDSLSEIVDFLHKPGKYKEIGAKVPKGVLLVGPPGTGKTLMAKAVAGE 229

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
             V F S SG           A  +  L    +++   ++FIDEI  +    +   Y   
Sbjct: 230 ANVPFFSISGSEFVEMFVGMGASKVRDLFKQAKEKAPCIVFIDEIDAIGKKRDVSGYSGN 289

Query: 130 EDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           ++ +  L  ++ E     + +       L+AAT R  +L   L    RF   +++   ++
Sbjct: 290 DEREQTLNQLLNEMDGFDATEG----VVLLAATNRPEILDPALTRPGRFDRQVQVELPDL 345

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           +  + I++  AK       D    EIA R+ GT   +G  L  + +   +   +   +++
Sbjct: 346 KGREDILKVHAKNIKRE-DDIDYEEIAKRTAGT---SGADLANIVNEGALRAVREGRKKL 401

Query: 246 ADAALLR 252
               L  
Sbjct: 402 TQEDLEE 408


>gi|195038153|ref|XP_001990525.1| GH18198 [Drosophila grimshawi]
 gi|193894721|gb|EDV93587.1| GH18198 [Drosophila grimshawi]
          Length = 356

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 49/241 (20%), Positives = 80/241 (33%), Gaps = 44/241 (18%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RPR++++   Q E  + L+  +E A      L ++L  GPPG GKT+     AR
Sbjct: 34  PWVEKYRPRSVDDVVEQSEVVAVLRKCVEGAD-----LPNMLLYGPPGTGKTSTILAAAR 88

Query: 77  ------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD--------VLFIDEIHR 116
                       EL  +       V  K  + A L  +    D        ++ +DE   
Sbjct: 89  QIFGDMYRERILELNASDERGINVVRTKIKNFAQLTASSVRPDGRPCPPFKIIVLDEADS 148

Query: 117 LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
           ++   +  L   ME             +RS +  L           V  +  P+  R   
Sbjct: 149 MTHAAQAALRRTMEK-----------ESRSTRFCL-------ICNYVSRIIVPITSRCS- 189

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
             R        + T +Q    L  +++  +A   I   S G  R A   L+         
Sbjct: 190 KFRFKALGETQIITRLQHICDLESVSIEPDAYQSIVKISGGDMRRAITTLQSCYRLKGAE 249

Query: 237 H 237
           H
Sbjct: 250 H 250


>gi|124249278|ref|NP_001074372.1| replication factor C subunit 2 [Bos taurus]
 gi|122131746|sp|Q05B83|RFC2_BOVIN RecName: Full=Replication factor C subunit 2; AltName:
           Full=Activator 1 subunit 2
 gi|115545402|gb|AAI22636.1| Replication factor C (activator 1) 2, 40kDa [Bos taurus]
 gi|296472929|gb|DAA15044.1| replication factor C subunit 2 [Bos taurus]
          Length = 352

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 79/227 (34%), Gaps = 38/227 (16%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   +   RP  L E  G  +  S L+VF     AR   + +++  GPPG GKTT    +
Sbjct: 33  ELPWVEKYRPVKLNEIVGNEDTVSRLEVF-----AREGNVPNIIIAGPPGTGKTTSILCL 87

Query: 75  AR------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIHRLSII 120
           AR            EL  +       V  K    A     L      ++ +DE   ++  
Sbjct: 88  ARALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDG 147

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            ++ L   ME +                   +RF    A      +  P+Q R  +    
Sbjct: 148 AQQALRRTMEIYSKT----------------TRF--ALACNASDKIIEPIQSRCAVLRYT 189

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
              +++ L  ++    +   +  TD+    I   ++G  R A   L+
Sbjct: 190 KLTDMQILARLLS-VIEKEKVQYTDDGLEAIIFTAQGDMRQALNNLQ 235


>gi|78066597|ref|YP_369366.1| DNA polymerase III subunits gamma and tau [Burkholderia sp. 383]
 gi|77967342|gb|ABB08722.1| DNA-directed DNA polymerase [Burkholderia sp. 383]
          Length = 791

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 52/274 (18%), Positives = 99/274 (36%), Gaps = 39/274 (14%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+      GQ      L   ++  +     L H  LF G  G+GKTTL+++ A+ L   
Sbjct: 11  RPKDFASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAMEDFQL 134
              TS P     G   A     E R V +++        +  ++ ++E  +Y  ++    
Sbjct: 66  TGVTSQP----CGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             M+ E             ++++        I ATT    +   +  R  +   L     
Sbjct: 122 VYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPA 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
             + + ++R      +    +A   +A  ++G+ R A  L  +   ++     ++     
Sbjct: 181 GHIVSHLERILGEEQITFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTESAVS-G 239

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGP 279
              AL +  +         +R L  +A   GGGP
Sbjct: 240 MLGALDQTYM---------VRLLDALA--AGGGP 262


>gi|253745639|gb|EET01440.1| Replication factor C, sub 2 [Giardia intestinalis ATCC 50581]
          Length = 351

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 46/240 (19%), Positives = 75/240 (31%), Gaps = 36/240 (15%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE----- 77
           RP  L+    Q  A    K  IE+       + H+L  GP G GKTTL   +  E     
Sbjct: 10  RPLALDRIVHQDHAVRAAKRCIESG-----NMPHMLLYGPAGTGKTTLVHAMMHEFFGPR 64

Query: 78  -LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
                    +         +   + ++    +        ++    + LYP   DFQ+ +
Sbjct: 65  FWRARVNEFNASTDRGIKIVRERIKSIARTVIA-------VAPEDVKALYP-CPDFQVIV 116

Query: 137 MVGEGPSARSVKINLSRF--------TLIAATTRVGLLTNPLQD---RFGIPIRLNFYEI 185
           +       R  +  L R                    +  P+     RF          I
Sbjct: 117 LDEADALTRESQAALRRIIEDYSETTRFCILCNYPSQIIAPIVSRCARFAFSPLPQTLII 176

Query: 186 EDLKTIV------QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           + L  I        R A      +  +A  E+A+ S+G  R A  LL+    F +    +
Sbjct: 177 DRLTAICYAEMHQLRNANEQLSLLASDALSEVAILSQGDMRAAITLLQTTVQFCQSMGEE 236


>gi|70944893|ref|XP_742328.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56521244|emb|CAH79373.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
          Length = 438

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 85/222 (38%), Gaps = 30/222 (13%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGV-----NFRSTSGPVIAKAGDLAALLTNL-EDRDVL 109
           +++  GPPG GK++L  V+  +           +     I +  D + +   L + R +L
Sbjct: 37  NLILCGPPGSGKSSLINVIKNKTHNLFITLFHLNNFNTEIRRIYDQSIINYKLSKRRMIL 96

Query: 110 FIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
            I +I+RL+   +E L   ++     L+                         + +L   
Sbjct: 97  CIKDINRLNKPQQEHLLLVLKKGYFYLLAT------------------CLYNPMNILNAS 138

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           L  R  + + L+ Y+  +L  I++R      + + D A   I   S G  R+A  ++   
Sbjct: 139 LSSRC-LYLYLSPYDKIELALIIKRIINKLNIEIEDNALNVIISHSSGDARVAINII--- 194

Query: 230 RDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMI 271
            DFA + H +    +  +        +K G ++ +   +  +
Sbjct: 195 -DFA-IQHMRLEETKEKERLEKEKQENKDGIEKKNDTMIKQV 234


>gi|56807590|ref|ZP_00365500.1| COG2812: DNA polymerase III, gamma/tau subunits [Streptococcus
           pyogenes M49 591]
          Length = 334

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 56/304 (18%), Positives = 99/304 (32%), Gaps = 48/304 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     R +T +E  GQ    + LK  +E+ K         LF GP G GKT+ A++ A+
Sbjct: 4   ALYRKYRSQTFDEMVGQSVISTTLKQAVESGKISHAY----LFSGPRGTGKTSAAKIFAK 59

Query: 77  ELGVNFR---------------------------STSGPVIAKAGDLAALLTNLEDR--- 106
            +    +                           + S   + +  D+    T    R   
Sbjct: 60  AMNCPNQVDGEPCNQCDICRDITNGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSRATY 119

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDFQ--LDLMVGEGPSARSVKINLSRFTLIAATTRVG 164
            V  IDE+H LS      L   +E+    +  ++      +     LSR           
Sbjct: 120 KVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKQ 179

Query: 165 LLTNPLQDRFGIPIRLN--FYEIEDLKTIVQRGAKLTGLA-VTDEAACEIAMRSRGTPRI 221
                +++     +      YE++ L  I +R       A    + A  ++  ++ T  I
Sbjct: 180 ---KAIREHLAWVLDKEGIAYEVDALNLIARRAEGGMRDALSILDQALSLSPDNQVTIAI 236

Query: 222 AGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDL------RYLTMIARNF 275
           A  +   +   A   + + +++E A  AL  L         +         YL  +    
Sbjct: 237 AEEITGSISILALGDYVRYVSQEQATQALAALETIYDSGKSMSRFATDLLTYLRDLLVVK 296

Query: 276 GGGP 279
            GG 
Sbjct: 297 AGGD 300


>gi|313892534|ref|ZP_07826121.1| DNA polymerase III, subunit gamma and tau [Dialister
           microaerophilus UPII 345-E]
 gi|313118931|gb|EFR42136.1| DNA polymerase III, subunit gamma and tau [Dialister
           microaerophilus UPII 345-E]
          Length = 205

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 54/166 (32%), Gaps = 36/166 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV-- 80
           RPRT  E  GQ      L      A  + +     LF GP G GKT++A+++A+ +    
Sbjct: 11  RPRTFSEVVGQKHISVPL----CNALIQNKVAHAYLFSGPRGTGKTSMAKILAKAVNCLN 66

Query: 81  ----------------------NFRSTSGPVIAKAGDLAAL------LTNLEDRDVLFID 112
                                 +             ++ AL      L     + V  ID
Sbjct: 67  PENSNPCNNCPNCNEINQGNSLDVYEIDAASNRGIEEIRALKESVCSLPATCRKKVYIID 126

Query: 113 EIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTL 156
           E+H L+      L   +E+    +  ++      +     LSR   
Sbjct: 127 EVHMLTKEAFNALLKTLEEPPSYIMFILATTEPEKIPLTILSRCQR 172


>gi|306831039|ref|ZP_07464201.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|304427062|gb|EFM30172.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
          Length = 559

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 45/255 (17%), Positives = 88/255 (34%), Gaps = 21/255 (8%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     R +T +E  GQ    + LK  + + K         LF GP G GKT+ A++ A+
Sbjct: 4   ALYRKYRSQTFDEMVGQTVISTTLKQAVSSGKISHAY----LFSGPRGTGKTSAAKIFAK 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +    +    P      D+   +TN    DV+ ID      +  +  I ++  Y     
Sbjct: 60  AMNCPNQVNGEPCNHC--DICRDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRA 117

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT +  +   +  R         
Sbjct: 118 TYKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQ-RFEFKA 176

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            ++  ++  +        ++  ++A   IA  + G  R A  +L +        +     
Sbjct: 177 IKLAAIREHLANILDKEEISYEEDALTLIARCAEGGMRDALSILDQALSLTPDNYVSLAI 236

Query: 243 REIADAALLRLAIDK 257
            E    ++   A+D 
Sbjct: 237 AEEITGSISMTALDD 251


>gi|145630854|ref|ZP_01786631.1| DNA polymerase III subunits gamma and tau [Haemophilus influenzae
           R3021]
 gi|144983514|gb|EDJ90982.1| DNA polymerase III subunits gamma and tau [Haemophilus influenzae
           R3021]
          Length = 688

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 51/282 (18%), Positives = 88/282 (31%), Gaps = 65/282 (23%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T  +  GQ    + L     A   +   L H  LF G  G+GKT++A++ A+ L   
Sbjct: 11  RPKTFADVVGQEHIITAL-----ANGLKDNRLHHAYLFSGTRGVGKTSIARLFAKGLNCV 65

Query: 82  F------------------------RSTSGPVIAKAGDLAALLTNLEDRDVL------FI 111
                                             K  D   LL N++ + V+       I
Sbjct: 66  HGVTATPCGECENCKAIEQGNFIDLIEIDAASRTKVEDTRELLDNVQYKPVVGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSRHSFNALLKTLEE------------------PPEYVKFLLATTDPQKLPVTIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L   +   +   +        +   + A  ++A  ++G+ R +  L     D
Sbjct: 168 SRC-LQFHLKALDETQISQHLAHILTQENIPFEEPALVKLAKAAQGSIRDSLSL----TD 222

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIAR 273
            A     + +T  +    L  L       D   +  L  + +
Sbjct: 223 QAIAMGDRQVTNSVVSNMLGLLD------DNYSVDILYALHQ 258


>gi|134046379|ref|YP_001097864.1| replication factor C large subunit [Methanococcus maripaludis C5]
 gi|166977384|sp|A4FZL6|RFCL_METM5 RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|132664004|gb|ABO35650.1| replication factor C large subunit [Methanococcus maripaludis C5]
          Length = 484

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 50/259 (19%), Positives = 97/259 (37%), Gaps = 26/259 (10%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +  +   RP++L +  G  +    L  +IE +    +    +L  GPPG GKTTLA  +A
Sbjct: 2   EEWVEKYRPKSLNDVAGHNKTKQALINWIE-SFVNGQKQKPILLAGPPGSGKTTLAHAIA 60

Query: 76  RELGVNFRSTSGP------VIAKAGDLAALLTNL-EDRDVLFIDEIHRLSIIVEEILYPA 128
           ++   +    +        VIA+    AA   +L   R ++ +DE+  LS   +      
Sbjct: 61  KDYAFDVIELNASDKRNKDVIAQVVGTAATSKSLTGKRTLIVLDEVDGLSGNDDRG---G 117

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + +    L   E P             ++ A          L++   +    + +    +
Sbjct: 118 VAEIIKVLKTAENP------------VILTANDVYKPALMTLRNNVNLINVGSVHTN-SI 164

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD--FAEVAHAKTITREIA 246
             ++++ A   G  + ++    IA  S G  R A   L+ +      EV  AK +    +
Sbjct: 165 PPVLRKIALKEGFEIDEKVIKTIASHSGGDLRAAINDLQSLATGGSLEVEDAKELPDRDS 224

Query: 247 DAALLRLAIDKMGFDQLDL 265
           + ++       M     D+
Sbjct: 225 EKSIFDAMRIIMKTTHYDI 243


>gi|114613993|ref|XP_001149740.1| PREDICTED: similar to replication factor C, 40-kDa subunit isoform
           2 [Pan troglodytes]
          Length = 378

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 77/227 (33%), Gaps = 38/227 (16%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   +   RP  L E  G  +  S L+VF     AR   + +++  GPPG GKTT    +
Sbjct: 35  ELPWVEKYRPVKLNEIVGNEDTVSRLEVF-----AREGNVPNIIIAGPPGTGKTTSILCL 89

Query: 75  AR------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIHRLSII 120
           AR            EL  +       V  K    A     L      ++ +DE   ++  
Sbjct: 90  ARALLGPALKDAMLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDG 149

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            ++ L   ME +                   +RF    A      +  P+Q R  +    
Sbjct: 150 AQQALRRTMEIYSKT----------------TRF--ALACNASDKIIEPIQSRCAVLRYT 191

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
              + + L   +    +   +  TD+    I   ++G  R A   L+
Sbjct: 192 KLTDAQILTR-LMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQ 237


>gi|126338206|ref|XP_001370165.1| PREDICTED: similar to replication factor C, 37-kDa subunit
           [Monodelphis domestica]
          Length = 366

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 74/234 (31%), Gaps = 45/234 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+ ++E   Q E  + LK  +E A      L ++LF GPPG GKT+     AR
Sbjct: 40  PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGAD-----LPNLLFYGPPGTGKTSTILAAAR 94

Query: 77  -------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD--------VLFIDEIH 115
                        EL  +       +  K    A L  +    D        ++ +DE  
Sbjct: 95  ELYGPELFRQRVLELNASDERGIQVIREKVKTFAQLTVSGSRSDGKPCPPFKIVILDEAD 154

Query: 116 RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
            ++   +  L   ME                     +RF        V  +  PL  R  
Sbjct: 155 SMTSAAQAALRRTMEKESKT----------------TRF--CLICNYVSRIIEPLTSRCS 196

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
              R      +     +   ++   + + +E    +   S G  R A   L+  
Sbjct: 197 -KFRFKPLSDKIQHQRLLDISEKENVKINNEGIAYLVKVSEGDLRKAITFLQSA 249


>gi|320155732|ref|YP_004188111.1| DNA polymerase III subunits gamma and tau [Vibrio vulnificus
           MO6-24/O]
 gi|319931044|gb|ADV85908.1| DNA polymerase III subunits gamma and tau [Vibrio vulnificus
           MO6-24/O]
          Length = 730

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 55/266 (20%), Positives = 85/266 (31%), Gaps = 59/266 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPR  +E  GQ    + L+  +E        L H  LF G  G+GKT++ ++ A+ L   
Sbjct: 11  RPRQFKEVVGQGHVLTALENALE-----HNRLHHAYLFSGTRGVGKTSIGRLFAKALNCE 65

Query: 82  FRSTSGP------------------------VIAKAGDLAALLTNLEDRD------VLFI 111
              TS P                           K  D   LL N++ +       V  I
Sbjct: 66  TGITSAPCGQCDTCREIEEGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSRHSFNALLKTLEE------------------PPEYVKFLLATTDPQKLPVTIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L    ++ +   +       G+     A   IA  + G+ R A  L     D
Sbjct: 168 SRC-LQFHLKPITVDAIHQQLDFILAKEGVTAQARALGMIAHAADGSMRDALSL----TD 222

Query: 232 FAEVAHAKTITREIADAALLRLAIDK 257
            A       I  ++    L  +  D+
Sbjct: 223 QAIALGNGQIETDLVSHMLGTIDTDQ 248


>gi|217969820|ref|YP_002355054.1| DNA polymerase III subunits gamma/tau [Thauera sp. MZ1T]
 gi|217507147|gb|ACK54158.1| DNA polymerase III, subunits gamma and tau [Thauera sp. MZ1T]
          Length = 716

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 49/305 (16%), Positives = 86/305 (28%), Gaps = 66/305 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN- 81
           RP++     GQ          +  A A        LF G  G+GKTT+++++A+ L    
Sbjct: 11  RPKSFGTLVGQEHVV----RALTHALATGRLHHAWLFTGTRGVGKTTISRILAKALNCET 66

Query: 82  -----------------------FRSTSGPVIAKAGDLAALLTNL------EDRDVLFID 112
                                  +            ++AALL             V  ID
Sbjct: 67  GITAEPCGICDACRAIDADRFPDYVEMDAASNRGVEEMAALLDKAVYAPVQGRFKVYMID 126

Query: 113 EIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           E+H L+      +   +E+    +  ++      +     LSR                 
Sbjct: 127 EVHMLTGHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPQG----- 181

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
                            +   + R  +   +A    A   +A  + G+ R A  LL    
Sbjct: 182 ----------------HIVDHLTRILQAEEVAFEPGALRHLAKAASGSMRDALSLL---- 221

Query: 231 DFAEVAHAKTITREIADAALLRLAIDKM-----GFDQLDLRYLTMIARNFGGGPVGIETI 285
           D A    A  +  E     L  +  D +          D+  L  +A       +  +  
Sbjct: 222 DQAIAHGAGRVEEEQVSHMLGTVGDDHLYAVLDALAAGDVPALLAVADGMEARSLSFDAA 281

Query: 286 SAGLS 290
              L+
Sbjct: 282 LQALA 286


>gi|88657800|ref|YP_506849.1| DNA polymerase III, subunits gamma and tau [Ehrlichia chaffeensis
           str. Arkansas]
 gi|88599257|gb|ABD44726.1| DNA polymerase III, subunits gamma and tau [Ehrlichia chaffeensis
           str. Arkansas]
          Length = 505

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 47/239 (19%), Positives = 86/239 (35%), Gaps = 25/239 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP   ++  GQ          +  A    +  + +L  G  G+GKTT A++++  L    
Sbjct: 21  RPSNFKDLIGQEVLV----RVLHNAFHLNKIPESILLTGISGVGKTTAARIISMCLNC-- 74

Query: 83  RSTSGPVIAKAGDLAAL--LTNLEDRDVLFIDEIHRLS-----IIVEEILYPAMEDFQLD 135
              SGP             + N    DV+ ID     S     +I+E   Y  +      
Sbjct: 75  --ISGPTSDPCNTCQNCISIKNFNHPDVIEIDAASNTSIEDVKVILENSRYMPISSKFKV 132

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             + ++        I ATT V  +   +  R            +
Sbjct: 133 YIIDEVHMLSNSAFNALLKVLEEPAPYVKFILATTEVKKIPVTIISRCQ-RFDFQRISTD 191

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
            L   ++  AK   ++  +E+   IA  + G+ R A  LL +   ++    ++ IT+E+
Sbjct: 192 KLVDHLKVVAKKENVSFDEESIKLIAYNADGSIRNALSLLEQAAIYSNKILSENITKEM 250


>gi|68171405|ref|ZP_00544797.1| DNA-directed DNA polymerase [Ehrlichia chaffeensis str. Sapulpa]
 gi|67999172|gb|EAM85830.1| DNA-directed DNA polymerase [Ehrlichia chaffeensis str. Sapulpa]
          Length = 492

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 47/239 (19%), Positives = 86/239 (35%), Gaps = 25/239 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP   ++  GQ          +  A    +  + +L  G  G+GKTT A++++  L    
Sbjct: 8   RPSNFKDLIGQEVLV----RVLHNAFHLNKIPESILLTGISGVGKTTAARIISMCLNC-- 61

Query: 83  RSTSGPVIAKAGDLAAL--LTNLEDRDVLFIDEIHRLS-----IIVEEILYPAMEDFQLD 135
              SGP             + N    DV+ ID     S     +I+E   Y  +      
Sbjct: 62  --ISGPTSDPCNTCQNCISIKNFNHPDVIEIDAASNTSIEDVKVILENSRYMPISSKFKV 119

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             + ++        I ATT V  +   +  R            +
Sbjct: 120 YIIDEVHMLSNSAFNALLKVLEEPAPYVKFILATTEVKKIPVTIISRCQ-RFDFQRISTD 178

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
            L   ++  AK   ++  +E+   IA  + G+ R A  LL +   ++    ++ IT+E+
Sbjct: 179 KLVDHLKVVAKKENVSFDEESIKLIAYNADGSIRNALSLLEQAAIYSNKILSENITKEM 237


>gi|198431165|ref|XP_002120445.1| PREDICTED: similar to peroxin1 [Ciona intestinalis]
          Length = 1270

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 61/240 (25%), Positives = 90/240 (37%), Gaps = 27/240 (11%)

Query: 24   PRTLEEFTGQVEACSNL-KVFIEAAKARA-------EALDHVLFVGPPGLGKTTLAQVVA 75
            P T  +  G  +    L +  I   K +        EA   VL  GPPG GKT +A VVA
Sbjct: 827  PLTWADVGGLEKVKEKLTEQLIWPIKYKHLFDGCGLEANSGVLLFGPPGCGKTLIAGVVA 886

Query: 76   RELGVNFRSTSGP-VIAK-AGDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYP 127
             E  +NF S  GP V++K  G   A + +L  R       VLF DE   L+         
Sbjct: 887  NECDLNFISIKGPEVLSKYIGASEAAVRDLFSRAKAAAPCVLFFDEFDSLAPPR-----G 941

Query: 128  AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
                   D +V +  +       L   T++AAT+R  LL + L    R    +     + 
Sbjct: 942  HDSTGVTDRVVNQLLTHLDGVEPLVGVTVLAATSRPDLLDSALLRPGRLDNLLYCPLPDE 1001

Query: 186  EDLKTIVQRGAKLTGLAVTD----EAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
            E+ + I++  ++   L   D       CE    +     +    L  V D  + A     
Sbjct: 1002 EEREDILRSLSRNLPLHDVDLTTVAKHCENFSGADLKALLYNAQLEAVHDSIDAAKVNED 1061


>gi|156937486|ref|YP_001435282.1| ATPase AAA [Ignicoccus hospitalis KIN4/I]
 gi|156566470|gb|ABU81875.1| AAA family ATPase, CDC48 subfamily [Ignicoccus hospitalis KIN4/I]
          Length = 734

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 69/340 (20%), Positives = 114/340 (33%), Gaps = 56/340 (16%)

Query: 24  PR-TLEEFTGQVEACSNLKVFIEA--------AKARAEALDHVLFVGPPGLGKTTLAQVV 74
           P+ T E+  G       L+  IE          +   E    VL  GPPG GKT LA+ +
Sbjct: 180 PKVTWEDIGGLENVVRKLRELIELPMKYPEIFKRLGIEPPKGVLLFGPPGTGKTMLAKAL 239

Query: 75  ARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILY 126
           A E+  +F   +GP I           L  +          ++FIDEI  ++   EE+  
Sbjct: 240 ANEIDAHFIPINGPEIMSKYYGESEQRLREIFEEARKNAPSIIFIDEIDAIAPKREEVTG 299

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
              +     L+               R  +I AT R   +   L+   R  + I +   +
Sbjct: 300 EVEKRVVAQLLT-----LMDGLQERGRVVVIGATNRPNAIDPALRRPGRLEVEIEIPLPD 354

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            +    I+Q   +   LA   +      M    T      L+R    +A       + R 
Sbjct: 355 KKGRLEILQIHTRNMPLAEDVDLEKLAEMTHGYTGADLAALVRSAAFYA-------LRRY 407

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISA-----------GLSEPR 293
           + +  L +  I     D++ +     I       P G+  I             GL E +
Sbjct: 408 LPEIDLDKGEIPPDLLDRMKVTMEDFINAYKDIVPSGLREIYIETPEVHWEDVGGLKEAK 467

Query: 294 DAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
             + + +E  +                P A++ LGI+ P 
Sbjct: 468 QQLREAVEWPLKY--------------PEAFRRLGIEPPK 493



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 70/196 (35%), Gaps = 24/196 (12%)

Query: 28  EEFTGQVEACSNLKVFIE-------AAKARA-EALDHVLFVGPPGLGKTTLAQVVARELG 79
           E+  G  EA   L+  +E       A +    E    +L  GPPG GKT LA+  A E  
Sbjct: 458 EDVGGLKEAKQQLREAVEWPLKYPEAFRRLGIEPPKGILLFGPPGTGKTLLAKAAATESQ 517

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLED--RDVLFIDEIHRLSIIV-EEILYPAME 130
            NF +  GP I           +  +          ++F DEI  ++ +   +      E
Sbjct: 518 ANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPTIVFFDEIDSIAPVRGMDTSTQVTE 577

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
                L+       R     L    +IA+T R  ++   L    RF   I +   + E  
Sbjct: 578 RIVSQLLTEMDGIER-----LGNVVVIASTNRPDMVDPALLRPGRFDKLIYVPPPDKEAR 632

Query: 189 KTIVQRGAKLTGLAVT 204
             I++   +   L + 
Sbjct: 633 FQILKIHTRNMPLDMD 648


>gi|260365299|ref|ZP_05777856.1| putative DNA polymerase III, gamma/tau subunit [Vibrio
           parahaemolyticus K5030]
 gi|308115467|gb|EFO53007.1| putative DNA polymerase III, gamma/tau subunit [Vibrio
           parahaemolyticus K5030]
          Length = 639

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 51/251 (20%), Positives = 89/251 (35%), Gaps = 29/251 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP   ++  GQ    + L    E A A+       LF G  G+GKT++ ++ A+ L    
Sbjct: 11  RPNKFDQVVGQKHVLTAL----ENALAQNRLHHAYLFSGTRGVGKTSIGRLFAKGLNCET 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILY------PAMEDFQL 134
             T+ P     G+ A      E R  D+L ID   R  +     L       PA   F++
Sbjct: 67  GITATP----CGECATCREIDEGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRFKV 122

Query: 135 DLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            L+               ++++        + ATT    L   +  R  +   L    ++
Sbjct: 123 YLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRC-LQFHLKPISVD 181

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           D+   +        ++   +A   I+  + G+ R A  L     D A       +  +I 
Sbjct: 182 DIHQQLDYILGQEQVSAESKALGMISHAADGSMRDALSL----TDQAIALGNGAVQTDIV 237

Query: 247 DAALLRLAIDK 257
              L  +  D+
Sbjct: 238 SHMLGTIDTDQ 248


>gi|238494006|ref|XP_002378239.1| DNA replication factor C subunit  Rfc4, putative [Aspergillus
           flavus NRRL3357]
 gi|220694889|gb|EED51232.1| DNA replication factor C subunit Rfc4, putative [Aspergillus flavus
           NRRL3357]
          Length = 295

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 78/227 (34%), Gaps = 38/227 (16%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   +   RP  L++  G  E    LK+      A+   + HV+  G PG+GKTT    +
Sbjct: 27  ELPWVEKYRPVFLDDVVGNTETIERLKII-----AKDGNMPHVIISGMPGIGKTTSILCL 81

Query: 75  AR------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIHRLSII 120
           AR            EL  +       V  +    A     L      ++ +DE   ++  
Sbjct: 82  ARQLLGDAYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRHKIVILDEADSMTPG 141

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            ++ L   ME +                   +RF    A  +   +  P+Q R  I    
Sbjct: 142 AQQALRRTMEIYSST----------------TRFAF--ACNQSNKIIEPIQSRCAILRYA 183

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
              + + +K  +++      +  T++    +   + G  R A   L+
Sbjct: 184 RLTDGQVVKR-LKQVCDAEKVEHTEDGIAALVFSAEGDMRQAINNLQ 229


>gi|148266337|ref|YP_001233043.1| DNA polymerase III, subunits gamma and tau [Geobacter
           uraniireducens Rf4]
 gi|146399837|gb|ABQ28470.1| DNA polymerase III, tau subunit [Geobacter uraniireducens Rf4]
          Length = 579

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 53/173 (30%), Gaps = 36/173 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN- 81
           RP+T  +  GQ      L+  I+  +         LF G  G+GKT+ A+++A+ L    
Sbjct: 11  RPQTFSDLIGQEHVSRTLQNAIDTGRVAHA----FLFTGARGVGKTSSARILAKALNCEQ 66

Query: 82  -----------------------FRSTSGPVIAKAGDLAALLTNLE------DRDVLFID 112
                                       G       D+  L  N++         +  ID
Sbjct: 67  GLTTEPCNTCPSCTEITDGNSVDVFEIDGASNTGVDDIRELRDNVKYLPSRSRYKIFIID 126

Query: 113 EIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
           E+H L+      L   +E+    +  +       +     LSR          
Sbjct: 127 EVHMLTNNAFNALLKTLEEPPAHVKFIFATTEPHKVPITILSRCQRFDFKRIA 179


>gi|326423917|ref|NP_760873.2| DNA polymerase III subunits gamma and tau [Vibrio vulnificus CMCP6]
 gi|319999294|gb|AAO10400.2| DNA polymerase III, subunits gamma and tau [Vibrio vulnificus
           CMCP6]
          Length = 734

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 55/266 (20%), Positives = 85/266 (31%), Gaps = 59/266 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPR  +E  GQ    + L+  +E        L H  LF G  G+GKT++ ++ A+ L   
Sbjct: 11  RPRQFKEVVGQGHVLTALENALE-----HNRLHHAYLFSGTRGVGKTSIGRLFAKALNCE 65

Query: 82  FRSTSGP------------------------VIAKAGDLAALLTNLEDRD------VLFI 111
              TS P                           K  D   LL N++ +       V  I
Sbjct: 66  TGITSAPCGQCDTCREIEEGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSRHSFNALLKTLEE------------------PPEYVKFLLATTDPQKLPVTIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L    ++ +   +       G+     A   IA  + G+ R A  L     D
Sbjct: 168 SRC-LQFHLKPITVDAIHQQLDFILAKEGVTAQARALGMIAHAADGSMRDALSL----TD 222

Query: 232 FAEVAHAKTITREIADAALLRLAIDK 257
            A       I  ++    L  +  D+
Sbjct: 223 QAIALGNGQIETDLVSHMLGTIDTDQ 248


>gi|220911471|ref|YP_002486780.1| DNA polymerase III subunits gamma/tau [Arthrobacter
           chlorophenolicus A6]
 gi|219858349|gb|ACL38691.1| DNA polymerase III, subunits gamma and tau [Arthrobacter
           chlorophenolicus A6]
          Length = 1202

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 45/237 (18%), Positives = 72/237 (30%), Gaps = 23/237 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP +  +  GQ      L   +   +         LF GP G GKTT A+++AR
Sbjct: 6   ALYRRYRPDSFADVIGQEHVTGPLMTALRKNRVNHAY----LFSGPRGCGKTTSARILAR 61

Query: 77  ELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL-----YPAM 129
            L      T  P  V     +LA         DV+ ID      +     L     Y  +
Sbjct: 62  CLNCAEGPTDTPCGVCPSCVELA--RGGSGSLDVIEIDAASHGGVDDARDLRERATYAPV 119

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            D     ++ E             + V+        I ATT    +   ++ R       
Sbjct: 120 RDRYKIFIIDEAHMVTSAGFNALLKIVEEPPEHIKFIFATTEPDKVIGTIRSR-THHYPF 178

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                E L   ++       + V       +     G+ R +  +L ++   A    
Sbjct: 179 RLVPPEPLMAYLELLCNQENVPVAPGVLSLVIRAGGGSVRDSLSVLDQLMAGAGPNG 235


>gi|148653256|ref|YP_001280349.1| DNA polymerase III subunits gamma and tau [Psychrobacter sp.
           PRwf-1]
 gi|148572340|gb|ABQ94399.1| DNA polymerase III, gamma subunit / DNA polymerase III, tau subunit
           [Psychrobacter sp. PRwf-1]
          Length = 751

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 57/303 (18%), Positives = 91/303 (30%), Gaps = 68/303 (22%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLA 71
            Q        RP+   E  GQ      L   I+        L H  LF G  G+GKTT+A
Sbjct: 3   QQYQVLARKYRPKNFHELVGQSHVSKALINAID-----HNRLHHAYLFTGTRGVGKTTIA 57

Query: 72  QVVARELGVNFRSTS------------------------GPVIAKAGDLAALLTNL---- 103
           +++++ L      TS                             K  D   L+ N+    
Sbjct: 58  RILSKCLNCETGVTSTPCGVCSSCVAIDQGRFIDLIEIDAASRTKVEDTRELIDNVPYAP 117

Query: 104 --EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATT 161
                 V  IDE+H LS      L   +E+                    +    + ATT
Sbjct: 118 TQGRYKVYLIDEVHMLSTHSFNALLKTLEE------------------PPAHVKFLLATT 159

Query: 162 RVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRI 221
               L   +  R  +   L     + L   +        +  T  A  ++A  ++G+ R 
Sbjct: 160 DPQKLPITIISRC-LQFVLRPLPQQALSDHIANLLTQENIDFTQPALWQLANAAKGSVRD 218

Query: 222 AGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVG 281
           A  L     D A       +T E  +  L          D  D   ++++   + G    
Sbjct: 219 ALSL----TDQAIAFGQGRLTDETVNDMLGL-------IDSAD--LISLLLDIYQGNAPA 265

Query: 282 IET 284
           +  
Sbjct: 266 LSA 268


>gi|331087183|ref|ZP_08336253.1| hypothetical protein HMPREF0987_02556 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330408869|gb|EGG88330.1| hypothetical protein HMPREF0987_02556 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 521

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 50/234 (21%), Positives = 85/234 (36%), Gaps = 29/234 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     RP   E+  GQ      LK  I+A     E + H  LF G  G GKT++A++ A
Sbjct: 5   ALYRKFRPGGFEDVKGQDHIVQTLKNQIKA-----ERIGHAYLFCGTRGTGKTSVAKIFA 59

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRD---VLFID-----EIHRLSIIVEEILYP 127
           + +         PV        A+   + +     V+ ID      +  +  I EE+ Y 
Sbjct: 60  KAVNCEH-----PVDGSPCGQCAMCQKIAEGTSMNVIEIDAASNNGVDNIREIREEVAYR 114

Query: 128 AMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
             E      ++ E             ++++        I ATT V  +   +  R     
Sbjct: 115 PTEGKYKVYIIDEVHMLSIGAFNALLKTLEEPPEYVIFILATTEVHKIPITILSRCQRYD 174

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
                 I+ +   + +  +   + V ++A   IA  + G+ R A  LL +   F
Sbjct: 175 FKRI-TIDTIAARMSQLMETEHVEVEEKAIRYIAKAADGSMRDALSLLDQCIAF 227


>gi|326931171|ref|XP_003211707.1| PREDICTED: replication factor C subunit 2-like [Meleagris
           gallopavo]
          Length = 360

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 79/227 (34%), Gaps = 38/227 (16%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   +   RP  L E  G  +  S L+VF     A+   + +++  GPPG GKTT    +
Sbjct: 41  ELPWVEKYRPLKLCEVVGNEDTVSRLEVF-----AKEGNVPNIIIAGPPGTGKTTSILCL 95

Query: 75  AR------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIHRLSII 120
           AR            EL  +       V  K    A     L      ++ +DE   ++  
Sbjct: 96  ARALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDG 155

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            ++ L   ME +                   +RF    A      +  P+Q R  +    
Sbjct: 156 AQQALRRTMEIYSKT----------------TRF--ALACNASDKIIEPIQSRCAVLRYT 197

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
              + + L  +++   +   +  TD+    I   ++G  R A   L+
Sbjct: 198 KLTDSQILARLLK-IVEKEDVPYTDDGLEAIIFTAQGDMRQALNNLQ 243


>gi|315497912|ref|YP_004086716.1| DNA polymerase iii, subunits gamma and tau [Asticcacaulis
           excentricus CB 48]
 gi|315415924|gb|ADU12565.1| DNA polymerase III, subunits gamma and tau [Asticcacaulis
           excentricus CB 48]
          Length = 603

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 52/236 (22%), Positives = 85/236 (36%), Gaps = 21/236 (8%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RPRT E+  GQ      L      A A        +  G  G+GKTT A+++AR L
Sbjct: 45  ARKYRPRTFEDLIGQEAMVRTLS----NAFATGRIAHAFMLTGVRGVGKTTTARLLARAL 100

Query: 79  GVNFRSTSGPV--IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL-----YPAMED 131
                +  GP   ++  G     +      DVL +D   R  +     L     Y  +E 
Sbjct: 101 NYESDTMKGPSVDLSTFGYHCQAIIEGRHIDVLELDAASRTGVDSMRELLESVRYAPVEA 160

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT +  +   +  R      L  
Sbjct: 161 RYKVYVIDEVHMLSTGAFNALLKTLEEPPPHAKFIFATTEIRKVPVTILSRCQ-RFDLRR 219

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
            E E L   +++  +L G  +  +A   IA  + G+ R +  LL +    AE   +
Sbjct: 220 VEPETLTPHLEKICRLEGAQIEPDALALIARAAEGSVRDSLSLLDQALVQAEEGQS 275


>gi|224417692|ref|ZP_03655698.1| DNA polymerase III subunits gamma and tau [Helicobacter canadensis
           MIT 98-5491]
 gi|253827041|ref|ZP_04869926.1| DNA polymerase III subunits gamma and tau [Helicobacter canadensis
           MIT 98-5491]
 gi|253510447|gb|EES89106.1| DNA polymerase III subunits gamma and tau [Helicobacter canadensis
           MIT 98-5491]
          Length = 586

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 73/229 (31%), Gaps = 51/229 (22%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTL 70
           +   +A     RP   +E  GQ      L + +E+ +     L H  LF G  G GKT+ 
Sbjct: 1   MEHNEALALKYRPMDFDELVGQESVSRTLSLALESKR-----LSHAYLFSGLRGSGKTSS 55

Query: 71  AQVVARELGVN--------------------------FRSTSGPVIAKAGDLAALLT--- 101
           A++ AR L                                  G    K  D+  L+    
Sbjct: 56  ARIFARALQCEKGPKAKPCGVCANCIAANPHKMRHIDIIELDGASSRKIDDIRDLIEQTK 115

Query: 102 ---NLEDRDVLFIDEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLS---- 152
              N+    +  IDE+H L+      L   +E+    +  ++      +     LS    
Sbjct: 116 YHPNMGRYKIFIIDEVHMLTKEAFNALLKTLEEPPEYVKFILATTDPLKLPATILSRTQH 175

Query: 153 -RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
            RF  I+       L N L            Y+ E L  +++ G+    
Sbjct: 176 FRFKRISEKNIFEHLKNILHKENIT------YQDEALNMLIRSGSGSLR 218


>gi|82539183|ref|XP_724000.1| replication factor C, 40 kDa subunit [Plasmodium yoelii yoelii str.
           17XNL]
 gi|23478491|gb|EAA15565.1| replication factor C, 40 kDa subunit [Plasmodium yoelii yoelii]
          Length = 330

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 47/218 (21%), Positives = 90/218 (41%), Gaps = 14/218 (6%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+ L++   Q  A S LK  I+      + + H++F GPPG GKT+    +A 
Sbjct: 5   PWVEKYRPKKLDDIVHQTNAISMLKEVIK-----TKNMPHLIFHGPPGTGKTSAINALAH 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAAL---LTNLEDRDVLFIDEIHRLSIIVEEILYPA--MED 131
           EL      +   +   A D   +      ++    + I + ++++    E L P   +  
Sbjct: 60  ELFGKENISERVLELNASDDRGINVVREKIKAYTRISISK-NKINSENNEPLPPWKLVVL 118

Query: 132 FQLDLMVGEGPSA--RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
            + D+M  +  SA  R ++I  +    I     +  +++P+  R     R     I   K
Sbjct: 119 DEADMMTEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIYSRCS-CYRFQGIPINIKK 177

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             +    K   + ++D A  +I   ++G  R A  +L+
Sbjct: 178 EKLLYICKNENIDISDNALSKIIETTQGDLRRAVSVLQ 215


>gi|298707690|emb|CBJ26007.1| Pim1 homolog, ATP-dependent protease [Ectocarpus siliculosus]
          Length = 1075

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 52/256 (20%), Positives = 90/256 (35%), Gaps = 34/256 (13%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI   K R      +L FVGPPG+GKT++   +A+ L   F   S
Sbjct: 514 EDHYGLDDIKERILEFIAVGKLRGGVHGRILCFVGPPGVGKTSIGHSIAKALDREFYRFS 573

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  V+ IDEI +L+   +        
Sbjct: 574 VGGLRDVAEIKGHRRTYVGSMPGKLIQCLKVTGTNNPVVLIDEIDKLARAHDGDPASALL 633

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P+     LD  +        V ++LS    I     +  +  PL+DR  + IRL+ 
Sbjct: 634 EVLDPSQNSAFLDNYL-------DVPVDLSNCLFICTANVLDTIPGPLKDRMEV-IRLSG 685

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH-AKTI 241
           Y++ +   I ++                              L R     A V + +K +
Sbjct: 686 YDLPEKVAISEQYLIPKARKDHGMDKDNRLGHVEIEREAIETLARWYAREAGVRNLSKLV 745

Query: 242 TREIADAALLRLAIDK 257
            +     AL  +  D+
Sbjct: 746 DKIHRKLALEMVLEDQ 761


>gi|253314984|ref|ZP_04838197.1| recombination factor protein RarA [Staphylococcus aureus subsp.
          aureus str. CF-Marseille]
          Length = 58

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 16 DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
          +   S +RP+ ++E   Q        +       +   L  ++F GPPG+GKT++A+
Sbjct: 4  EPLASRMRPKNIDEIISQQHLVGPKGIIRRMVDTK--KLTSMIFYGPPGIGKTSIAK 58


>gi|83855097|ref|ZP_00948627.1| DNA polymerase III subunits gamma and tau [Sulfitobacter sp.
           NAS-14.1]
 gi|83842940|gb|EAP82107.1| DNA polymerase III subunits gamma and tau [Sulfitobacter sp.
           NAS-14.1]
          Length = 582

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 63/301 (20%), Positives = 106/301 (35%), Gaps = 33/301 (10%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T  +  GQ      LK   EA +         +  G  G GKTT A+++A+ +
Sbjct: 11  ARKYRPETFADLVGQDAMVRTLKNAFEADRIAQA----FIMTGIRGTGKTTTARIIAKGM 66

Query: 79  GV-NFRSTSGPVIAKAGDLAALLTNLEDR--DVLFID-----EIHRLSIIVEEILYPAME 130
                    GP     G     +  +E R  DV+ +D      +  +  I++ + Y A  
Sbjct: 67  NCIGPDGNGGPTTEPCGVCEHCVAIMEGRHVDVMEMDAASNTGVGNIREIIDSVHYRAAS 126

Query: 131 DFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
                 ++ E             ++++        I ATT +  +   +  R      L 
Sbjct: 127 ARYKVYIIDEVHMLSTGAFNALLKTLEEPPEHVKFIFATTEIRKVPVTVLSRCQ-RFDLR 185

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
             E E +  ++++ A   G  + D+A   I   + G+ R A  LL    D A    A   
Sbjct: 186 RIEPEVMIALMRKIATAEGAEIADDALALITRAAEGSARDATSLL----DQAISHGAGET 241

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV-GIETISAGLSEPRDAIEDLI 300
           T     A L      ++  D  D     MI R    G +  +    +  ++P   + DL 
Sbjct: 242 TAVQVRAMLGLADRGRV-LDLFD-----MILRGDAAGALDELGNQYSDGADPMAVLRDLA 295

Query: 301 E 301
           E
Sbjct: 296 E 296


>gi|83032953|ref|XP_729265.1| replication factor C subunit 4 [Plasmodium yoelii yoelii str.
           17XNL]
 gi|23486553|gb|EAA20830.1| replication factor C subunit 4 [Plasmodium yoelii yoelii]
          Length = 358

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 50/263 (19%), Positives = 91/263 (34%), Gaps = 43/263 (16%)

Query: 2   MDREGLLSRNVSQE-DADISLLRPRTLEEFTGQVEACSNLKVFIE---------AAKARA 51
           M+ +   +R + +  D  I   RP  LE+  G     + LK  I          A K   
Sbjct: 1   MEEDSFKNRLLKRNIDIWIEKYRPEYLEDVVGNPFVINTLKSIIVSGNMPNLLLAVKIIF 60

Query: 52  EALDHVLFVGPPGLGKTTLAQVVAREL------------GVNFRSTSGPVIAKAGDLAAL 99
             L ++   G PG GKTT    +A E+              +       +  +    A  
Sbjct: 61  SLLMNLFCCGAPGTGKTTSILCLASEMLGSQAKKAVLELNASDDRGINVIRDRIKSFAKE 120

Query: 100 LTNL--EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLI 157
           + +L      ++ +DE+  ++   ++ L   ME +                 + +RF   
Sbjct: 121 VISLPPGRHKIIILDEVDSMTTAAQQSLRRIMELYS----------------DTTRF--A 162

Query: 158 AATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRG 217
            A  +   + + LQ R  I       + + LK I++   +   +  TD+    I   + G
Sbjct: 163 LACNQSEKIIDALQSRCAIIRYFKLTDDQVLKRILK-ICEYENIKYTDDGLETITFIADG 221

Query: 218 TPRIAGRLLRRVRDFAEVAHAKT 240
             R A   L+      EV + + 
Sbjct: 222 DLRKAVNCLQSTYAGLEVINKEN 244


>gi|297587504|ref|ZP_06946148.1| DNA polymerase III, gamma/tau subunit DnaX [Finegoldia magna ATCC
           53516]
 gi|297574193|gb|EFH92913.1| DNA polymerase III, gamma/tau subunit DnaX [Finegoldia magna ATCC
           53516]
          Length = 538

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 82/227 (36%), Gaps = 27/227 (11%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVAREL 78
              RP T ++  GQ      LK  IE      + + H  +F G  G GKT+ A++ AR +
Sbjct: 6   RKYRPDTFDKVYGQKHITDILKNQIE-----TKNISHAYIFSGSRGTGKTSCAKIFARAI 60

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHR-----LSIIVEEILYPAMED 131
                    P           L++LE+    ++ +D         +  + ++++YP  + 
Sbjct: 61  NCLDLQDGNP----CNKCENCLSSLEESTLDIVEMDAASNRRIDDIRELRDKVIYPPTKL 116

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             + ++        I ATT +  +   +  R         
Sbjct: 117 KYKVYIIDEAHMITNEGFNALLKIMEEPPKHLVFILATTEIDKIPQTILSRCQ-RYEFKM 175

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
              +D+   ++         + D+A   IA ++ G  R A  +L +V
Sbjct: 176 INAKDISDNIKYILNDLNRKMDDDAIKLIANKADGAMRDALSILDQV 222


>gi|37680595|ref|NP_935204.1| DNA polymerase III subunits gamma and tau [Vibrio vulnificus YJ016]
 gi|37199343|dbj|BAC95175.1| DNA polymerase III, subunits gamma and tau [Vibrio vulnificus
           YJ016]
          Length = 730

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 55/266 (20%), Positives = 85/266 (31%), Gaps = 59/266 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPR  +E  GQ    + L+  +E        L H  LF G  G+GKT++ ++ A+ L   
Sbjct: 11  RPRQFKEVVGQGHVLTALENALE-----HNRLHHAYLFSGTRGVGKTSIGRLFAKALNCE 65

Query: 82  FRSTSGP------------------------VIAKAGDLAALLTNLEDRD------VLFI 111
              TS P                           K  D   LL N++ +       V  I
Sbjct: 66  KGITSAPCGQCDTCREIEEGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSRHSFNALLKTLEE------------------PPEYVKFLLATTDPQKLPVTIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L    ++ +   +       G+     A   IA  + G+ R A  L     D
Sbjct: 168 SRC-LQFHLKPITVDAIHQQLDFILAKEGVTAQARALGMIAHAADGSMRDALSL----TD 222

Query: 232 FAEVAHAKTITREIADAALLRLAIDK 257
            A       I  ++    L  +  D+
Sbjct: 223 QAIALGNGQIETDLVSHMLGTIDTDQ 248


>gi|307170254|gb|EFN62614.1| Replication factor C subunit 5 [Camponotus floridanus]
          Length = 329

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 64/197 (32%), Gaps = 29/197 (14%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           +         +   RP++L+E          +  FI+        L H+L  GPPG GKT
Sbjct: 5   TAEQRANLPWVEKYRPKSLDELISHETIIRTINKFID-----ENQLPHLLLYGPPGTGKT 59

Query: 69  TLAQVVAR------ELGVNFRSTSGPVIAKAGDLA-ALLTNLEDRD-------VLFIDEI 114
           +     AR      +        +       G +   +L+             ++ +DE 
Sbjct: 60  STILACARKLYTPTQFNSMVLELNASDDRGIGIVRGQILSFASTGTMYKSAFKLIILDEA 119

Query: 115 HRLSIIVEEILYPAMEDFQ--LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
             ++I  +  L   +E +   +   +     ++ +    SR T             PL  
Sbjct: 120 DAMTIDAQNALRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTRFRFL--------PLAA 171

Query: 173 RFGIPIRLNFYEIEDLK 189
              IP      E E+LK
Sbjct: 172 EQIIPRLNYVIEAENLK 188


>gi|242024266|ref|XP_002432549.1| Replication factor C subunit, putative [Pediculus humanus corporis]
 gi|212518009|gb|EEB19811.1| Replication factor C subunit, putative [Pediculus humanus corporis]
          Length = 360

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 45/238 (18%), Positives = 79/238 (33%), Gaps = 44/238 (18%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+T+++   QVE  S L+  ++ A      L ++LF GPPG GKT+     AR
Sbjct: 36  PWVEKYRPKTVDDIVEQVEVVSVLRQTLKGAD-----LPNLLFYGPPGTGKTSTILAAAR 90

Query: 77  ------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD--------VLFIDEIHR 116
                       EL  +       +  K    A L  +    D        ++ +DE   
Sbjct: 91  QLFGDMFKERILELNASDDRGIQVIRDKVKTFAQLSASSTRPDGQPCPPFKIVLLDEADS 150

Query: 117 LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
           ++   +  L   ME +                   +RF        V  +  P+  R   
Sbjct: 151 MTSAAQAALRRTMELYTKT----------------TRF--CLVCNYVSRIIPPITSRCS- 191

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
             R        +   + + +K   + + D+    +   + G  R A   L+      E
Sbjct: 192 KFRFKPLGENKIFERLSKISKAEKVNINDDTLMTLVKCTGGDLRRAITSLQSCARIKE 249


>gi|146304983|ref|YP_001192299.1| AAA family ATPase [Metallosphaera sedula DSM 5348]
 gi|145703233|gb|ABP96375.1| AAA family ATPase, CDC48 subfamily [Metallosphaera sedula DSM 5348]
          Length = 760

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 50/202 (24%), Positives = 79/202 (39%), Gaps = 24/202 (11%)

Query: 11  NVSQEDADISLLRPR-TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVG 61
            + +E    + + PR T E+     E    L+  IE      E   H        VL  G
Sbjct: 166 TIKEEPVREAQVYPRVTWEDIGDLDEVKEKLREMIELPMKHPELFQHLGIEPPKGVLLYG 225

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDE 113
           PPG+GKT LA+ +A E+G  F + +GP I           L  +  + +     ++FIDE
Sbjct: 226 PPGVGKTLLARALANEIGAYFVTINGPEIMSKFYGESEQRLREIFDDADKNAPSIIFIDE 285

Query: 114 IHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD- 172
           I  ++   EE+     +     L+               R  +I AT R   +   L+  
Sbjct: 286 IDAIAPKREEVTGEVEKRVVSQLLT-----LMDGIKGRGRIVVIGATNRPDAVDQALRRP 340

Query: 173 -RFGIPIRLNFYEIEDLKTIVQ 193
            RF   I +   + +  K I+Q
Sbjct: 341 GRFDREIEIRPPDTKARKEILQ 362



 Score = 60.5 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 48/189 (25%), Positives = 71/189 (37%), Gaps = 23/189 (12%)

Query: 24  PR-TLEEFTGQVEACSNLKVFIE--------AAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           PR    E  G       L+  IE          KA       VL  GPPG GKT LA+ V
Sbjct: 456 PRVRWSEIGGLENVKQQLREAIEWPMRFPEVFNKAGIRPPKGVLLFGPPGTGKTMLAKAV 515

Query: 75  ARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILY 126
           A E G NF +  GP +           +  +          V+F DEI  ++ +      
Sbjct: 516 ATESGANFIAVRGPEVLSKWVGESEKAIREIFKRARQTAPTVVFFDEIDSIAPMR----G 571

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
              +    + MV +  S     + LS+  +IAAT R  ++   L    RF   I +   +
Sbjct: 572 MGHDSGVTERMVNQLLSEMDGIVPLSKVVVIAATNRPDIIDPALLRPGRFDRLIYVPPPD 631

Query: 185 IEDLKTIVQ 193
            +    I++
Sbjct: 632 KQARLEILK 640


>gi|115973629|ref|XP_001195031.1| PREDICTED: similar to replication factor C subunit RFC5
           [Strongylocentrotus purpuratus]
          Length = 292

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 56/157 (35%), Gaps = 30/157 (19%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75
           +   RP +L++     E  + ++ FI+      + L H+LF GPPG GKT+    VA   
Sbjct: 4   VEKYRPNSLDDLISHTEIINTIQKFIK-----QDRLPHLLFYGPPGTGKTSTILAVAKQL 58

Query: 76  ---RELGVNFRSTSGPVIAKAGDLAA-LLTNLEDRDVL-------FIDEIHRLSIIVEEI 124
              +E        +       G +   +L     R +         +DE   ++   +  
Sbjct: 59  YAPKEFNSMVLELNASDDRGIGIVRGSILNFASTRTIFKSGFKLVILDEADAMTNDAQNA 118

Query: 125 LY----------PAMEDFQLDLMV-GEGPSARSVKIN 150
           L              ED +  L+   +G   R + I 
Sbjct: 119 LRRENGPLMFSVDMTEDGKKALITLAKGDMRRVINIL 155


>gi|255944955|ref|XP_002563245.1| Pc20g07200 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211587980|emb|CAP86049.1| Pc20g07200 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 388

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 49/253 (19%), Positives = 78/253 (30%), Gaps = 59/253 (23%)

Query: 10  RNVSQEDADISLL--RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
                   D S L  RP++L++   Q    + L+  ++A+      L H+LF GPPG GK
Sbjct: 22  PKAGDNKEDSSRLQPRPKSLDDVAAQDHTTNVLQRTLQAS-----NLPHMLFYGPPGTGK 76

Query: 68  TTLAQVVAR-------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD------- 107
           T+    +A+             EL  +     G V  K  + A     L           
Sbjct: 77  TSTILALAKSLFGPALYRSRILELNASDERGIGIVRDKVKNFA--RAQLSQPTGLDAAYR 134

Query: 108 ---------VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIA 158
                    ++ +DE   ++   +  L   ME +                   SR T   
Sbjct: 135 AQYPCPPFKIIILDEADSMTQDAQSALRRTMETY-------------------SRITRFC 175

Query: 159 A-TTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRG 217
                V  +  PL  R     R    +       +   A+  GL + D     +     G
Sbjct: 176 LVCNYVTRIIEPLASRCS-KFRFKMLDNSAAGERIGNIAEQEGLQLEDGVIDTLIRCGDG 234

Query: 218 TPRIAGRLLRRVR 230
             R A   L+   
Sbjct: 235 DLRRAITYLQSAA 247


>gi|45382983|ref|NP_990861.1| replication factor C subunit 2 [Gallus gallus]
 gi|1703053|sp|P53033|RFC2_CHICK RecName: Full=Replication factor C subunit 2; AltName:
           Full=Activator 1 40 kDa subunit; Short=A1 40 kDa
           subunit; AltName: Full=Activator 1 subunit 2; AltName:
           Full=Replication factor C 40 kDa subunit; Short=RF-C 40
           kDa subunit; Short=RFC40
 gi|527669|gb|AAA20552.1| replication factor C/activator 1 subunit [Gallus gallus]
          Length = 359

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 79/227 (34%), Gaps = 38/227 (16%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   +   RP  L E  G  +  S L+VF     A+   + +++  GPPG GKTT    +
Sbjct: 40  ELPWVEKYRPLKLCEVVGNEDTVSRLEVF-----AKEGNVPNIIIAGPPGTGKTTSILCL 94

Query: 75  AR------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIHRLSII 120
           AR            EL  +       V  K    A     L      ++ +DE   ++  
Sbjct: 95  ARALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDG 154

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            ++ L   ME +                   +RF    A      +  P+Q R  +    
Sbjct: 155 AQQALRRTMEIYSKT----------------TRF--ALACNASDKIIEPIQSRCAVLRYT 196

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
              + + L  +++   +   +  TD+    I   ++G  R A   L+
Sbjct: 197 KLTDSQILARLLK-IVEKEDVPYTDDGLEAIIFTAQGDMRQALNNLQ 242


>gi|298253202|ref|ZP_06976994.1| DNA polymerase III, gamma/tau subunits [Gardnerella vaginalis 5-1]
 gi|297532597|gb|EFH71483.1| DNA polymerase III, gamma/tau subunits [Gardnerella vaginalis 5-1]
          Length = 796

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 54/281 (19%), Positives = 92/281 (32%), Gaps = 26/281 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T +   GQ +    L   ++  K         LF GP G GKT+ A+++AR
Sbjct: 4   ALYRRYRPDTFDGVIGQDQVTIPLSRALDQGKITHAY----LFSGPRGCGKTSSARILAR 59

Query: 77  ELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PA 128
            +      TS P        DLA         DV+ ID      +     L       PA
Sbjct: 60  CINCEKGPTSHPCGECQSCKDLA--TGGAGSIDVVEIDAASHNGVDDARELRERAGFAPA 117

Query: 129 MEDFQLDLMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR---FGIP 177
            + +++ ++         G     + V+        I ATT    +   ++ R   +   
Sbjct: 118 RDRYKIFILDEAHMVTQQGFNALLKIVEEPPEHVMFIFATTEPDKVIGTIRSRTHHYPFR 177

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
           +         L+ I ++   L    V        A   R T  +  +L+    D +    
Sbjct: 178 LVPPEVMSPYLEDICKKEGILPQPGVLRLVMRAGAGSMRDTLSVLDQLMVGAVDGSISLD 237

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
           +          +L+   ID +  +        ++ R   GG
Sbjct: 238 SAVALLGFTPNSLISEFIDNL-INHDGASIYDVVRRVIVGG 277


>gi|153217534|ref|ZP_01951215.1| DNA polymerase III tau subunit [Vibrio cholerae 1587]
 gi|124113525|gb|EAY32345.1| DNA polymerase III tau subunit [Vibrio cholerae 1587]
          Length = 559

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 52/265 (19%), Positives = 82/265 (30%), Gaps = 57/265 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP    E  GQ    + L    E A A+       LF G  G+GKTT+ ++ A+ L    
Sbjct: 11  RPTRFSEVVGQSHVLTAL----ENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCET 66

Query: 83  ------------------------RSTSGPVIAKAGDLAALLTNLEDRD------VLFID 112
                                            K  D   LL N++ +       V  ID
Sbjct: 67  GITATPCGQCATCQEIDQGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRFKVYLID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS      L   +E+                         + ATT    L   +  
Sbjct: 127 EVHMLSRHSFNALLKTLEE------------------PPEYVKFLLATTDPQKLPVTILS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R  +   L    +E+++  + +      ++   +A   +A  + G+ R A  L     D 
Sbjct: 169 RC-LQFHLKPISVENIQQQLDKVLHAEQISSDSKALNLLAHAADGSMRDALSL----TDQ 223

Query: 233 AEVAHAKTITREIADAALLRLAIDK 257
           A       +  +I    L  L  D 
Sbjct: 224 AIALGNGVVKSDIVAHMLGTLDTDH 248


>gi|50555415|ref|XP_505116.1| YALI0F07337p [Yarrowia lipolytica]
 gi|49650986|emb|CAG77923.1| YALI0F07337p [Yarrowia lipolytica]
          Length = 333

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/234 (17%), Positives = 76/234 (32%), Gaps = 22/234 (9%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   +   RP  L++  G  E    LK+      A+   + ++L  G PG+GKTT    +
Sbjct: 17  ELPWVEKYRPMYLDDVVGHTETVERLKIM-----AKDGNIPNLLISGLPGIGKTTSVHCL 71

Query: 75  ARE------LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           AR               +         +   + N   + V      H++ I+ E     A
Sbjct: 72  ARTLLGPQLYKDAVLELNASDDRGIEVVRGKIKNFAQKKVTMPPGKHKIIILDEADSMTA 131

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
                      +    R++++         A  +   +   +Q R  I +R      E +
Sbjct: 132 ---------GAQNALKRTMELYSDTTRFAFACNQSNKIIEAIQSRCAI-LRFGRLSNEQV 181

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR-RVRDFAEVAHAKTI 241
              +    +   +  +D+    +   + G  R A   L+  V  F  V  +   
Sbjct: 182 LERLLHIVEAENVQCSDDGLSALIFSAEGDMRQAINNLQGTVSGFGFVNSSNVW 235


>gi|22124967|ref|NP_668390.1| DNA polymerase III subunits gamma and tau [Yersinia pestis KIM 10]
 gi|45440656|ref|NP_992195.1| DNA polymerase III subunits gamma and tau [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51595342|ref|YP_069533.1| DNA polymerase III subunits gamma and tau [Yersinia
           pseudotuberculosis IP 32953]
 gi|108808607|ref|YP_652523.1| DNA polymerase III subunits gamma and tau [Yersinia pestis Antiqua]
 gi|108811131|ref|YP_646898.1| DNA polymerase III subunits gamma and tau [Yersinia pestis
           Nepal516]
 gi|145600018|ref|YP_001164094.1| DNA polymerase III subunits gamma and tau [Yersinia pestis
           Pestoides F]
 gi|149365029|ref|ZP_01887064.1| DNA polymerase III subunit Tau (contains DNA polymerase III subunit
           Gamma) [Yersinia pestis CA88-4125]
 gi|162421503|ref|YP_001607270.1| DNA polymerase III subunits gamma and tau [Yersinia pestis Angola]
 gi|165927644|ref|ZP_02223476.1| DNA polymerase III, subunits gamma and tau [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165935942|ref|ZP_02224512.1| DNA polymerase III, subunits gamma and tau [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166011016|ref|ZP_02231914.1| DNA polymerase III, subunits gamma and tau [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166213081|ref|ZP_02239116.1| DNA polymerase III, subunits gamma and tau [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167399280|ref|ZP_02304804.1| DNA polymerase III, subunits gamma and tau [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167422767|ref|ZP_02314520.1| DNA polymerase III, subunits gamma and tau [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167423551|ref|ZP_02315304.1| DNA polymerase III, subunits gamma and tau [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|186894361|ref|YP_001871473.1| DNA polymerase III subunits gamma and tau [Yersinia
           pseudotuberculosis PB1/+]
 gi|218930155|ref|YP_002348030.1| DNA polymerase III subunits gamma and tau [Yersinia pestis CO92]
 gi|229838721|ref|ZP_04458880.1| DNA polymerase III/DNA elongation factor III, tau and gamma
           subunits [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229899289|ref|ZP_04514432.1| DNA polymerase III/DNA elongation factor III, tau and gamma
           subunits [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229901363|ref|ZP_04516485.1| DNA polymerase III/DNA elongation factor III, tau and gamma
           subunits [Yersinia pestis Nepal516]
 gi|270489548|ref|ZP_06206622.1| DNA polymerase III, subunit gamma and tau [Yersinia pestis KIM D27]
 gi|294504861|ref|YP_003568923.1| DNA polymerase III subunits gamma and tau [Yersinia pestis Z176003]
 gi|21957809|gb|AAM84641.1|AE013709_10 DNA polymerase III, tau and gamma subunits [Yersinia pestis KIM 10]
 gi|45435514|gb|AAS61072.1| DNA polymerase III subunit Tau (Contains DNA polymerase III subunit
           Gamma) [Yersinia pestis biovar Microtus str. 91001]
 gi|51588624|emb|CAH20232.1| DNA polymerase III, tau and gamma subunits; DNA elongation factor
           III [Yersinia pseudotuberculosis IP 32953]
 gi|108774779|gb|ABG17298.1| DNA polymerase III, gamma subunit / DNA polymerase III, tau subunit
           [Yersinia pestis Nepal516]
 gi|108780520|gb|ABG14578.1| DNA polymerase III, gamma subunit / DNA polymerase III, tau subunit
           [Yersinia pestis Antiqua]
 gi|115348766|emb|CAL21718.1| DNA polymerase III subunit Tau (contains DNA polymerase III subunit
           Gamma) [Yersinia pestis CO92]
 gi|145211714|gb|ABP41121.1| DNA polymerase III, gamma subunit / DNA polymerase III, tau subunit
           [Yersinia pestis Pestoides F]
 gi|149291442|gb|EDM41516.1| DNA polymerase III subunit Tau (contains DNA polymerase III subunit
           Gamma) [Yersinia pestis CA88-4125]
 gi|162354318|gb|ABX88266.1| DNA polymerase III, subunits gamma and tau [Yersinia pestis Angola]
 gi|165916087|gb|EDR34694.1| DNA polymerase III, subunits gamma and tau [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165920398|gb|EDR37675.1| DNA polymerase III, subunits gamma and tau [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165990016|gb|EDR42317.1| DNA polymerase III, subunits gamma and tau [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166205868|gb|EDR50348.1| DNA polymerase III, subunits gamma and tau [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166958358|gb|EDR55379.1| DNA polymerase III, subunits gamma and tau [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167051784|gb|EDR63192.1| DNA polymerase III, subunits gamma and tau [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167057721|gb|EDR67467.1| DNA polymerase III, subunits gamma and tau [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|186697387|gb|ACC88016.1| DNA polymerase III, subunits gamma and tau [Yersinia
           pseudotuberculosis PB1/+]
 gi|229681292|gb|EEO77386.1| DNA polymerase III/DNA elongation factor III, tau and gamma
           subunits [Yersinia pestis Nepal516]
 gi|229687691|gb|EEO79764.1| DNA polymerase III/DNA elongation factor III, tau and gamma
           subunits [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229695087|gb|EEO85134.1| DNA polymerase III/DNA elongation factor III, tau and gamma
           subunits [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|262362925|gb|ACY59646.1| DNA polymerase III subunits gamma and tau [Yersinia pestis D106004]
 gi|262366846|gb|ACY63403.1| DNA polymerase III subunits gamma and tau [Yersinia pestis D182038]
 gi|270338052|gb|EFA48829.1| DNA polymerase III, subunit gamma and tau [Yersinia pestis KIM D27]
 gi|294355320|gb|ADE65661.1| DNA polymerase III subunits gamma and tau [Yersinia pestis Z176003]
 gi|320016308|gb|ADV99879.1| Holliday junction DNA helicase RuvB [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 658

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 76/242 (31%), Gaps = 53/242 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+ L    
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCET 66

Query: 83  ------------------------RSTSGPVIAKAGDLAALLTNLE------DRDVLFID 112
                                            K  D   LL N++         V  ID
Sbjct: 67  GITATPCGTCANCQEIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS      L   +E+                    +    + ATT    L   +  
Sbjct: 127 EVHMLSRHSFNALLKTLEE------------------PPAHVKFLLATTDPQKLPVTILS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R  +   L   ++E ++  +++      +     A   +A  + G+ R A  L  +    
Sbjct: 169 RC-LQFHLKALDVEQIRAQLEKVLLAEQITSDARALQLLARAADGSMRDALSLTDQAVSM 227

Query: 233 AE 234
            +
Sbjct: 228 GQ 229


>gi|169343396|ref|ZP_02864400.1| DNA polymerase III, gamma and tau subunits [Clostridium perfringens
           C str. JGS1495]
 gi|169298482|gb|EDS80568.1| DNA polymerase III, gamma and tau subunits [Clostridium perfringens
           C str. JGS1495]
          Length = 547

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 46/250 (18%), Positives = 86/250 (34%), Gaps = 25/250 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + LK  I             LF G  G GKT+ A+V+A+ L    
Sbjct: 11  RPQTFNDVVGQEHITTTLKNQI----INERTAHAYLFCGTRGTGKTSTAKVMAKALNC-L 65

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
               G    +      +   L   D+  +D      +  +  I++++ YP  E      +
Sbjct: 66  DLKDGEPCNQCEMCKKINEGLAI-DITELDAASNNGVDNIRDIIDDVQYPPQEARFKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT    L   +  R            +D+
Sbjct: 125 MDEVHMLSIGAVNAFLKTLEEPPKNVVFILATTDPQKLPITILSRCQ-RFDFKRISKKDI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              +++     G+   D++   +A  S G  R +  +L    D A       +  +   +
Sbjct: 184 TGRLRKIVTEQGIFCDDKSLDLVARVSDGAMRDSLSIL----DQAISIGDGKVDYDELVS 239

Query: 249 ALLRLAIDKM 258
            L  +  D +
Sbjct: 240 MLGLVTNDNL 249


>gi|84394297|ref|ZP_00993021.1| DNA polymerase III subunits gamma and tau [Vibrio splendidus 12B01]
 gi|84375065|gb|EAP91988.1| DNA polymerase III subunits gamma and tau [Vibrio splendidus 12B01]
          Length = 632

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 54/265 (20%), Positives = 90/265 (33%), Gaps = 35/265 (13%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP   +E  GQ    + L    E A ++       LF G  G+GKTT+ ++ A+ L    
Sbjct: 11  RPTKFKEVVGQAHVLTAL----ENALSQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCET 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILY------PAMEDFQL 134
             T+ P     G+ A      E R  D+L ID   R  +     L       PA   F++
Sbjct: 67  GITATP----CGECATCKEIDEGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRFKV 122

Query: 135 DLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            L+               ++++        + ATT    L   +  R  +   L    ++
Sbjct: 123 YLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRC-LQFHLKPISVD 181

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           ++   +    +   +     A   IA  + G+ R A  L     D A       +  +  
Sbjct: 182 NIHEQLDHILEQENVTSESRALGMIAHAADGSMRDALSL----TDQAIALGNGNVVTDTV 237

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMI 271
              L  L  D+       +  L  I
Sbjct: 238 AHMLGTLDTDQA------IHLLEAI 256


>gi|153949412|ref|YP_001402019.1| DNA polymerase III subunits gamma and tau [Yersinia
           pseudotuberculosis IP 31758]
 gi|152960907|gb|ABS48368.1| DNA polymerase III, subunits gamma and tau [Yersinia
           pseudotuberculosis IP 31758]
          Length = 658

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 76/242 (31%), Gaps = 53/242 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+ L    
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCET 66

Query: 83  ------------------------RSTSGPVIAKAGDLAALLTNLE------DRDVLFID 112
                                            K  D   LL N++         V  ID
Sbjct: 67  GITATPCGTCANCQEIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS      L   +E+                    +    + ATT    L   +  
Sbjct: 127 EVHMLSRHSFNALLKTLEE------------------PPAHVKFLLATTDPQKLPVTILS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R  +   L   ++E ++  +++      +     A   +A  + G+ R A  L  +    
Sbjct: 169 RC-LQFHLKALDVEQIRAQLEKVLLAEQITSDARALQLLARAADGSMRDALSLTDQAVSM 227

Query: 233 AE 234
            +
Sbjct: 228 GQ 229


>gi|58269654|ref|XP_571983.1| Activator 1 40 kDa subunit [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|134114003|ref|XP_774249.1| hypothetical protein CNBG2300 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50256884|gb|EAL19602.1| hypothetical protein CNBG2300 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57228219|gb|AAW44676.1| Activator 1 40 kDa subunit, putative [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 347

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 53/286 (18%), Positives = 88/286 (30%), Gaps = 42/286 (14%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   +   RP  L++  G  +    LKV  E        + H++  G PG+GKTT    +
Sbjct: 25  EMPWVEKYRPVLLDDIVGNSDTVDRLKVIAE-----DGNVPHIIISGMPGIGKTTSIHCL 79

Query: 75  AR------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIHRLSII 120
           A             EL  +       V  K    A     L      ++ +DE   ++  
Sbjct: 80  AHALLGEAYKEGVLELNASDERGIDVVRNKIKSFAQRKVTLPPGRHKIIILDEADSMTAG 139

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            ++ L   ME +                 N +RF    A      +  P+Q R  I    
Sbjct: 140 AQQALRRTMEIYS----------------NTTRF--ALACNMSNKIIEPIQSRCAILRYS 181

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD-FAEVAHAK 239
              + E LK  ++    +  +   DE    +   + G  R A   L+     F  V    
Sbjct: 182 KLNDAEVLKR-LKEICDMESIKHNDEGLAALIFTAEGDMRQAINNLQSTWSGFGFVNQDN 240

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETI 285
                     ++   + K   D    +    +AR       G   +
Sbjct: 241 VFKICDQPHPIVIRQMIK---DCQHGKIDEALARVNALWDQGYSAV 283


>gi|315221642|ref|ZP_07863561.1| DNA polymerase III, subunit gamma and tau [Streptococcus anginosus
           F0211]
 gi|315189293|gb|EFU22989.1| DNA polymerase III, subunit gamma and tau [Streptococcus anginosus
           F0211]
          Length = 554

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 47/271 (17%), Positives = 85/271 (31%), Gaps = 55/271 (20%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     R +T  +  GQ    + L+  +E      + + H  LF GP G GKT++A++ A
Sbjct: 4   ALYRKYRSQTFGQLVGQEVVATTLRQAVE-----QDKISHAYLFSGPRGTGKTSVAKIFA 58

Query: 76  RELGVNFR------------------------STSGPVIAKAGDLAALLTN------LED 105
           + +    +                                   ++  +         L  
Sbjct: 59  KAMNCPNQKDGEPCNDCYICQAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLAK 118

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
             V  IDE+H LS      L   +E+                         I ATT +  
Sbjct: 119 HKVYIIDEVHMLSTGAFNALLKTLEEPT------------------ENVVFILATTELHK 160

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           +   +  R       +    + ++ I +   +   +   +EA   IA R+ G  R A  +
Sbjct: 161 IPATILSRVQRFEFKSIKTKDIVEHI-EWILQQENIDFENEAVQIIARRAEGGMRDALSI 219

Query: 226 LRRVRDFAEVAHAKTITREIADAALLRLAID 256
           L +     +     T   E    ++   A+D
Sbjct: 220 LDQALSLTQDNQLTTAISEEITGSISLGALD 250


>gi|195111460|ref|XP_002000296.1| GI10150 [Drosophila mojavensis]
 gi|193916890|gb|EDW15757.1| GI10150 [Drosophila mojavensis]
          Length = 354

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 58/318 (18%), Positives = 102/318 (32%), Gaps = 39/318 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RPR++E+   Q E  + L+  +E A      L ++L  GPPG GKT+     AR
Sbjct: 32  PWVEKYRPRSVEDVVEQSEVVAVLRKCVEGAD-----LPNMLLYGPPGTGKTSTILAAAR 86

Query: 77  ------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD--------VLFIDEIHR 116
                       EL  +       V  K  + A L  +    D        ++ +DE   
Sbjct: 87  QIFGDMYRDRILELNASDERGINVVRTKIKNFAQLTASNVRPDGRPCPPFKIIVLDEADS 146

Query: 117 LSIIVEEILYPAM--EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRF 174
           ++   +  L   M  E       +     +R +    SR +                   
Sbjct: 147 MTHAAQAALRRTMEKESRSTRFCLICNYVSRIIVPITSRCSKFRFKALGETQIIARLKHI 206

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR------ 228
            +   +N  + +  K+IV+        A+T   +C     S  T      LL        
Sbjct: 207 CMQENVNI-DPDAYKSIVKISGGDMRRAITTLQSCYRLKGSDHTIN-TDDLLEMSGIIPE 264

Query: 229 --VRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETIS 286
             + D+ EV  +     E  +  +  +        Q+  +++  I R           I 
Sbjct: 265 HYLEDYLEVCRSGK--YERLEHFVREIGYSAYSVGQMMEQFVEFIVRCGSLTDKQKAIIC 322

Query: 287 AGLSEPRDAIEDLIEPYM 304
             L E    ++D    Y+
Sbjct: 323 DKLGECCYRLQDGGSEYL 340


>gi|121587397|ref|ZP_01677167.1| DNA polymerase III, subunits gamma and tau [Vibrio cholerae
           2740-80]
 gi|121548400|gb|EAX58462.1| DNA polymerase III, subunits gamma and tau [Vibrio cholerae
           2740-80]
          Length = 336

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 52/265 (19%), Positives = 82/265 (30%), Gaps = 57/265 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP    E  GQ    + L    E A A+       LF G  G+GKTT+ ++ A+ L    
Sbjct: 11  RPTRFSEVVGQSHVLTAL----ENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCET 66

Query: 83  ------------------------RSTSGPVIAKAGDLAALLTNLEDRD------VLFID 112
                                            K  D   LL N++ +       V  ID
Sbjct: 67  GITATPCGQCATCQEIDQGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRFKVYLID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS      L   +E+                         + ATT    L   +  
Sbjct: 127 EVHMLSRHSFNALLKTLEE------------------PPEYVKFLLATTDPQKLPVTILS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R  +   L    +E+++  + +      ++   +A   +A  + G+ R A  L     D 
Sbjct: 169 RC-LQFHLKPISVENIQQQLDKVLHAEQISSDSKALNLLAHAADGSMRDALSL----TDQ 223

Query: 233 AEVAHAKTITREIADAALLRLAIDK 257
           A       +  +I    L  L  D 
Sbjct: 224 AIALGNGVVKSDIVAHMLGTLDADH 248


>gi|89897776|ref|YP_521263.1| hypothetical protein DSY5030 [Desulfitobacterium hafniense Y51]
 gi|89337224|dbj|BAE86819.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 623

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 74/337 (21%), Positives = 119/337 (35%), Gaps = 67/337 (19%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
             +LRP+ +EE  GQ      ++  +  AK       H++  GPPG+GKT+ A+V    +
Sbjct: 158 AEVLRPQAVEEIIGQEV---PMQFLL--AKLATPYPQHIIIYGPPGVGKTSAARVALEAV 212

Query: 79  GVNFRSTSG------------------------------PVIAKAG-DLAA--------- 98
             N  S                                 P+   A  DLA          
Sbjct: 213 KKNVNSPFAESAPFVEVDGTTLRWDPRDVTNPLLGSVHDPIYQGAKRDLAETGIPEPKLG 272

Query: 99  LLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG-EGPSARSVKINLSR---- 153
           L+++     +LFIDEI  +  ++   L   +ED ++        P+   V + + +    
Sbjct: 273 LVSDAHGG-ILFIDEIGEMDPVLLNKLLKVLEDKRVAFESAYYDPNDPQVPLYIKKLFEE 331

Query: 154 -----FTLIAATTRVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEA 207
                F LI ATTR     NP L+ R G  I  N  E  D++ IV + A+  G  + +  
Sbjct: 332 GAPADFVLIGATTRDPRELNPALRSRCG-EIYFNPLEPRDIQHIVSQAAQKLGANL-EAK 389

Query: 208 ACEIAMRSRGTPRIAGRLLRRVRDFAEVAH--------AKTITREIADAALLRLAIDKMG 259
             E+        R A  +L      +   H        A+ +   +  A L      K  
Sbjct: 390 VPEVISEYVFEGRKANTILTDAYGLSRYRHPEQEVLVKAEEVYEVLRSARLTPYISHKAA 449

Query: 260 FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAI 296
                 + L +    F G  + +E I     E +  I
Sbjct: 450 DRGETGKILGLGVHGFVGSVLELEAIVFPGREGKGTI 486


>gi|325663669|ref|ZP_08152073.1| hypothetical protein HMPREF0490_02814 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470162|gb|EGC73395.1| hypothetical protein HMPREF0490_02814 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 521

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 50/234 (21%), Positives = 85/234 (36%), Gaps = 29/234 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     RP   E+  GQ      LK  I+A     E + H  LF G  G GKT++A++ A
Sbjct: 5   ALYRKFRPGGFEDVKGQDHIVQTLKNQIKA-----ERIGHAYLFCGTRGTGKTSVAKIFA 59

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRD---VLFID-----EIHRLSIIVEEILYP 127
           + +         PV        A+   + +     V+ ID      +  +  I EE+ Y 
Sbjct: 60  KAVNCEH-----PVDGSPCGQCAMCQKIAEGTSMNVIEIDAASNNGVDNIREIREEVAYR 114

Query: 128 AMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
             E      ++ E             ++++        I ATT V  +   +  R     
Sbjct: 115 PTEGKYKVYIIDEVHMLSIGAFNALLKTLEEPPEYVIFILATTEVHKIPITILSRCQRYD 174

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
                 I+ +   + +  +   + V ++A   IA  + G+ R A  LL +   F
Sbjct: 175 FKRI-TIDTIAARMSQLMETEHVEVEEKAIRYIAKAADGSMRDALSLLDQCIAF 227


>gi|323488472|ref|ZP_08093718.1| DNA polymerase III subunit gamma/tau [Planococcus donghaensis
           MPA1U2]
 gi|323397864|gb|EGA90664.1| DNA polymerase III subunit gamma/tau [Planococcus donghaensis
           MPA1U2]
          Length = 577

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 43/241 (17%), Positives = 76/241 (31%), Gaps = 53/241 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN- 81
           RP++  E TGQ      L    + A    +     LF GP G GKT+ A++ A+ L    
Sbjct: 11  RPQSFSEMTGQTHVKQTL----QNALLYNKTTHAYLFSGPRGTGKTSAAKIFAKALNCEQ 66

Query: 82  -----------------------FRSTSGPVIAKAGDLAALLTNLE------DRDVLFID 112
                                           ++  ++  ++  +          +  ID
Sbjct: 67  APTAEPCNECTSCRSINEGSNTDVIEFDAASNSRVEEMREIIEKVRFSPANSRFKIYIID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS      L   +E+                         I ATT    L   +  
Sbjct: 127 EVHMLSNSAFNALLKTLEE------------------PPEHVVFILATTEPHKLPLTIIS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R       +  +++ +  +V+       +   ++    IA  + G  R A  LL +V  F
Sbjct: 169 RCQRFDFKSHTQVDIVSRMVE-VLTDAKIPYNEQVLKIIAQAAAGGMRDALSLLDQVVSF 227

Query: 233 A 233
           +
Sbjct: 228 S 228


>gi|260900002|ref|ZP_05908397.1| putative DNA polymerase III, gamma/tau subunit [Vibrio
           parahaemolyticus AQ4037]
 gi|308107292|gb|EFO44832.1| putative DNA polymerase III, gamma/tau subunit [Vibrio
           parahaemolyticus AQ4037]
          Length = 711

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 51/251 (20%), Positives = 89/251 (35%), Gaps = 29/251 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP   ++  GQ    + L    E A A+       LF G  G+GKT++ ++ A+ L    
Sbjct: 11  RPNKFDQVVGQKHVLTAL----ENALAQNRIHHAYLFSGTRGVGKTSIGRLFAKGLNCET 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILY------PAMEDFQL 134
             T+ P     G+ A      E R  D+L ID   R  +     L       PA   F++
Sbjct: 67  GITATP----CGECATCREIDEGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRFKV 122

Query: 135 DLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            L+               ++++        + ATT    L   +  R  +   L    ++
Sbjct: 123 YLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRC-LQFHLKPISVD 181

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           D+   +        ++   +A   I+  + G+ R A  L     D A       +  +I 
Sbjct: 182 DIHQQLDYILGQEQVSAESKALGMISHAADGSMRDALSL----TDQAIALGNGAVQTDIV 237

Query: 247 DAALLRLAIDK 257
              L  +  D+
Sbjct: 238 SHMLGTIDTDQ 248


>gi|254361787|ref|ZP_04977922.1| DNA-directed DNA polymerase III gamma and tau subunits [Mannheimia
           haemolytica PHL213]
 gi|153093322|gb|EDN74318.1| DNA-directed DNA polymerase III gamma and tau subunits [Mannheimia
           haemolytica PHL213]
          Length = 685

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 46/245 (18%), Positives = 78/245 (31%), Gaps = 55/245 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGV- 80
           RP+   E  GQ    S L+  +     R + L H  LF G  G+GKT++A++ A+ L   
Sbjct: 11  RPQRFSEVVGQQHVLSALENSL-----REDRLHHAYLFSGTRGVGKTSIARLFAKGLNCV 65

Query: 81  -----------------------NFRSTSGPVIAKAGDLAALLTNLEDRD------VLFI 111
                                  +          K  D   LL N++ +       V  I
Sbjct: 66  NGITAEPCGECANCKAIEEGHFIDLIEIDAASRTKVEDTRELLDNVQYKPTVGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSRHSFNALLKTLEE------------------PPEYVKFLLATTDPQKLPITIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L   E   +   ++       +     A  ++A  ++G+ R +  L  +   
Sbjct: 168 SRC-MQFHLRALEQSQIARHLEFILNAENIPFEPLALEKLAKAAQGSIRDSLSLTDQAIA 226

Query: 232 FAEVA 236
            +   
Sbjct: 227 MSNAN 231


>gi|110799164|ref|YP_694518.1| DNA polymerase III subunits gamma and tau [Clostridium perfringens
           ATCC 13124]
 gi|110673811|gb|ABG82798.1| DNA polymerase III, gamma and tau subunits [Clostridium perfringens
           ATCC 13124]
          Length = 547

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 46/250 (18%), Positives = 86/250 (34%), Gaps = 25/250 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + LK  I             LF G  G GKT+ A+V+A+ L    
Sbjct: 11  RPQTFNDVVGQEHITTTLKNQI----INERTAHAYLFCGTRGTGKTSTAKVMAKALNC-L 65

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
               G    +      +   L   D+  +D      +  +  I++++ YP  E      +
Sbjct: 66  DLKDGEPCNQCEMCKKINEGLAI-DITELDAASNNGVDNIRDIIDDVQYPPQEARFKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT    L   +  R            +D+
Sbjct: 125 MDEVHMLSIGAVNAFLKTLEEPPKNVVFILATTDPQKLPITILSRCQ-RFDFKRISRKDI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              +++     G+   D++   +A  S G  R +  +L    D A       +  +   +
Sbjct: 184 TGRLRKIVTEQGIFCDDKSLDLVARVSDGAMRDSLSIL----DQAISIGDGKVDYDELVS 239

Query: 249 ALLRLAIDKM 258
            L  +  D +
Sbjct: 240 MLGLVTNDNL 249


>gi|94988789|ref|YP_596890.1| DNA polymerase III subunits gamma and tau [Streptococcus pyogenes
           MGAS9429]
 gi|94542297|gb|ABF32346.1| DNA polymerase III subunit gamma/tau [Streptococcus pyogenes
           MGAS9429]
          Length = 561

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 56/304 (18%), Positives = 99/304 (32%), Gaps = 48/304 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     R +T +E  GQ    + LK  +E+ K         LF GP G GKT+ A++ A+
Sbjct: 4   ALYRKYRSQTFDEMVGQSVISTTLKQAVESGKISHAY----LFSGPRGTGKTSAAKIFAK 59

Query: 77  ELGVNFR---------------------------STSGPVIAKAGDLAALLTNLEDR--- 106
            +    +                           + S   + +  D+    T    R   
Sbjct: 60  AMNCPNQVDGEPCNQCDICRDITNGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSRATY 119

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDFQ--LDLMVGEGPSARSVKINLSRFTLIAATTRVG 164
            V  IDE+H LS      L   +E+    +  ++      +     LSR           
Sbjct: 120 KVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKQ 179

Query: 165 LLTNPLQDRFGIPIRLN--FYEIEDLKTIVQRGAKLTGLA-VTDEAACEIAMRSRGTPRI 221
                +++     +      YE++ L  I +R       A    + A  ++  ++ T  I
Sbjct: 180 ---KAIREHLAWVLDKEGLAYEVDALNLIARRAEGGMRDALSILDQALSLSPDNQVTIAI 236

Query: 222 AGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDL------RYLTMIARNF 275
           A  +   +   A   + + +++E A  AL  L         +         YL  +    
Sbjct: 237 AEEITGSISILALGDYVRYVSQEQATQALAALETIYDSGKSMSRFATDLLTYLRDLLVVK 296

Query: 276 GGGP 279
            GG 
Sbjct: 297 AGGD 300


>gi|260776402|ref|ZP_05885297.1| DNA polymerase III subunits gamma and tau [Vibrio coralliilyticus
           ATCC BAA-450]
 gi|260607625|gb|EEX33890.1| DNA polymerase III subunits gamma and tau [Vibrio coralliilyticus
           ATCC BAA-450]
          Length = 694

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 56/279 (20%), Positives = 95/279 (34%), Gaps = 33/279 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP    E  GQ    + L    E A A+       LF G  G+GKTT+ ++ A+  G+N 
Sbjct: 11  RPTKFNEVVGQRHVLTAL----ENALAQNRLHHAYLFSGTRGVGKTTIGRLFAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D+L ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGICDTCREIDEGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++        + ATT    L   +  R  +   L    ++++
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRC-LQFHLKPISVDNI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              +    K   ++    A   IA  + G+ R A  L     D A       +  +    
Sbjct: 184 HEQLDHILKHEQVSSEPRALGMIAHAADGSMRDALSL----SDQAIALGNGQVLADSVAH 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISA 287
            L  L  D+       L  L  I+       V ++++SA
Sbjct: 240 MLGTLDTDQA------LHLLEAISS--KQPQVAMDSLSA 270


>gi|258541156|ref|YP_003186589.1| DNA polymerase III subunits gamma/tau [Acetobacter pasteurianus IFO
           3283-01]
 gi|256632234|dbj|BAH98209.1| DNA polymerase III gamma/tau subunit [Acetobacter pasteurianus IFO
           3283-01]
 gi|256635291|dbj|BAI01260.1| DNA polymerase III gamma/tau subunit [Acetobacter pasteurianus IFO
           3283-03]
 gi|256638346|dbj|BAI04308.1| DNA polymerase III gamma/tau subunit [Acetobacter pasteurianus IFO
           3283-07]
 gi|256641400|dbj|BAI07355.1| DNA polymerase III gamma/tau subunit [Acetobacter pasteurianus IFO
           3283-22]
 gi|256644455|dbj|BAI10403.1| DNA polymerase III gamma/tau subunit [Acetobacter pasteurianus IFO
           3283-26]
 gi|256647510|dbj|BAI13451.1| DNA polymerase III gamma/tau subunit [Acetobacter pasteurianus IFO
           3283-32]
 gi|256650563|dbj|BAI16497.1| DNA polymerase III gamma/tau subunit [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256653554|dbj|BAI19481.1| DNA polymerase III gamma/tau subunit [Acetobacter pasteurianus IFO
           3283-12]
          Length = 657

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 54/269 (20%), Positives = 92/269 (34%), Gaps = 28/269 (10%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
            +  S         RP T ++  GQ      L+     A A        +  G  G+GKT
Sbjct: 44  DQAASPYRVLARKYRPTTFDDLIGQEAMVRTLR----NAFALGRVAHAFMLTGVRGVGKT 99

Query: 69  TLAQVVARELGV-NFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSI------ 119
           T A+++AR L         GP     G  A  +  L DR  DVL +D   R  +      
Sbjct: 100 TTARIIARALNCIGPDGNGGPTADPCGVCANCVAILNDRHPDVLEMDAASRTGVDDVREI 159

Query: 120 IVEEILYPAMEDFQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           I      P     ++ ++               ++++   ++ T I ATT +  +   + 
Sbjct: 160 IEATRFRPMQGRMKVFIIDEVHMLSRNAFNALLKTLEEPPAQVTFIFATTELRKVPVTVL 219

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R          + E L  +  R A+   + ++ +A   +A  + G+ R    LL    D
Sbjct: 220 SRCQRFDLRRVPQSE-LVGLFSRIAEKEHVRLSSDALALVARAADGSVRDGLSLL----D 274

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGF 260
            A          +    A   +  D +G 
Sbjct: 275 QAIAQGTGQTDADGVIGAT--VISDMLGL 301


>gi|255712733|ref|XP_002552649.1| KLTH0C09900p [Lachancea thermotolerans]
 gi|238934028|emb|CAR22211.1| KLTH0C09900p [Lachancea thermotolerans]
          Length = 322

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 43/250 (17%), Positives = 83/250 (33%), Gaps = 40/250 (16%)

Query: 8   LSRNVSQ-EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           +S N  + E   +   RP  L++  G  E  + L+       A+   + H++  G PG+G
Sbjct: 1   MSANALKLELPWVEKYRPHLLKDIVGNEETITRLQQI-----AQDGNMPHLIISGLPGIG 55

Query: 67  KTTLAQVVARE-----LGVNFRSTSGPVIAKAGDLAALLTNLEDR---------DVLFID 112
           KTT    +A E             +         +   +     +          ++ +D
Sbjct: 56  KTTSVSCLAHELLGNAYSQAVLELNASDDRGIDVVRNQIKQFAQKKCSLPPGRHKIVILD 115

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E   ++   ++ L   ME +                 N +RF    A  +   +  PLQ 
Sbjct: 116 EADSMTAGAQQALRRTMEIYS----------------NTTRFAF--ACNQSNKIIEPLQS 157

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA-GRLLRRVRD 231
           R  I       + + L+ +++   +   +  T++    I   + G  R A   L   V  
Sbjct: 158 RCAILRYSKLQDDQVLRRLLE-VIQAENVQYTNDGLEAIIFTAEGDMRQALNNLQSTVAG 216

Query: 232 FAEVAHAKTI 241
           +  V      
Sbjct: 217 YGLVNGENVF 226


>gi|222475625|ref|YP_002564042.1| DNA polymerase III gamma subunit (dnaZ) [Anaplasma marginale str.
           Florida]
 gi|254995430|ref|ZP_05277620.1| DNA polymerase III gamma subunit (dnaZ) [Anaplasma marginale str.
           Mississippi]
 gi|255003618|ref|ZP_05278582.1| DNA polymerase III gamma subunit (dnaZ) [Anaplasma marginale str.
           Puerto Rico]
 gi|222419763|gb|ACM49786.1| DNA polymerase III gamma subunit (dnaZ) [Anaplasma marginale str.
           Florida]
          Length = 514

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 46/240 (19%), Positives = 71/240 (29%), Gaps = 53/240 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV--------- 73
           RPR+ ++  GQ          +  A         +L VG  G+GKTT A++         
Sbjct: 48  RPRSFDDLVGQDVLV----RILRNAFTIGSLSSPILMVGASGVGKTTCARIVSLCLNCVN 103

Query: 74  ---------------VARELGVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFID 112
                          +      +             D+  LL N           V  ID
Sbjct: 104 GPTPDPCGTCHECVSIKNSTNPDVIEMDAASNTGVDDIRVLLENSSYLPTSSRYKVYIID 163

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LSI     L   +ED                         + ATT V  +   +  
Sbjct: 164 EVHMLSISAFNALLKTLEDPA------------------EHVRFVMATTEVRKVPVTVAS 205

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R    + L     + L   +   AK   +    +    IA  + G+ R A  LL +   +
Sbjct: 206 RC-HRLDLFKLTTDQLFAHLVEIAKKEDIEHDGDGLRLIAENASGSVRNALFLLEQSAIY 264


>gi|163842310|ref|YP_001626714.1| DNA polymerase III subunits gamma and tau [Brucella suis ATCC
           23445]
 gi|163673033|gb|ABY37144.1| DNA polymerase III, subunits gamma and tau [Brucella suis ATCC
           23445]
          Length = 602

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 90/248 (36%), Gaps = 25/248 (10%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+  ++  GQ      L+   E  +         +  G  G+GKTT A+++AR L
Sbjct: 14  ARKYRPQNFDDLIGQEPMVRTLRNAFETGRIAQAW----MLTGVRGVGKTTTARILARAL 69

Query: 79  GVNFRSTSGPVI--AKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
                +   P I  +  G+    +      DV+ +D      I  +  I+E++ Y  +  
Sbjct: 70  NYKTDTVDQPTIDLSTPGEHCQAIMEGCHVDVIEMDAASHTGIDDIREIIEQVRYRPVSA 129

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT +  +   +  R      L  
Sbjct: 130 RYKVYIIDEVHMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKVPITVLSRCQ-RFDLRR 188

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            E   L   ++R A+   + V D +   IA    G+ R +  +     D A    A ++T
Sbjct: 189 IESGTLAQHLRRIAEAEKIEVDDASLAMIARAGEGSARDSLSIF----DQAIAHGAGSVT 244

Query: 243 REIADAAL 250
            E   + L
Sbjct: 245 AEAVRSML 252


>gi|126652951|ref|ZP_01725093.1| DnaX [Bacillus sp. B14905]
 gi|126590281|gb|EAZ84403.1| DnaX [Bacillus sp. B14905]
          Length = 595

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 52/289 (17%), Positives = 94/289 (32%), Gaps = 44/289 (15%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP++  E +GQ      L+  + A K         LF GP G GKT+ A++ A+ L    
Sbjct: 11  RPQSFREMSGQAHVKRTLQNALLANKTTHAY----LFSGPRGTGKTSTAKIFAKALNCEH 66

Query: 83  ------------------------RSTSGPVIAKAGDLAALLTNLE------DRDVLFID 112
                                           ++  ++  ++  +          V  ID
Sbjct: 67  APAKEPCNECATCISITDGSHPDVIEFDAASNSRVEEIRDIIEKVRFAPASSRYKVYIID 126

Query: 113 EIHRLSIIVEEILYPAMED--FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           E+H LS      L   +E+       ++      +     +SR             TN +
Sbjct: 127 EVHMLSTSAFNALLKTLEEPPPHAVFILATTEPHKLPATIISRCQRFDFKRLS---TNDI 183

Query: 171 QDRFGIPIRLN--FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            +R  + +      YE + LK I Q  A     A+      ++   S    ++   LL  
Sbjct: 184 IERMKVVLEDIELPYEEQGLKVIAQSAAGGMRDAL--SLLDQVVSFSGEKLKLEDTLLVT 241

Query: 229 VRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLD-LRYLTMIARNFG 276
                +V +      +  D A +   ++++  D  D LR    +   F 
Sbjct: 242 GSISQDVFYDLAEALKAKDVAQMLALLEQLIVDGKDPLRLSEDLITFFR 290


>gi|110803673|ref|YP_697397.1| DNA polymerase III subunits gamma and tau [Clostridium perfringens
           SM101]
 gi|110684174|gb|ABG87544.1| DNA polymerase III, gamma and tau subunits [Clostridium perfringens
           SM101]
          Length = 547

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 46/250 (18%), Positives = 86/250 (34%), Gaps = 25/250 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + LK  I             LF G  G GKT+ A+V+A+ L    
Sbjct: 11  RPQTFNDVVGQEHITTTLKNQI----INERTAHAYLFCGTRGTGKTSTAKVMAKALNC-L 65

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
               G    +      +   L   D+  +D      +  +  I++++ YP  E      +
Sbjct: 66  DLKDGEPCNQCEMCKKINEGLAI-DITELDAASNNGVDNIRDIIDDVQYPPQEARFKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT    L   +  R            +D+
Sbjct: 125 MDEVHMLSIGAVNAFLKTLEEPPKNVVFILATTDPQKLPITILSRCQ-RFDFKRISRKDI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              +++     G+   D++   +A  S G  R +  +L    D A       +  +   +
Sbjct: 184 TGRLRKIVTEQGIFCDDKSLDLVARVSDGAMRDSLSIL----DQAISIGDGKVDYDELVS 239

Query: 249 ALLRLAIDKM 258
            L  +  D +
Sbjct: 240 MLGLVTNDNL 249


>gi|34497065|ref|NP_901280.1| DNA polymerase III subunits gamma and tau [Chromobacterium
           violaceum ATCC 12472]
 gi|34102922|gb|AAQ59286.1| DNA polymerase subunits gamma and tau [Chromobacterium violaceum
           ATCC 12472]
          Length = 639

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 50/268 (18%), Positives = 90/268 (33%), Gaps = 41/268 (15%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+   +  GQ      L   ++      + L H  L  G  G+GKTT+A+++A+ L   
Sbjct: 11  RPKRFADLVGQEHVVRALSNALK-----EQRLHHAYLLTGTRGVGKTTIARILAKSLNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR--DVLFID-----EIHRLSIIVEEILYPAMEDFQL 134
               +G      G+  A       R  D+L ID      I  +  ++E   Y        
Sbjct: 66  ----TGTTAEPCGECQACRQIDSGRFVDLLEIDAASNTGIDNIREVLENAQYAPTMGRFK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             ++ E             ++++        I ATT    +   +  R  +   L     
Sbjct: 122 VYIIDEVHMLSKSAFNAMLKTLEEPPGHVKFILATTDPQKVPVTVLSRC-LQFSLRNMTP 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           + + + +     + G+     A   +   + G+ R A  LL    D A       +  + 
Sbjct: 181 QQVSSHLAHMLDIEGIHYEAPALALLGRAASGSMRDAQSLL----DQAIAYGLGEVKEDG 236

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIAR 273
             A L  +          D RYL  + +
Sbjct: 237 VRAMLGAV----------DRRYLFTLLQ 254


>gi|169776925|ref|XP_001822928.1| replication factor C subunit 4 [Aspergillus oryzae RIB40]
 gi|83771665|dbj|BAE61795.1| unnamed protein product [Aspergillus oryzae]
          Length = 352

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 78/227 (34%), Gaps = 38/227 (16%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   +   RP  L++  G  E    LK+      A+   + HV+  G PG+GKTT    +
Sbjct: 27  ELPWVEKYRPVFLDDVVGNTETIERLKII-----AKDGNMPHVIISGMPGIGKTTSILCL 81

Query: 75  AR------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIHRLSII 120
           AR            EL  +       V  +    A     L      ++ +DE   ++  
Sbjct: 82  ARQLLGDAYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRHKIVILDEADSMTPG 141

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            ++ L   ME +                   +RF    A  +   +  P+Q R  I    
Sbjct: 142 AQQALRRTMEIYSST----------------TRFAF--ACNQSNKIIEPIQSRCAILRYA 183

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
              + + +K  +++      +  T++    +   + G  R A   L+
Sbjct: 184 RLTDGQVVKR-LKQVCDAEKVEHTEDGIAALVFSAEGDMRQAINNLQ 229


>gi|220927700|ref|YP_002504609.1| DNA polymerase III subunits gamma and tau [Clostridium
           cellulolyticum H10]
 gi|219998028|gb|ACL74629.1| DNA polymerase III, subunits gamma and tau [Clostridium
           cellulolyticum H10]
          Length = 562

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 89/248 (35%), Gaps = 25/248 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP   E+   Q      +K  +++ +         LF G  G GKTT+A++ AR +    
Sbjct: 11  RPLVFEDVVEQEHVVRTIKNTVKSGRIAHAY----LFCGTRGTGKTTMAKIFARAINCIN 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P   +      +L      DV+ ID      +  +  I +E++Y   +      +
Sbjct: 67  PKDGNP-CNECEVCRGILDE-SILDVVEIDAASNNSVDNVREIRDEVVYAPSQARYKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT    L   +  R              +
Sbjct: 125 IDEVHMLSSGAFNALLKTLEEPPGHVVFILATTDPHKLPATILSRCQ-RFDFKKITPAGI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              V+  A+ +G+ + D+ A  IA  + G  R A  +L    D      + TIT +    
Sbjct: 184 AERVKLIAQASGINIDDDGALLIARLADGALRDALSIL----DQCIAEGSTTITYQNVLD 239

Query: 249 ALLRLAID 256
           A+  ++ D
Sbjct: 240 AIGIVSDD 247


>gi|168210522|ref|ZP_02636147.1| DNA polymerase III, subunit gamma and tau [Clostridium perfringens
           B str. ATCC 3626]
 gi|168217757|ref|ZP_02643382.1| DNA polymerase III, gamma and tau subunits [Clostridium perfringens
           NCTC 8239]
 gi|170711454|gb|EDT23636.1| DNA polymerase III, subunit gamma and tau [Clostridium perfringens
           B str. ATCC 3626]
 gi|182380192|gb|EDT77671.1| DNA polymerase III, gamma and tau subunits [Clostridium perfringens
           NCTC 8239]
          Length = 547

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 46/250 (18%), Positives = 86/250 (34%), Gaps = 25/250 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + LK  I             LF G  G GKT+ A+V+A+ L    
Sbjct: 11  RPQTFNDVVGQEHITTTLKNQI----INERTAHAYLFCGTRGTGKTSTAKVMAKALNC-L 65

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
               G    +      +   L   D+  +D      +  +  I++++ YP  E      +
Sbjct: 66  DLKDGEPCNQCEMCKKINEGLAI-DITELDAASNNGVDNIRDIIDDVQYPPQEARFKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT    L   +  R            +D+
Sbjct: 125 MDEVHMLSIGAVNAFLKTLEEPPKNVVFILATTDPQKLPITILSRCQ-RFDFKRISRKDI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              +++     G+   D++   +A  S G  R +  +L    D A       +  +   +
Sbjct: 184 TGRLRKIVTEQGIFCDDKSLDLVARVSDGAMRDSLSIL----DQAISIGDGKVDYDELVS 239

Query: 249 ALLRLAIDKM 258
            L  +  D +
Sbjct: 240 MLGLVTNDNL 249


>gi|150403244|ref|YP_001330538.1| replication factor C large subunit [Methanococcus maripaludis C7]
 gi|166977385|sp|A6VIW1|RFCL_METM7 RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|150034274|gb|ABR66387.1| AAA ATPase central domain protein [Methanococcus maripaludis C7]
          Length = 482

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 53/299 (17%), Positives = 104/299 (34%), Gaps = 44/299 (14%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +  +   RP++L +  G  +   +L  +IE+     +    +L  GPPG GKTTLA  +A
Sbjct: 2   EEWVEKYRPKSLNDVAGHNKTKESLIEWIESFINGQKQKP-ILLAGPPGSGKTTLAYAIA 60

Query: 76  RELGVNFRSTSGP------VIAKAGDLAALLTNL-EDRDVLFIDEIHRLSIIVEEILYPA 128
           ++   +    +        VI++    AA   +L   R ++ +DE+  LS   +      
Sbjct: 61  KDYAFDVIELNASDKRNKDVISQVVGTAATSKSLTGKRTLIVLDEVDGLSGNDD------ 114

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI-PIRLNFYEIED 187
                       G  A  +K+  +    +  T         +  R  +  I +       
Sbjct: 115 -----------RGGVAEIIKVLKTAENPVILTANDVYKPALMTLRNSVNLINVGSVHTNS 163

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD--FAEVAHAKTITREI 245
           +  ++++ A   G  + ++    IA  + G  R A   L+ +      EV  AK +    
Sbjct: 164 IPPVLRKIALKEGFEIDEKVIKTIASHAGGDLRAAINDLQSLATGGSIEVEDAKELPDRD 223

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           ++ ++       M     D+                       + E    IE+ I   +
Sbjct: 224 SEKSIFDAMRIIMKTTHYDIATSATR----------------DVKEELGTIEEWISENL 266


>gi|312077613|ref|XP_003141381.1| hypothetical protein LOAG_05796 [Loa loa]
 gi|307763457|gb|EFO22691.1| hypothetical protein LOAG_05796 [Loa loa]
          Length = 305

 Score = 63.6 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 44/247 (17%), Positives = 78/247 (31%), Gaps = 42/247 (17%)

Query: 27  LEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-----GVN 81
           L E  G       L     AA A+     +++  GPPG GKTT    +ARE+        
Sbjct: 2   LSEVVGNEFVVQRL-----AAFAKQGNTPNIIISGPPGCGKTTSMWALAREMLGDRLKSA 56

Query: 82  FRSTSGPVIAKAGDLAALLTNL---------EDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
               +         +   + N              V+ +DE+  ++   ++ L   ME +
Sbjct: 57  CLELNASDDRGIDVVRNKIKNFAQSKVTLPPGRHKVVILDEVDSMTEGAQQALRRTMEVY 116

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
                              +RF    A  + G +  P+Q R  I +R +    E +   +
Sbjct: 117 SKT----------------TRF--ALACNQSGKVIEPIQSRCAI-LRFSKLSEEQIVKRL 157

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR-RVRDFAEVAHA---KTITREIADA 248
            +  +   +   D     +   ++G  R A   L+  V  F  V      K         
Sbjct: 158 LQVCEAERVTYDDSGIDALVFTAQGDMRQALNNLQCTVVGFNNVTADNVFKVCDEPHPQK 217

Query: 249 ALLRLAI 255
            +  +  
Sbjct: 218 VMQMIEH 224


>gi|170025415|ref|YP_001721920.1| DNA polymerase III subunits gamma and tau [Yersinia
           pseudotuberculosis YPIII]
 gi|169751949|gb|ACA69467.1| DNA polymerase III, subunits gamma and tau [Yersinia
           pseudotuberculosis YPIII]
          Length = 658

 Score = 63.6 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 76/242 (31%), Gaps = 53/242 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+ L    
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCET 66

Query: 83  ------------------------RSTSGPVIAKAGDLAALLTNLE------DRDVLFID 112
                                            K  D   LL N++         V  ID
Sbjct: 67  GITATPCGTCANCQEIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS      L   +E+                    +    + ATT    L   +  
Sbjct: 127 EVHMLSRHSFNALLKTLEE------------------PPAHVKFLLATTDPQKLPVTILS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R  +   L   ++E ++  +++      +     A   +A  + G+ R A  L  +    
Sbjct: 169 RC-LQFHLKALDVEQIRAQLEKVLLAEQITSDARALQLLARAADGSMRDALSLTDQAVSM 227

Query: 233 AE 234
            +
Sbjct: 228 GQ 229


>gi|168206163|ref|ZP_02632168.1| DNA polymerase III, gamma and tau subunit [Clostridium perfringens
           E str. JGS1987]
 gi|170662345|gb|EDT15028.1| DNA polymerase III, gamma and tau subunit [Clostridium perfringens
           E str. JGS1987]
          Length = 547

 Score = 63.6 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 46/250 (18%), Positives = 86/250 (34%), Gaps = 25/250 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + LK  I             LF G  G GKT+ A+V+A+ L    
Sbjct: 11  RPQTFNDVVGQEHITTTLKNQI----INERTAHAYLFCGTRGTGKTSTAKVMAKALNC-L 65

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
               G    +      +   L   D+  +D      +  +  I++++ YP  E      +
Sbjct: 66  DLKDGEPCNQCEMCKKINEGLAI-DITELDAASNNGVDNIRDIIDDVQYPPQEARFKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT    L   +  R            +D+
Sbjct: 125 MDEVHMLSIGAVNAFLKTLEEPPKNVVFILATTDPQKLPITILSRCQ-RFDFKRISRKDI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              +++     G+   D++   +A  S G  R +  +L    D A       +  +   +
Sbjct: 184 TGRLRKIVTEQGIFCDDKSLDLVARVSDGAMRDSLSIL----DQAISIGDGKVDYDELVS 239

Query: 249 ALLRLAIDKM 258
            L  +  D +
Sbjct: 240 MLGLVTNDNL 249


>gi|159905016|ref|YP_001548678.1| replication factor C large subunit [Methanococcus maripaludis C6]
 gi|226739139|sp|A9A6N2|RFCL_METM6 RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|159886509|gb|ABX01446.1| AAA ATPase central domain protein [Methanococcus maripaludis C6]
          Length = 484

 Score = 63.6 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 51/298 (17%), Positives = 105/298 (35%), Gaps = 42/298 (14%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +  +   RP++L +  G  +    L  +IE+  +  +    +L  GPPG GKTTLA  +A
Sbjct: 2   EEWVEKYRPKSLNDVAGHNKTKETLIEWIESFVSGQKQKP-ILLAGPPGSGKTTLAYAIA 60

Query: 76  RELGVNFRSTSGP------VIAKAGDLAALLTNL-EDRDVLFIDEIHRLSIIVEEILYPA 128
           ++   +    +        VI++    AA   ++   R ++ +DE+  LS   +      
Sbjct: 61  KDYAYDVIELNASDKRNKDVISQVVGTAATSKSITGRRTLIVLDEVDGLSGNDDRG---G 117

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + +    L   E P             ++ A          L++   +    + +    +
Sbjct: 118 VAEIIKVLKTAENP------------VILTANDVYKPALMTLRNNVNLINVGSVHTN-SI 164

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD--FAEVAHAKTITREIA 246
             ++++ A   G  + ++    IA  + G  R A   L+ +      EV  AK +    +
Sbjct: 165 PPVLRKIALKEGFEIDEKVIKTIASHAGGDLRAAINDLQSLATGGSLEVEDAKELPDRDS 224

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           + ++       M     D+                       + E    IE+ I   +
Sbjct: 225 EKSIFDAMRIIMKTTHYDIATSATR----------------DVKEELGTIEEWISENL 266


>gi|28209849|ref|NP_780793.1| DNA polymerase III subunits gamma and tau [Clostridium tetani E88]
 gi|28202284|gb|AAO34730.1| DNA polymerase III subunits gamma and tau [Clostridium tetani E88]
          Length = 552

 Score = 63.6 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 83/222 (37%), Gaps = 23/222 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP T E+  GQ      LK  I+      E + H  LF G  G GKT+ A+++A+ +   
Sbjct: 14  RPSTFEDVIGQKHITITLKNQIK-----NERIAHAYLFCGTRGTGKTSTAKILAKAVNCL 68

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDL 136
                G    +      + +N+   D+  +D      +  +  I+EE+ YP  E      
Sbjct: 69  DLRD-GEPCNECEICKKINSNMLI-DIEELDAASNNSVDNIRSIIEEVYYPPREAKYKVY 126

Query: 137 MVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ++ E             ++++   S    I ATT    L   +  R          + ED
Sbjct: 127 IMDEVHMLSTGAVNAFLKTLEEPPSNVIFILATTDPQKLPITILSRCQ-RFDFKRIKSED 185

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           +   ++      G    D +   I+  S G  R A  +L +V
Sbjct: 186 IFQRLRFIITQQGFFADDNSLRLISRISDGAMRDALGVLDQV 227


>gi|299116532|emb|CBN74720.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 382

 Score = 63.6 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 71/231 (30%), Gaps = 37/231 (16%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
               Q    +   RP +LEE     +    L+  I + K     L H+LF GPPG GKT+
Sbjct: 57  ETARQTLPWVEKYRPSSLEELVAHEDIVGILQKLIASNK-----LPHLLFYGPPGTGKTS 111

Query: 70  LAQVVAR------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-DVLFIDEIHR 116
                A+            EL  +       V  +  + A           ++ +DE   
Sbjct: 112 TILACAKKLYGADFKMMVLELNASDDRGIDVVRGQIKEFAGTKRLFSSGVKLVILDEADA 171

Query: 117 LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
           ++   +  L   +E +                              V  +   LQ R   
Sbjct: 172 MTNDAQFALRRVIEKYT------------------KHTRFCMICNYVNKIIPALQSRC-T 212

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             R    + E ++  +Q       + +T +    +    +G  R    LL+
Sbjct: 213 KFRFAPLKPEQIQGRLQHVVDQEKVTITPDGVEAVMRLGQGDMRRVLNLLQ 263


>gi|269958349|ref|YP_003328136.1| DNA polymerase III, subunits gamma and tau [Anaplasma centrale str.
           Israel]
 gi|269848178|gb|ACZ48822.1| DNA polymerase III, subunits gamma and tau [Anaplasma centrale str.
           Israel]
          Length = 513

 Score = 63.6 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 50/242 (20%), Positives = 74/242 (30%), Gaps = 53/242 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV--------- 73
           RPR  ++  GQ          +  A         +L VG  G+GKTT A++         
Sbjct: 48  RPRNFDDLVGQDVLV----RILRNAFTIGSLSSPILMVGASGVGKTTCARIVSLCLNCVN 103

Query: 74  ---------------VARELGVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFID 112
                          +      +             D+  LL N           V  ID
Sbjct: 104 GPTPDPCGLCHECVSIQNFTNPDVIEIDAASNTGVDDIRVLLENSSYLPASSRYKVYIID 163

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LSI     L   +ED                         + ATT V  +   +  
Sbjct: 164 EVHMLSISAFNALLKTLEDPA------------------EHVRFVMATTEVRKVPVTVAS 205

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R    + L+    + L T +   AK  G+   DE    IA  + G+ R A  LL +   +
Sbjct: 206 RC-HRLDLSKLTSDQLFTHLVEVAKKEGIEHDDEGLRLIAENASGSARNALFLLEQSAIY 264

Query: 233 AE 234
             
Sbjct: 265 TR 266


>gi|251781218|ref|ZP_04824134.1| DNA polymerase III, gamma and tau subunit [Clostridium botulinum E1
           str. 'BoNT E Beluga']
 gi|243081665|gb|EES47726.1| DNA polymerase III, gamma and tau subunit [Clostridium botulinum E1
           str. 'BoNT E Beluga']
          Length = 544

 Score = 63.6 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 48/243 (19%), Positives = 87/243 (35%), Gaps = 27/243 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T  +  GQ    + LK      +   + + H  LF G  G GKT+ A+V+A+ L   
Sbjct: 11  RPKTFNDVVGQEHITTTLK-----NEILNDRIAHAYLFCGTRGTGKTSTAKVMAKALNCF 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHR-----LSIIVEEILYPAMEDFQLDL 136
               +G    +      +   L   DV  +D         +  I+++  YP  E      
Sbjct: 66  NLQ-NGEPCNECEMCKKINEGLSM-DVTELDAASNNGIDRIRDIIDDTKYPPQEGKYKIY 123

Query: 137 MVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ++ E             ++++   S    I ATT    L   +  R            +D
Sbjct: 124 ILDEVHMLSGGAVNAFLKTLEEPPSNVIFILATTDPQKLPITILSRCQ-RFDFKRINQKD 182

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           +   +++  +   + V D++   IA  + G  R +  +L    D A       I  +   
Sbjct: 183 ISDRLRKITEAQNVNVDDKSLDLIARVADGAMRDSLSIL----DQAIAMGDNNIKYDDLI 238

Query: 248 AAL 250
           + L
Sbjct: 239 SIL 241


>gi|169834932|ref|YP_001715785.1| DNA polymerase III, subunits gamma and tau [Clostridium botulinum
           A3 str. Loch Maree]
 gi|169409039|gb|ACA57449.1| DNA polymerase III, subunits gamma and tau [Clostridium botulinum
           A3 str. Loch Maree]
          Length = 471

 Score = 63.6 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 49/306 (16%), Positives = 110/306 (35%), Gaps = 42/306 (13%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPR  ++  GQ     N K+ +   + R+  + H  LF G  G GKTT A++ A+ +  +
Sbjct: 7   RPRFFKDVVGQ---GENTKILLN--QVRSGYIGHAYLFCGNRGSGKTTTARIFAKAVNQH 61

Query: 82  FR-STSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLD 135
                    +++  D    +      D++ +D      I  +  I+E+  Y   E     
Sbjct: 62  DNGEPLNNELSRKIDAGNCI------DIVELDAASHNGIEDIRNIIEQAQYAPSECKYRV 115

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             + ++        I ATT    L   +  R          ++ 
Sbjct: 116 FIIDEVHMLSISAVNAFLKVLEEPPKNVIFILATTDPQKLPITVLSRCQ-RFDFKRIDVT 174

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT---- 242
           D+   ++   +   + + +++   I++ + G  R A  +L +VR   E+ +    T    
Sbjct: 175 DIFNRLKYICEHEKIKIDNKSLKLISIVADGAMRDAISILDQVRTMEEITYNNVTTLLGI 234

Query: 243 ---REIADAALLRLAIDKM-GFDQLDLRYLT------MIARNFGGGPVGIETISAGLSEP 292
               +I + A   +  D +     ++   +        + ++       +  ++   +  
Sbjct: 235 MIEEDIRNIAFSIIKKDTISALQHINKAVMQNKKDANQLMKDLQKYFRNVLVLAINPNTE 294

Query: 293 RDAIED 298
              IE+
Sbjct: 295 IATIEE 300


>gi|72072160|ref|XP_787339.1| PREDICTED: similar to replication factor C p37 subunit
           [Strongylocentrotus purpuratus]
 gi|115929579|ref|XP_001178763.1| PREDICTED: similar to replication factor C p37 subunit
           [Strongylocentrotus purpuratus]
          Length = 355

 Score = 63.6 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 76/237 (32%), Gaps = 25/237 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RPRT++E   Q E  + LK  ++ A      L ++LF GPPG GKT+     +R
Sbjct: 29  PWVEKYRPRTVDEVAYQDEVVAVLKKSLQGAD-----LPNMLFYGPPGTGKTSTILAASR 83

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP---AMEDFQ 133
           EL       S  +   A D   +         +  D++ + +      + P       F+
Sbjct: 84  ELFGTDMYRSRVLELNASDERGIQ--------VVRDKVKKFAQTAAGGIRPDGKPCPPFK 135

Query: 134 LDLMVGEGPSARSVKINLSR--------FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           + ++          +  L R                 +  +  PL  R     R      
Sbjct: 136 IIILDEADSMTYDAQAALRRTMEKQSKNTKFCLICNYISRIIEPLTSRCS-KFRFKPLSK 194

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
                 ++   +   +   +EA   I   S G  R +   L+ V         +   
Sbjct: 195 PIQGKKLREICEAENINCGEEALEAILKLSEGDMRKSITFLQSVHRLQREDGIRVED 251


>gi|327459781|gb|EGF06121.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
           SK1057]
          Length = 556

 Score = 63.6 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 47/270 (17%), Positives = 81/270 (30%), Gaps = 53/270 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     R +T  +  GQ    + L+  +E  K         LF GP G GKT++A++ A+
Sbjct: 4   ALYRKYRSQTFGQLVGQQVVATTLRQAVEQGKISHAY----LFSGPRGTGKTSVAKIFAK 59

Query: 77  ELGVNFR------------------------STSGPVIAKAGDLAALLTN------LEDR 106
            +    +                                   ++  +         L   
Sbjct: 60  AMNCPNQKEGEPCNECYICQAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLAKH 119

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
            V  IDE+H LS      L   +E+                         I ATT +  +
Sbjct: 120 KVYIIDEVHMLSTGAFNALLKTLEEPT------------------ENVVFILATTELHKI 161

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
              +  R       +    + +  I +   +  G+    E    IA R+ G  R A  +L
Sbjct: 162 PATILSRVQRFEFKSIKTQDIISHI-EWILEQEGIDFEKEGVQIIARRAEGGMRDALSIL 220

Query: 227 RRVRDFAEVAHAKTITREIADAALLRLAID 256
            +     +     T   E    ++   A+D
Sbjct: 221 DQALSLTQENRLTTDIAEEITGSISLGALD 250


>gi|293392503|ref|ZP_06636823.1| DNA polymerase III subunit tau [Serratia odorifera DSM 4582]
 gi|291424905|gb|EFE98114.1| DNA polymerase III subunit tau [Serratia odorifera DSM 4582]
          Length = 653

 Score = 63.6 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 46/242 (19%), Positives = 86/242 (35%), Gaps = 25/242 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L   +   +         LF G  G+GKTT+A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTALANGLTLGRIHHAY----LFSGTRGVGKTTIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGQCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++   +    + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++   +   +A    A   +A  + G+ R A  L     D A       +T      
Sbjct: 184 RNQLETVLQAEQIASDARALQLLARAADGSMRDALSL----TDQAIAMGEGQVTSATVSH 239

Query: 249 AL 250
            L
Sbjct: 240 ML 241


>gi|254707264|ref|ZP_05169092.1| DNA polymerase III subunits gamma and tau [Brucella pinnipedialis
           M163/99/10]
 gi|261314747|ref|ZP_05953944.1| DNA polymerase III gamma and tau [Brucella pinnipedialis
           M163/99/10]
 gi|261303773|gb|EEY07270.1| DNA polymerase III gamma and tau [Brucella pinnipedialis
           M163/99/10]
          Length = 602

 Score = 63.6 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 48/248 (19%), Positives = 89/248 (35%), Gaps = 25/248 (10%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+  ++  GQ      L+   E  +         +  G  G+GKTT  +++AR L
Sbjct: 14  ARKYRPQNFDDLIGQEPMVRTLRNAFETGRIAQAW----MLTGVRGVGKTTTVRILARAL 69

Query: 79  GVNFRSTSGPVI--AKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
                +   P I  +  G+    +      DV+ +D      I  +  I+E++ Y  +  
Sbjct: 70  NYKTDTVDQPTIDLSTPGEHCQAIMEGRHVDVIEMDAASHTGIDDIREIIEQVRYRPVSA 129

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT +  +   +  R      L  
Sbjct: 130 RYKVYIIDEVHMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKVPITVLSRCQ-RFDLRR 188

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            E   L   ++R A+   + V D +   IA    G+ R +  +     D A    A ++T
Sbjct: 189 IESGTLAQHLRRIAEAEKIEVDDASLAMIARAGEGSARDSLSIF----DQAIAHGAGSVT 244

Query: 243 REIADAAL 250
            E   + L
Sbjct: 245 AEAVRSML 252


>gi|67459756|ref|YP_247380.1| DNA polymerase III subunits gamma and tau [Rickettsia felis
           URRWXCal2]
 gi|67005289|gb|AAY62215.1| DNA polymerase III gamma and tau chains [Rickettsia felis
           URRWXCal2]
          Length = 521

 Score = 63.6 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 80/232 (34%), Gaps = 21/232 (9%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP    E  GQ      L   I   +         L  G  G+GKTT A+++A+ +
Sbjct: 26  ARKYRPSNFTELQGQEVLVKVLSYTILNDRLTGGY----LLTGIRGVGKTTSARIIAKAV 81

Query: 79  GVNFRSTSGPVIAKAGDLAALLT--NLEDRDVLFIDEIHRLS-----IIVEEILYPAMED 131
             +   T    I         ++  N    D++ ID   + S      I+E   Y  ++ 
Sbjct: 82  NCSALITENTTIKTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQG 141

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT V  +   +  R      L  
Sbjct: 142 KHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQ-RYDLRR 200

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
              E++  +++   K   L    EA   IA +S G+ R A  +L +    + 
Sbjct: 201 LSFEEIFKLLEYITKQENLKTDIEALRIIAHKSEGSARDAVSILDQAASMSA 252


>gi|72160455|ref|YP_288112.1| DNA polymerase III subunits gamma and tau [Thermobifida fusca YX]
 gi|71914187|gb|AAZ54089.1| ATPase [Thermobifida fusca YX]
          Length = 692

 Score = 63.6 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 46/265 (17%), Positives = 85/265 (32%), Gaps = 31/265 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T  E  GQ      L+  +   +         LF GP G GKT+ A+++AR
Sbjct: 4   ALYRKYRPATFAEVRGQEHVTEPLRQALRNGRVNHAY----LFSGPRGCGKTSSARILAR 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR----DVLFID-----EIHRLSIIVEEILYP 127
            L        GP     G+  + +    D     DV+ ID      +     + E   + 
Sbjct: 60  SLNC----AKGPTPDPCGECDSCVALAPDGGGSIDVIEIDAASHGGVDDARDLRERAFFA 115

Query: 128 AMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            +       ++ E             + V+        + ATT    +   ++ R     
Sbjct: 116 PVNSRYKVYIIDEAHMVTREGFNALLKLVEEPPPHLKFVFATTEPEKVIGTIRSR-THHY 174

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH- 237
                    L+ +++       +     A   +     G+ R    +L ++   ++    
Sbjct: 175 PFRLIPPNTLRELIEEILNEEKVPYDPAALPLVIRAGGGSARDTLSILDQLLAGSDERGI 234

Query: 238 ---AKTITREIADAALLRLAIDKMG 259
              A        D++LL   +D +G
Sbjct: 235 TREAAVQLLGYTDSSLLGEMVDALG 259


>gi|224009073|ref|XP_002293495.1| replication factor C 36 kDa subunit [Thalassiosira pseudonana
           CCMP1335]
 gi|220970895|gb|EED89231.1| replication factor C 36 kDa subunit [Thalassiosira pseudonana
           CCMP1335]
          Length = 321

 Score = 63.6 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 41/239 (17%), Positives = 72/239 (30%), Gaps = 39/239 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP  LE+     +  + L   I++     + L H+L  GPPG GKT+     A+
Sbjct: 2   PWVEKYRPAKLEDLVAHEDIVAILTRLIDS-----DNLPHLLLYGPPGTGKTSTIVAAAK 56

Query: 77  --------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-DVLFIDEIHRLSIIV 121
                         EL  +       V  +  + A           ++ +DE   ++   
Sbjct: 57  RMYGSTAAYSSMALELNASDSRGIDVVRNEIKEFAGTRQLFHSGIKLIILDEADAMTSDA 116

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           +  L   +E                                V  +   LQ R     R  
Sbjct: 117 QFALRRVIEKHT------------------KNARFCLICNYVSKIIPALQSRC-TRFRFA 157

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
             + E +++ +   A       T++    I   S G  R    LL+     +E+   K 
Sbjct: 158 PLKQEQIRSRLVEVADAEKCNYTEDGIQAILDLSGGDMRRVLNLLQSTAMGSEIVDEKN 216


>gi|68064516|ref|XP_674242.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56492674|emb|CAH95634.1| conserved hypothetical protein [Plasmodium berghei]
          Length = 512

 Score = 63.6 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 45/239 (18%), Positives = 90/239 (37%), Gaps = 43/239 (17%)

Query: 6   GLLSRNVSQEDADISLLRPRTL-----------EEFTGQVEACSNLKVFIEAAKARAEAL 54
            +++    +E+ D +   P +L           E++    E  S     +   K   E L
Sbjct: 138 NVINEKEQEENPDNTN--PNSLPLHKLYQPIYKEDYI--NEIRSKRNPLLT--KILDEDL 191

Query: 55  D-HVLFVGPPGLGKTTLAQVVARELGV-----NFRSTSGPVIAKAGDLAALLTNL-EDRD 107
           + +++  GPPG GK++L  V+  +           +     I +  D + +   L + R 
Sbjct: 192 NFNLILCGPPGSGKSSLINVIKNKTHNLFITLFHLNNFNTEIRRIYDQSIINYKLSKRRM 251

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           +L I +I+RL+   +E L   ++     L+                         + +L 
Sbjct: 252 ILCIKDINRLNKPQQEHLLLVLKKGYFYLLAT------------------CLYNPMNILN 293

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
             L  R  + + L+ Y+  +L  I++R      + + D A   I   S G  R+A  ++
Sbjct: 294 ASLSSRC-LYLYLSPYDKIELALIIKRIINKLNIEIEDNALNVIISHSSGDARVAINII 351


>gi|315168761|gb|EFU12778.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
           TX1341]
          Length = 586

 Score = 63.6 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 51/294 (17%), Positives = 99/294 (33%), Gaps = 30/294 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           R +  ++  GQ      LK  I     + +     LF GP G GKT+ A++ A+ +    
Sbjct: 11  RSQRFDDVVGQKAITQTLKNAI----VQKKTSHAYLFTGPRGTGKTSAAKIFAKAINCKH 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P      +    +T     DV+ ID      +  +  I ++  Y   +      +
Sbjct: 67  SQDGEP--CNVCETCVAITEGRLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQAEYKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT    +   +  R            +D+
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRTQ-RFDFKRISTQDI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              +    K   L   ++A   I   + G  R A  +L +   F++            + 
Sbjct: 184 VDHMAHIMKEMALDYEEQALYVIGRAAEGGMRDALSILDQTISFSDEKV-------TLED 236

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           A+       + ++ +D      +A +      G+E+I     E R  +EDL+  
Sbjct: 237 AMQVTG--SLTYEMMDHYIQCCVAGDVERALEGLESILGEGKEARRFLEDLLLY 288


>gi|238899119|ref|YP_002924801.1| DNA polymerase III, tau and gamma subunits; DNA elongation factor
           III [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
 gi|229466879|gb|ACQ68653.1| DNA polymerase III, tau and gamma subunits; DNA elongation factor
           III [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
          Length = 640

 Score = 63.6 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 50/258 (19%), Positives = 79/258 (30%), Gaps = 57/258 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV-- 80
           RP+T  E  GQ    + L   +   +         L  G  G+GKT++A+++A+ L    
Sbjct: 11  RPQTFSEVVGQEHVLTALVNSLSLGRIHHAY----LLSGTRGVGKTSIARLIAKGLNCTS 66

Query: 81  ----------------------NFRSTSGPVIAKAGDLAALLTNL------EDRDVLFID 112
                                 +          K  D   LL NL          V  ID
Sbjct: 67  GITATPCGKCIHCQGIEQGHFIDLIEIDAASRTKVEDTRELLDNLPYSPTQGRFKVYLID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS      L   +E+                    S    + ATT    L   +  
Sbjct: 127 EVHMLSRHSFNALLKTLEE------------------PPSHVKFLLATTEPKKLPVTIIS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R  +   L       +   +++      +    EA   +A  + G+ R A  L     D 
Sbjct: 169 RC-LQFHLKALNALVILNQLEKILAAEKIDSDTEALKLLAKAASGSMRDALSL----TDQ 223

Query: 233 AEVAHAKTITREIADAAL 250
           A    +  +T +I    L
Sbjct: 224 AVAIGSGKVTTQIVREML 241


>gi|182625401|ref|ZP_02953174.1| DNA polymerase III subunit gamma/tau [Clostridium perfringens D
           str. JGS1721]
 gi|177909398|gb|EDT71850.1| DNA polymerase III subunit gamma/tau [Clostridium perfringens D
           str. JGS1721]
          Length = 547

 Score = 63.6 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 46/250 (18%), Positives = 86/250 (34%), Gaps = 25/250 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + LK  I             LF G  G GKT+ A+V+A+ L    
Sbjct: 11  RPQTFNDVVGQEHITTTLKNQI----INERTAHAYLFCGTRGTGKTSTAKVMAKALNC-L 65

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
               G    +      +   L   D+  +D      +  +  I++++ YP  E      +
Sbjct: 66  DLKDGEPCNQCEMCKKINEGLAI-DITELDAASNNGVDNIRDIIDDVQYPPQEARFKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT    L   +  R            +D+
Sbjct: 125 MDEVHMLSIGAVNAFLKTLEEPPKNVVFILATTDPQKLPITILSRCQ-RFDFKRISRKDI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              +++     G+   D++   +A  S G  R +  +L    D A       +  +   +
Sbjct: 184 TGRLRKIVTEQGIFCDDKSLDLVARVSDGAMRDSLSIL----DQAISIGDGKVDYDELVS 239

Query: 249 ALLRLAIDKM 258
            L  +  D +
Sbjct: 240 MLGLVTNDNL 249


>gi|167759644|ref|ZP_02431771.1| hypothetical protein CLOSCI_02002 [Clostridium scindens ATCC 35704]
 gi|167662770|gb|EDS06900.1| hypothetical protein CLOSCI_02002 [Clostridium scindens ATCC 35704]
          Length = 523

 Score = 63.6 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 57/269 (21%), Positives = 95/269 (35%), Gaps = 28/269 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     RP   E+  GQ      LK  I+A     E + H  LF G  G GKTT+A++ A
Sbjct: 5   ALYRKFRPDEFEDVKGQDAIVKTLKNQIKA-----ERIGHAYLFCGTRGTGKTTVAKIFA 59

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAME 130
           + +         P   +     ++        V+ ID      +  +  I EE+ Y   E
Sbjct: 60  KAVNCEHPVDGSP-CGECAMCRSIAAGTSMN-VIEIDAASNNGVDNIREIREEVAYRPTE 117

Query: 131 DFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
                 ++ E             ++++        I ATT    +   +  R        
Sbjct: 118 GRYKVYIIDEVHMLSIGAFNALLKTLEEPPEYVIFILATTEAHKIPITILSRCQRYDFKR 177

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
              IE +   ++      G  V ++A   IA  + G+ R +  LL +   F      + +
Sbjct: 178 I-SIETISDRLRELVDKEGWEVEEKAVRYIAKMADGSMRDSLSLLDQCVAFYI---GEKL 233

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTM 270
           T +     L   A+D   F +L    L+M
Sbjct: 234 TYDHVLEVL--GAVDTETFSRLLRELLSM 260


>gi|119872171|ref|YP_930178.1| replication factor C large subunit [Pyrobaculum islandicum DSM
           4184]
 gi|150415668|sp|A1RSA3|RFCL_PYRIL RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|119673579|gb|ABL87835.1| replication factor C large subunit [Pyrobaculum islandicum DSM
           4184]
          Length = 423

 Score = 63.6 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 56/236 (23%), Positives = 87/236 (36%), Gaps = 41/236 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEA------------AKARAEAL---DHVLFVG 61
             +   RP+T EE   Q EA   L  +I A            AK + + +     VL  G
Sbjct: 4   PWVEKYRPKTFEEIVNQEEAKYTLASWICAKFKAPREFCTRWAKKKDKEIVEAKAVLLAG 63

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIA---------KAGDLAALLTNLEDRDVLFID 112
           PPG+GKTT+   +ARE+       +   +            G   A L   E + VLF D
Sbjct: 64  PPGIGKTTIVHALAREIKYELIELNASDVRTGERIKQVVGRGLREASLFGYEGKLVLF-D 122

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+  L +  +      +E     + + + P             ++ A         PL+D
Sbjct: 123 EVDGLHVKED---LGGLETIVEIIEIAKVP------------VIMTANNPYDPKFRPLRD 167

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
              + I L     +D+  +++R     G    +EA   IA  S G  R A   L+ 
Sbjct: 168 -IALVINLKRLSEDDVVEVLRRICANEGAKCEEEALRSIAKSSLGDLRAAINDLQM 222


>gi|327469511|gb|EGF14980.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
           SK330]
          Length = 556

 Score = 63.6 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 47/270 (17%), Positives = 81/270 (30%), Gaps = 53/270 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     R +T  +  GQ    + L+  +E  K         LF GP G GKT++A++ A+
Sbjct: 4   ALYRKYRSQTFGQLVGQQVVATTLRQAVEQGKISHAY----LFSGPRGTGKTSVAKIFAK 59

Query: 77  ELGVNFR------------------------STSGPVIAKAGDLAALLTN------LEDR 106
            +    +                                   ++  +         L   
Sbjct: 60  AMNCPNQKDGEPCNDCYICQAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLAKH 119

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
            V  IDE+H LS      L   +E+                         I ATT +  +
Sbjct: 120 KVYIIDEVHMLSTGAFNALLKTLEEPT------------------ENVVFILATTELHKI 161

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
              +  R       +    + +  I +   +  G+    E    IA R+ G  R A  +L
Sbjct: 162 PATILSRVQRFEFKSIKTQDIITHI-EWILEQEGIDFEQEGVQIIARRAEGGMRDALSIL 220

Query: 227 RRVRDFAEVAHAKTITREIADAALLRLAID 256
            +     +     T   E    ++   A+D
Sbjct: 221 DQALSLTQENRLTTDIAEEITGSISLGALD 250


>gi|299117347|emb|CBN75303.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 354

 Score = 63.6 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 42/243 (17%), Positives = 73/243 (30%), Gaps = 46/243 (18%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+T+++   Q E  + LK  I         L H+LF GPPG GKT+ A  +AR
Sbjct: 29  PWVEKYRPKTVDDVAHQDEVTNTLKGAIATG-----VLPHLLFYGPPGTGKTSTALALAR 83

Query: 77  ------ELGVNFRSTSGPVIAKAGDLAALLTNLED----------------RDVLFIDEI 114
                          +         +   +                       V+ +DE 
Sbjct: 84  TLFGPDTYRDRILELNASDERGIKVVREKIKTFAQVAVGRATHQAGYPCPPFKVIILDEA 143

Query: 115 HRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRF 174
             ++   +  L   ME +                  ++RF        V  +  PL  R 
Sbjct: 144 DTMTPDAQSALRRTMETYS----------------TVTRF--CLICNYVTRIIEPLASRC 185

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
               R +      +   +   ++   + +  +    I   S G  R A   ++    F  
Sbjct: 186 A-KFRFSALGQGAMLDRLSYISREEDVKIAADGLQAIVDLSGGDMRKAVTAMQSASQFYA 244

Query: 235 VAH 237
            A 
Sbjct: 245 GAE 247


>gi|303322344|ref|XP_003071165.1| activator 1 subunit, putative [Coccidioides posadasii C735 delta
           SOWgp]
 gi|240110864|gb|EER29020.1| activator 1 subunit, putative [Coccidioides posadasii C735 delta
           SOWgp]
          Length = 283

 Score = 63.6 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 81/232 (34%), Gaps = 43/232 (18%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   +   RP  L++  G  E    LK+      AR   + HV+  G PG+GKTT    +
Sbjct: 27  ELPWVEKYRPVFLDDVVGNTETIERLKII-----ARDGNMPHVIISGMPGIGKTTSILCL 81

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNL-------------------EDRDVLFIDEIH 115
           AR++  +    +   +  + +    L  +                       ++ +DE  
Sbjct: 82  ARQMLGDVYKEAVLELNASDERVRFLAGIDVVRNRIKGFAQKKVTLPPGKHKLVILDEAD 141

Query: 116 RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
            ++   ++ L   ME +                   +RF    A  +   +  PLQ R  
Sbjct: 142 SMTSGAQQALRRTMEIYSAT----------------TRFAF--ACNQSNKIIEPLQSRCA 183

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
           I       + + +K ++Q   +   +  +D+    +   + G  R A   L+
Sbjct: 184 ILRYSRLTDAQIVKRLMQ-ICEAEDVKHSDDGIAALVFSAEGDMRQAINNLQ 234


>gi|326790139|ref|YP_004307960.1| DNA polymerase III subunits gamma and tau [Clostridium lentocellum
           DSM 5427]
 gi|326540903|gb|ADZ82762.1| DNA polymerase III, subunits gamma and tau [Clostridium lentocellum
           DSM 5427]
          Length = 537

 Score = 63.6 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 78/230 (33%), Gaps = 21/230 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP   ++  GQ      LK  I + +         LF G  G GKT++A++ AR
Sbjct: 5   ALYRKYRPYIFDDVVGQGHIVRTLKNQINSHRVAHAY----LFSGSRGTGKTSIAKIFAR 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +       +G    K      +        ++ ID      +  +  I EE+ Y     
Sbjct: 61  AVNCE-EPVNGSACGKCETCKRISDGAGIN-IIEIDAASHNGVDNIREINEEVKYTPAVG 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++   +    I ATT    +   +  R         
Sbjct: 119 KYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTDPQKIPVTILSRCQRFDFKRI 178

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
              E  +T++    +   + + ++A   IA  + G  R A  +L +   F
Sbjct: 179 SAKEIEETLISY-MQTEKIDIEEKALAYIARLADGGMRDALSILEQSISF 227


>gi|254506937|ref|ZP_05119076.1| DNA polymerase III subunits gamma and tau [Vibrio parahaemolyticus
           16]
 gi|219550222|gb|EED27208.1| DNA polymerase III subunits gamma and tau [Vibrio parahaemolyticus
           16]
          Length = 712

 Score = 63.6 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 54/265 (20%), Positives = 80/265 (30%), Gaps = 57/265 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP    E  GQ    + L    E A A+       LF G  G+GKTT+ ++ A+ L    
Sbjct: 11  RPTKFTEVVGQSHVLTAL----ENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCET 66

Query: 83  RSTS------------------------GPVIAKAGDLAALLTNLEDRD------VLFID 112
             TS                             K  D   LL N++ +       V  ID
Sbjct: 67  GITSTPCGQCATCKEIDEGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRFKVYLID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS      L   +E+                         + ATT    L   +  
Sbjct: 127 EVHMLSRHSFNALLKTLEE------------------PPEYVKFLLATTDPQKLPVTILS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R  +   L    ++ +   +        +     A   IA  + G+ R A  L     D 
Sbjct: 169 RC-LQFHLKPISVDTIHEQLDHILAKEQVTSEARALGMIAHAADGSMRDALSL----TDQ 223

Query: 233 AEVAHAKTITREIADAALLRLAIDK 257
           A      T+  +     L  L  D+
Sbjct: 224 AIALGNGTVLTDSVAHMLGTLDTDQ 248


>gi|209877196|ref|XP_002140040.1| replication factor C, subunit 4 [Cryptosporidium muris RN66]
 gi|209555646|gb|EEA05691.1| replication factor C, subunit 4, putative [Cryptosporidium muris
           RN66]
          Length = 335

 Score = 63.6 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 78/224 (34%), Gaps = 18/224 (8%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
              +  +   RPR + +   Q E    LK  +E        + H+LF GPPG GKT+   
Sbjct: 5   QNNNLWVEKYRPRQIADIYHQTEVVKMLKNVLE-----FGNMPHLLFYGPPGTGKTSAIL 59

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLED-----RDVLFIDEIH----RLSIIVEE 123
            + REL  N    +  +   A D   +    E      R V++ ++I+    R     + 
Sbjct: 60  ALCRELFGNDEFRNRTLELNASDERGINVVREKIKTWTRQVVYSNKINPITGRKIPPWKV 119

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           ++    E    D    +    R ++ +      +     +  +  PL  R     R    
Sbjct: 120 VILDEAEMMTSD---AQSALRRIIETSAKNTRFVIICNYINKIIEPLASRCA-KFRFQPI 175

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             +  +  +    +   +    E    +   S+G  R A  +L+
Sbjct: 176 SFKAQRERLNFICQQENIICEPEVFDILVDLSQGDLRRAITILQ 219


>gi|91095205|ref|XP_967947.1| PREDICTED: similar to replication factor C subunit 2 [Tribolium
           castaneum]
          Length = 344

 Score = 63.6 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 80/231 (34%), Gaps = 38/231 (16%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
             +     I   RP+T +E  G  +  + L V      A+   L +++  GPPG+GKTT 
Sbjct: 21  QKADNLPWIEKYRPQTFQEIVGNEDTTNRLSVI-----AKQGNLPNLIIAGPPGVGKTTT 75

Query: 71  AQVVAR------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIHR 116
              +AR            EL  +       V  K    A     L      ++ +DE+  
Sbjct: 76  ILCLARILLGPAFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIIILDEVDS 135

Query: 117 LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
           ++   ++ L   ME +                 N +RF    A      +   +Q R  I
Sbjct: 136 MTEGAQQALRRTMEIYS----------------NTTRF--ALACNYSEKVIEAIQSRCAI 177

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
                  + + L  ++Q   +   +  T +    I   ++G  R A   L+
Sbjct: 178 LRYSRLTDAQVLARVIQ-VCQQESVEYTQDGLEAIVFTAQGDMRQALNNLQ 227


>gi|312136660|ref|YP_004003997.1| ATPase AAA [Methanothermus fervidus DSM 2088]
 gi|311224379|gb|ADP77235.1| AAA ATPase [Methanothermus fervidus DSM 2088]
          Length = 405

 Score = 63.6 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 42/240 (17%), Positives = 82/240 (34%), Gaps = 33/240 (13%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA-- 75
            +   RP+  +EF G  +    ++ +I   K   +    +L VGP G+GKT LAQ+++  
Sbjct: 3   WVEKYRPKDFDEFIGNRKVVEEVRKWIRDWKE-GKPQPPLLLVGPTGVGKTALAQIISNK 61

Query: 76  -------RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
                          S    ++ ++    +L    E   V+ +DE+  +          +
Sbjct: 62  FSDSISLNASDKRSYSILMRIVGESSKSGSLFGKHER--VIVLDEVDNIH---------S 110

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +ED       G     + + I+      + A          ++ +  +           +
Sbjct: 111 IEDRG-----GASAILKIIDISKHPIV-LTANDIYTRHLARIRKKCKVLKLRRP-PARSI 163

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             ++ R  +   +        EIA ++ G  R A  +L      A     K I  E  D 
Sbjct: 164 VALLGRICRKEKIKFNRSVLMEIAKKASGDVRQAINMLE-----AIARGEKEIKPEYLDY 218


>gi|260769015|ref|ZP_05877949.1| DNA polymerase III subunits gamma and tau [Vibrio furnissii CIP
           102972]
 gi|260617045|gb|EEX42230.1| DNA polymerase III subunits gamma and tau [Vibrio furnissii CIP
           102972]
          Length = 692

 Score = 63.6 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 53/251 (21%), Positives = 89/251 (35%), Gaps = 29/251 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP    E  GQ    + L    E A A+       LF G  G+GKTT+ ++ A+ L    
Sbjct: 11  RPTKFNEVVGQAHVLTAL----ENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCET 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILY------PAMEDFQL 134
             T+ P     G+ A      + R  D+L ID   R  +     L       PA   F++
Sbjct: 67  GITATP----CGECATCKEIDQGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRFKV 122

Query: 135 DLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            L+               ++++        + ATT    L   +  R  +   L    +E
Sbjct: 123 YLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRC-LQFHLKPISVE 181

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +++  +        +   ++A   IA  + G+ R A  L     D A       +  ++ 
Sbjct: 182 NIQHQLAHILAAEQVNSDNKALAMIAHAADGSMRDALSL----TDQAIALGNGQVQPDVV 237

Query: 247 DAALLRLAIDK 257
              L  L  D+
Sbjct: 238 SHMLGTLDTDQ 248


>gi|15920392|ref|NP_376061.1| hypothetical protein ST0209 [Sulfolobus tokodaii str. 7]
 gi|15621174|dbj|BAB65170.1| 689aa long hypothetical SAV protein [Sulfolobus tokodaii str. 7]
          Length = 689

 Score = 63.6 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 68/354 (19%), Positives = 124/354 (35%), Gaps = 55/354 (15%)

Query: 9   SRNVSQEDADISLLRPR-TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLF 59
           S  +S++ A+ +   PR T E+  G       ++  +E      E            +L 
Sbjct: 93  SITISEKPAEQARY-PRVTYEDIGGMKHIIQKIRELVELPLKHPELFKRLGIEPPKGILL 151

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFI 111
            GPPG+GKT LA+ VA E    F S +GP I           L  +  + +     ++FI
Sbjct: 152 YGPPGVGKTLLAKAVANETEAYFTSINGPEIMSKFYGESEQRLREIFEDAKKHAPAIIFI 211

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DEI  ++   +E++          L+            +     +IAAT R   +   L+
Sbjct: 212 DEIDAIAPKRDEVIGEVERRVVAQLLT-----LMDGLESRGNVIVIAATNRPNAVDPALR 266

Query: 172 D--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
              RF   I +   + +    I+Q   +   L+   +      M    T      L+R  
Sbjct: 267 RPGRFDREIEIPLPDKQGRLEILQIHTRNMPLSKDVDLEKLAEMTHGYTGADLSALVREA 326

Query: 230 RDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGL 289
              A       + R +    L +  I     +++++     +       P G+  I   +
Sbjct: 327 AMNA-------LRRYLQVIDLNQDKIPPEILEKMEVNMDDFLKAFKEIVPSGLREIYVEV 379

Query: 290 SE----PRDAIEDLIEPYMIQQGFIQRTPRGRLLM------PIAWQHLGIDIPH 333
            E        +ED+ E               R ++        A++++GI+ P 
Sbjct: 380 PEVHWSDIGGLEDVKEEL-------------REVVEYPLKYREAYENVGIEPPK 420



 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 53/239 (22%), Positives = 84/239 (35%), Gaps = 23/239 (9%)

Query: 28  EEFTGQVEACSNLK-------VFIEAAKARA-EALDHVLFVGPPGLGKTTLAQVVARELG 79
            +  G  +    L+        + EA +    E    +L  GPPG GKT LA+ VA E G
Sbjct: 385 SDIGGLEDVKEELREVVEYPLKYREAYENVGIEPPKGILLFGPPGTGKTMLAKAVATESG 444

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAMED 131
            NF +  GP I           +  +          V+F DEI  ++ +         + 
Sbjct: 445 ANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPTVIFFDEIDAIAPMR----GLTTDS 500

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
              + +V +  +       L    +IAAT R  +L   L    RF   I +   +     
Sbjct: 501 GVTERIVNQLLAEMDGIEKLENVVIIAATNRPDILDPALLRPGRFDRLIYVPPPDKRARA 560

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
            I++   +   LA  D    E+A ++ G        L R      +    T   + AD 
Sbjct: 561 EILKVHTRNVPLA-EDITLDELAEKTEGYTGADLAALVREATLRAIREEMTECMKKADE 618


>gi|307110140|gb|EFN58376.1| hypothetical protein CHLNCDRAFT_59565 [Chlorella variabilis]
          Length = 340

 Score = 63.6 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 57/311 (18%), Positives = 104/311 (33%), Gaps = 42/311 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP  +++  G VEA S L++  E        + +++  GPPG GKTT    +A 
Sbjct: 23  PWVEKYRPTRIKDIVGNVEAVSRLQIIAEEG-----NMPNIILAGPPGTGKTTSILCLAH 77

Query: 77  ------------ELGVNFRSTSGPVIAKAGDLA--ALLTNLEDRDVLFIDEIHRLSIIVE 122
                       EL  +       V  K    A   +   L    ++ +DE   ++   +
Sbjct: 78  ELLGPNFREAVLELNASDDRGIDVVRNKIKMFAQQKVTLPLGRHKIVILDEADSMTSGAQ 137

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           + L   ME +                   S      A  +   +  P+Q R  I      
Sbjct: 138 QALRRTMEIYS------------------STTRFALACNQSSKIIEPIQSRCAIVRYSKL 179

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD-FAEVAHAKTI 241
            + E L+ ++    +  G+A T +    +   + G  R A   ++   + F  V+     
Sbjct: 180 SDKELLQRLLH-VCQEEGVAHTPDGLEAVVFTADGDMRQALNNVQATANGFGLVSQDHVF 238

Query: 242 TREIADAALLRLAIDKMGFD-QLDLRY--LTMIARNFGGGPVGIETISAGLSEPRDAIED 298
                   +L  ++ +   D ++D  Y  L  +          I  +   +       E 
Sbjct: 239 RVCDQPHPVLVSSVVRHCLDARIDDAYEGLRALCDMGYSASDIITILFRVVRNFTGMNEY 298

Query: 299 LIEPYMIQQGF 309
           L   Y+ Q GF
Sbjct: 299 LKLEYIKQIGF 309


>gi|291452794|ref|ZP_06592184.1| DNA polymerase III, subunits gamma and tau [Streptomyces albus
           J1074]
 gi|291355743|gb|EFE82645.1| DNA polymerase III, subunits gamma and tau [Streptomyces albus
           J1074]
          Length = 416

 Score = 63.6 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 58/173 (33%), Gaps = 22/173 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP +  E  GQ      L+  +   +         LF GP G GKTT A+++AR
Sbjct: 15  ALYRRYRPESFAEVIGQEHVTDPLQQALRNNRVNHAY----LFSGPRGCGKTTSARILAR 70

Query: 77  ELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFIDEIHRLSII------VEEILYPA 128
            L      T  P        DLA         DV+ ID      +        +    PA
Sbjct: 71  CLNCEQGPTPDPCGTCQSCQDLA--RNGPGSIDVIEIDAASHGGVDDARDLREKAFFGPA 128

Query: 129 MEDFQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
              +++ ++         G     + V+        I ATT    +   ++ R
Sbjct: 129 SSRYKIYIIDEAHMVTSAGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSR 181


>gi|282599150|ref|YP_003359067.1| gp44 clamp-loader subunit [Deftia phage phiW-14]
 gi|257219220|gb|ACV50235.1| gp44 clamp-loader subunit [Deftia phage phiW-14]
          Length = 327

 Score = 63.6 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 42/284 (14%), Positives = 83/284 (29%), Gaps = 50/284 (17%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP-PGL 65
           ++  +   E       RP  L+         + L  ++E  +     +  + F  P PG 
Sbjct: 9   VMVPDFPLEHVWYQRWRPSNLDNVVLPAGFKTKLLSYVENGR-----IPSLCFYSPSPGT 63

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------EDRDVLFIDEIHRL 117
           GKTT A  +   LG+     +  +      +   +               V+ +DE  RL
Sbjct: 64  GKTTAAWALCNYLGIRPLFINASMNNDVETIRTRVLEYATTMSLVGGGFKVVILDEGERL 123

Query: 118 SIIVEEIL--YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
           S   ++ L             ++      + V+  LSR   +        +         
Sbjct: 124 SSTAQDSLKGLMEQVSKHCSFIITTNSKTKIVEPLLSRCDQVDFIYNSDEM--------- 174

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
                    IE    IV+R   +                + G P     L+  V+D A  
Sbjct: 175 ---------IEINSQIVRRAMGILE--------------AEGVPYDLNSLVDLVKDCA-- 209

Query: 236 AHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGP 279
              + +   +   A     I+     ++D   ++ +  +     
Sbjct: 210 PDNRKVLVRLQSLAGQYGEINNAALQRMDSSMVSTLVESLKRKD 253


>gi|254520640|ref|ZP_05132696.1| ATP-dependent metalloprotease FtsH [Clostridium sp. 7_2_43FAA]
 gi|226914389|gb|EEH99590.1| ATP-dependent metalloprotease FtsH [Clostridium sp. 7_2_43FAA]
          Length = 638

 Score = 63.6 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 72/283 (25%), Positives = 113/283 (39%), Gaps = 27/283 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIE----AAK---ARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ EA  +LK  I+    A+K     A+     L VGPPG GKT LA+ VA E 
Sbjct: 170 TFDDVAGQDEAKESLKEIIDYLNNASKYTEIGAKLPKGALLVGPPGTGKTLLAKAVAGEA 229

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG           A  +  L    E     ++FIDE+  +    +  L    E
Sbjct: 230 NVPFLSISGSNFVEMFAGMGAAKVRDLFQEAEKNAPCIIFIDEVDSIGKSRDSQLQTNDE 289

Query: 131 -DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            +  L+ ++ +     S K       ++AAT R  +L   L    RF   + ++  +++ 
Sbjct: 290 REQTLNQLLTQMDGFDSTKA----IVVLAATNRPEILDKALLRPGRFDRRVIVDRPDLKG 345

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
              I++  +K   L   D    EIA   + TP   G  L  + + A +   K     +  
Sbjct: 346 RIDILKVHSKGVKL-GDDVNLEEIA---KSTPGAVGADLANIVNEAALRAVKHGREFVMQ 401

Query: 248 AAL-LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGL 289
             L   + +   G ++ D     M  R      VG   ++A L
Sbjct: 402 EDLREAVEVIIAGKEKKDRILSPMEKRVVAFHEVGHALVAALL 444


>gi|145477489|ref|XP_001424767.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124391833|emb|CAK57369.1| unnamed protein product [Paramecium tetraurelia]
          Length = 351

 Score = 63.6 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 66/207 (31%), Gaps = 29/207 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP  +E+   Q E   +L+  ++        L H+L  GPPG GKT+    +A+
Sbjct: 28  PWVEKYRPNKIEDLAYQEEVVQSLQGVLKTG-----NLPHLLLHGPPGTGKTSTIIALAK 82

Query: 77  -------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD--------VLFIDEIH 115
                        EL  +       V  K    A  +               ++ +DE  
Sbjct: 83  QLFGPDFWRQRVLELNASDDRGINVVRNKVKKFAEQIVAKNPNPGFLCPSYKIIILDEAD 142

Query: 116 RLSIIVEEILYPAMEDFQLD--LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
            ++   +  L   +ED+       +      + ++  +SR       +         + +
Sbjct: 143 SMTNDAQSALRRIIEDYATTTRFCIICNYITKIIEPLVSRCVKYRFKSIPEN-EQIERLK 201

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTG 200
           F        Y ++ LK +V        
Sbjct: 202 FVADSESVTYNLDALKQLVVVSGGDLR 228


>gi|212711281|ref|ZP_03319409.1| hypothetical protein PROVALCAL_02353 [Providencia alcalifaciens DSM
           30120]
 gi|212686010|gb|EEB45538.1| hypothetical protein PROVALCAL_02353 [Providencia alcalifaciens DSM
           30120]
          Length = 648

 Score = 63.6 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 62/309 (20%), Positives = 105/309 (33%), Gaps = 37/309 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+   +  GQ    + L     A     + L H  LF G  G+GKTT+A++ A+ L   
Sbjct: 11  RPQKFSDVVGQQHVLTAL-----ANGLEHQRLHHAYLFSGTRGVGKTTIARLFAKGLNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILY------PAMEDFQ 133
              T+ P     G  A  L   + R  D++ ID   R  +     L       PA   F+
Sbjct: 66  TGITATP----CGKCANCLEIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFK 121

Query: 134 LDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           + L+               ++++        + ATT    L   +  R  +   L   ++
Sbjct: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDV 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
             +   ++       +     A   IA  + G+ R A  L     D A       +T +I
Sbjct: 181 AQISEQLELILNAENIEHDTRARQLIARAADGSLRDALSL----TDQAIAMGQGKVTADI 236

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
               L  L       D+  L  +  + R  G   +     +A      + +   I   + 
Sbjct: 237 VSQMLGTLD------DEQPLAIIEALIRAEGAAVMSQVEQAASRGADWENLLVEILSLLH 290

Query: 306 QQGFIQRTP 314
           +   IQ  P
Sbjct: 291 RIAMIQLLP 299


>gi|89073484|ref|ZP_01160007.1| DNA polymerase III subunits gamma and tau [Photobacterium sp.
           SKA34]
 gi|89050748|gb|EAR56229.1| DNA polymerase III subunits gamma and tau [Photobacterium sp.
           SKA34]
          Length = 737

 Score = 63.6 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 51/266 (19%), Positives = 82/266 (30%), Gaps = 59/266 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP    +  GQ    + L   +         L H  LF G  G+GKTT+A++ A+ L   
Sbjct: 11  RPSQFSDVVGQSHVLTALGNALT-----QNRLHHAYLFSGTRGVGKTTIARIFAKGLNCE 65

Query: 82  ------------------------FRSTSGPVIAKAGDLAALLTNLEDRD------VLFI 111
                                             K  D   LL N++ +       V  I
Sbjct: 66  EGITATPCGKCATCREIDEGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         I ATT    L   + 
Sbjct: 126 DEVHMLSRHSFNALLKTLEE------------------PPEYVKFILATTDPQKLPVTIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L   + + ++T +++      +    +A   +A  + G+ R A  L     D
Sbjct: 168 SRC-LQFHLKHLDHQQIQTQLEKVLTEEKVEYEAKALSLLARAAEGSMRDALSL----TD 222

Query: 232 FAEVAHAKTITREIADAALLRLAIDK 257
            A       +  +     L  L  D+
Sbjct: 223 QAIALGNGQVGIDNVATMLGTLDTDQ 248


>gi|322513952|ref|ZP_08067027.1| DNA polymerase III, gamma/tau subunit DnaX [Actinobacillus ureae
           ATCC 25976]
 gi|322120178|gb|EFX92136.1| DNA polymerase III, gamma/tau subunit DnaX [Actinobacillus ureae
           ATCC 25976]
          Length = 467

 Score = 63.6 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 50/266 (18%), Positives = 84/266 (31%), Gaps = 59/266 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+   E  GQ    S L+  +   +     L H  LF G  G+GKT++A++ A+ L   
Sbjct: 11  RPQRFSEVVGQQHVLSALENGLREGR-----LHHAYLFSGTRGVGKTSIARLFAKGLNCE 65

Query: 82  F------------------------RSTSGPVIAKAGDLAALLTNLEDRD------VLFI 111
                                             K  D   LL N++ +       V  I
Sbjct: 66  TGITATPCGECANCKAIEEGRFIDLIEIDAASRTKVEDTRELLDNVQYKPTVGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSRHSFNALLKTLEE------------------PPEYVKFLLATTDPQKLPITIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L   +   +   ++   +   +     A  ++A  ++G+ R +  L     D
Sbjct: 168 SRC-MQFHLRALDQVQIANHLEFILQQENIPYESAAMEKLAKAAQGSIRDSLSL----TD 222

Query: 232 FAEVAHAKTITREIADAALLRLAIDK 257
            A V     I+  I    L  +   +
Sbjct: 223 QAIVVSNANISLPIVQQMLGLIDDHQ 248


>gi|194892122|ref|XP_001977600.1| GG18160 [Drosophila erecta]
 gi|190649249|gb|EDV46527.1| GG18160 [Drosophila erecta]
          Length = 353

 Score = 63.6 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 56/319 (17%), Positives = 104/319 (32%), Gaps = 41/319 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RPR +++   Q E  + L+  +E        L ++L  GPPG GKT+     +R
Sbjct: 31  PWVEKYRPRNVDDVVEQSEVVAVLRKCVE-----GGDLPNMLLYGPPGTGKTSTILAASR 85

Query: 77  ------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD--------VLFIDEIHR 116
                       EL  +       V  K  + + L  +    D        ++ +DE   
Sbjct: 86  QIFGDMFKDRILELNASDERGINVVRTKIKNFSQLSASSVRPDGKPCPPFKIIILDEADS 145

Query: 117 LSIIVEEILYPAM--EDFQLDLMVGEGPSARSVKINLSRFTLIAATTR-VGLLTNPLQDR 173
           ++   +  L   M  E       +     +R +    SR +           + + L+  
Sbjct: 146 MTHAAQSALRRTMEKESRSTRFCLICNYVSRIIVPITSRCSKFRFKALGEDKVIDRLKYI 205

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR----- 228
            G+       E +  K+IV+        A+T   +C        T   A  L        
Sbjct: 206 CGLEGVK--IEEDAYKSIVKISGGDLRRAITTLQSCYRLKGPEHTINTA-DLFEMSGVIP 262

Query: 229 ---VRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETI 285
              + D+ EV  +     E  +  +  +        Q+  +++  I  + G       TI
Sbjct: 263 EYYLEDYLEVCRSG--NYERLEQFVREIGFSAYSVGQMMEQFVEFIVHHPGLNDPQKATI 320

Query: 286 SAGLSEPRDAIEDLIEPYM 304
              L E    ++D    Y+
Sbjct: 321 CDKLGECCFRLQDGGSEYL 339


>gi|323499527|ref|ZP_08104497.1| DNA polymerase III subunits gamma and tau [Vibrio sinaloensis DSM
           21326]
 gi|323315400|gb|EGA68441.1| DNA polymerase III subunits gamma and tau [Vibrio sinaloensis DSM
           21326]
          Length = 710

 Score = 63.6 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 52/265 (19%), Positives = 78/265 (29%), Gaps = 57/265 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP    E  GQ    + L    E A A+       LF G  G+GKTT+ ++ A+ L    
Sbjct: 11  RPTKFNEVVGQSHVLTAL----ENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCET 66

Query: 83  ------------------------RSTSGPVIAKAGDLAALLTNLEDRD------VLFID 112
                                            K  D   LL N++ +       V  ID
Sbjct: 67  GITATPCGQCDTCKEIDEGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRFKVYLID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS      L   +E+                         + ATT    L   +  
Sbjct: 127 EVHMLSRHSFNALLKTLEE------------------PPEYVKFLLATTDPQKLPVTILS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R  +   L    ++ +   +        +     A   IA  + G+ R A  L     D 
Sbjct: 169 RC-LQFHLKPITVDTIHEQLDHILGHEAVTSEPRALGMIAHAADGSMRDALSL----TDQ 223

Query: 233 AEVAHAKTITREIADAALLRLAIDK 257
           A      ++  E     L  L  D+
Sbjct: 224 AIALGNGSVMAESVAHMLGTLDTDQ 248


>gi|315078844|gb|EFT50866.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL053PA2]
          Length = 948

 Score = 63.6 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 47/237 (19%), Positives = 74/237 (31%), Gaps = 23/237 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T +E  G+      LK  I   +         LF GP G GKTT A+++AR
Sbjct: 100 ALYRRYRPETFDEVIGEDHVIEPLKRAILNNRVNHAY----LFSGPRGCGKTTTARILAR 155

Query: 77  ELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAM 129
            L      T  P        DLA         DV+ ID      +     + E   +  +
Sbjct: 156 ALNCEQGPTPTPCGTCQSCRDLAC--GGPGSIDVIEIDAASHGGVDDARDLRERAFFAPV 213

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                  ++ E             + V+        I ATT    +   ++ R       
Sbjct: 214 HSRYKIYIIDEAHMVTPQGFNALLKLVEEPPPHVKFIFATTEPEKVIGTIRSR-THHYPF 272

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                + L   +       G+ V       +     G+ R +  +L ++   A   H
Sbjct: 273 RLVPPKVLVDYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVLDQLLGGAADGH 329


>gi|255727949|ref|XP_002548900.1| ribosome biogenesis ATPase RIX7 [Candida tropicalis MYA-3404]
 gi|240133216|gb|EER32772.1| ribosome biogenesis ATPase RIX7 [Candida tropicalis MYA-3404]
          Length = 825

 Score = 63.6 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 56/224 (25%), Positives = 85/224 (37%), Gaps = 15/224 (6%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLED 105
           E    VL  GPPG GKTTLA  +A EL V F + S P I           L  L    + 
Sbjct: 225 EPPRGVLLYGPPGCGKTTLANALAGELKVPFFNISAPSIVSGMSGESEKKLRDLFEEAKS 284

Query: 106 RD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
               ++F+DEI  ++   +      ME   +  ++         K       +I AT R 
Sbjct: 285 VAPCLIFMDEIDAITPKRDGGAQREMERRIVAQLLTLMDELTLEKTGGKPVVVIGATNRP 344

Query: 164 GLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRI 221
             L + L+   RF   I L     E   +I++  A    + +      +    S+ TP  
Sbjct: 345 DSLDSALRRAGRFDREICLTVPNEEQRISILK--AMTKNIKLESGENFDYRELSKLTPGY 402

Query: 222 AGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDL 265
            G  L+ +   A +   K I  E    A    ++ K   D +D+
Sbjct: 403 VGADLKSLVTAAGITAIKRIF-ETMSEAQEESSVQK--DDSMDI 443



 Score = 52.0 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 72/226 (31%), Gaps = 16/226 (7%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLT 101
           K    A   VL  GPPG GKT LA+ VA E   NF S  GP +           +  +  
Sbjct: 550 KVGIAAPAGVLMWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESERAVRQVFQ 609

Query: 102 NLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA 159
                   ++F DE+  L    +  +  +       L+            +     +I A
Sbjct: 610 RARASTPCIIFFDELDALVPRRDNSMSESSSRVVNTLLTELDGLN-----DRKGVFVIGA 664

Query: 160 TTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVT-DEAACEIAMRSR 216
           T R  ++   +    R    + +     E+   I++   +     +  D +   ++   R
Sbjct: 665 TNRPDMIDPAMLRPGRLDKTLYIELPSPEERLEILKTIVRSNNSPLHSDVSLVSVSQDPR 724

Query: 217 GTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQ 262
                   L   V++    A  K          L +    +   D+
Sbjct: 725 CRNFSGADLSSLVKEAGVSALKKKFFTNQKIQDLDKSGFYQESSDE 770


>gi|225026633|ref|ZP_03715825.1| hypothetical protein EUBHAL_00884 [Eubacterium hallii DSM 3353]
 gi|224956003|gb|EEG37212.1| hypothetical protein EUBHAL_00884 [Eubacterium hallii DSM 3353]
          Length = 571

 Score = 63.6 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 77/224 (34%), Gaps = 21/224 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP   +E  GQ      L+  I             LF G  G GKT++A++ A+ +    
Sbjct: 11  RPSDFDEVKGQDAIVQTLRNQI----IYNRIGHAYLFCGTRGTGKTSIAKLFAKAVNCEH 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P  A        + N    DVL ID      +  +  I E++ Y  +E      +
Sbjct: 67  PVNGNPCNACPS--CQAINNQSSLDVLEIDAASNNGVENIRDIREQVQYSPVEGRYKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++   S    I ATT    +   +  R           ++ +
Sbjct: 125 IDEVHMLSSGAFNALLKTLEEPPSYVIFILATTEKHKIPVTILSRCQKYDFKRI-SVDTI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
              +    +   +   ++A   IA  + G+ R A  LL +   F
Sbjct: 184 TNHLVSLMEKEKVDADEKALRYIARAADGSMRDALSLLDQCIAF 227


>gi|56476074|ref|YP_157663.1| DNA polymerase III (subunits tau and gamma) [Aromatoleum aromaticum
           EbN1]
 gi|56312117|emb|CAI06762.1| DNA polymerase III (subunits tau and gamma) [Aromatoleum aromaticum
           EbN1]
          Length = 659

 Score = 63.6 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 49/269 (18%), Positives = 83/269 (30%), Gaps = 63/269 (23%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+      GQ      L   +   +     L H  LF G  G+GKTT+++++A+ L   
Sbjct: 11  RPKNFATLVGQEHVVRALSHALATGR-----LHHAWLFTGTRGVGKTTISRILAKALNCE 65

Query: 82  ------------------------FRSTSGPVIAKAGDLAALLTNL------EDRDVLFI 111
                                   +            D+AALL             V  I
Sbjct: 66  TGVTPEPCGTCAACRAIDADRFPDYVEMDAASNRGVEDMAALLDKAVYAPVQGRYKVYMI 125

Query: 112 DEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+H L+      +   +E+    +  ++      +     LSR                
Sbjct: 126 DEVHMLTGHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQ------------- 172

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
               F +      + I+ L  I++      G+     A   +A  + G+ R A  LL   
Sbjct: 173 ----FNLKQMPPGHIIDHLGGILE----AEGVPFEAPALRHLAKAANGSMRDALSLL--- 221

Query: 230 RDFAEVAHAKTITREIADAALLRLAIDKM 258
            D A    +  +  E     L  +  D +
Sbjct: 222 -DQAIAHGSGRVEEEQVSHMLGTVGDDHL 249


>gi|282853259|ref|ZP_06262596.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           J139]
 gi|282582712|gb|EFB88092.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           J139]
 gi|313793235|gb|EFS41302.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL110PA1]
 gi|313802801|gb|EFS44017.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL110PA2]
 gi|314964646|gb|EFT08746.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL082PA1]
 gi|314982793|gb|EFT26885.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL110PA3]
 gi|315091446|gb|EFT63422.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL110PA4]
 gi|315105106|gb|EFT77082.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL050PA2]
 gi|327457184|gb|EGF03839.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL092PA1]
          Length = 948

 Score = 63.6 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 47/237 (19%), Positives = 74/237 (31%), Gaps = 23/237 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T +E  G+      LK  I   +         LF GP G GKTT A+++AR
Sbjct: 100 ALYRRYRPETFDEVIGEDHVIEPLKRAILNNRVNHAY----LFSGPRGCGKTTTARILAR 155

Query: 77  ELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAM 129
            L      T  P        DLA         DV+ ID      +     + E   +  +
Sbjct: 156 ALNCEQGPTPTPCGTCQSCRDLAC--GGPGSIDVIEIDAASHGGVDDARDLRERAFFAPV 213

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                  ++ E             + V+        I ATT    +   ++ R       
Sbjct: 214 HSRYKIYIIDEAHMVTPQGFNALLKLVEEPPPHVKFIFATTEPEKVIGTIRSR-THHYPF 272

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                + L   +       G+ V       +     G+ R +  +L ++   A   H
Sbjct: 273 RLVPPKVLVDYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVLDQLLGGAADGH 329


>gi|268325655|emb|CBH39243.1| conserved hypothetical protein, similar to replication factor C
           small subunit [uncultured archaeon]
 gi|268326125|emb|CBH39713.1| conserved hypothetical protein, similar to replication factor C,
           small subunit [uncultured archaeon]
 gi|268326285|emb|CBH39873.1| conserved hypothetical protein, similar to replication factor C
           small subunit [uncultured archaeon]
          Length = 345

 Score = 63.6 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 44/256 (17%), Positives = 91/256 (35%), Gaps = 21/256 (8%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
                RP+ L E  G VE    L  F+       + + ++L  GP G GKT+L   +A E
Sbjct: 5   WTEKYRPKRLHEILGHVEVVKRLNGFV-----MEKTIPNLLLWGPKGTGKTSLVYALANE 59

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDE----IHRLSIIVEEI--------- 124
              +  +          +        + R   F DE    I+    +++E          
Sbjct: 60  FYGDDENLLRIECRDFIEQRKKWLKADKRFKFFYDEQKSAINIFKAMIKEYASLSPLNAP 119

Query: 125 --LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             L        L + + +G   R ++ +      I +TT+   +   ++ R       + 
Sbjct: 120 FKLLFFSNADYLPVYLQQGLR-RVMEQSSKTCRFIFSTTKATSVIPAIRSRCLNFRFPSL 178

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            E +   T+++  +   GL +T+     ++  ++G   +A  LL      ++      + 
Sbjct: 179 AESDAFGTLIRLISDAEGLKITEGGLKALSGYAKGDAGVAINLLEAAATNSDTIDEDGLE 238

Query: 243 REIADAALLRLAIDKM 258
               +A   R   +++
Sbjct: 239 VVAENAFFQRRTAEEL 254


>gi|152993623|ref|YP_001359344.1| DNA polymerase III, gamma/tau subunits [Sulfurovum sp. NBC37-1]
 gi|151425484|dbj|BAF72987.1| DNA polymerase III, gamma/tau subunits [Sulfurovum sp. NBC37-1]
          Length = 666

 Score = 63.6 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 68/217 (31%), Gaps = 39/217 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     RP T ++  GQ      L + ++        L H  LF G  G GKT+ A++ A
Sbjct: 4   ALARKYRPATFDDLIGQDSVSQTLSLALD-----GNRLSHAYLFSGLRGSGKTSTARIFA 58

Query: 76  RE------------------------LGVNFRSTSGPVIAKAGDLAALLTNLEDRD---- 107
           +                           ++             D+  L+ + + +     
Sbjct: 59  KALLCEQGTTSHPCGTCTHCVMAAENRHMDIIEMDAASNRGIDDIKDLIEHTKYKPSSAR 118

Query: 108 --VLFIDEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
             +  IDE+H L+      L   +E+    +  ++      +     LSR          
Sbjct: 119 YKIFIIDEVHMLTTQAFNALLKTLEEPPDFVKFILATTDPLKLPATILSRTQHFRFKKIP 178

Query: 164 GLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
             L     +   + +    YE E L+ I + GA    
Sbjct: 179 QNLVLSHLEHI-MNLEKIEYEKEALEIIARSGAGSLR 214


>gi|325962021|ref|YP_004239927.1| DNA polymerase III subunit gamma/tau [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323468108|gb|ADX71793.1| DNA polymerase III, subunit gamma/tau [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 1208

 Score = 63.6 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 69/235 (29%), Gaps = 19/235 (8%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP +  +  GQ      L   +   +         LF GP G GKTT A+++AR
Sbjct: 16  ALYRRYRPDSFADVIGQEHVTGPLMTALRKNRVNHAY----LFSGPRGCGKTTSARILAR 71

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL-----YPAMED 131
            L      T  P       +          DV+ ID      +     L     Y  + D
Sbjct: 72  CLNCAQGPTDTPCGTCPSCIELARGGSGSLDVIEIDAASHGGVDDARDLRERATYAPVRD 131

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             + V+        I ATT    +   ++ R         
Sbjct: 132 RYKIFIIDEAHMVTSAGFNALLKIVEEPPEHIKFIFATTEPDKVIGTIRSR-THHYPFRL 190

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
              E L   ++       + V       +     G+ R +  +L ++   A    
Sbjct: 191 VPPEPLMAYLELLCNQENVPVAPGVLSLVIRAGGGSVRDSLSVLDQLMAGAGPNG 245


>gi|154505547|ref|ZP_02042285.1| hypothetical protein RUMGNA_03084 [Ruminococcus gnavus ATCC 29149]
 gi|153794205|gb|EDN76625.1| hypothetical protein RUMGNA_03084 [Ruminococcus gnavus ATCC 29149]
          Length = 522

 Score = 63.6 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 82/230 (35%), Gaps = 21/230 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP   E+  GQ    + LK  IEA +         LF G  G GKTT+A++ A+
Sbjct: 5   ALYRKFRPVEFEDVKGQEHIITTLKNQIEANRIGHAY----LFCGTRGTGKTTVAKIFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +         P   +     ++        V+ ID      +  +  I EE+ Y   E 
Sbjct: 61  AVNCEHPVNGSP-CGECAMCRSIAAGTSMN-VIEIDAASNNGVDNIREIREEVAYRPTEG 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT V  +   +  R         
Sbjct: 119 KYKVYIIDEVHMLSIGAFNALLKTLEEPPEYVIFILATTEVHKIPITILSRCQHYDFKRI 178

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
             IE +   ++   +   + V ++A   +A  + G+ R A  LL +   F
Sbjct: 179 -SIETITDRMRDLMQEEQVEVEEKALRYVAKAADGSMRDALSLLDQCIAF 227


>gi|145633311|ref|ZP_01789042.1| DNA polymerase III subunits gamma and tau [Haemophilus influenzae
           3655]
 gi|144986157|gb|EDJ92747.1| DNA polymerase III subunits gamma and tau [Haemophilus influenzae
           3655]
          Length = 688

 Score = 63.6 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 50/282 (17%), Positives = 88/282 (31%), Gaps = 65/282 (23%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T  +  GQ    + L     A   +   L H  LF G  G+GKT++A++ A+ L   
Sbjct: 11  RPKTFADVVGQEHIITAL-----ANGLKDNRLHHAYLFSGTRGVGKTSIARLFAKGLNCV 65

Query: 82  F------------------------RSTSGPVIAKAGDLAALLTNLEDRDVL------FI 111
                                             +  D   LL N++ + V+       I
Sbjct: 66  HGVTATPCGECENCKAIEQGNFIDLIEIDAASRTRVEDTRELLDNVQYKPVVGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSRHSFNALLKTLEE------------------PPEYVKFLLATTDPQKLPVTIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L   +   +   +        +   + A  ++A  ++G+ R +  L     D
Sbjct: 168 SRC-LQFHLKALDETQISQHLAHILTQENIPFEEPALVKLAKAAQGSIRDSLSL----TD 222

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIAR 273
            A     + +T  +    L  L       D   +  L  + +
Sbjct: 223 QAIAMGDRQVTNNVVSNMLGLLD------DNYSVDILYALHQ 258


>gi|261403322|ref|YP_003247546.1| AAA family ATPase, CDC48 subfamily [Methanocaldococcus vulcanius
           M7]
 gi|261370315|gb|ACX73064.1| AAA family ATPase, CDC48 subfamily [Methanocaldococcus vulcanius
           M7]
          Length = 903

 Score = 63.6 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 59/283 (20%), Positives = 90/283 (31%), Gaps = 37/283 (13%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARELG 79
           E+  G  +    L+  +E      E            VL  GPPG GKT LA+ VA E G
Sbjct: 452 EDIGGLEDVKQELREAVEWPLKAKEVFEKIGVRPPKGVLLFGPPGTGKTLLAKAVANESG 511

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMED 131
            NF S  GP I           +  +          ++F DEI  ++      L  A+ D
Sbjct: 512 ANFISVKGPEIFSKWVGESEKAIREIFRKARQSAPCIIFFDEIDAIAPKRGRDLSSAVTD 571

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
             ++ ++ E       K       +IAAT R  ++ + L    R    I +   + +   
Sbjct: 572 KVVNQLLTELDGMEEPK----DVIVIAATNRPDIIDSALLRPGRLDRVILVPVPDEKARL 627

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT-ITREIADA 248
            I++   +   L                T      L R     A           E+   
Sbjct: 628 DILKIHTRSMNLDEDVNLEELAKKTEGYTGADIEALCREAAMLAVREGIGKPWEIEVKLR 687

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
            L              + YL  I+  F G  V + +I     E
Sbjct: 688 DL--------------INYLQSISGTFRGAAVELNSIIKATKE 716



 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 52/197 (26%), Positives = 74/197 (37%), Gaps = 23/197 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAA--------KARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           T E+  G  E    ++  IE          K   E    VL VGPPG GKT LA+ VA E
Sbjct: 177 TYEDIGGLKEEVKKVREMIELPMRHPELFEKLGIEPPKGVLLVGPPGTGKTLLAKAVANE 236

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM 129
            G NF   +GP I          +L  +    E+    ++FIDE+  ++   +E      
Sbjct: 237 AGANFYVINGPEIMSKYVGETEENLRKIFEEAEENAPSIIFIDELDAIAPKRDEASGEVE 296

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                 L+               +  +I AT R   L   L+   RF   I +   + E 
Sbjct: 297 RRLVAQLLT-----LMDGLKGRGQVVVIGATNRPNALDPALRRPGRFDREIVIGVPDREG 351

Query: 188 LKTIVQRGAKLTGLAVT 204
            K I+Q   +   LA  
Sbjct: 352 RKEILQIHTRNMPLAED 368


>gi|156553425|ref|XP_001599543.1| PREDICTED: similar to ENSANGP00000009970 [Nasonia vitripennis]
          Length = 284

 Score = 63.6 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 52/157 (33%), Gaps = 21/157 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP  L++     E    +  FI+        L H+L  GPPG GKT+     A+
Sbjct: 13  PWVEKYRPSKLDDLISHEEIIQTINKFID-----ENQLPHLLLYGPPGTGKTSTILACAK 67

Query: 77  ------ELGVNFRSTSGPVIAKAGDLA-ALLTNLEDRD-------VLFIDEIHRLSIIVE 122
                 +        +       G +   +L+             ++ +DE   ++   +
Sbjct: 68  KLYTPQQFNSMVLELNASDDRGIGIVRGQILSFASTGTMYRSGYKLIILDEADAMTNDAQ 127

Query: 123 EILYPAMEDFQ--LDLMVGEGPSARSVKINLSRFTLI 157
             L   +E +   +   +     ++ +    SR T  
Sbjct: 128 NALRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTKF 164


>gi|56417261|ref|YP_154335.1| DNA polymerase III gamma subunit [Anaplasma marginale str. St.
           Maries]
 gi|56388493|gb|AAV87080.1| DNA polymerase III gamma subunit [Anaplasma marginale str. St.
           Maries]
          Length = 474

 Score = 63.6 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 46/240 (19%), Positives = 71/240 (29%), Gaps = 53/240 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV--------- 73
           RPR+ ++  GQ          +  A         +L VG  G+GKTT A++         
Sbjct: 8   RPRSFDDLVGQDVLV----RILRNAFTIGSLSSPILMVGASGVGKTTCARIVSLCLNCVN 63

Query: 74  ---------------VARELGVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFID 112
                          +      +             D+  LL N           V  ID
Sbjct: 64  GPTPDPCGTCHECVSIKNSTNPDVIEMDAASNTGVDDIRVLLENSSYLPTSSRYKVYIID 123

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LSI     L   +ED                         + ATT V  +   +  
Sbjct: 124 EVHMLSISAFNALLKTLEDPA------------------EHVRFVMATTEVRKVPVTVAS 165

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R    + L     + L   +   AK   +    +    IA  + G+ R A  LL +   +
Sbjct: 166 RC-HRLDLFKLTTDQLFAHLVEIAKKEDIEHDGDGLRLIAENASGSVRNALFLLEQSAIY 224


>gi|209545026|ref|YP_002277255.1| DNA polymerase III subunits gamma and tau [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209532703|gb|ACI52640.1| DNA polymerase III, subunits gamma and tau [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 687

 Score = 63.6 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 53/256 (20%), Positives = 87/256 (33%), Gaps = 22/256 (8%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP TL++  GQ          +  A A        +  G  G+GKTT A+++AR L
Sbjct: 61  ARKYRPTTLDDLIGQDSTV----RILRNAFALGRVAHAFMLTGVRGVGKTTTARIIARAL 116

Query: 79  GV-NFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSI------IVEEILYPAM 129
                  T GP     G  A  +  L DR  DVL +D   R  +      I      P  
Sbjct: 117 NCVGPDGTGGPTADPCGVCANCVAILADRHPDVLEMDAASRTGVDDVREIIEATRFRPMQ 176

Query: 130 EDFQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
              ++ ++               ++++   ++ T + ATT +  +   +  R        
Sbjct: 177 GRMKVFIIDEVHMLSRNAFNALLKTLEEPPAQVTFVFATTELRKVPVTVLSRCQRFDLRR 236

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
             + + L     R A+  G   T +A   IA  + G+ R    LL +      V      
Sbjct: 237 VPQSD-LAAHFGRIARAEGAECTPDALALIARAADGSVRDGLSLLDQAIAQGSVEGDGAA 295

Query: 242 TREIADAALLRLAIDK 257
                  A +    D+
Sbjct: 296 PIGAERVADMLGLADR 311


>gi|152002560|dbj|BAF73584.1| ATP-dependent Zn protease [Onion yellows phytoplasma OY-W]
          Length = 422

 Score = 63.6 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 92/244 (37%), Gaps = 19/244 (7%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE-------ALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  E    ++  I+  K   +           VL  GPPG GKT L + +A E+
Sbjct: 178 TFADVAGLEEEKKEIQELIDFLKHPQKYHKMGFAIPKGVLLEGPPGTGKTLLVKALANEV 237

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            + F + SG           A  +  L    +     ++FIDEI  L    +      +E
Sbjct: 238 KIPFYAVSGSEFVEVYVGVGASRIRDLFQKAKRTTPCIIFIDEIDALGAKRKNN--SIIE 295

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
             + D  + +          LS+  +IAAT R+ +L   L    RF   I++N   ++  
Sbjct: 296 SREHDQSLNQLLLEMDGFFKLSQIIIIAATNRIDMLDPALIRPGRFDRKIKINLPNLKAR 355

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           + I++  AK   +++  +      +    +      +L      A   +   I +   + 
Sbjct: 356 EAILKVHAKNKNISLDVDFYKLALITEGASGAQLAAILNDALILAIRNNKDQIDKHFLEQ 415

Query: 249 ALLR 252
           A+ R
Sbjct: 416 AIKR 419


>gi|328474507|gb|EGF45312.1| DNA polymerase III subunits gamma and tau [Vibrio parahaemolyticus
           10329]
          Length = 711

 Score = 63.6 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 51/251 (20%), Positives = 89/251 (35%), Gaps = 29/251 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP   ++  GQ    + L    E A A+       LF G  G+GKT++ ++ A+ L    
Sbjct: 11  RPNKFDQVVGQKHVLTAL----ENALAQNRLHHAYLFSGTRGVGKTSIGRLFAKGLNCET 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILY------PAMEDFQL 134
             T+ P     G+ A      E R  D+L ID   R  +     L       PA   F++
Sbjct: 67  GITATP----CGECATCREIDEGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRFKV 122

Query: 135 DLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            L+               ++++        + ATT    L   +  R  +   L    ++
Sbjct: 123 YLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRC-LQFHLKPISVD 181

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           D+   +        ++   +A   I+  + G+ R A  L     D A       +  +I 
Sbjct: 182 DIHQQLDYILGQEQVSAESKALGMISHAADGSMRDALSL----TDQAIALGNGAVQTDIV 237

Query: 247 DAALLRLAIDK 257
              L  +  D+
Sbjct: 238 SHMLGTIDTDQ 248


>gi|326475565|gb|EGD99574.1| DNA replication factor C subunit Rfc3 [Trichophyton tonsurans CBS
           112818]
 gi|326483166|gb|EGE07176.1| DNA replication factor C subunit Rfc3 [Trichophyton equinum CBS
           127.97]
          Length = 397

 Score = 63.6 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 60/187 (32%), Gaps = 30/187 (16%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
                   +   RP TL++ +G  +  + +  F+++ +     L H+L  GPPG GKT+ 
Sbjct: 40  EAGDNLPWVEKYRPDTLDDVSGHQDIIATINRFVDSNR-----LPHLLLYGPPGTGKTST 94

Query: 71  AQVVAR------ELGVNFRSTSGPVIAKAGDLAALLT-----------------NLEDRD 107
              +AR       +       +         +   +                   L    
Sbjct: 95  ILALARRIYGSKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSTAPSSGSGLGAFK 154

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLD--LMVGEGPSARSVKINLSRFTLIAATTRVGL 165
           ++ +DE   ++   +  L   ME +  +    +    + +     LSR T    +     
Sbjct: 155 LIILDEADAMTSAAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEK 214

Query: 166 LTNPLQD 172
               L D
Sbjct: 215 DIRRLVD 221


>gi|255528022|ref|ZP_05394859.1| recombination factor protein RarA [Clostridium carboxidivorans P7]
 gi|255508291|gb|EET84694.1| recombination factor protein RarA [Clostridium carboxidivorans P7]
          Length = 332

 Score = 63.6 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 41/241 (17%), Positives = 79/241 (32%), Gaps = 51/241 (21%)

Query: 105 DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTR 162
           +  +L+IDEIH  +  +++ L   +E+ Q+ L+    E P     K  LSR         
Sbjct: 4   NGVILYIDEIHHFTKRIQQSLLEFIENGQITLIGSTTENPYFYIFKAILSR--------- 54

Query: 163 VGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG-------LAVTDEAACEIAMRS 215
                        I +       ED+   ++R  +L         ++  + A   +    
Sbjct: 55  ------------SIVLEFKKLTKEDIVKGLKRALELIKDDFPGKIISYDEAALDYMGELC 102

Query: 216 RGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL---AIDKMGFDQLDLRYLTMIA 272
            G  R A  +L  +     +   K      +     +      D+ G    D   L+   
Sbjct: 103 EGDLRRALNILELILYSNSLREDKVHITVDSVEKFSQKKILNYDRDGDSHYD--ILSAFQ 160

Query: 273 RNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++  G       +  G+              +I+ G +      R L+ IA + +G+  P
Sbjct: 161 KSIRGSDANAAILYLGM--------------LIKAGDLASIC--RRLLVIASEDVGLAYP 204

Query: 333 H 333
            
Sbjct: 205 Q 205


>gi|307209915|gb|EFN86693.1| Replication factor C subunit 2 [Harpegnathos saltator]
          Length = 351

 Score = 63.6 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 47/254 (18%), Positives = 86/254 (33%), Gaps = 39/254 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             I   RP+   +  G  +  S L VF     A+     +++  GPPG+GKTT    +AR
Sbjct: 37  PWIEKYRPQVFPDIVGNEDTVSRLAVF-----AQHGNTPNIIIAGPPGVGKTTTILCLAR 91

Query: 77  ------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIHRLSIIVE 122
                       EL  +       V  K    A    NL      ++ +DE   ++   +
Sbjct: 92  ILLGPAFKEAVLELNASNERGIDVVRNKIKMFAQKKVNLPKGKHKIIILDEADSMTDGAQ 151

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           + L   ME +           + + +  L       A      +  P+Q R  +      
Sbjct: 152 QALRRTMEIY-----------SHTTRFAL-------ACNNTEEIIEPIQSRCAMLRYGKL 193

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD-FAEVAHAKTI 241
            + + L  +++   +   ++ TD+    I   ++G  R A   L+   + F  V      
Sbjct: 194 TDAQILAKVLE-VCEKENVSYTDDGMEAIVFTAQGDMRQALNNLQSTYNGFNHVNGENVF 252

Query: 242 TREIADAALLRLAI 255
                   L+   +
Sbjct: 253 KVCDEPHPLIVKEM 266


>gi|302380881|ref|ZP_07269343.1| DNA polymerase III, subunit gamma and tau [Finegoldia magna
           ACS-171-V-Col3]
 gi|302311259|gb|EFK93278.1| DNA polymerase III, subunit gamma and tau [Finegoldia magna
           ACS-171-V-Col3]
          Length = 537

 Score = 63.6 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 80/227 (35%), Gaps = 27/227 (11%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVAREL 78
              RP T ++  GQ      LK  IE      + + H  +F G  G GKT+ A++ AR +
Sbjct: 6   RKYRPDTFDKVYGQKHITDILKNQIE-----TKNISHAYIFSGSRGTGKTSCAKIFARAI 60

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHR-----LSIIVEEILYPAMED 131
                    P           L++LE+    ++ +D         +  + ++++YP  + 
Sbjct: 61  NCLDLQNGNP----CNKCENCLSSLEESTLDIVEMDAASNRRIDDIRELRDKVIYPPTKL 116

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             + ++        I ATT +  +   +  R         
Sbjct: 117 KYKVYIIDEAHMITNEGFNALLKIMEEPPKHLVFILATTEIDKIPQTILSRCQRYEFKMI 176

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
              +    I +         + ++A   IA ++ G  R A  +L +V
Sbjct: 177 NSKDISDNI-KYILNDLSRKMDEDAIELIANKADGAMRDALSILDQV 222


>gi|84489878|ref|YP_448110.1| CdcH [Methanosphaera stadtmanae DSM 3091]
 gi|84373197|gb|ABC57467.1| CdcH [Methanosphaera stadtmanae DSM 3091]
          Length = 730

 Score = 63.6 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 55/254 (21%), Positives = 89/254 (35%), Gaps = 27/254 (10%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARELG 79
           E+  G       ++  +E    R E        A   VL  GPPG GKT LA+ VA E  
Sbjct: 204 EDIGGLKNEVKKIREMVEIPLKRPELFKQLGISAPKGVLLHGPPGTGKTLLAKAVANETN 263

Query: 80  VNFRSTSGPVIAKA------GDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAMED 131
            +F   +GP I           L  L    E+    ++FIDE+  ++   EE+       
Sbjct: 264 AHFIVINGPEIMSKYVGGSEEQLRELFEEAEENSPSIIFIDELDAIAPKREEVSGDVERR 323

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
               L+            +     +I AT R   +   L+   RF   I +   + E+ K
Sbjct: 324 TVAQLLT-----LMDGLKSRGEVVVIGATNRPDAIDAALRRPGRFDREIEIGVPDKEERK 378

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL---RRVRDFAEVAHAKTITREIA 246
            I++   +   L   D    E+   + G        L     +R    +       +E+ 
Sbjct: 379 EILEVHTRHMPLD-DDVNLDELTEVTHGFVGADLEALCKEAAMRVLRRILPEIQTDKEVP 437

Query: 247 DAALLRLAIDKMGF 260
              L ++ + K  F
Sbjct: 438 QEVLEKMVLHKKDF 451



 Score = 53.9 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 44/186 (23%), Positives = 68/186 (36%), Gaps = 21/186 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
             ++  G  +A   LK  IE      E            VL  G PG GKT LA+ VA E
Sbjct: 474 NWDDVGGLDDAKQELKEAIEWPLKNPEKFKEFGINPPKGVLLTGVPGTGKTLLAKAVANE 533

Query: 78  LGVNFRSTSGPVIAKA------GDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM 129
              NF S  GP +           +  +          V+F DEI  ++       Y A 
Sbjct: 534 SDANFISVKGPELLSKWVGDSEKGIREVFRKARQTAPTVIFFDEIDAIASTRG---YSAG 590

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
           +      +V +  +       L   ++IAAT R  ++   L    RF   + +   + E 
Sbjct: 591 DSGVTQRVVNQLLTEMDGMEELHDISVIAATNRKDIIDPALLRPGRFDRHVEVGLPDEES 650

Query: 188 LKTIVQ 193
            ++I +
Sbjct: 651 RESIFK 656


>gi|307178287|gb|EFN67059.1| Replication factor C subunit 4 [Camponotus floridanus]
          Length = 357

 Score = 63.6 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 41/237 (17%), Positives = 73/237 (30%), Gaps = 33/237 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+ +++   Q E  +     I  A    +   ++LF GPPG GKT++    AR
Sbjct: 33  PWVEKYRPKNVDDIVEQTEVVN----VIRQAMKHGD-FPNMLFYGPPGTGKTSIIHAAAR 87

Query: 77  ELGVNFRST-----SGPVIAKAGDLAALLTNLEDR---------------DVLFIDEIHR 116
           ++  +         +         +   + +   R                ++ +DE   
Sbjct: 88  QMFGSMYKDRILELNASDDRGIQVVREKIKSFALRKANPIGPDGKKCPPFKIIILDEADS 147

Query: 117 LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
           ++   +  L   ME                V   LSR     A+        PL D   I
Sbjct: 148 MTGAAQTALRRIMEK------EAHSTRFCLVCNYLSRIIKPIASRCTKFRFKPLSDEKSI 201

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                    E+LK    R      +  +     +  M  +   R+ G+      D A
Sbjct: 202 SRLEYICNEENLKAD--RSVLEKIVEASGGDLRQAVMCLQSITRLKGKNYEITVDDA 256


>gi|284989074|ref|YP_003407628.1| DNA polymerase III subunits gamma and tau [Geodermatophilus
           obscurus DSM 43160]
 gi|284062319|gb|ADB73257.1| DNA polymerase III, subunits gamma and tau [Geodermatophilus
           obscurus DSM 43160]
          Length = 765

 Score = 63.6 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 48/265 (18%), Positives = 87/265 (32%), Gaps = 31/265 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T  E  GQ    + L   ++  +         LF GP G GKT+ A+++AR
Sbjct: 4   ALYRKYRPATFAEVVGQEHVTAPLVNAVDGGRINHAY----LFSGPRGCGKTSSARILAR 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR----DVLFID-----EIHRLSIIVEEILYP 127
            L        GP     G   + +    D     DV+ ID      +     + E   + 
Sbjct: 60  SLNCE----QGPTSTPCGTCGSCVALAPDGPGSLDVIEIDAASHGGVDDARDLRERAFFA 115

Query: 128 AMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            +       ++ E             + V+        + ATT    + + ++ R     
Sbjct: 116 PVNSRFKVYIIDEAHMVTTQGFNALLKVVEEPPEFLVFVFATTEPDKVLSTIRSR-THHY 174

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH- 237
                    L+ ++++     G+ V       +     G+ R +  +L ++   A     
Sbjct: 175 PFRLVPPTTLRGLLEKTCAAEGVQVEPTVFPLVVRAGGGSVRDSLSILDQLLAGAGEEGV 234

Query: 238 ---AKTITREIADAALLRLAIDKMG 259
              +      + D ALL   ID + 
Sbjct: 235 TYKSAVGLLGVTDDALLDETIDALA 259


>gi|330993788|ref|ZP_08317720.1| DNA polymerase III subunit tau [Gluconacetobacter sp. SXCC-1]
 gi|329759056|gb|EGG75568.1| DNA polymerase III subunit tau [Gluconacetobacter sp. SXCC-1]
          Length = 690

 Score = 63.6 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 46/267 (17%), Positives = 76/267 (28%), Gaps = 58/267 (21%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T ++  GQ          +  A A+       +  G  G+GKTT A+++AR L
Sbjct: 66  ARKYRPTTFDDLIGQETTV----RILRNAFAQGRVAHAFMLTGVRGVGKTTTARIIARAL 121

Query: 79  GV-----------------------------NFRSTSGPVIAKAGDLAALLTNLEDRD-- 107
                                          +             D+  ++     R   
Sbjct: 122 NCTGPDGRGGPTADPCGVCPNCVAILADRHPDVLEIDAASRTGVDDVREIIEATRFRPLQ 181

Query: 108 ----VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
               V  IDE+H LS      L   +E+                     + T I ATT +
Sbjct: 182 GRMKVFIIDEVHMLSRNAFNALLKTLEE------------------PPPQVTFIFATTEL 223

Query: 164 GLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAG 223
             +   +  R          ++E L     R A+   +  + +A   IA  + G+ R   
Sbjct: 224 RKVLVTVLSRCQTFALRRVPQVE-LAAHFDRVAQAEHVRFSADALALIARAADGSVRDGL 282

Query: 224 RLLRRVRDFAEVAHAKTITREIADAAL 250
            LL +      +              L
Sbjct: 283 SLLDQAIAQGTLDGEGGADAAPIGVDL 309


>gi|255263195|ref|ZP_05342537.1| DNA polymerase III subunits gamma and tau [Thalassiobium sp. R2A62]
 gi|255105530|gb|EET48204.1| DNA polymerase III subunits gamma and tau [Thalassiobium sp. R2A62]
          Length = 585

 Score = 63.6 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 63/301 (20%), Positives = 103/301 (34%), Gaps = 33/301 (10%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T  +  GQ      LK   EA +         +  G  G GKTT A+++A+ +
Sbjct: 13  ARKYRPETFVDLVGQDAMVRTLKNAFEADRIAQA----FIMTGIRGTGKTTTARIIAKGM 68

Query: 79  GV-NFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEIL-----YPAME 130
                    GP     G        +E R  DV+ +D   R  +     +     Y A  
Sbjct: 69  NCIGPDGNGGPTTDPCGTCEHCTAIMEGRHVDVMEMDAASRTGVGDIREIIDSVHYRAAS 128

Query: 131 DFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
                 ++ E             ++++   +    I ATT +  +   +  R      L 
Sbjct: 129 ARYKIYIIDEVHMLSKNAFNALLKTLEEPPAHVKFIFATTEIRQVPVTVLSRCQ-RFDLR 187

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
             E E +  ++++ A      +TD+A   I   + G+ R A  LL    D A    A   
Sbjct: 188 RIEPEVMIALMRKIAASESAEITDDALALITRAAEGSARDATSLL----DQAISHGAGAT 243

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVG-IETISAGLSEPRDAIEDLI 300
           T +   + L      ++  D  D     MI R      +  I    A  ++P   + DL 
Sbjct: 244 TADQVRSMLGLADRGRV-LDLFD-----MIMRGDAHSALSEINQQYADGADPMAVLRDLA 297

Query: 301 E 301
           E
Sbjct: 298 E 298


>gi|160933397|ref|ZP_02080785.1| hypothetical protein CLOLEP_02242 [Clostridium leptum DSM 753]
 gi|156867274|gb|EDO60646.1| hypothetical protein CLOLEP_02242 [Clostridium leptum DSM 753]
          Length = 564

 Score = 63.6 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 81/223 (36%), Gaps = 25/223 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+   +  GQ +    L+  ++A +         LF G  G GKTT A+++A+ +    
Sbjct: 13  RPQVFSDVVGQPQVTVTLQNELKAGRIAHAY----LFTGSRGTGKTTCAKILAKAVNCLS 68

Query: 83  RSTSGPVIAKAGDLAAL--LTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLD 135
                P     G+  +   + N    DV+ ID      +  +  + EE  +         
Sbjct: 69  LKEGDP----CGECESCVGIDNGSVMDVVEIDAASNNGVENIRNLREEASFTPAAAKYRV 124

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             ++++   +    I ATT V  L   +  R       +  + E
Sbjct: 125 YIIDEVHMLSIGAFNALLKTLEEPPAHVVFILATTEVHKLPATILSRCQ-RFDFHRIDPE 183

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
            +   +Q  A      +  EAA  IA  + G  R A  LL + 
Sbjct: 184 VIADRLQFVAGEENAHLEREAALLIARIADGGMRDALSLLDQC 226


>gi|281209849|gb|EFA84017.1| replication factor C subunit [Polysphondylium pallidum PN500]
          Length = 357

 Score = 63.6 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 70/223 (31%), Gaps = 12/223 (5%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +  ++  RP+T++E + Q E    LK  +E        L H+LF GPPG GKT+    VA
Sbjct: 15  EPWVNKYRPKTVDEVSHQDEVVKALKRSLETG-----NLPHLLFYGPPGTGKTSTILAVA 69

Query: 76  RE------LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
            +              +         +   + N     V   + +              +
Sbjct: 70  MDLFGPELYKDRVLELNASDERGIEVVRTKIKNFASFSVSQNNTLTN-GKPAAAFKLIVL 128

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           ++        +    R ++              +  +  PL  R       +  +   ++
Sbjct: 129 DEADSMTHDAQAALRRIIEYTSKTTRFCLLCNYITRIIEPLSSRCAKFRFKSLNDTAMIE 188

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
            +    +  +   V DE    I   S G  R A   L+    F
Sbjct: 189 RLRYIASSESMPPVKDEVYQAIHAVSDGDLRKAITYLQSSYRF 231


>gi|258564276|ref|XP_002582883.1| activator 1 37 kDa subunit [Uncinocarpus reesii 1704]
 gi|237908390|gb|EEP82791.1| activator 1 37 kDa subunit [Uncinocarpus reesii 1704]
          Length = 395

 Score = 63.6 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 42/251 (16%), Positives = 80/251 (31%), Gaps = 34/251 (13%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+TL++   Q    + L+  ++A+      L H+LF GPPG GKT+    +++ L    
Sbjct: 45  RPKTLDDVAAQDHTVTVLQRTLQAS-----NLPHMLFYGPPGTGKTSTILALSKSLFGPK 99

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF---------Q 133
              S  +   A D   +         +  D++   +        P   ++         +
Sbjct: 100 LYRSRILELNASDERGIN--------IVRDKVKNFARTQLSHPPPQDSEYRKQYPCPPFK 151

Query: 134 LDLMVGEGPSARSVKINLSR--------FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           + ++       +  +  L R                 V  + +PL  R     R    + 
Sbjct: 152 IIILDEADSMTQDAQAALRRTMERFSKITRFCLVCNYVTRIIDPLASRCS-KFRFKTLDG 210

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
                 ++   K   L V D     +   S G  R A   ++     A +  +    +  
Sbjct: 211 SAAGGRLEEIVKAEKLRVDDGVIDALIRCSEGDLRRAVTYMQ---SAARLVGSGLAGKSG 267

Query: 246 ADAALLRLAID 256
            D        D
Sbjct: 268 KDEGGDEEMPD 278


>gi|28898953|ref|NP_798558.1| DNA polymerase III subunits gamma and tau [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|153838686|ref|ZP_01991353.1| DNA polymerase III tau subunit [Vibrio parahaemolyticus AQ3810]
 gi|260878849|ref|ZP_05891204.1| DNA polymerase III subunit tau [Vibrio parahaemolyticus AN-5034]
 gi|260896229|ref|ZP_05904725.1| DNA polymerase III subunit tau [Vibrio parahaemolyticus Peru-466]
 gi|28807172|dbj|BAC60442.1| DNA polymerase III, subunits gamma and tau [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|149747906|gb|EDM58778.1| DNA polymerase III tau subunit [Vibrio parahaemolyticus AQ3810]
 gi|308088878|gb|EFO38573.1| DNA polymerase III subunit tau [Vibrio parahaemolyticus Peru-466]
 gi|308094301|gb|EFO43996.1| DNA polymerase III subunit tau [Vibrio parahaemolyticus AN-5034]
          Length = 711

 Score = 63.6 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 51/251 (20%), Positives = 89/251 (35%), Gaps = 29/251 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP   ++  GQ    + L    E A A+       LF G  G+GKT++ ++ A+ L    
Sbjct: 11  RPNKFDQVVGQKHVLTAL----ENALAQNRLHHAYLFSGTRGVGKTSIGRLFAKGLNCET 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILY------PAMEDFQL 134
             T+ P     G+ A      E R  D+L ID   R  +     L       PA   F++
Sbjct: 67  GITATP----CGECATCREIDEGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRFKV 122

Query: 135 DLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            L+               ++++        + ATT    L   +  R  +   L    ++
Sbjct: 123 YLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRC-LQFHLKPISVD 181

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           D+   +        ++   +A   I+  + G+ R A  L     D A       +  +I 
Sbjct: 182 DIHQQLDYILGQEQVSAESKALGMISHAADGSMRDALSL----TDQAIALGNGAVQTDIV 237

Query: 247 DAALLRLAIDK 257
              L  +  D+
Sbjct: 238 SHMLGTIDTDQ 248


>gi|66808355|ref|XP_637900.1| replication factor C subunit [Dictyostelium discoideum AX4]
 gi|74853593|sp|Q54MD4|RFC4_DICDI RecName: Full=Probable replication factor C subunit 4; AltName:
           Full=Activator 1 subunit 4
 gi|60466332|gb|EAL64392.1| replication factor C subunit [Dictyostelium discoideum AX4]
          Length = 347

 Score = 63.6 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 42/274 (15%), Positives = 91/274 (33%), Gaps = 17/274 (6%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +  ++  RP+T+++ + Q +  S LK  +         L H+LF GPPG GKT+    +A
Sbjct: 10  EPWVAKYRPKTVDDVSYQEDVISALKKSLNTG-----NLPHLLFYGPPGTGKTSTILAIA 64

Query: 76  RE------LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
            +      +       +         +   + N     V         S          +
Sbjct: 65  MDIYGPELMKQRVLELNASDERGIEVVRTKIKNFAGYAVN--KTTTGTSNPGATFKLIIL 122

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           ++        +    R+++              +  + +PL  R           +  ++
Sbjct: 123 DEADSMTTDAQAALRRTIETTSKTTRFCLLCNYISRIIDPLASRCAKFRFKPLDTVATIE 182

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA- 248
             ++  ++  G+   +     I + S G  R A   L+    F     ++ +   IA + 
Sbjct: 183 R-LKFISQQEGIKCEESVYQAIQVVSNGDMRKAITYLQSAFRFFANKISEDVIYNIAGSL 241

Query: 249 --ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV 280
              L++  +D    +  D     + +    G PV
Sbjct: 242 PPQLIKQLVDCCKKNSFDRLQSMVQSIIAQGYPV 275


>gi|229525663|ref|ZP_04415068.1| DNA polymerase III subunits gamma and tau [Vibrio cholerae bv.
           albensis VL426]
 gi|229339244|gb|EEO04261.1| DNA polymerase III subunits gamma and tau [Vibrio cholerae bv.
           albensis VL426]
          Length = 692

 Score = 63.6 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 52/265 (19%), Positives = 82/265 (30%), Gaps = 57/265 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP    E  GQ    + L    E A A+       LF G  G+GKTT+ ++ A+ L    
Sbjct: 11  RPTRFSEVVGQSHVLTAL----ENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCET 66

Query: 83  ------------------------RSTSGPVIAKAGDLAALLTNLEDRD------VLFID 112
                                            K  D   LL N++ +       V  ID
Sbjct: 67  GITATPCGQCATCQEIDQGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRFKVYLID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS      L   +E+                         + ATT    L   +  
Sbjct: 127 EVHMLSRHSFNALLKTLEE------------------PPEYVKFLLATTDPQKLPVTILS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R  +   L    +E+++  + +      ++   +A   +A  + G+ R A  L     D 
Sbjct: 169 RC-LQFHLKPISVENIQQQLDKVLHAEQISSDSKALNLLAHAADGSMRDALSL----TDQ 223

Query: 233 AEVAHAKTITREIADAALLRLAIDK 257
           A       +  +I    L  L  D 
Sbjct: 224 AIALGNGVVKSDIVAHMLGTLDTDH 248


>gi|218442642|ref|YP_002380962.1| DNA polymerase III subunits gamma/tau [Cyanothece sp. PCC 7424]
 gi|218175000|gb|ACK73732.1| DNA polymerase III, subunits gamma and tau [Cyanothece sp. PCC
           7424]
          Length = 462

 Score = 63.6 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 70/230 (30%), Gaps = 55/230 (23%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV-- 80
           RP+  ++  GQ      LK  I + K         LF GP G GKT+ A+++A+ L    
Sbjct: 15  RPQQFKDLIGQELISRALKNAIASLKIAN----SYLFTGPRGTGKTSTARILAKALNCKS 70

Query: 81  ------------------------NFRSTSGPVIAKAGDLAALLTNL------EDRDVLF 110
                                   N             D  +L+             V  
Sbjct: 71  TPHSTTHPCGKCPSCQSIERGSSINVNEIDAASHNGVDDARSLIEQSHFAPIDGRYRVFI 130

Query: 111 IDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           +DE H L+   +  L   +E         E P          +   I  TT    L   +
Sbjct: 131 LDECHMLTNQSQNALLKTIE---------ETP---------PQCVFILCTTEPHKLLPTI 172

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPR 220
             R           ++ L   + + A+   +  T +    IA+++ G  R
Sbjct: 173 SSRCQ-TFNFKNTSLKTLSQHLTQIAQQENINTTPDGIKAIAVQANGGLR 221


>gi|262171934|ref|ZP_06039612.1| DNA polymerase III subunits gamma and tau [Vibrio mimicus MB-451]
 gi|261893010|gb|EEY38996.1| DNA polymerase III subunits gamma and tau [Vibrio mimicus MB-451]
          Length = 697

 Score = 63.6 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 52/265 (19%), Positives = 82/265 (30%), Gaps = 57/265 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP    E  GQ    + L    E A A+       LF G  G+GKTT+ ++ A+ L    
Sbjct: 11  RPTRFSEVVGQTHVLTAL----ENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCET 66

Query: 83  ------------------------RSTSGPVIAKAGDLAALLTNLEDRD------VLFID 112
                                            K  D   LL N++ +       V  ID
Sbjct: 67  GITATPCGQCATCKEIDQGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRFKVYLID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS      L   +E+                         + ATT    L   +  
Sbjct: 127 EVHMLSRHSFNALLKTLEE------------------PPEYVKFLLATTDPQKLPVTILS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R  +   L    +E+++  + +  +   +    +A   +A  + G+ R A  L     D 
Sbjct: 169 RC-LQFHLKPISVENIQQQLDKVLQAEQITSDSKALNLLAHAADGSMRDALSL----TDQ 223

Query: 233 AEVAHAKTITREIADAALLRLAIDK 257
           A       +  +I    L  L  D 
Sbjct: 224 AIALGNGVVKSDIVAHMLGTLDTDH 248


>gi|256831655|ref|YP_003160382.1| DNA polymerase III, subunits gamma and tau [Jonesia denitrificans
           DSM 20603]
 gi|256685186|gb|ACV08079.1| DNA polymerase III, subunits gamma and tau [Jonesia denitrificans
           DSM 20603]
          Length = 872

 Score = 63.6 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 64/328 (19%), Positives = 109/328 (33%), Gaps = 38/328 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T  +  GQ      L   + + +         LF GP G GKTT A+V+AR
Sbjct: 4   ALYRRYRPDTFSDMIGQEHVTGPLMQALRSNRVNHAY----LFSGPRGCGKTTSARVLAR 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR----DVLFIDEIHRLSIIVEEILY------ 126
            L     S   P     G   +            DV+ ID      +     L       
Sbjct: 60  ILNCAENSPENPRDTPCGQCPSCQELARGGAGSLDVVEIDAASHGGVDDARELRERATFS 119

Query: 127 PAMEDFQLDLMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
           P+ + +++ ++         G     + V+        I ATT    +   ++ R     
Sbjct: 120 PSRDRYKIFILDEAHMVTAQGFNALLKIVEEPPPYLKFIFATTEPDKVIGTIRSR-THHY 178

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
                  + + + + +     G+A  +     +     G+ R    +L ++   A+    
Sbjct: 179 PFKLVAPDTMLSYISQLCGQEGIAAGEGVLPLVVRAGGGSVRDTLSVLDQLIAGAQ---- 234

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVG--IETISAGLSEPRDAI 296
            +        ALL      +  D +D      +A    G  +   IE I     EPR  +
Sbjct: 235 GSAISYEHAVALLGYTPATLLDDVVD-----ALA-AHDGAALFRVIEEIINTGHEPRRFV 288

Query: 297 EDLIEPYMIQQGFIQR-TPRGRLLMPIA 323
           EDL+E +  +   I   +P G   +  A
Sbjct: 289 EDLLERF--RDLLIVALSPDGARAVLSA 314


>gi|261822478|ref|YP_003260584.1| DNA polymerase III subunits gamma/tau [Pectobacterium wasabiae
           WPP163]
 gi|261606491|gb|ACX88977.1| DNA polymerase III, subunits gamma and tau [Pectobacterium wasabiae
           WPP163]
          Length = 690

 Score = 63.6 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 47/242 (19%), Positives = 84/242 (34%), Gaps = 25/242 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKTT+A+++A+  G+N 
Sbjct: 11  RPQTFTQVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTTIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
                       D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  EQGVTATPCGQCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++        + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  +++  +   LA    A   +A  + G+ R A  L     D A       +T      
Sbjct: 184 RAHLEQVLQAENLANEPRALQLLARAADGSLRDALSL----TDQAIAMGQGQVTTASVSQ 239

Query: 249 AL 250
            L
Sbjct: 240 ML 241


>gi|254226377|ref|ZP_04919965.1| DNA polymerase III, subunits gamma and tau [Vibrio cholerae V51]
 gi|125621066|gb|EAZ49412.1| DNA polymerase III, subunits gamma and tau [Vibrio cholerae V51]
          Length = 665

 Score = 63.6 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 52/265 (19%), Positives = 82/265 (30%), Gaps = 57/265 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP    E  GQ    + L    E A A+       LF G  G+GKTT+ ++ A+ L    
Sbjct: 11  RPTRFSEVVGQSHVLTAL----ENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCET 66

Query: 83  ------------------------RSTSGPVIAKAGDLAALLTNLEDRD------VLFID 112
                                            K  D   LL N++ +       V  ID
Sbjct: 67  GITATPCGQCATCQEIDQGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRFKVYLID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS      L   +E+                         + ATT    L   +  
Sbjct: 127 EVHMLSRHSFNALLKTLEE------------------PPEYVKFLLATTDPQKLPVTILS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R  +   L    +E+++  + +      ++   +A   +A  + G+ R A  L     D 
Sbjct: 169 RC-LQFHLKPISVENIQQQLDKVLHAEQISSDSKALNLLAHAADGSMRDALSL----TDQ 223

Query: 233 AEVAHAKTITREIADAALLRLAIDK 257
           A       +  +I    L  L  D 
Sbjct: 224 AIALGNGVVKSDIVAHMLGTLDTDH 248


>gi|255080440|ref|XP_002503800.1| predicted protein [Micromonas sp. RCC299]
 gi|226519067|gb|ACO65058.1| predicted protein [Micromonas sp. RCC299]
          Length = 948

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 55/248 (22%), Positives = 88/248 (35%), Gaps = 23/248 (9%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +T  +  G  EA   L+  +E  K          +    VL  GPPG GKT LA+ VA E
Sbjct: 446 KTFNDVKGCDEAKQELQEIVEYLKNPDLFTRLGGKLPKGVLLSGPPGTGKTLLARAVAGE 505

Query: 78  LGVNFRSTSGPVIA------KAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
            GV F   +G           +  +  L +  + +   ++FIDEI  +    +   +   
Sbjct: 506 AGVPFFYRAGSEFEEMFVGVGSKRVRQLFSAAKKKTPCIVFIDEIDAVGTSRK--AFETQ 563

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
               L+ ++ E       +       +IAAT     L   L    RF   I +   +I  
Sbjct: 564 SRKTLNQLLTEMDGFEQNEG----IIVIAATNIPEQLDPALTRPGRFDRLIHVPNPDIGG 619

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            + I+        +    +        S  +      L+      A V    TIT E+ D
Sbjct: 620 RREILAHYLSDKPVEADVDVESLARGTSGFSGAELFNLVNMACVQAAVTGETTITSELLD 679

Query: 248 AALLRLAI 255
            A  R+ +
Sbjct: 680 WAKDRIVM 687


>gi|329116172|ref|ZP_08244889.1| DNA polymerase III, subunit gamma and tau [Streptococcus parauberis
           NCFD 2020]
 gi|326906577|gb|EGE53491.1| DNA polymerase III, subunit gamma and tau [Streptococcus parauberis
           NCFD 2020]
          Length = 558

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 84/227 (37%), Gaps = 21/227 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     R +T +E  GQ    + LK  +E+ K         LF GP G GKT+ A++ A+
Sbjct: 4   ALYRKYRSQTFDEMVGQSVISTTLKQAVESKKISHAY----LFSGPRGTGKTSAAKIFAK 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +    +    P      D+   +TN    DV+ ID      +  +  I ++  Y     
Sbjct: 60  AMNCPNQVNGEPCNNC--DICHDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRA 117

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT +  +   +  R         
Sbjct: 118 NYKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQ-RFEFKS 176

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
            + +D+K  +     L  +   +EA   IA R+ G  R A  +L + 
Sbjct: 177 IKQKDIKAHLMHILTLENIPFEEEALGLIARRAEGGMRDALSILDQA 223


>gi|324993075|gb|EGC24995.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
           SK405]
 gi|324995619|gb|EGC27531.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
           SK678]
          Length = 556

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 47/270 (17%), Positives = 81/270 (30%), Gaps = 53/270 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     R +T  +  GQ    + L+  +E  K         LF GP G GKT++A++ A+
Sbjct: 4   ALYRKYRSQTFGQLVGQQVVATTLRQAVEQGKISHAY----LFSGPRGTGKTSVAKIFAK 59

Query: 77  ELGVNFR------------------------STSGPVIAKAGDLAALLTN------LEDR 106
            +    +                                   ++  +         L   
Sbjct: 60  AMNCPNQKEGEPCNECYICQAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLAKH 119

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
            V  IDE+H LS      L   +E+                         I ATT +  +
Sbjct: 120 KVYIIDEVHMLSTGAFNALLKTLEEPT------------------ENVVFILATTELHKI 161

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
              +  R       +    + +  I +   +  G+    E    IA R+ G  R A  +L
Sbjct: 162 PATILSRVQRFEFKSIKTQDIISHI-EWILEQEGIDFEKEGVQIIARRAEGGMRDALSIL 220

Query: 227 RRVRDFAEVAHAKTITREIADAALLRLAID 256
            +     +     T   E    ++   A+D
Sbjct: 221 DQALSLTQENRLTTDIAEEITGSISLGALD 250


>gi|312221202|emb|CBY01143.1| similar to replication factor C subunit 3 [Leptosphaeria maculans]
          Length = 409

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 82/217 (37%), Gaps = 12/217 (5%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +   RP +L++  G  +  + +  F+++ +     L H+L  GPPG GKT+    +AR +
Sbjct: 62  VEKYRPNSLDDVEGHQDIIATINKFVDSNR-----LPHLLLYGPPGTGKTSTVLALARRI 116

Query: 79  GVNFRSTSGPVIAKAGDLAAL-LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
             N       +   A D   + +   + +      +I   +    +      +   LD  
Sbjct: 117 YGNKNMRQMVLELNASDDRGIDVVREQIKTFSSTKQIFSAAPKAGDTALATFKLIILDEA 176

Query: 138 VGEGPSA-----RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
                +A     R ++   +             L+  L  R     R +  + +D++ +V
Sbjct: 177 DAMTATAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRC-TRFRFSPLKDQDIRNLV 235

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
            +  +   + +T +A   +   S+G  R A  +L+  
Sbjct: 236 DKVIEEENVNITQDATDSLVSLSKGDMRRALNVLQAC 272


>gi|303244707|ref|ZP_07331038.1| AAA ATPase central domain protein [Methanothermococcus okinawensis
           IH1]
 gi|302484921|gb|EFL47854.1| AAA ATPase central domain protein [Methanothermococcus okinawensis
           IH1]
          Length = 372

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 95/245 (38%), Gaps = 17/245 (6%)

Query: 26  TLEEFTGQVEACSNLKV---FIEAAKARAE-ALDHVLFVGPPGLGKTTLAQVVARELGVN 81
             +E  GQ  A    K+   +++  +   E A  ++LF GPPG GKT LA+ +A E  V 
Sbjct: 123 RFDEVIGQENAKKKCKIIIKYLKCPELFGEWAPKNILFYGPPGTGKTLLARALATETDVP 182

Query: 82  FRSTSGPVI--AKAGDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAMEDFQ 133
                   +     GD +  + +L ++       ++FIDE+  +++  +           
Sbjct: 183 LYLIKATELIGEHVGDGSKQIQDLYNKALNDRPCIIFIDELDAIALSRQYQSLRGDVSEI 242

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           ++ ++ E     +          IAAT    +L N ++ RF   I+      ++   I++
Sbjct: 243 VNALLTELDGIHNNDG----IVTIAATNNPEMLDNAVRSRFEEEIKFELPNDDERLKIIE 298

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIA-GRLLRRVRDFAEVAHAKTITREIADAALLR 252
              K   + V       +      + R    + L+     A +   K I  +  D  L +
Sbjct: 299 LYTKKMPIKVKANLKKYVEKTKGMSGRDLKEKFLKPALHKAILEDKKFIEEKDLDDVLNK 358

Query: 253 LAIDK 257
           L  +K
Sbjct: 359 LKGNK 363


>gi|189189278|ref|XP_001930978.1| replication factor C subunit 3 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187972584|gb|EDU40083.1| replication factor C subunit 3 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 393

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 74/242 (30%), Gaps = 39/242 (16%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
                   +   RP +L++  G  +  + +  F+++ +     L H+L  GPPG GKT+ 
Sbjct: 38  EAEDSLPWVEKYRPNSLDDVEGHKDIIATINKFVDSNR-----LPHLLLYGPPGTGKTST 92

Query: 71  AQVVAR-------------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDR----- 106
              +AR                   + G++         +    + A      D      
Sbjct: 93  VLALARRIYGNKNMRQMVLELNASDDRGIDVVREQIKTFSSTKQIFAAAPRAGDSSLATF 152

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDFQLD--LMVGEGPSARSVKINLSRFTLIAATTRVG 164
            ++ +DE   ++   +  L   ME +  +    +    + +     LSR T    +    
Sbjct: 153 KLIILDEADAMTATAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKD 212

Query: 165 LLTNPLQDRFGIPIRLNFYEIEDLKTIV-------QRGAKLTGLAVTDEAACEIAMRSRG 217
                L D+  I         +   ++V       +R   +           +   R   
Sbjct: 213 QDIRNLVDKV-IEDEKVNITQDATGSLVTLSKGDMRRALNVLQACHASSTPLQPPGRPAV 271

Query: 218 TP 219
            P
Sbjct: 272 DP 273


>gi|225426826|ref|XP_002283246.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297742576|emb|CBI34725.3| unnamed protein product [Vitis vinifera]
          Length = 330

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 73/227 (32%), Gaps = 23/227 (10%)

Query: 9   SRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           S ++S  D   +   RP  + +  G  +  S L+V      AR   + +++  GPPG GK
Sbjct: 4   SSSMSNYDMPWVEKYRPTKVADIVGNEDTVSRLQVI-----ARDGNMPNLILSGPPGTGK 58

Query: 68  TTLAQVVARE-----LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           TT    +A E             +         +   +     + V      H++ I+ E
Sbjct: 59  TTSVLALAHELLGANYREAVLELNASDDRGIDVVRNKIKMFAQKKVTLPSGSHKIVILDE 118

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIA-ATTRVGLLTNPLQDRFGIPIRLN 181
                        +  G   + R      S  T  A A      +  P+Q R  I     
Sbjct: 119 ADS----------MTTGAQQALRRTMEIYSNSTRFALACNISSKIIEPIQSRCAIVRFSR 168

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
             + E L  ++    +   +    E    I   + G  R A   L+ 
Sbjct: 169 LSDQEILGRLMV-VVEAEKVPFVPEGLEAIIFTADGDMRQALNNLQA 214


>gi|209524864|ref|ZP_03273410.1| Vesicle-fusing ATPase [Arthrospira maxima CS-328]
 gi|209494743|gb|EDZ95052.1| Vesicle-fusing ATPase [Arthrospira maxima CS-328]
          Length = 610

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 57/227 (25%), Positives = 87/227 (38%), Gaps = 27/227 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVARE 77
           TL++  G  +    LK  I     R + L          VL VGPPG GKT  A+ +A E
Sbjct: 88  TLKDIGGLNQELKELKELIAIPLKRPDLLVKLGLEPTHGVLLVGPPGTGKTLTARALAEE 147

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
           LGVN+ +  GP +           L A+          ++FIDEI  L+         A+
Sbjct: 148 LGVNYIALVGPEVITKYYGEAEQKLRAIFEKAAKNAPCIIFIDEIDSLAPNR-----SAV 202

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
           E      +V +  S            L+ AT R   L   L+   RF   I+    +I  
Sbjct: 203 EGEVEKRLVAQLLSLMDGFSQNKGVILLGATNRPDHLDPALRRPGRFDREIQFRVPDING 262

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
            K I++    +   A+  + + ++   +  T    G  L+ V   A 
Sbjct: 263 RKEILE----VLTRAMPLDDSVDLEFIADHTVGFVGADLKAVCQKAA 305



 Score = 49.7 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 73/184 (39%), Gaps = 21/184 (11%)

Query: 28  EEFTGQVEACSNLKVFIEAA--------KARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           E+  G       L+  +E A        + +A A   +L  GPPG GKT LA+ VA +  
Sbjct: 356 EDIGGLETIKQTLRESVEGALLYPELYKETKARAPKGILLWGPPGTGKTLLAKAVASQAR 415

Query: 80  VNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMED 131
            NF   +GP      V A    +  L       D  V+FIDE+  L+           + 
Sbjct: 416 ANFIGINGPDLLSRWVGASEQAVRELFAKARQADPCVIFIDELDTLAPARGTY---TGDS 472

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
              + +VG+  +      + S   +I AT R   +   L    R  + ++++   ++   
Sbjct: 473 GVSNRVVGQLLTELDGLESGSNILVIGATNRPDAIDPALLRAGRLDLQLKVDLPNLDSRF 532

Query: 190 TIVQ 193
            I+Q
Sbjct: 533 KILQ 536


>gi|294656475|ref|XP_458749.2| DEHA2D06688p [Debaryomyces hansenii CBS767]
 gi|199431503|emb|CAG86893.2| DEHA2D06688p [Debaryomyces hansenii]
          Length = 852

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 46/194 (23%), Positives = 74/194 (38%), Gaps = 12/194 (6%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLED 105
           EA   VL  GPPG GKTT+A  +A EL V F + S P +           L  +    + 
Sbjct: 228 EAPRGVLLYGPPGCGKTTIANALAGELQVPFLNISAPSVVSGMSGESEKKLREIFDEAKT 287

Query: 106 RD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
               ++F+DEI  ++   +      ME   +  ++         K +     +I AT R 
Sbjct: 288 LAPCIIFMDEIDAITPKRDGGAQREMERRIVAQLLTLMDELTLDKTDGKPVVVIGATNRP 347

Query: 164 GLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRI 221
             L   L+   RF   I LN    +   +I+        L + +         ++ TP  
Sbjct: 348 DSLDAALRRAGRFDREICLNVPNEDQRCSIL--STMTKNLKLQEGEHFNFRELAKMTPGY 405

Query: 222 AGRLLRRVRDFAEV 235
            G  L+ +   A +
Sbjct: 406 VGADLKSLVTAAGI 419



 Score = 49.3 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 76/231 (32%), Gaps = 18/231 (7%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLED 105
           K    A   VL  GPPG GKT LA+ VA E   NF S  GP +     G+    +  +  
Sbjct: 570 KVGITAPSGVLLWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESERAVRQVFQ 629

Query: 106 RD------VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA 159
           R       ++F DE+  L     +          ++ ++ E         +     +I A
Sbjct: 630 RAKASVPCIIFFDELDALVPKR-DTSLSESSSRVVNTLLTE----LDGLNDRKGVFVIGA 684

Query: 160 TTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDE-AACEIAMRSR 216
           T R  ++   +    R    + +     ++   I++         +        +A   +
Sbjct: 685 TNRPDMIDPAMLRPGRLDKTLYIELPTNDERFEILKTLVNANNTPLDKNVDLRIVADDEK 744

Query: 217 GTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK--MGFDQLDL 265
                   L   VR+   +A  K   +      L      +   G D  D+
Sbjct: 745 CRNFSGADLSSLVREAGVLALKKKFFKGQQIKELDSSGFYESTEGNDDDDI 795


>gi|83313202|ref|YP_423466.1| DNA polymerase III subunits gamma and tau [Magnetospirillum
           magneticum AMB-1]
 gi|82948043|dbj|BAE52907.1| DNA polymerase III, gamma/tau subunits [Magnetospirillum magneticum
           AMB-1]
          Length = 599

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 65/348 (18%), Positives = 109/348 (31%), Gaps = 49/348 (14%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           +   +         RP       GQ      L   I+  +         +  G  G+GKT
Sbjct: 7   TPAPTPYRVLARKYRPTDFAGLIGQEAMVRTLSNAIKTGRLAHA----FVLTGVRGVGKT 62

Query: 69  TLAQVVARELGV-NFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIV---- 121
           T A+++AR L         GP I   G         EDR  D+L +D   R  +      
Sbjct: 63  TTARIIARALNCVGLDGKGGPTIDPCGQCEHCRAIAEDRHVDILEMDAASRTGVNDIREI 122

Query: 122 -EEILYPAMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
            E + Y          ++ E             ++++        + ATT +  +   + 
Sbjct: 123 IEGVRYRPTSARFKIYIIDEVHMLSTAAFNALLKTLEEPPEHVKFVFATTEIRKIPVTVL 182

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R      L   E+E L    +  A      +   A   IA  + G+ R    LL    D
Sbjct: 183 SRCQ-RFDLRRVEMEVLAKHFESIAAKEQAEIEPAALKLIARAADGSVRDGLSLL----D 237

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETI---SAG 288
            A    A  +T       L      ++         L  I +  G  P  ++ I    A 
Sbjct: 238 QAISHGAGAVTEAQVRDMLGLADRARVFD------LLDAIMK--GQVPAALDQITDQYAA 289

Query: 289 LSEPRDAIEDLIE--PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
            ++P   ++D++E   ++ +            + P A   LG     R
Sbjct: 290 GADPVVVLQDMLELVHWLTRL----------KVTPDAADQLGASETER 327


>gi|170078311|ref|YP_001734949.1| DNA-directed DNA polymerase III chain dnaX [Synechococcus sp. PCC
           7002]
 gi|169885980|gb|ACA99693.1| DNA-directed DNA polymerase III chain dnaX [Synechococcus sp. PCC
           7002]
          Length = 742

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 81/221 (36%), Gaps = 19/221 (8%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +      RP+T  +  GQ    + L   +E  +         LF GP G GKT+ A+++A
Sbjct: 4   EPLHHKYRPQTFAQLVGQEAIATTLSNALEQRRIA----PAYLFSGPRGTGKTSSARILA 59

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAME 130
           + L     +   P      ++   + N    DV+ ID      +  +  ++E   +  ++
Sbjct: 60  KSLNCLNAAQPTPHPCGECEVCRAIANGSALDVIEIDAASNTGVDNIRELIERSQFAPVQ 119

Query: 131 DFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
                 ++ E             ++++   +    + ATT    +   +  R        
Sbjct: 120 CRYKVYVIDECHMLSVAAFNALLKTLEEPPAHVVFVLATTDPQRVLPTIISRCQ-RFDYR 178

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
              ++ +   +++ A L  + +  E+   IA  + G  R A
Sbjct: 179 RIPLDAMVAHLRKIAHLENIDIPLESVTLIAQIANGGLRDA 219


>gi|313817549|gb|EFS55263.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL046PA2]
          Length = 633

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 47/237 (19%), Positives = 74/237 (31%), Gaps = 23/237 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T +E  G+      LK  I   +         LF GP G GKTT A+++AR
Sbjct: 100 ALYRRYRPETFDEVIGEDHVIEPLKRAILNNRVNHAY----LFSGPRGCGKTTTARILAR 155

Query: 77  ELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAM 129
            L      T  P        DLA         DV+ ID      +     + E   +  +
Sbjct: 156 ALNCEQGPTPTPCGTCQSCRDLAC--GGPGSIDVIEIDAASHGGVDDARDLRERAFFAPV 213

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                  ++ E             + V+        I ATT    +   ++ R       
Sbjct: 214 HSRYKIYIIDEAHMVTPQGFNALLKLVEEPPPHVKFIFATTEPEKVIGTIRSR-THHYPF 272

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                + L   +       G+ V       +     G+ R +  +L ++   A   H
Sbjct: 273 RLVPPKVLVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVLDQLLGGAADGH 329


>gi|227550400|ref|ZP_03980449.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330]
 gi|257888429|ref|ZP_05668082.1| DNA directed DNA polymerase [Enterococcus faecium 1,141,733]
 gi|257897196|ref|ZP_05676849.1| DNA directed DNA polymerase [Enterococcus faecium Com12]
 gi|293379613|ref|ZP_06625750.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
           PC4.1]
 gi|293572056|ref|ZP_06683067.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium E980]
 gi|227180459|gb|EEI61431.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330]
 gi|257824483|gb|EEV51415.1| DNA directed DNA polymerase [Enterococcus faecium 1,141,733]
 gi|257833761|gb|EEV60182.1| DNA directed DNA polymerase [Enterococcus faecium Com12]
 gi|291607841|gb|EFF37152.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium E980]
 gi|292641762|gb|EFF59935.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
           PC4.1]
          Length = 581

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 52/298 (17%), Positives = 99/298 (33%), Gaps = 38/298 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN- 81
           R +  E+  GQ      LK  I + K         LF GP G GKT+ A++ A+ +    
Sbjct: 11  RSQRFEDIVGQKAVTQTLKNAIVSHKTSHAY----LFTGPRGTGKTSAAKIFAKAINCPN 66

Query: 82  ------------FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
                        RS +        ++ A   N  + ++ FI +    +         A 
Sbjct: 67  SKDGEPCNECEMCRSITAGTQEDVIEIDAASNNGVE-EIRFIRDRANYAPTK-----AAY 120

Query: 130 EDFQLDLMVGEGPSA-----RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           + + +D +      A     ++++        I ATT    +   +  R           
Sbjct: 121 KVYIIDEVHMLSTGAFNALLKTLEEPKESVIFILATTEPHKIPATIISRTQRFDFKRINT 180

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            + +   ++   K + +     A   IA  + G  R A  +L +   F+E     TIT +
Sbjct: 181 AD-IVEHLEFILKESTINYEPAALNVIARSAEGGMRDALSILDQAISFSE----GTITLD 235

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
                        +  + +D      + +        +  I A   E R  +ED+++ 
Sbjct: 236 D-----AMQVTGSLTDEMMDSYLSACVKKEVPEALEALNQILAAGKESRRFLEDMLQY 288


>gi|225468883|ref|XP_002267293.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 633

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 51/217 (23%), Positives = 78/217 (35%), Gaps = 14/217 (6%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALL-------TNLEDRD 107
           VLF GPPG GKT+ A+V+A + GV         I     G+   LL           +  
Sbjct: 361 VLFEGPPGTGKTSCARVIANQAGVPLVYLPLESIMSKYYGESERLLGKVFVHANEFPEGA 420

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           ++F+DE+   ++     ++ A     L +++ +       K    +  +IAAT R   L 
Sbjct: 421 IVFLDEVDSFAVSRSREMHEATRRI-LSVILRQIDGFEQDK----KVVVIAATNRKQDLD 475

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             L  RF   I     +  D + I  + AK    +   E A      S    R   +   
Sbjct: 476 PALMSRFDSMITFGLPDNHDRQKIAAQFAKHLTESELVEFATATEGMSGKDIRDICQQAE 535

Query: 228 RVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLD 264
           R+   A    A    +    AA      D     QL 
Sbjct: 536 RISISASSILASDSEKTRKLAARSASRFDSSAESQLS 572


>gi|195384371|ref|XP_002050891.1| GJ19952 [Drosophila virilis]
 gi|194145688|gb|EDW62084.1| GJ19952 [Drosophila virilis]
          Length = 749

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 59/271 (21%), Positives = 97/271 (35%), Gaps = 24/271 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  EA   LK  +E  K          +    VL VGPPG GKT LA+ VA E 
Sbjct: 312 TFDDVKGCDEAKQELKEVVEFLKNPDKFSNLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 371

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F   +GP          A  +  L    + R   V+FIDEI  +       +     
Sbjct: 372 SVPFFHAAGPEFDEVLVGQGARRVRDLFKAAKARAPCVIFIDEIDSVGAKRTNSVLHPYA 431

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
           +  ++ ++ E               ++ AT R   L   L    RF + + ++  +    
Sbjct: 432 NQTINQLLSEMDGFHQNAG----VIVLGATNRRDDLDQALLRPGRFDVEVVVSTPDFTGR 487

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAM-RSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           K I+     L  +   D     +A   S  T      ++ +    A +  A+T+  +  +
Sbjct: 488 KEIL--SLYLEKILHDDVDLDMLARGTSGFTGADLENMINQAALRAAIDGAETVNMKHLE 545

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
            A  ++ +      +L       I     GG
Sbjct: 546 TARDKVLMGPERKARLPDEEANTITAYHEGG 576


>gi|251782781|ref|YP_002997084.1| DNA polymerase III subunits gamma and tau [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|242391411|dbj|BAH81870.1| DNA polymerase III subunits gamma and tau [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
          Length = 559

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 53/259 (20%), Positives = 91/259 (35%), Gaps = 27/259 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     R +T +E  GQ    + LK  +E+ K         LF GP G GKT+ A++ A+
Sbjct: 4   ALYRKYRSQTFDEMVGQSVISTTLKQAVESGKISHAY----LFSGPRGTGKTSAAKIFAK 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +    +    P      D+   +TN    DV+ ID      +  +  I ++  Y     
Sbjct: 60  AMNCPNQVNGEPCNQC--DICRDITNGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSRA 117

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQD---RFGIPIR 179
                ++ E             ++++        I ATT +  +   +     RF     
Sbjct: 118 TYKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAI 177

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
                 E L +I+       GL    +A   IA R+ G  R A  +L +    +      
Sbjct: 178 KQRAIREHLASIL----DKEGLTYEVDALNLIARRAEGGMRDALSILDQALSLSPDDQVT 233

Query: 240 TITREIADAALLRLAIDKM 258
               E    ++  +A+D  
Sbjct: 234 MAIAEEITGSISMVALDDY 252


>gi|227499706|ref|ZP_03929806.1| possible DNA-directed DNA polymerase [Anaerococcus tetradius ATCC
           35098]
 gi|227218173|gb|EEI83436.1| possible DNA-directed DNA polymerase [Anaerococcus tetradius ATCC
           35098]
          Length = 605

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 89/233 (38%), Gaps = 31/233 (13%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T ++  GQ    + LK      + + +   H  +F G  G GKTT A++ A+ +   
Sbjct: 10  RPKTFDQVLGQDRVVNVLK-----NQVKNKNFSHAYIFAGERGCGKTTCAKIFAKAINCL 64

Query: 82  FRSTSGPVIA----KAGDLAALLTNLEDRDVLFIDEIHR-----LSIIVEEILYPAMEDF 132
                 P +     KA D  + +      D++ +D         +  + + ++YP  +  
Sbjct: 65  HPVDGSPCLECENCKAIDEESTI------DIIEMDAASNRRIDDIRNLKDNVIYPPNKLR 118

Query: 133 QLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
               ++ E             + ++   S    I ATT +  + N +  R       N  
Sbjct: 119 YKVYIIDEAHMITREAFNALLKIMEEPPSHLVFILATTEIDKIPNTILSR-AQNFEFNKI 177

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
           E + +K  +    +   + + +EA   I  ++ G  R A  +L +V  F +  
Sbjct: 178 EAKKIKEQINLILEDKNIVMENEAIDLIIRKASGAMRDALSILDQVLSFDKAK 230


>gi|110678389|ref|YP_681396.1| DNA polymerase III subunits gamma and tau [Roseobacter
           denitrificans OCh 114]
 gi|109454505|gb|ABG30710.1| DNA polymerase III, tau subunit [Roseobacter denitrificans OCh 114]
          Length = 582

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 60/300 (20%), Positives = 103/300 (34%), Gaps = 31/300 (10%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T  +  GQ      LK   EA +         +  G  G GKTT A+++A+ +
Sbjct: 13  ARKYRPETFADLVGQDAMVQTLKNAFEADRIAQA----FIMTGIRGTGKTTTARIIAKGM 68

Query: 79  GVNFRSTSG-PVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSII-----VEEILYPAME 130
                  +G P     G        +E R  DV+ +D      +      ++ + Y A  
Sbjct: 69  NCIGPDGTGRPTTDPCGTCEHCTAIMEGRHVDVMEMDAASNTGVANIREIIDSVHYRAAS 128

Query: 131 DFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
                 ++ E             ++++        I ATT +  +   +  R      L 
Sbjct: 129 ARYKVYIIDEVHMLSTGAFNALLKTLEEPPEHVKFIFATTEIRKVPVTVLSRCQ-RFDLR 187

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
             E E +  ++++ A   G  +  +A   IA  + G+ R A  LL    D A    A   
Sbjct: 188 RIEPEVMIDLMRKIATAEGAEIAQDAMALIARAAEGSARDATSLL----DQAISHGAGET 243

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
           T     A L      ++  D  D     ++  +  G    +    A  ++P   + DL E
Sbjct: 244 TAAQVRAMLGLADRGRV-LDLFD----MILRGDTAGALTELSAQYAEGADPMAVLRDLAE 298


>gi|229529855|ref|ZP_04419245.1| DNA polymerase III subunits gamma and tau [Vibrio cholerae
           12129(1)]
 gi|229333629|gb|EEN99115.1| DNA polymerase III subunits gamma and tau [Vibrio cholerae
           12129(1)]
          Length = 692

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 52/265 (19%), Positives = 82/265 (30%), Gaps = 57/265 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP    E  GQ    + L    E A A+       LF G  G+GKTT+ ++ A+ L    
Sbjct: 11  RPTRFSEVVGQSHVLTAL----ENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCET 66

Query: 83  ------------------------RSTSGPVIAKAGDLAALLTNLEDRD------VLFID 112
                                            K  D   LL N++ +       V  ID
Sbjct: 67  GITATPCGQCATCQEIDQGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRFKVYLID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS      L   +E+                         + ATT    L   +  
Sbjct: 127 EVHMLSRHSFNALLKTLEE------------------PPEYVKFLLATTDPQKLPVTILS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R  +   L    +E+++  + +      ++   +A   +A  + G+ R A  L     D 
Sbjct: 169 RC-LQFHLKPISVENIQQQLDKVLHAEQISSDSKALNLLAHAADGSMRDALSL----TDQ 223

Query: 233 AEVAHAKTITREIADAALLRLAIDK 257
           A       +  +I    L  L  D 
Sbjct: 224 AIALGNGVVKSDIVAHMLGTLDTDH 248


>gi|297578658|ref|ZP_06940586.1| DNA polymerase III [Vibrio cholerae RC385]
 gi|297536252|gb|EFH75085.1| DNA polymerase III [Vibrio cholerae RC385]
          Length = 692

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 52/265 (19%), Positives = 82/265 (30%), Gaps = 57/265 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP    E  GQ    + L    E A A+       LF G  G+GKTT+ ++ A+ L    
Sbjct: 11  RPTRFSEVVGQSHVLTAL----ENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCET 66

Query: 83  ------------------------RSTSGPVIAKAGDLAALLTNLEDRD------VLFID 112
                                            K  D   LL N++ +       V  ID
Sbjct: 67  GITATPCGQCATCQEIDQGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRFKVYLID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS      L   +E+                         + ATT    L   +  
Sbjct: 127 EVHMLSRHSFNALLKTLEE------------------PPEYVKFLLATTDPQKLPVTILS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R  +   L    +E+++  + +      ++   +A   +A  + G+ R A  L     D 
Sbjct: 169 RC-LQFHLKPISVENIQQQLDKVLHAEQISSDSKALNLLAHAADGSMRDALSL----TDQ 223

Query: 233 AEVAHAKTITREIADAALLRLAIDK 257
           A       +  +I    L  L  D 
Sbjct: 224 AIALGNGVVKSDIVAHMLGTLDTDH 248


>gi|254293230|ref|YP_003059253.1| DNA polymerase III subunits gamma and tau [Hirschia baltica ATCC
           49814]
 gi|254041761|gb|ACT58556.1| DNA polymerase III, subunits gamma and tau [Hirschia baltica ATCC
           49814]
          Length = 619

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 54/265 (20%), Positives = 89/265 (33%), Gaps = 25/265 (9%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T ++  GQ      L      A          +  G  G+GKTT A+++AR L
Sbjct: 41  ARKYRPTTFDDMVGQEAMVRTL----TNAFKTGRIAHAFMLTGVRGVGKTTTARLLARAL 96

Query: 79  GVNFRSTSGPV--IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA-------- 128
             +      P   ++  G     +      DVL +D   R  +     L           
Sbjct: 97  NYSRDGVEEPSVQLSPVGRHCQAIMESRHPDVLELDAASRTGVADMRELLDGVRYSPVNA 156

Query: 129 -MEDFQLDLMVGEGPSA-----RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             + + +D +     +A     ++++        I ATT +  +   +  R      L  
Sbjct: 157 RYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLSRCQ-RFNLAR 215

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
              + L   + R  +  G  V++E    I+  + G+ R A  +L    D A V       
Sbjct: 216 LTTDALAAHLGRICEKEGAKVSEEGLALISRAAEGSARDALSVL----DQAIVQSTGDEV 271

Query: 243 REIADAALLRLAIDKMGFDQLDLRY 267
              A   +L LA     FD LD   
Sbjct: 272 SVDAVRDMLGLADRARVFDLLDAAI 296


>gi|226493143|ref|NP_001149058.1| LOC100282678 [Zea mays]
 gi|195624372|gb|ACG34016.1| replication factor C subunit 4 [Zea mays]
          Length = 331

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 76/226 (33%), Gaps = 38/226 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP  + +  G  +A + L+V      AR   + +++  GPPG GKTT    +A 
Sbjct: 14  PWVEKYRPSRVADVVGNSDAVARLEVI-----ARDGNMPNLILSGPPGTGKTTSILALAH 68

Query: 77  ------------ELGVNFRSTSGPVIAKAGDLA--ALLTNLEDRDVLFIDEIHRLSIIVE 122
                       EL  +       V  K    A   +        ++ +DE   ++   +
Sbjct: 69  ELLGPSYRDAVLELNASDDRGLDVVRNKIKMFAQKKVTLQPGRHKIVILDEADSMTSGAQ 128

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           + L   ME +                 N +RF L   T+    +  P+Q R  I      
Sbjct: 129 QALRRTMEIYS----------------NTTRFALACNTS--SKIIEPIQSRCAIVRFSRL 170

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            + E L  ++   A    +    E    I   + G  R A   L+ 
Sbjct: 171 SDQEILGRLMIVVAAE-KVPYAPEGLEAIIFTADGDMRQALNNLQA 215


>gi|323127623|gb|ADX24920.1| DNA polymerase III subunits gamma and tau [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 559

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 53/259 (20%), Positives = 91/259 (35%), Gaps = 27/259 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     R +T +E  GQ    + LK  +E+ K         LF GP G GKT+ A++ A+
Sbjct: 4   ALYRKYRSQTFDEMVGQSVISTTLKQAVESGKISHAY----LFSGPRGTGKTSAAKIFAK 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +    +    P      D+   +TN    DV+ ID      +  +  I ++  Y     
Sbjct: 60  AMNCPNQVNGEPCNQC--DICRDITNGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSRA 117

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQD---RFGIPIR 179
                ++ E             ++++        I ATT +  +   +     RF     
Sbjct: 118 TYKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAI 177

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
                 E L +I+       GL    +A   IA R+ G  R A  +L +    +      
Sbjct: 178 KQRAIREHLASIL----DKEGLTYEVDALNLIARRAEGGMRDALSILDQALSLSPDDQVT 233

Query: 240 TITREIADAALLRLAIDKM 258
               E    ++  +A+D  
Sbjct: 234 MAIAEEITGSISMVALDDY 252


>gi|294461526|gb|ADE76324.1| unknown [Picea sitchensis]
 gi|294463669|gb|ADE77361.1| unknown [Picea sitchensis]
          Length = 335

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 44/241 (18%), Positives = 80/241 (33%), Gaps = 38/241 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP  + +  G  +A S L+V      AR   + +++  GPPG GKTT    +A 
Sbjct: 18  PWVEKYRPSKVSDIVGNQDALSRLQVI-----ARDGNMPNLILAGPPGTGKTTSILALAH 72

Query: 77  E-----LGVNFRSTSGPVIAKAGDLAALLTNLEDR---------DVLFIDEIHRLSIIVE 122
           E             +         +   +     +          ++ +DE   ++   +
Sbjct: 73  ELLGSNYKEGVIELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTGGAQ 132

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           + L   ME F                 N +RF L   T+    +  P+Q R  I      
Sbjct: 133 QALRRTMEIFS----------------NSTRFALACNTS--AKIIEPIQSRCAIVRFSKL 174

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            + E L   + R  +   +A   E    I   + G  R A   L+      +  + + + 
Sbjct: 175 SDQEILGR-LMRVVEAEKVAYVPEGLEAIIFTADGDMRQALNNLQATYSGFQFVNQENVF 233

Query: 243 R 243
           +
Sbjct: 234 K 234


>gi|301121234|ref|XP_002908344.1| ribosome biogenesis ATPase RIX7 [Phytophthora infestans T30-4]
 gi|262103375|gb|EEY61427.1| ribosome biogenesis ATPase RIX7 [Phytophthora infestans T30-4]
          Length = 800

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 58/232 (25%), Positives = 82/232 (35%), Gaps = 24/232 (10%)

Query: 23  RPR-TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQV 73
           RP     +  G       ++  IE      E   H        VL  GPPG GK+ LA  
Sbjct: 145 RPSARYSDVGGIQSILQEVRELIEYPLTHPEVYAHLGVEPPRGVLLHGPPGTGKSMLAHA 204

Query: 74  VARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEIL 125
           +A E G  F   S P +           L  L      R   ++FIDEI  ++   E   
Sbjct: 205 IAGECGATFLKISAPEVVSGMSGESEQKLRELFDEAISRAPSIIFIDEIDAITPKRETSA 264

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183
              ME   +  ++    S            LI AT R   L + L+   RF   I L   
Sbjct: 265 -RGMEKRIVAQLLTSTDSLSLENTGGKPVILIGATNRPDALDSALRRAGRFDREICLGIP 323

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
           + E  + I+    ++    +T E   + A  +R TP   G  L  +   A V
Sbjct: 324 DEEAREKIL----RVLARKMTLEGEFDFAALARRTPGYVGADLVSLTKEAAV 371



 Score = 43.9 bits (102), Expect = 0.030,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 8/73 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL  GPPG GKT LA+ +A E G NF S  GP +     G+    +  +  R       V
Sbjct: 516 VLLYGPPGCGKTLLAKAIAHESGANFISIKGPELLDKYVGESERSVRQVFQRARASSPCV 575

Query: 109 LFIDEIHRLSIIV 121
           +F DE+  L+   
Sbjct: 576 VFFDELDALAPRR 588


>gi|258621806|ref|ZP_05716837.1| DNA polymerase III, subunits gamma and tau [Vibrio mimicus VM573]
 gi|258586037|gb|EEW10755.1| DNA polymerase III, subunits gamma and tau [Vibrio mimicus VM573]
          Length = 697

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 52/265 (19%), Positives = 82/265 (30%), Gaps = 57/265 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP    E  GQ    + L    E A A+       LF G  G+GKTT+ ++ A+ L    
Sbjct: 11  RPTRFSEVVGQTHVLTAL----ENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCET 66

Query: 83  ------------------------RSTSGPVIAKAGDLAALLTNLEDRD------VLFID 112
                                            K  D   LL N++ +       V  ID
Sbjct: 67  GITATPCGQCATCKEIDQGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRFKVYLID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS      L   +E+                         + ATT    L   +  
Sbjct: 127 EVHMLSRHSFNALLKTLEE------------------PPEYVKFLLATTDPQKLPVTILS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R  +   L    +E+++  + +  +   +    +A   +A  + G+ R A  L     D 
Sbjct: 169 RC-LQFHLKPISVENIQQQLDKVLQAEQITSDSKALNLLAHAADGSMRDALSL----TDQ 223

Query: 233 AEVAHAKTITREIADAALLRLAIDK 257
           A       +  +I    L  L  D 
Sbjct: 224 AIALGNGVVKSDIVAHMLGTLDTDH 248


>gi|210629774|ref|ZP_03296118.1| hypothetical protein COLSTE_00001 [Collinsella stercoris DSM 13279]
 gi|210160801|gb|EEA91772.1| hypothetical protein COLSTE_00001 [Collinsella stercoris DSM 13279]
          Length = 387

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 89/242 (36%), Gaps = 30/242 (12%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVV 74
           ++     RP T E   GQ    S LK  +   +     L H  LF GP G GKTT+A+++
Sbjct: 2   ESLYRKYRPLTFESVVGQQHIVSTLKHAVAEGR-----LSHAYLFCGPRGTGKTTMARIL 56

Query: 75  ARE---LGVNFRSTSGPV----IAKAGDLAALLTNLEDRDVLFIDEIHR----------L 117
           A+     G      +G           +  A+       DV  +D   R          +
Sbjct: 57  AKSLLCEGSEAARATGASGCMPDGTCPECEAIAAGTHP-DVYELDAASRTGVDNVREEII 115

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSA-----RSVKINLSRFTLIAATTRVGLLTNPLQD 172
           + +    +  A + + +D +     +A     ++++   S    +  TT    +   +  
Sbjct: 116 NSVSFAPVRGAYKVYIIDEVHMLTTAAFNALLKTLEEPPSHVVFVLCTTDPQKILETILS 175

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R       +    ED+   ++   +  G A  +EA   +A  +RG  R A   L ++  F
Sbjct: 176 RCQ-RFDFHRISNEDIVGRLRFICEQEGFAFDEEALEIVARHARGGMRDALSTLEQLSVF 234

Query: 233 AE 234
            +
Sbjct: 235 GD 236


>gi|254291725|ref|ZP_04962511.1| DNA polymerase III, subunits gamma and tau [Vibrio cholerae
           AM-19226]
 gi|150422318|gb|EDN14279.1| DNA polymerase III, subunits gamma and tau [Vibrio cholerae
           AM-19226]
          Length = 692

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 52/265 (19%), Positives = 82/265 (30%), Gaps = 57/265 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP    E  GQ    + L    E A A+       LF G  G+GKTT+ ++ A+ L    
Sbjct: 11  RPTRFSEVVGQSHVLTAL----ENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCET 66

Query: 83  ------------------------RSTSGPVIAKAGDLAALLTNLEDRD------VLFID 112
                                            K  D   LL N++ +       V  ID
Sbjct: 67  GITATPCGQCATCQEIDQGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRFKVYLID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS      L   +E+                         + ATT    L   +  
Sbjct: 127 EVHMLSRHSFNALLKTLEE------------------PPEYVKFLLATTDPQKLPVTILS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R  +   L    +E+++  + +      ++   +A   +A  + G+ R A  L     D 
Sbjct: 169 RC-LQFHLKPISVENIQQQLDKVLHAEQISSDSKALNLLAHAADGSMRDALSL----TDQ 223

Query: 233 AEVAHAKTITREIADAALLRLAIDK 257
           A       +  +I    L  L  D 
Sbjct: 224 AIALGNGVVKSDIVAHMLGTLDTDH 248


>gi|221135204|ref|ZP_03561507.1| DNA polymerase III subunits gamma and tau [Glaciecola sp. HTCC2999]
          Length = 834

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 52/281 (18%), Positives = 83/281 (29%), Gaps = 63/281 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP    E  GQ    +     I  A          LF G  G+GKTT+A++ A+ L  + 
Sbjct: 11  RPNKFSELVGQEHVVT----AISNALDNNRLHHAYLFTGTRGVGKTTIARIFAKSLNCDT 66

Query: 83  ------------------------RSTSGPVIAKAGDLAALLTNLEDRD------VLFID 112
                                            K  D   LL N++ R       V  ID
Sbjct: 67  GLSANPCGECGTCRDIEQGRFVDLLEIDAASRTKVDDTRELLDNVQYRPTQGDYKVYLID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS      L   +E+                         + ATT    L   +  
Sbjct: 127 EVHMLSKHSFNALLKTLEE------------------PPPHVKFLLATTDPQKLPVTILS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R  +   L     E ++  +        +     A  ++A  + G+ R A  L     D 
Sbjct: 169 RC-LQFNLKALSREQIQQQLSHVLTQEHINHEPAALAQLARAANGSMRDALSL----TDQ 223

Query: 233 AEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIAR 273
           A       I+  +    L  +  +++      L+ L  +  
Sbjct: 224 AIAQGNNQISTVVVSDMLGLMDKNQI------LKILHSMIE 258


>gi|116753581|ref|YP_842699.1| replication factor C small subunit [Methanosaeta thermophila PT]
 gi|116665032|gb|ABK14059.1| replication factor C small subunit [Methanosaeta thermophila PT]
          Length = 305

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 46/212 (21%), Positives = 75/212 (35%), Gaps = 37/212 (17%)

Query: 32  GQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL------------G 79
           GQ E    LK ++         L H+LF GPPG+GKT  A  + RE+             
Sbjct: 2   GQPEIVRRLKSYV-----ATRNLPHLLFSGPPGVGKTAAAISIVREIFGEGWRDNFIELN 56

Query: 80  VNFRSTSGPVIAKAGDLAALL-TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138
            +       V  K  D A +      +  V+F+DE   L+   +  L   ME +      
Sbjct: 57  ASDERGIDVVRTKVKDFARMAPLGGAEFKVIFLDEADALTSDAQSALRRTMERYSAT--- 113

Query: 139 GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKL 198
                             I +      +  P+Q R  +  R      + ++  ++  A+ 
Sbjct: 114 ---------------CRFILSCNYSSKIIEPIQSRCAV-YRFRALTPDAIEKRIRYIAEQ 157

Query: 199 TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
            G+ VT++    I   +RG  R A   L+   
Sbjct: 158 EGVEVTEDGIEAINYVARGDMRKAINALQAAA 189


>gi|139473596|ref|YP_001128312.1| DNA polymerase III subunits gamma and tau [Streptococcus pyogenes
           str. Manfredo]
 gi|306827119|ref|ZP_07460411.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus pyogenes
           ATCC 10782]
 gi|134271843|emb|CAM30078.1| DNA polymerase III subunit gamma/tau [Streptococcus pyogenes str.
           Manfredo]
 gi|304430672|gb|EFM33689.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus pyogenes
           ATCC 10782]
          Length = 556

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 56/304 (18%), Positives = 99/304 (32%), Gaps = 48/304 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     R +T +E  GQ    + LK  +E+ K         LF GP G GKT+ A++ A+
Sbjct: 4   ALYRKYRSQTFDEMVGQSVISTTLKQAVESGKISHAY----LFSGPRGTGKTSAAKIFAK 59

Query: 77  ELGVNFR---------------------------STSGPVIAKAGDLAALLTNLEDR--- 106
            +    +                           + S   + +  D+    T    R   
Sbjct: 60  AMNCPNQVDGEPCNQCDICRDITNGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSRATY 119

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDFQ--LDLMVGEGPSARSVKINLSRFTLIAATTRVG 164
            V  IDE+H LS      L   +E+    +  ++      +     LSR           
Sbjct: 120 KVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKQ 179

Query: 165 LLTNPLQDRFGIPIRLN--FYEIEDLKTIVQRGAKLTGLA-VTDEAACEIAMRSRGTPRI 221
                +++     +      YE++ L  I +R       A    + A  ++  ++ T  I
Sbjct: 180 ---KAIREHLAWVLDKEGIAYEVDALNLIARRAEGGMRDALSILDQALSLSPDNQVTIAI 236

Query: 222 AGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDL------RYLTMIARNF 275
           A  +   +   A   + + +++E A  AL  L         +         YL  +    
Sbjct: 237 AEEITGSISMLALGDYVRYVSQEQATQALAALETIYDSGKSMSRFATDLLTYLRDLLVVK 296

Query: 276 GGGP 279
            GG 
Sbjct: 297 AGGD 300


>gi|70606569|ref|YP_255439.1| SAV protein-like [Sulfolobus acidocaldarius DSM 639]
 gi|30088847|gb|AAP13472.1| AAA family ATPase [Sulfolobus acidocaldarius]
 gi|68567217|gb|AAY80146.1| SAV protein-like [Sulfolobus acidocaldarius DSM 639]
          Length = 773

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 65/320 (20%), Positives = 114/320 (35%), Gaps = 43/320 (13%)

Query: 16  DADISLLR-PR-TLEEFTGQVEACSNLKVFIEA--------AKARAEALDHVLFVGPPGL 65
           +  +   R PR T E+  G  E    ++  +E          +   E    +L  GPPG+
Sbjct: 182 EKPVEQTRYPRVTYEDIGGMKEIIQKIRELVELPLRHPELFKRLGIEPPKGILLYGPPGV 241

Query: 66  GKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRL 117
           GKT LA+ VA E    F S +GP I           L  +  + +     ++FIDEI  +
Sbjct: 242 GKTLLAKAVANETDAYFTSINGPEIMSKFYGESEQRLREIFEDAKKHAPAIIFIDEIDAI 301

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFG 175
           +   +E++          L+            N     +IAAT R   +   L+   RF 
Sbjct: 302 APKRDEVIGEVERRVVAQLLT-----LMDGLENRGNVIVIAATNRPNAVDPALRRPGRFD 356

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
             I +   + +    I+Q   +   L+   +      M    T      L+R     A  
Sbjct: 357 REIEIPLPDKQGRLEILQIHTRNMPLSKDVDLHKLAEMTHGYTGADLSALVREAAMNA-- 414

Query: 236 AHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISA-------- 287
                + R I    L +  I     +++++R    +       P G+  I          
Sbjct: 415 -----LRRYIQMIDLSQDKIPPEILEKMEVRMDDFLKAFKDIVPSGLREIYIEVPEVHWF 469

Query: 288 ---GLSEPRDAIEDLIEPYM 304
              GL E ++ + +++E  +
Sbjct: 470 DIGGLEEVKEELREVVEYPL 489



 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 50/243 (20%), Positives = 81/243 (33%), Gaps = 26/243 (10%)

Query: 29  EFTGQVEACSNLKVFIEAAKA--------RAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           +  G  E    L+  +E              E    +L  GPPG GKT LA+ VA E G 
Sbjct: 470 DIGGLEEVKEELREVVEYPLKYREVYENMSIEPPKGILLFGPPGTGKTMLAKAVATESGA 529

Query: 81  NFRSTSGPVI------AKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAMEDF 132
           NF +  GP I           +  +          V+F DEI  ++ I       + +  
Sbjct: 530 NFIAVRGPEILSKWVGESEKAIREIFRKARQAAPTVIFFDEIDSIAPIR----GLSTDSG 585

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKT 190
             + +V +  +       L    +IAAT R  +L   L    RF   I +   +      
Sbjct: 586 VTERIVNQLLAEMDGIEKLENVVVIAATNRPDILDPALLRPGRFDRLIYVPPPDKTARFE 645

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           I++       + + ++ + E    +       G  L  V   A +   +    E    A 
Sbjct: 646 ILK--VHTKNVPLAEDVSLEDI--AEKAEGYTGADLAAVVREAALRAIREQMAECMGEAN 701

Query: 251 LRL 253
              
Sbjct: 702 NEC 704


>gi|227328730|ref|ZP_03832754.1| DNA polymerase III subunits gamma and tau [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 687

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 82/242 (33%), Gaps = 25/242 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T     GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFAHVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
                       D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  EQGVTATPCGQCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++        + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  +++  +   L     A   +A  + G+ R A  L     D A       +T      
Sbjct: 184 RAHLEQVLQAENLVSEPRALQLLARAADGSLRDALSL----TDQAIAMGQGQVTTASVSQ 239

Query: 249 AL 250
            L
Sbjct: 240 ML 241


>gi|114326925|ref|YP_744082.1| DNA polymerase III subunits gamma and tau [Granulibacter
           bethesdensis CGDNIH1]
 gi|114315099|gb|ABI61159.1| DNA polymerase III subunit gamma/tau [Granulibacter bethesdensis
           CGDNIH1]
          Length = 686

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 47/242 (19%), Positives = 74/242 (30%), Gaps = 58/242 (23%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV-- 80
           RPR  ++  GQ      L+     A A        +  G  G+GKTT A+++AR L    
Sbjct: 56  RPRHFDDLIGQDALVRTLR----NAFALNRVAHAFMLTGVRGVGKTTTARIIARALNCTG 111

Query: 81  ---------------------------NFRSTSGPVIAKAGDLAALLTNLEDRD------ 107
                                      +             D+  ++     R       
Sbjct: 112 ADGQGGPTADPCGVCPNCTAILADRHPDVVEMDAASRTGVDDVREIIEATRFRPLQARTK 171

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           V  IDE+H LS      L   +E+                       T I ATT +  + 
Sbjct: 172 VFIIDEVHMLSRNAFNALLKTLEE------------------PPPHVTFIFATTELRKVP 213

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             +  R      L   + E L     R  +  G++ + +A   IA  + G+ R    LL 
Sbjct: 214 VTVLSRCQ-RFDLRRIDAEVLSAHFSRILEQEGVSASPQALALIARAADGSVRDGLSLLD 272

Query: 228 RV 229
           + 
Sbjct: 273 QA 274


>gi|91204862|ref|YP_537217.1| DNA polymerase III subunits gamma and tau [Rickettsia bellii
           RML369-C]
 gi|91068406|gb|ABE04128.1| DNA polymerase III gamma and tau chains [Rickettsia bellii
           RML369-C]
          Length = 508

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 47/245 (19%), Positives = 85/245 (34%), Gaps = 21/245 (8%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP +  E  GQ      L   I   +         L  G  G+GKTT A+++A+ +
Sbjct: 14  ARKYRPSSFAELHGQEVLVKVLSYTILNNRLAGGY----LLTGIRGVGKTTSARIIAKAV 69

Query: 79  GVNFRSTSGPVIAKAGDLAALLT--NLEDRDVLFIDEIHRLS-----IIVEEILYPAMED 131
             +   T    I         ++  N    D++ ID   + S      I+E   Y  ++ 
Sbjct: 70  NCSALITEDNNIKTCEQCVNCVSFNNHNHSDIIEIDAASKTSVDDIRRIIESAEYKPLQG 129

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT V  +   +  R      L  
Sbjct: 130 KYKIFIIDEVHMLSKGAFNALLKTLEEPPPHVIFIFATTEVQKIPATIISRCQ-RYDLKR 188

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
              E++  +++   K   L    EA   IA +S G+ R A  +L +    +  + +    
Sbjct: 189 LSFEEIFKLLEYIVKEENLKTDIEALRVIAYKSDGSARDAVSILDQAASLSAKSDSMITR 248

Query: 243 REIAD 247
           + I  
Sbjct: 249 QAINQ 253


>gi|18309027|ref|NP_560961.1| DNA polymerase III subunits gamma and tau [Clostridium perfringens
           str. 13]
 gi|168213992|ref|ZP_02639617.1| DNA polymerase III, gamma and tau subunit [Clostridium perfringens
           CPE str. F4969]
 gi|18143702|dbj|BAB79751.1| DNA polymerase III gamma and tau subunits [Clostridium perfringens
           str. 13]
 gi|170714512|gb|EDT26694.1| DNA polymerase III, gamma and tau subunit [Clostridium perfringens
           CPE str. F4969]
          Length = 547

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 46/250 (18%), Positives = 87/250 (34%), Gaps = 25/250 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + LK  I             LF G  G GKT+ A+V+A+ L    
Sbjct: 11  RPQTFNDVVGQEHITTTLKNQI----INERTAHAYLFCGTRGTGKTSTAKVMAKALNC-L 65

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
               G    +      +   L   D+  +D      + ++  I++++ YP  E      +
Sbjct: 66  DLKDGEPCNQCEMCKKINEGLAI-DITELDAASNNGVDKIRDIIDDVQYPPQEARFKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT    L   +  R            +D+
Sbjct: 125 MDEVHMLSIGAVNAFLKTLEEPPKNVVFILATTDPQKLPITILSRCQ-RFDFKRISRKDI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              +++     G+   D++   +A  S G  R +  +L    D A       +  +   +
Sbjct: 184 TGRLRKIVTEQGIFCDDKSLDLVARVSDGAMRDSLSIL----DQAISIGDGKVDYDELVS 239

Query: 249 ALLRLAIDKM 258
            L  +  D +
Sbjct: 240 MLGLVTNDNL 249


>gi|28895734|ref|NP_802084.1| DNA polymerase III subunits gamma and tau [Streptococcus pyogenes
           SSI-1]
 gi|28810983|dbj|BAC63917.1| putative DNA polymerase III gamma/tau subunit [Streptococcus
           pyogenes SSI-1]
          Length = 557

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 56/304 (18%), Positives = 99/304 (32%), Gaps = 48/304 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     R +T +E  GQ    + LK  +E+ K         LF GP G GKT+ A++ A+
Sbjct: 5   ALYRKYRSQTFDEMVGQSVISTTLKQAVESGKISHAY----LFSGPRGTGKTSAAKIFAK 60

Query: 77  ELGVNFR---------------------------STSGPVIAKAGDLAALLTNLEDR--- 106
            +    +                           + S   + +  D+    T    R   
Sbjct: 61  AMNCPNQVDGEPCNQCDICRDITNGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSRATY 120

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDFQ--LDLMVGEGPSARSVKINLSRFTLIAATTRVG 164
            V  IDE+H LS      L   +E+    +  ++      +     LSR           
Sbjct: 121 KVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKQ 180

Query: 165 LLTNPLQDRFGIPIRLN--FYEIEDLKTIVQRGAKLTGLA-VTDEAACEIAMRSRGTPRI 221
                +++     +      YE++ L  I +R       A    + A  ++  ++ T  I
Sbjct: 181 ---KAIREHLAWVLDKEGIAYEVDALNLIARRAEGGMRDALSILDQALSLSPDNQVTIAI 237

Query: 222 AGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDL------RYLTMIARNF 275
           A  +   +   A   + + +++E A  AL  L         +         YL  +    
Sbjct: 238 AEEITGSISMLALGDYVRYVSQEQATQALAALETIYDSGKSMSRFATDLLTYLRDLLVVK 297

Query: 276 GGGP 279
            GG 
Sbjct: 298 AGGD 301


>gi|254718255|ref|ZP_05180066.1| DNA polymerase III subunits gamma and tau [Brucella sp. 83/13]
 gi|265983215|ref|ZP_06095950.1| DNA polymerase III gamma and tau [Brucella sp. 83/13]
 gi|306839997|ref|ZP_07472791.1| DNA polymerase III, subunits gamma and tau [Brucella sp. NF 2653]
 gi|264661807|gb|EEZ32068.1| DNA polymerase III gamma and tau [Brucella sp. 83/13]
 gi|306404961|gb|EFM61246.1| DNA polymerase III, subunits gamma and tau [Brucella sp. NF 2653]
          Length = 602

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 89/248 (35%), Gaps = 25/248 (10%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+   +  GQ      L+   E  +         +  G  G+GKTT A+++AR L
Sbjct: 14  ARKYRPQNFNDLIGQEPMVRTLRNAFETGRIAQAW----MLTGVRGVGKTTTARILARAL 69

Query: 79  GVNFRSTSGPVI--AKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
                +   P I  +  G+    +      DV+ +D      I  +  I+E++ Y  +  
Sbjct: 70  NYKTDTVDQPTIDLSTPGEHCQAIMEGRHVDVIEMDAASHTGIDDIREIIEQVRYRPVSA 129

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT +  +   +  R      L  
Sbjct: 130 RYKVYIIDEVHMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKVPITVLSRCQ-RFDLRR 188

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            E   L   ++R A+   + V D +   IA    G+ R +  +     D A    A ++T
Sbjct: 189 IESGTLAQHLRRIAEAEKIKVDDASLAMIARAGEGSARDSLSIF----DQAIAHGAGSVT 244

Query: 243 REIADAAL 250
            E   + L
Sbjct: 245 AEAVRSML 252


>gi|149186799|ref|ZP_01865109.1| DNA polymerase III subunits gamma and tau [Erythrobacter sp. SD-21]
 gi|148829466|gb|EDL47907.1| DNA polymerase III subunits gamma and tau [Erythrobacter sp. SD-21]
          Length = 612

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 58/295 (19%), Positives = 101/295 (34%), Gaps = 25/295 (8%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
                      RP+T  E  GQ      L      A AR       L  G  G+GKT+ A
Sbjct: 75  AQPYRVLARKYRPQTFAELIGQDAMVRTL----ANAIARDRLAHAFLMTGVRGVGKTSTA 130

Query: 72  QVVARELGV-NFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-------EIHRLSIIVEE 123
           +++A+ L         GP I+  G         E R +  I+        +  +  I+E 
Sbjct: 131 RLIAKALNCIGPDGEGGPTISPCGVCEPCTAIAEGRHIDVIEMDAASHTGVDDVREIIEA 190

Query: 124 ILYPAMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRF 174
           + Y A+       ++ E             ++++   +    + ATT V  L   +  R 
Sbjct: 191 VRYAAVSARYKIYIIDEVHMLSRNAFNALLKTLEEPPAHVKFLFATTEVDKLPVTVLSRT 250

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
                L    +E L+       +  G+   DEA    A  + G+ R    +L +    A+
Sbjct: 251 Q-RFDLRRIPVELLEAHFAEICRKEGVEAEDEALHIAANAAEGSVRDGLSILDQAIAHAD 309

Query: 235 VAHAKTITREIADAAL---LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETIS 286
           +     +T +     L    R A  ++    LD      +A       +G+E ++
Sbjct: 310 MDTGGKVTADRVRDMLGLADRGAQRRLFAHILDGDAKAALAAVDDQYALGVEPLA 364


>gi|21910574|ref|NP_664842.1| DNA polymerase III subunits gamma and tau [Streptococcus pyogenes
           MGAS315]
 gi|21904775|gb|AAM79645.1| DNA polymerase III gamma/tau subunits [Streptococcus pyogenes
           MGAS315]
          Length = 556

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 56/304 (18%), Positives = 99/304 (32%), Gaps = 48/304 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     R +T +E  GQ    + LK  +E+ K         LF GP G GKT+ A++ A+
Sbjct: 4   ALYRKYRSQTFDEMVGQSVISTTLKQAVESGKISHAY----LFSGPRGTGKTSAAKIFAK 59

Query: 77  ELGVNFR---------------------------STSGPVIAKAGDLAALLTNLEDR--- 106
            +    +                           + S   + +  D+    T    R   
Sbjct: 60  AMNCPNQVDGEPCNQCDICRDITNGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSRATY 119

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDFQ--LDLMVGEGPSARSVKINLSRFTLIAATTRVG 164
            V  IDE+H LS      L   +E+    +  ++      +     LSR           
Sbjct: 120 KVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKQ 179

Query: 165 LLTNPLQDRFGIPIRLN--FYEIEDLKTIVQRGAKLTGLA-VTDEAACEIAMRSRGTPRI 221
                +++     +      YE++ L  I +R       A    + A  ++  ++ T  I
Sbjct: 180 ---KAIREHLAWVLDKEGIAYEVDALNLIARRAEGGMRDALSILDQALSLSPDNQVTIAI 236

Query: 222 AGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDL------RYLTMIARNF 275
           A  +   +   A   + + +++E A  AL  L         +         YL  +    
Sbjct: 237 AEEITGSISMLALGDYVRYVSQEQATQALAALETIYDSGKSMSRFATDLLTYLRDLLVVK 296

Query: 276 GGGP 279
            GG 
Sbjct: 297 AGGD 300


>gi|303325567|ref|ZP_07356010.1| DNA polymerase III, gamma and tau subunits [Desulfovibrio sp.
           3_1_syn3]
 gi|302863483|gb|EFL86414.1| DNA polymerase III, gamma and tau subunits [Desulfovibrio sp.
           3_1_syn3]
          Length = 633

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 47/254 (18%), Positives = 77/254 (30%), Gaps = 25/254 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           +  +  RP+T  +  GQ    + L      A A        L  G  G+GKTT+A++ A+
Sbjct: 5   SLAARYRPQTFAQVAGQDMVKAVLSR----AAAEDRPAAAYLLSGTRGVGKTTIARIFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL-----YPAMED 131
            L         P   +      +       DV  ID     S+     L     Y  ME 
Sbjct: 61  ALNCEHAPGPEP-CNECAQCRKITQGAHV-DVTEIDGASNNSVEDARSLRETIGYAPMEG 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++    R   I ATT        +  R         
Sbjct: 119 RYKIFIIDEAHMLTRNAFNALLKTLEEPPERVVFIFATTEAHKFPVTIVSRCQ-HFVFRH 177

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
              + L   +    +       + A   +A R+ G+ R    LL    D A      ++T
Sbjct: 178 LSEDALAEHLSSVLRKEKTEFEEGAVRLLARRAAGSVRDGMSLL----DQALALGGASLT 233

Query: 243 REIADAALLRLAID 256
                  L     +
Sbjct: 234 TAATREVLGLAGQE 247


>gi|295402712|ref|ZP_06812654.1| DNA polymerase III, subunits gamma and tau [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312109169|ref|YP_003987485.1| DNA polymerase III subunits gamma/tau [Geobacillus sp. Y4.1MC1]
 gi|294975243|gb|EFG50879.1| DNA polymerase III, subunits gamma and tau [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311214270|gb|ADP72874.1| DNA polymerase III, subunits gamma and tau [Geobacillus sp.
           Y4.1MC1]
          Length = 561

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 83/234 (35%), Gaps = 25/234 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RP+   +  GQ      L    ++A  + +     LF GP G GKT+ A++ A+
Sbjct: 5   ALYRVFRPQRFADVVGQEHVTKTL----QSALLQNKISHAYLFSGPRGTGKTSAAKIFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAAL--LTNLEDRDVLFIDEIHR-----LSIIVEEILYPAM 129
            +         P      +  A   +TN    DVL ID         +  I +++ +   
Sbjct: 61  AVNCEH----APTAEPCNECPACIGITNGTIPDVLEIDAASNNRVDEIRDIRDKVKFAPT 116

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                  ++ E             ++++        I ATT    +   +  R       
Sbjct: 117 SVRYKVYIIDEVHMLSIGAFNALLKTLEEPPKHVIFILATTEPHKIPLTIISRCQ-RFDF 175

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
               +  +   ++   +  G+  +DEA   IA  + G  R A  LL +   F++
Sbjct: 176 RRIPLHSIVARLRHVMEQQGMTASDEALFAIARAADGGMRDALSLLDQAISFSD 229


>gi|94990691|ref|YP_598791.1| DNA polymerase III subunits gamma and tau [Streptococcus pyogenes
           MGAS10270]
 gi|94544199|gb|ABF34247.1| DNA polymerase III subunit gamma/tau [Streptococcus pyogenes
           MGAS10270]
          Length = 556

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 56/304 (18%), Positives = 99/304 (32%), Gaps = 48/304 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     R +T +E  GQ    + LK  +E+ K         LF GP G GKT+ A++ A+
Sbjct: 4   ALYRKYRSQTFDEMVGQSVISTTLKQAVESGKISHAY----LFSGPRGTGKTSAAKIFAK 59

Query: 77  ELGVNFR---------------------------STSGPVIAKAGDLAALLTNLEDR--- 106
            +    +                           + S   + +  D+    T    R   
Sbjct: 60  AMNCPNQVDGEPCNQCDICRDITNGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSRATY 119

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDFQ--LDLMVGEGPSARSVKINLSRFTLIAATTRVG 164
            V  IDE+H LS      L   +E+    +  ++      +     LSR           
Sbjct: 120 KVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKQ 179

Query: 165 LLTNPLQDRFGIPIRLN--FYEIEDLKTIVQRGAKLTGLA-VTDEAACEIAMRSRGTPRI 221
                +++     +      YE++ L  I +R       A    + A  ++  ++ T  I
Sbjct: 180 ---KAIREHLAWVLDKEGIAYEVDALNLIARRAEGGMRDALSILDQALSLSPDNQVTIAI 236

Query: 222 AGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDL------RYLTMIARNF 275
           A  +   +   A   + + +++E A  AL  L         +         YL  +    
Sbjct: 237 AEEITGSISMLALGDYVRYVSQEQATQALAALETIYDSGKSMSRFATDLLTYLRDLLVVK 296

Query: 276 GGGP 279
            GG 
Sbjct: 297 AGGD 300


>gi|56750639|ref|YP_171340.1| DNA polymerase III subunits gamma and tau [Synechococcus elongatus
           PCC 6301]
 gi|81299721|ref|YP_399929.1| DNA polymerase III, tau subunit [Synechococcus elongatus PCC 7942]
 gi|56685598|dbj|BAD78820.1| DNA polymerase III gamma and tau subunits [Synechococcus elongatus
           PCC 6301]
 gi|81168602|gb|ABB56942.1| DNA polymerase III, tau subunit [Synechococcus elongatus PCC 7942]
          Length = 652

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 85/230 (36%), Gaps = 23/230 (10%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +      RP+   +  GQ      L      A A+       LF GP G GKT+ A+++A
Sbjct: 4   EPLHHKYRPQCFADLVGQEAIARTLSQ----ALAQQRIAPAYLFTGPRGTGKTSSARILA 59

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDR--DVLFID-----EIHRLSIIVEEILYPA 128
           +   +N + ++ P  +  G+  A          DV+ ID      +  +  ++E   +  
Sbjct: 60  KS--LNCQQSTVPTASPCGECEACRAIARGNALDVIEIDAASNTGVDNIRELIERAQFAP 117

Query: 129 MEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           ++      ++ E             ++++    R   + ATT    +   +  R      
Sbjct: 118 VQCRFKVYVIDECHMLSTAAFNALLKTLEEPPDRVVFVLATTDPQRVLPTIISRCQ-RFD 176

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
                ++ +   +Q  A+   + +   A   +A  ++G  R A  LL ++
Sbjct: 177 FRRIPLQAMTDHLQVIAQKESIEIEPTAIALVAQLAQGGLRDAESLLDQL 226


>gi|322828516|gb|EFZ32279.1| replication factor C, subunit 4, putative [Trypanosoma cruzi]
          Length = 340

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 51/301 (16%), Positives = 95/301 (31%), Gaps = 61/301 (20%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+++E+  G  +A S L+V      ++   L ++L  GPPG GKTT    +AR
Sbjct: 7   PWVEKYRPKSMEDIVGNADAVSRLRVI-----SKEGNLPNLLLCGPPGTGKTTSVLCLAR 61

Query: 77  -------------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDR----------- 106
                              EL  +       V  K    A     L  +           
Sbjct: 62  TLLSDQDGGDTTALKEAVLELNASDDRGLDVVREKIKLFAQTKKTLPQKVNESSQQKINL 121

Query: 107 -DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
             ++ +DE   ++   ++ L                   R+++++ S      A      
Sbjct: 122 HKIVILDEADSMTPAAQQALR------------------RTMELHSSTTRFAFACNNSHK 163

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           +  P+Q R  +         + LK  +    +   +  TD+    +   + G  R A   
Sbjct: 164 IIEPIQSRCAVVRFKKLTHADILKR-LTYIIQQENVTYTDDGLEALLYLAEGDLRSAVNA 222

Query: 226 LRRVRD-FAEVAHAKTITREIADAALLRLAIDKMGFDQLDL-----RYLTMIARNFGGGP 279
           L+  +  +  V              LL  +I      + DL         ++ R +    
Sbjct: 223 LQATQSGYGMVNAENVFKVCDQPHPLLVESIMDGCLQKKDLPSAHKELQRLLGRGYAASD 282

Query: 280 V 280
           V
Sbjct: 283 V 283


>gi|299542068|ref|ZP_07052384.1| DNA polymerase III subunit gamma/tau [Lysinibacillus fusiformis
           ZC1]
 gi|298725383|gb|EFI66031.1| DNA polymerase III subunit gamma/tau [Lysinibacillus fusiformis
           ZC1]
          Length = 595

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 75/247 (30%), Gaps = 59/247 (23%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP++  E +GQ      L+  + A K         LF GP G GKT+ A++ A+ L    
Sbjct: 11  RPQSFREMSGQTHVKRTLQNALLANKTTHAY----LFSGPRGTGKTSTAKIFAKALNCEH 66

Query: 83  ------------------------RSTSGPVIAKAGDLAALLTNLE------DRDVLFID 112
                                           ++  ++  ++  +          V  ID
Sbjct: 67  APSKEPCNECATCISITDGSHPDVIEFDAASNSRVEEIRDIIEKVRFAPASSRYKVYIID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS      L   +E+                         I ATT    L   +  
Sbjct: 127 EVHMLSTSAFNALLKTLEE------------------PPPHAVFILATTEPHKLPATIIS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQR---GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           R            +    I++R     +   L   ++    IA  + G  R A  LL +V
Sbjct: 169 RCQRFDFKRLSTND----IIERMKVVLEDIDLPYEEQGLKVIAQSAAGGMRDALSLLDQV 224

Query: 230 RDFAEVA 236
             F+   
Sbjct: 225 VSFSGEK 231


>gi|295658083|ref|XP_002789604.1| replication factor C subunit 3 [Paracoccidioides brasiliensis Pb01]
 gi|226283157|gb|EEH38723.1| replication factor C subunit 3 [Paracoccidioides brasiliensis Pb01]
          Length = 404

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 77/226 (34%), Gaps = 13/226 (5%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
                   +   RP +LE+ +G  +    +  FI++ +     L H+L  GPPG GKT+ 
Sbjct: 40  EAEDNMPWVEKYRPNSLEDVSGHHDVIGTINTFIDSNR-----LPHLLLYGPPGTGKTST 94

Query: 71  AQVVAR------ELGVNFRSTSGPVIAKAGDLAALLTN-LEDRDVLFIDEIHRLSIIVEE 123
              +AR       +       +         +   +      + +  +  + +    +  
Sbjct: 95  ILALARRIYGAKNMRQMVLELNASDDRGIDVVRDQIKTFASTKQIFSVAPVAKSESSLGA 154

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
                +++        +    R ++   +             L+  L  R     R +  
Sbjct: 155 FKLIILDEADAMTATAQMALRRIMEKYTANARFCIIANYTHKLSPALLSRC-TRFRFSPL 213

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           + +D++ +V +  +   + +  EA   +   S+G  R A  +L+  
Sbjct: 214 KEKDIRALVNQVIEKEQVRIQPEAIDSLVELSKGDMRRALNVLQAC 259


>gi|159484076|ref|XP_001700086.1| DNA replication factor C complex subunit 2 [Chlamydomonas
           reinhardtii]
 gi|158272582|gb|EDO98380.1| DNA replication factor C complex subunit 2 [Chlamydomonas
           reinhardtii]
          Length = 340

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 75/228 (32%), Gaps = 38/228 (16%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   +   RP+ + E  G  EA + L+V  E        + +V+  GPPG GKTT    +
Sbjct: 22  ELPWLEKYRPQFINEIVGNTEAVARLQVIAEEG-----NMPNVILSGPPGTGKTTSILCL 76

Query: 75  AR------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIHRLSII 120
           A             EL  +       V  K    A     L      ++ +DE   ++  
Sbjct: 77  AHQLLGPNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTAG 136

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            ++ L   ME     +  G    A              A      +  P+Q R  I    
Sbjct: 137 AQQALRRTME-----IYSGTTRFA-------------LACNMSSKIIEPIQSRCAIVRYT 178

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
              + + L   ++  A+  G+   D     +   + G  R A   ++ 
Sbjct: 179 RIPDEDILAR-MRLVAEKEGVTYNDAGMEAVIFTADGDMRQALNNMQA 225


>gi|195012119|ref|XP_001983484.1| GH15919 [Drosophila grimshawi]
 gi|193896966|gb|EDV95832.1| GH15919 [Drosophila grimshawi]
          Length = 331

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 51/283 (18%), Positives = 93/283 (32%), Gaps = 40/283 (14%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M      +  +       I   RP   EE  G  +  + L VF     +      +++  
Sbjct: 1   MPAEPETVVADKRNNLPWIEKYRPVKFEEIVGNEDTVARLSVF-----STQGNSPNIIIA 55

Query: 61  GPPGLGKTTLAQVVAR------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDR 106
           GPPG+GKTT  Q +AR            EL  +       V  K    A     L     
Sbjct: 56  GPPGVGKTTTIQCLARILLGDSYKDAVLELNASNERGIDVVRNKIKMFAQQKVTLPRGRH 115

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
            ++ +DE   ++   ++ L   ME +                 N +RF L   T+    +
Sbjct: 116 KIVILDEADSMTEGAQQSLRRTMEIYS----------------NTTRFALACNTSE--KI 157

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA-GRL 225
             P+Q R  +       + + L  +++   +L  L   ++    I   ++G  R     L
Sbjct: 158 IEPIQSRCAMLRFTKLSDAQVLAKLIE-VCQLEKLKYDEDGLEAIVFTAQGDMRQGLNNL 216

Query: 226 LRRVRDFAEVAHAKTI-TREIADAALLRLAIDKMGFDQLDLRY 267
               + F ++         +     LL+  +     + +   Y
Sbjct: 217 QSTAQGFGDITGTNVFKVCDEPHPMLLQDMLQHCAANDIHKAY 259


>gi|71906445|ref|YP_284032.1| AAA ATPase, central region [Dechloromonas aromatica RCB]
 gi|71846066|gb|AAZ45562.1| AAA ATPase, central region [Dechloromonas aromatica RCB]
          Length = 537

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 56/301 (18%), Positives = 86/301 (28%), Gaps = 72/301 (23%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPR      GQ          +  A +        LF G  G+GKTTLA+++A+ L    
Sbjct: 11  RPRNFSTLVGQEHVV----RALTHALSEQRLHHAYLFTGTRGVGKTTLARILAKSLNCET 66

Query: 83  ------------------------RSTSGPVIAKAGDLAALLTNL------EDRDVLFID 112
                                            +  ++  LL N           V  ID
Sbjct: 67  GITATPCGTCSACQEIDSGRFVDLLEVDAATNTRVDEMRQLLENAVYAPTRGRFKVYVID 126

Query: 113 EIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           E+H LS      +   +E+    +  ++      +     LSR                 
Sbjct: 127 EVHMLSNSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQ-------------- 172

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
              F +           L  I+Q      G+     A   +A  + G+ R A  LL    
Sbjct: 173 ---FNLKQMPVLAITGHLGHILQ----AEGIPFDQPALALVARSAAGSMRDALSLL---- 221

Query: 231 DFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGG-GPVGIETISAGL 289
           D A    A  +      + L  +  D          YL  I     G  P  +  ++A L
Sbjct: 222 DQAIAHGAGRVEEAQVRSMLGTVDQD----------YLFTILEALHGAEPSALLQVAADL 271

Query: 290 S 290
            
Sbjct: 272 G 272


>gi|30468153|ref|NP_849040.1| cell division protein ftsH homolog [Cyanidioschyzon merolae strain
           10D]
 gi|14423723|sp|Q9TJ83|FTSH_CYAME RecName: Full=ATP-dependent zinc metalloprotease FtsH; AltName:
           Full=FtsHCP
 gi|6539506|dbj|BAA88165.1| FtsH (FtsHcp) [Cyanidioschyzon merolae]
 gi|30409253|dbj|BAC76202.1| cell division protein ftsH homolog [Cyanidioschyzon merolae strain
           10D]
          Length = 603

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 62/273 (22%), Positives = 98/273 (35%), Gaps = 23/273 (8%)

Query: 27  LEEFTGQVEACSNLKVFIEAAKARAEAL-------DHVLFVGPPGLGKTTLAQVVARELG 79
            ++  G  EA   L   +   K  ++ L         VL VGPPG GKT LA+ +A E  
Sbjct: 153 FDDVAGIEEAKEELAEVVAFLKNPSKFLAVGASIPKGVLLVGPPGTGKTLLAKAIAGEAS 212

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMED 131
           V F S SG           A  +  L    +     ++FIDEI  +       +    ++
Sbjct: 213 VPFFSISGSEFVEMFVGVGASRVRDLFKKAKQNAPCLVFIDEIDAVGRQRGAGIGGGNDE 272

Query: 132 FQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            +  L  ++ E               +IAAT RV +L   L    RF   I ++  +++ 
Sbjct: 273 REQTLNQLLTEMDGFEGNTG----VIVIAATNRVDVLDAALLRPGRFDRQIMVSMPDVKS 328

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
              I++  A    L             +         LL      A     K IT +  D
Sbjct: 329 RIAILKVHANQKKLHPQVSLEAVARRTAGFAGADLANLLNEAAILAVRRGLKQITWKEID 388

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV 280
            A+ R+     G   +D +   +IA +  G  +
Sbjct: 389 DAIDRVIAGMEGTPIMDGKIKRLIAYHETGHAL 421


>gi|302348724|ref|YP_003816362.1| Replication factor C large subunit [Acidilobus saccharovorans
           345-15]
 gi|302329136|gb|ADL19331.1| Replication factor C large subunit [Acidilobus saccharovorans
           345-15]
          Length = 484

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 87/229 (37%), Gaps = 24/229 (10%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAA-KARAEALDHVLFVGPPGLGKTT 69
           ++ Q    I   RP+++ +   Q EA S    ++EA  K R       L  GPPG+GKT+
Sbjct: 2   SLQQRIPWIIKYRPKSVNDVVDQEEAKSQFLTWLEAWLKGRPPEKRAALLYGPPGVGKTS 61

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLT-NLEDRD------VLFIDEIHRLSIIVE 122
           L +  A +  +     +     +A D+   +      R       ++ +DE+  +S    
Sbjct: 62  LVEAAAHDYKLEVLELNASDYRRAEDIRRTVGVAAFRRPLTGRLMIILMDEVDGISAKG- 120

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                  +   LD ++   P+A++         ++ A         PL++   + I    
Sbjct: 121 -------DAGGLDELLRIIPNAQNP-------IVLTANDPWKDQLRPLRE-VTLMIEFKN 165

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
               ++ +++Q       +    EA   IA ++ G  R     L  V +
Sbjct: 166 LSTGNVVSLLQNICDREHIECDREALRYIADKNAGDVRACVNDLEAVAE 214


>gi|188589354|ref|YP_001922591.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum E3
           str. Alaska E43]
 gi|188499635|gb|ACD52771.1| DNA polymerase III, gamma and tau subunit [Clostridium botulinum E3
           str. Alaska E43]
          Length = 546

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 47/243 (19%), Positives = 86/243 (35%), Gaps = 27/243 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T  +  GQ    + LK      +   + + H  LF G  G GKT+ A+V+A+ L   
Sbjct: 11  RPKTFNDVVGQEHITTTLK-----NEILNDRIAHAYLFCGTRGTGKTSTAKVMAKALNCF 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHR-----LSIIVEEILYPAMEDFQLDL 136
                 P      ++   +      DV  +D         +  I+++  YP  E      
Sbjct: 66  NLQDGEPCNEC--EMCKKINEGLSMDVTELDAASNNGIDRIRDIIDDTKYPPQEGKYKIY 123

Query: 137 MVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ++ E             ++++   S    I ATT    L   +  R          + E 
Sbjct: 124 ILDEVHMLSGGAVNAFLKTLEEPPSNVIFILATTDPQKLPITILSRCQRFDFKRINQKE- 182

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           +   +++  +   + V D++   IA  + G  R +  +L    D A       I  +   
Sbjct: 183 IADRLRKITEAQNVNVDDKSLDLIARVADGAMRDSLSIL----DQAIAMGDNNIKYDDLI 238

Query: 248 AAL 250
           + L
Sbjct: 239 SIL 241


>gi|146417537|ref|XP_001484737.1| hypothetical protein PGUG_02466 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 819

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 56/250 (22%), Positives = 90/250 (36%), Gaps = 24/250 (9%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLED 105
           E    VL  GPPG GKTT+A  +A EL V F + S P +           L  +    + 
Sbjct: 219 EPPRGVLLYGPPGCGKTTIANALAGELKVPFLNISAPSVVSGMSGESEKKLREIFDEAKS 278

Query: 106 RD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
               ++FIDEI  ++   +      ME   +  ++         K +     +I AT R 
Sbjct: 279 LAPCLVFIDEIDAITPKRDGGAQREMERRIVAQLLTLMDELSLSKTDGKAVIVIGATNRP 338

Query: 164 GLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRI 221
             L + L+   RF   I LN        +I++  A    L + D  +      S+ TP  
Sbjct: 339 DSLDSALRRAGRFDREICLNVPGEAQRCSILK--AMTKQLKLQDPDSFNFVELSKRTPGY 396

Query: 222 AGRLLRRVRDFAEV------------AHAKTITREIADAALLRLAIDKMGFDQLDLRYLT 269
            G  L+ +   A +              A+ ++ E+    L           + +   L+
Sbjct: 397 VGADLKSLVTAAGISAIKRIFESLSEHEAELLSNEVNSMDLEMETDKSNFDSKSEAEKLS 456

Query: 270 MIARNFGGGP 279
            I R     P
Sbjct: 457 TIQRFLMQHP 466



 Score = 50.1 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 70/223 (31%), Gaps = 20/223 (8%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLED 105
           K    A   VL  GPPG GKT LA+ VA E   NF S  GP +     G+    +  L  
Sbjct: 537 KVGITAPAGVLMWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESEKAVRQLFQ 596

Query: 106 RD------VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA 159
           R       ++F DE+  L     +          ++ ++ E         +     ++ A
Sbjct: 597 RARASVPCIIFFDELDALVPRR-DTSLSESSSRVVNTLLTE----LDGLNDRKGIFVVGA 651

Query: 160 TTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQ---RGAKLTGLAVTDEAACEIAMR 214
           T R  ++   +    R    + +      +   I+Q   R       +  D        R
Sbjct: 652 TNRPDMIDPAMLRPGRLDKTLYIELPSSAERLEILQTLVRACGTPLASSVDLHTIAYDER 711

Query: 215 SRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257
            R         L  VR+   VA  K          L       
Sbjct: 712 CRNFSGADLSSL--VREAGVVALKKKFFHGQNIKDLDASGYYD 752


>gi|121728180|ref|ZP_01681215.1| cell division inhibitor [Vibrio cholerae V52]
 gi|121629577|gb|EAX62000.1| cell division inhibitor [Vibrio cholerae V52]
          Length = 540

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 52/265 (19%), Positives = 83/265 (31%), Gaps = 57/265 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP    E  GQ    + L    E A A+       LF G  G+GKTT+ ++ A+ L    
Sbjct: 11  RPTRFSEVVGQSHVLTAL----ENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCET 66

Query: 83  ------------------------RSTSGPVIAKAGDLAALLTNLEDRD------VLFID 112
                                            K  D   LL N++ +       V  ID
Sbjct: 67  GITATPCGQCATCQEIDQGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRFKVYLID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS      L   +E+                         + ATT    L   +  
Sbjct: 127 EVHMLSRHSFNALLKTLEE------------------PPEYVKFLLATTDPQKLPVTILS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R  +   L    +++++  + +      +A  ++A   +A  + G+ R A  L     D 
Sbjct: 169 RC-LQFHLKPISVDNIQQQLDKVLHAEKIACDNKALNLLAHAADGSMRDALSL----TDQ 223

Query: 233 AEVAHAKTITREIADAALLRLAIDK 257
           A       +  +I    L  L  D 
Sbjct: 224 AIALGNGVVKSDIVAHMLGTLDTDH 248


>gi|238917931|ref|YP_002931448.1| DNA polymerase [Eubacterium eligens ATCC 27750]
 gi|238873291|gb|ACR73001.1| DNA polymerase [Eubacterium eligens ATCC 27750]
          Length = 561

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 81/224 (36%), Gaps = 21/224 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP    +  GQ    + L+  I A +         LF G  G GKT++A++ A+ +    
Sbjct: 27  RPDNFNDVKGQDTIVTTLRNQINADRIGHAY----LFCGTRGTGKTSVAKIFAKAVNCEH 82

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P   +     A+        V+ ID      +  +  I EE+ Y   E      +
Sbjct: 83  PVDGNP-CGECPTCKAIAAGTSMN-VIEIDAASNNGVDNIRQIREEVQYSPTEGRFKVYI 140

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++   +    I ATT V  +   +  R       +   IE +
Sbjct: 141 IDEVHMLSIGAFNALLKTLEEPPAYVIFILATTEVAKIPITILSRCQ-RYDFHRITIETI 199

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
              +    K  GL V D+A   +A  + G+ R A  LL +   F
Sbjct: 200 AGRLSELMKAEGLNVEDKAIKYVAKAADGSMRDALSLLDQCLAF 243


>gi|194706108|gb|ACF87138.1| unknown [Zea mays]
          Length = 331

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 76/226 (33%), Gaps = 38/226 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP  + +  G  +A + L+V      AR   + +++  GPPG GKTT    +A 
Sbjct: 14  PWVEKYRPSRVADVVGNSDAVARLEVI-----ARDGNMPNLILSGPPGTGKTTSILALAH 68

Query: 77  ------------ELGVNFRSTSGPVIAKAGDLA--ALLTNLEDRDVLFIDEIHRLSIIVE 122
                       EL  +       V  K    A   +        ++ +DE   ++   +
Sbjct: 69  ELLGPSYRDAVLELNASDDRGLDVVRNKIKMFAQKKVTLQPGRHKIVILDEADSMTSGAQ 128

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           + L   ME +                 N +RF L   T+    +  P+Q R  I      
Sbjct: 129 QALRRTMEIYS----------------NTTRFALACNTS--SKIIEPIQSRCAIVRFSRL 170

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            + E L  ++   A    +    E    I   + G  R A   L+ 
Sbjct: 171 SDQEILGRLMIVVAAE-KVPYAPEGLEAIIFTADGDMRQALNNLQA 215


>gi|73668390|ref|YP_304405.1| replication factor C small subunit 2 [Methanosarcina barkeri str.
           Fusaro]
 gi|72395552|gb|AAZ69825.1| replication factor C subunit [Methanosarcina barkeri str. Fusaro]
          Length = 340

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 69/320 (21%), Positives = 119/320 (37%), Gaps = 44/320 (13%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           +D      R  TL+E  G   A + L        A++  L H++F GP   GKTT A  +
Sbjct: 2   QDLWTLKYRAGTLKEMLGNEHAVATLSEL-----AQSGTLPHLIFYGPENSGKTTAALAL 56

Query: 75  ARE-LGVNFRSTSGPVIAK-AGDLAALLTNLEDRDVLFI--DEIHRLSIIVEEILYPAME 130
           AR+  G  +++      A    D        + R V F+  D+  ++   V +I    + 
Sbjct: 57  ARQLYGRTWKNNFAYFNASDFFDQGKRYLVRDKRFVRFLGTDDPKKIYKSVIDIFKEIIN 116

Query: 131 ----------DFQLDLMVGEGPSARSVKINLSR--------FTLIAATTRVGLLTNPLQD 172
                     D++L  +          +  L R           I +TT+   L  PL+ 
Sbjct: 117 EYAGIASLDADYKLIYIDNAESLNSDAQHALRRIMEKYSATCRFILSTTKPSKLIAPLRS 176

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R G+ I   +     LKT +++      L +++ A   I   ++G    A + L+     
Sbjct: 177 R-GLQIFFTYVPDSVLKTHLKKIGCAEKLQLSEGAFDAILYSAKGNVAKAVQTLQLA--- 232

Query: 233 AEVAHAKTITREIADAALLRLAIDKM--------GFDQLDLRYLTMIARNFGGGPVG--- 281
           + VAH   IT E+   A L    +          G      + L  +    G G +G   
Sbjct: 233 SLVAHGSVITEEMVYEATLGRDENIDNLLSAALAGDFPRGRKLLDEMI--VGKGLLGVEI 290

Query: 282 IETISAGLSEPRDAIEDLIE 301
           +E +S  L++  +   D+  
Sbjct: 291 LEGLSEALADSGETDTDIAR 310


>gi|327329176|gb|EGE70936.1| DNA polymerase III subunit gamma [Propionibacterium acnes HL103PA1]
          Length = 948

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 47/237 (19%), Positives = 74/237 (31%), Gaps = 23/237 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T +E  G+      LK  I   +         LF GP G GKTT A+++AR
Sbjct: 100 ALYRRYRPETFDEIIGEDHVIEPLKRAILNNRVNHAY----LFSGPRGCGKTTTARILAR 155

Query: 77  ELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAM 129
            L      T  P        DLA         DV+ ID      +     + E   +  +
Sbjct: 156 ALNCEQGPTPTPCGTCQSCRDLAC--GGPGSIDVIEIDAASHGGVDDARDLRERAFFAPV 213

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                  ++ E             + V+        I ATT    +   ++ R       
Sbjct: 214 HSRYKIYIIDEAHMVTPQGFNALLKLVEEPPPHVKFIFATTEPEKVIGTIRSR-THHYPF 272

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                + L   +       G+ V       +     G+ R +  +L ++   A   H
Sbjct: 273 RLVPPKVLVDYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVLDQLLGGAADGH 329


>gi|297621642|ref|YP_003709779.1| DNA polymerase III, gamma and tau subunits [Waddlia chondrophila
           WSU 86-1044]
 gi|297376943|gb|ADI38773.1| DNA polymerase III, gamma and tau subunits [Waddlia chondrophila
           WSU 86-1044]
          Length = 452

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 51/254 (20%), Positives = 81/254 (31%), Gaps = 54/254 (21%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +++        RP+T  E  GQ    + LK      K R  A    LF G  G GKTTLA
Sbjct: 1   MTEYQVLARKYRPQTFREVLGQDAIVATLK---NGIKKRRMA-HAYLFSGSRGTGKTTLA 56

Query: 72  QVVARELGVNFRST-------------------------SGPVIAKAGDLAALLTNLEDR 106
           ++ A+ L     S                           G       D+  +   +   
Sbjct: 57  RLFAKALNCQAPSNDCEPCNACSSCKEIAAGSSLDVLEVDGASNRGIDDIRQINETVGYS 116

Query: 107 D------VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAAT 160
                  +  IDE+H L+      L   +E+                     +     AT
Sbjct: 117 TASGRYKIYIIDEVHMLTKEAFNALLKTLEE------------------PPEKVKFFFAT 158

Query: 161 TRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPR 220
           T    +   +  R      LN    + +   ++R  +  G    ++A   +A R+ G  R
Sbjct: 159 TEPHKVLPTILSRCQ-RFNLNRIPQDSIIGKLKRMTEEQGFQADEDALRLVANRADGGLR 217

Query: 221 IAGRLLRRVRDFAE 234
            A  LL ++  F E
Sbjct: 218 DAESLLDQILSFHE 231


>gi|301094042|ref|XP_002997865.1| replication factor C subunit 2 [Phytophthora infestans T30-4]
 gi|262109788|gb|EEY67840.1| replication factor C subunit 2 [Phytophthora infestans T30-4]
          Length = 327

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 51/266 (19%), Positives = 93/266 (34%), Gaps = 40/266 (15%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   +   RPR L +  G  +  ++L+     A A+A  + +++  GPPG GKTT    +
Sbjct: 6   EAPWVEKYRPRVLADVVGNRDTIASLQ-----AMAKAGNMTNLILSGPPGTGKTTSILCL 60

Query: 75  AR------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIHRLSII 120
           AR            EL  +       V +K    A     L      ++ +DE   ++  
Sbjct: 61  ARELLGTSLKQAVLELNASDDRGINTVRSKIKMFAQQKVTLPPGRHKIVILDEADSMTAA 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            ++ L   ME F                   +RF    A      +  P+Q R  I    
Sbjct: 121 AQQALRRTMEIFSAT----------------TRF--ALACNNSTKIIEPIQSRCAILRFT 162

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD-FAEVAHAK 239
              +   L+ ++    +   +   +E    +   + G  R A   L+     F+ V+   
Sbjct: 163 RLPDEMLLRRLLT-VCQEENVGYKEEGLAALIFTAEGDMRNALNNLQATASGFSFVSDEN 221

Query: 240 TI-TREIADAALLRLAIDKMGFDQLD 264
                +    A++R  ++     +LD
Sbjct: 222 VFKVCDQPHPAVVREILNHCAKGELD 247


>gi|171463557|ref|YP_001797670.1| ATP-dependent metalloprotease FtsH [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171193095|gb|ACB44056.1| ATP-dependent metalloprotease FtsH [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 621

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 55/249 (22%), Positives = 94/249 (37%), Gaps = 23/249 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAK------ARAEALDH-VLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  EA   +   ++  K           + H VL VGPPG GKT LA+ +A E 
Sbjct: 148 TFADVAGCDEAKEEVFELVDFLKDPQKFQKLGGRIPHGVLLVGPPGTGKTLLARAIAGEA 207

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  +  N +     ++FIDEI  +       +    +
Sbjct: 208 KVPFFSISGSDFVEMFVGVGASRVRDMFENAKKNSPCIIFIDEIDAVGRHRGAGMGGGND 267

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  M+ E     S     S   ++AAT R  +L   L    RF   + +   +I 
Sbjct: 268 EREQTLNQMLVEMDGFESN----SGVIVVAATNRSDVLDKALLRPGRFDRQVHVGLPDIR 323

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I+Q   +   +     AA         +      L+     FA   + +++  +  
Sbjct: 324 GREQILQVHMRKVPIDPDVNAAILARGTPGFSGADLANLVNEAALFAARRNKRSVDMKDF 383

Query: 247 DAALLRLAI 255
           + A  ++ +
Sbjct: 384 EDAKDKIYM 392


>gi|148977687|ref|ZP_01814248.1| DNA polymerase III subunits gamma and tau [Vibrionales bacterium
           SWAT-3]
 gi|145963055|gb|EDK28324.1| DNA polymerase III subunits gamma and tau [Vibrionales bacterium
           SWAT-3]
          Length = 747

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 55/265 (20%), Positives = 90/265 (33%), Gaps = 35/265 (13%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP   +E  GQ    + L    E A ++       LF G  G+GKTT+ ++ A+ L    
Sbjct: 11  RPTKFKEVVGQAHVLTAL----ENALSQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCET 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILY------PAMEDFQL 134
             TS P     G+ A      E R  D+L ID   R  +     L       PA   F++
Sbjct: 67  GITSTP----CGECATCKEIDEGRFVDLLEIDAASRTKLEDTRELLDNVQYKPARGRFKV 122

Query: 135 DLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            L+               ++++        + ATT    L   +  R  +   L    ++
Sbjct: 123 YLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRC-LQFHLKPISVD 181

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           ++   +    +   +     A   IA  + G+ R A  L     D A       +  +  
Sbjct: 182 NIHEQLDHILEQEKVTSESRALGMIAHAADGSMRDALSL----TDQAIALGNGNVVTDTV 237

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMI 271
              L  L  D+       +  L  I
Sbjct: 238 AHMLGTLDTDQA------IHLLEAI 256


>gi|119897248|ref|YP_932461.1| DNA polymerase III subunit tau [Azoarcus sp. BH72]
 gi|119669661|emb|CAL93574.1| DNA polymerase III subunit Tau [Azoarcus sp. BH72]
          Length = 662

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 75/268 (27%), Gaps = 61/268 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN- 81
           RP++     GQ          +  A A        LF G  G+GKTT+++++A+ L    
Sbjct: 11  RPKSFGTLVGQEHVV----RALSHALATGRLHHAYLFTGTRGVGKTTISRILAKALNCET 66

Query: 82  -----------------------FRSTSGPVIAKAGDLAALLTNL------EDRDVLFID 112
                                  +            D+AALL             V  ID
Sbjct: 67  GVTAEPCGQCEACRAIDADRFPDYVEMDAASNRGVEDMAALLDKAVYAPVQGRYKVYMID 126

Query: 113 EIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           E+H L+      +   +E+    +  ++      +     LSR                 
Sbjct: 127 EVHMLTGHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPQG----- 181

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
                            +   + R      +     A   IA  + G+ R A  LL    
Sbjct: 182 ----------------HIVEHLDRVLTAEAVPFEPPALRHIAKAANGSMRDALSLL---- 221

Query: 231 DFAEVAHAKTITREIADAALLRLAIDKM 258
           D A    A  +  E     L  +  D +
Sbjct: 222 DQAIAHGAGKVAEEQVTHMLGTVGDDHL 249


>gi|157826506|ref|YP_001495570.1| DNA polymerase III subunits gamma and tau [Rickettsia bellii OSU
           85-389]
 gi|157801810|gb|ABV78533.1| DNA polymerase III subunits gamma and tau [Rickettsia bellii OSU
           85-389]
          Length = 508

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 47/245 (19%), Positives = 85/245 (34%), Gaps = 21/245 (8%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP +  E  GQ      L   I   +         L  G  G+GKTT A+++A+ +
Sbjct: 14  ARKYRPSSFAELHGQEVLVKVLSYTILNNRLAGGY----LLTGIRGVGKTTSARIIAKAV 69

Query: 79  GVNFRSTSGPVIAKAGDLAALLT--NLEDRDVLFIDEIHRLS-----IIVEEILYPAMED 131
             +   T    I         ++  N    D++ ID   + S      I+E   Y  ++ 
Sbjct: 70  NCSALITEDNNIKTCEQCVNCVSFNNHNHSDIIEIDAASKTSVDDIRRIIESAEYKPLQG 129

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT V  +   +  R      L  
Sbjct: 130 KYKIFIIDEVHMLSKGAFNALLKTLEEPPPHVIFIFATTEVQKIPATIISRCQ-RYDLKR 188

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
              E++  +++   K   L    EA   IA +S G+ R A  +L +    +  + +    
Sbjct: 189 LSFEEIFKLLEYIVKEENLKTDIEALRVIAYKSDGSARDAVSILDQAASLSAKSDSMITR 248

Query: 243 REIAD 247
           + I  
Sbjct: 249 QAINQ 253


>gi|83941620|ref|ZP_00954082.1| DNA polymerase III, gamma and tau subunits [Sulfitobacter sp.
           EE-36]
 gi|83847440|gb|EAP85315.1| DNA polymerase III, gamma and tau subunits [Sulfitobacter sp.
           EE-36]
          Length = 582

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 62/301 (20%), Positives = 106/301 (35%), Gaps = 33/301 (10%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T  +  GQ      LK   EA +         +  G  G GKTT A+++A+ +
Sbjct: 11  ARKYRPETFADLVGQDAMVRTLKNAFEADRIAQA----FIMTGIRGTGKTTTARIIAKGM 66

Query: 79  GV-NFRSTSGPVIAKAGDLAALLTNLEDR--DVLFID-----EIHRLSIIVEEILYPAME 130
                    GP     G     +  +E R  DV+ +D      +  +  I++ + Y A  
Sbjct: 67  NCIGPDGNGGPTTEPCGVCEHCVAIMEGRHVDVMEMDAASNTGVGNIREIIDSVHYRAAS 126

Query: 131 DFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
                 ++ E             ++++        I ATT +  +   +  R      L 
Sbjct: 127 ARYKVYIIDEVHMLSTGAFNALLKTLEEPPEHVKFIFATTEIRKVPVTVLSRCQ-RFDLR 185

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
             E E +  ++++ A   G  + ++A   I   + G+ R A  LL    D A    A   
Sbjct: 186 RIEPEVMIALMRKIATAEGAEIAEDALALITRAAEGSARDATSLL----DQAISHGAGET 241

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV-GIETISAGLSEPRDAIEDLI 300
           T     A L      ++  D  D     MI R    G +  +    +  ++P   + DL 
Sbjct: 242 TAVQVRAMLGLADRGRV-LDLFD-----MILRGDAAGALDELGNQYSDGADPMAVLRDLA 295

Query: 301 E 301
           E
Sbjct: 296 E 296


>gi|150019759|ref|YP_001312013.1| DNA polymerase III subunits gamma and tau [Clostridium beijerinckii
           NCIMB 8052]
 gi|149906224|gb|ABR37057.1| DNA polymerase III, subunits gamma and tau [Clostridium
           beijerinckii NCIMB 8052]
          Length = 548

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 81/229 (35%), Gaps = 23/229 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+  E+  GQ    + LK      +   + + H  LF G  G GKT+ A+V+A+ L   
Sbjct: 11  RPKNFEDVVGQEHITTTLK-----NEILNDRIAHAYLFCGTRGTGKTSTAKVMAKALNCL 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHR-----LSIIVEEILYPAMEDFQLDL 136
               +G    +      +   L   DV  +D         +  I+++  YP  E      
Sbjct: 66  DLQ-NGEPCNECEMCRKINEGLAI-DVTELDAASNNGIDKIRDIIDDTKYPPQEARYKIY 123

Query: 137 MVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ++ E             ++++    R   I ATT    L   +  R            ++
Sbjct: 124 IMDEVHMLSVGAVNAFLKTLEEPPKRVIFILATTDPQKLPITILSRCQ-RFDFKRISQKE 182

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
           + + +++     G+    ++   I+    G  R A  +L +     E  
Sbjct: 183 ISSRLKKITDSQGITYEQKSLDLISRVCDGAMRDALSILDQAIAMGEDK 231


>gi|150866631|ref|XP_001386295.2| AAA+-type ATPase [Scheffersomyces stipitis CBS 6054]
 gi|149387887|gb|ABN68266.2| AAA+-type ATPase [Scheffersomyces stipitis CBS 6054]
          Length = 788

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 57/260 (21%), Positives = 97/260 (37%), Gaps = 33/260 (12%)

Query: 20  SLLR------PRTL-EEFTGQVEACSNL----KVFIEAAKA----RAEALDHVLFVGPPG 64
           S +R      P+    +  GQ E    L    ++ +EAA +       A   VL  GPPG
Sbjct: 507 SAMREIFLEMPKVFWSDIGGQHELKQKLMEVVQLPLEAADSFKALGVSAPKGVLLYGPPG 566

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DVLFIDEIHR 116
             KT  A+ +A E G+NF +  GP I     G+    +  +  +       ++F DEI  
Sbjct: 567 CSKTLTAKALATESGLNFLAVKGPEIFNKYVGESERAIREIFRKARAAAPSIIFFDEIDA 626

Query: 117 LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RF 174
           +S   E     A +     L+             L    ++AAT +   +   L    R 
Sbjct: 627 ISGDRESASTSASQHVLTSLLNEIDGVEE-----LKGVVIVAATNKPTEIDPALLRPGRL 681

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRS--RGTPRIAGRLLRR-VRD 231
              I +   + E    I++ G+K   +   D    E+A+ +       +A       +  
Sbjct: 682 DRHIYVAPPDYEARLQILKNGSKKFNIVPEDVDLSELALLTDGCSGAEVALVCQEAGLAA 741

Query: 232 FAEVAHAKTITREIADAALL 251
             E  +A T+ ++  + AL 
Sbjct: 742 VMESRNASTVQKKHFEHALK 761



 Score = 53.9 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 75/213 (35%), Gaps = 16/213 (7%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI---------AKAGDLAALLTNLEDRD 107
           +L  GPPG GKT L + VA E   +  + +GP I             D+       +   
Sbjct: 290 ILLHGPPGTGKTMLLRCVASETNAHILTINGPSIVSKYLGETENAIRDIFIEARKYQP-S 348

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           ++F+DEI  L            E   +  ++           +  R  ++AAT R   + 
Sbjct: 349 IIFMDEIDSLVPSRNSDDSGETESRVVATLLT----MMDGMGDSGRIVVVAATNRPNSID 404

Query: 168 NPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
             L+   RF   + +   +++    I+ +       +  D +  +I + +  T    G  
Sbjct: 405 AALRRPGRFDQEVEIGIPDVDARTDILLKQFAKMNASKCDLSEDDITLVASKTHGYVGAD 464

Query: 226 LRRVRDFAEVAHAKTITREIADAALLRLAIDKM 258
           L  +   A +       +       L++ +  +
Sbjct: 465 LTALCREAVMKAIGRGLKAGIAQTQLKVNLQDL 497


>gi|146181988|ref|XP_001023745.2| ATPase, AAA family protein [Tetrahymena thermophila]
 gi|146143985|gb|EAS03500.2| ATPase, AAA family protein [Tetrahymena thermophila SB210]
          Length = 373

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 62/340 (18%), Positives = 108/340 (31%), Gaps = 35/340 (10%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M+ E       +     +   RP  +EE + Q E   +L+  +      +  L H++  G
Sbjct: 28  MEEETKTEELNNNLLPWVEKYRPNKIEEVSYQEEVIKSLQGVL-----LSGNLPHLILHG 82

Query: 62  PPGLGKTTLAQVVARE------LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIH 115
           PPG GKT+     A++              +         +   +     + V       
Sbjct: 83  PPGTGKTSSILAFAKQLYGPTFYKERILELNASDDRGIQIVRDKIKKFAQQVVS------ 136

Query: 116 RLSIIVEEILYPAMEDFQLDL---MVGEGPSA--RSVKINLSRFTLIAATTRVGLLTNPL 170
                 +    P  +   LD    M  E  SA  R ++   S          +  +  PL
Sbjct: 137 --KNPDKSFKCPNFKIIILDEADSMTTEAQSALRRIIEDTSSTTRFCIICNYITKIIEPL 194

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
             R  +  R     +E   T ++   K   +    EA  ++   S G  R +  LL+   
Sbjct: 195 GSRC-VKFRFKPIPLEAQITKLEEICKTEDIEYEKEALEKLIKISNGDLRKSVNLLQSAS 253

Query: 231 DFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
              E    K    E        L I+K+        Y  +I ++F     G++       
Sbjct: 254 TLYE-KDIKVEVIEEISGVNYLLCINKL--------YKLLIGKDFDKLKEGVKQFLYQGY 304

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGID 330
            P   +    E Y+I         + R+L  IA    G++
Sbjct: 305 SPDQLLYQFSE-YIISSKDFNEVKKARILEKIALADKGLN 343


>gi|110834636|ref|YP_693495.1| DNA polymerase III subunits gamma and tau [Alcanivorax borkumensis
           SK2]
 gi|110647747|emb|CAL17223.1| DNA polymerase III, gamma and tau subunits [Alcanivorax borkumensis
           SK2]
          Length = 615

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 57/291 (19%), Positives = 91/291 (31%), Gaps = 65/291 (22%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARE 77
               RPRT +E  GQ      L   ++      + L H  LF G  G+GKTT+A++++R 
Sbjct: 7   ARKYRPRTFDELVGQEHVSRALMHALD-----QDRLHHAYLFTGTRGVGKTTIARILSRC 61

Query: 78  LGVN------------------------FRSTSGPVIAKAGDLAALLTNLE------DRD 107
           L                                     K  D   LL N++         
Sbjct: 62  LNCEQGVSARPCGVCPTCQEITDGRFVDLIEVDAASRTKVEDTRELLDNVQYAPTRGRYK 121

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           V  IDE+H LS      L   +E+                         + ATT    L 
Sbjct: 122 VYLIDEVHMLSAHSFNALLKTLEE------------------PPPHVKFLLATTDPQKLP 163

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             +  R  +   L     E +   ++       +   + A   +   + G+ R A  L  
Sbjct: 164 VTVLSRC-LQFSLKALPAEQIAGHLKTLLDKEMIRYDEPALLSLGKAAEGSMRDALSL-- 220

Query: 228 RVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
              D A     + ++ E  +A L  +  + +      L  L  +A    GG
Sbjct: 221 --TDQAIAFGGEQLSSEAVNAMLGTVDRNHV------LTLLVALAEQEPGG 263


>gi|327483765|gb|AEA78172.1| DNA polymerase III subunits gamma and tau [Vibrio cholerae
           LMA3894-4]
          Length = 692

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 52/265 (19%), Positives = 82/265 (30%), Gaps = 57/265 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP    E  GQ    + L    E A A+       LF G  G+GKTT+ ++ A+ L    
Sbjct: 11  RPTRFSEVVGQSHVLTAL----ENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCET 66

Query: 83  ------------------------RSTSGPVIAKAGDLAALLTNLEDRD------VLFID 112
                                            K  D   LL N++ +       V  ID
Sbjct: 67  GITATPCGQCATCQEIDQGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRFKVYLID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS      L   +E+                         + ATT    L   +  
Sbjct: 127 EVHMLSRHSFNALLKTLEE------------------PPEYVKFLLATTDPQKLPVTILS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R  +   L    +E+++  + +      ++   +A   +A  + G+ R A  L     D 
Sbjct: 169 RC-LQFHLKPISVENIQQQLDKVLHAEQISSDSKALNLLAHAADGSMRDALSL----TDQ 223

Query: 233 AEVAHAKTITREIADAALLRLAIDK 257
           A       +  +I    L  L  D 
Sbjct: 224 AIALGNGVVKSDIVAHMLGTLDTDH 248


>gi|307191665|gb|EFN75139.1| Replication factor C subunit 5 [Harpegnathos saltator]
          Length = 329

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 63/189 (33%), Gaps = 30/189 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+ L+E          +  FI+        L H+L  GPPG GKT+     AR
Sbjct: 12  PWVEKYRPKNLDELISHETIIKTINKFID-----ENQLPHLLLYGPPGTGKTSTILACAR 66

Query: 77  E-------LGVNFRSTSGPVIAKAGDLA-ALLTNLEDRD-------VLFIDEIHRLSIIV 121
           +         +     +       G +   +L+             ++ +DE   ++I  
Sbjct: 67  KLYTPAQFNSMVVLELNASDDRGIGIVRGQILSFASTGTMYKSAFKLIILDEADAMTIDA 126

Query: 122 EEILYPAMEDFQ--LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +  L   +E +   +   +     ++ +    SR T             PL     IP  
Sbjct: 127 QNALRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTRFRFL--------PLAAEQIIPRL 178

Query: 180 LNFYEIEDL 188
            +  E E+L
Sbjct: 179 NHVIEAENL 187


>gi|301104184|ref|XP_002901177.1| ribosome biogenesis ATPase RIX7 [Phytophthora infestans T30-4]
 gi|262101111|gb|EEY59163.1| ribosome biogenesis ATPase RIX7 [Phytophthora infestans T30-4]
          Length = 771

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 58/232 (25%), Positives = 82/232 (35%), Gaps = 24/232 (10%)

Query: 23  RPR-TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQV 73
           RP     +  G       ++  IE      E   H        VL  GPPG GK+ LA  
Sbjct: 145 RPSARYSDVGGIQSILQEVRELIEYPLTHPEVYAHLGVEPPRGVLLHGPPGTGKSMLAHA 204

Query: 74  VARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEIL 125
           +A E G  F   S P +           L  L      R   ++FIDEI  ++   E   
Sbjct: 205 IAGECGATFLKISAPEVVSGMSGESEQKLRELFDEAISRAPSIIFIDEIDAITPKRETSA 264

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183
              ME   +  ++    S            LI AT R   L + L+   RF   I L   
Sbjct: 265 -RGMEKRIVAQLLTSTDSLSLENTGGKPVILIGATNRPDALDSALRRAGRFDREICLGIP 323

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
           + E  + I+    ++    +T E   + A  +R TP   G  L  +   A V
Sbjct: 324 DEEAREKIL----RVLARKMTLEGEFDFAALARRTPGYVGADLVSLTKEAAV 371



 Score = 43.9 bits (102), Expect = 0.032,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 8/73 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL  GPPG GKT LA+ +A E G NF S  GP +     G+    +  +  R       V
Sbjct: 487 VLLYGPPGCGKTLLAKAIAHESGANFISIKGPELLDKYVGESERSVRQVFQRARASSPCV 546

Query: 109 LFIDEIHRLSIIV 121
           +F DE+  L+   
Sbjct: 547 VFFDELDALAPRR 559


>gi|225718872|gb|ACO15282.1| Replication factor C subunit 5 [Caligus clemensi]
          Length = 345

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 36/237 (15%), Positives = 77/237 (32%), Gaps = 19/237 (8%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+ L +     +    ++ F++ ++     + H+LF GPPG GKT+     +R
Sbjct: 16  PWVEKYRPKDLSDLVSHEDIVGTIRRFVKESR-----MPHMLFYGPPGTGKTSAILAASR 70

Query: 77  ELGVNFRSTSGPVIAKAGD------LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           E+     ++S   +  + D         +L     + +          +I+ +       
Sbjct: 71  EVFGETSNSSVLELNASDDRGIDVARGRILNFASTKRIAIQAGTASFKLIILDEADAMTN 130

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           D        +    R ++              +  +   LQ R     R      E +  
Sbjct: 131 D-------AQNALRRIIEKFTDNVRFCLICNYLSKIIPALQSRC-TRFRFAPLASEQILP 182

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            +Q   K   L ++ + A  +   ++G  R    +L+       V +   I      
Sbjct: 183 RLQAVVKEESLEMSPDGAKALLTLAKGDMRRILNILQSCSMAFPVINESNIYACTGH 239


>gi|45659289|ref|YP_003375.1| DNA polymerase III subunit gamma [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|294828515|ref|NP_714511.2| DNA polymerase III subunit gamma [Leptospira interrogans serovar
           Lai str. 56601]
 gi|45602535|gb|AAS72012.1| DNA polymerase III gamma subunit [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|293386368|gb|AAN51529.2| DNA polymerase III gamma subunit [Leptospira interrogans serovar
           Lai str. 56601]
          Length = 479

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 84/235 (35%), Gaps = 21/235 (8%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +      RP+   +   Q  A   L+  +++ K         +F GP G+GKTT+A+++A
Sbjct: 6   EVLSRKYRPQKFRDVIHQDLAIGALQNALKSGKIGHAY----IFFGPRGVGKTTIARILA 61

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAME 130
           + L       + P   +    + +   +   DVL ID      I  +  + + + +  M 
Sbjct: 62  KRLNCQNPIDNEP-CNECNSCSEITRGISS-DVLEIDAASNRGIENIRELRDNVKFAPMG 119

Query: 131 DFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
                 ++ E             ++++   +    + ATT    +   +  R    I   
Sbjct: 120 GKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFVLATTEFHKIPETILSRCQDFIFKK 179

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
              +  L+   ++  K+  +    E    +A +  G+ R     + +   F +  
Sbjct: 180 V-PLSVLQDYSEKLCKIENVQYDQEGLFWVAKKGDGSVRDMLSFMEQAIVFTDSK 233


>gi|322698624|gb|EFY90393.1| activator 1 subunit 3 [Metarhizium acridum CQMa 102]
          Length = 921

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 64/172 (37%), Gaps = 30/172 (17%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
                   I   RP TL++ +G  +  + +  F+++ +     L H+L  GPPG GKT+ 
Sbjct: 38  EAEDSLPWIEKYRPATLDDVSGHQDILATINKFVDSNR-----LPHLLLYGPPGTGKTST 92

Query: 71  AQVVAR-------------------ELGVNFRSTSGPVIAKAGDL----AALLTNLEDRD 107
              +AR                   + G++         A    +    A+  +++    
Sbjct: 93  ILALARRIYGAANMRQMVLELNASDDRGIDVVREQIKTFASTKQIFTMGASAKSSIAGFK 152

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLD--LMVGEGPSARSVKINLSRFTLI 157
           ++ +DE   ++   +  L   ME + ++    +    S +     LSR T  
Sbjct: 153 LIILDEADAMTNTAQMALRRIMEKYTVNTRFCIIANYSHKLSPALLSRCTRF 204


>gi|226303865|ref|YP_002763823.1| DNA polymerase III gamma/tau subunit [Rhodococcus erythropolis PR4]
 gi|226182980|dbj|BAH31084.1| DNA polymerase III gamma/tau subunit [Rhodococcus erythropolis PR4]
          Length = 748

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 44/237 (18%), Positives = 79/237 (33%), Gaps = 23/237 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP +  E  GQ    + L   ++  +         LF GP G GKT+ A+++AR
Sbjct: 2   ALYRKYRPASFAEVVGQEHVTAPLSTALDTGRINHAY----LFSGPRGCGKTSSARILAR 57

Query: 77  ELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PA 128
            L      TS P  V      L        + DV  +D      +     L       PA
Sbjct: 58  SLNCEQGPTSTPCDVCDSCVSLGP--GGTGNLDVTELDAASHGGVDDTRELRDKAFHAPA 115

Query: 129 MEDFQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
              +++ ++         G     + V+        I ATT    +   ++ R       
Sbjct: 116 ASRYRVFIIDEAHMVTAAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSR-THHYPF 174

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                  ++ ++++     G+ V       +     G+PR +  +L ++   A    
Sbjct: 175 RLLAPSTMRGLLEKICAQEGVPVEPAVYPLVIKAGGGSPRDSLSVLDQLLAGAGEEG 231


>gi|156083703|ref|XP_001609335.1| cell division cycle protein ATPase [Babesia bovis T2Bo]
 gi|154796586|gb|EDO05767.1| cell division cycle protein ATPase, putative [Babesia bovis]
          Length = 922

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 51/215 (23%), Positives = 80/215 (37%), Gaps = 32/215 (14%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARELG 79
           +E  G  +  S ++  IE      E            V+  GPPG GKT +A+ +A E G
Sbjct: 361 DEIGGMDKQLSKIRELIELPLLHPEVYKAVGISPPKGVILHGPPGTGKTLIARAIASETG 420

Query: 80  VNFRSTSGPVI--AKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVE---EILYPA 128
            +    +GP I     G+  A L    ++       ++FIDEI  ++   E     L   
Sbjct: 421 AHCVVINGPEIMSKHVGESEAKLRRAFEKASKNSPAIIFIDEIDSIATKREKSPSELERR 480

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ-----DRFGIPIRLNFY 183
           +    L LM G  PS            ++AAT R+  +   L+     DR       +  
Sbjct: 481 IVSQLLTLMDGIEPS--------KNVVVLAATNRINSIDTALRRFGRFDREIEIAACDEE 532

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGT 218
           E  ++  I  RG +L+      + A E        
Sbjct: 533 ERYEILKIKTRGMRLSPDISLKKIAGECHGYVGAD 567



 Score = 52.4 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 81/228 (35%), Gaps = 19/228 (8%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVAR 76
            T E+  G  +    L   ++      E            VLF GPPG GKT LA+ +A 
Sbjct: 633 TTWEDIGGLEDVKKELIETVQYPVEHPEKFRKFGQASSKGVLFYGPPGCGKTLLAKAIAH 692

Query: 77  ELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPA 128
           E   NF S  GP +     G+  A +  L D+       +LF DEI  ++         +
Sbjct: 693 ECNANFISIKGPELLTMWFGESEANVRELFDKARAAAPCILFFDEIDSIAKTRGGPGGGS 752

Query: 129 MEDFQ-LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
               +  D ++ +  +            +IAAT R  +L   +    R    I ++  ++
Sbjct: 753 SSGSEAADRVINQILTEIDGVNVKKPIFIIAATNRPDILDPAICRPGRLDQLIYISLPDL 812

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
           +  ++I +   K + LA               +      +  R    A
Sbjct: 813 KSRESIFKAALKNSPLAPDVNIRRMAEELEGYSGADIAEICHRAAREA 860


>gi|325478877|gb|EGC81987.1| ATP-dependent metallopeptidase HflB [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 651

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 60/247 (24%), Positives = 103/247 (41%), Gaps = 27/247 (10%)

Query: 25  RTLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +T ++  GQ EA  +L   +       +  +  A+    VL VGPPG GKT +AQ VA E
Sbjct: 170 KTFKDVAGQEEAKDSLSEIVDFLHNPGKYKEIGAKVPKGVLLVGPPGTGKTLMAQAVAGE 229

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
             V F S SG           A  +  L    +++   ++FIDEI  +    +   Y   
Sbjct: 230 ANVPFFSISGSEFVEMFVGMGASKVRDLFKQAKEKAPCIVFIDEIDAIGKKRDVSGYSGN 289

Query: 130 EDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           ++ +  L  ++ E     + +       L+AAT R  +L   L    RF   +++   ++
Sbjct: 290 DEREQTLNQLLNEMDGFDATEG----VVLLAATNRPEILDPALTRPGRFDRQVQVELPDL 345

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           +  + I++  AK       D    EIA R+ GT   +G  L  + +   +   +   R++
Sbjct: 346 KGREDILKVHAKNIKRE-DDIDYEEIAKRTAGT---SGADLANIINEGALRAVREGRRKL 401

Query: 246 ADAALLR 252
               L  
Sbjct: 402 TQEDLEE 408


>gi|262402603|ref|ZP_06079164.1| DNA polymerase III subunits gamma and tau [Vibrio sp. RC586]
 gi|262351385|gb|EEZ00518.1| DNA polymerase III subunits gamma and tau [Vibrio sp. RC586]
          Length = 695

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 53/251 (21%), Positives = 90/251 (35%), Gaps = 29/251 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP    E  GQ    + L    E A A+       LF G  G+GKTT+ ++ A+ L    
Sbjct: 11  RPTRFNEVVGQSHVLTAL----ENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCET 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILY------PAMEDFQL 134
             T+ P     G+ A      + R  D+L ID   R  +     L       PA   F++
Sbjct: 67  GITATP----CGECATCKEIDQGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRFKV 122

Query: 135 DLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            L+               ++++        + ATT    L   +  R  +   L    ++
Sbjct: 123 YLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRC-LQFHLKPISVD 181

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +++  + +      +A  ++A   +A  + G+ R A  L     D A       +  +I 
Sbjct: 182 NIQQQLDKVLHAEKIACDNKALNLLAHAADGSMRDALSL----TDQAIALGNGAVKSDIV 237

Query: 247 DAALLRLAIDK 257
              L  L  D 
Sbjct: 238 AHMLGTLDTDH 248


>gi|305680163|ref|ZP_07402973.1| DNA polymerase III, subunit gamma and tau [Corynebacterium
           matruchotii ATCC 14266]
 gi|305660783|gb|EFM50280.1| DNA polymerase III, subunit gamma and tau [Corynebacterium
           matruchotii ATCC 14266]
          Length = 977

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 81/228 (35%), Gaps = 21/228 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP +  E  GQ +    L   ++  +         LF GP G GKT+ A+++AR
Sbjct: 2   ALYRKYRPGSFNELVGQEQVTVPLSAALDNGRINHAY----LFSGPRGCGKTSSARIMAR 57

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTN-LEDRDVLFIDEIHRLSIIVEEILY------PAM 129
            L      TS P   K     +L  N   + DV  +D      +     L       PA 
Sbjct: 58  SLNCVNGPTSKP-CGKCNSCVSLAANGPGNLDVTELDAASHNGVDDMRELRDRAMFAPAE 116

Query: 130 EDFQLDLMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
             +++ ++         G     + V+   +    I ATT    +   ++ R        
Sbjct: 117 SRYRIFIIDEAHMITNQGSNALLKIVEEPPAHLIFIFATTEPEKVIGTIRSR-THHYPFR 175

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
               + ++ +++R     G  + +     +     G+PR    +L ++
Sbjct: 176 LLTPQAMRGLLERTVAAEGAIIEESVYPLVIRAGGGSPRDTLSILDQL 223


>gi|87307573|ref|ZP_01089717.1| DNA polymerase III gamma and tau subunits [Blastopirellula marina
           DSM 3645]
 gi|87289743|gb|EAQ81633.1| DNA polymerase III gamma and tau subunits [Blastopirellula marina
           DSM 3645]
          Length = 618

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 79/246 (32%), Gaps = 57/246 (23%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP++ EE  GQ +    LK  IE    R       LF G  G+GKT+ A+++A+ L
Sbjct: 22  ARRYRPQSFEELVGQSQVAQALKNAIE----RGRVGHAYLFTGARGVGKTSSARILAKAL 77

Query: 79  GVNF------------------------RSTSGPVIAKAGDLAALLTNLEDRD------V 108
                                           G       ++  L +N+  R       +
Sbjct: 78  NCQRGPSATPCNECDICRSVTVGEDVDVLEIDGASNRGIEEIRQLRSNVNIRPSRARFKI 137

Query: 109 LFIDEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
             IDE+H  +      L   +E+    +  +       +     LSR             
Sbjct: 138 YIIDEVHMFTKEAFNALLKTLEEPPEHVKFIFCTTDPEKIPITVLSRCQ----------- 186

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
                 RF          +  L  IV+      G+    EA   +A ++ G+ R +  LL
Sbjct: 187 ------RFDFGGIRMDEIVTRLAYIVEN----EGVTAEPEALRLLARKANGSMRDSQSLL 236

Query: 227 RRVRDF 232
            ++  F
Sbjct: 237 EQLLAF 242


>gi|85110311|ref|XP_963397.1| activator 1 subunit 3 [Neurospora crassa OR74A]
 gi|28881264|emb|CAD70523.1| related to replication factor C chain Rfc3 [Neurospora crassa]
 gi|28925076|gb|EAA34161.1| activator 1 subunit 3 [Neurospora crassa OR74A]
          Length = 389

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 75/225 (33%), Gaps = 12/225 (5%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
                   +   RP +L + +GQ +  + +  F++  +     L H+LF GPPG GKT+ 
Sbjct: 38  EAEDSLPWVEKYRPVSLSDVSGQQDILATINKFVDTNR-----LPHLLFYGPPGTGKTST 92

Query: 71  AQVVARE------LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
              +AR+      +       +         +   +        +F          +   
Sbjct: 93  VLALARQIYGAANMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSLGSSSSRSGLAGF 152

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
               +++        +    R ++   +             L+  L  R     R +  +
Sbjct: 153 KLIILDEADAMTSTAQMALRRIMEKYTANTRFCIIANYSHKLSPALLSRC-TRFRFSPLK 211

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
            +D++ +V +      + +  +A   +   S+G  R A  +L+  
Sbjct: 212 EKDIRVLVDKVIDEENVKILPDATDALVRLSKGDMRRALNVLQAC 256


>gi|298528795|ref|ZP_07016199.1| DNA polymerase III, subunits gamma and tau [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298512447|gb|EFI36349.1| DNA polymerase III, subunits gamma and tau [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 561

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 81/227 (35%), Gaps = 27/227 (11%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVAREL 78
           +  RP+   +  GQ    S L        A  +   H  LF G  G+GKTTLA+++++ +
Sbjct: 8   ARYRPQNFAQVAGQDFIKSILSRA-----AGQDRPSHAYLFSGTRGVGKTTLARILSKAI 62

Query: 79  GVNFRSTSGPVIAKAGDLA--ALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
                  +GP        +    +T     DV  ID      +  +  + E++ Y  M  
Sbjct: 63  NC----YNGPAPEPCNQCSSCEQITRGASPDVWEIDAASHTGVDNVRKLREDVAYSPMSG 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
               +++ E             ++++   +    I ATT        +  R    +    
Sbjct: 119 RYKVVIIDEAHMLSTSAFNALLKTLEEPPAHCVFIMATTAPEKFPATVISRCQHYVFKRL 178

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
              E L   +       G++   EA   +  R  G+ R +  +L +V
Sbjct: 179 THGE-LFAHLCFVLDTEGVSYEKEAVHLLTRRGSGSVRDSMSMLGQV 224


>gi|195491632|ref|XP_002093645.1| GE20646 [Drosophila yakuba]
 gi|194179746|gb|EDW93357.1| GE20646 [Drosophila yakuba]
          Length = 331

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 54/283 (19%), Positives = 96/283 (33%), Gaps = 41/283 (14%)

Query: 2   MDREGLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M  E +++ +  +     I   RP   +E  G  +  + L VF     A      +++  
Sbjct: 1   MPEEPMITADDKRSHLPWIEKYRPAKFKEIVGNEDTVARLSVFATQGNA-----PNIIIA 55

Query: 61  GPPGLGKTTLAQVVAR------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDR 106
           GPPG+GKTT  Q +AR            EL  +       V  K    A     L     
Sbjct: 56  GPPGVGKTTTIQCLARILLGDSYKEAVLELNASNERGIDVVRNKIKMFAQQKVTLPRGRH 115

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
            ++ +DE   ++   ++ L   ME +                   +RF L   T+    +
Sbjct: 116 KIVILDEADSMTEGAQQALRRTMEIYSST----------------TRFALACNTSE--KI 157

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA-GRL 225
             P+Q R  +       + + L  +++  AK   L  T++    I   ++G  R     L
Sbjct: 158 IEPIQSRCAMLRFTKLSDAQVLAKLIE-VAKWEKLNYTEDGLEAIVFTAQGDMRQGLNNL 216

Query: 226 LRRVRDFAEVAHAKTI-TREIADAALLRLAIDKMGFDQLDLRY 267
               + F ++         +     LL   I     + +   Y
Sbjct: 217 QSTAQGFGDITAENVFKVCDEPHPKLLEEMIHHCAANDIHKAY 259


>gi|68067050|ref|XP_675496.1| replication factor C3 [Plasmodium berghei strain ANKA]
 gi|56494714|emb|CAH95400.1| replication factor C3, putative [Plasmodium berghei]
          Length = 329

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 75/213 (35%), Gaps = 11/213 (5%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +   RP  L +     +  S ++ F+E  +     L H+L  GPPG GKT+    V +EL
Sbjct: 1   VEKYRPSVLNDIISHEQVISTIRKFVEKGE-----LPHLLLHGPPGTGKTSTILAVCKEL 55

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138
               RS+    +  + D    +   + +   F +  +  + I E      +   + D M 
Sbjct: 56  YGESRSSFVLELNASDDRGITVVREQIKT--FAESKNHYN-ICERTSLKLIILDEADHMT 112

Query: 139 --GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA 196
              +    R ++              V  +T  +Q R     R +  + E +       A
Sbjct: 113 FPAQNAMRRIMENYAKNVRFCLICNYVNKITPAIQSRC-TSFRFSPLKEEYMLNKALDIA 171

Query: 197 KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           K   + +T      +    RG  R     L+ V
Sbjct: 172 KSENVNLTKNGVESLIRVGRGDMRRILNCLQVV 204


>gi|254248057|ref|ZP_04941378.1| DNA polymerase III, subunits gamma and tau [Burkholderia
           cenocepacia PC184]
 gi|124872833|gb|EAY64549.1| DNA polymerase III, subunits gamma and tau [Burkholderia
           cenocepacia PC184]
          Length = 346

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 84/229 (36%), Gaps = 27/229 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+      GQ      L   ++  +     L H  LF G  G+GKTTL+++ A+ L   
Sbjct: 11  RPKDFASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAMEDFQL 134
              TS P     G   A     E R V +++        +  ++ ++E  +Y  ++    
Sbjct: 66  TGVTSQP----CGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             M+ E             ++++        I ATT    +   +  R  +   L     
Sbjct: 122 VYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPA 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
             + + ++R      +    +A   +A  ++G+ R A  L  +   ++ 
Sbjct: 181 GHIVSHLERILGEEQITFEPQALRLLARAAQGSMRDALSLTDQAIAYSA 229


>gi|125982841|ref|XP_001355186.1| GA20846 [Drosophila pseudoobscura pseudoobscura]
 gi|54643499|gb|EAL32243.1| GA20846 [Drosophila pseudoobscura pseudoobscura]
          Length = 354

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 76/229 (33%), Gaps = 30/229 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP ++++   Q E  + L+  +E A      L ++L  GPPG GKT+     AR
Sbjct: 32  PWVEKYRPSSVDDVVEQSEVVAVLRKCVEGAD-----LPNMLLYGPPGTGKTSTILAAAR 86

Query: 77  ------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD--------VLFIDEIHR 116
                       EL  +       V  K  + + L  +    D        ++ +DE   
Sbjct: 87  QIFGDMYKDRILELNASDERGINVVRTKIKNFSQLSASHVRPDGRPVPPFKIIILDEADS 146

Query: 117 LSIIVEEILYPAM--EDFQLDLMVGEGPSARSVKINLSRFTLIAATTR-VGLLTNPLQDR 173
           ++   +  L   M  E       +     +R +    SR +           +   LQ  
Sbjct: 147 MTHAAQSALRRTMEKESSSTRFCLICNYVSRIIVPITSRCSKFRFKPLGEEKIIARLQHI 206

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
             +       + +  KTIV+        A+T   +C     S  T   A
Sbjct: 207 CELESVK--IDPDAYKTIVKISGGDLRRAITTLQSCFRLQGSEHTINTA 253


>gi|313217116|emb|CBY38291.1| unnamed protein product [Oikopleura dioica]
 gi|313225063|emb|CBY20856.1| unnamed protein product [Oikopleura dioica]
          Length = 326

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 41/254 (16%), Positives = 80/254 (31%), Gaps = 38/254 (14%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           + RN       +   RP  + +  G  E    L VF     A+   L +++  GPPG GK
Sbjct: 1   MDRNKGYNLPWVEKYRPTFMSDIAGNQETVERLAVF-----AKEGNLPNIIIAGPPGCGK 55

Query: 68  TTLAQVVAREL-----GVNFRSTSGPVIAKAGDLAALLTN---------LEDRDVLFIDE 113
           TT    +AR +            +         +   +                ++ +DE
Sbjct: 56  TTSILCLARTMLGEHFNEAVLELNASNDRGIDVVRNKIKMFAQKKCTLPAGKHKIIILDE 115

Query: 114 IHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
              ++   ++ L   ME +                   +RF    A      +  P+Q R
Sbjct: 116 ADSMTSGAQQALRRTMEIYSKT----------------TRF--ALACNNSEKIIEPIQSR 157

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
             +       +++ L  I +   K   +    +    I   ++G  R A   L+      
Sbjct: 158 CAVLRFSKLSDVQVLARITE-VIKHENVDYDQKGLEAILFTAQGDMRQALNNLQATHSGL 216

Query: 234 EVAHAKTITREIAD 247
            V ++  + +   +
Sbjct: 217 GVVNSDNVFKVCDE 230


>gi|78484874|ref|YP_390799.1| DNA-directed DNA polymerase [Thiomicrospira crunogena XCL-2]
 gi|78363160|gb|ABB41125.1| DNA polymerase III, tau subunit [Thiomicrospira crunogena XCL-2]
          Length = 696

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 54/282 (19%), Positives = 88/282 (31%), Gaps = 65/282 (23%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+   E  GQ      L   ++      + L H  LF G  G+GKTT+A++ ++ L   
Sbjct: 11  RPKNFSELVGQTHVMQALSNALD-----QQRLHHAYLFTGTRGVGKTTIARIFSKALNCE 65

Query: 82  FRSTS------------------------GPVIAKAGDLAALLTNLE------DRDVLFI 111
              TS                             K  D   LL N++         V  I
Sbjct: 66  QGITSKPCGVCSTCRSIDEGRFVDLIEVDAASKTKVEDTRELLENVQYAPVQGRYKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSKSSFNALLKTLEE------------------PPEHVKFLLATTDPHKLPITVL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L    +  ++  +    +   +   + A   IA  + G+ R +  +L    D
Sbjct: 168 SRC-LQFNLMRLTLPQIQQHLAYILQQEQVTFEETALAMIAKSADGSARDSLSIL----D 222

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIAR 273
            A       +  +   A L  +        Q  L  L+ +A 
Sbjct: 223 QAIAYGGGKVQYDAVQAMLGLVD------QQFTLNILSALAN 258


>gi|124025741|ref|YP_001014857.1| cell division protein FtsH4 [Prochlorococcus marinus str. NATL1A]
 gi|123960809|gb|ABM75592.1| cell division protein FtsH4 [Prochlorococcus marinus str. NATL1A]
          Length = 575

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 56/266 (21%), Positives = 99/266 (37%), Gaps = 28/266 (10%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLK---VFIEAAKARAE----ALDHVLFVG 61
           S  V+++D     +R  T ++  G  +    LK   +F++  +   +        VL VG
Sbjct: 110 SSQVNEDD-----IRKYTFDDVAGLNQESDELKEIVIFLKNPQTLKDLGAKTPKGVLLVG 164

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDE 113
           PPG GKT LA+ +A E  V F S S            AG +  L  + + +   ++FIDE
Sbjct: 165 PPGTGKTLLARSIAGEADVPFFSISASEFVEMFVGVGAGRVRDLFKSAKSKAPCIVFIDE 224

Query: 114 IHRLSIIVEEILYPAMEDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           I  +       +    ++ +  L  ++ E     +         +IAAT R  +L   L 
Sbjct: 225 IDSIGRQRGAGIGGGNDEREQTLNQLLTEMDGFEANNG----VIVIAATNRPDILDRALT 280

Query: 172 D--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
              RF   I ++  + E    I+   A+   L  +             +      L+   
Sbjct: 281 RPGRFDRRIDISLPDREARHKILSVHARTKPLCDSVNLKDWATKTPGYSGADLQNLMNEA 340

Query: 230 RDFAEVAHAKTITREIADAALLRLAI 255
             +A   +   I+    + AL +   
Sbjct: 341 AIYAARNNKSVISSIELENALEKTRF 366


>gi|15641067|ref|NP_230699.1| DNA polymerase III subunits gamma and tau [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|153819387|ref|ZP_01972054.1| DNA polymerase III, subunits gamma and tau [Vibrio cholerae NCTC
           8457]
 gi|227081227|ref|YP_002809778.1| DNA polymerase III, gamma/tau subunits [Vibrio cholerae M66-2]
 gi|229505351|ref|ZP_04394861.1| DNA polymerase III subunits gamma and tau [Vibrio cholerae BX
           330286]
 gi|229510979|ref|ZP_04400458.1| DNA polymerase III subunits gamma and tau [Vibrio cholerae B33]
 gi|229518100|ref|ZP_04407544.1| DNA polymerase III subunits gamma and tau [Vibrio cholerae RC9]
 gi|229608370|ref|YP_002879018.1| DNA polymerase III subunits gamma and tau [Vibrio cholerae MJ-1236]
 gi|254848183|ref|ZP_05237533.1| DNA polymerase III subunits gamma and tau [Vibrio cholerae MO10]
 gi|255745471|ref|ZP_05419419.1| DNA polymerase III subunits gamma and tau [Vibrio cholera CIRS 101]
 gi|298498838|ref|ZP_07008645.1| DNA polymerase III [Vibrio cholerae MAK 757]
 gi|9655520|gb|AAF94213.1| DNA polymerase III, subunits gamma and tau [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|126510068|gb|EAZ72662.1| DNA polymerase III, subunits gamma and tau [Vibrio cholerae NCTC
           8457]
 gi|227009115|gb|ACP05327.1| DNA polymerase III, gamma/tau subunits [Vibrio cholerae M66-2]
 gi|229344815|gb|EEO09789.1| DNA polymerase III subunits gamma and tau [Vibrio cholerae RC9]
 gi|229350944|gb|EEO15885.1| DNA polymerase III subunits gamma and tau [Vibrio cholerae B33]
 gi|229357574|gb|EEO22491.1| DNA polymerase III subunits gamma and tau [Vibrio cholerae BX
           330286]
 gi|229371025|gb|ACQ61448.1| DNA polymerase III subunits gamma and tau [Vibrio cholerae MJ-1236]
 gi|254843888|gb|EET22302.1| DNA polymerase III subunits gamma and tau [Vibrio cholerae MO10]
 gi|255736546|gb|EET91943.1| DNA polymerase III subunits gamma and tau [Vibrio cholera CIRS 101]
 gi|297543171|gb|EFH79221.1| DNA polymerase III [Vibrio cholerae MAK 757]
          Length = 692

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 52/265 (19%), Positives = 82/265 (30%), Gaps = 57/265 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP    E  GQ    + L    E A A+       LF G  G+GKTT+ ++ A+ L    
Sbjct: 11  RPTRFSEVVGQSHVLTAL----ENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCET 66

Query: 83  ------------------------RSTSGPVIAKAGDLAALLTNLEDRD------VLFID 112
                                            K  D   LL N++ +       V  ID
Sbjct: 67  GITATPCGQCATCQEIDQGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRFKVYLID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS      L   +E+                         + ATT    L   +  
Sbjct: 127 EVHMLSRHSFNALLKTLEE------------------PPEYVKFLLATTDPQKLPVTILS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R  +   L    +E+++  + +      ++   +A   +A  + G+ R A  L     D 
Sbjct: 169 RC-LQFHLKPISVENIQQQLDKVLHAEQISSDSKALNLLAHAADGSMRDALSL----TDQ 223

Query: 233 AEVAHAKTITREIADAALLRLAIDK 257
           A       +  +I    L  L  D 
Sbjct: 224 AIALGNGVVKSDIVAHMLGTLDTDH 248


>gi|331701734|ref|YP_004398693.1| DNA polymerase III subunits gamma and tau [Lactobacillus buchneri
           NRRL B-30929]
 gi|329129077|gb|AEB73630.1| DNA polymerase III, subunits gamma and tau [Lactobacillus buchneri
           NRRL B-30929]
          Length = 600

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 45/237 (18%), Positives = 81/237 (34%), Gaps = 25/237 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  +E  GQ      LK     A    +     LF GP G GKT+ A++ A+ +  ++
Sbjct: 11  RPQRFDEIVGQSIITRTLK----NALITKQTSHAYLFTGPRGTGKTSAAKIFAKAVNCHY 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P      +    +      DV+ ID      +  +  I ++  Y   +      +
Sbjct: 67  LKDGEPCNQC--ETCKAINEGSLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQADYKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++   +    I ATT    +   +  R          + +D+
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPATIISRTQ-KFDFKRIKPQDI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
              ++       +   D+A   IA  + G  R A  +L    D A       IT E 
Sbjct: 184 LERMKYILDQKKVEYDDKALKLIAKAAEGGMRDALSIL----DQAMSYGDNKITYEN 236


>gi|107028994|ref|YP_626089.1| DNA polymerase III subunits gamma and tau [Burkholderia cenocepacia
           AU 1054]
 gi|116689848|ref|YP_835471.1| DNA polymerase III subunits gamma and tau [Burkholderia cenocepacia
           HI2424]
 gi|105898158|gb|ABF81116.1| DNA polymerase III, subunits gamma and tau [Burkholderia
           cenocepacia AU 1054]
 gi|116647937|gb|ABK08578.1| DNA polymerase III, subunits gamma and tau [Burkholderia
           cenocepacia HI2424]
          Length = 787

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 84/229 (36%), Gaps = 27/229 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+      GQ      L   ++      E L H  LF G  G+GKTTL+++ A+ L   
Sbjct: 11  RPKDFASLVGQEHVVRALTHALD-----GERLHHAYLFTGTRGVGKTTLSRIFAKALNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAMEDFQL 134
              TS P     G   A     E R V +++        +  ++ ++E  +Y  ++    
Sbjct: 66  TGVTSQP----CGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             M+ E             ++++        I ATT    +   +  R  +   L     
Sbjct: 122 VYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPA 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
             + + ++R      +    +A   +A  ++G+ R A  L  +   ++ 
Sbjct: 181 GHIVSHLERILGEEQITFEPQALRLLARAAQGSMRDALSLTDQAIAYSA 229


>gi|328874863|gb|EGG23228.1| replication factor C subunit [Dictyostelium fasciculatum]
          Length = 368

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 40/205 (19%), Positives = 67/205 (32%), Gaps = 30/205 (14%)

Query: 2   MDREGLLSRNVSQE----DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV 57
           MD E L  +   Q        +   RP++L+E     +    +   I+       +L H+
Sbjct: 3   MDEEYLRKQTKEQRIHDSLPWVEKYRPKSLKELISHEDIIDTITKLID-----KNSLPHL 57

Query: 58  LFVGPPGLGKTTLAQVVAR-----ELGVNFRSTSGPVIAKAGDLAALLT---------NL 103
           LF GPPG GKT+  Q VAR              +         +   +          N 
Sbjct: 58  LFYGPPGTGKTSTIQAVARKLYGDNYSRMVLELNASDDRGIDVVREQIKSFAGSMGIFNT 117

Query: 104 EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD--LMVGEGPSARSVKINLSRFTLIAATT 161
               ++ +DE   ++   +  L   +E +       +      + +    SR T      
Sbjct: 118 NQFKLIILDEADSMTNAAQTALRRVIETYTKTTRFCMICNYVGKLIPALQSRCTRF---- 173

Query: 162 RVGLLTNP-LQDRFGIPIRLNFYEI 185
           R G L  P    R    +    Y+I
Sbjct: 174 RFGRLGKPQSIKRIKEIVEQEKYDI 198


>gi|289192114|ref|YP_003458055.1| transcriptional regulator, XRE family [Methanocaldococcus sp.
           FS406-22]
 gi|288938564|gb|ADC69319.1| transcriptional regulator, XRE family [Methanocaldococcus sp.
           FS406-22]
          Length = 864

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 18/92 (19%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK--TTLAQ 72
           +   +   RP+TL++  GQ E    LK ++E      +++ H+LF GPPG+GK  T   +
Sbjct: 2   DKPWVEKYRPKTLDDIVGQDEIVKRLKKYVE-----KKSMPHLLFSGPPGVGKCLTGDTK 56

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLE 104
           V+               I + G++   ++N +
Sbjct: 57  VIIN-----------GEIREIGEVVEEISNGK 77



 Score = 45.1 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 45/238 (18%), Positives = 84/238 (35%), Gaps = 38/238 (15%)

Query: 62  PPGLGKTTLAQVVARE-----LGVNFRSTSGPVIAKAGDLAALLTNLED--------RDV 108
           P  L  TT A  +AR+        NF   +         +   + +             +
Sbjct: 592 PTVLHNTTAALCLARDLFGENWRDNFLELNASDERGIDVIRTKVKDFARTKPIGDVPFKI 651

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +F+DE   L+   +  L   ME +                 ++ RF  I +      +  
Sbjct: 652 IFLDESDALTADAQNALRRTMEKYS----------------DVCRF--ILSCNYPSRIIP 693

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
           P+Q R  +  R +  + ED+   ++  A+  GL +T+     I   S G  R A  +L+ 
Sbjct: 694 PIQSRCAV-FRFSPLKKEDIAKKLKEIAEKEGLNLTESGLEAIIYVSEGDMRKAINVLQT 752

Query: 229 VRDFAEVAHAK------TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV 280
               ++V   +      +  R      +++LA+D    +  DL Y  M+     G  +
Sbjct: 753 AAALSDVIDDEIVYKVSSRARPEEVKKMMQLALDGKFIEARDLLYKLMVEWGMSGEDI 810


>gi|269966017|ref|ZP_06180109.1| DNA polymerase III, subunits gamma and tau [Vibrio alginolyticus
           40B]
 gi|269829413|gb|EEZ83655.1| DNA polymerase III, subunits gamma and tau [Vibrio alginolyticus
           40B]
          Length = 495

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 86/249 (34%), Gaps = 25/249 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP   ++  GQ    + L    E A A+       LF G  G+GKT++ ++ A+  G+N 
Sbjct: 11  RPNQFDQVVGQKHVLTAL----ENALAQNRLHHAYLFSGTRGVGKTSIGRLFAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D+L ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGKCDTCREIDEGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++        + ATT    L   +  R  +   L    ++D+
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRC-LQFHLKPISVDDI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              +        ++   +A   I+  + G+ R A  L     D A       +  +I   
Sbjct: 184 HQQLDYILGQEQVSAEPKALGMISHAADGSMRDALSL----TDQAIALGNGAVQADIVSH 239

Query: 249 ALLRLAIDK 257
            L  +  D+
Sbjct: 240 MLGTIDTDQ 248


>gi|330833256|ref|YP_004402081.1| DNA polymerase III subunit gamma/tau [Streptococcus suis ST3]
 gi|329307479|gb|AEB81895.1| DNA polymerase III subunit gamma/tau [Streptococcus suis ST3]
          Length = 555

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 51/280 (18%), Positives = 92/280 (32%), Gaps = 27/280 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     R +T  E  GQ    + LK  IE  K         LF GP G GKT+ A++ A+
Sbjct: 4   ALYRKYRSQTFGEMVGQEVVATTLKQAIEQGKISHAY----LFSGPRGTGKTSAAKIFAK 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHR---------LSIIVEEILYP 127
            +    +    P       +   +T     DV+ ID                        
Sbjct: 60  AMNCPNQVGGEPCNDCY--ICQAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLA 117

Query: 128 AMEDFQLDLMVGEGPSA-----RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             + + +D +      A     ++++        I ATT +  +   +  R         
Sbjct: 118 TYKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQ-RFEFKS 176

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            ++ D++  +       GL   ++A   IA R+ G  R A  +L +    ++        
Sbjct: 177 IKVTDIQEHLAAILTKEGLIFDEQALTIIARRAEGGMRDALSILDQALSLSQDQQVTLEI 236

Query: 243 REIADAALLRLAID------KMGFDQLDLRYLTMIARNFG 276
            E    ++   A+D      + G     L++L  +     
Sbjct: 237 AEEITGSISLRALDDYVASLRQGDSVTALQHLQTLFDQGK 276


>gi|258626249|ref|ZP_05721096.1| DNA polymerase III, subunits gamma and tau [Vibrio mimicus VM603]
 gi|258581301|gb|EEW06203.1| DNA polymerase III, subunits gamma and tau [Vibrio mimicus VM603]
          Length = 688

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 52/265 (19%), Positives = 82/265 (30%), Gaps = 57/265 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP    E  GQ    + L    E A A+       LF G  G+GKTT+ ++ A+ L    
Sbjct: 11  RPTRFSEVVGQTHVLTAL----ENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCET 66

Query: 83  ------------------------RSTSGPVIAKAGDLAALLTNLEDRD------VLFID 112
                                            K  D   LL N++ +       V  ID
Sbjct: 67  GITATPCGQCATCKEIDQGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRFKVYLID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS      L   +E+                         + ATT    L   +  
Sbjct: 127 EVHMLSRHSFNALLKTLEE------------------PPEYVKFLLATTDPQKLPVTILS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R  +   L    +E+++  + +  +   +    +A   +A  + G+ R A  L     D 
Sbjct: 169 RC-LQFHLKPISVENIQQQLDKVLQAEQITSDSKALNLLAHAADGSMRDALSL----TDQ 223

Query: 233 AEVAHAKTITREIADAALLRLAIDK 257
           A       +  +I    L  L  D 
Sbjct: 224 AIALGNGVVKSDIVAHMLGTLDTDH 248


>gi|257081660|ref|ZP_05576021.1| DNA-directed DNA polymerase III [Enterococcus faecalis E1Sol]
 gi|256989690|gb|EEU76992.1| DNA-directed DNA polymerase III [Enterococcus faecalis E1Sol]
          Length = 586

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 50/294 (17%), Positives = 99/294 (33%), Gaps = 30/294 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           R +  ++  GQ      LK  I     + +     LF GP G GKT+ A++ A+ +    
Sbjct: 11  RSQRFDDVVGQKAITQTLKNAI----VQKKTSHAYLFTGPRGTGKTSAAKIFAKAINCKH 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P      +    +T     DV+ ID      +  +  I ++  Y   +      +
Sbjct: 67  SQDGEP--CNVCETCVAITEGRLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQAEYKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT    +   +  R            +D+
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRTQ-RFDFKRISTQDI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              +    +   L   ++A   I   + G  R A  +L +   F++            + 
Sbjct: 184 VDHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSILDQTISFSDEKV-------TLED 236

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           A+       + ++ +D      +A +      G+E+I     E R  +EDL+  
Sbjct: 237 AMQVTG--SLTYEMMDHYIQCCVAGDVERALEGLESILGEGKEARRFLEDLLLY 288


>gi|229492523|ref|ZP_04386326.1| DNA polymerase III subunit gamma/tau [Rhodococcus erythropolis
           SK121]
 gi|229320509|gb|EEN86327.1| DNA polymerase III subunit gamma/tau [Rhodococcus erythropolis
           SK121]
          Length = 738

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 44/237 (18%), Positives = 79/237 (33%), Gaps = 23/237 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP +  E  GQ    + L   ++  +         LF GP G GKT+ A+++AR
Sbjct: 2   ALYRKYRPASFAEVVGQEHVTAPLSTALDTGRINHAY----LFSGPRGCGKTSSARILAR 57

Query: 77  ELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PA 128
            L      TS P  V      L        + DV  +D      +     L       PA
Sbjct: 58  SLNCEQGPTSTPCNVCDSCVSLGP--GGTGNLDVTELDAASHGGVDDTRELRDKAFHAPA 115

Query: 129 MEDFQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
              +++ ++         G     + V+        I ATT    +   ++ R       
Sbjct: 116 ASRYRVFIIDEAHMVTAAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSR-THHYPF 174

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                  ++ ++++     G+ V       +     G+PR +  +L ++   A    
Sbjct: 175 RLLAPSTMRGLLEKICAQEGVPVEPAVYPLVIKAGGGSPRDSLSVLDQLLAGAGEEG 231


>gi|146319281|ref|YP_001198993.1| DNA polymerase III subunits gamma and tau [Streptococcus suis
           05ZYH33]
 gi|146321485|ref|YP_001201196.1| DNA polymerase III subunits gamma and tau [Streptococcus suis
           98HAH33]
 gi|253752319|ref|YP_003025460.1| DNA polymerase III subunit gamma/tau [Streptococcus suis SC84]
 gi|253754145|ref|YP_003027286.1| DNA polymerase III subunit gamma/tau [Streptococcus suis P1/7]
 gi|253756079|ref|YP_003029219.1| DNA polymerase III subunit gamma/tau [Streptococcus suis BM407]
 gi|145690087|gb|ABP90593.1| DNA polymerase III, gamma/tau subunits [Streptococcus suis 05ZYH33]
 gi|145692291|gb|ABP92796.1| DNA polymerase III, gamma/tau subunits [Streptococcus suis 98HAH33]
 gi|251816608|emb|CAZ52246.1| DNA polymerase III subunit gamma/tau [Streptococcus suis SC84]
 gi|251818543|emb|CAZ56374.1| DNA polymerase III subunit gamma/tau [Streptococcus suis BM407]
 gi|251820391|emb|CAR46990.1| DNA polymerase III subunit gamma/tau [Streptococcus suis P1/7]
 gi|292558914|gb|ADE31915.1| DNA-directed DNA polymerase [Streptococcus suis GZ1]
 gi|319758715|gb|ADV70657.1| DNA polymerase III subunits gamma and tau [Streptococcus suis JS14]
          Length = 555

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 51/280 (18%), Positives = 92/280 (32%), Gaps = 27/280 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     R +T  E  GQ    + LK  IE  K         LF GP G GKT+ A++ A+
Sbjct: 4   ALYRKYRSQTFGEMVGQEVVATTLKQAIEQGKISHAY----LFSGPRGTGKTSAAKIFAK 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHR---------LSIIVEEILYP 127
            +    +    P       +   +T     DV+ ID                        
Sbjct: 60  AMNCPNQVGGEPCNDCY--ICQAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLA 117

Query: 128 AMEDFQLDLMVGEGPSA-----RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             + + +D +      A     ++++        I ATT +  +   +  R         
Sbjct: 118 TYKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQ-RFEFKS 176

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            ++ D++  +       GL   ++A   IA R+ G  R A  +L +    ++        
Sbjct: 177 IKVTDIQEHLAAILTKEGLIFDEQALTIIARRAEGGMRDALSILDQALSLSQDQQVTLEI 236

Query: 243 REIADAALLRLAID------KMGFDQLDLRYLTMIARNFG 276
            E    ++   A+D      + G     L++L  +     
Sbjct: 237 AEEITGSISLRALDDYVASLRQGDSVTALQHLQTLFDQGK 276


>gi|160872052|ref|ZP_02062184.1| DNA polymerase III subunit tau [Rickettsiella grylli]
 gi|159120851|gb|EDP46189.1| DNA polymerase III subunit tau [Rickettsiella grylli]
          Length = 523

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 53/266 (19%), Positives = 94/266 (35%), Gaps = 28/266 (10%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARE 77
               RP++ +E  GQ   C  LK  +     R + + H  LF G  G+GKTTLA+++A+ 
Sbjct: 7   ARKYRPQSFDELIGQESTCRILKNAL-----RTQRIHHAYLFTGTRGVGKTTLARLLAKC 61

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMED 131
           L    + T  P   +     A+  N    D++ +D   R  +     L       P+   
Sbjct: 62  LNCQTQITPEP-CNQCISCQAIHANRFT-DLIEVDAASRTKVEDTRDLLADVHYTPSQGR 119

Query: 132 FQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
           +++ L+               ++++        + ATT    L   +  R  +   L   
Sbjct: 120 YKIYLIDEVHMLSSHSFNALLKTLEEPPPHVIFLLATTDTQRLPATILSRC-LQFHLKTI 178

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
               +   +    K   +    EA   +A  ++G+ R A  LL +      +A+      
Sbjct: 179 TTVQISNQLANILKKEKIPFEPEALAPLAQAAQGSLRDALSLLDQA-----IAYTNQNLT 233

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLT 269
           +     LL           LD   L 
Sbjct: 234 KQDINTLLGHVAHSEIIQLLDALILE 259


>gi|315173519|gb|EFU17536.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
           TX1346]
          Length = 586

 Score = 62.8 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 50/294 (17%), Positives = 99/294 (33%), Gaps = 30/294 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           R +  ++  GQ      LK  I     + +     LF GP G GKT+ A++ A+ +    
Sbjct: 11  RSQRFDDVVGQKAITQTLKNAI----VQKKTSHAYLFTGPRGTGKTSAAKIFAKAINCKH 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P      +    +T     DV+ ID      +  +  I ++  Y   +      +
Sbjct: 67  SQDGEP--CNVCETCVAITEGRLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQAEYKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT    +   +  R            +D+
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRTQ-RFDFKRISTQDI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              +    +   L   ++A   I   + G  R A  +L +   F++            + 
Sbjct: 184 VDHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSILDQTISFSDEKV-------TLED 236

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           A+       + ++ +D      +A +      G+E+I     E R  +EDL+  
Sbjct: 237 AMQVTG--SLTYEMMDHYIQCCVAGDVERALEGLESILGEGKEARRFLEDLLLY 288


>gi|315149916|gb|EFT93932.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
           TX0012]
          Length = 586

 Score = 62.8 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 50/294 (17%), Positives = 99/294 (33%), Gaps = 30/294 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           R +  ++  GQ      LK  I     + +     LF GP G GKT+ A++ A+ +    
Sbjct: 11  RSQRFDDVVGQKAITQTLKNAI----VQKKTSHAYLFTGPRGTGKTSAAKIFAKAINCKH 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P      +    +T     DV+ ID      +  +  I ++  Y   +      +
Sbjct: 67  SQDGEP--CNVCETCVAITEGRLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQAEYKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT    +   +  R            +D+
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRTQ-RFDFKRISTQDI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              +    +   L   ++A   I   + G  R A  +L +   F++            + 
Sbjct: 184 VDHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSILDQTISFSDEKV-------TLED 236

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           A+       + ++ +D      +A +      G+E+I     E R  +EDL+  
Sbjct: 237 AMQVTG--SLTYEMMDHYIQCCVAGDVERALEGLESILGEGKEARRFLEDLLLY 288


>gi|314969354|gb|EFT13452.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL037PA1]
          Length = 982

 Score = 62.8 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 52/259 (20%), Positives = 79/259 (30%), Gaps = 25/259 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T +E  G+      LK  I   +         LF GP G GKTT A+++AR
Sbjct: 134 ALYRRYRPETFDEVIGEDHVIEPLKRAILNNRVNHAY----LFSGPRGCGKTTTARILAR 189

Query: 77  ELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAM 129
            L      T  P        DLA         DV+ ID      +     + E   +  +
Sbjct: 190 ALNCEQGPTPTPCGTCQSCRDLAC--GGPGSIDVIEIDAASHGGVDDARDLRERAFFAPV 247

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDR---FGIP 177
                  ++ E             + V+        I ATT    +   ++ R   +   
Sbjct: 248 HSRYKIYIIDEAHMVTPQGFNALLKLVEEPPPHVKFIFATTEPEKVIGTIRSRTHHYPFR 307

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
           +      +E L  +  +G      AV            R +  +  +LL    D      
Sbjct: 308 LVPPKVLVEYLAELCGKGGIAVAPAVLPLVVRAGGGSVRDSLSVLDQLLGGAADGHVSYE 367

Query: 238 AKTITREIADAALLRLAID 256
                      ALL   +D
Sbjct: 368 QAAALLGYTPEALLDEIVD 386


>gi|257416948|ref|ZP_05593942.1| DNA-directed DNA polymerase III [Enterococcus faecalis AR01/DG]
 gi|257158776|gb|EEU88736.1| DNA-directed DNA polymerase III [Enterococcus faecalis ARO1/DG]
          Length = 586

 Score = 62.8 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 50/294 (17%), Positives = 99/294 (33%), Gaps = 30/294 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           R +  ++  GQ      LK  I     + +     LF GP G GKT+ A++ A+ +    
Sbjct: 11  RSQRFDDVVGQKAITQTLKNAI----VQKKTSHAYLFTGPRGTGKTSAAKIFAKAINCKH 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P      +    +T     DV+ ID      +  +  I ++  Y   +      +
Sbjct: 67  SQDGEP--CNVCETCVAITEGRLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQAEYKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT    +   +  R            +D+
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRTQ-RFDFKRISTQDI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              +    +   L   ++A   I   + G  R A  +L +   F++            + 
Sbjct: 184 VDHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSILDQTISFSDEKV-------TLED 236

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           A+       + ++ +D      +A +      G+E+I     E R  +EDL+  
Sbjct: 237 AMQVTG--SLTYEMMDHYIQCCVAGDVERALEGLESILGEGKEARRFLEDLLLY 288


>gi|257084256|ref|ZP_05578617.1| DNA-directed DNA polymerase III [Enterococcus faecalis Fly1]
 gi|256992286|gb|EEU79588.1| DNA-directed DNA polymerase III [Enterococcus faecalis Fly1]
          Length = 586

 Score = 62.8 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 50/294 (17%), Positives = 99/294 (33%), Gaps = 30/294 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           R +  ++  GQ      LK  I     + +     LF GP G GKT+ A++ A+ +    
Sbjct: 11  RSQRFDDVVGQKAITQTLKNAI----VQKKTSHAYLFTGPRGTGKTSAAKIFAKAINCKH 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P      +    +T     DV+ ID      +  +  I ++  Y   +      +
Sbjct: 67  SQDGEP--CNVCETCVAITEGRLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQAEYKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT    +   +  R            +D+
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRTQ-RFDFKRISTQDI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              +    +   L   ++A   I   + G  R A  +L +   F++            + 
Sbjct: 184 VDHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSILDQTISFSDEKV-------TLED 236

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           A+       + ++ +D      +A +      G+E+I     E R  +EDL+  
Sbjct: 237 AMQVTG--SLTYEMMDHYIQCCVAGDVERALEGLESILGEGKEARRFLEDLLLY 288


>gi|255974819|ref|ZP_05425405.1| DNA-directed DNA polymerase III [Enterococcus faecalis T2]
 gi|307278710|ref|ZP_07559778.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
           TX0860]
 gi|255967691|gb|EET98313.1| DNA-directed DNA polymerase III [Enterococcus faecalis T2]
 gi|306504650|gb|EFM73852.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
           TX0860]
          Length = 586

 Score = 62.8 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 50/294 (17%), Positives = 99/294 (33%), Gaps = 30/294 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           R +  ++  GQ      LK  I     + +     LF GP G GKT+ A++ A+ +    
Sbjct: 11  RSQRFDDVVGQKAITQTLKNAI----VQKKTSHAYLFTGPRGTGKTSAAKIFAKAINCKH 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P      +    +T     DV+ ID      +  +  I ++  Y   +      +
Sbjct: 67  SQDGEP--CNVCETCVAITEGRLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQAEYKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT    +   +  R            +D+
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRTQ-RFDFKRISTQDI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              +    +   L   ++A   I   + G  R A  +L +   F++            + 
Sbjct: 184 VDHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSILDQTISFSDEKV-------TLED 236

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           A+       + ++ +D      +A +      G+E+I     E R  +EDL+  
Sbjct: 237 AMQVTG--SLTYEMMDHYIQCCVAGDVERALEGLESILGEGKEARRFLEDLLLY 288


>gi|227519437|ref|ZP_03949486.1| DNA polymerase III, gamma and tau subunits [Enterococcus faecalis
           TX0104]
 gi|227073049|gb|EEI11012.1| DNA polymerase III, gamma and tau subunits [Enterococcus faecalis
           TX0104]
          Length = 586

 Score = 62.8 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 50/294 (17%), Positives = 99/294 (33%), Gaps = 30/294 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           R +  ++  GQ      LK  I     + +     LF GP G GKT+ A++ A+ +    
Sbjct: 11  RSQRFDDVVGQKAITQTLKNAI----VQKKTSHAYLFTGPRGTGKTSAAKIFAKAINCKH 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P      +    +T     DV+ ID      +  +  I ++  Y   +      +
Sbjct: 67  SQDGEP--CNVCETCVAITEGRLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQAEYKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT    +   +  R            +D+
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRTQ-RFDFKRISTQDI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              +    +   L   ++A   I   + G  R A  +L +   F++            + 
Sbjct: 184 VDHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSILDQTISFSDEKV-------TLED 236

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           A+       + ++ +D      +A +      G+E+I     E R  +EDL+  
Sbjct: 237 AMQVTG--SLTYEMMDHYIQCCVAGDVERALEGLESILGEGKEARRFLEDLLLY 288


>gi|254468598|ref|ZP_05082004.1| DNA polymerase subunits gamma and tau [beta proteobacterium KB13]
 gi|207087408|gb|EDZ64691.1| DNA polymerase subunits gamma and tau [beta proteobacterium KB13]
          Length = 512

 Score = 62.8 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 52/241 (21%), Positives = 82/241 (34%), Gaps = 55/241 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+  E   GQ      LK  I       + L H  L  G  G+GKTT+A++ A+ L  +
Sbjct: 11  RPKNFETIVGQEFIVEALKNSI-----LGDRLHHAYLLSGTRGVGKTTIARIFAKCLNCH 65

Query: 82  F-----------------RSTSGPVIA-------KAGDLAALLTNL------EDRDVLFI 111
                             +S S  VI        +  ++  LL N           +  I
Sbjct: 66  TGSNPTPCCECSSCVEIDQSKSIDVIELDAASNTQVDNMRELLENANYQPTSSKYKIFII 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      +   +E+                         I ATT    +   + 
Sbjct: 126 DEVHMLSKSSFNAMLKTLEE------------------PPEHVIFILATTDPEKIPVTVI 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L     +++   +Q       +A  DEA   I+  + G+ R A  L  RV +
Sbjct: 168 SRC-LHFNLMQMTNDEISGQLQNIFYEENIAYEDEAINMISKHADGSMRDALSLADRVIN 226

Query: 232 F 232
           +
Sbjct: 227 Y 227


>gi|312951953|ref|ZP_07770841.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
           TX0102]
 gi|310630142|gb|EFQ13425.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
           TX0102]
          Length = 586

 Score = 62.8 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 50/294 (17%), Positives = 99/294 (33%), Gaps = 30/294 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           R +  ++  GQ      LK  I     + +     LF GP G GKT+ A++ A+ +    
Sbjct: 11  RSQRFDDVVGQKAITQTLKNAI----VQKKTSHAYLFTGPRGTGKTSAAKIFAKAINCKH 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P      +    +T     DV+ ID      +  +  I ++  Y   +      +
Sbjct: 67  SQDGEP--CNVCETCVAITEGRLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQAEYKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT    +   +  R            +D+
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRTQ-RFDFKRISTQDI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              +    +   L   ++A   I   + G  R A  +L +   F++            + 
Sbjct: 184 VDHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSILDQTISFSDEKV-------TLED 236

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           A+       + ++ +D      +A +      G+E+I     E R  +EDL+  
Sbjct: 237 AMQVTG--SLTYEMMDHYIQCCVAGDVERALEGLESILGEGKEARRFLEDLLLY 288


>gi|295113711|emb|CBL32348.1| DNA polymerase III, subunits gamma and tau [Enterococcus sp. 7L76]
          Length = 586

 Score = 62.8 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 50/294 (17%), Positives = 99/294 (33%), Gaps = 30/294 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           R +  ++  GQ      LK  I     + +     LF GP G GKT+ A++ A+ +    
Sbjct: 11  RSQRFDDVVGQKAITQTLKNAI----VQKKTSHAYLFTGPRGTGKTSAAKIFAKAINCKH 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P      +    +T     DV+ ID      +  +  I ++  Y   +      +
Sbjct: 67  SQDGEP--CNVCETCVAITEGRLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQAEYKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT    +   +  R            +D+
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRTQ-RFDFKRISTQDI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              +    +   L   ++A   I   + G  R A  +L +   F++            + 
Sbjct: 184 VDHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSILDQTISFSDEKV-------TLED 236

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           A+       + ++ +D      +A +      G+E+I     E R  +EDL+  
Sbjct: 237 AMQVTG--SLTYEMMDHYIQCCVAGDVERALEGLESILGEGKEARRFLEDLLLY 288


>gi|292625925|ref|XP_691712.4| PREDICTED: lon protease homolog, mitochondrial [Danio rerio]
          Length = 966

 Score = 62.8 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 46/280 (16%), Positives = 95/280 (33%), Gaps = 43/280 (15%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI  ++ R      +L F GPPG+GKT++A+ +AR L   +   S
Sbjct: 503 EDHYGMDDVKKRILEFIAVSQLRGSTQGKILCFYGPPGVGKTSIARSIARALNREYFRFS 562

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ ++    +        
Sbjct: 563 VGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLVLIDEVDKIGRGYQGDPSSALL 622

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V ++LS+   I        +  PL+DR  +     +
Sbjct: 623 ELLDPEQNANFLD-------HYLDVPVDLSKVLFICTANITDTIPEPLRDRMEMINVSGY 675

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
              E L       A+   +            + +  P     L+R+    + V + +   
Sbjct: 676 VAQEKLA-----IAEKYLVPQLRTLCGLDEQKVKINPEALNLLIRQYCRESGVRNLQKQV 730

Query: 243 REIADA-ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVG 281
            ++    A   ++ ++   D           +++ G P+ 
Sbjct: 731 EKVFRKVAFRIVSGEETAVDVTSNNL-----QDYVGKPLF 765


>gi|227115284|ref|ZP_03828940.1| DNA polymerase III subunits gamma and tau [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 690

 Score = 62.8 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 82/242 (33%), Gaps = 25/242 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T     GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFTHVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
                       D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  EQGVTATPCGQCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++        + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  +++  +   L     A   +A  + G+ R A  L     D A       +T      
Sbjct: 184 RAHLEQVLQAENLVSEPRALQLLARAADGSLRDALSL----TDQAIAMGQGQVTTASVSQ 239

Query: 249 AL 250
            L
Sbjct: 240 ML 241


>gi|257420166|ref|ZP_05597160.1| DNA-directed DNA polymerase III [Enterococcus faecalis T11]
 gi|257161994|gb|EEU91954.1| DNA-directed DNA polymerase III [Enterococcus faecalis T11]
          Length = 586

 Score = 62.8 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 50/294 (17%), Positives = 99/294 (33%), Gaps = 30/294 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           R +  ++  GQ      LK  I     + +     LF GP G GKT+ A++ A+ +    
Sbjct: 11  RSQRFDDVVGQKAITQTLKNAI----VQKKTSHAYLFTGPRGTGKTSAAKIFAKAINCKH 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P      +    +T     DV+ ID      +  +  I ++  Y   +      +
Sbjct: 67  SQDGEP--CNVCETCVAITEGRLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQAEYKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT    +   +  R            +D+
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRTQ-RFDFKRISTQDI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              +    +   L   ++A   I   + G  R A  +L +   F++            + 
Sbjct: 184 VDHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSILDQTISFSDEKV-------TLED 236

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           A+       + ++ +D      +A +      G+E+I     E R  +EDL+  
Sbjct: 237 AMQVTG--SLTYEMMDHYIQCCVAGDVERALEGLESILGEGKEARRFLEDLLLY 288


>gi|260791339|ref|XP_002590697.1| hypothetical protein BRAFLDRAFT_125553 [Branchiostoma floridae]
 gi|229275893|gb|EEN46708.1| hypothetical protein BRAFLDRAFT_125553 [Branchiostoma floridae]
          Length = 329

 Score = 62.8 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 42/238 (17%), Positives = 76/238 (31%), Gaps = 38/238 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA- 75
             +   RP+ + E     +  S ++ F++      + L H+LF GPPG GKT+     A 
Sbjct: 11  PWVEKYRPKEMTELISHQDIISTIQRFLD-----EDRLPHLLFYGPPGTGKTSTILACAR 65

Query: 76  -----RELGVNFRSTSGPVIAKAGDLAA-LLTNLEDRDVL-------FIDEIHRLSIIVE 122
                RE        +       G +   +L     R +         +DE   ++   +
Sbjct: 66  RLYADREFNSMVLELNASDDRGIGIVRGPVLQFASTRTIFKRGFKLVILDEADAMTGDAQ 125

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             L   ME F       E      +   LS+                +Q R     R   
Sbjct: 126 NALRRVMEKF------TENTRFCLICNYLSKIIP------------AIQSRC-TRFRFGP 166

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
             ++ +   ++   +   + VTD+    I   + G  R    +L+      +V     
Sbjct: 167 LGVDQMLPRLEHVIQEEKVDVTDDGKKAILQLANGDMRRVLNILQSTSMAHDVVDEDN 224


>gi|77166051|ref|YP_344576.1| DNA-directed DNA polymerase [Nitrosococcus oceani ATCC 19707]
 gi|254436358|ref|ZP_05049864.1| DNA polymerase III, subunits gamma and tau, putative [Nitrosococcus
           oceani AFC27]
 gi|76884365|gb|ABA59046.1| DNA polymerase III, gamma subunit / DNA polymerase III, tau subunit
           [Nitrosococcus oceani ATCC 19707]
 gi|207088048|gb|EDZ65321.1| DNA polymerase III, subunits gamma and tau, putative [Nitrosococcus
           oceani AFC27]
          Length = 529

 Score = 62.8 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 44/240 (18%), Positives = 69/240 (28%), Gaps = 53/240 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPR   +  GQ          +     +       LF G  G+GKTTLA+++A+ L    
Sbjct: 11  RPRDFTQVVGQEHVV----RALTNGLDKGRLHHAFLFTGTRGVGKTTLARILAKSLNCKE 66

Query: 83  RSTS------------------------GPVIAKAGDLAALLTNL------EDRDVLFID 112
              S                                D   LL N+          V  ID
Sbjct: 67  GVRSTPCGKCQNCQAIDGGNFVDLIEVDAASRTGVDDTRELLENVHYAPSRGHYKVYLID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H  S      L   +E+                         + ATT    L   +  
Sbjct: 127 EVHMFSTSSFNALLKTLEE------------------PPPHIKFLLATTEPKKLPVTVLS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R  +   L     + +   +    +   +     A   IA  + G+ R A  LL +  ++
Sbjct: 169 RC-LQFNLRRITPKAIAEHLNSILEAEEIPSESYALTLIARAAEGSVRDALSLLDQAINY 227


>gi|327301329|ref|XP_003235357.1| DNA replication factor C subunit [Trichophyton rubrum CBS 118892]
 gi|326462709|gb|EGD88162.1| DNA replication factor C subunit [Trichophyton rubrum CBS 118892]
          Length = 397

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 60/187 (32%), Gaps = 30/187 (16%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
                   +   RP TL++ +G  +  + +  F+++ +     L H+L  GPPG GKT+ 
Sbjct: 40  EAGDNLPWVEKYRPDTLDDVSGHQDIIATINRFVDSNR-----LPHLLLYGPPGTGKTST 94

Query: 71  AQVVAR------ELGVNFRSTSGPVIAKAGDLAALLT-----------------NLEDRD 107
              +AR       +       +         +   +                   L    
Sbjct: 95  ILALARRIYGSKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSTAPSSGSGLGAFK 154

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLD--LMVGEGPSARSVKINLSRFTLIAATTRVGL 165
           ++ +DE   ++   +  L   ME +  +    +    + +     LSR T    +     
Sbjct: 155 LIILDEADAMTSAAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEK 214

Query: 166 LTNPLQD 172
               L D
Sbjct: 215 DIRRLVD 221


>gi|325096741|gb|EGC50051.1| activator 1 subunit 3 [Ajellomyces capsulatus H88]
          Length = 443

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 75/220 (34%), Gaps = 13/220 (5%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP TLE+ +G  +  S +  FI+        L H+L  GPPG GKT+    +AR
Sbjct: 46  PWVEKYRPNTLEDVSGHHDIISTINRFID-----KNRLPHLLLYGPPGTGKTSTILALAR 100

Query: 77  ------ELGVNFRSTSGPVIAKAGDLAALLTN-LEDRDVLFIDEIHRLSIIVEEILYPAM 129
                  +       +         +   +      + +  +    +    +       +
Sbjct: 101 RIYGVKNMRQMVLELNASDDRGIDVVRDQIKTFASTKQIFSVAPSTKSESTLGAFKLIIL 160

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           ++        +    R ++   +             L+  L  R     R +  + ED++
Sbjct: 161 DEADAMTATAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRC-TRFRFSPLKEEDIR 219

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
            +V +  +   + +  EA   +   S+G  R A  +L+  
Sbjct: 220 VLVDQVVEKERVRIQPEAIDSLVQLSKGDMRRALNVLQAC 259


>gi|284928911|ref|YP_003421433.1| membrane protease FtsH catalytic subunit [cyanobacterium UCYN-A]
 gi|284809370|gb|ADB95075.1| membrane protease FtsH catalytic subunit [cyanobacterium UCYN-A]
          Length = 586

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 63/293 (21%), Positives = 110/293 (37%), Gaps = 28/293 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           + E+  G  EA   L+  +   K         A+    VL VGPPG GKT LA+ +A E 
Sbjct: 134 SFEDVAGIDEAKEELQEIVTFLKEPEKFTAIGAKIPKGVLLVGPPGTGKTLLAKAIAGEA 193

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG           A  +  L    ++    ++FIDEI  +            +
Sbjct: 194 GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENTPCLIFIDEIDAVGRQRGVGYGGGND 253

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E           S   LIAAT R  +L   L    RF   + +++ +++
Sbjct: 254 EREQTLNQLLTEMDGFEGN----SGIILIAATNRPDVLDAALSRPGRFDRQVIVDYPDLK 309

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++  ++   ++ +             T      LL     F      KTI+    
Sbjct: 310 GRQGILEVHSRNKKISESVSLETIARRTPGFTGADLANLLNEAAIFTARRRKKTISMTEI 369

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
             A+ R+     G   +D +   +IA +  G       +   +    +++E +
Sbjct: 370 YDAIDRVVAGMEGAPLIDSKSKRLIAYHEIGH-----ALVGTIIPEHESVEKV 417


>gi|239980932|ref|ZP_04703456.1| DNA polymerase III subunits gamma and tau [Streptomyces albus
           J1074]
          Length = 406

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 58/173 (33%), Gaps = 22/173 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP +  E  GQ      L+  +   +         LF GP G GKTT A+++AR
Sbjct: 5   ALYRRYRPESFAEVIGQEHVTDPLQQALRNNRVNHAY----LFSGPRGCGKTTSARILAR 60

Query: 77  ELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFIDEIHRLSII------VEEILYPA 128
            L      T  P        DLA         DV+ ID      +        +    PA
Sbjct: 61  CLNCEQGPTPDPCGTCQSCQDLA--RNGPGSIDVIEIDAASHGGVDDARDLREKAFFGPA 118

Query: 129 MEDFQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
              +++ ++         G     + V+        I ATT    +   ++ R
Sbjct: 119 SSRYKIYIIDEAHMVTSAGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSR 171


>gi|194884696|ref|XP_001976314.1| GG20087 [Drosophila erecta]
 gi|190659501|gb|EDV56714.1| GG20087 [Drosophila erecta]
          Length = 737

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 60/271 (22%), Positives = 100/271 (36%), Gaps = 24/271 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T E+  G  EA   LK  +E  K+         +    VL VGPPG GKT LA+ VA E 
Sbjct: 299 TFEDVKGCDEAKQELKEVVEFLKSPEKFSNLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 358

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F   +GP          A  +  L    + R   V+FIDEI  +       +     
Sbjct: 359 KVPFFHAAGPEFDEVLVGQGARRVRDLFKAAKARAPCVIFIDEIDSVGAKRTNSVLHPYA 418

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
           +  ++ ++ E               ++ AT R   L   L    RF + + ++  +    
Sbjct: 419 NQTINQLLSEMDGFHQNAG----VIVLGATNRRDDLDQALLRPGRFDVEVMVSTPDFTGR 474

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAM-RSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           K I+     LT +   +     +A   S  T      ++ +    A +  A+T++ +  +
Sbjct: 475 KEIL--SLYLTKILHDEIDLDMLARGTSGFTGADLENMINQAALRAAIDGAETVSMKHLE 532

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
            A  ++ +      +L       I     GG
Sbjct: 533 TARDKVLMGPERKARLPDEEANTITAYHEGG 563


>gi|147919922|ref|YP_686325.1| replication factor C, large subunit [uncultured methanogenic
           archaeon RC-I]
 gi|121687915|sp|Q0W3P4|RFCL_UNCMA RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|110621721|emb|CAJ36999.1| replication factor C, large subunit [uncultured methanogenic
           archaeon RC-I]
          Length = 553

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 44/254 (17%), Positives = 88/254 (34%), Gaps = 33/254 (12%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
                RP +L +  G   A   L+ + E      +A   V+  G PG+GKT+ A  +A +
Sbjct: 10  WTEKYRPVSLADIVGNDAAVKALRQWAETFGTGKKA---VILYGGPGVGKTSAALALAHD 66

Query: 78  LGVNFRSTSGPV---------IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           +G ++   +            IA    +A        R ++ +DE           L+  
Sbjct: 67  MGWDYIELNASDVRTKDAINRIAGPAAMAGTFEGTGGRRLVILDEADN--------LHGN 118

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
            +      ++    +A    I ++          +  ++ PL++               +
Sbjct: 119 YDRGGEAAIINVIRNASQPVILIA--------NDMYAMSKPLRESALQIQFRAILST-SV 169

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA---EVAHAKTITREI 245
             ++++     GL    EA  +IA R+    R A   L+     +    VA   T  R++
Sbjct: 170 AKVLRKVCANEGLKCDPEALMKIAERTN-DLRSAINDLQAAAQGSGQVTVADVSTGDRDV 228

Query: 246 ADAALLRLAIDKMG 259
            +     + +   G
Sbjct: 229 PETIFKVMGMIFRG 242


>gi|50914432|ref|YP_060404.1| DNA polymerase III subunits gamma and tau [Streptococcus pyogenes
           MGAS10394]
 gi|209559603|ref|YP_002286075.1| DNA polymerase III subunits gamma and tau [Streptococcus pyogenes
           NZ131]
 gi|50903506|gb|AAT87221.1| DNA polymerase III subunit gamma/tau [Streptococcus pyogenes
           MGAS10394]
 gi|209540804|gb|ACI61380.1| DNA polymerase III subunits gamma and tau [Streptococcus pyogenes
           NZ131]
          Length = 556

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 56/304 (18%), Positives = 99/304 (32%), Gaps = 48/304 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     R +T +E  GQ    + LK  +E+ K         LF GP G GKT+ A++ A+
Sbjct: 4   ALYRKYRSQTFDEMVGQSVISTTLKQAVESGKISHAY----LFSGPRGTGKTSAAKIFAK 59

Query: 77  ELGVNFR---------------------------STSGPVIAKAGDLAALLTNLEDR--- 106
            +    +                           + S   + +  D+    T    R   
Sbjct: 60  AMNCPNQVDGEPCNQCDICRDITNGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSRATY 119

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDFQ--LDLMVGEGPSARSVKINLSRFTLIAATTRVG 164
            V  IDE+H LS      L   +E+    +  ++      +     LSR           
Sbjct: 120 KVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKQ 179

Query: 165 LLTNPLQDRFGIPIRLN--FYEIEDLKTIVQRGAKLTGLA-VTDEAACEIAMRSRGTPRI 221
                +++     +      YE++ L  I +R       A    + A  ++  ++ T  I
Sbjct: 180 ---KAIREHLAWVLDKEGIAYEVDALNLIARRAEGGMRDALSILDQALSLSPDNQVTIAI 236

Query: 222 AGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDL------RYLTMIARNF 275
           A  +   +   A   + + +++E A  AL  L         +         YL  +    
Sbjct: 237 AEEITGSISILALGDYVRYVSQEQATQALAALETIYDSGKSMSRFATDLLTYLRDLLVVK 296

Query: 276 GGGP 279
            GG 
Sbjct: 297 AGGD 300


>gi|89094005|ref|ZP_01166949.1| DNA polymerase subunits gamma and tau [Oceanospirillum sp. MED92]
 gi|89081679|gb|EAR60907.1| DNA polymerase subunits gamma and tau [Oceanospirillum sp. MED92]
          Length = 632

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 86/240 (35%), Gaps = 27/240 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP   +E  GQ      LK  + A     + L H  LF G  G+GKT++A++ A+ L   
Sbjct: 11  RPAKFQEMVGQEHV---LKALVNA--LDDDRLHHAYLFTGTRGVGKTSIARLFAKSLNCE 65

Query: 82  FRSTSGP--VIAKAGDLAALLTNLEDRDVLFIDEIHRLSII-----VEEILYPAMEDFQL 134
              +S P  V +   ++A         D++ +D   R  +      +E + Y        
Sbjct: 66  TGVSSTPCGVCSACKEIAEGRFV----DLIEVDAASRTKVEDTRELMENVQYAPTHGRYK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             ++ E             ++++        + ATT    L   +  R  +   L     
Sbjct: 122 VYLIDEVHMLSTHSFNALLKTLEEPPPHVKFLLATTDPQKLPITILSRC-LQFNLKNLIP 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           E +   +        ++  + A   +A  + G+ R A  L  +   F     A+T  R +
Sbjct: 181 ERIVNHLTHVLTQEQISFEEPALWLLARSADGSMRDAMSLTDQAIAFGAGQIAETDVRAM 240


>gi|256960974|ref|ZP_05565145.1| DNA-directed DNA polymerase III [Enterococcus faecalis Merz96]
 gi|293384387|ref|ZP_06630270.1| DNA polymerase III, gamma and tau subunit [Enterococcus faecalis
           R712]
 gi|293388163|ref|ZP_06632686.1| DNA polymerase III, gamma and tau subunit [Enterococcus faecalis
           S613]
 gi|312908210|ref|ZP_07767180.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
           DAPTO 512]
 gi|312978640|ref|ZP_07790371.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
           DAPTO 516]
 gi|256951470|gb|EEU68102.1| DNA-directed DNA polymerase III [Enterococcus faecalis Merz96]
 gi|291078286|gb|EFE15650.1| DNA polymerase III, gamma and tau subunit [Enterococcus faecalis
           R712]
 gi|291082453|gb|EFE19416.1| DNA polymerase III, gamma and tau subunit [Enterococcus faecalis
           S613]
 gi|310625799|gb|EFQ09082.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
           DAPTO 512]
 gi|311288542|gb|EFQ67098.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
           DAPTO 516]
          Length = 586

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 50/294 (17%), Positives = 99/294 (33%), Gaps = 30/294 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           R +  ++  GQ      LK  I     + +     LF GP G GKT+ A++ A+ +    
Sbjct: 11  RSQRFDDVVGQKAITQTLKNAI----VQKKTSHAYLFTGPRGTGKTSAAKIFAKAINCKH 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P      +    +T     DV+ ID      +  +  I ++  Y   +      +
Sbjct: 67  SQDGEP--CNVCETCVAITEGRLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQAEYKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT    +   +  R            +D+
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRTQ-RFDFKRISTQDI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              +    +   L   ++A   I   + G  R A  +L +   F++            + 
Sbjct: 184 VDHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSILDQTISFSDEKV-------TLED 236

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           A+       + ++ +D      +A +      G+E+I     E R  +EDL+  
Sbjct: 237 AMQVTG--SLTYEMMDHYIQCCVAGDVERALEGLESILGEGKEARRFLEDLLLY 288


>gi|19746336|ref|NP_607472.1| DNA polymerase III subunits gamma and tau [Streptococcus pyogenes
           MGAS8232]
 gi|19748530|gb|AAL97971.1| DNA polymerase III gamma/tau subunits [Streptococcus pyogenes
           MGAS8232]
          Length = 556

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 56/304 (18%), Positives = 99/304 (32%), Gaps = 48/304 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     R +T +E  GQ    + LK  +E+ K         LF GP G GKT+ A++ A+
Sbjct: 4   ALYRKYRSQTFDEMVGQSVISTTLKQAVESGKISHAY----LFSGPRGTGKTSAAKIFAK 59

Query: 77  ELGVNFR---------------------------STSGPVIAKAGDLAALLTNLEDR--- 106
            +    +                           + S   + +  D+    T    R   
Sbjct: 60  AMNCPNQVDGEPCNQCDICRDITNGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSRATY 119

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDFQ--LDLMVGEGPSARSVKINLSRFTLIAATTRVG 164
            V  IDE+H LS      L   +E+    +  ++      +     LSR           
Sbjct: 120 KVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKQ 179

Query: 165 LLTNPLQDRFGIPIRLN--FYEIEDLKTIVQRGAKLTGLA-VTDEAACEIAMRSRGTPRI 221
                +++     +      YE++ L  I +R       A    + A  ++  ++ T  I
Sbjct: 180 ---KAIREHLAWVLDKEGIAYEVDALNLIARRAEGGMRDALSILDQALSLSPDNQVTIAI 236

Query: 222 AGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDL------RYLTMIARNF 275
           A  +   +   A   + + +++E A  AL  L         +         YL  +    
Sbjct: 237 AEEITGSISILALGGYVRYVSQEQATQALAALETIYDSGKSMSRFATDLLTYLRDLLVVK 296

Query: 276 GGGP 279
            GG 
Sbjct: 297 AGGD 300


>gi|77360144|ref|YP_339719.1| DnaX, DNA polymerase III, gamma/tau subunits [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76875055|emb|CAI86276.1| putative DnaX, DNA polymerase III, gamma/tau subunits
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 842

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 55/265 (20%), Positives = 81/265 (30%), Gaps = 59/265 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGV- 80
           RP+T  E  GQ      L   +         L H  LF G  G+GKTT+A++ A+ L   
Sbjct: 11  RPQTFHELVGQSHVKQALVNALT-----QNRLHHAYLFTGTRGVGKTTIARIFAKSLNCD 65

Query: 81  -----------------------NFRSTSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                  +          K  D   +L N++         V  I
Sbjct: 66  EGISANPCGQCSSCKDIEAGRYIDLLEIDAASRTKVEDTREILDNVQYAPTRGRYKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSKHSFNALLKTLEE------------------PPEHVKFLLATTDPQKLPVTIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   LN     ++KT ++       L   D+A   IA  + G+ R A  L     D
Sbjct: 168 SRC-LQFNLNALSQSEIKTQLEHVLTHEKLNFDDDALRIIAKAADGSMRDALSL----TD 222

Query: 232 FAEVAHAKTITREIADAALLRLAID 256
            A       I  +     L  +   
Sbjct: 223 QAIAQTNGDINNQAVQTMLGLMDTH 247


>gi|71654812|ref|XP_816018.1| replication factor C, subunit 4 [Trypanosoma cruzi strain CL
           Brener]
 gi|70881118|gb|EAN94167.1| replication factor C, subunit 4, putative [Trypanosoma cruzi]
          Length = 340

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 51/301 (16%), Positives = 94/301 (31%), Gaps = 61/301 (20%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+++E+  G  +A S L+V      ++   L ++L  GPPG GKTT    +AR
Sbjct: 7   PWVEKYRPKSMEDIVGNADAVSRLRVI-----SKEGNLPNLLLCGPPGTGKTTSVLCLAR 61

Query: 77  -------------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDR----------- 106
                              EL  +       V  K    A     L  +           
Sbjct: 62  TLLSDQDGGDTTALKEAVLELNASDDRGLDVVREKIKLFAQTKKTLPQKVNESSQQKINL 121

Query: 107 -DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
             ++ +DE   ++   ++ L                   R+++++ S      A      
Sbjct: 122 HKIVILDEADSMTPAAQQALR------------------RTMELHSSTTRFAFACNNSHK 163

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           +  P+Q R  +         + LK  +    +   +  TD+    +   + G  R A   
Sbjct: 164 IIEPIQSRCAVVRFKKLTHADILKR-LTYIIQQENVTYTDDGLEALLYLAEGDLRSAVNA 222

Query: 226 LRRVRD-FAEVAHAKTITREIADAALLRLAIDKMGFDQLDL-----RYLTMIARNFGGGP 279
           L+     +  V              LL  +I      + DL         ++ R +    
Sbjct: 223 LQATHSGYGMVNAENVFKVCDQPHPLLVESIMDGCLQKKDLPSAHKELQRLLGRGYAASD 282

Query: 280 V 280
           V
Sbjct: 283 V 283


>gi|329903603|ref|ZP_08273561.1| DNA polymerase III subunits gamma and tau [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327548263|gb|EGF32958.1| DNA polymerase III subunits gamma and tau [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 287

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 54/282 (19%), Positives = 99/282 (35%), Gaps = 34/282 (12%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARE 77
               RPR+ +   GQ      L   ++  +     L H  LF G  G+GKTTL++++A+ 
Sbjct: 14  ARKYRPRSFDTLVGQEHVVRALSHALDTGR-----LHHAYLFTGTRGVGKTTLSRILAKA 68

Query: 78  LGVNFRSTSGPVIAKA-GDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAM 129
                   +G + A   G  AA       R V +I+        +  ++ ++E+ +Y   
Sbjct: 69  FNCIGIDGNGGITATPCGVCAACSAIDAGRFVDYIELDAASNRGVEEMAQLLEQAVYAPS 128

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                  M+ E             ++++        I ATT    +   +  R  +   L
Sbjct: 129 NARFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRC-LQFNL 187

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
                  +   +       G+     A   +A  + G+ R A  L  +   +A    A T
Sbjct: 188 KQMPPGHIVAHLDDILGQEGIGFETPALRLLAQGAHGSMRDALSLTDQAIAYA----AGT 243

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGI 282
           +T +     L  L    +      +R L  +A   G G + +
Sbjct: 244 VTLDAVQGMLGALDQSYL------IRLLDALAAQDGAGLLAV 279


>gi|262165292|ref|ZP_06033029.1| DNA polymerase III subunits gamma and tau [Vibrio mimicus VM223]
 gi|262025008|gb|EEY43676.1| DNA polymerase III subunits gamma and tau [Vibrio mimicus VM223]
          Length = 692

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 52/265 (19%), Positives = 82/265 (30%), Gaps = 57/265 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP    E  GQ    + L    E A A+       LF G  G+GKTT+ ++ A+ L    
Sbjct: 11  RPTRFSEVVGQTHVLTAL----ENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCET 66

Query: 83  ------------------------RSTSGPVIAKAGDLAALLTNLEDRD------VLFID 112
                                            K  D   LL N++ +       V  ID
Sbjct: 67  GITATPCGQCATCKEIDQGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRFKVYLID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS      L   +E+                         + ATT    L   +  
Sbjct: 127 EVHMLSRHSFNALLKTLEE------------------PPEYVKFLLATTDPQKLPVTILS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R  +   L    +E+++  + +  +   +    +A   +A  + G+ R A  L     D 
Sbjct: 169 RC-LQFHLKPISVENIQQQLDKVLQAEQITSDSKALNLLAHAADGSMRDALSL----TDQ 223

Query: 233 AEVAHAKTITREIADAALLRLAIDK 257
           A       +  +I    L  L  D 
Sbjct: 224 AIALGNGVVKSDIVAHMLGTLDTDH 248


>gi|257421610|ref|ZP_05598600.1| DNA polymerase III subunits gamma and tau [Enterococcus faecalis
           X98]
 gi|257163434|gb|EEU93394.1| DNA polymerase III subunits gamma and tau [Enterococcus faecalis
           X98]
 gi|315155639|gb|EFT99655.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
           TX0043]
          Length = 586

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 50/294 (17%), Positives = 99/294 (33%), Gaps = 30/294 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           R +  ++  GQ      LK  I     + +     LF GP G GKT+ A++ A+ +    
Sbjct: 11  RSQRFDDVVGQKAITQTLKNAI----VQKKTSHAYLFTGPRGTGKTSAAKIFAKAINCKH 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P      +    +T     DV+ ID      +  +  I ++  Y   +      +
Sbjct: 67  SQDGEP--CNVCETCVAITEGRLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQAEYKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT    +   +  R            +D+
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRTQ-RFDFKRISTQDI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              +    +   L   ++A   I   + G  R A  +L +   F++            + 
Sbjct: 184 VDHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSILDQTISFSDEKV-------TLED 236

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           A+       + ++ +D      +A +      G+E+I     E R  +EDL+  
Sbjct: 237 AMQVTG--SLTYEMMDHYIQCCVAGDVERALEGLESILGEGKEARRFLEDLLLY 288


>gi|163801914|ref|ZP_02195811.1| DNA polymerase III subunits gamma and tau [Vibrio sp. AND4]
 gi|159174422|gb|EDP59226.1| DNA polymerase III subunits gamma and tau [Vibrio sp. AND4]
          Length = 730

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 85/249 (34%), Gaps = 25/249 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP   ++  GQ    + L    E A A+       LF G  G+GKT++ ++ A+ L    
Sbjct: 11  RPSKFDQVVGQSHVLTAL----ENALAQNRLHHAYLFSGTRGVGKTSIGRLFAKGLNCET 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
             T+ P      D    +      D+L ID   R  +     L       PA   F++ L
Sbjct: 67  GITANP--CGKCDTCREIDEGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++        + ATT    L   +  R  +   L    ++ +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRC-LQFHLKPISVDVI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              +        ++    A   I+  + G+ R A  L     D A      TI  +I   
Sbjct: 184 HQQLDHILAKEQVSAEARALGMISHAADGSMRDALSL----TDQAIALGNGTIQTDIVSH 239

Query: 249 ALLRLAIDK 257
            L  +  D+
Sbjct: 240 MLGTIDTDQ 248


>gi|88812993|ref|ZP_01128236.1| DNA polymerase III subunits gamma and tau [Nitrococcus mobilis
           Nb-231]
 gi|88789771|gb|EAR20895.1| DNA polymerase III subunits gamma and tau [Nitrococcus mobilis
           Nb-231]
          Length = 553

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 55/255 (21%), Positives = 86/255 (33%), Gaps = 34/255 (13%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPRT  E  GQ          +    A        LF G  G+GKTT+A+V+A+ L    
Sbjct: 11  RPRTFSEMAGQEHVL----RALCNGLANGRCHHAYLFAGTRGVGKTTIARVLAKCLNCE- 65

Query: 83  RSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILY------PAMEDFQL 134
              SG      G+  A     + R  D++ +D   R  +     L       PA   F++
Sbjct: 66  --RSGITAEPCGECTACREIDQGRFVDLIEVDAASRTRVEDTRELLDNVQYAPARGRFKI 123

Query: 135 DLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR---FGIPIRLNFY 183
            L+               ++++        + ATT    L   +  R   F +       
Sbjct: 124 YLVDEVHMLSQHSFNALLKTLEEPPPHVKFLLATTDPQKLPATVLSRCLQFNLKRLPAGR 183

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
             + L  I+ R     G+     A   +   + G+ R A  LL    D A    A  +  
Sbjct: 184 IADYLTEILAR----EGVGAEPAALRRLGHAADGSMRDALSLL----DQAIAYGAGAVRD 235

Query: 244 EIADAALLRLAIDKM 258
           E     L  +  D +
Sbjct: 236 EDVREMLGGIESDFL 250


>gi|147674747|ref|YP_001216522.1| DNA polymerase III subunits gamma and tau [Vibrio cholerae O395]
 gi|146316630|gb|ABQ21169.1| DNA polymerase III, subunits gamma and tau [Vibrio cholerae O395]
 gi|227012870|gb|ACP09080.1| DNA polymerase III, gamma/tau subunits [Vibrio cholerae O395]
          Length = 692

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 52/265 (19%), Positives = 82/265 (30%), Gaps = 57/265 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP    E  GQ    + L    E A A+       LF G  G+GKTT+ ++ A+ L    
Sbjct: 11  RPTRFSEVVGQSHVLTAL----ENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCET 66

Query: 83  ------------------------RSTSGPVIAKAGDLAALLTNLEDRD------VLFID 112
                                            K  D   LL N++ +       V  ID
Sbjct: 67  GITATSCGQCATCQEIDQGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRFKVYLID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS      L   +E+                         + ATT    L   +  
Sbjct: 127 EVHMLSRHSFNALLKTLEE------------------PPEYVKFLLATTDPQKLPVTILS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R  +   L    +E+++  + +      ++   +A   +A  + G+ R A  L     D 
Sbjct: 169 RC-LQFHLKPISVENIQQQLDKVLHAEQISSDSKALNLLAHAADGSMRDALSL----TDQ 223

Query: 233 AEVAHAKTITREIADAALLRLAIDK 257
           A       +  +I    L  L  D 
Sbjct: 224 AIALGNGVVKSDIVARMLGTLDTDH 248


>gi|307260724|ref|ZP_07542413.1| DNA polymerase III subunits gamma and tau [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306869563|gb|EFN01351.1| DNA polymerase III subunits gamma and tau [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 466

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 44/245 (17%), Positives = 77/245 (31%), Gaps = 55/245 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+   E  GQ    S L+  +   +     L H  LF G  G+GKT++A++ A+ L   
Sbjct: 11  RPQRFSEVVGQQHVLSALENGLREGR-----LHHAYLFSGTRGVGKTSIARLFAKGLNCE 65

Query: 82  F------------------------RSTSGPVIAKAGDLAALLTNLEDRD------VLFI 111
                                             K  D   LL N++ +       V  I
Sbjct: 66  TGITATPCGECANCKAIEEGRFIDLIEIDAASRTKVEDTRELLDNVQYKPTVGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSRHSFNALLKTLEE------------------PPEYVKFLLATTDPQKLPITIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L   +   +   ++   +   +     A  ++A  ++G+ R +  L  +   
Sbjct: 168 SRC-MQFHLRALDQAQIANHLEFILQQENIPYESVAIEKLAKAAQGSIRDSLSLTDQAIA 226

Query: 232 FAEVA 236
            +   
Sbjct: 227 VSNAN 231


>gi|256963882|ref|ZP_05568053.1| DNA-directed DNA polymerase III [Enterococcus faecalis HIP11704]
 gi|307271831|ref|ZP_07553102.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
           TX0855]
 gi|256954378|gb|EEU71010.1| DNA-directed DNA polymerase III [Enterococcus faecalis HIP11704]
 gi|306511709|gb|EFM80708.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
           TX0855]
 gi|315148740|gb|EFT92756.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
           TX4244]
          Length = 586

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 50/294 (17%), Positives = 99/294 (33%), Gaps = 30/294 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           R +  ++  GQ      LK  I     + +     LF GP G GKT+ A++ A+ +    
Sbjct: 11  RSQRFDDVVGQKAITQTLKNAI----VQKKTSHAYLFTGPRGTGKTSAAKIFAKAINCKH 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P      +    +T     DV+ ID      +  +  I ++  Y   +      +
Sbjct: 67  SQDGEP--CNVCETCVAITEGRLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQAEYKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT    +   +  R            +D+
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRTQ-RFDFKRISTQDI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              +    +   L   ++A   I   + G  R A  +L +   F++            + 
Sbjct: 184 VDHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSILDQTISFSDEKV-------TLED 236

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           A+       + ++ +D      +A +      G+E+I     E R  +EDL+  
Sbjct: 237 AMQVTG--SLTYEMMDHYIQCCVAGDVERALEGLESILGEGKEARRFLEDLLLY 288


>gi|162149236|ref|YP_001603697.1| DNA polymerase III subunits gamma and tau [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161787813|emb|CAP57411.1| putative DNA polymerase III tau subunit [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 629

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 53/256 (20%), Positives = 87/256 (33%), Gaps = 22/256 (8%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP TL++  GQ          +  A A        +  G  G+GKTT A+++AR L
Sbjct: 3   ARKYRPTTLDDLIGQDSTV----RILRNAFALGRVAHAFMLTGVRGVGKTTTARIIARAL 58

Query: 79  GV-NFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSI------IVEEILYPAM 129
                  T GP     G  A  +  L DR  DVL +D   R  +      I      P  
Sbjct: 59  NCVGPDGTGGPTADPCGVCANCVAILADRHPDVLEMDAASRTGVDDVREIIEATRFRPMQ 118

Query: 130 EDFQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
              ++ ++               ++++   ++ T + ATT +  +   +  R        
Sbjct: 119 GRMKVFIIDEVHMLSRNAFNALLKTLEEPPAQVTFVFATTELRKVPVTVLSRCQRFDLRR 178

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
             + + L     R A+  G   T +A   IA  + G+ R    LL +      V      
Sbjct: 179 VPQSD-LAAHFGRIARAEGAECTPDALALIARAADGSVRDGLSLLDQAIAQGSVEGDGAA 237

Query: 242 TREIADAALLRLAIDK 257
                  A +    D+
Sbjct: 238 PIGAERVADMLGLADR 253


>gi|15602229|ref|NP_245301.1| DNA polymerase III subunits gamma and tau [Pasteurella multocida
           subsp. multocida str. Pm70]
 gi|12720609|gb|AAK02448.1| DnaX [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 714

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 51/266 (19%), Positives = 84/266 (31%), Gaps = 59/266 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T  +  GQ    + L     +   +   L H  LF G  G+GKT++A++ A+ L   
Sbjct: 11  RPKTFSDVVGQTHILTAL-----SNGLKENRLHHAYLFSGTRGVGKTSIARLFAKGLNCV 65

Query: 82  F------------------------RSTSGPVIAKAGDLAALLTNLEDRD------VLFI 111
                                             K  D   LL N++ +       V  I
Sbjct: 66  HGVTAEPCGECEHCKAIEQGNFIDLIEIDAASRTKVEDTRELLDNVQYKPVQGRYKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSRHSFNALLKTLEE------------------PPEYVKFLLATTDPQKLPITIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L   E + +   ++       +     A  ++A  ++G+ R +  L     D
Sbjct: 168 SRC-MQFHLKALEQQQIAQHLEFILTQEKIPFEFLALEKLAKAAQGSIRDSLSL----TD 222

Query: 232 FAEVAHAKTITREIADAALLRLAIDK 257
            A       IT  +    L  L  D+
Sbjct: 223 QAIAMSNGNITLNVVHEMLGLLDDDQ 248


>gi|57238735|ref|YP_179871.1| DNA polymerase III gamma and tau chains [Ehrlichia ruminantium str.
           Welgevonden]
 gi|57160814|emb|CAH57712.1| putative DNA polymerase III, gamma subunit [Ehrlichia ruminantium
           str. Welgevonden]
          Length = 487

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 50/270 (18%), Positives = 93/270 (34%), Gaps = 35/270 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP +  +  GQ          +  A    +    +L  G  G+GKTT A++++  L    
Sbjct: 8   RPSSFNDLIGQDVLV----RILRNAFHLNKVPQSILLTGSSGIGKTTAARIISMCLNCIS 63

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
             TS P       ++  + N    DV+ ID     SI   +I+       P    F++ +
Sbjct: 64  GPTSNPCNTCNNCIS--IKNFNHPDVIEIDAASNTSIEDVKIILENSHYVPITSKFKVYI 121

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               + ++        I ATT V  +   +  R      L     E +
Sbjct: 122 IDEVHMLSNSAFNALLKVLEEPAPYVKFILATTEVKKIPVTIISRCQ-RFDLQRIPTESI 180

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              ++  AK   +   +E+   IA  S G+ R A  LL +   ++    ++  T+++   
Sbjct: 181 VNHLRIIAKEENILFDEESIKLIAYNSDGSMRNALSLLEQSAIYSNKNLSEESTKKM--- 237

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
                         ++   L  I  +   G
Sbjct: 238 -----------LGYVNRHVLLKIIESITNG 256


>gi|315094384|gb|EFT66360.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL060PA1]
          Length = 948

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 47/237 (19%), Positives = 74/237 (31%), Gaps = 23/237 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T +E  G+      LK  I   +         LF GP G GKTT A+++AR
Sbjct: 100 ALYRRYRPETFDEIIGEDHVIEPLKRAILNNRVNHAY----LFSGPRGCGKTTTARILAR 155

Query: 77  ELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAM 129
            L      T  P        DLA         DV+ ID      +     + E   +  +
Sbjct: 156 ALNCEQGPTPTPCGTCQSCRDLAC--GGPGSIDVIEIDAASHGGVDDARDLRERAFFAPV 213

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                  ++ E             + V+        I ATT    +   ++ R       
Sbjct: 214 HSRYKIYIIDEAHMVTPQGFNALLKLVEEPPPHVKFIFATTEPEKVIGTIRSR-THHYPF 272

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                + L   +       G+ V       +     G+ R +  +L ++   A   H
Sbjct: 273 RLVPPKVLVDYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVLDQLLGGAADGH 329


>gi|314965630|gb|EFT09729.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL082PA2]
          Length = 948

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 47/237 (19%), Positives = 74/237 (31%), Gaps = 23/237 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T +E  G+      LK  I   +         LF GP G GKTT A+++AR
Sbjct: 100 ALYRRYRPETFDEIIGEDHVIEPLKRAILNNRVNHAY----LFSGPRGCGKTTTARILAR 155

Query: 77  ELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAM 129
            L      T  P        DLA         DV+ ID      +     + E   +  +
Sbjct: 156 ALNCEQGPTPTPCGTCQSCRDLAC--GGPGSIDVIEIDAASHGGVDDARDLRERAFFAPV 213

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                  ++ E             + V+        I ATT    +   ++ R       
Sbjct: 214 HSRYKIYIIDEAHMVTPQGFNALLKLVEEPPPHVKFIFATTEPEKVIGTIRSR-THHYPF 272

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                + L   +       G+ V       +     G+ R +  +L ++   A   H
Sbjct: 273 RLVPPKVLVDYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVLDQLLGGAADGH 329


>gi|229544838|ref|ZP_04433563.1| DNA polymerase III, gamma and tau subunits [Enterococcus faecalis
           TX1322]
 gi|256854074|ref|ZP_05559439.1| DNA polymerase III [Enterococcus faecalis T8]
 gi|229310006|gb|EEN75993.1| DNA polymerase III, gamma and tau subunits [Enterococcus faecalis
           TX1322]
 gi|256711017|gb|EEU26060.1| DNA polymerase III [Enterococcus faecalis T8]
 gi|315030401|gb|EFT42333.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
           TX4000]
          Length = 586

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 50/294 (17%), Positives = 99/294 (33%), Gaps = 30/294 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           R +  ++  GQ      LK  I     + +     LF GP G GKT+ A++ A+ +    
Sbjct: 11  RSQRFDDVVGQKAITQTLKNAI----VQKKTSHAYLFTGPRGTGKTSAAKIFAKAINCKH 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P      +    +T     DV+ ID      +  +  I ++  Y   +      +
Sbjct: 67  SQDGEP--CNVCETCVAITEGRLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQAEYKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT    +   +  R            +D+
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRTQ-RFDFKRISTQDI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              +    +   L   ++A   I   + G  R A  +L +   F++            + 
Sbjct: 184 VDHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSILDQTISFSDEKV-------TLED 236

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           A+       + ++ +D      +A +      G+E+I     E R  +EDL+  
Sbjct: 237 AMQVTG--SLTYEMMDHYIQCCVAGDVERALEGLESILGEGKEARRFLEDLLLY 288


>gi|322392118|ref|ZP_08065580.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus peroris
           ATCC 700780]
 gi|321145018|gb|EFX40417.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus peroris
           ATCC 700780]
          Length = 554

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 48/273 (17%), Positives = 80/273 (29%), Gaps = 55/273 (20%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     R +   +  GQ      LK  +E      + + H  LF GP G GKT++A++ A
Sbjct: 4   ALYRKYRSQNFSQLVGQEVIARTLKQAVE-----QDKISHAYLFSGPRGTGKTSVAKIFA 58

Query: 76  RELGVNFRS------------------------TSGPVIAKAGDLAALLTN------LED 105
           + +    +                                   ++  +         +  
Sbjct: 59  KAMNCPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIRDIRDKSTYAPSIAQ 118

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
             V  IDE+H LS      L   +E+                         I ATT +  
Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPT------------------PNVVFILATTELHK 160

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           +   +  R       +    +    I     +  G+    EA   IA R+ G  R A  +
Sbjct: 161 IPATILSRVQRFEFKSIKTQDIRDHIF-YILEKEGIDYETEAVEIIARRAEGGMRDALSI 219

Query: 226 LRRVRDFAEVAHAKTITREIADAALLRLAIDKM 258
           L +     + A   T   E     +   A+D  
Sbjct: 220 LDQALSLTQEATLTTAVSEEITGTISLSALDNY 252


>gi|307262856|ref|ZP_07544480.1| DNA polymerase III subunits gamma and tau [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|306871761|gb|EFN03481.1| DNA polymerase III subunits gamma and tau [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 466

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 44/245 (17%), Positives = 77/245 (31%), Gaps = 55/245 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+   E  GQ    S L+  +   +     L H  LF G  G+GKT++A++ A+ L   
Sbjct: 11  RPQRFSEVVGQQHVLSALENGLREGR-----LHHAYLFSGTRGVGKTSIARLFAKGLNCE 65

Query: 82  F------------------------RSTSGPVIAKAGDLAALLTNLEDRD------VLFI 111
                                             K  D   LL N++ +       V  I
Sbjct: 66  TGITATPCGECANCKAIEEGRFIDLIEIDAASRTKVEDTRELLDNVQYKPTVGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSRHSFNALLKTLEE------------------PPEYVKFLLATTDPQKLPITIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L   +   +   ++   +   +     A  ++A  ++G+ R +  L  +   
Sbjct: 168 SRC-MQFHLRALDQAQIANHLEFILQQENIPYESVAIEKLAKAAQGSIRDSLSLTDQAIA 226

Query: 232 FAEVA 236
            +   
Sbjct: 227 VSNAN 231


>gi|269103102|ref|ZP_06155799.1| DNA polymerase III subunits gamma and tau [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268163000|gb|EEZ41496.1| DNA polymerase III subunits gamma and tau [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 698

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 55/266 (20%), Positives = 86/266 (32%), Gaps = 59/266 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP    +  GQ    + L+  +E        L H  LF G  G+GKTT+A++ A+ L   
Sbjct: 11  RPAQFADVVGQAHVLTALENALE-----HNRLHHAYLFSGTRGVGKTTIARIFAKGLNCE 65

Query: 82  ------------------------FRSTSGPVIAKAGDLAALLTNLEDRD------VLFI 111
                                             K  D   LL N++ +       V  I
Sbjct: 66  QGVTAHPCGQCATCKEIDEGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         I ATT    L   + 
Sbjct: 126 DEVHMLSRHSFNALLKTLEE------------------PPEYVKFILATTDPQKLPVTIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L   + + ++T +++      LA   +A   IA  + G+ R A  L     D
Sbjct: 168 SRC-LQFHLKHLDNQQIQTQLEKVLTEEQLAYDIKALSLIARAAEGSMRDALSL----TD 222

Query: 232 FAEVAHAKTITREIADAALLRLAIDK 257
            +       +  +   A L  L  D+
Sbjct: 223 QSIALGNGHVEADKVAAMLGTLDTDQ 248


>gi|307353811|ref|YP_003894862.1| AAA family ATPase [Methanoplanus petrolearius DSM 11571]
 gi|307157044|gb|ADN36424.1| AAA family ATPase, CDC48 subfamily [Methanoplanus petrolearius DSM
           11571]
          Length = 831

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 59/260 (22%), Positives = 83/260 (31%), Gaps = 34/260 (13%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARELG 79
           E+  G       ++  IE      E            VL  GPPG GKT +A+ VA E+ 
Sbjct: 182 EDIGGLGRELDQVREMIELPLRHPELFKKIGIQPPKGVLLYGPPGTGKTLIAKAVANEVD 241

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAMED 131
            NF + SGP I         G L  +    E+    ++FIDEI  ++   EE      + 
Sbjct: 242 ANFITLSGPEIMSKYYGESEGKLREVFEQAEENAPTIIFIDEIDSIAPKREETKGEVEQR 301

Query: 132 FQ---LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
                L LM G       + I        AAT     +   L+       R   ++ E  
Sbjct: 302 IVAQLLALMDGLKGRGEVIVI--------AATNLPDNIDPALR-------RGGRFDREIE 346

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             I  R  +L    V              T   +  L +   +  E    K         
Sbjct: 347 IGIPDRKGRLEIFQVHTRGVPLDLDEIVITTDESEELGKTFTELGEEEGKKYENEIKRRK 406

Query: 249 ALLRLAIDKMGFDQLDLRYL 268
            L   A    GF   D+  L
Sbjct: 407 FLEPFAARTHGFVGADISLL 426



 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 55/254 (21%), Positives = 87/254 (34%), Gaps = 26/254 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIE--------AAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           + E+  G  +    L   +E          + +      +L  GPPG GKT LA+ VA +
Sbjct: 486 SWEDIGGLEDVKEELMEAVEWPLKYPDIFTRLKTSPPSGILLFGPPGTGKTLLAKAVANK 545

Query: 78  LGVNFRSTSGPVI--AKAGDLAALLTNLEDR------DVLFIDEIHRLSIIV--EEILYP 127
             VNF S  GP +     G+    + N+  R       ++F DEI  L       E    
Sbjct: 546 SEVNFISVKGPELLSKWVGESEKGIRNIFRRARQAAPSIIFFDEIDALLPKRGSFEGSSH 605

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
             E     ++             L    ++ AT R  LL + L    R    I +   + 
Sbjct: 606 VTESVVSQILTELDGLEE-----LKNVIVLGATNRPDLLDDALMRPGRLDRAIYVPPPDA 660

Query: 186 EDLKTIVQRGAK-LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           E  K I +   K    +   D    E+  ++ G       +L R    A +      T  
Sbjct: 661 EARKKIFEVYLKDSESVISKDIDLDELVKKTEGYVGADIEMLVREAKLASMRDFILKTAG 720

Query: 245 IADAALLRLAIDKM 258
           ++D    R   + M
Sbjct: 721 MSDEDRERALSNVM 734


>gi|296113237|ref|YP_003627175.1| DNA polymerase III gamma and tau subunit [Moraxella catarrhalis
           RH4]
 gi|295920931|gb|ADG61282.1| DNA polymerase III gamma and tau subunit [Moraxella catarrhalis
           RH4]
          Length = 748

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 50/234 (21%), Positives = 80/234 (34%), Gaps = 23/234 (9%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQ 72
           Q        RP+   E  GQ      L   I+  +     L H  LF G  G+GKTT+A+
Sbjct: 4   QYQVLARKYRPKNFSELLGQSHVAQALSNAIDTGR-----LHHAYLFTGTRGVGKTTIAR 58

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL-----YP 127
           ++A+ L      TS P      D    +      D++ ID   R  +     L     YP
Sbjct: 59  ILAKCLNCETGMTSQP--CGVCDTCISIDQGRFLDLIEIDAASRTKVEDTRELLENVPYP 116

Query: 128 AMEDFQLDLMVGEGPS--ARSVKINLS-------RFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++      ++ E       S    L            + ATT    L   +  R  +  
Sbjct: 117 PVQGRYKVYLIDEVHMLSTHSFNALLKTLEEPPDYVKFVFATTDPQKLPITIISRC-LQF 175

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
            L       L   + +      +  T+ A  ++A  ++G+ R A  L  +   F
Sbjct: 176 VLRPLPQACLSDHLAKVLDAEKIPFTENALWQLASAAKGSVRDALSLTDQAIAF 229


>gi|242074030|ref|XP_002446951.1| hypothetical protein SORBIDRAFT_06g025740 [Sorghum bicolor]
 gi|241938134|gb|EES11279.1| hypothetical protein SORBIDRAFT_06g025740 [Sorghum bicolor]
          Length = 333

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 76/226 (33%), Gaps = 38/226 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP  + +  G  +A + L+V      AR   + +++  GPPG GKTT    +A 
Sbjct: 16  PWVEKYRPNRVADVVGNSDAVARLEVI-----ARDGNMPNLILSGPPGTGKTTSILALAH 70

Query: 77  ------------ELGVNFRSTSGPVIAKAGDLA--ALLTNLEDRDVLFIDEIHRLSIIVE 122
                       EL  +       V  K    A   +        ++ +DE   ++   +
Sbjct: 71  ELLGPSYREAVLELNASDDRGLDVVRNKIKMFAQKKVTLQPGRHKIVILDEADSMTTGAQ 130

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           + L   ME +                 N +RF L   T+    +  P+Q R  I      
Sbjct: 131 QALRRTMEIYS----------------NTTRFALACNTS--SKIIEPIQSRCAIVRFSRL 172

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            + E L  ++   A    +    E    I   + G  R A   L+ 
Sbjct: 173 SDQEILGRLMIVVAAE-KVPYVPEGLEAIIFTADGDMRQALNNLQA 217


>gi|62858553|ref|NP_001016363.1| replication factor C (activator 1) 4, 37kDa [Xenopus (Silurana)
           tropicalis]
 gi|89266993|emb|CAJ81288.1| replication factor C (activator 1) 4, 37kDa [Xenopus (Silurana)
           tropicalis]
 gi|134026004|gb|AAI35433.1| replication factor C (activator 1) 4, 37kDa [Xenopus (Silurana)
           tropicalis]
          Length = 360

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 45/264 (17%), Positives = 84/264 (31%), Gaps = 35/264 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+ ++E   Q E  + LK  +E A      L ++LF GPPG GKT+     +R
Sbjct: 38  PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGAD-----LPNLLFYGPPGTGKTSTILAASR 92

Query: 77  E------LGVNFRSTSGPVIAKAGDLAALLTNLEDRD---------------VLFIDEIH 115
           E              +         +   + N                    ++ +DE  
Sbjct: 93  ELYGPELFRQRVLELNASDERGIQVVREKVKNFAQLTVGGTRSDGKPCPPFKIVILDEAD 152

Query: 116 RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
            ++   +  L   ME         +      +   +SR      +        PL D+  
Sbjct: 153 SMTSAAQAALRRTMEKES------KTTRFCLICNYVSRIIEPLTSRCSKFRFKPLADKIQ 206

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
               L+  E E++K  +   A    + V++    +     +   R+ G          E+
Sbjct: 207 TQRLLSICEKENVK--ITNEAISCLVEVSEGDLRKAITFLQSATRLTGGKEITEEIVTEI 264

Query: 236 AH-AKTITREIADAALLRLAIDKM 258
           A      T +    A    + +K+
Sbjct: 265 AGVVPKETLDCVLVACQSGSFEKL 288


>gi|223933163|ref|ZP_03625155.1| DNA polymerase III, subunits gamma and tau [Streptococcus suis
           89/1591]
 gi|223898224|gb|EEF64593.1| DNA polymerase III, subunits gamma and tau [Streptococcus suis
           89/1591]
          Length = 555

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 51/275 (18%), Positives = 92/275 (33%), Gaps = 27/275 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     R +T  E  GQ    + LK  IE  K         LF GP G GKT+ A++ A+
Sbjct: 4   ALYRKYRSQTFGEMVGQEVVATTLKQAIEQGKISHAY----LFSGPRGTGKTSAAKIFAK 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHR---------LSIIVEEILYP 127
            +    +    P       +   +T     DV+ ID                        
Sbjct: 60  AMNCPNQVGGEPCNDCY--ICQAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLA 117

Query: 128 AMEDFQLDLMVGEGPSA-----RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             + + +D +      A     ++++        I ATT +  +   +  R         
Sbjct: 118 TYKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQ-RFEFKS 176

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            ++ D++  +       GL   ++A   IA R+ G  R A  +L +    ++        
Sbjct: 177 IKVTDIQEHLAAILTKEGLIFDEQALTIIARRAEGGMRDALSILDQALSLSQDQQVTLEI 236

Query: 243 REIADAALLRLAID------KMGFDQLDLRYLTMI 271
            E    ++   A+D      + G     L++L  +
Sbjct: 237 AEEITGSISLRALDDYVASLRQGDSVTALQHLQTL 271


>gi|224534150|ref|ZP_03674730.1| cell division protein FtsH [Borrelia spielmanii A14S]
 gi|224514575|gb|EEF84889.1| cell division protein FtsH [Borrelia spielmanii A14S]
          Length = 639

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 56/253 (22%), Positives = 94/253 (37%), Gaps = 31/253 (12%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ E    L+  +E  K         A+    VL VG PG GKT LA+ VA E 
Sbjct: 170 TFKDVAGQEEVKQELREVVEFLKNPKKFEKIGAKIPKGVLLVGSPGTGKTLLAKAVAGEA 229

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV+F   SG       V   A  +  L  N       ++FIDE+  +       L    +
Sbjct: 230 GVSFFHMSGSDFVEMFVGVGASRVRDLFDNARKNSPCIIFIDELDAVGRSRGAGLGGGHD 289

Query: 131 DFQLDL------MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNF 182
           + +  L      M G G     +        ++AAT R  +L + L    RF   + ++ 
Sbjct: 290 EREQTLNQLLVEMDGFGTHTNVI--------VMAATNRPDVLDSALLRPGRFDRQVTVSL 341

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            +I++ + I+   +  T L+               +      L+      A   +   I 
Sbjct: 342 PDIKEREAILNIHSSKTKLSKNINLQVIARATPGASGADLANLINEAALIAARNNQDEIL 401

Query: 243 REIADAALLRLAI 255
            +  + A  ++ +
Sbjct: 402 MKDMEEARDKILM 414


>gi|159487319|ref|XP_001701670.1| AAA-ATPase of VPS4/SKD1 family [Chlamydomonas reinhardtii]
 gi|158280889|gb|EDP06645.1| AAA-ATPase of VPS4/SKD1 family [Chlamydomonas reinhardtii]
          Length = 436

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 57/261 (21%), Positives = 92/261 (35%), Gaps = 25/261 (9%)

Query: 28  EEFTGQVEACSNLK-------VFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           ++  G   A   LK        F +    + +    +L  GPPG GK+ LA+ VA E   
Sbjct: 129 DDVAGLEGAKEALKEAVILPVKFPQFFTGKRKPWSGILLYGPPGTGKSYLAKAVATEADS 188

Query: 81  NFRSTSGP--VIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
            F S S    V    G+   L++ L          ++FIDE+  L     +    A    
Sbjct: 189 TFFSVSSQDLVSKWLGESEKLVSQLFVLARENAPSIIFIDEVDSLCSTRGDNESEAARRI 248

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           +  LM+       +     SR  ++ AT     L   ++ RF   I +   E      + 
Sbjct: 249 KTQLMIEINGVGSNN----SRVLVLGATNLPYNLDQAIRRRFDKRIYIPLPEEPARSQMF 304

Query: 193 QRGAKLTGLAVTDEAACEIAMR------SRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +     T   +TD+   E+  R      S     +   L++ +R   E  H K +     
Sbjct: 305 KIHLGDTPNNLTDDDYRELGRRTEGFSGSDINVVVKDVLMQPIRLLREATHFKKVRGPDG 364

Query: 247 DAALLRLAIDKMGFDQLDLRY 267
             A    +    G  +L L Y
Sbjct: 365 GEAWEPCSPGDPGAQELSLNY 385


>gi|29377253|ref|NP_816407.1| DNA polymerase III, gamma and tau subunits [Enterococcus faecalis
           V583]
 gi|227554263|ref|ZP_03984310.1| DNA polymerase III, gamma and tau subunits [Enterococcus faecalis
           HH22]
 gi|229549105|ref|ZP_04437830.1| DNA polymerase III, gamma and tau subunits [Enterococcus faecalis
           ATCC 29200]
 gi|255971824|ref|ZP_05422410.1| DNA-directed DNA polymerase III [Enterococcus faecalis T1]
 gi|256616720|ref|ZP_05473566.1| DNA-directed DNA polymerase III [Enterococcus faecalis ATCC 4200]
 gi|256763401|ref|ZP_05503981.1| DNA-directed DNA polymerase III [Enterococcus faecalis T3]
 gi|256958005|ref|ZP_05562176.1| DNA-directed DNA polymerase III [Enterococcus faecalis DS5]
 gi|257079943|ref|ZP_05574304.1| DNA-directed DNA polymerase III [Enterococcus faecalis JH1]
 gi|257087744|ref|ZP_05582105.1| DNA-directed DNA polymerase III [Enterococcus faecalis D6]
 gi|257091016|ref|ZP_05585377.1| DNA polymerase III gamma and tau subunits [Enterococcus faecalis
           CH188]
 gi|294779698|ref|ZP_06745086.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
           PC1.1]
 gi|300861270|ref|ZP_07107357.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
           TUSoD Ef11]
 gi|307269190|ref|ZP_07550545.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
           TX4248]
 gi|307277017|ref|ZP_07558126.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
           TX2134]
 gi|307288600|ref|ZP_07568582.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
           TX0109]
 gi|307290217|ref|ZP_07570133.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
           TX0411]
 gi|312900139|ref|ZP_07759455.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
           TX0470]
 gi|312902602|ref|ZP_07761808.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
           TX0635]
 gi|29344719|gb|AAO82477.1| DNA polymerase III, gamma and tau subunits [Enterococcus faecalis
           V583]
 gi|227176623|gb|EEI57595.1| DNA polymerase III, gamma and tau subunits [Enterococcus faecalis
           HH22]
 gi|229305730|gb|EEN71726.1| DNA polymerase III, gamma and tau subunits [Enterococcus faecalis
           ATCC 29200]
 gi|255962842|gb|EET95318.1| DNA-directed DNA polymerase III [Enterococcus faecalis T1]
 gi|256596247|gb|EEU15423.1| DNA-directed DNA polymerase III [Enterococcus faecalis ATCC 4200]
 gi|256684652|gb|EEU24347.1| DNA-directed DNA polymerase III [Enterococcus faecalis T3]
 gi|256948501|gb|EEU65133.1| DNA-directed DNA polymerase III [Enterococcus faecalis DS5]
 gi|256987973|gb|EEU75275.1| DNA-directed DNA polymerase III [Enterococcus faecalis JH1]
 gi|256995774|gb|EEU83076.1| DNA-directed DNA polymerase III [Enterococcus faecalis D6]
 gi|256999828|gb|EEU86348.1| DNA polymerase III gamma and tau subunits [Enterococcus faecalis
           CH188]
 gi|294453189|gb|EFG21603.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
           PC1.1]
 gi|300850309|gb|EFK78059.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
           TUSoD Ef11]
 gi|306498638|gb|EFM68139.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
           TX0411]
 gi|306500435|gb|EFM69770.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
           TX0109]
 gi|306506312|gb|EFM75473.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
           TX2134]
 gi|306514482|gb|EFM83042.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
           TX4248]
 gi|310634272|gb|EFQ17555.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
           TX0635]
 gi|311292774|gb|EFQ71330.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
           TX0470]
 gi|315025455|gb|EFT37387.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
           TX2137]
 gi|315032629|gb|EFT44561.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
           TX0017]
 gi|315035150|gb|EFT47082.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
           TX0027]
 gi|315143828|gb|EFT87844.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
           TX2141]
 gi|315154258|gb|EFT98274.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
           TX0031]
 gi|315159651|gb|EFU03668.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
           TX0312]
 gi|315162057|gb|EFU06074.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
           TX0645]
 gi|315165347|gb|EFU09364.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
           TX1302]
 gi|315573755|gb|EFU85946.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
           TX0309B]
 gi|315579587|gb|EFU91778.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
           TX0630]
 gi|315580330|gb|EFU92521.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
           TX0309A]
 gi|323481702|gb|ADX81141.1| DNA polymerase III, subunits gamma and tau [Enterococcus faecalis
           62]
 gi|327535993|gb|AEA94827.1| DNA polymerase III, gamma/tau subunit DnaX [Enterococcus faecalis
           OG1RF]
 gi|329572917|gb|EGG54538.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
           TX1467]
          Length = 586

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 50/294 (17%), Positives = 99/294 (33%), Gaps = 30/294 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           R +  ++  GQ      LK  I     + +     LF GP G GKT+ A++ A+ +    
Sbjct: 11  RSQRFDDVVGQKAITQTLKNAI----VQKKTSHAYLFTGPRGTGKTSAAKIFAKAINCKH 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P      +    +T     DV+ ID      +  +  I ++  Y   +      +
Sbjct: 67  SQDGEP--CNVCETCVAITEGRLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQAEYKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT    +   +  R            +D+
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRTQ-RFDFKRISTQDI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              +    +   L   ++A   I   + G  R A  +L +   F++            + 
Sbjct: 184 VDHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSILDQTISFSDEKV-------TLED 236

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           A+       + ++ +D      +A +      G+E+I     E R  +EDL+  
Sbjct: 237 AMQVTG--SLTYEMMDHYIQCCVAGDVERALEGLESILGEGKEARRFLEDLLLY 288


>gi|229523159|ref|ZP_04412566.1| DNA polymerase III subunits gamma and tau [Vibrio cholerae TM
           11079-80]
 gi|229339522|gb|EEO04537.1| DNA polymerase III subunits gamma and tau [Vibrio cholerae TM
           11079-80]
          Length = 692

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 52/265 (19%), Positives = 82/265 (30%), Gaps = 57/265 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP    E  GQ    + L    E A A+       LF G  G+GKTT+ ++ A+ L    
Sbjct: 11  RPTRFSEVVGQSHVLTAL----ENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCET 66

Query: 83  ------------------------RSTSGPVIAKAGDLAALLTNLEDRD------VLFID 112
                                            K  D   LL N++ +       V  ID
Sbjct: 67  GITATPCGQCATCQEIDQGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRFKVYLID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS      L   +E+                         + ATT    L   +  
Sbjct: 127 EVHMLSRHSFNALLKTLEE------------------PPEYVKFLLATTDPQKLPVTILS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R  +   L    +E+++  + +      ++   +A   +A  + G+ R A  L     D 
Sbjct: 169 RC-LQFHLKPISVENIQQQLDKVLHAEQISSDSKALNLLAHAADGSMRDALSL----TDQ 223

Query: 233 AEVAHAKTITREIADAALLRLAIDK 257
           A       +  +I    L  L  D 
Sbjct: 224 AIALGNGVVKSDIVAHMLGTLDTDH 248


>gi|150388893|ref|YP_001318942.1| sporulation protease LonB [Alkaliphilus metalliredigens QYMF]
 gi|149948755|gb|ABR47283.1| Sporulation protease LonB [Alkaliphilus metalliredigens QYMF]
          Length = 564

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 47/214 (21%), Positives = 69/214 (32%), Gaps = 56/214 (26%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP + E+  GQ      L+     A   +    HV+  GPPG+GKT  A+V+  E     
Sbjct: 62  RPSSFEDIVGQENGLKALR-----ATLCSPNPQHVIIYGPPGVGKTAAARVMLEEARKYK 116

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDV---------------------------------- 108
            S      +K  ++ A     +DR +                                  
Sbjct: 117 SSPFNQE-SKFIEMDATTLRFDDRGIADPLMGSVHDPIYQGAGQLGQAGIPQPKPGAVTK 175

Query: 109 -----LFIDEIHRLSIIVEEILYPAMEDFQLDL------MVGEGPSARSVKI----NLSR 153
                LF+DEI  L  +    L   +ED ++ L         E        I      + 
Sbjct: 176 AHGGMLFLDEIGELHPVQMNKLLKVLEDRKVFLESAYYSAEDENVPPYIHDIFQNGLPAD 235

Query: 154 FTLIAATTR-VGLLTNPLQDRFGIPIRLNFYEIE 186
           F L+ ATTR    L   L+ R         Y+ E
Sbjct: 236 FRLVGATTRMAQDLPPALRSRCVEVYFRPLYKEE 269


>gi|90407634|ref|ZP_01215814.1| DNA polymerase III subunits gamma and tau [Psychromonas sp. CNPT3]
 gi|90311225|gb|EAS39330.1| DNA polymerase III subunits gamma and tau [Psychromonas sp. CNPT3]
          Length = 784

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 43/240 (17%), Positives = 70/240 (29%), Gaps = 53/240 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN- 81
           RP    E  GQ    + L         +       LF G  G+GKT++A+++A+ L    
Sbjct: 11  RPHNFSEVIGQEHVLTALS----NGLTQNRVHHAYLFSGTRGVGKTSIARILAKSLNCEQ 66

Query: 82  -----------------------FRSTSGPVIAKAGDLAALLTNLEDRD------VLFID 112
                                            K  D   +L N++ +       V  ID
Sbjct: 67  GVTATPCGQCEFCLAIDAGHFVDLLEIDAASRTKVDDTREMLDNVQYKPTVGRYKVYLID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS      L   +E+                         + ATT    L   +  
Sbjct: 127 EVHMLSKHSFNALLKTLEE------------------PPEYVKFLLATTDPQKLPITVLS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R  +   L     E ++  ++             +   IA  + G+ R A  L  +   F
Sbjct: 169 RC-LQFHLKALLPEQIEKQLRYILDQEQATFDGASLTAIANAADGSMRDALSLTDQALAF 227


>gi|322412086|gb|EFY02994.1| DNA polymerase III subunits gamma and tau [Streptococcus
           dysgalactiae subsp. dysgalactiae ATCC 27957]
          Length = 559

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 53/259 (20%), Positives = 91/259 (35%), Gaps = 27/259 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     R +T +E  GQ    + LK  +E+ K         LF GP G GKT+ A++ A+
Sbjct: 4   ALYRKYRSQTFDEMVGQSVISTTLKQAVESGKISHAY----LFSGPRGTGKTSAAKIFAK 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +    +    P      D+   +TN    DV+ ID      +  +  I ++  Y     
Sbjct: 60  AMNCPNQVNGEPCNQC--DICRDITNGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSRA 117

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQD---RFGIPIR 179
                ++ E             ++++        I ATT +  +   +     RF     
Sbjct: 118 TYKVYIIDEIHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAI 177

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
                 E L +I+       GL    +A   IA R+ G  R A  +L +    +      
Sbjct: 178 KQKAIREHLASIL----DKEGLTYEVDALNLIARRAEGGMRDALSILDQALSLSPDDQVT 233

Query: 240 TITREIADAALLRLAIDKM 258
               E    ++  +A+D  
Sbjct: 234 MAIAEEITGSISMVALDDY 252


>gi|296192221|ref|XP_002743970.1| PREDICTED: replication factor C subunit 2 isoform 1 [Callithrix
           jacchus]
          Length = 352

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 78/227 (34%), Gaps = 38/227 (16%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   +   RP  L E  G  +  S L+VF     AR   + +++  GPPG GKTT    +
Sbjct: 33  ELPWVEKYRPVKLNEIVGNEDTVSRLEVF-----AREGNVPNIIIAGPPGTGKTTSILCL 87

Query: 75  AR------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIHRLSII 120
           AR            EL  +       V  K    A     L      ++ +DE   ++  
Sbjct: 88  ARALLGPALKDAVLELNASNDRGIDVVRNKVKMFAQHKVTLPKGRHKIIILDEADSMTDG 147

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            ++ L   ME +                   +RF    A      +  P+Q R  +    
Sbjct: 148 AQQALRRTMEIYSKT----------------TRF--ALACNASDKIIEPIQSRCAVLRYT 189

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
              + + L  ++    +   +  TD+    I   ++G  R A   L+
Sbjct: 190 KLTDAQILTRLMS-VIEKERVPHTDDGLEAIIFTAQGDMRQALNNLQ 235


>gi|195028710|ref|XP_001987219.1| GH20092 [Drosophila grimshawi]
 gi|193903219|gb|EDW02086.1| GH20092 [Drosophila grimshawi]
          Length = 754

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 59/271 (21%), Positives = 99/271 (36%), Gaps = 24/271 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  EA   LK  +E  K+         +    VL VGPPG GKT LA+ VA E 
Sbjct: 317 TFDDVKGCDEAKQELKEVVEFLKSPDKFSNLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 376

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F   +GP          A  +  L    + R   V+FIDEI  +       +     
Sbjct: 377 NVPFFHAAGPEFDEVLVGQGARRVRDLFKAAKARAPCVIFIDEIDSVGAKRTNSVLHPYA 436

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
           +  ++ ++ E               ++ AT R   L   L    RF + + ++  +    
Sbjct: 437 NQTINQLLSEMDGFHQNAG----VIVLGATNRRDDLDQALLRPGRFDVEVVVSTPDFTGR 492

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAM-RSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           K I+     L  +   D     +A   S  T      ++ +    A +  A+T++ +  +
Sbjct: 493 KEIL--SLYLEKILHDDVDLDLLARGTSGFTGADLENMINQAALRAAIDGAETVSMKHLE 550

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
            A  ++ +      +L       I     GG
Sbjct: 551 TARDKVLMGPERKARLPDEEANTITAYHEGG 581


>gi|118586636|ref|ZP_01544076.1| DNA-dependent DNA polymerase III, gamma/tau subunits [Oenococcus
           oeni ATCC BAA-1163]
 gi|118432951|gb|EAV39677.1| DNA-dependent DNA polymerase III, gamma/tau subunits [Oenococcus
           oeni ATCC BAA-1163]
          Length = 608

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 76/225 (33%), Gaps = 40/225 (17%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE----L 78
           RPRT  +  GQ      L+  +++ K         LF GP G GKT++A++ ARE     
Sbjct: 24  RPRTFSDLVGQTVIAQTLENALKSNKVGHAY----LFAGPRGTGKTSVAKIFAREIEGIP 79

Query: 79  GVNFRSTSGPVIA-------KAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEIL 125
               R +   +I           ++  L              +  IDE+H LS      L
Sbjct: 80  DDTDRESFSDIIEIDAASNNGVDEIRNLRDAANYAPIEYQFKIYIIDEVHMLSTGAFNAL 139

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
              +E+                    ++   I ATT    +   +  R       +  ++
Sbjct: 140 LKTIEE------------------PPAQVKFILATTEPQKIPATILSRVQ-RFDFHRIDV 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
           + +   ++       +A    A   +A  S G  R A  +L +  
Sbjct: 181 DQIVKRLEFVLDDQKIAYDPAALKIVANASDGGLRDALSILDQAV 225


>gi|72382193|ref|YP_291548.1| peptidase M41, FtsH [Prochlorococcus marinus str. NATL2A]
 gi|72002043|gb|AAZ57845.1| membrane protease FtsH catalytic subunit [Prochlorococcus marinus
           str. NATL2A]
          Length = 575

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 65/308 (21%), Positives = 113/308 (36%), Gaps = 33/308 (10%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLK---VFIEAAKARAE----ALDHVLFVG 61
           S  V+++D     +R  T ++  G  +    LK   +F++  +   +        VL VG
Sbjct: 110 SSQVNEDD-----IRKYTFDDVAGLNQESDELKEIVIFLKNPQTLKDLGAKTPKGVLLVG 164

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDE 113
           PPG GKT LA+ +A E  V F S S            AG +  L  + + +   ++FIDE
Sbjct: 165 PPGTGKTLLARSIAGEADVPFFSISASEFVEMFVGVGAGRVRDLFKSAKSKAPCIVFIDE 224

Query: 114 IHRLSIIVEEILYPAMEDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           I  +       +    ++ +  L  ++ E     +         +IAAT R  +L   L 
Sbjct: 225 IDSIGRQRGAGIGGGNDEREQTLNQLLTEMDGFEANNG----VIVIAATNRPDILDRALT 280

Query: 172 D--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
              RF   I ++  + E    I+   A+   L  +             +      L+   
Sbjct: 281 RPGRFDRRIDISLPDREARHKILSVHARTKPLCDSVNLKDWATKTPGYSGADLQNLMNEA 340

Query: 230 RDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGL 289
             +A   +   I+    + AL +     +     D      IA    G     +T+ A L
Sbjct: 341 AIYAARNNKSVISSVELENALEKTRFGILSKPLSDQTKKRQIAYQIIG-----KTLVALL 395

Query: 290 SEPRDAIE 297
              +D +E
Sbjct: 396 IPTQDKLE 403


>gi|84495160|ref|ZP_00994279.1| DNA polymerase III subunits gamma and tau [Janibacter sp. HTCC2649]
 gi|84384653|gb|EAQ00533.1| DNA polymerase III subunits gamma and tau [Janibacter sp. HTCC2649]
          Length = 799

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 58/175 (33%), Gaps = 26/175 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T  +  GQ      L   +   +         LF GP G GKTT A+++AR
Sbjct: 7   ALYRRYRPETFVDVIGQEHVTEPLMQALRTGRVNHAY----LFSGPRGCGKTTSARILAR 62

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR----DVLFIDEIHRLSIIVEEILY------ 126
            L        GP     G+  + +          DV+ ID      +     L       
Sbjct: 63  CLNCE----QGPTPTPCGECDSCVALARGGAGTVDVIEIDAASHGGVDDARDLRERASYG 118

Query: 127 PAMEDFQLDLMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           PA   +++ ++         G     + V+        I ATT    +   ++ R
Sbjct: 119 PAQSRYKIYIIDEAHMVTPQGFNALLKIVEEPPEHVKFIFATTEPEKVIGTIRSR 173


>gi|82540400|ref|XP_724521.1| replication factor C3 [Plasmodium yoelii yoelii str. 17XNL]
 gi|23479189|gb|EAA16086.1| replication factor C3 [Plasmodium yoelii yoelii]
          Length = 344

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 75/215 (34%), Gaps = 11/215 (5%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP  L +     +  S ++ F+E  +     L H+L  GPPG GKT+    V +
Sbjct: 14  PWVEKYRPGVLNDIISHEQVISTIRKFVEKGE-----LPHLLLHGPPGTGKTSTILAVCK 68

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           EL    RS+    +  + D    +   + +   F +  +  + I E      +   + D 
Sbjct: 69  ELYGESRSSFVLELNASDDRGITVVREQIKT--FAESKNHYN-ICERTSLKLIILDEADH 125

Query: 137 MV--GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           M    +    R ++              V  +T  +Q R     R +  + E +      
Sbjct: 126 MTFPAQNAMRRIMENYAKNVRFCLICNYVNKITPAIQSRC-TSFRFSPLKEEYMLNKALD 184

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
            AK   + +T      +    RG  R     L+ V
Sbjct: 185 IAKSENVNLTKNGVESLIRVGRGDMRRILNCLQVV 219


>gi|254578476|ref|XP_002495224.1| ZYRO0B06248p [Zygosaccharomyces rouxii]
 gi|238938114|emb|CAR26291.1| ZYRO0B06248p [Zygosaccharomyces rouxii]
          Length = 321

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 42/242 (17%), Positives = 79/242 (32%), Gaps = 39/242 (16%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   +   RP+ L +  G  E    L+       A+   + H++  G PG+GKTT    +
Sbjct: 9   ELPWVEKYRPKQLSDTVGNEETIHRLQQI-----AKDGNMPHLIISGLPGIGKTTSIHCL 63

Query: 75  ARE-----LGVNFRSTSGPVIAKAGDLAALLTNLEDR---------DVLFIDEIHRLSII 120
           A E             +         +   +     +          ++ +DE   ++  
Sbjct: 64  AHELLGDSYSQGVLELNASDDRGIDVVRNQIKQFAQKKCHLEPGKHKIIILDEADSMTAG 123

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            ++ L   ME +                 N +RF    A  +   +  PLQ R  I    
Sbjct: 124 AQQALRRTMELYS----------------NTTRFAF--ACNQSNKIIEPLQSRCAILRYS 165

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA-GRLLRRVRDFAEVAHAK 239
              + + LK +++   K   +  T++    +   + G  R A   L   V   + V+   
Sbjct: 166 KLSDEQVLKRLLE-IIKAENVQYTNDGLEALIFTAEGDMRQAVNNLQSTVAGHSLVSGEN 224

Query: 240 TI 241
             
Sbjct: 225 VF 226


>gi|170030843|ref|XP_001843297.1| replication factor C subunit 4 [Culex quinquefasciatus]
 gi|167868416|gb|EDS31799.1| replication factor C subunit 4 [Culex quinquefasciatus]
          Length = 355

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 74/231 (32%), Gaps = 44/231 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+ +++   Q E  + L+  +  A      L ++L  GPPG GKT+     AR
Sbjct: 31  PWVEKYRPKNVDDVVEQGEVVAVLRESLSTAD-----LPNLLLYGPPGTGKTSTILAAAR 85

Query: 77  ------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD--------VLFIDEIHR 116
                       EL  +       +  K    A L  +    D        ++ +DE   
Sbjct: 86  QLFGDMFKERILELNASDDRGIAVIRNKVKTFAQLAASGTRPDGKPCPPFKIVILDEADA 145

Query: 117 LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
           ++   +  L   ME                     +RF        V  +  P+  R   
Sbjct: 146 MTHAAQAALRRTMEKETKT----------------TRF--CLVCNYVSRIIEPITSRC-T 186

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             R      E +   ++       + V D+A  +I   S G  R A   L+
Sbjct: 187 KFRFKPLRQEKIIERLRFICDQETVEVEDQAYQDIVDISGGDLRRAITTLQ 237


>gi|152973871|ref|YP_001373388.1| DNA polymerase III subunits gamma and tau [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152022623|gb|ABS20393.1| DNA polymerase III, subunits gamma and tau [Bacillus cytotoxicus
           NVH 391-98]
          Length = 562

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 82/228 (35%), Gaps = 25/228 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+   +  GQ      L    + A  + +A    LF GP G GKTT+A+V A+ +    
Sbjct: 11  RPQKFADVVGQKHVTKTL----QNALLQEKASHAYLFSGPRGTGKTTIAKVFAKAINCEH 66

Query: 83  RSTSGPVIAKAGDLAALL--TNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLD 135
                PV     +  A L  T     DVL ID      +  +  I +++ Y         
Sbjct: 67  ----APVAEPCNECPACLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVKYKV 122

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             ++++        I ATT    +   +  R           + 
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPQHVIFILATTEPHKIPPTIISRCQ-RFEFRKISVH 181

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
           D+   ++      G  V +EA   +A  + G  R A  ++ +   +++
Sbjct: 182 DIVERLETVVTNEGTKVENEALQIVARAAEGGMRDALSIIDQAISYSD 229


>gi|299144510|ref|ZP_07037589.1| DNA polymerase III, gamma and tau subunits [Peptoniphilus sp. oral
           taxon 386 str. F0131]
 gi|298517598|gb|EFI41338.1| DNA polymerase III, gamma and tau subunits [Peptoniphilus sp. oral
           taxon 386 str. F0131]
          Length = 548

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 80/234 (34%), Gaps = 25/234 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     R +T +E  GQ    + LK  I    A  E     LF G  G GKT+ A++ AR
Sbjct: 4   ALYRKYRSKTFDELVGQNHITTALKNQI----ANNEISHAYLFSGTRGTGKTSAAKIFAR 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHR-----LSIIVEEILYPAM 129
            +         P           L+ L+DR  DV+ +D         +  + E+++YP  
Sbjct: 60  AVNCLCSENGNP----CNHCENCLSILDDRVMDVIEMDAASNNSVDDIRELKEKVVYPPQ 115

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                  ++ E             + ++        I ATT    +   +  R       
Sbjct: 116 NLKYKVYIIDEVHMLSKSAFNALLKVLEEPPKHLIFILATTEPEKIPQTILSRTQ-RFNF 174

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
                E +   ++    L   +  ++    I+  S G  R A  LL +   F +
Sbjct: 175 KRINPEIIIENLKNITALENKSCDEDVFSLISNNSDGAMRDALSLLDQCLSFTD 228


>gi|70951019|ref|XP_744784.1| replication factor C, subunit 2 [Plasmodium chabaudi chabaudi]
 gi|56524878|emb|CAH75042.1| replication factor C, subunit 2, putative [Plasmodium chabaudi
           chabaudi]
          Length = 330

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 45/218 (20%), Positives = 90/218 (41%), Gaps = 14/218 (6%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+ L++   Q  A S LK  I+      + + H++F GPPG GKT+    +A 
Sbjct: 5   PWVEKYRPKKLDDIVHQTNAISMLKEVIK-----TKNMPHLIFHGPPGTGKTSAINALAH 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAAL---LTNLEDRDVLFIDEIHRLSIIVEEILYPA--MED 131
           EL      +   +   A D   +      ++    + I + ++++    E L P   +  
Sbjct: 60  ELFGKENISERVLELNASDDRGITVVREKIKAYTRISISK-NKINNETNEPLPPWKLVVL 118

Query: 132 FQLDLMVGEGPSA--RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
            + D+M  +  SA  R ++I  +    I     +  +++P+  R     R     +   K
Sbjct: 119 DEADMMTEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIYSRCS-CYRFQGIPLNIKK 177

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             +        + ++D+A  +I   ++G  R A  +L+
Sbjct: 178 EKLLYICNNENINISDDALTKIIETTQGDLRRAVSVLQ 215


>gi|288817749|ref|YP_003432096.1| DNA polymerase III gamma/tau subunit [Hydrogenobacter thermophilus
           TK-6]
 gi|288787148|dbj|BAI68895.1| DNA polymerase III gamma/tau subunit [Hydrogenobacter thermophilus
           TK-6]
 gi|308751348|gb|ADO44831.1| DNA polymerase III, subunits gamma and tau [Hydrogenobacter
           thermophilus TK-6]
          Length = 483

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 44/258 (17%), Positives = 82/258 (31%), Gaps = 54/258 (20%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+  ++  GQ       ++ + A + +  +    +F G  G GKTT+A+++ + L
Sbjct: 6   ARKYRPKFFKDVVGQEPVK---RILLNAVRLQKVS-SAYIFAGSRGTGKTTVARLLTKSL 61

Query: 79  GVNFRSTSG-------------------------PVIAKAGDLAALLTNL------EDRD 107
                  SG                                D+ A+   +          
Sbjct: 62  NCINLQESGEPCGQCENCLSIDRGSFPDLIEIDAASSRGIDDIRAIRDAVSYTPIKGRYK 121

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           V  +DE H L+      L   +E+                     R   I  TT    + 
Sbjct: 122 VYILDEAHMLTKEAFNALLKTLEE------------------PPPRTVFILCTTEYEKII 163

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             +  R    I       E++   ++   +   ++  +++   IA  S G  R A  LL 
Sbjct: 164 PTILSRCQRLIFTKL-SQEEIVQRLKHICQEENISYDEKSLITIAKLSDGGMRDAVSLLD 222

Query: 228 RVRDFAEVAHAKTITREI 245
           +V  +AE    + +  E 
Sbjct: 223 QVSTYAEGNIKEGVLEEF 240


>gi|229515436|ref|ZP_04404895.1| DNA polymerase III subunits gamma and tau [Vibrio cholerae TMA 21]
 gi|229347205|gb|EEO12165.1| DNA polymerase III subunits gamma and tau [Vibrio cholerae TMA 21]
          Length = 692

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 52/265 (19%), Positives = 82/265 (30%), Gaps = 57/265 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP    E  GQ    + L    E A A+       LF G  G+GKTT+ ++ A+ L    
Sbjct: 11  RPTRFSEVVGQSHVLTAL----ENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCET 66

Query: 83  ------------------------RSTSGPVIAKAGDLAALLTNLEDRD------VLFID 112
                                            K  D   LL N++ +       V  ID
Sbjct: 67  GITATPCGQCATCQEIDQGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRFKVYLID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS      L   +E+                         + ATT    L   +  
Sbjct: 127 EVHMLSRHSFNALLKTLEE------------------PPEYVKFLLATTDPQKLPVTILS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R  +   L    +E+++  + +      ++   +A   +A  + G+ R A  L     D 
Sbjct: 169 RC-LQFHLKPISVENIQQQLDKVLHAEQISSDSKALNLLAHAADGSMRDALSL----TDQ 223

Query: 233 AEVAHAKTITREIADAALLRLAIDK 257
           A       +  +I    L  L  D 
Sbjct: 224 AIALGNGVVKSDIVAHMLGTLDTDH 248


>gi|125717830|ref|YP_001034963.1| DNA polymerase III subunits gamma and tau [Streptococcus sanguinis
           SK36]
 gi|125497747|gb|ABN44413.1| DNA-directed DNA polymerase III chain, putative [Streptococcus
           sanguinis SK36]
 gi|325687936|gb|EGD29956.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
           SK72]
          Length = 556

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 47/270 (17%), Positives = 80/270 (29%), Gaps = 53/270 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     R +T  +  GQ    + L+  +E  K         LF GP G GKT++A++ A+
Sbjct: 4   ALYRKYRSQTFGQLVGQQVVATTLRQAVEQGKISHAY----LFSGPRGTGKTSVAKIFAK 59

Query: 77  ELGVNFR------------------------STSGPVIAKAGDLAALLTN------LEDR 106
            +    +                                   ++  +         L   
Sbjct: 60  AMNCPNQKDGEPCNDCYICQAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLAKH 119

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
            V  IDE+H LS      L   +E+                         I ATT +  +
Sbjct: 120 KVYIIDEVHMLSTGAFNALLKTLEEPT------------------ENVVFILATTELHKI 161

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
              +  R       +    + +  I +      G+    E    IA R+ G  R A  +L
Sbjct: 162 PATILSRVQRFEFKSIKTQDIIGHI-EWILDQEGIDFEQEGVQIIARRAEGGMRDALSIL 220

Query: 227 RRVRDFAEVAHAKTITREIADAALLRLAID 256
            +     +     T   E    ++   A+D
Sbjct: 221 DQALSLTQENRLTTDIAEEITGSISLGALD 250


>gi|294791167|ref|ZP_06756324.1| DNA polymerase III, gamma and tau subunits [Scardovia inopinata
           F0304]
 gi|294457638|gb|EFG25992.1| DNA polymerase III, gamma and tau subunits [Scardovia inopinata
           F0304]
          Length = 771

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 57/283 (20%), Positives = 95/283 (33%), Gaps = 30/283 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     RP T +   GQ +    L+  ++  K     L H  LF GP G GKT+ A+++A
Sbjct: 4   ALYRRYRPDTFDGVVGQDQVTVPLQRALDEGK-----LTHAYLFSGPRGCGKTSSARILA 58

Query: 76  RELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------P 127
           R +      TS P  V     DLA         DV+ ID      +     L       P
Sbjct: 59  RCVNCAQGPTSHPCGVCESCKDLA--TNGPGSIDVVEIDAASHNGVDDARELRERAGFAP 116

Query: 128 AMEDFQLDLMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           A + +++ ++         G     + V+        I ATT    +   ++ R      
Sbjct: 117 ARDRYKIFILDEAHMVTQQGFNALLKIVEEPPDHVMFIFATTEPEKVIGTIRSR-THHYP 175

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV----RDFAEV 235
                 E +   ++   +  G+               G+ R    +L ++     D    
Sbjct: 176 FRLVPPEIMGPYLEDICQKEGIKADPGVLKLTMRSGDGSVRDTLSVLDQLMAGSVDNRID 235

Query: 236 AHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
             +          AL+  AID +  D+   +    I +   GG
Sbjct: 236 YQSAVALLGYTPDALISDAIDAV-IDRDGAKLYADIEKVIIGG 277


>gi|170739791|ref|YP_001768446.1| DNA-directed DNA polymerase [Methylobacterium sp. 4-46]
 gi|168194065|gb|ACA16012.1| DNA-directed DNA polymerase [Methylobacterium sp. 4-46]
          Length = 699

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 53/277 (19%), Positives = 89/277 (32%), Gaps = 60/277 (21%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
            +  +        RPR   +  GQ  A +  K      + R   +  +L  GP G GKTT
Sbjct: 2   PDTQEPKGWDEKYRPRVFGDLVGQDGAVAWCKE-----RVRERQVKTLLLHGPSGCGKTT 56

Query: 70  LAQVVARELGVNFRSTSGPVIA------------------------KAGDLAALLT---- 101
           +A+V+   L         P ++                           D   L+     
Sbjct: 57  IARVLGNALNCRAPVDGSPCLSCDICREFKPKNDTYYREHLCASQGGLEDARMLVRASSA 116

Query: 102 --NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA 159
             + + R +  +DE HR++    + L   +E+               +  +L        
Sbjct: 117 SGSRKYRKIFALDEAHRMTGAAFDALLSRLEEPN------STTVFMLLTTDLEAIPEAVL 170

Query: 160 TTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTP 219
           T  + +   P+ D             ED  T + +  +  GL     A   +    RG+P
Sbjct: 171 TRSLRIEIRPISD-------------EDALTYLNKICRHEGLEPEAAALQLLVETGRGSP 217

Query: 220 RIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAID 256
           R   R L RV+DF       ++T +    AL     D
Sbjct: 218 RRLIRDLERVKDF------GSLTYDGVRRALDLDHAD 248


>gi|6016719|gb|AAF01545.1|AC009325_15 putative cell division control protein [Arabidopsis thaliana]
          Length = 703

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 62/268 (23%), Positives = 95/268 (35%), Gaps = 35/268 (13%)

Query: 26  TLEEFTGQVEACSNLKVFI-------EAAKARAEALDH-VLFVGPPGLGKTTLAQVVARE 77
           T ++F G  +    L++ +       E  K         +LF GPPG GKT LA  +A E
Sbjct: 114 TFKDFGGIKKILDELEMNVLFPILNPEPFKKIGVKPPSGILFHGPPGCGKTKLANAIANE 173

Query: 78  LGVNFRSTSG-PVIAKAG-----DLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM 129
            GV F   S   VI+        ++  L +        ++FIDEI  +    E       
Sbjct: 174 AGVPFYKISATEVISGVSGASEENIRELFSKAYRTAPSIVFIDEIDAIGSKRENQQREME 233

Query: 130 EDFQLDLMV-GEGPSARSVKI----NLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNF 182
           +     L+   +GP  +  K     +     +I AT R   L   L+   RF   I L  
Sbjct: 234 KRIVTQLLTCMDGPGNKGDKNAPDSSAGFVLVIGATNRPDALDPALRRSGRFETEIALTA 293

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            + +    I+   A+   L        +    +R TP   G  L  V   A         
Sbjct: 294 PDEDARAEILSVVAQKLRLE----GPFDKKRIARLTPGFVGADLESVAYLA--------G 341

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTM 270
           R+     L     ++ G  + D  +L M
Sbjct: 342 RKAIKRILDSRKSEQSGDGEDDKSWLRM 369


>gi|73957665|ref|XP_546916.2| PREDICTED: similar to replication factor C 2 (40kD) isoform 1
           [Canis familiaris]
          Length = 352

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 76/224 (33%), Gaps = 38/224 (16%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   +   RP  L E  G  +  S L+VF     A+   + +++  GPPG GKTT    +
Sbjct: 33  ELPWVEKYRPVKLNEIVGNEDTVSRLEVF-----AKEGNVPNIIIAGPPGTGKTTSILCL 87

Query: 75  AR------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIHRLSII 120
           AR            EL  +       V  K    A     L      ++ +DE   ++  
Sbjct: 88  ARALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDG 147

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            ++ L   ME +                   +RF    A      +  P+Q R  +    
Sbjct: 148 AQQALRRTMEIYSKT----------------TRF--ALACNASDKIIEPIQSRCAVLRYT 189

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGR 224
              + + L  ++    +   +  TD+    +   ++G  R A  
Sbjct: 190 KLSDAQVLARLLT-VLEQEKVPYTDDGLEAVIFTAQGDMRQALN 232


>gi|119500238|ref|XP_001266876.1| intermembrane space AAA protease IAP-1 [Neosartorya fischeri NRRL
           181]
 gi|119415041|gb|EAW24979.1| intermembrane space AAA protease IAP-1 [Neosartorya fischeri NRRL
           181]
          Length = 821

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 57/250 (22%), Positives = 94/250 (37%), Gaps = 26/250 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G  EA   L+  +E        +    +    VL VGPPG GKT LA+ VA E 
Sbjct: 351 RFSDVHGCDEAKEELQELVEFLLNPERFSSLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 410

Query: 79  GVNFRSTSGPVIA------KAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F   SG           A  +  L      +   ++FIDE+  +     E    A  
Sbjct: 411 GVPFFYMSGSEFDEVYVGVGAKRVRELFAQARSKSPAIIFIDELDAIGAKRNER-DAAYV 469

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
              L+ ++ E           S   +IAAT    LL   L    RF   + ++  ++   
Sbjct: 470 KQTLNQLLTELDGFSQT----SGVIIIAATNFPQLLDKALTRPGRFDRKVVVDLPDVRGR 525

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             I++   K   ++       ++A+ +RGTP  +G  L  + + A +  ++    ++   
Sbjct: 526 MDILKHHLKNIQISTD----VDVAVLARGTPGFSGADLENLVNQAAIYASRNKKPKVGPK 581

Query: 249 ALLRLAIDKM 258
            L       M
Sbjct: 582 DLDWAKDKIM 591


>gi|88608682|ref|YP_506376.1| putative DNA polymerase III, gamma/tau subunit [Neorickettsia
           sennetsu str. Miyayama]
 gi|88600851|gb|ABD46319.1| putative DNA polymerase III, gamma/tau subunit [Neorickettsia
           sennetsu str. Miyayama]
          Length = 396

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 89/225 (39%), Gaps = 21/225 (9%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
            +  RPR L+E  GQ      L     A+ AR E    +L  GP G GKTT A+ V   L
Sbjct: 7   ANKYRPRLLDEIVGQDFLVKCLS----ASIARDEVAGAILLSGPYGTGKTTTARAVTLSL 62

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI---------LYPAM 129
               R+++ P + K     ++L+     D+L ID      +    +         L    
Sbjct: 63  LCLNRTSALPCL-KCDSCISILSGSHP-DILEIDAASNTGVEDVRMLIEGALYKPLLSKY 120

Query: 130 EDFQLDLMVGEGPSARSVKINL-----SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           + + +D +     SA S  + L            ATT +  +   +  R     RL+   
Sbjct: 121 KSYIVDEVHMLSQSAFSALLKLLEEPPQHVKFFLATTELQKIPATIISRCQ-HYRLSRLS 179

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
              +   + + A+   + +T +A   IA ++ G+ R A  LL +V
Sbjct: 180 RVVIAERLTQVAEKEQIEITQDAIKFIAEKADGSLRDALSLLEQV 224


>gi|58579613|ref|YP_197825.1| DNA polymerase III gamma and tau chains [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58418239|emb|CAI27443.1| DNA polymerase III gamma and tau chains [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 500

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 49/270 (18%), Positives = 92/270 (34%), Gaps = 35/270 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP +  +  GQ          +  A    +    +L  G  G+GKTT A++++  L    
Sbjct: 21  RPSSFNDLIGQDVLV----RILRNAFHLNKVPQSILLTGSSGIGKTTAARIISMCLNCIS 76

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
             TS P       ++  + N    DV+ ID     SI   +I+       P    F++ +
Sbjct: 77  GPTSNPCNTCNNCIS--IKNFNHPDVIEIDAASNTSIEDVKIILENSHYVPITSKFKVYI 134

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               + ++        I ATT V  +   +  R      L     E +
Sbjct: 135 IDEVHMLSNSAFNALLKVLEEPAPYVKFILATTEVKKIPVTIISRCQ-RFDLQRIPTESI 193

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              ++  AK   +   + +   IA  S G+ R A  LL +   ++    ++  T+++   
Sbjct: 194 VNHLRIIAKEENILFDEASIKLIAYNSDGSMRNALSLLEQSAIYSNKNLSEESTKKM--- 250

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
                         ++   L  I  +   G
Sbjct: 251 -----------LGYVNRHVLLKIIESITNG 269


>gi|332360360|gb|EGJ38172.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
           SK49]
          Length = 556

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 47/270 (17%), Positives = 80/270 (29%), Gaps = 53/270 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     R +T  +  GQ    + L+  +E  K         LF GP G GKT++A++ A+
Sbjct: 4   ALYRKYRSQTFGQLVGQQVVATTLRQAVEQGKISHAY----LFSGPRGTGKTSVAKIFAK 59

Query: 77  ELGVNFR------------------------STSGPVIAKAGDLAALLTN------LEDR 106
            +    +                                   ++  +         L   
Sbjct: 60  AMNCPNQKDGEPCNDCYICKAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLAKH 119

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
            V  IDE+H LS      L   +E+                         I ATT +  +
Sbjct: 120 KVYIIDEVHMLSTGAFNALLKTLEEPT------------------ENVVFILATTELHKI 161

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
              +  R       +    + +  I +      G+    E    IA R+ G  R A  +L
Sbjct: 162 PATILSRVQRFEFKSIKTQDIIGHI-EWILDQEGIDFEQEGVQIIARRAEGGMRDALSIL 220

Query: 227 RRVRDFAEVAHAKTITREIADAALLRLAID 256
            +     +     T   E    ++   A+D
Sbjct: 221 DQALSLTQENRLTTDIAEEITGSISLGALD 250


>gi|302414422|ref|XP_003005043.1| replication factor C subunit 2 [Verticillium albo-atrum VaMs.102]
 gi|261356112|gb|EEY18540.1| replication factor C subunit 2 [Verticillium albo-atrum VaMs.102]
          Length = 126

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 39/99 (39%), Gaps = 11/99 (11%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
            +    +   RP+TL + T Q    + L+  ++A+      L H+LF GPPG GKT+   
Sbjct: 31  PRAQPWVEKYRPKTLSDVTAQDHTVTILQRTLQAS-----NLPHMLFYGPPGTGKTSTVL 85

Query: 73  VVARE------LGVNFRSTSGPVIAKAGDLAALLTNLED 105
            +A+E      +       +         +   + N   
Sbjct: 86  ALAKELYGPELIKTRVLELNASDERGISIVREKVKNFAR 124


>gi|257465337|ref|ZP_05629708.1| DNA polymerase III subunits gamma and tau [Actinobacillus minor
           202]
 gi|257450997|gb|EEV25040.1| DNA polymerase III subunits gamma and tau [Actinobacillus minor
           202]
          Length = 694

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 56/310 (18%), Positives = 93/310 (30%), Gaps = 64/310 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+   E  GQ    S L+  +   +     L H  LF G  G+GKT++A++ A+ L   
Sbjct: 11  RPQRFSEVVGQQHVLSALENGLREGR-----LHHAYLFSGTRGVGKTSIARLFAKGLNCE 65

Query: 82  F------------------------RSTSGPVIAKAGDLAALLTNLEDRD------VLFI 111
                                             K  D   LL N++ +       V  I
Sbjct: 66  TGITATPCGECANCKAIEEGRFIDLIEIDAASRTKVEDTRELLDNVQYKPTVGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSRHSFNALLKTLEE------------------PPEYVKFLLATTDPQKLPITIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L   +   +   ++   K   +     A  ++A  + G+ R +  L     D
Sbjct: 168 SRC-MQFHLRALDQTQIAHHLEFILKEEQIPYETAAIEKLAKAAEGSIRDSLSL----TD 222

Query: 232 FAEVAHAKTITREIADAALLRLAIDK-----MGFDQLDLRYLTMIARNFGGGPVGIETIS 286
            A       IT       L  +   +     M     D   +  + +N     V    + 
Sbjct: 223 QAIAVSNANITLSAVSQMLGLIDDHQPLELIMALANADGEKVMAVIQNVAEKGVDWNQLL 282

Query: 287 AGLSEPRDAI 296
             ++E    I
Sbjct: 283 NDVAEVLHQI 292


>gi|323493358|ref|ZP_08098481.1| DNA polymerase III subunits gamma and tau [Vibrio brasiliensis LMG
           20546]
 gi|323312444|gb|EGA65585.1| DNA polymerase III subunits gamma and tau [Vibrio brasiliensis LMG
           20546]
          Length = 714

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 84/249 (33%), Gaps = 25/249 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP    E  GQ    + L    E A A+       LF G  G+GKTT+ ++ A+  G+N 
Sbjct: 11  RPTRFNEVVGQAHVLTAL----ENALAQNRLHHAYLFSGTRGVGKTTIGRLFAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D+L ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGVCDTCKEIDEGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++        + ATT    L   +  R  +   L    ++++
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRC-LQFHLKPISVDNI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              +    +   +A    A   I+  + G+ R A  L     D A       +  +    
Sbjct: 184 HQQLDHILQHENVAAEARALGMISHAADGSMRDALSL----TDQAIALGNGQVLTDSVAH 239

Query: 249 ALLRLAIDK 257
            L  L  D+
Sbjct: 240 MLGTLDTDQ 248


>gi|315180754|gb|ADT87668.1| DNA polymerase III subunits gamma and tau [Vibrio furnissii NCTC
           11218]
          Length = 700

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 53/251 (21%), Positives = 88/251 (35%), Gaps = 29/251 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP    E  GQ    + L    E A A+       LF G  G+GKTT+ ++ A+ L    
Sbjct: 11  RPTKFNEVVGQAHVLTAL----ENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCET 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILY------PAMEDFQL 134
             T+ P     G+ A      + R  D+L ID   R  +     L       PA   F++
Sbjct: 67  GITATP----CGECATCKEIDQGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRFKV 122

Query: 135 DLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            L+               ++++        + ATT    L   +  R  +   L    +E
Sbjct: 123 YLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRC-LQFHLKPISVE 181

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +++  +        +   ++A   IA  + G+ R A  L     D A       +   + 
Sbjct: 182 NIQHQLAHILAAEQVNSDNKALAMIAHAADGSMRDALSL----TDQAIALGNGQVQPNVV 237

Query: 247 DAALLRLAIDK 257
              L  L  D+
Sbjct: 238 SHMLGTLDTDQ 248


>gi|254497438|ref|ZP_05110235.1| hypothetical protein LDG_1842 [Legionella drancourtii LLAP12]
 gi|254353340|gb|EET12078.1| hypothetical protein LDG_1842 [Legionella drancourtii LLAP12]
          Length = 848

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 50/243 (20%), Positives = 93/243 (38%), Gaps = 31/243 (12%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV-GPPGL 65
               NV+     +S+LRP    +F G  E  + +  F+++ K       H+L V GPPG+
Sbjct: 414 FFQLNVNDPYKILSILRPF---DFIGTSEKEAEVGSFLKSIKTNPHLEQHLLLVAGPPGV 470

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIA---------KAGDLAALLTNLEDRDVLFIDEIHR 116
           GKT + + +  + G      +              +   L A +  +++   LFIDEI  
Sbjct: 471 GKTEITKTIVNKEGFKVIEYAVDAEEDKHINQHGYRISKLFAAVAQMKEPICLFIDEI-- 528

Query: 117 LSIIVEEILYPAMEDFQLDL-----MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
                 + L P  +D   D+      V         K+   +  L+  T  +  +   ++
Sbjct: 529 ------DTLLPTNKDTSTDIQSLKETVTTKFQTEIDKLKGKKIVLVGTTNYLERIKPAIR 582

Query: 172 DRFGIPIRLNFYEIEDLKTIVQ---RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            R G  +  +  +  + + I+Q   R A L   +   +   E    S  +PR     + +
Sbjct: 583 SRAGTAVFFDLPDSTNRQLIIQDLLRIAVLEPDSTIIQKIVEAT--SGWSPRQLKNYIEK 640

Query: 229 VRD 231
           V +
Sbjct: 641 VNN 643



 Score = 51.6 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 48/122 (39%), Gaps = 17/122 (13%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE--DRDVLFIDE 113
           H L  GPPG GKT  A+++  +        +        + A + +  +  ++ ++FIDE
Sbjct: 725 HTLLFGPPGGGKTEFARLIVEKTNCPCFVVNPK--NSLTEFAGVFSQAKSCEKAIIFIDE 782

Query: 114 IHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           +   +        PA  +     M G            +   +IAAT  +  +  P+  R
Sbjct: 783 VDSFASA------PAAAELLQTEMDG-------FDKPKNPLVIIAATNHLERIALPVLSR 829

Query: 174 FG 175
           FG
Sbjct: 830 FG 831


>gi|253687471|ref|YP_003016661.1| DNA polymerase III, subunits gamma and tau [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|251754049|gb|ACT12125.1| DNA polymerase III, subunits gamma and tau [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 685

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 82/242 (33%), Gaps = 25/242 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFTQVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
                       D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  EQGVTATPCGQCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++        + ATT    L   +  R  +   L   + E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSRC-LQFHLKALDAEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  +++  +   L     A   +A  + G+ R A  L     D A       +T      
Sbjct: 184 RAHLEQVLQAENLVSEPRALQLLARAADGSLRDALSL----TDQAIAMGQGQVTTASVSQ 239

Query: 249 AL 250
            L
Sbjct: 240 ML 241


>gi|241895204|ref|ZP_04782500.1| DNA-directed DNA polymerase [Weissella paramesenteroides ATCC
           33313]
 gi|241871510|gb|EER75261.1| DNA-directed DNA polymerase [Weissella paramesenteroides ATCC
           33313]
          Length = 588

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 72/226 (31%), Gaps = 21/226 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+   +  GQ      LK  I       +     LF GP G GKT+ A++ A+ +    
Sbjct: 18  RPQKFSDMIGQEIVTKTLKNAI----ITGQITHAYLFNGPRGTGKTSAAKIFAKAINCLH 73

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P      ++     N    D++ +D      +  +  I E++ Y          +
Sbjct: 74  PVDGEP--DGTCEICQAADNGTLGDIIELDAASNNGVDEIREIREDVTYAPTRAKYKVYI 131

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++   +    I ATT    +   +  R            +  
Sbjct: 132 IDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPQKIPATIISRTQ-RFDFKRINAQSA 190

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
              +       G    + A   IA  + G  R A  +L +   F +
Sbjct: 191 YERMVYILNQRGNTYDEAALKVIANAADGGMRDALSILDQALSFGD 236


>gi|257388390|ref|YP_003178163.1| Vesicle-fusing ATPase [Halomicrobium mukohataei DSM 12286]
 gi|257170697|gb|ACV48456.1| Vesicle-fusing ATPase [Halomicrobium mukohataei DSM 12286]
          Length = 703

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 69/309 (22%), Positives = 106/309 (34%), Gaps = 46/309 (14%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAA--------KARAEALDHVLFV 60
           S + + E ADI +      E+  G  E    ++  IE          +   +    VL  
Sbjct: 180 SEDEATETADIDV----NYEDIGGLDEELDQIREMIEMPLSEPERFRRLGIDPPSGVLLH 235

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DVLFID 112
           GPPG GKT +A+ VA E+   F + SGP I     G+    L    +R       +LFID
Sbjct: 236 GPPGTGKTLIARAVANEVDAYFDTISGPEIVSKYKGESEERLREAFERAEDNAPSILFID 295

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           EI  ++   +E            L + +G        +  R  +I AT RV  + + L+ 
Sbjct: 296 EIDSIAGSRDEDADMENRVVAQLLTLMDGLE------DRGRVVVIGATNRVDTIDDALRR 349

Query: 173 --RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVT--------DEAACEIAMRSRGTPRIA 222
             RF   I +   +    + I+    +   +                  A  +  T   A
Sbjct: 350 GGRFDREIEIGVPDEPGRREILDVHTREMPIDDDIQLDDVASQTHGFVGADLATLTTEAA 409

Query: 223 GRLLRRVRDFAEVAHAKTIT----------REIADAALLRLAIDKMGFDQLDLRYLTMIA 272
              LRR  D  +V  A   T          RE    +      D  G D +  R    + 
Sbjct: 410 MTALRRESDDPDVNRADFETAMAAVEPSAMREYVAESPSVSFDDVGGLDDVKERLTEAVE 469

Query: 273 RNFGGGPVG 281
                GP+ 
Sbjct: 470 WPLAYGPLF 478



 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 53/252 (21%), Positives = 86/252 (34%), Gaps = 26/252 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARA--------EALDHVLFVGPPGLGKTTLAQVVARE 77
           + ++  G  +    L   +E   A          +    VL  GPPG GKT LA+ +A E
Sbjct: 450 SFDDVGGLDDVKERLTEAVEWPLAYGPLFSATDTDPPSGVLLYGPPGTGKTLLARAIAGE 509

Query: 78  LGVNFRSTSGPVI--AKAGDLAALLTNLEDR------DVLFIDEIHRLS--IIVEEILYP 127
            GVNF   +GP +     G+    +  + +R       ++F+DEI  ++        +  
Sbjct: 510 SGVNFIHVNGPELLDRYVGESEESVREMFERARQTAPSIVFLDEIDAVAGQRGESNEVSE 569

Query: 128 AMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTN----PLQDRFGIPIRLN 181
            +    L  +  + E P+   +     R TL  A  R G        P  DR      L 
Sbjct: 570 RVVSQLLTELDGITENPNLVVLAATNRRETLDDALLRPGRFEQHVEVPNPDRAARREILA 629

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV--RDFAEVAHAK 239
            +  +           L         A   A+    + R    +   +   D A  A + 
Sbjct: 630 VHTADKPLGDGVDLDGLAAQTEGYSGAQIEALVREASMRAIRAVADDIDPDDVAASAESV 689

Query: 240 TITREIADAALL 251
            I     +AAL 
Sbjct: 690 VIETADFEAALE 701


>gi|74185604|dbj|BAE32694.1| unnamed protein product [Mus musculus]
          Length = 393

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 72/229 (31%), Gaps = 23/229 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T +E  G+      LK  I   +         LF GP G GKTT A+++AR
Sbjct: 36  ALYRRYRPETFDEVIGEDHVIEPLKRAILNNRVNHAY----LFSGPRGCGKTTTARILAR 91

Query: 77  ELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAM 129
            L      T  P        DLA         DV+ ID      +     + E   +  +
Sbjct: 92  ALNCEQGPTPTPCGTCQSCRDLAC--GGPGSIDVIEIDAASHGGVDDARDLRERAFFAPV 149

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                  ++ E             + V+        I ATT    +   ++ R       
Sbjct: 150 HSRYKIYIIDEAHMVTPQGFNALLKLVEEPPPHVKFIFATTEPEKVIGTIRSR-THHYPF 208

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
                + L   +       G+ V       +     G+ R +  +L ++
Sbjct: 209 RLVPPKVLVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVLDQL 257


>gi|325846375|ref|ZP_08169344.1| ATP-dependent metallopeptidase HflB [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325481559|gb|EGC84599.1| ATP-dependent metallopeptidase HflB [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 678

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 58/215 (26%), Positives = 88/215 (40%), Gaps = 28/215 (13%)

Query: 25  RTLEEFTGQVEACSNLKVFI------EAAKARAEALD-HVLFVGPPGLGKTTLAQVVARE 77
           +T  +  GQ EA  +L   +      +  K     L   VL VGPPG GKT LA+ VA E
Sbjct: 170 KTFADVAGQEEAKDSLNEVVDFLHGPQKYKEIGAVLPKGVLLVGPPGTGKTLLAKAVAGE 229

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
             V F S SG           A  +  L    +++   ++FIDEI  +    +   Y   
Sbjct: 230 ANVPFFSISGSEFVEMFVGMGASKVRDLFKQAKEKAPCIVFIDEIDAIGKKRDVSGYSGN 289

Query: 130 EDFQLD----LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183
           ++ +      L   +G  A    + LS      AT R  +L   L    RF   +++   
Sbjct: 290 DEREQTLNQLLNEMDGFDATEGVVLLS------ATNRPEILDPALTRPGRFDRRVQVELP 343

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGT 218
           +++  + I++  AK       D    EIA R+ GT
Sbjct: 344 DLKGREDILKVHAKKIKRE-NDIDYEEIAKRTAGT 377


>gi|242309372|ref|ZP_04808527.1| DNA polymerase III subunits gamma and tau [Helicobacter pullorum
           MIT 98-5489]
 gi|239523943|gb|EEQ63809.1| DNA polymerase III subunits gamma and tau [Helicobacter pullorum
           MIT 98-5489]
          Length = 573

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 58/325 (17%), Positives = 98/325 (30%), Gaps = 64/325 (19%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLA 71
              +A     RP   +E  GQ      L + +E+ +     L H  LF G  G GKT+ A
Sbjct: 3   QHNEALALKYRPMDFDELVGQEAVSRTLSLALESKR-----LSHAYLFSGLRGSGKTSSA 57

Query: 72  QVVARELGVNF--------------------------RSTSGPVIAKAGDLAALLT---- 101
           ++ AR L                                  G    K  D+  L+     
Sbjct: 58  RIFARALQCENGPKAKPCGVCANCVAANPHKMSHIDIIELDGASSRKIDDIRDLIEQTKY 117

Query: 102 --NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA 159
             N+    +  IDE+H L+      L   +E+                         I A
Sbjct: 118 RPNMGRYKIFIIDEVHMLTKEAFNALLKTLEE------------------PPEYVKFILA 159

Query: 160 TTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTP 219
           TT    L   +  R            + +   ++       +   DEA   +     G+ 
Sbjct: 160 TTDPLKLPATILSRTQHFRFKRI-SDKSIFNHLKSILHKENITYQDEALNMLIRSGSGSL 218

Query: 220 RIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQL---DLRYLTMIARNFG 276
           R    LL +V  ++   +  T     +   L+        FD++   D + L      F 
Sbjct: 219 RDTLTLLDQVIIYS--NYNITAESCASMLGLINPQSLSDFFDEIFKKDKKVLLETIEGFF 276

Query: 277 GGPVG--IETISAGLSEPRDAIEDL 299
                  ++ +S  L +   + ED+
Sbjct: 277 EYECEMLLDEMSIFLKDKLLSAEDV 301


>gi|85058667|ref|YP_454369.1| DNA polymerase III gamma and tau subunits [Sodalis glossinidius
           str. 'morsitans']
 gi|84779187|dbj|BAE73964.1| DNA polymerase III gamma and tau subunits [Sodalis glossinidius
           str. 'morsitans']
          Length = 734

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 44/242 (18%), Positives = 83/242 (34%), Gaps = 25/242 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        L  G  G+GKTT+A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLLSGTRGVGKTTIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGQCDNCREIKQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++   +    + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  +    +   +     A   +A  + G+ R A  L     D A       ++ E    
Sbjct: 184 RNQLSSVLQQEQIVTEPRALQLLARAADGSMRDALSL----TDQAIAMGQGEVSAEAVSL 239

Query: 249 AL 250
            L
Sbjct: 240 ML 241


>gi|50085108|ref|YP_046618.1| DNA polymerase III subunits tau and gamma [Acinetobacter sp. ADP1]
 gi|49531084|emb|CAG68796.1| DNA polymerase III, tau and gamma subunits (DNA elongation factor
           III) [Acinetobacter sp. ADP1]
          Length = 711

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 82/257 (31%), Gaps = 53/257 (20%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RPR   E  GQ          + +A  R       LF G  G+GKTT+A+++A+ L
Sbjct: 6   ARKYRPRNFIELVGQNHV----SRALTSALERGRLHHAYLFTGTRGVGKTTIARILAKCL 61

Query: 79  GVNFRSTS------------------------GPVIAKAGDLAALLTNL------EDRDV 108
                 TS                             K  D   LL N+          V
Sbjct: 62  NCETGITSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKV 121

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
             IDE+H LS      L   +E+                         + ATT    L  
Sbjct: 122 YLIDEVHMLSTHSFNALLKTLEE------------------PPEHVKFLFATTDPQKLPI 163

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            +  R  +   L    ++++ + +        +    +A  +IA  ++G+ R A  L  +
Sbjct: 164 TVISRC-LQFTLRPLAVDEITSHLTTILAKEQIEADKDAIWQIAESAQGSLRDALSLTDQ 222

Query: 229 VRDFAEVAHAKTITREI 245
              + + A      +E+
Sbjct: 223 AIAYGQGAVHHQDVKEM 239


>gi|116491393|ref|YP_810937.1| DNA polymerase III, gamma/tau subunit [Oenococcus oeni PSU-1]
 gi|116092118|gb|ABJ57272.1| DNA polymerase III, gamma/tau subunit [Oenococcus oeni PSU-1]
          Length = 594

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 43/217 (19%), Positives = 79/217 (36%), Gaps = 24/217 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPRT  +  GQ      L+  +++ K         LF GP G GKT++A++ ARE+    
Sbjct: 10  RPRTFSDLVGQTVIAQTLENALKSNKVGHAY----LFAGPRGTGKTSVAKIFAREIEGIP 65

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE-- 140
             T     +   ++ A   N        +DEI  L        Y  +E      ++ E  
Sbjct: 66  EDTDRESFSDIIEIDAASNNG-------VDEIRNLRDAAN---YAPIEYQFKIYIIDEVH 115

Query: 141 -------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
                      ++++   ++   I ATT    +   +  R       +  +++ +   ++
Sbjct: 116 MLSTGAFNALLKTIEEPPAQVKFILATTEPQKIPATILSRVQ-RFDFHRIDVDQIVKRLE 174

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
                  +A    A   +A  S G  R A  +L +  
Sbjct: 175 FVLDDQKIAYDPAALKIVANASDGGLRDALSILDQAV 211


>gi|307258490|ref|ZP_07540227.1| DNA polymerase III subunits gamma and tau [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306867394|gb|EFM99245.1| DNA polymerase III subunits gamma and tau [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
          Length = 466

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 44/245 (17%), Positives = 77/245 (31%), Gaps = 55/245 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+   E  GQ    S L+  +   +     L H  LF G  G+GKT++A++ A+ L   
Sbjct: 11  RPQRFSEVVGQQHVLSALENGLREGR-----LHHAYLFSGTRGVGKTSIARLFAKGLNCE 65

Query: 82  F------------------------RSTSGPVIAKAGDLAALLTNLEDRD------VLFI 111
                                             K  D   LL N++ +       V  I
Sbjct: 66  TGITATPCGECANCKAIEEGRFIDLIEIDAASRTKVEDTRELLDNVQYKPTVGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSRHSFNALLKTLEE------------------PPEYVKFLLATTDPQKLPITIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L   +   +   ++   +   +     A  ++A  ++G+ R +  L  +   
Sbjct: 168 SRC-MQFHLRALDQAQIANHLEFILQQENIPYESAAIEKLAKAAQGSIRDSLSLTDQAIA 226

Query: 232 FAEVA 236
            +   
Sbjct: 227 VSNAN 231


>gi|195488933|ref|XP_002092523.1| GE11626 [Drosophila yakuba]
 gi|194178624|gb|EDW92235.1| GE11626 [Drosophila yakuba]
          Length = 735

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 60/271 (22%), Positives = 100/271 (36%), Gaps = 24/271 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T E+  G  EA   LK  +E  K+         +    VL VGPPG GKT LA+ VA E 
Sbjct: 297 TFEDVKGCDEAKQELKEVVEFLKSPEKFSNLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 356

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F   +GP          A  +  L    + R   V+FIDEI  +       +     
Sbjct: 357 KVPFFHAAGPEFDEVLVGQGARRVRDLFKAAKARAPCVIFIDEIDSVGAKRTNSVLHPYA 416

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
           +  ++ ++ E               ++ AT R   L   L    RF + + ++  +    
Sbjct: 417 NQTINQLLSEMDGFHQNAG----VIVLGATNRRDDLDQALLRPGRFDVEVMVSTPDFTGR 472

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAM-RSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           K I+     LT +   +     +A   S  T      ++ +    A +  A+T++ +  +
Sbjct: 473 KEIL--SLYLTKILHDEIDLDMLARGTSGFTGADLENMINQAALRAAIDGAETVSMKHLE 530

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
            A  ++ +      +L       I     GG
Sbjct: 531 TARDKVLMGPERKARLPDEEANTITAYHEGG 561


>gi|324990827|gb|EGC22762.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
           SK353]
          Length = 556

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 47/270 (17%), Positives = 81/270 (30%), Gaps = 53/270 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     R +T  +  GQ    + L+  +E  K         LF GP G GKT++A++ A+
Sbjct: 4   ALYRKYRSQTFGQLVGQQVVATTLRQAVEQGKISHAY----LFSGPRGTGKTSVAKIFAK 59

Query: 77  ELGVNFR------------------------STSGPVIAKAGDLAALLTN------LEDR 106
            +    +                                   ++  +         L   
Sbjct: 60  AMNCPNQKDGEPCNDCYICQAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLAKH 119

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
            V  IDE+H LS      L   +E+                         I ATT +  +
Sbjct: 120 KVYIIDEVHMLSTGAFNALLKTLEEPT------------------ENVVFILATTELHKI 161

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
              +  R       +    + +  I +   +  G+    E    IA R+ G  R A  +L
Sbjct: 162 PATILSRVQRFEFKSIKTQDIIGHI-EWILEQEGIDFEQEGVQIIARRAEGGMRDALSIL 220

Query: 227 RRVRDFAEVAHAKTITREIADAALLRLAID 256
            +     +     T   E    ++   A+D
Sbjct: 221 DQALSLTQENRLTTDIAEEITGSISLGALD 250


>gi|153833856|ref|ZP_01986523.1| DNA polymerase III tau subunit [Vibrio harveyi HY01]
 gi|148869798|gb|EDL68772.1| DNA polymerase III tau subunit [Vibrio harveyi HY01]
          Length = 732

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 53/265 (20%), Positives = 86/265 (32%), Gaps = 57/265 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP   ++  GQ    + L    E A A+       LF G  G+GKT++ ++ A+ L    
Sbjct: 11  RPNKFDQVVGQNHVLTAL----ENALAQNRLHHAYLFSGTRGVGKTSIGRLFAKGLNCET 66

Query: 83  RSTSGP------------------------VIAKAGDLAALLTNLEDRD------VLFID 112
             T+ P                           K  D   LL N++ +       V  ID
Sbjct: 67  GITANPCGECDTCREIDEGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRFKVYLID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS      L   +E+                         + ATT    L   +  
Sbjct: 127 EVHMLSRHSFNALLKTLEE------------------PPEYVKFLLATTDPQKLPVTILS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R  +   L    ++D+   +    +   ++    A   I+  + G+ R A  L     D 
Sbjct: 169 RC-LQFHLKPISVDDIHQQLDHILEKEQVSAEARALGMISHAADGSMRDALSL----TDQ 223

Query: 233 AEVAHAKTITREIADAALLRLAIDK 257
           A      TI  +I    L  +  D+
Sbjct: 224 AIALGNGTIQTDIVSHMLGTIDTDQ 248


>gi|323351733|ref|ZP_08087387.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
           VMC66]
 gi|322122219|gb|EFX93945.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
           VMC66]
          Length = 556

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 47/270 (17%), Positives = 81/270 (30%), Gaps = 53/270 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     R +T  +  GQ    + L+  +E  K         LF GP G GKT++A++ A+
Sbjct: 4   ALYRKYRSQTFGQLVGQQVVATTLRQAVEQGKISHAY----LFSGPRGTGKTSVAKIFAK 59

Query: 77  ELGVNFR------------------------STSGPVIAKAGDLAALLTN------LEDR 106
            +    +                                   ++  +         L   
Sbjct: 60  AMNCPNQKDGEPCNDCYICKAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLAKH 119

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
            V  IDE+H LS      L   +E+                         I ATT +  +
Sbjct: 120 KVYIIDEVHMLSTGAFNALLKTLEEPT------------------ENVVFILATTELHKI 161

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
              +  R       +    + +  I +   +  G+    E    IA R+ G  R A  +L
Sbjct: 162 PATILSRVQRFEFKSIKTQDIIGHI-EWILEQEGIDFEQEGVQIIARRAEGGMRDALSIL 220

Query: 227 RRVRDFAEVAHAKTITREIADAALLRLAID 256
            +     +     T   E    ++   A+D
Sbjct: 221 DQALSLTQENRLTTDIAEEITGSISLGALD 250


>gi|322385297|ref|ZP_08058942.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus cristatus
           ATCC 51100]
 gi|321270556|gb|EFX53471.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus cristatus
           ATCC 51100]
          Length = 554

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 46/270 (17%), Positives = 81/270 (30%), Gaps = 53/270 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     R +T  +  GQ    + L+  +E  K         LF GP G GKT++A++ A+
Sbjct: 4   ALYRKYRSQTFGQLVGQQVVATTLRQAVEQGKISHAY----LFSGPRGTGKTSVAKIFAK 59

Query: 77  ELGVNFR------------------------STSGPVIAKAGDLAALLTN------LEDR 106
            +    +                                   ++  +         +   
Sbjct: 60  AMNCPNQKDGEPCNDCYICKAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSMAKH 119

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
            V  IDE+H LS      L   +E+                         I ATT +  +
Sbjct: 120 KVYIIDEVHMLSTGAFNALLKTLEEPT------------------ENVVFILATTELHKI 161

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
              +  R       +    + +  I +   +  G+    E    IA R+ G  R A  +L
Sbjct: 162 PATILSRVQRFEFKSIKTQDIIGHI-EWILEQEGIDFEQEGVQIIARRAEGGMRDALSIL 220

Query: 227 RRVRDFAEVAHAKTITREIADAALLRLAID 256
            +     +     T   E    ++   A+D
Sbjct: 221 DQALSLTQENRLTTDIAEEITGSISLGALD 250


>gi|307256293|ref|ZP_07538076.1| DNA polymerase III subunits gamma and tau [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306865119|gb|EFM97019.1| DNA polymerase III subunits gamma and tau [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 465

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 44/245 (17%), Positives = 77/245 (31%), Gaps = 55/245 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+   E  GQ    S L+  +   +     L H  LF G  G+GKT++A++ A+ L   
Sbjct: 11  RPQRFSEVVGQQHVLSALENGLREGR-----LHHAYLFSGTRGVGKTSIARLFAKGLNCE 65

Query: 82  F------------------------RSTSGPVIAKAGDLAALLTNLEDRD------VLFI 111
                                             K  D   LL N++ +       V  I
Sbjct: 66  TGITATPCGECANCKAIEEGRFIDLIEIDAASRTKVEDTRELLDNVQYKPTVGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSRHSFNALLKTLEE------------------PPEYVKFLLATTDPQKLPITIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L   +   +   ++   +   +     A  ++A  ++G+ R +  L  +   
Sbjct: 168 SRC-MQFHLRALDQAQIANHLEFILQQENIPYESAAIEKLAKAAQGSIRDSLSLTDQAIA 226

Query: 232 FAEVA 236
            +   
Sbjct: 227 VSNAN 231


>gi|225351267|ref|ZP_03742290.1| hypothetical protein BIFPSEUDO_02859 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225158723|gb|EEG71965.1| hypothetical protein BIFPSEUDO_02859 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 876

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 55/283 (19%), Positives = 93/283 (32%), Gaps = 30/283 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     RP T +   GQ +    L   ++  K     L H  LF GP G GKT+ A+++A
Sbjct: 4   ALYRRYRPDTFDGVIGQDQVTIPLMRALDENK-----LTHAYLFSGPRGCGKTSSARILA 58

Query: 76  RELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------P 127
           R +      TS P        DLA         DV+ ID      +     L       P
Sbjct: 59  RCVNCAKGPTSHPCGECESCKDLA--TGGPGSIDVVEIDAASHNGVDDARELRERAGFAP 116

Query: 128 AMEDFQLDLMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           A + +++ ++         G     + V+        I ATT    +   ++ R      
Sbjct: 117 ARDRYKIFILDEAHMVTPQGFNALLKIVEEPPEHVMFIFATTEPDKVIGTIRSR-THHYP 175

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR----VRDFAEV 235
                 E +   ++R  +   +               G+ R    +L +      D +  
Sbjct: 176 FRLVPQEVMGPYLERICEDEHIEAEPGVLRLAMRAGGGSVRDTLSVLDQLMVGAVDGSIA 235

Query: 236 AHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
             +          AL+  A+D +  D+       +I +   GG
Sbjct: 236 YDSAVALLGFTPDALIGEAVDAV-VDKNGEALYGVIQKVVVGG 277


>gi|15604695|ref|NP_221213.1| DNA polymerase III subunits gamma and tau [Rickettsia prowazekii
           str. Madrid E]
 gi|3861390|emb|CAA15289.1| DNA POLYMERASE III SUBUNITS GAMMA AND TAU (dnaX) [Rickettsia
           prowazekii]
 gi|292572530|gb|ADE30445.1| DNA polymerase III gamma and tau chains [Rickettsia prowazekii
           Rp22]
          Length = 541

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 87/248 (35%), Gaps = 21/248 (8%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           +L  + +Q        RP    E  GQ      L   I   +         L  G  G+G
Sbjct: 35  VLENSSNQYIPFARKYRPSNFTELQGQEVLVKILSYTILNDRLVGGY----LLTGIRGIG 90

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLT--NLEDRDVLFIDEIHRLS-----I 119
           KTT A+++A+ +  +   T    I         ++  N    D++ ID   + S      
Sbjct: 91  KTTSARIIAKAVNCSALITENTAIKTCEKCTNCVSFNNHNHPDIIEIDAASKTSIDDIRR 150

Query: 120 IVEEILYPAMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           I+E   Y  ++      ++ E             ++++        I ATT V  + + +
Sbjct: 151 IIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHVIFIFATTEVQKVPSTI 210

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
             R      L     E++  ++Q   K   L    EA   IA +S G+ R A  +L +  
Sbjct: 211 ISRCQ-RYDLRRLSFEEIFKLLQYITKQENLIADVEALRIIAHKSEGSARDAVSILDQAA 269

Query: 231 DFAEVAHA 238
             +  +  
Sbjct: 270 SMSAKSGN 277


>gi|314922555|gb|EFS86386.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL001PA1]
          Length = 627

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 47/237 (19%), Positives = 74/237 (31%), Gaps = 23/237 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T +E  G+      LK  I   +         LF GP G GKTT A+++AR
Sbjct: 100 ALYRRYRPETFDEVIGEDHVIEPLKRAILNNRVNHAY----LFSGPRGCGKTTTARILAR 155

Query: 77  ELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAM 129
            L      T  P        DLA         DV+ ID      +     + E   +  +
Sbjct: 156 ALNCEQGPTPTPCGTCQSCRDLAC--GGPGSIDVIEIDAASHGGVDDARDLRERAFFAPV 213

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                  ++ E             + V+        I ATT    +   ++ R       
Sbjct: 214 HSRYKIYIIDEAHMVTPQGFNALLKLVEEPPPHVKFIFATTEPEKVIGTIRSR-THHYPF 272

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                + L   +       G+ V       +     G+ R +  +L ++   A   H
Sbjct: 273 RLVPPKVLVDYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVLDQLLGGAADGH 329


>gi|307249479|ref|ZP_07531467.1| DNA polymerase III subunits gamma and tau [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306858472|gb|EFM90540.1| DNA polymerase III subunits gamma and tau [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
          Length = 466

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 44/245 (17%), Positives = 77/245 (31%), Gaps = 55/245 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+   E  GQ    S L+  +   +     L H  LF G  G+GKT++A++ A+ L   
Sbjct: 11  RPQRFSEVVGQQHVLSALENGLREGR-----LHHAYLFSGTRGVGKTSIARLFAKGLNCE 65

Query: 82  F------------------------RSTSGPVIAKAGDLAALLTNLEDRD------VLFI 111
                                             K  D   LL N++ +       V  I
Sbjct: 66  TGITATPCGECANCKAIEEGRFIDLIEIDAASRTKVEDTRELLDNVQYKPTVGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSRHSFNALLKTLEE------------------PPEYVKFLLATTDPQKLPITIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L   +   +   ++   +   +     A  ++A  ++G+ R +  L  +   
Sbjct: 168 SRC-MQFHLRALDQAQIANHLEFILQQENIPYESVAIEKLAKAAQGSIRDSLSLTDQAIA 226

Query: 232 FAEVA 236
            +   
Sbjct: 227 VSNAN 231


>gi|237753173|ref|ZP_04583653.1| DNA polymerase III gamma and tau [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229375440|gb|EEO25531.1| DNA polymerase III gamma and tau [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 587

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 60/319 (18%), Positives = 103/319 (32%), Gaps = 68/319 (21%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQ 72
           ++ A     RP   +E  GQ      L + +++ +     L H  LF G  G GKT+ A+
Sbjct: 2   EQQALALKYRPMDFDELVGQEAVSRTLSLALDSKR-----LSHAYLFSGLRGSGKTSSAR 56

Query: 73  VVARELGVNFRSTS--------------------------GPVIAKAGDLAALLT----- 101
           + AR L       S                          G    K  D+  L+      
Sbjct: 57  IFARALQCESGPRSKPCGTCANCLAANPHKMSHIDIMELDGASNRKIDDIRDLIEQTKYH 116

Query: 102 -NLEDRDVLFIDEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLS-----R 153
            N+    +  IDE+H L+      L   +E+    +  ++      +     LS     R
Sbjct: 117 PNIGRFKIFIIDEVHMLTREAFNALLKTLEEPPEYVKFILATTDPLKLPATILSRTQHFR 176

Query: 154 FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAM 213
           F  I+  +    L   LQ+          Y+ E L  +++ GA      +T      I  
Sbjct: 177 FKRISDRSIFEHLKKILQNE------QIPYQEEALGMLIRSGAGSLRDTLTLLDQAIIYS 230

Query: 214 RSRGTPRIAGRLLRRVRDFAEVAHAK---TITREIADAALLRLAIDKMG--FDQL----- 263
               T  +   +L  +   +  A  +   T  R+     L      + G   D++     
Sbjct: 231 SYNVTSEVCANMLGLINAESLNALFECIFTQDRDSLLKMLEGFFEYECGMLLDEMSIFLK 290

Query: 264 -------DLRYLTMIARNF 275
                  D RY +++   F
Sbjct: 291 EKLLKGNDTRYSSLLIDRF 309


>gi|169824209|ref|YP_001691820.1| DNA polymerase III subunits gamma and tau [Finegoldia magna ATCC
           29328]
 gi|167831014|dbj|BAG07930.1| DNA polymerase III subunits gamma and tau [Finegoldia magna ATCC
           29328]
          Length = 537

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 79/227 (34%), Gaps = 27/227 (11%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVAREL 78
              RP T ++  GQ      LK  IE      + + H  +F G  G GKT+ A++ AR +
Sbjct: 6   RKYRPDTFDKVYGQKHITDILKNQIE-----TKNISHAYIFSGSRGTGKTSCAKIFARAI 60

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHR-----LSIIVEEILYPAMED 131
                    P            ++LE+    ++ +D         +  + ++++YP  + 
Sbjct: 61  NCLDLQNGNP----CNKCENCQSSLEESTLDIVEMDAASNRRIDDIRELRDKVIYPPTKL 116

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             + ++        I ATT +  +   +  R         
Sbjct: 117 KYKVYIIDEAHMITNEGFNALLKIMEEPPKHLVFILATTEIDKIPQTILSRCQRYEFKMI 176

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
              +    I +         + D+A   IA ++ G  R A  +L +V
Sbjct: 177 NSKDISDNI-KYILNDLNRKMDDDAIELIANKADGAMRDALSILDQV 222


>gi|326570261|gb|EGE20306.1| DNA polymerase III gamma and tau subunit [Moraxella catarrhalis
           BC8]
          Length = 748

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 50/234 (21%), Positives = 80/234 (34%), Gaps = 23/234 (9%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQ 72
           Q        RP+   E  GQ      L   I+  +     L H  LF G  G+GKTT+A+
Sbjct: 4   QYQVLARKYRPKNFSELLGQSHVAQALSNAIDTGR-----LHHAYLFTGTRGVGKTTIAR 58

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL-----YP 127
           ++A+ L      TS P      D    +      D++ ID   R  +     L     YP
Sbjct: 59  ILAKCLNCETGMTSQP--CGVCDTCISIDQGRFLDLIEIDAASRTKVEDTRELLENVPYP 116

Query: 128 AMEDFQLDLMVGEGPS--ARSVKINLS-------RFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++      ++ E       S    L            + ATT    L   +  R  +  
Sbjct: 117 PVQGRYKVYLIDEVHMLSTHSFNALLKTLEEPPDYVKFVFATTDPQKLPITIISRC-LQF 175

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
            L       L   + +      +  T+ A  ++A  ++G+ R A  L  +   F
Sbjct: 176 VLRPLPQACLSDHLAKVLDAEKIPFTENALWQLASAAKGSVRDALSLTDQAIAF 229


>gi|325689862|gb|EGD31866.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
           SK115]
          Length = 556

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 47/270 (17%), Positives = 81/270 (30%), Gaps = 53/270 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     R +T  +  GQ    + L+  +E  K         LF GP G GKT++A++ A+
Sbjct: 4   ALYRKYRSQTFGQLVGQQVVATTLRQAVEQGKISHAY----LFSGPRGTGKTSVAKIFAK 59

Query: 77  ELGVNFR------------------------STSGPVIAKAGDLAALLTN------LEDR 106
            +    +                                   ++  +         L   
Sbjct: 60  AMNCPNQKDGEPCNDCYICQAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLAKH 119

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
            V  IDE+H LS      L   +E+                         I ATT +  +
Sbjct: 120 KVYIIDEVHMLSTGAFNALLKTLEEPT------------------ENVVFILATTELHKI 161

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
              +  R       +    + +  I +   +  G+    E    IA R+ G  R A  +L
Sbjct: 162 PATILSRVQRFEFKSIKTQDIIGHI-EWILEQEGINFEQEGVQIIARRAEGGMRDALSIL 220

Query: 227 RRVRDFAEVAHAKTITREIADAALLRLAID 256
            +     +     T   E    ++   A+D
Sbjct: 221 DQALSLTQENRLTTDIAEEITGSISLGALD 250


>gi|317123591|ref|YP_004097703.1| DNA polymerase III subunits gamma and tau [Intrasporangium calvum
           DSM 43043]
 gi|315587679|gb|ADU46976.1| DNA polymerase III, subunits gamma and tau [Intrasporangium calvum
           DSM 43043]
          Length = 779

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 55/173 (31%), Gaps = 22/173 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP +  E  GQ      L   +   +         LF GP G GKTT A+++AR
Sbjct: 4   ALYRRYRPESFAEVIGQEHVTEPLMQALRTGRVGHAY----LFSGPRGCGKTTSARILAR 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILY------PA 128
              +N      P           L        DV+ ID      +     L       PA
Sbjct: 60  --CLNCEEGPTPTPCGVCQSCVALARGGPGSVDVIEIDAASHGGVDDARDLRERASYGPA 117

Query: 129 MEDFQLDLMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
              F++ ++         G     + V+        + ATT    +   ++ R
Sbjct: 118 QSRFKIYIIDEAHMVTPQGFNALLKIVEEPPEHVKFVFATTEPEKVIGTIRSR 170


>gi|315170423|gb|EFU14440.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
           TX1342]
          Length = 586

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 50/294 (17%), Positives = 99/294 (33%), Gaps = 30/294 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           R +  ++  GQ      LK  I     + +     LF GP G GKT+ A++ A+ +    
Sbjct: 11  RSQRFDDVVGQKAITQTLKNAI----VQKKTSHAYLFTGPRGTGKTSAAKIFAKAINCKH 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P      +    +T     DV+ ID      +  +  I ++  Y   +      +
Sbjct: 67  SQDGEP--CNVCETCVAITEGRLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQAEYKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT    +   +  R            +D+
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRTQ-RFDFKRISTQDI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              +    +   L   ++A   I   + G  R A  +L +   F++            + 
Sbjct: 184 VDHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSILDQTISFSDEKV-------TLED 236

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           A+       + ++ +D      +A +      G+E+I     E R  +EDL+  
Sbjct: 237 AMQVTG--SLTYEMMDHYIQCCVAGDVERALEGLESILGEGKEARRFLEDLLLY 288


>gi|254458186|ref|ZP_05071612.1| DNA polymerase III gamma and tau subunits DnaX [Campylobacterales
           bacterium GD 1]
 gi|207085022|gb|EDZ62308.1| DNA polymerase III gamma and tau subunits DnaX [Campylobacterales
           bacterium GD 1]
          Length = 585

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 69/215 (32%), Gaps = 44/215 (20%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVV 74
           +      RP   +E  GQ      L + +++ +     L H  LF G  G GKT+ A++ 
Sbjct: 6   EVLARKYRPSNFDELIGQDTIAQTLSLALDSNR-----LSHAYLFSGLRGSGKTSTARIF 60

Query: 75  ARE------------------------LGVNFRSTSGPVIAKAGDLAALLTNLEDRD--- 107
           A+                           ++          K  D+  L+   + R    
Sbjct: 61  AKALICEQGMSHEPCGVCQNCKLAVENRHMDIVEMDAASSRKIDDIRDLIEQTKYRPASA 120

Query: 108 ---VLFIDEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTR 162
              +  IDE+H L+      L   +E+    +  ++      +     LSR       + 
Sbjct: 121 RFKIFIIDEVHMLTKEAFNALLKTLEEPPAYVKFILATTDPLKLPATILSRTQHFRFKSI 180

Query: 163 VGLLTNPLQDRFGIPIRLNF--YEIEDLKTIVQRG 195
               T  + D     + L    YE + L  I+ R 
Sbjct: 181 A---TKKIIDHLAHILNLEEIKYETDAL-EILARS 211


>gi|187933489|ref|YP_001887621.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum B
           str. Eklund 17B]
 gi|187721642|gb|ACD22863.1| DNA polymerase III, gamma and tau subunit [Clostridium botulinum B
           str. Eklund 17B]
          Length = 546

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 48/243 (19%), Positives = 87/243 (35%), Gaps = 27/243 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPRT  +  GQ    + LK      +   + + H  LF G  G GKT+ A+V+A+ L   
Sbjct: 11  RPRTFNDVVGQEHITTTLK-----NEILNDRIAHAYLFCGTRGTGKTSTAKVMAKALNCF 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHR-----LSIIVEEILYPAMEDFQLDL 136
                G    +      +   L   DV  +D         +  I+++  YP  E      
Sbjct: 66  NIQD-GEPCNECEMCKKINEGLSM-DVTELDAASNNGIDRIRDIIDDTKYPPQEGKYKIY 123

Query: 137 MVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ++ E             ++++   S    I ATT    L   +  R            +D
Sbjct: 124 ILDEVHMLSGGAVNAFLKTLEEPPSNVIFILATTDPQKLPITILSRCQ-RFDFKRINQKD 182

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           +   +++  +   ++V +++   IA  + G  R +  +L    D A       I  +   
Sbjct: 183 ISDRLRKITESQNVSVDEKSLDLIARVADGAMRDSLSIL----DQAIAMGDNNIKYDDLI 238

Query: 248 AAL 250
           + L
Sbjct: 239 SIL 241


>gi|320580148|gb|EFW94371.1| Putative ATPase of the AAA family [Pichia angusta DL-1]
          Length = 809

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 54/264 (20%), Positives = 85/264 (32%), Gaps = 22/264 (8%)

Query: 27  LEEFTGQV-EACS--NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFR 83
           L++   Q+ E      L   I  A    E    VL  GPPG GKTT+A  +A EL V F 
Sbjct: 190 LDDVVSQLMEVVGMPVLHPEIYMA-TGIEPPRGVLLHGPPGCGKTTIAYALAGELQVPFI 248

Query: 84  STSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           S S P +           +  +    +     ++F DEI  ++   +      ME   + 
Sbjct: 249 SISAPSVVSGMSGESEKKVREIFDEAKQLAPCLVFFDEIDAITPKRDGGAQREMERRIVA 308

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQ 193
            ++         K +     +I AT R   L   L+   RF   I +N         I++
Sbjct: 309 QLLTSMDELSLDKTDGKPVIIIGATNRPDSLDTALRRAGRFDREICINVPNEHARFKILE 368

Query: 194 ------RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL--LRRVRDFAEVAHAKTITREI 245
                 R +    L    +               A  +  ++R+         K +  E 
Sbjct: 369 SMVKNLRISGELDLLSIAKMTPGFVGADLKALVTAAGISAIKRIFTSLSEEDEKKLLLEG 428

Query: 246 ADAALLRLAIDKMGFDQLDLRYLT 269
                     D M  D+     L 
Sbjct: 429 VQLQQEENKEDGMELDENPEELLQ 452



 Score = 47.4 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 49/204 (24%), Positives = 64/204 (31%), Gaps = 36/204 (17%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLT 101
           K    A   VL  GPPG GKT LA+ VA E   NF S  GP +           +  + T
Sbjct: 545 KVGITAPAGVLMWGPPGCGKTLLAKAVANESKANFISVKGPELLNKYVGESERAVRQVFT 604

Query: 102 NLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA 159
                   ++F DE+  L    E  L  A                       SR      
Sbjct: 605 RARASVPCIIFFDELDALVPKRESSLSEAS----------------------SRVVNTLL 642

Query: 160 TTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTD-EAACEIAMRSRGT 218
           T   G     L DR GI +       + +   + R  +L      +   A E     +  
Sbjct: 643 TELDG-----LNDRKGIFVIGATNRPDMIDPAMLRPGRLDKTLYIELPNASERLEILKTL 697

Query: 219 PRIAGRLLRRVRDFAEVAHAKTIT 242
               G  L    D A VAH +   
Sbjct: 698 IASNGTPLDSSVDLAVVAHDERCR 721


>gi|47213597|emb|CAG07263.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 350

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 47/235 (20%), Positives = 83/235 (35%), Gaps = 40/235 (17%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           S   + E   +   RP  L++  G  E  S L+VF     AR   + +++  GPPG GKT
Sbjct: 23  STAGTYELPWVEKYRPLKLDQIVGNEETVSRLEVF-----AREGNVPNIIIAGPPGTGKT 77

Query: 69  TLAQVVARE-------------LGVNFRSTSGPVIAKAGDLAALLTNL---EDRDVLFID 112
           T    +AR                 N R     V+     + A            ++ +D
Sbjct: 78  TSILCLARALLGASMKDAVLELNASNDRHRGIDVVRNKIKMFAQQKVTLPKGRHKIIILD 137

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E   ++   ++ L   ME +                   +RF    A      +  P+Q 
Sbjct: 138 EADSMTDGAQQALRRIMEIYSKT----------------TRF--ALACNASDKIIEPIQS 179

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
           R  +       + + L   +Q   +  GL+V+++    +   ++G  R A   L+
Sbjct: 180 RCAVLRYSKLTDGQILAR-LQDVVEKEGLSVSEDGLEAVIFTAQGDMRQALNNLQ 233


>gi|157167438|ref|XP_001660693.1| metalloprotease m41 ftsh [Aedes aegypti]
 gi|108873589|gb|EAT37814.1| metalloprotease m41 ftsh [Aedes aegypti]
          Length = 598

 Score = 62.4 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 55/245 (22%), Positives = 93/245 (37%), Gaps = 24/245 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T E+  G  EA   LK  +E  K          +    VL VGPPG GKT LA+ VA E 
Sbjct: 154 TFEDVKGCDEAKQELKEVVEFLKNPDKFSNLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 213

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F   +GP          A  +  L    ++R   V+FIDEI  +       +     
Sbjct: 214 GVPFFHAAGPEFDEVLVGQGARRVRDLFKAAKERAPCVIFIDEIDSVGAKRTNSVLHPYA 273

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
           +  ++ ++ E    +  +       ++ AT R   L   L    RF + + +   +    
Sbjct: 274 NQTINQLLSEMDGFQQNEG----VIVLGATNRRDDLDQALLRPGRFDVEVVVPTPDFTGR 329

Query: 189 KTIVQRGA-KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           K I+     K+    +  +        +  T      ++ +    A +  A+T+T +  +
Sbjct: 330 KEILTHYLSKILSKEINIDQLARGT--TGFTGADIENMVNQAALRAAIDGAETVTMKHLE 387

Query: 248 AALLR 252
            A  +
Sbjct: 388 NARDK 392


>gi|147676386|ref|YP_001210601.1| DNA polymerase III, gamma/tau subunits [Pelotomaculum
           thermopropionicum SI]
 gi|146272483|dbj|BAF58232.1| DNA polymerase III, gamma/tau subunits [Pelotomaculum
           thermopropionicum SI]
          Length = 558

 Score = 62.4 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 58/277 (20%), Positives = 87/277 (31%), Gaps = 39/277 (14%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV-- 80
           RPRT  E  GQ      LK  +EA +         +F G  G GKTT A+V+A+ L    
Sbjct: 11  RPRTFGEIIGQEHITRTLKNAVEAGRVGHAY----IFCGARGTGKTTAAKVLAKALNCTG 66

Query: 81  -------------------------NFRSTSGPVIAKAGDLAALLT---NLEDRDVLFID 112
                                       + S   I +  DL   +          V  ID
Sbjct: 67  REGAEPCNRCESCRAVNEGISVDVIEIDAASNRGIDEIRDLREKIRFAPAAGRYRVYIID 126

Query: 113 EIHRLSIIVEEILYPAMED--FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           E+H L+      L   +E+      L++      R     LSR         +       
Sbjct: 127 EVHMLTSEAFNALLKTLEEPPRHAVLILATTEPHRVPLTILSRCQRFDFRRIIPADIIKR 186

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
                   RL   E E L+ I +        A++           + T     ++L  VR
Sbjct: 187 LKEVAAGARLEV-EEEALRLIARAAEGGLRDALSILDQAAAFGGMKVTEAGVHQILGTVR 245

Query: 231 DFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRY 267
             A    A  +    A  AL  ++  ++  +  DLR 
Sbjct: 246 TDALDRMAGCLAAGEAGRALRLVS--ELAGEGKDLRL 280


>gi|118383455|ref|XP_001024882.1| ATPase, AAA family protein [Tetrahymena thermophila]
 gi|89306649|gb|EAS04637.1| ATPase, AAA family protein [Tetrahymena thermophila SB210]
          Length = 476

 Score = 62.4 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 39/171 (22%), Positives = 65/171 (38%), Gaps = 15/171 (8%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTS---------GPVIAKAGDLAA 98
           K        VLF GPPG GKTT A+++A+++ +               G    K  DL  
Sbjct: 235 KQEPNRPKAVLFEGPPGTGKTTSAKIIAQQVSIPLIYMPLESIMSKYYGEAEKKFADLWE 294

Query: 99  LLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIA 158
               L  + ++FIDEI  ++   +  ++ A       L+        S  + L     + 
Sbjct: 295 ATKMLG-KSIIFIDEIDAIAGTRDSEMHEASRRILSTLLRKIDSFESSSDVLL-----VC 348

Query: 159 ATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAAC 209
           AT R   L   +  R  + I+    ++   + I +R AK        + A 
Sbjct: 349 ATNRKQDLDPAMLSRIDMSIKFEKPDVHSRQAIFKRYAKHLSEDQLRQLAE 399


>gi|332710811|ref|ZP_08430748.1| DNA polymerase III, subunits gamma and tau [Lyngbya majuscula 3L]
 gi|332350364|gb|EGJ29967.1| DNA polymerase III, subunits gamma and tau [Lyngbya majuscula 3L]
          Length = 763

 Score = 62.4 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 41/239 (17%), Positives = 72/239 (30%), Gaps = 55/239 (23%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +      RP+   +  GQ      L   IE+ +         LF GP G GKT+ A+++A
Sbjct: 4   EPLHHKYRPQRFADLVGQDAIAKTLTNAIESERIA----PAYLFTGPRGTGKTSSARILA 59

Query: 76  RELGV--------------------------NFRSTSGPVIAKAGDLAALLTNLE----- 104
           + L                            +             ++  ++   +     
Sbjct: 60  KSLNCLKTDLPTPFPCGECHVCREIAGGLSLDVTEMDAASHTGVDNIREIIERAQFAPVQ 119

Query: 105 -DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
               V  IDE H LS      L   +E+                     R   I ATT  
Sbjct: 120 CRYKVYVIDECHMLSTAAFNSLLKTLEE------------------PPERVVFILATTDP 161

Query: 164 GLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
             +   +  R           +E + + ++  A    + +T +A   +A  ++G  R A
Sbjct: 162 QRVLPTIISRCQ-RFDFRRIPLEAMVSHLKDIAVKENITITPDALTLVAQGAQGGLRDA 219


>gi|229015425|ref|ZP_04172428.1| DNA polymerase III subunit gamma/tau [Bacillus cereus AH1273]
 gi|229021630|ref|ZP_04178218.1| DNA polymerase III subunit gamma/tau [Bacillus cereus AH1272]
 gi|228739676|gb|EEL90084.1| DNA polymerase III subunit gamma/tau [Bacillus cereus AH1272]
 gi|228745867|gb|EEL95866.1| DNA polymerase III subunit gamma/tau [Bacillus cereus AH1273]
          Length = 562

 Score = 62.4 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 67/209 (32%), Gaps = 42/209 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+   +  GQ      L+  +       E + H  +F GP G GKTT+A+V A+ +   
Sbjct: 11  RPQKFGDVVGQKHVTKTLQNAL-----LQEKVSHAYVFSGPRGTGKTTIAKVFAKAINCE 65

Query: 82  F------------------------RSTSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                                ++  +   ++         V  I
Sbjct: 66  HAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVKYKVYII 125

Query: 112 DEIHRLSIIVEEILYPAMED--FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+H LS+     L   +E+    +  ++      +     +SR              N 
Sbjct: 126 DEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKIS---VND 182

Query: 170 LQDRFGIPIRLNFYEIEDLK-TIVQRGAK 197
           + +R    +     ++ED    IV R A+
Sbjct: 183 IVERLSTVVTNEGTQVEDEALQIVARAAE 211


>gi|284176150|ref|YP_003406427.1| Adenosinetriphosphatase [Haloterrigena turkmenica DSM 5511]
 gi|284017807|gb|ADB63754.1| Adenosinetriphosphatase [Haloterrigena turkmenica DSM 5511]
          Length = 739

 Score = 62.4 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 56/241 (23%), Positives = 92/241 (38%), Gaps = 25/241 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAA--------KARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           T E+  G  E    ++  IE          +   +    VL  GPPG GKT +A+ VA E
Sbjct: 215 TYEDIGGLDEELELVREMIELPLSEPELFRRLGVDPPSGVLLYGPPGTGKTLIARAVANE 274

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM 129
           +  NF + SGP I           L  +    E+    ++F DEI  ++   ++      
Sbjct: 275 VDANFETVSGPEIMSKYKGESEERLREVFERAEENAPTIIFFDEIDSIAGQRDDDGDAEN 334

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                 L + +G  AR          +I AT RV  +   L+   RF   I++   + E 
Sbjct: 335 RIVGQLLTLMDGLDAR------GEVIVIGATNRVDTIDPALRRGGRFDREIQIGVPDAEG 388

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            + I++   +   LA  D +   +A R+ G        +      A +    T + E A+
Sbjct: 389 RREILEVHTRGMPLA-DDVSVDALARRTHGFVGADLDSVVSEAAMAAIRGRPTESDERAE 447

Query: 248 A 248
            
Sbjct: 448 W 448



 Score = 47.4 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 52/254 (20%), Positives = 84/254 (33%), Gaps = 31/254 (12%)

Query: 20  SLLR------PRT-LEEFTGQVEACSNLKVFIE--------AAKARAEALDHVLFVGPPG 64
           S +R      P T   +  G  EA   L+  +E          +   +    VL  GPPG
Sbjct: 469 SAMREYVAESPNTDFADVGGLEEAKQLLRESVEWPLTYDRLFEETNTQPPSGVLLHGPPG 528

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHR 116
            GKT LA+ +A E  VNF    GP I           +  +          ++F DEI  
Sbjct: 529 TGKTLLARALAGETDVNFVRVDGPEIVDRYVGESEKAIREVFERARQSAPSIVFFDEIDA 588

Query: 117 LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RF 174
           ++    E     + +  +  ++ E    R          ++AAT R   +   L    R 
Sbjct: 589 ITSARGEG--NEVTERVVSQLLTELDGMREN----PNLVVLAATNRKDQIDPALLRPGRL 642

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
              + +   + +  + I+    +   LA   + A         T      L+R     A 
Sbjct: 643 DTHVFVGEPDRKAREKILAVHTRGKPLADDVDVAELAGELEGYTGADLEALVRTASMQAI 702

Query: 235 VAHAKTITREIADA 248
              A     E A+ 
Sbjct: 703 REVAGQYDPEDANE 716


>gi|240103746|ref|YP_002960055.1| AAA family ATPase, CDC48 subfamily (Cdc48) [Thermococcus
           gammatolerans EJ3]
 gi|239911300|gb|ACS34191.1| AAA family ATPase, CDC48 subfamily (Cdc48) [Thermococcus
           gammatolerans EJ3]
          Length = 796

 Score = 62.4 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 60/268 (22%), Positives = 98/268 (36%), Gaps = 32/268 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
           T E+  G  +    ++  IE      E            VL  GPPG GKT LA+ VA E
Sbjct: 180 TYEDIGGLKDVIQKVREMIELPLKHPEIFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANE 239

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM 129
              +F + +GP I           L  +    E+    ++FIDEI  ++   EE      
Sbjct: 240 ANAHFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKREE-----T 294

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                  +V +  +      +  +  +IAAT R   +   L+   RF   + +   + + 
Sbjct: 295 HGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDAIDPALRRPGRFDRELEVGVPDKQG 354

Query: 188 LKTIVQRGAKLTGL--AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
            K I+Q   +   +      +   EI  + RG  R      R V D A     K    E 
Sbjct: 355 RKEILQIHTRGMPIEPDFRRDKVIEILEKLRGDERF-----RDVIDRAIEKVEKAKDEEE 409

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIAR 273
               L    +D+  +D++  R +  +  
Sbjct: 410 IKRDL--RELDERLYDEVKARLIDALLE 435



 Score = 54.3 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 46/209 (22%), Positives = 76/209 (36%), Gaps = 24/209 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVARE 77
             ++  G  +    L+  +E      EA           +L  GPPG GKT LA+ VA E
Sbjct: 515 RWDDIGGLEDVKQELREAVEWPLKYPEAFMGLGITPPKGILLYGPPGTGKTLLAKAVANE 574

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAM 129
              NF +  GP +          ++  +          V+FIDEI  ++      +    
Sbjct: 575 SEANFIAIKGPEVLSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRGTDV---- 630

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            +   D ++ +  +        S   +I AT R  +L   L    RF   I +   + + 
Sbjct: 631 -NRVTDRLINQLLTEMDGIQENSGVVVIGATNRPDILDPALLRPGRFDRLILVPAPDEKA 689

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSR 216
              I +   +   LA  D    E+A R+ 
Sbjct: 690 RLEIFKVHTRKVPLA-EDVNLEELAKRTE 717


>gi|156937725|ref|YP_001435521.1| ATPase [Ignicoccus hospitalis KIN4/I]
 gi|156566709|gb|ABU82114.1| AAA ATPase, central domain protein [Ignicoccus hospitalis KIN4/I]
          Length = 516

 Score = 62.4 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 52/245 (21%), Positives = 89/245 (36%), Gaps = 27/245 (11%)

Query: 26  TLEEFTGQVEACSNLKVFI--EAAKARAEALDHVLFVGPPGLGKTTLAQVVAR------- 76
           +L++F    E    L+  +        A A   +L VGPPG+GKT L + VA        
Sbjct: 255 SLDDF--PEELGEELRTLVIDPITNKMAFAPKGMLLVGPPGVGKTILVEAVAGGLGRKLL 312

Query: 77  --ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
             E G+      G       ++   ++  +D  V+ ID+   L     +      E +  
Sbjct: 313 ELEPGMYRSMWYGQTEKILKEIFNAVSKRKDEVVVLIDDAEFL----MDRGLAVHEGY-- 366

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIV 192
              V E      +  N  R  +   T    LL   L    R  + + + + + E  + IV
Sbjct: 367 ---VSEMNVFLKLLQNRERPLIAMTTNHPQLLDQALVRPGRVDLAVIVGYPDKEFRRKIV 423

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           +R AK   L + +    ++   +R     +   +  +   A       IT E  + A  R
Sbjct: 424 ERAAKRYELKMDEHLIEKVVRVTRW---FSNAEIDSLIRMAAAKGKGKITEESVEWARRR 480

Query: 253 LAIDK 257
             ID+
Sbjct: 481 FHIDE 485


>gi|253990862|ref|YP_003042218.1| DNA polymerase III subunits gamma and tau [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|211639197|emb|CAR67810.1| DNA polymerase III subunit [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253782312|emb|CAQ85476.1| DNA polymerase III subunit [Photorhabdus asymbiotica]
          Length = 658

 Score = 62.4 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 62/309 (20%), Positives = 103/309 (33%), Gaps = 37/309 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+      GQ    + L     A     + L H  LF G  G+GKTT+A++ ++ L   
Sbjct: 11  RPQIFSNVIGQEHVLTAL-----ANGLAHDRLHHAYLFSGTRGVGKTTIARLFSKGLNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILY------PAMEDFQ 133
              T  P     G  A  L   + R  D++ ID   R  +     L       P    F+
Sbjct: 66  IGITDKP----CGKCANCLEIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPTRGRFK 121

Query: 134 LDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           + L+               ++++        + ATT    L   +  R  +   L   ++
Sbjct: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDV 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
             +   ++R  K   L     A   +A  + G+ R A  L     D A       +T EI
Sbjct: 181 AQISDQLERILKAEHLESDSRARQLLARAADGSMRDALSL----ADQAIAMGQGQVTAEI 236

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
               L  L       D+  L  +  + R  G   + +    A      + +       + 
Sbjct: 237 VSQMLGTLD------DEQPLSIIEALVRADGRQVMALVEQVALRGTDWENLLVETLSLLH 290

Query: 306 QQGFIQRTP 314
           +   IQ  P
Sbjct: 291 RIAMIQLLP 299


>gi|213403013|ref|XP_002172279.1| replication factor C subunit 2 [Schizosaccharomyces japonicus
           yFS275]
 gi|212000326|gb|EEB05986.1| replication factor C subunit 2 [Schizosaccharomyces japonicus
           yFS275]
          Length = 340

 Score = 62.4 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 42/238 (17%), Positives = 75/238 (31%), Gaps = 44/238 (18%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP++L+E + Q      LK         +  L H+LF G PG GKT+    +AR
Sbjct: 21  PWVEHYRPKSLDEVSSQDMTIQVLKK-----TMMSNNLPHMLFYGSPGTGKTSTILALAR 75

Query: 77  E------LGVNFRSTSGPVIAKAGDLAALLTNLED--------------RDVLFIDEIHR 116
           E      +       +         +   + N                   ++ +DE   
Sbjct: 76  ELFGPQLVKSRVLELNASDERGISIIREKVKNFARIAVNNTVNGYPCPPFKIVILDEADS 135

Query: 117 LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
           ++   +  L   ME            +AR  +  L           V  + +PL  R   
Sbjct: 136 MTQDAQAALRRTME-----------ATARITRFCL-------VCNYVTRIIDPLASRCS- 176

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
             R    + +D+   ++  A    +A+       +   S G  R A   L+      +
Sbjct: 177 KYRFKPLDAQDIAKRLEFIAADQTVALEPGVIDALVSVSGGDMRKAITFLQSAATLHQ 234


>gi|91086165|ref|XP_970259.1| PREDICTED: similar to GA17483-PA [Tribolium castaneum]
 gi|270009883|gb|EFA06331.1| hypothetical protein TcasGA2_TC009202 [Tribolium castaneum]
          Length = 716

 Score = 62.4 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 54/245 (22%), Positives = 94/245 (38%), Gaps = 24/245 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  EA   LK  +E  K          +    VL VGPPG GKT LA+ VA E 
Sbjct: 273 TFDDVKGADEAKQELKDVVEFLKNPDKFSQLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 332

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F   +GP          A  +  L  + +++   V+FIDEI  +       +     
Sbjct: 333 GVPFFHAAGPEFDEILVGQGARRVRDLFKSAKEKAPCVIFIDEIDSVGAKRTNSVLHPYA 392

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
           +  ++ ++ E       +       ++ AT R   L   L    RF + + +   +    
Sbjct: 393 NQTINQLLSEMDGFHQNEG----VIVLGATNRRDDLDQALLRPGRFDVEVTVPTPDFTGR 448

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAM-RSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           K I+  G  L  +   D     +A   +  T      ++ +    A +  A  ++ +  +
Sbjct: 449 KEIL--GLYLGKVLAKDVDLELLARGTTGFTGADLENMVNQAALKAAIDGADCVSMKYLE 506

Query: 248 AALLR 252
           +A  +
Sbjct: 507 SARDK 511


>gi|312383183|gb|EFR28367.1| hypothetical protein AND_03849 [Anopheles darlingi]
          Length = 648

 Score = 62.4 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 55/326 (16%), Positives = 108/326 (33%), Gaps = 65/326 (19%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI  ++ +      +L F GPPG+GKT++A+ +A+ L   +   S
Sbjct: 182 EDHYGMEDIKKRILEFIAVSQLKGTTQGKILCFHGPPGVGKTSIARSIAKALNREYFRFS 241

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ ++    +        
Sbjct: 242 VGGMTDVAEIKGHRRTYVGAMPGKLIQCLKKTKTENPLVLIDEVDKIGRGYQGDPSSALL 301

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V ++LS+   I     +  +  PL+DR  +     +
Sbjct: 302 ELLDPEQNVNFLD-------HYLDVPVDLSKILFICTANVIDTIPEPLRDRMEMIDMSGY 354

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
              E L       AK   +      +         T      L+R     + V + +   
Sbjct: 355 VAEEKLA-----IAKQYLIPQAKRDSGVEDKHITITDDALNALIRSYCRESGVRNLQKQI 409

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            +I      ++   +  F +                 V  + +S  L +P    + + E 
Sbjct: 410 EKIVRKVAFKVVRKEADFTE-----------------VSADNLSDLLGKPIFTHDRMYET 452

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLG 328
                     TP G ++M +AW  +G
Sbjct: 453 ----------TPPG-VVMGLAWTAMG 467


>gi|295107774|emb|CBL21727.1| ATP-dependent metalloprotease FtsH [Ruminococcus obeum A2-162]
          Length = 630

 Score = 62.4 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 58/234 (24%), Positives = 91/234 (38%), Gaps = 28/234 (11%)

Query: 26  TLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G+ EA  NL+  +       +  K  A     VL VGPPG GKT LA+ VA E 
Sbjct: 164 RFSDVAGEEEAKENLQEIVDYLHNPEKYTKVGASMPKGVLLVGPPGTGKTMLAKAVAGES 223

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG           A  +  L    +++   ++FIDEI  +    +  +    +
Sbjct: 224 NVPFFSMSGSEFVEMFVGMGASKVRDLFKQAKEKAPCIVFIDEIDAIGKKRDGQMAGGND 283

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E               ++AAT R   L   L    RF   + +   ++E
Sbjct: 284 EREQTLNQLLTEMDGFEGNNG----VIILAATNRPESLDPALTRPGRFDRRVPVELPDLE 339

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL-----LRRVRDFAEV 235
             + I++  AK   L+   +      M S  +      +     LR VRD  EV
Sbjct: 340 GREAILKVHAKKVQLSDDVDFHTIARMASGASGAELANIVNEAALRAVRDNREV 393


>gi|294787157|ref|ZP_06752410.1| DNA polymerase III, subunits gamma and tau [Parascardovia
           denticolens F0305]
 gi|315227307|ref|ZP_07869094.1| DNA polymerase III, gamma/tau subunit DnaX [Parascardovia
           denticolens DSM 10105]
 gi|294484513|gb|EFG32148.1| DNA polymerase III, subunits gamma and tau [Parascardovia
           denticolens F0305]
 gi|315119757|gb|EFT82890.1| DNA polymerase III, gamma/tau subunit DnaX [Parascardovia
           denticolens DSM 10105]
          Length = 900

 Score = 62.4 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 55/282 (19%), Positives = 94/282 (33%), Gaps = 28/282 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     RP T +   GQ +    LK  ++  K     L H  LF GP G GKT+ A+++A
Sbjct: 4   ALYRRYRPDTFDGVVGQEQVTIPLKRALDEGK-----LTHAYLFSGPRGCGKTSSARILA 58

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDR-DVLFIDEIHRLSIIVEEILY------PA 128
           R +      TS P   +      L TN     DV+ +D      +     L       PA
Sbjct: 59  RCVNCVKGPTSHP-CGECDSCRDLATNGPGSIDVIEVDAASHNGVEDARELRDRAGFAPA 117

Query: 129 MEDFQLDLMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            + +++ ++         G     + V+        I ATT    +   ++ R       
Sbjct: 118 RDRYKIFILDEAHMVTQQGFNALLKIVEEPPEHVMFIFATTEPDKVIGTIRSR-THHYPF 176

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV----RDFAEVA 236
                E +   ++   K   +               G+ R    +L ++     D     
Sbjct: 177 RLVPPEVMGPYLEGICKQEKIQPQPGVLKLAMRTGGGSVRDTLSVLDQLMVGSVDGTISY 236

Query: 237 HAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
            +          AL+  A+D +  D    +   +I +   GG
Sbjct: 237 DSAVTLLGYTPDALISEAVDAV-IDHDGEKLYRVIEKIVIGG 277


>gi|169830250|ref|YP_001716232.1| DNA polymerase III subunits gamma and tau [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169637094|gb|ACA58600.1| DNA polymerase III, subunits gamma and tau [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 447

 Score = 62.4 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 50/172 (29%), Gaps = 36/172 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+   E  GQ      L+  + A +         LF GP G GKTT A+V+A+ +    
Sbjct: 11  RPQRFGEIVGQDHVVRTLQNAVRAERVAHAY----LFCGPRGTGKTTAAKVLAKAVNCTE 66

Query: 83  R------------------------STSGPVIAKAGDLAALLTN------LEDRDVLFID 112
           R                                   ++  L              V  ID
Sbjct: 67  RDGAEPCGECASCVSIGTGSAVDVLEIDAASNRGVDEVRELRERVKFHPAAGRFKVYIID 126

Query: 113 EIHRLSIIVEEILYPAMED--FQLDLMVGEGPSARSVKINLSRFTLIAATTR 162
           E+H L+      L   +E+    +  ++      +     +SR         
Sbjct: 127 EVHMLTNEAFNALLKTLEEPPPHVIFVLATTEPHKVPLTIISRCQRFDFRRI 178


>gi|118602478|ref|YP_903693.1| DNA polymerase III, subunits gamma and tau [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
 gi|118567417|gb|ABL02222.1| DNA polymerase III, subunits gamma and tau [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
          Length = 529

 Score = 62.4 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 49/270 (18%), Positives = 84/270 (31%), Gaps = 59/270 (21%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH-VLFVGPPGLGKTTLAQVVARE 77
               RP +  +  GQ      L   ++A       L H  LF G  G+GKTT+A+++A+ 
Sbjct: 9   ARKYRPHSFVKLVGQTHTKKTLINALDA-----NNLHHGFLFTGTRGVGKTTIARILAKS 63

Query: 78  LGVNFRSTS------------------------GPVIAKAGDLAALLTNLE------DRD 107
           +      +S                                ++  +L N +         
Sbjct: 64  INCEQGISSKPCDKCATCVEIDKGQSIDLIELDAASHTGVDNMRDILENAQYMPSKNRYK 123

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           +  IDE+H LS      L   +E+                         +  TT    L 
Sbjct: 124 IYLIDEVHMLSKNSFNALLKTLEE------------------PPEHVKFLLVTTDPQKLP 165

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             +  R  +   L     +++   ++       L+  + A  +IA    G+ R A  LL 
Sbjct: 166 VTVLSRC-LQFTLQQLTHDEILEQLKFIMNAEVLSYEESALGQIADFGNGSMRDALSLL- 223

Query: 228 RVRDFAEVAHAKTITREIADAALLRLAIDK 257
              D +      T+T     A L  +  D 
Sbjct: 224 ---DQSISYGKGTVTNADIKAMLGLVHHDD 250


>gi|328866222|gb|EGG14607.1| replication factor C subunit [Dictyostelium fasciculatum]
          Length = 325

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 74/226 (32%), Gaps = 38/226 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP  +++  G  E  S L+     + A    L +++  GPPG GKTT    +A+
Sbjct: 7   PWVEKYRPSQIKDIVGNEETVSRLQ-----SIAIDGNLPNIIISGPPGTGKTTSILCLAQ 61

Query: 77  ------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIHRLSIIVE 122
                       EL  +       V  K    AA    L      ++ +DE   ++   +
Sbjct: 62  ALLGPAYKEAVYELNASDERKLEVVRDKIKKFAAKKVTLPPGRHKIIILDEADSMTAGAQ 121

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           + L                   R ++IN +      A  +   +  P+Q R  +      
Sbjct: 122 QALR------------------RIMEINSATTRFALACNQSTKIIEPIQSRCAVLRYTRL 163

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
              E +   ++    +  +   +     +   + G  R A   L+ 
Sbjct: 164 -SDEQILKRLKEVMTIENVPYHENGLEALLHTADGDMRQALNNLQA 208


>gi|307110220|gb|EFN58456.1| hypothetical protein CHLNCDRAFT_48527 [Chlorella variabilis]
          Length = 293

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 39/174 (22%), Positives = 60/174 (34%), Gaps = 27/174 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RPR++ E   Q E    L+  + +       L H+LF GPPG GKTT A  + R
Sbjct: 5   PWVEKYRPRSIGEVAHQEEVVQTLQHALSSG-----NLPHLLFYGPPGTGKTTSALAIVR 59

Query: 77  -------------ELGVNFRSTSGPVIAKAGDLAALLTNLE-------DRDVLFIDEIHR 116
                        EL  +     G V  K  + AA                V+ +DE   
Sbjct: 60  QLFGPELCKARVLELNASDERGIGVVRDKIKNFAANSVGQGVAGYPCPPFKVIILDEADS 119

Query: 117 LSIIVEEILYPAMEDFQLD--LMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           ++   +  L   ME +      +      +R ++   SR          G + N
Sbjct: 120 MTGDAQNALRRTMETYSRVTRFVFICNYVSRIIEPLASRCAKFRFKPLQGDVIN 173


>gi|332361887|gb|EGJ39690.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
           SK355]
          Length = 556

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 48/271 (17%), Positives = 83/271 (30%), Gaps = 55/271 (20%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     R +T  +  GQ    + L+  +E      E + H  LF GP G GKT++A++ A
Sbjct: 4   ALYRKYRSQTFGQLVGQQVVATTLRQAVE-----QEKISHAYLFSGPRGTGKTSVAKIFA 58

Query: 76  RELGVNFR------------------------STSGPVIAKAGDLAALLTN------LED 105
           + +    +                                   ++  +         L  
Sbjct: 59  KAMNCPNQKDGEPCNDCYICQAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLAK 118

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
             V  IDE+H LS      L   +E+                         I ATT +  
Sbjct: 119 HKVYIIDEVHMLSTGAFNALLKTLEEPT------------------ENVVFILATTELHK 160

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           +   +  R       +    + +  I +   +  G+    E    IA R+ G  R A  +
Sbjct: 161 IPATILSRVQRFEFKSIKTQDIIGHI-EWILEQEGIDFEQEGVQIIARRAEGGMRDALSI 219

Query: 226 LRRVRDFAEVAHAKTITREIADAALLRLAID 256
           L +     +     T   E    ++   A+D
Sbjct: 220 LDQALSLTQENRLTTDIAEEITGSISLGALD 250


>gi|326566454|gb|EGE16604.1| DNA polymerase III gamma and tau subunit [Moraxella catarrhalis
           BC1]
          Length = 748

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 50/234 (21%), Positives = 80/234 (34%), Gaps = 23/234 (9%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQ 72
           Q        RP+   E  GQ      L   I+  +     L H  LF G  G+GKTT+A+
Sbjct: 4   QYQVLARKYRPKNFSELLGQSHVAQALSNAIDTGR-----LHHAYLFTGTRGVGKTTIAR 58

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL-----YP 127
           ++A+ L      TS P      D    +      D++ ID   R  +     L     YP
Sbjct: 59  ILAKCLNCETGMTSQP--CGVCDTCISIDQGRFLDLIEIDAASRTKVEDTRELLENVPYP 116

Query: 128 AMEDFQLDLMVGEGPS--ARSVKINLS-------RFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++      ++ E       S    L            + ATT    L   +  R  +  
Sbjct: 117 PVQGRYKVYLIDEVHMLSTHSFNALLKTLEEPPDYVKFVFATTDPQKLPITIISRC-LQF 175

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
            L       L   + +      +  T+ A  ++A  ++G+ R A  L  +   F
Sbjct: 176 VLRPLPQACLSDHLAKVLDAEKIPFTENALWQLASAAKGSVRDALSLTDQAIAF 229


>gi|326562873|gb|EGE13160.1| DNA polymerase III gamma and tau subunit [Moraxella catarrhalis
           46P47B1]
 gi|326570998|gb|EGE21022.1| DNA polymerase III gamma and tau subunit [Moraxella catarrhalis
           BC7]
          Length = 748

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 50/234 (21%), Positives = 80/234 (34%), Gaps = 23/234 (9%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQ 72
           Q        RP+   E  GQ      L   I+  +     L H  LF G  G+GKTT+A+
Sbjct: 4   QYQVLARKYRPKNFSELLGQSHVAQALSNAIDTGR-----LHHAYLFTGTRGVGKTTIAR 58

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL-----YP 127
           ++A+ L      TS P      D    +      D++ ID   R  +     L     YP
Sbjct: 59  ILAKCLNCETGMTSQP--CGVCDTCISIDQGRFLDLIEIDAASRTKVEDTRELLENVPYP 116

Query: 128 AMEDFQLDLMVGEGPS--ARSVKINLS-------RFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++      ++ E       S    L            + ATT    L   +  R  +  
Sbjct: 117 PVQGRYKVYLIDEVHMLSTHSFNALLKTLEEPPDYVKFVFATTDPQKLPITIISRC-LQF 175

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
            L       L   + +      +  T+ A  ++A  ++G+ R A  L  +   F
Sbjct: 176 VLRPLPQACLSDHLAKVLDAEKIPFTENALWQLASTAKGSVRDALSLTDQAIAF 229


>gi|322493650|emb|CBZ28940.1| putative replication factor C, subunit 2 [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 354

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 53/249 (21%), Positives = 78/249 (31%), Gaps = 51/249 (20%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           S         +   RPRTL E   Q EA   L+    A       + H LF GPPG GKT
Sbjct: 18  SDTAGAAAPWVEKYRPRTLAEVEAQDEAVGALR----ACLKEGANMPHFLFHGPPGTGKT 73

Query: 69  TLAQVVA-------------RELGVNFRSTSGPVIAKAGDLAALLTNLE----------- 104
           T    VA             REL  +       V  K    A    +             
Sbjct: 74  TSILAVAHELFGPDYIRSRVRELNASDDRGINVVREKVKIFAQGAVSSSGSSVTQSDGKV 133

Query: 105 ----DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAAT 160
                  ++ +DE   L    +  L   MEDF                 +++RF      
Sbjct: 134 YPVPPFKLIILDEADALLPDAQAALRRMMEDFS----------------DVTRF--CILC 175

Query: 161 TRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPR 220
             V  + +P+  R     R        L   ++  A+  G+ ++  +   +   S G  R
Sbjct: 176 NYVSRIIDPIASRCA-KYRFKPLVKSALYHRIEYVAQAEGITLSPASLHALDTVSGGDLR 234

Query: 221 IAGRLLRRV 229
           +A   L+  
Sbjct: 235 LAIMHLQSA 243


>gi|284165841|ref|YP_003404120.1| ATPase AAA [Haloterrigena turkmenica DSM 5511]
 gi|284015496|gb|ADB61447.1| AAA family ATPase, CDC48 subfamily [Haloterrigena turkmenica DSM
           5511]
          Length = 754

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 61/265 (23%), Positives = 101/265 (38%), Gaps = 40/265 (15%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
           T E+  G  +    ++  IE      E            VL  GPPG GKT +A+ VA E
Sbjct: 189 TYEDIGGLDDELDQVREMIELPMRHPELFQQLGIEPPKGVLLHGPPGTGKTLMAKAVANE 248

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM 129
           +  +F + SGP I           L  +    E+    ++FIDE+  ++   E+      
Sbjct: 249 IDAHFETISGPEIMSKYYGESEEQLREVFEEAEENAPAIIFIDELDSIAAKRED-----A 303

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                  +V +  S         R T+IAAT RV  +   L+   RF   I +   + + 
Sbjct: 304 GGDVERRVVAQLLSLMDGLEERGRVTVIAATNRVDDIDPALRRGGRFDREIEIGVPDKDG 363

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            K I+Q    +    +  + + ++   +  T    G  L             ++ RE A 
Sbjct: 364 RKEILQ----VHTRGMPLQESIDLDQYAENTHGFVGADLE------------SLVREGAM 407

Query: 248 AALLRLAID-KMGFDQLDLRYLTMI 271
            AL R+  D  +  D++D   L  +
Sbjct: 408 NALRRIRPDLDLEEDEIDAEILETL 432



 Score = 47.4 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/146 (25%), Positives = 55/146 (37%), Gaps = 30/146 (20%)

Query: 2   MDREGLLSRNVSQEDADI-------SLLR------PR-TLEEFTGQVEACSNLKVFIEAA 47
           +D E L +  V+++D          S +R      P  T ++  G  +    L+  ++  
Sbjct: 424 IDAEILETLEVTEDDFKDAIKGIQPSAMREVFVEIPDVTWDDVGGLEDTKERLRENVQWP 483

Query: 48  KARAEALD--------HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKA 93
               E  D         VL  GPPG GKT LA+ VA E   NF S  GP +         
Sbjct: 484 LDYPEVFDELDMQAAKGVLMYGPPGTGKTLLAKAVANEAQSNFISIKGPELLNKYVGESE 543

Query: 94  GDLAALLTNLEDR--DVLFIDEIHRL 117
             +  +          V+F DEI  +
Sbjct: 544 KGVREVFEKARSNAPTVIFFDEIDSI 569


>gi|240948992|ref|ZP_04753346.1| DNA polymerase III subunits gamma and tau [Actinobacillus minor
           NM305]
 gi|240296579|gb|EER47197.1| DNA polymerase III subunits gamma and tau [Actinobacillus minor
           NM305]
          Length = 698

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 55/310 (17%), Positives = 93/310 (30%), Gaps = 64/310 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+   E  GQ    S L+  +   +     L H  LF G  G+GKT++A++ A+ L   
Sbjct: 11  RPQRFSEVVGQQHVLSALENGLREGR-----LHHAYLFSGTRGVGKTSIARLFAKGLNCE 65

Query: 82  F------------------------RSTSGPVIAKAGDLAALLTNLEDRD------VLFI 111
                                             K  D   LL N++ +       V  I
Sbjct: 66  TGITATPCGECANCKAIEEGRFIDLIEIDAASRTKVEDTRELLDNVQYKPTVGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSRHSFNALLKTLEE------------------PPEYVKFLLATTDPQKLPITIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L   +   +   ++   K   +     A  ++A  + G+ R +  L     D
Sbjct: 168 SRC-MQFHLRALDQTQIAHHLEFILKAEQIPYETAAIEKLAKAAEGSIRDSLSL----TD 222

Query: 232 FAEVAHAKTITREIADAALLRLAIDK-----MGFDQLDLRYLTMIARNFGGGPVGIETIS 286
            A       +T       L  +   +     M     D   +  + +N     V    + 
Sbjct: 223 QAIAVTNANVTLSAVSQMLGLIDDHQPLELIMALANADGEKVMAVIQNVAEKGVDWNQLL 282

Query: 287 AGLSEPRDAI 296
             ++E    I
Sbjct: 283 NDVAEVLHQI 292


>gi|254568858|ref|XP_002491539.1| Subunit of heteropentameric Replication factor C (RF-C) [Pichia
           pastoris GS115]
 gi|238031336|emb|CAY69259.1| Subunit of heteropentameric Replication factor C (RF-C) [Pichia
           pastoris GS115]
 gi|328351952|emb|CCA38351.1| Replication factor C subunit 2 [Pichia pastoris CBS 7435]
          Length = 324

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 76/222 (34%), Gaps = 20/222 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+ L+E + Q      L   +++A      + H+LF GPPG GKT+    +AR
Sbjct: 4   PWVEKYRPKKLDEVSAQSNVIRVLSNQLKSA-----NMPHLLFYGPPGTGKTSTILAMAR 58

Query: 77  E------LGVNFRSTSGPVIAKAGDLAALLTNLEDRDV---LFIDEIHRLSIIVEEILYP 127
           E      +       +         +   + N     V      D+ +      + I+  
Sbjct: 59  ELFGPQLMKSRVLELNASDERGISIVRDKVKNFARLSVTNPTPEDKENYPCPPYKLIILD 118

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFT-LIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
             +    D       + R +  N S  T        +  + +P+  R             
Sbjct: 119 EADSMTFD----AQSALRRIMENYSHITRFCIICNYITRIIDPITSRCSKFRFSPLNSAN 174

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            L T ++  ++   L + D++  +I   S G  R +   L+ 
Sbjct: 175 SLAT-LKMISQSEELDIDDDSLTQILDISNGDLRKSINFLQT 215


>gi|209694644|ref|YP_002262572.1| DNA polymerase III subunits gamma and tau [Aliivibrio salmonicida
           LFI1238]
 gi|208008595|emb|CAQ78770.1| DNA polymerase III subunit tau [Aliivibrio salmonicida LFI1238]
          Length = 714

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 58/279 (20%), Positives = 86/279 (30%), Gaps = 63/279 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP   ++  GQ    + L    E A          LF G  G+GKTT+A++ A+ L    
Sbjct: 11  RPHHFKDVVGQSHVLTAL----ENALDHNRLHHAYLFSGTRGVGKTTIARLFAKGLNCEE 66

Query: 83  RSTS------------------------GPVIAKAGDLAALLTNLEDRD------VLFID 112
             TS                             K  D   LL N++ +       V  ID
Sbjct: 67  GITSTPCGVCSTCKEIDEGRFVDLLEIDAASRTKVEDTRDLLDNVQYKPARGRFKVYLID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS      L   +E+                         I ATT    L   +  
Sbjct: 127 EVHMLSRHSFNALLKTLEE------------------PPEYVKFILATTDPQKLPVTILS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R  +   L    ++ +   +        ++    A   IA  + G+ R A  L     D 
Sbjct: 169 RC-LQFHLKHISVDQIHAQLDLVLDKEEVSKDGRALGLIAHAADGSMRDALSL----TDQ 223

Query: 233 AEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMI 271
           A       +T +I    L  L  D+       +R L  I
Sbjct: 224 AIALGNGNVTADIVSMMLGTLDTDQA------IRILEAI 256


>gi|70993660|ref|XP_751677.1| intermembrane space AAA protease IAP-1 [Aspergillus fumigatus
           Af293]
 gi|66849311|gb|EAL89639.1| intermembrane space AAA protease IAP-1 [Aspergillus fumigatus
           Af293]
 gi|159125401|gb|EDP50518.1| intermembrane space AAA protease IAP-1 [Aspergillus fumigatus
           A1163]
          Length = 799

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 57/250 (22%), Positives = 94/250 (37%), Gaps = 26/250 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G  EA   L+  +E        +    +    VL VGPPG GKT LA+ VA E 
Sbjct: 329 RFSDVHGCDEAKEELQELVEFLLNPERFSSLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 388

Query: 79  GVNFRSTSGPVIA------KAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F   SG           A  +  L      +   ++FIDE+  +     E    A  
Sbjct: 389 GVPFFYMSGSEFDEVYVGVGAKRVRELFAQARSKSPAIIFIDELDAIGAKRNER-DAAYV 447

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
              L+ ++ E           S   +IAAT    LL   L    RF   + ++  ++   
Sbjct: 448 KQTLNQLLTELDGFSQT----SGVIIIAATNFPQLLDKALTRPGRFDRKVVVDLPDVRGR 503

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             I++   K   ++       ++A+ +RGTP  +G  L  + + A +  ++    ++   
Sbjct: 504 MDILKHHLKNIKISTD----VDVAVLARGTPGFSGADLENLVNQAAIYASRNKKPKVGPK 559

Query: 249 ALLRLAIDKM 258
            L       M
Sbjct: 560 DLDWAKDKIM 569


>gi|317498613|ref|ZP_07956906.1| DNA polymerase III [Lachnospiraceae bacterium 5_1_63FAA]
 gi|291558496|emb|CBL37296.1| DNA polymerase III, subunits gamma and tau [butyrate-producing
           bacterium SSC/2]
 gi|316894100|gb|EFV16289.1| DNA polymerase III [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 534

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 79/231 (34%), Gaps = 23/231 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     RP    E  GQ      L+      + R   + H  LF G  G GKTT+A+++A
Sbjct: 5   ALYRKFRPTRFSEVKGQDHIVKTLEN-----QMRTGRIGHAYLFCGTRGTGKTTVAKILA 59

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAME 130
           + +         P      ++   +      +V+ ID      +  +  I E++ Y    
Sbjct: 60  KAVNCEHPVDGEP--CGECEVCKAIAEGSSMNVIEIDAASNNGVDNIREIKEQVQYSPAT 117

Query: 131 DFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
                 ++ E             ++++        I ATT V  +   +  R       +
Sbjct: 118 GKYKVYIIDEVHMLSIGAFNALLKTLEEPPEYVIFILATTEVHKIPITILSRCQ-RYDFH 176

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
                 +K  +    +   +   D+A   +A  + G+ R A  LL +   F
Sbjct: 177 RITAATIKKQLSDLMEQEHVDTEDKALEYVARMADGSMRDALSLLDQCIAF 227


>gi|251777715|ref|ZP_04820635.1| ATP-dependent metallopeptidase HflB [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243082030|gb|EES47920.1| ATP-dependent metallopeptidase HflB [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 698

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 66/259 (25%), Positives = 105/259 (40%), Gaps = 27/259 (10%)

Query: 26  TLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ EA  +LK  I          +  A+     L VGPPG GKT +A+ VA E 
Sbjct: 168 TFDDVAGQEEAKESLKEVIDFLNCPKRYTEIGAKLPKGALLVGPPGTGKTLIAKAVAGEA 227

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  L      +   ++FIDEI  +    +  +    E
Sbjct: 228 KVPFFSLSGSSFVEMFVGVGASRVRELFKEAVTKAPCIIFIDEIDAIGKSRDNQMQSNDE 287

Query: 131 -DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            +  L+ ++ E     S K       ++AAT R  +L   L    RF   + ++  + + 
Sbjct: 288 REQTLNQLLSEMDGFDSSKG----IVILAATNRPEILDKALLRPGRFDRRVIVDRPDFKG 343

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            + I++  AK   L   D    EIA   +GTP   G  L  + + A +   K   + +  
Sbjct: 344 REAILRVHAKNVNL-GDDVDLDEIA---KGTPGAVGADLANIVNEAALRAVKNRRKLVLQ 399

Query: 248 AAL-LRLAIDKMGFDQLDL 265
             L   + +   G ++ D 
Sbjct: 400 EDLRDAVEVIIAGKEKKDR 418


>gi|327282022|ref|XP_003225743.1| PREDICTED: replication factor C subunit 4-like [Anolis
           carolinensis]
          Length = 364

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 71/219 (32%), Gaps = 15/219 (6%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+ ++E   Q E  + LK  ++ A      L ++LF GPPG GKT+     AR
Sbjct: 40  PWVEKYRPKCMDEVAFQEEVVAVLKKCLQGAD-----LPNLLFYGPPGTGKTSTILAAAR 94

Query: 77  E------LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           E              +         +   +       V       +L    + ++    +
Sbjct: 95  ELFGTELFRQRVLELNASDERGIQVIREKVKRFAQLTVSGSRSDGKLCPPFKIVILDEAD 154

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
                    +    R+++              +  +  P+  R     R      +  + 
Sbjct: 155 SMT---SAAQAALRRTMEKESKTTRFCLICNYISRIIEPITSRCS-KFRFKPLSDKIQRQ 210

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
            +   A+   +AV+ EA   +   S G  R A  LL+  
Sbjct: 211 RLVEVAEKENVAVSSEAISYLVHVSEGDLRKAITLLQSA 249


>gi|225444466|ref|XP_002267342.1| PREDICTED: hypothetical protein, partial [Vitis vinifera]
          Length = 660

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 48/196 (24%), Positives = 79/196 (40%), Gaps = 21/196 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALL-------TNLEDRD 107
           VLF GPPG GKT+ A+V+A + GV         I     G+   LL           +  
Sbjct: 425 VLFEGPPGTGKTSCARVIANQAGVPLVYLPLESIMSKYYGESERLLGKVFVHANEFPEGA 484

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           ++F+DE+   ++     ++ A     L +++ +       K    +  +IAAT R   L 
Sbjct: 485 IVFLDEVDSFAVSRSREMHEATRRI-LSVILRQIDGFEQDK----KVVVIAATNRKQDLD 539

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             L  RF   I     +  D + I  + AK    +       E+   +  T  ++GR +R
Sbjct: 540 PALMSRFDSMITFGLPDNHDRQKIAAQFAKHLTES-------ELVEFATATEGMSGRDIR 592

Query: 228 RVRDFAEVAHAKTITR 243
            +   AE   A  + R
Sbjct: 593 DICQQAERHWASKVIR 608


>gi|225557253|gb|EEH05539.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
          Length = 424

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 74/218 (33%), Gaps = 13/218 (5%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75
           +   RP +LEE +G  +  S +  FI+        L H+L  GPPG GKT+    +A   
Sbjct: 73  VEKYRPNSLEEVSGHHDIISTINRFID-----KNRLPHLLLYGPPGTGKTSTILALARRI 127

Query: 76  ---RELGVNFRSTSGPVIAKAGDLAALLTN-LEDRDVLFIDEIHRLSIIVEEILYPAMED 131
                +       +         +   +      + +  +    +    +       +++
Sbjct: 128 YGVNNMRQMVLELNASDDRGIDVVRDQIKTFASTKQIFSVAPTTKSESTLGAFKLIILDE 187

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
                   +    R ++   +             L+  L  R     R +  + ED++ +
Sbjct: 188 ADAMTATAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRC-TRFRFSPLKEEDIRVL 246

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           V +  +   + +  EA   +   S+G  R A  +L+  
Sbjct: 247 VDQVVEKEQVRIQPEAIDSLVQLSKGDMRRALNVLQAC 284


>gi|319956021|ref|YP_004167284.1| DNA polymerase iii, subunits gamma and tau [Nitratifractor
           salsuginis DSM 16511]
 gi|319418425|gb|ADV45535.1| DNA polymerase III, subunits gamma and tau [Nitratifractor
           salsuginis DSM 16511]
          Length = 615

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 68/217 (31%), Gaps = 39/217 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     RPR+  +  GQ      L   ++      + L H  LF G  G GKT+ A++ A
Sbjct: 4   ALARKYRPRSFADLVGQETVSQTLAQALD-----GDRLSHAYLFSGLRGSGKTSTARIFA 58

Query: 76  RE------------------------LGVNFRSTSGPVIAKAGDLAALLTNLEDRD---- 107
           +                           ++             D+  L+ + + +     
Sbjct: 59  KALLCEKGPTSQPCEECPHCIMANEYRHMDIIEMDAASNRGIDDIKELIEHTKYKPGSGR 118

Query: 108 --VLFIDEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
             +  IDE+H L+      L   +E+    +  ++      +     LSR          
Sbjct: 119 FKIFIIDEVHMLTTQAFNALLKTLEEPPEFVKFILATTDPLKLPATILSRTQHFRFKKIP 178

Query: 164 GLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
             L     +       ++ YE E L+ I + GA    
Sbjct: 179 PRLVKSHLEHILHLEGID-YEPEALEIIARSGAGSLR 214


>gi|322797318|gb|EFZ19436.1| hypothetical protein SINV_09794 [Solenopsis invicta]
          Length = 353

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 75/242 (30%), Gaps = 34/242 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RPR +++   Q E  +     I  A    +   ++LF GPPG GKT++    AR
Sbjct: 66  PWVEKYRPRNVDDIVEQTEVVN----VIRQAMEHGD-FPNMLFYGPPGTGKTSIIHAAAR 120

Query: 77  ------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD--------VLFIDEIHR 116
                       EL  +       V  K    A    N    D        ++ +DE   
Sbjct: 121 QMFGSMYKDRILELNASDDRGIQVVRDKIKSFALRRANPNGPDGKKCPPFKIVILDEADS 180

Query: 117 LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
           ++   +  L   ME                V   LSR     A+        PL D   I
Sbjct: 181 MTGAAQTALRRIMEKES------HSTRFCLVCNYLSRIIKPIASRCTKFRFKPLTDEKSI 234

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR-RVRDFAEV 235
                    E+LK    R      +  +     +  M  +   R+ G+     V D  +V
Sbjct: 235 ARLEYICNEENLKAD--RSVLEKIVQASGGDLRQAVMCLQSITRLKGKDYEITVNDALDV 292

Query: 236 AH 237
             
Sbjct: 293 IG 294


>gi|117620554|ref|YP_856735.1| DNA polymerase III, subunits gamma and tau [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117561961|gb|ABK38909.1| DNA polymerase III, subunits gamma and tau [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 849

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 63/324 (19%), Positives = 99/324 (30%), Gaps = 67/324 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP T E+  GQ    + L   ++  +     L H  L  G  G+GKTT+A+++A+ L   
Sbjct: 11  RPHTFEQVVGQHHVLTALTNALDQGR-----LHHAYLLSGTRGVGKTTIARILAKSLNCE 65

Query: 82  FRSTS------------------------GPVIAKAGDLAALLTNLEDRD------VLFI 111
              +S                             K  D   LL N++ R       V  I
Sbjct: 66  QGISSHPCGVCDTCREIDQGNFVDLLEIDAASRTKVEDTRELLDNVQYRPARGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSRHSFNALLKTLEE------------------PPPYVKFLLATTDPQKLPITIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L   +   +   ++      G      A   +A  + G+ R A  L     D
Sbjct: 168 SRC-LQFHLKSLDQTQIAKQLEWVLDQEGQPFEPRALLALAKAADGSMRDALSL----TD 222

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLR-YLTMIARNFGGGPVGIETISAGLS 290
            A      ++  +   A L          D   L   L  + R      +   T  A L 
Sbjct: 223 QALAHGNGSVRLDSVLAML-------GTLDHRHLHQLLEAVLRQDAPATMAKITEIATLG 275

Query: 291 EPRDAIEDLIEPYMIQQGFIQRTP 314
              D +   +E  + +    Q  P
Sbjct: 276 PDFDQLHAELEGLLHRIAMAQLLP 299


>gi|303234953|ref|ZP_07321578.1| DNA polymerase III, subunit gamma and tau [Finegoldia magna
           BVS033A4]
 gi|302494071|gb|EFL53852.1| DNA polymerase III, subunit gamma and tau [Finegoldia magna
           BVS033A4]
          Length = 537

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 79/227 (34%), Gaps = 27/227 (11%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVAREL 78
              RP T ++  GQ      LK  IE      + + H  +F G  G GKT+ A++ AR +
Sbjct: 6   RKYRPDTFDKVYGQKHITDILKNQIE-----TKNISHAYIFSGSRGTGKTSCAKIFARAI 60

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHR-----LSIIVEEILYPAMED 131
                    P            ++LE+    ++ +D         +  + ++++YP  + 
Sbjct: 61  NCLDLQDGNP----CNKCENCQSSLEESTLDIVEMDAASNRRIDDIRELRDKVIYPPTKL 116

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             + ++        I ATT +  +   +  R         
Sbjct: 117 KYKVYIIDEAHMITNEGFNALLKIMEEPPKHLVFILATTEIDKIPQTILSRCQRYEFKMI 176

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
              +    I +         + D+A   IA ++ G  R A  +L +V
Sbjct: 177 NSKDISDNI-KYILNDLNRKMDDDAIELIANKADGAMRDALSILDQV 222


>gi|269986895|gb|EEZ93171.1| Microtubule-severing ATPase [Candidatus Parvarchaeum acidiphilum
           ARMAN-4]
          Length = 763

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 92/257 (35%), Gaps = 31/257 (12%)

Query: 23  RPRT-LEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQV 73
           RP     +  G  +  + LK  I+      +            +L  GPPG GKT LA+ 
Sbjct: 481 RPSVGWADVGGLEQVKAQLKEAIDWPLKHPDSFRRVGITPPKGILLYGPPGTGKTLLARA 540

Query: 74  VARELGVNFRSTSGPVI------AKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEIL 125
           VA E   NF +  GP I           +  +          ++FIDE+  ++       
Sbjct: 541 VAHETESNFIAIKGPEIYNKYVGESEKRIREIFDKARQVSPSIIFIDELDSIASSRSNYE 600

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183
                +  ++ ++ E          L+   +I AT RV  + + +    RF   + +   
Sbjct: 601 GNNATEQVVNQLLTELDGIE----PLNNVIVIGATNRVDKVDSAILRTGRFDNIVFVPPP 656

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH------ 237
           + +  K I++       +    EA  +  +  + T    G  L R+   A +        
Sbjct: 657 DEDGRKDILKVYLNKMPIEGDKEALIDYLI--KKTEGYVGSDLERLSKEAGMNALRNSIS 714

Query: 238 AKTITREIADAALLRLA 254
           A  +T+E  + AL  + 
Sbjct: 715 ASKVTKEDFEKALDLVR 731



 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 69/194 (35%), Gaps = 23/194 (11%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARELG 79
           E+  G  +  S ++  +E      E            VL  GPPG GKT LA+ VA E  
Sbjct: 213 EDVGGLSDEVSKIREMVEMPLKHPEIFMRLGITPPRGVLLYGPPGTGKTLLARAVADESE 272

Query: 80  VNFRSTSGPVIAKA------GDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAMED 131
            +F + +GP +           L  +  + E     ++FIDEI  ++   EE +      
Sbjct: 273 AHFITINGPEVMSKWVGDAEKKLREIFDDAEKNAPSIIFIDEIDAIATKREESIGEVEHR 332

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
               L+            +  +  +IAAT R   +   L+   RF   I       +   
Sbjct: 333 VVSQLLT-----LMDGLRSRGKVIVIAATNRPNAIDPALRRPGRFDREIMFGVPNEKGRL 387

Query: 190 TIVQRGAKLTGLAV 203
            I+    +   L  
Sbjct: 388 EILNIHTRNMPLDK 401


>gi|327289387|ref|XP_003229406.1| PREDICTED: replication factor C subunit 2-like [Anolis
           carolinensis]
          Length = 329

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 77/225 (34%), Gaps = 38/225 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP  L E  G  +  S L+VF     AR   + +++  GPPG GKTT    +AR
Sbjct: 12  PLVEKYRPLKLSEIVGNEDTVSRLEVF-----AREGNVPNIIIAGPPGTGKTTSILCLAR 66

Query: 77  ------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIHRLSIIVE 122
                       EL  +       V  K    A     L      ++ +DE   ++   +
Sbjct: 67  ALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQ 126

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           + L   ME +                   +RF    A      +  P+Q R  +      
Sbjct: 127 QALRRTMEIYSKT----------------TRF--ALACNASDKIIEPIQSRCAVLRYSKL 168

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
            + + L   + +  +   +  TD+    I   ++G  R A   L+
Sbjct: 169 TDGQVLAR-LMKIVEKENVQYTDDGLEAIIFTAQGDMRQALNNLQ 212


>gi|326576888|gb|EGE26794.1| DNA polymerase III gamma and tau subunit [Moraxella catarrhalis
           O35E]
          Length = 748

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 50/234 (21%), Positives = 80/234 (34%), Gaps = 23/234 (9%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQ 72
           Q        RP+   E  GQ      L   I+  +     L H  LF G  G+GKTT+A+
Sbjct: 4   QYQVLARKYRPKNFSELLGQSHVAQALSNAIDTGR-----LHHAYLFTGTRGVGKTTIAR 58

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL-----YP 127
           ++A+ L      TS P      D    +      D++ ID   R  +     L     YP
Sbjct: 59  ILAKCLNCETGMTSQP--CGVCDTCISIDQGRFLDLIEIDAASRTKVEDTRELLENVPYP 116

Query: 128 AMEDFQLDLMVGEGPS--ARSVKINLS-------RFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++      ++ E       S    L            + ATT    L   +  R  +  
Sbjct: 117 PVQGRYKVYLIDEVHMLSTHSFNALLKTLEEPPDYVKFVFATTDPQKLPITIISRC-LQF 175

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
            L       L   + +      +  T+ A  ++A  ++G+ R A  L  +   F
Sbjct: 176 VLRPLPQACLSDHLAKVLDAEKIPFTENALWQLASAAKGSVRDALSLTDQAIAF 229


>gi|153824968|ref|ZP_01977635.1| DNA polymerase III, subunits gamma and tau [Vibrio cholerae MZO-2]
 gi|149741480|gb|EDM55510.1| DNA polymerase III, subunits gamma and tau [Vibrio cholerae MZO-2]
          Length = 692

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 50/258 (19%), Positives = 80/258 (31%), Gaps = 57/258 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP    E  GQ    + L    E A A+       LF G  G+GKTT+ ++ A+ L    
Sbjct: 11  RPTRFSEVVGQSHVLTAL----ENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCET 66

Query: 83  ------------------------RSTSGPVIAKAGDLAALLTNLEDRD------VLFID 112
                                            K  D   LL N++ +       V  ID
Sbjct: 67  GITATPCGQCATCQEIDQGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRFKVYLID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS      L   +E+                         + ATT    L   +  
Sbjct: 127 EVHMLSRHSFNALLKTLEE------------------PPEYVKFLLATTDPQKLPVTILS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R  +   L    +E+++  + +      ++   +A   +A  + G+ R A  L     D 
Sbjct: 169 RC-LQFHLKPISVENIQQQLDKVLHAEQISSDSKALNLLAHAADGSMRDALSL----TDQ 223

Query: 233 AEVAHAKTITREIADAAL 250
           A       +  +I    L
Sbjct: 224 AIALGNGVVKSDIVAHML 241


>gi|330922359|ref|XP_003299806.1| hypothetical protein PTT_10878 [Pyrenophora teres f. teres 0-1]
 gi|311326367|gb|EFQ92093.1| hypothetical protein PTT_10878 [Pyrenophora teres f. teres 0-1]
          Length = 393

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 82/225 (36%), Gaps = 12/225 (5%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
                   +   RP +L++  G  +  + +  F+++ +     L H+L  GPPG GKT+ 
Sbjct: 38  EAEDSLPWVEKYRPNSLDDVEGHKDIIATINKFVDSNR-----LPHLLLYGPPGTGKTST 92

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAAL-LTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
              +AR +  N       +   A D   + +   + +      +I   +    +      
Sbjct: 93  VLALARRIYGNKNMRQMVLELNASDDRGIDVVREQIKTFSSTKQIFASAPKTGDSSLATF 152

Query: 130 EDFQLDLMVGEGPSA-----RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           +   LD       +A     R ++   +             L+  L  R     R +  +
Sbjct: 153 KLIILDEADAMTATAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRC-TRFRFSPLK 211

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
            +D++ +V +  +   + +T +A   +   S+G  R A  +L+  
Sbjct: 212 DQDIRNLVDKVIEDEKVNITQDATGSLVTLSKGDMRRALNVLQAC 256


>gi|212697413|ref|ZP_03305541.1| hypothetical protein ANHYDRO_01983 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675605|gb|EEB35212.1| hypothetical protein ANHYDRO_01983 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 677

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 58/215 (26%), Positives = 88/215 (40%), Gaps = 28/215 (13%)

Query: 25  RTLEEFTGQVEACSNLKVFI------EAAKARAEALD-HVLFVGPPGLGKTTLAQVVARE 77
           +T  +  GQ EA  +L   +      +  K     L   VL VGPPG GKT LA+ VA E
Sbjct: 170 KTFADVAGQEEAKDSLNEVVDFLHGPQKYKEIGAVLPKGVLLVGPPGTGKTLLAKAVAGE 229

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
             V F S SG           A  +  L    +++   ++FIDEI  +    +   Y   
Sbjct: 230 ANVPFFSISGSEFVEMFVGMGASKVRDLFKQAKEKAPCIVFIDEIDAIGKKRDVSGYSGN 289

Query: 130 EDFQLD----LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183
           ++ +      L   +G  A    + LS      AT R  +L   L    RF   +++   
Sbjct: 290 DEREQTLNQLLNEMDGFDATEGVVLLS------ATNRPEILDPALTRPGRFDRRVQVELP 343

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGT 218
           +++  + I++  AK       D    EIA R+ GT
Sbjct: 344 DLKGREDILKVHAKKIKRE-NDIDYEEIAKRTAGT 377


>gi|257067200|ref|YP_003153456.1| ATP-dependent metalloprotease FtsH [Anaerococcus prevotii DSM
           20548]
 gi|256799080|gb|ACV29735.1| ATP-dependent metalloprotease FtsH [Anaerococcus prevotii DSM
           20548]
          Length = 662

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 56/213 (26%), Positives = 92/213 (43%), Gaps = 24/213 (11%)

Query: 25  RTLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +T ++  GQ EA  +L   +       +  +  A+    VL VGPPG GKT +AQ VA E
Sbjct: 170 KTFKDVAGQEEAKDSLSEIVDFLHNPGKYKEIGAKVPKGVLLVGPPGTGKTLMAQAVAGE 229

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
             V F S SG           A  +  L    +++   ++FIDEI  +    +   Y   
Sbjct: 230 ANVPFFSISGSEFVEMFVGMGASKVRDLFKQAKEKAPCIVFIDEIDAIGKKRDVSGYSGN 289

Query: 130 EDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           ++ +  L  ++ E     + +       L+AAT R  +L   L    RF   +++   ++
Sbjct: 290 DEREQTLNQLLNEMDGFDATEG----VVLLAATNRPEILDPALTRPGRFDRQVQVELPDL 345

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGT 218
           +  + I++  AK       D    EIA R+ GT
Sbjct: 346 KGREDILKVHAKNIKRE-DDIDYEEIAKRTAGT 377


>gi|188588998|ref|YP_001922412.1| putative cell division protease FtsH [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188499279|gb|ACD52415.1| ATP-dependent metallopeptidase HflB [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 698

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 66/259 (25%), Positives = 105/259 (40%), Gaps = 27/259 (10%)

Query: 26  TLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ EA  +LK  I          +  A+     L VGPPG GKT +A+ VA E 
Sbjct: 168 TFDDVAGQEEAKESLKEVIDFLNCPKRYTEIGAKLPKGALLVGPPGTGKTLIAKAVAGEA 227

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  L      +   ++FIDEI  +    +  +    E
Sbjct: 228 KVPFFSLSGSSFVEMFVGVGASRVRELFKEAVTKAPCIIFIDEIDAIGKSRDNQMQSNDE 287

Query: 131 -DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            +  L+ ++ E     S K       ++AAT R  +L   L    RF   + ++  + + 
Sbjct: 288 REQTLNQLLSEMDGFDSSKG----IVILAATNRPEILDKALLRPGRFDRRVIVDRPDFKG 343

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            + I++  AK   L   D    EIA   +GTP   G  L  + + A +   K   + +  
Sbjct: 344 REAILRVHAKNVNL-GDDVDLDEIA---KGTPGAVGADLANIVNEAALRAVKNRRKLVLQ 399

Query: 248 AAL-LRLAIDKMGFDQLDL 265
             L   + +   G ++ D 
Sbjct: 400 EDLRDAVEVIIAGKEKKDR 418


>gi|153813437|ref|ZP_01966105.1| hypothetical protein RUMOBE_03857 [Ruminococcus obeum ATCC 29174]
 gi|149830458|gb|EDM85550.1| hypothetical protein RUMOBE_03857 [Ruminococcus obeum ATCC 29174]
          Length = 633

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 58/234 (24%), Positives = 91/234 (38%), Gaps = 28/234 (11%)

Query: 26  TLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G+ EA  NL+  +       +  K  A     VL VGPPG GKT LA+ VA E 
Sbjct: 164 RFSDVAGEEEAKENLQEIVDYLHNPEKYTKVGASMPKGVLLVGPPGTGKTMLAKAVAGES 223

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG           A  +  L    +++   ++FIDEI  +    +  +    +
Sbjct: 224 NVPFFSMSGSEFVEMFVGMGASKVRDLFKQAKEKAPCIVFIDEIDAIGKKRDGQMAGGND 283

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E               ++AAT R   L   L    RF   + +   ++E
Sbjct: 284 EREQTLNQLLTEMDGFEGNNG----VIILAATNRPESLDPALTRPGRFDRRVPVELPDLE 339

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL-----LRRVRDFAEV 235
             + I++  AK   L+   +      M S  +      +     LR VRD  EV
Sbjct: 340 GREAILKVHAKKVQLSDDVDFHTIARMASGASGAELANIVNEAALRAVRDNREV 393


>gi|91223616|ref|ZP_01258881.1| DNA polymerase III subunits gamma and tau [Vibrio alginolyticus
           12G01]
 gi|91191702|gb|EAS77966.1| DNA polymerase III subunits gamma and tau [Vibrio alginolyticus
           12G01]
          Length = 701

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 86/249 (34%), Gaps = 25/249 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP   ++  GQ    + L    E A A+       LF G  G+GKT++ ++ A+  G+N 
Sbjct: 11  RPNQFDQVVGQKHVLTAL----ENALAQNRLHHAYLFSGTRGVGKTSIGRLFAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D+L ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGKCDTCREIDEGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++        + ATT    L   +  R  +   L    ++D+
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRC-LQFHLKPISVDDI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              +        ++   +A   I+  + G+ R A  L     D A       +  +I   
Sbjct: 184 HQQLDYILGQEQVSAEPKALGMISHAADGSMRDALSL----TDQAIALGNGAVQADIVSH 239

Query: 249 ALLRLAIDK 257
            L  +  D+
Sbjct: 240 MLGTIDTDQ 248


>gi|51599040|ref|YP_073228.1| cell division protein [Borrelia garinii PBi]
 gi|51573611|gb|AAU07636.1| cell division protein [Borrelia garinii PBi]
          Length = 639

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 59/270 (21%), Positives = 98/270 (36%), Gaps = 33/270 (12%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ E    L+  +E  K         A+    VL VG PG GKT LA+ VA E 
Sbjct: 170 TFKDVAGQEEVKQELREVVEFLKNPKKFEKIGAKIPKGVLLVGSPGTGKTLLAKAVAGEA 229

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV+F   SG       V   A  +  L  N       ++FIDE+  +       L    +
Sbjct: 230 GVSFFHMSGSDFVEMFVGVGASRVRDLFDNARKNSPCIIFIDELDAVGRSRGAGLGGGHD 289

Query: 131 DFQLDL------MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNF 182
           + +  L      M G G     +        ++AAT R  +L + L    RF   + ++ 
Sbjct: 290 EREQTLNQLLVEMDGFGTHVNVI--------VMAATNRPDVLDSALLRPGRFDRQVTVSL 341

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            +I++ + I+   +  T L+               +      L+      A   +   I 
Sbjct: 342 PDIKEREAILNIHSSKTKLSKDINLQVIARATPGASGADLANLINEGALIAARNNQDEIL 401

Query: 243 REIADAALLR--LAIDKMGFDQLDLRYLTM 270
            +  + A  +  + + K      D + L  
Sbjct: 402 MKDMEEARDKILMGVAKKSMTITDRQKLET 431


>gi|260584502|ref|ZP_05852249.1| DNA polymerase III, gamma and tau subunits [Granulicatella elegans
           ATCC 700633]
 gi|260158020|gb|EEW93089.1| DNA polymerase III, gamma and tau subunits [Granulicatella elegans
           ATCC 700633]
          Length = 573

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 80/228 (35%), Gaps = 21/228 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  E+  GQ      LK  I       +     LF GP G GKT+ A++ A+ +    
Sbjct: 11  RPQKFEDMVGQTAVTKTLKNAI----IHHKTSHAYLFTGPRGTGKTSAAKIFAKAINCLN 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P       L   +T     DV+ ID      +  +  I ++  Y   +      +
Sbjct: 67  PQDGEPCNDCL--LCKGITEGTIGDVIEIDAASNNGVEEIRDIRDKARYAPTQATYKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT    +   +  R            +++
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPKNVIFILATTEPHKIPATIISRTQ-RFDFRRITNDEI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
              ++   +   +A  +EA   IA  + G  R A  LL +V  F++  
Sbjct: 184 IQRLRYILEQEEIAYEEEALSVIARCANGGMRDALSLLDQVISFSDDK 231


>gi|121604575|ref|YP_981904.1| DNA polymerase III subunits gamma and tau [Polaromonas
           naphthalenivorans CJ2]
 gi|120593544|gb|ABM36983.1| DNA polymerase III, subunits gamma and tau [Polaromonas
           naphthalenivorans CJ2]
          Length = 605

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 53/323 (16%), Positives = 92/323 (28%), Gaps = 81/323 (25%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARE 77
               RP+   E  GQ      L   +   +     L H  LF G  G+GKTT+++++A+ 
Sbjct: 7   ARKYRPKNFSEMVGQSHVVQALGNALGTGR-----LHHAYLFTGTRGVGKTTVSRILAKS 61

Query: 78  LGV-----------------------------NFRSTSGPVIAKAGDLAALLTNL----- 103
           L                               ++            ++A LL        
Sbjct: 62  LNCTGPDGQGGITATPCGVCDACRDIDSGRFVDYTELDAASNRGVDEIAQLLEQAVYKPV 121

Query: 104 -EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTR 162
                V  IDE+H L+      +   +E+                         + ATT 
Sbjct: 122 VGRFKVFMIDEVHMLTNTAFNAMLKTLEE------------------PPEYLKFVLATTD 163

Query: 163 VGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
              +   +  R  +   L     E +   + +   L  +    +A   ++  +RG+ R A
Sbjct: 164 PQKVPATVLSRC-LQFNLRPMAPETVLEHLVQVLALENVPAEPQALRLLSRAARGSMRDA 222

Query: 223 GRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGG----- 277
             L     D A    +  +        L  +    +       R L  +AR  G      
Sbjct: 223 LSL----TDQAIAFGSGRLDEASVRVMLGSVDRSYVF------RLLDALARGDGRTVVET 272

Query: 278 ----GPVGIETISAGLSEPRDAI 296
                  G+   +A   E    I
Sbjct: 273 SEVLRLNGLS--AASTLEEMATI 293


>gi|216263728|ref|ZP_03435723.1| cell division protein FtsH [Borrelia afzelii ACA-1]
 gi|215980572|gb|EEC21393.1| cell division protein FtsH [Borrelia afzelii ACA-1]
          Length = 639

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 59/270 (21%), Positives = 98/270 (36%), Gaps = 33/270 (12%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ E    L+  +E  K         A+    VL VG PG GKT LA+ VA E 
Sbjct: 170 TFKDVAGQEEVKQELREVVEFLKNPKKFEKIGAKIPKGVLLVGSPGTGKTLLAKAVAGEA 229

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV+F   SG       V   A  +  L  N       ++FIDE+  +       L    +
Sbjct: 230 GVSFFHMSGSDFVEMFVGVGASRVRDLFDNARKNSPCIIFIDELDAVGRSRGAGLGGGHD 289

Query: 131 DFQLDL------MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNF 182
           + +  L      M G G     +        ++AAT R  +L + L    RF   + ++ 
Sbjct: 290 EREQTLNQLLVEMDGFGTHTNVI--------VMAATNRPDVLDSALLRPGRFDRQVTVSL 341

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            +I++ + I+   +  T L+               +      L+      A   +   I 
Sbjct: 342 PDIKEREAILNIHSSKTKLSKDINLQVIARATPGASGADLANLINEGALIAARNNQDEIL 401

Query: 243 REIADAALLR--LAIDKMGFDQLDLRYLTM 270
            +  + A  +  + + K      D + L  
Sbjct: 402 MKDMEEARDKILMGVAKKSMTITDRQKLET 431


>gi|111115623|ref|YP_710241.1| cell division protein [Borrelia afzelii PKo]
 gi|110890897|gb|ABH02065.1| cell division protein [Borrelia afzelii PKo]
          Length = 639

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 59/270 (21%), Positives = 98/270 (36%), Gaps = 33/270 (12%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ E    L+  +E  K         A+    VL VG PG GKT LA+ VA E 
Sbjct: 170 TFKDVAGQEEVKQELREVVEFLKNPKKFEKIGAKIPKGVLLVGSPGTGKTLLAKAVAGEA 229

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV+F   SG       V   A  +  L  N       ++FIDE+  +       L    +
Sbjct: 230 GVSFFHMSGSDFVEMFVGVGASRVRDLFDNARKNSPCIIFIDELDAVGRSRGAGLGGGHD 289

Query: 131 DFQLDL------MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNF 182
           + +  L      M G G     +        ++AAT R  +L + L    RF   + ++ 
Sbjct: 290 EREQTLNQLLVEMDGFGTHTNVI--------VMAATNRPDVLDSALLRPGRFDRQVTVSL 341

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            +I++ + I+   +  T L+               +      L+      A   +   I 
Sbjct: 342 PDIKEREAILNIHSSKTKLSKDINLQVIARATPGASGADLANLINEGALIAARNNQDEIL 401

Query: 243 REIADAALLR--LAIDKMGFDQLDLRYLTM 270
            +  + A  +  + + K      D + L  
Sbjct: 402 MKDMEEARDKILMGVAKKSMTITDRQKLET 431


>gi|21226406|ref|NP_632328.1| AAA ATPase family protein [Methanosarcina mazei Go1]
 gi|20904664|gb|AAM30000.1| AAA family ATPase [Methanosarcina mazei Go1]
          Length = 372

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 54/245 (22%), Positives = 97/245 (39%), Gaps = 22/245 (8%)

Query: 27  LEEFTGQVEACSN---LKVFIEAAKARAE-ALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
            E+  GQ  A      ++ F+E  +   + A  ++LF GP G GKT LA+ +A +  V  
Sbjct: 122 FEDVIGQELAKQKCRLIERFLEEPERFGKWAPRNILFFGPSGTGKTMLAKALANKTDVPL 181

Query: 83  RSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEIH--RLSIIVEEILYPAMEDF 132
                  +     GD A  +  L DR       ++FIDE+    L    +E+        
Sbjct: 182 IPVKATQLIGEYVGDGARQIHQLYDRAEEMAPCIIFIDELDAIALDRRFQEL------RG 235

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            +  +V    +     I       I +T R+  L + ++ RF   I       E++  I+
Sbjct: 236 DVSEIVNALLTEMDGIIERDGVCTICSTNRINSLDSAVRSRFEEEIEFVLPGEEEIVHIL 295

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTP--RIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           +   K   L V +     +A +++G     I  ++L+       +   + +T +  + AL
Sbjct: 296 ESNVKTFPLGVEECDFQALAKKAKGLSGRDIVEKILKTALHQTIIEDREIVTGKDFEKAL 355

Query: 251 LRLAI 255
            RL  
Sbjct: 356 ARLGR 360


>gi|167767544|ref|ZP_02439597.1| hypothetical protein CLOSS21_02063 [Clostridium sp. SS2/1]
 gi|167710836|gb|EDS21415.1| hypothetical protein CLOSS21_02063 [Clostridium sp. SS2/1]
          Length = 531

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 79/231 (34%), Gaps = 23/231 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     RP    E  GQ      L+      + R   + H  LF G  G GKTT+A+++A
Sbjct: 2   ALYRKFRPTRFSEVKGQDHIVKTLEN-----QMRTGRIGHAYLFCGTRGTGKTTVAKILA 56

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAME 130
           + +         P      ++   +      +V+ ID      +  +  I E++ Y    
Sbjct: 57  KAVNCEHPVDGEP--CGECEVCKAIAEGSSMNVIEIDAASNNGVDNIREIKEQVQYSPAT 114

Query: 131 DFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
                 ++ E             ++++        I ATT V  +   +  R       +
Sbjct: 115 GKYKVYIIDEVHMLSIGAFNALLKTLEEPPEYVIFILATTEVHKIPITILSRCQ-RYDFH 173

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
                 +K  +    +   +   D+A   +A  + G+ R A  LL +   F
Sbjct: 174 RITAATIKKQLSDLMEQEHVDTEDKALEYVARMADGSMRDALSLLDQCIAF 224


>gi|116669121|ref|YP_830054.1| DNA polymerase III subunits gamma and tau [Arthrobacter sp. FB24]
 gi|116609230|gb|ABK01954.1| DNA polymerase III, subunits gamma and tau [Arthrobacter sp. FB24]
          Length = 1078

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 69/231 (29%), Gaps = 19/231 (8%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP +  +  GQ      L   +   +         LF GP G GKTT A+++AR
Sbjct: 6   ALYRRYRPDSFADVIGQEHVTEPLMTALRKNRVNHAY----LFSGPRGCGKTTSARILAR 61

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL-----YPAMED 131
            L      T  P       +          DV+ ID      +     L     Y  + D
Sbjct: 62  CLNCAEGPTDTPCGKCPSCIELARGGSGSLDVIEIDAASHGGVDDARDLRERATYAPVRD 121

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             + V+        I ATT    +   ++ R         
Sbjct: 122 RYKIFIIDEAHMVTSAGFNALLKIVEEPPEHIKFIFATTEPDKVIGTIRSR-THHYPFRL 180

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
              E L   ++       + V       +     G+ R +  +L ++   A
Sbjct: 181 VPPEPLMAYLELLCNQENVPVAPGVLSLVIRAGGGSVRDSLSVLDQLMAGA 231


>gi|330445437|ref|ZP_08309089.1| DNA polymerase III, subunits gamma and tau [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328489628|dbj|GAA03586.1| DNA polymerase III, subunits gamma and tau [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 719

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 59/325 (18%), Positives = 102/325 (31%), Gaps = 69/325 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP    +  GQ    + L   +         L H  LF G  G+GKTT+A++ A+ L   
Sbjct: 11  RPSQFSDVVGQSHVLTALGNALT-----QNRLHHAYLFSGTRGVGKTTIARIFAKGLNCE 65

Query: 82  ------------------------FRSTSGPVIAKAGDLAALLTNLEDRD------VLFI 111
                                             K  D   LL N++ +       V  I
Sbjct: 66  EGITATPCGKCATCREIDEGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         I ATT    L   + 
Sbjct: 126 DEVHMLSRHSFNALLKTLEE------------------PPEYVKFILATTDPQKLPVTIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L   + + ++  + +      +    +A   +A  + G+ R A  L     D
Sbjct: 168 SRC-LQFHLKHLDHQQIQEQLAKVLTEEKVEYEAKALGLLARAAEGSMRDALSL----TD 222

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETI--SAGL 289
            A       +  +   A L  L  D+       L  L  +A++     + ++T+   A +
Sbjct: 223 QAIALGNGQVGADNVAAMLGTLNTDQA------LFLLEAVAKSDAN--IAMDTLQQLANV 274

Query: 290 SEPRDAIEDLIEPYMIQQGFIQRTP 314
               D++   +   + +    Q  P
Sbjct: 275 GVEWDSLLRELASQLHRVAMYQALP 299


>gi|327461339|gb|EGF07670.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
           SK1]
          Length = 556

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 47/270 (17%), Positives = 81/270 (30%), Gaps = 53/270 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     R +T  +  GQ    + L+  +E  K         LF GP G GKT++A++ A+
Sbjct: 4   ALYRKYRSQTFGQLVGQQVVATTLRQAVEQGKISHAY----LFSGPRGTGKTSVAKIFAK 59

Query: 77  ELGVNFR------------------------STSGPVIAKAGDLAALLTN------LEDR 106
            +    +                                   ++  +         L   
Sbjct: 60  AMNCPNQKDGEPCNDCYICQAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLAKH 119

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
            V  IDE+H LS      L   +E+                         I ATT +  +
Sbjct: 120 KVYIIDEVHMLSTGAFNALLKTLEEPT------------------ENVVFILATTELHKI 161

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
              +  R       +    + +  I +   +  G+    E    IA R+ G  R A  +L
Sbjct: 162 PATILSRVQRFEFKSIETQDIIGHI-EWILEQEGINFEQEGVQIIARRAEGGMRDALSIL 220

Query: 227 RRVRDFAEVAHAKTITREIADAALLRLAID 256
            +     +     T   E    ++   A+D
Sbjct: 221 DQALSLTQENRLTTYIAEEITGSISLGALD 250


>gi|332361424|gb|EGJ39228.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
           SK1056]
          Length = 556

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 47/270 (17%), Positives = 81/270 (30%), Gaps = 53/270 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     R +T  +  GQ    + L+  +E  K         LF GP G GKT++A++ A+
Sbjct: 4   ALYRKYRSQTFGQLVGQQVVATTLRQAVEQGKISHAY----LFSGPRGTGKTSVAKIFAK 59

Query: 77  ELGVNFR------------------------STSGPVIAKAGDLAALLTN------LEDR 106
            +    +                                   ++  +         L   
Sbjct: 60  AMNCPNQKDGEPCNDCYICQAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLAKH 119

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
            V  IDE+H LS      L   +E+                         I ATT +  +
Sbjct: 120 KVYIIDEVHMLSTGAFNALLKTLEEPT------------------ENVVFILATTELHKI 161

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
              +  R       +    + +  I +   +  G+    E    IA R+ G  R A  +L
Sbjct: 162 PATILSRVQRFEFKSIKTQDIIGHI-EWILEQEGINFEQEGVQIIARRAEGGMRDALSIL 220

Query: 227 RRVRDFAEVAHAKTITREIADAALLRLAID 256
            +     +     T   E    ++   A+D
Sbjct: 221 DQALSLTQENRLTTDIAEEITGSISLGALD 250


>gi|114052591|ref|NP_001040483.1| replication factor C4 [Bombyx mori]
 gi|95103078|gb|ABF51480.1| replication factor C4 [Bombyx mori]
          Length = 351

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 61/192 (31%), Gaps = 31/192 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+T+++   Q E    L+  +         L H+LF GPPG GKT+     A+
Sbjct: 32  PWVEKYRPKTIDDIVDQGEVVQVLRECLS-----GGDLPHLLFYGPPGTGKTSAILAAAK 86

Query: 77  ------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD--------VLFIDEIHR 116
                       EL  +       V  K    A L  + +  D        ++ +DE   
Sbjct: 87  QLFGDISRDRVLELNASDERGIQVVRDKVKAFAQLTVSGKRADGRPCPSYKLVILDEADS 146

Query: 117 LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
           ++   +  L   ME                +   +SR      +        PL     I
Sbjct: 147 MTTAAQAALRRTMER------ETRTTRFCLICNYVSRIIPPITSRCSKFRFKPLARENVI 200

Query: 177 PIRLNFYEIEDL 188
                  E E++
Sbjct: 201 KRLREICEAENV 212


>gi|328751836|gb|AEB39673.1| MIP17311p [Drosophila melanogaster]
          Length = 740

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 60/271 (22%), Positives = 100/271 (36%), Gaps = 24/271 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T E+  G  EA   LK  +E  K+         +    VL VGPPG GKT LA+ VA E 
Sbjct: 302 TFEDVKGCDEAKQELKEVVEFLKSPEKFSNLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F   +GP          A  +  L    + R   V+FIDEI  +       +     
Sbjct: 362 KVPFFHAAGPEFDEVLVGQGARRVRDLFKAAKARAPCVIFIDEIDSVGAKRTNSVLHPYA 421

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
           +  ++ ++ E               ++ AT R   L   L    RF + + ++  +    
Sbjct: 422 NQTINQLLSEMDGFHQNAG----VIVLGATNRRDDLDQALLRPGRFDVEVMVSTPDFTGR 477

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAM-RSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           K I+     LT +   +     +A   S  T      ++ +    A +  A+T++ +  +
Sbjct: 478 KEIL--SLYLTKILHDEIDLDMLARGTSGFTGADLENMINQAALRAAIDGAETVSMKHLE 535

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
            A  ++ +      +L       I     GG
Sbjct: 536 TARDKVLMGPERKARLPDEEANTITAYHEGG 566


>gi|326560228|gb|EGE10616.1| DNA polymerase III gamma and tau subunit [Moraxella catarrhalis
           7169]
          Length = 748

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 50/234 (21%), Positives = 80/234 (34%), Gaps = 23/234 (9%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQ 72
           Q        RP+   E  GQ      L   I+  +     L H  LF G  G+GKTT+A+
Sbjct: 4   QYQVLARKYRPKNFSELLGQSHVAQALSNAIDTGR-----LHHAYLFTGTRGVGKTTIAR 58

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL-----YP 127
           ++A+ L      TS P      D    +      D++ ID   R  +     L     YP
Sbjct: 59  ILAKCLNCETGMTSQP--CGVCDTCISIDQGRFLDLIEIDAASRTKVEDTRELLENVPYP 116

Query: 128 AMEDFQLDLMVGEGPS--ARSVKINLS-------RFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++      ++ E       S    L            + ATT    L   +  R  +  
Sbjct: 117 PVQGRYKVYLIDEVHMLSTHSFNALLKTLEEPPDYVKFVFATTDPQKLPITIISRC-LQF 175

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
            L       L   + +      +  T+ A  ++A  ++G+ R A  L  +   F
Sbjct: 176 VLRPLPQACLSDHLAKVLDAEKIPFTENALWQLASTAKGSVRDALSLTDQAIAF 229


>gi|269962151|ref|ZP_06176505.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269833235|gb|EEZ87340.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 729

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 53/265 (20%), Positives = 86/265 (32%), Gaps = 57/265 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP   ++  GQ    + L    E A A+       LF G  G+GKT++ ++ A+ L    
Sbjct: 11  RPNKFDQVVGQNHVLTAL----ENALAQNRLHHAYLFSGTRGVGKTSIGRLFAKGLNCET 66

Query: 83  RSTSGP------------------------VIAKAGDLAALLTNLEDRD------VLFID 112
             T+ P                           K  D   LL N++ +       V  ID
Sbjct: 67  GITANPCGECDTCREIDEGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRFKVYLID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS      L   +E+                         + ATT    L   +  
Sbjct: 127 EVHMLSRHSFNALLKTLEE------------------PPEYVKFLLATTDPQKLPVTILS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R  +   L    ++D+   +    +   ++    A   I+  + G+ R A  L     D 
Sbjct: 169 RC-LQFHLKPISVDDIHQQLDHILEKEQVSAEARALGMISHAADGSMRDALSL----TDQ 223

Query: 233 AEVAHAKTITREIADAALLRLAIDK 257
           A      TI  +I    L  +  D+
Sbjct: 224 AIALGNGTIQTDIVSHMLGTIDTDQ 248


>gi|225551709|ref|ZP_03772653.1| cell division protein FtsH [Borrelia sp. SV1]
 gi|225371736|gb|EEH01162.1| cell division protein FtsH [Borrelia sp. SV1]
          Length = 639

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 59/270 (21%), Positives = 98/270 (36%), Gaps = 33/270 (12%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ E    L+  +E  K         A+    VL VG PG GKT LA+ VA E 
Sbjct: 170 TFKDVAGQEEVKQELREVVEFLKNPKKFEKIGAKIPKGVLLVGSPGTGKTLLAKAVAGEA 229

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV+F   SG       V   A  +  L  N       ++FIDE+  +       L    +
Sbjct: 230 GVSFFHMSGSDFVEMFVGVGASRVRDLFDNARKNSPCIIFIDELDAVGRSRGAGLGGGHD 289

Query: 131 DFQLDL------MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNF 182
           + +  L      M G G     +        ++AAT R  +L + L    RF   + ++ 
Sbjct: 290 EREQTLNQLLVEMDGFGTHTNVI--------VMAATNRPDVLDSALLRPGRFDRQVTVSL 341

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            +I++ + I+   +  T L+               +      L+      A   +   I 
Sbjct: 342 PDIKEREAILNIHSSKTKLSKDINLQVIARATPGASGADLANLINEGALIAARNNQDEIL 401

Query: 243 REIADAALLR--LAIDKMGFDQLDLRYLTM 270
            +  + A  +  + + K      D + L  
Sbjct: 402 MKDMEEARDKILMGVAKKSMTITDRQKLET 431


>gi|156975356|ref|YP_001446263.1| DNA polymerase III subunits gamma and tau [Vibrio harveyi ATCC
           BAA-1116]
 gi|156526950|gb|ABU72036.1| hypothetical protein VIBHAR_03087 [Vibrio harveyi ATCC BAA-1116]
          Length = 736

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 53/265 (20%), Positives = 86/265 (32%), Gaps = 57/265 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP   ++  GQ    + L    E A A+       LF G  G+GKT++ ++ A+ L    
Sbjct: 11  RPNKFDQVVGQNHVLTAL----ENALAQNRLHHAYLFSGTRGVGKTSIGRLFAKGLNCET 66

Query: 83  RSTSGP------------------------VIAKAGDLAALLTNLEDRD------VLFID 112
             T+ P                           K  D   LL N++ +       V  ID
Sbjct: 67  GITANPCGECDTCREIDEGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRFKVYLID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS      L   +E+                         + ATT    L   +  
Sbjct: 127 EVHMLSRHSFNALLKTLEE------------------PPEYVKFLLATTDPQKLPVTILS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R  +   L    ++D+   +    +   ++    A   I+  + G+ R A  L     D 
Sbjct: 169 RC-LQFHLKPISVDDIHQQLDHILEKEQVSAEARALGMISHAADGSMRDALSL----TDQ 223

Query: 233 AEVAHAKTITREIADAALLRLAIDK 257
           A      TI  +I    L  +  D+
Sbjct: 224 AIALGNGTIQTDIVSHMLGTIDTDQ 248


>gi|146093994|ref|XP_001467108.1| replication factor C, subunit 2 [Leishmania infantum JPCM5]
 gi|134071472|emb|CAM70161.1| putative replication factor C, subunit 2 [Leishmania infantum
           JPCM5]
          Length = 354

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 53/249 (21%), Positives = 78/249 (31%), Gaps = 51/249 (20%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           S         +   RPRTL E   Q EA   L+    A       + H LF GPPG GKT
Sbjct: 18  SDTAGAAAPWVEKYRPRTLAEVEAQDEAVGALR----ACLKEGANMPHFLFHGPPGTGKT 73

Query: 69  TLAQVVA-------------RELGVNFRSTSGPVIAKAGDLAALLTNLE----------- 104
           T    VA             REL  +       V  K    A    +             
Sbjct: 74  TSILAVAHELFGPDYIRSRVRELNASDDRGINVVREKVKIFAQGAVSSSGSSVTQSDGKV 133

Query: 105 ----DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAAT 160
                  ++ +DE   L    +  L   MEDF                 +++RF      
Sbjct: 134 YPVPPFKLIILDEADALLPDAQAALRRMMEDFS----------------DVTRF--CILC 175

Query: 161 TRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPR 220
             V  + +P+  R     R        L   ++  A+  G+ ++  +   +   S G  R
Sbjct: 176 NYVSRIIDPIASRCA-KYRFKPLVKSALYHRIEYVAQAEGITLSPASLHALDTVSGGDLR 234

Query: 221 IAGRLLRRV 229
           +A   L+  
Sbjct: 235 LAIMHLQSA 243


>gi|312375083|gb|EFR22519.1| hypothetical protein AND_15087 [Anopheles darlingi]
          Length = 790

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 56/243 (23%), Positives = 85/243 (34%), Gaps = 25/243 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T E+  G  EA   LK  +E  K          +    VL VGPPG GKT LA+ VA E 
Sbjct: 347 TFEDVKGCDEAKQELKEVVEFLKNPGKFSNLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 406

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F   +GP          A  +  L    ++R   V+FIDEI  +       +     
Sbjct: 407 GVPFFHAAGPEFDEVLVGQGARRVRDLFKAAKERAPCVIFIDEIDSVGAKRTNSVLHPYA 466

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
           +  ++ ++ E    +  +       ++ AT R   L   L    RF + + +   +    
Sbjct: 467 NQTINQLLSEMDGFQQNEG----VIVLGATNRRDDLDQALLRPGRFDVEVVVPTPDFTGR 522

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL----LRRVRDFAEVAHAKTITRE 244
           K I+            +               I   +    LR   D AEV + K +   
Sbjct: 523 KEILTYYLGKILSKDINIDQLARGTTGFTGADIENMVNQAALRAAIDGAEVVNMKHLENA 582

Query: 245 IAD 247
              
Sbjct: 583 RDK 585


>gi|194750805|ref|XP_001957720.1| GF23886 [Drosophila ananassae]
 gi|190625002|gb|EDV40526.1| GF23886 [Drosophila ananassae]
          Length = 331

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 50/241 (20%), Positives = 85/241 (35%), Gaps = 38/241 (15%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M +   +   +       I   RP   +E  G  +  + L VF     A      +++  
Sbjct: 1   MPEEPEITGDDKRNHLPWIEKYRPVKFKEIVGNEDTVARLSVFATQGNA-----PNIIIA 55

Query: 61  GPPGLGKTTLAQVVAR------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDR 106
           GPPG+GKTT  Q +AR            EL  +       V  K    A     L     
Sbjct: 56  GPPGVGKTTTIQCLARILLGDSYKEAVLELNASNERGIDVVRNKIKMFAQQKVTLPRGRH 115

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
            ++ +DE   ++   ++ L   ME +                 N +RF L   T+    +
Sbjct: 116 KIVILDEADSMTEGAQQALRRTMEIYS----------------NTTRFALACNTSE--KI 157

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
             P+Q R  +       + + L  +++  +K   L  TD+    I   ++G  R A   L
Sbjct: 158 IEPIQSRCAMLRFTKLSDSQVLAKLLE-VSKWEKLHYTDDGLEAIVFTAQGDMRQALNNL 216

Query: 227 R 227
           +
Sbjct: 217 Q 217


>gi|187934823|ref|YP_001887468.1| Cell division protease FtsH homolog [Clostridium botulinum B str.
           Eklund 17B]
 gi|187722976|gb|ACD24197.1| ATP-dependent metallopeptidase HflB [Clostridium botulinum B str.
           Eklund 17B]
          Length = 694

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 66/259 (25%), Positives = 105/259 (40%), Gaps = 27/259 (10%)

Query: 26  TLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ EA  +LK  I          +  A+     L VGPPG GKT +A+ VA E 
Sbjct: 168 TFDDVAGQEEAKESLKEVIDFLNCPKRYTEIGAKLPKGALLVGPPGTGKTLIAKAVAGEA 227

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  L      +   ++FIDEI  +    +  +    E
Sbjct: 228 KVPFFSLSGSSFVEMFVGVGASRVRELFKEAVAKAPCIIFIDEIDAIGKSRDNQMQSNDE 287

Query: 131 -DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            +  L+ ++ E     S K       ++AAT R  +L   L    RF   + ++  + + 
Sbjct: 288 REQTLNQLLSEMDGFDSSKG----IVILAATNRPEILDKALLRPGRFDRRVIVDRPDFKG 343

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            + I++  AK   L   D    EIA   +GTP   G  L  + + A +   K   + +  
Sbjct: 344 REAILRVHAKNVNL-GDDVDIDEIA---KGTPGAVGADLANIVNEAALRAVKNRRKLVLQ 399

Query: 248 AAL-LRLAIDKMGFDQLDL 265
             L   + +   G ++ D 
Sbjct: 400 EDLRDAVEVIIAGKEKKDR 418


>gi|309790307|ref|ZP_07684874.1| DNA polymerase III, subunits gamma and tau [Oscillochloris
           trichoides DG6]
 gi|308227641|gb|EFO81302.1| DNA polymerase III, subunits gamma and tau [Oscillochloris
           trichoides DG6]
          Length = 568

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 85/229 (37%), Gaps = 26/229 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           R +T  E  GQ      L+  I       E + H  LF GP G+GKTT+A+++A+ +   
Sbjct: 11  RSQTFAELIGQEHVVQTLRNAI-----IEERVAHAYLFTGPRGVGKTTMARLLAKAVNC- 64

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVE------EILYPAMEDFQ 133
             +   P     G   A +   E R  DV+ +D     S+             PA    +
Sbjct: 65  --TDPNPAARPCGQCPACVAIAEGRAVDVIEMDAASHTSVEDAREIIERVQFRPAEMRSK 122

Query: 134 LDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           + ++               ++++        I ATT V  +   +  R         + I
Sbjct: 123 VYIIDETHMLSTAAFNALLKTLEEPPDHAIFILATTEVHKVPATILSRCQ-RFTFTRHGI 181

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
                 +++ A   GL++       IA  + G+ R A  +L ++  F +
Sbjct: 182 AATSNHLRQIASAEGLSLEAGVPEAIARAATGSMRDALGVLEQLASFGQ 230


>gi|262200018|ref|YP_003271227.1| DNA polymerase III subunits gamma/tau [Haliangium ochraceum DSM
           14365]
 gi|262083365|gb|ACY19334.1| DNA polymerase III, subunits gamma and tau [Haliangium ochraceum
           DSM 14365]
          Length = 649

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 53/316 (16%), Positives = 88/316 (27%), Gaps = 62/316 (19%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T  E  GQ      L      A A+       LF GP G+GKTT A+++ + L
Sbjct: 7   ARKYRPNTFSEVVGQEHVTRTL----ANAFAKDRVHHAFLFCGPRGVGKTTAARILGKAL 62

Query: 79  GVN------------------------FRSTSGPVIAKAGDLAALLTNLE------DRDV 108
                                      +    G        +  L   +        + V
Sbjct: 63  NCERGPTAEPCGSCVACETITNGTAVDYFEMDGASNRGIDAIRELTEAVRYQPAVLRKKV 122

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
             IDE+H L+      L   +E+                       + + ATT    + N
Sbjct: 123 YVIDEVHMLTTEAFNALLKTLEE------------------PPPHVSFVLATTEPHKVPN 164

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            +  R              L   ++R      + V   A   I   S G+ R +  L  +
Sbjct: 165 TILSRCQ-RYDFKLVPAPKLIEHLRRIFAAEEIEVDSGAISLIVRESGGSVRDSLSLCDQ 223

Query: 229 VRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAG 288
           V  +       T     +D A +    D+     L    ++ +A       +     +  
Sbjct: 224 VISY-----VGTSNIGESDVAEVLGVADR----SLTRTLVSALAEGDAKSALEAVEAADA 274

Query: 289 LSEPRDAIEDLIEPYM 304
                  +   I  Y+
Sbjct: 275 RGVDEVQLARAIVRYL 290


>gi|153007366|ref|YP_001368581.1| DNA polymerase III subunits gamma and tau [Ochrobactrum anthropi
           ATCC 49188]
 gi|151559254|gb|ABS12752.1| DNA polymerase III, subunits gamma and tau [Ochrobactrum anthropi
           ATCC 49188]
          Length = 605

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 52/248 (20%), Positives = 89/248 (35%), Gaps = 25/248 (10%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+   +  GQ      L    E  +         +  G  G+GKTT A+++AR L
Sbjct: 14  ARKYRPQNFNDLIGQEPMVRTLNNAFETGRIAQAW----MLTGVRGVGKTTTARILARAL 69

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR--DVLFID-----EIHRLSIIVEEILYPAMED 131
                +   P I  +         +E R  DV+ +D      I  +  I+E++ Y  +  
Sbjct: 70  NYKTDTIDQPTIDLSVQGENCQAIMEGRHVDVIEMDAASHTGIDDIREIIEQVRYRPVSA 129

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT +  +   +  R      L  
Sbjct: 130 RYKVYIIDEVHMLSNQAFNGLLKTLEEPPPHVKFIFATTEIRKVPITVLSRCQ-RFDLRR 188

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            E   L   ++R A+   +AV D +   IA    G+ R +  +     D A    A T+T
Sbjct: 189 IESGTLAQHLRRIAEAEQIAVDDTSLAMIARAGEGSARDSLSIF----DQAIAHGAGTVT 244

Query: 243 REIADAAL 250
            E   + L
Sbjct: 245 AEAVRSML 252


>gi|327489199|gb|EGF20992.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
           SK1058]
 gi|328946036|gb|EGG40182.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
           SK1087]
          Length = 556

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 47/270 (17%), Positives = 81/270 (30%), Gaps = 53/270 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     R +T  +  GQ    + L+  +E  K         LF GP G GKT++A++ A+
Sbjct: 4   ALYRKYRSQTFGQLVGQQVVATTLRQAVEQGKISHAY----LFSGPRGTGKTSVAKIFAK 59

Query: 77  ELGVNFR------------------------STSGPVIAKAGDLAALLTN------LEDR 106
            +    +                                   ++  +         L   
Sbjct: 60  AMNCPNQKDGEPCNDCYICQAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLAKH 119

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
            V  IDE+H LS      L   +E+                         I ATT +  +
Sbjct: 120 KVYIIDEVHMLSTGAFNALLKTLEEPT------------------ENVVFILATTELHKI 161

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
              +  R       +    + +  I +   +  G+    E    IA R+ G  R A  +L
Sbjct: 162 PATILSRVQRFEFKSIKTQDIIGHI-EWILEQEGINFEQEGVQIIARRAEGGMRDALSIL 220

Query: 227 RRVRDFAEVAHAKTITREIADAALLRLAID 256
            +     +     T   E    ++   A+D
Sbjct: 221 DQALSLTQENRLTTYIAEEITGSISLGALD 250


>gi|268567115|ref|XP_002639894.1| C. briggsae CBR-CDC-48.3 protein [Caenorhabditis briggsae]
          Length = 721

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 58/291 (19%), Positives = 98/291 (33%), Gaps = 44/291 (15%)

Query: 21  LLRPRTLEEFT------------GQVEACSNLKVFI-------EAAKARA-EALDHVLFV 60
            +RP  + +F             G  E    ++  +       EA +    +    +L  
Sbjct: 437 RIRPTGIRQFILEVPNVSWNDIGGNEELKLEIQQAVIWPQKHPEAFERFGIDPPAGILLY 496

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLAALLTNLEDR------DVLFID 112
           GPPG  KT +A+ +A E  +NF +  GP +     GD    + +L  R       ++F D
Sbjct: 497 GPPGCSKTLIARALANEAKMNFLAVKGPELFSKWVGDSEKAIRDLFTRARQVAPTIVFFD 556

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           EI  +           + D  L  ++ E           SR  L+AAT R   L + L  
Sbjct: 557 EIDAVGSSRGSEKSSGVSDRVLAQLLTELDGLEKS----SRVVLLAATNRPDQLDSALLR 612

Query: 173 --RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAM-RSRGTPRIAGRLLRRV 229
             R    I +     E  + I++   +   +        ++    S  +      + R  
Sbjct: 613 PGRLDRAIYVGLPCEETRRAILKMRTRKMAIDDVTATIQKLVEKTSGYSGAELVAVCRTA 672

Query: 230 RDFA--EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
             FA  E   A  +  +  + AL  +             YL  I  +F  G
Sbjct: 673 AMFAMRENIEANIVEWKHFEDALTAVVSRTEA-------YLLEIYDDFKAG 716


>gi|126454158|ref|YP_001066508.1| DNA polymerase III subunits gamma and tau [Burkholderia
           pseudomallei 1106a]
 gi|242316585|ref|ZP_04815601.1| DNA polymerase III, subunits gamma and tau [Burkholderia
           pseudomallei 1106b]
 gi|126227800|gb|ABN91340.1| DNA polymerase III, subunits gamma and tau [Burkholderia
           pseudomallei 1106a]
 gi|242139824|gb|EES26226.1| DNA polymerase III, subunits gamma and tau [Burkholderia
           pseudomallei 1106b]
          Length = 825

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 85/229 (37%), Gaps = 27/229 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+      GQ      L   ++  +     L H  LF G  G+GKTTL+++ A+ L   
Sbjct: 11  RPKDFASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAMEDFQL 134
              TS P     G   A     E R V +++        +  ++ ++E  +Y  ++    
Sbjct: 66  TGVTSQP----CGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             M+ E             ++++        I ATT    +   +  R  +   L     
Sbjct: 122 VYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPA 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
             + + ++R      +A   +A   +A  ++G+ R A  L  +   ++ 
Sbjct: 181 GHIVSHLERILGEERIAFEPQALRFLARAAQGSMRDALSLTDQAIAYSA 229


>gi|309362431|emb|CAP28088.2| CBR-CDC-48.3 protein [Caenorhabditis briggsae AF16]
          Length = 736

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 58/291 (19%), Positives = 98/291 (33%), Gaps = 44/291 (15%)

Query: 21  LLRPRTLEEFT------------GQVEACSNLKVFI-------EAAKARA-EALDHVLFV 60
            +RP  + +F             G  E    ++  +       EA +    +    +L  
Sbjct: 452 RIRPTGIRQFILEVPNVSWNDIGGNEELKLEIQQAVIWPQKHPEAFERFGIDPPAGILLY 511

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLAALLTNLEDR------DVLFID 112
           GPPG  KT +A+ +A E  +NF +  GP +     GD    + +L  R       ++F D
Sbjct: 512 GPPGCSKTLIARALANEAKMNFLAVKGPELFSKWVGDSEKAIRDLFTRARQVAPTIVFFD 571

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           EI  +           + D  L  ++ E           SR  L+AAT R   L + L  
Sbjct: 572 EIDAVGSSRGSEKSSGVSDRVLAQLLTELDGLEKS----SRVVLLAATNRPDQLDSALLR 627

Query: 173 --RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAM-RSRGTPRIAGRLLRRV 229
             R    I +     E  + I++   +   +        ++    S  +      + R  
Sbjct: 628 PGRLDRAIYVGLPCEETRRAILKMRTRKMAIDDVTATIQKLVEKTSGYSGAELVAVCRTA 687

Query: 230 RDFA--EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
             FA  E   A  +  +  + AL  +             YL  I  +F  G
Sbjct: 688 AMFAMRENIEANIVEWKHFEDALTAVVSRTEA-------YLLEIYDDFKAG 731


>gi|257091956|ref|YP_003165597.1| DNA polymerase III subunits gamma and tau [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257044480|gb|ACV33668.1| DNA polymerase III, subunits gamma and tau [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 553

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 49/269 (18%), Positives = 85/269 (31%), Gaps = 63/269 (23%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPRT     GQ      L   +       + L H  LF G  G+GKTTLA+++A+ L   
Sbjct: 11  RPRTFANLVGQEHVVRALTHALT-----EQRLHHAYLFTGTRGVGKTTLARILAKALNCE 65

Query: 82  F------------------------RSTSGPVIAKAGDLAALLTNL------EDRDVLFI 111
                                             +  ++  LL N           V  I
Sbjct: 66  TGVSATPCGTCSACLEIDSGRFVDLLEVDAATNTRVDEMRQLLENAVYAPTRGRFKVYVI 125

Query: 112 DEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+H LS      +   +E+    +  ++      +     LSR            +T P
Sbjct: 126 DEVHMLSTSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLK----QMTQP 181

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           L                 + + ++   ++  ++    A   +A  + G+ R A  LL   
Sbjct: 182 L-----------------IASHLKHILEVEAISADTGALHLLARSAAGSMRDALSLL--- 221

Query: 230 RDFAEVAHAKTITREIADAALLRLAIDKM 258
            D A    +  +        L  + +D++
Sbjct: 222 -DQAIAHGSGKVEEAQVREMLGSVDLDQL 249


>gi|157872662|ref|XP_001684866.1| replication factor C, subunit 2 [Leishmania major strain Friedlin]
 gi|68127936|emb|CAJ06571.1| putative replication factor C, subunit 2 [Leishmania major strain
           Friedlin]
          Length = 354

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 53/249 (21%), Positives = 78/249 (31%), Gaps = 51/249 (20%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           S         +   RPRTL E   Q EA   L+    A       + H LF GPPG GKT
Sbjct: 18  SDTAGAAAPWVEKYRPRTLAEVEAQDEAVGALR----ACLKEGANMPHFLFHGPPGTGKT 73

Query: 69  TLAQVVA-------------RELGVNFRSTSGPVIAKAGDLAALLTNLE----------- 104
           T    VA             REL  +       V  K    A    +             
Sbjct: 74  TSILAVAHELFGPDYIRSRVRELNASDDRGISVVREKVKIFAQGAVSSSGSSVTQSDGKV 133

Query: 105 ----DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAAT 160
                  ++ +DE   L    +  L   MEDF                 +++RF      
Sbjct: 134 YPVPPFKLIILDEADALLPDAQAALRRMMEDFS----------------DVTRF--CILC 175

Query: 161 TRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPR 220
             V  + +P+  R     R        L   ++  A+  G+ ++  +   +   S G  R
Sbjct: 176 NYVSRIIDPIASRCA-KYRFKPLVKSALYHRIEYVAQAEGITLSPASLHALDTVSGGDLR 234

Query: 221 IAGRLLRRV 229
           +A   L+  
Sbjct: 235 LAIMHLQSA 243


>gi|18859927|ref|NP_573245.1| CG8142 [Drosophila melanogaster]
 gi|17862532|gb|AAL39743.1| LD35209p [Drosophila melanogaster]
 gi|22832754|gb|AAF48768.2| CG8142 [Drosophila melanogaster]
          Length = 353

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 55/320 (17%), Positives = 102/320 (31%), Gaps = 43/320 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RPR +++   Q E  + L+  +E        L ++L  GPPG GKT+     +R
Sbjct: 31  PWVEKYRPRNVDDVVEQSEVVAVLRKCVE-----GGDLPNMLLYGPPGTGKTSTILAASR 85

Query: 77  ------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD--------VLFIDEIHR 116
                       EL  +       V  K  + + L  +    D        ++ +DE   
Sbjct: 86  QIFGDMFKDRILELNASDERGINVVRTKIKNFSQLSASSVRPDGKPCPPFKIIILDEADS 145

Query: 117 LSIIVEEILYPAM--EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRF 174
           ++   +  L   M  E       +     +R +    SR +            + + DR 
Sbjct: 146 MTHAAQSALRRTMEKESRSTRFCLICNYVSRIIVPITSRCSKFRFKALGE---DKVIDRL 202

Query: 175 GIPIRLNF--YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR---- 228
                +     E +  K+IV+        A+T   +C            A  L       
Sbjct: 203 KYICEMEGVKIEDDAYKSIVKISGGDLRRAITTLQSCYRLKGPEHIINTA-DLFEMSGVI 261

Query: 229 ----VRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIET 284
               + D+ EV  +     E  +  +  +        Q+  +++  I  + G       T
Sbjct: 262 PEYYLEDYLEVCRSG--NYERLEQFVREIGFSAYSVGQMMEQFVEFIVHHPGLNDPQKAT 319

Query: 285 ISAGLSEPRDAIEDLIEPYM 304
           I   L E    ++D    Y+
Sbjct: 320 ICDKLGECCFRLQDGGSEYL 339


>gi|66812244|ref|XP_640301.1| replication factor C subunit [Dictyostelium discoideum AX4]
 gi|74855117|sp|Q54ST4|RFC5_DICDI RecName: Full=Probable replication factor C subunit 5; AltName:
           Full=Activator 1 subunit 5
 gi|60468315|gb|EAL66323.1| replication factor C subunit [Dictyostelium discoideum AX4]
          Length = 347

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/247 (15%), Positives = 73/247 (29%), Gaps = 43/247 (17%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           + R   +    +   RP+ L++     +    +   I+        L H+LF GPPG GK
Sbjct: 16  IERKQFESLPWVEKYRPKNLDDLIAHEDITQTITKLID-----NNTLPHLLFYGPPGTGK 70

Query: 68  TTLAQVVAR-----ELGVNFRSTSGPVIAKAGDLAALLTNLE----------DRDVLFID 112
           T+  Q +AR              +         +   +                 ++ +D
Sbjct: 71  TSTIQAIARKLYGDNYSRMVLELNASDDRGIDVVREQIKTFASSMFFFNTTVPYKLIILD 130

Query: 113 EIHRLSIIVEEILYPAMEDFQLD--LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           E   ++ I +  L   +E +       +      + +    SR T               
Sbjct: 131 EADSMTNIAQTALRRVIEKYTKTTRFCIVCNYVIKIIPALQSRCT--------------- 175

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
             RF             LK I++       + V  +A   +     G  R    +L+ V 
Sbjct: 176 --RFRFSPLPTPPTEIRLKEIIE----KENVKVDSKAMNAVLELGCGDMRKCLNILQSVS 229

Query: 231 DFAEVAH 237
             +   +
Sbjct: 230 MSSIDNN 236


>gi|317120921|ref|YP_004100924.1| DNA polymerase III subunits gamma and tau [Thermaerobacter
           marianensis DSM 12885]
 gi|315590901|gb|ADU50197.1| DNA polymerase III, subunits gamma and tau [Thermaerobacter
           marianensis DSM 12885]
          Length = 825

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/241 (19%), Positives = 81/241 (33%), Gaps = 21/241 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  +   GQ      L   +   +         LF GP G GKT++A+++A+   VN 
Sbjct: 13  RPQRFDGVVGQEHVIRTLANALRTGRVAHAY----LFAGPRGTGKTSVAKLLAKA--VNC 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
            S  G       ++   + +    DVL ID      I  +  + E + Y          +
Sbjct: 67  LSPEGVEPCNRCEVCREINDGSTMDVLEIDAASNRGIDEIRELRERVRYAPARARYKVYI 126

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++   +    I ATT    L   +  R       +    E +
Sbjct: 127 IDEVHMLTTEAFNALLKTLEEPPAHALFILATTEPHRLPATIVSRCQ-RFDFHRLTPEQI 185

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              +Q      G+     A   +A  + G  R A  LL +    A       +  ++   
Sbjct: 186 LERLQAVCTAMGVEAEPAALRLLARLAEGGLRDALSLLDQSLAMAGDRLDAQVVADLLGL 245

Query: 249 A 249
           A
Sbjct: 246 A 246


>gi|229587366|ref|YP_002860404.1| DNA polymerase III, subunits gamma and tau [Clostridium botulinum
           Ba4 str. 657]
 gi|229260150|gb|ACQ51187.1| DNA polymerase III, subunits gamma and tau [Clostridium botulinum
           Ba4 str. 657]
          Length = 472

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/236 (18%), Positives = 88/236 (37%), Gaps = 27/236 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPR  ++  GQ     N K+ +   +         LF G  G GKTT A++ A+ +  + 
Sbjct: 7   RPRFFKDVVGQ---GENTKILLNQIRT-GHIGHAYLFCGNRGSGKTTTARIFAKAVNQHN 62

Query: 83  R--STSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLD 135
           +        ++K  D    +      D++ +D      I  +  I+E+  Y   E     
Sbjct: 63  KNGEPLDNELSKKIDAGNCI------DIVELDAASHNGIEDIRNIIEQAQYAPSECKYRV 116

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             + ++        I ATT    L   +  R          ++ 
Sbjct: 117 FIIDEVHMLSISAVNAFLKVLEEPPKNVIFILATTDPQKLPITVLSRCQ-RFDFKRIDVT 175

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           D+   ++   +   + + +++   I++ + G  R A  +L +VR   E+ ++   T
Sbjct: 176 DIFNRLKYICEHEKIKIDNKSLKLISIVADGAMRDAISILDQVRTMEEITYSNVTT 231


>gi|148244580|ref|YP_001219274.1| DNA polymerase III tau and gamma subunit [Candidatus
           Vesicomyosocius okutanii HA]
 gi|146326407|dbj|BAF61550.1| DNA polymerase III tau and gamma subunit [Candidatus
           Vesicomyosocius okutanii HA]
          Length = 523

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 45/253 (17%), Positives = 84/253 (33%), Gaps = 29/253 (11%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP +  E  GQ      L   + A           LF G  G+GKT++A++ A+ +
Sbjct: 9   ARKYRPHSFTELVGQTNTKKTLINALNA----NNVHHGFLFTGTRGVGKTSIARIFAKSI 64

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAMED 131
                 +S P     G  +  +   + + +  I+        +  +  I+E   Y   ++
Sbjct: 65  NCEKGVSSTP----CGKCSTCIEIDKGQSIDLIELDAASHTGVDNMRSILENTQYMPSKN 120

Query: 132 FQLDLMVGEGPS--ARSVKINLS-------RFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E       S    L            + ATT    L   +  R  +   L  
Sbjct: 121 RYKIYLIDEVHMLSNSSFNALLKTLEEPPEHVKFLLATTNPQKLPVTILSRC-LQFTLQQ 179

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
              +++   ++       L+  + A  +IA   +G+ R A  LL    D +      T+T
Sbjct: 180 LTHDEILGQLKFIMDSEALSYEELALSQIANFGKGSMRDALSLL----DQSISYGKGTVT 235

Query: 243 REIADAALLRLAI 255
                  L  +  
Sbjct: 236 SADIKTMLGLVHH 248


>gi|84997856|ref|XP_953649.1| metalloprotease/cell division cycle protein (FtsH ) [Theileria
           annulata]
 gi|65304646|emb|CAI72971.1| metalloprotease/cell division cycle protein (FtsH homologue),
           putative [Theileria annulata]
          Length = 805

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 60/247 (24%), Positives = 94/247 (38%), Gaps = 27/247 (10%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAR 76
           P   ++  G  EA  +++  ++  K         A+    +L VGPPG GKT LA+ VA 
Sbjct: 227 PVHFKDILGIDEAKEDVQEIVKFIKQPFLYKKVGAKVPKGILLVGPPGTGKTMLAKAVAT 286

Query: 77  ELGVNFRSTSGPVI------AKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPA 128
           E G+ F  TSGP          A  + AL          ++FIDEI  +           
Sbjct: 287 ETGIPFIYTSGPEFVEIYVGQGAQRIRALFQKARKIAPCIIFIDEIDAVGSKRATGSLSG 346

Query: 129 ME---DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183
                D  L+ ++ E              T++AAT R+  L   L    RF   + +   
Sbjct: 347 QNREHDQTLNQLLVEMDGFNVSTG----ITILAATNRLSALDRALLRPGRFDRVVHIPLP 402

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            I+  + I+Q   K            E+   S+ TP  +G  L+ + + A +   K    
Sbjct: 403 SIQGREEILQHYLKDVNYNKESINVKEL---SKITPGYSGADLKNLVNEAALITVKQDRL 459

Query: 244 EIADAAL 250
            +  A L
Sbjct: 460 MVELADL 466


>gi|319778426|ref|YP_004129339.1| DNA polymerase III subunits gamma and tau [Taylorella equigenitalis
           MCE9]
 gi|317108450|gb|ADU91196.1| DNA polymerase III subunits gamma and tau [Taylorella equigenitalis
           MCE9]
          Length = 380

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/242 (19%), Positives = 76/242 (31%), Gaps = 55/242 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPR      GQ      L   ++      E L H  LF G  G+GKTTLA+++A+ L   
Sbjct: 11  RPRDFSSLVGQDHVVKALTHALD-----TERLHHAWLFTGTRGVGKTTLARILAKSLNCE 65

Query: 82  ------------------------FRSTSGPVIAKAGDLAALLTNL------EDRDVLFI 111
                                   +            D+AAL+             V  I
Sbjct: 66  TGITSKPCGVCRACTQIDEGRFVDYMEFDAASNRGVEDMAALIEQAIYAPSVGRFKVYTI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      +   +E+                         I ATT    +   + 
Sbjct: 126 DEVHMLSGTAFNAMLKTLEE------------------PPPHVKFILATTDPQKIPITVV 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L     E + + ++   +   ++    A   +A  + G+ R A  +  +   
Sbjct: 168 SRC-LQFNLKNMSPEQIVSHLEYILEKESVSYEKSALKLLAQAASGSMRDALSITDQAIA 226

Query: 232 FA 233
           F+
Sbjct: 227 FS 228


>gi|194763220|ref|XP_001963731.1| GF21175 [Drosophila ananassae]
 gi|190618656|gb|EDV34180.1| GF21175 [Drosophila ananassae]
          Length = 352

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 57/326 (17%), Positives = 102/326 (31%), Gaps = 39/326 (11%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           S         +   RPR +++   Q E  + L+  +E        L ++L  GPPG GKT
Sbjct: 22  SERRKPPTLWVEKYRPRNVDDVVEQSEVVAVLRKCVE-----GGDLPNMLLYGPPGTGKT 76

Query: 69  TLAQVVAR------------ELGVNFRSTSGPVIAKAG---DLAALLTNLEDRD-----V 108
           +      R            EL  +       V  K      LAA     + R      +
Sbjct: 77  STILAAGRQIFGDMYKNRILELNASDERGINVVRTKIKTFSQLAASSVRPDGRPCPPFKI 136

Query: 109 LFIDEIHRLSIIVEEILYPAM--EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
           + +DE   ++   +  L   M  E       +     +R +    SR +     +  G  
Sbjct: 137 VILDEADSMTHAAQSALRRTMEKESQSTRFCLICNYVSRIIVPITSRCSKFRFKSL-GEE 195

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
               + +F         + +  K+IV+        A+T   +C        T   A  L 
Sbjct: 196 KVIARLQFICEQEGVQIDPDAYKSIVKISGGDLRRAITTLQSCFRLKGPEHTINTA-DLF 254

Query: 227 RR--------VRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
                     + D+ EV  +     E  +  +  +        Q+  +++  I  + G  
Sbjct: 255 EMSGVIPDYYLDDYLEVCRSG--DYERLEKFVRDIGYSAYSVGQMMEQFVEFIVNHPGLN 312

Query: 279 PVGIETISAGLSEPRDAIEDLIEPYM 304
                 I   L E    ++D    Y+
Sbjct: 313 DPQKAKICDKLGECCFRLQDGASEYL 338


>gi|24658770|ref|NP_726263.1| CG3499 [Drosophila melanogaster]
 gi|15291271|gb|AAK92904.1| GH14313p [Drosophila melanogaster]
 gi|23240115|gb|AAM71132.2| CG3499 [Drosophila melanogaster]
 gi|220945266|gb|ACL85176.1| CG3499-PB [synthetic construct]
 gi|220954998|gb|ACL90042.1| CG3499-PB [synthetic construct]
          Length = 736

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 60/271 (22%), Positives = 100/271 (36%), Gaps = 24/271 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T E+  G  EA   LK  +E  K+         +    VL VGPPG GKT LA+ VA E 
Sbjct: 298 TFEDVKGCDEAKQELKEVVEFLKSPEKFSNLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 357

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F   +GP          A  +  L    + R   V+FIDEI  +       +     
Sbjct: 358 KVPFFHAAGPEFDEVLVGQGARRVRDLFKAAKARAPCVIFIDEIDSVGAKRTNSVLHPYA 417

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
           +  ++ ++ E               ++ AT R   L   L    RF + + ++  +    
Sbjct: 418 NQTINQLLSEMDGFHQNAG----VIVLGATNRRDDLDQALLRPGRFDVEVMVSTPDFTGR 473

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAM-RSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           K I+     LT +   +     +A   S  T      ++ +    A +  A+T++ +  +
Sbjct: 474 KEIL--SLYLTKILHDEIDLDMLARGTSGFTGADLENMINQAALRAAIDGAETVSMKHLE 531

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
            A  ++ +      +L       I     GG
Sbjct: 532 TARDKVLMGPERKARLPDEEANTITAYHEGG 562


>gi|254228481|ref|ZP_04921907.1| DNA polymerase III, subunits gamma and tau, putative [Vibrio sp.
           Ex25]
 gi|262393658|ref|YP_003285512.1| DNA polymerase III subunits gamma and tau [Vibrio sp. Ex25]
 gi|151939069|gb|EDN57901.1| DNA polymerase III, subunits gamma and tau, putative [Vibrio sp.
           Ex25]
 gi|262337252|gb|ACY51047.1| DNA polymerase III subunits gamma and tau [Vibrio sp. Ex25]
          Length = 701

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 86/249 (34%), Gaps = 25/249 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP   ++  GQ    + L    E A A+       LF G  G+GKT++ ++ A+  G+N 
Sbjct: 11  RPNQFDQVVGQKHVLTAL----ENALAQNRLHHAYLFSGTRGVGKTSIGRLFAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D+L ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGKCDTCREIDEGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++        + ATT    L   +  R  +   L    ++D+
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRC-LQFHLKPISVDDI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              +        ++   +A   I+  + G+ R A  L     D A       +  +I   
Sbjct: 184 HQQLDYILGQEQVSAEPKALGMISHAADGSMRDALSL----TDQAIALGNGAVQTDIVSH 239

Query: 249 ALLRLAIDK 257
            L  +  D+
Sbjct: 240 MLGTIDTDQ 248


>gi|256545930|ref|ZP_05473285.1| cell division protease FtsH family protein 3 [Anaerococcus
           vaginalis ATCC 51170]
 gi|256398352|gb|EEU11974.1| cell division protease FtsH family protein 3 [Anaerococcus
           vaginalis ATCC 51170]
          Length = 695

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 57/215 (26%), Positives = 88/215 (40%), Gaps = 28/215 (13%)

Query: 25  RTLEEFTGQVEACSNLKVFI------EAAKARAEALD-HVLFVGPPGLGKTTLAQVVARE 77
           +T  +  GQ EA  +L   +      +  K     L   VL VGPPG GKT LA+ VA E
Sbjct: 170 KTFADVAGQEEAKDSLNEVVDFLHGPQKYKEIGAVLPKGVLLVGPPGTGKTLLAKAVAGE 229

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
             V F S SG           A  +  L    +++   ++FIDEI  +    +   Y   
Sbjct: 230 ANVPFFSISGSEFVEMFVGMGASKVRDLFKQAKEKAPCIVFIDEIDAIGKKRDVSGYSGN 289

Query: 130 EDFQLD----LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183
           ++ +      L   +G  A    + LS      AT R  +L   L    RF   +++   
Sbjct: 290 DEREQTLNQLLNEMDGFDATEGVVLLS------ATNRPEILDPALTRPGRFDRRVQVELP 343

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGT 218
           +++  + I++  AK       +    EIA R+ GT
Sbjct: 344 DLKGREDILKVHAKKIKRE-DEIDYEEIAKRTAGT 377


>gi|206560262|ref|YP_002231026.1| DNA polymerase III subunits gamma and tau [Burkholderia cenocepacia
           J2315]
 gi|198036303|emb|CAR52199.1| DNA polymerase III subunit gamma [Burkholderia cenocepacia J2315]
          Length = 787

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 84/229 (36%), Gaps = 27/229 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+      GQ      L   ++  +     L H  LF G  G+GKTTL+++ A+ L   
Sbjct: 11  RPKDFASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAMEDFQL 134
              TS P     G   A     E R V +++        +  ++ ++E  +Y  ++    
Sbjct: 66  TGVTSQP----CGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             M+ E             ++++        I ATT    +   +  R  +   L     
Sbjct: 122 VYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPA 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
             + + ++R      +    +A   +A  ++G+ R A  L  +   ++ 
Sbjct: 181 GHIVSHLERILGEERITFEPQALRLLARAAQGSMRDALSLTDQAIAYSA 229


>gi|94497479|ref|ZP_01304049.1| DNA polymerase III, subunits gamma and tau [Sphingomonas sp. SKA58]
 gi|94423110|gb|EAT08141.1| DNA polymerase III, subunits gamma and tau [Sphingomonas sp. SKA58]
          Length = 538

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 52/256 (20%), Positives = 87/256 (33%), Gaps = 22/256 (8%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           +S +           RPR+  E  GQ      L   I     R       L  G  G+GK
Sbjct: 1   MSDSPQPYRVLARKYRPRSFSELIGQDAMVQTLGNAIR----RGRLAHAFLMTGVRGVGK 56

Query: 68  TTLAQVVARELGV-NFRSTSGPVIAKAGDLAALLTNLEDR--DVLFID-----EIHRLSI 119
           T+ A+++A+ L         GP I   G         E R  DV+ +D      +  +  
Sbjct: 57  TSTARLIAKALNCVGPDGQGGPTIDPCGQCEPCKAIAEGRHIDVVEMDAASHTGVDDVRE 116

Query: 120 IVEEILYPAMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           I+E + Y A+       ++ E             ++++   +    + ATT V  +   +
Sbjct: 117 IIEAVRYAAVSARYKIYIIDEVHMLSKNAFNALLKTLEEPPAHVKFLFATTEVNKVPVTV 176

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
             R      L     E L T      +   +A   EA   IA  + G+ R    +L +  
Sbjct: 177 LSRCQ-RFDLRRIPAELLATHFTHVVEAESVAAEPEALALIAQAAEGSARDGLSILDQAI 235

Query: 231 DFAEVAHAKTITREIA 246
             AE+    ++     
Sbjct: 236 AHAEMDDGPSLVTAAQ 251


>gi|53804576|ref|YP_113790.1| DNA polymerase III, gamma and tau subunits, programmed frameshift
           [Methylococcus capsulatus str. Bath]
 gi|53758337|gb|AAU92628.1| DNA polymerase III, gamma and tau subunits [Methylococcus
           capsulatus str. Bath]
          Length = 547

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 77/225 (34%), Gaps = 29/225 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP    E  GQ      L   +EA +         LF G  G+GKTTLA+++A+ L    
Sbjct: 11  RPHNFTEVVGQEHVVKALTHALEAGRMHHAY----LFTGTRGVGKTTLARILAKALNCED 66

Query: 83  RSTSGP----VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP-----AMEDFQ 133
           R  + P    +I +  D    +      D++ +D   R  +     L         +   
Sbjct: 67  RQGANPCGRCLICREVDEGRFI------DLIEVDAASRTKVEDTRDLLDNVQYAPNQGRY 120

Query: 134 LDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
              ++ E             ++++        + ATT    +   +  R  +   L    
Sbjct: 121 KVYLIDEVHMLSGHSFNALLKTLEEPPPHVKFLLATTDPQKIPVTVLSRC-LQFNLKRLT 179

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
            E ++  + +      +     A   +A  ++G+ R    LL + 
Sbjct: 180 PEQIRAQMAQILASESIDFEPAATKALARAAQGSMRDGLSLLDQA 224


>gi|254252241|ref|ZP_04945559.1| DNA polymerase III [Burkholderia dolosa AUO158]
 gi|124894850|gb|EAY68730.1| DNA polymerase III [Burkholderia dolosa AUO158]
          Length = 472

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 85/229 (37%), Gaps = 27/229 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+      GQ      L   ++  +     L H  LF G  G+GKTTL+++ A+ L   
Sbjct: 11  RPKDFASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAMEDFQL 134
              TS P     G   A     E R V +++        +  ++ ++E  +Y  ++    
Sbjct: 66  TGVTSQP----CGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             M+ E             ++++        I ATT    +   +  R  +   L     
Sbjct: 122 VYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPA 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
             + + ++R      +A   +A   +A  ++G+ R A  L  +   ++ 
Sbjct: 181 GHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSA 229


>gi|322501204|emb|CBZ36283.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 354

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 52/241 (21%), Positives = 77/241 (31%), Gaps = 51/241 (21%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA- 75
             +   RPRTL E   Q EA   L+    A       + H LF GPPG GKTT    VA 
Sbjct: 26  PWVEKYRPRTLAEVEAQDEAVGALR----ACLKEGANMPHFLFHGPPGTGKTTSILAVAH 81

Query: 76  ------------RELGVNFRSTSGPVIAKAGDLAALLTNLE---------------DRDV 108
                       REL  +       V  K    A    +                    +
Sbjct: 82  ELFGPDYIRSRVRELNASDDRGINVVREKVKIFAQGAVSSSGSSVTQSDGKVYPVPPFKL 141

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           + +DE   L    +  L   MEDF                 +++RF        V  + +
Sbjct: 142 IILDEADALLPDAQAALRRMMEDFS----------------DVTRF--CILCNYVSRIID 183

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
           P+  R     R        L   ++  A+  G+ ++  +   +   S G  R+A   L+ 
Sbjct: 184 PIASRCA-KYRFKPLVKSALYHRIEYVAQAEGITLSPASLHALDTVSGGDLRLAIMHLQS 242

Query: 229 V 229
            
Sbjct: 243 A 243


>gi|326934254|ref|XP_003213207.1| PREDICTED: lon protease homolog, mitochondrial-like [Meleagris
           gallopavo]
          Length = 815

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 73/192 (38%), Gaps = 33/192 (17%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI  ++ R      +L F GPPG+GKT++A+ +AR L   +   S
Sbjct: 352 EDHYGMDDVKKRILEFIAVSQLRGSTQGKILCFYGPPGVGKTSIARSIARALNREYFRFS 411

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ ++    +        
Sbjct: 412 VGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLILIDEVDKIGRGYQGDPSSALL 471

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V ++LS+   I        +  PL+DR  + I ++ 
Sbjct: 472 ELLDPEQNSNFLD-------HYLDVPVDLSKVLFICTANVTETIPEPLRDRMEV-INVSG 523

Query: 183 YEIEDLKTIVQR 194
           Y  E+   I +R
Sbjct: 524 YVAEEKLAIAER 535


>gi|298675912|ref|YP_003727662.1| replication factor C [Methanohalobium evestigatum Z-7303]
 gi|298288900|gb|ADI74866.1| Replication factor C [Methanohalobium evestigatum Z-7303]
          Length = 345

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 59/335 (17%), Positives = 115/335 (34%), Gaps = 86/335 (25%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           +D      +P+ L++  G   + + LK  +++       L H++F GP   GK++ A  +
Sbjct: 2   KDIWTVKYKPKKLDDIAGNEFSINTLKKILKS-----NNLPHLIFQGPVNSGKSSTAFAL 56

Query: 75  ARE-----LGVNFRSTSG-------------------------------PVIAKAGDLAA 98
           A E        NF   +                                 V++    +  
Sbjct: 57  ANELYGKHYENNFTYFNASDFFDQGKRYLVRDRRFARIIGTQDPKKIRMSVLSIFKQIIN 116

Query: 99  LLTNLE----DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRF 154
              ++     D  ++FID+   L    ++ L   ME +                   S  
Sbjct: 117 EYASMRPIDSDYKIIFIDDAQSLDSSSQQALRRIMEKYT------------------STC 158

Query: 155 TLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMR 214
             I +TT+   L  PL+ R G+ +   +   ++LK  +Q  A+   +  T++    +   
Sbjct: 159 RFILSTTQPSKLIQPLKSR-GLRLFFTYVTEKELKNYIQPIAENEDIQFTEDGLEALWYV 217

Query: 215 SRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARN 274
           SRG    A    +     ++        ++I +A L  +  +K   DQL           
Sbjct: 218 SRGNISRALTTTQIAYLHSKDEDTNISLQDIYEAVLNEI-PEKENIDQL----------- 265

Query: 275 FGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGF 309
                      SA +++  D    +I+  +I+ GF
Sbjct: 266 ----------FSAAVNKDIDTARKIIDNLLIESGF 290


>gi|194866271|ref|XP_001971841.1| GG14218 [Drosophila erecta]
 gi|190653624|gb|EDV50867.1| GG14218 [Drosophila erecta]
          Length = 331

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 53/283 (18%), Positives = 93/283 (32%), Gaps = 40/283 (14%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M +   +   +       I   RP   +E  G  +  + L VF     A      +++  
Sbjct: 1   MPEEPRITVDDKRSHLPWIEKYRPAKFKEIVGNEDTVARLSVFATQGNA-----PNIIIA 55

Query: 61  GPPGLGKTTLAQVVAR------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDR 106
           GPPG+GKTT  Q +AR            EL  +       V  K    A     L     
Sbjct: 56  GPPGVGKTTTIQCLARILLGDSYKEAVLELNASNERGIDVVRNKIKMFAQQKVTLPRGRH 115

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
            ++ +DE   ++   ++ L   ME +                   +RF L   T+    +
Sbjct: 116 KIVILDEADSMTEGAQQALRRTMEIYSST----------------TRFALACNTSE--KI 157

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA-GRL 225
             P+Q R  +       + + L  +++  AK   L  T++    I   ++G  R     L
Sbjct: 158 IEPIQSRCAMLRFTKLSDAQVLAKLIE-VAKWEKLNYTEDGLEAIVFTAQGDMRQGLNNL 216

Query: 226 LRRVRDFAEVAHAKTI-TREIADAALLRLAIDKMGFDQLDLRY 267
               + F ++         +     LL   I     + +   Y
Sbjct: 217 QSTAQGFGDITAENVFKVCDEPHPKLLEEMIHHCAANDIHKAY 259


>gi|325522361|gb|EGD00963.1| DNA polymerase III subunits gamma and tau [Burkholderia sp. TJI49]
          Length = 381

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 84/229 (36%), Gaps = 27/229 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+      GQ      L   ++  +     L H  LF G  G+GKTTL+++ A+ L   
Sbjct: 11  RPKDFASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAMEDFQL 134
              TS P     G   A     E R V +++        +  ++ ++E  +Y  ++    
Sbjct: 66  TGVTSQP----CGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             M+ E             ++++        I ATT    +   +  R  +   L     
Sbjct: 122 VYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPA 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
             + + ++R      +    +A   +A  ++G+ R A  L  +   ++ 
Sbjct: 181 GHIVSHLERILGEEQITFEPQALRLLARAAQGSMRDALSLTDQAIAYSA 229


>gi|282896586|ref|ZP_06304604.1| AAA ATPase, central region protein [Raphidiopsis brookii D9]
 gi|281198528|gb|EFA73411.1| AAA ATPase, central region protein [Raphidiopsis brookii D9]
          Length = 615

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 58/227 (25%), Positives = 88/227 (38%), Gaps = 27/227 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVARE 77
           +L++  G  +    LK  I     R + L          VL VGPPG GKT  A+ +A E
Sbjct: 93  SLKDIGGLSQVVKELKELIAIPLKRPDLLAKLGLEPTHGVLLVGPPGTGKTLTARALAEE 152

Query: 78  LGVNFRSTSGP-VIAK-----AGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
           LGVN+ +  GP VI+K        L  +          ++FIDEI  L+         A+
Sbjct: 153 LGVNYIALVGPEVISKYYGEAEQKLRGIFEKAAKNAPCIIFIDEIDSLAPDR-----SAV 207

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
           E      +V +         +     ++AAT R   L   L+   RF   I+    +   
Sbjct: 208 EGEVEKRLVAQLLGLMDGFSHTPGVIVLAATNRPDHLDPALRRPGRFDREIQFRIPDANG 267

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
            K I+Q    +   A+  +   ++   S  T    G  L+ V   A 
Sbjct: 268 RKEILQ----VLTRAMPLDETVDLEFISDRTVGFVGADLKAVCQKAA 310



 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/110 (30%), Positives = 46/110 (41%), Gaps = 16/110 (14%)

Query: 28  EEFTGQVEACSNLKVFIEAA--------KARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           E+  G       L+  +E A        + +A A   +L  GPPG GKT LA+ VA +  
Sbjct: 361 EDIGGLEAIKQTLRESVEGALLYPELYRQTKAVAPRGILLWGPPGTGKTLLAKAVASQAR 420

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIV 121
            NF   +GP +      A    +  L       D  V+FIDEI  L+   
Sbjct: 421 ANFIGVNGPELLTRWVGASEQAVRELFAKARQADPCVIFIDEIDTLAPAR 470


>gi|20093446|ref|NP_613293.1| replication factor C (ATPase involved in DNA replication) intein
          containing [Methanopyrus kandleri AV19]
 gi|42559498|sp|Q8TZC4|RFCS_METKA RecName: Full=Replication factor C small subunit; Short=RFC small
          subunit; AltName: Full=Clamp loader small subunit;
          Contains: RecName: Full=Mkn RFC intein
 gi|19886265|gb|AAM01223.1| Replication factor C (ATPase involved in DNA replication) intein
          containing [Methanopyrus kandleri AV19]
          Length = 635

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 6/81 (7%)

Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
          E   +   RP+ L++   Q      LK ++     R + + ++LF GPPG GKTT A  +
Sbjct: 10 EIPWVEKYRPKRLDDIVDQEHVVERLKAYV----NRGD-MPNLLFAGPPGTGKTTAALCL 64

Query: 75 ARE-LGVNFRSTSGPVIAKAG 94
          ARE  G ++R     + A   
Sbjct: 65 ARELFGEHWRDNFLELNASVS 85



 Score = 38.9 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 71/221 (32%), Gaps = 28/221 (12%)

Query: 92  KAGDLAALLTNLEDR-DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN 150
           K  + A        R  ++F+DE   L+   ++ L   ME +                  
Sbjct: 399 KVKNFARTRPMGGARFKIIFLDEADNLTRDSQQALRRIMEMYSDA--------------- 443

Query: 151 LSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACE 210
                 I A      + +P+Q R  +  +        +K  +++ A+  G+ +T++A   
Sbjct: 444 ---CRFILAANYSSAIIDPIQSRC-VVFKFTKLPESAIKERLRKIAESEGVEITEDALDA 499

Query: 211 IAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR----EIADAALLRLAIDKMGFDQLDLR 266
           I   S G  R A  +L+            T+ +       +     +     G  +    
Sbjct: 500 IVYVSEGDMRRAINVLQAAAALGREIDEDTVFQIAATARPEEVREMIHHAWNGDFERARE 559

Query: 267 YLTMIARNFGGGPVGIETISAGLSE--PRDAIEDLIEPYMI 305
            L  +   +  G  G + +     E    D I +   P ++
Sbjct: 560 LLHELLTRY--GMSGEDVVRQVHREIFDMDEIPEEAIPELV 598


>gi|113474658|ref|YP_720719.1| DNA polymerase III s gamma and tau [Trichodesmium erythraeum
           IMS101]
 gi|110165706|gb|ABG50246.1| DNA polymerase III, subunits gamma and tau [Trichodesmium
           erythraeum IMS101]
          Length = 695

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 81/232 (34%), Gaps = 19/232 (8%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +      RP+T  +  GQ      L   I   +         LF GP G GKT+ A+V+A
Sbjct: 4   EPLHHKYRPQTFADLVGQDVIAQTLTNAIHTKRIA----PAYLFTGPRGTGKTSSARVLA 59

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAME 130
           + L         P      ++   +T     DV+ ID      +  +  ++E   +  ++
Sbjct: 60  KSLNCLSYDHPTPSPCGTCNVCVGITKGSTLDVIEIDAASNTGVDNIRELIERSQFAPVQ 119

Query: 131 DFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
                 ++ E             ++++        I ATT    +   +  R        
Sbjct: 120 CRYKVYVIDEVHMLSVSAFNALLKTLEEPPKGVVFILATTDPQRVLATIISRCQ-RFDFR 178

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
              +E +   +   A    + +T EA   IA  ++G  R A  LL ++   A
Sbjct: 179 RIPLEAMVKHLHHIAIEEKIDITTEAIQMIAQIAQGGLRDAESLLDQLSLLA 230


>gi|195346897|ref|XP_002039991.1| GM15603 [Drosophila sechellia]
 gi|194135340|gb|EDW56856.1| GM15603 [Drosophila sechellia]
          Length = 739

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 56/245 (22%), Positives = 93/245 (37%), Gaps = 24/245 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T E+  G  EA   LK  +E  K+         +    VL VGPPG GKT LA+ VA E 
Sbjct: 301 TFEDVKGCDEAKQELKEVVEFLKSPEKFSNLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 360

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F   +GP          A  +  L    + R   V+FIDEI  +       +     
Sbjct: 361 KVPFFHAAGPEFDEVLVGQGARRVRDLFKAAKARAPCVIFIDEIDSVGAKRTNSVLHPYA 420

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
           +  ++ ++ E               ++ AT R   L   L    RF + + ++  +    
Sbjct: 421 NQTINQLLSEMDGFHQNAG----VIVLGATNRRDDLDQALLRPGRFDVEVMVSTPDFTGR 476

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAM-RSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           K I+     LT +   +     +A   S  T      ++ +    A +  A+T++ +  +
Sbjct: 477 KEIL--SLYLTKILHDEIDLDMLARGTSGFTGADLENMINQAALRAAIDGAETVSMKHLE 534

Query: 248 AALLR 252
            A  +
Sbjct: 535 TARDK 539


>gi|17158706|ref|NP_478217.1| DNA polymerase III gamma and tau subunits [Nostoc sp. PCC 7120]
 gi|17134655|dbj|BAB77213.1| DNA polymerase III gamma and tau subunits [Nostoc sp. PCC 7120]
          Length = 429

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 45/141 (31%), Gaps = 36/141 (25%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+ L E  GQ       +  I A  A  +     LF GP G GKT+ A+++A+ L    
Sbjct: 10  RPQILSEVIGQEHIV---RTLINAI-AFQKIAPAYLFSGPKGTGKTSTARIIAKSLNCQS 65

Query: 83  R--------------------------STSGPVIAKAGDLAALLTNLE------DRDVLF 110
                                             +    +  L++  +         +  
Sbjct: 66  SNEPTTKPCGECNSCKGITASSSVDVTELDAASNSGVELIRELISTTQFAPVESRFKIFI 125

Query: 111 IDEIHRLSIIVEEILYPAMED 131
           IDE H LS    + L   +E 
Sbjct: 126 IDECHALSSQSWQALLKTIES 146


>gi|76808592|ref|YP_333768.1| DNA polymerase III subunits gamma and tau [Burkholderia
           pseudomallei 1710b]
 gi|254259031|ref|ZP_04950085.1| DNA polymerase III, subunits gamma and tau [Burkholderia
           pseudomallei 1710a]
 gi|76578045|gb|ABA47520.1| DNA polymerase III subunit gamma [Burkholderia pseudomallei 1710b]
 gi|254217720|gb|EET07104.1| DNA polymerase III, subunits gamma and tau [Burkholderia
           pseudomallei 1710a]
          Length = 822

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 85/229 (37%), Gaps = 27/229 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+      GQ      L   ++  +     L H  LF G  G+GKTTL+++ A+ L   
Sbjct: 11  RPKDFASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAMEDFQL 134
              TS P     G   A     E R V +++        +  ++ ++E  +Y  ++    
Sbjct: 66  TGVTSQP----CGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             M+ E             ++++        I ATT    +   +  R  +   L     
Sbjct: 122 VYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPA 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
             + + ++R      +A   +A   +A  ++G+ R A  L  +   ++ 
Sbjct: 181 GHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSA 229


>gi|237752504|ref|ZP_04582984.1| recombination factor protein RarA [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229375993|gb|EEO26084.1| recombination factor protein RarA [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 336

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 53/271 (19%), Positives = 97/271 (35%), Gaps = 62/271 (22%)

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLE---DRDVLFIDEIHRLSIIVEEILYPA 128
            ++A+ +   F S +     K  DL  +L N +    + ++FIDE+HRL+   +E+L P 
Sbjct: 1   MLIAKTMDYPFYSLNATNF-KTEDLRNILKNYQNTLQKPIIFIDEVHRLNKSQQELLLPI 59

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           ME+  + L++G                          LT  ++ R  +         +DL
Sbjct: 60  MENH-IALILGASTENPYF-----------------ALTQAIRSRS-MVFEFKPLNKQDL 100

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           + I++        A+  E    +   S G  R    LL    D A+              
Sbjct: 101 EQILE------PFALEKEVQEFLISTSGGDARAMLNLL----DCAQSTQLP--------- 141

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIET----ISAGLSEPRDAIEDLIEPYM 304
                         L++  L  + +    G   ++T     SA +   R + E+    Y+
Sbjct: 142 --------------LNVELLKSLRKTSLSGTSELDTHYDLTSAMIKSIRGSDENAAIYYL 187

Query: 305 --IQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
             + QG        R L+ +A + +G   P+
Sbjct: 188 ACLIQGGENPEFIARRLVILASEDIGNANPN 218


>gi|213621460|ref|ZP_03374243.1| Holliday junction DNA helicase B [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 34

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/32 (62%), Positives = 23/32 (71%)

Query: 302 PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
           PY+IQQGF+QRTPRGR+    AW H GI  P 
Sbjct: 1   PYLIQQGFLQRTPRGRMATVRAWNHFGITPPE 32


>gi|219684938|ref|ZP_03539879.1| cell division protein FtsH [Borrelia garinii PBr]
 gi|219671676|gb|EED28732.1| cell division protein FtsH [Borrelia garinii PBr]
          Length = 639

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 59/270 (21%), Positives = 98/270 (36%), Gaps = 33/270 (12%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ E    L+  +E  K         A+    VL VG PG GKT LA+ VA E 
Sbjct: 170 TFKDVAGQEEVKQELREVVEFLKNPKKFEKIGAKIPKGVLLVGSPGTGKTLLAKAVAGEA 229

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV+F   SG       V   A  +  L  N       ++FIDE+  +       L    +
Sbjct: 230 GVSFFHMSGSDFVEMFVGVGASRVRDLFDNARKNSPCIIFIDELDAVGRSRGAGLGGGHD 289

Query: 131 DFQLDL------MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNF 182
           + +  L      M G G     +        ++AAT R  +L + L    RF   + ++ 
Sbjct: 290 EREQTLNQLLVEMDGFGTHVNVI--------VMAATNRPDVLDSALLRPGRFDRQVTVSL 341

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            +I++ + I+   +  T L+               +      L+      A   +   I 
Sbjct: 342 PDIKEREAILNIHSSKTKLSKDINLQVIARATPGASGADLANLINEGALIAARNNQDEIL 401

Query: 243 REIADAALLR--LAIDKMGFDQLDLRYLTM 270
            +  + A  +  + + K      D + L  
Sbjct: 402 MKDMEEARDKILMGVAKKSMTITDRQKLET 431


>gi|170733187|ref|YP_001765134.1| DNA polymerase III subunits gamma and tau [Burkholderia cenocepacia
           MC0-3]
 gi|169816429|gb|ACA91012.1| DNA polymerase III, subunits gamma and tau [Burkholderia
           cenocepacia MC0-3]
          Length = 793

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 84/229 (36%), Gaps = 27/229 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+      GQ      L   ++  +     L H  LF G  G+GKTTL+++ A+ L   
Sbjct: 11  RPKDFASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAMEDFQL 134
              TS P     G   A     E R V +++        +  ++ ++E  +Y  ++    
Sbjct: 66  TGVTSQP----CGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             M+ E             ++++        I ATT    +   +  R  +   L     
Sbjct: 122 VYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPA 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
             + + ++R      +    +A   +A  ++G+ R A  L  +   ++ 
Sbjct: 181 GHIVSHLERILGEEQITFEPQALRLLARAAQGSMRDALSLTDQAIAYSA 229


>gi|53719132|ref|YP_108118.1| DNA polymerase III subunits gamma and tau [Burkholderia
           pseudomallei K96243]
 gi|52209546|emb|CAH35499.1| DNA polymerase III subunit gamma [Burkholderia pseudomallei K96243]
          Length = 825

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 85/229 (37%), Gaps = 27/229 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+      GQ      L   ++  +     L H  LF G  G+GKTTL+++ A+ L   
Sbjct: 11  RPKDFASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAMEDFQL 134
              TS P     G   A     E R V +++        +  ++ ++E  +Y  ++    
Sbjct: 66  TGVTSQP----CGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             M+ E             ++++        I ATT    +   +  R  +   L     
Sbjct: 122 VYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPA 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
             + + ++R      +A   +A   +A  ++G+ R A  L  +   ++ 
Sbjct: 181 GHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSA 229


>gi|53723573|ref|YP_103021.1| DNA polymerase III subunits gamma and tau [Burkholderia mallei ATCC
           23344]
 gi|121598928|ref|YP_993170.1| DNA polymerase III subunits gamma and tau [Burkholderia mallei
           SAVP1]
 gi|124386554|ref|YP_001026054.1| DNA polymerase III subunits gamma and tau [Burkholderia mallei NCTC
           10229]
 gi|126448303|ref|YP_001080677.1| DNA polymerase III subunits gamma and tau [Burkholderia mallei NCTC
           10247]
 gi|254178396|ref|ZP_04885051.1| DNA polymerase III, subunits gamma and tau [Burkholderia mallei
           ATCC 10399]
 gi|52426996|gb|AAU47589.1| DNA polymerase III, subunit gamma, putative [Burkholderia mallei
           ATCC 23344]
 gi|121227738|gb|ABM50256.1| putative DNA polymerase III, subunit gamma [Burkholderia mallei
           SAVP1]
 gi|124294574|gb|ABN03843.1| putative DNA polymerase III, subunit gamma [Burkholderia mallei
           NCTC 10229]
 gi|126241173|gb|ABO04266.1| DNA polymerase III, subunits gamma and tau [Burkholderia mallei
           NCTC 10247]
 gi|160699435|gb|EDP89405.1| DNA polymerase III, subunits gamma and tau [Burkholderia mallei
           ATCC 10399]
          Length = 825

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 85/229 (37%), Gaps = 27/229 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+      GQ      L   ++  +     L H  LF G  G+GKTTL+++ A+ L   
Sbjct: 11  RPKDFASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAMEDFQL 134
              TS P     G   A     E R V +++        +  ++ ++E  +Y  ++    
Sbjct: 66  TGVTSQP----CGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             M+ E             ++++        I ATT    +   +  R  +   L     
Sbjct: 122 VYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPA 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
             + + ++R      +A   +A   +A  ++G+ R A  L  +   ++ 
Sbjct: 181 GHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSA 229


>gi|328772590|gb|EGF82628.1| hypothetical protein BATDEDRAFT_86526 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 340

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 79/231 (34%), Gaps = 38/231 (16%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           + S E   I   RP  L +  G  E  + L++      A+   + +++  G PG+GKTT 
Sbjct: 15  SESPELPWIEKYRPLVLSDIVGNEETVARLQII-----AQEGNMPNIIIAGSPGIGKTTS 69

Query: 71  AQVVARE-----LGVNFRSTSGPVIAKAGDLAALLTNLEDR---------DVLFIDEIHR 116
              +A E             +         +   +     +          ++ +DE   
Sbjct: 70  ILCLAHELLGSAYKEGVLELNASDDRGIEVVRNRIKMFAQKKVTLPPGRHKIVILDEADS 129

Query: 117 LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
           ++   ++ L   ME +                 N +RF    A      +  P+Q R  I
Sbjct: 130 MTSGAQQALRRTMEIYS----------------NTTRF--ALACNLSSKIIEPIQSRCAI 171

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
                  +++ L+ +++   ++  +  T E    I   + G  R A   L+
Sbjct: 172 LRYTRLTDLQLLRRLLE-ICEMENVKHTPEGLSAIIFTADGDMRQAVNNLQ 221


>gi|237812565|ref|YP_002897016.1| DNA polymerase III subunit tau [Burkholderia pseudomallei MSHR346]
 gi|237503016|gb|ACQ95334.1| DNA polymerase III subunit tau [Burkholderia pseudomallei MSHR346]
          Length = 825

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 85/229 (37%), Gaps = 27/229 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+      GQ      L   ++  +     L H  LF G  G+GKTTL+++ A+ L   
Sbjct: 11  RPKDFASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAMEDFQL 134
              TS P     G   A     E R V +++        +  ++ ++E  +Y  ++    
Sbjct: 66  TGVTSQP----CGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             M+ E             ++++        I ATT    +   +  R  +   L     
Sbjct: 122 VYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPA 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
             + + ++R      +A   +A   +A  ++G+ R A  L  +   ++ 
Sbjct: 181 GHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSA 229


>gi|291326691|ref|ZP_06125481.2| DNA polymerase III subunit tau [Providencia rettgeri DSM 1131]
 gi|291313231|gb|EFE53684.1| DNA polymerase III subunit tau [Providencia rettgeri DSM 1131]
          Length = 652

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 52/245 (21%), Positives = 86/245 (35%), Gaps = 31/245 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+   +  GQ    + L     A     + L H  LF G  G+GKTT+A++ A+ L   
Sbjct: 16  RPQKFSDVVGQQHVLTAL-----ANGLTHQRLHHAYLFSGTRGVGKTTIARLFAKGLNCE 70

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILY------PAMEDFQ 133
              T+ P     G  A  L   + R  D++ ID   R  +     L       PA   F+
Sbjct: 71  TGITASP----CGKCANCLEIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFK 126

Query: 134 LDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           + L+               ++++        + ATT    L   +  R  +   L   ++
Sbjct: 127 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDV 185

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
             +   ++       +     A   IA  + G+ R A  L     D A       +T +I
Sbjct: 186 TQISEQLELILNAENIEHDQRARQLIARAADGSLRDALSL----TDQAIAMGQGKVTADI 241

Query: 246 ADAAL 250
               L
Sbjct: 242 VSQML 246


>gi|229816118|ref|ZP_04446433.1| hypothetical protein COLINT_03168 [Collinsella intestinalis DSM
           13280]
 gi|229808302|gb|EEP44089.1| hypothetical protein COLINT_03168 [Collinsella intestinalis DSM
           13280]
          Length = 451

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 51/276 (18%), Positives = 94/276 (34%), Gaps = 37/276 (13%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           ++     RP T E   GQ    S L    E A A        LF GP G GKTT+A+++A
Sbjct: 2   ESLYRKYRPLTFESVVGQQHIVSTL----EHAVAEGRLSHAYLFCGPRGTGKTTMARILA 57

Query: 76  RELGVNFRSTSGPV-------IAKAGDLAALLTNLEDRDVLFIDEIHR----------LS 118
           + L       +               +  A+       DV  +D   R          ++
Sbjct: 58  KALLCEKAEGARAAGATGCNPDGTCPECTAIAEGTHP-DVYELDAASRTGVDNVREEIIN 116

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSA-----RSVKINLSRFTLIAATTRVGLLTNPLQDR 173
            +    +  A + + +D +      A     ++++   S    +  TT    +   +  R
Sbjct: 117 SVSFAPVRGAYKVYIIDEVHMLTTQAFNALLKTLEEPPSHVIFVLCTTDPQKILETILSR 176

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF- 232
                  +    +D+   ++   +  G A  +EA   +A  +RG  R A   L ++  F 
Sbjct: 177 CQ-RFDFHRISNDDIIGRLRYICEQEGFAFDEEALEVVARHARGGMRDALSTLEQLSVFG 235

Query: 233 --------AEVAHAKTITREIADAALLRLAIDKMGF 260
                   A     +  +  +++ A      D +G 
Sbjct: 236 DGSVRIDDARALLGEVASTVLSEFACKMAVRDTVGL 271


>gi|254428260|ref|ZP_05041967.1| DNA polymerase III, subunits gamma and tau, putative [Alcanivorax
           sp. DG881]
 gi|196194429|gb|EDX89388.1| DNA polymerase III, subunits gamma and tau, putative [Alcanivorax
           sp. DG881]
          Length = 635

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 57/291 (19%), Positives = 93/291 (31%), Gaps = 65/291 (22%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARE 77
               RPRT +E  GQ      L   ++      + L H  LF G  G+GKTT+A++++R 
Sbjct: 7   ARKYRPRTFDELVGQEHVSRALMHALD-----QDRLHHAYLFTGTRGVGKTTIARILSRC 61

Query: 78  LGVN------------------------FRSTSGPVIAKAGDLAALLTNLE------DRD 107
           L                                     K  D   LL N++         
Sbjct: 62  LNCEQGVSARPCGVCPTCQEITDGRFVDLIEVDAASRTKVEDTRELLDNVQYAPTRGRYK 121

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           V  IDE+H LS      L   +E+                         + ATT    L 
Sbjct: 122 VYLIDEVHMLSAHSFNALLKTLEE------------------PPPHVKFLLATTDPQKLP 163

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             +  R  +   L     E +   ++       +   + A   +   ++G+ R A  L  
Sbjct: 164 VTVLSRC-LQFSLKALPAEQIAGHLKTLLDKEMIRYEEPALLSLGKAAQGSMRDALSL-- 220

Query: 228 RVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
              D A    ++ ++ E  +A L  +  + +      L  L  +A    GG
Sbjct: 221 --TDQAIAFGSEQLSSEAVNAMLGTVDRNHV------LTLLVALAEQEPGG 263


>gi|167949912|ref|ZP_02536986.1| recombination factor protein RarA [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 203

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 51/152 (33%), Gaps = 23/152 (15%)

Query: 87  GPVIAKAGDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM-- 137
             V++   ++ A +              +LFIDE+HR +   ++   P +ED  L  +  
Sbjct: 7   SAVLSGVKEIRAAVEQARLARQQESRPTLLFIDEVHRFNKSQQDAFLPHVEDGTLVFIGA 66

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
             E PS       LSR          G     +              IE      +RG  
Sbjct: 67  TTENPSFELNNALLSRARTYVLRALAGEELEQI--------------IEQALQDSERGLG 112

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
            +GL +T EA   +A  + G          R+
Sbjct: 113 GSGLGITPEARRLLAEAADGDAAACLSTCWRL 144


>gi|332375729|gb|AEE63005.1| unknown [Dendroctonus ponderosae]
          Length = 721

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 58/249 (23%), Positives = 89/249 (35%), Gaps = 27/249 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  EA   LK  +E  +          +    VL VGPPG GKT LA+ VA E 
Sbjct: 284 TFDDVKGVDEAKQELKDVVEFLRNPDKFSNLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 343

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F   +GP          A  +  L    ++R   V+FIDEI  +       +     
Sbjct: 344 GVPFFHAAGPEFDEVLVGQGARRVRDLFKAAKERAPCVVFIDEIDSIGSKRTNSVLHPYA 403

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
           +  ++ ++ E       +       ++ AT R   L   L    RF + + +   +    
Sbjct: 404 NQTINQLLTEMDGFHQNEG----VIVLGATNRKEDLDQALLRPGRFDVEVTVPRPDYTGR 459

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           K I+            D         +RGT    G  L  + + A +  A     +    
Sbjct: 460 KEILGLYLGKVLAKEVDLELL-----ARGTTGFTGADLESMVNQAALRAA-IDEADCVSM 513

Query: 249 ALLRLAIDK 257
             L  A DK
Sbjct: 514 KYLESARDK 522


>gi|126442209|ref|YP_001059241.1| DNA polymerase III subunits gamma and tau [Burkholderia
           pseudomallei 668]
 gi|126221702|gb|ABN85208.1| DNA polymerase III, subunits gamma and tau [Burkholderia
           pseudomallei 668]
          Length = 826

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 85/229 (37%), Gaps = 27/229 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+      GQ      L   ++  +     L H  LF G  G+GKTTL+++ A+ L   
Sbjct: 11  RPKDFASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAMEDFQL 134
              TS P     G   A     E R V +++        +  ++ ++E  +Y  ++    
Sbjct: 66  TGVTSQP----CGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             M+ E             ++++        I ATT    +   +  R  +   L     
Sbjct: 122 VYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPA 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
             + + ++R      +A   +A   +A  ++G+ R A  L  +   ++ 
Sbjct: 181 GHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSA 229


>gi|328776099|ref|XP_393770.4| PREDICTED: paraplegin-like [Apis mellifera]
          Length = 725

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 85/222 (38%), Gaps = 13/222 (5%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA------KAGDLAALLT 101
           K  A+     L +GPPG GKT LA+ VA E  V F S +G           A  +  L T
Sbjct: 319 KLGAKVPKGALLLGPPGCGKTLLAKAVATESNVPFLSMNGSEFTELIGGLGAARVRDLFT 378

Query: 102 NLEDR--DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA 159
             + R   +++IDEI  +     +         + +  + +        I +    ++A+
Sbjct: 379 EAKKRAPSIIYIDEIDAIGKKRSDSFTEFTNS-ESERTLNQLLVEMDGMIAVKDIIILAS 437

Query: 160 TTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRG 217
           T R  +L   L    RF   I ++   +E+   I +   +   L   D+        +  
Sbjct: 438 TNRAEVLDKALLRCGRFDRHILIDLPTLEERGQIFEYHLQSLLL--KDKPIKYSKYLAHL 495

Query: 218 TPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259
           TP  +G  +  V + A +  A     ++ D  L+      +G
Sbjct: 496 TPGFSGAEIANVCNEAALHAASEKKIKVDDNDLMYAVDKILG 537


>gi|302762260|ref|XP_002964552.1| hypothetical protein SELMODRAFT_2945 [Selaginella moellendorffii]
 gi|300168281|gb|EFJ34885.1| hypothetical protein SELMODRAFT_2945 [Selaginella moellendorffii]
          Length = 220

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 76/226 (33%), Gaps = 31/226 (13%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ      L      A  R       LF GP G GKT+ A+++A  L    
Sbjct: 7   RPKTFRDIVGQNMLVQALG----NAVTRGRIAPVYLFHGPRGTGKTSAAKILAAALNCVS 62

Query: 83  RSTSGP----------VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
              + P           + K+GD+  +       DV   D    +  ++ + +       
Sbjct: 63  VEDTRPCGVCRECLLLCLGKSGDVKEV-------DVASHDSTSLMKKLLMDAVVGPSSGR 115

Query: 133 QLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
               ++ E             + ++        I  TT    L +P   R          
Sbjct: 116 YKVFIIDECHTLTAEGWNVFLKCLEEPPEHAVFILTTTDTEQLPHPASTRCQKFHFPKIK 175

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           + + +   +Q  A    L V  +A   IA RS G+ R A   L ++
Sbjct: 176 DSDVVSR-LQALAAKENLEVEKDALDLIAARSGGSLRDAETTLDQL 220


>gi|293550625|ref|ZP_06673293.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium E1039]
 gi|291603246|gb|EFF33430.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium E1039]
          Length = 581

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 52/294 (17%), Positives = 99/294 (33%), Gaps = 30/294 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           R +  E+  GQ      LK  I + K         LF GP G GKT+ A++ A+ +    
Sbjct: 11  RSQRFEDIVGQKAVTQTLKNAIVSHKTSHAY----LFTGPRGTGKTSAAKIFAKAINCPN 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP---------AMEDFQ 133
                P      ++   +T+    DV+ ID      +     +           A + + 
Sbjct: 67  SKDGEPCNEC--EMCRSITSGTQEDVIEIDAASNNGVEEIRFIRDRANYAPTKAAYKVYI 124

Query: 134 LDLMVGEGPSA-----RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +D +      A     ++++        I ATT    +   +  R            + +
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPKESVIFILATTEPHKIPATIISRTQRFDFKRINTAD-I 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              ++   K + ++    A   IA  + G  R A  +L +   F+E     TIT +    
Sbjct: 184 VEHLEFILKESTISYEPAALNVIARSAEGGMRDALSILDQAISFSE----GTITLDD--- 236

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
                    +  + +D      + +        +  I A   E R  +ED+++ 
Sbjct: 237 --AMQVTGSLTDEMMDSYLSACVKKEVPEALETLNQILAAGKESRRFLEDMLQY 288


>gi|288803735|ref|ZP_06409164.1| cell division protein FtsH [Prevotella melaninogenica D18]
 gi|288333824|gb|EFC72270.1| cell division protein FtsH [Prevotella melaninogenica D18]
          Length = 676

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 62/252 (24%), Positives = 99/252 (39%), Gaps = 34/252 (13%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ  A   ++  +E  K          +     L VGPPG GKT LA+ VA E 
Sbjct: 190 TFKDVAGQTGAKQEVQEIVEFLKNPKKYTDLGGKIPKGALLVGPPGTGKTLLAKAVAGEA 249

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM- 129
           GV F S SG       V   A  +  +    +++   ++FIDEI  +     +   PAM 
Sbjct: 250 GVPFFSMSGSDFVEMFVGVGASRVRDVFHQAKEKSPCIIFIDEIDAVGRARSKN--PAMG 307

Query: 130 ----EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183
                +  L+ ++ E     +     S   ++AAT RV +L   L    RF   I ++  
Sbjct: 308 GNDERENTLNALLTEMDGFGTN----SGVIVLAATNRVDMLDKALLRAGRFDRQIHVDLP 363

Query: 184 EIEDLKTIV---QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           ++ + K I     R  KL      D  A +    S         +       A   ++K 
Sbjct: 364 DLPERKEIFLVHMRNLKLEKNLDIDLLARQTPGFSGADI---ANVCNEAALIAARHNSKE 420

Query: 241 ITREIADAALLR 252
           +T++    A+ R
Sbjct: 421 VTKQDFLDAVDR 432


>gi|300780025|ref|ZP_07089881.1| DNA-directed DNA polymerase III gamma and tau subunits
           [Corynebacterium genitalium ATCC 33030]
 gi|300534135|gb|EFK55194.1| DNA-directed DNA polymerase III gamma and tau subunits
           [Corynebacterium genitalium ATCC 33030]
          Length = 819

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 83/235 (35%), Gaps = 27/235 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP +  E  GQ +    L   ++  +         LF GP G GKT+ A+++AR
Sbjct: 2   ALYRKYRPGSFAEMIGQDQVTRPLSTALDNGRINHAY----LFSGPRGTGKTSSARILAR 57

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR----DVLFID-----EIHRLSIIVEEILYP 127
            L        GP     G  A+ ++         DV  +D      +  +  + E  ++ 
Sbjct: 58  SLNC----VEGPTSTPCGVCASCVSLAPGGPGNLDVTELDAASHRGVEDMRALRESAMFA 113

Query: 128 AMEDFQLDLMV---------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
             E      +V         G     + V+        I ATT    +   ++ R     
Sbjct: 114 PAESRYRVFIVDEAHMITREGANALLKVVEEPPEHLVFIFATTEPENIIGTIRSR-THHY 172

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                    ++++++R     G+ V+D+    +     G+PR    +L ++   A
Sbjct: 173 PFRLLTPNAMRSLLERTVAAEGVTVSDDVYPLVIRAGGGSPRDTLSILDQLLAGA 227


>gi|225870106|ref|YP_002746053.1| DNA polymerase III subunit gamma/tau [Streptococcus equi subsp.
           equi 4047]
 gi|225699510|emb|CAW93067.1| DNA polymerase III subunit gamma/tau [Streptococcus equi subsp.
           equi 4047]
          Length = 558

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 49/250 (19%), Positives = 80/250 (32%), Gaps = 50/250 (20%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     R +T  E  GQ    + LK  +E+     E + H  LF GP G GKT+ A++ A
Sbjct: 4   ALYRKYRSQTFAEMVGQSVISTTLKQAVES-----EKISHAYLFSGPRGTGKTSAAKIFA 58

Query: 76  RELGVNFR---------------------------STSGPVIAKAGDLAALLTNLEDR-- 106
           + +    +                           + S   + +  D+    T    R  
Sbjct: 59  KAMNCPNQVKGEPCNHCDICRDITTGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSRAT 118

Query: 107 -DVLFIDEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
             V  IDE+H LS      L   +E+    +  ++      +     LSR          
Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPSDNVVFILATTELHKIPATILSRVQRFEFKAIK 178

Query: 164 GL----LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTP 219
                     + D+ GI      YEIE L  I +R            +  + A+      
Sbjct: 179 QPAICEHLAAILDKEGIA-----YEIEALHLIARRAEGGMR---DALSILDQALSLSFDN 230

Query: 220 RIAGRLLRRV 229
           R+   +   +
Sbjct: 231 RVTLAIAEEI 240


>gi|331216343|ref|XP_003320851.1| replication factor C subunit 5 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309299841|gb|EFP76432.1| replication factor C subunit 5 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 346

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 61/197 (30%), Gaps = 37/197 (18%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQV-------------EACSNLKVFIEAAKAR---AEA 53
               +    +   RP TL++                     S  +  I     +   A  
Sbjct: 40  PASKEHLPWVEKYRPSTLDDVVSHQDIIQTIFEGLTRSRVVSKFENLIRRKVQKFISANQ 99

Query: 54  LDHVLFVGPPGLGKTTLAQVVARE-------LGVNFRSTSGPVIAKAGDLAALLTNL--- 103
           L H+LF GPPG GKT+    VAR+          N    +         +   + N    
Sbjct: 100 LPHLLFYGPPGTGKTSTILAVARQLFQTPMSFKNNILELNASDDRGIDVVREQIKNFASA 159

Query: 104 -----EDRDVLFIDEIHRLSIIVEEILYPAMEDFQ--LDLMVGEGPSARSVKINLSRFTL 156
                    ++ +DE  +++   +  L   +E +   +   +      R      SR T 
Sbjct: 160 RMVFSSGFKLIILDEADQMTQAAQSALRRVIEQYTKNVRFCIICNYVNRINPAIQSRCTR 219

Query: 157 IAATTRVGLLTNPLQDR 173
                R G L +P  +R
Sbjct: 220 F----RFGPLDHPEIER 232


>gi|257885058|ref|ZP_05664711.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,501]
 gi|257820910|gb|EEV48044.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,501]
          Length = 581

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 52/298 (17%), Positives = 100/298 (33%), Gaps = 38/298 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN- 81
           R +  E+  GQ      LK  I + K         LF GP G GKT+ A++ A+ +    
Sbjct: 11  RSQRFEDIVGQKAVTQTLKNAIVSHKTSHAY----LFTGPRGTGKTSAAKIFAKAINCPN 66

Query: 82  ------------FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
                        RS +        ++ A   N  + ++ FI +    +         A 
Sbjct: 67  SKDGEPCNECEMCRSITAGTQEDVIEIDAASNNGVE-EIRFIRDRANYAPTK-----AAY 120

Query: 130 EDFQLDLMVGEGPSA-----RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           + + +D +      A     ++++        I ATT    +   +  R           
Sbjct: 121 KVYIIDEVHMLSTGAFNALLKTLEEPKESVIFILATTEPHKIPATIISRTQRFDFKRINT 180

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            + +   ++   K + ++    A   IA  + G  R A  +L +   F+E     TIT +
Sbjct: 181 AD-IVEHLEFILKESTISYEPAALNVIARSAEGGMRDALSILDQAISFSE----GTITLD 235

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
                        +  + +D      + +        +  I A   E R  +ED+++ 
Sbjct: 236 D-----AMQVTGSLTDEMMDSYLSACVKKEVPEALETLNQILAAGKESRRFLEDMLQY 288


>gi|239622697|ref|ZP_04665728.1| predicted protein [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|239514694|gb|EEQ54561.1| predicted protein [Bifidobacterium longum subsp. infantis CCUG
           52486]
          Length = 1008

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 59/282 (20%), Positives = 93/282 (32%), Gaps = 28/282 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     RP T E   GQ +    L   ++  K     L H  LF GP G GKT+ A+++A
Sbjct: 42  ALYRRYRPDTFEGVIGQDQVTVPLMRALDEGK-----LTHAYLFSGPRGCGKTSSARILA 96

Query: 76  RELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------P 127
           R +      TS P        DLA         DV+ ID      +     L       P
Sbjct: 97  RCVNCAKGPTSHPCGECESCKDLA--TGGPGSIDVVEIDAASHNGVDDARELRERAGFAP 154

Query: 128 AMEDFQLDLMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR---FGI 176
           A + +++ ++         G     + V+        I ATT    +   ++ R   +  
Sbjct: 155 ARDRYKIFILDEAHMVTQQGFNALLKIVEEPPEHVMFIFATTEPDKVIGTIRSRTHHYPF 214

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
            +         L+TI  +        V   A        R T  +  +L+    +     
Sbjct: 215 RLVPQEVMGPYLETICDKEGIKPEPGVLKLAMRAGGGSMRDTLSVLDQLMVGSVEGVITH 274

Query: 237 HAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
            A          AL+  A+D +  D        +I +   GG
Sbjct: 275 DAAVALLGFTPEALIGEAVDAV-IDHNGEALYGVIQKVVVGG 315


>gi|195977810|ref|YP_002123054.1| DNA polymerase III subunits gamma and tau [Streptococcus equi
           subsp. zooepidemicus MGCS10565]
 gi|195974515|gb|ACG62041.1| DNA polymerase III gamma/tau subunit DnaX [Streptococcus equi
           subsp. zooepidemicus MGCS10565]
          Length = 558

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 77/249 (30%), Gaps = 48/249 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     R +T  E  GQ    + LK  +E+ K         LF GP G GKT+ A++ A+
Sbjct: 4   ALYRKYRSQTFAEMVGQSVISTTLKQAVESGKISHAY----LFSGPRGTGKTSAAKIFAK 59

Query: 77  ELGVNFR---------------------------STSGPVIAKAGDLAALLTNLEDR--- 106
            +    +                           + S   + +  D+    T    R   
Sbjct: 60  AMNCPNQVKGEPCNHCDICRDITTGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSRATY 119

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164
            V  IDE+H LS      L   +E+    +  ++      +     LSR           
Sbjct: 120 KVYIIDEVHMLSTGAFNALLKTLEEPSDNVVFILATTELHKIPATILSRVQRFEFKAIKQ 179

Query: 165 ----LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPR 220
                    + D+ GI      YE E L  I +R            +  + A+      R
Sbjct: 180 AAICEHLAAILDKEGIA-----YETEALHLIARRAEGGMR---DALSILDQALSLSFDNR 231

Query: 221 IAGRLLRRV 229
           +   +   +
Sbjct: 232 VTLAIAEEI 240


>gi|116205575|ref|XP_001228598.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
 gi|88176799|gb|EAQ84267.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
          Length = 389

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 81/233 (34%), Gaps = 39/233 (16%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
                   +   RP +L + +G  +  + +  F+++ +     L H+L  GPPG GKT+ 
Sbjct: 38  EAEDSLPWVEKYRPVSLADVSGHQDILATINKFVDSNR-----LPHLLLYGPPGTGKTST 92

Query: 71  AQVVAR-------------------ELGVNFRSTSGPVIAKAGDL-----AALLTNLEDR 106
              +AR                   + G++         A    +     +A  T +   
Sbjct: 93  ILALARRIYGSENMRQMVLELNASDDRGIDVVREQIKTFASTKQIFTMGASASRTGIAGF 152

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDFQLD--LMVGEGPSARSVKINLSRFTLIAATTRVG 164
            ++ +DE   ++   +  L   ME +  +    +    S +     LSR T         
Sbjct: 153 KLIILDEADAMTNTAQMALRRIMEKYTANTRFCIIANYSHKLSPALLSRCTRFRF----- 207

Query: 165 LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRG 217
              +PL+++    +     E E +K I +    L  L+  D       +++  
Sbjct: 208 ---SPLKEQDIRVLVDKVIEEETVKIIPEATEALVRLSKGDMRRALNVLQACH 257


>gi|83720172|ref|YP_442740.1| DNA polymerase III subunits gamma and tau [Burkholderia
           thailandensis E264]
 gi|83653997|gb|ABC38060.1| DNA polymerase III, subunits gamma and tau, programmed
           [Burkholderia thailandensis E264]
          Length = 812

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 85/229 (37%), Gaps = 27/229 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+      GQ      L   ++  +     L H  LF G  G+GKTTL+++ A+ L   
Sbjct: 11  RPKDFASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAMEDFQL 134
              TS P     G   A     E R V +++        +  ++ ++E  +Y  ++    
Sbjct: 66  TGVTSQP----CGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             M+ E             ++++        I ATT    +   +  R  +   L     
Sbjct: 122 VYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPA 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
             + + ++R      +A   +A   +A  ++G+ R A  L  +   ++ 
Sbjct: 181 GHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSA 229


>gi|119953564|ref|YP_945774.1| cell division protein FtsH [Borrelia turicatae 91E135]
 gi|119862335|gb|AAX18103.1| cell division protein FtsH [Borrelia turicatae 91E135]
          Length = 635

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 64/253 (25%), Positives = 101/253 (39%), Gaps = 35/253 (13%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ EA   L+  +E  K         A     VL VG PG GKT LA+ VA E 
Sbjct: 171 TFKDVAGQEEAKQELREVVEFLKNPKKFEKIGARIPKGVLLVGSPGTGKTLLAKAVAGEA 230

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GVNF   SG       V   A  +  L  N       ++FIDE+  +       L    +
Sbjct: 231 GVNFFHMSGSDFVEMFVGVGASRVRDLFDNARKNAPCIIFIDELDAVGRSRGAGLGGGHD 290

Query: 131 DFQLDL------MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNF 182
           + +  L      M G G     +        ++AAT R  +L + L    RF   + +  
Sbjct: 291 EREQTLNQLLVEMDGFGTYTNVI--------VMAATNRPDVLDSALLRPGRFDRQVTVTL 342

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            +I++ + I+   A+ T L+       ++ + +R TP ++G  L  + +   +  A+   
Sbjct: 343 PDIKEREAILNIHAQKTKLSKE----IDLHVIARATPGVSGADLANLINEGALIAARNDQ 398

Query: 243 REIADAALLRLAI 255
            EI    L     
Sbjct: 399 SEILMHDLEEARD 411


>gi|145494450|ref|XP_001433219.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124400336|emb|CAK65822.1| unnamed protein product [Paramecium tetraurelia]
          Length = 465

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 61/279 (21%), Positives = 100/279 (35%), Gaps = 28/279 (10%)

Query: 26  TLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           + ++  G  +A  +LK  I       E  +   +    +L  GPPG GKT LA+  A E 
Sbjct: 161 SWDDVAGLEKAKDSLKEAIITPMRFPELFQGARKPWMGILLYGPPGTGKTFLAKACATEC 220

Query: 79  -GVNFRSTSGPVIAK-AGDLAALLTNL------EDRDVLFIDEIHRLSIIVE----EILY 126
            G  F  +S  +I+K  G+   L+  L          ++FIDE+  ++   E        
Sbjct: 221 EGTFFSVSSADLISKFVGESERLIKELFNMARESKPTIIFIDEVDSMTGNRESGGGNEAS 280

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
             ++   L  M G G +  SV        ++ AT     L   ++ RF   I +   +++
Sbjct: 281 SRVKTQFLVEMQGVGNNNESV-------LVLGATNLPWSLDPAIRRRFEKRIYIPLPDVQ 333

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
               +++   K T   +T     +IA    G        L  VRD       KT      
Sbjct: 334 GRLQLLKNKMKSTPNNLTPAEFEDIAKMLEGYSGSDMNTL--VRDACFEPLRKTERATHF 391

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETI 285
                   +  M     D     M   +  GG + +  I
Sbjct: 392 KQTQTPQGMKYMACSPSDPEGQQMRMYDIKGGQLYLPHI 430


>gi|254585551|ref|XP_002498343.1| ZYRO0G08008p [Zygosaccharomyces rouxii]
 gi|238941237|emb|CAR29410.1| ZYRO0G08008p [Zygosaccharomyces rouxii]
          Length = 826

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 61/259 (23%), Positives = 94/259 (36%), Gaps = 27/259 (10%)

Query: 24  PRT-LEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVV 74
           P++ LE   G  +  + L   I       E            VL  GPPG GKT++A  +
Sbjct: 187 PQSRLESIGGMEDVVAQLMELIGLPILHPEIYISTGVEPPRGVLLHGPPGCGKTSIANAL 246

Query: 75  ARELGVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           A EL V F S S P +          K  DL     +L    ++F DEI  ++   +   
Sbjct: 247 AGELQVPFLSISAPSVVSGMSGESEKKIRDLFDEARSLAP-CLMFFDEIDAITPKRDGGA 305

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183
              ME   +  ++         K       +I AT R   L   L+   RF   I LN  
Sbjct: 306 QREMERRIVAQLLTSMDELNMEKTGGKPVIVIGATNRPDSLDAALRRAGRFDREICLNVP 365

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
                  I+++ A+   +        +    ++ TP   G  L+ +   A     K I  
Sbjct: 366 NELSRVHILKKLAQNLKID----GEIDFIKLAKLTPGFVGADLKALITAAGTCAIKRIFH 421

Query: 244 EIADAALLRLAIDKMGFDQ 262
             A +++     +KM  DQ
Sbjct: 422 AYAYSSIA--TDNKMDIDQ 438



 Score = 46.2 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 46/242 (19%), Positives = 82/242 (33%), Gaps = 20/242 (8%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLT 101
           K    A   VL  GPPG GKT LA+ VA E   NF S  GP +           +  + T
Sbjct: 544 KVGISAPAGVLLWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESERAIRQVFT 603

Query: 102 NLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA 159
                   V+F DE+  L    +  L  +       L+           I      ++ A
Sbjct: 604 RARASVPCVIFFDELDALVPRRDSTLSESSSRVVNTLLTELDGLNDRRGI-----FVVGA 658

Query: 160 TTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAV-TDEAACEIAMRSR 216
           T R  ++   +    R    + +     E+   I++   +  G  + +D     +    R
Sbjct: 659 TNRPDMIDPAMLRPGRLDKTLFIELPNAEEKLDILKTLVRTNGTPMSSDVDLETVIADDR 718

Query: 217 GTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD----QLDLRYLTMIA 272
                   +   VR+ + +A  ++  +     +++   +DK   D          L  ++
Sbjct: 719 CKNFSGADIASLVRESSVLALKRSFFKNDQVQSVVENNLDKEFEDLSVAYPSEEILVTMS 778

Query: 273 RN 274
             
Sbjct: 779 DF 780


>gi|134277465|ref|ZP_01764180.1| DNA polymerase III, subunits gamma and tau [Burkholderia
           pseudomallei 305]
 gi|134251115|gb|EBA51194.1| DNA polymerase III, subunits gamma and tau [Burkholderia
           pseudomallei 305]
          Length = 837

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 85/229 (37%), Gaps = 27/229 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+      GQ      L   ++  +     L H  LF G  G+GKTTL+++ A+ L   
Sbjct: 11  RPKDFASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAMEDFQL 134
              TS P     G   A     E R V +++        +  ++ ++E  +Y  ++    
Sbjct: 66  TGVTSQP----CGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             M+ E             ++++        I ATT    +   +  R  +   L     
Sbjct: 122 VYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPA 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
             + + ++R      +A   +A   +A  ++G+ R A  L  +   ++ 
Sbjct: 181 GHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSA 229


>gi|314948526|ref|ZP_07851906.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
           TX0082]
 gi|313645023|gb|EFS09603.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
           TX0082]
          Length = 581

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 52/298 (17%), Positives = 100/298 (33%), Gaps = 38/298 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN- 81
           R +  E+  GQ      LK  I + K         LF GP G GKT+ A++ A+ +    
Sbjct: 11  RSQRFEDIVGQKAVTQTLKNAIVSHKTSHAY----LFTGPRGTGKTSAAKIFAKAINCPN 66

Query: 82  ------------FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
                        RS +        ++ A   N  + ++ FI +    +         A 
Sbjct: 67  SKDGEPCNECEMCRSITAGTQEDVIEIDAASNNGVE-EIRFIRDRANYAPTK-----AAY 120

Query: 130 EDFQLDLMVGEGPSA-----RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           + + +D +      A     ++++        I ATT    +   +  R           
Sbjct: 121 KVYIIDEVHMLSTGAFNALLKTLEEPKESVIFILATTEPHKIPATIISRTQRFDFKRINT 180

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            + +   ++   K + ++    A   IA  + G  R A  +L +   F+E     TIT +
Sbjct: 181 AD-IVEHLEFILKESTISYEPAALNVIARSAEGGMRDALSILDQAISFSE----GTITLD 235

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
                        +  + +D      + +        +  I A   E R  +ED+++ 
Sbjct: 236 D-----AMQVTGSLTDEMMDSYLSACVKKEVPEALETLNQILAAGKESRRFLEDMLQY 288


>gi|229819047|ref|YP_002880573.1| DNA polymerase III, subunits gamma and tau [Beutenbergia cavernae
           DSM 12333]
 gi|229564960|gb|ACQ78811.1| DNA polymerase III, subunits gamma and tau [Beutenbergia cavernae
           DSM 12333]
          Length = 841

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 60/175 (34%), Gaps = 26/175 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T  +  GQ      L   + + +A        LF GP G GKTT A+++AR
Sbjct: 4   ALYRRYRPDTFADVIGQEHVTGPLMAALRSDRATHAY----LFSGPRGCGKTTSARILAR 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR----DVLFIDEIHRLSIIVEEILY------ 126
            L        GP     G   + +          DV+ ID      +     L       
Sbjct: 60  CLNC----AQGPTDTPCGTCDSCVELARGGPGSLDVVEIDAASHNGVDDARDLRERAVFA 115

Query: 127 PAMEDFQLDLMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           PA + +++ ++         G     + V+        + ATT    +   ++ R
Sbjct: 116 PARDRYKIFILDEAHMVTAQGFNALLKLVEEPPPHVKFVFATTEPDRVIGTIRSR 170


>gi|145250105|ref|XP_001396566.1| replication factor C subunit 4 [Aspergillus niger CBS 513.88]
 gi|134082079|emb|CAK42196.1| unnamed protein product [Aspergillus niger]
          Length = 352

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 72/227 (31%), Gaps = 38/227 (16%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   +   RP  L++  G  E    LK+      A+   + HV+  G PG+GKTT    +
Sbjct: 27  ELPWVEKYRPVYLDDIVGNTETVERLKII-----AKDGNMPHVIISGMPGIGKTTSILCL 81

Query: 75  AR-----ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDV---------LFIDEIHRLSII 120
           AR              +         +   +     + V         + +DE   ++  
Sbjct: 82  ARQLLGDAYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRHKLVILDEADSMTSG 141

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            ++ L   ME +                   S      A  +   +  P+Q R  I    
Sbjct: 142 AQQALRRTMEIYS------------------STTRFAFACNQSNKIIEPIQSRCAILRYA 183

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
              + + +K  +++      +   +E    +   + G  R A   L+
Sbjct: 184 RLTDAQIVKR-LKQVCDAEKVEHNEEGIAALVFSAEGDMRQAINNLQ 229


>gi|319947251|ref|ZP_08021484.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus australis
           ATCC 700641]
 gi|319746493|gb|EFV98753.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus australis
           ATCC 700641]
          Length = 558

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 49/270 (18%), Positives = 84/270 (31%), Gaps = 53/270 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     R +T  +  GQ    + L+  +E  K         LF GP G GKT++A++ A+
Sbjct: 4   ALYRKYRSQTFGQLVGQEVIATTLRQAVEQGKISHAY----LFSGPRGTGKTSVAKIFAK 59

Query: 77  ELGVNFR------------------------STSGPVIAKAGDLAALLTN------LEDR 106
            +    +                                   ++  +         L   
Sbjct: 60  AMNCPNQKGGEPCNDCYICEAITNGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLAPH 119

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
            V  IDE+H LS      L   +E+                         I ATT +  +
Sbjct: 120 KVYIIDEVHMLSTGAFNALLKTLEEPT------------------ENVVFILATTELHKI 161

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
              +  R       +      ++  ++      G+   +EA   IA R+ G  R A  +L
Sbjct: 162 PATILSRVQRFEFKSIKTP-AIQDHLKAVLDKEGIDYEEEAVAIIARRAEGGMRDALSIL 220

Query: 227 RRVRDFAEVAHAKTITREIADAALLRLAID 256
            +       A   T T E    ++ + A+D
Sbjct: 221 DQALSLTAGAQLTTATAEEITGSISQEALD 250


>gi|291517614|emb|CBK71230.1| DNA polymerase III, subunits gamma and tau [Bifidobacterium longum
           subsp. longum F8]
          Length = 970

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 59/282 (20%), Positives = 93/282 (32%), Gaps = 28/282 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     RP T E   GQ +    L   ++  K     L H  LF GP G GKT+ A+++A
Sbjct: 4   ALYRRYRPDTFEGVIGQDQVTVPLMRALDEGK-----LTHAYLFSGPRGCGKTSSARILA 58

Query: 76  RELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------P 127
           R +      TS P        DLA         DV+ ID      +     L       P
Sbjct: 59  RCVNCAKGPTSHPCGECESCKDLA--TGGPGSIDVVEIDAASHNGVDDARELRERAGFAP 116

Query: 128 AMEDFQLDLMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR---FGI 176
           A + +++ ++         G     + V+        I ATT    +   ++ R   +  
Sbjct: 117 ARDRYKIFILDEAHMVTQQGFNALLKIVEEPPEHVMFIFATTEPDKVIGTIRSRTHHYPF 176

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
            +         L+TI  +        V   A        R T  +  +L+    +     
Sbjct: 177 RLVPQEVMGPYLETICDKEGIKPEPGVLKLAMRAGGGSMRDTLSVLDQLMVGSVEGVITH 236

Query: 237 HAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
            A          AL+  A+D +  D        +I +   GG
Sbjct: 237 DAAVALLGFTPEALIGEAVDAV-IDHNGEALYGVIQKVVVGG 277


>gi|261252406|ref|ZP_05944979.1| DNA polymerase III subunits gamma and tau [Vibrio orientalis CIP
           102891]
 gi|260935797|gb|EEX91786.1| DNA polymerase III subunits gamma and tau [Vibrio orientalis CIP
           102891]
          Length = 706

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 52/265 (19%), Positives = 82/265 (30%), Gaps = 57/265 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP    E  GQ    + L    E A A+       LF G  G+GKT++ ++ A+ L    
Sbjct: 11  RPTKFNEVVGQAHVLTAL----ENALAQNRLHHAYLFSGTRGVGKTSIGRLFAKGLNCET 66

Query: 83  RSTSGP------------------------VIAKAGDLAALLTNLEDRD------VLFID 112
             T+ P                           K  D   LL N++ +       V  ID
Sbjct: 67  GITANPCGTCDTCKEIDEGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRFKVYLID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS      L   +E+                         + ATT    L   +  
Sbjct: 127 EVHMLSRHSFNALLKTLEE------------------PPEYVKFLLATTDPQKLPVTILS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R  +   L    ++ +   +    K   ++    A   I+  + G+ R A  L     D 
Sbjct: 169 RC-LQFHLKPISVDTIHEQLDHILKEEQVSAEARALGMISHAADGSMRDALSL----TDQ 223

Query: 233 AEVAHAKTITREIADAALLRLAIDK 257
           A       +  +     L  L  D+
Sbjct: 224 AIALGNGQVITDSVAHMLGTLDTDQ 248


>gi|223889283|ref|ZP_03623870.1| cell division protein FtsH [Borrelia burgdorferi 64b]
 gi|223885204|gb|EEF56307.1| cell division protein FtsH [Borrelia burgdorferi 64b]
          Length = 639

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 59/270 (21%), Positives = 98/270 (36%), Gaps = 33/270 (12%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ E    L+  +E  K         A+    VL VG PG GKT LA+ VA E 
Sbjct: 170 TFKDVAGQEEVKQELREVVEFLKNPKKFEKIGAKIPKGVLLVGSPGTGKTLLAKAVAGEA 229

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV+F   SG       V   A  +  L  N       ++FIDE+  +       L    +
Sbjct: 230 GVSFFHMSGSDFVEMFVGVGASRVRDLFDNARKNSPCIIFIDELDAVGRSRGAGLGGGHD 289

Query: 131 DFQLDL------MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNF 182
           + +  L      M G G     +        ++AAT R  +L + L    RF   + ++ 
Sbjct: 290 EREQTLNQLLVEMDGFGTHTNVI--------VMAATNRPDVLDSALLRPGRFDRQVTVSL 341

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            +I++ + I+   +  T L+               +      L+      A   +   I 
Sbjct: 342 PDIKEREAILNIHSLKTKLSKDINLQVIARATPGASGADLANLINEGALIAARNNQDEIL 401

Query: 243 REIADAALLR--LAIDKMGFDQLDLRYLTM 270
            +  + A  +  + + K      D + L  
Sbjct: 402 MKDMEEARDKILMGVAKKSMTITDRQKLET 431


>gi|226321254|ref|ZP_03796782.1| cell division protein FtsH [Borrelia burgdorferi Bol26]
 gi|226233286|gb|EEH32037.1| cell division protein FtsH [Borrelia burgdorferi Bol26]
          Length = 639

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 59/270 (21%), Positives = 98/270 (36%), Gaps = 33/270 (12%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ E    L+  +E  K         A+    VL VG PG GKT LA+ VA E 
Sbjct: 170 TFKDVAGQEEVKQELREVVEFLKNPKKFEKIGAKIPKGVLLVGSPGTGKTLLAKAVAGEA 229

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV+F   SG       V   A  +  L  N       ++FIDE+  +       L    +
Sbjct: 230 GVSFFHMSGSDFVEMFVGVGASRVRDLFDNARKNSPCIIFIDELDAVGRSRGAGLGGGHD 289

Query: 131 DFQLDL------MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNF 182
           + +  L      M G G     +        ++AAT R  +L + L    RF   + ++ 
Sbjct: 290 EREQTLNQLLVEMDGFGTHTNVI--------VMAATNRPDVLDSALLRPGRFDRQVTVSL 341

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            +I++ + I+   +  T L+               +      L+      A   +   I 
Sbjct: 342 PDIKEREAILNIHSLKTKLSKDINLQVIARATPGASGADLANLINEGALIAARNNQDEIL 401

Query: 243 REIADAALLR--LAIDKMGFDQLDLRYLTM 270
            +  + A  +  + + K      D + L  
Sbjct: 402 MKDMEEARDKILMGVAKKSMTITDRQKLET 431


>gi|161524619|ref|YP_001579631.1| DNA polymerase III subunits gamma and tau [Burkholderia multivorans
           ATCC 17616]
 gi|189350625|ref|YP_001946253.1| DNA polymerase III subunits gamma and tau [Burkholderia multivorans
           ATCC 17616]
 gi|160342048|gb|ABX15134.1| DNA polymerase III, subunits gamma and tau [Burkholderia
           multivorans ATCC 17616]
 gi|189334647|dbj|BAG43717.1| DNA polymerase III gamma and tau subunit [Burkholderia multivorans
           ATCC 17616]
          Length = 821

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 85/229 (37%), Gaps = 27/229 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+      GQ      L   ++  +     L H  LF G  G+GKTTL+++ A+ L   
Sbjct: 11  RPKDFASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAMEDFQL 134
              TS P     G   A     E R V +++        +  ++ ++E  +Y  ++    
Sbjct: 66  TGVTSQP----CGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             M+ E             ++++        I ATT    +   +  R  +   L     
Sbjct: 122 VYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPA 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
             + + ++R      +A   +A   +A  ++G+ R A  L  +   ++ 
Sbjct: 181 GHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSA 229


>gi|134295858|ref|YP_001119593.1| DNA polymerase III subunits gamma and tau [Burkholderia
           vietnamiensis G4]
 gi|134139015|gb|ABO54758.1| DNA polymerase III, subunits gamma and tau [Burkholderia
           vietnamiensis G4]
          Length = 880

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 85/229 (37%), Gaps = 27/229 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+      GQ      L   ++  +     L H  LF G  G+GKTTL+++ A+ L   
Sbjct: 11  RPKDFASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAMEDFQL 134
              TS P     G   A     E R V +++        +  ++ ++E  +Y  ++    
Sbjct: 66  TGVTSQP----CGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             M+ E             ++++        I ATT    +   +  R  +   L     
Sbjct: 122 VYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPA 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
             + + ++R      ++   +A   +A  ++G+ R A  L  +   ++ 
Sbjct: 181 GHIVSHLERILGEEQISFEQQALRLLARAAQGSMRDALSLTDQAIAYSA 229


>gi|109899204|ref|YP_662459.1| DNA polymerase III, subunits gamma and tau [Pseudoalteromonas
           atlantica T6c]
 gi|109701485|gb|ABG41405.1| DNA polymerase III, tau subunit / DNA polymerase III, gamma subunit
           [Pseudoalteromonas atlantica T6c]
          Length = 914

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 53/263 (20%), Positives = 81/263 (30%), Gaps = 59/263 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP    E  GQ    + +   ++      + L H  LF G  G+GKTT+A++ ++ L   
Sbjct: 11  RPNNFSELVGQEHVVAAISNALD-----NDRLHHAYLFTGTRGVGKTTIARIFSKSLNCE 65

Query: 82  FRSTS------------------------GPVIAKAGDLAALLTNLEDRD------VLFI 111
               S                             K  D   LL N++ R       V  I
Sbjct: 66  LGMGSKPCGKCSTCVEIEQGNFVDLLEIDAASRTKVEDTRELLDNVQYRPSRGRYKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSKHSFNALLKTLEE------------------PPPHVKFLLATTDPQKLPITIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L       +   +Q       L    EA  +IA  ++G+ R A  L     D
Sbjct: 168 SRC-LQFNLKALSRAQIAQQLQHVFAQEQLQNAPEALAQIARAAQGSMRDALSL----SD 222

Query: 232 FAEVAHAKTITREIADAALLRLA 254
            A       ++  I    L  + 
Sbjct: 223 QAIAQGNGNVSLSIVTDMLGLMD 245


>gi|332969682|gb|EGK08698.1| cell division protein FtsH [Desmospora sp. 8437]
          Length = 455

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 83/249 (33%), Gaps = 38/249 (15%)

Query: 8   LSRNVSQEDADISLLRPR-TLEEFTGQVEACSNLK-----------VFIEAAKARAEALD 55
             +N   ED +    RP  T ++  G  +   N++           +F    K       
Sbjct: 162 FRKNALDEDVE----RPTLTFQDVGGLEKLKENIRMNIIYPFQNPDLFRSYGKKTGGG-- 215

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVN------FRSTSGPVIAKAGDLAALLTNLEDR--D 107
            +L  GPPG GKT +A+  A E   +       R     +     +L  L          
Sbjct: 216 -ILLYGPPGCGKTFIARATAGECNAHFISLDIHRILDMYIGQSEKNLHELFETARRHAPT 274

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           ++FIDE+  +    ++            L+          +  L    ++ AT     + 
Sbjct: 275 IIFIDELDAIGGARQQGQSAHSRALTNQLLNELDGIHSDNRDIL----VLGATNTPWFVD 330

Query: 168 NPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           + L+   RF   + +   ++E    I+    K   +   D         ++ T R +G  
Sbjct: 331 SALRRPGRFDRVLFVAPPDLEARVEILHIHLKEKPVEEID-----YVKVAKKTDRFSGAD 385

Query: 226 LRRVRDFAE 234
           LR V D A 
Sbjct: 386 LRAVVDTAA 394


>gi|223648392|gb|ACN10954.1| Lon protease homolog, mitochondrial precursor [Salmo salar]
          Length = 1014

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/246 (17%), Positives = 84/246 (34%), Gaps = 37/246 (15%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI  ++ R      +L F GPPG+GKT++A+ +AR L   +   S
Sbjct: 550 EDHYGMDDVKKRILEFIAVSQLRGSTQGKILCFYGPPGVGKTSIARSIARALNREYFRFS 609

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ ++    +        
Sbjct: 610 VGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLVLIDEVDKIGRGYQGDPSSALL 669

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD  +        V ++LS+   I        +  PL+DR  +     +
Sbjct: 670 ELLDPEQNFNFLDHYL-------DVPVDLSKVLFICTANVTDTIPEPLRDRMEMINVSGY 722

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
              E L       A+   +             +  +P     L+R+    + V + +   
Sbjct: 723 VAQEKLA-----IAEKYLVPQLRTQCGLTEDTTNISPEALNLLIRQYCRESGVRNLQKQV 777

Query: 243 REIADA 248
            ++   
Sbjct: 778 EKVFRK 783


>gi|167587030|ref|ZP_02379418.1| DNA polymerase III subunits gamma and tau [Burkholderia ubonensis
           Bu]
          Length = 371

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/250 (18%), Positives = 90/250 (36%), Gaps = 28/250 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+      GQ      L   ++  +     L H  LF G  G+GKTTL+++ A+ L   
Sbjct: 11  RPKDFASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAMEDFQL 134
              TS P     G   A     E R V +++        +  ++ ++E  +Y  ++    
Sbjct: 66  TGVTSQP----CGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             M+ E             ++++        I ATT    +   +  R  +   L     
Sbjct: 122 VYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPA 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
             + + ++R      +    +A   +A  ++G+ R A  L  +   ++     +T     
Sbjct: 181 GHIVSHLERILGEEQITFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTETAVS-G 239

Query: 246 ADAALLRLAI 255
              AL +  +
Sbjct: 240 MLGALDQTYM 249


>gi|322690330|ref|YP_004219900.1| DNA polymerase III gamma and tau subunits [Bifidobacterium longum
           subsp. longum JCM 1217]
 gi|320455186|dbj|BAJ65808.1| DNA polymerase III gamma and tau subunits [Bifidobacterium longum
           subsp. longum JCM 1217]
          Length = 970

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 59/282 (20%), Positives = 93/282 (32%), Gaps = 28/282 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     RP T E   GQ +    L   ++  K     L H  LF GP G GKT+ A+++A
Sbjct: 4   ALYRRYRPDTFEGVIGQDQVTVPLMRALDEGK-----LTHAYLFSGPRGCGKTSSARILA 58

Query: 76  RELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------P 127
           R +      TS P        DLA         DV+ ID      +     L       P
Sbjct: 59  RCVNCAKGPTSHPCGECESCKDLA--TGGPGSIDVVEIDAASHNGVDDARELRERAGFAP 116

Query: 128 AMEDFQLDLMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR---FGI 176
           A + +++ ++         G     + V+        I ATT    +   ++ R   +  
Sbjct: 117 ARDRYKIFILDEAHMVTQQGFNALLKIVEEPPEHVMFIFATTEPDKVIGTIRSRTHHYPF 176

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
            +         L+TI  +        V   A        R T  +  +L+    +     
Sbjct: 177 RLVPQEVMGPYLETICDKEGIKPEPGVLKLAMRAGGGSMRDTLSVLDQLMVGSVEGVITH 236

Query: 237 HAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
            A          AL+  A+D +  D        +I +   GG
Sbjct: 237 DAAVALLGFTPEALIGEAVDAV-IDHNGEALYGVIQKVVVGG 277


>gi|116333249|ref|YP_794776.1| DNA polymerase III, gamma/tau subunit [Lactobacillus brevis ATCC
           367]
 gi|116098596|gb|ABJ63745.1| DNA polymerase III, gamma/tau subunit [Lactobacillus brevis ATCC
           367]
          Length = 576

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 81/227 (35%), Gaps = 23/227 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+  ++  GQ      LK  I       + + H  LF GP G GKT+ A++ A+ +  +
Sbjct: 11  RPQQFKDMIGQEVVTRTLKNAIT-----TKQISHAYLFAGPRGTGKTSAAKIFAKAINCH 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDL 136
            ++   P      D    +TN    DV+ ID      +  +  I +++ Y          
Sbjct: 66  HQTDGEPCNEC--DTCQAITNGTLNDVIEIDAASNNGVEEIRDIRDKVKYAPTVADYKVY 123

Query: 137 MVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ++ E             ++++   +    I ATT    +   +  R            + 
Sbjct: 124 IIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPATIISRTQRFDFKRIAASDS 183

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
               +       G+   ++A   IA  + G  R A  +L +   F +
Sbjct: 184 YSR-MTYILDQKGVTYDEQALKVIAKAAEGGMRDALSILDQALSFGD 229


>gi|315453093|ref|YP_004073363.1| DNA polymerase III subunit gamma [Helicobacter felis ATCC 49179]
 gi|315132145|emb|CBY82773.1| DNA polymerase III subunit gamma [Helicobacter felis ATCC 49179]
          Length = 489

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/242 (17%), Positives = 73/242 (30%), Gaps = 53/242 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  ++  GQ      L + +E  +         LF G  G GKT+ A++ AR L    
Sbjct: 8   RPKHFQDLVGQESVSKTLSLALEQGRLAHAY----LFSGLRGSGKTSSARIFARALQCEK 63

Query: 83  RSTS------------------------GPVIAKAGDLAALLTN------LEDRDVLFID 112
             TS                        G    +  D+  ++        +    +  ID
Sbjct: 64  APTSTPCDVCANCVDALQNKHVDIIEMDGASNRRIEDIREVIEQTKYQPSMGAFKIFIID 123

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H L+      L   +E+                     R   I ATT    L   +  
Sbjct: 124 EVHMLTKEAFNALLKTLEE------------------PPPRVKFILATTDPLKLPATILS 165

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R            + +   +Q    L G+   +     +A    G+ R    L  +  ++
Sbjct: 166 RTQ-HFHFKKIPPKAIVAHLQHILSLEGVQYQEGVLEILARSGGGSLRDTLTLTEQAINY 224

Query: 233 AE 234
           + 
Sbjct: 225 SA 226


>gi|292493699|ref|YP_003529138.1| DNA polymerase III subunits gamma and tau [Nitrosococcus halophilus
           Nc4]
 gi|291582294|gb|ADE16751.1| DNA polymerase III, subunits gamma and tau [Nitrosococcus
           halophilus Nc4]
          Length = 531

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 47/241 (19%), Positives = 73/241 (30%), Gaps = 55/241 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH-VLFVGPPGLGKTTLAQVVARELGVN 81
           RPR   +  GQ       +  I       + L H  LF G  G+GKTTLA+++A+ L   
Sbjct: 11  RPRNFTQLVGQEHVV---RALING--LDNDRLHHAFLFTGTRGVGKTTLARILAKSLNCE 65

Query: 82  FRSTS------------------------GPVIAKAGDLAALLTNL------EDRDVLFI 111
               S                                D   LL N+          V  I
Sbjct: 66  EGVGSTPCGNCQNCQAIDAGSFVDLIEVDAASRTGVDDTRELLENVHYAPSRGRYKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H  S      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMFSTSSFNALLKTLEE------------------PPPHIKFLLATTDPKKLPVTVL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L     + + + + +      +    +A   IA  + G+ R A  LL +   
Sbjct: 168 SRC-LQFNLRRITPQVIASHLDKILSEEQIPSEFQALTLIARTAEGSMRDALSLLDQAIS 226

Query: 232 F 232
           +
Sbjct: 227 Y 227


>gi|302381707|ref|YP_003817530.1| DNA polymerase III subunits gamma/tau [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302192335|gb|ADK99906.1| DNA polymerase III, subunits gamma and tau [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 612

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 83/227 (36%), Gaps = 21/227 (9%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RPRT E+  GQ      L      A A        +  G  G+GKTT A+++AR L
Sbjct: 66  ARKYRPRTFEDLIGQEAMVRTL----TNAFATGRIAHAFMLTGVRGVGKTTTARLLARAL 121

Query: 79  GVNFRSTSGPVIAKAGDLA--ALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
                    P +         A +   +  DV+ +D      ++ +  I+E + Y  +E 
Sbjct: 122 NNETDVIDRPSLELTAHGRHDAAIMAGQHMDVMELDAASHTGVNDIRDILESVRYAPVEA 181

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT +  +   +  R      L  
Sbjct: 182 RYKVYVLDEVHMLSNQAFNALLKTLEEPPPHAKFIFATTEIRKVPVTILSRCQ-RFDLRR 240

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
            E E L   + R A   G+ V D+A   IA  + G+ R    LL + 
Sbjct: 241 VEPEILVEHLGRIATKEGMKVEDDALALIARAAEGSVRDGLSLLDQA 287


>gi|221198096|ref|ZP_03571142.1| DNA polymerase III subunit tau [Burkholderia multivorans CGD2M]
 gi|221182028|gb|EEE14429.1| DNA polymerase III subunit tau [Burkholderia multivorans CGD2M]
          Length = 818

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 85/229 (37%), Gaps = 27/229 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+      GQ      L   ++  +     L H  LF G  G+GKTTL+++ A+ L   
Sbjct: 11  RPKDFASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAMEDFQL 134
              TS P     G   A     E R V +++        +  ++ ++E  +Y  ++    
Sbjct: 66  TGVTSQP----CGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             M+ E             ++++        I ATT    +   +  R  +   L     
Sbjct: 122 VYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPA 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
             + + ++R      +A   +A   +A  ++G+ R A  L  +   ++ 
Sbjct: 181 GHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSA 229


>gi|118103080|ref|XP_001232112.1| PREDICTED: similar to ATP-dependent Lon protease [Gallus gallus]
          Length = 790

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 73/192 (38%), Gaps = 33/192 (17%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI  ++ R      +L F GPPG+GKT++A+ +AR L   +   S
Sbjct: 380 EDHYGMDDVKKRILEFIAVSQLRGSTQGKILCFYGPPGVGKTSIARSIARALNREYFRFS 439

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ ++    +        
Sbjct: 440 VGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLILIDEVDKIGRGYQGDPSSALL 499

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V ++LS+   I        +  PL+DR  + I ++ 
Sbjct: 500 ELLDPEQNSNFLD-------HYLDVPVDLSKVLFICTANVTETIPEPLRDRMEV-INVSG 551

Query: 183 YEIEDLKTIVQR 194
           Y  E+   I +R
Sbjct: 552 YVAEEKLAIAER 563


>gi|25083981|gb|AAN72146.1| putative cell division control protein [Arabidopsis thaliana]
          Length = 819

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 62/268 (23%), Positives = 94/268 (35%), Gaps = 35/268 (13%)

Query: 26  TLEEFTGQVEACSNLK--VFIEA------AKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           T ++F G  +    L+  V           K   +    +LF GPPG GKT LA  +A E
Sbjct: 230 TFKDFGGIKKILDELEMNVLFPILNPEPFKKIGVKPPSGILFHGPPGCGKTKLANAIANE 289

Query: 78  LGVNFRSTSG-PVIAKAG-----DLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM 129
            GV F   S   VI+        ++  L +        ++FIDEI  +    E       
Sbjct: 290 AGVPFYKISATEVISGVSGASEENIRELFSKAYRTAPSIVFIDEIDAIGSKRENQQREME 349

Query: 130 EDFQLDLMV-GEGPSARSVKI----NLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNF 182
           +     L+   +GP  +  K     +     +I AT R   L   L+   RF   I L  
Sbjct: 350 KRIVTQLLTCMDGPGNKGDKNAPDSSAGFVLVIGATNRPDALDPALRRSGRFETEIALTA 409

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            + +    I+   A+   L        +    +R TP   G  L  V   A         
Sbjct: 410 PDEDARAEILSVVAQKLRLE----GPFDKKRIARLTPGFVGADLESVAYLA--------G 457

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTM 270
           R+     L     ++ G  + D  +L M
Sbjct: 458 RKAIKRILDSRKSEQSGDGEDDKSWLRM 485


>gi|30678379|ref|NP_186810.2| CDC48C; ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide
           binding [Arabidopsis thaliana]
 gi|28201773|sp|Q9SS94|CD48C_ARATH RecName: Full=Cell division control protein 48 homolog C;
           Short=AtCDC48c; AltName: Full=Protein EMBRYO DEFECTIVE
           1354
 gi|22531209|gb|AAM97108.1| putative cell division control protein [Arabidopsis thaliana]
 gi|332640174|gb|AEE73695.1| cell division cycle 48C protein [Arabidopsis thaliana]
          Length = 820

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 62/268 (23%), Positives = 94/268 (35%), Gaps = 35/268 (13%)

Query: 26  TLEEFTGQVEACSNLK--VFIEA------AKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           T ++F G  +    L+  V           K   +    +LF GPPG GKT LA  +A E
Sbjct: 231 TFKDFGGIKKILDELEMNVLFPILNPEPFKKIGVKPPSGILFHGPPGCGKTKLANAIANE 290

Query: 78  LGVNFRSTSG-PVIAKAG-----DLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM 129
            GV F   S   VI+        ++  L +        ++FIDEI  +    E       
Sbjct: 291 AGVPFYKISATEVISGVSGASEENIRELFSKAYRTAPSIVFIDEIDAIGSKRENQQREME 350

Query: 130 EDFQLDLMV-GEGPSARSVKI----NLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNF 182
           +     L+   +GP  +  K     +     +I AT R   L   L+   RF   I L  
Sbjct: 351 KRIVTQLLTCMDGPGNKGDKNAPDSSAGFVLVIGATNRPDALDPALRRSGRFETEIALTA 410

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            + +    I+   A+   L        +    +R TP   G  L  V   A         
Sbjct: 411 PDEDARAEILSVVAQKLRLE----GPFDKKRIARLTPGFVGADLESVAYLA--------G 458

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTM 270
           R+     L     ++ G  + D  +L M
Sbjct: 459 RKAIKRILDSRKSEQSGDGEDDKSWLRM 486


>gi|332978483|gb|EGK15195.1| DNA polymerase III, gamma/tau subunit DnaX [Psychrobacter sp.
           1501(2011)]
          Length = 789

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 58/296 (19%), Positives = 92/296 (31%), Gaps = 68/296 (22%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLA 71
            Q        RP+   E  GQ      L   I+        L H  LF G  G+GKTT+A
Sbjct: 3   QQYQVLARKYRPKNFHELVGQSHVSKALINAID-----HNRLHHAYLFTGTRGVGKTTIA 57

Query: 72  QVVARELGVNFRSTS------------------------GPVIAKAGDLAALLTNL---- 103
           +++++ L      TS                             K  D   L+ N+    
Sbjct: 58  RILSKCLNCETGVTSTPCGVCSSCVAIDQGRYIDLIEIDAASRTKVEDTRELIDNVAYAP 117

Query: 104 --EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATT 161
                 V  IDE+H LS      L   +E+                    +    + ATT
Sbjct: 118 TQGRYKVYLIDEVHMLSTHSFNALLKTLEE------------------PPAHVKFLLATT 159

Query: 162 RVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRI 221
               L   +  R  +   L     + +   +     L G+  T  A  ++A  ++G+ R 
Sbjct: 160 DPQKLPITIISRC-LQFVLRPLPQQAISDHLANLLTLEGVNYTQPALWQLANAAKGSLRD 218

Query: 222 AGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGG 277
           A  L     D A       +T E  +  L          D  D   ++++   + G
Sbjct: 219 ALSL----TDQAIAFGEGALTDETVNDMLGL-------IDSAD--LVSLLLDIYQG 261


>gi|325694344|gb|EGD36257.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
           SK150]
          Length = 556

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 47/270 (17%), Positives = 81/270 (30%), Gaps = 53/270 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     R +T  +  GQ    + L+  +E  K         LF GP G GKT++A++ A+
Sbjct: 4   ALYRKYRSQTFGQLVGQQVVATTLRQAVEQGKISHAY----LFSGPRGTGKTSVAKIFAK 59

Query: 77  ELGVNFR------------------------STSGPVIAKAGDLAALLTN------LEDR 106
            +    +                                   ++  +         L   
Sbjct: 60  AMNCPNQKDGEPCNDCYICQAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLAKH 119

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
            V  IDE+H LS      L   +E+                         I ATT +  +
Sbjct: 120 KVYIIDEVHMLSTGAFNALLKTLEEPT------------------ENVVFILATTELHKI 161

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
              +  R       +    + +  I +   +  G+    E    IA R+ G  R A  +L
Sbjct: 162 PATILSRVQRFEFKSIKTQDIIGHI-EWILEREGIDFEQEGVQIIARRAEGGMRDALSIL 220

Query: 227 RRVRDFAEVAHAKTITREIADAALLRLAID 256
            +     +     T   E    ++   A+D
Sbjct: 221 DQALSLTQENCLTTDIAEEITGSISLGALD 250


>gi|321264422|ref|XP_003196928.1| DNA replication factor (activator 1 subunit) [Cryptococcus gattii
           WM276]
 gi|317463406|gb|ADV25141.1| DNA replication factor (activator 1 subunit), putative
           [Cryptococcus gattii WM276]
          Length = 363

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 70/224 (31%), Gaps = 20/224 (8%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+T+++ + Q    + L+  +      +  L H+LF GPPG GKT+    +AR
Sbjct: 19  PWVEKYRPKTIDDVSSQDNTVAVLRKAL-----ASTNLPHMLFYGPPGTGKTSTILALAR 73

Query: 77  E------LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           +              +         +   + +           +        E   P  +
Sbjct: 74  QLFGPDLFRARVLELNASDERGISVVREKIKSFARETPRHASGVSSDGK---EYPCPPFK 130

Query: 131 DFQLDLMVGEGPSA----RSVKINLSRFTLIAA-TTRVGLLTNPLQDRFGIPIRLNFYEI 185
              LD        A    R +    S+ T        V  +  PL  R     R    E 
Sbjct: 131 LIILDEADSMTQDAQSALRRIMETYSKITRFCLVCNYVTRIIEPLASRCS-KFRFKPLEQ 189

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           E  +  ++  A+  G+         I   + G  R A   L+  
Sbjct: 190 ESTRARMEMIAENEGVQTDPGVLSLILELAGGDLRKAITYLQTA 233


>gi|257879310|ref|ZP_05658963.1| DNA directed DNA polymerase [Enterococcus faecium 1,230,933]
 gi|257881874|ref|ZP_05661527.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,502]
 gi|257890136|ref|ZP_05669789.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,410]
 gi|257893464|ref|ZP_05673117.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,408]
 gi|258615716|ref|ZP_05713486.1| DNA polymerase III, gamma and tau subunits [Enterococcus faecium
           DO]
 gi|260558752|ref|ZP_05830941.1| DNA directed DNA polymerase [Enterococcus faecium C68]
 gi|261207347|ref|ZP_05922034.1| DNA directed DNA polymerase [Enterococcus faecium TC 6]
 gi|289566854|ref|ZP_06447263.1| DNA-directed DNA polymerase [Enterococcus faecium D344SRF]
 gi|293559588|ref|ZP_06676122.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium E1162]
 gi|293567583|ref|ZP_06678927.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium E1071]
 gi|294615746|ref|ZP_06695596.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium E1636]
 gi|294617671|ref|ZP_06697298.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium E1679]
 gi|294621753|ref|ZP_06700913.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium U0317]
 gi|314937928|ref|ZP_07845244.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
           TX0133a04]
 gi|314941419|ref|ZP_07848312.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
           TX0133C]
 gi|314951281|ref|ZP_07854335.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
           TX0133A]
 gi|314992888|ref|ZP_07858289.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
           TX0133B]
 gi|314998092|ref|ZP_07862980.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
           TX0133a01]
 gi|257813538|gb|EEV42296.1| DNA directed DNA polymerase [Enterococcus faecium 1,230,933]
 gi|257817532|gb|EEV44860.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,502]
 gi|257826496|gb|EEV53122.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,410]
 gi|257829843|gb|EEV56450.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,408]
 gi|260075211|gb|EEW63524.1| DNA directed DNA polymerase [Enterococcus faecium C68]
 gi|260078407|gb|EEW66111.1| DNA directed DNA polymerase [Enterococcus faecium TC 6]
 gi|289161342|gb|EFD09233.1| DNA-directed DNA polymerase [Enterococcus faecium D344SRF]
 gi|291589684|gb|EFF21488.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium E1071]
 gi|291591397|gb|EFF23056.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium E1636]
 gi|291596078|gb|EFF27344.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium E1679]
 gi|291598640|gb|EFF29697.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium U0317]
 gi|291606464|gb|EFF35864.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium E1162]
 gi|313587934|gb|EFR66779.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
           TX0133a01]
 gi|313592692|gb|EFR71537.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
           TX0133B]
 gi|313596498|gb|EFR75343.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
           TX0133A]
 gi|313599842|gb|EFR78685.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
           TX0133C]
 gi|313642786|gb|EFS07366.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
           TX0133a04]
          Length = 581

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 52/298 (17%), Positives = 100/298 (33%), Gaps = 38/298 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN- 81
           R +  E+  GQ      LK  I + K         LF GP G GKT+ A++ A+ +    
Sbjct: 11  RSQRFEDIVGQKAVTQTLKNAIVSHKTSHAY----LFTGPRGTGKTSAAKIFAKAINCPN 66

Query: 82  ------------FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
                        RS +        ++ A   N  + ++ FI +    +         A 
Sbjct: 67  SKDGEPCNECEMCRSITAGTQEDVIEIDAASNNGVE-EIRFIRDRANYAPTK-----AAY 120

Query: 130 EDFQLDLMVGEGPSA-----RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           + + +D +      A     ++++        I ATT    +   +  R           
Sbjct: 121 KVYIIDEVHMLSTGAFNALLKTLEEPKESVIFILATTEPHKIPATIISRTQRFDFKRINT 180

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            + +   ++   K + ++    A   IA  + G  R A  +L +   F+E     TIT +
Sbjct: 181 AD-IVEHLEFILKESTISYEPAALNVIARSAEGGMRDALSILDQAISFSE----GTITLD 235

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
                        +  + +D      + +        +  I A   E R  +ED+++ 
Sbjct: 236 D-----AMQVTGSLTDEMMDSYLSACVKKEVPEALETLNQILAAGKESRRFLEDMLQY 288


>gi|254414024|ref|ZP_05027792.1| DNA polymerase III, subunits gamma and tau [Microcoleus
           chthonoplastes PCC 7420]
 gi|196179160|gb|EDX74156.1| DNA polymerase III, subunits gamma and tau [Microcoleus
           chthonoplastes PCC 7420]
          Length = 379

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/240 (19%), Positives = 75/240 (31%), Gaps = 56/240 (23%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGV- 80
           RP+ L E  GQ      L       + +   L +V LF GP G GKT+ A++ A+ L   
Sbjct: 15  RPQNLSELVGQPLIVRTL-----TNELKTGNLPNVFLFDGPRGTGKTSTARIFAKSLNCL 69

Query: 81  -------------------------NFRSTSGPVIAKAGDLAALLTNLEDRD-----VLF 110
                                    + R           D+  L+   +        +++
Sbjct: 70  SSSQPTLTPCGTCLSCRSICSGSNLDVRELDAASNNGVDDIRELINYSKLSTTNRYRIIY 129

Query: 111 IDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           +DE   LS   +       ED                   L     I ATT    L + +
Sbjct: 130 LDECQMLSRSAQNAALKLFEDR------------------LPNTIFILATTESEKLLDTI 171

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
             R            +  + + Q       ++   EA   IA  S+G  R + +LL ++ 
Sbjct: 172 ISRCQHFQFRRLSTQDITERLSQITLNE-KISANPEALRLIAQHSQGGMRDSVQLLEQLA 230


>gi|165975723|ref|YP_001651316.1| DNA polymerase III subunits gamma and tau [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|307245079|ref|ZP_07527172.1| DNA polymerase III subunits gamma and tau [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307254034|ref|ZP_07535881.1| DNA polymerase III subunits gamma and tau [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|165875824|gb|ABY68872.1| DNA polymerase III subunits gamma and tau [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|306853968|gb|EFM86180.1| DNA polymerase III subunits gamma and tau [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306862959|gb|EFM94906.1| DNA polymerase III subunits gamma and tau [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
          Length = 688

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/245 (17%), Positives = 77/245 (31%), Gaps = 55/245 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+   E  GQ    S L+  +   +     L H  LF G  G+GKT++A++ A+ L   
Sbjct: 11  RPQRFSEVVGQQHVLSALENGLREGR-----LHHAYLFSGTRGVGKTSIARLFAKGLNCE 65

Query: 82  F------------------------RSTSGPVIAKAGDLAALLTNLEDRD------VLFI 111
                                             K  D   LL N++ +       V  I
Sbjct: 66  TGITATPCGECANCKAIEEGRFIDLIEIDAASRTKVEDTRELLDNVQYKPTVGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSRHSFNALLKTLEE------------------PPEYVKFLLATTDPQKLPITIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L   +   +   ++   +   +     A  ++A  ++G+ R +  L  +   
Sbjct: 168 SRC-MQFHLRALDQAQIANHLEFILQQENIPYESAAIEKLAKAAQGSIRDSLSLTDQAIA 226

Query: 232 FAEVA 236
            +   
Sbjct: 227 VSNAN 231


>gi|313680933|ref|YP_004058672.1| DNA polymerase III subunits gamma/tau [Oceanithermus profundus DSM
           14977]
 gi|313153648|gb|ADR37499.1| DNA polymerase III, subunits gamma and tau [Oceanithermus profundus
           DSM 14977]
          Length = 615

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 82/224 (36%), Gaps = 27/224 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP T +   GQ      LK  I+      + L H  LF GP G+GKTT A+++A  +G  
Sbjct: 12  RPATFDAVVGQEHVKDVLKSAIQ-----KDRLAHAYLFSGPRGVGKTTTARLIAMSVGCA 66

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSII-----VEEILYPAMEDFQL 134
                 P     G+        EDR  DV+ ID     S+       E IL   +   + 
Sbjct: 67  AE----PENRPCGECENCRMVREDRHPDVVEIDAASNNSVEDVRELRERILLAPLVAPRK 122

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
            +++ E             ++++        I ATT    +   +  R     R      
Sbjct: 123 VIILDEAHMMSKSAFNALLKTLEEPPEHVIFIFATTEPERMPATILSRTQ-HFRFRRLSE 181

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           E++   +    +  G     EA   IA  S G  R A  +L R+
Sbjct: 182 EEIAGKLAAVLEAEGRRAEPEALRLIARMSGGAMRDAESILDRL 225


>gi|296421944|ref|XP_002840523.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295636741|emb|CAZ84714.1| unnamed protein product [Tuber melanosporum]
          Length = 387

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 57/166 (34%), Gaps = 30/166 (18%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP TL + +G  +  + +  F++  +     L H+LF GPPG GKT+    +AR
Sbjct: 44  PWVEKYRPDTLNDVSGHEDILTTINKFVQTNR-----LPHLLFYGPPGTGKTSTILALAR 98

Query: 77  E-------------------LGVNFRSTSGPVIAKAGDLAALLTN----LEDRDVLFIDE 113
                                G+          A    +    T     L    ++ +DE
Sbjct: 99  HIYGAHNIRQQVLELNASDDRGIEVVREQIKTFASTKQIFGASTKTDGELGSFKLIILDE 158

Query: 114 IHRLSIIVEEILYPAMEDFQLD--LMVGEGPSARSVKINLSRFTLI 157
              ++   +  L   ME +  +    +    + +     LSR T  
Sbjct: 159 ADAMTSTAQNALRRIMEKYTANTRFCIIANYTHKLNAALLSRCTRF 204


>gi|190149536|ref|YP_001968061.1| DNA polymerase III subunit gamma/tau [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|189914667|gb|ACE60919.1| DNA polymerase III subunit gamma/tau [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
          Length = 688

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/245 (17%), Positives = 77/245 (31%), Gaps = 55/245 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+   E  GQ    S L+  +   +     L H  LF G  G+GKT++A++ A+ L   
Sbjct: 11  RPQRFSEVVGQQHVLSALENGLREGR-----LHHAYLFSGTRGVGKTSIARLFAKGLNCE 65

Query: 82  F------------------------RSTSGPVIAKAGDLAALLTNLEDRD------VLFI 111
                                             K  D   LL N++ +       V  I
Sbjct: 66  TGITATPCGECANCKAIEEGRFIDLIEIDAASRTKVEDTRELLDNVQYKPTVGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSRHSFNALLKTLEE------------------PPEYVKFLLATTDPQKLPITIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L   +   +   ++   +   +     A  ++A  ++G+ R +  L  +   
Sbjct: 168 SRC-MQFHLRALDQAQIANHLEFILQQENIPYESVAIEKLAKAAQGSIRDSLSLTDQAIA 226

Query: 232 FAEVA 236
            +   
Sbjct: 227 VSNAN 231


>gi|229581753|ref|YP_002840152.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus
           Y.N.15.51]
 gi|228012469|gb|ACP48230.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus
           Y.N.15.51]
          Length = 759

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 58/247 (23%), Positives = 89/247 (36%), Gaps = 30/247 (12%)

Query: 9   SRNVSQEDADISLLRPR-TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLF 59
           S  + QE    + + P+ T E+     +    ++  +E      E   H        VL 
Sbjct: 171 SLEIRQEPVKETAVVPKVTWEDIGDLEDVKEKIREIVELPMRHPEVFQHLGIEPPKGVLL 230

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFI 111
            GPPG+GKT LA+ +A E+G  F S +GP I           L  +    E     ++FI
Sbjct: 231 YGPPGVGKTLLARALANEIGAYFTSINGPEIMSKFYGESEQRLREIFEEAEKNAPAIIFI 290

Query: 112 DEIHRLSIIVEEILYPA---MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           DEI  ++   EE+       +    L LM G     + + I         AT R   +  
Sbjct: 291 DEIDAIAPKREEVTGEVEKRVVSQLLTLMDGIKGRGKVIVI--------GATNRPDAVDP 342

Query: 169 PLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
            L+   RF   I +   + +  K I+Q   +   LA   +           T      L 
Sbjct: 343 ALRRPGRFDREIEIRPPDAKARKEILQVHTRNMPLAEDVDLDKISEQTHGYTGADLAALA 402

Query: 227 RRVRDFA 233
           R     A
Sbjct: 403 REAAMNA 409



 Score = 55.9 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 49/193 (25%), Positives = 76/193 (39%), Gaps = 22/193 (11%)

Query: 28  EEFTGQVEACSNLKVFIE--------AAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           E+  G  EA   L+  +E          K        +L  GPPG GKT LA+ VA E G
Sbjct: 466 EDIGGLEEAKQQLREAVEWPLKFPEMFEKLGIRPPKGILLFGPPGTGKTMLAKAVATESG 525

Query: 80  VNFRSTSGPVI--AKAGDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAMED 131
            NF +  GP I     G+    +  +  R       V+F DEI  ++ +         + 
Sbjct: 526 ANFIAVRGPEILSKWVGESEKAVREIFRRARQTAPCVIFFDEIDSIAPMR----GFTHDS 581

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
              + +V +  S      +L+R  +IAAT R  +L   L    RF   I +   + +   
Sbjct: 582 GVTERIVNQLLSEMDGIQSLNRVVVIAATNRPDILDPALLRPGRFDRLIYVPPPDEKARI 641

Query: 190 TIVQRGAKLTGLA 202
            I++   K   + 
Sbjct: 642 EILKIYTKTLPID 654


>gi|297832780|ref|XP_002884272.1| hypothetical protein ARALYDRAFT_896083 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297330112|gb|EFH60531.1| hypothetical protein ARALYDRAFT_896083 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 821

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 59/268 (22%), Positives = 92/268 (34%), Gaps = 35/268 (13%)

Query: 26  TLEEFTGQVEACSNLK--VFIEA------AKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           T ++F G  +    L+  V           K   +    +LF GPPG GKT LA  +A E
Sbjct: 231 TFKDFGGIKKVLDELEMNVLFPILNPEPFKKIGVKPPSGILFHGPPGCGKTKLANAIANE 290

Query: 78  LGVNFRSTSGPV----IAKAGD--LAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM 129
           +GV F   S       ++ A +  +  L +        ++FIDEI  +    E       
Sbjct: 291 VGVPFFKISATEVVSGVSGASEENIRELFSKAYRTAPSIVFIDEIDAIGSKRENQQREME 350

Query: 130 EDFQLDLMVGEGPSARSVKINLSR-----FTLIAATTRVGLLTNPLQD--RFGIPIRLNF 182
           +     L+          + N+         +I AT R   L   L+   RF   I L  
Sbjct: 351 KRIVTQLLTCMDGPGNKGEKNVPDSSAGFVLVIGATNRPDALDPALRRSGRFECEIALTA 410

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            + +    I+   A+   L        +    +R TP   G  L  V   A         
Sbjct: 411 PDEDARAEILSVVAQKLRLE----GPFDKKRIARLTPGFVGADLESVAYLA--------G 458

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTM 270
           R+     L     ++ G  + D  +L M
Sbjct: 459 RKAIKRILDSRKSEQSGDGEDDKSWLRM 486


>gi|260947222|ref|XP_002617908.1| hypothetical protein CLUG_01367 [Clavispora lusitaniae ATCC 42720]
 gi|238847780|gb|EEQ37244.1| hypothetical protein CLUG_01367 [Clavispora lusitaniae ATCC 42720]
          Length = 809

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/200 (23%), Positives = 75/200 (37%), Gaps = 12/200 (6%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLED 105
           E    VL  GPPG GKTT+A  +A EL V F + S P +           L  +      
Sbjct: 216 EPPRGVLLYGPPGCGKTTIANALAGELQVPFINISAPSVVSGMSGESEKKLREIFEEARS 275

Query: 106 RD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
               ++F+DEI  ++   +      ME   +  ++         K +     ++ AT R 
Sbjct: 276 LAPCIIFMDEIDAITPKRDGGAQREMERRIVAQLLTLMDELTLDKTDGKPVVVLGATNRP 335

Query: 164 GLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRI 221
             L + L+   RF   I LN    +    I++       L     +       ++ TP  
Sbjct: 336 DSLDSALRRAGRFDREICLNVPNEDQRCAILKTMTSSLKLEND--SGFNYRELAKMTPGF 393

Query: 222 AGRLLRRVRDFAEVAHAKTI 241
            G  L+ +   A ++  K I
Sbjct: 394 VGADLKSLVTAAGISAIKRI 413



 Score = 45.5 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 56/156 (35%), Gaps = 15/156 (9%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLED 105
           K    A   VL  GPPG GKT LA+ VA E   NF S  GP +     G+    +  +  
Sbjct: 538 KVGISAPAGVLMWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESEKAVRQVFQ 597

Query: 106 RD------VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA 159
           R       ++F DE+  L       L  +       L+            +     ++ A
Sbjct: 598 RARASAPCIIFFDELDALVPRRTSSLSESSARVVNTLLTELDGLN-----DRQGIFVVGA 652

Query: 160 TTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQ 193
           T R  ++   +    R    + +     E+   I++
Sbjct: 653 TNRPDMIDPAMLRPGRLDKTLYIELPTAEERLEILR 688


>gi|11559504|gb|AAG37987.1|AF071409_1 replication factor C subunit 2 [Plasmodium falciparum]
          Length = 330

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 78/218 (35%), Gaps = 14/218 (6%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+ L++   Q  A   LK  +     R + + H++F GPPG GKT+    +A 
Sbjct: 5   PWVEKYRPKRLDDIVHQNNAVMMLKEVV-----RTKNMPHLIFHGPPGTGKTSAINALAH 59

Query: 77  E------LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE-EILYPAM 129
           E      +       +         +   +       +   ++IH  +  V        +
Sbjct: 60  ELFGKENISERVLELNASDDRGINVVREKIKAYTRISIS-KNKIHSETKEVLPSWKLVVL 118

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           ++  +     +    R ++I  +    I     +  +++P+  R       +   I   K
Sbjct: 119 DEADMMTEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIFSRCSCYRFQSI-PINIKK 177

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             +    +   + + D+A  +I   + G  R A  +L+
Sbjct: 178 EKLLYICQNENIDIVDDALEKIIETTEGDLRRAVSILQ 215


>gi|312171607|emb|CBX79865.1| DNA polymerase III, tau and gamma subunits [Erwinia amylovora ATCC
           BAA-2158]
          Length = 643

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 55/306 (17%), Positives = 102/306 (33%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+   E  GQ    + L        +        LF G  G+GKTT+A+++A+  G+N 
Sbjct: 11  RPQAFTEVVGQQHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTTIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGQCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++        + ATT    L   +  R  +   L   + E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDQEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  +Q       ++    A   +A  + G+ R A  L     D A       +T    + 
Sbjct: 184 RGQLQHVLHAETISAESRALQLLARAADGSMRDALSL----TDQAIAMGQGQVTTATVND 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L       D+  L  +  +    G   + +   +A      +A+   +   + +  
Sbjct: 240 MLGMLD------DEQPLALIEALVHADGAQVMALVNQAATRGVEWEALLVEMLTLLHRVA 293

Query: 309 FIQRTP 314
            IQ  P
Sbjct: 294 MIQLLP 299


>gi|15595134|ref|NP_212923.1| cell division protein (ftsH) [Borrelia burgdorferi B31]
 gi|195942000|ref|ZP_03087382.1| cell division protein (ftsH) [Borrelia burgdorferi 80a]
 gi|216264644|ref|ZP_03436636.1| cell division protein FtsH [Borrelia burgdorferi 156a]
 gi|218249315|ref|YP_002375288.1| cell division protein FtsH [Borrelia burgdorferi ZS7]
 gi|221217602|ref|ZP_03589071.1| cell division protein FtsH [Borrelia burgdorferi 72a]
 gi|224533427|ref|ZP_03674020.1| cell division protein FtsH [Borrelia burgdorferi CA-11.2a]
 gi|225549393|ref|ZP_03770365.1| cell division protein FtsH [Borrelia burgdorferi 94a]
 gi|225550274|ref|ZP_03771233.1| cell division protein FtsH [Borrelia burgdorferi 118a]
 gi|226321220|ref|ZP_03796754.1| cell division protein FtsH [Borrelia burgdorferi 29805]
 gi|310943120|sp|B7J0N5|FTSH_BORBZ RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|2688712|gb|AAC67120.1| cell division protein (ftsH) [Borrelia burgdorferi B31]
 gi|215981117|gb|EEC21924.1| cell division protein FtsH [Borrelia burgdorferi 156a]
 gi|218164503|gb|ACK74564.1| cell division protein FtsH [Borrelia burgdorferi ZS7]
 gi|221192548|gb|EEE18766.1| cell division protein FtsH [Borrelia burgdorferi 72a]
 gi|224513389|gb|EEF83747.1| cell division protein FtsH [Borrelia burgdorferi CA-11.2a]
 gi|225369142|gb|EEG98596.1| cell division protein FtsH [Borrelia burgdorferi 118a]
 gi|225370021|gb|EEG99462.1| cell division protein FtsH [Borrelia burgdorferi 94a]
 gi|226233374|gb|EEH32121.1| cell division protein FtsH [Borrelia burgdorferi 29805]
 gi|312148114|gb|ADQ30773.1| cell division protein FtsH [Borrelia burgdorferi JD1]
          Length = 639

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 59/270 (21%), Positives = 98/270 (36%), Gaps = 33/270 (12%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ E    L+  +E  K         A+    VL VG PG GKT LA+ VA E 
Sbjct: 170 TFKDVAGQEEVKQELREVVEFLKNPKKFEKIGAKIPKGVLLVGSPGTGKTLLAKAVAGEA 229

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV+F   SG       V   A  +  L  N       ++FIDE+  +       L    +
Sbjct: 230 GVSFFHMSGSDFVEMFVGVGASRVRDLFDNARKNSPCIIFIDELDAVGRSRGAGLGGGHD 289

Query: 131 DFQLDL------MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNF 182
           + +  L      M G G     +        ++AAT R  +L + L    RF   + ++ 
Sbjct: 290 EREQTLNQLLVEMDGFGTHTNVI--------VMAATNRPDVLDSALLRPGRFDRQVTVSL 341

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            +I++ + I+   +  T L+               +      L+      A   +   I 
Sbjct: 342 PDIKEREAILNIHSLKTKLSKDINLQVIARATPGASGADLANLINEGALIAARNNQDEIL 401

Query: 243 REIADAALLR--LAIDKMGFDQLDLRYLTM 270
            +  + A  +  + + K      D + L  
Sbjct: 402 MKDMEEARDKILMGVAKKSMTITDRQKLET 431


>gi|69248217|ref|ZP_00604680.1| DNA-directed DNA polymerase [Enterococcus faecium DO]
 gi|68194503|gb|EAN09000.1| DNA-directed DNA polymerase [Enterococcus faecium DO]
          Length = 400

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 52/298 (17%), Positives = 100/298 (33%), Gaps = 38/298 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN- 81
           R +  E+  GQ      LK  I + K         LF GP G GKT+ A++ A+ +    
Sbjct: 11  RSQRFEDIVGQKAVTQTLKNAIVSHKTSHAY----LFTGPRGTGKTSAAKIFAKAINCPN 66

Query: 82  ------------FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
                        RS +        ++ A   N  + ++ FI +    +         A 
Sbjct: 67  SKDGEPCNECEMCRSITAGTQEDVIEIDAASNNGVE-EIRFIRDRANYAPTK-----AAY 120

Query: 130 EDFQLDLMVGEGPSA-----RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           + + +D +      A     ++++        I ATT    +   +  R           
Sbjct: 121 KVYIIDEVHMLSTGAFNALLKTLEEPKESVIFILATTEPHKIPATIISRTQRFDFKRINT 180

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            + +   ++   K + ++    A   IA  + G  R A  +L +   F+E     TIT +
Sbjct: 181 AD-IVEHLEFILKESTISYEPAALNVIARSAEGGMRDALSILDQAISFSE----GTITLD 235

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
                        +  + +D      + +        +  I A   E R  +ED+++ 
Sbjct: 236 D-----AMQVTGSLTDEMMDSYLSACVKKEVPEALETLNQILAAGKESRRFLEDMLQY 288


>gi|302822922|ref|XP_002993116.1| hypothetical protein SELMODRAFT_2943 [Selaginella moellendorffii]
 gi|300139007|gb|EFJ05756.1| hypothetical protein SELMODRAFT_2943 [Selaginella moellendorffii]
          Length = 220

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 76/226 (33%), Gaps = 31/226 (13%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ      L      A  R       LF GP G GKT+ A+++A  L    
Sbjct: 7   RPKTFRDIVGQNMLVQALG----NAVTRGRIAPVYLFHGPRGTGKTSAAKILAAALNCVS 62

Query: 83  RSTSGP----------VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
              + P           + K+GD+  +       DV   D    +  ++ + +       
Sbjct: 63  VEDTRPCGVCRECLLLCLGKSGDVKEV-------DVASHDSTSLMKKLLMDAVVGPSSGR 115

Query: 133 QLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
               ++ E             + ++        I  TT    L +P   R          
Sbjct: 116 YKVFIIDECHTLTAEGWNVFLKCLEEPPEHAVFILTTTDTEQLPHPASTRCQKFHFPKIK 175

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           + + +   +Q  A    L V  +A   IA RS G+ R A   L ++
Sbjct: 176 DSDVVSR-LQALAAKESLEVEKDALDLIAARSGGSLRDAETTLDQL 220


>gi|269217441|ref|ZP_06161295.1| DNA polymerase III, subunit gamma and tau [Actinomyces sp. oral
           taxon 848 str. F0332]
 gi|269213062|gb|EEZ79402.1| DNA polymerase III, subunit gamma and tau [Actinomyces sp. oral
           taxon 848 str. F0332]
          Length = 401

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/173 (23%), Positives = 62/173 (35%), Gaps = 22/173 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP+T +E  GQ          I AA          LF GP G GKTT A+++AR
Sbjct: 2   ALYRRYRPQTFQEVIGQEHVTRP----IMAALRADRTAHAYLFSGPRGCGKTTSARILAR 57

Query: 77  ELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PA 128
            L      T  P  V     +L+  L      DV+ +D      +     L       PA
Sbjct: 58  CLNCAEAPTDTPCGVCESCRELS--LGGGGSLDVVEMDAASHGGVDDARELIERAAFAPA 115

Query: 129 MEDFQLDLMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
            + +++ ++         G     + V+        + ATT    +   ++ R
Sbjct: 116 RDRYKIFIIDEAHMVSNQGFNALLKLVEEPPPHVKFVFATTEPEKVIGTIRSR 168


>gi|124801405|ref|XP_001349685.1| replication factor C, subunit 2 [Plasmodium falciparum 3D7]
 gi|3845290|gb|AAC71957.1| replication factor C, subunit 2 [Plasmodium falciparum 3D7]
          Length = 330

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 78/218 (35%), Gaps = 14/218 (6%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+ L++   Q  A   LK  +     R + + H++F GPPG GKT+    +A 
Sbjct: 5   PWVEKYRPKRLDDIVHQNNAVMMLKEVV-----RTKNMPHLIFHGPPGTGKTSAINALAH 59

Query: 77  E------LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE-EILYPAM 129
           E      +       +         +   +       +   ++IH  +  V        +
Sbjct: 60  ELFGKENISERVLELNASDDRGINVVREKIKAYTRISIS-KNKIHSETKEVLPSWKLVVL 118

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           ++  +     +    R ++I  +    I     +  +++P+  R       +   I   K
Sbjct: 119 DEADMMTEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIFSRCSCYRFQSI-PINIKK 177

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             +    +   + + D+A  +I   + G  R A  +L+
Sbjct: 178 EKLLYICQNENIDIVDDALEKIIETTEGDLRRAVSILQ 215


>gi|307247251|ref|ZP_07529300.1| DNA polymerase III subunits gamma and tau [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306856224|gb|EFM88378.1| DNA polymerase III subunits gamma and tau [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
          Length = 688

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/245 (17%), Positives = 77/245 (31%), Gaps = 55/245 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+   E  GQ    S L+  +   +     L H  LF G  G+GKT++A++ A+ L   
Sbjct: 11  RPQRFSEVVGQQHVLSALENGLREGR-----LHHAYLFSGTRGVGKTSIARLFAKGLNCE 65

Query: 82  F------------------------RSTSGPVIAKAGDLAALLTNLEDRD------VLFI 111
                                             K  D   LL N++ +       V  I
Sbjct: 66  TGITATPCGECANCKAIEEGRFIDLIEIDAASRTKVEDTRELLDNVQYKPTVGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSRHSFNALLKTLEE------------------PPEYVKFLLATTDPQKLPITIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L   +   +   ++   +   +     A  ++A  ++G+ R +  L  +   
Sbjct: 168 SRC-MQFHLRALDQAQIANHLEFILQQENIPYESVAIEKLAKAAQGSIRDSLSLTDQAIA 226

Query: 232 FAEVA 236
            +   
Sbjct: 227 VSNAN 231


>gi|295676458|ref|YP_003604982.1| DNA polymerase III, subunits gamma and tau [Burkholderia sp.
           CCGE1002]
 gi|295436301|gb|ADG15471.1| DNA polymerase III, subunits gamma and tau [Burkholderia sp.
           CCGE1002]
          Length = 838

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 45/253 (17%), Positives = 89/253 (35%), Gaps = 28/253 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+      GQ      L   ++  +     L H  LF G  G+GKTTL+++ A+ L   
Sbjct: 11  RPKDFASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAMEDFQL 134
              TS P     G   A     E R V +++        +  ++ ++E  +Y  ++    
Sbjct: 66  TGVTSTP----CGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             M+ E             ++++        I ATT    +   +  R  +   L     
Sbjct: 122 VYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPA 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
             + + ++R      +    +A   +A  + G+ R A  L  +   ++            
Sbjct: 181 GHIVSHLERILGEENVPHEAQALRLLARAADGSMRDALSLTDQAIAYSA-NQVSEDAVRG 239

Query: 246 ADAALLRLAIDKM 258
              AL +  + ++
Sbjct: 240 MLGALDQSYLIRL 252


>gi|83859372|ref|ZP_00952893.1| DNA polymerase III subunits gamma and tau [Oceanicaulis alexandrii
           HTCC2633]
 gi|83852819|gb|EAP90672.1| DNA polymerase III subunits gamma and tau [Oceanicaulis alexandrii
           HTCC2633]
          Length = 586

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 63/328 (19%), Positives = 110/328 (33%), Gaps = 59/328 (17%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+T ++  GQ      +   +  A A        +  G  G+GKTT A+++AR L
Sbjct: 39  ARKYRPQTFDDLIGQE----PMVRTLTNAFASGRIAHAYMMTGVRGVGKTTTARLIARAL 94

Query: 79  GVNFRSTSGPVIA--KAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA-------- 128
                    P I     G     +      DV+ +D   R  I     +           
Sbjct: 95  NYETDEVHQPSIRLTPPGRHCDAIARSAHVDVMEMDAASRTGISDIREILDGVRYAPVSA 154

Query: 129 -MEDFQLDLMVGEGPSA-----RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             + + +D +     SA     ++++        I ATT +  +   +  R      L  
Sbjct: 155 RYKVYIIDEVHMLSTSAFNALLKTLEEPPEHVKFIFATTEIRKVPVTVLSRCQ-RFDLKR 213

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH----- 237
            + + L   + R  +    +V  +    IA  + G+ R A  LL +    A+        
Sbjct: 214 VDRDVLTDHLARICEKENASVECDGLAAIARAAEGSVRDALSLLDQAIVQADAGQSVTAD 273

Query: 238 ---------AKTITREIADAALLRLAIDKMGFDQLDLRY----------------LTMIA 272
                     ++   ++ +AAL   A D    D+L  +Y                L  ++
Sbjct: 274 QIRDMLGLADRSRVLDLLEAALENRAKD--ALDELRHQYDTGADPQVLMRDLLDHLHAVS 331

Query: 273 RNFGGGPVGIETISAGLSEPRDAIEDLI 300
           R    GP      SA L E ++ +E L 
Sbjct: 332 RIKAAGP------SADLGEAQETVERLA 353


>gi|32035419|ref|ZP_00135390.1| COG2812: DNA polymerase III, gamma/tau subunits [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126207753|ref|YP_001052978.1| DNA polymerase III subunits gamma and tau [Actinobacillus
           pleuropneumoniae L20]
 gi|126096545|gb|ABN73373.1| DNA polymerase III subunit gamma/tau [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
          Length = 688

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/245 (17%), Positives = 77/245 (31%), Gaps = 55/245 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+   E  GQ    S L+  +   +     L H  LF G  G+GKT++A++ A+ L   
Sbjct: 11  RPQRFSEVVGQQHVLSALENGLREGR-----LHHAYLFSGTRGVGKTSIARLFAKGLNCE 65

Query: 82  F------------------------RSTSGPVIAKAGDLAALLTNLEDRD------VLFI 111
                                             K  D   LL N++ +       V  I
Sbjct: 66  TGITATPCGECANCKAIEEGRFIDLIEIDAASRTKVEDTRELLDNVQYKPTVGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSRHSFNALLKTLEE------------------PPEYVKFLLATTDPQKLPITIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L   +   +   ++   +   +     A  ++A  ++G+ R +  L  +   
Sbjct: 168 SRC-MQFHLRALDQAQIANHLEFILQQENIPYESVAIEKLAKAAQGSIRDSLSLTDQAIA 226

Query: 232 FAEVA 236
            +   
Sbjct: 227 VSNAN 231


>gi|322368817|ref|ZP_08043384.1| AAA family ATPase, CDC48 subfamily protein [Haladaptatus
           paucihalophilus DX253]
 gi|320551548|gb|EFW93195.1| AAA family ATPase, CDC48 subfamily protein [Haladaptatus
           paucihalophilus DX253]
          Length = 753

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 62/261 (23%), Positives = 90/261 (34%), Gaps = 34/261 (13%)

Query: 23  RPR-TLEEFTGQVEACSNLKVFIEA--------AKARAEALDHVLFVGPPGLGKTTLAQV 73
           RP  T E+  G       ++  IE         ++   +    VL  GPPG GKT +A+ 
Sbjct: 184 RPDVTYEDIGGLERELEQVREMIELPMRHPELFSRLGIDPPKGVLLHGPPGTGKTLMAKA 243

Query: 74  VARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEIL 125
           VA E+   F++ SGP I           L  +    E     ++FIDE+  ++   EE  
Sbjct: 244 VANEIDAYFQTISGPEIMSKYYGESEEQLREVFEEAEQNSPAIIFIDELDSIAPKREE-- 301

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183
                      +V +  S           T+IAAT RV  +   L+   RF   I +   
Sbjct: 302 ---AGGDVERRVVAQLLSLMDGLEERGEVTVIAATNRVDAVDPALRRGGRFDREIEIGVP 358

Query: 184 EIEDLKTIVQ---RGAKL-----TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
           + E    I+Q   RG  L           +      A         A   LRRVR   E+
Sbjct: 359 DREGRLEILQVHTRGMPLADGVDLEAYADNTHGFVGADLESLARESAMNALRRVR--PEL 416

Query: 236 AHAKTITREIADAALLRLAID 256
                        +L     D
Sbjct: 417 DLDSEEIPADVLESLKVTEAD 437



 Score = 47.0 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 8/73 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DV 108
           VL  GPPG GKT +A+ VA E   NF S  GP +           +  + +   +    V
Sbjct: 500 VLMYGPPGTGKTLMAKAVANESDSNFISIKGPELLSKWVGESEKGVREVFSKARENAPTV 559

Query: 109 LFIDEIHRLSIIV 121
           +F DEI  ++   
Sbjct: 560 VFFDEIDSIATER 572


>gi|303249577|ref|ZP_07335784.1| DNA polymerase III subunits gamma and tau [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307251796|ref|ZP_07533698.1| DNA polymerase III subunits gamma and tau [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|302651651|gb|EFL81800.1| DNA polymerase III subunits gamma and tau [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306860703|gb|EFM92714.1| DNA polymerase III subunits gamma and tau [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 685

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/245 (17%), Positives = 77/245 (31%), Gaps = 55/245 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+   E  GQ    S L+  +   +     L H  LF G  G+GKT++A++ A+ L   
Sbjct: 11  RPQRFSEVVGQQHVLSALENGLREGR-----LHHAYLFSGTRGVGKTSIARLFAKGLNCE 65

Query: 82  F------------------------RSTSGPVIAKAGDLAALLTNLEDRD------VLFI 111
                                             K  D   LL N++ +       V  I
Sbjct: 66  TGITATPCGECANCKAIEEGRFIDLIEIDAASRTKVEDTRELLDNVQYKPTVGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSRHSFNALLKTLEE------------------PPEYVKFLLATTDPQKLPITIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L   +   +   ++   +   +     A  ++A  ++G+ R +  L  +   
Sbjct: 168 SRC-MQFHLRALDQAQIANHLEFILQQENIPYESVAIEKLAKAAQGSIRDSLSLTDQAIA 226

Query: 232 FAEVA 236
            +   
Sbjct: 227 VSNAN 231


>gi|221208413|ref|ZP_03581416.1| DNA polymerase III, subunits gamma and tau [Burkholderia
           multivorans CGD2]
 gi|221171826|gb|EEE04270.1| DNA polymerase III, subunits gamma and tau [Burkholderia
           multivorans CGD2]
          Length = 387

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 85/229 (37%), Gaps = 27/229 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+      GQ      L   ++  +     L H  LF G  G+GKTTL+++ A+ L   
Sbjct: 11  RPKDFASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAMEDFQL 134
              TS P     G   A     E R V +++        +  ++ ++E  +Y  ++    
Sbjct: 66  TGVTSQP----CGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             M+ E             ++++        I ATT    +   +  R  +   L     
Sbjct: 122 VYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPA 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
             + + ++R      +A   +A   +A  ++G+ R A  L  +   ++ 
Sbjct: 181 GHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSA 229


>gi|332637117|ref|ZP_08415980.1| DNA polymerase III subunits gamma and tau [Weissella cibaria KACC
           11862]
          Length = 610

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 77/229 (33%), Gaps = 27/229 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+   +  GQ      LK  I       +     LF GP G GKT+ A++ A+ +    
Sbjct: 11  RPQKFSDMIGQEVVTKTLKNAI----MTGQTTHAYLFNGPRGTGKTSAAKIFAKAINC-- 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRD---VLFID-----EIHRLSIIVEEILYPAMEDFQL 134
                P+  +   + A+    ++     V+ +D      +  +  I E++ Y   +    
Sbjct: 65  ---LNPINGEPDGVCAMCQAADNGTLGDVIELDAASNNGVDEIREIREDVNYAPTQAKYK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             ++ E             ++++   +    I ATT    +   +  R          + 
Sbjct: 122 VYIIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPQKIPATIISRTQ-RFDFKRIDA 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
           +     +       G    + A   IA  + G  R A  +L +   F +
Sbjct: 181 KAAYDRMTYILDQRGDTYDEAAIRVIANAADGGMRDALSILDQALSFGD 229


>gi|331215451|ref|XP_003320406.1| hypothetical protein PGTG_01318 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309299396|gb|EFP75987.1| hypothetical protein PGTG_01318 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 382

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/236 (18%), Positives = 73/236 (30%), Gaps = 26/236 (11%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           S         I   RP+++E   GQ      L   +  A      L H+LF GPPG GKT
Sbjct: 24  SSQPPAALPWIEKYRPKSIESVQGQEGTTKILSKALNRAD-----LPHMLFYGPPGTGKT 78

Query: 69  TLAQVVARE------LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           +    +AR+      +       +         +   + N     +         S    
Sbjct: 79  STILALARDLFGPELMKSRVLELNASDERGISVVREKIKNFAKVSI---------SPATS 129

Query: 123 EILYPAMEDFQLDLMVGEGPSA----RSVKINLSRFTLIAA-TTRVGLLTNPLQDRFGIP 177
               PA +   LD        A    R +  N S+ T        V  +  P+  R    
Sbjct: 130 GYPCPAYKIIILDEADSMTQDAQSALRRIMENYSKITRFCLICNYVTRIIEPIVSRCS-K 188

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
            R     +   ++ +   + L  + ++D     +   S G  R +   L+     A
Sbjct: 189 FRFKPLSVSGTRSKLTEISTLESIKISDNVLDSLISISAGDLRRSITFLQSASKLA 244


>gi|207343269|gb|EDZ70783.1| YLL034Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 693

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 52/219 (23%), Positives = 81/219 (36%), Gaps = 18/219 (8%)

Query: 28  EEFTGQVEACSNLKVFIEAA--KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRST 85
           ++   Q+     L +           E    VL  GPPG GKT++A  +A EL V F S 
Sbjct: 67  DDVVAQLMELIGLPILHPEIFLSTGVEPPRGVLLHGPPGCGKTSIANALAGELQVPFISI 126

Query: 86  SGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           S P +          K  DL     +L    ++F DEI  ++   +      ME   +  
Sbjct: 127 SAPSVVSGMSGESEKKIRDLFDEARSLAP-CLVFFDEIDAITPKRDGGAQREMERRIVAQ 185

Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQR 194
           ++         K N     +I AT R   L   L+   RF   I LN         I+++
Sbjct: 186 LLTSMDELTMEKTNGKPVIIIGATNRPDSLDAALRRAGRFDREICLNVPNEVSRLHILKK 245

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
            +    +      A + A  ++ TP   G  L+ +   A
Sbjct: 246 MSDNLKID----GAIDFAKLAKLTPGFVGADLKALVTAA 280



 Score = 50.1 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 79/225 (35%), Gaps = 16/225 (7%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLT 101
           K    A   VL  GPPG GKT LA+ VA E   NF S  GP +           +  + T
Sbjct: 417 KVGISAPGGVLLWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESERSIRQVFT 476

Query: 102 NLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA 159
                   V+F DE+  L     +          ++ ++ E       +       +I A
Sbjct: 477 RARASVPCVIFFDELDALVPRR-DTSLSESSSRVVNTLLTELDGLNDRRG----IFVIGA 531

Query: 160 TTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLA-VTDEAACEIAMRSR 216
           T R  ++   +    R    + +     E+   I++   K  G    +D    EI    +
Sbjct: 532 TNRPDMIDPAMLRPGRLDKTLFIELPNTEEKLDIIKTLTKSHGTPLSSDVDFEEIIRNEK 591

Query: 217 GTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
                   L   VR+ + +A  +   +     ++L   +DK   D
Sbjct: 592 CNNFSGADLAALVRESSVLALKRKFFQSEEIQSVLDNDLDKEFED 636


>gi|118347625|ref|XP_001007289.1| ATP-dependent metalloprotease FtsH family protein [Tetrahymena
           thermophila]
 gi|89289056|gb|EAR87044.1| ATP-dependent metalloprotease FtsH family protein [Tetrahymena
           thermophila SB210]
          Length = 888

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 59/238 (24%), Positives = 89/238 (37%), Gaps = 30/238 (12%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVARE 77
              ++  GQ EA   ++ F++  K         A+     L  GPPG GKT LA+  A E
Sbjct: 398 TRFKDVAGQDEAKQEIQEFVDFLKKPAKYKAIGAKLPKGALLTGPPGTGKTLLAKACAGE 457

Query: 78  LGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM 129
            GV F   SG       V   A  +  L    + +   ++FIDEI  +    E  +    
Sbjct: 458 AGVPFFFISGSDFVEMFVGVGASRVRDLFKQAKQQSPSIIFIDEIDAVGRKRENKMGGND 517

Query: 130 E-----DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNF 182
           E     +  L  M G G  A  +        ++AAT R  LL   L    RF   I +  
Sbjct: 518 ERDNTLNQLLVEMDGFGTDANVI--------VLAATNRKELLDPALTRPGRFDRTIEVTN 569

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +I+  K I     K   L  +          +  TP  +G  +  + + A +  A+ 
Sbjct: 570 PDIDGRKQIFMVHLKPLKLHPSKTMEEYAKRLATLTPGFSGADIMNLCNEAAIMAARK 627


>gi|291568075|dbj|BAI90347.1| cell division control protein CDC48 homolog [Arthrospira platensis
           NIES-39]
          Length = 611

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 57/227 (25%), Positives = 86/227 (37%), Gaps = 27/227 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVARE 77
           TL++  G  +    LK  I     R + L          VL VGPPG GKT  A+ +A E
Sbjct: 89  TLKDIGGLNQELKELKELIAIPLKRPDLLVKLGLEPTHGVLLVGPPGTGKTLTARALAEE 148

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
           LGVN+ +  GP +           L A+          ++FIDEI  L+         A+
Sbjct: 149 LGVNYIALVGPEVITKYYGEAEQKLRAIFEKAAKNAPCIIFIDEIDSLAPDR-----SAV 203

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
           E      +V +  S            L+ AT R   L   L+   RF   I+    +I  
Sbjct: 204 EGEVEKRLVAQLLSLMDGFSQNKGVILLGATNRPDHLDPALRRPGRFDREIQFRVPDING 263

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
            K I+Q    +    +  + + ++   +  T    G  L+ V   A 
Sbjct: 264 RKEILQ----VLTRTMPLDDSVDLEFIADRTVGFVGADLKAVCQKAA 306



 Score = 49.3 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 73/184 (39%), Gaps = 21/184 (11%)

Query: 28  EEFTGQVEACSNLKVFIEAA--------KARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           E+  G       L+  +E A        + +A A   +L  GPPG GKT LA+ VA +  
Sbjct: 357 EDIGGLETIKQTLRESVEGALLYPELYKETKARAPKGILLWGPPGTGKTLLAKAVASQAR 416

Query: 80  VNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMED 131
            NF   +GP      V A    +  L       D  V+FIDE+  L+           + 
Sbjct: 417 ANFIGINGPDLLSRWVGASEQAVRELFAKARQADPCVIFIDELDTLAPARGTY---TGDS 473

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
              + +VG+  +      + S   +I AT R   +   L    R  + ++++   ++   
Sbjct: 474 GVSNRVVGQLLTELDGLESGSNILVIGATNRPDAIDPALLRAGRLDLQLKVDLPNLDSRF 533

Query: 190 TIVQ 193
            I+Q
Sbjct: 534 KILQ 537


>gi|15675296|ref|NP_269470.1| DNA polymerase III subunits gamma and tau [Streptococcus pyogenes
           M1 GAS]
 gi|71910925|ref|YP_282475.1| DNA polymerase III subunits gamma/tau [Streptococcus pyogenes
           MGAS5005]
 gi|9789547|gb|AAF98348.1| DNA polymerase III gamma/tau subunits [Streptococcus pyogenes]
 gi|13622473|gb|AAK34191.1| DNA polymerase III subunits gamma / tau [Streptococcus pyogenes M1
           GAS]
 gi|71853707|gb|AAZ51730.1| DNA polymerase III subunit gamma/tau [Streptococcus pyogenes
           MGAS5005]
          Length = 556

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 47/242 (19%), Positives = 85/242 (35%), Gaps = 21/242 (8%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     R +T +E  GQ    + LK  +E+ K         LF GP G GKT+ A++ A+
Sbjct: 4   ALYRKYRSQTFDEMVGQSVISTTLKQAVESGKISHAY----LFSGPRGTGKTSAAKIFAK 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +    +    P      D+   +TN    DV+ ID      +  +  I ++  Y     
Sbjct: 60  AMNCPNQVDGEPCNQC--DICRDITNGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSRA 117

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT +  +   +  R         
Sbjct: 118 TYKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQ-RFEFKA 176

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            + + ++  +       G+A   +A   IA R+ G  R A  +L +    +         
Sbjct: 177 IKQKAIREHLAWVLDKEGIAYEVDALNLIARRAEGGMRDALSILDQALSLSPDNQVAIAI 236

Query: 243 RE 244
            E
Sbjct: 237 AE 238


>gi|268567908|ref|XP_002647902.1| Hypothetical protein CBG23770 [Caenorhabditis briggsae]
 gi|187040787|emb|CAP20535.1| hypothetical protein CBG_23770 [Caenorhabditis briggsae AF16]
          Length = 299

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/142 (23%), Positives = 50/142 (35%), Gaps = 28/142 (19%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L S  V      +   RP  L E     +    L  FIE        L H+LF GPPG G
Sbjct: 162 LPSTTVVSNLPWVEKYRPSKLNELVAHEQVVKTLTKFIE-----NRTLPHLLFYGPPGTG 216

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAAL------------------LTNLEDRD- 107
           KTT     AR++    + +S  +   A D   +                    +  D+D 
Sbjct: 217 KTTTVLAAARKMYHPSKMSSMVLELNASDERGIDVVRNTIVNFAQTKGLQAFASASDKDS 276

Query: 108 ----VLFIDEIHRLSIIVEEIL 125
               ++ +DE   ++   +  L
Sbjct: 277 VPFKLVILDEADAMTKDAQNAL 298


>gi|281201770|gb|EFA75978.1| Cell division control protein [Polysphondylium pallidum PN500]
          Length = 788

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 71/198 (35%), Gaps = 23/198 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
           T ++  G  +    L++ IE      +            +L  GPPG  KTTL + +A  
Sbjct: 540 TWDDIGGLEDVKQELQLAIEWPMLHGDTYKRLGLSPPKGILLYGPPGCSKTTLVKAIANS 599

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRL-SIIVEEILYPA 128
             ++F S SG  +           + A+          +LF DEI  + S         +
Sbjct: 600 AKLSFISMSGANVFSPFLGDSEATIRAVFKTARQSTPSILFFDEIDAIVSKRQSSESGDS 659

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
            +   L   + E          L    ++ AT R+ ++ + L    RF   ++++  + +
Sbjct: 660 AQSRVLSTFLNEMDGFE----QLKGVIVVGATNRLDMIDSALLRPGRFDKILKISLPDQQ 715

Query: 187 DLKTIVQRGAKLTGLAVT 204
               I++   K   L   
Sbjct: 716 TRLKIIKVKTKNLPLESD 733



 Score = 42.8 bits (99), Expect = 0.076,   Method: Composition-based stats.
 Identities = 41/216 (18%), Positives = 70/216 (32%), Gaps = 23/216 (10%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL------E 104
               +L  G PG GKT + + +A    ++        I+    GD  A L  +      +
Sbjct: 311 PPKGILLKGEPGTGKTHIVRSIATYYAIDLICVDATKISGTYLGDTEAALRRIFGDATKQ 370

Query: 105 DRD---VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATT 161
            RD   +LFIDEI  +     +      E   +  ++       S   NL    +IAAT 
Sbjct: 371 SRDKPAILFIDEIDTICPPRAQA--NNNESRVVGQLLTLMDGIESRSNNL---IVIAATN 425

Query: 162 RVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTP 219
           R   +   L+   RF   + +   +      I++                   +    T 
Sbjct: 426 RPNHIDPALRRPGRFDRELEIPVPDRHQRLQILK-----LYTKHLPINVDLSVLSDECTG 480

Query: 220 RIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255
            +   L    RD A +A  K  +    +  +     
Sbjct: 481 YVGANLQSVCRDAAFIAFKKYESGMKQEKTIDHQDF 516


>gi|224087194|ref|XP_002189153.1| PREDICTED: similar to lon peptidase 1, mitochondrial [Taeniopygia
           guttata]
          Length = 921

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 73/192 (38%), Gaps = 33/192 (17%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI  ++ R      +L F GPPG+GKT++A+ +AR L   +   S
Sbjct: 458 EDHYGMDDVKKRILEFIAVSQLRGSTQGKILCFYGPPGVGKTSIARSIARALNREYFRFS 517

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ ++    +        
Sbjct: 518 VGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLILIDEVDKIGRGYQGDPSSALL 577

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V ++LS+   I        +  PL+DR  + I ++ 
Sbjct: 578 ELLDPEQNSNFLD-------HYLDVPVDLSKVLFICTANVTETIPEPLRDRMEV-INVSG 629

Query: 183 YEIEDLKTIVQR 194
           Y  E+   I +R
Sbjct: 630 YVAEEKLAIAER 641


>gi|327473978|gb|EGF19391.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
           SK408]
          Length = 556

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/270 (17%), Positives = 81/270 (30%), Gaps = 53/270 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     R +T  +  GQ    + L+  +E  K         LF GP G GKT++A++ A+
Sbjct: 4   ALYRKYRSQTFGQLVGQQVVATTLRQAVEQGKISHAY----LFSGPRGTGKTSVAKIFAK 59

Query: 77  ELGVNFR------------------------STSGPVIAKAGDLAALLTN------LEDR 106
            +    +                                   ++  +         L   
Sbjct: 60  AMNCPNQKDGEPCNDCYICQAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLAKH 119

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
            V  IDE+H LS      L   +E+                         I ATT +  +
Sbjct: 120 KVYIIDEVHMLSTGAFNALLKTLEEPT------------------ENVVFILATTELHKI 161

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
              +  R       +    + +  I +   +  G+    E    IA R+ G  R A  +L
Sbjct: 162 PATILSRVQRFEFKSIKTQDIIGHI-EWILEQEGIDFEQEGVQIIARRAEGGMRDALSIL 220

Query: 227 RRVRDFAEVAHAKTITREIADAALLRLAID 256
            +     +     T   E    ++   A+D
Sbjct: 221 DQALSLTQENLLTTDIAEEITGSISLGALD 250


>gi|325696611|gb|EGD38500.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
           SK160]
 gi|332366531|gb|EGJ44277.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
           SK1059]
          Length = 556

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/270 (17%), Positives = 81/270 (30%), Gaps = 53/270 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     R +T  +  GQ    + L+  +E  K         LF GP G GKT++A++ A+
Sbjct: 4   ALYRKYRSQTFGQLVGQQVVATTLRQAVEQGKISHAY----LFSGPRGTGKTSVAKIFAK 59

Query: 77  ELGVNFR------------------------STSGPVIAKAGDLAALLTN------LEDR 106
            +    +                                   ++  +         L   
Sbjct: 60  AMNCPNQKDGEPCNDCYICQAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLAKH 119

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
            V  IDE+H LS      L   +E+                         I ATT +  +
Sbjct: 120 KVYIIDEVHMLSTGAFNALLKTLEEPT------------------ENVVFILATTELHKI 161

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
              +  R       +    + +  I +   +  G+    E    IA R+ G  R A  +L
Sbjct: 162 PATILSRVQRFEFKSIKTQDIIGHI-EWILEQEGIDFEQEGVQIIARRAEGGMRDALSIL 220

Query: 227 RRVRDFAEVAHAKTITREIADAALLRLAID 256
            +     +     T   E    ++   A+D
Sbjct: 221 DQALSLTQENLLTTDIAEEITGSISLGALD 250


>gi|312149056|gb|ADQ29127.1| cell division protein FtsH [Borrelia burgdorferi N40]
          Length = 639

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 59/270 (21%), Positives = 98/270 (36%), Gaps = 33/270 (12%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ E    L+  +E  K         A+    VL VG PG GKT LA+ VA E 
Sbjct: 170 TFKDVAGQEEVKQELREVVEFLKNPKKFEKIGAKIPKGVLLVGSPGTGKTLLAKAVAGEA 229

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV+F   SG       V   A  +  L  N       ++FIDE+  +       L    +
Sbjct: 230 GVSFFHMSGSDFVEMFVGVGASRVRDLFDNARKNSPCIIFIDELDAVGRSRGAGLGGGHD 289

Query: 131 DFQLDL------MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNF 182
           + +  L      M G G     +        ++AAT R  +L + L    RF   + ++ 
Sbjct: 290 EREQTLNQLLVEMDGFGTHTNVI--------VMAATNRPDVLDSALLRPGRFDRQVTVSL 341

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            +I++ + I+   +  T L+               +      L+      A   +   I 
Sbjct: 342 PDIKEREAILNIHSLKTKLSKDINLQVIARATPGASGADLANLINEGALIAARNNQDEIL 401

Query: 243 REIADAALLR--LAIDKMGFDQLDLRYLTM 270
            +  + A  +  + + K      D + L  
Sbjct: 402 MKDMEEARDKILMGVAKKSMTITDRQKLET 431


>gi|253681680|ref|ZP_04862477.1| ATP-dependent metallopeptidase HflB [Clostridium botulinum D str.
           1873]
 gi|253561392|gb|EES90844.1| ATP-dependent metallopeptidase HflB [Clostridium botulinum D str.
           1873]
          Length = 611

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 63/260 (24%), Positives = 109/260 (41%), Gaps = 26/260 (10%)

Query: 25  RTLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +T ++  GQ EA  +L   +       +  +  A+     L VGPPG GKT LA+ VA E
Sbjct: 160 KTFDDVAGQDEAKESLIEIVDFLHNPDKYVEIGAKLPKGALLVGPPGTGKTLLAKAVAGE 219

Query: 78  LGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
             V F S SG       V   A  +  L    E++   ++FIDEI  +    +  +    
Sbjct: 220 AKVPFFSLSGSSFVEMFVGMGAARVRDLFKQAEEKAPCIVFIDEIDAIGKSRDGAIGGGN 279

Query: 130 EDFQLDLMVGEGPSARSVKINLSR-FTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           ++ +  L       A     + S+   ++AAT R  +L   L    RF   + ++  +++
Sbjct: 280 DEREQTL---NQLLAEMDGFDASKGVVILAATNRPEVLDKALLRPGRFDRRVIVDTPDLK 336

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             ++I++  AK   ++  D    EIA   + TP   G  L  + + A +   K   + + 
Sbjct: 337 GRESILKVHAKEVKMS-EDVNLDEIA---KSTPGAVGADLANMVNEAALLAVKKGRKSVI 392

Query: 247 DAALLR-LAIDKMGFDQLDL 265
              L   + I   G ++ D 
Sbjct: 393 QQDLEEAVEIIIAGKEKKDR 412


>gi|146161442|ref|XP_001007155.2| hypothetical protein TTHERM_00213600 [Tetrahymena thermophila]
 gi|146146775|gb|EAR86910.2| hypothetical protein TTHERM_00213600 [Tetrahymena thermophila
           SB210]
          Length = 345

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 64/184 (34%), Gaps = 24/184 (13%)

Query: 2   MDREGLLSRNVSQED---ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVL 58
           M+ E  ++    Q+      +   RP  L+         + +K FIE  K     L ++L
Sbjct: 1   MEEEIPITVETKQKQQNIPWVEKYRPENLDNVISHEYIVATIKKFIEEDKK----LPNLL 56

Query: 59  FVGPPGLGKTTLAQVVARE-LGVNFRS----TSGPVIAKAGDLAALLTNL---------- 103
           F GPPG GKT+L   +A++  G N++      +         +   +             
Sbjct: 57  FYGPPGTGKTSLIVALAKQLYGKNYKQLVLELNASDDRGIDVVREQIKTFASTANFGMVG 116

Query: 104 EDRDVLFIDEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATT 161
           +   ++ +DE   ++   +  L   +E +       +     ++ +    SR T      
Sbjct: 117 KGTKLIILDEADSMTNQAQFALRRIIEKYSSNARFCMICNYVSKIIPALQSRCTRFKFKH 176

Query: 162 RVGL 165
               
Sbjct: 177 IPYQ 180


>gi|227496710|ref|ZP_03926985.1| conserved hypothetical protein [Actinomyces urogenitalis DSM 15434]
 gi|226833807|gb|EEH66190.1| conserved hypothetical protein [Actinomyces urogenitalis DSM 15434]
          Length = 375

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/173 (23%), Positives = 63/173 (36%), Gaps = 22/173 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T ++  GQ    + L   + A +         LF GP G GKTT A+++AR
Sbjct: 4   ALYRRYRPDTFQDVIGQEHVTAPLMAALRADRVTHAY----LFSGPRGCGKTTSARILAR 59

Query: 77  ELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PA 128
            L      T  P  +     DLA         DV+ ID      +     L       PA
Sbjct: 60  CLNCEQFPTDTPCGICPSCRDLA--TGGPGSLDVVEIDAASHNGVDDARDLRERASFAPA 117

Query: 129 MEDFQLDLMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
            + F++ ++         G     + V+   +    I ATT    +   ++ R
Sbjct: 118 RDRFKIFILDEAHMVTPQGFNALLKLVEEPPAHVKFIFATTEPEKVIGTIRSR 170


>gi|55378303|ref|YP_136153.1| cell division control protein 48 [Haloarcula marismortui ATCC
           43049]
 gi|55231028|gb|AAV46447.1| cell division control protein 48 [Haloarcula marismortui ATCC
           43049]
          Length = 741

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 54/238 (22%), Positives = 92/238 (38%), Gaps = 19/238 (7%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDR---- 106
               VL  GPPG GKT +A+ VA E   NF S  GP  +    G+    +     +    
Sbjct: 495 PPSGVLLYGPPGTGKTLMAKAVANETDANFISVRGPQLLSKWVGESEKAIRQTFRKARQV 554

Query: 107 --DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164
              ++F DE+  L+      +   + +  ++ ++ E      ++       +I AT R  
Sbjct: 555 APTIIFFDELDSLAPGRGGEMGSNVSERVVNQLLTELDGLEEME----DVMVIGATNRPD 610

Query: 165 LLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
           ++   L    RF   + +   +IE  + I++     T L+  D +  E+A  S G   + 
Sbjct: 611 MIDPALIRSGRFDRLVMIGEPDIEGREQILKIHTDDTPLS-PDVSLRELAEVSDGF--VG 667

Query: 223 GRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLD--LRYLTMIARNFGGG 278
             L    R+ A  A  +    E  +    R A+D +     D    Y   +   F GG
Sbjct: 668 SDLESIAREAAIEALREDDNAEEVEMRHFRQAMDSVRPTITDDIREYYEQMEEEFRGG 725



 Score = 52.0 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 50/199 (25%), Positives = 73/199 (36%), Gaps = 23/199 (11%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLT 101
           K   E    VL  GPPG GKT LA+ VA E   +F S +GP I           L  +  
Sbjct: 217 KLGIEPPQGVLLHGPPGTGKTLLAKAVANETSASFFSIAGPEIISKYYGESEQQLREIFE 276

Query: 102 NLEDR--DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA 159
           +  +    ++FIDE+  ++   E++           L+            +  +  +IAA
Sbjct: 277 DASEESPSIIFIDELDSIAPKREDVTGEVERRVVAQLLTM-----MDGLESRGQVIVIAA 331

Query: 160 TTRVGLLTNPLQ-----DRFGIPIRLNFYEIEDLKTIVQRGAKL-----TGLAVTDEAAC 209
           T RV  +   L+     DR       +    E++  I  RG  L          TD    
Sbjct: 332 TNRVDSVDPALRRPGRFDREIEIGVPDEVGREEILQIHTRGMPLSDDVNLAKLATDTHGF 391

Query: 210 EIAMRSRGTPRIAGRLLRR 228
             A     T   A + LRR
Sbjct: 392 VGADIESLTKEAAMKALRR 410


>gi|134114111|ref|XP_774303.1| hypothetical protein CNBG2840 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50256938|gb|EAL19656.1| hypothetical protein CNBG2840 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 803

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 48/200 (24%), Positives = 74/200 (37%), Gaps = 35/200 (17%)

Query: 20  SLLR------PR-TLEEFTGQVEACSNLKVFIE--------AAKARAEALDHVLFVGPPG 64
           S +R      P     +  GQ +    L+  IE          +   EA   VL  GPPG
Sbjct: 526 SAMREVFIETPTVRWSDIGGQQDVKQKLRECIEWPLMHRDTFKRLGVEAPRGVLLYGPPG 585

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DVLFIDEIHR 116
             KT  A+ +A E G+NF +  GP +     G+    +  +  +       ++F DEI  
Sbjct: 586 CSKTMTAKALATESGINFIAVKGPELLNKYVGESERAVREIFRKARAASPSIIFFDEIDA 645

Query: 117 LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPL-----Q 171
           L     +          L  ++ E          LS  T++AAT R  +L + L      
Sbjct: 646 LGSARSD---DHAHSGVLTSLLNE----MDGVEELSGVTVVAATNRPDVLDSALMRPGRL 698

Query: 172 DRFGIPIRLNFYEIEDLKTI 191
           DR       +F   +D+  I
Sbjct: 699 DRILYVGAPDFETRKDIFRI 718



 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/200 (21%), Positives = 78/200 (39%), Gaps = 12/200 (6%)

Query: 47  AKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALL 100
            K        +L  GPPG GKT LA+ VA   G +    +GP ++ A        L  + 
Sbjct: 297 IKFGLNPPRGILLHGPPGTGKTALARAVASSAGCSCIVVNGPELSSAYHGETEERLRGVF 356

Query: 101 TNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIA 158
           T    R   ++ +DE+  L    +      +E   +  ++          +   R  ++A
Sbjct: 357 TEARKRSPCIVVLDEVDALCPRRDGGEGGEVERRVVATLLTLMDGMSHESLEGERVFVVA 416

Query: 159 ATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSR 216
           AT R   +   L+   RF   I +   +++  + I+         +++++    +A R+ 
Sbjct: 417 ATNRPNSIDPALRRPGRFDREIEVGVPDVKGRREILDIMLSKIPHSLSEKDLSSLAARTH 476

Query: 217 GTPRIAGRLLRRVRDFAEVA 236
           G   +   L   VR+ A  A
Sbjct: 477 G--YVGADLFSLVRESASAA 494


>gi|258513456|ref|YP_003189678.1| DNA polymerase III, subunits gamma and tau [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257777161|gb|ACV61055.1| DNA polymerase III, subunits gamma and tau [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 527

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/240 (18%), Positives = 73/240 (30%), Gaps = 53/240 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN- 81
           RP+   E  GQ      L    E A          LF GP G GKT+ A+++A+ L  + 
Sbjct: 11  RPQLFAEIMGQRHIVDTL----ENALKNNRIAHAYLFCGPRGTGKTSTAKILAKALNCHQ 66

Query: 82  --------------------------FRSTSGPVIAKAGDLAALLTNL---EDRDVLFID 112
                                       + S   I +  DL   +          V  +D
Sbjct: 67  IKGVEPCNKCSSCVSVAQGSAIDVIEIDAASNRGIDEIRDLKERVKFAPTGGKYKVYIVD 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H L+I     L   +E+                         + ATT    L   +  
Sbjct: 127 EVHMLTIEAFNALLKTLEE------------------PPEHVIFVLATTEPHKLPLTILS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R            E + + ++   +   + ++  A   I   + G  R A  +L ++  F
Sbjct: 169 RCQ-RFDFKSIGAEPMTSRLKDILQDLQVKISPAALELIVQAAEGGLRDALSILDQIITF 227


>gi|321261137|ref|XP_003195288.1| peroxisome biosynthesis protein PAS1 (Peroxin-1) [Cryptococcus
           gattii WM276]
 gi|317461761|gb|ADV23501.1| Peroxisome biosynthesis protein PAS1 (Peroxin-1), putative
           [Cryptococcus gattii WM276]
          Length = 803

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 49/200 (24%), Positives = 75/200 (37%), Gaps = 35/200 (17%)

Query: 20  SLLR------PR-TLEEFTGQVEACSNLKVFIE--------AAKARAEALDHVLFVGPPG 64
           S +R      P     +  GQ +    LK  IE          +   EA   VL  GPPG
Sbjct: 526 SAMREVFVETPTVRWSDIGGQQDVKQKLKECIEWPLMHRDTFKRLGVEAPRGVLLYGPPG 585

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DVLFIDEIHR 116
             KT  A+ +A E G+NF +  GP +     G+    +  +  +       ++F DEI  
Sbjct: 586 CSKTMTAKALATESGINFIAVKGPELLNKYVGESERAVREIFRKARAASPSIIFFDEIDA 645

Query: 117 LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPL-----Q 171
           L     +       D  L  ++    +       LS  T++AAT R  +L + L      
Sbjct: 646 LGSARSD-------DHTLSGVLTSLLNEMDGVEELSGVTVVAATNRPDVLDSALMRPGRL 698

Query: 172 DRFGIPIRLNFYEIEDLKTI 191
           DR       +F   +D+  I
Sbjct: 699 DRILYVGAPDFETRKDIFRI 718



 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 76/190 (40%), Gaps = 12/190 (6%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLEDRD--V 108
           +L  GPPG GKT LA+ VA   G +    +GP ++ A        L  + T    R   +
Sbjct: 307 ILLHGPPGTGKTALARAVASSAGCSCIVVNGPELSSAYHGETEERLRGVFTEARKRSPCI 366

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           + +DE+  L    +      +E   +  ++          +   R  ++AAT R   +  
Sbjct: 367 VVLDEVDALCPRRDGGEGGEVERRVVATLLTLMDGMSHESLEGERVFVVAATNRPNSIDP 426

Query: 169 PLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
            L+   RF   I +   +++  + I+         ++++     +A R+ G   +   L 
Sbjct: 427 ALRRPGRFDREIEIGVPDVKGRREILDIMLSKIPHSLSEGDLSSLAARTHG--YVGADLF 484

Query: 227 RRVRDFAEVA 236
             VR+ A  A
Sbjct: 485 SLVRESASAA 494


>gi|284054153|ref|ZP_06384363.1| AAA ATPase, central region [Arthrospira platensis str. Paraca]
          Length = 622

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 57/227 (25%), Positives = 86/227 (37%), Gaps = 27/227 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVARE 77
           TL++  G  +    LK  I     R + L          VL VGPPG GKT  A+ +A E
Sbjct: 100 TLKDIGGLNQELKELKELIAIPLKRPDLLVKLGLEPTHGVLLVGPPGTGKTLTARALAEE 159

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
           LGVN+ +  GP +           L A+          ++FIDEI  L+         A+
Sbjct: 160 LGVNYIALVGPEVITKYYGEAEQKLRAIFEKAAKNAPCIIFIDEIDSLAPDR-----SAV 214

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
           E      +V +  S            L+ AT R   L   L+   RF   I+    +I  
Sbjct: 215 EGEVEKRLVAQLLSLMDGFSQNKGVILLGATNRPDHLDPALRRPGRFDREIQFRVPDING 274

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
            K I+Q    +    +  + + ++   +  T    G  L+ V   A 
Sbjct: 275 RKEILQ----VLTRTMPLDDSVDLEFIADRTVGFVGADLKAVCQKAA 317



 Score = 49.3 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 73/184 (39%), Gaps = 21/184 (11%)

Query: 28  EEFTGQVEACSNLKVFIEAA--------KARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           E+  G       L+  +E A        + +A A   +L  GPPG GKT LA+ VA +  
Sbjct: 368 EDIGGLETIKQTLRESVEGALLYPELYKETKARAPKGILLWGPPGTGKTLLAKAVASQAR 427

Query: 80  VNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMED 131
            NF   +GP      V A    +  L       D  V+FIDE+  L+           + 
Sbjct: 428 ANFIGINGPDLLSRWVGASEQAVRELFAKARQADPCVIFIDELDTLAPARGTY---TGDS 484

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
              + +VG+  +      + S   +I AT R   +   L    R  + ++++   ++   
Sbjct: 485 GVSNRVVGQLLTELDGLESGSNILVIGATNRPDAIDPALLRAGRLDLQLKVDLPNLDSRF 544

Query: 190 TIVQ 193
            I+Q
Sbjct: 545 KILQ 548


>gi|145589196|ref|YP_001155793.1| ATP-dependent metalloprotease FtsH [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|145047602|gb|ABP34229.1| membrane protease FtsH catalytic subunit [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 621

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 55/249 (22%), Positives = 94/249 (37%), Gaps = 23/249 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAK------ARAEALDH-VLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  EA   +   ++  K           + H VL VGPPG GKT LA+ +A E 
Sbjct: 148 TFADVAGCDEAKEEVFELVDFLKDPQKFQKLGGRIPHGVLLVGPPGTGKTLLAKAIAGEA 207

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  +  N +     ++FIDEI  +       +    +
Sbjct: 208 KVPFFSISGSDFVEMFVGVGASRVRDMFENAKKNSPCIIFIDEIDAVGRHRGAGMGGGND 267

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  M+ E     S     S   ++AAT R  +L   L    RF   + +   +I 
Sbjct: 268 EREQTLNQMLVEMDGFESN----SGVIVVAATNRSDVLDKALLRPGRFDRQVHVGLPDIR 323

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I+Q   +   +     AA         +      L+     FA   + +++  +  
Sbjct: 324 GREQILQVHMRKVPIDPDVNAAVLARGTPGFSGADLANLVNESALFAARRNKRSVDMKDF 383

Query: 247 DAALLRLAI 255
           + A  ++ +
Sbjct: 384 EDAKDKIYM 392


>gi|83816138|ref|YP_445932.1| cell division protein FtsH [Salinibacter ruber DSM 13855]
 gi|294507843|ref|YP_003571901.1| cell division protein [Salinibacter ruber M8]
 gi|310943098|sp|D5HA94|FTSH2_SALRM RecName: Full=ATP-dependent zinc metalloprotease FtsH 2
 gi|83757532|gb|ABC45645.1| cell division protein FtsH [Salinibacter ruber DSM 13855]
 gi|294344171|emb|CBH24949.1| cell division protein [Salinibacter ruber M8]
          Length = 683

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 54/267 (20%), Positives = 94/267 (35%), Gaps = 27/267 (10%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVARE 77
            T ++  G   A   L+  I+  K          +    VL VGPPG GKT LA+ VA E
Sbjct: 185 TTFDDVAGADSAKEELREIIKFLKNPKRFEGLGGKVPKGVLLVGPPGTGKTLLARAVAGE 244

Query: 78  LGVNFRSTSGPVIA------KAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
               F S SG           A  +  + +  ++    ++FIDE+  +       L    
Sbjct: 245 ANAPFFSVSGSDFMEMFVGVGASRVRDMFSEAKETSPAIIFIDELDSIGRKRGAGLGGGN 304

Query: 130 EDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           ++ +  L  ++ E       +       ++AAT R  +L + L    RF   I ++    
Sbjct: 305 DEREQTLNQLLSELDGFEENEG----VIVMAATNRPDILDSALTRPGRFDRQITVDLPTK 360

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           +    I++  A+   L+   +           +      LL      A       I    
Sbjct: 361 QSRHEILKIHAREKPLSDDVDLEEIARSTPGFSGADLENLLNEAALLAGRHGHDAIQYSD 420

Query: 246 ADAALLRLAI----DKMGFDQLDLRYL 268
            + A  ++ +    D M  D  + + L
Sbjct: 421 IEQARDKVMMGLKRDGMVLDDEEKKLL 447


>gi|58269466|ref|XP_571889.1| hypothetical protein CNG01950 [Cryptococcus neoformans var.
           neoformans JEC21]
 gi|57228125|gb|AAW44582.1| hypothetical protein CNG01950 [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 803

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 48/200 (24%), Positives = 74/200 (37%), Gaps = 35/200 (17%)

Query: 20  SLLR------PR-TLEEFTGQVEACSNLKVFIE--------AAKARAEALDHVLFVGPPG 64
           S +R      P     +  GQ +    L+  IE          +   EA   VL  GPPG
Sbjct: 526 SAMREVFIETPTVRWSDIGGQQDVKQKLRECIEWPLMHRDTFKRLGVEAPRGVLLYGPPG 585

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DVLFIDEIHR 116
             KT  A+ +A E G+NF +  GP +     G+    +  +  +       ++F DEI  
Sbjct: 586 CSKTMTAKALATESGINFIAVKGPELLNKYVGESERAVREIFRKARAASPSIIFFDEIDA 645

Query: 117 LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPL-----Q 171
           L     +          L  ++ E          LS  T++AAT R  +L + L      
Sbjct: 646 LGSARSD---DHAHSGVLTSLLNE----MDGVEELSGVTVVAATNRPDVLDSALMRPGRL 698

Query: 172 DRFGIPIRLNFYEIEDLKTI 191
           DR       +F   +D+  I
Sbjct: 699 DRILYVGAPDFETRKDIFRI 718



 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/200 (21%), Positives = 78/200 (39%), Gaps = 12/200 (6%)

Query: 47  AKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALL 100
            K        +L  GPPG GKT LA+ VA   G +    +GP ++ A        L  + 
Sbjct: 297 IKFGLNPPRGILLHGPPGTGKTALARAVASSAGCSCIVVNGPELSSAYHGETEERLRGVF 356

Query: 101 TNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIA 158
           T    R   ++ +DE+  L    +      +E   +  ++          +   R  ++A
Sbjct: 357 TEARKRSPCIVVLDEVDALCPRRDGGEGGEVERRVVATLLTLMDGMSHESLEGERVFVVA 416

Query: 159 ATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSR 216
           AT R   +   L+   RF   I +   +++  + I+         +++++    +A R+ 
Sbjct: 417 ATNRPNSIDPALRRPGRFDREIEVGVPDVKGRREILDIMLSKIPHSLSEKDLSSLAARTH 476

Query: 217 GTPRIAGRLLRRVRDFAEVA 236
           G   +   L   VR+ A  A
Sbjct: 477 G--YVGADLFSLVRESASAA 494


>gi|292487502|ref|YP_003530374.1| DNA polymerase III subunits tau/gamma [Erwinia amylovora CFBP1430]
 gi|292898743|ref|YP_003538112.1| DNA polymerase III subunit tau/gamma [Erwinia amylovora ATCC 49946]
 gi|291198591|emb|CBJ45699.1| DNA polymerase III subunit Tau (contains DNA polymerase III subunit
           Gamma) [Erwinia amylovora ATCC 49946]
 gi|291552921|emb|CBA19966.1| DNA polymerase III, tau and gamma subunits [Erwinia amylovora
           CFBP1430]
          Length = 643

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 55/306 (17%), Positives = 102/306 (33%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+   E  GQ    + L        +        LF G  G+GKTT+A+++A+  G+N 
Sbjct: 11  RPQAFTEVVGQQHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTTIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGQCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++        + ATT    L   +  R  +   L   + E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDQEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  +Q       ++    A   +A  + G+ R A  L     D A       +T    + 
Sbjct: 184 RGQLQHVLHAETISAESRALQLLARAADGSMRDALSL----TDQAIAMGQGQVTTATVND 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L       D+  L  +  +    G   + +   +A      +A+   +   + +  
Sbjct: 240 MLGMLD------DEQPLALIEALVHADGAQVMALVNQAATRGVEWEALLVEMLTLLHRVA 293

Query: 309 FIQRTP 314
            IQ  P
Sbjct: 294 MIQLLP 299


>gi|326563685|gb|EGE13937.1| DNA polymerase III gamma and tau subunit [Moraxella catarrhalis
           103P14B1]
 gi|326573294|gb|EGE23262.1| DNA polymerase III gamma and tau subunit [Moraxella catarrhalis
           101P30B1]
 gi|326575807|gb|EGE25730.1| DNA polymerase III gamma and tau subunit [Moraxella catarrhalis
           CO72]
          Length = 748

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 50/234 (21%), Positives = 80/234 (34%), Gaps = 23/234 (9%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQ 72
           Q        RP+   E  GQ      L   I+  +     L H  LF G  G+GKTT+A+
Sbjct: 4   QYQVLARKYRPKNFSELLGQSHVAQALSNAIDTGR-----LHHAYLFTGTRGVGKTTIAR 58

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL-----YP 127
           ++A+ L      TS P      D    +      D++ ID   R  +     L     YP
Sbjct: 59  ILAKCLNCETGMTSQP--CGVCDTCISIDQGRFLDLIEIDAASRTKVEDTRELLENVPYP 116

Query: 128 AMEDFQLDLMVGEGPS--ARSVKINLS-------RFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++      ++ E       S    L            + ATT    L   +  R  +  
Sbjct: 117 PVQGRYKVYLIDEVHMLSTHSFNALLKTLEEPPDYVKFVFATTDPQKLPITIISRC-LQF 175

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
            L       L   + +      +  T+ A  ++A  ++G+ R A  L  +   F
Sbjct: 176 VLRPLPQACLFDHLAKVLDAEKIPFTENALWQLASTAKGSVRDALSLTDQAIAF 229


>gi|319405116|emb|CBI78722.1| DNA polymerase III subunit tau [Bartonella sp. AR 15-3]
          Length = 633

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 48/276 (17%), Positives = 84/276 (30%), Gaps = 57/276 (20%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M++    +   +         RP++  +  GQ      L    +  +         +  G
Sbjct: 1   MEQLIKSTPETTVYRVLARKYRPKSFSDLIGQEAMVCTLNNAFKTGRIAQAW----MLTG 56

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVI----------------------------AKA 93
             G+GKTT A+++AR L    +    P                                 
Sbjct: 57  IRGVGKTTTARILARALNYKTKDIDQPTTLFDTLGEHCTQIIEGRHIDVIEMDAASHTGI 116

Query: 94  GDLAALLTNLEDRDVL------FIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSV 147
            D+  ++  +  R V        IDE+H LS      L   +E+                
Sbjct: 117 DDIREIIEQIRYRPVAARYKVYIIDEVHMLSTQAFNGLLKTLEE---------------- 160

Query: 148 KINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEA 207
                    I ATT +  +   +  R      L   E   L T +++ A+L  +   D+A
Sbjct: 161 --PPPHVKFIFATTEIRKVPITILSRCQ-RFNLRRIEATVLLTHLRQIAQLEKVEAQDQA 217

Query: 208 ACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
              IA  + G+ R A  +L +   +          R
Sbjct: 218 LFMIAHAAEGSVRDALSILDQAIAYGNGKVDAIAVR 253


>gi|167581686|ref|ZP_02374560.1| DNA polymerase III subunits gamma and tau [Burkholderia
           thailandensis TXDOH]
          Length = 384

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 85/229 (37%), Gaps = 27/229 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+      GQ      L   ++  +     L H  LF G  G+GKTTL+++ A+ L   
Sbjct: 11  RPKDFASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAMEDFQL 134
              TS P     G   A     E R V +++        +  ++ ++E  +Y  ++    
Sbjct: 66  TGVTSQP----CGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             M+ E             ++++        I ATT    +   +  R  +   L     
Sbjct: 122 VYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPA 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
             + + ++R      +A   +A   +A  ++G+ R A  L  +   ++ 
Sbjct: 181 GHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSA 229


>gi|30350173|gb|AAP31481.1| putative DNA polymerase III [Western X phytoplasma]
          Length = 579

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 81/225 (36%), Gaps = 23/225 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+  +   GQ      LK  I+  K     + H  L  G  G+GKTTLA+++A+ +   
Sbjct: 11  RPKNFDGMVGQEVVIKTLKNAIKLQK-----IHHCYLLSGNKGVGKTTLAKILAKAINCQ 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL-----YPAMEDFQLDL 136
                G       +   ++    + DV+ ID      +     L     Y          
Sbjct: 66  N--PQGQDCCNECEFCLVVHQKANLDVIEIDGASYNGVDEIRELKDTVQYKPHLLKYKVY 123

Query: 137 MVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ++ E             + ++        I  T+ +  +   +  R      L     E+
Sbjct: 124 IIDEVHVLSSNAFNALLKLLEEPPLNVVFILITSELAKIPKTILSRTQ-HFHLPNLTDEE 182

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           +KT +    +   + +TDEA   IA  S G+ R A  LL ++  +
Sbjct: 183 IKTKLNPIVEEEKILITDEALTTIAAYSDGSMRDALNLLDKISSY 227


>gi|19112584|ref|NP_595792.1| AAA family ATPase Rix7 (predicted) [Schizosaccharomyces pombe
           972h-]
 gi|74582013|sp|O14325|YB7A_SCHPO RecName: Full=Uncharacterized AAA domain-containing protein
           C16E9.10c
 gi|2467272|emb|CAB16902.1| AAA family ATPase Rix7 (predicted) [Schizosaccharomyces pombe]
          Length = 779

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 56/237 (23%), Positives = 86/237 (36%), Gaps = 23/237 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
           +L +  G  +  + L   +       E            VL  GPPG GKT LA  +A E
Sbjct: 172 SLSDIGGLDDCINELLELVAMPIKHPEVYQYTGIHPPRGVLLHGPPGCGKTMLANALANE 231

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
           LGV F S S P I           +  +    +     ++FIDEI  ++    E     M
Sbjct: 232 LGVPFISISAPSIVSGMSGESEKKVREVFEEAKSLAPCLMFIDEIDAVTPKR-ESAQREM 290

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
           E   +   +         K +     +I AT R   L + L+   RF   I L     + 
Sbjct: 291 ERRIVAQFLTCMDELSFEKTDGKPVLVIGATNRPDSLDSALRRAGRFDREICLTVPSQDA 350

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            + I++  AK   L+       +    ++ TP   G  L+ +   A +   K I  E
Sbjct: 351 REKILRTMAKGLKLSGD----FDFRQLAKQTPGYVGADLKALTAAAGIIAIKRIFNE 403



 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 29/94 (30%), Positives = 38/94 (40%), Gaps = 8/94 (8%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--------AKAGDLAALLTNLE 104
           A   VL  GPPG GKT LA+ VA E   NF S  GP +         +A     L     
Sbjct: 525 APTGVLLWGPPGCGKTLLAKAVANESKANFISIRGPELLNKYVGESERAVRQVFLRARAS 584

Query: 105 DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138
              V+F DE+  +    ++ L  A       L+ 
Sbjct: 585 SPCVIFFDELDAMVPRRDDSLSEASSRVVNTLLT 618


>gi|222054983|ref|YP_002537345.1| ATP-dependent metalloprotease FtsH [Geobacter sp. FRC-32]
 gi|221564272|gb|ACM20244.1| ATP-dependent metalloprotease FtsH [Geobacter sp. FRC-32]
          Length = 616

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 57/250 (22%), Positives = 95/250 (38%), Gaps = 31/250 (12%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T E+  G   +   LK  ++  K          +    +L VGPPG GKT LA+ VA E 
Sbjct: 172 TFEDVAGMENSKQELKEMVDYLKNPKRFQDIGGKVPKGILLVGPPGTGKTLLARAVAGEA 231

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAME 130
           GV F S S        V   A  +  L +N +     ++FIDE+  +            +
Sbjct: 232 GVAFFSISASQFIEMFVGVGASRVRDLFSNAKKAAPSIVFIDELDAVGRSRGAGFGGGHD 291

Query: 131 DFQLDL------MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNF 182
           + +  L      M G  P    + I        AAT R  +L   L    RF   + ++ 
Sbjct: 292 EREQTLNQLLSEMDGFDPHEEVIVI--------AATNRPDVLDPALLRPGRFDRHVVIDR 343

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            ++ D + I++  A+   L    + +         T      L+      A   ++KT++
Sbjct: 344 PDLRDREQILKVHARKIRLDPQVDLSIIARGTPGMTGADLENLINEAAIQAARQNSKTVS 403

Query: 243 REIADAALLR 252
            +  + AL +
Sbjct: 404 MDDLERALDK 413


>gi|209736064|gb|ACI68901.1| Replication factor C subunit 2 [Salmo salar]
          Length = 153

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 42/121 (34%), Gaps = 12/121 (9%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   +   RP  L E  G  E  S L+VF     AR   + +++  GPPG GKTT    +
Sbjct: 34  ELPWVEKYRPLKLNEIVGNEETVSRLEVF-----AREGNVPNIIIAGPPGTGKTTSILCL 88

Query: 75  AR-----ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           AR      +       +         +   +     + V      H  +   +  L P +
Sbjct: 89  ARALLGPAMKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRH--NPSSQHCLLPPV 146

Query: 130 E 130
            
Sbjct: 147 S 147


>gi|168184981|ref|ZP_02619645.1| DNA polymerase III, gamma and tau subunit [Clostridium botulinum
           Bf]
 gi|237793342|ref|YP_002860894.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum
           Ba4 str. 657]
 gi|182671955|gb|EDT83916.1| DNA polymerase III, gamma and tau subunit [Clostridium botulinum
           Bf]
 gi|229262232|gb|ACQ53265.1| DNA polymerase III, subunits gamma and tau [Clostridium botulinum
           Ba4 str. 657]
          Length = 541

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 83/225 (36%), Gaps = 29/225 (12%)

Query: 23  RPRTLEEFTGQVEACSNLK-VFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           RPRT +E  GQ      LK   IE   A A      LF G  G GKT+ A+++++ +   
Sbjct: 11  RPRTFKEVVGQKHITVTLKNQVIEKRIAHA-----YLFCGTRGTGKTSTAKILSKAVNC- 64

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI--------IVEEILYPAMEDFQ 133
                 P   +  +   +   +    ++ + E+   S         ++E + YP  E   
Sbjct: 65  ----LNPKDGEPCNECEICNKINSGTLMDVIEMDAASKRKLEDIKEVIENVKYPPQEGKN 120

Query: 134 LDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
              ++ E             ++++   S    I ATT    L   +  R          +
Sbjct: 121 KVYIMDEVHMLTQEAVNAFLKTLEEPPSNVIFILATTDPQKLPITILSRCQ-RFDFRRIK 179

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
            E++   ++      G+   D++   IA  S G  R A  +L +V
Sbjct: 180 NEEIFERLRAIVSEQGIYADDKSLNLIARMSDGAMRDALSILDQV 224


>gi|156084582|ref|XP_001609774.1| replication factor C3 protein [Babesia bovis T2Bo]
 gi|154797026|gb|EDO06206.1| replication factor C3 protein, putative [Babesia bovis]
          Length = 348

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/234 (18%), Positives = 74/234 (31%), Gaps = 12/234 (5%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP +  +     +  S L  F E  +     L H+LF GPPG GKT+    V+R
Sbjct: 8   PWVEKYRPESFSDIISHDDILSTLMNFAEKGQ-----LPHLLFHGPPGTGKTSTIMAVSR 62

Query: 77  -----ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEI-HRLSIIVEEILYPAME 130
                         +         +   +    +    F   I    S     +    ++
Sbjct: 63  YLYGSHRHSYVMELNASDERGIETVREQIKTFAETSNTFSSGIVGSDSGPRTNLKLIILD 122

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           +        +    R ++I  S          +  +  P+Q R     R    + + +K 
Sbjct: 123 EADQMTNAAQNSLRRIMEIYSSNVRFCLICNFMNRIIPPIQSRC-TGFRFPPLKNDVVKR 181

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
                AK  GL V++ A   +A   +G  R     L+           K IT +
Sbjct: 182 RTADIAKAEGLTVSECALDTLAEIGQGDMRRVLNCLQVTAMSIGATRDKVITSD 235


>gi|23465090|ref|NP_695693.1| DNA polymerase III subunits gamma and tau [Bifidobacterium longum
           NCC2705]
 gi|23325703|gb|AAN24329.1| DNA polymerase III subunit gamma/tau [Bifidobacterium longum
           NCC2705]
          Length = 970

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 59/282 (20%), Positives = 93/282 (32%), Gaps = 28/282 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     RP T E   GQ +    L   ++  K     L H  LF GP G GKT+ A+++A
Sbjct: 4   ALYRRYRPDTFEGVIGQDQVTVPLMRALDEGK-----LTHAYLFSGPRGCGKTSSARILA 58

Query: 76  RELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------P 127
           R +      TS P        DLA         DV+ ID      +     L       P
Sbjct: 59  RCVNCAKGPTSHPCGECESCKDLA--TGGPGSIDVVEIDAASHNGVDDARELRERAGFAP 116

Query: 128 AMEDFQLDLMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR---FGI 176
           A + +++ ++         G     + V+        I ATT    +   ++ R   +  
Sbjct: 117 ARDRYKIFILDEAHMVTQQGFNALLKIVEEPPEHVMFIFATTEPDKVIGTIRSRTHHYPF 176

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
            +         L+TI  +        V   A        R T  +  +L+    +     
Sbjct: 177 RLVPQEVMGPYLETICDKEGIKPEPGVLKLAMRAGGGSMRDTLSVLDQLMVGSVEGVITH 236

Query: 237 HAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
            A          AL+  A+D +  D        +I +   GG
Sbjct: 237 DAAVALLGFTPEALIGEAVDAV-IDHNGEALYGVIQKVVVGG 277


>gi|326673238|ref|XP_002663242.2| PREDICTED: spermatogenesis-associated protein 5-like, partial
           [Danio rerio]
          Length = 590

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 49/206 (23%), Positives = 77/206 (37%), Gaps = 29/206 (14%)

Query: 32  GQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARELGVNFR 83
           GQ+E     +  IE      E            VL  GPPG GKT + + VA E+G +  
Sbjct: 242 GQLEVI---RETIELPLKHPELFKSYGIPPPRGVLLYGPPGTGKTLIGRAVANEVGAHMS 298

Query: 84  STSGPVIAKA------GDLAALLTNLEDR--DVLFIDEIHRLSIIV---EEILYPAMEDF 132
             +GP I           L  + T    R   ++FIDE+  L       +  +   +   
Sbjct: 299 VINGPEIMSKFYGETEARLRQIFTEAAQRQPSIIFIDELDALCPKREGAQNEVEKRVVAT 358

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKT 190
            L LM G G    S ++ +     + AT R   L   L+   RF   + +    ++  + 
Sbjct: 359 LLTLMDGIGSEGHSGQLLV-----LGATNRPHALDPALRRPGRFDKELEIGVPNVDGRRD 413

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSR 216
           I+Q   +      T E   E+A  + 
Sbjct: 414 ILQTLLRSVPCDATHEELQELADAAH 439



 Score = 41.2 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 10/69 (14%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID 112
               VL  GPPG  KT +A+ +A E  +NF   S  V  KA  +A          ++F D
Sbjct: 531 PPKGVLLYGPPGCSKTMIAKALANESQLNF--LSIKVFRKARTVAP--------SIVFFD 580

Query: 113 EIHRLSIIV 121
           EI  L++  
Sbjct: 581 EIDALAVAR 589


>gi|317505297|ref|ZP_07963226.1| ATP-dependent metalloprotease FtsH [Prevotella salivae DSM 15606]
 gi|315663600|gb|EFV03338.1| ATP-dependent metalloprotease FtsH [Prevotella salivae DSM 15606]
          Length = 683

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 53/249 (21%), Positives = 95/249 (38%), Gaps = 28/249 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ  A   ++  +E  K          +     L VGPPG GKT LA+ VA E 
Sbjct: 201 TFKDVAGQEGAKQEVQEIVEFLKNPQKYTELGGKIPKGALLVGPPGTGKTLLAKAVAGEA 260

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM- 129
           GV F S SG       V   A  +  +    +++   ++FIDEI  +     +   P+M 
Sbjct: 261 GVPFFSMSGSDFVEMFVGVGASRVRDVFAQAKEKSPCIIFIDEIDAVGRARSKN--PSMG 318

Query: 130 ----EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183
                +  L+ ++ E     +     S   ++AAT R  +L   L    RF   I ++  
Sbjct: 319 GNDERENTLNALLTEMDGFGTN----SGVIVLAATNRADMLDKALLRAGRFDRQINVDLP 374

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           ++ +   I +   +   +    +           +      +       A   ++KT+ +
Sbjct: 375 DLAERIAIFKVHLRPLKVDKDLDIDFLARQTPGFSGADIANVCNEAALIAARHNSKTVCK 434

Query: 244 EIADAALLR 252
           +    A+ R
Sbjct: 435 QDFLDAVDR 443


>gi|304392342|ref|ZP_07374283.1| DNA polymerase III subunit tau [Ahrensia sp. R2A130]
 gi|303295446|gb|EFL89805.1| DNA polymerase III subunit tau [Ahrensia sp. R2A130]
          Length = 672

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 54/272 (19%), Positives = 86/272 (31%), Gaps = 57/272 (20%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           S+        RP +  +  GQ      L+      +         +  G  G+GKTT A+
Sbjct: 26  SEYRVLARKYRPSSFADLIGQEPMVRTLRNAFSTGRIAQAY----MLTGVRGVGKTTTAR 81

Query: 73  VVARELGVNFRSTSGPVIA----------------------------KAGDLAALLTNLE 104
           ++AR L     +   P +                               GD+  ++  + 
Sbjct: 82  ILARALNYESDTQKQPTLDLSTPGIHCADIMEGNHVDVIEMDAASHTGIGDIREIIAAVR 141

Query: 105 DRDVL------FIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIA 158
            + V        IDE+H LS      L   +E+                         I 
Sbjct: 142 YKPVSARYKVYIIDEVHMLSTAAFNGLLKTLEE------------------PPEHVKFIF 183

Query: 159 ATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGT 218
           ATT +  +   +  R      L   E  ++   + + AKL  +AV DEA   IA  S G+
Sbjct: 184 ATTEIRKVPITILSRCQ-RFDLRRIEAGEMVDHLGKIAKLESIAVEDEALAMIARASEGS 242

Query: 219 PRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
            R A  +L +    A      T+  E     L
Sbjct: 243 VRDALSVLDQAIAHASAESDATVRAEGVRDML 274


>gi|210633172|ref|ZP_03297708.1| hypothetical protein COLSTE_01621 [Collinsella stercoris DSM 13279]
 gi|210159212|gb|EEA90183.1| hypothetical protein COLSTE_01621 [Collinsella stercoris DSM 13279]
          Length = 635

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 59/229 (25%), Positives = 89/229 (38%), Gaps = 28/229 (12%)

Query: 26  TLEEFTGQVEACSNLKV---FIEAAKARAEA----LDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ EA  +LK    F+E  K   E         L VGPPG GKT LA+ VA E 
Sbjct: 183 TFKDVAGQEEAKESLKEVVDFLEKPKRYEEIGAKLPRGALLVGPPGTGKTLLAKAVAGEA 242

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG           A  +  L    +++   ++FIDEI  +    +   +   +
Sbjct: 243 GVPFFSISGSEFVEMFVGRGAAKVRDLFKQAKEKAPCIVFIDEIDTIGKKRDGGGFSGND 302

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E     + K       ++AAT R   L   L    RF   + +   ++ 
Sbjct: 303 EREQTLNQLLTEMDGFDNQKG----IVVLAATNRPDSLDAALLRPGRFDRRVPVELPDLA 358

Query: 187 DLKTIVQ-RGAKLTGLAVTDEAACEIAMRSRGTPRIAG----RLLRRVR 230
             K I++     +      D  A   A        +A       LR VR
Sbjct: 359 GRKAILELHSKDVKTEPGIDLTAIARATPGASGADLANIINEGALRAVR 407


>gi|19848237|emb|CAD19832.1| spermatogenesis associated factor [Takifugu rubripes]
          Length = 548

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/190 (23%), Positives = 71/190 (37%), Gaps = 21/190 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--V 108
           VL  GPPG GKT + + +A E+G +    +GP I           L  +      R   +
Sbjct: 365 VLLYGPPGTGKTMIGRAIANEVGAHMTVINGPEIMSKFYGETEARLRQIFAEASQRQPAI 424

Query: 109 LFIDEIHRLSIIV---EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
           +FIDE+  L       +  +   +    L LM G G    S ++ +     + AT R   
Sbjct: 425 VFIDELDALCPKREGAQNEVEKRVVASLLTLMDGIGSEGHSGQVLV-----LGATNRPHA 479

Query: 166 LTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAG 223
           L   L+   RF   + +      +   I+Q+  +L        +  E+   +  T    G
Sbjct: 480 LDPALRRPGRFDKELEVGVPSAAERADILQKQLRLAPCG---ASREELTQLADATHGYVG 536

Query: 224 RLLRRVRDFA 233
             L  V   A
Sbjct: 537 ADLAAVCKEA 546


>gi|302345773|ref|YP_003814126.1| ATP-dependent metallopeptidase HflB [Prevotella melaninogenica ATCC
           25845]
 gi|302149199|gb|ADK95461.1| ATP-dependent metallopeptidase HflB [Prevotella melaninogenica ATCC
           25845]
          Length = 676

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 66/263 (25%), Positives = 105/263 (39%), Gaps = 39/263 (14%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ  A   ++  +E  K          +     L VGPPG GKT LA+ VA E 
Sbjct: 190 TFKDVAGQTGAKQEVQEIVEFLKNPKKYTDLGGKIPKGALLVGPPGTGKTLLAKAVAGEA 249

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM- 129
           GV F S SG       V   A  +  +    +++   ++FIDEI  +     +   PAM 
Sbjct: 250 GVPFFSMSGSDFVEMFVGVGASRVRDVFHQAKEKSPCIIFIDEIDAVGRARSKN--PAMG 307

Query: 130 ----EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183
                +  L+ ++ E     +     S   ++AAT RV +L   L    RF   I ++  
Sbjct: 308 GNDERENTLNALLTEMDGFGTN----SGVIVLAATNRVDMLDKALLRAGRFDRQIHVDLP 363

Query: 184 EIEDLKTIV---QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           ++ + K I     R  KL      D  A       R TP  +G  +  V + A +  A+ 
Sbjct: 364 DLPERKEIFLVHMRNLKLEKNLDIDLLA-------RQTPGFSGADIANVCNEAALIAARH 416

Query: 241 ITREIADAA-LLRLAIDKMGFDQ 262
            + E+     L  +     G ++
Sbjct: 417 DSTEVTKQDFLDAVDRIIGGLEK 439


>gi|171186450|ref|YP_001795369.1| replication factor C large subunit [Thermoproteus neutrophilus
           V24Sta]
 gi|226739140|sp|B1YC69|RFCL_THENV RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|170935662|gb|ACB40923.1| AAA ATPase central domain protein [Thermoproteus neutrophilus
           V24Sta]
          Length = 422

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 61/275 (22%), Positives = 96/275 (34%), Gaps = 46/275 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEA------------AKARAEAL---DHVLFVG 61
             +   RP+   E   Q EA + L  +I A            AK R + +     VL  G
Sbjct: 4   PWVEKYRPKAFSEIVNQEEAKTLLASWICARFRAPKEFCARWAKKREKEVAEAKAVLLAG 63

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE---------DRDVLFID 112
           PPG+GKTT+   +ARE+       +   I   G+   L+             +  ++  D
Sbjct: 64  PPGIGKTTVVHALAREIRYELIELNASDIR-TGERIKLVVGRGLKESSLFGYEGKLVLFD 122

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+  L +  +E    A+ +      + E      V           A         PL+D
Sbjct: 123 EVDGLHVKEDEGGLEAIVE------IVETAKVPIVM---------TANNPYDPKFRPLRD 167

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
              + + L     E++  +++R     G    +EA   IA  S G  R A   L+     
Sbjct: 168 -ISLVVNLKRLSEEEVVEVLRRICTAEGAKCEEEALRSIAKSSLGDLRAAINDLQMYLS- 225

Query: 233 AEVAHAKTITREIADAALLRLAIDKMGFDQLDLRY 267
                 KT+T +       R     M F+ LD  Y
Sbjct: 226 ---GGRKTLTVDDIKRVGERNPQLSM-FEVLDRVY 256


>gi|326565235|gb|EGE15420.1| DNA polymerase III gamma and tau subunit [Moraxella catarrhalis
           12P80B1]
          Length = 748

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 50/234 (21%), Positives = 80/234 (34%), Gaps = 23/234 (9%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQ 72
           Q        RP+   E  GQ      L   I+  +     L H  LF G  G+GKTT+A+
Sbjct: 4   QYQVLARKYRPKNFSELLGQSHVAQALSNAIDTGR-----LHHAYLFTGTRGVGKTTIAR 58

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL-----YP 127
           ++A+ L      TS P      D    +      D++ ID   R  +     L     YP
Sbjct: 59  ILAKCLNCETGMTSQP--CGVCDTCISIDQGRFLDLIEIDAASRTKVEDTRELLENVPYP 116

Query: 128 AMEDFQLDLMVGEGPS--ARSVKINLS-------RFTLIAATTRVGLLTNPLQDRFGIPI 178
            ++      ++ E       S    L            + ATT    L   +  R  +  
Sbjct: 117 PVQGRYKVYLIDEVHMLSTHSFNALLKTLEEPPDYVKFVFATTDPQKLPITIISRC-LQF 175

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
            L       L   + +      +  T+ A  ++A  ++G+ R A  L  +   F
Sbjct: 176 VLRPLPQACLFDHLAKVLDAEKIPFTENALWQLASTAKGSVRDALSLTDQAIAF 229


>gi|322688320|ref|YP_004208054.1| DNA polymerase III gamma and tau subunits [Bifidobacterium longum
           subsp. infantis 157F]
 gi|320459656|dbj|BAJ70276.1| DNA polymerase III gamma and tau subunits [Bifidobacterium longum
           subsp. infantis 157F]
          Length = 970

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 59/282 (20%), Positives = 93/282 (32%), Gaps = 28/282 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     RP T E   GQ +    L   ++  K     L H  LF GP G GKT+ A+++A
Sbjct: 4   ALYRRYRPDTFEGVIGQDQVTVPLMRALDEGK-----LTHAYLFSGPRGCGKTSSARILA 58

Query: 76  RELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------P 127
           R +      TS P        DLA         DV+ ID      +     L       P
Sbjct: 59  RCVNCAKGPTSHPCGECESCKDLA--TGGPGSIDVVEIDAASHNGVDDARELRERAGFAP 116

Query: 128 AMEDFQLDLMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR---FGI 176
           A + +++ ++         G     + V+        I ATT    +   ++ R   +  
Sbjct: 117 ARDRYKIFILDEAHMVTQQGFNALLKIVEEPPEHVMFIFATTEPDKVIGTIRSRTHHYPF 176

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
            +         L+TI  +        V   A        R T  +  +L+    +     
Sbjct: 177 RLVPQEVMGPYLETICDKEGIKPEPGVLKLAMRAGGGSMRDTLSVLDQLMVGSVEGVITH 236

Query: 237 HAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
            A          AL+  A+D +  D        +I +   GG
Sbjct: 237 DAAVALLGFTPEALIGEAVDAV-IDHNGEALYGVIQKVVVGG 277


>gi|302687482|ref|XP_003033421.1| hypothetical protein SCHCODRAFT_54371 [Schizophyllum commune H4-8]
 gi|300107115|gb|EFI98518.1| hypothetical protein SCHCODRAFT_54371 [Schizophyllum commune H4-8]
          Length = 343

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 53/296 (17%), Positives = 99/296 (33%), Gaps = 40/296 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP TL++     +  + +  FIE        L H+LF GPPG GKT+    VAR
Sbjct: 27  PWVEKYRPVTLDDVVSHKDITTTIDKFIE-----KNRLPHLLFYGPPGTGKTSTILAVAR 81

Query: 77  -----ELGVNFRSTSGPVIAKAGDLAALLTN-LEDRDVL-------FIDEIHRLSIIVEE 123
                E        +         +   +    E R +         +DE   ++   + 
Sbjct: 82  RIYGPEYRKQILELNASDDRGIDVVREQIKQFAETRTLFSKGFKLVILDEADMMTQAAQA 141

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
            L   +E +                              VG +   +Q R     R +  
Sbjct: 142 ALRRVIEQYTR------------------NVRFCIICNYVGKIAPAIQSRC-TRFRFSPL 182

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            I++++  V    +  G+ +T +    +   +RG  R    +L+      E      +  
Sbjct: 183 PIKEVERRVDLVIEAEGVTITPDGKAALLRLARGDMRRVLNVLQACYAAYEKITENEVYA 242

Query: 244 EI--ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
                  A +   ++ M  D+    Y  MI++      + ++ ++AG  +  D IE
Sbjct: 243 CTGAPHPADIETIVNSMLGDEFTTAY-EMISKMKTERGLALQDLTAGAFDYIDTIE 297


>gi|291303584|ref|YP_003514862.1| DNA polymerase III subunits gamma and tau [Stackebrandtia
           nassauensis DSM 44728]
 gi|290572804|gb|ADD45769.1| DNA polymerase III, subunits gamma and tau [Stackebrandtia
           nassauensis DSM 44728]
          Length = 690

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 57/206 (27%), Gaps = 44/206 (21%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP++  E  GQ      L   I   +         LF GP G GKT+ A+++AR
Sbjct: 4   ALYRKYRPQSFAEVIGQEHVTEPLISAISNGRLNHAY----LFSGPRGCGKTSSARILAR 59

Query: 77  ELGV--------------------------NFRSTSGPVIAKAGDLAALLTNL------E 104
            L                            +             D   L           
Sbjct: 60  SLNCAKGPTPTPCGECDSCVGLSAGGGGSIDVIEIDAASHGGVDDARELRERAVFAPVNS 119

Query: 105 DRDVLFIDEIHRLSIIVEEILYPAME---DFQLDLMVGEGPSARSVKINL----SRFTLI 157
              +  IDE H +S      L   +E   D+ + +     P      I        F LI
Sbjct: 120 RYKIYVIDEAHMVSSAGFNALLKLVEEPPDYVMFVFATTEPEKVLPTIRSRTHHYPFRLI 179

Query: 158 AATTRVGLLTNPLQDRFGIPIRLNFY 183
                 G L   L    GI +  + Y
Sbjct: 180 PPAAMRG-LCEKLCHEEGITVEESVY 204


>gi|303279056|ref|XP_003058821.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226459981|gb|EEH57276.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 865

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 61/338 (18%), Positives = 117/338 (34%), Gaps = 46/338 (13%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           ++  G  +    +  FI   + R      ++  VGPPG+GKT++ Q +AR L   F   S
Sbjct: 350 DDHYGLEDVKERILEFIAVGQLRGTTQGKIITLVGPPGVGKTSIGQSIARALDRKFFRFS 409

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              ++   ++                        D  V+ IDE+ +L    +        
Sbjct: 410 VGGLSDVAEIKGHRRTYVGAMPGKLVQCLKSTGVDNPVVLIDEVDKLGRGYQGDPASALL 469

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V ++LS+   +     +  +  PL DR  + +RL+ 
Sbjct: 470 ELLDPEQNGSFLD-------HYLDVPVDLSKVLFVCTANVLDTIPGPLLDRMEV-VRLSG 521

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  ++   I +R  +      +     E ++  +    +     R         H + I 
Sbjct: 522 YIADEKNAIARRYLEKNAKERSGVGESEASITDQAMKSLIEDYCREAGVRNLQKHLEKIY 581

Query: 243 RE--------IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRD 294
           R+            A  R+   +   +  + +     A N     +    ++   +   D
Sbjct: 582 RKVALKLAKSKGPEASKRVGEARAKEEVAEAKQQLADAENGVKDAIDASAVAGEHAIAVD 641

Query: 295 A----IEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
           A    IE + +P        + TP G ++  +AW  +G
Sbjct: 642 AGKDLIEYVGQPPFQTDRIYETTPPG-VVTGLAWTSMG 678


>gi|91775925|ref|YP_545681.1| DNA polymerase III, tau subunit [Methylobacillus flagellatus KT]
 gi|91709912|gb|ABE49840.1| DNA polymerase III, tau subunit [Methylobacillus flagellatus KT]
          Length = 572

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 56/346 (16%), Positives = 117/346 (33%), Gaps = 47/346 (13%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP++ +E  GQ          +  A  +       LF G  G+GKTTL++++A+ L    
Sbjct: 11  RPKSFDELVGQEHVV----RALTNALQQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCER 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAMEDFQLD 135
             ++ P     G   A +   +   + +++        +  ++ ++E+ +Y   +     
Sbjct: 67  GVSANP----CGQCTACVAIDKGSFLDYVEMDAASNRGVDDMTSLLEKAIYAPTQGRYKV 122

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            M+ E             ++++   +    I ATT    +   +  R  +   L      
Sbjct: 123 YMLDEVHQLTGHAFNAMLKTLEEPPAHVKFILATTDPQKVPVTILSRC-LQFNLRQMSSS 181

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
            +   +Q       +     A   I   + G+ R A  LL +   +   +  +   R   
Sbjct: 182 GIAAHLQHVLTQENITFEPVALQLIGRSANGSMRDALSLLDQAIAYGGDSVNEKEVR-TM 240

Query: 247 DAALLRLAIDKM--GFDQLDLRYLTMIARNFGGGPVGIET----ISAGLSE--PRDAIED 298
             A+ +  + ++       D   L   AR      +  +     ++  L E     A+ D
Sbjct: 241 LGAIDQAYLFELLNALLAQDGNALLAQARAMEERAISFDAALSDLANLLHEIAIAQAVPD 300

Query: 299 LIE---PYMIQQGFIQRTPRGR--------LLMPIAWQHLGIDIPH 333
            I    P   +Q  +    R R         +  +A + LG+    
Sbjct: 301 SIAIDHPD--RQTLLDIAARMRPEEIQLYYQIALLARRDLGLAPDE 344


>gi|167521884|ref|XP_001745280.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163776238|gb|EDQ89858.1| predicted protein [Monosiga brevicollis MX1]
          Length = 683

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 55/282 (19%), Positives = 98/282 (34%), Gaps = 43/282 (15%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI   K R      +L F GPPG+GKT++A+ +AR L   +   S
Sbjct: 212 EDHYGMKDVKDRVLEFIAVGKLRNSMHGKILTFSGPPGVGKTSIAKSIARALNREYYRFS 271

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSI--------IVE 122
              +    ++                           ++ +DE+ ++           + 
Sbjct: 272 VGGLHDVAEIKGHRRTYVGAMPGKPIQCLKTTGTQNPLILLDEVDKIGRGVHGDPTSSLL 331

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L PA     LD  +        V ++LS+   I     +  +  PL DR  I     +
Sbjct: 332 ELLDPAQNSGFLDHYL-------DVPVDLSKVLFICTANVLDTIPGPLLDRMEIIQLSGY 384

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH-AKTI 241
              E         AK   +    + +   A +   T      L R     + V +  K I
Sbjct: 385 MADEKRA-----IAKQYLIPEAQKTSGVTAEQLEITDEALDVLNRAYCRESGVRNLEKHI 439

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIE 283
            +    AAL  +  +     ++D   L+    ++ G PV + 
Sbjct: 440 DKIHRKAALKLVRDNAKTL-RVDASNLS----DYVGQPVFLS 476


>gi|164656737|ref|XP_001729496.1| hypothetical protein MGL_3531 [Malassezia globosa CBS 7966]
 gi|159103387|gb|EDP42282.1| hypothetical protein MGL_3531 [Malassezia globosa CBS 7966]
          Length = 349

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 52/159 (32%), Gaps = 23/159 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA- 75
             +   RP +L++        + L+ FI A       L H+LF GPPG GKT+    +A 
Sbjct: 24  PWVEKYRPSSLDQIMSHQHITATLEKFITA-----NQLPHLLFYGPPGTGKTSTIMALAA 78

Query: 76  ----RELGVNFRSTSGPVIAKAGDLAALLTN-LEDRDVL----------FIDEIHRLSII 120
                    N    +         +   +      R+V            +DE   ++  
Sbjct: 79  RLYGASFRNNVLELNASDDRGIDVVRGQIKAFASTRNVFSTQKDTFKLVILDEADAMTQA 138

Query: 121 VEEILYPAMEDFQ--LDLMVGEGPSARSVKINLSRFTLI 157
            +  L   ME +   +   +      + +    SR T  
Sbjct: 139 AQAALRRVMEQYTRNVRFCIICNYVNKIIPAIQSRCTRF 177


>gi|217421704|ref|ZP_03453208.1| DNA polymerase III, subunits gamma and tau [Burkholderia
           pseudomallei 576]
 gi|217395446|gb|EEC35464.1| DNA polymerase III, subunits gamma and tau [Burkholderia
           pseudomallei 576]
          Length = 712

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 85/229 (37%), Gaps = 27/229 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+      GQ      L   ++  +     L H  LF G  G+GKTTL+++ A+ L   
Sbjct: 11  RPKDFASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAMEDFQL 134
              TS P     G   A     E R V +++        +  ++ ++E  +Y  ++    
Sbjct: 66  TGVTSQP----CGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             M+ E             ++++        I ATT    +   +  R  +   L     
Sbjct: 122 VYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPA 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
             + + ++R      +A   +A   +A  ++G+ R A  L  +   ++ 
Sbjct: 181 GHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSA 229


>gi|218246670|ref|YP_002372041.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8801]
 gi|257059712|ref|YP_003137600.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8802]
 gi|218167148|gb|ACK65885.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8801]
 gi|256589878|gb|ACV00765.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8802]
          Length = 640

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 65/293 (22%), Positives = 109/293 (37%), Gaps = 28/293 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           + E+  G  EA   L+  +   K         A+    VL VGPPG GKT LA+ +A E 
Sbjct: 185 SFEDVAGIDEAKEELQEVVTFLKQPEKFTAIGAKIPKGVLLVGPPGTGKTLLAKAIAGEA 244

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG           A  +  L    ++    ++FIDEI  +            +
Sbjct: 245 GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCLIFIDEIDAVGRQRGVGYGGGND 304

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E       +       +IAAT R  +L   L    RF   + +++ +++
Sbjct: 305 EREQTLNQLLTEMDGFEGNRG----IIVIAATNRPDVLDKALLRPGRFDRQVVVDYPDLK 360

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++  A+   +                T      +L     F      + IT    
Sbjct: 361 GRQGILEVHARNKKVDQEVSLEAIARRTPGFTGADLANVLNEAAIFTARRRKEAITMTEI 420

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           + A+ R+     G   +D +   +IA +  G  V        L E  DA+E +
Sbjct: 421 NDAIDRVVAGMEGTPLVDSKSKRLIAYHEIGHAV-----VGSLHEGHDAVEKV 468


>gi|6322994|ref|NP_013066.1| Rix7p [Saccharomyces cerevisiae S288c]
 gi|2492526|sp|Q07844|RIX7_YEAST RecName: Full=Ribosome biogenesis ATPase RIX7
 gi|1360222|emb|CAA97483.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|285813391|tpg|DAA09287.1| TPA: Rix7p [Saccharomyces cerevisiae S288c]
          Length = 837

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 52/219 (23%), Positives = 81/219 (36%), Gaps = 18/219 (8%)

Query: 28  EEFTGQVEACSNLKVFIEAA--KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRST 85
           ++   Q+     L +           E    VL  GPPG GKT++A  +A EL V F S 
Sbjct: 211 DDVVAQLMELIGLPILHPEIFLSTGVEPPRGVLLHGPPGCGKTSIANALAGELQVPFISI 270

Query: 86  SGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           S P +          K  DL     +L    ++F DEI  ++   +      ME   +  
Sbjct: 271 SAPSVVSGMSGESEKKIRDLFDEARSLAP-CLVFFDEIDAITPKRDGGAQREMERRIVAQ 329

Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQR 194
           ++         K N     +I AT R   L   L+   RF   I LN         I+++
Sbjct: 330 LLTSMDELTMEKTNGKPVIIIGATNRPDSLDAALRRAGRFDREICLNVPNEVSRLHILKK 389

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
            +    +      A + A  ++ TP   G  L+ +   A
Sbjct: 390 MSDNLKID----GAIDFAKLAKLTPGFVGADLKALVTAA 424



 Score = 49.7 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 79/225 (35%), Gaps = 16/225 (7%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLT 101
           K    A   VL  GPPG GKT LA+ VA E   NF S  GP +           +  + T
Sbjct: 561 KVGISAPGGVLLWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESERSIRQVFT 620

Query: 102 NLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA 159
                   V+F DE+  L     +          ++ ++ E       +       +I A
Sbjct: 621 RARASVPCVIFFDELDALVPRR-DTSLSESSSRVVNTLLTELDGLNDRRG----IFVIGA 675

Query: 160 TTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLA-VTDEAACEIAMRSR 216
           T R  ++   +    R    + +     E+   I++   K  G    +D    EI    +
Sbjct: 676 TNRPDMIDPAMLRPGRLDKSLFIELPNTEEKLDIIKTLTKSHGTPLSSDVDFEEIIRNEK 735

Query: 217 GTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
                   L   VR+ + +A  +   +     ++L   +DK   D
Sbjct: 736 CNNFSGADLAALVRESSVLALKRKFFQSEEIQSVLDNDLDKEFED 780


>gi|328956232|ref|YP_004373565.1| DNA polymerase III, subunits gamma and tau [Coriobacterium
           glomerans PW2]
 gi|328456556|gb|AEB07750.1| DNA polymerase III, subunits gamma and tau [Coriobacterium
           glomerans PW2]
          Length = 731

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 84/233 (36%), Gaps = 21/233 (9%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           D+     RP T +   GQ    S L    E A A        LF GP G GKTT+A+++A
Sbjct: 2   DSLYRTYRPLTFDSVVGQDHVVSTL----EHAIAEGRCSHAYLFCGPRGTGKTTMARILA 57

Query: 76  RELGVNFRSTSGP-VIAKAGDLAALLTNLEDRDVLFIDEIHRL--SIIVEEILYP----- 127
           + L       SG  +        +L+ +    DV  +D   R     + EEI+       
Sbjct: 58  KALLCERSEGSGGCMPDGTCAECSLIADGTHPDVYELDAASRTGVDNVREEIIGSVNFAP 117

Query: 128 ---AMEDFQLDLMVGEGPSA-----RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
              + + + +D +     +A     ++++   +    +  TT    +   +  R      
Sbjct: 118 VRGSHKIYIIDEVHMLTTAAFNALLKTLEEPPAHVVFVLCTTDPHKIPETILSRCQRFDF 177

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
                 + +  +        G    +EA   +A  +RG  R A   L ++  F
Sbjct: 178 RRISCADIVARLAL-ICDAEGFERDEEALEIVARHARGGMRDALSTLEQLSVF 229


>gi|326784294|ref|YP_004324752.1| clamp loader subunit [Synechococcus phage S-SSM5]
 gi|310003525|gb|ADO97921.1| clamp loader subunit [Synechococcus phage S-SSM5]
          Length = 314

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 54/269 (20%), Positives = 100/269 (37%), Gaps = 36/269 (13%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
            +   RP+T++E        +  K FIE  +     + ++L  G  G+GKTT+A+ +  E
Sbjct: 7   WVEKYRPQTVDECILPESVKTTFKSFIEQGE-----IPNLLLSGTAGVGKTTIAKALCNE 61

Query: 78  LGVNFRSTSGP--------VIAKAGDLAAL--LTNLEDRDVLFIDEIHRLSIIVEEILYP 127
           LG ++   +G         V  +A + AA   LT      VL IDE    +  V+ +L  
Sbjct: 62  LGADYYVINGSDEGRFLDTVRNQAKNFAATVSLTASARHKVLIIDEADNTTPDVQLLLRA 121

Query: 128 AMEDFQLD--LMVGEGPSARSVKINLSRFTLIAATTR---VGLLTNPLQDRFGIPIRLNF 182
           ++E+FQ +   +       + ++   SR T++    R      L     +R    ++   
Sbjct: 122 SIEEFQKNCRFIFTCNFKNKIIEPLHSRTTVVEFNVRGQTKQELAGAFFNRCKDILQREE 181

Query: 183 --YEIEDLKTIVQ-------RGAKLTG----LAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
             ++   +  +VQ       R              D         +     +A    +R 
Sbjct: 182 VTFQPRVVAEVVQKYFPDFRRTLNELQRYASTGSIDTGILAALGDANVDSLVASMKAKRF 241

Query: 230 RDFAEVAHAKTITREIADAALLRLAIDKM 258
            D   V    T   +   A+++R   D +
Sbjct: 242 ND---VKKWVTQNLDSDPASIMRKLYDSL 267


>gi|296284437|ref|ZP_06862435.1| Microtubule-severing ATPase [Citromicrobium bathyomarinum JL354]
          Length = 411

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 60/254 (23%), Positives = 91/254 (35%), Gaps = 32/254 (12%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVARE 77
           T ++F G     +  K  IE    R + L          +LF GPPG GKT LA+++A +
Sbjct: 154 TFDDFGGYKGVVARAKELIETQLERRDELEKIGARPVKGILFTGPPGTGKTHLARIIANQ 213

Query: 78  LGVNFRSTSGPVIAKA--GDLAALLTNL--------EDRDVLFIDEIHRLSIIV----EE 123
            G +F   SGP I     GD   LL  +          + ++F DEI  ++       +E
Sbjct: 214 AGASFYDISGPAIVSKWLGDTEELLRKIFEHAKSADSGKAIIFFDEIDSIAENRSGDSQE 273

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLN 181
                +  F L LM G   S  +         +IAAT R   L   L    RF   I   
Sbjct: 274 SSRRLVAQF-LTLMDGFDTSKNAT-------VVIAATNRADALDPALTRPGRFDWEIEFG 325

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
             ++ D   I++ G +    +               +      +       A     ++I
Sbjct: 326 LPDLMDRYEILKIGTRTIRCSDGLPLLEIATRTHDWSAARLTSIWTEAALIAASDRRESI 385

Query: 242 TREIADAALLRLAI 255
             E    A  R+A 
Sbjct: 386 AGEDLAQAYERVAR 399


>gi|297741773|emb|CBI33002.3| unnamed protein product [Vitis vinifera]
          Length = 596

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 48/196 (24%), Positives = 79/196 (40%), Gaps = 21/196 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALL-------TNLEDRD 107
           VLF GPPG GKT+ A+V+A + GV         I     G+   LL           +  
Sbjct: 361 VLFEGPPGTGKTSCARVIANQAGVPLVYLPLESIMSKYYGESERLLGKVFVHANEFPEGA 420

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           ++F+DE+   ++     ++ A     L +++ +       K    +  +IAAT R   L 
Sbjct: 421 IVFLDEVDSFAVSRSREMHEATRRI-LSVILRQIDGFEQDK----KVVVIAATNRKQDLD 475

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             L  RF   I     +  D + I  + AK    +       E+   +  T  ++GR +R
Sbjct: 476 PALMSRFDSMITFGLPDNHDRQKIAAQFAKHLTES-------ELVEFATATEGMSGRDIR 528

Query: 228 RVRDFAEVAHAKTITR 243
            +   AE   A  + R
Sbjct: 529 DICQQAERHWASKVIR 544


>gi|33519765|ref|NP_878597.1| DNA polymerase III subunit gamma [Candidatus Blochmannia
           floridanus]
 gi|33504110|emb|CAD83372.1| DNA polymerase III subunit gamma [Candidatus Blochmannia
           floridanus]
          Length = 541

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/238 (19%), Positives = 74/238 (31%), Gaps = 54/238 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+   E  GQ+         I  +          +F G  G GKTT+A++ A+ L    
Sbjct: 11  RPKKFCEVVGQLHVVK----AIIHSLNLNRMHHAYIFTGTRGSGKTTIARLFAKGLNCET 66

Query: 83  RSTS------------------------GPVIAKAGDLAALLTNLE------DRDVLFID 112
           + TS                            +K  D  + L N++         V  ID
Sbjct: 67  QITSDVCGSCKNCSDIESGCFIDLIEIDAASKSKVEDTRSFLDNVQYSPSQGKFKVYLID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS      L   +E+                         I  TT    L   +  
Sbjct: 127 EVHMLSRHSFNALLKTLEE------------------PPKHVKFILVTTEYQKLPETILS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEI-AMRSRGTPRIAGRLLRRV 229
           R  +        I  + T ++       + +  E + E  A  +RG+ R A  LL + 
Sbjct: 169 RC-LQFYFKPLNIIQIVTQLKYICNQENINIDTENSLEFLAYAARGSIRDALNLLEQA 225


>gi|317483358|ref|ZP_07942350.1| DNA polymerase III [Bifidobacterium sp. 12_1_47BFAA]
 gi|316915175|gb|EFV36605.1| DNA polymerase III [Bifidobacterium sp. 12_1_47BFAA]
          Length = 966

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 59/282 (20%), Positives = 93/282 (32%), Gaps = 28/282 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     RP T E   GQ +    L   ++  K     L H  LF GP G GKT+ A+++A
Sbjct: 4   ALYRRYRPDTFEGVIGQDQVTVPLMRALDEGK-----LTHAYLFSGPRGCGKTSSARILA 58

Query: 76  RELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------P 127
           R +      TS P        DLA         DV+ ID      +     L       P
Sbjct: 59  RCVNCAKGPTSHPCGECESCKDLA--TGGPGSIDVVEIDAASHNGVDDARELRERAGFAP 116

Query: 128 AMEDFQLDLMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR---FGI 176
           A + +++ ++         G     + V+        I ATT    +   ++ R   +  
Sbjct: 117 ARDRYKIFILDEAHMVTQQGFNALLKIVEEPPEHVMFIFATTEPDKVIGTIRSRTHHYPF 176

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
            +         L+TI  +        V   A        R T  +  +L+    +     
Sbjct: 177 RLVPQEVMGPYLETICDKEGIKPEPGVLKLAMRAGGGSMRDTLSVLDQLMVGSVEGVITH 236

Query: 237 HAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
            A          AL+  A+D +  D        +I +   GG
Sbjct: 237 DAAVALLGFTPEALIGEAVDAV-IDHNGEALYGVIQKVVVGG 277


>gi|221215165|ref|ZP_03588132.1| DNA polymerase III, subunits gamma and tau [Burkholderia
           multivorans CGD1]
 gi|221165101|gb|EED97580.1| DNA polymerase III, subunits gamma and tau [Burkholderia
           multivorans CGD1]
          Length = 498

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 85/229 (37%), Gaps = 27/229 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+      GQ      L   ++  +     L H  LF G  G+GKTTL+++ A+ L   
Sbjct: 11  RPKDFASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAMEDFQL 134
              TS P     G   A     E R V +++        +  ++ ++E  +Y  ++    
Sbjct: 66  TGVTSQP----CGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             M+ E             ++++        I ATT    +   +  R  +   L     
Sbjct: 122 VYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPA 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
             + + ++R      +A   +A   +A  ++G+ R A  L  +   ++ 
Sbjct: 181 GHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSA 229


>gi|213513822|ref|NP_001134786.1| replication factor C subunit 2 [Salmo salar]
 gi|209735998|gb|ACI68868.1| Replication factor C subunit 2 [Salmo salar]
          Length = 353

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 77/227 (33%), Gaps = 38/227 (16%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   +   RP  L E  G  E  S L+VF     AR   + +++  GPPG GKTT    +
Sbjct: 34  ELPWVEKYRPLKLNEIVGNEETVSRLEVF-----AREGNVPNIIIAGPPGTGKTTSILCL 88

Query: 75  AR------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIHRLSII 120
           AR            EL  +       V  K    A     L      ++ +DE   ++  
Sbjct: 89  ARALLGPAMKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDG 148

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            ++ L   ME +                   +RF    A      +  P+Q R  +    
Sbjct: 149 AQQALRRTMEIYSKT----------------TRF--ALACNASDKIIEPIQSRCAVLRYT 190

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
              + + +  +++   +   +   D     I   ++G  R A   L+
Sbjct: 191 KLRDEQIMMRLLEVVERENLVTSND-GLEAIIFTAQGDMRQALNNLQ 236


>gi|151941136|gb|EDN59514.1| ribosome export [Saccharomyces cerevisiae YJM789]
          Length = 837

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 52/219 (23%), Positives = 81/219 (36%), Gaps = 18/219 (8%)

Query: 28  EEFTGQVEACSNLKVFIEAA--KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRST 85
           ++   Q+     L +           E    VL  GPPG GKT++A  +A EL V F S 
Sbjct: 211 DDVVAQLMELIGLPILHPEIFLSTGVEPPRGVLLHGPPGCGKTSIANALAGELQVPFISI 270

Query: 86  SGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           S P +          K  DL     +L    ++F DEI  ++   +      ME   +  
Sbjct: 271 SAPSVVSGMSGESEKKIRDLFDEARSLAP-CLVFFDEIDAITPKRDGGAQREMERRIVAQ 329

Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQR 194
           ++         K N     +I AT R   L   L+   RF   I LN         I+++
Sbjct: 330 LLTSMDELTMEKTNGKPVIIIGATNRPDSLDAALRRAGRFDREICLNVPNEVSRLHILKK 389

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
            +    +      A + A  ++ TP   G  L+ +   A
Sbjct: 390 MSDNLKID----GAIDFAKLAKLTPGFVGADLKALVTAA 424



 Score = 49.7 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 79/225 (35%), Gaps = 16/225 (7%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLT 101
           K    A   VL  GPPG GKT LA+ VA E   NF S  GP +           +  + T
Sbjct: 561 KVGISAPGGVLLWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESERSIRQVFT 620

Query: 102 NLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA 159
                   V+F DE+  L     +          ++ ++ E       +       +I A
Sbjct: 621 RARASVPCVIFFDELDALVPRR-DTSLSESSSRVVNTLLTELDGLNDRRG----IFVIGA 675

Query: 160 TTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLA-VTDEAACEIAMRSR 216
           T R  ++   +    R    + +     E+   I++   K  G    +D    EI    +
Sbjct: 676 TNRPDMIDPAMLRPGRLDKTLFIELPNTEEKLDIIKTLTKSHGTPLSSDVDFEEIIRNEK 735

Query: 217 GTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
                   L   VR+ + +A  +   +     ++L   +DK   D
Sbjct: 736 CNNFSGADLAALVRESSVLALKRKFFQSEEIQSVLDNDLDKEFED 780


>gi|332992405|gb|AEF02460.1| DNA polymerase III subunits gamma and tau [Alteromonas sp. SN2]
          Length = 977

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 51/267 (19%), Positives = 84/267 (31%), Gaps = 59/267 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP    E  GQ    S +   ++      + L H  LF G  G+GKTT+A++ ++ L   
Sbjct: 11  RPGKFSELVGQEHVVSAISNALD-----NDRLHHAYLFTGTRGVGKTTIARIFSKSLNCE 65

Query: 82  FRSTSGP------------------------VIAKAGDLAALLTNLEDRD------VLFI 111
               S P                           K  D   LL N++ +       V  I
Sbjct: 66  EGQGSNPCGQCNTCKEIEQGNYVDLLEIDAASRTKVEDTRELLDNVQYKPTRGRYKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSKHSFNALLKTLEE------------------PPPHVKFLLATTDPQKLPITIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L     E +   +    +   L    +A   +A  ++G+ R A  L     D
Sbjct: 168 SRC-LQFNLKALSREQIVGQLNHILEQETLPFEPQALALLARAAQGSMRDALSL----TD 222

Query: 232 FAEVAHAKTITREIADAALLRLAIDKM 258
            A       +   +    L  +  +++
Sbjct: 223 QAIAQGGNAVNASVVTDMLGLMDKNQL 249


>gi|331268689|ref|YP_004395181.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum
           BKT015925]
 gi|329125239|gb|AEB75184.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum
           BKT015925]
          Length = 597

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 63/260 (24%), Positives = 109/260 (41%), Gaps = 26/260 (10%)

Query: 25  RTLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +T ++  GQ EA  +L   +       +  +  A+     L VGPPG GKT LA+ VA E
Sbjct: 146 KTFDDVAGQDEAKESLIEIVDFLHNPDKYVEIGAKLPKGALLVGPPGTGKTLLAKAVAGE 205

Query: 78  LGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
             V F S SG       V   A  +  L    E++   ++FIDEI  +    +  +    
Sbjct: 206 AKVPFFSLSGSSFVEMFVGMGAARVRDLFKQAEEKAPCIVFIDEIDAIGKSRDGAIGGGN 265

Query: 130 EDFQLDLMVGEGPSARSVKINLSR-FTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           ++ +  L       A     + S+   ++AAT R  +L   L    RF   + ++  +++
Sbjct: 266 DEREQTL---NQLLAEMDGFDASKGVVILAATNRPEVLDKALLRPGRFDRRVIVDTPDLK 322

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             ++I++  AK   ++  D    EIA   + TP   G  L  + + A +   K   + + 
Sbjct: 323 GRESILKVHAKEVKMS-EDVNLDEIA---KSTPGAVGADLANMVNEAALLAVKKGRKSVI 378

Query: 247 DAALLR-LAIDKMGFDQLDL 265
              L   + I   G ++ D 
Sbjct: 379 QQDLEEAVEIIIAGKEKKDR 398


>gi|301618395|ref|XP_002938599.1| PREDICTED: lon protease homolog, mitochondrial-like [Xenopus
           (Silurana) tropicalis]
          Length = 970

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/247 (17%), Positives = 86/247 (34%), Gaps = 37/247 (14%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI  ++ R      +L F GPPG+GKT++A+ +AR L   +   S
Sbjct: 512 EDHYGMEDVKKRILEFIAVSQLRGSTQGKILCFYGPPGVGKTSIARSIARALNREYFRFS 571

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ +L    +        
Sbjct: 572 VGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLILIDEVDKLGRGYQGDPSSALL 631

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V ++LS+   I        +  PL+DR  +     +
Sbjct: 632 ELLDPEQNSNFLD-------HYLDVPVDLSKVLFICTANVTETIPEPLRDRMEMINVSGY 684

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
              E L       A+   +           +++R T      L+++    + V + +   
Sbjct: 685 VAQEKLA-----IAEKYLVPQALTMCGLDEVKTRITSDALTVLIKQYCRESGVRNLQKQV 739

Query: 243 REIADAA 249
            ++   +
Sbjct: 740 EKVLRKS 746


>gi|256271958|gb|EEU06977.1| Rix7p [Saccharomyces cerevisiae JAY291]
          Length = 837

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 52/219 (23%), Positives = 81/219 (36%), Gaps = 18/219 (8%)

Query: 28  EEFTGQVEACSNLKVFIEAA--KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRST 85
           ++   Q+     L +           E    VL  GPPG GKT++A  +A EL V F S 
Sbjct: 211 DDVVAQLMELIGLPILHPEIFLSTGVEPPRGVLLHGPPGCGKTSIANALAGELQVPFISI 270

Query: 86  SGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           S P +          K  DL     +L    ++F DEI  ++   +      ME   +  
Sbjct: 271 SAPSVVSGMSGESEKKIRDLFDEARSLAP-CLVFFDEIDAITPKRDGGAQREMERRIVAQ 329

Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQR 194
           ++         K N     +I AT R   L   L+   RF   I LN         I+++
Sbjct: 330 LLTSMDELTMEKTNGKPVIIIGATNRPDSLDAALRRAGRFDREICLNVPNEVSRLHILKK 389

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
            +    +      A + A  ++ TP   G  L+ +   A
Sbjct: 390 MSDNLKID----GAIDFAKLAKLTPGFVGADLKALVTAA 424



 Score = 49.7 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 79/225 (35%), Gaps = 16/225 (7%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLT 101
           K    A   VL  GPPG GKT LA+ VA E   NF S  GP +           +  + T
Sbjct: 561 KVGISAPGGVLLWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESERSIRQVFT 620

Query: 102 NLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA 159
                   V+F DE+  L     +          ++ ++ E       +       +I A
Sbjct: 621 RARASVPCVIFFDELDALVPRR-DTSLSESSSRVVNTLLTELDGLNDRRG----IFVIGA 675

Query: 160 TTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLA-VTDEAACEIAMRSR 216
           T R  ++   +    R    + +     E+   I++   K  G    +D    EI    +
Sbjct: 676 TNRPDMIDPAMLRPGRLDKTLFIELPNTEEKLDIIKTLTKSHGTPLSSDVDFEEIIRNEK 735

Query: 217 GTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
                   L   VR+ + +A  +   +     ++L   +DK   D
Sbjct: 736 CNNFSGADLAALVRESSVLALKRKFFQSEEIQSVLDNDLDKEFED 780


>gi|119469545|ref|ZP_01612449.1| putative DnaX, DNA polymerase III, gamma/tau subunits
           [Alteromonadales bacterium TW-7]
 gi|119447080|gb|EAW28350.1| putative DnaX, DNA polymerase III, gamma/tau subunits
           [Alteromonadales bacterium TW-7]
          Length = 831

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 56/265 (21%), Positives = 82/265 (30%), Gaps = 59/265 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGV- 80
           RP+T  E  GQ      L   +         L H  LF G  G+GKTT+A++ A+ L   
Sbjct: 11  RPQTFHELVGQSHVKQALVNALT-----QNRLHHAYLFTGTRGVGKTTIARIFAKSLNCD 65

Query: 81  -----------------------NFRSTSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                  +          K  D   +L N++         V  I
Sbjct: 66  EGISASPCGQCSSCTDIEAGRYIDLLEIDAASRTKVEDTREILDNVQYAPTRGRYKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSKHSFNALLKTLEE------------------PPEHVKFLLATTDPQKLPVTIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   LN     ++KT +Q       L   ++A   IA  + G+ R A  L     D
Sbjct: 168 SRC-LQFNLNALSQSEIKTQLQHVLTQEQLRFDNDALSVIAKAADGSMRDALSL----TD 222

Query: 232 FAEVAHAKTITREIADAALLRLAID 256
            A       I  +   A L  +   
Sbjct: 223 QAIAQTNGDINNQAVQAMLGLMDTH 247


>gi|115487814|ref|NP_001066394.1| Os12g0209300 [Oryza sativa Japonica Group]
 gi|77553354|gb|ABA96150.1| ATPase, AAA family protein, expressed [Oryza sativa Japonica Group]
 gi|113648901|dbj|BAF29413.1| Os12g0209300 [Oryza sativa Japonica Group]
 gi|125578827|gb|EAZ19973.1| hypothetical protein OsJ_35564 [Oryza sativa Japonica Group]
          Length = 1174

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 81/243 (33%), Gaps = 32/243 (13%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M DR  L  +            RP+   E  GQ    +     +  A  R +     LF 
Sbjct: 396 MADRRSLSQK-----------YRPKLFSEIVGQ-HIVAQ---SLSNAITREKIAPAYLFQ 440

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GP G GKT+ A++ +  L       + P      +    L+      ++ +D  +R SI 
Sbjct: 441 GPRGTGKTSTARIFSMGLSCLAPGENKP-CGICKECTDFLSGNGTN-LIEVDASNRKSIN 498

Query: 121 VEEILY-----PAMEDFQLDLMVGEGPSARS---------VKINLSRFTLIAATTRVGLL 166
             + L       A        +V E     S         +   L R   +  T     L
Sbjct: 499 RIKNLLENIPPSATSSRYKLFVVDECHMVSSKLWSAFMKFLDEPLPRVVFVFITIDPDNL 558

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
              +  R    +     +I+ +   ++R      L V   A   IA+ S G+ R A  +L
Sbjct: 559 PRAVISRCQKYVFSKIKDIDIVCR-LRRICVKENLDVELAALDLIALNSDGSLRDAETML 617

Query: 227 RRV 229
            ++
Sbjct: 618 DQL 620


>gi|30248450|ref|NP_840520.1| dnaX; DNA polymerase III (subunits tau and gamma) protein
           [Nitrosomonas europaea ATCC 19718]
 gi|30138336|emb|CAD84344.1| dnaX; DNA polymerase III (subunits tau and gamma) protein
           [Nitrosomonas europaea ATCC 19718]
          Length = 525

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 51/255 (20%), Positives = 88/255 (34%), Gaps = 37/255 (14%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+   E  GQ       +  I + +     L H  LF G  G+GKTT+A+++A+ L   
Sbjct: 12  RPKDFSELVGQEHVV---RALINSMEQ--NRLHHAYLFTGTRGVGKTTVARILAKALNCE 66

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILY------PAMEDFQ 133
              T+ P     G  AA +   +    D++ +D      +     L       P    ++
Sbjct: 67  QGVTAAP----CGKCAACMAIDQGNFIDLIELDAASNTQVDAMRELLDNAQYAPVAARYK 122

Query: 134 LDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR---FGIPIRLNF 182
           + L+               ++++        I ATT    +   +  R   F +      
Sbjct: 123 VYLIDEVHMLSRSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQIPPS 182

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
             +E L  I+     + G+         +A  ++G+ R A  LL    D A       + 
Sbjct: 183 LIVERLTEILS----MEGIPADAAGLRLLAQAAKGSLRDALSLL----DQAIAFGNSVVN 234

Query: 243 REIADAALLRLAIDK 257
                A L  L  D 
Sbjct: 235 ESDTRAMLGVLDQDH 249


>gi|325186968|emb|CCA21512.1| replication factor C subunit 2 putative [Albugo laibachii Nc14]
          Length = 327

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 51/252 (20%), Positives = 79/252 (31%), Gaps = 43/252 (17%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   +   RP +L++     E  + LK     A AR   + +++  GPPG GKTT    +
Sbjct: 6   ETPWVEKYRPTSLDDVVANQETITCLK-----AMARDGNMTNIILSGPPGTGKTTSILCL 60

Query: 75  AR------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIHRLSII 120
           AR            EL  +       V  K    A    NL      ++ +DE   ++  
Sbjct: 61  ARALLGPALKHAILELNASDDRGIDTVRTKIKLFAQQKVNLPPGRHKLIILDEADSITGS 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            ++ L   ME +                   S      A      +  P+Q R  I    
Sbjct: 121 AQQALRRTMEIYS------------------STTRFALACNNSTKIIEPIQSRCAILRFT 162

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
                E +   +    +   L   D+    I   + G  R A   L+     A  A    
Sbjct: 163 RLKN-ELILERLLIICREERLTYQDDGLAAIIFTAEGDMRNAINNLQ-----ATHAGFGA 216

Query: 241 ITREIADAALLR 252
           IT      A  +
Sbjct: 217 ITDANVFKACDQ 228


>gi|319403646|emb|CBI77231.1| DNA polymerase III subunit tau [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 630

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/255 (18%), Positives = 88/255 (34%), Gaps = 21/255 (8%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M++    +             RP+   +  GQ      L    +  +         +  G
Sbjct: 1   MEQLIENTPATMAYRVLARKYRPQNFSDLIGQEAIVCTLNNAFKTGRIAQAW----MLTG 56

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPV--IAKAGDLAALLTNLEDRDVLFID-----EI 114
             G+GKTT A+++AR L    +    P       G+  A +      DV+ +D      I
Sbjct: 57  IRGVGKTTTARILARALNYKTKDIDQPTTLFDTLGEHCAQIIEGRHIDVIEMDAASHTGI 116

Query: 115 HRLSIIVEEILYPAMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGL 165
             +  I+E+I Y  +       ++ E             ++++        I ATT +  
Sbjct: 117 DDIREIIEQIRYRPVSARYKIYIIDEVHMLSTQAFNGLLKTLEEPPPHVKFIFATTEIRK 176

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           +   +  R      L   E   L T +++ A+L  +   D+A   IA  + G+ R A  +
Sbjct: 177 VPITILSRCQ-RFNLQRIETTVLVTHLRKVAQLEKVEAQDQALFMIARAAEGSVRDALSI 235

Query: 226 LRRVRDFAEVAHAKT 240
             +   +       T
Sbjct: 236 FDQAIAYGNGKVDAT 250


>gi|225868888|ref|YP_002744836.1| DNA polymerase III subunit gamma/tau [Streptococcus equi subsp.
           zooepidemicus]
 gi|225702164|emb|CAW99865.1| DNA polymerase III subunit gamma/tau [Streptococcus equi subsp.
           zooepidemicus]
          Length = 558

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 69/220 (31%), Gaps = 45/220 (20%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     R +T  E  GQ    + LK  +E+ K         LF GP G GKT+ A++ A+
Sbjct: 4   ALYRKYRSQTFAEMVGQSVISTTLKQAVESGKISHAY----LFSGPRGTGKTSAAKIFAK 59

Query: 77  ELGVNFR---------------------------STSGPVIAKAGDLAALLTNLEDR--- 106
            +    +                           + S   + +  D+    T    R   
Sbjct: 60  AMNCPNQVKGEPCNHCDICRDITTGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSRATY 119

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164
            V  IDE+H LS      L   +E+    +  ++      +     LSR           
Sbjct: 120 KVYIIDEVHMLSTGAFNALLKTLEEPSDNVVFILATTELHKIPATILSRVQRFEFKAIKQ 179

Query: 165 ----LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
                    + D+ GI      YE E L  I +R      
Sbjct: 180 AAICEHLAAILDKEGIA-----YETEALHLIARRAEGGMR 214


>gi|168181143|ref|ZP_02615807.1| DNA polymerase III, gamma and tau subunit [Clostridium botulinum
           NCTC 2916]
 gi|226947244|ref|YP_002802335.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum A2
           str. Kyoto]
 gi|182668020|gb|EDT79999.1| DNA polymerase III, gamma and tau subunit [Clostridium botulinum
           NCTC 2916]
 gi|226840992|gb|ACO83658.1| DNA polymerase III, gamma and tau subunit [Clostridium botulinum A2
           str. Kyoto]
 gi|322804300|emb|CBZ01850.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum
           H04402 065]
          Length = 541

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 82/225 (36%), Gaps = 29/225 (12%)

Query: 23  RPRTLEEFTGQVEACSNLK-VFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           RPRT +E  GQ      LK   IE   A A      LF G  G GKT+ A+++++ +   
Sbjct: 11  RPRTFKEVVGQKHITVTLKNQVIEKRIAHA-----YLFCGTRGTGKTSTAKILSKAVNC- 64

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI--------IVEEILYPAMEDFQ 133
                 P   +  +   +   +    ++ + E+   S         ++E + YP  E   
Sbjct: 65  ----LNPKDGEPCNECEICNKINSGTLMDVIEMDAASKRKLEDIKEVIENVKYPPQEGKN 120

Query: 134 LDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
              ++ E             ++++   S    I ATT    L   +  R           
Sbjct: 121 KVYIMDEVHMLTQEAVNAFLKTLEEPPSNVIFILATTDPQKLPITILSRCQ-RFDFRRIR 179

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
            E++   ++      G+   D++   IA  S G  R A  +L +V
Sbjct: 180 NEEIFERLRAIVSEQGIYADDKSLNLIARMSDGAMRDALSILDQV 224


>gi|57640604|ref|YP_183082.1| cell division protein CDC48 [Thermococcus kodakarensis KOD1]
 gi|6513847|dbj|BAA87866.1| Pk-cdcA [Thermococcus kodakaraensis]
 gi|57158928|dbj|BAD84858.1| CDC48/VCP homolog, AAA superfamily [Thermococcus kodakarensis KOD1]
          Length = 835

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 68/304 (22%), Positives = 113/304 (37%), Gaps = 32/304 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
           T E+  G  +A   ++  +E      E            VL  GPPG GKT LA+ VA E
Sbjct: 207 TYEDIGGLSDAIQKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANE 266

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM 129
              +F + +GP I           L  +    E+    ++FIDEI  ++   EE++    
Sbjct: 267 ANAHFIAINGPEIMSKFYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVVGEVE 326

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
           +     L+            +  +  +IAAT R   L   L+   RF   I +   + + 
Sbjct: 327 KRVVSQLLT-----LMDGLKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQG 381

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV-RDFAEVAHAKTITREIA 246
            K I+Q   +   L   D     +    R           RV +  AEV +AK  +    
Sbjct: 382 RKEILQIHTRGMPLE-PDYDKEAVLRVLREIREKGNFDAERVDKIIAEVENAKNESEVKE 440

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
                     ++    +D + L  +A    G  VG + ++A   E       ++   +I+
Sbjct: 441 ALKKDAEIYSEVRNRLID-KMLDELAEVTHG-FVGAD-LAALAREAAM----VVLRRLIK 493

Query: 307 QGFI 310
           +G I
Sbjct: 494 EGKI 497



 Score = 52.8 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 58/162 (35%), Gaps = 21/162 (12%)

Query: 26  TLEEFTGQVEACSNLKVFIE--------AAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
             E+  G  +    L+  +E          +   E    +L  GPPG GKT LA+ VA E
Sbjct: 542 RWEDIGGLEDVKQELREAVEWPLKYPKAFERLGIEPPKGILLYGPPGTGKTLLAKAVANE 601

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAM 129
              NF +  GP +           +  +          V+FIDEI  ++         + 
Sbjct: 602 SQANFIAIRGPEVLSKWVGETEKRIREIFRKARQAAPTVVFIDEIDAIAPAR-----GSE 656

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
            D   D ++ +  +        S   +I AT R  ++   L 
Sbjct: 657 GDRVTDRLINQLLTEMDGIQENSGVVVIGATNRPDIIDPALL 698


>gi|113461343|ref|YP_719412.1| DNA polymerase III subunits gamma and tau [Haemophilus somnus
           129PT]
 gi|112823386|gb|ABI25475.1| DNA polymerase III, gamma subunit / DNA polymerase III, tau subunit
           [Haemophilus somnus 129PT]
          Length = 667

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 52/305 (17%), Positives = 93/305 (30%), Gaps = 64/305 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGV- 80
           RP+T  E  GQ    + L     +       L H  LF G  G+GKT++A++ A+ L   
Sbjct: 11  RPKTFSEVVGQEHILTAL-----SNGLCENRLHHAYLFSGTRGVGKTSIARLFAKGLNCI 65

Query: 81  -----------------------NFRSTSGPVIAKAGDLAALLTNLEDRD------VLFI 111
                                  +          K  D   LL N++ +       V  I
Sbjct: 66  RGVTAEPCGECEHCKAIEEGRFIDLIEIDAASRTKVEDTRELLDNVQYKPTQGRYKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSRHSFNALLKTLEE------------------PPEYVKFLLATTDPQKLPITIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L     + +   ++   +   +     A  ++A  ++G+ R +  L     D
Sbjct: 168 SRC-MQFHLKALSEKQIAQHLEFILQQENIPFEYPALEKLATAAQGSIRDSLSL----TD 222

Query: 232 FAEVAHAKTITREIADAALLRLAIDK-----MGFDQLDLRYLTMIARNFGGGPVGIETIS 286
            A       ++ +     L  L  ++         Q +   L    +         + + 
Sbjct: 223 QAIAMGNANVSLDTVSIMLGLLDDNQPIDILYALQQGNGEMLMKAIQTVAEKGADWDKLL 282

Query: 287 AGLSE 291
             L+E
Sbjct: 283 VTLAE 287


>gi|229581482|ref|YP_002839881.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus
           Y.N.15.51]
 gi|228012198|gb|ACP47959.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus
           Y.N.15.51]
          Length = 769

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 56/291 (19%), Positives = 101/291 (34%), Gaps = 31/291 (10%)

Query: 24  PR-TLEEFTGQVEACSNLKVFIEA--------AKARAEALDHVLFVGPPGLGKTTLAQVV 74
           PR T E+  G       ++  +E          +   E    +L  GPPG+GKT LA+ +
Sbjct: 187 PRVTYEDIGGMKNIIEKVRELVELPLRHPELFKRLGIEPPKGILLYGPPGVGKTLLAKAI 246

Query: 75  ARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILY 126
           A E    F S +GP I           L  +  + +     ++F+DEI  ++   +E++ 
Sbjct: 247 ANETDAYFTSINGPEIMSKFYGESEQRLREIFEDAKKHAPAIIFVDEIDAIAPKRDEVIG 306

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
                    L+            N     +IAAT R   +   L+   RF   I +   +
Sbjct: 307 EVERRVVAQLLT-----LMDGLENRGNVIVIAATNRPSAVDPALRRPGRFDREIEIPLPD 361

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            +    I+Q   +   L+   +      M    T      L+R            ++ R 
Sbjct: 362 KQGRLEILQIHTRNMPLSKDVDLEKLADMTHGYTGADLSALVREAAM-------NSLRRY 414

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDA 295
           +    L +  I     + ++++    I       P G+  I   + E +  
Sbjct: 415 LPKIDLNQDKIPPEILESMEVKMEDFINAFKEIVPSGLREIYIEVPEVKWT 465



 Score = 50.5 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 40/152 (26%), Positives = 62/152 (40%), Gaps = 14/152 (9%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLAALLTNLEDR--- 106
           E    +L  GPPG GKT LA+ VA E G NF +  GP I     G+    +  +  +   
Sbjct: 497 EPPKGILLFGPPGTGKTMLAKAVATESGANFIAVRGPEILSKWVGESEKAVREIFRKARM 556

Query: 107 ---DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
               V+F DEI  ++ I       + +    + +V +  +       L    +IAAT R 
Sbjct: 557 YAPAVIFFDEIDSIAPIR----GISYDSGVTERIVNQLLAEMDGIEKLENVVVIAATNRP 612

Query: 164 GLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQ 193
            +L   L    RF   I +   +      I++
Sbjct: 613 DILDPALLRPGRFEKLIYVPPPDKRARIEILK 644


>gi|71280111|ref|YP_268529.1| ATP-dependent M41 family peptidase [Colwellia psychrerythraea 34H]
 gi|71145851|gb|AAZ26324.1| ATP-dependent peptidase, M41 family [Colwellia psychrerythraea 34H]
          Length = 1284

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 52/253 (20%), Positives = 89/253 (35%), Gaps = 30/253 (11%)

Query: 26   TLEEFTGQVEACSNLKVFIE--AAKARAEALDHV--------LFVGPPGLGKTTLAQVVA 75
            +L++  G   A    +  IE  +     E L +         LF GPPG GKT LA+ VA
Sbjct: 849  SLDDVIGLERAK---RRLIEVVSWLKAPEKLLNFGIKIPTGFLFSGPPGTGKTLLAKAVA 905

Query: 76   RELGVNFRST---------SGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
             E  + F S          SG        L A         ++FIDEI  ++    +   
Sbjct: 906  GECELPFFSVAASELSTPHSGGTTENIKQLFATARKYAP-SIIFIDEIDAIAAQRTDNSD 964

Query: 127  PAMEDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNF 182
             +  D  L +  ++ E       ++      ++AAT    LL + +    RF   I  + 
Sbjct: 965  GSSRDKNLTVNALLTEMDGFSIAEV---PVFVMAATNHPQLLDSAITRPGRFDETIYCDL 1021

Query: 183  YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
                      +R A    L   +    ++   ++G        + R   +  V   + +T
Sbjct: 1022 PNKNARLIFFKRFASKHKLNWQETELQQLVSSAQGMSSAEIDQVLRESIYQAVGENQQLT 1081

Query: 243  REIADAALLRLAI 255
             E     ++R+  
Sbjct: 1082 TEHIKQTMIRIVY 1094


>gi|73669293|ref|YP_305308.1| AAA ATPase family protein [Methanosarcina barkeri str. Fusaro]
 gi|72396455|gb|AAZ70728.1| AAA family ATPase [Methanosarcina barkeri str. Fusaro]
          Length = 372

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 52/246 (21%), Positives = 96/246 (39%), Gaps = 22/246 (8%)

Query: 26  TLEEFTGQVEACSN---LKVFIEAAKARAE-ALDHVLFVGPPGLGKTTLAQVVARELGVN 81
             E+  GQ  A      ++ F+E  +   + A  ++LF GP G GKT LA+ +A +  V 
Sbjct: 121 KFEDVIGQELAKQKCRLIERFLEEPERFGKWAPRNILFFGPSGTGKTMLAKALANKTDVL 180

Query: 82  FRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEIH--RLSIIVEEILYPAMED 131
                   +     G+ A  +  L DR       ++FIDE+    L    +E+       
Sbjct: 181 IIPVKATQLIGEYVGEGARQIHQLYDRAEEMAPCIIFIDELDAIALDRKFQEL------R 234

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
             +  +V    +     +       I +T R+  L + ++ RF   I       E++  I
Sbjct: 235 GDVSEIVNALLTEMDGIVERDGVCTICSTNRIYSLDSAIRSRFEEEIEFILPREEEIVEI 294

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTP--RIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            +   K   L V D     +A ++ G     +  ++L+     A +   + +T +  + A
Sbjct: 295 FESNVKTFPLQVEDCNFRALAKKANGLSGRDLVEKVLKTALHQAIIEDREIVTNQDFENA 354

Query: 250 LLRLAI 255
           L +L  
Sbjct: 355 LAKLGR 360


>gi|328956610|ref|YP_004373996.1| DNA polymerase III subunits gamma and tau [Carnobacterium sp. 17-4]
 gi|328672934|gb|AEB28980.1| DNA polymerase III subunits gamma and tau [Carnobacterium sp. 17-4]
          Length = 605

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 59/295 (20%), Positives = 105/295 (35%), Gaps = 36/295 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  ++  GQ      L+     A A+ +     LF GP G GKT+ A++ A+ +    
Sbjct: 11  RPQRFQDIAGQKAITQTLR----NALAQEKTSHAYLFTGPRGTGKTSAAKIFAKAINCPN 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P      ++   +T  +  DV+ ID      +  +  I ++  Y          +
Sbjct: 67  LKDGEPCNEC--EMCQSITQGQLNDVIEIDAASNNGVEEIRDIRDKAKYAPTSAEYKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQD---RFGIPIRLNFYEI 185
           + E             ++++        I ATT    +   +     RF           
Sbjct: 125 IDEVHMLTTGAFNALLKTLEEPPKNVIFILATTEPHKIPLTIISRTQRFDFKRISVRDSC 184

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           E +  I+        +   +EA   IA  + G  R A  +L    D A      ++T E 
Sbjct: 185 ERMAYIL----GQEKIEYQEEALTVIARAAEGGMRDALSIL----DQAISYGDDSVTVEN 236

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           A +    L   ++  D  D    ++I  N   G   +++I A   +    +EDLI
Sbjct: 237 AMSVTGSLTQ-ELVLDYFD----SIIQHNTEKGLSLLQSILAEGKDASRFVEDLI 286


>gi|307178105|gb|EFN66932.1| Spastin [Camponotus floridanus]
          Length = 711

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/204 (23%), Positives = 75/204 (36%), Gaps = 18/204 (8%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-------LFVGPPGLGKTTLAQVVAR 76
           P   E+  GQ  A   L+  +     R E    +       L  GPPG GKT LA+ VA 
Sbjct: 433 PVQWEDIAGQETAKQALQEMVILPSLRPELFTGLRTPARGLLLFGPPGNGKTLLARAVAT 492

Query: 77  ELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPA 128
           +    F S S   +           + AL     +    V+FIDE+  L    ++  + A
Sbjct: 493 QCHATFFSISAASLTSKYVGEGEKLVRALFAIARELQPSVIFIDEVDSLLSERKDNEHEA 552

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
               + + +V              R  ++AAT R   L      RF   + +   +++  
Sbjct: 553 SRRLKTEFLVEFDG---LPCNPEERVLVMAATNRPQELDEAALRRFTKRVYVTLPDLQTR 609

Query: 189 KTIVQRGAKLTGLAVTDEAACEIA 212
             ++QR        +T E   E+A
Sbjct: 610 IVLLQRLLAKHNDPLTPEELNEMA 633


>gi|312133496|ref|YP_004000835.1| dnax2 [Bifidobacterium longum subsp. longum BBMN68]
 gi|311772738|gb|ADQ02226.1| DnaX2 [Bifidobacterium longum subsp. longum BBMN68]
          Length = 948

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 59/282 (20%), Positives = 93/282 (32%), Gaps = 28/282 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     RP T E   GQ +    L   ++  K     L H  LF GP G GKT+ A+++A
Sbjct: 4   ALYRRYRPDTFEGVIGQDQVTVPLMRALDEGK-----LTHAYLFSGPRGCGKTSSARILA 58

Query: 76  RELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------P 127
           R +      TS P        DLA         DV+ ID      +     L       P
Sbjct: 59  RCVNCAKGPTSHPCGECESCKDLA--TGGPGSIDVVEIDAASHNGVDDARELRERAGFAP 116

Query: 128 AMEDFQLDLMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR---FGI 176
           A + +++ ++         G     + V+        I ATT    +   ++ R   +  
Sbjct: 117 ARDRYKIFILDEAHMVTQQGFNALLKIVEEPPEHVMFIFATTEPDKVIGTIRSRTHHYPF 176

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
            +         L+TI  +        V   A        R T  +  +L+    +     
Sbjct: 177 RLVPQEVMGPYLETICDKEGIKPEPGVLKLAMRAGGGSMRDTLSVLDQLMVGSVEGVITH 236

Query: 237 HAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
            A          AL+  A+D +  D        +I +   GG
Sbjct: 237 DAAVALLGFTPEALIGEAVDAV-IDHNGEALYGVIQKVVVGG 277


>gi|227828221|ref|YP_002830001.1| ATPase AAA [Sulfolobus islandicus M.14.25]
 gi|227830979|ref|YP_002832759.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus L.S.2.15]
 gi|229579858|ref|YP_002838257.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus
           Y.G.57.14]
 gi|229585449|ref|YP_002843951.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus M.16.27]
 gi|238620412|ref|YP_002915238.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus M.16.4]
 gi|284998468|ref|YP_003420236.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus L.D.8.5]
 gi|227457427|gb|ACP36114.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus L.S.2.15]
 gi|227460017|gb|ACP38703.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus M.14.25]
 gi|228010573|gb|ACP46335.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus
           Y.G.57.14]
 gi|228020499|gb|ACP55906.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus M.16.27]
 gi|238381482|gb|ACR42570.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus M.16.4]
 gi|284446364|gb|ADB87866.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus L.D.8.5]
          Length = 769

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 56/291 (19%), Positives = 101/291 (34%), Gaps = 31/291 (10%)

Query: 24  PR-TLEEFTGQVEACSNLKVFIEA--------AKARAEALDHVLFVGPPGLGKTTLAQVV 74
           PR T E+  G       ++  +E          +   E    +L  GPPG+GKT LA+ +
Sbjct: 187 PRVTYEDIGGMKNIIEKVRELVELPLRHPELFKRLGIEPPKGILLYGPPGVGKTLLAKAI 246

Query: 75  ARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILY 126
           A E    F S +GP I           L  +  + +     ++F+DEI  ++   +E++ 
Sbjct: 247 ANETDAYFTSINGPEIMSKFYGESEQRLREIFEDAKKHAPAIIFVDEIDAIAPKRDEVIG 306

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
                    L+            N     +IAAT R   +   L+   RF   I +   +
Sbjct: 307 EVERRVVAQLLT-----LMDGLENRGNVIVIAATNRPSAVDPALRRPGRFDREIEIPLPD 361

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            +    I+Q   +   L+   +      M    T      L+R            ++ R 
Sbjct: 362 KQGRLEILQIHTRNMPLSKDVDLEKLADMTHGYTGADLSALVREAAM-------NSLRRY 414

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDA 295
           +    L +  I     + ++++    I       P G+  I   + E +  
Sbjct: 415 LPKIDLNQDKIPPEILESMEVKMEDFINAFKEIVPSGLREIYIEVPEVKWT 465



 Score = 50.5 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 40/152 (26%), Positives = 62/152 (40%), Gaps = 14/152 (9%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLAALLTNLEDR--- 106
           E    +L  GPPG GKT LA+ VA E G NF +  GP I     G+    +  +  +   
Sbjct: 497 EPPKGILLFGPPGTGKTMLAKAVATESGANFIAVRGPEILSKWVGESEKAVREIFRKARM 556

Query: 107 ---DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
               V+F DEI  ++ I       + +    + +V +  +       L    +IAAT R 
Sbjct: 557 YAPAVIFFDEIDSIAPIR----GISYDSGVTERIVNQLLAEMDGIEKLENVVVIAATNRP 612

Query: 164 GLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQ 193
            +L   L    RF   I +   +      I++
Sbjct: 613 DILDPALLRPGRFEKLIYVPPPDKRARIEILK 644


>gi|190406014|gb|EDV09281.1| ribosome biogenesis ATPase RIX7 [Saccharomyces cerevisiae RM11-1a]
 gi|259147956|emb|CAY81205.1| Rix7p [Saccharomyces cerevisiae EC1118]
 gi|323303931|gb|EGA57711.1| Rix7p [Saccharomyces cerevisiae FostersB]
          Length = 837

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 52/219 (23%), Positives = 81/219 (36%), Gaps = 18/219 (8%)

Query: 28  EEFTGQVEACSNLKVFIEAA--KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRST 85
           ++   Q+     L +           E    VL  GPPG GKT++A  +A EL V F S 
Sbjct: 211 DDVVAQLMELIGLPILHPEIFLSTGVEPPRGVLLHGPPGCGKTSIANALAGELQVPFISI 270

Query: 86  SGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           S P +          K  DL     +L    ++F DEI  ++   +      ME   +  
Sbjct: 271 SAPSVVSGMSGESEKKIRDLFDEARSLAP-CLVFFDEIDAITPKRDGGAQREMERRIVAQ 329

Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQR 194
           ++         K N     +I AT R   L   L+   RF   I LN         I+++
Sbjct: 330 LLTSMDELTMEKTNGKPVIIIGATNRPDSLDAALRRAGRFDREICLNVPNEVSRLHILKK 389

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
            +    +      A + A  ++ TP   G  L+ +   A
Sbjct: 390 MSDNLKID----GAIDFAKLAKLTPGFVGADLKALVTAA 424



 Score = 49.7 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 79/225 (35%), Gaps = 16/225 (7%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLT 101
           K    A   VL  GPPG GKT LA+ VA E   NF S  GP +           +  + T
Sbjct: 561 KVGISAPGGVLLWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESERSIRQVFT 620

Query: 102 NLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA 159
                   V+F DE+  L     +          ++ ++ E       +       +I A
Sbjct: 621 RARASVPCVIFFDELDALVPRR-DTSLSESSSRVVNTLLTELDGLNDRRG----IFVIGA 675

Query: 160 TTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLA-VTDEAACEIAMRSR 216
           T R  ++   +    R    + +     E+   I++   K  G    +D    EI    +
Sbjct: 676 TNRPDMIDPAMLRPGRLDKTLFIELPNTEEKLDIIKTLTKSHGTPLSSDVDFEEIIRNEK 735

Query: 217 GTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
                   L   VR+ + +A  +   +     ++L   +DK   D
Sbjct: 736 CNNFSGADLAALVRESSVLALKRKFFQSEEIQSVLDNDLDKEFED 780


>gi|148378038|ref|YP_001252579.1| DNA polymerase III, gamma and tau subunits [Clostridium botulinum A
           str. ATCC 3502]
 gi|153932975|ref|YP_001382437.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum A
           str. ATCC 19397]
 gi|153935315|ref|YP_001385990.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum A
           str. Hall]
 gi|148287522|emb|CAL81584.1| DNA polymerase III subunit gamma/tau [Clostridium botulinum A str.
           ATCC 3502]
 gi|152929019|gb|ABS34519.1| DNA polymerase III, gamma and tau subunit [Clostridium botulinum A
           str. ATCC 19397]
 gi|152931229|gb|ABS36728.1| DNA polymerase III, gamma and tau subunit [Clostridium botulinum A
           str. Hall]
          Length = 541

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 82/225 (36%), Gaps = 29/225 (12%)

Query: 23  RPRTLEEFTGQVEACSNLK-VFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           RPRT +E  GQ      LK   IE   A A      LF G  G GKT+ A+++++ +   
Sbjct: 11  RPRTFKEVVGQKHITVTLKNQVIEKRIAHA-----YLFCGTRGTGKTSTAKILSKAVNC- 64

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI--------IVEEILYPAMEDFQ 133
                 P   +  +   +   +    ++ + E+   S         ++E + YP  E   
Sbjct: 65  ----LNPKDGEPCNECEICNKINSGTLMDVIEMDAASKRKLEDIKEVIENVKYPPQEGKN 120

Query: 134 LDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
              ++ E             ++++   S    I ATT    L   +  R           
Sbjct: 121 KVYIMDEVHMLTQEAVNAFLKTLEEPPSNVIFILATTDPQKLPITILSRCQ-RFDFRRIR 179

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
            E++   ++      G+   D++   IA  S G  R A  +L +V
Sbjct: 180 NEEIFERLRAIVSEQGIYADDKSLNLIARMSDGAMRDALSILDQV 224


>gi|139436961|ref|ZP_01771121.1| Hypothetical protein COLAER_00094 [Collinsella aerofaciens ATCC
           25986]
 gi|133776608|gb|EBA40428.1| Hypothetical protein COLAER_00094 [Collinsella aerofaciens ATCC
           25986]
          Length = 635

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 59/230 (25%), Positives = 92/230 (40%), Gaps = 28/230 (12%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ EA  +LK  ++  +         A+     L VGPPG GKT LA+ VA E 
Sbjct: 185 TFKDVAGQEEAKESLKEVVDFLEKPQRYEEIGAKLPRGALLVGPPGTGKTLLAKAVAGEA 244

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG           A  +  L    +++   ++FIDEI  +    +   +   +
Sbjct: 245 GVPFFSISGSEFVEMFVGRGAAKVRDLFKQAKEKAPCIVFIDEIDTIGKKRDGGGFSGND 304

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E     + K       ++AAT R   L   L    RF   I +   ++ 
Sbjct: 305 EREQTLNQLLTEMDGFDNHKG----IVVLAATNRPDSLDPALLRPGRFDRRIPVELPDLT 360

Query: 187 DLKTIVQRGAK-LTGLAVTDEAACEIAMRSRGTPRIAG----RLLRRVRD 231
             K I++  AK +      D  A   A        +A       LR VR+
Sbjct: 361 GRKNILELHAKSVKTQPPIDLTAIARATPGASGADLANIINEGALRAVRE 410


>gi|125536092|gb|EAY82580.1| hypothetical protein OsI_37801 [Oryza sativa Indica Group]
          Length = 1174

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 81/243 (33%), Gaps = 32/243 (13%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M DR  L  +            RP+   E  GQ    +     +  A  R +     LF 
Sbjct: 396 MADRRSLSQK-----------YRPKLFSEIVGQ-HIVAQ---SLSNAITREKIAPAYLFQ 440

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           GP G GKT+ A++ +  L       + P      +    L+      ++ +D  +R SI 
Sbjct: 441 GPRGTGKTSTARIFSMGLSCLAPGENKP-CGICKECTDFLSGNGTN-LIEVDASNRKSIN 498

Query: 121 VEEILY-----PAMEDFQLDLMVGEGPSARS---------VKINLSRFTLIAATTRVGLL 166
             + L       A        +V E     S         +   L R   +  T     L
Sbjct: 499 RIKNLLENIPPSATSSRYKLFVVDECHMVSSKLWSAFMKFLDEPLPRVVFVFITIDPDNL 558

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
              +  R    +     +I+ +   ++R      L V   A   IA+ S G+ R A  +L
Sbjct: 559 PRAVISRCQKYVFSKIKDIDIVCR-LRRICVKENLDVELAALDLIALNSDGSLRDAETML 617

Query: 227 RRV 229
            ++
Sbjct: 618 DQL 620


>gi|328770250|gb|EGF80292.1| hypothetical protein BATDEDRAFT_1279 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 464

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 55/237 (23%), Positives = 90/237 (37%), Gaps = 25/237 (10%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRS 84
           + LEE          LK      +   +    VL  GPPG GKT LA+ +A E GV F  
Sbjct: 50  QELEEIV--QFLKEPLKFM----ELGGKLPKGVLLYGPPGTGKTHLARAIAGEAGVPFFQ 103

Query: 85  TSGPVIA------KAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
            SG           A  +  L    + R   ++FIDE+  +           M      L
Sbjct: 104 MSGSEFDELYVGVGARRVRELFAAAKKRAPCIVFIDELDAVGSKRSTKDQSYMRQTLNQL 163

Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQR 194
           +V     + +  + L     IAAT     L   L    RF   + +   +++    I+  
Sbjct: 164 LVELDGFSPTEGVIL-----IAATNTPDSLDKALVRPGRFDRLVPVPLPDVKGRTQIL-- 216

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
             K+    V  +   + ++ +RGTP  +G  L  + + A +  +K  ++ +  A L 
Sbjct: 217 --KVHMRGVQMDRGVDASIIARGTPGFSGADLANIINHAAIKASKDSSKYVTMADLE 271


>gi|168333587|ref|ZP_02691852.1| DNA polymerase III, subunits gamma and tau [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 522

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 72/227 (31%), Gaps = 21/227 (9%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
              RP+   +  GQ      LK  I+  +         LF G  G GKTT A++ AR + 
Sbjct: 7   RKYRPQKFSDMVGQEHITKTLKNQIKLNRIAHAY----LFTGSRGTGKTTAAKIFARAIN 62

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQL 134
                   P   K      +        ++ +D      +  +  I EE+LY        
Sbjct: 63  CKNSVDGKP-CEKCVVCKEIAEGAFVN-IIELDAASHNGVDDIRQINEEVLYTPAVGVYK 120

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             ++ E             ++++        I ATT    +   +  R            
Sbjct: 121 VYIIDEVHMLSPAAFNAMLKTLEEPPPYVVFILATTDPQKIPATVLSRCQ-RFDFRRIST 179

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
            D+   +    +   + +  EA   IA  + G  R A  +L +   F
Sbjct: 180 SDICDCLLDYMQRENIEIEKEAVELIARLADGGMRDALSILEQCISF 226


>gi|160936876|ref|ZP_02084240.1| hypothetical protein CLOBOL_01764 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440066|gb|EDP17813.1| hypothetical protein CLOBOL_01764 [Clostridium bolteae ATCC
           BAA-613]
          Length = 560

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 85/225 (37%), Gaps = 23/225 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP + E+  GQ      LK  I +     E + H  LF G  G GKT++A++ AR +   
Sbjct: 11  RPVSFEDVKGQDPIVQTLKNQITS-----ERIGHAYLFCGTRGTGKTSIAKIFARAVNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDL 136
                 P   +     ++ +      V+ ID      +  +  I E++ YP  E      
Sbjct: 66  HPVDGSP-CNECPTCRSIQSGSSMN-VVEIDAASNNGVENIRDIREQVQYPPTEGRYRVY 123

Query: 137 MVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ++ E             ++++   S    I ATT V  +   +  R           +E 
Sbjct: 124 IIDEVHMLSIGAFNALLKTLEEPPSYVIFILATTEVHKIPITILSRCQRYDFKRI-SLET 182

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           +   ++   +   + V D+A   +A  + G+ R A  LL +   F
Sbjct: 183 IANRLRELTQAEQIQVEDKALLYVAKAADGSLRDALSLLDQCVAF 227


>gi|154313201|ref|XP_001555927.1| hypothetical protein BC1G_05602 [Botryotinia fuckeliana B05.10]
 gi|150849687|gb|EDN24880.1| hypothetical protein BC1G_05602 [Botryotinia fuckeliana B05.10]
          Length = 390

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 74/225 (32%), Gaps = 14/225 (6%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
                   +   RP TLE+ +G  +  + +  F++  +     L H+LF GPPG GKT+ 
Sbjct: 41  EAEDSLPWVEKYRPDTLEDVSGHQDILATINKFVDTNR-----LPHLLFYGPPGTGKTST 95

Query: 71  AQVVAR------ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
              +AR       +       +         +   +        +F  +    S      
Sbjct: 96  ILALARRIYGSKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFASKSSSTSPGA--Y 153

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
               +++        +    R ++   +             L+  L  R     R +  +
Sbjct: 154 KLIILDEADAMTSTAQMALRRVMEKYTANTRFCVIANYTHKLSPALLSRC-TRFRFSPLK 212

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
             D++ +V +      + +  EA   +   S+G  R A  +L+  
Sbjct: 213 EADIRVLVDKVIAEENVQINAEATDALVRLSKGDMRRALNVLQAC 257


>gi|186475716|ref|YP_001857186.1| DNA polymerase III subunits gamma and tau [Burkholderia phymatum
           STM815]
 gi|184192175|gb|ACC70140.1| DNA polymerase III, subunits gamma and tau [Burkholderia phymatum
           STM815]
          Length = 793

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/253 (18%), Positives = 92/253 (36%), Gaps = 28/253 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+      GQ      L   ++  +     L H  LF G  G+GKTTL+++ A+ L   
Sbjct: 11  RPKDFASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAMEDFQL 134
              TS P     G   A     E R V +++        +  ++ ++E  +Y  ++    
Sbjct: 66  TGVTSTP----CGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             M+ E             ++++        I ATT    +   +  R  +   L     
Sbjct: 122 VYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPA 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
             + + ++R      +A   +A   +A  + G+ R A  L  +   ++     +   R  
Sbjct: 181 GHIVSHLERILGEENIAHEAQALRLLARAADGSMRDALSLTDQAIAYSANQVTEEAVR-G 239

Query: 246 ADAALLRLAIDKM 258
              AL +  + ++
Sbjct: 240 MLGALDQSYLIRL 252


>gi|310642516|ref|YP_003947274.1| vesicle-fusing atpase [Paenibacillus polymyxa SC2]
 gi|309247466|gb|ADO57033.1| Vesicle-fusing ATPase [Paenibacillus polymyxa SC2]
          Length = 500

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 60/267 (22%), Positives = 97/267 (36%), Gaps = 36/267 (13%)

Query: 26  TLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T EE  GQ  A   L+  +       E +K     L  VL  GPPG GKT +A+  A   
Sbjct: 69  TFEEIGGQESAKQELREALDFLNRHDEISKFGIRPLKGVLLTGPPGTGKTLMAKAAAHYT 128

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNL--------EDRDVLFIDEIHRLSIIV--- 121
              F + SG           AG +  L            ++  ++FIDEI  +       
Sbjct: 129 NSVFVAASGSEFVEMYVGVGAGRVRELFREARTRAAKEKKENAIIFIDEIDVIGGKREGG 188

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIR 179
           ++  Y    +  L  M G          +  R  LIAAT R  +L + L    RF   I+
Sbjct: 189 QQREYDQTLNQLLTEMDG------IYSADTPRILLIAATNRKEMLDSALTRPGRFDRHIQ 242

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           ++  + +    I++  AK   +         +   +  +   +G  L  V + A +   +
Sbjct: 243 VDLPDKKGRLHILKIHAKNKPIQEDAN----LDKIAEESYGFSGAQLESVMNEAAIYAMR 298

Query: 240 TITREIADAALLRLAIDKMGFDQLDLR 266
              + IA + L       M  ++ D  
Sbjct: 299 QDRQMIAQSHLSMAIDKVMMGEKTDRE 325


>gi|254173022|ref|ZP_04879696.1| Replication factor C family protein [Thermococcus sp. AM4]
 gi|214033178|gb|EEB74006.1| Replication factor C family protein [Thermococcus sp. AM4]
          Length = 870

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/136 (25%), Positives = 57/136 (41%), Gaps = 25/136 (18%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK--TTLAQ 72
           E   +   RP+ L++  GQ      LK +     A+  ++ H+LF GPPG+GK  T  A+
Sbjct: 12  EKPWVEKYRPQRLDDIVGQEHIVKRLKHY-----AKTGSMPHLLFAGPPGVGKCLTGDAK 66

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTN-------LEDRDVLFIDEIHRLSIIVEEIL 125
           VV               +   G+L   L+N       ++   VL +DE  +L  +  E +
Sbjct: 67  VVIN-----------GELTTIGELVERLSNGRFGPTPVKGLTVLGVDEDGKLRELPVEYV 115

Query: 126 YPAMEDFQLDLMVGEG 141
           Y    D  + +    G
Sbjct: 116 YKDRTDELVRIKTRLG 131



 Score = 41.2 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 36/182 (19%), Positives = 59/182 (32%), Gaps = 32/182 (17%)

Query: 62  PPGLGKTTLAQVVARE-----LGVNFRSTSGPVIAKAGDLAALLTNLED--------RDV 108
           P  L  TT A  +ARE        NF   +         +   +               +
Sbjct: 594 PTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPVAGASFKI 653

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +F+DE   L+   ++ L   ME F                   +    I +      +  
Sbjct: 654 IFLDEADALTQDAQQALRRTMEMFS------------------NNVRFILSCNYSSKIIE 695

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
           P+Q R  I  R      ED+   ++  A+  GL +T+E    I   + G  R A  +L+ 
Sbjct: 696 PIQSRCAI-FRFRPLNDEDIAKRIKYIAEQEGLELTEEGLQAILYVAEGDLRRAINVLQA 754

Query: 229 VR 230
             
Sbjct: 755 AA 756


>gi|158298980|ref|XP_319111.4| AGAP009973-PA [Anopheles gambiae str. PEST]
 gi|157014148|gb|EAA13918.4| AGAP009973-PA [Anopheles gambiae str. PEST]
          Length = 570

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 53/244 (21%), Positives = 90/244 (36%), Gaps = 22/244 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T E+  G  EA   LK  +E  K          +    VL VGPPG GKT LA+ VA E 
Sbjct: 127 TFEDVKGCDEAKQELKEVVEFLKNPGKFSNLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 186

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F   +GP          A  +  L    ++R   V+FIDEI  +       +     
Sbjct: 187 GVPFFHAAGPEFDEVLVGQGARRVRDLFKAAKERAPCVIFIDEIDSVGAKRTNSVLHPYA 246

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
           +  ++ ++ E    +  +       ++ AT R   L   L    RF + + +   +    
Sbjct: 247 NQTINQLLSEMDGFQQNEG----VIVLGATNRRDDLDQALLRPGRFDVEVVVPTPDFTGR 302

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           K I+            +         +  T      ++ +    A +  A+T++ +  + 
Sbjct: 303 KEILTYYLGKILSREINIDQLARGT-TGFTGADIENMVNQAALRAAIDGAETVSMKHLEN 361

Query: 249 ALLR 252
           A  +
Sbjct: 362 ARDK 365


>gi|9453896|dbj|BAB03291.1| replication factor C small subunit precursor [Pyrococcus furiosus
          DSM 3638]
          Length = 59

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 5/53 (9%)

Query: 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
          E   +   RP+ L++  GQ      LK +++       ++ H+LF GPPG+GK
Sbjct: 12 EKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTG-----SMPHLLFAGPPGVGK 59


>gi|322818936|gb|EFZ26208.1| replication factor C, subunit 3, putative [Trypanosoma cruzi]
          Length = 355

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/236 (18%), Positives = 80/236 (33%), Gaps = 19/236 (8%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP TL+E     +  S  +  +++       L H+LF GPPG GKTT  +  A 
Sbjct: 19  PWVEKYRPVTLDEVVAHEDILSTTRRLMDSG-----NLPHLLFYGPPGTGKTTTIKACAY 73

Query: 77  ELGVNFRSTSGPVIAKAGDLAAL-LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
            L    R  +  +   A D   + +   + R+       +  S        P +  F+L 
Sbjct: 74  YLFGKDRIRANVLEMNASDDRGIDVVRQQVREFASTSSFYFASTPAA----PTIAAFKLV 129

Query: 136 LMVGEGPSA--------RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ++      +        R ++              +  +   LQ R     R    +   
Sbjct: 130 ILDEADQMSGDAQAALRRIIEKYTKNVRFCILCNHINKIIPALQSRC-TRFRFAPVKKSA 188

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           + + ++  A+  G+  TDE        S G  R     L+     A     +++ R
Sbjct: 189 MLSRLKFVAQEEGVRFTDEGLVAAFRLSNGDLRRCLNTLQASAMSAGEITEESVYR 244


>gi|291455830|ref|ZP_06595220.1| DNA polymerase III subunit gamma/tau [Bifidobacterium breve DSM
           20213]
 gi|291382758|gb|EFE90276.1| DNA polymerase III subunit gamma/tau [Bifidobacterium breve DSM
           20213]
          Length = 907

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 59/282 (20%), Positives = 95/282 (33%), Gaps = 28/282 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     RP T E   GQ +    L   ++  +     L H  LF GP G GKT+ A+++A
Sbjct: 27  ALYRRYRPDTFEGVIGQDQVTVPLMRALDEGR-----LTHAYLFSGPRGCGKTSSARILA 81

Query: 76  RELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------P 127
           R +      TS P        DLA         DV+ ID      +     L       P
Sbjct: 82  RCVNCAKGPTSHPCGECESCKDLA--TGGPGSIDVVEIDAASHNGVDDARELRERAGFAP 139

Query: 128 AMEDFQLDLMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR---FGI 176
           A + +++ ++         G     + V+        I ATT    +   ++ R   +  
Sbjct: 140 ARDRYKIFILDEAHMVTQQGFNALLKIVEEPPEHVMFIFATTEPDKVIGTIRSRTHHYPF 199

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
            +         L+TI ++ +      V   A        R T  +  +L+    +     
Sbjct: 200 RLVPQEVMGPYLETICEKESIKPEPGVLKLAMRAGGGSMRDTLSVLDQLMVGSVEGVITH 259

Query: 237 HAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
            A          AL+  AID +  D        +I +   GG
Sbjct: 260 DAAVALLGFTPEALIGEAIDAV-IDHNGEALYGVIQKVVVGG 300


>gi|261349970|ref|ZP_05975387.1| replication factor C large subunit [Methanobrevibacter smithii DSM
           2374]
 gi|288860753|gb|EFC93051.1| replication factor C large subunit [Methanobrevibacter smithii DSM
           2374]
          Length = 492

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/218 (19%), Positives = 84/218 (38%), Gaps = 10/218 (4%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
                RP+TL+E  G  +  + ++ +++  KA       +L VGPPG+GKTTLAQ +ARE
Sbjct: 3   WTDKYRPKTLDEVVGNNKEKALIQKWVDNWKA-GNPQKPLLLVGPPGIGKTTLAQAIARE 61

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
               +   +         + + +        LF D+   L +   + ++   +   +  +
Sbjct: 62  FS-EYIELNASDKRSQDVIKSTIGESSSSKSLFGDDYKLLILDEVDGIHGTNDRGGVRAI 120

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
                 A+   I ++                 L+ +  +           +  ++++ A 
Sbjct: 121 GDIIKKAKHPMILIAN-------DFYSKRIASLKTKCDVLKMSKVRSP-SINKLLKQIAI 172

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
             G+     A  E+A +S G  R A    + + +  EV
Sbjct: 173 NEGIKANPAALKELAKKSNGDMRSAINTFQALANQNEV 210


>gi|219870298|ref|YP_002474673.1| DNA polymerase III subunits gamma and tau [Haemophilus parasuis
           SH0165]
 gi|219690502|gb|ACL31725.1| DNA polymerase III subunits gamma and tau [Haemophilus parasuis
           SH0165]
          Length = 670

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/245 (19%), Positives = 78/245 (31%), Gaps = 55/245 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+   E  GQ    S L+  +   +     L H  LF G  G+GKT++A++ A+ L   
Sbjct: 11  RPQRFSEVVGQQHVLSALENGLREGR-----LHHAYLFSGTRGVGKTSIARLFAKGLNCE 65

Query: 82  F------------------------RSTSGPVIAKAGDLAALLTNLEDRD------VLFI 111
                                             K  D   LL N++ +       V  I
Sbjct: 66  TGISADPCGQCANCKAIEEGRFIDLIEIDAASRTKVEDTRELLDNVQYKPTVGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSRHSFNALLKTLEE------------------PPEYVKFLLATTDPQKLPITIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L   E   ++  ++       +     A  ++A  ++G+ R A  L  +   
Sbjct: 168 SRC-MQFHLRALEQSQIQQHLEFILTQEQIPYELSALAKLAKAAQGSIRDALSLTDQAIA 226

Query: 232 FAEVA 236
            + V 
Sbjct: 227 VSNVN 231


>gi|148643237|ref|YP_001273750.1| replication factor C large subunit [Methanobrevibacter smithii ATCC
           35061]
 gi|158513781|sp|A5UMF4|RFCL_METS3 RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|148552254|gb|ABQ87382.1| replication factor C, large subunit, RfcL [Methanobrevibacter
           smithii ATCC 35061]
          Length = 492

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/218 (19%), Positives = 84/218 (38%), Gaps = 10/218 (4%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
                RP+TL+E  G  +  + ++ +++  KA       +L VGPPG+GKTTLAQ +ARE
Sbjct: 3   WTDKYRPKTLDEVVGNNKEKALIQKWVDNWKA-GNPQKPLLLVGPPGIGKTTLAQAIARE 61

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
               +   +         + + +        LF D+   L +   + ++   +   +  +
Sbjct: 62  FS-EYIELNASDKRSQDVIKSTIGESSSSKSLFGDDYKLLILDEVDGIHGTNDRGGVRAI 120

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
                 A+   I ++                 L+ +  +           +  ++++ A 
Sbjct: 121 GDIIKKAKHPMILIAN-------DFYSKRIASLKTKCDVLKMSKVRSP-SINKLLKQIAI 172

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
             G+     A  E+A +S G  R A    + + +  EV
Sbjct: 173 NEGIKANPAALKELAKKSNGDMRSAINTFQALANQNEV 210


>gi|170718500|ref|YP_001783712.1| DNA polymerase III subunits gamma/tau [Haemophilus somnus 2336]
 gi|168826629|gb|ACA32000.1| DNA polymerase III, subunits gamma and tau [Haemophilus somnus
           2336]
          Length = 667

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 52/305 (17%), Positives = 93/305 (30%), Gaps = 64/305 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGV- 80
           RP+T  E  GQ    + L     +       L H  LF G  G+GKT++A++ A+ L   
Sbjct: 11  RPKTFSEVVGQEHILTAL-----SNGLCENRLHHAYLFSGTRGVGKTSIARLFAKGLNCI 65

Query: 81  -----------------------NFRSTSGPVIAKAGDLAALLTNLEDRD------VLFI 111
                                  +          K  D   LL N++ +       V  I
Sbjct: 66  RGVTAEPCGECEHCKAIEEGRFIDLIEIDAASRTKVEDTRELLDNVQYKPTQGRYKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSRHSFNALLKTLEE------------------PPEYVKFLLATTDPQKLPITIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L     + +   ++   +   +     A  ++A  ++G+ R +  L     D
Sbjct: 168 SRC-MQFHLKALSEKQIAQHLEFILQQENIPFEYPALEKLATAAQGSIRDSLSL----TD 222

Query: 232 FAEVAHAKTITREIADAALLRLAIDK-----MGFDQLDLRYLTMIARNFGGGPVGIETIS 286
            A       ++ +     L  L  ++         Q +   L    +         + + 
Sbjct: 223 QAIAMGNANVSLDTVSIMLGLLDDNQPIDILYALQQGNGEMLMKAIQAVAEKGADWDKLL 282

Query: 287 AGLSE 291
             L+E
Sbjct: 283 VTLAE 287


>gi|71065614|ref|YP_264341.1| DNA polymerase III, gamma subunit / DNA polymerase III, tau subunit
           [Psychrobacter arcticus 273-4]
 gi|71038599|gb|AAZ18907.1| DNA polymerase III, gamma subunit / DNA polymerase III, tau subunit
           [Psychrobacter arcticus 273-4]
          Length = 631

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/245 (19%), Positives = 82/245 (33%), Gaps = 23/245 (9%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLA 71
            Q        RP+   E  GQ      L   I+        L H  LF G  G+GKTT+A
Sbjct: 3   QQYQVLARKYRPKNFHELIGQTHVSQALINAID-----YNRLHHAYLFTGTRGVGKTTIA 57

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY----- 126
           +++++ L  +   TS P      D    +      D++ ID   R  +     L      
Sbjct: 58  RILSKCLNCDTGITSTP--CGVCDNCVAIDQGRFIDLIEIDAASRTKVEDTRELLDNVPY 115

Query: 127 -PAMEDFQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
            P+   +++ L+               ++++        + ATT    L   +  R  + 
Sbjct: 116 APSQGRYKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLLATTDPQKLPITIISRC-LQ 174

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
             L       L   +        +  T  A  ++A  ++G+ R A  L  +   F + A 
Sbjct: 175 FVLRPLSQSLLSEHLANVLTQEQVGYTQPALWQLASAAKGSVRDALSLTDQAIAFGQGAL 234

Query: 238 AKTIT 242
                
Sbjct: 235 DDVTV 239


>gi|296157765|ref|ZP_06840599.1| DNA polymerase III, subunits gamma and tau [Burkholderia sp. Ch1-1]
 gi|295892011|gb|EFG71795.1| DNA polymerase III, subunits gamma and tau [Burkholderia sp. Ch1-1]
          Length = 966

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 52/271 (19%), Positives = 94/271 (34%), Gaps = 37/271 (13%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+      GQ      L   ++  +     L H  LF G  G+GKTTL+++ A+ L   
Sbjct: 11  RPKDFASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAMEDFQL 134
              TS P     G   A     E R V +++        +  ++ ++E  +Y  ++    
Sbjct: 66  TGVTSAP----CGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             M+ E             ++++   +    I ATT    +   +  R  +   L     
Sbjct: 122 VYMIDEVHMLTNHAFNAMLKTLEEPPAHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPA 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
             + + ++       +    +A   +A  + G+ R A  L     D A    A  +  E 
Sbjct: 181 GHIVSHLEHILGEEKVPYDVQALRLLARAADGSMRDALSL----TDQAIAYSANQVNEEA 236

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFG 276
               L  L    +      +R L  +A   G
Sbjct: 237 VRGMLGALDQSYL------IRLLDALADGDG 261


>gi|71756209|ref|XP_829019.1| replication factor C subunit 4 [Trypanosoma brucei TREU927]
 gi|70834405|gb|EAN79907.1| replication factor C, subunit 4, putative [Trypanosoma brucei]
 gi|261334959|emb|CBH17953.1| replication factor C, subunit 4, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 341

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/245 (18%), Positives = 80/245 (32%), Gaps = 57/245 (23%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP ++E+  G  +A + L+V      AR   L ++L  GPPG GKTT    +AR
Sbjct: 7   PWVEKYRPMSMEDIVGNADAVARLQVI-----AREGNLPNLLLCGPPGTGKTTSMLCLAR 61

Query: 77  ---------------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDR--------- 106
                                EL  +       V  K    A     L  R         
Sbjct: 62  SLLSDPDGGGSNNNALKDAVLELNASDDRGLDVVREKIKLFAQTKKTLPQRVGDSNNRKI 121

Query: 107 ---DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
               ++ +DE   ++   ++ L                   R+++++ S      A    
Sbjct: 122 NLHKIVILDEADSMTPAAQQALR------------------RTIELHSSTTRFAFACNNS 163

Query: 164 GLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAG 223
             +  P+Q R  +         + L+  +    +   +A TD+    +   + G  R A 
Sbjct: 164 HKIIEPIQSRCAVVRFRKLSHTDILRR-LMYIIQQENVAYTDDGLEALLYLADGDLRSAV 222

Query: 224 RLLRR 228
             L+ 
Sbjct: 223 NALQA 227


>gi|67538836|ref|XP_663192.1| hypothetical protein AN5588.2 [Aspergillus nidulans FGSC A4]
 gi|40743041|gb|EAA62231.1| hypothetical protein AN5588.2 [Aspergillus nidulans FGSC A4]
          Length = 802

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 88/247 (35%), Gaps = 22/247 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G  EA   L+  +E        +    +    VL VGPPG GKT LA+ VA E 
Sbjct: 331 RFSDVHGCDEAKDELQELVEFLLNPERFSSLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 390

Query: 79  GVNFRSTSGPVIA------KAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F   SG           A  +  L      +   ++FIDE+  +     E    A  
Sbjct: 391 GVPFFYMSGSEFDEVYVGVGAKRVRELFNQARSKSPAIIFIDELDAIGAKRNER-DAAYV 449

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
              L+ ++ E               ++AAT    LL   L    RF   + ++  ++   
Sbjct: 450 KQTLNQLLTELDGFSQSTG----VIILAATNYPELLDKALTRPGRFDRKVVVDLPDVRGR 505

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             I++   K   ++   + A      S  +      L+ +   FA       +T +  D 
Sbjct: 506 MDILKHHMKNVQISTDVDVAVIARGTSGFSGADLENLVNQAAIFASRNKQSKVTPKDFDY 565

Query: 249 ALLRLAI 255
           A  ++ +
Sbjct: 566 AKDKIIM 572


>gi|323475288|gb|ADX85894.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus REY15A]
 gi|323478013|gb|ADX83251.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus HVE10/4]
          Length = 769

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 56/291 (19%), Positives = 101/291 (34%), Gaps = 31/291 (10%)

Query: 24  PR-TLEEFTGQVEACSNLKVFIEA--------AKARAEALDHVLFVGPPGLGKTTLAQVV 74
           PR T E+  G       ++  +E          +   E    +L  GPPG+GKT LA+ +
Sbjct: 187 PRVTYEDIGGMKNIIEKVRELVELPLRHPELFKRLGIEPPKGILLYGPPGVGKTLLAKAI 246

Query: 75  ARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILY 126
           A E    F S +GP I           L  +  + +     ++F+DEI  ++   +E++ 
Sbjct: 247 ANETDAYFTSINGPEIMSKFYGESEQRLREIFEDAKKHAPAIIFVDEIDAIAPKRDEVIG 306

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
                    L+            N     +IAAT R   +   L+   RF   I +   +
Sbjct: 307 EVERRVVAQLLT-----LMDGLENRGNVIVIAATNRPSAVDPALRRPGRFDREIEIPLPD 361

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            +    I+Q   +   L+   +      M    T      L+R            ++ R 
Sbjct: 362 KQGRLEILQIHTRNMPLSKDVDLEKLADMTHGYTGADLSALVREAAM-------NSLRRY 414

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDA 295
           +    L +  I     + ++++    I       P G+  I   + E +  
Sbjct: 415 LPKIDLNQDKIPPEILESMEVKMEDFINAFKEIVPSGLREIYIEVPEVKWT 465



 Score = 50.5 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 40/152 (26%), Positives = 62/152 (40%), Gaps = 14/152 (9%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLAALLTNLEDR--- 106
           E    +L  GPPG GKT LA+ VA E G NF +  GP I     G+    +  +  +   
Sbjct: 497 EPPKGILLFGPPGTGKTMLAKAVATESGANFIAVRGPEILSKWVGESEKAVREIFRKARM 556

Query: 107 ---DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
               V+F DEI  ++ I       + +    + +V +  +       L    +IAAT R 
Sbjct: 557 YAPAVIFFDEIDSIAPIR----GISYDSGVTERIVNQLLAEMDGIEKLENVVVIAATNRP 612

Query: 164 GLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQ 193
            +L   L    RF   I +   +      I++
Sbjct: 613 DILDPALLRPGRFEKLIYVPPPDRRARIEILK 644


>gi|226479998|emb|CAX73295.1| hypothetical protein [Schistosoma japonicum]
          Length = 364

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 51/240 (21%), Positives = 82/240 (34%), Gaps = 51/240 (21%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+T++E   Q E  S L+  I         L ++LF GPPG GKT+L   +AR
Sbjct: 26  PWVEKYRPKTIDEVAYQTEVVSVLRRCI-----GGSDLPNLLFYGPPGTGKTSLILALAR 80

Query: 77  ------------ELGVNFRSTSGPVIAKAGDLAAL---------------LTNLEDRDVL 109
                       EL  +       +  K    A +                TN+    ++
Sbjct: 81  QLFGPLYSERVLELNASDERGIVVIREKVKAFAHVAVSSSGSNTNSSGSSSTNIPPYKLI 140

Query: 110 FIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
            +DE   ++   +  L   ME              R+ +  L           V  +  P
Sbjct: 141 ILDEADSMTAPAQAALRRTME-----------TEMRTTRFCL-------TCNYVTRIIEP 182

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           +  R     R    + E  +  ++  A    L+VTDE    +    RG  R    +L+ V
Sbjct: 183 ITSRCA-KFRFRPLDNEIARARLRYIADAENLSVTDETLDHLLSLCRGDLRQGITMLQCV 241


>gi|170033703|ref|XP_001844716.1| cell division protease ftsH [Culex quinquefasciatus]
 gi|167874684|gb|EDS38067.1| cell division protease ftsH [Culex quinquefasciatus]
          Length = 757

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 55/245 (22%), Positives = 93/245 (37%), Gaps = 24/245 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T E+  G  EA   LK  +E  K          +    VL VGPPG GKT LA+ VA E 
Sbjct: 313 TFEDVKGCDEAKQELKEVVEFLKNPDKFSNLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 372

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F   +GP          A  +  L    ++R   V+FIDEI  +       +     
Sbjct: 373 GVPFFHAAGPEFDEVLVGQGARRVRDLFKAAKERAPCVIFIDEIDSVGAKRTNSVLHPYA 432

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
           +  ++ ++ E    +  +       ++ AT R   L   L    RF + + +   +    
Sbjct: 433 NQTINQLLSEMDGFQQNEG----VIVLGATNRRDDLDQALLRPGRFDVEVVVPTPDFTGR 488

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAM-RSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           K I+        +   D    ++A   +  T      ++ +    A +  A+T+  +  +
Sbjct: 489 KEILTHYLSK--VLSKDINIDQLARGTTGFTGADIENMVNQAALRAAIDGAETVGMKHLE 546

Query: 248 AALLR 252
            A  +
Sbjct: 547 NARDK 551


>gi|51474033|ref|YP_067791.1| DNA polymerase III subunits gamma and tau [Rickettsia typhi str.
           Wilmington]
 gi|51460345|gb|AAU04308.1| DNA nucleotidyltransferase (DNA-directed) [Rickettsia typhi str.
           Wilmington]
          Length = 400

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 86/244 (35%), Gaps = 21/244 (8%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           +L  + +Q        RP    E  GQ      L   I   +         L  G  G+G
Sbjct: 1   MLENSSNQYIPFARKYRPNNFTELQGQEVLVKILSYTILNDRLVGGY----LLTGIRGVG 56

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLT--NLEDRDVLFIDEIHRLS-----I 119
           KTT A+++A+ +  +   T    I         ++  N    D++ ID   + S      
Sbjct: 57  KTTSARIIAKAVNCSALITENMTIKTCEKCTNCVSFNNHNHPDIIEIDAASKTSIDDIRR 116

Query: 120 IVEEILYPAMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           I+E   Y  ++      ++ E             ++++        I ATT V  + + +
Sbjct: 117 IIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHVIFIFATTEVQKVPSTI 176

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
             R      L     E++  +++   K   L    EA   IA +S G+ R A  +L +  
Sbjct: 177 ISRCQ-RYDLRRLSFEEIFKLLKYITKQENLIADIEALRIIAHKSEGSARDAVSILDQAA 235

Query: 231 DFAE 234
             + 
Sbjct: 236 SMSA 239


>gi|329948064|ref|ZP_08294965.1| transcription-repair coupling factor [Actinomyces sp. oral taxon
           170 str. F0386]
 gi|328523203|gb|EGF50304.1| transcription-repair coupling factor [Actinomyces sp. oral taxon
           170 str. F0386]
          Length = 1079

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/173 (23%), Positives = 63/173 (36%), Gaps = 22/173 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T +E  GQ    + L   + A +         LF GP G GKTT A+++AR
Sbjct: 4   ALYRRYRPDTFQEVIGQDHVTAPLMAALRADRVTHAY----LFSGPRGCGKTTSARILAR 59

Query: 77  ELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PA 128
            L      T  P    +   DLA         DV+ ID      +     L       PA
Sbjct: 60  CLNCAQAPTDTPCGTCSSCRDLA--TGGPGSLDVVEIDAASHNGVDDARDLRERAAFAPA 117

Query: 129 MEDFQLDLMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
            + +++ ++         G     + V+   +    I ATT    +   ++ R
Sbjct: 118 RDRYKIFILDEAHMVTAQGFNALLKLVEEPPAHVKFIFATTEPEKVIGTIRSR 170


>gi|167855677|ref|ZP_02478434.1| DNA polymerase III subunits gamma and tau [Haemophilus parasuis
           29755]
 gi|167853195|gb|EDS24452.1| DNA polymerase III subunits gamma and tau [Haemophilus parasuis
           29755]
          Length = 672

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/245 (19%), Positives = 78/245 (31%), Gaps = 55/245 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+   E  GQ    S L+  +   +     L H  LF G  G+GKT++A++ A+ L   
Sbjct: 11  RPQRFSEVVGQQHVLSALENGLREGR-----LHHAYLFSGTRGVGKTSIARLFAKGLNCE 65

Query: 82  F------------------------RSTSGPVIAKAGDLAALLTNLEDRD------VLFI 111
                                             K  D   LL N++ +       V  I
Sbjct: 66  TGISADPCGQCANCKAIEEGRFIDLIEIDAASRTKVEDTRELLDNVQYKPTVGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSRHSFNALLKTLEE------------------PPEYVKFLLATTDPQKLPITIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L   E   ++  ++       +     A  ++A  ++G+ R A  L  +   
Sbjct: 168 SRC-MQFHLRALEQSQIQQHLEFILTQEQIPYELSALAKLAKAAQGSIRDALSLTDQAIA 226

Query: 232 FAEVA 236
            + V 
Sbjct: 227 VSNVN 231


>gi|115459988|ref|NP_001053594.1| Os04g0569000 [Oryza sativa Japonica Group]
 gi|38344372|emb|CAE02250.2| OSJNBb0032E06.6 [Oryza sativa Japonica Group]
 gi|113565165|dbj|BAF15508.1| Os04g0569000 [Oryza sativa Japonica Group]
          Length = 335

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 52/277 (18%), Positives = 89/277 (32%), Gaps = 41/277 (14%)

Query: 2   MDREGLLSRNVSQ--EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           MD     + +++   +   +   RP  + +  G  +A + L+       AR   + +++ 
Sbjct: 1   MDASSSSAPDLADAYDIPWVEKYRPTRVADVGGNSDAVARLQ-----DIARDGNMPNLIL 55

Query: 60  VGPPGLGKTTLAQVVAR------------ELGVNFRSTSGPVIAKAGDLA--ALLTNLED 105
            GPPG GKTT    +A             EL  +       V  K    A   +      
Sbjct: 56  SGPPGTGKTTSILSLAHELLGPSYREAVLELNASDDRGLDVVRNKIKMFAQKKVTLQPGR 115

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
             ++ +DE   ++   ++ L   ME +                 N +RF L   T+    
Sbjct: 116 HKIVILDEADSMTSGAQQALRRTMEIYS----------------NTTRFALACNTS--SK 157

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           +  P+Q R  I       + E L  ++   A    +    E    I   + G  R A   
Sbjct: 158 IIEPIQSRCAIVRFSRLSDQEILGRLMIVVAAE-KVPYVPEGLEAIIFTADGDMRQALNN 216

Query: 226 LR-RVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
           L+  V  F  V              L    + K   D
Sbjct: 217 LQATVSGFRFVNQENVFKVCDQPHPLHVKNMVKNVLD 253


>gi|71662047|ref|XP_818036.1| replication factor C, subunit 3 [Trypanosoma cruzi strain CL
           Brener]
 gi|70883263|gb|EAN96185.1| replication factor C, subunit 3, putative [Trypanosoma cruzi]
          Length = 355

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/236 (18%), Positives = 80/236 (33%), Gaps = 19/236 (8%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP TL+E     +  S  +  +++       L H+LF GPPG GKTT  +  A 
Sbjct: 19  PWVEKYRPVTLDEVVAHEDILSTTRRLMDSG-----NLPHLLFYGPPGTGKTTTIKACAY 73

Query: 77  ELGVNFRSTSGPVIAKAGDLAAL-LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
            L    R  +  +   A D   + +   + R+       +  S        P +  F+L 
Sbjct: 74  YLFGKDRIRANVLEMNASDDRGIDVVRQQVREFASTSSFYFASAPAA----PTIAAFKLV 129

Query: 136 LMVGEGPSA--------RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ++      +        R ++              +  +   LQ R     R    +   
Sbjct: 130 ILDEADQMSGDAQAALRRIIEKYTKNVRFCILCNHINKIIPALQSRC-TRFRFAPVKKSA 188

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           + + ++  A+  G+  TDE        S G  R     L+     A     +++ R
Sbjct: 189 MLSRLKFVAQEEGVRFTDEGLVAAFRLSNGDLRRCLNTLQASAMSAGEITEESVYR 244


>gi|66802182|ref|XP_629875.1| replication factor C subunit [Dictyostelium discoideum AX4]
 gi|74851260|sp|Q54E21|RFC2_DICDI RecName: Full=Probable replication factor C subunit 2; AltName:
           Full=Activator 1 subunit 2
 gi|60463272|gb|EAL61464.1| replication factor C subunit [Dictyostelium discoideum AX4]
          Length = 338

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/241 (17%), Positives = 86/241 (35%), Gaps = 38/241 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP  +++  G  E  S L+     + ++   L +++  GPPG GKT+    +AR
Sbjct: 21  PWVEKYRPILIKDIVGNEETVSRLE-----SISKDGNLPNIIISGPPGTGKTSSILCLAR 75

Query: 77  ------------ELGVNFRSTSGPVIAKAGD--LAALLTNLEDRDVLFIDEIHRLSIIVE 122
                       EL  +   T   V  K     +  +        ++ +DE+  ++   +
Sbjct: 76  ALLGANYKEAVYELNASDDRTLDVVRDKIKSFAMKKVTLPAGRHKIIILDEVDSMTSGAQ 135

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           + L   ME     +  G    A              A  +   +  P+Q R  +      
Sbjct: 136 QALRRIME-----IYSGTTRFA-------------FACNQSTKIIEPIQSRCAVLRFTRL 177

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            + + L   ++   ++  +  TD+    I   + G  R A   L+       + +A+ +T
Sbjct: 178 SDSQILTR-LREVVQIEKVPYTDDGLAAIIFTAEGDMRQALNNLQATHSGFGLINAENVT 236

Query: 243 R 243
           +
Sbjct: 237 K 237


>gi|51474034|ref|YP_067790.1| DNA polymerase III subunits gamma and tau [Rickettsia typhi str.
           Wilmington]
 gi|51460346|gb|AAU04309.1| DNA nucleotidyltransferase (DNA-directed) [Rickettsia typhi str.
           Wilmington]
          Length = 507

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 86/244 (35%), Gaps = 21/244 (8%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           +L  + +Q        RP    E  GQ      L   I   +         L  G  G+G
Sbjct: 1   MLENSSNQYIPFARKYRPNNFTELQGQEVLVKILSYTILNDRLVGGY----LLTGIRGVG 56

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLT--NLEDRDVLFIDEIHRLS-----I 119
           KTT A+++A+ +  +   T    I         ++  N    D++ ID   + S      
Sbjct: 57  KTTSARIIAKAVNCSALITENMTIKTCEKCTNCVSFNNHNHPDIIEIDAASKTSIDDIRR 116

Query: 120 IVEEILYPAMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           I+E   Y  ++      ++ E             ++++        I ATT V  + + +
Sbjct: 117 IIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHVIFIFATTEVQKVPSTI 176

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
             R      L     E++  +++   K   L    EA   IA +S G+ R A  +L +  
Sbjct: 177 ISRCQ-RYDLRRLSFEEIFKLLKYITKQENLIADIEALRIIAHKSEGSARDAVSILDQAA 235

Query: 231 DFAE 234
             + 
Sbjct: 236 SMSA 239


>gi|221130788|ref|XP_002166795.1| PREDICTED: similar to spermatogenesis associated 5 [Hydra
            magnipapillata]
          Length = 1973

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/182 (24%), Positives = 67/182 (36%), Gaps = 22/182 (12%)

Query: 29   EFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARELGV 80
            +  GQ E    L+  IE      E            +L  GPPG  KT +A+ +A E G+
Sbjct: 1013 DVGGQSEVKQKLREAIEWPLNHPEVFKRLGISPPRGLLMYGPPGCSKTLMAKALATESGL 1072

Query: 81   NFRSTSGPVI------AKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAMEDF 132
            NF S  GP +           +  +     +    ++F DEI  LSI         + D 
Sbjct: 1073 NFISIKGPELFNKYLGESEKAVREVFRKARNAAPSIIFFDEIDALSIQRSSNSNSVVGDR 1132

Query: 133  QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKT 190
             L  ++ E     S    L    ++AAT R  ++   L    R    I +     E  + 
Sbjct: 1133 VLAQILTELDGVES----LDGVVIVAATNRPDVIDPALLRPGRIDRLIYVPLPNSESRRE 1188

Query: 191  IV 192
            I+
Sbjct: 1189 IL 1190



 Score = 41.6 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 76/220 (34%), Gaps = 24/220 (10%)

Query: 26  TLEEFTG---QVEACSNLKVF-IEAA---KARAEALDH-VLFVGPPGLGKTTLAQVVARE 77
            L +  G   QV+    L     E +   K     L H ++F GP G GKT LA     E
Sbjct: 739 KLSDMGGVDVQVKLLEELVQLPFENSLLYKECGINLTHGIIFYGPSGTGKTHLANAFVNE 798

Query: 78  -LGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPA 128
             GV+    SGP I          +L  +  +   +   +L IDE   L           
Sbjct: 799 LSGVSLTKISGPEIISKYYGESEQNLKKIFMSALSQVPSILIIDEFDILCPSQN---LSQ 855

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
            E  +  +             +L  F + A T  +  +   L+   RF   I +    ++
Sbjct: 856 NESEKRIISTLLTLMDNIPANDL--FVVFAITNNLEGVELSLRRPGRFDQDIEVGVPNVQ 913

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
               I+++        + D++  E+A  + G      + L
Sbjct: 914 QRFNILKKLIANFKHKMGDKSIQELASLTHGYVGSDLKAL 953


>gi|330752012|emb|CBL80524.1| ATP-dependent protease La [uncultured Flavobacteria bacterium]
          Length = 817

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 54/278 (19%), Positives = 108/278 (38%), Gaps = 47/278 (16%)

Query: 27  LEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRST 85
           L++   +     +L V     K R +    +L   GPPG+GKT+L + +A  LG  +   
Sbjct: 361 LDDV--KKRIIEHLAVL----KLRNDMKSPILCLYGPPGVGKTSLGKSIAEALGRKYVRM 414

Query: 86  SGPVIAKAGDLA------------ALLTNLED----RDVLFIDEIHRLSIIVE------- 122
           S   +    ++              +L N++       V  +DEI +LSI  +       
Sbjct: 415 SLGGLRDESEIRGHRKTYIGAMPGRILKNIKKAETGNPVFVLDEIDKLSIGSQGDPSSAM 474

Query: 123 -EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
            E+L P   +   D  +  G        +LS+   +A +  +G +   L+DR  I I ++
Sbjct: 475 LEVLDPEQNNSFYDNFLEVGY-------DLSKVMFVATSNSLGTIQPALRDRMEI-INVS 526

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
            Y IE+   I +R   L    ++D    +  ++         +++      + V   +  
Sbjct: 527 GYTIEEKIEIAKR--HLLPKQLSDHGLNKNDLKIGKPQ--LEKIVEGYTRESGVRGLEKQ 582

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGP 279
             ++   A +++A+++    +   +    I     G P
Sbjct: 583 LAKMVRYAAMKIAMEE----EYVKKVSNAIIVEVLGAP 616


>gi|325676041|ref|ZP_08155723.1| DNA polymerase III, gamma/tau subunit DnaX [Rhodococcus equi ATCC
           33707]
 gi|325553081|gb|EGD22761.1| DNA polymerase III, gamma/tau subunit DnaX [Rhodococcus equi ATCC
           33707]
          Length = 398

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 75/226 (33%), Gaps = 27/226 (11%)

Query: 30  FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPV 89
             GQ      L   ++A +         LF GP G GKT+ A+++AR L        GP 
Sbjct: 1   MVGQEHVTEPLSTALDAGRINHAY----LFSGPRGCGKTSSARILARSLNC----VQGPT 52

Query: 90  IAKAGDLAALLT----NLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLMVGE 140
               G+ A+ +        + DV+ +D      +     + +   Y   E      +V E
Sbjct: 53  STPCGECASCIALGPGGAGNLDVIELDAASHGGVEDTRELRDRAFYAPAESRYRVFIVDE 112

Query: 141 ---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
                        + V+        I ATT    +   ++ R              ++ +
Sbjct: 113 AHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSR-THHYPFRLLAPSTMRGL 171

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
           +++      + V D     +     G+PR +  +L ++   A    
Sbjct: 172 LEKICAQEHVPVEDAVYPLVIRAGGGSPRDSLSVLDQLLAGAGEEG 217


>gi|299141873|ref|ZP_07035008.1| cell division protein FtsH [Prevotella oris C735]
 gi|298576724|gb|EFI48595.1| cell division protein FtsH [Prevotella oris C735]
          Length = 681

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 65/284 (22%), Positives = 113/284 (39%), Gaps = 33/284 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ  A   ++  +E  K          +     L VGPPG GKT LA+ VA E 
Sbjct: 201 TFKDVAGQEGAKQEVQEIVEFLKNPQKYTELGGKIPKGALLVGPPGTGKTLLAKAVAGEA 260

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM- 129
           GV F S SG       V   A  +  + +  +D+   ++FIDEI  +     +   P+M 
Sbjct: 261 GVPFFSMSGSDFVEMFVGVGASRVRDVFSQAKDKSPCIIFIDEIDAVGRARSKN--PSMG 318

Query: 130 ----EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183
                +  L+ ++ E     +     S   ++AAT R  +L   L    RF   I ++  
Sbjct: 319 GNDERENTLNALLTEMDGFGTN----SGVIVLAATNRADMLDKALLRAGRFDRQINVDLP 374

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           ++ + K I +   +   +      + +I   +R TP  +G  +  V + A +  A+  ++
Sbjct: 375 DLTERKAIFKVHLRPLKVD----NSLDIDFLARQTPGFSGADIANVCNEAALIAARHNSK 430

Query: 244 EIADAA-LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETIS 286
            +     L  +     G ++          R+      G  TIS
Sbjct: 431 TVCKQDFLDAVDRIIGGLEKKTKVMTAAEKRSIALHEAGHATIS 474


>gi|162448237|ref|YP_001621369.1| DNA polymerase III subunits gamma and tau [Acholeplasma laidlawii
           PG-8A]
 gi|161986344|gb|ABX81993.1| DNA polymerase III, gamma and tau subunit [Acholeplasma laidlawii
           PG-8A]
          Length = 564

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/247 (19%), Positives = 79/247 (31%), Gaps = 55/247 (22%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     RP+  ++  GQ      L+  +       E + H  +F GP G GKT++A++VA
Sbjct: 5   ALYRTYRPKFFKDVFGQKVIVQTLQNAL-----LNEKIGHAYIFSGPRGTGKTSVAKIVA 59

Query: 76  RELGV------------------------NFRSTSGPVIAKAGDLAALLTN------LED 105
           + L                          +             ++  L         +  
Sbjct: 60  KALNCLEAPAKEPCGKCDVCLGVDRGDVPDIIEIDAASNNGVDEIRDLRDKVKYAPSIGK 119

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
             V  IDE+H L+      L   +E+                         I ATT    
Sbjct: 120 YKVYIIDEVHMLTTAAFNALLKTLEE------------------PPKYVVFILATTEPHK 161

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           +   +  R          E++ ++  +++      L +T EA   IA  + G  R A  L
Sbjct: 162 VPATILSRCQ-RFDFKNIEMDQIEENLKQIINKENLKITPEALTAIARTAEGGMRDALSL 220

Query: 226 LRRVRDF 232
           L +V  F
Sbjct: 221 LDQVVSF 227


>gi|115351816|ref|YP_773655.1| DNA polymerase III subunits gamma and tau [Burkholderia ambifaria
           AMMD]
 gi|115281804|gb|ABI87321.1| DNA polymerase III, subunits gamma and tau [Burkholderia ambifaria
           AMMD]
          Length = 824

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 55/293 (18%), Positives = 101/293 (34%), Gaps = 51/293 (17%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+      GQ      L   ++  +     L H  LF G  G+GKTTL+++ A+ L   
Sbjct: 11  RPKDFASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAMEDFQL 134
              TS P     G   A     E R V +++        +  ++ ++E  +Y  ++    
Sbjct: 66  TGVTSQP----CGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             M+ E             ++++        I ATT    +   +  R  +   L     
Sbjct: 122 VYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPA 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
             + + ++R      ++   +A   +A  ++G+ R A  L     D A    A  +T   
Sbjct: 181 GHIVSHLERILGEEQISFELQALRLLARAAQGSMRDALSL----TDQAIAYSANEVTEAA 236

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
               L            LD  Y+  +          ++ ++AG       I D
Sbjct: 237 VSGMLGA----------LDQTYMVRL----------LDALAAGNGPEILTIAD 269


>gi|218295185|ref|ZP_03496021.1| ATP-dependent metalloprotease FtsH [Thermus aquaticus Y51MC23]
 gi|218244388|gb|EED10913.1| ATP-dependent metalloprotease FtsH [Thermus aquaticus Y51MC23]
          Length = 615

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 58/262 (22%), Positives = 97/262 (37%), Gaps = 26/262 (9%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVARE 77
            T ++  G  EA   L   ++  K         AE    VL VGPPG GKT LA+ VA E
Sbjct: 162 TTFKDVAGHEEAKRELMEVVDFLKNPKKYLELGAEIPKGVLLVGPPGTGKTLLARAVAGE 221

Query: 78  LGVNFRSTSGPVIA------KAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM 129
            GV F S S            A  + +L  +       ++FIDE+  +       +    
Sbjct: 222 AGVPFFSVSASEFMEMFVGVGASRVRSLFEDARKNAPSIIFIDELDSIGRKRGAGIGGGH 281

Query: 130 EDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           ++ +  L  ++ E               ++AAT R  +L   L    RF   + +    +
Sbjct: 282 DEREQTLNQILSEMDGFEKDTS----VIVLAATNRPDILDPALLRPGRFDRQVVVGLPSL 337

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           E+ K I+    +   +A   +A     +    +      L+      A     K I +E 
Sbjct: 338 EERKEILLVHLRGKPVAEDVDALELAHLTPGFSGADLKNLVNEAALMAARNEEKRIRKEH 397

Query: 246 ADAALLRLAIDKMGFDQLDLRY 267
              AL ++    +G ++  L+ 
Sbjct: 398 FLKALDKI---VLGLERPTLKL 416


>gi|297526853|ref|YP_003668877.1| ATPase associated with various cellular activities AAA_3
           [Staphylothermus hellenicus DSM 12710]
 gi|297255769|gb|ADI31978.1| ATPase associated with various cellular activities AAA_3
           [Staphylothermus hellenicus DSM 12710]
          Length = 312

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 48/188 (25%), Positives = 78/188 (41%), Gaps = 26/188 (13%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAA------------LLTNL 103
           H+L  GPPG+GKTT+A++ ++ +G  FR           D+              L    
Sbjct: 39  HILIEGPPGVGKTTVAKLFSQAIGGVFRRVQMTPDLLPSDILGTYFYDMKKGEWVLRKGP 98

Query: 104 EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTR- 162
              +VLF+DE++R     +  L  AM++ Q+ +   EG +    K  L   T +   +  
Sbjct: 99  VFSNVLFVDELNRAPPRTQSALLEAMQEKQVSI---EGTTFSLPKPFLVVATQMPVGSEG 155

Query: 163 VGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
              LT  L DRF    RL++ E      ++ R           +   E  + S  +PR  
Sbjct: 156 TYPLTPVLIDRFAYSCRLSYLEPSVEMGLLSRI----------DIIDEARIDSILSPRDI 205

Query: 223 GRLLRRVR 230
           G + + VR
Sbjct: 206 GEMQKMVR 213


>gi|168183605|ref|ZP_02618269.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum Bf]
 gi|237796986|ref|YP_002864538.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum Ba4 str.
           657]
 gi|182673184|gb|EDT85145.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum Bf]
 gi|229262710|gb|ACQ53743.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum Ba4 str.
           657]
          Length = 601

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 62/267 (23%), Positives = 97/267 (36%), Gaps = 31/267 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH-------VLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  E    L   ++  K+    +D        VL VGPPG GKT LA+ +A E 
Sbjct: 157 TFDDVAGADEEKEELAEIVDFLKSPKRYIDMGARIPKGVLLVGPPGTGKTLLAKAIAGEA 216

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG       V   A  +  L    +     ++FIDEI  +       L    +
Sbjct: 217 GVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNSPCIVFIDEIDAVGRQRGAGLGGGHD 276

Query: 131 DFQLD----LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
           + +      L+  +G  A    I      +IAAT R  +L   L    RF   I +   +
Sbjct: 277 EREQTLNQLLVEMDGFGANEGII------MIAATNRPDILDPALLRPGRFDRQIVVGAPD 330

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           ++  + I++  +K   LA               T      L+      A     + I  E
Sbjct: 331 VKGREAILKVHSKNKHLAEEINLGILAKRTPGFTGADLENLMNESALLAVRKKKELIDME 390

Query: 245 IADAALLRLAIDKMG----FDQLDLRY 267
             + A+ R+           D+ D + 
Sbjct: 391 DLEEAVTRVIAGPEKKSRVIDEEDRKL 417


>gi|167845385|ref|ZP_02470893.1| DNA polymerase III subunits gamma and tau [Burkholderia
           pseudomallei B7210]
          Length = 391

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 85/229 (37%), Gaps = 27/229 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+      GQ      L   ++  +     L H  LF G  G+GKTTL+++ A+ L   
Sbjct: 11  RPKDFASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAMEDFQL 134
              TS P     G   A     E R V +++        +  ++ ++E  +Y  ++    
Sbjct: 66  TGVTSQP----CGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             M+ E             ++++        I ATT    +   +  R  +   L     
Sbjct: 122 VYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPA 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
             + + ++R      +A   +A   +A  ++G+ R A  L  +   ++ 
Sbjct: 181 GHIVSHLERILGEERIAFEPQALRFLARAAQGSMRDALSLTDQAIAYSA 229


>gi|312867346|ref|ZP_07727555.1| DNA polymerase III, subunit gamma and tau [Streptococcus
           parasanguinis F0405]
 gi|311097047|gb|EFQ55282.1| DNA polymerase III, subunit gamma and tau [Streptococcus
           parasanguinis F0405]
          Length = 558

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 63/349 (18%), Positives = 115/349 (32%), Gaps = 50/349 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     R +T  +  GQ      L+  +E      E + H  LF GP G GKT++A++ A
Sbjct: 4   ALYRKYRSQTFGQLVGQQVVARTLRQAVE-----QEKISHAYLFSGPRGTGKTSVAKIFA 58

Query: 76  RELGVNFRST------------------------SGPVIAKAGDLAALLTN------LED 105
           + +    +                                   ++  +         L  
Sbjct: 59  KAMNCPNQVNGEPCNDCYICESITNGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLAK 118

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQ--LDLMVGEGPSARSVKINLSRFTLIAATTR- 162
             V  IDE+H LS      L   +E+    +  ++      +     LSR       +  
Sbjct: 119 HKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIK 178

Query: 163 VGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLA-VTDEAACEIAMRSRGTPRI 221
           +  + + L+        +  YE + ++ I +R       A    + A  +   S  T  I
Sbjct: 179 LPDIIHHLESILATEGIV--YEADAVQIIARRAEGGMRDALSILDQALSLTAGSELTTAI 236

Query: 222 AGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDL------RYLT--MIAR 273
           A  +   +   A   +   I    A AAL +LAI       +        +YL   +I +
Sbjct: 237 AEEITGSISLAALDQYVAAILAHDATAALDQLAIIFDNGKNMARFVTDLLQYLRDLLIVQ 296

Query: 274 NFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPI 322
             G      +  +A L   +  +  LI+   I    I+ + + R+   +
Sbjct: 297 TGGENTHASDLFAANLEADQARLFALIDQATISLADIKNSLQPRIYTEM 345


>gi|167910620|ref|ZP_02497711.1| DNA polymerase III subunits gamma and tau [Burkholderia
           pseudomallei 112]
          Length = 409

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 85/229 (37%), Gaps = 27/229 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+      GQ      L   ++  +     L H  LF G  G+GKTTL+++ A+ L   
Sbjct: 11  RPKDFASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAMEDFQL 134
              TS P     G   A     E R V +++        +  ++ ++E  +Y  ++    
Sbjct: 66  TGVTSQP----CGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             M+ E             ++++        I ATT    +   +  R  +   L     
Sbjct: 122 VYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPA 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
             + + ++R      +A   +A   +A  ++G+ R A  L  +   ++ 
Sbjct: 181 GHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSA 229


>gi|224076092|ref|XP_002192072.1| PREDICTED: replication factor C (activator 1) 2, 40kDa [Taeniopygia
           guttata]
          Length = 318

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 79/223 (35%), Gaps = 38/223 (17%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR-- 76
           +   RP  L E  G  +  S L+VF     A+   + +++  GPPG GKTT    +AR  
Sbjct: 3   VEKYRPMKLSEIVGNEDTVSRLEVF-----AKEGNVPNIIIAGPPGTGKTTSILCLARAL 57

Query: 77  ----------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIHRLSIIVEEI 124
                     EL  +       V  K    A     L      ++ +DE   ++   ++ 
Sbjct: 58  LGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQA 117

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           L   ME +                   +RF    A      +  P+Q R  +       +
Sbjct: 118 LRRTMEIYSKT----------------TRF--ALACNASDKIIEPIQSRCAVLRYTKLTD 159

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
            + L  +++   +   +A TD+    I   ++G  R A   L+
Sbjct: 160 AQILARLLK-IVEKEDVAYTDDGLEAIIFTAQGDMRQALNNLQ 201


>gi|167902380|ref|ZP_02489585.1| DNA polymerase III subunits gamma and tau [Burkholderia
           pseudomallei NCTC 13177]
          Length = 428

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 85/229 (37%), Gaps = 27/229 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+      GQ      L   ++  +     L H  LF G  G+GKTTL+++ A+ L   
Sbjct: 11  RPKDFASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAMEDFQL 134
              TS P     G   A     E R V +++        +  ++ ++E  +Y  ++    
Sbjct: 66  TGVTSQP----CGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             M+ E             ++++        I ATT    +   +  R  +   L     
Sbjct: 122 VYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPA 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
             + + ++R      +A   +A   +A  ++G+ R A  L  +   ++ 
Sbjct: 181 GHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSA 229


>gi|15897351|ref|NP_341956.1| AAA ATPase family protein [Sulfolobus solfataricus P2]
 gi|13813572|gb|AAK40746.1| AAA family ATPase [Sulfolobus solfataricus P2]
          Length = 769

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 56/244 (22%), Positives = 86/244 (35%), Gaps = 24/244 (9%)

Query: 9   SRNVSQEDADISLLRPR-TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLF 59
           S  + QE    S   P+ T E+     +    ++  +E      E   H        VL 
Sbjct: 181 SLEIRQEPVKESAAVPKVTWEDIGDLEDVKEKIREIVELPMRHPEVFQHLGIEPPKGVLL 240

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFI 111
            GPPG+GKT LA+ +A E+G  F S +GP I           L  +    E     ++FI
Sbjct: 241 YGPPGVGKTLLARALANEIGAYFTSINGPEIMSKFYGESEQRLREIFEEAEKNSPAIIFI 300

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DEI  ++   EE+     +     L+               +  +I AT R   +   L+
Sbjct: 301 DEIDAIAPKREEVTGEVEKRVVAQLLT-----LMDGIKGRGKVIVIGATNRPDAVDPALR 355

Query: 172 D--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
              RF   I +   + +  K I+Q   +   LA   +           T      L R  
Sbjct: 356 RPGRFDREIEIRPPDAKARKEILQVHTRNMPLAEDVDLDKISEQTHGYTGADLAALAREA 415

Query: 230 RDFA 233
              A
Sbjct: 416 AMNA 419



 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 48/193 (24%), Positives = 76/193 (39%), Gaps = 22/193 (11%)

Query: 28  EEFTGQVEACSNLKVFIE--------AAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           E+  G  EA   L+  +E          K        +L  GPPG GKT LA+ VA E G
Sbjct: 476 EDIGGLEEAKQQLREAVEWPLKFPEMFEKLGIRPPKGILLFGPPGTGKTMLAKAVATESG 535

Query: 80  VNFRSTSGPVI--AKAGDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAMED 131
            NF +  GP I     G+    +  +  R       V+F DEI  ++ +         + 
Sbjct: 536 ANFIAVRGPEILSKWVGESEKAVREIFRRARQTAPCVIFFDEIDSIAPMR----GFTHDS 591

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
              + +V +  S      +L+R  +IAAT R  +L   L    RF   I +   + +   
Sbjct: 592 GVTERIVNQLLSEMDGIQSLNRVVVIAATNRPDILDPALLRPGRFDRLIYVPPPDEKARI 651

Query: 190 TIVQRGAKLTGLA 202
            I++   +   + 
Sbjct: 652 EILKIYTRTLPID 664


>gi|46190545|ref|ZP_00121363.2| COG2812: DNA polymerase III, gamma/tau subunits [Bifidobacterium
           longum DJO10A]
 gi|189440151|ref|YP_001955232.1| DNA polymerase III subunits gamma and tau [Bifidobacterium longum
           DJO10A]
 gi|189428586|gb|ACD98734.1| DNA polymerase III gamma/tau subunit [Bifidobacterium longum
           DJO10A]
          Length = 960

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 59/282 (20%), Positives = 93/282 (32%), Gaps = 28/282 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     RP T E   GQ +    L   ++  K     L H  LF GP G GKT+ A+++A
Sbjct: 4   ALYRRYRPDTFEGVIGQDQVTVPLMRALDEGK-----LTHAYLFSGPRGCGKTSSARILA 58

Query: 76  RELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------P 127
           R +      TS P        DLA         DV+ ID      +     L       P
Sbjct: 59  RCVNCAKGPTSHPCGECESCKDLA--TGGPGSIDVVEIDAASHNGVDDARELRERAGFAP 116

Query: 128 AMEDFQLDLMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR---FGI 176
           A + +++ ++         G     + V+        I ATT    +   ++ R   +  
Sbjct: 117 ARDRYKIFILDEAHMVTQQGFNALLKIVEEPPEHVMFIFATTEPDKVIGTIRSRTHHYPF 176

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
            +         L+TI  +        V   A        R T  +  +L+    +     
Sbjct: 177 RLVPQEVMGPYLETICDKEGIKPEPGVLKLAMRAGGGSMRDTLSVLDQLMVGSVEGVITH 236

Query: 237 HAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
            A          AL+  A+D +  D        +I +   GG
Sbjct: 237 DAAVALLGFTPEALIGEAVDAV-IDHNGEALYGVIQKVVVGG 277


>gi|296506517|ref|YP_003667751.1| DNA polymerase III subunits gamma and tau [Bacillus thuringiensis
           BMB171]
 gi|296327104|gb|ADH10031.1| DNA polymerase III, gamma and tau subunits [Bacillus thuringiensis
           BMB171]
          Length = 536

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 85/231 (36%), Gaps = 20/231 (8%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP +  +  GQ    +     I  A    +     L  GP G GKTT+A+++ +
Sbjct: 6   ALYRAYRPNSFNDLVGQNHIKTT----IMNAIKLEKVAHAYLLSGPRGTGKTTVAKIIGK 61

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII------VEEILYPAME 130
            +      ++G    K  + + +  N +  D+L  D      +        +  L P   
Sbjct: 62  SVNCFTPLSNGEPCQKCANCSDINNN-KFADILEFDAASNNGVEEIRQIRDQVHLAPVTG 120

Query: 131 DFQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
            +++ ++               ++++   +    I ATT    +   +  R         
Sbjct: 121 KYKVYIIDEVHMLSNSAFNALLKTLEEPPAHVIFILATTDPQKVPKTIISRCQ-QFEFRN 179

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
             ++ +   ++  +   G+ +TDEA   I+  + G  R A  ++ +V  +A
Sbjct: 180 IPLQAMIDRLKFISNDQGIQITDEALHLISQLAEGGLRNALSIMDQVIAYA 230


>gi|15897129|ref|NP_341734.1| AAA ATPase family protein [Sulfolobus solfataricus P2]
 gi|284174370|ref|ZP_06388339.1| AAA ATPase family protein [Sulfolobus solfataricus 98/2]
 gi|13813310|gb|AAK40524.1| AAA family ATPase [Sulfolobus solfataricus P2]
 gi|261601791|gb|ACX91394.1| AAA family ATPase, CDC48 subfamily [Sulfolobus solfataricus 98/2]
          Length = 769

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 56/291 (19%), Positives = 101/291 (34%), Gaps = 31/291 (10%)

Query: 24  PR-TLEEFTGQVEACSNLKVFIEA--------AKARAEALDHVLFVGPPGLGKTTLAQVV 74
           PR T E+  G       ++  +E          +   E    +L  GPPG+GKT LA+ +
Sbjct: 187 PRVTYEDIGGMKNIIEKVRELVELPLRHPELFKRLGIEPPKGILLYGPPGVGKTLLAKAI 246

Query: 75  ARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILY 126
           A E    F S +GP I           L  +  + +     ++F+DEI  ++   +E++ 
Sbjct: 247 ANETDAYFTSINGPEIMSKFYGESEQRLREIFEDAKKHAPAIIFVDEIDAIAPKRDEVIG 306

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
                    L+            N     +IAAT R   +   L+   RF   I +   +
Sbjct: 307 EVERRVVAQLLT-----LMDGLENRGNVIVIAATNRPSAVDPALRRPGRFDREIEIPLPD 361

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            +    I+Q   +   L+   +      M    T      L+R            ++ R 
Sbjct: 362 KQGRLEILQIHTRNMPLSKDVDLEKLADMTHGYTGADLSALVREAAM-------NSLRRY 414

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDA 295
           +    L +  I     + ++++    I       P G+  I   + E +  
Sbjct: 415 LPKIDLNQDKIPPEILESMEVKMEDFINAFKEIVPSGLREIYIEVPEVKWT 465



 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 40/152 (26%), Positives = 62/152 (40%), Gaps = 14/152 (9%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLAALLTNLEDR--- 106
           E    +L  GPPG GKT LA+ VA E G NF +  GP I     G+    +  +  +   
Sbjct: 497 EPPKGILLFGPPGTGKTMLAKAVATESGANFIAVRGPEILSKWVGESEKAVREIFRKARM 556

Query: 107 ---DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
               V+F DEI  ++ I       + +    + +V +  +       L    +IAAT R 
Sbjct: 557 YAPAVIFFDEIDSIAPIR----GISYDSGVTERIVNQLLAEMDGIEKLENVVVIAATNRP 612

Query: 164 GLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQ 193
            +L   L    RF   I +   +      I++
Sbjct: 613 DILDPALLRPGRFEKLIYVPPPDKRARTEILK 644


>gi|187776529|ref|ZP_02993002.1| hypothetical protein CLOSPO_00034 [Clostridium sporogenes ATCC
           15579]
 gi|187775188|gb|EDU38990.1| hypothetical protein CLOSPO_00034 [Clostridium sporogenes ATCC
           15579]
          Length = 544

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 82/225 (36%), Gaps = 29/225 (12%)

Query: 23  RPRTLEEFTGQVEACSNLK-VFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           RPRT +E  GQ      LK   IE   A A      LF G  G GKT+ A+++++ +   
Sbjct: 14  RPRTFKEVVGQKHITVTLKNQVIEKRIAHA-----YLFCGTRGTGKTSTAKILSKAVNC- 67

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI--------IVEEILYPAMEDFQ 133
                 P   +  +   +   +    ++ + E+   S         ++E + YP  E   
Sbjct: 68  ----LNPKDGEPCNECEICNKINSGTLMDVIEMDAASKRKLEDIKEVIENVKYPPQEGKN 123

Query: 134 LDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
              ++ E             ++++   S    I ATT    L   +  R           
Sbjct: 124 KVYIMDEVHMLTQEAVNAFLKTLEEPPSNVIFILATTDPQKLPITILSRCQ-RFDFRRIR 182

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
            E++   ++      G+   D++   IA  S G  R A  +L +V
Sbjct: 183 NEEIFERLRSIVSEQGIYADDKSLNLIARMSDGAMRDALSILDQV 227


>gi|322800491|gb|EFZ21495.1| hypothetical protein SINV_13651 [Solenopsis invicta]
          Length = 723

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 59/255 (23%), Positives = 94/255 (36%), Gaps = 30/255 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  EA   L   +E  K          +    VL VGPPG GKT LA+ VA E 
Sbjct: 285 TFSDVKGVDEAKQELLNVVEFLKNPDKFSALGGKLPKGVLLVGPPGTGKTLLARAVAGEA 344

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F   +GP          A  +  L    +++   V+FIDEI  +       +     
Sbjct: 345 GVPFFHVAGPEFDEILVGQGARRVRDLFRAAKEKAPCVVFIDEIDSVGAKRTNSVLHPYA 404

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
           +  ++ ++ E    R  +       ++ AT R   L   L    RF + I +N  +    
Sbjct: 405 NQTINQLLSEMDGFRQNEG----VIVLGATNRRKDLDKALMRPGRFDVEIYVNKPDYLGR 460

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF----AEVAHAKTITRE 244
           K I+        LA       +    +R T    G  L  + +     A +  A  +T +
Sbjct: 461 KEILD-----LYLARILTHEVDTVYLARCTTGFTGADLENMVNQAALRAAIDEADCVTMK 515

Query: 245 IADAALLRLAIDKMG 259
             + A  ++ +   G
Sbjct: 516 HLEYARDKVLMGPEG 530


>gi|284173309|ref|ZP_06387278.1| AAA ATPase family protein [Sulfolobus solfataricus 98/2]
 gi|261602026|gb|ACX91629.1| AAA family ATPase, CDC48 subfamily [Sulfolobus solfataricus 98/2]
          Length = 759

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 56/244 (22%), Positives = 86/244 (35%), Gaps = 24/244 (9%)

Query: 9   SRNVSQEDADISLLRPR-TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLF 59
           S  + QE    S   P+ T E+     +    ++  +E      E   H        VL 
Sbjct: 171 SLEIRQEPVKESAAVPKVTWEDIGDLEDVKEKIREIVELPMRHPEVFQHLGIEPPKGVLL 230

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFI 111
            GPPG+GKT LA+ +A E+G  F S +GP I           L  +    E     ++FI
Sbjct: 231 YGPPGVGKTLLARALANEIGAYFTSINGPEIMSKFYGESEQRLREIFEEAEKNSPAIIFI 290

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DEI  ++   EE+     +     L+               +  +I AT R   +   L+
Sbjct: 291 DEIDAIAPKREEVTGEVEKRVVAQLLT-----LMDGIKGRGKVIVIGATNRPDAVDPALR 345

Query: 172 D--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
              RF   I +   + +  K I+Q   +   LA   +           T      L R  
Sbjct: 346 RPGRFDREIEIRPPDAKARKEILQVHTRNMPLAEDVDLDKISEQTHGYTGADLAALAREA 405

Query: 230 RDFA 233
              A
Sbjct: 406 AMNA 409



 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 48/193 (24%), Positives = 76/193 (39%), Gaps = 22/193 (11%)

Query: 28  EEFTGQVEACSNLKVFIE--------AAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           E+  G  EA   L+  +E          K        +L  GPPG GKT LA+ VA E G
Sbjct: 466 EDIGGLEEAKQQLREAVEWPLKFPEMFEKLGIRPPKGILLFGPPGTGKTMLAKAVATESG 525

Query: 80  VNFRSTSGPVI--AKAGDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAMED 131
            NF +  GP I     G+    +  +  R       V+F DEI  ++ +         + 
Sbjct: 526 ANFIAVRGPEILSKWVGESEKAVREIFRRARQTAPCVIFFDEIDSIAPMR----GFTHDS 581

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
              + +V +  S      +L+R  +IAAT R  +L   L    RF   I +   + +   
Sbjct: 582 GVTERIVNQLLSEMDGIQSLNRVVVIAATNRPDILDPALLRPGRFDRLIYVPPPDEKARI 641

Query: 190 TIVQRGAKLTGLA 202
            I++   +   + 
Sbjct: 642 EILKIYTRTLPID 654


>gi|255537345|ref|XP_002509739.1| replication factor C / DNA polymerase III gamma-tau subunit,
           putative [Ricinus communis]
 gi|223549638|gb|EEF51126.1| replication factor C / DNA polymerase III gamma-tau subunit,
           putative [Ricinus communis]
          Length = 333

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 74/226 (32%), Gaps = 38/226 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP  + +  G  +A S L+V      AR   + +++  GPPG GKTT    +A 
Sbjct: 16  PWVEKYRPSKICDIVGNEDAVSRLQVI-----ARDGNMPNLILSGPPGTGKTTSILALAH 70

Query: 77  E-----LGVNFRSTSGPVIAKAGDLAALLTNLEDR---------DVLFIDEIHRLSIIVE 122
           E             +         +   +     +          V+ +DE   ++   +
Sbjct: 71  ELLGPNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTSGAQ 130

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           + L   ME +                 N +RF L   T+    +  P+Q R  +      
Sbjct: 131 QALRRTMEIYS----------------NSTRFALACNTS--SKIIEPIQSRCALVRFSRL 172

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            + E L  ++    +   +    E    I   + G  R A   L+ 
Sbjct: 173 SDQEILGRLII-VVQAEKVPYVPEGLEAIIFTADGDMRQALNNLQA 217


>gi|153941061|ref|YP_001389393.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum F
           str. Langeland]
 gi|152936957|gb|ABS42455.1| DNA polymerase III, gamma and tau subunit [Clostridium botulinum F
           str. Langeland]
 gi|295317501|gb|ADF97878.1| DNA polymerase III, gamma and tau subunit [Clostridium botulinum F
           str. 230613]
          Length = 541

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 82/225 (36%), Gaps = 29/225 (12%)

Query: 23  RPRTLEEFTGQVEACSNLK-VFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           RPRT +E  GQ      LK   IE   A A      LF G  G GKT+ A+++++ +   
Sbjct: 11  RPRTFKEVVGQKHITVTLKNQVIEKRIAHA-----YLFCGTRGTGKTSTAKILSKAVNC- 64

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI--------IVEEILYPAMEDFQ 133
                 P   +  +   +   +    ++ + E+   S         ++E + YP  E   
Sbjct: 65  ----LNPKDGEPCNECEICNKINSGTLMDVIEMDAASKRKLEDIKEVIENVKYPPQEGKN 120

Query: 134 LDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
              ++ E             ++++   S    I ATT    L   +  R           
Sbjct: 121 KVYIMDEVHMLTQEAVNAFLKTLEEPPSNVIFILATTDPQKLPITILSRCQ-RFDFRRIR 179

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
            E++   ++      G+   D++   IA  S G  R A  +L +V
Sbjct: 180 NEEIFERLRAIVSEQGIYADDKSLNLIARMSDGAMRDALSILDQV 224


>gi|281426190|ref|ZP_06257103.1| cell division protein FtsH [Prevotella oris F0302]
 gi|281399766|gb|EFB30597.1| cell division protein FtsH [Prevotella oris F0302]
          Length = 683

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 65/284 (22%), Positives = 113/284 (39%), Gaps = 33/284 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ  A   ++  +E  K          +     L VGPPG GKT LA+ VA E 
Sbjct: 201 TFKDVAGQEGAKQEVQEIVEFLKNPQKYTELGGKIPKGALLVGPPGTGKTLLAKAVAGEA 260

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM- 129
           GV F S SG       V   A  +  + +  +D+   ++FIDEI  +     +   P+M 
Sbjct: 261 GVPFFSMSGSDFVEMFVGVGASRVRDVFSQAKDKSPCIIFIDEIDAVGRARSKN--PSMG 318

Query: 130 ----EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183
                +  L+ ++ E     +     S   ++AAT R  +L   L    RF   I ++  
Sbjct: 319 GNDERENTLNALLTEMDGFGTN----SGVIVLAATNRADMLDKALLRAGRFDRQINVDLP 374

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           ++ + K I +   +   +      + +I   +R TP  +G  +  V + A +  A+  ++
Sbjct: 375 DLTERKAIFKVHLRPLKVD----NSLDIDFLARQTPGFSGADIANVCNEAALIAARHNSK 430

Query: 244 EIADAA-LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETIS 286
            +     L  +     G ++          R+      G  TIS
Sbjct: 431 TVCKQDFLDAVDRIIGGLEKKTKVMTAAEKRSIALHEAGHATIS 474


>gi|282899399|ref|ZP_06307366.1| AAA ATPase, central region protein [Cylindrospermopsis raciborskii
           CS-505]
 gi|281195663|gb|EFA70593.1| AAA ATPase, central region protein [Cylindrospermopsis raciborskii
           CS-505]
          Length = 615

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 58/227 (25%), Positives = 89/227 (39%), Gaps = 27/227 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVARE 77
           +L++  G  +   +LK  I     R + L          VL VGPPG GKT  A+ +A E
Sbjct: 93  SLKDIGGLSQVVKDLKELIAIPLKRPDLLAKLGLEPTHGVLLVGPPGTGKTLTARALAEE 152

Query: 78  LGVNFRSTSGP-VIAK-----AGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
           LGVN+ +  GP VI+K        L  +          ++FIDEI  L+         A+
Sbjct: 153 LGVNYIALVGPEVISKYYGEAEQKLRGIFEKAAKNAPCIIFIDEIDSLAPDR-----SAV 207

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
           E      +V +         +     ++AAT R   L   L+   RF   I+    +   
Sbjct: 208 EGEVEKRLVAQLLGLMDGFSHTPGVIVLAATNRPDHLDPALRRPGRFDREIQFRIPDANG 267

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
            K I+Q    +   A+  +   ++   S  T    G  L+ V   A 
Sbjct: 268 RKEILQ----VLTRAMPLDDTVDLEFISDRTVGFVGADLKAVCQKAA 310



 Score = 50.1 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 34/110 (30%), Positives = 48/110 (43%), Gaps = 16/110 (14%)

Query: 28  EEFTGQVEACSNLKVFIEAA--------KARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           E+  G       L+  +E A        + +A A   +L  GPPG GKT LA+ VA +  
Sbjct: 361 EDIGGLEAIKQTLRESVEGALLYPELYRQTKAVAPRGILLWGPPGTGKTLLAKAVASQAR 420

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIV 121
            NF + +GP +      A    +  L T     D  V+FIDEI  L+   
Sbjct: 421 ANFIAVNGPELLTRWVGASEQAVRELFTKARQADPCVIFIDEIDTLAPAR 470


>gi|227545629|ref|ZP_03975678.1| DNA polymerase III, gamma/tau subunit [Bifidobacterium longum
           subsp. infantis ATCC 55813]
 gi|227213745|gb|EEI81584.1| DNA polymerase III, gamma/tau subunit [Bifidobacterium longum
           subsp. infantis ATCC 55813]
          Length = 940

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 59/282 (20%), Positives = 93/282 (32%), Gaps = 28/282 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     RP T E   GQ +    L   ++  K     L H  LF GP G GKT+ A+++A
Sbjct: 4   ALYRRYRPDTFEGVIGQDQVTVPLMRALDEGK-----LTHAYLFSGPRGCGKTSSARILA 58

Query: 76  RELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------P 127
           R +      TS P        DLA         DV+ ID      +     L       P
Sbjct: 59  RCVNCAKGPTSHPCGECESCKDLA--TGGPGSIDVVEIDAASHNGVDDARELRERAGFAP 116

Query: 128 AMEDFQLDLMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR---FGI 176
           A + +++ ++         G     + V+        I ATT    +   ++ R   +  
Sbjct: 117 ARDRYKIFILDEAHMVTQQGFNALLKIVEEPPEHVMFIFATTEPDKVIGTIRSRTHHYPF 176

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
            +         L+TI  +        V   A        R T  +  +L+    +     
Sbjct: 177 RLVPQEVMGPYLETICDKEGIKPEPGVLKLAMRAGGGSMRDTLSVLDQLMVGSVEGVITH 236

Query: 237 HAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
            A          AL+  A+D +  D        +I +   GG
Sbjct: 237 DAAVALLGFTPEALIGEAVDAV-IDHNGEALYGVIQKVVVGG 277


>gi|170760406|ref|YP_001785357.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum A3
           str. Loch Maree]
 gi|169407395|gb|ACA55806.1| DNA polymerase III, gamma and tau subunit [Clostridium botulinum A3
           str. Loch Maree]
          Length = 541

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 82/225 (36%), Gaps = 29/225 (12%)

Query: 23  RPRTLEEFTGQVEACSNLK-VFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           RPRT +E  GQ      LK   IE   A A      LF G  G GKT+ A+++++ +   
Sbjct: 11  RPRTFKEVVGQKHITVTLKNQVIEKRIAHA-----YLFCGTRGTGKTSTAKILSKAVNC- 64

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI--------IVEEILYPAMEDFQ 133
                 P   +  +   +   +    ++ + E+   S         ++E + YP  E   
Sbjct: 65  ----LNPKDGEPCNECEICNKINSGTLMDVIEMDAASKRKLEDIKEVIENVKYPPQEGKN 120

Query: 134 LDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
              ++ E             ++++   S    I ATT    L   +  R           
Sbjct: 121 KVYIMDEVHMLTQEAVNAFLKTLEEPPSNVIFILATTDPQKLPITILSRCQ-RFDFRRIR 179

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
            E++   ++      G+   D++   IA  S G  R A  +L +V
Sbjct: 180 NEEIFERLRAIVSEQGIYADDKSLNLIARMSDGAMRDALSILDQV 224


>gi|170754521|ref|YP_001779654.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum B1
           str. Okra]
 gi|169119733|gb|ACA43569.1| DNA polymerase III, gamma and tau subunit [Clostridium botulinum B1
           str. Okra]
          Length = 541

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 82/225 (36%), Gaps = 29/225 (12%)

Query: 23  RPRTLEEFTGQVEACSNLK-VFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           RPRT +E  GQ      LK   IE   A A      LF G  G GKT+ A+++++ +   
Sbjct: 11  RPRTFKEVVGQKHITVTLKNQVIEKRIAHA-----YLFCGTRGTGKTSTAKILSKAVNC- 64

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI--------IVEEILYPAMEDFQ 133
                 P   +  +   +   +    ++ + E+   S         ++E + YP  E   
Sbjct: 65  ----LNPKDGEPCNECEICNKINSGTLMDVIEMDAASKRKLEDIKEVIENVKYPPQEGKN 120

Query: 134 LDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
              ++ E             ++++   S    I ATT    L   +  R           
Sbjct: 121 KVYIMDEVHMLTQEAVNAFLKTLEEPPSNVIFILATTDPQKLPITILSRCQ-RFDFRRIR 179

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
            E++   ++      G+   D++   IA  S G  R A  +L +V
Sbjct: 180 NEEIFERLRAIVSEQGIYADDKSLNLIARMSDGAMRDALSILDQV 224


>gi|14601365|ref|NP_147901.1| cell division protein CDC48 [Aeropyrum pernix K1]
 gi|5105048|dbj|BAA80362.1| cell division control protein 48, AAA family [Aeropyrum pernix K1]
          Length = 726

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 49/197 (24%), Positives = 76/197 (38%), Gaps = 26/197 (13%)

Query: 18  DISLLR--PR-TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLG 66
           +I  LR  P+ T E+     EA   ++  +E      E   H        +L  GPPG G
Sbjct: 171 EIERLRGVPKVTWEDIGDLEEAKERIREIVELPMKHPEIFKHLGIEPPKGILLYGPPGTG 230

Query: 67  KTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLS 118
           KT LA+ +A E+G  F S +GP I           L  +    E+    ++FIDEI  ++
Sbjct: 231 KTLLAKALANEIGAYFISINGPEIMSKYYGESEQRLREIFKEAEENAPSIIFIDEIDAIA 290

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGI 176
              EE+     +     L+               R  +I AT R   +   L+   RF  
Sbjct: 291 PKREEVTGEVEKRVVAQLLT-----LMDGLKERGRVIVIGATNRPDAIDPALRRPGRFDR 345

Query: 177 PIRLNFYEIEDLKTIVQ 193
            I +   +      I++
Sbjct: 346 EIEIRPPDKRARAEILK 362



 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 49/186 (26%), Positives = 69/186 (37%), Gaps = 21/186 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
              +  G  EA   L+  +E      E            VL  GPPG GKT LA+ VA E
Sbjct: 457 RWSDIGGLEEAKQALREAVEWPLKHPEIFEKMGIRPPRGVLLFGPPGTGKTLLAKAVATE 516

Query: 78  LGVNFRSTSGPVI--AKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAM 129
            G NF +  GP I     G+    +  + +R       V+F DEI  ++           
Sbjct: 517 SGANFIAVRGPEILSKWVGESERAIRKIFERARQAAPAVVFFDEIDAIAPARGARFD--- 573

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                D +V +  +       LS   +I AT R  +L   L    RF   I +   + E 
Sbjct: 574 TSGVTDRIVNQMLAEMDGIQPLSNVVVIGATNRPDILDPALLRPGRFDRLIYVPPPDKEA 633

Query: 188 LKTIVQ 193
            K I +
Sbjct: 634 RKEIFK 639


>gi|302343842|ref|YP_003808371.1| DNA polymerase III, subunits gamma and tau [Desulfarculus baarsii
           DSM 2075]
 gi|301640455|gb|ADK85777.1| DNA polymerase III, subunits gamma and tau [Desulfarculus baarsii
           DSM 2075]
          Length = 532

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 56/177 (31%), Gaps = 36/177 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN- 81
           RP T  +  GQ    + L   I + +          F GP G+GKT++A+++A+ L    
Sbjct: 11  RPATFSQVVGQEHVTATLAGAIASGRVAHA----FCFTGPRGVGKTSVARILAKALNCQQ 66

Query: 82  -----------------------FRSTSGPVIAKAGDLAALLTNLEDRD------VLFID 112
                                   +       ++  D+  L   +  R       V  +D
Sbjct: 67  GPTDQPCGVCVHCREIDEGRAVDVQEIDAASNSRVEDVRELREVIRFRPQSARHRVTILD 126

Query: 113 EIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           E+H LS      L   +E+       ++    + +     LSR            + 
Sbjct: 127 EVHMLSKAAFNALLKTLEEPPEHAVFILATTDAHKVPLTILSRCQRYDFRRLAPRVL 183


>gi|251798422|ref|YP_003013153.1| Fis family transcriptional regulator [Paenibacillus sp. JDR-2]
 gi|247546048|gb|ACT03067.1| Sigma 54 interacting domain protein [Paenibacillus sp. JDR-2]
          Length = 567

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 64/299 (21%), Positives = 99/299 (33%), Gaps = 63/299 (21%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           MD+   L R+VS         RP+ +++  GQ +    LK  + +A  +     HV+  G
Sbjct: 44  MDKLRKL-RSVSLTKPLAEKTRPQAMQDIVGQTDGLRALKAALCSANPQ-----HVIIYG 97

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR--------------- 106
           PPG+GKT  A+VV  E   N  S      AK  ++ A     ++R               
Sbjct: 98  PPGVGKTAAARVVLEEAKKNPSSPFLNE-AKFTEIDATTARFDERGIADPLIGSVHDPIY 156

Query: 107 ------------------------DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGP 142
                                    +LFIDEI  L  I    L   +ED ++ L   E  
Sbjct: 157 QGAGAMGVAGIPQPKPGAVTKAHGGILFIDEIGELHPIQMNKLLKVLEDRKVFL---ESA 213

Query: 143 SARSVKINLS-------------RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
              S   N+               F L+ ATTR      P      + I        ++ 
Sbjct: 214 YYNSEDANIPLYIHDIFQNGLPADFRLVGATTRSPQDLPPAIRSRCMEIYFRPLLASEIA 273

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +I +   K  G     +A   +   +    R A  +++     A       IT    + 
Sbjct: 274 SIAENAVKKIGFGPCPDAVDVVKKYATN-GREAVNVIQLAAGIALSEKRDAITAADVEW 331


>gi|171186069|ref|YP_001794988.1| AAA family ATPase, CDC48 subfamily protein [Thermoproteus
           neutrophilus V24Sta]
 gi|170935281|gb|ACB40542.1| AAA family ATPase, CDC48 subfamily [Thermoproteus neutrophilus
           V24Sta]
          Length = 737

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 62/278 (22%), Positives = 99/278 (35%), Gaps = 35/278 (12%)

Query: 26  TLEEFTGQVEACSNLKVFIE--------AAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
             ++  G       L+  +E          +   E    +L  GPPG+GKT  A+ VA E
Sbjct: 462 RWDDIGGYETIKQELREIVEWPMKYKHYFDELGVEPPKGILLFGPPGVGKTLFAKAVATE 521

Query: 78  LGVNFRSTSGPVI--AKAGDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAM 129
            G NF +  GP +     G+    +  +  R       V+F DEI  ++      L    
Sbjct: 522 SGANFIAVRGPELLSKWVGESEKAIREVFKRARMAAPCVIFFDEIDSIAPARGSRLGD-- 579

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                D MV +  +       L    ++AAT R  +L   L    RF   I +   +++ 
Sbjct: 580 -SGVTDRMVNQLLAEMDGIGTLKNVVVMAATNRPDILDPALLRPGRFDRVIYVPPPDLKA 638

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSR--------GTPRIAGRLLRRVRDFAEVAHAK 239
              I++   K   L   D    E+A R+            R A  L  R         AK
Sbjct: 639 RVEILKVHTKRIKL-GDDVNLEELAKRTEGYTGADLAAVVREAAMLALRETIKERSVKAK 697

Query: 240 TITREIADAALLR-----LAIDKMGFDQLDLRYLTMIA 272
            ++ +  + AL R        D   ++++  R    IA
Sbjct: 698 PVSAKHFEEALKRIPPSLTPEDIRRYEEMAKRVRRAIA 735



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 49/117 (41%), Gaps = 17/117 (14%)

Query: 24  PR-TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVV 74
           PR T E+     +A   ++  +E      E   H        +L +GPPG GKT LA+ V
Sbjct: 171 PRVTWEDIGDLEDAKQKIRELVELPLRHPELFKHLGIEPPKGILLIGPPGTGKTLLAKAV 230

Query: 75  ARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEE 123
           A E    F + +GP I           L  +    +     ++FIDEI  ++   EE
Sbjct: 231 ANEANAYFVAINGPEIMSKYYGESEARLREIFEEAKKNAPAIIFIDEIDAIAPKREE 287


>gi|297183472|gb|ADI19603.1| DNA polymerase III, gamma/tau subunits [uncultured SAR11 cluster
           bacterium HF0770_37D02]
          Length = 563

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 58/322 (18%), Positives = 101/322 (31%), Gaps = 72/322 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  EE  GQ          I  +    +  +  L  G  G+GKTT A+++A+ +    
Sbjct: 14  RPKNFEELIGQDMMVQT----ITNSIKLDKLPNAYLLTGIRGVGKTTTARLIAKAINCKM 69

Query: 83  RSTSG---------------------------PVIAKAGDLAALLTNLE------DRDVL 109
               G                                  D+  L+ + +         + 
Sbjct: 70  DFFQGEKCNSNEHCHCKEIINSRHLDVLEMDAASRTGIDDVRELIESSKYNPTHAKYKIF 129

Query: 110 FIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
            IDE+H LS      L   +E+                         I ATT V  +   
Sbjct: 130 IIDEVHMLSKQAFNGLLKTLEE------------------PPPHLKFIFATTEVKKVPVT 171

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           +  R      L+   I+ L   +++  K+    ++D A   IA  S G+ R +  LL R 
Sbjct: 172 IVSRCQ-RFDLHRVSIKVLLGQLKKILKIENGNISDAALKLIAKTSEGSVRDSLSLLDRA 230

Query: 230 RDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGL 289
              ++    K I        L               + L ++   F G       +   +
Sbjct: 231 L-VSQHITEKEIDETFVRKMLGIADRS---------KILELLQFIFYG------NLKESI 274

Query: 290 SEPRDAIEDLIEPYMIQQGFIQ 311
            + R+ I + +EP      F++
Sbjct: 275 KQLREMINEGVEPVNFLNDFLE 296


>gi|291277272|ref|YP_003517044.1| putative DNA polymerase III subunit gamma [Helicobacter mustelae
           12198]
 gi|290964466|emb|CBG40316.1| putative DNA polymerase III subunit gamma [Helicobacter mustelae
           12198]
          Length = 585

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 65/217 (29%), Gaps = 39/217 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T  +  GQ      L + +E    +       LF G  G GKT+ A++ AR
Sbjct: 4   ALALKYRPTTFADLIGQESVAKTLSLALE----KNRIAHAYLFSGLRGSGKTSSARIFAR 59

Query: 77  ELGVN------------------------FRSTSGPVIAKAGDLAALLTN------LEDR 106
            L                                     +  D+  L+            
Sbjct: 60  ALQCQKAPIKDPCNTCDNCIQSLEGRHFDIIEMDAASSRRIDDIRNLIEQTKYSPSFGRY 119

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164
            +  IDE+H L+      L   +E+    +  ++      +     LSR           
Sbjct: 120 KIFIIDEVHMLTKEAFNALLKTLEEPPNYVKFILATTDPLKLPATILSRTQHFRFKKIPH 179

Query: 165 LLTNPLQDRFGIPIRLNF-YEIEDLKTIVQRGAKLTG 200
            L   LQ  + I  +    YE E ++ I + G+    
Sbjct: 180 KLI--LQHLYNILEKEEISYEKEAIEMIARSGSGSLR 214


>gi|167562528|ref|ZP_02355444.1| DNA polymerase III subunits gamma and tau [Burkholderia
           oklahomensis EO147]
          Length = 356

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 85/229 (37%), Gaps = 27/229 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+      GQ      L   ++  +     L H  LF G  G+GKTTL+++ A+ L   
Sbjct: 11  RPKDFASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAMEDFQL 134
              TS P     G   A     E R V +++        +  ++ ++E  +Y  ++    
Sbjct: 66  TGVTSQP----CGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             M+ E             ++++        I ATT    +   +  R  +   L     
Sbjct: 122 VYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPA 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
             + + ++R      +A   +A   +A  ++G+ R A  L  +   ++ 
Sbjct: 181 GHIVSHLERILGEEEIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSA 229


>gi|32451662|gb|AAH54598.1| Rfc4 protein [Danio rerio]
          Length = 202

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 50/135 (37%), Gaps = 26/135 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+ ++E   Q E  + LK  +E A      L ++LF GPPG GKT+     AR
Sbjct: 34  PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGAD-----LPNLLFYGPPGTGKTSTILAAAR 88

Query: 77  E------LGVNFRSTSGP------VIAKAGDLAALLTNLEDRD---------VLFIDEIH 115
           E              +        V+ +     A LT    R          ++ +DE  
Sbjct: 89  ELYGPDLYRQRVLELNASDERGIQVVREKVKRFAQLTVAGTRPDGKTCPPFKIIILDEAD 148

Query: 116 RLSIIVEEILYPAME 130
            ++   +  L   ME
Sbjct: 149 SMTSAAQAALRRTME 163


>gi|61651808|ref|NP_001013344.1| replication factor C subunit 2 [Danio rerio]
 gi|60477744|gb|AAH90779.1| Zgc:110810 [Danio rerio]
 gi|182890088|gb|AAI64018.1| Zgc:110810 protein [Danio rerio]
          Length = 349

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 80/227 (35%), Gaps = 38/227 (16%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   +   RP  L E  G  E  S L+VF     AR   + +++  GPPG GKTT    +
Sbjct: 30  ELPWVEKYRPLKLNEIVGNEETVSRLEVF-----AREGNVPNIIIAGPPGTGKTTSILCL 84

Query: 75  AR------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIHRLSII 120
           AR            EL  +       V  K    A     L      ++ +DE   ++  
Sbjct: 85  ARALLGPAMKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDG 144

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            ++ L   ME +                   +RF    A      +  P+Q R  + +R 
Sbjct: 145 AQQALRRTMEIYSKT----------------TRF--ALACNASDKIIEPIQSRCAV-LRY 185

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
           +    E +   +    +   L VT++    I   ++G  R A   L+
Sbjct: 186 SKLRDEQIMMRLTEVVEKENLHVTNDGLEAIIFTAQGDMRQALNNLQ 232


>gi|14600469|ref|NP_146984.1| hypothetical protein APE_0127 [Aeropyrum pernix K1]
 gi|5103517|dbj|BAA79038.1| conserved hypothetical protein MoxR [Aeropyrum pernix K1]
          Length = 314

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 53/229 (23%), Positives = 87/229 (37%), Gaps = 12/229 (5%)

Query: 44  IEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL 103
           ++ A A   A  H+L  G PG+ KTTLA+ +A   G+ F            D+      +
Sbjct: 34  VKLALATMIAKGHLLVEGVPGVAKTTLAKALAGAFGLRFSRIQFTPDTLPSDVIGTHVYV 93

Query: 104 EDRDVL----------FIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSR 153
            +  V             DE++R +   +     AM++ Q+  + GE     S  I L+ 
Sbjct: 94  GNGFVFRRGPVFANVVLADEVNRANPRTQSAFLEAMQEGQVT-VWGETHRLPSPFIVLAT 152

Query: 154 FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAM 213
              I     V  L     DRF   IRL +    +   I+++G ++  L V   A+ E   
Sbjct: 153 MNPIEL-EGVYPLPEAQLDRFMARIRLGYPTRVEEIKIIEKGDEVEDLNVEPAASPEDLK 211

Query: 214 RSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQ 262
           R + T R      + V   A++        E+   A  R  I  +   +
Sbjct: 212 RLQDTARRIYVDRKLVEYIADIVRETRRIEEVEIGASPRAGIHILKLSR 260


>gi|148272079|ref|YP_001221640.1| DNA polymerase III subunits gamma and tau [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147830009|emb|CAN00937.1| DNA polymerase III gamma and tau subunit [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 826

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 58/303 (19%), Positives = 104/303 (34%), Gaps = 33/303 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP    E  GQ +    L+  +   +         LF GP G GKTT A+++AR
Sbjct: 4   ALYRRYRPENFAELIGQTQVTDPLRTALRTNRVNHAY----LFSGPRGCGKTTSARILAR 59

Query: 77  ELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE------EILYPA 128
            L      T  P  V     +L+         DV+ ID      +          +  PA
Sbjct: 60  CLNCAEGPTDTPCGVCPSCVELS--RDGSGSLDVVEIDAASHNGVDDARDIRERAVFAPA 117

Query: 129 MEDFQLDLMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            + +++ ++         G     + V+        I ATT    +   ++ R       
Sbjct: 118 RDRYKIFILDEAHMVTPQGFNALLKIVEEPPEHVKFIFATTEPDKVIGTIRSR-THHYPF 176

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
                  +   V+  ++   + V       +     G+ R    LL ++     +A ++ 
Sbjct: 177 RLVPPAQMLDYVEHLSREESVQVAPGVLPLVVRAGGGSVRDTLSLLDQL-----IAGSED 231

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARN-FGGGPVGIETISAGLSEPRDAIEDL 299
            + E   A  L         D+     +  +AR+   G   G++ +     +PR  +EDL
Sbjct: 232 ESVEYERAVALLGYTHAALLDE----VIDAVARHDAAGAFAGVDRVIQTGQDPRRFVEDL 287

Query: 300 IEP 302
           +E 
Sbjct: 288 LER 290


>gi|256071912|ref|XP_002572282.1| PIM1 peptidase (S16 family) [Schistosoma mansoni]
 gi|238657437|emb|CAZ28513.1| PIM1 peptidase (S16 family) [Schistosoma mansoni]
          Length = 1036

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 73/192 (38%), Gaps = 33/192 (17%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI  ++ +      +L F GPPG+GKT++A  +AR L   +   S
Sbjct: 528 EDHYGMDDVKKRILEFIAVSQLKGSTQGKILCFCGPPGVGKTSIANSIARALNRKYFRFS 587

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              ++   ++                        +  ++ IDEI +L    +        
Sbjct: 588 VGGMSDVSEIKGHRRTYVGAMPGKIIQCLKKTKTENPLILIDEIDKLGRGWQGDPASALL 647

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V ++LSR   I    ++  +  PL+DR  +     +
Sbjct: 648 ELLDPEQNANFLD-------HYLDVTVDLSRVLFITTANQLDTIPEPLRDRMEVIEVSGY 700

Query: 183 YEIEDLKTIVQR 194
            E E L  I +R
Sbjct: 701 VEEEKLA-IAKR 711


>gi|238563644|ref|ZP_00438506.2| DNA polymerase III, subunits gamma and tau [Burkholderia mallei GB8
           horse 4]
 gi|238520253|gb|EEP83715.1| DNA polymerase III, subunits gamma and tau [Burkholderia mallei GB8
           horse 4]
          Length = 449

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 85/229 (37%), Gaps = 27/229 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+      GQ      L   ++  +     L H  LF G  G+GKTTL+++ A+ L   
Sbjct: 11  RPKDFASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAMEDFQL 134
              TS P     G   A     E R V +++        +  ++ ++E  +Y  ++    
Sbjct: 66  TGVTSQP----CGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             M+ E             ++++        I ATT    +   +  R  +   L     
Sbjct: 122 VYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPA 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
             + + ++R      +A   +A   +A  ++G+ R A  L  +   ++ 
Sbjct: 181 GHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSA 229


>gi|170755847|ref|YP_001783165.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum B1 str.
           Okra]
 gi|169121059|gb|ACA44895.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum B1 str.
           Okra]
          Length = 601

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 63/267 (23%), Positives = 97/267 (36%), Gaps = 31/267 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH-------VLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  E    L   ++  K+    +D        VL VGPPG GKT LA+ +A E 
Sbjct: 157 TFDDVAGADEEKEELAEIVDFLKSPKRYIDMGARIPKGVLLVGPPGTGKTLLAKAIAGEA 216

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG       V   A  +  L    +     ++FIDEI  +       L    +
Sbjct: 217 GVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNSPCIIFIDEIDAVGRQRGAGLGGGHD 276

Query: 131 DFQLD----LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
           + +      L+  +G  A    I      +IAAT R  +L   L    RF   I +   +
Sbjct: 277 EREQTLNQLLVEMDGFGANEGII------MIAATNRPDILDPALLRPGRFDRQIVVGAPD 330

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           I+  + I++  +K   LA               T      L+      A     + I  E
Sbjct: 331 IKGREAILKVHSKNKHLAEEISLGILAKRTPGFTGADLENLMNESALLAVRKRKELIDME 390

Query: 245 IADAALLRLAIDKMG----FDQLDLRY 267
             + A+ R+           D+ D + 
Sbjct: 391 DLEEAVTRVIAGPEKKSRVIDEEDRKL 417


>gi|167918645|ref|ZP_02505736.1| DNA polymerase III subunits gamma and tau [Burkholderia
           pseudomallei BCC215]
          Length = 423

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 85/229 (37%), Gaps = 27/229 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+      GQ      L   ++  +     L H  LF G  G+GKTTL+++ A+ L   
Sbjct: 11  RPKDFASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAMEDFQL 134
              TS P     G   A     E R V +++        +  ++ ++E  +Y  ++    
Sbjct: 66  TGVTSQP----CGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             M+ E             ++++        I ATT    +   +  R  +   L     
Sbjct: 122 VYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPA 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
             + + ++R      +A   +A   +A  ++G+ R A  L  +   ++ 
Sbjct: 181 GHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSA 229


>gi|39995205|ref|NP_951156.1| DNA polymerase III subunits gamma and tau [Geobacter sulfurreducens
           PCA]
 gi|39981967|gb|AAR33429.1| DNA polymerase III, gamma and tau subunits [Geobacter
           sulfurreducens PCA]
 gi|298504210|gb|ADI82933.1| DNA polymerase III, gamma and tau subunits [Geobacter
           sulfurreducens KN400]
          Length = 579

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/214 (19%), Positives = 70/214 (32%), Gaps = 45/214 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN- 81
           RP+T  + TGQ      L+  I++ +         LF G  G+GKT+ A+++A+ L    
Sbjct: 11  RPQTFSDLTGQEHVSRTLQNAIDSGRIAHA----FLFTGARGVGKTSSARILAKALNCEQ 66

Query: 82  -----------------------FRSTSGPVIAKAGDLAALLTNLE------DRDVLFID 112
                                       G       D+  L  N++         +  ID
Sbjct: 67  GMSPEPCNVCPACTEITAGTSVDVLEIDGASNTGVDDIRELRENVKYLPSRLRYKIFIID 126

Query: 113 EIHRLSIIVEEILYPAMED--FQLDLMVGEGPSARSVKINLSRFTLIAATTR-VGLLTNP 169
           E+H LS      L   +E+    +  +       +     LSR          +  +   
Sbjct: 127 EVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKLPITILSRCQRFDFRRIPLAKVVAR 186

Query: 170 LQ---DRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
           L+   DR GI I       E L  + ++G     
Sbjct: 187 LRYIVDREGISI-----SDESLAVVARKGDGSMR 215


>gi|50285721|ref|XP_445289.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49524593|emb|CAG58195.1| unnamed protein product [Candida glabrata]
          Length = 771

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 58/260 (22%), Positives = 96/260 (36%), Gaps = 33/260 (12%)

Query: 20  SLLR------PR-TLEEFTGQVEACSNLKVFIEA--------AKARAEALDHVLFVGPPG 64
           S +R      P+    +  GQ +    +K  I+         A    +A   +L  GPPG
Sbjct: 492 SAMREIFLEMPKVYWSDIGGQEDLKRKMKEMIQLPLEAADTFAALGIKAPKGILLYGPPG 551

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DVLFIDEIHR 116
             KT  A+ +A E GVNF +  GP I     G+    +  +  +       ++F DEI  
Sbjct: 552 CSKTLTAKALATESGVNFLAVKGPEIFNKYVGESERAIREIFRKARAASPSIIFFDEIDA 611

Query: 117 LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RF 174
           LS   +     A       L+             L+   ++AAT R   + + L    R 
Sbjct: 612 LSPDRDGSSTSAANHVLTSLLNEIDGVEE-----LNGVVIVAATNRPDEIDSALLRPGRL 666

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
              + ++  +      I+++  K   L  TDE   ++A R+ G       LL +    A 
Sbjct: 667 DRHVYVSPPDFNARLQILKKCTKNFDLDNTDELLNDLATRTEGCSGAEVVLLCQEAGLAA 726

Query: 235 VA---HAKTITREIADAALL 251
           +    H K +     + AL 
Sbjct: 727 IMDDIHTKKVDANHFEVALQ 746



 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 52/276 (18%), Positives = 93/276 (33%), Gaps = 31/276 (11%)

Query: 24  PRTL--EEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQV 73
           P++L  +   G       LK  I+    R E            +L  GPPG GKT L + 
Sbjct: 230 PQSLSYDAVGGLKCEIDLLKKAIDLPLHRPEIFADFGISPPKGILMHGPPGTGKTMLLRC 289

Query: 74  VARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEIL 125
           VA     +  S  GP I           L  +    +     ++FIDEI  ++       
Sbjct: 290 VANASNAHVLSIDGPSIVSKYLGETESKLREIFNEAKKYQPAIIFIDEIDSIAPNRANDD 349

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183
              +E   +  ++       S      R  +IAAT R   +   L+   RF   I +   
Sbjct: 350 SGEVESRVVATLLTLMDGTSSS----GRIAVIAATNRPNAVDPALRRPGRFDQEIEIGIP 405

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           +++    I+++  +         +  +I   +  T    G  L  +   + +   +    
Sbjct: 406 DVDARFDILKKQFEKISTDKHTLSEGDIKSIASKTHGYVGADLTALCRESVMKTIQKALT 465

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLT----MIARNF 275
           E +   +  L   K+G   ++   L      +   F
Sbjct: 466 ENSTTDMTEL---KVGITDVESAMLEIRPSAMREIF 498


>gi|291238242|ref|XP_002739039.1| PREDICTED: mitochondrial lon peptidase 1-like [Saccoglossus
           kowalevskii]
          Length = 995

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 51/280 (18%), Positives = 99/280 (35%), Gaps = 43/280 (15%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +  + +  FI  ++ +      +L F GPPG+GKT++A+ +A+ L   +   S
Sbjct: 542 EDHYGMEDVKNRILEFIAVSQLKKSTQGKILCFYGPPGVGKTSIAKSIAKALNRQYFRFS 601

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ ++    +        
Sbjct: 602 VGGMTDVAEIKGHRRTYVGAMPGKMIQCLKKTKTENPLVLIDEVDKIGKGYQGDPSSALL 661

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V  +LS+   I        +  PL+DR  + I ++ 
Sbjct: 662 ELLDPEQNHNFLD-------HYLDVPTDLSKVLFICTANVTHTIPEPLRDRMEM-IDVSG 713

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH-AKTI 241
           Y  E+   I    A+   +    E +   A +   T      L++     + V +  K I
Sbjct: 714 YVAEEKVNI----AEKYLIPQARENSGLTAEQLNITTDAMTTLIKAYCRESGVRNLQKHI 769

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVG 281
            +    AA   +  +    D           ++F G P+ 
Sbjct: 770 EKIYRKAAFKIINDEVASLDVTKDNL-----QDFVGKPLF 804


>gi|29841325|gb|AAP06357.1| similar to GenBank Accession Number BC003335 activator 1; 37 kDa
           subunit; replication factor C subunit)(RFC37)in Mus
           musculus [Schistosoma japonicum]
          Length = 364

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 51/240 (21%), Positives = 82/240 (34%), Gaps = 51/240 (21%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+T++E   Q E  S L+  I         L ++LF GPPG GKT+L   +AR
Sbjct: 26  PWVEKYRPKTIDEVAYQTEVVSVLRRCI-----GGSDLPNLLFYGPPGTGKTSLILALAR 80

Query: 77  ------------ELGVNFRSTSGPVIAKAGDLAAL---------------LTNLEDRDVL 109
                       EL  +       +  K    A +                TN+    ++
Sbjct: 81  QLFGPLYSERVLELNASDERGIVVIREKVKAFAHVAVSSSGSNTNSSGSSSTNIPPYKLI 140

Query: 110 FIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
            +DE   ++   +  L   ME              R+ +  L           V  +  P
Sbjct: 141 ILDEADSMTAPAQAALRRTME-----------TEMRTTRFCL-------TCNYVTRIIEP 182

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           +  R     R    + E  +  ++  A    L+VTDE    +    RG  R    +L+ V
Sbjct: 183 ITSRCA-KFRFRPLDNEIARARLRYIADAENLSVTDETLDHLLSLCRGDLRQGITMLQCV 241


>gi|169836410|ref|ZP_02869598.1| Holliday junction DNA helicase B [candidate division TM7
           single-cell isolate TM7a]
          Length = 62

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 42/57 (73%)

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
           +A V+A E+G N R TSGP I +AGDLA++LTNL+D D+LFIDEIHRLS      + 
Sbjct: 1   MASVIANEMGTNLRVTSGPAIERAGDLASILTNLQDNDILFIDEIHRLSRAESSWIL 57


>gi|76802176|ref|YP_327184.1| AAA-type ATPase (transitional ATPase homolog) [Natronomonas
           pharaonis DSM 2160]
 gi|76558041|emb|CAI49627.1| AAA-type ATPase (transitional ATPase homolog) [Natronomonas
           pharaonis DSM 2160]
          Length = 740

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 54/289 (18%), Positives = 101/289 (34%), Gaps = 30/289 (10%)

Query: 15  EDADISLLR------PR-TLEEFTGQVEACSNLKVFIE--------AAKARAEALDHVLF 59
            + D S +R      P+ + ++  G  EA   ++  +E         ++   E    VL 
Sbjct: 442 NEVDPSAMREVLVELPKVSWDDVGGLTEAKEQVQESVEWPMNAGEKFSRMGIEPPSGVLL 501

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDR------DVLFI 111
            GPPG GKT +A+ VA E   NF S  GP  +    G+    +     +       ++F 
Sbjct: 502 YGPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFRKARQVSPTIIFF 561

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+  L+      +   + +  ++ ++ E      +        +I AT R  ++   L 
Sbjct: 562 DELDSLAPGRGGEVGSNVSERVVNQLLTELDGLEEMD----DVMVIGATNRPDMIDPALI 617

Query: 172 D--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
              RF   + +   +++  + I++     T LA  D +  E+A  + G        + R 
Sbjct: 618 RSGRFDRLVMVGEPDLDGREKILRIHTGDTPLA-PDVSLRELAEMTDGYVGSDLESITRE 676

Query: 230 RDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
                +                 +   +         Y   I   F GG
Sbjct: 677 AAIEALREDDDAEAVEMRHFREAVESVRPTITDDIRNYYEQIEEEFRGG 725



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 53/230 (23%), Positives = 82/230 (35%), Gaps = 25/230 (10%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLT 101
           K   E    VL  GPPG GKT LA+ VA E   +F S +GP I           L  +  
Sbjct: 217 KLGIEPPQGVLLHGPPGTGKTLLAKAVANETSASFFSIAGPEIISKYYGESEQQLREIFE 276

Query: 102 NLEDR--DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA 159
           +  +    ++FIDE+  ++   E++           L+            +  +  +IAA
Sbjct: 277 DATEESPSIIFIDELDSIAPKREDVTGEVERRVVAQLLTM-----MDGLESRGQVIVIAA 331

Query: 160 TTRVGLLTNPLQ-----DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEI--- 211
           T RV  +   L+     DR       +    +++  I  RG  L      D+ A E    
Sbjct: 332 TNRVDSVDPALRRPGRFDREIEIGVPDETGRKEILQIHTRGMPLADDVDLDKMADETHGF 391

Query: 212 --AMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259
             A     T   A + LRR     E+   +          ++    D  G
Sbjct: 392 VGADIESLTKEAAMKALRRY--LPEIDLDEEDIPPSLIDRMIIKRQDFRG 439


>gi|259484950|tpe|CBF81608.1| TPA: intermembrane space AAA protease IAP-1 (AFU_orthologue;
           AFUA_4G11530) [Aspergillus nidulans FGSC A4]
          Length = 784

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 88/247 (35%), Gaps = 22/247 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G  EA   L+  +E        +    +    VL VGPPG GKT LA+ VA E 
Sbjct: 313 RFSDVHGCDEAKDELQELVEFLLNPERFSSLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 372

Query: 79  GVNFRSTSGPVIA------KAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F   SG           A  +  L      +   ++FIDE+  +     E    A  
Sbjct: 373 GVPFFYMSGSEFDEVYVGVGAKRVRELFNQARSKSPAIIFIDELDAIGAKRNER-DAAYV 431

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
              L+ ++ E               ++AAT    LL   L    RF   + ++  ++   
Sbjct: 432 KQTLNQLLTELDGFSQSTG----VIILAATNYPELLDKALTRPGRFDRKVVVDLPDVRGR 487

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             I++   K   ++   + A      S  +      L+ +   FA       +T +  D 
Sbjct: 488 MDILKHHMKNVQISTDVDVAVIARGTSGFSGADLENLVNQAAIFASRNKQSKVTPKDFDY 547

Query: 249 ALLRLAI 255
           A  ++ +
Sbjct: 548 AKDKIIM 554


>gi|156062848|ref|XP_001597346.1| hypothetical protein SS1G_01540 [Sclerotinia sclerotiorum 1980]
 gi|154696876|gb|EDN96614.1| hypothetical protein SS1G_01540 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 390

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/245 (17%), Positives = 83/245 (33%), Gaps = 33/245 (13%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
                   +   RP TLE+ +G  +  + +  F++  +     L H+LF GPPG GKT+ 
Sbjct: 40  EAEDSLPWVEKYRPDTLEDVSGHQDILATINKFVDTNR-----LPHLLFYGPPGTGKTST 94

Query: 71  AQVVAR-------------------ELGVNFRSTSGPVIAKAGDLAALLTNL---EDRDV 108
              +AR                   + G+          A    + ++ +         +
Sbjct: 95  ILALARRIYGPKNMRQMVLELNASDDRGIEVVREQIKTFASTKQIFSMNSATVSPGAYKL 154

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLD--LMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
           + +DE   ++   +  L   ME +  +    V    + +     LSR T    +      
Sbjct: 155 IILDEADAMTSTAQMALRRVMEKYTANTRFCVIANYTHKLSPALLSRCTRFRFSPLKESD 214

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLA---VTDEAACEIAMRSRGTPRIAG 223
              L D+  +   +     E    +V+        A   +    A    +  +GTP++  
Sbjct: 215 IRVLVDKVIMEENVQI-NAEATDALVRLSKGDMRRALNVLQACHASSTPIHIKGTPKMEE 273

Query: 224 RLLRR 228
           + + R
Sbjct: 274 KDIVR 278


>gi|255552465|ref|XP_002517276.1| calmodulin-binding protein, putative [Ricinus communis]
 gi|223543539|gb|EEF45069.1| calmodulin-binding protein, putative [Ricinus communis]
          Length = 1094

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 59/298 (19%), Positives = 109/298 (36%), Gaps = 40/298 (13%)

Query: 15   EDADISLL--RPRTLEEFT------------GQVEACSNLKVFIEAAKARAEAL------ 54
            ED + + +  RP  + E              GQ E  + L   +E  +   +A       
Sbjct: 713  EDFEKARMKVRPSAMREVILEVPKVNWEDVGGQKEVKAQLMEAVEWPQKHQDAFQRIGTR 772

Query: 55   --DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLAALLTNLEDR---- 106
                VL  GPPG  KT +A+ VA E G+NF +  GP +     G+    + +L  +    
Sbjct: 773  PPTGVLMFGPPGCSKTLMARAVASEAGLNFFAVKGPELFSKWVGESEKAVRSLFAKARAN 832

Query: 107  --DVLFIDEIHRLSIIV-EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
               ++F DEI  L++I  +E    ++ D  +  ++ E              T+IAAT R 
Sbjct: 833  APSIIFFDEIDGLAVIRGKENDGVSVSDRVMTQLLVELDGLHQRV----NVTVIAATNRP 888

Query: 164  GLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRI 221
              +   L    RF   + +      D + I +   +    +          +    T   
Sbjct: 889  DKIDPALLRPGRFDRLLYVGPPNATDREAIFRIHLRKIPCSSDVSIKELSHLTEGCTGAD 948

Query: 222  AGRLLRRVRDFA--EVAHAKTITREIADAALLRLA-IDKMGFDQLDLRYLTMIARNFG 276
               + R     A  E   A  +T +    A+ +   ++   +++L  ++  ++  N  
Sbjct: 949  ISFICREAAMAAIEECIDASEVTMKHTRTAIRQAKPLNTESYNELSAKFQRLVHSNHR 1006



 Score = 42.8 bits (99), Expect = 0.076,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 8/75 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DV 108
           VL  GP G GKT+LA++ A + GVN  S +GP I           L  +  +       V
Sbjct: 455 VLLHGPTGTGKTSLARLCALDAGVNLLSVNGPEIISQYHGESEQALHEVFASASRGAPAV 514

Query: 109 LFIDEIHRLSIIVEE 123
           +FIDE+  ++   ++
Sbjct: 515 VFIDELDSIAPARKD 529


>gi|197294332|ref|YP_001798873.1| Putative IMP dehydrogenase/GMP reductase [Candidatus Phytoplasma
           australiense]
 gi|171853659|emb|CAM11538.1| Putative IMP dehydrogenase/GMP reductase [Candidatus Phytoplasma
           australiense]
          Length = 713

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 93/249 (37%), Gaps = 22/249 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDHV--------LFVGPPGLGKTTLAQVVARE 77
           T ++  G       L+  I   K     L +         L  GPPG GKT L + ++ E
Sbjct: 278 TFKDVYGMESEKEELEDLIFYFKESNNNLVNFDKIRPKGYLLYGPPGTGKTFLLKALSNE 337

Query: 78  LGVNF------RSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAM 129
               F      +     V     +   +    E  D+ ++FIDEI  ++   ++      
Sbjct: 338 CNAYFIEFEPSKLDKTYVGEGVEEWEKIWMEAERHDKTIIFIDEISGMANREDKNSNKTS 397

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
            +   +++       RS K    +  L+ AT  +  +   L+ RF   I+++  + E+++
Sbjct: 398 INIVNNILTKLDGFNRSDK----KIVLMGATNHLDQIDKALRSRFSKEIKIDLIKEEEIE 453

Query: 190 TIVQRGAKLTGLAVTDE-AACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             ++   +   ++        EIA R +G    + R L  + + A     K  T      
Sbjct: 454 GFLKFLIEPYQISYHTYLHLKEIANRCKGK-NYSNRDLTTIINDAYNKTNKFKTLNPKHE 512

Query: 249 ALLRLAIDK 257
            +L   +D+
Sbjct: 513 VMLPSDLDE 521


>gi|119618522|gb|EAW98116.1| hCG1812172, isoform CRA_b [Homo sapiens]
          Length = 153

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 44/123 (35%), Gaps = 19/123 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA- 75
             +   RP+TL +     +  S ++ FI       + L H+L  GPPG GKT+     A 
Sbjct: 21  PWVEKYRPQTLNDLISHQDILSTIQKFI-----NEDRLPHLLLYGPPGTGKTSTILACAK 75

Query: 76  -----RELGVNFRSTSGPVIAKAGDLAA-LLTNLEDRDVL-------FIDEIHRLSIIVE 122
                +E G      +         +   +L+    R +         +DE   ++   +
Sbjct: 76  QLYKDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQ 135

Query: 123 EIL 125
             L
Sbjct: 136 NAL 138


>gi|15679029|ref|NP_276146.1| ATP-dependent 26S protease regulatory subunit 8
           [Methanothermobacter thermautotrophicus str. Delta H]
 gi|3334301|sp|O27092|PRS2_METTH RecName: Full=Putative 26S protease regulatory subunit homolog
           MTH_1011
 gi|2622113|gb|AAB85507.1| ATP-dependent 26S protease regulatory subunit 8
           [Methanothermobacter thermautotrophicus str. Delta H]
          Length = 372

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 51/241 (21%), Positives = 91/241 (37%), Gaps = 17/241 (7%)

Query: 26  TLEEFTGQVEACSNLKVFIE----AAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           T+++  GQ +A    ++ ++      + R  A  +VLF G PG GKT LA+ +A EL V 
Sbjct: 125 TMDDVIGQEDAKIKCRIIMKYLEDPDRFRDWAPRNVLFHGSPGTGKTMLAKSLANELKVP 184

Query: 82  FRSTSGPVI--AKAGDLAALLTNLED---RD---VLFIDEIHRLSIIVEEILYPAMEDFQ 133
                   +     GD A  +  L +   +    V+FIDE+  + +              
Sbjct: 185 LYLIKATSLIGEHVGDGARQIHELYELASKTAPSVIFIDEMDAIGLDRRYQSLRGDVSEV 244

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           ++ ++ E                I AT    LL   ++ RF   I     + E+ K +++
Sbjct: 245 VNALLTEMDGINQNWG----VVTIGATNNPELLDKAIRSRFEEEIEFKLPDDEERKLMLE 300

Query: 194 RGAKLTGLAVT-DEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           +  +   L V           R      I  R+L+     A    ++++  E  + AL  
Sbjct: 301 KYIETMPLKVDFPVDKLVKLTREMSGRDIKDRVLKTALHRAIAEDSESVRAEHIEYALKE 360

Query: 253 L 253
            
Sbjct: 361 R 361


>gi|325270324|ref|ZP_08136929.1| ATP-dependent metalloprotease FtsH [Prevotella multiformis DSM
           16608]
 gi|324987268|gb|EGC19246.1| ATP-dependent metalloprotease FtsH [Prevotella multiformis DSM
           16608]
          Length = 676

 Score = 60.9 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 62/265 (23%), Positives = 109/265 (41%), Gaps = 33/265 (12%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ  A   ++  +E  K          +     L +GPPG GKT LA+ VA E 
Sbjct: 190 TFKDVAGQTGAKQEVQEIVEFLKNPKKYTDLGGKIPKGALLIGPPGTGKTLLAKAVAGEA 249

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM- 129
           GV F S SG       V   A  +  +    +++   ++FIDEI  +     +   PAM 
Sbjct: 250 GVPFFSMSGSDFVEMFVGVGASRVRDVFRQAKEKAPCIIFIDEIDAVGRARSKN--PAMG 307

Query: 130 ----EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183
                +  L+ ++ E     +     S   ++AAT RV +L   L    RF   I ++  
Sbjct: 308 GNDERENTLNALLTEMDGFGTN----SGVIVLAATNRVDMLDKALLRAGRFDRQIHVDLP 363

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           ++ + K I Q   +   L        +I + +R TP  +G  +  V + A +  A+  ++
Sbjct: 364 DLTERKAIFQVHMRPLKLERN----LDIDLLARQTPGFSGADIANVCNEAALIAARHDSK 419

Query: 244 EIADAA-LLRLAIDKMGFDQLDLRY 267
           +++    L  +     G ++     
Sbjct: 420 DVSKQDFLDAVDRIVGGLEKKTKVM 444


>gi|225450599|ref|XP_002277956.1| PREDICTED: similar to putative LON3 protease [Vitis vinifera]
          Length = 978

 Score = 60.9 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 89/257 (34%), Gaps = 38/257 (14%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI   K R  +   ++   GPPG+GKT++ + +AR L   F   S
Sbjct: 433 EDHYGLTDVKERILEFIAVGKLRGSSQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFS 492

Query: 87  GPVIAKAGDLAALLTNLED----------------RDVLFIDEIHRLSI--------IVE 122
              +A   ++                           ++ IDEI +L           + 
Sbjct: 493 VGGLADVAEIKGHRRTYIGAMPGKMVQCLKNVGTANPLVLIDEIDKLGKGHAGDPASALL 552

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD  +        V I+LS+   +     V ++ NPL DR  +     +
Sbjct: 553 ELLDPEQNANFLDHYL-------DVPIDLSKVLFVCTANIVEMIPNPLLDRMEVISVAGY 605

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
              E +       A+      T EA      ++  T      L+      A V + +   
Sbjct: 606 ITDEKMH-----IARDYLEKNTREACGIKPEQAELTDAALLDLIENYCREAGVRNLQKQI 660

Query: 243 REIADA-ALLRLAIDKM 258
            +I    AL  +  + +
Sbjct: 661 EKIFRKIALRLVRQEAL 677


>gi|167815434|ref|ZP_02447114.1| DNA polymerase III subunits gamma and tau [Burkholderia
           pseudomallei 91]
          Length = 378

 Score = 60.9 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 85/229 (37%), Gaps = 27/229 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+      GQ      L   ++  +     L H  LF G  G+GKTTL+++ A+ L   
Sbjct: 11  RPKDFASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAMEDFQL 134
              TS P     G   A     E R V +++        +  ++ ++E  +Y  ++    
Sbjct: 66  TGVTSQP----CGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             M+ E             ++++        I ATT    +   +  R  +   L     
Sbjct: 122 VYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPA 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
             + + ++R      +A   +A   +A  ++G+ R A  L  +   ++ 
Sbjct: 181 GHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSA 229


>gi|315126896|ref|YP_004068899.1| DnaX, DNA polymerase III, gamma/tau subunits [Pseudoalteromonas sp.
           SM9913]
 gi|315015410|gb|ADT68748.1| putative DnaX, DNA polymerase III, gamma/tau subunits
           [Pseudoalteromonas sp. SM9913]
          Length = 777

 Score = 60.9 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 53/264 (20%), Positives = 81/264 (30%), Gaps = 57/264 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV-- 80
           RP+T  E  GQ       K  +  A  +       LF G  G+GKTT+A++ A+ L    
Sbjct: 11  RPQTFHELVGQSHV----KQALVNALNQNRLHHAYLFTGTRGVGKTTIARIFAKSLNCDE 66

Query: 81  ----------------------NFRSTSGPVIAKAGDLAALLTNLE------DRDVLFID 112
                                 +          K  D   +L N++         V  ID
Sbjct: 67  GISATPCGQCSSCVDIEAGRYIDLLEIDAASRTKVEDTREILDNVQYAPTRGRYKVYLID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS      L   +E+                         + ATT    L   +  
Sbjct: 127 EVHMLSKHSFNALLKTLEE------------------PPEHVKFLLATTDPQKLPVTILS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R  +   LN     ++K  ++       L   ++A   IA  + G+ R A  L     D 
Sbjct: 169 RC-LQFNLNALSQAEIKQQLEHVLTQEQLNFDNDALSIIAKAADGSMRDALSL----TDQ 223

Query: 233 AEVAHAKTITREIADAALLRLAID 256
           A       I  +   A L  +   
Sbjct: 224 AIAQTNGDINNQAVQAMLGLMDTH 247


>gi|288959353|ref|YP_003449694.1| DNA polymerase III subunit gamma/tau [Azospirillum sp. B510]
 gi|288911661|dbj|BAI73150.1| DNA polymerase III subunit gamma/tau [Azospirillum sp. B510]
          Length = 636

 Score = 60.9 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 51/248 (20%), Positives = 87/248 (35%), Gaps = 22/248 (8%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+T +E  GQ      L   I++ +         +  G  G+GKTT A+++AR L
Sbjct: 29  ARKYRPKTFDELIGQDALVRTLTNAIQSGRIAQA----FMLTGVRGVGKTTTARIIARAL 84

Query: 79  GVN-FRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEIL-----YPAME 130
                    GP ++  G         EDR  DV+ +D      +     +     Y  + 
Sbjct: 85  NCTGPDGNGGPTVSPCGVCDNCRAIAEDRHVDVMEMDAASHTGVDDIREIIDGVRYSPVS 144

Query: 131 DFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
                 ++ E             ++++   S    + ATT +  +   +  R      L 
Sbjct: 145 ARYKLYIIDEVHMLSKSAFNALLKTLEEPPSHVKFVFATTEIRKVPVTVLSRCQ-RFDLR 203

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
             + + LK    R   L G  +  +AA  IA  + G+ R    LL +    A        
Sbjct: 204 RVDAQVLKEHFTRVTALEGADIEGDAAALIARAADGSVRDGLSLLDQAIALAAGTVTAQQ 263

Query: 242 TREIADAA 249
            R++   A
Sbjct: 264 VRDMLGLA 271


>gi|58584691|ref|YP_198264.1| DNA polymerase III, gamma/tau subunit [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
 gi|58419007|gb|AAW71022.1| DNA polymerase III, gamma/tau subunit [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
          Length = 494

 Score = 60.9 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 52/253 (20%), Positives = 90/253 (35%), Gaps = 34/253 (13%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP + ++  GQ          +E A         +L  G  G+GKTT A+++A  L  + 
Sbjct: 8   RPGSFKDLVGQDILV----RILENAFTLNRIPQSILLSGASGVGKTTTARIIALCLNCS- 62

Query: 83  RSTSGPVIAKAGDLAALLT--NLEDRDVLFIDEIHRLSIIVEEIL-----YPAMEDFQLD 135
               GP     G     LT  N    DV+ ID     S+   +++     Y  +      
Sbjct: 63  ---LGPTFEPCGSCKNCLTIKNSSHPDVIEIDAASHTSVDDIKVILGDICYSPISSKFKV 119

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             ++++        I ATT +  +   +  R     R + Y I 
Sbjct: 120 YIIDEVHMLSSSAFNALLKTLEEPPPSVKFILATTEIKKIPITIIARCQ---RFDLYNI- 175

Query: 187 DLKTIVQR---GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            +  IV+R    A+     +  EA+  IA  S  + R A  L+ +   +        I+ 
Sbjct: 176 PVAKIVERLNDIAQRESYFIEKEASELIARHSGNSMRNALFLMNQAVLY---NKGGVIST 232

Query: 244 EIADAALLRLAID 256
           +     L  +  D
Sbjct: 233 KSVMDILGLVDKD 245


>gi|84516011|ref|ZP_01003372.1| DNA polymerase III subunits gamma and tau [Loktanella vestfoldensis
           SKA53]
 gi|84510453|gb|EAQ06909.1| DNA polymerase III subunits gamma and tau [Loktanella vestfoldensis
           SKA53]
          Length = 572

 Score = 60.9 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 51/258 (19%), Positives = 87/258 (33%), Gaps = 26/258 (10%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
            +  +        RP T  +  GQ      L+    A +         +  G  G GKTT
Sbjct: 2   TDQPRYQVLARKYRPETFADLVGQDAMVRTLRNAFAADRIAQA----FMMTGIRGTGKTT 57

Query: 70  LAQVVARELGV-NFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEIL- 125
            A+++A+ +       T GP     G     +  +E R  DV+ +D   R  +     + 
Sbjct: 58  TARIIAKGMNCIGPDGTGGPTTDPCGTCEHCVAIMEGRHVDVMEMDAASRTGVGDIREII 117

Query: 126 ----YPAMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
               Y A        ++ E             ++++        I ATT +  +   +  
Sbjct: 118 DSVHYRAASARYKIYIIDEVHMLSKNAFNALLKTLEEPPEHVKFIFATTEIRQVPVTVLS 177

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R      L   E E    ++++ A   G  ++D+A   I   + G+ R A  LL    D 
Sbjct: 178 RCQ-RFDLRRIEPETQIALLRKIATAEGAQISDDALALITRAAEGSARDAQSLL----DQ 232

Query: 233 AEVAHAKTITREIADAAL 250
           A    A   +     A L
Sbjct: 233 AISHGAGETSAAQVRAML 250


>gi|294678278|ref|YP_003578893.1| DNA polymerase III subunit gamma/tau [Rhodobacter capsulatus SB
           1003]
 gi|294477098|gb|ADE86486.1| DNA polymerase III, gamma/tau subunit [Rhodobacter capsulatus SB
           1003]
          Length = 589

 Score = 60.9 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 53/267 (19%), Positives = 90/267 (33%), Gaps = 27/267 (10%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M D +   +   S         RP T  +  GQ      LK    A++         +  
Sbjct: 1   MTDADSP-AATSSGYQVLARKYRPATFADLIGQEAMVRTLKNAFAASRIAQA----FIMT 55

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAK---AGDLAALLTNLEDRDVLFIDEIHRL 117
           G  G GKTT A+++A+ L       +G    +     +    +      DVL +D   R 
Sbjct: 56  GIRGTGKTTTARIIAKGLNCIGPDGTGQPTTEPCLVCEHCRAIAEGRHVDVLEMDAASRT 115

Query: 118 SI-----IVEEILYPAMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRV 163
            +     I+E + Y A        ++ E             ++++   +    I ATT +
Sbjct: 116 GVGDIREIIESVNYRAASARYKVYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEI 175

Query: 164 GLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAG 223
             +   +  R      L   E E +   + + A      + ++A   I   + G+ R A 
Sbjct: 176 RKVPVTVLSRCQ-RFDLRRIEPEVMINHLSKVATKENAQIAEDALALITRAAEGSVRDAM 234

Query: 224 RLLRRVRDFAEVAHAKTITREIADAAL 250
            LL    D A    A   T +   A L
Sbjct: 235 SLL----DQAISHGAGETTADQVRAML 257


>gi|213409838|ref|XP_002175689.1| ribosome biogenesis ATPase RIX7 [Schizosaccharomyces japonicus
           yFS275]
 gi|212003736|gb|EEB09396.1| ribosome biogenesis ATPase RIX7 [Schizosaccharomyces japonicus
           yFS275]
          Length = 782

 Score = 60.9 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 63/288 (21%), Positives = 100/288 (34%), Gaps = 37/288 (12%)

Query: 23  RPR----TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTL 70
           RP+    TL++  G  +  + +   I       E            VL  GPPG GKT L
Sbjct: 164 RPKAMNVTLDDVGGLDDCINEVLELIAMPIKHPEVYLFTGIQPPRGVLLHGPPGCGKTML 223

Query: 71  AQVVARELGVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           A  +A ELGV F S S P I          K  D+     ++    ++FIDEI  ++   
Sbjct: 224 ANALANELGVPFISISAPSIVSGMSGESEKKVRDVFEEAKSMAP-CLMFIDEIDAVTPKR 282

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ-----DRFGI 176
            E     ME   +   +         K       ++ AT R   L + L+     DR   
Sbjct: 283 -ESAQREMERRIVAQFLTCMDDLSFEKTEGKPVIVMGATNRPDALDSALRRAGRFDREIC 341

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDE---------AACEIAMRSRGTPRIAGRLLR 227
               +    E +   + RG +L+G     +          A   A+ +        R+ R
Sbjct: 342 LTVPDELAREKILRTMSRGLRLSGEFDFRKLAKRTPGFVGADLKALTTAAGIVAIKRIYR 401

Query: 228 RVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNF 275
           ++    + A + +      D  L       M  D  +   L+ I  +F
Sbjct: 402 QLILQKDAASSSSPNTPSIDQDLTSGDDVAMELDTTNPPSLSSIIHHF 449



 Score = 47.0 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 46/194 (23%), Positives = 69/194 (35%), Gaps = 16/194 (8%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--------AKAGDLAALLTNLE 104
           A   VL  GPPG GKT LA+ VA E   NF S  GP +         +A     L     
Sbjct: 530 APAGVLLWGPPGCGKTLLAKAVANESKANFISVRGPELLNKFVGESERAVRQVFLRARAS 589

Query: 105 DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164
              ++F DE+  L    ++ L  +       L+            +     +IAAT R  
Sbjct: 590 APCIIFFDELDALVPRRDDSLSESSSRIVNTLLTELDGLN-----DRKGVYVIAATNRPD 644

Query: 165 LLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
           ++   +    R    + ++     +   I++   K T L   D     +A   R      
Sbjct: 645 IIDPAMIRPGRLDKTLLVDLPTANERAEILKTITKKTPLH-EDVNLETLAHDERCVNFSG 703

Query: 223 GRLLRRVRDFAEVA 236
             L   VR+ A  A
Sbjct: 704 ADLAALVRESAVTA 717


>gi|330801691|ref|XP_003288858.1| hypothetical protein DICPUDRAFT_153140 [Dictyostelium purpureum]
 gi|325081104|gb|EGC34633.1| hypothetical protein DICPUDRAFT_153140 [Dictyostelium purpureum]
          Length = 348

 Score = 60.9 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/230 (15%), Positives = 72/230 (31%), Gaps = 48/230 (20%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+++ +     +  +           ++  L H+LF GPPG GKT+  Q +AR
Sbjct: 28  PWVEKYRPKSINDLIAHDDIIA----------TKSNTLPHLLFYGPPGTGKTSTIQAIAR 77

Query: 77  -----ELGVNFRSTSGPVIAKAGDLAALLTNLE----------DRDVLFIDEIHRLSIIV 121
                         +         +   +                 ++ +DE   ++ I 
Sbjct: 78  KLYGENYSRMVLELNASDDRGIDVVREQIKTFASSMFFFNSTVPYKLIILDEADSMTNIA 137

Query: 122 EEILYPAMEDFQLD--LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +  L   +E +       +      + +    SR T                 RF     
Sbjct: 138 QTALRRVIEKYTKTTRFCIVCNYVVKIIPALQSRCT-----------------RFRFKPL 180

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
            +    E LK I+    K+  + + +E    +     G  R +  +L+ V
Sbjct: 181 PDSATEERLKEIL----KIENVQIDEEGMKAVLFLGDGDMRKSLNILQSV 226


>gi|296089772|emb|CBI39591.3| unnamed protein product [Vitis vinifera]
          Length = 964

 Score = 60.9 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 89/257 (34%), Gaps = 38/257 (14%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI   K R  +   ++   GPPG+GKT++ + +AR L   F   S
Sbjct: 433 EDHYGLTDVKERILEFIAVGKLRGSSQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFS 492

Query: 87  GPVIAKAGDLAALLTNLED----------------RDVLFIDEIHRLSI--------IVE 122
              +A   ++                           ++ IDEI +L           + 
Sbjct: 493 VGGLADVAEIKGHRRTYIGAMPGKMVQCLKNVGTANPLVLIDEIDKLGKGHAGDPASALL 552

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD  +        V I+LS+   +     V ++ NPL DR  +     +
Sbjct: 553 ELLDPEQNANFLDHYL-------DVPIDLSKVLFVCTANIVEMIPNPLLDRMEVISVAGY 605

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
              E +       A+      T EA      ++  T      L+      A V + +   
Sbjct: 606 ITDEKMH-----IARDYLEKNTREACGIKPEQAELTDAALLDLIENYCREAGVRNLQKQI 660

Query: 243 REIADA-ALLRLAIDKM 258
            +I    AL  +  + +
Sbjct: 661 EKIFRKIALRLVRQEAL 677


>gi|167823844|ref|ZP_02455315.1| DNA polymerase III subunits gamma and tau [Burkholderia
           pseudomallei 9]
          Length = 381

 Score = 60.9 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 85/229 (37%), Gaps = 27/229 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+      GQ      L   ++  +     L H  LF G  G+GKTTL+++ A+ L   
Sbjct: 11  RPKDFASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAMEDFQL 134
              TS P     G   A     E R V +++        +  ++ ++E  +Y  ++    
Sbjct: 66  TGVTSQP----CGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             M+ E             ++++        I ATT    +   +  R  +   L     
Sbjct: 122 VYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPA 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
             + + ++R      +A   +A   +A  ++G+ R A  L  +   ++ 
Sbjct: 181 GHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSA 229


>gi|90580017|ref|ZP_01235825.1| DNA polymerase III subunits gamma and tau [Vibrio angustum S14]
 gi|90438902|gb|EAS64085.1| DNA polymerase III subunits gamma and tau [Vibrio angustum S14]
          Length = 741

 Score = 60.9 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 51/266 (19%), Positives = 81/266 (30%), Gaps = 59/266 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP    +  GQ    + L   +         L H  LF G  G+GKTT+A++ A+ L   
Sbjct: 11  RPSQFSDVVGQSHVLTALGNALT-----QNRLHHAYLFSGTRGVGKTTIARIFAKGLNCE 65

Query: 82  ------------------------FRSTSGPVIAKAGDLAALLTNLEDRD------VLFI 111
                                             K  D   LL N++ +       V  I
Sbjct: 66  EGITATPCGKCATCREIDEGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         I ATT    L   + 
Sbjct: 126 DEVHMLSRHSFNALLKTLEE------------------PPEYVKFILATTDPQKLPVTIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L   + + ++T ++       +    +A   +A  + G+ R A  L     D
Sbjct: 168 SRC-LQFHLKHLDHQQIQTQLETVLTEEKVEYEAKALSLLARAAEGSMRDALSL----TD 222

Query: 232 FAEVAHAKTITREIADAALLRLAIDK 257
            A       +  +     L  L  D+
Sbjct: 223 QAIALGNGQVGIDNVATMLGTLDTDQ 248


>gi|167893928|ref|ZP_02481330.1| DNA polymerase III subunits gamma and tau [Burkholderia
           pseudomallei 7894]
          Length = 387

 Score = 60.9 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 85/229 (37%), Gaps = 27/229 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+      GQ      L   ++  +     L H  LF G  G+GKTTL+++ A+ L   
Sbjct: 11  RPKDFASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAMEDFQL 134
              TS P     G   A     E R V +++        +  ++ ++E  +Y  ++    
Sbjct: 66  TGVTSQP----CGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             M+ E             ++++        I ATT    +   +  R  +   L     
Sbjct: 122 VYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPA 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
             + + ++R      +A   +A   +A  ++G+ R A  L  +   ++ 
Sbjct: 181 GHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSA 229


>gi|167836377|ref|ZP_02463260.1| DNA polymerase III subunits gamma and tau [Burkholderia
           thailandensis MSMB43]
          Length = 376

 Score = 60.9 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 85/229 (37%), Gaps = 27/229 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+      GQ      L   ++  +     L H  LF G  G+GKTTL+++ A+ L   
Sbjct: 11  RPKDFASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAMEDFQL 134
              TS P     G   A     E R V +++        +  ++ ++E  +Y  ++    
Sbjct: 66  TGVTSQP----CGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             M+ E             ++++        I ATT    +   +  R  +   L     
Sbjct: 122 VYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPA 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
             + + ++R      +A   +A   +A  ++G+ R A  L  +   ++ 
Sbjct: 181 GHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSA 229


>gi|167738244|ref|ZP_02411018.1| DNA polymerase III subunits gamma and tau [Burkholderia
           pseudomallei 14]
          Length = 380

 Score = 60.9 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 85/229 (37%), Gaps = 27/229 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+      GQ      L   ++  +     L H  LF G  G+GKTTL+++ A+ L   
Sbjct: 11  RPKDFASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAMEDFQL 134
              TS P     G   A     E R V +++        +  ++ ++E  +Y  ++    
Sbjct: 66  TGVTSQP----CGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             M+ E             ++++        I ATT    +   +  R  +   L     
Sbjct: 122 VYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPA 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
             + + ++R      +A   +A   +A  ++G+ R A  L  +   ++ 
Sbjct: 181 GHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSA 229


>gi|167719247|ref|ZP_02402483.1| DNA polymerase III subunits gamma and tau [Burkholderia
           pseudomallei DM98]
          Length = 376

 Score = 60.9 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 85/229 (37%), Gaps = 27/229 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+      GQ      L   ++  +     L H  LF G  G+GKTTL+++ A+ L   
Sbjct: 11  RPKDFASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAMEDFQL 134
              TS P     G   A     E R V +++        +  ++ ++E  +Y  ++    
Sbjct: 66  TGVTSQP----CGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             M+ E             ++++        I ATT    +   +  R  +   L     
Sbjct: 122 VYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPA 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
             + + ++R      +A   +A   +A  ++G+ R A  L  +   ++ 
Sbjct: 181 GHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSA 229


>gi|159029290|emb|CAO90156.1| ftsH3 [Microcystis aeruginosa PCC 7806]
          Length = 625

 Score = 60.9 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 55/260 (21%), Positives = 89/260 (34%), Gaps = 20/260 (7%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAK-------ARAEALDHVLFVGPPGLGKTTLAQVVARE 77
            T ++  G  EA + L   +E  K         A     VL VGPPG GKT LA+ VA E
Sbjct: 166 TTFKDVAGVEEAKTELAEIVEFLKYPQRYIQIGARIPKGVLLVGPPGTGKTLLAKAVAGE 225

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
            GV F S SG         A A  +  L    + +   ++FIDE+  +        +   
Sbjct: 226 AGVAFFSISGSEFVELFVGAGAARVRDLFEQAKKKAPCIIFIDELDAIGKSRANGNFMGG 285

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            D +   +              +   ++AAT R   L   L    RF   + ++  ++  
Sbjct: 286 NDEREQTLNQLLTEMDGFNAGDATVIVLAATNRPETLDPALLRPGRFDRQVLVDRPDLAG 345

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
              I++  A    L    +                  L+      A      T+ +E  +
Sbjct: 346 RLKILEIYAGKVKLGSDADLKQIATRTPGFAGADLANLVNEAALLAARNQRSTVAQEDFN 405

Query: 248 AALLRLAIDKMGFDQLDLRY 267
            A+ R+     G ++     
Sbjct: 406 EAIERVVA---GLEKKSRVL 422


>gi|172060787|ref|YP_001808439.1| DNA polymerase III subunits gamma and tau [Burkholderia ambifaria
           MC40-6]
 gi|171993304|gb|ACB64223.1| DNA polymerase III, subunits gamma and tau [Burkholderia ambifaria
           MC40-6]
          Length = 813

 Score = 60.9 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 85/229 (37%), Gaps = 27/229 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+      GQ      L   ++  +     L H  LF G  G+GKTTL+++ A+ L   
Sbjct: 11  RPKDFASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAMEDFQL 134
              TS P     G   A     E R V +++        +  ++ ++E  +Y  ++    
Sbjct: 66  TGVTSQP----CGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             M+ E             ++++        I ATT    +   +  R  +   L     
Sbjct: 122 VYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPA 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
             + + ++R      ++   +A   +A  ++G+ R A  L  +   ++ 
Sbjct: 181 GHIVSHLERILGEEQISFELQALRLLARAAQGSMRDALSLTDQAIAYSA 229


>gi|121594691|ref|YP_986587.1| DNA polymerase III subunits gamma and tau [Acidovorax sp. JS42]
 gi|120606771|gb|ABM42511.1| DNA polymerase III, subunits gamma and tau [Acidovorax sp. JS42]
          Length = 679

 Score = 60.9 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 51/320 (15%), Positives = 90/320 (28%), Gaps = 75/320 (23%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARE 77
               RP+T  E  GQ      L   +       + L H  LF G  G+GKTT+++++A+ 
Sbjct: 7   ARKYRPKTFSEMVGQEHVVQALSNALT-----QQRLHHAYLFTGTRGVGKTTVSRILAKS 61

Query: 78  LGVN-----------------------------FRSTSGPVIAKAGDLAALLTNL----- 103
           L                                +            ++  LL        
Sbjct: 62  LNCQGPDGQGGITATPCGVCPACTDIDSGRFPDYTELDAASNRGVDEVQGLLEQAVYKPV 121

Query: 104 -EDRDVLFIDEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAAT 160
                V  IDE+H L+      +   +E+    L  ++      +     LSR       
Sbjct: 122 QGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNLR 181

Query: 161 TRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPR 220
                                    E +   + R      +    +A   +A  +RG+ R
Sbjct: 182 PMA---------------------PETVLEHLTRVLAAENVPAEPQALRLLARAARGSMR 220

Query: 221 IAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV 280
            A  L     D A    +  +        L  +    +       R +  +A+  G   V
Sbjct: 221 DALSL----TDQAIAFGSGQLQEAAVRQMLGSVDRSHVF------RLIDALAQGDGRTVV 270

Query: 281 G-IETISAGLSEPRDAIEDL 299
              +T+          +ED+
Sbjct: 271 ETADTLRINGLSAASTLEDM 290


>gi|148706232|gb|EDL38179.1| protease, serine, 15, isoform CRA_a [Mus musculus]
          Length = 515

 Score = 60.9 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 61/326 (18%), Positives = 120/326 (36%), Gaps = 65/326 (19%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI  ++ R      +L F GPPG+GKT++A+ +AR LG  +   S
Sbjct: 44  EDHYGMEDVKKRVLEFIAVSQLRGSTQGKILCFHGPPGVGKTSIARSIARALGREYFRFS 103

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ ++    +        
Sbjct: 104 VGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLVLIDEVDKIGRGYQGDPSSALL 163

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD  +        V ++LS+   I     +  +  PL+DR  + I ++ 
Sbjct: 164 ELLDPEQNANFLDHYL-------DVPVDLSKVLFICTANVIDTIPEPLRDRMEM-INVSG 215

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  ++   I +R   L   A T     E   +       A  L   ++ +   +  + + 
Sbjct: 216 YVAQEKLAIAERY--LVPQARTLCGLDESKAQLS-----AAVLTLLIKQYCRESGVRNL- 267

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           ++  +  L + A   +  +   ++      ++F G PV               +E + E 
Sbjct: 268 QKQVEKVLRKAAYKIVSGEAQTVQVTPENLQDFVGKPVF-------------TVERMYE- 313

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLG 328
                     TP G ++M +AW  +G
Sbjct: 314 ---------VTPPG-VVMGLAWTAMG 329


>gi|116327328|ref|YP_797048.1| ATP-dependent Zn protease [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116120072|gb|ABJ78115.1| ATP-dependent Zn protease [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
          Length = 652

 Score = 60.9 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 60/249 (24%), Positives = 95/249 (38%), Gaps = 23/249 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAK-------ARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T E+  G  EA   L   IE  K         A     VL VGPPG GKT LA+ VA E 
Sbjct: 178 TFEDVAGCEEAKEELVEIIEFLKDPKKFHAIGARIPTGVLLVGPPGTGKTLLARAVAGEA 237

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG       V   A  +  L    +     ++FIDEI  +  +    L    +
Sbjct: 238 GVPFFSISGSDFVEMFVGVGASRVRDLFDQGKKNSPCIIFIDEIDAVGRLRGAGLGGGHD 297

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  M+ E       +       ++AAT R  +L   L    RF   + ++  +I+
Sbjct: 298 EREQTLNQMLVEMDGFEKNEG----VIVMAATNRADVLDPALLRPGRFDRQVMVDLPDIK 353

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++  ++   +                T      L+      A   + K +T+E  
Sbjct: 354 GREEILKVHSRKVPMTSDISLHSIARGTPGFTGADLANLINEGALLAARKNKKRVTQEEL 413

Query: 247 DAALLRLAI 255
           + A  ++ +
Sbjct: 414 EEARDKVMM 422


>gi|305431808|ref|ZP_07400975.1| DNA polymerase III, gamma/tau subunit DnaX [Campylobacter coli
           JV20]
 gi|304444892|gb|EFM37538.1| DNA polymerase III, gamma/tau subunit DnaX [Campylobacter coli
           JV20]
          Length = 518

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 51/235 (21%), Positives = 89/235 (37%), Gaps = 27/235 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     RP+T +E  GQ    ++LK  +         L H  LF G  G GKT+ A++ +
Sbjct: 4   ALAIKYRPKTFDELIGQKTVSTSLKYAL-----NHNRLAHAYLFSGLRGSGKTSSARIFS 58

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHR-----LSIIVEEILY-P 127
           R L  +    +GP     G     L  LE +  D++ +D         +  ++E+  Y P
Sbjct: 59  RALVCD----NGPSDTPCGTCKQCLAALEGKHIDIIEMDAASNRGLEDIQALIEQTKYTP 114

Query: 128 AMEDFQLDLMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +M  F++ ++               ++++   S    I ATT    L   +  R      
Sbjct: 115 SMARFKIFIIDEVHMLTPQAANALLKTLEEPPSYVKFILATTDPLKLPATVLSRTQHFRF 174

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
               + E L   ++       +   +EA   +A    G+ R    LL +   F +
Sbjct: 175 KQIPQNEIL-NHLKEILNKENVKFEEEALKFVARSGNGSLRDTLTLLDQAIIFCQ 228


>gi|254166928|ref|ZP_04873782.1| AAA family ATPase, CDC48 subfamily [Aciduliprofundum boonei T469]
 gi|289596082|ref|YP_003482778.1| AAA family ATPase, CDC48 subfamily [Aciduliprofundum boonei T469]
 gi|197624538|gb|EDY37099.1| AAA family ATPase, CDC48 subfamily [Aciduliprofundum boonei T469]
 gi|289533869|gb|ADD08216.1| AAA family ATPase, CDC48 subfamily [Aciduliprofundum boonei T469]
          Length = 727

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 51/276 (18%), Positives = 88/276 (31%), Gaps = 29/276 (10%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHV--------LFVGPPGLGKTTLAQVVARELG 79
           ++  G  +    L+  +E      +   H+        L  GPPG GKT LA+ VA E  
Sbjct: 455 DDIGGLEQVKQELREVVEWPMKYRKLFAHMKVKIPKGILLYGPPGTGKTLLAKAVATESE 514

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAMED 131
            NF S  GP             +  +          V+FIDEI  ++ +    +   + +
Sbjct: 515 ANFISVKGPEFLSKWVGESEKAVREVFRKARQAAPAVIFIDEIDAIAPMRGRDIGSHVTE 574

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
             +  ++ E          L   T+IAAT R  +L   L    RF   + +   + +  K
Sbjct: 575 RVVSQILTE----MDGLEELHNVTVIAATNRPDILDPALLRPGRFDRIVYVPIPDKDARK 630

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA--EVAHAKTITREIAD 247
            I +   +   LA   +           T      +       A  E   +     E  D
Sbjct: 631 EIFKIHLRGRPLAEDVDIDKLAEKTEGYTGADIEAVCNEATILALREFIQSGKNPDEPKD 690

Query: 248 AALLRLAIDK-----MGFDQLDLRYLTMIARNFGGG 278
           A +     ++         + +      +   F   
Sbjct: 691 AKIEMKHFEEALKKVKPLSKEEREMYERMVDRFRKR 726



 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 57/248 (22%), Positives = 89/248 (35%), Gaps = 34/248 (13%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLF 59
           +S   ++E   IS++   T E+  G  E    ++  +E      E            VL 
Sbjct: 165 ISEKPAKESQGISMV---TYEDIGGLKEEIKKIREMVELPLRHPELFERLGIEPPKGVLL 221

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLEDR--DVLFI 111
            GPPG GKT LA+ VA E   +F   SGP I          +L  +    +D    ++FI
Sbjct: 222 YGPPGTGKTLLAKAVANEANAHFIYLSGPEIMSKFYGQSEENLREIFKEAQDNAPSIIFI 281

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DEI  ++   +E+            +V +  +      +  +  +I AT R   L   L+
Sbjct: 282 DEIDSIAPKRDEVSGEVERR-----VVAQLLALMDGLESRGKVVVIGATNRPNALDPALR 336

Query: 172 -----DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTP-----RI 221
                DR            +++  I  RG  L      ++ A                  
Sbjct: 337 RPGRFDREIEIGIPGKNARKEILEIHTRGVPLAENVDLEKLADMTHGYVGADLAALVKEA 396

Query: 222 AGRLLRRV 229
           A R LRRV
Sbjct: 397 AMRALRRV 404


>gi|330907719|ref|XP_003295912.1| hypothetical protein PTT_03710 [Pyrenophora teres f. teres 0-1]
 gi|311332373|gb|EFQ95995.1| hypothetical protein PTT_03710 [Pyrenophora teres f. teres 0-1]
          Length = 743

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 59/275 (21%), Positives = 94/275 (34%), Gaps = 43/275 (15%)

Query: 16  DADISLLRPRTLEE------------FTGQVEACSNL-----KVF----IEAAKARAEAL 54
           DA +  +RP  L++              G     + L     + F    ++      ++ 
Sbjct: 451 DAVMERVRPTVLKDSILEVPKVRWTDIAGLDHVRAVLEAITIRPFKYPDLDVKFGGPQSR 510

Query: 55  DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD----- 107
             VL  GPPG  KT +AQ VA E   NF +  G  + K   G+    + ++  R      
Sbjct: 511 KGVLLYGPPGCAKTLIAQAVATESKQNFLAVKGSELIKMYVGESERAIRDVFRRARAAKP 570

Query: 108 -VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
            ++F DEI  +    E+     +      L   +G  A      L    +I AT R  +L
Sbjct: 571 CIIFFDEIDSIGKSREKTQDSGLNVVATLLNEMDGIEA------LKDVFIIGATNRPDIL 624

Query: 167 TNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGL-AVTDEAACEIAMRSRGTPRIAG 223
            + L    RF   I +     E  K I+Q   +   L    D  A            I+G
Sbjct: 625 DSALIRTGRFDAHIHIGLPTEEARKQILQIHTRKRPLAPDVDLDAVAKKTEGSSGADISG 684

Query: 224 RLLRRVRDF-----AEVAHAKTITREIADAALLRL 253
                V        AE  +   +  +  + AL + 
Sbjct: 685 LCAVAVELAITDYTAEPNNEPQVHMQHFEQALQQH 719


>gi|218283047|ref|ZP_03489149.1| hypothetical protein EUBIFOR_01735 [Eubacterium biforme DSM 3989]
 gi|218216241|gb|EEC89779.1| hypothetical protein EUBIFOR_01735 [Eubacterium biforme DSM 3989]
          Length = 604

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 58/246 (23%), Positives = 95/246 (38%), Gaps = 23/246 (9%)

Query: 25  RTLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +T  +  GQ EA  NL+  +       +  +  A+     L VGPPG GKT LA+ VA E
Sbjct: 151 KTFNDVAGQEEAKENLQEIVDFLNNPAKYKEIGAKMPKGALLVGPPGTGKTLLAKAVAGE 210

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
            GV F S SG           A  +  L     ++   ++FIDEI  +    +       
Sbjct: 211 AGVPFFSISGSEFVEMFVGRGAAKVRDLFKQAREKAPCIVFIDEIDTIGKKRDGAGMNGN 270

Query: 130 EDFQLDLMVGEGPSARSVKINLSR-FTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           ++ +  L       A     + S+   L+AAT R   L   L    RF   I +   ++ 
Sbjct: 271 DEREQTL---NQLLAEMDGFDGSKGVVLLAATNRPDSLDPALTRPGRFDRRIPVELPDLA 327

Query: 187 DLKTIVQRGAK-LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
             + I++  AK +      D      A        +A  ++      A   H K++ ++ 
Sbjct: 328 GREAILKLHAKDIKCSNNIDFNVIARASAGASGAELAN-IINEGALLAVRDHRKSVVQKD 386

Query: 246 ADAALL 251
            + A+ 
Sbjct: 387 LEEAIE 392


>gi|88801469|ref|ZP_01116997.1| AAA ATPase, CDC48 [Polaribacter irgensii 23-P]
 gi|88782127|gb|EAR13304.1| AAA ATPase, CDC48 [Polaribacter irgensii 23-P]
          Length = 717

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 53/216 (24%), Positives = 76/216 (35%), Gaps = 26/216 (12%)

Query: 28  EEFTGQVEACSNLKVFIE--------AAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           ++  G  E    LK  IE          KA       ++  GPPG GKT LA+ VA E G
Sbjct: 457 DDVGGLNEIKEALKEAIEWPLKYAELFRKADTNPPKGIILYGPPGTGKTYLAKAVASESG 516

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLED--RDVLFIDEIHRLSIIVE-EILYPAME 130
           VNF S  GP I           +  L    +     +LF+DEI  L      E     + 
Sbjct: 517 VNFISVKGPQIMSKYIGESEKGVRELFKKAKQAAPTILFLDEIDSLVPRRNSESSGANVT 576

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIR---LNFYEI 185
           D  +   + E         +L    ++AAT R+ L+   L    RF +       +    
Sbjct: 577 DRVISQFLTE----MDGIEDLKGVVVLAATNRIDLIDPALLRSGRFDLLFEVPAPDEKTR 632

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRI 221
           E++  I  R  +L       + A E           
Sbjct: 633 ENIFKIHTRNKQLQKNINLKKLAKETEGMVGADIEF 668



 Score = 50.1 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 63/163 (38%), Gaps = 13/163 (7%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLED 105
           +    V   GPPG GKT + + VA E    F   SGP I           L  +  + + 
Sbjct: 214 DPPKGVFLYGPPGTGKTLIVRAVASETDAYFLHISGPEIMGKFYGESEERLRKVFADAQA 273

Query: 106 R--DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
               ++FIDEI  ++   E++     E      +V +  S      +  +  +I AT   
Sbjct: 274 HAPAIIFIDEIDAIAPKREDL---GGEKQVEKRVVAQLLSLMDGLESRGKVIVIGATNIP 330

Query: 164 GLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVT 204
             +   L+   RF   + ++  + +    I++   +   LA+ 
Sbjct: 331 NTIDPALRRPGRFDRELSVSIPDKKGRLEILEIHTRGMPLAID 373


>gi|93006233|ref|YP_580670.1| DNA polymerase III, subunits gamma and tau [Psychrobacter
           cryohalolentis K5]
 gi|92393911|gb|ABE75186.1| DNA polymerase III, gamma subunit / DNA polymerase III, tau subunit
           [Psychrobacter cryohalolentis K5]
          Length = 685

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 47/245 (19%), Positives = 82/245 (33%), Gaps = 23/245 (9%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLA 71
            Q        RP+   E  GQ      L   I+        L H  LF G  G+GKTT+A
Sbjct: 3   QQYQVLARKYRPKNFHELIGQTHVSQALINAID-----YNRLHHAYLFTGTRGVGKTTIA 57

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY----- 126
           +++++ L  +   TS P      D    +      D++ ID   R  +     L      
Sbjct: 58  RILSKCLNCDTGITSTP--CGVCDNCVAIDQGRFIDLIEIDAASRTKVEDTRELLDNVPY 115

Query: 127 -PAMEDFQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
            P+   +++ L+               ++++        + ATT    L   +  R  + 
Sbjct: 116 APSQGRYKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLLATTDPQKLPITIISRC-LQ 174

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
             L       L   +        +  T  A  ++A  ++G+ R A  L  +   F + A 
Sbjct: 175 FVLRPLSQSLLSEHLANVLTQEQVGYTQPALWQLASAAKGSVRDALSLTDQAIAFGQGAL 234

Query: 238 AKTIT 242
                
Sbjct: 235 DDVTV 239


>gi|327438120|dbj|BAK14485.1| DNA polymerase III, gamma/tau subunits [Solibacillus silvestris
           StLB046]
          Length = 583

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 80/244 (32%), Gaps = 59/244 (24%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP++  E +GQ      L+  + A+K         LF GP G GKT+ A++ A+ L    
Sbjct: 11  RPQSFREMSGQTHVKRTLQNALLASKTTHAY----LFSGPRGTGKTSTAKIFAKALNCEN 66

Query: 83  RSTS------------------------GPVIAKAGDLAALLTNLE------DRDVLFID 112
              S                            ++  ++  ++  +          V  ID
Sbjct: 67  APASEPCNECPTCLSITEGSHTDVIEFDAASNSRVEEMRDIIEKVRFAPANARFKVYIID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS      L   +E+                         I ATT    L   +  
Sbjct: 127 EVHMLSTSAFNALLKTLEE------------------PPEHAVFILATTEPHKLPATIIS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQR---GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           R           I+    IV+R     +  G+   ++A   IA  + G  R A  LL +V
Sbjct: 169 RCQRFDFKRLSSID----IVERMKVVLEDIGMGYDEQALKAIAQAAAGGMRDALSLLDQV 224

Query: 230 RDFA 233
             F+
Sbjct: 225 VSFS 228


>gi|168335352|ref|ZP_02693447.1| Endopeptidase La [Epulopiscium sp. 'N.t. morphotype B']
          Length = 548

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 53/295 (17%), Positives = 96/295 (32%), Gaps = 56/295 (18%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
           R +S  +     +RPR+ E+  GQ +A          A   ++   H++  G PG+GKT 
Sbjct: 49  RKISLREPLTEKMRPRSEEDIVGQDDALLA-----LKAALCSKNPQHIIIYGSPGVGKTA 103

Query: 70  LAQV---VARELGVNFRSTSG-------------------PVIAKAGD------------ 95
            +++   +A+    +  +                      P+I    D            
Sbjct: 104 ASRIALDIAKAQPNSPFTRDAKFVEIDATTLRFDEKSVADPLIGSVHDPIYQGAGNYGSA 163

Query: 96  -----LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL---DLMVGEGPSARSV 147
                    +T      VLFIDEI  L  I    L   +ED ++    +   E       
Sbjct: 164 GIPNPKEGAVTKAHGG-VLFIDEIGELHSIQMNKLLKVLEDRKVNFDSIYYNEKDKNIPR 222

Query: 148 KI-------NLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
            I         + F LI ATTR      P      I I     +   +  I++R      
Sbjct: 223 HIHDIFQNGLPADFRLIGATTRDKSEIPPALRSRCIEISFQDLKYAHIVEIIRRIIA-RE 281

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255
               +    E         R A  +L+   +   +++ +++T++  +  +     
Sbjct: 282 YIRVENGVAETIAEHVNNGRDAISILQMAMNKVALSNQESVTKKDVEWVIKSGGY 336


>gi|121607506|ref|YP_995313.1| DNA polymerase III subunits gamma and tau [Verminephrobacter
           eiseniae EF01-2]
 gi|121552146|gb|ABM56295.1| DNA polymerase III, subunits gamma and tau [Verminephrobacter
           eiseniae EF01-2]
          Length = 614

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 58/216 (26%), Gaps = 43/216 (19%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RPR   E  GQ      L      A  R       LF G  G+GKTT+A+++A+ L
Sbjct: 7   ARKYRPRNFAEMVGQEHVVQALS----NALTRQRLHHAYLFTGTRGVGKTTVARILAKSL 62

Query: 79  GVN-----------------------------FRSTSGPVIAKAGDLAALLTNL------ 103
                                           +            ++ +LL         
Sbjct: 63  NCQGPDGQGGITATPCGICPACSDIDSGRFVDYTELDAASNRGVDEVQSLLEQAVYKPVQ 122

Query: 104 EDRDVLFIDEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATT 161
               V  IDE+H L+      +   +E+    L  ++      +     LSR        
Sbjct: 123 GRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNLRP 182

Query: 162 RVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
                 +       +              ++ R A+
Sbjct: 183 MAPQTVHAHL--VQVLAAEQVAAEPQALQLLARAAR 216


>gi|24216518|ref|NP_713999.1| ATP-dependent Zn protease [Leptospira interrogans serovar Lai str.
           56601]
 gi|45656331|ref|YP_000417.1| cell division protein [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
 gi|24197827|gb|AAN51017.1| ATP-dependent Zn protease [Leptospira interrogans serovar Lai str.
           56601]
 gi|45599565|gb|AAS69054.1| cell division protein [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
          Length = 655

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 60/249 (24%), Positives = 95/249 (38%), Gaps = 23/249 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAK-------ARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T E+  G  EA   L   IE  K         A     VL VGPPG GKT LA+ VA E 
Sbjct: 178 TFEDVAGCEEAKEELVEIIEFLKDPKKFHAIGARIPTGVLLVGPPGTGKTLLARAVAGEA 237

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG       V   A  +  L    +     ++FIDEI  +  +    L    +
Sbjct: 238 GVPFFSISGSDFVEMFVGVGASRVRDLFDQGKKNSPCIIFIDEIDAVGRLRGAGLGGGHD 297

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  M+ E       +       ++AAT R  +L   L    RF   + ++  +I+
Sbjct: 298 EREQTLNQMLVEMDGFEKNEG----VIVMAATNRADVLDPALLRPGRFDRQVMVDLPDIK 353

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++  ++   +                T      L+      A   + K +T+E  
Sbjct: 354 GREEILKVHSRKVPMTSDISLHSIARGTPGFTGADLANLINEGALLAARKNKKRVTQEEL 413

Query: 247 DAALLRLAI 255
           + A  ++ +
Sbjct: 414 EEARDKVMM 422


>gi|23016072|ref|ZP_00055832.1| COG2812: DNA polymerase III, gamma/tau subunits [Magnetospirillum
           magnetotacticum MS-1]
          Length = 597

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 66/348 (18%), Positives = 111/348 (31%), Gaps = 49/348 (14%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           +   +         RP       GQ      L   I+  +         +  G  G+GKT
Sbjct: 4   TPAPTPYRVLARKYRPTDFAGLIGQEAMVRTLSNAIKTGRLAHA----FVLTGVRGVGKT 59

Query: 69  TLAQVVARELGV-NFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIV---- 121
           T A+++AR L         GP I   G         EDR  D+L +D   R  +      
Sbjct: 60  TTARIIARALNCVGTDGKGGPTIDPCGVCEHCRAIAEDRHVDILEMDAASRTGVNDIREI 119

Query: 122 -EEILYPAMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
            E + Y          ++ E             ++++        I ATT +  +   + 
Sbjct: 120 IEGVRYRPTSARFKVYIIDEVHMLSTAAFNALLKTLEEPPEHVKFIFATTEIRKIPVTVL 179

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R      L   E+E L    +  A   G  +   A   IA  + G+ R    LL +   
Sbjct: 180 SRCQ-RFDLRRVEMEVLSRHFEAIAAKEGAEIEPAALKLIARAADGSVRDGLSLLDQAIS 238

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETI---SAG 288
               A  +T  R++   A      D           L  + +  G  P  ++ I    A 
Sbjct: 239 HGAGAVTETQVRDMLGLADRARVFD----------LLDAVMK--GDVPTALDQITDQYAA 286

Query: 289 LSEPRDAIEDLIE--PYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPHR 334
            ++P   ++D++E   ++ +            + P A   LG     R
Sbjct: 287 GADPAVVLQDMLELVHWLTRL----------KVTPDAADQLGAPETER 324


>gi|330833828|ref|XP_003291980.1| hypothetical protein DICPUDRAFT_39856 [Dictyostelium purpureum]
 gi|325077816|gb|EGC31505.1| hypothetical protein DICPUDRAFT_39856 [Dictyostelium purpureum]
          Length = 264

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 52/234 (22%), Positives = 91/234 (38%), Gaps = 38/234 (16%)

Query: 26  TLEEFTGQVEACSNLK--VFI----------EAAKARAEALDHV----LFVGPPGLGKTT 69
           T E+  G  E  ++LK  +F+          E +K+  E L +V    LF GPPG GKT 
Sbjct: 30  TFEDIGGLQEIINDLKDSIFLPLEAAKHFKREPSKSNNEDLFNVPKGILFHGPPGTGKTM 89

Query: 70  LAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLE--DRDVLFIDEIHRL--SI 119
           +A+ +A   G +F +    ++          ++AA+ +  +     ++FIDE+  +  + 
Sbjct: 90  MAKAIANYAGYSFLAIDHSILDHKWYGETEKNVAAIFSVAKKLQPTIIFIDEVDSMTGNR 149

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
             E  +  + +   L L  G             +  +I AT R+  +      RF     
Sbjct: 150 DSEHEVTTSKKSMLLSLWDGFNSGN-------DKIIIIGATNRIEAIDKAFLRRFERHFL 202

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
           +   + +  K I+Q   K       D         SR T   +G  L+ +   A
Sbjct: 203 IKLPDEKQRKQILQIILKDYVDPDFDYNQL-----SRATNGFSGSDLKSLCKSA 251


>gi|197294456|ref|YP_001798997.1| Putative IMP dehydrogenase/GMP reductase [Candidatus Phytoplasma
           australiense]
 gi|171853783|emb|CAM11716.1| Putative IMP dehydrogenase/GMP reductase [Candidatus Phytoplasma
           australiense]
          Length = 708

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 94/249 (37%), Gaps = 22/249 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDHV--------LFVGPPGLGKTTLAQVVARE 77
           T ++  G       L+  I   K     L +         L  GPPG GKT L + ++ E
Sbjct: 278 TFKDVYGMESEKEELEDLIFYFKESNNNLVNFDKIRPKGYLLYGPPGTGKTFLLKALSNE 337

Query: 78  LGVNF------RSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAM 129
              +F      +     V     +   +    E  D+ ++FIDEI  ++   ++      
Sbjct: 338 CNAHFIEFEPSKLDKTYVGEGVEEWEKIWMEAERHDKTIIFIDEISGMANREDKNSNKTS 397

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
            +   +++       RS K    +  L+ AT  +  +   L+ RF   ++++  + E+++
Sbjct: 398 INIVNNILTKLDGFNRSEK----KIVLMGATNHLDQIDKALRSRFSKEVKIDLIKDEEIE 453

Query: 190 TIVQRGAKLTGLAVTDE-AACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             ++   +   ++        EIA R +G    + R L  + + A     K  T      
Sbjct: 454 GFLKFLIEPYQISYHTYLHLKEIANRCKGK-NYSNRDLTTIINDAYNKTNKFKTLNPNHE 512

Query: 249 ALLRLAIDK 257
            +L   +D+
Sbjct: 513 VMLPSDLDE 521


>gi|170761395|ref|YP_001788658.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169408384|gb|ACA56795.1| ATP-dependent metallopeptidase HflB [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 658

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 65/262 (24%), Positives = 103/262 (39%), Gaps = 33/262 (12%)

Query: 26  TLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T E+  GQ EA  +L   +          +  A+     L VGPPG GKT LA+ VA E 
Sbjct: 163 TFEDVAGQDEAKESLVEIVDFLHKPERYTEIGAKLPKGALLVGPPGTGKTLLAKAVAGEA 222

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  L    +++   ++FIDEI  +    +  +    E
Sbjct: 223 KVPFFSLSGSSFVEMFVGMGAARVRDLFEQAQEKAPCIIFIDEIDAIGKSRDNAMGSNDE 282

Query: 131 -DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ-----DRFGIPIRLNFYE 184
            +  L+ ++ E     S K       ++AAT R  +L   L      DR  I  R +   
Sbjct: 283 REQTLNQLLAEMDGFDSSKG----VVILAATNRPEILDKALLRPGRFDRRVIVDRPDLKG 338

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            ED+  +  +G K++        A       + TP   G  L  + + A +   K   +E
Sbjct: 339 REDILKVHSKGVKISKEVDMSSIA-------KSTPGAVGSDLANIINEAALRAVKNGRQE 391

Query: 245 IADAALLR-LAIDKMGFDQLDL 265
           +    L   + +   G ++ D 
Sbjct: 392 VIQEDLEEAVEVIIAGKEKKDR 413


>gi|119872050|ref|YP_930057.1| AAA family ATPase, CDC48 subfamily protein [Pyrobaculum islandicum
           DSM 4184]
 gi|119673458|gb|ABL87714.1| AAA family ATPase, CDC48 subfamily [Pyrobaculum islandicum DSM
           4184]
          Length = 738

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 61/280 (21%), Positives = 102/280 (36%), Gaps = 31/280 (11%)

Query: 28  EEFTGQVEACSNLKVFIE--------AAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           ++  G       L+  +E          +   E    +L  GPPG+GKT  A+ VA E G
Sbjct: 465 DDIGGYDTIKQELREIVEWPMKYKHYFDELGVEPPKGILLFGPPGVGKTLFAKAVATESG 524

Query: 80  VNFRSTSGPVI--AKAGDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAMED 131
            NF +  GP +     G+    +  +  +       V+F DEI  ++      L      
Sbjct: 525 ANFIAVRGPELLSKWVGESEKAIREIFKKARMAAPCVIFFDEIDSIAPARGSRLGD---S 581

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
              D MV +  +       L    ++AAT R  +L   L    RF   I +   +++   
Sbjct: 582 GVTDRMVNQLLAEMDGIGTLKNVVVMAATNRPDILDPALLRPGRFDRIIYVPPPDLKARI 641

Query: 190 TIVQ---RGAKLTGLAVTDEAACEIAMRSRGT----PRIAGRLLRRVRDFAEVAHAKTIT 242
            I++   R  KL      +E A +    +        R A  L  R     +   AK ++
Sbjct: 642 EILKVHTRKIKLGDDVNLEELAKKTEGYTGADLAALVREAAMLALRETIKEKTPKAKPVS 701

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGI 282
            +  + AL R+          D+R    +A+      VG+
Sbjct: 702 WKHFEEALKRI---PPSLTPEDIRRYEEMAKRIKRAVVGL 738



 Score = 52.0 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/188 (22%), Positives = 70/188 (37%), Gaps = 24/188 (12%)

Query: 24  PR-TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVV 74
           PR T E+     +A   ++  +E      E   H        +L +GPPG GKT LA+ V
Sbjct: 172 PRVTWEDIGDLEDAKQKIRELVELPLRHPELFKHLGIEPPKGILLIGPPGTGKTLLAKAV 231

Query: 75  ARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILY 126
           A E    F + +GP I           L  +    +     ++FIDEI  ++   EE+  
Sbjct: 232 ANEANAYFVAINGPEIMSKYYGESEARLREIFEEAKKNAPAIIFIDEIDAIAPKREEVTG 291

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
              +     L+               +  +I AT R   +   L+   RF   I +   +
Sbjct: 292 EVEKRVVAQLLT-----LMDGLQERGQVIVIGATNRPDAIDPALRRPGRFDREIHIPMPD 346

Query: 185 IEDLKTIV 192
               + I+
Sbjct: 347 KRARREIL 354


>gi|261880081|ref|ZP_06006508.1| ATP-dependent metalloprotease FtsH [Prevotella bergensis DSM 17361]
 gi|270333236|gb|EFA44022.1| ATP-dependent metalloprotease FtsH [Prevotella bergensis DSM 17361]
          Length = 720

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 66/284 (23%), Positives = 110/284 (38%), Gaps = 33/284 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ  A   ++  +E  K          +     L +GPPG GKT LA+ VA E 
Sbjct: 197 TFKDVAGQEGAKQEVQEIVEFLKNPEKYTELGGKIPKGALLIGPPGTGKTLLAKAVAGEA 256

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM- 129
           GV F S SG       V   A  +  +    + +   ++FIDEI  +     +   PAM 
Sbjct: 257 GVPFFSMSGSDFVEMFVGVGASRVRDVFAQAKQKAPCIIFIDEIDAVGRARSKN--PAMG 314

Query: 130 ----EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183
                +  L+ ++ E     +     S   ++AAT RV +L   L    RF   I ++  
Sbjct: 315 GNDERENTLNALLTEMDGFGTN----SGVIVLAATNRVDMLDKALLRAGRFDRQISVDLP 370

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           ++ + K I Q   +          + +I   +R TP  +G  +  V + A +  A+    
Sbjct: 371 DLTERKAIFQVHLRPLKTD----NSLDIDYLARQTPGFSGADIANVCNEAALIAARHDKD 426

Query: 244 EIADAA-LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETIS 286
            ++    L  +     G ++          R+      G  TIS
Sbjct: 427 CVSKQDFLDAVDRIIGGLEKKTKVMTQAEKRSIAIHEAGHATIS 470


>gi|309808245|ref|ZP_07702154.1| putative DNA polymerase III, subunit gamma and tau [Lactobacillus
           iners LactinV 01V1-a]
 gi|308168533|gb|EFO70642.1| putative DNA polymerase III, subunit gamma and tau [Lactobacillus
           iners LactinV 01V1-a]
          Length = 173

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 55/163 (33%), Gaps = 34/163 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV-- 80
           RPRT E   GQ   C  L+     +  R +     LF GP G GKT+ A++ A+ +    
Sbjct: 11  RPRTFEAVVGQSAICDTLR----NSIKRHKISHAFLFSGPRGTGKTSCAKIFAKAINCMD 66

Query: 81  ----------------------NFRSTSGPVIAKAGDLAALLTNLEDRD------VLFID 112
                                 +             ++ A+   ++         V  ID
Sbjct: 67  SKDGEPCNQCSNCLAADKGILNDIIEIDAASNNGVDEIRAIRDKVKYAPTQGYYKVYIID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFT 155
           E+H LSI     L   +E+    ++     +      + + FT
Sbjct: 127 EVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKSSSNNNFT 169


>gi|85057694|ref|YP_456610.1| ATP-dependent Zn protease [Aster yellows witches'-broom phytoplasma
           AYWB]
 gi|84789799|gb|ABC65531.1| ATP-dependent Zn protease [Aster yellows witches'-broom phytoplasma
           AYWB]
          Length = 417

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 49/206 (23%), Positives = 83/206 (40%), Gaps = 12/206 (5%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--V 108
           VL  GPPG GKT LA+ +A E  V F + SG           A  +  L    +     +
Sbjct: 211 VLLEGPPGTGKTLLAKALANEAKVPFYAVSGSEFVEIYVGVGASRIRDLFQKAKTTTPCI 270

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +FIDEI  L    +    P +E  + D  + +          LS+  +IAAT R+ +L  
Sbjct: 271 IFIDEIDTLGAKRKNN--PIIESREHDQSLNQLLLEMDGFFKLSQIIIIAATNRIDMLDP 328

Query: 169 PLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
            L    RF   I++N   ++  + I++  AK   +++  +      +    +      +L
Sbjct: 329 ALIRPGRFDRKIKINLPNLKAREAILKVHAKNKNISLDVDFYKLALITEGASGAQLAAIL 388

Query: 227 RRVRDFAEVAHAKTITREIADAALLR 252
                 A   +   I +   + A+ R
Sbjct: 389 NEALILAIRNNKDQINKLFLEQAIKR 414


>gi|220907438|ref|YP_002482749.1| ATPase AAA [Cyanothece sp. PCC 7425]
 gi|219864049|gb|ACL44388.1| Vesicle-fusing ATPase [Cyanothece sp. PCC 7425]
          Length = 601

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 64/308 (20%), Positives = 106/308 (34%), Gaps = 32/308 (10%)

Query: 32  GQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARELGVNFR 83
           G  E    L+  IE      E L          VL VGPPG GKT  A+ +A+ELGVN  
Sbjct: 81  GLSEVVRELRELIELPLKHPELLTMLGLEPTKGVLLVGPPGTGKTLTARALAKELGVNSI 140

Query: 84  STSGPVIAKA--GDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           +  GP I     G+  A L  +  +       ++FIDEI  L+    E     +E     
Sbjct: 141 AIVGPEIMGKYYGEAEARLRGIFQKAARSAPCIVFIDEIDSLAPNRAE-----VEGEVEK 195

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQ 193
            +V +               ++AAT R   L   L+   RF   ++    +      I+ 
Sbjct: 196 RVVAQLLGLMDGFAQTKGVIVLAATNRSDHLDPALRRPGRFDREVQFRVPDRAGRLDILA 255

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
             ++   L    +      +           L ++    A      ++   ++    +  
Sbjct: 256 ILSRNLPLDTGVDLKVIADLSVGMVGADLKALCQKAAYIALRRQLPSLEVPVSQPITVIQ 315

Query: 254 AIDKMGFDQLDLRYLTMI-ARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQR 312
           +       Q+    L  +           I     GL E +  +++ +E  ++     QR
Sbjct: 316 SDFLQALKQVKPAVLRSVEIETPTTSWNEI----GGLEEVKQTLQETVEGALLYPELYQR 371

Query: 313 T----PRG 316
           T    PRG
Sbjct: 372 TKAKAPRG 379



 Score = 44.3 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 76/187 (40%), Gaps = 21/187 (11%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAA--------KARAEALDHVLFVGPPGLGKTTLAQVVAR 76
            +  E  G  E    L+  +E A        + +A+A   +L  GPPG GKT LA+ VA 
Sbjct: 340 TSWNEIGGLEEVKQTLQETVEGALLYPELYQRTKAKAPRGILLWGPPGTGKTLLAKAVAA 399

Query: 77  ELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPA 128
           +   NF + +GP +      A    +  L T        V+F+DEI  L+          
Sbjct: 400 QASANFIAINGPELLSKWVGASEQAVRELFTKARQAAPCVVFMDEIDSLAPARGNF---Q 456

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
            +    D +VG+  +        S   LI AT R  +L   L    R  + I+++  +  
Sbjct: 457 GDSGVSDRVVGQLLTELDGLQECSNVLLIGATNRPEVLDPALLRSGRLDLQIKVDLPDQS 516

Query: 187 DLKTIVQ 193
              +I+Q
Sbjct: 517 SRLSILQ 523


>gi|152964436|ref|YP_001360220.1| DNA polymerase III, subunits gamma and tau [Kineococcus
           radiotolerans SRS30216]
 gi|151358953|gb|ABS01956.1| DNA polymerase III, subunits gamma and tau [Kineococcus
           radiotolerans SRS30216]
          Length = 712

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/175 (22%), Positives = 63/175 (36%), Gaps = 26/175 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T E+  GQ    + L      A ++       LF GP G GKTT A+++AR
Sbjct: 4   ALYRRYRPETFEQVIGQEHVTAPL----MQALSKGRVTHAYLFSGPRGCGKTTSARILAR 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR----DVLFIDEIHRLSIIVEEILY------ 126
            L        GP     G+  + +          DV+ ID      +     L       
Sbjct: 60  CLNC----AQGPTPTPCGECDSCVDLANGGPGSIDVVEIDAASHNGVDDARDLRERVSFA 115

Query: 127 PAMEDFQLDLMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           PA + F++ ++         G     ++V+        + ATT    +   ++ R
Sbjct: 116 PARDRFKVYILDEAHMVSPQGFNALLKTVEEPPPHVKFVFATTEPDKVLTTIRSR 170


>gi|62733734|gb|AAX95843.1| hypothetical protein LOC_Os11g13990 [Oryza sativa Japonica Group]
 gi|77549593|gb|ABA92390.1| ATPase, AAA family protein [Oryza sativa Japonica Group]
          Length = 1121

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 50/232 (21%), Positives = 79/232 (34%), Gaps = 21/232 (9%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           VS + +     RPR+  E  GQ     +L   I     R       LF GP G GKT+ A
Sbjct: 331 VSDQRSLSQKYRPRSFNELVGQSFVVQSLNNAI----IRERIAPAYLFHGPRGTGKTSAA 386

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY----- 126
           ++ +  L       + P      +     T      ++ +D  +R SI     L      
Sbjct: 387 RIFSAALSCVAIGENKP-CGACMECTDFFTGNGIN-LIEVDASNRKSINRIRHLIENIPA 444

Query: 127 PAMEDFQLDLMVGEGPSARS---------VKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
            A        +V E     S         +   L R   I  T     L   +  R    
Sbjct: 445 SATSSRYKVFVVDECHMVSSKVWSAFMKFLDEPLPRVVFIFITIDPENLPRAVISRCQKY 504

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           +     +I+ +   +++ A    L V   A   IA+ S G+ R A  +L ++
Sbjct: 505 MFSKIKDIDIVCR-LRKIAVKENLDVELAALDLIALNSDGSLRDAETMLDQL 555


>gi|29840095|ref|NP_829201.1| DNA polymerase III subunits gamma and tau [Chlamydophila caviae
           GPIC]
 gi|29834443|gb|AAP05079.1| DNA polymerase III, gamma subunit [Chlamydophila caviae GPIC]
          Length = 446

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 52/270 (19%), Positives = 87/270 (32%), Gaps = 58/270 (21%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
              RP+T  E  GQ    + LK  ++  +         LF G  G GKTTLA++ A+ L 
Sbjct: 11  RKYRPQTFSEILGQDAVVTVLKNALQFQRVAHAY----LFSGIRGTGKTTLARIFAKALN 66

Query: 80  VNFRST-------------------------SGPVIAKAGDLAALLTNL------EDRDV 108
              R++                          G       D+  +   +          +
Sbjct: 67  CPERTSDHEPCNHCCICKEISSGTSLDVIEIDGASHRGIEDIRQINETVLFTPAKSQYKI 126

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
             IDE+H L+      L   +E+                    S      ATT    +  
Sbjct: 127 YIIDEVHMLTKEAFNSLLKTLEE------------------PPSHVKFFLATTENYKIPG 168

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            +  R          E   ++ +    +K   +  + EA   IA  ++G+ R A  L   
Sbjct: 169 TILSRCQKMYLKRIPETMIVEKLAS-ISKENSIETSSEALLPIARAAQGSLRDAESLY-- 225

Query: 229 VRDFAEVAHAKTITREIADAALLRLAIDKM 258
             D+      K+++ E    AL  L+ D +
Sbjct: 226 --DYVTGLFPKSLSPESVADALGLLSQDTL 253


>gi|313237893|emb|CBY13021.1| unnamed protein product [Oikopleura dioica]
          Length = 690

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 72/187 (38%), Gaps = 32/187 (17%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI  ++ R      +L F GPPG GKT++A+ +AR LG  +   S
Sbjct: 238 EDHYGMNDVKDRILEFICTSQLRGSVQGKILCFHGPPGTGKTSIAKSIARSLGRKYYRFS 297

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              ++   ++                        +  ++ IDEI +L    +        
Sbjct: 298 VGGMSDVAEIKGHRRTYVGAMPGKLVQCLKKTESENPLILIDEIDKLGRGYQGDPSSALL 357

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD  +        V I+LS+   I     +  ++ PL+DR  +     +
Sbjct: 358 ELLDPEQNVGFLDHYL-------DVPIDLSKALFICTANDLSTISGPLRDRMEMIEVAGY 410

Query: 183 YEIEDLK 189
              E ++
Sbjct: 411 ITDEKVE 417


>gi|189184647|ref|YP_001938432.1| DNA polymerase III subunits gamma and tau [Orientia tsutsugamushi
           str. Ikeda]
 gi|189181418|dbj|BAG41198.1| DNA polymerase III gamma and tau chains [Orientia tsutsugamushi
           str. Ikeda]
          Length = 559

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 55/277 (19%), Positives = 97/277 (35%), Gaps = 27/277 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLK-VFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
                 RP+T+ E  GQ      L    I    ++A      L  G  G+GKTT A+++A
Sbjct: 10  VWARKYRPKTMCELIGQEVLTKVLTYSMITGCLSQA-----YLLSGIRGVGKTTAARIIA 64

Query: 76  RELGVNFRSTSGPVI---AKAGDLAALLTNLEDRDVLFIDEIHRL-----SIIVEEILYP 127
             +       +   I    K     A+  N    D+  ID   R        I+++  Y 
Sbjct: 65  TTINCLQPLVTSKTIFACTKCNSCIAIENNSHP-DINEIDAASRTGVDDVRTIIDDSEYK 123

Query: 128 AMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
            +       ++ E             + ++   S    I ATT +  +   +  R     
Sbjct: 124 PLISKYKIFIIDEVHMLSKNAFNALLKLLEEPPSHTIFIFATTEINKIPLTVISRCQ-KF 182

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
            L   ++ ++  I+        ++ T E    IA+++ G+ R A  LL + +  A+   A
Sbjct: 183 DLRRLDVNNIVQILSNIIAKENVSATKEILEFIAVKADGSARDAISLLEQAKALAQ-NIA 241

Query: 239 KTITREIADAALLRLAIDKMGFD-QLDLRYLTMIARN 274
            T + E    +L  +       D       L+ IA  
Sbjct: 242 DTASSEAVVISLNTVEQMCGVLDLGKSTDLLSAIAEK 278


>gi|163842075|ref|YP_001626480.1| DNA polymerase III subunits gamma and tau [Renibacterium
           salmoninarum ATCC 33209]
 gi|162955551|gb|ABY25066.1| DNA polymerase III subunit gamma/tau [Renibacterium salmoninarum
           ATCC 33209]
          Length = 812

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 45/237 (18%), Positives = 73/237 (30%), Gaps = 23/237 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T  +  GQ      L   +   +         LF GP G GKTT A+++AR
Sbjct: 4   ALYRRYRPDTFADVIGQEHVTEPLMTALRKNRVNHAY----LFSGPRGCGKTTSARILAR 59

Query: 77  ELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PA 128
            L      T  P        +LA         DV+ ID      +     L       P 
Sbjct: 60  CLNCAQSPTDTPCGSCDSCVELA--TGGPGSLDVIEIDAASHGGVDDARDLRERATFAPV 117

Query: 129 MEDFQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            + +++ ++         G     + V+        I ATT    +   ++ R       
Sbjct: 118 RDRYKIFIIDEAHMVTSAGFNALLKIVEEPPEHIKFIFATTEPEKVIGTIRSR-THHYPF 176

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                E L   +Q       + V       +     G+ R +  +L ++   A    
Sbjct: 177 RLVPPEPLMAYLQLLCDQEKVPVAPGVLSLVVRAGGGSVRDSLSVLDQLMAGAGAQG 233


>gi|326772637|ref|ZP_08231921.1| DNA polymerase III, subunit gamma and tau [Actinomyces viscosus
           C505]
 gi|326637269|gb|EGE38171.1| DNA polymerase III, subunit gamma and tau [Actinomyces viscosus
           C505]
          Length = 365

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 41/173 (23%), Positives = 62/173 (35%), Gaps = 22/173 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T +E  GQ    + L   + A +         LF GP G GKTT A+++AR
Sbjct: 4   ALYRRYRPDTFQEVIGQDHVTAPLMAALRADRVTHAY----LFSGPRGCGKTTSARILAR 59

Query: 77  ELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PA 128
            L      T  P        DLA         DV+ ID      +     L       PA
Sbjct: 60  CLNCAQAPTDTPCGTCPSCRDLA--TGGPGSLDVVEIDAASHNGVDDARDLRERAAFAPA 117

Query: 129 MEDFQLDLMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
            + +++ ++         G     + V+   +    I ATT    +   ++ R
Sbjct: 118 RDRYKIFILDEAHMVTAQGFNALLKLVEEPPAHVKFIFATTEPEKVIGTIRSR 170


>gi|281414720|ref|ZP_06246462.1| DNA polymerase III, subunit gamma/tau [Micrococcus luteus NCTC
           2665]
          Length = 774

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 76/234 (32%), Gaps = 23/234 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP   E+  GQ      L+  +  AK R       LF GP G GKTT A+++AR
Sbjct: 4   ALYRRYRPDRFEDVIGQDHVTVPLRTAL--AKDRVN--HAYLFSGPRGCGKTTSARILAR 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEIL-----YPAM 129
              +N      P      D    L        DVL ID      +     L     +  +
Sbjct: 60  --CLNCAQGPTPTPCGECDSCRDLATGGPGSLDVLEIDAASHGGVEDARGLRERATFAPV 117

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            D    L++ E             + V+        I ATT    +   ++ R       
Sbjct: 118 RDRYKILIIDEAHMVTAAGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSR-THHYPF 176

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
                E L   +++      ++V       +     G+ R    +L ++   A+
Sbjct: 177 RLVPPEPLIAYLEQLCAEEAVSVEKGVLPLVVRAGTGSVRDTLSVLDQLIAGAQ 230


>gi|170760265|ref|YP_001788865.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169407254|gb|ACA55665.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 601

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 62/267 (23%), Positives = 97/267 (36%), Gaps = 31/267 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH-------VLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  E    L   ++  K+    +D        VL VGPPG GKT LA+ +A E 
Sbjct: 157 TFDDVAGADEEKEELAEIVDFLKSPKRYIDMGARIPKGVLLVGPPGTGKTLLAKAIAGEA 216

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG       V   A  +  L    +     ++FIDEI  +       L    +
Sbjct: 217 GVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNSPCIIFIDEIDAVGRQRGAGLGGGHD 276

Query: 131 DFQLD----LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
           + +      L+  +G  A    I      +IAAT R  +L   L    RF   I +   +
Sbjct: 277 EREQTLNQLLVEMDGFGANEGII------MIAATNRPDILDPALLRPGRFDRQIVVGAPD 330

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           ++  + I++  +K   LA               T      L+      A     + I  E
Sbjct: 331 VKGREAILKVHSKNKHLAEEISLGILAKRTPGFTGADLENLMNESALLAVRKRKELIDME 390

Query: 245 IADAALLRLAIDKMG----FDQLDLRY 267
             + A+ R+           D+ D + 
Sbjct: 391 DLEEAVTRVIAGPEKKSRVIDEEDRKL 417


>gi|57168040|ref|ZP_00367179.1| DNA polymerase III gamma and tau subunits (dnaX) [Campylobacter
           coli RM2228]
 gi|57020414|gb|EAL57083.1| DNA polymerase III gamma and tau subunits (dnaX) [Campylobacter
           coli RM2228]
          Length = 518

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 51/235 (21%), Positives = 89/235 (37%), Gaps = 27/235 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     RP+T +E  GQ    ++LK  +         L H  LF G  G GKT+ A++ +
Sbjct: 4   ALAIKYRPKTFDELIGQKTVSTSLKYAL-----NHNRLAHAYLFSGLRGSGKTSSARIFS 58

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHR-----LSIIVEEILY-P 127
           R L  +    +GP     G     L  LE +  D++ +D         +  ++E+  Y P
Sbjct: 59  RALVCD----NGPSDTPCGTCKQCLAALEGKHIDIIEMDAASNRGLEDIQALIEQTKYTP 114

Query: 128 AMEDFQLDLMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +M  F++ ++               ++++   S    I ATT    L   +  R      
Sbjct: 115 SMARFKIFIIDEVHMLTPQAANALLKTLEEPPSYVKFILATTDPLKLPATVLSRTQHFRF 174

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
               + E L   ++       +   +EA   +A    G+ R    LL +   F +
Sbjct: 175 KQIPQNEIL-NHLKEILNKENVKFEEEALKFVARSGNGSLRDTLTLLDQAIIFCQ 228


>gi|156938218|ref|YP_001436014.1| ATPase AAA [Ignicoccus hospitalis KIN4/I]
 gi|156567202|gb|ABU82607.1| AAA family ATPase, CDC48 subfamily [Ignicoccus hospitalis KIN4/I]
          Length = 729

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 49/204 (24%), Positives = 77/204 (37%), Gaps = 26/204 (12%)

Query: 11  NVSQEDADISLLR--PR-TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLF 59
            +S++      +R  P+ T E+     EA   L+  +E      E   H        VL 
Sbjct: 169 EISKKPVKEEAVRGVPKVTWEDIGDLEEAKERLREIVELPMKHPEIFRHLGIEPPKGVLL 228

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFI 111
            GPPG GKT LA+ +A E+G  F + +GP I           L  +          ++FI
Sbjct: 229 YGPPGTGKTMLAKALANEIGAYFIAINGPEIMSKYYGESEQRLREIFEEARKNAPSIIFI 288

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DEI  ++   EE+     +     L+               R  +I AT R   +   L+
Sbjct: 289 DEIDAIAPKREEVTGEVEKRVVAQLLT-----LMDGLQERGRVVVIGATNRPDAIDPALR 343

Query: 172 D--RFGIPIRLNFYEIEDLKTIVQ 193
              RF   I +   +    K I++
Sbjct: 344 RPGRFDREIEIPPPDKRARKAILE 367



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/192 (23%), Positives = 68/192 (35%), Gaps = 15/192 (7%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLED 105
           E    +L  GPPG GKT LA+  A E   NF +  GP I           +  +      
Sbjct: 497 EPPKGILLFGPPGTGKTLLAKAAATESQANFIAVRGPEILSKWVGESEKAIREIFRKARQ 556

Query: 106 --RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
               ++F DEI  ++    + +        +D +V +  +       L R T+IAAT R 
Sbjct: 557 AAPTIVFFDEIDSIAARRGKDV-----SGVIDRIVNQLLTEMDGIEPLQRVTVIAATNRP 611

Query: 164 GLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRI 221
            LL   L    RF   I +   + +    I +   +   LA   +      M    T   
Sbjct: 612 DLLDPALLRPGRFDRLIYVPPPDKKARLEIFKVHTRRMPLADDVDLEKLADMTQGYTGAD 671

Query: 222 AGRLLRRVRDFA 233
              L R     A
Sbjct: 672 IAALCREAALIA 683


>gi|57241903|ref|ZP_00369843.1| DNA polymerase III gamma and tau subunits (dnaX) [Campylobacter
           upsaliensis RM3195]
 gi|57017095|gb|EAL53876.1| DNA polymerase III gamma and tau subunits (dnaX) [Campylobacter
           upsaliensis RM3195]
          Length = 505

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 51/234 (21%), Positives = 91/234 (38%), Gaps = 25/234 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP+T +E  GQ    ++L+  + + +         LF G  G GKT+ A++ +R
Sbjct: 4   ALAIKYRPKTFDELIGQKAVSASLRYALNSKRLAHAY----LFSGLRGSGKTSSARIFSR 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHR-----LSIIVEEILY-PA 128
            L  +     GP     G     +  LE +  D++ +D         +  ++E+  Y P+
Sbjct: 60  ALVCD----EGPNATPCGTCKQCIAALEGKHIDIIEMDAASNRGLEDIQSLIEQTKYAPS 115

Query: 129 MEDFQLDLMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           M  F++ ++               ++++   S    I ATT    L   +  R       
Sbjct: 116 MARFKIFIIDEVHMLTPQAANALLKTLEEPPSYVKFILATTDPLKLPATVLSRTQHFRFK 175

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
              + E L T ++      G+   +EA   IA    G+ R    LL +   F+E
Sbjct: 176 QIAQSEIL-THLKDILNKEGVKFEEEALKFIARSGNGSLRDTLTLLDQAIIFSE 228


>gi|257869778|ref|ZP_05649431.1| DNA polymerase III [Enterococcus gallinarum EG2]
 gi|257803942|gb|EEV32764.1| DNA polymerase III [Enterococcus gallinarum EG2]
          Length = 579

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 40/259 (15%), Positives = 78/259 (30%), Gaps = 30/259 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           R +  E+  GQ      LK  IE        + H  LF GP G GKT+ A++ A+ +   
Sbjct: 18  RSQRFEDVVGQKAITQTLKNAIE-----QNQISHAYLFTGPRGTGKTSAAKIFAKAINCP 72

Query: 82  -------------FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
                         RS +        ++ A   N  + ++ FI +    +    E     
Sbjct: 73  NQVNGEPCNECEMCRSITAGTQEDVIEIDAASNNGVE-EIRFIRDRANYAPTQAEYKVYI 131

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +++  +          ++++        I ATT    +   +  R            + +
Sbjct: 132 VDEVHMLSTGAFNALLKTLEEPRKNVVFILATTEPHKIPATIISRTQRFDFKRINTQDIV 191

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
                         +            +   R A   +R     A+ A A +  +     
Sbjct: 192 DH--------LKTVLDGSQIAYEEEALQVIARAAEGGMRDALSIADQAIAFSDGKVTTQD 243

Query: 249 ALLRLAIDKMGFDQLDLRY 267
           AL       + ++ +D   
Sbjct: 244 ALEVTG--SLSYEMMDRLM 260


>gi|197294205|ref|YP_001798746.1| Putative IMP dehydrogenase/GMP reductase [Candidatus Phytoplasma
           australiense]
 gi|171853532|emb|CAM11383.1| Putative IMP dehydrogenase/GMP reductase [Candidatus Phytoplasma
           australiense]
          Length = 706

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 93/249 (37%), Gaps = 22/249 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDHV--------LFVGPPGLGKTTLAQVVARE 77
           T ++  G       L+  I   K     L +         L  GPPG GKT L + ++ E
Sbjct: 278 TFKDVYGMESEKEELEDLIFYFKESNNNLVNFDKIRPKGYLLYGPPGTGKTFLLKALSNE 337

Query: 78  LGVNF------RSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAM 129
               F      +     V     +   +    E  D+ ++FIDEI  ++   ++      
Sbjct: 338 CNAYFIEFEPSKLDKTYVGEGVEEWEKIWMEAERHDKTIIFIDEISGMANREDKNSNKTS 397

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
            +   +++       RS K    +  L+ AT  +  +   L+ RF   I+++  + E+++
Sbjct: 398 INIVNNILTKLDGFNRSDK----KIVLMGATNHIDQIDKALRSRFSKEIKIDLIKDEEIE 453

Query: 190 TIVQRGAKLTGLAVTDE-AACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             ++   +   ++        EIA R +G    + R L  + + A     K  T      
Sbjct: 454 GFLKFLIEPYQISYHTYLHLKEIANRCKGK-NYSNRDLTTIINDAYNKTNKFKTLNPKHE 512

Query: 249 ALLRLAIDK 257
            +L   +D+
Sbjct: 513 VMLPSDLDE 521


>gi|148381465|ref|YP_001256006.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A str.
           ATCC 3502]
 gi|153933552|ref|YP_001385840.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A str.
           ATCC 19397]
 gi|153937590|ref|YP_001389247.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A str.
           Hall]
 gi|168180994|ref|ZP_02615658.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum NCTC
           2916]
 gi|226950981|ref|YP_002806072.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A2 str.
           Kyoto]
 gi|148290949|emb|CAL85085.1| cell division protein [Clostridium botulinum A str. ATCC 3502]
 gi|152929596|gb|ABS35096.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A str.
           ATCC 19397]
 gi|152933504|gb|ABS39003.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A str.
           Hall]
 gi|182668051|gb|EDT80030.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum NCTC
           2916]
 gi|226843941|gb|ACO86607.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A2 str.
           Kyoto]
 gi|322807850|emb|CBZ05425.1| cell division protein FtsH [Clostridium botulinum H04402 065]
          Length = 601

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 62/267 (23%), Positives = 97/267 (36%), Gaps = 31/267 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH-------VLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  E    L   ++  K+    +D        VL VGPPG GKT LA+ +A E 
Sbjct: 157 TFDDVAGADEEKEELAEIVDFLKSPKRYIDMGARIPKGVLLVGPPGTGKTLLAKAIAGEA 216

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG       V   A  +  L    +     ++FIDEI  +       L    +
Sbjct: 217 GVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNSPCIIFIDEIDAVGRQRGAGLGGGHD 276

Query: 131 DFQLD----LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
           + +      L+  +G  A    I      +IAAT R  +L   L    RF   I +   +
Sbjct: 277 EREQTLNQLLVEMDGFGANEGII------MIAATNRPDILDPALLRPGRFDRQIVVGAPD 330

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           ++  + I++  +K   LA               T      L+      A     + I  E
Sbjct: 331 VKGREAILKVHSKNKHLAEEISLGILAKRTPGFTGADLENLMNESALLAVRKRKELIDME 390

Query: 245 IADAALLRLAIDKMG----FDQLDLRY 267
             + A+ R+           D+ D + 
Sbjct: 391 DLEEAVTRVIAGPEKKSRVIDEEDRKL 417


>gi|312137192|ref|YP_004004529.1| ATPase AAA [Methanothermus fervidus DSM 2088]
 gi|311224911|gb|ADP77767.1| AAA family ATPase, CDC48 subfamily [Methanothermus fervidus DSM
           2088]
          Length = 732

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 57/220 (25%), Positives = 85/220 (38%), Gaps = 26/220 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
           T E+  G  EA   ++  IE      E            VL  GPPG GKT LA+ VA E
Sbjct: 202 TYEDIGGMKEAIQKVREMIEIPLKNPELFERLGIEPPKGVLLHGPPGTGKTLLAKAVANE 261

Query: 78  LGVNFRSTSGPVIAKA------GDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM 129
              +F + +GP I           L  +    E+    ++FIDEI  ++   EE+     
Sbjct: 262 SDAHFIAINGPEIMSKYVGGSEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVE 321

Query: 130 EDFQLDLMV-GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
                 L+   +G  AR       +  +I AT R   L   L+   RF   I +   + +
Sbjct: 322 RRIVAQLLTLMDGLKAR------GQVIVIGATNRPDALDPALRRPGRFDREIEIGVPDRD 375

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
           + K I++   +   LA  D    E+A  + G        L
Sbjct: 376 ERKEILEIHTRGMPLA-DDVDLDELADVTHGFVGADLEAL 414



 Score = 53.9 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/186 (22%), Positives = 69/186 (37%), Gaps = 21/186 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIE--------AAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           T ++  G  +    L+  +E          K   +    VL  GPPG GKT LA+ VA E
Sbjct: 474 TWDDVGGLEDVKQELRETVEWPLKYPEKFKKFGIKPPKGVLLYGPPGTGKTLLAKAVANE 533

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM 129
            G NF +  GP +           +  +          ++F DEI  ++     I   + 
Sbjct: 534 SGANFIAIKGPELLSKWVGESEKGVREVFRKARQTAPTIVFFDEIDAIASTRTGI---SA 590

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
           +      +V +  +       L    ++AAT R  ++   L    RF   I++   + E 
Sbjct: 591 DSGVTQRVVNQLLTEIDGLEELEDVVVLAATNRPDIIDPALLRPGRFDRQIKIGKPDKET 650

Query: 188 LKTIVQ 193
              I +
Sbjct: 651 RLKIFK 656


>gi|268325558|emb|CBH39146.1| putative replication factor C, large subunit [uncultured archaeon]
          Length = 466

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 3/85 (3%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +      RP+ L E  G  +A   L  + +      +A   V+ +GPPG GKT+ A  +A
Sbjct: 6   EEWTEKYRPKKLSEVVGNEKAIEELNSWADGVAKSKKA---VILLGPPGCGKTSAAYALA 62

Query: 76  RELGVNFRSTSGPVIAKAGDLAALL 100
            E        +      AG + +++
Sbjct: 63  SERDWEVIELNASDQRNAGVIRSIV 87


>gi|313681672|ref|YP_004059410.1| DNA polymerase iii, tau subunit [Sulfuricurvum kujiense DSM 16994]
 gi|313154532|gb|ADR33210.1| DNA polymerase III, tau subunit [Sulfuricurvum kujiense DSM 16994]
          Length = 549

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 77/223 (34%), Gaps = 49/223 (21%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVV 74
           +      RPR  EE  GQ      L + +++ +     L H  LF G  G GKT+ A++ 
Sbjct: 5   EVLALKYRPRRFEELIGQESISQTLSLALDSKR-----LSHAYLFSGLRGSGKTSTARIF 59

Query: 75  ARELGVNFRSTSGP------------------------VIAKAGDLAALLTNLEDRD--- 107
           A+ L      TS P                           K  D+  L+ + + R    
Sbjct: 60  AKSLICENGPTSAPCDVCSHCVMANEGRHIDIIEMDAASSRKIDDIRDLIEHTKYRPASA 119

Query: 108 ---VLFIDEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLS-----RFTLI 157
              +  IDE+H L+      L   +E+    +  ++      +     LS     RF  I
Sbjct: 120 NVKIFIIDEVHMLTKEAHNALLKTLEEPPEYVKFILATTDPLKLPPTILSRTQHFRFKRI 179

Query: 158 AATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
           +    V  L++ L       +    Y+ E L  + + G+    
Sbjct: 180 SHPNIVHHLSHILH------LENIEYQAEALDILARSGSGSLR 216


>gi|167569714|ref|ZP_02362588.1| DNA polymerase III subunits gamma and tau [Burkholderia
           oklahomensis C6786]
          Length = 553

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 85/229 (37%), Gaps = 27/229 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+      GQ      L   ++  +     L H  LF G  G+GKTTL+++ A+ L   
Sbjct: 11  RPKDFASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAMEDFQL 134
              TS P     G   A     E R V +++        +  ++ ++E  +Y  ++    
Sbjct: 66  TGVTSQP----CGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             M+ E             ++++        I ATT    +   +  R  +   L     
Sbjct: 122 VYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPA 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
             + + ++R      +A   +A   +A  ++G+ R A  L  +   ++ 
Sbjct: 181 GHIVSHLERILGEEEIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSA 229


>gi|297833302|ref|XP_002884533.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330373|gb|EFH60792.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 923

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 54/292 (18%), Positives = 106/292 (36%), Gaps = 42/292 (14%)

Query: 11  NVSQEDADISLLRPRTL--EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGK 67
           N S E+ D+  LR + +  E+  G  +    +  FI   + R  +   ++   GPPG+GK
Sbjct: 395 NFSYENFDV--LRAKKILDEDHYGLSDVKERILEFIAVGRLRGTSQGKIICLSGPPGVGK 452

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLA---------------ALLTNLE-DRDVLFI 111
           T++ + +AR L   F   +   ++  G++                  L ++  +  ++ I
Sbjct: 453 TSIGRSIARALDRKFFRFAVGGLSDVGEIKGHCQTYVGAMPGKMVQCLKSVGTENPLILI 512

Query: 112 DEIHRLSI--------IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
           DEI +L           + E++ P      LD          +V I+LS+   +     +
Sbjct: 513 DEIDKLDRCHTGDPASALLEVMDPEQNANFLD-------HFLNVTIDLSKVLFVCTANVI 565

Query: 164 GLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAG 223
            ++  PL DR  +     +   E +       A+   +  T         +   +     
Sbjct: 566 EMIPGPLLDRMEVIDLSGYVTDEKMH-----IARDYLVKKTCRDCGIKPEQVDLSDAALL 620

Query: 224 RLLRRVRDFAEVAH-AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARN 274
            L+      A V +  K I +     AL  +    + F   D +    +A+ 
Sbjct: 621 SLIENYCREAGVRNLQKQIEKIYRKVALELVRQGAVSFYVTDTKDTKSLAKT 672


>gi|254168540|ref|ZP_04875384.1| AAA family ATPase, CDC48 subfamily [Aciduliprofundum boonei T469]
 gi|197622595|gb|EDY35166.1| AAA family ATPase, CDC48 subfamily [Aciduliprofundum boonei T469]
          Length = 727

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 51/276 (18%), Positives = 88/276 (31%), Gaps = 29/276 (10%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHV--------LFVGPPGLGKTTLAQVVARELG 79
           ++  G  +    L+  +E      +   H+        L  GPPG GKT LA+ VA E  
Sbjct: 455 DDIGGLEQVKQELREVVEWPMKYRKLFAHMKVKIPKGILLYGPPGTGKTLLAKAVATESE 514

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAMED 131
            NF S  GP             +  +          V+FIDEI  ++ +    +   + +
Sbjct: 515 ANFISVKGPEFLSKWVGESEKAVREVFRKARQAAPAVIFIDEIDAIAPMRGRDIGSHVTE 574

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
             +  ++ E          L   T+IAAT R  +L   L    RF   + +   + +  K
Sbjct: 575 RVVSQILTE----MDGLEELHNVTVIAATNRPDILDPALLRPGRFDRIVYVPIPDKDARK 630

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA--EVAHAKTITREIAD 247
            I +   +   LA   +           T      +       A  E   +     E  D
Sbjct: 631 EIFKIHLRGRPLAEDVDIDKLAEKTEGYTGADIEAVCNEATILALREFIQSGKNPDEPKD 690

Query: 248 AALLRLAIDK-----MGFDQLDLRYLTMIARNFGGG 278
           A +     ++         + +      +   F   
Sbjct: 691 AKIEMKHFEEALKKIKPLSKEEREMYERMVDRFRKR 726



 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 57/248 (22%), Positives = 89/248 (35%), Gaps = 34/248 (13%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLF 59
           +S   ++E   IS++   T E+  G  E    ++  +E      E            VL 
Sbjct: 165 ISEKPAKESQGISMV---TYEDIGGLKEEIKKIREMVELPLRHPELFERLGIEPPKGVLL 221

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLEDR--DVLFI 111
            GPPG GKT LA+ VA E   +F   SGP I          +L  +    +D    ++FI
Sbjct: 222 YGPPGTGKTLLAKAVANEANAHFIYLSGPEIMSKFYGQSEENLREIFKEAQDNAPSIIFI 281

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DEI  ++   +E+            +V +  +      +  +  +I AT R   L   L+
Sbjct: 282 DEIDSIAPKRDEVSGEVERR-----VVAQLLALMDGLESRGKVVVIGATNRPNALDPALR 336

Query: 172 -----DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTP-----RI 221
                DR            +++  I  RG  L      ++ A                  
Sbjct: 337 RPGRFDREIEIGIPGKNARKEILEIHTRGVPLAEDVDLEKLADMTHGYVGADLAALVKEA 396

Query: 222 AGRLLRRV 229
           A R LRRV
Sbjct: 397 AMRALRRV 404


>gi|221061817|ref|XP_002262478.1| cell division protein ftsh [Plasmodium knowlesi strain H]
 gi|193811628|emb|CAQ42356.1| cell division protein ftsh, putative [Plasmodium knowlesi strain H]
          Length = 862

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 58/230 (25%), Positives = 88/230 (38%), Gaps = 20/230 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAE-------ALDHVLFVGPPGLGKTTLAQVVA 75
           RP   EE  G  E+   L   ++  + R +           VL VGPPG GKT LA+ VA
Sbjct: 148 RPIRFEEIAGIDESKLELLEVVDFIRNREKYQEMGARMPKGVLLVGPPGSGKTMLARAVA 207

Query: 76  RELGVNFRSTSGPVI------AKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYP 127
            E  V +  TSGP          A  +  L  +       ++FIDEI  +          
Sbjct: 208 TEANVPYIYTSGPEFIEIYVGQGAKRIRQLFAHARSVAPSIVFIDEIDAIGGKRSSGSVN 267

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
                + D  + +         N     +I AT R+  L + L    RF   + +   ++
Sbjct: 268 GAGQREHDQTLNQLLVEMDGFSNTVHIMVIGATNRIDTLDSALLRPGRFDRIVYVPLPDV 327

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
              K I++   K      +D  A +I   +R TP  +G  L  V + A +
Sbjct: 328 NGRKRILEIYIKKIK---SDLKAEDIDKIARLTPGFSGADLENVVNEATI 374


>gi|149375203|ref|ZP_01892975.1| DNA polymerase III subunits gamma and tau [Marinobacter algicola
           DG893]
 gi|149360567|gb|EDM49019.1| DNA polymerase III subunits gamma and tau [Marinobacter algicola
           DG893]
          Length = 654

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 82/227 (36%), Gaps = 27/227 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPRT E+  GQ      L+  I A     + L H  LF G  G+GKTT+ +++AR L   
Sbjct: 23  RPRTFEDMVGQEHV---LQALIHA--LDNQRLHHAYLFTGTRGVGKTTIGRLLARCLNCE 77

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEIL-----YPAMEDFQL 134
              T+ P     G  ++     E R  D++ ID   R  +     L     Y        
Sbjct: 78  TGVTATP----CGTCSSCQEIQEGRFVDLIEIDAASRTGVDDMRELTDNVQYSPTRGRFK 133

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             ++ E             ++++        + ATT    L   +  R  +   L     
Sbjct: 134 VYLIDEVHMLTNQSFNAFLKTLEEPPEHVKFLLATTDPQKLPVTVLSRC-LQFNLKRMTP 192

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           E +   ++      G+   + A   +A  + G+ R A  L  +   F
Sbjct: 193 EHIAGHLRYVLTQEGIPFEEPALWLLARAADGSMRDALSLTDQAIAF 239


>gi|116332057|ref|YP_801775.1| ATP-dependent Zn protease [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|122280211|sp|Q04Q03|FTSH_LEPBJ RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|116125746|gb|ABJ77017.1| ATP-dependent Zn protease [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 652

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 60/249 (24%), Positives = 95/249 (38%), Gaps = 23/249 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAK-------ARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T E+  G  EA   L   IE  K         A     VL VGPPG GKT LA+ VA E 
Sbjct: 178 TFEDVAGCEEAKEELVEIIEFLKDPKKFHAIGARIPTGVLLVGPPGTGKTLLARAVAGEA 237

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG       V   A  +  L    +     ++FIDEI  +  +    L    +
Sbjct: 238 GVPFFSISGSDFVEMFVGVGASRVRDLFDQGKKNSPCIIFIDEIDAVGRLRGAGLGGGHD 297

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  M+ E       +       ++AAT R  +L   L    RF   + ++  +I+
Sbjct: 298 EREQTLNQMLVEMDGFEKNEG----VIVMAATNRADVLDPALLRPGRFDRQVMVDLPDIK 353

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++  ++   +                T      L+      A   + K +T+E  
Sbjct: 354 GREEILKVHSRKVPMTSDISLHSIARGTPGFTGADLANLINEGALLAARKNKKRVTQEEL 413

Query: 247 DAALLRLAI 255
           + A  ++ +
Sbjct: 414 EEARDKVMM 422


>gi|16330069|ref|NP_440797.1| cell division protein FtsH [Synechocystis sp. PCC 6803]
 gi|2492512|sp|P73437|FTSH4_SYNY3 RecName: Full=ATP-dependent zinc metalloprotease FtsH 4
 gi|1652556|dbj|BAA17477.1| cell division protein; FtsH [Synechocystis sp. PCC 6803]
          Length = 628

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 53/259 (20%), Positives = 87/259 (33%), Gaps = 20/259 (7%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAK-------ARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  EA + L   ++  K         A+    VL VGPPG GKT LA+  A E 
Sbjct: 172 TFDDVAGVEEAKTELSEVVDFLKFPQRYTALGAKIPKGVLLVGPPGTGKTLLAKAAAGEA 231

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F   SG         A A  +  L    + +   ++FIDE+  +        +    
Sbjct: 232 GVPFFIISGSEFVELFVGAGAARVRDLFEQAKKQAPCIVFIDELDAIGKSRASGAFMGGN 291

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
           D +   +              +   ++AAT R   L   L    RF   + ++  ++   
Sbjct: 292 DEREQTLNQLLTEMDGFSAAGATVIVLAATNRPETLDPALLRPGRFDRQVLVDRPDLAGR 351

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             I++  AK   L    E                  L+      A      ++T      
Sbjct: 352 LKILEIYAKKIKLDKEVELKNIATRTPGFAGADLANLVNEAALLAARNKQDSVTEADFRE 411

Query: 249 ALLRLAIDKMGFDQLDLRY 267
           A+ R+     G ++     
Sbjct: 412 AIERVVA---GLEKKSRVL 427


>gi|307184045|gb|EFN70595.1| Protein YME1-like protein [Camponotus floridanus]
          Length = 753

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 57/255 (22%), Positives = 94/255 (36%), Gaps = 30/255 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  EA   L   +E  K          +    VL VGPPG GKT LA+ VA E 
Sbjct: 298 TFSDVKGVDEAKQELLNIVEFLKNPDKFSALGGKLPKGVLLVGPPGTGKTLLARAVAGEA 357

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F   +GP          A  +  L    +++   V+FIDEI  +       +     
Sbjct: 358 GVPFFHVAGPEFDEILVGQGARRVRDLFRAAKEKAPCVVFIDEIDSVGAKRTNSVLHPYA 417

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
           +  ++ ++ E    R  +       ++ AT R   L   L    RF + I +N  +    
Sbjct: 418 NQTINQLLSEMDGFRQNEG----VIVLGATNRRKDLDKALMRPGRFDVEIYINKPDYFGR 473

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF----AEVAHAKTITRE 244
           K I+        L+       +    +R T    G  L  + +     A +  A  ++ +
Sbjct: 474 KEILD-----LYLSRILTHEVDTVYLARCTTGFTGADLENMVNQAALRAAIDEADCVSMK 528

Query: 245 IADAALLRLAIDKMG 259
             + A  ++ +   G
Sbjct: 529 HLEYARDKVLMGPEG 543


>gi|284931635|gb|ADC31573.1| DNA polymerase III subunits gamma and tau [Mycoplasma gallisepticum
           str. F]
          Length = 599

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 89/222 (40%), Gaps = 21/222 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP  L    GQ    +   + ++A+ A  +     +F G  G+GKT++++++A+      
Sbjct: 9   RPTNLSSIIGQSHITN---ILLKAS-AHDQLATAYIFQGSRGIGKTSISKILAKAYNCLN 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
           +   G V  +      L+   + +D+  +D      +  +  I++ I Y  M   +   +
Sbjct: 65  K-KDGDVCNQCSAC-ELINENKSQDIYELDAATNNGVDEIRKIIDAINYAPMNLSKKVYI 122

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             R+++        I ATT    +   +  R          + +DL
Sbjct: 123 LDEAHMLSNGAWNALLRTLEEPPKHVVFIFATTEFNKIPLTVVSRCQ-SFNFKKLDKDDL 181

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
             +++   K   + + D A  +IA  + G+ R A  +L+++ 
Sbjct: 182 VDVLKNVVKQEKIKIEDLAIDKIADFASGSARDALSILQQLA 223


>gi|161527523|ref|YP_001581349.1| ATPase AAA [Nitrosopumilus maritimus SCM1]
 gi|160338824|gb|ABX11911.1| AAA family ATPase, CDC48 subfamily [Nitrosopumilus maritimus SCM1]
          Length = 713

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 48/188 (25%), Positives = 73/188 (38%), Gaps = 24/188 (12%)

Query: 24  PR-TLEEFTGQVEACSNLKVFIEA--------AKARAEALDHVLFVGPPGLGKTTLAQVV 74
           PR T +E  G       ++  +E          K   EA   VL  GPPG GKT LA+ V
Sbjct: 172 PRITYDELGGLKNEVQKIREMVELPMRHPELFDKIGVEAPKGVLLYGPPGTGKTLLAKAV 231

Query: 75  ARELGVNFRSTSGPVIAKA------GDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILY 126
           A E   +F S SGP I           +  +    E+    ++FIDEI  ++   +E+  
Sbjct: 232 AGETNAHFISLSGPEIMGKYYGESEEKIREIFNQAEENSPSIIFIDEIDSIAPKRDEVSG 291

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
              +     L+            +  +  +IAAT R   +   L+   RF   I +   +
Sbjct: 292 EVEKRIVSQLLT-----LMDGMKSRGKVVVIAATNRPDSIDPALRRPGRFDREIEIGIPD 346

Query: 185 IEDLKTIV 192
            E    I+
Sbjct: 347 DEGRFEIL 354



 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 49/240 (20%), Positives = 87/240 (36%), Gaps = 37/240 (15%)

Query: 2   MDREGLLSRNVSQEDADISL--LRPRTL------------EEFTGQVEACSNLKVFIEAA 47
           +  E L    ++ ED   +L  +RP  L            ++  G  E    L+  +E  
Sbjct: 410 ISAEILQKIEITSEDFRDALKEVRPSALREVQVQIPNVSWDDVGGLDELKEELREAVEWP 469

Query: 48  KARAEALDHV--------LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKA 93
               EA D+V        L  GPPG GKT +A+ +A+    NF S  GP +         
Sbjct: 470 IKHKEAFDYVDVETPKGILLHGPPGTGKTLIAKALAKMTESNFISIKGPELLSKWVGESE 529

Query: 94  GDLAALLTNLEDRD--VLFIDEIHRLSIIV-EEILYPAMEDFQLDLMVGEGPSARSVKIN 150
             +  +          ++F+DE+  L            + +  +  ++ E          
Sbjct: 530 KGVREIFRKARQAAPCIIFLDEVDALVPRRGSGGSESHVTESVVSQILTEIDGLE----E 585

Query: 151 LSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAA 208
           L    ++ AT R+ ++ + L    RF   I +   + +  + I +   K   LA   + A
Sbjct: 586 LHNVLIVGATNRLDIVDDALLRPGRFDRIIEVPNPDAKGRRNIFEIHTKKKPLASDVDIA 645


>gi|146185105|ref|XP_001030952.2| ATP-dependent metalloprotease FtsH family protein [Tetrahymena
           thermophila]
 gi|146142708|gb|EAR83289.2| ATP-dependent metalloprotease FtsH family protein [Tetrahymena
           thermophila SB210]
          Length = 741

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 54/268 (20%), Positives = 93/268 (34%), Gaps = 27/268 (10%)

Query: 6   GLLSRNVS-QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAK-------ARAEALDHV 57
            +  R+   QE+ +I    P    +  G  E    L   ++  K       A A+    +
Sbjct: 288 RIFDRSSDIQEEKNI----PTRFTDVIGIDEFKEELTELVDYLKNPKKYQDAGAKLPKGI 343

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA------KAGDLAALLTNLEDR--DVL 109
           L VGPPG GKT LA+ +A E G +F   SG           A  +  L          ++
Sbjct: 344 LLVGPPGTGKTLLARALAGEAGCSFYYKSGSEFDEMFVGVGASRVRELFKKARQTAPSII 403

Query: 110 FIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           FIDEI  +       L  +     ++ ++ E    R          +I AT     +   
Sbjct: 404 FIDEIDSVCGKR-SALDQSHSRDTVNQILAEMDGFRERD----NVIVIGATNFEKSIDPA 458

Query: 170 LQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
           ++   RF   I + + +I   + +     K      T  +       S  T      ++ 
Sbjct: 459 IKRPGRFDKTINVPYPDIRGREQLFDYYLKRIKTDQTVMSKELAKQTSGFTGADIANMVN 518

Query: 228 RVRDFAEVAHAKTITREIADAALLRLAI 255
                A   + +   +   D AL R+++
Sbjct: 519 ISILNAIKHNRQVSNKLDFDFALDRISM 546


>gi|24475504|dbj|BAC22717.1| dnaX [Wolbachia endosymbiont of Callosobruchus chinensis]
          Length = 516

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 56/268 (20%), Positives = 97/268 (36%), Gaps = 36/268 (13%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP + ++  GQ          +E A    +    +L  G  G+GKTT A+++A  L  + 
Sbjct: 30  RPSSFKDLVGQDILV----RVLENAFILNKIPQSILLSGSSGVGKTTTARIIALCLNCS- 84

Query: 83  RSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLS-----IIVEEILYPAMEDFQLD 135
               GP+    G     L   N    DV+ ID     S     +I+ +I Y  +      
Sbjct: 85  ---LGPIFEPCGSCENCLAIKNSSHPDVIEIDAASHTSIDDVKVILGDICYSPISSKFKV 141

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR---FGIPIRLNFYEIEDL--KT 190
            ++ E     S   N    TL    + V  +  P + +     I  R   +++ ++    
Sbjct: 142 YIIDEVHMLSSSAFNALLKTLEEPPSSVKFILAPPEIKKIPITIIARCQRFDLHNIPVAK 201

Query: 191 IVQR---GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           IV+R    A+    ++   A   IA  S  + R A  L+ +   +++     T       
Sbjct: 202 IVERLNDVAQKESYSIEKGALELIARHSGNSMRNALFLMNQAVLYSKDGAIST------- 254

Query: 248 AALLRLAIDKMGFDQLDL--RYLTMIAR 273
               +  ID +G    D+    L  I  
Sbjct: 255 ----KNVIDILGLVDKDIIFDLLGAILE 278


>gi|167619803|ref|ZP_02388434.1| DNA polymerase III subunits gamma and tau [Burkholderia
           thailandensis Bt4]
          Length = 378

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 85/229 (37%), Gaps = 27/229 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+      GQ      L   ++  +     L H  LF G  G+GKTTL+++ A+ L   
Sbjct: 11  RPKDFASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAMEDFQL 134
              TS P     G   A     E R V +++        +  ++ ++E  +Y  ++    
Sbjct: 66  TGVTSQP----CGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             M+ E             ++++        I ATT    +   +  R  +   L     
Sbjct: 122 VYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPA 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
             + + ++R      +A   +A   +A  ++G+ R A  L  +   ++ 
Sbjct: 181 GHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSA 229


>gi|71033715|ref|XP_766499.1| replication factor C subunit 2 [Theileria parva strain Muguga]
 gi|68353456|gb|EAN34216.1| replication factor C subunit 2, putative [Theileria parva]
          Length = 335

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 80/228 (35%), Gaps = 24/228 (10%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
            +++   +   RP+ + +   Q +A S ++  +E        + H++F GPPG GKT+ A
Sbjct: 3   ATKDVPWVEKYRPKKISDVIFQTQAVSIMEQIVE-----TFNMPHMIFHGPPGTGKTSAA 57

Query: 72  QVVAR-----ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
             +AR     E              +  D+         R    I+  +         + 
Sbjct: 58  LAMARQIYGLEGMRERVLELNASDERGIDVVRDRIKTYTR----INISNNRVNPETNRVM 113

Query: 127 PAMEDFQLDL--MVGEGPSARSVKI-----NLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           P  +   LD   M+     A   ++     ++SRF LI     +  +  P+  R  +   
Sbjct: 114 PNYKMIILDEADMITADAQAALRRVIENYSSISRFVLIC--NYLHKIIGPIYSRCSV-FH 170

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
               E       ++      G+    +A   +   S G  R +  +L+
Sbjct: 171 FKPIETNSQVDRLKYICNQEGITFDQKALEFLTTVSSGDMRKSITILQ 218


>gi|46109186|ref|XP_381651.1| hypothetical protein FG01475.1 [Gibberella zeae PH-1]
          Length = 790

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 55/252 (21%), Positives = 96/252 (38%), Gaps = 30/252 (11%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVARE 77
              ++  G  EA   L+  +E  K         A+    VL VGPPG GKT LA+ VA E
Sbjct: 304 TRFQDVHGCDEAKEELQEVVEFLKNPEKFSDLGAKLPKGVLLVGPPGTGKTLLARAVAGE 363

Query: 78  LGVNFRSTSGPVIA------KAGDLAALLTNLEDRD--VLFIDEIHRL----SIIVEEIL 125
            GV F   SG           A  +  L T  +++   ++FIDE+  +    +   +   
Sbjct: 364 AGVPFFYMSGSEFDEIFVGVGAKRVRELFTAAKNKSPAIVFIDELDAIGGKRNPRDQ--- 420

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183
             A     L+ ++ E           S+  +I AT    +L   L    RF   + ++  
Sbjct: 421 --AHAKQTLNQLLTELDGFDQD----SKIIIIGATNLPKMLDKALTRPGRFDRHVNVDLP 474

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           ++     I++  AK   ++   +     A     +      +L      A  A A  +++
Sbjct: 475 DVRGRIAILKHHAKKIKVSPDVDLEAIAARCPGQSGAELENMLNVAALRASRAKASFVSK 534

Query: 244 EIADAALLRLAI 255
           +  + A  R+ +
Sbjct: 535 QDMEWAYDRVTM 546


>gi|325066589|ref|ZP_08125262.1| DNA polymerase III, subunits gamma and tau [Actinomyces oris K20]
          Length = 352

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 41/173 (23%), Positives = 62/173 (35%), Gaps = 22/173 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T +E  GQ    + L   + A +         LF GP G GKTT A+++AR
Sbjct: 4   ALYRRYRPDTFQEVIGQDHVTAPLMAALRADRVTHAY----LFSGPRGCGKTTSARILAR 59

Query: 77  ELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PA 128
            L      T  P        DLA         DV+ ID      +     L       PA
Sbjct: 60  CLNCAQAPTDTPCGTCPSCRDLA--TGGPGSLDVVEIDAASHNGVDDARDLRERAAFAPA 117

Query: 129 MEDFQLDLMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
            + +++ ++         G     + V+   +    I ATT    +   ++ R
Sbjct: 118 RDRYKIFILDEAHMVTAQGFNALLKLVEEPPAHVKFIFATTEPEKVIGTIRSR 170


>gi|163744802|ref|ZP_02152162.1| DNA polymerase III subunits gamma and tau [Oceanibulbus indolifex
           HEL-45]
 gi|161381620|gb|EDQ06029.1| DNA polymerase III subunits gamma and tau [Oceanibulbus indolifex
           HEL-45]
          Length = 583

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 52/258 (20%), Positives = 86/258 (33%), Gaps = 26/258 (10%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
            + S         RP T  +  GQ      LK    A +         +  G  G GKTT
Sbjct: 2   TDTSAYRVLARKYRPETFADLVGQDAMVRTLKNAFAADRIAQA----FVMTGIRGTGKTT 57

Query: 70  LAQVVARELGV-NFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSII-----V 121
            A+++A+ +         GP     G        +E R  DV+ +D      +      +
Sbjct: 58  TARIIAKGMNCIGPDGNGGPTTDPCGVCEHCTAIMEGRHVDVMEMDAASNTGVANIREII 117

Query: 122 EEILYPAMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           + + Y A        ++ E             ++++        I ATT +  +   +  
Sbjct: 118 DSVHYRAASARYKVYIIDEVHMLSTGAFNALLKTLEEPPEHVKFIFATTEIRKVPVTVLS 177

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R      L   E E +  ++++ A      +TD+A   I   + G+ R A  LL    D 
Sbjct: 178 RCQ-RFDLRRIEPEVMIALLRKIATAETAEITDDALALITRAAEGSARDATSLL----DQ 232

Query: 233 AEVAHAKTITREIADAAL 250
           A    A     E   A L
Sbjct: 233 AISHGAGETGAEQVRAML 250


>gi|156095797|ref|XP_001613933.1| cell division protein FtsH [Plasmodium vivax SaI-1]
 gi|148802807|gb|EDL44206.1| cell division protein FtsH, putative [Plasmodium vivax]
          Length = 896

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 58/230 (25%), Positives = 88/230 (38%), Gaps = 20/230 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAE-------ALDHVLFVGPPGLGKTTLAQVVA 75
           RP   EE  G  E+   L   ++  + R +           VL VGPPG GKT LA+ VA
Sbjct: 156 RPIRFEEIAGIDESKLELLEVVDFIRNREKYQEMGARMPKGVLLVGPPGSGKTMLARAVA 215

Query: 76  RELGVNFRSTSGPVI------AKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYP 127
            E  V +  TSGP          A  +  L  +       ++FIDEI  +          
Sbjct: 216 TEANVPYIYTSGPEFIEIYVGQGAKRIRQLFAHARSVAPSIVFIDEIDAIGGKRSSGSVN 275

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
                + D  + +         N     +I AT R+  L + L    RF   + +   ++
Sbjct: 276 GAGQREHDQTLNQLLVEMDGFSNSIHIMVIGATNRIDTLDSALLRPGRFDRIVYVPLPDV 335

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
              K I++   K      +D  A +I   +R TP  +G  L  V + A +
Sbjct: 336 NGRKRILEIYIKKIK---SDLKAEDIDKIARLTPGFSGADLENVVNEATI 382


>gi|304320347|ref|YP_003853990.1| DNA polymerase III subunits gamma and tau [Parvularcula bermudensis
           HTCC2503]
 gi|303299249|gb|ADM08848.1| DNA polymerase III subunits gamma and tau [Parvularcula bermudensis
           HTCC2503]
          Length = 607

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 81/227 (35%), Gaps = 21/227 (9%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP++ ++  G       L+    A +         +  G  G+GKTT A+++AR L
Sbjct: 18  ARKYRPQSFDDLLGHEAMVRTLRNAFAADRIAHA----FILTGVRGVGKTTTARIIARAL 73

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEIL-----YPAMED 131
                +   P +    +        E R  DV  +D   R  +     L     Y  +E 
Sbjct: 74  NYETETIDRPTVDMPVEGRHCRAIAESRHPDVYEMDAASRTGVGDIRELIEGVRYAPIEG 133

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++   +    I ATT +  +   +  R      L  
Sbjct: 134 RYKVYIIDEVHMLSTNAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLSRCQ-RFDLRR 192

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           ++I  L   +   A+    A++ EA   IA  + G+ R A  LL + 
Sbjct: 193 FDITSLSAHLAGIAEKEEAAISKEALDMIAQAAEGSVRDALSLLDQA 239


>gi|313241103|emb|CBY33401.1| unnamed protein product [Oikopleura dioica]
          Length = 793

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 71/187 (37%), Gaps = 32/187 (17%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI  ++ R      +L F GPPG GKT++A+ +AR LG  +   S
Sbjct: 340 EDHYGMNDVKDRILEFICTSQLRGSVQGKILCFHGPPGTGKTSIAKSIARSLGRKYYRFS 399

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              ++   ++                        +  ++ IDEI +L    +        
Sbjct: 400 VGGMSDVAEIKGHRRTYVGAMPGKLVQCLKKTQSENPLILIDEIDKLGRGYQGDPSSALL 459

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V I+LS+   I     +  ++ PL+DR  +     +
Sbjct: 460 ELLDPEQNVGFLD-------HYLDVPIDLSKALFICTANDLSTISGPLRDRMEMIEVAGY 512

Query: 183 YEIEDLK 189
              E ++
Sbjct: 513 ITDEKVE 519


>gi|301123741|ref|XP_002909597.1| ATPase AFG2 protein [Phytophthora infestans T30-4]
 gi|262100359|gb|EEY58411.1| ATPase AFG2 protein [Phytophthora infestans T30-4]
          Length = 723

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 62/275 (22%), Positives = 98/275 (35%), Gaps = 31/275 (11%)

Query: 24  PRTL-EEFTGQVEACSNLKVFIEAAKARAEALDHV--------LFVGPPGLGKTTLAQVV 74
           PR L  +  GQ      L+  +E      EA   +        L  GPPG  KT  A+ +
Sbjct: 456 PRVLWSDIGGQDALKQALREAVEWPLQHPEAFTRMGIRPPKGVLLYGPPGCSKTLAAKAL 515

Query: 75  ARELGVNFRSTSGPVI--AKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILY 126
           A E G+NF +  GP +     G+    +  +  +       V+F DEI  L+        
Sbjct: 516 ATESGMNFIAIKGPELFSKWVGESEQQVREVFRKARAASPTVVFFDEIDALASTRGAGGS 575

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
            +  D  L  ++ E          L R  ++AAT R  LL   L    R    + ++  +
Sbjct: 576 SSASDRVLSQLLTELDGLE----PLKRVLVVAATNRPDLLDPALMRPGRIDRALYVSPPD 631

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA--EVAHAKTIT 242
           +   + I++   + T LA            +R +      L R     A  E   A  + 
Sbjct: 632 VPAREQILRIHTRKTPLASDVSLTELAIATARFSGAELQALCREAALHAVEEDRVAVNVG 691

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGG 277
           +     AL  +        Q+D R LT   +   G
Sbjct: 692 KRHFVRALSVVT------PQIDDRMLTFFEQFRDG 720



 Score = 43.1 bits (100), Expect = 0.056,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 65/174 (37%), Gaps = 15/174 (8%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR 106
           A   VL  GPPG GKT +A+ +AREL     + +GP +          +L A+       
Sbjct: 218 APKGVLLFGPPGTGKTLIARALARELNARVFTINGPEVVSKFVGESEANLRAVFAQAARE 277

Query: 107 --DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164
              ++ IDE+  +    +  +          L+      + S +       ++AAT R  
Sbjct: 278 APSLVLIDELDAICPKRDSRVGDMERRLVATLLTLMDGLSGSRQ-----VVVLAATNRPN 332

Query: 165 LLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSR 216
            L   ++   RF   + +      D   I++   +     +T     E++  + 
Sbjct: 333 ALDPAVRRPGRFDREVEIGIPRANDRLAILRVALRRLPHKLTQSELQELSSSAH 386


>gi|256833464|ref|YP_003162191.1| Microtubule-severing ATPase [Jonesia denitrificans DSM 20603]
 gi|256686995|gb|ACV09888.1| Microtubule-severing ATPase [Jonesia denitrificans DSM 20603]
          Length = 414

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 62/245 (25%), Positives = 89/245 (36%), Gaps = 27/245 (11%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAKARA--------EALDHVLFVGPPGLGKTTLAQVVA 75
           P T +   G  E  +  K  IE    RA        + +  VLF G PG GKT LA+++A
Sbjct: 157 PLTFDALGGYDEVKARAKELIETQLGRAGELKAIGAKPVKGVLFTGAPGTGKTHLARIIA 216

Query: 76  RELGVNFRSTSGP--VIAKAGD----LAALLTNLEDRD--VLFIDEIHRLSIIVEEILYP 127
              G  F   SGP  V    GD    L  L  +   R+  ++F DEI  ++         
Sbjct: 217 DVSGAVFYQVSGPSIVSKWVGDSEETLRRLFEDAAKRECAIIFFDEIDSIAARRSSDSNG 276

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
             +     L+              S   +IAAT RV  +   L    RF   I  +    
Sbjct: 277 ESKRVVAQLLTLLDGFKPD-----SNVIVIAATNRVEDIDEALLRPGRFDWEIAFDLPTE 331

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
            D   I++  A    +         I   +R T   +G +L  +   A +  A     +I
Sbjct: 332 RDRLEILKMKAGELQVGDELP----IDDLARATDGWSGAMLTAIWTEAALLAAGDQRSKI 387

Query: 246 ADAAL 250
           AD  L
Sbjct: 388 ADEDL 392


>gi|153941351|ref|YP_001392879.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum F str.
           Langeland]
 gi|152937247|gb|ABS42745.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum F str.
           Langeland]
 gi|295320856|gb|ADG01234.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum F str.
           230613]
          Length = 601

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 62/267 (23%), Positives = 98/267 (36%), Gaps = 31/267 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH-------VLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  E    L   ++  K+    +D        VL VGPPG GKT LA+ +A E 
Sbjct: 157 TFDDVAGADEEKEELAEIVDFLKSPKRYIDMGARIPKGVLLVGPPGTGKTLLAKAIAGEA 216

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG       V   A  +  L    +     ++FIDEI  +       L    +
Sbjct: 217 GVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNSPCIIFIDEIDAVGRQRGAGLGGGHD 276

Query: 131 DFQLD----LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
           + +      L+  +G  A    I      +IAAT R  +L   L    RF   I +   +
Sbjct: 277 EREQTLNQLLVEMDGFGANEGII------MIAATNRPDILDPALLRPGRFDRQIVVGAPD 330

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           ++  + I++  +K   LA   +           T      L+      A     + I  E
Sbjct: 331 VKGREAILKVHSKNKHLAEEIKLEVLAKRTPGFTGADLENLMNESALLAVRKKKELIDME 390

Query: 245 IADAALLRLAIDKMG----FDQLDLRY 267
             + A+ R+           D+ D + 
Sbjct: 391 DLEEAVTRVIAGPEKKSRVIDEEDRKL 417


>gi|229115998|ref|ZP_04245393.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus
           Rock1-3]
 gi|228667492|gb|EEL22939.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus
           Rock1-3]
          Length = 541

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 41/236 (17%), Positives = 86/236 (36%), Gaps = 20/236 (8%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +S   A     RP +  +  GQ    +     I  A    +     L  GP G GKTT+A
Sbjct: 6   MSNYVALYRAYRPNSFNDLVGQDHIKTT----IMNAIKLEKVAHAYLLSGPRGTGKTTVA 61

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII------VEEIL 125
           +++ + +      ++G    K  +   +  N +  D+L  D      +        +  L
Sbjct: 62  KIIGKGVNCLAPLSNGEPCQKCANCGDINNN-KFADILEFDAASNNGVEEIRQIRDQVHL 120

Query: 126 YPAMEDFQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
            P    +++ ++               ++++   +    I ATT    +   +  R    
Sbjct: 121 APVTGKYKVYIIDEVHMLSNSAFNALLKTLEEPPAHVIFILATTDPQKVPKTIISRCQ-Q 179

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                  ++ +   ++  +   G+ +TDEA   I+  + G  R A  ++ +V  +A
Sbjct: 180 FEFRNIPLQAMIERLKFISHDQGIRITDEALHLISQLAEGGLRNALSIMDQVIAYA 235


>gi|63086953|emb|CAI72282.1| Lon protease, putative [Phytophthora infestans]
          Length = 930

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 68/187 (36%), Gaps = 32/187 (17%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI  +K + +    ++ FVGPPG+GKT++ + +AR L   F   S
Sbjct: 431 EDHYGLKDIKERILEFIAVSKLKGDVQGKIICFVGPPGVGKTSIGKSIARSLNREFYRFS 490

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              ++   ++                           ++ IDEI +L    +        
Sbjct: 491 VGGLSDVAEIKGHRRTYVGAMPGKIIQCLKSTQSSNPLILIDEIDKLGRGYQGDPASALL 550

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P+     +D           V ++LSR   I        +  PL DR  +     +
Sbjct: 551 ELLDPSQNSGFVD-------HYMDVPVDLSRVLFICTANVTDTIPGPLLDRMEVLRLSGY 603

Query: 183 YEIEDLK 189
              E L 
Sbjct: 604 DSPEKLA 610


>gi|15920578|ref|NP_376247.1| hypothetical protein ST0376 [Sulfolobus tokodaii str. 7]
 gi|15621361|dbj|BAB65356.1| 747aa long hypothetical SAV protein [Sulfolobus tokodaii str. 7]
          Length = 747

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 51/245 (20%), Positives = 87/245 (35%), Gaps = 26/245 (10%)

Query: 28  EEFTGQVEACSNLKVFIE--------AAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
            +  G  E    L+  +E          K+       +L  GPPG GKT LA+ VA E G
Sbjct: 454 NDIGGLEEVKQQLREAVEWPLRFSELFNKSGITPPKGILLFGPPGTGKTMLAKAVATESG 513

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAMED 131
            NF +  GP I           +  +          ++F DEI  ++ +         + 
Sbjct: 514 ANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPTIIFFDEIDAIAPMR----GLTTDS 569

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
              + +V +  +     + L++  +IAAT R  +L   L    RF   I +   +     
Sbjct: 570 GVTERIVNQLLAEMDGIVPLNKVVVIAATNRPDILDPALLRPGRFDRLIYVPPPDKRARA 629

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            I++   +   LA  D    E+A     T    G  +  +   A +   + I  +    A
Sbjct: 630 EILKVHTRNVPLA-EDITLDELA---EKTEGYTGADIEALVREATINAMRKIFNDCDKKA 685

Query: 250 LLRLA 254
             +  
Sbjct: 686 KDQCQ 690



 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/152 (25%), Positives = 62/152 (40%), Gaps = 15/152 (9%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLED 105
           E    +L  GPPG GKT LA+ +A E+G +F + +GP I           L  +    + 
Sbjct: 211 EPPKGILLYGPPGNGKTLLARALANEVGASFYTINGPEIMSKFYGESEQRLREIFEEAQK 270

Query: 106 R--DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
               ++FIDEI  ++   EE+     +     L+               +  +I AT R 
Sbjct: 271 NAPAIIFIDEIDSIAPKREEVTGEVEKRVVAQLLT-----LMDGIKGRGKVIVIGATNRP 325

Query: 164 GLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQ 193
             +   L+   RF   I +   + +  K I+Q
Sbjct: 326 DAVDPALRRPGRFDREIEIRPPDTKGRKEILQ 357


>gi|149197778|ref|ZP_01874827.1| DNA polymerase III, gamma and tau subunits [Lentisphaera araneosa
           HTCC2155]
 gi|149138999|gb|EDM27403.1| DNA polymerase III, gamma and tau subunits [Lentisphaera araneosa
           HTCC2155]
          Length = 890

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 54/179 (30%), Gaps = 37/179 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T ++  GQ    S L   I   +         +FVG  G+GKTT A++ A+ L    
Sbjct: 11  RPQTFDDLAGQDHITSTLTNAIRNQRVGHAY----IFVGTRGIGKTTSARIFAKALNCET 66

Query: 83  RS-------------------------TSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                        G       D+  +    +         +  I
Sbjct: 67  PRADLNPCGQCTNCTEITQGSSIDVIEIDGASNNSVDDIRQIREGAQYTPARCPYKIFII 126

Query: 112 DEIHRLSIIVEEILYPAMED--FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           DE+H LS      L   +E+    +  +       R +   LSR   +        +  
Sbjct: 127 DEVHMLSNAAWNALLKTLEEPPPHIKFLFATTEVHRVLPTILSRCQRLELKPIPRNVIA 185


>gi|221233207|ref|YP_002515643.1| DNA polymerase III subunits gamma and tau [Caulobacter crescentus
           NA1000]
 gi|220962379|gb|ACL93735.1| DNA polymerase III subunit gamma/tau [Caulobacter crescentus
           NA1000]
          Length = 623

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 80/232 (34%), Gaps = 21/232 (9%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RPRT E+  GQ      L      A +        +  G  G+GKTT A+++AR L
Sbjct: 75  ARKYRPRTFEDLIGQEAMVRTL----ANAFSTGRIAHAFMLTGVRGVGKTTTARLLARAL 130

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYP-----AMED 131
                +  GP +    +     + +E R  DVL +D   R  +     L        +E 
Sbjct: 131 NYETDTVKGPSVDLTTEGYHCRSIIEGRHMDVLELDAASRTKVDEMRELLDGVRYAPVEA 190

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT +  +   +  R      L  
Sbjct: 191 RYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAKFIFATTEIRKVPVTILSRCQ-RFDLRR 249

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
            E + L     R +   G  +  +A   IA  + G+ R    LL +     E
Sbjct: 250 VEPDVLVKHFDRISAKEGARIEMDALALIARAAEGSVRDGLSLLDQAIVQTE 301


>gi|126323252|ref|XP_001376069.1| PREDICTED: similar to protease, serine, 15, [Monodelphis domestica]
          Length = 973

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 73/192 (38%), Gaps = 33/192 (17%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI  ++ R      +L F GPPG+GKT++A+ +AR L   +   S
Sbjct: 506 EDHYGMEDVKKRILEFIAVSQLRGSTQGKILCFYGPPGVGKTSIARSIARALNREYFRFS 565

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ ++    +        
Sbjct: 566 VGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLILIDEVDKIGRGYQGDPSSALL 625

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V ++LS+   I        +  PL+DR  + I ++ 
Sbjct: 626 ELLDPEQNSNFLD-------HYLDVPVDLSKVLFICTANVTETIPEPLRDRMEM-INVSG 677

Query: 183 YEIEDLKTIVQR 194
           Y  ++   I +R
Sbjct: 678 YVAQEKLAIAER 689


>gi|315638770|ref|ZP_07893943.1| DNA polymerase III, gamma/tau subunit DnaX [Campylobacter
           upsaliensis JV21]
 gi|315481179|gb|EFU71810.1| DNA polymerase III, gamma/tau subunit DnaX [Campylobacter
           upsaliensis JV21]
          Length = 505

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 51/234 (21%), Positives = 91/234 (38%), Gaps = 25/234 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP+T +E  GQ    ++L+  + + +         LF G  G GKT+ A++ +R
Sbjct: 4   ALAIKYRPKTFDELIGQKAVSASLRYALNSKRLAHAY----LFSGLRGSGKTSSARIFSR 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHR-----LSIIVEEILY-PA 128
            L  +     GP     G     +  LE +  D++ +D         +  ++E+  Y P+
Sbjct: 60  ALVCD----EGPNATPCGTCKQCIAALEGKHIDIIEMDAASNRGLEDIQNLIEQTKYAPS 115

Query: 129 MEDFQLDLMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           M  F++ ++               ++++   S    I ATT    L   +  R       
Sbjct: 116 MARFKIFIIDEVHMLTPQAANALLKTLEEPPSYVKFILATTDPLKLPATVLSRTQHFRFK 175

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
              + E L T ++      G+   +EA   IA    G+ R    LL +   F+E
Sbjct: 176 QIAQSEIL-THLKDILNKEGVKFEEEALKFIARSGSGSLRDTLTLLDQAIIFSE 228


>gi|301099514|ref|XP_002898848.1| lon protease, putative [Phytophthora infestans T30-4]
 gi|262104554|gb|EEY62606.1| lon protease, putative [Phytophthora infestans T30-4]
          Length = 807

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 68/187 (36%), Gaps = 32/187 (17%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI  +K + +    ++ FVGPPG+GKT++ + +AR L   F   S
Sbjct: 431 EDHYGLKDIKERILEFIAVSKLKGDVQGKIICFVGPPGVGKTSIGKSIARSLNREFYRFS 490

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              ++   ++                           ++ IDEI +L    +        
Sbjct: 491 VGGLSDVAEIKGHRRTYVGAMPGKIIQCLKSTQSSNPLILIDEIDKLGRGYQGDPASALL 550

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P+     +D           V ++LSR   I        +  PL DR  +     +
Sbjct: 551 ELLDPSQNSGFVD-------HYMDVPVDLSRVLFICTANVTDTIPGPLLDRMEVLRLSGY 603

Query: 183 YEIEDLK 189
              E L 
Sbjct: 604 DSPEKLA 610


>gi|254796847|ref|YP_003081684.1| DNA polymerase III, subunits gamma and tau [Neorickettsia risticii
           str. Illinois]
 gi|254590084|gb|ACT69446.1| DNA polymerase III, subunits gamma and tau [Neorickettsia risticii
           str. Illinois]
          Length = 403

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 82/225 (36%), Gaps = 21/225 (9%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
            +  RPR L E  GQ      L     A+ AR E    VL  GP G GKTT A+ V   L
Sbjct: 14  ANKYRPRLLNEIVGQDFLVKCLS----ASIARDEVAGAVLLSGPYGTGKTTTARAVTLSL 69

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV-----EEILYPAMEDFQ 133
             + R    P + K     ++L      DVL ID      +       E  LY  +    
Sbjct: 70  LCSNRMDVLPCL-KCDSCLSVLNGSHP-DVLEIDAASNTGVEDVRMLIEGALYKPLLSKY 127

Query: 134 LDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
              ++ E             + ++          ATT +  +   +  R     RL+   
Sbjct: 128 KSYIIDEVHMLSQSAFNALLKLLEEPPQHVKFFLATTELQKIPATIISRCQ-HYRLSRLS 186

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
              +   + + A+   + +  +A   IA ++ G+ R A  LL +V
Sbjct: 187 RFVITERLTQVAEREQIEIAQDAIKFIAEKADGSLRDALSLLEQV 231


>gi|257387805|ref|YP_003177578.1| replication factor C large subunit [Halomicrobium mukohataei DSM
           12286]
 gi|257170112|gb|ACV47871.1| AAA ATPase central domain protein [Halomicrobium mukohataei DSM
           12286]
          Length = 497

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 80/224 (35%), Gaps = 30/224 (13%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
                RP TL E  G  +A   L+ + E+ +   EA   V+  G PG+GKT+ A  +A +
Sbjct: 4   WTERYRPTTLAEVRGNDKARDALREWAESWEDHREA---VILHGAPGIGKTSAAHALAND 60

Query: 78  LGVNFRSTSGP------VIAKAGDLAA----LLTNLEDRDVLFIDEIHRLSIIVEEILYP 127
           +       +        VI K    AA    L      R ++ +DE   +          
Sbjct: 61  MEWPTIELNASDSRTKDVIEKVAGEAAKSGTLTAGGAGRRLVVMDEADNIHGN------- 113

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
             +      +      A    I ++             ++N L++        +      
Sbjct: 114 -ADRGGARAITSLVKEANQPMILIA--------NEFYEMSNGLRNACDDIEFRDV-GKRS 163

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
           +  +++   +   +A  DEA  EIA  + G  R A + L+ + +
Sbjct: 164 IVPVLRDVLRQEEIAFDDEALTEIAEMNDGDLRGAIKDLQALAE 207


>gi|209519558|ref|ZP_03268351.1| DNA polymerase III, subunits gamma and tau [Burkholderia sp. H160]
 gi|209500037|gb|EEA00100.1| DNA polymerase III, subunits gamma and tau [Burkholderia sp. H160]
          Length = 375

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 47/253 (18%), Positives = 92/253 (36%), Gaps = 28/253 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+      GQ      L   ++  +     L H  LF G  G+GKTTL+++ A+ L   
Sbjct: 11  RPKDFASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAMEDFQL 134
              TS P     G   A     E R V +++        +  ++ ++E  +Y  ++    
Sbjct: 66  TGVTSTP----CGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             M+ E             ++++        I ATT    +   +  R  +   L     
Sbjct: 122 VYMIDEVHMLTNHAFNAMLKTLEEPPQHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPA 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
             + T ++R      +    +A   +A  + G+ R A  L  +   ++    ++   R  
Sbjct: 181 GHIVTHLERILGEENVPHEAQALRLLARAADGSMRDALSLTDQAIAYSANQVSEEAVR-G 239

Query: 246 ADAALLRLAIDKM 258
              AL +  + ++
Sbjct: 240 MLGALDQSYLIRL 252


>gi|332526140|ref|ZP_08402278.1| DNA polymerase III subunits gamma and tau [Rubrivivax
           benzoatilyticus JA2]
 gi|332109983|gb|EGJ10611.1| DNA polymerase III subunits gamma and tau [Rubrivivax
           benzoatilyticus JA2]
          Length = 378

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 48/321 (14%), Positives = 95/321 (29%), Gaps = 75/321 (23%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARE 77
               RPR+ ++  GQ      L   +E      + L H  LF G  G+GKTT+++++A+ 
Sbjct: 7   ARKYRPRSFDQMVGQEHVVRALSNALE-----QQRLHHAYLFTGTRGIGKTTVSRILAKS 61

Query: 78  LGV-----------------------------NFRSTSGPVIAKAGDLAALLTNL----- 103
           L                               ++            ++  L+        
Sbjct: 62  LNCTGPDGTGGITAHPCGVCSACTEIDADRYIDYIELDAASNRSIDEIRDLIERAAYKPG 121

Query: 104 -EDRDVLFIDEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAAT 160
                V  IDE H+L+      L   +E+    L  ++      + +   LSR       
Sbjct: 122 IGRFKVFMIDEAHQLTKDAFNALLKTLEEPPEYLKFVLATTDPEKMLPTVLSRCLQFNLR 181

Query: 161 TRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPR 220
                                    + +   +Q+      +   + +   ++  +RG+ R
Sbjct: 182 PMA---------------------PQTVHEHLQKVLAAEHVPHDEPSLRLLSRAARGSMR 220

Query: 221 IAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV 280
            A  L     D A       +   +  A L  +            R +  +A   G   +
Sbjct: 221 DALSL----TDQAIAYGGGRVDEAVVRAMLGSVDRGHA------RRLVEALAARDGAAVL 270

Query: 281 G-IETISAGLSEPRDAIEDLI 300
             ++ + A        +E+L 
Sbjct: 271 ATVDALRAMGLSASATLEELA 291


>gi|226197211|ref|ZP_03792788.1| DNA polymerase III, subunits gamma and tau [Burkholderia
           pseudomallei Pakistan 9]
 gi|225930590|gb|EEH26600.1| DNA polymerase III, subunits gamma and tau [Burkholderia
           pseudomallei Pakistan 9]
          Length = 531

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 85/229 (37%), Gaps = 27/229 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+      GQ      L   ++  +     L H  LF G  G+GKTTL+++ A+ L   
Sbjct: 11  RPKDFASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAMEDFQL 134
              TS P     G   A     E R V +++        +  ++ ++E  +Y  ++    
Sbjct: 66  TGVTSQP----CGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             M+ E             ++++        I ATT    +   +  R  +   L     
Sbjct: 122 VYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPA 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
             + + ++R      +A   +A   +A  ++G+ R A  L  +   ++ 
Sbjct: 181 GHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSA 229


>gi|311977891|ref|YP_003987011.1| putative replication factor C small subunit [Acanthamoeba polyphaga
           mimivirus]
 gi|81999791|sp|Q5UP47|RFCS3_MIMIV RecName: Full=Putative replication factor C small subunit L499;
           Short=RFC small subunit L499; AltName: Full=Clamp loader
           small subunit L499
 gi|55417114|gb|AAV50764.1| putative replication factor C [Acanthamoeba polyphaga mimivirus]
 gi|308204440|gb|ADO18241.1| putative replication factor C small subunit [Acanthamoeba polyphaga
           mimivirus]
          Length = 344

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 86/249 (34%), Gaps = 44/249 (17%)

Query: 1   MMDREGLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           M   E + SR   ++    +   RP+ ++      +   +LK FIE+       L H+LF
Sbjct: 1   MSYYETIASRTEPKKQLPWVEKYRPQEIDHIISNRDIILSLKKFIES-----RTLPHLLF 55

Query: 60  VGPPGLGKTTLAQVVARE-----LGVNFRSTSGPVIAKAGDLAALLTN-----------L 103
            GP G GKT+  +  ARE     +       +         +   + N           +
Sbjct: 56  FGPSGSGKTSTIKCCAREIYGKYINYMILELNASNERGIETVRTKIKNFVSSKSSIFLPM 115

Query: 104 EDRDVL---FIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAAT 160
             RD+     +DEI  +++  + +L   +E                     +RF      
Sbjct: 116 GVRDIFKLVILDEIDSMTVEAQGMLRQTIEKNSGT----------------TRF--CLIC 157

Query: 161 TRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPR 220
             +  +   LQ R          E++ +   +    +L G+    EA   I   S+G  R
Sbjct: 158 NDIDKINIALQSRCASFRFSPLNELD-MHGRLSDICRLEGVKYEKEAINSIIKISKGDMR 216

Query: 221 IAGRLLRRV 229
            A   L+ V
Sbjct: 217 SAINTLQHV 225


>gi|15835228|ref|NP_296987.1| DNA polymerase III subunits gamma and tau [Chlamydia muridarum
           Nigg]
 gi|270285399|ref|ZP_06194793.1| DNA polymerase III subunits gamma and tau [Chlamydia muridarum
           Nigg]
 gi|270289413|ref|ZP_06195715.1| DNA polymerase III subunits gamma and tau [Chlamydia muridarum
           Weiss]
 gi|301336796|ref|ZP_07224998.1| DNA polymerase III subunits gamma and tau [Chlamydia muridarum
           MopnTet14]
 gi|7190650|gb|AAF39442.1| DNA polymerase III, gamma subunit [Chlamydia muridarum Nigg]
          Length = 465

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 54/250 (21%), Positives = 91/250 (36%), Gaps = 24/250 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP T  E  GQ    S LK  +   ++        +F G  G GKTTLA+V A+ L    
Sbjct: 12  RPNTFSEILGQDMVVSILKNSLRLNRSAHAY----IFSGIRGTGKTTLARVFAKALNCQS 67

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHR-----LSIIVEEILYPAMEDFQLDLM 137
            + +     +      +       DV+ ID         +  I E +L+   +      +
Sbjct: 68  PTENQEPCNQCAICKEISLGTSM-DVMEIDGASHRGIEDIRQINETVLFVPSKSRYKIYI 126

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++   +      ATT +  + N +  R    +     E E +
Sbjct: 127 IDEVHMLTKEAFNSLLKTLEEPPAHVKFFLATTEIAKIPNTISSRCQKMLLKRIPE-ETI 185

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              +   AKL  +  + EA   IA  ++G+ R A  L   V         ++ T E    
Sbjct: 186 IDKLTTIAKLGKIEASREALLPIAKAAQGSLRDAESLYDYVVGLFP----ESFTPEDTAK 241

Query: 249 ALLRLAIDKM 258
           AL  L+ D +
Sbjct: 242 ALGILSDDTL 251


>gi|18397363|ref|NP_566258.1| LON3 (LON PROTEASE 3); ATP binding / ATP-dependent peptidase/
           nucleoside-triphosphatase/ nucleotide binding /
           serine-type endopeptidase/ serine-type peptidase
           [Arabidopsis thaliana]
 gi|75336107|sp|Q9M9L8|LONM3_ARATH RecName: Full=Lon protease homolog 3, mitochondrial; Flags:
           Precursor
 gi|6714391|gb|AAF26080.1|AC012393_6 putative mitochondrial LON ATP-dependent protease [Arabidopsis
           thaliana]
 gi|332640775|gb|AEE74296.1| lon protease 3 [Arabidopsis thaliana]
          Length = 924

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 60/331 (18%), Positives = 112/331 (33%), Gaps = 44/331 (13%)

Query: 11  NVSQEDADISLLRPRTL--EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGK 67
           N S E+ D+  LR + +  E+  G  +    +  FI   + R  +   ++   GPPG+GK
Sbjct: 396 NFSYENFDV--LRAKKILDEDHYGLSDVKERILEFIAVGRLRGTSQGKIICLSGPPGVGK 453

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED----------------RDVLFI 111
           T++ + +AR L   F   S   ++   ++                           ++  
Sbjct: 454 TSIGRSIARALDRKFFRFSVGGLSDVAEIKGHCQTYVGAMPGKMVQCLKSVGTANPLILF 513

Query: 112 DEIHRLSI--------IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
           DEI +L           + E++ P      LD          +V I+LS+   +     +
Sbjct: 514 DEIDKLGRCHTGDPASALLEVMDPEQNAKFLD-------HFLNVTIDLSKVLFVCTANVI 566

Query: 164 GLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAG 223
            ++  PL DR  +     +   E +       A+   +  T             +     
Sbjct: 567 EMIPGPLLDRMEVIDLSGYVTDEKMH-----IARDYLVKKTCRDCGIKPEHVDLSDAALL 621

Query: 224 RLLRRVRDFAEVAH-AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGI 282
            L+      A V +  K I +     AL  +    + FD  D +    +A+      V  
Sbjct: 622 SLIENYCREAGVRNLQKQIEKIYRKVALELVRQGAVSFDVTDTKDTKSLAKTDS--EVKR 679

Query: 283 ETISAGLSEPRDAIEDLIEPYMIQQGFIQRT 313
             ++  +     A  D  E    Q G + +T
Sbjct: 680 MKVADIMKILESATGDSTESKTKQSGLVAKT 710


>gi|239916820|ref|YP_002956378.1| DNA polymerase III, subunit gamma/tau [Micrococcus luteus NCTC
           2665]
 gi|239838027|gb|ACS29824.1| DNA polymerase III, subunit gamma/tau [Micrococcus luteus NCTC
           2665]
          Length = 1159

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 76/234 (32%), Gaps = 23/234 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP   E+  GQ      L+  +  AK R       LF GP G GKTT A+++AR
Sbjct: 4   ALYRRYRPDRFEDVIGQDHVTVPLRTAL--AKDRVN--HAYLFSGPRGCGKTTSARILAR 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEIL-----YPAM 129
              +N      P      D    L        DVL ID      +     L     +  +
Sbjct: 60  --CLNCAQGPTPTPCGECDSCRDLATGGPGSLDVLEIDAASHGGVEDARGLRERATFAPV 117

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            D    L++ E             + V+        I ATT    +   ++ R       
Sbjct: 118 RDRYKILIIDEAHMVTAAGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSR-THHYPF 176

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
                E L   +++      ++V       +     G+ R    +L ++   A+
Sbjct: 177 RLVPPEPLIAYLEQLCAEEAVSVEKGVLPLVVRAGTGSVRDTLSVLDQLIAGAQ 230


>gi|303390791|ref|XP_003073626.1| replication factor C [Encephalitozoon intestinalis ATCC 50506]
 gi|303302773|gb|ADM12266.1| replication factor C [Encephalitozoon intestinalis ATCC 50506]
          Length = 309

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 83/234 (35%), Gaps = 34/234 (14%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           D  ++  RP  +++  G       + + I++     + + H+LF GPPG GKTT A+++A
Sbjct: 2   DLLVNKYRPNEVQDVIGNQMTVELVSLIIDS-----KDMPHLLFAGPPGTGKTTCAKILA 56

Query: 76  RE---LGVNFRSTSGPVIAKAGDLAALLTNLEDR-------DVLFIDEIHRLSIIVEEIL 125
           R+           +         +   + +   R        V+ +DE   ++   ++ +
Sbjct: 57  RKLLPSKEGLLELNASDERGIETVRTTIKSFAQRRIKDCSFKVIILDEADSMTTAAQQAM 116

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
              ME                     S    I     +  +  P+Q R  I       E 
Sbjct: 117 RRVMEVHS------------------SECRFILICNTLTKIFEPIQSRCAILRFDRI-EN 157

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
             +   ++  +K  G+ ++ EA   I   S G  R +  +L+     +E     
Sbjct: 158 SMILERLREISKDEGIKISKEALDLIVELSDGDMRQSLNILQACISSSETIDQG 211


>gi|73669571|ref|YP_305586.1| replication factor C large subunit [Methanosarcina barkeri str.
           Fusaro]
 gi|110287808|sp|Q46AT6|RFCL_METBF RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|72396733|gb|AAZ71006.1| replication factor C large subunit [Methanosarcina barkeri str.
           Fusaro]
          Length = 642

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 7/108 (6%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
                RP+TL+E  G  +A   L+ + E   +       V+  GP G+GKT+ A  +AR+
Sbjct: 7   WAEKYRPQTLKEIVGNKKAVQYLRTWAEKWLSGIPDRRAVVLHGPAGVGKTSTAHALARD 66

Query: 78  LGVNFR------STSGPVIAK-AGDLAALLTNLEDRDVLFIDEIHRLS 118
           L             +  VI + AG  A++ T    + ++ +DE   + 
Sbjct: 67  LDWEVIELNASDQRTAGVIERVAGSAASMNTFFGGKRLIILDEADNIH 114


>gi|227876482|ref|ZP_03994594.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35243]
 gi|227843023|gb|EEJ53220.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35243]
          Length = 725

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 74/229 (32%), Gaps = 23/229 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T  E  GQ      L    EA+ A        LF GP G GKTT A+++AR
Sbjct: 4   ALYRRYRPDTFAEVIGQDHVTKAL----EASLANGRINHAYLFSGPRGCGKTTSARIMAR 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILY------PA 128
              +N      P      D    L        DV+ ID      +     L       P 
Sbjct: 60  --CLNCVEGPTPTPCGKCDSCRDLATGGSGSLDVVEIDAASNGGVDDARELRERATFAPV 117

Query: 129 MEDFQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            + F++ ++         G     + V+        I ATT    +   ++ R       
Sbjct: 118 RDRFKIFILDEAHMVTAAGFNALLKLVEEPPEHIKFIFATTDPDKVIGTIRSR-THHYPF 176

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
                E L+  +       G+ V D           G+ R +  +L ++
Sbjct: 177 RLVAPEILRDYLADLCHREGVKVEDGVLGLAVRAGGGSVRDSLSILDQL 225


>gi|194334277|ref|YP_002016137.1| DNA polymerase III subunits gamma and tau [Prosthecochloris
           aestuarii DSM 271]
 gi|194312095|gb|ACF46490.1| DNA polymerase III, subunits gamma and tau [Prosthecochloris
           aestuarii DSM 271]
          Length = 617

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 53/284 (18%), Positives = 89/284 (31%), Gaps = 61/284 (21%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP    + T Q      ++  +   +         +F G  G+GKTT A+V A+ +
Sbjct: 7   ARKYRPSKFADITAQEHITHTIQNALRLDRVGHGY----IFSGLRGVGKTTAARVFAKAV 62

Query: 79  GV--------------------------------NFRSTSGPVIAKAGDLAALLTNLEDR 106
                                             N             D+  L  N+   
Sbjct: 63  NCQKMIDDPVYRQEVTEPCGECESCLDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYG 122

Query: 107 D------VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAAT 160
                  V  IDE+H LS          +E+                    S    I AT
Sbjct: 123 PQKGRYRVYIIDEVHMLSTAAFNAFLKTLEE------------------PPSHAIFIFAT 164

Query: 161 TRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPR 220
           T +  +   +  R           I ++++ +Q   +   L ++D+A   IA +++G+ R
Sbjct: 165 TELHKIPATISSRCQ-RFNFKRIPIGEIQSQLQMICRAETLQISDDALLLIARKAQGSMR 223

Query: 221 IAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLD 264
            A  +L +V  F+    A+ +      A LL    D   FD  D
Sbjct: 224 DAQSILDQVIAFSVGNDAEKVIAYQGVAELLNYIDDDQFFDVSD 267


>gi|187777493|ref|ZP_02993966.1| hypothetical protein CLOSPO_01068 [Clostridium sporogenes ATCC
           15579]
 gi|187774421|gb|EDU38223.1| hypothetical protein CLOSPO_01068 [Clostridium sporogenes ATCC
           15579]
          Length = 601

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 62/267 (23%), Positives = 98/267 (36%), Gaps = 31/267 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH-------VLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  E    L   ++  K+    +D        VL VGPPG GKT LA+ +A E 
Sbjct: 157 TFDDVAGADEEKEELAEIVDFLKSPKRYIDMGARIPKGVLLVGPPGTGKTLLAKAIAGEA 216

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG       V   A  +  L    +     ++FIDEI  +       L    +
Sbjct: 217 GVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNSPCIVFIDEIDAVGRQRGAGLGGGHD 276

Query: 131 DFQLD----LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
           + +      L+  +G  A    I      +IAAT R  +L   L    RF   I +   +
Sbjct: 277 EREQTLNQLLVEMDGFGANEGII------MIAATNRPDILDPALLRPGRFDRQIVVGAPD 330

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           ++  + I++  +K   LA   +           T      L+      A     + I  E
Sbjct: 331 VKGREAILKVHSKNKHLAEEIKLEILAKRTPGFTGADLENLMNESALLAVRKRKELIDME 390

Query: 245 IADAALLRLAIDKMG----FDQLDLRY 267
             + A+ R+           D+ D + 
Sbjct: 391 DLEEAVTRVIAGPEKKSRVIDEEDRKL 417


>gi|18313052|ref|NP_559719.1| moxR related protein [Pyrobaculum aerophilum str. IM2]
 gi|18160556|gb|AAL63901.1| moxR related protein [Pyrobaculum aerophilum str. IM2]
          Length = 301

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 48/171 (28%), Positives = 73/171 (42%), Gaps = 18/171 (10%)

Query: 36  ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD 95
               L++ + A  AR     HVLF  PPGLGKTTLA+++A+ LG+NFR           D
Sbjct: 15  PRETLELLLSAIIARG----HVLFNDPPGLGKTTLAKILAKALGLNFRRIQFTPDMLPSD 70

Query: 96  LAALL--TNLEDR----------DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPS 143
           +  +      E R          ++L  DEI+R     +  L  AME+ Q+  + G    
Sbjct: 71  VIGVNVWRPHEGRFEFIRGPVFTNILLADEINRAPPKTQAALLEAMEERQVT-VDGVTYK 129

Query: 144 ARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
                I L+    +     V  L     DRF I + + +    +   I++R
Sbjct: 130 LEEPFIVLATQNPVEFR-GVYPLPEAELDRFLIQLSVGYPSPGEEAEILRR 179


>gi|324323719|gb|ADY24763.1| DNA polymerase III subunits gamma and tau [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 536

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 61/224 (27%), Gaps = 42/224 (18%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +S   A     RP +  +  GQ    +     I  A    +     L  GP G GKTT+A
Sbjct: 1   MSNYVALYRAYRPNSFNDLVGQDHIKTT----IMNAIKLEKVAHAYLLSGPRGTGKTTVA 56

Query: 72  QVVARELGV-------------------------NFRSTSGPVIAKAGDLAALLTNL--- 103
           +++ + +                           +             ++  +   +   
Sbjct: 57  KIIGKGVNCLAPLSNGEPCQKCANCSDINNNKFADILEFDAASNNGVEEIRQIRDQVHLA 116

Query: 104 ---EDRDVLFIDEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIA 158
                  V  IDE+H LS     +L   +E+    +  ++      +  K  +SR     
Sbjct: 117 PVTGKYKVYIIDEVHMLSNSAFNVLLKTLEEPPAHVIFILATTDPQKVPKTIISRCQQFE 176

Query: 159 ATTRVGLLTNPLQDRFGIPIRLNF--YEIEDLKTIVQRGAKLTG 200
                      + DR              E L  I Q       
Sbjct: 177 FRNIP---LQAMIDRLKFISHDQGIRITDEALHLISQLAEGGLR 217


>gi|307069636|ref|YP_003878113.1| putative DNA polymerase III subunits gamma and tau [Candidatus
           Zinderia insecticola CARI]
 gi|306482896|gb|ADM89767.1| putative DNA polymerase III, subunits gamma and tau [Candidatus
           Zinderia insecticola CARI]
          Length = 362

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 41/236 (17%), Positives = 76/236 (32%), Gaps = 52/236 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN- 81
           RP   +E  GQ    S    F +    + +  ++ LF+G  G+GKT+L++++A+ +    
Sbjct: 7   RPMFFKEILGQKHIIS----FFKNCIKKKKFHNNFLFIGNSGIGKTSLSRILAKSMNCKN 62

Query: 82  -----------------------FRSTSGPVIAKAGDLAALLTN-----LEDRDVLFIDE 113
                                  +   +         +  +        +    +  IDE
Sbjct: 63  LNINEPCNKCKSCISINKDKCIDYLEINAASNRGINKIKNIFKYINYIPINKYKIYMIDE 122

Query: 114 IHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           IH L+    + +   +E+                         I ATT+   +   +  R
Sbjct: 123 IHMLTNYAFDSILKIIEE------------------PPKYVKFIFATTKPKKIPKTILSR 164

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
             I         E  K I  +  K+  +     A   IA  S G+ R A  L  ++
Sbjct: 165 CFIFNLKLIKNKEIFKNI-SKILKIENIKYEKNAIKLIAKNSLGSMRNALNLTEQL 219


>gi|299830367|ref|YP_003734582.1| cell division protein [Kryptoperidinium foliaceum]
 gi|297385069|gb|ADI40367.1| cell division protein [Kryptoperidinium foliaceum]
          Length = 627

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 65/299 (21%), Positives = 105/299 (35%), Gaps = 31/299 (10%)

Query: 23  RPRT---LEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQ 72
           RP T    ++  G  EA +  +  +   K         A+    VL VGPPG GKT LA+
Sbjct: 176 RPDTGISFDDIAGIDEAKAEFEEIVSFLKEPERYTLVGAKIPKGVLLVGPPGTGKTLLAK 235

Query: 73  VVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEI 124
            +A E  V F S +G           A  +  L     +    ++FIDEI  +       
Sbjct: 236 AIANEASVPFYSVAGSEFVEMFIGIGAARIRDLFKKASENTPCIVFIDEIDAVGRERGAG 295

Query: 125 LYPAMEDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRL 180
           +    ++ +  L  ++ E    +  K       ++ AT RV +L   L    RF   I +
Sbjct: 296 IGGGNDEREQTLNQLLTEMDGFKENKG----VIVVGATNRVDILDAALLRPGRFDRQITV 351

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
              +      I++  A+   L+               +      LL      A      T
Sbjct: 352 GLPDRLGRLGILKVHARNKPLSQDVSLVQLANRTPGFSGADLANLLNEAAILATRYKKTT 411

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           I++   + A  R+     G    D +   +IA +  G       I   L E  D +E +
Sbjct: 412 ISKNEVNEAADRIIGGIAGAAMEDTKNKKLIAYHEVGH-----AIVGSLLENHDEVEKV 465


>gi|288924700|ref|ZP_06418637.1| cell division protein FtsH [Prevotella buccae D17]
 gi|288338487|gb|EFC76836.1| cell division protein FtsH [Prevotella buccae D17]
          Length = 690

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 61/263 (23%), Positives = 106/263 (40%), Gaps = 29/263 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ  A   ++  +E  K          +     L VGPPG GKT LA+ VA E 
Sbjct: 191 TFKDVAGQAGAKQEIEEIVEFLKNPKKYTNLGGKIPKGALLVGPPGTGKTLLAKAVAGEA 250

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEIL---YP 127
           GV F S SG       V   A  +  L    +++   ++FIDEI  +     +       
Sbjct: 251 GVPFFSMSGSDFVEMFVGVGASRVRDLFRQAKEKAPCIIFIDEIDAVGRARAKNSMMNGN 310

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           + ++  L+ ++ E     +     S   ++AAT RV +L   L    RF   I ++  ++
Sbjct: 311 SEQENTLNALLTEMDGFGTN----SGVIILAATNRVDMLDAALLRAGRFDRQIHVDLPDL 366

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
            + K I Q    +    V  + + +I + +R TP  +G  +  V + A +  A+     +
Sbjct: 367 NERKEIFQ----VHLKPVKVDDSVDIDLLARQTPGFSGADIANVCNEAALIAARHDRSAV 422

Query: 246 ADAA-LLRLAIDKMGFDQLDLRY 267
                L  +     G ++     
Sbjct: 423 TKQDFLDAVDRIIGGLEKKTKVM 445


>gi|16124522|ref|NP_419086.1| DNA polymerase III subunits gamma and tau [Caulobacter crescentus
           CB15]
 gi|13421402|gb|AAK22254.1| DNA polymerase III, gamma and tau subunits [Caulobacter crescentus
           CB15]
          Length = 608

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 80/232 (34%), Gaps = 21/232 (9%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RPRT E+  GQ      L      A +        +  G  G+GKTT A+++AR L
Sbjct: 60  ARKYRPRTFEDLIGQEAMVRTL----ANAFSTGRIAHAFMLTGVRGVGKTTTARLLARAL 115

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYP-----AMED 131
                +  GP +    +     + +E R  DVL +D   R  +     L        +E 
Sbjct: 116 NYETDTVKGPSVDLTTEGYHCRSIIEGRHMDVLELDAASRTKVDEMRELLDGVRYAPVEA 175

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT +  +   +  R      L  
Sbjct: 176 RYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAKFIFATTEIRKVPVTILSRCQ-RFDLRR 234

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
            E + L     R +   G  +  +A   IA  + G+ R    LL +     E
Sbjct: 235 VEPDVLVKHFDRISAKEGARIEMDALALIARAAEGSVRDGLSLLDQAIVQTE 286


>gi|260591351|ref|ZP_05856809.1| ATP-dependent metalloprotease FtsH [Prevotella veroralis F0319]
 gi|260536717|gb|EEX19334.1| ATP-dependent metalloprotease FtsH [Prevotella veroralis F0319]
          Length = 678

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 66/268 (24%), Positives = 107/268 (39%), Gaps = 39/268 (14%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ  A   ++  +E  K          +     L +GPPG GKT LA+ VA E 
Sbjct: 182 TFKDVAGQTGAKQEVQEIVEFLKNPKKYTDLGGKIPKGALLIGPPGTGKTLLAKAVAGEA 241

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM- 129
           GV F S SG       V   A  +  +    +++   ++FIDEI  +     +   PAM 
Sbjct: 242 GVPFFSMSGSDFVEMFVGVGASRVRDVFHQAKEKSPCIIFIDEIDAVGRARSKN--PAMG 299

Query: 130 ----EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183
                +  L+ ++ E     +     S   ++AAT RV +L   L    RF   I ++  
Sbjct: 300 GNDERENTLNALLTEMDGFGTN----SGVIVLAATNRVDMLDKALLRAGRFDRQIHVDLP 355

Query: 184 EIEDLKTIV---QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           ++ + K I     R  KL      D  A       R TP  +G  +  V + A +  A+ 
Sbjct: 356 DLPERKDIFLVHMRNLKLDKNLDIDLLA-------RQTPGFSGADIANVCNEAALIAARH 408

Query: 241 ITREIADAA-LLRLAIDKMGFDQLDLRY 267
            ++E+A    L  +     G ++     
Sbjct: 409 DSKEVAKQDFLDAVDRIIGGLEKKTKVM 436


>gi|148285033|ref|YP_001249123.1| DNA polymerase III subunits gamma and tau [Orientia tsutsugamushi
           str. Boryong]
 gi|146740472|emb|CAM81007.1| DNA polymerase III gamma and tau chains [Orientia tsutsugamushi
           str. Boryong]
          Length = 559

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 52/252 (20%), Positives = 91/252 (36%), Gaps = 32/252 (12%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLK-VFIEAAKARAEALDHVLF 59
           M++R+       S         RP+T+ E  GQ      L    I    ++A      L 
Sbjct: 1   MLERQ-------SNYVVWARKYRPKTMCELIGQEVLTKVLTYSMITGCLSQA-----YLL 48

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVI---AKAGDLAALLTNLEDRDVLFIDEIHR 116
            G  G+GKTT A+++A  +       +   I    K     A+  N    D+  ID   R
Sbjct: 49  SGIRGVGKTTAARIIATTINCLQPVVTSKTIFACTKCNSCIAMENNSHP-DINEIDAASR 107

Query: 117 L-----SIIVEEILYPAMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTR 162
                   I+++  Y  +       ++ E             + ++   S    I ATT 
Sbjct: 108 TGVDDVRTIIDDSEYKPLISKYKIFIIDEVHMLSKSAFNALLKLLEEPPSHTIFIFATTE 167

Query: 163 VGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
           +  +   +  R      L   +I ++  I+        ++ T E    IA+++ G+ R A
Sbjct: 168 INKIPLTVISRCQ-KFDLRRLDINNIVQILSNIIAKENVSATKEILEFIAVKADGSARDA 226

Query: 223 GRLLRRVRDFAE 234
             LL + R  A+
Sbjct: 227 VSLLEQARALAQ 238


>gi|159115639|ref|XP_001708042.1| Replication factor C, sub 2 [Giardia lamblia ATCC 50803]
 gi|157436151|gb|EDO80368.1| Replication factor C, sub 2 [Giardia lamblia ATCC 50803]
          Length = 351

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 47/235 (20%), Positives = 77/235 (32%), Gaps = 36/235 (15%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE----- 77
           RP  L+    Q  A    K  IE+       + H+L  GP G GKTTL   +  E     
Sbjct: 10  RPLLLDRIMHQDHAVRAAKRCIESG-----NMPHMLLYGPAGTGKTTLIHAMMHEFFGPR 64

Query: 78  -LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
                    +         +   + ++    +        ++    + +YP   DFQ+ +
Sbjct: 65  FWRARVSEFNASTDRGIKIVRERIKSIARTVIA-------VAPDDVKAVYP-CPDFQVII 116

Query: 137 MVGEGPSARSVKINLSRFTLIAATT--------RVGLLTNPLQD---RFGIPIRLNFYEI 185
           +       R  +  L R     + T            +  P+     RF          I
Sbjct: 117 LDEADALTRESQAALRRIIEDFSETTRFCIICNYPSQIIAPIVSRCARFAFSSLPRPLII 176

Query: 186 EDLKTIV------QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
           + L++I        R A     +   EA  E+A  S+G  R A  LL+    F +
Sbjct: 177 DRLESICYAEMHQLRNANEKLSSSASEALGEVATLSQGDMRAAITLLQATVQFCQ 231


>gi|241060074|ref|XP_002407985.1| ATP-dependent protease PIM1/LON, putative [Ixodes scapularis]
 gi|215492328|gb|EEC01969.1| ATP-dependent protease PIM1/LON, putative [Ixodes scapularis]
          Length = 857

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 44/247 (17%), Positives = 87/247 (35%), Gaps = 37/247 (14%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI  ++ +      +L F GPPG+GKT++A+ +AR L   +   S
Sbjct: 396 EDHYGMDDVKKRILEFIAVSQLKGTTQGKMLCFYGPPGVGKTSIARSIARALNREYFRFS 455

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ ++    +        
Sbjct: 456 VGGMTDVAEIKGHRRTYVGAMPGKLIQCLKKTKTENPLVLIDEVDKIGRGYQGDPSSALL 515

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V ++LS+   I        +  PL+DR  + I ++ 
Sbjct: 516 EVLDPEQNANFLD-------HYLDVNVDLSKVLFICTANVTDTIPEPLKDRLEM-IEVSG 567

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  E+   I +R      +      +     +    P     L++     + V + +   
Sbjct: 568 YVAEEKMAIAER----YLIPQARNTSGVAESQLVIQPESLQHLIKYYCRESGVRNLQKHI 623

Query: 243 REIADAA 249
            +I   A
Sbjct: 624 EKILRKA 630


>gi|194218937|ref|XP_001504577.2| PREDICTED: similar to Replication factor C subunit 2 (Replication
           factor C 40 kDa subunit) (RF-C 40 kDa subunit) (RFC40)
           (Activator 1 40 kDa subunit) (A1 40 kDa subunit) [Equus
           caballus]
          Length = 368

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 77/228 (33%), Gaps = 40/228 (17%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVF-IEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           E   +   RP  L E  G  +  S L+V  IE        + +++  GPPG GKTT    
Sbjct: 49  ELPWVEKYRPVKLNEIVGNEDTVSRLEVIGIEG------NVPNIIIAGPPGTGKTTSILC 102

Query: 74  VAR------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIHRLSI 119
           +AR            EL  +       V  K    A     L      ++ +DE   ++ 
Sbjct: 103 LARALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTD 162

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
             ++ L   ME +                   +RF    A      +  P+Q R  +   
Sbjct: 163 GAQQALRRTMEIYSKT----------------TRF--ALACNASDKIIEPIQSRCAVLRY 204

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
               + + L  ++    +   +  TD+    I   ++G  R A   L+
Sbjct: 205 TKLTDAQVLARLMT-IIEKENVPYTDDGLEAIVFTAQGDMRQALNNLQ 251


>gi|197294216|ref|YP_001798757.1| Putative IMP dehydrogenase/GMP reductase [Candidatus Phytoplasma
           australiense]
 gi|171853543|emb|CAM11403.1| Putative IMP dehydrogenase/GMP reductase [Candidatus Phytoplasma
           australiense]
          Length = 688

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 94/249 (37%), Gaps = 22/249 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDHV--------LFVGPPGLGKTTLAQVVARE 77
           T ++  G       L+  I   K     L +         L  GPPG GKT L + ++ E
Sbjct: 254 TFKDVYGMESEKEELEDLIFYFKESNNNLVNFDKIRPKGYLLYGPPGTGKTFLLKSLSNE 313

Query: 78  LGVNF------RSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAM 129
               F      +     V    G+   +    E  D+ ++FIDEI  ++   ++      
Sbjct: 314 CNAYFIEFEPSKLDKTYVGEGVGEWEKIWMEAERHDKTIIFIDEISGMANREDKNSNKTS 373

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
            +   +++       RS K    +  L+ AT  +  +   L+ RF   I+++  + E+++
Sbjct: 374 INIVNNILTKLDGFNRSDK----KIVLMGATNHLDQIDKALRSRFSKEIKIDLIKDEEIE 429

Query: 190 TIVQRGAKLTGLAVTDE-AACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             ++   +   ++        EIA R +G    + R L  + + A     K  T      
Sbjct: 430 GFLKFLIEPYQISYHTYLHLKEIANRCKGK-NYSNRDLTTIINDAYNKTNKFKTLNPNHE 488

Query: 249 ALLRLAIDK 257
            +L   +D+
Sbjct: 489 VMLPSDLDE 497


>gi|187918641|ref|YP_001884207.1| cell division protein FtsH [Borrelia hermsii DAH]
 gi|119861489|gb|AAX17284.1| cell division protein FtsH [Borrelia hermsii DAH]
          Length = 635

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 64/253 (25%), Positives = 100/253 (39%), Gaps = 35/253 (13%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAK-------ARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ EA   L   +E  K         A     VL VG PG GKT LA+ VA E 
Sbjct: 171 TFKDVAGQEEAKQELSEIVEFLKYPKKFEKIGARIPKGVLLVGSPGTGKTLLAKAVAGEA 230

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GVNF   SG       V   A  +  L  N       ++FIDE+  +       L    +
Sbjct: 231 GVNFFHMSGSDFVEMFVGVGASRVRDLFDNARKNVPCIIFIDELDAVGRSRGAGLGGGHD 290

Query: 131 DFQLDL------MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNF 182
           + +  L      M G G     +        ++AAT R  +L + L    RF   + +  
Sbjct: 291 EREQTLNQLLVEMDGFGTYTNVI--------VMAATNRPDVLDSALLRPGRFDRQVTVTL 342

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            +I++ + I+   A+ T L+       ++ + +R TP ++G  L  + +   +  A+   
Sbjct: 343 PDIKEREAILNIHAQKTKLSKE----IDLRVIARATPGVSGADLANLINEGALIAARNDQ 398

Query: 243 REIADAALLRLAI 255
            EI    L     
Sbjct: 399 SEILMHDLEEARD 411


>gi|262276244|ref|ZP_06054053.1| DNA polymerase III subunits gamma and tau [Grimontia hollisae CIP
           101886]
 gi|262220052|gb|EEY71368.1| DNA polymerase III subunits gamma and tau [Grimontia hollisae CIP
           101886]
          Length = 708

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 55/284 (19%), Positives = 86/284 (30%), Gaps = 65/284 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP    +  GQ    + L   ++        L H  LF G  G+GKTT+A++ A+ L   
Sbjct: 11  RPHQFRDVVGQSHVLTALANALD-----HNRLHHAYLFSGTRGVGKTTIARIFAKGLNCE 65

Query: 82  FRSTS------------------------GPVIAKAGDLAALLTNLEDRD------VLFI 111
              TS                             K  D   LL N++ +       V  I
Sbjct: 66  QGITSTPCGVCATCQEIEQGRFVDLLEIDAASRTKVEDTRDLLDNVQYKPARGRYKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSRHSFNALLKTLEE------------------PPEYVKFLLATTDPQKLPVTIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L   ++  +K  +    +   +     A   IA  + G+ R A  L     D
Sbjct: 168 SRC-LQFHLKHLDVTQIKDQLSHVLEQESVPAETRALSMIARAAEGSMRDALSL----TD 222

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNF 275
            A       +        L  L+ D+       +  L  +A   
Sbjct: 223 QAIALGNGVVQERQVTEMLGTLSTDQA------ILLLEALAEGH 260


>gi|257454969|ref|ZP_05620217.1| DNA polymerase III subunit tau [Enhydrobacter aerosaccus SK60]
 gi|257447679|gb|EEV22674.1| DNA polymerase III subunit tau [Enhydrobacter aerosaccus SK60]
          Length = 697

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 54/268 (20%), Positives = 83/268 (30%), Gaps = 59/268 (22%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARE 77
               RP+   E  GQ       K  I A     + L H  LF G  G+GKTT+A+++A+ 
Sbjct: 6   ARKYRPKNFHELLGQEHVS---KALINAI--HNQRLHHAYLFTGTRGVGKTTIARILAKC 60

Query: 78  LGVNFRSTS------------------------GPVIAKAGDLAALLTNL------EDRD 107
           L      TS                             K  D   LL N+          
Sbjct: 61  LNCETGVTSEPCGVCGVCQSIDSGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRYK 120

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           V  IDE+H LS      L   +E+                    +    + ATT    L 
Sbjct: 121 VYLIDEVHMLSTHSFNALLKTLEE------------------PPAHVKFLLATTDPQKLP 162

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             +  R  +   L       L   +        ++   +A  +++  ++G+ R A  L  
Sbjct: 163 ITIISRC-LQFVLRPLPQVALAEYLGTILNKEQISYESDALWQLSSSAKGSVRDALSL-- 219

Query: 228 RVRDFAEVAHAKTITREIADAALLRLAI 255
              D A       +T E+    L  +  
Sbjct: 220 --TDQAIAFGNGNVTDEVIRQMLGLIDQ 245


>gi|121708056|ref|XP_001272015.1| intermembrane space AAA protease IAP-1 [Aspergillus clavatus NRRL
           1]
 gi|119400163|gb|EAW10589.1| intermembrane space AAA protease IAP-1 [Aspergillus clavatus NRRL
           1]
          Length = 789

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 59/260 (22%), Positives = 96/260 (36%), Gaps = 27/260 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G  EA   L+  +E  +          +    VL VGPPG GKT LA+ VA E 
Sbjct: 319 RFSDVHGCDEAKEELQELVEFLQNPDRFSSLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 378

Query: 79  GVNFRSTSGPVIA------KAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAME 130
           GV F   SG           A  +  L +    +   ++FIDE+  +     E    A  
Sbjct: 379 GVPFFYMSGSEFDEVYVGVGAKRVRELFSQARGKAPAIIFIDELDAIGAKRNER-DAAYV 437

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
              L+ ++ E           S   +IAAT    LL   L    RF   + +   ++   
Sbjct: 438 KQTLNQLLTELDGFSQT----SGVIIIAATNFPQLLDKALTRPGRFDRKVTVGLPDVRGR 493

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             I++   K   ++       +IA+ +RGTP  +G  L  + + A +  ++    ++   
Sbjct: 494 MDILKHHMKNIQMSTD----VDIAVLARGTPGFSGADLENLVNQAAIYASRHKKTKVGPR 549

Query: 249 ALLRLAI-DKMGFDQLDLRY 267
            L        MG +      
Sbjct: 550 DLDWAKDKIMMGAEARSRVI 569


>gi|227484858|ref|ZP_03915174.1| possible DNA-directed DNA polymerase [Anaerococcus lactolyticus
           ATCC 51172]
 gi|227237218|gb|EEI87233.1| possible DNA-directed DNA polymerase [Anaerococcus lactolyticus
           ATCC 51172]
          Length = 560

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 83/225 (36%), Gaps = 23/225 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+  E+  GQ +  + LK  I+      +   H  LF G  G GKT+ A++ A+ +   
Sbjct: 10  RPKVFEQVLGQDKVINVLKNQIK-----NKNFSHAYLFAGERGCGKTSAAKIFAKAINCL 64

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHR-----LSIIVEEILYPAMEDFQLDL 136
                 P +    +  A+       DV+ +D         +  + + ++YP         
Sbjct: 65  NPKDGSPCLE-CENCRAIEEETS-LDVVEMDAASNRRIDDIRNLRDNVIYPPANLKYKVY 122

Query: 137 MVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ++ E             + ++        I ATT +  +   +  R       N  +   
Sbjct: 123 IIDEAHMITREAFNALLKIMEEPPKHLVFILATTEIDKIPKTILSRVQ-KFEFNKIDSSK 181

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           +K  +    K   + + +EA   I  +++G  R A  +L +V  F
Sbjct: 182 IKEQINIILKDQNVKMENEAIDLIITKAKGAMRDALSILDQVLSF 226


>gi|255282855|ref|ZP_05347410.1| cell division protein FtsH [Bryantella formatexigens DSM 14469]
 gi|255266629|gb|EET59834.1| cell division protein FtsH [Bryantella formatexigens DSM 14469]
          Length = 641

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 57/280 (20%), Positives = 102/280 (36%), Gaps = 25/280 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  GQ EA  +L+  ++  K         A+     L VGPPG GKT LA+ VA E 
Sbjct: 201 TFRDVAGQDEAKESLEEMVDYLKNPEKYRAIGAQQPKGALLVGPPGTGKTLLAKAVAGEA 260

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F   +G           A  +  L    +     ++FIDEI  +    +  L    E
Sbjct: 261 GVPFYHLTGSEFVEMFVGVGASRVRDLFQTAKKNTPCIIFIDEIDAIGKKRDNQLGSNDE 320

Query: 131 -DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            +  L+ ++ E     +         ++AAT R  +L   L    RF   I +   ++  
Sbjct: 321 REQTLNQLLAEMDGFETNGG----IIVLAATNRPEILDQALLRPGRFDRRIIVEKPDLPG 376

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            ++I++   K   L+   +        S  +      ++      A       + +E   
Sbjct: 377 RESILRVHGKKVSLSSDVDFHAIALATSGASGADLANIVNEAALRAVRIGRNVVVQEDLM 436

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISA 287
            ++  +     G ++ D    +   +      VG   ++A
Sbjct: 437 ESVETVIA---GKEKKDRVLNSKERQMVAYHEVGHALVAA 473


>gi|149189267|ref|ZP_01867553.1| DNA polymerase III subunits gamma and tau [Vibrio shilonii AK1]
 gi|148836826|gb|EDL53777.1| DNA polymerase III subunits gamma and tau [Vibrio shilonii AK1]
          Length = 727

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 50/258 (19%), Positives = 80/258 (31%), Gaps = 57/258 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPR   E  GQ    + L    E A  +       LF G  G+GKT++ ++ A+ L    
Sbjct: 11  RPRKFSEVVGQTHVLTAL----ENALDQNRLHHAYLFSGTRGVGKTSIGRLFAKGLNCET 66

Query: 83  RSTS------------------------GPVIAKAGDLAALLTNLEDRD------VLFID 112
             TS                             K  D   LL N++ +       V  ID
Sbjct: 67  GITSTPCGTCSTCIEIDEGRSVDLLEIDAASRTKVEDTRELLDNVQYKPARNRFKVYLID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS      L   +E+                         + ATT    L   +  
Sbjct: 127 EVHMLSRHSFNALLKTLEE------------------PPEYVKFLLATTDPQKLPMTILS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R  +   L    +E+++  +    +   +     A   +A  + G+ R A  L     D 
Sbjct: 169 RC-LQFHLKPITVENIQQQLDHILEKEQVQSESRALALLAHAADGSMRDALSL----TDQ 223

Query: 233 AEVAHAKTITREIADAAL 250
           A       ++  +    L
Sbjct: 224 AIALGNGNVSTPVVSQML 241


>gi|1293572|gb|AAB61695.1| DNA polymerase III tau homolog DnaX [Caulobacter crescentus CB15]
          Length = 608

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 80/232 (34%), Gaps = 21/232 (9%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RPRT E+  GQ      L      A +        +  G  G+GKTT A+++AR L
Sbjct: 60  ARKYRPRTFEDLIGQEAMVRTL----ANAFSTGRIAHAFMLTGVRGVGKTTTARLLARAL 115

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYP-----AMED 131
                +  GP +    +     + +E R  DVL +D   R  +     L        +E 
Sbjct: 116 NYETDTVKGPSVDLTTEGYHCRSIIEGRHMDVLELDAASRTKVDEMRELLDGVRYAPVEA 175

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT +  +   +  R      L  
Sbjct: 176 RYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAKFIFATTEIRKVPVTILSRCQ-RFDLRR 234

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
            E + L     R +   G  +  +A   IA  + G+ R    LL +     E
Sbjct: 235 VEPDVLVKHFDRISAKEGARIEMDALALIARAAEGSVRDGLSLLDQAIVQTE 286


>gi|311248444|ref|XP_003123131.1| PREDICTED: lon protease homolog, mitochondrial-like [Sus scrofa]
          Length = 960

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 73/192 (38%), Gaps = 33/192 (17%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI  ++ R      +L F GPPG+GKT++A+ +AR L   +   S
Sbjct: 489 EDHYGMEDVKKRILEFIAVSQLRGSTQGKILCFYGPPGVGKTSIARSIARALNREYFRFS 548

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ ++    +        
Sbjct: 549 VGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLVLIDEVDKIGRGYQGDPSSALL 608

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V ++LS+   I        +  PL+DR  + I ++ 
Sbjct: 609 ELLDPEQNANFLD-------HYLDVPVDLSKVLFICTANITETIPEPLRDRMEM-INVSG 660

Query: 183 YEIEDLKTIVQR 194
           Y  ++   I +R
Sbjct: 661 YVAQEKLAIAER 672


>gi|195158938|ref|XP_002020340.1| GL13934 [Drosophila persimilis]
 gi|194117109|gb|EDW39152.1| GL13934 [Drosophila persimilis]
          Length = 961

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 41/242 (16%), Positives = 79/242 (32%), Gaps = 37/242 (15%)

Query: 32  GQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           G  +    +  FI  +         +L F GPPG+GKT++A+ +AR L   +   S   +
Sbjct: 463 GMEDIKKRILEFIAVSALNGTTQGKILCFHGPPGVGKTSIAKSIARALNREYFRFSVGGM 522

Query: 91  AKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE--------EILY 126
               ++                        +  ++ IDE+ ++    +        E+L 
Sbjct: 523 TDVAEIKGHRRTYVGAMPGKLIQCLKKTKTENPLVLIDEVDKIGKGYQGDPSSALLELLD 582

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           P      LD           V I+LSR   I     +  +  PL+DR  +     +   E
Sbjct: 583 PEQNANFLD-------HYLDVPIDLSRVLFICTANVIDTIPEPLRDRMELIQMSGYVAEE 635

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
            +       A+   +  +             T +    L+R     + V + +    ++ 
Sbjct: 636 KVA-----IARQYLIPKSMNDCGLTDEHISITEKALNMLIRNYCRESGVRNLQKQIEKVM 690

Query: 247 DA 248
             
Sbjct: 691 RK 692


>gi|71413122|ref|XP_808715.1| replication factor C, subunit 3 [Trypanosoma cruzi strain CL
           Brener]
 gi|70872975|gb|EAN86864.1| replication factor C, subunit 3, putative [Trypanosoma cruzi]
          Length = 355

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 77/237 (32%), Gaps = 21/237 (8%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP TL+E     +  S  +  +++       L H+LF GPPG GKTT  +  A 
Sbjct: 19  PWVEKYRPVTLDEVVAHEDILSTTRRLMDSG-----NLPHLLFYGPPGTGKTTTIKACAY 73

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY--PAMEDFQL 134
            L    R  +  +   A D   +    +      + E    S          P +  F+L
Sbjct: 74  YLFGKDRIRANVLEMNASDDRGIDVVRQQ-----VREFSSTSSFYFASAPAAPTIAAFKL 128

Query: 135 DLMVGEGPSA--------RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++      +        R ++              +  +   LQ R     R    +  
Sbjct: 129 VILDEADQMSGDAQAALRRIIEKYTKNVRFCILCNHINKIIPALQSRC-TRFRFAPVKKS 187

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            +   ++  A+  G+  TDE        S G  R     ++     A     +++ R
Sbjct: 188 AMLPRLKFVAQEEGVRFTDEGLVAAFRLSNGDLRRCLNTMQASAMSAGEITEESVYR 244


>gi|302764360|ref|XP_002965601.1| hypothetical protein SELMODRAFT_167789 [Selaginella moellendorffii]
 gi|300166415|gb|EFJ33021.1| hypothetical protein SELMODRAFT_167789 [Selaginella moellendorffii]
          Length = 858

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 49/190 (25%), Positives = 73/190 (38%), Gaps = 24/190 (12%)

Query: 24  PRTLEEFTGQVEACSNLKVFIE-------AAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           P    +  G  EA   L+  +E        A+  A     VL VGPPG GKT LA+ VA 
Sbjct: 365 PIMFADVAGVDEAKEELEEIVEFLRSPERYARLGARPPRGVLLVGPPGTGKTLLAKAVAG 424

Query: 77  ELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPA 128
           E  V F S S            A  +  L    +     ++FIDEI  ++   +  L   
Sbjct: 425 EASVPFISCSASEFVELYVGMGASRVRELFARAKKNAPSIVFIDEIDAVAKGRDGRLRSV 484

Query: 129 MED---FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183
             D     L+ ++ E     S     S   +I AT R  +L   L+   RF   + +   
Sbjct: 485 SNDEREQTLNQLLTELDGFESA----STVIVIGATNRADVLDPALRRPGRFDRIVMVEPP 540

Query: 184 EIEDLKTIVQ 193
           + +  + I+ 
Sbjct: 541 DRQGREEILN 550


>gi|15899170|ref|NP_343775.1| AAA ATPase family protein [Sulfolobus solfataricus P2]
 gi|284173716|ref|ZP_06387685.1| AAA ATPase family protein [Sulfolobus solfataricus 98/2]
 gi|13815723|gb|AAK42565.1| AAA family ATPase [Sulfolobus solfataricus P2]
 gi|261600918|gb|ACX90521.1| Microtubule-severing ATPase [Sulfolobus solfataricus 98/2]
          Length = 607

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 58/244 (23%), Positives = 86/244 (35%), Gaps = 27/244 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIE--------AAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           T ++  G  +A   ++ +IE        A K   +    +L  GPPG GKT + + +A E
Sbjct: 59  TWDDIGGYEDAKKEIREYIELPLKNKDVATKYGLKPPKGMLLFGPPGCGKTMMMRALANE 118

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
             +NF   +   I           L  L  N       +LF DEI  + +  E     ++
Sbjct: 119 SKLNFLYVNISDIMSKWYGESEARLRELFNNARKNAPCILFFDEIDTIGVKRESHTGDSV 178

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
               L LM+ E     S         ++ +T    +L   L    RF   I +     E 
Sbjct: 179 TPRLLSLMLSEIDGLHSEDG----VIVVGSTNVPQMLDKALLRAGRFDKLIYIGPPNKEA 234

Query: 188 LKTIVQ---RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            K I+Q   RG  L      D+ A      S     +A       R  A  A  K   R+
Sbjct: 235 RKQILQIHCRGKPLAEDVDFDKLAEITERYSGAD--LANLCQEAARKVASEAIEKGADRK 292

Query: 245 IADA 248
           I  A
Sbjct: 293 ITMA 296



 Score = 52.8 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 75/219 (34%), Gaps = 19/219 (8%)

Query: 50  RAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNL 103
           R   +  +L  GPPG+GKT +A+ +A+ L V   + SG  I           +  +    
Sbjct: 374 RVPPIRGILLYGPPGVGKTMMAKALAKTLNVKLIALSGAEIMYKGYEGAIAAIKEVFNRA 433

Query: 104 EDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATT 161
            +    ++ +DE+  ++       Y          +V +  +      +L    +I  T 
Sbjct: 434 RENKPAIILLDELDAIASKRSYKSY-----GDSSKIVNQLLTEMDGIRSLKEVVVIGTTN 488

Query: 162 RVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTP 219
           R+  +   L    RF   I +     E+   I+ +          D              
Sbjct: 489 RLKAIDPALLRPGRFDKIIHMPLPNREERLDILMKYIGKEECEKVDCGILADQTEGYSGA 548

Query: 220 RIAG----RLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            +A       ++ ++        +T+TRE    AL ++ 
Sbjct: 549 DLAALAREAKMKVLKSILRGESNRTLTREDLIDALNKIH 587


>gi|146303255|ref|YP_001190571.1| vesicle-fusing ATPase [Metallosphaera sedula DSM 5348]
 gi|145701505|gb|ABP94647.1| Vesicle-fusing ATPase [Metallosphaera sedula DSM 5348]
          Length = 703

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 57/226 (25%), Positives = 86/226 (38%), Gaps = 22/226 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIE--------AAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           T E+  G  +    LK  +E          + RAE    V+  GPPG GKT LA+ VA E
Sbjct: 431 TWEDIIGLDQVKQELKEVVEWPLKYSKLYEEMRAEVPSGVMLYGPPGTGKTMLAKAVAHE 490

Query: 78  LGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAM 129
            G NF + SGP +     G+    +  +  R       V+F DEI  ++ +        +
Sbjct: 491 SGANFIAVSGPELMNMWVGETERAIREVFKRARQASPTVVFFDEIDAIATVRGSD-PNKV 549

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            D  L  M+ E     S K    R   +AAT R  ++   L    R    + +   + E 
Sbjct: 550 TDRALSQMLTEMDGVSSRK---ERVIFMAATNRPDIVDPALIRPGRLEKLVYVPPPDFET 606

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
            K + QR         + + +    M    TP     ++ R    A
Sbjct: 607 RKIMFQRLVTKHPFDESIDFSYLAKMSESFTPADIKGVVNRAVLLA 652



 Score = 53.9 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 84/233 (36%), Gaps = 24/233 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
           +LE+  G  +   +LK  I+ A  + E            VL  GPPG GKT +A+ +A  
Sbjct: 171 SLEDVGGLTDQIMSLKEIIDIALVKPEVPRLFGFRPPKGVLLYGPPGTGKTLIAKALANS 230

Query: 78  LGVNFRSTSGPVIAKA------GDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM 129
           +  NF   SGP I           L  +    E     ++FIDEI  ++   +     A 
Sbjct: 231 VMANFFFISGPEIGSKYYGESEKRLREIFEQAEKSAPSMIFIDEIDAIAPNRDVTNGEAD 290

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
           +     L+      + S  + +     + AT R   +   L+   RF   I +   +   
Sbjct: 291 KRIVAQLLTLMDGVSSSGGLLV-----LGATNRPNAIDPALRRPGRFDREIEIPVPDKRA 345

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
              I++   +   LA  D     IA  + G        L R    + +   + 
Sbjct: 346 RLDIIKIHTRRIPLA-EDVDLEAIASMTNGFVGADLEALVREATMSALRRTQN 397


>gi|75069980|sp|Q59HJ6|LONM_BOVIN RecName: Full=Lon protease homolog, mitochondrial; AltName:
           Full=Lon protease-like protein; Short=LONP; AltName:
           Full=Mitochondrial ATP-dependent protease Lon; AltName:
           Full=Serine protease 15; Flags: Precursor
 gi|62084374|dbj|BAD91492.1| ATP-dependent Lon protease [Bos taurus]
          Length = 961

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 73/192 (38%), Gaps = 33/192 (17%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI  ++ R      +L F GPPG+GKT++A+ +AR L   +   S
Sbjct: 490 EDHYGMEDVKKRILEFIAVSQLRGSTQGKILCFYGPPGVGKTSIARSIARALNREYFRFS 549

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ ++    +        
Sbjct: 550 VGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLVLIDEVDKIGRGYQGDPSSALL 609

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V ++LS+   I        +  PL+DR  + I ++ 
Sbjct: 610 ELLDPEQNANFLD-------HYLDVPVDLSKVLFICTANITETIPEPLRDRMEM-INVSG 661

Query: 183 YEIEDLKTIVQR 194
           Y  ++   I +R
Sbjct: 662 YVAQEKLAIAER 673


>gi|302769330|ref|XP_002968084.1| hypothetical protein SELMODRAFT_440261 [Selaginella moellendorffii]
 gi|300163728|gb|EFJ30338.1| hypothetical protein SELMODRAFT_440261 [Selaginella moellendorffii]
          Length = 857

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 49/190 (25%), Positives = 73/190 (38%), Gaps = 24/190 (12%)

Query: 24  PRTLEEFTGQVEACSNLKVFIE-------AAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           P    +  G  EA   L+  +E        A+  A     VL VGPPG GKT LA+ VA 
Sbjct: 364 PIMFADVAGVDEAKEELEEIVEFLRSPERYARLGARPPRGVLLVGPPGTGKTLLAKAVAG 423

Query: 77  ELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPA 128
           E  V F S S            A  +  L    +     ++FIDEI  ++   +  L   
Sbjct: 424 EASVPFISCSASEFVELYVGMGASRVRELFARAKKNAPSIVFIDEIDAVAKGRDGRLRSV 483

Query: 129 MED---FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183
             D     L+ ++ E     S     S   +I AT R  +L   L+   RF   + +   
Sbjct: 484 SNDEREQTLNQLLTELDGFESA----STVIVIGATNRADVLDPALRRPGRFDRIVMVEPP 539

Query: 184 EIEDLKTIVQ 193
           + +  + I+ 
Sbjct: 540 DRQGREEILN 549


>gi|313215883|emb|CBY37301.1| unnamed protein product [Oikopleura dioica]
          Length = 626

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 71/187 (37%), Gaps = 32/187 (17%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI  ++ R      +L F GPPG GKT++A+ +AR LG  +   S
Sbjct: 253 EDHYGMNDVKDRILEFICTSQLRGSVQGKILCFHGPPGTGKTSIAKSIARSLGRKYYRFS 312

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              ++   ++                        +  ++ IDEI +L    +        
Sbjct: 313 VGGMSDVAEIKGHRRTYVGAMPGKLVQCLKKTESENPLILIDEIDKLGRGYQGDPSSALL 372

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V I+LS+   I     +  ++ PL+DR  +     +
Sbjct: 373 ELLDPEQNVGFLD-------HYLDVPIDLSKALFICTANDLSTISGPLRDRMEMIEVAGY 425

Query: 183 YEIEDLK 189
              E ++
Sbjct: 426 ITDEKVE 432


>gi|302390612|ref|YP_003826433.1| membrane protease FtsH catalytic subunit [Thermosediminibacter
           oceani DSM 16646]
 gi|302201240|gb|ADL08810.1| membrane protease FtsH catalytic subunit [Thermosediminibacter
           oceani DSM 16646]
          Length = 599

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 63/249 (25%), Positives = 95/249 (38%), Gaps = 29/249 (11%)

Query: 26  TLEEFTGQVEACSNL----------KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           T ++  G  EA   L          K FIE     A     VL VGPPG GKT LA+ VA
Sbjct: 155 TFKDVAGVDEAKEELQEVVEFLKHPKKFIEMG---ARIPKGVLLVGPPGTGKTLLARAVA 211

Query: 76  RELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYP 127
            E GV F S SG       V   A  +  L    +     ++FIDEI  +       L  
Sbjct: 212 GEAGVPFFSISGSDFVEMFVGVGAARVRDLFDQAKKNAPCIVFIDEIDAVGRQRGAGLGG 271

Query: 128 AMEDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183
             ++ +  L  ++ E       +       +IAAT R  +L   L    RF   + ++  
Sbjct: 272 GHDEREQTLNQLLVEMDGFTVNEG----IIIIAATNRPDILDPALLRPGRFDRQVVVDRP 327

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           +++  + I++  A+   +A     +         T      L+      A   + K IT 
Sbjct: 328 DVKGREEILKVHARNKPIAEDVNLSVLARRTPGFTGADLENLMNEAALLAARRNKKRITM 387

Query: 244 EIADAALLR 252
           E  + A+ R
Sbjct: 388 EELEEAITR 396


>gi|295691235|ref|YP_003594928.1| DNA polymerase III subunits gamma and tau [Caulobacter segnis ATCC
           21756]
 gi|295433138|gb|ADG12310.1| DNA polymerase III, subunits gamma and tau [Caulobacter segnis ATCC
           21756]
          Length = 616

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 79/232 (34%), Gaps = 21/232 (9%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RPRT E+  GQ      L      A +        +  G  G+GKTT A+++AR L
Sbjct: 68  ARKYRPRTFEDLIGQEAMVRTL----ANAFSTGRIAHAFMLTGVRGVGKTTTARLLARAL 123

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYP-----AMED 131
                +  GP +    +       +E R  DVL +D   R  +     L        +E 
Sbjct: 124 NYETDTVKGPSVDLTTEGYHCRAIIEGRHMDVLELDAASRTKVDEMRELLDGVRYAPVEA 183

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT +  +   +  R      L  
Sbjct: 184 RYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAKFIFATTEIRKVPVTILSRCQ-RFDLRR 242

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
            E + L     R +   G  +  +A   IA  + G+ R    LL +     E
Sbjct: 243 VEPDVLVKHFDRISAKEGARIEMDALALIARAAEGSVRDGLSLLDQAIVQTE 294


>gi|320354016|ref|YP_004195355.1| DNA polymerase III subunits gamma and tau [Desulfobulbus
           propionicus DSM 2032]
 gi|320122518|gb|ADW18064.1| DNA polymerase III, subunits gamma and tau [Desulfobulbus
           propionicus DSM 2032]
          Length = 648

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 76/227 (33%), Gaps = 25/227 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  E  GQ      L    + A A+      ++F G  G GKTTLA+++A+ L    
Sbjct: 11  RPQTFAEVVGQKAVVRTL----QNALAQQRVAQALIFSGVRGTGKTTLARIMAKALNCE- 65

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE--------ILYPAMEDFQL 134
               GP         +     +   +   +     +  ++E           P    +++
Sbjct: 66  ---QGPATEPCNLCRSCRDIADGASIDLQEVDGASNRGIQEIRELKEKIRFMPTSSRYKI 122

Query: 135 DLM------VGEGPSARSVKINLSR--FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++        E  +A    +         + ATT +  +   +  R            E
Sbjct: 123 IIIDEVHMLTTEAFNALLKTLEEPPDHVYFMFATTELHKVPVTILSRCQRYELKRLGHRE 182

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
            L     R A+  G+ +   A   I   + G+ R    LL ++  + 
Sbjct: 183 -LAAHFTRLAEQEGVRMEPAAVDMIVREAGGSVRDGLSLLDQIFSYC 228


>gi|239996413|ref|ZP_04716937.1| DNA polymerase III subunits gamma and tau [Alteromonas macleodii
           ATCC 27126]
          Length = 557

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 55/300 (18%), Positives = 92/300 (30%), Gaps = 68/300 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP    E  GQ    S +   ++      + L H  LF G  G+GKTT+A++ ++ L   
Sbjct: 11  RPGKFSELVGQEHVVSAISNALD-----NDRLHHAYLFTGTRGVGKTTIARIFSKSLNCE 65

Query: 82  ------------------------FRSTSGPVIAKAGDLAALLTNLEDRD------VLFI 111
                                             K  D   LL N++ +       V  I
Sbjct: 66  EGQGANPCGQCNTCKDIEQGNYVDLLEIDAASRTKVEDTRELLDNVQYKPTRGRYKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSKHSFNALLKTLEE------------------PPPHVKFLLATTDPQKLPITIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L     E +   +Q   +   L    +A   +A  ++G+ R A  L     D
Sbjct: 168 SRC-LQFNLKAMSREQIVGQLQHILEHEQLPFEPQALALLARAAQGSMRDALSL----TD 222

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
            A                L  +  D +G    + + L ++       P  +  +   ++E
Sbjct: 223 QAIAQGGN--------QVLASVVTDMLGLMDKN-QLLKVVHAVVSKSPADVLQLVNDIAE 273


>gi|91086235|ref|XP_966692.1| PREDICTED: similar to transitional endoplasmic reticulum ATPase
           TER94 isoform 1 [Tribolium castaneum]
 gi|270011017|gb|EFA07465.1| transitional endoplasmic reticulum ATPase TER94 [Tribolium
           castaneum]
          Length = 803

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 48/258 (18%), Positives = 88/258 (34%), Gaps = 24/258 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVARE 77
           T ++  G       L+  ++      +            VLF GPPG GKT LA+ +A E
Sbjct: 473 TWDDIGGLQNVKKELQELVQYPVEHPDKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANE 532

Query: 78  LGVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
              NF S  GP +         A   D+     +     VLF DE+  ++      L  A
Sbjct: 533 CQANFISVKGPELLTMWFGESEANVRDIFDKARSAAP-CVLFFDELDSIAKSRGGNLGDA 591

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
                 D ++ +  +            +I AT R  ++   +    R    I +   + +
Sbjct: 592 --GGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEK 649

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I +   + + +A   +      +    +      + +R    A     +T  R   
Sbjct: 650 SREAIFKANLRKSPVAKDVDLTYIAKVTHGFSGADLTEICQRACKLAIRQSIETEIRRER 709

Query: 247 DAALLRLAIDKMGFDQLD 264
           + A+   +   M  D+ D
Sbjct: 710 ERAMNPNSA--MDLDEDD 725



 Score = 52.4 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 50/263 (19%), Positives = 89/263 (33%), Gaps = 38/263 (14%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARA--------EALDHVLFVGPPGLGKTTLAQVVARELG 79
           ++  G  +  + +K  +E              +    +L  GPPG GKT +A+ VA E G
Sbjct: 202 DDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG 261

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMED 131
             F   +GP I          +L       +     ++FIDE+  ++   E+        
Sbjct: 262 AFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHGEVERR 321

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
               L+       +S     S   ++AAT R   +   L+   RF   I +   +     
Sbjct: 322 IVSQLLTLMDGMKKS-----SHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRL 376

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            +++   K   LA  D    +IA  + G        L               +       
Sbjct: 377 EVLRIHTKNMKLA-DDVDLEQIAAETHGHVGADLASL--------------CSEAALQQI 421

Query: 250 LLRLAIDKMGFDQLDLRYLTMIA 272
             ++ +  +  DQ+D   L  +A
Sbjct: 422 REKMDLIDLDDDQVDAEVLNSLA 444


>gi|197294583|ref|YP_001799124.1| ATP-dependent Zn protease [Candidatus Phytoplasma australiense]
 gi|171853910|emb|CAM11873.1| ATP-dependent Zn protease [Candidatus Phytoplasma australiense]
          Length = 426

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 55/213 (25%), Positives = 85/213 (39%), Gaps = 20/213 (9%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA------KAGDLAALLTNLEDRD--V 108
           VL  GPPG GKT LA+ +A EL   F   SG           A  +  +   ++     V
Sbjct: 212 VLLYGPPGTGKTLLAKALANELEFPFYFFSGSEFVEMYVGLGAARIRNMFQEVKKNTPCV 271

Query: 109 LFIDEIHRLSIIVEEIL---YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
           LFIDEI  L +             +D  L+ ++ E     +    L++  + AAT R  +
Sbjct: 272 LFIDEIDALGMKRGTGFVTSGSHEKDQTLNQLLVEMDGFET----LNKVIVFAATNRADI 327

Query: 166 LTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSR-GTPRIA 222
           L   L    RF    ++N  +I+  + I++  AK   +   D    EIA  +   T    
Sbjct: 328 LDPALLRPGRFDRKFKINLPDIKAREAILKLHAKNKKINNND--LEEIAKITEGATGAQL 385

Query: 223 GRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255
             +L      A     + I  E    A+ R+A+
Sbjct: 386 AAILNEASILAIRDKKELIDFETLKKAINRIAL 418


>gi|332028592|gb|EGI68629.1| Spermatogenesis-associated protein 5 [Acromyrmex echinatior]
          Length = 796

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 87/246 (35%), Gaps = 22/246 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDHV--------LFVGPPGLGKTTLAQVVARE 77
              +  GQ +    LK  +E      EA   +        L  GPPG  KT +A+ +A E
Sbjct: 529 RWSDIGGQEDLKLKLKQSVEWPLKHPEAFVRMGITPPRGVLMFGPPGCSKTMIAKALATE 588

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAM 129
             VNF +  GP +           +  +          ++FIDEI  L          + 
Sbjct: 589 SKVNFLNIKGPELFSKWVGESEKAVREVFRKARQVAPSIIFIDEIDALGGERGSSSGGSG 648

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            + Q  ++         V   L   TL+AAT R   +   L    R    I +   + + 
Sbjct: 649 SNVQERVLAQLLTELDGVTA-LGNVTLVAATNRPDKIDKALLRPGRLDRIIYVGLPDEKT 707

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL---RRVRDFAEVAHAKTITRE 244
            + I +   +   +   +    E+  R++       + L     ++   E  +A  +T+E
Sbjct: 708 RREIFEIKLRHMNIVKEEVNIMELVSRTKDYTGAEIQALCHEAAMKALEEDINATLVTKE 767

Query: 245 IADAAL 250
             DAA 
Sbjct: 768 HFDAAF 773


>gi|118411032|ref|YP_874427.1| cell division protein FtsH-like protein [Phaeodactylum tricornutum]
 gi|116739779|gb|ABK20650.1| cell division protein FtsH-like protein [Phaeodactylum tricornutum]
          Length = 624

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 66/297 (22%), Positives = 103/297 (34%), Gaps = 31/297 (10%)

Query: 23  RPRT---LEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQ 72
           RP T    ++  G  EA +  +  +   K         A+    VL VGPPG GKT LA+
Sbjct: 172 RPDTGISFDDIAGIDEAKAEFEEIVSFLKEPERYTLVGAKIPKGVLLVGPPGTGKTLLAK 231

Query: 73  VVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEI 124
            +A E  V F S +G           A  +  L     +    ++FIDEI  +       
Sbjct: 232 AIANEANVPFYSVAGSEFVEMFIGIGASRIRDLFKKASENTPCIVFIDEIDAVGRERGAG 291

Query: 125 LYPAMEDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRL 180
           +    ++ +  L  ++ E    +  K       ++ AT RV +L   L    RF   I +
Sbjct: 292 VGGGNDEREQTLNQLLTEMDGFKENKG----VIVVGATNRVDILDAALLRPGRFDRQITV 347

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
              +      I++  AK    A               +      LL      A      T
Sbjct: 348 GLPDRLGRIGILKVHAKNKPFAEDVSLVQLANRTPGFSGADLANLLNEAAILATRYKKVT 407

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
           IT+   + A  R+     G    D +   +IA +  G       I   + E  D +E
Sbjct: 408 ITKNEVNEAADRIIGGIAGSTMEDTKNKKLIAYHEVGH-----AIVGSVLENHDEVE 459


>gi|320532120|ref|ZP_08032996.1| DNA polymerase III, subunit gamma and tau [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320135669|gb|EFW27741.1| DNA polymerase III, subunit gamma and tau [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 357

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 41/173 (23%), Positives = 62/173 (35%), Gaps = 22/173 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T +E  GQ    + L   + A +         LF GP G GKTT A+++AR
Sbjct: 4   ALYRRYRPDTFQEVIGQDHVTAPLMAALRADRVTHAY----LFSGPRGCGKTTSARILAR 59

Query: 77  ELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PA 128
            L      T  P        DLA         DV+ ID      +     L       PA
Sbjct: 60  CLNCAQAPTDTPCGTCPSCRDLA--TGGPGSLDVVEIDAASHNGVDDARDLRERAAFAPA 117

Query: 129 MEDFQLDLMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
            + +++ ++         G     + V+   +    I ATT    +   ++ R
Sbjct: 118 RDRYKIFILDEAHMVTAQGFNALLKLVEEPPAHVKFIFATTEPEKVIGTIRSR 170


>gi|319408027|emb|CBI81681.1| DNA polymerase III gamma and tau subunit [Bartonella
           schoenbuchensis R1]
          Length = 642

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 53/290 (18%), Positives = 99/290 (34%), Gaps = 22/290 (7%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
              +         RP+   +  GQ      L    E  +         +  G  G+GKTT
Sbjct: 5   PAATTYRVLARKYRPQNFSDLIGQEAMVRTLTNAFETGRIAQAW----MLTGIRGVGKTT 60

Query: 70  LAQVVARELGVNFRSTSGPVIA--KAGDLAALLTNLEDRDVLFID-----EIHRLSIIVE 122
            A+++AR L    +    P IA    G+  A +      DV+ +D      I  +  I+E
Sbjct: 61  TARILARALNYKTKDIDQPTIALNTLGEHCAQIIEGRHIDVIEMDAASHTGIDDIREIIE 120

Query: 123 EILYPAMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           +I Y  +       ++ E             ++++        I ATT +  +   +  R
Sbjct: 121 QIRYRPVSARYKIYIIDEIHMLSTQAFNGLLKTLEEPPPHIKFIFATTEIRKVPITILSR 180

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                 L   E   L   +++ AK   + V D+A   I   + G+ R A  +  +   ++
Sbjct: 181 CQ-RFDLRRIESAVLVEYLRKIAKHEKIKVEDQALSLIVRAAEGSARDALSIFDQAIAYS 239

Query: 234 EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIE 283
               +    R +   A     ID   F  +    ++ ++        G +
Sbjct: 240 NGKVSTVSVRTMLGLADQARIIDLFEF-VMKGNIVSALSELRSQYDAGAD 288


>gi|315607707|ref|ZP_07882701.1| ATP-dependent metallopeptidase HflB [Prevotella buccae ATCC 33574]
 gi|315250643|gb|EFU30638.1| ATP-dependent metallopeptidase HflB [Prevotella buccae ATCC 33574]
          Length = 690

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 61/263 (23%), Positives = 106/263 (40%), Gaps = 29/263 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ  A   ++  +E  K          +     L VGPPG GKT LA+ VA E 
Sbjct: 191 TFKDVAGQAGAKQEVEEIVEFLKNPKKYTNLGGKIPKGALLVGPPGTGKTLLAKAVAGEA 250

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEIL---YP 127
           GV F S SG       V   A  +  L    +++   ++FIDEI  +     +       
Sbjct: 251 GVPFFSMSGSDFVEMFVGVGASRVRDLFRQAKEKAPCIIFIDEIDAVGRARAKNSMMNGN 310

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           + ++  L+ ++ E     +     S   ++AAT RV +L   L    RF   I ++  ++
Sbjct: 311 SEQENTLNALLTEMDGFGTN----SGVIILAATNRVDMLDAALLRAGRFDRQIHVDLPDL 366

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
            + K I Q    +    V  + + +I + +R TP  +G  +  V + A +  A+     +
Sbjct: 367 NERKEIFQ----VHLKPVKVDDSVDIDLLARQTPGFSGADIANVCNEAALIAARHDRSAV 422

Query: 246 ADAA-LLRLAIDKMGFDQLDLRY 267
                L  +     G ++     
Sbjct: 423 TKQDFLDAVDRIIGGLEKKTKVM 445


>gi|229113196|ref|ZP_04242691.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus
           Rock1-15]
 gi|228670222|gb|EEL25570.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus
           Rock1-15]
          Length = 541

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 60/224 (26%), Gaps = 42/224 (18%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +S   A     RP +  +  GQ    +     I  A    +     L  GP G GKTT+A
Sbjct: 6   MSNYVALYRAYRPNSFNDLVGQDHIKTT----IMNAIKLEKVAHAYLLSGPRGTGKTTVA 61

Query: 72  QVVARELGV-------------------------NFRSTSGPVIAKAGDLAALLTNL--- 103
           +++ + +                           +             ++  +   +   
Sbjct: 62  KIIGKGVNCLAPLSNGEPCQKCANCSDINNNKFADILEFDAASNNGVEEIRQIRDQVHLA 121

Query: 104 ---EDRDVLFIDEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIA 158
                  V  IDE+H LS      L   +E+    +  ++      +  K  +SR     
Sbjct: 122 PVTGKYKVYIIDEVHMLSNSAFNALLKTLEEPPAHVIFILATTDPQKVPKTIISRCQQFE 181

Query: 159 ATTRVGLLTNPLQDRFGIPIRLNF--YEIEDLKTIVQRGAKLTG 200
                      + DR              E L  I Q       
Sbjct: 182 FRNIP---LQAMIDRLKFISHDQGIRITDEALHLISQLAEGGLR 222


>gi|225426100|ref|XP_002276971.1| PREDICTED: hypothetical protein isoform 2 [Vitis vinifera]
          Length = 829

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 51/286 (17%), Positives = 95/286 (33%), Gaps = 41/286 (14%)

Query: 9   SRNVSQEDADISLLRPR---------TLEEFTGQVEACSNLKVFIEAAKARAE------- 52
           +  V  ++     +RP          T  +     E   +L+  +     R +       
Sbjct: 490 APEVPPDNEFEKRIRPEVIPASEIGVTFADIGAMDEIKESLQELVMLPLRRPDLFEGGLL 549

Query: 53  -ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLED 105
                +L  GPPG GKT LA+ +A E G +F + S   I          ++ AL T    
Sbjct: 550 KPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAK 609

Query: 106 --RDVLFIDEIH-----RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIA 158
               ++F+DE+      R  +   E +     +F              +     R  ++A
Sbjct: 610 VSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFM-------THWDGLLTKPGERILVLA 662

Query: 159 ATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGT 218
           AT R   L   +  RF   I +    +E+ + I++    L       E      + +  T
Sbjct: 663 ATNRPFDLDEAIIRRFERRIMVGLPSVENREMIMK---TLLSKEKVAEGLDFKEL-ATMT 718

Query: 219 PRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLD 264
              +G  L+ +   A     + + ++     L +    +      D
Sbjct: 719 EGYSGSDLKNLCTTAAYRPVRELIQQERLKDLEKKRRAEQRLSPDD 764


>gi|196047917|ref|ZP_03115095.1| DNA polymerase III subunit gamma/tau [Bacillus cereus 03BB108]
 gi|196021173|gb|EDX59902.1| DNA polymerase III subunit gamma/tau [Bacillus cereus 03BB108]
          Length = 543

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 47/242 (19%), Positives = 85/242 (35%), Gaps = 21/242 (8%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP +  E  GQ      L   +++ K         +  GP G GKT++ ++ A+
Sbjct: 4   ALYRKYRPSSFGELIGQNHIKQTLLNALKSNKFTHAY----MLTGPRGTGKTSIGKLFAK 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +       +G           ++ N    D+L ID      + ++  I E++ Y     
Sbjct: 60  AINCEHLV-NGEPCNDCNQCKQIMNNSHP-DILEIDAASNNGVEQIRDIREQVTYAPSVG 117

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT +  +   +  R         
Sbjct: 118 KYKVYIIDEVHMLSIGAFNALLKTLEEPPKNVVFILATTDIHKVPVTIISRCQ-RFDFRR 176

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
              +DL   ++  A    L + +EA   I+M ++G  R A  LL +   FA     K   
Sbjct: 177 IGQKDLIERMKFVASNEELQIEEEALQLISMLAQGGMRDALSLLDQTVAFASGEITKNDV 236

Query: 243 RE 244
            E
Sbjct: 237 SE 238


>gi|16330139|ref|NP_440867.1| DNA polymerase III subunit [Synechocystis sp. PCC 6803]
 gi|1652627|dbj|BAA17547.1| DNA polymerase III subunit [Synechocystis sp. PCC 6803]
          Length = 1116

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 38/102 (37%), Gaps = 4/102 (3%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +      RP+T  +  GQ    + L   IE    +   +   LF GP G GKT+ A+++A
Sbjct: 4   EPLHHKYRPQTFADLVGQTAIAATLSNAIE----QERIVPAYLFTGPRGTGKTSSARILA 59

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           + L                     +TN    DV+ ID     
Sbjct: 60  KSLNCIAGDRPTATPCGQCATCRAITNGSALDVIEIDAASNT 101


>gi|119945937|ref|YP_943617.1| DNA polymerase III, subunits gamma and tau [Psychromonas ingrahamii
           37]
 gi|119864541|gb|ABM04018.1| DNA polymerase III, tau subunit / DNA polymerase III, gamma subunit
           [Psychromonas ingrahamii 37]
          Length = 774

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 56/175 (32%), Gaps = 36/175 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP   +E  GQ    + L      + A+       LF G  G+GKTT+A+++A+ L    
Sbjct: 11  RPGNFQEVVGQQHVLTALS----NSLAQNRLHHAYLFSGTRGVGKTTIARILAKSLNCEK 66

Query: 83  ------------------------RSTSGPVIAKAGDLAALLTNLEDRD------VLFID 112
                                            K  D   +L N++ +       V  ID
Sbjct: 67  GVTATPCGACVHCQAIDQGRFVDLLEIDAASRTKVDDTREMLDNVQYKPAQGRYKVYLID 126

Query: 113 EIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
           E+H LS      L   +E+    +  ++      +     LSR         +  
Sbjct: 127 EVHMLSKHSFNALLKTLEEPPEYVKFLLATTDPQKLPITVLSRCLQFHLKAILPQ 181


>gi|299472741|emb|CBN80309.1| RFC small subunit [Ectocarpus siliculosus]
          Length = 323

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 43/214 (20%), Positives = 80/214 (37%), Gaps = 21/214 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP  L++ +G       L+ F        EA  +++  GPPG GKT+    +A+      
Sbjct: 9   RPTRLQDVSGNEHVIRALQSFTSM-----EATPNMILHGPPGSGKTSSIISMAKSFFGRT 63

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI--IVEEILYPAMEDFQLDLMVGE 140
             ++  +   AGD  ++ T          D+IH  +    V +    A++   LD   G 
Sbjct: 64  NISTMTLELNAGDSRSIGTMR--------DQIHFFTRCSSVTDRSTNALKLVILDEADGL 115

Query: 141 GPSARSVKINL-----SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
              A+    +L      R         +  L++ L+ R          +++   T ++  
Sbjct: 116 TSCAQRALRHLIETTSGRARFCLCCNYISRLSSGLRSRCTSFSFSGIGKVQLAHT-LREV 174

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           A+   L V++E    +     G  R    LL+ +
Sbjct: 175 ARKERLQVSEEGLEAVVKVCAGDARQGINLLQSL 208


>gi|227485726|ref|ZP_03916042.1| cell division protein FtsH [Anaerococcus lactolyticus ATCC 51172]
 gi|227236281|gb|EEI86296.1| cell division protein FtsH [Anaerococcus lactolyticus ATCC 51172]
          Length = 680

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 55/247 (22%), Positives = 102/247 (41%), Gaps = 27/247 (10%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKARAE-------ALDHVLFVGPPGLGKTTLAQVVARE 77
           +T ++  GQ EA  +L   ++      +           +L VGPPG GKT LA+ VA E
Sbjct: 170 KTFKDVAGQEEAKESLAEIVDFLHNPGKYKEIGARVPKGILLVGPPGTGKTLLAKAVAGE 229

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
             V F + SG           A  +  L    +++   ++FIDEI  +    +   Y   
Sbjct: 230 AKVPFFTISGSEFVEMFVGMGASKVRDLFKQAKEKAPCIVFIDEIDAIGKKRDVSGYSGN 289

Query: 130 EDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           ++ +  L  ++ E     + +       L+AAT R  +L   L    RF   +++   ++
Sbjct: 290 DEREQTLNQLLNEMDGFDAAEG----VVLLAATNRPEILDPALTRPGRFDRQVQVELPDL 345

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           +  + I++  AK       +    EIA R+ GT   +G  L  + +   +   +   +++
Sbjct: 346 KGREDILKVHAKKIKKE-ENIDYEEIAKRTAGT---SGADLANIVNEGALRAVREGRKKL 401

Query: 246 ADAALLR 252
           +   L  
Sbjct: 402 SQEDLEE 408


>gi|147905139|ref|NP_001082757.1| replication factor C (activator 1) 4, 37kDa [Xenopus laevis]
 gi|34097966|dbj|BAC82198.1| replication factor C p37 subunit [Xenopus laevis]
 gi|120537910|gb|AAI29743.1| RFC2 protein [Xenopus laevis]
          Length = 363

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 41/242 (16%), Positives = 71/242 (29%), Gaps = 45/242 (18%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+ ++E   Q E  + LK  ++ A      L ++LF GPPG GKT+     +R
Sbjct: 38  PWVEKYRPKCVDEVAFQDEVVAVLKKSLQGAD-----LPNLLFYGPPGTGKTSTILAASR 92

Query: 77  E------LGVNFRSTSGPVIAKAGDLAALLTNLEDRD---------------VLFIDEIH 115
           E              +         +   + N                    ++ +DE  
Sbjct: 93  ELYGPELFRQRVLELNASDERGIQVVREKVKNFAQLTVGGTRSDGKPCPPFKIIILDEAD 152

Query: 116 RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
            ++   +  L   ME                     +RF        V  +  PL  R  
Sbjct: 153 SMTSAAQAALRRTMEKESKT----------------TRF--CLICNYVSRIIEPLTSRCS 194

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
              R      +     +    +   + +T+EA   +   S G  R A   L+        
Sbjct: 195 -KFRFKPLADKIQTQRLLSICEKENVQITNEAISCLVEVSEGDLRKAITFLQSAARLTRG 253

Query: 236 AH 237
             
Sbjct: 254 KE 255


>gi|229125265|ref|ZP_04254367.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus
           95/8201]
 gi|228658191|gb|EEL13929.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus
           95/8201]
          Length = 541

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 60/224 (26%), Gaps = 42/224 (18%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +S   A     RP +  +  GQ    +     I  A    +     L  GP G GKTT+A
Sbjct: 6   MSNYVALYRAYRPNSFNDLVGQDHIKTT----IMNAIKLEKVAHAYLLSGPRGTGKTTVA 61

Query: 72  QVVARELGV-------------------------NFRSTSGPVIAKAGDLAALLTNL--- 103
           +++ + +                           +             ++  +   +   
Sbjct: 62  KIIGKGVNCLAPLSNGEPCQKCANCSDINNNKFADILEFDAASNNGVEEIRQIRDQVHLA 121

Query: 104 ---EDRDVLFIDEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIA 158
                  V  IDE+H LS      L   +E+    +  ++      +  K  +SR     
Sbjct: 122 PVTGKYKVYIIDEVHMLSNSAFNALLKTLEEPPAHVIFILATTDPQKVPKTIISRCQQFE 181

Query: 159 ATTRVGLLTNPLQDRFGIPIRLNF--YEIEDLKTIVQRGAKLTG 200
                      + DR              E L  I Q       
Sbjct: 182 FRNIP---LQAMIDRLKFISHDQGIRITDEALHLISQLAEGGLR 222


>gi|289192266|ref|YP_003458207.1| AAA family ATPase, CDC48 subfamily [Methanocaldococcus sp.
           FS406-22]
 gi|288938716|gb|ADC69471.1| AAA family ATPase, CDC48 subfamily [Methanocaldococcus sp.
           FS406-22]
          Length = 903

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 70/307 (22%), Positives = 104/307 (33%), Gaps = 52/307 (16%)

Query: 15  EDADISLLR------PR-TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLF 59
           +D + S +R      P    E+  G  E    L+  +E      E            VL 
Sbjct: 432 KDVEPSAMREVLVEVPNVKWEDIGGLEEVKQELREAVEWPLKAKEVFEKIGVRPPKGVLL 491

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFI 111
            GPPG GKT LA+ VA E G NF S  GP I           +  +          ++F 
Sbjct: 492 FGPPGTGKTLLAKAVANESGANFISVKGPEIFSKWVGESEKAIREIFRKARQSAPCIIFF 551

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPL- 170
           DEI  ++      L  A+ D  ++ ++ E       K       +IAAT R  ++   L 
Sbjct: 552 DEIDAIAPKRGRDLSSAVTDKVVNQLLTELDGMEEPK----DVIVIAATNRPDIIDPALL 607

Query: 171 ----QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
                DR  +    +     D+  I  R   L      D +  E+A ++ G        L
Sbjct: 608 RPGRLDRVILVPVPDEKARLDIFKIHTRAMNL----AEDVSLEELAKKTEGYTGADIEAL 663

Query: 227 RRVRDFAEVAHA--KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIET 284
            R      V  +  K    E A   L              + YL  I+  F G  V + +
Sbjct: 664 CREAAMLAVRESIGKPWGIETALRDL--------------INYLQSISGTFRGAAVELNS 709

Query: 285 ISAGLSE 291
           +     E
Sbjct: 710 VIKATKE 716



 Score = 57.8 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 53/197 (26%), Positives = 74/197 (37%), Gaps = 23/197 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAA--------KARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           T E+  G  E    ++  IE          K   E    VL VGPPG GKT LA+ VA E
Sbjct: 177 TYEDIGGLKEEVKKVREMIELPMRHPELFEKLGIEPPKGVLLVGPPGTGKTLLAKAVANE 236

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM 129
            G NF   +GP I          +L  +    E+    ++FIDEI  ++   +E      
Sbjct: 237 AGANFYVINGPEIMSKYVGETEENLRKIFEEAEENAPSIIFIDEIDAIAPKRDEATGEVE 296

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                 L+               +  +I AT R   L   L+   RF   I +   + E 
Sbjct: 297 RRLVAQLLT-----LMDGLKGRGQVVVIGATNRPNALDPALRRPGRFDREIVIGVPDREG 351

Query: 188 LKTIVQRGAKLTGLAVT 204
            K I+Q   +   LA  
Sbjct: 352 RKEILQIHTRNMPLAED 368


>gi|134085346|ref|NP_001015569.2| lon protease homolog, mitochondrial precursor [Bos taurus]
 gi|126920922|gb|AAI33506.1| Lon peptidase 1, mitochondrial [Bos taurus]
 gi|296485747|gb|DAA27862.1| lon protease homolog, mitochondrial precursor [Bos taurus]
          Length = 961

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 73/192 (38%), Gaps = 33/192 (17%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI  ++ R      +L F GPPG+GKT++A+ +AR L   +   S
Sbjct: 490 EDHYGMEDVKKRILEFIAVSQLRGSTQGKILCFYGPPGVGKTSIARSIARALNREYFRFS 549

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ ++    +        
Sbjct: 550 VGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLVLIDEVDKIGRGYQGDPSSALL 609

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V ++LS+   I        +  PL+DR  + I ++ 
Sbjct: 610 ELLDPEQNANFLD-------HYLDVPVDLSKVLFICTANITETIPEPLRDRMEM-INVSG 661

Query: 183 YEIEDLKTIVQR 194
           Y  ++   I +R
Sbjct: 662 YVAQEKLAIAER 673


>gi|50307971|ref|XP_453984.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49643119|emb|CAG99071.1| KLLA0E00837p [Kluyveromyces lactis]
          Length = 814

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 47/218 (21%), Positives = 78/218 (35%), Gaps = 16/218 (7%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARA--EALDHVLFVGPPGLGKTTLAQVVARELGVNFRST 85
           ++   Q+     L +      +    E    VL  GPPG GKT++A  +A EL V F S 
Sbjct: 205 DDVIAQLMELIGLPILHPEIYSATGVEPPRGVLLHGPPGCGKTSIANALAGELQVPFISI 264

Query: 86  SGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           S P +           +  L    +     ++F DEI  ++   +      ME   +  +
Sbjct: 265 SAPSVVSGMSGESEKKIRELFDEAKSLAPCLVFFDEIDAITPKRDGGAQREMERRIVAQL 324

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRG 195
           +         K+      +I AT R   L   L+   RF   I LN         I+++ 
Sbjct: 325 LTSMDELSFEKMEGKPVIVIGATNRPDSLDAALRRAGRFDREICLNVPNETSRYFILKKM 384

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
           A    +        +    ++ TP   G  L+ +   A
Sbjct: 385 ASSLKID----GEIDFIKLAKLTPGFVGADLKALITAA 418



 Score = 45.5 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 80/226 (35%), Gaps = 18/226 (7%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLED 105
           K    A   VL  GPPG GKT LA+ VA E   NF S  GP +     G+    +  + +
Sbjct: 542 KVGISAPAGVLLWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESERAIRQVFN 601

Query: 106 RD------VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA 159
           R       ++F DE+  L     +          ++ ++ E       +       ++ A
Sbjct: 602 RARASVPCIIFFDELDALVPRR-DASLSESSSRVVNTLLTELDGLNDRRG----IFVVGA 656

Query: 160 TTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTP 219
           T R  ++   +  R G   +  F E+ + +  V     L     T  A      R     
Sbjct: 657 TNRPDMIDPAML-RPGRLDKTLFIELPNFEEKVDIMRTLIRSNGTPIADDVDINRIVNDE 715

Query: 220 R----IAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
           R        +   VR+ + +A  +   +     ++    +DK   D
Sbjct: 716 RCKNFSGADIAALVRESSVLALKRNFFKTDEIMSVGENNLDKEFED 761


>gi|241711081|ref|XP_002413415.1| replication factor C, subunit RFC4, putative [Ixodes scapularis]
 gi|215507229|gb|EEC16723.1| replication factor C, subunit RFC4, putative [Ixodes scapularis]
          Length = 287

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 75/225 (33%), Gaps = 37/225 (16%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPR+ +   GQ      L   ++  +     L H  LF G  G+GKTTL++++A+ L   
Sbjct: 18  RPRSFDTLVGQDHVVRALTHALDTQR-----LHHAWLFTGTRGVGKTTLSRILAKSLNCE 72

Query: 82  FRSTS------GPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAM 129
              TS              ++  LL             V  IDE+H L+      +   +
Sbjct: 73  TGITSKPCGLDAASNRGVEEMTQLLEQAVYAPSSGRYKVYMIDEVHMLTGHAFNAMLKTL 132

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           E+                    +    I ATT    +   +  R  +   L    +  + 
Sbjct: 133 EE------------------PPAHVKFILATTDPQKIPVTVLSRC-LQFNLKQMTVPAIV 173

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
             +Q       +     A   +A  + G+ R A  L  +   ++ 
Sbjct: 174 GHLQDILTQEEMQFELPALRLLAQAADGSMRDALSLSDQAIAYSA 218


>gi|330984323|gb|EGH82426.1| AAA ATPase [Pseudomonas syringae pv. lachrymans str. M301315]
          Length = 681

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 46/262 (17%), Positives = 92/262 (35%), Gaps = 22/262 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARA-------EALDHVLFVGPPGLGKTTLAQVVAREL 78
           +L++  G  +    L    E  + R        +   +V+  GP G+GKT +A+ +A+ L
Sbjct: 206 SLDDLVGLKDVKDELLQLQEMIENRKLYREYAVDKPFNVMLTGPAGVGKTKIARCLAKRL 265

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNL--EDRDVLFIDEIHRLSIIVEEILYPAME 130
            +     S   +           L  L      + R ++F+DE   +            E
Sbjct: 266 NIPMFYASAASLQSGYVGGGPRTLKKLAKMASKQKRAIIFLDEAESILQSRAGNGLQNYE 325

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
              ++ ++      +S    +              +   +  RF + +       ++ K 
Sbjct: 326 KDTINTLLSLLDGVKSKDREVIWLVASNMDEHKMNMDEAMLRRFPLKVNFRLPNFDERKE 385

Query: 191 IVQRGAKLTGLAV--TDEAACEIAMRSRG-TPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           I+ R       +    D     +A  + G +P +   L+ R    A  A AK  T+E   
Sbjct: 386 ILSRLVTKLDASKLADDIDLSHVAGVTTGMSPALLETLVSRASLMAVQAKAKV-TQERLL 444

Query: 248 AALLRLAI---DKMGFDQLDLR 266
            A  R+A+   D+    ++D +
Sbjct: 445 NAFERVAVGLTDRATTAKMDEK 466


>gi|311346940|gb|ADP90395.1| mitochondrial lon protease-like protein [Homo sapiens]
          Length = 959

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 77/217 (35%), Gaps = 35/217 (16%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI  ++ R      +L F GPPG+GKT++A+ +AR L   +   S
Sbjct: 489 EDHYGMEDVKKRILEFIAVSQLRGSTQGKILCFYGPPGVGKTSIARSIARALNREYFRFS 548

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ ++    +        
Sbjct: 549 VGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLILIDEVDKIGRGYQGDPSSALL 608

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V ++LS+   I        +  PL+DR  + I ++ 
Sbjct: 609 ELLDPEQNANFLD-------HYLDVPVDLSKVLFICTANVTDTIPEPLRDRMEM-INVSG 660

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTP 219
           Y  ++   I +R   L   A       E   +     
Sbjct: 661 YVAQEKLAIAERY--LLPQARALCGLDESKAKLSSDV 695


>gi|288800838|ref|ZP_06406295.1| cell division protein FtsH [Prevotella sp. oral taxon 299 str.
           F0039]
 gi|288332299|gb|EFC70780.1| cell division protein FtsH [Prevotella sp. oral taxon 299 str.
           F0039]
          Length = 671

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 58/248 (23%), Positives = 94/248 (37%), Gaps = 33/248 (13%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ  A   ++  +E  K          +     L VGPPG GKT LA+ VA E 
Sbjct: 187 TFKDVAGQAGAKQEIEEIVEFLKNPSRYTELGGKIPKGALLVGPPGTGKTLLAKAVAGEA 246

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM- 129
           GV F S SG       V   A  +  L    +++   ++FIDEI  +     +   P+  
Sbjct: 247 GVPFFSMSGSDFVEMFVGVGASRVRDLFRQAKEKSPCIIFIDEIDAVGRARSKN--PSTG 304

Query: 130 ----EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ-----DRFGIPIRL 180
                +  L+ ++ E     +     S   ++AAT RV +L + L      DR       
Sbjct: 305 GNDERENTLNALLTEMDGFGTN----SGVIILAATNRVDMLDSALLRAGRFDRQISVELP 360

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           + +E +++  +  R  K+      D  A +    S     IA          A     + 
Sbjct: 361 DLHERKEIFQVHLRNVKIDDTIDIDFLARQTPGFSGAD--IANVCNESALIAARQNKKQV 418

Query: 241 ITREIADA 248
             ++  DA
Sbjct: 419 GKQDFLDA 426


>gi|127513163|ref|YP_001094360.1| DNA polymerase III, subunits gamma and tau [Shewanella loihica
           PV-4]
 gi|126638458|gb|ABO24101.1| DNA polymerase III, subunits gamma and tau [Shewanella loihica
           PV-4]
          Length = 1113

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 48/240 (20%), Positives = 76/240 (31%), Gaps = 53/240 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV--------- 73
           RP T E+  GQ      L      A ++       LF G  G+GKT+LA++         
Sbjct: 11  RPATFEQVVGQSHVLHAL----TNALSQNRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQ 66

Query: 74  ---------------VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRD------VLFID 112
                          +A+   V+          K  D   LL N++ R       V  ID
Sbjct: 67  GVTATPCGQCASCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPTRGRFKVYLID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS      L   +E+                         + ATT    L   +  
Sbjct: 127 EVHMLSRSSFNALLKTLEE------------------PPEHVKFLLATTDPQRLPVTVLS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R  +   L    ++++   +        +   D A   +A  + G+ R A  L  +   F
Sbjct: 169 RC-LQFNLKSLTLDEICVQLGHILAQEQVGYDDGAVKLLAKAANGSMRDALSLTDQAIAF 227


>gi|70948653|ref|XP_743809.1| cell division protein FtsH [Plasmodium chabaudi chabaudi]
 gi|56523487|emb|CAH79007.1| cell division protein FtsH, putative [Plasmodium chabaudi chabaudi]
          Length = 850

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 58/243 (23%), Positives = 89/243 (36%), Gaps = 20/243 (8%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKAR-------AEALDHVLFVGP 62
            N           +P   +E  G  E+   L   ++  K R       A     VL VGP
Sbjct: 134 PNDQSPKKPSPHFKPVRFDEIAGIDESKIELLEVVDFIKNRERYQEMGARMPKGVLLVGP 193

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLED--RDVLFIDEI 114
           PG GKT LA+ VA E  V +  TSGP          A  +  L ++       ++FIDEI
Sbjct: 194 PGSGKTMLARAVATEANVPYIYTSGPEFIEIYVGQGAKRIRQLFSHARSVAPSIVFIDEI 253

Query: 115 HRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-- 172
             +               + D  + +         N     +I AT R+  L + L    
Sbjct: 254 DAIGGKRSTSASNGAGQKEHDQTLNQLLVEMDGFSNTVHIMVIGATNRIDTLDSALLRPG 313

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           RF   + +   ++   K I++   K     +    A +I   SR TP  +G  L  + + 
Sbjct: 314 RFDRIVYVPLPDVNGRKKILEIYIKKIKSNL---NANDIERMSRLTPGFSGADLENLVNE 370

Query: 233 AEV 235
           A +
Sbjct: 371 ATI 373


>gi|330796823|ref|XP_003286464.1| replication factor C subunit [Dictyostelium purpureum]
 gi|325083587|gb|EGC37036.1| replication factor C subunit [Dictyostelium purpureum]
          Length = 498

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 89/272 (32%), Gaps = 53/272 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP  +++  G  E  S L+     + ++   L +++  GPPG GKTT    +AR
Sbjct: 11  PWVEKYRPIEIKDIVGNEETVSRLE-----SISKDGNLPNIIISGPPGTGKTTSILCLAR 65

Query: 77  ------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIHRLSIIVE 122
                       EL  +   T   V  K    A     L      ++ +DE+  ++   +
Sbjct: 66  ALLGPNYKEAVYELNASDDRTLDVVRDKIKSFAQKKVTLPPGRHKIIILDEVDSMTSGAQ 125

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           + L   ME +                   +RF    A  +   +  P+Q R  +      
Sbjct: 126 QALRRIMELYSST----------------TRFAF--ACNQSTKIIEPIQSRCAVLRFTKL 167

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
             ++     ++    +  +  TD+    +   S G  R A   L+       + +A+ + 
Sbjct: 168 NNLQIAAR-LKEVMTIEKVPFTDDGLEALIFTSEGDMRQALNNLQATFSGLGLVNAENVN 226

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARN 274
           R                 DQ   + +  I   
Sbjct: 227 RVC---------------DQPHPKIIRAIIEQ 243


>gi|241762403|ref|ZP_04760482.1| DNA polymerase III, subunits gamma and tau [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
 gi|241373090|gb|EER62739.1| DNA polymerase III, subunits gamma and tau [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
          Length = 628

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 52/272 (19%), Positives = 91/272 (33%), Gaps = 30/272 (11%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M+D   L +             RP+   +  GQ      L   I    AR       L  
Sbjct: 1   MVDSSSLATP----YRVLARKYRPQKFSDLIGQDAMVRTLGNAI----ARDRLAHAFLLT 52

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGP-VIAKAGDLAALLTNLEDR--DVLFID----- 112
           G  G+GKT+ A+++A+ L    +   G   I   G+  A     E R  DV+ +D     
Sbjct: 53  GVRGVGKTSTARLIAKALNCVGKDGHGGMTIDPCGECEACRAIAEGRHIDVVEMDAASHT 112

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRV 163
            +  +  IVE + Y ++       ++ E             ++++   +    + ATT +
Sbjct: 113 GVDDIRDIVESVRYASVSARFKVYIIDEVHMLSKSAFNALLKTLEEPPAHVKFLFATTEI 172

Query: 164 GLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAG 223
             +   +  R      L       L     +  +L  +   +EA   IA  + G+ R   
Sbjct: 173 NKVPITVLSRCQ-RFDLRRISTATLTDYFSKVVQLEQVEAEEEALAMIAKAAEGSVRDGL 231

Query: 224 RLLRRVRDFAEVAHAKTITREIADAALLRLAI 255
            +L    D A    + +I        L     
Sbjct: 232 SIL----DQAIAHSSGSILAADVREMLGLSDR 259


>gi|126667422|ref|ZP_01738394.1| DNA polymerase III subunits gamma and tau [Marinobacter sp. ELB17]
 gi|126628178|gb|EAZ98803.1| DNA polymerase III subunits gamma and tau [Marinobacter sp. ELB17]
          Length = 622

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 79/228 (34%), Gaps = 29/228 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPRT E+  GQ      L   +E+ +     L H  LF G  G+GKTT+ +++AR L   
Sbjct: 11  RPRTFEDMVGQEHVLQALIHALESQR-----LHHAYLFTGTRGVGKTTIGRLLARCLNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR---DVLFIDEIHRLSIIVEEIL-----YPAMEDFQ 133
                  + AK   +      +++    D++ ID   R  +     L     Y       
Sbjct: 66  T-----GITAKPCGVCGSCREIQEGRFVDLIEIDAASRTGVDDMRELTDNVQYSPTRGRF 120

Query: 134 LDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
              ++ E             ++++        + ATT    L   +  R  +   L    
Sbjct: 121 KVYLIDEVHMLTNQSFNAFLKTLEEPPEHVKFLLATTDPQKLPVTVLSRC-LQFNLKRMT 179

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
            E +   +        +   + A   +A  + G+ R A  L  +   F
Sbjct: 180 PEHIAGHLNHVLTAEKIPFEEPALWLLARAADGSMRDALSLTDQAIAF 227


>gi|90411566|ref|ZP_01219576.1| DNA polymerase III subunits gamma and tau [Photobacterium profundum
           3TCK]
 gi|90327456|gb|EAS43809.1| DNA polymerase III subunits gamma and tau [Photobacterium profundum
           3TCK]
          Length = 759

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 49/265 (18%), Positives = 78/265 (29%), Gaps = 57/265 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN- 81
           RP    +  GQ    + L      A A        LF G  G+GKTT+A++ A+ L    
Sbjct: 11  RPHQFSDVVGQSHVLTALS----NALAHNRLHHAYLFSGTRGVGKTTIARIFAKGLNCEQ 66

Query: 82  -----------------------FRSTSGPVIAKAGDLAALLTNLEDRD------VLFID 112
                                            K  D   LL N++ +       V  ID
Sbjct: 67  GVTATPCGQCGTCKEIDEGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRFKVYLID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS      L   +E+                         I ATT    L   +  
Sbjct: 127 EVHMLSRHSFNALLKTLEE------------------PPEYVKFILATTDPQKLPVTILS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R  +   L   +   +++ +        +    +A   ++  + G+ R A  L     D 
Sbjct: 169 RC-LQFHLKHLDNNQIQSQLSNVLTQENVDFEPKALSLLSRAAEGSMRDALSL----TDQ 223

Query: 233 AEVAHAKTITREIADAALLRLAIDK 257
           A       +  +     L  L  D+
Sbjct: 224 AIALGNGQVHADSVSMMLGTLNTDQ 248


>gi|46198343|ref|YP_004010.1| cell division protein ftsH [Thermus thermophilus HB27]
 gi|46195965|gb|AAS80383.1| cell division protein ftsH [Thermus thermophilus HB27]
          Length = 618

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 56/247 (22%), Positives = 90/247 (36%), Gaps = 23/247 (9%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVARE 77
            T ++  G  EA   L   ++  K         AE    VL VGPPG GKT LA+ VA E
Sbjct: 162 TTFKDVAGHEEAKRELMEVVDFLKNPKKYLEIGAEIPKGVLLVGPPGTGKTLLARAVAGE 221

Query: 78  LGVNFRSTSGPVIA------KAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM 129
            GV F S S            A  + +L  +       ++FIDE+  +       +    
Sbjct: 222 AGVPFFSVSASEFMEMFVGVGASRVRSLFEDARRNAPSIIFIDELDSIGRKRGAGIGGGH 281

Query: 130 EDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           ++ +  L  ++ E               ++AAT R  +L   L    RF   + +    +
Sbjct: 282 DEREQTLNQILSEMDGFEKDTS----VIVLAATNRPDILDPALLRPGRFDRQVVVGLPSL 337

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           E+ K I+    +   +A   +A     +    +      L+      A     K I +E 
Sbjct: 338 EERKEILLVHMRGKPIAEDVDALELAHLTPGFSGADLRNLVNEAALLAARNGEKRIRKEH 397

Query: 246 ADAALLR 252
              AL +
Sbjct: 398 FLKALDK 404


>gi|307700496|ref|ZP_07637532.1| DNA polymerase III, subunit gamma and tau [Mobiluncus mulieris
           FB024-16]
 gi|307614303|gb|EFN93536.1| DNA polymerase III, subunit gamma and tau [Mobiluncus mulieris
           FB024-16]
          Length = 724

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 74/229 (32%), Gaps = 23/229 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T  E  GQ      L    EA+ A        LF GP G GKTT A+++AR
Sbjct: 3   ALYRRYRPDTFAEVIGQDHVTKAL----EASLANGRINHAYLFSGPRGCGKTTSARIMAR 58

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILY------PA 128
              +N      P      D    L        DV+ ID      +     L       P 
Sbjct: 59  --CLNCAEGPTPTPCGKCDSCRDLATGGSGSLDVVEIDAASNGGVDDARELRERATFAPV 116

Query: 129 MEDFQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            + F++ ++         G     + V+        I ATT    +   ++ R       
Sbjct: 117 RDRFKIFILDEAHMVTAAGFNALLKLVEEPPEHIKFIFATTDPDKVIGTIRSR-THHYPF 175

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
                E L+  +       G+ V D           G+ R +  +L ++
Sbjct: 176 RLVAPEILRDYLADLCHREGVTVEDGVLGLAVRAGGGSVRDSLSILDQL 224


>gi|319938041|ref|ZP_08012441.1| ATP-dependent Zn protease [Coprobacillus sp. 29_1]
 gi|319806947|gb|EFW03586.1| ATP-dependent Zn protease [Coprobacillus sp. 29_1]
          Length = 546

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 66/310 (21%), Positives = 112/310 (36%), Gaps = 37/310 (11%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKA------RAEALDH-VLFVGPPGLGKTTLAQVVARE 77
             + +  G  E   +L   I+  K           + H +LF+GPPG GKT LA+ VA E
Sbjct: 115 TRMSDVAGCSEVKEDLMEVIDFLKNPQKYNEMGAHIPHGILFMGPPGTGKTMLARAVAGE 174

Query: 78  LGVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
             V +   SG            A+  +L       +   ++FIDEI  +          A
Sbjct: 175 ANVKYIYCSGSEFVEKFSGVGAARVRELFEEAKKAQGPCIIFIDEIDAIGGARNLSGNDA 234

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
            +D  L+ ++ E           +   +IAAT R  +L   L    RF   I +     E
Sbjct: 235 EKDKTLNQLLVEMDGFEKS----NDIIVIAATNRKDMLDEALLRPGRFDRQILVGLPTKE 290

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +   I++  +K   +++  +           +      +L     FA   +   IT +  
Sbjct: 291 ERLEILKVHSKNKKVSLDLDLESISRKTPGFSGAQLAAVLNESALFAVRENKPFITNDFV 350

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
           D A+ R+    MG  + + +Y+ +                AG +     +E+      +Q
Sbjct: 351 DEAIDRVL---MGPSKKNRKYIDIERNIVAYHE-------AGHAVVGLTLENA-----MQ 395

Query: 307 QGFIQRTPRG 316
              I   PRG
Sbjct: 396 VEKITIIPRG 405


>gi|47207262|emb|CAF94026.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 832

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 61/154 (39%), Gaps = 18/154 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--V 108
           VL  GPPG GKT + + +A E+G +    +GP I           L  +      +   +
Sbjct: 413 VLLYGPPGTGKTMIGRAIANEVGAHMTVINGPEIMSKFYGETEARLRQIFAEASQKQPAI 472

Query: 109 LFIDEIHRLSIIV---EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
           +FIDE+  L       +  +   +    L LM G G    S ++ +     + AT R   
Sbjct: 473 IFIDELDALCPKREGAQNEVEKRVVASLLTLMDGIGSEGHSGRLLV-----LGATNRPHA 527

Query: 166 LTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAK 197
           L   L+   RF   + +      +   I+Q+  +
Sbjct: 528 LDPALRRPGRFDKELEVGVPSAAERADILQKQLR 561



 Score = 45.8 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 8/82 (9%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLED 105
           +   +    VL  GPPG  KT +A+ +A E G+NF +  GP +     G+    +  +  
Sbjct: 683 RMGIQPPKGVLLYGPPGCSKTMIAKALANESGLNFLAIKGPELLSKYVGESERAVREVFR 742

Query: 106 R------DVLFIDEIHRLSIIV 121
           +       ++F DEI  L+   
Sbjct: 743 KARAVAPSIVFFDEIDALASER 764


>gi|269976049|ref|ZP_06183053.1| DNA polymerase III subunit gamma/tau [Mobiluncus mulieris 28-1]
 gi|269935877|gb|EEZ92407.1| DNA polymerase III subunit gamma/tau [Mobiluncus mulieris 28-1]
          Length = 719

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 74/229 (32%), Gaps = 23/229 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T  E  GQ      L    EA+ A        LF GP G GKTT A+++AR
Sbjct: 4   ALYRRYRPDTFAEVIGQDHVTKAL----EASLANGRINHAYLFSGPRGCGKTTSARIMAR 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILY------PA 128
              +N      P      D    L        DV+ ID      +     L       P 
Sbjct: 60  --CLNCAEGPTPTPCGKCDSCRDLATGGSGSLDVVEIDAASNGGVDDARELRERATFAPV 117

Query: 129 MEDFQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            + F++ ++         G     + V+        I ATT    +   ++ R       
Sbjct: 118 RDRFKIFILDEAHMVTAAGFNALLKLVEEPPEHIKFIFATTDPDKVIGTIRSR-THHYPF 176

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
                E L+  +       G+ V D           G+ R +  +L ++
Sbjct: 177 RLVAPEILRDYLADLCHREGVTVEDGVLGLAVRAGGGSVRDSLSILDQL 225


>gi|229051606|ref|ZP_04195076.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus AH676]
 gi|228721717|gb|EEL73191.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus AH676]
          Length = 541

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 60/224 (26%), Gaps = 42/224 (18%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +S   A     RP +  +  GQ    +     I  A    +     L  GP G GKTT+A
Sbjct: 6   MSNYVALYRAYRPNSFNDLVGQDHIKTT----IMNAIKLEKVAHAYLLSGPRGTGKTTVA 61

Query: 72  QVVARELGV-------------------------NFRSTSGPVIAKAGDLAALLTNL--- 103
           +++ + +                           +             ++  +   +   
Sbjct: 62  KIIGKGVNCLAPLSNGEPCQKCANCSDINNNKFADILEFDAASNNGVEEIRQIRDQVHLA 121

Query: 104 ---EDRDVLFIDEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIA 158
                  V  IDE+H LS      L   +E+    +  ++      +  K  +SR     
Sbjct: 122 PVTGKYKVYIIDEVHMLSNSAFNALLKTLEEPPAHVIFILATTDPQKVPKTIISRCQQFE 181

Query: 159 ATTRVGLLTNPLQDRFGIPIRLNF--YEIEDLKTIVQRGAKLTG 200
                      + DR              E L  I Q       
Sbjct: 182 FRNIP---LQAMIDRLKFISHDQGIRITDEALHLISQLAEGGLR 222


>gi|268537162|ref|XP_002633717.1| Hypothetical protein CBG03401 [Caenorhabditis briggsae]
 gi|187036624|emb|CAP24301.1| hypothetical protein CBG_03401 [Caenorhabditis briggsae AF16]
          Length = 341

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 90/232 (38%), Gaps = 24/232 (10%)

Query: 28  EEFTGQVEACSNLK-----VFIEAAKARAEALD---HVLFVGPPGLGKTTLAQVVARELG 79
           +E  G  E  + LK         AA++ +  L     +L  GPPG GKT LA+ VAR  G
Sbjct: 82  DEIGGCEELVAELKDRIILPLRFAAQSGSNLLSPPRGILLYGPPGCGKTLLAKAVARAAG 141

Query: 80  VNFRSTSGPVI-----AKAGDLAALLTNLEDR---DVLFIDEIHRLSIIVEEILYPAMED 131
             F +    ++      ++  LAA + ++  +    ++FIDEI       +   + +   
Sbjct: 142 CRFINLQVSILTDKWYGESQKLAAAVFSVAAKFQPTIIFIDEIDSFLRDRQSHDHESTAM 201

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
            +   M      A S      +  ++ AT R   +   +  R     ++     +    I
Sbjct: 202 MKAQFMTLWDGFASSGD----QIIVMGATNRPRDVDAAILRRMTARFQVPVPTAKQRSQI 257

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           +    K   +    +++ ++   ++    ++G  L+ V   A +A AK    
Sbjct: 258 LNVILKNETI----QSSVDLGKIAQKAEGLSGSDLKEVCRLALLARAKATVA 305


>gi|332027262|gb|EGI67346.1| Protein YME1-like protein [Acromyrmex echinatior]
          Length = 749

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 55/251 (21%), Positives = 90/251 (35%), Gaps = 22/251 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  EA   L   +E  K          +    VL VGPPG GKT LA+ VA E 
Sbjct: 306 TFNDVKGVDEAKQELLNVVEFLKNPDKFSALGGKLPKGVLLVGPPGTGKTLLARAVAGEA 365

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F   +GP          A  +  L    +++   V+FIDEI  +       +     
Sbjct: 366 GVPFFHVAGPEFDEILVGQGARRVRDLFRAAKEKAPCVVFIDEIDSVGAKRTNSILHPYA 425

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
           +  ++ ++ E    R  +       ++ AT R   L   L    RF + I +N  +    
Sbjct: 426 NQTINQLLSEMDGFRQNEG----VIVLGATNRRKDLDKALMRPGRFDVEIYVNKPDYLGR 481

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           K I+            D         +  T      ++ +    A +  A  +T +  + 
Sbjct: 482 KEILDLYLARILTHEIDTDYLARCT-TGFTGADLENMVNQAALRAAIDEADYVTMKHLEH 540

Query: 249 ALLRLAIDKMG 259
           A  ++ +   G
Sbjct: 541 ARDKVLMGPEG 551


>gi|306817441|ref|ZP_07451186.1| possible DNA polymerase III subunits gamma and tau [Mobiluncus
           mulieris ATCC 35239]
 gi|304649882|gb|EFM47162.1| possible DNA polymerase III subunits gamma and tau [Mobiluncus
           mulieris ATCC 35239]
          Length = 725

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 74/229 (32%), Gaps = 23/229 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T  E  GQ      L    EA+ A        LF GP G GKTT A+++AR
Sbjct: 4   ALYRRYRPDTFAEVIGQDHVTKAL----EASLANGRINHAYLFSGPRGCGKTTSARIMAR 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILY------PA 128
              +N      P      D    L        DV+ ID      +     L       P 
Sbjct: 60  --CLNCAEGPTPTPCGKCDSCRDLATGGSGSLDVVEIDAASNGGVDDARELRERATFAPV 117

Query: 129 MEDFQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            + F++ ++         G     + V+        I ATT    +   ++ R       
Sbjct: 118 RDRFKIFILDEAHMVTAAGFNALLKLVEEPPEHIKFIFATTDPDKVIGTIRSR-THHYPF 176

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
                E L+  +       G+ V D           G+ R +  +L ++
Sbjct: 177 RLVAPEILRDYLADLCHREGVTVEDGVLGLAVRAGGGSVRDSLSILDQL 225


>gi|300118105|ref|ZP_07055853.1| hypothetical protein BCSJ1_09403 [Bacillus cereus SJ1]
 gi|298724416|gb|EFI65110.1| hypothetical protein BCSJ1_09403 [Bacillus cereus SJ1]
          Length = 536

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 60/224 (26%), Gaps = 42/224 (18%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           +S   A     RP +  +  GQ    +     I  A    +     L  GP G GKTT+A
Sbjct: 1   MSNYVALYRAYRPNSFNDLVGQDHIKTT----IMNAIKLEKVAHAYLLSGPRGTGKTTVA 56

Query: 72  QVVARELGV-------------------------NFRSTSGPVIAKAGDLAALLTNL--- 103
           +++ + +                           +             ++  +   +   
Sbjct: 57  KIIGKGVNCLAPLSNGEPCQKCANCSDINNNKFADILEFDAASNNGVEEIRQIRDQVHLA 116

Query: 104 ---EDRDVLFIDEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIA 158
                  V  IDE+H LS      L   +E+    +  ++      +  K  +SR     
Sbjct: 117 PVTGKYKVYIIDEVHMLSNSAFNALLKTLEEPPAHVIFILATTDPQKVPKTIISRCQQFE 176

Query: 159 ATTRVGLLTNPLQDRFGIPIRLNF--YEIEDLKTIVQRGAKLTG 200
                      + DR              E L  I Q       
Sbjct: 177 FRNIP---LQAMIDRLKFISHDQGIRITDEALHLISQLAEGGLR 217


>gi|154334731|ref|XP_001563612.1| peroxisome assembly protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 959

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 50/117 (42%), Gaps = 15/117 (12%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH-------VLFVGPPGLGKTTLAQ 72
           + L+P    +  G  EA   L+  I+      E  ++       VLF GPPG GKT LA+
Sbjct: 640 TKLQPVRWSDVGGLEEAKRELREMIQLPILHPEMFENGMKKRTGVLFYGPPGCGKTLLAK 699

Query: 73  VVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIV 121
            VA E+ +NF    GP +          ++  L     D    ++F DEI  L+   
Sbjct: 700 AVATEMNMNFMFVKGPELINQYVGESEKNIRLLFQRARDNSPCIVFFDEIDALAPAR 756


>gi|55980372|ref|YP_143669.1| cell division protein FtsH [Thermus thermophilus HB8]
 gi|55771785|dbj|BAD70226.1| cell division protein FtsH [Thermus thermophilus HB8]
          Length = 618

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 56/247 (22%), Positives = 90/247 (36%), Gaps = 23/247 (9%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVARE 77
            T ++  G  EA   L   ++  K         AE    VL VGPPG GKT LA+ VA E
Sbjct: 162 TTFKDVAGHEEAKRELMEVVDFLKNPKKYLEIGAEIPKGVLLVGPPGTGKTLLARAVAGE 221

Query: 78  LGVNFRSTSGPVIA------KAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM 129
            GV F S S            A  + +L  +       ++FIDE+  +       +    
Sbjct: 222 AGVPFFSVSASEFMEMFVGVGASRVRSLFEDARRNAPSIIFIDELDSIGRKRGAGIGGGH 281

Query: 130 EDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           ++ +  L  ++ E               ++AAT R  +L   L    RF   + +    +
Sbjct: 282 DEREQTLNQILSEMDGFEKDTS----VIVLAATNRPDILDPALLRPGRFDRQVVVGLPSL 337

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           E+ K I+    +   +A   +A     +    +      L+      A     K I +E 
Sbjct: 338 EERKEILLVHMRGKPIAEDVDALELAHLTPGFSGADLRNLVNEAALLAARNGEKRIRKEH 397

Query: 246 ADAALLR 252
              AL +
Sbjct: 398 FLKALDK 404


>gi|325184327|emb|CCA18818.1| ATPase AFG2 protein putative [Albugo laibachii Nc14]
          Length = 814

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 53/278 (19%), Positives = 98/278 (35%), Gaps = 39/278 (14%)

Query: 11  NVSQEDADISLLRPRTLEEFT------------GQVEACSNLKVFIEAAKARAEALDHV- 57
           ++S   A +   RP  L+E              GQ      LK  +E      EA   + 
Sbjct: 525 SLSDMQAALQKTRPSALQEIIVDVPKVYWHEIGGQETIKQQLKEVVEWPLTHPEAFTRMG 584

Query: 58  -------LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLAALLTNLEDR-- 106
                  L  GPPG  KT  A+ +A E  +NF +  GP +     G+    + +L  +  
Sbjct: 585 IRPPKGVLLYGPPGCSKTMTAKALATESCMNFLAVKGPELFSKWVGESEKAIQSLFKKAR 644

Query: 107 ----DVLFIDEIHRLS--IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAAT 160
                ++F DE   ++     +E     +    +  ++ E          L +  ++AAT
Sbjct: 645 AASPSIIFFDEFDAIAAQRSSQET-GSQVSSRVISQLLTELDGIE----PLQQVVIVAAT 699

Query: 161 TRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGT 218
            R  L+   L    R    + +    I+  ++I+   ++   +    +        +  +
Sbjct: 700 NRPDLIDKALMRPGRIDRVLYVGPPGIQARESILSIHSQCMPIDPDVDFMQLAVKTTNFS 759

Query: 219 PRIAGRLLRRVRDFA--EVAHAKTITREIADAALLRLA 254
                 L R     A  E  +AK +     D AL+++ 
Sbjct: 760 GAELAALCREAAMTALMENRNAKHVEMRHFDMALVKIE 797



 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/186 (22%), Positives = 73/186 (39%), Gaps = 20/186 (10%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEA-LDH---- 56
           +D++  +S    +E    S+ R  T  E  G  E    ++  +E++  + +  +DH    
Sbjct: 252 IDKKTKISIFFKEEHLVESVKR-STFAEIGGLEEEIRTIRQVMESSLYQPQFFMDHGLPP 310

Query: 57  ---VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR- 106
              +L  GPPG GK+ LA+ VA E   +F + +GP +           + A+        
Sbjct: 311 PKGILLFGPPGTGKSMLAKAVASEFKASFYTINGPELITDMIGENEARVRAIFKLALQNS 370

Query: 107 -DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
             ++FIDEI  L     +             ++             S+  ++AAT R   
Sbjct: 371 PSIIFIDEIDVLCPKRHDRSSDLERRLVATFLIAMDGMNSKEH---SQVMILAATNRPNA 427

Query: 166 LTNPLQ 171
           L   L+
Sbjct: 428 LDPALR 433


>gi|269928564|ref|YP_003320885.1| ATP-dependent metalloprotease FtsH [Sphaerobacter thermophilus DSM
           20745]
 gi|310943109|sp|D1C8C0|FTSH4_SPHTD RecName: Full=ATP-dependent zinc metalloprotease FtsH 4
 gi|269787921|gb|ACZ40063.1| ATP-dependent metalloprotease FtsH [Sphaerobacter thermophilus DSM
           20745]
          Length = 658

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 59/279 (21%), Positives = 102/279 (36%), Gaps = 26/279 (9%)

Query: 23  RPR-TLEEFTGQVEACSNLKVFIEAAK------ARAEALD-HVLFVGPPGLGKTTLAQVV 74
           RPR T  +  G+ EA + L   ++  +      A    L   +L VGPPG GKT LA+ V
Sbjct: 197 RPRVTFADVAGEEEAKAELSEVVDFLRNPMKYHAIGARLPRGILLVGPPGTGKTLLARAV 256

Query: 75  ARELGVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           A E GV F S S             ++  DL           ++F+DE+  +       L
Sbjct: 257 AGEAGVPFFSVSASEFVEMFVGVGASRVRDLFE-RAKASAPSIMFVDELDAVGRQRFAGL 315

Query: 126 YPAMEDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLN 181
               ++ +  L  ++ E       +       +IAAT R  +L   L    RF   + + 
Sbjct: 316 GGGNDEREQTLNQLLVEMDGFEPHQ----DVIVIAATNRPDVLDPALLRPGRFDRQVTVG 371

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
             +    + I++   +   +A   +     A     +      L+      A   + K +
Sbjct: 372 LPDRRGREAILRIHTRGIPVADDLDLEELAAATPGFSGADLANLVNEAALMAARKNKKIV 431

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV 280
            R   D AL ++ +       +      ++A +  G  V
Sbjct: 432 ERIDFDEALDKIVLGTERAMIMSEHDKRVVAYHEAGHAV 470


>gi|224131152|ref|XP_002328467.1| predicted protein [Populus trichocarpa]
 gi|222838182|gb|EEE76547.1| predicted protein [Populus trichocarpa]
          Length = 186

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 46/189 (24%), Positives = 75/189 (39%), Gaps = 25/189 (13%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78
           T ++F GQ      L+  +   K   E  D        VL  GPPG GKT LA+ +A E 
Sbjct: 1   TFDDFAGQEYIKRELQEIVRILKNDEEFQDKGIYCPKGVLLHGPPGTGKTLLAKAIAGEA 60

Query: 79  GVNFRSTSGP---------VIAKAGDLAALLTNLEDRDVLFIDEIHRL---SIIVEEILY 126
           G+ F + +G            ++  DL A   +     ++FIDEI  +       +    
Sbjct: 61  GLPFFAANGTDFVEMFVGVAASRVKDLFASARSFAP-SIIFIDEIDAIGSKRGGPDIGGG 119

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
            A  +  L  ++ E    +      S+  +I AT R+ +L   L    RF   +R+    
Sbjct: 120 GAEREQGLLQILTEMDGFKEFT---SQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPS 176

Query: 185 IEDLKTIVQ 193
            +    I++
Sbjct: 177 KDGRLAILK 185


>gi|163857866|ref|YP_001632164.1| DNA polymerase III subunits gamma and tau [Bordetella petrii DSM
           12804]
 gi|163261594|emb|CAP43896.1| DNA polymerase III subunit Tau [Bordetella petrii]
          Length = 736

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 56/290 (19%), Positives = 100/290 (34%), Gaps = 44/290 (15%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPR+ +   GQ      L   +++ +     L H  LF G  G+GKTTL++++A+ L   
Sbjct: 38  RPRSFDTLVGQDHVVRALTHALDSQR-----LHHAWLFTGTRGVGKTTLSRILAKSLNCE 92

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAMEDFQL 134
              TS P     G   A       R V +++        +  ++ ++E+ +Y        
Sbjct: 93  TGITSKP----CGQCRACTEIDAGRFVDYLELDAASNRGVEEMTQLLEQAVYAPGAGRYK 148

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             M+ E             ++++        I ATT    +   +  R  +   L     
Sbjct: 149 VYMIDEVHMLTGHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPP 207

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           + +   +Q       +A    A   IA  + G+ R A  L     D A    A  +T + 
Sbjct: 208 DAIVGHLQAVLGDEAVACELPALRLIAQAAGGSMRDALSL----TDQAIAYSAGNLTEDA 263

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDA 295
               L            +D R+L  +       P G  T    +++    
Sbjct: 264 VRGMLG----------TIDQRHLVRLLEAL---PAGDATGVLAVADELST 300


>gi|296417934|ref|XP_002838602.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295634552|emb|CAZ82793.1| unnamed protein product [Tuber melanosporum]
          Length = 747

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 57/245 (23%), Positives = 92/245 (37%), Gaps = 25/245 (10%)

Query: 9   SRNVSQEDADISLLRPR--TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VL 58
           S +  ++  D S   P+  +L++  G  +  ++L   I       E   H        VL
Sbjct: 161 SESAKRQKQDDSREPPKNISLKDIGGLEDVINDLLELIAMPLTHPEVYLHTGVQPPRGVL 220

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLF 110
             GPPG GKT LA  VA E+G+ F + S P I           L  L     ++   ++F
Sbjct: 221 LHGPPGCGKTMLANAVAGEIGLPFIAISAPSIVSGMSGESEKKLRELFEEAREKAPCLIF 280

Query: 111 IDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           +DEI  ++    E     ME   +  M+         K +     +I AT R   L   L
Sbjct: 281 MDEIDAITPKR-ESAQREMERRIVAQMLTCMDDLTLEKTSGKPVMIIGATNRPDSLDPAL 339

Query: 171 QD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
           +   RF   I LN  +    + I+    ++    +      +    ++ TP   G  L  
Sbjct: 340 RRAGRFDREICLNVPDEVGREKIL----RVLCQKLRLSGDFDFKRLAKTTPGFVGADLNA 395

Query: 229 VRDFA 233
           +   A
Sbjct: 396 LTAEA 400



 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 50/236 (21%), Positives = 81/236 (34%), Gaps = 15/236 (6%)

Query: 33  QVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK 92
           Q+     +K     A+    A   VL  GPPG GKT LA+ VA E   NF S  GP +  
Sbjct: 476 QMAIVQPIKRPELFARVGVTAPAGVLLWGPPGCGKTLLAKAVANESRANFISIRGPELLN 535

Query: 93  --AGDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSA 144
              G+    +  +  R       V+F DE+  L     + L  +       L+       
Sbjct: 536 KYVGESERAVRQVFTRARASIPCVIFFDELDALVPRRNDSLSESSSRVVNTLLTELDGLN 595

Query: 145 RSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLA 202
                +     +I AT R  ++   +    R   P+ ++     +   I++   K T L+
Sbjct: 596 -----DRKGIYVIGATNRPDVIDPAMLRPGRLDKPLFVDLPNTGERVEILKIITKNTPLS 650

Query: 203 VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKM 258
             D  A  +  R +         L R      + HA        +       ++ M
Sbjct: 651 NVDLGAIAVDNRCKNFSGADLAALVREAAVLALRHACFTDVAEVEEGKNADNLEVM 706


>gi|197294360|ref|YP_001798901.1| Putative IMP dehydrogenase/GMP reductase [Candidatus Phytoplasma
           australiense]
 gi|171853687|emb|CAM11570.1| Putative IMP dehydrogenase/GMP reductase [Candidatus Phytoplasma
           australiense]
          Length = 713

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 93/249 (37%), Gaps = 22/249 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDHV--------LFVGPPGLGKTTLAQVVARE 77
           T ++  G       L+  I   K     L +         L  GPPG GKT L + ++ E
Sbjct: 278 TFKDVYGMESEKEELEDLIFYFKESNNNLVNFDKIRPKGYLLYGPPGTGKTFLLKALSNE 337

Query: 78  LGVNF------RSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAM 129
               F      +     V     +   +    E  D+ ++FIDEI  ++   ++      
Sbjct: 338 CNAYFIEFEPSKLDKTYVGEGVEEWEKIWMEAERHDKTIIFIDEISGMANREDKNSNKTS 397

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
            +   +++       RS K    +  L+ AT  +  +   L+ RF   I+++  + E+++
Sbjct: 398 INIVNNILTKLDGFNRSDK----KIVLMGATNHLDQIDKALRSRFSKEIKIDLIKDEEIE 453

Query: 190 TIVQRGAKLTGLAVTDE-AACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             ++   +   ++        EIA R +G    + R L  + + A     K  T      
Sbjct: 454 GFLKFLIEPYQISYHTYLHLKEIANRCKGK-NYSNRDLTTIINDAYNKTNKFKTLNPKHE 512

Query: 249 ALLRLAIDK 257
            +L   +D+
Sbjct: 513 VMLPSDLDE 521


>gi|145257829|ref|XP_001401861.1| protein YME1 [Aspergillus niger CBS 513.88]
 gi|134074464|emb|CAK38759.1| unnamed protein product [Aspergillus niger]
          Length = 803

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 58/266 (21%), Positives = 97/266 (36%), Gaps = 29/266 (10%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGP 62
              S+       +R     +  G  EA   L+  +E        +    +    VL VGP
Sbjct: 323 PQNSEAQPQQQTVR---FSDVHGCDEAKEELQELVEFLTNPDRFSSLGGKLPKGVLLVGP 379

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIA------KAGDLAALLTNLEDRD--VLFIDEI 114
           PG GKT LA+ VA E GV F   SG           A  +  L T    +   ++FIDE+
Sbjct: 380 PGTGKTLLARAVAGEAGVPFFYMSGSEFDEVYVGVGAKRVRELFTQARSKSPAIIFIDEL 439

Query: 115 HRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-- 172
             +     E    A     L+ ++ E           S   +IAAT    LL   L    
Sbjct: 440 DAIGAKRNER-DAAYVKQTLNQLLTELDGFSQS----SGVIIIAATNYPQLLDKALTRPG 494

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           RF   + +   ++     I++   K   +++      ++ + +RGTP  +G  L  + + 
Sbjct: 495 RFDRKVTVGLPDVRGRMDILRHHMKDVQVSMD----VDVGVIARGTPGFSGADLENLVNQ 550

Query: 233 AEVAHAKTITREIADAALLRLAIDKM 258
           A +  ++    ++            M
Sbjct: 551 AAIYASRNKQTKVGPKDFDWAKDKIM 576


>gi|124485944|ref|YP_001030560.1| beta-lactamase domain-containing protein [Methanocorpusculum
           labreanum Z]
 gi|124363485|gb|ABN07293.1| AAA family ATPase, CDC48 subfamily [Methanocorpusculum labreanum Z]
          Length = 810

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 54/233 (23%), Positives = 81/233 (34%), Gaps = 31/233 (13%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLT 101
           K   E    VL  GPPG GKT +A+ VA E G  F + SGP I           L  +  
Sbjct: 231 KLGIEPPKGVLLYGPPGTGKTLIARAVANEAGAYFDTISGPEIISKYYGDSEEKLREIFE 290

Query: 102 NLEDR--DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA 159
             E+    ++FIDEI  ++   EE             +V +  S      +  +  +IAA
Sbjct: 291 KAEENAPSIIFIDEIDSIAPKREESKGEVERR-----VVAQLLSLMDGLKSRGKVIVIAA 345

Query: 160 TTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAK--------LTGLAVTDEAAC 209
           T     +   L+   RF   I +   + +  + I+Q  A+                    
Sbjct: 346 TNLPDSIDPALRRGGRFDREIEIGVPDKDGRREILQIHARNVPLSENVKLEKYANTTHGF 405

Query: 210 EIAMRSRGTPRIAGRLLRRV--------RDFAEVAHAKTITREIADAALLRLA 254
             A  +      A   LRR            AE      +T E  ++AL  + 
Sbjct: 406 VGADLALMVKEAAMHALRRAFPGMNPDEEISAEKLENLKVTAEDFESALKMVQ 458



 Score = 46.2 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 70/221 (31%), Gaps = 24/221 (10%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARELG 79
            +  G       L+  +E      E        +    L  GPPG GKT LA+ VA E  
Sbjct: 475 ADVGGLDSVKEELQQAVEWPLKYREVYKQFATKSPKGFLMFGPPGTGKTLLAKAVANESE 534

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILY-PAME 130
            NF S  GP +           +  +          ++F DEI  +            + 
Sbjct: 535 CNFISVKGPELMSKWVGESEKGIREIFRKARLASPSIIFFDEIDSIVPRRGSYEGSSHVT 594

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
           +  +   + E          L    +I AT R  ++   L    R    I +   + E  
Sbjct: 595 ESVVSQFLTELDGLE----ELKNVVVIGATNRPDMIDPALLRPGRLEQHIFVPPPDREGR 650

Query: 189 KTIVQ-RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
           K I+      ++ +   D    E+  ++ G        L R
Sbjct: 651 KQILDVYIKDISSMLAEDVNLDELVDKTEGFVGADIEALVR 691


>gi|296533588|ref|ZP_06896155.1| DNA polymerase III, gamma/tau subunit DnaX [Roseomonas cervicalis
           ATCC 49957]
 gi|296266081|gb|EFH12139.1| DNA polymerase III, gamma/tau subunit DnaX [Roseomonas cervicalis
           ATCC 49957]
          Length = 444

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 61/315 (19%), Positives = 105/315 (33%), Gaps = 37/315 (11%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
            +         RP+T  +  GQ      L+     A A+       +  G  G+GKTT A
Sbjct: 53  ATPYRVLARKYRPQTFADLIGQDALVRTLR----NAFAQNRVAHAFMLTGVRGVGKTTTA 108

Query: 72  QVVARELGV-NFRSTSGPVIAKAGDLAALLTNLEDR--DVLFID-----EIHRLSIIVEE 123
           +++AR L         GP     G  A     L DR  DVL +D      +  +  + E 
Sbjct: 109 RIIARALNCVGPDGNGGPTADPCGVCAECQAILADRHPDVLELDAASNNGVDNIRELREA 168

Query: 124 ILYPAMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRF 174
           + Y          ++ E             ++++    +   + ATT +  +   +  R 
Sbjct: 169 VRYRPARARFKVYILDEVHMLSTAAFNALLKTLEEPPPQVKFLFATTEIRKVPATILSRC 228

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
                L     E L+    R A+   +  ++ A   IA  + G+ R    LL +    A 
Sbjct: 229 Q-RFDLKRVPQEQLRAHFARIAEAEAVPASEAALAMIARAADGSVRDGLSLLDQAIAQAA 287

Query: 235 VAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGG--PVGIETISAGLSEP 292
            + A              L  D +G    D   L  +      G  P  +  + AG    
Sbjct: 288 GSAAGVEAD---------LVRDMLGL--ADRSLLFDLLEAAFRGDIPAMLAAMDAGH--E 334

Query: 293 RDAIEDLIEPYMIQQ 307
           R A   ++   +++ 
Sbjct: 335 RGADPGVVLADLLEL 349


>gi|294012157|ref|YP_003545617.1| DNA polymerase III gamma and tau subunit [Sphingobium japonicum
           UT26S]
 gi|292675487|dbj|BAI97005.1| DNA polymerase III gamma and tau subunit [Sphingobium japonicum
           UT26S]
          Length = 536

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 53/199 (26%), Gaps = 41/199 (20%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           +S +           RPR   E  GQ      L   I     R       L  G  G+GK
Sbjct: 1   MSDSPQPYRVLARKYRPRNFSELIGQDAMVQTLGNAIR----RGRLAHAFLMTGVRGVGK 56

Query: 68  TTLAQVVARELGV-----------------------------NFRSTSGPVIAKAGDLAA 98
           T+ A+++A+ L                               +             D+ +
Sbjct: 57  TSTARLIAKALNCVGPDGQGGPTIDPCGLCEPCMAIGEGRHIDVLEMDAASHTGVDDIRS 116

Query: 99  LLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKIN 150
           ++             +  IDE+H LS      L   +E+    +  ++      +     
Sbjct: 117 IIDIAGKGAYSARYKIYIIDEVHMLSRNAFNALLKTLEEPPEHVKFVLATTEVNKVPVTV 176

Query: 151 LSRFTLIAATTRVGLLTNP 169
           LSR            L   
Sbjct: 177 LSRCQRFDLRRIPAELLAA 195


>gi|194246446|ref|YP_002004085.1| DNA polymerase III [Candidatus Phytoplasma mali]
 gi|193806803|emb|CAP18230.1| DNA polymerase III [Candidatus Phytoplasma mali]
          Length = 580

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 47/245 (19%), Positives = 79/245 (32%), Gaps = 58/245 (23%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVAREL 78
              RP+  +   GQ      L+  I       + L H  LF G  G GKTTLA++ ++ +
Sbjct: 8   RKYRPKFFKNVVGQKIIIQTLRNAI-----IYKKLSHCYLFSGNKGTGKTTLAKIFSKTI 62

Query: 79  GV-----------------------NFRSTSGPVIAKAGDLAALLTNLEDRD------VL 109
                                    +     G       ++  L   +  +       + 
Sbjct: 63  NCLNNKDGDCCGYCEACNIIDKQNSDIIEIDGASYNGVEEIRDLKNKINYKTNFLKYKIY 122

Query: 110 FIDEIHRLSIIVEEILYPAMED--FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
            IDE+H L+      L   +E+    +  +     S +  +  LSR              
Sbjct: 123 IIDEVHVLTGNAFNALLKTLEEPPKHVIFIFATTESHKIPETILSRTQHFHLLNIQKQHI 182

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
                            IE L  IV     L  +++  EA  +IA  S+G+ R A  LL 
Sbjct: 183 -----------------IEKLTEIV----DLEKISIDKEALEKIAFYSQGSLRDALNLLD 221

Query: 228 RVRDF 232
           ++  +
Sbjct: 222 QISSY 226


>gi|125977992|ref|XP_001353029.1| GA13416 [Drosophila pseudoobscura pseudoobscura]
 gi|195172285|ref|XP_002026929.1| GL12737 [Drosophila persimilis]
 gi|54641780|gb|EAL30530.1| GA13416 [Drosophila pseudoobscura pseudoobscura]
 gi|194112697|gb|EDW34740.1| GL12737 [Drosophila persimilis]
          Length = 331

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 47/245 (19%), Positives = 81/245 (33%), Gaps = 38/245 (15%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M +    +          I   RP    E  G  +  + L VF     A      +++  
Sbjct: 1   MPEDPETVVAEKRTHLPWIEKYRPAKFNEIVGNEDTVARLSVFATQGNA-----PNIIIA 55

Query: 61  GPPGLGKTTLAQVVAR------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDR 106
           GPPG+GKTT  Q +AR            EL  +       V  K    A     L     
Sbjct: 56  GPPGVGKTTTIQCLARILLGDSYKEAVLELNASNERGIDVVRNKIKMFAQQKVTLPKGRH 115

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
            ++ +DE   ++   ++ L   ME +                 N +RF L   T+    +
Sbjct: 116 KIVILDEADSMTEGAQQALRRTMEIYS----------------NTTRFALACNTSE--KI 157

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
             P+Q R  +       + + L  +++  +K   L+   E    +   ++G  R     L
Sbjct: 158 IEPIQSRCAMLRFTKLSDAQVLAKLIE-VSKWESLSYDAEGLEAVVFTAQGDMRQGLNNL 216

Query: 227 RRVRD 231
           +    
Sbjct: 217 QATAQ 221


>gi|289706015|ref|ZP_06502388.1| DNA polymerase III, subunit gamma and tau [Micrococcus luteus SK58]
 gi|289557217|gb|EFD50535.1| DNA polymerase III, subunit gamma and tau [Micrococcus luteus SK58]
          Length = 1152

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 77/234 (32%), Gaps = 23/234 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP   E+  GQ      L+  +  AK R       LF GP G GKTT A+++AR
Sbjct: 4   ALYRRYRPDRFEDVIGQDHVTVPLRTAL--AKDRVN--HAYLFSGPRGCGKTTSARILAR 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEIL-----YPAM 129
              +N      P      D    L        DVL ID      +     L     +  +
Sbjct: 60  --CLNCAQGPTPTPCGECDSCRDLATGGPGSLDVLEIDAASHGGVEDARGLRERATFAPV 117

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            D    L++ E             + V+        I ATT    +   ++ R       
Sbjct: 118 RDRYKILIIDEAHMVTAAGFNALLKIVEEPPEHLKFIFATTEPEKVIGTIRSR-THHYPF 176

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
                E L   +++     G++V       +     G+ R    +L ++   A+
Sbjct: 177 RLVPPEPLIAYLEQLCAEEGVSVEKGVLPLVVRAGTGSVRDTLSVLDQLIAGAQ 230


>gi|322504519|emb|CAM37646.2| putative peroxisome assembly protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 959

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 50/117 (42%), Gaps = 15/117 (12%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH-------VLFVGPPGLGKTTLAQ 72
           + L+P    +  G  EA   L+  I+      E  ++       VLF GPPG GKT LA+
Sbjct: 640 TKLQPVRWSDVGGLEEAKRELREMIQLPILHPEMFENGMKKRTGVLFYGPPGCGKTLLAK 699

Query: 73  VVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIV 121
            VA E+ +NF    GP +          ++  L     D    ++F DEI  L+   
Sbjct: 700 AVATEMNMNFMFVKGPELINQYVGESEKNIRLLFQRARDNSPCIVFFDEIDALAPAR 756


>gi|213401803|ref|XP_002171674.1| ribosome biogenesis factor recycling AAA family ATPase
           [Schizosaccharomyces japonicus yFS275]
 gi|211999721|gb|EEB05381.1| ribosome biogenesis factor recycling AAA family ATPase
           [Schizosaccharomyces japonicus yFS275]
          Length = 807

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 46/197 (23%), Positives = 71/197 (36%), Gaps = 24/197 (12%)

Query: 26  TLEEFTGQVEACSNLKVFIE--------AAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           T  +  GQ E    LK  IE          K        +L  GPPG  KT  A+ +A E
Sbjct: 545 TWSQIGGQEEVKQKLKEAIEWPLTHPETFVKLGVTPPKGILLYGPPGCSKTLTAKAIATE 604

Query: 78  LGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAM 129
            G NF +  GP + +   G+    +  +  +       V+F DEI  L+           
Sbjct: 605 TGFNFIAVKGPELLQKYVGESERAVRQIFHKARQASPSVIFFDEIDALTTER------GG 658

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            D   D +V    +      +L    ++AAT R  ++   L    R    + +   + E 
Sbjct: 659 HDNSNDRVVAALLNEMDGIESLKNVLVLAATNRPDVIDPALMRPGRLDRLLYVGPPDAEA 718

Query: 188 LKTIVQRGAKLTGLAVT 204
              I++  AK    A  
Sbjct: 719 RLAILRIQAKRMTFASD 735



 Score = 53.2 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 80/226 (35%), Gaps = 25/226 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
           T ++  G  +  + L+  +E      E  +H        +L  GPPG GKT + + VA E
Sbjct: 253 TFDKIGGLQKQIAILRDAVELPLLHPELFEHFHITPPRGILLYGPPGTGKTMILRAVAAE 312

Query: 78  LGVNFRSTSGPVIAKA------GDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAM 129
                 +  GP I           L  +  +       ++F+DEI  L       +  A 
Sbjct: 313 TSAQVFTVDGPSIVGKYLGETESRLRKIFEDARANQPSIIFVDEIDALVPKRTGDVSEAE 372

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                  +      A +      R  ++AAT R   +   L+   R    I +   + E 
Sbjct: 373 SRTVATFLTLLDGMANAG-----RVAVVAATNRPNSIDEALRRPGRLEKEIEIGIPDKEA 427

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
              I++        +++D    ++A RS     +   L   VR+ A
Sbjct: 428 RLDILKLLFHEVPNSLSDGDIEDLAARS--HAYVGADLAAVVREAA 471


>gi|195377543|ref|XP_002047548.1| GJ11872 [Drosophila virilis]
 gi|194154706|gb|EDW69890.1| GJ11872 [Drosophila virilis]
          Length = 1014

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 40/242 (16%), Positives = 79/242 (32%), Gaps = 37/242 (15%)

Query: 32  GQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           G  +    +  FI  +  +      +L F GPPG+GKT++A+ +AR L   +   S   +
Sbjct: 525 GMEDIKKRILEFIAVSSLKGTTQGKILCFHGPPGVGKTSIAKSIARALNREYFRFSVGGM 584

Query: 91  AKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE--------EILY 126
               ++                        +  ++ IDE+ ++    +        E+L 
Sbjct: 585 TDVAEIKGHRRTYVGAMPGKLIQCLKKTKTENPLVLIDEVDKIGKGYQGDPSSALLELLD 644

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           P      LD           V ++LSR   I     +  +  PL+DR  +     +   E
Sbjct: 645 PEQNSNFLD-------HYLDVPVDLSRVLFICTANVIDTIPEPLRDRMELIEMSGYVAEE 697

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
            +       A+   +            +   T      L+R     + V + +    ++ 
Sbjct: 698 KVA-----IARQYLIPQAMNDCGLTEKQINITEDALNMLIRSYCRESGVRNLQKQIEKVI 752

Query: 247 DA 248
             
Sbjct: 753 RK 754


>gi|163789946|ref|ZP_02184382.1| DNA-directed DNA polymerase III, gamma/tau subunit [Carnobacterium
           sp. AT7]
 gi|159874886|gb|EDP68954.1| DNA-directed DNA polymerase III, gamma/tau subunit [Carnobacterium
           sp. AT7]
          Length = 606

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 56/305 (18%), Positives = 106/305 (34%), Gaps = 39/305 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  ++  GQ      L+     A A+ +     LF GP G GKT+ A++ A+ +    
Sbjct: 11  RPQRFQDIAGQKAITQTLR----NALAQEKTSHAYLFTGPRGTGKTSAAKIFAKAINCPN 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P      +    +T  +  DV+ ID      +  +  I ++  Y          +
Sbjct: 67  LKDGEPCNEC--ETCHSITQGQLNDVIEIDAASNNGVEEIRDIRDKAKYAPTSADYKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQD---RFGIPIRLNFYEI 185
           + E             ++++        I ATT    +   +     RF           
Sbjct: 125 IDEVHMLTTGAFNALLKTLEEPPKNVVFILATTEPHKIPLTIISRTQRFDFKRISVRDSC 184

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           E +  I+        +   +EA   IA  + G  R A  +L    D A      ++T E 
Sbjct: 185 ERMAYIL----NQEKITYQEEALTVIARAAEGGMRDALSIL----DQAISYGDDSVTAEN 236

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           A +    L   ++  D  D      I ++      G+  + + L+E +DA   + +  + 
Sbjct: 237 AMSVTGSLTQ-ELVLDYFD-----AIIQHKTEK--GLSLLQSILAEGKDASRFVEDLILF 288

Query: 306 QQGFI 310
            +  +
Sbjct: 289 SRDLL 293


>gi|289579225|ref|YP_003477852.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter italicus
           Ab9]
 gi|297545405|ref|YP_003677707.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|289528938|gb|ADD03290.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter italicus
           Ab9]
 gi|296843180|gb|ADH61696.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 611

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 63/246 (25%), Positives = 91/246 (36%), Gaps = 23/246 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  E    L+  +E  K   + LD        VL VGPPG GKT LA+ VA E 
Sbjct: 159 TFNDVAGADEEKEELQEIVEFLKYPKKFLDLGARIPKGVLLVGPPGTGKTLLAKAVAGEA 218

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG       V   A  +  L    +     ++FIDEI  +       L    +
Sbjct: 219 GVPFFSISGSDFVEMFVGVGAARVRDLFEQAKKNAPCIVFIDEIDAVGRQRGAGLGGGHD 278

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E       +       +IAAT R  +L   L    RF   I +   +I+
Sbjct: 279 EREQTLNQLLVEMDGFSVNEG----IIVIAATNRPDILDPALLRPGRFDRHITVGIPDIK 334

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++  A+   LA               T      L+      A     K IT    
Sbjct: 335 GREEILKIHARNKPLAPDVSLQVLARRTPGFTGADLENLMNEAALLAARRGLKQITMAEL 394

Query: 247 DAALLR 252
           + A+ R
Sbjct: 395 EEAITR 400


>gi|308069462|ref|YP_003871067.1| cell division protein, ftsH-like protein [Paenibacillus polymyxa
           E681]
 gi|305858741|gb|ADM70529.1| Cell division protein, ftsH-like protein [Paenibacillus polymyxa
           E681]
          Length = 500

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 58/267 (21%), Positives = 95/267 (35%), Gaps = 36/267 (13%)

Query: 26  TLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T EE  GQ  A   L+  +       E +K     L  VL  GPPG GKT +A+  A   
Sbjct: 69  TFEEIGGQESAKQELREALDFLNRHDEISKFGIRPLKGVLLTGPPGTGKTLMAKAAAHYT 128

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNL--------EDRDVLFIDEIHRLSIIV--- 121
              F + SG           AG +  L            ++  ++FIDEI  +       
Sbjct: 129 NSVFVAASGSEFVEMYVGVGAGRVRELFREARTRAAKEKKENAIIFIDEIDVIGGKREGG 188

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIR 179
           ++  Y    +  L  M G          +  R  +IAAT R  +L + L    RF   I+
Sbjct: 189 QQREYDQTLNQLLTEMDG------IYSADTPRILIIAATNRKEMLDSALTRPGRFDRHIQ 242

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           ++  + +    I++  A    +         +   +  +   +G  L  V + A +   +
Sbjct: 243 VDLPDKKGRLHILKIHATNKPIQEDAN----LDKIAEESYGFSGAQLESVMNEAAIYAMR 298

Query: 240 TITREIADAALLRLAIDKMGFDQLDLR 266
              + IA   L       M  ++ D  
Sbjct: 299 QDQKMIAQKHLSMAIDKVMMGEKTDRE 325


>gi|307206656|gb|EFN84628.1| Spastin [Harpegnathos saltator]
          Length = 578

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 47/208 (22%), Positives = 77/208 (37%), Gaps = 18/208 (8%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-------LFVGPPGLGKTTLAQVVAR 76
           P   E+  GQ  A   L+  +     R E    +       L  GPPG GKT LA+ VA 
Sbjct: 300 PVQWEDIAGQETAKQALQEMVILPSLRPELFTGLRAPARGLLLFGPPGNGKTLLARAVAT 359

Query: 77  ELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPA 128
           +    F S S   +           + AL     +    V+FIDE+  L    ++  + A
Sbjct: 360 QCNATFFSISAASLTSKYVGEGEKLVRALFAIARELQPSVIFIDEVDSLLSERKDNEHEA 419

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
               + + +V              R  ++AAT R   L      RF   + +   +++  
Sbjct: 420 SRRLKTEFLVEFDG---LPCNPEERVLVMAATNRPQELDEAALRRFTKRVYVTLPDLQTR 476

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSR 216
             ++QR        +T E   E+A+ + 
Sbjct: 477 IVLLQRLLAKHNDPLTAEELNEMAVMTE 504


>gi|256545280|ref|ZP_05472645.1| DNA polymerase III, gamma and tau subunits [Anaerococcus vaginalis
           ATCC 51170]
 gi|256399107|gb|EEU12719.1| DNA polymerase III, gamma and tau subunits [Anaerococcus vaginalis
           ATCC 51170]
          Length = 583

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 77/223 (34%), Gaps = 25/223 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+   +  GQ    + LK  +++ +         LF G  G GKTT A++ A+ +    
Sbjct: 10  RPQKFSDVLGQDRVVNVLKNQVKSGQISHAY----LFAGERGCGKTTCAKIFAKAINCLN 65

Query: 83  RSTSGP--VIAKAGDLAALLTNLEDRDVLFIDEIHR-----LSIIVEEILYPAMEDFQLD 135
                P         +    T     DV+ +D         +  + E ++YP        
Sbjct: 66  PIDLSPCGECENCKSIEEESTM----DVVEMDAASNRRIDDIRNLKETVVYPPNNLKYKV 121

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             + ++   S    I ATT +  +   +  R       N    E
Sbjct: 122 YIIDEAHMITREAFNALLKIMEEPPSHLVFILATTEIEKIPKTILSRVQ-KFEFNKIGRE 180

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           D+   +        + +  EA   I  +++G  R A  +L +V
Sbjct: 181 DIIKQIDIILSDRNITIEQEAKELIVKKAKGAMRDALSILDQV 223


>gi|198449322|ref|XP_002136871.1| GA26898 [Drosophila pseudoobscura pseudoobscura]
 gi|198130555|gb|EDY67429.1| GA26898 [Drosophila pseudoobscura pseudoobscura]
          Length = 1007

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 41/242 (16%), Positives = 79/242 (32%), Gaps = 37/242 (15%)

Query: 32  GQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           G  +    +  FI  +         +L F GPPG+GKT++A+ +AR L   +   S   +
Sbjct: 510 GMEDIKKRILEFIAVSALNGTTQGKILCFHGPPGVGKTSIAKSIARALNREYFRFSVGGM 569

Query: 91  AKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE--------EILY 126
               ++                        +  ++ IDE+ ++    +        E+L 
Sbjct: 570 TDVAEIKGHRRTYVGAMPGKLIQCLKKTKTENPLVLIDEVDKIGKGYQGDPSSALLELLD 629

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           P      LD           V I+LSR   I     +  +  PL+DR  +     +   E
Sbjct: 630 PEQNANFLD-------HYLDVPIDLSRVLFICTANVIDTIPEPLRDRMELIQMSGYVAEE 682

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
            +       A+   +  +             T +    L+R     + V + +    ++ 
Sbjct: 683 KVA-----IARQYLIPKSMNDCGLTDEHISITEKALNMLIRNYCRESGVRNLQKQIEKVM 737

Query: 247 DA 248
             
Sbjct: 738 RK 739


>gi|288940170|ref|YP_003442410.1| DNA polymerase III subunits gamma and tau [Allochromatium vinosum
           DSM 180]
 gi|288895542|gb|ADC61378.1| DNA polymerase III, subunits gamma and tau [Allochromatium vinosum
           DSM 180]
          Length = 549

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 65/310 (20%), Positives = 108/310 (34%), Gaps = 39/310 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPR+ ++  GQ          +  A  R +     LF G  G+GKTTLA+++++ L    
Sbjct: 11  RPRSFDDMVGQQHVV----RALSNALDRDQLHHAYLFTGTRGVGKTTLARILSKALNCEQ 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILY------PAMEDFQL 134
              S P     G  +A       R  D+L +D   R  +     L       PA   F++
Sbjct: 67  GVGSHP----CGVCSACREIDSGRFVDLLEVDAASRTKVDQTRELLENVPYAPARARFKV 122

Query: 135 DLMVGEGPSARSVKIN---------LSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             ++ E     S   N               + ATT    +   +  R            
Sbjct: 123 -YLIDEVHMFSSHSFNALLKTLEEPPPHVKFLLATTDPQKIPVTVLSRCLQLNLRRLLPG 181

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           E +   +    +  GLA    A   +A  + G+ R A  LL +   F           E 
Sbjct: 182 E-IADRLTYVLEHEGLAFEPAALPLLARAADGSLRDALSLLDQAIAF-----GGGRVIES 235

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVG-IETISAGLSEPRDAIEDLIEPYM 304
              A+L      +  D      L  +A   G   +G +E ++A   +  + + +LI   +
Sbjct: 236 ETRAMLGTVSGDLALD-----ILDALADGDGAAVLGSVERVAAMTPDFAELLRELI-GLL 289

Query: 305 IQQGFIQRTP 314
            +   IQ+ P
Sbjct: 290 HRLALIQQVP 299


>gi|255714923|ref|XP_002553743.1| KLTH0E06006p [Lachancea thermotolerans]
 gi|238935125|emb|CAR23306.1| KLTH0E06006p [Lachancea thermotolerans]
          Length = 819

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 52/245 (21%), Positives = 86/245 (35%), Gaps = 16/245 (6%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARA--EALDHVLFVGPPGLGKTTLAQVVARELGVNFRST 85
           ++   Q+     L +      A    E    VL  GPPG GKT++A  +A EL V F S 
Sbjct: 208 DDVVAQLMELIGLPILHPEIFASTGVEPPRGVLLHGPPGCGKTSIANALAGELQVPFISI 267

Query: 86  SGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           S P +           +  L    +     ++F DEI  ++   +      ME   +  +
Sbjct: 268 SAPSVVSGMSGESEKKIRDLFEEAKSLAPCLVFFDEIDAITPKRDGGAQREMERRIVAQL 327

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRG 195
           +         K       +I AT R   L   L+   RF   I LN         I+++ 
Sbjct: 328 LTSMDELSFEKTGGKPVIIIGATNRPDSLDAALRRAGRFDREICLNVPNEISRLHILKKM 387

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255
           +    +      + +    ++ TP   G  L+ +   A     K I +  A  A   + +
Sbjct: 388 SSTLKID----GSIDFLKLAKLTPGFVGADLKALSTAAGTCAIKRIFQSYASLAPTSMEV 443

Query: 256 DKMGF 260
           D    
Sbjct: 444 DDETL 448



 Score = 47.4 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/179 (22%), Positives = 67/179 (37%), Gaps = 15/179 (8%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLED 105
           K    A   VL  GPPG GKT LA+ VA E   NF S  GP +     G+    +  +  
Sbjct: 550 KVGISAPAGVLLWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESERAIRQVFS 609

Query: 106 RD------VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA 159
           R       V+F DE+  L     +          ++ ++ E       +       +I A
Sbjct: 610 RARASVPCVIFFDELDALVPRR-DASLSESSSRVVNTLLTELDGLNDRRG----IFVIGA 664

Query: 160 TTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSR 216
           T R  ++   +    R    + +     E+   I++  A+  G  ++ +   E  +R  
Sbjct: 665 TNRPDMIDAAMLRPGRLDKTLFIELPNFEEKLDIIKTLARTNGTPLSSDVDFEAIIRDE 723


>gi|197294568|ref|YP_001799109.1| Putative peptidase M41 cell division protein, fragment [Candidatus
            Phytoplasma australiense]
 gi|171853895|emb|CAM11857.1| Putative peptidase M41 cell division protein, fragment [Candidatus
            Phytoplasma australiense]
          Length = 2026

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 42/238 (17%), Positives = 78/238 (32%), Gaps = 27/238 (11%)

Query: 26   TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
            TL E  G  E    LK F+   K   +            VL  GPPG GKT LA+ +A+E
Sbjct: 1275 TLGEVIGFREEIEQLKDFLSYLKNPNKYNKIGVRKPPKGVLLYGPPGTGKTFLAKAIAKE 1334

Query: 78   LGVNFRSTSGPVIAK------AGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM 129
              + F + +    +K         +  +      +   ++FIDE   +            
Sbjct: 1335 ANLPFFALNSSDFSKSYLGEGPKLINDVFEEARKKSPSIIFIDECESVFRSRISNKSSHS 1394

Query: 130  -EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
              D  +   + +    ++         L+ AT     + + +  RF   I+++   + D 
Sbjct: 1395 DHDNMIAAFLTQTEGFKTD--PKHPVFLMGATNYKDEIDSAILSRFNRHIKVDLLNVSDR 1452

Query: 189  KTIVQRGAKLTGLAVTDEAA--------CEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
               ++  A    + +              +    +  T R    +L +    A   H 
Sbjct: 1453 IKFIKTLANSYKIDIRAYQYLNKVIEITEKFGDDTLKTQRKLIDILDQAAIKAIQKHD 1510


>gi|170595872|ref|XP_001902553.1| transitional endoplasmic reticulum ATPase TER94 [Brugia malayi]
 gi|158589713|gb|EDP28598.1| transitional endoplasmic reticulum ATPase TER94, putative [Brugia
           malayi]
          Length = 351

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 50/258 (19%), Positives = 88/258 (34%), Gaps = 21/258 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
           T ++  G       L+  ++      +            VLF GPPG GKT LA+ +A E
Sbjct: 20  TWDDIGGLQNVKRELQELVQYPVEHPDKYLKFGMQPSRGVLFYGPPGCGKTLLAKAIAHE 79

Query: 78  LGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAM 129
              NF S  GP +     G+  A + ++ D+       VLF DE+  ++      +  A 
Sbjct: 80  CQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCVLFFDELDSVAKARGGSIGDA- 138

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                D ++ +  +      N     +I AT R  ++ + +    R    I +   +   
Sbjct: 139 -GGAADRVINQILTEMDGMSNKKNVFIIGATNRPDIIDSAILRPGRLDQLIYIPLPDEAS 197

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA-EVAHAKTITREIA 246
              I +   + T +A   +           +      + +R    A   +  K I  E  
Sbjct: 198 RLQIFKANLRKTPIATDVDLTYLAKTTVGFSGADLTEICQRACKLAIRESIEKEIRHEKE 257

Query: 247 DAALLRLAIDKMGFDQLD 264
                    + M  D  D
Sbjct: 258 KQERRARGEELMDDDVYD 275


>gi|146163969|ref|XP_001012750.2| ATPase, AAA family protein [Tetrahymena thermophila]
 gi|146145857|gb|EAR92505.2| ATPase, AAA family protein [Tetrahymena thermophila SB210]
          Length = 719

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 42/178 (23%), Positives = 73/178 (41%), Gaps = 18/178 (10%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--------AKAGDLAALLTNLE 104
               +L  GPPG GKT + + +A + G  F S S   +         K   +   L  + 
Sbjct: 467 PPKGLLLFGPPGTGKTMIGKAIANQSGSTFFSISASSLTSKYIGEGEKMVKILFKLAEMR 526

Query: 105 DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV-GEGPSARSVKINLSRFTLIAATTRV 163
              V+FIDEI  L    +E    A    + + +V  EG ++R       R  LI AT R 
Sbjct: 527 QPSVIFIDEIDSLLCARQENENEASRRIKTEFLVQMEGATSREEV----RLLLIGATNRP 582

Query: 164 GLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR-----GAKLTGLAVTDEAACEIAMRSR 216
             L + ++ RF   + +    +   + +++R      AK     ++D+   E+   ++
Sbjct: 583 QELDDAVRRRFVKKLYIPLPNMVAREQLIRRVIERESAKGNAFDMSDQDILEVVQATK 640


>gi|125625234|ref|YP_001033717.1| DNA polymerase III subunits gamma and tau [Lactococcus lactis
           subsp. cremoris MG1363]
 gi|124494042|emb|CAL99042.1| DNA polymerase III subunits gamma / tau [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|300072044|gb|ADJ61444.1| DNA polymerase III subunits gamma and tau [Lactococcus lactis
           subsp. cremoris NZ9000]
          Length = 553

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 51/299 (17%), Positives = 89/299 (29%), Gaps = 57/299 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     R +  +E  GQ    + LK  I         + H  LF GP G GKT+ A++ A
Sbjct: 5   ALYRKYRSQRFDEMVGQEVVATTLKNAI-----VNHQISHAYLFSGPRGTGKTSAAKIFA 59

Query: 76  RELGVNFRST------------------------SGPVIAKAGDLAALLTN----LEDRD 107
           + +    +                                   ++  +            
Sbjct: 60  KAINCPNQVDGEPCNNCFICDSITKGSLDDVIELDAASNNGVDEIREIRDKSTYAASQAT 119

Query: 108 --VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
             V  IDE+H LS      L   +E+                         + ATT +  
Sbjct: 120 YKVYIIDEVHMLSTGAFNALLKTLEEPT------------------ENVVFVLATTELQK 161

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           +   +  R       +    + ++T + +     G+   D+A   IA  + G  R A  L
Sbjct: 162 IPATIISRVQRFAFKSITTAD-IRTYLGKILGDEGVEFEDKALDVIAKAAEGGMRDALSL 220

Query: 226 LRRVRDFAEVA-HAKTITREIADAALLRLAIDKMGFDQLDL-RYLTMIARNFGGGPVGI 282
           L +   F+      +         A   L    +   + D  + LT + + F  G   +
Sbjct: 221 LDQALSFSAGKLEEEDALLVTGSIAADALVSYVLALFENDESKALTELDKIFAEGKNML 279


>gi|13242694|ref|NP_077709.1| EsV-1-224 [Ectocarpus siliculosus virus 1]
 gi|13177494|gb|AAK14638.1|AF204951_223 EsV-1-224 [Ectocarpus siliculosus virus 1]
          Length = 324

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 77/214 (35%), Gaps = 21/214 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP  L++ +G       L+ F        E   +++  GPPG GKT+    +A+      
Sbjct: 9   RPTRLQDVSGNDHVIRALQSFTSM-----ETTPNMILHGPPGSGKTSSIISMAKSFFGRT 63

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI--IVEEILYPAMEDFQLDLMVGE 140
             +   +   AGD  ++ T          D+IH  +    V +    A++   LD   G 
Sbjct: 64  NISIMTLELNAGDSRSIGTMR--------DQIHFFTRCSSVTDRSTNALKLVILDEADGL 115

Query: 141 GPSARSVKINL-----SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
              A+    +L      R         +  L++ L+ R           ++   T ++  
Sbjct: 116 TSCAQRALRHLIETTSGRARFCLCCNYISRLSSGLRSRCTSFSFSGIGNVQLAHT-LREV 174

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           A+   L +++E    +     G  R    LL+ +
Sbjct: 175 ARKEDLEISEEGLNAVVKVCAGDARQGINLLQSL 208


>gi|20091847|ref|NP_617922.1| AAA family ATPase [Methanosarcina acetivorans C2A]
 gi|19917038|gb|AAM06402.1| ATPase, AAA family [Methanosarcina acetivorans C2A]
          Length = 372

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 53/255 (20%), Positives = 95/255 (37%), Gaps = 22/255 (8%)

Query: 27  LEEFTGQVEACSN---LKVFIEAAKARAE-ALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
            E+  GQ  A      ++ F+E  +   + A  ++LF GP G GKT LA+ +A +  V  
Sbjct: 122 FEDVIGQELAKQKCRLIERFLEEPERFGKWAPRNILFFGPSGTGKTMLAKALANKTDVPI 181

Query: 83  RSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEIH--RLSIIVEEILYPAMEDF 132
                  +     GD A  +  L DR       ++FIDE+    L    +E+        
Sbjct: 182 IPVKATQLIGEYVGDGARQIHQLYDRAEEMSPCIIFIDELDAIALDRRFQEL------RG 235

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            +  +V    +     +       I +T RV  L + ++ RF   I       E++  I+
Sbjct: 236 DVSEIVNALLTEMDGIVERDGVCTICSTNRVNALDSAVRSRFEEEIEFVLPGEEEIIHIL 295

Query: 193 QRGAKL--TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           +   K     +   D  A     +      I  ++L+     A +   +++T +  + A 
Sbjct: 296 ESNVKTFPLQVEKYDFQALGKKAKGLSGRDIVEKILKTALHQAIIDDRESVTGKDFEKAF 355

Query: 251 LRLAIDKMGFDQLDL 265
            +L       D   L
Sbjct: 356 AKLGRKDFTPDPTHL 370


>gi|300715625|ref|YP_003740428.1| DNA polymerase III subunit tau [Erwinia billingiae Eb661]
 gi|299061461|emb|CAX58575.1| DNA polymerase III subunit tau [Erwinia billingiae Eb661]
          Length = 644

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 54/306 (17%), Positives = 104/306 (33%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+   +  GQ    + L        +        LF G  G+GKTT+A+++A+  G+N 
Sbjct: 11  RPQAFTDVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTTIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGQCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++        + ATT    L   +  R  +   L   ++E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  +Q   +   +     +   +A  + G+ R A  L     D A       +T    +A
Sbjct: 184 RGQLQHVLQEEKIEAEPRSLQLLARAADGSMRDALSL----ADQAIAMGQGQVTTVTVNA 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L       D+  L  +  +    G   + +   +A      +A+   +   + +  
Sbjct: 240 MLGTLD------DEQPLALIEALVNAEGEQVMSLLNQAASRGVEWEALLVEMLTLLHRVA 293

Query: 309 FIQRTP 314
            IQ  P
Sbjct: 294 MIQLLP 299


>gi|197294814|ref|YP_001799355.1| Putative IMP dehydrogenase/GMP reductase [Candidatus Phytoplasma
           australiense]
 gi|171854141|emb|CAM12133.1| Putative IMP dehydrogenase/GMP reductase [Candidatus Phytoplasma
           australiense]
          Length = 705

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 93/249 (37%), Gaps = 22/249 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDHV--------LFVGPPGLGKTTLAQVVARE 77
           T ++  G       L+  I   K     L +         L  GPPG GKT L + ++ E
Sbjct: 278 TFKDVYGMESEKEELEDLIFYFKESNNNLVNFDKIRPKGYLLYGPPGTGKTFLLKALSNE 337

Query: 78  LGVNF------RSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAM 129
               F      +     V     +   +    E  D+ ++FIDEI  ++   ++      
Sbjct: 338 CNAYFIEFEPSKLDKTYVGEGVEEWEKIWMEAERHDKTIIFIDEISGMANREDKNSNKTS 397

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
            +   +++       RS K    +  L+ AT  +  +   L+ RF   I+++  + E+++
Sbjct: 398 INIVNNILTKLDGFNRSDK----KIVLMGATNHLDQIDKALRSRFSKEIKIDLIKDEEIE 453

Query: 190 TIVQRGAKLTGLAVTDE-AACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             ++   +   ++        EIA R +G    + R L  + + A     K  T      
Sbjct: 454 GFLKFLIEPYQISYHTYLHLKEIANRCKGK-NYSNRDLTTIINDAYNKTNKFKTLNPNHE 512

Query: 249 ALLRLAIDK 257
            +L   +D+
Sbjct: 513 VMLPSDLDE 521


>gi|297742262|emb|CBI34411.3| unnamed protein product [Vitis vinifera]
          Length = 836

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 51/286 (17%), Positives = 95/286 (33%), Gaps = 41/286 (14%)

Query: 9   SRNVSQEDADISLLRPR---------TLEEFTGQVEACSNLKVFIEAAKARAE------- 52
           +  V  ++     +RP          T  +     E   +L+  +     R +       
Sbjct: 497 APEVPPDNEFEKRIRPEVIPASEIGVTFADIGAMDEIKESLQELVMLPLRRPDLFEGGLL 556

Query: 53  -ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLED 105
                +L  GPPG GKT LA+ +A E G +F + S   I          ++ AL T    
Sbjct: 557 KPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAK 616

Query: 106 --RDVLFIDEIH-----RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIA 158
               ++F+DE+      R  +   E +     +F              +     R  ++A
Sbjct: 617 VSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFM-------THWDGLLTKPGERILVLA 669

Query: 159 ATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGT 218
           AT R   L   +  RF   I +    +E+ + I++    L       E      + +  T
Sbjct: 670 ATNRPFDLDEAIIRRFERRIMVGLPSVENREMIMK---TLLSKEKVAEGLDFKEL-ATMT 725

Query: 219 PRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLD 264
              +G  L+ +   A     + + ++     L +    +      D
Sbjct: 726 EGYSGSDLKNLCTTAAYRPVRELIQQERLKDLEKKRRAEQRLSPDD 771


>gi|91783455|ref|YP_558661.1| DNA-directed DNA polymerase [Burkholderia xenovorans LB400]
 gi|91687409|gb|ABE30609.1| DNA-directed DNA polymerase [Burkholderia xenovorans LB400]
          Length = 957

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 52/271 (19%), Positives = 94/271 (34%), Gaps = 37/271 (13%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+      GQ      L   ++  +     L H  LF G  G+GKTTL+++ A+ L   
Sbjct: 11  RPKDFASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAMEDFQL 134
              TS P     G   A     E R V +++        +  ++ ++E  +Y  ++    
Sbjct: 66  TGVTSTP----CGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             M+ E             ++++   +    I ATT    +   +  R  +   L     
Sbjct: 122 VYMIDEVHMLTNHAFNAMLKTLEEPPAHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPA 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
             + + ++       +    +A   +A  + G+ R A  L     D A    A  +  E 
Sbjct: 181 GHIVSHLEHILGEEKVPYDVQALRLLARAADGSMRDALSL----TDQAIAYSANQVNEEA 236

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFG 276
               L  L    +      +R L  +A   G
Sbjct: 237 VRGMLGALDQSYL------IRLLDALADGDG 261


>gi|329766196|ref|ZP_08257754.1| AAA family ATPase, CDC48 subfamily protein [Candidatus
           Nitrosoarchaeum limnia SFB1]
 gi|329137255|gb|EGG41533.1| AAA family ATPase, CDC48 subfamily protein [Candidatus
           Nitrosoarchaeum limnia SFB1]
          Length = 715

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 43/155 (27%), Positives = 63/155 (40%), Gaps = 15/155 (9%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLT 101
           K   EA   VL  GPPG GKT LA+ VA E   +F S SGP I           L  +  
Sbjct: 207 KIGVEAPKGVLLYGPPGTGKTLLAKAVAGETSAHFISLSGPEIMGKYYGESEEKLREIFK 266

Query: 102 NLEDR--DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA 159
             E+    ++FIDEI  ++   +E+     +     L+            +  +  +IAA
Sbjct: 267 QAEENSPSIVFIDEIDSIAPKRDEVSGEVEKRIVSQLLT-----LMDGMKSRGKVVVIAA 321

Query: 160 TTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIV 192
           T R   +   L+   RF   I +   + E    I+
Sbjct: 322 TNRPDSIDPALRRPGRFDREIEIGIPDDEGRHEIL 356



 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 71/198 (35%), Gaps = 23/198 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDHV--------LFVGPPGLGKTTLAQVVARE 77
             ++  G  E    L+  IE      EA ++V        L  GPPG GKT +A+ +A  
Sbjct: 450 NWDDVGGLDELKEELREAIEWPIKHKEAFEYVNVEAPKGILLHGPPGTGKTMIAKALATM 509

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIV-EEILYPA 128
              NF S  GP +           +  +          ++F+DE+  L            
Sbjct: 510 TDSNFISIKGPELLSKWVGESEKGVREIFRKARQAAPCIIFLDEVDALVPRRGSGDSGSH 569

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  +  ++ E          L    +I AT R+ ++   L    RF   I +   + +
Sbjct: 570 VTENVVSQILTEIDGLE----ELHNVLIIGATNRLDIVDEALLRPGRFDRIIEVPNPDSK 625

Query: 187 DLKTIVQRGAKLTGLAVT 204
             + I +  +K   L+  
Sbjct: 626 GREQIFKIHSKKKPLSND 643


>gi|94264278|ref|ZP_01288072.1| DNA-directed DNA polymerase [delta proteobacterium MLMS-1]
 gi|93455323|gb|EAT05530.1| DNA-directed DNA polymerase [delta proteobacterium MLMS-1]
          Length = 706

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 81/228 (35%), Gaps = 24/228 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPRT  E  GQ      L+  +   +        +LF G  G+GKTTLA+++A+ L    
Sbjct: 11  RPRTFAEVVGQRPVVRTLQNALRLQRVAHA----MLFAGVRGVGKTTLARLMAKALNCQE 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE--------ILYPAMEDFQL 134
              +     +      +       D+  ID     +  ++E           P    +++
Sbjct: 67  PEPASRPCNQCKSCQEINAGAAV-DLHEIDGAS--NRGIQEIRELKENIRFLPVSASYKI 123

Query: 135 DLM------VGEGPSARSVKINLSR--FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++        E  +A    +         + ATT +  +   +  R            E
Sbjct: 124 VIIDEVHMLTTEAFNALLKTLEEPPAHVYFMFATTELHKIPITILSRCQRYELTRVAYDE 183

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
            L    Q  A+   + +++ A   I+  + G+ R    LL +V  FA+
Sbjct: 184 LLAFFRQVAARE-EVTISEAALAMISREADGSVRDGLSLLDQVFSFAD 230


>gi|308451925|ref|XP_003088853.1| hypothetical protein CRE_14423 [Caenorhabditis remanei]
 gi|308245130|gb|EFO89082.1| hypothetical protein CRE_14423 [Caenorhabditis remanei]
          Length = 364

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 84/222 (37%), Gaps = 24/222 (10%)

Query: 28  EEFTGQVEACSNLK-----VFIEAAKARAEALD---HVLFVGPPGLGKTTLAQVVARELG 79
           +E  G  E  + LK         AA++ +  L     +L  GPPG GKT LA+ VAR  G
Sbjct: 83  DEIGGCEELVAELKDRIILPLRFAAQSGSHLLSPPRGILLYGPPGCGKTLLAKAVARAAG 142

Query: 80  VNFRSTSGPVI-----AKAGDLAALLTNLEDR---DVLFIDEIHRLSIIVEEILYPAMED 131
             F +    ++      ++  LAA + ++  +    ++FIDEI       +   + +   
Sbjct: 143 CRFINLQVSILTDKWYGESQKLAAAVFSVAQKFQPTIIFIDEIDSFLRDRQSHDHESTAM 202

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
            +   M      A S      +  ++ AT R   +   +  R     ++     +    I
Sbjct: 203 MKAQFMTLWDGFASSGD----QVIVMGATNRPRDVDAAILRRMTARFQVPVPNAKQRSQI 258

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
           +    +            EIA ++ G   ++G  L+ V   A
Sbjct: 259 LNVILRNETFE-DSVDLEEIAQKAEG---LSGSDLKEVSILA 296


>gi|300312975|ref|YP_003777067.1| DNA polymerase III subunit gamma/tau [Herbaspirillum seropedicae
           SmR1]
 gi|300075760|gb|ADJ65159.1| DNA polymerase III (subunits tau and gamma) protein [Herbaspirillum
           seropedicae SmR1]
          Length = 712

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 55/282 (19%), Positives = 99/282 (35%), Gaps = 34/282 (12%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARE 77
               RPR+ +   GQ      L   +E      + L H  LF G  G+GKTTL++++A+ 
Sbjct: 7   ARKYRPRSFDTLVGQEHVVRALTHALE-----QQRLHHAYLFTGTRGVGKTTLSRILAKS 61

Query: 78  LGVNFRSTSGPVI-AKAGDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAM 129
           L       +G +  A  G   A +     R V +I+        +  ++ ++E+ +Y   
Sbjct: 62  LNCVGPDGAGGITAAPCGVCEACVAIDAGRFVDYIEMDAASNRGVDEMAQLLEQAIYAPS 121

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                  M+ E             ++++        I ATT    +   +  R  +   L
Sbjct: 122 NARFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHIKFILATTDPQKIPVTVLSRC-LQFNL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
                  +   +       G+     A   +A  + G+ R A  L  +   +A    A  
Sbjct: 181 KQMPPGHIIGHLDNILNQEGIEFDAPALRLLAQGASGSMRDALSLTDQAIAYA----AGK 236

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGI 282
           +T E     L  L    +      +R L  +A   G   +G+
Sbjct: 237 VTLEAVQGMLGALDQSYL------IRILDALAVQDGAALLGV 272


>gi|227830675|ref|YP_002832455.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus L.S.2.15]
 gi|229579582|ref|YP_002837981.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus
           Y.G.57.14]
 gi|284998202|ref|YP_003419969.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus L.D.8.5]
 gi|227457123|gb|ACP35810.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus L.S.2.15]
 gi|228010297|gb|ACP46059.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus
           Y.G.57.14]
 gi|284446097|gb|ADB87599.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus L.D.8.5]
          Length = 759

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 55/244 (22%), Positives = 86/244 (35%), Gaps = 24/244 (9%)

Query: 9   SRNVSQEDADISLLRPR-TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLF 59
           S  + QE    +   P+ T E+     +    ++  +E      E   H        VL 
Sbjct: 171 SLEIRQEPVKETAAVPKVTWEDIGDLEDVKEKIREIVELPMRHPEVFQHLGIEPPKGVLL 230

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFI 111
            GPPG+GKT LA+ +A E+G  F S +GP I           L  +    E     ++FI
Sbjct: 231 YGPPGVGKTLLARALANEIGAYFTSINGPEIMSKFYGESEQRLREIFEEAEKNAPAIIFI 290

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DEI  ++   EE+     +     L+               +  +I AT R   +   L+
Sbjct: 291 DEIDAIAPKREEVTGEVEKRVVAQLLT-----LMDGIKGRGKVIVIGATNRPDAVDPALR 345

Query: 172 D--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
              RF   I +   + +  K I+Q   +   LA   +           T      L R  
Sbjct: 346 RPGRFDREIEIRPPDAKARKEILQVHTRNMPLAEDVDLDKISEQTHGYTGADLAALAREA 405

Query: 230 RDFA 233
              A
Sbjct: 406 AMNA 409



 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 47/193 (24%), Positives = 73/193 (37%), Gaps = 22/193 (11%)

Query: 28  EEFTGQVEACSNLKVFIE--------AAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           E+  G  EA   L+  +E          K        +L  GPPG GKT LA+ VA E G
Sbjct: 466 EDIGGLEEAKQQLREAVEWPLKFPEMFEKLGIRPPKGILLFGPPGTGKTMLAKAVATESG 525

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMED 131
            NF +  GP I           +  +          V+F DEI  ++ +         + 
Sbjct: 526 ANFIAVRGPEILSKWVGESEKAVREIFRRARQTAPCVIFFDEIDSIAPMR----GFTHDS 581

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
              + +V +  S      +L+R  +IAAT R  +L   L    RF   I +   + +   
Sbjct: 582 GVTERIVNQLLSEMDGIQSLNRVVVIAATNRPDILDPALLRPGRFDRLIYVPPPDEKARI 641

Query: 190 TIVQRGAKLTGLA 202
            I++   K   + 
Sbjct: 642 EILKIYTKTLPID 654


>gi|34558379|ref|NP_908194.1| DNA polymerase III subunits gamma and tau [Wolinella succinogenes
           DSM 1740]
 gi|34484098|emb|CAE11094.1| DNA POLYMERASE III SUBUNITS GAMMA AND TAU [Wolinella succinogenes]
          Length = 544

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 46/251 (18%), Positives = 81/251 (32%), Gaps = 49/251 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     RP   E+  GQ      L + +++ +     L H  LF G  G GKT+ A++ +
Sbjct: 4   ALALKYRPTRFEDLIGQDPISQTLSLALDSGR-----LSHAYLFSGLRGSGKTSSARIFS 58

Query: 76  RELGV------------------------NFRSTSGPVIAKAGDLAALLTN------LED 105
           + L                          +          K  D+  L+        +  
Sbjct: 59  KALNCAQGPSSTPCDVCENCLAAKEGRHMDIIEMDAASSRKIDDIRDLIEQTKYHPAMGR 118

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMED--FQLDLMVGEGPSARSVKINLS-----RFTLIA 158
             +  IDE+H L+      L   +E+    +  ++      +     LS     RF  IA
Sbjct: 119 FKIFIIDEVHMLTKEAFNALLKTLEEPPPYVKFILATTDPLKLPATILSRTQHFRFKKIA 178

Query: 159 ATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGT 218
               +  +   L       +    +E E L+ I + G       +T      I  +   T
Sbjct: 179 HRDVIAHIQKILH------LENVPFEPEALEMIARSGGGSLRDTLTLLDQSIIFCKGNLT 232

Query: 219 PRIAGRLLRRV 229
           P +  ++L  V
Sbjct: 233 PALVAQMLGLV 243


>gi|242058891|ref|XP_002458591.1| hypothetical protein SORBIDRAFT_03g036320 [Sorghum bicolor]
 gi|241930566|gb|EES03711.1| hypothetical protein SORBIDRAFT_03g036320 [Sorghum bicolor]
          Length = 1176

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 52/234 (22%), Positives = 85/234 (36%), Gaps = 25/234 (10%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           VS   +     RPR+  E  GQ     +L   I    AR       LF GP G GKT+ A
Sbjct: 413 VSDHRSLSQKYRPRSFLEIVGQNFVVQSLSNAI----ARERIAPAYLFHGPRGTGKTSSA 468

Query: 72  QVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEI 124
           ++++  L       + P  V  +  D           +++ +D      I+R+  ++E I
Sbjct: 469 RILSAALSCTATGETKPCGVCTECSD----FFTGNGINLIEVDATNRKGINRVRHLIENI 524

Query: 125 LYPAMEDFQLDLMVGEGPSARS---------VKINLSRFTLIAATTRVGLLTNPLQDRFG 175
              A        +V E     S         +   L R   I  T     L   +  R  
Sbjct: 525 PASATSSRYKVFVVDECHMVSSKVWSAFMKFLDEPLPRVVFIFITIDPENLPRSVVSRCQ 584

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
             +     +I+ +   +++ A    L V   A   IA+ S G+ R A  +L ++
Sbjct: 585 KYMFSKIKDIDIVCR-LRKIAMKENLDVELAALDLIALNSDGSLRDAETMLDQL 637


>gi|298345494|ref|YP_003718181.1| ATP-dependent metalloprotease FtsH [Mobiluncus curtisii ATCC 43063]
 gi|304391050|ref|ZP_07373002.1| cell division protein FtsH [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|298235555|gb|ADI66687.1| ATP-dependent metalloprotease FtsH [Mobiluncus curtisii ATCC 43063]
 gi|304325933|gb|EFL93179.1| cell division protein FtsH [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
          Length = 759

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 61/249 (24%), Positives = 91/249 (36%), Gaps = 29/249 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  EA   L+   E         K  A+    VL  GPPG GKT LA+ VA E 
Sbjct: 185 TFADVAGVNEAVEELQEIKEFLAEPEKFHKLGAKIPKGVLLYGPPGTGKTLLARAVAGEA 244

Query: 79  GVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           GV F S SG            ++  DL           ++F+DEI  +       L    
Sbjct: 245 GVPFFSMSGSEFVEMFVGMGASRVRDLFEQARAAAP-AIIFVDEIDAVGRHRGTGLGGGH 303

Query: 130 EDFQLD----LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183
           ++ +      L+  +G   R+  I      +IAAT R  +L   L    RF   + +   
Sbjct: 304 DEREQTLNQLLVEMDGFDERTNVI------MIAATNRADVLDPALLRPGRFDRQVAVEAP 357

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           +++  + I+   AK   L    +           T      +L      A     +TIT 
Sbjct: 358 DLKGREAILAVHAKNKPLDPETDMKSLAKRSPGFTGADLANVLNEAALLAARHSRETITA 417

Query: 244 EIADAALLR 252
           +  D A+ R
Sbjct: 418 QDLDEAVDR 426


>gi|198463843|ref|XP_001352961.2| GA21329 [Drosophila pseudoobscura pseudoobscura]
 gi|198151435|gb|EAL30462.2| GA21329 [Drosophila pseudoobscura pseudoobscura]
          Length = 974

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 41/242 (16%), Positives = 80/242 (33%), Gaps = 37/242 (15%)

Query: 32  GQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           G  +    +  FI  +  +      +L F GPPG+GKT++A+ +AR L   +   S   +
Sbjct: 476 GMEDIKKRILEFIAVSSLKGSTQGKILCFHGPPGVGKTSIAKSIARALNREYFRFSVGGM 535

Query: 91  AKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE--------EILY 126
               ++                        +  ++ IDE+ ++    +        E+L 
Sbjct: 536 TDVAEIKGHRRTYVGAMPGKLIQCLKKTKTENPLVLIDEVDKIGKGYQGDPSSALLELLD 595

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           P      LD           V I+LSR   I     +  +  PL+DR  +     +   E
Sbjct: 596 PEQNANFLD-------HYLDVPIDLSRVLFICTANVIDTIPEPLRDRMELIEMSGYVAEE 648

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
            +       A+   +  +             T +    L+R     + V + +    ++ 
Sbjct: 649 KVA-----IARQYLIPQSMNDCGLTDEHISITEKALNMLIRSYCRESGVRNLQKQIEKVI 703

Query: 247 DA 248
             
Sbjct: 704 RK 705


>gi|187923816|ref|YP_001895458.1| DNA polymerase III subunits gamma and tau [Burkholderia
           phytofirmans PsJN]
 gi|187715010|gb|ACD16234.1| DNA polymerase III, subunits gamma and tau [Burkholderia
           phytofirmans PsJN]
          Length = 893

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 52/271 (19%), Positives = 94/271 (34%), Gaps = 37/271 (13%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+      GQ      L   ++  +     L H  LF G  G+GKTTL+++ A+ L   
Sbjct: 11  RPKDFASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAMEDFQL 134
              TS P     G   A     E R V +++        +  ++ ++E  +Y  ++    
Sbjct: 66  TGVTSTP----CGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             M+ E             ++++   +    I ATT    +   +  R  +   L     
Sbjct: 122 VYMIDEVHMLTNHAFNAMLKTLEEPPAHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPA 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
             + + ++       +    +A   +A  + G+ R A  L     D A    A  +  E 
Sbjct: 181 GHIVSHLEHILGEEKVPYDAQALRLLARAADGSMRDALSL----TDQAIAYSANQVNEEA 236

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFG 276
               L  L    +      +R L  +A   G
Sbjct: 237 VRGMLGALDQSYL------IRLLDALADGDG 261


>gi|269302914|gb|ACZ33014.1| DNA polymerase III, subunits gamma and tau [Chlamydophila
           pneumoniae LPCoLN]
          Length = 442

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 58/276 (21%), Positives = 97/276 (35%), Gaps = 32/276 (11%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLK---VFIEAAKARAEALDHVLFVGPPGLGK 67
            +    A     RP+   E  GQ    + LK   +F  AA A        LF G  G GK
Sbjct: 2   TLQPYQASSRKYRPQIFREILGQSSVVAVLKNALIFNRAAHAY-------LFSGIRGTGK 54

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHR-----LSIIVE 122
           TTLA+++A+ L     S  G    +      + +     DVL ID         +  I E
Sbjct: 55  TTLARILAKALNCVHLSEDGEPCNQCFSCKEIASG-SSLDVLEIDGASHRGIEDIRQINE 113

Query: 123 EILYPAMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
            +L+  ++      ++ E             ++++          ATT +  +   +  R
Sbjct: 114 TVLFTPVKAKFKIYIIDEVHMLTKEAFNALLKTLEEPPQHVKFFFATTEIHKIPGTILSR 173

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                     E   L+ +    A+   +  + EA   IA  ++G+ R A  L   V    
Sbjct: 174 CQKMHLQRIPEKTILEKLSLM-AQDDHIEASQEALAPIARAAQGSLRDAESLYDYVISLF 232

Query: 234 EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLT 269
                K+++ +    AL   + D +    LD   L 
Sbjct: 233 P----KSLSPDTVAQALGFASQDSLR--TLDNAILQ 262


>gi|227827953|ref|YP_002829733.1| ATPase AAA [Sulfolobus islandicus M.14.25]
 gi|229585220|ref|YP_002843722.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus M.16.27]
 gi|238620179|ref|YP_002915005.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus M.16.4]
 gi|227459749|gb|ACP38435.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus M.14.25]
 gi|228020270|gb|ACP55677.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus M.16.27]
 gi|238381249|gb|ACR42337.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus M.16.4]
 gi|323475040|gb|ADX85646.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus REY15A]
 gi|323477771|gb|ADX83009.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus HVE10/4]
          Length = 759

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 55/244 (22%), Positives = 86/244 (35%), Gaps = 24/244 (9%)

Query: 9   SRNVSQEDADISLLRPR-TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLF 59
           S  + QE    +   P+ T E+     +    ++  +E      E   H        VL 
Sbjct: 171 SLEIRQEPVKETAAVPKVTWEDIGDLEDVKEKIREIVELPMRHPEVFQHLGIEPPKGVLL 230

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFI 111
            GPPG+GKT LA+ +A E+G  F S +GP I           L  +    E     ++FI
Sbjct: 231 YGPPGVGKTLLARALANEIGAYFTSINGPEIMSKFYGESEQRLREIFEEAEKNAPAIIFI 290

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DEI  ++   EE+     +     L+               +  +I AT R   +   L+
Sbjct: 291 DEIDAIAPKREEVTGEVEKRVVAQLLT-----LMDGIKGRGKVIVIGATNRPDAVDPALR 345

Query: 172 D--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
              RF   I +   + +  K I+Q   +   LA   +           T      L R  
Sbjct: 346 RPGRFDREIEIRPPDAKARKEILQVHTRNMPLAEDVDLDKISEQTHGYTGADLAALAREA 405

Query: 230 RDFA 233
              A
Sbjct: 406 AMNA 409



 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 47/193 (24%), Positives = 73/193 (37%), Gaps = 22/193 (11%)

Query: 28  EEFTGQVEACSNLKVFIE--------AAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           E+  G  EA   L+  +E          K        +L  GPPG GKT LA+ VA E G
Sbjct: 466 EDIGGLEEAKQQLREAVEWPLKFPEMFEKLGIRPPKGILLFGPPGTGKTMLAKAVATESG 525

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMED 131
            NF +  GP I           +  +          V+F DEI  ++ +         + 
Sbjct: 526 ANFIAVRGPEILSKWVGESEKAVREIFRRARQTAPCVIFFDEIDSIAPMR----GFTHDS 581

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
              + +V +  S      +L+R  +IAAT R  +L   L    RF   I +   + +   
Sbjct: 582 GVTERIVNQLLSEMDGIQSLNRVVVIAATNRPDILDPALLRPGRFDRLIYVPPPDEKARI 641

Query: 190 TIVQRGAKLTGLA 202
            I++   K   + 
Sbjct: 642 EILKIYTKTLPID 654


>gi|114320666|ref|YP_742349.1| DNA polymerase III, tau subunit / DNA polymerase III, gamma subunit
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227060|gb|ABI56859.1| DNA polymerase III, gamma subunit [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 648

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 56/261 (21%), Positives = 87/261 (33%), Gaps = 63/261 (24%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPRT  E  GQ      L+  + A + +   L H  LF G  G+GKTT+A+++A+ L   
Sbjct: 11  RPRTFSEMAGQEHV---LRALVNALEQQ--RLHHAYLFTGTRGVGKTTVARILAKCLNCE 65

Query: 82  ------------------------FRSTSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                             K  D   LL N++         +  I
Sbjct: 66  QGVTAEPCGTCDACRELDAGRFVDLIEVDAASRTKVEDTRELLDNVQYAPTRGRYKIYLI 125

Query: 112 DEIHRLSIIVEEILYPAMED--FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           DE+H LS      L   +E+    +  ++      +     LSR          G L   
Sbjct: 126 DEVHMLSGHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSRCLQFNLKNLPGGLVA- 184

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
                           + L T+V+      G+A   +A   +   ++G+ R A  LL   
Sbjct: 185 ----------------DYLHTVVE----QEGVAAEPQALARLGQAAKGSMRDALSLL--- 221

Query: 230 RDFAEVAHAKTITREIADAAL 250
            D A    A  +  +   A L
Sbjct: 222 -DQAIAFGAGAVREDEVCAML 241


>gi|332796313|ref|YP_004457813.1| AAA ATPase [Acidianus hospitalis W1]
 gi|332694048|gb|AEE93515.1| AAA family ATPase, CDC48 subfamily [Acidianus hospitalis W1]
          Length = 767

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 66/330 (20%), Positives = 115/330 (34%), Gaps = 35/330 (10%)

Query: 16  DADISLLR-PR-TLEEFTGQVEACSNLKVFIEA--------AKARAEALDHVLFVGPPGL 65
           D  +   R PR T E+  G       ++  +E          +   E    VL  GPPG 
Sbjct: 176 DKPVEQTRYPRVTYEDIGGLKNIIQKVRELVELPLRHPELFKRLGIEPPKGVLLYGPPGT 235

Query: 66  GKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRL 117
           GKT LA+ VA E    F S +GP I           L  +  + +     ++FIDEI  +
Sbjct: 236 GKTLLAKAVANETDAYFTSINGPEIMSKFYGESEQRLREIFEDAKKHAPAIIFIDEIDAI 295

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFG 175
           +   +E++          L+            +     +IAAT R   +   L+   RF 
Sbjct: 296 APKRDEVIGEVERRVVAQLLT-----LMDGLESRGNVIVIAATNRPNAVDPALRRPGRFD 350

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
             I +   + +    I+Q   +   LA   +      +    T      L+R     A  
Sbjct: 351 REIEIPLPDKQGRLEILQIHTRNMPLAKDVDLEKLAEVTHGYTGADLAALVREAAMNALR 410

Query: 236 A---HAKTITREIADAALLRLAIDKMGFDQLDLRYL-TMIARNFGGGP-VGIETISAGLS 290
                      +I    L  + +    F       + + +   +   P V  + I  GL 
Sbjct: 411 RYLPKIDITLDKIPPEILESMEVKMEDFMNALKEIVPSGMREIYIEVPEVRWDDI-GGLG 469

Query: 291 EPRDAIEDLIEPYMIQQGFIQRT----PRG 316
           + ++ + ++ E  +  Q + + T    P+G
Sbjct: 470 DIKEELREVAEYPLKFQEYYEMTGIEPPKG 499



 Score = 52.4 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 51/240 (21%), Positives = 86/240 (35%), Gaps = 22/240 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA--------RAEALDHVLFVGPPGLGKTTLAQVVARE 77
             ++  G  +    L+   E              E    +L  GPPG GKT LA+ VA E
Sbjct: 461 RWDDIGGLGDIKEELREVAEYPLKFQEYYEMTGIEPPKGILLFGPPGTGKTMLAKAVATE 520

Query: 78  LGVNFRSTSGP-VIAK-AGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAM 129
            G NF +  GP V++K  G+    +  +  +       V+F DEI  ++ +       + 
Sbjct: 521 SGANFIAVRGPEVLSKWVGESERAIREIFRKARMYAPTVIFFDEIDAIAPMR----GMSP 576

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
           +    + +V +  +       L    +IAAT R  +L   L    RF   I +   + + 
Sbjct: 577 DTGVTERIVNQLLAEMDGIEKLDNVVIIAATNRPDILDPALLRPGRFEKLIYVPPPDKQA 636

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
              I++   K   L                T      L+R     A     KT   ++++
Sbjct: 637 RYEILRVHTKKVVLGEDVNLEEIAEKTDGYTGADLAALVREAAMIAIREGMKTCIDKVSN 696


>gi|222110704|ref|YP_002552968.1| DNA polymerase iii subunits gamma and tau [Acidovorax ebreus TPSY]
 gi|221730148|gb|ACM32968.1| DNA polymerase III, subunits gamma and tau [Acidovorax ebreus TPSY]
          Length = 678

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 51/320 (15%), Positives = 90/320 (28%), Gaps = 75/320 (23%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARE 77
               RP+T  E  GQ      L   +       + L H  LF G  G+GKTT+++++A+ 
Sbjct: 7   ARKYRPKTFSEMVGQEHVVQALSNALT-----QQRLHHAYLFTGTRGVGKTTVSRILAKS 61

Query: 78  LGVN-----------------------------FRSTSGPVIAKAGDLAALLTNL----- 103
           L                                +            ++  LL        
Sbjct: 62  LNCQGPDGQGGITATPCGVCPACTDIDSGRFPDYTELDAASNRGVDEVQGLLEQAVYKPV 121

Query: 104 -EDRDVLFIDEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAAT 160
                V  IDE+H L+      +   +E+    L  ++      +     LSR       
Sbjct: 122 QGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNLR 181

Query: 161 TRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPR 220
                                    E +   + R      +    +A   +A  +RG+ R
Sbjct: 182 PMA---------------------PETVLEHLTRVLAAENVPAEPQALRLLARAARGSMR 220

Query: 221 IAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV 280
            A  L     D A    +  +        L  +    +       R +  +A+  G   V
Sbjct: 221 DALSL----TDQAIAFGSGQLQEAAVRQMLGSVDRSHVF------RLIDALAQGDGRTVV 270

Query: 281 G-IETISAGLSEPRDAIEDL 299
              +T+          +ED+
Sbjct: 271 ETADTLRINGLSAASTLEDM 290


>gi|198274399|ref|ZP_03206931.1| hypothetical protein BACPLE_00544 [Bacteroides plebeius DSM 17135]
 gi|198272765|gb|EDY97034.1| hypothetical protein BACPLE_00544 [Bacteroides plebeius DSM 17135]
          Length = 619

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 56/241 (23%), Positives = 87/241 (36%), Gaps = 22/241 (9%)

Query: 25  RTLEEFTGQVEACSNLKV---FIEAAKARAEALDHV----LFVGPPGLGKTTLAQVVARE 77
            T  +  GQ EA   LK    F+   K   +    +    L VGPPG GKT +A+ VA E
Sbjct: 174 TTFADVAGQNEAKEMLKEIVDFLHNPKKYTDIGASLPKGALLVGPPGTGKTLIARAVAGE 233

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
             V F + SG           A  +  L     ++   ++FIDEI  +    +  L    
Sbjct: 234 AKVPFFAISGSEFVQMFVGMGAAKVRDLFRQANEKAPCIIFIDEIDAIGKRRDSGLGGND 293

Query: 130 E-DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           E +  L+ ++ E       K       ++AAT R   L   L    RF   I++   ++E
Sbjct: 294 EREQTLNQLLTEMDGFDGRKG----VVILAATNRPENLDKALLRPGRFDRRIQMELPDLE 349

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             K I+    K       D      A        +A  +         +   K  T ++ 
Sbjct: 350 GRKAILNVHLKRVKHEEVDIDVVARATAGTSGAELANIVNEAALRAVRMGRNKINTADLE 409

Query: 247 D 247
           +
Sbjct: 410 E 410


>gi|54308210|ref|YP_129230.1| DNA polymerase III subunits gamma and tau [Photobacterium profundum
           SS9]
 gi|46912638|emb|CAG19428.1| Hypothetical DNA polymerase III, subunits gamma and tau
           [Photobacterium profundum SS9]
          Length = 753

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 49/266 (18%), Positives = 80/266 (30%), Gaps = 59/266 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP    +  GQ    + L   +         L H  LF G  G+GKTT+A++ A+ L   
Sbjct: 11  RPYQFSDVVGQSHVLTALSNALT-----HNRLHHAYLFSGTRGVGKTTIARIFAKGLNCE 65

Query: 82  ------------------------FRSTSGPVIAKAGDLAALLTNLEDRD------VLFI 111
                                             K  D   LL N++ +       V  I
Sbjct: 66  QGITATPCGQCGTCKEIDEGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         I ATT    L   + 
Sbjct: 126 DEVHMLSRHSFNALLKTLEE------------------PPEYVKFILATTDPQKLPVTIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L   + + +++ +        +    +A   ++  + G+ R A  L     D
Sbjct: 168 SRC-LQFHLKHLDNDQIQSQLSNVLTQENVDFEPKALSLLSRAAEGSMRDALSL----TD 222

Query: 232 FAEVAHAKTITREIADAALLRLAIDK 257
            A       +  +     L  L  D+
Sbjct: 223 QAIALGNGQVHADSVSMMLGTLNTDQ 248


>gi|41615216|ref|NP_963714.1| replication factor C large subunit [Nanoarchaeum equitans Kin4-M]
 gi|42559421|sp|P60373|RFCL_NANEQ RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|40068940|gb|AAR39275.1| NEQ430 [Nanoarchaeum equitans Kin4-M]
          Length = 430

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 78/214 (36%), Gaps = 24/214 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+TL+E   Q +A   L+ ++   K + +    +L  GPPG GKT+    +A ELG   
Sbjct: 38  RPKTLDEVENQEQAKQILRDYVINYKKKYKG-KALLLYGPPGTGKTSSVYALANELGYEV 96

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRD-------VLFIDEIHRLSIIVEEILYPAMEDFQLD 135
              +      A  +  ++              ++ +DE+  LS   +           L 
Sbjct: 97  LEVNASDERDAIHIHHIVGEASKGKPLFHKGRIILVDEVDGLSGKEDRG-----GVGALV 151

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
            ++ +               +  A          L++   I +       + +  ++++ 
Sbjct: 152 NIIKQSSWP----------IICTANDPWDQKLKKLRE-ISIMVEFKRLSPKHVYNVLKKI 200

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
                + ++D+   +IA +S G  R A   L  +
Sbjct: 201 VTNEKIKISDKILWDIAYKSGGDLRAAINDLETI 234


>gi|330850841|ref|YP_004376591.1| cell division protein FtsH-like protein [Fistulifera sp. JPCC
           DA0580]
 gi|328835661|dbj|BAK18957.1| cell division protein FtsH-like protein [Fistulifera sp. JPCC
           DA0580]
          Length = 626

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 63/283 (22%), Positives = 98/283 (34%), Gaps = 27/283 (9%)

Query: 27  LEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTS 86
            EE           +  +  AK        VL VGPPG GKT LA+ +A E  V F S +
Sbjct: 194 FEEIV--SFLKEPERYTLVGAK----IPKGVLLVGPPGTGKTLLAKAIANEANVPFYSVA 247

Query: 87  GPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDL-- 136
           G           A  +  L     +    ++FIDEI  +       +    ++ +  L  
Sbjct: 248 GSEFVEMFIGIGAARIRDLFKKASENTPCIVFIDEIDAVGRERGAGIGGGNDEREQTLNQ 307

Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQR 194
           ++ E    +  K       ++ AT RV +L   L    RF   I +   +      I++ 
Sbjct: 308 LLTEMDGFKENKG----VIVVGATNRVDILDAALLRPGRFDRQITVGLPDRLGRIGILKV 363

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            AK   LA               +      LL      A     +TIT+   + A+ R+ 
Sbjct: 364 HAKNKPLAEDVSLVQLANRTPGFSGADLANLLNEAAILATRYKKQTITKNEVNEAVDRVI 423

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
               G    D +   +IA +  G       I   + E  D +E
Sbjct: 424 GGIAGSSMDDTKNKKLIAYHEVGH-----AIVGSVLENHDEVE 461


>gi|78224612|ref|YP_386359.1| DNA polymerase III subunits gamma/tau [Geobacter metallireducens
           GS-15]
 gi|78195867|gb|ABB33634.1| DNA polymerase III, tau subunit [Geobacter metallireducens GS-15]
          Length = 582

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 53/312 (16%), Positives = 96/312 (30%), Gaps = 84/312 (26%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN- 81
           RP+T  + TGQ      L+  I++ +         LF G  G+GKT+ A+++A+ L    
Sbjct: 11  RPQTFSDLTGQEHVSQTLQNAIDSGRIAHA----FLFTGARGVGKTSSARILAKALTCEQ 66

Query: 82  -----------------------FRSTSGPVIAKAGDLAALLTNLE------DRDVLFID 112
                                       G       D+  L  N++         +  ID
Sbjct: 67  GMSPEPCNVCPACTEITAGTAVDVLEIDGASNTGVDDIRELRENVKYLPSRLRYKIFIID 126

Query: 113 EIHRLSIIVEEILYPAMED--FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           E+H LS      L   +E+    +  +       +     LSR                 
Sbjct: 127 EVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQ--------------- 171

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
             RF          +  L+ IV       G+A++D +   +A +  G+ R +  +L +V 
Sbjct: 172 --RFDFRRIPLGKVVGRLRHIV----DQEGIAISDASLTMVARKGDGSMRDSLSVLDQVL 225

Query: 231 DFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
            F      +    E+                 +D R L             ++  +A   
Sbjct: 226 AFC---GDQVRDEEVVSL-----------LGVVDRRLL-------------LDATAAVFG 258

Query: 291 EPRDAIEDLIEP 302
                + D++  
Sbjct: 259 RDTRTVLDIVAR 270


>gi|308481279|ref|XP_003102845.1| hypothetical protein CRE_29903 [Caenorhabditis remanei]
 gi|308260931|gb|EFP04884.1| hypothetical protein CRE_29903 [Caenorhabditis remanei]
          Length = 352

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 84/222 (37%), Gaps = 24/222 (10%)

Query: 28  EEFTGQVEACSNLK-----VFIEAAKARAEALD---HVLFVGPPGLGKTTLAQVVARELG 79
           +E  G  E  + LK         AA++ +  L     +L  GPPG GKT LA+ VAR  G
Sbjct: 83  DEIGGCEELVAELKDRIILPLRFAAQSGSHLLSPPRGILLYGPPGCGKTLLAKAVARAAG 142

Query: 80  VNFRSTSGPVI-----AKAGDLAALLTNLEDR---DVLFIDEIHRLSIIVEEILYPAMED 131
             F +    ++      ++  LAA + ++  +    ++FIDEI       +   + +   
Sbjct: 143 CRFINLQVSILTDKWYGESQKLAAAVFSVAQKFQPTIIFIDEIDSFLRDRQSHDHESTAM 202

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
            +   M      A S      +  ++ AT R   +   +  R     ++     +    I
Sbjct: 203 MKAQFMTLWDGFASSGD----QVIVMGATNRPRDVDAAILRRMTARFQVPVPNAKQRSQI 258

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
           +    +            EIA ++ G   ++G  L+ V   A
Sbjct: 259 LNVILRNETFE-DSVDLEEIAQKAEG---LSGSDLKEVSILA 296


>gi|302813098|ref|XP_002988235.1| hypothetical protein SELMODRAFT_235493 [Selaginella moellendorffii]
 gi|302819400|ref|XP_002991370.1| hypothetical protein SELMODRAFT_236274 [Selaginella moellendorffii]
 gi|300140763|gb|EFJ07482.1| hypothetical protein SELMODRAFT_236274 [Selaginella moellendorffii]
 gi|300143967|gb|EFJ10654.1| hypothetical protein SELMODRAFT_235493 [Selaginella moellendorffii]
          Length = 332

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 35/236 (14%), Positives = 72/236 (30%), Gaps = 40/236 (16%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           +++ + +    +   RP +L +     +    +             L H+L  GPPG GK
Sbjct: 1   MTQELQRSGPWVEKYRPASLADVAAHKDIIDTIDRL-----TAENKLPHLLLYGPPGTGK 55

Query: 68  TTLAQVVAR-----ELGVNFRSTSGPVIAKAGDLAALLTN-LEDRDVLF----------I 111
           T+    VAR     +        +         +   + +    + + F          +
Sbjct: 56  TSTILAVARKLYGPQFQNMILELNASDDRGIDVVRQQIQDFASTQSISFGEKANVKLIIL 115

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE   ++   +  L   +E +       +                      V  +   LQ
Sbjct: 116 DEADAMTKDAQFSLRRIIEKY------TKNTRF------------CLICNYVSKIIPALQ 157

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
            R     R    + + ++  ++       L VT++    I   S G  R A  +L+
Sbjct: 158 SRC-TRFRFPPLQAQHVRERLEFVIDQERLDVTEDGLSAIVRLSNGDMRKALNILQ 212


>gi|253996278|ref|YP_003048342.1| DNA polymerase III subunits gamma and tau [Methylotenera mobilis
           JLW8]
 gi|253982957|gb|ACT47815.1| DNA polymerase III, subunits gamma and tau [Methylotenera mobilis
           JLW8]
          Length = 564

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 63/223 (28%), Gaps = 43/223 (19%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP++ E   GQ      L   +E        L H  LF G  G+GKTTLA+++A+ L   
Sbjct: 11  RPKSFETLVGQDHVVRALTNALE-----QNRLHHAYLFTGTRGVGKTTLARILAKSLNCE 65

Query: 82  F------------------------RSTSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                             +   +  LL N +         V  I
Sbjct: 66  TGITAKPCGVCNACTEIDKGRFVDLIEVDAASNTQVDAMRDLLDNAQYAPTAGRFKVYII 125

Query: 112 DEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAA-----TTRVG 164
           DE+H LS      +   +E+    +  ++      +     LSR           T+   
Sbjct: 126 DEVHMLSKSAFNAMLKTLEEPPAHVKFILATTDPQKVPVTVLSRCLQFNLRQMAGTSITS 185

Query: 165 LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEA 207
            L N L            + I        R A           
Sbjct: 186 HLQNILTQENIAFEPTALHLISRAAAGSMRDALSLTDQAIAYG 228


>gi|224536929|ref|ZP_03677468.1| hypothetical protein BACCELL_01805 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521456|gb|EEF90561.1| hypothetical protein BACCELL_01805 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 1113

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 46/204 (22%), Positives = 77/204 (37%), Gaps = 30/204 (14%)

Query: 27  LEEFTGQVEACSNLKVFI---------EAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           L+EF G  E  + ++  I         + A A+ E  DH LF+G PG GKTT+A++ A  
Sbjct: 296 LDEFVGIDEIKATVQKIINKIDFERERKGAGAKREVKDHFLFLGNPGTGKTTIARIFADI 355

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDRD--------------VLFIDEIHRLSIIVEE 123
           L        G ++        L+     +               VLFIDE + L     +
Sbjct: 356 LNSLEVLPIGQLVE--VSRKELVAGYVGQTALAVEKYVDMAMGGVLFIDEAYTLKQGDND 413

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
                  D  L L+        ++    ++      ++  G+       RF   +    Y
Sbjct: 414 QFGQEAIDTLLKLVEDRRGQFVAIAAGYTKEMGEFLSSNSGM-----ASRFNETVTFRDY 468

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEA 207
           + ++L  I +R  K   L + +EA
Sbjct: 469 KADELTEIFRRQVKKEHLTLDEEA 492



 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 57/242 (23%), Positives = 86/242 (35%), Gaps = 36/242 (14%)

Query: 46   AAKARAEALDHVLFVGPPGLGKTTLAQVVAR---ELGVNFRSTSGPVIAK---------- 92
              K     +DH LFVG PG GKTT+A+++      LGV   +    V  K          
Sbjct: 885  MGKKFQGVVDHYLFVGNPGTGKTTVARIMGNIFYSLGVLPSNRLLEVTRKDLVEGYVGQT 944

Query: 93   AGDLAALLTNLEDRDVLFIDEI-----HRLSIIVEEILYPAMEDFQLDLMVGEGPSARSV 147
            A   A ++       V FIDE                + P + D++  ++         +
Sbjct: 945  ATKTARVVKRAVGG-VFFIDEAYSLMGDNFGQEATNTILPMLLDYKGKMV--------CI 995

Query: 148  KINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEA 207
                 R       T  G     L+ RF   I    Y  ++L  I +   K   L +T EA
Sbjct: 996  AAGYPREIRQWIDTNSG-----LESRFTKVIHFEDYNPDELAQIFRMKVKKDKLTLTPEA 1050

Query: 208  ACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRY 267
              E AMR   T  +  R  R   +  EV +     ++   + L R  +++  FD      
Sbjct: 1051 --ENAMRVYFT-DLYNRRERNFANAREVNNYFDRVKKNQSSRL-RHEMERPDFDPASYSI 1106

Query: 268  LT 269
            L 
Sbjct: 1107 LL 1108



 Score = 40.1 bits (92), Expect = 0.47,   Method: Composition-based stats.
 Identities = 39/256 (15%), Positives = 75/256 (29%), Gaps = 39/256 (15%)

Query: 27  LEEFTGQVEACSNLKVF----------IEAAKARAEALD-HVLFVGPPGLGKTTLAQVVA 75
           L EF G     + ++            +E   A AE    H++  G PG GKTT+A  + 
Sbjct: 572 LNEFVGMDSVKAEIRALANKIAMDKEMMEMGIADAEVTPVHIVLTGNPGTGKTTIACKLG 631

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRD--------------VLFIDEIHRLSII- 120
                     +  V+ K  +   L++  ++                +LFIDE + L  I 
Sbjct: 632 EVFKAIGLLPTDKVVEK--ERKHLISTYQNETAKLVDKACDEAMGGILFIDEAYALMPIS 689

Query: 121 ---VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
               ++       +  +  MV +      +               V       + RF   
Sbjct: 690 AGGSKDQTGVEAVEALMTRMVKDAGKFVVICAG----YRAEMEEFVNNANPGFRRRFSNF 745

Query: 178 IRLNFYEIEDLKTI----VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
           + +  Y  + L  I    +++   +      +     +           G     V+ F 
Sbjct: 746 LHIEDYSADQLICIYRSLIRKKGNILTPDAEEMLIKLVDEMVTSKDENFGNAGEMVKLFE 805

Query: 234 EVAHAKTITREIADAA 249
           +    +        A 
Sbjct: 806 KTKARRANRLAQLHAG 821


>gi|37527701|ref|NP_931046.1| DNA polymerase III subunits gamma and tau [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36787136|emb|CAE16213.1| DNA polymerase III subunit Tau [Contains: DNA polymerase III
           subunit gamma] [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 658

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 59/285 (20%), Positives = 91/285 (31%), Gaps = 65/285 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+   +  GQ    + L     A       L H  LF G  G+GKTT+A++ A+ L   
Sbjct: 11  RPQIFSDVIGQEYILTAL-----ANGLAHGRLHHAYLFSGTRGVGKTTIARLFAKGLNCE 65

Query: 82  F------------------------RSTSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                             K  D   LL N++         V  I
Sbjct: 66  TGITDKPCGKCVNCLEIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSRHSFNALLKTLEE------------------PPEHVKFLLATTDPQKLPVTIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L   +I  +   ++R  K   +   + A   +A  + G+ R A  L     D
Sbjct: 168 SRC-LQFHLKSLDIGQISDQLERILKAEHIESDNRARQLLARAADGSMRDALSL----TD 222

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFG 276
            A       +T EI   +L+   +D    D+  L  +  + R  G
Sbjct: 223 QAIAIGQGLVTTEIV--SLMLGTLD----DEQPLSIIEALIRADG 261


>gi|295090291|emb|CBK76398.1| ATP-dependent metalloprotease FtsH [Clostridium cf. saccharolyticum
           K10]
          Length = 620

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 58/246 (23%), Positives = 95/246 (38%), Gaps = 26/246 (10%)

Query: 25  RTLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +T  +  GQ EA   LK  +       + A+  A      L VGPPG GKT LA+ VA E
Sbjct: 167 KTFADVAGQEEAKDALKEIVDFLHNPGKYAEIGATLPKGALLVGPPGTGKTLLAKAVAGE 226

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
             V F S SG           A  +  L     ++   ++FIDEI  +    +  +    
Sbjct: 227 AHVPFFSISGSEFVEMFVGMGAAKVRDLFKQANEKAPCIVFIDEIDTIGKKRDGNMGGND 286

Query: 130 E-DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           E +  L+ ++ E       K       ++AAT R   L   L    RF   I +   ++ 
Sbjct: 287 EREQTLNQLLTEMDGFDGRKG----VVILAATNRPESLDKALLRPGRFDRRIPVELPDMR 342

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++  AK   +  T     +    +R T   +G  L  + + A +   +   + ++
Sbjct: 343 GREAILRVSAKNVKVDET----VDYNEIARATSGASGADLANIVNEAALRAVRMGRKTVS 398

Query: 247 DAALLR 252
              L  
Sbjct: 399 QQDLEE 404


>gi|283796874|ref|ZP_06346027.1| DNA polymerase III, gamma and tau subunit [Clostridium sp. M62/1]
 gi|291075280|gb|EFE12644.1| DNA polymerase III, gamma and tau subunit [Clostridium sp. M62/1]
 gi|295089888|emb|CBK75995.1| DNA polymerase III, subunits gamma and tau [Clostridium cf.
           saccharolyticum K10]
          Length = 555

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 80/224 (35%), Gaps = 21/224 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP +  +  GQ      LK  I + +         LF G  G GKT++A++ AR +    
Sbjct: 11  RPVSFGDVKGQDPIVKTLKNQITSGRIGHAY----LFCGTRGTGKTSIAKIFARAVNCEH 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P      +    +      +V+ ID      +  +  I E++ YP  E      +
Sbjct: 67  PVDGSPCNEC--ETCRHIMEGSSLNVVEIDAASNNGVENIREIREQVQYPPTEGTYRVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++   S    I ATT V  +   +  R           ++ +
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPSYVIFILATTEVHKIPITILSRCQRYDFKRI-SLDTI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
              ++   +   + V + A   +A  + G+ R A  LL +   F
Sbjct: 184 ADRLRELTEAEHIGVEERALRYVAKAADGSMRDALSLLDQCAAF 227


>gi|282882939|ref|ZP_06291544.1| DNA polymerase III, gamma and tau subunit [Peptoniphilus lacrimalis
           315-B]
 gi|281297350|gb|EFA89841.1| DNA polymerase III, gamma and tau subunit [Peptoniphilus lacrimalis
           315-B]
          Length = 577

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 83/230 (36%), Gaps = 21/230 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP    +  GQ     +LK  I       E     LF G  G GKT+ A++ AR
Sbjct: 4   ALYRKYRPLDFNQMIGQEALVMSLKNQI----KNNEVSHAYLFSGTRGTGKTSAAKIFAR 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +         P   K     ++L N    DV+ +D      +  +  + ++++YP    
Sbjct: 60  AVNCEHPIDGNP-CNKCKSCLSILNNTSV-DVVEMDAASNNGVDDIRDLKDKVIYPPTFL 117

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             + ++   S    I ATT    +   +  R         
Sbjct: 118 KYKVYIIDEVHMLSKGAFNALLKILEEPPSHLIFILATTEKEKIPATILSRTQKFEFSRV 177

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
             +E++   ++  +++ G  + DE    IA  S G  R A  +L ++  F
Sbjct: 178 -SLENIIKRLKYISQMEGKTLDDEVYQLIAKTSDGAMRDALSVLDQLLSF 226


>gi|238027056|ref|YP_002911287.1| DNA polymerase III subunits gamma and tau [Burkholderia glumae
           BGR1]
 gi|237876250|gb|ACR28583.1| DNA polymerase III, subunits gamma and tau [Burkholderia glumae
           BGR1]
          Length = 861

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 84/229 (36%), Gaps = 27/229 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+      GQ      L   ++  +     L H  LF G  G+GKTTL+++ A+ L   
Sbjct: 11  RPKDFASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAMEDFQL 134
              TS P     G   A     E R V +++        +  ++ ++E  +Y  ++    
Sbjct: 66  TGVTSQP----CGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             M+ E             ++++        I ATT    +   +  R  +   L     
Sbjct: 122 VYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPA 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
             +   ++R      +A   +A   +A  ++G+ R A  L  +   ++ 
Sbjct: 181 GHIVMHLERILGEERVAFEPQALRLLARAAQGSMRDALSLTDQAIAYSA 229


>gi|283798857|ref|ZP_06348010.1| cell division protein FtsH [Clostridium sp. M62/1]
 gi|291073395|gb|EFE10759.1| cell division protein FtsH [Clostridium sp. M62/1]
          Length = 620

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 58/246 (23%), Positives = 95/246 (38%), Gaps = 26/246 (10%)

Query: 25  RTLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +T  +  GQ EA   LK  +       + A+  A      L VGPPG GKT LA+ VA E
Sbjct: 167 KTFADVAGQEEAKDALKEIVDFLHNPGKYAEIGATLPKGALLVGPPGTGKTLLAKAVAGE 226

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
             V F S SG           A  +  L     ++   ++FIDEI  +    +  +    
Sbjct: 227 AHVPFFSISGSEFVEMFVGMGAAKVRDLFKQANEKAPCIVFIDEIDTIGKKRDGNMGGND 286

Query: 130 E-DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           E +  L+ ++ E       K       ++AAT R   L   L    RF   I +   ++ 
Sbjct: 287 EREQTLNQLLTEMDGFDGRKG----VVILAATNRPESLDKALLRPGRFDRRIPVELPDMR 342

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++  AK   +  T     +    +R T   +G  L  + + A +   +   + ++
Sbjct: 343 GREAILRVSAKNVKVDET----VDYNEIARATSGASGADLANIVNEAALRAVRMGRKTVS 398

Query: 247 DAALLR 252
              L  
Sbjct: 399 QQDLEE 404


>gi|219111867|ref|XP_002177685.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|300681035|sp|B7FSL4|LONM_PHATC RecName: Full=Lon protease homolog, mitochondrial; Flags: Precursor
 gi|217410570|gb|EEC50499.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 882

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 62/269 (23%), Positives = 102/269 (37%), Gaps = 38/269 (14%)

Query: 13  SQEDADISLLRPRTLE-EFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTL 70
           ++E+ DI   R +TL+ +  G  +    +  FI   K R      +L   GPPG GKT++
Sbjct: 386 TEENFDIQKAR-KTLDRDHYGLDDVKDTILEFIAIGKLRGSVQGKILCLSGPPGTGKTSI 444

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNL----------------EDRDVLFIDEI 114
           A+ VA  LG  F   S   ++   ++                           V+ IDEI
Sbjct: 445 AKSVADALGRQFFRFSVGGLSDVSEIKGHRRTYIGAMPGKLIQCLKATGTTNPVVLIDEI 504

Query: 115 HRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
            +L        +  + E+L P       D           V +++S+   I     +  +
Sbjct: 505 DKLGTGFRGDPASALLEVLDPGQNSTFRD-------YFLDVPVDISKVLFICTANELERI 557

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
             PL DR  + IRL+ Y++ +   I ++   L   ++ D     +    + T      L 
Sbjct: 558 PGPLLDRMEV-IRLSGYDLPEKVAIAEQY--LVPKSMRDSGLLGVPETLKLTIDAVRSLA 614

Query: 227 RRVRDFAEVAH-AKTITREIADAALLRLA 254
           R     A V + AK I R     AL  +A
Sbjct: 615 RWYAREAGVRNLAKYIDRITRKLALQVVA 643


>gi|161611320|ref|YP_162596.2| DNA polymerase III subunits gamma and tau [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|283775348|gb|AAV89485.2| DNA polymerase III, subunits gamma and tau [Zymomonas mobilis
           subsp. mobilis ZM4]
          Length = 628

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 52/272 (19%), Positives = 91/272 (33%), Gaps = 30/272 (11%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M+D   L +             RP+   +  GQ      L   I    AR       L  
Sbjct: 1   MVDSSSLATP----YRVLARKYRPQKFSDLIGQDAMVRTLGNAI----ARDRLAHAFLLT 52

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGP-VIAKAGDLAALLTNLEDR--DVLFID----- 112
           G  G+GKT+ A+++A+ L    +   G   I   G+  A     E R  DV+ +D     
Sbjct: 53  GVRGVGKTSTARLIAKALNCVGKDGHGGMTIDPCGECEACRAIAEGRHIDVVEMDAASHT 112

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRV 163
            +  +  IVE + Y ++       ++ E             ++++   +    + ATT +
Sbjct: 113 GVDDIRDIVESVRYASVSARFKVYIIDEVHMLSKSAFNALLKTLEEPPAHVKFLFATTEI 172

Query: 164 GLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAG 223
             +   +  R      L       L     +  +L  +   +EA   IA  + G+ R   
Sbjct: 173 NKVPITVLSRCQ-RFDLRRISTATLTDYFSKVVQLEQVEAEEEALAMIAKAAEGSVRDGL 231

Query: 224 RLLRRVRDFAEVAHAKTITREIADAALLRLAI 255
            +L    D A    + +I        L     
Sbjct: 232 SIL----DQAIAHSSGSILAADVREMLGLSDR 259


>gi|75758637|ref|ZP_00738755.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|74493896|gb|EAO56994.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
          Length = 431

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 48/295 (16%), Positives = 97/295 (32%), Gaps = 27/295 (9%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M  + L     ++        RP++++E+ G  +    LK  + +          +L  G
Sbjct: 1   MSNDKL---ESNERLNITRRYRPKSMDEYKGNED----LKKAVFSWLNNINKPQAILLKG 53

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRD---VLFIDEIH--- 115
             G GKT++A++VA+E     R        +      +   +E  +   ++ + EI+   
Sbjct: 54  TTGGGKTSMARIVAKEYLCEDRDEEKGACGECYSCKMMDDYIETGNTDGLMGLREINASK 113

Query: 116 -----RLSIIVEEILYPAMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATT 161
                 ++ ++EE  YP  +      ++ E             + V+        +  TT
Sbjct: 114 DSGLTAINSLLEEAQYPNPDGSWKIYILDECHRISIPAQNSLLKLVEEPPENVLFMFCTT 173

Query: 162 RVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRI 221
               + + L +R  I + +     E L  I+       G++   +    I  RS    R 
Sbjct: 174 DPDKMLDTLLNRCNIKLDVKKPSEEQLTQILLDICVKEGISYDRKGLSLIVDRSELVIRQ 233

Query: 222 AGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFG 276
           A   L  V    E A  + +++                  + D      I     
Sbjct: 234 ALMDLENVIVQTESAEHRFVSKIFDKHPNSLYFDFYRALLKHDTHQFVSIIHKVK 288


>gi|229815425|ref|ZP_04445757.1| hypothetical protein COLINT_02473 [Collinsella intestinalis DSM
           13280]
 gi|229808958|gb|EEP44728.1| hypothetical protein COLINT_02473 [Collinsella intestinalis DSM
           13280]
          Length = 635

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 79/187 (42%), Gaps = 23/187 (12%)

Query: 26  TLEEFTGQVEACSNLKV---FIEAAKARAEA----LDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ EA  +LK    F+E  +   E         L VGPPG GKT LA+ VA E 
Sbjct: 183 TFKDVAGQEEAKESLKEVVDFLENPQRYEEIGAKLPRGALLVGPPGTGKTLLAKAVAGEA 242

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG           A  +  L    +++   ++FIDEI  +    +   +   +
Sbjct: 243 GVPFFSISGSEFVEMFVGRGAAKVRDLFKQAKEKAPCIVFIDEIDTIGKKRDGGGFSGND 302

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E     + K       ++AAT R   L   L    RF   + +   ++ 
Sbjct: 303 EREQTLNQLLTEMDGFDNQKG----IVVLAATNRPDSLDAALLRPGRFDRRVPVELPDLA 358

Query: 187 DLKTIVQ 193
             K I++
Sbjct: 359 GRKAILE 365


>gi|307108607|gb|EFN56847.1| hypothetical protein CHLNCDRAFT_51635 [Chlorella variabilis]
          Length = 694

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 64/254 (25%), Positives = 94/254 (37%), Gaps = 30/254 (11%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAK-------ARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           P   ++  G  EA   LK  ++  K         A     VL VGPPG GKT LA+ VA 
Sbjct: 146 PVMFDDVAGVDEAKEELKEIVDFLKFPDKFTRLGARPPSGVLLVGPPGTGKTLLARAVAG 205

Query: 77  ELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPA 128
           E  V F S +            A  +  L          ++FIDEI  ++   +  L   
Sbjct: 206 EADVPFFSIAASEFVELYVGMGAMRVRELFATARKEAPAIVFIDEIDAVAKGRDSRLRSV 265

Query: 129 MED---FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183
             D     L+ ++ E     + + NL     IAAT R  +L   L    RF   + +   
Sbjct: 266 GNDEREQTLNQLLTELDGFDTHRDNL--VICIAATNRPDVLDAALLRPGRFDRRVSVERP 323

Query: 184 EIEDLKTIV-----QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           + +  + I+     QRG  L      D+ A   A  +  T      L+      A   + 
Sbjct: 324 DKQGREEILRVHINQRGLPLGEDVRVDQLA---AQTTGFTGADLANLVNEAALLAGRGNK 380

Query: 239 KTITREIADAALLR 252
             +T    D A+LR
Sbjct: 381 GLVTNADFDNAVLR 394


>gi|304414791|ref|ZP_07395750.1| DNA polymerase III subunits gamma and tau [Candidatus Regiella
           insecticola LSR1]
 gi|304283143|gb|EFL91556.1| DNA polymerase III subunits gamma and tau [Candidatus Regiella
           insecticola LSR1]
          Length = 655

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 54/259 (20%), Positives = 83/259 (32%), Gaps = 59/259 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+      GQ    + L     A       L H  L  G  G+GKT++A+++A+ L  +
Sbjct: 11  RPQVFSAVVGQQHVLTAL-----ANGLLLGRLHHAYLLSGTRGVGKTSIARLLAKGLNCD 65

Query: 82  FRST------------------------SGPVIAKAGDLAALLTNLE------DRDVLFI 111
              T                              K  D   LL N++         V  I
Sbjct: 66  KEITATPCGKCISCQEIEQGRFIDLIEIDAASRTKVEDTRELLDNVQYAPVRGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                    +    I ATT    L   + 
Sbjct: 126 DEVHMLSRHSFNALLKTLEE------------------PPAHVKFILATTDPQKLPITVL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L    IE ++T +++  +   +A    A   +A  + G+ R A  L     D
Sbjct: 168 SRC-LQFHLQALNIEQIRTQLEKVLQAEQVAYDSRALHLLAKAADGSLRDALSL----TD 222

Query: 232 FAEVAHAKTITREIADAAL 250
            A       +T E     L
Sbjct: 223 QAIAMGQGQVTTETVSQML 241


>gi|168184359|ref|ZP_02619023.1| DNA polymerase III, subunits gamma and tau [Clostridium botulinum
           Bf]
 gi|182672504|gb|EDT84465.1| DNA polymerase III, subunits gamma and tau [Clostridium botulinum
           Bf]
          Length = 471

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 87/235 (37%), Gaps = 26/235 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPR  ++  GQ     N K+ +   +         LF G  G GKTT A++ ++ +  + 
Sbjct: 7   RPRFFKDVVGQ---GENTKILLNQIRT-GHIGHAYLFCGNRGSGKTTTARIFSKAVNQHD 62

Query: 83  R-STSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDL 136
                   ++K  D    +      D++ +D      I  +  I+E+  Y   E      
Sbjct: 63  NGEPLDNELSKKIDAGNCI------DIVELDAASHNGIEDIRNIIEQAQYAPSECKYRVF 116

Query: 137 MVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ++ E             + ++        I ATT    L   +  R          ++ D
Sbjct: 117 IIDEVHMLSISAVNAFLKVLEEPPKNVIFILATTDPQKLPITVLSRCQ-RFDFKRIDVTD 175

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           +   ++   +   + + +++   I++ + G  R A  +L +VR   E+ ++   T
Sbjct: 176 IFNRLKYICEHEKIKIDNKSLKLISIVADGAMRDAISILDQVRTMEEITYSNVTT 230


>gi|148260992|ref|YP_001235119.1| DNA polymerase III subunits gamma and tau [Acidiphilium cryptum
           JF-5]
 gi|146402673|gb|ABQ31200.1| DNA polymerase III, subunits gamma and tau [Acidiphilium cryptum
           JF-5]
          Length = 614

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 54/328 (16%), Positives = 91/328 (27%), Gaps = 75/328 (22%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T ++  GQ      L+     A A        +  G  G+GKTT A+++AR L
Sbjct: 47  ARKYRPTTFDDLIGQDGLVRTLR----NAFAMNRIAHAFMLTGVRGVGKTTTARILARAL 102

Query: 79  GV-----------------------------NFRSTSGPVIAKAGDLAALLTNLEDRD-- 107
                                          +             D+  ++     R   
Sbjct: 103 NCTGADGQGGPTPDPCGVCDNCVAILADRHPDVVEMDAASNTGVDDVREIIEATRFRPMI 162

Query: 108 ----VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
               V  +DE+H LS      L   +E+                         + ATT +
Sbjct: 163 ARTKVFIVDEVHMLSRNAFNALLKTLEE------------------PPPHVKFVFATTEI 204

Query: 164 GLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAG 223
             +   +  R      L    ++ L     R A+   +AV   A   +A  + G+ R   
Sbjct: 205 RKVPITVLSRCQ-RFDLKRVPVDVLAAHFARIAEKEAVAVEGGALDAVARAADGSVRDGL 263

Query: 224 RLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIE 283
            LL +               +        L  D +G    D   +  +      G     
Sbjct: 264 SLLDQA----------IARADEGAPVTAELVADMLGL--ADRGMVFDLLEAVAAGDP--- 308

Query: 284 TISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
             +  L     A E   +P ++ Q  + 
Sbjct: 309 --AGALGVMDRAHEAGADPVLVMQDLLG 334


>gi|121602189|ref|YP_989487.1| DNA polymerase III subunits gamma and tau [Bartonella bacilliformis
           KC583]
 gi|120614366|gb|ABM44967.1| DNA polymerase III, subunits gamma and tau [Bartonella
           bacilliformis KC583]
          Length = 634

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 49/308 (15%), Positives = 89/308 (28%), Gaps = 58/308 (18%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
              +         RP+   +  GQ      L    EA +         +  G  G+GKTT
Sbjct: 2   PTATPYRVLARKYRPQNFSDLIGQETMVRTLTNAFEAGRIAQAW----ILTGIRGVGKTT 57

Query: 70  LAQVVARELGVNFRSTSGPVI----------------------------AKAGDLAALLT 101
            A+++AR L    +  + P                                  D+  ++ 
Sbjct: 58  TARILARALNYETKDINKPTTVFNTLGEHCTQIIEGRHIDVIEMDAASHTGIDDIREIIE 117

Query: 102 NLE------DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFT 155
            +          V  IDE+H LS      L   +E+                        
Sbjct: 118 QIRYCPVSARYKVYIIDEVHMLSTQAFNGLLKTLEE------------------PPPHVK 159

Query: 156 LIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRS 215
            I ATT +  +   +  R      L   E   L   + + A+   + V ++A   IA  +
Sbjct: 160 FIFATTEIRKVPITILSRCQ-RFDLRRVESSALVAHLHKIAQHEKVEVQEQALSIIARAA 218

Query: 216 RGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNF 275
            G+ R A  +  +    +      T  R +   A  +  I  +    +    ++ +    
Sbjct: 219 EGSVRDALSIFDQAIAHSNGKINATAVRTMLGLA-DQARIIDLFDYVMKGDIVSALHELR 277

Query: 276 GGGPVGIE 283
                G +
Sbjct: 278 SQYDAGAD 285


>gi|116622271|ref|YP_824427.1| DNA polymerase III subunits gamma and tau [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116225433|gb|ABJ84142.1| DNA polymerase III, subunits gamma and tau [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 568

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 57/341 (16%), Positives = 100/341 (29%), Gaps = 53/341 (15%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP++  +   Q    + L    E A A+       +F G  G GKTT+A+++AR L
Sbjct: 6   ARKYRPQSFADVICQEHVKTTL----ENAIAQHRIAHGYIFSGQRGTGKTTIARILARCL 61

Query: 79  GV------------------------NFRSTSGPVIAKAGDLAALLTNLE------DRDV 108
                                     +             ++  L  N+          +
Sbjct: 62  NCVQGPTATPCGVCASCKEISEGGTVDVIEIDAASNRGINEMRELRENVRYQPARDRYKI 121

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
             IDE H+++      L   +E+     +     +  S KI  +  +     +   +   
Sbjct: 122 FIIDEAHQITNEAFNALLKTIEEPPEWAVFVLCTT-ESHKIPATIASRCQHFSFRSVDFQ 180

Query: 169 PLQDRFGIPIRLNFYEIEDLKTI---------VQRGAKLTGLAVTDEAACEIAMRSRGTP 219
            L DR          E +              V+        A+    A   A   R   
Sbjct: 181 ELVDRMSWICGQEGIEADAEALAVLAAAGEGSVRDSLSALDQAIACCGAKITAPEVRALL 240

Query: 220 -RIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD-QLDLRYLTMIARNFGG 277
              +   L +V + A  A    +  E+ D  L R   +   F  +L   +  ++     G
Sbjct: 241 GAFSLESLEKVTE-ALAAGESRMMLEVVDE-LERNGQNLQHFSRELSRYFRNLLVTRIAG 298

Query: 278 GPVGIETISAGLSEPRDAI-----EDLIEPYMIQQGFIQRT 313
               +   SA   E    I     E+ +  Y+     I R 
Sbjct: 299 ADTRLVAASAAQREKLGHIAGQFSEEDLSRYLQLSLDIFRD 339


>gi|320590805|gb|EFX03248.1| mitochondrial serine protease [Grosmannia clavigera kw1407]
          Length = 1161

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 51/249 (20%), Positives = 89/249 (35%), Gaps = 36/249 (14%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI   K R      +L FVGPPG+GKT++ + +AR L   +   S
Sbjct: 603 EDHYGLKDVKDRILEFIAVGKLRGTVEGKILCFVGPPGVGKTSIGKSIARALNRQYYRFS 662

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDEI ++    +        
Sbjct: 663 VGGLTDVAEIKGHRRTYVGALPGRVIQALKKCQTENPLILIDEIDKIGKGYQGDPSSALL 722

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V ++LS+   +        +  PL DR  + IRL+ 
Sbjct: 723 ELLDPEQNSSFLD-------HYMDVPVDLSKVLFVCTANMTDTIPRPLLDRMEV-IRLSG 774

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  ++ + I +R       A  + A  + A  +     I   +    R+       K I 
Sbjct: 775 YVSDEKRAIAER---YLAPAAKEMAGLKNADVTLSDSAIEELIKSYCRESGVRNLKKQIE 831

Query: 243 REIADAALL 251
           +    +AL 
Sbjct: 832 KVYRKSALK 840


>gi|306823770|ref|ZP_07457144.1| DNA polymerase III subunits gamma and tau [Bifidobacterium dentium
           ATCC 27679]
 gi|309802091|ref|ZP_07696201.1| DNA polymerase III, subunit gamma and tau [Bifidobacterium dentium
           JCVIHMP022]
 gi|304552768|gb|EFM40681.1| DNA polymerase III subunits gamma and tau [Bifidobacterium dentium
           ATCC 27679]
 gi|308221292|gb|EFO77594.1| DNA polymerase III, subunit gamma and tau [Bifidobacterium dentium
           JCVIHMP022]
          Length = 851

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 75/232 (32%), Gaps = 29/232 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     RP T +   GQ +    L   ++  K     L H  LF GP G GKT+ A+++A
Sbjct: 4   ALYRRYRPDTFDGVIGQDQVTVPLMRALDEGK-----LTHAYLFSGPRGCGKTSSARILA 58

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDR----DVLFIDEIHRLSIIVEEILY----- 126
           R +        GP     G+  +            DV+ ID      +     L      
Sbjct: 59  RCVNCEK----GPTSHPCGECESCRDLATGGPGSIDVVEIDAASHNGVDDARELRERAGF 114

Query: 127 -PAMEDFQLDLMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
            PA + +++ ++         G     + V+        I ATT    +   ++ R    
Sbjct: 115 APARDRYKIFILDEAHMVTPQGFNALLKIVEEPPEHVMFIFATTEPDKVIGTIRSR-THH 173

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
                   E +   ++R      +               G+ R    +L ++
Sbjct: 174 YPFRLVPQEVMGPYLERICSDEHIEAEPGVLRLAMRAGGGSVRDTLSVLDQL 225


>gi|289423791|ref|ZP_06425586.1| cell division protease FtsH [Peptostreptococcus anaerobius 653-L]
 gi|289155830|gb|EFD04500.1| cell division protease FtsH [Peptostreptococcus anaerobius 653-L]
          Length = 645

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 53/241 (21%), Positives = 88/241 (36%), Gaps = 24/241 (9%)

Query: 27  LEEFTGQVEACSNL----KVFIEAAK---ARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
            ++  GQ EA   L        E AK     A+     L VGPPG GKT LA+ VA E G
Sbjct: 162 FDDVAGQDEAKEALTEIVDFLHEPAKYTAIGAKMPKGALLVGPPGTGKTLLAKAVAGEAG 221

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMED 131
           V F S SG           A  +  L    +++   ++FIDEI  +    +       ++
Sbjct: 222 VPFFSISGSEFVEMFVGMGASRVRDLFKQAKEKAPCIVFIDEIDAIGKKRDGAFGGGNDE 281

Query: 132 FQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            +  L  ++ E     +         ++AAT R   L   L    RF   I +   +++ 
Sbjct: 282 REQTLNQLLSEMDGFENGIG----IVMLAATNRPDSLDKALLRPGRFDRRIPVELPDLKG 337

Query: 188 LKTIVQRGAK-LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
            ++I++  AK +      D      A        +A  +         +        ++ 
Sbjct: 338 RESILKVHAKDVKKSEEIDYNQVARATSGASGAELANIVNEAALRAVRMKREGIKQEDLE 397

Query: 247 D 247
           +
Sbjct: 398 E 398


>gi|255525864|ref|ZP_05392792.1| ATP-dependent metalloprotease FtsH [Clostridium carboxidivorans P7]
 gi|255510428|gb|EET86740.1| ATP-dependent metalloprotease FtsH [Clostridium carboxidivorans P7]
          Length = 595

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 54/268 (20%), Positives = 100/268 (37%), Gaps = 27/268 (10%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGK 67
           E++    +R     +  G  EA  N++  IE  K         A+    ++  GPPG GK
Sbjct: 159 EESKDVKIR---FSDVAGSEEAKENMQDIIEFLKNPKKFEDFGAKIPKGIILYGPPGTGK 215

Query: 68  TTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSI 119
           T LA+ +A E G  F  TSG       V   A  +  L          ++FIDEI  +  
Sbjct: 216 TLLAKALAGETGSEFIPTSGSYFIEKYVGVGASRVRKLFNKARKNSPAIIFIDEIDAIGG 275

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIP 177
                   + +   L+ ++ E         +     ++AAT R+ +L + L    RF   
Sbjct: 276 KRGSGKDTSEDAKTLNQLLVEMDGFN----DKENVIVVAATNRLDMLDDALLRAGRFDRH 331

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
           + +   ++     I++  +K   L+ + +           +      ++     +A   +
Sbjct: 332 VMVGLPDLNARYKILKVHSKNKPLSPSVDLFQIAKQTVYMSGADLANVINEASIYAIKEN 391

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDL 265
              IT    D A+ ++     G ++ D 
Sbjct: 392 YSEITLNHIDKAMNKIIA---GDEKKDR 416


>gi|325982256|ref|YP_004294658.1| DNA polymerase III, subunits gamma and tau [Nitrosomonas sp. AL212]
 gi|325531775|gb|ADZ26496.1| DNA polymerase III, subunits gamma and tau [Nitrosomonas sp. AL212]
          Length = 537

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 52/286 (18%), Positives = 84/286 (29%), Gaps = 64/286 (22%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTL 70
           +SQ        RPR   E TGQ      L   +E        L H  L  G  G+GKTT+
Sbjct: 1   MSQTQVLARKWRPRNFTELTGQEHVVRALTNALE-----QNRLHHAYLLTGTRGVGKTTI 55

Query: 71  AQVVARELGVNFRST------------------------SGPVIAKAGDLAALLTNL--- 103
           A+++A+ L      T                              +  ++  LL N    
Sbjct: 56  ARILAKSLNCETGITATPCGTCTTCVQIDSGSFIDLVELDAASNTQVDNMRELLENALYA 115

Query: 104 ---EDRDVLFIDEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIA 158
                  +  IDE+H LS      +   +E+    +  ++      +     LSR     
Sbjct: 116 PTCGRYKIYIIDEVHMLSKSAFNAMLKTLEEPPAHVKFILATTDQQKIPITVLSRCLQFN 175

Query: 159 ATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGT 218
                                        +   +++      +     +   +A  ++G+
Sbjct: 176 LKQIPQP---------------------QITDHLKKILAQEKIPCDILSLQLVARAAQGS 214

Query: 219 PRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLD 264
            R A  LL    D A    A  I        L  +    + FD LD
Sbjct: 215 MRDALSLL----DQAIAFGAGKIEEASVRDMLGIIDHSYL-FDLLD 255


>gi|195128025|ref|XP_002008467.1| GI13511 [Drosophila mojavensis]
 gi|193920076|gb|EDW18943.1| GI13511 [Drosophila mojavensis]
          Length = 962

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 41/242 (16%), Positives = 80/242 (33%), Gaps = 37/242 (15%)

Query: 32  GQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           G  +    +  FI  +  +      +L F GPPG+GKT++A+ +AR L   +   S   +
Sbjct: 473 GMDDIKKRILEFIAVSSLKGTTQGKILCFHGPPGVGKTSIAKSIARALNREYFRFSVGGM 532

Query: 91  AKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE--------EILY 126
               ++                        +  ++ IDE+ ++    +        E+L 
Sbjct: 533 TDVAEIKGHRRTYVGAMPGKLIQCLKKTKTENPLVLIDEVDKIGKGYQGDPSSALLELLD 592

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           P      LD           V ++LSR   I     V  +  PL+DR  +     +   E
Sbjct: 593 PEQNANFLD-------HYLDVPVDLSRVLFICTANVVDTIPEPLRDRMELIEMSGYVAEE 645

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
            +       A+   +    +       +   T      L+R     + V + +    ++ 
Sbjct: 646 KVA-----IARQYLIPQAMKDCGLTEKQVNITEDALNMLIRSYCRESGVRNLQKQIEKVI 700

Query: 247 DA 248
             
Sbjct: 701 RK 702


>gi|111220099|ref|YP_710893.1| DNA polymerase III subunits gamma and tau [Frankia alni ACN14a]
 gi|111147631|emb|CAJ59286.1| DNA polymerase III subunit gamma (partial match) [Frankia alni
           ACN14a]
          Length = 1016

 Score = 59.7 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 43/236 (18%), Positives = 75/236 (31%), Gaps = 23/236 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A  +  RP T  +  GQ      L+  +   +     L H  LF GP G GKT+ A+++A
Sbjct: 4   ALYNRYRPATFAQVVGQEHVTDALRKALRTGR-----LHHAYLFSGPRGCGKTSSARILA 58

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAM 129
             L         P      D    +      DV  ID      +     L       PA 
Sbjct: 59  ASLNCE--QGPTPEPCGVCDECVGIRTGASMDVTEIDAASHGLVDDARDLRERAFFAPAS 116

Query: 130 EDFQLDLMVGE--------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
             F++ ++               + V+        + ATT    +   ++ R        
Sbjct: 117 ARFKVFVVDEAHMVTAAAFNALLKVVEEPPPYLKFVFATTEPDKVIPTIRSR-THHYAFR 175

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                 L+T +    +  G+ V       +     G+ R +  +L ++   A+   
Sbjct: 176 LVPPGVLRTHLASICEQEGVTVDPTVLPLVVRAGAGSVRDSLSVLDQLLAGADDDG 231


>gi|70949672|ref|XP_744225.1| replication factor C3 [Plasmodium chabaudi chabaudi]
 gi|56524090|emb|CAH80967.1| replication factor C3, putative [Plasmodium chabaudi chabaudi]
          Length = 328

 Score = 59.7 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 74/213 (34%), Gaps = 12/213 (5%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +   RP  L +     +  S ++ F+E  +     L H+L  GPPG GKT+    V +EL
Sbjct: 1   VEKYRPGVLNDIISHEQVISTIRKFVEKGE-----LPHLLLHGPPGTGKTSTILAVCKEL 55

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138
             + RS+    +  + D    +   + +   F +  +  + I E      +   + D M 
Sbjct: 56  YGDSRSSFVLELNASDDRGITVVREQIKT--FAESKNHYN-ICERTSLKLIILDEADHMT 112

Query: 139 --GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA 196
              +    R ++              V  +T  +Q R          + E +       A
Sbjct: 113 FPAQNAMRRIMENYAKNVRFCLICNYVNKITPAIQSRC--TSFRFPLKEEYMLNKALDIA 170

Query: 197 KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           K   + +T      +    RG  R     L+ V
Sbjct: 171 KSENVNITKNGVESLIRVGRGDMRRILNCLQVV 203


>gi|303236721|ref|ZP_07323300.1| ATP-dependent metallopeptidase HflB [Prevotella disiens FB035-09AN]
 gi|302482889|gb|EFL45905.1| ATP-dependent metallopeptidase HflB [Prevotella disiens FB035-09AN]
          Length = 692

 Score = 59.7 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 66/284 (23%), Positives = 108/284 (38%), Gaps = 33/284 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ  A   ++  +E  K          +     L VGPPG GKT LA+ VA E 
Sbjct: 194 TFKDVAGQEGAKQEIQEIVEFLKNPQKYTELGGKIPKGALLVGPPGTGKTLLAKAVAGEA 253

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM- 129
           G  F S SG       V   A  +       +++   ++FIDEI  +     +   P+M 
Sbjct: 254 GAPFFSMSGSDFVEMFVGVGASRVRDAFRQAKEKAPSIIFIDEIDAVGRARSKN--PSMG 311

Query: 130 ----EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183
                +  L+ ++ E     +     S   ++AAT RV +L   L    RF   I ++  
Sbjct: 312 GNDERENTLNALLTEMDGFGTN----SGVIVLAATNRVDMLDKALLRAGRFDRQIHVDLP 367

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           ++ + K I Q   +   L        +I + +R TP  +G  +  V + A +  A+    
Sbjct: 368 DLPERKAIFQVHLRPLKLDNN----LDIDLLARQTPGFSGADIANVCNEAALIAARHNKP 423

Query: 244 EIADAA-LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETIS 286
            +     L  +     G ++          R       G  TIS
Sbjct: 424 SVGKQDFLDAVDRIIGGLEKKTKILTQTEKRTIALHEAGHATIS 467


>gi|225436170|ref|XP_002266075.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296090151|emb|CBI39970.3| unnamed protein product [Vitis vinifera]
          Length = 907

 Score = 59.7 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 56/250 (22%), Positives = 89/250 (35%), Gaps = 23/250 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAK------ARAEALDH-VLFVGPPGLGKTTLAQVVAREL 78
              +  G  EA   L+  ++  K             H VL  GPPG GKT +A+ +A E 
Sbjct: 393 KFSDVAGIEEAVEELQELVKYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 452

Query: 79  GVNFRSTSGPVIAKA------GDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAME 130
           GV F   +G    +         +  L    +     V+FIDEI  L+   + I   + +
Sbjct: 453 GVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFSESTD 512

Query: 131 DFQLDLMVGEGPSARSVKINLSRF------TLIAATTRVGLLTNPLQD--RFGIPIRLNF 182
                       +   + I L  F        + AT R+ LL   L    RF   IR+  
Sbjct: 513 HLYNAATQERETTLNQLLIELDGFDTGKGVIFLGATNRMDLLDPALLRPGRFDRKIRIRP 572

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
              +    I++  A+   LA + + +         T     +LL+     A     + I 
Sbjct: 573 PNAKGRLDILKVHARKVKLAESVDLSTYAQNLPGWTGARLAQLLQEAALVAVRKGHEAIL 632

Query: 243 REIADAALLR 252
           +   D A+ R
Sbjct: 633 QSDVDEAVDR 642


>gi|193212992|ref|YP_001998945.1| DNA polymerase III subunits gamma and tau [Chlorobaculum parvum
           NCIB 8327]
 gi|193086469|gb|ACF11745.1| DNA polymerase III, subunits gamma and tau [Chlorobaculum parvum
           NCIB 8327]
          Length = 390

 Score = 59.7 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 46/266 (17%), Positives = 90/266 (33%), Gaps = 25/266 (9%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP    + T Q      ++  +   +         +F G  G+GKTT A+V A+ +
Sbjct: 7   ARKYRPSRFADITAQEHITGTIQNSLRMGRVGHGY----IFSGLRGVGKTTAARVFAKAV 62

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRD------VLFIDEIHRLSII-----VEEILYP 127
                      + +  +      +  D D      +   D     S+       E + Y 
Sbjct: 63  NCQRMIEDPKYLKEVTEPCGECESCRDFDAGASLNISEFDAASNNSVDDIRLLRENVRYG 122

Query: 128 AMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
             +      ++ E             ++++        I ATT +  +   +  R     
Sbjct: 123 PQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQ-RF 181

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
                 I +++  +Q      G++  D+A   IA +++G+ R A  +L +V  FA  +  
Sbjct: 182 NFKRIPISEIQRQLQFICDAEGISADDDALQLIARKAQGSMRDAQSILDQVIAFAIDSEG 241

Query: 239 KTITREIADAALLRLAIDKMGFDQLD 264
           +   R    + LL    D+  F   D
Sbjct: 242 ERAIRYDKVSDLLSYIDDEHFFMVTD 267


>gi|307197073|gb|EFN78441.1| Spermatogenesis-associated protein 5 [Harpegnathos saltator]
          Length = 810

 Score = 59.7 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 59/258 (22%), Positives = 92/258 (35%), Gaps = 43/258 (16%)

Query: 26  TLEEFTGQVEACSNLKVFIE-------AAKARAEALD-HVLFVGPPGLGKTTLAQVVARE 77
              +  GQ +    LK  +E       A +    A    +L  GPPG  KT +A+ +A E
Sbjct: 544 RWSDIGGQKDLKLKLKQAVEWPLKFPGAFRKMGIAPPKGILMYGPPGCSKTMIAKALATE 603

Query: 78  LGVNFRSTSGPVI--AKAGDLAALLTNLEDR------DVLFIDEIHRL-----------S 118
             VNF +  GP +     G+    +  +  R       ++FIDEI  L            
Sbjct: 604 SKVNFLNIKGPELFSKWVGESEKAVREVFRRARQVAPSIVFIDEIDALGGERSSSSDGNG 663

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGI 176
             V+E +  A    +LD +   G             TL+AAT R   +   L    R   
Sbjct: 664 SNVQERVL-AQLLIELDGITALGS-----------VTLVAATNRPDKIDKALLRPGRLDR 711

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA--E 234
            I +   + E  + I     +   +A     A  + +    T      +       A  E
Sbjct: 712 IIYVGLPDEETRQEIFDIKLQKMPIAKEINVADLVCLTEGYTGAEIHAICHEAAMKALEE 771

Query: 235 VAHAKTITREIADAALLR 252
             +A+TIT++   AAL  
Sbjct: 772 NINAETITKQHFKAALAL 789


>gi|289580410|ref|YP_003478876.1| ATPase AAA [Natrialba magadii ATCC 43099]
 gi|289529963|gb|ADD04314.1| AAA ATPase central domain protein [Natrialba magadii ATCC 43099]
          Length = 514

 Score = 59.7 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 46/218 (21%), Positives = 80/218 (36%), Gaps = 12/218 (5%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
                RP TL E  G  +A   LK + E      +A   V+  G PG+GKT+ A  +A +
Sbjct: 4   WTETYRPTTLSEVRGNNKARDKLKEWAETWDDHQDA---VIVHGSPGVGKTSAAHALAND 60

Query: 78  LGVNFRSTSGPVIAKAGDLAALL-TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
           LG      +      A  +  +     +   +   +   RL I+ E   +    D+    
Sbjct: 61  LGWPVMELNASDSRGADVIERIAGEAAKSGTLTGGESGRRLVILDEADNFHGNADYG--- 117

Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA 196
             G     R VK       L+A       ++  L++        +      +  +++   
Sbjct: 118 --GSREVTRVVKSANQPIVLVA--NEFYDMSQSLRNACETIEFRDV-SKRSIVPVLRDIC 172

Query: 197 KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
           +   +   D+A  +IA  + G  R A   L+ V + AE
Sbjct: 173 RREDIEFEDDALQKIAEDTSGDLRSAVNDLQAVAEEAE 210


>gi|73987072|ref|XP_854391.1| PREDICTED: similar to Lon protease homolog, mitochondrial precursor
           (Lon protease-like protein) (LONP) (LONHs) isoform 1
           [Canis familiaris]
          Length = 960

 Score = 59.7 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 73/192 (38%), Gaps = 33/192 (17%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI  ++ R      +L F GPPG+GKT++A+ +AR L   +   S
Sbjct: 490 EDHYGMEDVKKRILEFIAVSQLRGSTQGKILCFYGPPGVGKTSIARSIARALNREYFRFS 549

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ ++    +        
Sbjct: 550 VGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLILIDEVDKIGRGYQGDPSSALL 609

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V ++LS+   I        +  PL+DR  + I ++ 
Sbjct: 610 ELLDPEQNANFLD-------HYLDVPVDLSKVLFICTANVTETIPEPLRDRMEM-INVSG 661

Query: 183 YEIEDLKTIVQR 194
           Y  ++   I +R
Sbjct: 662 YVAQEKLAIAER 673


>gi|15221697|ref|NP_176504.1| replication factor C 40 kDa, putative [Arabidopsis thaliana]
 gi|12323266|gb|AAG51618.1|AC010795_22 replication factor, putative; 74998-73295 [Arabidopsis thaliana]
 gi|182623790|gb|ACB88833.1| At1g63160 [Arabidopsis thaliana]
 gi|332195942|gb|AEE34063.1| replication factor C 2 [Arabidopsis thaliana]
          Length = 333

 Score = 59.7 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 75/228 (32%), Gaps = 38/228 (16%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            +  +   RP  + +  G  +A S L+V      AR   + +++  GPPG GKTT    +
Sbjct: 14  NEPWVEKYRPSKVVDIVGNEDAVSRLQVI-----ARDGNMPNLILSGPPGTGKTTSILAL 68

Query: 75  ARE-----LGVNFRSTSGPVIAKAGDLAALLTNLEDR---------DVLFIDEIHRLSII 120
           A E             +         +   +     +          V+ +DE   ++  
Sbjct: 69  AHELLGTNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTSG 128

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            ++ L   +E +                 N +RF L   T+    +  P+Q R  +    
Sbjct: 129 AQQALRRTIEIYS----------------NSTRFALACNTS--AKIIEPIQSRCALVRFS 170

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
              + + L  ++   A    +    E    I   + G  R A   L+ 
Sbjct: 171 RLSDQQILGRLLVVVAAE-KVPYVPEGLEAIIFTADGDMRQALNNLQA 217


>gi|222615775|gb|EEE51907.1| hypothetical protein OsJ_33507 [Oryza sativa Japonica Group]
          Length = 905

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 50/232 (21%), Positives = 79/232 (34%), Gaps = 21/232 (9%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           VS + +     RPR+  E  GQ     +L   I     R       LF GP G GKT+ A
Sbjct: 84  VSDQRSLSQKYRPRSFNELVGQSFVVQSLNNAI----IRERIAPAYLFHGPRGTGKTSAA 139

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY----- 126
           ++ +  L       + P      +     T      ++ +D  +R SI     L      
Sbjct: 140 RIFSAALSCVAIGENKP-CGACMECTDFFTGNGIN-LIEVDASNRKSINRIRHLIENIPA 197

Query: 127 PAMEDFQLDLMVGEGPSARS---------VKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
            A        +V E     S         +   L R   I  T     L   +  R    
Sbjct: 198 SATSSRYKVFVVDECHMVSSKVWSAFMKFLDEPLPRVVFIFITIDPENLPRAVISRCQKY 257

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           +     +I+ +   +++ A    L V   A   IA+ S G+ R A  +L ++
Sbjct: 258 MFSKIKDIDIVCR-LRKIAVKENLDVELAALDLIALNSDGSLRDAETMLDQL 308


>gi|187776739|ref|ZP_02993212.1| hypothetical protein CLOSPO_00254 [Clostridium sporogenes ATCC
           15579]
 gi|187775398|gb|EDU39200.1| hypothetical protein CLOSPO_00254 [Clostridium sporogenes ATCC
           15579]
          Length = 654

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 64/262 (24%), Positives = 105/262 (40%), Gaps = 33/262 (12%)

Query: 26  TLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T E+  GQ EA  +L   +          +  A+     L VGPPG GKT LA+ VA E 
Sbjct: 163 TFEDVAGQDEAKESLVEIVDFLHKPERYTEIGAKLPKGALLVGPPGTGKTLLAKAVAGEA 222

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  L    +++   ++FIDEI  +    +  +    E
Sbjct: 223 KVPFFSLSGSSFVEMFVGMGAARVRDLFEQAQEKAPCIIFIDEIDAIGKSRDNAMSSNDE 282

Query: 131 -DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ-----DRFGIPIRLNFYE 184
            +  L+ ++ E     S K       ++AAT R  +L   L      DR  I  R +   
Sbjct: 283 REQTLNQLLAEMDGFDSSKG----VVILAATNRPEILDKALLRPGRFDRRVIVDRPDLKG 338

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            ED+  +  +G K++           ++  ++ TP   G  L  + + A +   K   +E
Sbjct: 339 REDILKVHSKGVKISKEVD-------MSSVAKSTPGAVGSDLANIINEAALRAVKNGRQE 391

Query: 245 IADAALLR-LAIDKMGFDQLDL 265
           +    L   + +   G ++ D 
Sbjct: 392 VIQEDLEEAVEVIIAGKEKKDR 413


>gi|83594802|ref|YP_428554.1| DNA polymerase III subunits gamma and tau [Rhodospirillum rubrum
           ATCC 11170]
 gi|83577716|gb|ABC24267.1| DNA-directed DNA polymerase [Rhodospirillum rubrum ATCC 11170]
          Length = 659

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 57/310 (18%), Positives = 103/310 (33%), Gaps = 31/310 (10%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           +   +         RP + +   GQ      L   I++ +         +  G  G+GKT
Sbjct: 32  TPASAPYRVLARKYRPASFDALIGQEALVRTLTNAIDSGRLAQAW----MLTGVRGVGKT 87

Query: 69  TLAQVVARELGVNFRSTSGPVI---AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           T A+++AR L        G V        +    +      DVL +D   R  +     +
Sbjct: 88  TTARLIARALNCVGADGKGGVTITPCGVCEHCKAIAEDRHVDVLEMDAASRTGVGDIREI 147

Query: 126 Y------PAMEDFQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
                  PA+   ++ ++               ++++        I ATT +  +   + 
Sbjct: 148 LDGVRYRPAVARTKVYIIDEVHMLSTAAFNALLKTLEEPPEHVKFIFATTEIRKVPVTVL 207

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R      L      +L     R A L G  +   A   IA  + G+ R    LL    D
Sbjct: 208 SRCQ-RFDLRRVSAAELSGHFLRIAGLEGAEIAPSALTLIARAADGSVRDGLSLL----D 262

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
            A      T++       L      ++ FD LD      IA +       ++   A  ++
Sbjct: 263 QAIAHGGGTVSEAQVAEMLGLADRARI-FDLLDALLAGRIAESLDL----LDRQYALGAD 317

Query: 292 PRDAIEDLIE 301
           P   ++DL++
Sbjct: 318 PLVIVQDLLD 327


>gi|73667555|ref|YP_303571.1| DNA-directed DNA polymerase [Ehrlichia canis str. Jake]
 gi|72394696|gb|AAZ68973.1| DNA-directed DNA polymerase [Ehrlichia canis str. Jake]
          Length = 491

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 46/250 (18%), Positives = 88/250 (35%), Gaps = 25/250 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP   ++  GQ      L       K      + +L  G  G+GKTT A++++  L   F
Sbjct: 8   RPSNFKDLIGQEVLVRVLHNAFHLDK----IPESILLTGTSGVGKTTAARIISMCLNCAF 63

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS-----IIVEEILYPAMEDFQLDLM 137
             TS P       ++  + N    DV+ ID     S     +I+E   Y  +       +
Sbjct: 64  GPTSDPCNTCQNCIS--IKNFNHPDVIEIDAASNTSIEDVKVILENSRYMPISSKFKVYI 121

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             + ++        I ATT V  +   +  R            + L
Sbjct: 122 IDEVHMLSNSAFNALLKVLEEPAHYVKFILATTEVKKIPVTIISRCQ-RFDFQKISTDKL 180

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              ++  ++   +   +E+   IA  + G+ R A  +L +    A +   K ++ +    
Sbjct: 181 IKHLKAISEKENITSDEESIKLIADNADGSIRNALSILEQ----AAIYSNKVLSEKSTKE 236

Query: 249 ALLRLAIDKM 258
            L  ++   +
Sbjct: 237 MLGYVSRHTL 246


>gi|15617964|ref|NP_224248.1| DNA polymerase III subunits gamma and tau [Chlamydophila pneumoniae
           CWL029]
 gi|16753004|ref|NP_445277.1| DNA polymerase III subunits gamma and tau [Chlamydophila pneumoniae
           AR39]
 gi|33241379|ref|NP_876320.1| DNA polymerase III subunits gamma and tau [Chlamydophila pneumoniae
           TW-183]
 gi|4376294|gb|AAD18193.1| DNA Polymerase III Gamma and Tau [Chlamydophila pneumoniae CWL029]
 gi|7189650|gb|AAF38540.1| DNA polymerase III, gamma subunit [Chlamydophila pneumoniae AR39]
 gi|33235887|gb|AAP97977.1| DNA polymerase III (gamma and tau subunits) dnaX [Chlamydophila
           pneumoniae TW-183]
          Length = 442

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 59/276 (21%), Positives = 97/276 (35%), Gaps = 32/276 (11%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLK---VFIEAAKARAEALDHVLFVGPPGLGK 67
            +    A     RP+   E  GQ    + LK   VF  AA A        LF G  G GK
Sbjct: 2   TLQPYQASSRKYRPQIFREILGQSSVVAVLKNALVFNRAAHAY-------LFSGIRGTGK 54

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHR-----LSIIVE 122
           TTLA+++A+ L     S  G    +      + +     DVL ID         +  I E
Sbjct: 55  TTLARILAKALNCVHLSEDGEPCNQCFSCKEIASG-SSLDVLEIDGASHRGIEDIRQINE 113

Query: 123 EILYPAMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
            +L+  ++      ++ E             ++++          ATT +  +   +  R
Sbjct: 114 TVLFTPVKAKFKIYIIDEVHMLTKEAFNALLKTLEEPPQHVKFFFATTEIHKIPGTILSR 173

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                     E   L+ +    A+   +  + EA   IA  ++G+ R A  L   V    
Sbjct: 174 CQKMHLQRIPEKTILEKLSLM-AQDDHIEASQEALAPIARAAQGSLRDAESLYDYVISLF 232

Query: 234 EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLT 269
                K+++ +    AL   + D +    LD   L 
Sbjct: 233 P----KSLSPDTVAQALGFASQDSLR--TLDNAILQ 262


>gi|13508357|ref|NP_110307.1| gamma-like [Mycoplasma pneumoniae M129]
 gi|2494198|sp|P75177|DPO3X_MYCPN RecName: Full=DNA polymerase III subunit gamma/tau
 gi|1673890|gb|AAB95872.1| DnaX [Mycoplasma pneumoniae M129]
          Length = 681

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 45/262 (17%), Positives = 82/262 (31%), Gaps = 54/262 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH-VLFVGPPGLGKTTLAQVVARELGV- 80
           RP    +  GQ       ++ + A     + L H  +F G  G GKTT A+++A+ +   
Sbjct: 10  RPTKFSDTVGQDSIK---RIIVNAI--TQDQLPHGYIFAGERGTGKTTFAKIIAKAINCL 64

Query: 81  ----------------------NFRSTSGPVIAKAGDLAALLTNL------EDRDVLFID 112
                                 +             D+  L  N+        + V  +D
Sbjct: 65  NWNGDVCNQCEACQAINSNSAIDVFEIDAASKNGINDIRELAENVFNLPFKFKKKVYILD 124

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E H L+      L   +E         E P              I ATT    +   +  
Sbjct: 125 EAHMLTPQSWSGLLKTLE---------EAPDY---------VLFIFATTEFNKIPITILS 166

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R            + ++  +   A    + +T +A  ++A  ++G+ R    LL ++ +F
Sbjct: 167 RCQSFFFKQI-TNDLIQQRLAEVAAKESIKITTDALVKLADLAQGSLRDGLSLLDQISNF 225

Query: 233 AEVAHAKTITREIADAALLRLA 254
           +E         E     L +  
Sbjct: 226 SESKTISLADVEKTFNLLDKEQ 247


>gi|326404392|ref|YP_004284474.1| DNA polymerase III gamma/tau subunit [Acidiphilium multivorum
           AIU301]
 gi|325051254|dbj|BAJ81592.1| DNA polymerase III gamma/tau subunit [Acidiphilium multivorum
           AIU301]
          Length = 614

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 54/328 (16%), Positives = 91/328 (27%), Gaps = 75/328 (22%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T ++  GQ      L+     A A        +  G  G+GKTT A+++AR L
Sbjct: 47  ARKYRPTTFDDLIGQDGLVRTLR----NAFAMNRIAHAFMLTGVRGVGKTTTARILARAL 102

Query: 79  GV-----------------------------NFRSTSGPVIAKAGDLAALLTNLEDRD-- 107
                                          +             D+  ++     R   
Sbjct: 103 NCTGADGQGGPTPDPCGVCDNCVAILADRHPDVVEMDAASNTGVDDVREIIEATRFRPMI 162

Query: 108 ----VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
               V  +DE+H LS      L   +E+                         + ATT +
Sbjct: 163 ARTKVFIVDEVHMLSRNAFNALLKTLEE------------------PPPHVKFVFATTEI 204

Query: 164 GLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAG 223
             +   +  R      L    ++ L     R A+   +AV   A   +A  + G+ R   
Sbjct: 205 RKVPITVLSRCQ-RFDLKRVPVDVLAAHFARIAEKEAVAVEGGALDAVARAADGSVRDGL 263

Query: 224 RLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIE 283
            LL +               +        L  D +G    D   +  +      G     
Sbjct: 264 SLLDQA----------IARADEGAPVTAELVADMLGL--ADRGMVFDLLEAVAAGDP--- 308

Query: 284 TISAGLSEPRDAIEDLIEPYMIQQGFIQ 311
             +  L     A E   +P ++ Q  + 
Sbjct: 309 --AGALGVMDRAHEAGADPVLVMQDLLG 334


>gi|295698486|ref|YP_003603141.1| ATP-dependent metallopeptidase HflB [Candidatus Riesia pediculicola
           USDA]
 gi|291157308|gb|ADD79753.1| ATP-dependent metallopeptidase HflB [Candidatus Riesia pediculicola
           USDA]
          Length = 605

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 51/250 (20%), Positives = 92/250 (36%), Gaps = 23/250 (9%)

Query: 25  RTLEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
            T ++  G  EA   +K  +E         K   +    +L +GPPG GKT LA+ +A E
Sbjct: 150 TTFDDVAGCDEAKEEVKELVEYLREPDRFKKLGGKIPKGILMIGPPGTGKTLLAKAIAGE 209

Query: 78  LGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
             V F + SG       V   A  +  +    +     ++FIDEI  +       L    
Sbjct: 210 ARVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKTSPCIIFIDEIDAVGRQRGTGLGGGH 269

Query: 130 EDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           ++ +  L  M+ E       +       +IAAT R  +L   L    RF   + +   ++
Sbjct: 270 DEREQTLNQMLVEMDGFEGNEG----IIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDV 325

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
              + I++   K   +    +A+         +      L+     FA   +   +  E 
Sbjct: 326 RGREQILKIHMKKIPIDSKVDASILARGTPGFSGADLSNLVNEAAIFAARTNQSVVRMED 385

Query: 246 ADAALLRLAI 255
            + A  ++ +
Sbjct: 386 FEKAKDKIMM 395


>gi|116513142|ref|YP_812049.1| DNA polymerase III subunits gamma and tau [Lactococcus lactis
           subsp. cremoris SK11]
 gi|116108796|gb|ABJ73936.1| DNA polymerase III, tau subunit [Lactococcus lactis subsp. cremoris
           SK11]
          Length = 553

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 44/251 (17%), Positives = 75/251 (29%), Gaps = 55/251 (21%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     R +  +E  GQ    + LK  I         + H  LF GP G GKT+ A++ A
Sbjct: 5   ALYRKYRSQRFDEMVGQEVVATTLKNAI-----VNHQISHAYLFSGPRGTGKTSAAKIFA 59

Query: 76  RELGVNFRST------------------------SGPVIAKAGDLAALLTN----LEDRD 107
           + +    +                                   ++  +            
Sbjct: 60  KAINCPNQVDGEPCNNCFICDSITKGSLDDVIELDAASNNGVDEIREIRDKSTYAASQAT 119

Query: 108 --VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
             V  IDE+H LS      L   +E+                         + ATT +  
Sbjct: 120 YKVYIIDEVHMLSTGAFNALLKTLEEPT------------------ENVVFVLATTELQK 161

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           +   +  R       +    + ++T + +     G+   D+A   IA  + G  R A  L
Sbjct: 162 IPATIISRVQRFAFKSITTAD-IRTYLGKILGDEGVEFEDKALDVIAKAAEGGMRDALSL 220

Query: 226 LRRVRDFAEVA 236
           L +   F+   
Sbjct: 221 LDQALSFSAGK 231


>gi|323455706|gb|EGB11574.1| hypothetical protein AURANDRAFT_550 [Aureococcus anophagefferens]
          Length = 725

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 62/247 (25%), Positives = 95/247 (38%), Gaps = 27/247 (10%)

Query: 11  NVSQEDADISLLR------PR-TLEEFTGQVEACSNLKVFIE-----AAKARAEALD--- 55
             +++  + S LR      P+ +  +  G  +    LK  +E     AAK R   L    
Sbjct: 434 QKAKDRVNPSALRETAASVPKASWADVGGLEDVKRELKETVEYPVQHAAKFRQFGLPPSK 493

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------ 107
            VLF GPPG GKT LAQ VA E G NF S  GP +     G+  A + NL ++       
Sbjct: 494 GVLFYGPPGCGKTLLAQAVAHECGANFISIKGPELLTMWFGESEANVRNLFEKARASAPC 553

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           +LF DEI  ++         A E    D ++ +  +            +I AT R  +L 
Sbjct: 554 ILFFDEIDAIAKARGSGQGGASEAG--DRVINQILTEIDGVGARKDVFVIGATNRPEVLD 611

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             +     +   +     ++        A L    V    A ++ + +R TP  +G    
Sbjct: 612 AAITRPGRLDTLVYIPLPDEASRRAVFAAALRNSPVD--GAVDLDLLARATPGFSGADCT 669

Query: 228 RVRDFAE 234
            V   A 
Sbjct: 670 EVCKRAA 676



 Score = 43.5 bits (101), Expect = 0.051,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 23/134 (17%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAE--------ALDH 56
           E L+  +  ++D         + ++  G  +A + ++  +E    R E            
Sbjct: 163 EPLMRSDDDRDDEV-------SYDDLGGIAKALATVRELVETPLKRPEFYEKVGVAPPRG 215

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLAALLTNLEDR------DV 108
           VL  G PG GKT++A+ VA E G  F   +G  I   +AG+  A L    D        +
Sbjct: 216 VLLHGAPGCGKTSIARAVAAETGAYFFLINGAEILSKQAGEAEANLRKAFDEARKHAPSL 275

Query: 109 LFIDEIHRLSIIVE 122
           +F+DE+  ++   +
Sbjct: 276 IFLDEVDAIAPRSD 289


>gi|315655900|ref|ZP_07908798.1| cell division protein FtsH [Mobiluncus curtisii ATCC 51333]
 gi|315489964|gb|EFU79591.1| cell division protein FtsH [Mobiluncus curtisii ATCC 51333]
          Length = 759

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 61/249 (24%), Positives = 91/249 (36%), Gaps = 29/249 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  EA   L+   E         K  A+    VL  GPPG GKT LA+ VA E 
Sbjct: 185 TFADVAGVNEAVEELQEIKEFLAEPEKFHKLGAKIPKGVLLYGPPGTGKTLLARAVAGEA 244

Query: 79  GVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           GV F S SG            ++  DL           ++F+DEI  +       L    
Sbjct: 245 GVPFFSMSGSEFVEMFVGMGASRVRDLFEQARAAAP-AIIFVDEIDAVGRHRGTGLGGGH 303

Query: 130 EDFQLD----LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183
           ++ +      L+  +G   R+  I      +IAAT R  +L   L    RF   + +   
Sbjct: 304 DEREQTLNQLLVEMDGFDERTNVI------MIAATNRADVLDPALLRPGRFDRQVAVEAP 357

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           +++  + I+   AK   L    +           T      +L      A     +TIT 
Sbjct: 358 DLKGREAILAVHAKNKPLDPETDIKSLAKRSPGFTGADLANVLNEAALLAARHSRETITA 417

Query: 244 EIADAALLR 252
           +  D A+ R
Sbjct: 418 QDLDEAVDR 426


>gi|328793565|ref|XP_392703.4| PREDICTED: ATP-dependent zinc metalloprotease YME1 homolog isoform
           1 [Apis mellifera]
          Length = 734

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 53/253 (20%), Positives = 88/253 (34%), Gaps = 26/253 (10%)

Query: 21  LLRPRT----LEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTT 69
             RP T      +  G  EA   L   +E  K         A+    VL VGPPG GKT 
Sbjct: 270 KFRPETTDITFNDVKGVAEAKQELSDIVEFLKNPEKFSALGAKLPKGVLLVGPPGTGKTL 329

Query: 70  LAQVVARELGVNFRSTSGPVIA------KAGDLAALLTNLEDR--DVLFIDEIHRLSIIV 121
           LA+ VA E GV F   +GP          A  +  L    +++   V+FIDEI  +    
Sbjct: 330 LARAVAGEAGVPFFHAAGPEFEEILVGQGARRMRDLFKAAKEKAPAVIFIDEIDSVGAKR 389

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIR 179
                    +  ++ ++ E       +       ++ AT R   L   L    RF + + 
Sbjct: 390 TNSALHPYANQTVNQLLTEMDGFLQNEG----VIVLGATNRRDDLDKALMRPGRFDVEVV 445

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           ++  +    K I             D +             I   ++ +    A +  A+
Sbjct: 446 VDIPDYSSRKEIFDLYLSKILTRDVDTSYLAKCTVGFTGADIEN-MVNQAALRAAINDAE 504

Query: 240 TITREIADAALLR 252
            ++ +  + A  +
Sbjct: 505 YVSMKHLEYARDK 517


>gi|322389826|ref|ZP_08063368.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus
           parasanguinis ATCC 903]
 gi|321143486|gb|EFX38922.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus
           parasanguinis ATCC 903]
          Length = 558

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 60/348 (17%), Positives = 111/348 (31%), Gaps = 48/348 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     R +T  +  GQ      L+  +E      + + H  LF GP G GKT++A++ A
Sbjct: 4   ALYRKYRSQTFGQLVGQQVVARTLRQAVE-----QDKISHAYLFSGPRGTGKTSVAKIFA 58

Query: 76  RELGVNFRST------------------------SGPVIAKAGDLAALLTN------LED 105
           + +    +                                   ++  +         L  
Sbjct: 59  KAMNCPNQVNGEPCNNCYICESITNGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLAK 118

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQ--LDLMVGEGPSARSVKINLSRFTLIAATTRV 163
             V  IDE+H LS      L   +E+    +  ++      +     LSR       +  
Sbjct: 119 HKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIK 178

Query: 164 GLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLA-VTDEAACEIAMRSRGTPRIA 222
                   +       +  YE + ++ I +R       A    + A  +   S  T  IA
Sbjct: 179 LPDIVQHLENILATEGIA-YEADAVQIIARRAEGGMRDALSILDQALSLTAGSELTAAIA 237

Query: 223 GRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDL------RYLT--MIARN 274
             +   +   A   +   I    A AAL +LAI       +        +YL   +I + 
Sbjct: 238 EEITGSISLAALDQYVAAILDHDATAALDQLAIIFDNGKNMARFVADLLQYLRDLLIVQT 297

Query: 275 FGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPI 322
            G      +  +A L+  +  +  LI+        I+ + + R+   +
Sbjct: 298 GGENTHASDLFAANLAADQARLFALIDQATTSLADIKNSLQPRIYTEM 345


>gi|262401171|gb|ACY66488.1| replication factor C 2 (40kD) isoform 2 [Scylla paramamosain]
          Length = 332

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 81/233 (34%), Gaps = 38/233 (16%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           S + +     I   RP T  +  G  E  + L+VF     A+   + +++  GP G+GKT
Sbjct: 23  SPSETSHAPWIEKYRPTTFPDIVGNEETVARLEVF-----AKQGNVPNIIIAGPLGVGKT 77

Query: 69  TLAQVVAR------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEI 114
           T    +AR            EL  +       V  K    A     L      ++ +DE 
Sbjct: 78  TTILCLARALLGPSFREAVMELNASNDRGIDVVRNKIKMFAQQKVTLPKGKHKIIILDEA 137

Query: 115 HRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRF 174
             ++   ++ L   ME +                 N +RF    A      +  P+Q R 
Sbjct: 138 DSMTDGAQQALRRTMEIYS----------------NTTRF--ALACNSSEKIIEPIQSRC 179

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
            +       + + L   +Q       L+ TD+    I   ++G  R A   L+
Sbjct: 180 AMLRYSKLTDAQILNK-LQHVCSKEDLSYTDDGLEAILFTAQGDMRQALNNLQ 231


>gi|194757830|ref|XP_001961165.1| GF11135 [Drosophila ananassae]
 gi|190622463|gb|EDV37987.1| GF11135 [Drosophila ananassae]
          Length = 801

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 84/257 (32%), Gaps = 28/257 (10%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVAR 76
            T  +  G       L+  ++      +            VLF GPPG GKT LA+ +A 
Sbjct: 471 TTWSDIGGLESVKKELQELVQYPVEHPDKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIAN 530

Query: 77  ELGVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127
           E   NF S  GP +         A   D+     +     VLF DE+  ++      +  
Sbjct: 531 ECQANFISVKGPELLTMWFGESEANVRDIFDKARSAAP-CVLFFDELDSIAKARGGNMGD 589

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           A      D ++ +  +            +I AT R  ++   +    R    I +   + 
Sbjct: 590 A--GGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDD 647

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA------EVAHAK 239
           +  + I++   + + LA   +      +    +      + +R    A           +
Sbjct: 648 KSREAILKANLRKSPLAKEVDLTYIAKVTQGFSGADLTEICQRACKLAIRQAIEAEIRRE 707

Query: 240 TITREIADAALLRLAID 256
               E  ++A+     D
Sbjct: 708 KERSENQNSAMDMDEDD 724



 Score = 51.6 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 48/254 (18%), Positives = 84/254 (33%), Gaps = 31/254 (12%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARA--------EALDHVLFVGPPGLGKTTLAQVVARELG 79
           ++  G  +  + +K  +E              +    +L  GPPG GKT +A+ VA E G
Sbjct: 201 DDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVANETG 260

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMED 131
             F   +GP I          +L       E     ++FIDEI  ++   ++        
Sbjct: 261 AFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAIIFIDEIDAIAPKRDKTHGEVERR 320

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ-----DRFGIPIRLNFYEIE 186
               L+       +S     S   ++AAT R   +   L+     DR       +     
Sbjct: 321 IVSQLLTLMDGMKKS-----SHLIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRL 375

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGT-----PRIAGRLLRRVRDFAEVAHAKTI 241
           ++  I  +  KL      ++ A E                A + +R   D  ++   K  
Sbjct: 376 EVLRIHTKNMKLHEDVDLEQIAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDKID 435

Query: 242 TREIADAALLRLAI 255
              +A  A+     
Sbjct: 436 AEVLASLAVTMENF 449


>gi|50365487|ref|YP_053912.1| cell division protein [Mesoplasma florum L1]
 gi|81391677|sp|Q6F0E5|FTSH_MESFL RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|50364043|gb|AAT76028.1| cell division protein [Mesoplasma florum L1]
          Length = 650

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 60/232 (25%), Positives = 97/232 (41%), Gaps = 22/232 (9%)

Query: 35  EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA--- 91
           E    LK   + A+A A A   VL  GPPG GKT LA+ VA E GV+F S +G       
Sbjct: 191 ELVDYLKFPAKYAEAGARAPKGVLMEGPPGTGKTLLAKAVAGEAGVSFFSIAGSEFEEMF 250

Query: 92  ---KAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARS 146
               A  +  +  + +     ++FIDEI  +       +     +  L+ ++ E     +
Sbjct: 251 VGVGASRVREMFNDAKKSAPAIIFIDEIDAVGRKRNNGMGSGGNEQTLNQLLVEMDGFGT 310

Query: 147 VKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVT 204
                S   ++AAT R  +L   L    RF   I+++  +I++ K I++  AK   +   
Sbjct: 311 N----SGIIVMAATNRADVLDPALLRPGRFDRVIQVSLPDIKERKAILELHAKGKKID-- 364

Query: 205 DEAACEIAMRSRGTPRIAGRLLRRVRDFAEV----AHAKTITREIADAALLR 252
              + +    +  TP  +G  L  V + A +         IT    D A+ R
Sbjct: 365 --GSVDWYRVAERTPGFSGAQLENVLNEAAILMVREKRDIITITEIDEAIDR 414


>gi|224418720|ref|ZP_03656726.1| zinc metallopeptidase [Helicobacter canadensis MIT 98-5491]
 gi|253826750|ref|ZP_04869635.1| Cell division protein FtsH [Helicobacter canadensis MIT 98-5491]
 gi|313142239|ref|ZP_07804432.1| zinc metallopeptidase [Helicobacter canadensis MIT 98-5491]
 gi|253510156|gb|EES88815.1| Cell division protein FtsH [Helicobacter canadensis MIT 98-5491]
 gi|313131270|gb|EFR48887.1| zinc metallopeptidase [Helicobacter canadensis MIT 98-5491]
          Length = 643

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 61/251 (24%), Positives = 90/251 (35%), Gaps = 18/251 (7%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           +E     E    LK     A   A+    VL VGPPG GKT LA+ VA E  V F S SG
Sbjct: 191 DEVV---EIVDFLKNPERYAALGAKIPKGVLLVGPPGTGKTLLAKAVAGEANVPFFSVSG 247

Query: 88  P------VIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
                  V   A  +  L  N +     ++FIDEI  +       +     D +   +  
Sbjct: 248 SSFIEMFVGVGASRVRDLFENAKKEAPSIIFIDEIDAIGKSRANGMVGGGNDEREQTLNQ 307

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAK 197
                     + S   ++AAT R  +L   L    RF   + ++  + E    I++   K
Sbjct: 308 LLAEMDGFNSDSSPVIVLAATNRPEVLDPALLRPGRFDRQVLVDKPDFEGRVEILKVHIK 367

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAG-RLLRRVRDFAEVAHAKTITREIADAALLRLAID 256
              LA   +        S+ T  +AG  L   V + A +A             L  +   
Sbjct: 368 NIKLARNVDLFE----VSKLTAGLAGADLANIVNEAALLAGRNDKKGVEQSDFLEAVERS 423

Query: 257 KMGFDQLDLRY 267
             G ++   R 
Sbjct: 424 IAGLEKKSRRI 434


>gi|156088043|ref|XP_001611428.1| hypothetical protein [Babesia bovis T2Bo]
 gi|154798682|gb|EDO07860.1| conserved hypothetical protein [Babesia bovis]
          Length = 336

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 75/224 (33%), Gaps = 26/224 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP +L++      A + ++  +E+       + H++F GPPG GKT+ A  +AR
Sbjct: 6   PWVEKYRPASLDDIVFHTNAMTTMRHIVES-----YDMPHMIFHGPPGTGKTSAALAIAR 60

Query: 77  E------LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
           +      +       +         +   +      ++                + P  +
Sbjct: 61  QIYGPEGMKERVLELNASDERGINVVRERIKTYTRLNIS-----SNRVNTQTGRVMPNFK 115

Query: 131 DFQLDL--MVGEGPSARSVKI-----NLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
              LD   M+     A   +I     N+SRF LI     V  +  P+  R          
Sbjct: 116 MIILDEADMITPDAQAALRRIIENFSNISRFILIC--NYVHKIIGPIYSRCS-AFHFKPI 172

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             +     ++       L   D A   +   S+G  R +  +L+
Sbjct: 173 SQDAQIERLRYICTAESLEYEDHALDFLTQVSQGDMRRSVTILQ 216


>gi|260101304|ref|ZP_05751541.1| AAA family ATPase [Lactobacillus helveticus DSM 20075]
 gi|260084889|gb|EEW69009.1| AAA family ATPase [Lactobacillus helveticus DSM 20075]
          Length = 89

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 5/81 (6%)

Query: 51  AEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPV-----IAKAGDLAALLTNLED 105
            + +  ++  GPPG GKTTLA+++A+    +F + S        I K  + A       +
Sbjct: 7   KDRVPSLILWGPPGTGKTTLAEIIAKRTKAHFITFSAVTSSIKDIRKIMEEAEQNRQFGE 66

Query: 106 RDVLFIDEIHRLSIIVEEILY 126
           + ++FIDEI  L    +   Y
Sbjct: 67  KTIVFIDEITVLIKHNKMPFY 87


>gi|167382107|ref|XP_001735975.1| hypothetical protein [Entamoeba dispar SAW760]
 gi|165901776|gb|EDR27788.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
          Length = 622

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 49/247 (19%), Positives = 86/247 (34%), Gaps = 24/247 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAA--------KARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           T +   G  E  + LK  +  A        K   +    +L  GPPG GKT  A+ +A E
Sbjct: 344 TWDNIGGMEEVHNELKRLVVGAVQYPSLYKKFGVDTPAGILLYGPPGCGKTYCAKALANE 403

Query: 78  LGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAM 129
              NF +  GP +     G+    +  L  R       V+F DE+  L+    E      
Sbjct: 404 CKANFIAVKGPQLLNKYVGEAERAVRQLFMRARNSAPCVIFFDELDALAPKRSE------ 457

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
           +   +  +V +  +            ++AAT R   +   +    R    I ++    + 
Sbjct: 458 DSSGVSRIVNQLLTELDGMDVRKDVFVVAATNRPDCIDPAMLRPGRLDRLISVDLPNSDA 517

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
              I++   K   + + D    E   RS      +G  L  +   A V     I +++  
Sbjct: 518 RVDILKTICKRQKVPLADSVNLEKIARSVQVDGFSGADLTALVKEASVRALDEIVKKVGY 577

Query: 248 AALLRLA 254
            +  +  
Sbjct: 578 ESAQKDG 584



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 50/251 (19%), Positives = 84/251 (33%), Gaps = 25/251 (9%)

Query: 34  VEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARELGVNFRST 85
            +  + ++  +E      E   H        +L  GPPG GKT LA+ +A E+GV F   
Sbjct: 47  DKIITEVRELVEYPLLHPEIYKHLGIEPPRGILLHGPPGCGKTLLAKAIAGEVGVAFIEV 106

Query: 86  SGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           S   +           +  L  +   R   +LFIDEI  ++   +             L+
Sbjct: 107 SATELVGGMSGESESKIRDLFQSASQRAPALLFIDEIDAITPKRDNAQREMERRIVAQLL 166

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRG 195
                 + + K       +I AT R   L   L+   RF   I +        K I+   
Sbjct: 167 SSLDKLSEADK----PVIVIGATNRPDSLDPALRRAGRFDREIAMGIPSEAQRKQILD-- 220

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255
            K+      D A     +       +   +    ++ A  A  +  + +     L  +  
Sbjct: 221 -KMMVNLKIDSAVNIEKLAKGTAGYVGADIAALTKEAAIAAIHRIFSGKAGTDNLKSIQQ 279

Query: 256 DKMGFDQLDLR 266
           D    +Q DL 
Sbjct: 280 DVEEENQKDLN 290


>gi|118443590|ref|YP_877423.1| cell division protein ftsH [Clostridium novyi NT]
 gi|118134046|gb|ABK61090.1| cell division protein ftsH [Clostridium novyi NT]
          Length = 611

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 67/285 (23%), Positives = 112/285 (39%), Gaps = 26/285 (9%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +T  +  GQ EA  +L   ++            A+     L VGPPG GKT LA+ VA E
Sbjct: 160 KTFNDVAGQDEAKESLIEIVDFLHNPDKYVAIGAKLPKGALLVGPPGTGKTLLAKAVAGE 219

Query: 78  LGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
             V F S SG       V   A  +  L    + +   ++FIDEI  +    +  +    
Sbjct: 220 AKVPFFSLSGSSFVEMFVGMGASRVRDLFEQAKQKAPCIIFIDEIDAIGKSRDGNVGGGN 279

Query: 130 EDFQLDLMVGEGPSARSVKINLSR-FTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           ++ +  L       A     + S+   ++AAT R  +L   L    RF   + ++  +++
Sbjct: 280 DEREQTL---NQLLAEMDGFDGSKGVVILAATNRPEVLDKALLRPGRFDRRVIVDIPDLK 336

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++  AK   ++  D    EIA   + TP   G  L  + + A +   K   + + 
Sbjct: 337 GREAILKVHAKDVKMS-EDVNLDEIA---KSTPGAVGADLANMVNEAALLAVKKDRKSVI 392

Query: 247 DAALLR-LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
              L   + I   G ++ D        R      VG   ++A L 
Sbjct: 393 QEDLEEAIDIIIAGKEKKDRIMSDSEKRRVAFHEVGHALVAALLK 437


>gi|50552452|ref|XP_503636.1| YALI0E06655p [Yarrowia lipolytica]
 gi|49649505|emb|CAG79218.1| YALI0E06655p [Yarrowia lipolytica]
          Length = 774

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 56/263 (21%), Positives = 96/263 (36%), Gaps = 31/263 (11%)

Query: 16  DADISLLR------P-RTLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFV 60
           D   S +R      P  T  +  GQ      LK  +E    +A+ + +        VL  
Sbjct: 492 DVRPSAMREIFLEKPSTTWSDIGGQSGVKEKLKQMVEWPLTKADTMKNLGITPPRGVLLY 551

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DVLFID 112
           GPPG  KT +A+ +A E G+NF S  GP +     G+    +  +  +       ++F D
Sbjct: 552 GPPGCSKTLIAKALANESGLNFLSVKGPELFNKYVGESERAVREIFRKARAAAPSIIFFD 611

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           EI  LS         A  +  L  ++ E         +L+   ++AAT R  ++ + L  
Sbjct: 612 EIDALSTARGHSEAGAGGERVLTSLLTE----MDGIESLNGVMVLAATNRPDVIDSALMR 667

Query: 173 --RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
             R    + +   +    + I++   K   L    +           T      L     
Sbjct: 668 PGRLSRLLYVGPPDEHARQQILKIRTKNMCLGSEVDLEEIAKTTEGMTGAEIVALCEEAG 727

Query: 231 DFA--EVAHAKTITREIADAALL 251
            +A  +   AK +T++  D  L 
Sbjct: 728 LYAMSQDEDAKEVTKKDFDHVLK 750



 Score = 49.7 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 46/250 (18%), Positives = 82/250 (32%), Gaps = 26/250 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--V 108
           VL  GPPG GKT L + VA+E   +  + +GP I           L A+          +
Sbjct: 275 VLLHGPPGTGKTMLLRAVAQESNAHVLTINGPSIVSKYLGETESSLRAIFEEARKYQPAI 334

Query: 109 LFIDEIHRLSIIVE-EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           +FIDEI  L    + +    A       L+      ++S      +  ++ +T R   + 
Sbjct: 335 VFIDEIDALVPRRDGDESGQAESRVVATLLTLMDGMSQSASA---KIVVVGSTNRPNAID 391

Query: 168 NPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMR-SRGTPRIAGR 224
             L+   RF   + +     E   +I+     +    +    + E     S  T    G 
Sbjct: 392 PALRRAGRFDREVEIGIPNAEARLSILS----IQMADMPHNMSEEDIQYISSITHGYVGA 447

Query: 225 LLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYL----TMIARNFGGGPV 280
            L  +     +        E   A     +  ++    L+   L    + +   F   P 
Sbjct: 448 DLSALCREGVMNAINRGLEEHGSALNAVNSGLEVTMPDLERALLDVRPSAMREIFLEKP- 506

Query: 281 GIETISAGLS 290
              T  + + 
Sbjct: 507 --STTWSDIG 514


>gi|13541778|ref|NP_111466.1| ATPase of the AAA+ class involved in cell division [Thermoplasma
           volcanium GSS1]
 gi|14325192|dbj|BAB60117.1| cell cycle control protein 48 [Thermoplasma volcanium GSS1]
          Length = 745

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 47/197 (23%), Positives = 76/197 (38%), Gaps = 23/197 (11%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARELG 79
           E+  G  E    ++  IE      E            V+  GPPG GKT +A+ VA E G
Sbjct: 190 EDIGGLSEQLGKIREMIELPLKHPELFERLGITPPKGVILYGPPGTGKTLIARAVANESG 249

Query: 80  VNFRSTSGPVIAKA------GDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAMED 131
            NF S +GP I           L  + +  E+    ++FIDEI  ++   EE     ++ 
Sbjct: 250 ANFLSINGPEIMSKYYGQSEQKLREIFSKAEETAPSIIFIDEIDSIAPKREE-----VQG 304

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
                +V +  +            +I AT R+  +   L+   RF   I +   +    K
Sbjct: 305 EVERRVVAQLLTLMDGMKERGHVIVIGATNRIDAVDPALRRPGRFDREIEIGVPDRNGRK 364

Query: 190 TIVQRGAKLTGLAVTDE 206
            I+    +   L + +E
Sbjct: 365 EILMIHTRNMPLGMDEE 381



 Score = 47.8 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 81/231 (35%), Gaps = 15/231 (6%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLED--RDV 108
            L  GPPG+GKT LA+ VA E   NF S  GP +           +  +    +     +
Sbjct: 504 FLLYGPPGVGKTLLAKAVATESNANFISIKGPEVLSKWVGESEKAIREIFKKAKQVAPAI 563

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +F+DEI  ++          + +  ++ ++        +         I AT R  ++  
Sbjct: 564 VFLDEIDSIAPRRGTTSDSGVTERIVNQLLTSLDGIEVMNG----VVAIGATNRPDIMDP 619

Query: 169 PLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
            L    RF   I +   + +   +I++   K   LA  D     IA R+ G        L
Sbjct: 620 ALLRAGRFDKLIYIPPPDKDARLSILKVHTKNMPLA-PDVDLDSIAQRTEGYVGADLENL 678

Query: 227 RRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGG 277
            R             T+      +  L   +   D+  +++   I+   G 
Sbjct: 679 CREAGMNAYRENPDATQVSQKNFIDALKTIRPSIDEEVIKFYKSISETMGK 729


>gi|301633509|gb|ADK87063.1| DNA polymerase III, subunit gamma and tau [Mycoplasma pneumoniae
           FH]
          Length = 681

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 90/247 (36%), Gaps = 24/247 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH-VLFVGPPGLGKTTLAQVVARELGVN 81
           RP    +  GQ       ++ + A     + L H  +F G  G GKTT A+++A+   +N
Sbjct: 10  RPTKFSDTVGQDSIK---RIIVNAI--TQDQLPHGYIFAGERGTGKTTFAKIIAKA--IN 62

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEIL-YPAMEDFQLD 135
             + +G V  +     A+ +N    DV  ID      I+ +  + E +   P     ++ 
Sbjct: 63  CLNWNGDVCNQCEACQAINSNSAI-DVFEIDAASKNGINDIRELAENVFNLPFKFKKKVY 121

Query: 136 LMVGEGPSARSVKINLSR--------FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ++             L +           I ATT    +   +  R            + 
Sbjct: 122 ILDEAHMLTPQSWSGLLKTLEEAPDYVLFIFATTEFNKIPITILSRCQSFFFKQI-TNDL 180

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           ++  +   A    + +T +A  ++A  ++G+ R    LL ++ +F+E         E   
Sbjct: 181 IQQRLAEVAAKESIKITTDALVKLADLAQGSLRDGLSLLDQISNFSESKTISLADVEKTF 240

Query: 248 AALLRLA 254
             L +  
Sbjct: 241 NLLDKEQ 247


>gi|300853305|ref|YP_003778289.1| DNA polymerase III subunit gamma/tau [Clostridium ljungdahlii DSM
           13528]
 gi|300433420|gb|ADK13187.1| DNA polymerase III subunit gamma/tau [Clostridium ljungdahlii DSM
           13528]
          Length = 553

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 73/240 (30%), Gaps = 21/240 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ      LK  I             LF G  G GKT+ A+++A+ +    
Sbjct: 11  RPKTFSDVVGQDHITVTLKNQI----LNHRIAHAYLFSGTRGTGKTSTAKILAKAVNCLN 66

Query: 83  RSTSGP---------VIAKAG-DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
                P         + A    D+  +    + R     D I  +    +E  Y      
Sbjct: 67  LQDGEPCNECEMCKKINAGISIDVIEMDAASKRRLEDIKDVIENVKYPPQEGKYKVYIMD 126

Query: 133 QLDLMVGEGPSARSVKINLSR--FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           ++ ++  E  +A    +         I ATT    L   +  R            E    
Sbjct: 127 EVHMLTQEAVNAFLKTLEEPPLNVIFILATTDPQKLPVTILSRCQKFDFRRIKSSEIFNR 186

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
            ++      G+   D +   IA    G  R A  +L    D A       +  +     L
Sbjct: 187 -LRCIVSEQGIFADDRSLNLIARICDGAMRDALSIL----DQAISMGNGKVEYDDVVNML 241


>gi|300122194|emb|CBK22768.2| unnamed protein product [Blastocystis hominis]
          Length = 352

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 64/277 (23%), Positives = 99/277 (35%), Gaps = 44/277 (15%)

Query: 10  RNVSQEDADISLLRPRTLEEFT------------GQVEACSNLKVFIE--------AAKA 49
           R+ S   A +  +RP  L E +            G     + L+  +E         A+ 
Sbjct: 61  RDFSSVLAVLPRIRPSALREVSISSPNVHWRQIGGLEPVKARLRELLEWPLRFTAQFARF 120

Query: 50  RAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD 107
                  VL  GPPG  KT LA+ VA E  +NF S  GP +     G+    +  +  + 
Sbjct: 121 HVSPPKGVLLYGPPGCSKTLLAKAVATEANMNFISVKGPELYSKYVGESEQAVAAVFRKA 180

Query: 108 ------VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATT 161
                 V+F DEI   ++               + +V +  +       L R  +IAAT 
Sbjct: 181 RLSSPCVIFFDEIDAFAVDSRG------SSGVTERVVSQFLTELDGIHALKRVLVIAATN 234

Query: 162 RVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTP 219
           R  LL   L    R    I L   ++E  + I++   +       D  A EIA R+ G  
Sbjct: 235 RPDLLDPALLRPGRLDTHIFLGLPDVEARRKILEVHLEKVPCD-DDVDAQEIAERTEG-- 291

Query: 220 RIAGRLLRRVRD-----FAEVAHAKTITREIADAALL 251
                L     D      +E   A+ + ++    AL 
Sbjct: 292 YSGAELAAVCSDACLTTLSENKDAEKVDQKHLRLALE 328


>gi|289613657|emb|CBI59405.1| unnamed protein product [Sordaria macrospora]
          Length = 389

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 65/189 (34%), Gaps = 31/189 (16%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
                   +   RP +L + +G  +  + +  F+++ +     L H+L  GPPG GKT+ 
Sbjct: 38  EAEDSLPWVEKYRPVSLADVSGHQDILATINKFVDSNR-----LPHLLLYGPPGTGKTST 92

Query: 71  AQVVAR-------------------ELGVNFRSTSGPVIAKAGDL-----AALLTNLEDR 106
              +AR                   + G++         A    +     +A  + L   
Sbjct: 93  ILALARRIYGTANMRQMVLELNASDDRGIDVVREQIKTFASTKQIFTLGSSASRSGLAGF 152

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDFQLD--LMVGEGPSARSVKINLSRFTLIAATTRVG 164
            ++ +DE   ++   +  L   ME +  +    +    S +     LSR T    +    
Sbjct: 153 KLIILDEADAMTSTAQMALRRIMEKYTANTRFCIIANYSHKLSPALLSRCTRFRFSPLKE 212

Query: 165 LLTNPLQDR 173
                L D+
Sbjct: 213 KDIRVLVDK 221


>gi|288561619|ref|YP_003429025.1| DNA polymerase III subunits gamma/tau [Bacillus pseudofirmus OF4]
 gi|288548251|gb|ADC52133.1| DNA polymerase III, gamma/tau subunit [Bacillus pseudofirmus OF4]
          Length = 138

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/100 (27%), Positives = 39/100 (39%), Gaps = 8/100 (8%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP  L+   GQ    + LK  I     + +     LF GP G GKT+ A+++AR
Sbjct: 5   ALYRKYRPVDLDSLVGQEHITTTLKNAI----MKNKISHGYLFTGPRGTGKTSSAKIIAR 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHR 116
            L         P     GD  +     +  D++ ID    
Sbjct: 61  ALNCTSPVKGNP----CGDCESCKLGDKHPDIIEIDAASN 96


>gi|260752672|ref|YP_003225565.1| DNA polymerase III subunits gamma/tau [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|258552035|gb|ACV74981.1| DNA polymerase III, subunits gamma and tau [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
          Length = 628

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 52/272 (19%), Positives = 91/272 (33%), Gaps = 30/272 (11%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M+D   L +             RP+   +  GQ      L   I    AR       L  
Sbjct: 1   MVDSSSLATP----YRVLARKYRPQKFSDLIGQDAMVRTLGNAI----ARDRLAHAFLLT 52

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGP-VIAKAGDLAALLTNLEDR--DVLFID----- 112
           G  G+GKT+ A+++A+ L    +   G   I   G+  A     E R  DV+ +D     
Sbjct: 53  GVRGVGKTSTARLIAKALNCVGKDGHGGMTIDPCGECEACRAIAEGRHIDVVEMDAASHT 112

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRV 163
            +  +  IVE + Y ++       ++ E             ++++   +    + ATT +
Sbjct: 113 GVDDIRDIVESVRYASVSARFKVYIIDEVHMLSKSAFNALLKTLEEPPAHVKFLFATTEI 172

Query: 164 GLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAG 223
             +   +  R      L       L     +  +L  +   +EA   IA  + G+ R   
Sbjct: 173 NKVPITVLSRCQ-RFDLRRISTATLTDYFSKVVQLEQVEAEEEALAMIAKAAEGSVRDGL 231

Query: 224 RLLRRVRDFAEVAHAKTITREIADAALLRLAI 255
            +L    D A    + +I        L     
Sbjct: 232 SIL----DQAIAHSSGSILAADVREMLGLSDR 259


>gi|218185516|gb|EEC67943.1| hypothetical protein OsI_35669 [Oryza sativa Indica Group]
          Length = 860

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 50/232 (21%), Positives = 79/232 (34%), Gaps = 21/232 (9%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           VS + +     RPR+  E  GQ     +L   I     R       LF GP G GKT+ A
Sbjct: 84  VSDQRSLSQKYRPRSFNELVGQSFVVQSLNNAI----IRERIAPAYLFHGPRGTGKTSAA 139

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY----- 126
           ++ +  L       + P      +     T      ++ +D  +R SI     L      
Sbjct: 140 RIFSAALSCVAIGENKP-CGACMECTDFFTGNGIN-LIEVDASNRKSINRIRHLIENIPA 197

Query: 127 PAMEDFQLDLMVGEGPSARS---------VKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
            A        +V E     S         +   L R   I  T     L   +  R    
Sbjct: 198 SATSSRYKVFVVDECHMVSSKVWSAFMKFLDEPLPRVVFIFITIDPENLPRAVISRCQKY 257

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           +     +I+ +   +++ A    L V   A   IA+ S G+ R A  +L ++
Sbjct: 258 MFSKIKDIDIVCR-LRKIAVKENLDVELAALDLIALNSDGSLRDAETMLDQL 308


>gi|170289856|ref|YP_001736672.1| AAA family ATPase, CDC48 subfamily protein [Candidatus Korarchaeum
           cryptofilum OPF8]
 gi|170173936|gb|ACB06989.1| AAA family ATPase, CDC48 subfamily [Candidatus Korarchaeum
           cryptofilum OPF8]
          Length = 732

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 56/223 (25%), Positives = 81/223 (36%), Gaps = 32/223 (14%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH------ 56
           D E  +S     E+  +  +   T E+  G  +A   ++  +E      E   H      
Sbjct: 158 DTEIEISEKPVTEERKVPRV---TYEDIGGLKDAIQKIREMVELPLRHPELFRHLGIDPP 214

Query: 57  --VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR-- 106
             VL  GPPG GKT LA+ VA E   +F S SGP I           L  +    E    
Sbjct: 215 KGVLLYGPPGTGKTLLAKAVANESNAHFISISGPEIMSKYYGESEKRLREIFEEAEKNAP 274

Query: 107 DVLFIDEIHRLSIIVEEILYPAMED---FQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
            ++F+DEI  ++   EE+            L LM G       + I         AT R 
Sbjct: 275 SIIFMDEIDAIAPKREEVTGEVERRVVAQLLALMDGLKGRGEVIVI--------GATNRP 326

Query: 164 GLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVT 204
             +   L+   RF   I +   + E  K I+    +   LA  
Sbjct: 327 EAIDPALRRPGRFDREIEIGVPDREGRKEILLIHTRNMPLADD 369



 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 72/188 (38%), Gaps = 26/188 (13%)

Query: 26  TLEEFTGQVEACSNLKV----------FIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
             ++  G  E    LK+            EA+ AR      +L  GPPG GKT LA+ VA
Sbjct: 452 RWDDIGGLDEVKEELKMAVEWPLKYPELFEASGARQ--PKGILLFGPPGTGKTLLAKAVA 509

Query: 76  RELGVNFRSTSGPVI--AKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYP 127
            E   NF S  GP I     G+    +  +  R       ++F DEI  ++ I       
Sbjct: 510 NESEANFISVKGPEIMSKWVGESEKAIRMIFRRARQTAPTIIFFDEIDSIAPIRGYSSDS 569

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
            + +  +  ++ E          L +  +IAAT R  L+   L    RF   I +   + 
Sbjct: 570 GVTERVISQLLTE----MDGLEELRKVVVIAATNRPDLIDPALLRPGRFDRLIYVPPPDF 625

Query: 186 EDLKTIVQ 193
                I++
Sbjct: 626 AARLQILK 633


>gi|123492688|ref|XP_001326119.1| ATPase, AAA family protein [Trichomonas vaginalis G3]
 gi|121909029|gb|EAY13896.1| ATPase, AAA family protein [Trichomonas vaginalis G3]
          Length = 489

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 52/237 (21%), Positives = 78/237 (32%), Gaps = 26/237 (10%)

Query: 33  QVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK 92
           Q      ++   + AK        VLF GPPG GKT LA+ VA E    F + +   I  
Sbjct: 227 QNLVILPMRP--DIAKGLLSPWRSVLFYGPPGTGKTFLAKAVATECKRTFFNITSATITS 284

Query: 93  A--GDLAALLT-------NLEDRDVLFIDEIHRLSIIV----EEILYPAMEDFQLDLMVG 139
              G+   L+T        ++   + F DEI  ++       E      M+   L  + G
Sbjct: 285 RFLGESEKLVTYLFNMAEEMQPSTIFF-DEIDSIASQRGSEGEHEASRRMKAQLLTRLEG 343

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199
              S        S   ++AAT     L   L  RF   + +   + E  ++I+       
Sbjct: 344 IDGSCE------SNVFVMAATNFPWDLDEALLRRFQKRVYIPLPDEEGRESILNMYLGEY 397

Query: 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAID 256
                D       +       IA       RD A++   K          L   A D
Sbjct: 398 ICHDFDTQGFVKKLDGYSCADIAN----LCRDVAQIVFDKQTQHLDTQQWLNMPAED 450


>gi|153940193|ref|YP_001392688.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum F str.
           Langeland]
 gi|152936089|gb|ABS41587.1| ATP-dependent metallopeptidase HflB [Clostridium botulinum F str.
           Langeland]
 gi|295320670|gb|ADG01048.1| ATP-dependent metallopeptidase HflB [Clostridium botulinum F str.
           230613]
          Length = 658

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 64/262 (24%), Positives = 105/262 (40%), Gaps = 33/262 (12%)

Query: 26  TLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T E+  GQ EA  +L   +          +  A+     L VGPPG GKT LA+ VA E 
Sbjct: 163 TFEDVAGQDEAKESLVEIVDFLHKPERYTEIGAKLPKGALLVGPPGTGKTLLAKAVAGEA 222

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  L    +++   ++FIDEI  +    +  +    E
Sbjct: 223 KVPFFSLSGSSFVEMFVGMGAARVRDLFEQAQEKAPCIIFIDEIDAIGKSRDNAMSSNDE 282

Query: 131 -DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ-----DRFGIPIRLNFYE 184
            +  L+ ++ E     S K       ++AAT R  +L   L      DR  I  R +   
Sbjct: 283 REQTLNQLLAEMDGFDSSKG----VVILAATNRPEILDKALLRPGRFDRRVIVDRPDLKG 338

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            ED+  +  +G K++           ++  ++ TP   G  L  + + A +   K   +E
Sbjct: 339 REDILKVHSKGVKISKEVD-------MSSVAKSTPGAVGSDLANIINEAALRAVKNGRQE 391

Query: 245 IADAALLR-LAIDKMGFDQLDL 265
           +    L   + +   G ++ D 
Sbjct: 392 VIQEDLEEAVEVIIAGKEKKDR 413


>gi|91793733|ref|YP_563384.1| DNA polymerase III, subunits gamma and tau [Shewanella
           denitrificans OS217]
 gi|91715735|gb|ABE55661.1| DNA polymerase III, subunits gamma and tau [Shewanella
           denitrificans OS217]
          Length = 921

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 74/240 (30%), Gaps = 53/240 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP   E+  GQ        + +  A ++       LF G  G+GKT+LA++ A+ L    
Sbjct: 11  RPAKFEQMVGQSHVL----LALTNALSQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCET 66

Query: 83  ------------------------RSTSGPVIAKAGDLAALLTNLEDRD------VLFID 112
                                            K  D   LL N++ +       V  ID
Sbjct: 67  GVTASPCGTCSSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYKPARGRFKVYLID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS      L   +E+                         + ATT    L   +  
Sbjct: 127 EVHMLSRSSFNALLKTLEE------------------PPEHVKFLLATTDPQKLPVTVLS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R  +   L     +++   ++       L    +A   +A  + G+ R A  L  +   F
Sbjct: 169 RC-LQFNLKSLSQDEISQQLEFILGQEQLPFESQALTLLAKAANGSMRDALSLTDQAIAF 227


>gi|242051511|ref|XP_002454901.1| hypothetical protein SORBIDRAFT_03g001130 [Sorghum bicolor]
 gi|241926876|gb|EES00021.1| hypothetical protein SORBIDRAFT_03g001130 [Sorghum bicolor]
          Length = 847

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 51/276 (18%), Positives = 96/276 (34%), Gaps = 39/276 (14%)

Query: 11  NVSQEDADISLLRPR---------TLEEFTGQVEACSNLKVFIEAAKARAEALDH----- 56
            V  ++     +RP          + ++     +   +L   +     R +         
Sbjct: 512 EVPPDNEFEKRIRPEVIPANEIGVSFDDIGALDDIKESLHELVMLPLRRPDLFKGGLLKP 571

Query: 57  ---VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLED-- 105
              +L  GPPG GKT LA+ +A E   +F + S   I          ++ AL T      
Sbjct: 572 CRGILLFGPPGTGKTMLAKAIANEAQASFINVSMSTITSKWFGEDEKNVRALFTLAAKVS 631

Query: 106 RDVLFIDEIHRL----SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATT 161
             ++F+DE+  +    +   E     AM   + + M         +     R  ++AAT 
Sbjct: 632 PTIIFVDEVDSMLGQRNRAGEHE---AMRKIKNEFMT---HWDGLLSRPDQRILVLAATN 685

Query: 162 RVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRI 221
           R   L   +  RF   I +    +E  + I++R   L      DE      + +  T   
Sbjct: 686 RPFDLDEAIIRRFERRIMVGLPSMESRELIMRR---LLSKEKVDEGLDYKEL-ATMTEGY 741

Query: 222 AGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257
           +G  L+ +   A     + + +      L ++  +K
Sbjct: 742 SGSDLKNLCTTAAYRPVRELIQRERKKELEKMKREK 777


>gi|283455169|ref|YP_003359733.1| DNA polymerase III subunits gamma and tau [Bifidobacterium dentium
           Bd1]
 gi|283101803|gb|ADB08909.1| DNA polymerase III subunits gamma and tau [Bifidobacterium dentium
           Bd1]
          Length = 851

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 75/232 (32%), Gaps = 29/232 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     RP T +   GQ +    L   ++  K     L H  LF GP G GKT+ A+++A
Sbjct: 4   ALYRRYRPDTFDGVIGQDQVTVPLMRALDEGK-----LTHAYLFSGPRGCGKTSSARILA 58

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDR----DVLFIDEIHRLSIIVEEILY----- 126
           R +        GP     G+  +            DV+ ID      +     L      
Sbjct: 59  RCVNCEK----GPTSHPCGECESCRDLATGGPGSIDVVEIDAASHNGVDDARELRERAGF 114

Query: 127 -PAMEDFQLDLMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
            PA + +++ ++         G     + V+        I ATT    +   ++ R    
Sbjct: 115 APARDRYKIFILDEAHMVTPQGFNALLKIVEEPPEHVMFIFATTEPDKVIGTIRSR-THH 173

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
                   E +   ++R      +               G+ R    +L ++
Sbjct: 174 YPFRLVPQEVMGPYLERICSDEHIEAEPGVLRLAMRAGGGSVRDTLSVLDQL 225


>gi|301118150|ref|XP_002906803.1| ATPase [Phytophthora infestans T30-4]
 gi|262108152|gb|EEY66204.1| ATPase [Phytophthora infestans T30-4]
          Length = 581

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 47/214 (21%), Positives = 80/214 (37%), Gaps = 12/214 (5%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-----AGDLAALLTNLEDRD--V 108
           VLF GPPG GKT  A+++A++ G+         V++K        ++A+    E  D  +
Sbjct: 362 VLFEGPPGTGKTLSARIIAQQAGIPMIHIPIESVVSKWYGDSEKKMSAIFDACEKLDGAI 421

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +FIDEI  L+               L +++ +     S K    + T++ AT R   L  
Sbjct: 422 IFIDEIDALAGDRSGGTMHEASRRILSVLLQKVEGFASAK----KTTVVCATNRKQDLDA 477

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            L  RF + IR N  + +  + +  R AK        + A   +  S    +       R
Sbjct: 478 ALISRFDLSIRYNLPDEKTRRAVFGRYAKQLSDEELSQLAAVSSQLSCRDIKEICEYAER 537

Query: 229 VRDFAEVAHAKTITREIADAALLRLAIDKMGFDQ 262
                 +   +T         +  + I   G   
Sbjct: 538 KWASKVLKKEETAELPTLRTYMEAVKIHMGGISS 571


>gi|186513260|ref|NP_194210.2| ATP binding / DNA binding / DNA-directed DNA polymerase
           [Arabidopsis thaliana]
 gi|186513264|ref|NP_001119046.1| ATP binding / DNA binding / DNA-directed DNA polymerase
           [Arabidopsis thaliana]
 gi|332659557|gb|AEE84957.1| AAA-type ATPase family protein [Arabidopsis thaliana]
 gi|332659558|gb|AEE84958.1| AAA-type ATPase family protein [Arabidopsis thaliana]
          Length = 857

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 46/238 (19%), Positives = 84/238 (35%), Gaps = 26/238 (10%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            +LSR++SQ+       RP++ +E  GQ      L   I     R       LF GP G 
Sbjct: 235 EVLSRSLSQK------FRPKSFDELVGQEVVVKCLLSTI----LRGRITSVYLFHGPRGT 284

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSII 120
           GKT+ +++ A  L    ++          +  +  +    RDV+  D         L  +
Sbjct: 285 GKTSTSKIFAAALNCLSQAAHSRPCGLCSECKSYFSG-RGRDVMETDSGKLNRPSYLRSL 343

Query: 121 VEEILYPAMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           ++    P +       ++ E         G    S+         I  T+ +  L   + 
Sbjct: 344 IKSASLPPVSSRFKVFIIDECQLLCQETWGTLLNSLDNFSQHSVFILVTSELEKLPRNVL 403

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
            R          + + + T + +     G+     A   IA +S G+ R A  +L ++
Sbjct: 404 SRSQKYHFSKVCDAD-ISTKLAKICIEEGIDFDQGAVDFIASKSDGSLRDAEIMLDQL 460


>gi|156094884|ref|XP_001613478.1| cell division cycle ATPase [Plasmodium vivax SaI-1]
 gi|148802352|gb|EDL43751.1| cell division cycle ATPase, putative [Plasmodium vivax]
          Length = 1089

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 58/259 (22%), Positives = 92/259 (35%), Gaps = 25/259 (9%)

Query: 26   TLEEFTGQVEACSNLK--VFIEA------AKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
            T E+  G  +    LK  +          AK  +     +L  GPPG GKT LA+ +A E
Sbjct: 794  TWEDIGGMQDVKEQLKETILYPLEYKHLYAKFNSNYNKGILLYGPPGCGKTLLAKAIANE 853

Query: 78   LGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAM 129
               NF S  GP +     G+  A + +L D+       ++F DEI  L+           
Sbjct: 854  CNANFISVKGPELLTMWFGESEANVRDLFDKARAASPCIIFFDEIDSLAKERNSNNNNDA 913

Query: 130  EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
             D  ++ ++ E               +IAAT R  +L   L    R    I ++  + + 
Sbjct: 914  SDRVINQILTEI----DGINEKKTIFIIAATNRPDILDKALTRPGRLDKLIYISLPDYKS 969

Query: 188  LKTIVQRGAKLTGLAVTDEAACEIAMRSRGT--PRIAGRLLRRVRDFAEVAHAKTITREI 245
              +I +   K T L+  D    E+A R+ G     I       V +  +        R+ 
Sbjct: 970  RCSIFKAILKNTPLS-ADVNLHEMAKRTEGFSGADITNLCQSAVNEAIKETIRLVSQRKG 1028

Query: 246  ADAALLRLAIDKMGFDQLD 264
                      +    D  D
Sbjct: 1029 GPEKRSGAKANGGADDHYD 1047



 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 76/221 (34%), Gaps = 34/221 (15%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAE--------ALDH 56
           E  L+R   +E  D       T E+  G  +  + ++  IE      E        A   
Sbjct: 458 EEYLNREDYEEHTDD-----ITYEDLGGMKKQLNKIRELIELPLKYPEIFISIGISAPKG 512

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--V 108
           VL  G PG GKT++A+ +A E        +GP I           L  +     ++   +
Sbjct: 513 VLMHGIPGTGKTSIAKAIANESNAYCYIINGPEIMSKHIGESEQKLRKIFKKASEKTPCI 572

Query: 109 LFIDEIH---RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
           +FIDEI             L   +    L LM G   +   +        ++AAT R   
Sbjct: 573 IFIDEIDSIANKRSKSTNELEKRVVSQLLTLMDGLKKNNNVL--------VLAATNRPNS 624

Query: 166 LTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVT 204
           +   L+   RF   I +   + +    I+    K   L   
Sbjct: 625 IDPALRRFGRFDREIEIPVPDEQGRYEILLTKTKKMKLDAD 665


>gi|4220511|emb|CAA22984.1| DNA polymerase III like protein [Arabidopsis thaliana]
 gi|7269330|emb|CAB79389.1| DNA polymerase III like protein [Arabidopsis thaliana]
          Length = 815

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 46/238 (19%), Positives = 84/238 (35%), Gaps = 26/238 (10%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            +LSR++SQ+       RP++ +E  GQ      L   I     R       LF GP G 
Sbjct: 235 EVLSRSLSQK------FRPKSFDELVGQEVVVKCLLSTI----LRGRITSVYLFHGPRGT 284

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSII 120
           GKT+ +++ A  L    ++          +  +  +    RDV+  D         L  +
Sbjct: 285 GKTSTSKIFAAALNCLSQAAHSRPCGLCSECKSYFSG-RGRDVMETDSGKLNRPSYLRSL 343

Query: 121 VEEILYPAMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           ++    P +       ++ E         G    S+         I  T+ +  L   + 
Sbjct: 344 IKSASLPPVSSRFKVFIIDECQLLCQETWGTLLNSLDNFSQHSVFILVTSELEKLPRNVL 403

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
            R          + + + T + +     G+     A   IA +S G+ R A  +L ++
Sbjct: 404 SRSQKYHFSKVCDAD-ISTKLAKICIEEGIDFDQGAVDFIASKSDGSLRDAEIMLDQL 460


>gi|254424470|ref|ZP_05038188.1| ATP-dependent metallopeptidase HflB subfamily [Synechococcus sp.
           PCC 7335]
 gi|196191959|gb|EDX86923.1| ATP-dependent metallopeptidase HflB subfamily [Synechococcus sp.
           PCC 7335]
          Length = 630

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 57/273 (20%), Positives = 98/273 (35%), Gaps = 23/273 (8%)

Query: 27  LEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVARELG 79
            ++  G  EA   L+  +   K         A     VL VGPPG GKT LA+ +A E G
Sbjct: 173 FDDVAGIEEAKEELQEVVTFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG 232

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMED 131
             F S SG           A  +  L    ++    ++FIDEI  +       +    ++
Sbjct: 233 TPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIIFIDEIDAVGRSRGAGIGGGNDE 292

Query: 132 FQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            +  L  ++ E               +IAAT R  +L + L    RF   + ++  +I+ 
Sbjct: 293 REQTLNQLLTEMDGFEGNTG----IIVIAATNRADVLDSALLRPGRFDRQVSVDPPDIKG 348

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            + +++  A+   ++               T      LL            + +T    D
Sbjct: 349 RREVLEVHARDKKVSDDLSLDAIARRTPGFTGADLANLLNEAAILTARRRKEAVTMLEID 408

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV 280
            A+ R+     G    D +   +IA +  G  +
Sbjct: 409 DAIDRVIAGMEGTPLTDGKSKRLIAYHEVGHAI 441


>gi|325846695|ref|ZP_08169610.1| DNA polymerase III, subunit gamma and tau [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325481453|gb|EGC84494.1| DNA polymerase III, subunit gamma and tau [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 580

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 81/223 (36%), Gaps = 25/223 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+   +  GQ    + LK  +++ +         LF G  G GKTT A++ A+ +    
Sbjct: 10  RPQKFSDVLGQERVVNVLKNQVKSGQISHAY----LFAGERGCGKTTCAKIFAKAINCLN 65

Query: 83  RSTSGP--VIAKAGDLAALLTNLEDRDVLFIDEIHR-----LSIIVEEILYPAMEDFQLD 135
              S P  +      +    T     DV+ +D         +  + E ++YP        
Sbjct: 66  PIDSSPCGICENCKSIEEESTM----DVVEMDAASNRRIDDIRNLKETVVYPPNNLKYKV 121

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             + ++   S    I ATT +  +   +  R       N    +
Sbjct: 122 YIIDEAHMITREAFNALLKIMEEPPSHLVFILATTEIEKIPKTILSRVQ-KFEFNKIGRD 180

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           D+   +        +++ DEA   I  +++G  R A  +L +V
Sbjct: 181 DIIKQIDIILNDRNISMEDEAKDLIVKKAKGAMRDALSILDQV 223


>gi|171741491|ref|ZP_02917298.1| hypothetical protein BIFDEN_00576 [Bifidobacterium dentium ATCC
           27678]
 gi|171277105|gb|EDT44766.1| hypothetical protein BIFDEN_00576 [Bifidobacterium dentium ATCC
           27678]
          Length = 851

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 75/232 (32%), Gaps = 29/232 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     RP T +   GQ +    L   ++  K     L H  LF GP G GKT+ A+++A
Sbjct: 4   ALYRRYRPDTFDGVIGQDQVTVPLMRALDEGK-----LTHAYLFSGPRGCGKTSSARILA 58

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDR----DVLFIDEIHRLSIIVEEILY----- 126
           R +        GP     G+  +            DV+ ID      +     L      
Sbjct: 59  RCVNCEK----GPTSHPCGECESCRDLATGGPGSIDVVEIDAASHNGVDDARELRERAGF 114

Query: 127 -PAMEDFQLDLMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
            PA + +++ ++         G     + V+        I ATT    +   ++ R    
Sbjct: 115 APARDRYKIFILDEAHMVTPQGFNALLKIVEEPPEHVMFIFATTEPDKVIGTIRSR-THH 173

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
                   E +   ++R      +               G+ R    +L ++
Sbjct: 174 YPFRLVPQEVMGPYLERICSDEHIEAEPGVLRLAMRAGGGSVRDTLSVLDQL 225


>gi|153854738|ref|ZP_01995972.1| hypothetical protein DORLON_01970 [Dorea longicatena DSM 13814]
 gi|149752645|gb|EDM62576.1| hypothetical protein DORLON_01970 [Dorea longicatena DSM 13814]
          Length = 523

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 57/268 (21%), Positives = 93/268 (34%), Gaps = 26/268 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP   E+  GQ      LK  I A +         LF G  G GKTT+A++ A+
Sbjct: 5   ALYRKFRPDEFEDVKGQDAIVRTLKNQINADRIGHAY----LFCGTRGTGKTTVAKIFAK 60

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +         P   +     ++        V+ ID      +  +  I EE+ Y   E 
Sbjct: 61  AVNCEHPVDGSP-CGECAMCKSIAAGTSMN-VIEIDAASNNGVDNIREIREEVTYRPTEG 118

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT    +   +  R         
Sbjct: 119 KYKVYIIDEVHMLSIGAFNALLKTLEEPPEYVIFILATTEAHKIPITILSRCQRYDFKRI 178

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
             IE +   ++      G  V D+A   IA  + G+ R +  LL +   F      +T+T
Sbjct: 179 -SIETIAARLRELIDKEGWDVEDKAVRYIAKMADGSMRDSLSLLDQCAAFYM---NETLT 234

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTM 270
            +     L   A+D   F +L  + L M
Sbjct: 235 YDHVLEVL--GAVDTEVFSRLLRQLLAM 260


>gi|312377117|gb|EFR24029.1| hypothetical protein AND_11685 [Anopheles darlingi]
          Length = 834

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 85/257 (33%), Gaps = 23/257 (8%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVAR 76
            T  +  G       L+  ++      +            VLF GPPG GKT LA+ +A 
Sbjct: 471 TTWTDIGGLENVKRELQELVQYPVEHPDKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIAN 530

Query: 77  ELGVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127
           E   NF S  GP +         A   D+     +     VLF DE+  ++      +  
Sbjct: 531 ECQANFISVKGPELLTMWFGESEANVRDIFDKARSASP-CVLFFDELDSIAKSRGGNVGD 589

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           A      D ++ +  +            +I AT R  ++   +    R    I +   + 
Sbjct: 590 A--GGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDD 647

Query: 186 EDLKTIVQRGAKLTGLAVT-DEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +  + I++   + + +A   D        +      +     R  +     A    I RE
Sbjct: 648 KSREAILKANLRKSPVAEDVDLNYVAKVTQGFSGADLTEICQRACKLAIRQAIESEIRRE 707

Query: 245 IADAALLRLAIDKMGFD 261
              AA    A+D    D
Sbjct: 708 RDRAANQSSAMDMDEED 724



 Score = 54.3 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 53/263 (20%), Positives = 89/263 (33%), Gaps = 38/263 (14%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARA--------EALDHVLFVGPPGLGKTTLAQVVARELG 79
           ++  G  +  + +K  +E              +    +L  GPPG GKT +A+ VA E G
Sbjct: 201 DDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVANETG 260

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMED 131
             F   +GP I          +L       E     ++FIDEI  ++   E+        
Sbjct: 261 AFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAIIFIDEIDAIAPKREKTHGEVERR 320

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
               L+       +S     S   ++AAT R   +   L+   RF   I +   +     
Sbjct: 321 IVSQLLTLMDGMKKS-----SHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRL 375

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            +++   K   LA  D    +IA  S G        L               +       
Sbjct: 376 EVLRIHTKNMKLA-DDVDLEQIAAESHGHVGADLASL--------------CSEAALQQI 420

Query: 250 LLRLAIDKMGFDQLDLRYLTMIA 272
             ++ +  +  DQ+D   L  +A
Sbjct: 421 REKMDLIDLEDDQIDAEVLNSLA 443


>gi|183600059|ref|ZP_02961552.1| hypothetical protein PROSTU_03591 [Providencia stuartii ATCC 25827]
 gi|188022344|gb|EDU60384.1| hypothetical protein PROSTU_03591 [Providencia stuartii ATCC 25827]
          Length = 643

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 50/259 (19%), Positives = 78/259 (30%), Gaps = 59/259 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+   +  GQ    + L     A     + L H  LF G  G+GKTT+A++ A+ L   
Sbjct: 11  RPQKFSDVVGQQHVLTAL-----ANGLEHQRLHHAYLFSGTRGVGKTTIARLFAKGLNCE 65

Query: 82  F------------------------RSTSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                             K  D   LL N++         V  I
Sbjct: 66  TGITATPCGKCTNCQEIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSRHSFNALLKTLEE------------------PPEHVKFLLATTDPQKLPVTIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L   ++  +   ++       +     A   I+  + G+ R A  L     D
Sbjct: 168 SRC-LQFHLKALDVSQISEQLEHILTAENIEHDTRARQLISRAADGSLRDALSL----TD 222

Query: 232 FAEVAHAKTITREIADAAL 250
            A       +T +I    L
Sbjct: 223 QAIAMGQGKVTADIVSQML 241


>gi|156087400|ref|XP_001611107.1| cell division protein metalloprotease FtsH [Babesia bovis T2Bo]
 gi|154798360|gb|EDO07539.1| cell division protein metalloprotease FtsH, putative [Babesia
           bovis]
          Length = 658

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 56/250 (22%), Positives = 95/250 (38%), Gaps = 22/250 (8%)

Query: 27  LEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVARELG 79
            ++  G  EA   L   ++  K         A+    VL VGPPG GKT LA+ VA E  
Sbjct: 214 FKDIMGIDEAKEELMEVVKFIKQPKLYHDIGAKIPKGVLLVGPPGTGKTMLAKAVATEAN 273

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMED 131
           + F  TSGP          A  +  L      +   ++FIDEI  +              
Sbjct: 274 IPFIYTSGPEFVEIFVGQGAQRVRNLFAKARKQAPCIVFIDEIDAIGAKRASGSLGGQNR 333

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
              D  + +           +  T++AAT R+  L   L    RF   + +    ++  +
Sbjct: 334 EH-DQTLNQLLVEMDGFNLSTGITVLAATNRMEALDRALLRPGRFDRVVHIPLPSLDGRE 392

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            I++R          +     +A   + TP  +G  L+ + + A +   ++   +++   
Sbjct: 393 AILKRYLSGIKYDKDNVDVRALA---KLTPGYSGADLKNLVNEAALNCVRSGRTQVSTTD 449

Query: 250 LLRLAIDKMG 259
           L   A DK+G
Sbjct: 450 LQE-ARDKVG 458


>gi|308048898|ref|YP_003912464.1| DNA polymerase III, subunits gamma and tau [Ferrimonas balearica
           DSM 9799]
 gi|307631088|gb|ADN75390.1| DNA polymerase III, subunits gamma and tau [Ferrimonas balearica
           DSM 9799]
          Length = 830

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 56/172 (32%), Gaps = 38/172 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP + ++  GQ      L   +E        L H  LF G  G+GKT++A+++A+ L   
Sbjct: 11  RPASFDQVVGQEHVLKALTHALE-----QNRLHHAYLFTGTRGVGKTSIARLLAKGLNCE 65

Query: 82  F------------------------RSTSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                             K  D   +L N++         V  I
Sbjct: 66  TGITATPCGQCSHCREISEGRFVDLLEIDAASRTKVDDTREILDNVQYQPVRGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMED--FQLDLMVGEGPSARSVKINLSRFTLIAATT 161
           DE+H LS      L   +E+    +  ++      +     LSR       +
Sbjct: 126 DEVHMLSRHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFNLKS 177


>gi|296232625|ref|XP_002761658.1| PREDICTED: lon protease homolog, mitochondrial isoform 1
           [Callithrix jacchus]
          Length = 960

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 70/192 (36%), Gaps = 33/192 (17%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI  ++ R      +L F GPPG+GKT++A+ +AR L   +   S
Sbjct: 489 EDHYGMEDVKKRILEFIAVSQLRGSTQGKILCFYGPPGVGKTSIARSIARALNREYFRFS 548

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ ++    +        
Sbjct: 549 VGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLILIDEVDKIGRGYQGDPSSALL 608

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V ++LS+   I        +  PL+DR  +     +
Sbjct: 609 ELLDPEQNANFLD-------HYLDVPVDLSKVLFICTANVTDTIPEPLRDRMEVISVSGY 661

Query: 183 YEIEDLKTIVQR 194
              E L  I +R
Sbjct: 662 VAQEKLA-IAER 672


>gi|257126791|ref|YP_003164905.1| DNA polymerase III subunits gamma and tau [Leptotrichia buccalis
           C-1013-b]
 gi|257050730|gb|ACV39914.1| DNA polymerase III, subunits gamma and tau [Leptotrichia buccalis
           C-1013-b]
          Length = 524

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 43/246 (17%), Positives = 82/246 (33%), Gaps = 61/246 (24%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKA--RAEALDHV-LFVGPPGLGKTTLAQVVAR 76
              RP+  +E  GQ            A K   R   L H  LF GP G+GKTT+A+++A+
Sbjct: 7   RKYRPQNFDEIAGQEFVL-------RAIKNSLRENKLSHAYLFTGPRGVGKTTIARLIAK 59

Query: 77  ELGV--------------------------NFRSTSGPVIAKAGDLAALLTNL------E 104
            +                            +             ++  L   +       
Sbjct: 60  GVNCLNSENVTDNPCGECENCREISQGISMDMIEIDAASNRGIDEIRELKEKINYQPVKG 119

Query: 105 DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164
            + +  IDE+H L+      L   +E+                    S    I ATT + 
Sbjct: 120 RKKIYIIDEVHMLTKEAFNALLKTLEE------------------PPSHVIFILATTEID 161

Query: 165 LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGR 224
            + + +  R          + +D+K +++  A+   + + + +   I  +S G+ R +  
Sbjct: 162 KIPDTVISRCQ-RYDFLPIDKKDIKKLLKNVAEKEKITIDEASLDLIYRKSEGSARDSFS 220

Query: 225 LLRRVR 230
           +  +V 
Sbjct: 221 IFEQVV 226


>gi|327400638|ref|YP_004341477.1| AAA family ATPase [Archaeoglobus veneficus SNP6]
 gi|327316146|gb|AEA46762.1| AAA family ATPase, CDC48 subfamily [Archaeoglobus veneficus SNP6]
          Length = 734

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 69/298 (23%), Positives = 104/298 (34%), Gaps = 47/298 (15%)

Query: 20  SLLR------PR-TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPG 64
           S +R      P+   E+  G   A   LK  +E      E            +L  GPPG
Sbjct: 441 SAMREVLVEVPKIRWEDIGGLEHAKQELKEAVEWPLKYPEVFETVDIKPPKGILLFGPPG 500

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLAALLTNLEDRD------VLFIDEIHR 116
            GKT LA+ VA E   NF S  GP +     G+    +  +  +       VLF DEI  
Sbjct: 501 TGKTLLAKAVANESNANFISVKGPELLSKWVGESEKHVREMFRKARQVAPCVLFFDEIDS 560

Query: 117 LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
           L+          + +  +  ++ E          L    +IAAT R  ++   L     I
Sbjct: 561 LAPRRGGGADSHVTERVVSQLLTE----LDGMEELKDVVVIAATNRPDIVDPALLRPGRI 616

Query: 177 PIRLNFYEIE-----DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTP----RIAGRLLR 227
              +     +     ++  I  RG  L      DE A +    S        R AG L  
Sbjct: 617 ERHIYIPPPDKKARKEIFKIHLRGKPLADDVSIDELAEKTEGYSGADIEAVCREAGMLAI 676

Query: 228 RV--------RDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGG 277
           R          +  E+A    IT++  + AL ++   K    + D++    I  NF  
Sbjct: 677 REALKPGLTREEAKELAKKIKITKKHFEKALEKV---KPSLTKDDVKRYEQIIENFHK 731



 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 54/212 (25%), Positives = 83/212 (39%), Gaps = 32/212 (15%)

Query: 26  TLEEFTGQVEACSNLKVFIEAA-----------KARAEALDHVLFVGPPGLGKTTLAQVV 74
           T E+  G       L++  E             +   +    VL  GPPG GKT +A+ V
Sbjct: 179 TYEDIGG---LKRELRLVREMIELPLKHPELFQRLGIDPPKGVLLYGPPGTGKTLIAKAV 235

Query: 75  ARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILY 126
           A E+  +F S SGP I           L  +    ++    ++FIDEI  ++   EE+  
Sbjct: 236 ANEVNAHFISISGPEIMSKYYGESEQRLREIFEEAKENAPSIIFIDEIDSIAPKREEVTG 295

Query: 127 PAMEDFQLDLM-VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183
                    L+ + +G  AR          +IAAT R   L   L+   RF   I +   
Sbjct: 296 EVERRVVAQLLALMDGLEAR------GDVIVIAATNRPDALDPALRRPGRFDREIEIGVP 349

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRS 215
           + E  K I++   +   LA  D    E+A  +
Sbjct: 350 DREGRKEILEIHTRGMPLA-EDVNLDELADHT 380


>gi|317144506|ref|XP_001820171.2| protein YME1 [Aspergillus oryzae RIB40]
          Length = 805

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 58/260 (22%), Positives = 96/260 (36%), Gaps = 27/260 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G  EA   L+  +E        +    +    VL VGPPG GKT LA+ VA E 
Sbjct: 332 RFTDVHGCDEAKEELQELVEFLLNPERFSSLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 391

Query: 79  GVNFRSTSGPVIA------KAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAME 130
           GV F   SG           A  +  L T    +   ++FIDE+  +     E    A  
Sbjct: 392 GVPFFYMSGSEFDEVYVGVGAKRVRELFTQARSKAPAIIFIDELDAIGAKRNER-DAAYV 450

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
              L+ ++ E           S   +IAAT    LL   L    RF   + ++  ++   
Sbjct: 451 KQTLNQLLTELDGFSQT----SGVIIIAATNYPQLLDKALTRPGRFDRRVVVDLPDVRGR 506

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             I++   K   ++       ++A+ +RGTP  +G  L  + + A +  ++    ++   
Sbjct: 507 MDILRHHMKDVQISTD----VDVAVIARGTPGFSGADLENLVNQAAIFASRNKQAKVGPR 562

Query: 249 ALLRLAI-DKMGFDQLDLRY 267
                     MG +      
Sbjct: 563 DFDWAKDKIMMGAEARSRVI 582


>gi|237796782|ref|YP_002864334.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum Ba4 str.
           657]
 gi|229261886|gb|ACQ52919.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum Ba4 str.
           657]
          Length = 658

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 65/262 (24%), Positives = 103/262 (39%), Gaps = 33/262 (12%)

Query: 26  TLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T E+  GQ EA  +L   +          +  A+     L VGPPG GKT LA+ VA E 
Sbjct: 163 TFEDVAGQDEAKESLVEIVDFLHKPERYTEIGAKLPKGALLVGPPGTGKTLLAKAVAGEA 222

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  L    +++   ++FIDEI  +    +  +    E
Sbjct: 223 KVPFFSLSGSSFVEMFVGMGAARVRDLFEQAQEKAPCIIFIDEIDAIGKSRDNAMSSNDE 282

Query: 131 -DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ-----DRFGIPIRLNFYE 184
            +  L+ ++ E     S K       ++AAT R  +L   L      DR  I  R +   
Sbjct: 283 REQTLNQLLAEMDGFDSSKG----VVILAATNRPEILDKALLRPGRFDRRVIVDRPDLKG 338

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            ED+  +  +G K++        A       + TP   G  L  + + A +   K   +E
Sbjct: 339 REDILKVHSKGVKISKEVDMSSIA-------KSTPGAVGSDLANIINEAALRAVKNGRQE 391

Query: 245 IADAALLR-LAIDKMGFDQLDL 265
           +    L   + +   G ++ D 
Sbjct: 392 VIQEDLEEAVEVIIAGKEKKDR 413


>gi|195447178|ref|XP_002071099.1| GK25619 [Drosophila willistoni]
 gi|194167184|gb|EDW82085.1| GK25619 [Drosophila willistoni]
          Length = 355

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 58/168 (34%), Gaps = 27/168 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RPR++E+   Q E  + LK  +E A      L ++L  GPPG GKT+      R
Sbjct: 32  PWVEKYRPRSVEDVVEQSEVVAVLKKCVEGAD-----LPNMLLYGPPGTGKTSTILAAGR 86

Query: 77  ------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD--------VLFIDEIHR 116
                       EL  +       V  K  + A L  +    D        ++ +DE   
Sbjct: 87  QIFGDMYRDRILELNASDERGINVVRTKIKNFAQLSASNVRPDGRPCPPFKIIILDEADS 146

Query: 117 LSIIVEEILYPAM--EDFQLDLMVGEGPSARSVKINLSRFTLIAATTR 162
           ++   +  L   M  E       +     +R +    SR T     + 
Sbjct: 147 MTHAAQAALRRTMEKESRSTRFCLICNYVSRIIVPITSRCTKFRFKSL 194


>gi|42560753|ref|NP_975204.1| hypothetical protein MSC_0201 [Mycoplasma mycoides subsp. mycoides
           SC str. PG1]
 gi|42492249|emb|CAE76846.1| Hypothetical protein MSC_0201 [Mycoplasma mycoides subsp. mycoides
           SC str. PG1]
 gi|301320829|gb|ADK69472.1| conserved hypothetical protein [Mycoplasma mycoides subsp. mycoides
           SC str. Gladysdale]
          Length = 267

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 82/221 (37%), Gaps = 19/221 (8%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRS 84
           + +EE  GQ +  + L++ I+  K        +L +G  G+GK  +++ +      N   
Sbjct: 2   KIIEEIVGQEKILNKLEIIIKEHKQNKTPFPFILIIGKQGMGKFKISKWIHSHFDSNAIG 61

Query: 85  TSGPVIAKAGDLAALLTNLEDRDV---LFIDEIHRLSIIVEEILYPAMED---------F 132
               +     D    L +   R++     + +  ++    ++ L    +           
Sbjct: 62  VMSALFFN-KDSLPFLVHFSQREIDHTSCLFKPEKVDKNSQKFLDFIFKRDLKNINKTLI 120

Query: 133 QLDLMVGEGPSARSVKIN------LSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           ++D +        + ++       L+ F  I  +     L+  L ++F     +  Y  +
Sbjct: 121 KIDKLNKSSTCQYNTELLPITLEQLNNFRFICFSESKNDLSKNLLNKFDYIFEIEPYTYK 180

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
            +K+I+ +    T    T+ +   I   SR  P IA  LL+
Sbjct: 181 GIKSILHKDLMHTNNYFTNNSIKHIIYHSRLNPEIAKLLLK 221


>gi|3892650|dbj|BAA34546.1| ruvB [Clostridium histolyticum]
          Length = 54

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 33/54 (61%)

Query: 2  MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALD 55
          M+   + S  + ++  +   LRP+ L E+ GQ +  +NL VFI+AAK R E+LD
Sbjct: 1  MENRIITSSLMDEDLNNEFSLRPQKLNEYIGQKKVKTNLNVFIKAAKNRNESLD 54


>gi|170757175|ref|YP_001782967.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum B1 str.
           Okra]
 gi|169122387|gb|ACA46223.1| ATP-dependent metallopeptidase HflB [Clostridium botulinum B1 str.
           Okra]
          Length = 658

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 65/262 (24%), Positives = 103/262 (39%), Gaps = 33/262 (12%)

Query: 26  TLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T E+  GQ EA  +L   +          +  A+     L VGPPG GKT LA+ VA E 
Sbjct: 163 TFEDVAGQDEAKESLVEIVDFLHKPERYTEIGAKLPKGALLVGPPGTGKTLLAKAVAGEA 222

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  L    +++   ++FIDEI  +    +  +    E
Sbjct: 223 KVPFFSLSGSSFVEMFVGMGAARVRDLFEQAQEKAPCIIFIDEIDAIGKSRDNAMSSNDE 282

Query: 131 -DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ-----DRFGIPIRLNFYE 184
            +  L+ ++ E     S K       ++AAT R  +L   L      DR  I  R +   
Sbjct: 283 REQTLNQLLAEMDGFDSSKG----VVILAATNRPEILDKALLRPGRFDRRVIVDRPDLKG 338

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            ED+  +  +G K++        A       + TP   G  L  + + A +   K   +E
Sbjct: 339 REDILKVHSKGVKISKEVDMSSIA-------KSTPGAVGSDLANIINEAALRAVKNGRQE 391

Query: 245 IADAALLR-LAIDKMGFDQLDL 265
           +    L   + +   G ++ D 
Sbjct: 392 VIQEDLEEAVEVIIAGKEKKDR 413


>gi|315656174|ref|ZP_07909065.1| cell division protein FtsH [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|315493176|gb|EFU82776.1| cell division protein FtsH [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 759

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 61/249 (24%), Positives = 91/249 (36%), Gaps = 29/249 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  EA   L+   E         K  A+    VL  GPPG GKT LA+ VA E 
Sbjct: 185 TFADVAGVNEAVEELQEIKEFLAEPEKFHKLGAKIPKGVLLYGPPGTGKTLLARAVAGEA 244

Query: 79  GVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           GV F S SG            ++  DL           ++F+DEI  +       L    
Sbjct: 245 GVPFFSMSGSEFVEMFVGMGASRVRDLFEQARAAAP-AIIFVDEIDAVGRHRGTGLGGGH 303

Query: 130 EDFQLD----LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183
           ++ +      L+  +G   R+  I      +IAAT R  +L   L    RF   + +   
Sbjct: 304 DEREQTLNQLLVEMDGFDERTNVI------MIAATNRADVLDPALLRPGRFDRQVAVEAP 357

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           +++  + I+   AK   L    +           T      +L      A     +TIT 
Sbjct: 358 DLKGREAILAVHAKNKPLDPETDIKSLAKRSPGFTGADLANVLNEAALLAARHSRETITA 417

Query: 244 EIADAALLR 252
           +  D A+ R
Sbjct: 418 QDLDEAVDR 426


>gi|212224263|ref|YP_002307499.1| Hypothetical CDC48/VCP [Thermococcus onnurineus NA1]
 gi|212009220|gb|ACJ16602.1| Hypothetical CDC48/VCP [Thermococcus onnurineus NA1]
          Length = 797

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 58/271 (21%), Positives = 98/271 (36%), Gaps = 38/271 (14%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
           T E+  G  +    ++  IE      E            VL  GPPG GKT LA+ VA E
Sbjct: 180 TYEDIGGLKDVIQKVREMIELPLKHPEIFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANE 239

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM 129
              +F + +GP I           L  +    E+    ++FIDEI  ++   EE      
Sbjct: 240 ANAHFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKREE-----T 294

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                  +V +  +      +  +  +IAAT R   +   L+   RF   + +   + + 
Sbjct: 295 HGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDAIDPALRRPGRFDRELEVGVPDKQG 354

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL-----LRRVRDFAEVAHAKTIT 242
            K I+Q   +   +        E   R     +I   L      R V D A     +  T
Sbjct: 355 RKEILQIHTRGMPI--------EPEFRVSKVKKILENLRGDERFRDVIDRAIEKVERAKT 406

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIAR 273
            E     L    +D+  +D++ ++ +  +  
Sbjct: 407 EEEVKEIL--RELDERLYDEVKVKLIDDLLE 435



 Score = 53.9 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 58/284 (20%), Positives = 96/284 (33%), Gaps = 39/284 (13%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVARE 77
             ++  G  +    LK  +E      EA           +L  GPPG GKT LA+ VA E
Sbjct: 515 RWDDIGGLEDVKQELKEAVEWPLKYPEAFLGLGITPPKGILLYGPPGTGKTLLAKAVATE 574

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAM 129
              NF +  GP +          ++  +          V+FIDEI  ++      +    
Sbjct: 575 SEANFIAIRGPEVLSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRGTDV---- 630

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            +   D ++ +  +        S   +IAAT R  ++   L    RF   I +   + + 
Sbjct: 631 -NRVTDRLINQLLTEMDGIAENSGVVVIAATNRPDIIDPALLRPGRFDRLILVPAPDEKA 689

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSR--------GTPRIAGRLLRRVRDFAEVAHAK 239
              I +   +   LA  D +  E+A R+            R A  L  R      V    
Sbjct: 690 RLEIFKVHTRNVPLA-EDISLEELARRTEGYTGADIAAVVREAAMLAMRKALQEGVIKPG 748

Query: 240 TITREIADAALLRLAIDKMGFDQL-------DLRYLTMIARNFG 276
               EI     + +A  +   +++        + Y   I   F 
Sbjct: 749 MKADEIKQKVKVTMADFEEALEKIGPSVSKETMEYYKKIQEQFK 792


>gi|168334136|ref|ZP_02692345.1| ATP-dependent metalloprotease FtsH [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 577

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 57/245 (23%), Positives = 95/245 (38%), Gaps = 26/245 (10%)

Query: 43  FIEA----AKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA------K 92
           FI+A    A   A     ++F GPPG GKT +A+ +A+E  V F S SG           
Sbjct: 166 FIKAPHKYADMGATMPKGLIFYGPPGTGKTMMAKALAKEANVPFFSVSGSDFMQMYVGVG 225

Query: 93  AGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEI---LYPAMEDFQLDLMVGEGPSARSV 147
           A  +  L    +  ++ V+FIDEI  +               +D  L+ ++ E     S 
Sbjct: 226 ASRIRELFREAKKSEKAVIFIDEIDAIGKXRSNTPGGSGSDEKDQTLNALLTEMSGFNSA 285

Query: 148 KINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTD 205
              +    +IAAT R+ +L   L    RF   I++ + + E  K I+     L       
Sbjct: 286 SGXV----VIAATNRLDILDEALLRPGRFDRHIQIGYPDQEARKHILS----LYLQNKPI 337

Query: 206 EAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKM-GFDQLD 264
           +A+  +   S  T    G +L    + A +   K     I      +     + G ++ D
Sbjct: 338 DASVNVEKISEETLYFTGAMLENFVNEAAIMAVKENVAAITATXFDKAFYTVIAGSEKKD 397

Query: 265 LRYLT 269
              ++
Sbjct: 398 RSMIS 402


>gi|51891264|ref|YP_073955.1| cell division protein [Symbiobacterium thermophilum IAM 14863]
 gi|81389821|sp|Q67T82|FTSH2_SYMTH RecName: Full=ATP-dependent zinc metalloprotease FtsH 2
 gi|51854953|dbj|BAD39111.1| cell division protein [Symbiobacterium thermophilum IAM 14863]
          Length = 587

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 60/249 (24%), Positives = 86/249 (34%), Gaps = 24/249 (9%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAR 76
           P T  +  G  E    L+  ++  K         A     VL  GPPG GKT LA+ VA 
Sbjct: 148 PVTFADVAGMDEVKGELEEIVDYLKNPDKYRAIGARIPKGVLLYGPPGTGKTLLARAVAG 207

Query: 77  ELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPA 128
           E GV F + SG       V   A  +  L          ++FIDEI  +           
Sbjct: 208 EAGVPFFALSGSSFVELFVGMGASRVRELFAQARKNAPCIVFIDEIDAVGRQRGSAAVVG 267

Query: 129 MED---FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183
             D     L+ ++ E     + +       ++AAT R  +L   L    RF   I +   
Sbjct: 268 GHDEREQTLNQLLTEMDGFGAYEG----VIVMAATNRPDVLDKALLRPGRFDRQIPVGPP 323

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           +    + I++  AK   L  + + A         T      LL      A       IT 
Sbjct: 324 DAAGREEILRVHAKGKQLDPSLDLAAVARRTPGFTGADLANLLNEAAILAVRRGRSHITM 383

Query: 244 EIADAALLR 252
              D A+ R
Sbjct: 384 SEIDEAIDR 392


>gi|23308782|ref|NP_599495.2| DNA polymerase III subunits gamma and tau [Corynebacterium
           glutamicum ATCC 13032]
 gi|62389140|ref|YP_224542.1| DNA polymerase III subunits gamma and tau [Corynebacterium
           glutamicum ATCC 13032]
 gi|21323006|dbj|BAB97635.1| DNA polymerase III, gamma/tau subunits [Corynebacterium glutamicum
           ATCC 13032]
 gi|41324473|emb|CAF18813.1| DNA POLYMERASE III GAMMA AND TAU SUBUNITS [Corynebacterium
           glutamicum ATCC 13032]
          Length = 775

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 79/229 (34%), Gaps = 23/229 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A  S  RP +  E  GQ +    L   +++ +         LF GP G GKT+ A+++AR
Sbjct: 2   ALYSKYRPASFGELVGQSQVTDPLSAALDSGRINHAY----LFSGPRGCGKTSSARILAR 57

Query: 77  ELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL-----YPAM 129
            L      TS P  V      LA         DV  +D      +     L     Y   
Sbjct: 58  SLNCVEGPTSTPCGVCNSCVALAP--GGPGTLDVTELDAASNNGVDDMRELRERANYAPA 115

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           E      ++ E             + V+   +    I ATT    +   ++ R       
Sbjct: 116 ESRYRVFIIDEAHMISTQGFNALLKIVEEPPAHLIFIFATTEPDKMIGTIRSR-THNYPF 174

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
                 D++ +++      G+ V D     +     G+PR +  +L ++
Sbjct: 175 RLLTPGDMRKVLKNAVDGEGVHVDDSVYPLVIRAGGGSPRDSLSILDQL 223


>gi|319954391|ref|YP_004165658.1| anti-sigma h sporulation factor, lonb [Cellulophaga algicola DSM
           14237]
 gi|319423051|gb|ADV50160.1| anti-sigma H sporulation factor, LonB [Cellulophaga algicola DSM
           14237]
          Length = 816

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 76/205 (37%), Gaps = 35/205 (17%)

Query: 32  GQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           G  +    +  ++   K R +    +L F GPPG+GKT+L + +A  LG  +   S   +
Sbjct: 360 GLEDVKRRIIEYLAVLKLRNDMKSPILCFYGPPGVGKTSLGKSIAEALGREYVRMSLGGL 419

Query: 91  AKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE--------EILY 126
               ++                       +   V  +DEI +LS   +        E+L 
Sbjct: 420 RDEAEIRGHRKTYIGAMPGRIIQSLKKAGKSNPVFILDEIDKLSNSNQGDPSSAMLEVLD 479

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           P       D  +  G        +LS+   +A    +G +   L+DR  + I ++ Y IE
Sbjct: 480 PEQNSEFHDNFLEMGY-------DLSKVMFVATANNIGNIQPALRDRMEM-IPVSGYTIE 531

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEI 211
           +   I +R   L    + +    E 
Sbjct: 532 EKVEIAKR--HLLPKQLKEHGLSEK 554


>gi|227876234|ref|ZP_03994350.1| cell division protein ftsH family protein [Mobiluncus mulieris ATCC
           35243]
 gi|227843195|gb|EEJ53388.1| cell division protein ftsH family protein [Mobiluncus mulieris ATCC
           35243]
          Length = 765

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 60/249 (24%), Positives = 89/249 (35%), Gaps = 29/249 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  EA   L+   E         K  A+    VL  GPPG GKT LA+ VA E 
Sbjct: 185 TFADVAGVNEAVEELQEIKEFLAEPDKFHKLGAKIPKGVLLYGPPGTGKTLLAKAVAGEA 244

Query: 79  GVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           GV F S SG            ++  DL     N     ++F+DEI  +       +    
Sbjct: 245 GVPFFSMSGSEFVEMFVGMGASRVRDLFEQARNAAP-AIIFVDEIDAVGRHRGTGMGGGH 303

Query: 130 EDFQLD----LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183
           ++ +      L+  +G   R+  I       IAAT R  +L   L    RF   + +   
Sbjct: 304 DEREQTLNQLLVEMDGFDERTNVIL------IAATNRPDVLDPALLRPGRFDRQVAVEAP 357

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           +I+  + I+   AK   L+   +           T      +L      A     + I  
Sbjct: 358 DIKGREAILTVHAKNKPLSKDTDLKALAKRTPGFTGADLANVLNEAALLAARHTREEINA 417

Query: 244 EIADAALLR 252
              D A+ R
Sbjct: 418 SDLDEAVDR 426


>gi|50291931|ref|XP_448398.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49527710|emb|CAG61359.1| unnamed protein product [Candida glabrata]
          Length = 359

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 65/286 (22%), Positives = 101/286 (35%), Gaps = 44/286 (15%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLK---------VFIEAAKARAEAL 54
              +LS  V  ED D+      T  +  G     S+L            I       +A 
Sbjct: 73  ERTILSSVVIAEDIDV------TFNDIGGLDNVISDLHESVIYPLTMPEIYTNNPLLKAP 126

Query: 55  DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--------AKAGDLAALLTNLEDR 106
             VL  GPPG GKT LA+ +A+E G NF S     I         K  D    L N  + 
Sbjct: 127 SGVLLYGPPGCGKTMLAKALAKESGANFISVRMSTIMDKWYGESNKIVDAMFSLANKLEP 186

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVK-----INLSRFTLIAATT 161
            ++FIDEI               E    D  V     A  +      +N  R  +I AT 
Sbjct: 187 CIIFIDEIDSFLR----------ERSSTDHEVTANLKAEFMTLWDGLLNNGRVMIIGATN 236

Query: 162 RVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRI 221
           R+  + +    R      ++   IE    I++    L G    D+A  ++++ ++ +  +
Sbjct: 237 RINDIDDAFLRRLPKRFLVSLPNIEQRTKILE---VLLGNTELDKANFDLSLIAKCSGGL 293

Query: 222 AGRLLRRVRDFAEVAHAKTITREI---ADAALLRLAIDKMGFDQLD 264
           +G  L+ +   A +  AK   +E        L    +        D
Sbjct: 294 SGSDLKELCREAALNAAKEAMKEKRNLIQKGLEATEVKLRPLTTYD 339


>gi|15835577|ref|NP_300101.1| DNA polymerase III subunits gamma and tau [Chlamydophila pneumoniae
           J138]
 gi|8978415|dbj|BAA98252.1| DNA polymerase III gamma and tau [Chlamydophila pneumoniae J138]
          Length = 442

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 59/276 (21%), Positives = 97/276 (35%), Gaps = 32/276 (11%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLK---VFIEAAKARAEALDHVLFVGPPGLGK 67
            +    A     RP+   E  GQ    + LK   VF  AA A        LF G  G GK
Sbjct: 2   TLQPYQASSRKYRPQIFREILGQSSVVAVLKNALVFNRAAHAY-------LFSGIRGTGK 54

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHR-----LSIIVE 122
           TTLA+++A+ L     S  G    +      + +     DVL ID         +  I E
Sbjct: 55  TTLARILAKALNCVHLSEDGEPCNQCFSCKEIASG-SSLDVLEIDGASHRGIEDIRQINE 113

Query: 123 EILYPAMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
            +L+  ++      ++ E             ++++          ATT +  +   +  R
Sbjct: 114 TVLFTPVKAKFKIYIIDEVHMLTKEAFNALLKTLEEPPQHVKFFFATTEIHRIPGTILSR 173

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                     E   L+ +    A+   +  + EA   IA  ++G+ R A  L   V    
Sbjct: 174 CQKMHLQRIPEKTILEKLSLM-AQDDHIEASQEALAPIARAAQGSLRDAESLYDYVISLF 232

Query: 234 EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLT 269
                K+++ +    AL   + D +    LD   L 
Sbjct: 233 P----KSLSPDTVAQALGFASQDSLR--TLDNAILQ 262


>gi|291613732|ref|YP_003523889.1| DNA polymerase III, subunits gamma and tau [Sideroxydans
           lithotrophicus ES-1]
 gi|291583844|gb|ADE11502.1| DNA polymerase III, subunits gamma and tau [Sideroxydans
           lithotrophicus ES-1]
          Length = 537

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 45/237 (18%), Positives = 81/237 (34%), Gaps = 25/237 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPR   +  GQ          +  A  +       LF G  G+GKTT+A++ A+ L    
Sbjct: 12  RPRNFAQLAGQEHVV----QALTNALTQNRLHHAYLFTGTRGVGKTTIARIFAKSLNCET 67

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAMEDFQLD 135
             T+ P     G   A       R V  I+       ++  +  ++E  LY         
Sbjct: 68  GVTATP----CGVCGACTEIDSGRFVDLIELDAASNTQVDNMRELLESALYAPTSGRFKV 123

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             ++++   S    I ATT    +   +  R  +   L      
Sbjct: 124 YIIDEVHMLSKSAFNAMLKTLEEPPSHVKFILATTDPQKIPVTVLSRC-LQFNLKQLPPA 182

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            + T +Q       +     A   +A  ++G+ R A  LL +   ++     + + R
Sbjct: 183 LILTHLQYVLGQENIPFEIGALNLVARAAQGSMRDALSLLDQAIAYSSGKVDEALVR 239


>gi|157375987|ref|YP_001474587.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3]
 gi|157318361|gb|ABV37459.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3]
          Length = 955

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 49/240 (20%), Positives = 76/240 (31%), Gaps = 53/240 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP T E+  GQ      L      A ++       LF G  G+GKT+LA++ A+ L    
Sbjct: 11  RPATFEQMVGQSHVLHAL----TNALSQQRLHHAYLFSGTRGVGKTSLARLFAKGLNCEK 66

Query: 83  ------------------------RSTSGPVIAKAGDLAALLTNLEDRD------VLFID 112
                                            K  D   LL N++ R       V  ID
Sbjct: 67  GVTASPCGQCSSCIEISEGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRYKVYLID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS      L   +E+                         + ATT    L   +  
Sbjct: 127 EVHMLSRSSFNALLKTLEE------------------PPEHVKFLLATTDPQRLPVTVLS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R  +   L    +E+++  +        L+   +A   +A  + G+ R A  L  +   F
Sbjct: 169 RC-LQFNLKSLTLEEIEQQLTHVLSQEQLSFEPQALKLLAKSANGSMRDALSLTDQAIAF 227


>gi|331703056|ref|YP_004399743.1| ATP dependent zinc metallopeptidase FtsH [Mycoplasma mycoides
           subsp. capri LC str. 95010]
 gi|328801611|emb|CBW53764.1| ATP dependent zinc metallopeptidase FtsH [Mycoplasma mycoides
           subsp. capri LC str. 95010]
          Length = 648

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 58/248 (23%), Positives = 97/248 (39%), Gaps = 29/248 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAK-------ARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G  E  S L   ++  K       A A A   VL  GPPG GKT LA+ VA E 
Sbjct: 168 KFSDVAGIEEEKSELVELVDYLKQPAKYASAGARAPKGVLMEGPPGTGKTLLAKAVAGEA 227

Query: 79  GVNFRSTSGPVIA------KAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAME 130
            V+F S +G           A  +  +    +     ++FIDEI  +       +     
Sbjct: 228 NVSFFSIAGSEFEEMFVGVGASRVREMFNEAKKAAPAIIFIDEIDAVGRKRNSAIGTGTN 287

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
           +  L+ ++ E     +     S   ++AAT RV +L   L    RF   I+++  +I++ 
Sbjct: 288 EQTLNQLLVELDGFETN----SGIIVMAATNRVDVLDPALLRPGRFDRVIQVSLPDIKER 343

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV----AHAKTITRE 244
           + I++  A+   +      + +    +  TP  +G  L  V + A +         I   
Sbjct: 344 EQILKLHARNKKID----PSIDWHRVAERTPGFSGAQLENVLNEAAILMVREGKTVIGIN 399

Query: 245 IADAALLR 252
             D A+ R
Sbjct: 400 EIDEAIDR 407


>gi|88602329|ref|YP_502507.1| proteasome-activating nucleotidase [Methanospirillum hungatei JF-1]
 gi|121731703|sp|Q2FQ56|PAN_METHJ RecName: Full=Proteasome-activating nucleotidase; Short=PAN;
           AltName: Full=Proteasomal ATPase; AltName:
           Full=Proteasome regulatory ATPase; AltName:
           Full=Proteasome regulatory particle
 gi|88187791|gb|ABD40788.1| Proteasome-activating nucleotidase [Methanospirillum hungatei JF-1]
          Length = 412

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 51/256 (19%), Positives = 89/256 (34%), Gaps = 20/256 (7%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
           T E+  G  +    ++  +E    R +            VL  GPPG GKT LA+ VA E
Sbjct: 151 TYEDIGGLEKQIMEIREAVELPMTRPDLFEKIGINPPKGVLLYGPPGTGKTLLAKAVAHE 210

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM 129
               F  T G  +        A  +  L    +++   ++FIDEI  +     E +    
Sbjct: 211 THAIFLHTVGSELVQKYIGEGARLVRELFDLAKEKAPSIVFIDEIDAIGASRTEAM--TS 268

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            D ++   + +  +A           +I AT R+ +L   L    RF   I +   + E 
Sbjct: 269 GDREVQRTLMQLLAAMDGFEPRGDVKIIGATNRIDILDAALLRPGRFDRIIEIPLPDTEG 328

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
             +I++   +   L+   +      +           +      FA       + +E   
Sbjct: 329 RYSILKVHTRCMNLSEDVDLMEVARLTEGRNGAELNAICMEAGMFAIRKEHPQVDQEDFL 388

Query: 248 AALLRLAIDKMGFDQL 263
            AL +   D     +L
Sbjct: 389 TALNKFRCDFERDHRL 404


>gi|83319940|ref|YP_424015.1| ATP-dependent metalloprotease FtsH [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
 gi|83283826|gb|ABC01758.1| ATP-dependent metalloprotease FtsH [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
          Length = 650

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 58/248 (23%), Positives = 97/248 (39%), Gaps = 29/248 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAK-------ARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G  E  S L   ++  K       A A A   VL  GPPG GKT LA+ VA E 
Sbjct: 171 KFSDVAGIEEEKSELVELVDYLKQPAKYASAGARAPKGVLMEGPPGTGKTLLAKAVAGEA 230

Query: 79  GVNFRSTSGPVIA------KAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAME 130
            V+F S +G           A  +  +    +     ++FIDEI  +       +     
Sbjct: 231 NVSFFSIAGSEFEEMFVGVGASRVREMFNEAKKSAPAIIFIDEIDAVGRKRNSAIGTGTN 290

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
           +  L+ ++ E     +     S   ++AAT RV +L   L    RF   I+++  +I++ 
Sbjct: 291 EQTLNQLLVELDGFETN----SGIIVMAATNRVDVLDPALLRPGRFDRVIQVSLPDIKER 346

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV----AHAKTITRE 244
           + I++  A+   +      + +    +  TP  +G  L  V + A +         I   
Sbjct: 347 EQILKLHARNKKID----PSIDWHRIAERTPGFSGAQLENVLNEAAILMVREGKTVIGVN 402

Query: 245 IADAALLR 252
             D A+ R
Sbjct: 403 EIDEAIDR 410


>gi|39938720|ref|NP_950486.1| hypothetical protein PAM_234 [Onion yellows phytoplasma OY-M]
 gi|39721829|dbj|BAD04319.1| hypothetical protein [Onion yellows phytoplasma OY-M]
          Length = 224

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 58/226 (25%), Positives = 98/226 (43%), Gaps = 23/226 (10%)

Query: 32  GQVEACSNLKVFIEAAK-------ARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRS 84
           G  E    L+ FI+  K       A A+    +L  GPPG GKT L + +A E   +F +
Sbjct: 3   GMEEEKQLLQRFIDFLKEPKKYHEAGAKIPKGILLYGPPGTGKTLLVKALAGESDSSFYA 62

Query: 85  TSGPVIAKA--GDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
            SG    +   GD A  + +L ++       ++FIDEI    I   +      E     L
Sbjct: 63  FSGTDFLQRIHGDGAKKVRDLFEKTKTHKTSIIFIDEIDSFGIARNDFSQKEKEITTELL 122

Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQR 194
              +G  ++  + N     +IAAT RV  L + L    RF   + +   +++  K I++ 
Sbjct: 123 NQMDGIKSKDNENN---VIVIAATNRVESLDSALLRPGRFDYVVNVLLPDLKARKAILKL 179

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            AK   +A  D    ++A   + T  ++G  L+ + + A +  A+ 
Sbjct: 180 CAKGKQIADEDINLEQLA---QETQGLSGAQLKAILNEASMLQAEK 222


>gi|327310634|ref|YP_004337531.1| AAA family ATPase [Thermoproteus uzoniensis 768-20]
 gi|326947113|gb|AEA12219.1| AAA family ATPase, possible cell division control protein cdc48
           [Thermoproteus uzoniensis 768-20]
          Length = 755

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 60/250 (24%), Positives = 96/250 (38%), Gaps = 24/250 (9%)

Query: 28  EEFTGQVEACSNLKVFIE-AAKARA-------EALDHVLFVGPPGLGKTTLAQVVARELG 79
            +  G  +    L+  +E   K RA       E    +L  GPPG+GKT  A+ VA E G
Sbjct: 468 SDIGGYEDIKQELREIVEWPMKYRAYFDELGVEPPRGILLYGPPGVGKTMFAKAVATESG 527

Query: 80  VNFRSTSGP-VIAK-AGDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAMED 131
            NF +  GP V++K  G+    +  +  R       V+F DEI  ++      L      
Sbjct: 528 ANFIAVRGPEVLSKWVGESEKAVREIFKRARMAAPCVVFFDEIDSIAPARGSRLGD---S 584

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
              D +V +  +       L    ++AAT R  +L   L    RF   I +   + +   
Sbjct: 585 GVTDRIVNQLLAEMDGIGTLRNVVVMAATNRPDILDPALLRPGRFDRIIYVPPPDEKARL 644

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            I++       + + DEAA +     +        L +R   +   A    + RE A  A
Sbjct: 645 EILK--VHTRRVKLCDEAAAKDGRCKKEDVVNLAELAKRTEGY-TGADIAALVREAAMLA 701

Query: 250 LLRLAIDKMG 259
           L     ++ G
Sbjct: 702 LRETIRERAG 711



 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 46/202 (22%), Positives = 76/202 (37%), Gaps = 24/202 (11%)

Query: 24  PR-TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVV 74
           PR T E+     EA   ++  +E      E   H        +L  GPPG GKT LA+ V
Sbjct: 175 PRVTWEDIGDLEEAKQKIRELVELPLRHPELFKHLGIEPPKGILLYGPPGTGKTLLAKAV 234

Query: 75  ARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILY 126
           A E    F + +GP I           L  +    +     ++FIDEI  ++   EE+  
Sbjct: 235 ANEANAYFIAINGPEIMSKYYGESEAKLREIFDEAKKNAPAIIFIDEIDAIAPKREEVTG 294

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
              +     L+               +  +I AT R   +   L+   RF   I++   +
Sbjct: 295 EVEKRVVAQLLT-----LMDGLQERGQIVVIGATNRPDAVDPALRRPGRFDREIQIPMPD 349

Query: 185 IEDLKTIVQRGAKLTGLAVTDE 206
               + I+Q   +   L  +++
Sbjct: 350 KRARREILQVHTRNMPLCTSED 371


>gi|227826620|ref|YP_002828399.1| microtubule-severing ATPase [Sulfolobus islandicus M.14.25]
 gi|229583784|ref|YP_002842285.1| Microtubule-severing ATPase [Sulfolobus islandicus M.16.27]
 gi|238618707|ref|YP_002913532.1| Microtubule-severing ATPase [Sulfolobus islandicus M.16.4]
 gi|227458415|gb|ACP37101.1| Microtubule-severing ATPase [Sulfolobus islandicus M.14.25]
 gi|228018833|gb|ACP54240.1| Microtubule-severing ATPase [Sulfolobus islandicus M.16.27]
 gi|238379776|gb|ACR40864.1| Microtubule-severing ATPase [Sulfolobus islandicus M.16.4]
          Length = 606

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 56/251 (22%), Positives = 87/251 (34%), Gaps = 26/251 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIE--------AAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           T  +  G  +A   +K +IE        A K   +    +L  GPPG GKT + + +A E
Sbjct: 59  TWNDIGGYEDAKKEIKEYIELPLKNRDVAMKYGLKPPKGMLLFGPPGCGKTMMMRALANE 118

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
             +NF   +   I           L  L  N       +LF DEI  + +  E     ++
Sbjct: 119 SKLNFLYVNISDIMSKWYGESEARLRELFNNARKNSPCILFFDEIDTIGVKRESHTGDSV 178

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
               L LM+ E     S         ++ +T    +L   L    RF   I +     E 
Sbjct: 179 TPRLLSLMLSEIDGLHSEDG----VIVVGSTNVPQMLDKALLRAGRFDKLIYIGPPNKEA 234

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            K I+Q   K   LA       +    +  T R +G  L  +   A    A     + AD
Sbjct: 235 RKQILQIHCKGKPLADD----VDFDKLAEITERYSGADLANLCQEAARKVASEAIEKGAD 290

Query: 248 AALLRLAIDKM 258
             +      ++
Sbjct: 291 RKITMADFIEL 301



 Score = 52.0 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/234 (18%), Positives = 82/234 (35%), Gaps = 28/234 (11%)

Query: 35  EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI---- 90
           +    LKV           +  +L  GPPG+GKT +A+ +A+ L V   + SG  I    
Sbjct: 368 KLLEQLKV---------PPIRGILLYGPPGVGKTMMAKALAKTLNVKLIALSGAEIMYKG 418

Query: 91  --AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARS 146
                  +  +     +    ++ +DE+  ++       Y       ++ ++ E    RS
Sbjct: 419 YEGAIAAIKEVFNRARENKPAIVLLDELDAIASKRNYKSY-TDSSKIVNQLLTEMDGIRS 477

Query: 147 VKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVT 204
               L    +I  T R+  +   L    RF   I +     E+   I+ +          
Sbjct: 478 ----LKEVVVIGTTNRLKAIDPALLRPGRFDKIIHMPLPNREERLDILMKYIGKEECEKV 533

Query: 205 DEA--ACEIAMRSRGTPRIAGR--LLRRVRDFAEVAHAKTITREIADAALLRLA 254
           D    A +    S        R   ++ ++        +T+T+E    AL ++ 
Sbjct: 534 DCGILAEQTEGYSGADLSALAREAKMKVLKSILRGESNRTLTKEDLIDALNKIH 587


>gi|61806033|ref|YP_214393.1| clamp loader subunit [Prochlorococcus phage P-SSM2]
 gi|61374542|gb|AAX44539.1| clamp loader subunit [Prochlorococcus phage P-SSM2]
 gi|265525243|gb|ACY76040.1| sliding clamp loader [Prochlorococcus phage P-SSM2]
          Length = 313

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 67/172 (38%), Gaps = 33/172 (19%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
            +   RP+T+EE         + K   +   ++ E + ++L  GPPG+GKTT+A+ +  +
Sbjct: 6   WVEKYRPQTIEECI----LPESTKKMFQDFLSKGE-IPNMLLSGPPGIGKTTVAKCLCNQ 60

Query: 78  LGVNFRSTSGP--------VIAKAGDLAAL--LTNLEDRDVLFIDEIHRLSIIVEEILYP 127
           LG ++   +G         V   A + A+   LT+     V+ IDE    +  V+ +L  
Sbjct: 61  LGADYYVINGSDEGRFLDTVRNNAKNFASTVSLTSESKHKVIIIDEADNTTPDVQLLLRA 120

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           ++E+F                        I        +  PL  R  +   
Sbjct: 121 SIEEFS------------------KNCRFIFTCNYKNKIIEPLHSRCAVVEF 154


>gi|269976860|ref|ZP_06183834.1| ATP-dependent metallopeptidase HflB [Mobiluncus mulieris 28-1]
 gi|306819509|ref|ZP_07453216.1| ATP-dependent metalloprotease FtsH [Mobiluncus mulieris ATCC 35239]
 gi|269934691|gb|EEZ91251.1| ATP-dependent metallopeptidase HflB [Mobiluncus mulieris 28-1]
 gi|304647801|gb|EFM45119.1| ATP-dependent metalloprotease FtsH [Mobiluncus mulieris ATCC 35239]
          Length = 765

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 60/249 (24%), Positives = 89/249 (35%), Gaps = 29/249 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  EA   L+   E         K  A+    VL  GPPG GKT LA+ VA E 
Sbjct: 185 TFADVAGVNEAVEELQEIKEFLAEPDKFHKLGAKIPKGVLLYGPPGTGKTLLAKAVAGEA 244

Query: 79  GVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           GV F S SG            ++  DL     N     ++F+DEI  +       +    
Sbjct: 245 GVPFFSMSGSEFVEMFVGMGASRVRDLFEQARNAAP-AIIFVDEIDAVGRHRGTGMGGGH 303

Query: 130 EDFQLD----LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183
           ++ +      L+  +G   R+  I       IAAT R  +L   L    RF   + +   
Sbjct: 304 DEREQTLNQLLVEMDGFDERTNVIL------IAATNRPDVLDPALLRPGRFDRQVAVEAP 357

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           +I+  + I+   AK   L+   +           T      +L      A     + I  
Sbjct: 358 DIKGREAILTVHAKNKPLSKDTDLKALAKRTPGFTGADLANVLNEAALLAARHTREEINA 417

Query: 244 EIADAALLR 252
              D A+ R
Sbjct: 418 SDLDEAVDR 426


>gi|195585855|ref|XP_002082694.1| GD25099 [Drosophila simulans]
 gi|194194703|gb|EDX08279.1| GD25099 [Drosophila simulans]
          Length = 603

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 56/245 (22%), Positives = 90/245 (36%), Gaps = 24/245 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T E+  G  EA   LK  +E  K+         +    VL VGPPG GKT LA+ VA E 
Sbjct: 213 TFEDVKGCDEAKQELKEVVEFLKSPEKFSNLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 272

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F   +GP          A  +  L    + R   V+FIDEI  +       +     
Sbjct: 273 KVPFFHAAGPEFDEVLVGQGARRVRDLFKAAKARAPCVIFIDEIDSVGAKRTNSVLHPYA 332

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
           +  ++ ++ E               ++ AT R   L   L    RF + + ++  +    
Sbjct: 333 NQTINQLLSEMDGFHQNAG----VIVLGATNRRDDLDQALLRPGRFDVEVMVSTPDFTGR 388

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAM-RSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           K I+     LT +   +     +A   S  T      ++ +    A +  A+T +     
Sbjct: 389 KEIL--SLYLTKILHDEIDLDMLARGTSGFTGADLENMINQAALRAAIDGAETESHRCTS 446

Query: 248 AALLR 252
             + R
Sbjct: 447 DIMPR 451


>gi|299750239|ref|XP_001836624.2| ribosome biogenesis ATPase RIX7 [Coprinopsis cinerea okayama7#130]
 gi|298408810|gb|EAU85195.2| ribosome biogenesis ATPase RIX7 [Coprinopsis cinerea okayama7#130]
          Length = 799

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 54/206 (26%), Positives = 79/206 (38%), Gaps = 15/206 (7%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--V 108
           VL  GPPG GKT LA  +A ELGV F + S P I           L       +     +
Sbjct: 195 VLLHGPPGCGKTLLANAIAGELGVPFINISAPSIVSGMSGESEKTLRDTFEEAKRVAPCL 254

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           LFIDEI  ++    E     ME   +   +         K +     +I AT R   L  
Sbjct: 255 LFIDEIDAITPKR-ESAQREMERRIVAQFLTCMDDMSWDKTDNKPVIVIGATNRPDSLDA 313

Query: 169 PLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
            L+   RF   I +   + E    I+    K+    +  E   +    ++ TP   G  L
Sbjct: 314 ALRRAGRFDHEISMGVPDDEARTKIL----KVLCSKLRLEGDFDFIALAKATPGYVGADL 369

Query: 227 RRVRDFAEVAHAKTITREIADAALLR 252
             +   A +   K I ++++D  LL 
Sbjct: 370 AALTGAAGIIAVKRIFKQLSDGTLLL 395



 Score = 52.0 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 57/213 (26%), Positives = 83/213 (38%), Gaps = 22/213 (10%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD-- 107
           EA   VL  GPPG GKT LA+ VA E   NF S  GP +     G+    +  +  R   
Sbjct: 522 EAPCGVLMWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESERAVRQVFSRARA 581

Query: 108 ----VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG-EGPSARSVKINLSRFTLIAATTR 162
               V+F DE+  L    ++ L  +       L+   +G  AR          +IAAT R
Sbjct: 582 SSPCVIFFDELDALVPRRDDTLSESSARVVNTLLTELDGLDAR------KGVYVIAATNR 635

Query: 163 VGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPR 220
             ++   +    R    + ++     +   IV+   +   L   D  A +IA       R
Sbjct: 636 PDMIDPAMVRPGRLDKLLYVDLPTPTERAEIVRTMVRKLPLGRDDVMAQDIA----NDVR 691

Query: 221 IAGRLLRRVR-DFAEVAHAKTITREIADAALLR 252
            A   L + R D    A   ++ RE    AL R
Sbjct: 692 AAIEQLVKDRCDGYSGADLASLVREAGVIALRR 724


>gi|293401426|ref|ZP_06645569.1| cell division protein FtsH [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305064|gb|EFE46310.1| cell division protein FtsH [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 617

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 92/245 (37%), Gaps = 21/245 (8%)

Query: 25  RTLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +T  +  GQ EA  +L+  +       + +K  A+     L VGPPG GKT LA+ VA E
Sbjct: 164 KTFRDVAGQEEAKESLQEMVDFLKDPEKYSKIGAQMPKGALLVGPPGTGKTLLAKAVAGE 223

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
             V F S SG           A  +  L     ++   ++FIDEI  +    +       
Sbjct: 224 ANVPFFSISGSEFVEMFVGRGAARVRDLFKQAREKAPCIVFIDEIDTIGKKRDGAGVGGN 283

Query: 130 EDFQLDLMVGEGPSARSVKINLSR-FTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           ++ +  L       A     + S    ++AAT R   L   L    RF   I +   ++ 
Sbjct: 284 DEREQTL---NQLLAEMDGFDGSTGVIILAATNRPESLDQALLRPGRFDRRIPVELPDLH 340

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I+Q  AK   ++   +        +  +      ++      A   H   + ++  
Sbjct: 341 GREAILQVHAKDVKISKQVDFRAIARATAGASGAELANIINEAALIAVKDHRNQVLQKDL 400

Query: 247 DAALL 251
           + A+ 
Sbjct: 401 EEAVE 405


>gi|212717036|ref|ZP_03325164.1| hypothetical protein BIFCAT_01983 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660024|gb|EEB20599.1| hypothetical protein BIFCAT_01983 [Bifidobacterium catenulatum DSM
           16992]
          Length = 865

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 55/283 (19%), Positives = 93/283 (32%), Gaps = 30/283 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     RP T +   GQ +    L   ++  K     L H  LF GP G GKT+ A+++A
Sbjct: 4   ALYRRYRPDTFDGVIGQDQVTVPLMRALDENK-----LTHAYLFSGPRGCGKTSSARILA 58

Query: 76  RELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------P 127
           R +      TS P        DLA         DV+ ID      +     L       P
Sbjct: 59  RCVNCAKGPTSHPCGECESCKDLA--TGGPGSIDVVEIDAASHNGVDDARELRERAGFAP 116

Query: 128 AMEDFQLDLMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           A + +++ ++         G     + V+        I ATT    +   ++ R      
Sbjct: 117 ARDRYKIFILDEAHMVTPQGFNALLKIVEEPPEHVMFIFATTEPDKVIGTIRSR-THHYP 175

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR----VRDFAEV 235
                 E +   +++  +   +               G+ R    +L +      D +  
Sbjct: 176 FRLVPKEVMGPYLEQICEDEHIEAEPGVLRLAMRAGGGSVRDTLSVLDQLMVGAVDGSIA 235

Query: 236 AHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
             +          AL+  AID +  D+       +I +   GG
Sbjct: 236 YDSAVALLGFTPDALISEAIDAVA-DKNGEALYGVIQKVVVGG 277


>gi|242008814|ref|XP_002425193.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212508909|gb|EEB12455.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 804

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 48/256 (18%), Positives = 90/256 (35%), Gaps = 27/256 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVARE 77
           T ++  G       L+  ++      +            VLF GPPG GKT LA+ +A E
Sbjct: 473 TWDDIGGLQNVKRELQELVQYPVEHPDKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANE 532

Query: 78  LGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAM 129
              NF S  GP +     G+  A + ++ D+       VLF DE+  ++      L  A 
Sbjct: 533 CQANFISVKGPELLTMWFGESEANVRDVFDKARSAAPCVLFFDELDSIAKSRGGSLGDA- 591

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                D ++ +  +            +I AT R  ++   +    R    I +   + + 
Sbjct: 592 -GGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKS 650

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF-------AEVAHAKT 240
            + I +   + + +A   +      +    +      + +R           AE++  + 
Sbjct: 651 REAIFKANLRKSPIAKDVDLGYIAKVTHGFSGADITEVCQRACKLAIRQSIEAEISRERE 710

Query: 241 ITREIADAALLRLAID 256
            T     AA+     D
Sbjct: 711 RTMNPNSAAMETDEDD 726



 Score = 52.8 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 51/263 (19%), Positives = 90/263 (34%), Gaps = 38/263 (14%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARA--------EALDHVLFVGPPGLGKTTLAQVVARELG 79
           ++  G  +  + +K  +E              +    +L  GPPG GKT +A+ VA E G
Sbjct: 202 DDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG 261

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMED 131
             F   +GP I          +L       +     ++FIDE+  ++   E+        
Sbjct: 262 AFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHGEVERR 321

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
               L+       +S     S   ++AAT R   +   L+   RF   I +   +     
Sbjct: 322 IVSQLLTLMDGMKKS-----SHVIVMAATNRPNSIDVALRRFGRFDREIDIGIPDATGRL 376

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            I++   K   LA  D    +IA  + G        L               +       
Sbjct: 377 EILRIHTKNMKLA-DDVDLEQIAAETHGHVGADLASL--------------CSESALQQI 421

Query: 250 LLRLAIDKMGFDQLDLRYLTMIA 272
             ++ +  +  DQ+D + L  +A
Sbjct: 422 REKMDLIDLEDDQIDAQVLDSLA 444


>gi|117920889|ref|YP_870081.1| DNA polymerase III subunits gamma and tau [Shewanella sp. ANA-3]
 gi|117613221|gb|ABK48675.1| DNA polymerase III, subunits gamma and tau [Shewanella sp. ANA-3]
          Length = 1040

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 52/241 (21%), Positives = 76/241 (31%), Gaps = 55/241 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP T E+  GQ      L   +       + L H  LF G  G+GKT+LA++ A+ L   
Sbjct: 11  RPATFEQMVGQSHVLHALTNALT-----QQRLHHAYLFTGTRGVGKTSLARLFAKGLNCE 65

Query: 82  F------------------------RSTSGPVIAKAGDLAALLTNLEDRD------VLFI 111
                                             K  D   LL N++ R       V  I
Sbjct: 66  KGVTASPCGVCGSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPTRGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSRSSFNALLKTLEE------------------PPKHVKFLLATTDPQKLPVTVL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L     +++ T +Q       L    EA   +A  + G+ R A  L  +   
Sbjct: 168 SRC-LQFNLKSLTQQEIGTQLQHILTQEQLPFEHEALTLLAKAANGSMRDALSLTDQAIA 226

Query: 232 F 232
           F
Sbjct: 227 F 227


>gi|92113582|ref|YP_573510.1| DNA polymerase III subunits gamma and tau [Chromohalobacter
           salexigens DSM 3043]
 gi|91796672|gb|ABE58811.1| DNA polymerase III, gamma subunit [Chromohalobacter salexigens DSM
           3043]
          Length = 723

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 78/226 (34%), Gaps = 21/226 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPRT  E  GQ          +  A  +       LF G  G+GKTTLA+++A+   +N 
Sbjct: 11  RPRTFHELVGQEHV----SRALVNALDQGRLHHAYLFTGTRGVGKTTLARILAK--CLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
           R     V     +    +      D++ +D   R  +     L       P    +++ L
Sbjct: 65  RQGVTSVPCGECETCREIDEGRFVDLIEVDAASRTKVEDTRELLDNVQYAPTQGRYKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++        + ATT    L   +  R  +   L     E +
Sbjct: 125 IDEVHMLSTHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRC-LQFTLKNMPPERV 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
              +    +   +A  ++A   +   + G+ R A  L  +   F +
Sbjct: 184 VGHLSHILQAESVAYDEQALWLLGKAADGSMRDAMSLTDQAIAFGQ 229


>gi|119589558|gb|EAW69152.1| protease, serine, 15, isoform CRA_b [Homo sapiens]
          Length = 950

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 73/192 (38%), Gaps = 33/192 (17%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI  ++ R      +L F GPPG+GKT++A+ +AR L   +   S
Sbjct: 480 EDHYGMEDVKKRILEFIAVSQLRGSTQGKILCFYGPPGVGKTSIARSIARALNREYFRFS 539

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ ++    +        
Sbjct: 540 VGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLILIDEVDKIGRGYQGDPSSALL 599

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V ++LS+   I        +  PL+DR  + I ++ 
Sbjct: 600 ELLDPEQNANFLD-------HYLDVPVDLSKVLFICTANVTDTIPEPLRDRMEM-INVSG 651

Query: 183 YEIEDLKTIVQR 194
           Y  ++   I +R
Sbjct: 652 YVAQEKLAIAER 663


>gi|268608356|ref|ZP_06142083.1| hypothetical protein RflaF_02525 [Ruminococcus flavefaciens FD-1]
          Length = 606

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 59/230 (25%), Positives = 87/230 (37%), Gaps = 27/230 (11%)

Query: 25  RTLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +T E+  GQ EA   LK  +       + A+  A      L VGPPG GKT LAQ VA E
Sbjct: 160 KTFEDVAGQDEAKEALKEIVDFLHDPGKYAEIGANLPKGALLVGPPGTGKTLLAQAVAGE 219

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
             V F S SG           A  +  L +   ++   ++FIDEI  +    +  +    
Sbjct: 220 AEVPFFSISGSEFVEMFVGMGAAKVRDLFSQAVEKAPCIVFIDEIDTIGKKRDGQIGGND 279

Query: 130 E-DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           E +  L+ ++ E               ++AAT R   L   L    RF   I +   ++ 
Sbjct: 280 EREQTLNQLLTEMDGFD----GKKGVVILAATNRPESLDPALLRPGRFDRRIPVELPDLA 335

Query: 187 DLKTIVQ-RGAKLTGLAVTDEAACEIAMRSRGTPRIAG----RLLRRVRD 231
             + I+     K+      D  A   A        +A       LR VR+
Sbjct: 336 GREAILNVHAQKIKLTDGIDFNAIARATAGASGAELANIINEAALRAVRN 385


>gi|58270226|ref|XP_572269.1| activator 1 41 kda subunit [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|134117646|ref|XP_772457.1| hypothetical protein CNBL0720 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50255071|gb|EAL17810.1| hypothetical protein CNBL0720 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57228527|gb|AAW44962.1| activator 1 41 kda subunit, putative [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 363

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 80/222 (36%), Gaps = 16/222 (7%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+T+++ + Q    + L+  +      +  L H+LF GPPG GKT+    +AR
Sbjct: 19  PWVEKYRPKTIDDVSSQDNTVAVLRKAL-----ASTNLPHMLFYGPPGTGKTSTILALAR 73

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV----EEILYPAMEDF 132
           +L       +  +   A D   + + + ++   F  E  R +  V    +E   P  +  
Sbjct: 74  QLFGPDLFRARVLELNASDERGI-SVVREKIKSFARETPRHAPAVSSDGKEYPCPPFKLI 132

Query: 133 QLDLMVGEGPSA----RSVKINLSRFTLIAA-TTRVGLLTNPLQDRFGIPIRLNFYEIED 187
            LD        A    R +    S+ T        V  +  PL  R     R    E   
Sbjct: 133 ILDEADSMTQDAQSALRRIMETYSKITRFCLVCNYVTRIIEPLASRCS-KFRFKPLEQGS 191

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
            +  ++  A+  G+         I   + G  R A   L+  
Sbjct: 192 TRARMEMIAENEGVQTDPGVISLILELAGGDLRKAITYLQTA 233


>gi|224373508|ref|YP_002607880.1| DNA polymerase III, subunits gamma and tau [Nautilia profundicola
           AmH]
 gi|223589298|gb|ACM93034.1| DNA polymerase III, subunits gamma and tau [Nautilia profundicola
           AmH]
          Length = 493

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 81/246 (32%), Gaps = 57/246 (23%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  EE  GQ      L      +  +       LF G  G GKTT A++ A+ L  + 
Sbjct: 8   RPKRFEEIIGQDAIVKTLV----NSLDKNRIAHAYLFSGLRGAGKTTTARIFAKALQCDH 63

Query: 83  RSTSGP------------------------VIAKAGDLAALLTNLEDRD------VLFID 112
             TS P                           K  D+  L+ + + +       +  ID
Sbjct: 64  GPTSNPCEECENCIMANESRHIDIIEMDAASNRKIEDIRELIEHTKYKPSVGKYKIFIID 123

Query: 113 EIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           E+H L+      L   +E+    +  ++      +     LSR        R   + N +
Sbjct: 124 EVHMLTNEAFNALLKTLEEPPEYVKFIMATTDPLKLPATILSRVQHF----RFNKIKNGI 179

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
            + + I I                   +  +   +EA   I   ++G+ R +  LL +  
Sbjct: 180 IENYLIKI-----------------LAIENVEFDEEALRLIIKAAKGSVRDSLTLLDQAI 222

Query: 231 DFAEVA 236
            F++  
Sbjct: 223 AFSKGK 228


>gi|168182032|ref|ZP_02616696.1| ATP-dependent metallopeptidase HflB [Clostridium botulinum Bf]
 gi|182674745|gb|EDT86706.1| ATP-dependent metallopeptidase HflB [Clostridium botulinum Bf]
          Length = 658

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 65/262 (24%), Positives = 103/262 (39%), Gaps = 33/262 (12%)

Query: 26  TLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T E+  GQ EA  +L   +          +  A+     L VGPPG GKT LA+ VA E 
Sbjct: 163 TFEDVAGQDEAKESLVEIVDFLHKPERYTEIGAKLPKGALLVGPPGTGKTLLAKAVAGEA 222

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  L    +++   ++FIDEI  +    +  +    E
Sbjct: 223 KVPFFSLSGSSFVEMFVGMGAARVRDLFEQAQEKAPCIIFIDEIDAIGKSRDNAMSSNDE 282

Query: 131 -DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ-----DRFGIPIRLNFYE 184
            +  L+ ++ E     S K       ++AAT R  +L   L      DR  I  R +   
Sbjct: 283 REQTLNQLLAEMDGFDSSKG----VVILAATNRPEILDKALLRPGRFDRRVIVDRPDLKG 338

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            ED+  +  +G K++        A       + TP   G  L  + + A +   K   +E
Sbjct: 339 REDILKVHSKGVKISKEVDMSSIA-------KSTPGAVGSDLANIINEAALRAVKNGRQE 391

Query: 245 IADAALLR-LAIDKMGFDQLDL 265
           +    L   + +   G ++ D 
Sbjct: 392 VIQEDLEEAVEVIIAGKEKKDR 413


>gi|145498359|ref|XP_001435167.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124402297|emb|CAK67770.1| unnamed protein product [Paramecium tetraurelia]
          Length = 340

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 6/100 (6%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVG 61
           M  E +     ++    I   RP TL+E     E  + +K F E        L ++L  G
Sbjct: 1   MIIEEVQGNKKNKNIPWIEKYRPSTLDEVISHEEIVATIKKFNE-----KNRLPNLLLYG 55

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLT 101
           PPG GKT+    +A+++    +     +   A D   + T
Sbjct: 56  PPGTGKTSTIIALAKQI-YQNKYNQMVLELNASDERGINT 94


>gi|326385522|ref|ZP_08207161.1| DNA polymerase III subunits gamma and tau [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326210061|gb|EGD60839.1| DNA polymerase III subunits gamma and tau [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 622

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 57/304 (18%), Positives = 96/304 (31%), Gaps = 33/304 (10%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           S             R +T  E  GQ      L   I     R       L  G  G+GKT
Sbjct: 67  SGAPQPYRVLARKYRSQTFAELIGQEAMVQTLANAIR----RGRLAHAFLMTGIRGVGKT 122

Query: 69  TLAQVVARELGV-NFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-------EIHRLSII 120
           + A+++A+ L         GP I   G         E R +  I+        +  +  I
Sbjct: 123 STARLIAKALNCIGPDGQGGPTIDPCGVCEPCRAIAEGRHIDVIEMDAASHTGVDDVREI 182

Query: 121 VEEILYPAMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           +E + Y A+       ++ E             ++++   +    + ATT V  L   + 
Sbjct: 183 IEAVRYAAVSARYKIYIIDEVHMLSRNAFNALLKTLEEPPAHVKFLFATTEVDKLPVTVL 242

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R      L   E   L           G+   DEA   IA  + G+ R    +L +   
Sbjct: 243 SRCQ-RFDLKRIETPVLAAHFASICDKEGVKADDEALALIAAAAEGSVRDGLSILDQAIS 301

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYL---------TMIARNFGGGPVGI 282
            A++A        +   A     +  +    +  R L          ++    G   +GI
Sbjct: 302 HADLAGGGEAGTHVT--AAQVREMLGLADKSMQRRLLGAVLGGDGRKLLDEVAGQYALGI 359

Query: 283 ETIS 286
           E ++
Sbjct: 360 EPLA 363


>gi|322807659|emb|CBZ05234.1| cell division protein FtsH [Clostridium botulinum H04402 065]
          Length = 658

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 65/262 (24%), Positives = 103/262 (39%), Gaps = 33/262 (12%)

Query: 26  TLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T E+  GQ EA  +L   +          +  A+     L VGPPG GKT LA+ VA E 
Sbjct: 163 TFEDVAGQDEAKESLVEIVDFLHKPERYTEIGAKLPKGALLVGPPGTGKTLLAKAVAGEA 222

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  L    +++   ++FIDEI  +    +  +    E
Sbjct: 223 KVPFFSLSGSSFVEMFVGMGAARVRDLFEQAQEKAPCIIFIDEIDAIGKSRDNAMSSNDE 282

Query: 131 -DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ-----DRFGIPIRLNFYE 184
            +  L+ ++ E     S K       ++AAT R  +L   L      DR  I  R +   
Sbjct: 283 REQTLNQLLAEMDGFDSSKG----VVILAATNRPEILDKALLRPGRFDRRVIVDRPDLKG 338

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            ED+  +  +G K++        A       + TP   G  L  + + A +   K   +E
Sbjct: 339 REDILKVHSKGVKISKEVDMSSIA-------KSTPGAVGSDLANIINEAALRAVKNGRQE 391

Query: 245 IADAALLR-LAIDKMGFDQLDL 265
           +    L   + +   G ++ D 
Sbjct: 392 VIQEDLEEAVEVIIAGKEKKDR 413


>gi|168178995|ref|ZP_02613659.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum NCTC
           2916]
 gi|226950776|ref|YP_002805867.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A2 str.
           Kyoto]
 gi|182670026|gb|EDT82002.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum NCTC
           2916]
 gi|226844301|gb|ACO86967.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A2 str.
           Kyoto]
          Length = 658

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 65/262 (24%), Positives = 103/262 (39%), Gaps = 33/262 (12%)

Query: 26  TLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T E+  GQ EA  +L   +          +  A+     L VGPPG GKT LA+ VA E 
Sbjct: 163 TFEDVAGQDEAKESLVEIVDFLHKPERYTEIGAKLPKGALLVGPPGTGKTLLAKAVAGEA 222

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  L    +++   ++FIDEI  +    +  +    E
Sbjct: 223 KVPFFSLSGSSFVEMFVGMGAARVRDLFEQAQEKAPCIIFIDEIDAIGKSRDNAMSSNDE 282

Query: 131 -DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ-----DRFGIPIRLNFYE 184
            +  L+ ++ E     S K       ++AAT R  +L   L      DR  I  R +   
Sbjct: 283 REQTLNQLLAEMDGFDSSKG----VVILAATNRPEILDKALLRPGRFDRRVIVDRPDLKG 338

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            ED+  +  +G K++        A       + TP   G  L  + + A +   K   +E
Sbjct: 339 REDILKVHSKGVKISKEVDMSSIA-------KSTPGAVGSDLANIINEAALRAVKNGRQE 391

Query: 245 IADAALLR-LAIDKMGFDQLDL 265
           +    L   + +   G ++ D 
Sbjct: 392 VIQEDLEEAVEVIIAGKEKKDR 413


>gi|195337341|ref|XP_002035287.1| GM14011 [Drosophila sechellia]
 gi|194128380|gb|EDW50423.1| GM14011 [Drosophila sechellia]
          Length = 331

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 52/267 (19%), Positives = 89/267 (33%), Gaps = 40/267 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             I   RP   +E  G  +  + L VF     A      +++  GPPG+GKTT  Q +AR
Sbjct: 17  PWIEKYRPVKFKEIVGNEDTVARLSVFATQGNA-----PNIIIAGPPGVGKTTTIQCLAR 71

Query: 77  ------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIHRLSIIVE 122
                       EL  +       V  K    A     L      ++ +DE   ++   +
Sbjct: 72  ILLGDSYKEAVLELNASNERGIDVVRNKIKMFAQQKVTLPRGRHKIVILDEADSMTEGAQ 131

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           + L   ME +                   +RF L   T+    +  P+Q R  +      
Sbjct: 132 QALRRTMEIYSST----------------TRFALACNTSE--KIIEPIQSRCAMLRFTKL 173

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA-GRLLRRVRDFAEVAHAKTI 241
            + + L  +++  AK   L  T++    I   ++G  R     L    + F ++      
Sbjct: 174 SDAQVLAKLIE-VAKWEKLNYTEDGLEAIVFTAQGDMRQGLNNLQSTAQGFGDITAENVF 232

Query: 242 -TREIADAALLRLAIDKMGFDQLDLRY 267
              +     LL   I     + +   Y
Sbjct: 233 KVCDEPHPKLLEEMIHHCAANDIHKAY 259


>gi|332021958|gb|EGI62288.1| Replication factor C subunit 4 [Acromyrmex echinatior]
          Length = 356

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 46/237 (19%), Positives = 72/237 (30%), Gaps = 33/237 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+ + +   Q E  +     I  A    +   ++LF GPPG GKT++    AR
Sbjct: 34  PWVEKYRPKNVNDIVEQTEVVN----VIRQAMEHGD-FPNMLFYGPPGTGKTSIIHAAAR 88

Query: 77  ------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD--------VLFIDEIHR 116
                       EL  +       V  K    A    N    D        ++ +DE   
Sbjct: 89  QMFGSMYKDRILELNASDDRGIQVVREKIKSFALRRANPNGPDGKKCPPFKIIILDEADS 148

Query: 117 LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
           ++   +  L   ME                V   LSR     A+        PL D   I
Sbjct: 149 MTGAAQTALRRIMEKES------HSTRFCLVCNYLSRIIKPIASRCTKFRFKPLSDEKSI 202

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                    E+LK    +      +  +     +  M  +   R+ G+      D A
Sbjct: 203 ARLEYICNEENLKAD--KSVLEKIVEASGGDLRQAVMCLQSITRLKGKDYEITADDA 257


>gi|332283343|ref|YP_004415254.1| DNA polymerase III, delta' subunit [Pusillimonas sp. T7-7]
 gi|330427296|gb|AEC18630.1| DNA polymerase III, delta' subunit [Pusillimonas sp. T7-7]
          Length = 636

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 54/273 (19%), Positives = 94/273 (34%), Gaps = 41/273 (15%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPR+ E   GQ      L   +   +     L H  LF G  G+GKTTL++++A+ L   
Sbjct: 11  RPRSFETLIGQDHVVRALTHALSTQR-----LHHAWLFTGTRGVGKTTLSRILAKSLNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAMEDFQL 134
              T+ P     G   A       R V +++        +  ++ ++E+ +Y        
Sbjct: 66  TGITATP----CGHCQACTEIDAGRFVDYVELDAASNRGVDEMTQLLEQAVYAPGSGRFK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             M+ E             ++++        I ATT    +   +  R  +   L     
Sbjct: 122 VYMIDEVHMLTGHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMTA 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           E +   +Q       +     A   +A  + G+ R A  L     D A    A  +T E 
Sbjct: 181 ESIVAHLQEVLGQESMQYETPALRLLAQAASGSMRDALSL----TDQAIAYSAGNLTSEA 236

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
               L            +D ++L ++ R    G
Sbjct: 237 VQGMLG----------TIDQQHLVILLRALAAG 259


>gi|322380101|ref|ZP_08054355.1| DNA polymerase III subunits gamma and tau [Helicobacter suis HS5]
 gi|321147471|gb|EFX42117.1| DNA polymerase III subunits gamma and tau [Helicobacter suis HS5]
          Length = 470

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 69/200 (34%), Gaps = 42/200 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  ++  GQ    + L + ++ A+         LF G  G GKT+ A++ AR L    
Sbjct: 15  RPKHFKDLIGQESVSNTLSLALDHARLAHAY----LFSGLRGSGKTSTARIFARALQCEK 70

Query: 83  RSTS------------------------GPVIAKAGDLAALLTN------LEDRDVLFID 112
             +S                        G    +  D+  ++        L    +  ID
Sbjct: 71  GPSSIPCDSCLNCLDALKDRHLDIIEIDGASNRRIEDVRNIIEQTKYKPSLGRFKIFMID 130

Query: 113 EIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSR-----FTLIAATTRVGL 165
           E H L+      L   +E+    +  ++      +     LSR     F  IA    V  
Sbjct: 131 EAHMLTKEAFNALLKTLEEPPAHVKFILATTDPHKLPATILSRTQHFHFKKIAPKAIVQR 190

Query: 166 LTNPLQDRFGIPIRLNFYEI 185
           L + L D+ G+    +  EI
Sbjct: 191 LQSIL-DQEGVSYEQSALEI 209


>gi|296876245|ref|ZP_06900298.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus
           parasanguinis ATCC 15912]
 gi|296432750|gb|EFH18544.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus
           parasanguinis ATCC 15912]
          Length = 558

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 52/274 (18%), Positives = 89/274 (32%), Gaps = 42/274 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     R +T  +  GQ      L+  +E      E + H  LF GP G GKT++A++ A
Sbjct: 4   ALYRKYRSQTFGQLVGQQVVARTLRQAVE-----QEKISHAYLFSGPRGTGKTSVAKIFA 58

Query: 76  RELGVNFRST------------------------SGPVIAKAGDLAALLTN------LED 105
           + +    +                                   ++  +         L  
Sbjct: 59  KAMNCPNQVNGEPCNDCYICESITNGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLAK 118

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQ--LDLMVGEGPSARSVKINLSRFTLIAATTR- 162
             V  IDE+H LS      L   +E+    +  ++      +     LSR       +  
Sbjct: 119 HKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIK 178

Query: 163 VGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLA-VTDEAACEIAMRSRGTPRI 221
           +  + + L+           YE + ++ I +R       A    + A  +   S  T  I
Sbjct: 179 LPDIVHHLESILATEGIA--YEADAVQIIARRAEGGMRDALSILDQALSLTAGSELTTAI 236

Query: 222 AGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255
           A  +   +   A   +   I    A AAL +LAI
Sbjct: 237 AEEITGSISLAALDQYVAAILDHDATAALDQLAI 270


>gi|21396489|ref|NP_004784.2| lon protease homolog, mitochondrial precursor [Homo sapiens]
 gi|12644239|sp|P36776|LONM_HUMAN RecName: Full=Lon protease homolog, mitochondrial; AltName:
           Full=LONHs; AltName: Full=Lon protease-like protein;
           Short=LONP; AltName: Full=Mitochondrial ATP-dependent
           protease Lon; AltName: Full=Serine protease 15; Flags:
           Precursor
 gi|4580549|gb|AAD24414.1|AF059309_1 LON protease [Homo sapiens]
 gi|12652953|gb|AAH00235.1| Lon peptidase 1, mitochondrial [Homo sapiens]
 gi|119589557|gb|EAW69151.1| protease, serine, 15, isoform CRA_a [Homo sapiens]
 gi|119589560|gb|EAW69154.1| protease, serine, 15, isoform CRA_a [Homo sapiens]
 gi|123989499|gb|ABM83881.1| protease, serine, 15 [synthetic construct]
 gi|123999245|gb|ABM87201.1| protease, serine, 15 [synthetic construct]
 gi|311346898|gb|ADP90374.1| mitochondrial lon protease-like protein [Homo sapiens]
 gi|311346900|gb|ADP90375.1| mitochondrial lon protease-like protein [Homo sapiens]
 gi|311346902|gb|ADP90376.1| mitochondrial lon protease-like protein [Homo sapiens]
 gi|311346904|gb|ADP90377.1| mitochondrial lon protease-like protein [Homo sapiens]
 gi|311346906|gb|ADP90378.1| mitochondrial lon protease-like protein [Homo sapiens]
 gi|311346908|gb|ADP90379.1| mitochondrial lon protease-like protein [Homo sapiens]
 gi|311346910|gb|ADP90380.1| mitochondrial lon protease-like protein [Homo sapiens]
 gi|311346912|gb|ADP90381.1| mitochondrial lon protease-like protein [Homo sapiens]
 gi|311346914|gb|ADP90382.1| mitochondrial lon protease-like protein [Homo sapiens]
 gi|311346916|gb|ADP90383.1| mitochondrial lon protease-like protein [Homo sapiens]
 gi|311346918|gb|ADP90384.1| mitochondrial lon protease-like protein [Homo sapiens]
 gi|311346920|gb|ADP90385.1| mitochondrial lon protease-like protein [Homo sapiens]
 gi|311346922|gb|ADP90386.1| mitochondrial lon protease-like protein [Homo sapiens]
 gi|311346926|gb|ADP90388.1| mitochondrial lon protease-like protein [Homo sapiens]
 gi|311346928|gb|ADP90389.1| mitochondrial lon protease-like protein [Homo sapiens]
 gi|311346930|gb|ADP90390.1| mitochondrial lon protease-like protein [Homo sapiens]
 gi|311346932|gb|ADP90391.1| mitochondrial lon protease-like protein [Homo sapiens]
 gi|311346934|gb|ADP90392.1| mitochondrial lon protease-like protein [Homo sapiens]
 gi|311346936|gb|ADP90393.1| mitochondrial lon protease-like protein [Homo sapiens]
 gi|311346938|gb|ADP90394.1| mitochondrial lon protease-like protein [Homo sapiens]
 gi|311346942|gb|ADP90396.1| mitochondrial lon protease-like protein [Homo sapiens]
 gi|311346944|gb|ADP90397.1| mitochondrial lon protease-like protein [Homo sapiens]
 gi|311346946|gb|ADP90398.1| mitochondrial lon protease-like protein [Homo sapiens]
 gi|311346948|gb|ADP90399.1| mitochondrial lon protease-like protein [Homo sapiens]
 gi|311346950|gb|ADP90400.1| mitochondrial lon protease-like protein [Homo sapiens]
 gi|311346952|gb|ADP90401.1| mitochondrial lon protease-like protein [Homo sapiens]
 gi|311346954|gb|ADP90402.1| mitochondrial lon protease-like protein [Homo sapiens]
 gi|311346956|gb|ADP90403.1| mitochondrial lon protease-like protein [Homo sapiens]
 gi|311346958|gb|ADP90404.1| mitochondrial lon protease-like protein [Homo sapiens]
 gi|311346960|gb|ADP90405.1| mitochondrial lon protease-like protein [Homo sapiens]
 gi|311346962|gb|ADP90406.1| mitochondrial lon protease-like protein [Homo sapiens]
 gi|311346964|gb|ADP90407.1| mitochondrial lon protease-like protein [Homo sapiens]
 gi|311346966|gb|ADP90408.1| mitochondrial lon protease-like protein [Homo sapiens]
 gi|311346968|gb|ADP90409.1| mitochondrial lon protease-like protein [Homo sapiens]
 gi|311346970|gb|ADP90410.1| mitochondrial lon protease-like protein [Homo sapiens]
 gi|311346972|gb|ADP90411.1| mitochondrial lon protease-like protein [Homo sapiens]
 gi|311346974|gb|ADP90412.1| mitochondrial lon protease-like protein [Homo sapiens]
 gi|311346976|gb|ADP90413.1| mitochondrial lon protease-like protein [Homo sapiens]
          Length = 959

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 73/192 (38%), Gaps = 33/192 (17%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI  ++ R      +L F GPPG+GKT++A+ +AR L   +   S
Sbjct: 489 EDHYGMEDVKKRILEFIAVSQLRGSTQGKILCFYGPPGVGKTSIARSIARALNREYFRFS 548

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ ++    +        
Sbjct: 549 VGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLILIDEVDKIGRGYQGDPSSALL 608

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V ++LS+   I        +  PL+DR  + I ++ 
Sbjct: 609 ELLDPEQNANFLD-------HYLDVPVDLSKVLFICTANVTDTIPEPLRDRMEM-INVSG 660

Query: 183 YEIEDLKTIVQR 194
           Y  ++   I +R
Sbjct: 661 YVAQEKLAIAER 672


>gi|326317366|ref|YP_004235038.1| DNA polymerase III subunits gamma and tau [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323374202|gb|ADX46471.1| DNA polymerase III, subunits gamma and tau [Acidovorax avenae
           subsp. avenae ATCC 19860]
          Length = 673

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 48/299 (16%), Positives = 81/299 (27%), Gaps = 78/299 (26%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARE 77
               RP+T  E  GQ      L   +       + L H  LF G  G+GKTT+++++A+ 
Sbjct: 7   ARKYRPKTFSEMVGQEHVVQALSNAL-----IQQRLHHAYLFTGTRGVGKTTVSRILAKS 61

Query: 78  LGVNFRSTSGPVI-----------------------------AKAGDLAALLTNL----- 103
           L        G +                                  ++  LL        
Sbjct: 62  LNCQGEDGQGGITATPCGVCQACRDIDAGRFVDYTELDAASNRGVDEVQGLLEQAVYKPV 121

Query: 104 -EDRDVLFIDEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAAT 160
                V  IDE+H L+      +   +E+    L  ++      +     LSR       
Sbjct: 122 QGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNLR 181

Query: 161 TRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPR 220
                                    E +   + R      +    +A   +A  +RG+ R
Sbjct: 182 PMA---------------------PETVLEHLTRVLAQESVPAEPQALRLLARAARGSMR 220

Query: 221 IAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGP 279
            A  L     D A    +  +        L            +D  Y+  +      G 
Sbjct: 221 DALSL----TDQAIAFGSGQLQEAGVRQMLG----------SVDRSYVFRLIDALASGD 265


>gi|322378607|ref|ZP_08053045.1| DNA polymerase III subunits gamma and tau [Helicobacter suis HS1]
 gi|321148967|gb|EFX43429.1| DNA polymerase III subunits gamma and tau [Helicobacter suis HS1]
          Length = 470

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 69/200 (34%), Gaps = 42/200 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  ++  GQ    + L + ++ A+         LF G  G GKT+ A++ AR L    
Sbjct: 15  RPKHFKDLIGQESVSNTLSLALDHARLAHAY----LFSGLRGSGKTSTARIFARALQCEK 70

Query: 83  RSTS------------------------GPVIAKAGDLAALLTN------LEDRDVLFID 112
             +S                        G    +  D+  ++        L    +  ID
Sbjct: 71  GPSSIPCDSCLNCLDALKDRHLDIIEIDGASNRRIEDVRNIIEQTKYKPSLGRFKIFMID 130

Query: 113 EIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSR-----FTLIAATTRVGL 165
           E H L+      L   +E+    +  ++      +     LSR     F  IA    V  
Sbjct: 131 EAHMLTKEAFNALLKTLEEPPAHVKFILATTDPHKLPATILSRTQHFHFKKIAPKAIVQR 190

Query: 166 LTNPLQDRFGIPIRLNFYEI 185
           L + L D+ G+    +  EI
Sbjct: 191 LQSIL-DQEGVSYEQSALEI 209


>gi|307729576|ref|YP_003906800.1| DNA polymerase III subunits gamma and tau [Burkholderia sp.
           CCGE1003]
 gi|307584111|gb|ADN57509.1| DNA polymerase III, subunits gamma and tau [Burkholderia sp.
           CCGE1003]
          Length = 954

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 48/281 (17%), Positives = 95/281 (33%), Gaps = 30/281 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+      GQ      L   ++  +     L H  LF G  G+GKTTL+++ ++ L   
Sbjct: 11  RPKDFASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFSKALNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAMEDFQL 134
              TS P     G   A     E R V +++        +  ++ ++E  +Y  ++    
Sbjct: 66  TGVTSTP----CGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             M+ E             ++++        I ATT    +   +  R  +   L     
Sbjct: 122 VYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPA 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
             + + ++       +    +A   +A  + G+ R A  L  +   ++            
Sbjct: 181 GHIVSHLEHILGEEKVPYEAQALRLLARAADGSMRDALSLTDQAIAYSA-NQVNEEAVRG 239

Query: 246 ADAALLRLAIDKM--GFDQLDLRYLTMIARNFGGGPVGIET 284
              AL +  + ++     Q D   +  IA       +   T
Sbjct: 240 MLGALDQSYLIRLLDALAQGDGAAVLAIADEMALRSLSFST 280


>gi|332529397|ref|ZP_08405358.1| DNA polymerase III subunits gamma and tau [Hylemonella gracilis
           ATCC 19624]
 gi|332041195|gb|EGI77560.1| DNA polymerase III subunits gamma and tau [Hylemonella gracilis
           ATCC 19624]
          Length = 688

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 54/306 (17%), Positives = 84/306 (27%), Gaps = 53/306 (17%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARE 77
               RPR+  E  GQ      L     A     + L H  LF G  G+GKTT+++V+A+ 
Sbjct: 7   ARKYRPRSFSEMVGQEHVVQAL-----ANALTQQRLHHAYLFTGTRGVGKTTVSRVLAKS 61

Query: 78  LGV-----------------------------NFRSTSGPVIAKAGDLAALLTNL----- 103
           L                               ++            ++ ALL        
Sbjct: 62  LNCIGPDGQGGITAQPCGTCPACLDIDAGRFVDYTELDAASNRGVDEVQALLEQAVYKPV 121

Query: 104 -EDRDVLFIDEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAAT 160
                V  IDE+H L+      +   +E+    L  ++      +     LSR       
Sbjct: 122 QGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNLR 181

Query: 161 -----TRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEA---ACEIA 212
                T +  LT  L              +        R A                E A
Sbjct: 182 PMAPETVLEHLTRVLAAENVAAETGALRLLARAARGSMRDALSLTDQAIAFGGGRLEEAA 241

Query: 213 MRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIA 272
           +R        G +LR +   A          E ++A  L         +++      M  
Sbjct: 242 VRQMLGSADRGHVLRLIDALA--RGDGLTVVETSEALRLHGLSAPATLEEMSAVLQRMAV 299

Query: 273 RNFGGG 278
               GG
Sbjct: 300 HQATGG 305


>gi|311346924|gb|ADP90387.1| mitochondrial lon protease-like protein [Homo sapiens]
          Length = 959

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 73/192 (38%), Gaps = 33/192 (17%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI  ++ R      +L F GPPG+GKT++A+ +AR L   +   S
Sbjct: 489 EDHYGMEDVKKRILEFIAVSQLRGSTQGKILCFYGPPGVGKTSIARSIARALNREYFRFS 548

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ ++    +        
Sbjct: 549 VGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLILIDEVDKIGRGYQGDPSSALL 608

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V ++LS+   I        +  PL+DR  + I ++ 
Sbjct: 609 ELLDPEQNANFLD-------HYLDVPVDLSKVLFICTANVTDTIPEPLRDRMEM-INVSG 660

Query: 183 YEIEDLKTIVQR 194
           Y  ++   I +R
Sbjct: 661 YVAQEKLAIAER 672


>gi|222445468|ref|ZP_03607983.1| hypothetical protein METSMIALI_01107 [Methanobrevibacter smithii
           DSM 2375]
 gi|222435033|gb|EEE42198.1| hypothetical protein METSMIALI_01107 [Methanobrevibacter smithii
           DSM 2375]
          Length = 492

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 41/218 (18%), Positives = 83/218 (38%), Gaps = 10/218 (4%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
                RP+TL+E  G  +  + ++ +++   A       +L VGPPG+GKTTLAQ +ARE
Sbjct: 3   WTDKYRPKTLDEVVGNNKEKALIQKWVDNWNA-GNPQKPLLLVGPPGIGKTTLAQAIARE 61

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
               +   +         + + +        LF D+   L +   + ++   +   +  +
Sbjct: 62  FS-EYIELNASDKRSQDVIKSTIGESSSSKSLFGDDYKLLILDEVDGIHGTNDRGGVRAI 120

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
                 A+   I ++                 L+ +  +           +  ++++ A 
Sbjct: 121 GDIIKKAKHPMILIAN-------DFYSKRIASLKTKCDVLKMSKVRSP-SINKLLKQIAI 172

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
             G+     A  E+A +S G  R A    + + +  EV
Sbjct: 173 NEGIKANPAALKELAKKSNGDMRSAINTFQALANQNEV 210


>gi|195481163|ref|XP_002101540.1| GE15569 [Drosophila yakuba]
 gi|194189064|gb|EDX02648.1| GE15569 [Drosophila yakuba]
          Length = 353

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 53/320 (16%), Positives = 101/320 (31%), Gaps = 43/320 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RPR +++   Q E  + L+  +E        L ++L  GPPG GKT+     +R
Sbjct: 31  PWVEKYRPRNVDDVVEQSEVVAVLRKCVE-----GGDLPNMLLYGPPGTGKTSTILAASR 85

Query: 77  ------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD--------VLFIDEIHR 116
                       EL  +       V  K  + + L  +    D        ++ +DE   
Sbjct: 86  QIFGDMFKDRILELNASDERGINVVRTKIKNFSQLSASSVRPDGKPCPPFKIIILDEADS 145

Query: 117 LSIIVEEILYPAM--EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRF 174
           ++   +  L   M  E       +     +R +    SR +            + + DR 
Sbjct: 146 MTHAAQSALRRTMEKESRSTRFCLICNYVSRIIVPITSRCSKFRFKALGD---DKVIDRL 202

Query: 175 GIPIRLNF--YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR---- 228
                +     E +  K+IV+        A+T   +C            A  L       
Sbjct: 203 KYICAMEGVKIEEDAYKSIVKISGGDLRRAITTLQSCYRLKGPEHIINTA-DLFEMSGVI 261

Query: 229 ----VRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIET 284
               + D+ EV  +     E  +  +  +        Q+  +++  +  + G        
Sbjct: 262 PEYYLEDYLEVCRSG--NYERLEQFVREIGFSAYSVGQMMEQFVEFVVHHPGLNDPQKAK 319

Query: 285 ISAGLSEPRDAIEDLIEPYM 304
           I   L E    ++D    Y+
Sbjct: 320 ICDKLGECCFRLQDGGSEYL 339


>gi|149634399|ref|XP_001506549.1| PREDICTED: similar to protease, serine, 15, partial
           [Ornithorhynchus anatinus]
          Length = 791

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 73/192 (38%), Gaps = 33/192 (17%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI  ++ R      +L F GPPG+GKT++A+ +AR L   +   S
Sbjct: 352 EDHYGMDDVKKRILEFIAVSQLRGSTQGKILCFYGPPGVGKTSIARSIARALNREYFRFS 411

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ ++    +        
Sbjct: 412 VGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLILIDEVDKIGRGYQGDPSSALL 471

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V ++LS+   I        +  PL+DR  + I ++ 
Sbjct: 472 ELLDPEQNANFLD-------HYLDVSVDLSKVLFICTANVTETIPEPLRDRMEM-INVSG 523

Query: 183 YEIEDLKTIVQR 194
           Y  ++   I +R
Sbjct: 524 YVAQEKLAIAER 535


>gi|302907531|ref|XP_003049666.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256730602|gb|EEU43953.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 825

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 55/252 (21%), Positives = 92/252 (36%), Gaps = 30/252 (11%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVARE 77
               +  G  EA   L+  +E  K         A+    VL VGPPG GKT LA+ VA E
Sbjct: 340 TRFSDVHGCDEAKEELQEVVEFLKNPEKFSDLGAKLPKGVLLVGPPGTGKTLLARAVAGE 399

Query: 78  LGVNFRSTSGPVIA------KAGDLAALLTNLEDRD--VLFIDEIHRL----SIIVEEIL 125
            GV F   SG           A  +  L T  + +   ++FIDE+  +    +   +   
Sbjct: 400 AGVPFFYMSGSEFDEIFVGVGAKRVRELFTAAKSKSPAIVFIDELDAIGGKRNPRDQ--- 456

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183
             A     L+ ++ E            +  +I AT    +L   L    RF   + +   
Sbjct: 457 --AHAKQTLNQLLTELDGFDQDT----KIIIIGATNLPTMLDKALTRPGRFDRHVNVELP 510

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           ++     I++  AK   ++   +     A     +      +L      A  A A  +++
Sbjct: 511 DVRGRIAILKHHAKKIKVSPDVDLEAVAARCPGRSGAELENMLNVAALRASRAKATMVSK 570

Query: 244 EIADAALLRLAI 255
           +  D A  R+ +
Sbjct: 571 QDMDWAFDRVTM 582


>gi|195587662|ref|XP_002083580.1| GD13291 [Drosophila simulans]
 gi|194195589|gb|EDX09165.1| GD13291 [Drosophila simulans]
          Length = 331

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 53/283 (18%), Positives = 93/283 (32%), Gaps = 40/283 (14%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M +     + +       I   RP   +E  G  +  + L VF     A      +++  
Sbjct: 1   MPEEPEKTADDKRSHLPWIEKYRPVKFKEIVGNEDTVARLSVFATQGNA-----PNIIIA 55

Query: 61  GPPGLGKTTLAQVVAR------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDR 106
           GPPG+GKTT  Q +AR            EL  +       V  K    A     L     
Sbjct: 56  GPPGVGKTTTIQCLARILLGDSYKEAVLELNASNERGIDVVRNKIKMFAQQKVTLPRGRH 115

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
            ++ +DE   ++   ++ L   ME +                   +RF L   T+    +
Sbjct: 116 KIVILDEADSMTEGAQQALRRTMEIYSST----------------TRFALACNTSE--KI 157

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA-GRL 225
             P+Q R  +       + + L  +++  AK   L  T++    I   ++G  R     L
Sbjct: 158 IEPIQSRCAMLRFTKLSDAQVLAKLIE-VAKWEKLNYTEDGLEAIVFTAQGDMRQGLNNL 216

Query: 226 LRRVRDFAEVAHAKTI-TREIADAALLRLAIDKMGFDQLDLRY 267
               + F ++         +     LL   I     + +   Y
Sbjct: 217 QSTAQGFGDITAENVFKVCDEPHPKLLEEMIHHCAANDIHKAY 259


>gi|332158940|ref|YP_004424219.1| cell division control protein [Pyrococcus sp. NA2]
 gi|331034403|gb|AEC52215.1| cell division control protein [Pyrococcus sp. NA2]
          Length = 840

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 66/306 (21%), Positives = 111/306 (36%), Gaps = 34/306 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
           T E+  G  +A   ++  +E      E            VL  GPPG GKT LA+ VA E
Sbjct: 210 TYEDIGGLKDAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANE 269

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM 129
               F + +GP I           L  +    E+    ++FIDEI  ++   EE++    
Sbjct: 270 ANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKREEVVGEVE 329

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
           +     L+            +  +  +IAAT R   L   L+   RF   I +   + + 
Sbjct: 330 KRVVSQLLT-----LMDGLKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKKG 384

Query: 188 LKTIVQRGAKLTGL--AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
            K I+Q   +   +      EA  +         R     +R + +   V  AK      
Sbjct: 385 RKEILQIHTRGMPIEPDFEKEAVIKALKELEKDERFNKEKIRELIE--RVNKAKDEEEIK 442

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
                 R    ++    +D + L  +A    G  VG + ++A   E       ++   +I
Sbjct: 443 EILKEDRNIYIEIKNKLID-KLLDELAEVTHG-FVGAD-LAALAREAAM----VVLRRLI 495

Query: 306 QQGFIQ 311
           ++G I 
Sbjct: 496 KEGKIN 501



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 46/207 (22%), Positives = 74/207 (35%), Gaps = 23/207 (11%)

Query: 28  EEFTGQVEACSNLKVFIE-------AAKARAEALD-HVLFVGPPGLGKTTLAQVVARELG 79
           ++  G  E    L+  +E       A K         +L  GPPG GKT LA+ VA E  
Sbjct: 547 DDIGGLEEVKQQLREAVEWPLKFPKAFKRLGITPPKGILLYGPPGTGKTLLAKAVATESQ 606

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAMED 131
            NF +  GP +           +  +          ++FIDEI  ++            +
Sbjct: 607 ANFIAIRGPEVLSKWVGESEKRIREIFRKARQAAPAIIFIDEIDAIAPAR----GTTEGE 662

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
              D ++ +  +     +  S   +IAAT R  +L   L    RF   I +   +     
Sbjct: 663 RVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDERARF 722

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSR 216
            I +   +   L   D    E+A R+ 
Sbjct: 723 EIFKVHTRNMPL-GEDVDLRELARRTE 748


>gi|270266910|gb|ACZ65286.1| DNA polymerase III subunits gamma and tau [Dickeya dieffenbachiae]
 gi|270266922|gb|ACZ65287.1| DNA polymerase III subunits gamma and tau [Dickeya dadantii]
 gi|270266924|gb|ACZ65288.1| DNA polymerase III subunits gamma and tau [Dickeya sp. IPO 2019]
 gi|270266926|gb|ACZ65289.1| DNA polymerase III subunits gamma and tau [Dickeya sp. IPO 2093]
 gi|270266928|gb|ACZ65290.1| DNA polymerase III subunits gamma and tau [Dickeya sp. IPO 2094]
 gi|270266932|gb|ACZ65291.1| DNA polymerase III subunits gamma and tau [Dickeya sp. IPO 2098]
 gi|270266934|gb|ACZ65292.1| DNA polymerase III subunits gamma and tau [Dickeya sp. IPO 2187]
 gi|270266936|gb|ACZ65293.1| DNA polymerase III subunits gamma and tau [Dickeya sp. IPO 2188]
 gi|270266938|gb|ACZ65294.1| DNA polymerase III subunits gamma and tau [Dickeya sp. IPO 2189]
 gi|270266940|gb|ACZ65295.1| DNA polymerase III subunits gamma and tau [Dickeya sp. IPO 2190]
 gi|270266942|gb|ACZ65296.1| DNA polymerase III subunits gamma and tau [Dickeya sp. IPO 2191]
 gi|270266944|gb|ACZ65297.1| DNA polymerase III subunits gamma and tau [Dickeya sp. IPO 2192]
 gi|270266946|gb|ACZ65298.1| DNA polymerase III subunits gamma and tau [Dickeya sp. IPO 2222]
 gi|270266948|gb|ACZ65299.1| DNA polymerase III subunits gamma and tau [Dickeya sp. IPO 2225]
 gi|270266950|gb|ACZ65300.1| DNA polymerase III subunits gamma and tau [Dickeya sp. IPO 2234]
 gi|270266952|gb|ACZ65301.1| DNA polymerase III subunits gamma and tau [Dickeya sp. IPO 2235]
 gi|270266954|gb|ACZ65302.1| DNA polymerase III subunits gamma and tau [Dickeya sp. IPO 2236]
 gi|270266956|gb|ACZ65303.1| DNA polymerase III subunits gamma and tau [Dickeya sp. IPO 2237]
 gi|270266958|gb|ACZ65304.1| DNA polymerase III subunits gamma and tau [Dickeya sp. IPO 2238]
 gi|270266960|gb|ACZ65305.1| DNA polymerase III subunits gamma and tau [Dickeya sp. IPO 2239]
 gi|270266962|gb|ACZ65306.1| DNA polymerase III subunits gamma and tau [Dickeya sp. IPO 2240]
 gi|270266964|gb|ACZ65307.1| DNA polymerase III subunits gamma and tau [Dickeya sp. IPO 2241]
 gi|270266966|gb|ACZ65308.1| DNA polymerase III subunits gamma and tau [Dickeya sp. IPO 2276]
 gi|270266968|gb|ACZ65309.1| DNA polymerase III subunits gamma and tau [Dickeya sp. IPO 2277]
 gi|270266970|gb|ACZ65310.1| DNA polymerase III subunits gamma and tau [Dickeya sp. IPO 2278]
          Length = 178

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 53/172 (30%), Gaps = 36/172 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKTT+A+++A+ L    
Sbjct: 8   RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTTIARLLAKGLNCET 63

Query: 83  ------------------------RSTSGPVIAKAGDLAALLTNLE------DRDVLFID 112
                                            K  D   LL N++         V  ID
Sbjct: 64  GITATPCGQCDTCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLID 123

Query: 113 EIHRLSIIVEEILYPAMED--FQLDLMVGEGPSARSVKINLSRFTLIAATTR 162
           E+H LS      L   +E+    +  ++      +     LSR         
Sbjct: 124 EVHMLSRHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSRCLQFHLKAL 175


>gi|148381284|ref|YP_001255825.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A str.
           ATCC 3502]
 gi|153931204|ref|YP_001385661.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A str.
           ATCC 19397]
 gi|153936273|ref|YP_001389067.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A str.
           Hall]
 gi|148290768|emb|CAL84899.1| cell division protein [Clostridium botulinum A str. ATCC 3502]
 gi|152927248|gb|ABS32748.1| ATP-dependent metallopeptidase HflB [Clostridium botulinum A str.
           ATCC 19397]
 gi|152932187|gb|ABS37686.1| ATP-dependent metallopeptidase HflB [Clostridium botulinum A str.
           Hall]
          Length = 658

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 65/262 (24%), Positives = 103/262 (39%), Gaps = 33/262 (12%)

Query: 26  TLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T E+  GQ EA  +L   +          +  A+     L VGPPG GKT LA+ VA E 
Sbjct: 163 TFEDVAGQDEAKESLVEIVDFLHKPERYTEIGAKLPKGALLVGPPGTGKTLLAKAVAGEA 222

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  L    +++   ++FIDEI  +    +  +    E
Sbjct: 223 KVPFFSLSGSSFVEMFVGMGAARVRDLFEQAQEKAPCIIFIDEIDAIGKSRDNAMSSNDE 282

Query: 131 -DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ-----DRFGIPIRLNFYE 184
            +  L+ ++ E     S K       ++AAT R  +L   L      DR  I  R +   
Sbjct: 283 REQTLNQLLAEMDGFDSSKG----VVILAATNRPEILDKALLRPGRFDRRVIVDRPDLKG 338

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            ED+  +  +G K++        A       + TP   G  L  + + A +   K   +E
Sbjct: 339 REDILKVHSKGVKISKEVDMSSIA-------KSTPGAVGSDLANIINEAALRAVKNGRQE 391

Query: 245 IADAALLR-LAIDKMGFDQLDL 265
           +    L   + +   G ++ D 
Sbjct: 392 VIQEDLEEAVEVIIAGKEKKDR 413


>gi|41615258|ref|NP_963756.1| hypothetical protein NEQ475 [Nanoarchaeum equitans Kin4-M]
 gi|40068982|gb|AAR39317.1| NEQ475 [Nanoarchaeum equitans Kin4-M]
          Length = 826

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 45/186 (24%), Positives = 68/186 (36%), Gaps = 23/186 (12%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
           T E+  G  +    ++  +E      E            VL  GPPG GKT LA+ VA E
Sbjct: 189 TYEDIGGMKDVIQKVRELVELPLRHPEIFERLGIEPPKGVLLYGPPGTGKTLLAKAVANE 248

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM 129
            G  F S +GP I           L  +    +     ++FIDEI  ++   +E +    
Sbjct: 249 SGAYFISINGPEIVSKYVGESEAKLREIFEEAQKNAPAIIFIDEIDAIAPKRDEAVGEVE 308

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                 L+            +  +  +IAAT R   L   L+   RF   I +     E 
Sbjct: 309 RRLVAQLLT-----LMDGLKSRGKVIVIAATNRPNALDPALRRPGRFDREIEVPVPNEEA 363

Query: 188 LKTIVQ 193
              I++
Sbjct: 364 RYEILK 369



 Score = 54.3 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 48/206 (23%), Positives = 75/206 (36%), Gaps = 28/206 (13%)

Query: 20  SLLR------PR-TLEEFTGQVEACSNLKVFIE-AAKARAE-----ALDHVLFVGPPGLG 66
           S +R      P+   E+  G  E    L+  +E   K R E         VL  GPPG G
Sbjct: 472 SAMREFYIEIPKVKWEDIGGLEEVKQELRETVEWPLKYRIEELGIKPPKGVLLYGPPGTG 531

Query: 67  KTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLED--RDVLFIDEIHRLS 118
           KT LA+  A E G NF +  GP I           +  +    +     ++FIDEI  ++
Sbjct: 532 KTLLAKAAASESGANFIAVKGPEILNKWVGESERAIREIFRKAKQAAPAIIFIDEIDAIA 591

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGI 176
                 +     +   D +V +  +      +     +I AT R  +L   L    RF  
Sbjct: 592 PARGSDV-----NRVTDRIVNQLLTEMDGITDRGDVIVIGATNRPDILDPALLRPGRFDR 646

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLA 202
            I +   + +    I +  A+     
Sbjct: 647 VIYVPPPDKKARVEIFKIHARKIPKD 672


>gi|300113235|ref|YP_003759810.1| DNA polymerase III gamma and tau subunit [Nitrosococcus watsonii
           C-113]
 gi|299539172|gb|ADJ27489.1| DNA polymerase III, subunits gamma and tau [Nitrosococcus watsonii
           C-113]
          Length = 529

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 44/240 (18%), Positives = 70/240 (29%), Gaps = 53/240 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP    +  GQ +        +     +       LF G  G+GKTTLA+++A+ L    
Sbjct: 11  RPCDFSQVVGQEQVV----RALTNGLDKGRLHHAFLFTGTRGVGKTTLARILAKSLNCKE 66

Query: 83  RSTS------------------------GPVIAKAGDLAALLTNL------EDRDVLFID 112
              S                                D   LL N+          V  ID
Sbjct: 67  GVRSTPCGKCQNCQAIDGGNFVDLIEVDAASRTGVDDTRELLENVHYAPSRGHYKVYLID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H  S      L   +E+                         + ATT    L   +  
Sbjct: 127 EVHMFSTSSFNALLKTLEE------------------PPPHIKFLLATTDPKKLPVTVLS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R  +   L     + +   + R  +   +     A   IA  + G+ R A  LL +  ++
Sbjct: 169 RC-LQFNLRRIASKVIAEHLARILQAEKIPSESHALTLIARAAEGSVRDALSLLDQAINY 227


>gi|225426102|ref|XP_002276951.1| PREDICTED: hypothetical protein isoform 1 [Vitis vinifera]
          Length = 797

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 51/286 (17%), Positives = 96/286 (33%), Gaps = 41/286 (14%)

Query: 9   SRNVSQEDADISLLRPR---------TLEEFTGQVEACSNLKVFIEAAKARAE------- 52
           S+ +  ++     +RP          T  +     E   +L+  +     R +       
Sbjct: 458 SKVIPPDNEFEKRIRPEVIPASEIGVTFADIGAMDEIKESLQELVMLPLRRPDLFEGGLL 517

Query: 53  -ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLED 105
                +L  GPPG GKT LA+ +A E G +F + S   I          ++ AL T    
Sbjct: 518 KPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAK 577

Query: 106 --RDVLFIDEIH-----RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIA 158
               ++F+DE+      R  +   E +     +F              +     R  ++A
Sbjct: 578 VSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFM-------THWDGLLTKPGERILVLA 630

Query: 159 ATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGT 218
           AT R   L   +  RF   I +    +E+ + I++    L       E      + +  T
Sbjct: 631 ATNRPFDLDEAIIRRFERRIMVGLPSVENREMIMK---TLLSKEKVAEGLDFKEL-ATMT 686

Query: 219 PRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLD 264
              +G  L+ +   A     + + ++     L +    +      D
Sbjct: 687 EGYSGSDLKNLCTTAAYRPVRELIQQERLKDLEKKRRAEQRLSPDD 732


>gi|162458054|ref|NP_001105895.1| lon protease homolog, mitochondrial precursor [Zea mays]
 gi|3914006|sp|P93648|LONM_MAIZE RecName: Full=Lon protease homolog, mitochondrial; Flags: Precursor
 gi|1816588|gb|AAC50021.1| LON2 [Zea mays]
          Length = 964

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 51/254 (20%), Positives = 85/254 (33%), Gaps = 38/254 (14%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI   K R  +   ++   GPPG+GKT++ + +AR L   F   S
Sbjct: 421 EDHYGLSDVKERILEFIAVGKLRGTSQGKIICLSGPPGVGKTSIGRSIARALNRQFYRFS 480

Query: 87  GPVIAKAGDLAALLTNLED----------------RDVLFIDEIHRLSI--------IVE 122
              +A   ++                           ++ IDEI +L           + 
Sbjct: 481 VGGLADVAEIKGHRRTYVGAMPGKMVQCLKSVGTANPLVLIDEIDKLGKGHSGDPASALL 540

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V I+LS+   +     + ++ NPL DR  I     +
Sbjct: 541 ELLDPEQNVNFLD-------HYLDVPIDLSKVLFVCTANVIEMIPNPLLDRMEIIAIAGY 593

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH-AKTI 241
              E +       A+      T +A      +   T      L+      A V +  K I
Sbjct: 594 ITDEKMH-----IARDYLEKNTRQACGIKPEQVEVTDTALLALIENYCREAGVRNLQKQI 648

Query: 242 TREIADAALLRLAI 255
            +     AL  +  
Sbjct: 649 EKIYRKIALQLVRQ 662


>gi|310830691|ref|YP_003965792.1| Probable metalloprotease transmembrane protein [Paenibacillus
           polymyxa SC2]
 gi|309250158|gb|ADO59724.1| Probable metalloprotease transmembrane protein [Paenibacillus
           polymyxa SC2]
          Length = 606

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 57/276 (20%), Positives = 104/276 (37%), Gaps = 25/276 (9%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVARE 77
            T ++  G  EA  +++  ++  K         A+    V+F GPPG GKT  A+ +A E
Sbjct: 169 TTFKQIAGHEEAKEDMQYLVDFLKNPLNYTIMGAKLPKGVIFYGPPGTGKTLFAKALAGE 228

Query: 78  LGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
            GV F S SG       V   A  +  +      +   ++FIDEI  +    +   +   
Sbjct: 229 AGVPFFSVSGSDFVEKYVGTGASRVRDMFNLARKKAPCIIFIDEIDAIGRSRDSGSHSEQ 288

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
               L+ ++ E     S +       +I AT R+  L +      RF   I ++  + + 
Sbjct: 289 LQ-TLNAILKEMDGFDSNEG----IIVIGATNRLDDLDSAFIRPGRFDKHIAIHLPDQKS 343

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
              I++  A+   LA   +      +    +      +L      A     K IT +  D
Sbjct: 344 RLDILKIHAQNKPLATDVDLESLSKLTVGLSGASLESILNESSILATSRRQKEITAKEID 403

Query: 248 AA---LLRLAIDKMGFDQLDLRYLTMIARNFGGGPV 280
            A   ++     K G D+     + +++ +  G  +
Sbjct: 404 DAYFKIVMQGHKKKGGDKRHKDEIRLVSWHEAGHAL 439


>gi|281420562|ref|ZP_06251561.1| putative cell division protein FtsH [Prevotella copri DSM 18205]
 gi|281405335|gb|EFB36015.1| putative cell division protein FtsH [Prevotella copri DSM 18205]
          Length = 695

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 63/265 (23%), Positives = 106/265 (40%), Gaps = 33/265 (12%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ  A   +K  ++  K          +     L VGPPG GKT LA+ VA E 
Sbjct: 197 TFKDVAGQEGAKQEVKEIVDFLKNPQKYTDLGGKIPKGALLVGPPGTGKTLLAKAVAGEA 256

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM- 129
           GV F S SG       V   A  +  L    +++   ++FIDEI  +     +   PAM 
Sbjct: 257 GVPFFSMSGSDFVEMFVGVGASRVRDLFRQAKEKSPCIIFIDEIDAVGRARSKN--PAMG 314

Query: 130 ----EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183
                +  L+ ++ E     +     S   ++AAT RV +L + L    RF   I ++  
Sbjct: 315 GNDERENTLNALLTEMDGFGTN----SGVIILAATNRVDMLDSALLRAGRFDREIHVDLP 370

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            + + K I     K   +  T     ++ + +R TP  +G  +  V + A +  A+   +
Sbjct: 371 GLNERKAIFLVHLKPIKIDET----VDVDLLARQTPGFSGADIANVCNEAALIAARHDKK 426

Query: 244 EIADAA-LLRLAIDKMGFDQLDLRY 267
            +     L  +     G ++     
Sbjct: 427 AVCKQDFLDAVDRIVGGLEKKTKVM 451


>gi|221052024|ref|XP_002257588.1| cell division cycle ATPase [Plasmodium knowlesi strain H]
 gi|193807418|emb|CAQ37924.1| cell division cycle ATPase, putative [Plasmodium knowlesi strain H]
          Length = 1132

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 54/257 (21%), Positives = 89/257 (34%), Gaps = 25/257 (9%)

Query: 26   TLEEFTGQVEACSNLK--VFIEA------AKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
            T ++  G  E    LK  +           K  +     +L  GPPG GKT LA+ +A E
Sbjct: 841  TWDDIGGMQEVKEQLKETILYPLEYKHLYTKFNSNYNKGILLYGPPGCGKTLLAKAIANE 900

Query: 78   LGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAM 129
               NF S  GP +     G+  A + +L D+       ++F DEI  L+           
Sbjct: 901  CNANFISVKGPELLTMWFGESEANVRDLFDKARAASPCIIFFDEIDSLAKERNSNNNNDA 960

Query: 130  EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
             D  ++ ++ E               +IAAT R  +L   L    R    I ++  + + 
Sbjct: 961  SDRVINQILTEI----DGINEKKTIFIIAATNRPDILDKALTRPGRLDKLIYISLPDYKS 1016

Query: 188  LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
              +I +   K T L+   +           +      L +   + A     +TI      
Sbjct: 1017 RYSIFKAILKNTPLSEDVDLHDMAKRTEGFSGADITNLCQSAVNEAI---KETIHLINQR 1073

Query: 248  AALLRLAIDKMGFDQLD 264
             A    A  +   +  D
Sbjct: 1074 KAEKGGARTQGADEHYD 1090



 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 76/221 (34%), Gaps = 34/221 (15%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAE--------ALDH 56
           +  L+R   +E  D       T E+  G  +  + ++  IE      E        A   
Sbjct: 470 DEYLNREDYEEHTDD-----ITYEDLGGMKKQLNKIRELIELPLKYPEIFISIGISAPKG 524

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--V 108
           VL  G PG GKT++A+ +A E        +GP I           L  +     ++   +
Sbjct: 525 VLMHGIPGTGKTSIAKAIANESNAYCYIINGPEIMSKHIGESEQKLRKIFKKASEKTPCI 584

Query: 109 LFIDEIH---RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
           +FIDEI             L   +    L LM G   +   +        ++AAT R   
Sbjct: 585 IFIDEIDSIANKRSKSTNELEKRVVSQLLTLMDGLKKNNNVL--------VLAATNRPNS 636

Query: 166 LTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVT 204
           +   L+   RF   I +   + +    I+    K   L   
Sbjct: 637 IDPALRRFGRFDREIEIPVPDEQGRYEILLTKTKKMKLDAD 677


>gi|170692333|ref|ZP_02883496.1| DNA polymerase III, subunits gamma and tau [Burkholderia graminis
           C4D1M]
 gi|170142763|gb|EDT10928.1| DNA polymerase III, subunits gamma and tau [Burkholderia graminis
           C4D1M]
          Length = 996

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 48/281 (17%), Positives = 95/281 (33%), Gaps = 30/281 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+      GQ      L   ++  +     L H  LF G  G+GKTTL+++ ++ L   
Sbjct: 11  RPKDFASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFSKALNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAMEDFQL 134
              TS P     G   A     E R V +++        +  ++ ++E  +Y  ++    
Sbjct: 66  TGVTSTP----CGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             M+ E             ++++        I ATT    +   +  R  +   L     
Sbjct: 122 VYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPA 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
             + + ++       +    +A   +A  + G+ R A  L  +   ++            
Sbjct: 181 GHIVSHLEHILGEEKVPYEAQALRLLARAADGSMRDALSLTDQAIAYSA-NQVNEEAVRG 239

Query: 246 ADAALLRLAIDKM--GFDQLDLRYLTMIARNFGGGPVGIET 284
              AL +  + ++     Q D   +  IA       +   T
Sbjct: 240 MLGALDQSYLIRLLDALAQGDGATVLTIADEMALRSLSFST 280


>gi|15291885|gb|AAK93211.1| LD30525p [Drosophila melanogaster]
 gi|220947208|gb|ACL86147.1| CG8798-PB [synthetic construct]
          Length = 832

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 78/235 (33%), Gaps = 37/235 (15%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           ++  G  +    +  FI  +  +      +L F GPPG+GKT++A+ +AR L   +   S
Sbjct: 338 DDHYGMEDIKKRILEFIAVSSLKGSTQGKILCFHGPPGVGKTSIAKSIARALNREYFRFS 397

Query: 87  GPVIAKAGDLAALLTNLE----------------DRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ ++    +        
Sbjct: 398 VGGMTDVAEIKGHRRTYVGAMPGKLIQCLKKTKIENPLVLIDEVDKIGKGYQGDPSSALL 457

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V ++LSR   I     +  +  PL+DR  +     +
Sbjct: 458 ELLDPEQNANFLD-------HYLDVPVDLSRVLFICTANVIDTIPEPLRDRMELIEMSGY 510

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
              E +       A+   +    +           +      L+R     + V +
Sbjct: 511 VAEEKIA-----IARQYLMPQAMKDCGLTDKHINISEDALNMLIRSYCRESGVRN 560


>gi|89898478|ref|YP_515588.1| DNA polymerase III subunits gamma and tau [Chlamydophila felis
           Fe/C-56]
 gi|89331850|dbj|BAE81443.1| DNA polymerase III gamma/tau [Chlamydophila felis Fe/C-56]
          Length = 445

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 49/253 (19%), Positives = 88/253 (34%), Gaps = 24/253 (9%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
              RP+T  E  GQ    + LK  ++  +         LF G  G GKTTLA++ A+ L 
Sbjct: 11  RKYRPQTFSEILGQDAVVTVLKNALQFQRVAHAY----LFSGIRGTGKTTLARIFAKALN 66

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHR-----LSIIVEEILYPAMEDFQL 134
               + +     +      + +     DV+ ID         +  I E +L+   +    
Sbjct: 67  CTEPTANNEPCNRCCICKEISSGTS-LDVIEIDGASHRGIEDIRQINETVLFTPAKSQYK 125

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             ++ E             ++++   S      ATT    +   +  R          E 
Sbjct: 126 IYIIDEVHMLTKEAFNSLLKTLEEPPSHVKFFLATTENYKIPGTILSRCQKMHLKRIPET 185

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
             +  +      +  L  + EA   IA  ++G+ R A  L   V         K+++ E 
Sbjct: 186 MIVDKLESISQDI-SLETSREALLPIARAAQGSLRDAESLYDYVIGLFP----KSLSPES 240

Query: 246 ADAALLRLAIDKM 258
              AL  ++ D +
Sbjct: 241 VTDALGLVSQDTL 253


>gi|16081896|ref|NP_394300.1| VAT ATPase (VCP-like ATPase) [Thermoplasma acidophilum DSM 1728]
 gi|11387127|sp|O05209|VAT_THEAC RecName: Full=VCP-like ATPase
 gi|1916752|gb|AAC45089.1| VCP-like ATPase [Thermoplasma acidophilum]
 gi|10640117|emb|CAC11969.1| VAT ATPase (VCP-like ATPase) [Thermoplasma acidophilum]
          Length = 745

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 47/197 (23%), Positives = 77/197 (39%), Gaps = 23/197 (11%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARELG 79
           E+  G  E    ++  IE      E            V+  GPPG GKT +A+ VA E G
Sbjct: 190 EDIGGLSEQLGKIREMIELPLKHPELFERLGITPPKGVILYGPPGTGKTLIARAVANESG 249

Query: 80  VNFRSTSGPVIAKA------GDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAMED 131
            NF S +GP I           L  + +  E+    ++FIDEI  ++   EE     ++ 
Sbjct: 250 ANFLSINGPEIMSKYYGQSEQKLREIFSKAEETAPSIIFIDEIDSIAPKREE-----VQG 304

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
                +V +  +            +I AT R+  +   L+   RF   I +   +    K
Sbjct: 305 EVERRVVAQLLTLMDGMKERGHVIVIGATNRIDAIDPALRRPGRFDREIEIGVPDRNGRK 364

Query: 190 TIVQRGAKLTGLAVTDE 206
            I+    +   L +++E
Sbjct: 365 EILMIHTRNMPLGMSEE 381



 Score = 50.1 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 55/289 (19%), Positives = 102/289 (35%), Gaps = 33/289 (11%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHV--------LFVGPPGLGKTTLAQVVARELG 79
           ++  G  +    +K  +E    + +    +        L  GPPG+GKT LA+ VA E  
Sbjct: 467 DDIGGLEDVKREIKETVELPLLKPDVFKRLGIRPSKGFLLYGPPGVGKTLLAKAVATESN 526

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAMED 131
            NF S  GP +           +  +    +     ++F+DEI  ++          + +
Sbjct: 527 ANFISIKGPEVLSKWVGESEKAIREIFKKAKQVAPAIVFLDEIDSIAPRRGTTSDSGVTE 586

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
             ++ ++        +        +I AT R  ++   L    RF   I +   + E   
Sbjct: 587 RIVNQLLTSLDGIEVMNG----VVVIGATNRPDIMDPALLRAGRFDKLIYIPPPDKEARL 642

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
           +I++   K   LA  D    +IA R+ G        L R             T       
Sbjct: 643 SILKVHTKNMPLA-PDVDLNDIAQRTEGYVGADLENLCREAGMNAYRENPDATSVSQKNF 701

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
           L  L   +   D+  +++   ++           T+S  +SE R  ++D
Sbjct: 702 LDALKTIRPSVDEEVIKFYRTLSE----------TMSKSVSERRKQLQD 740


>gi|296232627|ref|XP_002761659.1| PREDICTED: lon protease homolog, mitochondrial isoform 2
           [Callithrix jacchus]
          Length = 924

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 70/192 (36%), Gaps = 33/192 (17%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI  ++ R      +L F GPPG+GKT++A+ +AR L   +   S
Sbjct: 453 EDHYGMEDVKKRILEFIAVSQLRGSTQGKILCFYGPPGVGKTSIARSIARALNREYFRFS 512

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ ++    +        
Sbjct: 513 VGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLILIDEVDKIGRGYQGDPSSALL 572

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V ++LS+   I        +  PL+DR  +     +
Sbjct: 573 ELLDPEQNANFLD-------HYLDVPVDLSKVLFICTANVTDTIPEPLRDRMEVISVSGY 625

Query: 183 YEIEDLKTIVQR 194
              E L  I +R
Sbjct: 626 VAQEKLA-IAER 636


>gi|291333850|gb|ADD93532.1| DNA polymerase III subunits gamma and tau [uncultured marine
           bacterium MedDCM-OCT-S04-C191]
          Length = 625

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 42/240 (17%), Positives = 84/240 (35%), Gaps = 21/240 (8%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              LRP   E+  GQ      L+  + + +         LF G  G+GKT+ A+++ + L
Sbjct: 7   ARKLRPNRFEDLIGQKTISRTLRNAVTSGRVAHA----FLFSGSRGVGKTSAARILTKAL 62

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQ 133
                    P   K  +   +  N    DV  ID      I  +  + + + Y   +   
Sbjct: 63  NCLAPEDGNP-CGKCRNCIEITENASP-DVYEIDAASNRGIENIRELRDNVQYAPAQCRY 120

Query: 134 LDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
              ++ E             ++++   S    I ATT    L   +  R      +    
Sbjct: 121 KVYIIDEAHMLTLESFNALLKTLEEPPSHVKFILATTDPHKLPQTIISRCQRYDFVRV-P 179

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           ++ +   +++      L+++  A   I+ ++ G  R A  ++ +V  F   +       E
Sbjct: 180 LQQMAGFLEKVTVAEQLSISRRALEIISRQAVGGMRDALTMIDQVLSFTGDSAKDEEVLE 239


>gi|20089039|ref|NP_615114.1| replication factor C small subunit 2 [Methanosarcina acetivorans
           C2A]
 gi|19913896|gb|AAM03594.1| replication factor C subunit [Methanosarcina acetivorans C2A]
          Length = 344

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 56/285 (19%), Positives = 90/285 (31%), Gaps = 68/285 (23%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           S +D      R  TLE   G   A   L   +++       L H++F GP   GKTT + 
Sbjct: 3   SMQDLWTLKYRAETLEGMLGNEHAVRTLSELLQSG-----TLPHLIFYGPENSGKTTASL 57

Query: 73  VVARE-----LGVNFRSTSGPVI-----------------------------------AK 92
            +ARE        NF   +                                         
Sbjct: 58  ALARELYGETWKNNFVYFNASDFFDQGKRYLVRDKRFVRILGTDDPKKIYKSVIDIFKEV 117

Query: 93  AGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152
             + A + +   D  +++ID    LS   +  L   ME +                   S
Sbjct: 118 VNEYAGMASIDADYKIIYIDNAESLSSDAQHALRRIMEKYS------------------S 159

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIA 212
               I +TTR   L +PL+ R G+ +   +     LKT ++R A    L ++D A   + 
Sbjct: 160 TCRFILSTTRPSKLISPLRSR-GLQVFFAYVPDSLLKTHLERIALAEKLKLSDGALDAVL 218

Query: 213 MRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257
             ++G    A + L+     A +        E           D+
Sbjct: 219 YLAKGNVARAVQTLQ----LAALRSEGAEITEEIVYEATMKGRDE 259


>gi|19173766|ref|NP_596895.1| lon protease homolog, mitochondrial precursor [Rattus norvegicus]
 gi|81916424|sp|Q924S5|LONM_RAT RecName: Full=Lon protease homolog, mitochondrial; AltName:
           Full=Lon protease-like protein; Short=LONP; AltName:
           Full=Mitochondrial ATP-dependent protease Lon; AltName:
           Full=Serine protease 15; Flags: Precursor
 gi|15076622|dbj|BAB62423.1| Lon [Rattus norvegicus]
 gi|149028183|gb|EDL83621.1| protease, serine, 15 [Rattus norvegicus]
          Length = 950

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 44/208 (21%), Positives = 83/208 (39%), Gaps = 35/208 (16%)

Query: 14  QEDADISLLRPRTL--EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTL 70
           Q D ++ L R +++  E+  G  +    +  FI  ++ R      +L F GPPG+GKT++
Sbjct: 463 QSDENLDLARAQSVLEEDHYGMEDVKKRVLEFIAVSQLRGSTQGKILCFHGPPGVGKTSI 522

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNL----------------EDRDVLFIDEI 114
           A+ +AR LG  +   S   +    ++                        +  ++ IDE+
Sbjct: 523 ARSIARALGREYFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLVLIDEV 582

Query: 115 HRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
            ++    +        E+L P      LD           V ++LS+   I        +
Sbjct: 583 DKIGRGYQGDPSSALLELLDPEQNANFLD-------HYLDVPVDLSKVLFICTANVTDTI 635

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
             PL+DR  + I ++ Y  ++   I +R
Sbjct: 636 PEPLRDRMEM-INVSGYVAQEKLAIAER 662


>gi|18312141|ref|NP_558808.1| replication factor C large subunit [Pyrobaculum aerophilum str.
           IM2]
 gi|42559512|sp|Q8ZYK3|RFCL_PYRAE RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|18159574|gb|AAL62990.1| replication factor C large subunit [Pyrobaculum aerophilum str.
           IM2]
          Length = 422

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 54/236 (22%), Positives = 87/236 (36%), Gaps = 41/236 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFI------------EAAKARAEAL---DHVLFVG 61
             I   RP++  E   Q EA   L  +I              AK R + +     +L  G
Sbjct: 4   PWIEKYRPKSFAEIVNQEEAKYTLASWICLKFRAPKEFCTRWAKKRDKEVAEAKAILLAG 63

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTN---------LEDRDVLFID 112
           PPG+GKTTL   +ARE+       +   +  A  L  ++            E + VLF D
Sbjct: 64  PPGVGKTTLVHALAREIRYELIELNASDVRTADRLRQVIGRGLRESSLFGFEGKMVLF-D 122

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+  L +          +   L+ ++    +A+   I       + A         PL+D
Sbjct: 123 EVDGLHVKE--------DKGGLEEIIEIIETAKIPII-------MTANNPYDPKFRPLRD 167

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
              + + L     E++  +++R     G    +EA   IA  S G  R A   L+ 
Sbjct: 168 -ISLVVNLKRLSEEEVVEVLRRICTSEGAKCEEEALRSIAKSSMGDLRAAINDLQM 222


>gi|325971760|ref|YP_004247951.1| ATP-dependent metalloprotease FtsH [Spirochaeta sp. Buddy]
 gi|324026998|gb|ADY13757.1| ATP-dependent metalloprotease FtsH [Spirochaeta sp. Buddy]
          Length = 655

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 58/247 (23%), Positives = 96/247 (38%), Gaps = 23/247 (9%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAK-------ARAEALDHVLFVGPPGLGKTTLAQVVARE 77
            T ++  GQVEA   L+  +   K         A+    VL VGPPG GKT LA+ VA E
Sbjct: 191 TTFKDVAGQVEAKYELEEVVSFLKHPDHFTKVGAKIPRGVLLVGPPGTGKTLLAKAVAGE 250

Query: 78  LGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
            GV+F  TSG       V   A  +  L          +LFIDE+  +       L    
Sbjct: 251 SGVSFFHTSGSDFVEMFVGMGAARVRDLFEQARKHAPCILFIDELDAVGRTRGGGLGGGN 310

Query: 130 EDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           ++ +  L  ++ E     +         ++AAT R  +L   L    RF   + ++  +I
Sbjct: 311 DEREQTLNQILVEMDGFSTTAG----VIVMAATNRPDVLDPALLRPGRFDRQVVVDLPDI 366

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           ++ + I++   +   L    +        +  +      L+     FA   +  T+  E 
Sbjct: 367 QEREEILKIHCRKIKLEKDVDLKRLARGSAGTSGADLANLVNEAALFAARKNKSTVNMED 426

Query: 246 ADAALLR 252
            + A  +
Sbjct: 427 MEEARDK 433


>gi|313239670|emb|CBY14563.1| unnamed protein product [Oikopleura dioica]
          Length = 475

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 41/212 (19%), Positives = 75/212 (35%), Gaps = 18/212 (8%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPV-----IAKAGDLAALLTNLEDR---DV 108
           +L  GPPG GKT LA+ +A++ G  F      V     I ++  L     ++  +    V
Sbjct: 146 LLMYGPPGCGKTMLARAIAKDAGFKFLVVQPSVVNNKYIGESEKLIQAFFSVAKKLAPTV 205

Query: 109 LFIDEIHRL--SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
           +F+DEI  L  +   +  +    ++ ++   +         K   +   +I AT R   L
Sbjct: 206 MFVDEIEVLLGNRNGDGRVLNEHKEIKIAEFLTAWDGFEQNKG--APVVVIGATNRKECL 263

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
              +  R  I + +     E +  I++           D   CE+        R     +
Sbjct: 264 DAAILRRLPIKVEIPLPSSETILQIIE---SKLPTDQFDVQ-CELTQYVDRMDRWDCSKV 319

Query: 227 RRVRDFAEVAHAKTITREIADAALLRLAIDKM 258
                FA    +       A+  L     D++
Sbjct: 320 HNFVQFAIT--SAVQDLITAEKKLEIPESDEL 349


>gi|282901547|ref|ZP_06309469.1| Peptidase M41, FtsH [Cylindrospermopsis raciborskii CS-505]
 gi|281193590|gb|EFA68565.1| Peptidase M41, FtsH [Cylindrospermopsis raciborskii CS-505]
          Length = 628

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 60/266 (22%), Positives = 97/266 (36%), Gaps = 23/266 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
             ++  G  EA   L+  +   K         A+    VL VGPPG GKT LA+ +A E 
Sbjct: 171 KFDDVAGIEEAKEELQEVVTFLKQPEKFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA 230

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG           A  +  L    +D    ++FIDEI  +       +    +
Sbjct: 231 GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKDNAPCIIFIDEIDAVGRQRGAGIGGGND 290

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E               +IAAT R  +L + L    RF   + ++  +I+
Sbjct: 291 EREQTLNQLLTEMDGFEGNTG----IIIIAATNRPDVLDSALLRPGRFDRQVTVDTPDIK 346

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
               I++  A+   L  +             +      LL            + IT    
Sbjct: 347 GRLEILEVHARNKKLDQSVSLEAIARRTPGFSGADLANLLNEAAILTARRRKEAITLLEI 406

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIA 272
           D A+ R+     G   +D +   +IA
Sbjct: 407 DDAVDRVVAGMEGTPLVDSKSKRLIA 432


>gi|164687436|ref|ZP_02211464.1| hypothetical protein CLOBAR_01077 [Clostridium bartlettii DSM
           16795]
 gi|164603210|gb|EDQ96675.1| hypothetical protein CLOBAR_01077 [Clostridium bartlettii DSM
           16795]
          Length = 666

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 51/219 (23%), Positives = 78/219 (35%), Gaps = 24/219 (10%)

Query: 25  RTLEEFTGQVEACSNLKV---FIEAAKARAE----ALDHVLFVGPPGLGKTTLAQVVARE 77
           +T  +  GQ EA   L     F+   K   E         L VGPPG GKT LA+ VA E
Sbjct: 169 KTFADVAGQDEAKEALTEIVDFLHNPKKYEEIGATMPKGALLVGPPGTGKTLLAKAVAGE 228

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
             V F S SG           A  +  L     ++   ++FIDEI  +    +  +    
Sbjct: 229 AKVPFFSISGSEFVEMFVGMGAAKVRDLFKQANEKAPCIVFIDEIDTIGKKRDSGMPGGN 288

Query: 130 EDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           ++ +  L  ++ E               ++AAT R   L   L    RF   I +   ++
Sbjct: 289 DEREQTLNQLLTEMDGFD----GKKGVVILAATNRPDSLDKALLRPGRFDRRIPVELPDL 344

Query: 186 EDLKTIVQ-RGAKLTGLAVTDEAACEIAMRSRGTPRIAG 223
              + I++     +      D  A   A        +A 
Sbjct: 345 AGREAILKVHAQGVHMAKDIDYNAIARATAGASGAELAN 383


>gi|323526149|ref|YP_004228302.1| DNA polymerase III subunits gamma and tau [Burkholderia sp.
           CCGE1001]
 gi|323383151|gb|ADX55242.1| DNA polymerase III, subunits gamma and tau [Burkholderia sp.
           CCGE1001]
          Length = 944

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 42/253 (16%), Positives = 88/253 (34%), Gaps = 28/253 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+      GQ      L   ++  +     L H  LF G  G+GKTTL+++ ++ L   
Sbjct: 11  RPKDFASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFSKALNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAMEDFQL 134
              +S P     G   A     E R V +++        +  ++ ++E  +Y  ++    
Sbjct: 66  TGVSSTP----CGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             M+ E             ++++        I ATT    +   +  R  +   L     
Sbjct: 122 VYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPA 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
             + + ++       +    +A   +A  + G+ R A  L  +   ++            
Sbjct: 181 GHIVSHLEHILGEEKVPYEAQALRLLARAADGSMRDALSLTDQAIAYSA-NQVNEEAVRG 239

Query: 246 ADAALLRLAIDKM 258
              AL +  + ++
Sbjct: 240 MLGALDQSYLIRL 252


>gi|312864982|ref|ZP_07725210.1| DNA polymerase III, subunit gamma and tau [Streptococcus downei
           F0415]
 gi|311099093|gb|EFQ57309.1| DNA polymerase III, subunit gamma and tau [Streptococcus downei
           F0415]
          Length = 566

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 47/256 (18%), Positives = 90/256 (35%), Gaps = 21/256 (8%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     R +T +E  GQ    + LK  + + K         LF GP G GKT++A++ A+
Sbjct: 4   ALYRKYRSQTFQELVGQEVVATTLKQAVASGKISHAY----LFSGPRGTGKTSVAKIFAK 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
            +    +    P      D+   +T     DV+ ID      +  +  I ++  Y     
Sbjct: 60  AMNCPNQVDGEPCNDC--DICRDITEGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRA 117

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT +  +   +  R         
Sbjct: 118 TYKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAI 177

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            +    + + +      G+A  D+A   IA ++ G  R A  +L +    +         
Sbjct: 178 KQTAIRQHMAE-ILDKEGIAYEDQALNLIARQAEGGMRDALSILDQALSLSADNQVTAAI 236

Query: 243 REIADAALLRLAIDKM 258
            E    ++ + A+D  
Sbjct: 237 AEEITGSVGQAALDDY 252


>gi|256004179|ref|ZP_05429163.1| DNA polymerase III, subunits gamma and tau [Clostridium
           thermocellum DSM 2360]
 gi|281419179|ref|ZP_06250196.1| DNA polymerase III, subunits gamma and tau [Clostridium
           thermocellum JW20]
 gi|255991927|gb|EEU02025.1| DNA polymerase III, subunits gamma and tau [Clostridium
           thermocellum DSM 2360]
 gi|281407328|gb|EFB37589.1| DNA polymerase III, subunits gamma and tau [Clostridium
           thermocellum JW20]
 gi|316941749|gb|ADU75783.1| DNA polymerase III, subunits gamma and tau [Clostridium
           thermocellum DSM 1313]
          Length = 547

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 82/221 (37%), Gaps = 21/221 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP   E+   Q      L+  I + +         LF G  G GKTT+A++ +R +    
Sbjct: 11  RPLVFEDVVEQEHVVRTLRNSICSGRIAHAY----LFCGTRGTGKTTMAKIFSRAVNCLN 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHR-----LSIIVEEILYPAMEDFQLDLM 137
                P      ++   + N    DV+ ID         + ++ +E++Y   +      +
Sbjct: 67  PKDGDPCNQC--EICQGILNGSLLDVIEIDAASNNSVDDIRVLRDEVIYTPSKARYKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++   +    I ATT    L   +  R           ++ +
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKLPATILSRCQ-RFDFRRIPVDSI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
              ++  AK +G+ +  EA+  IA  S G  R A  +L + 
Sbjct: 184 VKRIEYIAKESGVEIRREASKLIAKLSDGALRDAISILDQC 224


>gi|148552984|ref|YP_001260566.1| DNA polymerase III subunits gamma and tau [Sphingomonas wittichii
           RW1]
 gi|148498174|gb|ABQ66428.1| DNA polymerase III, subunits gamma and tau [Sphingomonas wittichii
           RW1]
          Length = 582

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 50/260 (19%), Positives = 86/260 (33%), Gaps = 26/260 (10%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           +S + +         RP+   E  GQ    + L   I     R       L  G  G+GK
Sbjct: 1   MSESSTPYRVLARKYRPQNFNELIGQDAMVTTLANAIR----RGRLAHAFLLTGVRGVGK 56

Query: 68  TTLAQVVARELGV-NFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLS-----I 119
           T+ A+++A+ L         GP I   G     +   E R  DV+ +D     S      
Sbjct: 57  TSTARLIAKALNCIGPDGQGGPTIDPCGVCEPCVAIAEGRHIDVVEMDAASHTSIDDVRE 116

Query: 120 IVEEILYPAMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           I+E + Y ++       ++ E             ++++   +    + ATT V  +   +
Sbjct: 117 IIEAVRYASVSARYKIYIIDEVHMLSKSAFNGLLKTLEEPPAHVKFLFATTEVNKVPITV 176

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
             R      L     + L           G+    EA   IA  + G+ R    +L    
Sbjct: 177 LSRCQ-RFDLRRITADKLAAHFTNVVAAEGVEADPEALALIARAAEGSARDGLSIL---- 231

Query: 231 DFAEVAHAKTITREIADAAL 250
           D A    +  +  +     L
Sbjct: 232 DQAIAHGSGRVEAQQVRDML 251


>gi|327313952|ref|YP_004329389.1| ATP-dependent metallopeptidase HflB [Prevotella denticola F0289]
 gi|326944304|gb|AEA20189.1| ATP-dependent metallopeptidase HflB [Prevotella denticola F0289]
          Length = 665

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 64/268 (23%), Positives = 107/268 (39%), Gaps = 39/268 (14%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ  A   ++  +E  K          +     L +GPPG GKT LA+ VA E 
Sbjct: 179 TFKDVAGQTGAKQEVQEIVEFLKNPKKYTDLGGKIPKGALLIGPPGTGKTLLAKAVAGEA 238

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM- 129
           GV F S SG       V   A  +  +    +++   ++FIDEI  +     +   PAM 
Sbjct: 239 GVPFFSMSGSDFVEMFVGVGASRVRDVFRQAKEKSPCIIFIDEIDAVGRARSKN--PAMG 296

Query: 130 ----EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183
                +  L+ ++ E     +     S   ++AAT RV +L   L    RF   I ++  
Sbjct: 297 GNDERENTLNALLTEMDGFGTN----SGVIVLAATNRVDMLDKALLRAGRFDRQIHVDLP 352

Query: 184 EIEDLKTIV---QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           ++ + K I     R  KL      D  A       R TP  +G  +  V + A +  A+ 
Sbjct: 353 DLTERKAIFLVHMRPLKLEKNLDIDLLA-------RQTPGFSGADIANVCNEAALIAARH 405

Query: 241 ITREIADAA-LLRLAIDKMGFDQLDLRY 267
            +++++    L  +     G ++     
Sbjct: 406 NSKDVSKQDFLDAVDRIVGGLEKKTKVM 433


>gi|325291428|ref|YP_004267609.1| Sigma 54 interacting domain protein [Syntrophobotulus glycolicus
           DSM 8271]
 gi|324966829|gb|ADY57608.1| Sigma 54 interacting domain protein [Syntrophobotulus glycolicus
           DSM 8271]
          Length = 640

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 58/275 (21%), Positives = 94/275 (34%), Gaps = 57/275 (20%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           + I +LRP+  EE  GQ  A   L      AK       H+L  GPPG+GKT+ A+V   
Sbjct: 173 SAIDVLRPKRPEEIVGQENAMRGL-----LAKLATPYPQHILIYGPPGVGKTSAARVALE 227

Query: 77  ELG----------------------VNFRSTSGPVIAKA---------GDLAA------- 98
            +                        + R  + P++             DLA        
Sbjct: 228 TVKQFKNASFSADAPFIEVDGTTLRWDPRDVTNPLLGSVHDPIYQGAKKDLAETGIPEPK 287

Query: 99  --LLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL----DLMVGEGPSARSVKINL- 151
             L+       +LFIDEI  +  ++   L   +ED ++         + P        + 
Sbjct: 288 LGLVNEAHTG-ILFIDEIGEMDALLLNKLLKVLEDKRVFFDSSYYDPQDPQTPLYIKKIF 346

Query: 152 -----SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDE 206
                + F LI ATTR     NP        +     E ED++ I+++  +   + + + 
Sbjct: 347 EEGVPADFVLIGATTRDPSEINPALRSRCTEVYFGPLEPEDVQEIIRQAGEKLNVQL-EA 405

Query: 207 AACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
              EI        R A  +L      A+     + 
Sbjct: 406 GVEEIISDYVIEGRKAINILLDSYGMAKFRERDSD 440


>gi|194336865|ref|YP_002018659.1| AAA family ATPase, CDC48 subfamily [Pelodictyon phaeoclathratiforme
           BU-1]
 gi|194309342|gb|ACF44042.1| AAA family ATPase, CDC48 subfamily [Pelodictyon phaeoclathratiforme
           BU-1]
          Length = 715

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 71/184 (38%), Gaps = 21/184 (11%)

Query: 28  EEFTGQVEACSNLKVFIE--------AAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           E+  G  E    LK  +E          K        ++  G PG GKT LA+ +A E G
Sbjct: 456 EDVGGLDEIKQALKETVEWPLKYAELFKKTDTNPPKGIILYGKPGTGKTYLAKALASESG 515

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAMED 131
           VNF S  GP I           +  L    +     +LF+DEI  L+          +E 
Sbjct: 516 VNFISVKGPQILNRFIGESEKGVRELFRLAKQSAPTILFLDEIDSLAPRRRN---DGVES 572

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
             +D ++ +  +       L   T++AAT R+  +   L    RF +   +   ++   +
Sbjct: 573 GVIDRVISQFLTEMDGIEELKGVTVLAATNRIDRIDPALLRSGRFDLMFEVPLPDLSTRE 632

Query: 190 TIVQ 193
            I +
Sbjct: 633 MIFK 636



 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 59/152 (38%), Gaps = 13/152 (8%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLED 105
           E    V   GPPG GKT + + VA+E    F + SGP I           +  +    + 
Sbjct: 213 EPPKGVFLYGPPGTGKTLIVRAVAQETDAYFINISGPEIMGKYYGESEARVRNIFAEAQS 272

Query: 106 R--DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
               ++FIDEI  ++   E++     E      +V +  S      +  +  +I AT   
Sbjct: 273 HAPSIIFIDEIDAIAPKREDM---GGEKQVEKRVVAQLLSLMDGLESRGKVIVIGATNIP 329

Query: 164 GLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQ 193
             +   L+   RF   I ++  + +    I+ 
Sbjct: 330 NSIDPALRRPGRFDREISISIPDKKGRLEILH 361


>gi|67477198|ref|XP_654105.1| vacuolar sorting protein VPS4 [Entamoeba histolytica HM-1:IMSS]
 gi|56471127|gb|EAL48719.1| vacuolar sorting protein VPS4, putative [Entamoeba histolytica
           HM-1:IMSS]
          Length = 419

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 43/234 (18%), Positives = 80/234 (34%), Gaps = 32/234 (13%)

Query: 1   MMDREGLLSRNVSQEDADISLLR------------PR-TLEEFTGQVEACSNLK------ 41
           M+  E + S +  +E+   +  R            P    E+  G  +A   L+      
Sbjct: 71  MISGERVKSDDPDKEEDAENKARSNAVGNAVLKEKPNVHWEDVIGLEKAKEALQEAVILP 130

Query: 42  -VFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAG 94
             F +    + +    +L  GPPG GK+ LA+ VA E    F S S   +          
Sbjct: 131 IKFPQLFTDKRKPWTGILLFGPPGTGKSFLAKAVATEADSTFYSVSASSLLSKYLGESEK 190

Query: 95  DLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152
            +  L          ++F+DE+  L     +    A    + + +V       S++  L 
Sbjct: 191 MVKELFETARKNKPSIIFVDEVDSLCSSRGDGETEASRRVKTEFLVQMNGVGNSMEGVL- 249

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDE 206
              ++ AT     L   ++ RF   I +   +      +++         +TD 
Sbjct: 250 ---MLGATNIPWQLDTAIRRRFEKRIYIGLPDASARAKMIKWNLGKLPNQLTDN 300


>gi|296131747|ref|YP_003638994.1| ATP-dependent metalloprotease FtsH [Thermincola sp. JR]
 gi|296030325|gb|ADG81093.1| ATP-dependent metalloprotease FtsH [Thermincola potens JR]
          Length = 646

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 57/246 (23%), Positives = 90/246 (36%), Gaps = 23/246 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  E    L+  +E  K         A+    VL  GPPG GKT LA+ VA E 
Sbjct: 160 TFDDVAGADEVKEELQEVVEFLKHPKKFNELGAKIPKGVLLYGPPGTGKTLLARAVAGEA 219

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F + SG       V   A  +  L    +     ++FIDEI  +       L    +
Sbjct: 220 GVPFFTISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIVFIDEIDAVGRQRGAGLGGGHD 279

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E       +       +IAAT R  +L   L    RF   I ++  +++
Sbjct: 280 EREQTLNQLLVEMDGFSPNEG----IIIIAATNRPDILDPALLRPGRFDRQIVVDSPDVK 335

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I+Q   +   L                T      L+      A   + K I  E  
Sbjct: 336 GREEILQVHVRGKPLDEGVNLGVLARRTPGFTGADLANLVNEAALLAARRNKKKIGMEEL 395

Query: 247 DAALLR 252
           + ++ R
Sbjct: 396 EDSIER 401


>gi|145509587|ref|XP_001440732.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124407960|emb|CAK73335.1| unnamed protein product [Paramecium tetraurelia]
          Length = 466

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 41/181 (22%), Positives = 70/181 (38%), Gaps = 18/181 (9%)

Query: 28  EEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           ++  G  +A   LK  I       E  +   +    +L  GPPG GKT LA+  A E   
Sbjct: 164 DDVAGLEKAKEALKEAIITPMRFPELFQGARKPWMGILLYGPPGTGKTFLAKACATECDG 223

Query: 81  NFRS-TSGPVIAK-AGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
            F S +S  +I+K  G+   L+  L          ++FIDE+  ++   E          
Sbjct: 224 TFFSVSSADLISKFVGESERLIKELFNMARESKPTIIFIDEVDSMTGNRESGSGNEASSR 283

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
                + E    + V  N     ++ AT     L   ++ RF   I +   E +   +++
Sbjct: 284 VKTQFLVE---MQGVGNNNESVLVLGATNLPWTLDPAIRRRFEKRIYIPLPEFQGRLSLL 340

Query: 193 Q 193
           +
Sbjct: 341 K 341


>gi|332185894|ref|ZP_08387641.1| DNA polymerase III, subunits gamma and tau [Sphingomonas sp. S17]
 gi|332014252|gb|EGI56310.1| DNA polymerase III, subunits gamma and tau [Sphingomonas sp. S17]
          Length = 559

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 78/240 (32%), Gaps = 22/240 (9%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+T     GQ      L   I     R       L  G  G+GKT+ A+++A+ L
Sbjct: 23  ARKYRPQTFAALIGQDAMVQTLGNAI----KRDRLAHAFLMTGVRGVGKTSTARLIAKAL 78

Query: 79  GV-NFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAME 130
                  T GP I   G         E R +  I+        +  +  I+E   Y A+ 
Sbjct: 79  NCVGPDGTGGPTIQPCGQCEPCRAIAEGRHIDVIEMDAASHTGVDDVREIIEASRYAAVS 138

Query: 131 DFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
                 +V E             ++++   +    + ATT V  +   +  R      L 
Sbjct: 139 ARFKIYIVDEVHMLSKNAFNALLKTLEEPPAHVKFLFATTEVNKVPITVLSRCQ-RFDLR 197

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
               + L           G+   DEA   +A  + G+ R    +L +    A++      
Sbjct: 198 RITADKLAAHFADICVKEGVTAEDEALMLVARAAEGSARDGLSILDQAIAHADLEGGGVT 257


>gi|55378501|ref|YP_136351.1| replication factor C large subunit [Haloarcula marismortui ATCC
           43049]
 gi|57013000|sp|Q5V1F7|RFCL_HALMA RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|55231226|gb|AAV46645.1| replication factor C large subunit [Haloarcula marismortui ATCC
           43049]
          Length = 508

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 73/223 (32%), Gaps = 21/223 (9%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
                RP TL E  G  +A   LK + E      EA   V+  G PG+GKT+ A  +A +
Sbjct: 3   WTEKYRPTTLSEVRGNDKARDALKKWAETWDDHREA---VILYGSPGIGKTSAAHALAND 59

Query: 78  LGVNFRSTSGP------VIAKAGDLAA----LLTNLEDRDVLFIDEIHRLS----IIVEE 123
           +       +        VI +    AA    L      R ++ +DE   +          
Sbjct: 60  MEWPTIELNASDSRTKDVINRVAGEAAKSGTLTAGGGGRRLVIMDEADNIHGNADRGGAR 119

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP-LQDRFGIPIRLNF 182
            +   +++    +++             +    I           P L+D          
Sbjct: 120 AITALVKEASQPMILIANEYYEMSNGLRNNCQDIEFRDVSPRSIVPVLRDLC--RQEGVE 177

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAA-CEIAMRSRGTPRIAGR 224
           YE + L+ + ++ +     AV D  A  E   R      + G 
Sbjct: 178 YESDALQELAEQNSGGLRGAVKDLQAIAETTERLTADDVVTGE 220


>gi|125974631|ref|YP_001038541.1| DNA polymerase III subunits gamma and tau [Clostridium thermocellum
           ATCC 27405]
 gi|125714856|gb|ABN53348.1| DNA polymerase III, subunits gamma and tau [Clostridium
           thermocellum ATCC 27405]
          Length = 547

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 82/221 (37%), Gaps = 21/221 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP   E+   Q      L+  I + +         LF G  G GKTT+A++ +R +    
Sbjct: 11  RPLVFEDVVEQEHVVRTLRNSICSGRIAHAY----LFCGTRGTGKTTMAKIFSRAVNCLN 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHR-----LSIIVEEILYPAMEDFQLDLM 137
                P      ++   + N    DV+ ID         + ++ +E++Y   +      +
Sbjct: 67  PKDGDPCNQC--EICQGILNGSLLDVIEIDAASNNSVDDIRVLRDEVIYTPSKARYKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++   +    I ATT    L   +  R           ++ +
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKLPATILSRCQ-RFDFRRIPVDSI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
              ++  AK +G+ +  EA+  IA  S G  R A  +L + 
Sbjct: 184 VKRIEYIAKESGVEIRREASKLIAKLSDGALRDAISILDQC 224


>gi|167623521|ref|YP_001673815.1| DNA polymerase III subunits gamma and tau [Shewanella halifaxensis
           HAW-EB4]
 gi|167353543|gb|ABZ76156.1| DNA polymerase III, subunits gamma and tau [Shewanella halifaxensis
           HAW-EB4]
          Length = 930

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 55/259 (21%), Positives = 80/259 (30%), Gaps = 59/259 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP T E+  GQ      L   +       + L H  LF G  G+GKT+LA++ A+ L   
Sbjct: 11  RPATFEQMVGQSHVLHALTNALT-----QQRLHHAYLFSGTRGVGKTSLARLFAKGLNCE 65

Query: 82  ------------------------FRSTSGPVIAKAGDLAALLTNLEDRD------VLFI 111
                                             K  D   LL N++ R       V  I
Sbjct: 66  QGVTATPCGKCSACVEIAEGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRYKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSRSSFNALLKTLEE------------------PPEHVKFLLATTDPQRLPVTVL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L     +++ T +        L+  D A   +A  + G+ R A  L     D
Sbjct: 168 SRC-LQFNLKSLTQDEIATQISHILSQEQLSFEDAALTLLAKAANGSMRDALSL----TD 222

Query: 232 FAEVAHAKTITREIADAAL 250
            A    A  +  E     L
Sbjct: 223 QAIAFGAGQVKLEQVQTML 241


>gi|159906347|gb|ABX10865.1| DNA polymerase III gamma and tau subunits [Rhodomonas sp. CCMP1170]
          Length = 370

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 42/200 (21%), Positives = 65/200 (32%), Gaps = 51/200 (25%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN- 81
           RP+      GQ +A  +LK  IE  K         LF G  G GKTTLA++ A+ +    
Sbjct: 13  RPQNFNNMIGQEKATQHLKSSIEEKKXAFAY----LFAGQHGSGKTTLARITAKAINCRS 68

Query: 82  ----------------------FRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDE 113
                                 F             +  ++ N++      +  V  IDE
Sbjct: 69  LKTVPCNTCSNCINIHLGHSFDFYEIDAAKNTGVEKIREIMENIQFTPLMNEYKVCIIDE 128

Query: 114 IHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
            H LS      L   +E           P A++V I         +TT +G + N +  R
Sbjct: 129 AHMLSRNAFNSLLKTLES----------PPAKTVFIL--------STTALGKIPNTIISR 170

Query: 174 FGIPIRLNFYEIEDLKTIVQ 193
                     + +    I +
Sbjct: 171 CQTVYFQPIQDQDLAIAISK 190


>gi|119512416|ref|ZP_01631499.1| AAA ATPase, central region [Nodularia spumigena CCY9414]
 gi|119462945|gb|EAW43899.1| AAA ATPase, central region [Nodularia spumigena CCY9414]
          Length = 611

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 56/227 (24%), Positives = 85/227 (37%), Gaps = 27/227 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVARE 77
           TL++  G  +    LK  I     R + L          VL VGP G GKT  A+ +A E
Sbjct: 89  TLKDIGGLNQELKELKELIAIPLKRPDLLVKLGLEPTHGVLLVGPSGTGKTLTARALAEE 148

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
           LGVN+ +  GP +           L A+          ++FIDEI  L+         A+
Sbjct: 149 LGVNYIALVGPEVITKYYGEAEQKLRAIFEKAAKNAPCIIFIDEIDSLAPDR-----SAV 203

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
           E      +V +  S            L+ AT R   L   L+   RF   I+    +I  
Sbjct: 204 EGEVEKRLVAQLLSLMDGFSQNKGVILLGATNRPDHLDPALRRPGRFDREIQFRVPDING 263

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
            K I++    +   A+  +   ++   +  T    G  L+ V   A 
Sbjct: 264 RKEILE----VLTRAMPLDNTVDLEFIADRTVGFVGADLKAVCQKAA 306



 Score = 50.5 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 42/184 (22%), Positives = 72/184 (39%), Gaps = 21/184 (11%)

Query: 28  EEFTGQVEACSNLKVFIEAA--------KARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           ++  G       L+  +E A        + +A A   +L  GPPG GKT LA+ VA +  
Sbjct: 357 DDIGGLETIKQTLRESVEGALLYPELYKETKARAPKGILLWGPPGTGKTLLAKAVASQAR 416

Query: 80  VNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMED 131
            NF   +GP      V A    +  L       D  V+FIDE+  L+           + 
Sbjct: 417 ANFIGINGPDLLSRWVGASEQAVRELFAKARQADPCVIFIDELDTLAPARGTY---TGDS 473

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
              + +VG+  +        +   +I AT R   +   L    R  + ++++   ++   
Sbjct: 474 GVSNRVVGQLLTELDGLGTGANILVIGATNRPDAIDPALLRAGRLDLQLKVDLPNLDSRC 533

Query: 190 TIVQ 193
            I+Q
Sbjct: 534 KILQ 537


>gi|329765851|ref|ZP_08257417.1| ATPase central domain-containing protein [Candidatus
           Nitrosoarchaeum limnia SFB1]
 gi|329137694|gb|EGG41964.1| ATPase central domain-containing protein [Candidatus
           Nitrosoarchaeum limnia SFB1]
          Length = 364

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 72/188 (38%), Gaps = 13/188 (6%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
                RP+ + +  G  E+ S++  +    K   + L   L VGPPG+GKTT+A + A++
Sbjct: 2   WSEKYRPQNISDMIGNEESRSSIIEWFTKWKKGTKPL---LLVGPPGIGKTTIAYITAKQ 58

Query: 78  LGVNFRSTSGPVIAKAGDLAALLT------NLEDRDVLFIDEIHRLSIIVE----EILYP 127
            G +    +   +     +  +LT      +L    ++FIDE+  +    +    E L  
Sbjct: 59  FGYDVVGLNASDVRSKSRINEILTPVLGNVSLLGIPMIFIDEVDGIHGRGDYGGAEALID 118

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
            +++  + +++           ++ +     +   +      +     +           
Sbjct: 119 ILKEPTVPIVLAANSDESDKMKSIKKVVKTISFKPIPPRLLKVYLENILSKENAKLSPGS 178

Query: 188 LKTIVQRG 195
           L  +++R 
Sbjct: 179 LIKVIERS 186


>gi|209554157|ref|YP_002284525.1| ATP-dependent zinc metallopeptidase - cell division protein
           [Ureaplasma urealyticum serovar 10 str. ATCC 33699]
 gi|209541658|gb|ACI59887.1| ATP-dependent zinc metallopeptidase - cell division protein
           [Ureaplasma urealyticum serovar 10 str. ATCC 33699]
          Length = 715

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 60/266 (22%), Positives = 92/266 (34%), Gaps = 30/266 (11%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAK-------ARAEALDH 56
            + LL  N        S +R     +  G  E    L   ++  K       A A     
Sbjct: 218 SDSLLGTNKGNAKLTKSSVR---FSDVAGIAEVKEELIEIVDFLKEPKKYVAAGARIPKG 274

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA------KAGDLAALLTNLEDR--DV 108
           V+  GPPG GKT +A+ VA E  V F  T+G           A  +  L          +
Sbjct: 275 VMLYGPPGTGKTLIAKAVAGEANVPFFQTTGSSFEDTFVGVGARRVRELFEKARKSAPAI 334

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +FIDEI  ++         A++D  ++ ++ E     +     S   ++AAT R+  L +
Sbjct: 335 IFIDEIDSVAKKR-GNSLTAVQDQTINQLLSELDGFDTS----SGVIVMAATNRLDTLDD 389

Query: 169 PLQ-----DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAG 223
            +      DR       +  E E +  I  R   L+     ++ A   A  S        
Sbjct: 390 AILRPGRFDRQISVNLPDILEREQILRIHSRNKNLSAKVSLEDIARRTAGFSGAQLENVL 449

Query: 224 R--LLRRVRDFAEVAHAKTITREIAD 247
               L  VRD A   H   +   I  
Sbjct: 450 NEAALLSVRDKATSIHMNHLDEAIDR 475


>gi|332535325|ref|ZP_08411124.1| DNA polymerase III subunits gamma and tau [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332035238|gb|EGI71745.1| DNA polymerase III subunits gamma and tau [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 841

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 53/265 (20%), Positives = 81/265 (30%), Gaps = 59/265 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGV- 80
           RP+T  E  GQ      L   +         L H  LF G  G+GKTT+A++ A+ L   
Sbjct: 11  RPQTFHELVGQSHVKQALVNALT-----QNRLHHAYLFTGTRGVGKTTIARIFAKSLNCD 65

Query: 81  -----------------------NFRSTSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                  +          K  D   +L N++         V  I
Sbjct: 66  EGISANPCGQCSSCLDIEAGRYIDLLEIDAASRTKVEDTREILDNVQYAPTRGRYKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSKHSFNALLKTLEE------------------PPEHVKFLLATTDPQKLPVTIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   LN     ++KT ++       L+   +A   I+  + G+ R A  L     D
Sbjct: 168 SRC-LQFNLNALSQSEIKTQLEHVLTREQLSFDTDALSIISKAADGSMRDALSL----TD 222

Query: 232 FAEVAHAKTITREIADAALLRLAID 256
            A       I  +     L  +   
Sbjct: 223 QAIAQTNGDINNQAVQTMLGLMDTH 247


>gi|270284546|ref|ZP_05966311.2| DNA polymerase III subunit gamma/tau [Bifidobacterium gallicum DSM
           20093]
 gi|270276403|gb|EFA22257.1| DNA polymerase III subunit gamma/tau [Bifidobacterium gallicum DSM
           20093]
          Length = 935

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 47/236 (19%), Positives = 80/236 (33%), Gaps = 29/236 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     RP T E   GQ +    L   ++A K     L H  LF GP G GKT+ A+++A
Sbjct: 8   ALYRRYRPDTFEGVVGQDQVTVPLMRALDANK-----LTHAYLFSGPRGCGKTSSARILA 62

Query: 76  RELGVNFRSTSGPVIAKAGDLAAL--LTNLEDR--DVLFIDEIHRLSIIVEEILY----- 126
           R +        GP     G+  +   L N      DV+ ID      +     L      
Sbjct: 63  RCINC----AQGPTSHPCGECESCKDLANGGPGSIDVVEIDAASHNGVEDARELRDRAGF 118

Query: 127 -PAMEDFQLDLMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
            PA + +++ ++         G     + V+        I ATT    +   ++ R    
Sbjct: 119 APARDRYKIFILDEAHMVTPQGFNALLKIVEEPPEHVMFIFATTEPERVIGTIRSR-THH 177

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                   E +   +++  +   +               G+ R    +L ++   A
Sbjct: 178 YPFRLVPQEIMGPYLEQICEQEHIEAEPGVLRLAMRAGGGSVRDTLSVLDQLMVGA 233


>gi|171920576|ref|ZP_02695391.2| ATP-dependent metalloprotease FtsH [Ureaplasma urealyticum serovar
           13 str. ATCC 33698]
 gi|188524128|ref|ZP_03004201.1| ATP-dependent metalloprotease FtsH [Ureaplasma urealyticum serovar
           12 str. ATCC 33696]
 gi|195867456|ref|ZP_03079460.1| putative Cell division protease FtsH homolog [Ureaplasma
           urealyticum serovar 9 str. ATCC 33175]
 gi|198273574|ref|ZP_03206110.1| putative Cell division protease FtsH homolog [Ureaplasma
           urealyticum serovar 4 str. ATCC 27816]
 gi|171903280|gb|EDT49569.1| ATP-dependent metalloprotease FtsH [Ureaplasma urealyticum serovar
           13 str. ATCC 33698]
 gi|195659945|gb|EDX53325.1| ATP-dependent metalloprotease FtsH [Ureaplasma urealyticum serovar
           12 str. ATCC 33696]
 gi|195660932|gb|EDX54185.1| putative Cell division protease FtsH homolog [Ureaplasma
           urealyticum serovar 9 str. ATCC 33175]
 gi|198250094|gb|EDY74874.1| putative Cell division protease FtsH homolog [Ureaplasma
           urealyticum serovar 4 str. ATCC 27816]
          Length = 721

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 60/266 (22%), Positives = 92/266 (34%), Gaps = 30/266 (11%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAK-------ARAEALDH 56
            + LL  N        S +R     +  G  E    L   ++  K       A A     
Sbjct: 218 SDSLLGTNKGNAKLTKSSVR---FSDVAGIAEVKEELIEIVDFLKEPKKYVAAGARIPKG 274

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA------KAGDLAALLTNLEDR--DV 108
           V+  GPPG GKT +A+ VA E  V F  T+G           A  +  L          +
Sbjct: 275 VMLYGPPGTGKTLIAKAVAGEANVPFFQTTGSSFEDTFVGVGARRVRELFEKARKSAPAI 334

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +FIDEI  ++         A++D  ++ ++ E     +     S   ++AAT R+  L +
Sbjct: 335 IFIDEIDSVAKKR-GNSLTAVQDQTINQLLSELDGFDTS----SGVIVMAATNRLDTLDD 389

Query: 169 PLQ-----DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAG 223
            +      DR       +  E E +  I  R   L+     ++ A   A  S        
Sbjct: 390 AILRPGRFDRQISVNLPDILEREQILRIHSRNKNLSAKVSLEDIARRTAGFSGAQLENVL 449

Query: 224 R--LLRRVRDFAEVAHAKTITREIAD 247
               L  VRD A   H   +   I  
Sbjct: 450 NEAALLSVRDKATSIHMNHLDEAIDR 475


>gi|325853892|ref|ZP_08171408.1| ATP-dependent metallopeptidase HflB [Prevotella denticola CRIS
           18C-A]
 gi|325484229|gb|EGC87159.1| ATP-dependent metallopeptidase HflB [Prevotella denticola CRIS
           18C-A]
          Length = 676

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 64/263 (24%), Positives = 107/263 (40%), Gaps = 39/263 (14%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ  A   ++  +E  K          +     L +GPPG GKT LA+ VA E 
Sbjct: 190 TFKDVAGQTGAKQEVQEIVEFLKNPKKYTDLGGKIPKGALLIGPPGTGKTLLAKAVAGEA 249

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM- 129
           GV F S SG       V   A  +  +    +++   ++FIDEI  +     +   PAM 
Sbjct: 250 GVPFFSMSGSDFVEMFVGVGASRVRDVFRQAKEKSPCIIFIDEIDAVGRARSKN--PAMG 307

Query: 130 ----EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183
                +  L+ ++ E     +     S   ++AAT RV +L   L    RF   I ++  
Sbjct: 308 GNDERENTLNALLTEMDGFGTN----SGVIVLAATNRVDMLDKALLRAGRFDRQIHVDLP 363

Query: 184 EIEDLKTIV---QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           ++ + K I     R  KL      D  A       R TP  +G  +  V + A +  A+ 
Sbjct: 364 DLTERKAIFLVHMRPLKLEKNLDIDLLA-------RQTPGFSGADIANVCNEAALIAARH 416

Query: 241 ITREIADAA-LLRLAIDKMGFDQ 262
            +++++    L  +     G ++
Sbjct: 417 NSKDVSKQDFLDAVDRIVGGLEK 439


>gi|307153433|ref|YP_003888817.1| DNA polymerase III subunits gamma and tau [Cyanothece sp. PCC 7822]
 gi|306983661|gb|ADN15542.1| DNA polymerase III, subunits gamma and tau [Cyanothece sp. PCC
           7822]
          Length = 843

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 59/166 (35%), Gaps = 9/166 (5%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +      RP+T ++  GQ      L   I   +         LF GP G GKT+ A+++A
Sbjct: 4   EPLHHKYRPQTFKDLVGQDAISVTLINAINTNRIA----PAYLFTGPRGTGKTSSARILA 59

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAME 130
           + L         P      D+   +      DV+ ID      +  +  I+E   +  ++
Sbjct: 60  KSLNCLETDKPTPTPCGKCDVCKAIARGSALDVIEIDAASNTGVDNIREIIERSQFAPVQ 119

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
                 ++ E  +  S+ +       +      G +     D+ G+
Sbjct: 120 CRYKVYVIDECLTGDSLVLTREGLMRLDNANIQGKMVLSYHDKTGV 165


>gi|218442574|ref|YP_002380895.1| DNA polymerase III subunits gamma/tau [Cyanothece sp. PCC 7424]
 gi|218175345|gb|ACK74076.1| DNA polymerase III, subunits gamma and tau [Cyanothece sp. PCC
           7424]
          Length = 452

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 44/239 (18%), Positives = 82/239 (34%), Gaps = 55/239 (23%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV-- 80
           RP+TL +  GQ    + L   I  +K         LF G  G GKT+  +++A+ L    
Sbjct: 11  RPQTLNDLIGQNAIATTLTNAITLSKIA----PAYLFTGSRGTGKTSTGRILAKSLNCVK 66

Query: 81  ------------------------NFRSTSGPVIAKAGDLAALLTNLE------DRDVLF 110
                                   +           A  +  ++++ +         +  
Sbjct: 67  DNKPTVTPCGECNSCKSIANGSSLDVIELDAASNNSAEGIRDIVSSTQFAPIGRRYKIWI 126

Query: 111 IDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           IDE H LS    ++L   +E+  ++++                   I  TT    L + +
Sbjct: 127 IDEAHALSSAATQVLLKTLEEPPINVI------------------FILCTTDPSKLGDTI 168

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
             R         +  + +   ++  A+   + ++ EA   IA  S+G  R A  LL +V
Sbjct: 169 ISRCQ-RFNFKRFNNDVIVNQLEAIAQSEDINISYEALLLIAKHSQGGMRDATCLLEQV 226


>gi|166368947|ref|YP_001661220.1| cell division protein [Microcystis aeruginosa NIES-843]
 gi|166091320|dbj|BAG06028.1| cell division protein [Microcystis aeruginosa NIES-843]
          Length = 625

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 55/260 (21%), Positives = 90/260 (34%), Gaps = 20/260 (7%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAK-------ARAEALDHVLFVGPPGLGKTTLAQVVARE 77
            T ++  G  EA + L   +E  K         A     VL VGPPG GKT LA+ VA E
Sbjct: 166 TTFKDVAGVEEAKTELAEIVEFLKYPQRYIQIGARIPKGVLLVGPPGTGKTLLAKAVAGE 225

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
            GV+F S SG         A A  +  L    + +   ++FIDE+  +        +   
Sbjct: 226 AGVSFFSISGSEFVELFVGAGAARVRDLFEQAKKKAPCIIFIDELDAIGKSRANGNFMGG 285

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            D +   +              +   ++AAT R   L   L    RF   + ++  ++  
Sbjct: 286 NDEREQTLNQLLTEMDGFNAGDATVIVLAATNRPETLDTALLRPGRFDRQVLVDRPDLAG 345

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
              I++  A    L    +                  L+      A      T+ +E  +
Sbjct: 346 RLKILEIYAGKVKLGSGVDLKQIATRTPGFAGADLANLVNEAALLAARNQRSTVAQEDFN 405

Query: 248 AALLRLAIDKMGFDQLDLRY 267
            A+ R+     G ++     
Sbjct: 406 EAIERVVA---GLEKKSRVL 422


>gi|19113502|ref|NP_596710.1| ribosome biogenesis factor recycling AAA family ATPase
           [Schizosaccharomyces pombe 972h-]
 gi|74676032|sp|O60058|AFG2_SCHPO RecName: Full=ATPase family gene 2 protein
 gi|3116137|emb|CAA18886.1| ribosome biogenesis factor recycling AAA family ATPase
           [Schizosaccharomyces pombe]
          Length = 809

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 58/247 (23%), Positives = 85/247 (34%), Gaps = 27/247 (10%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALD--------HVLFVGPPGLGKTTLAQVVARELG 79
            +  GQ E    LK  +E      E            VL  GPPG  KT  A+ +A E G
Sbjct: 548 SDIGGQEEVKQKLKESVEWPLTHGETFSRLGVRPPKGVLLYGPPGCSKTITAKAIATETG 607

Query: 80  VNFRSTSGPVIAK--AGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMED 131
           +NF +  GP +     G+    +  +  +       V+F DEI  L+           ED
Sbjct: 608 LNFIAVKGPELFDKFVGESERAVRQVFQKARQASPSVIFFDEIDALTANR-------GED 660

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
              D +V    +       L    ++AAT R  ++   L    R    + +     E  K
Sbjct: 661 NSSDRVVAALLNELDGIEALRNVLVLAATNRPDMIDPALMRPGRLDRLLYVGPPNFEARK 720

Query: 190 TIVQRGAKLTGL--AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            IV+  A+       V  +   E      G   +A      +    E   AK I +    
Sbjct: 721 QIVKIQAEKMKFAEDVDLDLIAEKTEGCSGAEVVALCQEAGLIAMHEDLEAKEICQAHFK 780

Query: 248 AALLRLA 254
            ALL L 
Sbjct: 781 TALLALR 787



 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 46/210 (21%), Positives = 75/210 (35%), Gaps = 13/210 (6%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLE--DRDV 108
           VL  GPPG GKT + + VA E      +  GP +           L  +  +       +
Sbjct: 316 VLLYGPPGTGKTMVMRAVAAEANAQVFTIDGPSVVGKYLGETESRLRKIFEDARAHQPSI 375

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +FIDEI  L+    E +  A       L+      A + K       +IAAT R   +  
Sbjct: 376 IFIDEIDALAPKRTEDVSEAESRAVATLLTLLDGMANAGK-----VVVIAATNRPNSIDE 430

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            L+    +   +     +    +      L+G+      A    + SR    +   L   
Sbjct: 431 ALRRPGRLEKEIEIGIPDKSARLDIIKLLLSGVPNEINDAQLEDLASRTHAYVGADLAAV 490

Query: 229 VRDFAEVAHAKTITREIADAALLRLAIDKM 258
           VR+ A  A  +TI+ +   + L      +M
Sbjct: 491 VREAALRAIKRTISLQKDTSGLDIFGAVQM 520


>gi|73987070|ref|XP_868436.1| PREDICTED: similar to Lon protease homolog, mitochondrial precursor
           (Lon protease-like protein) (LONP) (LONHs) isoform 2
           [Canis familiaris]
          Length = 898

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 73/192 (38%), Gaps = 33/192 (17%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI  ++ R      +L F GPPG+GKT++A+ +AR L   +   S
Sbjct: 428 EDHYGMEDVKKRILEFIAVSQLRGSTQGKILCFYGPPGVGKTSIARSIARALNREYFRFS 487

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ ++    +        
Sbjct: 488 VGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLILIDEVDKIGRGYQGDPSSALL 547

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V ++LS+   I        +  PL+DR  + I ++ 
Sbjct: 548 ELLDPEQNANFLD-------HYLDVPVDLSKVLFICTANVTETIPEPLRDRMEM-INVSG 599

Query: 183 YEIEDLKTIVQR 194
           Y  ++   I +R
Sbjct: 600 YVAQEKLAIAER 611


>gi|332029720|gb|EGI69599.1| Spastin [Acromyrmex echinatior]
          Length = 717

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 46/204 (22%), Positives = 74/204 (36%), Gaps = 18/204 (8%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-------LFVGPPGLGKTTLAQVVAR 76
           P   E+  GQ  A   L+  +     R E    +       L  GPPG GKT LA+ VA 
Sbjct: 439 PVQWEDIAGQETAKQALQEMVILPSLRPELFTGLRTPARGLLLFGPPGNGKTLLARAVAT 498

Query: 77  ELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPA 128
           +    F S S   +           + AL     +    V+FIDE+  L    ++  + A
Sbjct: 499 QCNATFFSISAASLTSKYVGEGEKLVRALFAIAREFQPSVIFIDEVDSLLSERKDNEHEA 558

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
               + + +V              R  ++AAT R   L      RF   + +   + +  
Sbjct: 559 SRRLKTEFLVEFDG---LPCNPEERVLVMAATNRPQELDEAALRRFTKRVYVTLPDSQTR 615

Query: 189 KTIVQRGAKLTGLAVTDEAACEIA 212
             +++R        +T E   E+A
Sbjct: 616 IVLLRRLLAKHNDPLTLEELNEMA 639


>gi|328709119|ref|XP_001952026.2| PREDICTED: lon protease homolog, mitochondrial-like [Acyrthosiphon
           pisum]
          Length = 927

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 80/205 (39%), Gaps = 35/205 (17%)

Query: 16  DADISLLRPRTL--EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQ 72
           D +  L R  T+  E+  G  E    +  FI  +K +      +L F GPPG+GKT++A+
Sbjct: 451 DENFDLKRATTILDEDHYGMEEVKKRILEFIAVSKLKGSTHGKILCFHGPPGVGKTSIAK 510

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHR 116
            +AR L   +   S   +    ++                        +  ++ IDE+ +
Sbjct: 511 SIARALNREYFRFSVGGMTDVAEIKGHRRTYVGAMPGKMIQCLKKTSTENPLVLIDEVDK 570

Query: 117 LSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +    +        E+L P      LD           V ++LS+   I A   +  +  
Sbjct: 571 IGRGHQGDPSSALLEMLDPEQNANFLD-------HYLDVSVDLSKVLFICAANVINTIPE 623

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQ 193
           PL+DR  + I ++ Y  E+   I +
Sbjct: 624 PLRDRMEL-IDVSGYVAEEKMAIAK 647


>gi|225550494|ref|ZP_03771443.1| ATP-dependent metalloprotease FtsH [Ureaplasma urealyticum serovar
           2 str. ATCC 27814]
 gi|225379648|gb|EEH02010.1| ATP-dependent metalloprotease FtsH [Ureaplasma urealyticum serovar
           2 str. ATCC 27814]
          Length = 721

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 60/266 (22%), Positives = 92/266 (34%), Gaps = 30/266 (11%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAK-------ARAEALDH 56
            + LL  N        S +R     +  G  E    L   ++  K       A A     
Sbjct: 218 SDSLLGTNKGNAKLTKSSVR---FSDVAGIAEVKEELIEIVDFLKEPKKYVAAGARIPKG 274

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA------KAGDLAALLTNLEDR--DV 108
           V+  GPPG GKT +A+ VA E  V F  T+G           A  +  L          +
Sbjct: 275 VMLYGPPGTGKTLIAKAVAGEANVPFFQTTGSSFEDTFVGVGARRVRELFEKARKSAPAI 334

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +FIDEI  ++         A++D  ++ ++ E     +     S   ++AAT R+  L +
Sbjct: 335 IFIDEIDSVAKKR-GNSLTAVQDQTINQLLSELDGFDTS----SGVIVMAATNRLDTLDD 389

Query: 169 PLQ-----DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAG 223
            +      DR       +  E E +  I  R   L+     ++ A   A  S        
Sbjct: 390 AILRPGRFDRQISVNLPDILEREQILRIHSRNKNLSAKVSLEDIARRTAGFSGAQLENVL 449

Query: 224 R--LLRRVRDFAEVAHAKTITREIAD 247
               L  VRD A   H   +   I  
Sbjct: 450 NEAALLSVRDKATSIHMNHLDEAIDR 475


>gi|67469139|ref|XP_650561.1| ATPase, AAA family protein [Entamoeba histolytica HM-1:IMSS]
 gi|56467200|gb|EAL45175.1| ATPase, AAA family protein [Entamoeba histolytica HM-1:IMSS]
          Length = 622

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 49/241 (20%), Positives = 84/241 (34%), Gaps = 24/241 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAA--------KARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           T +   G  E  + LK  +  A        K   +    +L  GPPG GKT  A+ +A E
Sbjct: 344 TWDNIGGMEEVHNELKRLVVGAVQYPSLYKKFGVDTPAGILLYGPPGCGKTYCAKALANE 403

Query: 78  LGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAM 129
              NF +  GP +     G+    +  L  R       V+F DE+  L+    E      
Sbjct: 404 CKANFIAVKGPQLLNKYVGEAERAVRQLFMRARNSAPCVIFFDELDALAPKRSE------ 457

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
           +   +  +V +  +            ++AAT R   +   +    R    I ++    + 
Sbjct: 458 DSSGVSRIVNQLLTELDGMDVRKDVFVVAATNRPDCIDPAMLRPGRLDRLISVDLPNSDA 517

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
              I++   K   + + D    E   RS      +G  L  +   A V     I +++  
Sbjct: 518 RVDILKTICKRQKVPLADSVNLEKIARSAQVDGFSGADLTALVKEASVRALDEIVKKVGY 577

Query: 248 A 248
            
Sbjct: 578 E 578



 Score = 49.3 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 50/250 (20%), Positives = 84/250 (33%), Gaps = 25/250 (10%)

Query: 34  VEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARELGVNFRST 85
            +  + ++  +E      E   H        +L  GPPG GKT LA+ +A E+GV F   
Sbjct: 47  DKIITEVRELVEYPLLHPEIYKHLGIEPPRGILLHGPPGCGKTLLAKAIAGEVGVAFIEV 106

Query: 86  SGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           S   +           +  L      R   +LFIDEI  ++   +             L+
Sbjct: 107 SATELVGGMSGESESKIRDLFQLASQRAPALLFIDEIDAITPKRDNAQREMERRIVAQLL 166

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRG 195
                 + + K       +I AT R   L   L+   RF   I L        + I+   
Sbjct: 167 SSLDKLSEADK----PVIVIGATNRPDSLDPALRRAGRFDREIALGIPSESQRRQILD-- 220

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255
            K+      D A     +       +   ++   ++ A  A  +  + +     L  +  
Sbjct: 221 -KMMVNLKIDSAVNIEKLAKGTAGYVGADIVALTKEAAIAAIHRIFSGKAGADNLKSIQQ 279

Query: 256 DKMGFDQLDL 265
           D    +Q DL
Sbjct: 280 DVEEENQKDL 289


>gi|320594193|gb|EFX06596.1| DNA replication factor c subunit [Grosmannia clavigera kw1407]
          Length = 386

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 73/224 (32%), Gaps = 11/224 (4%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
                   +   RP +L++ +G  +  + +  F+++ +     L H+L  GPPG GKT+ 
Sbjct: 38  EAEDSLPWVEKYRPVSLDDVSGHQDILATINKFVDSNR-----LPHLLLYGPPGTGKTST 92

Query: 71  AQVVAR-----ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
              +AR     E              +  D+                     +  +    
Sbjct: 93  ILALARRIYGAENTRQMVLELNASDDRGIDVVREQIKTFASTRQIFAASSGPAPSLARYK 152

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
              +++        +    R ++   +             L+  L  R     R +  + 
Sbjct: 153 LIVLDEADAMTNTAQMALRRIMEKYTANTRFCIIANYAHKLSPALLSRC-TRFRFSPLKE 211

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
            D++ +V +      + +  EAA  +   SRG  R A  +L+  
Sbjct: 212 ADIRVLVNKVIADEDVKIMSEAADALVTLSRGDMRRALNVLQAC 255


>gi|320450983|ref|YP_004203079.1| cell division protein FtsH [Thermus scotoductus SA-01]
 gi|320151152|gb|ADW22530.1| cell division protein FtsH [Thermus scotoductus SA-01]
          Length = 617

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 58/262 (22%), Positives = 98/262 (37%), Gaps = 26/262 (9%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVARE 77
            T ++  G  EA   L   ++  K         AE    VL VGPPG GKT LA+ VA E
Sbjct: 162 TTFKDVAGHEEAKRELMEVVDFLKNPKKYLELGAEIPKGVLLVGPPGTGKTLLARAVAGE 221

Query: 78  LGVNFRSTSGPVIA------KAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM 129
            GV F S S            A  + +L  +       ++FIDE+  +       +    
Sbjct: 222 AGVPFFSVSASEFMEMFVGVGASRVRSLFEDARRNAPSIIFIDELDSIGRKRGAGIGGGH 281

Query: 130 EDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           ++ +  L  ++ E               ++AAT R  +L   L    RF   + +    +
Sbjct: 282 DEREQTLNQILSEMDGFEKDTS----VIVLAATNRPDILDPALLRPGRFDRQVVVGLPTL 337

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           E+ + I+    +   +A   +A     +    +      L+      A    AK I +E 
Sbjct: 338 EERRDILLVHMRGKPIAEEVDALELAHLTPGFSGADLKNLVNEAALLAARDGAKKIRKEH 397

Query: 246 ADAALLRLAIDKMGFDQLDLRY 267
              AL ++    +G ++  L+ 
Sbjct: 398 FLKALDKI---VLGLERPALKL 416


>gi|289422936|ref|ZP_06424759.1| DNA polymerase III, gamma and tau subunit [Peptostreptococcus
           anaerobius 653-L]
 gi|289156659|gb|EFD05301.1| DNA polymerase III, gamma and tau subunit [Peptostreptococcus
           anaerobius 653-L]
          Length = 569

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 46/257 (17%), Positives = 79/257 (30%), Gaps = 54/257 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP   E+  GQ       K  I         L H  LF G  G GKT+ A+++AR +   
Sbjct: 10  RPMVFEDVIGQDHII---KTLINQINTNN--LSHAYLFCGTRGTGKTSTAKILARAVNCT 64

Query: 82  F-----------------------RSTSGPVIAKAGDLAALLTNLE------DRDVLFID 112
                                               D+  L   ++         V  ID
Sbjct: 65  HDGDKPCNVCQSCVSIMDASNLDVIEIDAASNNSVDDIRELRDTVKYTPNKSKYKVYIID 124

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS      L   +E+                    S    I ATT    +   +  
Sbjct: 125 EVHMLSSGAFNALLKTLEE------------------PPSYVIFILATTEPNKIPATILS 166

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R           ++ L   ++   +   + ++D+A   +A   +G+ R +  +L +   F
Sbjct: 167 RCQ-RFDFKRIGLDTLVDKMKFICQKENVDISDDALRLVAKNGQGSVRDSLSILDKCLSF 225

Query: 233 AEVAHAKTITREIADAA 249
           +    +     ++  AA
Sbjct: 226 SNGPISMEEVLDLLGAA 242


>gi|110803260|ref|YP_697892.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens SM101]
 gi|110683761|gb|ABG87131.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens SM101]
          Length = 713

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 68/265 (25%), Positives = 106/265 (40%), Gaps = 39/265 (14%)

Query: 26  TLEEFTGQVEACSNL----------KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           T ++  GQ EA  +L          + ++E     A+     L VGPPG GKT LA+ VA
Sbjct: 164 TFKDVAGQDEAKESLVEIVDFLHDTRKYVEIG---AKLPKGALLVGPPGTGKTLLAKAVA 220

Query: 76  RELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYP 127
            E  V F S SG       V   A  +  L    E++   ++FIDEI  +    +  +  
Sbjct: 221 GEAKVPFFSMSGSDFVEMFVGMGAARVRDLFKQAEEKAPCIVFIDEIDAIGKSRDGAIQG 280

Query: 128 AME-DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ-----DRFGIPIRLN 181
             E +  L+ ++ E     S K       ++AAT R  +L   L      DR  I  R +
Sbjct: 281 NDEREQTLNQLLTEMDGFDSSKG----VVILAATNRPEVLDKALLRPGRFDRRIIVDRPD 336

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
               E++  +  R  KL      D +  EIA   + TP   G  L  + + A +   K  
Sbjct: 337 LIGREEILKVHSRDVKL----SDDVSLEEIA---KSTPGAVGADLANIVNEAALRAVKHG 389

Query: 242 TREIADAALLR-LAIDKMGFDQLDL 265
            + +    L   + +   G ++ D 
Sbjct: 390 RKFVIQEDLDEAVEVIIAGQEKRDR 414


>gi|17647857|ref|NP_523915.1| replication factor C subunit 4 [Drosophila melanogaster]
 gi|1703054|sp|P53034|RFC2_DROME RecName: Full=Replication factor C subunit 2; AltName:
           Full=Activator 1 40 kDa subunit; Short=A1 40 kDa
           subunit; AltName: Full=Activator 1 subunit 2; AltName:
           Full=Replication factor C 40 kDa subunit; Short=RF-C 40
           kDa subunit; Short=RFC40; AltName: Full=Replication
           factor C subunit 4; Short=DmRfc4
 gi|639708|gb|AAB60241.1| rfc40 [Drosophila melanogaster]
 gi|7292439|gb|AAF47843.1| replication factor C subunit 4 [Drosophila melanogaster]
 gi|20151645|gb|AAM11182.1| LD40483p [Drosophila melanogaster]
 gi|220944360|gb|ACL84723.1| RfC40-PA [synthetic construct]
 gi|220954324|gb|ACL89705.1| RfC40-PA [synthetic construct]
          Length = 331

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 53/283 (18%), Positives = 93/283 (32%), Gaps = 40/283 (14%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M +     + +       I   RP   +E  G  +  + L VF     A      +++  
Sbjct: 1   MPEEPEKTADDKRSHLPWIEKYRPVKFKEIVGNEDTVARLSVFATQGNA-----PNIIIA 55

Query: 61  GPPGLGKTTLAQVVAR------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDR 106
           GPPG+GKTT  Q +AR            EL  +       V  K    A     L     
Sbjct: 56  GPPGVGKTTTIQCLARILLGDSYKEAVLELNASNERGIDVVRNKIKMFAQQKVTLPRGRH 115

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
            ++ +DE   ++   ++ L   ME +                   +RF L   T+    +
Sbjct: 116 KIVILDEADSMTEGAQQALRRTMEIYSST----------------TRFALACNTSE--KI 157

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA-GRL 225
             P+Q R  +       + + L  +++  AK   L  T++    I   ++G  R     L
Sbjct: 158 IEPIQSRCAMLRFTKLSDAQVLAKLIE-VAKWEKLNYTEDGLEAIVFTAQGDMRQGLNNL 216

Query: 226 LRRVRDFAEVAHAKTI-TREIADAALLRLAIDKMGFDQLDLRY 267
               + F ++         +     LL   I     + +   Y
Sbjct: 217 QSTAQGFGDITAENVFKVCDEPHPKLLEEMIHHCAANDIHKAY 259


>gi|325570730|ref|ZP_08146456.1| DNA polymerase III, gamma/tau subunit DnaX [Enterococcus
           casseliflavus ATCC 12755]
 gi|325156576|gb|EGC68756.1| DNA polymerase III, gamma/tau subunit DnaX [Enterococcus
           casseliflavus ATCC 12755]
          Length = 573

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 39/259 (15%), Positives = 78/259 (30%), Gaps = 30/259 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           R +  ++  GQ      LK  I+        + H  LF GP G GKT+ A++ A+ +   
Sbjct: 11  RSQRFDDVVGQKAITQTLKNAID-----QNQISHAYLFTGPRGTGKTSAAKIFAKAINCP 65

Query: 82  -------------FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
                         RS +        ++ A   N  + ++ FI +    +    E     
Sbjct: 66  NQVNGEPCNECDMCRSITAGTQEDVIEIDAASNNGVE-EIRFIRDRANYAPTQAEYKVYI 124

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +++  +          ++++        I ATT    +   +  R            + +
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPRKNVVFILATTEPHKIPATIISRTQRFDFKRINTQDIV 184

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
                         +T       A   +   R A   +R      + A A +        
Sbjct: 185 --------GHLETVLTTSEINYEAEALQIIARAAEGGMRDALSITDQAIAFSDGTVTTQD 236

Query: 249 ALLRLAIDKMGFDQLDLRY 267
           AL       + ++ +D   
Sbjct: 237 ALEVTG--SLSYEMMDRLM 253


>gi|300721962|ref|YP_003711242.1| DNA polymerase III subunit tau and gamma [Xenorhabdus nematophila
           ATCC 19061]
 gi|297628459|emb|CBJ89024.1| DNA polymerase III, tau and gamma subunits; DNA elongation factor
           III [Xenorhabdus nematophila ATCC 19061]
          Length = 654

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 86/245 (35%), Gaps = 31/245 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+   +  GQ    + L     A     + L H  LF G  G+GKTT+A+++A+ L   
Sbjct: 11  RPQIFSDVVGQQHVLTAL-----ANGLEHQRLHHAYLFSGTRGVGKTTIARLLAKGLNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILY------PAMEDFQ 133
              T  P     G     L   + R  D++ ID   R  +     L       PA   F+
Sbjct: 66  TGITKTP----CGQCTNCLEIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFK 121

Query: 134 LDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           + L+               ++++        + ATT    L   +  R  +   L   ++
Sbjct: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDV 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
             + + ++       +     A   +A  + G+ R A  L     D A       +T +I
Sbjct: 181 NQISSQLEHVLHAEQIESDFRARQLLARAADGSMRDALSL----TDQAIALGGGKLTSDI 236

Query: 246 ADAAL 250
               L
Sbjct: 237 VSQML 241


>gi|296185108|ref|ZP_06853518.1| ATP-dependent metallopeptidase HflB [Clostridium carboxidivorans
           P7]
 gi|296049942|gb|EFG89366.1| ATP-dependent metallopeptidase HflB [Clostridium carboxidivorans
           P7]
          Length = 491

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 54/268 (20%), Positives = 100/268 (37%), Gaps = 27/268 (10%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGK 67
           E++    +R     +  G  EA  N++  IE  K         A+    ++  GPPG GK
Sbjct: 55  EESKDVKIR---FSDVAGSEEAKENMQDIIEFLKNPKKFEDFGAKIPKGIILYGPPGTGK 111

Query: 68  TTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSI 119
           T LA+ +A E G  F  TSG       V   A  +  L          ++FIDEI  +  
Sbjct: 112 TLLAKALAGETGSEFIPTSGSYFIEKYVGVGASRVRKLFNKARKNSPAIIFIDEIDAIGG 171

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIP 177
                   + +   L+ ++ E         +     ++AAT R+ +L + L    RF   
Sbjct: 172 KRGSGKDTSEDAKTLNQLLVEMDGFN----DKENVIVVAATNRLDMLDDALLRAGRFDRH 227

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
           + +   ++     I++  +K   L+ + +           +      ++     +A   +
Sbjct: 228 VMVGLPDLNARYKILKVHSKNKPLSPSVDLFQIAKQTVYMSGADLANVINEASIYAIKEN 287

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDL 265
              IT    D A+ ++     G ++ D 
Sbjct: 288 YSEITLNHIDKAMNKIIA---GDEKKDR 312


>gi|146304435|ref|YP_001191751.1| ATPase central domain-containing protein [Metallosphaera sedula DSM
           5348]
 gi|145702685|gb|ABP95827.1| AAA ATPase, central domain protein [Metallosphaera sedula DSM 5348]
          Length = 369

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 45/189 (23%), Positives = 69/189 (36%), Gaps = 22/189 (11%)

Query: 24  PR-TLEEFTGQVEACSNLKVFIEAAKARAEALD-----HVLFVGPPGLGKTTLAQVVARE 77
           P+ TL E  G  +    LK  +     R +         +L  GPPG GKT +A  VA E
Sbjct: 95  PKVTLNEIVGLEDVKEALKEAVVYPSKRPDLFPLGWPRGILLYGPPGCGKTMIAAAVANE 154

Query: 78  LGVNFRSTSGPVI------------AKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVEEI 124
           L   F       I            AK    A  L+  E++  ++FIDE+  L       
Sbjct: 155 LDSEFIHVDAASIMSKWLGEAEKNVAKIFKTARELSKKENKPAIIFIDELDALLASYTSE 214

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           +          L   +G    + K  +S+  +I AT +   L  P   RF   I +   +
Sbjct: 215 VGGEARVRNQFLKEMDG---LADKNEISKVYVIGATNKPWRLDEPFLRRFQKRIYITLPD 271

Query: 185 IEDLKTIVQ 193
                 +++
Sbjct: 272 KAHRLELLK 280


>gi|429100|emb|CAA53625.1| Lon protease-like protein [Homo sapiens]
 gi|741362|prf||2007252A ATP-dependent lon protease
          Length = 937

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 73/192 (38%), Gaps = 33/192 (17%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI  ++ R      +L F GPPG+GKT++A+ +AR L   +   S
Sbjct: 467 EDHYGMEDVKKRILEFIAVSQLRGSTQGKILCFYGPPGVGKTSIARSIARALNREYFRFS 526

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ ++    +        
Sbjct: 527 VGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLILIDEVDKIGRGYQGDPSSALL 586

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V ++LS+   I        +  PL+DR  + I ++ 
Sbjct: 587 ELLDPEQNANFLD-------HYLDVPVDLSKVLFICTANVTDTIPEPLRDRMEM-INVSG 638

Query: 183 YEIEDLKTIVQR 194
           Y  ++   I +R
Sbjct: 639 YVAQEKLAIAER 650


>gi|313664905|ref|YP_004046776.1| ATP-dependent metallopeptidase HflB [Mycoplasma leachii PG50]
 gi|312949694|gb|ADR24290.1| ATP-dependent metallopeptidase HflB [Mycoplasma leachii PG50]
          Length = 648

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 58/248 (23%), Positives = 97/248 (39%), Gaps = 29/248 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAK-------ARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G  E  S L   ++  K       A A A   VL  GPPG GKT LA+ VA E 
Sbjct: 168 KFSDVAGIEEEKSELVELVDYLKQPAKYASAGARAPKGVLMEGPPGTGKTLLAKAVAGEA 227

Query: 79  GVNFRSTSGPVIA------KAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAME 130
            V+F S +G           A  +  +    +     ++FIDEI  +       +     
Sbjct: 228 NVSFFSIAGSEFEEMFVGVGASRVREMFNEAKKSAPAIIFIDEIDAVGRKRNSAIGTGTN 287

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
           +  L+ ++ E     +     S   ++AAT RV +L   L    RF   I+++  +I++ 
Sbjct: 288 EQTLNQLLVELDGFETN----SGIIVMAATNRVDVLDPALLRPGRFDRVIQVSLPDIKER 343

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV----AHAKTITRE 244
           + I++  A+   +      + +    +  TP  +G  L  V + A +         I   
Sbjct: 344 EQILKLHARNKKID----PSIDWHRIAERTPGFSGAQLENVLNEAAILMVREGKTVIGVN 399

Query: 245 IADAALLR 252
             D A+ R
Sbjct: 400 EIDEAIDR 407


>gi|224011257|ref|XP_002295403.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|209583434|gb|ACI64120.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 208

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 48/201 (23%), Positives = 72/201 (35%), Gaps = 12/201 (5%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRST------SGPVIAKAGDLAALLTNLEDRDVLF 110
           +L  GPPG GKT LA+ VA E    + S       S  V      +  L    +   V+F
Sbjct: 1   ILLHGPPGCGKTKLAKAVAGEAQAAYLSVGPSDILSKYVGESEASVRGLFLEGDKCAVIF 60

Query: 111 IDEIHRL--SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
            DEI  L  S + E++  P           G+  +A   +    R  ++AAT R      
Sbjct: 61  FDEIDALGRSRVDEDVQTPTRSSSS----AGKQGNAVKPRQPKPRVIVVAATNRPEDCDP 116

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            L  RF   + +     +D K I++R        +T     E+A+ + G        + R
Sbjct: 117 ALLRRFACRVLVGLPSRKDRKKIIKRLLSDVKNDLTPSQLDELALATEGWSGSDLESMTR 176

Query: 229 VRDFAEVAHAKTITREIADAA 249
               A V             A
Sbjct: 177 EAVMAPVRETLCAAAIQKRKA 197


>gi|315231037|ref|YP_004071473.1| cell division FtsH-like protein [Thermococcus barophilus MP]
 gi|315184065|gb|ADT84250.1| cell division FtsH-like protein [Thermococcus barophilus MP]
          Length = 796

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 58/269 (21%), Positives = 94/269 (34%), Gaps = 34/269 (12%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
           T E+  G  +    ++  IE      E            VL  GPPG GKT LA+ VA E
Sbjct: 180 TYEDIGGLKDVIQKIREMIELPLKHPEIFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANE 239

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM 129
              +F + +GP I           L  +    E+    ++FIDEI  ++    E     +
Sbjct: 240 ANAHFIAINGPEIMSKYYGESEERLREVFKEAEENAPSIIFIDEIDAIAPKRGE-----V 294

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                  +V +  +      +  +  +I AT R   L   L+   RF   I +   + + 
Sbjct: 295 TGEVEKRVVAQLLALMDGLKSRGKVIVIGATNRPDALDPALRRPGRFDREIEVGVPDRQG 354

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL--RRVRDFAEVAHAKTITREI 245
            K I+Q   +   +        E   R     RI   L    R RD    A  K    + 
Sbjct: 355 RKEILQIHTRGMPI--------EPEFRKSEVKRILEGLRGDERFRDIINRAIEKVERAKD 406

Query: 246 ADAALL-RLAIDKMGFDQLDLRYLTMIAR 273
                     +D+  +D++  R +  +  
Sbjct: 407 EKEIQDILKNLDERLYDEVKHRLIDALLE 435



 Score = 52.8 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 47/209 (22%), Positives = 76/209 (36%), Gaps = 24/209 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVARE 77
             ++  G  E    L+  +E      EA           +L  GPPG GKT LA+ VA E
Sbjct: 515 RWDDIGGLEEVKEALREAVEWPLKYPEAFQALGINPPKGILLYGPPGTGKTLLAKAVATE 574

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAM 129
              NF    GP +          ++  +          V+FIDEI  ++      +    
Sbjct: 575 SEANFIGIRGPEVLSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRGTDV---- 630

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            +   D ++ +  +        S   +IAAT R  +L   L    RF   I +   + + 
Sbjct: 631 -NRVTDRLINQLLTEMDGIEENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKA 689

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSR 216
              I +   +   L+  D    E+A R+ 
Sbjct: 690 RYEIFKVHTRKMPLS-EDVDLKELAKRTE 717


>gi|170108166|ref|XP_001885292.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164639768|gb|EDR04037.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 770

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 55/227 (24%), Positives = 84/227 (37%), Gaps = 15/227 (6%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--V 108
           VL  GPPG GKT LA  +A ELGV F S S P I           L       +     +
Sbjct: 159 VLLHGPPGCGKTLLANAMAGELGVPFISISAPSIVSGMSGESEKTLRDTFEEAKRVAPCL 218

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           LFIDEI  ++    E     ME   +   +         K +     ++ AT R   L  
Sbjct: 219 LFIDEIDAITPKR-ESAQREMERRIVAQFLTCMDDMSWDKTDNKPVIVMGATNRPDSLDA 277

Query: 169 PLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
            L+   RF   I +   + E    I+Q    +    +  +        ++ TP   G  L
Sbjct: 278 ALRRAGRFDHEISMGVPDEEARSKILQ----VLCAKLRLDGDFNFTTLAKATPGYVGADL 333

Query: 227 RRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIAR 273
             +   A +   K I ++++D  L+       G      + ++MI  
Sbjct: 334 SALTGAAGIIAVKRIFKQLSDGTLILPDPTPDGVSSTLEQDVSMIID 380



 Score = 49.3 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 51/220 (23%), Positives = 81/220 (36%), Gaps = 19/220 (8%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD-- 107
           EA   VL  GPPG GKT LA+ VA E   NF S  GP +     G+    +  +  R   
Sbjct: 494 EAACGVLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESERAVRQVFSRARA 553

Query: 108 ----VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
               V+F DE+  L    ++ L  +       L+           ++  +   + A T  
Sbjct: 554 SSPCVIFFDELDALVPRRDDSLSESSARVVNTLLT------ELDGLDTRKAVYVIAATNR 607

Query: 164 GLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAG 223
             + +P   R G   +L + ++   +   +R   L  +             +        
Sbjct: 608 PDMIDPAMVRPGRLDKLLYVDLPQPE---ERSEILRTMTRKVPLGNLEGQSADLIRERIE 664

Query: 224 RLLRRVRDFAEVAHAKTITREIADAALLRL--AIDKMGFD 261
            L++   D    A    + RE    AL R   A+D+MG D
Sbjct: 665 LLVKEKCDGYSGADLAALVREAGVIALKRTLGALDQMGED 704


>gi|308506593|ref|XP_003115479.1| CRE-FIGL-1 protein [Caenorhabditis remanei]
 gi|308256014|gb|EFO99966.1| CRE-FIGL-1 protein [Caenorhabditis remanei]
          Length = 595

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 44/197 (22%), Positives = 68/197 (34%), Gaps = 18/197 (9%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAE-------ALDHVLFVGPPGLGKTTLAQVVARELGV 80
            +  G   A   L+  +     R +           VL  GPPG GKT + + VA +   
Sbjct: 318 ADVAGLEGAKKALREIVVLPFKRPDVFTGIRAPPKGVLLFGPPGTGKTMIGRCVASQCKA 377

Query: 81  NFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAMEDF 132
            F + S   +           + AL +    +   V+FIDEI  L     E  + +    
Sbjct: 378 TFFNISASSLTSKWVGEGEKLVRALFSVARLKLPSVIFIDEIDSLLSARSESEHESSRRI 437

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           + + +V              R  ++ AT R   L    + RF   + +   E E    IV
Sbjct: 438 KTEFLVQLDG---VNTAPDERLLVLGATNRPQELDEAARRRFQKRLYIALPEPESRTQIV 494

Query: 193 QRGAKLTGLAVTDEAAC 209
           Q   K T   +TD    
Sbjct: 495 QNLLKGTRHDITDHNLE 511


>gi|193785434|dbj|BAG54587.1| unnamed protein product [Homo sapiens]
          Length = 923

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 73/192 (38%), Gaps = 33/192 (17%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI  ++ R      +L F GPPG+GKT++A+ +AR L   +   S
Sbjct: 453 EDHYGMEDVKKRILEFIAVSQLRGSTQGKILCFYGPPGVGKTSIARSIARALNREYFRFS 512

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ ++    +        
Sbjct: 513 VGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLILIDEVDKIGRGYQGDPSSALL 572

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V ++LS+   I        +  PL+DR  + I ++ 
Sbjct: 573 ELLDPEQNANFLD-------HYLDVPVDLSKVLFICTANVTDTIPEPLRDRMEM-INVSG 624

Query: 183 YEIEDLKTIVQR 194
           Y  ++   I +R
Sbjct: 625 YVAQEKLAIAER 636


>gi|189423436|ref|YP_001950613.1| DNA polymerase III subunits gamma and tau [Geobacter lovleyi SZ]
 gi|189419695|gb|ACD94093.1| DNA polymerase III, subunits gamma and tau [Geobacter lovleyi SZ]
          Length = 551

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 48/237 (20%), Positives = 80/237 (33%), Gaps = 31/237 (13%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +      RP+T    TGQ      L+  I+  +         LF G  G+GKT+ A+++A
Sbjct: 4   EVLARKYRPQTFAGLTGQEHVSRTLQNAIDTGRVAHA----FLFTGARGVGKTSTARILA 59

Query: 76  RELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL------YP 127
           + L      T  P  V     ++    T+    DV  ID      +     L       P
Sbjct: 60  KALNCEQGVTLEPCNVCPHCREI----TDGSSTDVFEIDGASNTGVDDVRELRDNSRYLP 115

Query: 128 AMEDFQLDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +   +++ ++               ++++        I ATT    L   +  R      
Sbjct: 116 SHSRYKIYIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKLPITILSRCQRFDF 175

Query: 180 LNFYEIEDLKTIVQR---GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                   L  IV R    A   G+ + D A   IA +  G+ R +     +V  F 
Sbjct: 176 KRV----PLIKIVGRLREIADQEGIVINDAALALIARKGDGSMRDSITCFDQVLAFC 228


>gi|167533167|ref|XP_001748264.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163773384|gb|EDQ87025.1| predicted protein [Monosiga brevicollis MX1]
          Length = 880

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 63/284 (22%), Positives = 98/284 (34%), Gaps = 37/284 (13%)

Query: 20  SLLR------PR-TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPG 64
           S +R      P+   E+  GQ E    L   +E    R +            +L  GPPG
Sbjct: 601 STMREIAIEVPQVRWEDIGGQTETKRQLIEAVEWPLKRRDDFARFGITPPRGILLYGPPG 660

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEIHR 116
             KT +A+ +A E G+NF +  GP +     G+    +     R       V+F DEI  
Sbjct: 661 CSKTLMAKALATESGLNFIAVKGPELFSKYVGESERAVRETFRRARAAAPCVVFFDEIDS 720

Query: 117 LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RF 174
           L     +      +     L+             L+  T++AAT R  L+ N L    RF
Sbjct: 721 LGGKRGKTGGGVGDRVLSQLLTELDGVT-----ALNNVTVLAATNRPDLVDNALLRPGRF 775

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
              I ++  +    + I+ R  +    A  D AA   A        +A  L+R     A 
Sbjct: 776 DRRIYVSPPDEAARQHILARQLQSVPHADIDVAALVDATAGLSGAEVAA-LIRSASMRAL 834

Query: 235 VAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
           V  A         AA++  A  +             +   + G 
Sbjct: 835 VRSADK------SAAVVSQADVEAALSDTARSITPAMLAFYDGY 872



 Score = 38.9 bits (89), Expect = 0.99,   Method: Composition-based stats.
 Identities = 35/111 (31%), Positives = 48/111 (43%), Gaps = 11/111 (9%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFR--STSGPVIAKAGDLAALLTNLEDR---- 106
               VL  GPPG GKT LA+ +AR  GV+      +G +   AG+    +T L D     
Sbjct: 332 PPTGVLMTGPPGTGKTLLARTLARACGVHVVLADVTGLISRVAGETEQRITALFDEARSK 391

Query: 107 --DVLFIDEIHRLSIIVEE---ILYPAMEDFQLDLMVGEGPSARSVKINLS 152
              ++FIDEI  L     +    L   +    L LM G      S +I L+
Sbjct: 392 APSLVFIDEIDALCPNRAQAASELDRRIVTMFLTLMDGLSARTTSCQIPLA 442


>gi|152991199|ref|YP_001356921.1| DNA polymerase III subunits gamma and tau [Nitratiruptor sp.
           SB155-2]
 gi|151423060|dbj|BAF70564.1| DNA polymerase III, gamma/tau subunits [Nitratiruptor sp. SB155-2]
          Length = 512

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 74/222 (33%), Gaps = 49/222 (22%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     RP+  E+  GQ      L+  ++      + L H  LF G  G GKT+ A++ +
Sbjct: 2   ALALKYRPKRFEDLIGQEAVTQTLQRALD-----TKNLSHAYLFSGLRGSGKTSTARIFS 56

Query: 76  RE------------------------LGVNFRSTSGPVIAKAGDLAALLTNLEDRD---- 107
           +                           ++          K  D+  L+ + + +     
Sbjct: 57  KALICDGGPTSSPCETCENCQAANEGRHIDIIEMDAASNRKIDDIRDLIEHTKYKPSSAR 116

Query: 108 --VLFIDEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLS-----RFTLIA 158
             +  IDE+H L+      L   +E+    +  ++      +     LS     RF  IA
Sbjct: 117 YKIFIIDEVHMLTKEAFNALLKTLEEPPEFVKFILATTDPLKLPATILSRTQHFRFKKIA 176

Query: 159 ATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
               V  L + L       +    YE E L+ + + G+    
Sbjct: 177 QRDIVHHLEHIL------NLENVEYEPEALQILARSGSGSLR 212


>gi|119944996|ref|YP_942676.1| cell division protein CDC48 [Psychromonas ingrahamii 37]
 gi|119863600|gb|ABM03077.1| cell division control protein 48 ATPase of AAA family CDC48
           subfamily [Psychromonas ingrahamii 37]
          Length = 732

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 40/163 (24%), Positives = 68/163 (41%), Gaps = 15/163 (9%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLED 105
           +A   VL  GPPG GKT +A+++A E   NF S SGP I           L  +      
Sbjct: 213 DAPKGVLIYGPPGCGKTLIARIIAHETEANFFSVSGPEIIHKFYGESEAHLRKIFEEAGR 272

Query: 106 R--DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
           +   ++FIDEI  ++   ++++    +      +V +  +      +     +IAAT   
Sbjct: 273 KGPSIIFIDEIDAIAPRRDQVVGEVEKR-----VVAQLLALMDGLNSRQNIIVIAATNLP 327

Query: 164 GLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVT 204
            LL   L+   RF   I +   + +    I++   +   LA  
Sbjct: 328 NLLDPALRRPGRFDREICIPIPDRDGRLQILEIHTRGMPLADD 370



 Score = 50.1 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 53/235 (22%), Positives = 79/235 (33%), Gaps = 31/235 (13%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
           + ++  G  +    L   IE      E            +L  GPPG+GKT +A+ VA E
Sbjct: 452 SWDDVGGLSDIKQQLIEAIEWPLKYPELFEQSGVRPPKGLLLCGPPGVGKTLIAKAVANE 511

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIV-EEILYPA 128
            GVN  S  GP +           +  +          ++F DEI  L  +         
Sbjct: 512 SGVNVISVKGPALISKYVGESERGVREVFHKARQAAPCIIFFDEIDALVPLRGSGGSDSH 571

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + D  L   + E         +L    +  AT R  L+   +    RF   + +   + E
Sbjct: 572 VADRVLSQFLAE----MDGIDDLKGVFIFGATNRRDLIDPAMLRPGRFDQIVNIPLPDTE 627

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGT--------PRIAGRLLRRVRDFA 233
               I     +   LA   EA       S  +         R A R +RRV D A
Sbjct: 628 GRTEIFAVHLRDKPLAEGIEAQNLAERTSGYSSAEIAALCNRSALRAIRRVVDTA 682


>gi|195354212|ref|XP_002043593.1| GM17358 [Drosophila sechellia]
 gi|194127761|gb|EDW49804.1| GM17358 [Drosophila sechellia]
          Length = 1004

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 78/235 (33%), Gaps = 37/235 (15%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           ++  G  +    +  FI  +  +      +L F GPPG+GKT++A+ +AR L   +   S
Sbjct: 512 DDHYGMEDIKKRILEFIAVSSLKGSTQGKILCFHGPPGVGKTSIAKSIARALNREYFRFS 571

Query: 87  GPVIAKAGDLAALLTNLE----------------DRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ ++    +        
Sbjct: 572 VGGMTDVAEIKGHRRTYVGAMPGKLIQCLKKTKIENPLVLIDEVDKIGKGYQGDPSSALL 631

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V ++LSR   I     +  +  PL+DR  +     +
Sbjct: 632 ELLDPEQNANFLD-------HYLDVPVDLSRVLFICTANVIDTIPEPLRDRMELIEMSGY 684

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
              E +       A+   +    +           +      L+R     + V +
Sbjct: 685 VAEEKIA-----IARQYLMPQAMKDCGLTDKHINISEDALNMLIRSYCRESGVRN 734


>gi|67484218|ref|XP_657329.1| cell division cycle protein 48 [Entamoeba histolytica HM-1:IMSS]
 gi|56474515|gb|EAL51880.1| cell division cycle protein 48, putative [Entamoeba histolytica
           HM-1:IMSS]
          Length = 794

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 49/182 (26%), Positives = 71/182 (39%), Gaps = 22/182 (12%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLED 105
           +    +L  GPPG GKT +A+ +A E G  F   +GP I          +L       E 
Sbjct: 224 KPPRGILLYGPPGCGKTMIARAIANETGAFFFLINGPEIMSKMAGESESNLRRAFEEAEK 283

Query: 106 RD--VLFIDEIHRLSIIVEEILYPAMEDFQLD--LMVGEGPSARSVKINLSRFTLIAATT 161
               ++FIDEI  ++    +     +E   +   L + +G  ARS  I      +IAAT 
Sbjct: 284 NSPAIIFIDEIDSIAPKR-DKSGGEVERRVVSQLLTLMDGLKARSQVI------VIAATN 336

Query: 162 RVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVT---DEAACEIAMRSR 216
           R   +   L+   RF   I L   + E  K I+Q   K   +A     D  A E      
Sbjct: 337 RPNTIDVALRRFGRFDREIDLGIPDTEGRKEILQIHTKKMKIADDVDLDVLANETHGMVG 396

Query: 217 GT 218
             
Sbjct: 397 AD 398



 Score = 49.3 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 45/193 (23%), Positives = 77/193 (39%), Gaps = 21/193 (10%)

Query: 28  EEFTGQVEACSNLKVFI-------EAAKARAEALD-HVLFVGPPGLGKTTLAQVVARELG 79
           E+  G  +  + LK  +       E  K   +     VLF GPPG GKT +A+ VA E  
Sbjct: 465 EDIGGLEQTKNELKEIVQWPVLHPELFKRYGQPPSRGVLFYGPPGCGKTMMAKAVANECQ 524

Query: 80  VNFRSTSGPVIAKA--GDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAMED 131
            NF S  GP +     G+  A + N+ D+       VLF DE+  ++           + 
Sbjct: 525 ANFISVKGPELLTMWFGESEANVRNIFDKARGAAPCVLFFDELDSIAQSRGSN---NGDS 581

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
              D ++ +  +      +     +I AT R  ++   L    R    I +   ++E   
Sbjct: 582 GVSDRVINQLLTEMDGMSSAKTVFIIGATNRPDIIDPALTRPGRLDQLIYIPLPDLEARV 641

Query: 190 TIVQRGAKLTGLA 202
            ++Q   + + +A
Sbjct: 642 GVLQANLRKSPVA 654


>gi|297803640|ref|XP_002869704.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297315540|gb|EFH45963.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 818

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 46/238 (19%), Positives = 84/238 (35%), Gaps = 26/238 (10%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
            +LSR++SQ+       RP++ +E  GQ      L   I     R       LF GP G 
Sbjct: 238 EVLSRSLSQK------FRPKSFDELVGQEVVVKCLLSTI----LRGRITSVYLFHGPRGT 287

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSII 120
           GKT+ +++ A  L    ++          +  +  +    RDV+  D         L  +
Sbjct: 288 GKTSTSKIFAAALNCLSQAAHSRPCGLCSECKSYFSG-RGRDVMETDSGKLNRPSYLRSL 346

Query: 121 VEEILYPAMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           ++    P +       ++ E         G    S+         I  T+ +  L   + 
Sbjct: 347 IKNASLPPVTSRFKVFIIDECQLLCQETWGTLLNSLDNFSQHSVFILVTSELEKLPRNVL 406

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
            R          + + + T + +     G+     A   IA +S G+ R A  +L ++
Sbjct: 407 SRSQKYHFSKVCDAD-ISTKLAKICVEEGIDFDQGAVDFIASKSDGSLRDAEIMLDQL 463


>gi|195591571|ref|XP_002085513.1| GD12266 [Drosophila simulans]
 gi|194197522|gb|EDX11098.1| GD12266 [Drosophila simulans]
          Length = 1004

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 78/235 (33%), Gaps = 37/235 (15%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           ++  G  +    +  FI  +  +      +L F GPPG+GKT++A+ +AR L   +   S
Sbjct: 512 DDHYGMEDIKKRILEFIAVSSLKGSTQGKILCFHGPPGVGKTSIAKSIARALNREYFRFS 571

Query: 87  GPVIAKAGDLAALLTNLE----------------DRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ ++    +        
Sbjct: 572 VGGMTDVAEIKGHRRTYVGAMPGKLIQCLKKTKIENPLVLIDEVDKIGKGYQGDPSSALL 631

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V ++LSR   I     +  +  PL+DR  +     +
Sbjct: 632 ELLDPEQNANFLD-------HYLDVPVDLSRVLFICTANVIDTIPEPLRDRMELIEMSGY 684

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
              E +       A+   +    +           +      L+R     + V +
Sbjct: 685 VAEEKIA-----IARQYLMPQAMKDCGLTDKHINISEDALNMLIRSYCRESGVRN 734


>gi|194874213|ref|XP_001973361.1| GG13389 [Drosophila erecta]
 gi|190655144|gb|EDV52387.1| GG13389 [Drosophila erecta]
          Length = 1007

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 79/235 (33%), Gaps = 37/235 (15%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           ++  G  +    +  FI  +  +      +L F GPPG+GKT++A+ +AR L   +   S
Sbjct: 515 DDHYGMEDIKKRILEFIAVSSLKGSTQGKILCFHGPPGVGKTSIAKSIARALNREYFRFS 574

Query: 87  GPVIAKAGDLAALLTNLE----------------DRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ ++    +        
Sbjct: 575 VGGMTDVAEIKGHRRTYVGAMPGKLIQCLKKTKIENPLVLIDEVDKIGKGYQGDPSSALL 634

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V ++LSR   I     +  +  PL+DR  +     +
Sbjct: 635 ELLDPEQNANFLD-------HYLDVPVDLSRVLFICTANVIDTIPEPLRDRMELIEMSGY 687

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
              E +       A+   +    +       +   +      L+R     + V +
Sbjct: 688 VAEEKIA-----IARQYLMPQAMKDCGLTDKQINISEDALNMLIRSYCRESGVRN 737


>gi|158320208|ref|YP_001512715.1| ATP-dependent metalloprotease FtsH [Alkaliphilus oremlandii OhILAs]
 gi|158140407|gb|ABW18719.1| ATP-dependent metalloprotease FtsH [Alkaliphilus oremlandii OhILAs]
          Length = 587

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 54/241 (22%), Positives = 92/241 (38%), Gaps = 16/241 (6%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA------KAGDLAALLT 101
           K  A     ++  GPPG GKT +A+ +A E GV+F + SG           AG + +L  
Sbjct: 181 KYGARMPKGIILYGPPGTGKTLMAKALASEAGVDFLAVSGSDFVQVYAGLGAGRIRSLFK 240

Query: 102 NLED--RDVLFIDEIHRLSIIVE--EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLI 157
           N ++  + V+FIDEI  +    +   I      D  L+ ++ E    +  +       +I
Sbjct: 241 NAKEKGKCVVFIDEIDAIGKKRDRGNIGGSDESDRTLNALLTEMSGFKGSEG----IVVI 296

Query: 158 AATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRS 215
           AAT R+  L   L    RF   I +   ++     I++  +K   +  T           
Sbjct: 297 AATNRLDTLDEALLRPGRFDRQIEIGLPDLNARYEILKLYSKNRPIGETLNLRAFAEQTV 356

Query: 216 RGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNF 275
             +      L+      A   +A  IT +  D A   +       D+ ++R L      +
Sbjct: 357 YFSGAKLENLMNEAAINAARENADAITEKHMDRAFYTVIAGDEKKDRSNIRSLDRKITAY 416

Query: 276 G 276
            
Sbjct: 417 H 417


>gi|323476351|gb|ADX81589.1| AAA ATPase, CDC48 subfamily [Sulfolobus islandicus HVE10/4]
          Length = 606

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 56/251 (22%), Positives = 87/251 (34%), Gaps = 26/251 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIE--------AAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           T  +  G  +A   +K +IE        A K   +    +L  GPPG GKT + + +A E
Sbjct: 59  TWNDIGGYEDAKKEIKEYIELPLKNRDVAMKYGLKPPKGMLLFGPPGCGKTMMMRALANE 118

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
             +NF   +   I           L  L  N       +LF DEI  + +  E     ++
Sbjct: 119 SKLNFLYVNISDIMSKWYGESEARLRELFNNARKNSPCILFFDEIDTIGVKRESHTGDSV 178

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
               L LM+ E     S         ++ +T    +L   L    RF   I +     E 
Sbjct: 179 TPRLLSLMLSEIDGLHSEDG----VIVVGSTNVPQMLDKALLRAGRFDKLIYIGPPNKEA 234

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            K I+Q   K   LA       +    +  T R +G  L  +   A    A     + AD
Sbjct: 235 RKQILQIHCKGKPLAED----VDFDKLAEITERYSGADLANLCQEAARKVASEAIEKGAD 290

Query: 248 AALLRLAIDKM 258
             +      ++
Sbjct: 291 RKITMADFIEL 301



 Score = 52.4 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 83/234 (35%), Gaps = 28/234 (11%)

Query: 35  EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI---- 90
           +    LKV           +  +L  GPPG+GKT +A+ +A+ L V   + SG  I    
Sbjct: 368 KLLEQLKV---------PPIRGILLYGPPGVGKTMMAKALAKTLNVKLIALSGAEIMYKG 418

Query: 91  --AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARS 146
                  +  +     +    ++ +DE+  ++       Y A     ++ ++ E    RS
Sbjct: 419 YEGAIAAIKEVFNRARENKPAIVLLDELDAIASKRNYKSY-ADSSKIVNQLLTEMDGIRS 477

Query: 147 VKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVT 204
               L    +I  T R+  +   L    RF   I +     E+   I+ +          
Sbjct: 478 ----LKEVVVIGTTNRLKAIDPALLRPGRFDKIIHMPLPNREERLDILMKYIGKEECEKV 533

Query: 205 DEA--ACEIAMRSRGTPRIAGR--LLRRVRDFAEVAHAKTITREIADAALLRLA 254
           D    A +    S        R   ++ ++        +T+T+E    AL ++ 
Sbjct: 534 DCEILAEQTEGYSGADLSALAREAKMKMLKSILRGESNRTLTKEDLIDALNKIH 587


>gi|311065082|ref|YP_003971808.1| DNA polymerase III subunit gamma/tau [Bifidobacterium bifidum
           PRL2010]
 gi|310867402|gb|ADP36771.1| DnaX DNA polymerase III subunit gamma/tau [Bifidobacterium bifidum
           PRL2010]
          Length = 952

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 56/260 (21%), Positives = 88/260 (33%), Gaps = 27/260 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     RP T E   GQ +    L   +++ K     L H  LF GP G GKT+ A+++A
Sbjct: 4   ALYRRYRPDTFEGVIGQDQVTVPLMRALDSGK-----LTHAYLFSGPRGCGKTSSARILA 58

Query: 76  RELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------P 127
           R +      TS P    A   DLA         DV+ ID      +     L       P
Sbjct: 59  RCINCAKGPTSHPCGECASCKDLA--TGGPGSIDVVEIDAASHNGVDDARELRERAGFAP 116

Query: 128 AMEDFQLDLMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR---FGI 176
           A + +++ ++         G     + V+        I ATT    +   ++ R   +  
Sbjct: 117 ARDRYKIFILDEAHMVTQQGFNALLKIVEEPPDHVMFIFATTEPDKVIGTIRSRTHHYPF 176

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
            +         L+ I  + +      V   A        R T  +  +L+    D     
Sbjct: 177 RLVPQEVMGPYLEEICAKESIKPEPGVLKLAMRAGGGSVRDTLSVLDQLMVGAVDGVIAH 236

Query: 237 HAKTITREIADAALLRLAID 256
            A          AL+  A+D
Sbjct: 237 DAAVALLGFTPEALIGEAVD 256


>gi|195496197|ref|XP_002095591.1| GE22482 [Drosophila yakuba]
 gi|194181692|gb|EDW95303.1| GE22482 [Drosophila yakuba]
          Length = 1001

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 79/235 (33%), Gaps = 37/235 (15%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           ++  G  +    +  FI  +  +      +L F GPPG+GKT++A+ +AR L   +   S
Sbjct: 509 DDHYGMEDIKKRILEFIAVSSLKGSTQGKILCFHGPPGVGKTSIAKSIARALNREYFRFS 568

Query: 87  GPVIAKAGDLAALLTNLE----------------DRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ ++    +        
Sbjct: 569 VGGMTDVAEIKGHRRTYVGAMPGKLIQCLKKTKIENPLVLIDEVDKIGKGYQGDPSSALL 628

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V ++LSR   I     +  +  PL+DR  +     +
Sbjct: 629 ELLDPEQNANFLD-------HYLDVPVDLSRVLFICTANVIDTIPEPLRDRMELIEMSGY 681

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
              E +       A+   +    +       +   +      L+R     + V +
Sbjct: 682 VAEEKIA-----IARQYLMPQAMKDCGLTDKQINISEDALNMLIRSYCRESGVRN 731


>gi|221067924|ref|ZP_03544029.1| DNA polymerase III, subunits gamma and tau [Comamonas testosteroni
           KF-1]
 gi|220712947|gb|EED68315.1| DNA polymerase III, subunits gamma and tau [Comamonas testosteroni
           KF-1]
          Length = 723

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 44/270 (16%), Positives = 76/270 (28%), Gaps = 68/270 (25%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARE 77
               RPRT  E  GQ      L   +       + L H  LF G  G+GKTT+++++A+ 
Sbjct: 7   ARKYRPRTFTEMVGQEHVVQALTNALT-----QQRLHHAYLFTGTRGVGKTTVSRILAKS 61

Query: 78  LGVNFRSTSGPVI-----------------------------AKAGDLAALLTNL----- 103
           L       +G +                                  ++ +LL        
Sbjct: 62  LNCQGLDGNGGITATPCGVCAACTEIDSGRFPDYTELDAASNRGVDEVQSLLEQAVYKPV 121

Query: 104 -EDRDVLFIDEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAAT 160
                V  IDE+H L+      +   +E+    L  ++      +     LSR       
Sbjct: 122 QGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNLR 181

Query: 161 TRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPR 220
                                    E +   +        +    +A   ++  +RG+ R
Sbjct: 182 PMA---------------------PETVLEHLTHVLDKESVPAEPQALRLLSRAARGSMR 220

Query: 221 IAGRLLRRVRDFAEVAHAKTITREIADAAL 250
            A  L     D A    +  +        L
Sbjct: 221 DALSL----TDQAIAFGSGQLQEATVRQML 246


>gi|42520868|ref|NP_966783.1| DNA polymerase III, gamma and tau subunits [Wolbachia endosymbiont
           of Drosophila melanogaster]
 gi|42410608|gb|AAS14717.1| DNA polymerase III, gamma and tau subunits [Wolbachia endosymbiont
           of Drosophila melanogaster]
          Length = 533

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 82/227 (36%), Gaps = 25/227 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP + ++  GQ          +E A    +    +L  G  G+GKTT A+++A  L  + 
Sbjct: 8   RPSSFKDLVGQDILV----RVLENAFILNKIPQSILLSGSSGVGKTTTARIIALCLNCS- 62

Query: 83  RSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEIL-----YPAMEDFQLD 135
               GP+    G     L   N    DV+ ID     SI   +++     Y  +      
Sbjct: 63  ---LGPIFEPCGSCENCLAIKNSSHPDVIEIDAASHTSIDDIKVILGDICYSPISSKFKV 119

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             ++++   S    I ATT +  +   +  R      L+   + 
Sbjct: 120 YIIDEVHMLSSSAFNALLKTLEEPPSSVKFILATTEIKKIPITIIARCQ-RFDLHNIPVA 178

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
            +   +   A+    ++   A   IA  S  + R A  L+ +   ++
Sbjct: 179 KIVERLNDVAQKESYSIEKGALELIARHSGNSMRNALFLMNQAVLYS 225


>gi|76801540|ref|YP_326548.1| replication factor C large subunit [Natronomonas pharaonis DSM
           2160]
 gi|83288435|sp|Q3ISA5|RFCL_NATPD RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|76557405|emb|CAI48982.1| replication factor C large subunit [Natronomonas pharaonis DSM
           2160]
          Length = 483

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 45/251 (17%), Positives = 81/251 (32%), Gaps = 33/251 (13%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
                RP TL E  G  +A    + + +A +   EA   V+  G PG+GKT+ A  +A +
Sbjct: 4   WTEAYRPTTLSEVRGNNKARDAFEEWAKAWEDHREA---VILHGSPGVGKTSAAHALAND 60

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAME 130
           +G      +        ++                R ++ +DE   L    +        
Sbjct: 61  MGWPVLEMNASDARTKDEIERFAGRAASNATLGGGRQLIILDEADNLHQHKDRG------ 114

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
                   G     R VK       LIA       +++ L+         +      +  
Sbjct: 115 --------GAAAMTRLVKDATQPVVLIA--NDYYEMSSGLRSACRDVEFRDV-SARSIVP 163

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           +++   +   +   ++   EIA  +RG  R A      V+D         I  E ++ + 
Sbjct: 164 VLRDICRQENVEFDEDVLQEIAEANRGDLRGA------VKDLQARERDGEIKPEGSEGSR 217

Query: 251 LRLAIDKMGFD 261
            R        D
Sbjct: 218 DRTEDIFAFLD 228


>gi|307205986|gb|EFN84112.1| Replication factor C subunit 4 [Harpegnathos saltator]
          Length = 360

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 49/267 (18%), Positives = 83/267 (31%), Gaps = 49/267 (18%)

Query: 9   SRNVSQED-----ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
           S + S+ED       +   RP+++++   Q E  +     I  A    +   ++LF GPP
Sbjct: 20  STSRSKEDKKDLTPWVEKYRPKSVDDIVEQTEVVN----VIRQAMEHGD-FPNMLFYGPP 74

Query: 64  GLGKTTLAQVVAR------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD---- 107
           G GKT++    AR            EL  +       V  K    A    N    D    
Sbjct: 75  GTGKTSIIHAAARQMFGSIYRDRILELNASDDRGIQVVRDKIKSFALRRANPTRPDGKKC 134

Query: 108 ----VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
               ++ +DE   ++   +  L   ME             A S +  L           +
Sbjct: 135 PPFKIIILDEADSMTGAAQTALRRIMEK-----------EAHSTRFCL-------VCNYL 176

Query: 164 GLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAG 223
             +  P+  R     R      E     ++       L        +I   S G  R A 
Sbjct: 177 SRIIKPITSRC-TKFRFKPLSDEKSIARLEYICNEENLMANRNVLEKIVAASGGDLRQAV 235

Query: 224 RLLRRVRDFAEVAHAKTITREIADAAL 250
             L+ +     + +  T+   +    L
Sbjct: 236 MCLQSITRLKGIEYEITVDDALDVIGL 262


>gi|239623040|ref|ZP_04666071.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239522407|gb|EEQ62273.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 549

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 82/225 (36%), Gaps = 23/225 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP + E+  GQ      LK  I +     E + H  LF G  G GKT++A++ AR +   
Sbjct: 11  RPVSFEDVKGQDPIVQTLKNQITS-----ERIGHAYLFCGTRGTGKTSIAKIFARAVNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDL 136
                 P           + +    +V+ ID      +  +  I +++ YP  E      
Sbjct: 66  HPVDGSPCNECP--TCKAIQSGSSMNVVEIDAASNNGVENIRDIRDQVQYPPTEGRYRVY 123

Query: 137 MVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ++ E             ++++   S    I ATT V  +   +  R           +E 
Sbjct: 124 IIDEVHMLSIGAFNALLKTLEEPPSYVIFILATTEVHKIPITILSRCQRYDFKRI-SLET 182

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           +   ++   +   + V D A   IA  + G+ R    LL +   F
Sbjct: 183 IGDRLRELTQAEHIEVEDRALMYIAKAADGSLRDGLSLLDQCVAF 227


>gi|168217957|ref|ZP_02643582.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens NCTC
           8239]
 gi|182380014|gb|EDT77493.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens NCTC
           8239]
          Length = 717

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 68/265 (25%), Positives = 106/265 (40%), Gaps = 39/265 (14%)

Query: 26  TLEEFTGQVEACSNL----------KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           T ++  GQ EA  +L          + ++E     A+     L VGPPG GKT LA+ VA
Sbjct: 164 TFKDVAGQDEAKESLVEIVDFLHDTRKYVEIG---AKLPKGALLVGPPGTGKTLLAKAVA 220

Query: 76  RELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYP 127
            E  V F S SG       V   A  +  L    E++   ++FIDEI  +    +  +  
Sbjct: 221 GEAKVPFFSMSGSDFVEMFVGMGAARVRDLFKQAEEKAPCIVFIDEIDAIGKSRDGAIQG 280

Query: 128 AME-DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ-----DRFGIPIRLN 181
             E +  L+ ++ E     S K       ++AAT R  +L   L      DR  I  R +
Sbjct: 281 NDEREQTLNQLLTEMDGFDSSKG----VVILAATNRPEVLDKALLRPGRFDRRIIVDRPD 336

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
               E++  +  R  KL      D +  EIA   + TP   G  L  + + A +   K  
Sbjct: 337 LIGREEILKVHSRDVKL----SDDVSLEEIA---KSTPGAVGADLANIVNEAALRAVKHG 389

Query: 242 TREIADAALLR-LAIDKMGFDQLDL 265
            + +    L   + +   G ++ D 
Sbjct: 390 RKFVIQEDLDEAVEVIIAGQEKRDR 414


>gi|114771182|ref|ZP_01448602.1| ATP-dependent metalloprotease FtsH [alpha proteobacterium HTCC2255]
 gi|114548107|gb|EAU50994.1| ATP-dependent metalloprotease FtsH [alpha proteobacterium HTCC2255]
          Length = 639

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 53/252 (21%), Positives = 96/252 (38%), Gaps = 27/252 (10%)

Query: 25  RTLEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +T ++  G  EA   L+  +E        ++   +     L +GPPG GKT LA+ +A E
Sbjct: 155 KTFDDVAGIDEAKEELEEIVEFLRDPQKFSRLGGQIPKGALLIGPPGTGKTLLARAIAGE 214

Query: 78  LGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
            GV F + SG       V   A  +  +    +     ++FIDEI  +            
Sbjct: 215 AGVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKNAPCIVFIDEIDAVGRHRGAGHGGGN 274

Query: 130 EDFQLD----LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183
           ++ +      L+  +G SA    I L      AAT R  +L   L+   RF   +++   
Sbjct: 275 DEREQTLNQLLVEMDGFSANEGVILL------AATNRPDVLDPALKRPGRFDRQVQVPNP 328

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           +I+  + I+   A+ + L    +           +      L+      A     + +T 
Sbjct: 329 DIKGREKILNVHARKSPLGPDVDLRIIARGTPGFSGADLANLVNEAALTAARTGKRFVTM 388

Query: 244 EIADAALLRLAI 255
           E  + A  ++ +
Sbjct: 389 EDFEFAKDKVMM 400


>gi|185178797|ref|ZP_02964592.1| ATP-dependent metalloprotease FtsH [Ureaplasma urealyticum serovar
           5 str. ATCC 27817]
 gi|188518696|ref|ZP_03004123.1| ATP-dependent metalloprotease FtsH [Ureaplasma urealyticum serovar
           11 str. ATCC 33695]
 gi|225551274|ref|ZP_03772220.1| ATP-dependent metalloprotease FtsH [Ureaplasma urealyticum serovar
           8 str. ATCC 27618]
 gi|184209420|gb|EDU06463.1| ATP-dependent metalloprotease FtsH [Ureaplasma urealyticum serovar
           5 str. ATCC 27817]
 gi|188997682|gb|EDU66779.1| ATP-dependent metalloprotease FtsH [Ureaplasma urealyticum serovar
           11 str. ATCC 33695]
 gi|225379089|gb|EEH01454.1| ATP-dependent metalloprotease FtsH [Ureaplasma urealyticum serovar
           8 str. ATCC 27618]
          Length = 721

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 60/266 (22%), Positives = 92/266 (34%), Gaps = 30/266 (11%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAK-------ARAEALDH 56
            + LL  N        S +R     +  G  E    L   ++  K       A A     
Sbjct: 218 SDSLLGTNKGNAKLTKSSVR---FSDVAGIAEVKEELIEIVDFLKEPKKYVAAGARIPKG 274

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA------KAGDLAALLTNLEDR--DV 108
           V+  GPPG GKT +A+ VA E  V F  T+G           A  +  L          +
Sbjct: 275 VMLYGPPGTGKTLIAKAVAGEANVPFFQTTGSSFEDTFVGVGARRVRELFEKARKSAPAI 334

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +FIDEI  ++         A++D  ++ ++ E     +     S   ++AAT R+  L +
Sbjct: 335 IFIDEIDSVAKKR-GNSLTAVQDQTINQLLSELDGFDTS----SGVIVMAATNRLDTLDD 389

Query: 169 PLQ-----DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAG 223
            +      DR       +  E E +  I  R   L+     ++ A   A  S        
Sbjct: 390 AILRPGRFDRQISVNLPDILEREQILRIHSRNKNLSAKVSLEDIARRTAGFSGAQLENVL 449

Query: 224 R--LLRRVRDFAEVAHAKTITREIAD 247
               L  VRD A   H   +   I  
Sbjct: 450 NEAALLSVRDKATSIHMNHLDEAIDR 475


>gi|322492871|emb|CBZ28150.1| putative replication factor C, subunit 4 [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 360

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 51/312 (16%), Positives = 94/312 (30%), Gaps = 77/312 (24%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+T+ +  G  EA S L+V      A+   L ++L  GPPG GKTT    +AR
Sbjct: 7   PWVEKYRPQTVADIVGNTEAISRLQVI-----AKEGNLPNLLLCGPPGTGKTTSMLCLAR 61

Query: 77  -----------------------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDR- 106
                                        EL  +       V  K    A     L  + 
Sbjct: 62  DLLLQSTDAGSAGASPGGATKDILKDAVLELNASDDRGLDVVREKIKLFAQTKKTLPKKF 121

Query: 107 -----------------DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKI 149
                             ++ +DE   ++   ++ L                   R++++
Sbjct: 122 FSTGEGVAKDDHVVHLHKIVLLDEADSMTPAAQQALR------------------RTMEL 163

Query: 150 NLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAAC 209
           + S      A      +  P+Q R  +       + + LK +V    +   ++ TD+   
Sbjct: 164 HSSTTRFAFACNNSSKIIEPIQSRCAVVRFKKLSDADILKRLV-YVIQQENVSYTDDGLE 222

Query: 210 EIAMRSRGTPRIAGRLLRRVRD-FAEVAHAKTITREIADAALLRLAID-----KMGFDQL 263
            +   + G  R A   L+     +  V              LL   +      K   ++ 
Sbjct: 223 ALLYLAEGDLRQALNALQATHTGYGLVNADNVFKVCDQPHPLLVENVITACVMKRNIEEA 282

Query: 264 DLRYLTMIARNF 275
                 ++ R +
Sbjct: 283 HREMNRLLNRGY 294


>gi|227829261|ref|YP_002831040.1| Microtubule-severing ATPase [Sulfolobus islandicus L.S.2.15]
 gi|229578032|ref|YP_002836430.1| Microtubule-severing ATPase [Sulfolobus islandicus Y.G.57.14]
 gi|284996617|ref|YP_003418384.1| Vesicle-fusing ATPase [Sulfolobus islandicus L.D.8.5]
 gi|227455708|gb|ACP34395.1| Microtubule-severing ATPase [Sulfolobus islandicus L.S.2.15]
 gi|228008746|gb|ACP44508.1| Microtubule-severing ATPase [Sulfolobus islandicus Y.G.57.14]
 gi|284444512|gb|ADB86014.1| Vesicle-fusing ATPase [Sulfolobus islandicus L.D.8.5]
          Length = 606

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 56/251 (22%), Positives = 87/251 (34%), Gaps = 26/251 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIE--------AAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           T  +  G  +A   +K +IE        A K   +    +L  GPPG GKT + + +A E
Sbjct: 59  TWNDIGGYEDAKKEIKEYIELPLKNRDIAMKYGLKPPKGMLLFGPPGCGKTMMMRALANE 118

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
             +NF   +   I           L  L  N       +LF DEI  + +  E     ++
Sbjct: 119 SKLNFLYVNISDIMSKWYGESEARLRELFNNARKNSPCILFFDEIDTIGVKRESHTGDSV 178

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
               L LM+ E     S         ++ +T    +L   L    RF   I +     E 
Sbjct: 179 TPRLLSLMLSEIDGLHSEDG----VIVVGSTNVPQMLDKALLRAGRFDKLIYIGPPNKEA 234

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            K I+Q   K   LA       +    +  T R +G  L  +   A    A     + AD
Sbjct: 235 RKQILQIHCKGKPLAED----VDFDKLAEITERYSGADLANLCQEAARKVASEAIEKGAD 290

Query: 248 AALLRLAIDKM 258
             +      ++
Sbjct: 291 RKITMADFIEL 301



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 78/234 (33%), Gaps = 28/234 (11%)

Query: 35  EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI---- 90
           +    LKV           +  +L  GPPG+GKT +A+ +A+ L V   + SG  I    
Sbjct: 368 KLLEQLKV---------PPIRGILLYGPPGVGKTMMAKALAKTLNVKLIALSGAEIMYKG 418

Query: 91  --AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARS 146
                  +  +     +    ++ +DE+  ++       Y         L+         
Sbjct: 419 YEGAIAAIKEVFNRARENKPAIVLLDELDAIASKRNYKSYTDSSRIVNQLLTE-----MD 473

Query: 147 VKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVT 204
              +L    +I  T R+  +   L    RF   I +     E+   I+ +          
Sbjct: 474 GIRSLKEVVVIGTTNRLKAIDPALLRPGRFDKIIHMPLPNREERLDILMKYIGKEECEKV 533

Query: 205 DEA--ACEIAMRSRGTPRIAGR--LLRRVRDFAEVAHAKTITREIADAALLRLA 254
           D    A +    S        R   ++ ++        +T+T+E    AL ++ 
Sbjct: 534 DCGILAEQTEGYSGADLSALAREAKMKVLKSILRGESNRTLTKEDLIDALNKIH 587


>gi|224283524|ref|ZP_03646846.1| DNA polymerase III subunits gamma and tau [Bifidobacterium bifidum
           NCIMB 41171]
 gi|313140680|ref|ZP_07802873.1| DNA polymerase III [Bifidobacterium bifidum NCIMB 41171]
 gi|313133190|gb|EFR50807.1| DNA polymerase III [Bifidobacterium bifidum NCIMB 41171]
          Length = 954

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 56/260 (21%), Positives = 88/260 (33%), Gaps = 27/260 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     RP T E   GQ +    L   +++ K     L H  LF GP G GKT+ A+++A
Sbjct: 4   ALYRRYRPDTFEGVIGQDQVTVPLMRALDSGK-----LTHAYLFSGPRGCGKTSSARILA 58

Query: 76  RELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------P 127
           R +      TS P    A   DLA         DV+ ID      +     L       P
Sbjct: 59  RCINCAKGPTSHPCGECASCKDLA--TGGPGSIDVVEIDAASHNGVDDARELRERAGFAP 116

Query: 128 AMEDFQLDLMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR---FGI 176
           A + +++ ++         G     + V+        I ATT    +   ++ R   +  
Sbjct: 117 ARDRYKIFILDEAHMVTQQGFNALLKIVEEPPDHVMFIFATTEPDKVIGTIRSRTHHYPF 176

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
            +         L+ I  + +      V   A        R T  +  +L+    D     
Sbjct: 177 RLVPQEVMGPYLEEICAKESIKPEPGVLKLAMRAGGGSVRDTLSVLDQLMVGAVDGVIAH 236

Query: 237 HAKTITREIADAALLRLAID 256
            A          AL+  A+D
Sbjct: 237 DAAVALLGFTPEALIGEAVD 256


>gi|221513036|ref|NP_730435.2| CG8798, isoform C [Drosophila melanogaster]
 gi|300681032|sp|Q7KUT2|LONM_DROME RecName: Full=Lon protease homolog, mitochondrial; Flags: Precursor
 gi|220902655|gb|AAN11654.2| CG8798, isoform C [Drosophila melanogaster]
 gi|257471048|gb|ACV53872.1| RE61687p [Drosophila melanogaster]
          Length = 1024

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 78/235 (33%), Gaps = 37/235 (15%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           ++  G  +    +  FI  +  +      +L F GPPG+GKT++A+ +AR L   +   S
Sbjct: 530 DDHYGMEDIKKRILEFIAVSSLKGSTQGKILCFHGPPGVGKTSIAKSIARALNREYFRFS 589

Query: 87  GPVIAKAGDLAALLTNLE----------------DRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ ++    +        
Sbjct: 590 VGGMTDVAEIKGHRRTYVGAMPGKLIQCLKKTKIENPLVLIDEVDKIGKGYQGDPSSALL 649

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V ++LSR   I     +  +  PL+DR  +     +
Sbjct: 650 ELLDPEQNANFLD-------HYLDVPVDLSRVLFICTANVIDTIPEPLRDRMELIEMSGY 702

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
              E +       A+   +    +           +      L+R     + V +
Sbjct: 703 VAEEKIA-----IARQYLMPQAMKDCGLTDKHINISEDALNMLIRSYCRESGVRN 752


>gi|242011026|ref|XP_002426258.1| predicted protein [Pediculus humanus corporis]
 gi|212510321|gb|EEB13520.1| predicted protein [Pediculus humanus corporis]
          Length = 901

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 82/235 (34%), Gaps = 37/235 (15%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI  ++ +      +L F GPPG+GKT++A+ +AR L   +   S
Sbjct: 443 EDHYGMEDVKKRVLEFIAVSQLKGSTQGKILCFFGPPGVGKTSIARSIARALNREYFRFS 502

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ ++    +        
Sbjct: 503 VGGMTDVAEIKGHRRTYVGAMPGKVIQCLKKTKTENPLILIDEVDKIGKGYQGDPSSALL 562

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD  +        V ++LS+   I     V  +  PL+DR  +     +
Sbjct: 563 EMLDPEQNFNFLDHYL-------DVPVDLSKVLFICTANVVETIPEPLRDRMEMIDVSGY 615

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
              E L       AK   +    + A     + +        L++     + V +
Sbjct: 616 VAEEKLA-----IAKQYLVPQAMKDAGLKTEQLKIHDDSLTTLIKNYCRESGVRN 665


>gi|182625752|ref|ZP_02953520.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens D str.
           JGS1721]
 gi|177909014|gb|EDT71496.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens D str.
           JGS1721]
          Length = 717

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 68/265 (25%), Positives = 106/265 (40%), Gaps = 39/265 (14%)

Query: 26  TLEEFTGQVEACSNL----------KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           T ++  GQ EA  +L          + ++E     A+     L VGPPG GKT LA+ VA
Sbjct: 164 TFKDVAGQDEAKESLVEIVDFLHDTRKYVEIG---AKLPKGALLVGPPGTGKTLLAKAVA 220

Query: 76  RELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYP 127
            E  V F S SG       V   A  +  L    E++   ++FIDEI  +    +  +  
Sbjct: 221 GEAKVPFFSMSGSDFVEMFVGMGAARVRDLFKQAEEKAPCIVFIDEIDAIGKSRDGAIQG 280

Query: 128 AME-DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ-----DRFGIPIRLN 181
             E +  L+ ++ E     S K       ++AAT R  +L   L      DR  I  R +
Sbjct: 281 NDEREQTLNQLLTEMDGFDSSKG----VVILAATNRPEVLDKALLRPGRFDRRIIVDRPD 336

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
               E++  +  R  KL      D +  EIA   + TP   G  L  + + A +   K  
Sbjct: 337 LIGREEILKVHSRDVKL----SDDVSLEEIA---KSTPGAVGADLANIVNEAALRAVKHG 389

Query: 242 TREIADAALLR-LAIDKMGFDQLDL 265
            + +    L   + +   G ++ D 
Sbjct: 390 RKFVIQEDLDEAVEVIIAGQEKRDR 414


>gi|195345297|ref|XP_002039206.1| GM22851 [Drosophila sechellia]
 gi|194134432|gb|EDW55948.1| GM22851 [Drosophila sechellia]
          Length = 326

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 49/134 (36%), Gaps = 25/134 (18%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RPR +++   Q E  + L+  +E        L ++L  GPPG GKT+     +R
Sbjct: 31  PWVEKYRPRNVDDVVEQSEVVAVLRKCVE-----GGDLPNMLLYGPPGTGKTSTILAASR 85

Query: 77  ------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD--------VLFIDEIHR 116
                       EL  +       V  K  + + +  +    D        ++ +DE   
Sbjct: 86  QIFGDMFKDRILELNASDERGINVVRTKIKNFSQISASSVRPDGKPCPPFKIIILDEADS 145

Query: 117 LSIIVEEILYPAME 130
           ++   +  L   ME
Sbjct: 146 MTHAAQSALRRTME 159


>gi|310288215|ref|YP_003939474.1| DNA polymerase III subunit gamma/tau [Bifidobacterium bifidum S17]
 gi|309252152|gb|ADO53900.1| DNA polymerase III subunit gamma/tau [Bifidobacterium bifidum S17]
          Length = 952

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 53/262 (20%), Positives = 87/262 (33%), Gaps = 31/262 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     RP T E   GQ +    L   +++ K     L H  LF GP G GKT+ A+++A
Sbjct: 4   ALYRRYRPDTFEGVIGQDQVTVPLMRALDSGK-----LTHAYLFSGPRGCGKTSSARILA 58

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDR----DVLFIDEIHRLSIIVEEILY----- 126
           R +        GP     G+ A+            DV+ ID      +     L      
Sbjct: 59  RCINC----VKGPTSHPCGECASCKDLATGGPGSIDVVEIDAASHNGVDDARELRERAGF 114

Query: 127 -PAMEDFQLDLMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR---F 174
            PA + +++ ++         G     + V+        I ATT    +   ++ R   +
Sbjct: 115 APARDRYKIFILDEAHMVTQQGFNALLKIVEEPPDHVMFIFATTEPDKVIGTIRSRTHHY 174

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
              +         L+ I  + +      V   A        R T  +  +L+    D   
Sbjct: 175 PFRLVPQEVMGPYLEEICAKESIKPEPGVLKLAMRAGGGSVRDTLSVLDQLMVGAVDGVI 234

Query: 235 VAHAKTITREIADAALLRLAID 256
              A          AL+  A+D
Sbjct: 235 AHDAAVALLGFTPEALIGEAVD 256


>gi|303388207|ref|XP_003072338.1| Cdc48-like AAA ATPase [Encephalitozoon intestinalis ATCC 50506]
 gi|303301477|gb|ADM10978.1| Cdc48-like AAA ATPase [Encephalitozoon intestinalis ATCC 50506]
          Length = 780

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/169 (24%), Positives = 64/169 (37%), Gaps = 17/169 (10%)

Query: 47  AKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALL 100
           +K   +    +L  GPPG GKT +A+ +A E G      +GP I          +L    
Sbjct: 235 SKIGVKPPKGILLYGPPGTGKTLIARAIANETGAFLFLINGPEIMSKMAGESESNLRKAF 294

Query: 101 TNLEDR--DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV-GEGPSARSVKINLSRFTLI 157
              E     ++FIDEI  L+   E+            L+   +G  ARS  I L      
Sbjct: 295 EEAEKNSPSIIFIDEIDALAPKREKSQGEVERRIVSQLLTLMDGMKARSNVIVL------ 348

Query: 158 AATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVT 204
            AT R   + + L+   RF   I +   +      I++   K   ++  
Sbjct: 349 GATNRPNSIDSALRRYGRFDREIEIGVPDETGRLEILRIHTKNMKMSED 397



 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 68/188 (36%), Gaps = 15/188 (7%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI---------AKAGDLAALLTNLEDRD 107
           VLF GPPG GKT LA+ VA E   NF S  GP +         +   DL A         
Sbjct: 518 VLFYGPPGCGKTLLAKAVATECKANFISIKGPELLSMWVGESESNIRDLFARARGAAP-C 576

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           VLF DEI  ++                D M+ +  S            +I AT R   L 
Sbjct: 577 VLFFDEIDSIAKARSGN---DGSSGVTDRMLNQLLSEMDGINQKKNVFVIGATNRPDQLD 633

Query: 168 NPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           + L    R    + +   ++E   +I+Q   K T L+   +         + +      +
Sbjct: 634 SALMRPGRLDQLVYIPLPDLESRVSILQATLKKTPLSPDIDLRQLAEATDKFSGADLSEI 693

Query: 226 LRRVRDFA 233
            +R    A
Sbjct: 694 CQRACKLA 701


>gi|294495084|ref|YP_003541577.1| replication factor C large subunit [Methanohalophilus mahii DSM
           5219]
 gi|292666083|gb|ADE35932.1| replication factor C large subunit [Methanohalophilus mahii DSM
           5219]
          Length = 489

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/249 (16%), Positives = 85/249 (34%), Gaps = 31/249 (12%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
                RP  L +  G  +    L+ + E  +         +  GP G+GKT+ A  +  E
Sbjct: 7   WAEKYRPAKLADVVGNNKPLQALRDWEEEWEHGVPEKKAAILSGPAGVGKTSAAHALGNE 66

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLE--------DRDVLFIDEIHRLSIIVEEILYPAM 129
           +G      +      AG +  +  +           + ++ +DE   +    +       
Sbjct: 67  MGWEIIEMNASDQRTAGIIEKVAGSASRMSTLTGIQKRLIILDEADNMHGSADRG----- 121

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
                      G  A +  I  S   +I     +  L++ L+    + I+ N      + 
Sbjct: 122 -----------GTRAITNVIKKSNQPIILIANDLYALSSTLRSHC-VNIKFNPIPQRSIL 169

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR------DFAEVAHAKTITR 243
             +++  K+ G+        +IA  + G  R A + L+         + A+V  A+  T+
Sbjct: 170 PALKKICKMEGIMCGTGVLEKIAENTGGDLRSAIKDLQATATDKKEIEVADVTTAERDTK 229

Query: 244 EIADAALLR 252
           E     L +
Sbjct: 230 ESIFKVLTK 238


>gi|146094540|ref|XP_001467307.1| replication factor C, subunit 4 [Leishmania infantum JPCM5]
 gi|321398414|emb|CBZ08802.1| putative replication factor C, subunit 4 [Leishmania infantum
           JPCM5]
          Length = 360

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 51/312 (16%), Positives = 94/312 (30%), Gaps = 77/312 (24%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+T+ +  G  EA S L+V      A+   L ++L  GPPG GKTT    +AR
Sbjct: 7   PWVEKYRPQTVADIVGNTEAISRLQVI-----AKEGNLPNLLLCGPPGTGKTTSMLCLAR 61

Query: 77  -----------------------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDR- 106
                                        EL  +       V  K    A     L  + 
Sbjct: 62  DLLLQSTDTGSAGASPGGATKDILKDAVLELNASDDRGLDVVREKIKLFAQTKKTLPRKF 121

Query: 107 -----------------DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKI 149
                             ++ +DE   ++   ++ L                   R++++
Sbjct: 122 FSTGEGVAKDDHVVHLHKIVLLDEADSMTPAAQQALR------------------RTMEL 163

Query: 150 NLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAAC 209
           + S      A      +  P+Q R  +       + + LK +V    +   ++ TD+   
Sbjct: 164 HSSTTRFAFACNNSSRIIEPIQSRCAVVRFKKLSDADILKRLV-YVIQQENVSYTDDGLE 222

Query: 210 EIAMRSRGTPRIAGRLLRRVRD-FAEVAHAKTITREIADAALLRLAID-----KMGFDQL 263
            +   + G  R A   L+     +  V              LL   +      K   ++ 
Sbjct: 223 ALLYLAEGDLRQALNALQATHTGYGLVNADNVFKVCDQPHPLLVENVITACVTKRNIEEA 282

Query: 264 DLRYLTMIARNF 275
                 ++ R +
Sbjct: 283 HREMNRLLNRGY 294


>gi|110800032|ref|YP_695032.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens ATCC
           13124]
 gi|123344991|sp|Q0TTK8|FTSH_CLOP1 RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|110674679|gb|ABG83666.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens ATCC
           13124]
          Length = 717

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 68/265 (25%), Positives = 106/265 (40%), Gaps = 39/265 (14%)

Query: 26  TLEEFTGQVEACSNL----------KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           T ++  GQ EA  +L          + ++E     A+     L VGPPG GKT LA+ VA
Sbjct: 164 TFKDVAGQDEAKESLVEIVDFLHDTRKYVEIG---AKLPKGALLVGPPGTGKTLLAKAVA 220

Query: 76  RELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYP 127
            E  V F S SG       V   A  +  L    E++   ++FIDEI  +    +  +  
Sbjct: 221 GEAKVPFFSMSGSDFVEMFVGMGAARVRDLFKQAEEKAPCIVFIDEIDAIGKSRDGAIQG 280

Query: 128 AME-DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ-----DRFGIPIRLN 181
             E +  L+ ++ E     S K       ++AAT R  +L   L      DR  I  R +
Sbjct: 281 NDEREQTLNQLLTEMDGFDSSKG----VVILAATNRPEVLDKALLRPGRFDRRIIVDRPD 336

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
               E++  +  R  KL      D +  EIA   + TP   G  L  + + A +   K  
Sbjct: 337 LIGREEILKVHSRDVKL----SDDVSLEEIA---KSTPGAVGADLANIVNEAALRAVKHG 389

Query: 242 TREIADAALLR-LAIDKMGFDQLDL 265
            + +    L   + +   G ++ D 
Sbjct: 390 RKFVIQEDLDEAVEVIIAGQEKRDR 414


>gi|24666867|ref|NP_649133.1| CG8798, isoform A [Drosophila melanogaster]
 gi|7293766|gb|AAF49134.1| CG8798, isoform A [Drosophila melanogaster]
          Length = 1006

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 78/235 (33%), Gaps = 37/235 (15%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           ++  G  +    +  FI  +  +      +L F GPPG+GKT++A+ +AR L   +   S
Sbjct: 512 DDHYGMEDIKKRILEFIAVSSLKGSTQGKILCFHGPPGVGKTSIAKSIARALNREYFRFS 571

Query: 87  GPVIAKAGDLAALLTNLE----------------DRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ ++    +        
Sbjct: 572 VGGMTDVAEIKGHRRTYVGAMPGKLIQCLKKTKIENPLVLIDEVDKIGKGYQGDPSSALL 631

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V ++LSR   I     +  +  PL+DR  +     +
Sbjct: 632 ELLDPEQNANFLD-------HYLDVPVDLSRVLFICTANVIDTIPEPLRDRMELIEMSGY 684

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
              E +       A+   +    +           +      L+R     + V +
Sbjct: 685 VAEEKIA-----IARQYLMPQAMKDCGLTDKHINISEDALNMLIRSYCRESGVRN 734


>gi|260062460|ref|YP_003195540.1| ATP-dependent protease [Robiginitalea biformata HTCC2501]
 gi|88784025|gb|EAR15195.1| ATP-dependent protease [Robiginitalea biformata HTCC2501]
          Length = 822

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 51/273 (18%), Positives = 94/273 (34%), Gaps = 41/273 (15%)

Query: 32  GQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           G  +    +  ++   K R +    +L   GPPG+GKT+L + VA  LG  +   S   +
Sbjct: 366 GLEDVKRRIVEYLAVLKLRNDMKSPILCLYGPPGVGKTSLGKSVAEALGREYVRMSLGGL 425

Query: 91  AKAGDLA------------ALLTNLED----RDVLFIDEIHRLSIIVE--------EILY 126
               ++              ++ NL+       V  +DEI +LS   +        E+L 
Sbjct: 426 RDEAEIRGHRKTYIGAMPGRIIQNLKKAGTSNPVFILDEIDKLSSSAQGDPSSAMLEVLD 485

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           P       D  +  G        +LS+   IA    +G +   L+DR  I I +  Y IE
Sbjct: 486 PEQNSEFYDNFLEMGY-------DLSKVMFIATANNLGTIQPALRDRMEI-INVTGYTIE 537

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +   I +R   L    + +         +    +I  + L ++ +            +  
Sbjct: 538 EKVEIAKR--HLLPKQLKEHGL------ASKDLKIGKKQLEKIVEGYTRESGVRGLEKQI 589

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGP 279
              +   A      +   ++    +     G P
Sbjct: 590 AKMVRYAARHIATDEDYTVKVTNAVVEEVLGAP 622


>gi|158318299|ref|YP_001510807.1| DNA polymerase III subunits gamma and tau [Frankia sp. EAN1pec]
 gi|158113704|gb|ABW15901.1| DNA polymerase III, subunits gamma and tau [Frankia sp. EAN1pec]
          Length = 855

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 61/378 (16%), Positives = 98/378 (25%), Gaps = 103/378 (27%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A  +  RP T  +  GQ      L   + + +     L H  LF GP G GKT+ A+++A
Sbjct: 4   ALYNRYRPATFAQVVGQEHVTEALGHALRSGR-----LHHAYLFSGPRGCGKTSSARILA 58

Query: 76  RELGVNF------------------------RSTSGPVIAKAGDLAALLTNL------ED 105
             L                                        D   L            
Sbjct: 59  ASLNCEKGPTPEPCGVCDQCVSIRTGSSMDVTEIDAASHGLVDDARDLRERAFFAPASAR 118

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDF--------------QLDLMVGEGPSARSVKINL 151
             V  +DE H ++      L   +E+               ++   +       + ++  
Sbjct: 119 FKVFVVDEAHMVTAAAFNALLKVVEEPPSYLKFVFATTEPDKVIATIRSRTHHYAFRLVP 178

Query: 152 SRFTLIAATTR-------VGLLTNPLQDRFGIPIRLNFYEI---------------EDLK 189
                    +        V     PL  R G     +   +               E   
Sbjct: 179 PGVLRKHLESICAQEGVVVEPSVLPLVVRAGAGSVRDSLSVLDQLLAGAGDGGLSYERAV 238

Query: 190 TIVQRGAKLTGLAVTDEAACEI----------AMRSRGTP-RIAGRLLRRVRDFAEVAHA 238
            ++     +      D  A              + S   P R A  LL R+RD   VA  
Sbjct: 239 ALLGMTDGILLDETVDALAERDGAALFTVVDSVVSSGHDPRRFATDLLDRLRDLIVVAAV 298

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETIS----AGLSEPRD 294
                     A     +D+M             A+    GPV +   +    AGL E R 
Sbjct: 299 PDAVERGLLEAFSTDQVDRMR------------AQAGRIGPVELSRTADVLHAGLVEMRG 346

Query: 295 AIEDLIEPYMIQQGFIQR 312
                  P ++ +  + R
Sbjct: 347 T----ASPRLLLELILAR 360


>gi|322694070|gb|EFY85910.1| mitochondrial AAA ATPase, putative [Metarhizium acridum CQMa 102]
          Length = 1013

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 66/314 (21%), Positives = 112/314 (35%), Gaps = 50/314 (15%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEA---------- 53
            + + S  +++E+     LR  T E+     E  S LK+    A  R +A          
Sbjct: 682 EKRISSGQINREN-----LR-TTFEDVHAPKETISALKLLTSLALVRPDAFAYGVLAQDR 735

Query: 54  LDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLEDRD 107
           +   L  GPPG GKT LA+ VA+E G N    SG  I           + A+ T  +  +
Sbjct: 736 IPGCLLYGPPGTGKTMLAKAVAKESGANMLEISGATINDKWVGESEKLIRAVFTLAKKLE 795

Query: 108 --VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
             V+FIDE   L          A     ++  + E               ++ AT R   
Sbjct: 796 PCVVFIDEADSLLAKRSMFSNRASHREHINQFLKEWDGMEETNA-----FIMVATNRPFD 850

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           L + +  R    I ++     D   I+    +L     + +++  +   +R TP  +G  
Sbjct: 851 LDDAVLRRLPRKILMDLPLNADRAAIL----RLLLRDESLDSSVSLDDLARKTPYYSGSD 906

Query: 226 LRRVRDFAEVAHAKTITREIADAALLRLAIDKMG---FDQLDLRYLTMIARNFGGGPVGI 282
           L+         +        A      +A D  G   +   + R L     +F      +
Sbjct: 907 LK---------NVCVAAAMAAVEEENEMAADHEGPEPYQYPERRVLR--RDHFENA---L 952

Query: 283 ETISAGLSEPRDAI 296
           + I A +SE   ++
Sbjct: 953 KQIPASVSEDMTSL 966


>gi|269957762|ref|YP_003327551.1| ATP-dependent metalloprotease FtsH [Xylanimonas cellulosilytica DSM
           15894]
 gi|269306443|gb|ACZ31993.1| ATP-dependent metalloprotease FtsH [Xylanimonas cellulosilytica DSM
           15894]
          Length = 669

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 66/248 (26%), Positives = 101/248 (40%), Gaps = 31/248 (12%)

Query: 26  TLEEFTGQVEACSNL----KVFIEAAKARA---EALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  EA   L    +   E  K +A   +    VL  GPPG GKT LA+ VA E 
Sbjct: 167 TFADVAGAEEAVEELHEIKEFLAEPTKFQAVGAKIPKGVLLYGPPGTGKTLLARAVAGEA 226

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG       V   A  +  L    +     ++F+DEI  +       +    +
Sbjct: 227 GVPFYSISGSDFVEMFVGVGASRVRDLFEQAKQNAPAIIFVDEIDAVGRHRGAGMGGGHD 286

Query: 131 DFQLD----LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
           + +      L+  +G   ++  I       IAAT R  +L   L    RF   I +   +
Sbjct: 287 EREQTLNQLLVEMDGFDVKTNVIL------IAATNRPDILDPALLRPGRFDRQIAVEAPD 340

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           ++  + I+Q  AK   +      A ++A  +R TP   G  L  V + A +  A++  + 
Sbjct: 341 LKGREAILQVHAKGKPM----VPAVDLAAVARRTPGFTGADLANVLNEAALLTARSGAQL 396

Query: 245 IADAALLR 252
           I D AL  
Sbjct: 397 IDDRALDE 404


>gi|157065028|gb|ABV04347.1| membrane protein FtsH1 [Toxoplasma gondii]
          Length = 1250

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 45/196 (22%), Positives = 80/196 (40%), Gaps = 17/196 (8%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAKARAE-------ALDHVLFVGPPGLGKTTLAQVVAR 76
           P T  +  G  EA + L+  ++  +  ++           VL VGPPG GKT LA+ VA 
Sbjct: 347 PLTFNDLAGLTEAKTELQEVVQFLRDPSKFERLGARLPKGVLLVGPPGTGKTALARAVAT 406

Query: 77  ELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPA 128
           E GV +   SG           A  +  L +   +    ++F+DE+  +    +    P 
Sbjct: 407 EAGVPYFYASGSEFVEIYVGQGARRVRGLFSYARNHSPCIIFLDELDAVGGRRQASAGPG 466

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
             + + D  + +           SR  ++AAT RV  L   L    RF   + ++  ++ 
Sbjct: 467 AGNREHDQTLNQLLVEMDGFNQASRIVVLAATNRVDTLDPALLRPGRFDRIVHVSLPDVA 526

Query: 187 DLKTIVQRGAKLTGLA 202
             + I+Q+  +   + 
Sbjct: 527 ARELILQKYLQRVPVE 542


>gi|116493222|ref|YP_804957.1| DNA polymerase III, gamma/tau subunit [Pediococcus pentosaceus ATCC
           25745]
 gi|116103372|gb|ABJ68515.1| DNA polymerase III, gamma/tau subunit [Pediococcus pentosaceus ATCC
           25745]
          Length = 581

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 61/186 (32%), Gaps = 44/186 (23%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  ++  GQ      LK     A    +     LF GP G GKT+ A++ A+ +  ++
Sbjct: 11  RPQKFDDMVGQDVVTRTLK----NALITEQTSHAYLFTGPRGTGKTSAAKIFAKAVNCHY 66

Query: 83  ------------------------RSTSGPVIAKAGDLAALLTNLE------DRDVLFID 112
                                               ++  +    +      D  V  +D
Sbjct: 67  LKDGEPCNECVTCKAITEGTLNDVIEIDAASNNGVEEIRDIRDKAKYAPTEADYKVYIVD 126

Query: 113 EIHRLSIIVEEILYPAMEDF---QLDLMVGEGPS-------ARSVKINLSRFTLIAATTR 162
           E+H LS      L   +E+     + ++    P        +R+ + +  R T   +  R
Sbjct: 127 EVHMLSTGAFNALLKTLEEPPANVIFILATTEPQKIPLTIISRTQRFDFKRITPAQSYDR 186

Query: 163 VGLLTN 168
           +  + +
Sbjct: 187 MVYILD 192


>gi|157113438|ref|XP_001657828.1| ATP-dependent Lon protease, putative [Aedes aegypti]
 gi|108877715|gb|EAT41940.1| ATP-dependent Lon protease, putative [Aedes aegypti]
          Length = 956

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 83/242 (34%), Gaps = 37/242 (15%)

Query: 32  GQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           G  +    +  FI  ++ +      +L F GPPG+GKT++A+ +AR L   +   S   +
Sbjct: 498 GMEDIKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIARSIARALNREYFRFSVGGM 557

Query: 91  AKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE--------EILY 126
               ++                        +  ++ IDE+ ++    +        E+L 
Sbjct: 558 TDVAEIKGHRRTYVGAMPGKLIQCLKKTKTENPLVLIDEVDKIGKGYQGDPSSALLELLD 617

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           P      LD           V ++LS+   I     +  +  PL+DR  + I ++ Y  E
Sbjct: 618 PEQNVNFLD-------HYLDVPVDLSKVLFICTANVIETIPEPLRDRMEM-IDMSGYVAE 669

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +   I    AK   +                T      L+R     + V + +    ++ 
Sbjct: 670 EKVAI----AKQYLIPQAKNNCGLEDKHINITDEALNVLIRSYCRESGVRNLQKQIEKVV 725

Query: 247 DA 248
             
Sbjct: 726 RK 727


>gi|314959094|gb|EFT03196.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL002PA1]
          Length = 717

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 65/276 (23%), Positives = 96/276 (34%), Gaps = 26/276 (9%)

Query: 24  PR-TLEEFTGQVEACSNLKVFIE-----AAKARAEA--LDHVLFVGPPGLGKTTLAQVVA 75
           P+ T  +  G  EA   L+   E     A   R  A     VL  GPPG GKT LA+ VA
Sbjct: 162 PKSTFADVAGCQEAIDELQEIREFLAEPAKFQRVGAKIPKGVLLYGPPGTGKTLLARAVA 221

Query: 76  RELGVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
            E GV F S SG            ++  DL           ++FIDEI  +       + 
Sbjct: 222 GEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKEAAP-AIIFIDEIDAVGRHRGAGMG 280

Query: 127 PAMEDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNF 182
              ++ +  L  ++ E               LIAAT R  +L   L    RF   I +  
Sbjct: 281 GGHDEREQTLNQLLVEMDGFDVHGG----VILIAATNRPDVLDPALLRPGRFDRQIAVEA 336

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            +++    I++  A    +A   + A         T      +L         A+   I 
Sbjct: 337 PDLDGRLKILKVHAHGKPMADDVDLASIARRTPGMTGADLANVLNEAALLTARANLPVIG 396

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
               D A+ R+        +L   Y  ++     GG
Sbjct: 397 NSELDEAIDRVIAGPQKKTRLMNEYERLVTAYHEGG 432


>gi|312200643|ref|YP_004020704.1| DNA polymerase III subunits gamma and tau [Frankia sp. EuI1c]
 gi|311231979|gb|ADP84834.1| DNA polymerase III, subunits gamma and tau [Frankia sp. EuI1c]
          Length = 833

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 84/278 (30%), Gaps = 25/278 (8%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A  +  RP T  +  GQ    S L   +   +     L H  LF GP G GKT+ A+++A
Sbjct: 4   ALYNRYRPATFSQVVGQEHVTSALMQALRTGR-----LHHAYLFSGPRGCGKTSSARILA 58

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAM 129
             L      T  P      D    +      DV  ID      +     L       PA 
Sbjct: 59  ASLNCEKGPTPDP--CGVCDQCVSIRTGSSMDVTEIDAASHGLVDDARDLRERAFFAPAS 116

Query: 130 EDFQLDLMVGE--------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
             F++ ++               + V+   S    + ATT    +   ++ R        
Sbjct: 117 ARFKIFVVDEAHMVTAAAFNALLKVVEEPPSYLKFVFATTEPDKVIATIRSR-THHYAFR 175

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
                 L+  +   A   G+ V       +     G+ R +  +L ++   A     +  
Sbjct: 176 LVPPGVLRDHLASVAAQEGVDVDPAVLPLVVRAGAGSVRDSLSVLDQLLAGAGSDGLRYD 235

Query: 242 TREIADAALLRLAIDK--MGFDQLDLRYLTMIARNFGG 277
                      + +D+        D   L  +     G
Sbjct: 236 RAVALLGMTDGVLLDETVDALAARDGATLFTVVDKVVG 273


>gi|311977902|ref|YP_003987022.1| putative replication factor C small subunit [Acanthamoeba polyphaga
           mimivirus]
 gi|82050828|sp|Q5UQ72|RFCS4_MIMIV RecName: Full=Putative replication factor C small subunit L510;
           Short=RFC small subunit L510; AltName: Full=Clamp loader
           small subunit L510
 gi|55417124|gb|AAV50774.1| putative replication factor C subunit [Acanthamoeba polyphaga
           mimivirus]
 gi|308204876|gb|ADO18677.1| putative replication factor C small subunit [Acanthamoeba polyphaga
           mimivirus]
          Length = 363

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 48/238 (20%), Positives = 82/238 (34%), Gaps = 32/238 (13%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M+D E +           I   RP+ LE+ T Q +   NL    + +  + E + H LF 
Sbjct: 1   MIDDESV---------PWIEKYRPKKLEDIT-QSQ---NLLDLFKNSTKKGE-MTHFLFY 46

Query: 61  GPPGLGKTTLAQVVARELGVNFRS-----TSGPVIAKAGDLAALLTNLEDRDVLFIDEIH 115
           GPPG GKT+    + RE+            +         +   +TN   + V  I    
Sbjct: 47  GPPGTGKTSAILAMGREIFKEHFQNRVIEFNASDDRGINAVREKITNEAKKYVAEI---- 102

Query: 116 RLSIIVEEILYPAMEDFQLDL---MVGEGPSA-RSVKINLSRFT-LIAATTRVGLLTNPL 170
               + +  + P+ +   LD    M  E   A R +    S  T        +  +T+ +
Sbjct: 103 ---KLEDGTIIPSYKIIILDEADSMTDEAQDALRVIIEQYSTATRFCFICNYITKITDAI 159

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
           + R    +       E +   +   +    + +       I   S G  R A  LL+ 
Sbjct: 160 KSRCS-SVYFKKLSDECMVEKLNDISLKESMELPKNILHTIIDVSNGDMRKAIMLLQN 216


>gi|257461237|ref|ZP_05626334.1| DNA polymerase III subunit tau [Campylobacter gracilis RM3268]
 gi|257441265|gb|EEV16411.1| DNA polymerase III subunit tau [Campylobacter gracilis RM3268]
          Length = 763

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 59/334 (17%), Positives = 105/334 (31%), Gaps = 65/334 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     RP++ E+  GQ     +L   +++ +     L H  LF G  G GKT+ A++ A
Sbjct: 3   ALALKYRPKSFEQLIGQDAVAKSLAHALDSGR-----LSHAYLFSGLRGSGKTSTARIFA 57

Query: 76  RE------------------------LGVNFRSTSGPVIAKAGDLAALLTNLE------D 105
           +                           ++          K  D+  L+   +       
Sbjct: 58  KALLCDKGPTGKPCEVCDNCVMANEGRHIDIIEMDAASHRKIDDIRELIEQTKYHPASAR 117

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLS-----RFTLIA 158
             +  IDE+H L+      L   +E+    +  ++      +     LS     RF  IA
Sbjct: 118 FKIFIIDEVHMLTKEASNALLKTLEEPPAYVKFILATTDPLKLPVTVLSRTQHFRFKPIA 177

Query: 159 ATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGT 218
            +  V  L   L+           YE   L+ + + G+      +T      I  R   T
Sbjct: 178 KSAVVAHLAQILKTENIA------YEDGALEILARSGSGSLRDTLTLLDQAIIFSREGIT 231

Query: 219 PRIAGRL----------------LRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQ 262
            R    +                LR+ R  A     +             +A  K  F +
Sbjct: 232 QRAIADMLGLLDPAKIGEILDIVLRQDRAGAIEIIKEVENYNAETIIDEMIANLKDKFLR 291

Query: 263 LDLRYLTMIARNFGGGPVGIETISAGLSEPRDAI 296
            D ++  ++   F     G +++ A   +   AI
Sbjct: 292 RDAKFSLLMYERFFRILAGAKSMLAISPDNTYAI 325


>gi|237839531|ref|XP_002369063.1| replication factor C small subunit, putative [Toxoplasma gondii
           ME49]
 gi|211966727|gb|EEB01923.1| replication factor C small subunit, putative [Toxoplasma gondii
           ME49]
 gi|221483291|gb|EEE21610.1| replication factor C / DNA polymerase III gamma-tau subunit,
           putative [Toxoplasma gondii GT1]
 gi|221507780|gb|EEE33367.1| replication factor C / DNA polymerase III gamma-tau subunit,
           putative [Toxoplasma gondii VEG]
          Length = 357

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 49/265 (18%), Positives = 92/265 (34%), Gaps = 46/265 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RPR +E+   QVE    L+  +E        + H+LF GPPG GKT+ A  + R
Sbjct: 32  PWVEKYRPRRVEDMAHQVEPKKMLRRILETG-----NMPHLLFYGPPGTGKTSAALALVR 86

Query: 77  ELGVNFRSTSGPVIAKAGDLAAL---LTNLEDRD---------------------VLFID 112
           EL     + +  +   A D   +      ++                        ++ +D
Sbjct: 87  ELFGREEAKNRLLELNASDDRGIKVVRERIKQYTKTNIAKGKINPETGREMPTWKIVILD 146

Query: 113 EIHRLSIIVEEILYPAMEDFQLD--LMVGEGPSARSVKINLSRFTLIA----ATTRVGLL 166
           E   ++   +  L   ME F      ++      R +    SR +       A       
Sbjct: 147 EADMMTQDAQSALRRIMEAFSRTTRFIIICNYVHRIIDPIFSRCSPHRFEPVARDAQEAR 206

Query: 167 TNPLQDRFGIP---------IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRG 217
              + D  G+          +R++  ++    T++Q  A +    + ++A  E+A   + 
Sbjct: 207 IRHICDSEGLVVTSGAVDALLRISQGDLRRAVTLLQSAASIYDDNLHEDAILEVA--GQP 264

Query: 218 TPRIAGRLLRRVRDFAEVAHAKTIT 242
             RI    LR  +     A ++   
Sbjct: 265 PARIVTDFLRACQASPSQASSEVDN 289


>gi|196015676|ref|XP_002117694.1| hypothetical protein TRIADDRAFT_61745 [Trichoplax adhaerens]
 gi|190579734|gb|EDV19824.1| hypothetical protein TRIADDRAFT_61745 [Trichoplax adhaerens]
          Length = 736

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 45/210 (21%), Positives = 77/210 (36%), Gaps = 30/210 (14%)

Query: 20  SLLR------PRTL-EEFTGQVEACSNLKVFIEAAKARA--------EALDHVLFVGPPG 64
           S +R      P+ L  +  GQ E    LK  +E              +    +L  GPPG
Sbjct: 457 SAMREVAVEVPKVLWTDIGGQQEIKQRLKESVEWPIKHPSTFRRLGVKPPKGILLYGPPG 516

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLAALLTNLEDR------DVLFIDEIHR 116
             KT +A+ +A E G+NF +  GP +     G+    +  L  +       ++F DEI  
Sbjct: 517 CSKTMIAKALATESGLNFLAVKGPELFNKWVGESEKAVRELFRKARAASPSIIFFDEIDA 576

Query: 117 LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RF 174
           L+          + D  L  ++ E          L   T++AAT R  ++   L    R 
Sbjct: 577 LAAQRGSD-GAGVGDRVLTQLLTELDGIE----QLEDVTIVAATNRPEMIDKALLRPGRI 631

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVT 204
              + +   + E    I++   +   +   
Sbjct: 632 DRILYVPLPDSETRHEILKIQFRRIPVNDD 661



 Score = 39.7 bits (91), Expect = 0.60,   Method: Composition-based stats.
 Identities = 41/210 (19%), Positives = 74/210 (35%), Gaps = 33/210 (15%)

Query: 26  TLEEFTG---QVEACSNLKVFIEAAKARAEAL---DHVLFVGPPGLGKTTLAQVVARELG 79
           T  E  G   Q+     +  F   +     +L   + +L  GP G+GKT +A+  A E G
Sbjct: 238 TFNEVGGLKKQIRMIKEIMDFTTISGDHGSSLGIMNGILLHGPSGVGKTLVAEAAANESG 297

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDR---------------DVLFIDEIHRLS 118
                 +GP I           L  +  +   R                ++ +DE+  + 
Sbjct: 298 KTSFHINGPEIFSRLYGESEAKLRRIFDDAVHRALITAVSWPFRNRAPSIIIVDELDTIC 357

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS-RFTLIAATTRVGLLTNPLQD--RFG 175
                  Y   E  +  +        R  K + S R  +IA+T R+  +   L+   RF 
Sbjct: 358 PKR---SYTQNEVEKRIVATFASLLDRISKSSGSERVVVIASTNRIDAIDTALRRPGRFD 414

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTD 205
             I ++   I+D K  ++       +++  
Sbjct: 415 REIEISIPSIDDRKEQLKDFEGELRISLQP 444


>gi|168185579|ref|ZP_02620214.1| putative Cell division protease FtsH homolog [Clostridium botulinum
           C str. Eklund]
 gi|169296515|gb|EDS78648.1| putative Cell division protease FtsH homolog [Clostridium botulinum
           C str. Eklund]
          Length = 611

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 68/285 (23%), Positives = 112/285 (39%), Gaps = 26/285 (9%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +T  +  GQ EA  +L   ++            A+     L VGPPG GKT LA+ VA E
Sbjct: 160 KTFNDVAGQDEAKESLIEIVDFLHNPDKYVAIGAKLPKGALLVGPPGTGKTLLAKAVAGE 219

Query: 78  LGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
             V F S SG       V   A  +  L    E +   ++FIDEI  +    +  +    
Sbjct: 220 AKVPFFSLSGSSFVEMFVGMGAARVRDLFEQAEQKAPCIIFIDEIDAIGKSRDGNIGGGN 279

Query: 130 EDFQLDLMVGEGPSARSVKINLSR-FTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           ++ +  L       A     + S+   ++AAT R  +L   L    RF   + ++  +++
Sbjct: 280 DEREQTL---NQLLAEMDGFDGSKGVVILAATNRPEVLDKALLRPGRFDRRVIVDTPDLK 336

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++  AK   ++  D    EIA   + TP   G  L  + + A +   K   + + 
Sbjct: 337 GREAILKVHAKDVKMS-EDVNLDEIA---KSTPGAVGADLANMVNEAALLAVKKDRKSVI 392

Query: 247 DAALLR-LAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
              L   + I   G ++ D        R      VG   ++A L 
Sbjct: 393 QEDLEEAVEIIIAGKEKKDRIMSDSEKRRVAFHEVGHALVAALLK 437


>gi|296775809|gb|ADH43064.1| DNA polymerase III, gamma/tau subunits [uncultured SAR11 cluster
           alpha proteobacterium H17925_48B19]
          Length = 514

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 49/236 (20%), Positives = 77/236 (32%), Gaps = 53/236 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  E+  GQ          I+ +    ++ +  LF G  G+GKTT A++VA+ L    
Sbjct: 13  RPKVFEDLIGQEIIAET----IKNSIISDKSPNAFLFTGIRGVGKTTFARIVAKSLNCEH 68

Query: 83  RSTS------------------------GPVIAKAGDLAALLT------NLEDRDVLFID 112
              +                                D+  L+             +  ID
Sbjct: 69  GIENMCKKKCSNCDAITNSNHIDVLEMDAASKTGVDDVRELIEFSRYGPTTAKYKIFIID 128

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS      L   +E+                         I ATT +  +   +  
Sbjct: 129 EVHMLSKQAFNALLKTLEE------------------PPKYLKFIFATTEIKKIPVTVIS 170

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
           R      L+  + E+L   ++      G  V+DEA   I   S G+ R A  LL R
Sbjct: 171 RCQ-RFDLSRVKSEELFNYIKMIKDKEGGKVSDEALKLIVKISEGSVRDALSLLDR 225


>gi|120598523|ref|YP_963097.1| DNA polymerase III subunits gamma and tau [Shewanella sp. W3-18-1]
 gi|120558616|gb|ABM24543.1| DNA polymerase III, subunits gamma and tau [Shewanella sp. W3-18-1]
          Length = 984

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 51/241 (21%), Positives = 77/241 (31%), Gaps = 55/241 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQV-------- 73
           RP T E+  GQ      L   +       + L H  LF G  G+GKT+LA++        
Sbjct: 38  RPATFEQMVGQSHVLHALTNALS-----QQRLHHAYLFTGTRGVGKTSLARLFAKGLNCE 92

Query: 74  ----------------VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRD------VLFI 111
                           +A+   V+          K  D   LL N++ R       V  I
Sbjct: 93  QGVTATPCGVCGSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPTRGRFKVYLI 152

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 153 DEVHMLSRSSFNALLKTLEE------------------PPEHVKFLLATTDPQKLPVTVL 194

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L     +++ T +        L    EA   +A  + G+ R A  L  +   
Sbjct: 195 SRC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEVEALTLLAKAANGSMRDALSLTDQAIA 253

Query: 232 F 232
           F
Sbjct: 254 F 254


>gi|26554263|ref|NP_758197.1| DNA polymerase III subunits gamma and tau [Mycoplasma penetrans
           HF-2]
 gi|26454272|dbj|BAC44601.1| DNA polymerase III gamma-tau subunits [Mycoplasma penetrans HF-2]
          Length = 804

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 75/243 (30%), Gaps = 53/243 (21%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
              RP +  E  GQ      L      +  + +     +F GP G+GKT++A++ ++ L 
Sbjct: 9   RKYRPNSFNEIIGQKFIIKTLS----NSIIKNKQSHAYIFSGPKGVGKTSIAKIFSKVLN 64

Query: 80  V------------------------NFRSTSGPVIAKAGDLAALLTNLE------DRDVL 109
                                    +            G++  ++  +          V 
Sbjct: 65  CLNLKDGDCCNNCNNCNLINQNQAVDIVELDAASNNGVGEVRNIIDTINYLPSVLKYKVY 124

Query: 110 FIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
            IDE H LS          +ED                         I ATT        
Sbjct: 125 IIDEAHMLSNAAWNTFLKLIED------------------PPKYLVFIFATTESYKFPPT 166

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           +  R      L     E LK  ++  AK   + V D A  +IA  + G+ R A  L+ ++
Sbjct: 167 IISRCQRYNFLKLNNSE-LKECLKSIAKKEKIKVEDNALNKIAELADGSLRDACSLIDQL 225

Query: 230 RDF 232
             +
Sbjct: 226 DSY 228


>gi|256383978|gb|ACU78548.1| peptidase, M41 family [Mycoplasma mycoides subsp. capri str. GM12]
 gi|256384810|gb|ACU79379.1| peptidase, M41 family [Mycoplasma mycoides subsp. capri str. GM12]
 gi|296455408|gb|ADH21643.1| peptidase, M41 family [synthetic Mycoplasma mycoides JCVI-syn1.0]
          Length = 648

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 58/248 (23%), Positives = 97/248 (39%), Gaps = 29/248 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAK-------ARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G  E  S L   ++  K       A A A   VL  GPPG GKT LA+ VA E 
Sbjct: 168 KFSDVAGIEEEKSELVELVDYLKQPAKYASAGARAPKGVLMEGPPGTGKTLLAKAVAGEA 227

Query: 79  GVNFRSTSGPVIA------KAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAME 130
            V+F S +G           A  +  +    +     ++FIDEI  +       +     
Sbjct: 228 NVSFFSIAGSEFEEMFVGVGASRVREMFNEAKKAAPAIIFIDEIDAVGRKRNSAIGTGTN 287

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
           +  L+ ++ E     +     S   ++AAT RV +L   L    RF   I+++  +I++ 
Sbjct: 288 EQTLNQLLVELDGFETN----SGIIVMAATNRVDVLDPALLRPGRFDRVIQVSLPDIKER 343

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV----AHAKTITRE 244
           + I++  A+   +      + +    +  TP  +G  L  V + A +         I   
Sbjct: 344 EQILKLHARNKKID----PSIDWHRIAERTPGFSGAQLENVLNEAAILMVREGKTVIGIN 399

Query: 245 IADAALLR 252
             D A+ R
Sbjct: 400 EIDEAIDR 407


>gi|225630794|ref|YP_002727585.1| DNA polymerase III, gamma/tau subunit [Wolbachia sp. wRi]
 gi|225592775|gb|ACN95794.1| DNA polymerase III, gamma/tau subunit [Wolbachia sp. wRi]
          Length = 533

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 82/227 (36%), Gaps = 25/227 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP + ++  GQ          +E A    +    +L  G  G+GKTT A+++A  L  + 
Sbjct: 8   RPSSFKDLVGQDILV----RVLENAFILNKIPQSILLSGSSGVGKTTTARIIALCLNCS- 62

Query: 83  RSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEIL-----YPAMEDFQLD 135
               GP+    G     L   N    DV+ ID     SI   +++     Y  +      
Sbjct: 63  ---LGPIFEPCGSCENCLAIKNSSHPDVIEIDAASHTSIDDIKVILGDICYSPISSKFKV 119

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             ++++   S    I ATT +  +   +  R      L+   + 
Sbjct: 120 YIIDEVHMLSSSAFNALLKTLEEPPSSVKFILATTEIKKIPITIIARCQ-RFDLHNIPVA 178

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
            +   +   A+    ++   A   IA  S  + R A  L+ +   ++
Sbjct: 179 KIVERLNDVAQKESYSIEKGALELIARHSGNSMRNALFLMNQAVLYS 225


>gi|188024383|ref|ZP_02997049.1| ATP-dependent metalloprotease FtsH [Ureaplasma urealyticum serovar
           7 str. ATCC 27819]
 gi|188018651|gb|EDU56691.1| ATP-dependent metalloprotease FtsH [Ureaplasma urealyticum serovar
           7 str. ATCC 27819]
          Length = 721

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 60/266 (22%), Positives = 92/266 (34%), Gaps = 30/266 (11%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAK-------ARAEALDH 56
            + LL  N        S +R     +  G  E    L   ++  K       A A     
Sbjct: 218 SDSLLGTNKGNAKLTKSSVR---FSDVAGIAEVKEELIEIVDFLKEPKKYVAAGARIPKG 274

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA------KAGDLAALLTNLEDR--DV 108
           V+  GPPG GKT +A+ VA E  V F  T+G           A  +  L          +
Sbjct: 275 VMLYGPPGTGKTLIAKAVAGEANVPFFQTTGSSFEDTFVGVGARRVRELFEKARKSAPAI 334

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +FIDEI  ++         A++D  ++ ++ E     +     S   ++AAT R+  L +
Sbjct: 335 IFIDEIDSVAKKR-GNSLTAVQDQTINQLLSELDGFDTS----SGVIVMAATNRLDTLDD 389

Query: 169 PLQ-----DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAG 223
            +      DR       +  E E +  I  R   L+     ++ A   A  S        
Sbjct: 390 AILRPGRFDRQISVNLPDILEREQILRIHSRNKNLSAKVSLEDIARRTAGFSGAQLENVL 449

Query: 224 R--LLRRVRDFAEVAHAKTITREIAD 247
               L  VRD A   H   +   I  
Sbjct: 450 NEAALLSVRDKATSIHMNHLDEAIDR 475


>gi|68068217|ref|XP_676018.1| cell division cycle ATPase [Plasmodium berghei strain ANKA]
 gi|56495516|emb|CAH99651.1| cell division cycle ATPase, putative [Plasmodium berghei]
          Length = 932

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 46/210 (21%), Positives = 74/210 (35%), Gaps = 34/210 (16%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAE--------ALD 55
            E  L+R   +E+ D         E+  G  +  + ++  IE      E        A  
Sbjct: 270 SETFLNREDYEENTDD-----INYEDLGGMKKQLNKIRELIELPLKYPEIFMSIGISAPK 324

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD-- 107
            VL  G PG GKT++A+ +A E        +GP I           L  +     ++   
Sbjct: 325 GVLMHGIPGTGKTSIAKAIANESNAYCYIINGPEIMSKHIGESEQKLRKIFKKASEKTPC 384

Query: 108 VLFIDEIH---RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164
           ++FIDEI             L   +    L LM G   +   +        ++AAT R  
Sbjct: 385 IIFIDEIDSIANKRNKSSNELEKRVVSQLLTLMDGLKKNNNVL--------VLAATNRPN 436

Query: 165 LLTNPLQD--RFGIPIRLNFYEIEDLKTIV 192
            L   L+   RF   I +   + +    I+
Sbjct: 437 SLDPALRRFGRFDREIEIPVPDEQGRYEIL 466



 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 46/197 (23%), Positives = 73/197 (37%), Gaps = 22/197 (11%)

Query: 26  TLEEFTGQVEACSNLK--VFIEA------AKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           T ++  G       LK  +           K  +     +L  GPPG GKT LA+ +A E
Sbjct: 634 TWDDIGGMQYVKEQLKETILYPLEYKHLYNKFNSNYNKGILLYGPPGCGKTLLAKAIANE 693

Query: 78  LGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAM 129
              NF S  GP +     G+  A + +L D+       ++F DEI  L+           
Sbjct: 694 CNANFISVKGPELLTMWFGESEANVRDLFDKARAASPCIIFFDEIDSLAKERNSNNNNDA 753

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            D  ++ ++ E               +IAAT R  +L   L    R    I ++  + + 
Sbjct: 754 SDRVINQILTEI----DGINEKKTIFIIAATNRPDILDKALTRPGRLDKLIYISLPDFKS 809

Query: 188 LKTIVQRGAKLTGLAVT 204
             +I +   K T L   
Sbjct: 810 RCSIFKAILKNTPLNKD 826


>gi|156840873|ref|XP_001643814.1| hypothetical protein Kpol_1044p15 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156114440|gb|EDO15956.1| hypothetical protein Kpol_1044p15 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 839

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 47/218 (21%), Positives = 78/218 (35%), Gaps = 16/218 (7%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARA--EALDHVLFVGPPGLGKTTLAQVVARELGVNFRST 85
           ++   Q+     L +           E    VL  GPPG GKT++A  +A EL V F S 
Sbjct: 216 DDVIAQLMELIGLPILHPEIYQSTGVEPPRGVLLHGPPGCGKTSIANALAGELQVPFISI 275

Query: 86  SGPVI------AKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           S P +           +  L    +     ++F DEI  ++   +      ME   +  +
Sbjct: 276 SAPSVVSGMSGESEKKIRDLFDEAKAIAPCLMFFDEIDAITPKRDGGAQREMERRIVAQL 335

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRG 195
           +         K       +I AT R   L   L+   RF   I LN         I+++ 
Sbjct: 336 LTSMDELSMEKTGGKPVIVIGATNRPDSLDAALRRAGRFDREICLNVPNEVSRLHILKKM 395

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
           ++   +        + A  ++ TP   G  L+ +   A
Sbjct: 396 SENLKID----GEIDFAQLAKLTPGFVGADLKALSTAA 429



 Score = 47.0 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 77/227 (33%), Gaps = 20/227 (8%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLT 101
           K    A   VL  GPPG GKT LA+ VA E   NF S  GP +           +  + T
Sbjct: 569 KVGISAPAGVLLWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESERSIRQVFT 628

Query: 102 NLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA 159
                   V+F DE+  L     +          ++ ++ E       +       +I A
Sbjct: 629 RARASVPCVIFFDELDALVPRR-DTSLSESSSRVVNTLLTELDGLNDRRG----IFVIGA 683

Query: 160 TTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQ---RGAKLTGLAVTDEAACEIAMR 214
           T R  ++   +    R    + +     ++   I++   R          +        R
Sbjct: 684 TNRPDMIDPAMLRPGRLDKTLFIELPNEDEKLDIIKTLTRSNGTPLADDVELQTIISDER 743

Query: 215 SRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
            R         L  VR+ + +A  ++  +     +++   +DK   D
Sbjct: 744 CRNFSGADLAAL--VRESSVLALKRSFFKSDEIQSVVHNDLDKEFED 788


>gi|320526776|ref|ZP_08027966.1| ATPase, AAA family [Solobacterium moorei F0204]
 gi|320132744|gb|EFW25284.1| ATPase, AAA family [Solobacterium moorei F0204]
          Length = 714

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 50/235 (21%), Positives = 88/235 (37%), Gaps = 31/235 (13%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACS---NLKVFIEAAKARAEA-------LDHVL 58
           SRN S+E  +++    R L E  G  E  +   +L+  +   + R E          H++
Sbjct: 421 SRNSSEELEEVN----RELSEIIGLDEVKAYITSLQSLVAMQQKRREQGMKTATLSKHMI 476

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA--KAGDLAALLTNLEDRD--------- 107
           F G PG GKTT+A++++R +      T G ++   ++  +A  +                
Sbjct: 477 FTGNPGTGKTTIARLISRYMKAIGALTQGQLVEVSRSDLVAQYVGQTAPLTMSVIKSAIG 536

Query: 108 -VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
            VLFIDE + L    ++       D  +  M     +   +     +   +   +  G  
Sbjct: 537 GVLFIDEAYSLHRGKDDAFGLECIDTLVKAMEDNRDNLIVILAGYKKEMSVFLESNSG-- 594

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRI 221
              L+ RF   I    Y  E+L  I    AK  G  + +  A ++         I
Sbjct: 595 ---LKSRFPNIINFKDYTGEELYQIACLQAKGKGYHIDEAVADKLTAYFNEVQSI 646


>gi|297837097|ref|XP_002886430.1| hypothetical protein ARALYDRAFT_475032 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297332271|gb|EFH62689.1| hypothetical protein ARALYDRAFT_475032 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 334

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 75/228 (32%), Gaps = 38/228 (16%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            +  +   RP  + +  G  +A S L+V      AR   + +++  GPPG GKTT    +
Sbjct: 15  NNPWVEKYRPSKVVDIVGNEDAVSRLQVI-----ARDGNMPNLILSGPPGTGKTTSILAL 69

Query: 75  ARE-----LGVNFRSTSGPVIAKAGDLAALLTNLEDR---------DVLFIDEIHRLSII 120
           A E             +         +   +     +          V+ +DE   ++  
Sbjct: 70  AHELLGPNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTSG 129

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            ++ L   +E +                 N +RF L   T+    +  P+Q R  +    
Sbjct: 130 AQQALRRTIEIYS----------------NSTRFALACNTS--SKIIEPIQSRCALVRFS 171

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
              + + L  ++    +   +    E    I   + G  R A   L+ 
Sbjct: 172 RLSDQQILGRLLV-VVEAENVPYVPEGLEAIIFTADGDMRQALNNLQA 218


>gi|257466568|ref|ZP_05630879.1| DNA polymerase III subunits gamma and tau [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|315917723|ref|ZP_07913963.1| DNA polymerase III gamma and tau [Fusobacterium gonidiaformans ATCC
           25563]
 gi|313691598|gb|EFS28433.1| DNA polymerase III gamma and tau [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 478

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 51/270 (18%), Positives = 88/270 (32%), Gaps = 57/270 (21%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
              RP + +E  G+ E    LK  ++  +         LF GP G+GKTT+A+++A+ + 
Sbjct: 7   RKYRPASFQEVAGEQEIVRALKNALKNNQLSQAY----LFTGPRGVGKTTIARLIAKSVN 62

Query: 80  V-------------------------NFRSTSGPVIAKAGDLAALLTNL------EDRDV 108
                                     +             ++  L   +        + V
Sbjct: 63  CLNPKEDGEACGVCENCLSFQEGSFLDLIEIDAASNRGIDEIRLLKEKINYQPSQGKKKV 122

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
             IDE+H L+      L   +E+                    S    I ATT    +  
Sbjct: 123 YIIDEVHMLTKEAFNALLKTLEE------------------PPSHVIFILATTEPDKILP 164

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            +  R           ++D+   +Q       L + +E    I   S G+ R A  +L R
Sbjct: 165 TIISRCQ-RYDFKTLSLQDMGNQLQYILSQENLEMEEEVKELIYEASGGSMRDAISILER 223

Query: 229 VRDFAEVAHAKTITREIADAALLRLAIDKM 258
           +   A     K I+ E ++  L    + KM
Sbjct: 224 LLVSAS---EKKISLEESEKILGMTPVQKM 250


>gi|171058659|ref|YP_001791008.1| DNA polymerase III subunits gamma and tau [Leptothrix cholodnii
           SP-6]
 gi|170776104|gb|ACB34243.1| DNA polymerase III, subunits gamma and tau [Leptothrix cholodnii
           SP-6]
          Length = 650

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 85/233 (36%), Gaps = 24/233 (10%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARE 77
               RPR+  E  GQ      L   +       + L H  LF G  G+GKTT+++++A+ 
Sbjct: 7   ARKYRPRSFAELVGQAHVVQALSNALT-----QQRLHHAYLFTGTRGVGKTTVSRILAKS 61

Query: 78  LGVNFRSTSGPVIAKA-GDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAM 129
           L        G + A   G  +A       R V +++        +  +S ++++ +Y  +
Sbjct: 62  LNCVGADGLGGITATPCGVCSACRDIDAGRHVDYVELDAASNRGVDEISQLLDQAVYKPV 121

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                  M+ E             ++++        + ATT    +   +  R  +   L
Sbjct: 122 VGRFKVYMIDEVHMLSTTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRC-LQFNL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                E +   +Q       +   D A   +A  +RG+ R A  L  +   +A
Sbjct: 181 RPMATETVFEHLQTVLNAESVPFEDPALRLLARGARGSMRDALSLTDQAIAYA 233


>gi|6016879|dbj|BAA31534.2| A2-5a orf6~hypothetical protein homologous to stage V sporulation
           protein K [Bacillus sp.]
          Length = 549

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 55/266 (20%), Positives = 94/266 (35%), Gaps = 27/266 (10%)

Query: 25  RTLEEFTGQVEACSNLKV--FIEA-AKARAEALDHVLFVGPPGLGKTTLAQVVARE---- 77
           ++++++   ++   NLKV    E+   +R     H++F G PG GKTT+A++VA+     
Sbjct: 29  KSVKDYI--LKIEDNLKVQQLRESKGFSRTNISMHMVFTGNPGTGKTTIARIVAKYLKVI 86

Query: 78  ----LGVNFRSTSGPVIAKAGDLAALLTNLEDRD----VLFIDEIHRLSIIVEEILYPAM 129
                G     T   ++ +     A LTN   +     VLFIDE + LS    +      
Sbjct: 87  GVLSTGQLREVTRADLVGEYVGQTARLTNDVIKSALGGVLFIDEAYTLSRNDHDTFGIEA 146

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
            D  +  M         +    S        T  G     L+ RF   +    Y  E++ 
Sbjct: 147 IDTLVKGMEDYRDELVVILAGYSEEMKQFLNTNPG-----LRSRFPNIVHFEDYTPEEMW 201

Query: 190 TIV-----QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            I      Q+G ++T              + +G        L R    A +    +    
Sbjct: 202 EISRIISKQKGYRITDSCQDAMLKLFEKSQIKGKNDSGNGRLVRNVIEAAILKQSSRLVH 261

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTM 270
             +A +  LA +   F+      L  
Sbjct: 262 EINAPMDELAFEDFEFEDNSKFDLET 287



 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 47/243 (19%), Positives = 80/243 (32%), Gaps = 47/243 (19%)

Query: 25  RTLEEFTGQVEACSNLK----VFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQV 73
             L +  G       ++    + I   K R   L        H++F G PG GKTT+A++
Sbjct: 287 TKLSQVVGLENVKQLIRTQQNLLIAEKKRREAGLKVDATQSLHMIFSGNPGTGKTTVARI 346

Query: 74  VA---RELGVNFRSTSGPVIAK----------AGDLAALLTNLEDRDVLFIDEIHRLSII 120
           +A   +E+G+        V +           A     +  +     VLFIDE + L+  
Sbjct: 347 MASMFKEMGLLKSGNFVEVDSGGLTGEHVGQTAKKTEEIFRSALGG-VLFIDEAYGLTSN 405

Query: 121 VE------EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRF 174
                     L   MED + D++V      + +K  L                + L+ RF
Sbjct: 406 SSYGQEAVNTLVKLMEDHREDIVVILAGYNKEMKEFLK-------------SNSGLESRF 452

Query: 175 GIPIRLNFYEIEDL---KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            + +    Y   +L     I+           ++    E                R VR+
Sbjct: 453 PLNVSFPDYTENELFEIAKIIISSKGFFLTQESESVLQEQIAILHKQSSSHSGNGRMVRN 512

Query: 232 FAE 234
           + E
Sbjct: 513 YLE 515


>gi|83768030|dbj|BAE58169.1| unnamed protein product [Aspergillus oryzae]
          Length = 719

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 58/260 (22%), Positives = 96/260 (36%), Gaps = 27/260 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G  EA   L+  +E        +    +    VL VGPPG GKT LA+ VA E 
Sbjct: 246 RFTDVHGCDEAKEELQELVEFLLNPERFSSLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 305

Query: 79  GVNFRSTSGPVIA------KAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAME 130
           GV F   SG           A  +  L T    +   ++FIDE+  +     E    A  
Sbjct: 306 GVPFFYMSGSEFDEVYVGVGAKRVRELFTQARSKAPAIIFIDELDAIGAKRNER-DAAYV 364

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
              L+ ++ E           S   +IAAT    LL   L    RF   + ++  ++   
Sbjct: 365 KQTLNQLLTELDGFSQT----SGVIIIAATNYPQLLDKALTRPGRFDRRVVVDLPDVRGR 420

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             I++   K   ++       ++A+ +RGTP  +G  L  + + A +  ++    ++   
Sbjct: 421 MDILRHHMKDVQISTD----VDVAVIARGTPGFSGADLENLVNQAAIFASRNKQAKVGPR 476

Query: 249 ALLRLAI-DKMGFDQLDLRY 267
                     MG +      
Sbjct: 477 DFDWAKDKIMMGAEARSRVI 496


>gi|14521559|ref|NP_127035.1| cell division control protein [Pyrococcus abyssi GE5]
 gi|5458778|emb|CAB50265.1| ATPase of the AAA+ family [Pyrococcus abyssi GE5]
          Length = 840

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 48/186 (25%), Positives = 73/186 (39%), Gaps = 23/186 (12%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
           T E+  G  EA   ++  +E      E            VL  GPPG GKT LA+ VA E
Sbjct: 210 TYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANE 269

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM 129
               F + +GP I           L  +    E+    ++FIDEI  ++   EE++    
Sbjct: 270 ANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKREEVVGEVE 329

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
           +     L+            +  +  +IAAT R   L   L+   RF   I +   + + 
Sbjct: 330 KRVVSQLLT-----LMDGLKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQG 384

Query: 188 LKTIVQ 193
            K I+Q
Sbjct: 385 RKEILQ 390



 Score = 53.2 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 48/207 (23%), Positives = 77/207 (37%), Gaps = 23/207 (11%)

Query: 28  EEFTGQVEACSNLKVFIE-------AAKARAEALD-HVLFVGPPGLGKTTLAQVVARELG 79
           ++  G  +    L+  +E       A K         VL  GPPG GKT LA+ VA E  
Sbjct: 547 DDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVATESQ 606

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMED 131
            NF +  GP +           +  +          ++FIDEI  ++         A  +
Sbjct: 607 ANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPAR----GTAEGE 662

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
              D ++ +  +     +  S   +IAAT R  +L   L    RF   I +   + +   
Sbjct: 663 KVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARF 722

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSR 216
            I +   +   LA  D    E+A R+ 
Sbjct: 723 EIFKVHTRGMPLA-DDVDLKELARRTE 748


>gi|320527137|ref|ZP_08028324.1| DNA polymerase III, subunit gamma and tau [Solobacterium moorei
           F0204]
 gi|320132465|gb|EFW25008.1| DNA polymerase III, subunit gamma and tau [Solobacterium moorei
           F0204]
          Length = 572

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 79/233 (33%), Gaps = 22/233 (9%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
            + A     R    EE  GQ     ++K  +   K         LF GP G GKTT+A++
Sbjct: 2   SKQALYQKYRSANFEEVVGQEYIVQSIKNAVREHKVGHAY----LFCGPRGTGKTTMARL 57

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL-----YPA 128
           +A+ +       +     +  +  A        D++ I+  +   +     L        
Sbjct: 58  LAKAVNCEHPEKAP--CEECDNCIAANNGTHP-DIIEINAANETHVEDIRDLIDRSKLAP 114

Query: 129 MEDFQLDLMVGEGPS---------ARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           M+      +V E             ++++        + ATT    L   +  R      
Sbjct: 115 MQGHHKVYIVDEVHQLSSAASSALLKTLEEPPENVIFVLATTDPQKLLPTIISRCQ-RFD 173

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
                 + +K  +   AK   + + +EAA  IA+   G  R A  ++ +   +
Sbjct: 174 FTKLRKDQIKNHLLDIAKKENIYLDEEAAENIAVLCDGGMRDALSIMDQCASY 226


>gi|254172418|ref|ZP_04879093.1| AAA family ATPase, CDC48 subfamily [Thermococcus sp. AM4]
 gi|214033347|gb|EEB74174.1| AAA family ATPase, CDC48 subfamily [Thermococcus sp. AM4]
          Length = 838

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 68/301 (22%), Positives = 109/301 (36%), Gaps = 30/301 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
           T E+  G  +A   ++  +E      E            VL  GPPG GKT LA+ VA E
Sbjct: 209 TYEDIGGLSDAIQKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANE 268

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM 129
              +F + +GP I           L  +    E+    ++FIDEI  ++   EE++    
Sbjct: 269 ANAHFIAINGPEIMSKFYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVVGEVE 328

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
           +     L+               +  +IAAT R   +   L+   RF   I +   + + 
Sbjct: 329 KRVVSQLLT-----LMDGLKGRGKVIVIAATNRPDAIDPALRRPGRFDREIEVGVPDKQG 383

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            K I+Q   +   L        E+        R  G+    V     +  A    REI +
Sbjct: 384 RKEILQIHTRGMPLE-PSFDKEEVLAVLEELARRGGKFAEEVGKLKPLVEAAQSGREIKE 442

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
                  +      +L  R L  IA    G  VG + ++A   E       ++   +IQ+
Sbjct: 443 ILKGSGELYSEVKAKLIDRMLDRIADRTHG-FVGAD-LAALAREAAM----VVLRRLIQE 496

Query: 308 G 308
           G
Sbjct: 497 G 497



 Score = 53.9 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 57/162 (35%), Gaps = 20/162 (12%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVARE 77
             ++  G  +    L+  +E      +A           +L  GPPG GKT LA+ VA E
Sbjct: 544 RWDDIGGLEDVKQELREAVEWPLKYPKAFERLGITPPKGILLYGPPGTGKTLLAKAVANE 603

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAM 129
              NF +  GP +           +  +          V+FIDEI  ++           
Sbjct: 604 SEANFIAIRGPEVLSKWVGETEKRIREIFRKARQAAPTVVFIDEIDAIAPAR----GSYE 659

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
               LD ++ +  +        S   +I AT R  ++   L 
Sbjct: 660 GGRHLDTLINQLLTEMDGIQENSGVVVIGATNRPDIIDPALL 701


>gi|170087590|ref|XP_001875018.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164650218|gb|EDR14459.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 817

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 80/226 (35%), Gaps = 18/226 (7%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVARE 77
           T ++  G  +    L+  ++      E            VLF GPPG GKT LA+ +A E
Sbjct: 479 TWDDVGGLEKVKQELQETVQYPVDHPEKFLKYGMSPSKGVLFYGPPGTGKTLLAKAIANE 538

Query: 78  LGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAM 129
              NF S  GP +     G+  A + ++ D+       V+F DE+  ++           
Sbjct: 539 CNANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCVMFFDELDSIAKARGGGGASGD 598

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                D ++ +  +            +I AT R   + + L    R    I +   +   
Sbjct: 599 GGGAGDRVLNQILTEMDGMNTKKNVFIIGATNRPDQIDSALLRPGRLDQLIYIPLPDEPS 658

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
             +I++   K + +A   + +         +      + +R    A
Sbjct: 659 RLSILKAALKKSPVAPEVDLSFLAKNTHGFSGADLTEICQRAAKLA 704



 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 79/225 (35%), Gaps = 20/225 (8%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLED 105
           +    +L  GPPG GKT +A+ VA E G  F   +GP I          +L       E 
Sbjct: 240 KPPRGILMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEK 299

Query: 106 RD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMV-GEGPSARSVKINLSRFTLIAATTR 162
               ++FIDEI  ++   E+            L+   +G  AR      S   ++AAT R
Sbjct: 300 NSPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGLKAR------SNVVVMAATNR 353

Query: 163 VGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
              +   L+ RFG   R     I D    ++    +  +   +    E     +      
Sbjct: 354 PNSIDPALR-RFGRFDREVDIGIPDPTGRLE----ILRIHTKNMKLAEDVDLEQIAADTH 408

Query: 223 GRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRY 267
           G +   V      A  + I  ++    L    ID    D L +  
Sbjct: 409 GYVGSDVASLCSEAAMQQIREKMDLIDLDEDTIDAEVLDSLGVTM 453


>gi|330834419|ref|YP_004409147.1| ATPase central domain-containing protein [Metallosphaera cuprina
           Ar-4]
 gi|329566558|gb|AEB94663.1| ATPase central domain-containing protein [Metallosphaera cuprina
           Ar-4]
          Length = 369

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 43/189 (22%), Positives = 69/189 (36%), Gaps = 22/189 (11%)

Query: 24  PR-TLEEFTGQVEACSNLKVFIEAAKARAEALD-----HVLFVGPPGLGKTTLAQVVARE 77
           P+ +L E  G  +    LK  +     R +         +L  GPPG GKT +A  VA E
Sbjct: 95  PKVSLNEIVGLEDVKEALKEAVVYPSKRPDLFPLGWPRGILLYGPPGCGKTMIAAAVANE 154

Query: 78  LGVNFRSTSGPVI------------AKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVEEI 124
           L   F       I            A+    A  ++  E++  ++FIDE+  L       
Sbjct: 155 LDSEFIHVDAASIMSKWLGEAEKNVARIFKTAREVSKKENKPAIIFIDELDALLASYTSE 214

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           +          L   +G    + K  +SR  +I AT +   L  P   RF   I +   +
Sbjct: 215 VGGEARVRNQFLKEMDG---LADKNEISRVYVIGATNKPWRLDEPFLRRFQKRIYITLPD 271

Query: 185 IEDLKTIVQ 193
                 +++
Sbjct: 272 KAHRLELLK 280


>gi|302916499|ref|XP_003052060.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256732999|gb|EEU46347.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 389

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/245 (14%), Positives = 78/245 (31%), Gaps = 32/245 (13%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
                   +   RP TLE+ +G  +  + +  F++  +     L H+L  GPPG GKT+ 
Sbjct: 38  EAEDSLPWVEKYRPNTLEDVSGHHDILATINKFVDTNR-----LPHLLLYGPPGTGKTST 92

Query: 71  AQVVAR------ELGVNFRSTSGPVIAKAGDLAALLTN-LEDRDVL-------------- 109
              +AR       +       +         +   +      + +               
Sbjct: 93  ILALARRIYGAANMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSLGGASARAGAGFK 152

Query: 110 --FIDEIHRLSIIVEEILYPAMEDFQLD--LMVGEGPSARSVKINLSRFTLIAATTRVGL 165
              +DE   ++   +  L   ME + ++    +    + +     LSR T    +     
Sbjct: 153 LIVLDEADAMTSTAQMALRRIMEKYTVNTRFCIIANYAHKLSPALLSRCTRFRFSPLKEA 212

Query: 166 LTNPLQDRFGIPIRLNF--YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAG 223
               L D+      +      ++ L  + +   +     +    A    +R +  P+I  
Sbjct: 213 DIRVLVDKVVEEEHVKIGGEAVDALVKLSKGDMRRALNVLQACHASSTPLRPKDAPKIPD 272

Query: 224 RLLRR 228
             ++R
Sbjct: 273 SEIKR 277


>gi|225011940|ref|ZP_03702378.1| ATP-dependent protease La [Flavobacteria bacterium MS024-2A]
 gi|225004443|gb|EEG42415.1| ATP-dependent protease La [Flavobacteria bacterium MS024-2A]
          Length = 819

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 52/273 (19%), Positives = 104/273 (38%), Gaps = 38/273 (13%)

Query: 25  RTLE-EFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNF 82
           R L+ +  G  E    +  ++   K R +    +L   GPPG+GKT+L + +A  LG  +
Sbjct: 352 RILDRDHFGLEEVKKRVIEYLAVLKLRNDMKSPILCLYGPPGVGKTSLGKSIAEALGREY 411

Query: 83  RSTSGPVIAKAGDLA------------ALLTNLED----RDVLFIDEIHRLSIIVE---- 122
              S   +    ++              ++ +L+       V  +DEI +LS   +    
Sbjct: 412 VRISLGGMRDEAEIRGHRKTYIGALPGRIIQSLKKAGTSNPVFVLDEIDKLSNSAQGDPA 471

Query: 123 ----EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
               E+L P   +   D  +  G        +LS+   +A    +G +   L+DR  I I
Sbjct: 472 SALLEVLDPEQNESFYDNFLEMGY-------DLSKVLFVATANSLGPIHPALRDRMEI-I 523

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
            ++ Y  E+   I Q+   L    + +    +  +  +    +  +++      + V   
Sbjct: 524 NVSGYTQEEKTGIAQKF--LLPKQLKEHGMNKKQLSLKKP--VLDKIVESYTRESGVRGL 579

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMI 271
           +    +    A   +A+++      D+  LT I
Sbjct: 580 EKQVAKAVRYAAKSIAMEEEYKISPDVSDLTTI 612


>gi|254421557|ref|ZP_05035275.1| DNA polymerase III, subunits gamma and tau, putative [Synechococcus
           sp. PCC 7335]
 gi|196189046|gb|EDX84010.1| DNA polymerase III, subunits gamma and tau, putative [Synechococcus
           sp. PCC 7335]
          Length = 745

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 79/232 (34%), Gaps = 19/232 (8%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +      RP+T  +  GQ      L   +E  +         LF GP G GKT+ A+++A
Sbjct: 3   EPLHHKYRPQTFSQLVGQDAIAQTLTHALEQKRIA----PAYLFCGPRGTGKTSSARILA 58

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAME 130
           + L                D+   +      DV+ ID      +  +  ++E   +  ++
Sbjct: 59  KSLNCLSSEVPTAQPCGQCDVCQAVIQGIALDVVEIDAASNTGVDNIRELIERSQFAPVQ 118

Query: 131 DFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
                 ++ E             ++++   SR   + ATT    +   +  R        
Sbjct: 119 CRYKLYVLDEVHMLSTAAFNALLKTLEEPPSRVVFVLATTDPQRVLPTIISRCQ-RFDFR 177

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
              +  +   +   +    + +   A   +A  S+G  R A  LL ++   A
Sbjct: 178 RIPLPSMIKHLSYISAEEAIQIEPSAIQLVAQISQGGLRDAESLLDQLSLQA 229


>gi|194391228|dbj|BAG60732.1| unnamed protein product [Homo sapiens]
          Length = 893

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 72/192 (37%), Gaps = 33/192 (17%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI  ++ R      +L F GPPG+GKT++A+ +AR L   +   S
Sbjct: 423 EDHYGMEDVKKRILEFIAVSQLRGSTQGKILCFYGPPGVGKTSIARSIARALNREYFRFS 482

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE  ++    +        
Sbjct: 483 VGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLILIDEADKIGRGYQGDPSSALL 542

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V ++LS+   I        +  PL+DR  + I ++ 
Sbjct: 543 ELLDPEQNANFLD-------HYLDVPVDLSKVLFICTANVTDTIPEPLRDRMEM-INVSG 594

Query: 183 YEIEDLKTIVQR 194
           Y  ++   I +R
Sbjct: 595 YVAQEKLAIAER 606


>gi|168206716|ref|ZP_02632721.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens E str.
           JGS1987]
 gi|168211698|ref|ZP_02637323.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens B str.
           ATCC 3626]
 gi|170661854|gb|EDT14537.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens E str.
           JGS1987]
 gi|170710347|gb|EDT22529.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens B str.
           ATCC 3626]
          Length = 717

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 68/265 (25%), Positives = 106/265 (40%), Gaps = 39/265 (14%)

Query: 26  TLEEFTGQVEACSNL----------KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           T ++  GQ EA  +L          + ++E     A+     L VGPPG GKT LA+ VA
Sbjct: 164 TFKDVAGQDEAKESLVEIVDFLHDTRKYVEIG---AKLPKGALLVGPPGTGKTLLAKAVA 220

Query: 76  RELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYP 127
            E  V F S SG       V   A  +  L    E++   ++FIDEI  +    +  +  
Sbjct: 221 GEAKVPFFSMSGSDFVEMFVGMGAARVRDLFKQAEEKAPCIVFIDEIDAIGKSRDGAIQG 280

Query: 128 AME-DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ-----DRFGIPIRLN 181
             E +  L+ ++ E     S K       ++AAT R  +L   L      DR  I  R +
Sbjct: 281 NDEREQTLNQLLTEMDGFDSSKG----VVILAATNRPEVLDKALLRPGRFDRRIIVDRPD 336

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
               E++  +  R  KL      D +  EIA   + TP   G  L  + + A +   K  
Sbjct: 337 LIGREEILKVHSRDVKL----SDDVSLEEIA---KSTPGAVGADLANIVNEAALRAVKHG 389

Query: 242 TREIADAALLR-LAIDKMGFDQLDL 265
            + +    L   + +   G ++ D 
Sbjct: 390 RKFVIQEDLDEAVEVIIAGQEKRDR 414


>gi|21756162|dbj|BAC04829.1| unnamed protein product [Homo sapiens]
          Length = 895

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 73/192 (38%), Gaps = 33/192 (17%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI  ++ R      +L F GPPG+GKT++A+ +AR L   +   S
Sbjct: 425 EDHYGMEDVKKRILEFIAVSQLRGSTQGKILCFYGPPGVGKTSIARSIARALNREYFRFS 484

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ ++    +        
Sbjct: 485 VGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLILIDEVDKIGRGYQGDPSSALL 544

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V ++LS+   I        +  PL+DR  + I ++ 
Sbjct: 545 ELLDPEQNANFLD-------HYLDVPVDLSKVLFICTANVTDTIPEPLRDRMEM-INVSG 596

Query: 183 YEIEDLKTIVQR 194
           Y  ++   I +R
Sbjct: 597 YVAQEKLAIAER 608


>gi|18309580|ref|NP_561514.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens str.
           13]
 gi|168214787|ref|ZP_02640412.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens CPE
           str. F4969]
 gi|18144257|dbj|BAB80304.1| cell division protein [Clostridium perfringens str. 13]
 gi|170713759|gb|EDT25941.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens CPE
           str. F4969]
          Length = 717

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 68/265 (25%), Positives = 106/265 (40%), Gaps = 39/265 (14%)

Query: 26  TLEEFTGQVEACSNL----------KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           T ++  GQ EA  +L          + ++E     A+     L VGPPG GKT LA+ VA
Sbjct: 164 TFKDVAGQDEAKESLVEIVDFLHDTRKYVEIG---AKLPKGALLVGPPGTGKTLLAKAVA 220

Query: 76  RELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYP 127
            E  V F S SG       V   A  +  L    E++   ++FIDEI  +    +  +  
Sbjct: 221 GEAKVPFFSMSGSDFVEMFVGMGAARVRDLFKQAEEKAPCIVFIDEIDAIGKSRDGAIQG 280

Query: 128 AME-DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ-----DRFGIPIRLN 181
             E +  L+ ++ E     S K       ++AAT R  +L   L      DR  I  R +
Sbjct: 281 NDEREQTLNQLLTEMDGFDSSKG----VVILAATNRPEVLDKALLRPGRFDRRIIVDRPD 336

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
               E++  +  R  KL      D +  EIA   + TP   G  L  + + A +   K  
Sbjct: 337 LIGREEILKVHSRDVKL----SDDVSLEEIA---KSTPGAVGADLANIVNEAALRAVKHG 389

Query: 242 TREIADAALLR-LAIDKMGFDQLDL 265
            + +    L   + +   G ++ D 
Sbjct: 390 RKFVIQEDLDEAVEVIIAGQEKRDR 414


>gi|319426701|gb|ADV54775.1| DNA polymerase III, subunits gamma and tau [Shewanella putrefaciens
           200]
          Length = 984

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 51/241 (21%), Positives = 77/241 (31%), Gaps = 55/241 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQV-------- 73
           RP T E+  GQ      L   +       + L H  LF G  G+GKT+LA++        
Sbjct: 38  RPATFEQMVGQSHVLHALTNALS-----QQRLHHAYLFTGTRGVGKTSLARLFAKGLNCE 92

Query: 74  ----------------VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRD------VLFI 111
                           +A+   V+          K  D   LL N++ R       V  I
Sbjct: 93  QGVTATPCGVCGSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPTRGRFKVYLI 152

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 153 DEVHMLSRSSFNALLKTLEE------------------PPEHVKFLLATTDPQKLPVTVL 194

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L     +++ T +        L    EA   +A  + G+ R A  L  +   
Sbjct: 195 SRC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEIEALTLLAKAANGSMRDALSLTDQAIA 253

Query: 232 F 232
           F
Sbjct: 254 F 254


>gi|241889127|ref|ZP_04776431.1| Cell division protease FtsH homolog [Gemella haemolysans ATCC
           10379]
 gi|241864376|gb|EER68754.1| Cell division protease FtsH homolog [Gemella haemolysans ATCC
           10379]
          Length = 678

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 59/244 (24%), Positives = 91/244 (37%), Gaps = 19/244 (7%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKAR-------AEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  E    L   +E  K         A     VL  GPPG GKT LA+ VA E 
Sbjct: 166 TFDDVAGADEEKQELAEMVEFLKDHRKFTKMGARIPKGVLLEGPPGTGKTLLARAVAGEA 225

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  L    E     ++FIDEI  +       +    +
Sbjct: 226 KVPFFSISGSDFVEMFVGVGASRVRDLFKEAEKNAPCIIFIDEIDAVGRKRGSGVGGGND 285

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
           + +  L   +               +IAAT R  +L N L+   RF   I+++  +++  
Sbjct: 286 EREQTL--NQLLVEMDGFDGEKGIIVIAATNRADVLDNALRRPGRFDRQIKVSTPDVKGR 343

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           + I++  AK   LA   +           +      +L      A   +  +I +E  D 
Sbjct: 344 EAILKVHAKNKPLAKGVDLRSLAEKTPGFSGADLANILNEAALLAARENKSSIDKEDLDE 403

Query: 249 ALLR 252
           A+ R
Sbjct: 404 AMDR 407


>gi|242021491|ref|XP_002431178.1| proteasome-activating nucleotidase, putative [Pediculus humanus
           corporis]
 gi|212516427|gb|EEB18440.1| proteasome-activating nucleotidase, putative [Pediculus humanus
           corporis]
          Length = 581

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 51/235 (21%), Positives = 83/235 (35%), Gaps = 21/235 (8%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHV-------LFVGPPGLGKTTLAQVVARELGV 80
           ++  GQ  A   L+  +     R E    +       L  GPPG GKT LA+ VA E   
Sbjct: 307 DDIAGQHAAKQALQEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTLLARAVASECNA 366

Query: 81  NFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAMEDF 132
            F S S   +           + AL     +    ++FIDE+  L     E  + A    
Sbjct: 367 TFFSISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLCERRENEHEASRRL 426

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           + + +V       S      R  ++AAT R   L      RF   I +   +    K ++
Sbjct: 427 KTEFLVEFDGLPSSPD---ERVLVMAATNRPQELDEAALRRFSKRIYVTLPDHSTRKELL 483

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           +         ++D    E+   +  T   +G  L  +   A +   + I+ E   
Sbjct: 484 KHLLSKHDNPLSDY---ELEKLANLTVSYSGSDLTALAKDAALGPIREISAEQMK 535


>gi|74182120|dbj|BAE34094.1| unnamed protein product [Mus musculus]
          Length = 949

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 61/326 (18%), Positives = 119/326 (36%), Gaps = 65/326 (19%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI  ++ R      +L F GPPG+GKT++A+ +AR LG  +   S
Sbjct: 478 EDHYGMEDVKKRVLEFIAVSQLRGSTQGKILCFHGPPGVGKTSIARSIARALGREYFRFS 537

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ ++    +        
Sbjct: 538 VGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLVLIDEVDKIGRGYQGDPSSALL 597

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V ++LS+   I     +  +  PL+DR  + I ++ 
Sbjct: 598 ELLDPEQNANFLD-------HYLDVPVDLSKVLFICTANVIDTIPKPLRDRMEM-INVSG 649

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  ++   I +R   L   A T     E   +       A  L   ++ +   +  + + 
Sbjct: 650 YVAQEKLAIAERY--LVPQARTLCGLDESKAQLS-----AAVLTLLIKQYCRESGVRNL- 701

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           ++  +  L + A   +  +   ++      ++F G PV               +E + E 
Sbjct: 702 QKQVEKVLRKAAYKIVSGEAQTVQVTPENLQDFVGKPVF-------------TVERMYE- 747

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLG 328
                     TP G ++M +AW  +G
Sbjct: 748 ---------VTPPG-VVMGLAWTAMG 763


>gi|296274259|ref|YP_003656890.1| DNA polymerase III subunits gamma and tau [Arcobacter nitrofigilis
           DSM 7299]
 gi|296098433|gb|ADG94383.1| DNA polymerase III, subunits gamma and tau [Arcobacter nitrofigilis
           DSM 7299]
          Length = 607

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 79/227 (34%), Gaps = 51/227 (22%)

Query: 8   LSRNV-SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGL 65
           +S N  SQ+       RP+  E+  GQ      L + +++ +     L H  LF G  G 
Sbjct: 1   MSENQNSQKRVLALKYRPKRFEDLVGQGTVSQTLSLALDSNR-----LSHAYLFSGLRGS 55

Query: 66  GKTTLAQVVARE------------------------LGVNFRSTSGPVIAKAGDLAALLT 101
           GKT+ A+++A+                           ++             D+  L+ 
Sbjct: 56  GKTSTARIMAKALLCSNGPTSKPCEVCENCVSANTNRHLDIIEMDAASNRGIDDIKDLIE 115

Query: 102 NLEDRD------VLFIDEIHRLSIIVEEILYPAMED--FQLDLMVGEGPSARSVKINLS- 152
           + + +       V  IDE+H L+      L   +E+    +  ++      +     LS 
Sbjct: 116 HTKYKPSSARFKVFIIDEVHMLTTQAFNALLKTLEEPPGFVKFILATTDPLKLPATILSR 175

Query: 153 ----RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
               RF  I+    +  LT+ L +          +E E L  IV R 
Sbjct: 176 TQHFRFKKISQKDVMNHLTHILNEE------QIEFETEAL-EIVSRS 215


>gi|257867899|ref|ZP_05647552.1| DNA polymerase III [Enterococcus casseliflavus EC30]
 gi|257874228|ref|ZP_05653881.1| DNA polymerase III [Enterococcus casseliflavus EC10]
 gi|257876792|ref|ZP_05656445.1| DNA polymerase III [Enterococcus casseliflavus EC20]
 gi|257801982|gb|EEV30885.1| DNA polymerase III [Enterococcus casseliflavus EC30]
 gi|257808392|gb|EEV37214.1| DNA polymerase III [Enterococcus casseliflavus EC10]
 gi|257810958|gb|EEV39778.1| DNA polymerase III [Enterococcus casseliflavus EC20]
          Length = 577

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/259 (15%), Positives = 78/259 (30%), Gaps = 30/259 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           R +  ++  GQ      LK  I+        + H  LF GP G GKT+ A++ A+ +   
Sbjct: 15  RSQRFDDVVGQKAITQTLKNAID-----QNQISHAYLFTGPRGTGKTSAAKIFAKAINCP 69

Query: 82  -------------FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
                         RS +        ++ A   N  + ++ FI +    +    E     
Sbjct: 70  NQVNGEPCNECDMCRSITAGTQEDVIEIDAASNNGVE-EIRFIRDRANYAPTQAEYKVYI 128

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +++  +          ++++        I ATT    +   +  R            + +
Sbjct: 129 IDEVHMLSTGAFNALLKTLEEPRKNVVFILATTEPHKIPATIISRTQRFDFKRINTQDIV 188

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
                         +T       A   +   R A   +R      + A A +        
Sbjct: 189 --------GHLETVLTTSEINYEAEALQIIARAAEGGMRDALSITDQAIAFSDGTVTTQD 240

Query: 249 ALLRLAIDKMGFDQLDLRY 267
           AL       + ++ +D   
Sbjct: 241 ALEVTG--SLSYEMMDRLM 257


>gi|167523687|ref|XP_001746180.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163775451|gb|EDQ89075.1| predicted protein [Monosiga brevicollis MX1]
          Length = 323

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 73/244 (29%), Gaps = 45/244 (18%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL---- 78
           RP+T  +   Q E  + L+  +         + H LF GPPG GKT+    VARE     
Sbjct: 5   RPKTTHDVAHQSEVVAMLQKCV-----AGGDMPHTLFYGPPGTGKTSTILAVAREFFGPQ 59

Query: 79  ---------GVNFRSTSGPVIAKAGDLAALLTNLE--------DRDVLFIDEIHRLSIIV 121
                      +     G V  K  + A +  N             ++ +DE   ++   
Sbjct: 60  LMKERVLELNASDERGIGVVREKIKNFAVMTANTRVSGGYPCPPFKIILLDEADAMTEAA 119

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           +  L   +E                   N++RF        V  +  PL  R     R  
Sbjct: 120 QSALRRTIEQHS----------------NVTRF--CMVCNYVSRIIEPLASRCA-KFRFK 160

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
                 +   +Q       +   DE    I   S G  R A   L+           +T 
Sbjct: 161 PLSDATVLARLQHIRDAENVKCADEVLQTIVKVSGGDMRQAITFLQSCHRLRGDLGIETS 220

Query: 242 TREI 245
             E 
Sbjct: 221 HVED 224


>gi|156550903|ref|XP_001602630.1| PREDICTED: similar to aaa atpase [Nasonia vitripennis]
          Length = 550

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 51/231 (22%), Positives = 85/231 (36%), Gaps = 24/231 (10%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAE-------A 53
           M  R  +L   V  E+       P T ++  G   A   +K  +     R +        
Sbjct: 252 MEGRIQILKEIVETEEI------PITWDDIAGLEHAKRIIKEIVVFPMLRPDIFTGLRRP 305

Query: 54  LDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAAL--LTNLED 105
              +L  GPPG GKT + + +A +    F S S   +           + AL  +  +E 
Sbjct: 306 PKGILLFGPPGTGKTLIGKCIASQSKSTFFSISASSLTSKWVGEGEKMVRALFAVAQVEQ 365

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
             V+FIDEI  L     E  + +    + + +V    ++     +  R  +I AT R   
Sbjct: 366 PSVVFIDEIDSLLCQRSETEHESSRRMKTEFLVQLDGAS---TGDEDRILVIGATNRPYE 422

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSR 216
           L    + R    + +   E+E    IV+   K     +T +   EIA  + 
Sbjct: 423 LDEAARRRLVKRLYVPLPELEARAQIVRNLLKSERHDLTSDDVYEIAKLAD 473


>gi|21674147|ref|NP_662212.1| DNA polymerase III, gamma/tau subunit [Chlorobium tepidum TLS]
 gi|21647307|gb|AAM72554.1| DNA polymerase III, gamma and tau subunits [Chlorobium tepidum TLS]
          Length = 620

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/262 (16%), Positives = 89/262 (33%), Gaps = 25/262 (9%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP    + T Q      ++  +   +         +F G  G+GKTT A+V A+ +
Sbjct: 7   ARKYRPSRFADITAQEHITGTIQNSLRMGRVGHGY----IFSGLRGVGKTTAARVFAKAV 62

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRD------VLFIDEIHRLSII-----VEEILYP 127
                      + +  +   +  +  D D      +   D     S+       E + Y 
Sbjct: 63  NCQRMIDDPQYLKEVTEPCGVCESCRDFDAGASLNISEFDAASNNSVDDIRLLRENVRYG 122

Query: 128 AMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
             +      ++ E             ++++        I ATT +  +   +  R     
Sbjct: 123 PQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQ-RF 181

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
                 ++ ++  +++     G+    +A   IA +++G+ R A  +L +V  FA  +  
Sbjct: 182 NFKRIPLDRIQGQLRQICDAEGITADADALQLIARKAQGSMRDAQSILDQVIAFAIDSEG 241

Query: 239 KTITREIADAALLRLAIDKMGF 260
           +   R    + LL    D+  F
Sbjct: 242 ERAIRYDKVSELLSYIDDEHFF 263


>gi|124511780|ref|XP_001349023.1| cell division cycle ATPase, putative [Plasmodium falciparum 3D7]
 gi|45645005|sp|P46468|CDAT_PLAF7 RecName: Full=Putative cell division cycle ATPase
 gi|23498791|emb|CAD50861.1| cell division cycle ATPase, putative [Plasmodium falciparum 3D7]
          Length = 1229

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 46/209 (22%), Positives = 74/209 (35%), Gaps = 34/209 (16%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAE--------ALDH 56
           E  L R   +E+ D       T E+  G  +  + ++  IE      E        A   
Sbjct: 509 EEYLKREDYEENNDD-----ITYEDLGGMKKQLNKIRELIELPLKYPEIFMSIGISAPKG 563

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--V 108
           VL  G PG GKT++A+ +A E        +GP I           L  +     ++   +
Sbjct: 564 VLMHGIPGTGKTSIAKAIANESNAYCYIINGPEIMSKHIGESEQKLRKIFKKASEKTPCI 623

Query: 109 LFIDEIH---RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
           +FIDEI             L   +    L LM G   +   +        ++AAT R   
Sbjct: 624 IFIDEIDSIANKRSKSNNELEKRVVSQLLTLMDGLKKNNNVL--------VLAATNRPNS 675

Query: 166 LTNPLQD--RFGIPIRLNFYEIEDLKTIV 192
           +   L+   RF   I +   + +    I+
Sbjct: 676 IDPALRRFGRFDREIEIPVPDEQGRYEIL 704



 Score = 54.3 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 55/259 (21%), Positives = 91/259 (35%), Gaps = 25/259 (9%)

Query: 26   TLEEFTGQVEACSNLK--VFIEA------AKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
            T  +  G  E    LK  +           K  +     +L  GPPG GKT LA+ +A E
Sbjct: 932  TWNDIGGMNEVKEQLKETILYPLEYKHLYNKFNSNYNKGILLYGPPGCGKTLLAKAIANE 991

Query: 78   LGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAM 129
               NF S  GP +     G+  A + +L D+       ++F DEI  L+           
Sbjct: 992  CKANFISVKGPELLTMWFGESEANVRDLFDKARAASPCIIFFDEIDSLAKERNSN----T 1047

Query: 130  EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
             +   D ++ +  +            +IAAT R  +L   L    R    I ++  +++ 
Sbjct: 1048 NNDASDRVINQILTEIDGINEKKTIFIIAATNRPDILDKALTRPGRLDKLIYISLPDLKS 1107

Query: 188  LKTIVQRGAKLTGLAVTDEAACEIAMRSRGT--PRIAGRLLRRVRDFAEVAHAKTITREI 245
              +I +   K T L   D    ++A R+ G     I       V +  +        R+ 
Sbjct: 1108 RYSIFKAILKNTPLN-EDVDIHDMAKRTEGFSGADITNLCQSAVNEAIKETIHLLNIRKK 1166

Query: 246  ADAALLRLAIDKMGFDQLD 264
                  +   +    D  D
Sbjct: 1167 EQEEQRKKNKNSFKIDDTD 1185


>gi|325285097|ref|YP_004260887.1| anti-sigma H sporulation factor, LonB [Cellulophaga lytica DSM
           7489]
 gi|324320551|gb|ADY28016.1| anti-sigma H sporulation factor, LonB [Cellulophaga lytica DSM
           7489]
          Length = 814

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 44/190 (23%), Positives = 76/190 (40%), Gaps = 33/190 (17%)

Query: 32  GQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           G  +    +  ++   K R +    +L   GPPG GKT+L + +A  LG ++   S   +
Sbjct: 358 GLEDVKKRIIEYLAVLKLRNDMKSPILCLYGPPGTGKTSLGKSIAEALGRSYVRMSLGGL 417

Query: 91  AKAGDLA------------ALLTNLED----RDVLFIDEIHRLSIIVE--------EILY 126
               ++              +L N++       V  +DEI +LS   +        E+L 
Sbjct: 418 RDESEIRGHRKTYIGAMPGRVLKNIKKAEHSNPVFVLDEIDKLSNSHQGDPSSAMLEVLD 477

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           P   +   D  +  G        +LS+   IA    +G +   L+DR  I I ++ Y IE
Sbjct: 478 PEQNNEFYDNFLEVGY-------DLSKVMFIATANNLGAIQPALRDRMEI-INVSGYTIE 529

Query: 187 DLKTIVQRGA 196
           +   I +R  
Sbjct: 530 EKVEIAKRHL 539


>gi|327310719|ref|YP_004337616.1| AAA family ATPase [Thermoproteus uzoniensis 768-20]
 gi|326947198|gb|AEA12304.1| AAA family ATPase, possible cell division control protein cdc48
           [Thermoproteus uzoniensis 768-20]
          Length = 730

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 65/322 (20%), Positives = 114/322 (35%), Gaps = 35/322 (10%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVA 75
           P T E+     EA   ++  +E      E   H        +L  GPPG GKT LA+ VA
Sbjct: 174 PVTWEDIGDLEEAKQKIRELVELPLRHPELFKHLGIEPPKGILLFGPPGTGKTLLAKAVA 233

Query: 76  RELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYP 127
            E    F + +GP I           L  +    +     ++FIDEI  ++   EE+   
Sbjct: 234 NEANAYFIAINGPEIMSKYYGESEAKLREIFDEAKKNAPAIIFIDEIDAIAPKREEVTGE 293

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
             +     L+               +  +I AT R   +   L+   RF   I +N  + 
Sbjct: 294 VEKRVVAQLLT-----LMDGLQERGQIVVIGATNRPDAVDPALRRPGRFDREIWINPPDF 348

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL-----LRRVRDFAEVAHAKT 240
           +    I+Q   +   L+   +      M    T      L     +R +R   +      
Sbjct: 349 KGRLEILQIHTRNMPLSPDVDLRKLAEMTHGYTGADIAALAKEAAMRALRRAIQSGVVDL 408

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYL-TMIARNFGGGP-VGIETISAGLSEPRDAIED 298
               I   +L R+ +    F +     + + +       P V  + +  GL+E +  + +
Sbjct: 409 NQPTIPAESLERIKVTMQDFTEAMREIVPSALREIHIEVPKVRWKDV-GGLAEVKQELRE 467

Query: 299 LIEPYM----IQQGFIQRTPRG 316
            +E  +    + + F  R P+G
Sbjct: 468 AVEWPLKYPQMFKKFGLRPPKG 489



 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 62/251 (24%), Positives = 95/251 (37%), Gaps = 27/251 (10%)

Query: 24  PR-TLEEFTGQVEACSNLKVFIE--------AAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           P+   ++  G  E    L+  +E          K        +L  GPPG GKT LA+ V
Sbjct: 448 PKVRWKDVGGLAEVKQELREAVEWPLKYPQMFKKFGLRPPKGILLFGPPGTGKTLLAKAV 507

Query: 75  ARELGVNFRSTSGPVI--AKAGDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILY 126
           A E G NF +  GP I     G+   ++  +  +       V+FIDEI  L+        
Sbjct: 508 ATESGANFIAVRGPEIFSKWVGESEKMIREIFQKARMAAPCVVFIDEIDALASARGLGAD 567

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
             + +  +  ++ E    R+    L    +I AT R  L+   L    RF   I +   +
Sbjct: 568 SFVSERVVAQLLAEMDGIRT----LENVVVIGATNRPDLVDPALLRPGRFDRIIYVPPPD 623

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF---AEVAHAKTI 241
                 I     +   LA  D    E+A R+ G       L+ R   F    E  +AK +
Sbjct: 624 FRARLDIFLIHTRNVPLA-KDVDLEELARRTEGYSGADIELVVREATFMALREDINAKEV 682

Query: 242 TREIADAALLR 252
                +AAL +
Sbjct: 683 AMRHFEAALNK 693


>gi|124028210|ref|YP_001013530.1| ATP-dependent protease [Hyperthermus butylicus DSM 5456]
 gi|123978904|gb|ABM81185.1| ATP-dependent protease [Hyperthermus butylicus DSM 5456]
          Length = 736

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 58/287 (20%), Positives = 103/287 (35%), Gaps = 31/287 (10%)

Query: 24  PR-TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVV 74
           PR T E+  G  +    ++  +E      E            +L  GPPG+GKT LA+ +
Sbjct: 180 PRVTYEDIGGMRDIIQKVRELVELPLKHPEIFKRLGIEPPKGILLYGPPGVGKTLLAKAI 239

Query: 75  ARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILY 126
           A E    F + +GP I           L  +    +     ++FIDEI  ++   +E++ 
Sbjct: 240 ANETNAYFIAINGPEIMSKYYGESEQRLREIFEEAKKHAPAIIFIDEIDAIAPKRDEVIG 299

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
                     +V +  +      +     +IAAT R   L   L+   RF   I +   +
Sbjct: 300 EVERR-----VVAQLLALMDGLESRGDVIVIAATNRPNALDPALRRPGRFDREIEIPLPD 354

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            +    I+Q   +   LA   +      +    T      L+R     A       + R 
Sbjct: 355 KQGRLEILQIHTRNMPLAEDVDLERLAELTRGFTGADLAALVREAAMHA-------LRRY 407

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
           +    L +  I     +++++R    +A      P G+  I   + E
Sbjct: 408 LPKIDLNQDRIPPEVLEEMEIRMEDFMAALREIVPSGLREIYIEVPE 454



 Score = 53.9 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 52/246 (21%), Positives = 84/246 (34%), Gaps = 24/246 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIE--------AAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
             ++  G  EA   L+  +E          +   E    +L  GPPG GKT LA+  A E
Sbjct: 456 RWDDIGGLEEAKQQLREAVEWPLKNPDIFRRMGVEPPKGILLFGPPGTGKTLLAKAAATE 515

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM 129
            G NF +  GP I           +  +          ++F DEI  ++      +Y   
Sbjct: 516 SGANFIAVRGPEILSKWVGESEKMIREIFRKARQHAPAIIFFDEIDAIAQTR--GVYDT- 572

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                  +V +  +     + LS   +IAAT R  +L   L    RF   I +   + + 
Sbjct: 573 -SGVTYRIVNQLLAELDGIVPLSNVVVIAATNRPDILDPALLRPGRFDKIIYVPPPDTKA 631

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA--EVAHAKTITREI 245
              I++   +   LA   +           +      L+R     A  E  +A  +    
Sbjct: 632 RLEILRIHTRRMPLAEDVDLELIALRTEGYSGADLAALVREAAMLALREDINATKVHMRH 691

Query: 246 ADAALL 251
              AL 
Sbjct: 692 FLKALE 697


>gi|91774038|ref|YP_566730.1| AAA ATPase [Methanococcoides burtonii DSM 6242]
 gi|91713053|gb|ABE52980.1| AAA ATPase [Methanococcoides burtonii DSM 6242]
          Length = 371

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 52/254 (20%), Positives = 99/254 (38%), Gaps = 20/254 (7%)

Query: 26  TLEEFTGQVEACSN---LKVFIEAAKARAE-ALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           T E+  GQ  A      ++ F+E  +   + A  ++LF GP G GKT LA+ +A +  V 
Sbjct: 120 TFEDVVGQSSARQKCKLIERFLEEPEKFGKWAPRNILFFGPSGTGKTMLAKALANKTEVP 179

Query: 82  FRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAMEDFQ 133
                   +     G+ +  +  L +R       ++FIDE+  +++              
Sbjct: 180 LLPIKATQLIGEFVGEGSRHIHQLYERAEEMQPCIIFIDELDAIALDRRNQEL----RGD 235

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           +  +V    +     +       IAAT R   L   ++ RF   I     + ++   I++
Sbjct: 236 VAEIVNALLTEMDGIVERRGVCTIAATNRPNSLDPAVRSRFEEEIEFALPDEQNRYLIIE 295

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTP--RIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
           +      L V D    +IA  + G     I  ++L+     A +   + I+ +  D+ + 
Sbjct: 296 KNINTFPLPVKDIDMKKIAKLTEGLSGRDIVEKVLKTALHQAIMNDEEVISHDYFDSVIS 355

Query: 252 R--LAIDKMGFDQL 263
           +     D    D+L
Sbjct: 356 KLTKKGDTAALDRL 369


>gi|75119268|sp|Q69UZ3|LONM_ORYSJ RecName: Full=Lon protease homolog, mitochondrial; Flags: Precursor
 gi|50508109|dbj|BAD30304.1| putative ATP-dependent proteinase LON2 [Oryza sativa Japonica
           Group]
 gi|50509290|dbj|BAD30597.1| putative ATP-dependent proteinase LON2 [Oryza sativa Japonica
           Group]
          Length = 1002

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 52/254 (20%), Positives = 86/254 (33%), Gaps = 38/254 (14%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI   K R  +   ++   GPPG+GKT++ + +AR L   F   S
Sbjct: 434 EDHYGLSDVKERILEFIAVGKLRGTSQGKIICLSGPPGVGKTSIGRSIARALNRKFYRFS 493

Query: 87  GPVIAKAGDLAALLTNLED----------------RDVLFIDEIHRLSI--------IVE 122
              +A   ++                           ++ IDEI +L           + 
Sbjct: 494 VGGLADVAEIKGHRRTYVGAMPGKMVQCLKSVGTANPLVLIDEIDKLGRGHSGDPASALL 553

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V I+LS+   +     + ++ NPL DR  I     +
Sbjct: 554 ELLDPEQNVNFLD-------HYLDVPIDLSKVLFVCTANVIEMIPNPLLDRMEIIAIAGY 606

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH-AKTI 241
              E +       A+      T EA      ++  T      L+      A V +  K I
Sbjct: 607 ITDEKMH-----IARDYLEKNTREACGIKPEQAEVTDAALLALIESYCREAGVRNLQKQI 661

Query: 242 TREIADAALLRLAI 255
            +     AL  +  
Sbjct: 662 EKIYRKIALQLVRQ 675


>gi|12836291|dbj|BAB23591.1| unnamed protein product [Mus musculus]
          Length = 949

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 61/326 (18%), Positives = 119/326 (36%), Gaps = 65/326 (19%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI  ++ R      +L F GPPG+GKT++A+ +AR LG  +   S
Sbjct: 478 EDHYGMEDVKKRVLEFIAVSQLRGSTQGKILCFHGPPGVGKTSIARSIARALGREYFRFS 537

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ ++    +        
Sbjct: 538 VGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLVLIDEVDKIGRGYQGDPSSALL 597

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V ++LS+   I     +  +  PL+DR  + I ++ 
Sbjct: 598 ELLDPEQNANFLD-------HYLDVPVDLSKVLFICTANVIDTIPEPLRDRMEM-INVSG 649

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  ++   I +R   L   A T     E   +       A  L   ++ +   +  + + 
Sbjct: 650 YVAQEKLAIAERY--LVPQARTLCGLDESKAQLS-----AAVLTLLIKQYCRESGVRNL- 701

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           ++  +  L + A   +  +   ++      ++F G PV               +E + E 
Sbjct: 702 QKQVEKVLRKAAYKIVSGEAQTVQVTPENLQDFVGKPVF-------------TVERMYE- 747

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLG 328
                     TP G ++M +AW  +G
Sbjct: 748 ---------VTPPG-VVMGLAWTAMG 763


>gi|203284683|ref|YP_002222423.1| cell division protein [Borrelia duttonii Ly]
 gi|203288216|ref|YP_002223231.1| cell division protein [Borrelia recurrentis A1]
 gi|201084126|gb|ACH93717.1| cell division protein [Borrelia duttonii Ly]
 gi|201085436|gb|ACH95010.1| cell division protein [Borrelia recurrentis A1]
          Length = 636

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 68/255 (26%), Positives = 101/255 (39%), Gaps = 39/255 (15%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAK-------ARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ EA   L   +E  K         A     VL VG PG GKT LA+ VA E 
Sbjct: 171 TFKDVAGQEEAKQELGEVVEFLKYPKKFEKIGARIPKGVLLVGSPGTGKTLLAKAVAGEA 230

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GVNF   SG       V   A  +  L  N       ++FIDE+  +       L    +
Sbjct: 231 GVNFFHMSGSDFVEMFVGVGASRVRDLFDNARKNAPCIIFIDELDAVGRSRGAGLGGGHD 290

Query: 131 DFQLDL------MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNF 182
           + +  L      M G G     +        ++AAT R  +L + L    RF   + +  
Sbjct: 291 EREQTLNQLLVEMDGFGTYTNVI--------VMAATNRPDVLDSALLRPGRFDRQVAVTL 342

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMR--SRGTPRIAGRLLRRVRDFAEVAHAKT 240
            +I++ + I+   A+ T L      A EI +R  +R TP ++G  L  + +   +  A+ 
Sbjct: 343 PDIKEREAILNIHAQKTKL------AKEIDLRVIARATPGVSGADLANLINEGALIAARN 396

Query: 241 ITREIADAALLRLAI 255
              EI    L     
Sbjct: 397 NQSEILMHDLEEARD 411


>gi|125601587|gb|EAZ41163.1| hypothetical protein OsJ_25659 [Oryza sativa Japonica Group]
          Length = 1038

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 52/254 (20%), Positives = 86/254 (33%), Gaps = 38/254 (14%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI   K R  +   ++   GPPG+GKT++ + +AR L   F   S
Sbjct: 434 EDHYGLSDVKERILEFIAVGKLRGTSQGKIICLSGPPGVGKTSIGRSIARALNRKFYRFS 493

Query: 87  GPVIAKAGDLAALLTNLED----------------RDVLFIDEIHRLSI--------IVE 122
              +A   ++                           ++ IDEI +L           + 
Sbjct: 494 VGGLADVAEIKGHRRTYVGAMPGKMVQCLKSVGTANPLVLIDEIDKLGRGHSGDPASALL 553

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V I+LS+   +     + ++ NPL DR  I     +
Sbjct: 554 ELLDPEQNVNFLD-------HYLDVPIDLSKVLFVCTANVIEMIPNPLLDRMEIIAIAGY 606

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH-AKTI 241
              E +       A+      T EA      ++  T      L+      A V +  K I
Sbjct: 607 ITDEKMH-----IARDYLEKNTREACGIKPEQAEVTDAALLALIESYCREAGVRNLQKQI 661

Query: 242 TREIADAALLRLAI 255
            +     AL  +  
Sbjct: 662 EKIYRKIALQLVRQ 675


>gi|300681033|sp|A2YQ56|LONM_ORYSI RecName: Full=Lon protease homolog, mitochondrial; Flags: Precursor
 gi|125559681|gb|EAZ05217.1| hypothetical protein OsI_27415 [Oryza sativa Indica Group]
          Length = 1002

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 52/254 (20%), Positives = 86/254 (33%), Gaps = 38/254 (14%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI   K R  +   ++   GPPG+GKT++ + +AR L   F   S
Sbjct: 434 EDHYGLSDVKERILEFIAVGKLRGTSQGKIICLSGPPGVGKTSIGRSIARALNRKFYRFS 493

Query: 87  GPVIAKAGDLAALLTNLED----------------RDVLFIDEIHRLSI--------IVE 122
              +A   ++                           ++ IDEI +L           + 
Sbjct: 494 VGGLADVAEIKGHRRTYVGAMPGKMVQCLKSVGTANPLVLIDEIDKLGRGHSGDPASALL 553

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V I+LS+   +     + ++ NPL DR  I     +
Sbjct: 554 ELLDPEQNVNFLD-------HYLDVPIDLSKVLFVCTANVIEMIPNPLLDRMEIIAIAGY 606

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH-AKTI 241
              E +       A+      T EA      ++  T      L+      A V +  K I
Sbjct: 607 ITDEKMH-----IARDYLEKNTREACGIKPEQAEVTDAALLALIESYCREAGVRNLQKQI 661

Query: 242 TREIADAALLRLAI 255
            +     AL  +  
Sbjct: 662 EKIYRKIALQLVRQ 675


>gi|284165192|ref|YP_003403471.1| ATPase AAA [Haloterrigena turkmenica DSM 5511]
 gi|284014847|gb|ADB60798.1| AAA ATPase central domain protein [Haloterrigena turkmenica DSM
           5511]
          Length = 497

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 76/227 (33%), Gaps = 30/227 (13%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
                RP TL E  G  +A   L+ + E      +A   V+  G PG+GKT+ A  +A +
Sbjct: 3   WTEKYRPTTLSEVRGNNKARDKLEEWAETWDGHRDA---VIVHGSPGVGKTSAAHALAGD 59

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLED----------RDVLFIDEIHRLSIIVEEILYP 127
           +G      +      A  +  +                R ++ +DE        +     
Sbjct: 60  MGWPVMELNASDSRGADVIERIAGEASKSGTLTGGEAGRRLVILDEADNFHGNAD----- 114

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
                      G     R VK       L+A       ++  L++        +      
Sbjct: 115 ---------YGGSAEVTRVVKDANQPIVLVA--NEFYDMSQSLRNSCETIEFRDV-SKRS 162

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
           +  +++   +   +   +EA  +IA  + G  R A   L+ V + AE
Sbjct: 163 IVPVLRDICRREDVEFEEEALEKIAEDTSGDLRSAVNDLQAVAEEAE 209


>gi|254169043|ref|ZP_04875881.1| AAA family ATPase, CDC48 subfamily [Aciduliprofundum boonei T469]
 gi|197622013|gb|EDY34590.1| AAA family ATPase, CDC48 subfamily [Aciduliprofundum boonei T469]
          Length = 738

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 53/262 (20%), Positives = 88/262 (33%), Gaps = 25/262 (9%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHV--------LFVGPPGLGKTTLAQVVARELG 79
           +E     EA   LK  +E      EA   +        L  GPPG GKT LA+ VA E  
Sbjct: 465 DEVGDLEEAKRILKEAVELPLKNPEAFKRMGIRASKGILLYGPPGTGKTLLAKAVATESE 524

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMED 131
            NF S  GP +           +  +    +     ++F+DEI  ++             
Sbjct: 525 ANFISIKGPEVMSKWVGESEKAIREIFKKAKQSSPCIVFLDEIDAIAPRR----GYYGGS 580

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
              + +V +  ++      L    +IAAT R  ++   L    R    + +     E   
Sbjct: 581 GVTERIVNQLLTSMDGLTTLEGVVVIAATNRPDIVDPALLRPGRIDRIVYIEPPNEEARL 640

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            I++   K   LA               T      L R     A   +++ +  +  + A
Sbjct: 641 KILKVHTKKMPLAEDVSLEDIAMRTEFYTGADLENLCREAGMAAIRENSEKVHMKHFEEA 700

Query: 250 LLRLAIDKMGFDQLDLRYLTMI 271
           L  +       D+  ++Y   I
Sbjct: 701 LGVVHPS---LDKETIKYYESI 719



 Score = 57.8 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 82/225 (36%), Gaps = 27/225 (12%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
           T E+  G  +    ++  IE      E            VL  GPPG GKT +A+ VA E
Sbjct: 186 TYEDIGGLKDELQKVREMIELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLIAKAVANE 245

Query: 78  LGVNFRSTSGPVIAKA------GDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM 129
              +F + +GP I           L  +  N +     ++FIDEI  ++   EE+     
Sbjct: 246 SNAHFYAINGPEIMSKFYGQSEERLREIFQNAQKNAPSIIFIDEIDSIAPKREEVTGEVE 305

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                 L+       +   I      +I AT R+  +   L+   RF   I +   + + 
Sbjct: 306 RRVVAQLLTLMDGLGKRGHI-----IVIGATNRIDAVDPALRRPGRFDREIEIGIPDKKG 360

Query: 188 LKTIVQRGAKLTGL----AVTDEAACEIAMRSRGTPRIAGRLLRR 228
            K I+Q   +   +       D+   E+A  + G        L R
Sbjct: 361 RKEILQIHTRGMPIEGSPEEKDKLLEELAELTHGFVGADLAALAR 405


>gi|157961334|ref|YP_001501368.1| DNA polymerase III subunits gamma and tau [Shewanella pealeana ATCC
           700345]
 gi|157846334|gb|ABV86833.1| DNA polymerase III, subunits gamma and tau [Shewanella pealeana
           ATCC 700345]
          Length = 948

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 55/290 (18%), Positives = 85/290 (29%), Gaps = 69/290 (23%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP T E+  GQ      L   +       + L H  LF G  G+GKT+LA++ A+ L   
Sbjct: 11  RPATFEQMVGQSHVLHALTNALT-----QQRLHHAYLFSGTRGVGKTSLARLFAKGLNCE 65

Query: 82  ------------------------FRSTSGPVIAKAGDLAALLTNLEDRD------VLFI 111
                                             K  D   LL N++ R       V  I
Sbjct: 66  QGVTATPCGQCSACVEIAEGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRYKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSRSSFNALLKTLEE------------------PPEHVKFLLATTDPQRLPVTVL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L     +++   +        L   + A   +A  + G+ R A  L     D
Sbjct: 168 SRC-LQFNLKSLTQDEIGAQLNHILTAEQLTFEESALTLLAKAANGSMRDALSL----TD 222

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVG 281
            A    A  +  E     L            +D +++  +        V 
Sbjct: 223 QAIAFGAGQVKLEQVQTMLG----------SIDEKHVIALLEALAKADVM 262


>gi|85691123|ref|XP_965961.1| ATPase [Encephalitozoon cuniculi GB-M1]
 gi|74697616|sp|Q8SSJ5|CDC48_ENCCU RecName: Full=Cell division control protein 48
 gi|19068528|emb|CAD24996.1| PROTEIN OF THE CDC48/PAS1/SEC28 FAMILY OF ATPases [Encephalitozoon
           cuniculi GB-M1]
          Length = 780

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 50/242 (20%), Positives = 79/242 (32%), Gaps = 29/242 (11%)

Query: 47  AKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALL 100
           +K   +    +L  GPPG GKT +A+ +A E G      +GP I          +L    
Sbjct: 235 SKIGVKPPKGILLYGPPGTGKTLIARAIANETGAFLFLINGPEIMSKMAGESESNLRKAF 294

Query: 101 TNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMV-GEGPSARSVKINLSRFTLI 157
              E     ++FIDEI  L+   E+            L+   +G  ARS  I L      
Sbjct: 295 EEAEKNSPAIIFIDEIDALAPKREKSQGEVERRIVSQLLTLMDGMKARSNVIVL------ 348

Query: 158 AATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRS 215
            AT R   +   L+   RF   I +   +      I++   K   ++   +         
Sbjct: 349 GATNRPNSIDPALRRYGRFDREIEIGVPDETGRLEILRIHTKNMKMSEDVDLVAINKELH 408

Query: 216 RGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNF 275
             T      L                  +     L ++ +D    D   L  L + + NF
Sbjct: 409 GFTGSDLASLCSEAA------------LQQIREKLPQIDLDSEKIDAKVLASLKVNSENF 456

Query: 276 GG 277
             
Sbjct: 457 RY 458



 Score = 52.8 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 76/225 (33%), Gaps = 23/225 (10%)

Query: 28  EEFTGQVEACSNLKVFIEA--------AKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
            +  G  +    L+  ++          K        VLF GPPG GKT LA+ VA E  
Sbjct: 481 SDIGGLEQVKQELRETVQYPVEYPEKFIKFGMTPAKGVLFYGPPGCGKTLLAKAVATECK 540

Query: 80  VNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
            NF S  GP +         +   DL A         VLF DEI  ++            
Sbjct: 541 ANFISIKGPELLSMWVGESESNIRDLFARARGAAP-CVLFFDEIDSIAKARSGN---DGS 596

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
               D M+ +  S            +I AT R   L + L    R    + +   +++  
Sbjct: 597 SGATDRMLNQLLSEMDGINQKKNVFVIGATNRPDQLDSALMRPGRLDQLVYIPLPDLDSR 656

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
            +I+Q   K T L+   +         + +      + +R    A
Sbjct: 657 VSILQATLKKTPLSPEIDLRQLAEATDKFSGADLSEICQRACKLA 701


>gi|323359076|ref|YP_004225472.1| DNA polymerase III, gamma/tau subunits [Microbacterium testaceum
           StLB037]
 gi|323275447|dbj|BAJ75592.1| DNA polymerase III, gamma/tau subunits [Microbacterium testaceum
           StLB037]
          Length = 936

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 60/307 (19%), Positives = 100/307 (32%), Gaps = 30/307 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP+   E  GQ +    L   + + +         LF GP G GKTT A+++AR
Sbjct: 4   ALYRRYRPQAFGEMIGQSQVTEPLMTALRSDRVGHAY----LFSGPRGCGKTTSARILAR 59

Query: 77  ELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PA 128
            L      T  P        +L          DV+ ID      +     L       PA
Sbjct: 60  CLNCAAGPTDTPCGTCDSCVELG--RGGSGSLDVVEIDAASHNGVDDARDLRERAIFAPA 117

Query: 129 MEDFQLDLMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            + F++ ++         G     + V+   +    I ATT    +   ++ R       
Sbjct: 118 RDRFKIFILDEAHMVTQQGFNALLKLVEEPPAHVKFIFATTEPEKVLGTIRSR-THHYPF 176

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
                  +   VQ   +   ++V       +     G+PR    LL ++   A    +  
Sbjct: 177 RLVPPAAMLEYVQELCESENVSVEAGVLPLVVRAGGGSPRDTLSLLDQL--IAGSDPSTG 234

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNF-----GGGPVGIETISAGLSEPRDA 295
              E A   L+R               L  +   F     GG    ++ +     +PR  
Sbjct: 235 SDTEQAGHVLVRYERAVALLGYTHSELLDEVVDAFAANDGGGAFAAVDRVVQTGQDPRRF 294

Query: 296 IEDLIEP 302
           ++DL+E 
Sbjct: 295 VDDLLER 301


>gi|310657422|ref|YP_003935143.1| DNA polymerase III subunits gamma and tau [Clostridium sticklandii
           DSM 519]
 gi|308824200|emb|CBH20238.1| DNA polymerase III subunits gamma and tau [Clostridium sticklandii]
          Length = 552

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 49/252 (19%), Positives = 78/252 (30%), Gaps = 49/252 (19%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A   + RP +  +  GQ +  S LK  I    +        LF G  G GKT+ A+V A+
Sbjct: 8   ALYRIYRPTSFIDIVGQEQIISILKNQI----SEGSVSHAYLFSGGRGTGKTSTAKVFAK 63

Query: 77  ELGVNFRSTS--------------------GPVIAKAGDLAALLTN------LEDRDVLF 110
            +                                    ++  L  N           V  
Sbjct: 64  AVNCIDPVNQEPCHKCSVCVQGDMDIIEIDAASNNSVDNIRELRENVVYTPSYGKYKVYI 123

Query: 111 IDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           IDE+H LS      L   +E+                    S    I ATT    +   +
Sbjct: 124 IDEVHMLSQGAFNALLKTLEE------------------PPSHVIFILATTEPQKIPATV 165

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
             R          + + +  +++      GL   +EA   IA +S G  R A  LL +  
Sbjct: 166 LSRCQRFDFKKIDKNQIIARMIK-ILDELGLTYEEEAIELIAQKSDGGMRDALSLLDQAI 224

Query: 231 DFAEVAHAKTIT 242
            + E+ +   + 
Sbjct: 225 AYKELTYQNVVH 236


>gi|281207192|gb|EFA81375.1| AAA ATPase domain-containing protein [Polysphondylium pallidum
           PN500]
          Length = 801

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 45/189 (23%), Positives = 73/189 (38%), Gaps = 31/189 (16%)

Query: 20  SLLR------PR-TLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPG 64
           S +R      P+    +  GQ      LK  +E      EA           +L  GPPG
Sbjct: 539 SSMREVVVEIPKVYWSDIGGQHHIKDKLKEAVEWPLKHPEAFIRMGITPPKGILLYGPPG 598

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
             KT +A+ +A E G+NF +  GP          LLT      VLF DE+  L++     
Sbjct: 599 CSKTLMAKALATESGLNFIAVKGP---------ELLTRSNAPSVLFFDEMDGLAVKR--- 646

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNF 182
                    ++ +V +  +       L+  T+IAAT R  ++   +    R    + ++ 
Sbjct: 647 --SGEGSGAVERVVSQLLTEMDGIQPLTNVTIIAATNRPDIIDQAILRAGRIDRILYISL 704

Query: 183 YEIEDLKTI 191
            ++   K I
Sbjct: 705 PDLPSRKEI 713



 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 81/216 (37%), Gaps = 29/216 (13%)

Query: 32  GQVEACSNLKVFIEAAKARAEALD--------HVLFVGPPGLGKTTLAQVVARELGVNFR 83
           G  +    +K  IE +  +++ L          +L  GPPG GKT LA++V++E+     
Sbjct: 280 GLKKQVDQVKEMIELSFFKSDILAEFGVKPPRGILLYGPPGTGKTLLARIVSKEINSTLF 339

Query: 84  STSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAMED---F 132
           + +G  I           L ++  +   +   ++FIDE+  L    ++      +     
Sbjct: 340 TINGADILDKYYGQTEKTLQSIFKDASLKSPSIIFIDELDALCPKRDDNSTEIEKRVVGS 399

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKT 190
            L LM G            S+  +I  T R   L + L+   RF   I +     E  + 
Sbjct: 400 MLTLMDGIDSG--------SKIIVIGCTNRPDSLDSALRRPGRFDREIEIGIPNPESREE 451

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
           I++         +T     EIA R+ G        L
Sbjct: 452 ILKIFMNKIPNDLTASELTEIASRTHGFVGADLEAL 487


>gi|224123964|ref|XP_002330253.1| predicted protein [Populus trichocarpa]
 gi|222871709|gb|EEF08840.1| predicted protein [Populus trichocarpa]
          Length = 950

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 54/268 (20%), Positives = 92/268 (34%), Gaps = 40/268 (14%)

Query: 16  DADISLLRPRTL--EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQ 72
           D +  +LR + +  E+  G  +    +  FI   K R  +   ++   GPPG+GKT++ +
Sbjct: 431 DENFDVLRAQKILDEDHYGLADVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGR 490

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLED----------------RDVLFIDEIHR 116
            +AR L   F   S   ++   ++                           ++ IDEI +
Sbjct: 491 SIARSLNRKFFRFSVGGLSDVAEIKGHRRTYIGAMPGKMVQCLKNVGTANPLVLIDEIDK 550

Query: 117 LSI--------IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           L           + E+L P      LD           V I+LS+   +     V ++ N
Sbjct: 551 LGRGHAGDPASALLELLDPEQNANFLD-------HYLDVPIDLSKVLFVCTANVVDMIPN 603

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
           PL DR  +     +   E +       A+      T EA      +   T      L+  
Sbjct: 604 PLLDRMEVIAIAGYITDEKVH-----IARDYLEKATREACGIKPEQVEVTDAALLALIEN 658

Query: 229 VRDFAEVAH-AKTITREIADAALLRLAI 255
               A V +  K I +     AL  +  
Sbjct: 659 YCREAGVRNLQKHIEKIYRKIALQLVRQ 686


>gi|46581704|ref|YP_012512.1| ATP-dependent protease La, truncation [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46451127|gb|AAS97772.1| ATP-dependent protease La, truncation [Desulfovibrio vulgaris str.
           Hildenborough]
          Length = 702

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 85/230 (36%), Gaps = 41/230 (17%)

Query: 55  DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA----------------A 98
             + FVGPPG+GKT++ Q +A+ +   F   S   +    +L                 A
Sbjct: 266 PLLCFVGPPGVGKTSVGQAIAKAMNRPFVRLSLADLRDEAELRGHRRTYAGAMPGRIMQA 325

Query: 99  LLTNLEDRDVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN 150
           L T      V  +DE+ ++        ++ + E+L P   D  LD  V        +  +
Sbjct: 326 LRTAGVRNPVFMLDEMDKMGQDARSDPAMALLELLDPEQNDRFLDRYV-------DLPFD 378

Query: 151 LSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACE 210
           LS    IA       +  PL DR  + +    Y  ++   I  R   L    + +     
Sbjct: 379 LSEVMFIATANDTSRMRGPLLDRLEV-VPFAGYSEDEKADIASRF--LLPRQLREHGL-- 433

Query: 211 IAMRSRGTPRIAGRLLRR-VRDFAEVAHAKTITREIADAALLRLAIDKMG 259
                   P +A   LRR VRD+ + A  + + RE+A        +   G
Sbjct: 434 ----VHPRPVVADEALRRIVRDYTDEAGVRGLERELARLCRKLARLHMEG 479


>gi|254169220|ref|ZP_04876054.1| AAA family ATPase, CDC48 subfamily [Aciduliprofundum boonei T469]
 gi|289596750|ref|YP_003483446.1| AAA family ATPase, CDC48 subfamily [Aciduliprofundum boonei T469]
 gi|197621816|gb|EDY34397.1| AAA family ATPase, CDC48 subfamily [Aciduliprofundum boonei T469]
 gi|289534537|gb|ADD08884.1| AAA family ATPase, CDC48 subfamily [Aciduliprofundum boonei T469]
          Length = 738

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 53/262 (20%), Positives = 88/262 (33%), Gaps = 25/262 (9%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHV--------LFVGPPGLGKTTLAQVVARELG 79
           +E     EA   LK  +E      EA   +        L  GPPG GKT LA+ VA E  
Sbjct: 465 DEVGDLEEAKRILKEAVELPLKNPEAFKRMGIRASKGILLYGPPGTGKTLLAKAVATESE 524

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMED 131
            NF S  GP +           +  +    +     ++F+DEI  ++             
Sbjct: 525 ANFISIKGPEVMSKWVGESEKAIREIFKKAKQSSPCIVFLDEIDAIAPRR----GYYGGS 580

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
              + +V +  ++      L    +IAAT R  ++   L    R    + +     E   
Sbjct: 581 GVTERIVNQLLTSMDGLTTLEGVVVIAATNRPDIVDPALLRPGRIDRIVYIEPPNEEARL 640

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            I++   K   LA               T      L R     A   +++ +  +  + A
Sbjct: 641 KILKVHTKKMPLAEDVSLEDIAMRTEFYTGADLENLCREAGMAAIRENSEKVHMKHFEEA 700

Query: 250 LLRLAIDKMGFDQLDLRYLTMI 271
           L  +       D+  ++Y   I
Sbjct: 701 LGVVHPS---LDKETIKYYESI 719



 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 82/225 (36%), Gaps = 27/225 (12%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
           T E+  G  +    ++  IE      E            VL  GPPG GKT +A+ VA E
Sbjct: 186 TYEDIGGLKDELQKVREMIELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLIAKAVANE 245

Query: 78  LGVNFRSTSGPVIAKA------GDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM 129
              +F + +GP I           L  +  N +     ++FIDEI  ++   EE+     
Sbjct: 246 SNAHFYAINGPEIMSKFYGQSEERLREIFQNAQKNAPSIIFIDEIDSIAPKREEVTGEVE 305

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                 L+       +   I      +I AT R+  +   L+   RF   I +   + + 
Sbjct: 306 RRVVAQLLTLMDGLGKRGHI-----IVIGATNRIDAVDPALRRPGRFDREIEIGIPDKKG 360

Query: 188 LKTIVQRGAKLTGL----AVTDEAACEIAMRSRGTPRIAGRLLRR 228
            K I+Q   +   +       D+   E+A  + G        L R
Sbjct: 361 RKEILQIHTRGMPIEGSPEEKDKLLEELAELTHGFVGADLAALAR 405


>gi|168001966|ref|XP_001753685.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162695092|gb|EDQ81437.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 807

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 53/214 (24%), Positives = 85/214 (39%), Gaps = 30/214 (14%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIE-------AAKARAEA 53
           M +R+GLLS     +     ++      +  G  EA   L+  +E        ++  A  
Sbjct: 317 MRNRKGLLSGGGKDQGVGGPIM----FADVAGVDEAKEELEEIVEFLKHPERYSRLGARP 372

Query: 54  LDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI---------AKAGDLAALLTNLE 104
              +L VGPPG GKT LA+ VA E  V F S S             ++  DL A     E
Sbjct: 373 PRGILLVGPPGTGKTLLAKAVAGEADVPFISCSASEFVELYVGMGASRVRDLFARAKK-E 431

Query: 105 DRDVLFIDEIHRLSIIVEEILYPAMED---FQLDLMVGEGPSARSVKINLSRFTLIAATT 161
              ++FIDEI  ++   +  L     D     L+ ++ E     S     S   ++ AT 
Sbjct: 432 APSIVFIDEIDAVAKGRDGRLRSVGNDEREQTLNQLLTELDGFESS----STVIVLGATN 487

Query: 162 RVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQ 193
           R  +L   L+   RF   + +   + +  + I+ 
Sbjct: 488 RADVLDPALRRPGRFDRIVTVEPPDRQGREEILT 521


>gi|145591861|ref|YP_001153863.1| AAA family ATPase, CDC48 subfamily protein [Pyrobaculum arsenaticum
           DSM 13514]
 gi|145283629|gb|ABP51211.1| AAA family ATPase, CDC48 subfamily [Pyrobaculum arsenaticum DSM
           13514]
          Length = 737

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 60/251 (23%), Positives = 92/251 (36%), Gaps = 30/251 (11%)

Query: 28  EEFTGQVEACSNLKVFIE-AAKARA-------EALDHVLFVGPPGLGKTTLAQVVARELG 79
           ++  G       L+  +E   K R        E    +L  GPPG+GKT  A+ VA E G
Sbjct: 464 DDIGGYDAIKQELREIVEWPMKYRHYFEELGVEPPKGILLFGPPGVGKTLFAKAVATESG 523

Query: 80  VNFRSTSGPVI--AKAGDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAMED 131
            NF +  GP +     G+    +  +  +       V+F DEI  ++      L      
Sbjct: 524 ANFIAVRGPELLSKWVGESEKAIREVFKKARMAAPCVIFFDEIDSIAPARGSRLGD---S 580

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
              D MV +  +       L    ++AAT R  +L   L    RF   I +   +I+   
Sbjct: 581 GVTDRMVNQLLAEMDGIGTLKNVVVMAATNRPDILDPALLRPGRFDRIIYVPPPDIKARL 640

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSR--------GTPRIAGRLLRRVRDFAEVAHAKTI 241
            I +   K   LA  D    E+A ++            R A  L  R         AK +
Sbjct: 641 EIFKVHTKKVKLA-NDVNLEELAKKTEGYTGADIAAVVREAAMLALRETIKERSVGAKPV 699

Query: 242 TREIADAALLR 252
           + +  + AL R
Sbjct: 700 SMKHFEEALKR 710



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 49/117 (41%), Gaps = 17/117 (14%)

Query: 24  PR-TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVV 74
           PR T E+     +A   ++  +E      E   H        +L +GPPG GKT LA+ V
Sbjct: 171 PRITWEDIGDLEDAKQKIRELVELPLRHPELFKHLGIEPPKGILLIGPPGTGKTLLAKAV 230

Query: 75  ARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEE 123
           A E    F + +GP I           L  +    +     ++FIDEI  ++   EE
Sbjct: 231 ANEANAYFVAINGPEIMSKYYGESEARLREIFEEAKKNAPAIIFIDEIDAIAPKREE 287


>gi|126465619|ref|YP_001040728.1| AAA family ATPase, CDC48 subfamily protein [Staphylothermus marinus
           F1]
 gi|126014442|gb|ABN69820.1| AAA family ATPase, CDC48 subfamily [Staphylothermus marinus F1]
          Length = 738

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 60/299 (20%), Positives = 105/299 (35%), Gaps = 35/299 (11%)

Query: 24  PR-TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVV 74
           PR T E+  G       ++  +E      E            +L  GPPG GKT LA+ V
Sbjct: 185 PRVTYEDIGGMKHIVQRVRELVELPLRHPELFRRLGIEPPKGILLYGPPGTGKTLLAKAV 244

Query: 75  ARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILY 126
           A E    F + +GP I           L  +    +     ++FIDEI  ++   +E++ 
Sbjct: 245 ANEAEAYFIAINGPEIISKFYGESEQRLREIFEQAKKNAPAIIFIDEIDAIAPKRDEVMG 304

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
                     +V +  +      +     +IAAT R   L   L+   RF   I +   +
Sbjct: 305 EVERR-----VVAQLLALMDGLESRGDVIVIAATNRPNALDPALRRPGRFDREIEVPLPD 359

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            +    I+Q   +   LA   +      +    T      L++     A       + R 
Sbjct: 360 KQGRLEILQIHTRGMPLANDVDLNKLAEITHGYTGADIAALVKEAALHA-------LRRY 412

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE----PRDAIEDL 299
           + +  L    I     +++++R    +A      P G+  I   + E        +ED+
Sbjct: 413 MPEIDLESETIPVEVLEKMEVRMEDFLAAYKEIVPSGLREIYVEVPEVSWDDIGGLEDV 471



 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 53/246 (21%), Positives = 86/246 (34%), Gaps = 23/246 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
           + ++  G  +    L+  +E      E            +L  GPPG GKT LA+ VA E
Sbjct: 461 SWDDIGGLEDVKQELRRAVEWPMKYPEVFKRLGIKPPRGILLYGPPGTGKTLLAKAVATE 520

Query: 78  LGVNFRSTSGPVI--AKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAM 129
            G NF +  GP I     G+    +  +  +       V+F DEI  ++          +
Sbjct: 521 SGANFIAVRGPEILSKWVGESEKAIREIFRKARLYAPAVIFFDEIDAIAPARGYAFDSRV 580

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            +  +  ++ E          L    +IAAT R  +L   L    RF   I +   ++  
Sbjct: 581 TERIVSQLLTE----MDGINRLDNVVVIAATNRPDILDPALLRPGRFDKLIYVPPPDLNG 636

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
              I++   +   LA  D    EIA  + G        L R      +     I +    
Sbjct: 637 RIEILKIHTRNMPLA-DDVDLYEIARLTEGYSGADLEALVREAAMRALKENIEINKVYMR 695

Query: 248 AALLRL 253
             L  +
Sbjct: 696 HFLEAM 701


>gi|120611312|ref|YP_970990.1| DNA polymerase III subunits gamma and tau [Acidovorax citrulli
           AAC00-1]
 gi|120589776|gb|ABM33216.1| DNA polymerase III, subunits gamma and tau [Acidovorax citrulli
           AAC00-1]
          Length = 701

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 48/299 (16%), Positives = 81/299 (27%), Gaps = 78/299 (26%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARE 77
               RP+T  E  GQ      L   +       + L H  LF G  G+GKTT+++++A+ 
Sbjct: 34  ARKYRPKTFSEMVGQEHVVQALSNAL-----VQQRLHHAYLFTGTRGVGKTTVSRILAKS 88

Query: 78  LGVNFRSTSGPVI-----------------------------AKAGDLAALLTNL----- 103
           L        G +                                  ++  LL        
Sbjct: 89  LNCQGEDGQGGITATPCGVCQACRDIDAGRFVDYTELDAASNRGVDEVQGLLEQAVYKPV 148

Query: 104 -EDRDVLFIDEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAAT 160
                V  IDE+H L+      +   +E+    L  ++      +     LSR       
Sbjct: 149 QGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNLR 208

Query: 161 TRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPR 220
                                    E +   + R      +    +A   +A  +RG+ R
Sbjct: 209 PMA---------------------PETVLEHLTRVLARESVPAEPQALRLLARAARGSMR 247

Query: 221 IAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGP 279
            A  L     D A    +  +        L            +D  Y+  +      G 
Sbjct: 248 DALSL----TDQAIAFGSGQLQEAGVRQMLG----------SVDRSYVFRLIDALARGD 292


>gi|71280636|ref|YP_268526.1| ATP-dependent M41 family peptidase [Colwellia psychrerythraea 34H]
 gi|71146376|gb|AAZ26849.1| ATP-dependent peptidase, M41 family [Colwellia psychrerythraea 34H]
          Length = 1301

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 55/251 (21%), Positives = 89/251 (35%), Gaps = 26/251 (10%)

Query: 26   TLEEFTGQVEACSNLKVFIEAAKARAEALDHV--------LFVGPPGLGKTTLAQVVARE 77
             L++  G   A + L   IE      + L +         LF GPPG GKT LA+ VA E
Sbjct: 866  KLDDVIGLQRAKNRLLDVIE-WMKFPDKLQNFDVKIPTGFLFAGPPGTGKTFLAKAVAGE 924

Query: 78   LGVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
             G+ F S S   +          K   L ++        ++FIDEI  ++    E     
Sbjct: 925  CGLPFFSVSASELSSTIIGGSSEKIMALFSVARKYAP-SIVFIDEIDAIASQRSEDSQGN 983

Query: 129  MEDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
              +    +  ++ E     S +   S   ++AAT    LL   +    RF   I  +   
Sbjct: 984  SRERNAIVNTLLTEMDGFSSSE---SPVFVMAATNYPQLLDKAILRPGRFDETIFCDLPN 1040

Query: 185  IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
             E      ++ A+   L         +   S+G        + R   +  V   K +T E
Sbjct: 1041 SEARTIFFEKFAQKQNLQWQQSDLTALVSSSQGMSSAEIDQVLREAIYQAVGTEKPLTIE 1100

Query: 245  IADAALLRLAI 255
                 ++R+  
Sbjct: 1101 HIKQTIVRVVY 1111


>gi|260772460|ref|ZP_05881376.1| DNA polymerase III subunits gamma and tau [Vibrio metschnikovii CIP
           69.14]
 gi|260611599|gb|EEX36802.1| DNA polymerase III subunits gamma and tau [Vibrio metschnikovii CIP
           69.14]
          Length = 672

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 51/265 (19%), Positives = 82/265 (30%), Gaps = 57/265 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP T +   GQ    + L    E A  +       LF G  G+GKTT+ ++ A+ L    
Sbjct: 11  RPNTFKAVVGQAHVLTAL----ENALTQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCET 66

Query: 83  ------------------------RSTSGPVIAKAGDLAALLTNLEDRD------VLFID 112
                                            K  D   LL N++ +       V  ID
Sbjct: 67  GITATPCGQCATCKEIDQGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRFKVYLID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS      L   +E+                         + ATT    L   +  
Sbjct: 127 EVHMLSRHSFNALLKTLEE------------------PPEYVKFLLATTDPQKLPVTILS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R  +   L    +E+++  ++   +   +    ++   IA  + G+ R A  L     D 
Sbjct: 169 RC-LQFHLKPISVENIRQQLEHVLQAENVNSDSKSLAMIAHAADGSMRDALSL----TDQ 223

Query: 233 AEVAHAKTITREIADAALLRLAIDK 257
           A       I   +    L  L  D+
Sbjct: 224 AIALGNGVIEHSVVSHMLGTLDTDQ 248


>gi|113970589|ref|YP_734382.1| DNA polymerase III subunits gamma and tau [Shewanella sp. MR-4]
 gi|113885273|gb|ABI39325.1| DNA polymerase III, subunits gamma and tau [Shewanella sp. MR-4]
          Length = 1071

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 52/241 (21%), Positives = 76/241 (31%), Gaps = 55/241 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP T E+  GQ      L   +       + L H  LF G  G+GKT+LA++ A+ L   
Sbjct: 11  RPATFEQMVGQSHVLHALTNALT-----QQRLHHAYLFTGTRGVGKTSLARLFAKGLNCE 65

Query: 82  F------------------------RSTSGPVIAKAGDLAALLTNLEDRD------VLFI 111
                                             K  D   LL N++ R       V  I
Sbjct: 66  KGVTASPCGVCGSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPTRGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSRSSFNALLKTLEE------------------PPEHVKFLLATTDPQKLPVTVL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L     +++ T +Q       L    EA   +A  + G+ R A  L  +   
Sbjct: 168 SRC-LQFNLKSLTQQEIGTQLQHILTQEQLPFEHEALTLLAKAANGSMRDALSLTDQAIA 226

Query: 232 F 232
           F
Sbjct: 227 F 227


>gi|316968483|gb|EFV52755.1| putative ATPase, AAA family [Trichinella spiralis]
          Length = 869

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 46/262 (17%), Positives = 89/262 (33%), Gaps = 23/262 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
           T  +  G       L+  ++      E            VLF GPPG GKT LA+ +A E
Sbjct: 535 TWNDIGGLESVKKELQELVQYPVEHPEKYLKFGMQPSRGVLFYGPPGCGKTLLAKAIAHE 594

Query: 78  LGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAM 129
              NF S  GP +     G+  A + ++ D+       VLF DE+  ++      L  A 
Sbjct: 595 CQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCVLFFDELDSIAKARGGSLGDAA 654

Query: 130 E-----DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNF 182
                     D ++ +  +      +     +I AT R  ++   +    R    + +  
Sbjct: 655 SMEAVLGGAADRVINQILTEMDGMTSKKNVFIIGATNRPDIIDPAILRPGRLDQLVYIPL 714

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            + +    I++   + + L+   +      M    +      + +R    A   + +   
Sbjct: 715 PDEKSRVQILKAALRKSPLSNDVDLGFLAKMTHGFSGADLTEICQRACKLAIRENIEKEI 774

Query: 243 REIADAALLRLAIDKMGFDQLD 264
               +        +++  D  D
Sbjct: 775 LHEKERQKRAARGEELMEDDDD 796



 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 56/254 (22%), Positives = 90/254 (35%), Gaps = 27/254 (10%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARA--------EALDHVLFVGPPGLGKTTLAQVVARELG 79
           ++  G  +  + +K  +E              +    +L  GPPG GKT +A+ VA E G
Sbjct: 261 DDIGGCRKQLAQIKEMVELPLRHPQLFKTIGIKPPRGILLYGPPGCGKTLIARAVANETG 320

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAMED 131
             F   +GP I          +L       E     +LFIDEI  ++   E+  +  +E 
Sbjct: 321 AFFFLLNGPEIMSKLAGESESNLRKAFEECEKNAPSILFIDEIDAITPKREKT-HGEVER 379

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
             +  M+             S   +IAAT R   +   L+   RF   I +   +     
Sbjct: 380 RIVSQMLTL----MDGLKQRSHVIVIAATNRPNSIDPALRRFGRFDREIDIGIPDAIGRL 435

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            +++   K   LA  D    ++   S  T    G  L  +   A +     I  ++    
Sbjct: 436 EVLRIHTKKMRLA-EDVDLEQVHNISNETHGYVGADLASLCSEAALQQ---IREKMDLID 491

Query: 250 LLRLAIDKMGFDQL 263
           L    ID    D L
Sbjct: 492 LEDEVIDAEVLDSL 505


>gi|291386961|ref|XP_002709835.1| PREDICTED: spastin [Oryctolagus cuniculus]
          Length = 631

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 47/237 (19%), Positives = 84/237 (35%), Gaps = 21/237 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDHV-------LFVGPPGLGKTTLAQVVAREL 78
             ++  GQ  A   L+  +     R E    +       L  GPPG GKT LA+ VA E 
Sbjct: 355 KFDDIAGQELAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES 414

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAME 130
              F + S   +           + AL     +    ++FIDE+  L     E  + A  
Sbjct: 415 NATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLCERREGEHDASR 474

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
             + + ++              R  ++ AT R   L   +  RF   + ++    E  + 
Sbjct: 475 RLKTEFLIEFDG---VQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRQL 531

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           +++    L     +  +  E+A  +R T   +G  L  +   A +   + +  E   
Sbjct: 532 LLK---NLLCKQGSPLSQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVK 585


>gi|224531857|ref|ZP_03672489.1| cell division protein FtsH [Borrelia valaisiana VS116]
 gi|224511322|gb|EEF81728.1| cell division protein FtsH [Borrelia valaisiana VS116]
          Length = 635

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 56/253 (22%), Positives = 93/253 (36%), Gaps = 31/253 (12%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ E    L   +E  K         A+    VL VG PG GKT LA+ VA E 
Sbjct: 170 TFKDVAGQEEVKQELYEVVEFLKNPKKFEKIGAKIPKGVLLVGSPGTGKTLLAKAVAGEA 229

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV+F   SG       V   A  +  L  N       ++FIDE+  +       L    +
Sbjct: 230 GVSFFHMSGSDFVEMFVGVGASRVRDLFDNARKNSPCIIFIDELDAVGRSRGAGLGGGHD 289

Query: 131 DFQLDL------MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNF 182
           + +  L      M G G     +        ++AAT R  +L + L    RF   + ++ 
Sbjct: 290 EREQTLNQLLVEMDGFGTHTNVI--------VMAATNRPDVLDSALLRPGRFDRQVTVSL 341

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            +I++ + I+   +  T L+               +      L+      A   +   I 
Sbjct: 342 PDIKEREAILNIHSAKTKLSKDINLQVIARATPGASGADLANLINEGALIAARNNQDEIL 401

Query: 243 REIADAALLRLAI 255
            +  + A  ++ +
Sbjct: 402 MKDMEEARDKILM 414


>gi|169602695|ref|XP_001794769.1| hypothetical protein SNOG_04350 [Phaeosphaeria nodorum SN15]
 gi|160706232|gb|EAT88110.2| hypothetical protein SNOG_04350 [Phaeosphaeria nodorum SN15]
          Length = 1017

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 51/253 (20%), Positives = 83/253 (32%), Gaps = 28/253 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR--------- 76
           TL E T Q      L   ++++      L H+LF GPPG GKT+    +A+         
Sbjct: 649 TLSEVTAQDNTIQILSRTLQSS-----NLPHMLFYGPPGTGKTSTILALAKQLYGPELMK 703

Query: 77  ----ELGVNFRSTSGPVIAKAGDLAA-LLTNLEDRDVLFIDEIH---RLSIIVEEILYPA 128
               EL  +       V  K  D A   L+     +V+  D+     ++    ++   P 
Sbjct: 704 SRVLELNASDERGISIVRQKVKDFARQQLSVAPTYNVMTEDKDGGEAKMVRYRDKYSCPP 763

Query: 129 MEDFQLDLMVGEGPSA----RSVKINLSRFTLIAA-TTRVGLLTNPLQDRFGIPIRLNFY 183
            +   LD        A    R      SR T        V  + +PL  R     R    
Sbjct: 764 FKIIVLDEADSMTQDAQSALRRTMETYSRMTRFCLVCNYVTRIIDPLASRCS-KFRFKSL 822

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           +  +    V   AKL  + +    + E+   + G  R A   L+               +
Sbjct: 823 DQGNAVRRVDDIAKLEDVKLDAGVSEELVRVADGDLRKAITFLQSAARLVGATQTAGRKK 882

Query: 244 EIADAALLRLAID 256
           ++       + ID
Sbjct: 883 KVVVDDEDEMDID 895


>gi|114047820|ref|YP_738370.1| DNA polymerase III subunits gamma and tau [Shewanella sp. MR-7]
 gi|113889262|gb|ABI43313.1| DNA polymerase III, subunits gamma and tau [Shewanella sp. MR-7]
          Length = 1045

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 52/241 (21%), Positives = 76/241 (31%), Gaps = 55/241 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP T E+  GQ      L   +       + L H  LF G  G+GKT+LA++ A+ L   
Sbjct: 11  RPATFEQMVGQSHVLHALTNALT-----QQRLHHAYLFTGTRGVGKTSLARLFAKGLNCE 65

Query: 82  F------------------------RSTSGPVIAKAGDLAALLTNLEDRD------VLFI 111
                                             K  D   LL N++ R       V  I
Sbjct: 66  KGVTASPCGVCGSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPTRGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSRSSFNALLKTLEE------------------PPEHVKFLLATTDPQKLPVTVL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L     +++ T +Q       L    EA   +A  + G+ R A  L  +   
Sbjct: 168 SRC-LQFNLKSLTQQEIGTQLQHILTQEQLPFEHEALTLLAKAANGSMRDALSLTDQAIA 226

Query: 232 F 232
           F
Sbjct: 227 F 227


>gi|86604737|ref|YP_473500.1| FtsH family metalloprotease [Synechococcus sp. JA-3-3Ab]
 gi|86553279|gb|ABC98237.1| metalloprotease, ATP-dependent, FtsH family [Synechococcus sp.
           JA-3-3Ab]
          Length = 628

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 59/246 (23%), Positives = 88/246 (35%), Gaps = 23/246 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
             ++  G  EA   L+  +   K         A+    VL VGPPG GKT LA+ +A E 
Sbjct: 165 KFDDVAGIEEAKEELQEVVTFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA 224

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG           A  +  L    ++    ++FIDEI  +       +    +
Sbjct: 225 GVPFFSLSGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFIDEIDAVGRQRGAGIGGGND 284

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E           S   +IAAT R  +L   L    RF   I ++    +
Sbjct: 285 EREQTLNQLLTEMDGFEGN----SGVIVIAATNRPDVLDAALLRPGRFDRQITVDRPSFK 340

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
               I++  A+   LA                      LL      A     K IT +  
Sbjct: 341 GRYEILRVHARNKKLAEEVSLEAIARRTPGFAGADLANLLNEAAILAARRQHKAITNQDI 400

Query: 247 DAALLR 252
           D A+ R
Sbjct: 401 DDAIDR 406


>gi|297820436|ref|XP_002878101.1| CIP111 [Arabidopsis lyrata subsp. lyrata]
 gi|297323939|gb|EFH54360.1| CIP111 [Arabidopsis lyrata subsp. lyrata]
          Length = 1025

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 62/306 (20%), Positives = 114/306 (37%), Gaps = 42/306 (13%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFT------------GQVEACSNLKVFIEAAKAR 50
           + E  LS      +   + +RP  + E              GQ E  + L   +E  +  
Sbjct: 690 EDERTLSVGFEDFENAKTKIRPSAMREVILEVPKVNWEDVGGQNEVKNQLMEAVEWPQKH 749

Query: 51  AEAL--------DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLAALL 100
            +A           +L  GPPG  KT +A+ VA E  +NF +  GP +     G+    +
Sbjct: 750 QDAFKRIGTRPPSGILMFGPPGCSKTLMARAVASEAKLNFLAVKGPELFSKWVGESEKAV 809

Query: 101 TNLEDR------DVLFIDEIHRLS--IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152
            +L  +       ++F DEI  L+     E       +     L+V      + V     
Sbjct: 810 RSLFAKARANAPSIIFFDEIDSLASIRGKENDGVSVSDRVMSQLLVELDGLHQRVG---- 865

Query: 153 RFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACE 210
             T+IAAT R   + + L    RF   + +   +  D + I++   +    + +D    E
Sbjct: 866 -VTVIAATNRPDKIDSALLRPGRFDRLLYVGPPDEADREAILKIHLRKIPCS-SDICLKE 923

Query: 211 IAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTM 270
            A  ++G       L+   R+ A  A  +++  E      L+ AI +   +  +++    
Sbjct: 924 FASITKGYTGADISLI--CREAAIAALEESLEMEEISMRHLKAAISQ--IEPTEIQSYKA 979

Query: 271 IARNFG 276
           ++  F 
Sbjct: 980 LSEKFQ 985



 Score = 50.5 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 8/75 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--V 108
           VL  GPPG GKT+LA+  AR+ GVNF S +GP I           L  +  +  +    V
Sbjct: 424 VLIYGPPGTGKTSLARSFARDSGVNFFSVNGPEIISQYLGESEKALDEVFRSASNATPAV 483

Query: 109 LFIDEIHRLSIIVEE 123
           +FID++  ++   +E
Sbjct: 484 VFIDDLDAIAPARKE 498


>gi|262341345|ref|YP_003284200.1| DNA polymerase III subunit gamma/tau [Blattabacterium sp.
           (Blattella germanica) str. Bge]
 gi|262272682|gb|ACY40590.1| DNA polymerase III subunit gamma/tau [Blattabacterium sp.
           (Blattella germanica) str. Bge]
          Length = 501

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 59/172 (34%), Gaps = 21/172 (12%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           +++  S +       +P   +E  GQ      LK  I+  +        + F GP G+GK
Sbjct: 1   MNKVFSDKIVLADKYKPLKWDELIGQENISITLKKAIQENRLSQV----LFFFGPKGVGK 56

Query: 68  TTLAQVVARELG---------------VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID 112
            T A ++A EL                  F   S   I +  D +         ++  I 
Sbjct: 57  NTCAHILANELNSFSEFKDISLNTFEINGFFHNSLKCIHRIIDTSRYSPKRGKYNIFIIK 116

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSAR--SVKINLSRFTLIAATTR 162
           EIH+ S  V +     +E+    ++     +      +  LSR  +    + 
Sbjct: 117 EIHKFSKDVFDFFLKFIEEKHPHILFIFCGTEEKIVPEFILSRCQVYEFQSL 168


>gi|156845993|ref|XP_001645885.1| hypothetical protein Kpol_1045p11 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156116555|gb|EDO18027.1| hypothetical protein Kpol_1045p11 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 695

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 89/244 (36%), Gaps = 22/244 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
             E+  G  EA + L+  ++  K          +    +L  GPPG GKT LA+  A E 
Sbjct: 256 RFEDVCGCNEARAELEEVVDFLKNPSKYESLGGKLPKGILITGPPGTGKTLLARATAGEA 315

Query: 79  GVNFRSTSGPVIA------KAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAME 130
           GV F   SG           A  +  L T  +     ++FIDE+  + +     L PA  
Sbjct: 316 GVKFFMMSGSEFDEVYVGVGAKRIRDLFTEAKANAPAIIFIDELDAVGVRR-TTLDPAYT 374

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
              L+ ++ E           S   +I AT     L   L    RF   + ++  ++   
Sbjct: 375 KQSLNQLLVELDGFSQT----SGIIVIGATNFPEGLDKALTRPGRFDKIVNVSLPDVRGR 430

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             I++R  +   L +  +           +      L+ +   +A   +AKT+     + 
Sbjct: 431 TEILKRHMRNITLDLDVDPVILARGTPGFSGADLANLVNQAAVYACQNNAKTVNMSHFEW 490

Query: 249 ALLR 252
           +  +
Sbjct: 491 SKDK 494


>gi|145607029|ref|XP_361452.2| hypothetical protein MGG_03926 [Magnaporthe oryzae 70-15]
 gi|145014635|gb|EDJ99203.1| hypothetical protein MGG_03926 [Magnaporthe oryzae 70-15]
          Length = 618

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 59/244 (24%), Positives = 92/244 (37%), Gaps = 26/244 (10%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVARE 77
              ++  G  EA   L+  +E  K          +    VL VGPPG GKT LA+ VA E
Sbjct: 143 TRFKDVHGCEEAKEELQDLVEFLKNPDKFSSLGGKLPKGVLLVGPPGTGKTLLARAVAGE 202

Query: 78  LGVNFRSTSGPVIA------KAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
            GV F   SG           A  +  L T  +     ++FIDE+  +         P+ 
Sbjct: 203 AGVPFFYMSGSEFEEVFVGVGARRVRDLFTAAKTASPAIVFIDELDAIGGKR-NAKDPSY 261

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
               L+ ++ E           S   +IAAT     L   L    RF   ++++  +I  
Sbjct: 262 AKQTLNQLLTELDGFEQD----SGVIVIAATNFPRSLDKALTRPGRFDRHVQVDLPDIRG 317

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
              I++  A    +   D    E   RS  TP ++G  L  + + A +  +KT    ++ 
Sbjct: 318 RIAILKHHATK--IKADDNIDYEAIARS--TPGLSGAELESIVNQAAIHASKTRKTIVST 373

Query: 248 AALL 251
               
Sbjct: 374 KDFD 377


>gi|297725961|ref|NP_001175344.1| Os07g0689300 [Oryza sativa Japonica Group]
 gi|62910857|gb|AAY21162.1| putative LON3 protease [Oryza sativa Indica Group]
 gi|255678077|dbj|BAH94072.1| Os07g0689300 [Oryza sativa Japonica Group]
          Length = 976

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 52/254 (20%), Positives = 86/254 (33%), Gaps = 38/254 (14%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI   K R  +   ++   GPPG+GKT++ + +AR L   F   S
Sbjct: 434 EDHYGLSDVKERILEFIAVGKLRGTSQGKIICLSGPPGVGKTSIGRSIARALNRKFYRFS 493

Query: 87  GPVIAKAGDLAALLTNLED----------------RDVLFIDEIHRLSI--------IVE 122
              +A   ++                           ++ IDEI +L           + 
Sbjct: 494 VGGLADVAEIKGHRRTYVGAMPGKMVQCLKSVGTANPLVLIDEIDKLGRGHSGDPASALL 553

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V I+LS+   +     + ++ NPL DR  I     +
Sbjct: 554 ELLDPEQNVNFLD-------HYLDVPIDLSKVLFVCTANVIEMIPNPLLDRMEIIAIAGY 606

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH-AKTI 241
              E +       A+      T EA      ++  T      L+      A V +  K I
Sbjct: 607 ITDEKMH-----IARDYLEKNTREACGIKPEQAEVTDAALLALIESYCREAGVRNLQKQI 661

Query: 242 TREIADAALLRLAI 255
            +     AL  +  
Sbjct: 662 EKIYRKIALQLVRQ 675


>gi|228469478|ref|ZP_04054482.1| cell division protein FtsH [Porphyromonas uenonis 60-3]
 gi|228308993|gb|EEK17645.1| cell division protein FtsH [Porphyromonas uenonis 60-3]
          Length = 673

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 77/327 (23%), Positives = 123/327 (37%), Gaps = 56/327 (17%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  EA   L+  +E  K          +     L VGPPG GKT  A+ VA E 
Sbjct: 180 TFDDVAGLHEAKQELQEIVEFLKNPDKYTKLGGKIPKGALLVGPPGTGKTLFAKAVAGEA 239

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  L    +++   ++FIDEI  +     +    +  
Sbjct: 240 HVPFFSISGSDFVEMFVGVGASRVRDLFKQAKEKSPCIIFIDEIDAVGRARSKNAGFSSN 299

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
           D + + +            N S   ++AAT RV +L   L    RF   I ++  ++ D 
Sbjct: 300 DERENTLNQLLTEMDGFDGN-SGVIILAATNRVDILDKALLRAGRFDRQIYVDLPDLNDR 358

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMR-SRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           K I      L  +      A     + SR TP  +G  +  V                 +
Sbjct: 359 KEIF-----LVHMKGLKLGADVDVDQLSRQTPGFSGADIANV---------------CNE 398

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE------ 301
           AAL+    DK   ++ D  ++  + R  GG    +E  +  ++E       + E      
Sbjct: 399 AALIAARHDKQAIEKQD--FMDAVDRIIGG----LEKKNKIITEDERRSIAIHEAGHATI 452

Query: 302 PYMIQQG--FIQRT--PRGRLLMPIAW 324
            +M + G   ++ T  PRG   +  AW
Sbjct: 453 SWMTEYGNPLVKVTIVPRG-KALGAAW 478


>gi|18395372|ref|NP_565285.1| STI (STICHEL); ATP binding / DNA binding / DNA-directed DNA
           polymerase [Arabidopsis thaliana]
 gi|8980710|gb|AAF82285.1|AF264023_1 STICHEL [Arabidopsis thaliana]
 gi|20197093|gb|AAC18938.2| similar to prokaryotic DNA polymerase III gamma subunit
           [Arabidopsis thaliana]
 gi|330250491|gb|AEC05585.1| AAA-type ATPase-like protein [Arabidopsis thaliana]
          Length = 1218

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 77/223 (34%), Gaps = 23/223 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP   EE  GQ     +L      A  R+      LF GP G GKT+ A++ +  L    
Sbjct: 456 RPMFFEELIGQSIVVQSL----MNAVKRSRIAPVYLFQGPRGTGKTSTARIFSAALNCVA 511

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL-------YPAMEDFQLD 135
                P      +    ++  + +D   +D  ++        L        P        
Sbjct: 512 TEEMKP-CGYCKECNDFMSG-KSKDFWELDGANKKGADKVRYLLKNLPTILPRNSSMYKV 569

Query: 136 LMVGEGPSARS---------VKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E     S         ++  L +   I  TT +  +   +Q R    +     + +
Sbjct: 570 FVIDECHLLPSKTWLSFLKFLENPLQKVVFIFITTDLENVPRTIQSRCQKFLFDKLKDSD 629

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
            +   +++ A    L V   A   IAM + G+ R A  +L ++
Sbjct: 630 IVVR-LKKIASDENLDVDLHALDLIAMNADGSLRDAETMLEQL 671


>gi|311235340|gb|ADP88194.1| response regulator receiver protein [Desulfovibrio vulgaris RCH1]
          Length = 682

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 85/230 (36%), Gaps = 41/230 (17%)

Query: 55  DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA----------------A 98
             + FVGPPG+GKT++ Q +A+ +   F   S   +    +L                 A
Sbjct: 246 PLLCFVGPPGVGKTSVGQAIAKAMNRPFVRLSLADLRDEAELRGHRRTYAGAMPGRIMQA 305

Query: 99  LLTNLEDRDVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN 150
           L T      V  +DE+ ++        ++ + E+L P   D  LD  V        +  +
Sbjct: 306 LRTAGVRNPVFMLDEMDKMGQDARSDPAMALLELLDPEQNDRFLDRYV-------DLPFD 358

Query: 151 LSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACE 210
           LS    IA       +  PL DR  + +    Y  ++   I  R   L    + +     
Sbjct: 359 LSEVMFIATANDTSRMRGPLLDRLEV-VPFAGYSEDEKADIASRF--LLPRQLREHGL-- 413

Query: 211 IAMRSRGTPRIAGRLLRR-VRDFAEVAHAKTITREIADAALLRLAIDKMG 259
                   P +A   LRR VRD+ + A  + + RE+A        +   G
Sbjct: 414 ----VHPRPVVADEALRRIVRDYTDEAGVRGLERELARLCRKLARLHMEG 459


>gi|167383517|ref|XP_001736564.1| transitional endoplasmic reticulum ATPase [Entamoeba dispar SAW760]
 gi|165900980|gb|EDR27180.1| transitional endoplasmic reticulum ATPase, putative [Entamoeba
           dispar SAW760]
          Length = 804

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 48/182 (26%), Positives = 71/182 (39%), Gaps = 22/182 (12%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLED 105
           +    +L  GPPG GKT +A+ +A E G  F   +GP I          +L       E 
Sbjct: 233 KPPRGILLYGPPGCGKTMIARAIANETGAFFFLINGPEIMSKMAGESESNLRRAFEEAEK 292

Query: 106 RD--VLFIDEIHRLSIIVEEILYPAMEDFQLD--LMVGEGPSARSVKINLSRFTLIAATT 161
               ++FIDEI  ++    +     +E   +   L + +G  ARS  I      +IAAT 
Sbjct: 293 NSPAIIFIDEIDSIAPKR-DKSGGEVERRVVSQLLTLMDGLKARSQVI------VIAATN 345

Query: 162 RVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVT---DEAACEIAMRSR 216
           R   +   L+   RF   I L   + E  + I+Q   K   +A     D  A E      
Sbjct: 346 RPNTIDVALRRFGRFDREIDLGIPDTEGRREILQIHTKKMKIADDVDLDVLANETHGMVG 405

Query: 217 GT 218
             
Sbjct: 406 AD 407



 Score = 50.5 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 46/193 (23%), Positives = 77/193 (39%), Gaps = 21/193 (10%)

Query: 28  EEFTGQVEACSNLKVFI-------EAAKARAEALD-HVLFVGPPGLGKTTLAQVVARELG 79
           E+  G  +  S LK  +       E  K   +     VLF GPPG GKT +A+ VA E  
Sbjct: 474 EDIGGLEQTKSELKEIVQWPVLHPELFKQYGQPPSRGVLFYGPPGCGKTMMAKAVANECQ 533

Query: 80  VNFRSTSGPVIAKA--GDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAMED 131
            NF S  GP +     G+  A + N+ D+       VLF DE+  ++           + 
Sbjct: 534 ANFISVKGPELLTMWFGESEANVRNIFDKARGAAPCVLFFDELDSIAQSRGAN---NGDS 590

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
              D ++ +  +      +     +I AT R  ++   L    R    I +   ++E   
Sbjct: 591 GASDRVINQLLTEMDGMSSAKTVFIIGATNRPDIIDPALMRPGRLDQLIYIPLPDLEARV 650

Query: 190 TIVQRGAKLTGLA 202
            ++Q   + + +A
Sbjct: 651 GVLQANLRKSPVA 663


>gi|17541224|ref|NP_501860.1| Mitochondrial Sorting of Proteins (yeast MSP) in Nematode family
           member (mspn-1) [Caenorhabditis elegans]
 gi|21903441|sp|P54815|MSP1_CAEEL RecName: Full=Mitochondrial sorting homolog
 gi|14530490|emb|CAA93516.2| C. elegans protein K04D7.2a, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 342

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 48/235 (20%), Positives = 85/235 (36%), Gaps = 23/235 (9%)

Query: 28  EEFTGQVEACSNLK-----VFIEAAKARAEALD---HVLFVGPPGLGKTTLAQVVARELG 79
           +E  G  E  + LK         A+++ +  L     +L  GPPG GKT LA+ VAR  G
Sbjct: 83  DEIGGCEELVAELKDRIILPLRFASQSGSHLLSPPRGILLYGPPGCGKTLLAKAVARAAG 142

Query: 80  VNFRSTSGPVI-----AKAGDLAALLTNLEDR---DVLFIDEIHRLSIIVEEILYPAMED 131
             F +     +      ++  LAA + ++  +    ++FIDEI       +   + +   
Sbjct: 143 CRFINLQVSNLTDKWYGESQKLAAAVFSVAQKFQPTIIFIDEIDSFLRDRQSHDHESTAM 202

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
            +   M      + S      +  ++ AT R   +   +  R     ++     +    I
Sbjct: 203 MKAQFMTLWDGFSSSGD----QIIVMGATNRPRDVDAAILRRMTARFQVPVPNAKQRSQI 258

Query: 192 VQ---RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           +    R  K+       E A      S    +   RL    R  A VA   ++ +
Sbjct: 259 LNVILRNEKINNTVNLGEIAQAAEGLSGSDLKEVCRLALLARAKATVASGGSVNQ 313


>gi|264677766|ref|YP_003277672.1| DNA polymerase III subunits gamma and tau [Comamonas testosteroni
           CNB-2]
 gi|262208278|gb|ACY32376.1| DNA polymerase III, subunits gamma and tau [Comamonas testosteroni
           CNB-2]
          Length = 719

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/252 (16%), Positives = 73/252 (28%), Gaps = 64/252 (25%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARE 77
               RPRT  E  GQ      L   +       + L H  LF G  G+GKTT+++++A+ 
Sbjct: 7   ARKYRPRTFTEMVGQEHVVQALTNALT-----QQRLHHAYLFTGTRGVGKTTVSRILAKS 61

Query: 78  LGVNFRSTSGPVI-----------------------------AKAGDLAALLTNL----- 103
           L       +G +                                  ++ +LL        
Sbjct: 62  LNCQGLDGNGGITATPCGVCAACTEIDSGRFPDYTELDAASNRGVDEVQSLLEQAVYKPV 121

Query: 104 -EDRDVLFIDEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAAT 160
                V  IDE+H L+      +   +E+    L  ++      +     LSR       
Sbjct: 122 QGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNLR 181

Query: 161 TRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPR 220
                                    E +   +        +    +A   ++  +RG+ R
Sbjct: 182 PMA---------------------PETVLEHLTHVLDKESVPAEPQALRLLSRAARGSMR 220

Query: 221 IAGRLLRRVRDF 232
            A  L  +   F
Sbjct: 221 DALSLTDQAIAF 232


>gi|270010589|gb|EFA07037.1| hypothetical protein TcasGA2_TC010011 [Tribolium castaneum]
          Length = 625

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 51/253 (20%), Positives = 86/253 (33%), Gaps = 17/253 (6%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHV-------LFVGPPGLGKTTLAQVVARELGV 80
           E+  GQ  A   L+  +     R E    +       L  GPPG GKT LA+ VA E   
Sbjct: 350 EDIIGQDAAKQALQEMVILPSLRPELFTGLRTPARGLLLFGPPGNGKTLLARAVATECRA 409

Query: 81  NFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAMEDF 132
            F S S   +           + AL     +    ++FIDE+  L        + A    
Sbjct: 410 TFFSISAASLTSKYVGEGEKMVRALFAIARELQPSIIFIDEVDSLLSERSNNEHEASRRL 469

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           + + +V       +   +  R  ++AAT R   L      RF   + +   ++E    + 
Sbjct: 470 KTEFLVEFDGLPSNP--DSERVVVMAATNRPQELDEAALRRFPKRVYVTLPDLETRIRLF 527

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           +      G ++T +    +A  + G        L +      +   +    +  D + LR
Sbjct: 528 KMLLAKQGCSLTQQELKRLATLTEGYSASDLTALAKDAALGPIRELQPEQVKEMDPSALR 587

Query: 253 LAIDKMGFDQLDL 265
                   D L  
Sbjct: 588 SITINDFLDSLKR 600


>gi|94994608|ref|YP_602706.1| DNA polymerase III subunit gamma/tau [Streptococcus pyogenes
           MGAS10750]
 gi|94548116|gb|ABF38162.1| DNA polymerase III subunit gamma/tau [Streptococcus pyogenes
           MGAS10750]
          Length = 135

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 54/133 (40%), Gaps = 13/133 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     R +T +E  GQ    + LK  +E+ K     + H  LF GP G GKT+ A++ A
Sbjct: 4   ALYRKYRSQTFDEMVGQSVISTTLKQAVESGK-----ISHAYLFSGPRGTGKTSAAKIFA 58

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAME 130
           + +    +    P      D+   +TN    DV+ ID      +  +  I ++  Y    
Sbjct: 59  KAMNCPNQVDGEPCNQC--DICRDITNGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSR 116

Query: 131 DFQLDLMVGEGPS 143
                 ++ EG  
Sbjct: 117 ATYKVYIIDEGSH 129


>gi|15922918|ref|NP_378587.1| cell division control protein [Sulfolobus tokodaii str. 7]
 gi|15623709|dbj|BAB67696.1| 700aa long hypothetical cell division control protein [Sulfolobus
           tokodaii str. 7]
          Length = 700

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 68/186 (36%), Gaps = 23/186 (12%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
           TL++  G  +    L   +E A  + E            VL  GPPG GKT +A+ +A  
Sbjct: 168 TLDDVGGLSKQIRELLEIVELALTKVEVARMLGLRPPKGVLLYGPPGTGKTLIAKAIANT 227

Query: 78  LGVNFRSTSGPVIAKA------GDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM 129
           +  NF   SGP I           L  +    E     ++F+DEI  ++           
Sbjct: 228 IMANFFYISGPEIGSKYYGESEKRLRDIFEQAEKNAPSIIFVDEIDAIAPNR-----DTT 282

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                  +V +  +      + S   +I AT R   L   L+   RF   I +   + + 
Sbjct: 283 SSETDRRIVAQLLTLMDGLTSGSGVVVIGATNRPNALDPALRRPGRFDREIEIPVPDKQG 342

Query: 188 LKTIVQ 193
              I++
Sbjct: 343 RLEILK 348



 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 16/113 (14%)

Query: 25  RTLEEFTGQVEACSNLKVFIE--------AAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
            T E+  G  +    LK  +E          + +AE    +L  GPPG GKT LA+ VA 
Sbjct: 428 TTWEDIVGLEDIKLELKEVVEWPLKDPGLYEEMKAEIPSGILLYGPPGTGKTMLARAVAH 487

Query: 77  ELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIV 121
           E G NF + +GP +           +  +          ++F DEI  +++  
Sbjct: 488 ESGANFIAINGPELMSMWVGETERAIREVFKKARQSSPTIIFFDEIDAIAVAR 540


>gi|328471584|gb|EGF42463.1| Holliday junction DNA helicase RuvB [Lactobacillus rhamnosus MTCC
          5462]
          Length = 64

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 2/60 (3%)

Query: 3  DREGLLSRNVS--QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
          +++ L+S ++    E      LRPR L ++ GQ      L V+I AAK R E+LDHVL  
Sbjct: 5  NKDRLVSGDIDDLNEAQIEKSLRPRRLAQYIGQDRVKHQLTVYITAAKQREESLDHVLLY 64


>gi|238486048|ref|XP_002374262.1| intermembrane space AAA protease IAP-1 [Aspergillus flavus
           NRRL3357]
 gi|220699141|gb|EED55480.1| intermembrane space AAA protease IAP-1 [Aspergillus flavus
           NRRL3357]
          Length = 624

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 54/247 (21%), Positives = 87/247 (35%), Gaps = 22/247 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G  EA   L+  +E        +    +    VL VGPPG GKT LA+ VA E 
Sbjct: 151 RFTDVHGCDEAKEELQELVEFLLNPERFSSLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 210

Query: 79  GVNFRSTSGPVIA------KAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAME 130
           GV F   SG           A  +  L T    +   ++FIDE+  +     E    A  
Sbjct: 211 GVPFFYMSGSEFDEVYVGVGAKRVRELFTQARSKAPAIIFIDELDAIGAKRNER-DAAYV 269

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
              L+ ++ E           S   +IAAT    LL   L    RF   + ++  ++   
Sbjct: 270 KQTLNQLLTELDGFSQT----SGVIIIAATNYPQLLDKALTRPGRFDRRVVVDLPDVRGR 325

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             I++   K   ++   + A         +      L+ +   FA       +     D 
Sbjct: 326 MDILRHHMKDVQISTDVDVAVIARGTPGFSGADLENLVNQAAIFASRNKQAKVGPRDFDW 385

Query: 249 ALLRLAI 255
           A  ++ +
Sbjct: 386 AKDKIMM 392


>gi|213691081|ref|YP_002321667.1| DNA polymerase III, subunits gamma and tau [Bifidobacterium longum
           subsp. infantis ATCC 15697]
 gi|213522542|gb|ACJ51289.1| DNA polymerase III, subunits gamma and tau [Bifidobacterium longum
           subsp. infantis ATCC 15697]
 gi|320457137|dbj|BAJ67758.1| DNA polymerase III gamma and tau subunits [Bifidobacterium longum
           subsp. infantis ATCC 15697]
          Length = 923

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 57/282 (20%), Positives = 93/282 (32%), Gaps = 28/282 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     RP T E   GQ +    L   ++  K     L H  LF GP G GKT+ A+++A
Sbjct: 4   ALYRRYRPDTFEGVIGQDQVTVPLMRALDEGK-----LTHAYLFSGPRGCGKTSSARILA 58

Query: 76  RELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------P 127
           R +      TS P        DLA         DV+ ID      +     L       P
Sbjct: 59  RCVNCAKGPTSHPCGECESCKDLA--TGGPGSIDVVEIDAASHNGVDDARELRERAGFAP 116

Query: 128 AMEDFQLDLMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR---FGI 176
           A + +++ ++         G     + V+        + ATT    +   ++ R   +  
Sbjct: 117 ARDRYKIFILDEAHMVTQQGFNALLKIVEEPPEHVMFVFATTEPDKVIGTIRSRTHHYPF 176

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
            +         L+TI  +        V   A        R T  +  +L+    +     
Sbjct: 177 RLVPQEVMGPYLETICDKEGIKPEPGVLKLAMRAGGGSMRDTLSVLDQLMVGSVEGVITH 236

Query: 237 HAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
            A          AL+  A+D +  +        +I +   GG
Sbjct: 237 DAAVALLGFTPEALIGEAVDAV-INHNGEALYGVIQKVVVGG 277


>gi|116089322|ref|NP_083058.2| lon protease homolog, mitochondrial precursor [Mus musculus]
 gi|118573575|sp|Q8CGK3|LONM_MOUSE RecName: Full=Lon protease homolog, mitochondrial; AltName:
           Full=Lon protease-like protein; Short=LONP; AltName:
           Full=Mitochondrial ATP-dependent protease Lon; AltName:
           Full=Serine protease 15; Flags: Precursor
 gi|74213600|dbj|BAE35606.1| unnamed protein product [Mus musculus]
 gi|162317882|gb|AAI56651.1| Lon peptidase 1, mitochondrial [synthetic construct]
          Length = 949

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 61/326 (18%), Positives = 119/326 (36%), Gaps = 65/326 (19%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI  ++ R      +L F GPPG+GKT++A+ +AR LG  +   S
Sbjct: 478 EDHYGMEDVKKRVLEFIAVSQLRGSTQGKILCFHGPPGVGKTSIARSIARALGREYFRFS 537

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ ++    +        
Sbjct: 538 VGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLVLIDEVDKIGRGYQGDPSSALL 597

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V ++LS+   I     +  +  PL+DR  + I ++ 
Sbjct: 598 ELLDPEQNANFLD-------HYLDVPVDLSKVLFICTANVIDTIPEPLRDRMEM-INVSG 649

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  ++   I +R   L   A T     E   +       A  L   ++ +   +  + + 
Sbjct: 650 YVAQEKLAIAERY--LVPQARTLCGLDESKAQLS-----AAVLTLLIKQYCRESGVRNL- 701

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           ++  +  L + A   +  +   ++      ++F G PV               +E + E 
Sbjct: 702 QKQVEKVLRKAAYKIVSGEAQTVQVTPENLQDFVGKPVF-------------TVERMYE- 747

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLG 328
                     TP G ++M +AW  +G
Sbjct: 748 ---------VTPPG-VVMGLAWTAMG 763


>gi|74187378|dbj|BAE36666.1| unnamed protein product [Mus musculus]
          Length = 949

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 61/326 (18%), Positives = 119/326 (36%), Gaps = 65/326 (19%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI  ++ R      +L F GPPG+GKT++A+ +AR LG  +   S
Sbjct: 478 EDHYGMEDVKKRVLEFIAVSQLRGSTQGKILCFHGPPGVGKTSIARSIARALGREYFRFS 537

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ ++    +        
Sbjct: 538 VGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLVLIDEVDKIGRGYQGDPSSALL 597

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V ++LS+   I     +  +  PL+DR  + I ++ 
Sbjct: 598 ELLDPEQNANFLD-------HYLDVPVDLSKVLFICTANVIDTIPEPLRDRMEM-INVSG 649

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  ++   I +R   L   A T     E   +       A  L   ++ +   +  + + 
Sbjct: 650 YVAQEKLAIAERY--LVPQARTLCGLDESKAQLS-----AAVLTLLIKQYCRESGVRNL- 701

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           ++  +  L + A   +  +   ++      ++F G PV               +E + E 
Sbjct: 702 QKQVEKVLRKAAYKIVSGEAQTVQVTPENLQDFVGKPVF-------------TVERMYE- 747

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLG 328
                     TP G ++M +AW  +G
Sbjct: 748 ---------VTPPG-VVMGLAWTAMG 763


>gi|71005554|ref|XP_757443.1| hypothetical protein UM01296.1 [Ustilago maydis 521]
 gi|46096926|gb|EAK82159.1| hypothetical protein UM01296.1 [Ustilago maydis 521]
          Length = 878

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 60/241 (24%), Positives = 92/241 (38%), Gaps = 23/241 (9%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVAR 76
             L +  G   A   +   I       E   H        VL  GPPG GKT LA  VA 
Sbjct: 148 TRLADLGGISHAIEKILELIAMPLCHPEIYAHTGVKPPRGVLLHGPPGCGKTMLAGAVAG 207

Query: 77  ELGVNFRSTSGP--VIAKAGDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPA 128
           ELGV F S S P  V   +G+    + +  D        +LFIDEI  ++    E     
Sbjct: 208 ELGVPFLSISAPSVVSGTSGESEKTIRDTFDEAASIAPCILFIDEIDAITPKR-ETAQRE 266

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           ME   +  ++         K +     +I AT R   L   L+   RF   I +   + +
Sbjct: 267 MERRIVAQLLTSLDDLSWEKTDGKPVMIIGATNRPDSLDPALRRAGRFDHEIAMGVPDED 326

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++  A+   LA       +    ++ TP   G  L  +   A +   K I ++++
Sbjct: 327 GREQILRVLAQKLRLAGD----FDFRALAKSTPGYVGADLTALTSAAGIIAVKRIFQQLS 382

Query: 247 D 247
           +
Sbjct: 383 E 383



 Score = 47.0 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 34/81 (41%), Gaps = 8/81 (9%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR 106
           A   VL  GPPG GKT LA+ VA E   NF S  GP +           +  +       
Sbjct: 593 ASSGVLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESEKAVRQVFARARTS 652

Query: 107 D--VLFIDEIHRLSIIVEEIL 125
              V+F DE+  L    ++ L
Sbjct: 653 SPCVIFFDELDALVPRRDDSL 673


>gi|120601143|ref|YP_965543.1| response regulator receiver protein [Desulfovibrio vulgaris DP4]
 gi|120561372|gb|ABM27116.1| response regulator receiver protein [Desulfovibrio vulgaris DP4]
          Length = 682

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 85/230 (36%), Gaps = 41/230 (17%)

Query: 55  DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA----------------A 98
             + FVGPPG+GKT++ Q +A+ +   F   S   +    +L                 A
Sbjct: 246 PLLCFVGPPGVGKTSVGQAIAKAMNRPFVRLSLADLRDEAELRGHRRTYAGAMPGRIMQA 305

Query: 99  LLTNLEDRDVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN 150
           L T      V  +DE+ ++        ++ + E+L P   D  LD  V        +  +
Sbjct: 306 LRTAGVRNPVFMLDEMDKMGQDARSDPAMALLELLDPEQNDRFLDRYV-------DLPFD 358

Query: 151 LSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACE 210
           LS    IA       +  PL DR  + +    Y  ++   I  R   L    + +     
Sbjct: 359 LSEVMFIATANDTSRMRGPLLDRLEV-VPFAGYSEDEKADIASRF--LLPRQLREHGL-- 413

Query: 211 IAMRSRGTPRIAGRLLRR-VRDFAEVAHAKTITREIADAALLRLAIDKMG 259
                   P +A   LRR VRD+ + A  + + RE+A        +   G
Sbjct: 414 ----VHPRPVVADEALRRIVRDYTDEAGVRGLERELARLCRKLARLHMEG 459


>gi|11467752|ref|NP_050804.1| cell division protein [Guillardia theta]
 gi|6016057|sp|O78516|FTSH_GUITH RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|3603077|gb|AAC35738.1| hypothetical chloroplast RF25 [Guillardia theta]
          Length = 631

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 61/274 (22%), Positives = 100/274 (36%), Gaps = 23/274 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  EA    +  +   K         A+    VL VGPPG GKT LA+ +A E 
Sbjct: 171 TFNDVAGVDEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA 230

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG           A  +  L    ++    ++FIDEI  +       +    +
Sbjct: 231 GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENSPCIVFIDEIDAVGRQRGTGIGGGND 290

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E               +IAAT RV +L   L    RF   + ++  +++
Sbjct: 291 EREQTLNQLLTEMDGFEGNTG----IIIIAATNRVDVLDAALLRPGRFDRQVTVDVPDVK 346

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
               I+   A+   L ++             +      LL            K IT    
Sbjct: 347 GRLEILNVHARNKKLDLSISLELIAKRTPGFSGADLANLLNEAAILTARRRKKQITISEI 406

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV 280
           DA++ R+     G   +D +   +IA +  G  +
Sbjct: 407 DASIDRVIAGMEGKALVDSKTKRLIAYHEVGHAI 440


>gi|307265710|ref|ZP_07547262.1| protein of unknown function DUF815 [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306919224|gb|EFN49446.1| protein of unknown function DUF815 [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 441

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/219 (19%), Positives = 83/219 (37%), Gaps = 12/219 (5%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKA--RAEALDHVLFVGP 62
              ++ N S +   I  + P T E+  G        K+ IE  KA  +    ++VL  G 
Sbjct: 197 FRWVTENGSGQLKGIENVDPITFEDLIGYE---EEHKIVIENMKAFLKGFPANNVLLYGD 253

Query: 63  PGLGKTTLAQVVAREL---GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            G GK++  + +  E    G+     +   + +   +  ++ +   + +LF D++     
Sbjct: 254 KGTGKSSTVKALLNEFYKEGLRLIEINKNDVKELSYIIDIIKDRGMKFILFFDDLSFDES 313

Query: 120 IVEEILYPAMEDFQLDL----MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
             E     ++ +  +++    +V    S R   +  +        T        L DRFG
Sbjct: 314 EAEYKELKSVLEGGVEILPSNVVIYATSNRRHIVTENIEDNELHNTDAREEKLSLSDRFG 373

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMR 214
           I I       E+   IV+R A+   + +      E A++
Sbjct: 374 ITITFVTPSQEEYLKIVKRLAQKYNIEIEWNFLKEKALQ 412


>gi|299830570|ref|YP_003735018.1| cell division protein FtsH-like protein [Durinskia baltica]
 gi|297384934|gb|ADI40233.1| cell division protein FtsH-like protein [Durinskia baltica]
          Length = 625

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 66/299 (22%), Positives = 105/299 (35%), Gaps = 31/299 (10%)

Query: 23  RPRT---LEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQ 72
           RP T    ++  G  EA +  +  +   K         A+    VL VGPPG GKT LA+
Sbjct: 174 RPDTGISFDDIAGIDEAKAEFEEIVSFLKEPERYTLVGAKIPKGVLLVGPPGTGKTLLAK 233

Query: 73  VVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEI 124
            +A E  V F S +G           A  +  L     +    ++FIDEI  +       
Sbjct: 234 AIANEASVPFYSVAGSEFVEMFIGIGAARIRDLFKKASENTPCIVFIDEIDAVGRERGAG 293

Query: 125 LYPAMEDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRL 180
           +    ++ +  L  ++ E    +  K       ++ AT RV +L   L    RF   I +
Sbjct: 294 IGGGNDEREQTLNQLLTEMDGFKENKG----VIVVGATNRVDILDAALLRPGRFDRQITV 349

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
              +      I++  A+   L+               +      LL      A      T
Sbjct: 350 GLPDRLGRLAILKVHARNKPLSPDVSLVQLANRTPGFSGADLANLLNESAILATRYKKTT 409

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           IT+   + A  R+     G    D +   +IA +  G       I   L E  D +E +
Sbjct: 410 ITKNEVNEAADRIIGGIAGSAMEDTKNKKLIAYHEVGH-----AIVGSLLENHDDVEKV 463


>gi|291002133|ref|XP_002683633.1| predicted protein [Naegleria gruberi]
 gi|284097262|gb|EFC50889.1| predicted protein [Naegleria gruberi]
          Length = 351

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/240 (17%), Positives = 75/240 (31%), Gaps = 45/240 (18%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           + + S     I   RP  L +     E  S ++  I+  K     L H+L  GPPG GKT
Sbjct: 5   NSSSSDAKMWIEKYRPHELTDLLSHTEIISTIQRLIDGGK-----LPHLLLYGPPGTGKT 59

Query: 69  TLAQVVAR------------ELGVNFRSTSGPVIAKAGDLA-----ALLTNLEDRD---- 107
           +    +A+            EL  +       +  +  D A        T  +D      
Sbjct: 60  STVLAIAKKLFGNRLTQNVLELNASDDRGIDVIRNEIKDFASTKGLKFFTAQKDTTPDIK 119

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           ++ +DE  +++   +  L   +E +                              V  + 
Sbjct: 120 LIILDEADQMTKDAQAALRRTIEKYS------------------KNVRFCLICNYVNKII 161

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             LQ R     R +  +  ++ + ++   K   +         I   S G  R    +L+
Sbjct: 162 PALQSRC-TRFRFSPLKKHEVVSRLEEICKEENVIYNQVGLDAIYRLSNGDMRKCVNILQ 220


>gi|258567738|ref|XP_002584613.1| cell division protein ftsH [Uncinocarpus reesii 1704]
 gi|237906059|gb|EEP80460.1| cell division protein ftsH [Uncinocarpus reesii 1704]
          Length = 826

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 55/236 (23%), Positives = 90/236 (38%), Gaps = 26/236 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G  EA   L+  +E        +    +    VL VGPPG GKT LA+ VA E 
Sbjct: 360 RFSDVHGCDEAKDELQELVEFLSNPERFSSLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 419

Query: 79  GVNFRSTSGPVIA------KAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAME 130
           GV F   SG           A  +  L      +   ++FIDE+  +     E    A  
Sbjct: 420 GVPFFYMSGSEFDEIYVGVGAKRVRELFNQARGKAPAIIFIDELDAIGAKRNER-DAAYV 478

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
              L+ ++ E           S   ++AAT    LL   L    RF   + +   ++   
Sbjct: 479 KQTLNQLLTELDGFSQS----SGVIILAATNYPQLLDKALTRPGRFDRKVVVGLPDVRGR 534

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
             I++   K   ++   +AA    + +RGT   +G  L  + + A V  ++   ++
Sbjct: 535 VDILKHHMKNVQISTDVDAA----VIARGTSGFSGADLENLVNQAAVHASRHKKQK 586


>gi|189239513|ref|XP_975553.2| PREDICTED: similar to spastin CG5977-PA [Tribolium castaneum]
          Length = 690

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 51/253 (20%), Positives = 86/253 (33%), Gaps = 17/253 (6%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHV-------LFVGPPGLGKTTLAQVVARELGV 80
           E+  GQ  A   L+  +     R E    +       L  GPPG GKT LA+ VA E   
Sbjct: 415 EDIIGQDAAKQALQEMVILPSLRPELFTGLRTPARGLLLFGPPGNGKTLLARAVATECRA 474

Query: 81  NFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAMEDF 132
            F S S   +           + AL     +    ++FIDE+  L        + A    
Sbjct: 475 TFFSISAASLTSKYVGEGEKMVRALFAIARELQPSIIFIDEVDSLLSERSNNEHEASRRL 534

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           + + +V       +   +  R  ++AAT R   L      RF   + +   ++E    + 
Sbjct: 535 KTEFLVEFDGLPSNP--DSERVVVMAATNRPQELDEAALRRFPKRVYVTLPDLETRIRLF 592

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           +      G ++T +    +A  + G        L +      +   +    +  D + LR
Sbjct: 593 KMLLAKQGCSLTQQELKRLATLTEGYSASDLTALAKDAALGPIRELQPEQVKEMDPSALR 652

Query: 253 LAIDKMGFDQLDL 265
                   D L  
Sbjct: 653 SITINDFLDSLKR 665


>gi|189204564|ref|XP_001938617.1| cell division cycle protein 48 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187985716|gb|EDU51204.1| cell division cycle protein 48 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 743

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 58/275 (21%), Positives = 93/275 (33%), Gaps = 43/275 (15%)

Query: 16  DADISLLRPRTLEE------------FTGQVEACSNL-----KVF----IEAAKARAEAL 54
           DA +  +RP  L++              G     + L     + F    ++      ++ 
Sbjct: 451 DAVMECVRPTVLKDSILEVPKVRWTDIAGLDHVRAVLEAITIRPFKYPDLDVKFGGPQSR 510

Query: 55  DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD----- 107
             VL  GPPG  KT +AQ VA E   NF +  G  + K   G+    + ++  R      
Sbjct: 511 KGVLLYGPPGCAKTLIAQAVATESKQNFLAVKGSELIKMYVGESERAIRDVFRRARAAKP 570

Query: 108 -VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
            ++F DEI  +    E+     +      L   +G  A      L    +I AT R  +L
Sbjct: 571 CIIFFDEIDSIGKSREKTQDSGLNVVTTLLNEMDGIEA------LKDVFIIGATNRPDIL 624

Query: 167 TNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGL-AVTDEAACEIAMRSRGTPRIAG 223
            + L    RF   + +     E  K I+Q   +   L    D  A            I+G
Sbjct: 625 DSALIRTGRFDAHMHIGLPTEEARKQILQIHTRKRPLAPDVDLDAVAKKTEGSSGADISG 684

Query: 224 RLLRRVRDF-----AEVAHAKTITREIADAALLRL 253
                V        AE  +   +     + AL + 
Sbjct: 685 LCAVAVELAITDYTAEPNNEPQVHMRHFEQALQQH 719


>gi|157110895|ref|XP_001651297.1| spermatogenesis associated factor [Aedes aegypti]
 gi|108883898|gb|EAT48123.1| spermatogenesis associated factor [Aedes aegypti]
          Length = 735

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 55/258 (21%), Positives = 105/258 (40%), Gaps = 32/258 (12%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKARAEA--------LDHVLFVGPPGLGKTTLAQVVAR 76
           +TL+   G  E    L++ +     R EA        L  +L  GPPG  KTT+A+ +A 
Sbjct: 456 QTLDSIGGMDELKKVLRISVLGPLRRPEAFRRFGMSPLKGILLYGPPGCAKTTIAKCLAA 515

Query: 77  ELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DVLFIDEIHRL--SIIVEEILY 126
           E  + F S S   +     GD   L+  L ++       V+F+DEI  L  +  ++ +  
Sbjct: 516 ESRMTFVSVSAAEVYSPYVGDSEKLIAKLFNQARLSAPAVIFLDEIDSLVGNRGMQGVRT 575

Query: 127 PAMEDFQLDLMVGE-------GPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIP 177
             +    L  ++ E         S+    ++     +IAAT R  ++ + L    R    
Sbjct: 576 NDVHIRVLSTLLTEMDGIGSSVQSSIGSSVDSKNILVIAATNRPDMIDDALLRPGRLTKL 635

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
           I +   +      I+++ +++  LA       ++   ++ T R +G  L+ +   A + H
Sbjct: 636 IHVPAPDETARFEILKKVSEVVPLAQD----VDLVELAKQTVRYSGADLQNLCSQAAL-H 690

Query: 238 AKTITREIADAALLRLAI 255
           A  +  ++   A+     
Sbjct: 691 AAALDEDVQKVAMEHFQH 708



 Score = 37.7 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 46/197 (23%), Positives = 75/197 (38%), Gaps = 20/197 (10%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLED 105
           KA     +++L  GPPG GK++L   +AR+         G    K   G+    L  + +
Sbjct: 218 KALGRGSENILIAGPPGSGKSSLIAELARDGNHPVFEVRGLDFIKSHPGETELELRKIFE 277

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFT---------- 155
           R + F    HR S  +  +        +LD   GE     ++    S+FT          
Sbjct: 278 RLISFNKLFHRTSPAILVVKDVDTLCPKLDYRKGED--VSNISRISSQFTSLLDCHHGRD 335

Query: 156 ----LIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAAC 209
               +IA ++ +  L   ++   R G  I +        K I++   K TG ++ +    
Sbjct: 336 SGILVIATSSNIESLDAKVRRPGRLGTEIYVRMPSETQRKEIIEAVLKRTGFSLEESDLD 395

Query: 210 EIAMRSRGTPRIAGRLL 226
           EI  RS G       LL
Sbjct: 396 EIIRRSPGYVGADLELL 412


>gi|52549742|gb|AAU83591.1| replication factor C subunit [uncultured archaeon GZfos31B6]
          Length = 416

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 43/244 (17%), Positives = 82/244 (33%), Gaps = 30/244 (12%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           +  + ++       RP T E+  G     +NLK  +E+       L H++  G    GK 
Sbjct: 68  NPQIMEQVIWTEKYRPHTFEDIVGHEHIVANLKHLVES-----NNLPHLVLYGAKNTGKM 122

Query: 69  TLAQVVAR-------ELGVNFRSTSGPVIAKAGDL------AALLTNLEDRDVLFIDEIH 115
           +   V+AR       E  +     S         L      A L+   + + +     I 
Sbjct: 123 SAVFVLARALYGEQWENNLAIFDASNFFDRGKKYLVSDPRFARLIGTDDPKKIQ-KTVIS 181

Query: 116 RLSIIVEEILYPAM--EDFQLDLMVGEGPSARSVKINLSR--------FTLIAATTRVGL 165
               ++ E    A    DF++  +      +   +  L R           I +TT +  
Sbjct: 182 VFKQVINEYAGMAALDSDFRMIFIDSAEALSMDAQHALRRIMEKHSRTCRFILSTTHLPR 241

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           L   L+ R G+ +  +      +   ++  A+     +TD+    I   + G    A  +
Sbjct: 242 LIPALRSR-GLNLFFDRASDATVAAHIRCIAEAERAPITDDGVQAIVYEADGDLAFAIMV 300

Query: 226 LRRV 229
           L+  
Sbjct: 301 LQIA 304


>gi|74192936|dbj|BAE34972.1| unnamed protein product [Mus musculus]
          Length = 949

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 61/326 (18%), Positives = 119/326 (36%), Gaps = 65/326 (19%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI  ++ R      +L F GPPG+GKT++A+ +AR LG  +   S
Sbjct: 478 EDHYGMEDVKKRVLEFIAVSQLRGSTQGKILCFHGPPGVGKTSIARSIARALGREYFRFS 537

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ ++    +        
Sbjct: 538 VGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLVLIDEVDKIGRGYQGDPSSALL 597

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V ++LS+   I     +  +  PL+DR  + I ++ 
Sbjct: 598 ELLDPEQNANFLD-------HYLDVPVDLSKVLFICTANVIDTIPEPLRDRMEM-INVSG 649

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  ++   I +R   L   A T     E   +       A  L   ++ +   +  + + 
Sbjct: 650 YVAQEKLAIAERY--LVPQARTLCGLDESKAQLS-----AAVLTLLIKQYCRESGVRNL- 701

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           ++  +  L + A   +  +   ++      ++F G PV               +E + E 
Sbjct: 702 QKQVEKVLRKAAYKIVSGEAQTVQVTPENLQDFVGKPVF-------------TVERMYE- 747

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLG 328
                     TP G ++M +AW  +G
Sbjct: 748 ---------VTPPG-VVMGLAWTAMG 763


>gi|257126076|ref|YP_003164190.1| ATP-dependent protease La [Leptotrichia buccalis C-1013-b]
 gi|257050015|gb|ACV39199.1| ATP-dependent protease La [Leptotrichia buccalis C-1013-b]
          Length = 798

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 52/246 (21%), Positives = 91/246 (36%), Gaps = 42/246 (17%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEAL--DHVLFVGPPGLGKTTLAQVVARELGVNFRST 85
           E+  G  E    +  F+ A K     L    +  VGPPG+GKT+LA  VAR +   F   
Sbjct: 318 EDHYGLEEVKERILEFL-AIKKLNNTLKGSIICLVGPPGVGKTSLAHSVARSMNRKFTRI 376

Query: 86  SGPVIAKAGDLA------------ALLTNLED----RDVLFIDEIHRL--------SIIV 121
           S   +    ++              ++ +L+       V+  DEI ++        +  +
Sbjct: 377 SLGGVRDEAEIRGHRRTYVGAMPGRIINSLKQVGVNNPVMLFDEIDKMASDFRGDPASAM 436

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
            E+L PA  +   D  +           +LS    I     +G +  PL+DR  I    +
Sbjct: 437 LEVLDPAQNNSFEDHYI-------DHTFDLSNVFFICTANDLGGIPGPLRDRMEIISIES 489

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           + E E L  I +R   L      +    E  +           +++ + ++   A  + +
Sbjct: 490 YTEFEKL-NIAKRY--LIPQTQEENGLKEFKISFSDK-----AIMKIINEYTREAGVRNL 541

Query: 242 TREIAD 247
            REI  
Sbjct: 542 RREIGK 547


>gi|169342349|ref|ZP_02863416.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens C str.
           JGS1495]
 gi|169299574|gb|EDS81637.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens C str.
           JGS1495]
          Length = 713

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 67/262 (25%), Positives = 105/262 (40%), Gaps = 33/262 (12%)

Query: 26  TLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ EA  +L   +       +  +  A+     L VGPPG GKT LA+ VA E 
Sbjct: 164 TFKDVAGQDEAKESLVEIVDFLHDTSKYVEIGAKLPKGALLVGPPGTGKTLLAKAVAGEA 223

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  L    E++   ++FIDEI  +    +  +    E
Sbjct: 224 KVPFFSMSGSDFVEMFVGMGAARVRDLFKQAEEKAPCIVFIDEIDAIGKSRDGAIQGNDE 283

Query: 131 -DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ-----DRFGIPIRLNFYE 184
            +  L+ ++ E     S K       ++AAT R  +L   L      DR  I  R +   
Sbjct: 284 REQTLNQLLTEMDGFDSSKG----VVILAATNRPEVLDKALLRPGRFDRRIIVDRPDLIG 339

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            E++  +  R  KL      D +  EIA   + TP   G  L  + + A +   K   + 
Sbjct: 340 REEILKVHSRDVKL----SDDVSLEEIA---KSTPGAVGADLANIVNEAALRAVKHGRKF 392

Query: 245 IADAALLR-LAIDKMGFDQLDL 265
           +    L   + +   G ++ D 
Sbjct: 393 VIQEDLDEAVEVIIAGQEKRDR 414


>gi|145591415|ref|YP_001153417.1| ATPase [Pyrobaculum arsenaticum DSM 13514]
 gi|145283183|gb|ABP50765.1| ATPase associated with various cellular activities, AAA_3
           [Pyrobaculum arsenaticum DSM 13514]
          Length = 302

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 58/232 (25%), Positives = 92/232 (39%), Gaps = 29/232 (12%)

Query: 37  CSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDL 96
             NLK+ + A  A      HVLF  PPGLGKTTLA+++A+ LG+ F+           D+
Sbjct: 16  VENLKLILAAVVAGG----HVLFNDPPGLGKTTLAKLLAKSLGLVFKRIQFTPDMLPSDV 71

Query: 97  AALL--TNLEDR----------DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSA 144
             +      + R          ++L  DEI+R     +  L  AME+ Q+ +   +G + 
Sbjct: 72  IGVNVWRPNQGRFEFVKGPVFTNILLADEINRAPPKTQAALLEAMEERQVTV---DGVTY 128

Query: 145 RSVKINLSRFTLIAATTR-VGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAV 203
           R  +  +   T      R V  L     DRF I I + +   E+ + I++R         
Sbjct: 129 RLEEPFIVFATQNPVEHRGVYPLPEAQLDRFMIQISMGYPSQEEEEEILRR---RLSWRG 185

Query: 204 TDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255
            D +     + ++        LL  +R   EV     I   I   A    + 
Sbjct: 186 DDPSIYAAPVTTKE------ELLAWMRAAEEVYVDSAIVTFIVKMAQALRSH 231


>gi|319944209|ref|ZP_08018485.1| DNA polymerase III [Lautropia mirabilis ATCC 51599]
 gi|319742504|gb|EFV94915.1| DNA polymerase III [Lautropia mirabilis ATCC 51599]
          Length = 773

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 43/216 (19%), Positives = 68/216 (31%), Gaps = 49/216 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPR  +   GQ      L+  ++      + L H  L  G  G+GKTT+A+++A+ L   
Sbjct: 18  RPRDFDSLVGQDTVVRALRHALD-----NQRLHHAYLLTGTRGVGKTTIARILAKALNCE 72

Query: 82  ------------------------FRSTSGPVIAKAGDLAALLTNL------EDRDVLFI 111
                                   +         K  ++A +L N           V  I
Sbjct: 73  KGVSSHPCGECSACRGVDEGRFPDYLEMDAASNRKVEEMAVVLENAAYLPTVGRYKVFVI 132

Query: 112 DEIHRLSIIVEEILYPAMED--FQLDLMVGEGPSARSVKINLSRFTLIAAT-----TRVG 164
           DE+H LS      +   +E+    +  ++      +     LSR            T  G
Sbjct: 133 DEVHMLSTHAFNAMLKTLEEPPPHVIFVLATTDPQKVPVTVLSRCMQFGLRNVSPATVAG 192

Query: 165 LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
            L N LQ           YE   L+ I +       
Sbjct: 193 HLANVLQAE------DIPYEERSLELIGKAAGGSMR 222


>gi|259909222|ref|YP_002649578.1| DNA polymerase III subunit tau [Erwinia pyrifoliae Ep1/96]
 gi|224964844|emb|CAX56366.1| DNA polymerase III subunit tau [Erwinia pyrifoliae Ep1/96]
 gi|283479272|emb|CAY75188.1| DNA polymerase III, tau and gamma subunits [Erwinia pyrifoliae DSM
           12163]
          Length = 643

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 53/306 (17%), Positives = 100/306 (32%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+   +  GQ    + L        +        LF G  G+GKTT+A+++A+  G+N 
Sbjct: 11  RPQAFTDVVGQQHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTTIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGQCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++        + ATT    L   +  R  +   L   + E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDQEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  +        +     A   +A  + G+ R A  L     D A       +T    + 
Sbjct: 184 RGQLAHVLHAENIGAETRALQLLARAADGSMRDALSL----TDQAIAMGQGQVTAATVND 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L       D+  L  +  +    G   + +   +A      +A+   +   + +  
Sbjct: 240 MLGMLD------DEQPLALIEALVHADGAQVMALLNQAATRGVEWEALLVEMLALLHRVA 293

Query: 309 FIQRTP 314
            IQ  P
Sbjct: 294 MIQLLP 299


>gi|217967257|ref|YP_002352763.1| ATP-dependent metalloprotease FtsH [Dictyoglomus turgidum DSM 6724]
 gi|217336356|gb|ACK42149.1| ATP-dependent metalloprotease FtsH [Dictyoglomus turgidum DSM 6724]
          Length = 607

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 57/253 (22%), Positives = 89/253 (35%), Gaps = 30/253 (11%)

Query: 23  RPR-TLEEFTGQVEACSNLK------VFIEAAKARAEALD-HVLFVGPPGLGKTTLAQVV 74
           RP+ T  +  G  EA   LK       F +  +     +   +L VGPPG GKT LA+ V
Sbjct: 151 RPKVTFADVAGADEAKQELKEVVDFLKFPQKYRQLGARIPRGILLVGPPGTGKTLLARAV 210

Query: 75  ARELGVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           A E  V F S SG            A+  DL      L    ++FIDE+  +       L
Sbjct: 211 AGEANVPFFSISGSEFVEMFVGVGAARVRDLFTQAKKLSP-SIIFIDELDAVGRHRGAGL 269

Query: 126 YPAMEDFQLD----LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIR 179
               ++ +      L+  +G    +  I L      AAT R  +L   L    RF   + 
Sbjct: 270 GGGHDEREQTLNQLLVEMDGFDENTNVIVL------AATNRPDILDPALLRPGRFDRRVI 323

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           ++  + E  K I++   +                           L+      A   + +
Sbjct: 324 VDRPDFEGRKKILEVHLRGKPTGKDVNIDIIAKSTPGFVGADLANLVNEAAILAARKNKR 383

Query: 240 TITREIADAALLR 252
            I  E  + A+ +
Sbjct: 384 EINMEEFEEAIEK 396


>gi|197301564|ref|ZP_03166637.1| hypothetical protein RUMLAC_00290 [Ruminococcus lactaris ATCC
           29176]
 gi|197299294|gb|EDY33821.1| hypothetical protein RUMLAC_00290 [Ruminococcus lactaris ATCC
           29176]
          Length = 1169

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 60/273 (21%), Positives = 95/273 (34%), Gaps = 33/273 (12%)

Query: 16  DADISLL----RPRT-LEEFTGQVEACSNLKVFIEAAKARAEA-------LDHVLFVGPP 63
           D+  +++    RP T   E  G   A + L  F E  K   +           VL  GPP
Sbjct: 718 DSQSAIMKDAQRPTTKFSEVIGAENAKTELAWFTEFLKNPKKYSMEGRRLPKGVLLYGPP 777

Query: 64  GLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DVLFIDEIH 115
           G GKT LA+ +A E  V F  TS        V     ++  L          ++FIDEI 
Sbjct: 778 GTGKTMLARAMAGESDVAFLETSATQFMNSYVGKSEENIRRLFRTARKYAPAIIFIDEID 837

Query: 116 RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATT---------RVGLL 166
            ++            +  L+ ++ E    R          ++AAT          +   +
Sbjct: 838 AIAKERTGDTTSQHTESMLNTLLTEMDGFRENVKE--PVFVLAATNYDLDGSVSGKKRRI 895

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
              L  RF   I ++    E+ K  ++   KL        +   I+  +  T   +  +L
Sbjct: 896 DPALLRRFDNRIYVDLPNEEERKQYLE--LKLNQKGKNKISEDIISNLAARTTGQSIAIL 953

Query: 227 RRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259
           + V + A    AK  T    +  L  L     G
Sbjct: 954 QNVIELAMRNAAKAGTELSGERLLDALEEYNYG 986



 Score = 35.8 bits (81), Expect = 9.8,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 46/134 (34%), Gaps = 25/134 (18%)

Query: 25  RTLEEFTGQVEACSN-------LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           R L+   GQ EA           +VF    + R       LF GPPG+GKT LA+  A  
Sbjct: 223 RLLDTVKGQDEAVMEFVQGCFRGEVF-HILEKRKRPAAVFLFAGPPGVGKTLLAETGAEY 281

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDRD-----------------VLFIDEIHRLSII 120
           LG      +    +    +  L+ + +                    +L  DEI +    
Sbjct: 282 LGKKTIVFNMSEYSNPSSITELMGSSKKFSGAEEGRLVRFVRKNPDGILIFDEIEKADRK 341

Query: 121 VEEILYPAMEDFQL 134
           V  +    ++   L
Sbjct: 342 VIHLFLQILDRGLL 355


>gi|171688524|ref|XP_001909202.1| hypothetical protein [Podospora anserina S mat+]
 gi|170944224|emb|CAP70334.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1117

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 44/192 (22%), Positives = 74/192 (38%), Gaps = 33/192 (17%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI   K R      +L FVGPPG+GKT++ + +AR L   +   S
Sbjct: 573 EDHYGLKDVKDRILEFIAVGKLRGTVEGKILCFVGPPGVGKTSIGKSIARALNRQYYRFS 632

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +A   ++                        +  ++ IDEI ++    +        
Sbjct: 633 VGGLADVAEIKGHRRTYVGALPGRVIQALKKCKTENPLILIDEIDKIGRGYQGDPSSALL 692

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD  +        V ++LSR   +        +  PL DR  + IRL+ 
Sbjct: 693 ELLDPEQNSSFLDHYL-------DVPVDLSRVLFVCTANMTDTIPRPLLDRMEV-IRLSG 744

Query: 183 YEIEDLKTIVQR 194
           Y  ++   I +R
Sbjct: 745 YVSDEKMAIAER 756


>gi|49475044|ref|YP_033085.1| DNA polymerase III subunits gamma and tau [Bartonella henselae str.
           Houston-1]
 gi|49237849|emb|CAF27044.1| DNA polymerase III subunit tau [Bartonella henselae str. Houston-1]
          Length = 646

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 49/254 (19%), Positives = 89/254 (35%), Gaps = 21/254 (8%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+   +  GQ      L    E  +         +  G  G+GKTT A+++AR L
Sbjct: 14  ARKYRPQNFSDLIGQEAMVRTLTNAFETGRIAQAW----MLTGIRGVGKTTTARILARAL 69

Query: 79  GVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
               +    P  V+   G+    +      DV+ +D      I  +  I+E+I Y  +  
Sbjct: 70  NYKTKDIDQPTTVLNTLGEHCTQIIEGRHIDVIEMDAASHTGIDDIREIIEQIRYRPVSA 129

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT +  +   +  R      L  
Sbjct: 130 RYKVYIIDEVHMLSTQAFNGLLKTLEEPPPHVKFIFATTEIRKVPITILSRCQ-RFDLRR 188

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            E   L   +++ A+   + V D+A   IA  + G+ R A  +  +    +    +    
Sbjct: 189 IESAVLSAHLRQIAQHENVEVEDQALSMIARAAEGSARDALSIFDQAIAHSNGKISAVTV 248

Query: 243 REIADAALLRLAID 256
           R +   A     ID
Sbjct: 249 RAMLGLADQARIID 262


>gi|254499263|ref|ZP_05111939.1| cell division control protein 48 ATPase of AAA family CDC48
           subfamily [Legionella drancourtii LLAP12]
 gi|254351507|gb|EET10366.1| cell division control protein 48 ATPase of AAA family CDC48
           subfamily [Legionella drancourtii LLAP12]
          Length = 708

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 80/227 (35%), Gaps = 48/227 (21%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAA-----------KAR 50
           MD + + +   S ED               G       L+   E             +  
Sbjct: 166 MDNDKMQAHTYSYED--------------IG--GLKPQLRRIREMIELPLRYPEVFERLG 209

Query: 51  AEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLE 104
            +A   VL  GPPG GKT +A+ +A E   +F S SGP I          +L  +     
Sbjct: 210 VDAPKGVLLYGPPGSGKTLIAKAIAHETDASFFSISGPEIVHKFYGESEANLRKIFEQAA 269

Query: 105 DR--DVLFIDEIHRLSIIVEEILYPAMEDFQ---LDLMVGEGPSARSVKINLSRFTLIAA 159
            +   ++F+DEI  ++   ++++    +      L LM G     + + I         A
Sbjct: 270 QKAPSIIFLDEIDAIAPKRDQVVGEVEKRIVAQLLALMDGLNTRQKVIVI--------GA 321

Query: 160 TTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVT 204
           T     + + L+   RF   I +   +      I++  ++   LA  
Sbjct: 322 TNLPNSIDSALRRPGRFDREISIAIPDRNGRLEILEIHSRGMPLASD 368



 Score = 42.8 bits (99), Expect = 0.074,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 60/163 (36%), Gaps = 25/163 (15%)

Query: 26  TLEEFTGQVEACSNL-----------KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
              +  G  +  + L           ++F EA          +L VG PG GKT LA+ V
Sbjct: 450 RWSDVGGHKDIKARLSEAVEWPLKYPQLFREAGI---HPPKGILLVGSPGCGKTLLAKAV 506

Query: 75  ARELGVNFRSTSGPVIAKA------GDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILY 126
           A E GVNF S  G  +           +  +          ++F DEI  L    +    
Sbjct: 507 ATESGVNFLSVKGSSLLSKYVGDSEKGVREVFNKARQAAPCIIFFDEIDALVPKRQHE-- 564

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
            + E   ++ ++ +  +       L+   ++ AT R+ +L   
Sbjct: 565 -STETHVMEGVLSQFLAEFDGIEELNNVLVLGATNRIDMLDPA 606


>gi|17541226|ref|NP_501861.1| Mitochondrial Sorting of Proteins (yeast MSP) in Nematode family
           member (mspn-1) [Caenorhabditis elegans]
 gi|14530491|emb|CAC42312.1| C. elegans protein K04D7.2b, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 339

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 48/235 (20%), Positives = 85/235 (36%), Gaps = 23/235 (9%)

Query: 28  EEFTGQVEACSNLK-----VFIEAAKARAEALD---HVLFVGPPGLGKTTLAQVVARELG 79
           +E  G  E  + LK         A+++ +  L     +L  GPPG GKT LA+ VAR  G
Sbjct: 80  DEIGGCEELVAELKDRIILPLRFASQSGSHLLSPPRGILLYGPPGCGKTLLAKAVARAAG 139

Query: 80  VNFRSTSGPVI-----AKAGDLAALLTNLEDR---DVLFIDEIHRLSIIVEEILYPAMED 131
             F +     +      ++  LAA + ++  +    ++FIDEI       +   + +   
Sbjct: 140 CRFINLQVSNLTDKWYGESQKLAAAVFSVAQKFQPTIIFIDEIDSFLRDRQSHDHESTAM 199

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
            +   M      + S      +  ++ AT R   +   +  R     ++     +    I
Sbjct: 200 MKAQFMTLWDGFSSSGD----QIIVMGATNRPRDVDAAILRRMTARFQVPVPNAKQRSQI 255

Query: 192 VQ---RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           +    R  K+       E A      S    +   RL    R  A VA   ++ +
Sbjct: 256 LNVILRNEKINNTVNLGEIAQAAEGLSGSDLKEVCRLALLARAKATVASGGSVNQ 310


>gi|82596542|ref|XP_726304.1| cell division cycle ATPase [Plasmodium yoelii yoelii str. 17XNL]
 gi|23481659|gb|EAA17869.1| putative cell division cycle ATPase [Plasmodium yoelii yoelii]
          Length = 1078

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 66/186 (35%), Gaps = 29/186 (15%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARELG 79
           ++  G  +  + ++  IE      E        A   VL  G PG GKT++A+ +A E  
Sbjct: 435 DDLGGMKKQLNKIRELIELPLKYPEIFVSIGISAPKGVLMHGIPGTGKTSIAKAIANESN 494

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIH---RLSIIVEEILYPA 128
                 +GP I           L  +     ++   ++FIDEI             L   
Sbjct: 495 AYCYIINGPEIMSKHIGESEQKLRKIFKKASEKTPCIIFIDEIDSIANKRNKSSNELEKR 554

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           +    L LM G   +   +        ++AAT R   L   L+   RF   I +   + +
Sbjct: 555 VVSQLLTLMDGLKKNNNVL--------VLAATNRPNSLDPALRRFGRFDREIEIPVPDEQ 606

Query: 187 DLKTIV 192
               I+
Sbjct: 607 GRYEIL 612



 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 46/197 (23%), Positives = 73/197 (37%), Gaps = 22/197 (11%)

Query: 26  TLEEFTGQVEACSNLK--VFIEA------AKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           T ++  G       LK  +           K  +     +L  GPPG GKT LA+ +A E
Sbjct: 780 TWDDIGGMQYVKEQLKETILYPLEYKHLYNKFNSNYNKGILLYGPPGCGKTLLAKAIANE 839

Query: 78  LGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAM 129
              NF S  GP +     G+  A + +L D+       ++F DEI  L+           
Sbjct: 840 CNANFISVKGPELLTMWFGESEANVRDLFDKARAASPCIIFFDEIDSLAKERNSNNNNDA 899

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            D  ++ ++ E               +IAAT R  +L   L    R    I ++  + + 
Sbjct: 900 SDRVINQILTEI----DGINEKKTIFIIAATNRPDILDKALTRPGRLDKLIYISLPDFKS 955

Query: 188 LKTIVQRGAKLTGLAVT 204
             +I +   K T L   
Sbjct: 956 RCSIFKAILKNTPLNKD 972


>gi|328949928|ref|YP_004367263.1| ATP-dependent metalloprotease FtsH [Marinithermus hydrothermalis
           DSM 14884]
 gi|328450252|gb|AEB11153.1| ATP-dependent metalloprotease FtsH [Marinithermus hydrothermalis
           DSM 14884]
          Length = 621

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 57/263 (21%), Positives = 95/263 (36%), Gaps = 26/263 (9%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAR 76
           P T  +  G  E    L   ++  K         AE    VL VGPPG GKT LA+ VA 
Sbjct: 161 PTTFRDVAGHEEVKRELMEVVDFLKNPQKYIAIGAEIPKGVLLVGPPGTGKTLLARAVAG 220

Query: 77  ELGVNFRSTSGPVIA------KAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPA 128
           E GV F S S            A  +  L          ++FIDE+  +       +   
Sbjct: 221 EAGVPFFSVSASEFMEMFVGVGASRVRTLFDEARKNAPAIIFIDELDSIGRKRGAGIGGG 280

Query: 129 MEDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
            ++ +  L  ++ E               ++AAT R  +L   L    RF   + +    
Sbjct: 281 HDEREQTLNQILSEMDGFEKDTS----VIVMAATNRPDILDPALLRPGRFDRQVVVGLPS 336

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            E+ + I++   +   +    +      M S  +      L+      A   +A+ I R+
Sbjct: 337 QEERREILKVHMRNKPIENDVDVEELAHMTSGFSGADLKNLVNEAALQAARENAQKIRRD 396

Query: 245 IADAALLRLAIDKMGFDQLDLRY 267
               AL ++    +G ++  L+ 
Sbjct: 397 HFLTALDKI---VLGLERGTLKL 416


>gi|322372274|ref|ZP_08046815.1| cell division control protein 48 [Haladaptatus paucihalophilus
           DX253]
 gi|320548283|gb|EFW89956.1| cell division control protein 48 [Haladaptatus paucihalophilus
           DX253]
          Length = 740

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 62/295 (21%), Positives = 114/295 (38%), Gaps = 36/295 (12%)

Query: 15  EDADISLLR------PR-TLEEFTGQVEACSNLKVFIE--------AAKARAEALDHVLF 59
            + + S +R      P+ + ++  G  +A S +K  +E          +   E    VL 
Sbjct: 442 NEVEPSAMREVLVELPKVSWDDVGGLEDAKSQVKESVEWPLSSPEKFERMGIEPPSGVLL 501

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDR------DVLFI 111
            GPPG GKT +A+ VA E   NF S  GP  +    G+    +     +       V+F 
Sbjct: 502 YGPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFRKARQVSPTVIFF 561

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+  L+    + +   + +  ++ ++ E         +     +I AT R  ++   L 
Sbjct: 562 DELDSLAPGRGQEVGSNVSERVVNQLLTELDGLE----DKGDVMVIGATNRPDMIDPALI 617

Query: 172 D--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR- 228
              RF   + +   + E  + I++   + + LA  D +  E+A  + G        + R 
Sbjct: 618 RSGRFDRLVMIGQPDEEGREQILKIHTEDSPLA-PDVSLRELAEMTDGYVGSDLESIARE 676

Query: 229 --VRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVG 281
             +    E   A+ +      AA+  +    +  D LD  Y   + + F GG  G
Sbjct: 677 AAIEALREDDDAEEVEMRHFRAAMESVRA-TVTEDLLD--YYADMEQEFKGGSSG 728



 Score = 52.4 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 52/200 (26%), Positives = 77/200 (38%), Gaps = 25/200 (12%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLT 101
           K   E    VL  GPPG GKT LA+ VA E   +F S +GP I           L  +  
Sbjct: 217 KLGIEPPQGVLLHGPPGTGKTLLAKAVANETSASFFSIAGPEIISKYYGESEQQLREIFE 276

Query: 102 NLEDR--DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV-GEGPSARSVKINLSRFTLIA 158
           +  +    ++FIDE+  ++   E++           L+   +G  AR       +  +IA
Sbjct: 277 DAAEESPSIIFIDELDSIAPKREDVTGEVERRVVAQLLTMMDGLEAR------GQVIVIA 330

Query: 159 ATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVT--------DEAA 208
           AT RV  +   L+   RF   I +   + E    I+Q   +   L+          D   
Sbjct: 331 ATNRVDSVDPALRRPGRFDREIEIGVPDEEGRTEILQIHTRGMPLSDDVNLPGLSNDTHG 390

Query: 209 CEIAMRSRGTPRIAGRLLRR 228
              A     T   A + LRR
Sbjct: 391 FVGADIESLTKEAAMKALRR 410


>gi|241557953|ref|XP_002400359.1| ATPase, putative [Ixodes scapularis]
 gi|229559934|sp|B7PXE3|SPAST_IXOSC RecName: Full=Spastin
 gi|215501771|gb|EEC11265.1| ATPase, putative [Ixodes scapularis]
          Length = 648

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 47/239 (19%), Positives = 83/239 (34%), Gaps = 21/239 (8%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAKARAE-------ALDHVLFVGPPGLGKTTLAQVVAR 76
           P    +  GQ  A   L   +     R E           +L  GPPG GKT LA+ VA 
Sbjct: 370 PVLFSDIAGQEVAKQALSEMVILPTDRPELFTGLRAPPKGLLLFGPPGNGKTMLAKAVAH 429

Query: 77  ELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPA 128
           E    F + S   +           + AL     +    ++FIDE+  L    ++  + A
Sbjct: 430 ESNSTFLNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLSERKDNEHEA 489

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
               + + +V           +  R  ++ AT R   L +    RF   + +   +    
Sbjct: 490 TRRLKTEFLVEFDG---LHTGSEERVLVMGATNRPQELDDAALRRFTKRVYVTLPDHNTR 546

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
             +++   KL        +A ++   +R T   +G  L  +   A +   + +  E   
Sbjct: 547 VILLE---KLLKKHNNPLSADKLKYLARLTEGYSGSDLTALAKDAALGPIRELNPEQVR 602


>gi|88856402|ref|ZP_01131060.1| DNA polymerase III subunits gamma and tau [marine actinobacterium
           PHSC20C1]
 gi|88814269|gb|EAR24133.1| DNA polymerase III subunits gamma and tau [marine actinobacterium
           PHSC20C1]
          Length = 713

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 79/245 (32%), Gaps = 27/245 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T  E  GQ +    L+  +   +         LF GP G GKTT A+++AR
Sbjct: 4   ALYRRYRPETFAELIGQSQVTDPLRTALRTDRVNHAY----LFSGPRGCGKTTSARILAR 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR----DVLFIDEIHRLSIIVEEILY------ 126
            L        GP     G  A+ +    D     DV+ ID      +     L       
Sbjct: 60  CLNC----AEGPTDTPCGVCASCVELSRDGGGSLDVVEIDAASHNGVDDARDLRERAVFA 115

Query: 127 PAMEDFQLDLMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
           PA + F++ ++         G     + V+        I ATT    +   ++ R     
Sbjct: 116 PARDRFKIFILDEAHMVTPQGFNAMLKIVEEPPEHVKFIFATTEPDKVIGTIRSR-THHY 174

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
                    +   VQ+  +   + V       +     G+ R    LL ++   ++    
Sbjct: 175 PFRLVPPAQMLDYVQQLCESEKVEVEPGVLPLVVRAGGGSVRDTLSLLDQLIAGSDTQKV 234

Query: 239 KTITR 243
                
Sbjct: 235 GYERA 239


>gi|242047018|ref|XP_002461255.1| hypothetical protein SORBIDRAFT_02g043690 [Sorghum bicolor]
 gi|241924632|gb|EER97776.1| hypothetical protein SORBIDRAFT_02g043690 [Sorghum bicolor]
          Length = 990

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 51/254 (20%), Positives = 85/254 (33%), Gaps = 38/254 (14%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI   K R  +   ++   GPPG+GKT++ + +AR L   F   S
Sbjct: 435 EDHYGLNDVKERILEFIAVGKLRGTSQGKIICLSGPPGVGKTSIGRSIARALNRQFYRFS 494

Query: 87  GPVIAKAGDLAALLTNLED----------------RDVLFIDEIHRLSI--------IVE 122
              +A   ++                           ++ IDEI +L           + 
Sbjct: 495 VGGLADVAEIKGHRRTYVGAMPGKMVQCLKSVGTANPLVLIDEIDKLGKGHSGDPASALL 554

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V I+LS+   +     + ++ NPL DR  I     +
Sbjct: 555 ELLDPEQNVNFLD-------HYLDVPIDLSKVLFVCTANVIEMIPNPLLDRMEIIAIAGY 607

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH-AKTI 241
              E +       A+      T +A      +   T      L+      A V +  K I
Sbjct: 608 ITDEKVH-----IARDYLEKNTRQACGIKPQQVEVTDAALLALIENYCREAGVRNLQKQI 662

Query: 242 TREIADAALLRLAI 255
            +     AL  +  
Sbjct: 663 EKIYRKIALQLVRQ 676


>gi|218133177|ref|ZP_03461981.1| hypothetical protein BACPEC_01039 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992050|gb|EEC58054.1| hypothetical protein BACPEC_01039 [Bacteroides pectinophilus ATCC
           43243]
          Length = 616

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 56/230 (24%), Positives = 86/230 (37%), Gaps = 29/230 (12%)

Query: 26  TLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ EA   L   +       + A+  A+     L VGPPG GKT LA+ VA E 
Sbjct: 164 TFKDVAGQEEAKEALTEIVDFLHNPDKYAEIGAKLPKGALLVGPPGTGKTLLAKAVAGEA 223

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S +G           A  +  L     ++   ++FIDEI  +    +   Y    
Sbjct: 224 DVPFFSIAGSEFVEMFVGMGASKVRDLFKQANEKAPCIVFIDEIDTIGKKRDGGSYGGGN 283

Query: 131 D---FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           D     L+ ++ E               ++AAT R   L   L    RF   I +   ++
Sbjct: 284 DEREQTLNQLLTEMDGFD----GKKGVVILAATNRPESLDKALLRPGRFDRRIPVELPDL 339

Query: 186 EDLKTIVQRGAKLTGL-AVTDEAACEIAMRSRGTPRIAG----RLLRRVR 230
           +  + I++  A    +    D +A   A        +A       LR VR
Sbjct: 340 KGREAILRVHADKVRVNESVDYSAIARATAGASGAELANIVNEAALRAVR 389


>gi|145496459|ref|XP_001434220.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124401344|emb|CAK66823.1| unnamed protein product [Paramecium tetraurelia]
          Length = 445

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 85/230 (36%), Gaps = 22/230 (9%)

Query: 43  FIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTS---------GPVIAKA 93
            +   K        +LF GPPG GKTT A+++A+++ +               G    + 
Sbjct: 224 ALTRVKNEPNRPKAILFEGPPGTGKTTTARIIAQQVQIPLVYLPIESFMSKWYGESERQF 283

Query: 94  GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSR 153
            D+      L  R ++FIDEI  ++      ++         L+        +  + L  
Sbjct: 284 ADIWKGCQQLG-RAIIFIDEIDAIAQQRGGEMHEVSRRILSTLLRKIDSFESNTNVLL-- 340

Query: 154 FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAM 213
              I AT R   L   +  R  + ++ +  + +  + I QR AK            E  +
Sbjct: 341 ---ICATNRKQDLDAAMLSRIDLSVKFDLPDNQARQEIFQRYAKHLTDK-------ERDI 390

Query: 214 RSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQL 263
            S+ +  ++GR +  +   AE   A  + R+     L  LA  K    Q 
Sbjct: 391 LSQLSNGMSGRNISDICKDAERRWAAKLIRKEVTEQLPSLAQYKETLTQR 440


>gi|72389534|ref|XP_845062.1| peroxisome assembly protein [Trypanosoma brucei TREU927]
 gi|62176745|gb|AAX70845.1| peroxisome assembly protein, putative [Trypanosoma brucei]
 gi|70801596|gb|AAZ11503.1| peroxisome assembly protein, putative [Trypanosoma brucei brucei
           strain 927/4 GUTat10.1]
          Length = 982

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 58/239 (24%), Positives = 85/239 (35%), Gaps = 25/239 (10%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH---------VLFVGPPGLGKTTL 70
           + L+P    +  G  +A   L+  I+      E L +         +LF GPPG GKT L
Sbjct: 675 TKLQPVRWSDVGGLEDAKRELREMIQLPLLYPELLGNGGNAKHGAGILFYGPPGCGKTLL 734

Query: 71  AQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIV- 121
           A+ VA E+ +NF +  GP +          ++  L     D    ++F DE+  L+    
Sbjct: 735 AKAVATEMNMNFMAVKGPELINQYVGESEKNIRLLFQRARDNSPCIIFFDELDALAPARG 794

Query: 122 -EEILYPAMEDFQLDLMVGEG--PSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGI 176
            +     AM+     L+V       +RS      +  +IAAT R  LL   L    RF  
Sbjct: 795 AKGDAGGAMDRVVAQLLVEVDGVGHSRSDGTAAGKVFIIAATNRPDLLDPALLRPGRFDK 854

Query: 177 PIRLNFYEIEDLKTIVQRGA--KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
              L        + +  R    K       D  A    M    T      L      FA
Sbjct: 855 LCYLGIPSTRSEQLVALRALTRKFHLAEDVDLEALLQPMTLDYTGADLFALCSDAMMFA 913


>gi|74203414|dbj|BAE20868.1| unnamed protein product [Mus musculus]
          Length = 953

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 61/326 (18%), Positives = 119/326 (36%), Gaps = 65/326 (19%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI  ++ R      +L F GPPG+GKT++A+ +AR LG  +   S
Sbjct: 482 EDHYGMEDVKKRVLEFIAVSQLRGSTQGKILCFHGPPGVGKTSIARSIARALGREYFRFS 541

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ ++    +        
Sbjct: 542 VGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLVLIDEVDKIGRGYQGDPSSALL 601

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V ++LS+   I     +  +  PL+DR  + I ++ 
Sbjct: 602 ELLDPEQNANFLD-------HYLDVPVDLSKVLFICTANVIDTIPEPLRDRMEM-INVSG 653

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  ++   I +R   L   A T     E   +       A  L   ++ +   +  + + 
Sbjct: 654 YVAQEKLAIAERY--LVPQARTLCGLDESKAQLS-----AAVLTLLIKQYCRESGVRNL- 705

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           ++  +  L + A   +  +   ++      ++F G PV               +E + E 
Sbjct: 706 QKQVEKVLRKAAYKIVSGEAQTVQVTPENLQDFVGKPVF-------------TVERMYE- 751

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLG 328
                     TP G ++M +AW  +G
Sbjct: 752 ---------VTPPG-VVMGLAWTAMG 767


>gi|149194845|ref|ZP_01871939.1| DNA polymerase III subunits gamma and tau [Caminibacter
           mediatlanticus TB-2]
 gi|149135004|gb|EDM23486.1| DNA polymerase III subunits gamma and tau [Caminibacter
           mediatlanticus TB-2]
          Length = 487

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 66/203 (32%), Gaps = 37/203 (18%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  EE  GQ      L   + + +         LF G  G GKTT A++ ++ L    
Sbjct: 8   RPKKFEEIIGQDAIIQTLINSLNSNRIANAY----LFSGLRGSGKTTTARIFSKALQCEK 63

Query: 83  RSTSGP------------------------VIAKAGDLAALLTNLEDRD------VLFID 112
             +S P                           K  D+  L+ + + +       +  ID
Sbjct: 64  GISSSPCEECESCKLANENRHIDIIEMDAASNRKIEDIRELIEHTKYKPSISRFKIFIID 123

Query: 113 EIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           E+H L+      L   +E+    +  ++      +     LSR                 
Sbjct: 124 EVHMLTNEAFNALLKTLEEPPEYVKFIMATTDPLKLPATILSRVQHFRFNKIPEKEIESF 183

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQ 193
             +  I   + F E E L+ IV+
Sbjct: 184 LQKVLIKENVKF-EDEALRLIVK 205


>gi|119493933|ref|ZP_01624495.1| cell division protein [Lyngbya sp. PCC 8106]
 gi|119452331|gb|EAW33525.1| cell division protein [Lyngbya sp. PCC 8106]
          Length = 628

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 61/273 (22%), Positives = 98/273 (35%), Gaps = 23/273 (8%)

Query: 27  LEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVARELG 79
            ++  G  EA   L+  +   K         A     VL VGPPG GKT LA+ +A E G
Sbjct: 172 FDDVAGVEEAKEELQEVVTFLKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAG 231

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMED 131
           V F S SG           A  +  L    ++    ++FIDEI  +       +    ++
Sbjct: 232 VPFFSISGSEFVEMFVGVGASRVRDLFKKAKETAPCIIFIDEIDAVGRQRGAGIGGGNDE 291

Query: 132 FQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            +  L  ++ E               +IAAT R  +L + L    RF   + ++  +++ 
Sbjct: 292 REQTLNQLLTEMDGFEGNTG----IIIIAATNRPDVLDSALLRPGRFDRQVSVDAPDVKG 347

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
              I+   A+   LA               T      LL            + IT    D
Sbjct: 348 RLEILDVHARNKKLAEDISLETIARRTPGFTGADLANLLNEAAILTARRRKEAITMSEID 407

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV 280
            A+ R+     G   +D +   +IA +  G  +
Sbjct: 408 DAVDRVVAGMEGTPLIDGKSKRLIAYHEVGHAI 440


>gi|113477982|ref|YP_724043.1| FtsH peptidase [Trichodesmium erythraeum IMS101]
 gi|110169030|gb|ABG53570.1| FtsH peptidase homologue, chloroplast. Metallo peptidase. MEROPS
           family M41 [Trichodesmium erythraeum IMS101]
          Length = 628

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 61/273 (22%), Positives = 100/273 (36%), Gaps = 23/273 (8%)

Query: 27  LEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVARELG 79
            ++  G  EA   L+  +   K         A     VL VGPPG GKT LA+ +A E G
Sbjct: 172 FDDVAGVDEAKEELQEVVTFLKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAG 231

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMED 131
           V F S SG           A  +  L    ++    ++FIDEI  +       +    ++
Sbjct: 232 VPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIIFIDEIDAVGRQRGAGIGGGNDE 291

Query: 132 FQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            +  L  ++ E           S   +IAAT R  +L + L    RF   + ++  +I+ 
Sbjct: 292 REQTLNQLLTEMDGFEGN----SGIIIIAATNRPDVLDSALLRPGRFDRQVTVDAPDIKG 347

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
             +I+   A+   L+               T      LL            + IT    +
Sbjct: 348 RLSILDVHARDKKLSSEISLEAIARRTPGFTGADLANLLNEAAILTARRRKEAITMLEIN 407

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV 280
            A+ R+     G   +D +   +IA +  G  +
Sbjct: 408 DAVDRVVAGMEGTPLMDGKSKRLIAYHEVGHAI 440


>gi|237831685|ref|XP_002365140.1| cell division protein, putative [Toxoplasma gondii ME49]
 gi|211962804|gb|EEA97999.1| cell division protein, putative [Toxoplasma gondii ME49]
 gi|221506694|gb|EEE32311.1| cell division protein, putative [Toxoplasma gondii VEG]
          Length = 978

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 45/196 (22%), Positives = 80/196 (40%), Gaps = 17/196 (8%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAKARAE-------ALDHVLFVGPPGLGKTTLAQVVAR 76
           P T  +  G  EA + L+  ++  +  ++           VL VGPPG GKT LA+ VA 
Sbjct: 75  PLTFNDLAGLTEAKTELQEVVQFLRDPSKFERLGARLPKGVLLVGPPGTGKTALARAVAT 134

Query: 77  ELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPA 128
           E GV +   SG           A  +  L +   +    ++F+DE+  +    +    P 
Sbjct: 135 EAGVPYFYASGSEFVEIYVGQGARRVRGLFSYARNHSPCIIFLDELDAVGGRRQASAGPG 194

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
             + + D  + +           SR  ++AAT RV  L   L    RF   + ++  ++ 
Sbjct: 195 AGNREHDQTLNQLLVEMDGFNQASRIVVLAATNRVDTLDPALLRPGRFDRIVHVSLPDVA 254

Query: 187 DLKTIVQRGAKLTGLA 202
             + I+Q+  +   + 
Sbjct: 255 ARELILQKYLQRVPVE 270


>gi|26984237|gb|AAN85210.1| mitochondrial ATP-dependent protease Lon [Mus musculus]
          Length = 949

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 61/326 (18%), Positives = 119/326 (36%), Gaps = 65/326 (19%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI  ++ R      +L F GPPG+GKT++A+ +AR LG  +   S
Sbjct: 478 EDHYGMEDVKKRVLEFIAVSQLRGSTQGKILCFHGPPGVGKTSIARSIARALGREYFRFS 537

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ ++    +        
Sbjct: 538 VGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLVLIDEVDKIGRGYQGDPSSALL 597

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V ++LS+   I     +  +  PL+DR  + I ++ 
Sbjct: 598 ELLDPEQNANFLD-------HYLDVPVDLSKVLFICTANVIDTIPEPLRDRMEM-INVSG 649

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  ++   I +R   L   A T     E   +       A  L   ++ +   +  + + 
Sbjct: 650 YVAQEKLAIAERY--LVPQARTLCGLDESKAQLS-----AAVLTLLIKQYCRESGVRNL- 701

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           ++  +  L + A   +  +   ++      ++F G PV               +E + E 
Sbjct: 702 QKQVEKVLRKAAYKIVSGEAQTVQVTPENLQDFVGKPVF-------------TVERMYE- 747

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLG 328
                     TP G ++M +AW  +G
Sbjct: 748 ---------VTPPG-VVMGLAWTAMG 763


>gi|440874|gb|AAA61616.1| hLON ATP-dependent protease [Homo sapiens]
          Length = 962

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 73/192 (38%), Gaps = 33/192 (17%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI  ++ R      +L F GPPG+GKT++A+ +AR L   +   S
Sbjct: 492 EDHYGMEDVKKRILEFIAVSQLRGSTQGKILCFYGPPGVGKTSIARSIARALNREYFRFS 551

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ ++    +        
Sbjct: 552 VGGMTDVTEIKGHRRTYVGAMPGKIIQCLKKTKTENPLILIDEVDKIGRGYQGDPSSALL 611

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V ++LS+   I        +  PL+DR  + I ++ 
Sbjct: 612 ELLDPEQNANFLD-------HYLDVPVDLSKVLFICTANVTDTIPEPLRDRMEM-INVSG 663

Query: 183 YEIEDLKTIVQR 194
           Y  ++   I +R
Sbjct: 664 YVAQEKLAIAER 675


>gi|194858161|ref|XP_001969115.1| TER94 [Drosophila erecta]
 gi|27374245|gb|AAO01004.1| CG2331-PA [Drosophila erecta]
 gi|190660982|gb|EDV58174.1| TER94 [Drosophila erecta]
          Length = 801

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 85/257 (33%), Gaps = 28/257 (10%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVAR 76
            T  +  G       L+  ++      +            VLF GPPG GKT LA+ +A 
Sbjct: 471 TTWTDIGGLESVKKELQELVQYPVEHPDKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIAN 530

Query: 77  ELGVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127
           E   NF S  GP +         A   D+     +     VLF DE+  ++      +  
Sbjct: 531 ECQANFISVKGPELLTMWFGESEANVRDIFDKARSAAP-CVLFFDELDSIAKARGGNVGD 589

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           A      D ++ +  +            +I AT R  ++   +    R    I +   + 
Sbjct: 590 A--GGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDD 647

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA------EVAHAK 239
           +  + I++   + + LA   + +    +    +      + +R    A           +
Sbjct: 648 KSREAILKANLRKSPLAKEVDLSYIAKVTQGFSGADLTEICQRACKLAIRQAIEAEIRRE 707

Query: 240 TITREIADAALLRLAID 256
               E  ++A+     D
Sbjct: 708 KERAENQNSAMDMDEDD 724



 Score = 52.0 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/164 (23%), Positives = 62/164 (37%), Gaps = 22/164 (13%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARA--------EALDHVLFVGPPGLGKTTLAQVVARELG 79
           ++  G  +  + +K  +E              +    +L  GPPG GKT +A+ VA E G
Sbjct: 201 DDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVANETG 260

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMED 131
             F   +GP I          +L       E     ++FIDEI  ++   ++        
Sbjct: 261 AFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAIIFIDEIDAIAPKRDKTHGEVERR 320

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
               L+       +S     S   ++AAT R   +   L+ RFG
Sbjct: 321 IVSQLLTLMDGMKKS-----SHLIVMAATNRPNSIDPALR-RFG 358


>gi|18977335|ref|NP_578692.1| cell division protein CDC48 [Pyrococcus furiosus DSM 3638]
 gi|18893012|gb|AAL81087.1| cell division control protein 48, aaa family [Pyrococcus furiosus
           DSM 3638]
          Length = 837

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 47/186 (25%), Positives = 73/186 (39%), Gaps = 23/186 (12%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
           T E+  G  EA   ++  +E      E            VL  GPPG GKT LA+ VA E
Sbjct: 207 TYEDIGGLKEAIEKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANE 266

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM 129
               F + +GP I           L  +    E+    ++FIDEI  ++   EE++    
Sbjct: 267 ANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKREEVVGEVE 326

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
           +     L+            +  +  +IAAT R   +   L+   RF   I +   + + 
Sbjct: 327 KRVVSQLLT-----LMDGLKSRGKVIVIAATNRPDAIDPALRRPGRFDREIEVGVPDKQG 381

Query: 188 LKTIVQ 193
            K I+Q
Sbjct: 382 RKEILQ 387



 Score = 52.4 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 45/207 (21%), Positives = 75/207 (36%), Gaps = 23/207 (11%)

Query: 28  EEFTGQVEACSNLKVFIE-------AAKARAEALD-HVLFVGPPGLGKTTLAQVVARELG 79
           ++  G  E    L+  +E       A K    +    +L  GPPG GKT LA+ VA E  
Sbjct: 544 DDIGGLEEVKQQLREAVEWPLKYPKAFKRLGISPPKGILLYGPPGTGKTLLAKAVATESQ 603

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAMED 131
            NF +  GP +           +  +          ++FIDEI  ++            +
Sbjct: 604 ANFIAIRGPEVLSKWVGESEKRIREIFRKARQAAPAIIFIDEIDAIAPAR----GGYEGE 659

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
              D ++ +  +        S   +I AT R  ++   L    RF   I +   + +   
Sbjct: 660 RVTDRLINQLLTEMDGIQENSGVVVIGATNRPDIIDPALLRPGRFDRLILVPAPDEKARL 719

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSR 216
            I +   +   LA  D    E+A R+ 
Sbjct: 720 EIFKVHTRGMPLA-DDVDLKELARRTE 745


>gi|15669345|ref|NP_248150.1| cell division protein CDC48 [Methanocaldococcus jannaschii DSM
           2661]
 gi|2492505|sp|Q58556|Y1156_METJA RecName: Full=Cell division cycle protein 48 homolog MJ1156
 gi|1591785|gb|AAB99153.1| cell division control protein 48 (cdc48), AAA family
           [Methanocaldococcus jannaschii DSM 2661]
          Length = 903

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 68/307 (22%), Positives = 102/307 (33%), Gaps = 52/307 (16%)

Query: 15  EDADISLLR------PR-TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLF 59
           +D + S +R      P    E+  G  E    L+  +E      E            VL 
Sbjct: 432 KDVEPSAMREVLVEVPNVKWEDIGGLEEVKQELREAVEWPLKAKEVFEKIGVRPPKGVLL 491

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFI 111
            GPPG GKT LA+ VA E G NF S  GP I           +  +          ++F 
Sbjct: 492 FGPPGTGKTLLAKAVANESGANFISVKGPEIFSKWVGESEKAIREIFRKARQSAPCIIFF 551

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPL- 170
           DEI  ++      L  A+ D  ++ ++ E       K       +IAAT R  ++   L 
Sbjct: 552 DEIDAIAPKRGRDLSSAVTDKVVNQLLTELDGMEEPK----DVVVIAATNRPDIIDPALL 607

Query: 171 ----QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
                DR  +    +     D+  I  R   L      D    E+A ++ G        L
Sbjct: 608 RPGRLDRVILVPVPDEKARLDIFKIHTRSMNL----AEDVNLEELAKKTEGYTGADIEAL 663

Query: 227 RRVRDFAEVAHA--KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIET 284
            R      V  +  K    E+    L              + YL  I+  F    V + +
Sbjct: 664 CREAAMLAVRESIGKPWDIEVKLREL--------------INYLQSISGTFRAAAVELNS 709

Query: 285 ISAGLSE 291
           +     E
Sbjct: 710 VIKATKE 716



 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 53/197 (26%), Positives = 74/197 (37%), Gaps = 23/197 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAA--------KARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           T E+  G  E    ++  IE          K   E    VL VGPPG GKT LA+ VA E
Sbjct: 177 TYEDIGGLKEEVKKVREMIELPMRHPELFEKLGIEPPKGVLLVGPPGTGKTLLAKAVANE 236

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM 129
            G NF   +GP I          +L  +    E+    ++FIDEI  ++   +E      
Sbjct: 237 AGANFYVINGPEIMSKYVGETEENLRKIFEEAEENAPSIIFIDEIDAIAPKRDEATGEVE 296

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                 L+               +  +I AT R   L   L+   RF   I +   + E 
Sbjct: 297 RRLVAQLLT-----LMDGLKGRGQVVVIGATNRPNALDPALRRPGRFDREIVIGVPDREG 351

Query: 188 LKTIVQRGAKLTGLAVT 204
            K I+Q   +   LA  
Sbjct: 352 RKEILQIHTRNMPLAED 368


>gi|325279234|ref|YP_004251776.1| ATP-dependent metalloprotease FtsH [Odoribacter splanchnicus DSM
           20712]
 gi|324311043|gb|ADY31596.1| ATP-dependent metalloprotease FtsH [Odoribacter splanchnicus DSM
           20712]
          Length = 668

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 62/263 (23%), Positives = 103/263 (39%), Gaps = 29/263 (11%)

Query: 26  TLEEFTG-----QV--EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G     Q   E  S LK   +  K   +     L VGPPG GKT +A+ +A E 
Sbjct: 205 TFKDVAGLAEAKQEVEEIVSFLKSPDKYTKLGGKIPKGALLVGPPGTGKTLMAKAMAGEA 264

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIV--EEILYPA 128
            V F S SG       V   A  +  L    +++   ++FIDEI  +         +   
Sbjct: 265 NVPFFSMSGSDFVEMFVGVGASRVRDLFKQAKEKAPCIIFIDEIDAIGRARGKNPNMGSN 324

Query: 129 ME-DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
            E +  L+ ++ E     +     S   ++AAT R  +L + L    RF   I ++  E+
Sbjct: 325 DERENTLNQLLTEMDGFETN----SGVIILAATNRADILDSALLRAGRFDRQIYVDLPEL 380

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           +D + I +   K   LA       +I   ++ TP  +G  +  V + A +  A+    E+
Sbjct: 381 KDREEIFKVHLKPLKLAGD----VDIPFLAKQTPGFSGADIANVANEAALIAARKDKNEV 436

Query: 246 ADAA-LLRLAIDKMGFDQLDLRY 267
                L  +     G +      
Sbjct: 437 EKQDFLDAIDRIVGGLENRSKVI 459


>gi|297814494|ref|XP_002875130.1| hypothetical protein ARALYDRAFT_484163 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297320968|gb|EFH51389.1| hypothetical protein ARALYDRAFT_484163 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1222

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 77/223 (34%), Gaps = 23/223 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP   EE  GQ     +L      A  R+      LF GP G GKT+ A++ +  L    
Sbjct: 460 RPMFFEELIGQSIVVQSL----MNAVKRSRIAPVYLFQGPRGTGKTSTARIFSAALNCVA 515

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL-------YPAMEDFQLD 135
                P      +    ++  + +D   +D  ++        L        P        
Sbjct: 516 TEEMKP-CGYCKECNEFMSG-KSKDFWELDGANKKGADKVRYLLKNLPTILPRNSSMYKV 573

Query: 136 LMVGEGP---------SARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             + ++  L +   I  TT +  +   +Q R    +     + +
Sbjct: 574 FVIDECHLLPLKTWLSFLKFLENPLQKVVFIFITTDLENVPRTIQSRCQKFLFDKLKDSD 633

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
            +   +++ A    L V   A   IAM + G+ R A  +L ++
Sbjct: 634 IVVR-LKKIASDENLDVDLHALDLIAMNADGSLRDAETMLEQL 675


>gi|14601331|ref|NP_147866.1| hypothetical protein APE_1317 [Aeropyrum pernix K1]
 gi|5104994|dbj|BAA80308.1| conserved hypothetical protein MoxR [Aeropyrum pernix K1]
          Length = 306

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 45/201 (22%), Positives = 79/201 (39%), Gaps = 23/201 (11%)

Query: 30  FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPV 89
             G+      +++ + A  AR     HVL  G PG+ KTT+A+ +AR  G+ F       
Sbjct: 16  IVGKER---EIRLVLAALAARG----HVLLEGVPGVAKTTMARAIARATGLRFSRIQFTP 68

Query: 90  IAKAGDLAALLTNLEDRD-------------VLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
                D+   +   + R              V+  DE++R +   +     AM++ Q+  
Sbjct: 69  DMLPSDVIGTMV-YDQRTGEFVFRRGPVFANVVLADEVNRANPRTQSAFLEAMQEGQVT- 126

Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA 196
           + GE     S  I L+    I     V  L     DRF   + +    +E+L  I+++  
Sbjct: 127 VWGETHRLPSPFIVLATMNPIEL-EGVYPLPEAQLDRFMARVVVGHPSLEELVEIMEKYR 185

Query: 197 KLTGLAVTDEAACEIAMRSRG 217
            +T   V   A  E  + ++ 
Sbjct: 186 SITEFPVEPVARPEDIVAAQE 206


>gi|328774431|gb|EGF84468.1| hypothetical protein BATDEDRAFT_85172 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 747

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 63/304 (20%), Positives = 108/304 (35%), Gaps = 58/304 (19%)

Query: 3   DREGLLSRNVSQEDADI-------SLLRPRTLE-------EFTGQVEACSNLKVFIEAAK 48
           D   LL   ++ ED  +       S +R  TLE       +  GQ +    L+  +E   
Sbjct: 444 DEMHLLDLQITLEDMRLGMSMVQPSAMREVTLEVPKVKWTDIGGQEDVKQRLREAVEWPL 503

Query: 49  ARAEAL--------DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLAA 98
              EA           +L  GPPG  KT +A+ +A E G+NF +  GP +     G+   
Sbjct: 504 KHPEAFLKFNISPPKGILLYGPPGCSKTLMAKALATEAGLNFLAVKGPELFSKWVGESEK 563

Query: 99  LLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152
            +  +  +       ++F DEI  L++          +    D ++ +  +       L 
Sbjct: 564 AVQEIFRKARAASPSIIFFDEIDALAVRRGGD-----DASVADRVLSQLLNELDGIEPLI 618

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIA 212
             T++AAT R  +L   L  R G                  R   +  ++  D  + E  
Sbjct: 619 NVTIVAATNRPDILDTALL-RPG------------------RIDSILYVSPPDADSREQI 659

Query: 213 MRSRGTPRIA---GRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLT 269
            R + T R+A      L+++ +  E            +AAL  +  D          ++ 
Sbjct: 660 FRIQ-TNRMACSDDVDLKKLAELTEGLSGAETMAVCQEAALHAMEEDLHALCVFQRHFID 718

Query: 270 MIAR 273
            I R
Sbjct: 719 AIKR 722



 Score = 49.7 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 47/218 (21%), Positives = 77/218 (35%), Gaps = 17/218 (7%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI----AKAGDLA--ALLTNLEDR--DV 108
           +L  GPPG GKT LA+ VA E   +  + +G  I        +     +     ++   +
Sbjct: 237 ILLFGPPGTGKTLLARAVAYETSAHVITVNGSEIMSRFHGEAETRLHHIFQEANEKSPSI 296

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQ---LDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
           +F+DEI  L    +E      +      L LM G      S      R  +I AT R   
Sbjct: 297 IFLDEIDALCPKRDEGATEVHQRIVAALLTLMDGINTY-SSKTTQHHRLVVIGATNRPNA 355

Query: 166 LTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAG 223
           + + L+   RF   I +          I+Q   K    ++ D         S       G
Sbjct: 356 IDDALRRPGRFDHEIEIGIPSEIHRFEILQALLKKVPNSLNDMDLR---TISANAHGYVG 412

Query: 224 RLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
             L  +   A +   + I  E  +A +++   +    D
Sbjct: 413 ADLAAICREAGLKAIQRIEAESLNAGVVQTDDEMHLLD 450


>gi|323701589|ref|ZP_08113261.1| ATP-dependent metalloprotease FtsH [Desulfotomaculum nigrificans
           DSM 574]
 gi|323533362|gb|EGB23229.1| ATP-dependent metalloprotease FtsH [Desulfotomaculum nigrificans
           DSM 574]
          Length = 608

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 60/250 (24%), Positives = 90/250 (36%), Gaps = 31/250 (12%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T E+  G  E    L   ++  K         A+    VL  GPPG GKT LA+ VA E 
Sbjct: 156 TFEDVAGADEVKEELAEIVDFLKNPKKFNEIGAKIPKGVLLFGPPGTGKTLLARAVAGEA 215

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG       V   A  +  L    +     ++FIDEI  +       L    +
Sbjct: 216 GVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIVFIDEIDAVGRQRGAGLGGGHD 275

Query: 131 DFQLDL------MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNF 182
           + +  L      M G  P+   +        +IAAT R  +L   L    RF   I ++ 
Sbjct: 276 EREQTLNQLLVEMDGFNPNEGII--------IIAATNRPDILDPALLRPGRFDRQIVVDT 327

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            +++  + I++  AK   L    +           T      L+      A     K I 
Sbjct: 328 PDVKGREEILKVHAKGKPLDDDVDLGVLARRTPGFTGADLSNLMNEAALLAARVGKKKIG 387

Query: 243 REIADAALLR 252
               + ++ R
Sbjct: 388 MRELEDSIER 397


>gi|310766874|gb|ADP11824.1| DNA polymerase III subunit tau [Erwinia sp. Ejp617]
          Length = 640

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 53/306 (17%), Positives = 100/306 (32%), Gaps = 31/306 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+   +  GQ    + L        +        LF G  G+GKTT+A+++A+  G+N 
Sbjct: 11  RPQAFTDVVGQQHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTTIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGQCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++        + ATT    L   +  R  +   L   + E +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDQEQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  +        +     A   +A  + G+ R A  L     D A       +T    + 
Sbjct: 184 RGQLAHVLHAENIGAETRALQLLARAADGSMRDALSL----TDQAIAMGQGQVTAATVND 239

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L  L       D+  L  +  +    G   + +   +A      +A+   +   + +  
Sbjct: 240 MLGMLD------DEQPLALIEALVHADGAQVMALLNQAATRGVEWEALLVEMLALLHRVA 293

Query: 309 FIQRTP 314
            IQ  P
Sbjct: 294 MIQLLP 299


>gi|302308716|ref|NP_985735.2| AFR188Wp [Ashbya gossypii ATCC 10895]
 gi|299790761|gb|AAS53559.2| AFR188Wp [Ashbya gossypii ATCC 10895]
          Length = 827

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 52/234 (22%), Positives = 83/234 (35%), Gaps = 16/234 (6%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARA--EALDHVLFVGPPGLGKTTLAQVVARELGVNFRST 85
           ++   Q+     L +      A    E    +L  GPPG GKT++A  +A EL V F S 
Sbjct: 211 DDVIAQLMELVALPILHPEIFASTGVEPPRGILLHGPPGCGKTSIANALAGELQVPFISI 270

Query: 86  SGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           S P +           +  L    +     ++F DEI  ++   +      ME   +  +
Sbjct: 271 SAPSVVSGMSGESEKKIRDLFEEAKSLAPCLVFFDEIDAITPKRDGGAQREMERRIVAQL 330

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRG 195
           +         K N     +I AT R   L + L+   RF   I LN         I+   
Sbjct: 331 LTSMDELSFEKTNGKPVIIIGATNRPDSLDSALRRAGRFDREISLNVPNELSRMHIL--- 387

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            K     +  +   +    ++ TP   G  L+ +   A     K I +  A  A
Sbjct: 388 -KKMTSNLKVDGEIDFLKLAKLTPGFVGADLKALATAAGTCAIKRIFQNYASVA 440



 Score = 44.7 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 28/86 (32%), Positives = 35/86 (40%), Gaps = 8/86 (9%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLT 101
           K    A   VL  GPPG GKT LA+ VA E   NF S  GP +           +  + T
Sbjct: 551 KVGISAPAGVLLWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESERAIRQVFT 610

Query: 102 NLEDRD--VLFIDEIHRLSIIVEEIL 125
                   V+F DE+  L    +  L
Sbjct: 611 RARASVPCVIFFDELDALVPRRDTSL 636


>gi|257452707|ref|ZP_05618006.1| DNA polymerase III subunits gamma and tau [Fusobacterium sp.
           3_1_5R]
 gi|317059248|ref|ZP_07923733.1| DNA polymerase III gamma and tau [Fusobacterium sp. 3_1_5R]
 gi|313684924|gb|EFS21759.1| DNA polymerase III gamma and tau [Fusobacterium sp. 3_1_5R]
          Length = 478

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 51/270 (18%), Positives = 88/270 (32%), Gaps = 57/270 (21%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
              RP + +E  G+ E    LK  ++  +         LF GP G+GKTT+A+++A+ + 
Sbjct: 7   RKYRPASFQEVAGEQEIVRALKNALKNNQLSQAY----LFTGPRGVGKTTIARLIAKSVN 62

Query: 80  V-------------------------NFRSTSGPVIAKAGDLAALLTNL------EDRDV 108
                                     +             ++  L   +        + V
Sbjct: 63  CLAPKEDGEACGVCENCLSFQEGSFLDLIEIDAASNRGIDEIRLLKEKINYQPSQGKKKV 122

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
             IDE+H L+      L   +E+                    S    I ATT    +  
Sbjct: 123 YIIDEVHMLTKEAFNALLKTLEE------------------PPSHVIFILATTEPDKILP 164

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            +  R           ++D+   +Q       L + +E    I   S G+ R A  +L R
Sbjct: 165 TIISRCQ-RYDFKTLSLQDMGNQLQYILSQENLEMEEEVKELIYEASGGSMRDAISILER 223

Query: 229 VRDFAEVAHAKTITREIADAALLRLAIDKM 258
           +   A     K I+ E ++  L    + KM
Sbjct: 224 LLVSAS---EKKISLEESEKILGMTPVQKM 250


>gi|295669392|ref|XP_002795244.1| proteasome-activating nucleotidase [Paracoccidioides brasiliensis
           Pb01]
 gi|226285178|gb|EEH40744.1| proteasome-activating nucleotidase [Paracoccidioides brasiliensis
           Pb01]
          Length = 813

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 56/250 (22%), Positives = 89/250 (35%), Gaps = 26/250 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G  EA   L+  +E             +    VL VGPPG GKT LA+ VA E 
Sbjct: 343 RFSDVHGCDEAKEELQELVEFLTNPERFNSLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 402

Query: 79  GVNFRSTSGPVIA------KAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAME 130
           GV F   SG           A  +  L      +   ++FIDE+  +     E    A  
Sbjct: 403 GVPFFYMSGSEFDEVYVGVGAKRVRELFNQARAKAPAIIFIDELDAIGAKRNER-DAAYV 461

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
              L+ ++ E               +IAAT    LL   L    RF   + +   ++   
Sbjct: 462 KQTLNQLLTELDGFSQSTG----VIIIAATNYPKLLDKALTRPGRFDRRVVVGLPDVRGR 517

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             I++   K   ++       + A+ +RGTP  +G  L  + + A +  +K    ++   
Sbjct: 518 VDILKHHMKNVQISTD----VDTAVIARGTPGFSGADLENLVNQAAIHASKNKQTKVGPD 573

Query: 249 ALLRLAIDKM 258
                    M
Sbjct: 574 DFDWAKDKIM 583


>gi|221487011|gb|EEE25257.1| cell division protein, putative [Toxoplasma gondii GT1]
          Length = 978

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 45/196 (22%), Positives = 80/196 (40%), Gaps = 17/196 (8%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAKARAE-------ALDHVLFVGPPGLGKTTLAQVVAR 76
           P T  +  G  EA + L+  ++  +  ++           VL VGPPG GKT LA+ VA 
Sbjct: 75  PLTFNDLAGLTEAKTELQEVVQFLRDPSKFERLGARLPKGVLLVGPPGTGKTALARAVAT 134

Query: 77  ELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPA 128
           E GV +   SG           A  +  L +   +    ++F+DE+  +    +    P 
Sbjct: 135 EAGVPYFYASGSEFVEIYVGQGARRVRGLFSYARNHSPCIIFLDELDAVGGRRQASAGPG 194

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
             + + D  + +           SR  ++AAT RV  L   L    RF   + ++  ++ 
Sbjct: 195 AGNREHDQTLNQLLVEMDGFNQASRIVVLAATNRVDTLDPALLRPGRFDRIVHVSLPDVA 254

Query: 187 DLKTIVQRGAKLTGLA 202
             + I+Q+  +   + 
Sbjct: 255 ARELILQKYLQRVPVE 270


>gi|167042397|gb|ABZ07124.1| putative ATPase family associated with various cellular activities
           (AAA) [uncultured marine crenarchaeote HF4000_ANIW97P9]
          Length = 386

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 76/188 (40%), Gaps = 13/188 (6%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
                RP+   +  G  E+    K+F+E      +    +L VGPPG+GKTTLA + A++
Sbjct: 3   WSEKYRPKNFLDLIGNEESR---KLFVEWFTNWKKGTRPILLVGPPGIGKTTLANLAAKQ 59

Query: 78  LGVNFRSTSGPVIAKAGDLAALLT-NLEDRDV-----LFIDEIHRLSIIVE----EILYP 127
            G +  S +   +    ++  +L+  L ++ V     +FIDE+  +    +    E +  
Sbjct: 60  FGYDLISLNASDVRNKKNIHEILSPVLGNQTVLGTPMIFIDEVDGIHGRADYGGTEAIIK 119

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
            +++  + +++     +     ++ +         +      L     + +     + + 
Sbjct: 120 ILKEPTVPIVLAANTDSSDKMKSIKKVVKTIELKPLSPKLLRLCLNRILQLEGVKIDSDS 179

Query: 188 LKTIVQRG 195
           +  +V + 
Sbjct: 180 IAKLVTKS 187


>gi|193788396|dbj|BAG53290.1| unnamed protein product [Homo sapiens]
          Length = 845

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 73/192 (38%), Gaps = 33/192 (17%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI  ++ R      +L F GPPG+GKT++A+ +AR L   +   S
Sbjct: 375 EDHYGMEDVKKRILEFIAVSQLRGSTQGKILCFYGPPGVGKTSIARSIARALNREYFRFS 434

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ ++    +        
Sbjct: 435 VGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLILIDEVDKIGRGYQGDPSSALL 494

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V ++LS+   I        +  PL+DR  + I ++ 
Sbjct: 495 ELLDPEQNANFLD-------HYLDVPVDLSKVLFICTANVTDTIPEPLRDRMEM-INVSG 546

Query: 183 YEIEDLKTIVQR 194
           Y  ++   I +R
Sbjct: 547 YVAQEKLAIAER 558


>gi|226290113|gb|EEH45597.1| proteasome-activating nucleotidase [Paracoccidioides brasiliensis
           Pb18]
          Length = 813

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 57/260 (21%), Positives = 91/260 (35%), Gaps = 27/260 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G  EA   L+  +E             +    VL VGPPG GKT LA+ VA E 
Sbjct: 343 RFSDVHGCDEAKEELQELVEFLTNPERFNSLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 402

Query: 79  GVNFRSTSGPVIA------KAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAME 130
           GV F   SG           A  +  L      +   ++FIDE+  +     E    A  
Sbjct: 403 GVPFFYMSGSEFDEVYVGVGAKRVRELFNQARAKAPAIIFIDELDAIGAKRNER-DAAYV 461

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
              L+ ++ E               +IAAT    LL   L    RF   + +   ++   
Sbjct: 462 KQTLNQLLTELDGFSQSTG----VIIIAATNYPKLLDKALTRPGRFDRRVVVGLPDVRGR 517

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             I++   K   ++       + A+ +RGTP  +G  L  + + A +  +K    ++   
Sbjct: 518 VDILKHHMKNVQISTD----VDTAIIARGTPGFSGADLENLVNQAAIHASKNKQTKVGPM 573

Query: 249 ALLRLAI-DKMGFDQLDLRY 267
                     MG +      
Sbjct: 574 DFDWAKDKIMMGAEARSRVM 593


>gi|4455359|emb|CAB36769.1| putative protein [Arabidopsis thaliana]
 gi|7269654|emb|CAB79602.1| putative protein [Arabidopsis thaliana]
          Length = 726

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 50/282 (17%), Positives = 97/282 (34%), Gaps = 42/282 (14%)

Query: 6   GLLSRNVSQEDADISLLRPR---------TLEEFTGQVEACSNLKVFIEAAKARAEALDH 56
            + S+ V+ ++     +RP          T  +     E   +L+  +     R +    
Sbjct: 383 NIDSKEVAPDNEFEKRIRPEVIPANEIGVTFADIGSLDETKESLQELVMLPLRRPDLFKG 442

Query: 57  --------VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTN 102
                   +L  GPPG GKT +A+ +A E G +F + S   I          ++ AL T 
Sbjct: 443 GLLKPCRGILLFGPPGTGKTMMAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTL 502

Query: 103 LED--RDVLFIDEIH-----RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFT 155
                  ++F+DE+      R  +   E +     +F              +     R  
Sbjct: 503 AAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFM-------THWDGLMSNAGDRIL 555

Query: 156 LIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRS 215
           ++AAT R   L   +  RF   I +    +E  + I++    L     T+    +    +
Sbjct: 556 VLAATNRPFDLDEAIIRRFERRIMVGLPSVESREKILR---TLLSKEKTEN--LDFQELA 610

Query: 216 RGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257
           + T   +G  L+     A     + + ++       R   ++
Sbjct: 611 QMTDGYSGSDLKNFCTTAAYRPVRELIKQECLKDQERRKREE 652


>gi|414046|emb|CAA52291.1| Lon protease-like protein [Homo sapiens]
          Length = 845

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 73/192 (38%), Gaps = 33/192 (17%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI  ++ R      +L F GPPG+GKT++A+ +AR L   +   S
Sbjct: 375 EDHYGMEDVKKRILEFIAVSQLRGSTQGKILCFYGPPGVGKTSIARSIARALNREYFRFS 434

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ ++    +        
Sbjct: 435 VGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLILIDEVDKIGRGYQGDPSSALL 494

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V ++LS+   I        +  PL+DR  + I ++ 
Sbjct: 495 ELLDPEQNANFLD-------HYLDVPVDLSKVLFICTANVTDTIPEPLRDRMEM-INVSG 546

Query: 183 YEIEDLKTIVQR 194
           Y  ++   I +R
Sbjct: 547 YVAQEKLAIAER 558


>gi|77927260|gb|ABB05505.1| PEX6 [Trypanosoma brucei]
          Length = 982

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 58/239 (24%), Positives = 85/239 (35%), Gaps = 25/239 (10%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH---------VLFVGPPGLGKTTL 70
           + L+P    +  G  +A   L+  I+      E L +         +LF GPPG GKT L
Sbjct: 675 TKLQPVRWSDVGGLEDAKRELREMIQLPLLYPELLGNGGNAKHGAGILFYGPPGCGKTLL 734

Query: 71  AQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIV- 121
           A+ VA E+ +NF +  GP +          ++  L     D    ++F DE+  L+    
Sbjct: 735 AKAVATEMNMNFMAVKGPELINQYVGESEKNIRLLFQRARDNSPCIIFFDELDALAPARG 794

Query: 122 -EEILYPAMEDFQLDLMVGEG--PSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGI 176
            +     AM+     L+V       +RS      +  +IAAT R  LL   L    RF  
Sbjct: 795 AKGDAGGAMDRVVAQLLVEVDGVGHSRSDGTAAGKVFIIAATNRPDLLDPALLRPGRFDK 854

Query: 177 PIRLNFYEIEDLKTIVQRGA--KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
              L        + +  R    K       D  A    M    T      L      FA
Sbjct: 855 LCYLGIPSTRSEQLVALRALTRKFHLAEDVDLEALLQPMTLDYTGADLFALCSDAMMFA 913


>gi|268637492|ref|XP_629167.2| ATP-dependent metalloprotease [Dictyostelium discoideum AX4]
 gi|256012808|gb|EAL60761.2| ATP-dependent metalloprotease [Dictyostelium discoideum AX4]
          Length = 767

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 51/255 (20%), Positives = 88/255 (34%), Gaps = 25/255 (9%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAK-------ARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           P + ++  G  E    L+  ++            A+    VL  G PG GKT LA+ +A 
Sbjct: 296 PTSFDDVKGIQEVKEELEEIVDYLLHPTKYNSIGAKLPKGVLLSGEPGTGKTLLARAIAG 355

Query: 77  ELGVNFRSTSGPVIAKA------GDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPA 128
           E GV+F  T+G    +         +  L     ++   ++FIDEI  +          A
Sbjct: 356 EAGVSFLYTTGSSFDEKYVGVGSRRVRELFNAAREKQPCIIFIDEIDAVGKSRNT----A 411

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
             +  L  ++ E           S+  +I AT     L   L    RF   I +   +++
Sbjct: 412 HHNETLLQLLTEMDGFEGN----SQIMIIGATNAPNSLDPALLRPGRFDRHISVPIPDMK 467

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
               I+    K     V  +A          T      L+      A     +TI+ +  
Sbjct: 468 GRSEIIDHYLKKVKHTVEVKADTIARATPGFTGADLSNLINTAAIKAVQNGKETISIKQI 527

Query: 247 DAALLRLAIDKMGFD 261
           D A   + + +   +
Sbjct: 528 DDARDDILMGRARLN 542


>gi|167629386|ref|YP_001679885.1| ATP-dependent metalloprotease ftsh [Heliobacterium modesticaldum
           Ice1]
 gi|167592126|gb|ABZ83874.1| ATP-dependent metalloprotease ftsh [Heliobacterium modesticaldum
           Ice1]
          Length = 601

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 63/248 (25%), Positives = 91/248 (36%), Gaps = 27/248 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  E    L+  +E  K         A+    VL  GPPG GKT LA+ VA E 
Sbjct: 156 TFDDVAGADEVKEELQEVVEFLKHPKKFVELGAKIPKGVLLFGPPGTGKTLLARAVAGEA 215

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG       V   A  +  L    +     ++FIDEI  +       L    +
Sbjct: 216 GVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNSPCIVFIDEIDAVGRQRGAGLGGGHD 275

Query: 131 DFQLD----LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
           + +      L+  +G +A    I      +IAAT R  +L   L    RF   I ++  +
Sbjct: 276 EREQTLNQLLVEMDGFAANEGII------IIAATNRPDILDPALLRPGRFDRQIVVDRPD 329

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           I   K I+   AK   L  T +           T      +L      A     + I   
Sbjct: 330 IRGRKEILGVHAKGKPLDETIDLDVLARRTPGFTGADLANMLNEAALLAARRGVRRIGMH 389

Query: 245 IADAALLR 252
             + A+ R
Sbjct: 390 ELEDAIER 397


>gi|187920723|ref|YP_001889755.1| AAA ATPase central domain-containing protein [Burkholderia
           phytofirmans PsJN]
 gi|187719161|gb|ACD20384.1| AAA ATPase central domain protein [Burkholderia phytofirmans PsJN]
          Length = 634

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 61/260 (23%), Positives = 99/260 (38%), Gaps = 29/260 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNL---KVFIEAAKA----RAEALDHVLFVGPPGLGKTT 69
           A    LR    ++  G  EA + L   + ++   K        A   +L VG PG+GKT 
Sbjct: 182 ARAPALR---FDDVIGAGEAKTALADIRGYLSDPKQFTSMGVRAPCGILMVGGPGVGKTR 238

Query: 70  LAQVVARELGVNFRSTSGP---------VIAKAGDLAALLTNLEDRDVLFIDEIHRLSII 120
           LAQ +A E G NF S +G           I K   L  L        V+FIDE   L+  
Sbjct: 239 LAQALAGECGANFISITGSYFSAKYYGVGIQKVKHLFELARKNAP-TVIFIDEADGLAKR 297

Query: 121 VEEILYP--AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGI 176
            +    P  A  +  ++ ++ E     S +       ++AAT     L   L+   RF  
Sbjct: 298 TDTGSGPVEAESNRIINQLLAEMDGFASNEG----VIIVAATNHPDNLDEALRRPGRFDR 353

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRG-TPRIAGRLLRRVRDFAEV 235
            +++   + ED   I +  A+       D    ++A  + G +P     ++ +    A  
Sbjct: 354 TVQVRLPDREDRAKIFRFYAEKLKSKAADIDYDQLARLTTGLSPATVAMVVNQAGLVARK 413

Query: 236 AHAKTITREIADAALLRLAI 255
           +    IT +    A+    I
Sbjct: 414 SGDTEITSKHFMEAIKIARI 433


>gi|195952935|ref|YP_002121225.1| ATP-dependent protease La [Hydrogenobaculum sp. Y04AAS1]
 gi|195932547|gb|ACG57247.1| ATP-dependent protease La [Hydrogenobaculum sp. Y04AAS1]
          Length = 807

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 49/235 (20%), Positives = 85/235 (36%), Gaps = 40/235 (17%)

Query: 34  VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA 93
                 L V  +  K +      + F+GPPG+GKT+L Q +A+  G  F   S   I   
Sbjct: 343 ERIIEYLSV-RKLTKGKGSKSTILCFIGPPGVGKTSLGQSIAKATGRKFVRISLGGIRDE 401

Query: 94  GDLA----------------ALLTNLEDRDVLFIDEIHRLSIIVE--------EILYPAM 129
            ++                 A+        ++ +DEI +LS+  +        E+L P  
Sbjct: 402 AEIRGHRRTYVGAMPGRIIQAIKQAGVKNPLIMLDEIDKLSVSFQGDPAAALLEVLDPEQ 461

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
                DL +G          +LS    +A   RV  +  PL DR  + + L+ Y  E+  
Sbjct: 462 NKSFTDLYIG-------HPFDLSEVLFVATGNRVDTIPQPLLDRMEV-LYLSGYSEEEKL 513

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            I +    L    + D    E  +           +L  +R +   A  + + ++
Sbjct: 514 HIAKN--HLLPAIIKDHGFKESEINIEDE-----AILEVIRSYTREAGVRNLKQK 561


>gi|66954652|dbj|BAD99306.1| FtsH protease [Solanum lycopersicum]
          Length = 672

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 59/274 (21%), Positives = 96/274 (35%), Gaps = 23/274 (8%)

Query: 26  TLEEFTG-----Q--VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G     Q   E    LK   + A   A+     L VGPPG GKT LA+ +A E 
Sbjct: 208 TFDDVAGVNEAKQDFQEIVEFLKTPEKFAAVGAKIPKGFLLVGPPGTGKTLLAKAIAGEA 267

Query: 79  GVNFRSTSGPVIA------KAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG           A  +  L    +     ++FIDEI  +       +    +
Sbjct: 268 GVPFFSLSGSEFIEMFVGVGASRVRDLFNKAKQNSPCIIFIDEIDAVGRQRGTGIGGGND 327

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E               +IAAT R  +L   L    RF   + +   +I 
Sbjct: 328 EREQTLNQLLTEMDGFTGNTG----VIVIAATNRPEILDQALLRPGRFDRQVTVGLPDIR 383

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++  +    L      +         +      L+      A       IT +  
Sbjct: 384 GREEILKVHSNNKKLDKDVSLSVIAMRTPGFSGADLANLMNEAAILAGRRGKDKITSKEI 443

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV 280
           D ++ R+     G    D +   ++A +  G  V
Sbjct: 444 DDSIDRIVAGMEGTTMTDGKNKILVAYHEVGHAV 477


>gi|282859187|ref|ZP_06268309.1| ATP-dependent metallopeptidase HflB [Prevotella bivia JCVIHMP010]
 gi|282588006|gb|EFB93189.1| ATP-dependent metallopeptidase HflB [Prevotella bivia JCVIHMP010]
          Length = 707

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 67/284 (23%), Positives = 113/284 (39%), Gaps = 33/284 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ  A   ++  +E  +          +     L +GPPG GKT LA+ VA E 
Sbjct: 194 TFKDVAGQEGAKQEVEEIVEFLRNPGKYTELGGKIPAGALLIGPPGTGKTLLAKAVAGEA 253

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM- 129
           GV F S SG       V   A  +  +    +++   ++FIDEI  +     +   P+M 
Sbjct: 254 GVPFFSMSGSDFVEMFVGVGASRVRDVFHQAKEKAPCIIFIDEIDAVGRARSKN--PSMG 311

Query: 130 ----EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183
                +  L+ ++ E     +     S   ++AAT RV +L   L    RF   I ++  
Sbjct: 312 GNDERENTLNALLTEMDGFGTN----SGVIVMAATNRVDMLDKALLRAGRFDRQIHVDLP 367

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           ++ + K I +       L  T     +I + SR TP  +G  +  V + A +  A+  ++
Sbjct: 368 DLPERKAIFKVHMAKLKLDTT----VDIDLLSRQTPGFSGADIANVCNEAALIAARHSSK 423

Query: 244 EIADAA-LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETIS 286
           +I     L  +     G ++          R       G  TIS
Sbjct: 424 QIGKQDFLDAIDRIIGGLEKKTKVMTAAEKRTIALHEAGHATIS 467


>gi|118602186|ref|YP_903401.1| ATP-dependent metalloprotease FtsH [Candidatus Ruthia magnifica
           str. Cm (Calyptogena magnifica)]
 gi|118567125|gb|ABL01930.1| membrane protease FtsH catalytic subunit [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
          Length = 640

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 54/276 (19%), Positives = 97/276 (35%), Gaps = 24/276 (8%)

Query: 25  RTLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
            T ++  G  EA  ++   +       +  K   +    VL VGPPG GKT LA+ +A E
Sbjct: 148 TTFDDVAGVDEAKDDVSELVDFLSNPGKFTKVGGKIPKGVLLVGPPGTGKTLLAKAIAGE 207

Query: 78  LGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
             V F   SG       V   A  +  +    +     ++FIDEI  +       +    
Sbjct: 208 ADVPFFFISGSDFVEMFVGVGASRVRDMFEQAKKNAPCIIFIDEIDAVGRQRGAGMGGGH 267

Query: 130 EDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           ++ +  L  M+ E       +       +IAAT R  +L   L    RF   + ++  +I
Sbjct: 268 DEREQTLNQMLVEMDGFEGSEG----VIVIAATNRPDVLDPALLRPGRFDRQVMVDLPDI 323

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
                I++   +   +A   ++          +      L       A     K +  + 
Sbjct: 324 NGRDAILKIHMRKLPIAKNVKSINIAKGTPGFSGADLANLTNEAALIAAGKGKKLVGMQE 383

Query: 246 ADAALLRLAIDKMGFD-QLDLRYLTMIARNFGGGPV 280
            + A  ++ +        +D     MIA +  G  +
Sbjct: 384 FEKAKDKIMMGSERKSMAMDETEKEMIAYHEAGHAI 419


>gi|17545910|ref|NP_519312.1| DNA polymerase III subunits gamma and tau [Ralstonia solanacearum
           GMI1000]
 gi|17428205|emb|CAD14893.1| probable dna polymerase III (subunits tau and gamma) protein
           [Ralstonia solanacearum GMI1000]
          Length = 728

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 56/278 (20%), Positives = 97/278 (34%), Gaps = 34/278 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPR      GQ      L   +E      + L H  LF G  G+GKTTL++++A+ L   
Sbjct: 11  RPRDFTTLVGQEHVVKALTHALE-----QQRLHHAYLFTGTRGVGKTTLSRILAKSLNCI 65

Query: 82  FRSTSGPVIAKA-GDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAMEDFQ 133
                G + A+  G   A       R V +I+        +  ++ +++  +Y       
Sbjct: 66  GTDGQGGITAQPCGVCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDRAVYAPTAGRF 125

Query: 134 LDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
              M+ E             ++++        I ATT    +   +  R  +   L    
Sbjct: 126 KVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRC-LQFNLKQMP 184

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
              + + + R     G+A    A   +A  ++G+ R A  L     D A    A  +T  
Sbjct: 185 PGHIVSHLDRILGEEGIAHEPNALRLLASAAQGSMRDALSL----TDQAIAYSAGEVTEA 240

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGI 282
                L  +    +      +R L  +A   G   +GI
Sbjct: 241 AVRGMLGAIDQSYL------VRLLDALADENGATLIGI 272


>gi|82594547|ref|XP_725471.1| cell division protein FtsH [Plasmodium yoelii yoelii str. 17XNL]
 gi|23480490|gb|EAA17036.1| cell division protein ftsh homolog [Plasmodium yoelii yoelii]
          Length = 867

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 59/233 (25%), Positives = 90/233 (38%), Gaps = 28/233 (12%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAKAR-------AEALDHVLFVGPPGLGKTTLAQVVAR 76
           P   +E  G  E+   L   ++  K R       A     VL VGPPG GKT LA+ VA 
Sbjct: 160 PVKFDEIAGIDESKLELLEVVDFIKNRERYQEMGARMPKGVLLVGPPGSGKTMLARAVAT 219

Query: 77  ELGVNFRSTSGPVI------AKAGDLAALLTNLED--RDVLFIDEIHRL----SIIVEEI 124
           E  V +  TSGP          A  +  L ++       ++FIDEI  +    S      
Sbjct: 220 EANVPYIYTSGPEFIEIYVGQGAKRIRQLFSHARSVAPSIVFIDEIDAIGGKRSPSASNG 279

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNF 182
                 D  L+ ++ E     +         +I AT R+  L + L    RF   + +  
Sbjct: 280 AGQKEHDQTLNQLLVEMDGFSNTV----HIMVIGATNRIDTLDSALLRPGRFDRIVYVPL 335

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
            ++   K I++   K     +    A +I   SR TP  +G  L  + + A +
Sbjct: 336 PDVSGRKKILEIYIKKIKSNL---NANDIERMSRLTPGFSGADLENLVNEATI 385


>gi|312880130|ref|ZP_07739930.1| ATP-dependent proteinase [Aminomonas paucivorans DSM 12260]
 gi|310783421|gb|EFQ23819.1| ATP-dependent proteinase [Aminomonas paucivorans DSM 12260]
          Length = 788

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 63/274 (22%), Positives = 102/274 (37%), Gaps = 45/274 (16%)

Query: 10  RNVSQEDADISLLRPRTLEE-FTGQVEACSNLKVFIEAAKARAEAL-DHVL-FVGPPGLG 66
           +  S++  D+ L R   L+E   G  E    +  F+   K   + +  HVL FVGPPG+G
Sbjct: 297 QQQSKDRLDVELAR-TVLDEDHYGLDEVKGRILEFLSVRKLAGKEMRGHVLCFVGPPGVG 355

Query: 67  KTTLAQVVARELGVNFRSTSGPVIAKAGDLA----------------ALLTNLEDRDVLF 110
           KT+LA+ +AR L   F   S   I    ++                  +        VL 
Sbjct: 356 KTSLARSIARSLNRRFVHMSLGGIRDEAEIRGHRRTYVGALPGRILQKIRQAGTRNPVLL 415

Query: 111 IDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTR 162
           +DEI ++        S  + E+L P       D           V  +LSR   +     
Sbjct: 416 LDEIDKVGSDFRGDPSAALLEVLDPEQNHAFTD-------HFLEVPFDLSRVMFLTTANV 468

Query: 163 VGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
              +  PL DR  +      Y  E+   I +R   L    + +    ++A      PRI 
Sbjct: 469 THSIPRPLLDRMEVISIPG-YVAEEKVHIARR--HLLPKILRENGLEDLA------PRIT 519

Query: 223 GRLLRRVR-DFAEVAHAKTITREIADAALLRLAI 255
            R L ++  D+   A  + + R+++  A      
Sbjct: 520 DRALEKIIGDYTREAGVRNLDRQLSRIARKLARR 553


>gi|282897116|ref|ZP_06305118.1| Peptidase M41, FtsH [Raphidiopsis brookii D9]
 gi|281197768|gb|EFA72662.1| Peptidase M41, FtsH [Raphidiopsis brookii D9]
          Length = 628

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 60/266 (22%), Positives = 96/266 (36%), Gaps = 23/266 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
             ++  G  EA   L+  +   K         A+    VL VGPPG GKT LA+ +A E 
Sbjct: 171 KFDDVAGIEEAKEELQEVVTFLKQPEKFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA 230

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG           A  +  L    +D    ++FIDEI  +       +    +
Sbjct: 231 GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKDNAPCIIFIDEIDAVGRQRGAGIGGGND 290

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E               +IAAT R  +L + L    RF   + ++  +I+
Sbjct: 291 EREQTLNQLLTEMDGFEGNTG----IIIIAATNRPDVLDSALLRPGRFDRQVTVDAPDIK 346

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
               I++  A+   L                +      LL            + IT    
Sbjct: 347 GRLEILEVHARNKKLDQGVSLEAIARRTPGFSGADLANLLNEAAILTARRRKEAITLLEI 406

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIA 272
           D A+ R+     G   +D +   +IA
Sbjct: 407 DDAVDRVVAGMEGTPLVDSKSKRLIA 432


>gi|254901218|ref|ZP_05261142.1| hypothetical protein LmonJ_15472 [Listeria monocytogenes J0161]
          Length = 372

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 43/181 (23%), Positives = 64/181 (35%), Gaps = 18/181 (9%)

Query: 28  EEFTGQVE-ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV------ 80
           +E  GQ E     L           E    ++F GP G+GKT  A+++   L        
Sbjct: 134 DEIVGQDEALVEILSTLYPLVNRLDEKPIVMMFYGPAGVGKTEAAKIINDSLDQGGILRQ 193

Query: 81  --------NFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
                   +F S       +A  LA  L   E   +LF DE +R S  +    +   ++ 
Sbjct: 194 QMSMFQTSDFASYLFGGTLEAPSLAKDLMKREGNVILF-DEFNRCSPYLYSAFFQMFDEG 252

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
                  E     S+ I  + F   +     G L  PL  RF   I  N    E  KT++
Sbjct: 253 IYIDKNYEVGLKNSIIICTANFG--SMEEIFGTLGAPLFSRFDHFIAFNDLSTEAKKTLI 310

Query: 193 Q 193
           +
Sbjct: 311 E 311


>gi|194476906|ref|YP_002049085.1| DNA polymerase, gamma and tau subunits [Paulinella chromatophora]
 gi|171191913|gb|ACB42875.1| DNA polymerase, gamma and tau subunits [Paulinella chromatophora]
          Length = 584

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 83/221 (37%), Gaps = 19/221 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+ L++  GQ    + L      A          LF GP G GKT+ A+++AR L    
Sbjct: 13  RPQRLDQLVGQEAIATTLS----NALVYRRIATAYLFSGPRGTGKTSSARILARSLNCLN 68

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
             +         +L   +T+    DV+ ID      +  +  ++E   +  ++      +
Sbjct: 69  SDSPTTEPCGKCELCISITSGRALDVIEIDAASNTGVENIRELIERSKFSPVQARWKVYV 128

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++    +   I ATT    +   +  R              L
Sbjct: 129 IDECHMLSAAAFNALLKTLEEPQPKLLFILATTDPQRMLTTVISRCQ-RFDFRRVCPITL 187

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           K  +   A    ++++ EA   +A  ++G+ R A  LL ++
Sbjct: 188 KGHLVFIADREDISISVEAISLVAKSAQGSLRDAENLLDQL 228


>gi|28493677|ref|NP_787838.1| DNA polymerase III subunits gamma and tau [Tropheryma whipplei str.
           Twist]
 gi|28476719|gb|AAO44807.1| DNA polymerase III gamma and tau subunit [Tropheryma whipplei str.
           Twist]
          Length = 522

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 66/307 (21%), Positives = 103/307 (33%), Gaps = 42/307 (13%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQ 72
            E A     RP    E  GQ      L   ++        L H  LF GP G GKTT A+
Sbjct: 4   SEQALYRRYRPEVFSEMVGQDGVTGLLSSALD-----NNRLGHAYLFSGPRGCGKTTSAR 58

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALL----TNLEDRDVLFIDEIHRLSIIVEEILY-- 126
           V AR L       +GP  +  G   + +    +     DV+ ID      +     L   
Sbjct: 59  VFARCLNC----VNGPTSSPCGKCQSCIDLGRSGNGSLDVIEIDAASHNGVDDARALRER 114

Query: 127 ----PAMEDFQLDL------MVGEGPSA--RSVKINLSRFTLIAATTRVGLLTNPLQDRF 174
               PA   F++ +      +  +G +A  + V+   +    I ATT    +   ++ R 
Sbjct: 115 AIFAPAQSRFRIFILDEAHMVTTQGFNALLKIVEEPPAHVKFIFATTEPEKVLGTIRSR- 173

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
                        ++  +        + V D     +     G+ R    +L ++     
Sbjct: 174 TFSYPFALVSASVMQPYIADICNKEKIRVEDGVLPLVVRAGGGSVRDTLSILDQLM---- 229

Query: 235 VAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGG-GPVGIETISAGLSEPR 293
                      +   LLRLA D + +D         IA + G      IE +     EP 
Sbjct: 230 ---VGKCITYESTVGLLRLAPDILLYD-----LFLAIAEDDGATAFASIEKVVEAGYEPV 281

Query: 294 DAIEDLI 300
             IEDL+
Sbjct: 282 QFIEDLM 288


>gi|197103834|ref|YP_002129211.1| DNA polymerase III subunits gamma and tau [Phenylobacterium
           zucineum HLK1]
 gi|196477254|gb|ACG76782.1| DNA polymerase III subunits gamma and tau [Phenylobacterium
           zucineum HLK1]
          Length = 605

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 50/232 (21%), Positives = 80/232 (34%), Gaps = 21/232 (9%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RPRT E+  GQ      L+     A A        +  G  G+GKTT A+++AR L
Sbjct: 47  ARKYRPRTFEDLYGQEAMVRTLR----NAFASGRIAHAFMLTGVRGVGKTTTARLLARAL 102

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYP-----AMED 131
                +   P +    +       +E R  DVL +D   R  +     L        +E 
Sbjct: 103 NYETATVHEPTLDLKEEGLHCRAIIEGRHMDVLELDAASRTGVNDIRELLDGVRYAPVEA 162

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT +  +   +  R      L  
Sbjct: 163 RYKVYIIDEVHMLSTGAFNALLKTLEEPPPHAKFIFATTEIRKVPVTILSRTQ-RFDLRR 221

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
            E E L   ++   +  G  V  E    IA  + G+ R    +L +    AE
Sbjct: 222 VEPEMLVKNLEMICENEGARVEAEGLMLIARAAEGSVRDGQSMLDQAIVQAE 273


>gi|297803286|ref|XP_002869527.1| AAA-type ATPase family protein [Arabidopsis lyrata subsp. lyrata]
 gi|297315363|gb|EFH45786.1| AAA-type ATPase family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 726

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 43/218 (19%), Positives = 78/218 (35%), Gaps = 37/218 (16%)

Query: 6   GLLSRNVSQEDADISLLRPR---------TLEEFTGQVEACSNLKVFIEAAKARAEALDH 56
            + S+ V+ ++     +RP          T  +     E   +L+  +     R +    
Sbjct: 383 NIDSKEVAPDNEFEKRIRPEVIPANEIGVTFADIGSLDETKESLQELVMLPLRRPDLFKG 442

Query: 57  --------VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTN 102
                   +L  GPPG GKT +A+ +A E G +F + S   I          ++ AL T 
Sbjct: 443 GLLKPCRGILLFGPPGTGKTMMAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTL 502

Query: 103 LED--RDVLFIDEIH-----RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFT 155
                  ++F+DE+      R  +   E +     +F              +     R  
Sbjct: 503 AAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFM-------THWDGLMSNAGDRIL 555

Query: 156 LIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           ++AAT R   L   +  RF   I +    +E  + I++
Sbjct: 556 VLAATNRPFDLDEAIIRRFERRIMVGLPSVESREKILR 593


>gi|240849897|ref|YP_002971286.1| DNA polymerase III subunits gamma and tau [Bartonella grahamii
           as4aup]
 gi|240267020|gb|ACS50608.1| DNA polymerase III subunits gamma and tau [Bartonella grahamii
           as4aup]
          Length = 646

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 51/254 (20%), Positives = 90/254 (35%), Gaps = 21/254 (8%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+   +  GQ      L    E  +         +  G  G+GKTT A+++AR L
Sbjct: 14  ARKYRPQNFSDLIGQEAMVRTLTNAFEKGRIAQAW----MLTGIRGVGKTTTARILARAL 69

Query: 79  GVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
               +    P  V+   G+    +      DV+ +D      I  +  I+E+I Y  +  
Sbjct: 70  NYKTKDIDQPTTVLDSLGEHCTQIIEGRHIDVIEMDAASHTGIDDIREIIEQIRYRPVSA 129

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++   S    I ATT +  +   +  R      L  
Sbjct: 130 RYKVYIIDEVHMLSTQAFNGLLKTLEEPPSHVKFIFATTEIRKVPITILSRCQ-RFDLRR 188

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            E + L   +++ AK   + V D+A   IA  + G+ R A  +  +    +         
Sbjct: 189 IESKALSAHLRQIAKYEKVEVEDQALSMIARAAEGSARDALSIFDQAIAHSNGNVNAIAV 248

Query: 243 REIADAALLRLAID 256
           R +   A     ID
Sbjct: 249 RTMLGLADQARIID 262


>gi|188534599|ref|YP_001908396.1| DNA polymerase III subunit tau [Erwinia tasmaniensis Et1/99]
 gi|188029641|emb|CAO97520.1| DNA polymerase III subunit tau [Erwinia tasmaniensis Et1/99]
          Length = 644

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 82/242 (33%), Gaps = 25/242 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+   +  GQ    + L        +        LF G  G+GKTT+A+++A+  G+N 
Sbjct: 11  RPQAFTDVVGQQHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTTIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
            +          D    +      D++ ID   R  +     L       PA   F++ L
Sbjct: 65  ETGITATPCGQCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124

Query: 137 M--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +               ++++        + ATT    L   +  R  +   L   + + +
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDQDQI 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +  ++   +   +     A   +A  + G+ R A  L     D A       +T    + 
Sbjct: 184 RGQLEHVLQAEKIDAETRALQLLARAADGSMRDALSL----TDQAIAMGQGQVTTATVND 239

Query: 249 AL 250
            L
Sbjct: 240 ML 241


>gi|126466018|ref|YP_001041127.1| AAA family ATPase, CDC48 subfamily protein [Staphylothermus marinus
           F1]
 gi|126014841|gb|ABN70219.1| AAA family ATPase, CDC48 subfamily [Staphylothermus marinus F1]
          Length = 733

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 53/244 (21%), Positives = 88/244 (36%), Gaps = 24/244 (9%)

Query: 9   SRNVSQEDADISLLRPR-TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLF 59
           S  V +E  + + + P+ T E+     EA   ++  +E      E   H        +L 
Sbjct: 168 SEPVKEEVIERARMIPKVTWEDIGDLEEAKQKIREIVELPLKHPELFKHLGIEPPKGILL 227

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFI 111
            GPPG GKT LA+ +A E+G  F + +GP I           L  +    E     ++FI
Sbjct: 228 YGPPGTGKTLLAKALANEIGAYFTAINGPEIMSKFYGESEQRLREIFEEAERNAPAIIFI 287

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DEI  ++   EE     +       +V +  +         +  +I AT R   L   L+
Sbjct: 288 DEIDSIAPKREE-----VTGEVEKRVVAQLLALMDGLKERGKVIVIGATNRPDALDPALR 342

Query: 172 D--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
              RF   I +   +    + I+    +   L    +      M    T      L++  
Sbjct: 343 RPGRFDREIEIPPPDKRARREILAVHTRNMPLEEDVDLDKIAEMTHGYTGADLAALVKEA 402

Query: 230 RDFA 233
              A
Sbjct: 403 AMAA 406



 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 57/241 (23%), Positives = 84/241 (34%), Gaps = 23/241 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
              +  G  +    L+  +E      E            +L  GPPG GKT LA+ VA E
Sbjct: 460 RWSDIGGLEDVKQQLREAVEWPMKHPEVFEQMGIEPPKGILLFGPPGTGKTLLAKAVATE 519

Query: 78  LGVNFRSTSGPVI--AKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAM 129
            G NF +  GP I     G+    +  +  R       V+F DEI  ++       Y   
Sbjct: 520 SGANFIAVRGPEILSKWVGESEKAIRQIFRRARQVAPAVVFFDEIDSIAPARG---YRHD 576

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                D +V +  +       L +  +IAAT R  +L   L    RF   I +   + + 
Sbjct: 577 TSGVTDRIVNQLLTELDGIEPLRKVVVIAATNRPDILDPALLRPGRFDRLIYVPPPDFKA 636

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSR-GTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
              I +   K   LA  D    E+A R+   T      + R     A     K    E+ 
Sbjct: 637 RIEIFKVHTKKMPLA-PDVDLEELARRTEGYTGADIAAVCREAAILALREEFKVRPVEMK 695

Query: 247 D 247
            
Sbjct: 696 H 696


>gi|126178781|ref|YP_001046746.1| replication factor C large subunit [Methanoculleus marisnigri JR1]
 gi|150415664|sp|A3CTR4|RFCL_METMJ RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|125861575|gb|ABN56764.1| replication factor C large subunit [Methanoculleus marisnigri JR1]
          Length = 454

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 53/326 (16%), Positives = 113/326 (34%), Gaps = 44/326 (13%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
            +   RP+ L++  G   A    ++  E A+  +     ++  G PG GKT+ A  +A +
Sbjct: 3   WVEKYRPQHLQDVVGNSGAV---RLIYEWARDWSRQKKPLILYGKPGTGKTSSAYALAND 59

Query: 78  LGVNFRSTSGPV---------IAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           +       +            +A AG   A L+    + +L +DE           L+  
Sbjct: 60  MNWEVVELNASDQRTKAALERVAGAGSTTASLSGASRKLIL-LDEADN--------LHGQ 110

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
            +      +V    +A+   I ++     + T  +  +T P        ++    +   +
Sbjct: 111 ADRGGAKAIVEIIAAAQQPIILIAN-DYYSLTRELKAVTEP--------VQFRALQARSI 161

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              +++     G+A    A  +IA R+ G  R A  +L     +A     +         
Sbjct: 162 VPRLRQICAAEGVACDPAALDDIANRAGGDMRAAVNML-----YAAAIGKEH-------- 208

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308
            L    +     D+    +  + A   G     +  ++  + +  DAIE  +E  +    
Sbjct: 209 -LAAGDVHTSAKDERSTIFELVGATFKGKRDADLLRMAVEVEDTPDAIEQWLEGNLDHMP 267

Query: 309 FIQRTPRGRLLMPIAWQHLGIDIPHR 334
            +     G   +  A +++G     +
Sbjct: 268 DLASRAEGYACLARADEYIGRTYRRQ 293


>gi|78223596|ref|YP_385343.1| FtsH peptidase [Geobacter metallireducens GS-15]
 gi|78194851|gb|ABB32618.1| FtsH peptidase, Metallo peptidase, MEROPS family M41 [Geobacter
           metallireducens GS-15]
          Length = 619

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 56/250 (22%), Positives = 91/250 (36%), Gaps = 31/250 (12%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAK-------ARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G   A   L+  ++  +          +    VL VGPPG GKT LA+ VA E 
Sbjct: 173 TFDDVAGMENAKLELREIVDYLRDPKKFQQIGGKVPKGVLLVGPPGTGKTLLARAVAGEA 232

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAME 130
           GV F S +        V   AG +  L    +     ++FIDEI  +       L    +
Sbjct: 233 GVTFLSITASQFIEMFVGVGAGRVRDLFATAKKSAPSIIFIDEIDAVGRSRGAGLGGGHD 292

Query: 131 DFQLDL------MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNF 182
           + +  L      M G  P    +        ++AAT R  +L   L    RF   + ++ 
Sbjct: 293 EREQTLNQLLSEMDGFDPHDEVI--------VMAATNRPDVLDAALLRPGRFDRHVVIDR 344

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            +  D + I+Q   +   +      A         T      L+      A   ++ T+T
Sbjct: 345 PDWRDREKILQVHTRKIPMDKDVSLAVIARGTPGMTGADLENLVNEAAILAARENSSTVT 404

Query: 243 REIADAALLR 252
            E  + A  +
Sbjct: 405 MEHLERAKDK 414


>gi|328876465|gb|EGG24828.1| peptidase S16 [Dictyostelium fasciculatum]
          Length = 1046

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 71/190 (37%), Gaps = 33/190 (17%)

Query: 26  TLE-EFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVNFR 83
           +L+ +  G  +    +K FI   K R      + L VGPPG GKT++ + +A  L   F 
Sbjct: 571 SLDRDHYGLDDIKEMIKTFIAVGKLRGSVGGKIILLVGPPGTGKTSIGKSIATALDRQFY 630

Query: 84  STSGPVIAKAGDLA------------ALLTNLE----DRDVLFIDEIHRLSI-------- 119
             S   I+   ++              ++  L+       V+ IDEI ++S         
Sbjct: 631 RFSVGGISDVAEIKGHRRTFVGAMPGKIIQALKTVKTSNPVILIDEIDKISKGSHSDPFA 690

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            + E+L P      LD           +  +LS+   I        +  PL DR  +   
Sbjct: 691 ALLEVLDPQQNKNFLD-------HYMDIPYDLSKVLFICTANLTHPIPAPLLDRMDVMRL 743

Query: 180 LNFYEIEDLK 189
             + + E ++
Sbjct: 744 NGYIQAEQIE 753


>gi|169831648|ref|YP_001717630.1| AAA family ATPase [Candidatus Desulforudis audaxviator MP104C]
 gi|169638492|gb|ACA59998.1| AAA family ATPase, CDC48 subfamily [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 753

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 46/197 (23%), Positives = 77/197 (39%), Gaps = 23/197 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEA--------AKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           T E+  G  +    ++  IE         A+   EA   VL  GPPG GKT +A+ VA E
Sbjct: 198 TYEDIGGLQKGIQRIREMIELPLKYPEIFARLGIEAPKGVLLHGPPGTGKTLIARAVANE 257

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM 129
              +F   +GP I          +L  +          ++F+DEI  ++   E ++   +
Sbjct: 258 TDAHFFHVNGPEIIHKFYGESEANLRGIFEEAGKNAPSIIFLDEIDAIAPKRESVVGE-V 316

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
           E   +  ++G      S      +  +I AT     L   L+   RF   I +N  + + 
Sbjct: 317 EKRVVAQLLGLMDGLESR----GQVIVIGATNIPNSLDPALRRPGRFDREITVNIPDKKS 372

Query: 188 LKTIVQRGAKLTGLAVT 204
              I+Q   +   L+  
Sbjct: 373 RLEILQIHTRGMPLSKD 389



 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/187 (22%), Positives = 67/187 (35%), Gaps = 23/187 (12%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARA--------EALDHVLFVGPPGLGKTTLAQVVARE 77
              +  G  +    LK  +E                   +L  G PG GKT +A+ VA E
Sbjct: 471 RWSDIGGLDKVKQELKEAVEWPIKHPGLFTYVKTNPPKGILLHGSPGTGKTLIAKAVANE 530

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
            GVNF S  GP +           +  +    +     ++F DEI  L  +       A 
Sbjct: 531 SGVNFISVKGPALLSKWVGESEKGVREVFKKAKQAAPCIVFFDEIDALVPVRGTGGGDAH 590

Query: 130 -EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
             +  L  ++ E          L    ++AAT R+ L+   L    RF + + L     +
Sbjct: 591 VAERVLSQLLTE----MDGVEELKGVVVLAATNRLELIDPALLRPGRFDLLLELPVPGED 646

Query: 187 DLKTIVQ 193
           +   I+Q
Sbjct: 647 ERLAILQ 653


>gi|15614852|ref|NP_243155.1| stage V sporulation protein K [Bacillus halodurans C-125]
 gi|10174909|dbj|BAB06008.1| stage V sporulation protein K [Bacillus halodurans C-125]
          Length = 775

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 53/258 (20%), Positives = 85/258 (32%), Gaps = 33/258 (12%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALD----------HVLFVGPPGLGKTTLAQVVA 75
            LE+  G  +    LK     AK +    D          H +F G PG GKTT+A++ A
Sbjct: 514 RLEQLIGLADVKRELKQLTSFAKVQQMRRDKGMTTIPIQLHSIFSGNPGTGKTTVAKLFA 573

Query: 76  RE--------LGVNFRSTSGPVIAKAGDLAALLTNLEDRD----VLFIDEIHRLSIIVEE 123
                      G     +   ++A      AL T    RD    VLFIDE + L    ++
Sbjct: 574 EALQEIGLLKRGHVSIVSRSDLVAGFVGQTALKTKERIRDALGGVLFIDEAYSLFKGGQD 633

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
                  D  +D M  +G +   +     +      T   G     L+ RF        Y
Sbjct: 634 -FGKEAVDTLVDEMTKQGENLVVIMAGYPKEMEELLTANPG-----LKSRFKKVFTFADY 687

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACE-----IAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
              +L+ ++   ++  G  + +EA  +              R A  LL R      +   
Sbjct: 688 TKAELQAMIDYHSEQYGYHLDEEARRQVGQLLPESGHPSNGRFAVDLLERAIQRQAIRIT 747

Query: 239 KTITREIADAALLRLAID 256
           +       +  +     D
Sbjct: 748 EIEEDISEEQLMTLTGRD 765


>gi|307292717|ref|ZP_07572563.1| DNA polymerase III, subunits gamma and tau [Sphingobium
           chlorophenolicum L-1]
 gi|306880783|gb|EFN11999.1| DNA polymerase III, subunits gamma and tau [Sphingobium
           chlorophenolicum L-1]
          Length = 538

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 57/308 (18%), Positives = 98/308 (31%), Gaps = 31/308 (10%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           +S +           RPR   E  GQ      L   I     R       L  G  G+GK
Sbjct: 1   MSDSHQPYRVLARKYRPRNFRELIGQDAMVQTLANAIR----RGRLAHAFLMTGVRGVGK 56

Query: 68  TTLAQVVARELGV-NFRSTSGPVIAKAGDLAALLTNLEDR--DVLFID-----EIHRLSI 119
           T+ A+++A+ L         GP I   G     +   E R  DV+ +D      +  +  
Sbjct: 57  TSTARLIAKALNCVGPDGQGGPTIDPCGACEPCMAIAEGRHIDVVEMDAASHTGVDDVRE 116

Query: 120 IVEEILYPAMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           I+E + Y A+       ++ E             ++++   +    + ATT V  +   +
Sbjct: 117 IIEAVRYAAVSARYKIYIIDEVHMLSKNAFNALLKTLEEPPAHVKFLFATTEVNKVPVTV 176

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
             R      L     E L        +   +A   +A   IA  + G+ R    +L +  
Sbjct: 177 LSRCQ-RFDLRRIPAELLAAHFAHVVEAEAVAAEPDALALIAQAAEGSARDGLSILDQAI 235

Query: 231 DFAEVAHAKTITREIADAALLRLAIDKMGFDQL--DLRYLTMIARNFGGGPVGIETISAG 288
             AE+     +              D +G        R L ++     G  +G       
Sbjct: 236 AHAEMGEGAPLVTATQV-------RDMLGLSDRGATRRLLGLLLEGDTGALLGAVRDQYA 288

Query: 289 LSEPRDAI 296
           L     ++
Sbjct: 289 LGVEPLSL 296


>gi|282853315|ref|ZP_06262652.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes J139]
 gi|282582768|gb|EFB88148.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes J139]
 gi|314982855|gb|EFT26947.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL110PA3]
 gi|315091173|gb|EFT63149.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL110PA4]
          Length = 717

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 65/278 (23%), Positives = 97/278 (34%), Gaps = 30/278 (10%)

Query: 24  PR-TLEEFTGQVEACSNLKVFIE-----AAKARAEA--LDHVLFVGPPGLGKTTLAQVVA 75
           P+ T  +  G  EA   L+   E     A   R  A     VL  GPPG GKT LA+ VA
Sbjct: 162 PKSTFADVAGCQEAIDELQEIREFLAEPAKFQRVGAKIPKGVLLYGPPGTGKTLLARAVA 221

Query: 76  RELGVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
            E GV F S SG            ++  DL           ++FIDEI  +       + 
Sbjct: 222 GEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKEAAP-AIIFIDEIDAVGRHRGAGMG 280

Query: 127 PAMEDFQLD----LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRL 180
              ++ +      L+  +G   R   I       IAAT R  +L   L    RF   I +
Sbjct: 281 GGHDEREQTLNQLLVEMDGFDVRGGVIL------IAATNRPDVLDPALLRPGRFDRQIAV 334

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
              +++    I++  A    +A   + A         T      +L         A+   
Sbjct: 335 EAPDLDGRLKILKVHAHGKPMADDVDLASIARRTPGMTGADLANVLNEAALLTARANLPV 394

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
           I     D A+ R+        +L   +  ++     GG
Sbjct: 395 IGNAELDEAIDRVIAGPQKKTRLMNEHERLVTAYHEGG 432


>gi|224128696|ref|XP_002320396.1| predicted protein [Populus trichocarpa]
 gi|222861169|gb|EEE98711.1| predicted protein [Populus trichocarpa]
          Length = 684

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 58/274 (21%), Positives = 95/274 (34%), Gaps = 23/274 (8%)

Query: 26  TLEEFTG-----QV--EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G     Q   E    LK         A     VL VGPPG GKT LA+ +A E 
Sbjct: 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEA 288

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG           A  +  L    ++    ++F+DEI  +       +    +
Sbjct: 289 GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGND 348

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E               +IAAT R  +L + L    RF   + ++  +I 
Sbjct: 349 EREQTLNQLLTEMDGFEGNTG----VIVIAATNRADILDSALLRPGRFDRQVTVDVPDIR 404

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
               I++  A                     +      LL      A       I+ +  
Sbjct: 405 GRTEILKVHAGNKKFDADVSLDVISMRTPGFSGADLANLLNEAAILAGRRGKTAISSKEI 464

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV 280
           D ++ R+     G    D +  +++A +  G  V
Sbjct: 465 DDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAV 498


>gi|153001132|ref|YP_001366813.1| DNA polymerase III subunits gamma and tau [Shewanella baltica
           OS185]
 gi|151365750|gb|ABS08750.1| DNA polymerase III, subunits gamma and tau [Shewanella baltica
           OS185]
          Length = 1137

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 49/241 (20%), Positives = 75/241 (31%), Gaps = 55/241 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQV-------- 73
           RP T ++  GQ      L   +       + L H  LF G  G+GKT+LA++        
Sbjct: 38  RPATFDQMVGQSHVLHALTNALS-----QQRLHHAYLFTGTRGVGKTSLARLFAKGLNCE 92

Query: 74  ----------------VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRD------VLFI 111
                           +A+   V+          K  D   LL N++ R       V  I
Sbjct: 93  QGVTATPCGVCGSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPTRGRFKVYLI 152

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 153 DEVHMLSRSSFNALLKTLEE------------------PPEHVKFLLATTDPQKLPVTVL 194

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L      ++ T +             EA   +A  + G+ R A  L  +   
Sbjct: 195 SRC-LQFNLKSLTQSEIGTQLNHILTQEQFPFEAEALKLLAKAANGSMRDALSLTDQAIA 253

Query: 232 F 232
           F
Sbjct: 254 F 254


>gi|149072041|ref|YP_001293616.1| cell division protein [Rhodomonas salina]
 gi|134302992|gb|ABO70796.1| cell division protein [Rhodomonas salina]
          Length = 628

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 63/274 (22%), Positives = 98/274 (35%), Gaps = 23/274 (8%)

Query: 26  TLEEFTGQVEACSN-------LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T E+  G  EA          LK         A+    VL VGPPG GKT LA+ +A E 
Sbjct: 171 TFEDVAGVDEAKEEFEEVVSFLKRPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGES 230

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG           A  +  L    ++    ++FIDEI  +       +    +
Sbjct: 231 GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENSPCIVFIDEIDAVGRQRGTGIGGGND 290

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E               +IAAT RV +L   L    RF   + +N  ++ 
Sbjct: 291 EREQTLNQLLTEMDGFEGNTG----IIIIAATNRVDVLDAALLRPGRFDRQVTVNVPDVR 346

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
               I+   A+   L+               +      LL            K +T    
Sbjct: 347 GRLEILNVHARNKKLSEEISLEVIARRTPGFSGADLANLLNEAAILTARRRKKAVTMSEV 406

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV 280
           DA++ R+     G   +D +   +IA +  G  +
Sbjct: 407 DASIDRVIAGMEGTALVDSKTKRLIAYHEVGHAI 440


>gi|148706233|gb|EDL38180.1| protease, serine, 15, isoform CRA_b [Mus musculus]
          Length = 978

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 61/326 (18%), Positives = 119/326 (36%), Gaps = 65/326 (19%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI  ++ R      +L F GPPG+GKT++A+ +AR LG  +   S
Sbjct: 507 EDHYGMEDVKKRVLEFIAVSQLRGSTQGKILCFHGPPGVGKTSIARSIARALGREYFRFS 566

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ ++    +        
Sbjct: 567 VGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLVLIDEVDKIGRGYQGDPSSALL 626

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V ++LS+   I     +  +  PL+DR  + I ++ 
Sbjct: 627 ELLDPEQNANFLD-------HYLDVPVDLSKVLFICTANVIDTIPEPLRDRMEM-INVSG 678

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  ++   I +R   L   A T     E   +       A  L   ++ +   +  + + 
Sbjct: 679 YVAQEKLAIAERY--LVPQARTLCGLDESKAQLS-----AAVLTLLIKQYCRESGVRNL- 730

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
           ++  +  L + A   +  +   ++      ++F G PV               +E + E 
Sbjct: 731 QKQVEKVLRKAAYKIVSGEAQTVQVTPENLQDFVGKPVF-------------TVERMYE- 776

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLG 328
                     TP G ++M +AW  +G
Sbjct: 777 ---------VTPPG-VVMGLAWTAMG 792


>gi|126460414|ref|YP_001056692.1| AAA family ATPase, CDC48 subfamily protein [Pyrobaculum
           calidifontis JCM 11548]
 gi|126250135|gb|ABO09226.1| AAA family ATPase, CDC48 subfamily [Pyrobaculum calidifontis JCM
           11548]
          Length = 736

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 62/274 (22%), Positives = 99/274 (36%), Gaps = 33/274 (12%)

Query: 28  EEFTGQVEACSNLKVFIE-AAKARA-------EALDHVLFVGPPGLGKTTLAQVVARELG 79
           ++  G       L+  +E   K R        E    +L  GPPG+GKT  A+ VA E G
Sbjct: 465 DDIGGYDSIKQELREIVEWPMKYRHYFDELGVEPPKGILLFGPPGVGKTLFAKAVATESG 524

Query: 80  VNFRSTSGPVI--AKAGDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAMED 131
            NF +  GP +     G+    +  +  +       V+F DEI  ++      L      
Sbjct: 525 ANFIAVRGPELLSKWVGESEKAVREVFKKARMAAPCVIFFDEIDSIAPARGTRLGD---S 581

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
              D +V +  +       L    ++AAT R  +L   L    RF   I +   + +   
Sbjct: 582 GVTDRIVNQLLAEMDGIGTLKNVVVMAATNRPDILDPALLRPGRFDRVIYVPPPDFKARV 641

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR------VRDFAEVAHAKTITR 243
            I +   K   LA  D    E+A R+ G        L R      +R+       K ++ 
Sbjct: 642 EIFKVHTKKIKLA-DDVNIEELAKRTEGYTGADIAALVREAAMLALREVIREGKVKPVSM 700

Query: 244 EIADAALLR-----LAIDKMGFDQLDLRYLTMIA 272
              + AL R        D   ++++  R    IA
Sbjct: 701 RHFEEALKRVPPSLTPEDIRRYEEMAKRVRRTIA 734



 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 49/117 (41%), Gaps = 17/117 (14%)

Query: 24  PR-TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVV 74
           P+ T E+     +A   ++  +E      E   H        +L +GPPG GKT LA+ V
Sbjct: 172 PKVTWEDIGDLEDAKQKIRELVELPLRHPELFKHLGIEPPKGILLIGPPGTGKTLLAKAV 231

Query: 75  ARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEE 123
           A E    F + +GP I           L  +    +     ++FIDEI  ++   EE
Sbjct: 232 ANEANAYFVAINGPEIMSKYYGESEARLREIFEEAKKNAPAIIFIDEIDAIAPKREE 288


>gi|145545135|ref|XP_001458252.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124426071|emb|CAK90855.1| unnamed protein product [Paramecium tetraurelia]
          Length = 359

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/182 (22%), Positives = 72/182 (39%), Gaps = 18/182 (9%)

Query: 27  LEEFTGQVEACSNLKVFIEAAKARAE-------ALDHVLFVGPPGLGKTTLAQVVARELG 79
            E+  G     + L+  I     R +           +LF GPPG GKT LA+ VA ++ 
Sbjct: 92  FEDIIGLEHIKNQLEETIILPNLRPDIYTGIRAPPKGILFYGPPGNGKTLLAKAVANQIK 151

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAMED 131
             F + S   +           + AL          V+F+DEI  +     +  + A   
Sbjct: 152 CCFFNISASTLVQKHLGEGEKLMRALFDVAFQLQPSVIFVDEIDSILSKRSQNEHEASRR 211

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
            + + ++       S   +  R  LIAAT R   + + +  RF + I ++  E++    +
Sbjct: 212 LKTEFLISFDGIQSS---DQDRVFLIAATNRPQDIDDAVLRRFTVKILIDQPELKVRVEM 268

Query: 192 VQ 193
           V+
Sbjct: 269 VK 270


>gi|28572868|ref|NP_789648.1| DNA polymerase III subunits gamma and tau [Tropheryma whipplei
           TW08/27]
 gi|28411001|emb|CAD67386.1| DNA polymerase III subunit gamma/tau [Tropheryma whipplei TW08/27]
          Length = 522

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 66/307 (21%), Positives = 103/307 (33%), Gaps = 42/307 (13%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQ 72
            E A     RP    E  GQ      L   ++        L H  LF GP G GKTT A+
Sbjct: 4   SEQALYRRYRPEVFSEMVGQDGVTGLLSSALD-----NNRLGHAYLFSGPRGCGKTTSAR 58

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALL----TNLEDRDVLFIDEIHRLSIIVEEILY-- 126
           V AR L       +GP  +  G   + +    +     DV+ ID      +     L   
Sbjct: 59  VFARCLNC----VNGPTSSPCGKCQSCIDLGRSGNGSLDVIEIDAASHNGVDDARALRER 114

Query: 127 ----PAMEDFQLDL------MVGEGPSA--RSVKINLSRFTLIAATTRVGLLTNPLQDRF 174
               PA   F++ +      +  +G +A  + V+   +    I ATT    +   ++ R 
Sbjct: 115 AIFAPAQSRFRIFILDEAHMVTTQGFNALLKIVEEPPAHVKFIFATTEPEKVLGTIRSR- 173

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
                        ++  +        + V D     +     G+ R    +L ++     
Sbjct: 174 TFSYPFALVSASIMQPYIADICNKEKIRVEDGVLPLVVRAGGGSVRDTLSILDQLM---- 229

Query: 235 VAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGG-GPVGIETISAGLSEPR 293
                      +   LLRLA D + +D         IA + G      IE +     EP 
Sbjct: 230 ---VGKCITYESTVGLLRLAPDILLYD-----LFLAIAEDDGATAFASIEKVVEAGYEPV 281

Query: 294 DAIEDLI 300
             IEDL+
Sbjct: 282 QFIEDLM 288


>gi|332305802|ref|YP_004433653.1| DNA polymerase III, subunits gamma and tau [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332173131|gb|AEE22385.1| DNA polymerase III, subunits gamma and tau [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 893

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/174 (21%), Positives = 57/174 (32%), Gaps = 40/174 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP    E  GQ    + +   ++      + L H  LF G  G+GKTT+A++ ++ L   
Sbjct: 11  RPNNFSELVGQEHVVAAISNALD-----NDRLHHAYLFTGTRGVGKTTIARIFSKSLNCE 65

Query: 82  FRSTS------------------------GPVIAKAGDLAALLTNLEDRD------VLFI 111
               S                             K  D   LL N++ R       +  I
Sbjct: 66  LGMGSKPCGQCSTCVEIEQGNFVDLLEIDAASRTKVEDTRELLDNVQYRPTRGRYKIYLI 125

Query: 112 DEIHRLSIIVEEILYPAMED---FQLDLMVGEGPSARSVKINLSRFTLIAATTR 162
           DE+H LS      L   +E+       L+    P    + I LSR         
Sbjct: 126 DEVHMLSKHSFNALLKTLEEPPPHVKFLLATTDPQKLPITI-LSRCLQFNLKAL 178


>gi|261328426|emb|CBH11403.1| peroxisome assembly protein, putative [Trypanosoma brucei gambiense
           DAL972]
          Length = 981

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 58/239 (24%), Positives = 85/239 (35%), Gaps = 25/239 (10%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH---------VLFVGPPGLGKTTL 70
           + L+P    +  G  +A   L+  I+      E L +         +LF GPPG GKT L
Sbjct: 674 TKLQPVRWSDVGGLEDAKRELREMIQLPLLYPELLGNGGNAKHGAGILFYGPPGCGKTLL 733

Query: 71  AQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIV- 121
           A+ VA E+ +NF +  GP +          ++  L     D    ++F DE+  L+    
Sbjct: 734 AKAVATEMNMNFMAVKGPELINQYVGESEKNIRLLFQRARDNSPCIIFFDELDALAPARG 793

Query: 122 -EEILYPAMEDFQLDLMVGEG--PSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGI 176
            +     AM+     L+V       +RS      +  +IAAT R  LL   L    RF  
Sbjct: 794 AKGDAGGAMDRVVAQLLVEVDGVGHSRSDGTAAGKVFIIAATNRPDLLDPALLRPGRFDK 853

Query: 177 PIRLNFYEIEDLKTIVQRGA--KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
              L        + +  R    K       D  A    M    T      L      FA
Sbjct: 854 LCYLGIPSTRSEQLVALRALTRKFDLAEDVDLEALLQPMTLDYTGADLFALCSDAMMFA 912


>gi|302895269|ref|XP_003046515.1| hypothetical protein NECHADRAFT_66291 [Nectria haematococca mpVI
           77-13-4]
 gi|256727442|gb|EEU40802.1| hypothetical protein NECHADRAFT_66291 [Nectria haematococca mpVI
           77-13-4]
          Length = 1120

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 86/249 (34%), Gaps = 36/249 (14%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI   K R      +L FVGPPG+GKT++ + +AR L   +   S
Sbjct: 572 EDHHGLKDVKDRILEFIAVGKLRGTVEGKILCFVGPPGVGKTSIGKSIARALNREYYRFS 631

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDEI ++    +        
Sbjct: 632 VGGLTDVAEIKGHRRTYVGALPGRMIQALKKCQTENPLILIDEIDKIGRGYQGDPSSALL 691

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V ++LS+   +        +  PL DR  I I L+ 
Sbjct: 692 ELLDPEQNSSFLD-------HYMDVPVDLSKVLFVCTANMTDTIPRPLLDRMEI-ITLSG 743

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  ++   I QR       A  + A  + A        I   +    R+       K I 
Sbjct: 744 YVADEKMAIAQR---YLAPAAKETAGLQNADVILSEEAIEELIKSYCRESGVRNLKKQIE 800

Query: 243 REIADAALL 251
           +    +AL 
Sbjct: 801 KVYRKSALK 809


>gi|302794532|ref|XP_002979030.1| hypothetical protein SELMODRAFT_152929 [Selaginella moellendorffii]
 gi|300153348|gb|EFJ19987.1| hypothetical protein SELMODRAFT_152929 [Selaginella moellendorffii]
          Length = 595

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 56/274 (20%), Positives = 95/274 (34%), Gaps = 23/274 (8%)

Query: 26  TLEEFTG-----QV--EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G     Q   E    LK         A+    VL VGPPG GKT LA+ +A E 
Sbjct: 131 TFNDVAGVDEAKQDFMEVVEFLKRPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA 190

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG           A  +  L    ++    ++F+DEI  +       +    +
Sbjct: 191 GVPFFSISGSEFVEVFVGIGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGND 250

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E               ++AAT R  +L   L    RF   + ++  +++
Sbjct: 251 EREQTLNQLLTEMDGFEGNTG----VIVVAATNRADILDAALLRPGRFDRQVSVDVPDVK 306

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
               I++  A                     +      LL      A       I+ +  
Sbjct: 307 GRTEILRVHAGNKKFDGDVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKTAISAKEI 366

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV 280
           D ++ R+     G    D +  +++A +  G  V
Sbjct: 367 DDSIDRIVAGMEGTTMTDGKTKSLVAYHEVGHAV 400


>gi|170077524|ref|YP_001734162.1| cell division protein ftsH like protein (ATP-dependent zinc
           metallopeptidase) [Synechococcus sp. PCC 7002]
 gi|169885193|gb|ACA98906.1| Cell division protein ftsH like protein (ATP-dependent zinc
           metallopeptidase) [Synechococcus sp. PCC 7002]
          Length = 625

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 60/260 (23%), Positives = 96/260 (36%), Gaps = 22/260 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  EA + L   +E  K         A+    VL VGPPG GKT +A+ VA E 
Sbjct: 168 TFDDVAGVEEAKTELTEIVEFLKTPQRYTAIGAKIPKGVLLVGPPGTGKTLMAKAVAGEA 227

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG         A A  +  L    + +   ++FIDE+  +             
Sbjct: 228 GVPFFSISGSEFVELFVGAGAARVRDLFEQAKKKAPCIIFIDELDAIGKSRASGGMMGGN 287

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
           D +   +              +   ++AAT R   L   L    RF   + ++  ++   
Sbjct: 288 DEREQTLNQLLTEMDGFSAGDATVIVLAATNRPETLDPALLRPGRFDRQVLVDRPDLGGR 347

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             I++  A    L   +    EIA R   TP  AG  L  + + A +  A+    ++  A
Sbjct: 348 LKILEIYANKVQLD-NEVNLKEIATR---TPGFAGADLANLVNEAALLAARNKRDKVTQA 403

Query: 249 AL-LRLAIDKMGFDQLDLRY 267
                +     G ++     
Sbjct: 404 DFSEAIERVVAGLEKKSRVL 423


>gi|310795633|gb|EFQ31094.1| replication factor C [Glomerella graminicola M1.001]
          Length = 393

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 47/321 (14%), Positives = 99/321 (30%), Gaps = 44/321 (13%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
                   +   RP +L + +G  +    +  F+++ +     L H+L  GPPG GKT+ 
Sbjct: 37  EAEDSLPWVEKYRPVSLADVSGHQDILVTINKFVDSNR-----LPHLLLYGPPGTGKTST 91

Query: 71  AQVVAR------ELGVNFRSTSGPVIAKAGDLAALLTN---------------------- 102
              +AR       +       +         +   +                        
Sbjct: 92  ILALARRIYGAENMRQMVLELNASDDRGIDVVREQIKTFASTKQIFTLGPSAKSGGGGGG 151

Query: 103 LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD--LMVGEGPSARSVKINLSRFTLIAAT 160
           +    ++ +DE   ++   +  L   ME + ++    +    S +     LSR T    +
Sbjct: 152 MASYKLIILDEADAMTNTAQMALRRIMEKYTVNTRFCIIANYSHKLSPALLSRCTRFRFS 211

Query: 161 TRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLA---VTDEAACEIAMRSRG 217
                    L D+      +     E  + +V+        A   +    A    ++ + 
Sbjct: 212 PLKERDIRVLVDKVIEEEHVKIM-PEATEALVKLSKGDMRRALNVLQACHASSTPLQPKN 270

Query: 218 TPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDL-RYLTMIARNFG 276
            P++A   +  VR+                 A+  + +D +     D+   LT I     
Sbjct: 271 APKVAEGDI--VREMISTETIYNCIAAPQPDAIQEI-LDVL-LSTTDVTSCLTTINTLKV 326

Query: 277 GGPVGIETISAGLSEPRDAIE 297
              + +  I   L+E    +E
Sbjct: 327 ARGLALADIITALAEQLATLE 347


>gi|182418145|ref|ZP_02949445.1| putative Cell division protease FtsH [Clostridium butyricum 5521]
 gi|237666212|ref|ZP_04526199.1| cell division protease FtsH family protein [Clostridium butyricum
           E4 str. BoNT E BL5262]
 gi|182377963|gb|EDT75503.1| putative Cell division protease FtsH [Clostridium butyricum 5521]
 gi|237658302|gb|EEP55855.1| cell division protease FtsH family protein [Clostridium butyricum
           E4 str. BoNT E BL5262]
          Length = 703

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 71/297 (23%), Positives = 115/297 (38%), Gaps = 25/297 (8%)

Query: 26  TLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ EA  +LK  I       +  +  A+    VL VGPPG GKT +A+ VA E 
Sbjct: 169 TFDDVAGQEEAKESLKEVIDFLNCPAKYTEIGAKLPKGVLLVGPPGTGKTLIAKAVAGEA 228

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  L  +   +   ++FIDEI  +    +  +    E
Sbjct: 229 KVPFFSLSGSSFVEMFVGVGASRVRELFKDAVAKAPCIVFIDEIDAIGKSRDNQMQSNDE 288

Query: 131 -DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            +  L+ ++ E     S K       L+ AT R  +L   L    RF   + ++  E + 
Sbjct: 289 REQTLNQLLSEMDGFDSSKG----VVLLGATNRPEVLDKALLRPGRFDRRVIVDRPEFKG 344

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            + I++  AK   +   D    EIA  + G   +   L   + + A  A  +     + +
Sbjct: 345 REAILKVHAKNI-ILGDDVDLEEIARSTAG--AVGADLANVINEAALRAVRRRRKVVLQE 401

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
                + +   G ++ D               VG   +SA L   +   +  I P M
Sbjct: 402 DLREAVEVIIAGKEKKDAILSEKEREIVSYHEVGHALVSAMLKNTKPVHKITIVPRM 458


>gi|85057689|ref|YP_456605.1| ATP-dependent Zn protease [Aster yellows witches'-broom phytoplasma
           AYWB]
 gi|84789794|gb|ABC65526.1| ATP-dependent Zn protease [Aster yellows witches'-broom phytoplasma
           AYWB]
          Length = 701

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 47/250 (18%), Positives = 93/250 (37%), Gaps = 25/250 (10%)

Query: 27  LEEFTGQVEACSNLKVFIEAAKARAEALDHV----------LFVGPPGLGKTTLAQVVAR 76
             +  G  +    L+  IE    + +  D V          L  GPPG GK+ L + +  
Sbjct: 269 FSDIYGLKQEKEELEDLIE--YFQDDDFDMVNFDKVIPRGYLLYGPPGTGKSFLIEALCN 326

Query: 77  ELGVNFRSTSGPVIAKA------GDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPA 128
           ELG ++         K        +L  +    E   + ++FIDEI  L+   +      
Sbjct: 327 ELGTHYIVLEPSRFEKTYVGEGNEELEKIWQEAESHKKTIIFIDEISGLANREDNQSNKT 386

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
             +   +L+       RS K    +  L+ AT  +  + + L+ RF   I+++  + +++
Sbjct: 387 SINIVNNLLTKLDGFKRSDK----KIVLMGATNHLDKIDSALRSRFSKEIKIDLLKDDEI 442

Query: 189 KTIVQRGAKLTGLAVTDE-AACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           +  +Q       +         EIA + +G       L  ++ + A +   K   +    
Sbjct: 443 EGFLQFLVTDYKIIYQTYIHLKEIANKCKGKTISTRDLREKIIESAFIKAKKYKRKNPKH 502

Query: 248 AALLRLAIDK 257
             +L   +D+
Sbjct: 503 EVILPSDLDE 512


>gi|13357662|ref|NP_077936.1| ATP-dependent zinc metallopeptidase - cell division protein
           [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|170761853|ref|YP_001752188.1| ATP-dependent zinc metallopeptidase - cell division protein
           [Ureaplasma parvum serovar 3 str. ATCC 27815]
 gi|183508714|ref|ZP_02958198.1| ATP-dependent zinc metallopeptidase - cell division protein
           [Ureaplasma parvum serovar 14 str. ATCC 33697]
 gi|186701860|ref|ZP_02971520.1| ATP-dependent zinc metallopeptidase - cell division protein
           [Ureaplasma parvum serovar 6 str. ATCC 27818]
 gi|310946770|sp|B1AI94|FTSH_UREP2 RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|11356749|pir||D82934 ATP-dependent zinc metallopeptidase, cell division protein UU105
           [imported] - Ureaplasma urealyticum
 gi|6899060|gb|AAF30511.1|AE002110_9 ATP-dependent zinc metallopeptidase - cell division protein
           [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|168827430|gb|ACA32692.1| ATP-dependent zinc metallopeptidase - cell division protein
           [Ureaplasma parvum serovar 3 str. ATCC 27815]
 gi|182675637|gb|EDT87542.1| ATP-dependent zinc metallopeptidase - cell division protein
           [Ureaplasma parvum serovar 14 str. ATCC 33697]
 gi|186701162|gb|EDU19444.1| ATP-dependent zinc metallopeptidase - cell division protein
           [Ureaplasma parvum serovar 6 str. ATCC 27818]
          Length = 721

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 60/266 (22%), Positives = 93/266 (34%), Gaps = 30/266 (11%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAK-------ARAEALDH 56
            + LL  N +      S +R     +  G  E    L   ++  K       A A     
Sbjct: 218 SDSLLGTNKANAKLTKSGVR---FSDVAGIAEVKEELIEIVDFLKEPKKYVAAGARIPKG 274

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA------KAGDLAALLTNLEDR--DV 108
           V+  GPPG GKT +A+ VA E  V F  T+G           A  +  L          +
Sbjct: 275 VMLYGPPGTGKTLIAKAVAGEANVPFFQTTGSSFEDTFVGVGARRVRELFEKARKSAPAI 334

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +FIDEI  ++         A++D  ++ ++ E     +     S   ++AAT R+  L +
Sbjct: 335 IFIDEIDSVAKKR-GNSLTAVQDQTINQLLSELDGFDTS----SGVIVMAATNRLDTLDD 389

Query: 169 PLQ-----DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAG 223
            +      DR       +  E E +  I  R   L+     ++ A   A  S        
Sbjct: 390 AILRPGRFDRQISVNLPDILEREQILRIHSRNKNLSAKVSLEDIARRTAGFSGAQLENVL 449

Query: 224 R--LLRRVRDFAEVAHAKTITREIAD 247
               L  VRD A   H   +   I  
Sbjct: 450 NEAALLSVRDKATSIHMNHLDEAIDR 475


>gi|281348020|gb|EFB23604.1| hypothetical protein PANDA_017625 [Ailuropoda melanoleuca]
          Length = 885

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 47/279 (16%), Positives = 102/279 (36%), Gaps = 41/279 (14%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI  ++ R      +L F GPPG+GKT++A+ +AR L   +   S
Sbjct: 415 EDHYGMEDVKKRILEFIAVSQLRGSTQGKILCFYGPPGVGKTSIARSIARALSREYFRFS 474

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ ++    +        
Sbjct: 475 VGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLILIDEVDKIGRGYQGDPSSALL 534

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V ++LS+   I        +  PL+DR  + I ++ 
Sbjct: 535 ELLDPEQNANFLD-------HYLDVPVDLSKVLFICTANVTETIPEPLRDRMEM-INVSG 586

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  ++   I +R      +            R++ +  +   L+++    + V + +   
Sbjct: 587 YVAQEKLAIAER----YLVPQARALCGLDESRAKLSSAVLTLLIKQYCRESGVRNLQKQV 642

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVG 281
            ++   +  ++   +    ++    L    ++F G PV 
Sbjct: 643 EKVLRKSAYKIVSGEADLVEVTPENL----QDFVGKPVF 677


>gi|323529454|ref|YP_004231606.1| AAA ATPase central domain-containing protein [Burkholderia sp.
           CCGE1001]
 gi|323386456|gb|ADX58546.1| AAA ATPase central domain protein [Burkholderia sp. CCGE1001]
          Length = 638

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 58/251 (23%), Positives = 96/251 (38%), Gaps = 26/251 (10%)

Query: 26  TLEEFTGQVEACSNL---KVFIEAAKA----RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
             ++  G  EA + L   + ++   K        A   +L VG PG+GKT LAQ +A E 
Sbjct: 188 RFDDVIGAGEAKAALADIRGYLSNPKQFTSMGVRAPCGILMVGGPGVGKTRLAQALAGEC 247

Query: 79  GVNFRSTSGP---------VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP-- 127
           G NF S +G           I K   L  +        V+FIDE   L+   +    P  
Sbjct: 248 GANFISITGSYFSAKYYGVGIQKVKHLFEMARKNAP-TVIFIDEADGLAKRTDTGGGPVE 306

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           A  +  ++ ++ E     S +       ++AAT     L   L+   RF   +++   + 
Sbjct: 307 AESNRIINQLLAEMDGFASNEG----VIIVAATNHPDNLDEALRRPGRFDRTVQVRLPDR 362

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRG-TPRIAGRLLRRVRDFAEVAHAKTITRE 244
           ED   I +  A+       D    ++A  + G +P     ++ +    A  A  K I  +
Sbjct: 363 EDRAKIFRFYAQKLKAKAADIDYDQLARLTTGLSPATVAMVVNQAGLVARKAGDKEIAAK 422

Query: 245 IADAALLRLAI 255
               A+    I
Sbjct: 423 HFIEAIKIARI 433


>gi|254421036|ref|ZP_05034760.1| DNA polymerase III, subunits gamma and tau, putative [Brevundimonas
           sp. BAL3]
 gi|196187213|gb|EDX82189.1| DNA polymerase III, subunits gamma and tau, putative [Brevundimonas
           sp. BAL3]
          Length = 623

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 49/240 (20%), Positives = 84/240 (35%), Gaps = 21/240 (8%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           + S         RPRT E+  GQ      L      A +        +  G  G+GKTT 
Sbjct: 68  DGSAYQVLARKYRPRTFEDLIGQEAMVRTL----TNAFSTGRIAHAFMLTGVRGVGKTTT 123

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLA--ALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           A+++AR L     S   P +         A +   +  DV+ +D      +     +  +
Sbjct: 124 ARLLARALNNETESIDRPSLTLTAHGRHDAAIMAGQHMDVMEMDAASHTGVNDIRDILES 183

Query: 129 ---------MEDFQLDLMVGEGPSA-----RSVKINLSRFTLIAATTRVGLLTNPLQDRF 174
                     + + LD +      A     ++++        I ATT +  +   +  R 
Sbjct: 184 VRYAPVEARYKVYVLDEVHMLSTQAFNALLKTLEEPPPHAKFIFATTEIRKVPVTILSRC 243

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
                L   E E L   + R A+  G+ +  +A   I+  + G+ R    LL +    AE
Sbjct: 244 Q-RFDLRRVEPEILIGHLGRIAEREGMKIEQDALALISRAAEGSVRDGLSLLDQALVQAE 302


>gi|48477528|ref|YP_023234.1| cell division cycle protein 48 [Picrophilus torridus DSM 9790]
 gi|48430176|gb|AAT43041.1| cell division cycle protein 48 [Picrophilus torridus DSM 9790]
          Length = 744

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 56/267 (20%), Positives = 98/267 (36%), Gaps = 23/267 (8%)

Query: 28  EEFTGQVEACSNLKVFIEA--------AKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           ++  G     S L+  +E          +    A    L  GPPG GKT LA+ VA E  
Sbjct: 466 DDIGGLENVKSELREAVELPLLNPDVFKRLGIRAPKGFLLYGPPGTGKTLLAKAVANESN 525

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAMED 131
            NF S  GP +           +  +    +     ++F+DEI  ++         +M+ 
Sbjct: 526 ANFISIKGPEVLSKWVGESEKAVREIFKKAKQVAPSIVFLDEIDSIAPRR----GASMDS 581

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
              + +V +  ++      L+   +IAAT R  ++   L    RF   + +   + E   
Sbjct: 582 GVTERIVNQLLTSLDGIEVLNGVVVIAATNRPDIIDPALLRAGRFDKIMYIPPPDEEGRY 641

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            I+Q   K   LA  D    E+A ++ G        L R             T    +  
Sbjct: 642 KILQVHTKNMPLA-PDVDLRELAKKTDGFVGADIENLCREAGMMAYRSNPDATEVTQNDF 700

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFG 276
           L  L   +   D+  +++   +A++ G
Sbjct: 701 LNALKTIRPSVDESVIKFYNDLAKSMG 727



 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/197 (23%), Positives = 77/197 (39%), Gaps = 23/197 (11%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARELG 79
           E+  G  +    ++  IE      E            VL  GPPG GKT +A+ VA E G
Sbjct: 189 EDIGGLSDQLGRIREIIELPLKHPELFERLGITPPKGVLLSGPPGTGKTLIAKAVANESG 248

Query: 80  VNFRSTSGPVIAKA------GDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAMED 131
            NF + +GP I           L  +    E+    ++FIDEI  ++   E+     ++ 
Sbjct: 249 ANFYAINGPEIMSKYYGQSEQKLREIFQKAEESEPSIIFIDEIDSIAPKRED-----VQG 303

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
                +V +  +            +I AT R+  +   L+   RF   I +   + +  K
Sbjct: 304 EVERRVVAQLLTLMDGLKERGHVIVIGATNRIDAVDPALRRPGRFDREITIGVPDKKGRK 363

Query: 190 TIVQRGAKLTGLAVTDE 206
            I+    +   L +TD+
Sbjct: 364 EILAIHTRGMPLGMTDD 380


>gi|15920767|ref|NP_376436.1| hypothetical protein ST0548 [Sulfolobus tokodaii str. 7]
 gi|15621550|dbj|BAB65545.1| 605aa long hypothetical SAV protein [Sulfolobus tokodaii str. 7]
          Length = 605

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 49/272 (18%), Positives = 92/272 (33%), Gaps = 31/272 (11%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAA--------KARAEAL 54
           D E         E  D   +   TL +  G  E    L   +E          + +  ++
Sbjct: 323 DYERKFRGPELPESEDAEKI---TLNDIGGYEEIKKELYDLLEMQFKYYNLMEQMKIPSI 379

Query: 55  DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD- 107
             +L  GPPG+GKT +A+ +AR LGV     SG  I           +  +     +   
Sbjct: 380 RGILLYGPPGVGKTMMAKALARTLGVRLIMLSGAEILYKGYEGAVSAVKEVFNRARENKP 439

Query: 108 -VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
            +L +DE+  ++   E     A +      +V +  +      +L    +I  T R+  +
Sbjct: 440 SILLLDELDAIAPKRENQKSEASK------IVNQLLTEMDGIRSLKEVVVIGTTNRLEDI 493

Query: 167 TNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAG- 223
              L+   RF   I +     ++ K I ++          +               IA  
Sbjct: 494 DPALKRPGRFDRIIYMPLPNKDERKDIFEKYLGKDICEQVNCDKLADITEGYSGADIAAV 553

Query: 224 ---RLLRRVRDFAEVAHAKTITREIADAALLR 252
                L+ +++       + +T E    A+ +
Sbjct: 554 TREAKLKVLKEIIRGNKERKLTYEDLLEAIAK 585



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 77/229 (33%), Gaps = 22/229 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIE--------AAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           T +   G  +    +K +IE        A K        +L  GPPG GK+ + + +A E
Sbjct: 59  TWDMIGGYDDVKKEIKEYIEIPLKYKEIAKKYGLRPPKGILLFGPPGCGKSLMMRALANE 118

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
             +NF   +   I           L  L  N       +LF DEI  + +  E     ++
Sbjct: 119 AKINFIYVNVSDIMSKWYGESEARLRELFANARKNAPCILFFDEIDTIGVKRESHTGDSV 178

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
               L LM+ E    +S         ++ +T    LL   L    RF   I +   + + 
Sbjct: 179 TPRLLSLMLSEIDGLQSEDG----VIIVGSTNVPHLLDKALLRAGRFDKLIYIGVPDKKS 234

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
            K I     K   L    +      M  R T      + + V   A V 
Sbjct: 235 RKEIFLIHCKNMPLGEDVDFDKLAEMTERFTGADIANVCQEVARMAAVE 283


>gi|314922407|gb|EFS86238.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL001PA1]
          Length = 717

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 65/278 (23%), Positives = 97/278 (34%), Gaps = 30/278 (10%)

Query: 24  PR-TLEEFTGQVEACSNLKVFIE-----AAKARAEA--LDHVLFVGPPGLGKTTLAQVVA 75
           P+ T  +  G  EA   L+   E     A   R  A     VL  GPPG GKT LA+ VA
Sbjct: 162 PKSTFADVAGCQEAIDELQEIREFLAEPAKFQRVGAKIPKGVLLYGPPGTGKTLLARAVA 221

Query: 76  RELGVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
            E GV F S SG            ++  DL           ++FIDEI  +       + 
Sbjct: 222 GEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKEAAP-AIIFIDEIDAVGRHRGAGMG 280

Query: 127 PAMEDFQLD----LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRL 180
              ++ +      L+  +G   R   I       IAAT R  +L   L    RF   I +
Sbjct: 281 GGHDEREQTLNQLLVEMDGFDVRGGVIL------IAATNRPDVLDPALLRPGRFDRQIAV 334

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
              +++    I++  A    +A   + A         T      +L         A+   
Sbjct: 335 EAPDLDGRLKILKVHAHGKPMADDVDLASIARRTPGMTGADLANVLNEAALLTARANLPV 394

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
           I     D A+ R+        +L   +  ++     GG
Sbjct: 395 IGNAELDEAIDRVIAGPQKKTRLMNEHERLVTAYHEGG 432


>gi|301784761|ref|XP_002927796.1| PREDICTED: lon protease homolog, mitochondrial-like [Ailuropoda
           melanoleuca]
          Length = 910

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 47/279 (16%), Positives = 102/279 (36%), Gaps = 41/279 (14%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI  ++ R      +L F GPPG+GKT++A+ +AR L   +   S
Sbjct: 440 EDHYGMEDVKKRILEFIAVSQLRGSTQGKILCFYGPPGVGKTSIARSIARALSREYFRFS 499

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ ++    +        
Sbjct: 500 VGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLILIDEVDKIGRGYQGDPSSALL 559

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V ++LS+   I        +  PL+DR  + I ++ 
Sbjct: 560 ELLDPEQNANFLD-------HYLDVPVDLSKVLFICTANVTETIPEPLRDRMEM-INVSG 611

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  ++   I +R      +            R++ +  +   L+++    + V + +   
Sbjct: 612 YVAQEKLAIAER----YLVPQARALCGLDESRAKLSSAVLTLLIKQYCRESGVRNLQKQV 667

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVG 281
            ++   +  ++   +    ++    L    ++F G PV 
Sbjct: 668 EKVLRKSAYKIVSGEADLVEVTPENL----QDFVGKPVF 702


>gi|302335826|ref|YP_003801033.1| ATP-dependent metalloprotease FtsH [Olsenella uli DSM 7084]
 gi|301319666|gb|ADK68153.1| ATP-dependent metalloprotease FtsH [Olsenella uli DSM 7084]
          Length = 633

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 74/344 (21%), Positives = 118/344 (34%), Gaps = 50/344 (14%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVARE 77
            T ++  GQ EA  +L+  +   K         A      L VGPPG GKT LA+ VA E
Sbjct: 178 TTFKDVAGQDEAKESLQEIVSFLKNPDKYTEIGARCPRGALLVGPPGTGKTLLAKAVAGE 237

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
            GV F   SG           A  +  L      +   ++FIDEI  +     ++   + 
Sbjct: 238 AGVTFFQISGSEFVEMFVGRGAAKVRDLFKEANKKAPCIIFIDEIDAVGKKR-DMSLNSN 296

Query: 130 EDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           ++ +  L  ++ E     + K       ++AAT R   L   L    RF   I +   ++
Sbjct: 297 DEREQTLNQLLSEMDGFDNHKG----IVVLAATNRPESLDQALLRPGRFDRRIPVELPDL 352

Query: 186 EDLKTIVQRGAKLTGLA--------VTDEAACEIAMRSRGTPRIAGRLLRRVR------D 231
              + I++  A    +                  A  +      A R +R  R      D
Sbjct: 353 TGREAILKLHAGDVRMEPGINFGSVARQTPGASGADLANMINEAALRAVRMGRKRVSQTD 412

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETI----SA 287
             E         +     L     D + + +     +  +    G  PV   TI    S 
Sbjct: 413 IEESVDVVIAGEKKKSTVLSEHEKDVVAYHETGHAIVAAVQD--GKAPVSKITIVPRTSG 470

Query: 288 GLSEPRDAIEDLIEPYM-IQQGFIQRTP---RGRLLMPIAWQHL 327
            L     A ED  E Y+  ++ + QR      GR    + + H+
Sbjct: 471 ALGFTMQAEED--EHYLTTREEYKQRIAVLCGGRAAEELIFGHM 512


>gi|289580089|ref|YP_003478555.1| ATPase AAA, CDC48 subfamily [Natrialba magadii ATCC 43099]
 gi|289529642|gb|ADD03993.1| AAA family ATPase, CDC48 subfamily [Natrialba magadii ATCC 43099]
          Length = 754

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 61/265 (23%), Positives = 98/265 (36%), Gaps = 40/265 (15%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
           T E+  G       ++  IE      E            VL  GPPG GKT +A+ VA E
Sbjct: 189 TYEDIGGLDNELDQVREMIELPMRHPELFQQLGIEPPKGVLLHGPPGTGKTLMAKAVANE 248

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM 129
           +  +F++ SGP I           L  +    E+    ++FIDE+  ++   EE      
Sbjct: 249 IDADFQTISGPEIMSKYYGESEEQLREVFEEAEENAPAIVFIDELDSIAAKREE-----A 303

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                  +V +  S         R T+IAAT R+  +   L+   RF   I +   + + 
Sbjct: 304 GGDVERRVVAQLLSLMDGLEERGRVTVIAATNRIDDIDPALRRGGRFDREIEIGVPDKDG 363

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            K I+Q   +   L        ++   +  T    G  L  +             RE A 
Sbjct: 364 RKEILQVHTRGMPLVDD----IDLDRYAENTHGFVGADLESLA------------REGAM 407

Query: 248 AALLRLAID-KMGFDQLDLRYLTMI 271
            AL R+  D  +  +++D   L  +
Sbjct: 408 NALRRIRPDLDLESEEIDAEVLETL 432



 Score = 46.6 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 70/194 (36%), Gaps = 15/194 (7%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DV 108
           VL  GPPG GKT LA+ VA E   NF S  GP +           +  +          V
Sbjct: 501 VLMYGPPGTGKTLLAKAVANEAQSNFISIKGPELLNKYVGESEKGVREIFEKARSNAPTV 560

Query: 109 LFIDEIHRLSIIV-EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           +F DEI  ++    +      + +  +  ++ E          L    +IA T R  L+ 
Sbjct: 561 IFFDEIDSIAGERGQRQGDSGVGERVVSQLLTELDGLE----ELEDVVVIATTNRPDLID 616

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
           + L     +   ++    ++     +R  ++         A E+   +  T    G  + 
Sbjct: 617 SALLRPGRLDRHVHVPVPDEAAR--ERIFEVHTRDKPLADAIELEWLAEETEGYVGADIE 674

Query: 228 RVRDFAEVAHAKTI 241
            V   A +A ++  
Sbjct: 675 AVCREASMAASREF 688


>gi|169830305|ref|YP_001716287.1| ATP-dependent metalloprotease FtsH [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169637149|gb|ACA58655.1| ATP-dependent metalloprotease FtsH [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 620

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 65/248 (26%), Positives = 95/248 (38%), Gaps = 27/248 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  E    L+  +E  K         A     VL  GPPG GKT LA+ VA E 
Sbjct: 157 TFSDVAGVDEVKEELQELVEFLKEPRKFSEIGARIPKGVLLFGPPGTGKTLLARAVAGEA 216

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG       V   A  +  L  N +     ++FIDEI  +       L    +
Sbjct: 217 GVPFYSISGSDFVEMFVGVGASRVRDLFENAKKNAPCIVFIDEIDAVGRQRGAGLGGGHD 276

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
           + +  L   +               ++AAT R  +L   L    RF   I +   +I   
Sbjct: 277 EREQTL--NQLLVEMDGFSPTEGIIVVAATNRPDILDPALLRPGRFDRQIIVTQPDINGR 334

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD----FAEVAHAKTITRE 244
           + I+   A+   LA       E+ + +R TP  +G  L  + +     A  A+ K I  E
Sbjct: 335 REILAVHARNKPLADD----VELDVIARRTPGFSGADLENLINEAALLAARANKKRIGME 390

Query: 245 IADAALLR 252
             + A+ R
Sbjct: 391 ELENAIER 398


>gi|182418782|ref|ZP_02950050.1| stage V sporulation protein K [Clostridium butyricum 5521]
 gi|237668580|ref|ZP_04528564.1| stage V sporulation protein K [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182377381|gb|EDT74940.1| stage V sporulation protein K [Clostridium butyricum 5521]
 gi|237656928|gb|EEP54484.1| stage V sporulation protein K [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 909

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 62/300 (20%), Positives = 111/300 (37%), Gaps = 48/300 (16%)

Query: 34  VEACSNLKVFIEAAKARAEALD---------HVLFVGPPGLGKTTLAQVVAR-------- 76
            +    +   I+  K R E L          H  F+G PG GKTT+A+++          
Sbjct: 386 KKEIERIVRLIKYVKNRNEVLKINKEINLSYHFAFMGNPGTGKTTVARLIGDIFYYLGIL 445

Query: 77  ELGVNFRSTSGPVIAK-AGDLAALLTNLEDRD---VLFIDEIHRLSIIVEEILYPAMEDF 132
           E G         ++ K  G+ A L     D+    +LFIDE + L+   E        D+
Sbjct: 446 EKGHVVEVDRSDIVGKFIGETAKLTKKAIDKAMGGILFIDEAYSLAKGGENS-----NDY 500

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAA----TTRVGLLTNP-LQDRFGIPIRLNFYEIED 187
             + +       +S++ N  +FT+I A      R  +  NP LQ R  + I  + Y  E+
Sbjct: 501 GKEAI---ETLLKSMEDNRGKFTVIFAGYKKEMRNLINMNPGLQSRINLMINFDDYTDEE 557

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRG--------TPRIAGRLL-RRVRDFAEVAHA 238
           L  I +  AK     ++++       R +           R+   L+   VR+ A     
Sbjct: 558 LIHIAKNIAKEEYYKLSEDGEKAFIERIQKEKVDENFANARVVRNLMDEAVREKAFRTGD 617

Query: 239 KTITREIADAALLRLAIDKMGFDQLD-LRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
           +T+  E             + F   D ++       +     VG++ +   + +  + +E
Sbjct: 618 ETVCEEELTTLTSEDFGVDLKFTARDSIKEYETQLESL----VGLDNVKNLIKDILNTVE 673



 Score = 42.0 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 58/166 (34%), Gaps = 27/166 (16%)

Query: 45  EAAKARAEALDHVLFVGPPGLGKTTLAQV---VARELGVNFRSTSGPVIA---------- 91
           E      +   +++F G PG GKTT+A++   + + +G+  +     V            
Sbjct: 680 EMGINCEDVSLNMIFSGNPGTGKTTVARIVGKILKAMGILKKGHMVEVTRSDLVGQYVGQ 739

Query: 92  -KAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN 150
                L  +        +LFIDE + L+   E           +  ++ E    R   I 
Sbjct: 740 TGPKTLEKIKEAYGG--ILFIDEAYTLNSGSENDF----GSEAIGTLIKEMEDNRDKLI- 792

Query: 151 LSRFTLIAATTRVGLLTNP---LQDRFGIPIRLNFYEIEDLKTIVQ 193
                +   T  +  L N    L+ R    I  N Y  E+L  I +
Sbjct: 793 ---VIMAGYTKEMKELLNINPGLESRIKFNIEFNDYSGEELFKIFK 835


>gi|170059232|ref|XP_001865273.1| AFG2 [Culex quinquefasciatus]
 gi|167878101|gb|EDS41484.1| AFG2 [Culex quinquefasciatus]
          Length = 783

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/185 (22%), Positives = 68/185 (36%), Gaps = 25/185 (13%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARELG 79
            +  GQ +    L+  IE    R E            +L  GPPG  KT +A+ +A E  
Sbjct: 521 ADIGGQDDLKLKLRQIIEWPIHRPEIFTRLGISPPRGLLMFGPPGCSKTMIAKAIATESK 580

Query: 80  VNFRSTSGPVI--AKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMED 131
           VNF S  G  +     G+    +  L  +       ++F DEI  +          ++ +
Sbjct: 581 VNFLSIKGSELFSMWVGESERAVRELFRKARQVAPSIIFFDEIDAIGGERSAESGSSVRE 640

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPL-----QDRFGIPIRLNFYEIE 186
             L  ++ E     +    L    +IAAT R  L+   L      DR       +F   +
Sbjct: 641 RVLAQILTEIDGVSA----LKNVKIIAATNRPDLIDKALMRPGRLDRIIYVRLPDFATRK 696

Query: 187 DLKTI 191
           ++  I
Sbjct: 697 EIFRI 701



 Score = 39.7 bits (91), Expect = 0.63,   Method: Composition-based stats.
 Identities = 52/273 (19%), Positives = 88/273 (32%), Gaps = 31/273 (11%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH---------- 56
           +++   SQE   +S      L+   G       LK   + A   ++              
Sbjct: 246 IVTTGSSQETQSVSF----CLDSIGGLETVIGELKEITKLALGISKPTSTTHSDVPISRG 301

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTS-GPVIAKA-GDLAALLTNLEDR-------- 106
           VL  G  G GKT L   +A          +   V +K  G+    ++ L ++        
Sbjct: 302 VLVYGVSGTGKTLLVNSLAAHFKCKTVRINCSEVFSKFYGESEGNVSKLFNKALQNYPSP 361

Query: 107 DVLFIDEIHRL-SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
            ++ ++E+H +        +   + +F ++L+     S R  +      T++  TT    
Sbjct: 362 TIIIVEEMHNICPKAEASDIVKRLSNFFVNLLDNLNSSVRGSR------TVLIGTTDNPD 415

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
             NP   R G         I D     Q   K   L        EI   ++ T    G  
Sbjct: 416 SLNPAVRRSGRLDYEFEIPIPDADAREQILLKSLTLQKHALHPDEIKSIAKVTHGYVGAD 475

Query: 226 LRRVRDFAEVAHAKTITREIADAALLRLAIDKM 258
           L  +   A      TIT     +AL  +    M
Sbjct: 476 LVSLVGRASHEAKATITYASMASALQHVKASAM 508


>gi|90425061|ref|YP_533431.1| vesicle-fusing ATPase [Rhodopseudomonas palustris BisB18]
 gi|90107075|gb|ABD89112.1| Vesicle-fusing ATPase [Rhodopseudomonas palustris BisB18]
          Length = 647

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 54/259 (20%), Positives = 88/259 (33%), Gaps = 25/259 (9%)

Query: 28  EEFTGQVEACSNLKVFIEA--------AKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           ++  G     + ++  +E         A+   EA   VL  GPPG GKT +A+ VA E G
Sbjct: 109 DDVGGLAREVARVREMVELPLRFPHVFARLGVEAPKGVLLYGPPGCGKTLIARTVACEAG 168

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMED 131
           V F   +GP I           L  +  +   +   ++F DEI  ++   E +L    + 
Sbjct: 169 VYFLHVNGPEIIQKHYGESEEMLRRIFADARKQPAAIIFFDEIDAIAPNRETVLGDVEKR 228

Query: 132 FQLDLM-VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
               L+ + +G +AR          +IAAT     L   L+   RF   I +   +    
Sbjct: 229 VVAQLLALMDGLTAR------GNIVVIAATNLPNSLDPALRRPGRFDREIGIAPPDRAGR 282

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             I++   +   LA   + A   A            L R             +      A
Sbjct: 283 LEILRIHTRRMPLADDVDLAQIAAAAHGYLGADLAALCREAAMGCTRDLGPRLVAGDPGA 342

Query: 249 ALLRLAIDKMGFDQLDLRY 267
           A       ++  D      
Sbjct: 343 AAALDGDLQVRMDHFHRAL 361



 Score = 37.0 bits (84), Expect = 3.9,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 46/106 (43%), Gaps = 16/106 (15%)

Query: 28  EEFTGQVEACSNLKVFIE--------AAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +E  G  +  + L+  +E         A  +  A   +L  GP G GKT + + +A +  
Sbjct: 382 DEVGGLDDIKALLRETVEWPLKYPQRLAFVKTTAPRGILLTGPTGTGKTLIVRALATQSD 441

Query: 80  VNFRSTSGPVI--AKAGDLAALLTNLEDR------DVLFIDEIHRL 117
           VNF + +GP +     G+    + ++  +       ++F DE+  +
Sbjct: 442 VNFIAVNGPELLSKWVGETERAIRDVFRKARQSAPSIIFFDEVDAI 487


>gi|124806673|ref|XP_001350791.1| cell division protein FtsH, putative [Plasmodium falciparum 3D7]
 gi|23496919|gb|AAN36471.1|AE014850_36 cell division protein FtsH, putative [Plasmodium falciparum 3D7]
          Length = 880

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 58/229 (25%), Positives = 86/229 (37%), Gaps = 20/229 (8%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAKARAE-------ALDHVLFVGPPGLGKTTLAQVVAR 76
           P   EE  G  E+   L   ++  K R +           VL VGPPG GKT LA+ VA 
Sbjct: 145 PIRFEEIAGIDESKLELLEVVDFIKNREKYHEMGARMPKGVLLVGPPGSGKTMLARAVAT 204

Query: 77  ELGVNFRSTSGPVI------AKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPA 128
           E  V +  TSGP          A  +  L  +       ++FIDEI  +           
Sbjct: 205 EANVPYIYTSGPEFIEIYVGQGAKRIRQLFAHARSVAPSIVFIDEIDAIGGKRSSGSVNG 264

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
               + D  + +         N     +I AT R+  L + L    RF   + +   +I 
Sbjct: 265 AGQREHDQTLNQLLVEMDGFSNTVHIMVIGATNRIDTLDSALLRPGRFDRIVYVPLPDIN 324

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
             K I++   K      +D    +I   +R TP  +G  L  V + A +
Sbjct: 325 GRKKILEIYIKKIK---SDLKLEDIEKIARLTPGFSGADLENVVNEATI 370


>gi|171920308|ref|ZP_02691027.2| ATP-dependent metalloprotease FtsH [Ureaplasma parvum serovar 1
           str. ATCC 27813]
 gi|171902723|gb|EDT49012.1| ATP-dependent metalloprotease FtsH [Ureaplasma parvum serovar 1
           str. ATCC 27813]
          Length = 721

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 60/266 (22%), Positives = 93/266 (34%), Gaps = 30/266 (11%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAK-------ARAEALDH 56
            + LL  N +      S +R     +  G  E    L   ++  K       A A     
Sbjct: 218 SDSLLGTNKANAKLTKSGVR---FSDVAGIAEVKEELIEIVDFLKEPKKYVAAGARIPKG 274

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA------KAGDLAALLTNLEDR--DV 108
           V+  GPPG GKT +A+ VA E  V F  T+G           A  +  L          +
Sbjct: 275 VMLYGPPGTGKTLIAKAVAGEANVPFFQTTGSSFEDTFVGVGARRVRELFEKARKSAPAI 334

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +FIDEI  ++         A++D  ++ ++ E     +     S   ++AAT R+  L +
Sbjct: 335 IFIDEIDSVAKKR-GNSLTAVQDQTINQLLSELDGFDTS----SGVIVMAATNRLDTLDD 389

Query: 169 PLQ-----DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAG 223
            +      DR       +  E E +  I  R   L+     ++ A   A  S        
Sbjct: 390 AILRPGRFDRQISVNLPDILEREQILRIHSRNKNLSAKVSLEDIARRTAGFSGAQLENVL 449

Query: 224 R--LLRRVRDFAEVAHAKTITREIAD 247
               L  VRD A   H   +   I  
Sbjct: 450 NEAALLSVRDKATSIHMNHLDEAIDR 475


>gi|42560599|ref|NP_975050.1| ATP-dependent zinc metallopeptidase FtsH [Mycoplasma mycoides
           subsp. mycoides SC str. PG1]
 gi|42492095|emb|CAE76692.1| ATP-dependent zinc metallopeptidase FtsH [Mycoplasma mycoides
           subsp. mycoides SC str. PG1]
          Length = 648

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 56/227 (24%), Positives = 93/227 (40%), Gaps = 22/227 (9%)

Query: 40  LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA------KA 93
           LK   + A A A A   VL  GPPG GKT LA+ VA E  V+F S +G           A
Sbjct: 189 LKQPAKYASAGARAPKGVLMEGPPGTGKTLLAKAVAGEANVSFFSIAGSEFEEMFVGVGA 248

Query: 94  GDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINL 151
             +  +    +     ++FIDEI  +       +     +  L+ ++ E     +     
Sbjct: 249 SRVREMFNEAKKAAPAIIFIDEIDAVGRKRNSAIGTGTNEQTLNQLLVELDGFETN---- 304

Query: 152 SRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAAC 209
           S   ++AAT RV +L   L    RF   I+++  +I++ + I++  A+   +      + 
Sbjct: 305 SGIIVMAATNRVDVLDPALLRPGRFDRVIQVSLPDIKEREQILKLHARNKKID----PSI 360

Query: 210 EIAMRSRGTPRIAGRLLRRVRDFAEV----AHAKTITREIADAALLR 252
           +    +  TP  +G  L  V + A +         I     D A+ R
Sbjct: 361 DWHRIAERTPGFSGAQLENVLNEAAILMVREGKTVIGINEIDEAIDR 407


>gi|332031336|gb|EGI70849.1| Transitional endoplasmic reticulum ATPase TER94 [Acromyrmex
           echinatior]
          Length = 832

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 52/266 (19%), Positives = 86/266 (32%), Gaps = 44/266 (16%)

Query: 31  TGQVEACSNLKVFIEAAKARAEALDH--------------VLFVGPPGLGKTTLAQVVAR 76
            G  +     K   +  +     L H              +L  GPPG GKT +A+ VA 
Sbjct: 230 VGYDDIGGVRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 289

Query: 77  ELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPA 128
           E G  F   +GP I          +L       E     ++FIDE+  ++   E+     
Sbjct: 290 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAIIFIDELDAIAPKREK----- 344

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
                   +V +  +        S   ++AAT R   +   L+   RF   I +   +  
Sbjct: 345 THGEVERRIVSQLLTLMDGMKQSSHVIVMAATNRPNSIDGALRRFGRFDREIDIGIPDAT 404

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
               I++   K   LA  D    EIA  + G        L               +    
Sbjct: 405 GRLEILRIHTKNMKLA-DDVDLEEIAAETHGHVGADLASL--------------CSEAAL 449

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIA 272
                ++ +  +  D +D   L+ +A
Sbjct: 450 QQIREKMDLIDLEDDHIDAEVLSSLA 475



 Score = 55.9 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 48/255 (18%), Positives = 90/255 (35%), Gaps = 20/255 (7%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVARE 77
           T ++  G       L+  ++      +            VLF GPPG GKT LA+ +A E
Sbjct: 504 TWDDIGGLQNVKMELQELVQYPVEHPDKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANE 563

Query: 78  LGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAM 129
              NF S  GP +     G+  A + ++ D+       VLF DE+  ++      +  A 
Sbjct: 564 CQANFISVKGPELLTMWFGESEANVRDVFDKARSAAPCVLFFDELDSIAKSRGGTVGDA- 622

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                D ++ +  +            +I AT R  ++   +    R    I +   + + 
Sbjct: 623 -GGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKS 681

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            + I +   + + +A   + +    +    +      + +R    A     +T  R   +
Sbjct: 682 REAIFRANLRKSPVAKDVDLSYIAKVTHGFSGADLTEICQRACKLAIRQCIETEIRREKE 741

Query: 248 AALLRLAIDKMGFDQ 262
            A    A   M  D 
Sbjct: 742 RANNPSASMDMDEDD 756


>gi|309810915|ref|ZP_07704716.1| ATP-dependent metallopeptidase HflB [Dermacoccus sp. Ellin185]
 gi|308435221|gb|EFP59052.1| ATP-dependent metallopeptidase HflB [Dermacoccus sp. Ellin185]
          Length = 682

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 64/247 (25%), Positives = 97/247 (39%), Gaps = 24/247 (9%)

Query: 24  PRT-LEEFTGQVEACSNLKVFIEAA-------KARAEALDHVLFVGPPGLGKTTLAQVVA 75
           P T   +  G  EA   LK   +         K  A+    VL  GPPG GKT LA+ VA
Sbjct: 161 PTTKFSDVAGADEAVEELKEIKDFLADPEKYEKIGAKIPKGVLLYGPPGTGKTLLARAVA 220

Query: 76  RELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYP 127
            E  V F + SG       V   A  +  L    ++    ++F+DEI  +       L  
Sbjct: 221 GEANVPFYTISGSDFVEMFVGVGASRVRDLFAQAKENSPAIIFVDEIDAVGRHRGAGLGG 280

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
             ++ +  L   +         + +R  LIAAT R  +L   L    RF   I +   ++
Sbjct: 281 GHDEREQTL--NQLLVEMDGFDDRTRVILIAATNRPDILDPALLRPGRFDRQIAVEAPDM 338

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
                I+Q  A+   +A       ++   +R TP  +G  L  V + A +  A+T    I
Sbjct: 339 GGRHHILQVHAQGKPMAKD----VDLMSVARRTPGFSGAELENVLNEAALLTARTNGTII 394

Query: 246 ADAALLR 252
            + AL  
Sbjct: 395 TNEALDE 401


>gi|21226549|ref|NP_632471.1| cell division control protein [Methanosarcina mazei Go1]
 gi|20904821|gb|AAM30143.1| Cell division control protein [Methanosarcina mazei Go1]
          Length = 792

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 60/280 (21%), Positives = 96/280 (34%), Gaps = 41/280 (14%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVAR 76
            T E+  G  +    ++  IE      E   H        V+  GPPG GKT +A+ VA 
Sbjct: 195 TTYEDIGGLGDEIMRVREMIEMPMKHPELFAHLNIEPPKGVILYGPPGTGKTLIAKAVAN 254

Query: 77  ELGVNFRSTSGPVIAKA------GDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPA 128
           E G +F   +GP I           L  +          V+FIDEI  ++   E +    
Sbjct: 255 ESGASFHYIAGPEIVGKFYGESEERLRKIFEEATQEAPSVIFIDEIDSIAPKRENVTGEV 314

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
                  L+          +       +I AT RV  +   L+   RF   I +   + +
Sbjct: 315 ERRVVAQLLTLLDGMEERGQ-----VVVIGATNRVDAIDPALRRPGRFDREIHIGVPDTK 369

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           D   I+Q   +   +        E ++     P +    L       E         E+ 
Sbjct: 370 DRYEILQIHTRGMPIEKD-----EESVTGEPAPEVEIGALD------EFEVETGTEIEVD 418

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETIS 286
           +AA+ R   +K         YL  +A    G  VG + ++
Sbjct: 419 EAAMEREKKEKTNL------YLMSLAERTQG-FVGADLLA 451



 Score = 45.1 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 55/250 (22%), Positives = 86/250 (34%), Gaps = 20/250 (8%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLT 101
           K   +A   +L  GPPG GKT +AQ VA+E   NF S  GP +           +     
Sbjct: 543 KMGIKAPKGILLYGPPGTGKTLIAQAVAKESNANFISVKGPEMFSKWLGESEKAIRETFK 602

Query: 102 NLEDRD--VLFIDEIHRLSIIV-EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIA 158
                   V+F DEI  ++ +   E       +  L+ ++ E          L    +IA
Sbjct: 603 KARQVSPCVVFFDEIDSIAGMQGMESTDSRTSERVLNQLLTE----MDGLETLKDVVIIA 658

Query: 159 ATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSR 216
           AT R  LL   +    RF   + +   + +    I +   + T LA              
Sbjct: 659 ATNRPNLLDPAILRPGRFDRLVYVGAPDRKGRLRIFKIHTQNTPLAEDVNLENLADTTEG 718

Query: 217 GTPRIAGRLLRRVRDFAEVAHAKTITRE--IADAALLRLAIDKMGFDQLDLRYLTMIARN 274
                   + R    FA   +      E      AL ++   K   ++   ++   I   
Sbjct: 719 YVGADIEAVCREAVMFALRENFDIEAIEMRHFREALKKV---KPTINENIAQFYEKIEEQ 775

Query: 275 FGGGPVGIET 284
           F GG   +ET
Sbjct: 776 FKGGQRPVET 785


>gi|85014379|ref|XP_955685.1| replication factor C [Encephalitozoon cuniculi GB-M1]
 gi|74630071|sp|Q8SQM0|RFC4_ENCCU RecName: Full=Replication factor C subunit 4; Short=Replication
           factor C4
 gi|19171379|emb|CAD27104.1| REPLICATION FACTOR C (ACTIVATOR 1) 37kDa SUBUNIT [Encephalitozoon
           cuniculi GB-M1]
          Length = 309

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 83/226 (36%), Gaps = 34/226 (15%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           D  ++  +P  +++  G       + + IE+       + H+LF GPPG GKTT A+++A
Sbjct: 2   DLLVNKYQPSEIQDIVGNEATMELVSLMIES-----RDMPHLLFTGPPGTGKTTCAKILA 56

Query: 76  R----------ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           R          EL  +       V       A       +  ++ +DE   ++   ++ +
Sbjct: 57  RRLLGNKEGLLELNASDERGIDTVRTTIKSFAQRRVKDCEFKIIILDEADSMTTTAQQAM 116

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
                              R ++I+ S    I        +  P+Q R  I       E 
Sbjct: 117 R------------------RVMEIHSSECRFILICNVFTKIFEPIQSRCAILRFDRI-EQ 157

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
             +   ++  ++  G+ +T EA   +   S G  R +  +L+   +
Sbjct: 158 SVILKRLKEISEGEGIRITAEALDLVVELSDGDMRQSLNILQACIN 203


>gi|282857610|ref|ZP_06266828.1| AAA ATPase, CDC48 [Pyramidobacter piscolens W5455]
 gi|282584548|gb|EFB89898.1| AAA ATPase, CDC48 [Pyramidobacter piscolens W5455]
          Length = 710

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 50/208 (24%), Positives = 79/208 (37%), Gaps = 29/208 (13%)

Query: 9   SRNVSQEDADISLLRPRTL--EEFTGQVEACSNLKVFIEAA-----------KARAEALD 55
           S +V  E A I  L+P+ +   +  G     + L+   E             +   E   
Sbjct: 150 STDVVLERAQIGALKPKKITYADIGG---LDAQLRRIREMIELPLKFPEAFVRLGVEPPK 206

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLEDR--D 107
            VL  GPPG GKT +A+ VA E    F S SGP I           L A+    +     
Sbjct: 207 GVLLYGPPGTGKTVIARAVANESDAWFTSISGPEIIGKYYGESEERLRAVFEEAQQNAPA 266

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           ++FIDE+  ++   EE+     E      +V +  +      +  +  +IAAT     L 
Sbjct: 267 IVFIDEVDAIAPKREEM---GGEKQVERRVVAQLLTLMDGLSSRGQVVVIAATNIPNTLD 323

Query: 168 NPLQD--RFGIPIRLNFYEIEDLKTIVQ 193
             L+   RF   I +   +      I++
Sbjct: 324 PALRRPGRFDREIAVPIPDRNGRLEILK 351



 Score = 47.0 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 46/270 (17%), Positives = 92/270 (34%), Gaps = 31/270 (11%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVAR 76
            T ++  G  +A   L   ++    + +            ++  GP G GKT L + +A 
Sbjct: 442 TTWDDVGGLKDAKEKLVEAVQWPLKQGDLFRRWGVTPPRGIMIHGPSGTGKTLLVKALAH 501

Query: 77  ELGVNFRSTSGPVI------AKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPA 128
           E GVNF +  GP +           L  +          +L+ DEI  L+         +
Sbjct: 502 ESGVNFITVKGPSLMSRYVGESERALREVFRTARQAAPSILYFDEIDSLTPRRGND--GS 559

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
            +    D ++ +  +  S   ++    ++A T R+  +   L    RF + + L   +  
Sbjct: 560 SQAQTADRVISQFLAEMSGIEDMGGVVVVATTNRIDRIDPALFSAGRFELALELPMPDEA 619

Query: 187 DLKTIVQRGAKLTGLAVTD-----------EAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
             + I++   +   LA                A   A+    +       +R   D +  
Sbjct: 620 AREEILRIHLRKLPLAGLSFRDLAVRTEGMNGAEIAALCHAASMEALREQIRNGTDVSPC 679

Query: 236 AHAKTITREIADAALLRLAIDKMGFDQLDL 265
              +          L R A+++   D+ D+
Sbjct: 680 LERRHFEAAFRAEKLRRQALERENGDEADV 709


>gi|301320650|gb|ADK69293.1| ATP-dependent metallopeptidase HflB [Mycoplasma mycoides subsp.
           mycoides SC str. Gladysdale]
          Length = 648

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 56/227 (24%), Positives = 93/227 (40%), Gaps = 22/227 (9%)

Query: 40  LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA------KA 93
           LK   + A A A A   VL  GPPG GKT LA+ VA E  V+F S +G           A
Sbjct: 189 LKQPAKYASAGARAPKGVLMEGPPGTGKTLLAKAVAGEANVSFFSIAGSEFEEMFVGVGA 248

Query: 94  GDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINL 151
             +  +    +     ++FIDEI  +       +     +  L+ ++ E     +     
Sbjct: 249 SRVREMFNEAKKAAPAIIFIDEIDAVGRKRNSAIGTGTNEQTLNQLLVELDGFETN---- 304

Query: 152 SRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAAC 209
           S   ++AAT RV +L   L    RF   I+++  +I++ + I++  A+   +      + 
Sbjct: 305 SGIIVMAATNRVDVLDPALLRPGRFDRVIQVSLPDIKEREQILKLHARNKKID----PSI 360

Query: 210 EIAMRSRGTPRIAGRLLRRVRDFAEV----AHAKTITREIADAALLR 252
           +    +  TP  +G  L  V + A +         I     D A+ R
Sbjct: 361 DWHRIAERTPGFSGAQLENVLNEAAILMVREGKTVIGINEIDEAIDR 407


>gi|240103779|ref|YP_002960088.1| AAA family ATPase, CDC48 subfamily (Cdc48) [Thermococcus
           gammatolerans EJ3]
 gi|239911333|gb|ACS34224.1| AAA family ATPase, CDC48 subfamily (Cdc48) [Thermococcus
           gammatolerans EJ3]
          Length = 838

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 67/304 (22%), Positives = 113/304 (37%), Gaps = 36/304 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
           T E+  G  +A   ++  +E      E            VL  GPPG GKT LA+ VA E
Sbjct: 209 TYEDIGGLSDAIQKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANE 268

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM 129
              +F + +GP I           L  +    E+    ++FIDEI  ++   EE++    
Sbjct: 269 ANAHFIAINGPEIMSKFYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVVGEVE 328

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
           +     L+               +  +IAAT R   +   L+   RF   I +   + + 
Sbjct: 329 KRVVSQLLT-----LMDGLKGRGKVIVIAATNRPDAIDPALRRPGRFDREIEVGVPDKQG 383

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH--AKTITREI 245
            K I+Q    +    +  E + +         R+AGR  +   + A +        + E 
Sbjct: 384 RKEILQ----IHTRGMPLEPSFDKEEVLTVLDRLAGRTDKFAEEVAGIRPLIEAAQSEEE 439

Query: 246 ADAALLRLA-IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
               L +   +      +L  R L  IA    G  VG + ++A   E       ++   +
Sbjct: 440 IKGILKKNGELYSEVKAKLIDRMLDRIADRTHG-FVGAD-LAALAREAAM----VVLRRL 493

Query: 305 IQQG 308
           IQ+G
Sbjct: 494 IQEG 497



 Score = 53.9 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 48/241 (19%), Positives = 80/241 (33%), Gaps = 22/241 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVARE 77
             ++  G  +    L+  +E      +A           +L  GPPG GKT LA+ VA E
Sbjct: 544 RWDDIGGLEDVKQELREAVEWPLKYPKAFERLGITPPKGILLYGPPGTGKTLLAKAVANE 603

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAM 129
              NF +  GP +           +  +          V+FIDEI  ++           
Sbjct: 604 SEANFIAIRGPEVLSKWVGETEKRIREIFRKARQAAPTVVFIDEIDAIAPAR----GSYE 659

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
               LD ++ +  +        S   +I AT R  ++   L    RF   I +   + + 
Sbjct: 660 GGRHLDTLINQLLTEMDGIQENSGVVVIGATNRPDIIDPALLRPGRFDRLILVPAPDEKA 719

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
              I +   +   LA   + A         +      L+R     A       + REI +
Sbjct: 720 RLEIFKVHTRRVPLAEDVDLAELAKKTEGYSGADIEALVREAALIALRRAVSRLPREIVE 779

Query: 248 A 248
            
Sbjct: 780 K 780


>gi|150401347|ref|YP_001325113.1| AAA family ATPase, CDC48 subfamily protein [Methanococcus aeolicus
           Nankai-3]
 gi|150014050|gb|ABR56501.1| AAA family ATPase, CDC48 subfamily [Methanococcus aeolicus
           Nankai-3]
          Length = 723

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 54/199 (27%), Positives = 79/199 (39%), Gaps = 29/199 (14%)

Query: 28  EEFTGQVEACSNLKVFIEA--------AKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           ++  G  E    ++  +E          K   E    VL  GPPG GKT LA+ VA E G
Sbjct: 176 DDIGGLKEEVKKIREMVELPMRYPELFDKLGIEPPKGVLLAGPPGTGKTLLAKAVANEAG 235

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPA--- 128
            NF + +GP I          +L  +  + E+    ++FIDEI  ++   +E        
Sbjct: 236 ANFYTINGPEIMSKYVGETEENLRKIFEDAEEEAPSIIFIDEIDSVAPKRDEASGEVERR 295

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           M    L LM G G   + V I        AAT R   L   L+   RF   + +   + +
Sbjct: 296 MVAQLLTLMDGLGGRGQVVVI--------AATNRPDSLDGALRRPGRFDRELTIGVPDRK 347

Query: 187 DLKTIVQRGAKLTGLAVTD 205
             K I+Q   +   L   D
Sbjct: 348 GRKEILQIHTRNMPLENVD 366



 Score = 53.2 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 84/249 (33%), Gaps = 23/249 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
             E+  G  E   +L   +E      E            VL  GPPG GKT LA+ VA E
Sbjct: 446 RWEDIGGLDEIKQDLIEAVEWPIKNKEVFEKMGIRPPKGVLLFGPPGTGKTMLAKAVANE 505

Query: 78  LGVNFRSTSGPVI--AKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAM 129
              NF S  GP I     G+    +  +  +       V+F DEI  ++      +    
Sbjct: 506 SQANFISVKGPEIFSKWVGESEKAIREMFKKARQAAPTVIFFDEIDSIAPTRGSDMG--- 562

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                + +V +  +            ++AAT R  +L + L    R    + +     + 
Sbjct: 563 GSGVAEKVVNQLLTELDGLEEPKDVVVVAATNRPDMLDSALLRPGRLDRIVLVPVPNSDA 622

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA--EVAHAKTITREI 245
              I +  AK   +A   +           T      + R     A  E  +A+ +  + 
Sbjct: 623 RYKIFEVHAKNMPIAEEVDLKKLAEETEGYTGADIEAICREAAMTALRENINAEKVELKH 682

Query: 246 ADAALLRLA 254
              A+ ++ 
Sbjct: 683 FKKAMKKIR 691


>gi|222055725|ref|YP_002538087.1| ATP-dependent protease La [Geobacter sp. FRC-32]
 gi|221565014|gb|ACM20986.1| ATP-dependent protease La [Geobacter sp. FRC-32]
          Length = 809

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 52/266 (19%), Positives = 93/266 (34%), Gaps = 41/266 (15%)

Query: 55  DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA------------ALLTN 102
             +  VGPPG+GKT+L + +AR  G  F   S   +    ++              ++ +
Sbjct: 356 PIICLVGPPGVGKTSLVKSIARATGRKFIKMSLGGVRDEAEIRGHRRTYVGAMPGKIIQS 415

Query: 103 LED----RDVLFIDEIHRLSI--------IVEEILYPAMEDFQLDLMVGEGPSARSVKIN 150
           ++       V  +DEI ++S          + E+L P       D           V  +
Sbjct: 416 MKRAGTINPVFLLDEIDKMSTDFRGDPASALLEVLDPEQNFTFTD-------HFLDVDYD 468

Query: 151 LSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACE 210
           LSR   +     +  +  PL DR  +     + E+E L       AK   +     A   
Sbjct: 469 LSRVMFVTTANSLHSIPRPLLDRLEVIRLDGYLEMEKLA-----IAKQYLVKKQLAAHGL 523

Query: 211 IAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTM 270
               +  T +    +L  +R +   A  + + REIA+           G +    +    
Sbjct: 524 EEKNATFTDK---AILEIIRHYTREAGVRNLEREIANICRKTAHALVKGKNSRSKKI--S 578

Query: 271 IARNFGGGPVGIETISAGLSEPRDAI 296
           I+       +G+     G+ E  D+I
Sbjct: 579 ISDREIKNFLGVPRFRYGMGEETDSI 604


>gi|307594201|ref|YP_003900518.1| AAA family ATPase [Vulcanisaeta distributa DSM 14429]
 gi|307549402|gb|ADN49467.1| AAA family ATPase, CDC48 subfamily [Vulcanisaeta distributa DSM
           14429]
          Length = 737

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 59/251 (23%), Positives = 94/251 (37%), Gaps = 27/251 (10%)

Query: 24  PR-TLEEFTGQVEACSNLKVFIE--------AAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           P+    +  G  E    L+  IE          K   +    +L  GPPG GKT LA+ V
Sbjct: 456 PKVRWSDIGGLEEVKQELREAIEWPLKYPERFRKMGIKPPKGILLFGPPGTGKTLLAKAV 515

Query: 75  ARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILY 126
           A E   NF +  GP I     G+    +  +  +       V+F DEI  ++        
Sbjct: 516 ATESNANFIAVRGPEILSKWFGESERAIREIFKKARMAAPCVIFFDEIDAIAPAR----G 571

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
            A +   +D +V +  +       L    +IAAT R  ++   L    RF   I +   +
Sbjct: 572 YAEDSPAMDRIVAQLLAEMDGVSRLDNVVVIAATNRPDIVDPALLRPGRFDRIIYVPPPD 631

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR---VRDFAEVAHAKTI 241
           +     I++   K   LA  D    E+A  + G       LL R   +    EV  A  +
Sbjct: 632 LRARFEILKIHTKNMPLA-KDVDLMELAKMTEGYTGADIELLAREAGLLAMREVNGAGEV 690

Query: 242 TREIADAALLR 252
           + +    A+ +
Sbjct: 691 SMKHFIEAMKK 701



 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 60/287 (20%), Positives = 95/287 (33%), Gaps = 38/287 (13%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAE--------AL 54
           +   L+      E+ +I  +   T E+     EA   ++  +E      E          
Sbjct: 163 EDTNLMIYEKPVENVNIPRV---TWEDIGDLKEAKEKIRELVELPLKHPEIFEYLGIEPP 219

Query: 55  DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR-- 106
             VL +GPPG GKT LA+ VA E    F + +GP I           L  +    +    
Sbjct: 220 KGVLLIGPPGTGKTLLAKAVATETNAYFIAINGPEIVSKYYGESEAKLREIFEEAKKNAP 279

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
            ++FIDEI  ++   EE+     +     L+               +  +I AT R   +
Sbjct: 280 AIIFIDEIDAIAPKREEVTGEVEKRIVAQLLT-----LMDGLQERGQVIVIGATNRPEAV 334

Query: 167 TNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGR 224
              L+   RF   I +N  + E    I+Q   +   LA   +      +    T      
Sbjct: 335 DPALRRPGRFDREIWINPPDTEGRYEILQVHTRNMPLAKDVDLRKLAEITYGYTGADIAA 394

Query: 225 LLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMI 271
           L R     A               AL    +D    D+   + L  I
Sbjct: 395 LAREAAMRA------------LRKALQSGILDVNKEDEEIRKDLEKI 429


>gi|294463363|gb|ADE77215.1| unknown [Picea sitchensis]
          Length = 442

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 56/262 (21%), Positives = 88/262 (33%), Gaps = 30/262 (11%)

Query: 20  SLLRPRTLE-------EFTGQVEACSNLKVFIE--------AAKARAEALDHVLFVGPPG 64
           S +R  TLE       +  GQ E    LK  +E          +        VL  GPPG
Sbjct: 156 SAMREVTLEIPKVCWSDIGGQAEVKQQLKEAVEWPQKYQHAFLRIGTHPPRGVLMFGPPG 215

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLAALLTNLEDR------DVLFIDEIHR 116
             KT +A+ VA E G+NF +  GP +     G+    + +L  +       ++F DEI  
Sbjct: 216 CSKTIMARAVASEAGLNFLAVKGPELFSKWVGESEKAIQSLFAKARAAAPSIIFFDEIDG 275

Query: 117 LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RF 174
           L++  E            D ++ +              T+IAAT R   +   L    RF
Sbjct: 276 LAVAREHSSGAISVG---DRVMSQLLVEMDGLNPRIGVTVIAATNRPDKIDAALMRPGRF 332

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA- 233
              + +      D K I     +              ++    T      + R     A 
Sbjct: 333 DRLVYVGLPNQADRKEIFDIHMRKMPCGSDLTMLELASLTDGYTGADISSVCREAAMAAL 392

Query: 234 -EVAHAKTITREIADAALLRLA 254
            E    + ++      AL R+ 
Sbjct: 393 EENIGIQEVSMRHFKFALARVQ 414


>gi|281207204|gb|EFA81387.1| AAA ATPase domain-containing protein [Polysphondylium pallidum
           PN500]
          Length = 701

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 49/287 (17%), Positives = 90/287 (31%), Gaps = 38/287 (13%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAKARAE-------ALDHVLFVGPPGLGKTTLAQVVAR 76
           P T ++  G  +   +L   +     R +           +L  GPPG GKT +A+ VA 
Sbjct: 426 PVTWDDVVGLDKVKQSLMEAVILPNLRPDVFVGLRSPPKGLLLFGPPGNGKTMIAKAVAY 485

Query: 77  ELGVNFRSTSGPVI------AKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPA 128
           E    F S S   +           + AL          ++FIDE+  L     E     
Sbjct: 486 ESKATFFSISASSLTSKYVGEGEKLVRALFAVAGYYQPSIIFIDEVDSLLTERSEGESDH 545

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
               + ++++       +      R  ++ AT R   L      RF   I +   E    
Sbjct: 546 TRRLKTEILIQFDGVKTNGA---ERILVMGATNRPEELDEAALRRFVKRIYVGLPEKSTR 602

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             I++   +                       +    +  + D      A  +     DA
Sbjct: 603 LDILKHLLR------------------DQNHNLTNSQMSAIADATSGYSAFDLNALCKDA 644

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDA 295
           A   +   ++G +  DL+   +   +       ++ I A +S+    
Sbjct: 645 AYEPIR--QLGMEIKDLKLNQIRPISCKDFKNSLKQIRASVSQDSLT 689


>gi|308233642|ref|ZP_07664379.1| membrane protease FtsH catalytic subunit [Atopobium vaginae DSM
           15829]
 gi|328944405|ref|ZP_08241867.1| ATP-dependent metalloprotease FtsH [Atopobium vaginae DSM 15829]
 gi|327490989|gb|EGF22766.1| ATP-dependent metalloprotease FtsH [Atopobium vaginae DSM 15829]
          Length = 717

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 65/252 (25%), Positives = 96/252 (38%), Gaps = 28/252 (11%)

Query: 23  RPRT-LEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           RP+T  ++  G  EA   LK             K  A+    VL VG PG GKT LA+ V
Sbjct: 243 RPKTTFKDVAGIDEAVEELKEVRDFLKDPKRYKKLGAKIPRGVLLVGAPGTGKTLLAKAV 302

Query: 75  ARELGVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           A E GV F S SG            ++  DL     +     ++FIDEI  +       +
Sbjct: 303 AGEAGVPFFSISGSDFVEMFVGVGASRVRDLFKQAKHAAP-SIIFIDEIDAVGRQRGAGV 361

Query: 126 YPAMEDFQLD---LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRL 180
               ++ +     L+V     A S  + L     IAAT R  +L   L    RF   +++
Sbjct: 362 GGGHDEREQTLNQLLVEMDGFAESDAVIL-----IAATNRPDILDPALLRPGRFDRRVQV 416

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           +  +I+  KTI++  A+   LA          +    T      LL          H + 
Sbjct: 417 DPPDIKGRKTILEVHAQNKPLAPDVRLGALAKLTPGFTGADLANLLNEAALLTARRHKQI 476

Query: 241 ITREIADAALLR 252
           I     + A+ R
Sbjct: 477 IGMNEIEEAMER 488


>gi|196228744|ref|ZP_03127610.1| ATPase associated with various cellular activities AAA_3
           [Chthoniobacter flavus Ellin428]
 gi|196227025|gb|EDY21529.1| ATPase associated with various cellular activities AAA_3
           [Chthoniobacter flavus Ellin428]
          Length = 335

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 53/238 (22%), Positives = 80/238 (33%), Gaps = 38/238 (15%)

Query: 23  RPRTLEE----FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           RPR L E      GQ +    + + + A         H L  G PGL KT L + +A+  
Sbjct: 25  RPRILAELGKAIVGQQDVIEQILIALLAG-------GHCLITGAPGLAKTLLVKSIAQIF 77

Query: 79  GVNFRSTSGPVIAKAGDLAAL---LTNLEDRDVLFI-----------DEIHRLSIIVEEI 124
            + FR           D+  +       E R + F+           DEI+R     +  
Sbjct: 78  HLEFRRIQFTPDLMPTDITGVEILQDTAEGRQLSFVKGPIFGSMILADEINRTPPKTQAA 137

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPL----QDRFGIPIRL 180
           L  AM++ Q+        S R   +    F L          T PL     DRF   + +
Sbjct: 138 LLEAMQEHQVT------ASGRRYALPEPFFVLATQNPIEMEGTYPLPEAQLDRFMFNVVI 191

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPR---IAGRLLRRVRDFAEV 235
           ++    D   +VQR    +   +      E  +      R   IA  L+R     A  
Sbjct: 192 DYLPENDEVAVVQRTTSASEEKIETLFTGEDVLAFHALVRKVPIAEDLVRFAVRLAAA 249


>gi|115439733|ref|NP_001044146.1| Os01g0730900 [Oryza sativa Japonica Group]
 gi|57899145|dbj|BAD87007.1| putative DNA polymerase III subunit gamma/tau [Oryza sativa
           Japonica Group]
 gi|113533677|dbj|BAF06060.1| Os01g0730900 [Oryza sativa Japonica Group]
          Length = 622

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 83/222 (37%), Gaps = 16/222 (7%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFR 83
           P+T ++  GQ      L     A   R   L +V F GP G GKT+ A+V A+ L  +  
Sbjct: 358 PKTFKDVVGQSLVVQALS---NAVLRRKIGLVYV-FYGPHGTGKTSCARVFAKALNCHSP 413

Query: 84  STSGP----VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
               P        A +L    + +E   V  ID    + ++   +L PA   +++ +   
Sbjct: 414 EHPRPCDSCTSCIAHNLGKSRSVMEIGPVGNIDMDGIVDVLDNVMLSPAPSHYRVFIFDD 473

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-------RFGIPIRLNFYEIEDLKTIV 192
                      +S+    A    V +L +P  D       R          E + + T +
Sbjct: 474 CDTLPADTWSLISKVVDRAPRRVVFILVSPNLDLPHIILSRCQKFFFPKLKECDIVNT-L 532

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
           Q  +    L V  +A   IA RS G+ R A   L ++    +
Sbjct: 533 QWISTSESLDVDRDALKLIASRSDGSLRDAEMTLDQLSLLGQ 574


>gi|91788139|ref|YP_549091.1| DNA polymerase III subunits gamma and tau [Polaromonas sp. JS666]
 gi|91697364|gb|ABE44193.1| DNA polymerase III, subunits gamma and tau [Polaromonas sp. JS666]
          Length = 610

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 54/185 (29%), Gaps = 43/185 (23%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARE 77
               RPR   E  GQ      L   +   +     L H  LF G  G+GKTT+++++A+ 
Sbjct: 7   ARKYRPRNFSEMVGQSHVVQALGNALSTRR-----LHHAYLFTGTRGVGKTTVSRILAKS 61

Query: 78  LGV-----------------------------NFRSTSGPVIAKAGDLAALLTNL----- 103
           L                               ++            ++A LL        
Sbjct: 62  LNCTGVDGQGDITAEPCGVCQACIDIDSGRFVDYTELDAASNRGVDEIAQLLEQAVYKPV 121

Query: 104 -EDRDVLFIDEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAAT 160
                V  IDE+H L+      +   +E+    L  ++      +     LSR       
Sbjct: 122 VGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPATVLSRCLQFNLR 181

Query: 161 TRVGL 165
                
Sbjct: 182 PMAPE 186


>gi|242012196|ref|XP_002426821.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212511028|gb|EEB14083.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 502

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 48/256 (18%), Positives = 88/256 (34%), Gaps = 24/256 (9%)

Query: 26  TLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  EA   LK  +       + +    +    VL VGPPG GKT LA+ VA E 
Sbjct: 70  TFRDVKGAEEAKQELKEIVAFLRNPEKFSILGGKLPKGVLLVGPPGTGKTLLARAVAGEA 129

Query: 79  GVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
            V F   +GP            +  DL      +    V+FIDEI  +            
Sbjct: 130 KVPFFHAAGPEFDEVLVGQGARRVRDLFKAAKEVAP-CVIFIDEIDSVGSKRTNSTLHPY 188

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            +  ++ ++ E       +       ++ AT R   L   L    RF + + +   +  +
Sbjct: 189 ANQTINQLLSEMDGFHQNEG----VIVLGATNRRNDLDKALLRPGRFDVEVMVPIPDYTE 244

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            K I++           +            T      ++ +    A +  A ++T    +
Sbjct: 245 RKEIIEYYLSKILYKDINLELLARGT-VGFTGADLENMVNQAALRAAIEGADSVTMAYLE 303

Query: 248 AALLRLAIDKMGFDQL 263
           +A  ++ +      ++
Sbjct: 304 SAKDKILMGPERKSRM 319


>gi|257076346|ref|ZP_05570707.1| cell division cycle protein 48 [Ferroplasma acidarmanus fer1]
          Length = 744

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 58/253 (22%), Positives = 96/253 (37%), Gaps = 23/253 (9%)

Query: 28  EEFTGQVEACSNLKVFIEA--------AKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
            +  G     S L+  +E         ++    A    L  GPPG GKT LA+ VA E  
Sbjct: 467 NDIGGLEALKSELREAVELPLLNPDVFSRLGIRAPKGFLLYGPPGTGKTLLAKAVANESN 526

Query: 80  VNFRSTSGP-VIAK-AGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMED 131
            NF S  GP V++K  GD    +  +  +       ++F+DEI  ++         +M+ 
Sbjct: 527 ANFISVKGPEVLSKWVGDSEKAVREIFKKAKQVSPAIIFMDEIDSIAPRR----GTSMDS 582

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
              + +V +  ++      L    +IAAT R  ++   L    RF   I +   E E   
Sbjct: 583 GVTERIVNQLLTSMDGIEVLKGVVVIAATNRPDIIDPALLRAGRFDKIIYIPPPEEEGRL 642

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            I++   +   LA  D    +IA ++ G        L R        +    T    DA 
Sbjct: 643 KILEVHTRKMPLA-KDVDLKDIARKTDGYVGADLENLCREAGMMAYRNNPEATEVNQDAF 701

Query: 250 LLRLAIDKMGFDQ 262
           +  +   +   D+
Sbjct: 702 IKAMKTIRPSIDK 714



 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 46/209 (22%), Positives = 78/209 (37%), Gaps = 23/209 (11%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARELG 79
           E+  G  +    ++  IE      E            VL  GPPG GKT +A+ VA E G
Sbjct: 190 EDIGGLSDQLGKIREIIELPLKHPELFERLGITPPKGVLLNGPPGTGKTLIAKAVANESG 249

Query: 80  VNFRSTSGPVIAKA------GDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAMED 131
            NF + +GP I           L  +    ++    ++FIDEI  ++   E+     ++ 
Sbjct: 250 ANFFAINGPEIMSKYYGQSEQKLREIFQKADESEPSIIFIDEIDSIAPKRED-----VQG 304

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
                +V +  +      +     +I AT R+  +   L+   RF   I +   + +   
Sbjct: 305 EVERRVVAQLLTLMDGLKDRGHVIVIGATNRLDAVDPALRRPGRFDREIVIGVPDKKGRM 364

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGT 218
            I+    +   L + DE   E   R    
Sbjct: 365 EILTIHTRGMPLGMDDEKESEFFSRIADI 393


>gi|298674165|ref|YP_003725915.1| AAA ATPase central domain-containing protein [Methanohalobium
           evestigatum Z-7303]
 gi|298287153|gb|ADI73119.1| AAA ATPase central domain protein [Methanohalobium evestigatum
           Z-7303]
          Length = 360

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 79/205 (38%), Gaps = 20/205 (9%)

Query: 26  TLEEFTGQVEACSNLKV---FIEA-AKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
             ++  GQ  A    K+   F+E   K    A  ++LF GP G GKT LA+ +A +  V 
Sbjct: 109 NFDDVIGQDNARKKCKLVEKFLENPDKFGKWAPRNILFYGPSGTGKTMLAKGLANKTDVP 168

Query: 82  FRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEIH--RLSIIVEEILYPAMED 131
             +     +     G+ A  +  + DR       ++FIDE+    L    +E+       
Sbjct: 169 IITIKATELIGEYVGEGAKQIHQVYDRAENMAPCIIFIDELDAVALDRRYQEL------R 222

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
             +  +V    +     I       I AT R   L + + +RF   I     +  +   I
Sbjct: 223 GDVAEIVNALLTEMDGIIERKGVCTIGATNRKDTLDSAVSNRFEEEIEFVLPDENERLKI 282

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSR 216
           ++   K   L + +    +IA  ++
Sbjct: 283 IETNIKTFPLPIKNVNISKIAKLTQ 307


>gi|149458861|ref|XP_001516769.1| PREDICTED: similar to replication factor C/activator 1 subunit,
           partial [Ornithorhynchus anatinus]
          Length = 407

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 46/239 (19%), Positives = 80/239 (33%), Gaps = 38/239 (15%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGP 62
           D          Q    +   RP  L E  G  +  S L+VF     A+   + +++  GP
Sbjct: 76  DPRERGESQKPQLRPVVEKYRPVKLNEIVGNEDTVSRLEVF-----AKEGNVPNIIIAGP 130

Query: 63  PGLGKTTLAQVVAR------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDV 108
           PG GKTT    +AR            EL  +       V  K    A     L      +
Sbjct: 131 PGTGKTTSILCLARALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPRGRHKI 190

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           + +DE   ++   ++ L   ME +                   +RF    A      +  
Sbjct: 191 IVLDEADSMTDGAQQALRRTMEIYSKT----------------TRF--ALACNASDKIIE 232

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
           P+Q R  +       + + L  +++   +   +  +D+    I   ++G  R A   L+
Sbjct: 233 PIQSRCAVLRYTKLTDAQVLARLLK-VIEKEDVPHSDDGLEAIVFTAQGDMRQALNNLQ 290


>gi|186470563|ref|YP_001861881.1| ATPase central domain-containing protein [Burkholderia phymatum
           STM815]
 gi|184196872|gb|ACC74835.1| AAA ATPase central domain protein [Burkholderia phymatum STM815]
          Length = 637

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 58/251 (23%), Positives = 95/251 (37%), Gaps = 26/251 (10%)

Query: 26  TLEEFTGQVEACSNL---KVFIEAAKA----RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           + E+  G  EA + L   + ++   K        A   +L  G PG+GKT LAQ +A E 
Sbjct: 188 SFEDVIGAGEAKAALSDIQAYLTNPKQFTGMGVRAPCGILMTGGPGVGKTRLAQALAGEC 247

Query: 79  GVNFRSTSGP---------VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP-- 127
           G NF S +G           I K   L  L        V+FIDE   L+   +    P  
Sbjct: 248 GANFISITGSYFSAKYYGVGIQKVKHLFELARKNAP-TVIFIDEADGLAKRTDTGGGPVE 306

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           A  +  ++ ++ E     S +       ++AAT     L   L+   RF   + +   ++
Sbjct: 307 AESNRVINQLLAEMDGFASNEG----VIIVAATNHPDNLDEALRRPGRFDRTVAVRLPDL 362

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRG-TPRIAGRLLRRVRDFAEVAHAKTITRE 244
           ED   I++  A        D    ++A  + G +P     ++ +    A  A   T+   
Sbjct: 363 EDRAEIIRFYAAKLTSKADDIDFTQLARLTTGLSPATLSMVVNQAGLVARKAGDDTVAAR 422

Query: 245 IADAALLRLAI 255
               A+    I
Sbjct: 423 HFIEAIKIARI 433


>gi|73920780|sp|Q07590|SAV_SULAC RecName: Full=Protein SAV
          Length = 780

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 71/192 (36%), Gaps = 15/192 (7%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLED 105
           +    +L  GPPG GKT LA+ +A E+G  F + +GP I           +  +    E+
Sbjct: 244 DPPKGILLYGPPGTGKTLLARALANEIGAYFITVNGPEIMSKFYGESEQRIREIFKEAEE 303

Query: 106 R--DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
               ++FIDEI  ++   E++     +     L+               R  +I AT R 
Sbjct: 304 NAPSIIFIDEIDAIAPKREDVTGEVEKRVVAQLLT-----LMDGIKGRGRVIVIGATNRP 358

Query: 164 GLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRI 221
             +   L+   RF   I +   + +  K I+Q   +   +    +      M    T   
Sbjct: 359 DAIDPALRRPGRFDREIEIRPPDTKGRKDILQVHTRNMPITDDVDLDKLAEMTYGYTGAD 418

Query: 222 AGRLLRRVRDFA 233
              L +    +A
Sbjct: 419 LAALAKEAAIYA 430



 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 43/189 (22%), Positives = 71/189 (37%), Gaps = 23/189 (12%)

Query: 24  PR-TLEEFTGQVEACSNLKVFIE--------AAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           P+    +  G       L+  +E          K+       +L  GPPG GKT LA+ V
Sbjct: 482 PKVNWNDIGGLDNVKQQLREAVEWPLRFPELFTKSGVTPPKGILLFGPPGTGKTMLAKAV 541

Query: 75  ARELGVNFRSTSGPVI------AKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILY 126
           A E G NF +  GP I           +  +          V+F DEI  ++ I      
Sbjct: 542 ATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPTVIFFDEIDSIAPIR----G 597

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
            + +    + +V +  +     + L++  +IAAT R  +L   L    RF   I +   +
Sbjct: 598 LSTDSGVTERIVNQLLAEMDGIVPLNKVVIIAATNRPDILDPALLRPGRFDRLIYVPPPD 657

Query: 185 IEDLKTIVQ 193
                 I++
Sbjct: 658 KTARFEILK 666


>gi|68074487|ref|XP_679159.1| cell division protein FtsH [Plasmodium berghei strain ANKA]
 gi|56499835|emb|CAI04925.1| cell division protein FtsH, putative [Plasmodium berghei]
          Length = 849

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 60/260 (23%), Positives = 95/260 (36%), Gaps = 20/260 (7%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAKAR-------AEALDHVLFVGPPGLGKTTLAQVVAR 76
           P   +E  G  E+   L   ++  K R       A     VL VGPPG GKT LA+ VA 
Sbjct: 148 PVKFDEIAGIDESKLELLEVVDFIKNRERYQEMGARMPKGVLLVGPPGSGKTMLARAVAT 207

Query: 77  ELGVNFRSTSGPVI------AKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPA 128
           E  V +  TSGP          A  +  L ++       ++FIDEI  +           
Sbjct: 208 EANVPYIYTSGPEFIEIYVGQGAKRIRQLFSHARSVAPSIVFIDEIDAIGGKRSSSASNG 267

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
               + D  + +         N     +I AT R+  L + L    RF   + +   ++ 
Sbjct: 268 AGQKEHDQTLNQLLVEMDGFSNTVHIMVIGATNRIDTLDSALLRPGRFDRIVYVPLPDVN 327

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             K I++   K     +    A +I   SR TP  +G  L  + +   +A     +    
Sbjct: 328 GRKKILEIYIKKIKSNL---NANDIERMSRLTPGFSGADLENLVNETILATRNKKSLVTI 384

Query: 247 DAALLRLAIDKMGFDQLDLR 266
           +          MG ++  L+
Sbjct: 385 NELFEARDKVSMGPERKSLK 404


>gi|323344884|ref|ZP_08085108.1| ATP-dependent metalloprotease FtsH [Prevotella oralis ATCC 33269]
 gi|323094154|gb|EFZ36731.1| ATP-dependent metalloprotease FtsH [Prevotella oralis ATCC 33269]
          Length = 678

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 66/284 (23%), Positives = 114/284 (40%), Gaps = 33/284 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ  A   ++  +E  K          +     L VGPPG GKT LA+ VA E 
Sbjct: 195 TFKDVAGQAGAKQEVQEIVEFLKNPKKYTELGGKIPKGALLVGPPGTGKTLLAKAVAGEA 254

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM- 129
           GV F S SG       V   A  +  +    +++   ++FIDEI  +     +   P+M 
Sbjct: 255 GVPFFSMSGSDFVEMFVGVGASRVRDVFHQAKEKAPCIIFIDEIDAVGRARSKN--PSMG 312

Query: 130 ----EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183
                +  L+ ++ E     +     S   ++AAT R  +L   L    RF   I ++  
Sbjct: 313 GNDERENTLNALLTEMDGFGTN----SGVIVLAATNRADMLDKALLRAGRFDRQINVDLP 368

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           ++++ K I Q    +    V  + + +I   +R TP  +G  +  V + A +  A+  ++
Sbjct: 369 DLQERKEIFQ----VHLKPVKTDNSLDIDFLARQTPGFSGADIANVCNEAALIAARHDSK 424

Query: 244 EIADAA-LLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETIS 286
            ++    L  +     G ++          R       G  TIS
Sbjct: 425 TVSKQDFLDAVDRIIGGLEKKTKVMTATEKRTIAIHEAGHATIS 468


>gi|288918923|ref|ZP_06413266.1| DNA polymerase III, subunits gamma and tau [Frankia sp. EUN1f]
 gi|288349675|gb|EFC83909.1| DNA polymerase III, subunits gamma and tau [Frankia sp. EUN1f]
          Length = 949

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/236 (17%), Positives = 74/236 (31%), Gaps = 23/236 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A  +  RP T  +  GQ      L   + + +     L H  LF GP G GKT+ A+++A
Sbjct: 4   ALYNRYRPATFGQVVGQEHVTDALGHALRSGR-----LHHAYLFSGPRGCGKTSSARILA 58

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAM 129
             L         P      D    +      DV  ID      +     L       PA 
Sbjct: 59  ASLNCEK--GPTPEPCGVCDQCVSIRTGSSMDVTEIDAASHGLVDDARDLRERAFFAPAS 116

Query: 130 EDFQLDLMVGE--------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
             F++ ++               + V+        + ATT    +   ++ R        
Sbjct: 117 ARFKVFVVDEAHMVTAAAFNALLKVVEEPPPYLKFVFATTEPDKVIATIRSR-THHYAFR 175

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
                 L+  ++   +  G+ V       +     G+ R +  +L ++   A    
Sbjct: 176 LVPPGVLRGHLESICEQEGVVVDPAVFPLVVRAGAGSVRDSLSVLDQLLAGAGEGG 231


>gi|256370922|ref|YP_003108746.1| DNA polymerase III, subunits gamma and tau [Acidimicrobium
           ferrooxidans DSM 10331]
 gi|256007506|gb|ACU53073.1| DNA polymerase III, subunits gamma and tau [Acidimicrobium
           ferrooxidans DSM 10331]
          Length = 635

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/243 (18%), Positives = 79/243 (32%), Gaps = 18/243 (7%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
              RPR   E  GQ      L+  +    A        LF GP G GKT+ A+++A  L 
Sbjct: 10  RRFRPRRFGEVRGQERVTETLRRAV----AEGHVSHAYLFSGPRGTGKTSTARILAMALN 65

Query: 80  VN----------FRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYP 127
                         S    V   + D+  L          + +I +    + +    +Y 
Sbjct: 66  CEAPVDGEPCLACASCEAVVRGSSADVEELDAASNSGVDSIRWITQTVAAAPVGRWRVYI 125

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
             E   L          ++++   +    I ATT    +   ++ R          +   
Sbjct: 126 VDEVHMLS-QAASNALLKTLEEPPAHVVFILATTNPAKVLATVRSRTQ-HFAFRLLDDAS 183

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           +  +V    +  G +++DEA   +  R  G+ R    +L +V     V +          
Sbjct: 184 VDALVAEVLEALGASLSDEALAYVRRRGGGSARDTLSVLEQVLALGGVVNDAADGAVALA 243

Query: 248 AAL 250
            A+
Sbjct: 244 QAI 246


>gi|289209016|ref|YP_003461082.1| DNA polymerase III subunits gamma/tau [Thioalkalivibrio sp. K90mix]
 gi|288944647|gb|ADC72346.1| DNA polymerase III, subunits gamma and tau [Thioalkalivibrio sp.
           K90mix]
          Length = 587

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 80/227 (35%), Gaps = 27/227 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP   E+  GQ      L     A     + L H  LF G  G+GKTT+A+++AR L   
Sbjct: 11  RPGRFEDLVGQPHVVRAL-----ANALSGDRLHHAYLFAGTRGVGKTTIARILARCLNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILY------PAMEDFQ 133
              T+ P     G+  + +   E R  D++ +D   R  +     L       P    F+
Sbjct: 66  TGITATP----CGECRSCVEIAEGRHLDLIEVDAASRTRVDDTRELLDNVSYAPTAGRFK 121

Query: 134 LDLMVGE--------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           + L+               ++++        + ATT    L   +  R  +   L     
Sbjct: 122 VYLIDEVHMLSEKSFNALLKTLEEPPDHVKFLLATTDPQKLPVTVLSRC-LQFNLKPMPP 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
             +   + R  +  GL     A   +   + G+ R A  L  +   +
Sbjct: 181 ALIAEHLTRILEAEGLQAEPGALLRLGEAAEGSMRDALSLTDQAIAY 227


>gi|327329237|gb|EGE70997.1| cell division protein FtsH [Propionibacterium acnes HL103PA1]
          Length = 717

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 64/278 (23%), Positives = 97/278 (34%), Gaps = 30/278 (10%)

Query: 24  PR-TLEEFTGQVEACSNLKVFIE-----AAKARAEA--LDHVLFVGPPGLGKTTLAQVVA 75
           P+ T  +  G  EA   L+   E     A   R  A     VL  GPPG GKT LA+ VA
Sbjct: 162 PKSTFADVAGCQEAIDELQEIREFLAEPAKFQRVGAKIPKGVLLYGPPGTGKTLLARAVA 221

Query: 76  RELGVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
            E GV F S SG            ++  DL           ++FIDEI  +       + 
Sbjct: 222 GEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKEAAP-AIIFIDEIDAVGRHRGAGMG 280

Query: 127 PAMEDFQLD----LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRL 180
              ++ +      L+  +G   R   I       IAAT R  +L   L    RF   + +
Sbjct: 281 GGHDEREQTLNQLLVEMDGFDVRGGVIL------IAATNRPDVLDPALLRPGRFDRQVAV 334

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
              +++    I++  A    +A   + A         T      +L         A+   
Sbjct: 335 EAPDLDGRLKILKVHAHGKPMADDVDLASIARRTPGMTGADLANVLNEAALLTARANLPV 394

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
           I     D A+ R+        +L   +  ++     GG
Sbjct: 395 IGNAELDEAIDRVIAGPQKKTRLMNEHERLVTAYHEGG 432


>gi|153951826|ref|YP_001397740.1| DNA polymerase III subunits gamma and tau [Campylobacter jejuni
           subsp. doylei 269.97]
 gi|152939272|gb|ABS44013.1| DNA polymerase III, gamma/tau subunits [Campylobacter jejuni subsp.
           doylei 269.97]
          Length = 509

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 51/235 (21%), Positives = 86/235 (36%), Gaps = 27/235 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     RP+T +E  GQ     +LK  +         L H  LF G  G GKT+ A++ +
Sbjct: 4   ALAIKYRPKTFDELIGQKTVSVSLKYAL-----NHNRLAHAYLFSGLRGSGKTSSARIFS 58

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHR-----LSIIVEEILY-P 127
           R L        GP     G     +  LE +  D++ +D         +  ++E+  Y P
Sbjct: 59  RALVCE----QGPSDTPCGTCKHCIAALEGKHIDIIEMDAASNRGLEDIQALIEQTKYTP 114

Query: 128 AMEDFQLDLMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +M  F++ ++               ++++   S    I ATT    L   +  R      
Sbjct: 115 SMARFKIFIIDEVHMLTPQAANALLKTLEEPPSYVKFILATTDPLKLPATVLSRTQHFRF 174

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
               + E L   ++       +   +EA   IA    G+ R    LL +   F +
Sbjct: 175 KQIPQSEIL-NHLKEILHKENVKFEEEALKFIARSGNGSLRDTLTLLDQAIIFCQ 228


>gi|154175283|ref|YP_001408570.1| DNA polymerase III subunits gamma and tau [Campylobacter curvus
           525.92]
 gi|112803916|gb|EAU01260.1| protein EbsC [Campylobacter curvus 525.92]
          Length = 553

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 69/213 (32%), Gaps = 38/213 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP+  +E  GQ     +L   ++  +         LF G  G GKT+ A++ ++
Sbjct: 3   ALALKYRPKNFDELIGQEAVSKSLTHALDEGRISHAY----LFSGLRGSGKTSSARIFSK 58

Query: 77  E------------------------LGVNFRSTSGPVIAKAGDLAALLTNLEDRD----- 107
                                      ++          K  D+  L+   + +      
Sbjct: 59  ALVCEKGPTSRPCETCPQCIMANESRHMDIIEMDAASHRKIDDIRELIEQTKYKPAMARY 118

Query: 108 -VLFIDEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164
            +  IDE+H L+      L   +E+    +  ++      +     LSR T      ++G
Sbjct: 119 KIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATVLSR-TQHFRFKQIG 177

Query: 165 LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
             +      F +      YE E L  I+ R  +
Sbjct: 178 KNSIIKHLEFILSKEGISYEREAL-EILARSGR 209


>gi|11499681|ref|NP_070923.1| cell division protein CDC48 [Archaeoglobus fulgidus DSM 4304]
 gi|2648442|gb|AAB89157.1| cell division control protein 48, AAA family (cdc48-2)
           [Archaeoglobus fulgidus DSM 4304]
          Length = 811

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 54/245 (22%), Positives = 91/245 (37%), Gaps = 19/245 (7%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLED 105
           E    VL  GPPG GKT +A+ VA E+G +F + +GP I           L  +    ++
Sbjct: 229 EPPKGVLLYGPPGTGKTLIAKAVANEIGASFFTINGPEIMSKFYGESEQRLREIFEEAKE 288

Query: 106 R--DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
               ++FIDEI  ++   EE+           L+               +  +I AT R+
Sbjct: 289 NAPSIIFIDEIDSIAPKREEVTGEVERRVVAQLLT-----LMDGLEERGQVIVIGATNRI 343

Query: 164 GLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRI 221
             +   L+   RF   I +   + E    I Q   +   L         +    R   ++
Sbjct: 344 DAVDPALRRPGRFDREIEIGVPDREGRYEIFQIHTRNMPLEAKYSREFVLDAIERFKRQV 403

Query: 222 AGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFG---GG 278
               L +  DF       + T E    A+  L   ++  D+L++     + R+      G
Sbjct: 404 DDPELIKNLDFLYDEIKNSETEEEVKGAVKNLLPQEV-IDELEVEITKAMLRSLADQTHG 462

Query: 279 PVGIE 283
            VG +
Sbjct: 463 FVGAD 467



 Score = 43.5 bits (101), Expect = 0.046,   Method: Composition-based stats.
 Identities = 50/267 (18%), Positives = 87/267 (32%), Gaps = 37/267 (13%)

Query: 16  DADISLLR------PR-TLEEFTGQVEACSNLKVFIEAA-----------KARAEALDHV 57
           + + S +R      P+ T  +  G  +     +  IEA            K   +    V
Sbjct: 515 EIEPSAMREVFVEIPKVTWNDVGGLEDVK---REIIEAVEWPLKYPEKFKKFGIKPPKGV 571

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VL 109
           L  GPPG GKT +A+ VA E   NF S  G  I           +  +          ++
Sbjct: 572 LLYGPPGTGKTLIAKAVANESEANFISIKGGQILSKWLGESEKAVRKIFRKARQVAPCII 631

Query: 110 FIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           F DEI  ++ +          +  L+ ++ E          L    +I AT R  +L   
Sbjct: 632 FFDEIDAIAQMRGIDEGSRAVERVLNQLLTE----MDGLEELHGVVVIGATNRPDILDPA 687

Query: 170 LQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
           L    RF   + +   + +    I +   +   L+   +      +           + R
Sbjct: 688 LLRPGRFDRMVYVRPPDKKSRLAIFKIHTRDMPLSEDVDLEELADLTEGYVGADIEAICR 747

Query: 228 RVRDFA--EVAHAKTITREIADAALLR 252
                A  E  +A+ +       AL +
Sbjct: 748 EAVMLAIRENINAEKVEMRHFLEALKK 774


>gi|328955416|ref|YP_004372749.1| ATP-dependent metalloprotease FtsH [Coriobacterium glomerans PW2]
 gi|328455740|gb|AEB06934.1| ATP-dependent metalloprotease FtsH [Coriobacterium glomerans PW2]
          Length = 651

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 51/187 (27%), Positives = 75/187 (40%), Gaps = 23/187 (12%)

Query: 26  TLEEFTGQVEACSNLKV---FIEAAKARAEA----LDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ EA   LK    F+E  K   E         L VGPPG GKT +A+ VA E 
Sbjct: 179 TFKDVAGQEEAKEALKEVVDFLENPKRYEEIGAKLPRGALLVGPPGTGKTLMAKAVAGEA 238

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG           A  +  L     ++   ++FIDEI  +    +       +
Sbjct: 239 GVPFFSISGSEFVEMFVGRGAAKVRDLFKQANEKAPCIVFIDEIDTIGKRRDGGGISGND 298

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E     + K       +IAAT R   L   L    RF   I +   ++ 
Sbjct: 299 EREQTLNQLLTEMDGFDNHKG----IVVIAATNRPDTLDPALLRPGRFDRRIPVELPDLA 354

Query: 187 DLKTIVQ 193
               I++
Sbjct: 355 GRNAILK 361


>gi|260889841|ref|ZP_05901104.1| ATP-dependent protease La [Leptotrichia hofstadii F0254]
 gi|260860447|gb|EEX74947.1| ATP-dependent protease La [Leptotrichia hofstadii F0254]
          Length = 795

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 48/210 (22%), Positives = 78/210 (37%), Gaps = 37/210 (17%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEAL--DHVLFVGPPGLGKTTLAQVVARELGVNFRST 85
           E+  G  E    +  F+ A K     L    +  VGPPG+GKT+LA  VAR +   F   
Sbjct: 323 EDHYGLEEVKERILEFL-AIKKLNNTLKGSIICLVGPPGVGKTSLAHSVARSMNRKFTRI 381

Query: 86  SGPVIAKAGDLA------------ALLTNLED----RDVLFIDEIHRL--------SIIV 121
           S   +    ++              ++ +L+       V+  DEI ++        +  +
Sbjct: 382 SLGGVRDEAEIRGHRRTYVGAMPGRIINSLKQVGVNNPVMLFDEIDKMASDFRGDPASAM 441

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
            E+L PA  +   D  +           +LS    I     +G +  PL+DR  I    +
Sbjct: 442 LEVLDPAQNNSFEDHYI-------DHTFDLSNVFFICTANDLGGIPGPLRDRMEIISIES 494

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEI 211
           + E E L  I +R   L      +    E 
Sbjct: 495 YTEFEKL-NIAKRY--LIPQTQEENGLKEF 521


>gi|159025964|emb|CAO88754.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 614

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 86/227 (37%), Gaps = 27/227 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALD--------HVLFVGPPGLGKTTLAQVVARE 77
           +L++  G  E    LK  I     R + L          VL VGPPG GKT  A+ +A E
Sbjct: 92  SLKDVGGLTEVIKELKELIAIPLKRPDLLAKLGLEPTRGVLLVGPPGTGKTLTARALAEE 151

Query: 78  LGVNFRSTSGP-VIAK-----AGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
           LGVN+ +  GP VI+K        L  +          ++FIDEI  ++    +     +
Sbjct: 152 LGVNYIALVGPEVISKYYGEAEQKLRGIFEKASKNAPCIVFIDEIDSMAPDRSK-----V 206

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
           E      +V +               ++AAT R   L   L+   RF   +     + + 
Sbjct: 207 EGEVEKRLVAQLLGLMDGFAQSQGVIVLAATNRPDHLDPALRRPGRFDREVLFRVPDRKG 266

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
              I+Q    +   ++  + +  + + +       G  L+ V   A 
Sbjct: 267 RLEILQ----ILTRSMPLDESVSLDLIADNAVGFVGSDLKAVCQKAA 309



 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/160 (25%), Positives = 61/160 (38%), Gaps = 19/160 (11%)

Query: 28  EEFTGQVEACSNLKVFIEAA--------KARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +   G  +    L+  +E A        + +A+A   +L  GPPG GKT LA+ VA +  
Sbjct: 360 DNIGGLEQIKQTLQESVEGALLHPQLYTQTKAQAPKGILLWGPPGTGKTLLAKAVASQAR 419

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMED 131
            NF S +GP +      A    +  L          V+FIDEI  L+             
Sbjct: 420 ANFISINGPELLSKWVGASEQAVRELFAKARQAAPCVVFIDEIDTLAPARGRYSGD---S 476

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
              D +VG+  +        +   +I AT R   L   L 
Sbjct: 477 GVSDRVVGQILTELDGLQTAATILVIGATNRPDALDPALL 516


>gi|91774163|ref|YP_566855.1| replication factor C large subunit [Methanococcoides burtonii DSM
           6242]
 gi|121686603|sp|Q12TX1|RFCL_METBU RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|91713178|gb|ABE53105.1| Replication factor C large subunit [Methanococcoides burtonii DSM
           6242]
          Length = 497

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/323 (13%), Positives = 102/323 (31%), Gaps = 35/323 (10%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
            +   RP++L +  G  ++  +++ + ++  +       ++  GP G+GKT+ A  +AR+
Sbjct: 7   WVEKYRPQSLTDIVGNKKSVVDMREWAQSWLSGTPEKRAIILHGPAGVGKTSAAHALARD 66

Query: 78  LGVNFR------STSGPVIAKAGDLAALLTNLEDRD---VLFIDEIHRLS----IIVEEI 124
           L             +  VI +    A+ +++L       ++ +DE   +           
Sbjct: 67  LDWETIELNASDQRTAGVIERVAGSASKMSSLTGTTAKRLIILDEADNIHGNADRGGARA 126

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           +   +++    +++             S    +   +  G    P   R  +  ++    
Sbjct: 127 IGGIIKNTDQPIVLIANDLYGLTPSVRSLCIELKFNSVQGRSMIPAMKRICVEEKIMC-G 185

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +  L+ + +        A+ D  A            IA           +V   K     
Sbjct: 186 VGVLEKLAESAGGDLRSAIKDLQAVATGRDEIHIEDIATSERDTKESIFKVLG-KIFKST 244

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
               AL        G D+     +  I             +           EDLI  Y 
Sbjct: 245 DPKKALEAT----YGLDETPENLIHWIDE----------NLPLQYGTEEGTQEDLITGY- 289

Query: 305 IQQGFIQRTPR--GRLLMPIAWQ 325
               ++ +  R  GR+    +++
Sbjct: 290 ---EYLAKADRYLGRVRKRQSYR 309


>gi|15679634|ref|NP_276751.1| cell division control protein Cdc48 [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|2622767|gb|AAB86112.1| cell division control protein Cdc48 [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 732

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 63/265 (23%), Positives = 97/265 (36%), Gaps = 35/265 (13%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
           T E+  G  E    ++  IE    R E            VL  GPPG GKT LA+ VA E
Sbjct: 203 TYEDIGGLKEEVKKVREMIEIPLKRPELFERLGITPPKGVLMHGPPGTGKTLLAKAVANE 262

Query: 78  LGVNFRSTSGPVIAKA--------GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
              +F + +GP I                         ++FIDEI  ++   E++     
Sbjct: 263 SDAHFIAINGPEIMSKYVGGSEERLREFFEEAEENAPSIIFIDEIDAIAPKREDVSGEVE 322

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                 L+            +  +  +I AT R   L   L+   RF   I +   + E+
Sbjct: 323 RRIVAQLLT-----LMDGLKSRGQVVVIGATNRPDALDPALRRPGRFDREIEIGVPDREE 377

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTP---------RIAGRLLRRVRDFAEVAHA 238
            K I+Q   +   LA  D    E+A  + G             A R+LRRV    E+   
Sbjct: 378 RKEILQIHTRGMPLA-DDVDLDELAEITHGFVGADLESLCKESAMRVLRRV--LPEIKAD 434

Query: 239 KTITREIADAALLRLAIDKMGFDQL 263
           + I +E+    ++  A  K    ++
Sbjct: 435 EEIPKEVLKKMVVTRADFKDALKEI 459



 Score = 47.0 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 39/184 (21%), Positives = 64/184 (34%), Gaps = 21/184 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIE--------AAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           + ++  G   A   L+  +E          K        +L  G PG GKT LA+ VA E
Sbjct: 475 SWDDIGGLEGAKQELREAVEWPLKYPDRFKKFGIRPPKGILLHGSPGTGKTLLAKAVANE 534

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM 129
              NF +  GP +           +  +          V+F DEI  ++ +         
Sbjct: 535 SQANFIAVKGPELLSKWVGESEKGVREVFRKARQTAPTVIFFDEIDSIASVR---SGSTA 591

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
           +      +V +  +       L    +IAAT R  +L   L    RF   +++   + E 
Sbjct: 592 DSGVTQRVVNQLLTEIDGLEELQDVAVIAATNRPDILDPALLRPGRFDRHVKVEDPDKEA 651

Query: 188 LKTI 191
              I
Sbjct: 652 RLAI 655


>gi|66357178|ref|XP_625767.1| CDC48 like AAA ATpase [Cryptosporidium parvum Iowa II]
 gi|46226983|gb|EAK87949.1| CDC48 like AAA ATpase [Cryptosporidium parvum Iowa II]
          Length = 891

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 49/219 (22%), Positives = 80/219 (36%), Gaps = 31/219 (14%)

Query: 3   DREGLLSRNV---SQEDADISLLR------PRT-LEEFTGQVEACSNLKVFIEAAKARAE 52
           D+  LLS +    S ++   S LR      P+T   +  G  E    LK  +E     +E
Sbjct: 530 DQFTLLSFDDIHNSVKNIKPSALRELAIEIPKTDWNDIGGYEEVKEQLKECVEWPLIHSE 589

Query: 53  --------ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAA 98
                       VL  GPPG  KT +A+ VA E  +NF S  GP +           +  
Sbjct: 590 LFEYMKIKPPSGVLLYGPPGCSKTLMAKAVATESKMNFISVKGPELFSKWVGESEKSIRE 649

Query: 99  LLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTL 156
           +          ++F DEI  + +  E +   +        ++ +  +         +  +
Sbjct: 650 IFRKARQNSPCIIFFDEIDAIGVNRESM---SNTSDVSTRVLSQMLNEMDGITTNKQVIV 706

Query: 157 IAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQ 193
           I AT R  LL + L    R    I +   + +  K I+ 
Sbjct: 707 IGATNRPDLLDSALLRPGRLDRIIYIGLPDSKARKKILN 745



 Score = 37.7 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 7/90 (7%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA-----KAGDLAALLTNLEDRDVLFI 111
           +L  GPPG GKT +A+ +A E+ +         +         D + +  N +D D  F 
Sbjct: 314 ILLYGPPGTGKTLIARSIAEEIELITTFKQDSDLELSVDFIVIDGSNISNNTDDEDNHFF 373

Query: 112 DEIHRL--SIIVEEILYPAMEDFQLDLMVG 139
           + I ++  +   +E +Y  +   ++DL+ G
Sbjct: 374 NSIQKVKDNSKKDEFIYTILFIDEIDLICG 403


>gi|315094259|gb|EFT66235.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL060PA1]
          Length = 717

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 64/278 (23%), Positives = 97/278 (34%), Gaps = 30/278 (10%)

Query: 24  PR-TLEEFTGQVEACSNLKVFIE-----AAKARAEA--LDHVLFVGPPGLGKTTLAQVVA 75
           P+ T  +  G  EA   L+   E     A   R  A     VL  GPPG GKT LA+ VA
Sbjct: 162 PKSTFADVAGCQEAIDELQEIREFLAEPAKFQRVGAKIPKGVLLYGPPGTGKTLLARAVA 221

Query: 76  RELGVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
            E GV F S SG            ++  DL           ++FIDEI  +       + 
Sbjct: 222 GEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKEAAP-AIIFIDEIDAVGRHRGAGMG 280

Query: 127 PAMEDFQLD----LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRL 180
              ++ +      L+  +G   R   I       IAAT R  +L   L    RF   + +
Sbjct: 281 GGHDEREQTLNQLLVEMDGFDVRGGVIL------IAATNRPDVLDPALLRPGRFDRQVAV 334

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
              +++    I++  A    +A   + A         T      +L         A+   
Sbjct: 335 EAPDLDGRLKILKVHAHGKPMADDVDLASIARRTPGMTGADLANVLNEAALLTARANLPV 394

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
           I     D A+ R+        +L   +  ++     GG
Sbjct: 395 IGNAELDEAIDRVIAGPQKKTRLMNEHERLVTAYHEGG 432


>gi|314965443|gb|EFT09542.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL082PA2]
          Length = 717

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 64/278 (23%), Positives = 97/278 (34%), Gaps = 30/278 (10%)

Query: 24  PR-TLEEFTGQVEACSNLKVFIE-----AAKARAEA--LDHVLFVGPPGLGKTTLAQVVA 75
           P+ T  +  G  EA   L+   E     A   R  A     VL  GPPG GKT LA+ VA
Sbjct: 162 PKSTFADVAGCQEAIDELQEIREFLAEPAKFQRVGAKIPKGVLLYGPPGTGKTLLARAVA 221

Query: 76  RELGVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
            E GV F S SG            ++  DL           ++FIDEI  +       + 
Sbjct: 222 GEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKEAAP-AIIFIDEIDAVGRHRGAGMG 280

Query: 127 PAMEDFQLD----LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRL 180
              ++ +      L+  +G   R   I       IAAT R  +L   L    RF   + +
Sbjct: 281 GGHDEREQTLNQLLVEMDGFDVRGGVIL------IAATNRPDVLDPALLRPGRFDRQVAV 334

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
              +++    I++  A    +A   + A         T      +L         A+   
Sbjct: 335 EAPDLDGRLKILKVHAHGKPMADDVDLASIARRTPGMTGADLANVLNEAALLTARANLPV 394

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
           I     D A+ R+        +L   +  ++     GG
Sbjct: 395 IGNAELDEAIDRVIAGPQKKTRLMNEHERLVTAYHEGG 432


>gi|320106404|ref|YP_004181994.1| ATP-dependent protease La [Terriglobus saanensis SP1PR4]
 gi|319924925|gb|ADV82000.1| ATP-dependent protease La [Terriglobus saanensis SP1PR4]
          Length = 818

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 61/298 (20%), Positives = 105/298 (35%), Gaps = 57/298 (19%)

Query: 55  DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA------------ALLTN 102
             + FVGPPG+GKT+L + +AR LG  F   S   +    ++              ++ N
Sbjct: 367 PILCFVGPPGVGKTSLGKSIARALGRKFSRISLGGMHDEAEIRGHRRTYIGAMPGQIIQN 426

Query: 103 LED----RDVLFIDEIHRLSI--------IVEEILYPAMEDFQLDLMVGEGPSARSVKIN 150
           L+       V  +DEI +L           + E L PA      D  + +         +
Sbjct: 427 LKRVETNDPVFMLDEIDKLGRDFRGDPASALLETLDPAQNGTFRDHYLDQ-------PFD 479

Query: 151 LSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACE 210
           LS+   I    ++  +  PL DR  I I L  Y  E+  +I ++      +      A E
Sbjct: 480 LSKVLFICTANQLDPIPAPLLDRMEI-IELTGYTEEEKVSIAEKYLVPRQVKENGIEAVE 538

Query: 211 IAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTM 270
                    R A  ++   R +   A  + + + I      +      G  +  +    +
Sbjct: 539 GGEAKIEFSREALGIV--ARHYTREAGVRKLEQLIGTICRKQARRIAEGKTEKLVVTDAV 596

Query: 271 IARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
           I    GG  V ++T             ++ E          RT R  + + +AW  +G
Sbjct: 597 IQEFLGGYKVRVDT-------------EIAE----------RTKRAGVAVGLAWTPVG 631


>gi|148642702|ref|YP_001273215.1| cell division protein CDC48 [Methanobrevibacter smithii ATCC 35061]
 gi|148551719|gb|ABQ86847.1| cell division control protein Cdc48, AAA+ ATPase family
           [Methanobrevibacter smithii ATCC 35061]
          Length = 730

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 46/195 (23%), Positives = 74/195 (37%), Gaps = 23/195 (11%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALD--------HVLFVGPPGLGKTTLAQVVARELG 79
           E+  G  +    ++  IE    R E  D         VL  GPPG GKT LA+ VA E  
Sbjct: 203 EDIGGLKDEVKKVREMIEIPLKRPELFDKLGIAPPKGVLMHGPPGTGKTLLAKAVASESD 262

Query: 80  VNFRSTSGPVIAKA------GDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAMED 131
            +F + +GP I          +L       E+    ++FIDE+  ++   E+        
Sbjct: 263 AHFIAINGPEIMSKYVGGSEENLREYFEEAEENAPSIIFIDELDAIAPKREDTQGETERR 322

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
               L+            +  +  +I AT R   L   L+   RF   I +   + E+ +
Sbjct: 323 TVAQLLT-----LMDGLKSRGQVVVIGATNRPDSLDQALRRPGRFDREIEIGVPDSEERE 377

Query: 190 TIVQRGAKLTGLAVT 204
            I++   +   LA  
Sbjct: 378 EILEIHTRNMPLAED 392



 Score = 45.5 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 40/184 (21%), Positives = 64/184 (34%), Gaps = 21/184 (11%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARELG 79
           ++  G  +    LK  +E      E             L  G PG GKT LA+ VA E  
Sbjct: 475 DDVGGLDDVKQELKEAVEWPLKHPEKFEKFGVKPPKGTLLYGVPGTGKTLLAKAVASESE 534

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAMED 131
            NF S  GP +           +  +    +     V+F DEI  ++           + 
Sbjct: 535 ANFISIKGPELLSKWVGESEQGVREVFRKAKQTAPTVIFFDEIDSIASTRSAN---DSDS 591

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
                +V +  +       L    +IAAT R  +L   L    RF   I+++    +   
Sbjct: 592 GVTKRVVNQLLTEMDGLEELEDVAIIAATNRPDILDAGLMRPGRFDRHIKVDLPNEDARL 651

Query: 190 TIVQ 193
           +I +
Sbjct: 652 SIFK 655


>gi|227502437|ref|ZP_03932486.1| possible DNA polymerase III, gamma subunit and tau subunit
           [Corynebacterium accolens ATCC 49725]
 gi|227076806|gb|EEI14769.1| possible DNA polymerase III, gamma subunit and tau subunit
           [Corynebacterium accolens ATCC 49725]
          Length = 904

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 76/220 (34%), Gaps = 27/220 (12%)

Query: 32  GQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA 91
           GQ +  + L   ++A +         LF GP G GKT+ A+++AR L        GP   
Sbjct: 2   GQEQVTTPLSAALDAGRINHAY----LFSGPRGCGKTSSARIMARSLNCEH----GPTST 53

Query: 92  KAGDLAALLTNLEDR----DVLFIDEIHRLSIIVEEILY------PAMEDFQLDLM---- 137
             G   + ++         DV  +D      +     L       PA   +++ ++    
Sbjct: 54  PCGKCDSCVSLAPGGPGNLDVTELDAASHNGVEDMRELRDRAYYAPAESRYRIFIIDEAH 113

Query: 138 ----VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
                G     + V+        I ATT    +   ++ R              +K ++Q
Sbjct: 114 MISPSGANALLKVVEEPPEHVIFIFATTEPEKIIGTIRSR-THHYPFRLLTPPAMKGLLQ 172

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
           R     G+ V D     +     G+PR    LL ++   A
Sbjct: 173 RTVASEGVQVEDAVYPMVIEAGGGSPRDTLSLLDQLLAGA 212


>gi|193786407|dbj|BAG51690.1| unnamed protein product [Homo sapiens]
          Length = 763

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 73/192 (38%), Gaps = 33/192 (17%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI  ++ R      +L F GPPG+GKT++A+ +AR L   +   S
Sbjct: 293 EDHYGMEDVKKRVLEFIAVSQLRGSTQGKILCFYGPPGVGKTSIARSIARALNREYFRFS 352

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ ++    +        
Sbjct: 353 VGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLILIDEVDKIGRGYQGDPSSALL 412

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V ++LS+   I        +  PL+DR  + I ++ 
Sbjct: 413 ELLDPEQNANFLD-------HYLDVPVDLSKVLFICTANVTDTIPEPLRDRMEM-INVSG 464

Query: 183 YEIEDLKTIVQR 194
           Y  ++   I +R
Sbjct: 465 YVAQEKLAIAER 476


>gi|70606628|ref|YP_255498.1| ATP-dependent Zn protease [Sulfolobus acidocaldarius DSM 639]
 gi|68567276|gb|AAY80205.1| ATP-dependent Zn protease [Sulfolobus acidocaldarius DSM 639]
          Length = 747

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 71/192 (36%), Gaps = 15/192 (7%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLED 105
           +    +L  GPPG GKT LA+ +A E+G  F + +GP I           +  +    E+
Sbjct: 211 DPPKGILLYGPPGTGKTLLARALANEIGAYFITVNGPEIMSKFYGESEQRIREIFKEAEE 270

Query: 106 R--DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
               ++FIDEI  ++   E++     +     L+               R  +I AT R 
Sbjct: 271 NAPSIIFIDEIDAIAPKREDVTGEVEKRVVAQLLT-----LMDGIKGRGRVIVIGATNRP 325

Query: 164 GLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRI 221
             +   L+   RF   I +   + +  K I+Q   +   +    +      M    T   
Sbjct: 326 DAIDPALRRPGRFDREIEIRPPDTKGRKDILQVHTRNMPITDDVDLDKLAEMTYGYTGAD 385

Query: 222 AGRLLRRVRDFA 233
              L +    +A
Sbjct: 386 LAALAKEAAIYA 397



 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 43/189 (22%), Positives = 71/189 (37%), Gaps = 23/189 (12%)

Query: 24  PR-TLEEFTGQVEACSNLKVFIE--------AAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           P+    +  G       L+  +E          K+       +L  GPPG GKT LA+ V
Sbjct: 449 PKVNWNDIGGLDNVKQQLREAVEWPLRFPELFTKSGVTPPKGILLFGPPGTGKTMLAKAV 508

Query: 75  ARELGVNFRSTSGPVI------AKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILY 126
           A E G NF +  GP I           +  +          V+F DEI  ++ I      
Sbjct: 509 ATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPTVIFFDEIDSIAPIR----G 564

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
            + +    + +V +  +     + L++  +IAAT R  +L   L    RF   I +   +
Sbjct: 565 LSTDSGVTERIVNQLLAEMDGIVPLNKVVIIAATNRPDILDPALLRPGRFDRLIYVPPPD 624

Query: 185 IEDLKTIVQ 193
                 I++
Sbjct: 625 KTARFEILK 633


>gi|150019592|ref|YP_001311846.1| ATP-dependent metalloprotease FtsH [Clostridium beijerinckii NCIMB
           8052]
 gi|149906057|gb|ABR36890.1| ATP-dependent metalloprotease FtsH [Clostridium beijerinckii NCIMB
           8052]
          Length = 710

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 62/256 (24%), Positives = 99/256 (38%), Gaps = 22/256 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ EA  +LK  I+   A        A+    VL VGPPG GKT +A+ VA E 
Sbjct: 169 TFDDVAGQEEAKESLKEVIDFLNAPAKYTEIGAKLPKGVLLVGPPGTGKTLIAKAVAGEA 228

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  L  +   +   ++FIDEI  +    +  +    E
Sbjct: 229 RVPFFSLSGSSFVEMFVGVGASRVRELFKDAVAKAPCIIFIDEIDAIGKSRDNQMQSNDE 288

Query: 131 -DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            +  L+ ++ E     S K       L+ AT R  +L   L    RF   + ++  + + 
Sbjct: 289 REQTLNQLLSEMDGFDSSKG----VVLLGATNRPEILDKALLRPGRFDRRVIVDRPDFKG 344

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            + I+   AK   L    + A                ++      A     KT+ +E   
Sbjct: 345 REAILHVHAKNVMLGPDVDLAEIAKSTPGAVGADLANIINEGALRAVRRRRKTVLQEDLR 404

Query: 248 AALLRLAIDKMGFDQL 263
            A+  +   K   D++
Sbjct: 405 EAVEVIIAGKEKKDRI 420


>gi|294660559|ref|NP_853383.2| DNA polymerase III subunits gamma and tau [Mycoplasma gallisepticum
           str. R(low)]
 gi|284812222|gb|AAP56951.2| DNA polymerase III subunits gamma and tau [Mycoplasma gallisepticum
           str. R(low)]
 gi|284930879|gb|ADC30818.1| DNA polymerase III subunits gamma and tau [Mycoplasma gallisepticum
           str. R(high)]
          Length = 601

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 88/222 (39%), Gaps = 21/222 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP  L    GQ    +   + ++A+ A  +     +F G  G+GKT++++++A+      
Sbjct: 9   RPTNLSSIIGQSHITN---ILLKAS-AHDQLATAYIFQGSRGIGKTSISKILAKAYNCLN 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
           +   G V  +      L+   + +D+  +D      +  +  I++ I Y  M   +   +
Sbjct: 65  K-KDGDVCNQCSAC-ELINENKSQDIYELDAATNNGVDEIRKIIDAINYAPMNLSKKVYI 122

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT    +   +  R          + +DL
Sbjct: 123 LDEAHMLSNGAWNALLKTLEEPPKHVVFIFATTEFHKIPLTVVSRCQ-SFNFKKLDKDDL 181

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
             +++   K   + + D A  +IA  + G+ R    +L+++ 
Sbjct: 182 VDVLKNVVKQEKIKIEDSAIDKIADFASGSARDGLSILQQLA 223


>gi|195435672|ref|XP_002065803.1| GK20242 [Drosophila willistoni]
 gi|194161888|gb|EDW76789.1| GK20242 [Drosophila willistoni]
          Length = 1003

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 76/231 (32%), Gaps = 37/231 (16%)

Query: 32  GQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           G  +    +  FI  +  +      +L F GPPG+GKT++A+ +AR L   +   S   +
Sbjct: 522 GMEDIKKRILEFIAVSSLKGTTQGKILCFHGPPGVGKTSIARSIARALNREYFRFSVGGM 581

Query: 91  AKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE--------EILY 126
               ++                        +  ++ IDE+ ++    +        E+L 
Sbjct: 582 TDVAEIKGHRRTYVGAMPGKLIQCLKKTKTENPLVLIDEVDKIGKGYQGDPSSALLELLD 641

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           P      LD           V ++LSR   I     +  +  PL+DR  +     +   E
Sbjct: 642 PEQNANFLD-------HYLDVPVDLSRVLFICTANVIDTIPEPLRDRMELIEMSGYVAEE 694

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            +       A+   +            +   T      L+R     + V +
Sbjct: 695 KVA-----IARQYLIPQAMSDCGLTDEQLNITEDSLNMLIRSYCRESGVRN 740


>gi|148265280|ref|YP_001231986.1| ATP-dependent metalloprotease FtsH [Geobacter uraniireducens Rf4]
 gi|146398780|gb|ABQ27413.1| ATP-dependent metalloprotease FtsH [Geobacter uraniireducens Rf4]
          Length = 617

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 56/242 (23%), Positives = 92/242 (38%), Gaps = 43/242 (17%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAK-------ARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G   +   LK  ++  K          +    +L VGPPG GKT LA+ VA E 
Sbjct: 173 TFDDVAGMENSKLELKEMVDYLKDPKKFQKIGGKVPKGILLVGPPGTGKTLLARAVAGEA 232

Query: 79  GVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           GV F S S             ++  DL A         ++FIDE+  +            
Sbjct: 233 GVAFFSISASQFIEMFVGVGASRVRDLFANAKKAAP-SIIFIDELDAVGRSRGTGFGGGH 291

Query: 130 EDFQLDL------MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ-----DRFGIPI 178
           ++ +  L      M G  P    + I        AAT R  +L   L      DR  +  
Sbjct: 292 DEREQTLNQLLSEMDGFDPHEEVIVI--------AATNRPDVLDPALLRPGRFDRHVVIE 343

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           R ++ + E +  +  R  +L           ++A+ ++GTP + G  L  + + A +  A
Sbjct: 344 RPDWRDREQILKVHTRKIRLDQD-------IDLAVIAKGTPGMTGADLENLVNEAAIQAA 396

Query: 239 KT 240
           + 
Sbjct: 397 RE 398


>gi|300725894|ref|ZP_07059357.1| cell division protein FtsH [Prevotella bryantii B14]
 gi|299776831|gb|EFI73378.1| cell division protein FtsH [Prevotella bryantii B14]
          Length = 695

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 63/265 (23%), Positives = 107/265 (40%), Gaps = 33/265 (12%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ  A   ++  +E  K          +     L VGPPG GKT LA+ VA E 
Sbjct: 198 TFKDVAGQEGAKQEVEEIVEFLKNPKKYTDLGGKIPKGALLVGPPGTGKTLLAKAVAGEA 257

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM- 129
           GV F S SG       V   A  +  L    +++   ++FIDEI  +     +   PAM 
Sbjct: 258 GVPFFSMSGSDFVEMFVGVGASRVRDLFRQAKEKAPCIIFIDEIDAVGRARSKN--PAMG 315

Query: 130 ----EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183
                +  L+ ++ E     +     S   ++AAT RV +L   L    RF   I ++  
Sbjct: 316 GNDERENTLNALLTEMDGFGTN----SGVIILAATNRVDMLDKALLRAGRFDREIHVDLP 371

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           ++ + K I      +    +  + + +I + SR TP  +G  +  V + A +  A+   +
Sbjct: 372 DLNERKAI----FNVHLKPIKVDKSVDIDLLSRQTPGFSGADIANVCNEAALIAARHDHK 427

Query: 244 EIADAA-LLRLAIDKMGFDQLDLRY 267
            +     L  +     G ++     
Sbjct: 428 FVGKQDFLDAVDRIIGGLEKKTKVM 452


>gi|323473699|gb|ADX84305.1| AAA ATPase, CDC48 subfamily [Sulfolobus islandicus REY15A]
          Length = 606

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 53/251 (21%), Positives = 86/251 (34%), Gaps = 26/251 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIE--------AAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           T  +  G  +A   +K +IE        A K   +    +L  GPPG GKT + + +A E
Sbjct: 59  TWNDIGGYEDAKKEIKEYIELPLKNRDVAMKYGLKPPKGMLLFGPPGCGKTMMMRALANE 118

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
             +NF   +   I           L  L  N       +LF DEI  + +  E     ++
Sbjct: 119 SKLNFLYVNISDIMSKWYGESEARLRELFNNARKNSPCILFFDEIDTIGVKRESHTGDSV 178

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
               L LM+ E     S         ++ +T    +L   L    RF   I +     E 
Sbjct: 179 TPRLLSLMLSEIDGLHSEDG----VIVVGSTNVPQMLDKALLRAGRFDKLIYIGPPNKEA 234

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            K I+Q    +  +        +    +  T R +G  L  +   A    A     + AD
Sbjct: 235 RKQILQ----IHCIGKPLAEDVDFDKLAEITERYSGADLANLCQEAARKVASEAIEKGAD 290

Query: 248 AALLRLAIDKM 258
             +      ++
Sbjct: 291 RKITMADFIEL 301



 Score = 52.4 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 83/234 (35%), Gaps = 28/234 (11%)

Query: 35  EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI---- 90
           +    LKV           +  +L  GPPG+GKT +A+ +A+ L V   + SG  I    
Sbjct: 368 KLLEQLKV---------PPIRGILLYGPPGVGKTMMAKALAKTLNVKLIALSGAEIMYKG 418

Query: 91  --AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARS 146
                  +  +     +    ++ +DE+  ++       Y A     ++ ++ E    RS
Sbjct: 419 YEGAIAAIKEVFNRARENKPAIVLLDELDAIASKRNYKSY-ADSSKIVNQLLTEMDGIRS 477

Query: 147 VKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVT 204
               L    +I  T R+  +   L    RF   I +     E+   I+ +          
Sbjct: 478 ----LKEVVVIGTTNRLKAIDPALLRPGRFDKIIHMPLPNREERLDILMKYIGKEECEKV 533

Query: 205 DEA--ACEIAMRSRGTPRIAGR--LLRRVRDFAEVAHAKTITREIADAALLRLA 254
           D    A +    S        R   ++ ++        +T+T+E    AL ++ 
Sbjct: 534 DCEILAEQTEGYSGADLSALAREAKMKMLKSILRGESNRTLTKEDLIDALNKIH 587


>gi|255729190|ref|XP_002549520.1| activator 1 37 kDa subunit [Candida tropicalis MYA-3404]
 gi|240132589|gb|EER32146.1| activator 1 37 kDa subunit [Candida tropicalis MYA-3404]
          Length = 136

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 53/133 (39%), Gaps = 20/133 (15%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGK 67
           +S+ V+ E   +   RP  LE+  G  E    LK+ ++        + +++  G PG+GK
Sbjct: 1   MSKGVTLELPWVEKYRPHKLEDIVGNEETIERLKLVVQ-----DGNMPNMIISGLPGIGK 55

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAAL--LTN-------------LEDRDVLFID 112
           TT    +A EL  +       +   A D   +  + N                + ++ +D
Sbjct: 56  TTSIHCLAYELLGDKYYHQATLELNASDDRGIDVVRNKIKQFAQTKISLPPGRQKIIILD 115

Query: 113 EIHRLSIIVEEIL 125
           E   ++   ++ L
Sbjct: 116 EADSMTPGAQQAL 128


>gi|304409215|ref|ZP_07390836.1| DNA polymerase III, subunits gamma and tau [Shewanella baltica
           OS183]
 gi|307303218|ref|ZP_07582973.1| DNA polymerase III, subunits gamma and tau [Shewanella baltica
           BA175]
 gi|304353036|gb|EFM17433.1| DNA polymerase III, subunits gamma and tau [Shewanella baltica
           OS183]
 gi|306913578|gb|EFN44000.1| DNA polymerase III, subunits gamma and tau [Shewanella baltica
           BA175]
          Length = 1125

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 49/241 (20%), Positives = 75/241 (31%), Gaps = 55/241 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQV-------- 73
           RP T ++  GQ      L   +       + L H  LF G  G+GKT+LA++        
Sbjct: 11  RPATFDQMVGQSHVLHALTNALS-----QQRLHHAYLFTGTRGVGKTSLARLFAKGLNCE 65

Query: 74  ----------------VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRD------VLFI 111
                           +A+   V+          K  D   LL N++ R       V  I
Sbjct: 66  QGVTATPCGVCGSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPTRGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSRSSFNALLKTLEE------------------PPEHVKFLLATTDPQKLPVTVL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L      ++ T +             EA   +A  + G+ R A  L  +   
Sbjct: 168 SRC-LQFNLKSLTQGEIGTQLNHILTQEQFPFDAEALKLLAKAANGSMRDALSLTDQAIA 226

Query: 232 F 232
           F
Sbjct: 227 F 227


>gi|224437201|ref|ZP_03658182.1| DNA polymerase III subunits gamma and tau [Helicobacter cinaedi
           CCUG 18818]
          Length = 562

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 70/222 (31%), Gaps = 49/222 (22%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     RP +  +  GQ      L + +++     + + H  LF G  G GKT+ A++ A
Sbjct: 5   ALALKYRPASFSDLVGQNAISQTLSLALDS-----KHISHAYLFSGLRGSGKTSSARIFA 59

Query: 76  RELGVN------------------------FRSTSGPVIAKAGDLAALLTNLEDRD---- 107
           R L                                        D+  L+   + R     
Sbjct: 60  RALECESGPISTPCGSCASCVAALENRHIDIIEMDAASSRGIDDIKKLIEQTKYRPSFGR 119

Query: 108 --VLFIDEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLS-----RFTLIA 158
             +  IDE+H LS      L   +E+    +  ++      +     LS     RF  I 
Sbjct: 120 YKIFIIDEVHMLSKEAFNALLKTLEEPPEFVKFILATTDPLKLPATILSRTQHFRFKQIP 179

Query: 159 ATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
               V  +TN L            YE E L+ I + G+    
Sbjct: 180 HRLVVEHITNILNKEG------VSYEQEALEMIARSGSGSLR 215


>gi|170289821|ref|YP_001736637.1| AAA family ATPase, CDC48 subfamily protein [Candidatus Korarchaeum
           cryptofilum OPF8]
 gi|170173901|gb|ACB06954.1| AAA family ATPase, CDC48 subfamily [Candidatus Korarchaeum
           cryptofilum OPF8]
          Length = 742

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 51/247 (20%), Positives = 85/247 (34%), Gaps = 24/247 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDHV--------LFVGPPGLGKTTLAQVVARE 77
           T ++  G  +    L+  IE      +A   +        L  GPPG GKT +A+ VA E
Sbjct: 464 TWDDVGGLEDVKRELREVIELPLKNPDAFRRMGIDPPRGVLLYGPPGCGKTLIAKAVANE 523

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
              NF S  GP +           +  +          ++FIDEI  L           +
Sbjct: 524 SEANFISVKGPELLSKWVGESEKAVRMIFRKARQVTPAIVFIDEIDSLFPKRGVHADSGV 583

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            +  +  M+ E          L    +I AT R  L+   L    R    + +   + + 
Sbjct: 584 SERVVSQMLTEI----DGIHPLRDVVVIGATNRPDLIDPALLRPGRLERLVYVGPPDFQS 639

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA--EVAHAKTITREI 245
              I++   +   LA   +      M  R +      L+R     A  E  +A+ +    
Sbjct: 640 RYQILKVLTRKVPLAKDVDLRSIALMTERYSGADLAALVREAAMAALREDINAERVEPRH 699

Query: 246 ADAALLR 252
            + A+ R
Sbjct: 700 FEIAMSR 706



 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 57/233 (24%), Positives = 80/233 (34%), Gaps = 30/233 (12%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
           T E+  G  E    ++  +E      E   H        VL  GPPG GKT LA+ VA E
Sbjct: 191 TYEDIGGLREEIQRIREMVELPLRHPELFRHLGIDPPKGVLLYGPPGTGKTLLAKAVANE 250

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM 129
              +F S SGP I           L  +    E     ++FIDE+  ++    E+     
Sbjct: 251 SNAHFISISGPEIMSKYYGESEKRLREIFEEAEKNAPSIIFIDELDSIAPNRNEVTGEVE 310

Query: 130 ED---FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
                  L LM G       + I         AT R   +   L+   RF   I +   +
Sbjct: 311 RRVVAQLLALMDGLKGRGEVIVI--------GATNRPEAIDPALRRPGRFDREIEIGVPD 362

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            E  K I+    +   LA  D     +A  + G        L R    A +  
Sbjct: 363 REGRKEILLIHTRNMPLA-DDVDLDRLADITHGFVGADLAALVREAAMAALRR 414


>gi|255537631|ref|XP_002509882.1| ATP binding protein, putative [Ricinus communis]
 gi|223549781|gb|EEF51269.1| ATP binding protein, putative [Ricinus communis]
          Length = 796

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 49/276 (17%), Positives = 92/276 (33%), Gaps = 41/276 (14%)

Query: 10  RNVSQEDADISLLRPR---------TLEEFTGQVEACSNLKVFIEAAKARAEALDH---- 56
            +V  ++     +RP          T  +     E   +L+  +     R +        
Sbjct: 456 PDVPPDNEFEKRIRPEVIPANEINVTFADIGALDEIKESLQELVMLPLRRPDLFKGGLLK 515

Query: 57  ----VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLED- 105
               +L  GPPG GKT +A+ +A+E G +F + S   I          ++ AL T     
Sbjct: 516 PCRGILLFGPPGTGKTMMAKAIAKEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKV 575

Query: 106 -RDVLFIDEIH-----RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA 159
              ++F+DE+      R  +   E +     +F              +     R  ++AA
Sbjct: 576 SPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFM-------THWDGLLTKPSERILVLAA 628

Query: 160 TTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTP 219
           T R   L   +  RF   I +     E+ + I +    L      +E   +    +  T 
Sbjct: 629 TNRPFDLDEAIIRRFERRILVGLPSPENREKIFK---TLLAKEKVEEGL-QFKELATMTE 684

Query: 220 RIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255
              G  L+ +   A     + + ++     L +   
Sbjct: 685 GFTGSDLKNLCTTAAYRPVRELIKQERLKDLEKKQR 720


>gi|193215173|ref|YP_001996372.1| ATP-dependent metalloprotease FtsH [Chloroherpeton thalassium ATCC
           35110]
 gi|193088650|gb|ACF13925.1| ATP-dependent metalloprotease FtsH [Chloroherpeton thalassium ATCC
           35110]
          Length = 640

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 60/250 (24%), Positives = 92/250 (36%), Gaps = 31/250 (12%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T E+  G  EA   L   ++  K+        ++    VL +GPPG GKT LA+ VA E 
Sbjct: 191 TFEDVAGVEEAKEELTEIVDFLKSPEKFQRLGSKTPKGVLLLGPPGTGKTLLAKAVAGEA 250

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG       V   A  +  L    +     ++FIDEI  +       L    +
Sbjct: 251 GVPFFSMSGADFVEMFVGVGASRVRDLFEQAKRHSPCIIFIDEIDAVGRQRGAGLGGGHD 310

Query: 131 DFQLDL------MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNF 182
           + +  L      M G G     + I        AAT R  +L + L    RF   + ++ 
Sbjct: 311 EREQTLNQLLVEMDGFGTHENIILI--------AATNRPDVLDSALLRPGRFDRQVVVDK 362

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            +I   + I++   K   LA   + A                L+      A   +   +T
Sbjct: 363 PDIRGREAILKIHTKKIPLAKDVDIAVLAKSTPGFVGADLANLVNEASILASRNNHDEVT 422

Query: 243 REIADAALLR 252
            E  + A  +
Sbjct: 423 AEDFENARDK 432


>gi|304313998|ref|YP_003849145.1| cell division protein 48 [Methanothermobacter marburgensis str.
           Marburg]
 gi|302587457|gb|ADL57832.1| predicted cell division protein 48 [Methanothermobacter
           marburgensis str. Marburg]
          Length = 729

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 63/262 (24%), Positives = 95/262 (36%), Gaps = 35/262 (13%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
           T E+  G  E    ++  IE    R E            VL  GPPG GKT LA+ VA E
Sbjct: 200 TYEDIGGLKEEVKKVREMIEIPLKRPELFERLGITPPKGVLMHGPPGTGKTLLAKAVANE 259

Query: 78  LGVNFRSTSGPVIAKA--------GDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
              +F + +GP I                         ++FIDEI  ++   E++     
Sbjct: 260 SDAHFIAINGPEIMSKYVGGSEERLREFFEEAEENAPSIIFIDEIDAIAPKREDVSGEVE 319

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                 L+            +  +  +I AT R   L   L+   RF   I +   + E+
Sbjct: 320 RRIVAQLLT-----LMDGLKSRGQVVVIGATNRPDALDPALRRPGRFDREIEIGVPDREE 374

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTP---------RIAGRLLRRVRDFAEVAHA 238
            K I+Q   +   LA  D    E+A  + G             A R+LRRV    E+   
Sbjct: 375 RKEILQIHTRGMPLA-EDVDLDELAEITHGFVGADLESLCKESAMRVLRRV--LPEIKAD 431

Query: 239 KTITREIADAALLRLAIDKMGF 260
           + I +E+    ++  A  K   
Sbjct: 432 EEIPKEVLKKMIVTRADFKEAL 453



 Score = 46.6 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 49/271 (18%), Positives = 85/271 (31%), Gaps = 36/271 (13%)

Query: 26  TLEEFTGQVEACSNLKVFIE--------AAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           + E+  G  +A   L+  +E          K   +    +L  G PG GKT LA+ VA E
Sbjct: 472 SWEDIGGLEDAKQELREAVEWPLKYPDRFKKFGIKPPKGILLHGSPGTGKTLLAKAVANE 531

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM 129
              NF +  GP +           +  +          V+F DEI  ++ +         
Sbjct: 532 SQANFIAVKGPELLSKWVGESEKGVREVFRKARQTAPTVIFFDEIDSIASVR---SGSTA 588

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           +      +V +  +       L    +IAAT R  +L   L         +   + +   
Sbjct: 589 DSGVTQRVVNQLLTEIDGLEELQDVAVIAATNRPDILDPALLRPGRFDRHVKVDDPDREA 648

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
                   +  +   D    +               L ++ D  E      I     +AA
Sbjct: 649 R-----LAIFKVHTKDMPLADDVN------------LEKLADKTEGYVGADIEAVCREAA 691

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGPV 280
           +L L  +    D     +L  + +    G V
Sbjct: 692 MLTLRENMDAEDVPMKHFLEAMEKIKPKGGV 722


>gi|300707453|ref|XP_002995933.1| hypothetical protein NCER_101048 [Nosema ceranae BRL01]
 gi|239605177|gb|EEQ82262.1| hypothetical protein NCER_101048 [Nosema ceranae BRL01]
          Length = 788

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/196 (21%), Positives = 72/196 (36%), Gaps = 25/196 (12%)

Query: 28  EEFTGQVEACSNLKVFIEA--------AKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           ++  G  +  + +K  IE          K   +    +L  GPPG GKT +A+ +A E G
Sbjct: 215 DDVGGCRKQLAQIKELIELPLRHPQLYKKLGVKPPKGILLYGPPGSGKTLIAKAIANETG 274

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMED 131
                 +GP I          +L       E     ++FIDE+  L+   ++        
Sbjct: 275 AFIYMINGPEIMSKMAGESENNLRKAFDEAEKNKPAIIFIDEVDSLAPKRDKTQGEVERR 334

Query: 132 FQLDLMV-GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
               L+   +G  AR   I L      AAT R   +   L+   RFG  + +   +    
Sbjct: 335 IVSQLLTLMDGAKAREGVIVL------AATNRPNSIDPALRRYGRFGKELEIGVPDATGR 388

Query: 189 KTIVQRGAKLTGLAVT 204
             I++   K   ++  
Sbjct: 389 LEILRIHTKNMRMSED 404



 Score = 52.8 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 81/224 (36%), Gaps = 21/224 (9%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVARELG 79
           E+  G  E    L+  I+   +  E            VLF GPPG GKT LA+ VA E  
Sbjct: 488 EDIGGLAEVKIELRETIQYPISYPEKFLKFGLTPSKGVLFYGPPGCGKTLLAKAVATECK 547

Query: 80  VNFRSTSGPVIAKA--GDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAMED 131
            NF S  GP +     G+  A +  L DR       VLF DEI  ++            D
Sbjct: 548 ANFISVKGPELLTMWYGESEANVRELFDRARAAAPCVLFFDEIDSVAKSRGSASGSGGAD 607

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
              D ++ +  +            +I AT R   L + +    R    + +   + +   
Sbjct: 608 ---DRVINQILTEMDGMNAKKNVFIIGATNRPDQLDSAIMRPGRLDQLVYIPLPDADSRM 664

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
           +I++   + T L+        +    R +      + +R    A
Sbjct: 665 SILKAVLRKTPLSPDINLNHLVEATDRFSGADLTEICQRACKLA 708


>gi|221121120|ref|XP_002160048.1| PREDICTED: similar to Replication factor C subunit 2 [Hydra
           magnipapillata]
          Length = 349

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 80/229 (34%), Gaps = 38/229 (16%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           S E   +   RP  L + TG  E    L+VF E        + +++  GPPG+GKTT   
Sbjct: 31  SYELPWVEKYRPLKLTDITGNEETIKRLQVFSEQG-----NVPNIIIAGPPGIGKTTSIL 85

Query: 73  VVAR------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIHRLS 118
            +AR            EL  +       V  K    A     L      ++ +DE   ++
Sbjct: 86  CLARQLLSTSYKDAVMELNASNERGIDVVRNKIKMFAQQKVTLPPGRHKIIILDEADSMT 145

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
              ++ L   ME +                   +RF    A  +   +   +Q R  +  
Sbjct: 146 SGAQQALRRTMELYSKT----------------TRF--ALACNQSDKIIEAIQSRCAVLR 187

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
                + + L+ ++    +   +  TDE    I   ++G  R A   L+
Sbjct: 188 YTKLTDAQLLERLLD-ICEKEKVIKTDEGLEAIVFTAQGDMRQAINNLQ 235


>gi|121997041|ref|YP_001001828.1| DNA polymerase III subunits gamma and tau [Halorhodospira halophila
           SL1]
 gi|121588446|gb|ABM61026.1| DNA polymerase III, subunits gamma and tau [Halorhodospira
           halophila SL1]
          Length = 554

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 59/322 (18%), Positives = 91/322 (28%), Gaps = 68/322 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPR  E+  GQ          +  A A        LF G  G+GKTT+A+++A+ L    
Sbjct: 11  RPRRFEDVAGQEHVL----RALANALADGRLHHAYLFSGTRGVGKTTVARILAKCLNCEH 66

Query: 83  ------------------------RSTSGPVIAKAGDLAALLTNLE------DRDVLFID 112
                                            K  D   LL N++         +  ID
Sbjct: 67  GITAEPCGTCDSCRELDAGRFVDLIEVDAASRTKVEDTRELLDNVQYAPTRGRFKIYLID 126

Query: 113 EIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN-- 168
           E+H LS      L   +E+    +  ++      +     LSR            L    
Sbjct: 127 EVHMLSSHSFNALLKTLEEPPDHVKFLLATTDPQKLPVTVLSRCLQFHLRRLSSTLIRDR 186

Query: 169 --PLQDRFGIPIRLNFYEIEDLKTIVQ-RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
              L +  G+ +                R A    L     A  E A R      + G +
Sbjct: 187 LLALAEEEGVTVDAGAAARLARAADGSLRDA--LSLLDQALAFGEGAARDDEVAAMLGAI 244

Query: 226 LRR--------------------VRDFAEVAHA-----KTITREIADAALLRLAIDKMGF 260
            RR                     R  AEVA         +   +   AL +     +G 
Sbjct: 245 ERRHVLEVLTALADGDGAALVTAARHMAEVAADFDEALAELVATVHSLALAQQVPSAIGD 304

Query: 261 DQLDLRYLTMIARNFGGGPVGI 282
           D+ +   L  +A       + +
Sbjct: 305 DEPERDRLLALAERIDAEDLQL 326


>gi|66934628|gb|AAY58903.1| putative LON protease [Hyaloperonospora parasitica]
          Length = 725

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 83/229 (36%), Gaps = 36/229 (15%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G ++    +  F+  +K + +    ++ FVGPPG+GKT++ + +AR L   F   S
Sbjct: 429 EDHYGLMDIKERVLEFVAVSKLKGDVQGKIICFVGPPGVGKTSIGKSIARSLNREFFRFS 488

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              ++   ++                           ++ IDEI +L    +        
Sbjct: 489 VGGLSDVAEIKGHRRTYVGAMPGKIIQCLKSTQSSNPLILIDEIDKLGRGYQGDPASALL 548

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P+     +D           V ++LSR   I        +  PL DR  +     +
Sbjct: 549 ELLDPSQNSGFVD-------HYMDVPVDLSRVLFICTANVTDTIPAPLLDRMEVLRLSGY 601

Query: 183 YEIEDLKT----IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
              E L      +V R  + TGL  ++     + +       +  +  R
Sbjct: 602 DSPEKLAIAKEYLVPRAREKTGLEKSETTPESLGLTDDAIMALVKQYCR 650


>gi|301623590|ref|XP_002941102.1| PREDICTED: spermatogenesis-associated protein 5-like [Xenopus
           (Silurana) tropicalis]
          Length = 792

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/173 (23%), Positives = 69/173 (39%), Gaps = 18/173 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLED--RDV 108
           VL  GPPG GKT +A+ +A E+G +    +GP I           L  +  +       +
Sbjct: 291 VLLYGPPGTGKTLIARAIANEVGAHVTVINGPEIVSKFYGESEARLRQIFADASQCCPSI 350

Query: 109 LFIDEIHRLSIIV---EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
           +FIDE+  L       +  +   +    L LM G G      ++ +     + AT R   
Sbjct: 351 IFIDELDALCPKREGAQNEVEKRVVASLLTLMDGIGSEESQGQLLV-----LGATNRPHS 405

Query: 166 LTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSR 216
           L   L+   RF   I +     +    I+Q+  K     + +E   ++A R+ 
Sbjct: 406 LDPALRRPGRFDKEIEIGVPNAQGRLDILQKVLKKVPHRLKEEDLAQLADRTH 458



 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 54/265 (20%), Positives = 88/265 (33%), Gaps = 42/265 (15%)

Query: 26  TLEEFTGQVEACSNLKVFIE--------AAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +  +  G       LK  +E          +   +    VL  GPPG  KT +A+ +A E
Sbjct: 526 SWSDIGGLENVKLKLKQAVEWPLMHPDSFIRMGIQPPKGVLLYGPPGCSKTMIAKALANE 585

Query: 78  LGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAM 129
            G+NF +  GP +     G+    +  +  +       +LF DEI  L+I          
Sbjct: 586 SGLNFLAVKGPELMNKYVGESERAVREIFHKARAVAPSILFFDEIDALAIERGSSAGSVA 645

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           +     L+             L    ++AAT R  L+   L  R G              
Sbjct: 646 DRVLAQLLTE-----MDGIEQLKDVVILAATNRPDLIDKALM-RPG-------------- 685

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGT--PRIAGRLLRRVRDFAEVAHAKTITREIAD 247
               R  ++  + + D A      + R    P      L ++ +  E      IT    +
Sbjct: 686 ----RIDRIIYVPLPDAATRREIFKLRFHSMPISTEICLEKLVEQTEKYSGAEITAVCRE 741

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIA 272
           AALL L  D      +   +   +A
Sbjct: 742 AALLALEEDIQAEFIMGRHFEKALA 766


>gi|256421079|ref|YP_003121732.1| ATP-dependent protease La [Chitinophaga pinensis DSM 2588]
 gi|256035987|gb|ACU59531.1| ATP-dependent protease La [Chitinophaga pinensis DSM 2588]
          Length = 800

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 52/268 (19%), Positives = 96/268 (35%), Gaps = 50/268 (18%)

Query: 32  GQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           G  +    +  ++   K + +    +L FVGPPG+GKT+L + +A  +G  +   S   +
Sbjct: 352 GMDKIKERILEYLAVLKLKGDMKSPILCFVGPPGIGKTSLGRSIASAIGRKYVRLSLGGL 411

Query: 91  AKAGDLAALLTNL----------------EDRDVLFIDEIHRL--------SIIVEEILY 126
               ++                           V+ +DEI ++        S  + E+L 
Sbjct: 412 HDESEIRGHRKTYIGAMPGRLLQSIRKVKTSNPVMILDEIDKIGNDHRGDPSSAMLEVLD 471

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           P       D  +        ++ +LS+   IA    +  ++  L+DR  I I L+ Y IE
Sbjct: 472 PEQNGTFYDNYLE-------LEYDLSKVLFIATANNINAISPALRDRLEI-IDLSGYSIE 523

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR-VRDFAEVAH-------- 237
           +   I +R               E         RI+  +L R V+D+   +         
Sbjct: 524 EKVEIAKRHL--------VPKQKEAHGLKSLKMRISNGILERIVQDYTRESGVRELDRQL 575

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDL 265
           A  +     D AL     D +  + ++ 
Sbjct: 576 ASIMRAIAKDVALEEEIPDSLTEEHVER 603


>gi|39937144|ref|NP_949420.1| AAA ATPase [Rhodopseudomonas palustris CGA009]
 gi|39651002|emb|CAE29525.1| AAA ATPase [Rhodopseudomonas palustris CGA009]
          Length = 663

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 53/232 (22%), Positives = 82/232 (35%), Gaps = 17/232 (7%)

Query: 47  AKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALL 100
           A+   EA   VL  GPPG GKT +A+ VARE GV F   +GP I           L  + 
Sbjct: 152 ARLGIEAPKGVLLYGPPGCGKTLIARTVAREAGVYFLHVNGPEIIQKHYGESEEMLRRIF 211

Query: 101 TNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLM-VGEGPSARSVKINLSRFTLI 157
            + + +   ++F DEI  ++   E +L    +     L+ + +G +AR          +I
Sbjct: 212 ADAQKQPAAIIFFDEIDAIAPNRETVLGDVEKRVVAQLLALMDGLTAR------GNIVVI 265

Query: 158 AATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRS 215
           AAT     L   L+   RF   I +   +      I++   +   LA   + A   A   
Sbjct: 266 AATNLPNSLDPALRRPGRFDREIGIAPPDRAGRLEILRIHTRRMPLADDVDLAQIAAAAH 325

Query: 216 RGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRY 267
                    L R             +      AA       ++  D      
Sbjct: 326 GYLGADLAALCREAAMGCTRDLGPRLVAGDPGAAAALDGDLQVRMDHFRRAL 377



 Score = 38.1 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 47/106 (44%), Gaps = 16/106 (15%)

Query: 28  EEFTGQVEACSNLKVFIE--------AAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +E  G  +  + L+  +E         A A+  A   +L  GP G GKT + + +A +  
Sbjct: 398 DEVGGLDDIKALLRETVEWPLKYPQRLAFAKTTAPRGILLTGPTGTGKTLIVRALATQSD 457

Query: 80  VNFRSTSGPVI--AKAGDLAALLTNLEDR------DVLFIDEIHRL 117
           VNF + +GP +     G+    + ++  +       ++F DE+  +
Sbjct: 458 VNFIAVNGPELLSKWVGETERAIRDVFRKARQSAPSIIFFDEVDAI 503


>gi|14590568|ref|NP_142636.1| cell division control [Pyrococcus horikoshii OT3]
 gi|3257095|dbj|BAA29778.1| 840aa long hypothetical cell division control protein (transitional
           endoplasmic reticulum ATPase) [Pyrococcus horikoshii
           OT3]
          Length = 840

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 50/189 (26%), Positives = 73/189 (38%), Gaps = 29/189 (15%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
           T E+  G  EA   ++  +E      E            VL  GPPG GKT LA+ VA E
Sbjct: 210 TYEDIGGLKEAIQKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANE 269

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPA- 128
               F + +GP I           L  +    E+    ++FIDEI  ++   EE++    
Sbjct: 270 ANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKREEVVGEVE 329

Query: 129 --MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
             +    L LM G     + + I         AT R   L   L+   RF   I +   +
Sbjct: 330 KRVVSQLLTLMDGLKGRGKVIVI--------GATNRPDALDPALRRPGRFDREIEVGVPD 381

Query: 185 IEDLKTIVQ 193
            +  K I+Q
Sbjct: 382 KQGRKEILQ 390



 Score = 56.2 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 49/207 (23%), Positives = 77/207 (37%), Gaps = 23/207 (11%)

Query: 28  EEFTGQVEACSNLKVFIE-------AAKARAEALD-HVLFVGPPGLGKTTLAQVVARELG 79
           ++  G  E    L+  +E       A K         VL  GPPG GKT LA+ VA E  
Sbjct: 547 DDIGGLEEVKQELREAVEWPLKYPKAFKKLGITPPKGVLLYGPPGTGKTLLAKAVATESE 606

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAMED 131
            NF +  GP +           +  +          ++FIDEI  ++         +  +
Sbjct: 607 ANFIAVRGPEVLSKWVGESEKRIREIFRKARQAAPAIIFIDEIDAIAPAR----GTSEGE 662

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
              D ++ +  +     +  S   +IAAT R  +L   L    RF   I +   + E   
Sbjct: 663 KVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEEARF 722

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSR 216
            I +   +   LA  D    E+A R+ 
Sbjct: 723 EIFKVHTRSMPLA-DDVDLRELARRTE 748


>gi|312796075|ref|YP_004028997.1| DNA polymerase III subunit gamma/tau [Burkholderia rhizoxinica HKI
           454]
 gi|312167850|emb|CBW74853.1| DNA polymerase III subunit gamma/tau (EC 2.7.7.7) [Burkholderia
           rhizoxinica HKI 454]
          Length = 840

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 46/245 (18%), Positives = 79/245 (32%), Gaps = 55/245 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPR      GQ      L   ++A +     L H  LF G  G+GKTTL++++A+ L   
Sbjct: 11  RPRDFASLVGQEHVVRALTHALQAQR-----LHHAYLFTGTRGVGKTTLSRILAKALNCE 65

Query: 82  ------------------------FRSTSGPVIAKAGDLAALLTNL------EDRDVLFI 111
                                   +            ++AALL             V  I
Sbjct: 66  AGITATPCGVCKACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H L+      +   +E+                    +    I ATT    +   + 
Sbjct: 126 DEVHMLTHHAFNSMLKTLEE------------------PPAHVKFILATTDPQKIPVTVL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L       + + ++R     G+    +A   ++  + G+ R A  L  +   
Sbjct: 168 SRC-LQFNLKQMPAGHIVSHLERILADEGIGFETQALRLLSRAADGSMRDALSLTDQAIA 226

Query: 232 FAEVA 236
           +A  A
Sbjct: 227 YAAGA 231


>gi|291569654|dbj|BAI91926.1| cell division protein FtsH [Arthrospira platensis NIES-39]
          Length = 629

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 63/273 (23%), Positives = 99/273 (36%), Gaps = 23/273 (8%)

Query: 27  LEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVARELG 79
            ++  G  EA   L+  +   K         A     VL VGPPG GKT LA+ +A E G
Sbjct: 173 FDDVAGVEEAKEELQEVVTFLKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAG 232

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMED 131
           V F S SG           A  +  L    ++    ++FIDEI  +       +    ++
Sbjct: 233 VPFFSISGSEFVEMFVGVGASRVRDLFKKAKETAPCIVFIDEIDAVGRQRGAGIGGGNDE 292

Query: 132 FQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            +  L  ++ E               +IAAT R  +L + L    RF   I ++  +I+ 
Sbjct: 293 REQTLNQLLTEMDGFEGNTG----IIIIAATNRPDVLDSALLRPGRFDRQIIVDAPDIKG 348

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
             ++++  A+   LA               T      LL              IT    D
Sbjct: 349 RLSVLEVHARNKKLADKVSLEAIARRTPGFTGADLANLLNEAAILTARRRKDAITMAEID 408

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV 280
            A+ R+     G   LD +   +IA +  G  +
Sbjct: 409 DAVDRVVAGMEGTPLLDGKTKRLIAYHEVGHAI 441


>gi|227506004|ref|ZP_03936053.1| DNA polymerase III subunits gamma and tau [Corynebacterium striatum
           ATCC 6940]
 gi|227197286|gb|EEI77334.1| DNA polymerase III subunits gamma and tau [Corynebacterium striatum
           ATCC 6940]
          Length = 858

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 77/220 (35%), Gaps = 23/220 (10%)

Query: 30  FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP- 88
             GQ +  + L   ++A +         LF GP G GKT+ A+++AR L      TS P 
Sbjct: 1   MVGQEQVTTPLSAALDAGRINHAY----LFSGPRGCGKTSSARIMARSLNCEQGPTSTPC 56

Query: 89  -VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDLM---- 137
            V      LA       + DV  +D      +     L       PA   +++ ++    
Sbjct: 57  GVCDSCVSLAP--GGPGNLDVTELDAASHNGVEDMRELRDRAYYAPAESRYRIFIIDEAH 114

Query: 138 ----VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
                G     + V+        I ATT    +   ++ R              +K +++
Sbjct: 115 MISASGANALLKVVEEPPEHVIFIFATTEPEKIIGTIRSR-THHYPFRLLTPPAMKGLLE 173

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
           R     G+ V D     +     G+PR    +L ++   A
Sbjct: 174 RTVAAEGVHVDDTVYPMVIQAGGGSPRDTLSILDQLLAGA 213


>gi|294654757|ref|XP_456823.2| DEHA2A11286p [Debaryomyces hansenii CBS767]
 gi|199429126|emb|CAG84798.2| DEHA2A11286p [Debaryomyces hansenii]
          Length = 792

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 81/222 (36%), Gaps = 30/222 (13%)

Query: 20  SLLR------PR-TLEEFTGQVEACSNL----KVFIEAA----KARAEALDHVLFVGPPG 64
           S +R      P+    +  GQ E    L    ++ +EAA    K    A   VL  GPPG
Sbjct: 513 SAMREIFLEMPKVYWSDIGGQEELKQKLTEVVQLPLEAADTFNKLGVSAPKGVLLYGPPG 572

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DVLFIDEIHR 116
             KT  A+ +A E G+NF +  GP I     G+    +  +  +       ++F DEI  
Sbjct: 573 CSKTLTAKALATESGLNFLAVKGPEIFNKYVGESERTIREIFRKARAASPSIIFFDEIDA 632

Query: 117 LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RF 174
           +S    E    +     L  ++ E          L    ++ AT R   +   L    R 
Sbjct: 633 IS-GDRESSGTSASQNVLTSLLNEIDGVE----ELKGVVIVGATNRPTEIDPALLRPGRL 687

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSR 216
              I ++  + +    I+ +G     L   +     +A  + 
Sbjct: 688 DRHIYVSPPDYDARLQILTKGCSKFNLDGREVNLSTLADLTN 729



 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 64/183 (34%), Gaps = 14/183 (7%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DV 108
           +L  GPPG GKT L + VA E   +  + +GP I           +  +          +
Sbjct: 296 ILLHGPPGTGKTMLLRCVANETNAHVLTVNGPSIVSKYLGETENAIRDIFEEARKFQPSI 355

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +F+DEI  L+           E   +  ++           +  R  ++ AT R   +  
Sbjct: 356 IFLDEIDSLAPNRNSDDSGETESRVVATLLT----MMDGMGDTGRIVVVGATNRPNSIDP 411

Query: 169 PLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
            L+   RF   + +   ++E    I+ +       +  D    EI   +  T    G  L
Sbjct: 412 ALRRPGRFDQEVEIGIPDVEARGDILIKQFDKMDKSKFDLTKEEINSIASKTHGYVGADL 471

Query: 227 RRV 229
             +
Sbjct: 472 TAL 474


>gi|115391201|ref|XP_001213105.1| hypothetical protein ATEG_03927 [Aspergillus terreus NIH2624]
 gi|114194029|gb|EAU35729.1| hypothetical protein ATEG_03927 [Aspergillus terreus NIH2624]
          Length = 824

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 56/250 (22%), Positives = 92/250 (36%), Gaps = 26/250 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G  EA   L+  +E        +    +    VL VGPPG GKT LA+ VA E 
Sbjct: 355 RFSDVHGCDEAKDELQELVEFLLNPDRFSSLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 414

Query: 79  GVNFRSTSGPVIA------KAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAME 130
           GV F   SG           A  +  L      +   ++FIDE+  +     E    A  
Sbjct: 415 GVPFFYMSGSEFDEVYVGVGAKRVRELFNQARSKAPAIIFIDELDAIGAKRNER-DAAYV 473

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
              L+ ++ E           S   +IAAT    LL   L    RF   + +   ++   
Sbjct: 474 KQTLNQLLTELDGFSQT----SGVIIIAATNYPQLLDKALTRPGRFDRKVTVGLPDVRGR 529

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             I++   K   ++       ++A+ +RGTP  +G  L  + + A +  ++    ++   
Sbjct: 530 MDILRHHMKDVQISTD----VDVAVIARGTPGFSGADLENLVNQAAIYASRNKQTKVGPK 585

Query: 249 ALLRLAIDKM 258
                    M
Sbjct: 586 DFDWAKDKIM 595


>gi|58260308|ref|XP_567564.1| MMS2 [Cryptococcus neoformans var. neoformans JEC21]
 gi|134116242|ref|XP_773075.1| hypothetical protein CNBJ0700 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50255696|gb|EAL18428.1| hypothetical protein CNBJ0700 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57229614|gb|AAW46047.1| MMS2, putative [Cryptococcus neoformans var. neoformans JEC21]
          Length = 810

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 48/259 (18%), Positives = 88/259 (33%), Gaps = 27/259 (10%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVAR 76
            T  +  G  +    L+  ++      E            VLF GPPG GKT LA+ +A 
Sbjct: 476 TTWNDIGGLDKVKRELQETVQFPVEHPEKFLKYGMSPSKGVLFYGPPGTGKTLLAKAIAN 535

Query: 77  ELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPA 128
           E   NF S  GP +     G+  A + ++ D+       V+F DE+  ++          
Sbjct: 536 ECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCVMFFDELDSIAKSRGNSAGDG 595

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
                 D ++ +  +            +I AT R   + + L    R    I +   + E
Sbjct: 596 --GGSSDRVLNQILTEMDGMNAKKNVFIIGATNRPDQIDSALLRPGRLDQLIYIPLPDEE 653

Query: 187 DLKTIVQRGAKLTGLA-------VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
              +I++   + + +        +    A           + A +L  R    A++   +
Sbjct: 654 SRLSILKATLRKSPIDPRVDLDFLAKNTAGFSGADLTEICQRAAKLAIRASIDADIRKER 713

Query: 240 TITREIADAALLRLAIDKM 258
               +   A      ID+ 
Sbjct: 714 ERNEKAEAAGQDVELIDEE 732



 Score = 52.8 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 76/219 (34%), Gaps = 19/219 (8%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLED 105
           +    +L  GPPG GKT +A+ VA E G  F   +GP I          +L       E 
Sbjct: 238 KPPRGILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEK 297

Query: 106 R--DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV-GEGPSARSVKINLSRFTLIAATTR 162
               ++FIDE+  ++   E+            L+   +G  AR      S   ++AAT R
Sbjct: 298 NSPSIIFIDELDSIAPKREKANGEVERRVVSQLLTLMDGLKAR------SNVVVMAATNR 351

Query: 163 VGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPR 220
              +   L+   RF   + +   +      I++   K   L+   +     A        
Sbjct: 352 PNSIDPALRRFGRFDREVDIGIPDPTGRLEILRIHTKNMKLSDDVDLEQIAADTHGYVGA 411

Query: 221 IAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259
               L        +    K    ++ +  +    +D +G
Sbjct: 412 DMASLCSEAAM--QQIREKMDLIDLDEDTIDAEVLDSLG 448


>gi|315042828|ref|XP_003170790.1| cell division protease ftsH [Arthroderma gypseum CBS 118893]
 gi|311344579|gb|EFR03782.1| cell division protease ftsH [Arthroderma gypseum CBS 118893]
          Length = 805

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 56/243 (23%), Positives = 91/243 (37%), Gaps = 26/243 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G  EA   L+  +E        +    +    +L VGPPG GKT LA+ VA E 
Sbjct: 339 RFSDVHGCDEAKDELQELVEFLSNPDRFSSLGGKLPKGILLVGPPGTGKTLLARAVAGEA 398

Query: 79  GVNFRSTSGPVIA------KAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAME 130
           GV F   SG           A  +  L T    +   ++FIDE+  +     E    A  
Sbjct: 399 GVPFFYMSGSEFDEIYVGVGAKRVRELFTQARAKAPAIIFIDELDAIGAKRNER-DAAYV 457

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
              L+ ++ E           S   +IAAT    LL   L    RF   + +N  ++   
Sbjct: 458 KQTLNQLLTELDGFSQT----SGVIIIAATNFPELLDKALTRPGRFDRKVNVNLPDVRGR 513

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             I+    K   ++   +A     + +RGTP  +G  L  + + A +  ++    ++   
Sbjct: 514 VDILNHHMKNIQVSTEVDA----TVIARGTPGFSGADLENLINQAAIRASRDKKAKVGPE 569

Query: 249 ALL 251
              
Sbjct: 570 DFD 572


>gi|284049192|ref|YP_003399531.1| ATP-dependent metalloprotease FtsH [Acidaminococcus fermentans DSM
           20731]
 gi|283953413|gb|ADB48216.1| ATP-dependent metalloprotease FtsH [Acidaminococcus fermentans DSM
           20731]
          Length = 635

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 54/245 (22%), Positives = 95/245 (38%), Gaps = 23/245 (9%)

Query: 25  RTLEEFTGQVEACSNLKVFIE------AAKARAEALD-HVLFVGPPGLGKTTLAQVVARE 77
           +T ++  GQ EA   L+  +         KA    +   VL VGPPG GKT LA+ VA E
Sbjct: 164 KTFKDVAGQDEAKEALQEIVNYLHNPARYKAIGAVMPKGVLLVGPPGTGKTLLAKAVAGE 223

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
             V F S SG           A  +  L    +++   ++FIDEI  +    +   + + 
Sbjct: 224 AKVPFFSISGSEFIEMFVGMGAARVRDLFKQAQEKAPCIVFIDEIDAIGKKRDNGAFGSN 283

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
           ++ +  L   +  S            ++AAT R  +L   L    RF   + +   +++ 
Sbjct: 284 DEREQTL--NQLLSEMDGFDGSKGVIILAATNRPEVLDKALLRPGRFDRRVPVELPDLQG 341

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            + I+    K+    V  +   +    +  T   +G  L  + + A +   +    E+  
Sbjct: 342 REAIL----KVHSHDVKMDPQVDFHTIALATSGASGAELANIVNEAALRAVRMGRSEVIQ 397

Query: 248 AALLR 252
             L  
Sbjct: 398 EDLEE 402


>gi|260221001|emb|CBA29129.1| hypothetical protein Csp_A10600 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 682

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 47/299 (15%), Positives = 83/299 (27%), Gaps = 78/299 (26%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARE 77
               RPR   E  GQ      L   +   +     L H  LF G  G+GKTT+++++A+ 
Sbjct: 7   ARKYRPRNFTEMVGQDHVVQALTNALTTQR-----LHHAYLFTGTRGVGKTTVSRILAKS 61

Query: 78  LGVN-----------------------------FRSTSGPVIAKAGDLAALLTNL----- 103
           L                                +            ++ ALL        
Sbjct: 62  LNCQGVDGQGGITATPCGVCQACTDIDSGRFVDYTELDAASNRGVDEVQALLEQAVYKPV 121

Query: 104 -EDRDVLFIDEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAAT 160
                V  IDE+H L+      +   +E+    L  ++      +     LSR       
Sbjct: 122 QGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNLR 181

Query: 161 TRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPR 220
                                    E ++  + +   +  ++   +A   +A  +RG+ R
Sbjct: 182 PMA---------------------PETIREHLTKVLDVEQVSAEAQALRLLARAARGSMR 220

Query: 221 IAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGP 279
            A  L     D A    +  +        L            +D  Y+  +      G 
Sbjct: 221 DALSL----TDQAIAFGSGQLQEATVRQMLG----------SVDRSYVFRLIEALAAGD 265


>gi|16120141|ref|NP_395729.1| cell division cycle protein [Halobacterium sp. NRC-1]
 gi|169237400|ref|YP_001690604.1| AAA-type ATPase (transitional ATPase homolog) [Halobacterium
           salinarum R1]
 gi|10584255|gb|AAG20864.1| cell division cycle protein [Halobacterium sp. NRC-1]
 gi|167728627|emb|CAP15469.1| AAA-type ATPase (transitional ATPase homolog) [Halobacterium
           salinarum R1]
          Length = 737

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 54/231 (23%), Positives = 82/231 (35%), Gaps = 31/231 (13%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
           T E+  G  +    ++  IE      E            VL  GPPG GKT +A+ VA E
Sbjct: 191 TYEDIGGLDDELEQVREMIELPMRHPELFGTLGIEPPKGVLLHGPPGTGKTLIAKAVANE 250

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM 129
           +  +F++ SGP I           L  +    E+    ++FIDE+  ++   E++     
Sbjct: 251 IDAHFQTISGPEIMSKYYGESEEQLRDVFEEAEENAPAIVFIDELDSIAPKREDVSGDVE 310

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ-----DRFGIPIRLNFYE 184
                  +V +  S         + T+I  T RV  +   L+     DR       +   
Sbjct: 311 RR-----VVAQLLSLMDGLEERGQLTVIGTTNRVDAVDPALRRPGRFDREIEIGVPDHDG 365

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEI-----AMRSRGTPRIAGRLLRRVR 230
            E +  I  RG  L      D  A        A         A   LRR+R
Sbjct: 366 REKILQIHTRGMPLGDGVDLDRYAENTQGFVGADLENLVKESAMHALRRIR 416



 Score = 46.2 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 8/74 (10%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLED 105
           E    VL  GPPG GKT LA+ VA E   NF S  GP +           +  + +   +
Sbjct: 498 EPAKGVLLYGPPGTGKTLLAKAVANEANSNFISIKGPELFNKYVGESERGVREVFSKARE 557

Query: 106 R--DVLFIDEIHRL 117
               V+F DEI  +
Sbjct: 558 NAPTVVFFDEIDAI 571


>gi|150017878|ref|YP_001310132.1| ATP-dependent metalloprotease FtsH [Clostridium beijerinckii NCIMB
           8052]
 gi|149904343|gb|ABR35176.1| ATP-dependent metalloprotease FtsH [Clostridium beijerinckii NCIMB
           8052]
          Length = 627

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 57/255 (22%), Positives = 97/255 (38%), Gaps = 22/255 (8%)

Query: 26  TLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           + ++  GQ EA  +LK  +          K  A+     L VGPPG GKT LA+ VA E 
Sbjct: 178 SFKDVAGQEEAKESLKEIVDFLHKPERYTKIGAKLPKGALLVGPPGTGKTLLAKAVAGEA 237

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVE-EILYPAM 129
            V F S SG       V   A  +  L    E +   ++FIDEI  +    E  I     
Sbjct: 238 KVPFFSLSGSGFVEMFVGVGASRVRDLFAQAEKQAPCIIFIDEIDAIGKSREGNISGNDE 297

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            +  L+ ++ E     S K       ++AAT R  +L   L    RF   + ++  +++ 
Sbjct: 298 REQTLNQLLAEMDGFDSSKG----VVILAATNRPEVLDKALLRPGRFDRRVIVDKPDLKG 353

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            + I++  +K   +  +          +         ++      A      T+ ++   
Sbjct: 354 RENILKVHSKNIIMDESVNLKEIALATAGAVGADLANMVNEAALRAVRMGRDTVRQDDLF 413

Query: 248 AALLRLAIDKMGFDQ 262
            A+  +   K   D+
Sbjct: 414 EAVETVIAGKEKKDR 428


>gi|332521420|ref|ZP_08397874.1| ATP-dependent protease La [Lacinutrix algicola 5H-3-7-4]
 gi|332042819|gb|EGI79018.1| ATP-dependent protease La [Lacinutrix algicola 5H-3-7-4]
          Length = 815

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 55/281 (19%), Positives = 107/281 (38%), Gaps = 42/281 (14%)

Query: 25  RTLE-EFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNF 82
           + L+ +  G  +    +  ++   K R +    +L   GPPG+GKT+L + +A  LG  +
Sbjct: 351 KILDRDHYGLDDVKKRIIEYLAVLKLRNDMKSPILCLYGPPGVGKTSLGKSIAEALGREY 410

Query: 83  RSTSGPVIAKAGDLA------------ALLTNLED----RDVLFIDEIHRLSIIVE---- 122
              S   +    ++              ++ +L+       V  +DEI +LS   +    
Sbjct: 411 VRMSLGGLRDEAEIRGHRKTYIGAMPGRIIQSLKKAGTSNPVFVLDEIDKLSNSHQGDPS 470

Query: 123 ----EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
               E+L P       D  +  G        +LS+   IA +  +  L   L+DR  I I
Sbjct: 471 SALLEVLDPEQNSEFHDNFLEMGY-------DLSKVMFIATSNSLANLQPALRDRMEI-I 522

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
            +  Y IE+   I +R   L    + +    +  ++         +L + V  +   +  
Sbjct: 523 NVTGYTIEEKVEIGKR--HLLPKQLKEHGLEDKHLKLGKP-----QLEKIVEGYTRESGV 575

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGP 279
           +T+ ++IA           M  ++ D++       +  GGP
Sbjct: 576 RTLDKKIAKMVRYAAMNIAM-EEEYDVKVTNDTVVDVLGGP 615


>gi|296453325|ref|YP_003660468.1| DNA polymerase III subunits gamma and tau [Bifidobacterium longum
           subsp. longum JDM301]
 gi|296182756|gb|ADG99637.1| DNA polymerase III, subunits gamma and tau [Bifidobacterium longum
           subsp. longum JDM301]
          Length = 936

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 58/282 (20%), Positives = 93/282 (32%), Gaps = 28/282 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     RP T E   GQ +    L   ++  K     L H  LF GP G GKT+ A+++A
Sbjct: 4   ALYRRYRPDTFEGVIGQDQVTVPLMRALDEGK-----LTHAYLFSGPRGCGKTSSARILA 58

Query: 76  RELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------P 127
           R +      TS P        DLA         DV+ ID      +     L       P
Sbjct: 59  RCVNCAKGPTSHPCGECESCKDLA--TGGPGSIDVVEIDAASHNGVDDARELRERAGFAP 116

Query: 128 AMEDFQLDLMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR---FGI 176
           A + +++ ++         G     + V+        I ATT    +   ++ R   +  
Sbjct: 117 ARDRYKIFILDEAHMVTQQGFNALLKIVEEPPEHVMFIFATTEPDKVIGTIRSRTHHYPF 176

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
            +         L+TI  +        V   A        R T  +  +L+    +     
Sbjct: 177 RLVPQEVMGPYLETICDKEGIRPEPGVLKLAMRAGGGSMRDTLSVLDQLMVGSVEGVITH 236

Query: 237 HAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
            A          AL+  A+D +  +        +I +   GG
Sbjct: 237 DAAVALLGFTPEALIGEAVDAV-INHNGEALYGVIQKVVVGG 277


>gi|295094514|emb|CBK83605.1| ATP-dependent metalloprotease FtsH [Coprococcus sp. ART55/1]
          Length = 680

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 60/267 (22%), Positives = 99/267 (37%), Gaps = 31/267 (11%)

Query: 26  TLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  E   +L+  +          K  A     VL VGPPG GKT +A+ +A E 
Sbjct: 193 TFDDVAGLSEEKEDLEEIVCFLKNPGRFIKVGARIPKGVLLVGPPGTGKTLMAKAIAGEA 252

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG       V   A  +  L    +     ++FIDEI  ++      L    +
Sbjct: 253 GVPFFSISGSDFVEMFVGVGAARVRDLFAQAKKNAPCIVFIDEIDAVARQRGTGLGGGHD 312

Query: 131 DFQLD----LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
           + +      L+  +G  A    I L      AAT RV +L   +    RF   I +N  +
Sbjct: 313 EREQTLNQLLVEMDGFGANEGIIVL------AATNRVDILDKAILRPGRFDRKISVNPPD 366

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           I   + I++       LA   +        +  +      L+      A  A  + I +E
Sbjct: 367 INGREEILKLHVANKPLAEDVDLNEISRTTAGFSGADLENLMNEAAISAAKAGREYINKE 426

Query: 245 IADAALLRLAIDKMGFDQL----DLRY 267
             D + +++ +       +    D + 
Sbjct: 427 DVDKSYIKVGVGGEKRSHVVSEEDRKI 453


>gi|322418779|ref|YP_004198002.1| ATP-dependent metalloprotease FtsH [Geobacter sp. M18]
 gi|320125166|gb|ADW12726.1| ATP-dependent metalloprotease FtsH [Geobacter sp. M18]
          Length = 619

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 57/246 (23%), Positives = 98/246 (39%), Gaps = 27/246 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G       LK  ++  K          +    +L VGPPG GKT LA+ VA E 
Sbjct: 173 TFDDVAGMENCKLELKEVVDYLKEPEQFRQIGGKVPKGILLVGPPGTGKTLLARAVAGEA 232

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAME 130
           GVNF + S        V   A  +  L  N +     ++FIDEI  +       L    +
Sbjct: 233 GVNFFTISASQFIEMFVGVGASRVRDLFANAKKGAPSIIFIDEIDAVGRSRGTGLGGGHD 292

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E       +       ++AAT R  +L   L    RF   + +   +  
Sbjct: 293 EREQTLNQLLSEMDGFDRHE----EVIVLAATNRPDVLDPALLRPGRFDRHVVIERPDWR 348

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           D + I++  A+   +A       + A  ++GTP + G  L  + + A +  ++     + 
Sbjct: 349 DREKILRVHARKITMAE----GVDFAAIAKGTPGMTGADLENLVNEAAILASREKASAVT 404

Query: 247 DAALLR 252
            A L +
Sbjct: 405 MAHLEQ 410


>gi|240276299|gb|EER39811.1| intermembrane space AAA protease IAP-1 [Ajellomyces capsulatus
           H143]
          Length = 818

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 56/260 (21%), Positives = 90/260 (34%), Gaps = 27/260 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAA-------KARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G  EA   L+  +E             +    VL VGPPG GKT LA+ VA E 
Sbjct: 352 RFSDVHGCDEAKEELQELVEFLTNPERFNNLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 411

Query: 79  GVNFRSTSGPVIA------KAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAME 130
           GV F   SG           A  +  L      +   ++FIDE+  +     E    A  
Sbjct: 412 GVPFFYMSGSEFDEVYVGVGAKRVRELFNQARTKAPAIIFIDELDAIGAKRNER-DAAYV 470

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
              L+ ++ E               +IAAT    LL   L    RF   + +   ++   
Sbjct: 471 KQTLNQLLTELDGFSQSTG----VIIIAATNYPKLLDKALTRPGRFDRRVVVGLPDVRGR 526

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             I++   K   ++       +  + +RGTP  +G  L  + + A +  +K    ++   
Sbjct: 527 VDILKHHMKNVQISTD----VDTTVIARGTPGFSGADLENLVNQAAIHASKNKQTKVGPK 582

Query: 249 ALLRLAI-DKMGFDQLDLRY 267
                     MG +      
Sbjct: 583 DFDWAKDKIMMGAEARSRVM 602


>gi|222632318|gb|EEE64450.1| hypothetical protein OsJ_19296 [Oryza sativa Japonica Group]
          Length = 1012

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 84/222 (37%), Gaps = 16/222 (7%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFR 83
           P+T ++  GQ      L     A   R   L +V F GP G GKT+ A+V A+ L  +  
Sbjct: 339 PKTFKDMIGQSLVVQALS---NAILKRKIGLVYV-FYGPHGTGKTSCARVFAKALNCHSP 394

Query: 84  STSGPVIAKAG----DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
               P  + A     +L    + +E   V  ID    + I+   +L P     ++ ++  
Sbjct: 395 EHPRPCDSCASCIAHNLGKSRSLVEIGPVGNIDLDSIVDILDNVMLSPVPTQHRVFIVDD 454

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-------RFGIPIRLNFYEIEDLKTIV 192
                      +S+    A    V +L +P  D       R          E + + T +
Sbjct: 455 CNTLPPDTWSVISKVIERAPRRVVFILISPNLDLPHIIVSRCQKFFFPKLKECDIVNT-L 513

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
           Q  +   GL V  +A   IA RS G+ R A   L ++    +
Sbjct: 514 QWISTSEGLDVDRDALKLIASRSDGSLRDAEMTLDQLSLLGQ 555


>gi|194751473|ref|XP_001958051.1| GF10722 [Drosophila ananassae]
 gi|190625333|gb|EDV40857.1| GF10722 [Drosophila ananassae]
          Length = 1005

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 77/231 (33%), Gaps = 37/231 (16%)

Query: 32  GQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           G  +    +  FI  +  +      +L F GPPG+GKT++A+ +AR L   +   S   +
Sbjct: 519 GMEDIKKRILEFIAVSSLKGTTQGKILCFHGPPGVGKTSIAKSIARALNREYFRFSVGGM 578

Query: 91  AKAGDLAALLTNLE----------------DRDVLFIDEIHRLSIIVE--------EILY 126
               ++                        +  ++ IDE+ ++    +        E+L 
Sbjct: 579 TDVAEIKGHRRTYVGAMPGKLIQCLKKTKIENPLVLIDEVDKIGKGYQGDPSSALLELLD 638

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           P      LD           V ++LSR   I     +  +  PL+DR  +     +   E
Sbjct: 639 PEQNANFLD-------HYLDVPVDLSRVLFICTANVIDTIPEPLRDRMELIEMSGYVAEE 691

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            +       A+   +            + + T      L+R     + V +
Sbjct: 692 KIA-----IARQYLIPQAMNDCGLTDEQIKITEDALNMLIRSYCRESGVRN 737


>gi|119190207|ref|XP_001245710.1| hypothetical protein CIMG_05151 [Coccidioides immitis RS]
          Length = 986

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 68/334 (20%), Positives = 118/334 (35%), Gaps = 47/334 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEA----------LDHVLFVGPPGLG 66
            D   +R  + ++     E    LK     +  R +A          +  +L  GPPG G
Sbjct: 668 VDAESIR-TSFKDVHVPQETIEALKTLTSLSLVRPDAFTYGVLATDKIPGLLLYGPPGTG 726

Query: 67  KTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLS 118
           KT LA+ VARE G      SG  +          ++ A+ T  +     V+FIDE   + 
Sbjct: 727 KTLLAKAVARESGATVLEVSGSEVYDMYVGEGEKNVKAIFTLAKKLSPCVVFIDEADAIF 786

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
                          ++  + E               ++ AT R   L + +  R    +
Sbjct: 787 CSRTGASNRTSHRELINQFLREWDGMSETSA-----FIMVATNRPFDLDDAVLRRLPRRL 841

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
            ++    +D   I++   K   +      + ++   +R TP  +G  L+ +   A +A  
Sbjct: 842 LVDLPTEKDRHEILKIHLKDEAVDK----SVDLVDLARRTPFYSGSDLKNMSVAAALA-- 895

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
               RE  DAA+     +       + R L     +F      +E ISA +SE   ++  
Sbjct: 896 --CVREEYDAAIRHKGDEPYK--YPERRILKS--HHFDRA---MEEISASISEDMSSL-T 945

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
            I  +   + +  R  +GR      W   G   P
Sbjct: 946 AIRKF--DEKYGDR--KGRRKKSAGW---GFTPP 972


>gi|37521178|ref|NP_924555.1| DNA polymerase III gamma and tau subunits [Gloeobacter violaceus
           PCC 7421]
 gi|35212174|dbj|BAC89550.1| DNA polymerase III gamma and tau subunits [Gloeobacter violaceus
           PCC 7421]
          Length = 632

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 79/256 (30%), Gaps = 53/256 (20%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +      RP+   +  GQ    + L   ++A +         LF G  G GKTT A+++A
Sbjct: 4   EPLHHKYRPQRFGDVVGQGPIVTTLTNALKAGRIAHAY----LFTGSRGTGKTTTARLIA 59

Query: 76  RELGVNF------------------------RSTSGPVIAKAGDLAALLTNLE------D 105
           + L                                        ++  L+   +       
Sbjct: 60  KALNCIHGPTPDPCGRCEQCLAIATGSALDVIEIDAASNTGVDNIRELIERAQFAPVQSR 119

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
           + V  +DE+H LS      L   +E+                    +  T + ATT    
Sbjct: 120 QKVYILDEVHMLSSAAFNCLLKTLEE------------------PPAHVTFVLATTDPQK 161

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           +   +  R           + D+   ++  A    + +  EA   +A  ++G  R A  L
Sbjct: 162 VLPTVISRCQ-RFDFRRIPLTDMVKHLEEIAWKEDIDIEHEAVELVAQIAQGGLRDAESL 220

Query: 226 LRRVRDFAEVAHAKTI 241
           L ++        A+ I
Sbjct: 221 LDQLALLEGTIGAERI 236


>gi|325089842|gb|EGC43152.1| intermembrane space AAA protease [Ajellomyces capsulatus H88]
          Length = 818

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 56/260 (21%), Positives = 90/260 (34%), Gaps = 27/260 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAA-------KARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G  EA   L+  +E             +    VL VGPPG GKT LA+ VA E 
Sbjct: 352 RFSDVHGCDEAKEELQELVEFLTNPERFNNLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 411

Query: 79  GVNFRSTSGPVIA------KAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAME 130
           GV F   SG           A  +  L      +   ++FIDE+  +     E    A  
Sbjct: 412 GVPFFYMSGSEFDEVYVGVGAKRVRELFNQARTKAPAIIFIDELDAIGAKRNER-DAAYV 470

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
              L+ ++ E               +IAAT    LL   L    RF   + +   ++   
Sbjct: 471 KQTLNQLLTELDGFSQSTG----VIIIAATNYPKLLDKALTRPGRFDRRVVVGLPDVRGR 526

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             I++   K   ++       +  + +RGTP  +G  L  + + A +  +K    ++   
Sbjct: 527 VDILKHHMKNVQISTD----VDTTVIARGTPGFSGADLENLVNQAAIHASKNKQTKVGPK 582

Query: 249 ALLRLAI-DKMGFDQLDLRY 267
                     MG +      
Sbjct: 583 DFDWAKDKIMMGAEARSRVM 602


>gi|296284716|ref|ZP_06862714.1| DNA polymerase III subunits gamma and tau [Citromicrobium
           bathyomarinum JL354]
          Length = 606

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 57/306 (18%), Positives = 96/306 (31%), Gaps = 36/306 (11%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH-VLFVGPPGLGKTTL 70
                      RP+T  +  GQ      L   I     R + L H  L  G  G+GKT+ 
Sbjct: 59  AQPYRVLARKYRPQTFSQLIGQEPMVQTLANAI-----RRDRLAHAFLMTGVRGVGKTST 113

Query: 71  AQVVARELGV-NFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-------EIHRLSIIVE 122
           A+++A+ L         GP I   G         E R +  I+        +  +  I+E
Sbjct: 114 ARLIAKALNCIGPDGQGGPTIDPCGVCEPCRAIAEGRHIDVIEMDAASHTGVDDVREIIE 173

Query: 123 EILYPAMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
            + Y A+       ++ E             ++++   +    + ATT V  L   +  R
Sbjct: 174 AVRYAAVSARYKIYIIDEVHMLSRNAFNALLKTLEEPPAHVKFLFATTEVDKLPVTVLSR 233

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                 L     E L           G+    EA   +A  + G+ R    +L +    A
Sbjct: 234 TQ-RFDLRRIPTERLGEHFAWVCGQEGVEAEPEALNLVAAAAEGSVRDGLSILDQAIAHA 292

Query: 234 EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGP-VGIETIS--AGLS 290
           ++     +T       L               R L  I     G P   ++ ++    L 
Sbjct: 293 DLDSDAKVTAARVRDMLGLADAGAQ------RRLLGAILE---GEPKTMLDAVADQYALG 343

Query: 291 EPRDAI 296
               A+
Sbjct: 344 VEPLAL 349


>gi|284161883|ref|YP_003400506.1| ATPase AAA [Archaeoglobus profundus DSM 5631]
 gi|284011880|gb|ADB57833.1| AAA ATPase central domain protein [Archaeoglobus profundus DSM
           5631]
          Length = 499

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 76/233 (32%), Gaps = 38/233 (16%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH--VLFVGPPGLGKTTLAQVVA 75
            +   RP+TL++          L+  I  AK   E +    +L  GPPG+GKT+LA  +A
Sbjct: 3   WVEKYRPKTLKDVV---ADKDILERVIAWAKRWQEGIPQKPLLLGGPPGVGKTSLALALA 59

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNL-----------------EDRDVLFIDEIHRLS 118
              G      +         +  ++                        ++ +DE+  +S
Sbjct: 60  NTFGWEVVELNASDQRSWQIIRRIVGEAAFSETISSEGEFLSSESGRLKLILLDEVDNIS 119

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
              +                GE    + +K    R  +I        L+  L+D      
Sbjct: 120 KKED--------------FGGESALIKLLK-RKPRQPIILTANDPYKLSKELRDLCEFVQ 164

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
                  + +  +++R     G+     A   IA  + G  R A   L+ + +
Sbjct: 165 FKRLRT-DQIVKVLERICASEGIKADRNALRLIAQNAGGDLRAAINDLQAIAE 216


>gi|11498895|ref|NP_070126.1| cell division protein CDC48 [Archaeoglobus fulgidus DSM 4304]
 gi|41688749|sp|O28972|Y1297_ARCFU RecName: Full=Cell division cycle protein 48 homolog AF_1297
 gi|2649281|gb|AAB89948.1| cell division control protein 48, AAA family (cdc48-1)
           [Archaeoglobus fulgidus DSM 4304]
          Length = 733

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 67/266 (25%), Positives = 97/266 (36%), Gaps = 50/266 (18%)

Query: 26  TLEEFTGQVEACSNLKVFIEAA-----------KARAEALDHVLFVGPPGLGKTTLAQVV 74
           T E+  G       L++  E             +   E    VL  GPPG GKT +A+ V
Sbjct: 180 TYEDIGG---LKRELRLVREMIELPLKHPELFQRLGIEPPKGVLLYGPPGTGKTLIAKAV 236

Query: 75  ARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILY 126
           A E+  +F   SGP I           L  +    ++    ++FIDEI  ++   EE+  
Sbjct: 237 ANEVDAHFIPISGPEIMSKYYGESEQRLREIFEEAKENAPSIIFIDEIDSIAPKREEVTG 296

Query: 127 PAMEDFQLDLM-VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183
                    L+ + +G  AR          +IAAT R   +   L+   RF   I +   
Sbjct: 297 EVERRVVAQLLALMDGLEAR------GDVIVIAATNRPDAIDPALRRPGRFDREIEIGVP 350

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTP---------RIAGRLLRRV----- 229
           + E  K I++   +   LA  D    E+A  + G             A   LRRV     
Sbjct: 351 DKEGRKEILEIHTRKMPLA-EDVDLEELAELTNGFVGADLEALCKEAAMHALRRVLPEID 409

Query: 230 ----RDFAEVAHAKTITREIADAALL 251
                  AEV     +TRE    AL 
Sbjct: 410 IEAEEIPAEVIENLKVTREDFMEALK 435



 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 60/282 (21%), Positives = 96/282 (34%), Gaps = 40/282 (14%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARELG 79
           E+  G   A   L   +E      E            +L  GPPG GKT LA+ VA E  
Sbjct: 455 EDIGGLEHAKQELMEAVEWPLKYPEVFRAANIKPPRGILLFGPPGTGKTLLAKAVANESN 514

Query: 80  VNFRSTSGPVI--AKAGDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAMED 131
            NF S  GP +     G+    +  +  +       V+F DEI  L+     I    + +
Sbjct: 515 ANFISVKGPELLSKWVGESEKHVREMFRKARQVAPCVIFFDEIDSLAPRRGGIGDSHVTE 574

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE----- 186
             +  ++ E          L    +IAAT R  ++   L     +   +     +     
Sbjct: 575 RVVSQLLTELDGLE----ELKDVVVIAATNRPDMIDPALLRPGRLERHIYIPPPDKKARV 630

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTP----RIAGRLLRRV--------RDFAE 234
           ++  I  RG  L      +E A +    S        R AG L  R          +  E
Sbjct: 631 EIFKIHLRGKPLADDVNIEELAEKTEGYSGADIEAVCREAGMLAIRELIKPGMTREEAKE 690

Query: 235 VAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFG 276
            A    IT++  + AL ++        + D+     +  +F 
Sbjct: 691 AAKKLKITKKHFEEALKKVRPS---LTKEDVEKYEKLIEDFH 729


>gi|325679414|ref|ZP_08158999.1| ATP-dependent metallopeptidase HflB [Ruminococcus albus 8]
 gi|324109011|gb|EGC03242.1| ATP-dependent metallopeptidase HflB [Ruminococcus albus 8]
          Length = 654

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 59/243 (24%), Positives = 93/243 (38%), Gaps = 23/243 (9%)

Query: 26  TLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  E    LK  +       + A+  A     VL +GPPG GKT LA+ VA E 
Sbjct: 170 TFADVAGADEEKEELKEIVDFLKDGRKYAEIGARIPKGVLLLGPPGTGKTLLARAVAGEA 229

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  L    +     ++FIDEI  +       L    +
Sbjct: 230 NVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKSAPSIIFIDEIDAVGRQRGAGLGGGHD 289

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E       +       ++AAT R  +L   L    RF   I +++ +++
Sbjct: 290 EREQTLNQLLVEMDGFEDNES----VIVMAATNRRDILDPALLRPGRFDRQILVSYPDVK 345

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++   K   LA   + +         T      L+      A   + K ITRE  
Sbjct: 346 GREEILKVHTKNKPLAPDVDLSTIAKSTVGFTGADLENLVNEASLLAARKNKKAITREDL 405

Query: 247 DAA 249
           + A
Sbjct: 406 EEA 408


>gi|254573476|ref|XP_002493847.1| Putative ATPase of the AAA family [Pichia pastoris GS115]
 gi|238033646|emb|CAY71668.1| Putative ATPase of the AAA family [Pichia pastoris GS115]
 gi|328354331|emb|CCA40728.1| Uncharacterized AAA domain-containing protein C16E9.10c [Pichia
           pastoris CBS 7435]
          Length = 818

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 85/229 (37%), Gaps = 19/229 (8%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLED 105
                VL  GPPG GKTT+A  +A EL V F S S P +           +  +    ++
Sbjct: 227 HPPRGVLLHGPPGCGKTTIANALAGELQVPFISLSAPSVVSGMSGESEKKIRGIFEEAKE 286

Query: 106 RD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
               ++F DEI  ++   +      ME   +  ++         K +     +I AT R 
Sbjct: 287 LAPCLIFFDEIDAITPKRDGGAQREMERRIVAQLLTSMDELSLDKTDGKPVIIIGATNRP 346

Query: 164 GLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRI 221
             L   L+   RF   I +N         I++         +      ++   ++ TP  
Sbjct: 347 DSLDPALRRAGRFDREICINVPNELARYNIME----SMMKTIKASGDLQLMKLAKMTPGY 402

Query: 222 AGRLLRRVRDFAEVAHAK----TITREIADAALL-RLAIDKMGFDQLDL 265
            G  L+ +   A ++  K    T+++E     +      +K   D +D+
Sbjct: 403 VGADLKALVSAAGISAIKRIFSTLSQEQEKKFIEAMYEEEKQDEDTMDI 451



 Score = 45.8 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 77/222 (34%), Gaps = 16/222 (7%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLED 105
           K    A   VL  GPPG GKT LA+ VA E   NF S  GP +     G+    +  +  
Sbjct: 547 KVGITAPAGVLMWGPPGCGKTLLAKAVANESKANFISIKGPELLNKYVGESEKAIRQVFS 606

Query: 106 RD------VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA 159
           R       V+F DE+  L     +          ++ ++ E         +     +I A
Sbjct: 607 RARASIPCVIFFDELDALVPRR-DASLSESSSRVVNTLLTE----LDGLNDRKGIFVIGA 661

Query: 160 TTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAV-TDEAACEIAMRSR 216
           T R  ++   +    R    + +     ++   I++   ++ G  + +D     IA   R
Sbjct: 662 TNRPDMIDPAMLRPGRLDKTLYIELPTADERLEIMKTVIRVNGTPISSDVNLESIAHDER 721

Query: 217 GTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKM 258
                   L   VR+   ++  +    EI          D  
Sbjct: 722 CRNFSGADLSSLVREAGVISLKRRFFTEINQGVEDICISDSE 763


>gi|258565449|ref|XP_002583469.1| predicted protein [Uncinocarpus reesii 1704]
 gi|237907170|gb|EEP81571.1| predicted protein [Uncinocarpus reesii 1704]
          Length = 953

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 73/336 (21%), Positives = 120/336 (35%), Gaps = 46/336 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEA----------LDHVLFVGPPGLG 66
            D   +R  T  +     E    LK     +  R +A          +  +L  GPPG G
Sbjct: 635 VDAEGIR-TTFADVHVPKETVEALKTLTSLSLVRPDAFTYGVLSTDKIPGLLLYGPPGTG 693

Query: 67  KTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLS 118
           KT LA+ VARE G      SG  +          ++ A+ T  +     V+FIDE   + 
Sbjct: 694 KTLLAKAVARESGATVLEVSGSEVYDMYVGEGEKNVKAIFTLAKKLSPCVVFIDEADAIF 753

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
                          ++  + E               ++ AT R   L + +  R    +
Sbjct: 754 CSRTGASSRTSHRELINQFLREWDGMSETSA-----FIMVATNRPFDLDDAVLRRLPRRL 808

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
            ++    +D   I++   K   L  T     ++A  SR TP  +G  L+ +   A +A  
Sbjct: 809 LVDLPTEQDRHEILKIHLKGETLDET----IDLAEISRRTPFYSGSDLKNMSVAAALA-- 862

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
               RE  DAA      +   +   + R L     +F      +E ISA +SE   ++  
Sbjct: 863 --CVREEYDAATKHEGDEP--YQYPERRILR--PHHFDRA---MEEISASISEDMSSL-T 912

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHL--GIDIP 332
            I  +   + +  R  +GR      W  +  G+  P
Sbjct: 913 AIRKF--DEKYGDR--KGRRKKAAGWGFIPPGLPEP 944


>gi|225559825|gb|EEH08107.1| intermembrane space AAA protease IAP-1 [Ajellomyces capsulatus
           G186AR]
          Length = 822

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 56/260 (21%), Positives = 90/260 (34%), Gaps = 27/260 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAA-------KARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G  EA   L+  +E             +    VL VGPPG GKT LA+ VA E 
Sbjct: 356 RFSDVHGCDEAKEELQELVEFLTNPERFNNLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 415

Query: 79  GVNFRSTSGPVIA------KAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAME 130
           GV F   SG           A  +  L      +   ++FIDE+  +     E    A  
Sbjct: 416 GVPFFYMSGSEFDEVYVGVGAKRVRELFNQARTKAPAIIFIDELDAIGAKRNER-DAAYV 474

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
              L+ ++ E               +IAAT    LL   L    RF   + +   ++   
Sbjct: 475 KQTLNQLLTELDGFSQSTG----VIIIAATNYPKLLDKALTRPGRFDRRVVVGLPDVRGR 530

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             I++   K   ++       +  + +RGTP  +G  L  + + A +  +K    ++   
Sbjct: 531 VDILKHHMKNVQISTD----VDTTVIARGTPGFSGADLENLVNQAAIHASKNKQTKVGPK 586

Query: 249 ALLRLAI-DKMGFDQLDLRY 267
                     MG +      
Sbjct: 587 DFDWAKDKIMMGAEARSRVM 606


>gi|332796393|ref|YP_004457893.1| AAA ATPase [Acidianus hospitalis W1]
 gi|332694128|gb|AEE93595.1| AAA family ATPase, CDC48 subfamily [Acidianus hospitalis W1]
          Length = 750

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 49/189 (25%), Positives = 78/189 (41%), Gaps = 23/189 (12%)

Query: 24  PR-TLEEFTGQVEACSNLKVFIE--------AAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           P+    +  G  +    L+  IE          K+   A   VL  GPPG GKT LA+ V
Sbjct: 447 PKVRWSDIGGLEDVKQQLREAIEWQIKFPDVFTKSGIRAPKGVLLFGPPGTGKTMLAKAV 506

Query: 75  ARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILY 126
           A E G NF +  GP V++K  G+    +  +  R       V+F DEI  ++ +      
Sbjct: 507 ATESGANFIAVRGPEVLSKWVGESEKAIREIFRRARQTAPTVIFFDEIDSIAPMR----G 562

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
            A +    + +V +  +       L++  +IAAT R  +L   L    RF   I +   +
Sbjct: 563 FAHDSGVTERIVNQLLAEMDGITPLNKVVVIAATNRPDILDPALLRPGRFDRLIYVPPPD 622

Query: 185 IEDLKTIVQ 193
                 I++
Sbjct: 623 KIARLEILK 631



 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/192 (22%), Positives = 70/192 (36%), Gaps = 15/192 (7%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLED 105
           E    +L  GPPG+GKT LA+ +A E+G  F S +GP I           L  +      
Sbjct: 209 EPPKGILLYGPPGVGKTLLARALANEIGAYFISINGPEIMSKFYGESEERLRQIFDEANK 268

Query: 106 R--DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
               ++FIDEI  ++   EE+     +     L+               +  +I AT R 
Sbjct: 269 NAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLT-----LMDGIKGRGKIIVIGATNRP 323

Query: 164 GLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRI 221
             +   L+   RF   I +   + +  K I+Q   +   L+          M +  T   
Sbjct: 324 DAIDPALRRPGRFDREIEIRPPDTKARKEILQVHTRSMPLSDDVNLDDIAEMTNGYTGAD 383

Query: 222 AGRLLRRVRDFA 233
              L +     A
Sbjct: 384 LAALAKEAAMVA 395


>gi|326498857|dbj|BAK02414.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1174

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 79/234 (33%), Gaps = 25/234 (10%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           VS + +     RPR+  E  GQ     +L   I     R       LF GP G GKT+ A
Sbjct: 402 VSDQRSLSQKYRPRSYHEIVGQNFVVQSLSNAI----IRERIAPAYLFHGPRGTGKTSAA 457

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-------EIHRLSIIVEEI 124
           ++ +  L       + P     G             +  I+        I+R+  ++E I
Sbjct: 458 RIFSAALSCTANGENKP----CGVCMECNDFFSGNGINLIEVDASNKKGINRIRHLIENI 513

Query: 125 LYPAMEDFQLDLMVGEGPSARS---------VKINLSRFTLIAATTRVGLLTNPLQDRFG 175
              A        +V E     S         +   L     I  T     L   +  R  
Sbjct: 514 PASATSSRYKVFVVDECHMVSSKVWSAFMKFLDEPLPHVVFIFITIDPENLPRAVISRCQ 573

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
             +     +I+ +   +++ A    L +   A   IA+ S G+ R A  +L ++
Sbjct: 574 KYMFSKIKDIDIVCR-LRKIAVKETLDIELAALDLIALNSDGSLRDAETMLDQL 626


>gi|169834551|ref|YP_001693253.1| DNA polymerase III, subunits gamma and tau [Clostridium botulinum
           B1 str. Okra]
 gi|169123099|gb|ACA46934.1| DNA polymerase III, subunits gamma and tau [Clostridium botulinum
           B1 str. Okra]
          Length = 472

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/237 (18%), Positives = 90/237 (37%), Gaps = 29/237 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPR  +   GQ     N K+ +   + R   + H  LF G  G GKTT A++ A+ +  +
Sbjct: 7   RPRIFKYVVGQ---GENTKILLN--QVRTGHIGHAYLFCGNRGSGKTTTARIFAKAVNQH 61

Query: 82  FR--STSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQL 134
            +        ++K  D    +      D++ +D      I  +  I+E+  Y   E    
Sbjct: 62  DKNGEPLDNELSKKIDAGNCI------DIVELDAASHNGIEDIRNIIEQAQYAPSECKYR 115

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             ++ E             + ++        I ATT    L   +  R          ++
Sbjct: 116 VFIIDEVHMLSISAVNAFLKVLEEPPKNVIFILATTDPQKLPITILSRCQ-RFDFKRIDV 174

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            ++   ++   +   + + +++   I++ + G  R A  +L +VR   E+ ++   T
Sbjct: 175 ANIFNRLKYICEHEKIKIDNKSLKLISIVADGAMRDAISILDQVRTMEEITYSNVTT 231


>gi|86738987|ref|YP_479387.1| DNA polymerase III subunits gamma and tau [Frankia sp. CcI3]
 gi|86565849|gb|ABD09658.1| DNA polymerase III, subunits gamma and tau [Frankia sp. CcI3]
          Length = 812

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 75/233 (32%), Gaps = 25/233 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A  +  RP T  +  GQ      L+  +   +     L H  LF GP G GKT+ A+++A
Sbjct: 4   ALYNRYRPATFAQVVGQEHVTDALRKALRTGR-----LHHAYLFSGPRGCGKTSSARILA 58

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAM 129
               +N      P      D    +      DV  ID      +     L       PA 
Sbjct: 59  --ASLNCVQGPTPEPCGVCDECVGIRTGASMDVTEIDAASHGLVDDARDLRERAFFAPAS 116

Query: 130 EDFQLDLMVGE--------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDR---FGIPI 178
             F++ ++               + V+        + ATT    +   ++ R   +   +
Sbjct: 117 ARFKVFVVDEAHMVTAAAFNALLKVVEEPPPYLKFVFATTEPDKVIPTIRSRTHHYAFRL 176

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
                  E L ++  R   +   AV        A   R +  +  +LL    D
Sbjct: 177 VPPGVLREHLASVCAREGVVVDPAVLPLIVRAGAGSVRDSLSVLDQLLAGADD 229


>gi|222445802|ref|ZP_03608317.1| hypothetical protein METSMIALI_01445 [Methanobrevibacter smithii
           DSM 2375]
 gi|222435367|gb|EEE42532.1| hypothetical protein METSMIALI_01445 [Methanobrevibacter smithii
           DSM 2375]
          Length = 740

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 46/195 (23%), Positives = 74/195 (37%), Gaps = 23/195 (11%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALD--------HVLFVGPPGLGKTTLAQVVARELG 79
           E+  G  +    ++  IE    R E  D         VL  GPPG GKT LA+ VA E  
Sbjct: 213 EDIGGLKDEVKKVREMIEIPLKRPELFDKLGIAPPKGVLMHGPPGTGKTLLAKAVASESD 272

Query: 80  VNFRSTSGPVIAKA------GDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAMED 131
            +F + +GP I          +L       E+    ++FIDE+  ++   E+        
Sbjct: 273 AHFIAINGPEIMSKYVGGSEENLREYFEEAEENAPSIIFIDELDAIAPKREDTQGETERR 332

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
               L+            +  +  +I AT R   L   L+   RF   I +   + E+ +
Sbjct: 333 TVAQLLT-----LMDGLKSRGQVVVIGATNRPDSLDQALRRPGRFDREIEIGVPDSEERE 387

Query: 190 TIVQRGAKLTGLAVT 204
            I++   +   LA  
Sbjct: 388 EILEIHTRNMPLAED 402



 Score = 45.1 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 40/184 (21%), Positives = 64/184 (34%), Gaps = 21/184 (11%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARELG 79
           ++  G  +    LK  +E      E             L  G PG GKT LA+ VA E  
Sbjct: 485 DDVGGLDDVKQELKEAVEWPLKHPEKFEKFGVRPPKGTLLYGVPGTGKTLLAKAVASESE 544

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAMED 131
            NF S  GP +           +  +    +     V+F DEI  ++           + 
Sbjct: 545 ANFISIKGPELLSKWVGESEQGVREVFRKAKQTAPTVIFFDEIDSIASTRSAN---DSDS 601

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
                +V +  +       L    +IAAT R  +L   L    RF   I+++    +   
Sbjct: 602 GVTKRVVNQLLTEMDGLEELEDVAIIAATNRPDILDAGLMRPGRFDRHIKVDLPNEDARL 661

Query: 190 TIVQ 193
           +I +
Sbjct: 662 SIFK 665


>gi|163867528|ref|YP_001608727.1| DNA polymerase III subunits gamma and tau [Bartonella tribocorum
           CIP 105476]
 gi|161017174|emb|CAK00732.1| DNA polymerase III gamma and tau subunit [Bartonella tribocorum CIP
           105476]
          Length = 646

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 83/227 (36%), Gaps = 21/227 (9%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+   +  GQ      L    E  +         +  G  G+GKTT A+++AR L
Sbjct: 14  ARKYRPQNFSDLIGQEAMVRTLTNAFEKGRIAQAW----MLTGIRGVGKTTTARILARAL 69

Query: 79  GVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
               +    P  V+   G+    +      DV+ +D      I  +  I+E+I Y  +  
Sbjct: 70  NYKTKDIDQPTTVLDTLGEHCTQIIEGRHIDVIEMDAASHTGIDDIREIIEQIRYRPVSA 129

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++   S    I ATT +  +   +  R      L  
Sbjct: 130 RYKVYIIDEVHMLSTQAFNGLLKTLEEPPSHVKFIFATTEIRKVPITILSRCQ-RFDLRR 188

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
            E + L   + + AK   + V D+A   IA  + G+ R A  +  + 
Sbjct: 189 IEAKALSAHLHQIAKYEKVEVEDQALSMIARAAEGSARDALSIFDQA 235


>gi|11465515|ref|NP_045094.1| cell division protein [Cyanidium caldarium]
 gi|14423719|sp|O19922|FTSH_CYACA RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|2465738|gb|AAB82667.1| unknown [Cyanidium caldarium]
          Length = 614

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 57/273 (20%), Positives = 98/273 (35%), Gaps = 23/273 (8%)

Query: 27  LEEFTGQVEACSNLK---VFIEAAKA----RAEALDHVLFVGPPGLGKTTLAQVVARELG 79
            E+  G  EA   L+    F++ ++      A     VL VGPPG GKT LA+ +A E  
Sbjct: 170 FEDVAGIEEAKEELQEIVAFLKDSRKFTNVGATIPKGVLLVGPPGTGKTLLAKAIAGEAS 229

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMED 131
             F S SG           A  +  L    +++   ++FIDEI  +       +    ++
Sbjct: 230 APFFSISGSEFVEMFVGVGASRVRDLFKKAKEKAPCIVFIDEIDAVGRQRGVGIGGGNDE 289

Query: 132 FQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            +  L  ++ E               ++AAT R+ +L + L    RF   I ++   I  
Sbjct: 290 REQTLNQLLTEMDGFSGDTG----VIVVAATNRIDVLDSALLRPGRFDRQIMVSLPNING 345

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
              I++  +K   +                +      LL              IT +  +
Sbjct: 346 RLAILKVHSKKKKIHKDVLLEVIARRTPGFSGADLANLLNEAAILTVRRGKVEITMKEIE 405

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV 280
            ++ ++     G    D R   +IA +  G  V
Sbjct: 406 DSIDKIIAGLEGSPLADSRIKRLIAYHEAGHAV 438


>gi|307174120|gb|EFN64778.1| Transitional endoplasmic reticulum ATPase TER94 [Camponotus
           floridanus]
          Length = 801

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 52/266 (19%), Positives = 86/266 (32%), Gaps = 44/266 (16%)

Query: 31  TGQVEACSNLKVFIEAAKARAEALDH--------------VLFVGPPGLGKTTLAQVVAR 76
            G  +     K   +  +     L H              +L  GPPG GKT +A+ VA 
Sbjct: 199 VGYDDIGGVRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 258

Query: 77  ELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPA 128
           E G  F   +GP I          +L       E     ++FIDE+  ++   E+     
Sbjct: 259 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAIIFIDELDAIAPKREK----- 313

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
                   +V +  +        S   ++AAT R   +   L+   RF   I +   +  
Sbjct: 314 THGEVERRIVSQLLTLMDGMKQSSHVIVMAATNRPNSIDGALRRFGRFDREIDIGIPDAT 373

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
               I++   K   LA  D    EIA  + G        L               +    
Sbjct: 374 GRLEILRIHTKNMKLA-DDVDLEEIAAETHGHVGADLASL--------------CSEAAL 418

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIA 272
                ++ +  +  D +D   L+ +A
Sbjct: 419 QQIREKMDLIDLEDDHIDAEVLSSLA 444



 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 87/242 (35%), Gaps = 20/242 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVARE 77
           T ++  G       L+  ++      +            VLF GPPG GKT LA+ +A E
Sbjct: 473 TWDDIGGLQNVKMELQELVQYPVEHPDKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANE 532

Query: 78  LGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAM 129
              NF S  GP +     G+  A + ++ D+       VLF DE+  ++      +  A 
Sbjct: 533 CQANFISVKGPELLTMWFGESEANVRDVFDKARSAAPCVLFFDELDSIAKSRGGTVGDA- 591

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                D ++ +  +            +I AT R  ++   +    R    I +   + + 
Sbjct: 592 -GGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKS 650

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            + I +   + + +A   + +    +    +      + +R    A     +T  R   +
Sbjct: 651 REAIFRANLRKSPVAKDVDLSYIAKVTHGFSGADLTEICQRACKLAIRQCIETEIRREKE 710

Query: 248 AA 249
            A
Sbjct: 711 RA 712


>gi|297622705|ref|YP_003704139.1| ATP-dependent protease La [Truepera radiovictrix DSM 17093]
 gi|297163885|gb|ADI13596.1| ATP-dependent protease La [Truepera radiovictrix DSM 17093]
          Length = 817

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 48/247 (19%), Positives = 83/247 (33%), Gaps = 40/247 (16%)

Query: 55  DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA----------------A 98
             +LF GPPG+GKT++A+ +A+ LG  +   S        D+                  
Sbjct: 363 PILLFAGPPGVGKTSIAKSIAKALGREYVRISLGGARDESDIRGHRRTYIGSMPGRIIQG 422

Query: 99  LLTNLEDRDVLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKIN 150
           +        V  +DEI +L +  +        E+L PA     +D  +G       V  +
Sbjct: 423 IRQAGTKNPVFLLDEIDKLGMSYQGDPSSALLEVLDPAQNSGFVDHYLG-------VPFD 475

Query: 151 LSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACE 210
           LS    IA       +   L DR  +    ++ E E +  I +R               E
Sbjct: 476 LSEVLFIATANYAQNIPEALLDRMELLEFSSYIEQEKI-EIAKRYL-------LPRQIEE 527

Query: 211 IAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTM 270
             ++ +      G + + +  +   A  + + R I   A         G  +  +R    
Sbjct: 528 NGLKPQQITISDGAIAKVITSYTREAGVRNLERTIGTLARKAARRIAEGESKR-VRITER 586

Query: 271 IARNFGG 277
               F G
Sbjct: 587 SLEAFLG 593


>gi|195475210|ref|XP_002089877.1| GE19324 [Drosophila yakuba]
 gi|194175978|gb|EDW89589.1| GE19324 [Drosophila yakuba]
          Length = 801

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 84/257 (32%), Gaps = 28/257 (10%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVAR 76
            T  +  G       L+  ++      +            VLF GPPG GKT LA+ +A 
Sbjct: 471 TTWTDIGGLESVKKELQELVQYPVEHPDKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIAN 530

Query: 77  ELGVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127
           E   NF S  GP +         A   D+     +     VLF DE+  ++      +  
Sbjct: 531 ECQANFISVKGPELLTMWFGESEANVRDIFDKARSAAP-CVLFFDELDSIAKARGGNVGD 589

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           A      D ++ +  +            +I AT R  ++   +    R    I +   + 
Sbjct: 590 A--GGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDD 647

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA------EVAHAK 239
           +  + I++   + + LA   +      +    +      + +R    A           +
Sbjct: 648 KSREAILKANLRKSPLAKEVDLTYIAKVTQGFSGADLTEICQRACKLAIRQAIEAEIRRE 707

Query: 240 TITREIADAALLRLAID 256
               E  ++A+     D
Sbjct: 708 KERAENQNSAMDMDEDD 724



 Score = 52.0 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/164 (23%), Positives = 62/164 (37%), Gaps = 22/164 (13%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARA--------EALDHVLFVGPPGLGKTTLAQVVARELG 79
           ++  G  +  + +K  +E              +    +L  GPPG GKT +A+ VA E G
Sbjct: 201 DDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVANETG 260

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMED 131
             F   +GP I          +L       E     ++FIDEI  ++   ++        
Sbjct: 261 AFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAIIFIDEIDAIAPKRDKTHGEVERR 320

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
               L+       +S     S   ++AAT R   +   L+ RFG
Sbjct: 321 IVSQLLTLMDGMKKS-----SHLIVMAATNRPNSIDPALR-RFG 358


>gi|195120371|ref|XP_002004702.1| GI19458 [Drosophila mojavensis]
 gi|193909770|gb|EDW08637.1| GI19458 [Drosophila mojavensis]
          Length = 801

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 84/257 (32%), Gaps = 28/257 (10%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVAR 76
            T  +  G       L+  ++      +            VLF GPPG GKT LA+ +A 
Sbjct: 471 TTWTDIGGLENVKKELQELVQYPVEHPDKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIAN 530

Query: 77  ELGVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127
           E   NF S  GP +         A   D+     +     VLF DE+  ++      +  
Sbjct: 531 ECQANFISVKGPELLTMWFGESEANVRDIFDKARSAAP-CVLFFDELDSIAKARGGNVGD 589

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           A      D ++ +  +            +I AT R  ++   +    R    I +   + 
Sbjct: 590 A--GGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDD 647

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA------EVAHAK 239
           +  + I++   + + LA   +      +    +      + +R    A           +
Sbjct: 648 KSREAILKANLRKSPLAKEVDLTYIAKVTQGFSGADLTEICQRACKLAIRQAIEAEIRRE 707

Query: 240 TITREIADAALLRLAID 256
               E  ++A+     D
Sbjct: 708 KDRAENQNSAMDMDEDD 724



 Score = 52.0 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 48/254 (18%), Positives = 84/254 (33%), Gaps = 31/254 (12%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARA--------EALDHVLFVGPPGLGKTTLAQVVARELG 79
           ++  G  +  + +K  +E              +    +L  GPPG GKT +A+ VA E G
Sbjct: 201 DDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVANETG 260

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMED 131
             F   +GP I          +L       E     ++FIDEI  ++   ++        
Sbjct: 261 AFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAIIFIDEIDAIAPKRDKTHGEVERR 320

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ-----DRFGIPIRLNFYEIE 186
               L+       +S     S   ++AAT R   +   L+     DR       +     
Sbjct: 321 IVSQLLTLMDGMKKS-----SHLIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRL 375

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGT-----PRIAGRLLRRVRDFAEVAHAKTI 241
           ++  I  +  KL      ++ A E                A + +R   D  ++   K  
Sbjct: 376 EVLRIHTKNMKLHEDVDLEQIAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDKID 435

Query: 242 TREIADAALLRLAI 255
              +A  A+     
Sbjct: 436 AEVLASLAVTMENF 449


>gi|166366513|ref|YP_001658786.1| cell division protein [Microcystis aeruginosa NIES-843]
 gi|166088886|dbj|BAG03594.1| cell division protein [Microcystis aeruginosa NIES-843]
          Length = 614

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 86/227 (37%), Gaps = 27/227 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALD--------HVLFVGPPGLGKTTLAQVVARE 77
           +L++  G  E    LK  I     R + L          VL VGPPG GKT  A+ +A E
Sbjct: 92  SLKDVGGLTEVIKELKELIAIPLKRPDLLAKLGLEPTRGVLLVGPPGTGKTLTARALAEE 151

Query: 78  LGVNFRSTSGP-VIAK-----AGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
           LGVN+ +  GP VI+K        L  +          ++FIDEI  ++    +     +
Sbjct: 152 LGVNYIALVGPEVISKYYGEAEQKLRGIFEKASKNAPCIVFIDEIDSMAPDRSK-----V 206

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
           E      +V +               ++AAT R   L   L+   RF   +     + + 
Sbjct: 207 EGEVEKRLVAQLLGLMDGFAQSQGVIVLAATNRPDHLDPALRRPGRFDREVLFRVPDRKG 266

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
              I+Q    +   ++  + +  + + +       G  L+ V   A 
Sbjct: 267 RLEILQ----ILTRSMPLDESVSLDLIADNAVGFVGSDLKAVCQKAA 309



 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/160 (25%), Positives = 61/160 (38%), Gaps = 19/160 (11%)

Query: 28  EEFTGQVEACSNLKVFIEAA--------KARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +   G  +    L+  +E A        + +A+A   +L  GPPG GKT LA+ VA +  
Sbjct: 360 DNIGGLEQIKQTLQESVEGALLHPQLYTQTKAQAPKGILLWGPPGTGKTLLAKAVASQAR 419

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMED 131
            NF S +GP +      A    +  L          V+FIDEI  L+             
Sbjct: 420 ANFISINGPELLSKWVGASEQAVRELFAKARQAAPCVVFIDEIDTLAPARGRYSGD---S 476

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
              D +VG+  +        +   +I AT R   L   L 
Sbjct: 477 GVSDRVVGQILTELDGLQTAATILVIGATNRPDALDPALL 516


>gi|157165121|ref|YP_001467001.1| DNA polymerase III subunits gamma and tau [Campylobacter concisus
           13826]
 gi|112800927|gb|EAT98271.1| DNA polymerase III subunit tau [Campylobacter concisus 13826]
          Length = 554

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 63/213 (29%), Gaps = 38/213 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP+  +E  GQ     +L   ++  +         LF G  G GKT+ A++ A+
Sbjct: 3   ALALKYRPKNFDELIGQEAVSKSLTHALDENRVSHAY----LFSGLRGSGKTSSARIFAK 58

Query: 77  E------------------------LGVNFRSTSGPVIAKAGDLAALLTNLE------DR 106
                                      ++          K  D+  L+   +        
Sbjct: 59  ALVCEKGPTSRPCEVCAQCVMANESRHMDIIEMDAASHRKIDDIRELIEQTKYAPTAARY 118

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164
            +  IDE+H L+      L   +E+    +  ++      +     LSR           
Sbjct: 119 KIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPTTVLSRTQHFRFKQISR 178

Query: 165 LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
                  + F +      YE E L  I+ R   
Sbjct: 179 YEIVKHLE-FILSKEGVSYEREAL-EILARSGG 209


>gi|327402293|ref|YP_004343131.1| ATP-dependent protease La [Fluviicola taffensis DSM 16823]
 gi|327317801|gb|AEA42293.1| ATP-dependent protease La [Fluviicola taffensis DSM 16823]
          Length = 808

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 55/265 (20%), Positives = 97/265 (36%), Gaps = 37/265 (13%)

Query: 32  GQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           G  +    +  ++   K + +    +L F GPPG+GKT+L + VA  LG  +   S   +
Sbjct: 359 GLEKVKERILEYLAVLKLKGDMKSPILCFYGPPGVGKTSLGKSVAEALGRKYVRMSLGGV 418

Query: 91  AKAGDLAALLTNL----------------EDRDVLFIDEIHRLSI--------IVEEILY 126
               ++                           V  +DEI +L           + E+L 
Sbjct: 419 HDEAEIRGHRKTYIGAMPGRVIQHLKKAGSANPVFVLDEIDKLGRSNHGDPSSALLEVLD 478

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           P       D  V         + +LS+   IA    +  +  PL DR  I I +N Y IE
Sbjct: 479 PEQNSSFYDNYVE-------TEFDLSKVMFIATANNLSSVQGPLLDRMEI-IEVNGYTIE 530

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +   I    AK   L    EA      +     +   R++    + + V        ++A
Sbjct: 531 EKIEI----AKKHLLPKQLEAHGITKKQLVVDRKTLERIVENYTNESGVRGLDKKLAKLA 586

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMI 271
                ++A+++   +++D+  LT I
Sbjct: 587 RHRAKQVALEEKFDEKIDVEELTTI 611


>gi|326790232|ref|YP_004308053.1| anti-sigma H sporulation factor, LonB [Clostridium lentocellum DSM
           5427]
 gi|326540996|gb|ADZ82855.1| anti-sigma H sporulation factor, LonB [Clostridium lentocellum DSM
           5427]
          Length = 547

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 50/261 (19%), Positives = 86/261 (32%), Gaps = 56/261 (21%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV--- 73
                +RP++ ++  GQ +    LK+ +        +  H+L  G PG+GKT  A++   
Sbjct: 57  PLSEKVRPKSEKDIIGQADGLQALKIAL-----CGPSPQHILIYGSPGIGKTAAARIALD 111

Query: 74  VARELGVNFRSTSGPVIAK-----AGDLAAL----------------------------- 99
           +A+E   +    +   I         D  ++                             
Sbjct: 112 IAKESPGSPFKRNAKFIEIDATTLRFDERSIADPLMGSVHDPIYQGAGAYGPAGVPQPKP 171

Query: 100 --LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL----------DLMVGEGPSARSV 147
             +T      VLFIDEI  L  +    L   +ED ++          D  + +       
Sbjct: 172 GAVTKAHGG-VLFIDEIGELHQVQMNKLLKVLEDRKVFLESSYYSESDENIPKDIHDVFK 230

Query: 148 KINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEA 207
               + F LI ATTR      P        I       +D++ IV   A    + +    
Sbjct: 231 NGLPADFRLIGATTRNPEDIPPALRSRCTEIFFKDLSYDDIRAIVDNVAAREKMTIV-GE 289

Query: 208 ACEIAMRSRGTPRIAGRLLRR 228
           A E+  +     R A  +L+ 
Sbjct: 290 AKELIGQYAYNGRDAVNMLQT 310


>gi|255348697|ref|ZP_05380704.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis
           70]
 gi|255503237|ref|ZP_05381627.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis
           70s]
 gi|255506915|ref|ZP_05382554.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis
           D(s)2923]
 gi|289525374|emb|CBJ14851.1| DNA polymerase III subunit gamma/tau [Chlamydia trachomatis
           Sweden2]
 gi|296434926|gb|ADH17104.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis
           E/150]
 gi|296438646|gb|ADH20799.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis
           E/11023]
          Length = 466

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 51/253 (20%), Positives = 87/253 (34%), Gaps = 24/253 (9%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
              RP    E  GQ    S LK  +   +A        +F G  G GKTTLA+V A+ L 
Sbjct: 9   RRYRPNNFSEILGQDIVVSILKNSLRLNRAAHAY----IFSGIRGTGKTTLARVFAKALN 64

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHR-----LSIIVEEILYPAMEDFQL 134
               +       +      +       DV+ ID         +  I E +L+   +    
Sbjct: 65  CQNPTQDQEPCNQCAICKEISLGTSM-DVIEIDGASHRGIEDIRQINETVLFVPSKSRYK 123

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             ++ E             ++++   +      ATT +  + N +  R    +       
Sbjct: 124 IYIIDEVHMLTKEAFNSLLKTLEEPPAHVKFFLATTEIAKIPNTISSRCQKMLLKRI-SE 182

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           E +   +   AK  G   + EA   IA  ++G+ R A  L   V         +++  + 
Sbjct: 183 ETIIDKLATIAKQEGTETSREALLPIAKAAQGSLRDAESLYDYVVGLFP----ESLDPDS 238

Query: 246 ADAALLRLAIDKM 258
              AL  L+ D +
Sbjct: 239 TAKALGILSEDSL 251


>gi|288869580|ref|ZP_05975070.2| AAA family ATPase [Methanobrevibacter smithii DSM 2374]
 gi|288861611|gb|EFC93909.1| AAA family ATPase [Methanobrevibacter smithii DSM 2374]
          Length = 740

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 46/195 (23%), Positives = 74/195 (37%), Gaps = 23/195 (11%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALD--------HVLFVGPPGLGKTTLAQVVARELG 79
           E+  G  +    ++  IE    R E  D         VL  GPPG GKT LA+ VA E  
Sbjct: 213 EDIGGLKDEVKKVREMIEIPLKRPELFDKLGIAPPKGVLMHGPPGTGKTLLAKAVASESD 272

Query: 80  VNFRSTSGPVIAKA------GDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAMED 131
            +F + +GP I          +L       E+    ++FIDE+  ++   E+        
Sbjct: 273 AHFIAINGPEIMSKYVGGSEENLREYFEEAEENAPSIIFIDELDAIAPKREDTQGETERR 332

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
               L+            +  +  +I AT R   L   L+   RF   I +   + E+ +
Sbjct: 333 TVAQLLT-----LMDGLKSRGQVVVIGATNRPDSLDQALRRPGRFDREIEIGVPDSEERE 387

Query: 190 TIVQRGAKLTGLAVT 204
            I++   +   LA  
Sbjct: 388 EILEIHTRNMPLAED 402



 Score = 45.1 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 40/184 (21%), Positives = 64/184 (34%), Gaps = 21/184 (11%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARELG 79
           ++  G  +    LK  +E      E             L  G PG GKT LA+ VA E  
Sbjct: 485 DDVGGLDDVKQELKEAVEWPLKHPEKFEKFGVRPPKGTLLYGVPGTGKTLLAKAVASESE 544

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAMED 131
            NF S  GP +           +  +    +     V+F DEI  ++           + 
Sbjct: 545 ANFISIKGPELLSKWVGESEQGVREVFRKAKQTAPTVIFFDEIDSIASTRSAN---DSDS 601

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
                +V +  +       L    +IAAT R  +L   L    RF   I+++    +   
Sbjct: 602 GVTKRVVNQLLTEMDGLEELEDVAIIAATNRPDILDAGLMRPGRFDRHIKVDLPNEDARL 661

Query: 190 TIVQ 193
           +I +
Sbjct: 662 SIFK 665


>gi|308272158|emb|CBX28765.1| Cell division protease ftsH [uncultured Desulfobacterium sp.]
          Length = 609

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 57/261 (21%), Positives = 95/261 (36%), Gaps = 26/261 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T E+  G  EA   L   +E  K               VL +GPPG GKT LA+ +A E 
Sbjct: 151 TFEDVAGIEEAKEELSEIVEFLKEPKKYTRLGGRIPKGVLLMGPPGTGKTLLARAIAGEA 210

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG       V   A  +  L    +     ++FIDEI  +       L    +
Sbjct: 211 GVPFFSISGSDFVEMFVGVGASRVRDLFIQGKKNAPCIIFIDEIDAVGRHRGAGLGGGHD 270

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E     S +       LI+AT R  +L   L    RF   + ++  +I+
Sbjct: 271 EREQTLNQLLVEMDGFESNEG----VILISATNRPDVLDPALLRPGRFDRQVVVSLPDIK 326

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I+Q   K + ++               +      L+     +A   +   +     
Sbjct: 327 GREKILQVHMKKSPISADVTPLVLAKGTPGFSGADLENLVNEAALYAAKRNKDKVEMIDF 386

Query: 247 DAALLRLAIDKMGFDQLDLRY 267
           + A  ++    MG ++     
Sbjct: 387 EDAKDKVY---MGLERKSKVI 404


>gi|306834998|ref|ZP_07468047.1| possible DNA polymerase III subunits gamma and tau [Corynebacterium
           accolens ATCC 49726]
 gi|304569118|gb|EFM44634.1| possible DNA polymerase III subunits gamma and tau [Corynebacterium
           accolens ATCC 49726]
          Length = 895

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 76/220 (34%), Gaps = 27/220 (12%)

Query: 32  GQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA 91
           GQ +  + L   ++A +         LF GP G GKT+ A+++AR L        GP   
Sbjct: 2   GQEQVTTPLSAALDAGRINHAY----LFSGPRGCGKTSSARIMARSLNCEH----GPTST 53

Query: 92  KAGDLAALLTNLEDR----DVLFIDEIHRLSIIVEEILY------PAMEDFQLDLM---- 137
             G   + ++         DV  +D      +     L       PA   +++ ++    
Sbjct: 54  PCGKCDSCVSLAPGGPGNLDVTELDAASHNGVEDMRELRDRAYYAPAESRYRIFIIDEAH 113

Query: 138 ----VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
                G     + V+        I ATT    +   ++ R              +K ++Q
Sbjct: 114 MISPSGANALLKVVEEPPEHVIFIFATTEPEKIIGTIRSR-THHYPFRLLTPPAMKGLLQ 172

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
           R     G+ V D     +     G+PR    LL ++   A
Sbjct: 173 RTVASEGVQVEDAVYPMVIEAGGGSPRDTLSLLDQLLAGA 212


>gi|300681251|sp|A3M072|LONM_PICST RecName: Full=Lon protease homolog, mitochondrial; Flags: Precursor
          Length = 1086

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 94/245 (38%), Gaps = 36/245 (14%)

Query: 32  GQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           G  +    +  FI   +   +    +L   GPPG GKT++A+ +A  L   +   +   I
Sbjct: 528 GLKDVKDRILEFISMGRVSGKVDGKILCLTGPPGTGKTSIAKSIAESLNRKYVRIAMGGI 587

Query: 91  AKAGDLA------------ALLTNLED----RDVLFIDEIHRL--------SIIVEEILY 126
               ++              +++ L+       ++ IDEI +L        S    EIL 
Sbjct: 588 QDVHEVKGHRRTYVGSIPGRIISALKQAKTSNPLMLIDEIDKLDLSRSGGASSAFLEILD 647

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           P   +  +D  +        VK++LS+   +     +G ++ PL+DR  I I +N Y   
Sbjct: 648 PEQNNAFVDNYI-------DVKVDLSKVLFVCTANYLGNISPPLRDRMEI-IEVNGYTNN 699

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +   I +R           +A  E       T  I+  + +  R+       K ITR  +
Sbjct: 700 EKIEIAKRH---LIPDAAKKAGLEGGHVVIETKTISRLIEKYCRESGLRNIKKLITRIFS 756

Query: 247 DAALL 251
            A+L 
Sbjct: 757 KASLK 761


>gi|258545555|ref|ZP_05705789.1| conserved hypothetical protein [Cardiobacterium hominis ATCC 15826]
 gi|258519255|gb|EEV88114.1| conserved hypothetical protein [Cardiobacterium hominis ATCC 15826]
          Length = 636

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 70/225 (31%), Gaps = 22/225 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+   E  GQ      L   ++        + H  LF G  G+GKTT+A++ A+ L   
Sbjct: 10  RPKNFHELVGQTHVTQALTYALD-----HNRIHHAYLFTGTRGVGKTTIARIFAKSLNCQ 64

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP-----AMEDFQLDL 136
               S     +      +       D++ +D   R  +     L        ++      
Sbjct: 65  KNHVSSNPCGECDHCKEIDQGRFP-DLIEVDAASRSRVEETRELLDNVPYAPVKGQYKVY 123

Query: 137 MVGEGPSARSVKIN---------LSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           ++ E     +   N               I ATT    L   +  R  +   L       
Sbjct: 124 LIDEVHMFSASSFNALLKTLEEPPPHVKFILATTDPQKLPATILSRC-LQFHLKNMSERQ 182

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           +   +    +        +A   +A  + G+ R +  LL +   +
Sbjct: 183 ISEHLAHILQAEHAEYEPDALHLLANAAAGSMRDSLSLLDQALAY 227


>gi|296108730|ref|YP_003615679.1| AAA family ATPase, CDC48 subfamily [Methanocaldococcus infernus ME]
 gi|295433544|gb|ADG12715.1| AAA family ATPase, CDC48 subfamily [Methanocaldococcus infernus ME]
          Length = 903

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 65/305 (21%), Positives = 100/305 (32%), Gaps = 48/305 (15%)

Query: 15  EDADISLLR------PR-TLEEFTGQVEACSNLKVFIEAAKARAEALD--------HVLF 59
           +D + S +R      P    E+  G  E    L+  +E      +  D         VL 
Sbjct: 432 KDVEPSAMREVLVEVPNVKWEDIGGLEEVKQELREAVEWPLKAKDVFDKIGVRPPKGVLL 491

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFI 111
            GPPG GKT LA+ VA E G NF S  GP I           +  +          ++F 
Sbjct: 492 FGPPGTGKTLLAKAVANEAGANFISVKGPEIFSKWVGESEKAIREIFKKARQNAPCIIFF 551

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPL- 170
           DEI  ++          +     D +V +  +            +IAAT R  ++   L 
Sbjct: 552 DEIDAIAPKR----GRDISSGVTDKVVNQILTELDGLEEPKDVVVIAATNRPDIIDPALL 607

Query: 171 ----QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
                DR  +    +     D+  I  RG  L      D    E+A   + T    G  +
Sbjct: 608 RPGRLDRIILVPVPDEKARLDIFKIHTRGMSL----AEDVDLEELA---KKTEGYTGADI 660

Query: 227 RRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETIS 286
             V   A +   +    E  D       +         + YL  I+  F    V + ++ 
Sbjct: 661 EAVCREAAMLAVREGIGEPWDIEKDLREL---------INYLQAISGAFRALAVELNSVI 711

Query: 287 AGLSE 291
               E
Sbjct: 712 KATKE 716



 Score = 56.6 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 52/197 (26%), Positives = 73/197 (37%), Gaps = 23/197 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
           T E+  G  E    ++  IE      E            VL VGPPG GKT LA+ VA E
Sbjct: 177 TYEDIGGLKEEVRKVREMIELPMKHPELFEKLGIEPPKGVLLVGPPGTGKTLLAKAVANE 236

Query: 78  LGVNFRSTSGPVIAKA------GDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM 129
            G NF   +GP I          +L  +    E+    ++FIDEI  ++   +E      
Sbjct: 237 AGANFYVINGPEIMSKYVGETEENLRKIFEEAEENAPSIIFIDEIDAIAPKRDEATGEVE 296

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                 L+               +  +I AT R   L   L+   RF   I +   + E 
Sbjct: 297 RRLVAQLLT-----LMDGLKGRGQVVVIGATNRPDALDPALRRPGRFDREIVIGVPDREG 351

Query: 188 LKTIVQRGAKLTGLAVT 204
            K I+Q   +   LA  
Sbjct: 352 RKEILQIHTRNMPLAED 368


>gi|229583244|ref|YP_002841643.1| Microtubule-severing ATPase [Sulfolobus islandicus Y.N.15.51]
 gi|228013960|gb|ACP49721.1| Microtubule-severing ATPase [Sulfolobus islandicus Y.N.15.51]
          Length = 606

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 55/251 (21%), Positives = 86/251 (34%), Gaps = 26/251 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIE--------AAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           T  +  G  +A   +K +IE        A K   +    +L  GPPG GKT + + +A E
Sbjct: 59  TWNDIGGYEDAKKEIKEYIELPLKNRDIAMKYGLKPPKGMLLFGPPGCGKTMMMRALANE 118

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
             +NF   +   I           L  L  N       +LF DEI  + +  E     ++
Sbjct: 119 SKLNFLYVNISDIMSKWYGESEARLRELFNNARKNSPCILFFDEIDTIGVKRESHTGDSV 178

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
               L LM+ E     S         ++ +T    +L   L    RF   I +     E 
Sbjct: 179 TPRLLSLMLSEIDGLHSEDG----VIVVGSTNVPQMLDKALLRAGRFDKLIYIGPPNKEA 234

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            K I+Q   K   LA       +    +  T R +G  L  +   A    A     + A 
Sbjct: 235 RKQILQIHCKGKPLAED----VDFDKLAEITERYSGADLANLCQEAARKVASEAIEKGAY 290

Query: 248 AALLRLAIDKM 258
             +      ++
Sbjct: 291 RKITMADFIEL 301



 Score = 51.6 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 78/234 (33%), Gaps = 28/234 (11%)

Query: 35  EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI---- 90
           +    LKV           +  +L  GPPG+GKT +A+ +A+ L V   + SG  I    
Sbjct: 368 KLLEQLKV---------PPIRGILLYGPPGVGKTMMAKALAKTLNVKLIALSGAEIMYKG 418

Query: 91  --AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARS 146
                  +  +     +    ++ +DE+  ++       Y         L+         
Sbjct: 419 YEGAIAAIKEVFNRARENKPAIVLLDELDAIASKRNYKSYTDSSRIVNQLLTE-----MD 473

Query: 147 VKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVT 204
              +L    +I  T R+  +   L    RF   I +     E+   I+ +          
Sbjct: 474 GIRSLKEVVVIGTTNRLKAIDPALLRPGRFDKIIHMPLPNREERLDILMKYIGKEECEKV 533

Query: 205 DEA--ACEIAMRSRGTPRIAGR--LLRRVRDFAEVAHAKTITREIADAALLRLA 254
           D    A +    S        R   ++ ++        +T+T+E    AL ++ 
Sbjct: 534 DCGILAEQTEGYSGADLSALAREAKMKVLKSILRGESNRTLTKEDLIDALNKIH 587


>gi|21227528|ref|NP_633450.1| replication factor C small subunit 2 [Methanosarcina mazei Go1]
 gi|20905906|gb|AAM31122.1| replication factor C subunit [Methanosarcina mazei Go1]
          Length = 341

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 71/322 (22%), Positives = 117/322 (36%), Gaps = 47/322 (14%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           +D      R  TLE   G   A   L   +++       L H++F GP   GKTT A  +
Sbjct: 2   QDLWTLKYRADTLERLLGNEHAVKTLSELVQS-----RTLPHLIFYGPENSGKTTAALAL 56

Query: 75  AR-----ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFI--DEIHRLSIIVEEI--- 124
           AR         NF   +       G    +    + R V FI  D+  ++   V +I   
Sbjct: 57  ARQLYGDTWKNNFAYFNASDFFNQGKRYLVR---DRRFVRFIGTDDPKKIYKSVIDIFKE 113

Query: 125 -------LYPAMEDFQLDLMVGEGPSARSVKINLSR--------FTLIAATTRVGLLTNP 169
                  + P   D++L  +      +   +  L R           I +TTR   L +P
Sbjct: 114 IINEYAGMAPLDADYKLIYIDNAESLSSDAQHALRRIMEKYSATCRFILSTTRPSKLISP 173

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           L+ R G+ +   +     +K  ++R A    L ++D A   I   S+G    A + L+  
Sbjct: 174 LRSR-GLQVFFAYVSDSLVKPHLERIALSEDLELSDGALDAILYLSKGNIARAVQTLQLA 232

Query: 230 RDFAEVAHAKTITREIADAALLRLAIDKM---------GFDQLDLRYL-TMIARNFGGGP 279
              AE A    IT EI   A ++   + +         G      + +  MI      G 
Sbjct: 233 ALKAESA---EITEEIVFEATMKGRDETVDSLLEAALAGDFPRGRQLIDEMIIEKGLSGT 289

Query: 280 VGIETISAGLSEPRDAIEDLIE 301
             +E +S  L +  +  +D+  
Sbjct: 290 DILEGLSEALIDSGERDKDVAR 311


>gi|325120488|emb|CBZ56042.1| ATP-dependent metalloprotease involved in cell division, related
           [Neospora caninum Liverpool]
          Length = 996

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 55/208 (26%), Positives = 75/208 (36%), Gaps = 19/208 (9%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA------KAGDLAALLTNLEDRD--V 108
           +L  GPPG GKT LA+ +A E GV F   SG           A  L  L          +
Sbjct: 450 ILLQGPPGTGKTLLARAIAGEAGVPFIHASGSEFEEMFVGVGASRLRQLFAEARRLSPCI 509

Query: 109 LFIDEIHRL--SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
           LFIDEI  L     + E          L+ ++ E    +         TL+ AT  +  L
Sbjct: 510 LFIDEIDALGGKRTLTENK---HHRQTLNQLLTELDGFKPSDG----VTLVCATNLLEAL 562

Query: 167 TNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGR 224
              L    R    I + F   ++   I+Q  AK   LA   +     A+ S  T      
Sbjct: 563 DPALTRPGRIDRIIHVPFPSKKERIEILQHYAKEMPLATDVDLEILAALTSGMTGADLAN 622

Query: 225 LLRRVRDFAEVAHAKTITREIADAALLR 252
           LL      A     + +TR   D +  R
Sbjct: 623 LLNFAAIRAATEGKEQVTRAEVDESFDR 650


>gi|308474132|ref|XP_003099288.1| CRE-CDC-48.3 protein [Caenorhabditis remanei]
 gi|308267427|gb|EFP11380.1| CRE-CDC-48.3 protein [Caenorhabditis remanei]
          Length = 728

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 58/291 (19%), Positives = 94/291 (32%), Gaps = 44/291 (15%)

Query: 21  LLRPRTLEEFT------------GQVEACSNLKVFI-------EAAKARA-EALDHVLFV 60
            +RP  + +F             G  E    ++  +       EA +    +    +L  
Sbjct: 444 RIRPTGIRQFILEVPNVSWQDIGGNEELKLEIQQAVIWPQKHPEAFERFGIDPPAGILLY 503

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLAALLTNLEDR------DVLFID 112
           GPPG  KT +A+ +A E  +NF +  GP +     GD    + +L  R       ++F D
Sbjct: 504 GPPGCSKTLIARALANEAKMNFLAVKGPELFSKWVGDSEKAIRDLFSRARQVAPTIVFFD 563

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPL-- 170
           EI  +           + D  L  ++ E           SR  L+AAT R   L + L  
Sbjct: 564 EIDAVGSSRGSEKSSGVSDRVLAQLLTELDGLEKS----SRVVLLAATNRPDQLDSALLR 619

Query: 171 ---QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
               DR              +  +  R  K      T +   E      G   +A     
Sbjct: 620 PGRLDRAIYVGLPCEVTRRAILEMRTRKMKFEDPTSTIQKLVEKTSGYSGAELVAVCRTA 679

Query: 228 RVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
            +    E   A  +  +  + AL+ +             YL  I  +F  G
Sbjct: 680 AMFAMRESIEASVVQWKHFEEALVAVVSRTEA-------YLLEIYEDFKAG 723


>gi|156035707|ref|XP_001585965.1| hypothetical protein SS1G_13057 [Sclerotinia sclerotiorum 1980]
 gi|154698462|gb|EDN98200.1| hypothetical protein SS1G_13057 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 650

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 87/244 (35%), Gaps = 25/244 (10%)

Query: 22  LRP--RTLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLA 71
           LRP      +  GQ +    +++ IE      E +          +L  GPPG  KT  A
Sbjct: 380 LRPPKVKWSDIGGQDKVKEAIQLAIETPFHYQEIMQDFGRSPTKGLLLYGPPGCSKTLTA 439

Query: 72  QVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DVLFIDEIHRLSIIVEE 123
           Q VA E+G NF +  G  +     GD    + N+  R       ++F DEI  +      
Sbjct: 440 QAVATEMGFNFFAVKGAELLSKYVGDSERAVRNIFSRARAAAPSIIFFDEIESIG----- 494

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLN 181
                        ++    +      +L   T++AAT +   L   L    RF   I + 
Sbjct: 495 GKRDGKNSNNGVNVLTTLLNEMDGIESLKGVTVLAATNKPQDLDLALLRPGRFDELIYVA 554

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
             ++   + I++   + + +A   + A    +    +      + ++  D A     K  
Sbjct: 555 PPDLAGREAIIRARQRESTMAKDVDIAELARLTEGYSGAEMVSICQKAFDAAIERRKKNA 614

Query: 242 TREI 245
           T E 
Sbjct: 615 TMEP 618


>gi|326528909|dbj|BAJ97476.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1174

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 79/234 (33%), Gaps = 25/234 (10%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           VS + +     RPR+  E  GQ     +L   I     R       LF GP G GKT+ A
Sbjct: 402 VSDQRSLSQKYRPRSYHEIVGQNFVVQSLSNAI----IRERIAPAYLFHGPRGTGKTSAA 457

Query: 72  QVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-------EIHRLSIIVEEI 124
           ++ +  L       + P     G             +  I+        I+R+  ++E I
Sbjct: 458 RIFSAALSCTANGENKP----CGVCMECNDFFSGNGINLIEVDASNKKGINRIRHLIENI 513

Query: 125 LYPAMEDFQLDLMVGEGPSARS---------VKINLSRFTLIAATTRVGLLTNPLQDRFG 175
              A        +V E     S         +   L     I  T     L   +  R  
Sbjct: 514 PASATSSRYKVFVVDECHMVSSKVWSAFMKFLDEPLPHVVFIFITIDPENLPRAVISRCQ 573

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
             +     +I+ +   +++ A    L +   A   IA+ S G+ R A  +L ++
Sbjct: 574 KYMFSKIKDIDIVCR-LRKIAVKETLDIELAALDLIALNSDGSLRDAETMLDQL 626


>gi|320101277|ref|YP_004176869.1| AAA family ATPase, CDC48 subfamily [Desulfurococcus mucosus DSM
           2162]
 gi|319753629|gb|ADV65387.1| AAA family ATPase, CDC48 subfamily [Desulfurococcus mucosus DSM
           2162]
          Length = 730

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 48/242 (19%), Positives = 86/242 (35%), Gaps = 27/242 (11%)

Query: 24  PR-TLEEFTGQVEACSNLKVFIEAA--------KARAEALDHVLFVGPPGLGKTTLAQVV 74
           PR T ++  G       ++  IE          K   +    +L  GPPG GKT LA+ +
Sbjct: 170 PRVTFDDIGGLGNVIDKIREMIEIPLKYRKVFRKLGVDPPKGILLYGPPGTGKTLLAKAL 229

Query: 75  ARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD-----VLFIDEIHRLSIIVEE 123
           A E+   F + +GP I           L  +      +      ++FIDEI  ++   +E
Sbjct: 230 ANEVNAYFITINGPEIMSKYYGESEQRLREIFKLARKKSKKNPAIIFIDEIDAIAPKRDE 289

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLN 181
           ++           +V +  +      +     +IAAT R   L   L+   RF   I + 
Sbjct: 290 VIGEVERR-----VVAQLLALMDGLESRGNVIVIAATNRPNALDPALRRPGRFDREIEIP 344

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
             + +    I++   +            ++A  +  T    G  L  +   A +   +  
Sbjct: 345 MPDKKGRLEILKIHTRRLSELGVLSRDVDLAKIAEITHGYTGADLAALVKEAVLHAIRRQ 404

Query: 242 TR 243
            R
Sbjct: 405 VR 406



 Score = 50.5 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 54/226 (23%), Positives = 85/226 (37%), Gaps = 26/226 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
              +  G  E   +L+  +E      E            VL  GPPG GKT LA+ VA E
Sbjct: 453 RWSDIGGLEEVKRSLRENVELPLKHPEIYEKYGIKPPKGVLLYGPPGCGKTLLAKAVATE 512

Query: 78  LGVNFRSTSGP-VIAK-AGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAM 129
            G NF +  GP V++K  G+    +  +  +       V+F DEI  ++ +        +
Sbjct: 513 SGANFIAVKGPEVLSKWVGESEKAVREIFRKARLYAPVVVFFDEIDAIASLRGIDTDSGV 572

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            +  +  +V E          L    ++AAT R  LL   L    RF   I +   +   
Sbjct: 573 SERVVTQLVTE----MDGVQKLENVVVLAATNRPDLLDPALLRPGRFDKLIYVPPPDYNA 628

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
              I++   +   L        ++A  +R T   +G  L  V   A
Sbjct: 629 RLEILRVHTRSVPLDRD----VDLAELARSTEGYSGADLEAVVREA 670


>gi|312282199|dbj|BAJ33965.1| unnamed protein product [Thellungiella halophila]
          Length = 697

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 56/274 (20%), Positives = 95/274 (34%), Gaps = 23/274 (8%)

Query: 26  TLEEFTG-----QV--EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G     Q   E    LK         A     VL +GPPG GKT LA+ +A E 
Sbjct: 227 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAVGARIPKGVLLIGPPGTGKTLLAKAIAGEA 286

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG           A  +  L    ++    ++F+DEI  +       +    +
Sbjct: 287 GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGND 346

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E               ++AAT R  +L + L    RF   + ++  +I+
Sbjct: 347 EREQTLNQLLTEMDGFEGNTG----IIVVAATNRADILDSALLRPGRFDRQVSVDVPDIK 402

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
               I++  A                     +      LL      A       I  +  
Sbjct: 403 GRTDILKVHAGNKKFENDVSLEVIAMRTPGFSGADLANLLNEAAILAGRRGKTAIASKEI 462

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV 280
           D ++ R+     G    D +  +++A +  G  V
Sbjct: 463 DDSIDRIVAGMEGTVMTDSKSKSLVAYHEVGHAV 496


>gi|302841647|ref|XP_002952368.1| hypothetical protein VOLCADRAFT_105496 [Volvox carteri f.
           nagariensis]
 gi|300262304|gb|EFJ46511.1| hypothetical protein VOLCADRAFT_105496 [Volvox carteri f.
           nagariensis]
          Length = 1104

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 54/260 (20%), Positives = 92/260 (35%), Gaps = 25/260 (9%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAE-------ALDHVLFVGP 62
           +   +++     +R  T ++  G  EA   L+  +E  K   +           VL  GP
Sbjct: 433 KEYKKDELPEKSIR--TFKDVKGCDEAKEELREVVEFLKNPGKFTRLGAKLPKGVLLTGP 490

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIA------KAGDLAALLTNLEDRD--VLFIDEI 114
           PG GKT LA+ VA E GV F   +G           +  + AL    + R   ++FIDEI
Sbjct: 491 PGTGKTLLAKAVAGEAGVPFFYRAGSEFEELYVGVGSRRMRALFAAAKKRSPCIVFIDEI 550

Query: 115 HRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-- 172
             +    +           L+ ++ E     S         ++AAT     L   L+   
Sbjct: 551 DAIGGNRKAW--ENHTRKTLNQLLVEMDGFESTDG----IIVMAATNLPESLDPALKRPG 604

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           RF   + +   +I+  + I++       L    +           +      L+      
Sbjct: 605 RFDRQVAVPLPDIKGRRDILEYYLSDKPLGPDVDRELLARQTQGFSGADLSNLINEGAIL 664

Query: 233 AEVAHAKTITREIADAALLR 252
           A    A  IT+ + D A  +
Sbjct: 665 AAKEGADAITQRMLDWAYDK 684


>gi|237799328|ref|ZP_04587789.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331022184|gb|EGI02241.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 384

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 51/238 (21%), Positives = 75/238 (31%), Gaps = 55/238 (23%)

Query: 30  FTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVNFRSTS-- 86
             GQ      LK  I A    ++ L H  LF G  G+GKTT+A+++A+ L      TS  
Sbjct: 1   MVGQAHV---LKALINA--LDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNCETGITSTP 55

Query: 87  ----------------------GPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLS 118
                                      K  D   LL N++         V  IDE+H LS
Sbjct: 56  CGTCSVCKEIDEGRFVDLIEIDAASRTKVEDTRELLDNVQYAPSRGRFKVYLIDEVHMLS 115

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
                 L   +E+                         I ATT    L   +  R  +  
Sbjct: 116 SHSFNALLKTLEE------------------PPPYVKFILATTDPQKLPATILSRC-LQF 156

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
            L     E +   +     +  +   D+A   +   + G+ R A  L  +   F E  
Sbjct: 157 SLKNMTPERVVEHLTHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAIAFGEGK 214


>gi|161076488|ref|NP_001097250.1| TER94, isoform D [Drosophila melanogaster]
 gi|157400264|gb|ABV53746.1| TER94, isoform D [Drosophila melanogaster]
          Length = 759

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 84/257 (32%), Gaps = 28/257 (10%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVAR 76
            T  +  G       L+  ++      +            VLF GPPG GKT LA+ +A 
Sbjct: 429 TTWTDIGGLESVKKELQELVQYPVEHPDKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIAN 488

Query: 77  ELGVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127
           E   NF S  GP +         A   D+     +     VLF DE+  ++      +  
Sbjct: 489 ECQANFISVKGPELLTMWFGESEANVRDIFDKARSAAP-CVLFFDELDSIAKARGGNVGD 547

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           A      D ++ +  +            +I AT R  ++   +    R    I +   + 
Sbjct: 548 A--GGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDD 605

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA------EVAHAK 239
           +  + I++   + + LA   +      +    +      + +R    A           +
Sbjct: 606 KSREAILKANLRKSPLAKEVDLTYIAKVTQGFSGADLTEICQRACKLAIRQAIEAEIRRE 665

Query: 240 TITREIADAALLRLAID 256
               E  ++A+     D
Sbjct: 666 KERAENQNSAMDMDEDD 682



 Score = 52.0 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 50/263 (19%), Positives = 88/263 (33%), Gaps = 38/263 (14%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARA--------EALDHVLFVGPPGLGKTTLAQVVARELG 79
           ++  G  +  + +K  +E              +    +L  GPPG GKT +A+ VA E G
Sbjct: 159 DDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVANETG 218

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMED 131
             F   +GP I          +L       E     ++FIDEI  ++   ++        
Sbjct: 219 AFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAIIFIDEIDAIAPKRDKTHGEVERR 278

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
               L+       +S     S   ++AAT R   +   L+   RF   I +   +     
Sbjct: 279 IVSQLLTLMDGMKKS-----SHLIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRL 333

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            +++   K   L   D    +IA  S G        L               +       
Sbjct: 334 EVLRIHTKNMKLH-DDVDLEQIAAESHGHVGADLASL--------------CSEAALQQI 378

Query: 250 LLRLAIDKMGFDQLDLRYLTMIA 272
             ++ +  +  D++D   L  +A
Sbjct: 379 REKMDLIDLEDDKIDAEVLASLA 401


>gi|332300078|ref|YP_004441999.1| ATP-dependent metalloprotease FtsH [Porphyromonas asaccharolytica
           DSM 20707]
 gi|332177141|gb|AEE12831.1| ATP-dependent metalloprotease FtsH [Porphyromonas asaccharolytica
           DSM 20707]
          Length = 703

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 79/329 (24%), Positives = 125/329 (37%), Gaps = 60/329 (18%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  EA   L+  +E  K          +     L VGPPG GKT  A+ VA E 
Sbjct: 210 TFDDVAGLHEAKQELQEIVEFLKNPDKYTKLGGKIPKGALLVGPPGTGKTLFAKAVAGEA 269

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  L    +++   ++FIDEI  +     +    +  
Sbjct: 270 HVPFFSISGSDFVEMFVGVGASRVRDLFKQAKEKSPCIIFIDEIDAVGRARSKNAGFSSN 329

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
           D + + +            N S   ++AAT RV +L   L    RF   I ++  ++ D 
Sbjct: 330 DERENTLNQLLTEMDGFDGN-SGVIILAATNRVDILDKALLRAGRFDRQIYVDLPDLNDR 388

Query: 189 KTIV---QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           K I     +G KL      D+ A       R TP  +G  +  V                
Sbjct: 389 KEIFLVHMKGLKLGPDVSVDQLA-------RQTPGFSGADIANV---------------C 426

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE---- 301
            +AAL+    DK   ++ D  ++  + R  GG    +E  +  ++E       + E    
Sbjct: 427 NEAALIAARHDKQAIEKQD--FMDAVDRIIGG----LEKKNKIITEDERRSIAIHEAGHA 480

Query: 302 --PYMIQQG--FIQRT--PRGRLLMPIAW 324
              +M + G   ++ T  PRG   +  AW
Sbjct: 481 TISWMTEYGNPLVKVTIVPRG-KALGAAW 508


>gi|255527646|ref|ZP_05394506.1| ATP-dependent metalloprotease FtsH [Clostridium carboxidivorans P7]
 gi|296186911|ref|ZP_06855312.1| ATP-dependent metallopeptidase HflB [Clostridium carboxidivorans
           P7]
 gi|255508659|gb|EET85039.1| ATP-dependent metalloprotease FtsH [Clostridium carboxidivorans P7]
 gi|296048625|gb|EFG88058.1| ATP-dependent metallopeptidase HflB [Clostridium carboxidivorans
           P7]
          Length = 600

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 67/270 (24%), Positives = 97/270 (35%), Gaps = 37/270 (13%)

Query: 26  TLEEFTGQVEACSNL----------KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           T E+  G  E  + L          K +IE     A     VL VGPPG GKT LA+ +A
Sbjct: 157 TFEDVAGADEEKAELAEIVDFLKLPKRYIEMG---ARIPKGVLLVGPPGTGKTLLAKAIA 213

Query: 76  RELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYP 127
            E GV F S SG       V   A  +  L    +     ++FIDEI  +       L  
Sbjct: 214 GEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNSPCIIFIDEIDAVGRQRGAGLGG 273

Query: 128 AMEDFQLD----LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLN 181
             ++ +      L+  +G  A    I      +IAAT R  +L   L    RF   I + 
Sbjct: 274 GHDEREQTLNQLLVEMDGFGANEGII------MIAATNRPDILDPALLRPGRFDRQILVG 327

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
             +++  + I++   K   LA   +           T      L+      A     K I
Sbjct: 328 APDVKGREEILKVHCKNKHLAPEVKLDVLAKRTPGFTGADLENLMNESALLAVRKDKKEI 387

Query: 242 TREIADAALLRLAIDKMG----FDQLDLRY 267
             E  + A+ R+           D+ D R 
Sbjct: 388 DMEELEEAVTRVIAGPEKKSRVIDEEDRRL 417


>gi|227824800|ref|ZP_03989632.1| ATP-dependent metalloprotease ftsH [Acidaminococcus sp. D21]
 gi|226905299|gb|EEH91217.1| ATP-dependent metalloprotease ftsH [Acidaminococcus sp. D21]
          Length = 625

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/187 (24%), Positives = 78/187 (41%), Gaps = 21/187 (11%)

Query: 25  RTLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +T ++  GQ EA   L+  +             A     VL VGPPG GKT LA+ VA E
Sbjct: 164 KTFKDVAGQDEAKEALQEIVSFLHDPSRYQAIGATMPKGVLLVGPPGTGKTLLAKAVAGE 223

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
             V F S SG           A  +  L    +++   ++FIDEI  +    +   + + 
Sbjct: 224 AKVPFFSISGSEFIEMFVGMGAARVRDLFKQAQEKAPCIVFIDEIDAIGKKRDNGAFGSN 283

Query: 130 EDFQLDLMVGEGPSARSVKINLSR-FTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           ++ +  L       +     + S+   ++AAT R  +L   L    RF   + +   +++
Sbjct: 284 DEREQTL---NQLLSEMDGFDGSKGVIILAATNRPEVLDKALLRPGRFDRRVPVELPDLK 340

Query: 187 DLKTIVQ 193
             + I++
Sbjct: 341 GREAILK 347


>gi|212224243|ref|YP_002307479.1| Hypothetical CDC48/VCP [Thermococcus onnurineus NA1]
 gi|212009200|gb|ACJ16582.1| Hypothetical CDC48/VCP [Thermococcus onnurineus NA1]
          Length = 838

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 69/303 (22%), Positives = 109/303 (35%), Gaps = 30/303 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
           T E+  G  +A   ++  +E      E            VL  GPPG GKT LA+ VA E
Sbjct: 210 TYEDIGGLSDAIQKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANE 269

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM 129
              +F + +GP I           L  +  + E+    ++FIDEI  ++   EE++    
Sbjct: 270 ANAHFIAINGPEIMSKFYGESEERLREIFKDAEENAPSIIFIDEIDAIAPKREEVVGEVE 329

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
           +     L+            +  +  +IAAT R   L   L+   RF   I +   + + 
Sbjct: 330 KRVVSQLLT-----LMDGLKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKKG 384

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            K I+Q   +   L   D     +    R   R       R++   E         EI  
Sbjct: 385 RKEILQIHTRGMPLE-PDYDKVTVLKVLRELLRKETFDEERLKRLIERVEEAKSEEEIKK 443

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQ 307
                  I      +L  R L  IA    G  VG + ++A   E       ++   +I +
Sbjct: 444 VLKSESEIYPEVRTRLIDRMLEEIAEKTHG-FVGAD-LAALAREAAM----VVLRRLINE 497

Query: 308 GFI 310
           G I
Sbjct: 498 GKI 500



 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/184 (22%), Positives = 67/184 (36%), Gaps = 23/184 (12%)

Query: 28  EEFTGQVEACSNLKVFIE--------AAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           E+  G  E    L+  +E          +   +    VL  GPPG GKT LA+ VA E  
Sbjct: 547 EDIGGLDEVKQELREAVEWPLKYPKAFQRLGIDPPRGVLLYGPPGTGKTLLAKAVATESE 606

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAMED 131
            NF    GP +           +  +          V+FIDEI  ++      +     +
Sbjct: 607 ANFIGIRGPEVLSKWVGESEKRIREIFRKARQAAPTVIFIDEIDAIAPARGSDM-----N 661

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
              D ++ +  +        S   +IAAT R  ++   L    RF   I +   + +   
Sbjct: 662 RVTDRLINQLLTEMDGIEKNSGVVVIAATNRPDIIDPALLRPGRFDRLILVPAPDEKARL 721

Query: 190 TIVQ 193
            I++
Sbjct: 722 EILK 725


>gi|166154545|ref|YP_001654663.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis
           434/Bu]
 gi|166155420|ref|YP_001653675.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301335807|ref|ZP_07224051.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis
           L2tet1]
 gi|165930533|emb|CAP04028.1| DNA polymerase III subunit gamma/tau [Chlamydia trachomatis 434/Bu]
 gi|165931408|emb|CAP06982.1| DNA polymerase III subunit gamma/tau [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 466

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 51/253 (20%), Positives = 87/253 (34%), Gaps = 24/253 (9%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
              RP    E  GQ    S LK  +   +A        +F G  G GKTTLA+V A+ L 
Sbjct: 9   RRYRPNNFSEILGQDIVVSILKNSLRLNRAAHAY----IFSGIRGTGKTTLARVFAKALN 64

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHR-----LSIIVEEILYPAMEDFQL 134
               +       +      +       DV+ ID         +  I E +L+   +    
Sbjct: 65  CQNPTQDQEPCNQCAICKEISLGTSM-DVIEIDGASHRGIEDIRQINETVLFVPSKSRYK 123

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             ++ E             ++++   +      ATT +  + N +  R    +       
Sbjct: 124 IYIIDEVHMLTKEAFNSLLKTLEEPPAHVKFFLATTEIAKIPNTISSRCQKMLLKRI-SE 182

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           E +   +   AK  G   + EA   IA  ++G+ R A  L   V         +++  + 
Sbjct: 183 ETIIDKLATIAKQEGTETSREALLPIAKAAQGSLRDAESLYDYVVGLFP----ESLDPDS 238

Query: 246 ADAALLRLAIDKM 258
              AL  L+ D +
Sbjct: 239 TAKALGILSEDSL 251


>gi|125543559|gb|EAY89698.1| hypothetical protein OsI_11235 [Oryza sativa Indica Group]
          Length = 981

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 54/268 (20%), Positives = 91/268 (33%), Gaps = 40/268 (14%)

Query: 16  DADISLLRPRTL--EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQ 72
           D +  +LR + +  E+  G  +    +  FI   K R  +   ++   GPPG+GKT++ +
Sbjct: 391 DENFDVLRAQRILDEDHYGLTDVKERILEFIAVGKLRGSSQGKIICLCGPPGVGKTSIGR 450

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLED----------------RDVLFIDEIHR 116
            VAR L   F   S   ++   ++                           ++ IDEI +
Sbjct: 451 SVARALNRKFYRFSVGGLSDIAEIKGHRRTYVGAMPGKMVQCLKSVGTSNPLVLIDEIDK 510

Query: 117 LSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           L             E+L P      LD           V I+LS+   +     + ++  
Sbjct: 511 LGRGYSGDPANALLELLDPEQNANFLD-------HYLDVPIDLSKVLFVCTANVIEMIPG 563

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
           PL DR  I     +   E +       A+      T EA   +  +   T      L+  
Sbjct: 564 PLLDRMEIITIAGYITDEKMH-----IARDYLEKNTREACGIMPEQVEVTDSALLALIEN 618

Query: 229 VRDFAEVAH-AKTITREIADAALLRLAI 255
               A V +  K I +     AL  +  
Sbjct: 619 YCREAGVRNLQKQIEKVYRKIALQLVRQ 646


>gi|95931266|ref|ZP_01313985.1| ATP-dependent protease La [Desulfuromonas acetoxidans DSM 684]
 gi|95132702|gb|EAT14382.1| ATP-dependent protease La [Desulfuromonas acetoxidans DSM 684]
          Length = 814

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 60/283 (21%), Positives = 107/283 (37%), Gaps = 42/283 (14%)

Query: 25  RTLE-EFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNF 82
           R L+ +  G  +  + +  FI   K + +    +L  VGPPG+GKT++ + VA  L  NF
Sbjct: 347 RALDRDHFGLDDVKNRILEFIAVGKMKGDISGSILCLVGPPGVGKTSIGKSVAAALNRNF 406

Query: 83  RSTSGPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE---- 122
              S   +    ++                           VL +DEI ++    +    
Sbjct: 407 YRFSLGGMRDEAEIKGHRRTYIGAMPGKFIQAMKQADSANPVLMLDEIDKIGASYQGDPA 466

Query: 123 ----EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
               E+L P   +   D           V  +LS    IA   ++  +  PL DR  + I
Sbjct: 467 SALLEVLDPEQNNSFRD-------HYLDVPFDLSNVLFIATANQLDTIPAPLLDRMEV-I 518

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           RL+ Y +++   I +R      L     +  ++ +R     +I     R     A V   
Sbjct: 519 RLSGYIMDEKVEIAKRYLIPKALDNHGLSKKQVTIRKDAMEKIIDNYARE----AGVRGL 574

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVG 281
           +   ++I   A +  A D++  ++L +R       ++ G PV 
Sbjct: 575 ENRIKKIMRKAAMEFASDRV--EKLTIR--KTNVEDYLGKPVF 613


>gi|225377814|ref|ZP_03755035.1| hypothetical protein ROSEINA2194_03465 [Roseburia inulinivorans DSM
           16841]
 gi|225210325|gb|EEG92679.1| hypothetical protein ROSEINA2194_03465 [Roseburia inulinivorans DSM
           16841]
          Length = 456

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 59/250 (23%), Positives = 98/250 (39%), Gaps = 25/250 (10%)

Query: 26  TLEEFTGQVEACSNLKV---FIEAAKARAEA----LDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ EA  +L+    F+   K   E         L VGPPG GKT LA+ VA E 
Sbjct: 204 TFKDVAGQDEAKESLQEVVDFLHNPKKYREIGAKLPKGALLVGPPGTGKTLLAKAVAGEA 263

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S +G       V   A  +  L    + +   ++FIDEI  +    +       +
Sbjct: 264 GVPFFSLAGSDFVEMFVGVGASRVRDLFKEAQKQAPCIIFIDEIDAIGKSRDSRYGGGND 323

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E     + K  L    ++AAT R  +L   L    RF   I ++  +++
Sbjct: 324 EREQTLNQLLAEMDGFDTSKGLL----ILAATNRPEVLDKALLRPGRFDRRIIVDKPDLK 379

Query: 187 -DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
             L+T+      +      D  A  +A        +A  +     + A     K + +  
Sbjct: 380 GRLETLKVHSKDVLMDETVDLDALALATAGLVGSDLANMINEAAIN-AVKKGRKYVNQAD 438

Query: 246 ADAALLRLAI 255
              A   +A+
Sbjct: 439 LFEAFELVAV 448


>gi|168037225|ref|XP_001771105.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162677638|gb|EDQ64106.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 365

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 69/229 (30%), Gaps = 40/229 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP +L +     +    +             L H+L  GPPG GKT+    VAR
Sbjct: 32  PWVEKYRPTSLADVAAHKDIIDTIDRL-----TGENRLPHLLLYGPPGTGKTSTILAVAR 86

Query: 77  -----ELGVNFRSTSGPVIAKAGDLAALLTN-LEDRDVLF----------IDEIHRLSII 120
                +        +         +   + +    + + F          +DE   ++  
Sbjct: 87  KLYGAQYQNMILELNASDDRGIEVVRQQIQDFASTKSISFGPKVNVKLVILDEADAMTKD 146

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            +  L   +E +            +S +  L              +   LQ R     R 
Sbjct: 147 AQFALRRVIEKYT-----------KSTRFCL-------ICNYASKIIPALQSRC-TRFRF 187

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
              +  ++   ++   +  GL VTD     I   + G  R A  +L+  
Sbjct: 188 APLDPANVTERLRYVIQQEGLDVTDGGLAAIVRLANGDLRKALNILQSA 236


>gi|91777844|ref|YP_553052.1| putative cell division protein [Burkholderia xenovorans LB400]
 gi|91690504|gb|ABE33702.1| Putative cell division protein [Burkholderia xenovorans LB400]
          Length = 634

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 59/258 (22%), Positives = 96/258 (37%), Gaps = 29/258 (11%)

Query: 19  ISLLRPRTLEEFTGQVEACSNL---KVFIEAAKA----RAEALDHVLFVGPPGLGKTTLA 71
              LR    ++  G  EA + L   + ++   K        A   +L VG PG+GKT LA
Sbjct: 184 APALR---FDDVIGASEAKAALADIRSYLSDPKQFTSMGVRAPCGILMVGGPGVGKTRLA 240

Query: 72  QVVARELGVNFRSTSGP---------VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           Q +A E G NF S +G           I K   L  L        V+FIDE   L+   +
Sbjct: 241 QALAGECGANFISITGSYFSAKYYGVGIQKVKHLFELARKNAP-TVIFIDEADGLAKRTD 299

Query: 123 EILYP--AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPI 178
               P  A  +  ++ ++ E     S +       ++AAT     L   L+   RF   +
Sbjct: 300 TGSGPVEAESNRIINQLLAEMDGFASNEG----VIIVAATNHPDNLDEALRRPGRFDRTV 355

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRG-TPRIAGRLLRRVRDFAEVAH 237
           ++   + ED   I +  A        D    ++A  + G +P     ++ +    A  + 
Sbjct: 356 QVRLPDREDRAKIFRFYAAKLKSKSADIDYDQLARLTTGLSPATVAMVVNQAGLVARKSG 415

Query: 238 AKTITREIADAALLRLAI 255
              I  +    A+    I
Sbjct: 416 DTEIASKHFMEAIKIARI 433


>gi|33861411|ref|NP_892972.1| cell division protein FtsH4 [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33633988|emb|CAE19313.1| cell division protein FtsH4 [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 584

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 59/267 (22%), Positives = 99/267 (37%), Gaps = 33/267 (12%)

Query: 25  RTLEEFTGQVEACSNLK---VFIEAAKA----RAEALDHVLFVGPPGLGKTTLAQVVARE 77
              ++  G  EA   LK    F+   K      A+    VL +GPPG GKT LA+ +A E
Sbjct: 132 TRFDDVAGVPEAAEELKEVIKFLNEPKKFTDLGAKVPKGVLLIGPPGTGKTLLAKAIAGE 191

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
            GV F S +            A  +  L    +++   ++FIDEI  +       +    
Sbjct: 192 SGVPFLSIAASEFVELFVGVGASRVRDLFEKAKEKSPCIIFIDEIDSIGRQRGSGIGGGN 251

Query: 130 EDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           ++ +  L  ++ E         + S   +IAAT R  +L + L    RF   I +   ++
Sbjct: 252 DEREQTLNQLLTELDGF----ADNSGIIVIAATNRPDILDSALLRPGRFDRKIEVMLPDL 307

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           +  K I         +    +   +    S    R  G       D A + +   I    
Sbjct: 308 DGRKKI-------LSVHSLSKPLAKDVDLSYWATRTVG---FSGADLANLMNESAIHCAR 357

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIA 272
            D+ L+  +  +   D++ L   T I 
Sbjct: 358 EDSKLITYSHIENALDKVTLGLRTSII 384


>gi|195028018|ref|XP_001986879.1| GH20288 [Drosophila grimshawi]
 gi|193902879|gb|EDW01746.1| GH20288 [Drosophila grimshawi]
          Length = 802

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 84/257 (32%), Gaps = 28/257 (10%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVAR 76
            T  +  G       L+  ++      +            VLF GPPG GKT LA+ +A 
Sbjct: 472 TTWTDIGGLENVKKELQELVQYPVEHPDKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIAN 531

Query: 77  ELGVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127
           E   NF S  GP +         A   D+     +     VLF DE+  ++      +  
Sbjct: 532 ECQANFISVKGPELLTMWFGESEANVRDIFDKARSAAP-CVLFFDELDSIAKARGGNVGD 590

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           A      D ++ +  +            +I AT R  ++   +    R    I +   + 
Sbjct: 591 A--GGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDD 648

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA------EVAHAK 239
           +  + I++   + + LA   +      +    +      + +R    A           +
Sbjct: 649 KSREAILKANLRKSPLAKEVDLTYIAKVTQGFSGADLTEICQRACKLAIRQAIEAEIRRE 708

Query: 240 TITREIADAALLRLAID 256
               E  ++A+     D
Sbjct: 709 KDRAENQNSAMDMDEDD 725



 Score = 52.0 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 48/254 (18%), Positives = 84/254 (33%), Gaps = 31/254 (12%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARA--------EALDHVLFVGPPGLGKTTLAQVVARELG 79
           ++  G  +  + +K  +E              +    +L  GPPG GKT +A+ VA E G
Sbjct: 202 DDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVANETG 261

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMED 131
             F   +GP I          +L       E     ++FIDEI  ++   ++        
Sbjct: 262 AFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAIIFIDEIDAIAPKRDKTHGEVERR 321

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ-----DRFGIPIRLNFYEIE 186
               L+       +S     S   ++AAT R   +   L+     DR       +     
Sbjct: 322 IVSQLLTLMDGMKKS-----SHLIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRL 376

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGT-----PRIAGRLLRRVRDFAEVAHAKTI 241
           ++  I  +  KL      ++ A E                A + +R   D  ++   K  
Sbjct: 377 EVLRIHTKNMKLHEDVDLEQIAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDKID 436

Query: 242 TREIADAALLRLAI 255
              +A  A+     
Sbjct: 437 AEVLASLAVTMENF 450


>gi|145613239|ref|XP_001412726.1| hypothetical protein MGG_11141 [Magnaporthe oryzae 70-15]
 gi|145020358|gb|EDK04487.1| hypothetical protein MGG_11141 [Magnaporthe oryzae 70-15]
          Length = 808

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 53/249 (21%), Positives = 87/249 (34%), Gaps = 36/249 (14%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI   K R      +L FVGPPG+GKT++ + +AR L   +   S
Sbjct: 569 EDHYGLKDVKDRILEFIAVGKLRGTVEGKILCFVGPPGVGKTSIGKSIARALNREYYRFS 628

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRL--------SIIVE 122
              +    ++                        +  ++ IDEI ++        S  + 
Sbjct: 629 VGGLTDVAEIKGHRRTYVGALPGRVIQALKKCNTENPLILIDEIDKMGSGYKGDPSSALL 688

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V ++LS+   +        +  PL DR  + IRL+ 
Sbjct: 689 ELLDPEQNSSFLD-------HYMDVPVDLSKVLFVCTANMTDTIPRPLLDRMEV-IRLSG 740

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  ++   I QR       A  + A  E A        I   +    R+       K   
Sbjct: 741 YVSDEKMAIAQR---YLAPAAKELAGLEKADVKLNDDAIEELIKSYCRESGVRNLKKQRE 797

Query: 243 REIADAALL 251
           +    +AL 
Sbjct: 798 KVYRKSALK 806


>gi|115452575|ref|NP_001049888.1| Os03g0306400 [Oryza sativa Japonica Group]
 gi|108707734|gb|ABF95529.1| ATP-dependent protease La family protein, expressed [Oryza sativa
           Japonica Group]
 gi|113548359|dbj|BAF11802.1| Os03g0306400 [Oryza sativa Japonica Group]
          Length = 948

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 54/268 (20%), Positives = 91/268 (33%), Gaps = 40/268 (14%)

Query: 16  DADISLLRPRTL--EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQ 72
           D +  +LR + +  E+  G  +    +  FI   K R  +   ++   GPPG+GKT++ +
Sbjct: 358 DENFDVLRAQRILDEDHYGLTDVKERILEFIAVGKLRGSSQGKIICLCGPPGVGKTSIGR 417

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLED----------------RDVLFIDEIHR 116
            VAR L   F   S   ++   ++                           ++ IDEI +
Sbjct: 418 SVARALNRKFYRFSVGGLSDIAEIKGHRRTYVGAMPGKMVQCLKSVGTSNPLVLIDEIDK 477

Query: 117 LSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           L             E+L P      LD           V I+LS+   +     + ++  
Sbjct: 478 LGRGYSGDPASALLELLDPEQNANFLD-------HYLDVPIDLSKVLFVCTANVIEMIPG 530

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
           PL DR  I     +   E +       A+      T EA   +  +   T      L+  
Sbjct: 531 PLLDRMEIITIAGYITDEKMH-----IARDYLEKNTREACGIMPEQVEVTDSALLALIEN 585

Query: 229 VRDFAEVAH-AKTITREIADAALLRLAI 255
               A V +  K I +     AL  +  
Sbjct: 586 YCREAGVRNLQKQIEKVYRKIALQLVRQ 613


>gi|331003433|ref|ZP_08326932.1| hypothetical protein HMPREF0491_01794 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412479|gb|EGG91868.1| hypothetical protein HMPREF0491_01794 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 603

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 49/197 (24%), Positives = 80/197 (40%), Gaps = 22/197 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78
             ++  G+ EA  NL   ++      +  D        +L VGPPG GKT LA+ VA E 
Sbjct: 163 KFDDVAGEDEAKENLTEIVDYLHNPNKYKDIGASMPKGILLVGPPGTGKTMLAKAVAGEA 222

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG           A  +  L    +++   ++FIDEI  +    +  +    E
Sbjct: 223 NVPFFSMSGSEFVEMFVGMGASKVRDLFKQAKEKAPCIVFIDEIDAIGKKRDGHIGGNDE 282

Query: 131 -DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            +  L+ ++ E           S   ++AAT R   L   L    RF   + +   +++ 
Sbjct: 283 REQTLNQLLTEMDGFEGN----SGVIILAATNRPDALDPALTRPGRFDRRVPVELPDLKG 338

Query: 188 LKTIVQRGAKLTGLAVT 204
            + I++  AK   LA  
Sbjct: 339 REEILKVHAKKIKLADD 355


>gi|320583837|gb|EFW98050.1| mitochondrial Lon protease [Pichia angusta DL-1]
          Length = 1108

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 53/262 (20%), Positives = 91/262 (34%), Gaps = 40/262 (15%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  E    +  FI   K   +    ++ FVGPPG+GKT++ + +AR L   F   S
Sbjct: 555 EDHYGLKEVKDRILEFIAVGKLLNKINGKIICFVGPPGVGKTSIGKSIARALNRKFYRFS 614

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSI----------- 119
              +    ++                        +  ++ IDEI ++S            
Sbjct: 615 VGGLTDVAEIKGHRRTYVGAIPGRMVQALKNTETENPLVLIDEIDKISHTHHGSGGDPSA 674

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            + E+L P      +D           V INLSR   +     +  +  PL DR  +   
Sbjct: 675 ALLELLDPEQNGTFMDYY-------MDVPINLSRVLFVCTANTLSTIPAPLLDRMEVIEI 727

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
             + E E +K      A+        + +    +          +L+R     + V + K
Sbjct: 728 AGYVEDEKIK-----IAENYLAPSAKDTSGLTDVDISLREDTLQQLIRGYCRESGVRNLK 782

Query: 240 TITREIADAALLRLAIDKMGFD 261
               +I   A L++  D  G D
Sbjct: 783 KQIEKIFRKAALKVVKDVDGVD 804


>gi|313114238|ref|ZP_07799786.1| putative ATP-dependent metalloprotease [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310623432|gb|EFQ06839.1| putative ATP-dependent metalloprotease [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 612

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 46/192 (23%), Positives = 76/192 (39%), Gaps = 23/192 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE-------ALDHVLFVGPPGLGKTTLAQVVAREL 78
              +F G+ EA  NL+  ++      +           +L VGPPG GKT LA+ VA E 
Sbjct: 165 RFADFAGEDEAKENLQEIVDYLHDPGKYESIGASMPKGILLVGPPGTGKTMLAKAVAGES 224

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG           A  +  L    +++   ++FIDEI  +            +
Sbjct: 225 NVPFFSISGSEFVEMFVGMGASKVRDLFRQAKEKAPCIVFIDEIDAIGQKRNSGNLGGND 284

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E     S         ++AAT R   L   L    RF   + +   +++
Sbjct: 285 EREQTLNQLLTEMDGFESNTG----VIILAATNRPDSLDPALTRPGRFDRRVPVELPDLK 340

Query: 187 DLKTIVQRGAKL 198
             + I++  AK 
Sbjct: 341 GREEILKVHAKK 352


>gi|302836043|ref|XP_002949582.1| hypothetical protein VOLCADRAFT_74263 [Volvox carteri f.
           nagariensis]
 gi|300264941|gb|EFJ49134.1| hypothetical protein VOLCADRAFT_74263 [Volvox carteri f.
           nagariensis]
          Length = 435

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 52/263 (19%), Positives = 91/263 (34%), Gaps = 25/263 (9%)

Query: 26  TLEEFTGQVEACSNLK-------VFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
             ++  G   A   LK        F +    + +    +L  GPPG GK+ LA+ VA E 
Sbjct: 126 RWDDVAGLEGAKEALKEAVILPVKFPQFFTGKRKPWSGILLYGPPGTGKSYLAKAVATEA 185

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAME 130
              F S S   +           ++ L     +    ++FIDE+  L     +    A  
Sbjct: 186 DSTFFSISSQDLVSKWLGESEKLVSQLFALARENAPSIIFIDEVDSLCSARGDNESEAAR 245

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
             +  LM+      + V  N SR  ++ AT     L   ++ RF   I +   +      
Sbjct: 246 RIKTQLMI----EMQGVGSNNSRVLVLGATNLPYNLDQAIRRRFDKRIYIPLPDESARAH 301

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSR------GTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           + +     T   +TD    E+  R+        +  +   L++ +R   E  H K +   
Sbjct: 302 MFKIHLGDTPNDLTDADYRELGRRTEGFSGSDVSVVVKDVLMQPIRLLREATHFKRVRTP 361

Query: 245 IADAALLRLAIDKMGFDQLDLRY 267
                    +    G  +L L +
Sbjct: 362 DGGEGWEPCSPGDRGAQELSLNH 384


>gi|170692615|ref|ZP_02883777.1| AAA ATPase central domain protein [Burkholderia graminis C4D1M]
 gi|170142271|gb|EDT10437.1| AAA ATPase central domain protein [Burkholderia graminis C4D1M]
          Length = 638

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 57/251 (22%), Positives = 96/251 (38%), Gaps = 26/251 (10%)

Query: 26  TLEEFTGQVEACSNL---KVFIEAAKA----RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
             ++  G  EA + L   + ++ + K        A   +L VG PG+GKT LAQ +A E 
Sbjct: 188 RFDDVIGANEAKAALADIRGYLSSPKQFTSMGVRAPCGILMVGGPGVGKTRLAQALAGEC 247

Query: 79  GVNFRSTSGP---------VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP-- 127
           G NF S +G           I K   L  +        V+FIDE   L+   +    P  
Sbjct: 248 GANFISITGSYFSAKYYGVGIQKVKHLFEMARKNAP-TVIFIDEADGLAKRTDTGGGPVE 306

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           A  +  ++ ++ E     S +       ++AAT     L   L+   RF   +++   + 
Sbjct: 307 AESNRIINQLLAEMDGFASNEG----VIIVAATNHPDNLDEALRRPGRFDRTVQVRLPDR 362

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRG-TPRIAGRLLRRVRDFAEVAHAKTITRE 244
           ED   I +  A+       D    ++A  + G +P     ++ +    A  A    I  +
Sbjct: 363 EDRAKIFRFYAEKLKSKAADIDYDQLARLTTGLSPATVAMVVNQAGLVARKAGETEIAAK 422

Query: 245 IADAALLRLAI 255
               A+    I
Sbjct: 423 HFIEAIKIARI 433


>gi|158294507|ref|XP_315644.3| AGAP005630-PA [Anopheles gambiae str. PEST]
 gi|157015594|gb|EAA44058.3| AGAP005630-PA [Anopheles gambiae str. PEST]
          Length = 804

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 85/257 (33%), Gaps = 23/257 (8%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVAR 76
            T  +  G       L+  ++      +            VLF GPPG GKT LA+ +A 
Sbjct: 471 TTWTDIGGLENVKRELQELVQYPVEHPDKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIAN 530

Query: 77  ELGVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127
           E   NF S  GP +         A   D+     +     VLF DE+  ++      +  
Sbjct: 531 ECQANFISVKGPELLTMWFGESEANVRDIFDKARSASP-CVLFFDELDSIAKSRGGNVGD 589

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           A      D ++ +  +            +I AT R  ++   +    R    I +   + 
Sbjct: 590 A--GGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE 647

Query: 186 EDLKTIVQRGAKLTGLAVT-DEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +  + I++   + + +A   D        +      +     R  +     A    I RE
Sbjct: 648 KSREAILRANLRKSPVAEDVDLNYVAKVTQGFSGADLTEICQRACKLAIRQAIEAEIRRE 707

Query: 245 IADAALLRLAIDKMGFD 261
              AA    A+D    D
Sbjct: 708 RDRAASQNAAMDMDEED 724



 Score = 53.9 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 53/263 (20%), Positives = 89/263 (33%), Gaps = 38/263 (14%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARA--------EALDHVLFVGPPGLGKTTLAQVVARELG 79
           ++  G  +  + +K  +E              +    +L  GPPG GKT +A+ VA E G
Sbjct: 201 DDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVANETG 260

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMED 131
             F   +GP I          +L       E     ++FIDEI  ++   E+        
Sbjct: 261 AFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAIIFIDEIDAIAPKREKTHGEVERR 320

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
               L+       +S     S   ++AAT R   +   L+   RF   I +   +     
Sbjct: 321 IVSQLLTLMDGMKKS-----SHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRL 375

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            +++   K   LA  D    +IA  S G        L               +       
Sbjct: 376 EVLRIHTKNMKLA-DDVDLEQIAAESHGHVGADLASL--------------CSEAALQQI 420

Query: 250 LLRLAIDKMGFDQLDLRYLTMIA 272
             ++ +  +  DQ+D   L  +A
Sbjct: 421 REKMDLIDLEDDQIDAEVLNSLA 443


>gi|126696352|ref|YP_001091238.1| cell division protein FtsH4 [Prochlorococcus marinus str. MIT 9301]
 gi|126543395|gb|ABO17637.1| cell division protein FtsH4 [Prochlorococcus marinus str. MIT 9301]
          Length = 584

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 56/267 (20%), Positives = 103/267 (38%), Gaps = 33/267 (12%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVARE 77
              ++  G  EA   LK  I   K         A+    VL +GPPG GKT LA+ +A E
Sbjct: 131 TRFDDVAGVPEAAEELKEVITFLKEPKKFENLGAKFPKGVLLIGPPGTGKTLLAKAIAGE 190

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
            GV F S S            A  +  L +  +++   ++FIDEI  +       +    
Sbjct: 191 SGVPFLSISASEFVELFVGVGASRVRDLFSKAKEKSPCIIFIDEIDSIGRQRGSGIGGGN 250

Query: 130 EDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           ++ +  L  ++ E         + S   ++AAT R  +L   L    RF   I +   ++
Sbjct: 251 DEREQTLNQLLTELDGF----ADNSGIIVLAATNRPDILDAALLRPGRFDRKIEVMLPDL 306

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           +  K I+     +  L+    +  ++A  +  T   +G       D A + +   I    
Sbjct: 307 DGRKKILS----VHSLSKPLSSEVDLAYWASRTVGFSG------ADLANLMNESAIHCAR 356

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIA 272
            ++ L+     +   D++ +   + + 
Sbjct: 357 DESKLISDLHIENALDKITIGLRSSLI 383


>gi|322801676|gb|EFZ22299.1| hypothetical protein SINV_06607 [Solenopsis invicta]
          Length = 793

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 52/266 (19%), Positives = 86/266 (32%), Gaps = 44/266 (16%)

Query: 31  TGQVEACSNLKVFIEAAKARAEALDH--------------VLFVGPPGLGKTTLAQVVAR 76
            G  +     K   +  +     L H              +L  GPPG GKT +A+ VA 
Sbjct: 191 VGYDDIGGVRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 250

Query: 77  ELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPA 128
           E G  F   +GP I          +L       E     ++FIDE+  ++   E+     
Sbjct: 251 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAIIFIDELDAIAPKREK----- 305

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
                   +V +  +        S   ++AAT R   +   L+   RF   I +   +  
Sbjct: 306 THGEVERRIVSQLLTLMDGMKQSSHVIVMAATNRPNSIDGALRRFGRFDREIDIGIPDAT 365

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
               I++   K   LA  D    EIA  + G        L               +    
Sbjct: 366 GRLEILRIHTKNMKLA-DDVDLEEIAAETHGHVGADLASL--------------CSEAAL 410

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIA 272
                ++ +  +  D +D   L+ +A
Sbjct: 411 QQIREKMDLIDLEDDHIDAEVLSSLA 436



 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 48/255 (18%), Positives = 90/255 (35%), Gaps = 20/255 (7%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVARE 77
           T ++  G       L+  ++      +            VLF GPPG GKT LA+ +A E
Sbjct: 465 TWDDIGGLQNVKMELQELVQYPVEHPDKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANE 524

Query: 78  LGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAM 129
              NF S  GP +     G+  A + ++ D+       VLF DE+  ++      +  A 
Sbjct: 525 CQANFISVKGPELLTMWFGESEANVRDVFDKARSAAPCVLFFDELDSIAKSRGGTVGDA- 583

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                D ++ +  +            +I AT R  ++   +    R    I +   + + 
Sbjct: 584 -GGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKS 642

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            + I +   + + +A   + +    +    +      + +R    A     +T  R   +
Sbjct: 643 REAIFRANLRKSPVAKDVDLSYIAKVTHGFSGADLTEICQRACKLAIRQCIETEIRREKE 702

Query: 248 AALLRLAIDKMGFDQ 262
            A    A   M  D 
Sbjct: 703 RANNPSASMDMDEDD 717


>gi|160875802|ref|YP_001555118.1| DNA polymerase III subunits gamma and tau [Shewanella baltica
           OS195]
 gi|160861324|gb|ABX49858.1| DNA polymerase III, subunits gamma and tau [Shewanella baltica
           OS195]
 gi|315267992|gb|ADT94845.1| DNA polymerase III, subunits gamma and tau [Shewanella baltica
           OS678]
          Length = 1137

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 49/241 (20%), Positives = 75/241 (31%), Gaps = 55/241 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQV-------- 73
           RP T ++  GQ      L   +       + L H  LF G  G+GKT+LA++        
Sbjct: 38  RPATFDQMVGQSHVLHALTNALS-----QQRLHHAYLFTGTRGVGKTSLARLFAKGLNCE 92

Query: 74  ----------------VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRD------VLFI 111
                           +A+   V+          K  D   LL N++ R       V  I
Sbjct: 93  QGVTATPCGVCGSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPTRGRFKVYLI 152

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 153 DEVHMLSRSSFNALLKTLEE------------------PPEHVKFLLATTDPQKLPVTVL 194

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L      ++ T +             EA   +A  + G+ R A  L  +   
Sbjct: 195 SRC-LQFNLKSLTQGEIGTQLNHILTQEQFPFDAEAIKLLAKAANGSMRDALSLTDQAIA 253

Query: 232 F 232
           F
Sbjct: 254 F 254


>gi|50303727|ref|XP_451808.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49640940|emb|CAH02201.1| KLLA0B06094p [Kluyveromyces lactis]
          Length = 360

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 54/263 (20%), Positives = 98/263 (37%), Gaps = 39/263 (14%)

Query: 8   LSRNVSQEDADISLLRPR----TLEEFTGQVEACSNL-----------KVFIEAAKARAE 52
           +S N  +     S++ P+    + E+  G  +    L           ++F E+A    E
Sbjct: 67  VSLNAYERSVLASVITPQDIDVSFEDIGGLEDVIEELTESVIYPLTSPEIFSESALL--E 124

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--------AKAGDLAALLTNLE 104
           A   VL  GPPG GKT +A+ +A E G NF S     I         K  D    L N  
Sbjct: 125 APKGVLLYGPPGCGKTMIAKALAHESGANFISIRMSSIMDKWYGESNKIVDAMFSLANKI 184

Query: 105 DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS---RFTLIAATT 161
              ++FIDEI             A  D ++  M+       ++   L+   +  ++ AT 
Sbjct: 185 QPCIIFIDEIDSFLRQR------ASSDHEVTSMLKA--EFMTLWDGLTSNGKVMVLGATN 236

Query: 162 RVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRI 221
           R+  + +    R      +     +    I++          +D    ++    + T ++
Sbjct: 237 RINDIDSAFLRRLPKRFPVALPNAQQRHKILK---VFLKDTKSDPRDFDLDYIVQCTSQM 293

Query: 222 AGRLLRRVRDFAEVAHAKTITRE 244
           +G  L+ +   A +  A+   +E
Sbjct: 294 SGSDLKELCRDAALTAAREYIKE 316


>gi|50365493|ref|YP_053918.1| DNA polymerase III gamma and tau subunits [Mesoplasma florum L1]
 gi|50364049|gb|AAT76034.1| DNA polymerase III gamma and tau subunits [Mesoplasma florum L1]
          Length = 631

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/254 (15%), Positives = 82/254 (32%), Gaps = 41/254 (16%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           + Q  A     RP    +  G       LK  ++  K         LF G  G GKT++A
Sbjct: 1   MEQNKALYRKYRPSNFGDIAGHQNVVEILKNELKNNKIS----HSFLFAGQRGTGKTSIA 56

Query: 72  QVVARELGV------------------------NFRSTSGPVIAKAGDLAALLTN----- 102
           +++A+ +                          +             ++  +  N     
Sbjct: 57  RILAKSVNCLNIKDGLACEVCESCIASNEQRNPDIIEMDAASNNGVDEIREIKNNINSLP 116

Query: 103 -LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL--DLMVGEGPSARSVKINLSRFTLIAA 159
            +    +  IDE+H L+      L   +E+  +    ++     A+     LSR  +   
Sbjct: 117 FIGKYKIYIIDEVHMLTKAAFNALLKTLEEPPVHAIFILATTEYAKIPATILSRCQIFNF 176

Query: 160 TTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTP 219
                +    L +R         Y+I+  K +++  A ++  ++ D +     + +  + 
Sbjct: 177 KKIDRIS---LMNRLSFICENEGYKID--KAVLEEIAIISEGSLRDASNVIEQLMTVTSD 231

Query: 220 RIAGRLLRRVRDFA 233
            I    L+ V   A
Sbjct: 232 HITVEDLKSVFYVA 245


>gi|332023997|gb|EGI64215.1| Lon protease-like protein, mitochondrial [Acromyrmex echinatior]
          Length = 987

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 68/187 (36%), Gaps = 32/187 (17%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI  ++ +      +L F GPPG+GKT++A+ +AR L   +   S
Sbjct: 505 EDHYGMDDIKKRILEFIAVSQLKGSTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFS 564

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ ++    +        
Sbjct: 565 VGGMTDVAEIKGHRRTYVGAMPGKVIQCLKKTKTENPLILIDEVDKIGKGHQGDPASALL 624

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V ++LS+   I     +  +  PL+DR  +     +
Sbjct: 625 EMLDPEQNANFLD-------HYLDVPVDLSKVLFICTANVIDTIPEPLRDRMEMIDMSGY 677

Query: 183 YEIEDLK 189
              E L 
Sbjct: 678 VAEEKLA 684


>gi|307701252|ref|ZP_07638274.1| ATP-dependent metallopeptidase HflB [Mobiluncus mulieris FB024-16]
 gi|307613646|gb|EFN92893.1| ATP-dependent metallopeptidase HflB [Mobiluncus mulieris FB024-16]
          Length = 765

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 59/249 (23%), Positives = 89/249 (35%), Gaps = 29/249 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  EA   L+   E         K  A+    VL  GPPG GKT LA+ VA E 
Sbjct: 185 TFADVAGVNEAVEELQEIKEFLAEPDKFHKLGAKIPKGVLLYGPPGTGKTLLAKAVAGEA 244

Query: 79  GVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           GV F S SG            ++  DL     +     ++F+DEI  +       +    
Sbjct: 245 GVPFFSMSGSEFVEMFVGMGASRVRDLFEQARSAAP-AIIFVDEIDAVGRHRGTGMGGGH 303

Query: 130 EDFQLD----LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183
           ++ +      L+  +G   R+  I       IAAT R  +L   L    RF   + +   
Sbjct: 304 DEREQTLNQLLVEMDGFDERTNVIL------IAATNRPDVLDPALLRPGRFDRQVAVEAP 357

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           +I+  + I+   AK   L+   +           T      +L      A     + I  
Sbjct: 358 DIKGREAILTVHAKNKPLSKDTDLKALAKRTPGFTGADLANVLNEAALLAARHTLEEINA 417

Query: 244 EIADAALLR 252
              D A+ R
Sbjct: 418 SDLDEAVDR 426


>gi|300814178|ref|ZP_07094461.1| DNA polymerase III, subunit gamma and tau [Peptoniphilus sp. oral
           taxon 836 str. F0141]
 gi|300511835|gb|EFK39052.1| DNA polymerase III, subunit gamma and tau [Peptoniphilus sp. oral
           taxon 836 str. F0141]
          Length = 577

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 84/232 (36%), Gaps = 25/232 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP    +  GQ     +LK  I       E     LF G  G GKT+ A++ AR
Sbjct: 4   ALYRKYRPLDFNQMIGQDALVMSLKNQI----KNNEVSHAYLFSGTRGTGKTSAAKIFAR 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR--DVLFID-----EIHRLSIIVEEILYPAM 129
            +         P         + L+NL +   DV+ +D      +  +  + ++++YP  
Sbjct: 60  AVNCEHPIDGNP----CNKCKSCLSNLNNTSVDVVEMDAASNNGVDDIRDLKDKVIYPPT 115

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                  ++ E             + ++   S    I ATT    +   +  R       
Sbjct: 116 FLKYKVYIIDEVHMLSKGAFNALLKILEEPPSHLIFILATTEKEKIPATILSRTQKFEFS 175

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
               +E++   ++  +++ G  + DE    IA  S G  R A  +L ++  F
Sbjct: 176 RV-SLENIIKRLKYISQMEGKTLDDEVYLLIAKTSDGAMRDALSVLDQLLSF 226


>gi|18978254|ref|NP_579611.1| cell division protein CDC48 [Pyrococcus furiosus DSM 3638]
 gi|18894073|gb|AAL82006.1| cell division control protein 48, aaa family [Pyrococcus furiosus
           DSM 3638]
          Length = 796

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/186 (24%), Positives = 70/186 (37%), Gaps = 23/186 (12%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
           T E+  G  +    ++  IE      E            VL  GPPG GKT LA+ VA E
Sbjct: 181 TYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANE 240

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM 129
               F + +GP I           L  +    E+    ++FIDEI  ++   EE+     
Sbjct: 241 ANAYFIAINGPEIMSKYYGESEERLREVFREAEENAPAIIFIDEIDAIAPKREEVTGEVE 300

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
           +     L+            +  +  +I AT R   +   L+   RF   I +   + + 
Sbjct: 301 KRVVAQLLT-----LMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEIGIPDKQG 355

Query: 188 LKTIVQ 193
            K I+Q
Sbjct: 356 RKEILQ 361



 Score = 52.0 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 45/207 (21%), Positives = 76/207 (36%), Gaps = 24/207 (11%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVARELG 79
           ++  G  E    L+  +E      EA           +L  GPPG GKT LA+ VA E  
Sbjct: 517 DDIGGLEEVKQQLREAVEWPLKYPEAFRAFGITPPKGILLYGPPGTGKTLLAKAVATESQ 576

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAMED 131
            NF +  GP +           +  +          ++FIDEI  ++      +     +
Sbjct: 577 ANFIAIRGPEVLSKWVGESEKRIREIFRKARQAAPAIIFIDEIDAIAPTRGTDV-----N 631

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
              D ++ +  +     +  S   +I AT R  ++   L    RF   I +   + +   
Sbjct: 632 RVTDRIINQLLTEMDGIVENSGVVVIGATNRPDIIDPALLRPGRFDRLILVPAPDEKARL 691

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSR 216
            I +   +   LA  D    E+A R+ 
Sbjct: 692 EIFKVHTRGMPLA-DDVDLKELARRTE 717


>gi|224053835|ref|XP_002298003.1| predicted protein [Populus trichocarpa]
 gi|222845261|gb|EEE82808.1| predicted protein [Populus trichocarpa]
          Length = 344

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 54/291 (18%), Positives = 94/291 (32%), Gaps = 42/291 (14%)

Query: 7   LLSRNVSQEDADISLLRPR---------TLEEFTGQVEACSNLKVFIEAAKARAEALDH- 56
           +LS  V  ++     +RP          T  +     E   +L+  +     R +     
Sbjct: 1   MLSLEVPPDNEFEKRIRPEVIPPNEINVTFSDIGALEETKESLQELVMLPLRRPDLFKGG 60

Query: 57  -------VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNL 103
                  +L  GPPG GKT LA+ +A+E G +F + S   I          ++ AL T  
Sbjct: 61  LLKPCRGILLFGPPGTGKTMLAKAIAKEAGASFINVSMSTITSKWFGEDEKNVRALFTLA 120

Query: 104 ED--RDVLFIDEIHR-LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAAT 160
                 ++F+DE+   L        + AM   + + M         +     R  ++AAT
Sbjct: 121 AKVSPTIIFVDEVDSMLGQRSRAGEHEAMRKIKNEFMT---HWDGLLTNQGERILVLAAT 177

Query: 161 TRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTD-------------EA 207
            R   L   +  RF   I +     E  + I++       +   D               
Sbjct: 178 NRPFDLDEAIIRRFERRIMVGLPSAEHRERILKTLLGKEKMEGLDFKELATMTEGYSGSD 237

Query: 208 ACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKM 258
              +   +   P        R++D A V   +    +    A     + K 
Sbjct: 238 LKNLCTTAAYRPVRELIQQERLKDLASVKKQRAEAAQKLGEATDTKEVKKE 288


>gi|195940902|ref|ZP_03086284.1| DNA polymerase III subunits gamma and tau [Escherichia coli O157:H7
           str. EC4024]
          Length = 111

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 40/105 (38%), Gaps = 6/105 (5%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127
            +          D    +      D++ ID   R  +     L  
Sbjct: 65  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLD 109


>gi|150866932|ref|XP_001386694.2| hypothetical protein PICST_64463 [Scheffersomyces stipitis CBS
           6054]
 gi|149388188|gb|ABN68665.2| predicted protein [Scheffersomyces stipitis CBS 6054]
          Length = 935

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 94/245 (38%), Gaps = 36/245 (14%)

Query: 32  GQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           G  +    +  FI   +   +    +L   GPPG GKT++A+ +A  L   +   +   I
Sbjct: 377 GLKDVKDRILEFISMGRVSGKVDGKILCLTGPPGTGKTSIAKSIAESLNRKYVRIAMGGI 436

Query: 91  AKAGDLA------------ALLTNLED----RDVLFIDEIHRL--------SIIVEEILY 126
               ++              +++ L+       ++ IDEI +L        S    EIL 
Sbjct: 437 QDVHEVKGHRRTYVGSIPGRIISALKQAKTSNPLMLIDEIDKLDLSRSGGASSAFLEILD 496

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           P   +  +D  +        VK++LS+   +     +G ++ PL+DR  I I +N Y   
Sbjct: 497 PEQNNAFVDNYI-------DVKVDLSKVLFVCTANYLGNISPPLRDRMEI-IEVNGYTNN 548

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +   I +R           +A  E       T  I+  + +  R+       K ITR  +
Sbjct: 549 EKIEIAKRH---LIPDAAKKAGLEGGHVVIETKTISRLIEKYCRESGLRNIKKLITRIFS 605

Query: 247 DAALL 251
            A+L 
Sbjct: 606 KASLK 610


>gi|50955660|ref|YP_062948.1| cell division protein [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50952142|gb|AAT89843.1| cell division protein [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 667

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 70/253 (27%), Positives = 104/253 (41%), Gaps = 36/253 (14%)

Query: 24  PR-TLEEFTGQVEACSNLK----VFIEAAKARA---EALDHVLFVGPPGLGKTTLAQVVA 75
           P+ T E+  G  EA   L+       E AK +A        VL  GPPG GKT LA+ VA
Sbjct: 159 PKVTFEDVAGSDEAIEELEEIKDFLKEPAKFQAVGARIPKGVLLYGPPGTGKTLLARAVA 218

Query: 76  RELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYP 127
            E GV F S SG       V   A  +  L    ++    ++FIDEI  +       L  
Sbjct: 219 GEAGVPFYSISGSDFVEMFVGVGASRVRDLFQQAKENSPAIIFIDEIDAVGRHRGAGLGG 278

Query: 128 AMEDFQLDL------MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIR 179
             ++ +  L      M G  P A  + I        AAT R  +L   L    RF   I 
Sbjct: 279 GHDEREQTLNQLLVEMDGFDPKANVILI--------AATNRPDILDPALLRPGRFDRQIG 330

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           ++  ++   K I++    + G      A+ ++ + +R TP   G  L  V + A +  A+
Sbjct: 331 VDAPDLLGRKKILE----VHGRGKPIAASVDLEVLARKTPGFTGADLANVLNEAALLTAR 386

Query: 240 TITREIADAALLR 252
           +  + I + AL  
Sbjct: 387 SNAQLIDNRALDE 399


>gi|33862949|ref|NP_894509.1| FtsH ATP-dependent protease-like protein [Prochlorococcus marinus
           str. MIT 9313]
 gi|33634866|emb|CAE20852.1| FtsH ATP-dependent protease homolog [Prochlorococcus marinus str.
           MIT 9313]
          Length = 638

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 63/274 (22%), Positives = 101/274 (36%), Gaps = 23/274 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
             ++  G  EA  +L+  +   K         A+    VL VGPPG GKT LA+ +A E 
Sbjct: 179 KFDDVAGVTEAKQDLEEVVTFLKKPERFTSVGAQIPRGVLLVGPPGTGKTLLAKAIAGEA 238

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG           A  +  L    ++    ++FIDEI  +       +    +
Sbjct: 239 GVPFFSLSGSEFVEMFVGVGASRVRDLFKRAKENTPCLIFIDEIDAVGRQRGAGIGGGND 298

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E           S   +IAAT R  +L + L    RF   + ++  +I+
Sbjct: 299 EREQTLNQLLTEMDGFEGN----SGIIIIAATNRPDVLDSALMRPGRFDRQVSVDAPDIK 354

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
               I++  A+   L                T      LL            K I+ +  
Sbjct: 355 GRLAILEVHARDKKLEEDLSLKNVARRTPGFTGADLANLLNEAAILTARRRKKAISLDEI 414

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV 280
           D A+ R+     G    D R   +IA +  G  +
Sbjct: 415 DDAVDRIIAGMEGHPLTDGRSKRLIAYHEVGHAL 448


>gi|325274405|ref|ZP_08140492.1| DNA polymerase III subunits gamma and tau [Pseudomonas sp. TJI-51]
 gi|324100440|gb|EGB98199.1| DNA polymerase III subunits gamma and tau [Pseudomonas sp. TJI-51]
          Length = 310

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 61/321 (19%), Positives = 90/321 (28%), Gaps = 65/321 (20%)

Query: 30  FTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVNFRSTS-- 86
             GQ      LK  I A     + L H  LF G  G+GKTT+A+++A+ L      TS  
Sbjct: 1   MVGQTHV---LKALINA--LDNQRLHHAYLFTGTRGVGKTTIARIIAKCLNCETGITSTP 55

Query: 87  ----------------------GPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLS 118
                                      K  D   LL N++         V  IDE+H LS
Sbjct: 56  CGTCSVCREIDEGRFVDLIEIDAASRTKVEDTRELLDNVQYAPSRGRFKVYLIDEVHMLS 115

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
                 L   +E+                         I ATT    L   +  R  +  
Sbjct: 116 THSFNALLKTLEE------------------PPPYVKFILATTDPQKLPATILSRC-LQF 156

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
            L     E +   +        +    +A   +   + G+ R A  L     D A     
Sbjct: 157 SLKNMSPERVVEHLSHVLAAENVPFEADALWLLGRAADGSMRDAMSL----TDQAIAFGE 212

Query: 239 KTITREIADAALLRLAIDK-MG-----FDQLDLRYLTMIARNFGGGPVGIETISAGLSEP 292
             +      A L  L   +  G      +      L  +      GP     ++  L+  
Sbjct: 213 GKVLAADVRAMLGSLDHGQVYGVLQALLEGDARALLEAVRNLAEQGPDWAGVLAEMLNVL 272

Query: 293 RDAIEDLIEPYMIQQGFIQRT 313
                    P  +  G   R 
Sbjct: 273 HRVAIAQALPEAVDNGQGDRD 293


>gi|163750244|ref|ZP_02157486.1| DNA polymerase III, gamma and tau subunits [Shewanella benthica
           KT99]
 gi|161330100|gb|EDQ01084.1| DNA polymerase III, gamma and tau subunits [Shewanella benthica
           KT99]
          Length = 882

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/179 (20%), Positives = 56/179 (31%), Gaps = 36/179 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN- 81
           RP T E+  GQ        + +  A  +       LF G  G+GKT+LA++ A+ L    
Sbjct: 11  RPATFEQMVGQSHVL----LALTNALTQQRLHHAYLFSGTRGVGKTSLARLFAKGLNCEQ 66

Query: 82  -----------------------FRSTSGPVIAKAGDLAALLTNLEDRD------VLFID 112
                                            K  D   LL N++ R       V  ID
Sbjct: 67  GITASPCGQCSSCVEIAEGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLID 126

Query: 113 EIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           E+H LS      L   +E+    +  ++      R     LSR       +      + 
Sbjct: 127 EVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQRLPVTVLSRCLQFNLKSLTQDEISA 185


>gi|123425085|ref|XP_001306726.1| ATPase, AAA family protein [Trichomonas vaginalis G3]
 gi|121888316|gb|EAX93796.1| ATPase, AAA family protein [Trichomonas vaginalis G3]
          Length = 440

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 49/255 (19%), Positives = 86/255 (33%), Gaps = 42/255 (16%)

Query: 13  SQEDADISLLR---PRTLE----------------EFTGQVEACSNLKVFI-------EA 46
           ++E+     LR   PR LE                +  G   A   ++  I       + 
Sbjct: 136 NKEEEIDERLRGVDPRLLEIIENEILIGNPGTKWEDIAGLDHAKQAVQEAIILPMKYPDL 195

Query: 47  AKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALL 100
                E    VLF GPPG GKT +A+ +A E    F + S   +             AL 
Sbjct: 196 FTELREPPRGVLFFGPPGTGKTLIAKALATEAQCTFFNISASSLTSKWVGEGEKLTRALF 255

Query: 101 TNLEDR--DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIA 158
                +   ++FIDEI  +     +  + A    + + ++        V     R  ++ 
Sbjct: 256 ALARIKAPSIVFIDEIDSILTKRGDNDFEASRRVKTEFLL----QFEGVGSGKERVLILG 311

Query: 159 ATTRVGLLTNPLQDRFGIPIRLNFYEI----EDLKTIVQRGAKLTGLAVTDEAACEIAMR 214
           AT R   + +  + RF   I +   +I    + ++ +V+R +        D+ A      
Sbjct: 312 ATNRPQDIDDAARRRFTKRIYIPLPDIATRGQLVRILVKRASNTLNEEQIDKIAEMTDGY 371

Query: 215 SRGTPRIAGRLLRRV 229
           S        +    V
Sbjct: 372 SCADMTTLLKEAAMV 386


>gi|21673136|ref|NP_661201.1| cell division protein FtsH [Chlorobium tepidum TLS]
 gi|21646212|gb|AAM71543.1| cell division protein FtsH [Chlorobium tepidum TLS]
          Length = 659

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 59/248 (23%), Positives = 92/248 (37%), Gaps = 27/248 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAA-------KARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  EA   LK  +E         K   +    VL +GPPG GKT LA+ +A E 
Sbjct: 207 TFNDVAGVDEAIEELKETVEFLMNPEKFQKIGGKIPKGVLLLGPPGTGKTLLAKAIAGEA 266

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  L    +     ++FIDEI  +       L    +
Sbjct: 267 KVPFFSISGADFVEMFVGVGAARVRDLFETAKKNSPCIVFIDEIDAVGRSRGAGLGGGHD 326

Query: 131 DFQLD----LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
           + +      L+  +G +AR   I       IAAT R  +L + L    RF   I ++  +
Sbjct: 327 EREQTLNQLLVEMDGFTARDNVIL------IAATNRPDVLDSALLRPGRFDRQITIDKPD 380

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           I   K I++   +   L  + +           +      L+      A   +   IT +
Sbjct: 381 IRGRKAILEIHTRKKPLDSSVDLETIAKSTPGFSGADLANLVNEAALLASRYNQTEITAD 440

Query: 245 IADAALLR 252
             + A  +
Sbjct: 441 NFEEARDK 448


>gi|70950164|ref|XP_744429.1| cell division cycle ATPase [Plasmodium chabaudi chabaudi]
 gi|56524378|emb|CAH74321.1| cell division cycle ATPase, putative [Plasmodium chabaudi chabaudi]
          Length = 633

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 46/210 (21%), Positives = 74/210 (35%), Gaps = 34/210 (16%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAE--------ALD 55
            E  L+R   +E+ D         E+  G  +  + ++  IE      E        A  
Sbjct: 233 SETFLNREDYEENTDD-----INYEDLGGMKKQLNKIRELIELPLKYPEIFMSIGISAPK 287

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD-- 107
            VL  G PG GKT++A+ +A E        +GP I           L  +     ++   
Sbjct: 288 GVLMHGIPGTGKTSIAKAIANESNAYCYIINGPEIMSKHIGESEQKLRKIFKKASEKTPC 347

Query: 108 VLFIDEIH---RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164
           ++FIDEI             L   +    L LM G   +   +        ++AAT R  
Sbjct: 348 IIFIDEIDSIANKRNKSSNELEKRVVSQLLTLMDGLKKNNNVL--------VLAATNRPN 399

Query: 165 LLTNPLQD--RFGIPIRLNFYEIEDLKTIV 192
            L   L+   RF   I +   + +    I+
Sbjct: 400 SLDPALRRFGRFDREIEIPVPDEQGRYEIL 429


>gi|283956558|ref|ZP_06374037.1| DNA polymerase III [Campylobacter jejuni subsp. jejuni 1336]
 gi|283791807|gb|EFC30597.1| DNA polymerase III [Campylobacter jejuni subsp. jejuni 1336]
          Length = 510

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 52/235 (22%), Positives = 86/235 (36%), Gaps = 27/235 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     RP+T +E  GQ     +LK  +         L H  LF G  G GKT+ A++ +
Sbjct: 4   ALAIKYRPKTFDELIGQKTVSVSLKYAL-----NHNRLAHAYLFSGLRGSGKTSSARIFS 58

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHR-----LSIIVEEILY-P 127
           R L        GP     G     L  LE +  D++ +D         +  ++E+  Y P
Sbjct: 59  RALVCE----QGPSDTPCGTCKHCLAALEGKHIDIIEMDAASNRGLEDIQTLIEQTKYTP 114

Query: 128 AMEDFQLDLMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +M  F++ ++               ++++   S    I ATT    L   +  R      
Sbjct: 115 SMARFKIFIIDEVHMLTPQAANALLKTLEEPPSYVKFILATTDPLKLPATVLSRTQHFRF 174

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
               + E L   ++       +   +EA   IA    G+ R    LL +   F +
Sbjct: 175 KQIPQSEIL-NHLKEILLKENVKFEEEALKFIARSGNGSLRDTLTLLDQAIIFCQ 228


>gi|225018615|ref|ZP_03707807.1| hypothetical protein CLOSTMETH_02565 [Clostridium methylpentosum
           DSM 5476]
 gi|224948609|gb|EEG29818.1| hypothetical protein CLOSTMETH_02565 [Clostridium methylpentosum
           DSM 5476]
          Length = 536

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 82/228 (35%), Gaps = 27/228 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP++ E+   Q    + L   I   K         LF G  G GKTT ++++A+ +    
Sbjct: 10  RPKSFEDVLSQPHITTTL---INEIKT-GHIAHAYLFTGSRGTGKTTCSKILAKAVNCLH 65

Query: 83  RSTSGPVIAKAGDLAALLTNLEDR---DVLFID-----EIHRLSIIVEEILYPAMEDFQL 134
                PV  +          +ED    DV+ ID      +  +  + +E  +  +     
Sbjct: 66  -----PVDGEPCHECECCRGIEDGSILDVVEIDAASNNGVDNIRELRDEANFTPVSCKYR 120

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             ++ E             + ++        I ATT V  +   +  R          + 
Sbjct: 121 VYIIDEAHMLSTGAFNALLKIMEEPPPHVIFILATTEVHKVPATILSRCQ-RFDFRRIKA 179

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
           ED+   + +  +    ++T EAA  IA  + G  R A  LL +   F+
Sbjct: 180 EDIVAQLMKITESEEFSLTQEAAELIARLADGGMRDALSLLDQCVAFS 227


>gi|168001423|ref|XP_001753414.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162695293|gb|EDQ81637.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 655

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 55/279 (19%), Positives = 96/279 (34%), Gaps = 29/279 (10%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGP 62
           +  ++E+     +  +T  +  G  EA   L+  +E  K          +    VL  GP
Sbjct: 193 KEFNKENVPEKNV--KTFNDVKGCDEAKEELEEIVEYLKNPAKFTRLGGKLPKGVLLTGP 250

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIA------KAGDLAALLTNLEDRD--VLFIDEI 114
           PG GKT LA+ +A E GV F   +G           A  + +L    + +   ++FIDEI
Sbjct: 251 PGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIVFIDEI 310

Query: 115 HRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-- 172
             +    ++      +     L+  +G  A    I L      AAT     L   L    
Sbjct: 311 DAVGGSRKQWEGHTKKTLNQLLVEMDGFDANEGIIVL------AATNLPETLDPALTRPG 364

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           RF   + ++  + +  K I+    +   LA   +           +      ++      
Sbjct: 365 RFDRHVVVSNPDSKGRKEILNLYLQDKPLADDVDVQMLARGTPGFSGADLANMVNMAAVK 424

Query: 233 AEVAHAKTITREIADAA----LLRLAIDKMGFDQLDLRY 267
           A V     IT +  + A    L+      M   +   + 
Sbjct: 425 AAVDGIDKITNKQLEFAKDKLLMGTERKSMALTEESRKL 463


>gi|332372578|gb|AEE61431.1| unknown [Dendroctonus ponderosae]
          Length = 424

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 47/258 (18%), Positives = 87/258 (33%), Gaps = 22/258 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVARE 77
           T E+  G     + L+  ++      +            VLF GPPG GKT LA+ +A E
Sbjct: 88  TWEDIGGLASVKNELQELVQYPVEHPDKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANE 147

Query: 78  LGVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
              NF S  GP +         A   D+     +     VLF DE+  ++      +  A
Sbjct: 148 CQANFISVKGPELLTMWFGESEANVRDIFDKARSAAP-CVLFFDELDSIAKSRGGNVGDA 206

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
                 D ++ +  +            +I AT R  ++   +    R    I +   + +
Sbjct: 207 --GGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEK 264

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I +   + + +A   +      +    +      + +R    A     +   R   
Sbjct: 265 SREQIFRANLRKSPVAKDVDLVYIAKVTHGFSGADLTEICQRACKLAIRQSIEAEIRRER 324

Query: 247 DAALLRLAIDKMGFDQLD 264
           + A    +   M  D+ D
Sbjct: 325 ERAGNAASAAAMDLDEDD 342


>gi|325968403|ref|YP_004244595.1| ATPase AAA [Vulcanisaeta moutnovskia 768-28]
 gi|323707606|gb|ADY01093.1| AAA family ATPase [Vulcanisaeta moutnovskia 768-28]
          Length = 885

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/186 (22%), Positives = 72/186 (38%), Gaps = 23/186 (12%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARA--------EALDHVLFVGPPGLGKTTLAQVVARE 77
           T ++     E    +  +I A   R         E +  +L  GPPG+GKT +A+  A  
Sbjct: 618 TWDDVGDLEEVKEVINKYIVATMQRRDILERLGIEPIHGILLFGPPGVGKTLVAKATANM 677

Query: 78  LGVNFRSTSGPVIAKAGDLAA------LLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
           L  NF   +G  +A+ G   A      +     D    ++FIDEI  ++   +  +   +
Sbjct: 678 LKANFIELNGAELARVGPERAAAVVKDVFNMARDNTPAIIFIDEIDSVAPPRDSPIG-GV 736

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
               +  ++ E          L+   +IAAT R   +   L    RF   I +     + 
Sbjct: 737 WSGVISQLLTE----MDGLRGLNNVIVIAATNRPWFVDPALLRPGRFDKVIYIPPPNKDA 792

Query: 188 LKTIVQ 193
            + I++
Sbjct: 793 RREIIR 798



 Score = 52.4 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 65/334 (19%), Positives = 117/334 (35%), Gaps = 53/334 (15%)

Query: 28  EEFTGQVEACS--------NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +   G  +  S         L+    + K     +  VL  GPPG+GKT LA+ +A +LG
Sbjct: 343 DNVVGLEDVKSEIETSVITPLRDSRLSQKYGLMPIHGVLLFGPPGVGKTMLARAIAGKLG 402

Query: 80  VNFRSTS---------GPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV----EEILY 126
                 +         G    +  +L  +  N     ++ IDE   +         + + 
Sbjct: 403 WTTIIMNLGELLSKYYGESENRLAELFKIAKNYAPSVII-IDEFDAIGKARTRYVSDDVT 461

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
           P + +  L  M G      ++        +I  T +  LL   L    RF   I +    
Sbjct: 462 PRLLNILLSEMDGITKGNENI-------LVIGTTNQPDLLDPALLRPGRFDKVIYVPPPN 514

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA---EVAHAKTI 241
            E    +++            + + + A  ++ + R  G  +  V   A    +   K I
Sbjct: 515 EETRAKMLE----TMLRDKPIQGSIDYAKLAKLSDRFTGADIMNVVRTAVLESLKDGKPI 570

Query: 242 TREIADAALLRLAIDKMGFDQLDL----RYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
           T+E  +  + R     + +D L+     R      R FG   VGI  I     +    +E
Sbjct: 571 TQEKLEEIINRYKP-SLTYDLLEKYEAFRLQYSRLRTFGKAQVGIPEI---TWDDVGDLE 626

Query: 298 DLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDI 331
           ++ E   +   +I  T + R ++      LGI+ 
Sbjct: 627 EVKE---VINKYIVATMQRRDILER----LGIEP 653


>gi|315104914|gb|EFT76890.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL050PA2]
          Length = 717

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 64/276 (23%), Positives = 96/276 (34%), Gaps = 26/276 (9%)

Query: 24  PR-TLEEFTGQVEACSNLKVFIE-----AAKARAEA--LDHVLFVGPPGLGKTTLAQVVA 75
           P+ T  +  G  EA   L+   E     A   R  A     VL  GPPG GKT LA+ VA
Sbjct: 162 PKSTFADVAGCQEAIDELQEIREFLAEPAKFQRVGAKIPKGVLLYGPPGTGKTLLARAVA 221

Query: 76  RELGVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
            E GV F S SG            ++  DL           ++FIDEI  +       + 
Sbjct: 222 GEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKEAAP-AIIFIDEIDAVGRHRGAGMG 280

Query: 127 PAMEDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNF 182
              ++ +  L  ++ E               LIAAT R  +L   L    RF   I +  
Sbjct: 281 GGHDEREQTLNQLLVEMDGFDVHGG----VILIAATNRPDVLDPALLRPGRFDRQIAVEA 336

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            +++    I++  A    +A   + A         T      +L         A+   I 
Sbjct: 337 PDLDGRLKILKVHAHGKPMADDVDLASIARRTPGMTGADLANVLNEAALLTARANLPVIG 396

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
               D A+ R+        +L   +  ++     GG
Sbjct: 397 NAELDEAIDRVIAGPQKKTRLMNEHERLVTAYHEGG 432


>gi|217972946|ref|YP_002357697.1| DNA polymerase III subunits gamma and tau [Shewanella baltica
           OS223]
 gi|217498081|gb|ACK46274.1| DNA polymerase III, subunits gamma and tau [Shewanella baltica
           OS223]
          Length = 1115

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 49/241 (20%), Positives = 75/241 (31%), Gaps = 55/241 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQV-------- 73
           RP T ++  GQ      L   +       + L H  LF G  G+GKT+LA++        
Sbjct: 11  RPATFDQMVGQSHVLHALTNALS-----QQRLHHAYLFTGTRGVGKTSLARLFAKGLNCE 65

Query: 74  ----------------VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRD------VLFI 111
                           +A+   V+          K  D   LL N++ R       V  I
Sbjct: 66  QGVTATPCGVCGSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPTRGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSRSSFNALLKTLEE------------------PPEHVKFLLATTDPQKLPVTVL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L      ++ T +             EA   +A  + G+ R A  L  +   
Sbjct: 168 SRC-LQFNLKSLTQGEIGTQLNHILTQEQFPFDAEALKLLAKAANGSMRDALSLTDQAIA 226

Query: 232 F 232
           F
Sbjct: 227 F 227


>gi|198457521|ref|XP_001360696.2| GA15351 [Drosophila pseudoobscura pseudoobscura]
 gi|198136008|gb|EAL25271.2| GA15351 [Drosophila pseudoobscura pseudoobscura]
          Length = 801

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 46/257 (17%), Positives = 84/257 (32%), Gaps = 28/257 (10%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVAR 76
            T  +  G       L+  ++      +            VLF GPPG GKT LA+ +A 
Sbjct: 471 TTWTDIGGLESVKKELQELVQYPVEHPDKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIAN 530

Query: 77  ELGVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127
           E   NF S  GP +         A   D+     +     VLF DE+  ++      +  
Sbjct: 531 ECQANFISVKGPELLTMWFGESEANVRDIFDKARSAAP-CVLFFDELDSIAKARGGNVGD 589

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           A      D ++ +  +            +I AT R  ++   +    R    I +   + 
Sbjct: 590 A--GGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDD 647

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA------EVAHAK 239
           +  + I++   + + LA   +      +    +      + +R    A           +
Sbjct: 648 KSREAILKANLRKSPLAKEVDLTYIAKVTQGFSGADLTEICQRACKLAIRQAIEAEIRRE 707

Query: 240 TITREIADAALLRLAID 256
               E  +AA+     D
Sbjct: 708 KDRAENQNAAMDMDEED 724



 Score = 51.6 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 48/254 (18%), Positives = 84/254 (33%), Gaps = 31/254 (12%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARA--------EALDHVLFVGPPGLGKTTLAQVVARELG 79
           ++  G  +  + +K  +E              +    +L  GPPG GKT +A+ VA E G
Sbjct: 201 DDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVANETG 260

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMED 131
             F   +GP I          +L       E     ++FIDEI  ++   ++        
Sbjct: 261 AFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAIIFIDEIDAIAPKRDKTHGEVERR 320

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ-----DRFGIPIRLNFYEIE 186
               L+       +S     S   ++AAT R   +   L+     DR       +     
Sbjct: 321 IVSQLLTLMDGMKKS-----SHLIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRL 375

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGT-----PRIAGRLLRRVRDFAEVAHAKTI 241
           ++  I  +  KL      ++ A E                A + +R   D  ++   K  
Sbjct: 376 EVLRIHTKNMKLHEDVDLEQIAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDKID 435

Query: 242 TREIADAALLRLAI 255
              +A  A+     
Sbjct: 436 AEVLASLAVTMENF 449


>gi|152990824|ref|YP_001356546.1| ATP-dependent zinc metalloproteinase [Nitratiruptor sp. SB155-2]
 gi|151422685|dbj|BAF70189.1| ATP-dependent zinc metalloproteinase [Nitratiruptor sp. SB155-2]
          Length = 552

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 46/190 (24%), Positives = 74/190 (38%), Gaps = 22/190 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE-------ALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  E    L+  I+  K   +           VL VGPPG+GKT +A+ VA E 
Sbjct: 152 TFDDVAGIDEVKEELEEIIDFLKDPKKYTSFGVRMPKGVLLVGPPGVGKTLIAKAVAGEA 211

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAME 130
           GV F   SG           A  +  L    ++    ++FIDEI  +       +     
Sbjct: 212 GVPFFYQSGSAFVQIYVGMGAKRVRELFKKAKEMAPSIVFIDEIDAVGKAR-GGMRNDER 270

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
           +  L+ ++ E     +     S   +I AT ++ +L   L    RF   I +     ED 
Sbjct: 271 EATLNQLLTEMDGFEAS----SGVIVIGATNKIEVLDEALLRPGRFDRRIYVALPNKEDR 326

Query: 189 KTIVQRGAKL 198
             I++   + 
Sbjct: 327 MKILKIYLRK 336


>gi|24373576|ref|NP_717619.1| DNA polymerase III, gamma and tau subunits [Shewanella oneidensis
           MR-1]
 gi|24347898|gb|AAN55063.1|AE015643_10 DNA polymerase III, gamma and tau subunits [Shewanella oneidensis
           MR-1]
          Length = 1002

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 56/270 (20%), Positives = 82/270 (30%), Gaps = 60/270 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP T E+  GQ      L   +       + L H  LF G  G+GKT+LA++ A+ L   
Sbjct: 11  RPATFEQMVGQSHVLHALTNALT-----QQRLHHAYLFTGTRGVGKTSLARLFAKGLNCE 65

Query: 82  F------------------------RSTSGPVIAKAGDLAALLTNLEDRD------VLFI 111
                                             K  D   LL N++ R       V  I
Sbjct: 66  TGVTASPCGVCGSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPTRGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSRSSFNALLKTLEE------------------PPEHVKFLLATTDPQKLPVTVL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L     +++ T +Q       L    EA   +A  + G+ R A  L     D
Sbjct: 168 SRC-LQFNLKSLTQQEIGTQLQHILTQEQLPFEHEALGLLAKSANGSMRDALSL----TD 222

Query: 232 FAEVAHAKTITREIADAAL-LRLAIDKMGF 260
            A      T+      + L        +G 
Sbjct: 223 QAIAFGGGTVMLNQVQSMLGSIDEQHVLGL 252


>gi|15920689|ref|NP_376358.1| replication factor C large subunit [Sulfolobus tokodaii str. 7]
 gi|15621472|dbj|BAB65467.1| 413aa long hypothetical replication factor C large subunit
           [Sulfolobus tokodaii str. 7]
          Length = 413

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 72/202 (35%), Gaps = 34/202 (16%)

Query: 43  FIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTN 102
           +IE+          VL  GPPG+GKTTLA+ +AR+  +     +        D+  +   
Sbjct: 3   WIESWLKGKPNYKAVLLYGPPGVGKTTLAEALARDYKLELFEMNASDSRNLNDIRTMAER 62

Query: 103 LE--------DRDVLFIDEIHRLSIIVE----EILYPAMEDFQLDLMVGEG-PSARSVKI 149
                        ++ +DE+  L+   +    + +   +   +  +++    P   S++ 
Sbjct: 63  ASITGTIFGIKGKLILLDEVDGLNARADAGAIDAILELINKTKYPIILTANDPWDPSLRP 122

Query: 150 NLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAAC 209
             +   +I                              LK I+++  +   +   DEA  
Sbjct: 123 LRNAVKMIELKRLTKY---------------------PLKRILKKICEAEKITCEDEALD 161

Query: 210 EIAMRSRGTPRIAGRLLRRVRD 231
            I  +S G  R A  +L+ V +
Sbjct: 162 FIIEQSEGDARYAINMLQGVAE 183


>gi|283954716|ref|ZP_06372233.1| DNA polymerase III [Campylobacter jejuni subsp. jejuni 414]
 gi|283793769|gb|EFC32521.1| DNA polymerase III [Campylobacter jejuni subsp. jejuni 414]
          Length = 511

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 52/235 (22%), Positives = 86/235 (36%), Gaps = 27/235 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     RP+T +E  GQ     +LK  +         L H  LF G  G GKT+ A++ +
Sbjct: 4   ALAIKYRPKTFDELIGQKTVSVSLKYAL-----NHNRLAHAYLFSGLRGSGKTSSARIFS 58

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHR-----LSIIVEEILY-P 127
           R L        GP     G     L  LE +  D++ +D         +  ++E+  Y P
Sbjct: 59  RALVCE----QGPSDTPCGICKHCLAALEGKHIDIIEMDAASNRGLEDIQTLIEQTKYTP 114

Query: 128 AMEDFQLDLMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +M  F++ ++               ++++   S    I ATT    L   +  R      
Sbjct: 115 SMARFKIFIIDEVHMLTPQAANALLKTLEEPPSYVKFILATTDPLKLPATVLSRTQHFRF 174

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
               + E L   ++       +   +EA   IA    G+ R    LL +   F +
Sbjct: 175 KQIPQSEIL-NHLKEILLKENVKFEEEALKFIARSGNGSLRDTLTLLDQAIIFCQ 228


>gi|302878404|ref|YP_003846968.1| DNA polymerase III, subunits gamma and tau [Gallionella
           capsiferriformans ES-2]
 gi|302581193|gb|ADL55204.1| DNA polymerase III, subunits gamma and tau [Gallionella
           capsiferriformans ES-2]
          Length = 571

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 55/320 (17%), Positives = 110/320 (34%), Gaps = 32/320 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+   +  GQ          +  A ++       LF G  G+GKTT+A++ A+ L    
Sbjct: 12  RPKNFAQLAGQEHVV----RALGNALSQNRLHHAYLFTGTRGVGKTTIARIFAKSLNCLT 67

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAMEDFQLD 135
             T+ P     G  +A       R V  I+       ++  +  ++E  LY         
Sbjct: 68  GITATP----CGVCSACTEIDSGRFVDLIELDAASNTQVDNMRELLESALYAPTSARFKV 123

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             ++++   +    I ATT    +   +  R  +   L      
Sbjct: 124 YIIDEVHMLSKSAFNAMLKTLEEPPAHVKFILATTDPQKIPVTVLSRC-LQFNLKQLPPA 182

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
            +   +Q       +     A   +A  ++G+ R A  L  +   F+     ++  R   
Sbjct: 183 LIVAHLQHVLTEEHIEFEPAALNLVARAAQGSMRDALSLTDQAIAFSSGKLEESAMR-SM 241

Query: 247 DAALLRLAIDKM--GFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
             A+ +  + ++     + +   L  +A +     +  +   A L E    +  +     
Sbjct: 242 LGAIDQGYLFELLHALHRQNGADLLGVAESMATRSIAFD---AALQELASLLHRIALAQT 298

Query: 305 IQQGFIQRTP-RGRLLMPIA 323
           + Q   +  P RGR+L   A
Sbjct: 299 VPQAIAEDDPERGRVLELAA 318


>gi|225464698|ref|XP_002277539.1| PREDICTED: hypothetical protein isoform 3 [Vitis vinifera]
          Length = 730

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/218 (20%), Positives = 79/218 (36%), Gaps = 43/218 (19%)

Query: 9   SRNVSQEDADISLLRPR---------TLEEFTGQVEACSNLKVFIEAAKARAEALDH--- 56
           S+ V  ++     +RP          T ++     +   +L+  +     R +       
Sbjct: 389 SKEVPPDNEFEKRIRPEVIPANEIGVTFDDIGALSDIKESLQELVMLPLRRPDLFKGGLL 448

Query: 57  -----VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLED 105
                +L  GPPG GKT LA+ +A E G +F + S   I          ++ AL T    
Sbjct: 449 KPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAK 508

Query: 106 --RDVLFIDEIH-----RLSIIVEEILYPAMEDF---QLDLMVGEGPSARSVKINLSRFT 155
               ++F+DE+      R  +   E +     +F      L+   G           R  
Sbjct: 509 VSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTKAG----------ERIL 558

Query: 156 LIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           ++AAT R   L   +  RF   I +    +E  + I++
Sbjct: 559 VLAATNRPFDLDEAIIRRFERRIMVGLPSVESREMILK 596


>gi|195379959|ref|XP_002048738.1| GJ21209 [Drosophila virilis]
 gi|194143535|gb|EDW59931.1| GJ21209 [Drosophila virilis]
          Length = 801

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 84/257 (32%), Gaps = 28/257 (10%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVAR 76
            T  +  G       L+  ++      +            VLF GPPG GKT LA+ +A 
Sbjct: 471 TTWTDIGGLENVKKELQELVQYPVEHPDKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIAN 530

Query: 77  ELGVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127
           E   NF S  GP +         A   D+     +     VLF DE+  ++      +  
Sbjct: 531 ECQANFISVKGPELLTMWFGESEANVRDIFDKARSAAP-CVLFFDELDSIAKARGGNVGD 589

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           A      D ++ +  +            +I AT R  ++   +    R    I +   + 
Sbjct: 590 A--GGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDD 647

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA------EVAHAK 239
           +  + I++   + + LA   +      +    +      + +R    A           +
Sbjct: 648 KSREAILKANLRKSPLAKEVDLTYIAKVTQGFSGADLTEICQRACKLAIRQAIEAEIRRE 707

Query: 240 TITREIADAALLRLAID 256
               E  ++A+     D
Sbjct: 708 KDRAENQNSAMDMDEDD 724



 Score = 51.6 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 48/254 (18%), Positives = 84/254 (33%), Gaps = 31/254 (12%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARA--------EALDHVLFVGPPGLGKTTLAQVVARELG 79
           ++  G  +  + +K  +E              +    +L  GPPG GKT +A+ VA E G
Sbjct: 201 DDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVANETG 260

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMED 131
             F   +GP I          +L       E     ++FIDEI  ++   ++        
Sbjct: 261 AFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAIIFIDEIDAIAPKRDKTHGEVERR 320

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ-----DRFGIPIRLNFYEIE 186
               L+       +S     S   ++AAT R   +   L+     DR       +     
Sbjct: 321 IVSQLLTLMDGMKKS-----SHLIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRL 375

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGT-----PRIAGRLLRRVRDFAEVAHAKTI 241
           ++  I  +  KL      ++ A E                A + +R   D  ++   K  
Sbjct: 376 EVLRIHTKNMKLHEDVDLEQIAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDKID 435

Query: 242 TREIADAALLRLAI 255
              +A  A+     
Sbjct: 436 AEVLASLAVTMENF 449


>gi|297741681|emb|CBI32813.3| unnamed protein product [Vitis vinifera]
          Length = 956

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/151 (25%), Positives = 62/151 (41%), Gaps = 32/151 (21%)

Query: 1   MMDREGLLSRNVSQEDADISLL--RPRTLEEFT------------GQVEACSNLKVFIEA 46
           +M+ E +L   V+ ED + + +  RP  + E              GQ E  + L   +E 
Sbjct: 628 IMEEECML--VVTFEDFEKARMKIRPSAMREVILEVPRVKWEDVGGQNEVKAQLMEAVEW 685

Query: 47  AKARAEALD--------HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AK 92
            +   +A           VL  GPPG  KT +A+ VA E G+NF +  GP +        
Sbjct: 686 PQKHQDAFKRIGTRPPTGVLLFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGES 745

Query: 93  AGDLAALLTNLEDR--DVLFIDEIHRLSIIV 121
              + +L          ++F DEI  L++I 
Sbjct: 746 EKAVRSLFAKARANAPSIIFFDEIDGLAVIR 776



 Score = 41.2 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 39/145 (26%), Positives = 59/145 (40%), Gaps = 21/145 (14%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLED--RDV 108
           VL  GPPG GKT+LAQ+   + GVN  S +G  I           L  +  +       V
Sbjct: 437 VLLHGPPGTGKTSLAQLCICDAGVNLFSVNGAEIVSQYYGESEQALHEIFDSASQAAPAV 496

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +FIDE+  ++   ++            L+      +R+  I +     IAAT R   +  
Sbjct: 497 VFIDELDAIAPARKDGGEELSHRIVATLLNLMDGISRTDGILV-----IAATNRPDSIEP 551

Query: 169 PLQ-----DR---FGIPIRLNFYEI 185
            L+     DR    G+P     Y+I
Sbjct: 552 ALRRPGRLDREMEIGVPSPGQRYDI 576


>gi|254585629|ref|XP_002498382.1| ZYRO0G08910p [Zygosaccharomyces rouxii]
 gi|238941276|emb|CAR29449.1| ZYRO0G08910p [Zygosaccharomyces rouxii]
          Length = 1121

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 59/273 (21%), Positives = 97/273 (35%), Gaps = 42/273 (15%)

Query: 25  RTLEE-FTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNF 82
           +TL+E   G  +    +  FI   K   +    +L FVGPPG+GKT++ + +AR L   F
Sbjct: 579 KTLDEDHYGMNDVKDRILEFIAVGKLLGKVDGKILCFVGPPGVGKTSIGKSIARSLNRKF 638

Query: 83  RSTSGPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRL--------- 117
            S S   +    ++                           ++ IDEI ++         
Sbjct: 639 FSFSVGGLTDVAEIKGHRRTYIGALPGRVIQALKKCQTQNPLILIDEIDKIGHAGIHGDP 698

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           S  + E+L P      LD  +        + I+LSR   +     +  +  PL DR  + 
Sbjct: 699 SAALLEVLDPEQNSNFLDNYL-------DISIDLSRVLFVCTANTLDTIPRPLLDRMEV- 750

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
           I L  Y  ED   I +   +    +    A  E A        I   + +  R+      
Sbjct: 751 IELTGYVAEDKVKIAE---QYLSPSAKRAAGLENANVDLAEDAIRSLMRKYCRESGVRNL 807

Query: 238 AKTITREIADAAL----LRLAIDKMGFDQLDLR 266
            K I +    AAL         D    D+ +++
Sbjct: 808 KKHIEKIYRKAALNVVKQLSMDDSPRIDKENVK 840


>gi|124027197|ref|YP_001012517.1| ATPases of AAA+ class, SpoVK, putative cell division [Hyperthermus
           butylicus DSM 5456]
 gi|123977891|gb|ABM80172.1| ATPases of AAA+ class, SpoVK, putative cell division [Hyperthermus
           butylicus DSM 5456]
          Length = 737

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 51/210 (24%), Positives = 81/210 (38%), Gaps = 25/210 (11%)

Query: 3   DREGLLSRNVSQEDADISLLRPR-TLEEFTGQVEACSNLKVFIEAAKARAEALDH----- 56
           D E  +     +E+     + PR T E+     EA   ++  +E      E  +H     
Sbjct: 166 DTEIEIREEPVREERIHRGI-PRVTWEDIGDLEEAKEKIREIVELPMKHPELFEHLGIEP 224

Query: 57  ---VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR- 106
              +L  GPPG+GKT LA+ +A E+G  F + +GP I           L  +    E   
Sbjct: 225 PKGILLYGPPGVGKTLLAKALANEIGAYFIAINGPEIMSKYYGESEQRLREIFEEAEKNA 284

Query: 107 -DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
             ++FIDEI  ++   EE+     +     L+               R  +I AT R   
Sbjct: 285 PSIIFIDEIDAIAPRREEVTGEVEKRVVAQLLT-----LMDGLKERGRVIVIGATNRPDA 339

Query: 166 LTNPLQD--RFGIPIRLNFYEIEDLKTIVQ 193
           +   L+   RF   I +   +    K I+Q
Sbjct: 340 IDPALRRPGRFDREIEIRPPDKRARKEILQ 369



 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 56/256 (21%), Positives = 94/256 (36%), Gaps = 27/256 (10%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARELG 79
           ++  G  +    L+  IE      E            +L  GPPG GKT LA+  A E G
Sbjct: 465 DDIGGLDDVKQQLREAIEWPLTHPELFEQMGVRPPKGILLFGPPGTGKTLLAKAAATESG 524

Query: 80  VNFRSTSGPVI--AKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMED 131
            NF +  GP I     G+    +  +  R       ++F DEI  ++             
Sbjct: 525 ANFIAVRGPEILSKWVGESEKAIRQIFRRARQVAPAIIFFDEIDAIAPARG---MRYDTS 581

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
              D +V +  +       L+   +IAAT R  +L   L    RF   I +   + +   
Sbjct: 582 GVTDRIVNQLLTEMDGIEPLTNVVVIAATNRPDILDPALLRPGRFDRLIYVPPPDKKSRL 641

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV-RDFAEVAHAKTITREIADA 248
            I++   +   LA       ++ + +  T    G  L  V R+ A +A  +T  +     
Sbjct: 642 EILRIHTRRMPLAED----VDLELIAEKTEGYTGADLEAVCREAAMIALRETFKKTGKPQ 697

Query: 249 A-LLRLAIDKMGFDQL 263
           A L+R+   +     +
Sbjct: 698 AVLVRMEHFEKALQAI 713


>gi|332702893|ref|ZP_08422981.1| ATP-dependent metalloprotease FtsH [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332553042|gb|EGJ50086.1| ATP-dependent metalloprotease FtsH [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 628

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 55/250 (22%), Positives = 98/250 (39%), Gaps = 27/250 (10%)

Query: 25  RTLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
            T ++  G   A   L+  +          +  A+    VL VGPPG GKT LA+ VA E
Sbjct: 174 TTFDDVAGAEGAKEELQEIVTFLKDPGRVRRLGAQVPRGVLLVGPPGCGKTLLARAVAGE 233

Query: 78  LGVNFRSTSGPVIA------KAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
            GV F S +G           A  + +L  + +     ++FIDE+  +       L    
Sbjct: 234 AGVPFFSITGSDFMEMFVGVGASRVRSLFEDAKKNTPSIIFIDELDSIGRKRGAGLGGGH 293

Query: 130 EDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           ++ +  L  ++ E               +++AT R  +L   L    RF   + +     
Sbjct: 294 DEREQTLNQLLSELDGFEQSH----DVIVMSATNRPDILDPALLRPGRFDRRVTIPLPTT 349

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           +    I++  A+   +A       ++   +RGTP  +G  LR + + A +  A+   +EI
Sbjct: 350 KARLEILRIHARNKPMAQD----IDLNALARGTPGFSGADLRNLLNEAALMAARYDRKEI 405

Query: 246 ADAALLRLAI 255
               + +   
Sbjct: 406 LREDVEQARD 415


>gi|302501939|ref|XP_003012961.1| hypothetical protein ARB_00844 [Arthroderma benhamiae CBS 112371]
 gi|291176522|gb|EFE32321.1| hypothetical protein ARB_00844 [Arthroderma benhamiae CBS 112371]
          Length = 417

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/244 (14%), Positives = 79/244 (32%), Gaps = 31/244 (12%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
                   +   RP TL++ +G  +  + +  F+++ +     L H+L  GPPG GKT+ 
Sbjct: 40  EAGDNLPWVEKYRPDTLDDVSGHQDIIATINRFVDSNR-----LPHLLLYGPPGTGKTST 94

Query: 71  AQVVAR------ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI----- 119
              +AR       +       +         +   +       +++       S+     
Sbjct: 95  ILALARRIYGSKNMRQMVLELNASDDRGIDVVREQIKTFASTSLVYKGRSEAESLTAIIV 154

Query: 120 ------IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRF--------TLIAATTRVGL 165
                          +  F+L ++        + ++ L R                    
Sbjct: 155 GTKQIFSTAPSSGSGLGAFKLIILDEADAMTSAAQMALRRIMEKYTANTRFCIIANYTHK 214

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           L+  L  R     R +  + +D++ +V    +   + +  +A   +   S+G  R A  +
Sbjct: 215 LSPALLSRC-TRFRFSPLKEKDIRRLVDTVIEKEEVQIQPDAIDSLVKLSKGDMRRALNV 273

Query: 226 LRRV 229
           L+  
Sbjct: 274 LQAC 277


>gi|262037377|ref|ZP_06010842.1| ATP-dependent protease LonB [Leptotrichia goodfellowii F0264]
 gi|261748634|gb|EEY36008.1| ATP-dependent protease LonB [Leptotrichia goodfellowii F0264]
          Length = 590

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 55/279 (19%), Positives = 98/279 (35%), Gaps = 45/279 (16%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  E    +  F+   K        ++  VGPPG+GKT+LA  VAR +   F   S
Sbjct: 317 EDHYGLTEVKERILEFLAVKKLNNTLKGSIICLVGPPGVGKTSLANSVARSMNRKFTRIS 376

Query: 87  GPVIAKAGDLA------------ALLTNLED----RDVLFIDEIHRL--------SIIVE 122
              +    ++              L+ +L+       V+  DEI ++        +  + 
Sbjct: 377 LGGLRDEAEIRGHRRTYIGSMPGRLINSLKQVGVNNPVMLFDEIDKMASDFRGDPASAML 436

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L PA      D  +           +LS+   I     +G +  PL+DR  I    ++
Sbjct: 437 EVLDPAQNHTFEDHYI-------DYPFDLSKVFFICTANDLGGIPGPLRDRMEIISIESY 489

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            E E L       AK   +  T     E  ++    P     + + + ++   A  + + 
Sbjct: 490 TEFEKL-----NIAKKYLIPQTQ---EENGLKDYKIPFSDASIFKIINEYTREAGVRNLR 541

Query: 243 REIADAALLRLAIDKMGFDQLDLRYL--TMIARNFGGGP 279
           REI+          K        +        +++ G P
Sbjct: 542 REISKLFRKMA---KEALTSKSRKLSVTEAKIKDYLGNP 577


>gi|241767459|ref|ZP_04765151.1| DNA polymerase III, subunits gamma and tau [Acidovorax delafieldii
           2AN]
 gi|241361752|gb|EER58047.1| DNA polymerase III, subunits gamma and tau [Acidovorax delafieldii
           2AN]
          Length = 377

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/299 (15%), Positives = 81/299 (27%), Gaps = 78/299 (26%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARE 77
               RPR   E  GQ      L   +       + L H  LF G  G+GKTT+++++A+ 
Sbjct: 7   ARKYRPRNFTEMVGQEHVVQALTNALT-----QQRLHHAYLFTGTRGVGKTTVSRILAKS 61

Query: 78  LGVN-----------------------------FRSTSGPVIAKAGDLAALLTNL----- 103
           L                                +            ++ +LL        
Sbjct: 62  LNCQGPDGQGGITATPCGVCQACTDIDSGRFVDYTELDAASNRGVDEVQSLLEQAVYKPV 121

Query: 104 -EDRDVLFIDEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAAT 160
                V  IDE+H L+      +   +E+    L  ++      +     LSR       
Sbjct: 122 QGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNLR 181

Query: 161 TRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPR 220
                                    E + + + +      +    +A   ++  +RG+ R
Sbjct: 182 PMA---------------------PETVLSHLTQVLAAENVPAEPQALRLLSRAARGSMR 220

Query: 221 IAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGP 279
            A  L     D A    +  +        L  +          D  Y+  +      G 
Sbjct: 221 DALSL----TDQAIAFGSGQLQEAAVRQMLGAV----------DRSYVFRLIDALAQGD 265


>gi|225678578|gb|EEH16862.1| replication factor C subunit 4 [Paracoccidioides brasiliensis
          Pb03]
          Length = 387

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 5/75 (6%)

Query: 4  REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPP 63
          +E L       E   +   RP  L++  G  E    LK+      AR   + HV+  G P
Sbjct: 16 QENLAGAPPDYELPWVEKYRPVYLDDIVGNTETIERLKII-----ARDGNMPHVIISGMP 70

Query: 64 GLGKTTLAQVVAREL 78
          G+GKTT    +AR++
Sbjct: 71 GIGKTTSILCLARQM 85


>gi|49473886|ref|YP_031928.1| DNA polymerase III subunits gamma and tau [Bartonella quintana str.
           Toulouse]
 gi|49239389|emb|CAF25723.1| DNA polymerase III subunit tau [Bartonella quintana str. Toulouse]
          Length = 640

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 83/231 (35%), Gaps = 21/231 (9%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+   +  GQ      L    E  +         +  G  G+GKTT A+++AR L
Sbjct: 14  ARKYRPQNFSDLIGQETMVRTLTNAFETGRIAQAW----MLTGIRGVGKTTTARILARAL 69

Query: 79  GVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
               +    P  V+   G+    +      DV+ +D      I  +  I+E+I Y  +  
Sbjct: 70  NYKTKDIDQPTTVLNTLGEHCTQIIEGRHIDVIEMDAASHTGIDDIREIIEQIRYRPVSA 129

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT +  +   +  R      L  
Sbjct: 130 RYKVYIIDEVHMLSTQAFNGLLKTLEEPPPHVKFIFATTEIRKVPITILSRCQ-RFDLRR 188

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
            E   L   + + AK   + V D+A   IA  + G+ R A  +  +   ++
Sbjct: 189 IETAVLSAHLCQIAKHENVKVEDQALSMIARAAEGSARDALSIFDQAIAYS 239


>gi|307243867|ref|ZP_07525992.1| ATP-dependent metallopeptidase HflB [Peptostreptococcus stomatis
           DSM 17678]
 gi|306492689|gb|EFM64717.1| ATP-dependent metallopeptidase HflB [Peptostreptococcus stomatis
           DSM 17678]
          Length = 631

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 46/186 (24%), Positives = 74/186 (39%), Gaps = 22/186 (11%)

Query: 26  TLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           + ++  GQ EA   L   +       +  +  A+     L VGPPG GKT LAQ VA E 
Sbjct: 163 SFDDVAGQDEAKEALSEIVDFLHDPGKYTEIGAKMPKGALLVGPPGTGKTLLAQAVAGEA 222

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG           A  +  L    +++   ++FIDEI  +    +       E
Sbjct: 223 GVPFFSISGSEFVEMFVGMGASRVRDLFKQAKEKAPCIVFIDEIDAIGKKRDANFGGNDE 282

Query: 131 -DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            +  L+ ++ E               ++AAT R   L   L    RF   + +   ++  
Sbjct: 283 REQTLNQLLSEMDGFEDGIG----VVILAATNRPDSLDKALLRPGRFDRRVPVELPDLNG 338

Query: 188 LKTIVQ 193
            + I++
Sbjct: 339 REAILK 344


>gi|302875741|ref|YP_003844374.1| ATP-dependent metalloprotease FtsH [Clostridium cellulovorans 743B]
 gi|307689172|ref|ZP_07631618.1| ATP-dependent metalloprotease FtsH [Clostridium cellulovorans 743B]
 gi|302578598|gb|ADL52610.1| ATP-dependent metalloprotease FtsH [Clostridium cellulovorans 743B]
          Length = 579

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 60/264 (22%), Positives = 102/264 (38%), Gaps = 29/264 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           TL +  G  EA  ++   I+  K         A     ++  G PG GKT LA+ VA E 
Sbjct: 147 TLNDIAGNEEAKESVMDIIDFLKNPQKYREYGARMPKGIILYGDPGTGKTLLAKAVAGEA 206

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEIL--YPA 128
           GV F + SG       V   A  +  L        + V+FIDEI  +             
Sbjct: 207 GVPFYAMSGSDFIQVYVGVGASRIRQLFKKARSHGKAVIFIDEIDAIGKARSNSASGGSD 266

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
             D  L+ ++ E       +       ++AAT R+ +L + L    RF   I +   +I 
Sbjct: 267 ERDQTLNALLTEMSGFNETEG----IIVMAATNRLDILDSALLRPGRFDRHIEITLPDIS 322

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I+        L        +I   S+ T   +G  L  + + A +   K  +++I 
Sbjct: 323 AREKILN-----LHLQNKPHENIKIKEWSQKTSYFSGAKLEHLVNEAAILACKDNSKDIL 377

Query: 247 DAALLRLAIDKM-GFDQLDLRYLT 269
           D  + +     + G+D+++  Y+ 
Sbjct: 378 DIHMDKAYSIVLAGYDKMNRDYIK 401


>gi|17137560|ref|NP_477369.1| TER94, isoform A [Drosophila melanogaster]
 gi|122087253|sp|Q7KN62|TERA_DROME RecName: Full=Transitional endoplasmic reticulum ATPase TER94;
           AltName: Full=Valosin-containing protein homolog
 gi|4689330|gb|AAD27852.1|AF132553_1 BcDNA.GM02885 [Drosophila melanogaster]
 gi|7303816|gb|AAF58863.1| TER94, isoform A [Drosophila melanogaster]
 gi|220942716|gb|ACL83901.1| TER94-PA [synthetic construct]
          Length = 801

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 84/257 (32%), Gaps = 28/257 (10%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVAR 76
            T  +  G       L+  ++      +            VLF GPPG GKT LA+ +A 
Sbjct: 471 TTWTDIGGLESVKKELQELVQYPVEHPDKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIAN 530

Query: 77  ELGVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127
           E   NF S  GP +         A   D+     +     VLF DE+  ++      +  
Sbjct: 531 ECQANFISVKGPELLTMWFGESEANVRDIFDKARSAAP-CVLFFDELDSIAKARGGNVGD 589

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           A      D ++ +  +            +I AT R  ++   +    R    I +   + 
Sbjct: 590 A--GGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDD 647

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA------EVAHAK 239
           +  + I++   + + LA   +      +    +      + +R    A           +
Sbjct: 648 KSREAILKANLRKSPLAKEVDLTYIAKVTQGFSGADLTEICQRACKLAIRQAIEAEIRRE 707

Query: 240 TITREIADAALLRLAID 256
               E  ++A+     D
Sbjct: 708 KERAENQNSAMDMDEDD 724



 Score = 52.0 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 50/263 (19%), Positives = 88/263 (33%), Gaps = 38/263 (14%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARA--------EALDHVLFVGPPGLGKTTLAQVVARELG 79
           ++  G  +  + +K  +E              +    +L  GPPG GKT +A+ VA E G
Sbjct: 201 DDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVANETG 260

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMED 131
             F   +GP I          +L       E     ++FIDEI  ++   ++        
Sbjct: 261 AFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAIIFIDEIDAIAPKRDKTHGEVERR 320

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
               L+       +S     S   ++AAT R   +   L+   RF   I +   +     
Sbjct: 321 IVSQLLTLMDGMKKS-----SHLIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRL 375

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            +++   K   L   D    +IA  S G        L               +       
Sbjct: 376 EVLRIHTKNMKLH-DDVDLEQIAAESHGHVGADLASL--------------CSEAALQQI 420

Query: 250 LLRLAIDKMGFDQLDLRYLTMIA 272
             ++ +  +  D++D   L  +A
Sbjct: 421 REKMDLIDLEDDKIDAEVLASLA 443


>gi|327274098|ref|XP_003221815.1| PREDICTED: spermatogenesis-associated protein 5-like [Anolis
           carolinensis]
          Length = 876

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 85/227 (37%), Gaps = 29/227 (12%)

Query: 15  EDADISLLR------PR-TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLF 59
            D   S +R      P+ +  +  G       LK  +E      E            VL 
Sbjct: 590 NDVRPSAMREVAIDVPKVSWSDIGGLENVKLKLKQAVEWPLKHPESFTQMGIQPPKGVLL 649

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DVLFI 111
            GPPG  KT +A+ +A E G+NF +  GP +     G+    +  +  +       +LF 
Sbjct: 650 YGPPGCSKTMIAKALANESGLNFLAVKGPELMNKYVGESERAVREIFRKARAVSPSILFF 709

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DEI  L++   E    +      D ++ +  +       L   T++AAT R  ++   L 
Sbjct: 710 DEIDALAV---ERGSSSSSGNVGDRVLAQLLTEMDGIEQLKDVTILAATNRPDMIDKALM 766

Query: 172 D--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSR 216
              R    I +   +    K I++   +   ++  +    E+  R++
Sbjct: 767 RPGRIDRIIYVPLPDAATRKEILKIQFRTMPIS-DEVYLDELVQRTQ 812



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 73/205 (35%), Gaps = 23/205 (11%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRS 84
           +++ E            +F             VL  GPPG GKT +A+ VA E+G +  +
Sbjct: 346 KSIREII--ELPLKQPDLFRRYGI---PPPRGVLLYGPPGTGKTLIARAVANEVGAHVTT 400

Query: 85  TSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIV---EEILYPAMEDFQ 133
            +GP I           L  +      R   ++FIDEI  L       +      +    
Sbjct: 401 INGPEIISKFYGESEARLRQIFAEASLRRPSIIFIDEIDALCPKREGAQSEFEKRIVASL 460

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTI 191
           L LM G G      ++ +     + AT R   L   L+   RF   I +     ++   I
Sbjct: 461 LTLMDGIGSEGNEGQLLV-----LGATNRPHALDPALRRPGRFDKEIEIGVPNAQNRLDI 515

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSR 216
             +       ++T+    ++A  + 
Sbjct: 516 FNKLLNKVPHSLTETELVQLAESTH 540


>gi|255727749|ref|XP_002548800.1| protein AFG2 [Candida tropicalis MYA-3404]
 gi|240133116|gb|EER32672.1| protein AFG2 [Candida tropicalis MYA-3404]
          Length = 770

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 54/272 (19%), Positives = 99/272 (36%), Gaps = 32/272 (11%)

Query: 8   LSRNVSQEDADISLLR------PR-TLEEFTGQVEACSNL----KVFIEAAKA----RAE 52
           +  N +  +   S +R      P+    +  GQ E    L    ++ +EA+++       
Sbjct: 478 IDVNHALPEIRPSAMREIFLEMPKVHWSDIGGQDELKRKLIEVVQLPLEASQSFANLGVS 537

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR---- 106
           +   VL  GPPG  KT  A+ +A E G+NF +  GP I     G+    +  +  +    
Sbjct: 538 SPKGVLLYGPPGCSKTLTAKALATESGLNFLAVKGPEIFNKYVGESERTIREIFRKARAA 597

Query: 107 --DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164
              ++F DEI  ++   +           L  ++ E          L    ++ AT +  
Sbjct: 598 SPSIIFFDEIDAIAGDRDGDSSTTAASNVLTSLLNEIDGVE----ELKGVVIVGATNKPT 653

Query: 165 LLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
            +   L    R    I +   + E    I+Q+  +   L   + A  ++A  + G     
Sbjct: 654 EIDPALLRPGRLDRHIYVAPPDYEARLQILQKCTRNFNLDKDEVALTKLADLTEGCSGAE 713

Query: 223 GRLLRRVRDFAEVAHAK---TITREIADAALL 251
             LL +    A +   K    + +   D AL 
Sbjct: 714 VTLLCQEAGLAAIMEDKDATVVCKRHFDHALQ 745



 Score = 53.2 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 78/223 (34%), Gaps = 23/223 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEA--------AKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           T ++  G  +    LK  IE         ++        +L  GPPG GKT L + VA  
Sbjct: 233 TYDQVGGLSKEIELLKSTIELPLNNPMLFSEFGITPPRGILLHGPPGTGKTMLLRCVANS 292

Query: 78  L-GVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPA 128
           + G +  + +GP I           +  +    +     ++F+DEI  L+          
Sbjct: 293 IVGAHILTINGPSIVSKYLGETENAIRDIFNEAKKFQPSIVFMDEIDSLAPSRNSD---- 348

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
                   +V +  +      +  R  ++ AT R   + + L+   RF   + +   ++E
Sbjct: 349 DSGETESRVVAQLLTMMDGMGDNGRIVVVGATNRPNAIDSALRRPGRFDQEVEIGIPDVE 408

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
             + I+ +          +    +I   +  T    G  L  +
Sbjct: 409 AREEILSKQFSKMNSDKCELTKEDITRIASKTHGYVGADLTAL 451


>gi|242310140|ref|ZP_04809295.1| zinc metallopeptidase [Helicobacter pullorum MIT 98-5489]
 gi|239523437|gb|EEQ63303.1| zinc metallopeptidase [Helicobacter pullorum MIT 98-5489]
          Length = 642

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 59/251 (23%), Positives = 90/251 (35%), Gaps = 18/251 (7%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           +E     E    LK     A   A+    VL VGPPG GKT LA+ VA E  V F S SG
Sbjct: 190 DEVV---EIVDFLKNPERYAALGAKIPKGVLLVGPPGTGKTLLAKAVAGEANVPFFSVSG 246

Query: 88  P------VIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
                  V   A  +  L  N +     ++FIDEI  +          +  D +   +  
Sbjct: 247 SSFIEMFVGVGASRVRDLFENAKKNAPSIIFIDEIDAIGKSRAAGGMISGNDEREQTLNQ 306

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAK 197
                     + S   ++AAT R  +L   L    RF   + ++  + E    I++   K
Sbjct: 307 LLAEMDGFSSDSSPVIVLAATNRPEVLDPALLRPGRFDRQVLVDKPDFEGRVEILKVHIK 366

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAG-RLLRRVRDFAEVAHAKTITREIADAALLRLAID 256
              L+   +        ++ T  +AG  L   V + A +A             L  +   
Sbjct: 367 NIKLSKNVDLFE----VAKLTAGLAGADLANIVNEAALLAGRNNKKEVEQSDFLEAVERG 422

Query: 257 KMGFDQLDLRY 267
             G ++   R 
Sbjct: 423 IAGLEKKSRRI 433


>gi|260820974|ref|XP_002605809.1| hypothetical protein BRAFLDRAFT_123856 [Branchiostoma floridae]
 gi|229291144|gb|EEN61819.1| hypothetical protein BRAFLDRAFT_123856 [Branchiostoma floridae]
          Length = 362

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 78/227 (34%), Gaps = 38/227 (16%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   +   RP  L +  G  +  S L+VF     ++   + +++  G PG+GKTT    +
Sbjct: 41  ELPWVEKYRPAKLCDVVGNEDTVSRLEVF-----SQQGNMPNIIIAGSPGIGKTTSILCL 95

Query: 75  AR------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIHRLSII 120
           AR            EL  +       V  K    A     L      ++ +DE   ++  
Sbjct: 96  ARTLLGPAYKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDG 155

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            ++ L   ME +                   +RF    A      +   +Q R  +    
Sbjct: 156 AQQALRRTMEIYSKT----------------TRF--ALACNASDKIIEAIQSRCAVLRYS 197

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
              + + L+ ++    +   +  TD+    +   ++G  R A   L+
Sbjct: 198 KLTDNQILERLL-YVCEKENVEHTDDGLEAVIFTAQGDMRQALNNLQ 243


>gi|195332987|ref|XP_002033173.1| GM21173 [Drosophila sechellia]
 gi|195582062|ref|XP_002080847.1| GD10706 [Drosophila simulans]
 gi|194125143|gb|EDW47186.1| GM21173 [Drosophila sechellia]
 gi|194192856|gb|EDX06432.1| GD10706 [Drosophila simulans]
          Length = 801

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 84/257 (32%), Gaps = 28/257 (10%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVAR 76
            T  +  G       L+  ++      +            VLF GPPG GKT LA+ +A 
Sbjct: 471 TTWTDIGGLESVKKELQELVQYPVEHPDKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIAN 530

Query: 77  ELGVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127
           E   NF S  GP +         A   D+     +     VLF DE+  ++      +  
Sbjct: 531 ECQANFISVKGPELLTMWFGESEANVRDIFDKARSAAP-CVLFFDELDSIAKARGGNVGD 589

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           A      D ++ +  +            +I AT R  ++   +    R    I +   + 
Sbjct: 590 A--GGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDD 647

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA------EVAHAK 239
           +  + I++   + + LA   +      +    +      + +R    A           +
Sbjct: 648 KSREAILKANLRKSPLAKEVDLTYIAKVTQGFSGADLTEICQRACKLAIRQAIEAEIRRE 707

Query: 240 TITREIADAALLRLAID 256
               E  ++A+     D
Sbjct: 708 KERAENQNSAMDMDEDD 724



 Score = 52.0 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 50/263 (19%), Positives = 88/263 (33%), Gaps = 38/263 (14%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARA--------EALDHVLFVGPPGLGKTTLAQVVARELG 79
           ++  G  +  + +K  +E              +    +L  GPPG GKT +A+ VA E G
Sbjct: 201 DDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVANETG 260

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMED 131
             F   +GP I          +L       E     ++FIDEI  ++   ++        
Sbjct: 261 AFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAIIFIDEIDAIAPKRDKTHGEVERR 320

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
               L+       +S     S   ++AAT R   +   L+   RF   I +   +     
Sbjct: 321 IVSQLLTLMDGMKKS-----SHLIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRL 375

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            +++   K   L   D    +IA  S G        L               +       
Sbjct: 376 EVLRIHTKNMKLH-DDVDLEQIAAESHGHVGADLASL--------------CSEAALQQI 420

Query: 250 LLRLAIDKMGFDQLDLRYLTMIA 272
             ++ +  +  D++D   L  +A
Sbjct: 421 REKMDLIDLEDDKIDAEVLASLA 443


>gi|193213861|ref|YP_001995060.1| DNA polymerase III gamma and tau subunits [Chloroherpeton
           thalassium ATCC 35110]
 gi|193087338|gb|ACF12613.1| DNA polymerase III, subunits gamma and tau [Chloroherpeton
           thalassium ATCC 35110]
          Length = 403

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 54/313 (17%), Positives = 92/313 (29%), Gaps = 69/313 (22%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+   + T Q      L+  I   +         +F G  G+GKTT A+++A+ L
Sbjct: 7   ARKYRPQKFSDITAQEHVTRTLRNAIRTGRIAHGY----IFSGSRGVGKTTAARILAKGL 62

Query: 79  GV--------------------------------NFRSTSGPVIAKAGDLAALLTNL--- 103
                                             N             D+ AL  N+   
Sbjct: 63  NCEKILKDEAYRETVSEPCGECESCRDFDAGSSLNISEFDAASNNSVDDIRALRENVRYA 122

Query: 104 ---EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAAT 160
                  V  IDE H LS          +E+                    S    I AT
Sbjct: 123 PQKGRYKVYIIDEFHMLSNAAFNAFLKTLEE------------------PPSHAVFIFAT 164

Query: 161 TRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPR 220
           T +  +   +  R           ++  + + +       + +  ++   IA ++ G  R
Sbjct: 165 TELNKVPPTIASRCQKFNFKRISVLDIQERLAE-ICAAEAINIDVDSLTLIARKADGAMR 223

Query: 221 IAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLD-------LRYLTMIAR 273
            A  LL +V  F  ++           AALL    D+  F   D        + L +   
Sbjct: 224 DAQSLLDQVISFF-LSTENEKIEYTNVAALLGDIDDEHFFAVTDSIKEKNHAKVLELSRY 282

Query: 274 NFGGGPVGIETIS 286
            F  G   ++ ++
Sbjct: 283 IFDNGFDTLDFLA 295


>gi|115385577|ref|XP_001209335.1| cell division cycle protein 48 [Aspergillus terreus NIH2624]
 gi|114187782|gb|EAU29482.1| cell division cycle protein 48 [Aspergillus terreus NIH2624]
          Length = 821

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 48/258 (18%), Positives = 86/258 (33%), Gaps = 17/258 (6%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLED 105
           +    +L  GPPG GKT +A+ VA E G  F   +GP I          +L       E 
Sbjct: 254 KPPRGILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEK 313

Query: 106 RD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
               ++FIDEI  ++   E+             +V +  +        S   ++AAT R 
Sbjct: 314 NSPAIIFIDEIDSIAPKREK-----TNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRP 368

Query: 164 GLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRI 221
             +   L+   RF   + +   +      I+Q   K   L    +     A         
Sbjct: 369 NSIDPALRRFGRFDREVDIGIPDPTGRLEILQIHTKNMKLGEDVDLETIAAETHGYVGSD 428

Query: 222 AGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVG 281
              L        +    K    ++ +  +    +D +G    + RY   ++       V 
Sbjct: 429 LASLCSEAAM--QQIREKMDLIDLDEDTIEAEVLDSLGVTMENFRYALGVSNPSALREVA 486

Query: 282 IETISAGLSEPRDAIEDL 299
           +  +     E    +E++
Sbjct: 487 VVEVPNVRWEDIGGLEEV 504



 Score = 50.5 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 62/158 (39%), Gaps = 12/158 (7%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--V 108
           VLF GPPG GKT LA+ VA E   NF S  GP +          ++  +          V
Sbjct: 533 VLFYGPPGTGKTMLAKAVANECAANFISVKGPELLSMWFGESESNIRDIFDKARAAAPCV 592

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +F+DE+  ++      +  A      D +V +  +      +     +I AT R   L  
Sbjct: 593 VFLDELDSIAKSRGGSVGDA--GGASDRVVNQLLTEMDGMTSKKNVFVIGATNRPEQLDA 650

Query: 169 PLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVT 204
            L    R    + +   +    ++I++   + T +A  
Sbjct: 651 ALVRPGRLDTLVYVPLPDQASRESILKAQLRKTPVAGD 688


>gi|18313875|ref|NP_560542.1| AAA family ATPase, CDC48 subfamily protein [Pyrobaculum aerophilum
           str. IM2]
 gi|18161441|gb|AAL64724.1| AAA family ATPase, possible cell division control protein cdc48
           [Pyrobaculum aerophilum str. IM2]
          Length = 738

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 58/251 (23%), Positives = 92/251 (36%), Gaps = 30/251 (11%)

Query: 28  EEFTGQVEACSNLKVFIE--------AAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           ++  G       L+  +E          +   E    +L  GPPG+GKT  A+ VA E G
Sbjct: 465 DDIGGYDTIKQELREIVEWPMKYKHYFDELGVEPPKGILLFGPPGVGKTLFAKAVATESG 524

Query: 80  VNFRSTSGPVI--AKAGDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAMED 131
            NF +  GP +     G+    +  +  +       V+F DEI  ++      L      
Sbjct: 525 ANFIAVRGPELLSKWVGESEKAIREVFKKARMAAPCVIFFDEIDSIAPARGSRLGD---S 581

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
              D MV +  +       L    ++AAT R  +L   L    RF   I +   +++   
Sbjct: 582 GVTDRMVNQLLAEMDGIGTLKNVVVMAATNRPDILDPALLRPGRFDRVIYVPPPDLKARI 641

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSR--------GTPRIAGRLLRRVRDFAEVAHAKTI 241
            I +   K   LA  D    E+A R+            R A  L  R     +   AK +
Sbjct: 642 EIFKVHTKRVKLA-DDVNLEELAKRTEGYTGADIAALVREAAMLALRETIREKTVKAKPV 700

Query: 242 TREIADAALLR 252
           + +  + AL R
Sbjct: 701 SMKHFEEALKR 711



 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 49/117 (41%), Gaps = 17/117 (14%)

Query: 24  PR-TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVV 74
           PR T E+     +A   ++  +E      E   H        +L +GPPG GKT LA+ V
Sbjct: 172 PRVTWEDIGDLEDAKQKIRELVELPLRHPELFKHLGIEPPKGILLIGPPGTGKTLLAKAV 231

Query: 75  ARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEE 123
           A E    F + +GP I           L  +    +     ++FIDEI  ++   EE
Sbjct: 232 ANEANAYFVAINGPEIMSKYYGESEARLREIFEEAKKNAPAIIFIDEIDAIAPKREE 288


>gi|312075254|ref|XP_003140335.1| AAA ATPase [Loa loa]
 gi|307764496|gb|EFO23730.1| AAA ATPase [Loa loa]
          Length = 353

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 72/213 (33%), Gaps = 19/213 (8%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI-----AKAGDLAALLTNLEDR- 106
               VL  GPPG GKT LA+++AR     F +     +      ++  LA  + ++  + 
Sbjct: 121 PPKGVLLYGPPGCGKTLLAKIIARAANARFINLQVSSLCDKWYGESQKLADAVFSVAQKF 180

Query: 107 --DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164
              ++FIDEI           + A    +   M      A S         ++ AT R  
Sbjct: 181 QPTIIFIDEIDSFLRDRNTQDHEATAMMKAQFMCLWDGFASSDDA----IIVLGATNRPN 236

Query: 165 LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGR 224
            + + +  R      +    +E    I+    K+                +     ++G 
Sbjct: 237 DVDSAILRRMPARFYVPLPSLESRADIL----KVLLRDQPVMPEINFERIAEYATELSGS 292

Query: 225 LLRRVRDFA---EVAHAKTITREIADAALLRLA 254
            L+ V   A    V  A    +++ + A   + 
Sbjct: 293 DLKEVCRLAVLSRVKDAFIKGKDLNNEATRMIR 325


>gi|158336375|ref|YP_001517549.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris
           marina MBIC11017]
 gi|158306616|gb|ABW28233.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris
           marina MBIC11017]
          Length = 631

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 53/263 (20%), Positives = 94/263 (35%), Gaps = 27/263 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  E+ + L+  +E  K+        A+    VL VGPPG GKT +A+ VA E 
Sbjct: 168 TFDDVAGVEESKTELEEIVEFLKSPQRFTEIGAKIPKGVLLVGPPGTGKTLMAKAVAGEA 227

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVE--EILYPA 128
           GV F S SG           A  +  L    + +   ++FIDE+  +             
Sbjct: 228 GVPFFSISGSEFVELFVGTGAARVRDLFEQAKKKAPCIIFIDELDAIGKSRAGGNGFVGG 287

Query: 129 MEDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
            ++ +  L  ++ E     +         ++AAT R   L   L    RF   + ++  +
Sbjct: 288 NDEREQTLNQLLTEMDGFGAGDAT---VIVLAATNRPETLDPALLRPGRFDRQVLVDRPD 344

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +     I++  AK   L    +                  L+      A    +K +  +
Sbjct: 345 LTGRLAILEIYAKKVKLGENVDLKAMATRTPGFAGADLANLVNEAALLAARRGSKVVETQ 404

Query: 245 IADAALLRLAIDKMGFDQLDLRY 267
               A+ R+     G ++     
Sbjct: 405 DFAEAIERVVA---GLEKKSRVL 424


>gi|79522090|ref|NP_568490.2| LON1 (LON PROTEASE 1); ATP binding / ATP-dependent peptidase/
           serine-type peptidase [Arabidopsis thaliana]
          Length = 985

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 68/369 (18%), Positives = 124/369 (33%), Gaps = 66/369 (17%)

Query: 11  NVSQEDADISLLRPRTL--EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGK 67
           N S E+ D++  R +T+  E+  G  +    +  FI   + R  +   ++   GPPG+GK
Sbjct: 458 NYSNENFDVA--RAQTILDEDHYGLSDVKERILEFIAVGRLRGTSQGKIICLSGPPGVGK 515

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED----------------RDVLFI 111
           T++ + +AR L   F   S   +A   ++                           ++ I
Sbjct: 516 TSIGRSIARALNRKFFRFSVGGLADVAEIKGHRRTYVGAMPGKMVQCLKSVGTANPLVLI 575

Query: 112 DEIHRLSI--------IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
           DEI +L           + E+L P      LD           V I+LS+   +     +
Sbjct: 576 DEIDKLGRGHAGDPASALLELLDPEQNANFLD-------HYLDVTIDLSKVLFVCTANVI 628

Query: 164 GLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAG 223
            ++ NPL DR  +     +   E +       A+                +   +     
Sbjct: 629 DMIPNPLLDRMEVISIAGYITDEKVH-----IARDYLEKTARGDCGVKPEQVEVSDAALL 683

Query: 224 RLLRRVRDFAEVAH-AKTITREIADAALLRLAID------KMGFDQLDLRYLTMIARNFG 276
            L+      A V +  K I +     AL  +          +  D  +   +  +  +  
Sbjct: 684 SLIENYCREAGVRNLQKQIEKIYRKIALKLVREGAVPEEPAVASDPEEAEIVADVGESIE 743

Query: 277 GGPVGIETISAGL--SEPRDAIEDLIEPYMI---------------QQGFIQRTPRGRLL 319
              V   T+S+     E     +  IE  MI                +   ++TP G ++
Sbjct: 744 NHTVEENTVSSAEEPKEEAQTEKIAIETVMIDESNLADYVGKPVFHAEKLYEQTPVG-VV 802

Query: 320 MPIAWQHLG 328
           M +AW  +G
Sbjct: 803 MGLAWTSMG 811


>gi|313888954|ref|ZP_07822614.1| DNA polymerase III, subunit gamma and tau [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845127|gb|EFR32528.1| DNA polymerase III, subunit gamma and tau [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 577

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 94/249 (37%), Gaps = 27/249 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     R +T +E  GQ    ++LK      + +   + H  +F G  G GKT+ A++++
Sbjct: 4   ALYRKYRSKTFDELYGQEAVVASLKN-----QVKNNEISHAYIFQGTRGTGKTSAAKILS 58

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAME 130
           R +         P   +  +   +L      DV+ +D      +  +  + ++++YP   
Sbjct: 59  RAVNCLHPVDGNP-CNECENCKRILNE-SVLDVVEMDAASNNGVDDIRDLKDKVIYPPQA 116

Query: 131 DFQLDLMVGE------GPSARSVKINLSR---FTLIAATTRVGLLTNPLQDRFGIPIRLN 181
                 ++ E      G     +KI          I ATT +  +   +  R        
Sbjct: 117 LKYKVYIIDEVHMLSKGAFNALLKILEEPPRHLIFILATTEIEKIPATILSRSQ-KFNFK 175

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
              +ED+++ ++R  +L G +  +E    IA  + G  R A  +L    D     +   I
Sbjct: 176 RISVEDIESNLKRITELEGKSCDEEVFTLIAKTADGAMRDALSVL----DQLITKNKDHI 231

Query: 242 TREIADAAL 250
             E A   L
Sbjct: 232 RLEDAMEVL 240


>gi|195628076|gb|ACG35868.1| replication factor C subunit 3 [Zea mays]
          Length = 362

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 77/234 (32%), Gaps = 40/234 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP++L +     +    +             L H+L  GPPG GKT+    VAR
Sbjct: 40  PWVEKYRPQSLADVAAHRDIVDTIDRL-----TNENRLPHLLLYGPPGTGKTSTILAVAR 94

Query: 77  ------------ELGVNFRSTSGPVIAKAGDLAALLT-NLEDRD---VLFIDEIHRLSII 120
                       EL  +       V  +  D A   + +   R    ++ +DE   ++  
Sbjct: 95  KLYGSQYSNMILELNASDERGIDVVRQQIQDFAGARSLSFGARPSVKLVLLDEADAMTKD 154

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            +  L   +E +            RS +  L           V  +   LQ R     R 
Sbjct: 155 AQFALRRVIEKYT-----------RSTRFAL-------ICNHVNKIIPALQSRC-TRFRF 195

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
              +   ++  +Q   K  GL+V D     +   S G  R A  +L+     ++
Sbjct: 196 APLDGSHVRERLQHIIKSEGLSVDDGGLTALVRLSNGDMRKALNILQSTHMASQ 249


>gi|209523843|ref|ZP_03272396.1| ATP-dependent metalloprotease FtsH [Arthrospira maxima CS-328]
 gi|209495875|gb|EDZ96177.1| ATP-dependent metalloprotease FtsH [Arthrospira maxima CS-328]
          Length = 629

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 62/273 (22%), Positives = 100/273 (36%), Gaps = 23/273 (8%)

Query: 27  LEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVARELG 79
            ++  G  EA   L+  +   K         A     VL VGPPG GKT LA+ +A E G
Sbjct: 173 FDDVAGVEEAKEELQEVVTFLKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAG 232

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMED 131
           V F S SG           A  +  L    ++    ++FIDEI  +       +    ++
Sbjct: 233 VPFFSISGSEFVEMFVGVGASRVRDLFKKAKETAPCIVFIDEIDAVGRQRGAGIGGGNDE 292

Query: 132 FQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            +  L  ++ E               +IAAT R  +L + L    RF   + ++  +I+ 
Sbjct: 293 REQTLNQLLTEMDGFEGNTG----IIIIAATNRPDVLDSALLRPGRFDRQVIVDAPDIKG 348

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
             ++++  A+   LA               T      LL            + IT    D
Sbjct: 349 RLSVLEVHARNKKLADQVSLEAIARRTPGFTGADLANLLNEAAILTARRRKEAITMAEID 408

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV 280
            A+ R+     G   LD +   +IA +  G  +
Sbjct: 409 DAVDRVVAGMEGTPLLDGKTKRLIAYHEIGHAI 441


>gi|297616334|ref|YP_003701493.1| ATP-dependent metalloprotease FtsH [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297144171|gb|ADI00928.1| ATP-dependent metalloprotease FtsH [Syntrophothermus lipocalidus
           DSM 12680]
          Length = 600

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 58/246 (23%), Positives = 97/246 (39%), Gaps = 23/246 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  EA   L+  IE  K         A+    VL  GPPG GKT +A+ VA E 
Sbjct: 155 TFKDVAGADEAKEELQEVIEFLKNPQKFIQMGAKIPKGVLLYGPPGTGKTLMARAVAGEA 214

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG       V   A  +  L  N +     ++FIDEI  +       +    +
Sbjct: 215 GVPFFSISGSDFVEMFVGVGAARVRDLFENAKKNAPCIVFIDEIDAVGRQRGAGVGGGHD 274

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E     + +       ++A T R  +L   L    RF   I ++  +++
Sbjct: 275 EREQTLNQLLVEMDGFSTNEG----IIVMAGTNRPDILDPALLRPGRFDRHIVIDRPDVK 330

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++  A+   LA   + +         T      ++      +   + K IT E  
Sbjct: 331 GREAILKVHAEGKPLAPGVDMSVIAKRTPGFTGADLANVMNEAALLSARRNKKEITMEEL 390

Query: 247 DAALLR 252
           + A+ R
Sbjct: 391 EDAIER 396


>gi|253999384|ref|YP_003051447.1| DNA polymerase III subunits gamma and tau [Methylovorus sp. SIP3-4]
 gi|253986063|gb|ACT50920.1| DNA polymerase III, subunits gamma and tau [Methylovorus sp.
           SIP3-4]
          Length = 610

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 47/254 (18%), Positives = 78/254 (30%), Gaps = 55/254 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+  E   GQ      L   +E      + L H  LF G  G+GKTTLA+++A+ L   
Sbjct: 11  RPKLFEALVGQEHVVRALTNALE-----QQRLHHAYLFTGTRGVGKTTLARILAKSLNCE 65

Query: 82  ------------------------FRSTSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                             +   +  LL N +         V  I
Sbjct: 66  TGITAHPCGVCSACVDIDRGRFVDMLEVDAASNTQVDSMRELLDNAQYAPTVGRFKVYII 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      +   +E+                    +    I ATT    +   + 
Sbjct: 126 DEVHMLSRSAFNAMLKTLEE------------------PPAHVKFILATTDPQKMPVTVL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L       + + +Q       +     A   I+  + G+ R A  LL +   
Sbjct: 168 SRC-LQFNLRQMSTPAITSHLQEVLAKENIPSDSIALQLISRAANGSMRDALSLLDQAIA 226

Query: 232 FAEVAHAKTITREI 245
           +      ++  R +
Sbjct: 227 YGGNRVNESEVRAM 240


>gi|242058597|ref|XP_002458444.1| hypothetical protein SORBIDRAFT_03g033660 [Sorghum bicolor]
 gi|241930419|gb|EES03564.1| hypothetical protein SORBIDRAFT_03g033660 [Sorghum bicolor]
          Length = 1026

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 82/222 (36%), Gaps = 16/222 (7%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV--- 80
           P+T ++  GQ      L     A   R   L +V F GP G GKT+ A+V A+ L     
Sbjct: 354 PKTFKDVVGQSLVVQALS---NAILRRKIGLVYV-FYGPHGTGKTSCARVFAKALNCLSS 409

Query: 81  -NFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
            + R         A +L    + +E   V  ID    + ++   +L PA   +++ +   
Sbjct: 410 EHPRPCDSCTSCIAHNLGKSRSLMEIGPVGNIDMDGIVDVLDNVMLSPAPSHYRVFIFDD 469

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNP-------LQDRFGIPIRLNFYEIEDLKTIV 192
                      +S+    A    V +L +P       +  R          E + + T +
Sbjct: 470 CDTLPPDTWSAISKVVDRAPRRVVFILVSPNLELPHIILSRCQKFFFPKLRESDIVNT-L 528

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
           Q       L V  +A   IA RS G+ R A   L ++    +
Sbjct: 529 QWICTSESLDVDKDALKLIASRSDGSLRDAEMTLDQLSLLGQ 570


>gi|195430960|ref|XP_002063516.1| GK21952 [Drosophila willistoni]
 gi|194159601|gb|EDW74502.1| GK21952 [Drosophila willistoni]
          Length = 801

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 84/257 (32%), Gaps = 28/257 (10%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVAR 76
            T  +  G       L+  ++      +            VLF GPPG GKT LA+ +A 
Sbjct: 471 TTWTDIGGLENVKKELQELVQYPVEHPDKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIAN 530

Query: 77  ELGVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127
           E   NF S  GP +         A   D+     +     VLF DE+  ++      +  
Sbjct: 531 ECQANFISVKGPELLTMWFGESEANVRDIFDKARSAAP-CVLFFDELDSIAKARGGNVGD 589

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           A      D ++ +  +            +I AT R  ++   +    R    I +   + 
Sbjct: 590 A--GGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDD 647

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA------EVAHAK 239
           +  + I++   + + LA   +      +    +      + +R    A           +
Sbjct: 648 KSREAILKANLRKSPLAKEVDLTYIAKVTQGFSGADLTEICQRACKLAIRQAIEAEIRRE 707

Query: 240 TITREIADAALLRLAID 256
               E  ++A+     D
Sbjct: 708 KERTENQNSAMDMDEDD 724



 Score = 51.6 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 48/254 (18%), Positives = 84/254 (33%), Gaps = 31/254 (12%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARA--------EALDHVLFVGPPGLGKTTLAQVVARELG 79
           ++  G  +  + +K  +E              +    +L  GPPG GKT +A+ VA E G
Sbjct: 201 DDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVANETG 260

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMED 131
             F   +GP I          +L       E     ++FIDEI  ++   ++        
Sbjct: 261 AFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAIIFIDEIDAIAPKRDKTHGEVERR 320

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ-----DRFGIPIRLNFYEIE 186
               L+       +S     S   ++AAT R   +   L+     DR       +     
Sbjct: 321 IVSQLLTLMDGMKKS-----SHLIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRL 375

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGT-----PRIAGRLLRRVRDFAEVAHAKTI 241
           ++  I  +  KL      ++ A E                A + +R   D  ++   K  
Sbjct: 376 EVLRIHTKNMKLHEDVDLEQIAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDKID 435

Query: 242 TREIADAALLRLAI 255
              +A  A+     
Sbjct: 436 AEVLASLAVTMENF 449


>gi|329849471|ref|ZP_08264317.1| DNA polymerase III, subunits gamma and tau [Asticcacaulis
           biprosthecum C19]
 gi|328841382|gb|EGF90952.1| DNA polymerase III, subunits gamma and tau [Asticcacaulis
           biprosthecum C19]
          Length = 602

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 63/311 (20%), Positives = 105/311 (33%), Gaps = 44/311 (14%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RPRT E+  GQ      L     A +         +  G  G+GKTT A+++AR L
Sbjct: 46  ARKYRPRTFEDLIGQEAMVRTLTNAFSAGRIAHA----FMLTGVRGVGKTTTARLLARAL 101

Query: 79  GVNFRSTSGPVIAK--AGDLA------ALLTNLEDRDVLFIDEIHRLSIIVEEIL----- 125
                +          + DL         + +    DVL +D   R  +     L     
Sbjct: 102 NYESDTVQSSGGRGGPSVDLTTMGIHCQAIIDGRHIDVLELDAASRTGVDAMRDLLESVR 161

Query: 126 YPAMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGI 176
           Y  +E      ++ E             ++++        I ATT +  +   +  R   
Sbjct: 162 YAPVEARYKVYVIDEVHMLSTGAFNALLKTLEEPPPHAKFIFATTEIRKVPVTILSRCQ- 220

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
              L   E E L   +++   L G+ +  +A   IA  + G+ R +  LL    D A V 
Sbjct: 221 RFDLRRVEPETLTPHLEKICGLEGVRIDADAVALIARAAEGSVRDSLSLL----DQALVQ 276

Query: 237 HAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGP-----VGIETISAGLSE 291
                  E  +     +  D +G    D      +  N   G      +G  T+    ++
Sbjct: 277 G------EAGEIVGAEVVRDMLGL--ADRSATLALFENIISGQMSEALLGFRTLYGYGAD 328

Query: 292 PRDAIEDLIEP 302
           P   + DL+E 
Sbjct: 329 PTQIMGDLLEY 339


>gi|256053212|ref|XP_002570095.1| replication factor C / DNA polymerase III gamma-tau subunit
           [Schistosoma mansoni]
 gi|227287466|emb|CAY17767.1| replication factor C / DNA polymerase III gamma-tau subunit,
           putative [Schistosoma mansoni]
          Length = 362

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 49/237 (20%), Positives = 83/237 (35%), Gaps = 48/237 (20%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+T+ E   Q E  S L+  IE +      L ++LF GPPG GKT+L   +AR
Sbjct: 26  PWVEKYRPKTVGEVAYQTEVVSVLQRCIEGSD-----LPNLLFYGPPGTGKTSLILALAR 80

Query: 77  ------------ELGVNFRSTSGPVIAKAGDLAAL------------LTNLEDRDVLFID 112
                       EL  +       +  K    A +             TN+    ++ +D
Sbjct: 81  QLFGPLYSERVLELNASDERGISVIREKVKAFAHIAVSSSTNSSGSSSTNIPPYKLIILD 140

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E   ++   +  L   ME              R+ +  L           V  +  P+  
Sbjct: 141 EADSMTAPAQAALRRTME-----------TEMRTTRFCL-------TCNYVTRIIEPITS 182

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           R     R    + E  ++ ++  A    L++T+E    +     G  R    +L+ V
Sbjct: 183 RCA-KFRFRPLDNEIARSRLRHIADAENLSITNETLDHLLSLCHGDLRQGITMLQCV 238


>gi|254479639|ref|ZP_05092942.1| ATP-dependent metallopeptidase HflB subfamily protein
           [Carboxydibrachium pacificum DSM 12653]
 gi|214034424|gb|EEB75195.1| ATP-dependent metallopeptidase HflB subfamily protein
           [Carboxydibrachium pacificum DSM 12653]
          Length = 608

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 62/246 (25%), Positives = 90/246 (36%), Gaps = 23/246 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAK-------ARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  E    L+  +E  K         A     VL VGPPG GKT LA+ VA E 
Sbjct: 156 TFNDVAGADEEKEELQEIVEFLKYPKKFIELGARIPKGVLLVGPPGTGKTLLARAVAGEA 215

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG       V   A  +  L    +     ++FIDEI  +       L    +
Sbjct: 216 GVPFFSISGSDFVEMFVGVGAARVRDLFEQAKKNAPCIVFIDEIDAVGRQRGAGLGGGHD 275

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E       +       +IAAT R  +L   L    RF   I +N  +I+
Sbjct: 276 EREQTLNQLLVEMDGFSVNEG----IIVIAATNRPDILDPALLRPGRFDRHIVVNIPDIK 331

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++  A+   LA               T      ++      A     K IT    
Sbjct: 332 GREEILKVHARNKPLAPDVSLQVIARRTPGFTGADLENVMNEAALLAARKGLKQITMAEL 391

Query: 247 DAALLR 252
           + A+ R
Sbjct: 392 EEAITR 397


>gi|147809607|emb|CAN73350.1| hypothetical protein VITISV_000418 [Vitis vinifera]
          Length = 694

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 58/274 (21%), Positives = 95/274 (34%), Gaps = 23/274 (8%)

Query: 26  TLEEFTG-----QV--EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G     Q   E    LK         A     VL VGPPG GKT LA+ +A E 
Sbjct: 230 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEA 289

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG           A  +  L    ++    ++F+DEI  +       +    +
Sbjct: 290 GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGND 349

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E               +IAAT R  +L + L    RF   + ++  +I 
Sbjct: 350 EREQTLNQLLTEMDGFEGNTG----IIVIAATNRADILDSALLRPGRFDRQVTVDVPDIR 405

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
               I++  A                     +      LL      A       IT +  
Sbjct: 406 GRTEILKVHAGNKKFDGDVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKTAITSKEI 465

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV 280
           D ++ R+     G    D +  +++A +  G  +
Sbjct: 466 DDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAI 499


>gi|298708657|emb|CBJ26144.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 966

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 55/228 (24%), Positives = 83/228 (36%), Gaps = 27/228 (11%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARELG 79
           ++  G  E    ++  IE      E   H        +L  GPPG GKT LA  +A EL 
Sbjct: 264 DDLGGISEILQEVRELIEYPLVHPEVYAHLGIEPPRGILLHGPPGCGKTLLANAIAGELD 323

Query: 80  VNFRSTSGPVI---------AKAGDL-AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           V F   S P I          K  +L  A + N     ++F+DE+  ++   E      M
Sbjct: 324 VAFLRISAPEIVSGMSGESEQKVRELFRAAIENAPC--IVFMDEVDAITPKRETSS-RGM 380

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
           E   +  ++    S            +I AT R   L + L+   RF   I L   ++  
Sbjct: 381 EKRIVAQLLTCMDSLTIENTGGKPVVVIGATNRPNDLDSALRRAGRFDREICLGVPDLAA 440

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
              I++  A    LA       +    ++ TP   G  L  +   A V
Sbjct: 441 RARILEVMASKMTLAGD----VDFQQIAKKTPGFVGADLSSLTKEAAV 484



 Score = 47.0 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 8/73 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--V 108
           VL  GPPG GKT LA+ +A E G NF S  GP +           +  +          +
Sbjct: 696 VLLYGPPGCGKTLLAKAIANESGANFISVKGPELLDKYVGESEKSVRQVFQRARASSPCI 755

Query: 109 LFIDEIHRLSIIV 121
           +F DE+  L    
Sbjct: 756 IFFDELDALCPKR 768


>gi|229816762|ref|ZP_04447044.1| hypothetical protein BIFANG_02009 [Bifidobacterium angulatum DSM
           20098]
 gi|229785778|gb|EEP21892.1| hypothetical protein BIFANG_02009 [Bifidobacterium angulatum DSM
           20098]
          Length = 906

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 57/282 (20%), Positives = 91/282 (32%), Gaps = 28/282 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     RP T E   GQ +    L   ++  K     L H  LF GP G GKT+ A+++A
Sbjct: 4   ALYRRYRPDTFEGVIGQEQVTVPLMRALDEGK-----LTHAYLFSGPRGCGKTSSARILA 58

Query: 76  RELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------P 127
           R +      TS P        DLA         DV+ ID      +     L       P
Sbjct: 59  RCVNCAKGPTSHPCGECESCKDLA--TGGPGSIDVVEIDAASHNGVDDARELRERAGFAP 116

Query: 128 AMEDFQLDLMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR---FGI 176
           A + +++ ++         G     + V+        I ATT    +   ++ R   +  
Sbjct: 117 ARDRYKIFILDEAHMVTPQGFNALLKIVEEPPEHVMFIFATTEPDKVIGTIRSRTHHYPF 176

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
            +         L+ I  +        V   A        R T  +  +L+    D     
Sbjct: 177 RLVPQEIMGPYLEQICDKEGIKPEPGVLKLAMRAGGGSMRDTLSVLDQLMIGSVDGVITH 236

Query: 237 HAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
            A           L+  A+D +  D        ++ +   GG
Sbjct: 237 DASVALLGFTPETLIGQAVDAV-IDGNGEALYDVVQKVVVGG 277


>gi|242012194|ref|XP_002426820.1| ATP-dependent metalloprotease, putative [Pediculus humanus
           corporis]
 gi|212511027|gb|EEB14082.1| ATP-dependent metalloprotease, putative [Pediculus humanus
           corporis]
          Length = 559

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 52/245 (21%), Positives = 83/245 (33%), Gaps = 24/245 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T E+  G  EA   LK  +E  K          +    VL VGPPG GKT LA+ VA E 
Sbjct: 107 TFEDVKGVDEAKQELKEVVEFLKNPNKFSALGGKLPKGVLLVGPPGTGKTLLARAVAGEA 166

Query: 79  GVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
            V F   +GP            +  DL  +        V+FIDEI  +       +    
Sbjct: 167 RVPFFHAAGPEFDEILVGQGARRVRDLFKVAKETAP-CVIFIDEIDSVGSKRTNSVLHPY 225

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            +  ++ ++ E       +       ++ AT R   L   L    RF + + +   +   
Sbjct: 226 ANQTINQLLSEMDGFHQNEG----VIVLGATNRREDLDKALLRPGRFDVEVTVPTPDYHG 281

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            K I +           +               I   ++ +    A V  A+ +T    +
Sbjct: 282 RKQIFELYLGKILCKEVNVDLLARGTVGFTGADIEN-MVNQAALKAAVDGAECVTMTYLE 340

Query: 248 AALLR 252
            A  +
Sbjct: 341 NAKDK 345


>gi|328873282|gb|EGG21649.1| AAA ATPase domain-containing protein [Dictyostelium fasciculatum]
          Length = 566

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 50/239 (20%), Positives = 80/239 (33%), Gaps = 24/239 (10%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAKARAEALD----------HVLFVGPPGLGKTTLAQV 73
           P T ++  G  +     +  IEA        D           +L  GPPG GKT +A+ 
Sbjct: 291 PVTWDDVVGLDKVK---QSLIEAVILPGLRPDVFVGLRAPPKGLLLFGPPGNGKTMIAKA 347

Query: 74  VARELGVNFRSTSGPVI------AKAGDLAAL--LTNLEDRDVLFIDEIHRLSIIVEEIL 125
           VA E    F S S   +           + AL  + +     ++FIDEI  L        
Sbjct: 348 VAFESKATFFSISASSLTSKYVGEGEKLVRALFGVASYYQPSIIFIDEIDSLLTERSSEE 407

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             A    + +++V       S      R  ++ AT R   L      R    I +   E+
Sbjct: 408 SEATRRLKTEILVQFDGVKTSGS---ERVLVMGATNRPEELDEAALRRLVKRIYVGLPEL 464

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           E  K I+    +    ++T      +A  S G        L +   +  +       R+
Sbjct: 465 ETRKQIISHLLRDQKHSITASQLTTLAKASDGYSAFDLSALCKDAAYEPIRELGMEIRD 523


>gi|317133210|ref|YP_004092524.1| ATP-dependent metalloprotease FtsH [Ethanoligenens harbinense
           YUAN-3]
 gi|315471189|gb|ADU27793.1| ATP-dependent metalloprotease FtsH [Ethanoligenens harbinense
           YUAN-3]
          Length = 622

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 60/246 (24%), Positives = 88/246 (35%), Gaps = 27/246 (10%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKARAE-------ALDHVLFVGPPGLGKTTLAQVVARE 77
            T ++  G  E    L+  +E  K   +           VL VGPPG GKT LA+ VA E
Sbjct: 164 TTFDDVAGADEEKEELREIVEFLKNPHKFNELGARIPKGVLLVGPPGTGKTLLAKAVAGE 223

Query: 78  LGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
            GV F S SG       V   A  +  L    +     ++FIDEI  +       L    
Sbjct: 224 AGVPFFSISGSDFVEMFVGVGASRVRDLFDQAKKSSPCIIFIDEIDAVGRHRGAGLGGGH 283

Query: 130 EDFQLD----LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183
           ++ +      L+  +G  A    I      +IAAT R  +L   L    RF   + +   
Sbjct: 284 DEREQTLNQLLVEMDGFGANEGVI------IIAATNRPDILDPALLRPGRFDRQVVVGVP 337

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           +I+  + I++  A+   LA   +           T      LL      A       I  
Sbjct: 338 DIKGREEILKVHARGKPLAPDVDLKEISKTTVGFTGADLENLLNEAALIAARKSRHVIMM 397

Query: 244 EIADAA 249
              + A
Sbjct: 398 TDIEEA 403


>gi|225446693|ref|XP_002282107.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 694

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 58/274 (21%), Positives = 95/274 (34%), Gaps = 23/274 (8%)

Query: 26  TLEEFTG-----QV--EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G     Q   E    LK         A     VL VGPPG GKT LA+ +A E 
Sbjct: 230 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEA 289

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG           A  +  L    ++    ++F+DEI  +       +    +
Sbjct: 290 GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGND 349

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E               +IAAT R  +L + L    RF   + ++  +I 
Sbjct: 350 EREQTLNQLLTEMDGFEGNTG----IIVIAATNRADILDSALLRPGRFDRQVTVDVPDIR 405

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
               I++  A                     +      LL      A       IT +  
Sbjct: 406 GRTEILKVHAGNKKFDGDVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKTAITSKEI 465

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV 280
           D ++ R+     G    D +  +++A +  G  +
Sbjct: 466 DDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAI 499


>gi|307153545|ref|YP_003888929.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7822]
 gi|306983773|gb|ADN15654.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7822]
          Length = 624

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 55/259 (21%), Positives = 87/259 (33%), Gaps = 20/259 (7%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T E+  G  EA + L   +E  K         A     VL VGPPG GKT LA+ VA E 
Sbjct: 165 TFEDVAGVEEAKTELAEIVEFLKNPQRYKAIGARIPRGVLLVGPPGTGKTLLAKAVAGEA 224

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG         A A  +  L    + +   ++FIDE+  +        +    
Sbjct: 225 KVPFFSISGSEFVELFVGAGAARVRDLFEQAKKKAPCIIFIDELDAIGKSRASNGFVGGN 284

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
           D +   +              +   ++AAT R   L   L    RF   + ++  ++   
Sbjct: 285 DEREQTLNQLLTELDGFSAGDATVIVLAATNRPETLDPALLRPGRFDRQVLVDRPDLGGR 344

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             I++  A+   L                       L+      A      T+ +E    
Sbjct: 345 LKILEIYAQKVKLDKDVNLKEIATRTPGFAGADLANLVNEAALLAARNQRNTVAQEDFRE 404

Query: 249 ALLRLAIDKMGFDQLDLRY 267
           A+ R+     G ++     
Sbjct: 405 AIERIIA---GLEKKSRVL 420


>gi|161611258|ref|YP_296320.2| DNA polymerase III subunits gamma and tau [Ralstonia eutropha
           JMP134]
          Length = 730

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 56/296 (18%), Positives = 105/296 (35%), Gaps = 35/296 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPR      GQ      L   +E      + L H  LF G  G+GKTTL++++A+ L   
Sbjct: 11  RPRDFTTLVGQEHVVRALTHALE-----QQRLHHAYLFTGTRGVGKTTLSRILAKALNCT 65

Query: 82  FRSTSGPVIAKA-GDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAMEDFQ 133
               +G + A+  G   A       R V +I+        +  ++ ++++ +Y       
Sbjct: 66  GADGNGGITAQPCGQCKACTEIDSGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRF 125

Query: 134 LDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
              M+ E             ++++        I ATT    +   +  R  +   L    
Sbjct: 126 KVYMIDEVHMLTNHAFNAMLKTLEEPPGHVKFILATTDPQKIPVTVLSRC-LQFNLKQMP 184

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
              + + +       G+     A   +A  + G+ R A  L     D A    A  ++ E
Sbjct: 185 PAQIVSHLDNILGQEGIGHDGNALRLLAQAAHGSMRDALSL----TDQAIAYSAGEVSEE 240

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGI-ETISAGLSEPRDAIEDL 299
                L  +    +      ++ L  +A   G   +GI + ++        A++DL
Sbjct: 241 AVRGMLGAIDQGYL------VQLLDALAAEDGAALIGIADAMADRSLSFAGALQDL 290


>gi|20808757|ref|NP_623928.1| ATP-dependent Zn protease [Thermoanaerobacter tengcongensis MB4]
 gi|20517401|gb|AAM25532.1| ATP-dependent Zn proteases [Thermoanaerobacter tengcongensis MB4]
          Length = 611

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 62/246 (25%), Positives = 90/246 (36%), Gaps = 23/246 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAK-------ARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  E    L+  +E  K         A     VL VGPPG GKT LA+ VA E 
Sbjct: 159 TFNDVAGADEEKEELQEIVEFLKYPKKFIELGARIPKGVLLVGPPGTGKTLLARAVAGEA 218

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG       V   A  +  L    +     ++FIDEI  +       L    +
Sbjct: 219 GVPFFSISGSDFVEMFVGVGAARVRDLFEQAKKNAPCIVFIDEIDAVGRQRGAGLGGGHD 278

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E       +       +IAAT R  +L   L    RF   I +N  +I+
Sbjct: 279 EREQTLNQLLVEMDGFSVNEG----IIVIAATNRPDILDPALLRPGRFDRHIVVNIPDIK 334

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++  A+   LA               T      ++      A     K IT    
Sbjct: 335 GREEILKVHARNKPLAPDVSLQVIARRTPGFTGADLENVMNEAALLAARKGLKQITMAEL 394

Query: 247 DAALLR 252
           + A+ R
Sbjct: 395 EEAITR 400


>gi|67521818|ref|XP_658970.1| hypothetical protein AN1366.2 [Aspergillus nidulans FGSC A4]
 gi|40746393|gb|EAA65549.1| hypothetical protein AN1366.2 [Aspergillus nidulans FGSC A4]
          Length = 628

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 57/285 (20%), Positives = 91/285 (31%), Gaps = 23/285 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
           +L +  G  +    L   +     R +            VL  GPPG GKT +A   A E
Sbjct: 62  SLADLGGLDDVVQQLGDLVILPMTRPQVYLASNVQPPRGVLLHGPPGCGKTMIANAFAAE 121

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
           LGV F S S P I           L       +     ++FIDEI  ++   E       
Sbjct: 122 LGVPFISISAPSIVSGMSGESEKALREHFEEAKRLAPCLIFIDEIDAITPKRENSQREME 181

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
           +     L+      A   K +     ++AAT R   L   L+   RF   I +       
Sbjct: 182 KRIVAQLLTCMDDLA-LEKTDGKPVIVLAATNRPDSLDAALRRGGRFDKEINMTVPSEPV 240

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            + I+ R        V D     +A R+ G        L        +     + +  + 
Sbjct: 241 REQIL-RALTRKMRLVDDLDFKTLAKRTPGFVGADLNDLVSTAGSTAIKRYLDLLKSNSG 299

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEP 292
             +     D +      ++ L  +  +    P+G E     +S  
Sbjct: 300 EEMDIEGQDDL---SPSVKELRRLITHAKETPIGSEAEVVLVSND 341



 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 48/207 (23%), Positives = 75/207 (36%), Gaps = 15/207 (7%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD--- 107
           A   VL  GPPG GKT LA+ VA E   NF S  GP +     G+    +  +  R    
Sbjct: 401 APTGVLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESERAVRQVFVRARSS 460

Query: 108 ---VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164
              V+F DE+  L    ++ L  A       L+        S +       +IAAT R  
Sbjct: 461 IPCVIFFDELDALVPRRDDTLSEASARVVNTLLTELDGLGSSRQG----IYVIAATNRPD 516

Query: 165 LLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
           ++   +    R    + +N     +   I+Q   +   +   ++           +    
Sbjct: 517 IIDPAMLRPGRLETLLFVNLPSPLERVEILQTLVRRLPIEFNEDLRRLAEECEGFSGADL 576

Query: 223 GRLLRRVRDFAEVAHAKTITREIADAA 249
             LLRR   +  +    TI  +   AA
Sbjct: 577 TSLLRRA-GYNAIKRRDTIKFDDFVAA 602


>gi|328788555|ref|XP_393080.4| PREDICTED: spastin [Apis mellifera]
          Length = 712

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/200 (22%), Positives = 73/200 (36%), Gaps = 18/200 (9%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHV-------LFVGPPGLGKTTLAQVVARELGV 80
           E+  GQ  A   L+  +     R E    +       L  GPPG GKT LA+ VA +   
Sbjct: 438 EDIAGQETAKQALQEMVILPSLRPELFTGLRTPARGLLLFGPPGNGKTLLARAVATQCNA 497

Query: 81  NFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAMEDF 132
            F S S   +           + AL +   +    V+FIDE+  L     +  + A    
Sbjct: 498 TFFSISAASLTSKYVGEGEKLVRALFSIARELQPSVIFIDEVDSLLSERRDNEHEASRRL 557

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           + + +V              R  ++AAT R   L      RF   + +   ++     ++
Sbjct: 558 KTEFLVEFDG---LPCNPEERVLVMAATNRPQELDEAALRRFTKRVYVTLPDLRTRIMLL 614

Query: 193 QRGAKLTGLAVTDEAACEIA 212
           +R        +T E   E+A
Sbjct: 615 KRLLAKHNDPLTSEELNEMA 634


>gi|326795606|ref|YP_004313426.1| DNA polymerase III subunits gamma and tau [Marinomonas mediterranea
           MMB-1]
 gi|326546370|gb|ADZ91590.1| DNA polymerase III, subunits gamma and tau [Marinomonas
           mediterranea MMB-1]
          Length = 816

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/177 (22%), Positives = 58/177 (32%), Gaps = 39/177 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T  E  GQ      L+  + A   R + L H  LF G  G+GKTT+A++ A+ L   
Sbjct: 11  RPQTFLEMAGQDHV---LQALVNA--LRQQRLHHAYLFTGTRGVGKTTIARIFAKSLNCE 65

Query: 82  FRSTS-------------------------GPVIAKAGDLAALLTNLE------DRDVLF 110
               S                              K  D   LL N++         V  
Sbjct: 66  TNGISPEPCGTCSSCTEIAEGRFVDLIEVDAASRTKVEDTRELLENVQYAPTRGRFKVYL 125

Query: 111 IDEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
           IDE+H LS      L   +E+    +  ++      +     LSR            
Sbjct: 126 IDEVHMLSTHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFNLKNMSAQ 182


>gi|297570854|ref|YP_003696628.1| ATP-dependent metalloprotease FtsH [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296931201|gb|ADH92009.1| ATP-dependent metalloprotease FtsH [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 747

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 67/273 (24%), Positives = 101/273 (36%), Gaps = 34/273 (12%)

Query: 2   MDREGLLSRNVSQEDADISLLRPR-TLEEFTGQVEACSNLKVFIEAA-------KARAEA 53
           M   G + ++   ED      RP  T  +  G  EA   L+   E         K  A+ 
Sbjct: 224 MGSFGRVKKDGLDED------RPSVTFTDVAGADEAVEELQEIEEFIDHPDKFRKMGAKI 277

Query: 54  LDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR- 106
              VL  GPPG GKT LA+ VA E GV F   S            A  +  L T  +   
Sbjct: 278 PRGVLLYGPPGTGKTLLAKAVAGEAGVPFFHISASEFVEMFVGVGASRVRDLFTKAKKLA 337

Query: 107 -DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
             ++F+DEI  +     + +    ++ +  L   +           +   +IAAT R  +
Sbjct: 338 PAIIFVDEIDAVGRNRGQGMGGGNDEREQTL--NQLLVEMDGFDERANVIVIAATNRPDV 395

Query: 166 LTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAG 223
           L   L    RF   I ++  +++    I++  A+   LA       E+   +R TP  AG
Sbjct: 396 LDPALLRPGRFDRQIAVDAPDLKGRAAILKVHAEGKPLAE----GIELESIARRTPGFAG 451

Query: 224 ----RLLRRVRDFAEVAHAKTITREIADAALLR 252
                LL      A       I  +  D A+ R
Sbjct: 452 AELANLLNEAALLATRRGHDKIGEDDLDEAIDR 484


>gi|229827992|ref|ZP_04454061.1| hypothetical protein GCWU000342_00041 [Shuttleworthia satelles DSM
           14600]
 gi|229792586|gb|EEP28700.1| hypothetical protein GCWU000342_00041 [Shuttleworthia satelles DSM
           14600]
          Length = 672

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 52/245 (21%), Positives = 91/245 (37%), Gaps = 23/245 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAK-------ARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
             ++  G+ EA  NL+  +E            A+    +L VGPPG GKT LA+ VA E 
Sbjct: 167 RFDDVAGEEEAKENLQEIVEYLHDPHKYTAIGAKMPKGILLVGPPGTGKTMLAKAVAGEA 226

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG           A  +  L    +++   ++FIDEI  +    E   +   +
Sbjct: 227 NVPFFSMSGSEFVEMFVGMGASKVRDLFRQAKEKAPCIVFIDEIDAIGKKREGGNFGGND 286

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E               ++AAT R   L   L    RF   + +   +++
Sbjct: 287 EREQTLNQLLTEMDGFEDNLG----VVILAATNRPEALDPALTRPGRFDRRVPVELPDLQ 342

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
               I++  AK   +    +      M +  +      ++      A  A     T E  
Sbjct: 343 GRIDILKVHAKKVKIGDNVDFDKVARMAAGASGAELANMVNEAALRAVRAGRSFATEEDL 402

Query: 247 DAALL 251
           + ++ 
Sbjct: 403 EESIE 407


>gi|256833317|ref|YP_003162044.1| ATP-dependent metalloprotease FtsH [Jonesia denitrificans DSM
           20603]
 gi|256686848|gb|ACV09741.1| ATP-dependent metalloprotease FtsH [Jonesia denitrificans DSM
           20603]
          Length = 677

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 62/248 (25%), Positives = 104/248 (41%), Gaps = 31/248 (12%)

Query: 26  TLEEFTGQVEACSNLK----VFIEAAKARA---EALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  EA   L+       E AK +A   +    VL  GPPG GKT LA+ VA E 
Sbjct: 165 TFSDVAGADEAVEELREIKEFLSEPAKFQAVGAKIPKGVLLYGPPGTGKTLLARAVAGEA 224

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG       V   A  +  L    ++    ++F+DEI  +       +    +
Sbjct: 225 GVPFFSISGSDFVEMFVGVGASRVRDLFQQAKENSPAIIFVDEIDAVGRHRGAGMGGGHD 284

Query: 131 DFQLD----LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
           + +      L+  +G   ++  I       IAAT R  +L   L    RF   I ++  +
Sbjct: 285 EREQTLNQLLVEMDGFDVKTNVIL------IAATNRPDILDPALLRPGRFDRQISVDPPD 338

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           ++  + I++  A+   +      + ++   ++ TP  +G  L  V + A +  A++  + 
Sbjct: 339 LKGREAILKVHAQGKPVVD----SVDLHSVAKRTPGFSGADLANVLNEAALLTARSGAQL 394

Query: 245 IADAALLR 252
           I D AL  
Sbjct: 395 IDDRALDE 402


>gi|242769231|ref|XP_002341728.1| intermembrane space AAA protease IAP-1 [Talaromyces stipitatus ATCC
           10500]
 gi|218724924|gb|EED24341.1| intermembrane space AAA protease IAP-1 [Talaromyces stipitatus ATCC
           10500]
          Length = 807

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 55/231 (23%), Positives = 89/231 (38%), Gaps = 26/231 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G  EA   L+  +E        +    +    VL VGPPG GKT LA+ VA E 
Sbjct: 338 RFSDVHGCDEAKDELQELVEFLLNPDRFSTLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 397

Query: 79  GVNFRSTSGPVIA------KAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAME 130
           GV F   SG           A  +  L      +   ++FIDE+  +     E    A  
Sbjct: 398 GVPFFYMSGSEFDEVYVGVGAKRVRDLFAQARAKAPAIIFIDELDAIGAKRNER-DAAYV 456

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
              L+ ++ E           S   ++AAT    LL   L    RF   + +   ++   
Sbjct: 457 KQTLNQLLTELDGFSQT----SGVIILAATNYPQLLDKALTRPGRFDRRVVVGLPDVRGR 512

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
             I++   K   ++       ++A+ +RGTP  +G  L  + + A V  ++
Sbjct: 513 MDILKHHMKGVQVSTD----VDVAVIARGTPGFSGADLENLVNQAAVHASR 559


>gi|299534808|ref|ZP_07048137.1| stage V sporulation protein K [Lysinibacillus fusiformis ZC1]
 gi|298729653|gb|EFI70199.1| stage V sporulation protein K [Lysinibacillus fusiformis ZC1]
          Length = 562

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 56/286 (19%), Positives = 105/286 (36%), Gaps = 48/286 (16%)

Query: 2   MDREGL-LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH---- 56
           ++ E L ++  V QE A +     + L+   G   A   L   I   K ++  +DH    
Sbjct: 271 INDERLRITPEVEQEIAKLQ----KQLDSLVGLPNAKKELHNLINFIKIQSLRVDHGLTS 326

Query: 57  ------VLFVGPPGLGKTTLAQVVAR--------ELGVNFRSTSGPVIAK-----AGDLA 97
                 ++F G PG GKTT+A+++ +          G    +    ++A      A  + 
Sbjct: 327 FPITYHLVFSGNPGTGKTTVARIIGQIYKHLGVLSSGHFVETDRAGLVAGYVGQTALKVQ 386

Query: 98  ALLTNLEDRDVLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKI 149
            ++   +   VLFIDE + L    +        + L   MED + DL++        ++ 
Sbjct: 387 EVVNKAKGG-VLFIDEAYSLMNDKQDAFGKEAIDSLLKVMEDLRDDLVIIVAGYTELIEE 445

Query: 150 NL-------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI-EDLKTIVQRGAKLTGL 201
            L       SRF            T+ L D F +  + N Y+  E     ++   +   +
Sbjct: 446 FLQSNPGFKSRFNHFVQFDNFS--TDELYDIFAMLCQTNDYQFGEAFAQHMKTQLRHMPI 503

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
                 +    +R     ++      R+   A ++  + +T E  D
Sbjct: 504 ETIPNFSNGRYIR-NLFEKLVTIQSNRLIQQAIISREELMTFEEQD 548


>gi|303314983|ref|XP_003067499.1| ATPase, AAA family protein [Coccidioides posadasii C735 delta
           SOWgp]
 gi|240107169|gb|EER25354.1| ATPase, AAA family protein [Coccidioides posadasii C735 delta
           SOWgp]
          Length = 958

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 68/334 (20%), Positives = 118/334 (35%), Gaps = 47/334 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEA----------LDHVLFVGPPGLG 66
            D   +R  + ++     E    LK     +  R +A          +  +L  GPPG G
Sbjct: 640 VDAESIR-TSFKDVHVPQETIEALKTLTSLSLVRPDAFTYGVLATDKIPGLLLYGPPGTG 698

Query: 67  KTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLS 118
           KT LA+ VARE G      SG  +          ++ A+ T  +     V+FIDE   + 
Sbjct: 699 KTLLAKAVARESGATVLEVSGSEVYDMYVGEGEKNVKAIFTLAKKLSPCVVFIDEADAIF 758

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
                          ++  + E               ++ AT R   L + +  R    +
Sbjct: 759 CSRTGASNRTSHRELINQFLREWDGMSETSA-----FIMVATNRPFDLDDAVLRRLPRRL 813

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
            ++    +D   I++   K   +      + ++   +R TP  +G  L+ +   A +A  
Sbjct: 814 LVDLPTEKDRHEILKIHLKDEAVDK----SVDLTDLARRTPFYSGSDLKNMSVAAALA-- 867

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
               RE  DAA+     +       + R L     +F      +E ISA +SE   ++  
Sbjct: 868 --CVREEYDAAIRHKGDEPYK--YPERRILKS--HHFDRA---MEEISASISEDMSSL-T 917

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
            I  +   + +  R  +GR      W   G   P
Sbjct: 918 AIRKF--DEKYGDR--KGRRKKSSGW---GFTPP 944


>gi|124516357|gb|EAY57865.1| DNA polymerase III subunit gamma/tau [Leptospirillum rubarum]
          Length = 540

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 76/224 (33%), Gaps = 25/224 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+   +  GQ          +       +    +LF G  G+GKTT+A+++A+ +    
Sbjct: 12  RPQLFSDLVGQEFVV----RALTGTLGSGKLPQALLFSGDRGVGKTTVARILAKAINCEK 67

Query: 83  RSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEIL-----YPAMEDFQLD 135
               GP +    +  + L        DVL ID      +     L     Y         
Sbjct: 68  ----GPTVDPCQECDSCLEITRGTSPDVLEIDGASHTGVEDIRSLREGIRYLPFRSRSRV 123

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             ++++        I ATT    + + +  R     R     + 
Sbjct: 124 YIIDEVHMLSQAAFNALLKTLEEPPPHVVFIFATTEDHKIPDTILSRCQ-HFRFRSLGVP 182

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
           ++   ++   +   L+        IA  S G+ R A  LL ++R
Sbjct: 183 EITAKLENIVRQESLSFPRAILNLIARASGGSLRDALSLLDQIR 226


>gi|72119213|gb|AAZ61476.1| DNA polymerase III, gamma subunit / DNA polymerase III, tau subunit
           [Ralstonia eutropha JMP134]
          Length = 745

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 56/296 (18%), Positives = 105/296 (35%), Gaps = 35/296 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPR      GQ      L   +E      + L H  LF G  G+GKTTL++++A+ L   
Sbjct: 26  RPRDFTTLVGQEHVVRALTHALE-----QQRLHHAYLFTGTRGVGKTTLSRILAKALNCT 80

Query: 82  FRSTSGPVIAKA-GDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAMEDFQ 133
               +G + A+  G   A       R V +I+        +  ++ ++++ +Y       
Sbjct: 81  GADGNGGITAQPCGQCKACTEIDSGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRF 140

Query: 134 LDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
              M+ E             ++++        I ATT    +   +  R  +   L    
Sbjct: 141 KVYMIDEVHMLTNHAFNAMLKTLEEPPGHVKFILATTDPQKIPVTVLSRC-LQFNLKQMP 199

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
              + + +       G+     A   +A  + G+ R A  L     D A    A  ++ E
Sbjct: 200 PAQIVSHLDNILGQEGIGHDGNALRLLAQAAHGSMRDALSL----TDQAIAYSAGEVSEE 255

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGI-ETISAGLSEPRDAIEDL 299
                L  +    +      ++ L  +A   G   +GI + ++        A++DL
Sbjct: 256 AVRGMLGAIDQGYL------VQLLDALAAEDGAALIGIADAMADRSLSFAGALQDL 305


>gi|320582960|gb|EFW97177.1| ATPase family protein [Pichia angusta DL-1]
          Length = 744

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 77/209 (36%), Gaps = 29/209 (13%)

Query: 11  NVSQEDADISLLR------PR-TLEEFTGQVEACSNLKVFIE----AA----KARAEALD 55
             S+ +   S +R      P+ + ++  GQ      LK  ++    AA    +    A  
Sbjct: 456 EESRSEIQPSAMREIVLEMPKVSWDDIGGQEVLKRKLKEMVQLPLTAANTFRRLGISAPK 515

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--D 107
            +L  GPPG  KT  A+ +A E G+NF +  GP +           +  +          
Sbjct: 516 GLLLYGPPGCSKTLTAKALASESGLNFLAIKGPEVFNKYVGESERKIREIFHKARTSAPS 575

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           ++FIDEI  L+   +      +    L+ M+ E          L    +I AT R   + 
Sbjct: 576 IIFIDEIDALATNRDSEDAGNVSRQVLNSMLNEIDGVE----ELKGVIIIGATNRPDSID 631

Query: 168 NPLQD--RFGIPIRLNFYEIEDLKTIVQR 194
             L    R    + +   +    K I+++
Sbjct: 632 PALLRPGRLDRHVYVAPPDRHARKQILEK 660


>gi|320163905|gb|EFW40804.1| DNA replication factor C subunit Rfc4 [Capsaspora owczarzaki ATCC
           30864]
          Length = 366

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 74/233 (31%), Gaps = 38/233 (16%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           +     E   +   RP  L++  G  +  + L++  E        + +++  G PG GKT
Sbjct: 44  TTTGQSEMPWVEKYRPILLKDVVGNEDTVARLQIIAEEG-----NMPNIIIAGQPGTGKT 98

Query: 69  TLAQVVAR-----ELGVNFRSTSGPVIAKAGDLAALLTNLEDR---------DVLFIDEI 114
           T    +A               +         +   +     +          V+ +DE 
Sbjct: 99  TSILCLAHQLLGPAYKNAVLELNASDDRGIDVVRNDIKMFAQKKVTLPPGRQKVIILDEA 158

Query: 115 HRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRF 174
             ++   ++ L   ME +                   +RF    A      +  P+Q R 
Sbjct: 159 DSMTEAAQQALRRTMEIYSAT----------------TRF--ALACNMSDKIIEPIQSRC 200

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
            I       + + LK +++       +  T+E    +   ++G  R A   L+
Sbjct: 201 AILRYTRLTDEQILKRLLE-ICDAEKVPRTEEGLTALIFTAQGDMRQAVNNLQ 252


>gi|307596113|ref|YP_003902430.1| AAA family ATPase [Vulcanisaeta distributa DSM 14429]
 gi|307551314|gb|ADN51379.1| AAA family ATPase, CDC48 subfamily [Vulcanisaeta distributa DSM
           14429]
          Length = 748

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 58/282 (20%), Positives = 94/282 (33%), Gaps = 42/282 (14%)

Query: 28  EEFTGQVEACSNLKVFIE--------AAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           ++  G       LK  +E          +   E    +L  GPPG GKT LA+ VA E  
Sbjct: 470 DDIGGYENVKQELKEMVEWPLKYPRYFEELGVEPPKGILLFGPPGTGKTLLAKAVATESN 529

Query: 80  VNFRSTSGPVIAKA--GDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAMED 131
            NF +  GP I     G+    +  +  +       V+F DEI  ++          ++ 
Sbjct: 530 ANFIAVRGPEILSKWFGESERAIREIFKKARMAAPCVIFFDEIDAIAPAR----GLRVDS 585

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
              D +V +  +       L    +IAAT R  ++   L    RF   + +   +     
Sbjct: 586 GATDRIVNQLLAEMDGIAPLKNVVVIAATNRADIIDPALLRPGRFDRIVYVPPPDANARF 645

Query: 190 TIVQ---RGAKLTGLAVTDEAACEIAMRSRGT-----------PRIAGRLLRRVRDFAEV 235
            I++   RG K     V D     +   +R T            R A  L  R    +  
Sbjct: 646 EILKVHIRGLK-LADDVKDGNYKYLRDLARRTEGYTGADLAALVREAAMLALRETIRSNT 704

Query: 236 AHAKTITREIADAALL-----RLAIDKMGFDQLDLRYLTMIA 272
              K +  E  + AL          D   F+++       + 
Sbjct: 705 NQVKPVGIEHFEEALKVVPPSLSKQDIARFEEMARNLRRTLR 746



 Score = 54.3 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 49/189 (25%), Positives = 72/189 (38%), Gaps = 24/189 (12%)

Query: 24  PR-TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVV 74
           PR T E+     EA   ++  IE      E   H        VL +GPPG GKT LA+ V
Sbjct: 176 PRVTWEDIGDLEEAKRKIRELIELPLRHPEIFKHLGIEPPKGVLLIGPPGTGKTLLAKAV 235

Query: 75  ARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILY 126
           A E    F S +GP I           L  +    +     ++FIDEI  ++   EE+  
Sbjct: 236 ASEANAYFISINGPEIMSKYYGESEAKLREIFEEAKKNAPAIIFIDEIDAIAPKREEVTG 295

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
              +     L+               +  +I AT R   +   L+   RF   I ++  +
Sbjct: 296 EVEKRVVAQLLT-----LMDGLQERGQVIVIGATNRPEAVDPALRRPGRFDREIYISMPD 350

Query: 185 IEDLKTIVQ 193
               K I+Q
Sbjct: 351 KNARKEILQ 359


>gi|242023130|ref|XP_002431989.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212517340|gb|EEB19251.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 942

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 51/241 (21%), Positives = 83/241 (34%), Gaps = 24/241 (9%)

Query: 26  TLEEFTGQVEACSNLKVFI------EAAKARAEALD-HVLFVGPPGLGKTTLAQVVAREL 78
           T  +F G  +    +   I      E  +    +     L  GPPG GKT LA  +A EL
Sbjct: 222 TFADFGGNTKVLEEVCKLILHIPHPEIFREIGISPPRGFLLHGPPGCGKTLLATAIAGEL 281

Query: 79  GVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAME 130
            V     S P +    +G+    +  L DR       VLFIDE+  +    +        
Sbjct: 282 DVELIQISAPELIGGVSGESEERIRELFDRAVESAPCVLFIDEVDAIMQNRQNAQREMER 341

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
                L+            +L    +I AT R   L   L+   RF   + +   +++  
Sbjct: 342 RIVAQLLTCLDELNTKENGDL--VLVIGATNRPDSLDPALRRAGRFDREVCIGIPDLKAR 399

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTP-RIAGRLLRRVRDFAEVAHAKTITREIAD 247
           + I+    K+    +           ++ TP  +   LL   R+ A VA       +  +
Sbjct: 400 EKIL----KVLCSTLNLAPNFSFEELAQHTPGYVGADLLALTREAAMVAVNSLEELKNKE 455

Query: 248 A 248
            
Sbjct: 456 K 456



 Score = 45.1 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 86/248 (34%), Gaps = 32/248 (12%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD--- 107
           A   +L  GPPG GKT LA+ VA E G+NF S  GP +     G+    +     R    
Sbjct: 697 APAGILICGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYVGESERAVRRCFQRARSS 756

Query: 108 ---VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164
              V+F DE+  L     +      E      +V +  +      +     ++AAT R  
Sbjct: 757 APCVIFFDELDSLCPRRSDT----PESGATMRVVNQLLTEMDGIEDRKEVYIMAATNRPD 812

Query: 165 LLTNP-LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLA---VTDEAACEIAMRSRGTPR 220
           ++    L+      I       E+ +  + R     G       D    +IA +      
Sbjct: 813 IIDPAVLRPGRLDKILYVGLPQEEDRVDILRAVTKNGTRPKLDKDVNLRDIAYKPECKGY 872

Query: 221 IAGRLLRRVRDF-------------AEVAHAKTITREIADAALLRLAIDKMGFDQLDLRY 267
               L   VR+              A+   + T++ +  + AL ++          D +Y
Sbjct: 873 SGADLAALVREAGIQSVKDFMSKTNADSKASVTVSLDHFERALKKIRPS---VSPEDQKY 929

Query: 268 LTMIARNF 275
              + + +
Sbjct: 930 YESLKKKY 937


>gi|124023247|ref|YP_001017554.1| FtsH ATP-dependent protease-like protein [Prochlorococcus marinus
           str. MIT 9303]
 gi|123963533|gb|ABM78289.1| FtsH ATP-dependent protease-like protein [Prochlorococcus marinus
           str. MIT 9303]
          Length = 638

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 63/274 (22%), Positives = 101/274 (36%), Gaps = 23/274 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
             ++  G  EA  +L+  +   K         A+    VL VGPPG GKT LA+ +A E 
Sbjct: 179 KFDDVAGVSEAKQDLEEVVTFLKKPERFTSVGAQIPRGVLLVGPPGTGKTLLAKAIAGEA 238

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG           A  +  L    ++    ++FIDEI  +       +    +
Sbjct: 239 GVPFFSLSGSEFVEMFVGVGASRVRDLFKRAKENTPCLIFIDEIDAVGRQRGAGIGGGND 298

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E           S   +IAAT R  +L + L    RF   + ++  +I+
Sbjct: 299 EREQTLNQLLTEMDGFEGN----SGIIIIAATNRPDVLDSALMRPGRFDRQVSVDSPDIK 354

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
               I++  A+   L                T      LL            K I+ +  
Sbjct: 355 GRLAILEVHARDKKLEEDLSLKNVARRTPGFTGADLANLLNEAAILTARRRKKAISLDEI 414

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV 280
           D A+ R+     G    D R   +IA +  G  +
Sbjct: 415 DDAVDRIIAGMEGRPLTDGRSKRLIAYHEVGHAL 448


>gi|158289863|ref|XP_311497.4| AGAP010451-PA [Anopheles gambiae str. PEST]
 gi|157018362|gb|EAA07151.4| AGAP010451-PA [Anopheles gambiae str. PEST]
          Length = 968

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 54/326 (16%), Positives = 106/326 (32%), Gaps = 65/326 (19%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI  ++ +      +L F GPPG+GKT++A+ +A+ L   +   S
Sbjct: 501 EDHYGMDDIKKRILEFIAVSQLKGTTQGKILCFHGPPGVGKTSIARSIAKALNREYFRFS 560

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ ++    +        
Sbjct: 561 VGGMTDVAEIKGHRRTYVGAMPGKLIQCLKKTKTENPLVLIDEVDKIGRGYQGDPSSALL 620

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V ++LS+   I     +  +  PL+DR  +     +
Sbjct: 621 ELLDPEQNVNFLD-------HYLDVPVDLSKVLFICTANVIDTIPEPLRDRMEMIDMSGY 673

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
              E L       AK   +      +         T      L++     + V + +   
Sbjct: 674 VAEEKLA-----IAKQYLIPQAKRDSGVEDKHISITDDALHALIKSYCRESGVRNLQKQI 728

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEP 302
            +I      ++   +  F +                 V    +S  L +          P
Sbjct: 729 EKIVRKVAFKVVRKEADFTE-----------------VSGTNLSDLLGK----------P 761

Query: 303 YMIQQGFIQRTPRGRLLMPIAWQHLG 328
              Q    + TP G ++M +AW  +G
Sbjct: 762 IFTQDRMYESTPPG-VVMGLAWTAMG 786


>gi|146293398|ref|YP_001183822.1| DNA polymerase III subunits gamma and tau [Shewanella putrefaciens
           CN-32]
 gi|145565088|gb|ABP76023.1| DNA polymerase III, subunits gamma and tau [Shewanella putrefaciens
           CN-32]
          Length = 957

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 50/241 (20%), Positives = 76/241 (31%), Gaps = 55/241 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQV-------- 73
           RP T E+  GQ      L   +       + L H  LF G  G+GKT+LA++        
Sbjct: 11  RPATFEQMVGQSHVLHALTNALS-----QQRLHHAYLFTGTRGVGKTSLARLFAKGLNCE 65

Query: 74  ----------------VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRD------VLFI 111
                           +A+   V+          K  D   LL N++ R       V  I
Sbjct: 66  QGVTATPCGVCGSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPTRGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSRSSFNALLKTLEE------------------PPEHVKFLLATTDPQKLPVTVL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L     +++ T +             EA   +A  + G+ R A  L  +   
Sbjct: 168 SRC-LQFNLKSLTQQEIGTQLNHILTQEQFPFEVEALTLLAKAANGSMRDALSLTDQAIA 226

Query: 232 F 232
           F
Sbjct: 227 F 227


>gi|157867059|ref|XP_001682084.1| peroxisome assembly protein [Leishmania major strain Friedlin]
 gi|68125536|emb|CAJ03401.1| putative peroxisome assembly protein [Leishmania major strain
           Friedlin]
          Length = 959

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/117 (30%), Positives = 51/117 (43%), Gaps = 15/117 (12%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQ 72
           + L+P    +  G  EA   L+  I+      E  +        VLF GPPG GKT LA+
Sbjct: 640 TKLQPVRWGDVGGLEEAKRELREMIQLPILHPEVFEKGMKKRTGVLFYGPPGCGKTLLAK 699

Query: 73  VVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIV 121
            VA E+G+NF S  GP +          ++  L     D    ++F DEI  L+   
Sbjct: 700 AVATEMGMNFISVKGPELINQYVGESERNIRLLFQRARDNSPCIVFFDEIDALAPAR 756


>gi|251794362|ref|YP_003009093.1| ATPase AAA [Paenibacillus sp. JDR-2]
 gi|247541988|gb|ACS99006.1| AAA ATPase central domain protein [Paenibacillus sp. JDR-2]
          Length = 594

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 55/273 (20%), Positives = 87/273 (31%), Gaps = 45/273 (16%)

Query: 26  TLEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T +++ G  E   N K  +          K   EA+  +L  GPPG GK+ LAQV+A E 
Sbjct: 81  TWDDYRGNPEIVENAKRIVSLLRGVKDFKKMGGEAIRGLLLCGPPGTGKSYLAQVIANEA 140

Query: 79  GVNFRSTSGPVIA----KAGDL--------AALLTNLEDRDVLFIDEIHRLSIIVE---- 122
            V F   S P         G+L        A  L  +    ++FIDE+  + +  +    
Sbjct: 141 QVPFAYASAPSFQNMFFGVGNLRVMRIYKKARKLARMYGACIIFIDEVDAIGMSRQSGGG 200

Query: 123 ---------------EILY----PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
                          E+L     P ++  +    + +    R  K        IAAT   
Sbjct: 201 GGGMFGMGGGTGLLNELLLQMDPPNLDSSRFKKFLRQLGLLRK-KAERPPVLTIAATNLP 259

Query: 164 GLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSR--GTPRI 221
            +L   L        +L     +    +   G  L  +        E A       +P  
Sbjct: 260 DVLDQALLRPGRFDRQLWVDSPDYDGRVDVFGYYLLKIKTDSTLTPEKAAMDTIGYSPAQ 319

Query: 222 AGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
              ++      A    A+    E   AA+    
Sbjct: 320 IKHIVNEAVVIAHQRGAQEAGYEDFRAAMETYE 352


>gi|161527613|ref|YP_001581439.1| ATPase AAA [Nitrosopumilus maritimus SCM1]
 gi|160338914|gb|ABX12001.1| AAA family ATPase, CDC48 subfamily [Nitrosopumilus maritimus SCM1]
          Length = 722

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 53/209 (25%), Positives = 82/209 (39%), Gaps = 32/209 (15%)

Query: 20  SLLR--PR-TLEEFTGQVEACSNLKVFIEAA--------KARAEALDHVLFVGPPGLGKT 68
             LR  P+ T E+  G  +    ++  IE          K   EA   VL  GPPG GKT
Sbjct: 166 ETLRGVPQVTYEDIGGLTDEIKKVREMIELPLRHPEIFEKLGIEAPKGVLLYGPPGTGKT 225

Query: 69  TLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSII 120
            LA+ VA E   +F S SGP I           L  +     ++   ++F+DEI  ++  
Sbjct: 226 LLAKAVANESNAHFISISGPEIMSKFYGESEARLREIFKEAREKAPSIIFVDEIDSIAPK 285

Query: 121 VEEILYPA---MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFG 175
            EE+       +    L LM G     + + I        +AT R   +   L+   RF 
Sbjct: 286 REEVTGEVERRVVSQMLSLMDGLEARGKVIVI--------SATNRPNAIDPALRRPGRFD 337

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVT 204
             I +   + +  K I+   ++   L+  
Sbjct: 338 REIEIKVPDKKGRKDILAIHSRNMPLSDD 366



 Score = 47.0 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 72/195 (36%), Gaps = 22/195 (11%)

Query: 28  EEFTGQVEACSNLKVFIE--------AAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +E  G  +    L+  +E          K        +L  GP G GKT LA+ VA +  
Sbjct: 450 DEVGGLEDVKRELQEAVEWPMKYPALYDKLGHSMPRGILLHGPSGTGKTLLAKAVATQSE 509

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMED 131
            NF S  GP +           +  +          V+F DEI  ++ I       A+ +
Sbjct: 510 ANFVSVRGPELLSKWVGESERGIREIFKRARQSAPCVVFFDEIDSIAPIRGAGGETAVTE 569

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
             +  ++ E     ++        ++AAT R  ++   L    RF   I++   + +  K
Sbjct: 570 RVVSQLLTELDGMENMHG----VVVLAATNRADMIDPALLRPGRFDKIIQVPNPDKDSRK 625

Query: 190 TIVQRGAKLTGLAVT 204
            I++  A+   +   
Sbjct: 626 RILEINAEKIPMGDD 640


>gi|326509267|dbj|BAJ91550.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 840

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 46/256 (17%), Positives = 86/256 (33%), Gaps = 39/256 (15%)

Query: 10  RNVSQEDADISLLRPR---------TLEEFTGQVEACSNLKVFIEAAKARAEALDH---- 56
             V  ++     +RP          + ++     +   +L+  +     R +        
Sbjct: 504 PEVPPDNEFEKRIRPEVIPANEIGVSFDDIGALEDIKESLQELVMLPLRRPDLFKGGLLK 563

Query: 57  ----VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLED- 105
               +L  GPPG GKT LA+ +A E   +F + S   I          ++ AL T     
Sbjct: 564 PCRGILLFGPPGTGKTMLAKAIANEAQASFINVSMSTITSKWFGEDEKNVRALFTLAAKV 623

Query: 106 -RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSR----FTLIAAT 160
              ++F+DE+  +               ++     +          LSR      ++AAT
Sbjct: 624 SPTIIFVDEVDSML-GQRNRAGEHEAMRKI-----KNEFMTHWDGLLSRPDQKILVLAAT 677

Query: 161 TRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPR 220
            R   L   +  RF   I +    +++ + I++R   L      DE      +    T  
Sbjct: 678 NRPFDLDEAIIRRFERRIMVGLPSVQNREMIMRR---LLSKEKVDEGLDYKEL-GTITEG 733

Query: 221 IAGRLLRRVRDFAEVA 236
            +G  L+ +   A   
Sbjct: 734 YSGSDLKNLCTTAAYR 749


>gi|307179447|gb|EFN67771.1| Lon protease-like protein, mitochondrial [Camponotus floridanus]
          Length = 1003

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 47/280 (16%), Positives = 90/280 (32%), Gaps = 43/280 (15%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI  ++ +      +L F GPPG+GKT++A+ ++R L   +   S
Sbjct: 521 EDHYGMEDIKKRILEFIAVSQLKGSTQGKILCFYGPPGVGKTSIAKSISRALNREYFRFS 580

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ ++    +        
Sbjct: 581 VGGMTDVAEIKGHRRTYVGAMPGKVIQCLKKTKTENPLILIDEVDKIGKGHQGDPASALL 640

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD  +        V ++LS+   I     +  +  PL+DR  +     +
Sbjct: 641 EMLDPEQNANFLDHYL-------DVPVDLSKVLFICTANVIDTIPEPLRDRMEMIDMSGY 693

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH-AKTI 241
              E L       AK   +            +          L++     + V +  K I
Sbjct: 694 VAEEKLA-----IAKQYLVPQARTECGLTNDQINIQDNALTTLIKSYCRESGVRNLQKHI 748

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVG 281
            +     A   +  +    D             F G PV 
Sbjct: 749 EKVHRKVAFKVVRKEANKIDVSANNLQE-----FVGKPVF 783


>gi|292656819|ref|YP_003536716.1| cell division control protein 48 [Haloferax volcanii DS2]
 gi|291371169|gb|ADE03396.1| cell division control protein 48 [Haloferax volcanii DS2]
          Length = 754

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 57/267 (21%), Positives = 91/267 (34%), Gaps = 33/267 (12%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
           T E+  G  +    ++  IE      E            VL  GPPG GKT +A+ VA E
Sbjct: 188 TYEDIGGLDKELEQVREMIELPMRHPELFKRLGIEPPKGVLLHGPPGTGKTLIAKAVANE 247

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
           +  +F + SGP I           L  +     +    ++FIDEI  ++    E      
Sbjct: 248 IDASFHTISGPEIMSKYYGESEEQLREIFEEATENSPAIVFIDEIDSIAPKRSEAGGDVE 307

Query: 130 ED---FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
                  L LM G       V I         AT RV  + N L+   RF   I +   +
Sbjct: 308 RRVVAQLLSLMDGLDERGEVVVI--------GATNRVDAIDNALRRGGRFDREIEIGVPD 359

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            +  K I+Q   +   L        ++   +  T    G  L  +   + +   + I  +
Sbjct: 360 RDGRKEIMQVHTRNMPLTDD----VDLDAYADSTHGFVGADLESLAKESAMHALRRIRPQ 415

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMI 271
           +   A    A    G    +  +   +
Sbjct: 416 LDLDAEEIDAEVLEGLKVTEDDFKQAL 442



 Score = 46.6 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 42/108 (38%), Gaps = 16/108 (14%)

Query: 26  TLEEFTGQVEACSNLKVFIE--------AAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           T E+  G       L+  I+          +   +A   VL  GPPG GKT LA+ VA E
Sbjct: 461 TWEDVGGLEPTKERLRETIQWPLEYPEVFQQMDMDAAKGVLMYGPPGTGKTLLAKAVANE 520

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRL 117
              NF S  GP +           +  +     +    V+F DEI  +
Sbjct: 521 AESNFISIKGPELLNKFVGESEKGVREVFKKARENAPTVVFFDEIDSI 568


>gi|206603199|gb|EDZ39679.1| DNA polymerase III subunit gamma/tau [Leptospirillum sp. Group II
           '5-way CG']
          Length = 540

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 75/222 (33%), Gaps = 21/222 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+   +  GQ          +    +  +    +LF G  G+GKTT+A+++A+ +    
Sbjct: 12  RPQLFSDLVGQEFVV----RALTGTLSSGKLPQALLFSGDRGVGKTTVARILAKAINCEK 67

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL-----YPAMEDFQLDLM 137
             T  P   +      +       DVL ID      +     L     Y          +
Sbjct: 68  GPTVNP-CQECDSCLEITRGTSP-DVLEIDGASHTGVEDIRSLREGIRYLPFRSRSRVYI 125

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT    + + +  R     R     + ++
Sbjct: 126 IDEVHMLSQAAFNALLKTLEEPPPHVVFIFATTEDHKIPDTILSRCQ-HFRFRSLGVPEI 184

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
              ++   +   L+        IA  S G+ R A  LL ++R
Sbjct: 185 TAKLENIVRQELLSFPRAILNLIARASGGSLRDALSLLDQIR 226


>gi|326529071|dbj|BAK00929.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 840

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 46/256 (17%), Positives = 86/256 (33%), Gaps = 39/256 (15%)

Query: 10  RNVSQEDADISLLRPR---------TLEEFTGQVEACSNLKVFIEAAKARAEALDH---- 56
             V  ++     +RP          + ++     +   +L+  +     R +        
Sbjct: 504 PEVPPDNEFEKRIRPEVIPANEIGVSFDDIGALEDIKESLQELVMLPLRRPDLFKGGLLK 563

Query: 57  ----VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLED- 105
               +L  GPPG GKT LA+ +A E   +F + S   I          ++ AL T     
Sbjct: 564 PCRGILLFGPPGTGKTMLAKAIANEAQASFINVSMSTITSKWFGEDEKNVRALFTLAAKV 623

Query: 106 -RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSR----FTLIAAT 160
              ++F+DE+  +               ++     +          LSR      ++AAT
Sbjct: 624 SPTIIFVDEVDSML-GQRNRAGEHEAMRKI-----KNEFMTHWDGLLSRPDQKILVLAAT 677

Query: 161 TRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPR 220
            R   L   +  RF   I +    +++ + I++R   L      DE      +    T  
Sbjct: 678 NRPFDLDEAIIRRFERRIMVGLPSVQNREMIMRR---LLSKEKVDEGLDYKEL-GTITEG 733

Query: 221 IAGRLLRRVRDFAEVA 236
            +G  L+ +   A   
Sbjct: 734 YSGSDLKNLCTTAAYR 749


>gi|307266278|ref|ZP_07547819.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|326391162|ref|ZP_08212707.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter ethanolicus
           JW 200]
 gi|306918728|gb|EFN48961.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|325992795|gb|EGD51242.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 611

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 62/246 (25%), Positives = 89/246 (36%), Gaps = 23/246 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAK-------ARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  E    L+  +E  K         A     VL VGPPG GKT LA+ VA E 
Sbjct: 159 TFNDVAGADEEKEELQEIVEFLKYPKKFIELGARIPKGVLLVGPPGTGKTLLAKAVAGEA 218

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG       V   A  +  L    +     ++FIDEI  +       L    +
Sbjct: 219 GVPFFSISGSDFVEMFVGVGAARVRDLFDQAKKNAPCIVFIDEIDAVGRQRGAGLGGGHD 278

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E       +       +IAAT R  +L   L    RF   I +   +I+
Sbjct: 279 EREQTLNQLLVEMDGFSVNEG----IIVIAATNRPDILDPALLRPGRFDRHITVGIPDIK 334

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++  A+   LA               T      L+      A     K IT    
Sbjct: 335 GREEILKIHARNKPLAPDVSLQVLARRTPGFTGADLENLMNEAALLAARRGLKQITMAEL 394

Query: 247 DAALLR 252
           + A+ R
Sbjct: 395 EEAITR 400


>gi|302806390|ref|XP_002984945.1| hypothetical protein SELMODRAFT_156952 [Selaginella moellendorffii]
 gi|300147531|gb|EFJ14195.1| hypothetical protein SELMODRAFT_156952 [Selaginella moellendorffii]
          Length = 595

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 55/274 (20%), Positives = 95/274 (34%), Gaps = 23/274 (8%)

Query: 26  TLEEFTG-----QV--EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G     Q   E    LK         A+    VL VGPPG GKT LA+ +A E 
Sbjct: 131 TFNDVAGVDEAKQDFMEVVEFLKRPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA 190

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG           A  +  L    ++    ++F+DEI  +       +    +
Sbjct: 191 GVPFFSISGSEFVEVFVGIGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGND 250

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E               ++AAT R  +L   L    RF   + ++  +++
Sbjct: 251 EREQTLNQLLTEMDGFEGNTG----VIVVAATNRADILDAALLRPGRFDRQVSVDVPDVK 306

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
               I++  +                     +      LL      A       I+ +  
Sbjct: 307 GRTEILRVHSGNKKFDGDVSLEVIAMRTPGFSGADLANLLNEAAILAGRRGKTAISAKEI 366

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV 280
           D ++ R+     G    D +  +++A +  G  V
Sbjct: 367 DDSIDRIVAGMEGTTMTDGKTKSLVAYHEVGHAV 400


>gi|123968548|ref|YP_001009406.1| cell division protein FtsH4 [Prochlorococcus marinus str. AS9601]
 gi|123198658|gb|ABM70299.1| cell division protein FtsH4 [Prochlorococcus marinus str. AS9601]
          Length = 584

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 55/267 (20%), Positives = 102/267 (38%), Gaps = 33/267 (12%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVARE 77
              ++  G  EA   LK  I   K         A+    VL +GPPG GKT LA+ +A E
Sbjct: 131 TRFDDVAGVPEAAEELKEVITFLKEPKKFENLGAKVPKGVLLIGPPGTGKTLLAKAIAGE 190

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
            GV F S S            A  +  L +  +++   ++FIDEI  +       +    
Sbjct: 191 SGVPFLSISASEFVELFVGVGASRVRDLFSKAKEKSPCIIFIDEIDSIGRQRGSGIGGGN 250

Query: 130 EDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           ++ +  L  ++ E         + S   ++AAT R  +L + L    RF   I +   ++
Sbjct: 251 DEREQTLNQLLTELDGF----ADNSGIIVLAATNRPDILDSALLRPGRFDRKIEVMLPDL 306

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           +  K I+     +  L+       ++   +  T   +G       D A + +   I    
Sbjct: 307 DGRKKILS----VHSLSKPLSNEVDLGYWASRTVGFSG------ADLANLMNESAIHCAR 356

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIA 272
            ++ L+     +   D++ +   + + 
Sbjct: 357 DESKLISDLHIENALDKITIGLRSSLI 383


>gi|62184957|ref|YP_219742.1| DNA polymerase III subunits gamma and tau [Chlamydophila abortus
           S26/3]
 gi|62148024|emb|CAH63776.1| DNA polymerase III subunit gamma/tau [Chlamydophila abortus S26/3]
          Length = 443

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 54/182 (29%), Gaps = 41/182 (22%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
              RP+T  E  GQ    + LK  ++  +         LF G  G GKTTLA++ A+ L 
Sbjct: 11  RKYRPQTFAEMLGQDAVVTVLKNALQFQRVAHAY----LFSGIRGTGKTTLARIFAKALN 66

Query: 80  VN-------------------------FRSTSGPVIAKAGDLAALLTNL------EDRDV 108
                                           G       D+  +   +          +
Sbjct: 67  CKELTPEHEPCNQCCVCKEISSGTSLDVIEIDGASHRGIEDIRQINETVLFTPAKSQYKI 126

Query: 109 LFIDEIHRLSIIVEEILYPAMEDF----QLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164
             IDE+H L+      L   +E+     +  L   E     S    LSR   +       
Sbjct: 127 YIIDEVHMLTKEAFNSLLKTLEEPPSHVKFFLATTENYKIPST--ILSRCQKMHLKRIPE 184

Query: 165 LL 166
            +
Sbjct: 185 TM 186


>gi|86151077|ref|ZP_01069293.1| DNA polymerase III, gamma/tau subunits [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|315124629|ref|YP_004066633.1| DNA polymerase III, gamma/tau subunits [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|85842247|gb|EAQ59493.1| DNA polymerase III, gamma/tau subunits [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|315018351|gb|ADT66444.1| DNA polymerase III, gamma/tau subunits [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
          Length = 509

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 52/235 (22%), Positives = 86/235 (36%), Gaps = 27/235 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     RP+T +E  GQ     +LK  +         L H  LF G  G GKT+ A++ +
Sbjct: 4   ALAIKYRPKTFDELIGQKTVSVSLKYAL-----NHNRLAHAYLFSGLRGSGKTSSARIFS 58

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHR-----LSIIVEEILY-P 127
           R L        GP     G     L  LE +  D++ +D         +  ++E+  Y P
Sbjct: 59  RALVCE----QGPSDTPCGTCKHCLAALEGKHIDIIEMDAASNRGLEDIQTLIEQTKYTP 114

Query: 128 AMEDFQLDLMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +M  F++ ++               ++++   S    I ATT    L   +  R      
Sbjct: 115 SMARFKIFIIDEVHMLTPQAANALLKTLEEPPSYVKFILATTDPLKLPATVLSRTQHFRF 174

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
               + E L   ++       +   +EA   IA    G+ R    LL +   F +
Sbjct: 175 KQIPQSEIL-NHLKEILLKENVKFEEEALKFIARSGNGSLRDTLTLLDQAIIFCQ 228


>gi|288927650|ref|ZP_06421497.1| cell division protein FtsH [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288330484|gb|EFC69068.1| cell division protein FtsH [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 667

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 56/249 (22%), Positives = 99/249 (39%), Gaps = 28/249 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ  A   ++  +E  K+         +     L VGPPG GKT LA+ VA E 
Sbjct: 193 TFKDVAGQEGAKQEVQEIVEFLKSPQKYTDLGGKIPKGALLVGPPGTGKTLLAKAVAGEA 252

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM- 129
           GV F S SG       V   A  +  L    +++   ++FIDEI  +     +   P+M 
Sbjct: 253 GVPFFSMSGSDFVEMFVGVGASRVRDLFHQAKEKSPCIIFIDEIDAVGRARSKN--PSMG 310

Query: 130 ----EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183
                +  L+ ++ E     +     S   ++AAT R  +L + L    RF   I ++  
Sbjct: 311 GNDERENTLNALLTEMDGFGTN----SGVIILAATNRADMLDSALLRAGRFDRQINVDLP 366

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           ++ + K I Q   +   +  T +           +      +       A   ++K++ +
Sbjct: 367 DLPERKQIFQVHLRPVKVDSTVDIDFLSRQTPGFSGADIANVCNEAALIAARHNSKSVGK 426

Query: 244 EIADAALLR 252
           +    A+ R
Sbjct: 427 QDFLDAVDR 435


>gi|327353808|gb|EGE82665.1| cell division protease ftsH [Ajellomyces dermatitidis ATCC 18188]
          Length = 804

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 56/260 (21%), Positives = 90/260 (34%), Gaps = 27/260 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G  EA   L+  +E             +    VL VGPPG GKT LA+ VA E 
Sbjct: 338 RFSDVHGCDEAKEELQELVEFLTNPERFNTLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 397

Query: 79  GVNFRSTSGPVIA------KAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAME 130
           GV F   SG           A  +  L      +   ++FIDE+  +     E    A  
Sbjct: 398 GVPFFYMSGSEFDEVYVGVGAKRVRELFNQARTKAPAIIFIDELDAIGAKRNER-DAAYV 456

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
              L+ ++ E               +IAAT    LL   L    RF   + +   ++   
Sbjct: 457 KQTLNQLLTELDGFSQSTG----VIIIAATNYPKLLDKALTRPGRFDRRVVVGLPDVRGR 512

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             I++   K   ++       +  + +RGTP  +G  L  + + A +  +K    ++   
Sbjct: 513 VDILKHHMKNVQISTD----VDTTVIARGTPGFSGADLENLVNQAAIHASKNRQTKVGPK 568

Query: 249 ALLRLAI-DKMGFDQLDLRY 267
                     MG +      
Sbjct: 569 DFDWAKDKIMMGAEARSRVM 588


>gi|258647438|ref|ZP_05734907.1| putative cell division protein FtsH [Prevotella tannerae ATCC
           51259]
 gi|260852704|gb|EEX72573.1| putative cell division protein FtsH [Prevotella tannerae ATCC
           51259]
          Length = 712

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 57/266 (21%), Positives = 102/266 (38%), Gaps = 29/266 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  GQ  A   ++  +E  K          +     L VGPPG GKT LA+ VA E 
Sbjct: 185 TFADVAGQESAKEEVQEIVEFLKNPSKYTELGGKIPKGALLVGPPGTGKTLLAKAVAGEA 244

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIV-EEILYPAM 129
            V F S SG       V   A  +  L    +++   ++FIDEI  +     +   +   
Sbjct: 245 HVPFFSLSGSDFVEMFVGVGASRVRDLFRQAKEKAPCIIFIDEIDAVGRARGKNASFGGN 304

Query: 130 EDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           ++ +  L  ++ E     +     S   ++AAT RV +L   L    RF   I ++  ++
Sbjct: 305 DERENTLNQLLTEMDGFGTN----SGVIILAATNRVDILDKALLRAGRFDRQIHVDLPDL 360

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
            +   I +   +          A +I + +R TP  +G  +  V + + +  A+     +
Sbjct: 361 PERIAIFKVHLRPLKYD----PALDIELLARQTPGFSGADIANVCNESALIAARHNHITV 416

Query: 246 ADAA-LLRLAIDKMGFDQLDLRYLTM 270
                L  +     G ++ +      
Sbjct: 417 TRQDFLDAVDRIIGGLEKKNKVMTEA 442


>gi|261191725|ref|XP_002622270.1| intermembrane space AAA protease IAP-1 [Ajellomyces dermatitidis
           SLH14081]
 gi|239589586|gb|EEQ72229.1| intermembrane space AAA protease IAP-1 [Ajellomyces dermatitidis
           SLH14081]
 gi|239608671|gb|EEQ85658.1| intermembrane space AAA protease IAP-1 [Ajellomyces dermatitidis
           ER-3]
          Length = 807

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 56/260 (21%), Positives = 90/260 (34%), Gaps = 27/260 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G  EA   L+  +E             +    VL VGPPG GKT LA+ VA E 
Sbjct: 341 RFSDVHGCDEAKEELQELVEFLTNPERFNTLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 400

Query: 79  GVNFRSTSGPVIA------KAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAME 130
           GV F   SG           A  +  L      +   ++FIDE+  +     E    A  
Sbjct: 401 GVPFFYMSGSEFDEVYVGVGAKRVRELFNQARTKAPAIIFIDELDAIGAKRNER-DAAYV 459

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
              L+ ++ E               +IAAT    LL   L    RF   + +   ++   
Sbjct: 460 KQTLNQLLTELDGFSQSTG----VIIIAATNYPKLLDKALTRPGRFDRRVVVGLPDVRGR 515

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             I++   K   ++       +  + +RGTP  +G  L  + + A +  +K    ++   
Sbjct: 516 VDILKHHMKNVQISTD----VDTTVIARGTPGFSGADLENLVNQAAIHASKNRQTKVGPK 571

Query: 249 ALLRLAI-DKMGFDQLDLRY 267
                     MG +      
Sbjct: 572 DFDWAKDKIMMGAEARSRVM 591


>gi|170744864|ref|YP_001773519.1| ATPase central domain-containing protein [Methylobacterium sp.
           4-46]
 gi|168199138|gb|ACA21085.1| AAA ATPase central domain protein [Methylobacterium sp. 4-46]
          Length = 354

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 55/240 (22%), Positives = 83/240 (34%), Gaps = 34/240 (14%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAK---------ARAEALD-HVLFVGPPGLGKTTLAQVVA 75
           +L+   G  E  + L+  IE  K          R   L  H++F GPPG+GKT +A++  
Sbjct: 92  SLDRLIGLAEVKAELRTLIERLKVEAARRDAGMRVSPLSLHMVFTGPPGVGKTVVARLYG 151

Query: 76  RELGVNFRSTSGPVIA--KAGDLAALLTNLEDRD----------VLFIDEIHRLSIIVEE 123
             L       SG ++   ++G +A  +     +           VLFIDE + L+    +
Sbjct: 152 AALRELGVLESGHIVETDRSGLVAGYVGQTALKTRQRIAEALDGVLFIDEAYALAPRQGD 211

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
                  D  L  M  +      +             +  G     L  RF   +    Y
Sbjct: 212 AFGQEAIDTLLKEMEDQRDRLVVIVAGYPEPLQDFLRSNPG-----LPSRFTKTLAFAPY 266

Query: 184 EIEDLKTIVQRG-AKLTGLAVTDEA------ACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
           + E L  I     A+        +A      A E A  S    R A  LL R R+   V 
Sbjct: 267 DDELLAIIRAMAEAEGLRFEDGCDARLRASFARERARPSFANARTARTLLERAREAQAVR 326


>gi|126174787|ref|YP_001050936.1| DNA polymerase III subunits gamma and tau [Shewanella baltica
           OS155]
 gi|125997992|gb|ABN62067.1| DNA polymerase III, subunits gamma and tau [Shewanella baltica
           OS155]
          Length = 1147

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 49/241 (20%), Positives = 75/241 (31%), Gaps = 55/241 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQV-------- 73
           RP T ++  GQ      L   +       + L H  LF G  G+GKT+LA++        
Sbjct: 38  RPATFDQMVGQSHVLHALTNALS-----QQRLHHAYLFTGTRGVGKTSLARLFAKGLNCE 92

Query: 74  ----------------VARELGVNFRSTSGPVIAKAGDLAALLTNLEDRD------VLFI 111
                           +A+   V+          K  D   LL N++ R       V  I
Sbjct: 93  QGVTATPCGACGSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPTRGRFKVYLI 152

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 153 DEVHMLSRSSFNALLKTLEE------------------PPEHVKFLLATTDPQKLPVTVL 194

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L      ++ T +             EA   +A  + G+ R A  L  +   
Sbjct: 195 SRC-LQFNLKSLTQGEIGTQLNHILTQEQFPFDAEAIKLLAKAANGSMRDALSLTDQAIA 253

Query: 232 F 232
           F
Sbjct: 254 F 254


>gi|332030728|gb|EGI70404.1| Paraplegin [Acromyrmex echinatior]
          Length = 725

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 48/204 (23%), Positives = 85/204 (41%), Gaps = 13/204 (6%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA------KAGDLAALLTNLEDR--DV 108
           VL +GPPG GKT LA+ VA E  V F S +G           A  +  L    E R   +
Sbjct: 293 VLLLGPPGCGKTLLAKAVATEASVPFLSMNGSEFIEVFGGLGAARVRHLFKEAEKRAPSI 352

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           ++IDEI  +     E     + D + +  + +        I      ++A+T R  +L  
Sbjct: 353 IYIDEIDAIGKKRSESSL-GIGDRESERTLNQLLVEMDGMIAKENVIILASTNRAEVLDK 411

Query: 169 PLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
            L    RF   I ++   +E+ + I +   K   +++ D+        +  TP  +G  +
Sbjct: 412 ALLRPGRFDRHILIDLPTLEERQQIFETHLKK--ISLEDKPWKYSRYLAFLTPGFSGADI 469

Query: 227 RRVRDFAEVAHAKTITREIADAAL 250
             V + A +  A+ + +++    L
Sbjct: 470 ANVCNEAALHAARDMKKQVDSNDL 493


>gi|319786409|ref|YP_004145884.1| ATP-dependent metalloprotease FtsH [Pseudoxanthomonas suwonensis
           11-1]
 gi|317464921|gb|ADV26653.1| ATP-dependent metalloprotease FtsH [Pseudoxanthomonas suwonensis
           11-1]
          Length = 644

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 54/249 (21%), Positives = 90/249 (36%), Gaps = 23/249 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAA-------KARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  EA   +   +E         K   +    VL VGPPG GKT LA+ +A E 
Sbjct: 164 TFADVAGCDEAKEEVGELVEFLRDPSKFQKLGGKIPRGVLMVGPPGTGKTLLARAIAGEA 223

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  +    +     ++FIDEI  +       L    +
Sbjct: 224 RVPFFSISGSDFVEMFVGVGASRVRDMFEQAKKHAPCIIFIDEIDAVGRHRGAGLGGGHD 283

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E       +       +IAAT R  +L   L    RF   + +   +++
Sbjct: 284 EREQTLNQLLVEMDGFEGGEG----VIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVK 339

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++   +   LA   E           +      L      FA   + K +  +  
Sbjct: 340 GREQILKVHMRKLPLADDVEPMVIARGTPGFSGADLANLCNEAALFAARGNEKEVRMDHF 399

Query: 247 DAALLRLAI 255
           D A  ++ +
Sbjct: 400 DRARDKILM 408


>gi|315453521|ref|YP_004073791.1| ATP-dependent protease La [Helicobacter felis ATCC 49179]
 gi|315132573|emb|CBY83201.1| ATP-dependent protease La [Helicobacter felis ATCC 49179]
          Length = 811

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 75/226 (33%), Gaps = 36/226 (15%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLT--------------- 101
           + F GPPG+GKT+LA  +A+ +       +   +    +L                    
Sbjct: 356 LCFYGPPGVGKTSLANSIAKAISRPLVRIALGGLEDVNELRGHRRTYLGSMPGRIVQGLI 415

Query: 102 NLEDRD-VLFIDEIHRLSIIV--------EEILYPAMEDFQLDLMVGEGPSARSVKINLS 152
             +  D V+ +DEI ++   +         EIL P       D          +  I+LS
Sbjct: 416 EAKKMDCVMVLDEIDKVDKSMRGDPASALLEILDPEQNTSFRDYYT-------NFNIDLS 468

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIA 212
           +   IA       +  PL+DR       + Y  ++ + I    A+   +    +     +
Sbjct: 469 KIIFIATANDTATIPPPLRDRMEFISVSS-YTPQEKEQI----ARNYLIPQELKKHALKS 523

Query: 213 MRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKM 258
                TP     ++ +    A V   +     I      ++  D+ 
Sbjct: 524 TEVSFTPEAVQLIIEKYTREAGVRGLRRAVATIMRKCAKKILHDQE 569


>gi|313231514|emb|CBY08628.1| unnamed protein product [Oikopleura dioica]
          Length = 1239

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 70/177 (39%), Gaps = 26/177 (14%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVN------FRSTSGPVIAK-AGDLAALL 100
           K   +    VLF GPPG GKT +A+ +A E   +      F      V++K  G+    L
Sbjct: 267 KFSVQPPRGVLFYGPPGTGKTLMARALANECSQDGKKLAFFMRKGSDVLSKWVGESERQL 326

Query: 101 TNLEDR------DVLFIDEIHRLSIIV---EEILYPAMEDFQLDLMVGEGPSARSVKINL 151
             L D+       ++F DEI  L+ +    ++ ++ ++    L LM G       + I  
Sbjct: 327 RLLFDQAYRMRPSIIFFDEIDGLAPVRSSKQDHIHSSIVSTLLALMDGLDSRGEVIVI-- 384

Query: 152 SRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDE 206
                  AT RV  +   L+   RF   I       E    I++  AK   +   +E
Sbjct: 385 ------GATNRVDAIDPALRRPGRFDREILFPLPSAEARMQILKIHAKKWEIKPNEE 435


>gi|229896122|ref|ZP_04511292.1| DNA polymerase III subunits gamma and tau [Yersinia pestis
           Pestoides A]
 gi|229701045|gb|EEO89074.1| DNA polymerase III subunits gamma and tau [Yersinia pestis
           Pestoides A]
          Length = 653

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 41/240 (17%), Positives = 74/240 (30%), Gaps = 53/240 (22%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF-- 82
           +T  +  GQ    + L        +        LF G  G+GKT++A+++A+ L      
Sbjct: 8   KTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 63

Query: 83  ----------------------RSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEI 114
                                          K  D   LL N++         V  IDE+
Sbjct: 64  TATPCGTCANCQEIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEV 123

Query: 115 HRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRF 174
           H LS      L   +E+                    +    + ATT    L   +  R 
Sbjct: 124 HMLSRHSFNALLKTLEE------------------PPAHVKFLLATTDPQKLPVTILSRC 165

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
            +   L   ++E ++  +++      +     A   +A  + G+ R A  L  +     +
Sbjct: 166 -LQFHLKALDVEQIRAQLEKVLLAEQITSDARALQLLARAADGSMRDALSLTDQAVSMGQ 224


>gi|193605856|ref|XP_001945771.1| PREDICTED: replication factor C subunit 2-like isoform 1
           [Acyrthosiphon pisum]
 gi|328696454|ref|XP_003240029.1| PREDICTED: replication factor C subunit 2-like isoform 2
           [Acyrthosiphon pisum]
          Length = 363

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 77/225 (34%), Gaps = 38/225 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             I   RP++  +  G  E    L+ F     +    + +++  GPPG+GKTT    +AR
Sbjct: 47  PWIEKYRPKSFTDIVGNEETVLRLEKF-----SSCGNVPNIIIAGPPGVGKTTTILALAR 101

Query: 77  ------------ELGVNFRSTSGPVIAKAGDLAALLTNL--EDRDVLFIDEIHRLSIIVE 122
                       EL  +       V  K    A     L      ++ +DE   ++   +
Sbjct: 102 ILLGGAFKEAVLELNASSDRGIDTVRNKIKMFAQQKVTLPPGRHKIIILDEADSMTDGAQ 161

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           + L   ME                +  N +RF    A      +   +Q R  +      
Sbjct: 162 QALRRTME----------------LWSNTTRF--ALACNNSDKIIEAIQSRCAMLRYGKL 203

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
            + E +  +++   K   ++ + +    +   ++G  R A   L+
Sbjct: 204 SDQEVMTQMLK-VCKSEEVSFSADGLEAVVFTAQGDMRQALNNLQ 247


>gi|160900335|ref|YP_001565917.1| DNA polymerase III subunits gamma and tau [Delftia acidovorans
           SPH-1]
 gi|160365919|gb|ABX37532.1| DNA polymerase III, subunits gamma and tau [Delftia acidovorans
           SPH-1]
          Length = 731

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 62/217 (28%), Gaps = 45/217 (20%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARE 77
               RPR   E  GQ      L   +       + L H  LF G  G+GKTT+++++A+ 
Sbjct: 7   ARKYRPRNFSEMVGQEHVVQALTNALT-----QQRLHHAYLFTGTRGVGKTTVSRILAKS 61

Query: 78  LGVN-----------------------------FRSTSGPVIAKAGDLAALLTNL----- 103
           L                                +            ++ +LL        
Sbjct: 62  LNCQGADGQGGITATPCGVCAACTEIDSGRFPDYTELDAASNRGVDEVQSLLEQAVYKPV 121

Query: 104 -EDRDVLFIDEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAAT 160
                V  IDE+H L+      +   +E+    L  ++      +     LSR       
Sbjct: 122 QGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNLR 181

Query: 161 TRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
                    L+    +  +           ++ R A+
Sbjct: 182 PMAPETV--LEHLGQVLGQEGVASEPQALRLLSRAAR 216


>gi|330790803|ref|XP_003283485.1| hypothetical protein DICPUDRAFT_44885 [Dictyostelium purpureum]
 gi|325086595|gb|EGC39982.1| hypothetical protein DICPUDRAFT_44885 [Dictyostelium purpureum]
          Length = 627

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 58/248 (23%), Positives = 96/248 (38%), Gaps = 29/248 (11%)

Query: 23  RPRT-LEEFTGQVEACSNLKVFIEAAK-------ARAEALDHVLFVGPPGLGKTTLAQVV 74
           RP+T   +  G  EA   L+  ++  +               +L VGPPG GKT LA+ +
Sbjct: 15  RPKTTFNDVIGAEEAKGELQDLVDFLRSPYKYYSKGIVIPKGILLVGPPGTGKTLLAKSL 74

Query: 75  ARELGVNFRSTSGPVIA------KAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEIL- 125
           A E  V+F + +G           A  +  L          ++FIDEI  +     + + 
Sbjct: 75  AGEAQVSFITINGSEFEEAFVGVGARRVRDLFQTARKNAPCIVFIDEIDSVGGSRSKRVN 134

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183
           Y   E     L+  +G + R   +      +IAAT     L   L    RF   I++   
Sbjct: 135 YHPSEALNQLLVELDGFTGREGVM------VIAATNYQETLDAALIRSGRFDRIIQVPLP 188

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           + +  K I++   K         A  +    ++ TP  +G  L  + ++A +   K    
Sbjct: 189 DGKARKNIIEHYLK----GKIVSAKVDTTTIAQSTPGFSGADLFNLVNWAALDTIKHNKP 244

Query: 244 EIADAALL 251
           EI+  AL 
Sbjct: 245 EISMEALE 252


>gi|242035965|ref|XP_002465377.1| hypothetical protein SORBIDRAFT_01g037525 [Sorghum bicolor]
 gi|241919231|gb|EER92375.1| hypothetical protein SORBIDRAFT_01g037525 [Sorghum bicolor]
          Length = 932

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 49/254 (19%), Positives = 85/254 (33%), Gaps = 38/254 (14%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI   K R  +   ++   GPPG+GKT++ + +AR L   F   S
Sbjct: 388 EDHYGLADVKERILEFIAVGKLRGSSQGKIICLSGPPGVGKTSIGRSIARALNRKFYRFS 447

Query: 87  GPVIAKAGDLAALLTNLED----------------RDVLFIDEIHRLSI--------IVE 122
              +    ++                           ++ IDEI +L           + 
Sbjct: 448 VGGLTDVAEIKGHRRTYVGAMPGKIVQCLKSVGTSNPLVLIDEIDKLGKGHSGDPASALL 507

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD  +        V ++LS+   +     + ++ +PL DR  I     +
Sbjct: 508 ELLDPEQNANFLDHYL-------DVPVDLSKVLFVCTANVIEMIPSPLLDRMEIIAIAGY 560

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH-AKTI 241
              E +       A+      T EA      +   T      L+      A V +  K I
Sbjct: 561 ITDEKMH-----IARDYLEKNTREACGIKPEQVEVTNDALLALIENYCREAGVRNLQKQI 615

Query: 242 TREIADAALLRLAI 255
            +     AL  +  
Sbjct: 616 EKIYRKIALKLVRQ 629


>gi|254569058|ref|XP_002491639.1| ATPase of the CDC48/PAS1/SEC18 (AAA) family, forms a hexameric
           complex [Pichia pastoris GS115]
 gi|238031436|emb|CAY69359.1| ATPase of the CDC48/PAS1/SEC18 (AAA) family, forms a hexameric
           complex [Pichia pastoris GS115]
 gi|328351856|emb|CCA38255.1| ATPase family gene 2 protein [Pichia pastoris CBS 7435]
          Length = 763

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 77/216 (35%), Gaps = 29/216 (13%)

Query: 16  DADISLLR------PR-TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFV 60
           D   S +R      P+ +  +  GQ      LK  +E     AE        A   +L  
Sbjct: 477 DIRPSAMREIFLETPKISWTDIGGQEVVKQKLKEMVELPLIAAESFQRLGVSAPKGLLLY 536

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DVLFID 112
           GPPG  KT  A+ +A E G+NF +  GP I     G+    +  +  +       ++F D
Sbjct: 537 GPPGCSKTLTAKALASESGLNFLAVKGPEIFNKYVGESERAIREVFRKARAAAPSIIFFD 596

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           EI  LS   ++       +  L  ++ E          L    ++ AT R   +   L  
Sbjct: 597 EIDALSNTRDDNNNTTASNNVLTSLLNEIDGVE----ELKGVVILGATNRPDAIDPALLR 652

Query: 173 --RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDE 206
             R    I +   +      I+    K  GL   ++
Sbjct: 653 PGRLDRHIYVPPPDAAARYQILDNSTKNFGLGGNED 688



 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 57/299 (19%), Positives = 101/299 (33%), Gaps = 43/299 (14%)

Query: 9   SRNVSQEDADISLLRPRTLEEF--TG--QVEACSNLKVFIEAAKARAEALDH-------- 56
           S  +S  D   S   P  L ++   G  Q +    LK  +     + +   +        
Sbjct: 208 STKISISDDIFSRYNPSALVDYSQIGGLQKQI-ELLKTSVSLPLHQPDLFTNFGITPPRG 266

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-----AGDLAALLTNLE--DRDV 108
           +L  GPPG GKT L + VA E   +  + +GP VI+K        +  +    E     +
Sbjct: 267 ILLHGPPGTGKTMLLRAVANEENAHVLTINGPSVISKYLGETESTIRDMFREAELYQPSI 326

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +FIDEI  L+           E   +  ++           N  R  L+ AT R   +  
Sbjct: 327 IFIDEIDALAPSRNSDDAGETESRIVASLLTL----MDGMGNAGRVVLVGATNRPNAIDQ 382

Query: 169 PLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
            L+   RF   + +   ++     I+    +   +   + +  +I   +  T    G  L
Sbjct: 383 ALRRPGRFDQEVEVGIPDVAARYDILN--LQFKKMRRHEISEQDIKEIASKTHGYVGADL 440

Query: 227 RRVRDFAEVAHAKTITREIADAALLRLAIDKM--GFDQLDLRYL----TMIARNFGGGP 279
                   VA  +    +     L    +D +  G   ++   L    + +   F   P
Sbjct: 441 --------VALCRETVMKAIKRGLDFHNLDSLKIGLSDVENAMLDIRPSAMREIFLETP 491


>gi|258510218|ref|YP_003183652.1| ATP-dependent metalloprotease FtsH [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257476944|gb|ACV57263.1| ATP-dependent metalloprotease FtsH [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 602

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 65/246 (26%), Positives = 94/246 (38%), Gaps = 23/246 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAK--ARAEAL-----DHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  E  + L+  +E  K   R  AL       VL VGPPG GKT LA+ VA E 
Sbjct: 156 TFADVAGADEEKAELEEIVEFLKDPKRFTALGARIPKGVLLVGPPGTGKTLLARAVAGEA 215

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG       V   A  +  L    +     ++FIDEI  +       L    +
Sbjct: 216 GVPFFSISGSDFVEMFVGVGASRVRDLFDQAKKNSPCIIFIDEIDAVGRHRGAGLGGGHD 275

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E     + +       +IAAT R  +L   L    RF   I +N  +++
Sbjct: 276 EREQTLNQLLVEMDGFSANEG----IVIIAATNRPDILDPALLRPGRFDRQIVVNRPDVK 331

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++  A+   LA               T      +L      A     K IT    
Sbjct: 332 GREEILRVHARNKPLAPDVNLEIIAKRTPGFTGADLENVLNEAALLAARKKQKEITNADI 391

Query: 247 DAALLR 252
           D A+ R
Sbjct: 392 DEAIDR 397


>gi|219851454|ref|YP_002465886.1| AAA family ATPase, CDC48 subfamily [Methanosphaerula palustris
           E1-9c]
 gi|219545713|gb|ACL16163.1| AAA family ATPase, CDC48 subfamily [Methanosphaerula palustris
           E1-9c]
          Length = 806

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 8/84 (9%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLT 101
           K   +    VL  GPPG GKT +A+ VA E+  +F + SGP I         G+L  +  
Sbjct: 215 KLGIQPPKGVLLYGPPGTGKTLIAKAVANEVDAHFITLSGPEIISKYYGESEGNLRQVFE 274

Query: 102 NLEDR--DVLFIDEIHRLSIIVEE 123
             +     ++FIDEI  ++   E+
Sbjct: 275 EAQQNAPTIIFIDEIDSIAPKRED 298



 Score = 47.4 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/182 (21%), Positives = 61/182 (33%), Gaps = 19/182 (10%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI---------AKAGDLAA 98
           K    A   +L  GPPG GKT LA+ VA E   NF S  GP +             D+  
Sbjct: 487 KLETSAPKGILLFGPPGTGKTMLAKAVANESQCNFISVKGPELLSKWVGESEKGVRDIFR 546

Query: 99  LLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIA 158
                    ++F DEI  L                 + +V +  +       L    ++A
Sbjct: 547 KARQAAP-SIIFFDEIDALVPSRGSY---TGSSHVTESVVSQILTELDGLEELKNVVVLA 602

Query: 159 ATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTI----VQRGAKLTGLAVTDEAACEIA 212
           AT R  ++   L    R    + +   + E  K I    ++    +    V  +   E  
Sbjct: 603 ATNRPDMIDKALMRPGRLDRHLYVPPPDREGRKKIFEVYLRHAEAILSGDVKIDDLVEKT 662

Query: 213 MR 214
            R
Sbjct: 663 ER 664


>gi|71892083|ref|YP_277813.1| DNA polymerase III, tau and gamma subunits [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
 gi|71796189|gb|AAZ40940.1| DNA polymerase III, tau and gamma subunits [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
          Length = 698

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 41/237 (17%), Positives = 67/237 (28%), Gaps = 53/237 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN- 81
           RP+   +  GQ          I    +  +     +  G  G+GKTT+A++ A+ L    
Sbjct: 11  RPKKFSDIVGQEHII----QAITHTFSLNKIHHAYILSGTRGVGKTTIARLFAKGLNCEQ 66

Query: 82  -----------------------FRSTSGPVIAKAGDLAALLTNLE------DRDVLFID 112
                                            K  D    L N++         V  ID
Sbjct: 67  GTTYTMCGQCNNCKDIELGCFIDLIEIDAASRTKVEDTREFLDNVQYMPSRGRFKVYLID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS      L   +E+                    +    I  TT    L   +  
Sbjct: 127 EVHMLSRHSFNALLKTLEE------------------PPTHVKFILVTTEYQKLPETILS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           R  +   L    I  +   +        + +   A   +A  S+G+ R A  L  + 
Sbjct: 169 RC-LQFYLKPLNISQIINQLTYIFHKENINIETSALESLAYASKGSMRDALSLAEQA 224


>gi|218562769|ref|YP_002344548.1| DNA polymerase III subunits gamma and tau [Campylobacter jejuni
           subsp. jejuni NCTC 11168]
 gi|112360475|emb|CAL35272.1| putative DNA polymerase III subunit gamma [Campylobacter jejuni
           subsp. jejuni NCTC 11168]
          Length = 509

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 52/235 (22%), Positives = 86/235 (36%), Gaps = 27/235 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     RP+T +E  GQ     +LK  +         L H  LF G  G GKT+ A++ +
Sbjct: 4   ALAIKYRPKTFDELIGQKTVSVSLKYAL-----NHNRLAHAYLFSGLRGSGKTSSARIFS 58

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHR-----LSIIVEEILY-P 127
           R L        GP     G     L  LE +  D++ +D         +  ++E+  Y P
Sbjct: 59  RALVCE----QGPSDTPCGTCKHCLAALEGKHIDIIEMDAASNRGLEDIQALIEQTKYTP 114

Query: 128 AMEDFQLDLMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +M  F++ ++               ++++   S    I ATT    L   +  R      
Sbjct: 115 SMARFKIFIIDEVHMLTPQAANALLKTLEEPPSYVKFILATTDPLKLPATVLSRTQHFRF 174

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
               + E L   ++       +   +EA   IA    G+ R    LL +   F +
Sbjct: 175 KQIPQSEIL-NHLKEILLKENVKFEEEALKFIARSGNGSLRDTLTLLDQAIIFCQ 228


>gi|86150298|ref|ZP_01068524.1| DNA polymerase III, gamma/tau subunits [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|85839123|gb|EAQ56386.1| DNA polymerase III, gamma/tau subunits [Campylobacter jejuni subsp.
           jejuni CF93-6]
          Length = 509

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 52/235 (22%), Positives = 86/235 (36%), Gaps = 27/235 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     RP+T +E  GQ     +LK  +         L H  LF G  G GKT+ A++ +
Sbjct: 4   ALAIKYRPKTFDELIGQKTVSVSLKYAL-----NHNRLAHAYLFSGLRGSGKTSSARIFS 58

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHR-----LSIIVEEILY-P 127
           R L        GP     G     L  LE +  D++ +D         +  ++E+  Y P
Sbjct: 59  RALVCE----QGPSDTPCGTCKHCLAALEGKHIDIIEMDAASNRGLEDIQALIEQTKYTP 114

Query: 128 AMEDFQLDLMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +M  F++ ++               ++++   S    I ATT    L   +  R      
Sbjct: 115 SMARFKIFIIDEVHMLTPQAANALLKTLEEPPSYVKFILATTDPLKLPATVLSRTQHFRF 174

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
               + E L   ++       +   +EA   IA    G+ R    LL +   F +
Sbjct: 175 KQIPQSEIL-NHLKEILLKENVKFEEEALKFIARSGNGSLRDTLTLLDQAIIFCQ 228


>gi|313245577|emb|CBY40264.1| unnamed protein product [Oikopleura dioica]
          Length = 1210

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 70/177 (39%), Gaps = 26/177 (14%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVN------FRSTSGPVIAK-AGDLAALL 100
           K   +    VLF GPPG GKT +A+ +A E   +      F      V++K  G+    L
Sbjct: 238 KFSVQPPRGVLFYGPPGTGKTLMARALANECSQDGKKLAFFMRKGSDVLSKWVGESERQL 297

Query: 101 TNLEDR------DVLFIDEIHRLSIIV---EEILYPAMEDFQLDLMVGEGPSARSVKINL 151
             L D+       ++F DEI  L+ +    ++ ++ ++    L LM G       + I  
Sbjct: 298 RLLFDQAYRMRPSIIFFDEIDGLAPVRSSKQDHIHSSIVSTLLALMDGLDSRGEVIVI-- 355

Query: 152 SRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDE 206
                  AT RV  +   L+   RF   I       E    I++  AK   +   +E
Sbjct: 356 ------GATNRVDAIDPALRRPGRFDREILFPLPSAEARMQILKIHAKKWEIKPNEE 406


>gi|310792115|gb|EFQ27642.1| ATP-dependent protease La [Glomerella graminicola M1.001]
          Length = 1112

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 52/261 (19%), Positives = 95/261 (36%), Gaps = 38/261 (14%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI   K R      ++ FVGPPG+GKT++ + +AR L   +   S
Sbjct: 564 EDHYGLKDVKDRILEFIAVGKLRGTVEGKIICFVGPPGVGKTSIGKSIARALNRQYYRFS 623

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDEI ++    +        
Sbjct: 624 VGGLTDVAEIKGHRRTYVGALPGRIIQALKKCQTENPLILIDEIDKIGRGYQGDPSSALL 683

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V ++LS+   +        +  PL DR  + I+L+ 
Sbjct: 684 ELLDPEQNSSFLD-------HYMDVPVDLSKVLFVCTANMTDTIPRPLLDRMEL-IQLSG 735

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  ++ K I    A         EAA       + +      L++     + V + K   
Sbjct: 736 YVADEKKAI----ADKYLAPAAKEAAGLANADVQLSEEAIEELIKSYARESGVRNLKKQI 791

Query: 243 REIADAALLRLAIDKMGFDQL 263
            ++   + L++  D +G D L
Sbjct: 792 EKVYRKSALKIVQD-LGEDVL 811


>gi|307566054|ref|ZP_07628512.1| endopeptidase La [Prevotella amnii CRIS 21A-A]
 gi|307345242|gb|EFN90621.1| endopeptidase La [Prevotella amnii CRIS 21A-A]
          Length = 811

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 57/296 (19%), Positives = 111/296 (37%), Gaps = 40/296 (13%)

Query: 11  NVSQEDADISLLRPRTLE-EFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKT 68
             +++D D+   + R L+ +  G  +    +  +I   + R      +L   GPPG+GKT
Sbjct: 322 EFTEDDLDLKRAK-RILDKDHYGMEKVKERILEYIAVLRLRGNLKSPILCLYGPPGVGKT 380

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLA------------ALLTNLED----RDVLFID 112
           +L + VA  L   +   S   +    ++              ++ +L+       V  +D
Sbjct: 381 SLGKSVANALKRKYVRISLGGVHDESEIRGHRKTYIGAMPGRIIKSLQKSGSSNPVFILD 440

Query: 113 EIHRL---------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
           EI ++         S  + E+L P   +   D  +           +LS+   IA    +
Sbjct: 441 EIDKVTQNTLNGDPSSALLEVLDPEQNNAFHDNYLDLDY-------DLSKVLFIATANDL 493

Query: 164 GLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAG 223
             +  PL DR  I I ++ Y  E+   I +R   L    + +    +++++ + +  I  
Sbjct: 494 NTIPRPLLDRMEI-INVSGYITEEKVEIAKR--HLIPKELNNTGLDKLSVQPKFSKAILE 550

Query: 224 RLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGP 279
           +++      + V   +    +I      + AID     Q D   L  I    G  P
Sbjct: 551 KIIEDYTRESGVRQLEKQINKILRKIAYKQAIDDNA--QYDKITLPKIEELIGKAP 604


>gi|218883356|ref|YP_002427738.1| Cell division control protein 48, AAA family [Desulfurococcus
           kamchatkensis 1221n]
 gi|218764972|gb|ACL10371.1| Cell division control protein 48, AAA family [Desulfurococcus
           kamchatkensis 1221n]
          Length = 746

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 54/207 (26%), Positives = 83/207 (40%), Gaps = 24/207 (11%)

Query: 28  EEFTGQVEACSNLKVFIE--------AAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           ++  G  +    L+  IE          K   E    +L  GPPG GKT LA+ VA E G
Sbjct: 464 DDIGGLEDVKQELREAIEWPMKYPHVFEKMGLEPPKGILLFGPPGTGKTLLAKAVATESG 523

Query: 80  VNFRSTSGP-VIAK-AGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMED 131
            NF +  GP V++K  G+    +  +  R       V+F DEI  ++      +  +   
Sbjct: 524 ANFITVRGPEVLSKWVGESEKAIRQIFRRARMVAPAVVFFDEIDSIA-----GIRGSDPS 578

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
             +D +V +  +       L R   IAAT R  LL   L    RF   + +   +     
Sbjct: 579 GVIDRIVNQLLTELDGIQPLRRVVTIAATNRPDLLDPALLRPGRFDRLVYVPPPDYNARL 638

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSR 216
            I +   +   LA  D +  E+A R+ 
Sbjct: 639 QIFKVHIRKLPLA-EDVSLDELARRTE 664



 Score = 52.8 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 44/188 (23%), Positives = 71/188 (37%), Gaps = 24/188 (12%)

Query: 24  PR-TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVV 74
           P+ T E+     E    ++  +E      E  +H        +L  GPPG GKT LA+ +
Sbjct: 183 PKVTWEDIGDLDEVKQKIREIVELPLKYPELFEHLGIEPPKGILLYGPPGTGKTLLAKAL 242

Query: 75  ARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILY 126
           A E+G  F + +GP I           L  +    +     V+FIDEI  ++   EE+  
Sbjct: 243 ANEIGAYFVTINGPEIMSKFYGESEERLRKIFEEAQANAPAVIFIDEIDSIAPKREEVTG 302

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
              +     L+               +  +I AT R   L   L+   RF   I +   +
Sbjct: 303 EVEKRVVAQLLT-----LMDGLKERGKVIVIGATNRPDALDPALRRPGRFDREIEIPPPD 357

Query: 185 IEDLKTIV 192
               + I+
Sbjct: 358 KRARREIL 365


>gi|158334484|ref|YP_001515656.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris
           marina MBIC11017]
 gi|158304725|gb|ABW26342.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris
           marina MBIC11017]
          Length = 629

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 53/263 (20%), Positives = 94/263 (35%), Gaps = 27/263 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  E+ + L+  +E  K+        A+    VL VGPPG GKT +A+ VA E 
Sbjct: 168 TFDDVAGVEESKTELEEIVEFLKSPQRFTEIGAKIPKGVLLVGPPGTGKTLMAKAVAGEA 227

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVE--EILYPA 128
           GV F S SG           A  +  L    + +   ++FIDE+  +             
Sbjct: 228 GVPFFSISGSEFVELFVGTGAARVRDLFEQAKKKAPCIIFIDELDAIGKSRAGGNGFVGG 287

Query: 129 MEDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
            ++ +  L  ++ E     +         ++AAT R   L   L    RF   + ++  +
Sbjct: 288 NDEREQTLNQLLTEMDGFGAGDAT---VIVLAATNRPETLDPALLRPGRFDRQVLVDRPD 344

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +     I++  AK   L    +                  L+      A    +K +  +
Sbjct: 345 LTGRLAILEIYAKKVKLGENVDLKAMATRTPGFAGADLANLVNEAALLAARRGSKVVETQ 404

Query: 245 IADAALLRLAIDKMGFDQLDLRY 267
               A+ R+     G ++     
Sbjct: 405 DFAEAIERVVA---GLEKKSRVL 424


>gi|71034003|ref|XP_766643.1| cell division protein FtsH [Theileria parva strain Muguga]
 gi|68353600|gb|EAN34360.1| cell division protein FtsH, putative [Theileria parva]
          Length = 806

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 59/247 (23%), Positives = 95/247 (38%), Gaps = 27/247 (10%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAR 76
           P   ++  G  EA  +++  ++  K         A+    +L VGPPG GKT LA+ VA 
Sbjct: 227 PVHFKDILGIDEAKEDVQEIVKFIKQPFLYKKVGAKVPKGILLVGPPGTGKTMLAKAVAT 286

Query: 77  ELGVNFRSTSGPVI------AKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPA 128
           E G+ F  TSGP          A  + AL          ++FIDEI  +        +  
Sbjct: 287 ETGIPFIYTSGPEFVEIYVGQGAQRIRALFHKARKIAPCIIFIDEIDAVGSKRASGSFSG 346

Query: 129 ME---DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183
                D  L+ ++ E              T++AAT R+  L   L    RF   + +   
Sbjct: 347 QNREHDQTLNQLLVEMDGFNVSTG----ITILAATNRLSALDRALLRPGRFDRVVHIPLP 402

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            I+  + I+Q   K            E+   S+ TP  +G  L+ + + A +   K    
Sbjct: 403 SIKGREEILQHYLKDVTYNKETIDVKEL---SKITPGYSGADLKNLINEAALITVKQDRL 459

Query: 244 EIADAAL 250
            +  + L
Sbjct: 460 MVELSDL 466


>gi|326915457|ref|XP_003204034.1| PREDICTED: spastin-like [Meleagris gallopavo]
          Length = 598

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 48/237 (20%), Positives = 85/237 (35%), Gaps = 21/237 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDHV-------LFVGPPGLGKTTLAQVVAREL 78
             ++  GQ  A   L+  +     R E    +       L  GPPG GKT LA+ VA E 
Sbjct: 322 KFDDIAGQELAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES 381

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAME 130
              F + S   +           + AL     +    ++FIDE+  L     E  + A  
Sbjct: 382 NATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLCERREGEHDASR 441

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
             + + ++       S +    R  ++ AT R   L + +  RF   + ++    E    
Sbjct: 442 RLKTEFLIEFDGVQSSGE---DRILVMGATNRPQELDDAVLRRFTKRVYVSLPNEETRLI 498

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           +++    L     +     E+A  +R T   +G  L  +   A +   + +  E   
Sbjct: 499 LLK---NLLSKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVK 552


>gi|296132947|ref|YP_003640194.1| Vesicle-fusing ATPase [Thermincola sp. JR]
 gi|296031525|gb|ADG82293.1| Vesicle-fusing ATPase [Thermincola potens JR]
          Length = 499

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 53/256 (20%), Positives = 91/256 (35%), Gaps = 27/256 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE-------ALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ  A + LK  ++  K+  +        L  +L  GPPG GKT +A+  A   
Sbjct: 65  TFDDIGGQETAINELKEALDFIKSYEKIKELGIRPLKGILLTGPPGTGKTMMAKAAATYT 124

Query: 79  GVNFRSTSGPVIAK--------------AGDLAALLTNLEDRDVLFIDEIHRL-SIIVEE 123
              F +TSG    +              A        N +   ++FIDEI  L     + 
Sbjct: 125 DAEFLATSGSEFIEMYAGVGAQRVRRLFAAAREKANKNNKSNAIIFIDEIDVLGGKRGQT 184

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLN 181
             +   +     L+V          +   R  L+AAT R+ +L   L    RF   ++++
Sbjct: 185 TSHMEYDQTLNQLLVEMDGMKTDDSV---RILLVAATNRIDMLDPALLRPGRFDRHVKVD 241

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
               E  K I+Q   +   LA   +           +      L      +A    A  I
Sbjct: 242 LPSREGRKQILQIHTRNKPLAGDVDLDELARETFGFSGAHLESLANEAAIYAFRQGASKI 301

Query: 242 TREIADAALLRLAIDK 257
           +      A+ ++ + +
Sbjct: 302 SMAHFKEAIDKVIMGE 317


>gi|292656507|ref|YP_003536404.1| cell division control protein 48 [Haloferax volcanii DS2]
 gi|291371302|gb|ADE03529.1| cell division control protein 48 [Haloferax volcanii DS2]
          Length = 743

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 51/241 (21%), Positives = 87/241 (36%), Gaps = 15/241 (6%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLED 105
           +   EA   VL  GPPG GKT +A+ VA E   NF S  GP  +    G+    +     
Sbjct: 490 RMGIEAPKGVLLYGPPGTGKTLIAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFR 549

Query: 106 R------DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA 159
           +       ++F DE+  L+      +   + +  ++ ++ E         +     +IAA
Sbjct: 550 KARQVSPTIIFFDELDALAPARGNDMGNNVSERVVNQLLTELDGLE----DAGNVMVIAA 605

Query: 160 TTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRG 217
           T R  ++   L    RF   + +   E E  + I+    + + LA  D +  EIA  + G
Sbjct: 606 TNRPDMIDPALIRSGRFDRLVLIGQPEEEGREQILDIHTQQSPLA-PDVSLREIAEITDG 664

Query: 218 TPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGG 277
                   + R      +                 +   +    +  +RY   I   F G
Sbjct: 665 YVGSDLESICREAAIEALREDSDAEEIEMRHFRKAMESVRPTITEELMRYYEDIQDQFKG 724

Query: 278 G 278
           G
Sbjct: 725 G 725



 Score = 53.9 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 45/157 (28%), Positives = 68/157 (43%), Gaps = 17/157 (10%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLT 101
           K   E    VL  GPPG GKT LA+ VA E   +F S +GP I           L  +  
Sbjct: 217 KLGIEPPQGVLLHGPPGTGKTLLARAVANETSASFFSIAGPEIISKYYGESEQQLREIFE 276

Query: 102 NLEDR--DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV-GEGPSARSVKINLSRFTLIA 158
           + ++    ++FIDE+  ++   E++           L+   +G  AR       +  +IA
Sbjct: 277 DAKEESPSIIFIDELDSIAPKREDVTGEVERRVVAQLLTMMDGLEAR------GQVIVIA 330

Query: 159 ATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQ 193
           AT RV  +   L+   RF   I +   + E  K I+Q
Sbjct: 331 ATNRVDSVDPALRRPGRFDREIEIGVPDEEGRKEILQ 367


>gi|297526098|ref|YP_003668122.1| AAA family ATPase, CDC48 subfamily [Staphylothermus hellenicus DSM
           12710]
 gi|297255014|gb|ADI31223.1| AAA family ATPase, CDC48 subfamily [Staphylothermus hellenicus DSM
           12710]
          Length = 738

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 53/244 (21%), Positives = 86/244 (35%), Gaps = 23/244 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
           + ++  G  +    L+  +E      E            +L  GPPG GKT LA+ VA E
Sbjct: 461 SWDDIGGLNDVKQELRRAVEWPMKYPEVFKRLGIKPPRGILLYGPPGTGKTLLAKAVATE 520

Query: 78  LGVNFRSTSGPVI--AKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAM 129
            G NF +  GP I     G+    +  +  +       V+F DEI  ++          +
Sbjct: 521 SGANFIAVRGPEILSKWVGESEKAIREIFRKARLYAPAVIFFDEIDAIAPARGYAFDSRV 580

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            +  +  ++ E          L+   +IAAT R  +L   L    RF   I +   ++  
Sbjct: 581 TERIVSQLLTE----MDGINRLNNVVVIAATNRPDILDPALLRPGRFDKLIYVPPPDLNG 636

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
              I++   +   LA  D    EIA  + G        L R      +     I +    
Sbjct: 637 RIEILKIHTRNMPLA-KDVDLYEIARLTEGYSGADLEALVREAAMRALKENIEINKIYMR 695

Query: 248 AALL 251
             L 
Sbjct: 696 HFLE 699



 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 58/287 (20%), Positives = 101/287 (35%), Gaps = 31/287 (10%)

Query: 24  PR-TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVV 74
           PR T E+  G       ++  +E      E            +L  GPPG GKT LA+ V
Sbjct: 185 PRVTYEDIGGMKHIVQRVRELVELPLRHPELFRRLGIEPPKGILLYGPPGTGKTLLAKAV 244

Query: 75  ARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILY 126
           A E    F + +GP I           L  +    +     ++FIDEI  ++   +E++ 
Sbjct: 245 ANEAEAYFIAINGPEIISKFYGESEQRLREIFEQAKKNAPAIIFIDEIDAIAPKRDEVMG 304

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
                     +V +  +      +     +IAAT R   L   L+   RF   I +   +
Sbjct: 305 EVERR-----VVAQLLALMDGLESRGDVIVIAATNRPNALDPALRRPGRFDREIEVPLPD 359

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            +    I+Q   +   LA   +      +    T      L++     A       + R 
Sbjct: 360 KQGRLEILQIHTRGMPLANDVDLNKLAEITHGYTGADIAALVKEAALHA-------LRRY 412

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSE 291
           + +  L    I     +++++R    +A      P G+  I   + E
Sbjct: 413 MPEIDLESETIPVEVLEKMEVRMEDFLAAYKEIVPSGLREIYVEVPE 459


>gi|17065032|gb|AAL32670.1| similar to homeobox protein [Arabidopsis thaliana]
          Length = 752

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 50/258 (19%), Positives = 89/258 (34%), Gaps = 41/258 (15%)

Query: 9   SRNVSQEDADISLLRPR---------TLEEFTGQVEACSNLKVFIEAAKARAE------- 52
           +  V+ ++     +RP          T ++     E   +L+  +     R +       
Sbjct: 493 APEVAPDNEFEKRIRPEVIPAEEINVTFKDIGALDEIKESLQELVMLPLRRPDLFTGGLL 552

Query: 53  -ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLED 105
                +L  GPPG GKT LA+ +A+E G +F + S   I          ++ AL T    
Sbjct: 553 KPCRGILLFGPPGTGKTMLAKAIAKEAGASFINVSMSTITSKWFGEDEKNVRALFTLASK 612

Query: 106 --RDVLFIDEIH-----RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIA 158
               ++F+DE+      R  +   E +     +F              +     R  ++A
Sbjct: 613 VSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFM-------SHWDGLMTKPGERILVLA 665

Query: 159 ATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGT 218
           AT R   L   +  RF   I +    +E+ + I++    L      DE      +    T
Sbjct: 666 ATNRPFDLDEAIIRRFERRIMVGLPAVENREKILR---TLLAKEKVDENLDYKELAM-MT 721

Query: 219 PRIAGRLLRRVRDFAEVA 236
               G  L+ +   A   
Sbjct: 722 EGYTGSDLKNLCTTAAYR 739


>gi|85708099|ref|ZP_01039165.1| DNA polymerase III subunits gamma and tau [Erythrobacter sp. NAP1]
 gi|85689633|gb|EAQ29636.1| DNA polymerase III subunits gamma and tau [Erythrobacter sp. NAP1]
          Length = 601

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 59/302 (19%), Positives = 98/302 (32%), Gaps = 29/302 (9%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
                         RP+T  E  GQ      L   IE    R       L  G  G+GKT
Sbjct: 57  DEGAQPYRVLARKYRPQTFSELVGQEPMVRTLANAIE----RDRLAHAFLMTGVRGVGKT 112

Query: 69  TLAQVVARELGV-NFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-------EIHRLSII 120
           + A+++A+ L         GP I   G         E R +  I+        +  +  I
Sbjct: 113 STARLIAKALNCVGPDGNGGPTIDPCGVCEFCTAIAEGRHIDVIEMDAASHTGVDDVREI 172

Query: 121 VEEILYPAMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           +E++ Y A+       ++ E             ++++   +    + ATT V  L   + 
Sbjct: 173 IEQVRYAAVSARYKIYIIDEVHMLSRNAFNALLKTLEEPPAHVKFLFATTEVEKLPVTVL 232

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R      L       L        K  G+   +EA   IA  + G+ R    +L +   
Sbjct: 233 SRTQ-RFDLRRIPASLLAEHFGNVCKAEGVEAEEEALRIIAAAAEGSARDGLSILDQAIA 291

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV-GIETISAGLS 290
            A++     +T E   + L       +       R L  +      G + G++   A   
Sbjct: 292 HADMDTEGKVTAERVRSML------GLADKSAQRRLLGTVLEGDAKGLLAGVDEQYALGV 345

Query: 291 EP 292
           EP
Sbjct: 346 EP 347


>gi|46123611|ref|XP_386359.1| hypothetical protein FG06183.1 [Gibberella zeae PH-1]
          Length = 1086

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 87/249 (34%), Gaps = 36/249 (14%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI   K R      +L FVGPPG+GKT++ + +AR L   +   S
Sbjct: 577 EDHHGLKDVKDRILEFIAVGKLRGTVEGKILCFVGPPGVGKTSIGKSIARALNREYYRFS 636

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDEI ++    +        
Sbjct: 637 VGGLTDVAEIKGHRRTYVGALPGRMIQALKKCQTENPLILIDEIDKIGRGYQGDPSSALL 696

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V ++LS+   +        +  PL DR  + I L+ 
Sbjct: 697 ELLDPEQNSSFLD-------HYMDVPVDLSKVLFVCTANMTDTIPRPLLDRMEL-ITLSG 748

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  ++   I QR       A  + A  + A  +     +   +    R+       K I 
Sbjct: 749 YVADEKMAIAQR---YLAPAAKETAGLQNADVTLSEEAVEELIKSYCRESGVRNLKKQIE 805

Query: 243 REIADAALL 251
           +    +AL 
Sbjct: 806 KVYRKSALK 814


>gi|329766718|ref|ZP_08258261.1| AAA family ATPase, CDC48 subfamily protein [Candidatus
           Nitrosoarchaeum limnia SFB1]
 gi|329136973|gb|EGG41266.1| AAA family ATPase, CDC48 subfamily protein [Candidatus
           Nitrosoarchaeum limnia SFB1]
          Length = 728

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 54/209 (25%), Positives = 82/209 (39%), Gaps = 32/209 (15%)

Query: 20  SLLR--PR-TLEEFTGQVEACSNLKVFIEAA--------KARAEALDHVLFVGPPGLGKT 68
             LR  P+ T E+  G  +    ++  IE          K   EA   VL  GPPG GKT
Sbjct: 166 ETLRGVPQVTYEDIGGLTDEIKKVREMIELPLRHPEIFEKLGIEAPKGVLLYGPPGTGKT 225

Query: 69  TLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSII 120
            LA+ VA E   +F S SGP I           L  +     ++   ++F+DEI  ++  
Sbjct: 226 LLAKAVANESQAHFISISGPEIMSKFYGESEARLREIFKEAREKAPSIIFVDEIDSIAPK 285

Query: 121 VEEILYPA---MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFG 175
            EE+       +    L LM G     + + I        AAT R   +   L+   RF 
Sbjct: 286 REEVTGEVERRVVSQMLSLMDGLEARGKVIVI--------AATNRPNAIDPALRRPGRFD 337

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVT 204
             I +   + +  K I+   ++   L+  
Sbjct: 338 REIEIKVPDKKGRKDILAIHSRNMPLSDD 366



 Score = 45.8 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 43/196 (21%), Positives = 74/196 (37%), Gaps = 22/196 (11%)

Query: 28  EEFTGQVEACSNLKVFIE--------AAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           EE  G  +    L+  +E          K   +    +L  GP G GKT LA+ VA +  
Sbjct: 450 EEVGGLEDVKRELQEAVEWPMKYPGLYDKLGHKMPRGILLHGPSGTGKTLLAKAVATQSE 509

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMED 131
            NF S  GP +           +  +          V+F DEI  ++ I       A+ +
Sbjct: 510 ANFVSVRGPELLSKWVGESERGIREIFRRARQASPCVVFFDEIDSIAPIRGAGGETAVTE 569

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
             +  ++ E     ++        ++AAT R  ++   L    RF   I++   + E  K
Sbjct: 570 RVVSQLLTELDGMENMHG----VVVLAATNRPDMIDPALLRPGRFDKIIQIPLPDKESRK 625

Query: 190 TIVQRGAKLTGLAVTD 205
            I++  A+   +  T 
Sbjct: 626 MILRINAEKIPINNTP 641


>gi|328783535|ref|XP_392892.3| PREDICTED: transitional endoplasmic reticulum ATPase TER94 isoform
           1 [Apis mellifera]
          Length = 811

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 46/242 (19%), Positives = 87/242 (35%), Gaps = 20/242 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVARE 77
           T ++  G       L+  ++      +            VLF GPPG GKT LA+ +A E
Sbjct: 472 TWDDIGGLQNVKMELQELVQYPVEHPDKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANE 531

Query: 78  LGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAM 129
              NF S  GP +     G+  A + ++ D+       VLF DE+  ++      L  A 
Sbjct: 532 CQANFISVKGPELLTMWFGESEANVRDVFDKARAAAPCVLFFDELDSIAKSRGGTLGDA- 590

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                D ++ +  +            +I AT R  ++   +    R    I +   + + 
Sbjct: 591 -GGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKS 649

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            + I +   + + +A   + +    +    +      + +R    A     +T  R   +
Sbjct: 650 REAIFRANLRKSPVAKDVDLSYIAKVTHGFSGADITEICQRACKLAIRQSIETEIRREKE 709

Query: 248 AA 249
            A
Sbjct: 710 RA 711



 Score = 56.2 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 51/266 (19%), Positives = 86/266 (32%), Gaps = 44/266 (16%)

Query: 31  TGQVEACSNLKVFIEAAKARAEALDH--------------VLFVGPPGLGKTTLAQVVAR 76
            G  +     K   +  +     L H              +L  GPPG GKT +A+ VA 
Sbjct: 198 VGYDDIGGVRKQLAQIKEMVELPLRHPSLFKVIGVKPPRGILLYGPPGTGKTLIARAVAN 257

Query: 77  ELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPA 128
           E G  F   +GP I          +L       E     ++FIDE+  ++   E+     
Sbjct: 258 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAIIFIDELDAIAPKREK----- 312

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
                   +V +  +        S   ++AAT R   +   L+   RF   I +   +  
Sbjct: 313 THGEVERRIVSQLLTLMDGMKQSSHVIVMAATNRPNSIDPALRRFGRFDKEIDIGIPDAT 372

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
               I++   K   LA  D    EIA  + G        L               +    
Sbjct: 373 GRLEILRIHTKNMKLA-DDVELEEIAAETHGHVGADLASL--------------CSEAAL 417

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIA 272
                ++ +  +  + +D   L+ +A
Sbjct: 418 QQIREKMDLIDLEEEHIDAEVLSSLA 443


>gi|327400517|ref|YP_004341356.1| Replication factor C large subunit [Archaeoglobus veneficus SNP6]
 gi|327316025|gb|AEA46641.1| Replication factor C large subunit [Archaeoglobus veneficus SNP6]
          Length = 502

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 73/231 (31%), Gaps = 34/231 (14%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
            +   RP+T+++     +    +  + +  +        +LF GPPG GKT+LA  +A  
Sbjct: 3   WVEKYRPKTIKDVVADKKVLEKVVTWAKNWEKGIVQKP-LLFAGPPGTGKTSLALAIANT 61

Query: 78  LGVN----------------FRSTSGPVIAKAGDLAALLTNLEDR-DVLFIDEIHRLSII 120
            G                       G       D    L+  + R  ++ +DE+  +   
Sbjct: 62  FGWEVVELNASDQRNWRIIYHIVGEGAFSETISDEGEFLSIRQGRLKLIILDEVDNIHKK 121

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                  A  +  L  ++ + P              I  T       +         I  
Sbjct: 122 E-----DAGGEGALIRLLKKKPR-----------QPIILTANEPYNLSAELRNLCEMITF 165

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
              ++  +  +++R     G+     A   IA  + G  R A   L+ + +
Sbjct: 166 RRLDVRRVVAVLERICAQEGIRADRRALESIARNAGGDLRAAINDLQAIAE 216


>gi|289810799|ref|ZP_06541428.1| DNA polymerase III subunits gamma and tau [Salmonella enterica
           subsp. enterica serovar Typhi str. AG3]
          Length = 140

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 40/105 (38%), Gaps = 6/105 (5%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+  G+N 
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK--GLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127
            +          D    +      D++ ID   R  +     L  
Sbjct: 65  ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLD 109


>gi|294658945|ref|XP_461277.2| DEHA2F21450p [Debaryomyces hansenii CBS767]
 gi|300681249|sp|Q6BKJ4|LONM_DEBHA RecName: Full=Lon protease homolog, mitochondrial; Flags: Precursor
 gi|202953502|emb|CAG89675.2| DEHA2F21450p [Debaryomyces hansenii]
          Length = 1079

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 51/258 (19%), Positives = 97/258 (37%), Gaps = 37/258 (14%)

Query: 32  GQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           G  +    +  FI   K   +    +L   GPPG GKT++A+ +A  L   +   +   I
Sbjct: 513 GLKDVKDRILEFISLGKVSGKVDGKILCLAGPPGTGKTSIAKSIAESLNRKYVRIAMGGI 572

Query: 91  AKAGDLA------------ALLTNLED----RDVLFIDEIHRLSIIV--------EEILY 126
               ++              +++ L+       ++ IDEI +L +           EIL 
Sbjct: 573 QDVHEVKGHRRTYVGSIPGRIISALKQAKTSNPLMLIDEIDKLDLSRGGGAASAFLEILD 632

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           P   +  +D  +        VK++LS+   +     +G +  PL+DR  I I ++ Y   
Sbjct: 633 PEQNNSFVDNYI-------DVKVDLSKVLFVCTANYLGNIPAPLRDRMEI-IDVSGYTNN 684

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +   I +R      +    + A         T     RL+ +    + + + K +   I 
Sbjct: 685 EKIEIAKRHL----IPEASKKAGLETNHVSITNETISRLIEKYCRESGLRNVKKLITRIF 740

Query: 247 DAALLRLAIDKMGFDQLD 264
             A L++  +    + LD
Sbjct: 741 SKASLKIVEEIEAKEALD 758


>gi|219363377|ref|NP_001136580.1| hypothetical protein LOC100216703 [Zea mays]
 gi|194696262|gb|ACF82215.1| unknown [Zea mays]
          Length = 362

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 77/234 (32%), Gaps = 40/234 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP++L +     +    +             L H+L  GPPG GKT+    VAR
Sbjct: 40  PWVEKYRPQSLADVAAHRDIVDTIDRL-----TNENRLPHLLLYGPPGTGKTSTILAVAR 94

Query: 77  ------------ELGVNFRSTSGPVIAKAGDLAALLT-NLEDRD---VLFIDEIHRLSII 120
                       EL  +       V  +  D A   + +   R    ++ +DE   ++  
Sbjct: 95  KLYGSQYSNMILELNASDERGIDVVRQQIQDFAGARSLSFGARPSVKLVLLDEADAMTKD 154

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            +  L   +E +            RS +  L           V  +   LQ R     R 
Sbjct: 155 AQFALRRVIEKYT-----------RSTRFAL-------ICNHVNKIIPALQSRC-TRFRF 195

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
              +   ++  +Q   K  GL+V D     +   S G  R A  +L+     ++
Sbjct: 196 APLDGSHVRERLQHIIKSEGLSVDDGGLTALVRLSNGDMRKALNILQSTHMASQ 249


>gi|168028953|ref|XP_001766991.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162681733|gb|EDQ68157.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1473

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 48/218 (22%), Positives = 76/218 (34%), Gaps = 17/218 (7%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP++ ++  GQ     +L   I   K         LF GP G GKTT A+V A  L    
Sbjct: 696 RPKSFKDMVGQTLVVKSLTTAITKGKVA----PVYLFAGPRGSGKTTCARVFAAALVCLN 751

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP-AMEDFQLDLMVGEG 141
                       + A +  N   RDV  ID      +    +L      + +  + + EG
Sbjct: 752 TEPHRRPCGLCRECATMTLN-RSRDVKEIDVSTCPDLDHMRLLLNLPSSNGRQQVFILEG 810

Query: 142 PSARSVKI----------NLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
               + ++                 I  TT +  L      R          E E +   
Sbjct: 811 CDFLNTELWTAFLKFLDDPPRNVVFILITTNLERLPLSATSRCQKYHFGKLKESEIMTR- 869

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           +Q  A+   L + + A   IA R+ G+ R A  +L ++
Sbjct: 870 LQGLAEKEHLDIDEAALFLIASRAEGSLRDAEMMLDQL 907


>gi|158334765|ref|YP_001515937.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris
           marina MBIC11017]
 gi|158305006|gb|ABW26623.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris
           marina MBIC11017]
          Length = 635

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 53/263 (20%), Positives = 94/263 (35%), Gaps = 27/263 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  E+ + L+  +E  K+        A+    VL VGPPG GKT +A+ VA E 
Sbjct: 166 TFDDVAGVEESKTELEEIVEFLKSPQRFTEIGAKIPKGVLLVGPPGTGKTLMAKAVAGEA 225

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVE--EILYPA 128
           GV F S SG           A  +  L    + +   ++FIDE+  +             
Sbjct: 226 GVPFFSISGSEFVELFVGTGAARVRDLFEQAKKKAPCIIFIDELDAIGKSRAGGNGFVGG 285

Query: 129 MEDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
            ++ +  L  ++ E     +         ++AAT R   L   L    RF   + ++  +
Sbjct: 286 NDEREQTLNQLLTEMDGFGAGDAT---VIVLAATNRPETLDPALLRPGRFDRQVLVDRPD 342

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +     I++  AK   L    +                  L+      A    +K +  +
Sbjct: 343 LTGRLAILEIYAKKVKLGENVDLKAMATRTPGFAGADLANLVNEAALLAARRGSKVVETQ 402

Query: 245 IADAALLRLAIDKMGFDQLDLRY 267
               A+ R+     G ++     
Sbjct: 403 DFAEAIERVVA---GLEKKSRVL 422


>gi|332142051|ref|YP_004427789.1| DNA polymerase III subunits gamma and tau [Alteromonas macleodii
           str. 'Deep ecotype']
 gi|327552073|gb|AEA98791.1| DNA polymerase III subunits gamma and tau [Alteromonas macleodii
           str. 'Deep ecotype']
          Length = 930

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 69/229 (30%), Gaps = 45/229 (19%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP    E  GQ    S +   ++      + L H  LF G  G+GKTT+A++ ++ L   
Sbjct: 11  RPGKFSELVGQEHVVSAISNALD-----NDRLHHAYLFTGTRGVGKTTIARIFSKSLNCE 65

Query: 82  ------------------------FRSTSGPVIAKAGDLAALLTNLEDRD------VLFI 111
                                             K  D   LL N++ +       V  I
Sbjct: 66  EGQGANPCGQCNTCKEIEQGNYVDLLEIDAASRTKVEDTRELLDNVQYKPTRGRYKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMED---FQLDLMVGEGPSARSVKINLSRFTLIAATT-----RV 163
           DE+H LS      L   +E+       L+    P    + I LSR              V
Sbjct: 126 DEVHMLSKHSFNALLKTLEEPPPHVKFLLATTDPQKLPITI-LSRCLQFNLKAMSREQIV 184

Query: 164 GLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIA 212
           G LT+ LQ             +        R A         +   ++ 
Sbjct: 185 GQLTHILQQEQLAFEAPALALLARAAQGSMRDALSLTDQAIAQGGNQVM 233


>gi|327334838|gb|EGE76549.1| putative cell division protein [Propionibacterium acnes HL097PA1]
          Length = 711

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 64/276 (23%), Positives = 96/276 (34%), Gaps = 26/276 (9%)

Query: 24  PR-TLEEFTGQVEACSNLKVFIE-----AAKARAEA--LDHVLFVGPPGLGKTTLAQVVA 75
           P+ T  +  G  EA   L+   E     A   R  A     VL  GPPG GKT LA+ VA
Sbjct: 162 PKSTFADVAGCQEAIDELQEIREFLAEPAKFQRVGAKIPKGVLLYGPPGTGKTLLARAVA 221

Query: 76  RELGVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
            E GV F S SG            ++  DL           ++FIDEI  +       + 
Sbjct: 222 GEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKEAAP-AIIFIDEIDAVGRHRGAGMG 280

Query: 127 PAMEDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNF 182
              ++ +  L  ++ E               LIAAT R  +L   L    RF   I +  
Sbjct: 281 GGHDEREQTLNQLLVEMDGFDVHGG----VILIAATNRPDVLDPALLRPGRFDRQIAVEA 336

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            +++    I++  A    +A   + A         T      +L         A+   I 
Sbjct: 337 PDLDGRLKILKVHAHGKPMADDVDMASIARRTPGMTGADLANVLNEAALLTARANLPVIG 396

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
               D A+ R+        +L   +  ++     GG
Sbjct: 397 NSELDEAIDRVIAGPQKKTRLMNEHERLVTAYHEGG 432


>gi|258591771|emb|CBE68072.1| putative Vesicle-fusing ATPase [NC10 bacterium 'Dutch sediment']
          Length = 760

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 65/267 (24%), Positives = 96/267 (35%), Gaps = 46/267 (17%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALD--------HVLFVGPPGLGKTTLAQVVARE 77
           T ++  G  +  + ++  +E      E  D         VL  GPPG GKT LAQ +A E
Sbjct: 209 TYDDIGGLGDVINEIREVVELPLKHPELFDRLGIAPPKGVLLHGPPGTGKTLLAQALANE 268

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
              +F + +GP I           L A+    ++    ++FIDE+  ++   E ++    
Sbjct: 269 AKAHFATINGPEIMGRFYGESEERLRAIFQEGQENPPAIIFIDELDSIAPKREAVMGEVE 328

Query: 130 ED---FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
                  L LM G  P    + I         AT RVG +   L+   RF   I L    
Sbjct: 329 RRVVAQLLTLMDGLTPRGNVIVI--------GATNRVGAIDLALRRPGRFDREIELRVPN 380

Query: 185 IEDLKTIVQRGAKLTGLAVT----------------DEAACEIAMRSRGTPRIAGRLLRR 228
               + I+    +   LA                  D AA           RI   L  R
Sbjct: 381 RNGRRQILTIHTRAMPLAPDVNLDWVADLTHGCVGSDLAALCREAALNALRRILPELDLR 440

Query: 229 VRDF-AEVAHAKTITREIADAALLRLA 254
           +  F AEV     +T E  + AL R+ 
Sbjct: 441 LETFPAEVLQRLVVTHEDFNQALRRIR 467



 Score = 42.0 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 46/213 (21%), Positives = 68/213 (31%), Gaps = 15/213 (7%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLED 105
           +    VL  GPPG GKT LA+ VA E   NF    G  +           +         
Sbjct: 516 KPPKGVLLYGPPGTGKTLLAKAVANEAKANFMLAKGSDLLSKWYGESEQRIREFFAKARQ 575

Query: 106 --RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
               ++F DE+  L          A E    + +V +  S       L    ++ AT R 
Sbjct: 576 VAPAIVFFDEVDALVPRRGT---AAGEPHVTERIVNQLLSELDGLEELRGVVILGATNRP 632

Query: 164 GLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRI 221
            L+   L    RF   + +   +      I+    +   LA   +    +    R T   
Sbjct: 633 DLIDPALLRPGRFDALVYVPVPDAAARHEILAVHTRHMALADDVDLKDLVRRTDRFTGAD 692

Query: 222 AGRLLRRVRDFAEVAH--AKTITREIADAALLR 252
              +  R    A      AK +T     AAL  
Sbjct: 693 LALICMRAAQLALRKDLEAKAVTHADFLAALAE 725


>gi|255932063|ref|XP_002557588.1| Pc12g07530 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211582207|emb|CAP80380.1| Pc12g07530 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 956

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 76/326 (23%), Positives = 122/326 (37%), Gaps = 44/326 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEA----------LDHVLFVGPPGLG 66
            D   +R  T  +     E    LK     +  R EA          +  +L  GPPG G
Sbjct: 638 VDAKSIR-TTFNDVHVPPETIDALKTLTSLSLIRPEAFTYGVLATDKIPGLLLYGPPGTG 696

Query: 67  KTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLS 118
           KT LA+ VARE G      SG  +          ++ A+ T  +     V+FIDE   + 
Sbjct: 697 KTLLAKAVARESGATVLEVSGSEVYDMYVGEGEKNVKAIFTLAKKLSPCVVFIDEADAIF 756

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
                          ++  + E         +LS F ++ AT R   L + +  R    +
Sbjct: 757 CSRTGASSRTSHRELINQFLREW----DGMNDLSAFIMV-ATNRPFDLDDAVLRRLPRRL 811

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
            ++    ED + +++   K   L      + ++A  +R TP  +G  L+ +   A +A  
Sbjct: 812 LVDLPTEEDREAVLRIHLKEEQLE----PSVDLAELARRTPLYSGSDLKNLSVAAALA-- 865

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
               RE  DAA      +   +   + R LT    +F     G+E ISA +SE   ++  
Sbjct: 866 --CVREENDAAAKHTGDEP--YTYPERRVLT--RAHFER---GMEEISASISEDMSSL-S 915

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAW 324
            I  +  Q G      +GR      W
Sbjct: 916 AIRKFDEQYGD----RKGRRQKSPGW 937


>gi|148926165|ref|ZP_01809850.1| putative DNA polymerase III subunit gamma [Campylobacter jejuni
           subsp. jejuni CG8486]
 gi|145845336|gb|EDK22429.1| putative DNA polymerase III subunit gamma [Campylobacter jejuni
           subsp. jejuni CG8486]
          Length = 509

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 52/235 (22%), Positives = 86/235 (36%), Gaps = 27/235 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     RP+T +E  GQ     +LK  +         L H  LF G  G GKT+ A++ +
Sbjct: 4   ALAIKYRPKTFDELIGQKTVSVSLKYAL-----NHNRLAHAYLFSGLRGSGKTSSARIFS 58

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHR-----LSIIVEEILY-P 127
           R L        GP     G     L  LE +  D++ +D         +  ++E+  Y P
Sbjct: 59  RALVCE----QGPSDTPCGTCKHCLAALEGKHIDIIEMDAASNRGLEDIQALIEQTKYTP 114

Query: 128 AMEDFQLDLMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +M  F++ ++               ++++   S    I ATT    L   +  R      
Sbjct: 115 SMARFKIFIIDEVHMLTPQAANALLKTLEEPPSYVKFILATTDPLKLPATVLSRTQHFRF 174

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
               + E L   ++       +   +EA   IA    G+ R    LL +   F +
Sbjct: 175 KQIPQSEIL-NHLKEILLKENVKFEEEALKFIARSGNGSLRDTLTLLDQAIIFCQ 228


>gi|57238032|ref|YP_179281.1| DNA polymerase III subunits gamma and tau [Campylobacter jejuni
           RM1221]
 gi|57166836|gb|AAW35615.1| DNA polymerase III, gamma/tau subunits [Campylobacter jejuni
           RM1221]
 gi|315058589|gb|ADT72918.1| DNA polymerase III subunits gamma/ tau [Campylobacter jejuni subsp.
           jejuni S3]
          Length = 509

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 52/235 (22%), Positives = 86/235 (36%), Gaps = 27/235 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     RP+T +E  GQ     +LK  +         L H  LF G  G GKT+ A++ +
Sbjct: 4   ALAIKYRPKTFDELIGQKTVSVSLKYAL-----NHNRLAHAYLFSGLRGSGKTSSARIFS 58

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHR-----LSIIVEEILY-P 127
           R L        GP     G     L  LE +  D++ +D         +  ++E+  Y P
Sbjct: 59  RALVCE----QGPSDTPCGTCKHCLAALEGKHIDIIEMDAASNRGLEDIQALIEQTKYTP 114

Query: 128 AMEDFQLDLMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +M  F++ ++               ++++   S    I ATT    L   +  R      
Sbjct: 115 SMARFKIFIIDEVHMLTPQAANALLKTLEEPPSYVKFILATTDPLKLPATVLSRTQHFRF 174

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
               + E L   ++       +   +EA   IA    G+ R    LL +   F +
Sbjct: 175 KQIPQSEIL-NHLKEILLKENVKFEEEALKFIARSGNGSLRDTLTLLDQAIIFCQ 228


>gi|330835721|ref|YP_004410449.1| AAA family ATPase, CDC48 subfamily protein [Metallosphaera cuprina
           Ar-4]
 gi|329567860|gb|AEB95965.1| AAA family ATPase, CDC48 subfamily protein [Metallosphaera cuprina
           Ar-4]
          Length = 768

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 52/238 (21%), Positives = 84/238 (35%), Gaps = 25/238 (10%)

Query: 16  DADISLLR-PR-TLEEFTGQVEACSNLKVFIEA--------AKARAEALDHVLFVGPPGL 65
           D  I   R PR T E+  G       ++  +E          +   E    ++  GPPG+
Sbjct: 177 DKPIEQTRYPRVTYEDIGGMKNVIQKIRELVELPLRHPELFKRLGIEPPKGIMLYGPPGV 236

Query: 66  GKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRL 117
           GKT LA+ VA E    F S +GP I           L  +  + +     ++FIDE+  +
Sbjct: 237 GKTLLAKAVANETESYFTSINGPEIMSKFYGESEQRLREIFEDAKKHAPAIIFIDEVDAI 296

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFG 175
           +   +E +          L+            N     +IAAT R   +   L+   RF 
Sbjct: 297 APKRDEAIGEVERRVVAQLLT-----LMDGLENRGNVIVIAATNRPNAVDPALRRPGRFD 351

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
             I +   + +    I+Q   +   L+   E      +    T      L+R     A
Sbjct: 352 REIEIPLPDKQGRLEILQIHTRNMPLSKDVELEKLADISHGYTGADLSALVREAAMNA 409



 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 57/262 (21%), Positives = 99/262 (37%), Gaps = 28/262 (10%)

Query: 28  EEFTGQVEACSNLKVFIEAAK--------ARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           ++  G  +    L+   E           A  E    +L  GPPG GKT LA+ VA E G
Sbjct: 464 DDIGGLGDIKEELREVAEYPLKFPDYYETAGVEPPKGILLFGPPGTGKTMLAKAVATESG 523

Query: 80  VNFRSTSGP-VIAK-AGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMED 131
            NF +  GP V++K  G+    +  +  +       V+F DEI  ++ +       + + 
Sbjct: 524 ANFIAVRGPEVLSKWVGESERAIREIFRKARMYAPSVIFFDEIDAVAPMR----GISSDS 579

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
              + +V +  +      NL    ++AAT R  +L   L    RF   + +   +     
Sbjct: 580 GVTERLVNQLLAEMDGIENLDNVVIVAATNRPDILDPALLRPGRFEKLVYVPPPDKNARY 639

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            I++   K   L+  +    E+A R   T    G  L  +   A +   +   RE  +  
Sbjct: 640 DILRVHTKKVALS-DEVNLEELAER---TEGYTGADLAALVREAAMRAIREGMRECVNKV 695

Query: 250 LLRLAIDKMGFDQLDLRYLTMI 271
             + A +    D  D +    +
Sbjct: 696 STQCAQNDR--DCRDAKMRDCM 715


>gi|308272185|emb|CBX28792.1| Cell division cycle protein 48 homolog AF_1297 [uncultured
           Desulfobacterium sp.]
          Length = 711

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 48/203 (23%), Positives = 75/203 (36%), Gaps = 31/203 (15%)

Query: 25  RTL--EEFTGQVEACSNLKVFIEAA-----------KARAEALDHVLFVGPPGLGKTTLA 71
           RTL  E+  G     S L+   E             +   +A   VL  GPPG GKT +A
Sbjct: 176 RTLAYEDIGG---LKSQLQRIREMIELPLRYPEVFERLGIDAPKGVLLYGPPGCGKTLIA 232

Query: 72  QVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEE 123
           + +A E   NF S SGP I           L  +      +   +LF+DEI  ++   E 
Sbjct: 233 RAIAHETEANFFSISGPEIIHKFYGESEAHLRKIFEEATRKGPSILFLDEIDAIAPRREN 292

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLN 181
           ++    +      +V +  +            +IAAT     L   L+   RF   I + 
Sbjct: 293 VVGDVEKR-----VVAQLLALMDGLNKRQNVIVIAATNIPNALDPALRRPGRFDREIVIP 347

Query: 182 FYEIEDLKTIVQRGAKLTGLAVT 204
             +      I++  ++   LA  
Sbjct: 348 IPDRRGRLEILEIHSRGMPLAKD 370



 Score = 43.5 bits (101), Expect = 0.048,   Method: Composition-based stats.
 Identities = 43/212 (20%), Positives = 75/212 (35%), Gaps = 15/212 (7%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLT 101
           K        +L VGPPG GKT +A+ +A E  VNF S  GP +           +  +  
Sbjct: 482 KGGVTPPKGILLVGPPGCGKTMMAKAIATESHVNFISIKGPALMSKWVGESEKGVREIFH 541

Query: 102 NLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN-LSRFTLIA 158
                   ++F DEI  L             D  +   +     A    I+ L    ++ 
Sbjct: 542 KARQAAPCIIFFDEIDSLVPTRS----AGASDSHVSERILSQFLAEFDGIDELRGVLVLG 597

Query: 159 ATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSR 216
           AT R+ +L   +    RF   + +   +  D + I     +   +A   ++A        
Sbjct: 598 ATNRLDMLDAAVLRPGRFDDIVEMMMPDQRDREAIFAVHLRQKPVAKGVQSAALAEKTEG 657

Query: 217 GTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
            +      ++R+    A     KT+ +  A+ 
Sbjct: 658 FSGADIAAVVRKAAMTAVRRAVKTLEKAEAEE 689


>gi|299744108|ref|XP_001840883.2| AAA family ATPase [Coprinopsis cinerea okayama7#130]
 gi|298405968|gb|EAU80936.2| AAA family ATPase [Coprinopsis cinerea okayama7#130]
          Length = 789

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 57/326 (17%), Positives = 108/326 (33%), Gaps = 42/326 (12%)

Query: 32  GQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARELGVNFR 83
           G  +    ++  +E    R +   +        +L  GPPG GKT LA+ +A     +  
Sbjct: 250 GLSKQIEEIRDLLEIPLTRPDLFKYFGLKPPRGILLHGPPGTGKTHLARAIASSTQSSVL 309

Query: 84  STSGPVIAKA------GDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQL- 134
             +GP ++ A        L  +      +   ++ +DE+  L    E+     +E   + 
Sbjct: 310 VINGPELSSAYHGETESKLREVFKEAHAKSPCIVVLDEVDALVPRREDGAGGEVEKRVVA 369

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIV 192
            L+            +  +  ++A T R   +   L+   RF   I +   + E   +I+
Sbjct: 370 TLLTILDGMGGDDDDSRGKVVVVATTNRPNAIDPALRRPGRFDREIEIGIPDAEARLSIL 429

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
                 T   ++      +A R+ G     G  L  V   A     K    +   +   +
Sbjct: 430 NVLLAKTPHNISQSQLHSLASRAHG---YVGADLSAVVREAGTIAIKRWVSQRPTSTSSK 486

Query: 253 LAIDKMGFDQLDLRY----LTMIARNFGGGP-VGIETISAGLSEPRDAIEDLIEPYMIQQ 307
                +    LD        + +   F   P V    I  G +E    + + +E  ++  
Sbjct: 487 DEGLILDIADLDAALPMVRPSAMRSLFVDTPAVRYSEI-GGQAEVIQKLREAVEWPLLH- 544

Query: 308 GFIQRTPRGRLLMPIAWQHLGIDIPH 333
                        P A+Q LG+  P 
Sbjct: 545 -------------PEAFQRLGVKPPK 557



 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 55/211 (26%), Positives = 79/211 (37%), Gaps = 39/211 (18%)

Query: 16  DADISLLRP---RTL---------EEFTGQVEACSNLKVFIEAAKARAEAL--------D 55
           DA + ++RP   R+L          E  GQ E    L+  +E      EA          
Sbjct: 498 DAALPMVRPSAMRSLFVDTPAVRYSEIGGQAEVIQKLREAVEWPLLHPEAFQRLGVKPPK 557

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------D 107
            VL  GPPG  KT LA+  A E GVNF +  GP +     G+    +  +  +       
Sbjct: 558 GVLLYGPPGCSKTVLARACACESGVNFVAVKGPELLNKFVGESERAVREVFRKARAASPS 617

Query: 108 VLFIDEIHRL--SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
           ++F DEI  L  S    E    A  +  L  ++ E          L   T++AAT R   
Sbjct: 618 IIFFDEIDALAVSRSASEKDSGASHEGVLTSLLNE----MDGVQELVGVTVVAATNRPEA 673

Query: 166 LTNPL-----QDRFGIPIRLNFYEIEDLKTI 191
           L + L      DR       +    E++  I
Sbjct: 674 LDSALMRPGRLDRILYVGPPDLAGREEIFKI 704


>gi|298290429|ref|YP_003692368.1| ATP-dependent protease La [Starkeya novella DSM 506]
 gi|296926940|gb|ADH87749.1| ATP-dependent protease La [Starkeya novella DSM 506]
          Length = 813

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 61/305 (20%), Positives = 104/305 (34%), Gaps = 66/305 (21%)

Query: 49  ARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAAL--------- 99
           A       + F GPPG+GKT+L Q +AR +G  F   S   +    ++            
Sbjct: 369 APGGKAPILCFAGPPGVGKTSLGQSIARAMGRKFVRVSLGGVHDEAEIRGHRRTYVGALP 428

Query: 100 ------LTNLEDRD-VLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSA 144
                 +     RD V+ +DEI ++   ++        E+L P       D  +G     
Sbjct: 429 GNIIQGIRKAGTRDCVMMLDEIDKMGSGIQGDPSAAMLEVLDPEQNGTFRDNYLG----- 483

Query: 145 RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVT 204
             V  +LSR   IA    +  +  PL+DR  I     + + E L  I +R          
Sbjct: 484 --VPFDLSRVVFIATANMLDTIPGPLRDRMEIIQLTGYTDTEKL-QIAKR---------- 530

Query: 205 DEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLD 264
                               L+RR  +   V   +    + A  A++R    + G   L+
Sbjct: 531 -------------------YLVRRQLEANGVKPEQVEVDDEALKAIIRAYTREAGVRNLE 571

Query: 265 LRYLTMIARNFGGGPVGIETISAGLS-EPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIA 323
                 +        VGI   S   +    D + +++ P + +     R     +   +A
Sbjct: 572 REVGRAVRHV----AVGIAEGSVSHARISVDTLPEMLGPPIFEDEVALRVSVPGVATGLA 627

Query: 324 WQHLG 328
           W  +G
Sbjct: 628 WTPVG 632


>gi|262272122|gb|ACY40036.1| AT24528p [Drosophila melanogaster]
          Length = 829

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 84/257 (32%), Gaps = 28/257 (10%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVAR 76
            T  +  G       L+  ++      +            VLF GPPG GKT LA+ +A 
Sbjct: 499 TTWTDIGGLESVKKELQELVQYPVEHPDKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIAN 558

Query: 77  ELGVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127
           E   NF S  GP +         A   D+     +     VLF DE+  ++      +  
Sbjct: 559 ECQANFISVKGPELLTMWFGESEANVRDIFDKARSAAP-CVLFFDELDSIAKARGGNVGD 617

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           A      D ++ +  +            +I AT R  ++   +    R    I +   + 
Sbjct: 618 A--GGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDD 675

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA------EVAHAK 239
           +  + I++   + + LA   +      +    +      + +R    A           +
Sbjct: 676 KSREAILKANLRKSPLAKEVDLTYIAKVTQGFSGADLTEICQRACKLAIRQAIEAEIRRE 735

Query: 240 TITREIADAALLRLAID 256
               E  ++A+     D
Sbjct: 736 KERAENQNSAMDMDEDD 752



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 50/263 (19%), Positives = 88/263 (33%), Gaps = 38/263 (14%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARA--------EALDHVLFVGPPGLGKTTLAQVVARELG 79
           ++  G  +  + +K  +E              +    +L  GPPG GKT +A+ VA E G
Sbjct: 229 DDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVANETG 288

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMED 131
             F   +GP I          +L       E     ++FIDEI  ++   ++        
Sbjct: 289 AFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAIIFIDEIDAIAPKRDKTHGEVERR 348

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
               L+       +S     S   ++AAT R   +   L+   RF   I +   +     
Sbjct: 349 IVSQLLTLMDGMKKS-----SHLIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRL 403

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            +++   K   L   D    +IA  S G        L               +       
Sbjct: 404 EVLRIHTKNMKLH-DDVDLEQIAAESHGHVGADLASL--------------CSEAALQQI 448

Query: 250 LLRLAIDKMGFDQLDLRYLTMIA 272
             ++ +  +  D++D   L  +A
Sbjct: 449 REKMDLIDLEDDKIDAEVLASLA 471


>gi|161076486|ref|NP_001097249.1| TER94, isoform C [Drosophila melanogaster]
 gi|157400263|gb|ABV53745.1| TER94, isoform C [Drosophila melanogaster]
          Length = 826

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 84/257 (32%), Gaps = 28/257 (10%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVAR 76
            T  +  G       L+  ++      +            VLF GPPG GKT LA+ +A 
Sbjct: 496 TTWTDIGGLESVKKELQELVQYPVEHPDKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIAN 555

Query: 77  ELGVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127
           E   NF S  GP +         A   D+     +     VLF DE+  ++      +  
Sbjct: 556 ECQANFISVKGPELLTMWFGESEANVRDIFDKARSAAP-CVLFFDELDSIAKARGGNVGD 614

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           A      D ++ +  +            +I AT R  ++   +    R    I +   + 
Sbjct: 615 A--GGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDD 672

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA------EVAHAK 239
           +  + I++   + + LA   +      +    +      + +R    A           +
Sbjct: 673 KSREAILKANLRKSPLAKEVDLTYIAKVTQGFSGADLTEICQRACKLAIRQAIEAEIRRE 732

Query: 240 TITREIADAALLRLAID 256
               E  ++A+     D
Sbjct: 733 KERAENQNSAMDMDEDD 749



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 50/263 (19%), Positives = 88/263 (33%), Gaps = 38/263 (14%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARA--------EALDHVLFVGPPGLGKTTLAQVVARELG 79
           ++  G  +  + +K  +E              +    +L  GPPG GKT +A+ VA E G
Sbjct: 226 DDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVANETG 285

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMED 131
             F   +GP I          +L       E     ++FIDEI  ++   ++        
Sbjct: 286 AFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAIIFIDEIDAIAPKRDKTHGEVERR 345

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
               L+       +S     S   ++AAT R   +   L+   RF   I +   +     
Sbjct: 346 IVSQLLTLMDGMKKS-----SHLIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRL 400

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            +++   K   L   D    +IA  S G        L               +       
Sbjct: 401 EVLRIHTKNMKLH-DDVDLEQIAAESHGHVGADLASL--------------CSEAALQQI 445

Query: 250 LLRLAIDKMGFDQLDLRYLTMIA 272
             ++ +  +  D++D   L  +A
Sbjct: 446 REKMDLIDLEDDKIDAEVLASLA 468


>gi|115465047|ref|NP_001056123.1| Os05g0529600 [Oryza sativa Japonica Group]
 gi|45642717|gb|AAS72345.1| putative DNA polymerase III gamma chain [Oryza sativa Japonica
           Group]
 gi|52353403|gb|AAU43971.1| putative DNA polymerase III gamma chain [Oryza sativa Japonica
           Group]
 gi|113579674|dbj|BAF18037.1| Os05g0529600 [Oryza sativa Japonica Group]
          Length = 1023

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 84/222 (37%), Gaps = 16/222 (7%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFR 83
           P+T ++  GQ      L     A   R   L +V F GP G GKT+ A+V A+ L  +  
Sbjct: 362 PKTFKDMIGQSLVVQALS---NAILKRKIGLVYV-FYGPHGTGKTSCARVFAKALNCHSP 417

Query: 84  STSGPVIAKAG----DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
               P  + A     +L    + +E   V  ID    + I+   +L P     ++ ++  
Sbjct: 418 EHPRPCDSCASCIAHNLGKSRSLVEIGPVGNIDLDSIVDILDNVMLSPVPTQHRVFIVDD 477

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-------RFGIPIRLNFYEIEDLKTIV 192
                      +S+    A    V +L +P  D       R          E + + T +
Sbjct: 478 CNTLPPDTWSVISKVIERAPRRVVFILISPNLDLPHIIVSRCQKFFFPKLKECDIVNT-L 536

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
           Q  +   GL V  +A   IA RS G+ R A   L ++    +
Sbjct: 537 QWISTSEGLDVDRDALKLIASRSDGSLRDAEMTLDQLSLLGQ 578


>gi|325184426|emb|CCA18918.1| predicted protein putative [Albugo laibachii Nc14]
          Length = 675

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 91/247 (36%), Gaps = 32/247 (12%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAK-------ARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +   +  G  EA   L+  +E  +          +    VL  GPPG GKT LA+ +A E
Sbjct: 226 KRFSDVKGANEAKEELEEIVEFLRDPEKFTRLGGKLPKGVLLTGPPGTGKTLLARAIAGE 285

Query: 78  LGVNFRSTSGPVIA------KAGDLAALLTNLEDRD--VLFIDEIHRL---SIIVEEILY 126
             V F   SG           A  +  L    + +   ++FIDEI  +     + E+   
Sbjct: 286 ASVPFFYASGSEFEEMYVGVGARRVRDLFEAAKKKAPCIIFIDEIDAIGGTRKLKEQQAM 345

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
               +  L  M G   +            ++ AT    +L N L    RF   + +   +
Sbjct: 346 KMTLNQLLVEMDGFDQT--------KGIIVVGATNYPDVLDNALVRPGRFDRHVIVALPD 397

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +   K I++  A    LA       +I + +R TP ++G  L  + + A +  +     E
Sbjct: 398 VAGRKEILEFYAGKLPLAED----VDIDILARATPGMSGAELSNLINEAALKASMKEADE 453

Query: 245 IADAALL 251
           +   +  
Sbjct: 454 VDMESFE 460


>gi|300176326|emb|CBK23637.2| unnamed protein product [Blastocystis hominis]
          Length = 445

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 45/196 (22%), Positives = 72/196 (36%), Gaps = 24/196 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--V 108
           +LF GPPG GKT++A+++ARE G          I           L+++L    + D  +
Sbjct: 216 LLFEGPPGTGKTSIARLIARESGSILVHVPLESIVDKYYGESEKRLSSILKLCGEIDDAI 275

Query: 109 LFIDEIHRLSIIVEEI------------LYPAMEDFQLDL----MVGEGPSARSVKINLS 152
           +FIDE+  L+   +              L   +E F  +       G    +   +    
Sbjct: 276 IFIDEVDSLATSRDNDQMNEVTRRLLSVLLRFLEGFNANNEEAGKNGSNGESGKRETAPK 335

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIA 212
              LI AT R   L + L  RF + +     ++E  K I    AK        + A    
Sbjct: 336 HNILICATNRKHDLDSALLSRFDVQLHFPLPDVEARKQIFACYAKQLSEEERQQLAELSE 395

Query: 213 MRSRGTPRIAGRLLRR 228
             S    R +  +  R
Sbjct: 396 GMSGRDIRDSCEIAER 411


>gi|255545124|ref|XP_002513623.1| ATP binding protein, putative [Ricinus communis]
 gi|223547531|gb|EEF49026.1| ATP binding protein, putative [Ricinus communis]
          Length = 835

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 77/227 (33%), Gaps = 37/227 (16%)

Query: 9   SRNVSQEDADISLLRPR---------TLEEFTGQVEACSNLKVFIEAAKARAEALDH--- 56
           +  V  ++     +RP          T  +     E   +L+  +     R +       
Sbjct: 495 TPEVPPDNEFEKRIRPEVIPANEIGVTFADIGAMDEIKESLQELVMLPLRRPDLFKGGLL 554

Query: 57  -----VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLED 105
                +L  GPPG GKT LA+ +A E G +F + S   I          ++ AL +    
Sbjct: 555 KPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFSLAAK 614

Query: 106 --RDVLFIDEIH-----RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIA 158
               ++F+DE+      R  I   E +     +F              +     R  ++A
Sbjct: 615 VSPTIIFVDEVDSMLGQRTRIGEHEAMRKIKNEFM-------THWDGLLTKPGERILVLA 667

Query: 159 ATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTD 205
           AT R   L   +  RF   I +    IE+ + I++           D
Sbjct: 668 ATNRPFDLDEAIIRRFERRIMVGLPSIENREMILKTLLAKEKTEDLD 714


>gi|218197144|gb|EEC79571.1| hypothetical protein OsI_20723 [Oryza sativa Indica Group]
          Length = 1079

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 84/222 (37%), Gaps = 16/222 (7%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFR 83
           P+T ++  GQ      L     A   R   L +V F GP G GKT+ A+V A+ L  +  
Sbjct: 362 PKTFKDMIGQSLVVQALS---NAILKRKIGLVYV-FYGPHGTGKTSCARVFAKALNCHSP 417

Query: 84  STSGPVIAKAG----DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
               P  + A     +L    + +E   V  ID    + I+   +L P     ++ ++  
Sbjct: 418 EHPRPCDSCASCIAHNLGKSRSLVEIGPVGNIDLDSIVDILDNVMLSPVPTQHRVFIVDD 477

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-------RFGIPIRLNFYEIEDLKTIV 192
                      +S+    A    V +L +P  D       R          E + + T +
Sbjct: 478 CNTLPPDTWSVISKVIERAPRRVVFILISPNLDLPHIIVSRCQKFFFPKLKECDIVNT-L 536

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
           Q  +   GL V  +A   IA RS G+ R A   L ++    +
Sbjct: 537 QWISTSEGLDVDRDALKLIASRSDGSLRDAEMTLDQLSLLGQ 578


>gi|4325041|gb|AAD17230.1| FtsH-like protein Pftf precursor [Nicotiana tabacum]
          Length = 693

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 56/274 (20%), Positives = 95/274 (34%), Gaps = 23/274 (8%)

Query: 26  TLEEFTG-----QV--EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G     Q   E    LK         A     VL VGPPG GKT LA+ +A E 
Sbjct: 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEA 288

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG           A  +  L    ++    ++F+DEI  +       +    +
Sbjct: 289 GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGND 348

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E               ++AAT R  +L + L    RF   + ++  +I+
Sbjct: 349 EREQTLNQLLTEMDGFEGNTG----IIVVAATNRADILDSALLRPGRFDRQVSVDVPDIK 404

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
               I++  A                     +      LL      A       I  +  
Sbjct: 405 GRTEILKVHAGNKKFDSDVSLEVIAMRTPGFSGADLANLLNEAAILAGRRGKTAIASKEI 464

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV 280
           D ++ R+     G    D +  +++A +  G  +
Sbjct: 465 DDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAI 498


>gi|88596575|ref|ZP_01099812.1| DNA polymerase III, gamma/tau subunits [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|88191416|gb|EAQ95388.1| DNA polymerase III, gamma/tau subunits [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|284926383|gb|ADC28735.1| DNA polymerase III subunits gamma and tau [Campylobacter jejuni
           subsp. jejuni IA3902]
 gi|315926579|gb|EFV05960.1| DNA polymerase III, subunits gamma and tau [Campylobacter jejuni
           subsp. jejuni DFVF1099]
 gi|315928540|gb|EFV07840.1| DNA polymerase III, subunits gamma and tau [Campylobacter jejuni
           subsp. jejuni 305]
          Length = 511

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 52/235 (22%), Positives = 86/235 (36%), Gaps = 27/235 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     RP+T +E  GQ     +LK  +         L H  LF G  G GKT+ A++ +
Sbjct: 4   ALAIKYRPKTFDELIGQKTVSVSLKYAL-----NHNRLAHAYLFSGLRGSGKTSSARIFS 58

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHR-----LSIIVEEILY-P 127
           R L        GP     G     L  LE +  D++ +D         +  ++E+  Y P
Sbjct: 59  RALVCE----QGPSDTPCGTCKHCLAALEGKHIDIIEMDAASNRGLEDIQALIEQTKYTP 114

Query: 128 AMEDFQLDLMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +M  F++ ++               ++++   S    I ATT    L   +  R      
Sbjct: 115 SMARFKIFIIDEVHMLTPQAANALLKTLEEPPSYVKFILATTDPLKLPATVLSRTQHFRF 174

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
               + E L   ++       +   +EA   IA    G+ R    LL +   F +
Sbjct: 175 KQIPQSEIL-NHLKEILLKENVKFEEEALKFIARSGNGSLRDTLTLLDQAIIFCQ 228


>gi|307564452|ref|ZP_07626993.1| ATP-dependent metallopeptidase HflB [Prevotella amnii CRIS 21A-A]
 gi|307346812|gb|EFN92108.1| ATP-dependent metallopeptidase HflB [Prevotella amnii CRIS 21A-A]
          Length = 692

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 61/265 (23%), Positives = 109/265 (41%), Gaps = 33/265 (12%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ  A   ++  +E  K   +  D         L +GPPG GKT LA+ VA E 
Sbjct: 179 TFKDVAGQEGAKQEVEEIVEFLKNPGKYTDLGGKIPAGALLIGPPGTGKTLLAKAVAGEA 238

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM- 129
           GV F S SG       V   A  +  +    +++   ++FIDEI  +     +   P+M 
Sbjct: 239 GVPFFSMSGSDFVEMFVGVGASRVRDVFHQAKEKAPCIIFIDEIDAVGRARSKN--PSMG 296

Query: 130 ----EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183
                +  L+ ++ E     +     S   ++AAT RV +L   L    RF   I ++  
Sbjct: 297 GNDERENTLNALLTEMDGFGTN----SGVIVMAATNRVDMLDKALLRAGRFDRQIHVDLP 352

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           ++ + K I     K+    +  ++  ++ + SR TP  +G  +  V + A +  A+   +
Sbjct: 353 DLPERKAI----FKVHMSKIKYDSTVDVDLLSRQTPGFSGADIANVCNEAALIAARHSDK 408

Query: 244 EIADA-ALLRLAIDKMGFDQLDLRY 267
            +     L  +     G ++     
Sbjct: 409 HVGKQHFLEAIDRIVGGLEKKTKVI 433


>gi|295699009|ref|YP_003606902.1| ATPase AAA [Burkholderia sp. CCGE1002]
 gi|295438222|gb|ADG17391.1| AAA ATPase central domain protein [Burkholderia sp. CCGE1002]
          Length = 632

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 55/250 (22%), Positives = 95/250 (38%), Gaps = 24/250 (9%)

Query: 26  TLEEFTGQVEACSNL---KVFIEAAKARAE----ALDHVLFVGPPGLGKTTLAQVVAREL 78
             ++  G  EA + L   + ++   K  +     A   +L VG PG+GKT LAQ +A E 
Sbjct: 186 RFDDVIGANEAKAALADIRGYLSDPKQFSSLGVRAPCGILMVGAPGVGKTRLAQALAGEC 245

Query: 79  GVNFRSTSGPVIA------KAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYP--A 128
           G NF S +G   +          +  L          V+FIDE   L+   +    P  A
Sbjct: 246 GANFISITGSYFSAKYYGVGIQKVRHLFELARKNAPTVIFIDEADGLAKRTDTGGGPVEA 305

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
             +  ++ ++ E     S +       ++AAT     L   L+   RF   +++   + E
Sbjct: 306 ESNRIINQLLAEMDGFESNEG----VIVVAATNHPDNLDEALRRPGRFDRTVQVRLPDRE 361

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRG-TPRIAGRLLRRVRDFAEVAHAKTITREI 245
           D   I +  A+       D    ++A  + G +P     ++ +    A  A    I  + 
Sbjct: 362 DRAKIFRFYAQRLKSKAADIDYDQLARLTTGLSPATVAMVVNQAGLIARKAGDNEIAAKH 421

Query: 246 ADAALLRLAI 255
              A+    I
Sbjct: 422 FMEAIKIARI 431


>gi|313141235|ref|ZP_07803428.1| DNA polymerase III subunits gamma and tau [Helicobacter canadensis
           MIT 98-5491]
 gi|313130266|gb|EFR47883.1| DNA polymerase III subunits gamma and tau [Helicobacter canadensis
           MIT 98-5491]
          Length = 573

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 51/283 (18%), Positives = 85/283 (30%), Gaps = 55/283 (19%)

Query: 27  LEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN---- 81
            +E  GQ      L + +E+ +     L H  LF G  G GKT+ A++ AR L       
Sbjct: 3   FDELVGQESVSRTLSLALESKR-----LSHAYLFSGLRGSGKTSSARIFARALQCEKGPK 57

Query: 82  ----------------------FRSTSGPVIAKAGDLAALLT------NLEDRDVLFIDE 113
                                      G    K  D+  L+       N+    +  IDE
Sbjct: 58  AKPCGVCANCIAANPHKMRHIDIIELDGASSRKIDDIRDLIEQTKYHPNMGRYKIFIIDE 117

Query: 114 IHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLS-----RFTLIAATTRVGLL 166
           +H L+      L   +E+    +  ++      +     LS     RF  I+       L
Sbjct: 118 VHMLTKEAFNALLKTLEEPPEYVKFILATTDPLKLPATILSRTQHFRFKRISEKNIFEHL 177

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
            N L            Y+ E L  +++ G+      +T     ++ + S     I     
Sbjct: 178 KNILHKENIT------YQDEALNMLIRSGSGSLRDTLT--LLDQVIIYSNYN--ITADSC 227

Query: 227 RRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLT 269
             +           +  EI       L     GF + +   L 
Sbjct: 228 ANMLGLINPQSLNMLFEEIFKKDKESLLKHIEGFSEYECEMLL 270


>gi|224532920|ref|ZP_03673531.1| cell division protein FtsH [Borrelia burgdorferi WI91-23]
 gi|224512158|gb|EEF82548.1| cell division protein FtsH [Borrelia burgdorferi WI91-23]
          Length = 350

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 49/188 (26%), Positives = 76/188 (40%), Gaps = 31/188 (16%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ E    L+  +E  K         A+    VL VG PG GKT LA+ VA E 
Sbjct: 170 TFKDVAGQEEVKQELREVVEFLKNPKKFEKIGAKIPKGVLLVGSPGTGKTLLAKAVAGEA 229

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV+F   SG       V   A  +  L  N       ++FIDE+  +       L    +
Sbjct: 230 GVSFFHMSGSDFVEMFVGVGASRVRDLFDNARKNSPCIIFIDELDAVGRSRGAGLGGGHD 289

Query: 131 DFQLDL------MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNF 182
           + +  L      M G G     +        ++AAT R  +L + L    RF   + ++ 
Sbjct: 290 EREQTLNQLLVEMDGFGTHTNVI--------VMAATNRPDVLDSALLRPGRFDRQVTVSL 341

Query: 183 YEIEDLKT 190
            +I++ + 
Sbjct: 342 PDIKEERQ 349


>gi|205355902|ref|ZP_03222671.1| putative DNA polymerase III subunit gamma [Campylobacter jejuni
           subsp. jejuni CG8421]
 gi|205346336|gb|EDZ32970.1| putative DNA polymerase III subunit gamma [Campylobacter jejuni
           subsp. jejuni CG8421]
          Length = 509

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 52/235 (22%), Positives = 86/235 (36%), Gaps = 27/235 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     RP+T +E  GQ     +LK  +         L H  LF G  G GKT+ A++ +
Sbjct: 4   ALAIKYRPKTFDELIGQKTVSVSLKYAL-----NHNRLAHAYLFSGLRGSGKTSSARIFS 58

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHR-----LSIIVEEILY-P 127
           R L        GP     G     L  LE +  D++ +D         +  ++E+  Y P
Sbjct: 59  RALVCE----QGPSDTPCGTCKHCLAALEGKHIDIIEMDAASNRGLEDIQALIEQTKYTP 114

Query: 128 AMEDFQLDLMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +M  F++ ++               ++++   S    I ATT    L   +  R      
Sbjct: 115 SMARFKIFIIDEVHMLTPQAANALLKTLEEPPSYVKFILATTDPLKLPATVLSRTQHFRF 174

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
               + E L   ++       +   +EA   IA    G+ R    LL +   F +
Sbjct: 175 KQIPQSEIL-NHLKEILLKENVKFEEEALKFIARSGNGSLRDTLTLLDQAIIFCQ 228


>gi|222823495|ref|YP_002575069.1| DNA polymerase III, gamma and tau subunits [Campylobacter lari
           RM2100]
 gi|222538717|gb|ACM63818.1| DNA polymerase III, gamma and tau subunits [Campylobacter lari
           RM2100]
          Length = 510

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 88/234 (37%), Gaps = 25/234 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP+T +E  GQ     +LK  +E  +         LF G  G GKT+ A++ +R
Sbjct: 4   ALAIKYRPKTFDELVGQSTVSISLKYALENNRLAHAY----LFSGLRGSGKTSSARIFSR 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILY------PA 128
            L       +GP     G  +  +++L     D++ +D     S+   + L       P+
Sbjct: 60  ALVCE----NGPNANPCGKCSQCVSSLNGSNIDIIEMDAASHRSLEDIQELIEQVKYAPS 115

Query: 129 MEDFQLDLMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           M  F++ ++               ++++   S    I ATT    L   +  R       
Sbjct: 116 MARFKIFIIDEVHMLTPQAANALLKTLEEPPSYVKFILATTDPLKLPATVLSRTQHFRFK 175

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
              + E LK  ++   +   ++   EA   IA    G+ R    LL +   + +
Sbjct: 176 QISQQEILKH-LEWILEQEKISYEKEALKLIARSGNGSLRDTLTLLDQAIVYCQ 228


>gi|325088244|gb|EGC41554.1| conserved hypothetical protein [Ajellomyces capsulatus H88]
          Length = 1059

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 47/253 (18%), Positives = 89/253 (35%), Gaps = 35/253 (13%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI   K R      +L FVGPPG+GKT++ + +AR L   +   S
Sbjct: 540 EDHYGLKDVKDRILEFIAVGKLRGTVEGKILCFVGPPGVGKTSIGKSIARALNREYYRFS 599

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ ++    +        
Sbjct: 600 VGGLTDVAEIKGHRRTYVGALPGRVIQALKKCQTENPLILIDEVDKIGRGHQGDPASALL 659

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V ++LS+   +        +  PL DR  + I L+ 
Sbjct: 660 ELLDPEQNSSFLD-------HYMDVPVDLSKVLFVCTANMTDTIPRPLLDRMEM-IELSG 711

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA--KT 240
           Y  ++   I +R    +   ++     ++ +       +     R   D +E      + 
Sbjct: 712 YVADEKMAIAERYLAPSAKEMSGLKDVDVTLEKDAIEELIKSYCRESGDLSEQEKDAEEV 771

Query: 241 ITREIADAALLRL 253
             RE  + AL + 
Sbjct: 772 AVREELEPALEQE 784


>gi|307354393|ref|YP_003895444.1| AAA ATPase central domain-containing protein [Methanoplanus
           petrolearius DSM 11571]
 gi|307157626|gb|ADN37006.1| AAA ATPase central domain protein [Methanoplanus petrolearius DSM
           11571]
          Length = 477

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 47/296 (15%), Positives = 92/296 (31%), Gaps = 45/296 (15%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
            +   RP++L +  G   A   L  +    K   E    VL  G PG+GKT+    +A +
Sbjct: 14  WVEKYRPKSLGDIVGNNAAVRQLAEWAANWKIGDEP---VLIYGKPGIGKTSAVYALAAD 70

Query: 78  LGVNFRSTSGPVIAKAGDLAAL---------LTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           +       +         +  +         LT    + ++F DE   L           
Sbjct: 71  MNWEVVELNASDDRTKSVIDKIAGSTATTMSLTGASRKLIVF-DEADNLH---------G 120

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
             D      + +        I L           +  +   L+    I ++    +   +
Sbjct: 121 NADRGGARAILDTIKNSCQPIVL-------IANDIYGVAKELKSVC-IQVQFRSLQARSI 172

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              ++      G+   + A  +IA  S G  R A  +L      A+V+  +  T    + 
Sbjct: 173 VPRLKYICSSEGIKCEENALLDIADESSGDLRSAINMLHAASAGADVSEREVATSSKDER 232

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
           + +   +      + D R +               +IS  + +  +  E  IE  +
Sbjct: 233 STIFDLVGAAFKGKDDKRLM---------------SISYEIPDTPETTEQWIEDNL 273


>gi|260893890|ref|YP_003239987.1| ATP-dependent metalloprotease FtsH [Ammonifex degensii KC4]
 gi|260866031|gb|ACX53137.1| ATP-dependent metalloprotease FtsH [Ammonifex degensii KC4]
          Length = 639

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 60/253 (23%), Positives = 87/253 (34%), Gaps = 37/253 (14%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  E    L+  +E  K         A     VL  GPPG GKT +A+ VA E 
Sbjct: 157 TFDDVAGIDEVKEELQEIVEFLKNPRKFSELGARIPKGVLLYGPPGTGKTLIARAVAGEA 216

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG       V   A  +  L    +     ++FIDEI  +       L    +
Sbjct: 217 GVPFFSISGSDFVEMFVGVGAARVRDLFEQAKKNAPCIVFIDEIDAVGRQRGAGLGGGHD 276

Query: 131 DFQLDL------MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ-----DRFGIPIR 179
           + +  L      M G  P+   + I        AAT R  +L   L      DR  +   
Sbjct: 277 EREQTLNQLLVEMDGFNPNEGIIVI--------AATNRPDILDPALLRPGRFDRQIVVDM 328

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
            +    + +  +  RG  L      D  A      S         ++      A   + K
Sbjct: 329 PDINGRKAILRVHTRGKPLAEDVDLDILARRTPGFSGAD---LANVVNEAALLAARQNRK 385

Query: 240 TITREIADAALLR 252
            I  E  + A+ R
Sbjct: 386 RIHMEDFENAIER 398


>gi|156543233|ref|XP_001606546.1| PREDICTED: similar to ENSANGP00000022333 [Nasonia vitripennis]
          Length = 705

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 52/232 (22%), Positives = 90/232 (38%), Gaps = 21/232 (9%)

Query: 51  AEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLE 104
            +    VL VGPPG GKT LA+ VA E GV F   +GP          A  +  L    +
Sbjct: 321 GKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYAAGPEFDEIFVGQGARRVRDLFKAAK 380

Query: 105 DRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTR 162
           +    V+FIDEI  +       +     +  ++ ++ E       +       +I AT R
Sbjct: 381 EHAPCVIFIDEIDSVGAKRTNSVIHPHANQTINQLLSEMDGFHRNEG----VIVIGATNR 436

Query: 163 VGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRS-RGTP 219
              L   L    RF   + +   ++ + K I+     L  +   D  A  +A R+   T 
Sbjct: 437 RQDLDKALLRPGRFDSEVTVKAPDLMERKEIID--LYLGKVLTRDVNAELLAKRTIGFTG 494

Query: 220 RIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG----FDQLDLRY 267
                ++ +    A +  A+ +T +  + A  ++ +   G     D+ + R 
Sbjct: 495 ADIENMINQAALRAAIEGAEYVTMDHLERAKDKVIMGPEGKKKILDEQENRL 546


>gi|150392225|ref|YP_001322274.1| ATP-dependent metalloprotease FtsH [Alkaliphilus metalliredigens
           QYMF]
 gi|310943093|sp|A6TWP7|FTSH2_ALKMQ RecName: Full=ATP-dependent zinc metalloprotease FtsH 2
 gi|149952087|gb|ABR50615.1| ATP-dependent metalloprotease FtsH [Alkaliphilus metalliredigens
           QYMF]
          Length = 689

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 55/261 (21%), Positives = 95/261 (36%), Gaps = 26/261 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEAL-------DHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  E  + ++  ++  K   + +         +L +GPPG GKT L + VA E 
Sbjct: 163 TFDDVAGLDEEKAEVEELVDFLKNPKKYIELGARIPKGILMIGPPGTGKTYLTKAVAGEA 222

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG       V   A  +  L    +     ++FIDEI  +       L    +
Sbjct: 223 GVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKSAPCIIFIDEIDAVGRKRGAGLGGGHD 282

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E       +       ++AAT R  +L   L    RF   + +   +I+
Sbjct: 283 EREQTLNQLLVEMDGFGINEG----IIIVAATNRPDILDPALLRPGRFDRQVMVGAPDIK 338

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I+Q  AK   L                TP     L+          + K I  E  
Sbjct: 339 GREQILQVHAKGKPLDEDVNLKVLARRTPGFTPADIENLMNEAALLTARKNEKKIKMETV 398

Query: 247 DAALLRLAIDKMGFDQLDLRY 267
           + A+ ++     G ++     
Sbjct: 399 EEAITKVIA---GLEKKSRVI 416


>gi|224002178|ref|XP_002290761.1| transitional endoplasmic reticulum [Thalassiosira pseudonana
           CCMP1335]
 gi|220974183|gb|EED92513.1| transitional endoplasmic reticulum [Thalassiosira pseudonana
           CCMP1335]
          Length = 818

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 54/216 (25%), Positives = 78/216 (36%), Gaps = 23/216 (10%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR 106
               VL  GPPG GKT +A+ +A E G  F   +GP I         G+L          
Sbjct: 246 PPQGVLLYGPPGSGKTLIARAIANETGAFFYLINGPEIMSKGSGESEGNLRKAFEEAAKN 305

Query: 107 --DVLFIDEIHRLSIIVEE---ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATT 161
              ++FIDEI  ++   ++    +   +    L LM G   S  +   +L    +IAAT 
Sbjct: 306 APAIVFIDEIDCIAPKRDKINGEVERRVVSQLLTLMDGM-HSGPTRSSSLKPVLVIAATN 364

Query: 162 RVGLLTNPLQ-----DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSR 216
           R   +   L+     DR       +     ++  I  R  KL      +  A E      
Sbjct: 365 RPNAIDLSLRRFGRFDREIDLGVPDEIGRLEILHIHTRSMKLDDSVDLEALARETHGYVG 424

Query: 217 GT-----PRIAGRLLRRVRDFAEVAHAKTITREIAD 247
                     A   +R   D  +V  A TI  EI D
Sbjct: 425 ADLAELCTEGAMTCIREKLDLIDV-EAGTIDMEILD 459



 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 56/265 (21%), Positives = 92/265 (34%), Gaps = 34/265 (12%)

Query: 2   MDREGLLSRNVSQEDADISLLR---PRTL------------EEFTGQVEACSNLKVFIEA 46
           +D E L S  V+Q+   ++L R   P +L            E+  G      +L+  +  
Sbjct: 453 IDMEILDSLAVTQDHFLLALGRGHSPSSLRESHVEIPDVTWEDVGGLEGVKRDLQELVRF 512

Query: 47  A--------KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDL 96
                    K   +    VLF GPPG GKT LA+ +A E  VNF S  GP +     G  
Sbjct: 513 PVEHANKFEKFGMDPSKGVLFYGPPGCGKTLLAKAIANECQVNFISVKGPELLNMWFGQS 572

Query: 97  AALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN 150
            A + N+ D+       +LF DE+  +S         A       +M             
Sbjct: 573 EANVRNVFDKARQAAPCILFFDELDSISQKRGGHKGDAGGAPDR-IMNQLLTEMDGFAGK 631

Query: 151 LSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAA 208
                 I AT R  ++   L    R    + +   + E   +I++   + T ++   +  
Sbjct: 632 KKNVFFIGATNRPDIIDTALLRPGRLDQLMYIPMPDYESRLSILRAALRRTPISADCDLT 691

Query: 209 CEIAMRSRGTPRIAGRLLRRVRDFA 233
              A     +      + +     A
Sbjct: 692 YLAAKTEGFSGADLTEICQTACKLA 716


>gi|119774447|ref|YP_927187.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B]
 gi|119766947|gb|ABL99517.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B]
          Length = 909

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 51/175 (29%), Gaps = 36/175 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN- 81
           RP    E  GQ      L      A  +       LF G  G+GKT+LA++ A+ L    
Sbjct: 11  RPANFAEVVGQSHVLHAL----TNALGQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQ 66

Query: 82  -----------------------FRSTSGPVIAKAGDLAALLTNLEDRD------VLFID 112
                                            K  D   +L N++ R       V  ID
Sbjct: 67  GITATPCGQCSACREIAEGRFVDLIEVDAASRTKVDDTREILDNVQYRPSRGRFKVYLID 126

Query: 113 EIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
           E+H LS      L   +E+    +  ++      +     LSR            
Sbjct: 127 EVHMLSKSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKALTQP 181


>gi|259488300|tpe|CBF87639.1| TPA: AAA family ATPase/60S ribosome export protein Rix7, putative
           (AFU_orthologue; AFUA_1G09210) [Aspergillus nidulans
           FGSC A4]
          Length = 729

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 57/285 (20%), Positives = 91/285 (31%), Gaps = 23/285 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
           +L +  G  +    L   +     R +            VL  GPPG GKT +A   A E
Sbjct: 163 SLADLGGLDDVVQQLGDLVILPMTRPQVYLASNVQPPRGVLLHGPPGCGKTMIANAFAAE 222

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
           LGV F S S P I           L       +     ++FIDEI  ++   E       
Sbjct: 223 LGVPFISISAPSIVSGMSGESEKALREHFEEAKRLAPCLIFIDEIDAITPKRENSQREME 282

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
           +     L+      A   K +     ++AAT R   L   L+   RF   I +       
Sbjct: 283 KRIVAQLLTCMDDLA-LEKTDGKPVIVLAATNRPDSLDAALRRGGRFDKEINMTVPSEPV 341

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            + I+ R        V D     +A R+ G        L        +     + +  + 
Sbjct: 342 REQIL-RALTRKMRLVDDLDFKTLAKRTPGFVGADLNDLVSTAGSTAIKRYLDLLKSNSG 400

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEP 292
             +     D +      ++ L  +  +    P+G E     +S  
Sbjct: 401 EEMDIEGQDDL---SPSVKELRRLITHAKETPIGSEAEVVLVSND 442



 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 48/207 (23%), Positives = 75/207 (36%), Gaps = 15/207 (7%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD--- 107
           A   VL  GPPG GKT LA+ VA E   NF S  GP +     G+    +  +  R    
Sbjct: 502 APTGVLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESERAVRQVFVRARSS 561

Query: 108 ---VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164
              V+F DE+  L    ++ L  A       L+        S +       +IAAT R  
Sbjct: 562 IPCVIFFDELDALVPRRDDTLSEASARVVNTLLTELDGLGSSRQG----IYVIAATNRPD 617

Query: 165 LLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
           ++   +    R    + +N     +   I+Q   +   +   ++           +    
Sbjct: 618 IIDPAMLRPGRLETLLFVNLPSPLERVEILQTLVRRLPIEFNEDLRRLAEECEGFSGADL 677

Query: 223 GRLLRRVRDFAEVAHAKTITREIADAA 249
             LLRR   +  +    TI  +   AA
Sbjct: 678 TSLLRRA-GYNAIKRRDTIKFDDFVAA 703


>gi|313886703|ref|ZP_07820413.1| cell division protease FtsH [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312923865|gb|EFR34664.1| cell division protease FtsH [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 717

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 79/329 (24%), Positives = 125/329 (37%), Gaps = 60/329 (18%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  EA   L+  +E  K          +     L VGPPG GKT  A+ VA E 
Sbjct: 224 TFDDVAGLHEAKQELQEIVEFLKNPDKYTKLGGKIPKGALLVGPPGTGKTLFAKAVAGEA 283

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  L    +++   ++FIDEI  +     +    +  
Sbjct: 284 HVPFFSISGSDFVEMFVGVGASRVRDLFKQAKEKSPCIIFIDEIDAVGRARSKNAGFSSN 343

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
           D + + +            N S   ++AAT RV +L   L    RF   I ++  ++ D 
Sbjct: 344 DERENTLNQLLTEMDGFDGN-SGVIILAATNRVDILDKALLRAGRFDRQIYVDLPDLNDR 402

Query: 189 KTIV---QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           K I     +G KL      D+ A       R TP  +G  +  V                
Sbjct: 403 KEIFLVHMKGLKLGPDVSVDQLA-------RQTPGFSGADIANV---------------C 440

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE---- 301
            +AAL+    DK   ++ D  ++  + R  GG    +E  +  ++E       + E    
Sbjct: 441 NEAALIAARHDKQAIEKQD--FMDAVDRIIGG----LEKKNKIITEDERRSIAIHEAGHA 494

Query: 302 --PYMIQQG--FIQRT--PRGRLLMPIAW 324
              +M + G   ++ T  PRG   +  AW
Sbjct: 495 TISWMTEYGNPLVKVTIVPRG-KALGAAW 522


>gi|326485351|gb|EGE09361.1| intermembrane space AAA protease IAP-1 [Trichophyton equinum CBS
           127.97]
          Length = 793

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 57/247 (23%), Positives = 92/247 (37%), Gaps = 26/247 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G  EA   L+  +E        +    +    +L VGPPG GKT LA+ VA E 
Sbjct: 344 RFSDVHGCDEAKDELQELVEFLSNPERFSSLGGKLPKGILLVGPPGTGKTLLARAVAGEA 403

Query: 79  GVNFRSTSGPVIA------KAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAME 130
           GV F   SG           A  +  L      +   ++FIDE+  +     E    A  
Sbjct: 404 GVPFFYMSGSEFDEIYVGVGAKRVRELFAQARAKAPAIIFIDELDAIGAKRNER-DAAYV 462

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
              L+ ++ E           S   +IAAT    LL   L    RF   + +N  ++   
Sbjct: 463 KQTLNQLLTELDGFSQT----SGVIIIAATNFPELLDKALTRPGRFDRKVDVNLPDVRGR 518

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             I+    K   ++   +A     + +RGTP  +G  L  + + A +  ++    +    
Sbjct: 519 VDILNHHMKNIQVSTEVDA----TVIARGTPGFSGADLENLINQAAIRASRDKKAKRPRN 574

Query: 249 ALLRLAI 255
            +LR   
Sbjct: 575 RMLRDED 581


>gi|320039500|gb|EFW21434.1| intermembrane space AAA protease IAP-1 [Coccidioides posadasii str.
           Silveira]
          Length = 811

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 58/260 (22%), Positives = 94/260 (36%), Gaps = 27/260 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G  EA   L+  +E        +    +    VL VGPPG GKT LA+ VA E 
Sbjct: 345 RFSDVHGCDEAKDELQELVEFLSNPERFSSLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 404

Query: 79  GVNFRSTSGPVIA------KAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAME 130
           GV F   SG           A  +  L      +   ++FIDE+  +     E    A  
Sbjct: 405 GVPFFYMSGSEFDEIYVGVGAKRVRELFNQARAKAPAIIFIDELDAIGAKRNER-DAAYV 463

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
              L+ ++ E           S   ++AAT    LL   L    RF   + +   ++   
Sbjct: 464 KQTLNQLLTELDGFSQS----SGVIILAATNYPQLLDKALTRPGRFDRKVVVGLPDVRGR 519

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             I++   K   ++   +AA    + +RGT   +G  L  + + A V  ++    ++  A
Sbjct: 520 VDILKHHMKNVQISTDVDAA----VIARGTSGFSGADLENLVNQAAVHASRYKKTKVGPA 575

Query: 249 ALLRLAI-DKMGFDQLDLRY 267
                     MG +      
Sbjct: 576 DFDWAKDKIIMGAESRSRVL 595


>gi|156937380|ref|YP_001435176.1| proteasome-activating nucleotidase [Ignicoccus hospitalis KIN4/I]
 gi|156566364|gb|ABU81769.1| 26S proteasome subunit P45 family [Ignicoccus hospitalis KIN4/I]
          Length = 400

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 55/268 (20%), Positives = 99/268 (36%), Gaps = 25/268 (9%)

Query: 15  EDADISLL----RPRT-LEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVG 61
           ED  +  +    RP+T   +  G  +    ++  +E      E         L  VL  G
Sbjct: 117 EDPYVKAMEVVERPKTRYSDVGGLKQQLEEVREVVELPLKNPEMFKEIGIEPLKGVLLYG 176

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDE 113
           PPG GKT +A+ VA E+G  F    G  +        A  +  +      +   ++FIDE
Sbjct: 177 PPGCGKTLIARAVAGEVGATFIRVVGSELVNKFIGEGARIVREVFNMARKKAPSIIFIDE 236

Query: 114 IHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD- 172
           I  ++    E+      + ++   + +  +       LS   +IAAT R+ +L   +   
Sbjct: 237 IDAIAAKRIEM--GTSGEREVQRTLMQLLAELDGFDPLSGVAVIAATNRLDILDPAILRP 294

Query: 173 -RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            RF   I +   + +    I+Q   +   +A   +      M    T      ++     
Sbjct: 295 GRFDRIIYIPPPDKKGRLEILQIHTRNMRMADDVDLEKIAEMTEGATGADLKAIVTEAGY 354

Query: 232 FAEVAHAKTITREIADAALLRLAIDKMG 259
            A     K +T E   AA+ ++   + G
Sbjct: 355 NALRNKRKYVTMEDFLAAVDKVMRKRAG 382


>gi|154486523|ref|ZP_02027930.1| hypothetical protein BIFADO_00338 [Bifidobacterium adolescentis
           L2-32]
 gi|154084386|gb|EDN83431.1| hypothetical protein BIFADO_00338 [Bifidobacterium adolescentis
           L2-32]
          Length = 814

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 44/236 (18%), Positives = 77/236 (32%), Gaps = 29/236 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     RP T +   GQ +    L   ++  K     L H  LF GP G GKT+ A+++A
Sbjct: 4   ALYRRYRPDTFDGVIGQDQVTVPLMRALDENK-----LTHAYLFSGPRGCGKTSSARILA 58

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDR----DVLFIDEIHRLSIIVEEILY----- 126
           R +        GP     G+ A+            DV+ ID      +     L      
Sbjct: 59  RCVNC----AKGPTSHPCGECASCRDLATGGPGSIDVVEIDAASHNGVDDARELRERAGF 114

Query: 127 -PAMEDFQLDLMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
            PA + +++ ++         G     + V+        I ATT    +   ++ R    
Sbjct: 115 APARDRYKIFILDEAHMVTPQGFNALLKIVEEPPEHVMFIFATTEPDKVIGTIRSR-THH 173

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                   E +   +++      +               G+ R    +L ++   A
Sbjct: 174 YPFRLVPQEVMGPYLEQICADEHIEAEAGVLRLAMRAGGGSVRDTLSVLDQLMVGA 229


>gi|119194407|ref|XP_001247807.1| hypothetical protein CIMG_01578 [Coccidioides immitis RS]
          Length = 811

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 58/260 (22%), Positives = 94/260 (36%), Gaps = 27/260 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G  EA   L+  +E        +    +    VL VGPPG GKT LA+ VA E 
Sbjct: 345 RFSDVHGCDEAKDELQELVEFLSNPERFSSLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 404

Query: 79  GVNFRSTSGPVIA------KAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAME 130
           GV F   SG           A  +  L      +   ++FIDE+  +     E    A  
Sbjct: 405 GVPFFYMSGSEFDEIYVGVGAKRVRELFNQARAKAPAIIFIDELDAIGAKRNER-DAAYV 463

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
              L+ ++ E           S   ++AAT    LL   L    RF   + +   ++   
Sbjct: 464 KQTLNQLLTELDGFSQS----SGVIILAATNYPQLLDKALTRPGRFDRKVVVGLPDVRGR 519

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             I++   K   ++   +AA    + +RGT   +G  L  + + A V  ++    ++  A
Sbjct: 520 VDILKHHMKNVQISTDVDAA----VIARGTSGFSGADLENLVNQAAVHASRYKKTKVGPA 575

Query: 249 ALLRLAI-DKMGFDQLDLRY 267
                     MG +      
Sbjct: 576 DFDWAKDKIIMGAESRSRVL 595


>gi|42525986|ref|NP_971084.1| cell division protein FtsH [Treponema denticola ATCC 35405]
 gi|41816036|gb|AAS10965.1| cell division protein FtsH [Treponema denticola ATCC 35405]
 gi|325475667|gb|EGC78843.1| cell division protein FtsH [Treponema denticola F0402]
          Length = 658

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 56/264 (21%), Positives = 100/264 (37%), Gaps = 31/264 (11%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAK-------ARAEALDHVLFVGPPGLGKTTLAQVVARE 77
              ++  G  EA   L   ++  K          +    VL VGPPG GKT LA+ VA E
Sbjct: 202 TRFKDVAGVDEAKEELMEVVDFLKYPQKYTEIGGKIPRGVLLVGPPGTGKTLLARAVAGE 261

Query: 78  LGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
            GV F   SG       V   A  +  L     ++   ++FIDE+  +        Y + 
Sbjct: 262 AGVPFFRISGSDFVEMFVGVGASRVRDLFRQAREKAPCIIFIDELDAIGKSR-HNSYSSN 320

Query: 130 EDFQLD----LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183
           ++ +      L+  +G   ++  I L      AAT R  +L   L    RF   + ++  
Sbjct: 321 DEREQTLNQLLVEMDGFDNKTGLILL------AATNRPDVLDPALLRPGRFDRQVVVDRP 374

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           +++  + I++  A+   L  + + A    + +  +      ++      A  +  KT+  
Sbjct: 375 DVKGREQILKLHAENVKLDASADLASIARITAGCSGADLANIINEAALLAVRSKRKTVIM 434

Query: 244 EIADAALLRLAIDKMGFDQLDLRY 267
              D A+ +  I   G  +     
Sbjct: 435 TDLDEAVEKAMI---GLQKKSRVI 455


>gi|57641092|ref|YP_183570.1| cell division protein CDC48 [Thermococcus kodakarensis KOD1]
 gi|57159416|dbj|BAD85346.1| CDC48/VCP homolog, AAA superfamily [Thermococcus kodakarensis KOD1]
          Length = 796

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 54/259 (20%), Positives = 89/259 (34%), Gaps = 31/259 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
           T E+  G  +    ++  IE      E            VL  GPPG GKT LA+ VA E
Sbjct: 180 TYEDIGGLKDVIQKVREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANE 239

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM 129
              +F + +GP I           L  +    E+    ++FIDEI  ++   EE      
Sbjct: 240 ANAHFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDSIAPKREE-----T 294

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ-----DRFGIPIRLNFYE 184
                  +V +  +      +  +  +I AT R   +   L+     DR       +   
Sbjct: 295 HGEVEKRVVSQLLTLMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDKQG 354

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAAC-----EIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
            +++  I  RG  +      D+        E     R     A   +++ +D  E+    
Sbjct: 355 RKEILQIHTRGMPIEPEFRRDKVIEILEELEKNDTYREAAERAIMKVKKAKDEEEIRRIL 414

Query: 240 TITREIADAALLRLAIDKM 258
             T E     +    ID +
Sbjct: 415 RETDEKLYEEVRAKLIDAL 433



 Score = 52.8 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 59/162 (36%), Gaps = 21/162 (12%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVARE 77
             ++  G  +    L+  +E      EA           +L  GPPG GKT LA+ VA E
Sbjct: 515 RWDDIGGLEDVKQELREAVEWPLKYPEAFMGLGITPPKGILLYGPPGTGKTLLAKAVANE 574

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAM 129
              NF +  GP +          ++  +          V+FIDEI  ++      +    
Sbjct: 575 SEANFIAIKGPEVLSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRGTDV---- 630

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
            +   D ++ +  +        S   +I AT R  ++   L 
Sbjct: 631 -NRVTDRLINQLLTEMDGIQENSGVVVIGATNRPDIIDPALL 671


>gi|13508410|ref|NP_110360.1| cell division protein FtsH [Mycoplasma pneumoniae M129]
 gi|2492509|sp|P75120|FTSH_MYCPN RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|1673833|gb|AAB95819.1| cell division protein FtsH [Mycoplasma pneumoniae M129]
 gi|301633109|gb|ADK86663.1| ATP-dependent metallopeptidase HflB [Mycoplasma pneumoniae FH]
          Length = 709

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 60/269 (22%), Positives = 103/269 (38%), Gaps = 26/269 (9%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTG-QVE------ACSNLKVFIEAAKARAEALD 55
           + + + S   +Q     S +R    +   G Q E          LK  ++ A+  A +  
Sbjct: 206 EEDNIFSIGKTQAKLAKSSVR---FDNIAGLQEEKHELLEIVDYLKNPLKYAQMGARSPR 262

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA------KAGDLAALLTNLEDRD-- 107
            V+  GPPG GKT LA+ VA E GV F  ++G           A  +  L    +     
Sbjct: 263 GVILYGPPGTGKTLLAKAVAGEAGVPFFQSTGSGFEDMLVGVGAKRVRDLFNKAKKAAPC 322

Query: 108 VLFIDEIHRLSIIVEEILYPAME--DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
           ++FIDEI  +      +   +    +  L+ ++ E     S         ++AAT R+ +
Sbjct: 323 IIFIDEIDSVGSKRGRVELSSYSVVEQTLNQLLAEMDGFTSRTG----VVVMAATNRLDV 378

Query: 166 LTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAG 223
           L + L    RF   I++N  +I++ + I+Q  AK   L+               +     
Sbjct: 379 LDDALLRPGRFDRHIQINLPDIKEREGILQVHAKNKNLSSKISLLDVAKRTPGFSGAQLE 438

Query: 224 RLLRRVRDFAEVAHAKTITREIADAALLR 252
            ++      A   +  TI     D A+ R
Sbjct: 439 NVINEATLLAVRDNRTTINMNDIDEAIDR 467


>gi|119025155|ref|YP_909000.1| DNA polymerase III subunits gamma and tau [Bifidobacterium
           adolescentis ATCC 15703]
 gi|118764739|dbj|BAF38918.1| DNA polymerase III subunit gamma_tau [Bifidobacterium adolescentis
           ATCC 15703]
          Length = 814

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 44/236 (18%), Positives = 77/236 (32%), Gaps = 29/236 (12%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     RP T +   GQ +    L   ++  K     L H  LF GP G GKT+ A+++A
Sbjct: 4   ALYRRYRPDTFDGVIGQDQVTVPLMRALDENK-----LTHAYLFSGPRGCGKTSSARILA 58

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDR----DVLFIDEIHRLSIIVEEILY----- 126
           R +        GP     G+ A+            DV+ ID      +     L      
Sbjct: 59  RCVNC----AKGPTSHPCGECASCRDLATGGPGSIDVVEIDAASHNGVDDARELRERAGF 114

Query: 127 -PAMEDFQLDLMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
            PA + +++ ++         G     + V+        I ATT    +   ++ R    
Sbjct: 115 APARDRYKIFILDEAHMVTPQGFNALLKIVEEPPEHVMFIFATTEPDKVIGTIRSR-THH 173

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                   E +   +++      +               G+ R    +L ++   A
Sbjct: 174 YPFRLVPQEVMGPYLEQICADEHIEAEAGVLRLAMRAGGGSVRDTLSVLDQLMVGA 229


>gi|118090312|ref|XP_420619.2| PREDICTED: hypothetical protein [Gallus gallus]
          Length = 871

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 49/286 (17%), Positives = 96/286 (33%), Gaps = 36/286 (12%)

Query: 15  EDADISLLR------PR-TLEEFTGQVEACSNLKVFIE--------AAKARAEALDHVLF 59
           +D   S +R      P+ +  +  G  +    LK  +E          +   +    VL 
Sbjct: 585 KDVRPSAMREVAVDVPKVSWSDIGGLEDVKLKLKQAVEWPLKHPDSFIRMGIQPPKGVLL 644

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DVLFI 111
            GPPG  KT +A+ +A E G+NF +  GP +     G+    +  +  +       +LF 
Sbjct: 645 YGPPGCSKTMIAKALAHESGLNFLAVKGPELMNKYVGESERAVREIFRKARMVSPSILFF 704

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DEI  L++               D ++ +  +       L   T++AAT R  ++   L 
Sbjct: 705 DEIDALAVERGNSSGAGN---VADRVLAQLLTEMDGIEQLKDVTILAATNRPDMIDKALL 761

Query: 172 D--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
              R    I +   +      I +   +   ++     A  I    + +      + R  
Sbjct: 762 RPGRIDRIIYVPLPDAATRGEIFRLHFRSMPVSEEICLAELIQRTHKYSGAEITAVCREA 821

Query: 230 RDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNF 275
              A         +E  +A  +     +     +  R    + + +
Sbjct: 822 ALLA--------LQEDINAKCIMGRHFRDALTVVTPRIPDSLIQFY 859



 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 54/229 (23%), Positives = 80/229 (34%), Gaps = 34/229 (14%)

Query: 29  EFTGQVEACSNLKVFIEAAK---ARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
           +  G     S LK   E  +    RAE            VL  GPPG GKT +A+ +A E
Sbjct: 331 DMIG--GLSSQLKTIRETVELPLKRAELFKSYGISPPRGVLLYGPPGTGKTLIAKAIANE 388

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIV---EEILY 126
           +G +    +GP I           L  +      R   ++FIDE+  L       +  + 
Sbjct: 389 VGAHVTVINGPEIISKFYGESESRLRQIFAEASLRRPSIIFIDELDALCPKREGAQNEVE 448

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
             +    L LM G G      ++      ++ AT R   L   L+   RF   I +    
Sbjct: 449 KRVVASLLTLMDGIGSEGSEGQL-----VVLGATNRPHALDAALRRPGRFDKEIEIGIPN 503

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
            +D   I+Q   KL         A E+   +       G  L  +   A
Sbjct: 504 AQDRLDILQ---KLLKKVPHSLTAAEMMQLADSAHGYVGADLAALCKEA 549


>gi|18407974|ref|NP_564824.1| AAA-type ATPase family protein [Arabidopsis thaliana]
 gi|15810167|gb|AAL06985.1| At1g64110/F22C12_22 [Arabidopsis thaliana]
 gi|30102500|gb|AAP21168.1| At1g64110/F22C12_22 [Arabidopsis thaliana]
 gi|332196076|gb|AEE34197.1| P-loop containing nucleoside triphosphate hydrolase-like protein
           [Arabidopsis thaliana]
          Length = 824

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 54/285 (18%), Positives = 98/285 (34%), Gaps = 44/285 (15%)

Query: 9   SRNVSQEDADISLLRPR---------TLEEFTGQVEACSNLKVFIEAAKARAE------- 52
           +  V+ ++     +RP          T ++     E   +L+  +     R +       
Sbjct: 488 APEVAPDNEFEKRIRPEVIPAEEINVTFKDIGALDEIKESLQELVMLPLRRPDLFTGGLL 547

Query: 53  -ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLED 105
                +L  GPPG GKT LA+ +A+E G +F + S   I          ++ AL T    
Sbjct: 548 KPCRGILLFGPPGTGKTMLAKAIAKEAGASFINVSMSTITSKWFGEDEKNVRALFTLASK 607

Query: 106 --RDVLFIDEIH-----RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIA 158
               ++F+DE+      R  +   E +     +F              +     R  ++A
Sbjct: 608 VSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFM-------SHWDGLMTKPGERILVLA 660

Query: 159 ATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGT 218
           AT R   L   +  RF   I +    +E+ + I+ R          +    E+AM + G 
Sbjct: 661 ATNRPFDLDEAIIRRFERRIMVGLPAVENREKIL-RTLLAKEKVDENLDYKELAMMTEGY 719

Query: 219 PRIAGRLL------RRVRDFAEVAHAKTITREIADAALLRLAIDK 257
                + L      R VR+  +    K   ++           D+
Sbjct: 720 TGSDLKNLCTTAAYRPVRELIQQERIKDTEKKKQREPTKAGEEDE 764


>gi|28200485|gb|AAO31691.1| DNA polymerase III gamma and tau subunits [Arthrospira platensis]
          Length = 768

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 37/102 (36%), Gaps = 4/102 (3%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +      RP+T  +  GQ      L   I + +         LF GP G GKT+ A+++A
Sbjct: 4   EPLHHKYRPQTFADLVGQEAIAQTLTNAIRSRRIA----PAYLFTGPRGTGKTSSARILA 59

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           + L     S          ++   +T     D + ID     
Sbjct: 60  KSLNCLQTSNPTETPCGICEVCRGITTGATLDFVEIDAASNT 101


>gi|3337433|gb|AAC27447.1| transitional endoplasmic reticulum ATPase TER94 [Drosophila
           melanogaster]
          Length = 801

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 84/257 (32%), Gaps = 28/257 (10%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVAR 76
            T  +  G       L+  ++      +            VLF GPPG GKT LA+ +A 
Sbjct: 471 TTWTDIGGLESVKKELQELVQYPVEHPDKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIAN 530

Query: 77  ELGVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127
           E   NF S  GP +         A   D+     +     VLF DE+  ++      +  
Sbjct: 531 ECQANFISVKGPELLTMWFGESEANVRDIFDKARSAAP-CVLFFDELDSIAKARGGNVGD 589

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           A      D ++ +  +            +I AT R  ++   +    R    I +   + 
Sbjct: 590 A--GGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDD 647

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA------EVAHAK 239
           +  + I++   + + LA   +      +    +      + +R    A           +
Sbjct: 648 KSREAILKANLRKSALAKEVDLTYIAKVTQGFSGADLTEICQRACKLAIRQAIEAEIRRE 707

Query: 240 TITREIADAALLRLAID 256
               E  ++A+     D
Sbjct: 708 KERAENQNSAMDMDEDD 724



 Score = 52.0 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 50/263 (19%), Positives = 88/263 (33%), Gaps = 38/263 (14%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARA--------EALDHVLFVGPPGLGKTTLAQVVARELG 79
           ++  G  +  + +K  +E              +    +L  GPPG GKT +A+ VA E G
Sbjct: 201 DDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVANETG 260

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMED 131
             F   +GP I          +L       E     ++FIDEI  ++   ++        
Sbjct: 261 AFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAIIFIDEIDAIAPKRDKTHGEVERR 320

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
               L+       +S     S   ++AAT R   +   L+   RF   I +   +     
Sbjct: 321 IVSQLLTLMDGMKKS-----SHLIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRL 375

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            +++   K   L   D    +IA  S G        L               +       
Sbjct: 376 EVLRIHTKNMKLH-DDVDLEQIAAESHGHVGADLASL--------------CSEAALQQI 420

Query: 250 LLRLAIDKMGFDQLDLRYLTMIA 272
             ++ +  +  D++D   L  +A
Sbjct: 421 REKMDLIDLEDDKIDAEVLASLA 443


>gi|86152635|ref|ZP_01070840.1| DNA polymerase III, gamma/tau subunits [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|121613206|ref|YP_001000834.1| DNA polymerase III subunits gamma and tau [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|167005747|ref|ZP_02271505.1| DNA polymerase III subunits gamma and tau [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|85843520|gb|EAQ60730.1| DNA polymerase III, gamma/tau subunits [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|87249219|gb|EAQ72180.1| DNA polymerase III, gamma/tau subunits [Campylobacter jejuni subsp.
           jejuni 81-176]
          Length = 509

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 52/235 (22%), Positives = 86/235 (36%), Gaps = 27/235 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     RP+T +E  GQ     +LK  +         L H  LF G  G GKT+ A++ +
Sbjct: 4   ALAIKYRPKTFDELIGQKTVSVSLKYAL-----NHNRLAHAYLFSGLRGSGKTSSARIFS 58

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHR-----LSIIVEEILY-P 127
           R L        GP     G     L  LE +  D++ +D         +  ++E+  Y P
Sbjct: 59  RALVCE----QGPSDTPCGTCKHCLAALEGKHIDIIEMDAASNRGLEDIQALIEQTKYTP 114

Query: 128 AMEDFQLDLMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +M  F++ ++               ++++   S    I ATT    L   +  R      
Sbjct: 115 SMARFKIFIIDEVHMLTPQAANALLKTLEEPPSYVKFILATTDPLKLPATVLSRTQHFRF 174

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
               + E L   ++       +   +EA   IA    G+ R    LL +   F +
Sbjct: 175 KQIPQSEIL-NHLKEILLKENVKFEEEALKFIARSGNGSLRDTLTLLDQAIIFCQ 228


>gi|209523005|ref|ZP_03271562.1| DNA polymerase III, subunits gamma and tau [Arthrospira maxima
           CS-328]
 gi|209496592|gb|EDZ96890.1| DNA polymerase III, subunits gamma and tau [Arthrospira maxima
           CS-328]
          Length = 768

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 37/102 (36%), Gaps = 4/102 (3%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +      RP+T  +  GQ      L   I + +         LF GP G GKT+ A+++A
Sbjct: 4   EPLHHKYRPQTFADLVGQEAIAQTLTNAIRSRRIA----PAYLFTGPRGTGKTSSARILA 59

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           + L     S          ++   +T     D + ID     
Sbjct: 60  KSLNCLQTSNPTETPCGICEVCRGITTGATLDFVEIDAASNT 101


>gi|108805246|ref|YP_645183.1| DNA polymerase III subunits gamma and tau [Rubrobacter xylanophilus
           DSM 9941]
 gi|108766489|gb|ABG05371.1| DNA polymerase III, subunits gamma and tau [Rubrobacter
           xylanophilus DSM 9941]
          Length = 567

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 54/241 (22%), Positives = 86/241 (35%), Gaps = 21/241 (8%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPRT  E  GQ      L+  IE  +         LF GP G GKT+ A+V+A  +G+N 
Sbjct: 11  RPRTFGEIAGQEPVVRTLRRAIETGRVAHAY----LFSGPRGTGKTSTAKVLA--MGLNC 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDL 136
                P      +    +      DV+ +D      I     L       PA    ++ +
Sbjct: 65  AQGPTPEPCGRCESCRSIVAGSSMDVIEMDAASNRGIDEIRELRDRVNLAPAAGRAKVYI 124

Query: 137 M------VGEGPSARSVKINLSR--FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           +        E  +A    +         + ATT    +   +  R           +  L
Sbjct: 125 IDEVHMLTTEAFNALLKMLEEPPEHVVFVLATTEKHKVLPTIISRCQ-SFDFRRPGVGTL 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              +   A+  G+    EA   IA  S G+ R A  +L ++  F+E      + RE+  +
Sbjct: 184 VEKLSEIARAEGIEAEREALTAIARASGGSFRDAEGMLDQISSFSEGRVTVALVRELLGS 243

Query: 249 A 249
           A
Sbjct: 244 A 244


>gi|329770552|ref|ZP_08261930.1| ATP-dependent protease La [Gemella sanguinis M325]
 gi|328836301|gb|EGF85970.1| ATP-dependent protease La [Gemella sanguinis M325]
          Length = 765

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 77/189 (40%), Gaps = 33/189 (17%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           ++  G  +    +  F+   K R +    +L   GPPG+GK++LA+ +A+ +G +F   S
Sbjct: 315 DDHYGLEKIKERILEFLAVKKLRDDMKSPILCLSGPPGVGKSSLAKSIAKSMGRSFVRIS 374

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRL--------SIIVE 122
              +    ++                           V+ +DEI ++        S  + 
Sbjct: 375 LGGVRDEAEIRGHRRTYLGALPGKLIQSLKKVKTKNPVILLDEIDKMTSDIKGDPSSAML 434

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E++ PA  +  +D           +  +LS+   IA    + L+  PL+DR  + I L  
Sbjct: 435 EVIDPAQNNEFVD-------HYLDIPFDLSKVLFIATANNLSLIPAPLRDRMEV-IELES 486

Query: 183 YEIEDLKTI 191
           Y +++ + I
Sbjct: 487 YTVKEKENI 495


>gi|323455979|gb|EGB11846.1| hypothetical protein AURANDRAFT_69630 [Aureococcus anophagefferens]
          Length = 801

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 51/258 (19%), Positives = 90/258 (34%), Gaps = 30/258 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALD--------HVLFVGPPGLGKTTLAQVVARE 77
           T ++  G  +    LK  ++      E  +         VLF GPPG GKT +A+ VA E
Sbjct: 470 TWDDIGGLQDVKRELKELVQYPVEHPEKFEKFGMNPSRGVLFYGPPGCGKTLMAKAVANE 529

Query: 78  LGVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
              NF S  GP +         A   DL           VLF DE+  +    +      
Sbjct: 530 CQANFISVKGPELLTMWFGESEANVRDLFEKARAAAP-CVLFFDELDSI--AGQRGGSSG 586

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
                 D ++ +  +      +     +I AT R  ++   L    R    I +   ++E
Sbjct: 587 DGGGAADRVINQLLTEIDGVGSKKNVFVIGATNRPDIIDAALMRPGRLDQLIYIPMPDLE 646

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
              +I++   + + ++   +     A   + T      + +R    A         RE  
Sbjct: 647 SRLSILKATLRKSPISTDVDLDFLAANTEKYTGADLTEICQRAAKLA--------IRENI 698

Query: 247 DAALLRLAIDKMGFDQLD 264
           +  + R  + +   D +D
Sbjct: 699 ERDIEREKLREENEDAMD 716



 Score = 56.6 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 50/266 (18%), Positives = 83/266 (31%), Gaps = 32/266 (12%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------------VLFVGPPGLGKTTLA 71
            L++  G  +     K   +  +     L H              VL  GPPG GKT +A
Sbjct: 192 RLDD-VGYDDIGGCRKQMAQIREMIELPLRHPTLFKTLGVKPPRGVLLYGPPGSGKTLIA 250

Query: 72  QVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEE 123
           + VA E G  F   +GP I          +L       E     ++FIDEI  ++   ++
Sbjct: 251 RAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAIIFIDEIDSIAPKRDK 310

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLN 181
                        +V +  +        +   +I AT R   +   L+   RF   I + 
Sbjct: 311 -----TNGEVERRIVSQLLTLMDGLKQRAHVVVIGATNRPNSMDPALRRFGRFDREIDIG 365

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
             +      I +   +   L    +   E   R       A           +    K  
Sbjct: 366 VPDENGRLEIFRIHTRNMKLDDDVDP--ESIARDTHGFVGADMAALCTEAAMQCIREKMD 423

Query: 242 TREIADAALLRLAIDKMGFDQLDLRY 267
             +I +  +    +D M   Q   +Y
Sbjct: 424 LIDIDEETIDAEVLDSMAVTQDHFKY 449


>gi|301091915|ref|XP_002896132.1| cell division control protein 48 [Phytophthora infestans T30-4]
 gi|262094952|gb|EEY53004.1| cell division control protein 48 [Phytophthora infestans T30-4]
          Length = 804

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 76/229 (33%), Gaps = 23/229 (10%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLED 105
           +    VL  GPPG GKT +A+ VA E G  F   +GP I          +L       E 
Sbjct: 231 KPPRGVLLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEK 290

Query: 106 R--DVLFIDEIHRLSIIVEEILYPA---MEDFQLDLMVGEGPSARSVKINLSRFTLIAAT 160
               ++FIDEI  ++   E+        +    L LM G    A  V I         AT
Sbjct: 291 NAPAIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKQRASVVVI--------GAT 342

Query: 161 TRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGT 218
            R   +   L+   RF   I +   +      I +   +   L    +   E+  R    
Sbjct: 343 NRPNSMDPALRRFGRFDREIDIGVPDENGRLEIFRIHTRNMKLDDDVDP--EMIARDTQG 400

Query: 219 PRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRY 267
              A           +    K    +I D  +    +D M   Q   +Y
Sbjct: 401 FVGADMAALCTEAALQCIREKMDVIDIEDETIDAEILDAMAVTQAHFKY 449



 Score = 47.8 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 75/226 (33%), Gaps = 20/226 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVARE 77
           T ++  G       L   ++      E            VLF GPPG GKT LA+ VA E
Sbjct: 470 TWKDIGGLESVKRELLELVQYPVEHPEKFEKYGLSPSKGVLFYGPPGCGKTLLAKAVANE 529

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
              NF S  GP +          ++  +          VLF DE+  ++         A 
Sbjct: 530 CQANFISIKGPELLTMWFGESEANVREVFDKARGAAPCVLFFDELDSIAQQRGSSSGDAG 589

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                D ++ +  +            +I AT R  ++   L    R    I +   + E 
Sbjct: 590 GAG--DRVMNQLLTEMDGMGAKKNVFIIGATNRPDIIDPALMRPGRLDQLIFIPMPDFES 647

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
             +I++   + + ++   +         + +      + +R    A
Sbjct: 648 RLSILRSVLRKSPVSKEVDLNFLAQQTDKFSGADLTEICQRAAKLA 693


>gi|3808101|emb|CAA09935.1| chloroplast protease [Capsicum annuum]
          Length = 693

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 56/274 (20%), Positives = 95/274 (34%), Gaps = 23/274 (8%)

Query: 26  TLEEFTG-----QV--EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G     Q   E    LK         A     VL VGPPG GKT LA+ +A E 
Sbjct: 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEA 288

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG           A  +  L    ++    ++F+DEI  +       +    +
Sbjct: 289 GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGND 348

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E               ++AAT R  +L + L    RF   + ++  +I+
Sbjct: 349 EREQTLNQLLTEMDGFEGNTG----IIVVAATNRADILDSALLRPGRFDRQVSVDVPDIK 404

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
               I++  A                     +      LL      A       I  +  
Sbjct: 405 GRTEILKVHAGNKKFDSDVSLEVIAMRTPGFSGADLANLLSEAAILAGRRGKTAIASKEI 464

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV 280
           D ++ R+     G    D +  +++A +  G  +
Sbjct: 465 DDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAI 498


>gi|74316533|ref|YP_314273.1| DNA polymerase subunits gamma and tau [Thiobacillus denitrificans
           ATCC 25259]
 gi|74056028|gb|AAZ96468.1| DNA polymerase subunits gamma and tau [Thiobacillus denitrificans
           ATCC 25259]
          Length = 581

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 59/201 (29%), Gaps = 41/201 (20%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LF 59
           M D   L   + S   A     RPR   +  GQ      L   +   +     L H  L 
Sbjct: 1   MTD---LFGESASPAMALARKWRPRAFADLRGQEHVVQALSNALTQGR-----LHHAYLL 52

Query: 60  VGPPGLGKTTLAQVVARELGVNF------------------------RSTSGPVIAKAGD 95
            G  G+GKTTLA+++A+ L                                        +
Sbjct: 53  TGTRGVGKTTLARILAKCLNCESGVSATPCGTCSACTQIDAGRFVDLLELDAASNTGVDN 112

Query: 96  LAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSV 147
           +  +L N +         V  IDE+H LS      +   +E+    +  ++      +  
Sbjct: 113 MREVLDNAQYAPTVGRYKVYIIDEVHMLSKPAFNSMLKTLEEPPAHVKFILATTDPQKIP 172

Query: 148 KINLSRFTLIAATTRVGLLTN 168
              LSR            L  
Sbjct: 173 VTVLSRCLQFNLKPMTPALVA 193


>gi|303311303|ref|XP_003065663.1| ATP-dependent metalloprotease FtsH family protein [Coccidioides
           posadasii C735 delta SOWgp]
 gi|240105325|gb|EER23518.1| ATP-dependent metalloprotease FtsH family protein [Coccidioides
           posadasii C735 delta SOWgp]
          Length = 811

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 58/260 (22%), Positives = 94/260 (36%), Gaps = 27/260 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G  EA   L+  +E        +    +    VL VGPPG GKT LA+ VA E 
Sbjct: 345 RFSDVHGCDEAKDELQELVEFLSNPERFSSLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 404

Query: 79  GVNFRSTSGPVIA------KAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAME 130
           GV F   SG           A  +  L      +   ++FIDE+  +     E    A  
Sbjct: 405 GVPFFYMSGSEFDEIYVGVGAKRVRELFNQARAKAPAIIFIDELDAIGAKRNER-DAAYV 463

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
              L+ ++ E           S   ++AAT    LL   L    RF   + +   ++   
Sbjct: 464 KQTLNQLLTELDGFSQS----SGVIILAATNYPQLLDKALTRPGRFDRKVVVGLPDVRGR 519

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             I++   K   ++   +AA    + +RGT   +G  L  + + A V  ++    ++  A
Sbjct: 520 VDILKHHMKNVQISTDVDAA----VIARGTSGFSGADLENLVNQAAVHASRYKKTKVGPA 575

Query: 249 ALLRLAI-DKMGFDQLDLRY 267
                     MG +      
Sbjct: 576 DFDWAKDKIIMGAESRSRVL 595


>gi|268318150|ref|YP_003291869.1| DNA polymerase III, subunits gamma and tau [Rhodothermus marinus
           DSM 4252]
 gi|262335684|gb|ACY49481.1| DNA polymerase III, subunits gamma and tau [Rhodothermus marinus
           DSM 4252]
          Length = 610

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 52/274 (18%), Positives = 79/274 (28%), Gaps = 64/274 (23%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARE 77
               RP+   E   Q      LK  +     R   L H  LF GP G+GKTT A+++A+ 
Sbjct: 10  ARKYRPQLFRELVAQEHVTETLKNAL-----RLNRLGHAYLFSGPRGVGKTTAARLLAKA 64

Query: 78  LGV-----------------------------NFRSTSGPVIAKAGDLAALLTNLE---- 104
           +                               N          K  D+  L   +     
Sbjct: 65  INCQTPLEEREDHAEPCRRCEACVAFEEGRSLNVFEIDAASNNKVEDVRELRETVRVPPQ 124

Query: 105 --DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTR 162
              + V  IDE+H LS      L   +E+                         I ATT 
Sbjct: 125 GARKKVYIIDEVHMLSNAAFNALLKTLEE------------------PPPHALFIFATTE 166

Query: 163 VGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
              +   +  R           +E +   ++      G+   DE+   +A +  G  R A
Sbjct: 167 PHKVLPTILSRCQ-RFDFRRIPVEAIVARLREICVAEGVEADDESLMLLARKGDGALRDA 225

Query: 223 GRLLRRVRDFAEVAHAKTITREIADAALLRLAID 256
                   D A      T+       AL  + +D
Sbjct: 226 LS----AFDQAVSLCGTTLRYAELAQALGVVDLD 255


>gi|222422955|dbj|BAH19462.1| AT1G64110 [Arabidopsis thaliana]
          Length = 769

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 54/285 (18%), Positives = 98/285 (34%), Gaps = 44/285 (15%)

Query: 9   SRNVSQEDADISLLRPR---------TLEEFTGQVEACSNLKVFIEAAKARAE------- 52
           +  V+ ++     +RP          T ++     E   +L+  +     R +       
Sbjct: 493 APEVAPDNEFEKRIRPEVIPAEEINVTFKDIGALDEIKESLQELVMLPLRRPDLFTGGLL 552

Query: 53  -ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLED 105
                +L  GPPG GKT LA+ +A+E G +F + S   I          ++ AL T    
Sbjct: 553 KPCRGILLFGPPGTGKTMLAKAIAKEAGASFINVSMSTITSKWFGEDEKNVRALFTLASK 612

Query: 106 --RDVLFIDEIH-----RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIA 158
               ++F+DE+      R  +   E +     +F              +     R  ++A
Sbjct: 613 VSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFM-------SHWDGLMTKPGERILVLA 665

Query: 159 ATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGT 218
           AT R   L   +  RF   I +    +E+ + I+ R          +    E+AM + G 
Sbjct: 666 ATNRPFDLDEAIIRRFERRIMVGLPAVENREKIL-RTLLAKEKVDENLDYKELAMMTEGY 724

Query: 219 PRIAGRLL------RRVRDFAEVAHAKTITREIADAALLRLAIDK 257
                + L      R VR+  +    K   ++           D+
Sbjct: 725 TGSDLKNLCTTAAYRPVRELIQQERIKDTEKKKQREPTKAGEEDE 769


>gi|213649285|ref|ZP_03379338.1| DNA polymerase III subunits gamma and tau [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
          Length = 172

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 46/139 (33%), Gaps = 34/139 (24%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+ L    
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCET 66

Query: 83  ------------------------RSTSGPVIAKAGDLAALLTNLE------DRDVLFID 112
                                            K  D   LL N++         V  ID
Sbjct: 67  GITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLID 126

Query: 113 EIHRLSIIVEEILYPAMED 131
           E+H LS      L   +E+
Sbjct: 127 EVHMLSRHSFNALLKTLEE 145


>gi|213024200|ref|ZP_03338647.1| DNA polymerase III subunits gamma and tau [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
          Length = 150

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 46/139 (33%), Gaps = 34/139 (24%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ    + L        +        LF G  G+GKT++A+++A+ L    
Sbjct: 11  RPQTFADVVGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCET 66

Query: 83  ------------------------RSTSGPVIAKAGDLAALLTNLE------DRDVLFID 112
                                            K  D   LL N++         V  ID
Sbjct: 67  GITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLID 126

Query: 113 EIHRLSIIVEEILYPAMED 131
           E+H LS      L   +E+
Sbjct: 127 EVHMLSRHSFNALLKTLEE 145


>gi|223935395|ref|ZP_03627312.1| chromosomal replication initiator protein DnaA [bacterium Ellin514]
 gi|223895805|gb|EEF62249.1| chromosomal replication initiator protein DnaA [bacterium Ellin514]
          Length = 462

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 45/241 (18%), Positives = 81/241 (33%), Gaps = 28/241 (11%)

Query: 51  AEALDHVLFVGPPGLGKTTLAQVVAREL-GVNFRSTSGPVIAKA-----------GDLAA 98
            ++ + +   G  GLGKT L   +   +      +    V ++              +A 
Sbjct: 156 GKSYNPLFLYGGVGLGKTHLLHAIGHHVLSHKKGARVAYVSSEKFTNEYIDAIQNNQIAK 215

Query: 99  LLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIA 158
                   DVL ID+I               E  Q +          + K  +   T   
Sbjct: 216 FRKKYRQTDVLLIDDIQ---------FLAGKERIQEEFFHTFNALHEAHKQIV--LTCDR 264

Query: 159 ATTRVGLLTNPLQDRF--GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSR 216
             + +  L + L  RF  G+   L   +IE    I+++ A   G+ + ++    +A R R
Sbjct: 265 PASEIQNLEHRLVSRFEWGLVTDLQPPDIETRMAILRKKAASMGVELPEDILNFLANRIR 324

Query: 217 GTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLR-YLTMIARNF 275
              R     L RV  +A +   K          LLR  + + G   +++      +A +F
Sbjct: 325 ANIRRLEGALIRVASYASLTGKKLTIE--VVEGLLREVLHEEGRYSINIETIQKKVAEHF 382

Query: 276 G 276
            
Sbjct: 383 D 383


>gi|146175214|ref|XP_001470868.1| metalloprotease m41 ftsh [Tetrahymena thermophila]
 gi|146144688|gb|EDK31554.1| metalloprotease m41 ftsh [Tetrahymena thermophila SB210]
          Length = 708

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 93/249 (37%), Gaps = 24/249 (9%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAK-------ARAEALDHVLFVGPPGLGKTTLAQVVARE 77
               +  G  E    L   ++  K       A A+    +L VGPPG GKT LA+ +A E
Sbjct: 274 TRFSDVLGIDEFKEELIELVDYLKNPQKYHEAGAKLPKGILLVGPPGTGKTLLARALAGE 333

Query: 78  LGVNFRSTSGPVIA------KAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM 129
            G +F   SG           A  +  L     ++   ++FIDEI  ++        P+ 
Sbjct: 334 AGCSFFYKSGSEFDEMFVGVGASRVRELFKKAREKAPSIIFIDEIDSVAGSRRST-DPSN 392

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
               ++ ++ E    +          +I AT     +   ++   RF   I +   +I  
Sbjct: 393 SRDTVNQILAEMDGFKQTD----NVIVIGATNFEQAIDPAIKRPGRFDKLIHVPLPDIRG 448

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI-TREIA 246
            + + +   K       D  A E+A ++ G        +  +     + + +TI   +  
Sbjct: 449 REQLFEYYLKNIKYD-PDVKAKELARQTSGFSGADISNMVNISILNSIKNNRTIANLKDF 507

Query: 247 DAALLRLAI 255
           D AL R+A+
Sbjct: 508 DFALDRIAM 516


>gi|145615073|ref|XP_001414254.1| hypothetical protein MGG_13023 [Magnaporthe oryzae 70-15]
 gi|145021995|gb|EDK06015.1| hypothetical protein MGG_13023 [Magnaporthe oryzae 70-15]
          Length = 405

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 77/241 (31%), Gaps = 28/241 (11%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
                   +   RP +L + +G  +  + +  F++A +     L H+L  GPPG GKT+ 
Sbjct: 39  EAEDSLPWVEKYRPVSLADVSGHQDILATVNKFVDANR-----LPHLLLYGPPGTGKTST 93

Query: 71  AQVVAR------ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
              +AR       +       +         +   +        +F    H+        
Sbjct: 94  ILALARRIYGADNVRQMVLELNASDDRGIDVVREQIKTFASTKQIFTLGFHKAPAAASSS 153

Query: 125 LYPAME--------DFQLDLMVGEGPSARSVKINLSRF--------TLIAATTRVGLLTN 168
              +           ++L ++        + ++ L R                    L+ 
Sbjct: 154 ASTSNNPSATRPTPSYKLIILDEADAMTNTAQMALRRIMEKYTANTRFCIIANYAHKLSP 213

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            L  R     R +  +  D++ +V R  +   + +  +A   +   +RG  R A  +L+ 
Sbjct: 214 ALLSRC-TRFRFSPLKEADIRVLVDRVVEEETVNIRPDAVDALVRLARGDMRRALNVLQA 272

Query: 229 V 229
            
Sbjct: 273 C 273


>gi|30696968|ref|NP_849842.1| AAA-type ATPase family protein [Arabidopsis thaliana]
 gi|332196075|gb|AEE34196.1| P-loop containing nucleoside triphosphate hydrolase-like protein
           [Arabidopsis thaliana]
          Length = 829

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 54/285 (18%), Positives = 98/285 (34%), Gaps = 44/285 (15%)

Query: 9   SRNVSQEDADISLLRPR---------TLEEFTGQVEACSNLKVFIEAAKARAE------- 52
           +  V+ ++     +RP          T ++     E   +L+  +     R +       
Sbjct: 493 APEVAPDNEFEKRIRPEVIPAEEINVTFKDIGALDEIKESLQELVMLPLRRPDLFTGGLL 552

Query: 53  -ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLED 105
                +L  GPPG GKT LA+ +A+E G +F + S   I          ++ AL T    
Sbjct: 553 KPCRGILLFGPPGTGKTMLAKAIAKEAGASFINVSMSTITSKWFGEDEKNVRALFTLASK 612

Query: 106 --RDVLFIDEIH-----RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIA 158
               ++F+DE+      R  +   E +     +F              +     R  ++A
Sbjct: 613 VSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFM-------SHWDGLMTKPGERILVLA 665

Query: 159 ATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGT 218
           AT R   L   +  RF   I +    +E+ + I+ R          +    E+AM + G 
Sbjct: 666 ATNRPFDLDEAIIRRFERRIMVGLPAVENREKIL-RTLLAKEKVDENLDYKELAMMTEGY 724

Query: 219 PRIAGRLL------RRVRDFAEVAHAKTITREIADAALLRLAIDK 257
                + L      R VR+  +    K   ++           D+
Sbjct: 725 TGSDLKNLCTTAAYRPVRELIQQERIKDTEKKKQREPTKAGEEDE 769


>gi|15605057|ref|NP_219841.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis
           D/UW-3/CX]
 gi|3328753|gb|AAC67929.1| DNA Pol III Gamma and Tau [Chlamydia trachomatis D/UW-3/CX]
 gi|297748464|gb|ADI51010.1| DNA polymerase III subunit gamma/tau [Chlamydia trachomatis D-EC]
 gi|297749344|gb|ADI52022.1| DNA polymerase III subunit gamma/tau [Chlamydia trachomatis D-LC]
          Length = 466

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 52/270 (19%), Positives = 83/270 (30%), Gaps = 58/270 (21%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
              RP    E  GQ    S LK  +   +A        +F G  G GKTTLA+V A+ L 
Sbjct: 9   RRYRPNNFSEILGQDIVVSILKNSLRLNRAAHAY----IFSGIRGTGKTTLARVFAKALN 64

Query: 80  VNFRS-------------------------TSGPVIAKAGDLAALLTNL------EDRDV 108
               +                           G       D+  +   +          +
Sbjct: 65  CQNPTQDQEPCNQCAICKEISLGTSMDVIEIDGASHRGIEDIRQINETVLFVPSKSRYKI 124

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
             IDE+H L+      L   +E+  +                        ATT +  + N
Sbjct: 125 YIIDEVHMLTKEAFNSLLKTLEEPPV------------------HVKFFLATTEIAKIPN 166

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            +  R    +       E +   +   AK  G   + EA   IA  ++G+ R A  L   
Sbjct: 167 TISSRCQKMLLKRI-SEETIIDKLATIAKQEGTETSREALLPIAKAAQGSLRDAESLYDY 225

Query: 229 VRDFAEVAHAKTITREIADAALLRLAIDKM 258
           V         +++  +    AL  L+ D +
Sbjct: 226 VVGLFP----ESLDPDSTAKALGILSEDSL 251


>gi|312882074|ref|ZP_07741824.1| DNA polymerase III subunits gamma and tau [Vibrio caribbenthicus
           ATCC BAA-2122]
 gi|309370210|gb|EFP97712.1| DNA polymerase III subunits gamma and tau [Vibrio caribbenthicus
           ATCC BAA-2122]
          Length = 671

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 51/265 (19%), Positives = 77/265 (29%), Gaps = 57/265 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP    +  GQ    + L    E A A+       L  G  G+GKTT+ ++ A+ L    
Sbjct: 11  RPTQFNQVVGQRHVLTAL----ENALAQNRLHHAYLLSGTRGVGKTTIGRLFAKGLNCET 66

Query: 83  ------------------------RSTSGPVIAKAGDLAALLTNLEDRD------VLFID 112
                                            K  D   LL N++ +       V  ID
Sbjct: 67  GITAQPCGQCSTCQEIDQGRFVDLLEIDAASRTKVEDTRDLLDNVQYKPARGRFKVYLID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS      L   +E+                         I ATT    L   +  
Sbjct: 127 EVHMLSRHSFNALLKTLEE------------------PPEYVKFILATTDPQKLPVTILS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R  +   L   E E+++  +        +     A   +A  + G+ R A  L     D 
Sbjct: 169 RC-LQFDLKPIESEEIQQQLTYILGQEQVESETRALSLLAHAADGSMRDALSL----TDQ 223

Query: 233 AEVAHAKTITREIADAALLRLAIDK 257
           A       +  +     L  L  D 
Sbjct: 224 AIALGNGRVMTDSVTYMLGTLDTDH 248


>gi|307544645|ref|YP_003897124.1| DNA polymerase III subunits gamma and tau [Halomonas elongata DSM
           2581]
 gi|307216669|emb|CBV41939.1| DNA polymerase III subunits gamma and tau [Halomonas elongata DSM
           2581]
          Length = 684

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 53/287 (18%), Positives = 82/287 (28%), Gaps = 73/287 (25%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV-- 80
           RPRT  E  GQ       +  +  A  +       LF G  G+GKTTLA+++A+ L    
Sbjct: 11  RPRTFHELVGQEHV----QRALVNALDQGRLHHAYLFTGTRGVGKTTLARILAKCLNCTA 66

Query: 81  ----------------------------NFRSTSGPVIAKAGDLAALLTNLE------DR 106
                                       +          K  D   LL N++        
Sbjct: 67  GGPGDEAVTSQPCGQCSNCQAIDQGRFVDLLEVDAASRTKVEDTRELLDNVQYAPTQGRY 126

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
            V  IDE+H LS      L   +E+                         + ATT    L
Sbjct: 127 KVYLIDEVHMLSTSSFNALLKTLEE------------------PPPHVKFLLATTDPQKL 168

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
              +  R  +   L     E +   +    +   +   + A   +   + G+ R A  L 
Sbjct: 169 PPTVLSRC-LQFTLKHMPPERIVGHLSMVLEAESVPFEESALWLLGKAAEGSMRDAMSL- 226

Query: 227 RRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIAR 273
               D A       +      A L            LD R++  +  
Sbjct: 227 ---TDQAIAFGQGEVRHGDVAAMLG----------TLDHRHVLALIE 260


>gi|85067857|gb|ABC69312.1| mitochondrial Lon protease [Pichia angusta]
          Length = 1098

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 54/262 (20%), Positives = 90/262 (34%), Gaps = 40/262 (15%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  E    +  FI   K   +    ++ FVGPPG+GKT++ + +AR L   F   S
Sbjct: 550 EDHYGLKEVKDRILEFIAVGKLLNKINGKIICFVGPPGVGKTSIGKSIARALNRKFYRFS 609

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSI----------- 119
              +    ++                        +  ++ IDEI ++S            
Sbjct: 610 VGGLTDVAEIKGHRRTYVGAIPGRMVQALKNTETENPLVLIDEIDKISHTHHGSGGDPSA 669

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
            + E+L P      +D           V INLSR   +     +  +  PL DR  +   
Sbjct: 670 ALLELLDPEQNGTFMDYY-------MDVPINLSRVLFVCTANTLSTIPAPLLDRMEVIEI 722

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
             + E E +K      A+        E +    +           L+R     + V + K
Sbjct: 723 AGYVEDEKIK-----IAENYLAPSAKETSGLTDVDISLREDTLQELIRGYCRESGVRNLK 777

Query: 240 TITREIADAALLRLAIDKMGFD 261
               +I   A L++  D  G D
Sbjct: 778 KQIEKIFRKAALKVVKDVDGVD 799


>gi|308234464|ref|ZP_07665201.1| ATP-dependent metalloprotease FtsH [Atopobium vaginae DSM 15829]
 gi|328944311|ref|ZP_08241775.1| cell division protein FtsH [Atopobium vaginae DSM 15829]
 gi|327491230|gb|EGF23005.1| cell division protein FtsH [Atopobium vaginae DSM 15829]
          Length = 635

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 57/229 (24%), Positives = 91/229 (39%), Gaps = 26/229 (11%)

Query: 26  TLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ EA  +L+  +       + A   A      L VGPPG GKT LA+ VA E 
Sbjct: 182 TFKDVAGQDEAKDSLREIVSFLDNPKKYAAIGARCPKGALLVGPPGTGKTLLARAVAGEA 241

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F   SG           A  +  L    +++   ++FIDE+  +       +    E
Sbjct: 242 KVPFFQISGSEFVEMFVGRGAAKVRDLFKQAKEKAPCIIFIDELDTVGKKRGVSVNSNDE 301

Query: 131 -DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            +  L+ ++ E     + K       ++AAT R   L   L    RF   I +   ++  
Sbjct: 302 REQTLNQLLAEMDGFDNHKG----IVVLAATNRPETLDLALLRPGRFDRRIPVELPDLTG 357

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
            + I+    KL    V  E   + A  +R TP  +G  L  + + A + 
Sbjct: 358 REAIL----KLHASDVKMEQGIDFAQVARQTPGTSGADLANMINEAALR 402


>gi|84998148|ref|XP_953795.1| replication factor C subunit (RPC2 )  [Theileria annulata]
 gi|65304792|emb|CAI73117.1| replication factor C subunit (RPC2 homologue) , putative [Theileria
           annulata]
          Length = 336

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 41/278 (14%), Positives = 94/278 (33%), Gaps = 41/278 (14%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
           V+++   +   RP+ + +   Q +A S ++  IE        + H++F GPPG GKT+ A
Sbjct: 3   VTKDVPWVEKYRPKKISDVIFQTQAVSIMEQIIE-----TFNMPHMIFHGPPGTGKTSAA 57

Query: 72  QVVARE------LGVNFRSTSGPVIAKAGDLAALLTNLEDRDV----------------- 108
             +AR+      +       +         +   +      ++                 
Sbjct: 58  LAMARQIYGLEGMRERVLELNASDERGIDVVRDRIKTYTRINISNNRVNPETNRVMPNYK 117

Query: 109 -LFIDEIHRLSIIVEEILYPAMEDFQLD--LMVGEGPSARSVKINLSRFTLIAATTRVGL 165
            + +DE   ++   +  L   +E++      ++      + +    SR ++         
Sbjct: 118 MIILDEADMITADAQAALRRVIENYSSISRFILICNYLHKIIGPIYSRCSVFHFKPIE-- 175

Query: 166 LTNPLQDRFGIPIRLNF--YEIEDLKTI----VQRGAKLTGLAVTDEAACEIAMRSRGTP 219
            TN   DR           ++ + L TI    +++   +  + +   A     +      
Sbjct: 176 -TNSQIDRLKYICNQEGITFDPKFLTTISSGDMRKSITILQVILGSTACLYNEITENAIY 234

Query: 220 RIAGRLLRRVRDFA-EVAHAKTITREIADAALLRLAID 256
            ++G+  +RV +   EV        E     ++    D
Sbjct: 235 SVSGKPPKRVVESIFEVCRRPEGDVESVCKQIVHDGWD 272


>gi|297527311|ref|YP_003669335.1| AAA family ATPase, CDC48 subfamily [Staphylothermus hellenicus DSM
           12710]
 gi|297256227|gb|ADI32436.1| AAA family ATPase, CDC48 subfamily [Staphylothermus hellenicus DSM
           12710]
          Length = 734

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 53/244 (21%), Positives = 88/244 (36%), Gaps = 24/244 (9%)

Query: 9   SRNVSQEDADISLLRPR-TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLF 59
           S  V +E  + + + P+ T E+     EA   ++  +E      E   H        +L 
Sbjct: 169 SEPVKEEVIERARMIPKVTWEDIGDLEEAKQKIREIVELPLKHPELFKHLGIEPPKGILL 228

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFI 111
            GPPG GKT LA+ +A E+G  F + +GP I           L  +    E     ++FI
Sbjct: 229 HGPPGTGKTLLAKALANEIGAYFTAINGPEIMSKFYGESEQRLREIFEEAERNAPAIIFI 288

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DEI  ++   EE     +       +V +  +         +  +I AT R   L   L+
Sbjct: 289 DEIDSIAPKREE-----VTGEVEKRVVAQLLALMDGLKERGKVIVIGATNRPEALDPALR 343

Query: 172 D--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
              RF   I +   +    + I+    +   L    +      M    T      L++  
Sbjct: 344 RPGRFDREIEIPPPDKRARREILAVHTRNMPLEEDVDLDKIAEMTHGYTGADLAALVKEA 403

Query: 230 RDFA 233
              A
Sbjct: 404 AMAA 407



 Score = 55.9 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 58/241 (24%), Positives = 85/241 (35%), Gaps = 23/241 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
              +  G  +    L+  +E      E        A   +L  GPPG GKT LA+ VA E
Sbjct: 461 RWSDIGGLEDVKQQLREAVEWPMKHPEVFEQMGIEAPKGILLFGPPGTGKTLLAKAVATE 520

Query: 78  LGVNFRSTSGPVI--AKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAM 129
            G NF +  GP I     G+    +  +  R       V+F DEI  ++       Y   
Sbjct: 521 SGANFIAVRGPEILSKWVGESEKAIRQIFRRARQVAPAVVFFDEIDSIAPARG---YRHD 577

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                D +V +  +       L +  +IAAT R  +L   L    RF   I +   + + 
Sbjct: 578 TSGVTDRIVNQLLTELDGIEPLRKVVVIAATNRPDILDPALLRPGRFDRLIYVPPPDFKA 637

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSR-GTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
              I +   K   LA  D    E+A R+   T      + R     A     K    E+ 
Sbjct: 638 RIEIFKVHTKKMPLA-PDVDLEELARRTEGYTGADIAAVCREAAILALREEFKVRPVEMK 696

Query: 247 D 247
            
Sbjct: 697 H 697


>gi|186492938|ref|NP_001117544.1| AAA-type ATPase family protein [Arabidopsis thaliana]
 gi|332196077|gb|AEE34198.1| P-loop containing nucleoside triphosphate hydrolase-like protein
           [Arabidopsis thaliana]
          Length = 827

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 54/285 (18%), Positives = 98/285 (34%), Gaps = 44/285 (15%)

Query: 9   SRNVSQEDADISLLRPR---------TLEEFTGQVEACSNLKVFIEAAKARAE------- 52
           +  V+ ++     +RP          T ++     E   +L+  +     R +       
Sbjct: 491 APEVAPDNEFEKRIRPEVIPAEEINVTFKDIGALDEIKESLQELVMLPLRRPDLFTGGLL 550

Query: 53  -ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLED 105
                +L  GPPG GKT LA+ +A+E G +F + S   I          ++ AL T    
Sbjct: 551 KPCRGILLFGPPGTGKTMLAKAIAKEAGASFINVSMSTITSKWFGEDEKNVRALFTLASK 610

Query: 106 --RDVLFIDEIH-----RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIA 158
               ++F+DE+      R  +   E +     +F              +     R  ++A
Sbjct: 611 VSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFM-------SHWDGLMTKPGERILVLA 663

Query: 159 ATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGT 218
           AT R   L   +  RF   I +    +E+ + I+ R          +    E+AM + G 
Sbjct: 664 ATNRPFDLDEAIIRRFERRIMVGLPAVENREKIL-RTLLAKEKVDENLDYKELAMMTEGY 722

Query: 219 PRIAGRLL------RRVRDFAEVAHAKTITREIADAALLRLAIDK 257
                + L      R VR+  +    K   ++           D+
Sbjct: 723 TGSDLKNLCTTAAYRPVRELIQQERIKDTEKKKQREPTKAGEEDE 767


>gi|325955317|ref|YP_004238977.1| anti-sigma H sporulation factor, LonB [Weeksella virosa DSM 16922]
 gi|323437935|gb|ADX68399.1| anti-sigma H sporulation factor, LonB [Weeksella virosa DSM 16922]
          Length = 802

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 78/207 (37%), Gaps = 41/207 (19%)

Query: 27  LEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRST 85
           L++   +     +L V     K + +    +L   GPPG+GKT+L + +A  +G  +   
Sbjct: 345 LDDV--KNRIIEHLAVL----KLKGDMRSPILCLYGPPGVGKTSLGKSIAEAIGRKYVRM 398

Query: 86  SGPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRL--------SIIV 121
           S   +    ++                           V  +DEI ++        S  +
Sbjct: 399 SLGGLHDESEIRGHRKTYIGAMPGRIIQSIKKAGSSNPVFVLDEIDKMSISAHGDPSSAM 458

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
            E+L P       D  +  G        ++S+   +A    +G + +PL+DR  + I ++
Sbjct: 459 LEVLDPEQNTSFYDNYLEIGY-------DISKVFFVATANNIGNIPSPLRDRMEM-INIS 510

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAA 208
            Y IE+   IV+R   L    + D   
Sbjct: 511 GYTIEEKVEIVKR--HLLPKQIEDHGM 535


>gi|269925653|ref|YP_003322276.1| ATP-dependent protease La [Thermobaculum terrenum ATCC BAA-798]
 gi|269789313|gb|ACZ41454.1| ATP-dependent protease La [Thermobaculum terrenum ATCC BAA-798]
          Length = 808

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 54/258 (20%), Positives = 88/258 (34%), Gaps = 38/258 (14%)

Query: 15  EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           E   +  LR + +   +GQ        +   +     E +  + FVGPPG+GKT+L Q +
Sbjct: 339 EHLAVRKLREQRVSNLSGQEGTGEQNTIPSGSGDTLREPI--LCFVGPPGVGKTSLGQSI 396

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLS 118
           AR LG  F   S   I    ++                           V  +DEI +++
Sbjct: 397 ARALGRKFIRMSLGGIRDEAEIRGHRRTYIGAMPGRIIQGMRRVGTKDPVFMLDEIDKIT 456

Query: 119 IIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           +  +        E+L PA     +D  +G       V  +LS+   IA    +  +  PL
Sbjct: 457 VGFQGDPAAALLEVLDPAQNHSFVDNYLG-------VPFDLSQVLFIATANTLDTIPAPL 509

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
            DR  +     + E E L       A+   +     A        R T     +++R   
Sbjct: 510 LDRMEVIQISGYTEQEKLF-----IAQRYLIPKQMRAHGIQDSELRFTEESIRKIIREYT 564

Query: 231 DFAEVAHAKTITREIADA 248
             A V +       I   
Sbjct: 565 QEAGVRNLDRQIATICRK 582


>gi|167761264|ref|ZP_02433391.1| hypothetical protein CLOSCI_03669 [Clostridium scindens ATCC 35704]
 gi|167660930|gb|EDS05060.1| hypothetical protein CLOSCI_03669 [Clostridium scindens ATCC 35704]
          Length = 648

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 72/312 (23%), Positives = 119/312 (38%), Gaps = 34/312 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEA-------LDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ EA  +L+  ++      +            L VGPPG GKT LA+ VA E 
Sbjct: 170 TFKDVAGQDEAKESLQEVVDFLHNPGKYTSVGAKLPKGALLVGPPGTGKTLLAKAVAGEA 229

Query: 79  GVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
            V F S SG            ++  DL      +    ++FIDEI  +    +  L    
Sbjct: 230 KVPFFSLSGSAFVEMYVGVGASRVRDLFKQAQQMAP-CIIFIDEIDAIGKSRDNQLGSND 288

Query: 130 E-DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           E +  L+ ++ E     S K  +    L+AAT R  +L   L  R G   R    E  DL
Sbjct: 289 EREQTLNQLLAEMDGFESNKGLV----LLAATNRPEILDPALL-RPGRFDRRIIVEKPDL 343

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAM---RSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           K  V     +  +   D    E       +  T    G  L  + + A +   K   + +
Sbjct: 344 KGRV----DVLKVHSKDVRMDETVDLEAIALATSGAVGSDLANMINEAAINAVKNGRKAV 399

Query: 246 ADAAL-LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE--DLIEP 302
           + A L   + +  +G ++ D        R      VG   + + L +  + ++   ++  
Sbjct: 400 SQADLFEAVEVVLVGKEKKDRIMSQEERRIVSYHEVG-HALVSALQKDAEPVQKITIVPR 458

Query: 303 YMIQQGFIQRTP 314
            M   G++ +TP
Sbjct: 459 TMGALGYVMQTP 470


>gi|157415423|ref|YP_001482679.1| DNA polymerase III subunits gamma and tau [Campylobacter jejuni
           subsp. jejuni 81116]
 gi|157386387|gb|ABV52702.1| DNA polymerase III, gamma/tau subunits [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|307748065|gb|ADN91335.1| DNA polymerase III subunits gamma and tau [Campylobacter jejuni
           subsp. jejuni M1]
 gi|315932303|gb|EFV11246.1| DNA polymerase III, subunits gamma and tau [Campylobacter jejuni
           subsp. jejuni 327]
          Length = 509

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 52/235 (22%), Positives = 86/235 (36%), Gaps = 27/235 (11%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     RP+T +E  GQ     +LK  +         L H  LF G  G GKT+ A++ +
Sbjct: 4   ALAIKYRPKTFDELIGQKTVSVSLKYAL-----NHNRLAHAYLFSGLRGSGKTSSARIFS 58

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHR-----LSIIVEEILY-P 127
           R L        GP     G     L  LE +  D++ +D         +  ++E+  Y P
Sbjct: 59  RALVCE----QGPSDTPCGTCKHCLAALEGKHIDIIEMDAASNRGLEDIQALIEQTKYTP 114

Query: 128 AMEDFQLDLMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
           +M  F++ ++               ++++   S    I ATT    L   +  R      
Sbjct: 115 SMARFKIFIIDEVHMLTPQAANALLKTLEEPPSYVKFILATTDPLKLPATVLSRTQHFRF 174

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
               + E L   ++       +   +EA   IA    G+ R    LL +   F +
Sbjct: 175 KQIPQSEIL-NHLKEILLKENVKFEEEALKFIARSGNGSLRDTLTLLDQAIIFCQ 228


>gi|154248858|ref|YP_001409683.1| ATP-dependent metalloprotease FtsH [Fervidobacterium nodosum
           Rt17-B1]
 gi|154152794|gb|ABS60026.1| ATP-dependent metalloprotease FtsH [Fervidobacterium nodosum
           Rt17-B1]
          Length = 614

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 88/246 (35%), Gaps = 23/246 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE-------ALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  EA   LK  +E  K   +           +L VGPPG GKT LA+ VA E 
Sbjct: 158 TFKDVAGVDEAVEELKETVEFLKNPGKFTKIGARMPKGILLVGPPGTGKTLLARAVAGEA 217

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F   SG       V   A  +  L    +     ++FIDEI  +       L    +
Sbjct: 218 NVPFFHISGSDFVELFVGVGAARVRDLFEQAKANSPCIVFIDEIDAVGRHRGAGLGGGHD 277

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E       +       ++AAT R  +L   L    RF   + ++  +++
Sbjct: 278 EREQTLNQLLVEMDGFDVNQA----IVVMAATNRPDILDPALLRPGRFDKKVVVDPPDVK 333

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++   +   +    + +      +         L+      A       I     
Sbjct: 334 GREAILKIHLRNKPIDKDVDVSVLAKRTTGFVGADLENLVNEAALLAARDGRNVIKMNDF 393

Query: 247 DAALLR 252
           + A+ R
Sbjct: 394 EEAIDR 399


>gi|27735209|sp|P93655|LONM1_ARATH RecName: Full=Lon protease homolog 1, mitochondrial; Flags:
           Precursor
 gi|20259500|gb|AAM13870.1| putative Lon protease homolog 2 precursor [Arabidopsis thaliana]
 gi|21436459|gb|AAM51430.1| putative Lon protease homolog 2 precursor [Arabidopsis thaliana]
 gi|332006234|gb|AED93617.1| lon protease 1 [Arabidopsis thaliana]
          Length = 940

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 68/369 (18%), Positives = 124/369 (33%), Gaps = 66/369 (17%)

Query: 11  NVSQEDADISLLRPRTL--EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGK 67
           N S E+ D++  R +T+  E+  G  +    +  FI   + R  +   ++   GPPG+GK
Sbjct: 413 NYSNENFDVA--RAQTILDEDHYGLSDVKERILEFIAVGRLRGTSQGKIICLSGPPGVGK 470

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED----------------RDVLFI 111
           T++ + +AR L   F   S   +A   ++                           ++ I
Sbjct: 471 TSIGRSIARALNRKFFRFSVGGLADVAEIKGHRRTYVGAMPGKMVQCLKSVGTANPLVLI 530

Query: 112 DEIHRLSI--------IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
           DEI +L           + E+L P      LD           V I+LS+   +     +
Sbjct: 531 DEIDKLGRGHAGDPASALLELLDPEQNANFLD-------HYLDVTIDLSKVLFVCTANVI 583

Query: 164 GLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAG 223
            ++ NPL DR  +     +   E +       A+                +   +     
Sbjct: 584 DMIPNPLLDRMEVISIAGYITDEKVH-----IARDYLEKTARGDCGVKPEQVEVSDAALL 638

Query: 224 RLLRRVRDFAEVAH-AKTITREIADAALLRLAID------KMGFDQLDLRYLTMIARNFG 276
            L+      A V +  K I +     AL  +          +  D  +   +  +  +  
Sbjct: 639 SLIENYCREAGVRNLQKQIEKIYRKIALKLVREGAVPEEPAVASDPEEAEIVADVGESIE 698

Query: 277 GGPVGIETISAGL--SEPRDAIEDLIEPYMI---------------QQGFIQRTPRGRLL 319
              V   T+S+     E     +  IE  MI                +   ++TP G ++
Sbjct: 699 NHTVEENTVSSAEEPKEEAQTEKIAIETVMIDESNLADYVGKPVFHAEKLYEQTPVG-VV 757

Query: 320 MPIAWQHLG 328
           M +AW  +G
Sbjct: 758 MGLAWTSMG 766


>gi|325968458|ref|YP_004244650.1| ATPase AAA [Vulcanisaeta moutnovskia 768-28]
 gi|323707661|gb|ADY01148.1| AAA family ATPase, CDC48 subfamily [Vulcanisaeta moutnovskia
           768-28]
          Length = 737

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 61/290 (21%), Positives = 98/290 (33%), Gaps = 39/290 (13%)

Query: 1   MMDRE-GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAE------- 52
           ++D +  L+      E+ +I  +   T E+     EA   ++  +E      E       
Sbjct: 160 LIDEDTNLMIYEKPVENINIPRI---TWEDIGDLKEAKEKIRELVELPLKHPEIFEYLGI 216

Query: 53  -ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLED 105
                VL +GPPG GKT LA+ VA E    F + +GP I           L  +    + 
Sbjct: 217 EPPKGVLLIGPPGTGKTLLAKAVATETNAYFIAINGPEIVSKYYGESEAKLREIFEEAKK 276

Query: 106 R--DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
               ++FIDEI  ++   EE+     +     L+               +  +I AT R 
Sbjct: 277 NAPAIIFIDEIDAIAPKREEVTGEVEKRIVAQLLT-----LMDGLQERGQVIVIGATNRP 331

Query: 164 GLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRI 221
             +   L+   RF   I +N  + E    I+Q   +   LA   +      +    T   
Sbjct: 332 EAVDPALRRPGRFDREIWINPPDTEGRYEILQVHTRNMPLAKDVDLRKLAEVTYGYTGAD 391

Query: 222 AGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMI 271
              L R     A               AL    +D    D+   + L  I
Sbjct: 392 IAALAREAAMRA------------LRKALQSGILDVNKEDEEIRKDLEKI 429



 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 58/251 (23%), Positives = 93/251 (37%), Gaps = 27/251 (10%)

Query: 24  PR-TLEEFTGQVEACSNLKVFIE--------AAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           P+    +  G  E    LK  IE          K        +L  GPPG GKT LA+ V
Sbjct: 456 PKVRWSDIGGLEEVKQELKEAIEWPLKYPERFRKMGIRPPKGILLFGPPGTGKTLLAKAV 515

Query: 75  ARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILY 126
           A E   NF +  GP I     G+    +  +  +       V+F DEI  ++        
Sbjct: 516 ATESNANFIAVRGPEILSKWFGESERAIREIFKKARMAAPCVIFFDEIDAIAPAR----G 571

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
            A +   +D +V +  +       L    +IAAT R  ++   L    RF   I +   +
Sbjct: 572 YAEDSPAMDRIVAQLLAEMDGVSRLDNVVVIAATNRPDIVDPALLRPGRFDRIIYVPPPD 631

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR---VRDFAEVAHAKTI 241
           +     I++   K   LA  D    E+A  + G       +L R   +    E+  A  +
Sbjct: 632 LRARFEILKIHTKNMPLAR-DVDLEELAKMTEGYTGADIEILTREAGLLAMREINGAGEV 690

Query: 242 TREIADAALLR 252
           + +    A+ +
Sbjct: 691 SMKHFIDAMKK 701


>gi|302760221|ref|XP_002963533.1| hypothetical protein SELMODRAFT_30423 [Selaginella moellendorffii]
 gi|300168801|gb|EFJ35404.1| hypothetical protein SELMODRAFT_30423 [Selaginella moellendorffii]
          Length = 928

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 51/301 (16%), Positives = 100/301 (33%), Gaps = 46/301 (15%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI   K +  A+  ++   GPPG+GKT++ + +A+ L   F   S
Sbjct: 366 EDHYGLSDVKERILEFIAVGKLKGTAVGKIICLSGPPGVGKTSIGKSIAKALNRKFFRFS 425

Query: 87  GPVIAKAGDLAALLTNLED----------------RDVLFIDEIHRLSI--------IVE 122
              ++   ++                           ++ IDEI +L           + 
Sbjct: 426 VGGLSDVAEIKGHRRTYVGAMPGKMVQCLKSTGTANPLVLIDEIDKLGRGHAGDPASALL 485

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V I+LS+   +     V  +  PL DR  +   + +
Sbjct: 486 ELLDPEQNANFLD-------HYLDVPIDLSKVLFVCTANLVENIPAPLLDRMEVIRLVGY 538

Query: 183 YEIEDLK---TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH-A 238
              E +      ++R A+       ++     +            L+      A V +  
Sbjct: 539 ITDEKMHIARDYLERQARENCGIKKEQVELSDSAMH--------SLIETYCREAGVRNLQ 590

Query: 239 KTITREIADAALL--RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAI 296
           K I +     AL   R  +D    +++    L  +A            ++    +  + +
Sbjct: 591 KHIDKIYRKIALKLVRRELDTPKEEEMKQNNLVTVAETKSNAEDMAIKLTDSAVQEGETL 650

Query: 297 E 297
           E
Sbjct: 651 E 651


>gi|262184140|ref|ZP_06043561.1| DNA polymerase III subunits gamma and tau [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 854

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 76/220 (34%), Gaps = 23/220 (10%)

Query: 30  FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP- 88
             GQ +  + L   ++A +         LF GP G GKT+ A+++AR L      TS P 
Sbjct: 1   MVGQEQVTTPLSAALDAGRINHAY----LFSGPRGCGKTSSARIMARSLNCEQGPTSTPC 56

Query: 89  -VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PAMEDFQLDLM---- 137
            V      LA       + DV  +D      +     L       PA   +++ ++    
Sbjct: 57  GVCDSCVSLAP--GGPGNLDVTELDAASHNGVEDMRELRDRAYYAPAESRYRIFIIDEAH 114

Query: 138 ----VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
                G     + V+        I ATT    +   ++ R              +K +++
Sbjct: 115 MISASGANALLKVVEEPPEHVIFIFATTEPEKIIGTIRSR-THHYPFRLLTPPAMKGLLE 173

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
           R      + V D     +     G+PR    +L ++   A
Sbjct: 174 RTVASENVHVDDTVYPMVIQAGGGSPRDTLSILDQLLAGA 213


>gi|261204417|ref|XP_002629422.1| ATP-dependent protease La [Ajellomyces dermatitidis SLH14081]
 gi|239587207|gb|EEQ69850.1| ATP-dependent protease La [Ajellomyces dermatitidis SLH14081]
          Length = 1081

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 48/254 (18%), Positives = 91/254 (35%), Gaps = 37/254 (14%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI   K R      +L FVGPPG+GKT++ + +AR L   +   S
Sbjct: 540 EDHYGLKDVKDRILEFIAVGKLRGTVEGKILCFVGPPGVGKTSIGKSIARALNREYYRFS 599

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ ++    +        
Sbjct: 600 VGGLTDVAEIKGHRRTYVGALPGRVIQALKKCQTENPLILIDEVDKIGRGHQGDPASALL 659

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V ++LS+   +        +  PL DR  + I L+ 
Sbjct: 660 ELLDPEQNSSFLD-------HYMDVPVDLSKVLFVCTANMTDTIPRPLLDRMEM-IELSG 711

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  ++   I +R          + +  + A  +     I   L++     + V + K   
Sbjct: 712 YVADEKMAIAER---YLAPTAKEMSGLKNADVTLEKDAI-EELIKSYCRESGVRNLKKQI 767

Query: 243 REIADAALLRLAID 256
            ++   A L++  D
Sbjct: 768 EKVYRKAALKIIQD 781


>gi|70995044|ref|XP_752288.1| AAA family ATPase/60S ribosome export protein Rix7 [Aspergillus
           fumigatus Af293]
 gi|66849923|gb|EAL90250.1| AAA family ATPase/60S ribosome export protein Rix7, putative
           [Aspergillus fumigatus Af293]
 gi|159131044|gb|EDP56157.1| AAA family ATPase/60S ribosome export protein Rix7, putative
           [Aspergillus fumigatus A1163]
          Length = 784

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 56/277 (20%), Positives = 92/277 (33%), Gaps = 23/277 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
           +L +  G  +   +L   +     R +            VL  GPPG GKT +A   A E
Sbjct: 218 SLADLGGLDDVIQSLGDLLILPMTRPQVFVSSNVQPPRGVLLHGPPGCGKTMIANAFAAE 277

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
           LGV F   S P I           L       +     ++FIDEI  ++    E     M
Sbjct: 278 LGVPFIPISAPSIVSGMSGESEKALREHFEEAKRLAPCLIFIDEIDAITPKR-ESAQREM 336

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
           E   +  ++         K +     ++AAT R   L   L+   RF   I +       
Sbjct: 337 EKRIVAQLLTCMDDLALDKTDGKPVIVLAATNRPDSLDAALRRGGRFDKEINMTVPSEPV 396

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            + I+ R          D     +A R+ G        L      A +     + +  + 
Sbjct: 397 REQIL-RALTRKMRLADDLDFKTLAKRTPGFVGADLNDLVSTAGSAAIKRYLELLKSNSG 455

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIET 284
             +    +D +      ++ L  +  +    P+G ET
Sbjct: 456 EEMDIEDLDDL---SPKVKELRRLINHAKETPLGDET 489



 Score = 52.8 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 50/235 (21%), Positives = 79/235 (33%), Gaps = 24/235 (10%)

Query: 32  GQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARELGVNFR 83
           GQ      L   I  A    E        A   VL  GPPG GKT LA+ VA E   NF 
Sbjct: 530 GQ--IREELNTAIVDAIKSPELYANVGITAPTGVLLWGPPGCGKTLLAKAVANESRANFI 587

Query: 84  STSGPVIAK--AGDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           S  GP +     G+    +  +  R       ++F DE+  L    ++ L  A       
Sbjct: 588 SVKGPELLNKFVGESERAVRQVFVRARSSVPCIIFFDELDALVPRRDDALSEASARVVNT 647

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQ 193
           L+        S +       +IAAT R  ++   +    R    + ++     +   I++
Sbjct: 648 LLTELDGLGSSRQG----IYVIAATNRPDIIDPAMLRPGRLETLLYVSLPNPLERVEILK 703

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
              +   +   ++           +    G LLRR    A     +    +   A
Sbjct: 704 TLVRKLPIEFNEDMRRLAEECEGFSGADLGSLLRRAGYSAIKRRDQISFEDFVAA 758


>gi|319898354|ref|YP_004158447.1| DNA polymerase III gamma and tau subunit [Bartonella clarridgeiae
           73]
 gi|319402318|emb|CBI75857.1| DNA polymerase III gamma and tau subunit [Bartonella clarridgeiae
           73]
          Length = 634

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 48/255 (18%), Positives = 86/255 (33%), Gaps = 25/255 (9%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+   +  GQ      L    +  +         +  G  G+GKTT A+++AR L
Sbjct: 18  ARKYRPQNFSDLIGQEAMVCTLNNAFKTGRIAQAW----MLTGIRGVGKTTTARILARAL 73

Query: 79  GVNFRSTSGPV--IAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
               +    P     K G+    +      DV+ +D      I  +  I+E+I Y  +  
Sbjct: 74  NYKTKDIDQPTTLFDKLGEHCTQIIEGRHMDVIEMDAASHTGIDDIREIIEQIRYRPISA 133

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT +  +   +  R      L  
Sbjct: 134 RYKVYIIDEVHMLSTQAFNGLLKTLEEPPPHVKFIFATTEIRKVPITILSRCQ-RFNLQR 192

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            E   L   +++ A+L  + V D+A   IA  + G+ R A  +     D A       + 
Sbjct: 193 IETAVLVNHLRQIAQLEEIEVQDQALFVIARAAEGSVRDALSIF----DQAIAHGNGKVD 248

Query: 243 REIADAALLRLAIDK 257
                  L      +
Sbjct: 249 AIAVRIMLGLTDQSR 263


>gi|315082721|gb|EFT54697.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL027PA2]
          Length = 717

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 64/276 (23%), Positives = 96/276 (34%), Gaps = 26/276 (9%)

Query: 24  PR-TLEEFTGQVEACSNLKVFIE-----AAKARAEA--LDHVLFVGPPGLGKTTLAQVVA 75
           P+ T  +  G  EA   L+   E     A   R  A     VL  GPPG GKT LA+ VA
Sbjct: 162 PKSTFADVAGCQEAIDELQEIREFLAEPAKFQRVGAKIPKGVLLYGPPGTGKTLLARAVA 221

Query: 76  RELGVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
            E GV F S SG            ++  DL           ++FIDEI  +       + 
Sbjct: 222 GEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKEAAP-AIIFIDEIDAVGRHRGAGMG 280

Query: 127 PAMEDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNF 182
              ++ +  L  ++ E               LIAAT R  +L   L    RF   I +  
Sbjct: 281 GGHDEREQTLNQLLVEMDGFDVHGG----VILIAATNRPDVLDPALLRPGRFDRQIAVEA 336

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            +++    I++  A    +A   + A         T      +L         A+   I 
Sbjct: 337 PDLDGRLKILKVHAHGKPMADDVDLASIARRTPGMTGADLANVLNEAALLTARANLPVIG 396

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
               D A+ R+        +L   +  ++     GG
Sbjct: 397 NSELDEAIDRVIAGPQKKTRLMNEHERLVTAYHEGG 432


>gi|313768216|ref|YP_004061896.1| hypothetical protein MpV1_013c [Micromonas sp. RCC1109 virus MpV1]
 gi|312598912|gb|ADQ90936.1| hypothetical protein MpV1_013c [Micromonas sp. RCC1109 virus MpV1]
          Length = 586

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 59/267 (22%), Positives = 96/267 (35%), Gaps = 22/267 (8%)

Query: 27  LEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTS 86
           LEE           + F   AK    A    L  G PG GKT LA+ +A E  V F   S
Sbjct: 158 LEEIV--DFLKKPERYFGSGAKIPRGA----LLAGAPGTGKTLLARAIAGESNVPFIQCS 211

Query: 87  GP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDL-- 136
                   V   A  +  L          ++FIDEI  +         P+ ++ +  +  
Sbjct: 212 AANFVEMFVGVGAKRVRELFEQARANQPCIVFIDEIDAVGKKRSAGGMPSNDEREQTINQ 271

Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQR 194
           ++ E     +         +IAAT RV +L + L    RF   I++    ++  + I+  
Sbjct: 272 LLTEMDGFDNETG----IVVIAATNRVDILDDALLRPGRFDRKIQVTLPSVQGRRKILGV 327

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A+   L  T + A      +  +      LL      A       IT +I +    R+ 
Sbjct: 328 HARDKTLDDTVDLANIAKQTTGFSGADLANLLNECAIRAVRDGDGIITNDIVENVYQRVV 387

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVG 281
           +   G  +  LR   ++A +  G  + 
Sbjct: 388 VGAKGDVKFSLRKKELVAYHEAGHAIM 414


>gi|313793175|gb|EFS41242.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL110PA1]
 gi|315078396|gb|EFT50427.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL053PA2]
 gi|327457122|gb|EGF03777.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL092PA1]
          Length = 717

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 64/276 (23%), Positives = 96/276 (34%), Gaps = 26/276 (9%)

Query: 24  PR-TLEEFTGQVEACSNLKVFIE-----AAKARAEA--LDHVLFVGPPGLGKTTLAQVVA 75
           P+ T  +  G  EA   L+   E     A   R  A     VL  GPPG GKT LA+ VA
Sbjct: 162 PKSTFADVAGCQEAIDELQEIREFLAEPAKFQRVGAKIPKGVLLYGPPGTGKTLLARAVA 221

Query: 76  RELGVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
            E GV F S SG            ++  DL           ++FIDEI  +       + 
Sbjct: 222 GEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKEAAP-AIIFIDEIDAVGRHRGAGMG 280

Query: 127 PAMEDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNF 182
              ++ +  L  ++ E               LIAAT R  +L   L    RF   I +  
Sbjct: 281 GGHDEREQTLNQLLVEMDGFDVHGG----VILIAATNRPDVLDPALLRPGRFDRQIAVEA 336

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            +++    I++  A    +A   + A         T      +L         A+   I 
Sbjct: 337 PDLDGRLKILKVHAHGKPMADDVDLASIARRTPGMTGADLANVLNEAALLTARANLPVIG 396

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
               D A+ R+        +L   +  ++     GG
Sbjct: 397 NSELDEAIDRVIAGPQKKTRLMNEHERLVTAYHEGG 432


>gi|302799579|ref|XP_002981548.1| hypothetical protein SELMODRAFT_30426 [Selaginella moellendorffii]
 gi|300150714|gb|EFJ17363.1| hypothetical protein SELMODRAFT_30426 [Selaginella moellendorffii]
          Length = 928

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 51/301 (16%), Positives = 100/301 (33%), Gaps = 46/301 (15%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI   K +  A+  ++   GPPG+GKT++ + +A+ L   F   S
Sbjct: 365 EDHYGLSDVKERILEFIAVGKLKGTAVGKIICLSGPPGVGKTSIGKSIAKALDRKFFRFS 424

Query: 87  GPVIAKAGDLAALLTNLED----------------RDVLFIDEIHRLSI--------IVE 122
              ++   ++                           ++ IDEI +L           + 
Sbjct: 425 VGGLSDVAEIKGHRRTYVGAMPGKMVQCLKSTGTANPLVLIDEIDKLGRGHAGDPASALL 484

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V I+LS+   +     V  +  PL DR  +   + +
Sbjct: 485 ELLDPEQNANFLD-------HYLDVPIDLSKVLFVCTANLVENIPAPLLDRMEVIRLVGY 537

Query: 183 YEIEDLK---TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH-A 238
              E +      ++R A+       ++     +            L+      A V +  
Sbjct: 538 ITDEKMHIARDYLERQARENCGIKKEQVELSDSAMH--------SLIETYCREAGVRNLQ 589

Query: 239 KTITREIADAALL--RLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAI 296
           K I +     AL   R  +D    +++    L  +A            ++    +  + +
Sbjct: 590 KHIDKIYRKIALKLVRRELDTPKEEEMKQNNLVTVAETKSNAEDMAIKLTDSAVQEGETL 649

Query: 297 E 297
           E
Sbjct: 650 E 650


>gi|303276735|ref|XP_003057661.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226460318|gb|EEH57612.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 917

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 62/253 (24%), Positives = 95/253 (37%), Gaps = 41/253 (16%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           EE  G       +  ++   + R +A   +L F GPPG+GKTTLA+ +A+ L   F+  S
Sbjct: 398 EEHYGLDRVKDRIIEYLAVRRLRPDARPPILCFQGPPGVGKTTLARSIAKVLQRPFQRIS 457

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRL--------SIIVE 122
              +    D+                           V+ +DE+ ++        +  + 
Sbjct: 458 LGGVRDEADVRGHRRTYIASMPGRLIQGLKRVGVRDPVMLLDELDKMGSDSRGDPAAAML 517

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P       D  +G       V  +LSR T +A       +  PL+DR  + I +  
Sbjct: 518 EVLDPEQNHAFTDHYMG-------VPFDLSRITFLATANDPRTIPGPLRDRMEM-ITVPG 569

Query: 183 YEIEDLKTIVQRGA--KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           Y  E+   I  R    K+        A  E   R   TPR     LR  RD  E+   ++
Sbjct: 570 YTDEEKLAIACRHVVPKVLEEHGLLHAGREGNNRDANTPR-----LRIPRDAVELV-VRS 623

Query: 241 ITREIADAALLRL 253
            TRE     L R 
Sbjct: 624 YTREAGVRGLQRC 636


>gi|224122936|ref|XP_002318953.1| predicted protein [Populus trichocarpa]
 gi|222857329|gb|EEE94876.1| predicted protein [Populus trichocarpa]
          Length = 968

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 55/273 (20%), Positives = 94/273 (34%), Gaps = 42/273 (15%)

Query: 11  NVSQEDADISLLRPRTL--EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGK 67
           N S E+ D+  LR + +  E+  G  +    +  FI   K R  +   ++   GPPG+GK
Sbjct: 428 NYSDENFDV--LRAQKILDEDHYGLTDVKERILEFIAVGKLRGISQGKIICLSGPPGVGK 485

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED----------------RDVLFI 111
           T++ + +AR L   F   S   ++   ++                           ++ I
Sbjct: 486 TSIGRSIARALNRKFFRFSVGGLSDVAEIKGHRRTYIGAMPGKMVQCLKNVGTANPLVLI 545

Query: 112 DEIHRLSI--------IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
           DEI +L           + E+L P      LD           V I++S+   +     +
Sbjct: 546 DEIDKLGRGHTGDPASALLELLDPEQNANFLD-------HYLDVPIDVSKVLFVCTANVL 598

Query: 164 GLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAG 223
             + NPL DR  +     +   E +       A+      T EA      +   T     
Sbjct: 599 DTIPNPLLDRMEVVSIAGYITDEKVH-----IARDYLEKATREACGIKPEQVEVTDAALL 653

Query: 224 RLLRRVRDFAEVAH-AKTITREIADAALLRLAI 255
            L+      A V +  K I +     AL  +  
Sbjct: 654 ALIENYCREAGVRNLQKQIEKIYRKIALQLVRQ 686


>gi|121702141|ref|XP_001269335.1| AAA family ATPase/60S ribosome export protein Rix7, putative
           [Aspergillus clavatus NRRL 1]
 gi|119397478|gb|EAW07909.1| AAA family ATPase/60S ribosome export protein Rix7, putative
           [Aspergillus clavatus NRRL 1]
          Length = 738

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 56/277 (20%), Positives = 89/277 (32%), Gaps = 21/277 (7%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
           +L +  G  +    L   +     R +            VL  GPPG GKT +A   A E
Sbjct: 170 SLADLGGLDDVVQELGDLLILPMTRPQVYMSSNVQPPRGVLLHGPPGCGKTMIANAFAAE 229

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAM 129
           LG+ F   S P I           L       +     ++FIDEI  ++    E     M
Sbjct: 230 LGIPFIPISAPSIVSGMSGESEKALREHFEEAKRIAPCLIFIDEIDAITPKR-ESAQREM 288

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
           E   +  ++         K +     ++AAT R   L   L+   RF   I +       
Sbjct: 289 EKRIVAQLLTCMDDLALDKTDGKPVIVLAATNRPDSLDAALRRGGRFDKEINMTVPSEPV 348

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            + I+ R          D     +A R+ G        L      A +     + +  + 
Sbjct: 349 REQIL-RALTRKMRLADDLDFKTLAKRTPGFVGADLNDLVSTAGSAAIKRYLELLKSNSG 407

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIET 284
             +     D  G     ++ L  +  +    P G ET
Sbjct: 408 EEMDIETPDDDGLSPK-VKELRRLIVHAKEMPAGDET 443



 Score = 52.0 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 54/236 (22%), Positives = 86/236 (36%), Gaps = 20/236 (8%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD--- 107
           A   VL  GPPG GKT LA+ VA E   NF S  GP +     G+    +  +  R    
Sbjct: 511 APTGVLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKFVGESERAVRQVFVRARSS 570

Query: 108 ---VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164
              V+F DE+  L    ++ L  A       L+        S +       +IAAT R  
Sbjct: 571 VPCVIFFDELDALVPRRDDTLSEASARVVNTLLTELDGLGSSRQG----IFVIAATNRPD 626

Query: 165 LLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
           ++   +    R    + +N     +   I+Q   +   +   ++           +    
Sbjct: 627 IIDPAMLRPGRLETLLFVNLPSPLERADILQTLVRKLPIEFNEDLRRLAEECEGFSGADL 686

Query: 223 GRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
           G LLRR   ++ +     I  E   AA   +          DL+    + R++ GG
Sbjct: 687 GSLLRRA-GYSAIKRRDAIKFEDFVAAKAFIRP-----SVTDLKKYEKLRRDWSGG 736


>gi|326784524|ref|YP_004324985.1| clamp loader subunit [Prochlorococcus phage P-SSM7]
 gi|310004557|gb|ADO98949.1| clamp loader subunit [Prochlorococcus phage P-SSM7]
          Length = 332

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 41/157 (26%), Positives = 72/157 (45%), Gaps = 17/157 (10%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
            +   RP+T+E+     +  S  K F++  +     + ++L  G  G+GKTT+A+ +  E
Sbjct: 25  WVEKYRPKTIEDCILPTDVKSTFKGFVDQGE-----IPNLLLSGTAGVGKTTIAKALCNE 79

Query: 78  LGVNFRSTSGP--------VIAKAGDLAAL--LTNLEDRDVLFIDEIHRLSIIVEEILYP 127
           LGV+    +G         V  +A   AA   LT+     VL IDE    +  V+ +L  
Sbjct: 80  LGVDSYVINGSDEGRFLDTVRNQAKSFAATVSLTSTSRHKVLIIDEADNTTADVQLLLRA 139

Query: 128 AMEDFQLD--LMVGEGPSARSVKINLSRFTLIAATTR 162
           ++E+FQ +   +       + ++   SR T+I    R
Sbjct: 140 SIEEFQKNCRFIFTCNFKNKIIEPLHSRTTVIDFNVR 176


>gi|256810701|ref|YP_003128070.1| AAA family ATPase, CDC48 subfamily [Methanocaldococcus fervens
           AG86]
 gi|256793901|gb|ACV24570.1| AAA family ATPase, CDC48 subfamily [Methanocaldococcus fervens
           AG86]
          Length = 903

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 67/306 (21%), Positives = 99/306 (32%), Gaps = 50/306 (16%)

Query: 15  EDADISLLR------PR-TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLF 59
           +D + S +R      P    E+  G  E    L+  +E      E            VL 
Sbjct: 432 KDVEPSAMREVLVEVPNVKWEDIGGLEEVKQELREAVEWPLKAKEVFEKIGVRPPKGVLL 491

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFI 111
            GPPG GKT LA+ VA E G NF S  GP I           +  +          ++F 
Sbjct: 492 FGPPGTGKTLLAKAVANESGANFISVKGPEIFSKWVGESEKAIREIFRKARQSAPCIIFF 551

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPL- 170
           DEI  ++      L  A+ D  ++ ++ E       K       +IAAT R  ++   L 
Sbjct: 552 DEIDAIAPKRGRDLSSAVTDKVVNQLLTELDGMEEPK----DVVVIAATNRPDIIDPALL 607

Query: 171 ----QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
                DR  +    +     D+  I  RG  L      +E A +    +         L 
Sbjct: 608 RPGRLDRVILVPVPDEKARLDIFKIHTRGMNLAEDVDLEELAKKTEGYTGADIE---ALC 664

Query: 227 RRVRDFAEVAHAKT-ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETI 285
           R     A           E A   L              + YL  I+  F    V + ++
Sbjct: 665 REAAMLAVRKSIGKPWGIETALRDL--------------INYLQGISGTFRAAAVELNSV 710

Query: 286 SAGLSE 291
                E
Sbjct: 711 IKATKE 716



 Score = 56.2 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 53/197 (26%), Positives = 74/197 (37%), Gaps = 23/197 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAA--------KARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           T E+  G  E    ++  IE          K   E    VL VGPPG GKT LA+ VA E
Sbjct: 177 TYEDIGGLKEEVRKVREMIELPMRHPELFEKLGIEPPKGVLLVGPPGTGKTLLAKAVANE 236

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM 129
            G NF   +GP I          +L  +    E+    ++FIDEI  ++   +E      
Sbjct: 237 AGANFYVINGPEIMSKYVGETEENLRKIFEEAEENAPSIIFIDEIDAIAPKRDEATGEVE 296

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                 L+               +  +I AT R   L   L+   RF   I +   + E 
Sbjct: 297 RRLVAQLLT-----LMDGLKGRGQVVVIGATNRPNALDPALRRPGRFDREIVIGVPDREG 351

Query: 188 LKTIVQRGAKLTGLAVT 204
            K I+Q   +   LA  
Sbjct: 352 RKEILQIHTRNMPLAED 368


>gi|154148048|ref|YP_001406670.1| ATP-dependent Clp protease ATP-binding subunit [Campylobacter
           hominis ATCC BAA-381]
 gi|153804057|gb|ABS51064.1| ATP-dependent CLP protease ATP-binding subunit [Campylobacter
           hominis ATCC BAA-381]
          Length = 729

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 58/247 (23%), Positives = 85/247 (34%), Gaps = 43/247 (17%)

Query: 28  EEFTGQVEACSNL-KVFIE---AAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFR 83
            E  GQ  A   L K  +      K     +   LF G  G+GKT LA+V+A  L V+F 
Sbjct: 447 SEIFGQDSAVDTLYKALLRSYAGIKDENRPIGVFLFTGNSGVGKTELAKVLANSLNVSFL 506

Query: 84  STSGPVIAKAG---------------DLAALLTNLEDR---DVLFIDEIHRLSIIVEEIL 125
                   +                 +   +LTN   +    VL  DEI + +  +  I 
Sbjct: 507 RFDMSEYMEENSVSKFIGSAPGYVGFEQGGILTNAVKKHPYSVLLFDEIEKANPTIINIF 566

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLS--------------RFTLIAATTRVGLLTNP-L 170
               ++  L   +GE    ++  I +S              R T     T V    +P L
Sbjct: 567 LGIFDNASLSDNLGEKADFKNTIIIMSSNLGTKEAATLGFKRDTAEKINTAVHDFFSPEL 626

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVT------DEAACEIAMRSRGTPRIAGR 224
           + R    I  N    E LK IV +  K     +       DE A E  ++         R
Sbjct: 627 RARIDKIINFNPLNNEILKQIVDKYIKNLENKLKNVKFDLDENAKEFLIKKGANTESGAR 686

Query: 225 LLRRVRD 231
            L+R+ D
Sbjct: 687 NLKRIID 693


>gi|152978645|ref|YP_001344274.1| DNA polymerase III subunits gamma and tau [Actinobacillus
           succinogenes 130Z]
 gi|150840368|gb|ABR74339.1| DNA polymerase III, subunits gamma and tau [Actinobacillus
           succinogenes 130Z]
          Length = 699

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 44/242 (18%), Positives = 75/242 (30%), Gaps = 55/242 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+   +  GQ    + L     A   +   L H  LF G  G+GKT++A+++A+ L   
Sbjct: 11  RPQNFHQVIGQEHILTAL-----ANGLKENRLHHAYLFSGTRGVGKTSIARLLAKGLNCI 65

Query: 82  F------------------------RSTSGPVIAKAGDLAALLTNLEDRD------VLFI 111
                                             K  D   LL N++ +       V  I
Sbjct: 66  HGVTAEPCGECEHCKAIENGNFIDLIEIDAASRTKVEDTRELLDNVQYKPVQGRYKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSRHSFNALLKTLEE------------------PPEYVKFLLATTDPQKLPITIL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L     + +   +        +     A  +IA  ++G+ R +  L  +   
Sbjct: 168 SRC-MQFHLKALSQQQIAQHLANILTQEKIPFEPTALGKIAKAAQGSVRDSLSLTDQAIA 226

Query: 232 FA 233
            +
Sbjct: 227 MS 228


>gi|255311138|ref|ZP_05353708.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis
           6276]
 gi|255317439|ref|ZP_05358685.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis
           6276s]
 gi|296435852|gb|ADH18026.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis
           G/9768]
 gi|296436778|gb|ADH18948.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis
           G/11222]
 gi|296437712|gb|ADH19873.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis
           G/11074]
 gi|297140211|gb|ADH96969.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis
           G/9301]
          Length = 466

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 52/270 (19%), Positives = 83/270 (30%), Gaps = 58/270 (21%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
              RP    E  GQ    S LK  +   +A        +F G  G GKTTLA+V A+ L 
Sbjct: 9   RRYRPNNFSEILGQDIVVSILKNSLRLNRAAHAY----IFSGIRGTGKTTLARVFAKALN 64

Query: 80  VNFRS-------------------------TSGPVIAKAGDLAALLTNL------EDRDV 108
               +                           G       D+  +   +          +
Sbjct: 65  CQNPTQDQEPCNQCAICKEISLGTSMDVIEIDGASHRGIEDIRQINETVLFVPSKSRYKI 124

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
             IDE+H L+      L   +E+  +                        ATT +  + N
Sbjct: 125 YIIDEVHMLTKEAFNSLLKTLEEPPV------------------HVKFFLATTEIAKIPN 166

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            +  R    +       E +   +   AK  G   + EA   IA  ++G+ R A  L   
Sbjct: 167 TISSRCQKMLLKRI-SEETIIDKLATIAKQEGTETSREALLPIAKAAQGSLRDAESLYDY 225

Query: 229 VRDFAEVAHAKTITREIADAALLRLAIDKM 258
           V         +++  +    AL  L+ D +
Sbjct: 226 VVGLFP----ESLDPDSTAKALGILSEDSL 251


>gi|124359471|gb|ABN05909.1| Peptidase S26A, signal peptidase I; AAA ATPase; Peptidase M,
           neutral zinc metallopeptidases, zinc-binding site;
           Peptidase M41, FtsH extracellular [Medicago truncatula]
          Length = 569

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 59/274 (21%), Positives = 99/274 (36%), Gaps = 23/274 (8%)

Query: 26  TLEEFTG-----Q--VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T E+  G     Q   E    LK   + +   A+    VL VGPPG GKT LA+ +A E 
Sbjct: 207 TFEDIAGVDEAKQDFQEIVEFLKTPEKFSSVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA 266

Query: 79  GVNFRSTSGPVIA------KAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG           A  +  L    ++    ++FIDEI  +       +    +
Sbjct: 267 KVPFFSLSGSEFIEMFVGVGASRVRDLFNKAKENSPCLVFIDEIDAVGRQRGTGIGGGND 326

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E     S         +IAAT R  +L + L    RF   + +   +I 
Sbjct: 327 EREQTLNQLLTEMDGFNSNTG----VIVIAATNRPEILDSALLRPGRFDRQVTVGLPDIR 382

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++  +    L                +      L+      A     + IT +  
Sbjct: 383 GREEILKVHSNNKKLDKDISLGVIAMRTPGFSGADLANLMNEAAILAGRRQKEKITMKEI 442

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV 280
           D ++ R+     G    D +   ++A +  G  +
Sbjct: 443 DDSIDRIVAGMEGTTMTDGKCKILVAYHEVGHAI 476


>gi|552189|gb|AAA29520.1| cell division cycle ATPase [Plasmodium falciparum]
          Length = 709

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 46/209 (22%), Positives = 74/209 (35%), Gaps = 34/209 (16%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAE--------ALDH 56
           E  L R   +E+ D       T E+  G  +  + ++  IE      E        A   
Sbjct: 131 EEYLKREDYEENNDD-----ITYEDLGGMKKQLNKIRELIELPLKYPEIFMSIGISAPKG 185

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--V 108
           VL  G PG GKT++A+ +A E        +GP I           L  +     ++   +
Sbjct: 186 VLMHGIPGTGKTSIAKAIANESNAYCYIINGPEIMSKHIGESEQKLRKIFKKASEKTPCI 245

Query: 109 LFIDEIH---RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
           +FIDEI             L   +    L LM G   +   +        ++AAT R   
Sbjct: 246 IFIDEIDSIANKRSKSNNELEKRVVSQLLTLMDGLKKNNNVL--------VLAATNRPNS 297

Query: 166 LTNPLQD--RFGIPIRLNFYEIEDLKTIV 192
           +   L+   RF   I +   + +    I+
Sbjct: 298 IDPALRRFGRFDREIEIPVPDEQGRYEIL 326



 Score = 50.1 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 12/121 (9%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           +L  GPPG GKT LA+ +A E   NF S  GP +     G+  A + +L D+       +
Sbjct: 593 ILLYGPPGCGKTLLAKAIANECKANFISVKGPELLTMWFGESEANVRDLFDKARAASPCI 652

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +F DEI  L+            +   D ++ +  +            +IAAT R  +L  
Sbjct: 653 IFFDEIDSLAKERNSN----TNNDASDRVINQILTEIDGINEKKTIFIIAATNRPDILDK 708

Query: 169 P 169
            
Sbjct: 709 A 709


>gi|83315300|ref|XP_730734.1| 26S proteasome subunit P45 [Plasmodium yoelii yoelii str. 17XNL]
 gi|23490548|gb|EAA22299.1| 26S proteasome subunit P45 family, putative [Plasmodium yoelii
           yoelii]
          Length = 475

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 82/248 (33%), Gaps = 20/248 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
           T  +  G  E    L+  +E    + E            VL  GPPG GKT  A+ +A  
Sbjct: 190 TYNDIGGCKEQLEKLREVVEMPLLQPERFVTLGIDPPKGVLLYGPPGTGKTLTARAIANR 249

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
               F    G  +        A  +  L    + +   +LFIDE+  +     +    A 
Sbjct: 250 TDACFICVIGSELVQKYVGEGARLVRELFQMAKSKKACILFIDEVDAIGGSRGDE--SAH 307

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            D ++   + E  +      N     +I AT R   L + L    R    I  +  ++E 
Sbjct: 308 GDHEVQRTMLEIVNQLDGFDNRGNIKVIMATNRPDTLDSALVRPGRIDRKIEFSLPDLEG 367

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
              I +  A    ++          +    T      +      FA  A  KTIT +   
Sbjct: 368 RTHIFKIHANTMNMSRDVRFELLARLCPNSTGSDIRSVCTEAGMFAIRARRKTITEKDLL 427

Query: 248 AALLRLAI 255
            A+ ++  
Sbjct: 428 LAINKVIH 435


>gi|332298399|ref|YP_004440321.1| ATP-dependent metalloprotease FtsH [Treponema brennaborense DSM
           12168]
 gi|332181502|gb|AEE17190.1| ATP-dependent metalloprotease FtsH [Treponema brennaborense DSM
           12168]
          Length = 616

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 57/247 (23%), Positives = 92/247 (37%), Gaps = 25/247 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH-------VLFVGPPGLGKTTLAQVVAREL 78
           T  +  GQ EA + L   I+  K   + LD        +L VG PG GKT LA+ VA E 
Sbjct: 166 TFADVAGQEEAKNELSDVIDFLKNPQKYLDMGAKIPTGILLVGNPGTGKTLLARAVAGEA 225

Query: 79  GVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           GV F   SG            ++  DL      +    ++FIDEI  +       L    
Sbjct: 226 GVAFLHISGSDFVEMFVGVGASRVRDLFEQGRRMAP-AIIFIDEIDAVGRARGAGLGGGH 284

Query: 130 EDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           ++ +  L  M+ E     S         ++AAT R  +L   L    RF   + ++  +I
Sbjct: 285 DEREQTLNQMLVEMDGFESKDG----VIILAATNRPDVLDPALLRPGRFDRQVTVSLPDI 340

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           ++ + I+   A    L    +           +      L+     FA   + + +T   
Sbjct: 341 KEREAILGVHAAKIPLGDDVDLKRVARSTPGMSGADLASLVNEAVLFAAGKNQRNVTSVE 400

Query: 246 ADAALLR 252
            + A  +
Sbjct: 401 FEEARDK 407


>gi|313821991|gb|EFS59705.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL036PA1]
 gi|313824113|gb|EFS61827.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL036PA2]
 gi|313826480|gb|EFS64194.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL063PA1]
 gi|314926566|gb|EFS90397.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL036PA3]
 gi|314961368|gb|EFT05469.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL002PA2]
 gi|314980289|gb|EFT24383.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL072PA2]
 gi|314987373|gb|EFT31464.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL005PA2]
 gi|314989086|gb|EFT33177.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL005PA3]
 gi|315086079|gb|EFT58055.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL002PA3]
 gi|315087665|gb|EFT59641.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL072PA1]
 gi|327333318|gb|EGE75038.1| putative cell division protein [Propionibacterium acnes HL096PA3]
 gi|327445204|gb|EGE91858.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL013PA2]
 gi|332674668|gb|AEE71484.1| cell division protease FtsH [Propionibacterium acnes 266]
          Length = 717

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 64/276 (23%), Positives = 96/276 (34%), Gaps = 26/276 (9%)

Query: 24  PR-TLEEFTGQVEACSNLKVFIE-----AAKARAEA--LDHVLFVGPPGLGKTTLAQVVA 75
           P+ T  +  G  EA   L+   E     A   R  A     VL  GPPG GKT LA+ VA
Sbjct: 162 PKSTFADVAGCQEAIDELQEIREFLAEPAKFQRVGAKIPKGVLLYGPPGTGKTLLARAVA 221

Query: 76  RELGVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
            E GV F S SG            ++  DL           ++FIDEI  +       + 
Sbjct: 222 GEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKEAAP-AIIFIDEIDAVGRHRGAGMG 280

Query: 127 PAMEDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNF 182
              ++ +  L  ++ E               LIAAT R  +L   L    RF   I +  
Sbjct: 281 GGHDEREQTLNQLLVEMDGFDVHGG----VILIAATNRPDVLDPALLRPGRFDRQIAVEA 336

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            +++    I++  A    +A   + A         T      +L         A+   I 
Sbjct: 337 PDLDGRLKILKVHAHGKPMADDVDLASIARRTPGMTGADLANVLNEAALLTARANLPVIG 396

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
               D A+ R+        +L   +  ++     GG
Sbjct: 397 NSELDEAIDRVIAGPQKKTRLMNEHERLVTAYHEGG 432


>gi|313765281|gb|EFS36645.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL013PA1]
 gi|313815350|gb|EFS53064.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL059PA1]
 gi|314917217|gb|EFS81048.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL050PA1]
 gi|314921717|gb|EFS85548.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL050PA3]
 gi|314931076|gb|EFS94907.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL067PA1]
 gi|314955055|gb|EFS99461.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL027PA1]
 gi|315099486|gb|EFT71462.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL059PA2]
 gi|327454532|gb|EGF01187.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL087PA3]
 gi|327456602|gb|EGF03257.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL083PA2]
 gi|328755586|gb|EGF69202.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL087PA1]
 gi|328756913|gb|EGF70529.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL025PA2]
          Length = 717

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 64/276 (23%), Positives = 96/276 (34%), Gaps = 26/276 (9%)

Query: 24  PR-TLEEFTGQVEACSNLKVFIE-----AAKARAEA--LDHVLFVGPPGLGKTTLAQVVA 75
           P+ T  +  G  EA   L+   E     A   R  A     VL  GPPG GKT LA+ VA
Sbjct: 162 PKSTFADVAGCQEAIDELQEIREFLAEPAKFQRVGAKIPKGVLLYGPPGTGKTLLARAVA 221

Query: 76  RELGVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
            E GV F S SG            ++  DL           ++FIDEI  +       + 
Sbjct: 222 GEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKEAAP-AIIFIDEIDAVGRHRGAGMG 280

Query: 127 PAMEDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNF 182
              ++ +  L  ++ E               LIAAT R  +L   L    RF   I +  
Sbjct: 281 GGHDEREQTLNQLLVEMDGFDVHGG----VILIAATNRPDVLDPALLRPGRFDRQIAVEA 336

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            +++    I++  A    +A   + A         T      +L         A+   I 
Sbjct: 337 PDLDGRLKILKVHAHGKPMADDVDLASIARRTPGMTGADLANVLNEAALLTARANLPVIG 396

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
               D A+ R+        +L   +  ++     GG
Sbjct: 397 NSELDEAIDRVIAGPQKKTRLMNEHERLVTAYHEGG 432


>gi|308232597|ref|ZP_07416569.2| hypothetical protein TMAG_00615 [Mycobacterium tuberculosis
           SUMu001]
 gi|308371486|ref|ZP_07425111.2| hypothetical protein TMCG_01378 [Mycobacterium tuberculosis
           SUMu003]
 gi|308371531|ref|ZP_07425240.2| hypothetical protein TMDG_01826 [Mycobacterium tuberculosis
           SUMu004]
 gi|308372769|ref|ZP_07429773.2| hypothetical protein TMEG_00367 [Mycobacterium tuberculosis
           SUMu005]
 gi|308373853|ref|ZP_07433840.2| hypothetical protein TMFG_02105 [Mycobacterium tuberculosis
           SUMu006]
 gi|308375016|ref|ZP_07442388.2| hypothetical protein TMGG_01414 [Mycobacterium tuberculosis
           SUMu007]
 gi|308378501|ref|ZP_07482776.2| hypothetical protein TMIG_00224 [Mycobacterium tuberculosis
           SUMu009]
 gi|308379651|ref|ZP_07487011.2| hypothetical protein TMJG_01124 [Mycobacterium tuberculosis
           SUMu010]
 gi|308380845|ref|ZP_07491226.2| hypothetical protein TMKG_01118 [Mycobacterium tuberculosis
           SUMu011]
 gi|308213388|gb|EFO72787.1| hypothetical protein TMAG_00615 [Mycobacterium tuberculosis
           SUMu001]
 gi|308328641|gb|EFP17492.1| hypothetical protein TMCG_01378 [Mycobacterium tuberculosis
           SUMu003]
 gi|308336386|gb|EFP25237.1| hypothetical protein TMDG_01826 [Mycobacterium tuberculosis
           SUMu004]
 gi|308339983|gb|EFP28834.1| hypothetical protein TMEG_00367 [Mycobacterium tuberculosis
           SUMu005]
 gi|308343981|gb|EFP32832.1| hypothetical protein TMFG_02105 [Mycobacterium tuberculosis
           SUMu006]
 gi|308347766|gb|EFP36617.1| hypothetical protein TMGG_01414 [Mycobacterium tuberculosis
           SUMu007]
 gi|308352390|gb|EFP41241.1| hypothetical protein TMIG_00224 [Mycobacterium tuberculosis
           SUMu009]
 gi|308356340|gb|EFP45191.1| hypothetical protein TMJG_01124 [Mycobacterium tuberculosis
           SUMu010]
 gi|308360296|gb|EFP49147.1| hypothetical protein TMKG_01118 [Mycobacterium tuberculosis
           SUMu011]
          Length = 583

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 72/285 (25%), Positives = 104/285 (36%), Gaps = 27/285 (9%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEA--CSNLKVFIEAAKARAEALD--HVLF 59
           RE LL+   ++ D  I L R +       Q+E    + L   + AAK    A    H++F
Sbjct: 289 RERLLAEAQAELDRQIGLTRVKN------QIERYRAATLMARVRAAKGMKVAQPSKHMIF 342

Query: 60  VGPPGLGKTTLAQVVARE-LGVNFRSTSGPVIAKAGDLAALLTNLE----DRDV------ 108
            GPPG GKTT+A+VVA    G+   +    V     D  A           + +      
Sbjct: 343 TGPPGTGKTTIARVVANILAGLGVIAEPKLVETSRKDFVAEYEGQSAVKTAKTIDQALGG 402

Query: 109 -LFIDEIHRLSIIVEEILYPAMEDFQLDLMV-GEGPSARSVKINLSRFTLIAATTRVGLL 166
            LFIDE + L    +    P  ++    L+   E    R V I     + I    R+   
Sbjct: 403 VLFIDEAYALVQERDGRTDPFGQEALDTLLARMENDRDRLVVIIAGYSSDID---RLLET 459

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
              L+ RF   I  + Y  E+L  I    A     A+T EAA      ++   +   R  
Sbjct: 460 NEGLRSRFATRIEFDTYSPEELLEIANVIAAADDSALTAEAAENFLQAAKQLEQRMLRG- 518

Query: 227 RRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMI 271
           RR  D A          E ++          +  D LD   L  I
Sbjct: 519 RRALDVAGNGRYARQLVEASEQCRDMRLAQVLDIDTLDEDRLREI 563


>gi|242788191|ref|XP_002481168.1| mitochondrial serine protease Pim1, putative [Talaromyces
           stipitatus ATCC 10500]
 gi|218721315|gb|EED20734.1| mitochondrial serine protease Pim1, putative [Talaromyces
           stipitatus ATCC 10500]
          Length = 1121

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 48/261 (18%), Positives = 88/261 (33%), Gaps = 38/261 (14%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI   K R      +L  VGPPG+GKT++ + +AR L   +   S
Sbjct: 581 EDHYGLKDVKDRILEFIAVGKLRGSVEGKILCLVGPPGVGKTSIGKSIARALNRQYYRFS 640

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ ++    +        
Sbjct: 641 VGGLTDVAEIKGHRRTYVGALPGRIIQALKKCQTENPLILIDEVDKIGRGHQGDPSSALL 700

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V ++LS+   +        +  PL DR  +     +
Sbjct: 701 ELLDPEQNSSFLD-------HYMDVPVDLSKVLFVCTANVTDTIPRPLLDRMELIELSGY 753

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
              E +       A         E +    +  R  P     L++     + V + K   
Sbjct: 754 VADEKMA-----IADKYLAPAAKELSGLKDVDVRLQPDAIEELIKFYCRESGVRNLKKQI 808

Query: 243 REIADAALLRLAIDKMGFDQL 263
            ++   A L++  D +G D L
Sbjct: 809 EKVYRKAALKIVQD-LGEDAL 828


>gi|146302995|ref|YP_001190311.1| AAA family ATPase [Metallosphaera sedula DSM 5348]
 gi|145701245|gb|ABP94387.1| AAA family ATPase, CDC48 subfamily [Metallosphaera sedula DSM 5348]
          Length = 768

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 63/314 (20%), Positives = 113/314 (35%), Gaps = 31/314 (9%)

Query: 16  DADISLLR-PR-TLEEFTGQVEACSNLKVFIEA--------AKARAEALDHVLFVGPPGL 65
           D  I   R PR T E+  G       ++  +E          +   E    ++  GPPG+
Sbjct: 177 DKPIEQTRYPRVTYEDIGGMKNVIQKIRELVELPLRHPELFKRLGIEPPKGIMLYGPPGV 236

Query: 66  GKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRL 117
           GKT LA+ VA E    F S +GP I           L  +  + +     ++FIDE+  +
Sbjct: 237 GKTLLAKAVANETESYFTSINGPEIMSKFYGESEQRLREIFEDAKKHAPAIIFIDEVDAI 296

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFG 175
           +   +E++          L+            +     +IAAT R   +   L+   RF 
Sbjct: 297 APKRDEVIGEVERRVVAQLLT-----LMDGLESRGNVIVIAATNRPNAVDPALRRPGRFD 351

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
             I +   + +    I+Q   +   L+   E      +    T      L+R     A  
Sbjct: 352 REIEIPLPDKQGRLEILQIHTRNMPLSKDVELEKLADISHGYTGADLSALVREAAMNALR 411

Query: 236 AHAKTIT---REIADAALLRLAIDKMGFDQLDLRYL-TMIARNFGGGP-VGIETISAGLS 290
            +   I     +I    L R+ +    F       + + +   +   P V  + I  GL+
Sbjct: 412 RYLPMIDISQDKIPPEILERMEVKMEDFMNAFKEIVPSGMREIYIEVPEVKWDDI-GGLN 470

Query: 291 EPRDAIEDLIEPYM 304
           E ++ + ++ E  +
Sbjct: 471 EIKEELREVAEYPL 484



 Score = 52.8 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 56/255 (21%), Positives = 91/255 (35%), Gaps = 23/255 (9%)

Query: 28  EEFTGQVEACSNLKVFIEAAK--------ARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           ++  G  E    L+   E           A  E    +L  GPPG GKT LA+ VA E G
Sbjct: 464 DDIGGLNEIKEELREVAEYPLKFPDYYETAGVEPPKGILLFGPPGTGKTMLAKAVATESG 523

Query: 80  VNFRSTSGP-VIAK-AGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMED 131
            NF +  GP V++K  G+    +  +  +       V+F DEI  ++ +       + + 
Sbjct: 524 ANFIAVRGPEVLSKWVGESERAIREIFRKARMYAPSVIFFDEIDAIAPMR----GISSDS 579

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
              + +V +  +      NL    ++AAT R  +L   L    RF   + +   +     
Sbjct: 580 GVTERLVNQLLAEMDGIENLDNVVIVAATNRPDILDPALLRPGRFEKLMYVPPPDKNARY 639

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            I++   K   L+  +    E+A R+ G        L R      +            AA
Sbjct: 640 DILKVHTKKVALS-DEVNLEELAERTEGYTGADLAALVREAAMRAIREGMRECVNRVSAA 698

Query: 250 LLRLAIDKMGFDQLD 264
                 D       D
Sbjct: 699 CPPNDKDCRDAKMRD 713


>gi|324501967|gb|ADY40871.1| ATP-dependent zinc metalloprotease YME1 [Ascaris suum]
          Length = 729

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 47/186 (25%), Positives = 74/186 (39%), Gaps = 23/186 (12%)

Query: 26  TLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  EA   ++  +         ++        VL VGPPG GKT LA+ +A E 
Sbjct: 247 TFDDVRGMDEAKKEVEEIVSYLRDPDRYSRLGGRLPKGVLLVGPPGTGKTLLARAIAGEA 306

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRL-SIIVEEILYPAM 129
            V F  TSG           A  +  L    + R   ++FIDEI  + S  V   ++P  
Sbjct: 307 QVPFFHTSGSEFDEVLVGQGARRVRDLFERAKQRAPCIIFIDEIDSVGSKRVSNSIHPYA 366

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                 L+       R+         +I AT RV  L   L    RF + + ++  ++  
Sbjct: 367 NQTINQLLAEMDGFNRN-----EGVIIIGATNRVEDLDKALLRPGRFDVRVTVSPPDLLG 421

Query: 188 LKTIVQ 193
            K I++
Sbjct: 422 RKDILR 427


>gi|313887624|ref|ZP_07821306.1| cell division protease FtsH [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312846233|gb|EFR33612.1| cell division protease FtsH [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 611

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 53/242 (21%), Positives = 89/242 (36%), Gaps = 24/242 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78
             ++  GQ EA  +L   ++  K   +  D         L VGPPG GKT LA+ VA E 
Sbjct: 162 NFDDVAGQEEAEESLVEIVDYLKNPKKYTDIGAKCPKGALLVGPPGTGKTLLARAVAGES 221

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S +G           A  +  L    +     ++FIDEI  +    +       +
Sbjct: 222 HVPFFSIAGSEFVEMFVGRGAAKVRELFDEAKKNAPCIIFIDEIDTIGKKRDSAGISGND 281

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E               ++AAT R  +L   L    RF   IR+    ++
Sbjct: 282 EREQTLNQLLTEMDGFDGNIG----IVMLAATNRPEILDPALLRPGRFDRQIRVELPTLK 337

Query: 187 DLKTIVQRGAKLTGLAVT-DEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           D   I++  A+   +    D +    +       ++A  L         + H K    +I
Sbjct: 338 DRIEILKVHARSYKMEDDIDYSLIARSTAGASGAQLANILNEAALRAVRMGHDKVRQEDI 397

Query: 246 AD 247
            +
Sbjct: 398 QE 399


>gi|308235604|ref|ZP_07666341.1| DNA polymerase III subunits gamma and tau [Gardnerella vaginalis
           ATCC 14018]
 gi|311113932|ref|YP_003985153.1| DNA polymerase III, gamma/tau subunit DnaX [Gardnerella vaginalis
           ATCC 14019]
 gi|310945426|gb|ADP38130.1| DNA polymerase III, gamma/tau subunit DnaX [Gardnerella vaginalis
           ATCC 14019]
          Length = 771

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 75/228 (32%), Gaps = 21/228 (9%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP T E   GQ +    L   ++  K         LF GP G GKT+ A+++AR
Sbjct: 4   ALYRRYRPDTFEGVIGQNQVTVPLMRALDQGKITHAY----LFSGPRGCGKTSSARILAR 59

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-DVLFIDEIHRLSIIVEEILY------PAM 129
            +      TS P   K      L T      DV+ ID      +     L       PA 
Sbjct: 60  CINCKEGPTSKP-CGKCQSCKDLATGGSGSIDVVEIDAASHNGVDDARELRERAGFAPAR 118

Query: 130 EDFQLDLMV--------GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           + +++ ++         G     + V+        I ATT    +   ++ R        
Sbjct: 119 DRYKIFILDEAHMVTPQGFNALLKIVEEPPEHVMFIFATTEPDKVIGTIRSR-THHYPFR 177

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
               E +   +Q   K  G+               G+ R    +L ++
Sbjct: 178 LVPPEVMGPYLQDICKKEGIQAQKGVLRLAMRAGGGSMRDTLSVLDQL 225


>gi|213691690|ref|YP_002322276.1| Vesicle-fusing ATPase [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|213523151|gb|ACJ51898.1| Vesicle-fusing ATPase [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|320457780|dbj|BAJ68401.1| putative ATPase [Bifidobacterium longum subsp. infantis ATCC 15697]
          Length = 402

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 63/281 (22%), Positives = 98/281 (34%), Gaps = 48/281 (17%)

Query: 8   LSRNVSQEDADISLLR------PR-TLEEFTGQVEACSNLKVFIE-----AAKARA---E 52
           +    S  D DI   R      P  T + F G  +  +  K  IE     +A+ RA   +
Sbjct: 126 IRPGESDHDDDIKQYRITPGSDPSLTFDSFGGYEQVITRAKELIETQLGNSAQMRAIGAK 185

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLT------NLE 104
            +  V+F G PG GKT LA+++A      F   SGP I     GD    L         +
Sbjct: 186 PIKGVIFTGAPGTGKTHLARIIANVADAQFYLVSGPTIVSKYVGDSEETLRMIFAAAQAD 245

Query: 105 DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164
            R ++F DEI  ++   E        +     +V +  +      +     ++AAT R+ 
Sbjct: 246 KRAIIFFDEIDSIASSREND-----TNGVGKRLVAQLLTLMDGFESKGNVVVVAATNRIE 300

Query: 165 LLTNPL-----------------QDRFGIP-IRLNFYEIEDLKTIVQRGAKLTGLAVTDE 206
            +   L                  DR GI  ++     IE    +V    +  G +  + 
Sbjct: 301 DVDPALLRPGRFDWQIPFPMPSEHDRLGILQVQARSLSIEGELPLVDIAQRTEGWSGAEV 360

Query: 207 AA--CEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
            A   E A+ +    R A R    V  F  V     +    
Sbjct: 361 CAIWTEAALVAAKDRRGAIRAADLVTAFERVERRPELRHHR 401


>gi|153956411|ref|YP_001397176.1| DNA polymerase III subunits gamma and tau [Clostridium kluyveri DSM
           555]
 gi|219856723|ref|YP_002473845.1| hypothetical protein CKR_3380 [Clostridium kluyveri NBRC 12016]
 gi|146349269|gb|EDK35805.1| DnaX [Clostridium kluyveri DSM 555]
 gi|219570447|dbj|BAH08431.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 553

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 73/224 (32%), Gaps = 21/224 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+   +  GQ      LK  I             LF G  G GKT++A+++A+ +    
Sbjct: 11  RPKNFSDVVGQNHITVTLKNQI----LNNRVAHAYLFCGTRGTGKTSMAKILAKAVNCLD 66

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLM 137
                P      ++   +      DV+ +D     ++  +  ++E + YP  E      +
Sbjct: 67  IQQGEPCNEC--EMCKKINQGISMDVIEMDTASKRKLEDIKDVIENVKYPPQEGKYKVYI 124

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             ++++        I ATT    L   +  R            E  
Sbjct: 125 MDEVHMLTQEAVNAFLKTLEEPPLNVIFILATTDPQKLPVTILSRCQKFDFRRIKSSEIF 184

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
              ++      G+   D +   I+    G  R A  +L +    
Sbjct: 185 NR-LRAIVNEEGIFADDRSLNLISRICDGAMRDALSVLDQAISM 227


>gi|6692099|gb|AAF24564.1|AC007764_6 F22C12.12 [Arabidopsis thaliana]
          Length = 825

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 50/258 (19%), Positives = 89/258 (34%), Gaps = 41/258 (15%)

Query: 9   SRNVSQEDADISLLRPR---------TLEEFTGQVEACSNLKVFIEAAKARAE------- 52
           +  V+ ++     +RP          T ++     E   +L+  +     R +       
Sbjct: 466 APEVAPDNEFEKRIRPEVIPAEEINVTFKDIGALDEIKESLQELVMLPLRRPDLFTGGLL 525

Query: 53  -ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLED 105
                +L  GPPG GKT LA+ +A+E G +F + S   I          ++ AL T    
Sbjct: 526 KPCRGILLFGPPGTGKTMLAKAIAKEAGASFINVSMSTITSKWFGEDEKNVRALFTLASK 585

Query: 106 --RDVLFIDEIH-----RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIA 158
               ++F+DE+      R  +   E +     +F              +     R  ++A
Sbjct: 586 VSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFM-------SHWDGLMTKPGERILVLA 638

Query: 159 ATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGT 218
           AT R   L   +  RF   I +    +E+ + I++    L      DE      +    T
Sbjct: 639 ATNRPFDLDEAIIRRFERRIMVGLPAVENREKILR---TLLAKEKVDENLDYKELAM-MT 694

Query: 219 PRIAGRLLRRVRDFAEVA 236
               G  L+ +   A   
Sbjct: 695 EGYTGSDLKNLCTTAAYR 712


>gi|260203078|ref|ZP_05770569.1| hypothetical protein MtubK8_01992 [Mycobacterium tuberculosis K85]
 gi|289572521|ref|ZP_06452748.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289536952|gb|EFD41530.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
          Length = 573

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 72/285 (25%), Positives = 105/285 (36%), Gaps = 27/285 (9%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEA--CSNLKVFIEAAKARAEALD--HVLF 59
           RE LL++  ++ D  I L R +       Q+E    + L   + AAK    A    H++F
Sbjct: 279 RERLLAQAQAELDRQIGLTRVKN------QIERYRAATLMARVRAAKGMKVAQPSKHMIF 332

Query: 60  VGPPGLGKTTLAQVVARE-LGVNFRSTSGPVIAKAGDLAALLTNLE----DRDV------ 108
            GPPG GKTT+A+VVA    G+   +    V     D  A           + +      
Sbjct: 333 TGPPGTGKTTIARVVANILAGLGVIAEPKLVETSRKDFVAEYEGQSAVKTAKTIDQALGG 392

Query: 109 -LFIDEIHRLSIIVEEILYPAMEDFQLDLMV-GEGPSARSVKINLSRFTLIAATTRVGLL 166
            LFIDE + L    +    P  ++    L+   E    R V I     + I    R+   
Sbjct: 393 VLFIDEAYALVQERDGRTDPFGQEALDTLLARMENDRDRLVVIIAGYSSDID---RLLET 449

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
              L+ RF   I  + Y  E+L  I    A     A+T EAA      ++   +   R  
Sbjct: 450 NEGLRSRFATRIEFDTYSPEELLEIANVIAAADDSALTAEAAENFLQAAKQLEQRMLRG- 508

Query: 227 RRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMI 271
           RR  D A          E ++          +  D LD   L  I
Sbjct: 509 RRALDVAGNGRYARQLVEASEQCRDMRLAQVLDIDTLDEDRLREI 553


>gi|118575717|ref|YP_875460.1| AAA ATPase [Cenarchaeum symbiosum A]
 gi|118194238|gb|ABK77156.1| AAA ATPase [Cenarchaeum symbiosum A]
          Length = 724

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 58/296 (19%), Positives = 103/296 (34%), Gaps = 30/296 (10%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEA--------AKARAEA 53
           MDR   LS      ++  + +   T EE  G       ++  +E         ++   E+
Sbjct: 157 MDRSTSLSILTEAPESKKARV---TYEEVGGLESEIRAMREIVELPLRHPELFSRLGVES 213

Query: 54  LDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR- 106
              +L  GPPG GKT +A+V+A E   N  S +GP I           L  +    +D  
Sbjct: 214 HSGILLYGPPGCGKTLIAKVLASESEANMYSINGPEIMNKYYGETEARLRDIFKEAKDNS 273

Query: 107 -DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
             ++FIDEI  ++   EE  Y  +E   +  ++           +     ++ AT R   
Sbjct: 274 PSIIFIDEIDAIAPKREE-AYGDVEKRVVAQLLAL----MDGLTDRGNVIVLGATNRPDS 328

Query: 166 LTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAG 223
           +   L+   RF     ++    +    I+Q   +   L+   +     +     T     
Sbjct: 329 VDPALRRPGRFDREAEISVPNADGRLEILQIHTRGMPLSDGIDLRELASELHGYTGADIK 388

Query: 224 RLLRRVRDFAEVAHAKTITREIAD---AALLRLAIDKMGF-DQLDLRYLTMIARNF 275
            L R     A   +   I  E        L  + +  + F D +     T +   +
Sbjct: 389 SLCREAAMKAIRRYLPKIDLETDRIPAEVLETMEVKLVDFYDAMHEVVPTAMREFY 444



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 80/245 (32%), Gaps = 23/245 (9%)

Query: 28  EEFTGQVEACSNLK-VFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           ++  G      +LK   I A       +K         L  GPPG GKT +A+ +A E G
Sbjct: 453 DDVGGLDGVKQSLKDNLIAAMEDPGRFSKMGVRPPKGALIYGPPGCGKTMVARALAAESG 512

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMED 131
            N     GP +           +  +    +     V+  DE+  L+            +
Sbjct: 513 ANMILVRGPEVLSKWVGESEKAIREIFRKAKSASPCVVIFDEMDSLAKYRGGDETGGTGE 572

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
             L  ++ E     S     SR  ++  T+R  LL   L    R  + + +   +     
Sbjct: 573 TILGQLLTEMDDGAS-----SRVVIVGVTSRPDLLDGSLLRTGRLDLLLYVQPPDEAGRL 627

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            I++   +   LA   +           T      L R     A    A+ ++     AA
Sbjct: 628 EIIKILTERMPLAPDVKLPEIAVSTRNYTGADLAALCREAAVHAMQQEAEKVSSADFAAA 687

Query: 250 LLRLA 254
           L R+ 
Sbjct: 688 LKRVR 692


>gi|39996282|ref|NP_952233.1| cell division protein FtsH [Geobacter sulfurreducens PCA]
 gi|39983162|gb|AAR34556.1| cell division protein FtsH [Geobacter sulfurreducens PCA]
 gi|298505295|gb|ADI84018.1| cell division ATP-dependent zinc protease FtsH [Geobacter
           sulfurreducens KN400]
          Length = 617

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 60/250 (24%), Positives = 100/250 (40%), Gaps = 31/250 (12%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAK-------ARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G       LK  ++  +          +    VL VGPPG GKT LA+ VA E 
Sbjct: 173 TFDDVAGMENPKMELKEIVDYLRDPKKFQRIGGKVPKGVLLVGPPGTGKTLLARAVAGEA 232

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAME 130
            V F S S        V   AG +  L    +     ++FIDE+  +       L    +
Sbjct: 233 DVTFLSISASQFIEMFVGVGAGRVRDLFATAKKSAPSIIFIDELDAVGRSRGAGLGGGHD 292

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E     S         ++AAT R  +L   L    RF   + ++  +  
Sbjct: 293 EREQTLNQLLSEMDGFDSHD----EVIVMAATNRPDVLDPALLRPGRFDRHVVIDRPDWR 348

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV----AHAKTIT 242
           D + I+    +   L        ++A+ +RGTP +AG  L  + + A +     +A T+T
Sbjct: 349 DREKILHVHTRKIPLDKD----VDLAVIARGTPGMAGADLENLVNEAAILAARENAATVT 404

Query: 243 REIADAALLR 252
            E  + A  +
Sbjct: 405 MEHMERAKDK 414


>gi|315102008|gb|EFT73984.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL046PA1]
          Length = 717

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 64/276 (23%), Positives = 96/276 (34%), Gaps = 26/276 (9%)

Query: 24  PR-TLEEFTGQVEACSNLKVFIE-----AAKARAEA--LDHVLFVGPPGLGKTTLAQVVA 75
           P+ T  +  G  EA   L+   E     A   R  A     VL  GPPG GKT LA+ VA
Sbjct: 162 PKSTFADVAGCQEAIDELQEIREFLAEPAKFQRVGAKIPKGVLLYGPPGTGKTLLARAVA 221

Query: 76  RELGVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
            E GV F S SG            ++  DL           ++FIDEI  +       + 
Sbjct: 222 GEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKEAAP-AIIFIDEIDAVGRHRGAGMG 280

Query: 127 PAMEDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNF 182
              ++ +  L  ++ E               LIAAT R  +L   L    RF   I +  
Sbjct: 281 GGHDEREQTLNQLLVEMDGFDVHGG----VILIAATNRPDVLDPALLRPGRFDRQIAVEA 336

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            +++    I++  A    +A   + A         T      +L         A+   I 
Sbjct: 337 PDLDGRLKILKVHAHGKPMADDVDLASIARRTPGMTGADLANVLNEAALLTARANLPVIG 396

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
               D A+ R+        +L   +  ++     GG
Sbjct: 397 NSELDEAIDRVIAGPQKKTRLMNEHERLVTAYHEGG 432


>gi|297822823|ref|XP_002879294.1| hypothetical protein ARALYDRAFT_482018 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297325133|gb|EFH55553.1| hypothetical protein ARALYDRAFT_482018 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 695

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 55/274 (20%), Positives = 98/274 (35%), Gaps = 23/274 (8%)

Query: 26  TLEEFTG-----QV--EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G     Q   E    LK         A+    VL +GPPG GKT LA+ +A E 
Sbjct: 225 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAVGAKIPKGVLLIGPPGTGKTLLAKAIAGEA 284

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG           A  +  L    ++    ++F+DEI  +       +    +
Sbjct: 285 GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGND 344

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E               ++AAT R  +L + L    RF   + ++  +++
Sbjct: 345 EREQTLNQLLTEMDGFEGNTG----VIVVAATNRADILDSALLRPGRFDRQVSVDVPDVK 400

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
               I++  A                     +      LL      A      +I+ +  
Sbjct: 401 GRTDILKVHAGNKKFDNDVSLEIIAMRTPGFSGADLANLLNEAAILAGRRARTSISSKEI 460

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV 280
           D ++ R+     G    D +  +++A +  G  V
Sbjct: 461 DDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAV 494


>gi|225559174|gb|EEH07457.1| lon proteinase [Ajellomyces capsulatus G186AR]
          Length = 1080

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 47/254 (18%), Positives = 91/254 (35%), Gaps = 37/254 (14%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI   K R      +L FVGPPG+GKT++ + +AR L   +   S
Sbjct: 540 EDHYGLEDVKDRILEFIAVGKLRGTVEGKILCFVGPPGVGKTSIGKSIARALNREYYRFS 599

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ ++    +        
Sbjct: 600 VGGLTDVAEIKGHRRTYVGALPGRVIQALKKCQTENPLILIDEVDKIGRGHQGDPASALL 659

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V ++LS+   +        +  PL DR  + I L+ 
Sbjct: 660 ELLDPEQNSSFLD-------HYMDVPVDLSKVLFVCTANMTDTIPRPLLDRMEM-IELSG 711

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  ++   I +R       +  + +  +    +     I   L++     + V + K   
Sbjct: 712 YVADEKMAIAER---YLAPSAKEMSGLKDVDVTLEKDAI-EELIKSYCRESGVRNLKKQI 767

Query: 243 REIADAALLRLAID 256
            ++   A L++  D
Sbjct: 768 EKVYRKAALKIIQD 781


>gi|167041262|gb|ABZ06018.1| putative ATPase family associated with various cellular activities
           (AAA) [uncultured marine microorganism HF4000_005D21]
 gi|167045767|gb|ABZ10413.1| putative ATPase family associated with various cellular activities
           (AAA) [uncultured marine bacterium HF4000_APKG3108]
          Length = 555

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 50/275 (18%), Positives = 93/275 (33%), Gaps = 30/275 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  +E  GQ      L   I++ +         +  G  G GKT+ A+++++ L    
Sbjct: 14  RPKNFKELIGQDIMVETLVNSIKSNRIAQA----FMLTGERGTGKTSTARIISKSLTCTG 69

Query: 83  RSTSGPVIAKAGDL--AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME-----DFQLD 135
               G V  K G++     +TN +  DV   D   R  +     +  A            
Sbjct: 70  NFLEG-VKCKTGEICHCEEITNDKHLDVTECDAASRTGVDDVRQIIDAARYKPTTAKYKI 128

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             ++++   ++   I  TT    +   +  R      L+   I+
Sbjct: 129 YIIDECHMLSRSAWNALLKTLEEPPNQLKFIFCTTEPKKIPLTIASRCQ-TFHLHRASIK 187

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR--- 243
            L   +++ +K+    ++D A   IA  S G+ R A  LL R      V+  +       
Sbjct: 188 VLFDHLKKISKIEEGKISDSAIKLIAKASTGSVRDAISLLDRALINQHVSEKEVDEATMR 247

Query: 244 -----EIADAALLRLAIDKMGFDQLDLRYLTMIAR 273
                      L  L     G  +  +  L  +  
Sbjct: 248 KMLGVADRSKILELLKFIFDGDQKQSIESLKQMID 282


>gi|50841750|ref|YP_054977.1| putative cell division protein FtsH [Propionibacterium acnes
           KPA171202]
 gi|289424180|ref|ZP_06425963.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes SK187]
 gi|50839352|gb|AAT82019.1| putative cell division protein FtsH [Propionibacterium acnes
           KPA171202]
 gi|289154877|gb|EFD03559.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes SK187]
 gi|313802737|gb|EFS43955.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL110PA2]
 gi|313814558|gb|EFS52272.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL025PA1]
 gi|313828789|gb|EFS66503.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL063PA2]
 gi|313831709|gb|EFS69423.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL007PA1]
 gi|313834409|gb|EFS72123.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL056PA1]
 gi|313840400|gb|EFS78114.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL086PA1]
 gi|314969686|gb|EFT13784.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL037PA1]
 gi|314974751|gb|EFT18846.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL053PA1]
 gi|314977052|gb|EFT21147.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL045PA1]
 gi|314985463|gb|EFT29555.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL005PA1]
 gi|315082135|gb|EFT54111.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL078PA1]
 gi|315097298|gb|EFT69274.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL038PA1]
 gi|315106292|gb|EFT78268.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL030PA1]
 gi|315110070|gb|EFT82046.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL030PA2]
 gi|327331332|gb|EGE73071.1| cell division protein FtsH [Propionibacterium acnes HL096PA2]
 gi|327447287|gb|EGE93941.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL043PA1]
 gi|327450266|gb|EGE96920.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL043PA2]
 gi|328761145|gb|EGF74689.1| cell division protein FtsH [Propionibacterium acnes HL099PA1]
          Length = 717

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 64/276 (23%), Positives = 96/276 (34%), Gaps = 26/276 (9%)

Query: 24  PR-TLEEFTGQVEACSNLKVFIE-----AAKARAEA--LDHVLFVGPPGLGKTTLAQVVA 75
           P+ T  +  G  EA   L+   E     A   R  A     VL  GPPG GKT LA+ VA
Sbjct: 162 PKSTFADVAGCQEAIDELQEIREFLAEPAKFQRVGAKIPKGVLLYGPPGTGKTLLARAVA 221

Query: 76  RELGVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
            E GV F S SG            ++  DL           ++FIDEI  +       + 
Sbjct: 222 GEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKEAAP-AIIFIDEIDAVGRHRGAGMG 280

Query: 127 PAMEDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNF 182
              ++ +  L  ++ E               LIAAT R  +L   L    RF   I +  
Sbjct: 281 GGHDEREQTLNQLLVEMDGFDVHGG----VILIAATNRPDVLDPALLRPGRFDRQIAVEA 336

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            +++    I++  A    +A   + A         T      +L         A+   I 
Sbjct: 337 PDLDGRLKILKVHAHGKPMADDVDLASIARRTPGMTGADLANVLNEAALLTARANLPVIG 396

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
               D A+ R+        +L   +  ++     GG
Sbjct: 397 NSELDEAIDRVIAGPQKKTRLMNEHERLVTAYHEGG 432


>gi|15790472|ref|NP_280296.1| cell division cycle protein [Halobacterium sp. NRC-1]
 gi|169236208|ref|YP_001689408.1| AAA-type ATPase (transitional ATPase homolog) [Halobacterium
           salinarum R1]
 gi|10580970|gb|AAG19776.1| cell division cycle protein [Halobacterium sp. NRC-1]
 gi|167727274|emb|CAP14060.1| AAA-type ATPase (transitional ATPase homolog) [Halobacterium
           salinarum R1]
          Length = 759

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 55/264 (20%), Positives = 95/264 (35%), Gaps = 38/264 (14%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
           T E+  G       ++  IE      E            VL  GPPG GKT +A+ VA E
Sbjct: 194 TYEDIGGLDGELEQVREMIELPMRHPELFQQLGIDPPKGVLLHGPPGTGKTLIAKAVANE 253

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM 129
           +  +F + SGP I           L  +    E+    ++F+DE+  ++    E      
Sbjct: 254 IDAHFETISGPEIMSKYYGESEEKLREVFDEAEENAPAIVFVDELDSIAPKRGE-----T 308

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
           +      +V +  S      +    T+IAAT RV  +   L+   RF   I +   + + 
Sbjct: 309 QGDVERRVVAQLLSLMDGLEDRGDVTVIAATNRVDAIDPALRRGGRFDREIEIGVPDQDG 368

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            K I+Q   +   L        ++   +  T    G  +  +   A +   + +  +I  
Sbjct: 369 RKEILQVHTRGMPLVED----IDLDDYAESTHGFVGADIESLAKEAAMNALRRVRPDIDL 424

Query: 248 AALLRLAIDKMGFDQLDLRYLTMI 271
            +           D++D   L  I
Sbjct: 425 ES-----------DEIDAELLESI 437



 Score = 45.8 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DV 108
           VL  GPPG GKT LA+ VA E   NF S  GP +           +  +          V
Sbjct: 506 VLLYGPPGTGKTLLAKAVANEANSNFISVKGPELLNKYVGESEKGVREVFEKARSNAPTV 565

Query: 109 LFIDEIHRL 117
           +F DEI  +
Sbjct: 566 VFFDEIDAI 574


>gi|322707676|gb|EFY99254.1| ATPase, AAA family protein [Metarhizium anisopliae ARSEF 23]
          Length = 1012

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 64/311 (20%), Positives = 112/311 (36%), Gaps = 44/311 (14%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEA---------- 53
            + + S  +++E+     LR  T E+     +  S LK+    A  R +A          
Sbjct: 681 EKRISSGQINREN-----LR-TTFEDVHAPKDTISALKLLTSLALVRPDAFAYGVLSQDR 734

Query: 54  LDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLEDRD 107
           +   L  GPPG GKT LA+ VA+E G N    SG  I           + A+ T  +  +
Sbjct: 735 IPGCLLYGPPGTGKTMLAKAVAKESGANMLEISGATINDKWVGESEKLIRAVFTLAKKLE 794

Query: 108 --VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
             V+FIDE   L          A     ++  + E               ++ AT R   
Sbjct: 795 PCVVFIDEADSLLANRSMFSNRASHREHINQFLKEWDGMEETNA-----FIMVATNRPFD 849

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           L + +  R    I ++     D   I+    +L     + + +  +   +R TP  +G  
Sbjct: 850 LDDAVLRRLPRKILMDLPLNADRAAIL----RLLLRDESLDGSVSLDDLARKTPYYSGSD 905

Query: 226 LRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETI 285
           L+ V   A +A  +          +         +   + R L     +F    + ++ I
Sbjct: 906 LKNVCVAAAMAAVEEENE------MAAKHEGPEPYHYPERRVLR--RDHFE---IALKQI 954

Query: 286 SAGLSEPRDAI 296
            A +SE   ++
Sbjct: 955 PASISEDMTSL 965


>gi|313817473|gb|EFS55187.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL046PA2]
          Length = 717

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 64/276 (23%), Positives = 96/276 (34%), Gaps = 26/276 (9%)

Query: 24  PR-TLEEFTGQVEACSNLKVFIE-----AAKARAEA--LDHVLFVGPPGLGKTTLAQVVA 75
           P+ T  +  G  EA   L+   E     A   R  A     VL  GPPG GKT LA+ VA
Sbjct: 162 PKSTFADVAGCQEAIDELQEIREFLAEPAKFQRVGAKIPKGVLLYGPPGTGKTLLARAVA 221

Query: 76  RELGVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
            E GV F S SG            ++  DL           ++FIDEI  +       + 
Sbjct: 222 GEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKEAAP-AIIFIDEIDAVGRHRGAGMG 280

Query: 127 PAMEDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNF 182
              ++ +  L  ++ E               LIAAT R  +L   L    RF   I +  
Sbjct: 281 GGHDEREQTLNQLLVEMDGFDVHGG----VILIAATNRPDVLDPALLRPGRFDRQIAVEA 336

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            +++    I++  A    +A   + A         T      +L         A+   I 
Sbjct: 337 PDLDGRLKILKVHAHGKPMADDVDLASIARRTPGMTGADLANVLNEAALLTARANLPVIG 396

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
               D A+ R+        +L   +  ++     GG
Sbjct: 397 NSELDEAIDRVIAGPQKKTRLMNEHERLVTAYHEGG 432


>gi|313806394|gb|EFS44901.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL087PA2]
          Length = 717

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 64/276 (23%), Positives = 96/276 (34%), Gaps = 26/276 (9%)

Query: 24  PR-TLEEFTGQVEACSNLKVFIE-----AAKARAEA--LDHVLFVGPPGLGKTTLAQVVA 75
           P+ T  +  G  EA   L+   E     A   R  A     VL  GPPG GKT LA+ VA
Sbjct: 162 PKSTFADVAGCQEAIDELQEIREFLAEPAKFQRVGAKIPKGVLLYGPPGTGKTLLARAVA 221

Query: 76  RELGVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
            E GV F S SG            ++  DL           ++FIDEI  +       + 
Sbjct: 222 GEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKEAAP-AIIFIDEIDAVGRHRGAGMG 280

Query: 127 PAMEDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNF 182
              ++ +  L  ++ E               LIAAT R  +L   L    RF   I +  
Sbjct: 281 GGHDEREQTLNQLLVEMDGFDVHGG----VILIAATNRPDVLDPALLRPGRFDRQIAVEA 336

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            +++    I++  A    +A   + A         T      +L         A+   I 
Sbjct: 337 PDLDGRLKILKVHAHGKPMADDVDLASIARRTPGMTGADLANVLNEAALLTARANLPVIG 396

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
               D A+ R+        +L   +  ++     GG
Sbjct: 397 NSELDEAIDRVIAGPQKKTRLMNEHERLVTAYHEGG 432


>gi|313772804|gb|EFS38770.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL074PA1]
 gi|313810944|gb|EFS48658.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL083PA1]
 gi|314964587|gb|EFT08687.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL082PA1]
          Length = 717

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 64/276 (23%), Positives = 96/276 (34%), Gaps = 26/276 (9%)

Query: 24  PR-TLEEFTGQVEACSNLKVFIE-----AAKARAEA--LDHVLFVGPPGLGKTTLAQVVA 75
           P+ T  +  G  EA   L+   E     A   R  A     VL  GPPG GKT LA+ VA
Sbjct: 162 PKSTFADVAGCQEAIDELQEIREFLAEPAKFQRVGAKIPKGVLLYGPPGTGKTLLARAVA 221

Query: 76  RELGVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
            E GV F S SG            ++  DL           ++FIDEI  +       + 
Sbjct: 222 GEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKEAAP-AIIFIDEIDAVGRHRGAGMG 280

Query: 127 PAMEDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNF 182
              ++ +  L  ++ E               LIAAT R  +L   L    RF   I +  
Sbjct: 281 GGHDEREQTLNQLLVEMDGFDVHGG----VILIAATNRPDVLDPALLRPGRFDRQIAVEA 336

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            +++    I++  A    +A   + A         T      +L         A+   I 
Sbjct: 337 PDLDGRLKILKVHAHGKPMADDVDLASIARRTPGMTGADLANVLNEAALLTARANLPVIG 396

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
               D A+ R+        +L   +  ++     GG
Sbjct: 397 NSELDEAIDRVIAGPQKKTRLMNEHERLVTAYHEGG 432


>gi|330792427|ref|XP_003284290.1| hypothetical protein DICPUDRAFT_96642 [Dictyostelium purpureum]
 gi|325085743|gb|EGC39144.1| hypothetical protein DICPUDRAFT_96642 [Dictyostelium purpureum]
          Length = 1334

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 39/105 (37%), Gaps = 4/105 (3%)

Query: 6   GLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH----VLFVG 61
            + S     +   +   +P+ L++  G       L +F+     +     +    VL  G
Sbjct: 775 NISSIPKGHDQLWVEKYKPKDLKDLIGNGSVFEQLSLFLSQWNQKQPKDPNKRNAVLLSG 834

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDR 106
           PPG+GKT+ A ++ +  G      +        ++  +L    D 
Sbjct: 835 PPGIGKTSAAILLCKLKGFEPIELNASDTRSKSEIERVLKGASDN 879


>gi|325967941|ref|YP_004244133.1| ATPase AAA [Vulcanisaeta moutnovskia 768-28]
 gi|323707144|gb|ADY00631.1| AAA family ATPase, possible cell division control protein cdc48
           [Vulcanisaeta moutnovskia 768-28]
          Length = 748

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 57/281 (20%), Positives = 96/281 (34%), Gaps = 40/281 (14%)

Query: 28  EEFTGQVEACSNLKVFIE--------AAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           ++  G       LK  +E          +   +    +L  GPPG GKT LA+ VA E  
Sbjct: 470 DDIGGYDNVKQELKEMVEWPLRYPRYFEELGIDPPKGILLFGPPGTGKTLLAKAVATESN 529

Query: 80  VNFRSTSGPVIAKA--GDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAMED 131
            NF +  GP I     G+    +  +  +       V+F DEI  ++          ++ 
Sbjct: 530 ANFIAVRGPEILSKWFGESERAIREIFKKARMAAPCVIFFDEIDAIAPAR----GLRVDS 585

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
              D +V +  +       L    +IAAT R  ++   L    RF   + +   +     
Sbjct: 586 GATDRIVNQLLAEMDGIAPLKNVVVIAATNRADIVDPALLRPGRFDRIVYVPPPDENARF 645

Query: 190 TIVQ---RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR--- 243
            I++   RG KL+      +      +  R        L   VR+ A +A  +TI     
Sbjct: 646 EIIKVHIRGLKLSDEVKDSDYKYLKDLARRTEGYTGADLAALVREAAMLALRETIRSNSN 705

Query: 244 -------EIADAALL-----RLAIDKMGFDQLDLRYLTMIA 272
                  E  + AL          D   F+++       + 
Sbjct: 706 QVRPVDIEHFEEALKVVPPSLAKQDIARFEEMARNLRRALR 746



 Score = 53.9 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 49/189 (25%), Positives = 72/189 (38%), Gaps = 24/189 (12%)

Query: 24  PR-TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVV 74
           PR T E+     EA   ++  IE      E   H        VL +GPPG GKT LA+ V
Sbjct: 176 PRVTWEDIGDLEEAKRKIRELIELPLRHPEIFKHLGIEPPKGVLLIGPPGTGKTLLAKAV 235

Query: 75  ARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILY 126
           A E    F S +GP I           L  +    +     ++FIDEI  ++   EE+  
Sbjct: 236 ASEANAYFVSINGPEIMSKYYGESEAKLREIFEEAKKNAPAIIFIDEIDAIAPKREEVTG 295

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
              +     L+               +  +I AT R   +   L+   RF   I ++  +
Sbjct: 296 EVEKRVVAQLLT-----LMDGLQERGQVIVIGATNRPEAVDPALRRPGRFDREIYISMPD 350

Query: 185 IEDLKTIVQ 193
               K I+Q
Sbjct: 351 KNARKEILQ 359


>gi|321466015|gb|EFX77013.1| hypothetical protein DAPPUDRAFT_306039 [Daphnia pulex]
          Length = 869

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 74/192 (38%), Gaps = 33/192 (17%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI  ++ +      +L F GPPG+GKT++A+ +A+ L   +   S
Sbjct: 387 EDHYGMEDVKKRILEFIAVSELKKSTQGKILCFYGPPGVGKTSIARSIAKALNREYFRFS 446

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ ++    +        
Sbjct: 447 VGGMTDVAEIKGHRRTYVGAMPGKMIQCLKKTKTENPLVLIDEVDKIGKGYQGDPASALL 506

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V I+LS+   I     +  +  PL+DR  + I ++ 
Sbjct: 507 ELLDPEQNKNFLD-------HYLDVPIDLSKVLFICTANVLDTIPEPLRDRMEM-IDVSG 558

Query: 183 YEIEDLKTIVQR 194
           Y  E+   I ++
Sbjct: 559 YVAEEKMNIAEK 570


>gi|289428980|ref|ZP_06430660.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes J165]
 gi|289157981|gb|EFD06204.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes J165]
 gi|328758404|gb|EGF72020.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL020PA1]
          Length = 717

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 64/276 (23%), Positives = 96/276 (34%), Gaps = 26/276 (9%)

Query: 24  PR-TLEEFTGQVEACSNLKVFIE-----AAKARAEA--LDHVLFVGPPGLGKTTLAQVVA 75
           P+ T  +  G  EA   L+   E     A   R  A     VL  GPPG GKT LA+ VA
Sbjct: 162 PKSTFADVAGCQEAIDELQEIREFLAEPAKFQRVGAKIPKGVLLYGPPGTGKTLLARAVA 221

Query: 76  RELGVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
            E GV F S SG            ++  DL           ++FIDEI  +       + 
Sbjct: 222 GEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKEAAP-AIIFIDEIDAVGRHRGAGMG 280

Query: 127 PAMEDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNF 182
              ++ +  L  ++ E               LIAAT R  +L   L    RF   I +  
Sbjct: 281 GGHDEREQTLNQLLVEMDGFDVHGG----VILIAATNRPDVLDPALLRPGRFDRQIAVEA 336

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            +++    I++  A    +A   + A         T      +L         A+   I 
Sbjct: 337 PDLDGRLKILKVHAHGKPMADDVDLASIARRTPGMTGADLANVLNEAALLTARANLPVIG 396

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
               D A+ R+        +L   +  ++     GG
Sbjct: 397 NSELDEAIDRVIAGPQKKTRLMNEHERLVTAYHEGG 432


>gi|260184797|ref|ZP_05762271.1| hypothetical protein MtubCP_01892 [Mycobacterium tuberculosis
           CPHL_A]
 gi|289445470|ref|ZP_06435214.1| ATPase [Mycobacterium tuberculosis CPHL_A]
 gi|289418428|gb|EFD15629.1| ATPase [Mycobacterium tuberculosis CPHL_A]
          Length = 573

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 72/285 (25%), Positives = 104/285 (36%), Gaps = 27/285 (9%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEA--CSNLKVFIEAAKARAEALD--HVLF 59
           RE LL+   ++ D  I L R +       Q+E    + L   + AAK    A    H++F
Sbjct: 279 RERLLAEAQAELDRQIGLTRVKN------QIERYRAATLMARVRAAKGMKVAQPSKHMIF 332

Query: 60  VGPPGLGKTTLAQVVARE-LGVNFRSTSGPVIAKAGDLAALLTNLE----DRDV------ 108
            GPPG GKTT+A+VVA    G+   +    V     D  A           + +      
Sbjct: 333 TGPPGTGKTTIARVVANILAGLGVIAEPKLVETSRKDFVAEYEGQSAVKTAKTIDQALGG 392

Query: 109 -LFIDEIHRLSIIVEEILYPAMEDFQLDLMV-GEGPSARSVKINLSRFTLIAATTRVGLL 166
            LFIDE + L    +    P  ++    L+   E    R V I     + I    R+   
Sbjct: 393 VLFIDEAYALVQERDGRTDPFGQEALDTLLARMENDRDRLVVIIAGYSSDID---RLLET 449

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
              L+ RF   I  + Y  E+L  I    A     A+T EAA      ++   +   R  
Sbjct: 450 NEGLRSRFATRIEFDTYSPEELLEIANVIAAADDSALTAEAAENFLQAAKQLEQRMLRG- 508

Query: 227 RRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMI 271
           RR  D A          E ++          +  D LD   L  I
Sbjct: 509 RRALDVAGNGRYARQLVEASEQCRDMRLAQVLDIDTLDEDRLREI 553


>gi|215425127|ref|ZP_03423046.1| hypothetical protein MtubT9_01540 [Mycobacterium tuberculosis T92]
 gi|215432851|ref|ZP_03430770.1| hypothetical protein MtubE_19828 [Mycobacterium tuberculosis
           EAS054]
 gi|219559969|ref|ZP_03539045.1| hypothetical protein MtubT1_22617 [Mycobacterium tuberculosis T17]
 gi|260198923|ref|ZP_05766414.1| hypothetical protein MtubT4_01954 [Mycobacterium tuberculosis T46]
 gi|289441310|ref|ZP_06431054.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289572126|ref|ZP_06452353.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289748401|ref|ZP_06507779.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289756002|ref|ZP_06515380.1| ATPase [Mycobacterium tuberculosis EAS054]
 gi|289414229|gb|EFD11469.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289545881|gb|EFD49528.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289688988|gb|EFD56417.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289696589|gb|EFD64018.1| ATPase [Mycobacterium tuberculosis EAS054]
          Length = 573

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 72/285 (25%), Positives = 104/285 (36%), Gaps = 27/285 (9%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEA--CSNLKVFIEAAKARAEALD--HVLF 59
           RE LL+   ++ D  I L R +       Q+E    + L   + AAK    A    H++F
Sbjct: 279 RERLLAEAQAELDRQIGLTRVKN------QIERYRAATLMARVRAAKGMKVAQPSKHMIF 332

Query: 60  VGPPGLGKTTLAQVVARE-LGVNFRSTSGPVIAKAGDLAALLTNLE----DRDV------ 108
            GPPG GKTT+A+VVA    G+   +    V     D  A           + +      
Sbjct: 333 TGPPGTGKTTIARVVANILAGLGVIAEPKLVETSRKDFVAEYEGQSAVKTAKTIDQALGG 392

Query: 109 -LFIDEIHRLSIIVEEILYPAMEDFQLDLMV-GEGPSARSVKINLSRFTLIAATTRVGLL 166
            LFIDE + L    +    P  ++    L+   E    R V I     + I    R+   
Sbjct: 393 VLFIDEAYALVQERDGRTDPFGQEALDTLLARMENDRDRLVVIIAGYSSDID---RLLET 449

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
              L+ RF   I  + Y  E+L  I    A     A+T EAA      ++   +   R  
Sbjct: 450 NEGLRSRFATRIEFDTYSPEELLEIANVIAAADDSALTAEAAENFLQAAKQLEQRMLRG- 508

Query: 227 RRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMI 271
           RR  D A          E ++          +  D LD   L  I
Sbjct: 509 RRALDVAGNGRYARQLVEASEQCRDMRLAQVLDIDTLDEDRLREI 553


>gi|169775759|ref|XP_001822346.1| cell division control protein 48 [Aspergillus oryzae RIB40]
 gi|238502409|ref|XP_002382438.1| cell division control protein Cdc48 [Aspergillus flavus NRRL3357]
 gi|83771081|dbj|BAE61213.1| unnamed protein product [Aspergillus oryzae]
 gi|220691248|gb|EED47596.1| cell division control protein Cdc48 [Aspergillus flavus NRRL3357]
          Length = 821

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 48/258 (18%), Positives = 86/258 (33%), Gaps = 17/258 (6%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLED 105
           +    +L  GPPG GKT +A+ VA E G  F   +GP I          +L       E 
Sbjct: 254 KPPRGILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEK 313

Query: 106 RD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
               ++FIDEI  ++   E+             +V +  +        S   ++AAT R 
Sbjct: 314 NSPAIIFIDEIDSIAPKREK-----TNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRP 368

Query: 164 GLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRI 221
             +   L+   RF   + +   +      I+Q   K   L    +     A         
Sbjct: 369 NSIDPALRRFGRFDREVDIGIPDPTGRLEIMQIHTKNMKLGEDVDLETIAAETHGYVGSD 428

Query: 222 AGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVG 281
              L        +    K    ++ +  +    +D +G    + RY   ++       V 
Sbjct: 429 LASLCSEAAM--QQIREKMDLIDLDEDTIDAEVLDSLGVTMENFRYALGVSNPSALREVA 486

Query: 282 IETISAGLSEPRDAIEDL 299
           +  +     E    +E++
Sbjct: 487 VVEVPNVRWEDIGGLEEV 504



 Score = 49.3 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 61/156 (39%), Gaps = 12/156 (7%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--V 108
           VLF GPPG GKT LA+ VA E   NF S  GP +          ++  +          V
Sbjct: 533 VLFYGPPGTGKTMLAKAVANECAANFISVKGPELLSMWFGESESNIRDIFDKARAAAPCV 592

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +F+DE+  ++      +  A      D +V +  +      +     +I AT R   L  
Sbjct: 593 VFLDELDSIAKSRGGSVGDA--GGASDRVVNQLLTEMDGMTSKKNVFVIGATNRPEQLDA 650

Query: 169 PLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLA 202
            L    R    + +   +    + I++   + T +A
Sbjct: 651 ALVRPGRLDTLVYVPLPDQASREGILKAQLRKTPVA 686


>gi|33568023|emb|CAE31936.1| DNA polymerase III subunit Tau [Bordetella bronchiseptica RB50]
          Length = 743

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 52/273 (19%), Positives = 93/273 (34%), Gaps = 37/273 (13%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPR+ +   GQ      L   ++  +     L H  LF G  G+GKTTL++++A+ L   
Sbjct: 56  RPRSFDTLIGQDHVVRALTHALDTQR-----LHHAWLFTGTRGVGKTTLSRILAKSLNCE 110

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAMEDFQL 134
              TS P     G   A       R V +++        +  ++ ++E+ +Y        
Sbjct: 111 NGITSKP----CGQCRACTEIDAGRFVDYLELDAASNRGVEEMTQLLEQAVYAPGAGRFK 166

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             M+ E             ++++        I ATT    +   +  R  +   L     
Sbjct: 167 VYMIDEVHMLTGHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPP 225

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           + +   +Q       +     A   I   + G+ R A  L     D A    A  ++ E 
Sbjct: 226 DAIVGHLQAVLGEEQIGFEVPALRLIGQAAGGSMRDALSL----TDQAIAYSAGNLSEEA 281

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
               L  +    +      +R L  +A     G
Sbjct: 282 VRGMLGTIDQRHL------VRLLDALASGDAAG 308


>gi|31795042|ref|NP_857535.1| hypothetical protein Mb3898 [Mycobacterium bovis AF2122/97]
 gi|121639786|ref|YP_980010.1| hypothetical protein BCG_3931 [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|224992281|ref|YP_002646971.1| hypothetical protein JTY_3933 [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|31620640|emb|CAD96084.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
 gi|121495434|emb|CAL73921.1| Conserved hypothetical protein [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|224775397|dbj|BAH28203.1| hypothetical protein JTY_3933 [Mycobacterium bovis BCG str. Tokyo
           172]
          Length = 573

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 72/285 (25%), Positives = 104/285 (36%), Gaps = 27/285 (9%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEA--CSNLKVFIEAAKARAEALD--HVLF 59
           RE LL+   ++ D  I L R +       Q+E    + L   + AAK    A    H++F
Sbjct: 279 RERLLAEAQAELDRQIGLTRVKN------QIERYRAATLMARVRAAKGMKVAQPSKHMIF 332

Query: 60  VGPPGLGKTTLAQVVARE-LGVNFRSTSGPVIAKAGDLAALLTNLE----DRDV------ 108
            GPPG GKTT+A+VVA    G+   +    V     D  A           + +      
Sbjct: 333 TGPPGTGKTTIARVVANILAGLGVIAEPKLVETSRKDFVAEYEGQSAVKTAKTIDQALGG 392

Query: 109 -LFIDEIHRLSIIVEEILYPAMEDFQLDLMV-GEGPSARSVKINLSRFTLIAATTRVGLL 166
            LFIDE + L    +    P  ++    L+   E    R V I     + I    R+   
Sbjct: 393 VLFIDEAYALVQERDGRTDPFGQEALDTLLARMENDRDRLVVIIAGYSSDID---RLLET 449

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
              L+ RF   I  + Y  E+L  I    A     A+T EAA      ++   +   R  
Sbjct: 450 NEGLRSRFATRIEFDTYSPEELLEIANVIAAADDSALTAEAAENFLQAAKQLEQRMLRG- 508

Query: 227 RRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMI 271
           RR  D A          E ++          +  D LD   L  I
Sbjct: 509 RRALDVAGNGRYARQLVEASEQCRDMRLAQVLDIDTLDEDRLREI 553


>gi|15611004|ref|NP_218385.1| hypothetical protein Rv3868 [Mycobacterium tuberculosis H37Rv]
 gi|15843498|ref|NP_338535.1| AAA family ATPase [Mycobacterium tuberculosis CDC1551]
 gi|148663735|ref|YP_001285258.1| hypothetical protein MRA_3907 [Mycobacterium tuberculosis H37Ra]
 gi|148825076|ref|YP_001289830.1| hypothetical protein TBFG_13903 [Mycobacterium tuberculosis F11]
 gi|167967458|ref|ZP_02549735.1| hypothetical protein MtubH3_05242 [Mycobacterium tuberculosis
           H37Ra]
 gi|215405924|ref|ZP_03418105.1| hypothetical protein Mtub0_19988 [Mycobacterium tuberculosis
           02_1987]
 gi|215413796|ref|ZP_03422464.1| hypothetical protein Mtub9_20610 [Mycobacterium tuberculosis
           94_M4241A]
 gi|218755654|ref|ZP_03534450.1| hypothetical protein MtubG1_20484 [Mycobacterium tuberculosis GM
           1503]
 gi|253800918|ref|YP_003033920.1| hypothetical protein TBMG_03916 [Mycobacterium tuberculosis KZN
           1435]
 gi|254233356|ref|ZP_04926682.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|254366412|ref|ZP_04982456.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254548872|ref|ZP_05139319.1| hypothetical protein Mtube_00135 [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|289556137|ref|ZP_06445347.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
 gi|289747711|ref|ZP_06507089.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289764058|ref|ZP_06523436.1| ATPase [Mycobacterium tuberculosis GM 1503]
 gi|297636553|ref|ZP_06954333.1| hypothetical protein MtubK4_20610 [Mycobacterium tuberculosis KZN
           4207]
 gi|297733548|ref|ZP_06962666.1| hypothetical protein MtubKR_20755 [Mycobacterium tuberculosis KZN
           R506]
 gi|298527341|ref|ZP_07014750.1| ATPase, AAA family [Mycobacterium tuberculosis 94_M4241A]
 gi|306778761|ref|ZP_07417098.1| hypothetical protein TMBG_02408 [Mycobacterium tuberculosis
           SUMu002]
 gi|307086666|ref|ZP_07495779.1| hypothetical protein TMLG_00364 [Mycobacterium tuberculosis
           SUMu012]
 gi|313660879|ref|ZP_07817759.1| hypothetical protein MtubKV_20750 [Mycobacterium tuberculosis KZN
           V2475]
 gi|7388391|sp|O69733|ECCA1_MYCTU RecName: Full=ESX-1 secretion system protein EccA1; AltName:
           Full=ESX conserved component A1; AltName: Full=Type VII
           secretion system protein EccA1; Short=T7SS protein EccA1
 gi|2960220|emb|CAA17960.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv]
 gi|13883872|gb|AAK48349.1| ATPase, AAA family [Mycobacterium tuberculosis CDC1551]
 gi|124603149|gb|EAY61424.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|134151924|gb|EBA43969.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148507887|gb|ABQ75696.1| conserved hypothetical protein [Mycobacterium tuberculosis H37Ra]
 gi|148723603|gb|ABR08228.1| conserved hypothetical protein [Mycobacterium tuberculosis F11]
 gi|253322422|gb|ACT27025.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
           1435]
 gi|289440769|gb|EFD23262.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
 gi|289688239|gb|EFD55727.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289711564|gb|EFD75580.1| ATPase [Mycobacterium tuberculosis GM 1503]
 gi|298497135|gb|EFI32429.1| ATPase, AAA family [Mycobacterium tuberculosis 94_M4241A]
 gi|308328243|gb|EFP17094.1| hypothetical protein TMBG_02408 [Mycobacterium tuberculosis
           SUMu002]
 gi|308363932|gb|EFP52783.1| hypothetical protein TMLG_00364 [Mycobacterium tuberculosis
           SUMu012]
 gi|323717451|gb|EGB26655.1| hypothetical protein TMMG_00363 [Mycobacterium tuberculosis
           CDC1551A]
 gi|326905704|gb|EGE52637.1| hypothetical protein TBPG_03666 [Mycobacterium tuberculosis W-148]
 gi|328460646|gb|AEB06069.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
           4207]
          Length = 573

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 72/285 (25%), Positives = 104/285 (36%), Gaps = 27/285 (9%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEA--CSNLKVFIEAAKARAEALD--HVLF 59
           RE LL+   ++ D  I L R +       Q+E    + L   + AAK    A    H++F
Sbjct: 279 RERLLAEAQAELDRQIGLTRVKN------QIERYRAATLMARVRAAKGMKVAQPSKHMIF 332

Query: 60  VGPPGLGKTTLAQVVARE-LGVNFRSTSGPVIAKAGDLAALLTNLE----DRDV------ 108
            GPPG GKTT+A+VVA    G+   +    V     D  A           + +      
Sbjct: 333 TGPPGTGKTTIARVVANILAGLGVIAEPKLVETSRKDFVAEYEGQSAVKTAKTIDQALGG 392

Query: 109 -LFIDEIHRLSIIVEEILYPAMEDFQLDLMV-GEGPSARSVKINLSRFTLIAATTRVGLL 166
            LFIDE + L    +    P  ++    L+   E    R V I     + I    R+   
Sbjct: 393 VLFIDEAYALVQERDGRTDPFGQEALDTLLARMENDRDRLVVIIAGYSSDID---RLLET 449

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
              L+ RF   I  + Y  E+L  I    A     A+T EAA      ++   +   R  
Sbjct: 450 NEGLRSRFATRIEFDTYSPEELLEIANVIAAADDSALTAEAAENFLQAAKQLEQRMLRG- 508

Query: 227 RRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMI 271
           RR  D A          E ++          +  D LD   L  I
Sbjct: 509 RRALDVAGNGRYARQLVEASEQCRDMRLAQVLDIDTLDEDRLREI 553


>gi|315039979|ref|XP_003169367.1| ATPase family AAA domain-containing protein 1-B [Arthroderma
           gypseum CBS 118893]
 gi|311346057|gb|EFR05260.1| ATPase family AAA domain-containing protein 1-B [Arthroderma
           gypseum CBS 118893]
          Length = 417

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 85/246 (34%), Gaps = 21/246 (8%)

Query: 24  PRTLEEFTGQVEACSNLK----------VFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           P + ++  G  +    LK               + +   A   VL  GPPG GKT LA+ 
Sbjct: 107 PVSFDDIGGLEDIIEELKESVIYPLTMPQLYRTSSSLLSAPSGVLLYGPPGCGKTMLAKA 166

Query: 74  VARELGVNFRSTSGPVIAKA-----GDLAALLTNLEDR---DVLFIDEIHRLSIIVEEIL 125
           +A E G  F +     + +        L   + +L  +    ++FIDEI  +        
Sbjct: 167 LAHESGACFINLHISTLTEKWYGDSNKLVNAVFSLARKLEPSIVFIDEIDAVLGTRRSGE 226

Query: 126 YPAMEDFQLDLMVG-EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           + A    + + M   +G ++ +      R  L+ AT R+  +   +  R      +    
Sbjct: 227 HEASGMVKAEFMTHWDGLTSANAMGQPQRVLLLGATNRIQDIDEAILRRMPKKFPVTLPL 286

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
               + I+    K T +   D  A  +     G       +    RD A V   + I  +
Sbjct: 287 APQRQRILSLVLKDTKVDKDDFDASYLVKVMEGM--SGSDIKEACRDAAMVPVRELIREK 344

Query: 245 IADAAL 250
               A+
Sbjct: 345 RDAGAM 350


>gi|332654603|ref|ZP_08420346.1| DNA polymerase III, gamma and tau subunits [Ruminococcaceae
           bacterium D16]
 gi|332516567|gb|EGJ46173.1| DNA polymerase III, gamma and tau subunits [Ruminococcaceae
           bacterium D16]
          Length = 604

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 64/315 (20%), Positives = 113/315 (35%), Gaps = 40/315 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPRT ++  GQ      LK  +   +     L H  LF G  G GKTT A++++R +   
Sbjct: 10  RPRTFDDVVGQEHITQTLKQQVSGGR-----LSHAYLFTGTRGTGKTTCAKILSRAVNCQ 64

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQLDL 136
                 P       L   + N    DVL +D      + ++  + +E +Y      +   
Sbjct: 65  SPVNGNPCNQCPACLG--IENGSILDVLELDAASNNGVDQVRALRDEAVYTPAAVKKRVY 122

Query: 137 MVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           +V E             + ++   +    I ATT +  +   ++ R              
Sbjct: 123 IVDEVHMLSTPAFNALLKILEEPPAHLMFILATTELHKVPATIKSRCQQFSFKRIL-PGQ 181

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           +   +   A+  G+ +T+E A  ++  + G  R A  LL +     +    + I   +  
Sbjct: 182 IAQRLGYVAQQEGIDLTEEGAALLSRLADGGLRDALSLLDQCAGGGQRVDEQEILDTLGL 241

Query: 248 AALLRLAIDKMGFDQLD-LRYLTMIARNF-GGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
           A  L  A       Q D    L  ++R +  G  VG     + LSE            + 
Sbjct: 242 AGNLETAKLMGQLAQRDTAAALETLSRLYRNGKDVG-----SVLSELSG---------LA 287

Query: 306 QQGFIQRT-PRGRLL 319
           +   +++T PRG   
Sbjct: 288 RDLLLRKTAPRGGAA 302


>gi|296454485|ref|YP_003661628.1| vesicle-fusing ATPase [Bifidobacterium longum subsp. longum JDM301]
 gi|296183916|gb|ADH00798.1| Vesicle-fusing ATPase [Bifidobacterium longum subsp. longum JDM301]
          Length = 402

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 54/227 (23%), Positives = 83/227 (36%), Gaps = 30/227 (13%)

Query: 8   LSRNVSQEDADISLLR------PR-TLEEFTGQVEACSNLKVFIE-----AAKARA---E 52
           +    S  D DI   R      P  T + F G  +  +  K  IE     +A+ RA   +
Sbjct: 126 IRPGESDHDDDIKQYRITPGSDPSLTFDSFGGYEQVITRAKELIETQLGNSAQMRAIGAK 185

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLT------NLE 104
            +  V+F G PG GKT LA+++A      F   SGP I     GD    L         +
Sbjct: 186 PIKGVIFTGAPGTGKTHLARIIANVADAQFYLVSGPTIVSKYVGDSEETLRMIFAAAQAD 245

Query: 105 DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164
            R ++F DEI  ++   E        +     +V +  +      +     ++AAT R+ 
Sbjct: 246 KRAIIFFDEIDSIASSREND-----TNGVGKRLVAQLLTLMDGFESKGNVVVVAATNRIE 300

Query: 165 LLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAAC 209
            +   L    RF   I        D   I+Q  A+   +      A 
Sbjct: 301 DVDPALLRPGRFDWQIPFPMPSEHDRLGILQVQARSLSIEGELPLAD 347


>gi|224049231|ref|XP_002188452.1| PREDICTED: similar to Spermatogenesis-associated protein 5, partial
           [Taeniopygia guttata]
          Length = 831

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 55/263 (20%), Positives = 94/263 (35%), Gaps = 30/263 (11%)

Query: 15  EDADISLLR------PR-TLEEFTGQVEACSNLKVFIE--------AAKARAEALDHVLF 59
            D   S +R      P+    +  G  +    LK  +E          +   +A   VL 
Sbjct: 545 NDVRPSAMREVAIDVPKVCWSDIGGLEDVKLKLKQAVEWPLKHPESFIRMGIQAPKGVLL 604

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DVLFI 111
            GPPG  KT +A+ +A E G+NF +  GP +     G+    +  +  +       +LF 
Sbjct: 605 YGPPGCSKTMIAKALAHESGLNFLAVKGPELMNKYVGESERAVREIFRKARAVSPSILFF 664

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DEI  L++               D ++ +  +       L   T++AAT R   +   L 
Sbjct: 665 DEIDALAVERGNSSGAGN---VADRVLAQLLTEMDGIEQLKDVTILAATNRPDRIDKALL 721

Query: 172 D--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
              R    I +   +    K I +   +   ++     A  +    + +      + R  
Sbjct: 722 RPGRIDRIIYVPLPDAATRKEIFRLHFQSMPVSDEVCLAELVEHTQKYSGAEITAVCREA 781

Query: 230 RDFA--EVAHAKTITREIADAAL 250
              A  E  HAK+IT     +AL
Sbjct: 782 ALLALQEDIHAKSITGRHFRSAL 804



 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 42/173 (24%), Positives = 69/173 (39%), Gaps = 18/173 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLE--DRDV 108
           VL  GPPG GKT +A+ +A E+G +    +GP I           L  +          +
Sbjct: 328 VLLYGPPGTGKTMIAKAIANEVGAHVTVINGPEIISKFYGESESRLRQIFAEASLCRPSI 387

Query: 109 LFIDEIHRLSIIV---EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
           +FIDE+  L       +  +   +    L LM G G  +   ++ +     + AT R   
Sbjct: 388 IFIDELDALCPKREGTQNEVEKRVVASLLTLMDGIGSESSEGQLLV-----LGATNRPHA 442

Query: 166 LTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSR 216
           L   L+   RF   I +     +D   I+Q+  K    ++T E    +A  + 
Sbjct: 443 LDAALRRPGRFDKEIEIGIPNAQDRLDILQKLLKKVPHSLTAEQLAHLADSAH 495


>gi|269859525|ref|XP_002649487.1| replication factor C subunit [Enterocytozoon bieneusi H348]
 gi|220067038|gb|EED44506.1| replication factor C subunit [Enterocytozoon bieneusi H348]
          Length = 303

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 64/217 (29%), Gaps = 37/217 (17%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR--- 76
              RP  L    G       LK F            ++LF GPPG GKTT  + +     
Sbjct: 8   EKYRPTDLNNICGNTNIIQCLKSF------SLLDFPNMLFYGPPGTGKTTTIKALIHNKI 61

Query: 77  ------ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
                 EL  +       V  +    A   T L    ++ +DE   +S   +  L   ME
Sbjct: 62  NPINILELNASDDRGINIVRNQIKQFAETSTQLR---LVILDEADSMSRDAQNALRRIME 118

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
           D++                             V  + +P+Q R       N  + E    
Sbjct: 119 DYE-------------------NCRFCLICNYVKNIIDPIQSRCAKFKFSNMTDEEVKCH 159

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
            ++   K   +    E    +   + G  R     ++
Sbjct: 160 ALEIINKENIVIEDIEGISMLVSAANGDMRKLINDIQ 196


>gi|254436354|ref|ZP_05049860.1| ATP-dependent metallopeptidase HflB subfamily [Nitrosococcus oceani
           AFC27]
 gi|207088044|gb|EDZ65317.1| ATP-dependent metallopeptidase HflB subfamily [Nitrosococcus oceani
           AFC27]
          Length = 638

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 60/246 (24%), Positives = 98/246 (39%), Gaps = 27/246 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAA-------KARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  EA   ++  +E         K   +    VL VGPPG GKT LA+ +A E 
Sbjct: 151 TFSDVAGCDEAKEEVQELVEFLREPGRFQKLGGKIPRGVLMVGPPGTGKTLLARAIAGEA 210

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F + SG       V   A  +  +  N +     ++FIDEI  +       L    +
Sbjct: 211 KVPFFTISGSDFVEMFVGVGASRVRDMFENAKKHAPCIIFIDEIDAVGRQRGAGLGGGHD 270

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  M+ E       +       +IAAT R  +L   L    RF   + ++  +I 
Sbjct: 271 EREQTLNQMLVEMDGFEGNEG----VIVIAATNRPDVLDPALLRPGRFDRQVVVSLPDIR 326

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
               I++   +   +A       E A+ +RGTP  +G  L  + + A +  A+   R + 
Sbjct: 327 GRAQILKVHLRKVPVAED----VEPALIARGTPGFSGADLANLVNEAALFAARGSKRLVD 382

Query: 247 DAALLR 252
              L +
Sbjct: 383 MQDLEQ 388


>gi|154305492|ref|XP_001553148.1| hypothetical protein BC1G_08515 [Botryotinia fuckeliana B05.10]
 gi|150853302|gb|EDN28494.1| hypothetical protein BC1G_08515 [Botryotinia fuckeliana B05.10]
          Length = 778

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 57/251 (22%), Positives = 90/251 (35%), Gaps = 20/251 (7%)

Query: 27  LEEFTGQVE--ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRS 84
           L E   Q+E      +K     A+    A   VL  GPPG GKT LA+ VA E   NF S
Sbjct: 508 LHEVREQLEMAIVEPIKRPESFARVGITAPTGVLLWGPPGCGKTLLAKAVANESKANFIS 567

Query: 85  TSGPVIAK--AGDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
             GP +     G+    +  + +R       +LF DE+  L    E+ L  A       L
Sbjct: 568 IKGPELLNKYVGESERAVRQVFERARSSVPCILFFDELDALVPKREDSLSEASSKVVNTL 627

Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQ- 193
           +      +    I      ++ AT R  ++   +    R G  + ++    ++   I++ 
Sbjct: 628 LTELDGLSNRAGI-----YVVGATNRPDMIDPAMLRPGRLGTSVFVDLPTPDERVEILKA 682

Query: 194 --RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
             R A     A   EA   +A   R        L    +  A  A  + ++      A +
Sbjct: 683 LYRKALPLASAQEVEALGPVARDERCNGYSGADLGNLHQAAAVAALKREMSMVAQGQATM 742

Query: 252 RLAIDKMGFDQ 262
              +   G D 
Sbjct: 743 EDELKIGGADW 753



 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 57/254 (22%), Positives = 82/254 (32%), Gaps = 28/254 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEA--------AKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +LE   G       L   +           +   +    VL  GPPG GKT +A   A E
Sbjct: 185 SLENLGGVDNVIEELNELVAMPMLYPETYIRTGIQPPRGVLLHGPPGCGKTMIANAFAAE 244

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
           +GV+F   S P +           +  +    +     ++FIDEI  + +   E     M
Sbjct: 245 IGVSFIPISAPSLVAGMSGESEKKIRDVFDEAKRMAPCLVFIDEIDVI-MGKRESAQREM 303

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
           E   +  M+         K       +IAAT R   L   L+   RF   I L       
Sbjct: 304 EKRIVAQMLTSMDDMALEKTGGKPVIIIAATNRPDSLDPALRRAGRFNKEINLGVPNEAA 363

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            + I+ R      +   D     +A     TP   G  L  V   A      T   +   
Sbjct: 364 REKIL-RALTQKLVLTDDFNFHALAKM---TPGFVGADLNDVVSVA-----GTEAMKRMM 414

Query: 248 AALLRLAIDKMGFD 261
            AL +     M  D
Sbjct: 415 EALKQRTASTMELD 428


>gi|126651537|ref|ZP_01723740.1| AAA ATPase [Bacillus sp. B14905]
 gi|126591486|gb|EAZ85592.1| AAA ATPase [Bacillus sp. B14905]
          Length = 569

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 58/294 (19%), Positives = 102/294 (34%), Gaps = 50/294 (17%)

Query: 2   MDREGL-LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH---- 56
           ++ E L ++  + QE   + +     L+   G   A   L   I   K ++  +DH    
Sbjct: 278 IEDERLRITPEIEQEIEKLQM----QLDSLVGLPNAKKELHNLINFIKIQSLRVDHGLTS 333

Query: 57  ------VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRD--- 107
                 ++F G PG GKTT+A+++ +        +SG  +    D A L+     +    
Sbjct: 334 FPITYHLVFFGNPGTGKTTVARIIGQIYKHLGVLSSGHFVET--DRAGLVAGYVGQTALK 391

Query: 108 -----------VLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVK 148
                      VLFIDE + L    +        + L  AMED + DL++        ++
Sbjct: 392 VQEVVHKAKGGVLFIDEAYSLINDKQDAFGKEAIDSLLKAMEDLRDDLVIIVAGYTELME 451

Query: 149 INL-------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI-EDLKTIVQRGAKLTG 200
             L       SRF            T  L + F +    N Y+  E     ++R      
Sbjct: 452 EFLQSNPGFKSRFNHFVQFDNFS--TQELYEIFAMLCHNNDYQYGESFAHHMKRQLDQIP 509

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
           +      +    +R     ++      R+   A +   + +T E  D  L    
Sbjct: 510 IESITNFSNGRYIR-NLFEKLVTIQSNRLIQQASITKEQLMTFEEHDILLGMAE 562


>gi|118431889|ref|NP_148637.2| cell division protein CDC48 [Aeropyrum pernix K1]
 gi|116063212|dbj|BAA81490.2| cell division control protein 48, AAA family [Aeropyrum pernix K1]
          Length = 737

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 54/230 (23%), Positives = 84/230 (36%), Gaps = 26/230 (11%)

Query: 24  PR-TLEEFTGQVEACSNLKVFIEA--------AKARAEALDHVLFVGPPGLGKTTLAQVV 74
           P+ T E+  G  E    ++  +E          +   E    +L  GPPG GKT LA+ V
Sbjct: 183 PKVTYEDIGGLKEVIEKVREMVELPLRHPEIFKRLGIEPPKGILLYGPPGTGKTLLAKAV 242

Query: 75  ARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILY 126
           A E    F S +GP I           L  +    +     ++FIDEI  ++   +E++ 
Sbjct: 243 ANEADAYFISINGPEIMSKYYGESEQRLREIFEEAKKNAPSIIFIDEIDAIAPKRDEVVG 302

Query: 127 PAMEDFQLDLM-VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183
                    L+ + +G  AR          +IAAT R   +   L+   RF   I +   
Sbjct: 303 EVERRVVAQLLALMDGLEAR------GNVIVIAATNRPNAIDPALRRPGRFDREIEVPLP 356

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
           +      I+Q   +   LA   +      M    T      L R    +A
Sbjct: 357 DKHGRLEILQIHTRHMPLAEDMDLEKLAEMTKGFTGADLAALAREAAMYA 406



 Score = 49.7 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 51/231 (22%), Positives = 81/231 (35%), Gaps = 23/231 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDHV--------LFVGPPGLGKTTLAQVVARE 77
              +  G  +    L+  +E      EA   +        L  GPPG GKT LA+ VA E
Sbjct: 459 RWSDIGGLEDVKQELREVVEWPLKHPEAFTRMGIRPPRGVLLFGPPGTGKTLLAKAVATE 518

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM 129
            G NF +  GP I           +  +          V+F DEI  ++ +    +   +
Sbjct: 519 SGANFIAVRGPEILSKWVGESERAIREIFAKARQHAPAVVFFDEIDAIAPVRGTDVGTRV 578

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            +  +  ++ E         +L    +IAAT R  ++   L    R    I +   +   
Sbjct: 579 TERIVSQLLTEIDGVS----DLHDVVVIAATNRPDMVDPALMRPGRLEKMIYVPPPDFSS 634

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
              I++   +   LA  D    EIA R+ G        L R    A +   
Sbjct: 635 RLEILRIHTRKVPLA-EDVDLAEIARRTEGYTGADIEALVREASLAALRED 684


>gi|189501688|ref|YP_001957405.1| hypothetical protein Aasi_0232 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497129|gb|ACE05676.1| hypothetical protein Aasi_0232 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 691

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 59/249 (23%), Positives = 91/249 (36%), Gaps = 28/249 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  EA   +K  +E  K          +     L +GPPG GKT LA+ VA E 
Sbjct: 190 TFNDVAGLQEAKEEIKEIVEFLKEPTKFTRLGGKIPKGALLIGPPGTGKTLLAKAVAGEA 249

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG       V   A  +  L    +++   ++FIDEI  +     +   P   
Sbjct: 250 GVPFFSISGSDFVEMFVGVGAARVRDLFKQAKEKAPAIIFIDEIDAVGRSRGKGSMPGGN 309

Query: 131 DFQLD-----LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183
           D + +     L+  +G    S  I L      AAT R  +L   L    RF   I ++  
Sbjct: 310 DERENTLNSLLVEMDGFGTNSGIIIL------AATNRPDVLDPALLRPGRFDRQISIDKP 363

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           +I D + I++   K   L    +     A            +       A   +  ++  
Sbjct: 364 DIADREAILKVHMKNLKLDKEVDVKKLAAQTPGFAGAELANVSNEAALIAARKNKNSVDM 423

Query: 244 EIADAALLR 252
           +    A+ R
Sbjct: 424 QDFQDAIDR 432


>gi|295129829|ref|YP_003580492.1| Cell division protein FtsH [Propionibacterium acnes SK137]
 gi|310946756|sp|D4HA34|FTSH_PROAS RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|291376079|gb|ADD99933.1| Cell division protein FtsH [Propionibacterium acnes SK137]
          Length = 717

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 61/250 (24%), Positives = 88/250 (35%), Gaps = 26/250 (10%)

Query: 24  PR-TLEEFTGQVEACSNLKVFIE-----AAKARAEA--LDHVLFVGPPGLGKTTLAQVVA 75
           P+ T  +  G  EA   L+   E     A   R  A     VL  GPPG GKT LA+ VA
Sbjct: 162 PKSTFADVAGCQEAIDELQEIREFLAEPAKFQRVGAKIPKGVLLYGPPGTGKTLLARAVA 221

Query: 76  RELGVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
            E GV F S SG            ++  DL           ++FIDEI  +       + 
Sbjct: 222 GEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKEAAP-AIIFIDEIDAVGRHRGAGMG 280

Query: 127 PAMEDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNF 182
              ++ +  L  ++ E               LIAAT R  +L   L    RF   I +  
Sbjct: 281 GGHDEREQTLNQLLVEMDGFDVHGG----VILIAATNRPDVLDPALLRPGRFDRQIAVEA 336

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            +++    I++  A    +A   + A         T      +L         A+   I 
Sbjct: 337 PDLDGRLKILKVHAHGKPMADDVDLASIARRTPGMTGADLANVLNEAALLTARANLPVIG 396

Query: 243 REIADAALLR 252
               D A+ R
Sbjct: 397 NSELDEAIDR 406


>gi|14591590|ref|NP_143672.1| cell division control [Pyrococcus horikoshii OT3]
 gi|3258278|dbj|BAA30961.1| 798aa long hypothetical transitional endoplasmic reticulum ATPase
           [Pyrococcus horikoshii OT3]
          Length = 798

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 45/186 (24%), Positives = 69/186 (37%), Gaps = 23/186 (12%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
           T E+  G  +    ++  IE      E            VL  GPPG GKT LA+ VA E
Sbjct: 183 TYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANE 242

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM 129
               F + +GP I           L  +    E+    ++FIDEI  ++    E     +
Sbjct: 243 ANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPSIIFIDEIDAIAPKRSE-----V 297

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                  +V +  +         +  +I AT R   L   L+   RF   I +   + + 
Sbjct: 298 TGEVEKRVVAQLLALMDGLKGRGKVIVIGATNRPDALDPALRRPGRFDREIEVGVPDKQG 357

Query: 188 LKTIVQ 193
            K I+Q
Sbjct: 358 RKEILQ 363



 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 53/241 (21%), Positives = 84/241 (34%), Gaps = 25/241 (10%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVARELG 79
           ++  G  E    L+  +E      EA           VL  GPPG GKT LA+ VA E  
Sbjct: 519 DDIGGLEEVKQELREAVEWPLKYPEAFRAYGITPPKGVLLYGPPGTGKTLLAKAVATESE 578

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAMED 131
            NF +  GP +          ++  +          V+FIDEI  ++      +     +
Sbjct: 579 ANFIAVRGPEVLSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRGTDV-----N 633

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
              D ++ +  +        +   +IAAT R  +L   L    RF   I +   + E   
Sbjct: 634 RVTDRLINQLLTEMDGIQENTGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEEARF 693

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSR-GTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
            I +   +   LA  D    E+A R+   T      + R     A     +    +    
Sbjct: 694 EIFKVHTRSMPLA-DDVDLRELARRTEGYTGADIAAVCREAAMIAMRKALEKGIIKPGMK 752

Query: 249 A 249
           A
Sbjct: 753 A 753


>gi|294141554|ref|YP_003557532.1| DNA polymerase III subunits gamma and tau [Shewanella violacea
           DSS12]
 gi|293328023|dbj|BAJ02754.1| DNA polymerase III, gamma and tau subunits [Shewanella violacea
           DSS12]
          Length = 943

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 56/178 (31%), Gaps = 36/178 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN- 81
           RP T E+  GQ        + +  A  +       LF G  G+GKT+LA++ A+ L    
Sbjct: 11  RPATFEQMVGQSHVL----LALTNALTQQRLHHAYLFSGTRGVGKTSLARLFAKGLNCEQ 66

Query: 82  -----------------------FRSTSGPVIAKAGDLAALLTNLEDRD------VLFID 112
                                            K  D   LL N++ R       V  ID
Sbjct: 67  GITASPCGQCSSCVEIAEGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRYKVYLID 126

Query: 113 EIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           E+H LS      L   +E+    +  ++      R     LSR       +      +
Sbjct: 127 EVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQRLPVTVLSRCLQFNLKSLTQDEIS 184


>gi|197335469|ref|YP_002155558.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           fischeri MJ11]
 gi|238690274|sp|B5FBZ9|CLPX_VIBFM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|197316959|gb|ACH66406.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           fischeri MJ11]
          Length = 428

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 40/150 (26%), Positives = 64/150 (42%), Gaps = 30/150 (20%)

Query: 4   REGLLSRNVSQEDADISLLRPRT----LEEF-TGQVEACSNLKVFIEAAKARAEALD--- 55
           RE L    +S +++   L  PR     L+++  GQ  A   L V +     R    D   
Sbjct: 50  REELKDNTLSPKESSEELPTPRNIREHLDDYVIGQEHAKKVLAVAVYNHYKRLRNGDTTK 109

Query: 56  --------HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL 103
                   ++L +GP G GKT LA+ +AR L V F       + +AG    D+  ++  L
Sbjct: 110 DGVELGKSNILLIGPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKL 169

Query: 104 ----------EDRDVLFIDEIHRLSIIVEE 123
                      +R +++IDEI ++S   E 
Sbjct: 170 LQKCDYDPAKAERGIVYIDEIDKISRKSEN 199


>gi|299140952|ref|ZP_07034090.1| ATP-dependent protease La [Prevotella oris C735]
 gi|298577918|gb|EFI49786.1| ATP-dependent protease La [Prevotella oris C735]
          Length = 820

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 70/191 (36%), Gaps = 34/191 (17%)

Query: 32  GQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           G  +    +  +I   K R +    +L   GPPG+GKT+L + +A  +   +   S   +
Sbjct: 349 GMEKVKERILEYISVLKLRGDLKSPILCLYGPPGVGKTSLGKSIAEAMNRKYVRMSLGGL 408

Query: 91  AKAGDLA------------ALLTNLED----RDVLFIDEIHRL---------SIIVEEIL 125
               ++              ++ N++       V  +DEI ++         S  + E+L
Sbjct: 409 HDESEIRGHRRTYIGAMPGRIIKNIQKAGSSNPVFILDEIDKVTQNTINGDPSSALLEVL 468

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
            P   +   D  +        V  +LS+   IA    +  +  PL DR  +     +   
Sbjct: 469 DPEQNNAFHDNYL-------DVDYDLSKVLFIATANDLNTIPRPLLDRMEVIEVSGYITE 521

Query: 186 EDLKTIVQRGA 196
           E +  I +R  
Sbjct: 522 EKI-EIAKRHL 531


>gi|258511606|ref|YP_003185040.1| Vesicle-fusing ATPase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257478332|gb|ACV58651.1| Vesicle-fusing ATPase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 503

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 60/279 (21%), Positives = 97/279 (34%), Gaps = 35/279 (12%)

Query: 7   LLSRNVSQEDADISLLRPR-TLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVL 58
           L  RN          +RP  + +E  GQ  A   L   +         A+     +  +L
Sbjct: 43  LDRRNAQSPAGRDVAVRPNVSFDEIGGQESAKRELMEALDFLRYRDRIAQLGIRPIKGIL 102

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVI---------AKAGDLAALLTNLEDRD-- 107
             GPPG GKT +A+  A      F S SG            ++  DL      L  R+  
Sbjct: 103 LTGPPGTGKTLMAKAAATYTDSVFLSASGSEFVEMYVGVGASRVRDLFRRARALAKRENK 162

Query: 108 ---VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164
              ++F+DEI  +     +  +   +     L+        S         ++AAT R  
Sbjct: 163 DSAIIFLDEIDVVGGRRGQHSHQEYDQTLNQLLTEMDGMNTSQH---PFVLVMAATNRPD 219

Query: 165 LLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
           +L   L    RF   IR++  + E    I+ R          D     IA   R T   +
Sbjct: 220 MLDPALLRPGRFDRQIRVDLPDKEGRLHIL-RIQTKNKPLAPDVDLEHIA---RETFGFS 275

Query: 223 GRLLRRVRDFAEV----AHAKTITREIADAALLRLAIDK 257
           G  L  V + A +         I +E+   A+ ++ + +
Sbjct: 276 GAQLEAVVNEAAIMALRKGESVIRQEMFRDAVDKVLMGE 314


>gi|207091826|ref|ZP_03239613.1| DNA polymerase III subunits gamma and tau [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 586

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 78/256 (30%), Gaps = 59/256 (23%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA------- 75
           RP+   E  GQ      L + ++  +         LF G  G GKT+ +++ A       
Sbjct: 9   RPKHFSELVGQESVAKTLSLALDNQRLANAY----LFSGLRGSGKTSSSRIFARALMCEE 64

Query: 76  -----------------RELGVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFID 112
                                ++     G       D+  L+             +  ID
Sbjct: 65  GPKAVPCDTCTQCQSALNNHHIDIIEMDGASNRGIDDVRNLIEQTRYKPSFGRYKIFIID 124

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H  +      L   +E+                    S    + ATT    L   +  
Sbjct: 125 EVHMFTTEAFNALLKTLEE------------------PPSHVKFLLATTDALKLPATILS 166

Query: 173 R---FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           R   F          I  LKTI++       ++    A  ++A   +G+ R    LL + 
Sbjct: 167 RTQHFRFKKIPENSVISHLKTILE----KEQVSYETSALEKLAHSGQGSLRDTITLLEQA 222

Query: 230 RDFAEVAHAKTITREI 245
            ++ + A  ++   E+
Sbjct: 223 INYCDNAITESKVAEM 238


>gi|59711404|ref|YP_204180.1| ATP-dependent protease ATP-binding subunit [Vibrio fischeri ES114]
 gi|75354361|sp|Q5E6Q4|CLPX_VIBF1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|59479505|gb|AAW85292.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Vibrio fischeri ES114]
          Length = 428

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 40/150 (26%), Positives = 64/150 (42%), Gaps = 30/150 (20%)

Query: 4   REGLLSRNVSQEDADISLLRPRT----LEEF-TGQVEACSNLKVFIEAAKARAEALD--- 55
           RE L    +S +++   L  PR     L+++  GQ  A   L V +     R    D   
Sbjct: 50  REELKDNTLSPKESSEELPTPRNIREHLDDYVIGQEHAKKVLAVAVYNHYKRLRNGDTTK 109

Query: 56  --------HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL 103
                   ++L +GP G GKT LA+ +AR L V F       + +AG    D+  ++  L
Sbjct: 110 DGVELGKSNILLIGPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKL 169

Query: 104 ----------EDRDVLFIDEIHRLSIIVEE 123
                      +R +++IDEI ++S   E 
Sbjct: 170 LQKCDYDPAKAERGIVYIDEIDKISRKSEN 199


>gi|73666836|ref|YP_302852.1| Lon-A peptidase [Ehrlichia canis str. Jake]
 gi|72393977|gb|AAZ68254.1| ATP-dependent proteinase, Serine peptidase, MEROPS family S16
           [Ehrlichia canis str. Jake]
          Length = 801

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 54/249 (21%), Positives = 86/249 (34%), Gaps = 40/249 (16%)

Query: 34  VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA 93
                 L V     K +   L     VGPPG+GKT+LA+ +A   G NF   S   I   
Sbjct: 333 ERILEFLAVLKRLKKPKGPIL---CLVGPPGVGKTSLARSIAEATGRNFIHMSLGGIHDE 389

Query: 94  GDLA------------ALLTNLED----RDVLFIDEIHRL--------SIIVEEILYPAM 129
            ++              ++  ++       +  +DEI ++        +  + E+L P  
Sbjct: 390 SEIRGHRRTYVGAMPGKIIKEMKKAKTCNPLFLLDEIDKIGSDFRGDPTAALLEVLDPEH 449

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
               +D  +        V+ +LS    I AT     L+ PL DR  I     + E E L 
Sbjct: 450 NKHFVDHYIE-------VEFDLSNVMFI-ATANTLNLSKPLIDRMEIINISGYTENEKL- 500

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            I +  A L      D    E              L+R     + V + K     +   A
Sbjct: 501 EIAK--AHLIPKLYKDHGLQEKEWSISDDA--IYHLIRMYTRESGVRNFKREIANLMRKA 556

Query: 250 LLRLAIDKM 258
           +  + I+K 
Sbjct: 557 VKEILINKE 565


>gi|17231134|ref|NP_487682.1| cell division protein [Nostoc sp. PCC 7120]
 gi|17132775|dbj|BAB75341.1| cell division protein [Nostoc sp. PCC 7120]
          Length = 628

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 62/274 (22%), Positives = 98/274 (35%), Gaps = 23/274 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
             ++  G  EA   L+  +   K         A     VL VGPPG GKT LA+ +A E 
Sbjct: 171 KFDDVAGIEEAKEELQEVVTFLKQPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEA 230

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG           A  +  L    +D    ++FIDEI  +       +    +
Sbjct: 231 GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKDNAPCIIFIDEIDAVGRQRGAGIGGGND 290

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E               +IAAT R  +L   L    RF   + ++  +I+
Sbjct: 291 EREQTLNQLLTEMDGFEGNTG----IIIIAATNRPDVLDAALLRPGRFDRQVTVDAPDIK 346

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
               ++Q  A+   L  +             T      LL            + IT    
Sbjct: 347 GRLEVLQVHARNKKLDPSVSLEAIARRTPGFTGADLANLLNEAAILTARRRKEGITLSEI 406

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV 280
           D A+ R+     G   +D +   +IA +  G  +
Sbjct: 407 DDAVDRVVAGMEGTPLVDSKSKRLIAYHEVGHAL 440


>gi|328773295|gb|EGF83332.1| hypothetical protein BATDEDRAFT_84876 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 1154

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 51/247 (20%), Positives = 89/247 (36%), Gaps = 37/247 (14%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI   K R      ++  VGPPG+GKT++ + +AR LG  F   S
Sbjct: 641 EDHYGLKDVKERILEFIAVGKLRGTVEGKIIAMVGPPGVGKTSVGKSIARALGREFYRFS 700

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              ++   ++                        +  ++ IDEI +LS   +        
Sbjct: 701 VGGLSDVAEIKGHRRTYVGAMPGKVVQALKKVQTENPLIMIDEIDKLSRGNQGDPASALL 760

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD  +        V ++LS+   +     +  +  PL DR  I I L+ 
Sbjct: 761 ELLDPEQNSSFLDHYL-------DVPLDLSKVLFVCTANTLDTIPAPLLDRMEI-ITLSG 812

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  E+   I    A       +  +          T +    L+++    + V + K   
Sbjct: 813 YVAEEKIAI----ASKYLEPASRLSCGLTEKDVTITDKAFDVLIKQYCRESGVRNLKKQI 868

Query: 243 REIADAA 249
            +I   A
Sbjct: 869 DKIFRKA 875


>gi|321399234|emb|CAM66885.2| putative peroxisome assembly protein [Leishmania infantum JPCM5]
          Length = 877

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 35/117 (29%), Positives = 50/117 (42%), Gaps = 15/117 (12%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQ 72
           + L+P    +  G  EA   L+  I+      E  +        VLF GPPG GKT LA+
Sbjct: 558 TKLQPVRWGDVGGMEEAKRELREMIQLPILHPEVFEKGMKKRTGVLFYGPPGCGKTLLAK 617

Query: 73  VVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIV 121
            VA E+ +NF S  GP +          ++  L     D    ++F DEI  L+   
Sbjct: 618 AVATEMSMNFISVKGPELINQYVGESERNIRLLFQRARDNSPCIVFFDEIDALAPAR 674


>gi|296120341|ref|YP_003628119.1| ATP-dependent metalloprotease FtsH [Planctomyces limnophilus DSM
           3776]
 gi|296012681|gb|ADG65920.1| ATP-dependent metalloprotease FtsH [Planctomyces limnophilus DSM
           3776]
          Length = 714

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 53/246 (21%), Positives = 90/246 (36%), Gaps = 23/246 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  EA   L+  +E  K               VL VGPPG GKT LA+ VA E 
Sbjct: 221 TFQDVAGIDEAVEELREVVEFLKTPEKYQALGGRIPRGVLLVGPPGTGKTLLAKAVAGEA 280

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F   SG       V   A  +  +     +R   ++FIDE+  L  +    +    +
Sbjct: 281 GVPFYGLSGSDFVEMFVGVGAARVRDMFQQAGERSPAIIFIDELDALGKVRGSGMPGGHD 340

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E     S +       ++ AT R   L   L    RF   + ++  +++
Sbjct: 341 EREQTLNALLVEMDGFSSDQS----VIVMGATNRPETLDPALMRPGRFDRHVLVDRPDVK 396

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++  A    +           +           L+      A  A+   +T    
Sbjct: 397 GREAILKVHASKVKVDDHVNLKYLARLTPGFVGADLANLVNEAALLAARANKPKVTNIEF 456

Query: 247 DAALLR 252
           + A+ R
Sbjct: 457 EEAVER 462


>gi|170580360|ref|XP_001895229.1| Lon protease homolog, mitochondrial precursor [Brugia malayi]
 gi|158597914|gb|EDP35931.1| Lon protease homolog, mitochondrial precursor, putative [Brugia
           malayi]
          Length = 939

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 57/328 (17%), Positives = 106/328 (32%), Gaps = 65/328 (19%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI     + +    +L   GPPG GKT++A+ +AR L   +   S
Sbjct: 474 EDHYGMKDVKDRILEFIAIGILKKKVSGKILCLHGPPGTGKTSIARSIARALNREYFRFS 533

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRL---------SIIV 121
              +    ++                        +  ++ IDE+ ++         S  +
Sbjct: 534 VGGMTDVAEIKGHRRTYVGAMPGKMIQCLKKVQTENPLVLIDEVDKIGGTSYHGDPSSAL 593

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
            E+L P       D           V ++LS+   I        +  PL+DR  +     
Sbjct: 594 LELLDPEQNTNFSD-------HFLDVPVDLSKVLFICTANITDTIPGPLKDRMEMIEVSG 646

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
           +   E L       A+   +    + +     + + TP     L++     + V + +  
Sbjct: 647 YVAEEKL-----NIAQSYLVPQCRKDSSLEENQLQITPEALQTLIKHYCRESGVRNLQKH 701

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED-LI 300
             +I   A  ++A                          GI    A +      IED + 
Sbjct: 702 IEKIFRKAAFKIAG-------------------------GISQEIAQVVVDNQNIEDFVG 736

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
            P          TP G ++M +AW  +G
Sbjct: 737 RPKFTSDRLYDSTPVG-VIMGLAWTAMG 763


>gi|154293396|ref|XP_001547229.1| hypothetical protein BC1G_14324 [Botryotinia fuckeliana B05.10]
 gi|150845305|gb|EDN20498.1| hypothetical protein BC1G_14324 [Botryotinia fuckeliana B05.10]
          Length = 413

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 86/244 (35%), Gaps = 25/244 (10%)

Query: 22  LRP--RTLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLA 71
           LRP      +  GQ +    +++ IE      E +          +L  GPPG  KT  A
Sbjct: 143 LRPPKVKWSDIGGQDKVKEAIQLAIETPFLHQEIMQDFGRSPTKGLLLYGPPGCSKTLTA 202

Query: 72  QVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DVLFIDEIHRLSIIVEE 123
           Q VA E+G NF +  G  +     GD    + N+  R       ++F DEI  +    + 
Sbjct: 203 QAVATEMGFNFFAVKGAELLSKYVGDSERAVRNVFSRARAAAPSIIFFDEIESIGSKRDG 262

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLN 181
                        ++    +      +L   T++AAT +   L   L    RF   I + 
Sbjct: 263 K-----NSNNGVNVLTTLLNEMDGIESLKGVTVLAATNKPQDLDLALLRPGRFDELIYVA 317

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
             +    + I++   + T +    + A    +    +      + ++  D A     K  
Sbjct: 318 PPDFAGREAIIRARQRKTTMGEDVDVAELARLTEGYSGAEMVSICQKAFDKAIERRKKCG 377

Query: 242 TREI 245
           T E 
Sbjct: 378 TMEP 381


>gi|76789059|ref|YP_328145.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis
           A/HAR-13]
 gi|237802758|ref|YP_002887952.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis
           B/Jali20/OT]
 gi|237804680|ref|YP_002888834.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|76167589|gb|AAX50597.1| DNA polymerase III subunit gamma/tau [Chlamydia trachomatis
           A/HAR-13]
 gi|231272980|emb|CAX09892.1| DNA polymerase III subunit gamma/tau [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|231273992|emb|CAX10785.1| DNA polymerase III subunit gamma/tau [Chlamydia trachomatis
           B/Jali20/OT]
          Length = 466

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 52/270 (19%), Positives = 83/270 (30%), Gaps = 58/270 (21%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
              RP    E  GQ    S LK  +   +A        +F G  G GKTTLA+V A+ L 
Sbjct: 9   RRYRPNNFSEILGQDIVVSILKNSLRLNRAAHAY----IFSGIRGTGKTTLARVFAKALN 64

Query: 80  VNFRS-------------------------TSGPVIAKAGDLAALLTNL------EDRDV 108
               +                           G       D+  +   +          +
Sbjct: 65  CQNPTQDQEPCNQCAICKEISLGTSMDVIEIDGASHRGIEDIRQINETVLFVPSKSRYKI 124

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
             IDE+H L+      L   +E+  +                        ATT +  + N
Sbjct: 125 YIIDEVHMLTKEAFNSLLKTLEEPPV------------------HVKFFLATTEIAKIPN 166

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            +  R    +       E +   +   AK  G   + EA   IA  ++G+ R A  L   
Sbjct: 167 TISSRCQKMLLKRI-SEETIIDKLATIAKQEGTETSREALLPIAKAAQGSLRDAESLYDY 225

Query: 229 VRDFAEVAHAKTITREIADAALLRLAIDKM 258
           V         +++  +    AL  L+ D +
Sbjct: 226 VVGLFP----ESLDPDSTAKALGILSEDSL 251


>gi|224120532|ref|XP_002318353.1| predicted protein [Populus trichocarpa]
 gi|222859026|gb|EEE96573.1| predicted protein [Populus trichocarpa]
          Length = 746

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 44/215 (20%), Positives = 76/215 (35%), Gaps = 37/215 (17%)

Query: 9   SRNVSQEDADISLLRPR---------TLEEFTGQVEACSNLKVFIEAAKARAE------- 52
           +  V  ++     +RP          T  +     E   +L+  +     R +       
Sbjct: 488 TPEVPPDNEFEKRIRPEVIPANEIGVTFADIGALDETKESLQELVMLPLRRPDLFNGGLL 547

Query: 53  -ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLED 105
                +L  GPPG GKT LA+ +A+E G +F + S   I          ++ AL T    
Sbjct: 548 KPCRGILLFGPPGTGKTMLAKAIAKEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAK 607

Query: 106 --RDVLFIDEIH-----RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIA 158
               ++F+DE+      R  +   E +     +F              +     R  ++A
Sbjct: 608 VSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFM-------THWDGLMTKPGERILVLA 660

Query: 159 ATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           AT R   L   +  RF   I +    IE  + I++
Sbjct: 661 ATNRPFDLDEAIIRRFERRIMVGLPSIESRERILK 695


>gi|187477417|ref|YP_785441.1| DNA polymerase III subunits gamma and tau [Bordetella avium 197N]
 gi|115422003|emb|CAJ48525.1| DNA polymerase III subunit Tau [Bordetella avium 197N]
          Length = 646

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 85/245 (34%), Gaps = 31/245 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPR+ +   GQ      L   ++  +     L H  LF G  G+GKTTL++++A+ L   
Sbjct: 11  RPRSFDTLVGQDHVVRALTHALDTQR-----LHHAWLFTGTRGVGKTTLSRILAKSLNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAMEDFQL 134
              TS P     G   A       R V +++        +  ++ ++E+ +Y        
Sbjct: 66  TGITSKP----CGVCRACTEIDAGRFVDYLELDAASNRGVEEMTQLLEQAVYAPGAGRFK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             M+ E             ++++        I ATT    +   +  R  +   L     
Sbjct: 122 VYMIDEVHMLTGHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPP 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           E +   +Q       +     A   I   + G+ R A  L     D A    A  +T E 
Sbjct: 181 ESIVGHLQAVLGQEQIGFEVPALRLIGQAASGSMRDALSL----TDQAIAYSAGNLTEEA 236

Query: 246 ADAAL 250
               L
Sbjct: 237 VRGML 241


>gi|77166027|ref|YP_344552.1| peptidase M41, FtsH [Nitrosococcus oceani ATCC 19707]
 gi|76884341|gb|ABA59022.1| membrane protease FtsH catalytic subunit [Nitrosococcus oceani ATCC
           19707]
          Length = 641

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 60/246 (24%), Positives = 98/246 (39%), Gaps = 27/246 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAA-------KARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  EA   ++  +E         K   +    VL VGPPG GKT LA+ +A E 
Sbjct: 154 TFSDVAGCDEAKEEVQELVEFLREPGRFQKLGGKIPRGVLMVGPPGTGKTLLARAIAGEA 213

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F + SG       V   A  +  +  N +     ++FIDEI  +       L    +
Sbjct: 214 KVPFFTISGSDFVEMFVGVGASRVRDMFENAKKHAPCIIFIDEIDAVGRQRGAGLGGGHD 273

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  M+ E       +       +IAAT R  +L   L    RF   + ++  +I 
Sbjct: 274 EREQTLNQMLVEMDGFEGNEG----VIVIAATNRPDVLDPALLRPGRFDRQVVVSLPDIR 329

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
               I++   +   +A       E A+ +RGTP  +G  L  + + A +  A+   R + 
Sbjct: 330 GRAQILKVHLRKVPVAED----VEPALIARGTPGFSGADLANLVNEAALFAARGSKRLVD 385

Query: 247 DAALLR 252
              L +
Sbjct: 386 MQDLEQ 391


>gi|302872970|ref|YP_003841603.1| DNA polymerase III, subunits gamma and tau [Clostridium
           cellulovorans 743B]
 gi|307686515|ref|ZP_07628961.1| DNA polymerase III subunits gamma and tau [Clostridium
           cellulovorans 743B]
 gi|302575827|gb|ADL49839.1| DNA polymerase III, subunits gamma and tau [Clostridium
           cellulovorans 743B]
          Length = 539

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 46/275 (16%), Positives = 89/275 (32%), Gaps = 37/275 (13%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPR   E  GQ +    LK  ++  +         L  G  G GKT+ A+++++ +    
Sbjct: 11  RPRNFGEVVGQSQVTVTLKNQVKNNRIAHAY----LLCGTRGTGKTSTAKILSKAVNC-- 64

Query: 83  RSTSGPVIAKAGDLAALLTNLEDR---DVLFID-----EIHRLSIIVEEILYPAMEDFQL 134
                P+  +  +   +   + +    DV  +D      +  +  I+E++ YP  E    
Sbjct: 65  ---LNPIDGEPCNECEMCKKINEGIAIDVTEMDAASHNGVDDIRNIIEDVQYPPQEAKFK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             ++ E             ++++    R   I ATT    L   +  R           +
Sbjct: 122 VYIIDEVHMLTMGAVNAFLKTLEEPPKRVLFILATTDPQKLPITILSRCQRYDFKRIRNV 181

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           +     ++       +   D A   IA    G  R A  +L    D +       +  + 
Sbjct: 182 DIQAR-LRSIVDNKNIEADDLALSFIARICDGALRDAVSIL----DQSIAMGNGVVNYDD 236

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV 280
               L  +  + +      LR    I     G  +
Sbjct: 237 VINILGIVTNEHL------LRLTECIIEKDIGKAI 265


>gi|14719366|gb|AAK73158.1| lon proteinase [Paracoccidioides brasiliensis]
          Length = 1063

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 71/192 (36%), Gaps = 33/192 (17%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI   K R      +L FVGPPG+GKT++ + +AR L   +   S
Sbjct: 534 EDHYGLKDVKDRILEFIAVGKLRGTVEGKILCFVGPPGVGKTSIGKSIARALNREYYRFS 593

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ ++    +        
Sbjct: 594 VGGLTDVAEIKGHRRTYIGALPGRVIQALKKCQTENPLILIDEVDKIGRGHQGDPSSALL 653

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           + ++LS+   +        +  PL DR  I I L+ 
Sbjct: 654 ELLDPEQNSSFLD-------HYMDISVDLSKVLFVCTANMTDTIPRPLLDRMEI-IELSG 705

Query: 183 YEIEDLKTIVQR 194
           Y  ++   I +R
Sbjct: 706 YVADEKMAIAER 717


>gi|30684767|ref|NP_850156.1| VAR2 (VARIEGATED 2); ATP-dependent peptidase/ ATPase/
           metallopeptidase/ zinc ion binding [Arabidopsis
           thaliana]
 gi|75318709|sp|O80860|FTSH2_ARATH RecName: Full=ATP-dependent zinc metalloprotease FTSH 2,
           chloroplastic; Short=AtFTSH2; AltName: Full=Protein
           VARIEGATED 2; Flags: Precursor
 gi|7650138|gb|AAF65925.1|AF135189_1 zinc dependent protease [Arabidopsis thaliana]
 gi|3201633|gb|AAC20729.1| FtsH protease (VAR2) [Arabidopsis thaliana]
 gi|330253372|gb|AEC08466.1| cell division protease ftsH-2 [Arabidopsis thaliana]
          Length = 695

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 55/274 (20%), Positives = 98/274 (35%), Gaps = 23/274 (8%)

Query: 26  TLEEFTG-----QV--EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G     Q   E    LK         A+    VL +GPPG GKT LA+ +A E 
Sbjct: 225 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAVGAKIPKGVLLIGPPGTGKTLLAKAIAGEA 284

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG           A  +  L    ++    ++F+DEI  +       +    +
Sbjct: 285 GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGND 344

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E               ++AAT R  +L + L    RF   + ++  +++
Sbjct: 345 EREQTLNQLLTEMDGFEGNTG----VIVVAATNRADILDSALLRPGRFDRQVSVDVPDVK 400

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
               I++  A                     +      LL      A      +I+ +  
Sbjct: 401 GRTDILKVHAGNKKFDNDVSLEIIAMRTPGFSGADLANLLNEAAILAGRRARTSISSKEI 460

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV 280
           D ++ R+     G    D +  +++A +  G  V
Sbjct: 461 DDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAV 494


>gi|302680046|ref|XP_003029705.1| hypothetical protein SCHCODRAFT_58751 [Schizophyllum commune H4-8]
 gi|300103395|gb|EFI94802.1| hypothetical protein SCHCODRAFT_58751 [Schizophyllum commune H4-8]
          Length = 724

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 50/197 (25%), Positives = 74/197 (37%), Gaps = 15/197 (7%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--V 108
           VL  GPPG GKT LA  +A ELGV F S S P I           L       +     +
Sbjct: 129 VLLHGPPGCGKTLLAHAIAGELGVPFISISAPSIVSGMSGESEKTLRDTFDEAKRAAPCL 188

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           LFIDEI  ++    E     ME   +   +         K +     ++ AT R   L  
Sbjct: 189 LFIDEIDAITPKR-ESAQREMERRIVAQFLTCMDDLSWEKTDNKPIIVMGATNRPDSLDA 247

Query: 169 PLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
            L+   RF   I +   + E  + I+    ++    +  E   +    ++ TP   G  L
Sbjct: 248 ALRRAGRFDHEISMGVPDEEAREQIL----RVLCAKLRLEGHFDFGALAKATPGYVGADL 303

Query: 227 RRVRDFAEVAHAKTITR 243
             +   A +   K I +
Sbjct: 304 AALTGAAGIIAVKRIFK 320



 Score = 46.6 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 41/210 (19%), Positives = 72/210 (34%), Gaps = 15/210 (7%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL  GPPG GKT LA+ VA E   +F S  GP +     G+    +  +  R       V
Sbjct: 464 VLLWGPPGCGKTLLARAVANESCASFVSVKGPELLNKYVGESERAVRQVFARARASAPCV 523

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +F DE+  L    ++ +  +       L+                  ++ AT R  ++  
Sbjct: 524 VFFDELDALVPRRDDSMSESSARVVNTLLTELDGLDSRGG-----VYVLGATNRPDMIDP 578

Query: 169 PLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
            +    R    + ++  + ++   I+    +   L      A    +R R        L 
Sbjct: 579 AMVRPGRLDKLLYVDLPDADERAEIIYTVTRKVPLDPASRPAVADIVRQRCDGYSGADLA 638

Query: 227 RRVRDFAEVAHAKTITREIADAALLRLAID 256
              R+   VA  + + R     +      D
Sbjct: 639 AVSREAGVVALRRALGRIEEMESADGGKHD 668


>gi|319763145|ref|YP_004127082.1| DNA polymerase iii, subunits gamma and tau [Alicycliphilus
           denitrificans BC]
 gi|330825208|ref|YP_004388511.1| DNA polymerase III subunits gamma and tau [Alicycliphilus
           denitrificans K601]
 gi|317117706|gb|ADV00195.1| DNA polymerase III, subunits gamma and tau [Alicycliphilus
           denitrificans BC]
 gi|329310580|gb|AEB84995.1| DNA polymerase III, subunits gamma and tau [Alicycliphilus
           denitrificans K601]
          Length = 618

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 44/252 (17%), Positives = 73/252 (28%), Gaps = 64/252 (25%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARE 77
               RP+T  E  GQ      L   +       + L H  LF G  G+GKTT+++++A+ 
Sbjct: 7   ARKYRPKTFSEMVGQEHVVQALTNALT-----QQRLHHAYLFTGTRGVGKTTVSRILAKS 61

Query: 78  LGVN-----------------------------FRSTSGPVIAKAGDLAALLTNL----- 103
           L                                +            ++  LL        
Sbjct: 62  LNCQGPDGQGGITATPCGVCPACQDIDRGRFPDYTELDAASNRGVDEVQGLLEQAVYKPV 121

Query: 104 -EDRDVLFIDEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAAT 160
                V  IDE+H L+      +   +E+    L  ++      +     LSR       
Sbjct: 122 QGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNLR 181

Query: 161 TRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPR 220
                                    E +   + R     G+A   +A   +A  +RG+ R
Sbjct: 182 PMA---------------------PETVLEHLARVLAQEGVAAEPQALRLLARAARGSMR 220

Query: 221 IAGRLLRRVRDF 232
            A  L  +   F
Sbjct: 221 DALSLTDQAIAF 232


>gi|225573316|ref|ZP_03782071.1| hypothetical protein RUMHYD_01507 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039328|gb|EEG49574.1| hypothetical protein RUMHYD_01507 [Blautia hydrogenotrophica DSM
           10507]
          Length = 686

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 56/257 (21%), Positives = 101/257 (39%), Gaps = 24/257 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEA-------LDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ EA  +L+  ++      +            L VGPPG GKT LA+ VA E 
Sbjct: 180 TFKDVAGQDEAKESLQEVVDFLHNPGKYTGIGAKLPKGALLVGPPGTGKTLLAKAVAGEA 239

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  L    +     ++FIDE+  +    +       E
Sbjct: 240 HVPFYSLSGSDFVEMFVGVGASRVRDLFEEAKKNAPCIIFIDEVDAIGKSRDSRFGGNDE 299

Query: 131 -DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            +  L+ ++ E     + K  L    ++AAT R  +L   L    RF   + ++  +++ 
Sbjct: 300 REQTLNQLLAEMDGFDTSKGLL----ILAATNRPEVLDPALLRPGRFDRRVIVDRPDLKG 355

Query: 188 LKTIVQRGAK-LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
              I++  AK +      D  A  +A        +A  ++      A       ++++  
Sbjct: 356 RIEILKVHAKDVLLDETVDFDAIALATSGAVGSDLAN-MVNEAAILAVKNGRNAVSQKDL 414

Query: 247 DAALLRLAIDKMGFDQL 263
             A+  + + K   D++
Sbjct: 415 FEAVEVVLVGKEKKDRI 431


>gi|118594959|ref|ZP_01552306.1| DNA-directed DNA polymerase [Methylophilales bacterium HTCC2181]
 gi|118440737|gb|EAV47364.1| DNA-directed DNA polymerase [Methylophilales bacterium HTCC2181]
          Length = 544

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 55/307 (17%), Positives = 96/307 (31%), Gaps = 66/307 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP++ +   GQ  A       I  A  +       LF G  G+GKTT+A+++A+ L    
Sbjct: 11  RPKSFDTLIGQESAV----QAIANALDQNRLHHAYLFNGTRGIGKTTIARILAKSLNCEQ 66

Query: 83  RSTS------------------------GPVIAKAGDLAALLTNLE------DRDVLFID 112
             +S                                ++  LL N +         V  ID
Sbjct: 67  GISSKPCLTCSACQEIDVGRYVDLIELDAASNTGVDNMIDLLENAQYAPSSGRFKVYIID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS      +   +E+                         I ATT    +   +  
Sbjct: 127 EVHMLSKSAFNAMLKTLEE------------------PPEHVKFILATTEPQKVPITVLS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R  +   L     E++ + +        +     A   IA  + G+ R A  +L    D 
Sbjct: 169 RC-LQFNLKQMTTENIASHLTSILTEEKIGSESGAIQIIAKAANGSMRDALSIL----DQ 223

Query: 233 AEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEP 292
           A    ++ I+ E     L  +  D +         +  +    G    G+  I+  + E 
Sbjct: 224 AIAYSSEKISTEKVTQMLGTIEDDILFD------IIKHLIDKNGK---GLTDIAKAMEEK 274

Query: 293 RDAIEDL 299
             + +D 
Sbjct: 275 NTSFDDA 281


>gi|91762357|ref|ZP_01264322.1| DNA-directed DNA polymerase gamma/tau subunit [Candidatus
           Pelagibacter ubique HTCC1002]
 gi|91718159|gb|EAS84809.1| DNA-directed DNA polymerase  gamma/tau subunit [Candidatus
           Pelagibacter ubique HTCC1002]
          Length = 557

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 47/238 (19%), Positives = 73/238 (30%), Gaps = 54/238 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ      +   I+A K         LF G  G+GKTT A++VA+ L  + 
Sbjct: 13  RPQTFNDLIGQDVVAETISNSIKANKVPNAY----LFTGIRGIGKTTTARIVAKSLNCSN 68

Query: 83  RSTS-------------------------GPVIAKAGDLAALLT------NLEDRDVLFI 111
              +                                 D+  L+             +  I
Sbjct: 69  GIDNLCKEELCENCNAISNSNHIDVLEMDAASKTGVDDVRDLIEFSRYGPTTAKYKIFII 128

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         I ATT +  +   + 
Sbjct: 129 DEVHMLSKQAFNALLKTLEE------------------PPEYLKFIFATTEIKKIPITVV 170

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
            R           +E    I ++  +      +D+A   I   S G+ R A  LL R 
Sbjct: 171 SRCQRFDLSRIKSLELFDFI-KKIKEKENGNASDDALKLIVKISEGSVRDALSLLDRA 227


>gi|89900250|ref|YP_522721.1| DNA polymerase III subunits gamma and tau [Rhodoferax ferrireducens
           T118]
 gi|89344987|gb|ABD69190.1| DNA polymerase III, subunits gamma and tau [Rhodoferax
           ferrireducens T118]
          Length = 647

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 47/250 (18%), Positives = 86/250 (34%), Gaps = 28/250 (11%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARE 77
               RPR   E  GQ      L   +   +     L H  LF G  G+GKTT+++++A+ 
Sbjct: 7   ARKYRPRNFTEMVGQDHVVQALTNALTTQR-----LHHAYLFTGTRGVGKTTVSRILAKS 61

Query: 78  LGVNFRSTSGPVIAKA-GDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAM 129
           L        G + A   G   A +     R V + +        +  +  ++E+ +Y  +
Sbjct: 62  LNCQGPDGQGGITATPCGVCQACIDIDSGRFVDYTELDAASNRGVDEVQALLEQAVYKPV 121

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
           +      M+ E             ++++        + ATT    +   +  R  +   L
Sbjct: 122 QGRFKVFMIDEVHMLTGHAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRC-LQFNL 180

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
                E ++  +Q   +   +A    +   +A  + G+ R A  L     D A    A  
Sbjct: 181 RPIAPETIREHLQTVLQAEKVAADVPSLRLLARAAHGSMRDALSL----ADQAISFGAGQ 236

Query: 241 ITREIADAAL 250
           I        L
Sbjct: 237 IEEATVRQML 246


>gi|302653321|ref|XP_003018488.1| hypothetical protein TRV_07502 [Trichophyton verrucosum HKI 0517]
 gi|291182138|gb|EFE37843.1| hypothetical protein TRV_07502 [Trichophyton verrucosum HKI 0517]
          Length = 416

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 5/89 (5%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
                   +   RP TL++ +G  +  + +  F+++ +     L H+L  GPPG GKT+ 
Sbjct: 40  EAGDNLPWVEKYRPDTLDDVSGHQDIIATINRFVDSNR-----LPHLLLYGPPGTGKTST 94

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAAL 99
              +AR +  +       +   A D   +
Sbjct: 95  ILALARRIYGSKNMRQMVLELNASDDRGI 123


>gi|254571541|ref|XP_002492880.1| Subunit of a complex with Ctf8p that shares some subunits with
           Replication Factor C [Pichia pastoris GS115]
 gi|238032678|emb|CAY70701.1| Subunit of a complex with Ctf8p that shares some subunits with
           Replication Factor C [Pichia pastoris GS115]
 gi|328353107|emb|CCA39505.1| Chromosome transmission fidelity protein 18 homolog [Pichia
           pastoris CBS 7435]
          Length = 747

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 45/247 (18%), Positives = 81/247 (32%), Gaps = 57/247 (23%)

Query: 2   MDREGLLSRNVSQE-------DADISLLRPRTLEEFTGQV----EACSNLKVFIEAAKAR 50
           M+ + ++      +       +      RPR   E  G         + L+ + +AA   
Sbjct: 104 MELQSMVEPTQQPKRSKRTSAELWAEKWRPRNFLEVAGNERTNRHLLNWLRKWSKAA--H 161

Query: 51  AEALDH---------------VLFVGPPGLGKTTLAQVVARELGVNFRSTS------GPV 89
            E L                 +L  GPPG GKTT+A ++A++LG      +      GP 
Sbjct: 162 GEPLPSEEESVDPLQRPQKKILLIHGPPGAGKTTVAHIIAKQLGYEVAEINASDERAGPE 221

Query: 90  IAKAGDLAALLTNLEDRDVLFI-DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVK 148
           + +         +   + V  I DE+   S      +        LD++  +  S +S+ 
Sbjct: 222 VREKVHTVLTTQSFSKKPVCLIADEVDGSSEHGFIKVL-------LDIVNNDAKSTKSLH 274

Query: 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAA 208
            +        +  +   L + L  R  I I  + Y          R            A 
Sbjct: 275 YS------NLSKDKKARLRSKLLTRPIIAICNDVYT---------RSLDKLRAVSEIVAF 319

Query: 209 CEIAMRS 215
            + ++RS
Sbjct: 320 RKSSIRS 326


>gi|237753269|ref|ZP_04583749.1| zinc metallopeptidase [Helicobacter winghamensis ATCC BAA-430]
 gi|229375536|gb|EEO25627.1| zinc metallopeptidase [Helicobacter winghamensis ATCC BAA-430]
          Length = 642

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 58/251 (23%), Positives = 91/251 (36%), Gaps = 18/251 (7%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           +E     E    LK     A   A+    VL VGPPG GKT LA+ VA E  V F S SG
Sbjct: 190 DEVV---EVVDFLKNPERYATLGAKIPKGVLLVGPPGTGKTLLAKAVAGEANVPFFSVSG 246

Query: 88  P------VIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
                  V   A  +  L  N +     ++FIDEI  +          +  D +   +  
Sbjct: 247 SSFIEMFVGVGASRVRDLFENAKKEAPSIIFIDEIDAIGKSRAAGGMISGNDEREQTLNQ 306

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAK 197
                     + S   ++AAT R  +L   L    RF   + ++  + E    I+    K
Sbjct: 307 LLAEMDGFSSDASPVIVLAATNRPEVLDPALLRPGRFDRQVLVDKPDFEGRVEIL----K 362

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAG-RLLRRVRDFAEVAHAKTITREIADAALLRLAID 256
           +    +    + ++   ++ T  +AG  L   V + A +A             L  +   
Sbjct: 363 VHIKNIKLARSVDLFEVAKLTAGLAGADLANIVNEAALLAGRNNKKEVEQSDFLEAVERG 422

Query: 257 KMGFDQLDLRY 267
             G ++   R 
Sbjct: 423 IAGLEKKSRRI 433


>gi|289583038|ref|YP_003481504.1| adenosinetriphosphatase [Natrialba magadii ATCC 43099]
 gi|289532591|gb|ADD06942.1| Adenosinetriphosphatase [Natrialba magadii ATCC 43099]
          Length = 746

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 45/186 (24%), Positives = 71/186 (38%), Gaps = 24/186 (12%)

Query: 26  TLEEFTGQVEACSNLKVFIEA--------AKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           T E+  G  E    ++  IE          +   E    VL  GPPG GKT +A+ VA E
Sbjct: 224 TYEDIGGLDEELELVREMIELPLSEPELFQRLGVEPPSGVLLYGPPGTGKTLIARAVANE 283

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM 129
           +  +F + SGP I           L        +    ++F DEI  ++   ++      
Sbjct: 284 VDAHFVTISGPEIMSKYKGESEEQLRRTFEEARENAPTIIFFDEIDSIAGTRDDEGDAEN 343

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                 L + +G  AR          +I AT RV  +   L+   RF   I++   +   
Sbjct: 344 RIVGQLLTLMDGLDAR------GEVIVIGATNRVDSIDPALRRGGRFDREIQIGVPDETG 397

Query: 188 LKTIVQ 193
            K I++
Sbjct: 398 RKEILE 403



 Score = 49.3 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 75/220 (34%), Gaps = 16/220 (7%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLED 105
           E    VL  GPPG GKT LA+ +A E  VNF    GP I           +  +      
Sbjct: 525 EPPSGVLLHGPPGTGKTLLARALAGETDVNFVRVDGPEIIDRYVGESEKAIRKVFERARQ 584

Query: 106 --RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
               ++F DEI  ++    E  +   E     L+        +         ++AAT R 
Sbjct: 585 AAPSIVFFDEIDAITAARGEG-HEVTERVVSQLLTELDGMREN-----PNLVVLAATNRK 638

Query: 164 GLLTNPLQDRFGIPIRLNFYEIED--LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRI 221
             +   L     +   +   E +    + I++  ++   L    + A         T   
Sbjct: 639 DQIDPALLRPGRLDTHVYVGEPDHAAREKILEVHSRGKPLGDDVDLAELAGELEGYTGAD 698

Query: 222 AGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
              L+R     A    A   + E A+    ++ +++   +
Sbjct: 699 LEALVRDASMKAIREVADEYSPEEANERADQVVVERRHLE 738


>gi|222424645|dbj|BAH20277.1| AT2G30950 [Arabidopsis thaliana]
          Length = 695

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 55/274 (20%), Positives = 98/274 (35%), Gaps = 23/274 (8%)

Query: 26  TLEEFTG-----QV--EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G     Q   E    LK         A+    VL +GPPG GKT LA+ +A E 
Sbjct: 225 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAVGAKIPKGVLLIGPPGTGKTLLAKAIAGEA 284

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG           A  +  L    ++    ++F+DEI  +       +    +
Sbjct: 285 GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGND 344

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E               ++AAT R  +L + L    RF   + ++  +++
Sbjct: 345 EREQTLNQLLTEMDGFEGNTG----VIVVAATNRADILDSALLRPGRFDRQVSVDVPDVK 400

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
               I++  A                     +      LL      A      +I+ +  
Sbjct: 401 GRTDILKVHAGNKKFDNDVSLEIIAMRTPGFSGADLANLLNEAAILAGRRARTSISSKEI 460

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV 280
           D ++ R+     G    D +  +++A +  G  V
Sbjct: 461 DDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAV 494


>gi|195020573|ref|XP_001985221.1| GH14623 [Drosophila grimshawi]
 gi|193898703|gb|EDV97569.1| GH14623 [Drosophila grimshawi]
          Length = 999

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 39/242 (16%), Positives = 78/242 (32%), Gaps = 37/242 (15%)

Query: 32  GQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           G  +    +  FI  +  +      +L F GPPG+GKT++A+ +A  L   +   S   +
Sbjct: 515 GMEDIKKRILEFIAVSSLKGTTQGKILCFHGPPGVGKTSIAKSIANALSREYFRFSVGGM 574

Query: 91  AKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE--------EILY 126
               ++                        +  ++ IDE+ ++    +        E+L 
Sbjct: 575 TDVAEIKGHRRTYVGAMPGKLIQCLKKTKTENPLVLIDEVDKIGKGYQGDPSSALLELLD 634

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           P      LD           V ++LSR   I     +  +  PL+DR  +     +   E
Sbjct: 635 PEQNANFLD-------HYLDVPVDLSRVLFICTANVIDTIPEPLRDRMELIEMSGYVAEE 687

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
            +       A+   +            +   T      L+R     + V + +    ++ 
Sbjct: 688 KVA-----IARQYLIPQAMNDCGLTDKQVNITEDALKMLIRSYCRESGVRNLQKQIEKVI 742

Query: 247 DA 248
             
Sbjct: 743 RK 744


>gi|67900534|ref|XP_680523.1| hypothetical protein AN7254.2 [Aspergillus nidulans FGSC A4]
 gi|74680687|sp|Q5AWS6|CDC48_EMENI RecName: Full=Cell division control protein 48
 gi|40741970|gb|EAA61160.1| hypothetical protein AN7254.2 [Aspergillus nidulans FGSC A4]
          Length = 827

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 47/258 (18%), Positives = 85/258 (32%), Gaps = 17/258 (6%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLED 105
           +    +L  GPPG GKT +A+ VA E G  F   +GP I          +L       E 
Sbjct: 261 KPPRGILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEK 320

Query: 106 RD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
               ++FIDEI  ++   E+             +V +  +        S   ++AAT R 
Sbjct: 321 NSPAIIFIDEIDSIAPKREK-----TNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRP 375

Query: 164 GLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRI 221
             +   L+   RF   + +   +      I+    K   L    +     A         
Sbjct: 376 NSIDPALRRFGRFDREVDIGIPDPTGRLEILSIHTKNMKLGEDVDLETIAAETHGYVGSD 435

Query: 222 AGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVG 281
              L        +    K    ++ +  +    +D +G    + RY   ++       V 
Sbjct: 436 LASLCSEAAM--QQIREKMDLIDLDEDTIDAEVLDSLGVTMENFRYALGVSNPSALREVA 493

Query: 282 IETISAGLSEPRDAIEDL 299
           +  +     E    +E++
Sbjct: 494 VVEVPNVRWEDIGGLEEV 511



 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 46/219 (21%), Positives = 83/219 (37%), Gaps = 16/219 (7%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--V 108
           VLF GPPG GKT LA+ VA E   NF S  GP +          ++  +          V
Sbjct: 540 VLFYGPPGTGKTMLAKAVANECAANFISVKGPELLSMWFGESESNIRDIFDKARAAAPCV 599

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +F+DE+  ++      +  A      D +V +  +      +     +I AT R   L  
Sbjct: 600 VFLDELDSIAKSRGGSVGDA--GGASDRVVNQLLTEMDGMTSKKNVFVIGATNRPEQLDA 657

Query: 169 PLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
            L    R    + +   +    + I++   + T +A   +     +     +    G + 
Sbjct: 658 ALVRPGRLDTLVYVPLPDQASREGILKAQLRKTPVASDVDIEFIASKTHGFSGADLGFVT 717

Query: 227 RRVRDFA--EVAHAKTITREIADAALL--RLAIDKMGFD 261
           +R    A  E   A+   ++  +AA    ++  ++ G D
Sbjct: 718 QRAVKLAIKESISAEIERQKQREAAGEDVKMEDEEEGED 756


>gi|320164596|gb|EFW41495.1| Rca1p [Capsaspora owczarzaki ATCC 30864]
          Length = 1070

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 93/244 (38%), Gaps = 21/244 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  E    +  F++            A+    ++  GPPG GKT +A+ +A E 
Sbjct: 577 TFADVAGLSEVKVEVTEFVDMLSKPDRFRALGAKVPRGLMLTGPPGTGKTLIAKAIAGES 636

Query: 79  GVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           GVNF S +G            A+  DL A         V++IDEI  +         P  
Sbjct: 637 GVNFISAAGTDFVEMVVGVGPARVRDLFAT-AKANKPCVIYIDEIDAIGKTRSSAKRPMG 695

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            + + +  + +          L    ++A+T RV +L   L    RF   + +   ++ +
Sbjct: 696 GNSERENTLNQLLVQMDGFNPLEDVLVLASTNRVDVLDPALLRPGRFDRQVHVGLPDMRE 755

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            + I+    +   L +  E   E    ++ TP ++G  L  + + A +   + +   +  
Sbjct: 756 RREILHVHMQRLKLDMPMEQYSERI--AQLTPGLSGAHLANICNEAALHAGRHLKPAVTM 813

Query: 248 AALL 251
           A   
Sbjct: 814 ADFD 817


>gi|294672830|ref|YP_003573446.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Prevotella
           ruminicola 23]
 gi|294473076|gb|ADE82465.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Prevotella
           ruminicola 23]
          Length = 737

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 44/164 (26%), Positives = 74/164 (45%), Gaps = 22/164 (13%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKAR----AEALDHVLFVGPP 63
           ++ N   ++A +  L PR L++  GQ EA   +   ++ +KA      + L  +LFVGP 
Sbjct: 431 MAMNSDDDNAQLETLAPRLLQKIYGQDEAIRQVVEAVQMSKAGLLDDNKPLASLLFVGPT 490

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAA---------------LLTNLEDRD- 107
           G+GKT +A+V+A+ELG+           +   +A                LLT+   +  
Sbjct: 491 GVGKTEVARVLAKELGIALLRFDMSEYTEKHTVAKLIGSPAGYIGYEDGGLLTDAIRKTP 550

Query: 108 --VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKI 149
             VL +DEI +    +  IL   M+  +L    G     R+V +
Sbjct: 551 NCVLLLDEIEKAHQDIYNILLQVMDYARLTDNKGRKADFRNVIL 594


>gi|219120710|ref|XP_002181088.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217407804|gb|EEC47740.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 930

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 62/272 (22%), Positives = 107/272 (39%), Gaps = 43/272 (15%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPV------------IAKAGD 95
           K        VL  GP G GKT +A+ VA E G  F   +GP             + +A +
Sbjct: 359 KLGINPPRGVLLTGPSGSGKTAMARAVAAETGAYFFVINGPEVISKRAGESETNLRRAFE 418

Query: 96  LAALLTNLEDRDVLFIDEIHRLSIIVEE---ILYPAMEDFQLDLMVGEGPSARSVKINLS 152
            A    +  +  ++FIDEI  ++   E+    +   +    L LM G  P+        S
Sbjct: 419 DAEANADDYNGAIIFIDEIDSIAPKREKAGGEVEKRVVSQLLTLMDGLKPT--------S 470

Query: 153 RFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACE 210
           +  ++AAT R G++   L+   RF   + +   + +    I+Q   +   L+       +
Sbjct: 471 KVVVMAATNRPGVIEPALRRPGRFDRELDMGIPDEQGRLEILQIKMRDMRLSDD----VD 526

Query: 211 IAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTM 270
           + + +R T    G  L+++   A +        E     +  +  DK   DQ+D + L  
Sbjct: 527 LELLARNTHGYVGADLQQLCMEAAL--------ECIRGKMGLIDFDK---DQVDKKILDS 575

Query: 271 IA--RNFGGGPVGIETISAGLSEPRDAIEDLI 300
           I          +GI   S+ L E +  I D+ 
Sbjct: 576 IVIEEKHFDHAMGIVAPSS-LRESQVEIPDVH 606



 Score = 52.4 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 71/206 (34%), Gaps = 18/206 (8%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARELG 79
           ++  G  +    L   ++     AE            VLF GPPG GKT LA+ +A E G
Sbjct: 608 DDVGGLEDVKRELHETVQYPVEHAEKYIKFGMSPSKGVLFYGPPGCGKTLLAKAIANECG 667

Query: 80  VNFRSTSGPVI--AKAGDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAMED 131
            NF S  GP +     G+  A +  L D+       +L  DE+  ++         A   
Sbjct: 668 ANFISIKGPELLTQWFGESEANVRELFDKARAASPCILMFDEMDSIAKTRGSG--GAGGS 725

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
              D ++ +  +            +I AT R  +L   +     +   +     +    I
Sbjct: 726 EAGDRVINQILTEIDGVGARKNVFVIGATNRPDILDPAVIRPGRLDQLIYIPLPDLKSRI 785

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRG 217
               A L    +      E+  RS  
Sbjct: 786 AIFQAALRKAPMDPNVDLEVLARSTH 811


>gi|154318948|ref|XP_001558792.1| hypothetical protein BC1G_02863 [Botryotinia fuckeliana B05.10]
 gi|150857993|gb|EDN33185.1| hypothetical protein BC1G_02863 [Botryotinia fuckeliana B05.10]
          Length = 418

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 46/253 (18%), Positives = 85/253 (33%), Gaps = 22/253 (8%)

Query: 24  PRTLEEFTGQVEACSNLK----------VFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           P   ++  G  +    LK               +     A   VL  GPPG GKT LA+ 
Sbjct: 110 PVGFDDIGGLDDIIEELKESVIYPLTMPHLYSHSSPLLSAPSGVLLYGPPGCGKTMLAKA 169

Query: 74  VARELGVNFRSTSGPVIAKA------GDLAALLTNLE--DRDVLFIDEIHRLSIIVEEIL 125
           +A E G  F +     + +         + A+ +        ++FIDEI  +        
Sbjct: 170 LAHESGACFINLHISTLTEKWYGDSNKLVRAVFSLARKLQPSIVFIDEIDAVLGQRRSGE 229

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLS-RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           + A    + + M        S K  L  R  ++ AT R+  +   +  R      ++   
Sbjct: 230 HEASGMVKAEFMTLWDGLTSSNKSGLPARIMILGATNRIQDIDEAILRRMPKKFPVSLPS 289

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
               + I+     +     TD    +I   +R    ++G  ++     A +   +   RE
Sbjct: 290 NSQRRRILN---LILKDTKTDPNNFDIEYLTRVMAGMSGSDIKEACRDAAMVPVREFIRE 346

Query: 245 IADAALLRLAIDK 257
             +  +    +D 
Sbjct: 347 QRERGMSMSGVDH 359


>gi|159041543|ref|YP_001540795.1| AAA family ATPase, CDC48 subfamily protein [Caldivirga
           maquilingensis IC-167]
 gi|157920378|gb|ABW01805.1| AAA family ATPase, CDC48 subfamily [Caldivirga maquilingensis
           IC-167]
          Length = 852

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 57/289 (19%), Positives = 98/289 (33%), Gaps = 23/289 (7%)

Query: 28  EEFTGQVEACSNLKVFIE-AAKARA-------EALDHVLFVGPPGLGKTTLAQVVARELG 79
           ++  G       L+  +E   K R        E    +L  GPPG GKT LA+ VA E G
Sbjct: 474 DDIGGYASVKQELRETVEWPIKYRVYFDELGVEPPKGILLFGPPGTGKTLLAKAVANESG 533

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMED 131
            NF +  GP I           +  +          V+F DEI  ++      +    + 
Sbjct: 534 ANFIAVRGPEILSKWFGESEKAIREIFKKARMAAPCVVFFDEIDAIAPARGYRI----DS 589

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
              D +V +  +       L    +IAAT R  +L   L    RF   I +   + E + 
Sbjct: 590 GATDRIVNQILAEMDGIAPLRNVVVIAATNRPDILDPALLRPGRFDRIIYVPPPDKEAIL 649

Query: 190 TIVQ-RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
            I +     +   +  +      ++R +   +   +L  R  +F         +      
Sbjct: 650 EIFKVHTRHIKLSSEVNVQELADSIRVKSIEKALTQLNIRAHEFKTKVTDAVESALTELD 709

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE 297
           +      DK    +      +M++     G  G+ T+   +    D  E
Sbjct: 710 SSDIKQGDKAKLIEALNNVKSMLSNGEFKGSKGLRTMIDVVKILVDVFE 758



 Score = 52.8 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 36/117 (30%), Positives = 49/117 (41%), Gaps = 17/117 (14%)

Query: 24  PR-TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVV 74
           PR T E+     EA   ++  +E      E   H        VL +GPPG GKT LA+ V
Sbjct: 175 PRVTWEDIGDLEEAKQKIRELVELPLKHPELFRHLGIEPPKGVLLIGPPGTGKTLLAKAV 234

Query: 75  ARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEE 123
           A E    F S +GP I           L  +    +     ++FIDEI  ++   EE
Sbjct: 235 ANEADAYFVSINGPEIVSKYYGESEARLREIFDEAKRNAPAIIFIDEIDSIAPKREE 291


>gi|145532910|ref|XP_001452205.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124419893|emb|CAK84808.1| unnamed protein product [Paramecium tetraurelia]
          Length = 457

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 62/194 (31%), Gaps = 25/194 (12%)

Query: 15  EDADISLL-RPRTLEEFTGQVEACS--------NLK--VFIEAAKARAEALDHVLFVGPP 63
           E   I ++ RP    +  G               L+     E   A    L   L  GPP
Sbjct: 156 ESDIIEIMDRPTQWTDIVGLDHVRDQVVEIALWPLENPKLFEGIIAPGSGL---LLFGPP 212

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIH 115
           G GKT + + +A E    F S     +           + AL      R   V+F DEI 
Sbjct: 213 GTGKTMIGKAIASEGKATFFSIKASTLTSKYVGEGEKTVRALFALAAQRQPSVIFFDEID 272

Query: 116 RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
            L     E         + + MV    + R       R   I AT R   L + ++ RF 
Sbjct: 273 SLLCARSEKDNETSRQIKTEFMVQLEGATRGGC---ERIVFIGATNRPQELDDAIKRRFQ 329

Query: 176 IPIRLNFYEIEDLK 189
             I +     E  +
Sbjct: 330 KKIYIPLPNQEGRQ 343


>gi|119854898|ref|YP_935503.1| ATPase central domain-containing protein [Mycobacterium sp. KMS]
 gi|119697616|gb|ABL94688.1| AAA ATPase, central domain protein [Mycobacterium sp. KMS]
          Length = 593

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 55/237 (23%), Positives = 87/237 (36%), Gaps = 48/237 (20%)

Query: 25  RTLEEFTGQVEACSNLKVFI-----------EAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           R L+E  G       + V+            +  +  +   +H++  GPPG  KTT A++
Sbjct: 302 RRLDELIGLEGPKEQIAVWRTEIQIDQLMAAQGDETSSTGENHMVLEGPPGTAKTTFARI 361

Query: 74  VAR---ELGVNFRSTSGPVIAK---AGDLAALLTNLED------RDVLFIDEIHRLSIIV 121
           VA     LG   R     V  +    G ++     +++        VLFIDE +RL    
Sbjct: 362 VAEILFGLGKIQRPEVMEVTEEDLVVGYVSQTAQRMKEVCEEALGGVLFIDEAYRLVPET 421

Query: 122 E---------EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E           L   MEDF+  L+V      + ++  L+                 L  
Sbjct: 422 EGHSFGKDAINTLLKYMEDFRDRLVVIVAGYPKEMRRFLA-------------ANPGLAS 468

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEA---ACEIAMRSRGTPRIAGRLL 226
           RF   +    Y  +++  I +  A    +A+ +EA       A R R TP  AG  L
Sbjct: 469 RFNFTLTFTSYTADEIVAIGRHIAGKEKIAIAEEAWPMLHAEATRLRATPTDAGTAL 525


>gi|308159198|gb|EFO61741.1| Katanin [Giardia lamblia P15]
          Length = 509

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 54/244 (22%), Positives = 82/244 (33%), Gaps = 37/244 (15%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALD-----------HVLFVGPPGLGKTTLAQVV 74
           T ++  G        K  +E A      L             VL  GPPG GKT LA+ +
Sbjct: 214 TFDQIAG----LKEAKRLLEEAVVLPMLLPDFFTGVRSPWRGVLLFGPPGTGKTLLAKAI 269

Query: 75  ARELGVNFRSTSGPVIAKA------GDLAALLTNLEDR--DVLFIDEIHRL--------- 117
           A + G  F S S  VI           +  L T    R    +FIDEI  +         
Sbjct: 270 AMQAGFTFFSASASVIESKYRGEAEKMVRGLFTIARARAPSCIFIDEIDAIMSARGSGED 329

Query: 118 ---SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRF 174
              S  ++  +   M+       VG G +  S +        +AAT     L   L+ R 
Sbjct: 330 NECSRRIKAEILTQMQGVTTANGVGNGANGDSTEQEPKPVMTLAATNLPWDLDEALKRRL 389

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
              I +   + E  K +++    L  +   +    ++A R  G       +L R    A 
Sbjct: 390 EKRIYIPLPDFESRKQLLK--LNLKDITTVELDFDDLANRLEGFSGADISILVREVSMAP 447

Query: 235 VAHA 238
           +   
Sbjct: 448 LRRE 451


>gi|302387411|ref|YP_003823233.1| ATP-dependent metalloprotease FtsH [Clostridium saccharolyticum
           WM1]
 gi|302198039|gb|ADL05610.1| ATP-dependent metalloprotease FtsH [Clostridium saccharolyticum
           WM1]
          Length = 625

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 46/186 (24%), Positives = 72/186 (38%), Gaps = 19/186 (10%)

Query: 25  RTLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +T  +  GQ EA   LK  +       + A   A      L VGPPG GKT LA+ VA E
Sbjct: 175 KTFRDVAGQEEAKEALKEIVDFLHNPQKYADIGASLPKGALLVGPPGTGKTLLAKAVAGE 234

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
             V F S SG           A  +  L     ++   ++FIDEI  +    +   +   
Sbjct: 235 AHVPFFSISGSEFVEMFVGMGAAKVRDLFKQAGEKAPCIVFIDEIDTIGKKRDGGGFTGN 294

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
           ++ +  L   +  +            ++AAT R   L   L    RF   I +   ++  
Sbjct: 295 DEREQTL--NQLLAEMDGFDGRKGVVILAATNRPDSLDKALLRPGRFDRRIPVELPDLIG 352

Query: 188 LKTIVQ 193
            + I++
Sbjct: 353 REAILK 358


>gi|257388135|ref|YP_003177908.1| ATPase AAA [Halomicrobium mukohataei DSM 12286]
 gi|257170442|gb|ACV48201.1| AAA family ATPase, CDC48 subfamily [Halomicrobium mukohataei DSM
           12286]
          Length = 757

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 60/263 (22%), Positives = 96/263 (36%), Gaps = 40/263 (15%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARELG 79
           E+  G       ++  IE      E            VL  GPPG GKT +A+ VA E+ 
Sbjct: 193 EDIGGLDSELEQVREMIELPMRHPELFQQLGIEPPKGVLLHGPPGTGKTLMAKAVANEID 252

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAMED 131
            +F + SGP I           L  +    E+    ++FIDEI  ++    E      + 
Sbjct: 253 AHFTTISGPEIMSKYYGESEEQLREVFEEAEENAPAIVFIDEIDSIAPKRGE-----TQG 307

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
                +V +  S            +I AT RV  +   L+   RF   I +   + E  K
Sbjct: 308 DVERRVVAQLLSLMDGLDERGDVIVIGATNRVDAIDPALRRGGRFDREIEIGVPDKEGRK 367

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            I+Q   +   L+       ++   +  T    G  L ++            T+E A  A
Sbjct: 368 EILQVHTRGMPLSED----IDLESYAENTHGFVGADLAQL------------TKEGAMNA 411

Query: 250 LLRLAID-KMGFDQLDLRYLTMI 271
           L R+  D  +  D++D   L  +
Sbjct: 412 LRRIRPDIDLESDEIDAEVLESL 434



 Score = 46.6 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 39/146 (26%), Positives = 57/146 (39%), Gaps = 30/146 (20%)

Query: 2   MDREGLLSRNVSQEDADISL--LRPRTLEEFT------------GQVEACSNLKVFIE-- 45
           +D E L S  VS++D   +L  + P  L E              G  +    L+  I+  
Sbjct: 426 IDAEVLESLEVSKQDFKEALKGIEPSALREVFVEVPDTSWDSVGGLEDTKERLRETIQWP 485

Query: 46  ------AAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKA 93
                   +   +A   VL  GPPG GKT LA+ VA E   NF S  GP +         
Sbjct: 486 LEYPSVFEQMDLQAAKGVLLYGPPGTGKTLLAKAVANEAQSNFISIKGPELLNKFVGESE 545

Query: 94  GDLAALLTNLEDR--DVLFIDEIHRL 117
             +  + +   +    V+F DEI  +
Sbjct: 546 KGVREVFSKARENAPTVVFFDEIDSI 571


>gi|221635848|ref|YP_002523724.1| cell division protein FtsH [Thermomicrobium roseum DSM 5159]
 gi|310943102|sp|B9L3S8|FTSH2_THERP RecName: Full=ATP-dependent zinc metalloprotease FtsH 2
 gi|221157798|gb|ACM06916.1| cell division protein FtsH [Thermomicrobium roseum DSM 5159]
          Length = 699

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 55/252 (21%), Positives = 93/252 (36%), Gaps = 26/252 (10%)

Query: 23  RPR-TLEEFTGQVEACSNLKVFIEAAKARAEA-------LDHVLFVGPPGLGKTTLAQVV 74
           RP+ T  +  G+ EA + L   ++  K  A+           VL VGPPG GKT LA+ V
Sbjct: 245 RPQVTFADVAGEEEAKAELAQVVDFLKNPAKYHRIGARLPRGVLLVGPPGTGKTLLARAV 304

Query: 75  ARELGVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           A E GV F S S             ++  DL       +   ++FIDE+  +       L
Sbjct: 305 AGEAGVPFFSVSASEFVEMFVGVGASRVRDLFE-RAKAQAPSIIFIDELDAVGRQRFAGL 363

Query: 126 YPAMEDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLN 181
               ++ +  L  ++ E     +         +IAAT R  +L   L    RF   + + 
Sbjct: 364 GVGNDEREQTLNQLLVEMDGFEAHT----DVVVIAATNRPDVLDPALLRPGRFDRQVVVG 419

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
             +      I++   +   +A   +     A     +      L+      A     + +
Sbjct: 420 LPDKRGRAAILRIHTRGIPIAPDVDLEGLAAATPGFSGADLANLVNEAALVAARRGKQVV 479

Query: 242 TREIADAALLRL 253
            R   + AL ++
Sbjct: 480 DRSDFEEALDKM 491


>gi|51246949|ref|YP_066833.1| cell division protein FtsH [Desulfotalea psychrophila LSv54]
 gi|50877986|emb|CAG37826.1| probable cell division protein FtsH [Desulfotalea psychrophila
           LSv54]
          Length = 684

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 61/252 (24%), Positives = 102/252 (40%), Gaps = 27/252 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAK-------ARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  EA   L+  ++  K               VL  GPPG GKT LA+ +A E 
Sbjct: 153 TFADVAGIDEAKEELEEIVDFLKDPSKFTDLGGNIPTGVLLSGPPGTGKTLLARAIAGEA 212

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F + SG       V   A  +  +    +     ++FIDEI  +       L    +
Sbjct: 213 QVPFFTISGSDFVEMFVGVGASRVRDMFAEGKKSAPCIIFIDEIDAVGRHRGAGLGGGHD 272

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E    +S +       +IAAT R  +L   L    RF   + +   +++
Sbjct: 273 EREQTLNQLLVEMDGFQSNEG----VIVIAATNRPDVLDPALLRPGRFDRQVNVPVPDLK 328

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             K I++  A  T +A       ++ + +RGTP  +G  L  + + A +  A+T  +EI 
Sbjct: 329 GRKKILEIYAAKTKMA----PMIDLEILARGTPGFSGADLENLINEAALLAARTGKKEIN 384

Query: 247 DAALLRLAIDKM 258
              L +     M
Sbjct: 385 LELLEKAKDKIM 396


>gi|313835711|gb|EFS73425.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL037PA2]
 gi|314928383|gb|EFS92214.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL044PA1]
 gi|314970189|gb|EFT14287.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL037PA3]
 gi|328908037|gb|EGG27796.1| putative cell division protein FtsH [Propionibacterium sp. P08]
          Length = 719

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 65/276 (23%), Positives = 96/276 (34%), Gaps = 26/276 (9%)

Query: 24  PR-TLEEFTGQVEACSNLKVFIE-----AAKARAEA--LDHVLFVGPPGLGKTTLAQVVA 75
           P+ T  +  G  EA   L+   E     A   R  A     VL  GPPG GKT LA+ VA
Sbjct: 162 PKSTFADVAGCQEAIDELQEIREFLAEPAKFQRVGAKIPKGVLLYGPPGTGKTLLARAVA 221

Query: 76  RELGVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
            E GV F S SG            ++  DL           ++FIDEI  +       + 
Sbjct: 222 GEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKEAAP-AIIFIDEIDAVGRHRGAGMG 280

Query: 127 PAMEDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNF 182
              ++ +  L  ++ E               LIAAT R  +L   L    RF   I +  
Sbjct: 281 GGHDEREQTLNQLLVEMDGFDVHGG----VILIAATNRPDVLDPALLRPGRFDRQIAVEA 336

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            +++    I+Q  A    +A   + A         T      +L         A+   I 
Sbjct: 337 PDLDGRLKILQVHAHGKPMADNVDLASIARRTPGMTGADLANVLNEAALLTARANLPVIG 396

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
               D A+ R+        +L   +  ++     GG
Sbjct: 397 NAELDEAIDRVIAGPQKKTRLMNEHERLVTAYHEGG 432


>gi|224047636|ref|XP_002192150.1| PREDICTED: spastin isoform 1 [Taeniopygia guttata]
          Length = 612

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 48/237 (20%), Positives = 85/237 (35%), Gaps = 21/237 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDHV-------LFVGPPGLGKTTLAQVVAREL 78
             ++  GQ  A   L+  +     R E    +       L  GPPG GKT LA+ VA E 
Sbjct: 336 KFDDIAGQELAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES 395

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAME 130
              F + S   +           + AL     +    ++FIDE+  L     E  + A  
Sbjct: 396 NATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLCERREGEHDASR 455

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
             + + ++       S +    R  ++ AT R   L + +  RF   + ++    E    
Sbjct: 456 RLKTEFLIEFDGVQSSGE---DRILVMGATNRPQELDDAVLRRFTKRVYVSLPNEETRLI 512

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           +++    L     +     E+A  +R T   +G  L  +   A +   + +  E   
Sbjct: 513 LLK---NLLSKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVK 566


>gi|183985414|ref|YP_001853705.1| hypothetical protein MMAR_5443 [Mycobacterium marinum M]
 gi|183178740|gb|ACC43850.1| conserved hypothetical membrane protein [Mycobacterium marinum M]
          Length = 573

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 57/264 (21%), Positives = 93/264 (35%), Gaps = 33/264 (12%)

Query: 31  TGQVEACSNLKVFIEA----------AKARAEALDHVLFVGPPGLGKTTLAQVVARE-LG 79
            G     S L+ +  A              A+   H++F GPPG GKTT+A+VVA    G
Sbjct: 294 IGLSRVKSQLERYRAATMMARIREAKGMKVAQPSKHMIFTGPPGTGKTTIARVVANMLAG 353

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLE----DRDV-------LFIDEIHRLSIIVEEILYPA 128
           +   +    V     D  A           + +       LFIDE + L    +    P 
Sbjct: 354 LGVIAEPKLVETSRKDFVAEYEGQSAAKTAKTIDQALGGVLFIDEAYALVQERDGRTDPF 413

Query: 129 MEDFQLDLMV-GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
            ++    L+   E    R V I     + I    R+      L+ RF   I  + Y  E+
Sbjct: 414 GQEAMDTLLARMENDRDRLVVIIAGYSSDID---RLLETNEGLRSRFATRIEFDTYSPEE 470

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTP------RIAGRLLRRVRDFAEVAHAKTI 241
           L  I +  A      ++  AA E+   ++         R A  +    R   ++  A   
Sbjct: 471 LLEIAKVIAAGNDSTLSTAAADELLQAAKTLHERTLRGRPALDIAGNGRYARQLVEASEQ 530

Query: 242 TREI-ADAALLRLAIDKMGFDQLD 264
            R++     L   A+D     +++
Sbjct: 531 YRDMRLAQGLDIEALDVDRLQEIN 554


>gi|24652279|ref|NP_724866.1| TER94, isoform B [Drosophila melanogaster]
 gi|7303817|gb|AAF58864.1| TER94, isoform B [Drosophila melanogaster]
 gi|25012330|gb|AAN71276.1| LP12034p [Drosophila melanogaster]
 gi|220950626|gb|ACL87856.1| TER94-PB [synthetic construct]
          Length = 297

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 76/217 (35%), Gaps = 20/217 (9%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI---------AKAGDLAALLTNLEDRD 107
           VLF GPPG GKT LA+ +A E   NF S  GP +         A   D+     +     
Sbjct: 7   VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARSAAP-C 65

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           VLF DE+  ++      +  A      D ++ +  +            +I AT R  ++ 
Sbjct: 66  VLFFDELDSIAKARGGNVGDA--GGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIID 123

Query: 168 NPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
             +    R    I +   + +  + I++   + + LA   +      +    +      +
Sbjct: 124 PAILRPGRLDQLIYIPLPDDKSREAILKANLRKSPLAKEVDLTYIAKVTQGFSGADLTEI 183

Query: 226 LRRVRDFA------EVAHAKTITREIADAALLRLAID 256
            +R    A           +    E  ++A+     D
Sbjct: 184 CQRACKLAIRQAIEAEIRREKERAENQNSAMDMDEDD 220


>gi|328860731|gb|EGG09836.1| hypothetical protein MELLADRAFT_47409 [Melampsora larici-populina
           98AG31]
          Length = 382

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 62/182 (34%), Gaps = 32/182 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+ +E   GQ      L     A       L H+LF GPPG GKT+    +AR
Sbjct: 31  PWVEKYRPKNIESVEGQDATTRVL-----AKTLHRADLPHMLFYGPPGTGKTSTILALAR 85

Query: 77  -------------ELGVNFRSTSGPVIAKAGDLAAL----LTNL---EDRDVLFIDEIHR 116
                        EL  +       V  K    A +     TN        ++ +DE   
Sbjct: 86  ELFGPELMKSRVLELNASDERGISVVRDKIKSFAKVSISPATNAYPCPPFKIIILDEADS 145

Query: 117 LSIIVEEILYPAMEDFQ-------LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           ++   +  L   ME++        +   V         + +  RFT +++T  +  L   
Sbjct: 146 MTQDAQSALRRIMENYSKITRFCLICNYVTRIIEPIVSRCSKFRFTPLSSTDTLSRLNEI 205

Query: 170 LQ 171
            +
Sbjct: 206 CR 207


>gi|302784052|ref|XP_002973798.1| hypothetical protein SELMODRAFT_640 [Selaginella moellendorffii]
 gi|300158130|gb|EFJ24753.1| hypothetical protein SELMODRAFT_640 [Selaginella moellendorffii]
          Length = 494

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 78/221 (35%), Gaps = 32/221 (14%)

Query: 5   EGLLSRNVSQEDADISL--LRPRTLEEFT------------GQVEACSNLKVFIE----- 45
           E   S +V +ED +++   +RP  + E              GQ      LK  +E     
Sbjct: 232 ESASSLSVGREDFELAREKIRPSAMREVILEVPKVRWSDIGGQSAVKQQLKEIVEWPHKH 291

Query: 46  ---AAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--------AKAG 94
               A+        VL  GPPG  KT +A+ VA E G+NF +  GP +         KA 
Sbjct: 292 QDSFARIGTTPPRGVLLYGPPGCSKTMMARAVAAETGLNFIAVKGPELFSKWVGESEKAV 351

Query: 95  DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRF 154
                        V+F DEI  L++               D ++ +           +  
Sbjct: 352 RALFARAKAAAPSVVFFDEIDGLAVTRSSGGGGTDGISVEDRVMSQLLIEMDGVSPRNGV 411

Query: 155 TLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQ 193
           ++IAAT R   L   L    RF   I +   +    + I +
Sbjct: 412 SVIAATNRPDKLDPALLRPGRFDRLIYVGPPDKAARQQIFE 452



 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/106 (30%), Positives = 44/106 (41%), Gaps = 13/106 (12%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRST 85
           TL+E   Q        +     K        VL  GPPG GKT+LAQ VA+E GV     
Sbjct: 14  TLKEIV-QYSLLKPETLARYCLKRTKG----VLLYGPPGTGKTSLAQAVAKEAGVKMLVI 68

Query: 86  SGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEE 123
           +GP I           + A+  +       V+FIDE+  ++    E
Sbjct: 69  NGPEIVTEYHGESEAAMKAIFDSAAREAPSVVFIDELDAITPQRRE 114


>gi|300122395|emb|CBK22966.2| unnamed protein product [Blastocystis hominis]
          Length = 844

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 49/262 (18%), Positives = 87/262 (33%), Gaps = 38/262 (14%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARA--------EALDHVLFVGPPGLGKTTLAQVVARELG 79
           ++  G       ++  IE              +    VL  GPPG GKT LA+ VA E G
Sbjct: 206 DDVGGCRRQMEQIREMIELPLRHPQLFKTLGVKPPRGVLLYGPPGSGKTLLARAVANETG 265

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAMED 131
             F   +GP I          +L       E     ++FIDEI  ++   E+     +  
Sbjct: 266 AFFFLINGPEIMSKMAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREK-----ING 320

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
                +V +  +        S   +I AT R  ++   L+   RF   I +   +     
Sbjct: 321 EVEKRVVSQLLTLMDGIKQRSNVVVIGATNRPNVIDPALRRFGRFDREIDIGVPDEAGRL 380

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            I+    ++    +  +A+ +    ++ T    G  +  +            T       
Sbjct: 381 EIL----RIHSKNMKLDASVDPEAIAKETHGFVGADIAAL-----------CTEAAMQCI 425

Query: 250 LLRLAIDKMGFDQLDLRYLTMI 271
             ++    M  D +D   L  +
Sbjct: 426 REKMDYIDMDDDSIDAEVLASL 447



 Score = 55.9 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 54/265 (20%), Positives = 97/265 (36%), Gaps = 37/265 (13%)

Query: 2   MDREGLLSRNVSQE-------DADISLLR------PRT-LEEFTGQVEACSNLKVFIEAA 47
           +D E L S +V+Q+        A+ + LR      P T  E+  G  E    LK  ++  
Sbjct: 439 IDAEVLASLSVTQDHFRYALGKANPASLRETVVEVPTTTWEDIGGLEEVKQELKEMVQYP 498

Query: 48  --------KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--------- 90
                   K   +    VLF GPPG GKT +A+ VA E   NF S  GP +         
Sbjct: 499 VEYPEMFEKYGMDPTRGVLFYGPPGCGKTLMAKAVANECQSNFISIKGPELLTMWFGESE 558

Query: 91  AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN 150
           A   D+     +     +LF DE+  ++    + +         D ++ +  +      +
Sbjct: 559 ANVRDVFEKARSAAP-CILFFDELDSIARSRAQSVGD---SGAGDRVMNQLLTEMDGMQS 614

Query: 151 LSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAA 208
                +I AT R  ++   L    R    I +   +     +I++   + + +A   +  
Sbjct: 615 KKSVFIIGATNRPDIIDTALMRPGRLDQLIFIPMPDFASRVSILKASLRKSPIAPDVDLN 674

Query: 209 CEIAMRSRGTPRIAGRLLRRVRDFA 233
                  + +      + +R   +A
Sbjct: 675 VIAQATDKYSGADLAEICQRAVKYA 699


>gi|295100586|emb|CBK98131.1| ATPases with chaperone activity, ATP-binding subunit
           [Faecalibacterium prausnitzii L2-6]
          Length = 767

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 57/299 (19%), Positives = 101/299 (33%), Gaps = 35/299 (11%)

Query: 28  EEFTGQVEACSNLKVFIEAAKAR----AEALDHVLFVGPPGLGKTTLAQVVARELGVNFR 83
            E  GQ  A + +   I  ++         +  +LF+GP G+GKT LA+ +A     + +
Sbjct: 463 AEVVGQSRAVAAVAGAIRRSRTGLGEPGRPIGAMLFLGPTGVGKTALAKALAESWFGSEK 522

Query: 84  STSGPVIAKAG------------------DLAALLTNLEDR---DVLFIDEIHRLSIIVE 122
           +     +++                    D    LT    R    V+  DEI +    ++
Sbjct: 523 ALLKFDMSEYQEQHTVARLLGAPPGYLGHDEGGQLTEAVRRRPYSVVLFDEIEKAHPDIQ 582

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
            +L   +ED QL   +G     R+  + L+  + + A    G  + PL   FG      F
Sbjct: 583 NVLLQMLEDGQLTDSMGRKADFRNTIVLLT--SNLGARFLAGQ-SAPL--GFGAGSEAAF 637

Query: 183 Y-EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
             + E      ++  +   +   DE      +  +    IA +LL ++ + A  +  +  
Sbjct: 638 EKQSEAAVAEAKKWFRPELVGRLDELIVFRPLEEQSLCSIAEKLLGQLEERAARSGYQLT 697

Query: 242 TREIADAALLRLAIDKMGFDQL----DLRYLTMIARNFGGGPVGIETISAGLSEPRDAI 296
                  AL   A    G  +L    D       A     G V +             I
Sbjct: 698 HTARVGPALAAKAHSPYGARELRRQVDRAVEQAFADQIASGSVSLGQHWTADCAEDGTI 756


>gi|240256093|ref|NP_194529.4| ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding
           [Arabidopsis thaliana]
 gi|332660018|gb|AEE85418.1| AAA-type ATPase family protein [Arabidopsis thaliana]
          Length = 830

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 49/279 (17%), Positives = 95/279 (34%), Gaps = 42/279 (15%)

Query: 9   SRNVSQEDADISLLRPR---------TLEEFTGQVEACSNLKVFIEAAKARAEALDH--- 56
           +  V+ ++     +RP          T  +     E   +L+  +     R +       
Sbjct: 490 APEVAPDNEFEKRIRPEVIPANEIGVTFADIGSLDETKESLQELVMLPLRRPDLFKGGLL 549

Query: 57  -----VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLED 105
                +L  GPPG GKT +A+ +A E G +F + S   I          ++ AL T    
Sbjct: 550 KPCRGILLFGPPGTGKTMMAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAK 609

Query: 106 --RDVLFIDEIH-----RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIA 158
               ++F+DE+      R  +   E +     +F              +     R  ++A
Sbjct: 610 VSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFM-------THWDGLMSNAGDRILVLA 662

Query: 159 ATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGT 218
           AT R   L   +  RF   I +    +E  + I++    L     T+    +    ++ T
Sbjct: 663 ATNRPFDLDEAIIRRFERRIMVGLPSVESREKILR---TLLSKEKTEN--LDFQELAQMT 717

Query: 219 PRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257
              +G  L+     A     + + ++       R   ++
Sbjct: 718 DGYSGSDLKNFCTTAAYRPVRELIKQECLKDQERRKREE 756


>gi|310600|gb|AAA72002.1| ATPase [Sulfolobus acidocaldarius]
          Length = 780

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 43/189 (22%), Positives = 71/189 (37%), Gaps = 23/189 (12%)

Query: 24  PR-TLEEFTGQVEACSNLKVFIE--------AAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           P+    +  G       L+  +E          K+       +L  GPPG GKT LA+ V
Sbjct: 482 PKVNWNDIGGLDNVKQQLREAVEWPLRFPELFTKSGVTPPKGILLFGPPGTGKTMLAKAV 541

Query: 75  ARELGVNFRSTSGPVI------AKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILY 126
           A E G NF +  GP I           +  +          V+F DEI  ++ I      
Sbjct: 542 ATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPTVIFFDEIDSIAPIR----G 597

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
            + +    + +V +  +     + L++  +IAAT R  +L   L    RF   I +   +
Sbjct: 598 LSTDSGVTERIVNQLLAEMDGIVPLNKVVIIAATNRPDILDPALLRPGRFDRLIYVPPPD 657

Query: 185 IEDLKTIVQ 193
                 I++
Sbjct: 658 KTARFEILK 666



 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 70/192 (36%), Gaps = 15/192 (7%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLED 105
           +    +L  GPPG GKT LA+ +  E+G  F + +GP I           +  +    E+
Sbjct: 244 DPPKGILLYGPPGTGKTLLARALRNEIGAYFITVNGPEIMSKFYGESEQRIREIFKEAEE 303

Query: 106 R--DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
               ++FIDEI  ++   E++     +     L+               R  +I AT R 
Sbjct: 304 NAPSIIFIDEIDAIAPKREDVTGEVEKRVVAQLLT-----LMDGIKGRGRVIVIGATNRP 358

Query: 164 GLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRI 221
             +   L+   RF   I +   + +  K I+Q   +   +    +      M    T   
Sbjct: 359 DAIDPALRRPGRFDREIEIRPPDTKGRKDILQVHTRNMPITDDVDLDKLAEMTYGYTGAD 418

Query: 222 AGRLLRRVRDFA 233
              L +    +A
Sbjct: 419 LAALAKEAAIYA 430


>gi|330939988|gb|EGH43188.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv.
           pisi str. 1704B]
          Length = 127

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 8/106 (7%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPR+  E  GQ      LK  I A    ++ L H  LF G  G+GKTT+A+++A+ L   
Sbjct: 11  RPRSFREMVGQAHV---LKALISA--LDSQRLHHAYLFTGTRGVGKTTIARIIAKCLNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127
              TS P       +   +      D++ ID   R  +     L  
Sbjct: 66  TGITSTP--CGTCSVCKEIDEGRFVDLIEIDAASRTKVEDTRELLD 109


>gi|290976655|ref|XP_002671055.1| predicted protein [Naegleria gruberi]
 gi|284084620|gb|EFC38311.1| predicted protein [Naegleria gruberi]
          Length = 883

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 52/254 (20%), Positives = 85/254 (33%), Gaps = 20/254 (7%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
              +  G      +++  IE      E            +L  GPPG GKT LA  +A E
Sbjct: 223 RFSDIGGIDNILQDIRELIEYPILHPEIYSTLGVEPPRGILLHGPPGCGKTMLANAIAGE 282

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM 129
           L + F   S P I           +  +  +       ++FIDEI  +    +      M
Sbjct: 283 LQIPFLKVSAPEIVSGMSGESEAKIRQIFRDAISNAPSIIFIDEIDAILSKRDNAS-KEM 341

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
           E   +  ++         K       +I AT R   L + L+   RF   I L   + + 
Sbjct: 342 EKRIVAQLITCLDDLTLEKTGGKTVIIIGATNRPDSLDDALRRAGRFDREISLGIPDEKA 401

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
              I+    +   L    +      + +  TP   G  L+ + + A +A    I  +I  
Sbjct: 402 RMKILNILTRKLKLDGGHDTFDFKTI-AHNTPGYVGADLKALVNEAAIAAIHRIFGDIVF 460

Query: 248 AALLRLAIDKMGFD 261
               +   D M  D
Sbjct: 461 GTEQQQGDDPMAVD 474



 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 83/221 (37%), Gaps = 23/221 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
           T ++     E    L++ I       +        A   VL  GPPG GKT LA+ ++ +
Sbjct: 550 TWDDIGALEEVREELRMAIMEPIKNPDHYKKLGLTAPAGVLLYGPPGCGKTLLAKAISND 609

Query: 78  LGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAM 129
            G NF S  GP +     G+    +  +  R       V+F DE+  L    +       
Sbjct: 610 SGANFISIKGPELLNKYVGESERAVRQVFSRAAASSPCVIFFDEMDALCPKRDNESSSQS 669

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            +  ++ ++       S  +      +IAAT R  ++ + +    R    + +     ++
Sbjct: 670 SERVVNQLLTAMDGLESRGM----VFVIAATNRPDMIDSAMLRPGRLDKLLYVKLPNEQE 725

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
             ++++  A+ T LA +D    EIA             L R
Sbjct: 726 RISVLKTIARKTPLA-SDVNLEEIAKLCENFSGADLAALVR 765


>gi|225679937|gb|EEH18221.1| ATP-dependent protease La [Paracoccidioides brasiliensis Pb03]
          Length = 1073

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 71/192 (36%), Gaps = 33/192 (17%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI   K R      +L FVGPPG+GKT++ + +AR L   +   S
Sbjct: 535 EDHYGLKDVKDRILEFIAVGKLRGTVEGKILCFVGPPGVGKTSIGKSIARALNREYYRFS 594

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ ++    +        
Sbjct: 595 VGGLTDVAEIKGHRRTYIGALPGRVIQALKKCQTENPLILIDEVDKIGRGHQGDPSSALL 654

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           + ++LS+   +        +  PL DR  I I L+ 
Sbjct: 655 ELLDPEQNSSFLD-------HYMDISVDLSKVLFVCTANMTDTIPRPLLDRMEI-IELSG 706

Query: 183 YEIEDLKTIVQR 194
           Y  ++   I +R
Sbjct: 707 YVADEKMAIAER 718


>gi|255558698|ref|XP_002520373.1| Cell division protein ftsH, putative [Ricinus communis]
 gi|223540420|gb|EEF41989.1| Cell division protein ftsH, putative [Ricinus communis]
          Length = 701

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 57/274 (20%), Positives = 95/274 (34%), Gaps = 23/274 (8%)

Query: 26  TLEEFTG-----QV--EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G     Q   E    LK         A     VL VGPPG GKT LA+ +A E 
Sbjct: 237 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEA 296

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG           A  +  L    ++    ++F+DEI  +       +    +
Sbjct: 297 GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGND 356

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E               +IAAT R  +L + L    RF   + ++  +I 
Sbjct: 357 EREQTLNQLLTEMDGFEGNTG----IIVIAATNRADILDSALLRPGRFDRQVTVDVPDIR 412

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
               I++  A                     +      LL      A       I+ +  
Sbjct: 413 GRTEILKVHAGNKKFDADVSLDIIAMRTPGFSGADLANLLNEAAILAGRRGKTAISSKEI 472

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV 280
           D ++ R+     G    D +  +++A +  G  +
Sbjct: 473 DDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAI 506


>gi|85859372|ref|YP_461574.1| cell division protein [Syntrophus aciditrophicus SB]
 gi|85722463|gb|ABC77406.1| cell division protein [Syntrophus aciditrophicus SB]
          Length = 611

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 58/245 (23%), Positives = 99/245 (40%), Gaps = 27/245 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAK-------ARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  EA + L+  IE  K               +L VGPPG GKT LA+ +A E 
Sbjct: 151 TFSDVAGIDEAKAELEEVIEFLKDPKKFTRLGGRIPKGLLLVGPPGTGKTLLAKAIAGEA 210

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F + SG       V   A  +  L T  +     ++FIDEI  +       L    +
Sbjct: 211 DVPFLTISGSDFVEMFVGVGASRVRDLFTQAKKNAPCIIFIDEIDAVGRHRGAGLGGGHD 270

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E     S +       L++AT R  +L   L    RF   + +   +++
Sbjct: 271 EREQTLNQLLVEMDGFESNEG----VILVSATNRPDVLDPALLRPGRFDRQVVVPLPDVK 326

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I Q  ++ T L        + ++ +RGTP  +G  +  + + A +  A +   ++ 
Sbjct: 327 GREKIFQVHSRKTILEDD----VDFSLLARGTPGASGADIENLVNEAILHAAGSGKEKVE 382

Query: 247 DAALL 251
            A   
Sbjct: 383 LADFE 387


>gi|75909397|ref|YP_323693.1| FtsH peptidase [Anabaena variabilis ATCC 29413]
 gi|75703122|gb|ABA22798.1| membrane protease FtsH catalytic subunit [Anabaena variabilis ATCC
           29413]
          Length = 628

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 62/274 (22%), Positives = 98/274 (35%), Gaps = 23/274 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
             ++  G  EA   L+  +   K         A     VL VGPPG GKT LA+ +A E 
Sbjct: 171 KFDDVAGIEEAKEELQEVVTFLKQPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEA 230

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG           A  +  L    +D    ++FIDEI  +       +    +
Sbjct: 231 GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKDNAPCIIFIDEIDAVGRQRGAGIGGGND 290

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E               +IAAT R  +L   L    RF   + ++  +I+
Sbjct: 291 EREQTLNQLLTEMDGFEGNTG----IIIIAATNRPDVLDAALLRPGRFDRQVTVDAPDIK 346

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
               ++Q  A+   L  +             T      LL            + IT    
Sbjct: 347 GRLEVLQVHARNKKLDPSVSLEAIARRTPGFTGADLANLLNEAAILTARRRKEGITLSEI 406

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV 280
           D A+ R+     G   +D +   +IA +  G  +
Sbjct: 407 DDAVDRVVAGMEGTPLVDSKSKRLIAYHEVGHAL 440


>gi|302338771|ref|YP_003803977.1| ATP-dependent metalloprotease FtsH [Spirochaeta smaragdinae DSM
           11293]
 gi|301635956|gb|ADK81383.1| ATP-dependent metalloprotease FtsH [Spirochaeta smaragdinae DSM
           11293]
          Length = 646

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 58/263 (22%), Positives = 91/263 (34%), Gaps = 29/263 (11%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVARE 77
            T  +  G  EA   L   ++  K          +    +L VGPPG GKT LA+ VA E
Sbjct: 193 TTFNDVAGVEEAKDELVEVVDFLKNPTKYTAIGGKIPKGILLVGPPGTGKTLLARAVAGE 252

Query: 78  LGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
            GV F   SG       V   A  +  L     ++   ++F+DE+  +       +    
Sbjct: 253 AGVVFFRMSGADFVEMFVGVGAARVRDLFRQAREKAPCIIFVDELDAIGKSRANNIGGND 312

Query: 130 EDFQL---DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
           E  Q     L+  +G  A S  I L      AAT R  LL   L    RF   + ++  +
Sbjct: 313 EREQTLNQLLVEMDGFDATSGVILL------AATNRPELLDPALLRPGRFDRQVLVDRPD 366

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +E  + I+   AK   L  + +     A            ++      A       +T  
Sbjct: 367 LEGREAILNIHAKDVKLDKSVDLKEIAASTPGFVGSDLANIINEAALLAVRGGRNLVTMA 426

Query: 245 IADAALLRLAIDKMGFDQLDLRY 267
               A+ +      G  + +   
Sbjct: 427 DLHEAIEKTVA---GLQKKNRLI 446


>gi|296242922|ref|YP_003650409.1| CDC48 subfamily AAA family ATPase [Thermosphaera aggregans DSM
           11486]
 gi|296095506|gb|ADG91457.1| AAA family ATPase, CDC48 subfamily [Thermosphaera aggregans DSM
           11486]
          Length = 744

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 51/204 (25%), Positives = 78/204 (38%), Gaps = 27/204 (13%)

Query: 11  NVSQEDADISLLR---PR-TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VL 58
            V +E      +R   PR T E+     EA   ++  +E      E  +H        +L
Sbjct: 167 EVREEPVRPEAIREGVPRITWEDIGDLEEAKQKIREIVELPLKNPELFEHLGIEPPKGIL 226

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLF 110
             GPPG GKT LA+ +A E+G  F + +GP I           L  +    E     V+F
Sbjct: 227 LYGPPGTGKTLLAKALANEIGAYFITINGPEIMSKFYGESEERLRKIFEEAEANAPSVIF 286

Query: 111 IDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           IDEI  ++   EE+     +     L+               R  +I AT R   L   L
Sbjct: 287 IDEIDSIAPKREEVTGEVEKRVVAQLLT-----LMDGLKERGRVIVIGATNRPDALDPAL 341

Query: 171 QD--RFGIPIRLNFYEIEDLKTIV 192
           +   RF   I +   + +  + I+
Sbjct: 342 RRPGRFDREIEIPPPDKKARREIL 365



 Score = 53.2 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 60/269 (22%), Positives = 97/269 (36%), Gaps = 30/269 (11%)

Query: 29  EFTGQVEACSNLKVFIE--------AAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           +  G       LK  +E          K   E    +L  GPPG GKT LA+ VA E G 
Sbjct: 463 DIGGLETVKQELKEAVEWPMKYPSVFEKMGIEPPKGILLFGPPGTGKTLLAKAVATESGA 522

Query: 81  NFRSTSGP-VIAK-AGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDF 132
           NF +  GP V++K  G+    +  +  R       V+F DEI  ++         +    
Sbjct: 523 NFITVRGPEVLSKWVGESEKAIRQIFRRAKMVAPSVVFFDEIDSIA-----GARGSDPSG 577

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKT 190
            +D +V +  +       L +  +IAAT R  LL   L    RF   + +   ++     
Sbjct: 578 VIDRIVNQLLTEMDGIQPLRKVVVIAATNRPDLLDPALLRPGRFDRLVYVPPPDLRARVE 637

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSR-GTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
           I +   + T +A  D    E+A R+   T      + R     A         +      
Sbjct: 638 IFKVHTRRTPIA-EDVNIEELARRTEGYTGADIAAVCREAAMMAIRESIGEGDKPSVKKV 696

Query: 250 LLRLAIDKMG-----FDQLDLRYLTMIAR 273
            +R   + +        + D+     +AR
Sbjct: 697 EMRHFAEALKKVPPSLSKEDIEMYERLAR 725


>gi|153854579|ref|ZP_01995849.1| hypothetical protein DORLON_01844 [Dorea longicatena DSM 13814]
 gi|149752888|gb|EDM62819.1| hypothetical protein DORLON_01844 [Dorea longicatena DSM 13814]
          Length = 671

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 70/312 (22%), Positives = 118/312 (37%), Gaps = 34/312 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEA-------LDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ EA  +L+  ++      +            L VGPPG GKT LA+ VA E 
Sbjct: 167 TFKDVAGQDEAKESLQEVVDFLHNPGKYTSVGAKLPKGALLVGPPGTGKTLLAKAVAGEA 226

Query: 79  GVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
            V F S SG            ++  DL      +    ++FIDEI  +    +  +    
Sbjct: 227 KVPFFSLSGSAFVEMYVGVGASRVRDLFKQAQQMAP-CIIFIDEIDAIGKSRDNQMGGND 285

Query: 130 E-DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           E +  L+ ++ E     S K  +    L+AAT R  +L   L  R G   R    E  DL
Sbjct: 286 EREQTLNQLLAEMDGFESNKGLV----LLAATNRPEILDPALL-RPGRFDRRIIVEKPDL 340

Query: 189 KTIVQRGAKLTGLAVTDEAACEIA---MRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           K  V+    +  +   D    E       +  T    G  L  + + A +   K     +
Sbjct: 341 KGRVE----VLKVHSKDVKMDETVNLEEIALATSGAVGSDLANMINEAAINAVKHGRNAV 396

Query: 246 ADAAL-LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE--DLIEP 302
             + L   + +  +G ++ D        R      VG   + + L +  + ++   ++  
Sbjct: 397 CQSDLFEAVEVVLVGKEKKDRIMSQEERRIVSYHEVG-HALVSALQKDAEPVQKITIVPR 455

Query: 303 YMIQQGFIQRTP 314
            M   G++ +TP
Sbjct: 456 TMGALGYVMQTP 467


>gi|16329797|ref|NP_440525.1| cell division protein FtsH [Synechocystis sp. PCC 6803]
 gi|2492511|sp|P73179|FTSH1_SYNY3 RecName: Full=ATP-dependent zinc metalloprotease FtsH 1
 gi|1652282|dbj|BAA17205.1| cell division protein; FtsH [Synechocystis sp. PCC 6803]
          Length = 665

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 63/282 (22%), Positives = 106/282 (37%), Gaps = 24/282 (8%)

Query: 27  LEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVARELG 79
            ++  G  EA   L+  +   K         A+    VL +GPPG GKT LA+ +A E G
Sbjct: 210 FDDVAGIDEAKEELQEVVTFLKQPEKFTAIGAKIPRGVLLIGPPGTGKTLLAKAIAGEAG 269

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMED 131
           V F S SG           A  +  L    ++    ++FIDEI  +            ++
Sbjct: 270 VPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCLVFIDEIDAVGRQRGVGYGGGNDE 329

Query: 132 FQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            +  L  ++ E           S   +IAAT R  +L   L    RF   + +++ +++ 
Sbjct: 330 REQTLNQLLTEMDGFEGN----SGIIVIAATNRPDVLDLALLRPGRFDRQVTVDYPDVQG 385

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            + I+   A+   L    + A         T      +L     F      + IT    +
Sbjct: 386 RELILAIHAQNKKLHEEVQLAAIARRTPGFTGADLANVLNEAAIFTARRRKEAITMAEVN 445

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGL 289
            A+ R+     G   +D +   +IA +  G  + I T+  G 
Sbjct: 446 DAIDRVVAGMEGTPLVDSKSKRLIAYHEVGHAL-IGTLCPGH 486


>gi|159108972|ref|XP_001704753.1| Topoisomerase II [Giardia lamblia ATCC 50803]
 gi|157432825|gb|EDO77079.1| Topoisomerase II [Giardia lamblia ATCC 50803]
          Length = 519

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 52/210 (24%), Positives = 82/210 (39%), Gaps = 23/210 (10%)

Query: 19  ISLLRPR-TLEEFTGQVEACSNLK-------VFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           I  ++P    ++  G  +A   LK       +F +  + + E    +L  G PG GK+ L
Sbjct: 150 IVRMKPDVKWDDVVGLEKAKEALKEAVILPMMFPQLFQGKREPWRGILLYGCPGTGKSFL 209

Query: 71  AQVVARELGVNFRSTSGP--VIAKAGDLAAL------LTNLEDRDVLFIDEIHRLSIIV- 121
           A+ VA E    F S S    V    G+ A L      L   E + V+FIDEI  L+    
Sbjct: 210 AKAVAAECDATFFSVSSSDLVSKYVGESARLIKALFELARAEKQAVIFIDEIDALASARG 269

Query: 122 -EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
             E    + +     L+  +G     V        ++ AT     L + ++ RF   I +
Sbjct: 270 GGEESDASRQIKTEFLVQMQG-----VGKTGGNVLVLGATNYPEALDSAIRRRFEKRIEI 324

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACE 210
              +    K I++ G   T   +TD    E
Sbjct: 325 VLPDAAARKNILRSGIGSTPNVLTDSDFAE 354


>gi|304315644|ref|YP_003850789.1| Vesicle-fusing ATPase [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
 gi|302777146|gb|ADL67705.1| Vesicle-fusing ATPase [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
          Length = 494

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 55/281 (19%), Positives = 100/281 (35%), Gaps = 28/281 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE-------ALDHVLFVGPPGLGKTTLAQVVAREL 78
           + ++  GQ  A S LK  ++    R +        L  +L  GPPG GKT LA+  A+  
Sbjct: 61  SFDDIGGQSTAISELKEALDFVINRDKIKKMGIRPLKGILLSGPPGTGKTLLAKAAAKYT 120

Query: 79  GVNFRSTSGPV------------IAKAGDLAALLTNLEDRD--VLFIDEIHRL-SIIVEE 123
             ++ +TSG              + K  + A  L   E +D  ++FIDEI  L +     
Sbjct: 121 DSSYVATSGSEFIEMYAGVGAQRVRKLFESAKALAKKEQKDSAIIFIDEIDILGAKRGTN 180

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLN 181
             +   +     L+V          IN+    ++AAT R  +L   L    RF   + ++
Sbjct: 181 ESHHEYDQTLNQLLVEMDGIKSDNDINI---LVVAATNRPDMLDPALLRPGRFDRQVTVD 237

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
             +      I++   +   L                +      L       A    ++ I
Sbjct: 238 LPDKSGRLQILKIHTRNKPLDENVNLEAIAEDTFGFSGAHLESLCNEAAILAMRDGSEKI 297

Query: 242 TREIADAALLRLAIDKMGFDQ-LDLRYLTMIARNFGGGPVG 281
            ++    A+ ++ + +    +  +   L +     G   VG
Sbjct: 298 MQKHLQEAVDKVILGEKTDKKPTEEEILRVSIHEAGHAIVG 338


>gi|160892779|ref|ZP_02073569.1| hypothetical protein CLOL250_00310 [Clostridium sp. L2-50]
 gi|156865820|gb|EDO59251.1| hypothetical protein CLOL250_00310 [Clostridium sp. L2-50]
          Length = 1373

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 77/222 (34%), Gaps = 31/222 (13%)

Query: 25   RTLEEFTGQVEACSNLKVFIEAAKARAE-------ALDHVLFVGPPGLGKTTLAQVVARE 77
             T ++  G  +    LK  +       +            L  GPPG GKT LA+ VA E
Sbjct: 849  TTFDDIIG-DDVKGKLKPIVNMLINHEDYCERGINVPKGALLAGPPGTGKTLLARAVAGE 907

Query: 78   LGVN-----------FRSTSGPVIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEI 124
               N           F S  G  +     +  L    +D D  ++FIDEI  + I  E  
Sbjct: 908  FQKNLIDESSDKQIAFISVLGTELRTPELVGELFAEADDYDAAIIFIDEIDSIGIKRE-- 965

Query: 125  LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNF 182
             Y +  +    L+              +   ++AAT     L   L+   RF   I +++
Sbjct: 966  -YSSNPEPMFQLL-----KEMDGFEQRTNIFVMAATNAPESLDEALKRPGRFDRYIEVSY 1019

Query: 183  YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGR 224
               +D K I++   K    A    +  E    ++    IA  
Sbjct: 1020 PTEDDRKEIIELYVKKLAWAKNALSDDENETFNQFLGAIADA 1061


>gi|119476225|ref|ZP_01616576.1| DNA polymerase III subunits gamma and tau [marine gamma
           proteobacterium HTCC2143]
 gi|119450089|gb|EAW31324.1| DNA polymerase III subunits gamma and tau [marine gamma
           proteobacterium HTCC2143]
          Length = 588

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 71/234 (30%), Gaps = 55/234 (23%)

Query: 30  FTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVNFRSTS-- 86
             GQ      LK  I A       L H  LF G  G+GKT++A+++A+ L  +   +S  
Sbjct: 1   MVGQEHV---LKALINA--LDHNRLHHAYLFTGTRGVGKTSIARILAKCLNCDVGVSSEP 55

Query: 87  ----------------------GPVIAKAGDLAALLTN------LEDRDVLFIDEIHRLS 118
                                      K  D   LL N           V  IDE+H LS
Sbjct: 56  CGQCSACLSISEGRFVDLIEVDAASRTKVEDTRELLENVQYAPTAGRFKVYLIDEVHMLS 115

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
                 L   +E+                         + ATT    L   +  R  +  
Sbjct: 116 TNSFNALLKTLEE------------------PPPHVKFLLATTDPQKLPATILSRC-LQF 156

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
            L     E +   +Q   +   +   + A   +   + G+ R A  L  +   F
Sbjct: 157 NLKNMSPERIVVHLQNVLEQEMITYEEPALWLLGRSADGSMRDALSLTDQAISF 210


>gi|332158080|ref|YP_004423359.1| cell division protein CDC48 [Pyrococcus sp. NA2]
 gi|331033543|gb|AEC51355.1| cell division protein CDC48 [Pyrococcus sp. NA2]
          Length = 795

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 45/186 (24%), Positives = 70/186 (37%), Gaps = 23/186 (12%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
           T E+  G  +    ++  IE      E            VL  GPPG GKT LA+ VA E
Sbjct: 180 TYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANE 239

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM 129
               F + +GP I           L  +    E+    ++FIDEI  ++    E     +
Sbjct: 240 ANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSE-----V 294

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                  +V +  +      +  +  +I AT R   L   L+   RF   I +   + + 
Sbjct: 295 TGEVEKRVVAQLLALMDGLKSRGKVIVIGATNRPDALDPALRRPGRFDREIEVGVPDKKG 354

Query: 188 LKTIVQ 193
            K I+Q
Sbjct: 355 RKEILQ 360



 Score = 53.5 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 48/207 (23%), Positives = 75/207 (36%), Gaps = 24/207 (11%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVARELG 79
           ++  G  E    LK  +E      EA           +L  GPPG GKT LA+ VA E  
Sbjct: 516 DDIGGLEEVKQELKEAVEWPLKYPEAFRAYGITPPKGILLYGPPGTGKTLLAKAVATESE 575

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAMED 131
            NF +  GP I          ++  +          V+FIDEI  ++      +     +
Sbjct: 576 ANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRGTDV-----N 630

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
              D ++ +  +        +   +IAAT R  +L   L    RF   I +   +     
Sbjct: 631 RVTDRIINQLLTEMDGIQENTGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDERARF 690

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSR 216
            I +   +   L   D    E+A R+ 
Sbjct: 691 EIFKVHTRNMPL-GEDVDLRELARRTE 716


>gi|328857415|gb|EGG06532.1| LON domain serine protease [Melampsora larici-populina 98AG31]
          Length = 1136

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 81/249 (32%), Gaps = 36/249 (14%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  F+   K R      +L  VGPPG+GKT++ + +AR L   F   S
Sbjct: 586 EDHYGLKDVKDRILEFLAVGKLRGTVEGKILCLVGPPGVGKTSIGKSIARALDRQFFRFS 645

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSI--------IVE 122
              +    ++                        +  ++ IDEI ++           + 
Sbjct: 646 VGGLTDVAEIKGHRRTYVGAMPGKLIQALKKVQTENPLVLIDEIDKVGKGHNGDPASALL 705

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD  +        + ++LSR   +     +  +  PL DR  +     +
Sbjct: 706 EMLDPEQNSSFLDHYI-------DIPVDLSRVLFVCTANNLDTIPAPLLDRMEVMEVSGY 758

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
              E +  I  R               E +        IA  +    R+       + I 
Sbjct: 759 VTDEKI-NIATR---YLAPQAKKSCGLENSDVMIEEEAIASLIKSYCRESGVRKLKQNID 814

Query: 243 REIADAALL 251
           +    AAL 
Sbjct: 815 KVFRKAALK 823


>gi|322497912|emb|CBZ32987.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 877

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 35/117 (29%), Positives = 50/117 (42%), Gaps = 15/117 (12%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQ 72
           + L+P    +  G  EA   L+  I+      E  +        VLF GPPG GKT LA+
Sbjct: 558 TKLQPVRWGDVGGMEEAKRELREMIQLPILHPEVFEKGMKKRTGVLFYGPPGCGKTLLAK 617

Query: 73  VVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIV 121
            VA E+ +NF S  GP +          ++  L     D    ++F DEI  L+   
Sbjct: 618 AVATEMSMNFISVKGPELINQYVGESERNIRLLFQRARDNSPCIVFFDEIDALAPAR 674


>gi|281424313|ref|ZP_06255226.1| ATP-dependent protease La [Prevotella oris F0302]
 gi|281401582|gb|EFB32413.1| ATP-dependent protease La [Prevotella oris F0302]
          Length = 820

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 70/191 (36%), Gaps = 34/191 (17%)

Query: 32  GQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           G  +    +  +I   K R +    +L   GPPG+GKT+L + +A  +   +   S   +
Sbjct: 349 GMEKVKERILEYISVLKLRGDLKSPILCLYGPPGVGKTSLGKSIAEAMNRKYVRMSLGGL 408

Query: 91  AKAGDLA------------ALLTNLED----RDVLFIDEIHRL---------SIIVEEIL 125
               ++              ++ N++       V  +DEI ++         S  + E+L
Sbjct: 409 HDESEIRGHRRTYIGAMPGRIIKNIQKAGSSNPVFILDEIDKVTQNTINGDPSSALLEVL 468

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
            P   +   D  +        V  +LS+   IA    +  +  PL DR  +     +   
Sbjct: 469 DPEQNNAFHDNYL-------DVDYDLSKVLFIATANDLNTIPRPLLDRMEVIEVSGYITE 521

Query: 186 EDLKTIVQRGA 196
           E +  I +R  
Sbjct: 522 EKI-EIAKRHL 531


>gi|313902545|ref|ZP_07835946.1| membrane protease FtsH catalytic subunit [Thermaerobacter
           subterraneus DSM 13965]
 gi|313467231|gb|EFR62744.1| membrane protease FtsH catalytic subunit [Thermaerobacter
           subterraneus DSM 13965]
          Length = 614

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 56/250 (22%), Positives = 88/250 (35%), Gaps = 31/250 (12%)

Query: 26  TLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  E    LK  +          +  A     VL  GPPG GKT +A+ VA E 
Sbjct: 157 TFDDVAGYEEVKEELKEIVDYLKNPRRYIELGARIPKGVLLYGPPGTGKTHMARAVAGEA 216

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAME 130
           GV F   SG       V   A  +  L    +     ++FIDEI  +            +
Sbjct: 217 GVPFYYISGSDFVEMFVGVGASRVRDLFEQAKRNAPAIVFIDEIDAVGRQRGAGYGGGHD 276

Query: 131 DFQLDL------MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNF 182
           + +  L      M G G +   +        ++AAT R  +L   L    RF   I ++ 
Sbjct: 277 EREQTLNQLLVEMDGFGTNEGII--------VMAATNRPDVLDPALLRPGRFDRQIVIDR 328

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            ++   + I++   +   LA   + A         T      L+      A     K I 
Sbjct: 329 PDLVAREAILKVHTRSKPLAPDVDLALLARRTPGFTGADLENLVNEAALLAARRRKKQID 388

Query: 243 REIADAALLR 252
            +  + A+ R
Sbjct: 389 MQDLEDAIDR 398


>gi|297842523|ref|XP_002889143.1| hypothetical protein ARALYDRAFT_476911 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297334984|gb|EFH65402.1| hypothetical protein ARALYDRAFT_476911 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 369

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 78/226 (34%), Gaps = 39/226 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP++L++     +    +       K     L H+L  GPPG GKT+    VAR
Sbjct: 40  PWVEKYRPQSLDDVAAHRDIIDTIDRLTNENK-----LPHLLLYGPPGTGKTSTILAVAR 94

Query: 77  ------------ELGVNFRSTSGPVIAKAGDLAALLT-NLEDRDV--LFIDEIHRLSIIV 121
                       EL  +       V  +  D A+  + +L    V  + +DE   ++   
Sbjct: 95  KLYGPKYRNMILELNASDDRGIDVVRQQIQDFASTQSFSLGKSSVKLVLLDEADAMTKDA 154

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           +  L   +E +                   +RF LI     V  +   LQ R     R  
Sbjct: 155 QFALRRVIEKYTKS----------------TRFALIG--NHVNKIIPALQSRC-TRFRFA 195

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             +   +   ++   +  GL V+D     +   S G  R A  +L+
Sbjct: 196 PLDPLHVSQRLKHVIEAEGLGVSDCGLAALVRLSNGDMRKALNILQ 241


>gi|206901548|ref|YP_002250585.1| cell division protein FtsH [Dictyoglomus thermophilum H-6-12]
 gi|206740651|gb|ACI19709.1| cell division protein FtsH [Dictyoglomus thermophilum H-6-12]
          Length = 607

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 58/253 (22%), Positives = 90/253 (35%), Gaps = 30/253 (11%)

Query: 23  RPR-TLEEFTGQVEACSNLKVFIEAAK-------ARAEALDHVLFVGPPGLGKTTLAQVV 74
           RP+ T  +  G  EA   LK  ++  K         A     +L VGPPG GKT LA+ V
Sbjct: 151 RPKVTFADVAGADEAKQELKEVVDFLKYPQKYRQLGARIPRGILLVGPPGTGKTLLARAV 210

Query: 75  ARELGVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           A E  V F S SG            A+  DL      L    ++FIDE+  +       L
Sbjct: 211 AGEANVPFFSISGSEFVEMFVGVGAARVRDLFTQAKKLSP-SIIFIDELDAVGRHRGAGL 269

Query: 126 YPAMEDFQLD----LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIR 179
               ++ +      L+  +G    +  I L      AAT R  +L   L    RF   + 
Sbjct: 270 GGGHDEREQTLNQLLVEMDGFDENTNVIVL------AATNRPDILDPALLRPGRFDRRVI 323

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           ++  + E  K I++   +   +                       L+      A   + +
Sbjct: 324 VDRPDFEGRKKILEVHLRGKPIGKDVNIDIIAKSTPGFVGADIANLVNEAAILAARKNKR 383

Query: 240 TITREIADAALLR 252
            I  E  + A+ +
Sbjct: 384 EINMEEFEEAIEK 396


>gi|17560432|ref|NP_504197.1| FIdGetin-Like (mammalian developmental AAA ATPase) related family
           member (figl-1) [Caenorhabditis elegans]
 gi|74956689|sp|O16299|FIGL1_CAEEL RecName: Full=Fidgetin-like protein 1; AltName: Full=Fidgetin
           homolog
 gi|2291232|gb|AAB65351.1| Hypothetical protein F32D1.1 [Caenorhabditis elegans]
          Length = 594

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 53/262 (20%), Positives = 89/262 (33%), Gaps = 39/262 (14%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAE-------ALDHVLFVGPPGLGKTTLAQVVARELGV 80
            +  G   A   L+  +     R +           VL  GPPG GKT + + VA +   
Sbjct: 316 ADVAGLEGAKKALREIVVLPFKRPDVFTGIRAPPKGVLLFGPPGTGKTMIGRCVASQCKA 375

Query: 81  NFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAMEDF 132
            F + S   +           + AL +    +   V+FIDEI  L     E  + +    
Sbjct: 376 TFFNISASSLTSKWVGEGEKLVRALFSVARLKLPSVIFIDEIDSLLSSRSESEHESSRRI 435

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           + + +V              R  ++ AT R   L    + RF   + +   E E    IV
Sbjct: 436 KTEFLVQLDG---VNTAPDERLLVLGATNRPQELDEAARRRFQKRLYIALPEPESRTQIV 492

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL-- 250
           Q    L      D               I    L R+R+  +      + +   +AA+  
Sbjct: 493 Q---NLLVGTRHD---------------ITNHNLERIRELTDGYSGADMRQLCTEAAMGP 534

Query: 251 -LRLAIDKMGFDQLDLRYLTMI 271
              +  D    D+ D+R +T++
Sbjct: 535 IRDIGDDIETIDKDDIRAVTVM 556


>gi|226291713|gb|EEH47141.1| ATP-dependent protease La [Paracoccidioides brasiliensis Pb18]
          Length = 1073

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 71/192 (36%), Gaps = 33/192 (17%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI   K R      +L FVGPPG+GKT++ + +AR L   +   S
Sbjct: 535 EDHYGLKDVKDRILEFIAVGKLRGTVEGKILCFVGPPGVGKTSIGKSIARALNREYYRFS 594

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ ++    +        
Sbjct: 595 VGGLTDVAEIKGHRRTYIGALPGRVIQALKKCQTENPLILIDEVDKIGRGHQGDPSSALL 654

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           + ++LS+   +        +  PL DR  I I L+ 
Sbjct: 655 ELLDPEQNSSFLD-------HYMDISVDLSKVLFVCTANMTDTIPRPLLDRMEI-IELSG 706

Query: 183 YEIEDLKTIVQR 194
           Y  ++   I +R
Sbjct: 707 YVADEKMAIAER 718


>gi|225682684|gb|EEH20968.1| cell division protease ftsH [Paracoccidioides brasiliensis Pb03]
          Length = 541

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 57/260 (21%), Positives = 91/260 (35%), Gaps = 27/260 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G  EA   L+  +E             +    VL VGPPG GKT LA+ VA E 
Sbjct: 71  RFSDVHGCDEAKEELQELVEFLTNPERFNSLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 130

Query: 79  GVNFRSTSGPVIA------KAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAME 130
           GV F   SG           A  +  L      +   ++FIDE+  +     E    A  
Sbjct: 131 GVPFFYMSGSEFDEVYVGVGAKRVRELFNQARAKAPAIIFIDELDAIGAKRNER-DAAYV 189

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
              L+ ++ E               +IAAT    LL   L    RF   + +   ++   
Sbjct: 190 KQTLNQLLTELDGFSQSTG----VIIIAATNYPKLLDKALTRPGRFDRRVVVGLPDVRGR 245

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             I++   K   ++       + A+ +RGTP  +G  L  + + A +  +K    ++   
Sbjct: 246 VDILKHHMKNVQISTD----VDTAIIARGTPGFSGADLENLVNQAAIHASKNKQTKVGPM 301

Query: 249 ALLRLAI-DKMGFDQLDLRY 267
                     MG +      
Sbjct: 302 DFDWAKDKIMMGAEARSRVM 321


>gi|254521600|ref|ZP_05133655.1| ATP-dependent zinc-metallo protease [Stenotrophomonas sp. SKA14]
 gi|219719191|gb|EED37716.1| ATP-dependent zinc-metallo protease [Stenotrophomonas sp. SKA14]
          Length = 641

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 53/246 (21%), Positives = 88/246 (35%), Gaps = 23/246 (9%)

Query: 26  TLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  EA   +   +       +  K   +    VL VGPPG GKT LA+ +A E 
Sbjct: 159 TFADVAGCDEAKEEVGELVDFLRDPSKFTKLGGKIPRGVLMVGPPGTGKTLLAKAIAGEA 218

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  +    +     ++FIDEI  +       L    +
Sbjct: 219 KVPFFSISGSDFVEMFVGVGASRVRDMFEQAKKHAPCIIFIDEIDAVGRHRGAGLGGGHD 278

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E       +       +IAAT R  +L   L    RF   + +   +++
Sbjct: 279 EREQTLNQLLVEMDGFEGGEG----VIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVK 334

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++   +   LA   E           +      L      FA   + K +  +  
Sbjct: 335 GREHILKVHMRKLPLADDVEPMVIARGTPGFSGADLANLCNEAALFAARGNEKEVRMDHF 394

Query: 247 DAALLR 252
           D A  +
Sbjct: 395 DRARDK 400


>gi|150389419|ref|YP_001319468.1| ATP-dependent metalloprotease FtsH [Alkaliphilus metalliredigens
           QYMF]
 gi|149949281|gb|ABR47809.1| ATP-dependent metalloprotease FtsH [Alkaliphilus metalliredigens
           QYMF]
          Length = 526

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 62/250 (24%), Positives = 95/250 (38%), Gaps = 32/250 (12%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAA-------KARAEALDHVLFVGPPGLGKTTLAQVVARE 77
            T E+  G  E    L   I+         K  A+    +LF GPPG GKT LA  VA E
Sbjct: 87  TTFEDVAGLDEVKEELAEVIDFINQSEKYKKMGAKIPKGILFHGPPGTGKTLLASAVAGE 146

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM 129
               F S SG           A  +  L    +     V+FIDE+  +       L    
Sbjct: 147 TKSTFFSASGSEFVEKYVGVGAKRIRTLFEKAKKEAPSVIFIDEVDAIGAKR--HLDSNN 204

Query: 130 E-DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           E D  L+ ++ E     + +       +IAAT R+ LL   L    RF   + ++   + 
Sbjct: 205 EKDQTLNQLLVELDGFNTDQT----VVVIAATNRMDLLDEALLRPGRFDRHMYISNPNVR 260

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV----AHAKTIT 242
             + I+    K+           EI   +R T  ++G  L  + + A +      A+ I+
Sbjct: 261 AREEIL----KVHTKNKPLCPKIEIKNLARKTHGMSGAHLANISNEAAIIAVREDAEVIS 316

Query: 243 REIADAALLR 252
            +  D A+ R
Sbjct: 317 LDHFDQAIER 326


>gi|114563577|ref|YP_751090.1| DNA polymerase III, subunits gamma and tau [Shewanella
           frigidimarina NCIMB 400]
 gi|114334870|gb|ABI72252.1| DNA polymerase III, subunits gamma and tau [Shewanella
           frigidimarina NCIMB 400]
          Length = 939

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 56/314 (17%), Positives = 100/314 (31%), Gaps = 70/314 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP   E+  GQ        + +  A ++       LF G  G+GKT+LA++ A+ L    
Sbjct: 11  RPAKFEQMVGQSHVL----MALTNALSQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCET 66

Query: 83  ------------------------RSTSGPVIAKAGDLAALLTNLEDRD------VLFID 112
                                            K  D   LL N++ R       V  ID
Sbjct: 67  GVTATPCGECSSCIEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLID 126

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H LS      L   +E+                         + ATT    L   +  
Sbjct: 127 EVHMLSRSSFNALLKTLEE------------------PPEHVKFLLATTDPHKLPVTVLS 168

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R  +   L     +++   ++       L    +A   +A  + G+ R A  L     D 
Sbjct: 169 RC-LQFNLKSLSQDEISKQLEYVITQEKLPFESQALSLLAKAANGSMRDALSL----TDQ 223

Query: 233 AEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVG--IETISAGLS 290
           A    +  +        L            +D +++  + +      VG  ++T++  L+
Sbjct: 224 AIAFGSGQVMLTQVQTMLG----------SIDEQHVLALLKALCDADVGPLMQTVAKVLA 273

Query: 291 EPRDAIEDLIEPYM 304
              DA E+++   +
Sbjct: 274 FGADA-EEVLRSLL 286


>gi|71083213|ref|YP_265932.1| DNA-directed DNA polymerase subunit gamma/tau [Candidatus
           Pelagibacter ubique HTCC1062]
 gi|71062326|gb|AAZ21329.1| DNA-directed DNA polymerase gamma/tau subunit [Candidatus
           Pelagibacter ubique HTCC1062]
          Length = 557

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 47/238 (19%), Positives = 73/238 (30%), Gaps = 54/238 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+T  +  GQ      +   I+A K         LF G  G+GKTT A++VA+ L  + 
Sbjct: 13  RPQTFNDLIGQDVVAETISNSIKANKVPNAY----LFTGIRGIGKTTTARIVAKSLNCSN 68

Query: 83  RSTS-------------------------GPVIAKAGDLAALLT------NLEDRDVLFI 111
              +                                 D+  L+             +  I
Sbjct: 69  GIDNLCKEELCENCNAISNSNHIDVLEMDAASKTGVDDVRDLIEFSRYGPTTAKYKIFII 128

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         I ATT +  +   + 
Sbjct: 129 DEVHMLSKQAFNALLKTLEE------------------PPEYLKFIFATTEIKKIPITVV 170

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
            R           +E    I ++  +      +D+A   I   S G+ R A  LL R 
Sbjct: 171 SRCQRFDLSRIKSLELFDFI-RKIKEKENGNASDDALKLIVKISEGSVRDALSLLDRA 227


>gi|320582077|gb|EFW96295.1| Putative ATPase of the AAA family [Pichia angusta DL-1]
          Length = 715

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 60/256 (23%), Positives = 92/256 (35%), Gaps = 42/256 (16%)

Query: 3   DREGLLSRN--VSQEDADISLLR---P----RTLEEFT------------GQVEACSNLK 41
           D E L S N     ED  I+ +R   P    + L E              G   A ++LK
Sbjct: 387 DTETLDSDNSIEDDEDKLIASMRGVDPVAARQILNEIVVHGDEVHWDDIAGLDAAKNSLK 446

Query: 42  -----VFIEAAKARA--EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPV----- 89
                 F+         E    +L  GPPG GKT LA+ VA E    F S S        
Sbjct: 447 ETVVYPFLRPDLFSGLREPARGMLLFGPPGTGKTMLARAVATESKSTFFSISASSLTSKY 506

Query: 90  IAKAGDLAALLTNLEDR---DVLFIDEIHRL-----SIIVEEILYPAMEDFQLDLM-VGE 140
           + ++  L   L  L  R    ++F+DEI  L     +    E       +F +    + +
Sbjct: 507 LGESEKLVRALFQLAKRLAPSIIFVDEIDSLLGSRNNEGENESSRRIKNEFLVQWSDLTK 566

Query: 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
             + R    +L R  ++AAT     +    + RF     +   E +  K  +QR      
Sbjct: 567 AAAGRDQGEDLQRVLVLAATNLPWAIDEAARRRFVRRQYIPLPEYDTRKAQLQRLLSHQN 626

Query: 201 LAVTDEAACEIAMRSR 216
             +TD+   E+   + 
Sbjct: 627 HTLTDKNLEELIQLTD 642


>gi|190345884|gb|EDK37849.2| hypothetical protein PGUG_01947 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 768

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 74/225 (32%), Gaps = 24/225 (10%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEA--------AKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           P       G  +  S L+  IE         A+        VL  GPPG GKT L + VA
Sbjct: 232 PTGFSNIGGLDKEISLLRSIIEVPLNNPGLFAEFGIAPPRGVLLHGPPGTGKTMLLRSVA 291

Query: 76  RELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVE-EILY 126
            E+  +  + +GP I           L  + +        ++F+DEI  L+     +   
Sbjct: 292 NEVDAHVLAVNGPSIVSKYLGETENALREIFSEARQYQPSIIFMDEIDSLAPNRNSDDSG 351

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
                    L+        S      R  +I AT R   L   L+   RF   + +   +
Sbjct: 352 ETESRVVATLLTMMDGMGESG-----RVVVIGATNRPNSLDPALRRPGRFDQEVEIGIPD 406

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           +     I+ +             A +I+  +  T    G  L  +
Sbjct: 407 VNARLDILSKQFGKMSKEKCCLEAKDISAVALKTHGYVGADLTAL 451



 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 57/259 (22%), Positives = 87/259 (33%), Gaps = 32/259 (12%)

Query: 20  SLLR------PR-TLEEFTGQVEACSNL----KVFIEA----AKARAEALDHVLFVGPPG 64
           S +R      P+    +  GQ E    L    ++ +EA    A     A   VL  GPPG
Sbjct: 490 SAMREIFLEMPKVYWSDIGGQEELKRKLVEVVQLPLEATSTFANLGVSAPRGVLLYGPPG 549

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DVLFIDEIHR 116
             KT  A+ +A E G+NF +  GP I     G+    +  +  +       ++F DEI  
Sbjct: 550 CSKTLTAKALATESGLNFLAVKGPEIFNKYVGESERTIREIFRKARAASPSIIFFDEIDA 609

Query: 117 LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RF 174
           +S   +     A       L+             L+   ++AAT R   +   L    R 
Sbjct: 610 ISGDRDSASTSAASQVLTTLLNEIDGVEE-----LNGVVIVAATNRPTEIDPALLRPGRL 664

Query: 175 GIPIRLNFYEIEDLKTIVQ-RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR-VRDF 232
              I +   + E    I+Q R AK         A             +A       +   
Sbjct: 665 DRHIYVAPPDFEARLQILQTRTAKFNLPESVSLAEIAELTEGCSGAEVALVSQEAGLAAV 724

Query: 233 AEVAHAKTITREIADAALL 251
            E   A  + +   D AL 
Sbjct: 725 MENKRATRVEKRHFDHALK 743


>gi|167535575|ref|XP_001749461.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163772089|gb|EDQ85746.1| predicted protein [Monosiga brevicollis MX1]
          Length = 801

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 83/223 (37%), Gaps = 20/223 (8%)

Query: 29  EFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVARELGV 80
           +  G  E    L+  ++      E            VLF GPPG GKT LA+ +A E   
Sbjct: 473 DIGGLEEVKQELREMVQYPVEHPEMFLKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA 532

Query: 81  NFRSTSGPVIAKA--GDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAMEDF 132
           NF S  GP +     G+  A + ++ D+       VLF DE+  ++      L  A    
Sbjct: 533 NFISIKGPELLTMWFGESEANVRDVFDKARAAAPCVLFFDELDSIAQSRGSSLGDA--GG 590

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKT 190
             D ++ +  +      +     +I AT R  ++   +    R    I +   + E  ++
Sbjct: 591 ASDRVINQVLTEMDGMNSKKNVFIIGATNRPDIIDPAVLRPGRLDQLIYIPLPDEESRRS 650

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
           I++   + T LA   +     A     +      + +R    A
Sbjct: 651 ILKANLRKTPLADDIDLNVVAANTKGFSGADLTEICQRAVKLA 693



 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 49/264 (18%), Positives = 88/264 (33%), Gaps = 40/264 (15%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARA--------EALDHVLFVGPPGLGKTTLAQVVARELG 79
           ++  G  +  + +K  +E              +    +L  GPPG GKT +A+ VA E G
Sbjct: 199 DDIGGCAKQLAQIKEMVELPLRHPQLFKAIGVKPPRGILLYGPPGTGKTMIARAVANETG 258

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMED 131
             F   +GP I          +L       E     ++FIDEI  ++   E+        
Sbjct: 259 AFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAIIFIDEIDAIAPKREK-----TNG 313

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
                +V +  +        +   ++ AT R   +   L+   RF   + +   +     
Sbjct: 314 EVERRIVSQLLTLMDGLKQRAHVIVMGATNRPNSIDPALRRFGRFDRELDIGIPDATGRL 373

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV-RDFAEVAHAKTITREIADA 248
            I++   K   LA                 +IA      V  D A +      +      
Sbjct: 374 EILRIHTKNMKLADD-----------VDLEKIANETHGYVGADLAAL-----CSEAALQQ 417

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIA 272
              R+ +  +  D +D   L ++A
Sbjct: 418 IRERMDLIDLEEDNIDAEVLDLLA 441


>gi|119482299|ref|XP_001261178.1| cell division control protein Cdc48 [Neosartorya fischeri NRRL 181]
 gi|119409332|gb|EAW19281.1| cell division control protein Cdc48 [Neosartorya fischeri NRRL 181]
          Length = 819

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 48/258 (18%), Positives = 86/258 (33%), Gaps = 17/258 (6%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLED 105
           +    +L  GPPG GKT +A+ VA E G  F   +GP I          +L       E 
Sbjct: 254 KPPRGILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEK 313

Query: 106 RD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
               ++FIDEI  ++   E+             +V +  +        S   ++AAT R 
Sbjct: 314 NSPAIIFIDEIDSIAPKREK-----TNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRP 368

Query: 164 GLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRI 221
             +   L+   RF   + +   +      I+    K   LA   +     A         
Sbjct: 369 NSIDPALRRFGRFDREVDIGIPDPTGRLEILSIHTKNMKLAEDVDLETIAAETHGYVGSD 428

Query: 222 AGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVG 281
              L        +    K    ++ +  +    +D +G    + RY   ++       V 
Sbjct: 429 LASLCSEAAM--QQIREKMDLIDLDEDTIDAEVLDSLGVTMENFRYALGVSNPSALREVA 486

Query: 282 IETISAGLSEPRDAIEDL 299
           +  +     E    +E++
Sbjct: 487 VVEVPNVRWEDIGGLEEV 504



 Score = 52.0 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 45/218 (20%), Positives = 83/218 (38%), Gaps = 14/218 (6%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--V 108
           VLF GPPG GKT LA+ VA E   NF S  GP +          ++  +          V
Sbjct: 533 VLFYGPPGTGKTMLAKAVANECAANFISVKGPELLSMWFGESESNIRDIFDKARAAAPCV 592

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +F+DE+  ++      +  A      D +V +  +      +     +I AT R   L  
Sbjct: 593 VFLDELDSIAKSRGGSVGDA--GGASDRVVNQLLTEMDGMTSKKNVFVIGATNRPEQLDA 650

Query: 169 PLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
            L    R    + +   +    ++I++   + T +A   +     +     +    G + 
Sbjct: 651 ALVRPGRLDTLVYVPLPDQASRESILKAQLRKTPVAPDVDIPFIASKTHGFSGADLGFVT 710

Query: 227 RRVRDFA--EVAHAKTITREIADAALLRLAIDKMGFDQ 262
           +R    A  E   A    ++  +AA   + ++  G ++
Sbjct: 711 QRAVKLAIKESIAADIERQKQREAAGEDVKMEDEGEEE 748


>gi|6320077|ref|NP_010157.1| Cdc48p [Saccharomyces cerevisiae S288c]
 gi|1705679|sp|P25694|CDC48_YEAST RecName: Full=Cell division control protein 48
 gi|1431189|emb|CAA98694.1| CDC48 [Saccharomyces cerevisiae]
 gi|1449400|emb|CAA40276.1| CDC48p [Saccharomyces cerevisiae]
 gi|285810910|tpg|DAA11734.1| TPA: Cdc48p [Saccharomyces cerevisiae S288c]
          Length = 835

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 52/257 (20%), Positives = 87/257 (33%), Gaps = 23/257 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
           T ++  G  E    LK  +E      +            VLF GPPG GKT LA+ VA E
Sbjct: 485 TWDDVGGLDEIKEELKETVEYPVLHPDQYTKFGLSPSKGVLFYGPPGTGKTLLAKAVATE 544

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAM 129
           +  NF S  GP +          ++  +          V+F+DE+  ++      L  A 
Sbjct: 545 VSANFISVKGPELLSMWYGESESNIRDIFDKARAAAPTVVFLDELDSIAKARGGSLGDA- 603

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                D +V +  +            +I AT R   +   +    R    I +   +   
Sbjct: 604 -GGASDRVVNQLLTEMDGMNAKKNVFVIGATNRPDQIDPAILRPGRLDQLIYVPLPDENA 662

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
             +I+    + T L   +      A+           LL  V+  A+ A   +I      
Sbjct: 663 RLSILNAQLRKTPL---EPGLELTAIAKATQGFSGADLLYIVQRAAKYAIKDSIEAHRQH 719

Query: 248 AALLRLAIDKMGFDQLD 264
            A   + ++    +  D
Sbjct: 720 EAEKEVKVEGEDVEMTD 736



 Score = 50.5 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 35/132 (26%), Positives = 53/132 (40%), Gaps = 14/132 (10%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLED 105
           +    VL  GPPG GKT +A+ VA E G  F   +GP +          +L       E 
Sbjct: 246 KPPRGVLMYGPPGTGKTLMARAVANETGAFFFLINGPEVMSKMAGESESNLRKAFEEAEK 305

Query: 106 R--DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
               ++FIDEI  ++   ++             +V +  +        S   +IAAT R 
Sbjct: 306 NAPAIIFIDEIDSIAPKRDK-----TNGEVERRVVSQLLTLMDGMKARSNVVVIAATNRP 360

Query: 164 GLLTNPLQDRFG 175
             +   L+ RFG
Sbjct: 361 NSIDPALR-RFG 371


>gi|317503387|ref|ZP_07961431.1| ATP-dependent protease LonB [Prevotella salivae DSM 15606]
 gi|315665482|gb|EFV05105.1| ATP-dependent protease LonB [Prevotella salivae DSM 15606]
          Length = 820

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 70/191 (36%), Gaps = 34/191 (17%)

Query: 32  GQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           G  +    +  +I   K R +    +L   GPPG+GKT+L + +A  +   +   S   +
Sbjct: 349 GMEKVKERILEYISVLKLRGDLKSPILCLYGPPGVGKTSLGKSIAEAMNRKYVRMSLGGL 408

Query: 91  AKAGDLA------------ALLTNLED----RDVLFIDEIHRL---------SIIVEEIL 125
               ++              ++ N++       V  +DEI ++         S  + E+L
Sbjct: 409 HDESEIRGHRRTYIGAMPGRIIKNIQKAGSSNPVFILDEIDKVTQNTINGDPSSALLEVL 468

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
            P   +   D  +        V  +LS+   IA    +  +  PL DR  +     +   
Sbjct: 469 DPEQNNAFHDNYL-------DVDYDLSKVLFIATANDLNTIPRPLLDRMEVIEVSGYITE 521

Query: 186 EDLKTIVQRGA 196
           E +  I +R  
Sbjct: 522 EKI-EIAKRHL 531


>gi|312079317|ref|XP_003142122.1| ATPase [Loa loa]
 gi|307762714|gb|EFO21948.1| ATPase [Loa loa]
          Length = 657

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 85/224 (37%), Gaps = 19/224 (8%)

Query: 24  PR-TLEEFTGQVEACSNL--KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           P+ T ++  G  +    +   + +     +      VL  GPPG GKT +A+ +A +  +
Sbjct: 405 PKVTWDDVGGLDDVKQVVMESLVLNLQGKKNMKRSGVLLYGPPGCGKTLIAKAIANQFKI 464

Query: 81  NFRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAMEDF 132
            F S  GP +     G   A +  + ++       VLF DE+  L+              
Sbjct: 465 TFLSVKGPELLNKYVGQSEANVRKVFEKARMAEPCVLFFDELDSLASKRGRC---GDSSR 521

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKT 190
            +D +V +  +A    +  S+  ++ AT R+ LL   L    RF   I ++       + 
Sbjct: 522 VVDNIVSQ-LAAELDCLEDSKVFVLGATNRLDLLDPSLLRPGRFDKIIEVSGTTNAVTRE 580

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
            + R A        D    EIA  S      +G  L  V   A+
Sbjct: 581 RILRAASRNITFADDVDLKEIAESSGHL--SSGADLHAVISHAQ 622


>gi|294495737|ref|YP_003542230.1| ATPase AAA [Methanohalophilus mahii DSM 5219]
 gi|292666736|gb|ADE36585.1| AAA family ATPase, CDC48 subfamily [Methanohalophilus mahii DSM
           5219]
          Length = 761

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 64/286 (22%), Positives = 106/286 (37%), Gaps = 39/286 (13%)

Query: 4   REGLLSRNVSQEDADISL-------LR------PR-TLEEFTGQVEACSNLKVFIE---- 45
           RE +    V++ED + +L       +R      P  T E+  G  E  S LK  +E    
Sbjct: 448 REIIDKLQVTREDFNEALKTVQPSAMREILIEVPNVTWEDVGGLEEVKSLLKEAVEWPLK 507

Query: 46  ----AAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGD 95
                 +   +A   VL  GPPG GKT LA+ +A E  VNF S  G  +           
Sbjct: 508 YPDSFRRIGVDAPKGVLLYGPPGTGKTMLAKAIAHESNVNFISAKGSDLLSKWYGESEKR 567

Query: 96  LAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAMEDFQLD-LMVGEGPSARSVKINLS 152
           +A +          ++F+DE+  L+ +       A  + Q+   +V +  S       L 
Sbjct: 568 IAEVFVRARQVAPSIVFLDELDALAPLR----GAAAGEPQVTERIVNQLLSEMDGLEELR 623

Query: 153 RFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACE 210
              +I AT R  ++   L    RF   I +   + +    I+Q   +   LA   + +  
Sbjct: 624 GVVVIGATNRPDIIDPALLRPGRFDELIMVPVPDSQTRNKILQVHTRNMMLAGDVDFSEL 683

Query: 211 IAMRSRGTPRIAGRLLRRVRDFA--EVAHAKTITREIADAALLRLA 254
           +      T      + ++   FA  E  +A  +  +    AL    
Sbjct: 684 VKQTDSFTGADIAAVCKKAGRFALREDINASKVQMQHFQKALEETG 729



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 52/204 (25%), Positives = 74/204 (36%), Gaps = 24/204 (11%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALD--------HVLFVGPPGLGKTTLAQVVARELG 79
           E+  G   A   ++  IE      E  D         VL  GPPG GKT LA+ VA E  
Sbjct: 213 EDLGGIKPAIGKIREMIELPLKHPELFDRLGIDAPKGVLLQGPPGTGKTMLARAVANESD 272

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAMED 131
             F S +GP I           L  L  + E     ++F+DEI  ++    E     +  
Sbjct: 273 AYFISINGPEIMSKFYGESEQHLRQLFEDAEANAPSIIFLDEIDSIAPKRAE-----VTG 327

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
                +V +  S            +I AT R G L   L+   RF   I L   + +   
Sbjct: 328 EVERRVVSQLLSLMDGLKERKNVIVIGATNRPGALDMALRRPGRFDREIELRVPDTDGRL 387

Query: 190 TIVQRGAKLTGLAVTDEAACEIAM 213
            I+Q   +   +   D    E+A 
Sbjct: 388 EILQIHTRGMPVT-EDVNLEELAD 410


>gi|226324326|ref|ZP_03799844.1| hypothetical protein COPCOM_02107 [Coprococcus comes ATCC 27758]
 gi|225206774|gb|EEG89128.1| hypothetical protein COPCOM_02107 [Coprococcus comes ATCC 27758]
          Length = 715

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 68/310 (21%), Positives = 114/310 (36%), Gaps = 30/310 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEA-------LDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ EA  +L+  ++      +            L VGPPG GKT LA+ VA E 
Sbjct: 217 TFKDVAGQDEAKESLQEVVDFLHNPGKYTGIGAKLPKGALLVGPPGTGKTLLAKAVAGEA 276

Query: 79  GVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
            V F S SG            ++  DL      +    ++FIDEI  +    +  L    
Sbjct: 277 KVPFFSLSGSAFVEMYVGVGASRVRDLFKQAQQMAP-CIIFIDEIDAIGKSRDSQLGGND 335

Query: 130 E-DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           E +  L+ ++ E     S K  L    L+AAT R  +L   L    RF   I ++  +++
Sbjct: 336 EREQTLNQLLAEMDGFDSNKGLL----LLAATNRPEILDPALLRPGRFDRRIIVDKPDLK 391

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
               +++  AK   +  T          S         ++      A       +++   
Sbjct: 392 GRIDVLKVHAKDVKMDETVNLEEIALATSGAVGSDLANMINEAAINAVKKGRNVVSQADL 451

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVG--IETISAGLSEPRDAIEDLIEPYM 304
             A+  + +   G ++ D        R      VG  + T     +EP   I  +    M
Sbjct: 452 FEAVEVVLV---GKEKKDRIMSQKERRIVSYHEVGHALVTALQKDAEPVQKITIVPRT-M 507

Query: 305 IQQGFIQRTP 314
              G++ +TP
Sbjct: 508 GALGYVMQTP 517


>gi|183222800|ref|YP_001840796.1| DNA polymerase III subunit gamma [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|167781222|gb|ABZ99520.1| DNA polymerase III gamma subunit [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 497

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 44/254 (17%), Positives = 89/254 (35%), Gaps = 23/254 (9%)

Query: 8   LSRNVSQEDADI--SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           ++ +   E+  +     RP+   +   Q  A  +L+   ++ K         +F+GP G+
Sbjct: 1   MNTDQMSENHQVLFRKYRPQFFRDVIYQDLAVGSLQNAFKSKKIGHAY----IFIGPRGV 56

Query: 66  GKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSII 120
           GKTT+A+++A+ L         P       L   +T     DV  ID      +  +  +
Sbjct: 57  GKTTIARILAKRLNCERPDGVEPCNECTSCLE--ITKGNSNDVFEIDAASNSGVDNIREL 114

Query: 121 VEEILYPAMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
            E + + AM       ++ E             ++++   +    I ATT    +   + 
Sbjct: 115 RENVKFNAMGGKYRVYILDEVHMLSGAAFNALLKTLEEPPAHVVFILATTEYHKIPETIL 174

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R           +  L+  ++      GL    E    IA +  G+ R     + +   
Sbjct: 175 SRCQ-DFHFRKVPVTVLQNYIETLCTKEGLKYDSEGLFWIAKKGDGSVRDTLSFMEQAVI 233

Query: 232 FAEVAHAKTITREI 245
           F +        R++
Sbjct: 234 FTDGNLTGVKLRKM 247


>gi|156551619|ref|XP_001600109.1| PREDICTED: similar to AT01057p [Nasonia vitripennis]
          Length = 751

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 45/209 (21%), Positives = 78/209 (37%), Gaps = 20/209 (9%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-------LFVGPPGLGKTTLAQVVAR 76
           P   ++  GQ  A   L+  +     R E    +       L  GPPG GKT LA+ VA 
Sbjct: 473 PVLWDDIAGQETAKQALQEMVILPSLRPELFTGLRTPARGLLLFGPPGNGKTLLARAVAT 532

Query: 77  ELGVNFRSTSGPVIAK---------AGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127
           +    F S S   +              L A+   L+   V+FIDE+  L    ++  + 
Sbjct: 533 QCNATFFSISAASLTSKYVGDGEKLVRALFAIARELQP-SVIFIDEVDSLLSERKDNEHE 591

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
           A    + + +V              R  ++AAT R   L      RF   + +   + + 
Sbjct: 592 ASRRLKTEFLVEFDG---LPCSPEERILVMAATNRPQELDEAALRRFSKRVYVTLPDYQT 648

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSR 216
              +++R        +T+E   +++M + 
Sbjct: 649 RIILLKRLLAKHNDPLTEEELNQMSMLTE 677


>gi|154288250|ref|XP_001544920.1| ribosome biogenesis ATPase RIX7 [Ajellomyces capsulatus NAm1]
 gi|150408561|gb|EDN04102.1| ribosome biogenesis ATPase RIX7 [Ajellomyces capsulatus NAm1]
          Length = 712

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 59/244 (24%), Positives = 92/244 (37%), Gaps = 20/244 (8%)

Query: 47  AKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLE 104
           A+    A   VL  GPPG GKT LA+ VA E   NF S  GP +     G+    +  + 
Sbjct: 478 ARVGITAPTGVLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESERAVRQVF 537

Query: 105 DRD------VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIA 158
            R       V+F DE+  L    ++ L  A       L+        + +       +IA
Sbjct: 538 VRARSSVPCVIFFDELDALVPRRDDTLSEASARVVNTLLTELDGLGSARQG----IYVIA 593

Query: 159 ATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSR 216
           AT R  ++   +    R    + +N    ++   I+Q   +   +  +D           
Sbjct: 594 ATNRPDIIDPAMLRPGRLETLLFVNLPSADERVEILQTLLRKLPIEFSDNIEGLARSCEG 653

Query: 217 GTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFG 276
            +    G LLRR   ++ +    TI  E   AA   +          DLR    + R++G
Sbjct: 654 FSGADLGSLLRRA-GYSAIKRRDTIRFEDFVAAKAGIRP-----SVSDLRKYEKLRRDWG 707

Query: 277 GGPV 280
           GG V
Sbjct: 708 GGSV 711



 Score = 47.4 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/162 (23%), Positives = 58/162 (35%), Gaps = 17/162 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
            L +  G  +    L+  +     R +            VL  GPPG GKT +A   A E
Sbjct: 175 NLADLGGVDDIIQELEDLLVLPMTRPQVYSSSKVQPPRGVLLHGPPGCGKTMIANAFAAE 234

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
           LGV F + S P I           +       +     ++FIDEI  ++    E     M
Sbjct: 235 LGVPFIAISAPSIVSGMSGESEKAIREHFDEAKKVAPCLIFIDEIDAITPKR-ESAQREM 293

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           E   +  ++         K +     ++AAT R   L   L+
Sbjct: 294 EKRIVAQLLTCMDDLALEKTDGKPVIVLAATNRPDSLDAALR 335


>gi|114568986|ref|YP_755666.1| DNA polymerase III subunits gamma and tau [Maricaulis maris MCS10]
 gi|114339448|gb|ABI64728.1| DNA polymerase III, tau subunit [Maricaulis maris MCS10]
          Length = 606

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 59/304 (19%), Positives = 101/304 (33%), Gaps = 35/304 (11%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP T E+  GQ      L     A +         +  G  G+GKTT A+++AR L
Sbjct: 36  ARKYRPDTFEDLIGQDAMVRTLTNAFAAGRIAHAY----MLTGVRGVGKTTTARLIARAL 91

Query: 79  GVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFIDEIHRLSI-----IVEEILYPAMED 131
                    P   + + G     +      DV+ +D   R  +     I+E + Y  +  
Sbjct: 92  NFQTDGIDAPSMALGEKGRHCDAIGRSAHVDVMEMDAASRTGVGDIREILEGVRYAPVSA 151

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT +  +   +  R      L  
Sbjct: 152 RYKVYIIDEVHMLSTSAFNALLKTLEEPPEHAKFIFATTEIRKVPVTVLSRCQ-RFDLKR 210

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            + E L   + R   L G +V  +    IA  + G+ R A  LL    D A V  +    
Sbjct: 211 IDREVLTDHLDRICGLEGASVERDGLSLIARAAEGSVRDALSLL----DQAIVQGSDEDG 266

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGG----PVGIETISAGLSEPRDAIED 298
              A         D +G      R L ++ +   G        + ++     +P     D
Sbjct: 267 PVSAPQ-----IRDMLGLAD-HARVLDLLEQTLTGKTADALAELSSLHDAGGDPVVITRD 320

Query: 299 LIEP 302
           L++ 
Sbjct: 321 LLDY 324


>gi|329768246|ref|ZP_08259747.1| hypothetical protein HMPREF0428_01444 [Gemella haemolysans M341]
 gi|328837445|gb|EGF87074.1| hypothetical protein HMPREF0428_01444 [Gemella haemolysans M341]
          Length = 668

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 60/244 (24%), Positives = 91/244 (37%), Gaps = 19/244 (7%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKAR-------AEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  E    L   +E  K         A     VL  GPPG GKT LA+ VA E 
Sbjct: 166 TFKDVAGADEEKQELAEMVEFLKDHRKFTKMGARIPKGVLLEGPPGTGKTLLARAVAGEA 225

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  L    E     ++FIDEI  +       +    +
Sbjct: 226 KVPFFSISGSDFVEMFVGVGASRVRDLFKEAEKNAPCIIFIDEIDAVGRKRGSGVGGGND 285

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
           + +  L   +               +IAAT R  +L N L+   RF   I+++  +++  
Sbjct: 286 EREQTL--NQLLVEMDGFDGEKGIIVIAATNRADVLDNALRRPGRFDRQIKVSTPDVKGR 343

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           + I++  AK   LA   E           +      +L      A   +  +I +E  D 
Sbjct: 344 EAILKVHAKNKPLAKGVELRSLAEKTPGFSGADLANILNEAALLAARENKSSIDKEDLDE 403

Query: 249 ALLR 252
           A+ R
Sbjct: 404 AMDR 407


>gi|242042265|ref|XP_002468527.1| hypothetical protein SORBIDRAFT_01g047410 [Sorghum bicolor]
 gi|241922381|gb|EER95525.1| hypothetical protein SORBIDRAFT_01g047410 [Sorghum bicolor]
          Length = 780

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 39/167 (23%), Positives = 63/167 (37%), Gaps = 28/167 (16%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHV--------LFVGPPGLGKTTLAQVVARELG 79
           ++  G  +  + ++  +E      +    +        L  GPPG GKT +A+ VA E G
Sbjct: 186 DDVGGMRKQLAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG 245

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPA--- 128
             F   +GP I          +L       E     ++FIDEI  ++   E+        
Sbjct: 246 AFFFCINGPEIMSKLAGESESNLRKAFQEAEKNAPSIIFIDEIDSIAPKREKTHGEVERR 305

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
           +    L LM G    A  +        ++ AT R   +   L+ RFG
Sbjct: 306 IVSQLLTLMDGLKTRAHVI--------VMGATNRPNSIDPALR-RFG 343



 Score = 50.5 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 71/203 (34%), Gaps = 13/203 (6%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +          ++  +          V
Sbjct: 496 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARQSAPCV 555

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           LF DE+  +++     +  A      D ++ +  +            +I AT R  ++  
Sbjct: 556 LFFDELDSIAMQRGSHVGDA--GGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDP 613

Query: 169 PLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
            L    R    I +   +    + I +   + + +A   +        +  +      + 
Sbjct: 614 ALLRPGRLDQLIYIPLPDEASRQQIFKACLRKSPVAKNVDLGALARFTAGFSGADITEIC 673

Query: 227 RRVRDFAEVAHAKTITREIADAA 249
           +R   +A +        E    A
Sbjct: 674 QRACKYA-IREDIEKDIERERKA 695


>gi|322382239|ref|ZP_08056152.1| DNA polymerase III subunits gamma and tau-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
 gi|321153820|gb|EFX46188.1| DNA polymerase III subunits gamma and tau-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
          Length = 559

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 79/220 (35%), Gaps = 27/220 (12%)

Query: 32  GQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           GQ      L+  +     R +   H  LF GP G GKT+ A++ A+ +        GP  
Sbjct: 2   GQKHITQTLQNSL-----REQRFTHAYLFSGPRGTGKTSTAKIFAKAVNCMH----GPAE 52

Query: 91  AKAGDLAALLTNLED--RDVLFID-----EIHRLSIIVEEILYPAMEDFQLDLMVGE--- 140
               + +A +   +    DV+ ID      +  +  I +++ Y   E      ++ E   
Sbjct: 53  EPCNECSACIRITQGAVMDVIEIDAASNRGVEEIRDIRDKVKYAPTEVRYKVYIIDEVHM 112

Query: 141 ------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
                     ++++        I ATT    L   +  R           +E+    ++ 
Sbjct: 113 LTTEAFNALLKTLEEPPEHVIFILATTEPHKLPATIISRCQ-RFDFRRISLEEQVQRLRF 171

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
             K  G+ V DEA   I   S G  R A  +L +   +A 
Sbjct: 172 VCKQEGIHVEDEALHYIGRLSDGGMRDALSILDQASSYAA 211


>gi|189912832|ref|YP_001964387.1| DNA polymerase III subunit gamma and tau [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167777508|gb|ABZ95809.1| DNA polymerase III, gamma and tau subunits [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
          Length = 492

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 43/240 (17%), Positives = 83/240 (34%), Gaps = 21/240 (8%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
              RP+   +   Q  A  +L+   ++ K         +F+GP G+GKTT+A+++A+ L 
Sbjct: 10  RKYRPQFFRDVIYQDLAVGSLQNAFKSKKIGHAY----IFIGPRGVGKTTIARILAKRLN 65

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMEDFQL 134
                   P       L   +T     DV  ID      +  +  + E + + AM     
Sbjct: 66  CERPDGVEPCNECTSCLE--ITKGNSNDVFEIDAASNSGVDNIRELRENVKFNAMGGKYR 123

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             ++ E             ++++   +    I ATT    +   +  R           +
Sbjct: 124 VYILDEVHMLSGAAFNALLKTLEEPPAHVVFILATTEYHKIPETILSRCQ-DFHFRKVPV 182

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
             L+  ++      GL    E    IA +  G+ R     + +   F +        R++
Sbjct: 183 TVLQNYIETLCTKEGLKYDSEGLFWIAKKGDGSVRDTLSFMEQAVIFTDGNLTGVKLRKM 242


>gi|146183034|ref|XP_001025694.2| ATPase, AAA family protein [Tetrahymena thermophila]
 gi|146143656|gb|EAS05449.2| ATPase, AAA family protein [Tetrahymena thermophila SB210]
          Length = 412

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 65/265 (24%), Positives = 105/265 (39%), Gaps = 38/265 (14%)

Query: 22  LRPR-TLEEFTGQVEACSNLKVFI---------EAAKARAEALDHVLFVGPPGLGKTTLA 71
           +R +   ++  G   A S L+  I         +A  AR      VL  GPPG GKT LA
Sbjct: 150 MRVKVKFDQIYGLNHAKSQLQEIIDFLKHPSKYQAVGARLRK--GVLIYGPPGTGKTMLA 207

Query: 72  QVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIH-----RLS 118
           +  A E   NF  T+            A  +  L +        ++FIDEI      R +
Sbjct: 208 KATAGESNANFIFTTASEFVEMYVGVGAKRVRDLFSKARKFAPCIIFIDEIDGVGSRRKN 267

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGI 176
              E+          L+ ++ E    + ++       +IAAT R+ L+ + L    RF  
Sbjct: 268 KESEQQGAEMERATTLNQLLTEMDGFQQME----NIVVIAATNRLQLIDDALLRSGRFDT 323

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV- 235
            I++N  + E+ K I+Q   +     V+DE   +IA +S G   ++G  L  V + +   
Sbjct: 324 KIKVNLPDEEERKGILQVHLRNKKQKVSDETLQDIASKSEG---LSGADLENVTNESAYN 380

Query: 236 ---AHAKTITREIADAALLRLAIDK 257
                   I  E    A  ++  +K
Sbjct: 381 CIHKERDMINDEDILEAFDKIYKEK 405


>gi|256397526|ref|YP_003119090.1| ATP-dependent metalloprotease FtsH [Catenulispora acidiphila DSM
           44928]
 gi|256363752|gb|ACU77249.1| ATP-dependent metalloprotease FtsH [Catenulispora acidiphila DSM
           44928]
          Length = 672

 Score = 56.6 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 65/249 (26%), Positives = 91/249 (36%), Gaps = 27/249 (10%)

Query: 25  RTLEEFTGQVEACSNL---KVFIEAAKA----RAEALDHVLFVGPPGLGKTTLAQVVARE 77
            T  +  G  EA   L   K F+EA        A+    VL  GPPG GKT LA+ VA E
Sbjct: 173 TTFADVAGADEAVEELQEVKEFLEAPAKFQAIGAKIPKGVLLYGPPGTGKTLLARAVAGE 232

Query: 78  LGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM 129
            GV F S SG       V   A  +  L    +     ++F+DEI  +       L    
Sbjct: 233 AGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKANAPAIVFVDEIDAVGRHRGAGLGGGH 292

Query: 130 EDFQLD----LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183
           ++ +      L+  +G   +   I       IAAT R  +L   L    RF   I +   
Sbjct: 293 DEREQTLNQLLVEMDGFDVKGGVIL------IAATNRPDILDPALLRPGRFDRQIAVEAP 346

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           ++E  K I+   +K   LA   + +         T      +L            K I  
Sbjct: 347 DLEGRKQILAVHSKGKPLAQGVDLSSLAKRTPGFTGADLANVLNEAALLTARGDKKLIDN 406

Query: 244 EIADAALLR 252
           E  D A+ R
Sbjct: 407 EALDEAVDR 415


>gi|222625938|gb|EEE60070.1| hypothetical protein OsJ_12890 [Oryza sativa Japonica Group]
          Length = 1050

 Score = 56.6 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 83/222 (37%), Gaps = 16/222 (7%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFR 83
           P+T ++  GQ      L     A   R   L +V F GP G GKT+ A+V A+ L  +  
Sbjct: 358 PKTFKDVVGQSLVVQALS---NAVLRRKIGLVYV-FYGPHGTGKTSCARVFAKALNCHSP 413

Query: 84  STSGP----VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
               P        A +L    + +E   V  ID    + ++   +L PA   +++ +   
Sbjct: 414 EHPRPCDSCTSCIAHNLGKSRSVMEIGPVGNIDMDGIVDVLDNVMLSPAPSHYRVFIFDD 473

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-------RFGIPIRLNFYEIEDLKTIV 192
                      +S+    A    V +L +P  D       R          E + + T +
Sbjct: 474 CDTLPADTWSLISKVVDRAPRRVVFILVSPNLDLPHIILSRCQKFFFPKLKECDIVNT-L 532

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
           Q  +    L V  +A   IA RS G+ R A   L ++    +
Sbjct: 533 QWISTSESLDVDRDALKLIASRSDGSLRDAEMTLDQLSLLGQ 574


>gi|90419786|ref|ZP_01227695.1| DNA polymerase III, subunits gamma/tau [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90335827|gb|EAS49575.1| DNA polymerase III, subunits gamma/tau [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 639

 Score = 56.6 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 48/255 (18%), Positives = 86/255 (33%), Gaps = 25/255 (9%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
            +         RPR+ ++  GQ      L    E  +         +  G  G+GKTT A
Sbjct: 17  AAPYRVLARKYRPRSFDDLIGQEPMVRTLTNAFETGRIAQAW----MLTGVRGVGKTTTA 72

Query: 72  QVVARELGVNFRSTSGPVI--AKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEI 124
           +++AR L         P I   + G     +      DV+ +D      I  +  I+ ++
Sbjct: 73  RILARALNYQTDEIDQPTIHMGEPGIHCQAIMEGRHVDVVEMDAASHTGIDDVREIIAQV 132

Query: 125 LYPAMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
            Y  +       ++ E             ++++        + ATT +  +   +  R  
Sbjct: 133 RYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFVFATTEIRKVPVTVLSRCQ 192

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
               L   E   L   + + A    + V ++A   IA  + G+ R A  L     D A  
Sbjct: 193 -RFDLRRVESATLMAHLTKIATAEHVEVDEDALRLIARAAEGSVRDALSL----TDQAIA 247

Query: 236 AHAKTITREIADAAL 250
             A  +T +     L
Sbjct: 248 HGAGAVTAQAVRDML 262


>gi|18414193|ref|NP_568114.1| cell division cycle protein 48, putative / CDC48, putative
           [Arabidopsis thaliana]
 gi|28201771|sp|Q9LZF6|CD48E_ARATH RecName: Full=Cell division control protein 48 homolog E;
           Short=AtCDC48e; AltName: Full=Transitional endoplasmic
           reticulum ATPase E
 gi|26449352|dbj|BAC41803.1| putative transitional endoplasmic reticulum ATPase [Arabidopsis
           thaliana]
 gi|26452166|dbj|BAC43171.1| putative transitional endoplasmic reticulum ATPase [Arabidopsis
           thaliana]
 gi|30102750|gb|AAP21293.1| At5g03340 [Arabidopsis thaliana]
 gi|332003204|gb|AED90587.1| cell division control protein 48-e [Arabidopsis thaliana]
          Length = 810

 Score = 56.6 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 52/270 (19%), Positives = 89/270 (32%), Gaps = 43/270 (15%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------------VLFVGPPGLGKTTLA 71
            L+E  G  +     K   +  +     L H              +L  GPPG GKT +A
Sbjct: 200 RLDE-VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIA 258

Query: 72  QVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEE 123
           + VA E G  F   +GP I          +L       E     ++FIDEI  ++   E+
Sbjct: 259 RAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREK 318

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
                        +V +  +      + +   ++ AT R   +   L+ RFG        
Sbjct: 319 -----TNGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALR-RFG--RFDREI 370

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV-RDFAEVAHAKTIT 242
           +I     I +   ++  +   +    E         RI+      V  D A +      T
Sbjct: 371 DIGVPDEIGR--LEVLRIHTKNMKLAEDV----DLERISKDTHGYVGADLAAL-----CT 419

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIA 272
                    ++ +  +  D +D   L  +A
Sbjct: 420 EAALQCIREKMDVIDLEDDSIDAEILNSMA 449



 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 55/294 (18%), Positives = 96/294 (32%), Gaps = 39/294 (13%)

Query: 2   MDREGLLSRNVSQE-------DADISLLR------PR-TLEEFTGQVEACSNLKVFIEAA 47
           +D E L S  VS E       +++ S LR      P  + E+  G       L+  ++  
Sbjct: 440 IDAEILNSMAVSNEHFHTALGNSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYP 499

Query: 48  KARAEAL--------DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKA 93
               E            VLF GPPG GKT LA+ +A E   NF S  GP +         
Sbjct: 500 VEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESE 559

Query: 94  GDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINL 151
            ++  +          VLF DE+  ++         A      D ++ +  +        
Sbjct: 560 ANVREIFDKARQSAPCVLFFDELDSIATQRGNSAGDA--GGAADRVLNQLLTEMDGMNAK 617

Query: 152 SRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAAC 209
               +I AT R  ++ + L    R    I +   + +    I +   + + +A   +   
Sbjct: 618 KTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDEDSRLNIFKACLRKSPVAKDVDVTA 677

Query: 210 EIAMRSRGTPRIAGRLLRRVRDFAEVAH-----AKTITREIADAALLRLAIDKM 258
                   +      + +R   +A   +          R     A+    +D  
Sbjct: 678 LAKYTQGFSGADITEICQRACKYAIRENIEKDIENERRRSQNPEAMEEDMVDDE 731


>gi|325989702|ref|YP_004249401.1| ATP-dependent protease La [Mycoplasma suis KI3806]
 gi|323574787|emb|CBZ40447.1| ATP-dependent protease La [Mycoplasma suis]
          Length = 814

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 54/270 (20%), Positives = 101/270 (37%), Gaps = 44/270 (16%)

Query: 32  GQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           G  +    +  F+   K        V+  VGPPG+GKT+LAQ +A+ L       S   +
Sbjct: 359 GLEKVKERIMEFVAVQKKTKNPQGTVICLVGPPGVGKTSLAQSIAKGLNKECVKISLGGM 418

Query: 91  AKAGDLA------------ALLTNLED----RDVLFIDEIHRL--------SIIVEEILY 126
               ++              ++  L+       +  +DEI ++           + E+L 
Sbjct: 419 NDEAEIRGHRKTYVGAMPGKIIRGLKQAKVSNPLFLLDEIDKMVESHHGDPISALLEVLD 478

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           P      +D  + E       +++LS+   IA       + +PL DR  I    ++ E E
Sbjct: 479 PKQNSEFMDNYIEE-------EVDLSKIMFIATANYEDNIPDPLLDRLEIIRLTSYTERE 531

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
            L+             V +E A + +  +     I   + +  R+ A V + K    +IA
Sbjct: 532 KLEI----TKNKLISEVLEEHALKPSELTFKDEAITYIIQKYTRE-AGVRNLKQCLAKIA 586

Query: 247 DAALLRLAIDKMGFDQLDL------RYLTM 270
              + R  + + G D  ++      +YL+ 
Sbjct: 587 RKFIQRQEM-ENGPDSEEITIELVKKYLST 615


>gi|297182623|gb|ADI18781.1| DNA polymerase III, gamma/tau subunits [uncultured SAR11 cluster
           bacterium HF4000_37C10]
          Length = 547

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 50/319 (15%), Positives = 95/319 (29%), Gaps = 72/319 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA------- 75
           RP+  +E  GQ      L   I++ +         +  G  G GKT+ A++++       
Sbjct: 6   RPKNFKELIGQDVMVETLVNSIKSNRIAQA----FMLTGERGTGKTSTARIISKSLTCTG 61

Query: 76  --------------------RELGVNFRSTSGPVIAKAGDLAALLTNLEDRD------VL 109
                                +  ++             D+  ++     +       + 
Sbjct: 62  NFLEGVKCETGEICHCEEITNDKHLDVTECDAASRTGVDDVRQIIDAARYKPTTAKYKIY 121

Query: 110 FIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
            IDE H LS      L   +E+                     +   I  TT    +   
Sbjct: 122 IIDECHMLSRSAWNALLKTLEE------------------PPDQLKFIFCTTEPKKIPLT 163

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           +  R      L+   I+ L   +++ +++    ++D A   IA  S G+ R A  LL R 
Sbjct: 164 IASRCQ-TFHLHRASIKVLFDHLKKISRIENGKISDSAIKLIAKASTGSVRDAISLLDRA 222

Query: 230 --------RDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVG 281
                   ++  E    K +        L  L     G  +  +  L  +         G
Sbjct: 223 LVNQHVSEKEVDEATVRKMLGVADRSKILELLKFIFDGDQKQSIESLKQMIDE------G 276

Query: 282 IETISAGLSEPRDAIEDLI 300
           ++  +A L      +   I
Sbjct: 277 LD--AASLKNDILELLYFI 293


>gi|269796484|ref|YP_003315939.1| membrane protease FtsH catalytic subunit [Sanguibacter keddieii DSM
           10542]
 gi|269098669|gb|ACZ23105.1| membrane protease FtsH catalytic subunit [Sanguibacter keddieii DSM
           10542]
          Length = 684

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 63/244 (25%), Positives = 98/244 (40%), Gaps = 23/244 (9%)

Query: 26  TLEEFTGQVEACSNLK----VFIEAAKARA---EALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  EA   L+       E AK +A   +    VL  GPPG GKT LA+ VA E 
Sbjct: 160 TFADVAGADEAVEELREIQEFLSEPAKFQAVGAKIPKGVLLYGPPGTGKTLLARAVAGEA 219

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG       V   A  +  L    ++    ++F+DEI  +       +    +
Sbjct: 220 GVPFYSISGSDFVEMFVGVGASRVRDLFNQAKESAPAIIFVDEIDAVGRHRGAGMGGGHD 279

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
           + +  L   +           +   LIAAT R  +L   L    RF   I +   +++  
Sbjct: 280 EREQTL--NQLLVEMDGFDVKANVILIAATNRPDILDPALLRPGRFDRQIAVEAPDLQGR 337

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             I++  AK   +        ++   +R TP  +G  L  V + A +  A++  + I D 
Sbjct: 338 ADILEVHAKGKPIVD----GVDLRAVARRTPGFSGADLANVLNEAALLTARSGAQLIDDR 393

Query: 249 ALLR 252
           AL  
Sbjct: 394 ALDE 397


>gi|242066704|ref|XP_002454641.1| hypothetical protein SORBIDRAFT_04g034710 [Sorghum bicolor]
 gi|241934472|gb|EES07617.1| hypothetical protein SORBIDRAFT_04g034710 [Sorghum bicolor]
          Length = 362

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 77/234 (32%), Gaps = 40/234 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP++L +     +    +             L H+L  GPPG GKT+    VAR
Sbjct: 40  PWVEKYRPQSLADVAAHRDIVDTIDRL-----TNENRLPHLLLYGPPGTGKTSTILAVAR 94

Query: 77  ------------ELGVNFRSTSGPVIAKAGDLAALLT-NLEDRD---VLFIDEIHRLSII 120
                       EL  +       V  +  D A   + +   R    ++ +DE   ++  
Sbjct: 95  KLYGSQYSNMILELNASDERGIDVVRQQIQDFAGARSLSFGARPSVKLVLLDEADAMTKD 154

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            +  L   +E +            RS +  L           V  +   LQ R     R 
Sbjct: 155 AQFALRRVIEKYT-----------RSTRFAL-------ICNHVNKIIPALQSRC-TRFRF 195

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
              +   ++  +Q   K  GL+V +     +   S G  R A  +L+     ++
Sbjct: 196 APLDGSHVRERLQHIIKSEGLSVDEGGLTALVRLSNGDMRKALNILQSTHMASQ 249


>gi|190571334|ref|YP_001975692.1| DNA polymerase III, gamma and tau subunits [Wolbachia endosymbiont
           of Culex quinquefasciatus Pel]
 gi|213018730|ref|ZP_03334538.1| DNA polymerase III, gamma and tau subunits [Wolbachia endosymbiont
           of Culex quinquefasciatus JHB]
 gi|190357606|emb|CAQ55047.1| DNA polymerase III, gamma and tau subunits [Wolbachia endosymbiont
           of Culex quinquefasciatus Pel]
 gi|212995681|gb|EEB56321.1| DNA polymerase III, gamma and tau subunits [Wolbachia endosymbiont
           of Culex quinquefasciatus JHB]
          Length = 527

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 80/227 (35%), Gaps = 25/227 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP + ++  GQ          +E A    +    +L  G  G+GKTT A+++A  L  + 
Sbjct: 8   RPSSFKDLVGQDILV----RILENAFTLNKIPQSILLSGSSGIGKTTTARIIALCLNCS- 62

Query: 83  RSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVE-----EILYPAMEDFQLD 135
               GP     G   + L   N    DV+ ID     S+        +I Y  +      
Sbjct: 63  ---LGPTFEPCGSCTSCLAIKNSSHPDVVEIDAASHTSVEDVRAILGDICYLPISSKFKV 119

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             ++++   S    I ATT +  +   +  R      L+     
Sbjct: 120 YIIDEVHMLSSNAFNALLKTLEEPPSSVKFILATTEIKKIPITVIARCQ-RFDLHNIPSA 178

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
            +   +   A+     +  EA+  IA     + R A  L+ +   ++
Sbjct: 179 KIMERLNDIAQKENYFIEKEASELIAHHCSNSMRNALFLMNQALLYS 225


>gi|124485079|ref|YP_001029695.1| hypothetical protein Mlab_0252 [Methanocorpusculum labreanum Z]
 gi|124362620|gb|ABN06428.1| ATPase associated with various cellular activities, AAA_3
           [Methanocorpusculum labreanum Z]
          Length = 316

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 78/223 (34%), Gaps = 25/223 (11%)

Query: 30  FTGQVEACSN-LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
             GQ  A    L  F+           +VL  G PG+ KT LA+ +A  +  +F      
Sbjct: 25  IVGQENAIEKTLLTFLAGG--------NVLLEGVPGVAKTLLARSLAGSINGSFSRIQFT 76

Query: 89  VIAKAGDLAA-LLTNLEDRD-----------VLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
                 D+   ++ NL+  +           ++  DEI+R    V+  L   M++ Q+ +
Sbjct: 77  PDLLPSDITGTVVFNLKSNEFTTVLGPVFHHIILADEINRAPPKVQSALLEGMQEHQVTI 136

Query: 137 MVGEGPSARSVKINLSRFTLIAATTR-VGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
              +G +           T     +     L     DRF   I ++   +ED   I++R 
Sbjct: 137 ---QGTTFPLPSPFFVIATENPLESEGTYPLPEAETDRFMTKIIMSLPSVEDEIKILERV 193

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
                       + E  M  + + +      +  R  AE+  A
Sbjct: 194 CGEQAPLAEPVISIERVMAVQNSVKKIYANEKIHRYIAEIVGA 236


>gi|289740707|gb|ADD19101.1| mitochondrial ATP-dependent protease PIM1/LON [Glossina morsitans
           morsitans]
          Length = 1060

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 39/250 (15%), Positives = 81/250 (32%), Gaps = 38/250 (15%)

Query: 25  RTLE-EFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNF 82
           + L+ +  G  +    +  FI  +  +      +L F GPPG+GKT++A+ +AR L   +
Sbjct: 584 KILDNDHYGMDDIKKRILEFIAVSHLKGTTQGKILCFHGPPGVGKTSIARSIARALNREY 643

Query: 83  RSTSGPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE---- 122
              S   +    ++                        +  ++ IDE+ ++    +    
Sbjct: 644 FRFSVGGMTDVAEIKGHRRTYVGAMPGKLIQCLKKTKTENPLVLIDEVDKIGKGYQGDPS 703

Query: 123 ----EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
               E+L P      LD           V ++LS    I     +  +  PL+DR  +  
Sbjct: 704 SALLELLDPEQNANFLD-------HYLDVPVDLSHVLFICTANVIETIPEPLRDRMELIE 756

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
              +   E +       A+   +                +      L+R     + V + 
Sbjct: 757 MSGYVAEEKVA-----IARQYLIPQAMNECGIDKKHITISEDALNTLIRNYCRESGVRNL 811

Query: 239 KTITREIADA 248
           +    ++   
Sbjct: 812 QKQIEKVVRK 821


>gi|304315869|ref|YP_003851014.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777371|gb|ADL67930.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 611

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 60/246 (24%), Positives = 90/246 (36%), Gaps = 23/246 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  E    L+  +E  K   + LD        VL VGPPG GKT LA+ VA E 
Sbjct: 156 TFNDVAGADEEKEELQEIVEFLKFPKKFLDLGARIPKGVLLVGPPGTGKTLLAKAVAGEA 215

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG       V   A  +  L    +     ++FIDEI  +       L    +
Sbjct: 216 GVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNSPCIIFIDEIDAVGRHRGAGLGGGHD 275

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E       +       +IAAT R  +L   L    RF   + +   +I+
Sbjct: 276 EREQTLNQLLVEMDGFSVNEG----IIVIAATNRPDILDPALLRPGRFDRHVTVGVPDIK 331

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++  ++   LA               T      L+            K IT    
Sbjct: 332 GREEILKVHSRNKPLAPDVSLKVLARRTPGFTGADIENLMNEAALLTARKGMKQITMVEL 391

Query: 247 DAALLR 252
           + A+ R
Sbjct: 392 EEAITR 397


>gi|239819394|gb|ACS28251.1| cell division control protein [Nicotiana glutinosa]
          Length = 805

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 86/256 (33%), Gaps = 20/256 (7%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVARE 77
           + E+  G       L+  ++      E            VLF GPPG GKT LA+ +A E
Sbjct: 479 SWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANE 538

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
              NF S  GP +          ++  +          VLF DE+  ++      +  A 
Sbjct: 539 CQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDA- 597

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                D ++ +  +            +I AT R  ++   L    R    I +   + + 
Sbjct: 598 -GGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDS 656

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
              I +   + + L+   +           +      + +R   +A   + +    +   
Sbjct: 657 RHQIFKACLRKSPLSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIEKERK 716

Query: 248 AALLRLAIDKMGFDQL 263
            +    ++D+   D++
Sbjct: 717 RSENPDSMDEDADDEI 732



 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 56/273 (20%), Positives = 90/273 (32%), Gaps = 49/273 (17%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------------VLFVGPPGLGKTTLA 71
            L+E  G  +     K   +  +     L H              +L  GPPG GKT +A
Sbjct: 201 RLDE-VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIA 259

Query: 72  QVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEE 123
           + VA E G  F   +GP I          +L       E     ++FIDEI  ++   E+
Sbjct: 260 RAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREK 319

Query: 124 ILYPA---MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                   +    L LM G    A  +        ++ AT R   +   L+ RFG   R 
Sbjct: 320 THGEVERRIVSQLLTLMDGLKSRAHVI--------VMGATNRPNSIDPALR-RFGRFDRE 370

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV-RDFAEVAHAK 239
               + D    ++    +  +   +    E         RI+      V  D A +    
Sbjct: 371 IDIGVPDEVGRLE----VLRIHTKNMKLAEEV----DLERISKDTHGYVGADLAAL---- 418

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIA 272
             T         ++ +  +  D +D   L  +A
Sbjct: 419 -CTEAALQCIREKMDVIDLEDDSIDAEILNSMA 450


>gi|198428899|ref|XP_002131849.1| PREDICTED: similar to Lon [Ciona intestinalis]
          Length = 990

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 50/274 (18%), Positives = 97/274 (35%), Gaps = 42/274 (15%)

Query: 32  GQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           G  +  + +  FI  +  R+     +L F GPPG+GKT++A+ +AR L   +   S   +
Sbjct: 532 GMDDVKNRILEFIAVSILRSHTHGKILCFHGPPGVGKTSIARSIARALNREYFRFSVGGM 591

Query: 91  AKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE--------EILY 126
               ++                        +  ++ IDE+ ++    +        E+L 
Sbjct: 592 HDVAEIKGHRRTYVGAMPGKMIQCLKKTKTENPLVLIDEVDKIGRGYQGDPSSALLELLD 651

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           P      LD  +        V ++LS+   I     +  + +PL+DR  + I+++ Y  E
Sbjct: 652 PEQNHNFLDHYL-------DVTVDLSKVLFICTANVLDTIPDPLKDRMEM-IQVSGYVAE 703

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +   I    A+   +  T E       ++         L++     + V        +I 
Sbjct: 704 EKTAI----ARKYLIPQTHEQCGLNEDKAFVEDEALDLLIKNYCRESGVRGLLQQIEKIH 759

Query: 247 DAALLRLAIDKMGFDQLDLRYL-TMIARNFGGGP 279
             A    A   +     D   +      +F G P
Sbjct: 760 RKA----AFKLVNEQSEDRVVVNQSNLEDFVGKP 789


>gi|149194984|ref|ZP_01872077.1| ZINC METALLOPEPTIDASE [Caminibacter mediatlanticus TB-2]
 gi|149134905|gb|EDM23388.1| ZINC METALLOPEPTIDASE [Caminibacter mediatlanticus TB-2]
          Length = 647

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 60/262 (22%), Positives = 95/262 (36%), Gaps = 27/262 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78
             ++  G  EA   +K  ++  K     +D        VL VGPPG GKT LA+ VA E 
Sbjct: 170 KFDDVAGNDEAKEEVKEIVDFLKNPDRYIDLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 229

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAME 130
            V F + SG       V   A  +  L    +     ++FIDEI  +             
Sbjct: 230 DVPFFAVSGSSFIEMFVGVGAARVRDLFNQAKKEAPSIIFIDEIDAIGKSRAAGGPMGGN 289

Query: 131 D---FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           D     L+ ++ E     S +       ++AAT R  +L   L    RF   + ++  + 
Sbjct: 290 DEREQTLNQLLAEMDGFDSNE----PVIVLAATNRPEVLDPALLRPGRFDRQVLVDKPDF 345

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           +    I++   K    A  D    EIA  + G       L   V + A +A  K      
Sbjct: 346 KGRVEILKVHIKKIK-AGKDVDLEEIARMTAGLA--GADLANIVNEAALLAGRKNKKEVN 402

Query: 246 ADAALLRLAIDKMGFDQLDLRY 267
            +  +  +     G ++   R 
Sbjct: 403 QEDFVEAVERQIAGLEKKSRRL 424


>gi|194365245|ref|YP_002027855.1| ATP-dependent metalloprotease FtsH [Stenotrophomonas maltophilia
           R551-3]
 gi|194348049|gb|ACF51172.1| ATP-dependent metalloprotease FtsH [Stenotrophomonas maltophilia
           R551-3]
          Length = 644

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 53/246 (21%), Positives = 88/246 (35%), Gaps = 23/246 (9%)

Query: 26  TLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  EA   +   +       +  K   +    VL VGPPG GKT LA+ +A E 
Sbjct: 162 TFADVAGCDEAKEEVGELVDFLRDPSKFTKLGGKIPRGVLMVGPPGTGKTLLAKAIAGEA 221

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  +    +     ++FIDEI  +       L    +
Sbjct: 222 KVPFFSISGSDFVEMFVGVGASRVRDMFEQAKKHAPCIIFIDEIDAVGRHRGAGLGGGHD 281

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E       +       +IAAT R  +L   L    RF   + +   +++
Sbjct: 282 EREQTLNQLLVEMDGFEGGEG----VIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVK 337

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++   +   LA   E           +      L      FA   + K +  +  
Sbjct: 338 GREHILKVHMRKLPLADDVEPMVIARGTPGFSGADLANLCNEAALFAARGNEKEVRMDHF 397

Query: 247 DAALLR 252
           D A  +
Sbjct: 398 DRARDK 403


>gi|320031241|gb|EFW13219.1| LON serine protease [Coccidioides posadasii str. Silveira]
          Length = 1067

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 71/192 (36%), Gaps = 33/192 (17%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI   K R      +L FVGPPG+GKT++ + +AR L   +   S
Sbjct: 543 EDHYGLKDVKDRILEFIAVGKLRGTVEGKILCFVGPPGVGKTSIGKSIARALNRQYYRFS 602

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ ++    +        
Sbjct: 603 VGGLTDVAEIKGHRRTYVGALPGRIIQALKKCQTENPLILIDEVDKIGRGHQGDPSSALL 662

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V ++LS+   +        +  PL DR  I I L+ 
Sbjct: 663 ELLDPEQNSSFLD-------HYMDVPVDLSKVLFVCTANMTDTIPRPLLDRMEI-IELSG 714

Query: 183 YEIEDLKTIVQR 194
           Y  ++   I +R
Sbjct: 715 YVADEKMAIAER 726


>gi|313664897|ref|YP_004046768.1| DNA polymerase III, subunit gamma and tau [Mycoplasma leachii PG50]
 gi|312949914|gb|ADR24510.1| DNA polymerase III, subunit gamma and tau [Mycoplasma leachii PG50]
          Length = 664

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 66/207 (31%), Gaps = 39/207 (18%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           + + +     RP+      G       L+  I+  +        +LF G  G GKT++A+
Sbjct: 3   TNKQSLYRAYRPKDFSSVAGHNNIKEILEKQIKDNRINHA----LLFSGQRGTGKTSVAR 58

Query: 73  VVARELGVNFRSTS------------------------GPVIAKAGDLAALLTNL----- 103
           + A+ +       S                                ++  +  ++     
Sbjct: 59  IFAKTINCLNLIGSKACEQCNNCKLANENQLIDIIEIDAASNNGVDEIREIKNSVSTLPI 118

Query: 104 -EDRDVLFIDEIHRLSIIVEEILYPAMEDFQL--DLMVGEGPSARSVKINLSRFTLIAAT 160
                V  IDE+H L+      L   +E+  +    ++      +  +  LSR  +   T
Sbjct: 119 NSKYKVYIIDEVHMLTKQAFNALLKTLEEPPVYAIFILATTEFNKIPQTILSRCQIFNFT 178

Query: 161 TRVGLLTNPLQDRFGIPIRLNFYEIED 187
                  N L++R    +    Y+IE 
Sbjct: 179 KIK---KNSLKNRLQYIVNQENYQIEK 202


>gi|297811665|ref|XP_002873716.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297319553|gb|EFH49975.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 685

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 63/293 (21%), Positives = 107/293 (36%), Gaps = 28/293 (9%)

Query: 26  TLEEFTG-----Q--VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G     Q   E    LK   + +   A+    VL  GPPG GKT LA+ +A E 
Sbjct: 221 TFDDVAGVDEAKQDFEEIVEFLKTPEKFSALGAKIPKGVLLTGPPGTGKTLLAKAIAGEA 280

Query: 79  GVNFRSTSGPVIA------KAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG           A  +  L    +     ++FIDEI  +  +    +    +
Sbjct: 281 GVPFFSLSGSEFIEMFVGVGASRVRDLFNRAKANSPCIVFIDEIDAVGRMRGTGIGGGND 340

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E               +IAAT R  +L + L    RF   + +   +I 
Sbjct: 341 EREQTLNQILTEMDGFTGNTG----VIVIAATNRPEILDSALLRPGRFDRQVSVGLPDIR 396

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++  +K   L      +         +      L+      A       IT    
Sbjct: 397 GREEILKVHSKSKKLDKDVSLSVIAMRTPGFSGADLANLMNEAAILAGRRGKDKITLTEI 456

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           D ++ R+     G   +D +   ++A +  G       I A L+E  D ++ +
Sbjct: 457 DDSIDRIVAGMEGTKMVDGKSKAIVAYHEVGH-----AICATLTEGHDPVQKV 504


>gi|325982976|ref|YP_004295378.1| ATP-dependent metalloprotease FtsH [Nitrosomonas sp. AL212]
 gi|325532495|gb|ADZ27216.1| ATP-dependent metalloprotease FtsH [Nitrosomonas sp. AL212]
          Length = 613

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 61/263 (23%), Positives = 95/263 (36%), Gaps = 29/263 (11%)

Query: 26  TLEEFTGQVEACSNL-------KVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  EA   L       K  ++  +    A   +L VGPPG GKT LA+ VA E 
Sbjct: 154 TFDDVAGVDEAKEELVEIINFLKNPVDYGRLGGRAPKGILLVGPPGTGKTLLARAVAGEA 213

Query: 79  GVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           GV F S SG            A+  DL      +    ++FIDE+  L            
Sbjct: 214 GVPFFSISGSEFVEMFVGVGAARVRDLFEQARQMAP-AIIFIDELDALGRARGAYGLGGG 272

Query: 130 ED---FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
            D     L+ ++ E     S     S   L+AAT R  +L   L    RF   + ++  +
Sbjct: 273 HDEKEQTLNQLLAELDGFDSS----SGIVLLAATNRPEILDPALLRAGRFDRQVLVDRPD 328

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
               + I+   A+   L          A+    T      L+      A    A ++T  
Sbjct: 329 KIGREQILNVHARKVKLHSDVRIEEVAALTPGFTGADLANLINEATLLATRRAAPSVTMA 388

Query: 245 IADAALLRLAIDKMGFDQLDLRY 267
             + A+ R+     G ++ +   
Sbjct: 389 DFNNAIERIVA---GLEKRNRLL 408


>gi|190573712|ref|YP_001971557.1| putative cell division FtsH protein [Stenotrophomonas maltophilia
           K279a]
 gi|190011634|emb|CAQ45253.1| putative cell division FtsH protein [Stenotrophomonas maltophilia
           K279a]
          Length = 646

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 53/246 (21%), Positives = 88/246 (35%), Gaps = 23/246 (9%)

Query: 26  TLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  EA   +   +       +  K   +    VL VGPPG GKT LA+ +A E 
Sbjct: 164 TFADVAGCDEAKEEVGELVDFLRDPSKFTKLGGKIPRGVLMVGPPGTGKTLLAKAIAGEA 223

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  +    +     ++FIDEI  +       L    +
Sbjct: 224 KVPFFSISGSDFVEMFVGVGASRVRDMFEQAKKHAPCIIFIDEIDAVGRHRGAGLGGGHD 283

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E       +       +IAAT R  +L   L    RF   + +   +++
Sbjct: 284 EREQTLNQLLVEMDGFEGGEG----VIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVK 339

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++   +   LA   E           +      L      FA   + K +  +  
Sbjct: 340 GREHILKVHMRKLPLADDVEPMVIARGTPGFSGADLANLCNEAALFAARGNEKEVRMDHF 399

Query: 247 DAALLR 252
           D A  +
Sbjct: 400 DRARDK 405


>gi|71002728|ref|XP_756045.1| cell division control protein Cdc48 [Aspergillus fumigatus Af293]
 gi|28394450|gb|AAM08677.1| Cdc48p [Aspergillus fumigatus]
 gi|66853683|gb|EAL94007.1| cell division control protein Cdc48 [Aspergillus fumigatus Af293]
 gi|159130099|gb|EDP55213.1| cell division control protein Cdc48 [Aspergillus fumigatus A1163]
          Length = 819

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 48/258 (18%), Positives = 86/258 (33%), Gaps = 17/258 (6%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLED 105
           +    +L  GPPG GKT +A+ VA E G  F   +GP I          +L       E 
Sbjct: 254 KPPRGILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEK 313

Query: 106 RD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
               ++FIDEI  ++   E+             +V +  +        S   ++AAT R 
Sbjct: 314 NSPAIIFIDEIDSIAPKREK-----TNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRP 368

Query: 164 GLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRI 221
             +   L+   RF   + +   +      I+    K   LA   +     A         
Sbjct: 369 NSIDPALRRFGRFDREVDIGIPDPTGRLEILSIHTKNMKLAEDVDLETIAAETHGYVGSD 428

Query: 222 AGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVG 281
              L        +    K    ++ +  +    +D +G    + RY   ++       V 
Sbjct: 429 LASLCSEAAM--QQIREKMDLIDLDEDTIDAEVLDSLGVTMENFRYALGVSNPSALREVA 486

Query: 282 IETISAGLSEPRDAIEDL 299
           +  +     E    +E++
Sbjct: 487 VVEVPNVRWEDIGGLEEV 504



 Score = 53.9 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 46/218 (21%), Positives = 84/218 (38%), Gaps = 14/218 (6%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--V 108
           VLF GPPG GKT LA+ VA E   NF S  GP +          ++  +          V
Sbjct: 533 VLFYGPPGTGKTMLAKAVANECAANFISVKGPELLSMWFGESESNIRDIFDKARAAAPCV 592

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +F+DE+  ++      +  A      D +V +  +      +     +I AT R   L  
Sbjct: 593 VFLDELDSIAKSRGGSVGDA--GGASDRVVNQLLTEMDGMTSKKNVFVIGATNRPEQLDA 650

Query: 169 PLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
            L    R    + +   +    ++I++   + T +A   +     +     +    G + 
Sbjct: 651 ALVRPGRLDTLVYVPLPDQASRESILRAQLRKTPVAPDVDIPFIASKTHGFSGADLGFVT 710

Query: 227 RRVRDFA--EVAHAKTITREIADAALLRLAIDKMGFDQ 262
           +R    A  E   A+   ++  +AA   + +D  G ++
Sbjct: 711 QRAVKLAIKESIAAEIERQKQREAAGEDIKMDDEGEEE 748


>gi|314916066|gb|EFS79897.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL005PA4]
          Length = 717

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 64/276 (23%), Positives = 96/276 (34%), Gaps = 26/276 (9%)

Query: 24  PR-TLEEFTGQVEACSNLKVFIE-----AAKARAEA--LDHVLFVGPPGLGKTTLAQVVA 75
           P+ T  +  G  EA   L+   E     A   R  A     VL  GPPG GKT LA+ VA
Sbjct: 162 PKSTFADVAGCQEAIDELQEIREFLAEPAKFQRVGAKIPKGVLLYGPPGTGKTLLARAVA 221

Query: 76  RELGVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY 126
            E GV F S SG            ++  DL           ++FIDEI  +       + 
Sbjct: 222 GEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKEAAP-AIIFIDEIDAVGRHRGAGMG 280

Query: 127 PAMEDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNF 182
              ++ +  L  ++ E               LIAAT R  +L   L    RF   I +  
Sbjct: 281 GGHDEREQTLNQLLVEMDGFDVHGG----VILIAATNRPDVLDPALLRPGRFDRQIAVEA 336

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            +++    I++  A    +A   + A         T      +L         A+   I 
Sbjct: 337 PDLDGRLKILKVHAHGKPMADDVDLASIARRTPGMTGADLANVLNEAALLTARANLPVIG 396

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
               D A+ R+        +L   +  ++     GG
Sbjct: 397 NFELDEAIDRVIAGPQKKTRLMNEHERLVTAYHEGG 432


>gi|289644014|ref|ZP_06476114.1| DNA polymerase III, subunits gamma and tau [Frankia symbiont of
           Datisca glomerata]
 gi|289506191|gb|EFD27190.1| DNA polymerase III, subunits gamma and tau [Frankia symbiont of
           Datisca glomerata]
          Length = 940

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 42/243 (17%), Positives = 74/243 (30%), Gaps = 25/243 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A  +  RP T  +  GQ      L   +   +         LF GP G GKT+ A+++A 
Sbjct: 4   ALYNRYRPATFAQVVGQEHVTGALMQALRTTRIHHAY----LFSGPRGCGKTSSARILAA 59

Query: 77  ELGVNFRSTSGP--VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILY------PA 128
            L      T  P  V  +   + A ++     DV  ID      +     L       PA
Sbjct: 60  SLNCVDGPTPQPCGVCDQCVSIRAGVSM----DVTEIDAASHGLVDDARDLRERAFFAPA 115

Query: 129 MEDFQLDLMVGE--------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
              F++ ++               + V+        + ATT    +   ++ R       
Sbjct: 116 SARFKVFVVDEAHMVTAAAFNALLKVVEEPPPYLKFVFATTEPDKVIATIRSR-THHYAF 174

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
                  L+  +       G+ V       +     G+ R +  +L ++   A       
Sbjct: 175 RLVPPGVLRDHLTSICAQEGVDVDPTVLPLVVRAGAGSVRDSLSVLDQLLAGAGPDGLGY 234

Query: 241 ITR 243
              
Sbjct: 235 ERA 237


>gi|313125585|ref|YP_004035849.1| ATPase AAA [Halogeometricum borinquense DSM 11551]
 gi|312291950|gb|ADQ66410.1| AAA family ATPase, CDC48 subfamily [Halogeometricum borinquense DSM
           11551]
          Length = 741

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 57/291 (19%), Positives = 103/291 (35%), Gaps = 36/291 (12%)

Query: 16  DADISLLR------PR-TLEEFTGQVEACSNLKVFIE--------AAKARAEALDHVLFV 60
           + + S +R      P+ + ++  G  +    +K  +E          +   E    VL  
Sbjct: 443 EVEPSAMREVLVELPKVSWDDVGGLEDPKQKVKESVEWPLTSRDKFERMGIEPPKGVLLY 502

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDR------DVLFID 112
           GPPG GKT +A+ VA E   NF S  GP  +    G+    +     +       ++F D
Sbjct: 503 GPPGTGKTLIAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFRKARQVSPTIIFFD 562

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+  L+      +   + +  ++ ++ E               +I AT R  ++   L  
Sbjct: 563 ELDSLAPSRGNDMGNNVSERVVNQLLTELDGLEEN----GDVMVIGATNRPDMIDPALIR 618

Query: 173 --RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR-- 228
             RF   + +     E  + I+ R    +     D +  EIA  + G        + R  
Sbjct: 619 SGRFDRLVLIGQPGEEGREQIL-RIHTQSSPLAPDVSLREIAEITEGYVGSDLESIAREA 677

Query: 229 -VRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
            +    E   AK I       A+  +    +  + +D  Y   +   F GG
Sbjct: 678 AIEALREDDDAKEIEMRHFRKAMEAVRP-TITDELMD--YYEQMQDQFKGG 725



 Score = 53.2 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 50/199 (25%), Positives = 75/199 (37%), Gaps = 23/199 (11%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLT 101
           K   E    VL  GPPG GKT LA+ VA E   +F S +GP I           L  +  
Sbjct: 217 KLGIEPPQGVLLHGPPGTGKTLLAKAVANETSASFFSIAGPEIISKYYGESEQQLREIFE 276

Query: 102 NLEDR--DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA 159
           + ++    ++FIDE+  ++   E++           L+               +  +IAA
Sbjct: 277 DAKEESPSIIFIDELDSIAPKREDVTGEVERRVVAQLLTM-----MDGLETRGQVIVIAA 331

Query: 160 TTRVGLLTNPLQ-----DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEI--- 211
           T RV  +   L+     DR       +    +++  I  RG  L+     D  A E    
Sbjct: 332 TNRVDSVDPALRRPGRFDREIEIGVPDESGRKEILQIHTRGMPLSDDVSLDHLADETHGF 391

Query: 212 --AMRSRGTPRIAGRLLRR 228
             A     T   A + LRR
Sbjct: 392 VGADIESLTKEAAMKALRR 410


>gi|223558002|gb|ACM91008.1| DNA polymerase III subunit gamma/tau [uncultured bacterium URE4]
          Length = 577

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 78/246 (31%), Gaps = 54/246 (21%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP + E   GQ      L      +  R +     LF GP G+GKTT A++ A+ +
Sbjct: 8   ARKYRPDSFETLLGQDNIARTLS----NSIKRGQLAHAYLFCGPRGVGKTTTARIFAKMI 63

Query: 79  GVNF-------------------------RSTSGPVIAKAGDLAALLTNLE------DRD 107
                                                    D+ AL+  ++         
Sbjct: 64  NCAHPGPDMEPCGECESCVSFQEGRSYCIHELDAASNNGVDDIKALIEQVQVPPQVGKYS 123

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           V  IDE+H LS          +E+          P A ++         + ATT    + 
Sbjct: 124 VYIIDEVHMLSQSAFNAFLKTLEE----------PPAHAI--------FVLATTEKHKIL 165

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             +  R       N   I D+   ++  A   G+ + DE+   IA ++ G  R A  +  
Sbjct: 166 PTILSRCQ-TYDFNRIGIPDMVRNLRGIAAKEGITIDDESLHVIAQKADGAMRDALTIFD 224

Query: 228 RVRDFA 233
           +   F 
Sbjct: 225 QTVAFC 230


>gi|308159348|gb|EFO61882.1| Topoisomerase II [Giardia lamblia P15]
          Length = 483

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 52/210 (24%), Positives = 82/210 (39%), Gaps = 23/210 (10%)

Query: 19  ISLLRPR-TLEEFTGQVEACSNLK-------VFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           I  ++P    ++  G  +A   LK       +F +  + + E    +L  G PG GK+ L
Sbjct: 114 IVRMKPDVKWDDVVGLEKAKEALKEAVILPMMFPQLFQGKREPWRGILLYGCPGTGKSFL 173

Query: 71  AQVVARELGVNFRSTSGP--VIAKAGDLAAL------LTNLEDRDVLFIDEIHRLSIIV- 121
           A+ VA E    F S S    V    G+ A L      L   E + V+FIDEI  L+    
Sbjct: 174 AKAVAAECDATFFSVSSSDLVSKYVGESARLIKALFELARAEKQAVIFIDEIDALASARG 233

Query: 122 -EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
             E    + +     L+  +G     V        ++ AT     L + ++ RF   I +
Sbjct: 234 GGEESDASRQIKTEFLVQMQG-----VGKTGGNVLVLGATNYPEALDSAIRRRFEKRIEI 288

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACE 210
              +    K I++ G   T   +TD    E
Sbjct: 289 VLPDAAARKNILRSGIGATPNVLTDNDFAE 318


>gi|302143743|emb|CBI22604.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 45/215 (20%), Positives = 78/215 (36%), Gaps = 37/215 (17%)

Query: 9   SRNVSQEDADISLLRPR---------TLEEFTGQVEACSNLKVFIEAAKARAEALDH--- 56
           S+   + +   S +RP          T ++     +   +L+  +     R E       
Sbjct: 486 SKVFPRCNEFESRIRPEVIPPNRIGVTFDDIGALDDIKESLEELVMFPLQRPEIFKGGLL 545

Query: 57  -----VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLED 105
                +L  GPPG GKT LA+ +A E G +F + S   I          ++ AL T    
Sbjct: 546 KPCRGILLFGPPGTGKTMLAKAMANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAK 605

Query: 106 --RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINL-----SRFTLIA 158
               ++F+DE+  +            ED  +  +  E     +    L      R  ++A
Sbjct: 606 ISPTIIFVDEVDSMLGQR----LEFGEDCSMRKIKNE---FMTHWDGLLTKAGERVLVLA 658

Query: 159 ATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           AT R   L   +  RF   I +    +E  + I++
Sbjct: 659 ATNRPFDLDEAIIRRFDHRIMVGLPSVESREMILK 693


>gi|322420971|ref|YP_004200194.1| ATP-dependent metalloprotease FtsH [Geobacter sp. M18]
 gi|320127358|gb|ADW14918.1| ATP-dependent metalloprotease FtsH [Geobacter sp. M18]
          Length = 616

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 61/254 (24%), Positives = 96/254 (37%), Gaps = 43/254 (16%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  EA   L+  +E  K          +    VL VGPPG GKT LA+ VA E 
Sbjct: 173 TFADVAGMEEAKQELREVVEYLKEPDKFRQIGGKVPKGVLLVGPPGTGKTLLARAVAGEA 232

Query: 79  GVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           GV F S S             ++  DL A    +    ++FIDE+  +            
Sbjct: 233 GVPFFSISASAFIEMFVGVGASRVRDLFASARRVLP-SIIFIDELDAVGRSRGAGFGGGH 291

Query: 130 EDFQLDL------MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ-----DRFGIPI 178
           ++ +  L      M G  P    V I        AAT R  +L   L      DR  +  
Sbjct: 292 DEREQTLNQLLSEMDGFDPHTEVVVI--------AATNRPDVLDPALLRPGRFDRNVVIE 343

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
           R ++ + E +  +  R      + +  +   E+ + ++GTP + G  L  + + A +  A
Sbjct: 344 RPDWRDREKILKVHTR-----RIPLAPD--VELTVIAKGTPGMTGADLEGLVNEAAILAA 396

Query: 239 KTITREIADAALLR 252
           +     +    L R
Sbjct: 397 RENKLVVGLHDLER 410


>gi|146305021|ref|YP_001192337.1| proteasome-activating nucleotidase [Metallosphaera sedula DSM 5348]
 gi|145703271|gb|ABP96413.1| Proteasome-activating nucleotidase [Metallosphaera sedula DSM 5348]
          Length = 379

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 50/276 (18%), Positives = 94/276 (34%), Gaps = 25/276 (9%)

Query: 13  SQEDADISLL----RPR-TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLF 59
            ++D  +  +    RP    ++  G  +    ++  +E    + E            +L 
Sbjct: 101 DRDDPLVRSMEVVERPNVRYQDIGGLDQQIQEVREVVELPLKKPELFKELGITPPKGILL 160

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFI 111
            GPPG GKT LA+ VA E   +F                A  +  +      +   ++FI
Sbjct: 161 YGPPGTGKTMLAKAVATESNASFIHVVASEFAQKFVGEGARVVRDVFELARKKAPSIVFI 220

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DEI  +     +       + ++   + +  +       L    +IAAT R+ +L   L 
Sbjct: 221 DEIDAIGAKRVD--LGTSGEREVQRTLMQLLAEIDGFQPLDNVKIIAATNRIDILDPALL 278

Query: 172 D--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
              RF   I +    IE  K I++   +   +  +        M    +      L    
Sbjct: 279 RPGRFDRLIEIPLPNIEGRKQILRIYLQKMKVDNSVNVDELAMMTEGFSGADLRNLCTEA 338

Query: 230 RDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDL 265
              A    +  I+     +A+ RL   K+  + +D 
Sbjct: 339 GYIAIRNDSNVISMTHFKSAIERLRSKKLSKEVVDR 374


>gi|118577136|ref|YP_876879.1| AAA ATPase [Cenarchaeum symbiosum A]
 gi|118195657|gb|ABK78575.1| AAA ATPase [Cenarchaeum symbiosum A]
          Length = 728

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 53/209 (25%), Positives = 80/209 (38%), Gaps = 32/209 (15%)

Query: 20  SLLR--PR-TLEEFTGQVEACSNLKVFIEAA--------KARAEALDHVLFVGPPGLGKT 68
             LR  P+ T E+  G  +    ++  IE          K   EA   VL  GPPG GKT
Sbjct: 166 ETLRGVPQVTYEDIGGLTDEIKKVREMIELPLRHPEIFEKLGIEAPKGVLLYGPPGTGKT 225

Query: 69  TLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSII 120
            LA+ VA E   +F S SGP I           L  +     ++   ++F+DEI  ++  
Sbjct: 226 LLAKAVANESNAHFISISGPEIMSKFYGESEARLREIFKEAREKAPSIIFVDEIDSIAPK 285

Query: 121 VEEILYPA---MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFG 175
            EE+       +    L LM G     + + I        +AT R   +   L+   RF 
Sbjct: 286 REEVTGEVERRVVSQMLSLMDGLEARGKVIVI--------SATNRPNAIDPALRRPGRFD 337

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVT 204
             I +   + +  K I+    +   L   
Sbjct: 338 REIEIKVPDKKGRKDILAIHTRNMPLTDD 366



 Score = 40.4 bits (93), Expect = 0.34,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 68/185 (36%), Gaps = 23/185 (12%)

Query: 28  EEFTGQVEACSNLKVFIE--------AAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           +E  G  +    L+  +E          K        +L  G  G GKT LA+ VA +  
Sbjct: 450 DEVGGLEDVKRELQEAVEWPMKYPALYDKLGHRMPRGILLHGASGTGKTLLAKAVATQSE 509

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIV-EEILYPAME 130
            NF S  GP +           +  +          V+F DE+  ++ +   +     + 
Sbjct: 510 ANFVSVKGPELLSKWVGESERGIREIFRRARQASPCVIFFDEVDSIAPVRGADSAATNIT 569

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
           +  +  ++ E         NL    ++AAT R  ++   L    RF   I++   + E  
Sbjct: 570 ERVVSQLLTE----LDGMENLHGVVVLAATNRADMIDPALLRPGRFDKIIQIPLPDKESR 625

Query: 189 KTIVQ 193
            +I++
Sbjct: 626 TSILK 630


>gi|297836963|ref|XP_002886363.1| AAA-type ATPase family protein [Arabidopsis lyrata subsp. lyrata]
 gi|297332204|gb|EFH62622.1| AAA-type ATPase family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 827

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 53/285 (18%), Positives = 98/285 (34%), Gaps = 44/285 (15%)

Query: 9   SRNVSQEDADISLLRPR---------TLEEFTGQVEACSNLKVFIEAAKARAE------- 52
           +  V+ ++     +RP          T ++     +   +L+  +     R +       
Sbjct: 491 APEVAPDNEFEKRIRPEVIPAEEINVTFKDIGALDDIKESLQELVMLPLRRPDLFTGGLL 550

Query: 53  -ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLED 105
                +L  GPPG GKT LA+ +A+E G +F + S   I          ++ AL T    
Sbjct: 551 KPCRGILLFGPPGTGKTMLAKAIAKEAGASFINVSMSTITSKWFGEDEKNVRALFTLASK 610

Query: 106 --RDVLFIDEIH-----RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIA 158
               ++F+DE+      R  +   E +     +F              +     R  ++A
Sbjct: 611 VSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFM-------SHWDGLMTKPGERILVLA 663

Query: 159 ATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGT 218
           AT R   L   +  RF   I +    +E+ + I+ R          +    E+AM + G 
Sbjct: 664 ATNRPFDLDEAIIRRFERRIMVGLPAVENREKIL-RTLLAKEKVDENLDYKELAMMTEGY 722

Query: 219 PRIAGRLL------RRVRDFAEVAHAKTITREIADAALLRLAIDK 257
                + L      R VR+  +    K   ++           D+
Sbjct: 723 TGSDLKNLCTTAAYRPVRELIQQERIKDTEKKKQRETTKAGEEDE 767


>gi|266622121|ref|ZP_06115056.1| cell division protein FtsH [Clostridium hathewayi DSM 13479]
 gi|288866171|gb|EFC98469.1| cell division protein FtsH [Clostridium hathewayi DSM 13479]
          Length = 622

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 47/187 (25%), Positives = 73/187 (39%), Gaps = 21/187 (11%)

Query: 25  RTLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +T  +  GQ EA   LK  +       + A   A      L VGPPG GKT LA+ VA E
Sbjct: 175 KTFADVAGQEEAKDALKEIVDFLHNPQKYADIGASLPKGALLVGPPGTGKTLLARAVAGE 234

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
             V F S SG           A  +  L     ++   ++FIDEI  +    +   +   
Sbjct: 235 AHVPFFSISGSEFVEMFVGMGASKVRDLFKQANEKAPCIVFIDEIDTIGKKRDGGGFSGN 294

Query: 130 EDFQLDLMVGEGPSARSVKINLSR-FTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           ++ +  L       A     +  +   ++AAT R   L   L    RF   I +   ++ 
Sbjct: 295 DEREQTL---NQLLAEMDGFDGKKGVVILAATNRPDSLDKALLRPGRFDRRIPVELPDLG 351

Query: 187 DLKTIVQ 193
             + I++
Sbjct: 352 GREAILK 358


>gi|303310016|ref|XP_003065021.1| ATP-dependent protease La, putative [Coccidioides posadasii C735
           delta SOWgp]
 gi|240104680|gb|EER22876.1| ATP-dependent protease La, putative [Coccidioides posadasii C735
           delta SOWgp]
          Length = 1067

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 71/192 (36%), Gaps = 33/192 (17%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI   K R      +L FVGPPG+GKT++ + +AR L   +   S
Sbjct: 543 EDHYGLKDVKDRILEFIAVGKLRGTVEGKILCFVGPPGVGKTSIGKSIARALNRQYYRFS 602

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ ++    +        
Sbjct: 603 VGGLTDVAEIKGHRRTYVGALPGRIIQALKKCQTENPLILIDEVDKIGRGHQGDPSSALL 662

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V ++LS+   +        +  PL DR  I I L+ 
Sbjct: 663 ELLDPEQNSSFLD-------HYMDVPVDLSKVLFVCTANMTDTIPRPLLDRMEI-IELSG 714

Query: 183 YEIEDLKTIVQR 194
           Y  ++   I +R
Sbjct: 715 YVADEKMAIAER 726


>gi|296128488|ref|YP_003635738.1| ATP-dependent metalloprotease FtsH [Cellulomonas flavigena DSM
           20109]
 gi|296020303|gb|ADG73539.1| ATP-dependent metalloprotease FtsH [Cellulomonas flavigena DSM
           20109]
          Length = 682

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 65/251 (25%), Positives = 105/251 (41%), Gaps = 32/251 (12%)

Query: 24  PR-TLEEFTGQVEACSNLK----VFIEAAKARA---EALDHVLFVGPPGLGKTTLAQVVA 75
           P+ T  +  G  EA   L+       E +K +A   +    VL  GPPG GKT LA+ VA
Sbjct: 166 PKVTFADVAGVDEAVEELQEIKEFLSEPSKFQAVGAKIPKGVLLYGPPGTGKTLLARAVA 225

Query: 76  RELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYP 127
            E GV F S SG       V   A  +  L    ++    ++F+DEI  +       L  
Sbjct: 226 GEAGVPFYSISGSDFVEMFVGVGASRVRDLFQQAKENSPAIIFVDEIDAVGRHRGAGLGG 285

Query: 128 AMEDFQLD----LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLN 181
             ++ +      L+  +G   ++  I       IAAT R  +L   L    RF   + + 
Sbjct: 286 GHDEREQTLNQMLVEMDGFDVKTNVIL------IAATNRPDILDPALLRPGRFDRQVAVE 339

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
             +++  + I+   A+   +A       ++A+ +R TP  +G  L  V + A +  A+  
Sbjct: 340 PPDLKGRERILTVHAQGKPMA----PGVDLAVVARRTPGFSGADLANVLNEAALLTARKG 395

Query: 242 TREIADAALLR 252
            + I D AL  
Sbjct: 396 AQVIDDHALDE 406


>gi|197294533|ref|YP_001799074.1| ATP-dependent Zn protease [Candidatus Phytoplasma australiense]
 gi|171853860|emb|CAM11822.1| ATP-dependent Zn protease [Candidatus Phytoplasma australiense]
          Length = 647

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 50/216 (23%), Positives = 79/216 (36%), Gaps = 14/216 (6%)

Query: 47  AKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA------KAGDLAALL 100
           AK  A     VL  GPPG GKT LA+ VA E GV F + +G           A  +  L 
Sbjct: 200 AKMGARIPKGVLLYGPPGTGKTLLAKAVAGEAGVPFFAAAGSDFDEVYVGLGASRIRDLF 259

Query: 101 TNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIA 158
              +     ++FIDEI  ++     ++     D  L+ ++ E       K       +IA
Sbjct: 260 KEAQLSAPCIVFIDEIEAVAKKRGSVMTSGGSDQTLNQLLVEMDGFNQKKG----VIVIA 315

Query: 159 ATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSR 216
           AT R   L   +    RF     ++   + D + I++  A     +              
Sbjct: 316 ATNRPETLDTAILRPGRFDRHFNISLPNVVDREAILKLHASNKTFSDEVHLGELAKQTPG 375

Query: 217 GTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            +      +L      A   +A  I+++    AL R
Sbjct: 376 FSGAQLEGILNEAALLAARKNAAGISKKDISEALDR 411


>gi|169598684|ref|XP_001792765.1| hypothetical protein SNOG_02147 [Phaeosphaeria nodorum SN15]
 gi|160704448|gb|EAT90359.2| hypothetical protein SNOG_02147 [Phaeosphaeria nodorum SN15]
          Length = 663

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 51/216 (23%), Positives = 77/216 (35%), Gaps = 20/216 (9%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL  GPPG  KT +AQ VA E   NF +  G  + K   G+    + ++  R       +
Sbjct: 433 VLLYGPPGCAKTLIAQAVATESNQNFLAVKGSELIKMYVGESERAIRDIFRRARAAKPCI 492

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +F DEI  +    E+     +      L   +G  A      L    +I AT R  +L +
Sbjct: 493 IFFDEIDSIGKSREKTQDSGLNVVTTLLNEMDGIEA------LKDVFIIGATNRPDILDS 546

Query: 169 PLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
            L    RF   I +     E    I+Q   +   LA   +     A     +      L 
Sbjct: 547 ALIRTGRFDAHIHIGLPTEEARIQILQIHTRKRPLAPDVDLGVVAARTEGSSGADISGLC 606

Query: 227 RRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQ 262
               + A   + K    E     L+R+   +   DQ
Sbjct: 607 AVAVELAISGYEKAPECEP----LIRMCHFEQALDQ 638


>gi|307726327|ref|YP_003909540.1| AAA ATPase central domain-containing protein [Burkholderia sp.
           CCGE1003]
 gi|307586852|gb|ADN60249.1| AAA ATPase central domain protein [Burkholderia sp. CCGE1003]
          Length = 636

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 57/251 (22%), Positives = 95/251 (37%), Gaps = 26/251 (10%)

Query: 26  TLEEFTGQVEACSNL---KVFIEAAKA----RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
             ++  G  EA + L   + ++   K        A   +L VG PG+GKT LAQ +A E 
Sbjct: 188 RFDDVIGAGEAKAALADIRGYLSNPKQFTAMGVRAPCGILMVGGPGVGKTRLAQALAGEC 247

Query: 79  GVNFRSTSGP---------VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP-- 127
           G NF S +G           I K   L  +        V+FIDE   L+   +    P  
Sbjct: 248 GANFISITGSYFSAKYYGVGIQKVKHLFEMARKNAP-TVIFIDEADGLAKRTDTGGGPVE 306

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           A  +  ++ ++ E     S +       ++AAT     L   L+   RF   +++   + 
Sbjct: 307 AESNRIINQLLAEMDGFASNEG----VIIVAATNHPDNLDEALRRPGRFDRTVQVRLPDR 362

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRG-TPRIAGRLLRRVRDFAEVAHAKTITRE 244
           ED   I +  A+       D    ++A  + G +P     ++ +    A  A    I  +
Sbjct: 363 EDRAKIFRFYAEKLKAKAADIDYDQLARLTTGLSPATVAMVVNQAGLVARKAGDTEIAAK 422

Query: 245 IADAALLRLAI 255
               A+    I
Sbjct: 423 HFIEAIKIARI 433


>gi|152991151|ref|YP_001356873.1| cell division protein FtsH [Nitratiruptor sp. SB155-2]
 gi|151423012|dbj|BAF70516.1| cell division protein FtsH [Nitratiruptor sp. SB155-2]
          Length = 660

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 57/263 (21%), Positives = 92/263 (34%), Gaps = 21/263 (7%)

Query: 23  RPR-TLEEFTGQVE-------ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           RP+   ++  G  E           LK      +  A+    VL VGPPG GKT LA+ V
Sbjct: 178 RPKVKFDDVAGVEEAKEEVKEIVDFLKHPQRYIRLGAKIPKGVLLVGPPGTGKTLLAKAV 237

Query: 75  ARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILY 126
           A E  V F + SG       V   A  +  L    +     ++FIDEI  +         
Sbjct: 238 AGEADVPFFAVSGSSFIEMFVGVGAARVRDLFEQAKKEAPSIIFIDEIDAIGKSRAAAGP 297

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
               D +   +            + S   ++AAT R  +L   L    RF   + ++  +
Sbjct: 298 IGGNDEREQTLNQLLAEMDGFDSSESPVIVLAATNRPEVLDPALLRPGRFDRTVVVDKPD 357

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            E    I++    +  + ++     E   R       A  L   V + A +A  K   + 
Sbjct: 358 FEGRLAILK--VHVKHIKLSPNVDLEEIARLTAGLAGA-DLANIVNEAALLAGRKNKEQV 414

Query: 245 IADAALLRLAIDKMGFDQLDLRY 267
             +  L  +     G ++   R 
Sbjct: 415 EQEDLLEAVERAIAGLEKKSRRI 437


>gi|147902655|ref|NP_001082983.1| ATP-dependent metalloprotease YME1L1 [Danio rerio]
 gi|141796357|gb|AAI39530.1| Zgc:162158 protein [Danio rerio]
          Length = 722

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 53/230 (23%), Positives = 88/230 (38%), Gaps = 25/230 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T E   G  EA + L+  +E  +          +    +L VGPPG GKT LA+ VA E 
Sbjct: 286 TFEHVKGVEEAKNELQEVVEFLRNPQKFTVLGGKLPKGILLVGPPGTGKTLLARAVAGEA 345

Query: 79  GVNFRSTSGPVIA------KAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F   SG           A  +  L    +     V+FIDE+  +     E       
Sbjct: 346 DVPFYYASGSEFDEMFVGVGASRIRNLFREAKGNAPCVIFIDELDSVGGKRIESPMHPYS 405

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
              ++ ++ E    +  +       +I AT     L N L    RF + + +   +++  
Sbjct: 406 RQTINQLLAEMDGFKPNEG----VIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKGR 461

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
             I++   K   +     +A E  + +RGT   +G  L  + + A +  A
Sbjct: 462 TEILKWYLKKIKVD----SAVEAEVIARGTVGFSGAELENLVNQAALKAA 507


>gi|145475175|ref|XP_001423610.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124390671|emb|CAK56212.1| unnamed protein product [Paramecium tetraurelia]
          Length = 451

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 62/194 (31%), Gaps = 25/194 (12%)

Query: 15  EDADISLL-RPRTLEEFTGQVEACS--------NLK--VFIEAAKARAEALDHVLFVGPP 63
           E   I ++ RP    +  G               L+     E   A    L   L  GPP
Sbjct: 150 ESDIIEIMDRPTQWTDIVGLDHVRDQVVEIALWPLENPKLFEGIIAPGSGL---LLFGPP 206

Query: 64  GLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIH 115
           G GKT + + +A E    F S     +           + AL      R   V+F DEI 
Sbjct: 207 GTGKTMIGKAIASEGKATFFSIKASTLTSKYVGEGEKTVRALFALAAQRQPSVIFFDEID 266

Query: 116 RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
            L     E         + + MV    + R       R   I AT R   L + ++ RF 
Sbjct: 267 SLLCARSEKDNETSRQIKTEFMVQLEGATRGGC---ERIVFIGATNRPQELDDAIKRRFQ 323

Query: 176 IPIRLNFYEIEDLK 189
             I +     E  +
Sbjct: 324 KKIYIPLPNKEGRQ 337


>gi|323357528|ref|YP_004223924.1| ATP-dependent Zn protease [Microbacterium testaceum StLB037]
 gi|323273899|dbj|BAJ74044.1| ATP-dependent Zn protease [Microbacterium testaceum StLB037]
          Length = 670

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 65/250 (26%), Positives = 100/250 (40%), Gaps = 35/250 (14%)

Query: 26  TLEEFTGQVEACSNL---KVFIEAAKARAE----ALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  EA   L   K F++  K   E        VL  GPPG GKT LA+ VA E 
Sbjct: 165 TFQDVAGSDEAIEELDEIKEFLKDPKKFEEVGARIPKGVLLYGPPGTGKTLLARAVAGEA 224

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG       V   A  +  L    ++    ++FIDEI  +       +    +
Sbjct: 225 GVPFYSISGSDFVEMFVGVGASRVRDLFNQAKESSPAIIFIDEIDAVGRHRGAGMGGGHD 284

Query: 131 DFQLDL------MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNF 182
           + +  L      M G  P    + I        AAT R  +L   L    RF   I ++ 
Sbjct: 285 EREQTLNQMLVEMDGFDPKVNVIVI--------AATNRPDILDPALLRPGRFDRQIGVDA 336

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            +++      QR  ++ G       + ++ + +R TP   G  L  V + A +  A++  
Sbjct: 337 PDLKGR----QRILEVHGRGKPLSDSVDLEVVARKTPGFTGADLANVLNEAALLTARSNA 392

Query: 243 REIADAALLR 252
           + I + AL  
Sbjct: 393 QLIDNRALDE 402


>gi|291234269|ref|XP_002737071.1| PREDICTED: valosin-containing protein-like [Saccoglossus
           kowalevskii]
          Length = 906

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 46/203 (22%), Positives = 78/203 (38%), Gaps = 20/203 (9%)

Query: 32  GQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARELGVNFR 83
           G  +    L+  +E      E  +         VL  GPPG GKT +A+ +A E    F 
Sbjct: 372 GLSKQLEILREMVELPLRSPEVFESLGIVPPRGVLLYGPPGTGKTLIAKAIANETKAYFT 431

Query: 84  STSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
           + +GP +           L  +    E +   V+FIDEI  L     E ++  +E   + 
Sbjct: 432 TINGPEVLSKFYGETESKLREIFKESERQAPAVIFIDEIDALCPKR-ENVHSELEKRIVA 490

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQ 193
            ++       S   +     ++ AT R   +   L+   RF   I ++   ++D K I+Q
Sbjct: 491 TLLTL-MDGMSSGNSTGHVIVLGATNRPDSIDTALRRPGRFDRDIEISIPNMKDRKDILQ 549

Query: 194 RGAKLTGLAVTDEAACEIAMRSR 216
           +        +TD     IA  + 
Sbjct: 550 KLLLHMPHDLTDLDIDSIAESAH 572



 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 50/286 (17%), Positives = 98/286 (34%), Gaps = 36/286 (12%)

Query: 15  EDADISLLR------PRTL-EEFTGQVEACSNLKVFIE--------AAKARAEALDHVLF 59
           ++   S +R      P+ L  +  GQ      L+  +E          +   E    VL 
Sbjct: 620 KEIKPSAMREITIDVPKVLWTDIGGQAIIKQKLRQAVEWPLRHPEVFHRMGIEPPQGVLL 679

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLAALLTNLEDR------DVLFI 111
            GPPG  KT + + +A E  +NF +  GP +     G+    +  +  +       ++F 
Sbjct: 680 YGPPGCSKTMIVKALATETQLNFIAVKGPELFSKWVGESERAVREVFRKARAASPAIVFF 739

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DEI  L+         +      D ++ +  +       L+  T++AAT R  ++   L 
Sbjct: 740 DEIDALASSRGGS---SGSGQVTDRVLAQLLTELDGIEKLTDVTIVAATNRPDVIDKALL 796

Query: 172 D--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
              R    + +   + +  + I+Q   +   +         +      T R +G  +  V
Sbjct: 797 RPGRIDRILYVPLPDEQTRREILQIQFRKMPIGSDVS----LESLVGNTGRYSGAEVVAV 852

Query: 230 RDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNF 275
              A +A      +E   A  +     K     +  R    +   +
Sbjct: 853 CHEAALA----AMQEDIHAEFIMERHFKQALLAVTPRITEDLIEFY 894


>gi|224047638|ref|XP_002192184.1| PREDICTED: spastin isoform 2 [Taeniopygia guttata]
          Length = 580

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 48/237 (20%), Positives = 85/237 (35%), Gaps = 21/237 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDHV-------LFVGPPGLGKTTLAQVVAREL 78
             ++  GQ  A   L+  +     R E    +       L  GPPG GKT LA+ VA E 
Sbjct: 304 KFDDIAGQELAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES 363

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAME 130
              F + S   +           + AL     +    ++FIDE+  L     E  + A  
Sbjct: 364 NATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLCERREGEHDASR 423

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
             + + ++       S +    R  ++ AT R   L + +  RF   + ++    E    
Sbjct: 424 RLKTEFLIEFDGVQSSGE---DRILVMGATNRPQELDDAVLRRFTKRVYVSLPNEETRLI 480

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           +++    L     +     E+A  +R T   +G  L  +   A +   + +  E   
Sbjct: 481 LLK---NLLSKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVK 534


>gi|145259126|ref|XP_001402275.1| cell division control protein 48 [Aspergillus niger CBS 513.88]
 gi|134074895|emb|CAK39004.1| unnamed protein product [Aspergillus niger]
          Length = 820

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 47/258 (18%), Positives = 85/258 (32%), Gaps = 17/258 (6%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLED 105
           +    +L  GPPG GKT +A+ VA E G  F   +GP I          +L       E 
Sbjct: 254 KPPRGILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEK 313

Query: 106 RD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
               ++FIDEI  ++   E+             +V +  +        S   ++AAT R 
Sbjct: 314 NSPAIIFIDEIDSIAPKREK-----TNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRP 368

Query: 164 GLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRI 221
             +   L+   RF   + +   +      I+    K   L    +     A         
Sbjct: 369 NSIDPALRRFGRFDREVDIGIPDPTGRLEILSIHTKNMKLGDDVDLETIAAETHGYVGSD 428

Query: 222 AGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVG 281
              L        +    K    ++ +  +    +D +G    + RY   ++       V 
Sbjct: 429 LASLCSEAAM--QQIREKMDLIDLDEDTIDAEVLDSLGVTMENFRYALGVSNPSALREVA 486

Query: 282 IETISAGLSEPRDAIEDL 299
           +  +     E    +E++
Sbjct: 487 VVEVPNVRWEDIGGLEEV 504



 Score = 50.5 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 62/158 (39%), Gaps = 12/158 (7%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--V 108
           VLF GPPG GKT LA+ VA E   NF S  GP +          ++  +          V
Sbjct: 533 VLFYGPPGTGKTMLAKAVANECAANFISVKGPELLSMWFGESESNIRDIFDKARAAAPCV 592

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +F+DE+  ++      +  A      D +V +  +      +     +I AT R   L  
Sbjct: 593 VFLDELDSIAKSRGGSVGDA--GGASDRVVNQLLTEMDGMTSKKNVFVIGATNRPEQLDA 650

Query: 169 PLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVT 204
            L    R    + +   +    ++I++   + T +A  
Sbjct: 651 ALVRPGRLDTLVYVPLPDQASRESILKAQLRKTPIAGD 688


>gi|72111462|ref|XP_790164.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115951765|ref|XP_001175913.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 889

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 50/235 (21%), Positives = 88/235 (37%), Gaps = 35/235 (14%)

Query: 2   MDREGLLSRNVSQEDADI-------SLLR------PR-TLEEFTGQVEACSNLKVFIEAA 47
           M+   + S +V++ED          S LR      P+    +  GQ      L+  +E  
Sbjct: 583 MNASHIASGSVTKEDFLHAMAQVKPSALREVEIDIPKVYWSDIGGQESIKLKLRQAVEWP 642

Query: 48  KARAEALD--------HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLA 97
               EA           VL  GPPG  KT +A+ +A E G+NF S  GP +     GD  
Sbjct: 643 IKHPEAFARLGVSPPRGVLLYGPPGCSKTLIAKALATESGLNFISVKGPELFSKWVGDSE 702

Query: 98  ALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINL 151
             +  +  +       ++F DEI  +++   E    +      D ++G+  +       L
Sbjct: 703 RAVREVFRKARSAAPAIVFFDEIDGIAV---ERGSSSGSSNVGDRLLGQLLTELDGVECL 759

Query: 152 SRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVT 204
               ++AAT R  ++   L    R    + ++  +    K I+    +   +   
Sbjct: 760 RDVVVVAATNRPDMIDKALMRPGRLDRILYVSLPDDHTRKEILNIQFRKMPIDGD 814



 Score = 44.7 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 49/237 (20%), Positives = 86/237 (36%), Gaps = 32/237 (13%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DV 108
           VL  GPPG+GKT LA+ VA E  V+    + P +           L AL          +
Sbjct: 385 VLLYGPPGVGKTMLARAVALESRVHIVVINMPEVLSKFYGESESRLRALFDEAAQNAPSL 444

Query: 109 LFIDEIHRLSIIVE---EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
           + IDE+  L    E         +    + LM G G +  S +  L    ++ AT R   
Sbjct: 445 ILIDELDALCPRRERVNSESEKRVVSMLISLMDGMGQNTSSGRHVL----VLGATARPDS 500

Query: 166 LTNPLQD--RFGIPIRLNFYEIEDLKTIVQR---------GAKLTGLAVTDEAACEIAMR 214
           +   L+   RF   I +      + + I+++          A+   L          A  
Sbjct: 501 IDTALRRPGRFDHEIEIGVPNARERRQILEKLTGSISHSLTAEDLTLISDSAHGYVGADL 560

Query: 215 SRGTPRIAGRLLRRVRDFAEV------AHAKTITREIADAALLRLAIDKMGFDQLDL 265
           +      A R   R+R   +         + ++T+E    A+ ++    +   ++D+
Sbjct: 561 TAVCKEAAMRTFERLRALTQEPMNASHIASGSVTKEDFLHAMAQVKPSALREVEIDI 617


>gi|315635707|ref|ZP_07890970.1| DNA polymerase III, gamma/tau subunit DnaX [Arcobacter butzleri
           JV22]
 gi|315480004|gb|EFU70674.1| DNA polymerase III, gamma/tau subunit DnaX [Arcobacter butzleri
           JV22]
          Length = 644

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 71/201 (35%), Gaps = 43/201 (21%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLG 66
           +++ + ++       RP+  E+  GQ      L + +++ +     L H  LF G  G G
Sbjct: 1   MNKEILEDRVLALKYRPKRFEDLIGQSTISQTLSLALDSNR-----LSHAYLFSGLRGSG 55

Query: 67  KTTLAQVVARE------------------------LGVNFRSTSGPVIAKAGDLAALLTN 102
           KT+ A+++A+                           ++             D+  L+ +
Sbjct: 56  KTSTARIMAKALLCSQGPTSKPCDICDNCKSANASKHLDIIEMDAASNRGIDDIKDLIEH 115

Query: 103 LEDRD------VLFIDEIHRLSIIVEEILYPAMED--FQLDLMVGEGPSARSVKINLS-- 152
            + +       V  IDE+H L+      L   +E+    +  ++      +     LS  
Sbjct: 116 TKYKPSSARFKVFIIDEVHMLTTQAFNALLKTLEEPPGFVKFILATTDPLKLPATILSRT 175

Query: 153 ---RFTLIAATTRVGLLTNPL 170
              RF  IA +  V  L+  L
Sbjct: 176 QHFRFNKIAQSDVVHHLSYIL 196


>gi|114330605|ref|YP_746827.1| DNA polymerase III, subunits gamma and tau [Nitrosomonas eutropha
           C91]
 gi|114307619|gb|ABI58862.1| DNA polymerase III, subunits gamma and tau [Nitrosomonas eutropha
           C91]
          Length = 527

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 51/287 (17%), Positives = 91/287 (31%), Gaps = 42/287 (14%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+      GQ       +  + + +     L H  LF G  G+GKTT+A+++A+ L   
Sbjct: 12  RPKDFTGLVGQEHVV---RALVNSMEQ--NRLHHAYLFTGTRGVGKTTVARILAKALNCE 66

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILY------PAMEDFQ 133
                G      G  AA L   +    D++ +D      +     L       P    ++
Sbjct: 67  ----QGVTATPCGKCAACLAIDQGNFVDLIELDAASNTQVDAMRELLDNAQYAPVTARYK 122

Query: 134 LDLM--------VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           + L+               ++++        I ATT    +   +  R            
Sbjct: 123 VYLIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQI--- 179

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTP---RIAGRLLRRVRDFAEVAHAKTIT 242
                IV R +++  +      A  + + ++      R A  LL    D A      T+ 
Sbjct: 180 -PPSLIVTRLSEILSMERIVADATALKLLAKAAKGSLRDALSLL----DQAIALGNATVD 234

Query: 243 REIADAALLRLAIDKM-----GFDQLDLRYLTMIARNFGGGPVGIET 284
            +     L  L  D +        + D   L  IA       V  ++
Sbjct: 235 EKNTRVMLGALDQDHLFALLEALAEQDGAALLAIADQLEAASVSFDS 281


>gi|326530674|dbj|BAK01135.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1088

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 81/222 (36%), Gaps = 16/222 (7%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFR 83
           PRT ++  GQ      L   I     + +     +F GP G GKT+ A+V A+ L  +  
Sbjct: 351 PRTFKDVVGQSLVVQALSNAI----LKRKIGSVYVFYGPHGTGKTSCARVFAKALNCHSP 406

Query: 84  STSGPVIAKAG----DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
               P    A     +L    + +E   V  ID    + I+   IL P     ++ ++  
Sbjct: 407 EHPKPCDTCASCIAHNLGKSRSLMEIGPVGNIDLDSIVDILDNVILSPLPAHHRVFIVDD 466

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-------RFGIPIRLNFYEIEDLKTIV 192
                      +S+    A    V +L +P  D       R          E + + T +
Sbjct: 467 CNTLPPDTWSVISKVVERAPRRVVFVLISPNLDLPHIIMSRCQKFFFPKLKECDIVNT-L 525

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
           Q      GL V  +A   IA RS G+ R A   L ++    +
Sbjct: 526 QWICTSDGLDVDRDALKLIASRSDGSLRDAEMTLDQLSLLGQ 567


>gi|194246798|ref|YP_002004437.1| putative ATP-dependent Zn protease [Candidatus Phytoplasma mali]
 gi|193807155|emb|CAP18593.1| putative ATP-dependent Zn protease [Candidatus Phytoplasma mali]
          Length = 414

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 73/199 (36%), Gaps = 17/199 (8%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK---------AGDL---AAL 99
           +    +L  G PG GKTTLA+ VA+E  + F   S  + ++           DL   A +
Sbjct: 157 DPPFGILLYGVPGTGKTTLARAVAKETKLPFFEISSSMFSQKYRGIAPQMVKDLFAIARV 216

Query: 100 LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA 159
           +   +   ++F+DE   + + +      A  +    +   +               +I A
Sbjct: 217 VAEEKGGAIIFLDECETIFVNINN--LEANSEVANVVNAFKTEMTSIDNNPNKPIFVIGA 274

Query: 160 TTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEA---ACEIAMRSR 216
           T  +  L   ++ RF   I +  +E ++ +  ++          +DE+     E+   + 
Sbjct: 275 TNHIDQLEEAIKSRFTYNIEVKPFERKERQEFLEFMINRRKNPYSDESKKYLFEVINVAL 334

Query: 217 GTPRIAGRLLRRVRDFAEV 235
              +     L+  R    +
Sbjct: 335 DDYQGENSFLKSNRTLENI 353


>gi|158338030|ref|YP_001519206.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris
           marina MBIC11017]
 gi|158308271|gb|ABW29888.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris
           marina MBIC11017]
          Length = 631

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 53/263 (20%), Positives = 94/263 (35%), Gaps = 27/263 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  E+ + L+  +E  K+        A+    VL VGPPG GKT +A+ VA E 
Sbjct: 168 TFDDVAGVEESKTELEEIVEFLKSPQRFTEIGAKIPKGVLLVGPPGTGKTLMAKAVAGEA 227

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVE--EILYPA 128
           GV F S SG           A  +  L    + +   ++FIDE+  +             
Sbjct: 228 GVPFFSISGSEFVELFVGTGAARVRDLFEQAKKKAPCIIFIDELDAIGKSRAGGNGFVGG 287

Query: 129 MEDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
            ++ +  L  ++ E     +         ++AAT R   L   L    RF   + ++  +
Sbjct: 288 NDEREQTLNQLLTEMDGFGAGDAT---VIVLAATNRPETLDPALLRPGRFDRQVLVDRPD 344

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +     I++  AK   L    +                  L+      A    +K +  +
Sbjct: 345 LSGRLAILEIYAKKVKLGDNVDLKAMATRTPGFAGADLANLVNEAALLAARRDSKVVETQ 404

Query: 245 IADAALLRLAIDKMGFDQLDLRY 267
               A+ R+     G ++     
Sbjct: 405 DFAEAIERVVA---GLEKKSRVL 424


>gi|76802633|ref|YP_330728.1| AAA-type ATPase (transitional ATPase homolog) [Natronomonas
           pharaonis DSM 2160]
 gi|76558498|emb|CAI50090.1| AAA-type ATPase (transitional ATPase homolog) [Natronomonas
           pharaonis DSM 2160]
          Length = 759

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 63/261 (24%), Positives = 88/261 (33%), Gaps = 40/261 (15%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
           T E+  G       ++  IE      E            VL  GPPG GKT +A+ VA E
Sbjct: 194 TYEDIGGLDSELEQVREMIELPMRHPELFQQLGIEPPKGVLLHGPPGTGKTLMAKAVANE 253

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM 129
           +  +F   SGP I           L  +     +    ++FIDEI  ++    E      
Sbjct: 254 IDAHFTDISGPEIMSKYYGESEEQLREVFDEASENAPAIVFIDEIDSIAPKRGETSGDVE 313

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                  +V +  S            +I AT RV  +   L+   RF   I +   + E 
Sbjct: 314 RR-----VVAQLLSLMDGLEERGDVIVIGATNRVDAIDPALRRGGRFDREIEIGVPDKEG 368

Query: 188 LKTIVQ---RGAKL-----TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR--------- 230
            K I+Q   RG  L           +      A     T   A   LRR+R         
Sbjct: 369 RKEILQVHTRGMPLADGIDLEQYAENTHGFVGADLESLTKEAAMNSLRRIRPELDLEQDE 428

Query: 231 DFAEVAHAKTITREIADAALL 251
             AEV  + T+T      AL 
Sbjct: 429 IEAEVLESMTVTESDFKDALK 449



 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 75/222 (33%), Gaps = 27/222 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DV 108
           VL  GPPG GKT +A+ +A E   NF S  GP +           +  +          V
Sbjct: 506 VLLYGPPGTGKTLMAKAIANEAQSNFISIKGPELLNKYVGESEKGVREVFEKARSNAPTV 565

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +F DEI  ++    E +         + +V +  +       L    +IA T R  L+ +
Sbjct: 566 VFFDEIDSIAGERGERMGD---SGVGERVVSQLLTELDGLEELEDVVVIATTNRPDLIDS 622

Query: 169 PL-----QDRFGIPIRLNFYEIEDLKTIVQR---------GAKLTGLAVTDEAACEIAMR 214
            L      DR       +    E +  +  R          ++L G       A   A+ 
Sbjct: 623 ALLRPGRLDRHIHVPVPDEEAREAIFAVHTRNKPLADDVDISELAGRTDGYVGADIEAVC 682

Query: 215 SRGTPRIAGRLLRRV--RDFAEVAHAKTITREIADAALLRLA 254
              +       +  V   + A+      IT E  + AL  + 
Sbjct: 683 REASMAATREFIESVSPEEAAQSVGNVRITAEHFEEALDEVG 724


>gi|11265361|pir||T48355 transitional endoplasmic reticulum ATPase - Arabidopsis thaliana
 gi|7378614|emb|CAB83290.1| transitional endoplasmic reticulum ATPase [Arabidopsis thaliana]
          Length = 843

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 52/270 (19%), Positives = 89/270 (32%), Gaps = 43/270 (15%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------------VLFVGPPGLGKTTLA 71
            L+E  G  +     K   +  +     L H              +L  GPPG GKT +A
Sbjct: 233 RLDE-VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIA 291

Query: 72  QVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEE 123
           + VA E G  F   +GP I          +L       E     ++FIDEI  ++   E+
Sbjct: 292 RAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREK 351

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
                        +V +  +      + +   ++ AT R   +   L+ RFG        
Sbjct: 352 -----TNGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALR-RFG--RFDREI 403

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV-RDFAEVAHAKTIT 242
           +I     I +   ++  +   +    E         RI+      V  D A +      T
Sbjct: 404 DIGVPDEIGR--LEVLRIHTKNMKLAEDV----DLERISKDTHGYVGADLAAL-----CT 452

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIA 272
                    ++ +  +  D +D   L  +A
Sbjct: 453 EAALQCIREKMDVIDLEDDSIDAEILNSMA 482



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 55/294 (18%), Positives = 96/294 (32%), Gaps = 39/294 (13%)

Query: 2   MDREGLLSRNVSQE-------DADISLLR------PR-TLEEFTGQVEACSNLKVFIEAA 47
           +D E L S  VS E       +++ S LR      P  + E+  G       L+  ++  
Sbjct: 473 IDAEILNSMAVSNEHFHTALGNSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYP 532

Query: 48  KARAEAL--------DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKA 93
               E            VLF GPPG GKT LA+ +A E   NF S  GP +         
Sbjct: 533 VEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESE 592

Query: 94  GDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINL 151
            ++  +          VLF DE+  ++         A      D ++ +  +        
Sbjct: 593 ANVREIFDKARQSAPCVLFFDELDSIATQRGNSAGDA--GGAADRVLNQLLTEMDGMNAK 650

Query: 152 SRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAAC 209
               +I AT R  ++ + L    R    I +   + +    I +   + + +A   +   
Sbjct: 651 KTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDEDSRLNIFKACLRKSPVAKDVDVTA 710

Query: 210 EIAMRSRGTPRIAGRLLRRVRDFAEVAH-----AKTITREIADAALLRLAIDKM 258
                   +      + +R   +A   +          R     A+    +D  
Sbjct: 711 LAKYTQGFSGADITEICQRACKYAIRENIEKDIENERRRSQNPEAMEEDMVDDE 764


>gi|313125920|ref|YP_004036190.1| ATPase AAA [Halogeometricum borinquense DSM 11551]
 gi|312292285|gb|ADQ66745.1| AAA family ATPase, CDC48 subfamily [Halogeometricum borinquense DSM
           11551]
          Length = 754

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 50/189 (26%), Positives = 70/189 (37%), Gaps = 29/189 (15%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
           T E+  G       ++  IE      E            VL  GPPG GKT +A+ VA E
Sbjct: 188 TYEDIGGLDRELEQVREMIELPMRHPELFKRLGIDPPKGVLLHGPPGTGKTLIAKAVANE 247

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM 129
           +  +F + SGP I           L  +  + E+    ++FIDEI  ++    E      
Sbjct: 248 IDASFHTISGPEIMSKYYGESEEQLREIFEDAEENAPAIVFIDEIDSIAPKRGEAGGDVE 307

Query: 130 ED---FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
                  L LM G       V I         AT RV  +   L+   RF   I +   +
Sbjct: 308 RRVVAQLLSLMDGLDERGEVVVI--------GATNRVDAIDPALRRGGRFDREIEIGVPD 359

Query: 185 IEDLKTIVQ 193
            E  K I+Q
Sbjct: 360 KEGRKEILQ 368



 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 8/69 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DV 108
           VL  GPPG GKT LA+ VA E   NF S  GP +           +  +     +    V
Sbjct: 500 VLLYGPPGTGKTLLAKAVANEADSNFISVKGPELLNKYVGESEKGVREIFKKARENAPTV 559

Query: 109 LFIDEIHRL 117
           +F DEI  +
Sbjct: 560 VFFDEIDSI 568


>gi|242767242|ref|XP_002341331.1| AAA family ATPase/60S ribosome export protein Rix7, putative
           [Talaromyces stipitatus ATCC 10500]
 gi|218724527|gb|EED23944.1| AAA family ATPase/60S ribosome export protein Rix7, putative
           [Talaromyces stipitatus ATCC 10500]
          Length = 740

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 58/277 (20%), Positives = 91/277 (32%), Gaps = 21/277 (7%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
           +L +  G  E    L   I     R +            VL  GPPG GKT LA   A +
Sbjct: 172 SLSDLGGMDEVLQELGDLIILPMTRPQIFTSSKVQPPRGVLLHGPPGCGKTMLANAFAAD 231

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
           LGV F S S P +           L       +     ++FIDEI  ++    E     M
Sbjct: 232 LGVPFISISAPSVVSGMSGESEKALREHFDEAKKVAPCLIFIDEIDAITPKR-ESAQREM 290

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
           E   +  ++         K N     ++AAT R   L   L+   RF   I L       
Sbjct: 291 EKRIVAQLLTCMDDLALEKTNGKPVIVLAATNRPDSLDPALRRGGRFDKEINLTVPSEPV 350

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            + I+ R          D     +A R+ G        L      A +     + +    
Sbjct: 351 REQIL-RTLTRKMQLADDLDFQTLAKRTAGFVGADLNDLVSTAGAAAIKRYLELLKANTG 409

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIET 284
             +      +    +  ++ +  + ++    P+G ET
Sbjct: 410 EEMDIEGETEQDLTEK-VKEIRRLIKHAKEAPMGQET 445



 Score = 52.0 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 49/218 (22%), Positives = 79/218 (36%), Gaps = 15/218 (6%)

Query: 47  AKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLE 104
           AK    A   VL  GPPG GKT LA+ VA E   NF S  GP +     G+    +  + 
Sbjct: 507 AKVGITAPTGVLLWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESERAVRQVF 566

Query: 105 DRD------VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIA 158
            R       V+F DE+  L    ++ L  +       L+        + +       +IA
Sbjct: 567 VRARSSIPCVIFFDELDALVPRRDDALSESSARVVNTLLTELDGLGSNRQG----IYIIA 622

Query: 159 ATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSR 216
           AT R  ++   +    R    + +N     +   I++   +   +   D+          
Sbjct: 623 ATNRPDIIDPAMLRPGRLETLLFVNLPGPSERAEILETLVRNLPIEFNDQMRTLAESCEG 682

Query: 217 GTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            +    G LLRR   ++ +     I  E   AA   + 
Sbjct: 683 YSGADIGSLLRRA-GYSAIKRRDMIRFEDFVAAKEHIR 719


>gi|167044405|gb|ABZ09082.1| putative ATPase family associated with various cellular activities
           (AAA) [uncultured marine crenarchaeote HF4000_APKG6D3]
          Length = 386

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 76/188 (40%), Gaps = 13/188 (6%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
                RP+   +  G  E+    K+F+E      +    +L VGPPG+GKTTLA + A++
Sbjct: 3   WSEKYRPKNFLDLIGNEESR---KLFVEWFTNWKKGTRPILLVGPPGIGKTTLANLAAKQ 59

Query: 78  LGVNFRSTSGPVIAKAGDLAALLT-NLEDRDV-----LFIDEIHRLSIIVE----EILYP 127
            G +  S +   +    ++  +L+  L ++ V     +FIDE+  +    +    E +  
Sbjct: 60  FGYDLISLNASDVRNKQNIHEILSPVLGNQTVLGTPMIFIDEVDGVHGRADYGGTEAIIK 119

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
            +++  + +++     +     ++ +         +      L     + +     + + 
Sbjct: 120 ILKEPTVPIVLAANTDSSDKMKSIKKVVKTIEMKPLSPKLLRLCLNRILQLEGVKIDSDS 179

Query: 188 LKTIVQRG 195
           L  +V + 
Sbjct: 180 LAKLVTKS 187


>gi|1848291|gb|AAB48000.1| LON protease homolog [Arabidopsis thaliana]
          Length = 941

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 52/272 (19%), Positives = 93/272 (34%), Gaps = 42/272 (15%)

Query: 11  NVSQEDADISLLRPRTL--EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGK 67
           N S E+ D++  R +T+  E+  G  +    +  FI   + R  +   ++   GPPG+GK
Sbjct: 413 NYSNENFDVA--RAQTILDEDHYGLSDVKERILEFIAVGRLRGTSQGKIICLSGPPGVGK 470

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED----------------RDVLFI 111
           T++ + +AR L   F   S   +A   ++                           ++ I
Sbjct: 471 TSIGRSIARALNRKFFRFSVGGLADVAEIQGHRRTYVGAMPGKMVQCLKSVGTANPLVLI 530

Query: 112 DEIHRLSI--------IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
           DEI +L           + E+L P      LD           V I+LS+   +     +
Sbjct: 531 DEIDKLGRGHAGDPASALLELLDPEQNANFLD-------HYLDVTIDLSKVLFVCTANVI 583

Query: 164 GLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAG 223
            ++ NPL DR  +     +   E +       A+                +   +     
Sbjct: 584 DMIPNPLLDRMEVISIAGYITDEKVH-----IARDYLEKTARGDCGVKPEQVEVSDAALL 638

Query: 224 RLLRRVRDFAEVAH-AKTITREIADAALLRLA 254
            L+      A V +  K I +     AL  + 
Sbjct: 639 SLIENYCREAGVRNLQKQIEKIYRKIALKLVR 670


>gi|87122720|ref|ZP_01078595.1| DNA polymerase III subunits gamma and tau [Marinomonas sp. MED121]
 gi|86162017|gb|EAQ63307.1| DNA polymerase III subunits gamma and tau [Marinomonas sp. MED121]
          Length = 823

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 50/252 (19%), Positives = 80/252 (31%), Gaps = 56/252 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+   E  GQ      L+  + A K +   L H  LF G  G+GKTT+A++ A+ L   
Sbjct: 11  RPQNFIELAGQDHV---LQALVNALKQQ--RLHHAYLFTGTRGVGKTTIARIFAKCLNCE 65

Query: 82  FRSTS-------------------------GPVIAKAGDLAALLTNLE------DRDVLF 110
               S                              K  D   LL N++         V  
Sbjct: 66  TNGISPEPCGTCGSCVEIAEGRFVDLIEVDAASRTKVEDTRELLENVQYTPTRGRFKVYL 125

Query: 111 IDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           IDE+H LS      L   +E+                    +    + ATT    L   +
Sbjct: 126 IDEVHMLSTHSFNALLKTLEE------------------PPAHVKFLLATTDPQKLPVTI 167

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
             R  +   L       +   +++      L+  +    +I   + G+ R A  L  +  
Sbjct: 168 LSRC-LQFNLKNMSPGRVVNYLEKVLTTEQLSYDEAGLWQIGQAANGSMRDALSLTDQAI 226

Query: 231 DFAEVAHAKTIT 242
            F     ++T  
Sbjct: 227 AFGNGHISETDV 238


>gi|332797881|ref|YP_004459381.1| AAA ATPase [Acidianus hospitalis W1]
 gi|332695616|gb|AEE95083.1| AAA ATPase, CDC48 subfamily [Acidianus hospitalis W1]
          Length = 605

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 83/221 (37%), Gaps = 23/221 (10%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLT 101
           + R   +  +L  GPPG+GKT +A+ +A+ L V   S S   I           L  +  
Sbjct: 373 QMRVPPIRGILLYGPPGVGKTMMAKALAKTLDVKLISVSVAEIMYKGYEGAVSILKEVFN 432

Query: 102 NLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA 159
              +    ++ +DE+  ++    +      +      +V +  +      NL    +I  
Sbjct: 433 RARENKPSIILLDELDAIASKRSQK-----DSTDSSKIVNQLLTEMDGIRNLKEVVVIGT 487

Query: 160 TTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRG 217
           T RV  +   L    RF I + ++    E+   I+Q+          D    EIA R+ G
Sbjct: 488 TNRVKTIDPALLRPGRFDIIVHMDLPNEEERLDILQKYIGKDVCERVDC--REIAKRTEG 545

Query: 218 TPRIAGRL------LRRVRDFAEVAHAKTITREIADAALLR 252
                         +R ++D       + IT+E  + AL +
Sbjct: 546 YTGADLAAVAREAKIRVLKDIIRGNKDRVITKEDIEIALNK 586



 Score = 46.6 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 51/254 (20%), Positives = 80/254 (31%), Gaps = 28/254 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIE--------AAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +  +  G  +    +  ++E        A K        +L  GPPG GKT + + +A +
Sbjct: 59  SWNDIGGYEDVKKEIIEYVEFPLKNKELALKYGLRPPKGILLFGPPGCGKTLMMRALASD 118

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
             +NF   +   I           L  L  N       +LF DEI  +    E     ++
Sbjct: 119 AKLNFIYVNVSDIMSKWYGESEARLRELFANARKNAPCLLFFDEIDTIGTKRESHTGDSV 178

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
               L LM+ E     S         ++ +T    LL   L    RF   I +     E 
Sbjct: 179 TPRLLSLMLSEIDGLNSEDG----VIIVGSTNVPQLLDKALLRAGRFDKLIYVGPPNKEA 234

Query: 188 LKTIVQRGAKLTGLAVT---DEAACEIAMRSRGTPRIAGRLLRRVRDFA-EVAHAKTITR 243
            K I++   K   LA     D+ A      S     +A       R  A E        +
Sbjct: 235 RKEILKIHCKNKPLAEDVDLDKIADMTERYSGAD--LANICQEAARKAAIEAMQTGKDVK 292

Query: 244 EIADAALLRLAIDK 257
                 +  +   K
Sbjct: 293 ISMKDFMEIIQRYK 306


>gi|209880093|ref|XP_002141486.1| replication factor C, subunit 5 [Cryptosporidium muris RN66]
 gi|209557092|gb|EEA07137.1| replication factor C, subunit 5, putative [Cryptosporidium muris
           RN66]
          Length = 371

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 39/233 (16%), Positives = 74/233 (31%), Gaps = 31/233 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP +LEE     +    +  FI + +     L H+LF GPPG GKT+    +++
Sbjct: 8   PWVEKYRPESLEELISHKDIIGTIGKFINSGQ-----LPHLLFHGPPGTGKTSTIHALSK 62

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
                 +     +   A D   +  N+    +    E    ++   E +    E    +L
Sbjct: 63  -FIYGEKKKQMVLELNASDDRGI--NVVRDAIKSFAESASTNMDCFEDIQTRGESGTTNL 119

Query: 137 MVGEGPSARSVKINL----------------------SRFTLIAATTRVGLLTNPLQDRF 174
           +           I L                                 V  +   LQ R 
Sbjct: 120 IFNRNFWRNVKLIILDEADMMTPVAQMALRRILEKYSEHVRFCIICNYVNKIIPALQSRC 179

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
               R +   I +++  +   +K  G+  + +    +   +RG  R    +L+
Sbjct: 180 -TRFRFSPLSINEMENKILVISKAEGIYTSKDGITALIEAARGDMRKVLNILQ 231


>gi|109899794|ref|YP_663049.1| ATPase [Pseudoalteromonas atlantica T6c]
 gi|109702075|gb|ABG41995.1| ATPase associated with various cellular activities, AAA_3
           [Pseudoalteromonas atlantica T6c]
          Length = 356

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 79/229 (34%), Gaps = 38/229 (16%)

Query: 30  FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTS--- 86
             GQ E    L V + A         H L  G PGL KT +   +A+ L ++++      
Sbjct: 40  IVGQREVVQQLLVAMLAG-------GHCLLEGAPGLAKTLMVSSLAKTLELDYKRIQFTP 92

Query: 87  ---------GPVIAKAGDLAALLTNLEDRD----VLFIDEIHRLSIIVEEILYPAMEDFQ 133
                      ++    D        +       +L  DEI+R     +  L  AM++  
Sbjct: 93  DLMPSDIIGTEILETDHDSGERFFKFKQGPVFTNILLADEINRTPPKTQAALLEAMQERT 152

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGL-----LTNPLQDRFGIPIRLNFYEIEDL 188
           +         A S+      F ++A    V       L     DRF + +R+ +   E+ 
Sbjct: 153 IS-------YAGSIYPLPKPFFVLATQNPVEQSGTYALPEAQLDRFLMFVRVGYPSAEEE 205

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPR---IAGRLLRRVRDFAE 234
             I+ R      + + +    +  +  +G  R   I+G LL  + +   
Sbjct: 206 VEILARTTGTQQVTLNEVLHTQDILTLQGLVRQVDISGELLTYISELTR 254


>gi|119178672|ref|XP_001240981.1| hypothetical protein CIMG_08144 [Coccidioides immitis RS]
          Length = 1063

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 71/192 (36%), Gaps = 33/192 (17%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI   K R      +L FVGPPG+GKT++ + +AR L   +   S
Sbjct: 539 EDHYGLKDVKDRILEFIAVGKLRGTVEGKILCFVGPPGVGKTSIGKSIARALNRQYYRFS 598

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ ++    +        
Sbjct: 599 VGGLTDVAEIKGHRRTYVGALPGRIIQALKKCQTENPLILIDEVDKIGRGHQGDPSSALL 658

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V ++LS+   +        +  PL DR  I I L+ 
Sbjct: 659 ELLDPEQNSSFLD-------HYMDVPVDLSKVLFVCTANMTDTIPRPLLDRMEI-IELSG 710

Query: 183 YEIEDLKTIVQR 194
           Y  ++   I +R
Sbjct: 711 YVADEKMAIAER 722


>gi|316973978|gb|EFV57519.1| replication factor C subunit 5 [Trichinella spiralis]
          Length = 340

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 43/121 (35%), Gaps = 19/121 (15%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +   RP  LEE     +    +  FI         L H+LF GPPG GKT+     A++L
Sbjct: 5   VEKYRPSKLEELISHKDILETIGRFI-----NENRLPHLLFYGPPGTGKTSTILACAKQL 59

Query: 79  GVNFRSTSGPVIAKAGDLA-------ALLTNLEDRDVL-------FIDEIHRLSIIVEEI 124
               +  S  +   A D          +L     + +         +DE   ++   +  
Sbjct: 60  YEKNQLKSMVLELNASDDRGIGVVREQILNFASTKTIFGGRFKMIILDEADAMTRDAQNA 119

Query: 125 L 125
           L
Sbjct: 120 L 120


>gi|297829516|ref|XP_002882640.1| hypothetical protein ARALYDRAFT_478309 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328480|gb|EFH58899.1| hypothetical protein ARALYDRAFT_478309 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 809

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 51/270 (18%), Positives = 89/270 (32%), Gaps = 43/270 (15%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------------VLFVGPPGLGKTTLA 71
            L++  G  +     K   +  +     L H              +L  GPPG GKT +A
Sbjct: 200 RLDD-VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIA 258

Query: 72  QVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEE 123
           + VA E G  F   +GP I          +L       E     ++FIDEI  ++   E+
Sbjct: 259 RAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREK 318

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
                        +V +  +      + +   ++ AT R   +   L+ RFG        
Sbjct: 319 -----TNGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALR-RFG--RFDREI 370

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV-RDFAEVAHAKTIT 242
           +I     I +   ++  +   +    E         RI+      V  D A +      T
Sbjct: 371 DIGVPDEIGR--LEVLRIHTKNMKLAEDV----DLERISKDTHGYVGADLAAL-----CT 419

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIA 272
                    ++ +  +  D +D   L  +A
Sbjct: 420 EAALQCIREKMDVIDLEDDSIDAEILNSMA 449



 Score = 54.3 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/216 (18%), Positives = 74/216 (34%), Gaps = 16/216 (7%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +          ++  +          V
Sbjct: 517 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCV 576

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           LF DE+  ++                D ++ +  +            +I AT R  ++ +
Sbjct: 577 LFFDELDSIATQRGGGS-GGDGGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDS 635

Query: 169 PLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
            L    R    I +   + +    I +   + + +A   + A         +      + 
Sbjct: 636 ALLRPGRLDQLIYIPLPDEDSRLNIFKAALRKSPIAKDVDIAALAKYTQGFSGADITEIC 695

Query: 227 RRVRDFAEVAH-----AKTITREIADAALLRLAIDK 257
           +R   +A   +      K   R     A+    +D+
Sbjct: 696 QRACKYAIRENIEKDIEKEKRRNENPEAMEEDGVDE 731


>gi|229818436|ref|ZP_04448717.1| hypothetical protein BIFANG_03743 [Bifidobacterium angulatum DSM
           20098]
 gi|229784306|gb|EEP20420.1| hypothetical protein BIFANG_03743 [Bifidobacterium angulatum DSM
           20098]
          Length = 692

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 56/247 (22%), Positives = 90/247 (36%), Gaps = 19/247 (7%)

Query: 25  RTLEEFTGQVEAC---SNLKVFIE---AAKARAEALD-HVLFVGPPGLGKTTLAQVVARE 77
               +  G+ EA      +K F++     KA    +   VL  GPPG GKT LA+ +A E
Sbjct: 209 TRFSDVAGEDEALAEVEEIKDFLKDPSKYKALGARIPRGVLLYGPPGTGKTLLARAIAGE 268

Query: 78  LGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM 129
            GV F S +G       V   A  +  L    +     ++FIDEI  +       +    
Sbjct: 269 AGVPFYSMAGSDFVEMFVGLGASRVRDLFDEAKKNAPAIIFIDEIDAVGRKRGSGMGGGH 328

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
           ++ +  L   +         N +   +IAAT R  +L   L    RF   + +   ++E 
Sbjct: 329 DEREQTL--NQLLVEMDGFNNDTNLIIIAATNRPDVLDPALLRPGRFDRQVGVAAPDLEG 386

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            + I++  AK        +           T      +L         A A+ I     D
Sbjct: 387 REAILKVHAKGKPFVPDVDLHMVAVRTPGFTGADLANVLNEAALLCARAGAQLIDNRAID 446

Query: 248 AALLRLA 254
            A+ R+ 
Sbjct: 447 EAIDRVQ 453


>gi|164655411|ref|XP_001728835.1| hypothetical protein MGL_4002 [Malassezia globosa CBS 7966]
 gi|159102721|gb|EDP41621.1| hypothetical protein MGL_4002 [Malassezia globosa CBS 7966]
          Length = 1097

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 80/229 (34%), Gaps = 36/229 (15%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  F+   K R      ++  VGPPG+GKT++ + +AR L   F   S
Sbjct: 578 EDHFGLNDVKDRILEFLAIGKLRGTVQGKIICLVGPPGVGKTSIGKSIARALDRQFYRFS 637

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              ++   ++                        +  ++ IDE+ +L             
Sbjct: 638 VGGLSDVAEIKGHRRTYVGAMPGKAIQALKKVGTENPLILIDEVDKLGRGYNGDPSSALL 697

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V ++LSR   +     +  +  PL DR  + I ++ 
Sbjct: 698 EMLDPEQNSSFLD-------HYMDVPVDLSRVLFVCTANTLDTIPQPLLDRMEV-IEVSS 749

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
           Y  E+ + I +           + +  +    +     I   + R  R+
Sbjct: 750 YTAEEKRHIAR---DYLAPQAKEASGLKDTDVTLPDESIDFIIKRYARE 795


>gi|83318181|gb|AAI09219.1| LONP1 protein [Homo sapiens]
          Length = 848

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 71/192 (36%), Gaps = 33/192 (17%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI  ++ R      +L F GPPG+GKT++A+ +AR L   +   S
Sbjct: 378 EDHYGMEDVKKRILEFIAVSQLRGSTQGKILCFYGPPGVGKTSIARSIARALNREYFRFS 437

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVEEI------ 124
              +    ++                        +  ++ IDE+ ++    +        
Sbjct: 438 VGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLILIDEVDKIGRGYQGDPSSALL 497

Query: 125 --LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             L P      LD           V ++LS+   I        +  PL+DR  + I ++ 
Sbjct: 498 GLLDPEQNANFLD-------HYLDVPVDLSKVLFICTANVTDTIPEPLRDRMEM-INVSG 549

Query: 183 YEIEDLKTIVQR 194
           Y  ++   I +R
Sbjct: 550 YVAQEKLAIAER 561


>gi|55377635|ref|YP_135485.1| cell division control protein 48 [Haloarcula marismortui ATCC
           43049]
 gi|55230360|gb|AAV45779.1| cell division control protein 48 [Haloarcula marismortui ATCC
           43049]
          Length = 757

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 61/255 (23%), Positives = 93/255 (36%), Gaps = 34/255 (13%)

Query: 2   MDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAE--------A 53
           M  E + S   + E +D   +   T E+  G       ++  IE      E         
Sbjct: 170 MPAEQVHSGEGAPEASDTPDV---TYEDIGGLDRELEQVREMIELPMRHPELFQQLGIEP 226

Query: 54  LDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR- 106
              VL  GPPG GKT +A+ VA E+   F + SGP I           L  +     +  
Sbjct: 227 PKGVLLHGPPGTGKTLMAKAVANEIDAYFTTISGPEIMSKYYGESEEQLREVFDEASENA 286

Query: 107 -DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
             ++FIDEI  ++    E      +      +V +  S         +  +I AT RV  
Sbjct: 287 PAIVFIDEIDSIAPKRGE-----TQGDVERRVVAQLLSLMDGLEERGQVIVIGATNRVDD 341

Query: 166 LTNPLQD--RFGIPIRLNFYEIEDLKTIVQ---RGAKLTGLAVTDEAACEI-----AMRS 215
           +   L+   RF   I +   + +  K I+Q   RG  L+     +  A        A  +
Sbjct: 342 IDPALRRGGRFDREIEIGVPDKKGRKEILQVHTRGMPLSEEINIENYAENTHGFVGADLA 401

Query: 216 RGTPRIAGRLLRRVR 230
             T   A   LRR+R
Sbjct: 402 TLTKESAMNALRRIR 416



 Score = 47.0 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 34/74 (45%), Gaps = 8/74 (10%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLED 105
           EA   VL  GPPG GKT LA+ VA E   NF S  GP +           +  + +   +
Sbjct: 498 EAAKGVLMYGPPGTGKTLLAKAVANEAQSNFISVKGPELLNKFVGESEKGVREVFSKARE 557

Query: 106 R--DVLFIDEIHRL 117
               V+F DEI  +
Sbjct: 558 NAPTVVFFDEIDSI 571


>gi|14590135|ref|NP_142199.1| proteasome-activating nucleotidase [Pyrococcus horikoshii OT3]
 gi|20532203|sp|O57940|PAN_PYRHO RecName: Full=Proteasome-activating nucleotidase; Short=PAN;
           AltName: Full=Proteasomal ATPase; AltName:
           Full=Proteasome regulatory ATPase; AltName:
           Full=Proteasome regulatory particle
 gi|3256587|dbj|BAA29270.1| 399aa long hypothetical 26S protease regulatory subunit [Pyrococcus
           horikoshii OT3]
          Length = 399

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 52/268 (19%), Positives = 93/268 (34%), Gaps = 29/268 (10%)

Query: 23  RPR-TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQV 73
           RP  T  +  G  +    L+  IE      E            VL  GPPG GKT +A+ 
Sbjct: 134 RPNVTYNDIGGLKKQLQELREAIELPLKHPELFEEVGIDPPKGVLLYGPPGCGKTLMAKA 193

Query: 74  VARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEIL 125
           +A E+   F    G  +        A  +  L    +++   ++FIDEI  +     +  
Sbjct: 194 LAHEVNATFIRVVGSELVRKYIGEGARLVHELFELAKEKAPTIIFIDEIDAIGAKRMDE- 252

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183
                + +++  + +  +            +IAAT R  +L   L    RF   I +   
Sbjct: 253 -TTGGEREVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLP 311

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           + E    I++   +   L   D  A      +  T   +G  L+ +   A +   +    
Sbjct: 312 DFEGRLEILKVHTRRMKLKGVDLRAI-----AEMTEGASGADLKAIATEAGMFAIRERRT 366

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMI 271
            +     L+     +G    + + L  I
Sbjct: 367 YVTQEDFLKAVDKVLG---NERKLLQQI 391


>gi|15232776|ref|NP_187595.1| CDC48 (CELL DIVISION CYCLE 48); ATPase/ identical protein binding
           [Arabidopsis thaliana]
 gi|1705677|sp|P54609|CD48A_ARATH RecName: Full=Cell division control protein 48 homolog A;
           Short=AtCDC48a
 gi|6681343|gb|AAF23260.1|AC015985_18 putative transitional endoplasmic reticulum ATPase [Arabidopsis
           thaliana]
 gi|1019904|gb|AAC49120.1| cell division cycle protein [Arabidopsis thaliana]
 gi|17473551|gb|AAL38252.1| putative transitional endoplasmic reticulum ATPase [Arabidopsis
           thaliana]
 gi|20453130|gb|AAM19807.1| AT3g09840/F8A24_11 [Arabidopsis thaliana]
 gi|110735114|gb|ABG89127.1| CDC48a [synthetic construct]
 gi|222424942|dbj|BAH20422.1| AT3G09840 [Arabidopsis thaliana]
 gi|332641299|gb|AEE74820.1| cell division control protein 48-A [Arabidopsis thaliana]
          Length = 809

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 51/270 (18%), Positives = 89/270 (32%), Gaps = 43/270 (15%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------------VLFVGPPGLGKTTLA 71
            L++  G  +     K   +  +     L H              +L  GPPG GKT +A
Sbjct: 200 RLDD-VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIA 258

Query: 72  QVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEE 123
           + VA E G  F   +GP I          +L       E     ++FIDEI  ++   E+
Sbjct: 259 RAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREK 318

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
                        +V +  +      + +   ++ AT R   +   L+ RFG        
Sbjct: 319 -----TNGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALR-RFG--RFDREI 370

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV-RDFAEVAHAKTIT 242
           +I     I +   ++  +   +    E         RI+      V  D A +      T
Sbjct: 371 DIGVPDEIGR--LEVLRIHTKNMKLAEDV----DLERISKDTHGYVGADLAAL-----CT 419

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIA 272
                    ++ +  +  D +D   L  +A
Sbjct: 420 EAALQCIREKMDVIDLEDDSIDAEILNSMA 449



 Score = 54.3 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 76/216 (35%), Gaps = 11/216 (5%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +          ++  +          V
Sbjct: 517 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCV 576

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           LF DE+  ++                D ++ +  +            +I AT R  ++ +
Sbjct: 577 LFFDELDSIATQRGGGS-GGDGGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDS 635

Query: 169 PLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
            L    R    I +   + +    I +   + + +A   +           +      + 
Sbjct: 636 ALLRPGRLDQLIYIPLPDEDSRLNIFKAALRKSPIAKDVDIGALAKYTQGFSGADITEIC 695

Query: 227 RRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQ 262
           +R   +A   + +    +    +    A+++ G D+
Sbjct: 696 QRACKYAIRENIEKDIEKEKRRSENPEAMEEDGVDE 731


>gi|323705587|ref|ZP_08117161.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535064|gb|EGB24841.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 611

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 60/246 (24%), Positives = 90/246 (36%), Gaps = 23/246 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  E    L+  +E  K   + LD        VL VGPPG GKT LA+ VA E 
Sbjct: 156 TFNDVAGADEEKEELQEIVEFLKFPKKFLDLGARIPKGVLLVGPPGTGKTLLAKAVAGEA 215

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG       V   A  +  L    +     ++FIDEI  +       L    +
Sbjct: 216 GVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNSPCIIFIDEIDAVGRHRGAGLGGGHD 275

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E       +       +IAAT R  +L   L    RF   + +   +I+
Sbjct: 276 EREQTLNQLLVEMDGFSVNEG----IIVIAATNRPDILDPALLRPGRFDRHVTVGVPDIK 331

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++  ++   LA               T      L+            K IT    
Sbjct: 332 GREEILKVHSRNKPLAPDVSLKVLARRTPGFTGADIENLMNEAALLTARKGMKQITMVEL 391

Query: 247 DAALLR 252
           + A+ R
Sbjct: 392 EEAITR 397


>gi|186681813|ref|YP_001865009.1| ATP-dependent metalloprotease FtsH [Nostoc punctiforme PCC 73102]
 gi|186464265|gb|ACC80066.1| ATP-dependent metalloprotease FtsH [Nostoc punctiforme PCC 73102]
          Length = 628

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 60/266 (22%), Positives = 96/266 (36%), Gaps = 23/266 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
             ++  G  EA   L+  +   K         A     VL VGPPG GKT LA+ +A E 
Sbjct: 171 KFDDVAGIEEAKEELQEVVTFLKQPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEA 230

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG           A  +  L    +D    ++FIDEI  +       +    +
Sbjct: 231 GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKDNAPCIIFIDEIDAVGRQRGAGIGGGND 290

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E               +IAAT R  +L + L    RF   + ++  +I+
Sbjct: 291 EREQTLNQLLTEMDGFEGNTG----IIIIAATNRPDVLDSALLRPGRFDRQVTVDAPDIK 346

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
               I++  ++   L  +             T      LL            + IT    
Sbjct: 347 GRLEILEVHSRNKKLDPSVSLDAIARRTPGFTGADLANLLNEAAILTARRRKEAITLREI 406

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIA 272
           D A+ R+     G   +D +   +IA
Sbjct: 407 DDAVDRVVAGMEGTPLVDSKSKRLIA 432


>gi|14520611|ref|NP_126086.1| cell division protein CDC48 [Pyrococcus abyssi GE5]
 gi|5457827|emb|CAB49317.1| Cdc48 cell division control protein 48, AAA family [Pyrococcus
           abyssi GE5]
          Length = 795

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 58/275 (21%), Positives = 96/275 (34%), Gaps = 35/275 (12%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
           T E+  G  +    ++  IE      E            VL  GPPG GKT LA+ VA E
Sbjct: 180 TYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANE 239

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM 129
               F + +GP I           L  +    E+    ++FIDEI  ++    E     +
Sbjct: 240 ANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSE-----V 294

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                  +V +  +      +  +  +I AT R   +   L+   RF   I +   + + 
Sbjct: 295 TGEVEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQG 354

Query: 188 LKTIVQ---RGAKLTGLAVTDEAA--CEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            K I+Q   RG  +      D+     E   R     +I  + +       EV  +K   
Sbjct: 355 RKEILQIHTRGMPIEPDFRKDDVLKILEDFKREGKFTKIIDKAIE------EVNKSKEEE 408

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGG 277
                  +     D++    +D + L  +A    G
Sbjct: 409 IPQVLKKIDAELYDEVKTRLID-KLLDELADVTHG 442



 Score = 54.3 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 48/240 (20%), Positives = 80/240 (33%), Gaps = 23/240 (9%)

Query: 28  EEFTGQVEACSNLKVFIE-------AAKARAEALD-HVLFVGPPGLGKTTLAQVVARELG 79
           ++  G  +    L+  +E       A KA        +L  GPPG GKT LA+ VA E  
Sbjct: 516 DDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVATESQ 575

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAMED 131
            NF +  GP I          ++  +          V+FIDEI  ++      +     +
Sbjct: 576 ANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRGTDV-----N 630

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
              D ++ +  +        +   +IAAT R  +L   L    RF   I +   + +   
Sbjct: 631 RVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARF 690

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            I +   +   LA   +           T      + R     A     +    +    A
Sbjct: 691 EIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIKPGMKA 750


>gi|327295456|ref|XP_003232423.1| intermembrane space AAA protease [Trichophyton rubrum CBS 118892]
 gi|326465595|gb|EGD91048.1| intermembrane space AAA protease [Trichophyton rubrum CBS 118892]
          Length = 806

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 55/243 (22%), Positives = 90/243 (37%), Gaps = 26/243 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G  EA   L+  +E        +    +    +L VGPPG GKT LA+ VA E 
Sbjct: 340 RFSDVHGCDEAKDELQELVEFLSNPERFSSLGGKLPKGILLVGPPGTGKTLLARAVAGEA 399

Query: 79  GVNFRSTSGPVIA------KAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAME 130
           GV F   SG           A  +  L      +   ++FIDE+  +     E    A  
Sbjct: 400 GVPFFYMSGSEFDEIYVGVGAKRVRELFAQARAKAPAIIFIDELDAIGAKRNER-DAAYV 458

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
              L+ ++ E           S   +IAAT    LL   L    RF   + +N  ++   
Sbjct: 459 KQTLNQLLTELDGFSQT----SGVIIIAATNFPELLDKALTRPGRFDRKVDVNLPDVRGR 514

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             I+    K   ++   +A     + +RGTP  +G  L  + + A +  ++    ++   
Sbjct: 515 VDILNHHMKNIQVSTEVDA----TVIARGTPGFSGADLENLINQAAIRASRDKKAKVGPE 570

Query: 249 ALL 251
              
Sbjct: 571 DFD 573


>gi|38455496|gb|AAR20845.1| cell division cycle protein 48 [Pseudochlorella sp. CCAP 211/1A]
          Length = 614

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 52/259 (20%), Positives = 86/259 (33%), Gaps = 34/259 (13%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------------VLFVGPPGLGKTTLA 71
            L++  G  +     K   +  +     L H              +L  GPPG GKT +A
Sbjct: 3   NLDD-VGYDDVGGVRKQMAQIRELVELPLRHPQLFKTIGVKPPKGILLYGPPGSGKTLIA 61

Query: 72  QVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEE 123
           + VA E G  F   +GP I          +L       E     ++FIDEI  ++   E+
Sbjct: 62  RAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAIIFIDEIDSIAPKREK 121

Query: 124 ILYPAMEDFQLDLMV-GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRL 180
                       L+   +G  ARS  I      ++ AT R   +   L+   RF   I +
Sbjct: 122 TQGEVERRIVSQLLTLMDGLKARSHVI------VMGATNRPNSIDAALRRFGRFDREIDI 175

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
              +      +++   K   L   + A  E+  R       A           +    K 
Sbjct: 176 GVPDEIGRLEVLRIHTKNMKL--DENAELELIGRDTHGYVGADLAALCTEAALQCIREKM 233

Query: 241 ITREIADAALLRLAIDKMG 259
              ++ D  +    ++ M 
Sbjct: 234 DVIDLEDDTIDAEILNSMA 252



 Score = 52.4 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 80/242 (33%), Gaps = 20/242 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVARE 77
             E+  G       L+  ++      E            VLF GPPG GKT LA+ +A E
Sbjct: 281 NWEDVGGLEGVKRELQEVVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTPLAKAIANE 340

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
              NF S  GP +          ++  +L         VLF DE+  ++         A 
Sbjct: 341 CQANFISVKGPELLTMWFGESEANVREILDKARQSAPCVLFFDELDSIANQRGSSQGDA- 399

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                D ++ +  +      +     +I AT R  ++ + L    R    I +   +   
Sbjct: 400 -GGAADRVLNQMLTEMDGMNSKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDDPS 458

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
              I +   + + +A   +    +   +  +      + +R   +A   + +        
Sbjct: 459 RNQIFKAALRKSPVAPDVDINQLVKYTNGFSGADITEICQRACKYAIRENIEKDIEREKR 518

Query: 248 AA 249
            A
Sbjct: 519 LA 520


>gi|298493199|ref|YP_003723376.1| ATP-dependent metalloprotease FtsH ['Nostoc azollae' 0708]
 gi|298235117|gb|ADI66253.1| ATP-dependent metalloprotease FtsH ['Nostoc azollae' 0708]
          Length = 631

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 62/274 (22%), Positives = 99/274 (36%), Gaps = 23/274 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
             ++  G  EA   L+  +   K         A     VL VGPPG GKT LA+ +A E 
Sbjct: 173 KFDDVAGIEEAKEELQEVVTFLKQPEKFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEA 232

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG           A  +  L    +D    ++FIDEI  +       +    +
Sbjct: 233 GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKDNAPCIIFIDEIDAVGRQRGAGIGGGND 292

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E               +IAAT R  +L + L    RF   + ++  +I+
Sbjct: 293 EREQTLNQLLTEMDGFEGNTG----IIIIAATNRPDVLDSALLRPGRFDRQVTVDAPDIK 348

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
               I++  ++   L  +             T      LL             TIT    
Sbjct: 349 GRLEILEVHSRNKKLDPSVSLDAIARRTPGFTGADLANLLNEAAILTARRRKDTITILEI 408

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV 280
           D A+ R+     G   +D +   +IA +  G  +
Sbjct: 409 DDAVDRVVAGMEGAALVDSKNKRLIAYHEVGHAL 442


>gi|296808071|ref|XP_002844374.1| intermembrane space AAA protease IAP-1 [Arthroderma otae CBS
           113480]
 gi|238843857|gb|EEQ33519.1| intermembrane space AAA protease IAP-1 [Arthroderma otae CBS
           113480]
          Length = 803

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 55/243 (22%), Positives = 90/243 (37%), Gaps = 26/243 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G  EA   L+  +E        +    +    +L VGPPG GKT LA+ VA E 
Sbjct: 337 RFSDVHGCDEAKDELQELVEFLSNPDRFSSLGGKLPKGILLVGPPGTGKTLLARAVAGEA 396

Query: 79  GVNFRSTSGPVIA------KAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAME 130
           GV F   SG           A  +  L      +   ++FIDE+  +     E    A  
Sbjct: 397 GVPFFYMSGSEFDEIYVGVGAKRVRELFNQARSKAPAIIFIDELDAIGAKRNER-DAAYV 455

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
              L+ ++ E           S   +IAAT    LL   L    RF   + +N  ++   
Sbjct: 456 KQTLNQLLTELDGFSQT----SGVIIIAATNFPELLDKALTRPGRFDRKVNVNLPDVRGR 511

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             I+    K   ++   +A     + +RGTP  +G  L  + + A +  ++    ++   
Sbjct: 512 VDILNHHMKNIQVSTEVDA----TVIARGTPGFSGADLENLINQAAIRASRDKKAKVGPE 567

Query: 249 ALL 251
              
Sbjct: 568 DFD 570


>gi|225464696|ref|XP_002277556.1| PREDICTED: hypothetical protein isoform 4 [Vitis vinifera]
          Length = 783

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 80/224 (35%), Gaps = 43/224 (19%)

Query: 3   DREGLLSRNVSQEDADISLLRPR---------TLEEFTGQVEACSNLKVFIEAAKARAEA 53
           D   L +  V  ++     +RP          T ++     +   +L+  +     R + 
Sbjct: 439 DTLKLETNEVPPDNEFEKRIRPEVIPANEIGVTFDDIGALSDIKESLQELVMLPLRRPDL 498

Query: 54  LDH--------VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAAL 99
                      +L  GPPG GKT LA+ +A E G +F + S   I          ++ AL
Sbjct: 499 FKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRAL 558

Query: 100 LTNLED--RDVLFIDEIH-----RLSIIVEEILYPAMEDF---QLDLMVGEGPSARSVKI 149
            T        ++F+DE+      R  +   E +     +F      L+   G        
Sbjct: 559 FTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTKAG-------- 610

Query: 150 NLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
              R  ++AAT R   L   +  RF   I +    +E  + I++
Sbjct: 611 --ERILVLAATNRPFDLDEAIIRRFERRIMVGLPSVESREMILK 652


>gi|169828722|ref|YP_001698880.1| stage V sporulation protein K [Lysinibacillus sphaericus C3-41]
 gi|168993210|gb|ACA40750.1| Stage V sporulation protein K [Lysinibacillus sphaericus C3-41]
          Length = 569

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 57/293 (19%), Positives = 103/293 (35%), Gaps = 48/293 (16%)

Query: 2   MDREGL-LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH---- 56
           +D E L ++  + QE   + +     L+   G   A   L   I   K ++  +DH    
Sbjct: 278 IDDERLRITPEIEQEIEKLQM----QLDSLVGLPNAKKELHNLINFIKIQSLRVDHGLTS 333

Query: 57  ------VLFVGPPGLGKTTLAQVVAR--------ELGVNFRSTSGPVIAK-----AGDLA 97
                 ++F G PG GKTT+A+++ +          G    +    ++A      A  + 
Sbjct: 334 FPITYHLVFSGNPGTGKTTVARIIGQIYKYLGVLSSGHFVETDRAGLVAGYVGQTALKVQ 393

Query: 98  ALLTNLEDRDVLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKI 149
            ++   +   VLFIDE + L    +        + L  AMED + DL++        +  
Sbjct: 394 EVVHKAKGG-VLFIDEAYSLINDKQDAFGKEAIDSLLKAMEDLRDDLVIIVAGYTELMDE 452

Query: 150 NL-------SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI-EDLKTIVQRGAKLTGL 201
            L       SRF            T  L + F +  + N Y   E     ++R      +
Sbjct: 453 FLQSNPGFKSRFNHFVQFDNFS--TQELYEIFAMLCQTNDYHYGESFAHHMKRQLNQIPI 510

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
                 +    +R     ++      R+ + A +   + +T E  D  L    
Sbjct: 511 ENISNFSNGRYIR-NLFEKLVTIQSNRLIEQATITKEQLMTFEEHDILLGMAE 562


>gi|326918945|ref|XP_003205745.1| PREDICTED: spermatogenesis-associated protein 5-like [Meleagris
           gallopavo]
          Length = 870

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 81/229 (35%), Gaps = 34/229 (14%)

Query: 29  EFTGQVEACSNLKVFIEAAK---ARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
           +  G     S L+   E  +    +AE            VL  GPPG GKT +A+ +A E
Sbjct: 330 DMIG--GLSSQLRTIREMVELPLKQAELFKSYGISPPRGVLLYGPPGTGKTLIAKAIANE 387

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIV---EEILY 126
           +G +    +GP I           L  +      R   ++FIDE+  L       +  + 
Sbjct: 388 VGAHVTVINGPEIISKFYGESESRLRQIFAEASLRRPSIIFIDELDALCPKREGAQNEVE 447

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
             +    L LM G G      ++      ++ AT R  +L   L+   RF   I +    
Sbjct: 448 KRIVASLLTLMDGIGSEGSEGQL-----VVLGATNRPHVLDAALRRPGRFDKEIEIGIPN 502

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
            +D   I+Q   KL         A E+   +       G  L  +   A
Sbjct: 503 AQDRLDILQ---KLLKKVPHSLTAAEMMQLADSAHGYVGADLAALCKEA 548



 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 50/263 (19%), Positives = 92/263 (34%), Gaps = 30/263 (11%)

Query: 15  EDADISLLR------PR-TLEEFTGQVEACSNLKVFIE--------AAKARAEALDHVLF 59
           +D   S +R      P+ +  +  G  +    LK  +E          +   +    VL 
Sbjct: 584 KDVRPSAMREVAVDVPKISWSDIGGLEDVKLKLKQAVEWPLKHPDSFIRMGIQPPKGVLL 643

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DVLFI 111
            GPPG  KT +A+ +A E G+NF +  GP +     G+    +  +  +       +LF 
Sbjct: 644 YGPPGCSKTMIAKALAHESGLNFLAVKGPELMNKYVGESERAVREIFRKARMVSPSILFF 703

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+  L++               D ++ +  +       L   T++AAT R  ++   L 
Sbjct: 704 DEMDALAVERGNSSGAGN---VADRVLAQLLTEMDGIEQLKDVTVLAATNRPDMIDKALL 760

Query: 172 D--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
              R    I +   +      I +   +   ++     A  +    + +      + R  
Sbjct: 761 RPGRIDRIIYVPLPDAATRGEIFKLHFRSMPISEEICLAELVQHTHKYSGAEITAVCREA 820

Query: 230 RDFA--EVAHAKTITREIADAAL 250
              A  E  +AK I       AL
Sbjct: 821 ALLALQEDINAKCILGRHFRDAL 843


>gi|323456556|gb|EGB12423.1| hypothetical protein AURANDRAFT_52218 [Aureococcus anophagefferens]
          Length = 798

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 57/244 (23%), Positives = 91/244 (37%), Gaps = 26/244 (10%)

Query: 25  RTLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +   +  G  EA   L+  +          +   +     L +GPPG GKT LA+ +A E
Sbjct: 266 KRFSDVMGVDEAKQELEEIVMFLSDPTRFTRLGGKLPKGCLLMGPPGTGKTLLARAIAGE 325

Query: 78  LGVNFRSTSGPVIA------KAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
            GV F   SG           A  +  L    + R   ++FIDEI  +          AM
Sbjct: 326 AGVPFFYASGSEFEEMYVGVGARRVRDLFEAAKKRSPCIIFIDEIDAIGASRHLKEQQAM 385

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
           +     L+V      ++         +I AT     L   L    RF   + +   ++E 
Sbjct: 386 KMTLNQLLVEMDGFEQNHG-----VIVIGATNIADSLDPALLRPGRFDRHVSVPLPDVEG 440

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            K I+    KL    +  +A  +I   +RGTP ++G  L  + + A +  A      +  
Sbjct: 441 RKQIL----KLHSGKIPLDADADIDALARGTPGMSGADLSNLVNQAALKAALDGLDAVTT 496

Query: 248 AALL 251
            AL 
Sbjct: 497 KALD 500


>gi|322700953|gb|EFY92705.1| ATP-dependent protease La [Metarhizium acridum CQMa 102]
          Length = 1118

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 50/261 (19%), Positives = 91/261 (34%), Gaps = 38/261 (14%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI   K R      +L FVGPPG+GKT++ + +AR L   +   S
Sbjct: 570 EDHYGLQDVKDRILEFIAVGKLRGTVEGKILCFVGPPGVGKTSIGKSIARALNREYYRFS 629

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ ++    +        
Sbjct: 630 VGGLTDVAEIKGHRRTYVGALPGRIIQALKKCQTENPLILIDEVDKIGRGYQGDPSSALL 689

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V ++LS+   +        +  PL DR  + I L+ 
Sbjct: 690 ELLDPEQNSSFLD-------HYMDVPVDLSKVLFVCTANMTDTIPRPLLDRMEL-ITLSG 741

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  ++ K I    A         +AA         T      L++     + V + K   
Sbjct: 742 YVADEKKAI----ANTYLAPAAKDAAGLKGANVNLTDEAVEELIKSYCRESGVRNLKKQI 797

Query: 243 REIADAALLRLAIDKMGFDQL 263
            ++   +     + ++G D L
Sbjct: 798 EKVYRKS-ALKIVQELGEDVL 817


>gi|307353142|ref|YP_003894193.1| Replication factor C [Methanoplanus petrolearius DSM 11571]
 gi|307156375|gb|ADN35755.1| Replication factor C [Methanoplanus petrolearius DSM 11571]
          Length = 332

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 39/251 (15%), Positives = 74/251 (29%), Gaps = 18/251 (7%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
            I   RP    E  GQ E   +L+ F+ ++K     L H+L  GP G GK+   + +AR 
Sbjct: 3   WIEKYRPTKFSEIKGQDEVRGHLEGFVASSK-----LPHLLLFGPHGTGKSCALECLARG 57

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           +   + + +  +I         L       +  +D+   L    +E +    +       
Sbjct: 58  IYGEYSADNLTIIES-----GALFRHGKSWLENMDKFSHLYK-KDESVLSNFKRIVRWYA 111

Query: 138 VGE--GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
             +      + +    +      A   +  +           +       +    I    
Sbjct: 112 SMKPFNAEFKIIAFEEAHLLPFDAQAALRRIMEKYSATCRFVLMTQ----QQTSVIPAIA 167

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAG-RLLRRVRDFAEVAHAKTITREIADAALLRLA 254
           ++   L        EI    +  P  AG        D   +A +       A   L    
Sbjct: 168 SRCLPLFFRPLDNEEIISVLKEIPYDAGAGFAISEEDLEFIAGSAKGDCRKAVTYLQLFV 227

Query: 255 IDKMGFDQLDL 265
           +     D  D+
Sbjct: 228 MKGGSLDLADI 238


>gi|221480962|gb|EEE19376.1| hypothetical protein TGGT1_094980 [Toxoplasma gondii GT1]
          Length = 592

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 60/292 (20%), Positives = 101/292 (34%), Gaps = 36/292 (12%)

Query: 3   DREGLLSRNVSQEDADISLL----RPRTLEEF--TGQVEACSNLKVFIEAA--------- 47
           D   +L +  ++ D+ +  +    RP+  EE+   G       ++  IEA          
Sbjct: 308 DSYLVLDKLPAEYDSRVRAMEVDERPQ--EEYNDVG--GLDKQIQELIEAVVLPMTHKER 363

Query: 48  --KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAAL 99
             K        VL  GPPG GKT LA+  A +    F   +GP +        A  +   
Sbjct: 364 FEKIGIRPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKMVRDA 423

Query: 100 LTNLEDR--DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLI 157
               +++   ++FIDE+  +     +       + Q  ++            +  R  +I
Sbjct: 424 FELAKEKAPAIIFIDELDAIGTKRFDSELSGDREVQRTMLELLNQLDGFSSDD--RIKVI 481

Query: 158 AATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRS 215
           AAT R  +L   L    R    I L     E  + I+Q  A+   +   D    E+A   
Sbjct: 482 AATNRPDVLDPALLRSGRLDRKIELPHPNEEARERILQIHARKMNVNKEDVNFRELA--- 538

Query: 216 RGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRY 267
           R T    G  L+ V   A +   +    E+     +          +  L Y
Sbjct: 539 RATDDFNGAQLKAVCVEAGMVALRRGASELCHEDFVEGVAQVQAKKKSSLNY 590


>gi|321257866|ref|XP_003193734.1| mitochondrial Lon domain protease [Cryptococcus gattii WM276]
 gi|317460204|gb|ADV21947.1| Mitochondrial Lon domain protease, putative [Cryptococcus gattii
           WM276]
          Length = 1105

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 50/254 (19%), Positives = 87/254 (34%), Gaps = 37/254 (14%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  F+   K R      +L  VGPPG+GKT++ + +A+ LG  F   S
Sbjct: 564 EDHYGLKDVKDRILEFMAIGKLRGSVEGKILCLVGPPGVGKTSIGKSIAKALGRQFFRFS 623

Query: 87  GPVIAKAGDLAALLTN----------------LEDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ ++S            
Sbjct: 624 VGGLTDVAEIKGHRRTYIGAMPGKPIQALKKVATENPLILIDEVDKISKAYNGDPASALL 683

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD  +        V I+LSR   +     +  +  PL DR  +     +
Sbjct: 684 EMLDPEQNKSFLDHYL-------DVPIDLSRVLFVCTANVLETIPGPLLDRMEVLEVSGY 736

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
              E +  I +R            AA    +     P     L+R     + V + K   
Sbjct: 737 VSAEKM-NIAER----YLSPQAKTAAGLEDVNIELEPGAIEALIRYYCRESGVRNLKKHI 791

Query: 243 REIADAALLRLAID 256
            +I   A  ++  D
Sbjct: 792 DKIYRKAAFKIVTD 805


>gi|290558951|gb|EFD92336.1| AAA family ATPase, CDC48 subfamily [Candidatus Parvarchaeum
           acidophilus ARMAN-5]
 gi|290559274|gb|EFD92611.1| AAA family ATPase, CDC48 subfamily [Candidatus Parvarchaeum
           acidophilus ARMAN-5]
          Length = 764

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 70/194 (36%), Gaps = 23/194 (11%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARELG 79
           E+  G  +  S ++  +E      E            VL  GPPG GKT LA+ VA E  
Sbjct: 214 EDVGGLKDEVSKIREMVEIPLKHPEIFMRLGVTPPRGVLLYGPPGAGKTLLARAVADESD 273

Query: 80  VNFRSTSGPVIAKA------GDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAMED 131
            +F + +GP +           L  +  + E     ++FIDEI  ++   EE +      
Sbjct: 274 AHFITINGPEVMSKWVGDAEKKLREIFDDAEKNAPSIIFIDEIDAIATKREESIGEVEHR 333

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
               L+            +  +  +IAAT R   +   L+   RF   I       +  +
Sbjct: 334 VVSQLLT-----LMDGLKSRGKVIVIAATNRPNAIDPALRRPGRFDREIMFGVPNEKGRQ 388

Query: 190 TIVQRGAKLTGLAV 203
            I+    +   +  
Sbjct: 389 EILNIHTRNMPMDK 402



 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 91/257 (35%), Gaps = 31/257 (12%)

Query: 23  RPRT-LEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQV 73
           RP     +  G  E   +LK  I+      +            +L  GPPG GKT LA+ 
Sbjct: 482 RPSVGWNDVGGLGEVKDHLKEAIDWPIKHPDSFRKIGITPPKGILLFGPPGTGKTLLAKA 541

Query: 74  VARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEIL 125
           VA E   NF +  GP I     G+    +  + D+       ++FIDE+  ++       
Sbjct: 542 VAHETESNFIAIKGPEIYNKYVGESEKRVREIFDKARQVSPSIIFIDELDSIASSRSNYE 601

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183
                +  ++ ++ E          L    +I AT R+  + + +    RF   + +   
Sbjct: 602 GNNSAEQVVNQLLTELDGIE----PLKNVIVIGATNRIDKVDSAILRTGRFDNIVFVPPP 657

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH------ 237
           +    K I++       +    E         + T    G  + R+   A +        
Sbjct: 658 DEAGRKEILKVYIDKMPIEGDKEELINFL--VKKTEGYVGSDIERLTKEAGMNALRNDIS 715

Query: 238 AKTITREIADAALLRLA 254
           A  +T++  + AL  + 
Sbjct: 716 ATKVTKDDFEKALELVR 732


>gi|269218252|ref|ZP_06162106.1| putative cell division protein [Actinomyces sp. oral taxon 848 str.
           F0332]
 gi|269212380|gb|EEZ78720.1| putative cell division protein [Actinomyces sp. oral taxon 848 str.
           F0332]
          Length = 1002

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 62/246 (25%), Positives = 92/246 (37%), Gaps = 23/246 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIE--AAKARAEALD-----HVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G+ EA + L+   E   A  R  AL       VL  GPPG GKT LA+ VA E 
Sbjct: 240 TFNDVAGEDEAVAELREITEFLTAPERFHALGAEIPRGVLLYGPPGTGKTLLARAVAGEA 299

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAME 130
           GV F S S            A  +  L    ++    ++F+DEI  +       +    +
Sbjct: 300 GVPFYSISASEFVEMFVGVGASRVRDLFNKAKENAPAIVFVDEIDAVGRGRGVGIGGGND 359

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E     S     S   LIAAT R  +L   L    RF   I ++  ++ 
Sbjct: 360 EREQTLNQLLVELDGFDSH----SNVILIAATNRPDVLDPALLRPGRFDRQISVDAPDLR 415

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++  AK    A   + A         T      +L      A     + I     
Sbjct: 416 GREAILKVHAKGKPFAPDVDLAMVARRTPGYTGADLENILNEAALLAARFGRRAIGVPDV 475

Query: 247 DAALLR 252
           D A+ R
Sbjct: 476 DEAIDR 481


>gi|238026784|ref|YP_002911015.1| FtsH endopeptidase [Burkholderia glumae BGR1]
 gi|237875978|gb|ACR28311.1| FtsH endopeptidase [Burkholderia glumae BGR1]
          Length = 629

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 51/249 (20%), Positives = 90/249 (36%), Gaps = 23/249 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAA-------KARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G  EA   +   ++         K        VL VGPPG GKT LA+ +A E 
Sbjct: 152 NFADVAGCDEAKEEVSELVDFLRDPQKFQKLGGRIPRGVLLVGPPGTGKTLLARAIAGEA 211

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  +    +     ++FIDEI  +       +    +
Sbjct: 212 KVPFFSISGSDFVEMFVGVGAARVRDMFEQAKKHAPCIVFIDEIDAVGRHRGAGMGGGND 271

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  M+ E     +     S   +IAAT R  +L   L    RF   + +   +I 
Sbjct: 272 EREQTLNQMLVEMDGFEAN----SGVIVIAATNRSDVLDKALLRPGRFDRQVYVGLPDIR 327

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++   +   ++   +AA         +      L+     FA     + +  +  
Sbjct: 328 GREQIMRVHLRKVPISNDVDAAVLARGTPGFSGADLANLVNEAALFAARRGKRIVEMQDF 387

Query: 247 DAALLRLAI 255
           + A  ++ +
Sbjct: 388 EDAKDKIFM 396


>gi|311114326|ref|YP_003985547.1| cell division protein FtsH [Gardnerella vaginalis ATCC 14019]
 gi|310945820|gb|ADP38524.1| cell division protein FtsH [Gardnerella vaginalis ATCC 14019]
          Length = 751

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 55/249 (22%), Positives = 92/249 (36%), Gaps = 20/249 (8%)

Query: 24  PRT-LEEFTG-QVEA--CSNLKVFIE---AAKARAEALD-HVLFVGPPGLGKTTLAQVVA 75
           P+T   +  G Q        +K F++     KA    +   VL  GPPG GKT LA+ +A
Sbjct: 238 PKTKFADVAGEQSAVEEVEEIKEFLKDPSRYKALGARIPRGVLLYGPPGTGKTLLARAIA 297

Query: 76  RELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYP 127
            E GV F + +G       V   A  +  L    +     ++FIDEI  +       +  
Sbjct: 298 GEAGVPFYAMAGSDFVEMFVGLGASRVRELFDEAKKNAPAIIFIDEIDAVGRRRGSGMTG 357

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
             ++ +  L   +         N +   +IAAT R  +L + L    RF   + +   ++
Sbjct: 358 GHDEREQTL--NQLLVEMDGFDNDTNLIIIAATNRPDVLDSALLRPGRFDRQVAVEAPDL 415

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           E  + I++  AK        +           T      +L         + A+ I    
Sbjct: 416 EGREAILKVHAKGKPFVPDVDLHMVAVRTPGFTGADLANVLNEAALLCARSGAQLIDNRA 475

Query: 246 ADAALLRLA 254
            D A+ R+ 
Sbjct: 476 IDEAIDRVQ 484


>gi|168205403|ref|ZP_02631408.1| DNA polymerase III subunit gamma/tau [Clostridium perfringens E
           str. JGS1987]
 gi|170663165|gb|EDT15848.1| DNA polymerase III subunit gamma/tau [Clostridium perfringens E
           str. JGS1987]
          Length = 531

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 65/206 (31%), Gaps = 41/206 (19%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
              RP T E   GQ E    LK  + + K         L  G  G GKTT A+++A+ + 
Sbjct: 4   EKYRPNTFESVIGQGENAEILKKQVASKKIA----HSYLLYGERGSGKTTTARILAKAIN 59

Query: 80  V------------------------NFRSTSGPVIAKAGDLAALLTNLE------DRDVL 109
                                    +             ++  ++ +++         V 
Sbjct: 60  CLSPINGEPCGKCANCIAIEEKKAIDVVEIDAASNNGVDNIRNIIDDMKYAPTSMKYKVY 119

Query: 110 FIDEIHRLSIIVEEILYPAME---DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
            IDE H LS          +E   ++ + ++     +A  + I LSR       T   + 
Sbjct: 120 IIDEAHMLSKAASNAFLKTLEEPPEYGVFILCTTEQTALPITI-LSRCQRY---TFKHID 175

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIV 192
              + +R         Y   D + I+
Sbjct: 176 VKDIFNRINFIATQEGYNPSDKEKIL 201


>gi|322706678|gb|EFY98258.1| ATP-dependent protease La [Metarhizium anisopliae ARSEF 23]
          Length = 1124

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 50/262 (19%), Positives = 91/262 (34%), Gaps = 38/262 (14%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI   K R      +L FVGPPG+GKT++ + +AR L   +   S
Sbjct: 570 EDHYGLQDVKDRILEFIAVGKLRGTVEGKILCFVGPPGVGKTSIGKSIARALNREYYRFS 629

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ ++    +        
Sbjct: 630 VGGLTDVAEIKGHRRTYVGALPGRIIQALKKCQTENPLILIDEVDKIGRGYQGDPSSALL 689

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V ++LS+   +        +  PL DR  + I L+ 
Sbjct: 690 ELLDPEQNSSFLD-------HYMDVPVDLSKVLFVCTANMTDTIPRPLLDRMEL-ITLSG 741

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  ++ K I    A         +AA         T      L++     + V + K   
Sbjct: 742 YVADEKKAI----ANTYLAPAAKDAAGLKDANVNLTDEAVEELIKSYCRESGVRNLKKQI 797

Query: 243 REIADAALLRLAIDKMGFDQLD 264
            ++   +     + ++G D L 
Sbjct: 798 EKVYRKS-ALKIVQELGEDVLS 818


>gi|329942685|ref|ZP_08291464.1| DNA polymerase III, subunits gamma and tau [Chlamydophila psittaci
           Cal10]
 gi|332287280|ref|YP_004422181.1| DNA polymerase III subunits gamma and tau [Chlamydophila psittaci
           6BC]
 gi|313847864|emb|CBY16859.1| DNA polymerase III subunit gamma/tau [Chlamydophila psittaci RD1]
 gi|325507379|gb|ADZ19017.1| DNA polymerase III subunits gamma and tau [Chlamydophila psittaci
           6BC]
 gi|328814945|gb|EGF84934.1| DNA polymerase III, subunits gamma and tau [Chlamydophila psittaci
           Cal10]
 gi|328914526|gb|AEB55359.1| DNA polymerase III, subunit gamma/tau [Chlamydophila psittaci 6BC]
          Length = 443

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 54/274 (19%), Positives = 87/274 (31%), Gaps = 64/274 (23%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
              RP+T  E  GQ    + LK  ++  +         LF G  G GKTTLA++ A+ L 
Sbjct: 11  RKYRPQTFSEMLGQDAVVTVLKNALQFQRVAHAY----LFSGIRGTGKTTLARIFAKALN 66

Query: 80  VN-------------------------FRSTSGPVIAKAGDLAALLTNL------EDRDV 108
                                           G       D+  +   +          +
Sbjct: 67  CKELTPEHEPCNQCCVCKEISSGTSLDVIEIDGASHRGIEDIRQINETVLFTPAKSQYKI 126

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
             IDE+H L+      L   +E+                    S      ATT    +  
Sbjct: 127 YIIDEVHMLTKEAFNSLLKTLEE------------------PPSHVKFFLATTENYKIPG 168

Query: 169 PLQDRFGIPIRLNFYE---IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
            +  R          E   ++ L++I Q G    G+  + EA   IA  ++G+ R A  L
Sbjct: 169 TILSRCQKMHLKRIPETMIVDKLESISQAG----GIETSREALLPIARAAQGSLRDAESL 224

Query: 226 LRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259
              V          +++ E+   AL  L+ D + 
Sbjct: 225 YDYVIGLFP----NSLSPELVADALGLLSQDTLA 254


>gi|212696577|ref|ZP_03304705.1| hypothetical protein ANHYDRO_01115 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676433|gb|EEB36040.1| hypothetical protein ANHYDRO_01115 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 582

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 80/221 (36%), Gaps = 21/221 (9%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+   +  GQ    + LK  +++ +         LF G  G GKTT A++ A+ +    
Sbjct: 12  RPQKFSDVLGQERVVNVLKNQVKSGQISHAY----LFAGERGCGKTTCAKIFAKAINCLN 67

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHR-----LSIIVEEILYPAMEDFQLDLM 137
              S P      +    + +    DV+ +D         +  + E ++YP         +
Sbjct: 68  PIDSSP--CGICENCKSIEDESTMDVVEMDAASNRRIDDIRNLKETVVYPPNNLKYKVYI 125

Query: 138 VGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + E             + ++   S    I ATT +  +   +  R       N    +D+
Sbjct: 126 IDEAHMITREAFNALLKIMEEPPSHLVFILATTEIEKIPKTILSRVQ-KFEFNKIGRDDI 184

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
              +        +++  EA   I  +++G  R A  +L +V
Sbjct: 185 IKQIDIILNDRNISMEYEAKDLIVKKAKGAMRDALSILDQV 225


>gi|123479162|ref|XP_001322740.1| differentiation specific element binding protein [Trichomonas
           vaginalis G3]
 gi|121905592|gb|EAY10517.1| differentiation specific element binding protein, putative
           [Trichomonas vaginalis G3]
          Length = 694

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 43/274 (15%), Positives = 86/274 (31%), Gaps = 19/274 (6%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKV-FIEAAKARAEALDHVLFVGPPGLGKT 68
           +  S  +      RP+   +  G  +    +    I  +K   +A   VL  GPPG+GKT
Sbjct: 214 KESSATNLISEKYRPQNRNDLIGNKDLIEKIDNWLITFSKQDKKA---VLISGPPGIGKT 270

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           + A ++A+  G +    +   +     +  +   L +   L+       +          
Sbjct: 271 STALLLAKSRGYHVVEYNASDVRNKAAIEDIAKTLFNGKTLYSFTQQNTNNKQ------- 323

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF---YEI 185
                 D + G     R     L++F   +      +  +   ++    ++      +  
Sbjct: 324 -HAIIFDEIDGMSTGDRGGVQALAQFIEKSTFPIFCICNDRQSEKLKPILKYVLDIQFSA 382

Query: 186 EDLKTIVQR---GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            D K ++QR    +K  G+ +  +       +S G  R A   L+        AH KT  
Sbjct: 383 PDKKEMIQRVFEISKQEGIKIDRKNLFAAIDKSGGDMRSALNALQLWSSNCGNAHEKTAD 442

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFG 276
                             D  + R    +   + 
Sbjct: 443 EYATMDGFEAAKKLCTEKD-FEKRISLFMVDYYK 475


>gi|326512682|dbj|BAJ99696.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 808

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 51/255 (20%), Positives = 92/255 (36%), Gaps = 37/255 (14%)

Query: 8   LSRNVSQEDADISLLRPR---------TLEEFTGQVEACSNLKVFIEAAKARAE------ 52
           + + V+ ++    L+RP          T ++     +   +L+  +     R E      
Sbjct: 436 VGKKVTPDNEFEKLIRPTVVPASQIGVTFDDIGALTDIKESLQELVMLPLKRPELFNGGL 495

Query: 53  --ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLE 104
                 +L  GPPG GKT LA+ +A E G +F + S   I           + AL +   
Sbjct: 496 LKPCKGILLFGPPGTGKTMLAKALANEAGASFLNISLSTIMSKYYGDAEKTIRALFSLAT 555

Query: 105 DR--DVLFIDEIHRL---SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA 159
                ++F+DE+  L        E   P     + + M         +  +  R  ++AA
Sbjct: 556 KLAPAIIFVDEVDSLLGQRDQRNENELP--RRIKNEFMT---HWDGLLSNSNERILVLAA 610

Query: 160 TTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTP 219
           T R   L   +  RF   I +    +E  + I++   KL      +E      + +  T 
Sbjct: 611 TNRPFDLDEAIVRRFEHRIMVGLPTLESRELILK---KLLSKEKVEEGIDFKEL-ATSTE 666

Query: 220 RIAGRLLRRVRDFAE 234
             +G  L+ +   A 
Sbjct: 667 GYSGSDLKNLCVTAA 681


>gi|240282104|gb|EER45607.1| lon proteinase [Ajellomyces capsulatus H143]
          Length = 1080

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 47/254 (18%), Positives = 91/254 (35%), Gaps = 37/254 (14%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI   K R      +L FVGPPG+GKT++ + +AR L   +   S
Sbjct: 540 EDHYGLKDVKDRILEFIAVGKLRGTVEGKILCFVGPPGVGKTSIGKSIARALNREYYRFS 599

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ ++    +        
Sbjct: 600 VGGLTDVAEIKGHRRTYVGALPGRVIQALKKCQTENPLILIDEVDKIGRGHQGDPASALL 659

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V ++LS+   +        +  PL DR  + I L+ 
Sbjct: 660 ELLDPEQNSSFLD-------HYMDVPVDLSKVLFVCTANMTDTIPRPLLDRMEM-IELSG 711

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  ++   I +R       +  + +  +    +     I   L++     + V + K   
Sbjct: 712 YVADEKMAIAER---YLAPSAKEMSGLKDVDVTLEKDAI-EELIKSYCRESGVRNLKKQI 767

Query: 243 REIADAALLRLAID 256
            ++   A L++  D
Sbjct: 768 EKVYRKAALKIIQD 781


>gi|192455670|ref|NP_001122223.1| fidgetin-like protein 1 [Danio rerio]
 gi|190339286|gb|AAI62519.1| Wu:fb82h05 [Danio rerio]
 gi|220678852|emb|CAX12972.1| novel protein (zgc:193664) [Danio rerio]
          Length = 661

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 40/191 (20%), Positives = 71/191 (37%), Gaps = 14/191 (7%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLE-- 104
               +L  GPPG GKT + + +A + G  F S S   +           + AL       
Sbjct: 420 PPKGILLFGPPGTGKTLIGKCIACQSGATFFSISASSLTSKWVGEGEKMVRALFAIARCH 479

Query: 105 DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164
              V+FIDEI  L     +  + +    + + +V    +A S +    R  ++ AT R  
Sbjct: 480 QPAVIFIDEIDSLLSQRTDGEHDSSRRIKTEFLVQLDGAATSAE---DRILVVGATNRPQ 536

Query: 165 LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGR 224
            +    + R    + +   E E  + IV     L     +     E+    +GT   +G 
Sbjct: 537 EIDEAARRRLAKRLYIPLPEAEARRQIVT---NLMSHEKSQLGVDEMEKVVQGTEGFSGA 593

Query: 225 LLRRVRDFAEV 235
            + ++   A +
Sbjct: 594 DMTQLCREAAL 604


>gi|161609280|ref|NP_887984.2| DNA polymerase III subunits gamma and tau [Bordetella
           bronchiseptica RB50]
          Length = 698

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 52/273 (19%), Positives = 93/273 (34%), Gaps = 37/273 (13%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPR+ +   GQ      L   ++  +     L H  LF G  G+GKTTL++++A+ L   
Sbjct: 11  RPRSFDTLIGQDHVVRALTHALDTQR-----LHHAWLFTGTRGVGKTTLSRILAKSLNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAMEDFQL 134
              TS P     G   A       R V +++        +  ++ ++E+ +Y        
Sbjct: 66  NGITSKP----CGQCRACTEIDAGRFVDYLELDAASNRGVEEMTQLLEQAVYAPGAGRFK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             M+ E             ++++        I ATT    +   +  R  +   L     
Sbjct: 122 VYMIDEVHMLTGHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPP 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           + +   +Q       +     A   I   + G+ R A  L     D A    A  ++ E 
Sbjct: 181 DAIVGHLQAVLGEEQIGFEVPALRLIGQAAGGSMRDALSL----TDQAIAYSAGNLSEEA 236

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
               L  +    +      +R L  +A     G
Sbjct: 237 VRGMLGTIDQRHL------VRLLDALASGDAAG 263


>gi|144897128|emb|CAM73992.1| Holliday junction resolvasome, helicase subunit [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 52

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/34 (52%), Positives = 28/34 (82%)

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIP 332
           ++EPY++QQG IQRTPRGR+L    ++H+G++ P
Sbjct: 1   MVEPYLLQQGLIQRTPRGRMLSTAGFKHIGLNPP 34


>gi|118590526|ref|ZP_01547928.1| DNA polymerase III subunits gamma and tau [Stappia aggregata IAM
           12614]
 gi|118436989|gb|EAV43628.1| DNA polymerase III subunits gamma and tau [Stappia aggregata IAM
           12614]
          Length = 640

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 57/303 (18%), Positives = 90/303 (29%), Gaps = 65/303 (21%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+T E+  GQ      L+   E  +         +  G  G+GKTT A+++AR L
Sbjct: 41  ARKYRPKTFEDLVGQEPMVQTLENAFETGRIAQAW----MLTGVRGVGKTTTARILARGL 96

Query: 79  GVN-----------------------------FRSTSGPVIAKAGDLAALLTNLEDRD-- 107
                                                        D+  ++     R   
Sbjct: 97  NYEVPGVADRPTVKLTQEGTHCKAIMEGRHVDVIEMDAASHTGINDIREIIDAARYRPAT 156

Query: 108 ----VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
               V  IDE+H LS      L   +E+                         I ATT +
Sbjct: 157 ARYKVYIIDEVHMLSNAAFNGLLKTLEE------------------PPEHVKFIFATTEI 198

Query: 164 GLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAG 223
             +   +  R      L   +   L  +++R +   G+ ++DEA   IA    G+ R + 
Sbjct: 199 RKVPITVLSRCQ-RFDLRRIDQSKLIGLLRRISDAEGIQISDEALMLIARAGEGSARDSL 257

Query: 224 RLLRRVRDFAEVAHAKTITREIADAAL---LRLAIDKMGFDQLDLRYLTMIARNFGGGPV 280
            LL    D A    A  I  E     L    R  +  +    +  R    +        V
Sbjct: 258 SLL----DQAMAHGAGAIEAEDLRQMLGLADRARVIDLFGHIMAGRIEDALGELQAQYEV 313

Query: 281 GIE 283
           G +
Sbjct: 314 GAD 316


>gi|33595893|ref|NP_883536.1| DNA polymerase III subunits gamma and tau [Bordetella parapertussis
           12822]
 gi|33565972|emb|CAE36523.1| DNA polymerase III subunit Tau [Bordetella parapertussis]
          Length = 708

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 52/273 (19%), Positives = 93/273 (34%), Gaps = 37/273 (13%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPR+ +   GQ      L   ++  +     L H  LF G  G+GKTTL++++A+ L   
Sbjct: 11  RPRSFDTLIGQDHVVRALTHALDTQR-----LHHAWLFTGTRGVGKTTLSRILAKSLNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAMEDFQL 134
              TS P     G   A       R V +++        +  ++ ++E+ +Y        
Sbjct: 66  NGITSKP----CGQCRACTEIDAGRFVDYLELDAASNRGVEEMTQLLEQAVYAPGAGRFK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             M+ E             ++++        I ATT    +   +  R  +   L     
Sbjct: 122 VYMIDEVHMLTGHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPP 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           + +   +Q       +     A   I   + G+ R A  L     D A    A  ++ E 
Sbjct: 181 DAIVGHLQAVLGEEQIGFEVPALRLIGQAAGGSMRDALSL----TDQAIAYSAGNLSEEA 236

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
               L  +    +      +R L  +A     G
Sbjct: 237 VRGMLGTIDQRHL------VRLLDALASGDAAG 263


>gi|26554472|ref|NP_758406.1| cell division protein FtsH [Mycoplasma penetrans HF-2]
 gi|81747354|sp|Q8EUA6|FTSH_MYCPE RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|26454482|dbj|BAC44810.1| cell division protein FtsH [Mycoplasma penetrans HF-2]
          Length = 822

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 87/225 (38%), Gaps = 16/225 (7%)

Query: 40  LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA------KA 93
           LK     A   A     V+  GPPG GKT LA+ VA E  V F   SG           A
Sbjct: 326 LKRPDRYAAMGARVPKGVILYGPPGTGKTLLAKAVAGEAKVPFFQVSGSAFEDMLVGVGA 385

Query: 94  GDLAALLTNLEDR--DVLFIDEIHRL--SIIVEEILYPAMEDFQLDLMVGEGPSARSVKI 149
             +  L          ++FIDEI  +       E    ++ D  L+ ++ E     +   
Sbjct: 386 KRVRDLFNKAVKSAPAIIFIDEIDSVGSKRGKFETTAGSLADQTLNQLLAEMDGFNTKTG 445

Query: 150 NLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEA 207
                 ++AAT R+ +L + L    RF   I++N  +I++   I++  ++   ++ T + 
Sbjct: 446 ----VIVMAATNRLDVLDDALLRPGRFDRHIQVNLPDIKERVAILKIHSRNKNISETVDL 501

Query: 208 ACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
                     +      +L      A   + K+I  E  D A+ R
Sbjct: 502 EDIARRTPGFSGAQLENVLNEATLLAVRRNKKSIYTEELDEAIDR 546


>gi|255526409|ref|ZP_05393322.1| ATP-dependent metalloprotease FtsH [Clostridium carboxidivorans P7]
 gi|296188377|ref|ZP_06856768.1| ATP-dependent metallopeptidase HflB [Clostridium carboxidivorans
           P7]
 gi|255509915|gb|EET86242.1| ATP-dependent metalloprotease FtsH [Clostridium carboxidivorans P7]
 gi|296046998|gb|EFG86441.1| ATP-dependent metallopeptidase HflB [Clostridium carboxidivorans
           P7]
          Length = 606

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 55/256 (21%), Positives = 93/256 (36%), Gaps = 22/256 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEA-------LDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  GQ EA  +L   ++     ++            L VGPPG GKT LA+ VA E 
Sbjct: 163 TFNDVAGQEEAKESLNEIVDFLHKPSKYTEIGAKLPKGALLVGPPGTGKTLLAKAVAGEA 222

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  L    E     ++FIDEI  +    +  +    E
Sbjct: 223 NVPFFSLSGSDFVEMFVGVGASRVRDLFQQAEKNAPCIVFIDEIDAIGKSRDSKMGGNDE 282

Query: 131 -DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            +  L+ ++ E     S K       ++AAT R  +L   L    RF   + ++  +++ 
Sbjct: 283 REQTLNQLLAEMDGFDSSKG----VVILAATNRPEILDKALLRPGRFDRRVIVDKPDLKG 338

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            + I++   K   L             +         ++      A       + +E   
Sbjct: 339 REEILKVHGKNVKLDSDVNLGEIALATAGAVGADLANMVNEAALRAVRMGRDLVKQEDLF 398

Query: 248 AALLRLAIDKMGFDQL 263
            A+  +   K   D++
Sbjct: 399 EAVETVIAGKEKKDRI 414


>gi|242014230|ref|XP_002427794.1| spermatogenesis associated factor, putative [Pediculus humanus
           corporis]
 gi|212512263|gb|EEB15056.1| spermatogenesis associated factor, putative [Pediculus humanus
           corporis]
          Length = 446

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 72/187 (38%), Gaps = 20/187 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
             E+  G  +    L+  +E      E        A   +L  GPPG  KT +A+ +A E
Sbjct: 225 RWEDIGGLEDLKLKLRQCVEWPLKHKESFNKLGITAPKGLLMFGPPGCSKTMIAKALATE 284

Query: 78  LGVNFRSTSGPVI--AKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAM 129
             +NF S  GP +     G+    + N+  +       ++FIDE+  +           +
Sbjct: 285 SKLNFISVKGPELFNKWVGESERAVRNIFRKARQNAPSIIFIDELDAIGGERNLSSGSNV 344

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
           ++  L  ++ E        + L   T+IAAT R+  + + L     +      Y   ++ 
Sbjct: 345 QERVLAQILIE----MDGVVPLDNVTVIAATNRLDRIDSALLRPGRLDQSTQGYSGAEIV 400

Query: 190 TIVQRGA 196
            + +  A
Sbjct: 401 AVCREAA 407



 Score = 37.4 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 30/211 (14%), Positives = 71/211 (33%), Gaps = 22/211 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNF------RSTSGPVIAKAGDLAALLTNLEDR--DV 108
           +L  GP G GK++L ++++    ++       +  S        +L       + +   +
Sbjct: 5   ILIHGPNGCGKSSLMELISEYFSISTIKIDCSKIFSAISGETEKELHGSFERAKKKAPSI 64

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           + ID++H L        Y      +  ++         +        ++AAT+++  +  
Sbjct: 65  ILIDDLHLLCSTTNSSSY-----HEKRIIATLAFLIDQLSNLNLPIVVLAATSKIHQIDK 119

Query: 169 PLQ--DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
            L+   RFG  + +          I+     L  +      +    +       +   LL
Sbjct: 120 LLRSSSRFGKEVEITVPTNSQRFEILN--ILLLNVNHNLVESDVKTVADSTHGFVGADLL 177

Query: 227 RRV-----RDFAEVAHAKTITREIADAALLR 252
             V     R++       T++    + AL +
Sbjct: 178 SLVSQAMLRNYKTENKTGTVSANDFEWALNK 208


>gi|197294273|ref|YP_001798814.1| Putative peptidase [Candidatus Phytoplasma australiense]
 gi|171853600|emb|CAM11471.1| Putative peptidase [Candidatus Phytoplasma australiense]
          Length = 583

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 53/250 (21%), Positives = 93/250 (37%), Gaps = 24/250 (9%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKARAEALDH----VLFVGPPGLGKTTLAQVVA---RE 77
           +T+++F G  E    L+ +IE  K       +    +L  GPPG GKT LA+ +A   ++
Sbjct: 132 QTIDDFIGYEEVKDELQKYIEEVKTPPNKSQNLSRGILLYGPPGTGKTFLAKCLAGSVKD 191

Query: 78  LGVNFRSTSGPVIAK-----AGDLAALLTNLEDRDV--------LFIDEIHRLSIIVEEI 124
               F +T    + K     A  + +L    ++  +        +FIDEI  +     + 
Sbjct: 192 YAPFFITTGSDFVEKYVGVGAFRVRSLFEAAKNTAIVENKNYFFVFIDEIDAIGGKRSDD 251

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPL-QD-RFGIPIRLNF 182
                    L+ ++ E     S         +IAAT R   L   L +D R G  I L  
Sbjct: 252 NRNIEHHSTLNALLAEIDGFSSSDKESQPI-IIAATNRKDALDEALIRDGRLGKHIYLGL 310

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMR-SRGTPRIAGRLLRRVRDFAEVAHAKTI 241
            +++  K  +Q+       +  D  A    +  S  +P     L +  +    +  +   
Sbjct: 311 PDLKTTKEFMQKAFSSFITSPGDLEALSKVIHGSHFSPAQIMALTKEAKKRLSLQQSDGE 370

Query: 242 TREIADAALL 251
              I   A+ 
Sbjct: 371 KINIIYEAMD 380


>gi|56961888|ref|YP_173610.1| cell-division protein FtsH [Bacillus clausii KSM-K16]
 gi|56908122|dbj|BAD62649.1| cell-division protein FtsH [Bacillus clausii KSM-K16]
          Length = 662

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 61/246 (24%), Positives = 93/246 (37%), Gaps = 23/246 (9%)

Query: 26  TLEEFTG-----QV--EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
             ++  G     Q   E    LK   + A   A     VL VGPPG GKT LA+ VA E 
Sbjct: 163 KFKDVAGADEEKQELVEVVEFLKDPRKFAAIGARIPKGVLLVGPPGTGKTLLARAVAGEA 222

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG       V   A  +  L  N +     ++FIDEI  +       L    +
Sbjct: 223 GVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNSPCIIFIDEIDAVGRQRGAGLGGGHD 282

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E     + +       +IAAT R  +L   L    RF   I++N  +++
Sbjct: 283 EREQTLNQLLVEMDGFSANEG----IIIIAATNRADILDPALLRPGRFDRQIQVNAPDVK 338

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + +++  A+   L    +           +      LL      A     K I  E  
Sbjct: 339 GREEVLKVHARNKPLREEVKLDLIAIRTPGFSGADLENLLNEAALVAARNDKKEIGMEHI 398

Query: 247 DAALLR 252
           + A+ R
Sbjct: 399 EEAIDR 404


>gi|170591739|ref|XP_001900627.1| YME1 protein homolog [Brugia malayi]
 gi|158591779|gb|EDP30382.1| YME1 protein homolog, putative [Brugia malayi]
          Length = 673

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 52/255 (20%), Positives = 94/255 (36%), Gaps = 30/255 (11%)

Query: 26  TLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVA--- 75
           T ++  G  EA + L+  +          +  A     VL VGPPG GKT LA+ +A   
Sbjct: 182 TFKDVRGADEAKNELRGIVSYLRDPERYTQLGARLPKGVLLVGPPGTGKTLLAKAIAVVS 241

Query: 76  ----RELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRL-SIIVE 122
               +   V F   SG           A  +  L    +++   ++FIDEI  + S  V 
Sbjct: 242 VSIQKAPAVPFFQASGSEFDELFVGQGARRVRDLFARAKEKAPCIIFIDEIDSVGSKRVA 301

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRL 180
           + ++P      ++ ++ E     +         +I AT RV  L   L    RF + +++
Sbjct: 302 DAMHPHANQ-TVNQLLSEMDGFNTNDG----VIVIGATNRVKDLDPALLRPGRFDVQVQV 356

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            + ++E  K I+Q       +             +  T      ++ +    A       
Sbjct: 357 PYPDLEGRKEIIQLYLGRISVNDDVNEDVLARGTTGFTGAEIENMINQAALKAAGDGFMK 416

Query: 241 ITREIADAALLRLAI 255
           +T    + A  R+ +
Sbjct: 417 VTMAHMEEAKDRVMM 431


>gi|33592641|ref|NP_880285.1| DNA polymerase III subunits gamma and tau [Bordetella pertussis
           Tohama I]
 gi|33572287|emb|CAE41839.1| DNA polymerase III subunit Tau [Bordetella pertussis Tohama I]
 gi|332382058|gb|AEE66905.1| DNA polymerase III subunits gamma and tau [Bordetella pertussis CS]
          Length = 696

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 52/273 (19%), Positives = 93/273 (34%), Gaps = 37/273 (13%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPR+ +   GQ      L   ++  +     L H  LF G  G+GKTTL++++A+ L   
Sbjct: 11  RPRSFDTLIGQDHVVRALTHALDTQR-----LHHAWLFTGTRGVGKTTLSRILAKSLNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAMEDFQL 134
              TS P     G   A       R V +++        +  ++ ++E+ +Y        
Sbjct: 66  NGITSKP----CGQCRACTEIDAGRFVDYLELDAASNRGVEEMTQLLEQAVYAPGAGRFK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             M+ E             ++++        I ATT    +   +  R  +   L     
Sbjct: 122 VYMIDEVHMLTGHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPP 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           + +   +Q       +     A   I   + G+ R A  L     D A    A  ++ E 
Sbjct: 181 DAIVGHLQAVLGEEQIGFEVPALRLIGQAAGGSMRDALSL----TDQAIAYSAGNLSEEA 236

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
               L  +    +      +R L  +A     G
Sbjct: 237 VRGMLGTIDQRHL------VRLLDALASGDAAG 263


>gi|326523327|dbj|BAJ88704.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 575

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 63/284 (22%), Positives = 103/284 (36%), Gaps = 35/284 (12%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRT----LEEFTGQVEACSNL-------KVFIEAAKA 49
           MM     L R +S         RPR      ++  G  EA   L       +  +   K 
Sbjct: 260 MM---WFLQRQMSSGGNADKRRRPRKQQVGFDDVQGVDEAKEELVEIVSCLRGSLNYKKL 316

Query: 50  RAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNL 103
            A     VL  GPPG GKT LA+ VA E G+ F S S            A  +  L    
Sbjct: 317 GARLPRGVLLAGPPGTGKTLLAKAVAGEAGIPFFSVSASEFVEMFVGRGAARVRDLFKEA 376

Query: 104 ED--RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATT 161
           ++    ++FIDE+  +        +    D  L+ ++ E     S      +  ++AAT 
Sbjct: 377 KEAAPSIIFIDELDAVGGSR-GRSFNDERDQTLNQLLTEMDGFDSDV----KVIVMAATN 431

Query: 162 RVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTP 219
           R   L + L    RF   + +   ++E  + I+     L  + + +++     + +  TP
Sbjct: 432 RPKALDSALCRPGRFSRKVFVGVPDLEGRRKIL--AVHLRKVPLEEDSEIICDLVANVTP 489

Query: 220 RIAGRLLRRVRD----FAEVAHAKTITREIADAALLRLAIDKMG 259
            + G  L  + +     A       + RE    A+ R      G
Sbjct: 490 GLVGADLANIVNEAALLAARRGGDIVAREDIMDAIEREKYGVNG 533


>gi|307197462|gb|EFN78696.1| Paraplegin [Harpegnathos saltator]
          Length = 708

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 48/210 (22%), Positives = 89/210 (42%), Gaps = 14/210 (6%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA------KAGDLAALLTNLEDR--DVL 109
           L +GPPG GKT LA+ VA E  V F S +G           A  +  L    + R   ++
Sbjct: 278 LLLGPPGCGKTLLAKAVATEASVPFLSMNGSEFIEVFGGLGAARVRDLFKEAKKRAPSII 337

Query: 110 FIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           +IDEI  +     +     +   + +  + +        I+     ++A+T R  +L   
Sbjct: 338 YIDEIDAIGKKRSDNSLGIINS-ESERTLNQLLVEMDGMISKEDVIILASTNRADVLDKA 396

Query: 170 LQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
           L    RF   I ++F  +E+ + I +   K   +++ +E +      +  TP  +G  + 
Sbjct: 397 LLRPGRFDRHILIDFPTLEERQQIFETHLKK--ISLKNEPSKYSGYLAYLTPGFSGADIA 454

Query: 228 RVRDFAEVAHAKTITREIADAALLRLAIDK 257
            V + A +  A+   +++    L   AID+
Sbjct: 455 NVCNEAALHAARDKKKQVDSNDL-MYAIDR 483


>gi|329770145|ref|ZP_08261537.1| hypothetical protein HMPREF0433_01301 [Gemella sanguinis M325]
 gi|328837161|gb|EGF86801.1| hypothetical protein HMPREF0433_01301 [Gemella sanguinis M325]
          Length = 640

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 79/230 (34%), Gaps = 48/230 (20%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAK----ARAEALD------HVLFVGPPGLGKTTLAQVVA 75
            L+E  G  +  S ++ FI  A+     R + L+      H LF+G PG GKTT+A+++ 
Sbjct: 385 KLDEMIGLTKVKSEVREFIALAQMNKLRREKGLEDAPLTLHSLFLGNPGTGKTTVARLIG 444

Query: 76  R--------ELGVNFRSTSGPVIAK-----AGDLAALLTNLEDRDVLFIDEIHRLSIIVE 122
           +        +      ++   ++ K     A     +L +     VLFIDE + L+   E
Sbjct: 445 KILYQKGLIKSDNFVETSRSDLVGKYIGHTAKQTREVLESALGG-VLFIDEAYTLATGGE 503

Query: 123 EIL--------YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRF 174
                         MED + D+++      +S+   L                  L+ R 
Sbjct: 504 NDFGREAINEILKFMEDNREDIVIIFAGYTKSMMDFL-------------ETNEGLRSRI 550

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGR 224
                   Y ++ L  I   G              + A   +    I+  
Sbjct: 551 PNHFNFEDYTVDQLYKI---GLLELQNQGYKLNHEKYAEFVKHNYNISND 597


>gi|328787695|ref|XP_625214.3| PREDICTED: spermatogenesis-associated protein 5-like [Apis
           mellifera]
          Length = 793

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 53/248 (21%), Positives = 83/248 (33%), Gaps = 28/248 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
              +  GQ +    LK  IE      E            VL  GPPG  KT +A+ +A E
Sbjct: 528 RWSDIGGQKDLKLKLKQAIEWPLCHPEVFFRMGITPPKGVLMFGPPGCSKTMIAKALATE 587

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLED--RDVLFIDEIHRLS--IIVEEILYP 127
             VNF +  GP +           +  +          ++FIDEI  L            
Sbjct: 588 SKVNFLNIKGPELFSKWVGESEKAVREVFRKARQVSPSIIFIDEIDALGGERSSSVTAGS 647

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPL-----QDRFGIPIRLNF 182
            +++  L  ++ E          L   TL+AAT R   +   L      DR       ++
Sbjct: 648 NVQERVLAQLLTE----LDGVTALGSVTLVAATNRPDKIDKALLRPGRLDRIIYVPLPDY 703

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
              +++  I  R   +       +        S    + A      ++   E  +A  IT
Sbjct: 704 ETRQEIFDIKLRNMPIAEDVQIQDLVDLTEGYSGAEIQ-AICHEAAIKALEEDLNATIIT 762

Query: 243 REIADAAL 250
           +E   AAL
Sbjct: 763 KEHFKAAL 770


>gi|304373318|ref|YP_003856527.1| cell division protease FtsH [Mycoplasma hyorhinis HUB-1]
 gi|304309509|gb|ADM21989.1| cell division protease FtsH [Mycoplasma hyorhinis HUB-1]
          Length = 726

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 57/249 (22%), Positives = 101/249 (40%), Gaps = 27/249 (10%)

Query: 25  RTLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +   +  G VE    ++ F+       + A A A+    +L  GPPG GKT +A+  A E
Sbjct: 234 KRFSDVAGNVEVKEEIEEFVDYLRNPKKYASAGAKIPKGILLGGPPGTGKTLIAKATAGE 293

Query: 78  LGVNFRSTSGP------VIAKAGDLAALLT--NLEDRDVLFIDEIHRLSIIVEEILYPAM 129
             V F   S        V   A  +  L      E   ++FIDE+  +       +    
Sbjct: 294 ANVPFFFISASNFVELYVGVGAKRVRELFKDARAEAPAIIFIDELDAIGRSRGSGIGGGN 353

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
           ++ +  L   +        +  S   +IAAT R  +L   L    RF   + +N+ +I++
Sbjct: 354 DEREQTL--NQLLVEMDGMVENSGLLIIAATNRTDVLDPALMRPGRFDRTVIVNYPDIKE 411

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV----AHAKTITR 243
            + I++  AK   ++    ++ + +  ++ TP  +G  L  V + A +         IT 
Sbjct: 412 REEILKLHAKGKRIS----SSVQFSNVAKRTPGFSGAQLENVINEATLLSVREKTDVITN 467

Query: 244 EIADAALLR 252
           E  D A+ R
Sbjct: 468 EQIDEAIDR 476


>gi|302392147|ref|YP_003827967.1| ATPase AAA [Acetohalobium arabaticum DSM 5501]
 gi|302204224|gb|ADL12902.1| AAA ATPase central domain protein [Acetohalobium arabaticum DSM
           5501]
          Length = 339

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 88/233 (37%), Gaps = 25/233 (10%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRS 84
           R + E+ G     + L+ +   AK R      +LF GPPG GKT  AQ +A E+ +    
Sbjct: 109 RIMAEYYG----ANQLRGYNLNAKRR------ILFCGPPGCGKTMTAQSLANEINLPLLY 158

Query: 85  TSGPVI------AKAGDLAALLTNLED-RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
                +        A +L  +    E  R V+F DE   +    ++      E  +L   
Sbjct: 159 IHMDSLISSYLGDTASNLRKIFQYAEQGRWVIFFDEFDTIGKSRDDE----NEHGELKRA 214

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
           V      + +    +   LIAAT    LL N +  RF   +  +  +IE ++ ++++  +
Sbjct: 215 V--NTFLQMLDNFKTETLLIAATNHQHLLDNAIWRRFDEIVYFDKPDIEQIQKLLKKKLR 272

Query: 198 LTGLAVTDEAACEI--AMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
                +  + A E    M      RI    ++    +        + +E  + 
Sbjct: 273 TFKSEIDFKKASEELVGMSHAQIERICKDAIKYSILYDIEIVNGEVLKECIEE 325


>gi|257051274|ref|YP_003129107.1| AAA family ATPase, CDC48 subfamily [Halorhabdus utahensis DSM
           12940]
 gi|256690037|gb|ACV10374.1| AAA family ATPase, CDC48 subfamily [Halorhabdus utahensis DSM
           12940]
          Length = 754

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 65/295 (22%), Positives = 103/295 (34%), Gaps = 43/295 (14%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
           T E+  G  +    ++  IE      E            VL  GPPG GKT +A+ VA E
Sbjct: 189 TYEDIGGLDDELEQVREMIELPMRHPELFNQLGIEPPKGVLLHGPPGTGKTLMAKAVANE 248

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM 129
           +   F + SGP I           L  +    E+    ++FIDEI  ++   ++      
Sbjct: 249 IDAYFTTISGPEIMSKYYGESEEQLREMFDEAEENAPAIVFIDEIDSIAPKRDDTSGDVE 308

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                  +V +  S            +I AT R+  L   L+   RF   I +   + + 
Sbjct: 309 RR-----VVAQLLSLMDGLEERGDVIVIGATNRLDALDPALRRGGRFDREIEIGVPDKKG 363

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            K ++Q   +   L        E A R   T    G  L ++     +   + I  EI  
Sbjct: 364 RKEVLQVHTRGMPLN-DGIDIDEYAER---THGFVGADLEQLAKEGAMNALRRIRPEIDL 419

Query: 248 AALLRLAIDKMGFDQLDLRYLTMI---ARNFGGGPVGIETISAGLSEPRDAIEDL 299
            A           D++D   L  +     +F     GIE   + L E    + D+
Sbjct: 420 EA-----------DEIDAEILESLEITEDDFKAALKGIEP--SALREVFVEVPDV 461



 Score = 46.2 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 8/74 (10%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLED 105
           E+   VL  GPPG GKT LA+ VA E   NF S  GP +           +  + +   +
Sbjct: 496 ESAKGVLLYGPPGTGKTLLAKAVANEAQSNFISVKGPELLNKYVGESEKGVREVFSKARE 555

Query: 106 R--DVLFIDEIHRL 117
               V+F DEI  +
Sbjct: 556 NAPTVVFFDEIDSI 569


>gi|332669078|ref|YP_004452086.1| ATP-dependent metalloprotease FtsH [Cellulomonas fimi ATCC 484]
 gi|332338116|gb|AEE44699.1| ATP-dependent metalloprotease FtsH [Cellulomonas fimi ATCC 484]
          Length = 684

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 60/248 (24%), Positives = 93/248 (37%), Gaps = 27/248 (10%)

Query: 26  TLEEFTGQVEACSNLK----VFIEAAKARA---EALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  EA   L+       E AK +A   +    VL  GPPG GKT LA+ VA E 
Sbjct: 166 TFADVAGVDEALEELQEIKEFLSEPAKFQAVGAKIPKGVLLYGPPGTGKTLLARAVAGEA 225

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG       V   A  +  L    ++    ++F+DEI  +       L    +
Sbjct: 226 GVPFYSISGSDFVEMFVGVGASRVRDLFQQAKENSPAIIFVDEIDAVGRHRGAGLGGGHD 285

Query: 131 DFQLD----LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
           + +      L+  +G   ++  I       IAAT R  +L   L    RF   + +   +
Sbjct: 286 EREQTLNQMLVEMDGFDVKTNVIL------IAATNRPDILDPALLRPGRFDRQVAVEPPD 339

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +   + I+Q  A+   +A   +           T      +L          +A+ I   
Sbjct: 340 LRGRERILQVHAQGKPMAPHVDLVGVARRTPGFTGADLANVLNEAALLTARKNAQVIDDH 399

Query: 245 IADAALLR 252
             D A+ R
Sbjct: 400 ALDEAIDR 407


>gi|319942796|ref|ZP_08017098.1| hypothetical protein HMPREF9464_02317 [Sutterella wadsworthensis
           3_1_45B]
 gi|319803606|gb|EFW00562.1| hypothetical protein HMPREF9464_02317 [Sutterella wadsworthensis
           3_1_45B]
          Length = 807

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 62/279 (22%), Positives = 104/279 (37%), Gaps = 27/279 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG---VNF 82
           TL++F+ Q E  S L  +++ A A      +VL  GPPG GKT LA+++A+E G      
Sbjct: 330 TLKDFSHQPEIESYLLPYLKKALAEHRQGVNVLLYGPPGTGKTELARLLAKETGSALYEV 389

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED---FQLDLMVG 139
              SGP      D    LT           E    +     +L    +D     L  + G
Sbjct: 390 SPKSGPDNGYRSDKNNRLTR------WHCGERLFANTSQTMLLLDEADDVCNAGLISVFG 443

Query: 140 EGPSARSVKINLS------RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
              +AR+ K  L+          I A      +   L  RF + + +     E ++  + 
Sbjct: 444 MATTARTNKAELNKTLETAPVPTIWACNSTESMDPALMRRFDVVLEIPI-PPESVRRRIC 502

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R A     AV++      A     +P +A R    V+  +    A     ++ +A L+  
Sbjct: 503 RKA--FDGAVSEHFIDRCAACEELSPGVAARTAGVVKTLSGEVDADETAEKLINATLMAQ 560

Query: 254 AIDKM--GFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
              ++    + +   Y T     F      ++ I+ GL 
Sbjct: 561 FGKELPAALNNVSDMYSTA----FVNTDADLDAIAEGLK 595


>gi|300865996|ref|ZP_07110730.1| vesicle-fusing ATPase [Oscillatoria sp. PCC 6506]
 gi|300335987|emb|CBN55888.1| vesicle-fusing ATPase [Oscillatoria sp. PCC 6506]
          Length = 611

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 58/266 (21%), Positives = 95/266 (35%), Gaps = 34/266 (12%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVARE 77
           +L++  G  +    LK  +     R E L          VL VGPPG GKT  A+ +A E
Sbjct: 86  SLQDVGGLGQVLKELKELVAIPLKRPELLEKLGLEPTKGVLLVGPPGTGKTLTARALADE 145

Query: 78  LGVNFRSTSGPVIAKA------GDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
           LGVN+ + +GP +           L A+          ++FIDEI  L+    +     +
Sbjct: 146 LGVNYIALAGPEVMSKYYGEAEQKLRAIFEKAAKNAPCLVFIDEIDSLAPDRSK-----V 200

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
           E      +V +  S            L+AAT R   L   L+   RF   +     + + 
Sbjct: 201 EGEVEKRLVAQLLSLMDGFAQTKGVILLAATNRPDHLDPALRRPGRFDREVHFPVPDCQG 260

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
              I+Q    +   +   +    ++  +       G  L+ V   A  +  +    E   
Sbjct: 261 RLEILQ----ILTRSQPLDETVNLSAIADLAVGFVGADLKAVCQKAAYSALRRHIPE--- 313

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIAR 273
             L  +  D M     D  +L  +  
Sbjct: 314 --LEAVIPDTMSVTHSD--FLQALKE 335



 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 49/198 (24%), Positives = 75/198 (37%), Gaps = 21/198 (10%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARELG 79
           EE  G       L+  +E A    E        A   +L  GPPG GKT LA+ VA +  
Sbjct: 354 EEIGGLESIKQTLRESVEGALLHPELYRQTKAIAPRGILLWGPPGTGKTLLAKAVASQAR 413

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMED 131
            NF   +GP +      A    +  L T        V+FIDEI  L+             
Sbjct: 414 ANFICVNGPELLSRWVGASEQAVRELFTKARQASPCVVFIDEIDSLAPARGRHSGD---S 470

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
              D +VG+  +      N +   LI AT R  ++   L    R  + ++++   +E+  
Sbjct: 471 GVSDRVVGQLLTELDGLHNSANVLLIGATNRPEIIDPALLRSGRLDLQLKVDLPNLENRL 530

Query: 190 TIVQRGAKLTGLAVTDEA 207
            I++   +   L   D  
Sbjct: 531 AILEIHNQDRPLERVDLG 548


>gi|226226518|ref|YP_002760624.1| DNA polymerase III gamma and tau subunit [Gemmatimonas aurantiaca
           T-27]
 gi|226089709|dbj|BAH38154.1| DNA polymerase III gamma and tau subunit [Gemmatimonas aurantiaca
           T-27]
          Length = 598

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 64/282 (22%), Positives = 93/282 (32%), Gaps = 41/282 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RPR       Q    + LK     A AR       L  GP G GKTTLA+V+A 
Sbjct: 4   ALARKYRPRNFATVAVQNHVANTLK----GAIARGRVAHGYLLCGPRGTGKTTLARVLAM 59

Query: 77  ELGVNFR---STSGPVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILY-P 127
            L    R      G      G    + +     DV+ ID      +     + E  +Y P
Sbjct: 60  ALNCERRGEPELQGEPCGHCGSCQRIWSGSASLDVVEIDAASNRGVDDARELRERAMYAP 119

Query: 128 AMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLL---TNPLQDRFG 175
           + +D     +V E             + ++    R   + ATT    +     P+  R  
Sbjct: 120 SGDDRYKVYIVDEAHMLTREAWNALLKILEEPPPRVVFVFATTEPQKIAQQAAPILSRLQ 179

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLT---GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
                          I +R A +     +A   +A   IA  + G  R A  L  +V   
Sbjct: 180 RFDLKRI----GPAEIRERLAAVLTEEQVAFEADALGMIARAADGGLRDALSLTDQVLSL 235

Query: 233 AEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARN 274
            E A    +T +    AL  +  D+       L  L M+A  
Sbjct: 236 GESA---AVTADRVQTALGLIPDDEY------LALLDMVAER 268


>gi|222629017|gb|EEE61149.1| hypothetical protein OsJ_15108 [Oryza sativa Japonica Group]
          Length = 588

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 67/297 (22%), Positives = 107/297 (36%), Gaps = 45/297 (15%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRT----LEEFTGQVEACSNL----KVFIEAA----- 47
           MM     + R +S         RPR      ++  G  EA   L    ++ IE A     
Sbjct: 263 MM---WFIQRQMSAGGGAEKRRRPRKQRVGFDDVQGVDEAKEELVEISRLIIEVAMVVSC 319

Query: 48  -------KARAEALD-HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKA 93
                  K     L   VL VGPPG GKT LA+ VA E G+ F S S            A
Sbjct: 320 LHGSLNYKKLGAKLPRGVLLVGPPGTGKTLLARAVAGEAGIPFFSVSASEFVEVFVGRGA 379

Query: 94  GDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINL 151
             +  L    ++    ++FIDE+  +        +    D  L+ ++ E     S     
Sbjct: 380 ARVRDLFKEAKEAAPSIIFIDELDAVGGSR-GRSFNDERDQTLNQLLTEMDGFDSDM--- 435

Query: 152 SRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAAC 209
            +  ++AAT R   L   L    RF   + +   ++E  + I+     L  + + ++   
Sbjct: 436 -KVIVMAATNRPKALDPALCRPGRFSRKVLVGVPDLEGRRNIL--AVHLRDVPLEEDPEI 492

Query: 210 EIAMRSRGTPRIAGRLLRRVRD----FAEVAHAKTITREIADAALLRLAIDKMGFDQ 262
              + +  TP + G  L  + +     A      T+ RE    A+ R      G  +
Sbjct: 493 ICDLVASLTPGLVGADLANIVNEAALLAARRGGNTVAREDIMDAIEREKYGVNGRQE 549


>gi|75906293|ref|YP_320589.1| AAA ATPase [Anabaena variabilis ATCC 29413]
 gi|75700018|gb|ABA19694.1| AAA ATPase, central region [Anabaena variabilis ATCC 29413]
          Length = 613

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 59/229 (25%), Positives = 87/229 (37%), Gaps = 31/229 (13%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALD--------HVLFVGPPGLGKTTLAQVVARE 77
           +L++  G  E    LK  I     R + L          VL VGPPG GKT  A+ +A E
Sbjct: 91  SLKDVGGLGEVVKELKELIAIPLKRPDLLAKLGLEPTRGVLLVGPPGTGKTLTARGLAEE 150

Query: 78  LGVNFRSTSGP-VIAK-----AGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
           LGVN+ +  GP VI+K        L  +          ++FIDEI  L+         A+
Sbjct: 151 LGVNYIALVGPEVISKYYGEAEQRLRGIFEKAAKNAPCIIFIDEIDSLAPDR-----SAV 205

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE- 186
           E      +V +  S      +     ++AAT R   L   L+   RF   ++    +++ 
Sbjct: 206 EGEVEKRLVAQLLSLMDGFSHSQGVIVLAATNRPDHLDPALRRPGRFDREVQFRVPDVKG 265

Query: 187 --DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGT-----PRIAGRLLRR 228
             D+  I+ R   L      D  A                + A   LRR
Sbjct: 266 RRDILQILTRAMPLEDTVDLDAIAERSVGFVGSDLKALCQKAAYTALRR 314



 Score = 50.1 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 45/185 (24%), Positives = 69/185 (37%), Gaps = 23/185 (12%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARELG 79
           ++  G       L+  +E A    E        A   +L  GPPG GKT LA+ VA +  
Sbjct: 359 DDIGGLDTIKQTLRESVEGALLYPELYLQTKALAPKGILLWGPPGTGKTLLAKAVASQAR 418

Query: 80  VNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
            NF   +GP +             +L A     E   V+FIDEI  L+            
Sbjct: 419 ANFIGVNGPELLSRWVGASEQAVRELFAKARQAEP-CVVFIDEIDTLAPARGSFSGD--- 474

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
               D +VG+  +        S   +I AT R   L   L    R  + ++++  ++   
Sbjct: 475 SGVSDRVVGQLLTELDGIEVGSTILVIGATNRPDALDPALLRAGRLDLQMKVDLPDLASR 534

Query: 189 KTIVQ 193
             I+Q
Sbjct: 535 LAILQ 539


>gi|88857873|ref|ZP_01132515.1| putative DnaX, DNA polymerase III, gamma/tau subunits
           [Pseudoalteromonas tunicata D2]
 gi|88819490|gb|EAR29303.1| putative DnaX, DNA polymerase III, gamma/tau subunits
           [Pseudoalteromonas tunicata D2]
          Length = 820

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 54/173 (31%), Gaps = 38/173 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+   +  GQ      L   +       + L H  LF G  G+GKTT+A++ A+ L   
Sbjct: 11  RPQNFHQLVGQEHVKQALVNALT-----QQRLHHAYLFTGTRGVGKTTIARIFAKSLNCE 65

Query: 82  ------------------------FRSTSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                             K  D   +L N++         V  I
Sbjct: 66  LGITATPCGQCSACLDIEAGRYIDLLEIDAASRTKVEDTREILDNVQYAPTRGRYKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTR 162
           DE+H LS      L   +E+    +  ++      +     LSR      +  
Sbjct: 126 DEVHMLSKHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFNLSAL 178


>gi|254579010|ref|XP_002495491.1| ZYRO0B12606p [Zygosaccharomyces rouxii]
 gi|238938381|emb|CAR26558.1| ZYRO0B12606p [Zygosaccharomyces rouxii]
          Length = 777

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 80/230 (34%), Gaps = 29/230 (12%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLE--DRDV 108
           +L  GPPG GKT L + VA     +  + +GP I           L  +    +     +
Sbjct: 276 ILLHGPPGTGKTMLLRCVANTTDAHILTINGPSIVSKYLGETEATLREIFDEAKLYQPSI 335

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +FIDEI  ++          +E   +  ++              R  ++AAT R   +  
Sbjct: 336 IFIDEIDSIAPNRASDDSGEVESRVVATLLTL----MDGMGAAGRLVVVAATNRPNNIDP 391

Query: 169 PLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
            L+   RF   + +   ++E+   I+ +  +         +A +I   +  T    G  L
Sbjct: 392 ALRRPGRFDQEVEIAIPDVEERIDILMKQFERMSSEKHSLSAEDIKEVAAKTHGYVGADL 451

Query: 227 RRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFG 276
             +             RE     + R+  D    D++D   L +   +  
Sbjct: 452 TAL------------CRESVMKTIQRVLGD---DDKIDESLLKVSREDLD 486



 Score = 53.5 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/136 (27%), Positives = 55/136 (40%), Gaps = 30/136 (22%)

Query: 12  VSQEDADISLL--RPRTLEEFT------------GQVEACSNLKVFIEA--------AKA 49
           VS+ED D ++L  RP  + E              GQ      +K  I+         A+ 
Sbjct: 480 VSREDLDNAMLEIRPSAMREIFLEMPKVYWTDIGGQDVLKRKMKEMIQLPLEASETFARL 539

Query: 50  RAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR- 106
              A   VL  GPPG  KT  A+ +A E GVNF +  GP I     G+    +  +  + 
Sbjct: 540 GVSAPKGVLLYGPPGCSKTLTAKALATESGVNFLAVKGPEIFSKYVGESERAIREIFHKA 599

Query: 107 -----DVLFIDEIHRL 117
                 ++F DEI  +
Sbjct: 600 RSAAPSIIFFDEIDAI 615


>gi|154296359|ref|XP_001548611.1| hypothetical protein BC1G_13006 [Botryotinia fuckeliana B05.10]
 gi|150843464|gb|EDN18657.1| hypothetical protein BC1G_13006 [Botryotinia fuckeliana B05.10]
          Length = 960

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 61/290 (21%), Positives = 108/290 (37%), Gaps = 38/290 (13%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKARAEA----------LDHVLFVGPPGLGKTTLAQVV 74
              E+     E    LK     +  R EA          +  +L  GPPG GKT LA+ V
Sbjct: 644 TKFEDVHAPKETVEALKTLTSLSLIRPEAFTYGVLATDKMPGLLLYGPPGTGKTLLAKAV 703

Query: 75  ARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILY 126
           A+E G      SG  +          ++ A+ +  +     V+FIDE   +     +   
Sbjct: 704 AKESGATVLEISGAEVNDMYVGEGEKNVRAIFSLAKKLSPCVVFIDEADAIFAARGDTKR 763

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
                  ++  + E         +LS F ++ AT R   L   +  R    + ++    +
Sbjct: 764 STAHREMINQFLREW----DGMNDLSAFIMV-ATNRPFDLDEAVLRRLPRRLLVDLPVEK 818

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           D ++I+    K+       + +  +A  ++ TP  +G  L+ +   A +A      RE  
Sbjct: 819 DRESIL----KIHLKDEVIDPSVSLAELAKNTPFYSGSDLKNLSVAAALA----CIREEN 870

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAI 296
           + A          +   + R LT   ++F      +E ISA +SE    +
Sbjct: 871 ELATKHEGDTP--YTYPEKRILT--KQHFDKA---MEEISASISEDMSTL 913


>gi|21231166|ref|NP_637083.1| cell division protein [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66768826|ref|YP_243588.1| cell division protein [Xanthomonas campestris pv. campestris str.
           8004]
 gi|188991941|ref|YP_001903951.1| Cell division protein FtsH (ATP-dependent zinc metallopeptidase)
           [Xanthomonas campestris pv. campestris str. B100]
 gi|21112805|gb|AAM41007.1| cell division protein [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66574158|gb|AAY49568.1| cell division protein [Xanthomonas campestris pv. campestris str.
           8004]
 gi|167733701|emb|CAP51906.1| Cell division protein FtsH (ATP-dependent zinc metallopeptidase)
           [Xanthomonas campestris pv. campestris]
          Length = 648

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 52/246 (21%), Positives = 87/246 (35%), Gaps = 23/246 (9%)

Query: 26  TLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  EA   +   +       +  K   +    VL VGPPG GKT LA+ +A E 
Sbjct: 165 TFADVAGCDEAKEEVGELVDFLRDPTKFTKLGGKIPRGVLMVGPPGTGKTLLAKAIAGEA 224

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  +    +     ++FIDEI  +       L    +
Sbjct: 225 KVPFFSISGSDFVEMFVGVGASRVRDMFEQAKKHAPCIIFIDEIDAVGRHRGAGLGGGHD 284

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E       +       +IAAT R  +L   L    RF   + +   +++
Sbjct: 285 EREQTLNQLLVEMDGFEGGEG----VIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVK 340

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++   +   LA               +      L      FA   + K +  +  
Sbjct: 341 GREQILRVHMRKLPLADDVVPLVIARGTPGFSGADLANLANEAALFAARGNEKEVRMDHF 400

Query: 247 DAALLR 252
           D A  +
Sbjct: 401 DRARDK 406


>gi|330816268|ref|YP_004359973.1| FtsH endopeptidase [Burkholderia gladioli BSR3]
 gi|327368661|gb|AEA60017.1| FtsH endopeptidase [Burkholderia gladioli BSR3]
          Length = 629

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 51/249 (20%), Positives = 90/249 (36%), Gaps = 23/249 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAA-------KARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G  EA   +   ++         K        VL VGPPG GKT LA+ +A E 
Sbjct: 152 NFSDVAGCDEAKEEVSELVDFLRDPQKFQKLGGRIPRGVLLVGPPGTGKTLLARAIAGEA 211

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  +    +     ++FIDEI  +       +    +
Sbjct: 212 KVPFFSISGSDFVEMFVGVGAARVRDMFEQAKKHAPCIVFIDEIDAVGRHRGAGMGGGND 271

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  M+ E     +     S   +IAAT R  +L   L    RF   + +   +I 
Sbjct: 272 EREQTLNQMLVEMDGFEAN----SGVIVIAATNRSDVLDKALLRPGRFDRQVYVGLPDIR 327

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++   +   ++   +AA         +      L+     FA     + +  +  
Sbjct: 328 GREQIMRVHLRKVPISNDVDAAVLARGTPGFSGADLANLVNEAALFAARRGKRIVEMQDF 387

Query: 247 DAALLRLAI 255
           + A  ++ +
Sbjct: 388 EDAKDKIFM 396


>gi|325524577|gb|EGD02604.1| FtsH endopeptidase [Burkholderia sp. TJI49]
          Length = 471

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 53/251 (21%), Positives = 91/251 (36%), Gaps = 27/251 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAA-------KARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G  EA   +   ++         K        VL VGPPG GKT LA+ +A E 
Sbjct: 152 NFSDVAGCDEAKEEVSELVDFLRDPQKFQKLGGRIPRGVLLVGPPGTGKTLLARAIAGEA 211

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  +    +     ++FIDEI  +       +    +
Sbjct: 212 KVPFFSISGSDFVEMFVGVGAARVRDMFEQAKKHAPCIVFIDEIDAVGRHRGAGMGGGND 271

Query: 131 DFQLD----LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
           + +      L+  +G  A S  I      +IAAT R  +L   L    RF   + +   +
Sbjct: 272 EREQTLNQLLVEMDGFEANSGVI------VIAATNRSDVLDKALLRPGRFDRQVYVGLPD 325

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           I   + I++   +   +A   +AA         +      L+     FA     + +  +
Sbjct: 326 IRGREQIMRVHLRKVPIANDVDAAVIARGTPGFSGADLANLVNEAALFAARRGKRIVEMQ 385

Query: 245 IADAALLRLAI 255
             + A  ++ +
Sbjct: 386 DFEDAKDKIFM 396


>gi|260182189|gb|ACX35616.1| AAA domain containing 2 isoform CRA_a [Salmo salar]
          Length = 1335

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 43/186 (23%), Positives = 71/186 (38%), Gaps = 26/186 (13%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVN------FRSTSGPVIAK-AGDLAALL 100
           K R +     LF GPPG GKT +A+ +A E          F       ++K  G+    L
Sbjct: 353 KFRIQPPRGCLFYGPPGTGKTLVARALANECSQGERKVAFFMRKGADCLSKWVGESERQL 412

Query: 101 TNLEDR------DVLFIDEIHRLSII---VEEILYPAMEDFQLDLMVGEGPSARSVKINL 151
             L D+       ++F DEI  L+ +    ++ ++ ++    L LM G       V I  
Sbjct: 413 RLLFDQAYQMRPAIIFFDEIDGLAPVRSSRQDQIHSSIVSTLLALMDGLDSRGEVVVI-- 470

Query: 152 SRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAAC 209
                  AT R+  +   L+   RF         + E  K I++   +      +D    
Sbjct: 471 ------GATNRLDSIDPALRRPGRFDREFLFGLPDRESRKDILKIHTRQWNPTPSDPFLE 524

Query: 210 EIAMRS 215
           E+A + 
Sbjct: 525 ELADKC 530


>gi|259483400|tpe|CBF78760.1| TPA: Cell division control protein 48
           [Source:UniProtKB/Swiss-Prot;Acc:Q5AWS6] [Aspergillus
           nidulans FGSC A4]
          Length = 814

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 47/258 (18%), Positives = 85/258 (32%), Gaps = 17/258 (6%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLED 105
           +    +L  GPPG GKT +A+ VA E G  F   +GP I          +L       E 
Sbjct: 248 KPPRGILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEK 307

Query: 106 RD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
               ++FIDEI  ++   E+             +V +  +        S   ++AAT R 
Sbjct: 308 NSPAIIFIDEIDSIAPKREK-----TNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRP 362

Query: 164 GLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRI 221
             +   L+   RF   + +   +      I+    K   L    +     A         
Sbjct: 363 NSIDPALRRFGRFDREVDIGIPDPTGRLEILSIHTKNMKLGEDVDLETIAAETHGYVGSD 422

Query: 222 AGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVG 281
              L        +    K    ++ +  +    +D +G    + RY   ++       V 
Sbjct: 423 LASLCSEAAM--QQIREKMDLIDLDEDTIDAEVLDSLGVTMENFRYALGVSNPSALREVA 480

Query: 282 IETISAGLSEPRDAIEDL 299
           +  +     E    +E++
Sbjct: 481 VVEVPNVRWEDIGGLEEV 498



 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 46/219 (21%), Positives = 83/219 (37%), Gaps = 16/219 (7%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--V 108
           VLF GPPG GKT LA+ VA E   NF S  GP +          ++  +          V
Sbjct: 527 VLFYGPPGTGKTMLAKAVANECAANFISVKGPELLSMWFGESESNIRDIFDKARAAAPCV 586

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +F+DE+  ++      +  A      D +V +  +      +     +I AT R   L  
Sbjct: 587 VFLDELDSIAKSRGGSVGDA--GGASDRVVNQLLTEMDGMTSKKNVFVIGATNRPEQLDA 644

Query: 169 PLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
            L    R    + +   +    + I++   + T +A   +     +     +    G + 
Sbjct: 645 ALVRPGRLDTLVYVPLPDQASREGILKAQLRKTPVASDVDIEFIASKTHGFSGADLGFVT 704

Query: 227 RRVRDFA--EVAHAKTITREIADAALL--RLAIDKMGFD 261
           +R    A  E   A+   ++  +AA    ++  ++ G D
Sbjct: 705 QRAVKLAIKESISAEIERQKQREAAGEDVKMEDEEEGED 743


>gi|111035803|emb|CAL29430.1| DNA polymerase III tau subunit [Wolbachia endosymbiont of
           Onchocerca volvulus]
          Length = 494

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 51/230 (22%), Positives = 84/230 (36%), Gaps = 31/230 (13%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP + ++  GQ      LK     A    +    +L  G  G+GKTT A+++A  L  + 
Sbjct: 8   RPDSFKDLIGQDVLVRILK----NAFTLNKIPQSILLSGSSGVGKTTTARIIALCLNCS- 62

Query: 83  RSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLS-----IIVEEILYPAMEDFQLD 135
               GP     G     L   N    DV+ ID     S     +I+E I Y  +      
Sbjct: 63  ---LGPTFEPCGLCENCLAIKNSNHSDVIEIDAASHTSIEDIKVILENICYLPISSKFKI 119

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             ++++   S    I ATT +  +   +  R     R + Y+I 
Sbjct: 120 YIIDEVHMLSGSAFNALLKTLEEPPSSVKFILATTEIKKMPITIIARCQ---RFDLYKI- 175

Query: 187 DLKTIVQR---GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
               IV R    A+     + + A   IA     + R A  L+ +   ++
Sbjct: 176 PATKIVGRLNDIAQKENYLIENRALELIAHHCSNSMRNALFLMNQAMLYS 225


>gi|90961309|ref|YP_535225.1| ATPases of the AAA+ class [Lactobacillus salivarius UCC118]
 gi|90820503|gb|ABD99142.1| ATPases of the AAA+ class [Lactobacillus salivarius UCC118]
          Length = 535

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 73/203 (35%), Gaps = 37/203 (18%)

Query: 55  DHVLFVGPPGLGKTTLAQVVAR--------ELGVNFRSTSGPVIAK-AGDLAALLTNLED 105
            H++F GPPG GKTT+A++VAR        E      +    +  K  GDL+  +    D
Sbjct: 311 HHMIFEGPPGTGKTTVARIVARLFYALGILENTTVIETKRNELEGKWVGDLSGKINEKVD 370

Query: 106 ---RDVLFIDEIHRL----------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152
                VLFIDE H+L            +++  +     D +  + +  G +    +    
Sbjct: 371 SALGGVLFIDEAHQLYNKEDPYDKGKQVIQAFVPRLENDGEKFIAIIAGYTKEMEEFL-- 428

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIA 212
                            L  RF   I    YE + +  IV    K   +   ++    +A
Sbjct: 429 ------------KFDPGLASRFQHKIIFESYEPQVVAQIVVNILKKNKIEFNEKYVKAVA 476

Query: 213 MRS-RGTPRIAGRLLRRVRDFAE 234
           +      P       R  R++A+
Sbjct: 477 INLYDQIPDDKKSNARWARNYAQ 499


>gi|325120061|emb|CBZ55613.1| hypothetical protein NCLIV_060380 [Neospora caninum Liverpool]
          Length = 415

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 60/292 (20%), Positives = 101/292 (34%), Gaps = 36/292 (12%)

Query: 3   DREGLLSRNVSQEDADISLL----RPRTLEEF--TGQVEACSNLKVFIEAA--------- 47
           D   +L +  ++ D+ +  +    RP+  EE+   G       ++  IEA          
Sbjct: 131 DSYLVLDKLPAEYDSRVKAMEVDERPQ--EEYNDVG--GLDKQIQELIEAIVLPMTHKER 186

Query: 48  --KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAAL 99
             K        VL  GPPG GKT LA+  A +    F   +GP +        A  +   
Sbjct: 187 FEKIGIRPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKMVRDA 246

Query: 100 LTNLEDR--DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLI 157
               +++   ++FIDE+  +     +       + Q  ++            +  R  +I
Sbjct: 247 FELAKEKAPAIIFIDELDAIGTKRFDSELSGDREVQRTMLELLNQLDGFSSDD--RIKVI 304

Query: 158 AATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRS 215
           AAT R  +L   L    R    I L     E  + I+Q  A+   +   D    E+A   
Sbjct: 305 AATNRPDVLDPALLRSGRLDRKIELPHPNEEARERILQIHARKMNVNKQDVNFRELA--- 361

Query: 216 RGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRY 267
           R T    G  L+ V   A +   +    E+     +          +  L Y
Sbjct: 362 RSTDDFNGAQLKAVCVEAGMVALRRGATELCHEDFVEGVAQVQAKKKSSLNY 413


>gi|166031091|ref|ZP_02233920.1| hypothetical protein DORFOR_00776 [Dorea formicigenerans ATCC
           27755]
 gi|166028938|gb|EDR47695.1| hypothetical protein DORFOR_00776 [Dorea formicigenerans ATCC
           27755]
          Length = 607

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 54/229 (23%), Positives = 85/229 (37%), Gaps = 27/229 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G+ EA  NL   +E         +  A     +L VGPPG GKT LA+ VA E 
Sbjct: 167 RFRDVAGEDEAKENLSEIVEYLHNPARYKEIGASMPKGILLVGPPGTGKTMLAKAVAGEA 226

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG           A  +  L    +++   ++FIDEI  +    +  +    E
Sbjct: 227 NVPFFSMSGSEFVEMFVGMGASKVRDLFQQAKEKAPCIVFIDEIDAIGKKRDGQIGGNDE 286

Query: 131 -DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            +  L+ ++ E               ++AAT R   L   L    RF   + +   +++ 
Sbjct: 287 REQTLNQLLTEMDGFEDNTG----VIILAATNRPESLDPALLRPGRFDRRVPVELPDLKG 342

Query: 188 LKTIVQRGAKLTGL-AVTDEAACEIAMRSRGTPRIAG----RLLRRVRD 231
            + I++  AK   +    D               +A       LR VRD
Sbjct: 343 REDILKVHAKKIKVGDNVDYNKVARMASGASGAELANIVNEAALRAVRD 391


>gi|164428754|ref|XP_957005.2| cell division cycle protein 48 [Neurospora crassa OR74A]
 gi|157072266|gb|EAA27769.2| cell division cycle protein 48 [Neurospora crassa OR74A]
          Length = 759

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 75/221 (33%), Gaps = 17/221 (7%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLED 105
           +    VL  GPPG GKT +A+ VA E G  F   +GP I          +L       E 
Sbjct: 191 KPPRGVLLYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEK 250

Query: 106 RD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
               ++FIDEI  ++   E+             +V +  +        S   ++AAT R 
Sbjct: 251 NSPAIIFIDEIDSIAPKREK-----TNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRP 305

Query: 164 GLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRI 221
             +   L+   RF   + +   +      I+Q   K   LA   +     A         
Sbjct: 306 NSIDPALRRFGRFDREVDIGIPDPTGRLEILQIHTKNMKLADDVDLEQIAAETHGYVGSD 365

Query: 222 AGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQ 262
              L        +    K    ++ +  +    +D +G  Q
Sbjct: 366 IAALCSEAAM--QQIREKMDLIDLDEDTIDAEVLDSLGVTQ 404



 Score = 50.1 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 53/236 (22%), Positives = 84/236 (35%), Gaps = 35/236 (14%)

Query: 2   MDREGLLSRNVSQED-------ADISLLR-------PR-TLEEFTGQVEACSNLKVFIEA 46
           +D E L S  V+QE+       ++ S LR       P    E+  G       L+  ++ 
Sbjct: 392 IDAEVLDSLGVTQENFRFALGVSNPSALREVAVVEVPNVRWEDIGGLETVKQELRESVQY 451

Query: 47  AKARAEAL--------DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AK 92
                E            VLF GPPG GKT LA+ VA E   NF S  GP +        
Sbjct: 452 PVDHPEKFLKFGLSPSRGVLFYGPPGTGKTMLAKAVANECAANFISVKGPELLSMWFGES 511

Query: 93  AGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN 150
             ++  +          V+F+DE+  ++      +  A      D +V +  +      +
Sbjct: 512 ESNIRDIFDKARAAAPCVVFLDELDSIAKARGGSVGDA--GGASDRVVNQLLTEMDGMTS 569

Query: 151 LSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVT 204
                +I AT R   L   L    R    I +   +      I++   + T +A  
Sbjct: 570 KKNVFVIGATNRPEQLDPALCRPGRLDSLIYVPLPDEAGRLGILKAQLRKTPVAAD 625


>gi|139439224|ref|ZP_01772666.1| Hypothetical protein COLAER_01680 [Collinsella aerofaciens ATCC
           25986]
 gi|133775248|gb|EBA39068.1| Hypothetical protein COLAER_01680 [Collinsella aerofaciens ATCC
           25986]
          Length = 712

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 62/254 (24%), Positives = 96/254 (37%), Gaps = 26/254 (10%)

Query: 20  SLLRPR-TLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLA 71
              RP+   E+  G  EA   L+             K  A+    VL VGPPG GKT LA
Sbjct: 183 EATRPKVKFEDVAGVDEAVEELEEIRDFLSDPDRYRKLGAKIPRGVLLVGPPGTGKTLLA 242

Query: 72  QVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEE 123
           + VA E GV F S SG       V   A  +  L    + +   ++FIDEI  +      
Sbjct: 243 KAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFKEAKSQAPSIIFIDEIDAVGRQRGA 302

Query: 124 ILYPAMEDFQLD---LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPI 178
            L    ++ +     L+V       S  + L     IAAT R  +L   L    RF   +
Sbjct: 303 GLGGGHDEREQTLNQLLVEMDGFEESESVIL-----IAATNRPDILDPALLRPGRFDRQV 357

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
            ++  +++  + I++  A+   +    +      M    T      LL      A   H 
Sbjct: 358 TVDRPDVKGREQILRVHAENKPMDEDVKFEKLAQMTVGFTGADLANLLNESALLAARRHR 417

Query: 239 KTITREIADAALLR 252
             I+ +  + ++ R
Sbjct: 418 SVISMDEVEESMER 431


>gi|293607024|ref|ZP_06689368.1| DNA polymerase III, gamma/tau subunit DnaX [Achromobacter
           piechaudii ATCC 43553]
 gi|292814621|gb|EFF73758.1| DNA polymerase III, gamma/tau subunit DnaX [Achromobacter
           piechaudii ATCC 43553]
          Length = 794

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 49/245 (20%), Positives = 87/245 (35%), Gaps = 31/245 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPR+ +   GQ      L   ++  +     L H  LF G  G+GKTTL++++A+ L   
Sbjct: 11  RPRSFDTLVGQDHVVRALTHALDTQR-----LHHAWLFTGTRGVGKTTLSRILAKSLNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAMEDFQL 134
              TS P     G   A       R V +++        +  ++ ++E+ +Y        
Sbjct: 66  TGITSKP----CGVCRACTEIDAGRFVDYLELDAASNRGVEEMTQLLEQAVYAPGAGRFK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             M+ E             ++++        I ATT    +   +  R  +   L     
Sbjct: 122 VYMIDEVHMLTGHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPA 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           + +   +Q       +A    A   I   ++G+ R A  L     D A    A  +T + 
Sbjct: 181 DSIVGHLQAVLGHEEVAFEVPALRLIGQAAQGSMRDALSL----TDQAIAYSAGNMTEDA 236

Query: 246 ADAAL 250
               L
Sbjct: 237 VRGML 241


>gi|255036262|ref|YP_003086883.1| ATPase associated with various cellular activities AAA_3
           [Dyadobacter fermentans DSM 18053]
 gi|254949018|gb|ACT93718.1| ATPase associated with various cellular activities AAA_3
           [Dyadobacter fermentans DSM 18053]
          Length = 308

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 45/179 (25%), Positives = 68/179 (37%), Gaps = 28/179 (15%)

Query: 30  FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPV 89
             GQ E     K  + A   +     H L VG PGL KT L Q +A  L +NF       
Sbjct: 16  IIGQDEVV---KRLLTAIFCQG----HCLLVGVPGLAKTLLIQTIASSLDLNFNRIQFTP 68

Query: 90  IAKAGDLAALLTNLEDRDVLFI-----------DEIHRLSIIVEEILYPAMEDFQLDLMV 138
                D+    T  ++R+  FI           DEI+R     +  L  AM+++ + +  
Sbjct: 69  DLMPSDILGSETLDQNRNFKFIKGPIFANIILADEINRTPPKTQSALLEAMQEYSVTIAG 128

Query: 139 GEGPSARSVKINLSRFTLIAATTRVGLLTNPL----QDRFGIPIRLNFYEIEDLKTIVQ 193
            + P      ++   F L          T PL     DRF   I+L++    +   IV+
Sbjct: 129 AKHP------LDRPFFVLATQNPIEQEGTYPLPEAQLDRFMFMIQLDYPSYAEEVNIVK 181


>gi|225464694|ref|XP_002277491.1| PREDICTED: hypothetical protein isoform 1 [Vitis vinifera]
          Length = 831

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 44/218 (20%), Positives = 78/218 (35%), Gaps = 43/218 (19%)

Query: 9   SRNVSQEDADISLLRPR---------TLEEFTGQVEACSNLKVFIEAAKARAEALDH--- 56
           +  V  ++     +RP          T ++     +   +L+  +     R +       
Sbjct: 490 AAEVPPDNEFEKRIRPEVIPANEIGVTFDDIGALSDIKESLQELVMLPLRRPDLFKGGLL 549

Query: 57  -----VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLED 105
                +L  GPPG GKT LA+ +A E G +F + S   I          ++ AL T    
Sbjct: 550 KPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAK 609

Query: 106 --RDVLFIDEIH-----RLSIIVEEILYPAMEDF---QLDLMVGEGPSARSVKINLSRFT 155
               ++F+DE+      R  +   E +     +F      L+   G           R  
Sbjct: 610 VSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTKAG----------ERIL 659

Query: 156 LIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           ++AAT R   L   +  RF   I +    +E  + I++
Sbjct: 660 VLAATNRPFDLDEAIIRRFERRIMVGLPSVESREMILK 697


>gi|163788771|ref|ZP_02183216.1| ATP-dependent protease La [Flavobacteriales bacterium ALC-1]
 gi|159876008|gb|EDP70067.1| ATP-dependent protease La [Flavobacteriales bacterium ALC-1]
          Length = 529

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 43/211 (20%), Positives = 80/211 (37%), Gaps = 36/211 (17%)

Query: 25  RTLE-EFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNF 82
           + L+ +  G  +    +  ++   K R +    +L   GPPG+GKT+L + +A  LG  +
Sbjct: 65  KILDRDHFGLDDVKKRIIEYLAVLKLRNDMKSPILCLYGPPGVGKTSLGKSIAEALGREY 124

Query: 83  RSTSGPVIAKAGDLA------------ALLTNLED----RDVLFIDEIHRLSIIVE---- 122
              S   +    ++              ++ +L+       V  +DEI +LS   +    
Sbjct: 125 VRISLGGLRDESEIRGHRKTYIGAMPGRIIQSLKKAQTSNPVFVLDEIDKLSTGNQGDPS 184

Query: 123 ----EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
               E+L P       D  +  G        +LS+   +A    +  +   L+DR  I I
Sbjct: 185 SAMLEVLDPEQNSEFYDNFLEMGY-------DLSKVMFVATANSLNTIQPALRDRMEI-I 236

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAAC 209
            +  Y IE+   I +R   L    + +    
Sbjct: 237 NVTGYTIEEKVEIAKR--HLLPKQLKEHGLD 265


>gi|94967095|ref|YP_589143.1| FtsH peptidase [Candidatus Koribacter versatilis Ellin345]
 gi|94549145|gb|ABF39069.1| membrane protease FtsH catalytic subunit [Candidatus Koribacter
           versatilis Ellin345]
          Length = 637

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 61/237 (25%), Positives = 98/237 (41%), Gaps = 27/237 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAA-------KARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  EA   LK  IE         K        VL VGPPG GKT LA+ VA E 
Sbjct: 153 TFKDVAGVDEAKEELKEIIEFLREAQKFQKLGGRIPKGVLLVGPPGTGKTLLARAVAGEA 212

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  L    +     ++FIDEI  +       L    +
Sbjct: 213 NVPFFSISGSDFVEMFVGVGASRVRDLFEQGKKNAPCIIFIDEIDAVGRHRGAGLGGGHD 272

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E     S +       L+AAT R  +L   L    RF   + ++  ++ 
Sbjct: 273 EREQTLNQLLVEMDGFESNEG----VILVAATNRPDVLDPALLRPGRFDRRVVVSRPDVR 328

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
             + I++  ++   LA       ++++ +RGTP  +G  L  + + A +  A+   +
Sbjct: 329 GREEILRVHSRKIPLADD----VDLSVLARGTPGFSGADLANMVNEAALNAARQNRK 381


>gi|47969542|emb|CAG25608.1| ftsH-like protease [Pisum sativum]
          Length = 706

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 60/245 (24%), Positives = 95/245 (38%), Gaps = 31/245 (12%)

Query: 27  LEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTS 86
           LEE         + K F        +    VL VGPPG GKT LA+ +A E GV F S S
Sbjct: 238 LEEIV---HYLRDPKRFTRLG---GKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCS 291

Query: 87  GPVIA------KAGDLAALLTNLEDRD--VLFIDEIHRL--SIIVEEILYPAMEDFQLDL 136
           G           A  +  L T  + R   ++FIDEI  +  S   ++ +Y  M    L+ 
Sbjct: 292 GSEFEEMFVGVGARRVRDLFTAAKKRSPCIIFIDEIDAIGGSRNPKDQMYMKM---TLNQ 348

Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQR 194
           M+ E    +  +       +I AT     L   L    RF   + +   ++E  + I++ 
Sbjct: 349 MLVELDGFKQNEG----IIVIGATNFPESLDKALVRPGRFDRHVVVPNPDVEGRRQIMES 404

Query: 195 G-AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
             +K+      D         +R TP  +G  L  + + A +  A   ++ ++   L   
Sbjct: 405 HMSKVLKADDVDPMII-----ARCTPGFSGADLANLVNVAALRAAMNGSKAVSMHDLEFA 459

Query: 254 AIDKM 258
               M
Sbjct: 460 RDKIM 464


>gi|224141399|ref|XP_002324060.1| predicted protein [Populus trichocarpa]
 gi|222867062|gb|EEF04193.1| predicted protein [Populus trichocarpa]
          Length = 677

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 62/274 (22%), Positives = 99/274 (36%), Gaps = 23/274 (8%)

Query: 26  TLEEFTG-----Q--VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G     Q   E    LK   + A   A     VL VGPPG GKT LA+ +A E 
Sbjct: 213 TFDDVAGVDEAKQDFQEIVEFLKTPEKFAAVGARIPKGVLLVGPPGTGKTLLAKAIAGEA 272

Query: 79  GVNFRSTSGPVIA------KAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG           A  +  L    +     ++FIDEI  +       +    +
Sbjct: 273 GVPFFSLSGSEFIEMFVGVGASRVRDLFNKAKANSPCIVFIDEIDAVGRQRGTGIGGGND 332

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E           S   +IAAT R  +L + L    RF   + +   ++ 
Sbjct: 333 EREQTLNQLLTEMDGFSGN----SGVIVIAATNRPEILDSALLRPGRFDRQVTVGLPDVR 388

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I+   +K   L      +         +      L+      A       IT +  
Sbjct: 389 GREEILNVHSKNKKLDKGVSLSVIAMRTPGFSGADLANLMNEAAILAGRRGKYKITLKEI 448

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV 280
           D ++ R+     G    D +  T++A +  G  V
Sbjct: 449 DDSIDRIVAGMEGTKMTDGKCKTLVAYHEVGHAV 482


>gi|222618018|gb|EEE54150.1| hypothetical protein OsJ_00955 [Oryza sativa Japonica Group]
          Length = 883

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 85/257 (33%), Gaps = 39/257 (15%)

Query: 9   SRNVSQEDADISLLRPR---------TLEEFTGQVEACSNLKVFIEAAKARAEALDH--- 56
           +  +  ++     +RP          T ++     +   +L+  +     R +       
Sbjct: 547 APEMPPDNEFEKRIRPEVIPANEIGVTFDDIGALSDIKESLQELVMLPLRRPDLFKGGLL 606

Query: 57  -----VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLED 105
                +L  GPPG GKT LA+ +A E   +F + S   I          ++ AL T    
Sbjct: 607 KPCRGILLFGPPGTGKTMLAKAIANEAQASFINVSMSTITSKWFGEDEKNVRALFTLAAK 666

Query: 106 --RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSR----FTLIAA 159
               ++F+DE+  +               ++     +          LSR      ++AA
Sbjct: 667 VSPTIIFVDEVDSML-GQRNRAGEHEAMRKI-----KNEFMTHWDGLLSRPDQKILVLAA 720

Query: 160 TTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTP 219
           T R   L   +  RF   I +    +E  + I++    L      D       + +  T 
Sbjct: 721 TNRPFDLDEAIIRRFERRIMVGLPSLESRELILR---SLLSKEKVDGGLDYKEL-ATMTE 776

Query: 220 RIAGRLLRRVRDFAEVA 236
             +G  L+ +   A   
Sbjct: 777 GYSGSDLKNLCTTAAYR 793


>gi|163785854|ref|ZP_02180324.1| DNA polymerase III gamma subunit [Hydrogenivirga sp. 128-5-R1-1]
 gi|159878878|gb|EDP72912.1| DNA polymerase III gamma subunit [Hydrogenivirga sp. 128-5-R1-1]
          Length = 89

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 4/73 (5%)

Query: 16 DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
          +      RP+      GQ    + L+  I+  +         +F GP G+GKTT+A+++ 
Sbjct: 4  EPFARKYRPKDFNSVVGQKHVVNTLRNAIKLNRVSHGY----IFAGPRGVGKTTIARIIT 59

Query: 76 RELGVNFRSTSGP 88
          + L      T  P
Sbjct: 60 KSLNCKQGITENP 72


>gi|116074799|ref|ZP_01472060.1| hypothetical protein RS9916_29734 [Synechococcus sp. RS9916]
 gi|116068021|gb|EAU73774.1| hypothetical protein RS9916_29734 [Synechococcus sp. RS9916]
          Length = 638

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 62/274 (22%), Positives = 101/274 (36%), Gaps = 23/274 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
             ++  G  EA  +L+  +   K         A+    VL VGPPG GKT LA+ +A E 
Sbjct: 179 KFDDVAGVSEAKQDLQEVVTFLKQPERFTSVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA 238

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG           A  +  L    ++    ++FIDEI  +       +    +
Sbjct: 239 GVPFFSLSGSEFVEMFVGVGASRVRDLFKRAKENSPCLIFIDEIDAVGRQRGAGIGGGND 298

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E           S   ++AAT R  +L + L    RF   + ++  +I+
Sbjct: 299 EREQTLNQLLTEMDGFEGN----SGIIILAATNRPDVLDSALMRPGRFDRQVTVDAPDIK 354

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
              +I++  A+   L                T      LL            +TI     
Sbjct: 355 GRLSILEVHARNKKLDQDLTLESIARRTPGFTGADLANLLNEAAILTARRRKETIGLSEI 414

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV 280
           D A+ R+     G    D R   +IA +  G  +
Sbjct: 415 DDAVDRIIAGMEGQPLTDGRSKRLIAYHEVGHAL 448


>gi|47209389|emb|CAF90692.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1085

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 74/192 (38%), Gaps = 33/192 (17%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI  ++ R      +L F GPPG+GKT++A+ +AR L   +   S
Sbjct: 540 EDHYGMEDVKKRILEFIAVSQLRGSTQGKILCFHGPPGVGKTSIARSIARALNREYFRFS 599

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ ++    +        
Sbjct: 600 VGGMTDVAEIKGHRRTYVGAMPGKMIQCLKKTRTENPLVLIDEVDKIGCGYQGDPSSALL 659

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD  +        V ++LS+   I        +  PL+DR  + I ++ 
Sbjct: 660 ELLDPEQNVNFLDHYL-------DVPVDLSKVLFICTANVTDTIPEPLRDRMEM-INVSG 711

Query: 183 YEIEDLKTIVQR 194
           Y  ++   I +R
Sbjct: 712 YVAQEKLAIAER 723


>gi|319956172|ref|YP_004167435.1| ATP-dependent proteinase [Nitratifractor salsuginis DSM 16511]
 gi|319418576|gb|ADV45686.1| ATP-dependent proteinase [Nitratifractor salsuginis DSM 16511]
          Length = 805

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 64/162 (39%), Gaps = 32/162 (19%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL------------- 103
           + F GPPG+GKT+LA  +A+ L       +   +    +L                    
Sbjct: 362 LCFAGPPGVGKTSLANSIAKALDRPLVRIALGGLEDVNELRGHRRTYVGAMPGRIVQGLI 421

Query: 104 EDRD---VLFIDEIHRLSI--------IVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152
           E +    V+ +DEI ++           + EIL P       D  +       +  I+LS
Sbjct: 422 EAKTMDPVMVLDEIDKVGRTHRGDPTSALLEILDPEQNTHYRDYYL-------NFSIDLS 474

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           +   IA    +G +  PL+DR  I I +N Y  E+   I +R
Sbjct: 475 KVVFIATANELGYIPAPLRDRMEIII-INSYTPEEKFEIARR 515


>gi|255280565|ref|ZP_05345120.1| cell division protein FtsH [Bryantella formatexigens DSM 14469]
 gi|255269030|gb|EET62235.1| cell division protein FtsH [Bryantella formatexigens DSM 14469]
          Length = 694

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 56/223 (25%), Positives = 89/223 (39%), Gaps = 23/223 (10%)

Query: 26  TLEEFTGQVEACSNLKV---FIEA----AKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ EA  +L+    F+E     +K  A+     L VGPPG GKT LA+ VA E 
Sbjct: 187 TFKDVAGQDEAKESLQEVVDFLENPGKYSKIGAKLPKGALLVGPPGTGKTLLAKAVAGEA 246

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
              F S SG           A  +  L    +     ++FIDEI  +    +       E
Sbjct: 247 HAPFFSLSGSEFVEMFVGVGASRVRELFEEAKKNAPCIIFIDEIDAIGKSRDSHFGGNDE 306

Query: 131 -DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            +  L+ ++ E     S    L    ++AAT R  +L   L    RF   I ++  +++ 
Sbjct: 307 REQTLNQLLAEMDGFDSASGLL----ILAATNRPEVLDQALLRPGRFDRRIVVDKPDLKG 362

Query: 188 LKTIVQRGAKLTGLAVT-DEAACEIAMRSRGTPRIAGRLLRRV 229
              +++  AK   +  T D  A  +A        +A  +    
Sbjct: 363 RVDVLKVHAKNVSMDDTVDLEAIALATSGAVGSDLANMINEAA 405


>gi|68076831|ref|XP_680335.1| 26S proteasome regulatory subunit 7 [Plasmodium berghei strain
           ANKA]
 gi|56501247|emb|CAH95167.1| 26S proteasome regulatory subunit 7, putative [Plasmodium berghei]
          Length = 420

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 82/248 (33%), Gaps = 20/248 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
           T  +  G  E    L+  +E    + E            VL  GPPG GKT  A+ +A  
Sbjct: 160 TYNDIGGCKEQLEKLREVVEMPLLQPERFVTLGIDPPKGVLLYGPPGTGKTLTARAIANR 219

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
               F    G  +        A  +  L    + +   +LFIDE+  +     +    A 
Sbjct: 220 TDACFICVIGSELVQKYVGEGARLVRELFQMAKSKKACILFIDEVDAIGGSRGDE--SAH 277

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            D ++   + E  +      N     +I AT R   L + L    R    I  +  ++E 
Sbjct: 278 GDHEVQRTMLEIVNQLDGFDNRGNIKVIMATNRPDTLDSALVRPGRIDRKIEFSLPDLEG 337

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
              I +  A    ++          +    T      +      FA  A  KTIT +   
Sbjct: 338 RTHIFKIHANTMNMSRDVRFELLARLCPNSTGSDIRSVCTEAGMFAIRARRKTITEKDLL 397

Query: 248 AALLRLAI 255
            A+ ++  
Sbjct: 398 LAINKVIH 405


>gi|15826905|ref|NP_301168.1| hypothetical protein ML0055 [Mycobacterium leprae TN]
 gi|221229383|ref|YP_002502799.1| hypothetical protein MLBr_00055 [Mycobacterium leprae Br4923]
 gi|7388384|sp|O33089|Y055_MYCLE RecName: Full=Uncharacterized protein ML0055
 gi|2370285|emb|CAA75205.1| hypothetical protein [Mycobacterium leprae]
 gi|13092452|emb|CAC29563.1| conserved hypothetical protein [Mycobacterium leprae]
 gi|219932490|emb|CAR70148.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
          Length = 573

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 64/267 (23%), Positives = 99/267 (37%), Gaps = 36/267 (13%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARA-------EALD 55
           DR+ LL++  ++ D  I L R +T      Q       +     AK RA       +   
Sbjct: 278 DRDRLLTQAQAELDRQIGLTRVKT------Q---IERYRAATMMAKVRAAKGMKVAQPSK 328

Query: 56  HVLFVGPPGLGKTTLAQVVARE-LGVNFRSTSGPVIAKAGDLAALLTNLE----DRDV-- 108
           H++F GPPG GKTT+A+VVA    G+   S    V     D  A           + +  
Sbjct: 329 HMIFTGPPGTGKTTIARVVANILAGLGVISEPKLVETSRKDFVAEYEGQSAVKAAKTIDL 388

Query: 109 -----LFIDEIHRLSIIVEEILYPAMEDFQLDLMV-GEGPSARSVKINLSRFTLIAATTR 162
                LFIDE + L    +    P  ++    L+   E    R V I     + I    R
Sbjct: 389 ALGGVLFIDEAYALVQERDGRTDPFGQEALDTLLARMENDRDRLVVIIAGYSSDID---R 445

Query: 163 VGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
           +      L+ RF   I  + Y  ++L  I    AK+         + E +       +  
Sbjct: 446 LLETNEGLRSRFATRIEFDTYSPDELLEI----AKVIATDADSSLSAEASKNLLEAAKQL 501

Query: 223 GRLLRRVRDFAEVAHAKTITREIADAA 249
            +   R R   +VA      R++ +AA
Sbjct: 502 AQRTLRGRPALDVAGNGRYARQLVEAA 528


>gi|325186172|emb|CCA20675.1| unnamed protein product putative [Albugo laibachii Nc14]
          Length = 941

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 87/257 (33%), Gaps = 37/257 (14%)

Query: 25  RTLE-EFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNF 82
           + L+ +  G  +    +  FI  +K +      ++ FVGPPG+GKT++ + +A  L   F
Sbjct: 461 KVLDNDHYGLSDIKERILEFIAVSKLKESVQGKIICFVGPPGVGKTSIGKSIAECLNREF 520

Query: 83  RSTSGPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE---- 122
              S   ++   ++                           ++ IDEI +L    +    
Sbjct: 521 YRFSVGGLSDVAEIKGHRRTYVGAMPGKVIQCLKTTQSSNPLILIDEIDKLGKGYQGDPA 580

Query: 123 ----EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
               E+L P+     +D           V ++LSR   I        +  PL DR  +  
Sbjct: 581 SALLELLDPSQNQHFVD-------HFMDVPVDLSRILFICTANVTDTIPGPLLDRMEVLR 633

Query: 179 RLNFYEIEDL----KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
              +   E L    + +V +  K TGL        E          I   + +  R+   
Sbjct: 634 LSGYDAPEKLSIAREYLVPKVMKRTGLDQYKLGCSEDITFCLTDDAILTLVKQYCRESGL 693

Query: 235 VAHAKTITREIADAALL 251
               + I R     AL 
Sbjct: 694 RNLEQHIERIFRKVALE 710


>gi|255523432|ref|ZP_05390401.1| ATP-dependent metalloprotease FtsH [Clostridium carboxidivorans P7]
 gi|296184714|ref|ZP_06853125.1| ATP-dependent metallopeptidase HflB [Clostridium carboxidivorans
           P7]
 gi|255512890|gb|EET89161.1| ATP-dependent metalloprotease FtsH [Clostridium carboxidivorans P7]
 gi|296050496|gb|EFG89919.1| ATP-dependent metallopeptidase HflB [Clostridium carboxidivorans
           P7]
          Length = 613

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 60/259 (23%), Positives = 104/259 (40%), Gaps = 27/259 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78
              +  GQ EA  +L   ++      +  D         L VGPPG GKT LA+ VA E 
Sbjct: 163 NFSDVAGQEEAKESLIEIVDFLHNPKKYTDIGAKLPKGALLVGPPGTGKTLLAKAVAGEA 222

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG           A  +  L    + +   ++FIDEI  +    +  +    E
Sbjct: 223 KVPFFSISGSAFVEMFVGMGASRVRDLFEQAQQKAPCIVFIDEIDAIGKSRDNNVSGNDE 282

Query: 131 -DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            +  L+ ++ E     S K       ++AAT R  +L   L    RF   + ++  +++ 
Sbjct: 283 REQTLNQLLAEMDGFDSSKG----VVILAATNRPEILDKALLRPGRFDRRVIVDRPDLKG 338

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            + I++  AK   +A   +    +   ++GTP   G  L  + + A +   K   +E+  
Sbjct: 339 REEILKVHAKGVKIANESD----LNSVAKGTPGAVGADLANIINEAALRAVKNNRKEVIQ 394

Query: 248 AALLR-LAIDKMGFDQLDL 265
             L   + +   G ++ D 
Sbjct: 395 EDLEEAIEVIIAGKEKKDR 413


>gi|325973267|ref|YP_004250331.1| ATP-dependent protease La [Mycoplasma suis str. Illinois]
 gi|323651869|gb|ADX97951.1| ATP-dependent protease La [Mycoplasma suis str. Illinois]
          Length = 814

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 50/250 (20%), Positives = 93/250 (37%), Gaps = 37/250 (14%)

Query: 32  GQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           G  +    +  F+   K        V+  VGPPG+GKT+LAQ +A+ L       S   +
Sbjct: 359 GLEKVKERIMEFVAVQKKTKNPQGTVICLVGPPGVGKTSLAQSIAKGLNKECVKISLGGM 418

Query: 91  AKAGDLA------------ALLTNLED----RDVLFIDEIHRL--------SIIVEEILY 126
               ++              ++  L+       +  +DEI ++           + E+L 
Sbjct: 419 NDEAEIRGHRKTYVGAMPGKIIRGLKQAKVSNPLFLLDEIDKMVESHHGDPISALLEVLD 478

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           P      +D  + E       +++LS+   IA       + +PL DR  I    ++ E E
Sbjct: 479 PKQNSEFMDNYIEE-------EVDLSKIMFIATANYEDNIPDPLLDRLEIIRLTSYTERE 531

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
            L+             V +E A + +  +     I   + +  R+ A V + K    +IA
Sbjct: 532 KLEI----TKNKLISEVLEEHALKPSELTFKDEAITYIIQKYTRE-AGVRNLKQCLAKIA 586

Query: 247 DAALLRLAID 256
              + R  ++
Sbjct: 587 RKFIQRQEME 596


>gi|297810407|ref|XP_002873087.1| hypothetical protein ARALYDRAFT_908201 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297318924|gb|EFH49346.1| hypothetical protein ARALYDRAFT_908201 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 810

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 51/270 (18%), Positives = 89/270 (32%), Gaps = 43/270 (15%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------------VLFVGPPGLGKTTLA 71
            L++  G  +     K   +  +     L H              +L  GPPG GKT +A
Sbjct: 200 RLDD-VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIA 258

Query: 72  QVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEE 123
           + VA E G  F   +GP I          +L       E     ++FIDEI  ++   E+
Sbjct: 259 RAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREK 318

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
                        +V +  +      + +   ++ AT R   +   L+ RFG        
Sbjct: 319 -----TNGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALR-RFG--RFDREI 370

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV-RDFAEVAHAKTIT 242
           +I     I +   ++  +   +    E         RI+      V  D A +      T
Sbjct: 371 DIGVPDEIGR--LEVLRIHTKNMKLAEDV----DLERISKDTHGYVGADLAAL-----CT 419

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIA 272
                    ++ +  +  D +D   L  +A
Sbjct: 420 EAALQCIREKMDVIDLEDDSIDAEILNSMA 449



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 56/294 (19%), Positives = 97/294 (32%), Gaps = 39/294 (13%)

Query: 2   MDREGLLSRNVSQE-------DADISLLR------PR-TLEEFTGQVEACSNLKVFIEAA 47
           +D E L S  VS E       +++ S LR      P  + E+  G       L+  ++  
Sbjct: 440 IDAEILNSMAVSNEHFHTALGNSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYP 499

Query: 48  KARAEAL--------DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKA 93
               E            VLF GPPG GKT LA+ +A E   NF S  GP +         
Sbjct: 500 VEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESE 559

Query: 94  GDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINL 151
            ++  +          VLF DE+  ++      +  A      D ++ +  +        
Sbjct: 560 ANVREIFDKARQSAPCVLFFDELDSIATQRGNSVGDA--GGAADRVLNQLLTEMDGMNAK 617

Query: 152 SRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAAC 209
               +I AT R  ++   L    R    I +   + +    I +   + + +A   +   
Sbjct: 618 KTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRLNIFKACLRKSPVAKDVDVTA 677

Query: 210 EIAMRSRGTPRIAGRLLRRVRDFAEVAH-----AKTITREIADAALLRLAIDKM 258
                   +      + +R   +A   +      K   R     A+    +D  
Sbjct: 678 LAKYTQGFSGADITEICQRACKYAIRENIEKDIEKERRRSENPEAMEEDMVDDE 731


>gi|254494914|ref|ZP_01052447.2| ATP-dependent protease La [Polaribacter sp. MED152]
 gi|213690496|gb|EAQ41875.2| ATP-dependent protease La [Polaribacter sp. MED152]
          Length = 823

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 46/211 (21%), Positives = 80/211 (37%), Gaps = 36/211 (17%)

Query: 25  RTLE-EFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNF 82
           + L+ +  G  +    +  ++   K R +    ++   GPPG+GKT+L + VA  LG  +
Sbjct: 359 KVLDRDHFGLEKVKERIIEYLAVLKLRNDMKSPIICLYGPPGVGKTSLGKSVAESLGRKY 418

Query: 83  RSTSGPVIAKAGDLA------------ALLTNLED----RDVLFIDEIHRLSIIVE---- 122
              S   +    ++              L+ NL+       V  +DEI +L    +    
Sbjct: 419 VRMSLGGLRDEAEIRGHRKTYIGAMPGRLIQNLKKAGTSNPVFVLDEIDKLGQSHQGDPS 478

Query: 123 ----EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
               E+L P       D  +  G        +LS+   IA    +G +   L+DR  I I
Sbjct: 479 SAMLEVLDPEQNTAFYDNYLEVGY-------DLSKVLFIATANNLGQIPWALRDRMEI-I 530

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAAC 209
            +  Y IE+   I +R   L    + +    
Sbjct: 531 NVTGYTIEEKVEIAKR--HLLPKQLKEHGLT 559


>gi|327353723|gb|EGE82580.1| ATP-dependent protease La [Ajellomyces dermatitidis ATCC 18188]
          Length = 1081

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 47/254 (18%), Positives = 90/254 (35%), Gaps = 37/254 (14%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI   K R      +L FVGPPG+GKT++ + +AR L   +   S
Sbjct: 540 EDHYGLKDVKDRILEFIAVGKLRGTVEGKILCFVGPPGVGKTSIGKSIARALNREYYRFS 599

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ ++    +        
Sbjct: 600 VGGLTDVAEIKGHRRTYVGALPGRVIQALKKCQTENPLILIDEVDKIGRGHQGDPASALL 659

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V ++LS+   +        +  PL DR  + I L+ 
Sbjct: 660 ELLDPEQNSSFLD-------HYMDVPVDLSKVLFVCTANMTDTIPRPLLDRMEM-IELSG 711

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  ++   I +R          + +  +    +     I   L++     + V + K   
Sbjct: 712 YVADEKMAIAER---YLAPTAKEMSGLKNVDVTLEKDAI-EELIKSYCRESGVRNLKKQI 767

Query: 243 REIADAALLRLAID 256
            ++   A L++  D
Sbjct: 768 EKVYRKAALKIIQD 781


>gi|158337706|ref|YP_001518882.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris
           marina MBIC11017]
 gi|158307947|gb|ABW29564.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris
           marina MBIC11017]
          Length = 631

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 53/263 (20%), Positives = 94/263 (35%), Gaps = 27/263 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  E+ + L+  +E  K+        A+    VL VGPPG GKT +A+ VA E 
Sbjct: 168 TFDDVAGVEESKTELEEIVEFLKSPQRFTEIGAKIPKGVLLVGPPGTGKTLMAKAVAGEA 227

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVE--EILYPA 128
           GV F S SG           A  +  L    + +   ++FIDE+  +             
Sbjct: 228 GVPFFSISGSEFVELFVGTGAARVRDLFEQAKKKAPCIIFIDELDAIGKSRAGGNGFVGG 287

Query: 129 MEDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
            ++ +  L  ++ E     +         ++AAT R   L   L    RF   + ++  +
Sbjct: 288 NDEREQTLNQLLTEMDGFGAGDAT---VIVLAATNRPETLDPALLRPGRFDRQVLVDRPD 344

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +     I++  AK   L    +                  L+      A    +K +  +
Sbjct: 345 LSGRLAILEIYAKKVKLGDNVDLKAMATRTPGFAGADLANLVNEAALLAARRDSKVVETQ 404

Query: 245 IADAALLRLAIDKMGFDQLDLRY 267
               A+ R+     G ++     
Sbjct: 405 DFAEAIERVVA---GLEKKSRVL 424


>gi|70607129|ref|YP_255999.1| AAA ATPase family protein [Sulfolobus acidocaldarius DSM 639]
 gi|29423772|gb|AAO73481.1| hypothetical p60 katanin [Sulfolobus acidocaldarius]
 gi|68567777|gb|AAY80706.1| AAA family ATPase [Sulfolobus acidocaldarius DSM 639]
          Length = 374

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 66/188 (35%), Gaps = 22/188 (11%)

Query: 24  PR-TLEEFTGQVEACSNLKVFIEAAKARAEALD-----HVLFVGPPGLGKTTLAQVVARE 77
           P+    +  G  +    LK  I     R +         +L  GPPG GKT +A  VA E
Sbjct: 101 PKVNFNDIVGLEDVKEALKEAIVYPTRRPDLFPLGWPRGILVYGPPGCGKTMIAAAVANE 160

Query: 78  LGVNFRSTSGPVIAKA------GDLAALLTNLEDRD-------VLFIDEIHRLSIIVEEI 124
           +   F       +          ++A +  +  +         ++FIDEI  L       
Sbjct: 161 IDSYFIQVDAASVMSKWLGEAEKNVAKIFNSARELSKKDGKPVIIFIDEIDALLGTYNSE 220

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
               +      L   +G   +S      +  +I AT +   L  P   RF   I +   +
Sbjct: 221 NGGEVRVRNQFLKEMDGLQDKSENF---KVYVIGATNKPWRLDEPFLRRFQKRIYIRLPD 277

Query: 185 IEDLKTIV 192
           IE  K+++
Sbjct: 278 IEQRKSLL 285


>gi|326433452|gb|EGD79022.1| cell division cycle protein 48 [Salpingoeca sp. ATCC 50818]
          Length = 805

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 81/226 (35%), Gaps = 20/226 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVARE 77
           + ++  G       L+  ++      E            VLF GPPG GKT LA+ +A E
Sbjct: 472 SWDDIGGLEAVKRELQELVQYPVEHPEKFLKFGMNPSKGVLFYGPPGCGKTLLAKAIANE 531

Query: 78  LGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAM 129
              NF S  GP +     G+  A + ++ D+       VLF DE+  ++      L  A 
Sbjct: 532 CQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCVLFFDELDSIAKARGGSLGDA- 590

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                D ++ +  +            +I AT R  ++   +    R    I +   +   
Sbjct: 591 -GGASDRVINQVLTEMDGMNQKKNVFIIGATNRPDVIDPAVLRPGRLDQLIYIPLPDEAS 649

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
              I++   + + +A   + +   +     +      + +R    A
Sbjct: 650 RLGILKANLRKSPIAPDVDLSFLASKTHGFSGADLTEICQRAAKLA 695



 Score = 53.5 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 56/274 (20%), Positives = 92/274 (33%), Gaps = 51/274 (18%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------------VLFVGPPGLGKTTLA 71
            L+E  G  +     K   +  +     L H              +L  GPPG GKT LA
Sbjct: 194 RLDE-IGYDDIGGCSKQLAQIKEMVELPLRHPQLFKSIGVKPPRGILLYGPPGTGKTLLA 252

Query: 72  QVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIV-- 121
           + VA E G  F   +GP I          +L       E     ++FIDEI  ++     
Sbjct: 253 RAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNAPAIIFIDEIDAIAPKREK 312

Query: 122 -EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPI 178
            +  +        L LM G    A  V        ++AAT R   +   L+   RF   +
Sbjct: 313 TQGEVERRTVSQLLTLMDGLKQRAHVV--------VMAATNRPNSIDPALRRFGRFDREV 364

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
            +   +      I++   K   L+       ++   ++ T    G  L  +   A +   
Sbjct: 365 DIGIPDATGRLEILRIHTKNMKLSDD----VDLEQVAKETHGYVGADLAALCSEAALQQI 420

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIA 272
           +            R+ +  +  D +D   L  +A
Sbjct: 421 R-----------ERIDVIDLEEDTIDAEILNSLA 443


>gi|325269121|ref|ZP_08135741.1| ATP-dependent protease LonB [Prevotella multiformis DSM 16608]
 gi|324988508|gb|EGC20471.1| ATP-dependent protease LonB [Prevotella multiformis DSM 16608]
          Length = 822

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 49/272 (18%), Positives = 96/272 (35%), Gaps = 42/272 (15%)

Query: 11  NVSQEDADISLLRPRTLE-EFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKT 68
             +++D D+   R R L+ +  G  +    +  +I   + R      +L   GPPG+GKT
Sbjct: 328 EYTKDDLDLKRAR-RILDKDHYGMEKVKERILEYIAVLQLRGSLKSPILCLYGPPGVGKT 386

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLA------------ALLTNLED----RDVLFID 112
           +L + +A  +   +   S   +    ++              ++ N++       V  +D
Sbjct: 387 SLGKSIAEAMKRRYVRVSLGGLHDESEIRGHRKTYIGAMPGRIIKNIQKAGSSNPVFILD 446

Query: 113 EIHRL---------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
           EI ++         S  + E+L P       D  +        +  +LS+   IA    +
Sbjct: 447 EIDKVTQNTINGDPSSALLEVLDPEQNSAFHDNYL-------DMDYDLSKVLFIATANDL 499

Query: 164 GLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAG 223
             +  PL DR  +     +   E +  I +R      L  T     E        P+ A 
Sbjct: 500 NTIPRPLLDRMELIEVSGYITEEKI-EIAKRHLIPKELENTGLDQLE------EKPKFAK 552

Query: 224 RLLRRVRDFAEVAHAKTITREIADAALLRLAI 255
             L ++ +            +  + A+ +LA 
Sbjct: 553 ATLEKIIESYTRESGVRQLEKQINKAMRKLAY 584


>gi|71895307|ref|NP_001026232.1| spastin [Gallus gallus]
 gi|82233831|sp|Q5ZK92|SPAST_CHICK RecName: Full=Spastin
 gi|53131842|emb|CAG31851.1| hypothetical protein RCJMB04_12e12 [Gallus gallus]
          Length = 613

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 48/237 (20%), Positives = 85/237 (35%), Gaps = 21/237 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDHV-------LFVGPPGLGKTTLAQVVAREL 78
             ++  GQ  A   L+  +     R E    +       L  GPPG GKT LA+ VA E 
Sbjct: 337 KFDDIAGQELAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES 396

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAME 130
              F + S   +           + AL     +    ++FIDE+  L     E  + A  
Sbjct: 397 NATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLCERREGEHDASR 456

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
             + + ++       S +    R  ++ AT R   L + +  RF   + ++    E    
Sbjct: 457 RLKTEFLIEFDGVQSSGE---DRILVMGATNRPQELDDAVLRRFTKRVYVSLPNEETRLI 513

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           +++    L     +     E+A  +R T   +G  L  +   A +   + +  E   
Sbjct: 514 LLK---NLLSKQGSPLTQKELAQLARMTDGYSGSDLTALVKDAALGPIRELKPEQVK 567


>gi|253743133|gb|EES99642.1| Topoisomerase II [Giardia intestinalis ATCC 50581]
          Length = 423

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 51/226 (22%), Positives = 86/226 (38%), Gaps = 23/226 (10%)

Query: 19  ISLLRPR-TLEEFTGQVEACSNLK-------VFIEAAKARAEALDHVLFVGPPGLGKTTL 70
           I  ++P    ++  G  +A   LK       +F +  + + E    +L  G PG GK+ L
Sbjct: 114 IVRMKPDVKWDDVVGLEKAKEALKEAVILPLMFPQLFQGKREPWRGILLYGCPGTGKSFL 173

Query: 71  AQVVARELGVNFRSTSGP--VIAKAGDLAALLT------NLEDRDVLFIDEIHRL--SII 120
           A+ VA E    F S S    V    G+ A L+         E + V+FIDEI  L  S  
Sbjct: 174 AKAVAAECDATFFSISSSDLVSKYVGESARLIKALFEMARAEKQAVIFIDEIDALASSRG 233

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
             E    + +     L+  +G     V        ++ AT     L + ++ RF   I +
Sbjct: 234 GGEESDASRQIKTEFLVQMQG-----VGKTGGNVLVLGATNYPESLDSAIRRRFEKRIEV 288

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
           +  +      I++     T   + DE   E+  ++         +L
Sbjct: 289 SLPDAAARANIIKNCIGSTPNVLMDEDITELGQQTENYSGSDLSIL 334


>gi|255722928|ref|XP_002546398.1| hypothetical protein CTRG_05876 [Candida tropicalis MYA-3404]
 gi|240130915|gb|EER30477.1| hypothetical protein CTRG_05876 [Candida tropicalis MYA-3404]
          Length = 754

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 46/208 (22%), Positives = 77/208 (37%), Gaps = 19/208 (9%)

Query: 28  EEFTGQVEACSNLK-----VFIEAA--KARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           ++  G   A + LK      F+     K   E    +L  GPPG GKT LA+ VA E   
Sbjct: 476 DDIVGLETAKNALKEAVVYPFLRPDLFKGLREPTRGMLLFGPPGTGKTMLARAVATESKS 535

Query: 81  NFRSTSGPV-----IAKAGDLAALLTNLEDR---DVLFIDEIHRLSIIVE----EILYPA 128
            F S S        + ++  L   L  L  +    ++F+DEI  L         E     
Sbjct: 536 TFFSVSAASLVSKYLGESEKLVKALFLLAKKLAPSIIFMDEIDSLLTARSEGEIESSRRI 595

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
             +F +        +A     + SR  ++ AT     +    + RF   + +   E E  
Sbjct: 596 KNEFLVQWSDLSSAAAAREGEDNSRVLVLGATNMPWSIDEAARRRFSKKLYIPLPEDETR 655

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSR 216
              +++  K     ++DE   E+  ++ 
Sbjct: 656 SNQIKKLLKFQNSNLSDEEINELTKQTD 683


>gi|239614247|gb|EEQ91234.1| ATP-dependent protease La [Ajellomyces dermatitidis ER-3]
          Length = 1081

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 47/254 (18%), Positives = 90/254 (35%), Gaps = 37/254 (14%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI   K R      +L FVGPPG+GKT++ + +AR L   +   S
Sbjct: 540 EDHYGLKDVKDRILEFIAVGKLRGTVEGKILCFVGPPGVGKTSIGKSIARALNREYYRFS 599

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ ++    +        
Sbjct: 600 VGGLTDVAEIKGHRRTYVGALPGRVIQALKKCQTENPLILIDEVDKIGRGHQGDPASALL 659

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V ++LS+   +        +  PL DR  + I L+ 
Sbjct: 660 ELLDPEQNSSFLD-------HYMDVPVDLSKVLFVCTANMTDTIPRPLLDRMEM-IELSG 711

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  ++   I +R          + +  +    +     I   L++     + V + K   
Sbjct: 712 YVADEKMAIAER---YLAPTAKEMSGLKNVDVTLEKDAI-EELIKSYCRESGVRNLKKQI 767

Query: 243 REIADAALLRLAID 256
            ++   A L++  D
Sbjct: 768 EKVYRKAALKIIQD 781


>gi|71027749|ref|XP_763518.1| cell division cycle protein 48 [Theileria parva strain Muguga]
 gi|68350471|gb|EAN31235.1| cell division cycle protein 48, putative [Theileria parva]
          Length = 954

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 43/187 (22%), Positives = 71/187 (37%), Gaps = 12/187 (6%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A +  L D+       +
Sbjct: 711 VLFYGPPGCGKTLLAKAIAHECNANFISIKGPELLTMWFGESEANVRELFDKARASAPCI 770

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           LF DEI  ++         +      D ++ +  +            +IAAT R  ++  
Sbjct: 771 LFFDEIDSIAKTRSSN--TSTGSEAADRVINQILTEIDGINVKKPIFIIAATNRPDIIDP 828

Query: 169 PLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
            +    R G  I +   +++  + I +   K + LA     +         +      + 
Sbjct: 829 AILRPGRLGKLIYIPLPDLKSRENIFKASLKNSPLAPDVNISKMAQQLDGYSGADIAEIC 888

Query: 227 RRVRDFA 233
            R    A
Sbjct: 889 HRAAREA 895



 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 40/106 (37%), Gaps = 16/106 (15%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARELG 79
           ++  G  +  S ++  IE      E            V+  GPPG GKT +A+ +A E G
Sbjct: 365 DDIGGMNKQLSKIRELIELPLLHPELFKTVGINPPKGVILHGPPGSGKTLVARAIANETG 424

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRL 117
                 +GP I           L     N       ++FIDEI  +
Sbjct: 425 AKCYVINGPEIMSKMVGESEEKLRKTFENARKNAPSIIFIDEIDSI 470


>gi|326475725|gb|EGD99734.1| intermembrane space AAA protease [Trichophyton tonsurans CBS
           112818]
          Length = 802

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 55/243 (22%), Positives = 90/243 (37%), Gaps = 26/243 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G  EA   L+  +E        +    +    +L VGPPG GKT LA+ VA E 
Sbjct: 336 RFSDVHGCDEAKDELQELVEFLSNPERFSSLGGKLPKGILLVGPPGTGKTLLARAVAGEA 395

Query: 79  GVNFRSTSGPVIA------KAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAME 130
           GV F   SG           A  +  L      +   ++FIDE+  +     E    A  
Sbjct: 396 GVPFFYMSGSEFDEIYVGVGAKRVRELFAQARAKAPAIIFIDELDAIGAKRNER-DAAYV 454

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
              L+ ++ E           S   +IAAT    LL   L    RF   + +N  ++   
Sbjct: 455 KQTLNQLLTELDGFSQT----SGVIIIAATNFPELLDKALTRPGRFDRKVDVNLPDVRGR 510

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             I+    K   ++   +A     + +RGTP  +G  L  + + A +  ++    ++   
Sbjct: 511 VDILNHHMKNIQVSTEVDA----TVIARGTPGFSGADLENLINQAAIRASRDKKAKVGPE 566

Query: 249 ALL 251
              
Sbjct: 567 DFD 569


>gi|312211421|emb|CBX91506.1| similar to AAA family ATPase/60S ribosome export protein Rix7
           [Leptosphaeria maculans]
          Length = 729

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 59/246 (23%), Positives = 80/246 (32%), Gaps = 28/246 (11%)

Query: 25  RTLEEFTGQVEACSNLKVFI--------EAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
            T     G       LK+ I          AK    A   VL  GPPG GKT LA+ VA 
Sbjct: 465 TTWSNVGGLEGVREELKMAIVEPLMNPERYAKVGISAPTGVLLWGPPGCGKTLLAKAVAA 524

Query: 77  ELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPA 128
           E   NF S  GP +     G+    L  L  R       V+F DEI  L       L+ A
Sbjct: 525 ESKANFISVKGPELLNKYVGESERALRQLFMRARSSVPCVIFFDEIDALVPRRSTELHEA 584

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
                  L+           I L     IAAT R  ++   +    R    + +   + E
Sbjct: 585 SARVVNTLLTELDGLNPRQGIYL-----IAATNRPEMIDEAMLRPGRLETLLYVELPKPE 639

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTP---RIAGRLLRRVRDFAEVAHAKTITR 243
           +   I++  A +      D A  E+                LLR+    A    +  +  
Sbjct: 640 ERVGILK--ALIQQGGAMDIALAELGRSDECNNFSGADLQSLLRKAGQNALRRGSDIVQE 697

Query: 244 EIADAA 249
                A
Sbjct: 698 MDFTEA 703



 Score = 53.9 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 60/308 (19%), Positives = 103/308 (33%), Gaps = 48/308 (15%)

Query: 26  TLEEFTGQVEACSNLK-----VFI---EAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +L++  G       LK       +   E           VL  GPPG GKT + +  A E
Sbjct: 153 SLDDIGGVDNVVDELKDHLVLPLLNPEEYIDCGISIPRGVLLHGPPGCGKTMICRAFAAE 212

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
           LGV F    GP I           +       ++    ++FIDEI  +++   +     M
Sbjct: 213 LGVPFIEILGPSIVSSMSGESEKQIREHFERAKEVAPCIIFIDEIDVIALKR-DSAQSQM 271

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
           E   +  ++    S      +     ++AAT R   L   L+   RFG  I +     E 
Sbjct: 272 EKRIVAQLLISMDSLAMESNDGKPVIVLAATNRPDSLDPALRRGGRFGTEINMGV-PNEP 330

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           ++ ++ R          D     +A R+ G      + L        V+ A T + +   
Sbjct: 331 MREMILRALTRKTKVNADIDYPALAKRTAGFVGADLKDL--------VSKAATWSLDQYR 382

Query: 248 AALLRLAIDKMGFDQLD----------------LRYLTMIARNFGGGPVGIETISAGLSE 291
            AL   A +      +D                 R +  +       P G +  +  +  
Sbjct: 383 LALEEQAAEYETAMDIDEAQPASKKPSASVLSVRRLVKRLRDPKAERPAGHDNTAISM-- 440

Query: 292 PRDAIEDL 299
              A+E++
Sbjct: 441 --QALENV 446


>gi|309791814|ref|ZP_07686301.1| AAA family ATPase, CDC48 subfamily protein [Oscillochloris
           trichoides DG6]
 gi|308226136|gb|EFO79877.1| AAA family ATPase, CDC48 subfamily protein [Oscillochloris
           trichoides DG6]
          Length = 710

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 39/152 (25%), Positives = 66/152 (43%), Gaps = 13/152 (8%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLED 105
           +A   VL  GPPG GKT +A+ VA E   +F + +GP I      A   +L  +      
Sbjct: 215 DAPKGVLLYGPPGSGKTLIARAVANETSAHFVTINGPEIIDKLYGASEANLRGIFDEARK 274

Query: 106 R--DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
           R   ++FIDEI  ++   E++      + ++   V +  +      +     +IAAT   
Sbjct: 275 RAPAIIFIDEIDAIAPKREDLSGDRQVERRV---VAQLLALMDGLESRGNVIVIAATNLP 331

Query: 164 GLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQ 193
             L   L+   RF   I +N  + +    I++
Sbjct: 332 NSLDPALRRPGRFDREISINVPDKDGRAEILE 363



 Score = 47.8 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 42/188 (22%), Positives = 74/188 (39%), Gaps = 29/188 (15%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAK---ARAEALDH--------VLFVGPPGLGKTTLAQVV 74
           T ++  G  +     ++ IEA +     A A +H        VL  GPPG GKT LA+ +
Sbjct: 456 TWDDVGGLEDVR---RLLIEAVEWPLRHARAFEHLGVRTPKGVLLYGPPGTGKTLLAKAL 512

Query: 75  ARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILY 126
           ARE   NF S  GP +           +  +          ++F DEI  ++        
Sbjct: 513 ARESEANFISVKGPELLNRWVGESERGVREIFRKARQAAPCIIFFDEIDAIAPPRGGG-- 570

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
              +    + +V +  +       L    ++AAT R+ ++   LQ   RF   + +   +
Sbjct: 571 ---DSGVTERVVSQLLTELDGIEALKGVVVLAATNRIDMVDPALQRPGRFDFLVEMPRPD 627

Query: 185 IEDLKTIV 192
            +  + I+
Sbjct: 628 TQVRRAIL 635


>gi|304384430|ref|ZP_07366835.1| ATP-dependent metalloprotease FtsH [Prevotella marshii DSM 16973]
 gi|304334482|gb|EFM00770.1| ATP-dependent metalloprotease FtsH [Prevotella marshii DSM 16973]
          Length = 671

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 56/249 (22%), Positives = 94/249 (37%), Gaps = 28/249 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ  A   ++  +E  K          +     L VGPPG GKT LA+ VA E 
Sbjct: 191 TFKDVAGQAGAKQEVEEIVEFLKNPKKYTDLGGKIPKGALLVGPPGTGKTLLAKAVAGEA 250

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM- 129
            V F S SG       V   A  +       +++   ++FIDEI  +     +   PAM 
Sbjct: 251 NVPFFSMSGSDFVEMFVGVGASRVRDTFQKAKEKAPSIIFIDEIDAVGRARSKN--PAMG 308

Query: 130 ----EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183
                +  L+ ++ E     +     S   ++AAT RV +L   L    RF   I ++  
Sbjct: 309 TNDERENTLNALLTEMDGFGTN----SGVIILAATNRVDMLDQALLRAGRFDRQIHVDLP 364

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           ++ + K I     K   +  + +           +      +       A   + KT+ +
Sbjct: 365 DLTERKEIFMVHLKPVKVDKSLDIDLLARQTPGFSGADIANVCNEAALIAARHNKKTVNK 424

Query: 244 EIADAALLR 252
           +    A+ R
Sbjct: 425 QDFLDAVDR 433


>gi|302659076|ref|XP_003021233.1| hypothetical protein TRV_04665 [Trichophyton verrucosum HKI 0517]
 gi|291185121|gb|EFE40615.1| hypothetical protein TRV_04665 [Trichophyton verrucosum HKI 0517]
          Length = 717

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 55/243 (22%), Positives = 90/243 (37%), Gaps = 26/243 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G  EA   L+  +E        +    +    +L VGPPG GKT LA+ VA E 
Sbjct: 251 RFSDVHGCDEAKDELQELVEFLSNPERFSSLGGKLPKGILLVGPPGTGKTLLARAVAGEA 310

Query: 79  GVNFRSTSGPVIA------KAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAME 130
           GV F   SG           A  +  L      +   ++FIDE+  +     E    A  
Sbjct: 311 GVPFFYMSGSEFDEIYVGVGAKRVRELFAQARAKAPAIIFIDELDAIGAKRNER-DAAYV 369

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
              L+ ++ E           S   +IAAT    LL   L    RF   + +N  ++   
Sbjct: 370 KQTLNQLLTELDGFSQT----SGVIIIAATNFPELLDKALTRPGRFDRKVDVNLPDVRGR 425

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             I+    K   ++   +A     + +RGTP  +G  L  + + A +  ++    ++   
Sbjct: 426 VDILNHHMKNIQVSTEVDA----TVIARGTPGFSGADLENLINQAAIRASRDKKAKVGPE 481

Query: 249 ALL 251
              
Sbjct: 482 DFD 484


>gi|189463184|ref|ZP_03011969.1| hypothetical protein BACCOP_03897 [Bacteroides coprocola DSM 17136]
 gi|189430163|gb|EDU99147.1| hypothetical protein BACCOP_03897 [Bacteroides coprocola DSM 17136]
          Length = 678

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 74/324 (22%), Positives = 116/324 (35%), Gaps = 50/324 (15%)

Query: 26  TLEEFTGQ-------VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ        E    LK   +  +   +     L VGPPG GKT LA+ VA E 
Sbjct: 188 TFKDVAGQAAAKQEVEEIVEFLKQPQKYTELGGKIPKGALLVGPPGTGKTLLAKAVAGEA 247

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM- 129
            V F S SG       V   A  +  L    +++   ++FIDEI  +     +   P+M 
Sbjct: 248 DVPFFSISGSDFVEMFVGVGASRVRDLFRQAKEKSPCIIFIDEIDAVGRARGKN--PSMG 305

Query: 130 ----EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ-----DRFGIPIRL 180
                +  L+ ++ E     S     S   ++AAT RV +L   L      DR       
Sbjct: 306 GNDERENTLNQLLTEMDGFGSN----SGVIILAATNRVDILDKALLRAGRFDRQIYVDLP 361

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           +  E +++  +  R  KL      D  A +    S         +       A      +
Sbjct: 362 DLNERKEVFGVHLRPLKLDNTVDVDLLARQTPGFSGADI---ANVCNEAALIAARHSKPS 418

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLI 300
           + ++   AA+ R+     G ++          R       G  TIS  L        +  
Sbjct: 419 VGKDDFLAAIDRIVG---GLEKKTKVMTAAEKRAIALHEAGHATISWFL--------EHA 467

Query: 301 EPYMIQQGFIQRTPRGRLLMPIAW 324
            P +I+   +   PRGR  +  AW
Sbjct: 468 NP-LIKVTIV---PRGR-ALGAAW 486


>gi|154339736|ref|XP_001565825.1| replication factor C, subunit 4 [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134063143|emb|CAM45343.1| putative replication factor C, subunit 4 [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 360

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 46/259 (17%), Positives = 82/259 (31%), Gaps = 71/259 (27%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+T+ +  G  EA S L+V      A+   L ++L  GPPG GKTT    +AR
Sbjct: 7   PWVEKYRPQTVTDIVGNTEAISRLQVI-----AKEGNLPNLLLCGPPGTGKTTSMLCLAR 61

Query: 77  -----------------------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDR- 106
                                        EL  +       V  K    A     L  + 
Sbjct: 62  DLLLQSTDASSAGTSLGGSTKDILKDAVLELNASDDRGLDVVREKIKLFAQTKKTLPKKF 121

Query: 107 -----------------DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKI 149
                             ++ +DE   ++   ++ L                   R++++
Sbjct: 122 FSTGEGPTRDEHVVHLHKIVLLDEADSMTPAAQQALR------------------RTMEL 163

Query: 150 NLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAAC 209
           + S      A      +  P+Q R  +       + + LK +V    +   ++ TD+   
Sbjct: 164 HSSTTRFAFACNNSSKIIEPIQSRCAVVRFKKLSDADILKRLV-YVIQQESVSYTDDGLE 222

Query: 210 EIAMRSRGTPRIAGRLLRR 228
            +   + G  R A   L+ 
Sbjct: 223 ALLYLAEGDLRQALNSLQA 241


>gi|56750609|ref|YP_171310.1| ATP-dependent Zn protease [Synechococcus elongatus PCC 6301]
 gi|81299751|ref|YP_399959.1| FtsH peptidase [Synechococcus elongatus PCC 7942]
 gi|56685568|dbj|BAD78790.1| ATP-dependent Zn protease [Synechococcus elongatus PCC 6301]
 gi|81168632|gb|ABB56972.1| FtsH peptidase homologue, chloroplast. Metallo peptidase. MEROPS
           family M41 [Synechococcus elongatus PCC 7942]
          Length = 630

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 62/273 (22%), Positives = 99/273 (36%), Gaps = 23/273 (8%)

Query: 27  LEEFTGQVEACSNLK---VFIEAAKA----RAEALDHVLFVGPPGLGKTTLAQVVARELG 79
            ++  G  EA   L+    F++ ++      A     VL VGPPG GKT LA+ +A E G
Sbjct: 173 FDDVAGIEEAKEELQEVVTFLKNSERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAG 232

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMED 131
           V F S SG           A  +  L    ++    ++FIDEI  +       +    ++
Sbjct: 233 VPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFIDEIDAVGRQRGAGIGGGNDE 292

Query: 132 FQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            +  L  ++ E               +IAAT R  +L   L    RF   I ++  +I+ 
Sbjct: 293 REQTLNQLLTEMDGFEGNTG----IIIIAATNRPDVLDAALTRPGRFDRQIIVDAPDIKG 348

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
              I++  A+   LA                      LL              IT    D
Sbjct: 349 RLEILKVHARNKKLAEDVSLDVIARRTPGFAGADLANLLNEAAILTARRRKDAITLTEID 408

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV 280
            A+ R+     G   +D +   +IA +  G  +
Sbjct: 409 DAVDRVVAGMEGTPLVDGKSKRLIAYHEVGHAI 441


>gi|300691219|ref|YP_003752214.1| cell division protein, ATP-dependent zinc-metallo protease; AAA
           ATPase and peptidase M41 families [Ralstonia
           solanacearum PSI07]
 gi|299078279|emb|CBJ50927.1| Cell division protein, ATP-dependent zinc-metallo protease; AAA
           ATPase and peptidase M41 families [Ralstonia
           solanacearum PSI07]
          Length = 628

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 85/220 (38%), Gaps = 16/220 (7%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLT 101
           K        VL VGPPG GKT LA+ +A E  V F S SG       V   A  +  +  
Sbjct: 181 KLGGRIPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEMFVGVGAARVRDMFE 240

Query: 102 NLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDL--MVGEGPSARSVKINLSRFTLI 157
           N + +   ++FIDEI  +       +    ++ +  L  M+ E     +     S   +I
Sbjct: 241 NAKKQAPCIVFIDEIDAVGRHRGAGMGGGNDEREQTLNQMLVEMDGFEAN----SGVIVI 296

Query: 158 AATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRS 215
           AAT R  +L   L    RF   + +   +I   + I++   +   +    +A+       
Sbjct: 297 AATNRADVLDKALLRPGRFDRQVYVGLPDIRGREQILKVHMRKVPIGNDVDASVLARGTP 356

Query: 216 RGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255
             +      L+     FA   + + +  +  + A  ++ +
Sbjct: 357 GFSGADLANLVNEAALFAARRNKRVVDMQDFEDAKDKIYM 396


>gi|299067243|emb|CBJ38440.1| DNA polymerase III subunits gamma and tau [Ralstonia solanacearum
           CMR15]
          Length = 763

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 83/230 (36%), Gaps = 24/230 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPR      GQ      L   +E      + L H  LF G  G+GKTTL++++A+ L   
Sbjct: 42  RPRDFTTLVGQEHVVKALTHALE-----QQRLHHAYLFTGTRGVGKTTLSRILAKSLNCI 96

Query: 82  FRSTSGPVIAKA-GDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAMEDFQ 133
                G + A+  G   A       R V +I+        +  ++ +++  +Y       
Sbjct: 97  GTDGQGGITAQPCGVCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDRAVYAPTAGRF 156

Query: 134 LDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
              M+ E             ++++        I ATT    +   +  R  +   L    
Sbjct: 157 KVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRC-LQFNLKQMP 215

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
              + + + R     G+A    A   +A  ++G+ R A  L  +   ++ 
Sbjct: 216 PGHIVSHLDRILGEEGIAHEPNALRLLASAAQGSMRDALSLTDQAIAYSA 265


>gi|159149474|gb|ABW91184.1| CDC48/PAS1/SEC28 family ATPase [Nosema bombycis]
          Length = 640

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 81/220 (36%), Gaps = 30/220 (13%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEA--------AKARAEALD 55
            +  +SR  ++E+ ++        ++  G  +  + +K  IE          K   +   
Sbjct: 46  SDETISREAAEEEFNMVGY-----DDIGGCRKQLAQIKELIELPLRHPALYNKLGVKPPK 100

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD-- 107
            +L  GPPG GKT +A+ VA E G      +GP I          +L       E     
Sbjct: 101 GILLYGPPGTGKTLIAKAVANETGAFIYLINGPEIMSKMAGESENNLRKAFEEAERNKPA 160

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMV-GEGPSARSVKINLSRFTLIAATTRVGLL 166
           ++F+DEI  L+   E+            L+   +G  +R   I L      AAT R   +
Sbjct: 161 IIFMDEIDALAPKREKTQGEVERRIVSQLLTLMDGSKSRDGVIVL------AATNRPNSI 214

Query: 167 TNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVT 204
              L+   RF   I +   +      I++   K   +A  
Sbjct: 215 DPALRRYGRFDREIEIGVPDDTGRLEILRIHTKNMRMAED 254



 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 51/247 (20%), Positives = 86/247 (34%), Gaps = 21/247 (8%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVARELG 79
            +  G  +  + L+  I+      E            VLF GPPG GKT LA+ VA E  
Sbjct: 338 SDIGGLEDVKTELRETIQYPITYPEKFLKFGMTPSKGVLFYGPPGCGKTLLAKAVATECQ 397

Query: 80  VNFRSTSGPVI--AKAGDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAMED 131
            NF S  GP +     G+  + +  L DR       VLF DEI  ++         A + 
Sbjct: 398 ANFISIKGPELLTMWVGESESNVRELFDRARSAAPCVLFFDEIDSVAKSRGA---SAGDS 454

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
              D ++ +  +            +I AT R   L   +    R    + +   +++   
Sbjct: 455 GSGDRVLNQLLTEMDGMNQKKNVFVIGATNRPDQLDTAIMRPGRLDQLVYIPLPDLDSRL 514

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
           +I++   + T L+             R +      + +R    A     +   +   D +
Sbjct: 515 SILKAALRKTPLSPDVNLVQLAEATDRFSGADLTEICQRACKLAVKESIEYEMKAKKDDS 574

Query: 250 LLRLAID 256
            L    D
Sbjct: 575 NLMDIED 581


>gi|302499021|ref|XP_003011507.1| hypothetical protein ARB_02357 [Arthroderma benhamiae CBS 112371]
 gi|291175058|gb|EFE30867.1| hypothetical protein ARB_02357 [Arthroderma benhamiae CBS 112371]
          Length = 718

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 55/243 (22%), Positives = 90/243 (37%), Gaps = 26/243 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G  EA   L+  +E        +    +    +L VGPPG GKT LA+ VA E 
Sbjct: 252 RFSDVHGCDEAKDELQELVEFLSNPERFSSLGGKLPKGILLVGPPGTGKTLLARAVAGEA 311

Query: 79  GVNFRSTSGPVIA------KAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAME 130
           GV F   SG           A  +  L      +   ++FIDE+  +     E    A  
Sbjct: 312 GVPFFYMSGSEFDEIYVGVGAKRVRELFAQARAKAPAIIFIDELDAIGAKRNER-DAAYV 370

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
              L+ ++ E           S   +IAAT    LL   L    RF   + +N  ++   
Sbjct: 371 KQTLNQLLTELDGFSQT----SGVIIIAATNFPELLDKALTRPGRFDRKVDVNLPDVRGR 426

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             I+    K   ++   +A     + +RGTP  +G  L  + + A +  ++    ++   
Sbjct: 427 VDILNHHMKNIQVSTEVDA----TVIARGTPGFSGADLENLINQAAIRASRDKKAKVGPE 482

Query: 249 ALL 251
              
Sbjct: 483 DFD 485


>gi|209521468|ref|ZP_03270175.1| AAA ATPase central domain protein [Burkholderia sp. H160]
 gi|209498098|gb|EDZ98246.1| AAA ATPase central domain protein [Burkholderia sp. H160]
          Length = 633

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 55/250 (22%), Positives = 95/250 (38%), Gaps = 24/250 (9%)

Query: 26  TLEEFTGQVEACSNL---KVFIEAAKARAE----ALDHVLFVGPPGLGKTTLAQVVAREL 78
             ++  G  EA + L   + ++   K  +     A   +L VG PG+GKT LAQ +A E 
Sbjct: 187 RFDDVIGANEAKAALADIRGYLSDPKQFSSMGVRAPCGILMVGAPGVGKTRLAQALAGEC 246

Query: 79  GVNFRSTSGPVIA------KAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYP--A 128
           G NF S +G   +          +  L          V+FIDE   L+   +    P  A
Sbjct: 247 GANFVSITGSYFSAKYYGVGIQKVRHLFELARQNAPTVIFIDEADGLAKRTDTGGGPVEA 306

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
             +  ++ ++ E     S +       ++AAT     L   L+   RF   +++   + E
Sbjct: 307 ESNRIINQLLAEMDGFESNEG----VIVVAATNHPDNLDEALRRPGRFDRTVQVRLPDRE 362

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRG-TPRIAGRLLRRVRDFAEVAHAKTITREI 245
           D   I +  A+       D    ++A  + G +P     ++ +    A  A    I  + 
Sbjct: 363 DRARIFRFYAQRLKSKAADIDYDQLARLTTGLSPATVAMVVNQAGLIARKAGDSEIASKH 422

Query: 246 ADAALLRLAI 255
              A+    I
Sbjct: 423 FMEAIKIARI 432


>gi|157736546|ref|YP_001489229.1| DNA polymerase III, gamma and tau subunits [Arcobacter butzleri
           RM4018]
 gi|157698400|gb|ABV66560.1| DNA polymerase III, gamma and tau subunits [Arcobacter butzleri
           RM4018]
          Length = 643

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 71/201 (35%), Gaps = 43/201 (21%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLG 66
           +++ + ++       RP+  E+  GQ      L + +++ +     L H  LF G  G G
Sbjct: 1   MNKEILEDRVLALKYRPKRFEDLIGQSTISQTLSLALDSNR-----LSHAYLFSGLRGSG 55

Query: 67  KTTLAQVVARE------------------------LGVNFRSTSGPVIAKAGDLAALLTN 102
           KT+ A+++A+                           ++             D+  L+ +
Sbjct: 56  KTSTARIMAKALLCSQGPTSKPCDICDNCKSANASKHLDIIEMDAASNRGIDDIKDLIEH 115

Query: 103 LEDRD------VLFIDEIHRLSIIVEEILYPAMED--FQLDLMVGEGPSARSVKINLS-- 152
            + +       V  IDE+H L+      L   +E+    +  ++      +     LS  
Sbjct: 116 TKYKPSSARFKVFIIDEVHMLTTQAFNALLKTLEEPPGFVKFILATTDPLKLPATILSRT 175

Query: 153 ---RFTLIAATTRVGLLTNPL 170
              RF  IA +  V  L+  L
Sbjct: 176 QHFRFNKIAQSDVVHHLSYIL 196


>gi|307153166|ref|YP_003888550.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7822]
 gi|306983394|gb|ADN15275.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7822]
          Length = 639

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 62/293 (21%), Positives = 105/293 (35%), Gaps = 28/293 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
             E+  G  EA   L+  +   K         A+    VL +GPPG GKT LA+ +A E 
Sbjct: 185 NFEDVAGIDEAKEELQEVVTFLKQPEKFTAIGAKIPKGVLLIGPPGTGKTLLAKAIAGEA 244

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG           A  +  L    ++    ++FIDEI  +            +
Sbjct: 245 AVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCLVFIDEIDAVGRQRGVSYGGGND 304

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E               +IAAT R  +L   L    RF   + +++ +++
Sbjct: 305 EREQTLNQLLTEMDGFEGNNG----IIIIAATNRPDVLDVALMRPGRFDRQVIVDYPDMK 360

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
               I++  A+   +                T      +L     F      + IT +  
Sbjct: 361 GRLGILEVHARNKRIDSAVSLEAIARRTPGFTGADLANVLNEAAIFTARRRKEAITSQEI 420

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           + A+ R+     G   +D +   +IA +  G       I A L    D +E +
Sbjct: 421 NDAIDRVVAGMEGTPLVDSKAKRLIAYHEIGH-----AIVATLCPGHDTLEKV 468


>gi|297832876|ref|XP_002884320.1| hypothetical protein ARALYDRAFT_896213 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297330160|gb|EFH60579.1| hypothetical protein ARALYDRAFT_896213 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 616

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 62/253 (24%), Positives = 96/253 (37%), Gaps = 27/253 (10%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           +E     E  S L+  I   K  A     VL VGPPG GKT LA+ VA E GV F S S 
Sbjct: 338 DELV---EIVSCLQGSINYKKLGARLPRGVLLVGPPGTGKTLLARAVAGEAGVPFFSVSA 394

Query: 88  PVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
                      A  +  L          ++FIDE+  +        +    D  L+ ++ 
Sbjct: 395 SEFVELFVGRGAARIRDLFNAARKNSPSIIFIDELDAVGGKR-GRSFNDERDQTLNQLLT 453

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAK 197
           E     S      +  +IAAT R   L + L    RF   + +   + E  + I+     
Sbjct: 454 EMDGFESDT----KVIVIAATNRPEALDSALCRPGRFSRKVVVAEPDQEGRRKIL--AVH 507

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD----FAEVAHAKTITREIADAALLRL 253
           L  + + ++A     + +  TP   G  L  + +     A     + + RE    A+ R 
Sbjct: 508 LRDVPLEEDAFLICDLVASLTPGFVGADLANIVNEAALLAARRGGEAVAREDIMEAIERA 567

Query: 254 AIDKMGFDQLDLR 266
              K G +  ++R
Sbjct: 568 ---KFGINDKEVR 577


>gi|302143742|emb|CBI22603.3| unnamed protein product [Vitis vinifera]
          Length = 837

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 44/218 (20%), Positives = 78/218 (35%), Gaps = 43/218 (19%)

Query: 9   SRNVSQEDADISLLRPR---------TLEEFTGQVEACSNLKVFIEAAKARAEALDH--- 56
           +  V  ++     +RP          T ++     +   +L+  +     R +       
Sbjct: 496 AAEVPPDNEFEKRIRPEVIPANEIGVTFDDIGALSDIKESLQELVMLPLRRPDLFKGGLL 555

Query: 57  -----VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLED 105
                +L  GPPG GKT LA+ +A E G +F + S   I          ++ AL T    
Sbjct: 556 KPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAK 615

Query: 106 --RDVLFIDEIH-----RLSIIVEEILYPAMEDF---QLDLMVGEGPSARSVKINLSRFT 155
               ++F+DE+      R  +   E +     +F      L+   G           R  
Sbjct: 616 VSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTKAG----------ERIL 665

Query: 156 LIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           ++AAT R   L   +  RF   I +    +E  + I++
Sbjct: 666 VLAATNRPFDLDEAIIRRFERRIMVGLPSVESREMILK 703


>gi|170761619|ref|YP_001787678.1| stage V sporulation protein K [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169408608|gb|ACA57019.1| stage V sporulation protein K [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 1212

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 53/266 (19%), Positives = 94/266 (35%), Gaps = 27/266 (10%)

Query: 25  RTLEEFTGQVEACSNLKV--FIEAAKARAEALD-HVLFVGPPGLGKTTLAQVVARE---- 77
           ++++++        NLK+    E++  +A  +  H++F G PG GKTT+A++VA+     
Sbjct: 423 KSVKQYV--ESLEDNLKIQKMRESSGFKAANISMHMIFTGNPGTGKTTIARIVAKYLKAL 480

Query: 78  ----LGVNFRSTSGPVIAKAGDLAALLTNLEDRD----VLFIDEIHRLSIIVEEILYPAM 129
                G     T   ++ +     A LTN   +     VLFIDE + L    E+I     
Sbjct: 481 GILSQGQLREVTRADLVGQYVGHTAKLTNDVIKSSLGGVLFIDEAYALCRDKEDIFGIEA 540

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
            D  +  +         +             T  G     L+ RF   I    Y  E++ 
Sbjct: 541 IDTLVKGIEDNREDLVVILAGYKDEMNEFLKTNPG-----LKSRFPNIINFEDYTSEEMY 595

Query: 190 TIV-----QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            I       +G K++              + +G        L R      + +      E
Sbjct: 596 EISLVTAKSKGYKISEDCKEPLIKLFEKRQIKGKNDSGNGRLVRNIIEDSILNQSKRLLE 655

Query: 245 IADAALLRLAIDKMGFDQLDLRYLTM 270
             +A +  L+ D   F++     L  
Sbjct: 656 NPNADMGLLSYDDFEFEETHKFDLEA 681



 Score = 50.5 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 73/198 (36%), Gaps = 47/198 (23%)

Query: 26  TLEEFTGQVEACS----NLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVV 74
           +L E  G            K+ I   K R   ++       +++F G PG GKTT+A++V
Sbjct: 682 SLSEIIGLDNVKDFVRTQYKLLIAQEKRRKAGMNVDTSQALNMIFSGNPGTGKTTIARLV 741

Query: 75  ARELGVNFRSTSGPVIAKAGDLAALLTNLEDRD--------------VLFIDEIHRLS-- 118
           A+         SG ++    D  +L+     +               VLFIDE + LS  
Sbjct: 742 AQMFKEMGLLKSGHLVE--VDRGSLVAEYAGQTSKKTEEVFKSALGGVLFIDEAYALSSD 799

Query: 119 -----IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
                    + L   +ED++ +++V      + +             T      + L+ R
Sbjct: 800 SSGFGKEAIDTLVKLIEDYRGEIIVILAGYKKEM-------------TEFLKTNSGLKSR 846

Query: 174 FGIPIRLNFYEIEDLKTI 191
           F + I    Y  E+L  I
Sbjct: 847 FPLNIDFPDYTAEELFKI 864



 Score = 39.3 bits (90), Expect = 0.96,   Method: Composition-based stats.
 Identities = 53/289 (18%), Positives = 95/289 (32%), Gaps = 53/289 (18%)

Query: 1    MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALD----- 55
            M+  + +   N S  + D+     + L +  G  E    +       + + E        
Sbjct: 932  MIINDDIEQENKSTTNFDLE----KELSKIVGLQEVKDYISSLSARLRMQNERKKLGLTV 987

Query: 56   ------HVLFVGPPGLGKTTLAQVVAR--ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD 107
                  H++F G PG GKT +A+ VA         ++       ++G +A  +     + 
Sbjct: 988  DTTQTLHMIFKGNPGTGKTMVARTVAEVLYNIGVIKTNKLVETDRSGLVAGYVGQTAMKT 1047

Query: 108  ----------VLFIDEIHRLS--------IIVEEILYPAMEDFQLDLMVGEGPSARSVKI 149
                      VLFIDE + LS            + L   M+D++  ++V     +  +  
Sbjct: 1048 REKVMEAMDGVLFIDEAYSLSQGGANDFGKEAIDTLVKLMDDYRDRIVVILAGYSHDMDQ 1107

Query: 150  NLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ---RGAKLTGLAVTDE 206
             LS             +   L+ RF   I    Y   +L  I +   +        + + 
Sbjct: 1108 FLS-------------VNAGLKSRFPNVINFEDYSTNELMQIAEMLFKSKGYELNLLAEN 1154

Query: 207  AACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255
               +I    R  P+      R VR+  E A      R   D  L +  +
Sbjct: 1155 KLKDIFNAVRLEPQFGNG--RYVRNLYERAVNNQAMRLSTDMDLTKEEL 1201


>gi|73544229|ref|XP_848009.1| replication factor C, subunit 4 [Leishmania major strain Friedlin]
 gi|321438363|emb|CBZ12115.1| putative replication factor C, subunit 4 [Leishmania major strain
           Friedlin]
          Length = 360

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 51/312 (16%), Positives = 94/312 (30%), Gaps = 77/312 (24%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+T+ +  G  EA S L+V      A+   L ++L  GPPG GKTT    +AR
Sbjct: 7   PWVEKYRPQTVVDIVGNTEAISRLQVI-----AKQGNLPNLLLCGPPGTGKTTSMLCLAR 61

Query: 77  -----------------------------ELGVNFRSTSGPVIAKAGDLAALLTNLEDR- 106
                                        EL  +       V  K    A     L  + 
Sbjct: 62  DLLLQSTDTGSAGASPGGAMKDILKDAVLELNASDDRGLDVVREKIKLFAQTKKTLPKKF 121

Query: 107 -----------------DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKI 149
                             ++ +DE   ++   ++ L                   R++++
Sbjct: 122 FSTGEGVAKDDHVVHLHKIVLLDEADSMTPAAQQALR------------------RTMEL 163

Query: 150 NLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAAC 209
           + S      A      +  P+Q R  +       + + LK +V    +   ++ TD+   
Sbjct: 164 HSSTTRFAFACNNSSRIIEPIQSRCAVVRFKKLSDADILKRLV-YVIQHENVSYTDDGLE 222

Query: 210 EIAMRSRGTPRIAGRLLRRVRD-FAEVAHAKTITREIADAALLRLAID-----KMGFDQL 263
            +   + G  R A   L+     +  V              LL   +      K   ++ 
Sbjct: 223 ALLYLAEGDLRQALNALQATHTGYGLVNADNVFKVCDQPHPLLVENVITACVTKRNIEEA 282

Query: 264 DLRYLTMIARNF 275
                 ++ R +
Sbjct: 283 HREMNRLLNRGY 294


>gi|313897534|ref|ZP_07831076.1| cell division protease FtsH [Clostridium sp. HGF2]
 gi|312957486|gb|EFR39112.1| cell division protease FtsH [Clostridium sp. HGF2]
          Length = 617

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 52/194 (26%), Positives = 78/194 (40%), Gaps = 27/194 (13%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +T  +  GQ EA + L+  +E  K+        A+     L VGPPG GKT LA+ VA E
Sbjct: 165 KTFLDVAGQEEAKAALQEMVEFLKSPQRYTQIGAQMPKGALLVGPPGTGKTLLAKAVAGE 224

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
             V F S SG           A  +  L     ++   ++FIDEI  +    +       
Sbjct: 225 ANVPFFSISGSEFVEMFVGRGAARVRDLFKQAREKAPCIVFIDEIDTIGKKRDGAGVGGN 284

Query: 130 EDFQLD----LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183
           ++ +      L   +G    +  I L      AAT R   L   L    RF   I ++  
Sbjct: 285 DEREQTLNQLLAEMDGFDGSTGVILL------AATNRPESLDQALLRPGRFDRRIPVDLP 338

Query: 184 EIEDLKTIVQRGAK 197
           ++   + I+Q  AK
Sbjct: 339 DLAGRQAILQVHAK 352


>gi|299743241|ref|XP_001835627.2| ATPase [Coprinopsis cinerea okayama7#130]
 gi|298405567|gb|EAU86198.2| ATPase [Coprinopsis cinerea okayama7#130]
          Length = 360

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 55/261 (21%), Positives = 96/261 (36%), Gaps = 28/261 (10%)

Query: 26  TLEEFTGQVEACSNLK----------VFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           T ++  G     S+L+              A+ +   A   VL  GPPG GKT +A+ +A
Sbjct: 80  TFKDIGGLDHIVSSLRESVIYPLLYPNLFTASSSLLGAPKGVLLFGPPGCGKTMMAKALA 139

Query: 76  RELGVNFRSTSGPVI-----AKAGDLAALLTNLEDR---DVLFIDEIHRLSIIVEEILYP 127
           +E G  F + +  V+      ++  L A L +L  +    ++FIDEI        +  + 
Sbjct: 140 KESGATFINIAASVLTNKWYGESNKLVAGLFSLARKVQPSIIFIDEIDSFLRERTKGDHE 199

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
                + + M        S      R  ++ AT R   + + +  R      +     + 
Sbjct: 200 VTGMMKAEFMTLWDGLTSSTD----RILVLGATNRPNDIDSAILRRMPKRFAVGLPNYDQ 255

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV-RDFAEVAHAKTITREIA 246
              I+Q    L       + + E    ++ T   +G  LR + R+ A V   + +     
Sbjct: 256 RLKILQ--LMLKDTKTEPDFSVE--QLAQHTTGFSGSDLRELCRNAAMVPVREYMRSAEG 311

Query: 247 DAALLRLAIDKMGFDQLDLRY 267
           +  LL       GFD   LR 
Sbjct: 312 NEELLAKGQ-LEGFDLRPLRL 331


>gi|170780614|ref|YP_001708946.1| DNA polymerase III subunits gamma and tau [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169155182|emb|CAQ00282.1| DNA polymerase III subunit gamma [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 837

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 42/147 (28%), Gaps = 36/147 (24%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           A     RP    E  GQ +    L+  +   +         LF GP G GKTT A+++AR
Sbjct: 11  ALYRRYRPENFAELIGQTQVTDPLRTALRTNRVNHAY----LFSGPRGCGKTTSARILAR 66

Query: 77  ELGV--------------------------NFRSTSGPVIAKAGDLAALLTNL------E 104
            L                            +             D   +          +
Sbjct: 67  CLNCAEGPTDTPCGVCPSCVELSRDGSGSLDVVEIDAASHNGVDDARDIRERAVFAPARD 126

Query: 105 DRDVLFIDEIHRLSIIVEEILYPAMED 131
              +  +DE H ++      L   +E+
Sbjct: 127 RYKIFILDEAHMVTPQGFNALLKIVEE 153


>gi|152964507|ref|YP_001360291.1| ATP-dependent metalloprotease FtsH [Kineococcus radiotolerans
           SRS30216]
 gi|151359024|gb|ABS02027.1| ATP-dependent metalloprotease FtsH [Kineococcus radiotolerans
           SRS30216]
          Length = 659

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 65/287 (22%), Positives = 102/287 (35%), Gaps = 30/287 (10%)

Query: 25  RTLEEFTGQVEACSNL---KVFIEAAKA----RAEALDHVLFVGPPGLGKTTLAQVVARE 77
            T  +  G  EA   L   K F++ +       A+    VL  GPPG GKT LA+ VA E
Sbjct: 164 TTFADVAGADEAVEELHEIKEFLQDSSKFLAVGAKIPKGVLLYGPPGTGKTLLARAVAGE 223

Query: 78  LGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM 129
            GV F S SG       V   A  +  L    +     ++F+DEI  +       +    
Sbjct: 224 AGVPFYSISGSDFVEMFVGVGASRVRDLFEQAKTNAPAIIFVDEIDAVGRHRGAGMGGGH 283

Query: 130 EDFQLD----LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183
           ++ +      L+  +G   ++  I       IAAT R  +L   L    RF   I +   
Sbjct: 284 DEREQTLNQLLVEMDGFDVKTNVIL------IAATNRPDILDPALLRPGRFDRQIAVEAP 337

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           ++E    I++   K   L+   +           +      +L         A AK I  
Sbjct: 338 DMEGRHQILKVHGKGKPLSPDIDLLAVARRTPGFSGADLANVLNEAALLTARADAKVIDN 397

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
              D A+ R+     G  +   R      R       G   ++A ++
Sbjct: 398 SALDEAIDRVMA---GPQKRTRRMNEKELRVTAYHEGGHALVAAAMA 441


>gi|319654928|ref|ZP_08009002.1| cell division protein ftsH [Bacillus sp. 2_A_57_CT2]
 gi|317393353|gb|EFV74117.1| cell division protein ftsH [Bacillus sp. 2_A_57_CT2]
          Length = 663

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 61/248 (24%), Positives = 92/248 (37%), Gaps = 27/248 (10%)

Query: 26  TLEEFTG-----QV--EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
             ++  G     Q   E    LK   + A+  A     VL VGPPG GKT LA+  A E 
Sbjct: 160 RFKDVAGADEEKQELVEVVEFLKDPRKFAELGARIPKGVLLVGPPGTGKTLLARAAAGEA 219

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG       V   A  +  L  N +     ++FIDEI  +       L    +
Sbjct: 220 GVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCIIFIDEIDAVGRQRGAGLGGGHD 279

Query: 131 DFQLD----LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
           + +      L+  +G  A    I      +IAAT R  +L   L    RF   I ++  +
Sbjct: 280 EREQTLNQLLVEMDGFGANEGII------IIAATNRPDILDPALLRPGRFDRQITVDRPD 333

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           ++  + +++  A+   L  +             +      LL      A   + K +  E
Sbjct: 334 VKGREAVLKVHARNKPLDESVNLKSIAMRTPGFSGADLENLLNEAALVAARRNKKKVDME 393

Query: 245 IADAALLR 252
             D A  R
Sbjct: 394 DIDEATDR 401


>gi|298250644|ref|ZP_06974448.1| Microtubule-severing ATPase [Ktedonobacter racemifer DSM 44963]
 gi|297548648|gb|EFH82515.1| Microtubule-severing ATPase [Ktedonobacter racemifer DSM 44963]
          Length = 443

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 50/240 (20%), Positives = 89/240 (37%), Gaps = 34/240 (14%)

Query: 17  ADISLLRPR-TLEEFTGQVEACSNLK-----------VFIEAAKARAEALDHVLFVGPPG 64
            D +L RPR + ++  G  E   N+K           +F    K        +L  GPPG
Sbjct: 153 QDDALERPRVSFKDVGGLEELKENIKMNIIYPFQNPSLFKTFGKKVGGG---ILLYGPPG 209

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHR 116
            GKT LA+  A E    F + +   I          +L A+          ++FIDE+  
Sbjct: 210 CGKTFLARATAGECNARFINIAIDDILDMYIGNSEKNLHAVFELARKHTPAIIFIDELDA 269

Query: 117 LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RF 174
           L    +++ Y         L+         V+ + S   ++ AT     + + L+   RF
Sbjct: 270 LGGSRQQMRYQNNRMLTNQLLSELDG----VESDNSEILVLGATNSPWFVDSSLRRPGRF 325

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
              + +   +++    I+Q       L      A +    ++G  + +G  ++ V D A 
Sbjct: 326 DRVLFVPPPDLQARVEILQ-----LHLKDKPLEALDYVKLAKGMEKFSGADIKAVCDAAA 380


>gi|313125638|ref|YP_004035908.1| replication factor c large subunit [Halogeometricum borinquense DSM
           11551]
 gi|312292003|gb|ADQ66463.1| replication factor C large subunit [Halogeometricum borinquense DSM
           11551]
          Length = 487

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 51/256 (19%), Positives = 88/256 (34%), Gaps = 38/256 (14%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
                RP TL E  G  +A   L  + +      EA   V+  G PG+GKT+ A  +A +
Sbjct: 4   WTEKYRPSTLAEVRGNNKARDALAEWGKTWDDHREA---VVLHGAPGVGKTSAAHALAND 60

Query: 78  LGVNF------RSTSGPVIAKAGDLAALLTNL------------EDRDVLFIDEIHRLSI 119
           +G            +  VI +    AA+ T L            E R ++ +DE   +  
Sbjct: 61  MGWETVELNASDQRTADVIERFAGRAAMNTTLAGASAGDANGEREGRQLVIMDEADNIHG 120

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179
             +                G G   R VK +     LIA       +++ L+        
Sbjct: 121 NYDRG--------------GAGAITRLVKKSNQPIVLIA--NEYYDMSSGLRSATREIEF 164

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
            +      +  +++   +  G+    +A   IA  + G  R A + L+   D A+    +
Sbjct: 165 RDV-SARSIVPVLRDILRKEGIEFDSDALDRIAETNSGDLRSAVKDLQAAADGADRLTVE 223

Query: 240 TITREIADAALLRLAI 255
            +     D A+     
Sbjct: 224 DVVTGSRDKAIGLFEY 239


>gi|218290817|ref|ZP_03494886.1| ATP-dependent protease La [Alicyclobacillus acidocaldarius LAA1]
 gi|218239175|gb|EED06376.1| ATP-dependent protease La [Alicyclobacillus acidocaldarius LAA1]
          Length = 811

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 50/246 (20%), Positives = 82/246 (33%), Gaps = 37/246 (15%)

Query: 28  EEFTGQVEACSNLKVFIE-AAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTS 86
           EE  G  +    +  FI   A    +A   +   GPPG+GKT+LA+ +A+ L   F   S
Sbjct: 328 EEHYGLDKVKERILEFIAVQALTDKQAGPIICLAGPPGVGKTSLARSIAKSLKRPFVRVS 387

Query: 87  GPVIAKAGDLA------------ALLTNLED----RDVLFIDEIHRL--------SIIVE 122
              +    ++              +L  +        V  +DEI ++        +  + 
Sbjct: 388 LGGVRDEAEIRGHRRTYIGSMPGRILQGMRQAGVINPVFLLDEIDKMASDFRGDPASAML 447

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P       D  +        +  +LS    I     V  +  PL+DR  I     +
Sbjct: 448 EVLDPEQNHAFSDHYIE-------IPYDLSNVLFITTANNVYQIPAPLRDRMEIIQLSGY 500

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            EIE L       A+   L     A      R R +  +   ++R     A V       
Sbjct: 501 TEIEKLH-----IAREHLLPKQRAAHALKGDRIRISDDVLLEIIRHYTREAGVRQLDRQL 555

Query: 243 REIADA 248
             +   
Sbjct: 556 AAVCRK 561


>gi|225464692|ref|XP_002277515.1| PREDICTED: hypothetical protein isoform 2 [Vitis vinifera]
          Length = 835

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 44/218 (20%), Positives = 78/218 (35%), Gaps = 43/218 (19%)

Query: 9   SRNVSQEDADISLLRPR---------TLEEFTGQVEACSNLKVFIEAAKARAEALDH--- 56
           +  V  ++     +RP          T ++     +   +L+  +     R +       
Sbjct: 494 AAEVPPDNEFEKRIRPEVIPANEIGVTFDDIGALSDIKESLQELVMLPLRRPDLFKGGLL 553

Query: 57  -----VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLED 105
                +L  GPPG GKT LA+ +A E G +F + S   I          ++ AL T    
Sbjct: 554 KPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAK 613

Query: 106 --RDVLFIDEIH-----RLSIIVEEILYPAMEDF---QLDLMVGEGPSARSVKINLSRFT 155
               ++F+DE+      R  +   E +     +F      L+   G           R  
Sbjct: 614 VSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTKAG----------ERIL 663

Query: 156 LIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           ++AAT R   L   +  RF   I +    +E  + I++
Sbjct: 664 VLAATNRPFDLDEAIIRRFERRIMVGLPSVESREMILK 701


>gi|153813325|ref|ZP_01965993.1| hypothetical protein RUMOBE_03742 [Ruminococcus obeum ATCC 29174]
 gi|149830615|gb|EDM85706.1| hypothetical protein RUMOBE_03742 [Ruminococcus obeum ATCC 29174]
          Length = 687

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 54/257 (21%), Positives = 97/257 (37%), Gaps = 23/257 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEA-------LDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ EA  +L+  ++      +            L VGPPG GKT LA+ VA E 
Sbjct: 183 TFKDVAGQEEAKESLQEVVDFLHNPGKYTAIGAKLPKGALLVGPPGTGKTLLAKAVAGEA 242

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG           A  +  L    +     ++FIDEI  +    +       +
Sbjct: 243 NVPFFSLSGSEFVEMFVGVGASRVRDLFEEAKKNAPCIVFIDEIDAIGKSRDSRYGGGND 302

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E     + K  L    ++AAT R  +L   L    RF   I ++  +++
Sbjct: 303 EREQTLNQLLAEMDGFDTSKGLL----ILAATNRPEVLDPALLRPGRFDRRIIVDRPDLK 358

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
               I++  AK   L  T          S         ++      A     + ++++  
Sbjct: 359 GRVEILKVHAKNVMLDETVNLEAIALATSGAVGSDLANMINEAAILAVKNGRRAVSQKDL 418

Query: 247 DAALLRLAIDKMGFDQL 263
             ++  + + K   D++
Sbjct: 419 QESVEVVLVGKEKKDRI 435


>gi|268555362|ref|XP_002635669.1| C. briggsae CBR-FIGL-1 protein [Caenorhabditis briggsae]
 gi|75005140|sp|Q60QD1|FIGL1_CAEBR RecName: Full=Fidgetin-like protein 1
 gi|187022331|emb|CAP38575.1| CBR-FIGL-1 protein [Caenorhabditis briggsae AF16]
          Length = 591

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 79/222 (35%), Gaps = 21/222 (9%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAE-------ALDHVLFVGPPGLGKTTLAQVVARELGV 80
            +  G   A   LK  +     R +           VL  GPPG GKT + + VA +   
Sbjct: 316 ADVAGLEGAKKALKEIVVLPFQRPDIFTGLRAPPKGVLLFGPPGTGKTMIGRCVASQAQA 375

Query: 81  NFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAMEDF 132
            F + S   +           + AL +    +   V+FIDEI  L     E  + +    
Sbjct: 376 TFFNISASSLTSKWVGEGEKLVRALFSVARLKLPSVIFIDEIDSLLSARSESEHESSRRI 435

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           + + +V              R  ++ AT R   L    + RF   + +   E +    IV
Sbjct: 436 KTEFLVQLDG---VNTAPDERLLVLGATNRPQELDEAARRRFQKRLYIALPEPDSRTQIV 492

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
           +   + T   +TD    +I    R T   +G  +R++   A 
Sbjct: 493 ENLLRGTRHEITDHNLEKIR---RLTDGYSGADMRQLCTEAA 531


>gi|17508053|ref|NP_492211.1| Cell Division Cycle related family member (cdc-48.3)
           [Caenorhabditis elegans]
 gi|3878262|emb|CAB00040.1| C. elegans protein K04G2.3, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 724

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 59/291 (20%), Positives = 96/291 (32%), Gaps = 44/291 (15%)

Query: 21  LLRPRTLEEFT------------GQVEACSNLKVFI-------EAAKARA-EALDHVLFV 60
            +RP  + +F             G  E    ++  +       EA +    +    +L  
Sbjct: 440 RIRPTGIRQFILEVPNVSWNDIGGNEELKLEIQQAVIWPQKHPEAFERFGIDPPAGILLY 499

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLAALLTNLEDR------DVLFID 112
           GPPG  KT +A+ +A E  +NF +  GP +     GD    + +L  R       ++F D
Sbjct: 500 GPPGCSKTLIARALASEAKMNFLAVKGPELFSKWVGDSEKAIRDLFSRARQVAPTIVFFD 559

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           EI  +           + D  L  ++ E           SR  L+AAT R   L + L  
Sbjct: 560 EIDAVGSSRGSEKSSGVSDRVLAQLLTELDGLEKS----SRVILLAATNRPDQLDSALLR 615

Query: 173 --RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAM-RSRGTPRIAGRLLRRV 229
             R    I +        + I++   K      T     ++    S  +      + R  
Sbjct: 616 PGRLDRAIYVGLPCEVTRRAILEMRTKKMKFDDTVRTIDKLVEKTSGYSGAELVAVCRTA 675

Query: 230 RDFA--EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
             FA  E   A  +     + AL  +             YL  I  +F  G
Sbjct: 676 AMFAMRESIDATIVQWTHFEQALAAVVSRTEA-------YLLEIYDDFKAG 719


>gi|167036728|ref|YP_001664306.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|167039447|ref|YP_001662432.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter sp. X514]
 gi|256751850|ref|ZP_05492722.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|300915473|ref|ZP_07132786.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter sp. X561]
 gi|307725228|ref|YP_003904979.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter sp. X513]
 gi|320115150|ref|YP_004185309.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|310943091|sp|B0K5A3|FTSH1_THEPX RecName: Full=ATP-dependent zinc metalloprotease FtsH 1
 gi|166853687|gb|ABY92096.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter sp. X514]
 gi|166855562|gb|ABY93970.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|256749257|gb|EEU62289.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|300888533|gb|EFK83682.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter sp. X561]
 gi|307582289|gb|ADN55688.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter sp. X513]
 gi|319928241|gb|ADV78926.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 611

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 61/246 (24%), Positives = 90/246 (36%), Gaps = 23/246 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEAL-------DHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  E    L+  +E  K   + L         VL VGPPG GKT LA+ VA E 
Sbjct: 159 TFNDVAGADEEKEELQEIVEFLKYPKKFLELGARIPKGVLLVGPPGTGKTLLAKAVAGEA 218

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG       V   A  +  L    +     ++FIDEI  +       L    +
Sbjct: 219 GVPFFSISGSDFVEMFVGVGAARVRDLFDQAKKNAPCIVFIDEIDAVGRQRGAGLGGGHD 278

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E       +       +IAAT R  +L   L    RF   I +   +I+
Sbjct: 279 EREQTLNQLLVEMDGFSVNEG----IIVIAATNRPDILDPALLRPGRFDRHITVGIPDIK 334

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++  ++   LA               T      L+      A     K IT    
Sbjct: 335 GREEILKIHSRNKPLAPDVSLQVLARRTPGFTGADLENLMNEAALLAARRGLKQITMAEL 394

Query: 247 DAALLR 252
           + A+ R
Sbjct: 395 EEAITR 400


>gi|327404287|ref|YP_004345125.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Fluviicola
           taffensis DSM 16823]
 gi|327319795|gb|AEA44287.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Fluviicola
           taffensis DSM 16823]
          Length = 406

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 38/143 (26%), Positives = 64/143 (44%), Gaps = 28/143 (19%)

Query: 9   SRNVSQEDADISLLRPR----TLEEF-TGQVEACSNLKVFIEAAKARAEAL--------- 54
           S  VS E A +++L+P+     L+E+  GQ +A   L V +     R             
Sbjct: 46  STKVSSESAPVNVLKPQDIKERLDEYVIGQDDAKKTLSVAVYNHYKRLHQTKIEDVEIEK 105

Query: 55  DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLT--------- 101
            +V+ VG  G GKT LA+ +A+ L V F      V+ +AG    D+ ++L+         
Sbjct: 106 SNVILVGRTGTGKTLLAKTIAKMLNVPFCIADATVLTEAGYVGEDVESILSRLLQAADYN 165

Query: 102 -NLEDRDVLFIDEIHRLSIIVEE 123
                  ++FIDEI +++   + 
Sbjct: 166 VQAAQHGIVFIDEIDKIARKSDN 188


>gi|302755941|ref|XP_002961394.1| hypothetical protein SELMODRAFT_164653 [Selaginella moellendorffii]
 gi|302798232|ref|XP_002980876.1| hypothetical protein SELMODRAFT_178441 [Selaginella moellendorffii]
 gi|300151415|gb|EFJ18061.1| hypothetical protein SELMODRAFT_178441 [Selaginella moellendorffii]
 gi|300170053|gb|EFJ36654.1| hypothetical protein SELMODRAFT_164653 [Selaginella moellendorffii]
          Length = 661

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 58/259 (22%), Positives = 99/259 (38%), Gaps = 29/259 (11%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGP 62
           +  ++E      +  +T ++  G  EA + L+  ++  +          +    VL VGP
Sbjct: 202 KEFNKETMPEKNM--KTFQDVKGCDEAKAELEEIVQYLRNPAKFTRLGGKLPKGVLLVGP 259

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIA------KAGDLAALLTNLEDRD--VLFIDEI 114
           PG GKT LA+ +A E GV F   +G           A  +  L    + +   ++FIDEI
Sbjct: 260 PGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRTLFQTAKKKAPCIVFIDEI 319

Query: 115 HRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-- 172
             +    +       +     L+  +G  A    I L      AAT     L   L    
Sbjct: 320 DAVGSSRKNWEGHTKKTLNQLLVEMDGFEANEGIIVL------AATNLPESLDPALTRPG 373

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           RF   + +   ++   + I++   K   L        ++   +RGTP  +G  L  + + 
Sbjct: 374 RFDRHVVVPNPDVRGRQDILELYLKDKPLMDD----VDVKCIARGTPGFSGADLANLVNM 429

Query: 233 AEVAHAKTITREIADAALL 251
           A V  A   T +I+   L 
Sbjct: 430 AAVKAALDGTDKISSDQLE 448


>gi|299066493|emb|CBJ37683.1| Cell division protein, ATP-dependent zinc-metallo protease; AAA
           ATPase and peptidase M41 families [Ralstonia
           solanacearum CMR15]
          Length = 628

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 85/220 (38%), Gaps = 16/220 (7%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLT 101
           K        VL VGPPG GKT LA+ +A E  V F S SG       V   A  +  +  
Sbjct: 181 KLGGRIPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEMFVGVGAARVRDMFE 240

Query: 102 NLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDL--MVGEGPSARSVKINLSRFTLI 157
           N + +   ++FIDEI  +       +    ++ +  L  M+ E     +     S   +I
Sbjct: 241 NAKKQAPCIVFIDEIDAVGRHRGAGMGGGNDEREQTLNQMLVEMDGFEAN----SGVIVI 296

Query: 158 AATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRS 215
           AAT R  +L   L    RF   + +   +I   + I++   +   +    +A+       
Sbjct: 297 AATNRADVLDKALLRPGRFDRQVYVGLPDIRGREQILKVHMRKVPIGNDVDASVLARGTP 356

Query: 216 RGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255
             +      L+     FA   + + +  +  + A  ++ +
Sbjct: 357 GFSGADLANLVNEAALFAARRNKRVVDMQDFEDAKDKIYM 396


>gi|225464690|ref|XP_002275604.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 788

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 45/215 (20%), Positives = 78/215 (36%), Gaps = 37/215 (17%)

Query: 9   SRNVSQEDADISLLRPR---------TLEEFTGQVEACSNLKVFIEAAKARAEALDH--- 56
           S+   + +   S +RP          T ++     +   +L+  +     R E       
Sbjct: 447 SKVFPRCNEFESRIRPEVIPPNRIGVTFDDIGALDDIKESLEELVMFPLQRPEIFKGGLL 506

Query: 57  -----VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLED 105
                +L  GPPG GKT LA+ +A E G +F + S   I          ++ AL T    
Sbjct: 507 KPCRGILLFGPPGTGKTMLAKAMANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAK 566

Query: 106 --RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINL-----SRFTLIA 158
               ++F+DE+  +            ED  +  +  E     +    L      R  ++A
Sbjct: 567 ISPTIIFVDEVDSMLGQR----LEFGEDCSMRKIKNE---FMTHWDGLLTKAGERVLVLA 619

Query: 159 ATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           AT R   L   +  RF   I +    +E  + I++
Sbjct: 620 ATNRPFDLDEAIIRRFDHRIMVGLPSVESREMILK 654


>gi|225320703|dbj|BAH29747.1| valosin-containing protein [Dicyema japonicum]
 gi|298916886|dbj|BAJ09740.1| valosin-containing protein [Dicyema japonicum]
          Length = 424

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 79/226 (34%), Gaps = 21/226 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEA--------AKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           T ++  G       L+  ++         AK    +   VLF GPPG GKT LA+ +A E
Sbjct: 116 TWDDIGGLDSVKRELQELVQYPVEYQEKFAKYGLSSSKGVLFYGPPGCGKTLLAKAIAHE 175

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
              NF S  GP +          ++  +          +LF DE+  ++           
Sbjct: 176 CQANFISIKGPELLTMWFGESEANIRDIFDKARQASPCILFFDELDSIAKSRGGT---PG 232

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
           +    D ++ +  +            +I AT R  ++   +    R    I +   + + 
Sbjct: 233 DSGAGDRVINQLLTEMDGMSPKKNVFIIGATNRPDIIDGAIIRPGRLDQLIYIPLPDEKS 292

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
              I +   + + +  + + +  + + +  +      + +R    A
Sbjct: 293 RMQIFKATLRKSPVNDSVDFSQLVKLTAGFSGADITEICQRACKLA 338


>gi|224372201|ref|YP_002606573.1| HpFtsH [Nautilia profundicola AmH]
 gi|223588557|gb|ACM92293.1| HpFtsH [Nautilia profundicola AmH]
          Length = 640

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 55/262 (20%), Positives = 91/262 (34%), Gaps = 27/262 (10%)

Query: 26  TLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
             ++  G  EA   +K  +          +  A+    VL VGPPG GKT LA+ VA E 
Sbjct: 172 KFDDVAGNDEAKEEVKEIVDFLKHPDRYIELGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 231

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVE---EILYP 127
            V F + SG       V   A  +  L    +     ++FIDEI  +        +    
Sbjct: 232 DVPFFAVSGSSFIEMFVGVGAARVRDLFNQAKKEAPSIIFIDEIDAIGKSRAAAGQFGGN 291

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
              +  L+ ++ E     S +       ++AAT R  +L   L    RF   + ++  + 
Sbjct: 292 DEREQTLNQLLAEMDGFDSNE----PVIVLAATNRPEVLDPALLRPGRFDRQVLVDKPDF 347

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           E    I+Q   K        +      M +         ++      A     K + +E 
Sbjct: 348 EGRVQILQVHVKKIKAGKDVDLREIAKMTAGLAGADLANIVNEAALLAGRKGKKEVNQEE 407

Query: 246 ADAALLRLAIDKMGFDQLDLRY 267
              A+ R      G ++   R 
Sbjct: 408 FVEAVERQIA---GLEKKSRRL 426


>gi|161525193|ref|YP_001580205.1| ATP-dependent metalloprotease FtsH [Burkholderia multivorans ATCC
           17616]
 gi|189350068|ref|YP_001945696.1| cell division protease [Burkholderia multivorans ATCC 17616]
 gi|221201969|ref|ZP_03575005.1| cell division protease FtsH [Burkholderia multivorans CGD2M]
 gi|221204901|ref|ZP_03577918.1| ATP-dependent metallopeptidase HflB subfamily [Burkholderia
           multivorans CGD2]
 gi|221213878|ref|ZP_03586851.1| cell division protease FtsH [Burkholderia multivorans CGD1]
 gi|160342622|gb|ABX15708.1| ATP-dependent metalloprotease FtsH [Burkholderia multivorans ATCC
           17616]
 gi|189334090|dbj|BAG43160.1| cell division protease [Burkholderia multivorans ATCC 17616]
 gi|221166055|gb|EED98528.1| cell division protease FtsH [Burkholderia multivorans CGD1]
 gi|221175758|gb|EEE08188.1| ATP-dependent metallopeptidase HflB subfamily [Burkholderia
           multivorans CGD2]
 gi|221178052|gb|EEE10463.1| cell division protease FtsH [Burkholderia multivorans CGD2M]
          Length = 631

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 90/249 (36%), Gaps = 23/249 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAA-------KARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G  EA   +   ++         K        VL VGPPG GKT LA+ +A E 
Sbjct: 152 NFSDVAGCDEAKEEVSELVDFLRDPQKFQKLGGRIPRGVLLVGPPGTGKTLLARAIAGEA 211

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  +    +     ++FIDEI  +       +    +
Sbjct: 212 KVPFFSISGSDFVEMFVGVGAARVRDMFEQAKKHAPCIVFIDEIDAVGRHRGAGMGGGND 271

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  M+ E     +     S   +IAAT R  +L   L    RF   + +   +I 
Sbjct: 272 EREQTLNQMLVEMDGFEAN----SGVIVIAATNRSDVLDKALLRPGRFDRQVYVGLPDIR 327

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++   +   +A   +AA         +      L+     FA     + +  +  
Sbjct: 328 GREQIMRVHLRKVPIANDVDAAVIARGTPGFSGADLANLVNEAALFAARRGKRIVEMQDF 387

Query: 247 DAALLRLAI 255
           + A  ++ +
Sbjct: 388 EDAKDKIFM 396


>gi|308800808|ref|XP_003075185.1| Nuclear AAA ATPase (VCP subfamily) (ISS) [Ostreococcus tauri]
 gi|116061739|emb|CAL52457.1| Nuclear AAA ATPase (VCP subfamily) (ISS) [Ostreococcus tauri]
          Length = 566

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 52/190 (27%), Positives = 79/190 (41%), Gaps = 26/190 (13%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDHV--------LFVGPPGLGKTTLAQVVARE 77
             ++  G  E  + LK  +E A+   EA+  V        L  GPPG  KT LA+ VA  
Sbjct: 299 RWDDVGGLEEVKNRLKEAVEWAEKHPEAMKRVGATPPKGILLYGPPGCSKTMLARAVANA 358

Query: 78  LGVNFRSTSGPVI--AKAGDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILY--- 126
            G NF S  G  +     GD    + ++  R       V+FIDE+  L+           
Sbjct: 359 SGRNFISIKGSELFSKWVGDSEKAVRSVFARARSSQPCVIFIDEVDGLAGTRGGGEQGGA 418

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIR-LNFY 183
           P+++D  +  ++GE              T++AAT R  L+ + L    RF   +      
Sbjct: 419 PSVQDRVITQLLGE----MDGLAPTVNVTIVAATNRPDLVDSALLRPGRFDRLLYVPPPS 474

Query: 184 EIEDLKTIVQ 193
            IED  +I+Q
Sbjct: 475 SIEDRLSILQ 484


>gi|332982883|ref|YP_004464324.1| ATP-dependent metalloprotease FtsH [Mahella australiensis 50-1 BON]
 gi|332700561|gb|AEE97502.1| ATP-dependent metalloprotease FtsH [Mahella australiensis 50-1 BON]
          Length = 595

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 63/285 (22%), Positives = 106/285 (37%), Gaps = 40/285 (14%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPG 64
           V  +D DIS++     +   G  EA  +L   +       + AK  A     V+  GPPG
Sbjct: 142 VKPKDEDISVV---KFDSVAGNQEAKESLAELVDFIKEPEKYAKYGARIPRGVILYGPPG 198

Query: 65  LGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLED--RDVLFIDEIHR 116
            GKT LA+ +A E GV F + SG       V   A  + +L     +  + V+FIDEI  
Sbjct: 199 TGKTLLARALAGEAGVPFYAVSGSDFVQMYVGVGAARIRSLFKKAREQGKCVIFIDEIDA 258

Query: 117 LSIIVEEILYPA---MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD- 172
           L                D  L+ ++ E       +       ++AAT R+ +L   L   
Sbjct: 259 LGKKRNGGRMDGGSDERDQTLNALLAEMSGFNENQG----IVIMAATNRLDVLDEALLRP 314

Query: 173 -RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            RF   I +   ++     I+    KL           ++   ++ T   +G  L  + +
Sbjct: 315 GRFDRQIEVGLPDVNGRHKIL----KLHSGNKPIAPEVDLWKVAQQTVYFSGAQLESMLN 370

Query: 232 FAEVAHAKTITREIADAALLRLAI---------DKMGFDQLDLRY 267
            A +  AK     I  + + +            D+    ++D + 
Sbjct: 371 EAAIIAAKRDAESIEMSDIDKAFYTVIAGAEKTDRSAISEIDRKI 415


>gi|296162408|ref|ZP_06845200.1| AAA ATPase central domain protein [Burkholderia sp. Ch1-1]
 gi|295887327|gb|EFG67153.1| AAA ATPase central domain protein [Burkholderia sp. Ch1-1]
          Length = 636

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 57/251 (22%), Positives = 95/251 (37%), Gaps = 26/251 (10%)

Query: 26  TLEEFTGQVEACSNL---KVFIEAAKA----RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
             ++  G  EA + L   + ++   K        A   +L VG PG+GKT LAQ +A E 
Sbjct: 190 RFDDVIGASEAKAALADIRSYLSDPKQFTSMGVRAPCGILMVGGPGVGKTRLAQALAGEC 249

Query: 79  GVNFRSTSGP---------VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP-- 127
           G NF S +G           I K   L  L        V+FIDE   L+   +    P  
Sbjct: 250 GANFISITGSYFSAKYYGVGIQKVKHLFELARKNAP-TVIFIDEADGLAKRTDTGGGPVE 308

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           A  +  ++ ++ E     S +       ++AAT     L   L+   RF   +++   + 
Sbjct: 309 AESNRIINQLLAEMDGFASNEG----VIIVAATNHPDNLDEALRRPGRFDRTVQVRLPDR 364

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRG-TPRIAGRLLRRVRDFAEVAHAKTITRE 244
           ED   I +  A+       D    ++A  + G +P     ++ +    A  +    I  +
Sbjct: 365 EDRAKIFRFYAEKLKSKSADIDYDQLARLTTGLSPATVAMVVNQAGLVARKSGDTEIASK 424

Query: 245 IADAALLRLAI 255
               A+    I
Sbjct: 425 HFMEAIKIARI 435


>gi|260578433|ref|ZP_05846347.1| ATP-dependent metalloprotease FtsH [Corynebacterium jeikeium ATCC
           43734]
 gi|258603455|gb|EEW16718.1| ATP-dependent metalloprotease FtsH [Corynebacterium jeikeium ATCC
           43734]
          Length = 796

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 61/262 (23%), Positives = 101/262 (38%), Gaps = 23/262 (8%)

Query: 25  RTLEEFTGQVEACSNLKVFIE--AAKARAEALD-----HVLFVGPPGLGKTTLAQVVARE 77
            T ++  G  EA   L    +     +R EAL       VL  GPPG GKT LA+ VA E
Sbjct: 165 TTFDDVAGADEAVEELDEIRDFLTDPSRYEALGAKIPRGVLLYGPPGTGKTLLARAVAGE 224

Query: 78  LGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
            GV F + SG       V   A  +  L    ++    ++F+DEI  +       +    
Sbjct: 225 AGVPFFTISGSDFVEMFVGVGASRVRDLFKQAKENSPCIIFVDEIDAVGRQRGAGMGGGH 284

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
           ++ +  L   +         +     L+AAT R  +L   L    RF   I +   ++  
Sbjct: 285 DEREQTL--NQLLVEMDGFGDRDGVILMAATNRPDILDPALLRPGRFDRQIPVTNPDLAG 342

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            + I+   AK   LA       ++   ++ T  ++G  L  V + A +  A+     I  
Sbjct: 343 REQILNVHAKNKPLAKD----VDLKSLAKRTAGMSGADLENVLNEAALLTARVDGNVITA 398

Query: 248 AALLRLAIDKMGFDQLDLRYLT 269
            AL       +G  +   + ++
Sbjct: 399 DALEEATDRVVGGPRRSSKIIS 420


>gi|291288693|ref|YP_003505509.1| ATP-dependent protease La [Denitrovibrio acetiphilus DSM 12809]
 gi|290885853|gb|ADD69553.1| ATP-dependent protease La [Denitrovibrio acetiphilus DSM 12809]
          Length = 768

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 58/276 (21%), Positives = 101/276 (36%), Gaps = 47/276 (17%)

Query: 32  GQVEACSNLKVFIEAAKARAEAL--DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPV 89
           G  +    +  F+ A K  AE +    + F GPPG+GKT+LA+ +A  +   F   S   
Sbjct: 322 GLEKPKERILEFL-AVKKIAENIKGPIICFTGPPGVGKTSLAKSIAEAMNRKFVRMSLGG 380

Query: 90  IAKAGDLA------------ALLTNLED----RDVLFIDEIHRL--------SIIVEEIL 125
           +    ++              +L +L+       V  +DEI +L        S  + E+L
Sbjct: 381 MRDEAEIRGHRKTYIGSMPGKILQSLKKAGSSNPVFLLDEIDKLGADFRGDPSSALLEVL 440

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
            P   +  +D  +        ++ +LS+   I     V  +  PL DR  +     + E 
Sbjct: 441 DPEQNNTFMDHYLE-------LEYDLSKVFFITTANNVHNIPQPLLDRMEVIHVSGYTER 493

Query: 186 EDLKTIVQRGAKLTGLAV--TDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           E L+      AK+  +     +    E    +         +L  +R + + A  + + R
Sbjct: 494 EKLE-----IAKMFLVPKMIKEHNVQERVNIAD------TAILDIIRGYTKEAGVRNLER 542

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGP 279
           EIA      +       DQ  +R        F G P
Sbjct: 543 EIASVVRKCVKKLVQKPDQKSVRVNKATIEKFLGIP 578


>gi|194400003|gb|ACF60960.1| neuronal spastin [Gallus gallus]
          Length = 613

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 83/224 (37%), Gaps = 22/224 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDHV-------LFVGPPGLGKTTLAQVVAREL 78
             ++  GQ  A   L+  +     R E    +       L  GPPG GKT LA+ VA E 
Sbjct: 337 KFDDIAGQELAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES 396

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAME 130
              F + S   +           + AL     +    ++FIDE+  L     E  + A  
Sbjct: 397 NATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLCERREGEHDASR 456

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
             + + ++       S +    R  ++ AT R   L + +  RF   + ++    E    
Sbjct: 457 RLKTEFLIEFDGVQSSGE---DRILVMGATNRPQELDDAVLRRFTKRVYVSLPNEETRLI 513

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR-VRDFA 233
           +++    L     +     E+A  +R T   +G  L   V+D A
Sbjct: 514 LLK---NLLSKQGSPLTQKELAQLARMTDGYSGSDLTASVKDAA 554


>gi|160894379|ref|ZP_02075156.1| hypothetical protein CLOL250_01932 [Clostridium sp. L2-50]
 gi|156864080|gb|EDO57511.1| hypothetical protein CLOL250_01932 [Clostridium sp. L2-50]
          Length = 605

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 48/197 (24%), Positives = 79/197 (40%), Gaps = 22/197 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78
              +  G+ EA  NL   ++     A+  D        VL VGPPG GKT LA+ VA E 
Sbjct: 163 RFSDVAGEDEAKENLAEIVDYLHNPAKYTDVGALMPKGVLLVGPPGTGKTMLAKAVAGES 222

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG           A  +  L    +++   ++FIDEI  +    +  +    E
Sbjct: 223 NVPFFSMSGSEFVEMFVGMGASKVRDLFKQAKEKAPCIVFIDEIDAIGKKRDGQIGGNDE 282

Query: 131 -DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            +  L+ ++ E               ++AAT R   L   L    RF   + +   +++ 
Sbjct: 283 REQTLNQLLTEMDGFEGNNG----VIILAATNRPESLDPALTRPGRFDRRVPVELPDLKG 338

Query: 188 LKTIVQRGAKLTGLAVT 204
            + I+Q  A+   ++  
Sbjct: 339 REAILQVHARKIKVSDD 355


>gi|156089603|ref|XP_001612208.1| ATPase, AAA family protein [Babesia bovis]
 gi|154799462|gb|EDO08640.1| ATPase, AAA family protein [Babesia bovis]
          Length = 893

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 43/181 (23%), Positives = 66/181 (36%), Gaps = 15/181 (8%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLT 101
           K + +A   VL  GPPG  KT +A+ VA E  +NF S  GP I           +  +  
Sbjct: 586 KLQIQAPRGVLLYGPPGCSKTLMAKAVATESHMNFISVKGPEIFNMYVGESERAIRKVFK 645

Query: 102 NLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA 159
                   V+F DE+  +S+  E     A        +V +  +       L +  +I A
Sbjct: 646 TARTNAPCVIFFDEMDSISVSREH----ADSTGVTRRVVSQLLNEMDGISELKQVIVIGA 701

Query: 160 TTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLA-VTDEAACEIAMRSR 216
           T R  L+ + L    R    + +   ++E  K I     K        +  A E    S 
Sbjct: 702 TNRPDLMDSALLRPGRLDRLVYIPLPDLEARKKIFSIYLKRLPTDGFGEMNAAETLAHST 761

Query: 217 G 217
            
Sbjct: 762 N 762



 Score = 42.8 bits (99), Expect = 0.067,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 70/222 (31%), Gaps = 41/222 (18%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGV-------------------NFRSTSGP 88
           K        VL  GPPG GKT++A+ +   +                      F    GP
Sbjct: 279 KLGIAPPRGVLLYGPPGCGKTSIAKAMKNNMKQLSGFKDDHEVHVMLIQSSDLFNHEYGP 338

Query: 89  VIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEI---------LYPAMEDFQLDLM 137
             +    +      +  R   + FIDEI  L                    M+ F+L   
Sbjct: 339 TASNIAIIFEQCAKIAKRCPCICFIDEIEILCKKRSGYNTGNGILAAFLNYMDGFKLPSN 398

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRG 195
             E             F +I  T  +  +   L+   RF + + +     +D  +I++  
Sbjct: 399 SEENDHG---------FVIIGCTNTIDSIDQALRRPGRFDLEVEVGVPNADDRYSILRTL 449

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
              T   ++D+   +I+ R  G      + L     +A +  
Sbjct: 450 LGETKHNISDKQLRDISDRCSGFVGADLKQLVTSAAWARIDK 491


>gi|167039758|ref|YP_001662743.1| hypothetical protein Teth514_1109 [Thermoanaerobacter sp. X514]
 gi|300914996|ref|ZP_07132311.1| protein of unknown function DUF815 [Thermoanaerobacter sp. X561]
 gi|307724917|ref|YP_003904668.1| hypothetical protein Thet_1804 [Thermoanaerobacter sp. X513]
 gi|166853998|gb|ABY92407.1| protein of unknown function DUF815 [Thermoanaerobacter sp. X514]
 gi|300888720|gb|EFK83867.1| protein of unknown function DUF815 [Thermoanaerobacter sp. X561]
 gi|307581978|gb|ADN55377.1| protein of unknown function DUF815 [Thermoanaerobacter sp. X513]
          Length = 435

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 42/219 (19%), Positives = 82/219 (37%), Gaps = 12/219 (5%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKA--RAEALDHVLFVGP 62
              ++ N S +   I  + P T E+  G        K+ IE AKA  +    ++VL  G 
Sbjct: 191 FRWVTENGSGQLKGIENVDPITFEDLIGYE---EEHKIVIENAKALLKGFPPNNVLLYGD 247

Query: 63  PGLGKTTLAQVVAREL---GVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSI 119
            G GK++  + +  E    G+     +   I     +  ++ +   + +LF D++     
Sbjct: 248 KGTGKSSTVKALLNEFYKEGLRLIEINKNDIKDLSYILDIIKDRGMKFILFFDDLSFDES 307

Query: 120 IVEEILYPAMEDFQLDL----MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
             +     ++ +  +++    +V    S R   +  +        T        L DRFG
Sbjct: 308 EADYKELKSVLEGGVEILPSNVVIYATSNRRHIVTENIEDNELHNTDAREEKLSLSDRFG 367

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMR 214
           I I       E+   IV+  A+   + +      E A++
Sbjct: 368 ITITFVTPSQEEYLKIVKGLAQKHNIEIEWNLLKEKALQ 406


>gi|311743363|ref|ZP_07717170.1| ATP-dependent metalloprotease FtsH [Aeromicrobium marinum DSM
           15272]
 gi|311313431|gb|EFQ83341.1| ATP-dependent metalloprotease FtsH [Aeromicrobium marinum DSM
           15272]
          Length = 687

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 67/249 (26%), Positives = 100/249 (40%), Gaps = 31/249 (12%)

Query: 25  RTLEEFTGQVEACSNL----KVFIEAAKARA---EALDHVLFVGPPGLGKTTLAQVVARE 77
            T  +  G  EA   L    +   E AK +A   +    VL  GPPG GKT LA+ VA E
Sbjct: 185 TTFSDVAGCDEAIEELGEIKEFLAEPAKFQAVGAKIPKGVLLYGPPGTGKTLLARAVAGE 244

Query: 78  LGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM 129
            GV F S SG       V   A  +  L    +     ++FIDEI  +       +    
Sbjct: 245 AGVPFYSISGSDFVEMFVGVGASRVRDLFEQAKANAPAIVFIDEIDAVGRHRGTGMGGGH 304

Query: 130 EDFQLD----LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183
           ++ +      L+  +G   R   I       IAAT R  +L   L    RF   I +   
Sbjct: 305 DEREQTLNQLLVEMDGFDVRGGVIL------IAATNRPDVLDPALLRPGRFDRQIGVEAP 358

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           +++  +TI++  A+   +     A   +   +R TP  +G  L  V + A +  A+   +
Sbjct: 359 DLKGRETILKVHARGKPI----GAGVNLGSVARRTPGFSGADLANVLNEAALLTARNGVK 414

Query: 244 EIADAALLR 252
            I D AL  
Sbjct: 415 TITDEALDE 423


>gi|282165485|ref|YP_003357870.1| cell division control protein 48 [Methanocella paludicola SANAE]
 gi|282157799|dbj|BAI62887.1| cell division control protein 48 [Methanocella paludicola SANAE]
          Length = 765

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 38/117 (32%), Positives = 49/117 (41%), Gaps = 17/117 (14%)

Query: 24  PR-TLEEFTGQVEACSNLKVFIEA--------AKARAEALDHVLFVGPPGLGKTTLAQVV 74
           PR T E+  G       ++  IE          K   +    VL  GPPG GKT +A+ V
Sbjct: 176 PRLTYEDIGGLKREIGLVREMIELPLRHPELFQKLGIDPPKGVLLYGPPGTGKTMIAKAV 235

Query: 75  ARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEE 123
           A E   NF S SGP I           L  +    ED    ++FIDEI  ++   EE
Sbjct: 236 ASETDANFISISGPEIMSKYYGESEKQLRDIFKEAEDNAPSIIFIDEIDSIAPRREE 292



 Score = 47.8 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 73/193 (37%), Gaps = 27/193 (13%)

Query: 2   MDREGLLSRNVSQEDADISLLR------PR-TLEEFTGQVEACSNLKVFIEAAKARAEAL 54
           M +  ++    + ++ + S +R      P     +  G  +    L+  +E      +  
Sbjct: 420 MLQIKMVDFEDALKNIEPSAMREVFVEVPNVHWSDIGGLEKVKQELRETVEWPLKYKDVF 479

Query: 55  D--------HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLE 104
           D         +L  GPPG GKT LA+ VA E   NF S  GP V++K  G+    +    
Sbjct: 480 DITHTVAPKGILVFGPPGTGKTLLAKAVANESEANFISIKGPEVLSKWVGESEKAIRETF 539

Query: 105 DR------DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIA 158
            R       ++F DEI  ++          + +  +  ++ E          L    ++A
Sbjct: 540 RRARQSAPTIIFFDEIDAIAPTRGMSSDSHVTERVVSQLLTELDGLE----ELHSVVVLA 595

Query: 159 ATTRVGLLTNPLQ 171
           AT R  ++   L 
Sbjct: 596 ATNRPDMVDTALL 608


>gi|38606517|emb|CAE05991.3| OSJNBa0016O02.1 [Oryza sativa Japonica Group]
          Length = 584

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 66/294 (22%), Positives = 106/294 (36%), Gaps = 42/294 (14%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRT----LEEFTGQVEACSNL----KVFIEAA----- 47
           MM     + R +S         RPR      ++  G  EA   L    ++ IE       
Sbjct: 262 MM---WFIQRQMSAGGGAEKRRRPRKQRVGFDDVQGVDEAKEELVEISRLIIEVVSCLHG 318

Query: 48  ----KARAEALD-HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDL 96
               K     L   VL VGPPG GKT LA+ VA E G+ F S S            A  +
Sbjct: 319 SLNYKKLGAKLPRGVLLVGPPGTGKTLLARAVAGEAGIPFFSVSASEFVEVFVGRGAARV 378

Query: 97  AALLTNLED--RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRF 154
             L    ++    ++FIDE+  +        +    D  L+ ++ E     S      + 
Sbjct: 379 RDLFKEAKEAAPSIIFIDELDAVGGSR-GRSFNDERDQTLNQLLTEMDGFDSDM----KV 433

Query: 155 TLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIA 212
            ++AAT R   L   L    RF   + +   ++E  + I+     L  + + ++      
Sbjct: 434 IVMAATNRPKALDPALCRPGRFSRKVLVGVPDLEGRRNIL--AVHLRDVPLEEDPEIICD 491

Query: 213 MRSRGTPRIAGRLLRRVRD----FAEVAHAKTITREIADAALLRLAIDKMGFDQ 262
           + +  TP + G  L  + +     A      T+ RE    A+ R      G  +
Sbjct: 492 LVASLTPGLVGADLANIVNEAALLAARRGGNTVAREDIMDAIEREKYGVNGRQE 545


>gi|17546245|ref|NP_519647.1| ATP-dependent zinc metallopeptidase [Ralstonia solanacearum
           GMI1000]
 gi|17428542|emb|CAD15228.1| probable atp-dependent zinc metallopeptidase (cell division ftsh)
           transmembrane protein [Ralstonia solanacearum GMI1000]
          Length = 628

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 85/220 (38%), Gaps = 16/220 (7%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLT 101
           K        VL VGPPG GKT LA+ +A E  V F S SG       V   A  +  +  
Sbjct: 181 KLGGRIPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEMFVGVGAARVRDMFE 240

Query: 102 NLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDL--MVGEGPSARSVKINLSRFTLI 157
           N + +   ++FIDEI  +       +    ++ +  L  M+ E     +     S   +I
Sbjct: 241 NAKKQAPCIVFIDEIDAVGRHRGAGMGGGNDEREQTLNQMLVEMDGFEAN----SGVIVI 296

Query: 158 AATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRS 215
           AAT R  +L   L    RF   + +   +I   + I++   +   +    +A+       
Sbjct: 297 AATNRADVLDKALLRPGRFDRQVYVGLPDIRGREQILKVHMRKVPIGNDVDASVLARGTP 356

Query: 216 RGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255
             +      L+     FA   + + +  +  + A  ++ +
Sbjct: 357 GFSGADLANLVNEAALFAARRNKRVVDMQDFEDAKDKIYM 396


>gi|134298005|ref|YP_001111501.1| ATP-dependent metalloprotease FtsH [Desulfotomaculum reducens MI-1]
 gi|134050705|gb|ABO48676.1| membrane protease FtsH catalytic subunit [Desulfotomaculum reducens
           MI-1]
          Length = 615

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 57/250 (22%), Positives = 93/250 (37%), Gaps = 31/250 (12%)

Query: 26  TLEEFTGQVEACSNLKV---FIEAAKARAEA----LDHVLFVGPPGLGKTTLAQVVAREL 78
           T E+  G  E    L     F+++ K   E        VL  GPPG GKT LA+ VA E 
Sbjct: 163 TFEDVAGADEVKEELAEIVDFLKSPKKFNEIGAKIPKGVLLFGPPGTGKTLLARAVAGEA 222

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG       V   A  +  L    +     ++FIDEI  +       L    +
Sbjct: 223 GVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIVFIDEIDAVGRQRGAGLGGGHD 282

Query: 131 DFQLDL------MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNF 182
           + +  L      M G  P+   +        ++AAT R  +L   L    RF   + ++ 
Sbjct: 283 EREQTLNQLLVEMDGFNPNEGII--------IVAATNRPDILDPALLRPGRFDRQVVVDS 334

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            +++  + I++  +K   L    +           T      L+      +  +  KT+ 
Sbjct: 335 PDVKGREEILKVHSKGKPLEENVDLEVLARRTPGFTGADLANLMNEAALLSARSGKKTVG 394

Query: 243 REIADAALLR 252
               + ++ R
Sbjct: 395 MNELEDSIER 404


>gi|296419362|ref|XP_002839281.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295635401|emb|CAZ83472.1| unnamed protein product [Tuber melanosporum]
          Length = 651

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 76/215 (35%), Gaps = 26/215 (12%)

Query: 15  EDADISLLR------PR-TLEEFTGQVEACSNLKVFIEAAKARAEALD--------HVLF 59
           +D   + +R      P+    +  GQ E    L+  +E   A  E            +L 
Sbjct: 364 KDVRPTAMREIFLEPPKVRWSDIGGQEEVKQRLREAVEWPLAHPETFSRLGGTPRKGLLL 423

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLE--DRDVLFI 111
            GPPG  KT  A+ +A E G+NF +  GP +           +  +          ++F 
Sbjct: 424 YGPPGCSKTLTAKALATEAGLNFIAVKGPELFNMYLGESERAVREVFRKARAASPSIIFF 483

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DEI  LS   +          + +++     +       L   T++AAT R  ++   L 
Sbjct: 484 DEIDALSASRDGGGGGGGGGGKTNVLTTL-LNEMDGIEVLKGVTILAATNRPEIIDPALL 542

Query: 172 D--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVT 204
              R    + +   ++   + I+Q       ++  
Sbjct: 543 RPGRLDTILYVGPPDLPAREQILQIKTGKMSISTD 577



 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 79/211 (37%), Gaps = 15/211 (7%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK-----AGDLAALLTNLEDRD--VL 109
           +L  GPPG GKT L + +A E+       +G VI K        +  +          V+
Sbjct: 136 ILLYGPPGTGKTLLLKAIASEISAKCYVLNGSVIGKYLGESEAAIRKVFAEARKNQPAVV 195

Query: 110 FIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSAR---SVKINLSRFTLIAATTRVGLL 166
           F+DE   ++    E      E   +  ++ E        S  + + +  ++A T+R  ++
Sbjct: 196 FMDEADSIACKRGEG--DGNEGRIVSTILTEIDGMSCGDSDGVEVVKLVVVATTSRPNVI 253

Query: 167 TNPLQD--RFGIPIRLNFYEIEDLKTIVQR-GAKLTGLAVTDEAACEIAMRSRGTPRIAG 223
              L+   RF   I +   + +  + I++    K+       + A   A+ ++    +  
Sbjct: 254 DQALRRPGRFDREIEIGIPDADSRREILEILTRKIDFSNEQPKEAIIKALAAKTHGFVGA 313

Query: 224 RLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            L   VR     A  +    ++  +AL    
Sbjct: 314 DLEELVRTAFTSALTRLERDDLDPSALTLSD 344


>gi|167587472|ref|ZP_02379860.1| ATP-dependent metalloprotease FtsH [Burkholderia ubonensis Bu]
          Length = 631

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 90/249 (36%), Gaps = 23/249 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAA-------KARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G  EA   +   ++         K        VL VGPPG GKT LA+ +A E 
Sbjct: 152 NFSDVAGCDEAKEEVSELVDFLRDPQKFQKLGGRIPRGVLLVGPPGTGKTLLARAIAGEA 211

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  +    +     ++FIDEI  +       +    +
Sbjct: 212 KVPFFSISGSDFVEMFVGVGAARVRDMFEQAKKHAPCIVFIDEIDAVGRHRGAGMGGGND 271

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  M+ E     +     S   +IAAT R  +L   L    RF   + +   +I 
Sbjct: 272 EREQTLNQMLVEMDGFEAN----SGVIVIAATNRSDVLDKALLRPGRFDRQVYVGLPDIR 327

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++   +   +A   +AA         +      L+     FA     + +  +  
Sbjct: 328 GREQIMRVHLRKVPIANDVDAAVIARGTPGFSGADLANLVNEAALFAARRGKRIVEMQDF 387

Query: 247 DAALLRLAI 255
           + A  ++ +
Sbjct: 388 EDAKDKIFM 396


>gi|25029098|ref|NP_739152.1| putative cell division protein FtsH [Corynebacterium efficiens
           YS-314]
 gi|23494385|dbj|BAC19352.1| putative cell division protein FtsH [Corynebacterium efficiens
           YS-314]
          Length = 812

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 57/244 (23%), Positives = 87/244 (35%), Gaps = 19/244 (7%)

Query: 26  TLEEFTGQVEACSNL---KVFIEAAKARAE----ALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  EA   L   K F+E      +        VL  GPPG GKT LA+ VA E 
Sbjct: 165 TFADVAGADEAVDELHEIKDFLEDPTRYQDLGAKIPRGVLLYGPPGTGKTLLARAVAGEA 224

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG       V   A  +  L    ++    ++FIDEI  +       +    +
Sbjct: 225 GVPFFSISGSDFVEMFVGVGASRVRDLFKQAKENSPCIIFIDEIDAVGRARGSGMGGGHD 284

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
           + +  L   +         +     L+AAT R  +L   L    RF   I +   +++  
Sbjct: 285 EREQTL--NQLLVEMDGFGDRGSVILMAATNRPDVLDPALLRPGRFDRQIPVTAPDLKGR 342

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           + I++  AK    A            +  +    G +L              IT +  + 
Sbjct: 343 EQILEIHAKGKPFAPDANLKALAKRTAGMSGADLGNVLNEAALLTARIGGNAITADALEE 402

Query: 249 ALLR 252
           A  R
Sbjct: 403 ATDR 406


>gi|306821443|ref|ZP_07455047.1| DNA polymerase III, gamma/tau subunit DnaX [Eubacterium yurii
           subsp. margaretiae ATCC 43715]
 gi|304550518|gb|EFM38505.1| DNA polymerase III, gamma/tau subunit DnaX [Eubacterium yurii
           subsp. margaretiae ATCC 43715]
          Length = 538

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 52/247 (21%), Positives = 78/247 (31%), Gaps = 52/247 (21%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     RP   E   GQ +    LK  I+      + + H  +F G  G GKT+ A+V A
Sbjct: 4   ALYRKYRPDNFENIIGQSQVTDVLKNQIK-----EDKISHAYVFSGTRGTGKTSTAKVFA 58

Query: 76  RELGVNFRST---------------------SGPVIAKAGDLAALLTNL------EDRDV 108
           + L     S                               ++ AL  N+          V
Sbjct: 59  KSLNCQNYSPESGPCNHCESCKNDYVDTIEIDAASNNSVDNIRALKDNIIYRPSFGRYKV 118

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
             IDE+H LSI     L   +E+                         I ATT +  +  
Sbjct: 119 YIIDEVHMLSIGAFNALLKTLEE------------------PPEHVIFILATTEINKIPA 160

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            +  R           IED+K+ ++   +   +    +A   IA  S G  R A   L +
Sbjct: 161 TILSRCQ-KFEFKKVSIEDIKSRLKFIVENENIPYDVDAIDYIATMSDGGLRDAISTLDQ 219

Query: 229 VRDFAEV 235
           V     +
Sbjct: 220 VASLGRI 226


>gi|296005359|ref|XP_001349843.2| 26S proteasome regulatory subunit 7, putative [Plasmodium
           falciparum 3D7]
 gi|225631944|emb|CAD52250.2| 26S proteasome regulatory subunit 7, putative [Plasmodium
           falciparum 3D7]
          Length = 420

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 82/248 (33%), Gaps = 20/248 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
           T  +  G  E    L+  +E    + E            VL  GPPG GKT  A+ +A  
Sbjct: 160 TYNDIGGCKEQLEKLREVVEMPLLQPERFVTLGIDPPKGVLLYGPPGTGKTLTARAIANR 219

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
               F    G  +        A  +  L    + +   +LFIDE+  +     +    A 
Sbjct: 220 TDACFICVIGSELVQKYVGEGARMVRELFQMAKSKKACILFIDEVDAIGGSRGDE--SAH 277

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            D ++   + E  +      N     ++ AT R   L + L    R    I  +  ++E 
Sbjct: 278 GDHEVQRTMLEIVNQLDGFDNRGNIKVLMATNRPDTLDSALVRPGRIDRRIEFSLPDLEG 337

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
              I +  A    ++          +    T      +      FA  A  KTIT +   
Sbjct: 338 RTHIFKIHANTMNMSRDVRFELLARLCPNSTGSDIRSVCTEAGMFAIRARRKTITEKDLL 397

Query: 248 AALLRLAI 255
            A+ ++  
Sbjct: 398 LAINKVIH 405


>gi|224372861|ref|YP_002607233.1| ATP-dependent protease La [Nautilia profundicola AmH]
 gi|223589170|gb|ACM92906.1| ATP-dependent protease La [Nautilia profundicola AmH]
          Length = 774

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 60/282 (21%), Positives = 104/282 (36%), Gaps = 51/282 (18%)

Query: 45  EAAKARAEALDHVL--FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA----- 97
           E AK R       +  FVGPPG+GKT+LA  +A+ L       +   +    +L      
Sbjct: 335 ELAKKRNNEFSGAILCFVGPPGVGKTSLANSIAKSLDRKLVRIALGGLEDVNELRGHRRT 394

Query: 98  -----------ALLTNLEDRDVLFIDEIHRLSI-------IVEEILYPAMEDFQLDLMVG 139
                       ++   E   V+ +DEI +++        ++ EIL P       DL + 
Sbjct: 395 YIGAMPGRIAQGIINAKEMNPVMVLDEIDKIARYRGDPTAVLLEILDPEQNKEFRDLYL- 453

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR----- 194
                 +  ++LS+   IA       +  PL+DR  +   +  Y  ++   I +R     
Sbjct: 454 ------NFDLDLSKVLFIATANDPSTIPAPLKDRMEMIF-VGSYTPQEKFEIAKRYLIPQ 506

Query: 195 -----GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV------RDFAEVAHAKTITR 243
                  K + ++++D+A  EI    + T     R LRRV      +   E+   K   R
Sbjct: 507 EMKKHSLKKSEVSISDKALMEIID--KYTKEAGVRNLRRVIAKIMRKAALEIIKGKEKVR 564

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETI 285
                    L     G + +D +    +       PVG + +
Sbjct: 565 ISIKNLEEFLEKGYFGIESVDKKDKIGVVNGLAWTPVGGDVL 606


>gi|17508421|ref|NP_492257.1| defective MEIosis family member (mei-1) [Caenorhabditis elegans]
 gi|462591|sp|P34808|MEI1_CAEEL RecName: Full=Meiotic spindle formation protein mei-1; AltName:
           Full=Katanin ATPase-containing subunit
 gi|409131|gb|AAA28109.1| mei-1 [Caenorhabditis elegans]
 gi|3879272|emb|CAB00052.1| C. elegans protein T01G9.5a, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 472

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 50/259 (19%), Positives = 88/259 (33%), Gaps = 24/259 (9%)

Query: 26  TLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +L++  G  +    L   +       E  +        ++  GPPG GKT +A+ +A E 
Sbjct: 191 SLDDIIGMHDVKQVLHEAVTLPLLVPEFFQGLRSPWKAMVLAGPPGTGKTLIARAIASES 250

Query: 79  GVNFRSTSGPVIAKA--GDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAME 130
              F + S   ++    GD   ++  L +        ++FIDEI  L             
Sbjct: 251 SSTFFTVSSTDLSSKWRGDSEKIVRLLFELARFYAPSIIFIDEIDTLG-GQRGNSGEHEA 309

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
             ++             K +  R  ++AAT     L   L+ RF   I +   +I+  K 
Sbjct: 310 SRRVKSEFLVQMDGSQNKFDSRRVFVLAATNIPWELDEALRRRFEKRIFIPLPDIDARKK 369

Query: 191 IVQRGA----KLTGLAVTDEAACEIAMRSRGTPRI----AGRLLRRVRDFAEVAHAKTIT 242
           ++++      K   +   D AA            +    A  +LRR    +      T  
Sbjct: 370 LIEKSMEGTPKSDEINYDDLAARTEGFSGADVVSLCRTAAINVLRRYDTKSLRGGELTAA 429

Query: 243 REIADAALLRLAIDKMGFD 261
            E   A L+R    +    
Sbjct: 430 MESLKAELVRNIDFEAALQ 448


>gi|292629593|ref|XP_002667470.1| PREDICTED: ATPase family AAA domain-containing protein 2B-like
           [Danio rerio]
          Length = 739

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 43/186 (23%), Positives = 73/186 (39%), Gaps = 26/186 (13%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTS------GPVIAK-AGDLAALL 100
           K + +     LF GPPG GKT +A+ +A E     R  S         ++K  G+    L
Sbjct: 408 KFKIQPPRGCLFYGPPGTGKTLVARALANECSQGDRKVSFFMRKGADCLSKWVGESERQL 467

Query: 101 TNLEDR------DVLFIDEIHRLSII---VEEILYPAMEDFQLDLMVGEGPSARSVKINL 151
             L D+       ++F DEI  L+ +    ++ ++ ++    L LM G       V I  
Sbjct: 468 RLLFDQAYLMRPSIIFFDEIDGLAPVRSSRQDQIHSSIVSTLLALMDGLDSRGEIVVI-- 525

Query: 152 SRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAAC 209
                  AT R+  +   L+   RF      N  + +  K I++   +     + +    
Sbjct: 526 ------GATNRLDSIDPALRRPGRFDREFLFNLPDKKARKHILEIHTRDWSPKLAEPFID 579

Query: 210 EIAMRS 215
           E+A R 
Sbjct: 580 ELAERC 585


>gi|291401851|ref|XP_002717306.1| PREDICTED: Cell Division Cycle related family member
           (cdc-48.2)-like [Oryctolagus cuniculus]
          Length = 891

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 82/243 (33%), Gaps = 34/243 (13%)

Query: 29  EFTGQVEACSNLKVFIEAAKA-----------RAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +  G     S LK   E  +               A   VL  GPPG GKT +A+ +  E
Sbjct: 351 DMIG--GLNSQLKAIREMIELPLKQPQLFKTYGIPAPRGVLLYGPPGTGKTMIARAIGNE 408

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIV---EEILY 126
           +G      +GP I           L  +      R   ++FIDE+  L       +  + 
Sbjct: 409 VGAYVSVINGPEIISKFYGETEAKLRQIFAEATQRQPAIIFIDELDALCPKREGAQNEVE 468

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
             +    L LM G G      ++ +     + AT R   L   L+   RF   + +    
Sbjct: 469 KRVVASLLTLMDGIGSEGSEGQVLV-----LGATNRPQALDAALRRPGRFDKEVEIGVPN 523

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            +D   I+Q   KL           E+   +       G  L+ + + A +   + +  +
Sbjct: 524 AQDRLDILQ---KLLRRIPHLLTKAELLQVANSAHGYVGADLKALCNEAGLRAFRRVFDK 580

Query: 245 IAD 247
             +
Sbjct: 581 HPN 583



 Score = 52.0 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 59/161 (36%), Gaps = 19/161 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
           +  +  G       LK  +E      E            VL  GPPG  KT +A+ +A E
Sbjct: 623 SWSDIGGLENVKLKLKQAVEWPLKHPESFNRMGIQPPKGVLLYGPPGCSKTMIAKALANE 682

Query: 78  LGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAM 129
            G+NF +  GP +     G+    +  +  +       ++F DE+  L++          
Sbjct: 683 SGLNFLAIKGPELMNKYVGESERAVREIFRKARAVAPSIIFFDELDALAVERGSSSGAGN 742

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
                D ++ +  +       L   T++AAT R   +   L
Sbjct: 743 ---VADRVLAQLLTEMDGVQQLKDVTILAATNRPDRIDKAL 780


>gi|226309710|ref|YP_002769604.1| cell division protein FtsH homolog [Brevibacillus brevis NBRC
           100599]
 gi|226092658|dbj|BAH41100.1| cell division protein FtsH homolog [Brevibacillus brevis NBRC
           100599]
          Length = 648

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 63/250 (25%), Positives = 94/250 (37%), Gaps = 31/250 (12%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAK-------ARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  E  + L+  ++  K         A     VL VGPPG GKT LA+ VA E 
Sbjct: 167 TFDDVAGADEEKAELEEVVDFLKDNRKFNAVGARIPKGVLLVGPPGTGKTLLARAVAGEA 226

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG       V   A  +  L  N +     ++FIDEI  +       L    +
Sbjct: 227 GVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCIIFIDEIDAVGRQRGAGLGGGHD 286

Query: 131 DFQLDL------MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNF 182
           + +  L      M G G +   + I        AAT R  +L   L    RF   I ++ 
Sbjct: 287 EREQTLNQLLVEMDGFGGNEGIIMI--------AATNRPDILDPALLRPGRFDRQITVDR 338

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            +I+  + +++  A+   +    +        S  T      LL          + K IT
Sbjct: 339 PDIKGREAVLKVHARNKPIGEDVKLEVIARGTSGFTGADLENLLNEAALLTARRNKKQIT 398

Query: 243 REIADAALLR 252
               D A+ R
Sbjct: 399 MTEVDEAIDR 408


>gi|170093437|ref|XP_001877940.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164647799|gb|EDR12043.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 1027

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 76/195 (38%), Gaps = 33/195 (16%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  E  S +  F+   K R      ++  VGPPG+GKT++ + ++R LG  F   S
Sbjct: 488 EDHYGLSEVKSRILEFLAVGKLRGTVQGKIICLVGPPGVGKTSIGKSISRALGRQFFRFS 547

Query: 87  GPVIAKAGDLA------------ALLTNLE----DRDVLFIDEIHRLSIIVE-------- 122
              +    ++              ++  L+    +  ++ IDE+ ++   +         
Sbjct: 548 VGGLTDVAEIKGHRRTYVGALPGKIIQALKRVETENPLVLIDEVDKIGRGINGDPASALL 607

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V ++LSR   +     +  +  PL DR  + + ++ 
Sbjct: 608 EMLDPEQNSGFLD-------HYMDVPVDLSRVLFVCTANNLDTIPAPLLDRMEV-LEVSG 659

Query: 183 YEIEDLKTIVQRGAK 197
           Y  E+   I  R   
Sbjct: 660 YVSEEKAVIASRYLG 674


>gi|152996553|ref|YP_001341388.1| DNA polymerase III subunits gamma and tau [Marinomonas sp. MWYL1]
 gi|150837477|gb|ABR71453.1| DNA polymerase III, subunits gamma and tau [Marinomonas sp. MWYL1]
          Length = 752

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 56/260 (21%), Positives = 82/260 (31%), Gaps = 60/260 (23%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+T  E  GQ      L+  + A   R + L H  LF G  G+GKTT+A++ A+ L   
Sbjct: 11  RPQTFLEMAGQDHV---LQALVNA--LRQQRLHHAYLFTGTRGVGKTTIARIFAKCLNCE 65

Query: 82  FRSTS-------------------------GPVIAKAGDLAALLTNLE------DRDVLF 110
               S                              K  D   LL N++         V  
Sbjct: 66  TNGISPEPCGTCDSCREIAEGRFVDLIEVDAASRTKVEDTRELLENVQYAPTRGRFKVYL 125

Query: 111 IDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           IDE+H LS      L   +E+                    +    + ATT    L   +
Sbjct: 126 IDEVHMLSTHSFNALLKTLEE------------------PPAHVKFLLATTDPQKLPVTI 167

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
             R  +   L     + +   +Q       +     A  +I   + G+ R A  L     
Sbjct: 168 LSRC-LQFNLKNMSPQRVVDYLQTVLTTEEVNFDQPALWQIGQAANGSMRDALSL----T 222

Query: 231 DFAEVAHAKTITREIADAAL 250
           D A      TI+     A L
Sbjct: 223 DQAIAFGNGTISESGVTAML 242


>gi|58699909|ref|ZP_00374504.1| DNA polymerase III, subunits gamma and tau, programmed [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|58533574|gb|EAL57978.1| DNA polymerase III, subunits gamma and tau, programmed [Wolbachia
           endosymbiont of Drosophila ananassae]
          Length = 396

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 82/227 (36%), Gaps = 25/227 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP + ++  GQ          +E A    +    +L  G  G+GKTT A+++A  L  + 
Sbjct: 8   RPSSFKDLVGQYILV----RVLENAFILNKIPQSILLSGSSGVGKTTTARIIALCLNCS- 62

Query: 83  RSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEIL-----YPAMEDFQLD 135
               GP+    G     L   N    DV+ ID     SI   +++     Y  +      
Sbjct: 63  ---LGPIFEPCGSCENCLAIKNSSHPDVIEIDAASHTSIDDIKVILGDICYSPISSKFKV 119

Query: 136 LMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
            ++ E             ++++   S    I ATT +  +   +  R      L+   + 
Sbjct: 120 YIIDEVHMLSSSAFNALLKTLEEPPSSVKFILATTEIKKIPITIIARCQ-RFDLHNIPVA 178

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
            +   +   A+    ++   A   IA  S  + R A  L+ +   ++
Sbjct: 179 KIVERLNDVAQKESYSIEKGALELIARHSGNSMRNALFLMNQAVLYS 225


>gi|332706533|ref|ZP_08426594.1| membrane protease FtsH catalytic subunit [Lyngbya majuscula 3L]
 gi|332354417|gb|EGJ33896.1| membrane protease FtsH catalytic subunit [Lyngbya majuscula 3L]
          Length = 660

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 61/278 (21%), Positives = 99/278 (35%), Gaps = 24/278 (8%)

Query: 27  LEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVARELG 79
            ++  G  EA   L+  +   K         A     VL VGPPG GKT LA+ +A E G
Sbjct: 206 FDDVAGIQEAKQELQEVVTFLKQPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAG 265

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMED 131
           V F S SG           A  +  L    ++    ++FIDEI  +       +    ++
Sbjct: 266 VPFFSISGSEFVEMFVGVGASRVRDLFRKAKENAPCLVFIDEIDAVGRQRGAGIGGGNDE 325

Query: 132 FQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            +  L  ++ E               +IAAT R  +L   L    RF   + +++ + + 
Sbjct: 326 REQTLNQLLTEMDGFEGNTG----IIIIAATNRPDVLDAALLRPGRFDRQVIVDYPDYKG 381

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
              I++  A+   +                T      LL              IT    +
Sbjct: 382 RNNILEVHARNKKIDPEVCLETVAKRTPGFTGADLANLLNEAAILTARRRKDAITMLEIN 441

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETI 285
            A+ R+     G   +D +   +IA +  G  V I T+
Sbjct: 442 DAIDRVVAGMEGTPLVDSKNKRLIAYHEVGHAV-ISTL 478


>gi|167836219|ref|ZP_02463102.1| ATP-dependent metalloprotease FtsH [Burkholderia thailandensis
           MSMB43]
          Length = 628

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 90/249 (36%), Gaps = 23/249 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAA-------KARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G  EA   +   ++         K        VL VGPPG GKT LA+ +A E 
Sbjct: 152 NFSDVAGCDEAKEEVSELVDFLRDPQKFQKLGGRIPRGVLLVGPPGTGKTLLARAIAGEA 211

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  +    +     ++FIDEI  +       +    +
Sbjct: 212 KVPFFSISGSDFVEMFVGVGAARVRDMFEQAKKHAPCIVFIDEIDAVGRHRGAGMGGGND 271

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  M+ E     +     S   +IAAT R  +L   L    RF   + +   +I 
Sbjct: 272 EREQTLNQMLVEMDGFEAN----SGVIVIAATNRSDVLDKALLRPGRFDRQVYVGLPDIR 327

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++   +   +A   +AA         +      L+     FA     + +  +  
Sbjct: 328 GREQIMRVHLRKVPIANDVDAAVIARGTPGFSGADLANLVNEAALFAARRGKRIVEMQDF 387

Query: 247 DAALLRLAI 255
           + A  ++ +
Sbjct: 388 EDAKDKIFM 396


>gi|186475644|ref|YP_001857114.1| ATP-dependent metalloprotease FtsH [Burkholderia phymatum STM815]
 gi|184192103|gb|ACC70068.1| ATP-dependent metalloprotease FtsH [Burkholderia phymatum STM815]
          Length = 629

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 90/249 (36%), Gaps = 23/249 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAA-------KARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G  EA   +   ++         K        VL VGPPG GKT LA+ +A E 
Sbjct: 152 NFSDVAGCDEAKEEVSELVDFLRDPQKFQKLGGRIPRGVLLVGPPGTGKTLLARAIAGEA 211

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  +    +     ++FIDEI  +       +    +
Sbjct: 212 KVPFFSISGSDFVEMFVGVGAARVRDMFEQAKKHAPCIVFIDEIDAVGRHRGAGMGGGND 271

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  M+ E     +     S   +IAAT R  +L   L    RF   + +   +I 
Sbjct: 272 EREQTLNQMLVEMDGFEAN----SGVIVIAATNRSDVLDKALLRPGRFDRQVYVGLPDIR 327

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++   +   +A   +AA         +      L+     FA     + +  +  
Sbjct: 328 GREHIMKVHLRKVPIANDVDAAVIARGTPGFSGADLANLVNEAALFAARRGKRIVEMQDF 387

Query: 247 DAALLRLAI 255
           + A  ++ +
Sbjct: 388 EDAKDKIFM 396


>gi|16124820|ref|NP_419384.1| MoxR protein [Caulobacter crescentus CB15]
 gi|221233538|ref|YP_002515974.1| MoxR-like ATPase [Caulobacter crescentus NA1000]
 gi|13421760|gb|AAK22552.1| MoxR protein [Caulobacter crescentus CB15]
 gi|220962710|gb|ACL94066.1| MoxR-like ATPase [Caulobacter crescentus NA1000]
          Length = 323

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 59/238 (24%), Positives = 88/238 (36%), Gaps = 40/238 (16%)

Query: 30  FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPV 89
             GQ EA + L V + A         HVL  GPPG  KT LAQ  AR + +++       
Sbjct: 26  VVGQDEAVNLLLVALFAG-------GHVLLEGPPGTAKTLLAQSFARSVALDYGRIQFTP 78

Query: 90  IAKAGD-LAALLTNLEDRD-----------VLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
               GD + A L N +              +L  DEI+R     +  L  AM++ Q+ + 
Sbjct: 79  DLTPGDVIGANLFNFQTSTFTLTRGPVFCELLLADEINRTPPKTQAALLEAMQERQVTID 138

Query: 138 VGEGPSARSVKINLSRFTLIAATTRV-----GLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
                          RFT++A    +       L     DRF     LN+  IE  + IV
Sbjct: 139 G-------VSHPLSPRFTVVATQNPIEQQGTYPLPEAQLDRFLFKHVLNYPSIEQERAIV 191

Query: 193 ----QRGAKLTGL-----AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
               QR  ++         V D AA + A+ +    R+   ++  + D        T 
Sbjct: 192 VGHGQRTGQMDPAAFGVEPVLDRAAIDAAVATVAQARLTDEVVGYIVDLVRATRDSTD 249


>gi|53718995|ref|YP_107981.1| FtsH endopeptidase [Burkholderia pseudomallei K96243]
 gi|53725545|ref|YP_102540.1| cell division protein FtsH [Burkholderia mallei ATCC 23344]
 gi|76811845|ref|YP_333019.1| cell division protein FtsH [Burkholderia pseudomallei 1710b]
 gi|121598236|ref|YP_992623.1| cell division protein FtsH [Burkholderia mallei SAVP1]
 gi|124386453|ref|YP_001026575.1| cell division protein FtsH [Burkholderia mallei NCTC 10229]
 gi|126439432|ref|YP_001058525.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 668]
 gi|126448487|ref|YP_001080140.1| cell division protein FtsH [Burkholderia mallei NCTC 10247]
 gi|126452144|ref|YP_001065785.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei
           1106a]
 gi|134282887|ref|ZP_01769590.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 305]
 gi|167002789|ref|ZP_02268579.1| cell division protein FtsH [Burkholderia mallei PRL-20]
 gi|167719065|ref|ZP_02402301.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei DM98]
 gi|167738063|ref|ZP_02410837.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 14]
 gi|167815247|ref|ZP_02446927.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 91]
 gi|167845200|ref|ZP_02470708.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei
           B7210]
 gi|167893752|ref|ZP_02481154.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 7894]
 gi|167902200|ref|ZP_02489405.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei NCTC
           13177]
 gi|167910442|ref|ZP_02497533.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 112]
 gi|167918468|ref|ZP_02505559.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei
           BCC215]
 gi|217423524|ref|ZP_03455025.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 576]
 gi|237811779|ref|YP_002896230.1| cell division protease FtsH [Burkholderia pseudomallei MSHR346]
 gi|238563620|ref|ZP_00438574.2| cell division protease FtsH [Burkholderia mallei GB8 horse 4]
 gi|242316664|ref|ZP_04815680.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei
           1106b]
 gi|254177646|ref|ZP_04884301.1| cell division protein FtsH [Burkholderia mallei ATCC 10399]
 gi|254180202|ref|ZP_04886801.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 1655]
 gi|254188379|ref|ZP_04894890.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254198030|ref|ZP_04904452.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei S13]
 gi|254199451|ref|ZP_04905817.1| cell division protein FtsH [Burkholderia mallei FMH]
 gi|254205764|ref|ZP_04912116.1| cell division protein FtsH [Burkholderia mallei JHU]
 gi|254258466|ref|ZP_04949520.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei
           1710a]
 gi|254298036|ref|ZP_04965489.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 406e]
 gi|254358835|ref|ZP_04975108.1| cell division protein FtsH [Burkholderia mallei 2002721280]
 gi|52209409|emb|CAH35354.1| FtsH endopeptidase [Burkholderia pseudomallei K96243]
 gi|52428968|gb|AAU49561.1| cell division protein FtsH [Burkholderia mallei ATCC 23344]
 gi|76581298|gb|ABA50773.1| cell division protein FtsH [Burkholderia pseudomallei 1710b]
 gi|121227046|gb|ABM49564.1| cell division protein FtsH [Burkholderia mallei SAVP1]
 gi|124294473|gb|ABN03742.1| cell division protein FtsH [Burkholderia mallei NCTC 10229]
 gi|126218925|gb|ABN82431.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 668]
 gi|126225786|gb|ABN89326.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei
           1106a]
 gi|126241357|gb|ABO04450.1| cell division protein FtsH [Burkholderia mallei NCTC 10247]
 gi|134245973|gb|EBA46064.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 305]
 gi|147749047|gb|EDK56121.1| cell division protein FtsH [Burkholderia mallei FMH]
 gi|147753207|gb|EDK60272.1| cell division protein FtsH [Burkholderia mallei JHU]
 gi|148027962|gb|EDK85983.1| cell division protein FtsH [Burkholderia mallei 2002721280]
 gi|157807652|gb|EDO84822.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 406e]
 gi|157936058|gb|EDO91728.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei
           Pasteur 52237]
 gi|160698685|gb|EDP88655.1| cell division protein FtsH [Burkholderia mallei ATCC 10399]
 gi|169654771|gb|EDS87464.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei S13]
 gi|184210742|gb|EDU07785.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 1655]
 gi|217393382|gb|EEC33403.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 576]
 gi|237505527|gb|ACQ97845.1| cell division protease FtsH [Burkholderia pseudomallei MSHR346]
 gi|238520336|gb|EEP83797.1| cell division protease FtsH [Burkholderia mallei GB8 horse 4]
 gi|242139903|gb|EES26305.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei
           1106b]
 gi|243061550|gb|EES43736.1| cell division protein FtsH [Burkholderia mallei PRL-20]
 gi|254217155|gb|EET06539.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei
           1710a]
          Length = 628

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 90/249 (36%), Gaps = 23/249 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAA-------KARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G  EA   +   ++         K        VL VGPPG GKT LA+ +A E 
Sbjct: 152 NFSDVAGCDEAKEEVSELVDFLRDPQKFQKLGGRIPRGVLLVGPPGTGKTLLARAIAGEA 211

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  +    +     ++FIDEI  +       +    +
Sbjct: 212 KVPFFSISGSDFVEMFVGVGAARVRDMFEQAKKHAPCIVFIDEIDAVGRHRGAGMGGGND 271

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  M+ E     +     S   +IAAT R  +L   L    RF   + +   +I 
Sbjct: 272 EREQTLNQMLVEMDGFEAN----SGVIVIAATNRSDVLDKALLRPGRFDRQVYVGLPDIR 327

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++   +   +A   +AA         +      L+     FA     + +  +  
Sbjct: 328 GREQIMRVHLRKVPIANDVDAAVIARGTPGFSGADLANLVNEAALFAARRGKRIVEMQDF 387

Query: 247 DAALLRLAI 255
           + A  ++ +
Sbjct: 388 EDAKDKIFM 396


>gi|83747762|ref|ZP_00944796.1| Cell division protein ftsH [Ralstonia solanacearum UW551]
 gi|207723996|ref|YP_002254394.1| atp-dependent zinc metallopeptidase (cell division protein ftsh)
           [Ralstonia solanacearum MolK2]
 gi|207742906|ref|YP_002259298.1| atp-dependent zinc metallopeptidase (cell division protein ftsh)
           [Ralstonia solanacearum IPO1609]
 gi|300703814|ref|YP_003745416.1| cell division protein, ATP-dependent zinc-metallo protease; aaa
           ATPase and peptidase m41 families [Ralstonia
           solanacearum CFBP2957]
 gi|83725534|gb|EAP72678.1| Cell division protein ftsH [Ralstonia solanacearum UW551]
 gi|206589204|emb|CAQ36166.1| atp-dependent zinc metallopeptidase (cell division protein ftsh)
           [Ralstonia solanacearum MolK2]
 gi|206594301|emb|CAQ61228.1| atp-dependent zinc metallopeptidase (cell division protein ftsh)
           [Ralstonia solanacearum IPO1609]
 gi|299071477|emb|CBJ42799.1| Cell division protein, ATP-dependent zinc-metallo protease; AAA
           ATPase and peptidase M41 families [Ralstonia
           solanacearum CFBP2957]
          Length = 628

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 85/220 (38%), Gaps = 16/220 (7%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLT 101
           K        VL VGPPG GKT LA+ +A E  V F S SG       V   A  +  +  
Sbjct: 181 KLGGRIPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEMFVGVGAARVRDMFE 240

Query: 102 NLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDL--MVGEGPSARSVKINLSRFTLI 157
           N + +   ++FIDEI  +       +    ++ +  L  M+ E     +     S   +I
Sbjct: 241 NAKKQAPCIVFIDEIDAVGRHRGAGMGGGNDEREQTLNQMLVEMDGFEAN----SGVIVI 296

Query: 158 AATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRS 215
           AAT R  +L   L    RF   + +   +I   + I++   +   +    +A+       
Sbjct: 297 AATNRADVLDKALLRPGRFDRQVYVGLPDIRGREQILKVHMRKVPIGNDVDASVLARGTP 356

Query: 216 RGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255
             +      L+     FA   + + +  +  + A  ++ +
Sbjct: 357 GFSGADLANLVNEAALFAARRNKRVVDMQDFEDAKDKIYM 396


>gi|326489719|dbj|BAK01840.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326531584|dbj|BAJ97796.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 359

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 40/244 (16%), Positives = 77/244 (31%), Gaps = 40/244 (16%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L +    +    +   RP++L +     +    +    +  +     L H+L  GPPG G
Sbjct: 27  LSAAAAVKSSPWVEKYRPQSLADVAAHRDIVDTIDRLTDENR-----LPHLLLYGPPGTG 81

Query: 67  KTTLAQVVAR-----ELGVNFRSTSGPVIAKAGDLAALLTN-LEDRDVLF---------- 110
           KT+    VAR     + G      +       G +   + +      + F          
Sbjct: 82  KTSTILAVARKIYGSQYGNMILELNASDERGIGVVRQQIQDFASAHSLSFGAKPAVKLVL 141

Query: 111 IDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           +DE   ++   +  L   +E +            RS +  L           V  +   L
Sbjct: 142 LDEADAMTKDAQFALRRVIEKYT-----------RSTRFAL-------ICNHVNKIIPAL 183

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
           Q R     R    +   +   ++   K  GL V +     +   S G  R +  +L+   
Sbjct: 184 QSRC-TRFRFAPLDGSHVSERLRHIIKSEGLDVDEGGLSALVRLSNGDMRKSLNILQSTH 242

Query: 231 DFAE 234
             ++
Sbjct: 243 MASQ 246


>gi|325924511|ref|ZP_08186030.1| membrane protease FtsH catalytic subunit [Xanthomonas gardneri ATCC
           19865]
 gi|325545006|gb|EGD16341.1| membrane protease FtsH catalytic subunit [Xanthomonas gardneri ATCC
           19865]
          Length = 646

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 52/246 (21%), Positives = 86/246 (34%), Gaps = 23/246 (9%)

Query: 26  TLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  EA   +   +       +  K   +    VL VGPPG GKT LA+ +A E 
Sbjct: 163 TFADVAGCDEAKEEVSELVDFLRDPTKFTKLGGKIPRGVLMVGPPGTGKTLLARAIAGEA 222

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  +    +     ++FIDEI  +       L    +
Sbjct: 223 KVPFFSISGSDFVEMFVGVGASRVRDMFEQAKKHAPCIIFIDEIDAVGRHRGAGLGGGHD 282

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E       +       +IAAT R  +L   L    RF   + +   +++
Sbjct: 283 EREQTLNQLLVEMDGFEGGEG----VIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVK 338

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++   +   LA               +      L      FA     K +  +  
Sbjct: 339 GREQILRVHMRKLPLADDVVPMVIARGTPGFSGADLANLCNEAALFAARGSEKEVRMDHF 398

Query: 247 DAALLR 252
           D A  +
Sbjct: 399 DRARDK 404


>gi|242761705|ref|XP_002340232.1| cell division control protein Cdc48 [Talaromyces stipitatus ATCC
           10500]
 gi|218723428|gb|EED22845.1| cell division control protein Cdc48 [Talaromyces stipitatus ATCC
           10500]
          Length = 822

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 49/258 (18%), Positives = 87/258 (33%), Gaps = 17/258 (6%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLED 105
           +    +L  GPPG GKT +A+ VA E G  F   +GP I          +L       E 
Sbjct: 254 KPPRGILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEK 313

Query: 106 RD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
               ++FIDEI  ++   E+             +V +  +        S   ++AAT R 
Sbjct: 314 NSPAIIFIDEIDSIAPKREK-----TNGEVERRVVSQLLTLMDGMKARSNIVVMAATNRP 368

Query: 164 GLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRI 221
             +   L+   RF   + +   +      I+Q   K   LA   +     A         
Sbjct: 369 NSIDPALRRFGRFDREVDIGIPDPTGRLEILQIHTKNMKLAEDVDLEAIAAETHGYVGSD 428

Query: 222 AGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVG 281
              L        +    K    ++ +  +    +D +G    + R+   ++       V 
Sbjct: 429 IASLCSEAAM--QQIREKMDLIDLDEDTIDAEVLDSLGVTMENFRFALGVSNPSALREVA 486

Query: 282 IETISAGLSEPRDAIEDL 299
           +  +     E    +ED+
Sbjct: 487 VVEVPNVRWEDIGGLEDV 504



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 47/218 (21%), Positives = 78/218 (35%), Gaps = 15/218 (6%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--V 108
           VLF GPPG GKT LA+ VA E   NF S  GP +          ++  +          V
Sbjct: 533 VLFYGPPGTGKTMLAKAVANECSANFISVKGPELLSMWFGESESNIRDIFDKARAAAPCV 592

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +F+DE+  ++      +  A      D +V +  +      +     +I AT R   L  
Sbjct: 593 VFLDELDSIAKARGGSVGDA--GGASDRVVNQLLTEMDGMTSKKNVFVIGATNRPEQLDP 650

Query: 169 PLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
            L    R    + +   +    + I++   + T +A   + A   +     +    G + 
Sbjct: 651 ALCRPGRLDTLVYVPLPDQASREGILRAQLRKTPVAPDVDLAFIASKTHGFSGADLGFVT 710

Query: 227 RRVRDFA---EVAHAKTITREIADAALLRLAIDKMGFD 261
           +R    A    +A      RE   A       +  G D
Sbjct: 711 QRAVKLAIKQSIALDIERQREREAAGEDVEMDEAEGED 748


>gi|167823656|ref|ZP_02455127.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 9]
 gi|226196166|ref|ZP_03791751.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei
           Pakistan 9]
 gi|225931752|gb|EEH27754.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei
           Pakistan 9]
          Length = 628

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 90/249 (36%), Gaps = 23/249 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAA-------KARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G  EA   +   ++         K        VL VGPPG GKT LA+ +A E 
Sbjct: 152 NFSDVAGCDEAKEEVSELVDFLRDPQKFQKLGGRIPRGVLLVGPPGTGKTLLARAIAGEA 211

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  +    +     ++FIDEI  +       +    +
Sbjct: 212 KVPFFSISGSDFVEMFVGVGAARVRDMFEQAKKHAPCIVFIDEIDAVGRHRGAGMGGGND 271

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  M+ E     +     S   +IAAT R  +L   L    RF   + +   +I 
Sbjct: 272 EREQTLNQMLVEMDGFEAN----SGVIVIAATNRSDVLDKALLRPGRFDRQVYVGLPDIR 327

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++   +   +A   +AA         +      L+     FA     + +  +  
Sbjct: 328 GREQIMRVHLRKVPIANDVDAAVIARGTPGFSGADLANLVNEAALFAARRGKRIVEMQDF 387

Query: 247 DAALLRLAI 255
           + A  ++ +
Sbjct: 388 EDAKDKIFM 396


>gi|86610266|ref|YP_479028.1| AAA family ATPase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558808|gb|ABD03765.1| ATPase, AAA family [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 628

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 70/322 (21%), Positives = 118/322 (36%), Gaps = 35/322 (10%)

Query: 9   SRNVSQEDADISLLRPRT-----LEEFTGQVEACSNLKVFIEA--------AKARAEALD 55
           S+    +    S  RP +     L++  G  E    L+  +E         AK   +   
Sbjct: 81  SKAAVPDPPATSADRPESWAGPRLKDVGGLREQLQALREMVEIPLKRPDLLAKLGLDPPR 140

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------ 107
            VL VGPPG GKT  A+ +A  LGVN+ +  GP +     G+  A L  L ++       
Sbjct: 141 GVLLVGPPGTGKTLTARALAESLGVNYIAIVGPELIGKYYGEAEARLRQLFEKAAKSAPC 200

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           ++FIDEI  L           +E      +V +        +      ++AAT R   L 
Sbjct: 201 LVFIDEIDALVPNR-----ATVEGEVEKRLVAQMLGLMDGFVAQKGIVVLAATNRPEALD 255

Query: 168 NPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
             L+   RF   +     + E  + I+    +   LA  D     +A ++ G      R 
Sbjct: 256 PALRRPGRFDREVIFKVPDREGRREILAIHTRGMPLA-EDVDLDSLADQTLGFVGADLRG 314

Query: 226 LRRVRDFAEVAHAKTITREIADAALLRLAID-KMGFDQLDLRYLTMI-ARNFGGGPVGIE 283
           L +   +A +             +L   A D +    Q+    L  +   +     V  +
Sbjct: 315 LCQAAAYAALRRQVPDLGSPIPESLTVTAADFQQALQQVKPAVLRSVEIESPQ---VSWD 371

Query: 284 TISAGLSEPRDAIEDLIEPYMI 305
            I  GL   +  +++ IE  ++
Sbjct: 372 QI-GGLEHAKQILQEAIEGSLL 392



 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 59/250 (23%), Positives = 95/250 (38%), Gaps = 29/250 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAA--------KARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           + ++  G   A   L+  IE +        +A+A+A   +L  GPPG GKT LA+ +A +
Sbjct: 369 SWDQIGGLEHAKQILQEAIEGSLLHPELYEQAQAQAPKGILLSGPPGTGKTLLAKAIASQ 428

Query: 78  LGVNFRSTSGPVI--AKAGDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAM 129
              NF + SGP +     G     +  L  R       V+FIDEI  L+           
Sbjct: 429 AKANFIAVSGPELLSKWVGSSEQAVRELFARARQCAPCVIFIDEIDTLAPARGSYSGD-- 486

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                D ++G+  +            ++AAT R   L   L    R  + + +   +   
Sbjct: 487 -SGVSDRVLGQLLAELDGIRPSQGVLVVAATNRKASLDPALTRAGRLELHLSVELPDRSG 545

Query: 188 LKTI--VQRGAKLTGLAVTDEAACE------IAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
            + I  V    +  G  V  +   E       A  +  + R A   +RR R  +E   AK
Sbjct: 546 RREILAVHNRKRPLGPDVDLQGWAEQTEGWSGADLALLSNRAAIAAIRRHRATSETVDAK 605

Query: 240 TITREIADAA 249
           T+  +  D  
Sbjct: 606 TLVIQQEDFC 615


>gi|1176230|sp|P42811|PRS2_METTM RecName: Full=Putative 26S protease regulatory subunit homolog
           MTBMA_c13930
 gi|809719|emb|CAA58665.1| orf1 [Methanothermobacter thermautotrophicus]
          Length = 372

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 52/248 (20%), Positives = 92/248 (37%), Gaps = 21/248 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIE----AAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           T+++  GQ +A    ++ +       + R  A  +VLF G PG GKT LA+ +A EL V 
Sbjct: 125 TMDDVIGQEDAKIKCRIIMRYLEDPDRFRDWAPRNVLFHGSPGTGKTMLAKSLANELRVP 184

Query: 82  FRSTSGPVI--AKAGDLAALLTNLED---RD---VLFIDEIHRLSIIVEEILYPAMEDFQ 133
                   +     GD A  +  L +   +    V+FIDE+  + +              
Sbjct: 185 LYLIKATSLIGEHVGDGARQIHELYELASKTAPSVIFIDEMDAIGLDRRFQSLRGDVSEV 244

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           ++ ++ E                I AT    LL N ++ RF   I       ++ + +++
Sbjct: 245 VNALLTEMDGINQNWG----VVTIGATNNPELLDNAIRSRFEEEIEFKLPGDDERRMMLE 300

Query: 194 RGAKLTGLAVT---DEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           +  +   L V    D+        S     I  R+L+     A    +  + RE  + AL
Sbjct: 301 KYIETMPLDVDFSVDKLVKLTKGMSGRD--IKERVLKTALHRALADESPRVEREHIEYAL 358

Query: 251 LRLAIDKM 258
               +   
Sbjct: 359 KERDLKSE 366


>gi|261881243|ref|ZP_06007670.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
 gi|270332020|gb|EFA42806.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
          Length = 363

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 88/224 (39%), Gaps = 17/224 (7%)

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD-V 108
            +L  G PG GKT++A  ++ + G+         I      + A +L  +         +
Sbjct: 120 SLLLYGAPGCGKTSIAHYISEQTGLPLVVARLDGIVSSLLGSTAKNLRKIFQYASSMPCI 179

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           LF+DE   ++   ++      E  +L  ++      +++    S   L+AAT    LL  
Sbjct: 180 LFLDEFDAIAKARDDN----HELGELKRVI--NSLLQNIDELPSSCVLLAATNHPDLLDK 233

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRS---RGTPRIAGRL 225
            +  RF + + +   + + +  IV          VTD++A    +       +P     +
Sbjct: 234 AVWRRFFMKLEVEMPDKDAIVKIVTSQLSGFDATVTDDSAKMNILTDLLKDFSPSDIVTM 293

Query: 226 LRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLT 269
           L +++  + +   K I+ E   AA+          D   ++YL+
Sbjct: 294 LNKLKVQSVINGTKQISYEQIVAAIYEYDGKHKKKDDF-VKYLS 336


>gi|194290032|ref|YP_002005939.1| DNA polymerase III subunits gamma and tau [Cupriavidus taiwanensis
           LMG 19424]
 gi|193223867|emb|CAQ69876.1| DNA POLYMERASE III (SUBUNITS TAU AND GAMMA) [Cupriavidus
           taiwanensis LMG 19424]
          Length = 769

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 83/230 (36%), Gaps = 24/230 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPR      GQ      L   +E      + L H  LF G  G+GKTTL++++A+ L   
Sbjct: 11  RPRDFTTLVGQEHVVRALTHALE-----QQRLHHAYLFTGTRGVGKTTLSRILAKALNCT 65

Query: 82  FRSTSGPVIAKA-GDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAMEDFQ 133
               SG + A+  G   A       R V +I+        +  ++ ++++ +Y       
Sbjct: 66  GPDGSGGITAEPCGQCKACQEIDSGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRF 125

Query: 134 LDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
              M+ E             ++++        I ATT    +   +  R  +   L    
Sbjct: 126 KVYMIDEVHMLTNHAFNAMLKTLEEPPGHVKFILATTDPQKIPVTVLSRC-LQFNLKQMP 184

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
              + + +       G+A    A   +A  + G+ R A  L  +   ++ 
Sbjct: 185 PGHIVSHLDHILAQEGIAHDGNALRLLAQAAHGSMRDALSLTDQAIAYSA 234


>gi|229582162|ref|YP_002840561.1| AAA ATPase central domain protein [Sulfolobus islandicus Y.N.15.51]
 gi|228012878|gb|ACP48639.1| AAA ATPase central domain protein [Sulfolobus islandicus Y.N.15.51]
          Length = 372

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 65/197 (32%), Gaps = 44/197 (22%)

Query: 24  PR-TLEEFTGQVEACSNLKVFIEAAKARAEALD-----HVLFVGPPGLGKTTLAQVVARE 77
           P+ + ++  G  +    L+  I     R +         +L  GPPG GKT +A  VA E
Sbjct: 98  PKVSFKDIVGLDDVKEALREAIIYPTKRPDLFPLGWPRGILLYGPPGCGKTMIAAAVANE 157

Query: 78  LGVNFRSTSGPV------------IAKAGDLAALLTNLEDR-DVLFIDEIHRLS------ 118
           +   F                   +A    +A   +  +++  ++FIDE+  L       
Sbjct: 158 IDSIFIQLDAASVMSKWLGEAEKNVANVFKMAREESKKQNKPTIIFIDELDALLGVYSTE 217

Query: 119 -----------IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
                      +   + L    E++++ ++       R  +  L RF           + 
Sbjct: 218 VGGEARVRNQFLKEMDGLLDKSENYKVYVIGATNKPWRLDEAFLRRFQK--------RIY 269

Query: 168 NPLQDRFGIPIRLNFYE 184
            PL D         +Y 
Sbjct: 270 VPLPDYEQRLSLFKYYT 286


>gi|318041651|ref|ZP_07973607.1| cell division protein FtsH [Synechococcus sp. CB0101]
          Length = 600

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 66/333 (19%), Positives = 114/333 (34%), Gaps = 39/333 (11%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAR 76
           P   E+  G  EA   L+  +   K         A     VL VGPPG GKT LA+ +A 
Sbjct: 139 PVRFEDVAGIQEAKEELQEVVAFLKEPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAG 198

Query: 77  ELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPA 128
           E GV F S +            A  +  L    +++   ++FIDEI  +       +   
Sbjct: 199 EAGVPFFSMAASEFVELFVGVGASRVRDLFRQAKEKAPCIVFIDEIDAVGRQRGAGIGGG 258

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
            ++ +  L   +  +      + S   L+AAT R  +L   L    RF   I ++  +  
Sbjct: 259 NDEREQTL--NQLLTEMDGFADNSGVILLAATNRPDVLDTALMRPGRFDRRIHVDLPDRR 316

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I+   A+   L      A   +     +      LL              I     
Sbjct: 317 GREAILAVHARSRPLDPEVSLADWASRTPGFSGADLSNLLNEAAILTARRERSCIDDSAM 376

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAI---------- 296
             AL R+ +        D     +IA +  G  +    + A     +  +          
Sbjct: 377 GDALERITMGLTAAPLQDSAKKRLIAYHEIGHALLTTLLPAADRLDKVTLLPRAGGVGGF 436

Query: 297 ------EDLIEPYMIQQGFIQRTPRGRLLMPIA 323
                 ED+++  +I + ++Q     RL++ + 
Sbjct: 437 ARTMPDEDVLDSGLISKAYLQ----ARLVVAMG 465


>gi|312129917|ref|YP_003997257.1| atpase associated with various cellular activities aaa_3
           [Leadbetterella byssophila DSM 17132]
 gi|311906463|gb|ADQ16904.1| ATPase associated with various cellular activities AAA_3
           [Leadbetterella byssophila DSM 17132]
          Length = 318

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 74/206 (35%), Gaps = 28/206 (13%)

Query: 30  FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPV 89
             GQ E     K+ + A   +     H L VG PGL KT L Q +A  L ++F       
Sbjct: 26  IVGQEETV---KLLLTAVFCQG----HCLLVGVPGLAKTLLVQTIASALDLDFNRIQFTP 78

Query: 90  IAKAGDLAALLTNLEDR-----------DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138
                D+    T    R           +++  DEI+R     +  L  AM+++ + +  
Sbjct: 79  DLMPSDITGSETLDNQRNFKFVKGPVFANIILADEINRTPPKTQSALLEAMQEYAVTV-- 136

Query: 139 GEGPSARSVKINLSRFTLIAATTRVGLLTNPL----QDRFGIPIRLNFYEIEDLKTIVQR 194
               S +   ++   F L          T PL     DRF   + L++  +E    IV+ 
Sbjct: 137 ----SGQKHNLSRPFFVLATQNPIEQEGTYPLPEAQLDRFMFMVSLDYPTLEQEMQIVKN 192

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPR 220
                 +++      E  +  +   R
Sbjct: 193 TTSSREVSINKVLGAEEIVEFQQLIR 218


>gi|312086086|ref|XP_003144939.1| ATPase [Loa loa]
 gi|307759896|gb|EFO19130.1| ATPase [Loa loa]
          Length = 737

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 53/297 (17%), Positives = 103/297 (34%), Gaps = 49/297 (16%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQ------VEACSN--LKVFIEAA------------ 47
           +S    + D  +  + P  + +F  Q       +   N  LK+ IE A            
Sbjct: 440 MSELFQRFDVALKRVHPTGIRQFVLQVPDVNWEDIGGNRELKMKIEQAVLWPYRYPEIFK 499

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLAALLTNLED 105
           +  ++    +L  GPPG  KT +A+ +A +  +NF +  GP +     G+    +  L  
Sbjct: 500 RFASKPPSGILLYGPPGCSKTLIARAIASQSRMNFLAVKGPELFSKWVGESERAVRELFR 559

Query: 106 R------DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA 159
           R       ++F DEI  +     +     + +  L  ++ E               ++AA
Sbjct: 560 RARQVAPAIIFFDEIDAVGANRGDRNESHVGERVLTQLLTELDGLE----EKGDVMVLAA 615

Query: 160 TTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRG 217
           T R   L + L    RF + I +   + E    I++       + V  +           
Sbjct: 616 TNRPDRLDSALLRPGRFNLTIHVPLPDEETRLEILRIRLNHMKVNVDLD----------- 664

Query: 218 TPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARN 274
                  + +R + F+     +   + + +A L     DK+ F         ++ R 
Sbjct: 665 ----VEDIGKRTKGFSGAEVVELCDQAVREALLENRDADKLEFRHFHQALKEIMPRT 717



 Score = 38.9 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 65/178 (36%), Gaps = 6/178 (3%)

Query: 24  PRTLEEFTGQVEACSNLK-VFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           P T E+F G   A   ++ + I+  K   EA   V+  G  G GKT   +++   L    
Sbjct: 244 PLTFEQFGGAENAKKEIEEILIKPLKEGKEAC-SVILSGYTGCGKTLFLRIIQEYLQDKA 302

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGP 142
              SG  +    +  A+  N + +  L +D    +     E L   M+ +   L V    
Sbjct: 303 LWLSGRDLEDFLENGAI--NYDQKMALLVDNFDNM-KQCSEKLCNFMDTYTNFLFVLTVR 359

Query: 143 SARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
           +   + + L           V  L   + +   +  +    ++   + ++Q  A+ + 
Sbjct: 360 NVEVIGLPLRGRFPCELELLVPSLPERI-EILHLLFKTKQLKLSSAQELIQDIAQKSH 416


>gi|296229991|ref|XP_002760518.1| PREDICTED: nuclear valosin-containing protein-like isoform 1
           [Callithrix jacchus]
          Length = 856

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 46/212 (21%), Positives = 72/212 (33%), Gaps = 16/212 (7%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--V 108
           VL  GPPG GKT LA  +A EL +     + P I           L  L          +
Sbjct: 301 VLLHGPPGCGKTLLAHAIAGELDLPILKVAAPEIVSGVSGESEQKLRELFEQAVSNAPCI 360

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +FIDEI  ++   E             L+            + +R  +I AT R   L  
Sbjct: 361 IFIDEIDAITPKREVASKDMERRIVAQLLTCMDDLNNV--ASTARVLVIGATNRPDSLDP 418

Query: 169 PLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
            L+   RF   I L   +    + I+Q   +   L      A +    +  TP   G  L
Sbjct: 419 ALRRAGRFDREICLGIPDEASRERILQTLCRKLRLPQ----AFDFCHLAHLTPGFVGADL 474

Query: 227 RRVRDFAEVAHAKTITREIADAALLRLAIDKM 258
             +   A +     +  ++ +       +D +
Sbjct: 475 MALCREAAMCAVNRVLMKLQEQQKKDPEMDDL 506



 Score = 43.9 bits (102), Expect = 0.038,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 8/76 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL  GPPG GKT LA+ VA E G+NF S  GP +     G+    +  +  R       V
Sbjct: 618 VLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQIFQRAKNSAPCV 677

Query: 109 LFIDEIHRLSIIVEEI 124
           +F DE+  L     + 
Sbjct: 678 IFFDEVDALCPRRSDR 693


>gi|157413381|ref|YP_001484247.1| cell division protein FtsH4 [Prochlorococcus marinus str. MIT 9215]
 gi|157387956|gb|ABV50661.1| cell division protein FtsH4 [Prochlorococcus marinus str. MIT 9215]
          Length = 584

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 55/267 (20%), Positives = 102/267 (38%), Gaps = 33/267 (12%)

Query: 25  RTLEEFTGQVEACSNLK---VFIEAAKA----RAEALDHVLFVGPPGLGKTTLAQVVARE 77
              ++  G  EA   LK    F+   K      A+    VL +GPPG GKT LA+ +A E
Sbjct: 131 TRFDDVAGVPEAAEELKEVITFLREPKKFQNLGAKVPKGVLLIGPPGTGKTLLAKAIAGE 190

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
            GV F S S            A  +  L +  +++   ++FIDEI  +       +    
Sbjct: 191 SGVPFLSISASEFVELFVGVGASRVRDLFSKAKEKSPCIIFIDEIDSIGRQRGSGIGGGN 250

Query: 130 EDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           ++ +  L  ++ E         + S   ++AAT R  +L   L    RF   I +   ++
Sbjct: 251 DEREQTLNQLLTELDGF----ADNSGIIVLAATNRPDILDKALLRPGRFDRKIEVMLPDL 306

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           +  K I+     +  L+       ++   +  T   +G       D A + +   I    
Sbjct: 307 DGRKKILS----VHSLSKPLSTEVDLGYWASRTIGFSG------ADLANLMNESAIHCAR 356

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIA 272
            ++ L+     +   D++ +   + + 
Sbjct: 357 DESKLISDLHIENALDKITIGLRSSLI 383


>gi|119719222|ref|YP_919717.1| AAA family ATPase, CDC48 subfamily protein [Thermofilum pendens Hrk
           5]
 gi|119524342|gb|ABL77714.1| AAA family ATPase, CDC48 subfamily [Thermofilum pendens Hrk 5]
          Length = 732

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 54/274 (19%), Positives = 101/274 (36%), Gaps = 27/274 (9%)

Query: 2   MDREGLLSRNVSQE-DADISLLRPRTLEEFTGQVEACSNLKVFIE--------AAKARAE 52
           M+    ++ +  +E + ++  +     ++  G  +    L+  +E         ++   +
Sbjct: 432 MNAFREITPSALREIEVEVPAV---HWDDIGGLEDVKQQLREAVEWPLKYPESFSRLGID 488

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLAALLTNLEDR---- 106
               +L  GPPG GKT LA+ VA E   NF S  GP +     G+    +  L  +    
Sbjct: 489 PPKGILLYGPPGTGKTLLAKAVATESEANFVSIKGPEVYSKWVGESERAIRELFRKARQV 548

Query: 107 --DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164
              ++FIDEI  L+ +         +    + +V +  +       L    +IAAT R  
Sbjct: 549 APSIIFIDEIDALAPMRG---LVTSDSGVTERVVSQLLTEMDGLERLEGVVVIAATNRPD 605

Query: 165 LLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
           ++   L    RF   I +   + +    I++   +   LA   + A         T    
Sbjct: 606 IIDPALLRPGRFDRLIYVPPPDEKARLEILKVHTRRMPLAEDVDLAEIARKTEGYTGADI 665

Query: 223 GRLLRRVRDFA--EVAHAKTITREIADAALLRLA 254
             L+R     A  E      + R   + AL ++ 
Sbjct: 666 EVLVREAGLLALRENISIDKVYRRHFEEALKKVR 699



 Score = 52.0 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 8/80 (10%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLED 105
           +    +L  GPPG GKT LA+ VA E    F + +GP I           L  +    ++
Sbjct: 215 DPPKGILLYGPPGTGKTLLAKAVANETDAYFIAINGPEIMSKFYGESEQRLREIFEEAKE 274

Query: 106 R--DVLFIDEIHRLSIIVEE 123
               ++FIDEI  ++   EE
Sbjct: 275 HAPAIIFIDEIDAIAPKREE 294


>gi|29468568|gb|AAO34661.1| putative Lon2 protease [Oryza sativa Indica Group]
          Length = 948

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 52/268 (19%), Positives = 90/268 (33%), Gaps = 40/268 (14%)

Query: 16  DADISLLRPRTL--EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQ 72
           D +  +LR + +  E+  G  +    +  FI   K R  +   ++   GPPG+GKT++ +
Sbjct: 358 DENFDVLRAQRILDEDHYGLTDVKERILEFIAVGKLRGSSQGKIICLCGPPGVGKTSIGR 417

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNLED----------------RDVLFIDEIHR 116
            VAR L   F   S   ++   ++                           ++ ID+  +
Sbjct: 418 SVARALNRKFYRFSVGGLSDIAEIKGHRRTYVGAMPGKMVQCLKSVGTSNPLVLIDDTDK 477

Query: 117 LSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           L             E+L P      LD           V I+LS+   +     + ++  
Sbjct: 478 LGRGYSGDPANALLELLDPEQNANFLD-------HYLDVPIDLSKVLFVCTADVIEMIPG 530

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
           PL DR  I     +   E +       A+      T EA   +  +   T      L+  
Sbjct: 531 PLLDRMEIITIAGYITDEKMH-----IARDYLEKNTREACGIMPEQVEVTDSALLALIEN 585

Query: 229 VRDFAEVAH-AKTITREIADAALLRLAI 255
               A V +  K I +     AL  +  
Sbjct: 586 YCREAGVRNLQKQIEKVYRKIALQLVRQ 613


>gi|7671494|emb|CAB89335.1| FtsH-like protein Pftf precursor-like [Arabidopsis thaliana]
          Length = 687

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 63/293 (21%), Positives = 106/293 (36%), Gaps = 28/293 (9%)

Query: 26  TLEEFTG-----Q--VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T E+  G     Q   E    LK   + +   A+    VL  GPPG GKT LA+ +A E 
Sbjct: 221 TFEDVAGVDEAKQDFEEIVEFLKTPEKFSALGAKIPKGVLLTGPPGTGKTLLAKAIAGEA 280

Query: 79  GVNFRSTSGPVIA------KAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG           A     L    +     ++FIDEI  +  +    +    +
Sbjct: 281 GVPFFSLSGSEFIEMFVGVGASRARDLFNKAKANSPCIVFIDEIDAVGRMRGTGIGGGND 340

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E               +IAAT R  +L + L    RF   + +   +I 
Sbjct: 341 EREQTLNQILTEMDGFAGNTG----VIVIAATNRPEILDSALLRPGRFDRQVSVGLPDIR 396

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++  ++   L      +         +      L+      A       IT    
Sbjct: 397 GREEILKVHSRSKKLDKDVSLSVIAMRTPGFSGADLANLMNEAAILAGRRGKDKITLTEI 456

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           D ++ R+     G   +D +   ++A +  G       I A L+E  D ++ +
Sbjct: 457 DDSIDRIVAGMEGTKMIDGKSKAIVAYHEVGH-----AICATLTEGHDPVQKV 504


>gi|332799278|ref|YP_004460777.1| stage V sporulation protein K [Tepidanaerobacter sp. Re1]
 gi|332697013|gb|AEE91470.1| stage V sporulation protein K [Tepidanaerobacter sp. Re1]
          Length = 335

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 52/247 (21%), Positives = 93/247 (37%), Gaps = 50/247 (20%)

Query: 1   MMDREG---LLSRNVSQEDADISLLRPRTLEEFTGQVEAC---SNLKVFIEAAKARAE-- 52
           M D +       +   +E+    ++  + L+E  G  +       ++ F E  + RAE  
Sbjct: 37  MTDLDSHKITFEKVSDEEEKLEDIM--KELDELIGLSKVKNLVKEIQAFSEIQRKRAEEK 94

Query: 53  -----ALDHVLFVGPPGLGKTTLAQVVAR--------ELGVNFRSTSGPVIAK-----AG 94
                 + H++F G PG GKTT+A+++ +        E G         ++ +     A 
Sbjct: 95  LLAEPQVLHMIFKGNPGTGKTTVARLLGKIFKHIGILEKGHTVEVERADIVGEYIGHTAQ 154

Query: 95  DLAALLTNLEDRDVLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARS 146
                +       +LFIDE + L+   E        + L  AMED++ DL+V        
Sbjct: 155 KTRDQIKRARGG-ILFIDEAYSLARGGEKDFGKEAIDTLVKAMEDYKDDLIVILAGYKDE 213

Query: 147 VKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDE 206
           +   L              +   L+ RF I I  N Y +++L  I +  A+      + E
Sbjct: 214 MDWFL-------------QINPGLRSRFPIQIEFNDYSVDELMQIAKMMAEKRQYRFSPE 260

Query: 207 AACEIAM 213
           A  +   
Sbjct: 261 ALLQFED 267


>gi|156838346|ref|XP_001642880.1| hypothetical protein Kpol_1007p5 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156113457|gb|EDO15022.1| hypothetical protein Kpol_1007p5 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 672

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 61/282 (21%), Positives = 110/282 (39%), Gaps = 41/282 (14%)

Query: 13  SQEDADISLLRPRTLEE-FTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTL 70
           S+E   I+  R + L+E   G  +    +  FI   K   +    ++ FVGPPG+GKT++
Sbjct: 118 SKEQYSIARAR-KILDEDHYGMKDVKDRILEFIAVGKLLGKVNGKIICFVGPPGVGKTSI 176

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLA------------ALLTNLE----DRDVLFIDEI 114
            + +AR L   F   S   +    ++              ++ +L+       ++ IDEI
Sbjct: 177 GKSIARSLNRQFTRFSVGGLTDVAEIKGHRRTYIGALPGRIIQSLKKCQTQNPLILIDEI 236

Query: 115 HRL---------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
            ++         S  + E+L P   +  LD  +        + I+LS+   +     +  
Sbjct: 237 DKIGHGGIHGDPSAALLEVLDPEQNNSFLDNYL-------DIPIDLSKVLFVCTANTLDT 289

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           +  PL DR  + I L  Y  ++   IV+   +    +   EA  E       TP     L
Sbjct: 290 IPRPLLDRMEV-IELTGYVADEKVKIVE---QYLAPSAKKEAGLENVN-VDLTPEAITAL 344

Query: 226 LRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRY 267
           ++     + V + K    +I   A   +  D M  D+ +L  
Sbjct: 345 MKYYCRESGVRNLKKHIEKIYRKAAFNVVKD-MNLDETELEV 385


>gi|221195854|ref|ZP_03568907.1| Cell division protease FtsH homolog [Atopobium rimae ATCC 49626]
 gi|221184328|gb|EEE16722.1| Cell division protease FtsH homolog [Atopobium rimae ATCC 49626]
          Length = 631

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 56/243 (23%), Positives = 98/243 (40%), Gaps = 26/243 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ EA  +++  +   K         A +    L VGPPG GKT +A+ VA E 
Sbjct: 171 TFKDVAGQEEAKESMQEIVGFLKTPDKYTEIGARSPRGALLVGPPGTGKTLIAKAVAGEA 230

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F   +G           A  +  L     ++   ++FIDEI  +    +  L    E
Sbjct: 231 GVPFFQIAGSEFVEMFVGRGAAKVRDLFKQANEKAPCIIFIDEIDAVGKRRDAPLNTNDE 290

Query: 131 -DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            +  L+ ++ E     + K       ++AAT R   L   L    RF   I +   ++  
Sbjct: 291 REQTLNQLLSEMDGFDNHKG----IVVLAATNRPETLDQALLRPGRFDRRIPVELPDLAG 346

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            + I+    K+    V  E   ++++ ++ TP  +G  L  + + A +   +   R +  
Sbjct: 347 REDIL----KVHANDVKMEPGVDLSLVAKSTPGASGADLANIINEAALRAVRMGRRRVTT 402

Query: 248 AAL 250
             L
Sbjct: 403 EDL 405


>gi|171688928|ref|XP_001909404.1| hypothetical protein [Podospora anserina S mat+]
 gi|170944426|emb|CAP70537.1| unnamed protein product [Podospora anserina S mat+]
          Length = 771

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 85/244 (34%), Gaps = 22/244 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G  EA   L+  ++  +          +    VL VGPPG GKT LA+ VA E 
Sbjct: 278 RFSDVHGCDEAKEELQELVDFLRNPDKFNTLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 337

Query: 79  GVNFRSTSGPVIA------KAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAME 130
           GV F   SG           A  +  L    + +   ++FIDE+  +             
Sbjct: 338 GVPFFFMSGSEFDEIYVGVGAKRVRELFNAAKAKSPSIVFIDELDAIGGKRNSR-DATYV 396

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
              L+ ++ E           S   +IAAT     L   L    RF   + ++  ++   
Sbjct: 397 RQTLNQLLTEMDGFSQN----SGVIVIAATNFPESLDKALTRPGRFDRHVVVSLPDVRGR 452

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             I++  AK   +A            S  +      ++ +    A     K +T++  + 
Sbjct: 453 IAILKHHAKKIKMAADVRMEDIAGRTSGLSGAELENIVNQAAIHASKLKNKVVTQKDMEW 512

Query: 249 ALLR 252
           A  +
Sbjct: 513 AKDK 516


>gi|319652986|ref|ZP_08007091.1| hypothetical protein HMPREF1013_03706 [Bacillus sp. 2_A_57_CT2]
 gi|317395335|gb|EFV76068.1| hypothetical protein HMPREF1013_03706 [Bacillus sp. 2_A_57_CT2]
          Length = 275

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 37/108 (34%), Positives = 48/108 (44%), Gaps = 16/108 (14%)

Query: 26  TLEEFTG-QVEACSN----LKVFIE---AAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +LE+  G Q E        L +  E   + K   +    +L  GPPG GKT LAQ +A+E
Sbjct: 151 SLEDVGGIQEEMKEEIMQTLSILKEPERSLKMGIKPPKGILLYGPPGTGKTLLAQAIAKE 210

Query: 78  LGVNFRSTSGPVIA------KAGDLAALLTNLEDR--DVLFIDEIHRL 117
           LG  F STSG           A  +  L  N       V+FIDE+  L
Sbjct: 211 LGATFFSTSGSGFNELFVGVGASRVRNLFQNARKHAPAVVFIDEVDAL 258


>gi|39940094|ref|XP_359584.1| cell division control protein Cdc48 [Magnaporthe oryzae 70-15]
 gi|145010540|gb|EDJ95196.1| cell division control protein Cdc48 [Magnaporthe oryzae 70-15]
          Length = 820

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 76/229 (33%), Gaps = 28/229 (12%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLED 105
           +    VL  GPPG GKT +A+ VA E G  F   +GP I          +L       E 
Sbjct: 254 KPPRGVLLYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEK 313

Query: 106 RD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
               ++FIDEI  ++   E+             +V +  +        S   ++AAT R 
Sbjct: 314 NSPAIIFIDEIDSIAPKREK-----TNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRP 368

Query: 164 GLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVT---DEAACEIAMRSRGT 218
             +   L+   RF   + +   +      I+Q   K   L      ++ A E        
Sbjct: 369 NSIDPALRRFGRFDREVDIGIPDPTGRLEILQIHTKNMKLGDDVDLEQIAAETHGYVGSD 428

Query: 219 PRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRY 267
                     V      A  + I  ++    L    ID    D L +  
Sbjct: 429 ----------VAALCSEAAMQQIREKMDLIDLDEDTIDAEVLDSLGVTM 467



 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 50/256 (19%), Positives = 89/256 (34%), Gaps = 22/256 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVARE 77
             E+  G  E   +L+  ++      E            VLF GPPG GKT LA+ VA E
Sbjct: 494 RWEDIGGLDEVKQDLREQVQYPVDHPEKFLKFGLSPSRGVLFYGPPGTGKTMLAKAVANE 553

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
              NF S  GP +          ++  +          ++F+DE+  ++      +  A 
Sbjct: 554 CAANFISVKGPELLSMWFGESESNIRDIFDKARAAAPCIVFLDELDSIAKARGGSVGDA- 612

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                D +V +  +      +     +I AT R   L   L    R    I +   +   
Sbjct: 613 -GGASDRVVNQLLTEMDGMTSKKNVFVIGATNRPEQLDPALCRPGRLDSLIYVPLPDELG 671

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA--EVAHAKTITREI 245
             +I++   + T ++   +           +    G + +R    A  E   A     + 
Sbjct: 672 RLSILKAQLRKTPVSDDVDLQYIANKTHGFSGADLGFITQRAVKIAIKESITADINRTKA 731

Query: 246 ADAALLRLAIDKMGFD 261
            +AA   + +D+   D
Sbjct: 732 LEAAGEDVPMDEDAED 747


>gi|86142695|ref|ZP_01061134.1| ATP-dependent protease [Leeuwenhoekiella blandensis MED217]
 gi|85830727|gb|EAQ49185.1| ATP-dependent protease [Leeuwenhoekiella blandensis MED217]
          Length = 816

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 46/190 (24%), Positives = 74/190 (38%), Gaps = 33/190 (17%)

Query: 32  GQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           G  +    +  ++   K R +    +L   GPPG+GKT+L + VA  LG  +   S   +
Sbjct: 360 GLDDVKKRIIEYLAVLKLRNDMKSPILCLYGPPGVGKTSLGKSVAEALGREYVRMSLGGL 419

Query: 91  AKAGDLA------------ALLTNLED----RDVLFIDEIHRLSIIVE--------EILY 126
               ++              +L NL+       V  +DEI +LS   +        E+L 
Sbjct: 420 RDEAEIRGHRKTYIGAMPGRILQNLKKAGTSNPVFVLDEIDKLSNSNQGDPSSALLEVLD 479

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           P       D  +  G        +LS+   IA    +G +   L+DR  I I +  Y IE
Sbjct: 480 PEQNAEFHDNFLELG-------FDLSKVMFIATANNLGGIQPALRDRMEI-INVTGYTIE 531

Query: 187 DLKTIVQRGA 196
           +   I +R  
Sbjct: 532 EKVEIGKRHL 541


>gi|159113196|ref|XP_001706825.1| Katanin [Giardia lamblia ATCC 50803]
 gi|157434925|gb|EDO79151.1| Katanin [Giardia lamblia ATCC 50803]
          Length = 509

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 54/244 (22%), Positives = 82/244 (33%), Gaps = 37/244 (15%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALD-----------HVLFVGPPGLGKTTLAQVV 74
           T ++  G     S  K  +E A      L             VL  GPPG GKT LA+ +
Sbjct: 214 TFDQIAG----LSEAKRLLEEAVVLPMLLPDFFTGVRSPWRGVLLFGPPGTGKTLLAKAI 269

Query: 75  ARELGVNFRSTSGPVIAKA------GDLAALLTNLEDR--DVLFIDEIHRL--------- 117
           A + G  F S S  VI           +  L T    R    +FIDEI  +         
Sbjct: 270 AMQAGFTFFSASASVIESKYRGEAEKMVRGLFTIARARAPSCIFIDEIDAIMSARGSGED 329

Query: 118 ---SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRF 174
              S  ++  +   M+       VG G +    +        +AAT     L   L+ R 
Sbjct: 330 NECSRRIKAEILTQMQGVTTANGVGNGANGDFAEQEPKPVMTLAATNLPWDLDEALKRRL 389

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
              I +   + E  K +++    L  +   +    ++A R  G       +L R    A 
Sbjct: 390 EKRIYIPLPDFESRKQLLK--LNLKDITTVELDFDDLANRLEGFSGADISILVREVSMAP 447

Query: 235 VAHA 238
           +   
Sbjct: 448 LRRE 451


>gi|282860069|ref|ZP_06269150.1| endopeptidase La [Prevotella bivia JCVIHMP010]
 gi|282587157|gb|EFB92381.1| endopeptidase La [Prevotella bivia JCVIHMP010]
          Length = 822

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 54/297 (18%), Positives = 103/297 (34%), Gaps = 43/297 (14%)

Query: 11  NVSQEDADISLLRPRTLE-EFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKT 68
            V+++D D+   + R L+ +  G  +    +  +I   + R      +L   GPPG+GKT
Sbjct: 330 EVTEDDLDLKRAK-RILDKDHYGMDKVKERILEYIAVLRLRGNLKSPILCLYGPPGVGKT 388

Query: 69  TLAQVVARELGVNFRSTSGPVIAKAGDLA------------ALLTNLED----RDVLFID 112
           +L + VA  L   +   S   +    ++              ++ +L+       V  +D
Sbjct: 389 SLGKSVADALKRKYVRVSLGGVHDESEIRGHRKTYIGAMPGRIIKSLQKAGASNPVFILD 448

Query: 113 EIHRL---------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
           EI ++         S  + E+L P   +   D  +           +LS+   IA    +
Sbjct: 449 EIDKVTQNTLNGDPSSALLEVLDPEQNNAFHDNYLDLDY-------DLSKVLFIATANDL 501

Query: 164 GLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAG 223
             +  PL DR  I     +   E +  I +R      L  T              P+ A 
Sbjct: 502 NTIPQPLLDRMEIINVSGYITEEKI-EIAKRHLIPKELENT------GLNTLDVQPKFAK 554

Query: 224 RLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQL-DLRYLTMIARNFGGGP 279
             L ++ +            +  + AL ++A  +   D +   +       +  G P
Sbjct: 555 AALEKIIESYTRESGVRQLEKQINKALRKIAYKQALDDVMLYNKITPANIEDLIGKP 611


>gi|229584788|ref|YP_002843290.1| AAA ATPase central domain protein [Sulfolobus islandicus M.16.27]
 gi|228019838|gb|ACP55245.1| AAA ATPase central domain protein [Sulfolobus islandicus M.16.27]
          Length = 372

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 65/197 (32%), Gaps = 44/197 (22%)

Query: 24  PR-TLEEFTGQVEACSNLKVFIEAAKARAEALD-----HVLFVGPPGLGKTTLAQVVARE 77
           P+ + ++  G  +    L+  I     R +         +L  GPPG GKT +A  VA E
Sbjct: 98  PKVSFKDIVGLDDVKEALREAIIYPTKRPDLFPLGWPRGILLYGPPGCGKTMIAAAVANE 157

Query: 78  LGVNFRSTSGPV------------IAKAGDLAALLTNLEDR-DVLFIDEIHRLS------ 118
           +   F                   +A    +A   +  +++  ++FIDE+  L       
Sbjct: 158 IDSIFIQLDAASVMSKWLGEAEKNVANVFKMAREESKKQNKPTIIFIDELDALLGVYSTE 217

Query: 119 -----------IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
                      +   + L    E++++ ++       R  +  L RF           + 
Sbjct: 218 VGGEARVRNQFLKEMDGLLDKSENYKVYVIGATNKPWRLDEAFLRRFQK--------RIY 269

Query: 168 NPLQDRFGIPIRLNFYE 184
            PL D         +Y 
Sbjct: 270 VPLPDYEQRLSLFKYYT 286


>gi|222480132|ref|YP_002566369.1| AAA family ATPase, CDC48 subfamily [Halorubrum lacusprofundi ATCC
           49239]
 gi|222453034|gb|ACM57299.1| AAA family ATPase, CDC48 subfamily [Halorubrum lacusprofundi ATCC
           49239]
          Length = 740

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 54/289 (18%), Positives = 99/289 (34%), Gaps = 30/289 (10%)

Query: 15  EDADISLLR------PR-TLEEFTG--------QVEACSNLKVFIEAAKARAEALDHVLF 59
            + + S +R      P+ + ++  G        Q      L    +  +   +    VL 
Sbjct: 442 NEVEPSAMREVLVELPKISWDDVGGLSEAQQQVQESVEWPLSSPEKFDRMGVDPPKGVLL 501

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDR------DVLFI 111
            GPPG GKT +A+ VA E   NF S  GP  +    G+    +     +       ++F 
Sbjct: 502 YGPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFRKARQVSPTIIFF 561

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+  L+    + +   + +  ++ ++ E          +    +I AT R  ++   L 
Sbjct: 562 DELDSLAPSRGQEMGNNVSERVVNQLLTELDGLE----EMGDVMVIGATNRPDMIDPALL 617

Query: 172 D--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
              RF   + +   + E  + I++   + T LA  D    EIA  + G        + R 
Sbjct: 618 RSGRFDRLVMIGQPDQEGRERILEIHTQDTPLA-PDVTLREIAEITDGYVGSDLEGIARE 676

Query: 230 RDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
                +                 L   +   +   L Y   +   F GG
Sbjct: 677 AAIEALRDDDDAEEVEMKHFRRALESVRPTINDDILAYYEEVEEQFKGG 725



 Score = 54.3 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 49/200 (24%), Positives = 75/200 (37%), Gaps = 23/200 (11%)

Query: 47  AKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALL 100
           +K   E    VL  GPPG GKT LA+ VA E   +F S +GP I           L  + 
Sbjct: 216 SKLGIEPPQGVLLHGPPGTGKTLLAKAVANETSASFFSIAGPEIISKYYGESEQQLREIF 275

Query: 101 TNLEDR--DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIA 158
            + ++    ++FIDE+  ++   E++           L+               +  +I 
Sbjct: 276 EDAKEESPSIIFIDELDSIAPKREDVTGEVERRVVAQLLTM-----MDGLETRGQVVVIG 330

Query: 159 ATTRVGLLTNPLQ-----DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEI-- 211
           AT RV  +   L+     DR       +    +++  I  RG  L+     D  A E   
Sbjct: 331 ATNRVDSVDPALRRPGRFDREIEIGVPDEVGRKEILQIHTRGMPLSDDVSLDHLADETHG 390

Query: 212 ---AMRSRGTPRIAGRLLRR 228
              A     T   A + LRR
Sbjct: 391 FVGADIESLTKEAAMKALRR 410


>gi|118594569|ref|ZP_01551916.1| ATP-dependent metalloprotease FtsH [Methylophilales bacterium
           HTCC2181]
 gi|118440347|gb|EAV46974.1| ATP-dependent metalloprotease FtsH [Methylophilales bacterium
           HTCC2181]
          Length = 630

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 92/250 (36%), Gaps = 23/250 (9%)

Query: 25  RTLEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
            T  +  G  E+   +   +E         K        VL VGPPG GKT LA+ +A E
Sbjct: 153 TTFADVAGCDESKEEVSEIVEFLKDPTKFHKLGGRIPRGVLMVGPPGTGKTLLARAIAGE 212

Query: 78  LGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
             V F S SG       V   A  +  +    +     ++FIDEI  +       +    
Sbjct: 213 AKVPFYSISGSDFVEMFVGVGAARVRDMFEQAKKSSPCIIFIDEIDAVGRHRGSGMGGGN 272

Query: 130 EDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           ++ +  L  ++ E     +     S   +IAAT R  +L   L    RF   + ++  +I
Sbjct: 273 DEREQTLNQLLVELDGFEAN----SGVIVIAATNRADVLDKALLRPGRFDRQVAVSLPDI 328

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           +  + I+    +   +    +A          +      L+     FA   + +T+  E 
Sbjct: 329 KGREQILMVHMRKVPIDPDVKADIVARGTPGFSGADLANLVNEAALFAARRNKRTVDMED 388

Query: 246 ADAALLRLAI 255
            + A  ++ +
Sbjct: 389 FEEAKDKIFM 398


>gi|145358053|ref|NP_568311.2| FTSH6 (FTSH PROTEASE 6); ATP-dependent peptidase/ ATPase/
           metallopeptidase/ peptidase/ zinc ion binding
           [Arabidopsis thaliana]
 gi|122231638|sp|Q1PDW5|FTSH6_ARATH RecName: Full=ATP-dependent zinc metalloprotease FTSH 6,
           chloroplastic; Short=AtFTSH6; Flags: Precursor
 gi|91806862|gb|ABE66158.1| FtsH protease [Arabidopsis thaliana]
 gi|332004753|gb|AED92136.1| cell division protease ftsH-6 [Arabidopsis thaliana]
          Length = 688

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 63/293 (21%), Positives = 106/293 (36%), Gaps = 28/293 (9%)

Query: 26  TLEEFTG-----Q--VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T E+  G     Q   E    LK   + +   A+    VL  GPPG GKT LA+ +A E 
Sbjct: 222 TFEDVAGVDEAKQDFEEIVEFLKTPEKFSALGAKIPKGVLLTGPPGTGKTLLAKAIAGEA 281

Query: 79  GVNFRSTSGPVIA------KAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG           A     L    +     ++FIDEI  +  +    +    +
Sbjct: 282 GVPFFSLSGSEFIEMFVGVGASRARDLFNKAKANSPCIVFIDEIDAVGRMRGTGIGGGND 341

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E               +IAAT R  +L + L    RF   + +   +I 
Sbjct: 342 EREQTLNQILTEMDGFAGNTG----VIVIAATNRPEILDSALLRPGRFDRQVSVGLPDIR 397

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++  ++   L      +         +      L+      A       IT    
Sbjct: 398 GREEILKVHSRSKKLDKDVSLSVIAMRTPGFSGADLANLMNEAAILAGRRGKDKITLTEI 457

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           D ++ R+     G   +D +   ++A +  G       I A L+E  D ++ +
Sbjct: 458 DDSIDRIVAGMEGTKMIDGKSKAIVAYHEVGH-----AICATLTEGHDPVQKV 505


>gi|78065910|ref|YP_368679.1| FtsH peptidase [Burkholderia sp. 383]
 gi|77966655|gb|ABB08035.1| membrane protease FtsH catalytic subunit [Burkholderia sp. 383]
          Length = 632

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 90/249 (36%), Gaps = 23/249 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAA-------KARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G  EA   +   ++         K        VL VGPPG GKT LA+ +A E 
Sbjct: 152 NFSDVAGCDEAKEEVSELVDFLRDPQKFQKLGGRIPRGVLLVGPPGTGKTLLARAIAGEA 211

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  +    +     ++FIDEI  +       +    +
Sbjct: 212 KVPFFSISGSDFVEMFVGVGAARVRDMFEQAKKHAPCIVFIDEIDAVGRHRGAGMGGGND 271

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  M+ E     +     S   +IAAT R  +L   L    RF   + +   +I 
Sbjct: 272 EREQTLNQMLVEMDGFEAN----SGVIVIAATNRSDVLDKALLRPGRFDRQVYVGLPDIR 327

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++   +   +A   +AA         +      L+     FA     + +  +  
Sbjct: 328 GREQIMRVHLRKVPIANDVDAAVIARGTPGFSGADLANLVNEAALFAARRGKRIVEMQDF 387

Query: 247 DAALLRLAI 255
           + A  ++ +
Sbjct: 388 EDAKDKIFM 396


>gi|134295360|ref|YP_001119095.1| FtsH peptidase [Burkholderia vietnamiensis G4]
 gi|134138517|gb|ABO54260.1| membrane protease FtsH catalytic subunit [Burkholderia
           vietnamiensis G4]
          Length = 631

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 90/249 (36%), Gaps = 23/249 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAA-------KARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G  EA   +   ++         K        VL VGPPG GKT LA+ +A E 
Sbjct: 152 NFSDVAGCDEAKEEVSELVDFLRDPQKFQKLGGRIPRGVLLVGPPGTGKTLLARAIAGEA 211

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  +    +     ++FIDEI  +       +    +
Sbjct: 212 KVPFFSISGSDFVEMFVGVGAARVRDMFEQAKKHAPCIVFIDEIDAVGRHRGAGMGGGND 271

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  M+ E     +     S   +IAAT R  +L   L    RF   + +   +I 
Sbjct: 272 EREQTLNQMLVEMDGFEAN----SGVIVIAATNRSDVLDKALLRPGRFDRQVYVGLPDIR 327

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++   +   +A   +AA         +      L+     FA     + +  +  
Sbjct: 328 GREQIMRVHLRKVPIANDVDAAVIARGTPGFSGADLANLVNEAALFAARRGKRIVEMQDF 387

Query: 247 DAALLRLAI 255
           + A  ++ +
Sbjct: 388 EDAKDKIFM 396


>gi|219123158|ref|XP_002181897.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217406498|gb|EEC46437.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 550

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 53/237 (22%), Positives = 86/237 (36%), Gaps = 26/237 (10%)

Query: 29  EFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARELGV 80
           +  G  E   N++  +E    R E   H        VL  GPPG GKT LA  VA +LGV
Sbjct: 1   DLGGMDEVVKNIRQLVEYPLIRPELYSHLGVDPPRGVLLRGPPGTGKTHLANAVAGQLGV 60

Query: 81  NFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEE--ILYPAM 129
            F   S P +          +  DL    +++    ++F+DE+  +     E        
Sbjct: 61  PFFRVSAPELVSGMSGESEGRIRDLFRTASSMAP-AIIFLDELDAIVPKRSEAGSSRGME 119

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
           +     L+      A       S   ++AAT R   +   L+   RF   I L   + + 
Sbjct: 120 KRMVAQLLTSMDMLAPVNNNKNSTVIVLAATNRADAMDPALRRAGRFDKEISLGVPDEQG 179

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
                +R  +     +      +  + +R TP   G  +R +   A V     I ++
Sbjct: 180 R----ERILRAMTKGMRLSGDFDFKVLARKTPGFVGADVRSLAKEAAVLAINRIFKD 232



 Score = 43.9 bits (102), Expect = 0.031,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 32/73 (43%), Gaps = 8/73 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--------AKAGDLAALLTNLEDRDV 108
           V+  GPPG GKT LA+ +A E G NF S  GP +         KA  L           +
Sbjct: 317 VMLYGPPGCGKTLLAKAIAHESGANFISVKGPELLDKYVGESEKAVRLVFERARSSSPCI 376

Query: 109 LFIDEIHRLSIIV 121
           +F DE+  L    
Sbjct: 377 VFFDELDSLVPRR 389


>gi|124023163|ref|YP_001017470.1| cell division protein FtsH4 [Prochlorococcus marinus str. MIT 9303]
 gi|123963449|gb|ABM78205.1| cell division protein FtsH4 [Prochlorococcus marinus str. MIT 9303]
          Length = 619

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 56/249 (22%), Positives = 89/249 (35%), Gaps = 19/249 (7%)

Query: 24  PRTLEEFTGQVEACSNLK---VFIEA----AKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           P   ++  G  EA   L+    F+       K  A     VL VG PG GKT LA+ +A 
Sbjct: 159 PIRFDDVAGITEAKEELQEVVTFLRQPESFIKLGALIPRGVLLVGAPGTGKTLLAKAIAG 218

Query: 77  ELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPA 128
           E  V F S +            A  +  L    +++   ++FIDEI  +       +   
Sbjct: 219 EADVPFFSMAASEFVELFVGVGASRVRDLFRKAKEKAPCIVFIDEIDAVGRQRGAGIGGG 278

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
            ++ +  L   +  +      + S   L+AAT R  +L   L    RF   I ++  +  
Sbjct: 279 NDEREQTL--NQLLTEMDGFADNSGVILLAATNRPDVLDAALMRPGRFDRRIEVSLPDRR 336

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             K I+   A+   LA               +      LL             +I  E  
Sbjct: 337 GRKEILAVHARTRPLAEEVCLQDWARRTPGFSGADLANLLNEAAILTARQEKASIGTEQL 396

Query: 247 DAALLRLAI 255
           +AAL R+ +
Sbjct: 397 EAALERITM 405


>gi|73971214|ref|XP_866075.1| PREDICTED: similar to Transitional endoplasmic reticulum ATPase
           (TER ATPase) (15S Mg(2+)-ATPase p97 subunit)
           (Valosin-containing protein) (VCP) isoform 5 [Canis
           familiaris]
          Length = 759

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 51/280 (18%), Positives = 95/280 (33%), Gaps = 34/280 (12%)

Query: 2   MDREGLLSRNVSQED-------ADISLLR------PR-TLEEFTGQVEACSNLKVFIEAA 47
           +D E + S  V+ +D       ++ S LR      P+ T E+  G  +    L+  ++  
Sbjct: 437 IDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYP 496

Query: 48  KARAEAL--------DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKA 93
               +            VLF GPPG GKT LA+ +A E   NF S  GP +         
Sbjct: 497 VEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESE 556

Query: 94  GDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINL 151
            ++  +          VLF DE+  ++                D ++ +  +        
Sbjct: 557 ANVREIFDKARQAAPCVLFFDELDSIAKARGGN--IGDGGGAADRVINQILTEMDGMSTK 614

Query: 152 SRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAAC 209
               +I AT R  ++   +    R    I +   + +    I++   + + +A   +   
Sbjct: 615 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEF 674

Query: 210 EIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
              M +  +      + +R    A     +    E    A
Sbjct: 675 LAKMTNGFSGADLTEICQRACKLAIRESIENHFEEAMRFA 714



 Score = 53.2 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 51/266 (19%), Positives = 89/266 (33%), Gaps = 32/266 (12%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------------VLFVGPPGLGKTTLA 71
           +L E  G  +     K   +  +     L H              +L  GPPG GKT +A
Sbjct: 197 SLNE-VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255

Query: 72  QVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEE 123
           + VA E G  F   +GP I          +L       E     ++FIDE+  ++   E+
Sbjct: 256 RAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK 315

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLN 181
                        +V +  +        +   ++AAT R   +   L+   RF   + + 
Sbjct: 316 -----THGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIG 370

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
             +      I+Q   K   LA  D    ++A  + G        L       +    K  
Sbjct: 371 IPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADLAAL-CSEAALQAIRKKMD 428

Query: 242 TREIADAALLRLAIDKMGFDQLDLRY 267
             ++ D  +    ++ +     D R+
Sbjct: 429 LIDLEDETIDAEVMNSLAVTMDDFRW 454


>gi|302413517|ref|XP_003004591.1| replication factor C subunit 3 [Verticillium albo-atrum VaMs.102]
 gi|261357167|gb|EEY19595.1| replication factor C subunit 3 [Verticillium albo-atrum VaMs.102]
          Length = 391

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 37/227 (16%), Positives = 72/227 (31%), Gaps = 14/227 (6%)

Query: 11  NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL 70
                   +   RP TL + +G  +  + +  F++        L H+L  GPPG GKT+ 
Sbjct: 37  EAEDSLPWVEKYRPATLADVSGHHDILATINKFVD-----KNRLPHLLLYGPPGTGKTST 91

Query: 71  AQVVAR------ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI 124
              +AR       +       +         +   +        +F              
Sbjct: 92  ILALARRIYGPENVRQMVLELNASDDRGIDVVREQIKTFASTKQIFTSARSGSGSSSGAA 151

Query: 125 LYPAMEDFQLDLMVGEGPSA--RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
            Y  +   + D M      A  R ++   +             L+  L  R     R + 
Sbjct: 152 GYKLIVLDEADAMTNTAQMALRRIMEKYTANTRFCIIANYAHKLSPALLSRC-TRFRFSP 210

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
            +  D++ +V R     G+ +  +A   +   ++G  R A  +L+  
Sbjct: 211 LKEGDIRVLVDRVVDEEGVRIRPDATDALVRLAKGDMRRALNVLQAC 257


>gi|261406092|ref|YP_003242333.1| Vesicle-fusing ATPase [Paenibacillus sp. Y412MC10]
 gi|261282555|gb|ACX64526.1| Vesicle-fusing ATPase [Paenibacillus sp. Y412MC10]
          Length = 500

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 50/259 (19%), Positives = 90/259 (34%), Gaps = 32/259 (12%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE-------ALDHVLFVGPPGLGKTTLAQVVAREL 78
           T EE  GQ  A   L+  ++      +        L  +L  GPPG GKT +A+  A   
Sbjct: 69  TFEEIGGQDNAKQELREALDFLIRHEDIKKFGIRPLKGILLTGPPGTGKTLMAKAAAHYT 128

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDR--------DVLFIDEIHRLSIIV--- 121
              F + SG           AG +  L  +  +R         ++FIDEI  +       
Sbjct: 129 DSIFVAASGSEFVEMYVGVGAGRIRDLFKDARNRAAKENKQNAIIFIDEIDVIGGKREGG 188

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIR 179
           ++  Y    +  L  M G          +  R  +IAAT R  +L + L    RF   I+
Sbjct: 189 QQREYDQTLNQLLTEMDG------IYSQDTPRILVIAATNRKEMLDSALLRPGRFDRHIQ 242

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           ++  + +    I+   A    L    +           +      ++     +    + +
Sbjct: 243 VDLPDKKGRTHILNLHAGNKPLHQDVDLEKIAEEAYGFSGAQLESVMNEAAIYTMRENEQ 302

Query: 240 TITREIADAALLRLAIDKM 258
            I +     A+ ++ + + 
Sbjct: 303 FIHQRHLSMAIDKVMMGER 321


>gi|154499606|ref|ZP_02037644.1| hypothetical protein BACCAP_03262 [Bacteroides capillosus ATCC
           29799]
 gi|150271684|gb|EDM98928.1| hypothetical protein BACCAP_03262 [Bacteroides capillosus ATCC
           29799]
          Length = 665

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 58/245 (23%), Positives = 90/245 (36%), Gaps = 27/245 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEAL-------DHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  E    L+  +E  +     L         +L VGPPG GKT LA+ VA E 
Sbjct: 168 TFADVAGADEEKEELREVVEFLRDPKRFLALGARIPKGILLVGPPGTGKTLLAKAVAGEA 227

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV+F S SG       V   A  +  L    +     ++FIDEI  +       L    +
Sbjct: 228 GVHFLSISGSDFVELYVGVGASRVRDLFDQAKKNSPAIVFIDEIDAVGRQRGTGLGGGHD 287

Query: 131 DFQLD----LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
           + +      L+  +G +A    I      ++AAT R  +L   L    RF   I +   +
Sbjct: 288 EREQTLNQLLVEMDGFAANEGVI------VMAATNRQDILDPALLRPGRFDRQIYVGAPD 341

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           I+  + I++  A+   L+   +           T      L+      A     + IT  
Sbjct: 342 IKGREEILKIHARNKPLSEDVDLKDVAKATGGFTGADLENLMNEAALLAARRGERFITMP 401

Query: 245 IADAA 249
               A
Sbjct: 402 DLHEA 406


>gi|119510340|ref|ZP_01629475.1| Peptidase M41, FtsH [Nodularia spumigena CCY9414]
 gi|119464977|gb|EAW45879.1| Peptidase M41, FtsH [Nodularia spumigena CCY9414]
          Length = 622

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 60/274 (21%), Positives = 97/274 (35%), Gaps = 23/274 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
             ++  G  EA   L   +   K         A     VL +GPPG GKT LA+ +A E 
Sbjct: 166 KFDDVAGVEEAKEELGEVVTFLKQPERFTAVGARIPKGVLLIGPPGTGKTLLAKAIAGEA 225

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG           A  +  L    +D    ++FIDEI  +       +    +
Sbjct: 226 GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKDSAPCLIFIDEIDAVGRQRGTGIGGGND 285

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E               +IAAT R  +L + L    RF   + ++  +++
Sbjct: 286 EREQTLNQLLTEMDGFEGNTG----IIIIAATNRPDVLDSALLRPGRFDRQVMVDAPDLK 341

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
               I+   A+   L  +             T      LL            + IT    
Sbjct: 342 GRAEILSVHARNKKLDSSVSLEAIARRTPGFTGADLANLLNEAAILTARRRKEAITILEI 401

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV 280
           D A+ R+     G   +D +   +IA +  G  +
Sbjct: 402 DHAIDRVVAGMEGTALVDSKNKRLIAYHEVGHAL 435


>gi|169614385|ref|XP_001800609.1| hypothetical protein SNOG_10333 [Phaeosphaeria nodorum SN15]
 gi|111061548|gb|EAT82668.1| hypothetical protein SNOG_10333 [Phaeosphaeria nodorum SN15]
          Length = 734

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 47/258 (18%), Positives = 86/258 (33%), Gaps = 17/258 (6%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLED 105
           +    +L  GPPG GKT +A+ VA E G  F   +GP I          +L       E 
Sbjct: 252 KPPRGILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEK 311

Query: 106 RD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
               ++FIDEI  ++   E+             +V +  +        S   ++AAT R 
Sbjct: 312 NSPAIIFIDEIDSIAPKREK-----TNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRP 366

Query: 164 GLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRI 221
             +   L+   RF   + +   +      I+Q   K   L    +     A         
Sbjct: 367 NSIDPALRRFGRFDREVDIGIPDPTGRLEILQIHTKNMKLGDDVDLQTIAAETHGYVGSD 426

Query: 222 AGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVG 281
              L        +    K    ++ +  +    +D +G    + R+   ++       V 
Sbjct: 427 LASLCSEAAM--QQIREKMDLIDLDEDTIDAEVLDSLGVTMENFRFALGVSNPSALREVA 484

Query: 282 IETISAGLSEPRDAIEDL 299
           +  +     E    +E++
Sbjct: 485 VVEVPNVRWEDIGGLEEV 502



 Score = 50.5 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 73/198 (36%), Gaps = 26/198 (13%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALD-----------HVLFVGPPGLGKTTLAQVV 74
             E+  G  E     +  IE+ +   +  D            VLF GPPG GKT LA+ V
Sbjct: 492 RWEDIGGLEEVK---RELIESVQYPVDHPDKFLKFGMSPSRGVLFYGPPGTGKTLLAKAV 548

Query: 75  ARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILY 126
           A E   NF S  GP +          ++  +          V+F+DE+  ++        
Sbjct: 549 ANECAANFISIKGPELLSMWFGESESNIRDIFDKARAAAPCVVFLDELDSIAKSRGGSQG 608

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
            A      D +V +  +      +     +I AT R   L N L    R    + +   +
Sbjct: 609 DA--GGASDRVVNQLLTEMDGMTSKKNVFVIGATNRPEQLDNALCRPGRLDTLVYVPLPD 666

Query: 185 IEDLKTIVQRGAKLTGLA 202
           +    +I++   + T +A
Sbjct: 667 LASRTSILKAQLRKTPVA 684


>gi|33863028|ref|NP_894588.1| cell division protein FtsH4 [Prochlorococcus marinus str. MIT 9313]
 gi|33634945|emb|CAE20931.1| cell division protein FtsH4 [Prochlorococcus marinus str. MIT 9313]
          Length = 619

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 56/249 (22%), Positives = 88/249 (35%), Gaps = 19/249 (7%)

Query: 24  PRTLEEFTGQVEACSNLK---VFIEA----AKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           P   ++  G  EA   L+    F+       K  A     VL VG PG GKT LA+ +A 
Sbjct: 159 PIRFDDVAGIKEAKEELQEVVTFLRQPESFIKLGALIPRGVLLVGAPGTGKTLLAKAIAG 218

Query: 77  ELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPA 128
           E  V F S +            A  +  L    +++   ++FIDEI  +       +   
Sbjct: 219 EADVPFFSMAASEFVELFVGVGASRVRDLFRKAKEKAPCIVFIDEIDAVGRQRGAGIGGG 278

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
            ++ +  L   +  +      + S   L+AAT R  +L   L    RF   I ++  +  
Sbjct: 279 NDEREQTL--NQLLTEMDGFADNSGVILLAATNRPDVLDAALMRPGRFDRRIEVSLPDRR 336

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             K I+   A+   LA               +      LL              I  E  
Sbjct: 337 GRKEILAVHARTRPLAEEVCLQDWARRTPGFSGADLANLLNEAAILTARQEKACIGTEQL 396

Query: 247 DAALLRLAI 255
           +AAL R+ +
Sbjct: 397 EAALERITM 405


>gi|17229735|ref|NP_486283.1| hypothetical protein all2243 [Nostoc sp. PCC 7120]
 gi|17131334|dbj|BAB73942.1| all2243 [Nostoc sp. PCC 7120]
          Length = 613

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 59/229 (25%), Positives = 87/229 (37%), Gaps = 31/229 (13%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALD--------HVLFVGPPGLGKTTLAQVVARE 77
           +L++  G  E    LK  I     R + L          VL VGPPG GKT  A+ +A E
Sbjct: 91  SLKDVGGLGEVVKELKELIAIPLKRPDLLAKLGLEPTRGVLLVGPPGTGKTLTARGLAEE 150

Query: 78  LGVNFRSTSGP-VIAK-----AGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
           LGVN+ +  GP VI+K        L  +          ++FIDEI  L+         A+
Sbjct: 151 LGVNYIALVGPEVISKYYGEAEQRLRGIFEKAAKNAPCIIFIDEIDSLAPDR-----SAV 205

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE- 186
           E      +V +  S      +     ++AAT R   L   L+   RF   ++    +++ 
Sbjct: 206 EGEVEKRLVAQLLSLMDGFSHSQGVIVLAATNRPDHLDPALRRPGRFDREVQFRVPDVKG 265

Query: 187 --DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGT-----PRIAGRLLRR 228
             D+  I+ R   L      D  A                + A   LRR
Sbjct: 266 RRDILQILTRAMPLEETVDLDAIAERSVGFVGADLKALCQKAAYTALRR 314



 Score = 49.3 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 42/161 (26%), Positives = 58/161 (36%), Gaps = 21/161 (13%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARELG 79
           ++  G       L+  +E A    E        A   +L  GPPG GKT LA+ VA +  
Sbjct: 359 DDIGGLDTIKQTLRESVEGALLYPELYLQTKALAPKGILLWGPPGTGKTLLAKAVASQAR 418

Query: 80  VNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130
            NF   +GP +             +L A     E   V+FIDEI  L+            
Sbjct: 419 ANFIGVNGPELLSRWVGASEQAVRELFAKARQAEP-CVVFIDEIDTLAPARGSFSGD--- 474

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
               D +VG+  +        S   +I AT R   L   L 
Sbjct: 475 SGVSDRVVGQLLTELDGIEVGSTILVIGATNRPDALDPALL 515


>gi|184201574|ref|YP_001855781.1| cell division protein FtsH [Kocuria rhizophila DC2201]
 gi|183581804|dbj|BAG30275.1| ATP-dependent protease FtsH [Kocuria rhizophila DC2201]
          Length = 709

 Score = 55.9 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 61/248 (24%), Positives = 96/248 (38%), Gaps = 27/248 (10%)

Query: 26  TLEEFTGQVEACSNL----KVFIEAAK---ARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  EA   L    +  +E  +     A+    VL  GPPG GKT LA+ VA E 
Sbjct: 168 TFADVAGADEAVQELDEIKQFLVEHDRFTAVGAKVPKGVLLYGPPGTGKTLLAKAVAGEA 227

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG       V   A  +  L    ++    ++F+DEI  +       +    +
Sbjct: 228 GVPFYSISGSDFVEMFVGVGASRVRDLFQQAKENAPAIIFVDEIDAVGRQRGAGMGGGND 287

Query: 131 DFQLD----LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
           + +      L+  +G  A +  I       IAAT R  +L   L    RF   I ++  +
Sbjct: 288 EREQTLNQLLVEMDGFDANTNVIL------IAATNRPDVLDPALLRPGRFDRQIGVDAPD 341

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           ++  + I++  AK   LA   + A         T      ++         +HA+ I   
Sbjct: 342 MKGREQILRVHAKNKPLAQNVDLASVAKRTPGFTGAELANVMNEAALLTARSHAQLIDDR 401

Query: 245 IADAALLR 252
             D A+ R
Sbjct: 402 AVDEAIDR 409


>gi|170062572|ref|XP_001866728.1| aaa atpase [Culex quinquefasciatus]
 gi|167880462|gb|EDS43845.1| aaa atpase [Culex quinquefasciatus]
          Length = 394

 Score = 55.9 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 48/208 (23%), Positives = 81/208 (38%), Gaps = 21/208 (10%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI-----AKAGDLAALLTNLEDR 106
           +A   VL  GPPG GKT +A+  ARE G+ F +    ++      ++  LA+ + +L  +
Sbjct: 125 QAPKGVLLYGPPGCGKTLIAKATAREAGMRFINLDVAMLTDKWYGESQKLASAVFSLAVK 184

Query: 107 ---DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV---GEGPSARSVKINLSRFTLIAAT 160
               ++FIDEI           + A    +   M+   G    + S  I      ++ AT
Sbjct: 185 IQPCIIFIDEIDSFLRARNSSDHEATAMMKTQFMMLWDGLNTESDSTVI------VMGAT 238

Query: 161 TRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPR 220
            R   L   +  R      +     +    I+Q   +   L+       E A  +R T  
Sbjct: 239 NRPQDLDKAILRRMPAQFHIGLPSEDQRLKILQLILRQEKLSRD----VEYAQLARMTNG 294

Query: 221 IAGRLLRRVRDFAEVAHAKTITREIADA 248
            +G  LR +   A V   + + RE +  
Sbjct: 295 YSGSDLREMCRNASVYRIRKVMREKSKE 322


>gi|17505831|ref|NP_492796.1| hypothetical protein C34B2.6 [Caenorhabditis elegans]
 gi|3913999|sp|O44952|LONM_CAEEL RecName: Full=Lon protease homolog, mitochondrial; Flags: Precursor
 gi|2804417|gb|AAB97538.1| Hypothetical protein C34B2.6 [Caenorhabditis elegans]
          Length = 971

 Score = 55.9 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 56/339 (16%), Positives = 114/339 (33%), Gaps = 48/339 (14%)

Query: 25  RTLEE-FTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNF 82
           + L+E   G  +    +  FI     R      +L F GPPG+GKT++A+ +A  L   +
Sbjct: 474 KALDEGHYGMKDVKERIMEFIAVNLLRKSIGGKILCFHGPPGVGKTSIAKSIATALNREY 533

Query: 83  RSTSGPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRL--------- 117
              S   +    ++                        +  ++ IDE+ ++         
Sbjct: 534 FRFSVGGMTDVAEIKGHRRTYVGAMPGKMIQCMKKVKTENPLVLIDEVDKIGGAGFHGDP 593

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           +  + E+L P                   V ++LSR   I     +  +  PL+DR  + 
Sbjct: 594 ASALLELLDPEQNANF-------NDHFLDVPVDLSRVLFICTANEISKIPGPLRDRMEMI 646

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
               +   E ++      A    +    +       + +        L++     + V +
Sbjct: 647 DVSGYLAEEKVE-----IAHQHLIPQLRKDTSLATEQLKIEDSALEELIKHYCRESGVRN 701

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAI- 296
            +     I   A L++A  +   ++   +  T I  N    P+   + +  L    + I 
Sbjct: 702 LQQHIERIFRKAALQIAEQQNEDEEPAEKATTAITENSEAEPITSTSSADCLKSSAEQIV 761

Query: 297 -------EDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
                  + +  P        + TP G ++M +AW  +G
Sbjct: 762 VCTENLQKFVGRPKFTSDRMYEVTPPG-VIMGLAWTAMG 799


>gi|304315146|ref|YP_003850293.1| ATP-dependent 26S protease, regulatory subunit related protein
           [Methanothermobacter marburgensis str. Marburg]
 gi|302588605|gb|ADL58980.1| ATP-dependent 26S protease, regulatory subunit related protein
           [Methanothermobacter marburgensis str. Marburg]
          Length = 371

 Score = 55.9 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 52/248 (20%), Positives = 92/248 (37%), Gaps = 21/248 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIE----AAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           T+++  GQ +A    ++ +       + R  A  +VLF G PG GKT LA+ +A EL V 
Sbjct: 124 TMDDVIGQEDAKIKCRIIMRYLEDPDRFRDWAPRNVLFHGSPGTGKTMLAKSLANELRVP 183

Query: 82  FRSTSGPVI--AKAGDLAALLTNLED---RD---VLFIDEIHRLSIIVEEILYPAMEDFQ 133
                   +     GD A  +  L +   +    V+FIDE+  + +              
Sbjct: 184 LYLIKATSLIGEHVGDGARQIHELYELASKTAPSVIFIDEMDAIGLDRRFQSLRGDVSEV 243

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           ++ ++ E                I AT    LL N ++ RF   I       ++ + +++
Sbjct: 244 VNALLTEMDGINQNWG----VVTIGATNNPELLDNAIRSRFEEEIEFKLPGDDERRMMLE 299

Query: 194 RGAKLTGLAVT---DEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250
           +  +   L V    D+        S     I  R+L+     A    +  + RE  + AL
Sbjct: 300 KYIETMPLDVDFSVDKLVKLTKGMSGRD--IKERVLKTALHRALADESPRVEREHIEYAL 357

Query: 251 LRLAIDKM 258
               +   
Sbjct: 358 KERDLKSE 365


>gi|258577423|ref|XP_002542893.1| ATP-dependent protease La [Uncinocarpus reesii 1704]
 gi|237903159|gb|EEP77560.1| ATP-dependent protease La [Uncinocarpus reesii 1704]
          Length = 1062

 Score = 55.9 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 50/254 (19%), Positives = 89/254 (35%), Gaps = 37/254 (14%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI   K R      +L FVGPPG+GKT++ + +AR L   +   S
Sbjct: 538 EDHYGLQDVKDRILEFIAVGKLRGSVEGKILCFVGPPGVGKTSIGKSIARALNRQYYRFS 597

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDEI ++    +        
Sbjct: 598 VGGLTDVAEIKGHRRTYVGALPGRIIQALKKCQTENPLILIDEIDKIGRGHQGDPASALL 657

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V ++LS+   +        +  PL DR    I L+ 
Sbjct: 658 ELLDPEQNSSFLD-------HYMDVPVDLSKVLFVCTANMTDTIPRPLLDRME-TIELSG 709

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  ++   I +R       A  + +  +          I   L++     + V + K   
Sbjct: 710 YVADEKMAIAER---YLAPAAKEMSGLKDVDVKLEENAI-EELIKSYCRESGVRNLKKQI 765

Query: 243 REIADAALLRLAID 256
            ++   A LR+  D
Sbjct: 766 EKVYRKAALRIIKD 779


>gi|227827584|ref|YP_002829364.1| ATPase AAA [Sulfolobus islandicus M.14.25]
 gi|227830272|ref|YP_002832052.1| AAA ATPase central domain protein [Sulfolobus islandicus L.S.2.15]
 gi|229579097|ref|YP_002837495.1| AAA ATPase central domain protein [Sulfolobus islandicus Y.G.57.14]
 gi|238619742|ref|YP_002914568.1| AAA ATPase central domain protein [Sulfolobus islandicus M.16.4]
 gi|284997695|ref|YP_003419462.1| AAA ATPase, central domain protein [Sulfolobus islandicus L.D.8.5]
 gi|227456720|gb|ACP35407.1| AAA ATPase central domain protein [Sulfolobus islandicus L.S.2.15]
 gi|227459380|gb|ACP38066.1| AAA ATPase central domain protein [Sulfolobus islandicus M.14.25]
 gi|228009811|gb|ACP45573.1| AAA ATPase central domain protein [Sulfolobus islandicus Y.G.57.14]
 gi|238380812|gb|ACR41900.1| AAA ATPase central domain protein [Sulfolobus islandicus M.16.4]
 gi|284445590|gb|ADB87092.1| AAA ATPase, central domain protein [Sulfolobus islandicus L.D.8.5]
 gi|323474636|gb|ADX85242.1| cell division protein CdvC, Vps4 like protein [Sulfolobus
           islandicus REY15A]
 gi|323477368|gb|ADX82606.1| AAA ATPase central domain protein [Sulfolobus islandicus HVE10/4]
          Length = 372

 Score = 55.9 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 65/197 (32%), Gaps = 44/197 (22%)

Query: 24  PR-TLEEFTGQVEACSNLKVFIEAAKARAEALD-----HVLFVGPPGLGKTTLAQVVARE 77
           P+ + ++  G  +    L+  I     R +         +L  GPPG GKT +A  VA E
Sbjct: 98  PKVSFKDIVGLDDVKEALREAIIYPTKRPDLFPLGWPRGILLYGPPGCGKTMIAAAVANE 157

Query: 78  LGVNFRSTSGPV------------IAKAGDLAALLTNLEDR-DVLFIDEIHRLS------ 118
           +   F                   +A    +A   +  +++  ++FIDE+  L       
Sbjct: 158 IDSIFIQLDAASVMSKWLGEAEKNVANVFKMAREESKKQNKPTIIFIDELDALLGVYSTE 217

Query: 119 -----------IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
                      +   + L    E++++ ++       R  +  L RF           + 
Sbjct: 218 VGGEARVRNQFLKEMDGLLDKSENYKVYVIGATNKPWRLDEAFLRRFQK--------RIY 269

Query: 168 NPLQDRFGIPIRLNFYE 184
            PL D         +Y 
Sbjct: 270 VPLPDYEQRLSLFKYYT 286


>gi|147797283|emb|CAN73743.1| hypothetical protein VITISV_026769 [Vitis vinifera]
          Length = 825

 Score = 55.9 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 44/218 (20%), Positives = 78/218 (35%), Gaps = 43/218 (19%)

Query: 9   SRNVSQEDADISLLRPR---------TLEEFTGQVEACSNLKVFIEAAKARAEALDH--- 56
           +  V  ++     +RP          T ++     +   +L+  +     R +       
Sbjct: 484 AAEVPPDNEFEKRIRPEVIPANEIGVTFDDIGALSDIKESLQELVMLPLRRPDLFKGGLL 543

Query: 57  -----VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLED 105
                +L  GPPG GKT LA+ +A E G +F + S   I          ++ AL T    
Sbjct: 544 KPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAK 603

Query: 106 --RDVLFIDEIH-----RLSIIVEEILYPAMEDF---QLDLMVGEGPSARSVKINLSRFT 155
               ++F+DE+      R  +   E +     +F      L+   G           R  
Sbjct: 604 VSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTKAG----------ERIL 653

Query: 156 LIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           ++AAT R   L   +  RF   I +    +E  + I++
Sbjct: 654 VLAATNRPFDLDEAIIRRFERRIMVGLPSVESREMILK 691


>gi|91200785|emb|CAJ73838.1| strongly similar to cell division protein FtsH [Candidatus Kuenenia
           stuttgartiensis]
          Length = 623

 Score = 55.9 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 57/246 (23%), Positives = 92/246 (37%), Gaps = 23/246 (9%)

Query: 26  TLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  EA   LK             K   +    VL +G PG GKT LA+ VA E 
Sbjct: 167 TFADVAGCDEAKEELKEIKDFLAYPDRFQKLGGKIPKGVLLIGSPGTGKTLLAKAVAGEA 226

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV+F S SG       V   A  +  +    +++   ++FIDEI  +       L    +
Sbjct: 227 GVHFFSISGSDFVEMFVGMGAARVRDMFEQAKEKAPCIVFIDEIDSVGRQRGAGLGGGHD 286

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E     S K       +IAAT R  +L N L    RF   I ++  ++ 
Sbjct: 287 EREQTLNQLLAEMDGFNSQKG----IIIIAATNRPDVLDNALLRPGRFDRQITIDRPDLS 342

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + ++   AK   +                T      ++      A   +  ++  E  
Sbjct: 343 GREAVLAVHAKSVKIDPDVSFKTIAKRTPGFTGADLANVINESALLAARHNKNSVGMEDL 402

Query: 247 DAALLR 252
           +AA+ R
Sbjct: 403 EAAIDR 408


>gi|300856978|ref|YP_003781962.1| putative ATP-dependent metalloprotease FtsH [Clostridium
           ljungdahlii DSM 13528]
 gi|300437093|gb|ADK16860.1| predicted ATP-dependent metalloprotease FtsH [Clostridium
           ljungdahlii DSM 13528]
          Length = 617

 Score = 55.9 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 65/287 (22%), Positives = 103/287 (35%), Gaps = 33/287 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78
              +  GQ EA  +L   ++      + +          L VGPPG GKT LA+ VA E 
Sbjct: 164 NFSDVAGQEEAKESLIEIVDFLHNSQKYVSIGAKLPKGALLVGPPGTGKTLLAKAVAGEA 223

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIV-EEILYPAM 129
            V F S SG           A  +  L    +++   ++FIDEI  +       +     
Sbjct: 224 KVPFFSISGSAFVEMFVGMGASRVRDLFKQAQEKAPCIVFIDEIDAIGKSRGGNVSGNDE 283

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ-----DRFGIPIRLNFYE 184
            +  L+ ++ E     S K       ++AAT R  +L   L      DR  I  R +   
Sbjct: 284 REQTLNQLLAEMDGFDSSKG----VVILAATNRPEVLDKALLRPGRFDRRVIVDRPDLKG 339

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            E +  +  +G K++     +  A       + TP   G  L  + + A +   K    E
Sbjct: 340 RESILKVHTKGVKVSEDVDLNSIA-------KSTPGAVGADLANMINEAALRAVKNGREE 392

Query: 245 IADAALLRLAIDKM-GFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
           +    L       M G ++ D        R      VG   ++A L 
Sbjct: 393 VIQEDLEESVEVVMAGKEKKDRILSDAEKRAVAFHEVGHALVAALLK 439


>gi|167562363|ref|ZP_02355279.1| ATP-dependent metalloprotease FtsH [Burkholderia oklahomensis
           EO147]
 gi|167574340|ref|ZP_02367214.1| ATP-dependent metalloprotease FtsH [Burkholderia oklahomensis
           C6786]
          Length = 628

 Score = 55.9 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 90/249 (36%), Gaps = 23/249 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAA-------KARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G  EA   +   ++         K        VL VGPPG GKT LA+ +A E 
Sbjct: 152 NFSDVAGCDEAKEEVSELVDFLRDPQKFQKLGGRIPRGVLLVGPPGTGKTLLARAIAGEA 211

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  +    +     ++FIDEI  +       +    +
Sbjct: 212 KVPFFSISGSDFVEMFVGVGAARVRDMFEQAKKHAPCIVFIDEIDAVGRHRGAGMGGGND 271

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  M+ E     +     S   +IAAT R  +L   L    RF   + +   +I 
Sbjct: 272 EREQTLNQMLVEMDGFEAN----SGVIVIAATNRSDVLDKALLRPGRFDRQVYVGLPDIR 327

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++   +   +A   +AA         +      L+     FA     + +  +  
Sbjct: 328 GREQIMRVHLRKVPIANDVDAAVIARGTPGFSGADLANLVNEAALFAARRGKRIVEMQDF 387

Query: 247 DAALLRLAI 255
           + A  ++ +
Sbjct: 388 EDAKDKIFM 396


>gi|163787455|ref|ZP_02181902.1| ATPase associated with various cellular activities, AAA_3
           [Flavobacteriales bacterium ALC-1]
 gi|159877343|gb|EDP71400.1| ATPase associated with various cellular activities, AAA_3
           [Flavobacteriales bacterium ALC-1]
          Length = 335

 Score = 55.9 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 47/253 (18%), Positives = 86/253 (33%), Gaps = 36/253 (14%)

Query: 30  FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTS--- 86
             GQ E    L +   A         H L  G PGL KT + + +A+ + + F+      
Sbjct: 30  IIGQEETVDQLLITFLAG-------GHALLEGVPGLAKTLMIRTLAQAIDLEFKRIQFTP 82

Query: 87  ---------GPVIAKAGDLAALLTNLEDRDVL----FIDEIHRLSIIVEEILYPAMEDFQ 133
                      ++ +               +       DEI+R     +  L  AM++F+
Sbjct: 83  DLMPSDIIGTEILEEDHSTGKKFFKFNKGPIFANIVLADEINRTPPKTQAALLEAMQEFE 142

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPL----QDRFGIPIRLNFYEIEDLK 189
           +        S  + K++   F L          T PL    QDRF   I++ + E  +  
Sbjct: 143 VTY------SGNTYKLDRPFFILATQNPIEQSGTFPLPEAQQDRFLFYIKIGYPEANEET 196

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPR---IAGRLLRRVRDFAEVAHAKTITREIA 246
            I+++   +    +    + E  +R +   R   I+  L+  V +       +T T    
Sbjct: 197 NILKKTTGVRKETLQKVISGEDILRLQHLVREVPISDDLIEFVSNVVRATRPETTTNSYV 256

Query: 247 DAALLRLAIDKMG 259
              +   A  + G
Sbjct: 257 KEWVNWGAGPRAG 269


>gi|113953212|ref|YP_730528.1| cell division protein FtsH4 [Synechococcus sp. CC9311]
 gi|113880563|gb|ABI45521.1| cell division protein FtsH4 [Synechococcus sp. CC9311]
          Length = 620

 Score = 55.9 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 53/258 (20%), Positives = 94/258 (36%), Gaps = 24/258 (9%)

Query: 20  SLLRPR-----TLEEFTGQVEACSNLK---VFIEA----AKARAEALDHVLFVGPPGLGK 67
           + +RP+       E+  G  EA   L+    F++      +  A     VL VGPPG GK
Sbjct: 145 ARIRPQDEITVRFEDVAGISEAKEELQEVVTFLKQPESFIRLGARIPRGVLLVGPPGTGK 204

Query: 68  TTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSI 119
           T LA+ +A E  V F S +            A  +  L    +++   ++FIDEI  +  
Sbjct: 205 TLLAKAIAGEAEVPFFSIAASEFVELFVGVGASRVRDLFRKAKEKSPCIIFIDEIDAVGR 264

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIP 177
                +    ++ +  L   +  +      + S   L+AAT R  +L   L    RF   
Sbjct: 265 QRGAGIGGGNDEREQTL--NQLLTEMDGFADNSGVILLAATNRADVLDTALMRPGRFDRR 322

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
           I ++  + +  + I+   A+   L+     A         +      L+           
Sbjct: 323 IHVDLPDRKGREAILAVHARSRPLSDEVSLADWALRTPGFSGADLANLINEAAILTARHE 382

Query: 238 AKTITREIADAALLRLAI 255
              +     + AL R+ +
Sbjct: 383 RSFVGSSELEIALERITM 400


>gi|120611285|ref|YP_970963.1| FtsH peptidase [Acidovorax citrulli AAC00-1]
 gi|120589749|gb|ABM33189.1| membrane protease FtsH catalytic subunit [Acidovorax citrulli
           AAC00-1]
          Length = 641

 Score = 55.9 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 53/249 (21%), Positives = 90/249 (36%), Gaps = 23/249 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAK-------ARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  EA   +K  ++  K               +L VGPPG GKT LA+ +A E 
Sbjct: 159 TFADVAGCDEAKEEVKEVVDFLKDPQKFQKLGGRIPRGLLLVGPPGTGKTLLAKSIAGEA 218

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  +  N +     ++FIDEI  +       L    +
Sbjct: 219 KVPFFSISGSDFVEMFVGVGAARVRDMFENAKKNAPCIIFIDEIDAVGRQRGAGLGGGND 278

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  M+ E     +         ++AAT R  +L   L    RF   + +   +I 
Sbjct: 279 EREQTLNQMLVEMDGFETNLG----VIVVAATNRPDILDAALLRPGRFDRQVYVTLPDIR 334

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I+    +   +     AA         +      L       A   +A+T+  +  
Sbjct: 335 GREQILNVHMRKVPVGQDVNAAVIARGTPGMSGADLANLCNEAALMAARRNARTVEMQDF 394

Query: 247 DAALLRLAI 255
           + A  ++ +
Sbjct: 395 EKAKDKIIM 403


>gi|116689319|ref|YP_834942.1| ATP-dependent metalloprotease FtsH [Burkholderia cenocepacia
           HI2424]
 gi|170732618|ref|YP_001764565.1| ATP-dependent metalloprotease FtsH [Burkholderia cenocepacia MC0-3]
 gi|116647408|gb|ABK08049.1| membrane protease FtsH catalytic subunit [Burkholderia cenocepacia
           HI2424]
 gi|169815860|gb|ACA90443.1| ATP-dependent metalloprotease FtsH [Burkholderia cenocepacia MC0-3]
          Length = 631

 Score = 55.9 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 90/249 (36%), Gaps = 23/249 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAA-------KARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G  EA   +   ++         K        VL VGPPG GKT LA+ +A E 
Sbjct: 152 NFSDVAGCDEAKEEVSELVDFLRDPQKFQKLGGRIPRGVLLVGPPGTGKTLLARAIAGEA 211

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  +    +     ++FIDEI  +       +    +
Sbjct: 212 KVPFFSISGSDFVEMFVGVGAARVRDMFEQAKKHAPCIVFIDEIDAVGRHRGAGMGGGND 271

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  M+ E     +     S   +IAAT R  +L   L    RF   + +   +I 
Sbjct: 272 EREQTLNQMLVEMDGFEAN----SGVIVIAATNRSDVLDKALLRPGRFDRQVYVGLPDIR 327

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++   +   +A   +AA         +      L+     FA     + +  +  
Sbjct: 328 GREQIMRVHLRKVPIANDVDAAVIARGTPGFSGADLANLVNEAALFAARRGKRIVEMQDF 387

Query: 247 DAALLRLAI 255
           + A  ++ +
Sbjct: 388 EDAKDKIFM 396


>gi|260576640|ref|ZP_05844627.1| ATP-dependent metalloprotease FtsH [Rhodobacter sp. SW2]
 gi|259021125|gb|EEW24434.1| ATP-dependent metalloprotease FtsH [Rhodobacter sp. SW2]
          Length = 640

 Score = 55.9 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 93/249 (37%), Gaps = 23/249 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  EA   L+  +E        ++   +     L VGPPG GKT LA+ +A E 
Sbjct: 152 TFDDVAGIDEAKEELEEIVEFLRNPQKFSRLGGKIPKGALLVGPPGTGKTLLARAIAGEA 211

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F + SG       V   A  +  +    +     ++FIDEI  +       +    +
Sbjct: 212 GVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKNAPCIVFIDEIDAVGRARGVGMGGGND 271

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E     + +       ++AAT R  +L   L    RF   I++   +I+
Sbjct: 272 EREQTLNQLLVEMDGFEANEG----VIIVAATNRKDVLDPALLRPGRFDRQIQVPNPDIK 327

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I+   A+   +    +           +      L+      A       +T +  
Sbjct: 328 GREKILTVHARKVPVGPDVDLRIIARGCPGFSGADLANLVNEAALTAARVGRSFVTMDDF 387

Query: 247 DAALLRLAI 255
           + A  ++ +
Sbjct: 388 ENAKDKVMM 396


>gi|158335444|ref|YP_001516616.1| DNA polymerase III subunits gamma and tau [Acaryochloris marina
           MBIC11017]
 gi|158305685|gb|ABW27302.1| DNA polymerase III gamma and tau subunits [Acaryochloris marina
           MBIC11017]
          Length = 688

 Score = 55.9 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 75/221 (33%), Gaps = 19/221 (8%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +      RP+   +  GQ    + L   IE  +         LF GP G GKT+ A+++A
Sbjct: 4   EPLHHKYRPQVFADLVGQDAIATTLTNAIEFERIA----PAYLFTGPRGTGKTSSARILA 59

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP-------- 127
           + L      T          +   +      DV+ ID      +     L          
Sbjct: 60  KSLNCLNSQTPTQTPCGTCSVCQEVALGTSLDVIEIDAASNTGVDNIRDLIERAQFAPVQ 119

Query: 128 -AMEDFQLDLMVGEGPSA-----RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
              + + LD +     +A     ++++    R   I ATT    +   +  R        
Sbjct: 120 CRFKIYCLDEVHMLSTAAFNALLKTLEEPPDRVVFILATTDPQRVLPTIISRCQ-RFDFR 178

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
              ++ +   +   A+   +A+T  A   IA  ++G  R A
Sbjct: 179 RIALDPMIQHLTHIAEQESIAITPTAVELIAQVAQGGLRDA 219


>gi|156548829|ref|XP_001605497.1| PREDICTED: similar to ENSANGP00000022801 [Nasonia vitripennis]
          Length = 833

 Score = 55.9 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 52/266 (19%), Positives = 87/266 (32%), Gaps = 44/266 (16%)

Query: 31  TGQVEACSNLKVFIEAAKARAEALDH--------------VLFVGPPGLGKTTLAQVVAR 76
            G  +     K   +  +     L H              +L  GPPG GKT +A+ VA 
Sbjct: 231 VGYDDIGGVRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 290

Query: 77  ELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPA 128
           E G  F   +GP I          +L       E     ++FIDE+  ++   E+     
Sbjct: 291 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAIIFIDELDAIAPKREK----- 345

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
                   +V +  +        +   ++AAT R   +   L+   RF   I +   +  
Sbjct: 346 THGEVERRIVSQLLTLMDGMKQSAHVIVMAATNRPNSIDGALRRFGRFDREIDIGIPDST 405

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
               I++   K   LA  D    EIA  + G        L               +    
Sbjct: 406 GRLEILRIHTKNMKLA-EDVELEEIAAETHGHVGADLASL--------------CSEAAL 450

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIA 272
                ++ +  +  DQ+D   L+ +A
Sbjct: 451 QQIREKMDLIDLEDDQIDAEVLSSLA 476



 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 50/255 (19%), Positives = 88/255 (34%), Gaps = 21/255 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVARE 77
           T E+  G       L+  ++      +            VLF GPPG GKT LA+ +A E
Sbjct: 505 TWEDIGGLQNVKLELQELVQYPVEHPDKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANE 564

Query: 78  LGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAM 129
              NF S  GP +     G+  A + ++ D+       VLF DE+  ++      +  A 
Sbjct: 565 CQANFISVKGPELLTMWFGESEANVRDVFDKARSAAPCVLFFDELDSIAKSRGGSVGDA- 623

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                D ++ +  +            +I AT R  ++   +    R    I +   + + 
Sbjct: 624 -GGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKS 682

Query: 188 LKTIVQRGAKLTGLAVT-DEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
            ++I +   + + +A   D               I     R  +          I RE  
Sbjct: 683 RESIFKANLRKSPVAQDVDLTYIAKVTHGFSGADITEICQRACKLAIRQCIESEIRREKE 742

Query: 247 DAALLRLAIDKMGFD 261
            A+    ++D    D
Sbjct: 743 RASNPAASMDTDEDD 757


>gi|126179507|ref|YP_001047472.1| AAA family ATPase, CDC48 subfamily protein [Methanoculleus
           marisnigri JR1]
 gi|125862301|gb|ABN57490.1| AAA family ATPase, CDC48 subfamily [Methanoculleus marisnigri JR1]
          Length = 808

 Score = 55.9 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 53/241 (21%), Positives = 81/241 (33%), Gaps = 29/241 (12%)

Query: 28  EEFTGQVEACSNLKVFIE--------AAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           E+  G  +    L   +E         A    E    +L  GPPG GKT LA+ VA E  
Sbjct: 456 EDVGGLEDVKGELAEAVEWPLKYPEIFASLETEPPRGILLFGPPGTGKTLLAKAVANESE 515

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILY-PAME 130
            NF S  GP +           +  +          ++F DEI  L       +    + 
Sbjct: 516 SNFISVKGPELLSKWVGESERGVRQVFRKARQAAPSIIFFDEIDALMPKRGSYIGSSHVT 575

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
           +  +  ++ E          L+   ++ AT R  +L   L    RF   I +   + E  
Sbjct: 576 ESVVSQILTELDGLE----ELNNVVVLGATNRPDMLDEALLRPGRFDRIIYVPPPDREGR 631

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR------VRDFAEVAHAKTIT 242
           K I +   K   +   D    E+  R+ G        L R      +R+F      KT  
Sbjct: 632 KKIFEVYLKNREILANDVDIEELVDRTEGYVGADIEALVREAKTSAMREFIAAMGGKTEE 691

Query: 243 R 243
            
Sbjct: 692 E 692



 Score = 52.0 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 8/80 (10%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLED 105
           E    VL  GPPG GKT +A+ VA E+  +F + SGP I           L  +    ++
Sbjct: 216 EPPKGVLLYGPPGTGKTLIAKAVASEVDAHFITLSGPEIMSKYYGESEERLREVFEEAQE 275

Query: 106 R--DVLFIDEIHRLSIIVEE 123
               ++FIDEI  ++   EE
Sbjct: 276 NAPSIVFIDEIDSIAPKREE 295


>gi|83718920|ref|YP_443288.1| cell division protein FtsH [Burkholderia thailandensis E264]
 gi|167582304|ref|ZP_02375178.1| cell division protein FtsH [Burkholderia thailandensis TXDOH]
 gi|167621274|ref|ZP_02389905.1| cell division protein FtsH [Burkholderia thailandensis Bt4]
 gi|257139524|ref|ZP_05587786.1| cell division protease FtsH [Burkholderia thailandensis E264]
 gi|83652745|gb|ABC36808.1| cell division protein FtsH [Burkholderia thailandensis E264]
          Length = 628

 Score = 55.9 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 90/249 (36%), Gaps = 23/249 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAA-------KARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G  EA   +   ++         K        VL VGPPG GKT LA+ +A E 
Sbjct: 152 NFSDVAGCDEAKEEVSELVDFLRDPQKFQKLGGRIPRGVLLVGPPGTGKTLLARAIAGEA 211

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  +    +     ++FIDEI  +       +    +
Sbjct: 212 KVPFFSISGSDFVEMFVGVGAARVRDMFEQAKKHAPCIVFIDEIDAVGRHRGAGMGGGND 271

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  M+ E     +     S   +IAAT R  +L   L    RF   + +   +I 
Sbjct: 272 EREQTLNQMLVEMDGFEAN----SGVIVIAATNRSDVLDKALLRPGRFDRQVYVGLPDIR 327

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++   +   +A   +AA         +      L+     FA     + +  +  
Sbjct: 328 GREQIMRVHLRKVPIANDVDAAVIARGTPGFSGADLANLVNEAALFAARRGKRIVEMQDF 387

Query: 247 DAALLRLAI 255
           + A  ++ +
Sbjct: 388 EDAKDKIFM 396


>gi|260911509|ref|ZP_05918097.1| cell division protein FtsH [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260634373|gb|EEX52475.1| cell division protein FtsH [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 669

 Score = 55.9 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 55/249 (22%), Positives = 99/249 (39%), Gaps = 28/249 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ  A   ++  ++  K+         +     L VGPPG GKT LA+ VA E 
Sbjct: 193 TFKDVAGQEGAKQEVQEIVDFLKSPQKYTDLGGKIPKGALLVGPPGTGKTLLAKAVAGEA 252

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM- 129
           GV F S SG       V   A  +  L    +++   ++FIDEI  +     +   P+M 
Sbjct: 253 GVPFFSMSGSDFVEMFVGVGASRVRDLFHQAKEKSPCIIFIDEIDAVGRARSKN--PSMG 310

Query: 130 ----EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183
                +  L+ ++ E     +     S   ++AAT R  +L + L    RF   I ++  
Sbjct: 311 GNDERENTLNALLTEMDGFGTN----SGVIILAATNRADMLDSALLRAGRFDRQISVDLP 366

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           ++ + K I Q   +   +  T +           +      +       A   +++T+ +
Sbjct: 367 DLPERKEIFQVHLRPVKVDSTVDIDFLSRQTPGFSGADIANVCNEAALIAARHNSRTVGK 426

Query: 244 EIADAALLR 252
           +    A+ R
Sbjct: 427 QDFLDAVDR 435


>gi|302902973|ref|XP_003048760.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256729694|gb|EEU43047.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 820

 Score = 55.9 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 47/217 (21%), Positives = 80/217 (36%), Gaps = 14/217 (6%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--V 108
           VLF GPPG GKT LA+ VA E   NF S  GP +          ++  +          V
Sbjct: 532 VLFYGPPGTGKTMLAKAVANECAANFISVKGPELLSMWFGESESNIRDIFDKARAAAPCV 591

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +F+DE+  ++      +  A      D +V +  +      +     +I AT R   L  
Sbjct: 592 VFLDELDSIAKARGGSMGDA--GGASDRVVNQLLTEMDGMTSKKNVFVIGATNRPEQLDP 649

Query: 169 PLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
            L    R    I +   +     +I++   + T +A   +     +     +    G + 
Sbjct: 650 ALCRPGRLDSLIYVPLPDEPGRLSIIKAQLRKTPIAADIDFGYIASKTHGFSGADLGFIT 709

Query: 227 RRVRDFA--EVAHAKTITREIADAALLRLAIDKMGFD 261
           +R    A  E   A    ++  +AA   +  D+   D
Sbjct: 710 QRAVKIAIKESITADIERQKAREAAGDEMDTDEDAED 746



 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 76/229 (33%), Gaps = 28/229 (12%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLED 105
           +    VL  GPPG GKT +A+ VA E G  F   +GP I          +L       E 
Sbjct: 253 KPPRGVLLYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEK 312

Query: 106 RD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
               ++FIDEI  ++   E+             +V +  +        S   ++AAT R 
Sbjct: 313 NSPAIIFIDEIDSIAPKREK-----TNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRP 367

Query: 164 GLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVT---DEAACEIAMRSRGT 218
             +   L+   RF   + +   +      I+Q   K   L      ++ A E        
Sbjct: 368 NSIDPALRRFGRFDREVDIGIPDPTGRLEILQIHTKNMKLGDDVDLEQIAAETHGYVGSD 427

Query: 219 PRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRY 267
                     V      A  + I  ++    L    ID    D L +  
Sbjct: 428 ----------VAALCSEAAMQQIREKMDLIDLDEDTIDAEVLDSLGVTM 466


>gi|237844855|ref|XP_002371725.1| ftsH protease, putative [Toxoplasma gondii ME49]
 gi|211969389|gb|EEB04585.1| ftsH protease, putative [Toxoplasma gondii ME49]
          Length = 902

 Score = 55.9 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 52/206 (25%), Positives = 69/206 (33%), Gaps = 15/206 (7%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA------KAGDLAALLTNLEDRD--V 108
           +L  GPPG GKT LA+ +A E GV F   SG           A  L  L          +
Sbjct: 369 ILLQGPPGTGKTLLARAIAGEAGVPFLHASGSEFEEMFVGVGASRLRQLFAEARRLSPCI 428

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           LFIDEI  L                  L+        S        TL+ AT  +  L  
Sbjct: 429 LFIDEIDALGGKRTLTENKHHRQTLNQLLTELDGFNPSDG-----VTLVCATNLLEALDP 483

Query: 169 PLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
            L    R    I + F   ++   I++  AK   LA   +      + S  T      LL
Sbjct: 484 ALTRPGRIDRIIHVPFPSKKERIEILKHYAKEMPLAADVDLEALAGLTSGMTGADLSNLL 543

Query: 227 RRVRDFAEVAHAKTITREIADAALLR 252
                 A     + +TR   D +  R
Sbjct: 544 NFAAIRAATEGKEQVTRAEVDESFDR 569


>gi|206559644|ref|YP_002230405.1| FtsH endopeptidase [Burkholderia cenocepacia J2315]
 gi|198035682|emb|CAR51569.1| FtsH endopeptidase [Burkholderia cenocepacia J2315]
          Length = 632

 Score = 55.9 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 90/249 (36%), Gaps = 23/249 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAA-------KARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G  EA   +   ++         K        VL VGPPG GKT LA+ +A E 
Sbjct: 152 NFSDVAGCDEAKEEVSELVDFLRDPQKFQKLGGRIPRGVLLVGPPGTGKTLLARAIAGEA 211

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  +    +     ++FIDEI  +       +    +
Sbjct: 212 KVPFFSISGSDFVEMFVGVGAARVRDMFEQAKKHAPCIVFIDEIDAVGRHRGAGMGGGND 271

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  M+ E     +     S   +IAAT R  +L   L    RF   + +   +I 
Sbjct: 272 EREQTLNQMLVEMDGFEAN----SGVIVIAATNRSDVLDKALLRPGRFDRQVYVGLPDIR 327

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++   +   +A   +AA         +      L+     FA     + +  +  
Sbjct: 328 GREQIMRVHLRKVPIANDVDAAVIARGTPGFSGADLANLVNEAALFAARRGKRIVEMQDF 387

Query: 247 DAALLRLAI 255
           + A  ++ +
Sbjct: 388 EDAKDKIFM 396


>gi|84468324|dbj|BAE71245.1| putative zinc dependent protease [Trifolium pratense]
          Length = 702

 Score = 55.9 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 52/253 (20%), Positives = 86/253 (33%), Gaps = 23/253 (9%)

Query: 26  TLEEFTG-----QV--EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G     Q   E    LK         A     VL VGPPG GKT LA+ +A E 
Sbjct: 238 TFDDVAGVDEAKQDFMEVVEFLKKPERFTSVGARIPKGVLLVGPPGTGKTLLAKAIAGEA 297

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG           A  +  L    ++    ++F+DEI  +       +    +
Sbjct: 298 GVPFFSISGSEFVEMFVGIGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGND 357

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E               ++AAT R  +L + L    RF   + ++  ++ 
Sbjct: 358 EREQTLNQLLTEMDGFEGNTG----VIVVAATNRADILDSALLRPGRFDRQVSVDVPDVR 413

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
               I++  A                     +      LL      A       I+ +  
Sbjct: 414 GRTEILKVHANNKKFDSDVSLEIVAMRTPGFSGADLANLLNEAAILAGRRGKSGISSKEI 473

Query: 247 DAALLRLAIDKMG 259
           D ++ R+     G
Sbjct: 474 DDSIDRIVAGMEG 486


>gi|326407768|gb|ADZ64839.1| DNA polymerase III subunit gamma/tau [Lactococcus lactis subsp.
           lactis CV56]
          Length = 552

 Score = 55.9 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 44/248 (17%), Positives = 74/248 (29%), Gaps = 55/248 (22%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     R +  +E  GQ    + LK  I         + H  LF GP G GKT+ A++ A
Sbjct: 5   ALYRKYRSQRFDEMVGQEVVATTLKNAI-----VNHQISHAYLFSGPRGTGKTSAAKIFA 59

Query: 76  RELGVNFRST------------------------SGPVIAKAGDLAALLTN----LEDRD 107
           + +    +                                   ++  +            
Sbjct: 60  KAINCPNQVDGEPCNNCFICDSITKGSLDDVIELDAASNNGVDEIREIRDKSTYAASQAT 119

Query: 108 --VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
             V  IDE+H LS      L   +E+                         + ATT +  
Sbjct: 120 YKVYIIDEVHMLSTGAFNALLKTLEEPT------------------ENVVFVLATTELQK 161

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           +   +  R       +    + ++T + +     GL    +A   IA  + G  R A  L
Sbjct: 162 IPATIISRVQRFAFKSITTGD-IRTYLAKIMADEGLEFDGKALDVIAKAAEGGMRDALSL 220

Query: 226 LRRVRDFA 233
           L +   F+
Sbjct: 221 LDQALSFS 228


>gi|331224424|ref|XP_003324884.1| ATP-dependent protease La [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
 gi|309303874|gb|EFP80465.1| ATP-dependent protease La [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
          Length = 757

 Score = 55.9 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 66/186 (35%), Gaps = 32/186 (17%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  F+   K R      +L  VGPPG+GKT++ + +AR L   F   S
Sbjct: 555 EDHYGLKDVKDRILEFLAVGKLRGTVEGKILCLVGPPGVGKTSIGKSIARALDRQFFRFS 614

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSI--------IVE 122
              +    ++                        +  ++ IDEI ++           + 
Sbjct: 615 VGGLTDVAEIKGHRRTYVGAMPGKVIQSLKKVQTENPLILIDEIDKVGKGHNGDPSSALL 674

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD  +        + INLSR   +     +  +  PL DR  +     +
Sbjct: 675 EMLDPEQNSSFLDHYI-------DIPINLSRVLFVCTANVLDTIPAPLLDRMEVLEVSGY 727

Query: 183 YEIEDL 188
              E +
Sbjct: 728 VTDEKI 733


>gi|221480992|gb|EEE19406.1| ftsH protease, putative [Toxoplasma gondii GT1]
 gi|221501714|gb|EEE27478.1| ftsH protease, putative [Toxoplasma gondii VEG]
          Length = 902

 Score = 55.9 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 52/206 (25%), Positives = 69/206 (33%), Gaps = 15/206 (7%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA------KAGDLAALLTNLEDRD--V 108
           +L  GPPG GKT LA+ +A E GV F   SG           A  L  L          +
Sbjct: 369 ILLQGPPGTGKTLLARAIAGEAGVPFLHASGSEFEEMFVGVGASRLRQLFAEARRLSPCI 428

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           LFIDEI  L                  L+        S        TL+ AT  +  L  
Sbjct: 429 LFIDEIDALGGKRTLTENKHHRQTLNQLLTELDGFNPSDG-----VTLVCATNLLEALDP 483

Query: 169 PLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
            L    R    I + F   ++   I++  AK   LA   +      + S  T      LL
Sbjct: 484 ALTRPGRIDRIIHVPFPSKKERIEILKHYAKEMPLAADVDLEALAGLTSGMTGADLSNLL 543

Query: 227 RRVRDFAEVAHAKTITREIADAALLR 252
                 A     + +TR   D +  R
Sbjct: 544 NFAAIRAATEGKEQVTRAEVDESFDR 569


>gi|242215761|ref|XP_002473693.1| predicted protein [Postia placenta Mad-698-R]
 gi|220727178|gb|EED81105.1| predicted protein [Postia placenta Mad-698-R]
          Length = 951

 Score = 55.9 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 44/190 (23%), Positives = 73/190 (38%), Gaps = 36/190 (18%)

Query: 33  QVEACS---NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPV 89
           Q +A       +V I A +        +LFVGPPG GKT+L Q +AR L   F   S   
Sbjct: 458 QEKAVGIPKQPQVHIRATRKTGVKGPILLFVGPPGTGKTSLGQSIARALNRPFGRISLGG 517

Query: 90  IAKAGDLA----------------ALLTNLEDRDVLFIDEIHRLSI---------IVEEI 124
           +    ++                 AL        V+ +DE+ +++           + E+
Sbjct: 518 VRDEAEIRGHRRTYVASGPGNIVQALRKAGRPDPVILLDEVDKIASSNFHGDPAAALLEV 577

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           L P       D  +       +V I+LS+   I     +  +  PL DR  I + L+ Y 
Sbjct: 578 LDPEQNHSFRDHYI-------NVPIDLSQILFICTANTLDTIAAPLLDRCEI-VHLSGYT 629

Query: 185 IEDLKTIVQR 194
            ++   I ++
Sbjct: 630 YDEKIHIARK 639


>gi|145340922|ref|XP_001415566.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144575789|gb|ABO93858.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 804

 Score = 55.9 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 52/260 (20%), Positives = 91/260 (35%), Gaps = 33/260 (12%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------------VLFVGPPGLGKTTLA 71
            L++  G  +     K   +  +     L H              +L  GPPG GKT +A
Sbjct: 201 RLDD-VGYDDVGGVRKQMAQIRELVELPLRHPALFKTIGVKPPKGILLYGPPGSGKTLIA 259

Query: 72  QVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEE 123
           + VA E G  F   +GP I          +L       E     ++FIDEI  ++   E+
Sbjct: 260 RAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDEIDSIAPKREK 319

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
                        +V +  +      + S   ++ AT R   +   L+ RFG   R    
Sbjct: 320 -----TNGEVERRIVSQLLTLMDGMKSRSHIIVMGATNRPNSIDPALR-RFGRFDREIDI 373

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            + D    ++   ++    +  + A ++   S+ T    G  L  +   A +   + I  
Sbjct: 374 GVPDEVGRLE-VLRIHTKNMKLDEAVDLEKISKETHGYVGADLAALSTEAAL---QCIRE 429

Query: 244 EIADAALLRLAIDKMGFDQL 263
           ++    L    ID    D +
Sbjct: 430 KMDLIDLEDENIDAAVLDSM 449



 Score = 52.0 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 44/255 (17%), Positives = 86/255 (33%), Gaps = 21/255 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVARE 77
           + ++  G       L+  ++      E            VLF GPPG GKT LA+ +A E
Sbjct: 479 SWDDIGGLEGVKQELQETVQYPVEHPEKFEKFGMAPSKGVLFYGPPGCGKTLLAKAIANE 538

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
              NF S  GP +          ++  +          VLF DE+  ++         A 
Sbjct: 539 CQANFISIKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIANQRGNSAGDAG 598

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                D ++ +  +      +     +I AT R  ++ + L    R    + +   +   
Sbjct: 599 GAG--DRVLNQLLTEMDGMGSKKTVFIIGATNRPDIIDSALMRPGRLDQLVYIPLPDEPS 656

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
             +I +   + + +A   +        +  +      + +R   +A     +        
Sbjct: 657 RLSIFKANLRKSPIAADVDLEVLAKFTNGFSGADITEICQRACKYAIRESIQRDIEAERA 716

Query: 248 AALLRLAI-DKMGFD 261
           AA+   A+ D+   D
Sbjct: 717 AAVNPDAMQDENAED 731


>gi|302829468|ref|XP_002946301.1| hypothetical protein VOLCADRAFT_78972 [Volvox carteri f.
           nagariensis]
 gi|300269116|gb|EFJ53296.1| hypothetical protein VOLCADRAFT_78972 [Volvox carteri f.
           nagariensis]
          Length = 815

 Score = 55.9 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 56/271 (20%), Positives = 90/271 (33%), Gaps = 53/271 (19%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------------VLFVGPPGLGKTTLA 71
            L+E  G  +     K   +  +     L H              +L  GPPG GKT +A
Sbjct: 197 KLDE-VGYDDIGGVRKQLAQIRELVELPLRHPQLFKTIGVKPPKGILLYGPPGSGKTLIA 255

Query: 72  QVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIV-- 121
           + VA E G  F   +GP I          +L  +    E     ++FIDE+  ++     
Sbjct: 256 RAVANETGAFFVVVNGPEIMSKLAGESESNLRKVFQEAEKNAPSIIFIDEVDSIAPKRDK 315

Query: 122 -EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPI 178
            +  +   +    L LM G    A  + I        AAT R   +   L+   RF   I
Sbjct: 316 TQGEVERRIVSQLLTLMDGLKSRAHVIVI--------AATNRPNSIDAALRRFGRFDREI 367

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVT--------DEAACEIAMRSRGTPRIAGRLLRRVR 230
            +   +      +++   K   L           D      A  +      A + +R   
Sbjct: 368 DIGVPDETGRLEVLRIHTKNMKLDEDVNLEAIARDTHGYVGADLAALCTEAALQCIREKM 427

Query: 231 DF---------AEVAHAKTITREIADAALLR 252
           D          AEV ++  +T++    AL  
Sbjct: 428 DVIDLEDEQIDAEVLNSMAVTQDHFKTALGM 458



 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 57/162 (35%), Gaps = 18/162 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVARE 77
           + +   G       L+  I+      E            VLF GPPG GKT LA+ +A E
Sbjct: 475 SWDAIGGLENVKRELQELIQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANE 534

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
              NF S  GP +          ++  +          VLF DE+  +++        A 
Sbjct: 535 CQANFISVKGPELLTMWFGESEANVREIFDKARGSAPCVLFFDELDSIAVQRGSSAGDA- 593

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
                D ++ +  +      +     +I AT R  ++   L 
Sbjct: 594 -GGAADRVLNQLLTEMDGMNSKKTVFIIGATNRPDIIDPALL 634


>gi|282878237|ref|ZP_06287033.1| ATP-dependent metallopeptidase HflB [Prevotella buccalis ATCC
           35310]
 gi|281299655|gb|EFA92028.1| ATP-dependent metallopeptidase HflB [Prevotella buccalis ATCC
           35310]
          Length = 677

 Score = 55.9 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 63/260 (24%), Positives = 105/260 (40%), Gaps = 33/260 (12%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ  A   ++  ++  K          +     L VGPPG GKT LA+ VA E 
Sbjct: 198 TFKDVAGQAGAKQEVQEIVDFLKNPQKYTDLGGKIPKGALLVGPPGTGKTLLAKAVAGEA 257

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM- 129
           GV F S SG       V   A  +  L    +++   ++FIDEI  +     +   PAM 
Sbjct: 258 GVPFFSMSGSDFVEMFVGVGASRVRDLFRQAKEKSPCIIFIDEIDAVGRARSKN--PAMG 315

Query: 130 ----EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183
                +  L+ ++ E     +     S   ++AAT R  +L N L    RF   I ++  
Sbjct: 316 GNDERENTLNALLTEMDGFGTN----SGVIILAATNRADMLDNALLRAGRFDRQISVDLP 371

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           ++ + K I     +   +A       +I   SR TP  +G  +  V + A +  A+    
Sbjct: 372 DLPERKEIFLVHLRRVKVAPD----LDIDFLSRQTPGFSGADIANVCNEAALIAARHNKT 427

Query: 244 EIADAA-LLRLAIDKMGFDQ 262
           ++     L  +     G ++
Sbjct: 428 QVGKQDFLDAVDRIVGGLEK 447


>gi|228982671|ref|ZP_04142930.1| Cell division protease FtsH [Bacillus thuringiensis Bt407]
 gi|228776854|gb|EEM25162.1| Cell division protease FtsH [Bacillus thuringiensis Bt407]
          Length = 568

 Score = 55.9 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 52/245 (21%), Positives = 87/245 (35%), Gaps = 24/245 (9%)

Query: 26  TLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           + ++  G      +LK+ +          K  A     VL  GPPG GKT +A+ +A E 
Sbjct: 134 SFKDVAGNKGVIKDLKLLVDFLKDPKRYDKLGATMPKGVLLYGPPGTGKTLIAKALAGEA 193

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  L  N       ++FIDE+  +    E     A  
Sbjct: 194 KVPFFSISGSDFIEKFVGVGASRVRDLFENARKHSPCIIFIDELDAIGGKREGA--HAEN 251

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNF-YEIED 187
              ++ ++ E     S    L    +IA T R+  L + L    RF   + +      ++
Sbjct: 252 TQTINALLSEMDGYSSANGVL----VIATTNRIESLDDALVRAGRFDKHVMVPLPQTPQE 307

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            + I++  AK    A     +         +      LL      +     + I  +  D
Sbjct: 308 REEIIEIHAKGKTFADDFSISHLAKQTLGFSGADIKSLLNEALLISIQDGKEAIDMQSID 367

Query: 248 AALLR 252
            A+ +
Sbjct: 368 KAMFK 372


>gi|282600857|ref|ZP_05979925.2| ATP-dependent metalloprotease FtsH [Subdoligranulum variabile DSM
           15176]
 gi|282571161|gb|EFB76696.1| ATP-dependent metalloprotease FtsH [Subdoligranulum variabile DSM
           15176]
          Length = 681

 Score = 55.9 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 58/248 (23%), Positives = 91/248 (36%), Gaps = 27/248 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAE------ALDH-VLFVGPPGLGKTTLAQVVA 75
           R  T  +  G  E  + L+  +E  KA  +       + H VL VGPPG GKT LA+  A
Sbjct: 184 RKATFADVAGADEEKAELQEVVEFLKAPGKFNSLGARIPHGVLLVGPPGTGKTLLARACA 243

Query: 76  RELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYP 127
            E GV F + SG       V   A  +  L    +     ++FIDEI  +       L  
Sbjct: 244 GEAGVPFYAISGSDFVEMYVGVGASRVRDLFEKAKKTMPSIVFIDEIDAVGRQRGAGLGG 303

Query: 128 AMEDFQLD----LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLN 181
             ++ +      L+  +G  A    I      ++AAT R  +L   L    RF   + + 
Sbjct: 304 GHDEREQTLNQLLVEMDGFDANDGVI------VMAATNRADILDKALLRPGRFDRQVYVG 357

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
             +++  + I++   K   L             +  +      L+      A     K I
Sbjct: 358 LPDVKGREEILKVHTKNKPLGPDVSLKTIARSTAGFSGADLENLVNEAALLAARRGKKAI 417

Query: 242 TREIADAA 249
           T    + A
Sbjct: 418 TEPEIEEA 425


>gi|115435412|ref|NP_001042464.1| Os01g0226400 [Oryza sativa Japonica Group]
 gi|56784122|dbj|BAD81507.1| unknown protein [Oryza sativa Japonica Group]
 gi|56784165|dbj|BAD81550.1| unknown protein [Oryza sativa Japonica Group]
 gi|113531995|dbj|BAF04378.1| Os01g0226400 [Oryza sativa Japonica Group]
 gi|215717126|dbj|BAG95489.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 840

 Score = 55.9 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 85/257 (33%), Gaps = 39/257 (15%)

Query: 9   SRNVSQEDADISLLRPR---------TLEEFTGQVEACSNLKVFIEAAKARAEALDH--- 56
           +  +  ++     +RP          T ++     +   +L+  +     R +       
Sbjct: 504 APEMPPDNEFEKRIRPEVIPANEIGVTFDDIGALSDIKESLQELVMLPLRRPDLFKGGLL 563

Query: 57  -----VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLED 105
                +L  GPPG GKT LA+ +A E   +F + S   I          ++ AL T    
Sbjct: 564 KPCRGILLFGPPGTGKTMLAKAIANEAQASFINVSMSTITSKWFGEDEKNVRALFTLAAK 623

Query: 106 --RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSR----FTLIAA 159
               ++F+DE+  +               ++     +          LSR      ++AA
Sbjct: 624 VSPTIIFVDEVDSML-GQRNRAGEHEAMRKI-----KNEFMTHWDGLLSRPDQKILVLAA 677

Query: 160 TTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTP 219
           T R   L   +  RF   I +    +E  + I++    L      D       + +  T 
Sbjct: 678 TNRPFDLDEAIIRRFERRIMVGLPSLESRELILR---SLLSKEKVDGGLDYKEL-ATMTE 733

Query: 220 RIAGRLLRRVRDFAEVA 236
             +G  L+ +   A   
Sbjct: 734 GYSGSDLKNLCTTAAYR 750


>gi|71405010|ref|XP_805160.1| peroxisome assembly protein [Trypanosoma cruzi strain CL Brener]
 gi|70868457|gb|EAN83309.1| peroxisome assembly protein, putative [Trypanosoma cruzi]
          Length = 873

 Score = 55.9 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 15/117 (12%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH-------VLFVGPPGLGKTTLAQ 72
           + L+P   ++  G  EA   L+  I+      E           +LF GPPG GKT LA+
Sbjct: 652 TKLQPVRWKDVGGLEEAKRELRETIQLPLLHPELFSTGTKRRAGILFYGPPGCGKTLLAK 711

Query: 73  VVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIV 121
            VA E+ +NF +  GP +          ++  L     D    ++F DE+  L+   
Sbjct: 712 AVATEMNMNFMAVKGPELINQYVGESEKNIRLLFQRARDNSPCIIFFDELDALAPAR 768


>gi|320591119|gb|EFX03558.1| cell division control protein cdc48 [Grosmannia clavigera kw1407]
          Length = 828

 Score = 55.9 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 53/256 (20%), Positives = 87/256 (33%), Gaps = 22/256 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVARE 77
             ++  G       LK  ++      E            VLF GPPG GKT LA+ VA E
Sbjct: 497 RWDDIGGLDTVKQELKESVQYPVDHPEKFLKFGMSPSRGVLFYGPPGTGKTLLAKAVANE 556

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
              NF S  GP +          ++  +          V+F+DE+  ++      +  A 
Sbjct: 557 CAANFISVKGPELLSMWFGESESNIRDIFDKARAAAPCVVFLDELDSIAKARGGSVGDA- 615

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                D +V +  +      +     +I AT R   L   L    R    I +   +   
Sbjct: 616 -GGASDRVVNQLLTEMDGMTSKKNVFVIGATNRPEQLDPALCRPGRLDSLIYVPLPDEAG 674

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA--EVAHAKTITREI 245
             +I++   + T  +   + A   +     T    G + +R    A  E   A       
Sbjct: 675 RLSILKAQLRKTPTSPDVDLAYIASKTQGFTGADLGFITQRAVKLAIKEAITADIERTRA 734

Query: 246 ADAALLRLAIDKMGFD 261
           A+AA   + +D    D
Sbjct: 735 AEAAGEDVEMDDEAED 750



 Score = 53.5 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 54/266 (20%), Positives = 86/266 (32%), Gaps = 37/266 (13%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------------VLFVGPPGLGKTTLA 71
            L E  G  +     K   +  +     L H              VL  GPPG GKT +A
Sbjct: 218 NLNE-VGYDDIGGVRKQMAQIREMVELPLRHPQLFKSIGIKPPRGVLLFGPPGTGKTLMA 276

Query: 72  QVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEE 123
           + VA E G  F   +GP I          +L       E     ++FIDEI  ++   ++
Sbjct: 277 RAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAIIFIDEIDSIAPKRDK 336

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLN 181
                        +V +  +        S   ++AAT R   +   L+   RF   + + 
Sbjct: 337 -----TNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRPNSIDPALRRFGRFDREVDIG 391

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
             +      I+Q   K   L        ++   +  T    G  L  +   A +     I
Sbjct: 392 IPDPTGRLEILQIHTKNMKLGDD----VDLEQIASETHGYVGSDLAALCSEAAMQQ---I 444

Query: 242 TREIADAALLRLAIDKMGFDQLDLRY 267
             ++    L    ID    D L +  
Sbjct: 445 REKMDLIDLDEDTIDAEVLDSLGVTM 470


>gi|300934619|ref|ZP_07149875.1| cell division protein [Corynebacterium resistens DSM 45100]
          Length = 896

 Score = 55.9 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 62/252 (24%), Positives = 95/252 (37%), Gaps = 23/252 (9%)

Query: 25  RTLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
            T ++  G  EA   L              K  A+    VL  GPPG GKT LA+ VA E
Sbjct: 166 TTFDDVAGADEAVEELDEIRDFLSDPTRYEKLGAKIPRGVLLYGPPGTGKTLLARAVAGE 225

Query: 78  LGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
            GV F + SG       V   A  +  L    ++    ++F+DEI  +       +    
Sbjct: 226 AGVPFYTISGSDFVEMFVGVGASRVRDLFQQAKENSPCIIFVDEIDAVGRQRGSGMGGGH 285

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
           ++ +  L   +         +     L+AAT R  +L   L    RF   I +   ++  
Sbjct: 286 DEREQTL--NQLLVEMDGFGDREGVILMAATNRPDILDPALLRPGRFDRQIPVTNPDLNG 343

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            + I++  AK   LA  D     +A R   T  ++G  L  V + A +  A+     I  
Sbjct: 344 REQILRVHAKGKPLA-PDVDLRSLAKR---TAGMSGADLENVLNEAALLTARVDGNVITP 399

Query: 248 AALLRLAIDKMG 259
            AL       +G
Sbjct: 400 DALEEATDRVVG 411


>gi|298675717|ref|YP_003727467.1| microtubule-severing ATPase [Methanohalobium evestigatum Z-7303]
 gi|298288705|gb|ADI74671.1| Microtubule-severing ATPase [Methanohalobium evestigatum Z-7303]
          Length = 477

 Score = 55.9 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 47/211 (22%), Positives = 74/211 (35%), Gaps = 29/211 (13%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTL----EEFTGQVEACSNLKVFIEAAKA-------RA 51
           +    ++     E      + P  L    ++  G  EA   L +     K        +A
Sbjct: 176 ESNDRIAEEKGSESEKFETISPEQLNVKFDDIGGCEEAKKELDMVAYGIKYPYVFEEYQA 235

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI---------AKAGDLAALLTN 102
           E    +L  GPPG GKT LA+ VA EL   F    G  I             ++  +  +
Sbjct: 236 EHPHGILLFGPPGTGKTLLAKAVATELETPFIHVHGSDIVSKWYGEAEQNIKEMFEISRS 295

Query: 103 LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTR 162
                +LFIDEI  ++    E  + A +     L+        S  + L     + AT R
Sbjct: 296 -RPHTILFIDEIDSITPAR-EGSHEATQRIVSTLLDEMDGIKSSDDVIL-----MGATNR 348

Query: 163 VGLLTNPLQD--RFGIPIRLNFYEIEDLKTI 191
              + +      RF   + +   + E LK I
Sbjct: 349 PESIDSAFMRPGRFDKKVHVPLPDKEALKQI 379


>gi|289662670|ref|ZP_06484251.1| cell division protein [Xanthomonas campestris pv. vasculorum
           NCPPB702]
 gi|289669633|ref|ZP_06490708.1| cell division protein [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 646

 Score = 55.9 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 52/246 (21%), Positives = 86/246 (34%), Gaps = 23/246 (9%)

Query: 26  TLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  EA   +   +       +  K   +    VL VGPPG GKT LA+ +A E 
Sbjct: 163 TFADVAGCDEAKEEVGELVDFLRDPTKFTKLGGKIPRGVLMVGPPGTGKTLLAKAIAGEA 222

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  +    +     ++FIDEI  +       L    +
Sbjct: 223 KVPFFSISGSDFVEMFVGVGASRVRDMFEQAKKHAPCIIFIDEIDAVGRHRGAGLGGGHD 282

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E       +       +IAAT R  +L   L    RF   + +   +++
Sbjct: 283 EREQTLNQLLVEMDGFEGGEG----VIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVK 338

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++   +   LA               +      L      FA     K +  +  
Sbjct: 339 GREQILRVHMRKLPLADDVVPMVIARGTPGFSGADLANLCNEAALFAARGSEKEVRMDHF 398

Query: 247 DAALLR 252
           D A  +
Sbjct: 399 DRARDK 404


>gi|255537837|ref|XP_002509985.1| Cell division protein ftsH, putative [Ricinus communis]
 gi|223549884|gb|EEF51372.1| Cell division protein ftsH, putative [Ricinus communis]
          Length = 925

 Score = 55.9 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 53/250 (21%), Positives = 87/250 (34%), Gaps = 23/250 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAK------ARAEALDH-VLFVGPPGLGKTTLAQVVAREL 78
              +  G  +A   L+  +   K             H VL  GPPG GKT +A+ +A E 
Sbjct: 413 KFSDVAGIDDAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 472

Query: 79  GVNFRSTSGPVIAKA------GDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAME 130
           GV F   +G    +         +  L    +     V+FIDEI  L+   + I   + +
Sbjct: 473 GVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKESTD 532

Query: 131 DFQLDLMVGEGPSARSVKINLSRF------TLIAATTRVGLLTNPLQD--RFGIPIRLNF 182
                       +   + I L  F        +AAT R  LL   L    RF   IR+  
Sbjct: 533 HLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRA 592

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
              +    I++  A    ++ + + +         T     +L++     A      +I 
Sbjct: 593 PNAKGRLEILKIHASKVKMSESVDLSTCAKNLPGWTGAKLAQLVQEAALVAVRQGHASII 652

Query: 243 REIADAALLR 252
           +   D A+ R
Sbjct: 653 QSDIDDAVDR 662


>gi|197301766|ref|ZP_03166836.1| hypothetical protein RUMLAC_00492 [Ruminococcus lactaris ATCC
           29176]
 gi|197299206|gb|EDY33736.1| hypothetical protein RUMLAC_00492 [Ruminococcus lactaris ATCC
           29176]
          Length = 622

 Score = 55.9 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 59/230 (25%), Positives = 88/230 (38%), Gaps = 28/230 (12%)

Query: 26  TLEEFTGQVEACSNLKV---FIEAAKARAEA----LDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G+ EA   L     F+   K   E         L VGPPG GKT LA+ VA E 
Sbjct: 167 TFNDVAGEDEAKELLTEIVDFLHNPKKYQEIGAVCPKGALLVGPPGTGKTLLAKAVAGEA 226

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG           A  +  L     ++   ++FIDEI  +    +   Y   +
Sbjct: 227 NVPFFSMSGSEFVEMFVGMGASKVRDLFKQANEKAPCIVFIDEIDTIGKKRDNAGYGGND 286

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E     + K       ++AAT R   L   L    RF   I +   +++
Sbjct: 287 EREQTLNQLLTEMDGFDASKG----VVILAATNRPDSLDPALLRPGRFDRRIPVELPDLK 342

Query: 187 DLKTIVQRGAKLTGL-AVTDEAACEIAMRSRGTPRIAGRL----LRRVRD 231
             + I++  AK   L    D  A   A        +A  +    LR VR+
Sbjct: 343 GREEILKVHAKKVRLGDDIDFNAIARAASGASGAELANMVNEAALRAVRE 392


>gi|170045739|ref|XP_001850455.1| ATP-dependent protease La [Culex quinquefasciatus]
 gi|167868665|gb|EDS32048.1| ATP-dependent protease La [Culex quinquefasciatus]
          Length = 751

 Score = 55.9 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 45/261 (17%), Positives = 92/261 (35%), Gaps = 37/261 (14%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
            +  G  +    +  FI  ++ +      +L F GPPG+GKT++A+ +AR L   +   S
Sbjct: 287 ADHYGMEDIKKRILEFIAVSQLKGTTQGKILCFHGPPGVGKTSIARSIARALNREYFRFS 346

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ ++    +        
Sbjct: 347 VGGMTDVAEIKGHRRTYVGAMPGKLIQCLKKTKTENPLVLIDEVDKIGKGYQGDPSSALL 406

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V ++LS+   I     +  +  PL+DR  + I ++ 
Sbjct: 407 ELLDPEQNVNFLD-------HYLDVPVDLSKVLFICTANVIDTIPEPLRDRMEM-IDMSG 458

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  E+   I    AK   +    +           T      L+R     + V + +   
Sbjct: 459 YVAEEKVAI----AKQYLIPQAKKDCGLEDKHITITDEALSVLIRSYCRESGVRNLQKQI 514

Query: 243 REIADAALLRLAIDKMGFDQL 263
            +I      ++   ++ F ++
Sbjct: 515 EKIVRKVTFKIVRKEIEFSEI 535


>gi|517390|emb|CAA56097.1| cdcH [Halobacterium salinarum]
          Length = 742

 Score = 55.9 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 66/289 (22%), Positives = 114/289 (39%), Gaps = 34/289 (11%)

Query: 16  DADISLLR------PR-TLEEFTGQVEACSNLKVFIE--------AAKARAEALDHVLFV 60
           + + S +R      P+ T ++  G  EA +N+K  +E          +   E    VL  
Sbjct: 443 EVEPSAMREVLVELPKITWDDVGGLTEAKNNVKESVEWPLNQPEKFTRMGVEPPAGVLLY 502

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDR------DVLFID 112
           GPPG GKT +A+ VA E   NF S  GP  +    G+    +     +       V+F D
Sbjct: 503 GPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFRKARQVAPTVIFFD 562

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+  L+    +     + +  ++ ++ E      ++       +IAAT R  ++   L  
Sbjct: 563 ELDSLAPGRGQTGGNNVSERVVNQLLTELDGLEEME----EVMVIAATNRPDIIDPALIR 618

Query: 173 --RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
             RF   +++    IE  + I++   + T LA  D +  E+A R+ G   +   L    R
Sbjct: 619 SGRFDRLVQVGQPGIEGREQILKIHTQDTPLA-ADVSLRELAERADG--YVGSDLANIAR 675

Query: 231 DFAEVAHAKTITREIADAALLRLAIDKMGFDQLDL--RYLTMIARNFGG 277
           + A  A       +    A  R A++ +     D    Y   +   F G
Sbjct: 676 EAAIEALRDDEDADDVGMAHFRAAMENVRPTITDDLMEYYDQVEDQFKG 724



 Score = 52.8 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 50/199 (25%), Positives = 72/199 (36%), Gaps = 23/199 (11%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLT 101
           K   E    VL  GPPG GKT LA+ VA E   +F S +GP I           L  +  
Sbjct: 217 KLGIEPPQGVLLHGPPGTGKTLLAKAVANETSASFFSIAGPEIISKYYGESEQQLREIFE 276

Query: 102 NLED--RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA 159
           + +D    ++FIDE+  ++   E++           L+               +  +IAA
Sbjct: 277 DAKDDSPSIIFIDELDSIAPKREDVTGEVERRVVAQLLTM-----MDGLEGRGQVIVIAA 331

Query: 160 TTRVGLLTNPLQ-----DRFGIPIRLNFYEIEDLKTIVQRGAKL-----TGLAVTDEAAC 209
           T RV  +   L+     DR       +    E++  I  RG  L           D    
Sbjct: 332 TNRVDAVDPALRRPGRFDREIEIGVPDEIGREEILKIHTRGMPLSDDVNLSTLADDTHGF 391

Query: 210 EIAMRSRGTPRIAGRLLRR 228
             A     +   A R LRR
Sbjct: 392 VGADIESLSKEAAMRALRR 410


>gi|325916041|ref|ZP_08178331.1| membrane protease FtsH catalytic subunit [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325537717|gb|EGD09423.1| membrane protease FtsH catalytic subunit [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 646

 Score = 55.9 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 52/246 (21%), Positives = 86/246 (34%), Gaps = 23/246 (9%)

Query: 26  TLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  EA   +   +       +  K   +    VL VGPPG GKT LA+ +A E 
Sbjct: 163 TFADVAGCDEAKEEVGELVDFLRDPTKFTKLGGKIPRGVLMVGPPGTGKTLLAKAIAGEA 222

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  +    +     ++FIDEI  +       L    +
Sbjct: 223 KVPFFSISGSDFVEMFVGVGASRVRDMFEQAKKHAPCIIFIDEIDAVGRHRGAGLGGGHD 282

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E       +       +IAAT R  +L   L    RF   + +   +++
Sbjct: 283 EREQTLNQLLVEMDGFEGGEG----VIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVK 338

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++   +   LA               +      L      FA     K +  +  
Sbjct: 339 GREQILRVHMRKLPLADDVVPMVIARGTPGFSGADLANLCNEAALFAARGSEKEVRMDHF 398

Query: 247 DAALLR 252
           D A  +
Sbjct: 399 DRARDK 404


>gi|225563283|gb|EEH11562.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
          Length = 608

 Score = 55.9 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 56/289 (19%), Positives = 99/289 (34%), Gaps = 44/289 (15%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           I  LRPR+L+  T   +  + LK       A++    H+L  GP G GK T  +++A   
Sbjct: 261 IEQLRPRSLDALTYHNDLSARLKSL-----AQSGDFPHLLVYGPSGAGKKT--RIIA--- 310

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRD-------------VLFIDEIHRLSIIVEEIL 125
               +   GP + K    A +     +R              +   D  +   ++V+E+L
Sbjct: 311 --TLKELFGPGVEKIKIDARIFQTTSNRKLEFNIVSSIYHLEITPSDVGNYDRVVVQELL 368

Query: 126 ----------YPAMEDFQLDLMVGEGPSARSVKINL--------SRFTLIAATTRVGLLT 167
                       A + F++ ++       R  +  L            LI        + 
Sbjct: 369 KEVAQTQQVDLSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANII 428

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
            P++ R  +       E E +  +++   K  G          IA  S    R A  +L 
Sbjct: 429 APIRSRTLLVRVAAPAEAE-ICQVLKLAVKKEGWTEAPGLNKRIAKESGRNLRRALLMLE 487

Query: 228 RVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFG 276
            +    E     T        AL+ L  D++  D+   R L + A+ + 
Sbjct: 488 AIYAQNEKVTDDTPIPPPDWEALISLIADEIMADRSPGRILQVRAKLYD 536


>gi|198416562|ref|XP_002120465.1| PREDICTED: similar to spastic paraplegia 4 (autosomal dominant;
           spastin) [Ciona intestinalis]
          Length = 430

 Score = 55.9 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 74/207 (35%), Gaps = 20/207 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDHV-------LFVGPPGLGKTTLAQVVAREL 78
             ++ TGQ  A   L+  +     R +    +       L  GPPG GKT LA+ VA E 
Sbjct: 153 KFDDVTGQHTAKQALQEIVILPALRPDLFHGLRSPAKGLLLFGPPGNGKTLLAKAVASEA 212

Query: 79  GVNFRSTSGPVIAK---------AGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
              F + S   +              L A+   ++   ++FIDEI  L    +E    + 
Sbjct: 213 KSVFFNISAATLTSKWVGEGEKMVKALFAVAREVQP-SIIFIDEIDSLLRTRQENENDST 271

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
              Q + ++              +  ++ AT R   L +    RF   I +   ++    
Sbjct: 272 RRLQTEFLLQFDG---VGSGEGDQVLVMGATNRPHELDDAALRRFPKRIYVRLPDVGTRG 328

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSR 216
            +++   K     + D    E+  R+ 
Sbjct: 329 DLIKMLLKKHDSPLGDREIKELGRRTE 355


>gi|119496141|ref|XP_001264844.1| AAA family ATPase/60S ribosome export protein Rix7, putative
           [Neosartorya fischeri NRRL 181]
 gi|119413006|gb|EAW22947.1| AAA family ATPase/60S ribosome export protein Rix7, putative
           [Neosartorya fischeri NRRL 181]
          Length = 736

 Score = 55.9 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 56/277 (20%), Positives = 91/277 (32%), Gaps = 23/277 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
           +L +  G  +   +L   +     R +            VL  GPPG GKT +A   A E
Sbjct: 170 SLADLGGLDDVIQSLGDLLILPMTRPQVFVSSNVQPPRGVLLHGPPGCGKTMIANAFAAE 229

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
           LGV F   S P I           L             ++FIDEI  ++    E     M
Sbjct: 230 LGVPFIPISAPSIVSGMSGESEKALREHFEEARRLAPCLIFIDEIDAITPKR-ESAQREM 288

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
           E   +  ++         K +     ++AAT R   L   L+   RF   I +       
Sbjct: 289 EKRIVAQLLTCMDDLALDKTDGKPVIVLAATNRPDSLDAALRRGGRFDKEINMTVPSEPV 348

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            + I+ R          D     +A R+ G        L      A +     + +  + 
Sbjct: 349 REQIL-RALTRKMRLADDLDFKTLAKRTPGFVGADLNDLVSTAGSAAIKRYLELLKSNSG 407

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIET 284
             +    +D +      ++ L  +  +    P+G ET
Sbjct: 408 EEMDIGDLDDL---SPKVKELRRLINHAKETPLGDET 441



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 45/206 (21%), Positives = 73/206 (35%), Gaps = 14/206 (6%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD--- 107
           A   VL  GPPG GKT LA+ VA E   NF S  GP +     G+    +  +  R    
Sbjct: 509 APTGVLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKFVGESERAVRQVFVRARSS 568

Query: 108 ---VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164
              ++F DE+  L    ++ L  A       L+        S +       +IAAT R  
Sbjct: 569 VPCIIFFDELDALVPRRDDALSEASARVVNTLLTELDGLGSSRQG----IYVIAATNRPD 624

Query: 165 LLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
           ++   +    R    + ++     +   I+Q   +   +   ++           +    
Sbjct: 625 IIDPAMLRPGRLETLLYVSLPNPLERVEILQTLVRKLPIEFNEDMRRLAEECEGFSGADL 684

Query: 223 GRLLRRVRDFAEVAHAKTITREIADA 248
           G LLRR    A     +    +   A
Sbjct: 685 GSLLRRAGYSAIKRRDQISFEDFVAA 710


>gi|121717057|ref|XP_001275994.1| cell division control protein Cdc48 [Aspergillus clavatus NRRL 1]
 gi|119404151|gb|EAW14568.1| cell division control protein Cdc48 [Aspergillus clavatus NRRL 1]
          Length = 819

 Score = 55.9 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 47/258 (18%), Positives = 85/258 (32%), Gaps = 17/258 (6%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLED 105
           +    +L  GPPG GKT +A+ VA E G  F   +GP I          +L       E 
Sbjct: 254 KPPRGILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEK 313

Query: 106 RD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
               ++FIDEI  ++   E+             +V +  +        S   ++AAT R 
Sbjct: 314 NSPAIIFIDEIDSIAPKREK-----TNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRP 368

Query: 164 GLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRI 221
             +   L+   RF   + +   +      I+    K   L    +     A         
Sbjct: 369 NSIDPALRRFGRFDREVDIGIPDPTGRLEILSIHTKNMKLGEDVDLETIAAETHGYVGSD 428

Query: 222 AGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVG 281
              L        +    K    ++ +  +    +D +G    + RY   ++       V 
Sbjct: 429 LASLCSEAAM--QQIREKMDMIDLDEDTIDAEVLDSLGVTMENFRYALGVSNPSALREVA 486

Query: 282 IETISAGLSEPRDAIEDL 299
           +  +     E    +E++
Sbjct: 487 VVEVPNVRWEDIGGLEEV 504



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 44/218 (20%), Positives = 83/218 (38%), Gaps = 14/218 (6%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--V 108
           VLF GPPG GKT LA+ VA E   NF S  GP +          ++  +          V
Sbjct: 533 VLFYGPPGTGKTMLAKAVANECAANFISVKGPELLSMWFGESESNIRDIFDKARAAAPCV 592

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +F+DE+  ++      +  A      D +V +  +      +     +I AT R   L  
Sbjct: 593 VFLDELDSIAKSRGGSVGDA--GGASDRVVNQLLTEMDGMTSKKNVFVIGATNRPEQLDA 650

Query: 169 PLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
            L    R    + +   +    ++I++   + T +A   +     +     +    G + 
Sbjct: 651 ALVRPGRLDTLVYVPLPDQASRESILRAQLRKTPVAPDVDIPFIASKTHGFSGADLGFVT 710

Query: 227 RRVRDFA--EVAHAKTITREIADAALLRLAIDKMGFDQ 262
           +R    A  +   A    ++  +AA   + ++  G ++
Sbjct: 711 QRAVKLAIKQSIAADIDRQKQREAAGEDVKMEDEGEEE 748


>gi|66934627|gb|AAY58902.1| putative CDC48/ATPase [Hyaloperonospora parasitica]
          Length = 804

 Score = 55.9 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 75/226 (33%), Gaps = 17/226 (7%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLED 105
           +    VL  GPPG GKT +A+ VA E G  F   +GP I          +L       E 
Sbjct: 231 KPPRGVLLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEK 290

Query: 106 R--DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
               ++FIDEI  ++   E+             +V +  +        +   +I AT R 
Sbjct: 291 NAPAIIFIDEIDSIAPKREK-----TNGEVERRIVSQLLTLMDGLKQRASVVVIGATNRP 345

Query: 164 GLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRI 221
             +   L+   RF   I +   +      I +   +   L    +   E+  R       
Sbjct: 346 NSMDPALRRFGRFDREIDIGVPDENGRLEIFRIHTRNMKLDDDVDP--ELIARDTQGFVG 403

Query: 222 AGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRY 267
           A           +    K    +I D  +    +D M   Q   +Y
Sbjct: 404 ADMAALCTEAALQCIREKMDVIDIEDETIDAEILDAMSVTQAHFKY 449



 Score = 47.4 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 74/226 (32%), Gaps = 20/226 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVARE 77
           T  +  G       L   ++      E            VLF GPPG GKT LA+ VA E
Sbjct: 470 TWRDIGGLEGVKRELLELVQYPVEHPEKFEKYGLSPSKGVLFYGPPGCGKTLLAKAVANE 529

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
              NF S  GP +          ++  +          VLF DE+  ++         A 
Sbjct: 530 CQANFISIKGPELLTMWFGESEANVREVFDKARGAAPCVLFFDELDSIAQQRGSSSGDAG 589

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                D ++ +  +            +I AT R  ++   L    R    I +   + + 
Sbjct: 590 GAG--DRVMNQLLTEMDGMGAKKNVFIIGATNRPDIIDPALMRPGRLDQLIFIPMPDFDS 647

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
             +I++   + + ++   +         + +      + +R    A
Sbjct: 648 RLSILRSVLRKSPVSKDVDLNFLAQQTDKFSGADLTEICQRAAKLA 693


>gi|222424701|dbj|BAH20304.1| AT2G30950 [Arabidopsis thaliana]
          Length = 586

 Score = 55.9 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 55/274 (20%), Positives = 98/274 (35%), Gaps = 23/274 (8%)

Query: 26  TLEEFTG-----QV--EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G     Q   E    LK         A+    VL +GPPG GKT LA+ +A E 
Sbjct: 116 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAVGAKIPKGVLLIGPPGTGKTLLAKAIAGEA 175

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG           A  +  L    ++    ++F+DEI  +       +    +
Sbjct: 176 GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGND 235

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E               ++AAT R  +L + L    RF   + ++  +++
Sbjct: 236 EREQTLNQLLTEMDGFEGNTG----VIVVAATNRADILDSALLRPGRFDRQVSVDVPDVK 291

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
               I++  A                     +      LL      A      +I+ +  
Sbjct: 292 GRTDILKVHAGNKKFDNDVSLEIIAMRTPGFSGADLANLLNEAAILAGRRARTSISSKEI 351

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV 280
           D ++ R+     G    D +  +++A +  G  V
Sbjct: 352 DDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAV 385


>gi|189219923|ref|YP_001940563.1| ATP-dependent Zn protease FtsH [Methylacidiphilum infernorum V4]
 gi|310943095|sp|B3DY14|FTSH2_METI4 RecName: Full=ATP-dependent zinc metalloprotease FtsH 2
 gi|189186781|gb|ACD83966.1| ATP-dependent Zn protease FtsH [Methylacidiphilum infernorum V4]
          Length = 641

 Score = 55.9 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 54/248 (21%), Positives = 91/248 (36%), Gaps = 23/248 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAK-------ARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  EA   ++  +E  K               VL VGPPG GKT LA+ +A E 
Sbjct: 151 TFKDVAGVEEAKEEVQELVEFLKDPKKFQKLGGRIPKGVLMVGPPGTGKTLLAKAIAGEA 210

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  +          ++FIDEI  +       L    +
Sbjct: 211 DVPFFSISGSDFVEMFVGVGASRVRDMFEQARRHAPCIVFIDEIDAVGRARGTGLGGGHD 270

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E     S +       +IAAT R  +L   L    RF   +R+N  +I 
Sbjct: 271 EREQTLNALLVEMDGIESQEG----VIVIAATNRKDVLDPALLRPGRFDREVRVNLPDIR 326

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++  A+   L+   + +         +      L+      A       + +   
Sbjct: 327 GREQILRVHAQKIKLSKNADLSALARGTPGFSGAELANLINEAALIAAKKGKDNVDQPDL 386

Query: 247 DAALLRLA 254
           + A  ++ 
Sbjct: 387 EEARDKVR 394


>gi|170579214|ref|XP_001894730.1| ATPase, AAA family protein [Brugia malayi]
 gi|158598563|gb|EDP36432.1| ATPase, AAA family protein [Brugia malayi]
          Length = 700

 Score = 55.9 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 42/263 (15%), Positives = 90/263 (34%), Gaps = 35/263 (13%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLAALLTNLED 105
           +  ++    +L  GPPG  KT +A+ +A +  +NF +  GP +     G+    +  L  
Sbjct: 463 RFASKPPSGILLYGPPGCSKTLIARAIASQSRMNFLAVKGPELFSKWVGESERAVRELFR 522

Query: 106 R------DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA 159
           R       ++F DEI  +     +     + +  L  ++ E               ++AA
Sbjct: 523 RARQVAPAIIFFDEIDAVGANRGDRNESHVGERVLTQLLTELDGLE----EKGDVMVLAA 578

Query: 160 TTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRG 217
           T R   L + L    RF + I +   + E    I++       + +  +           
Sbjct: 579 TNRPDRLDSALLRPGRFNLTIHVPLPDEETRLEILRIRLNQMQVTIDLD----------- 627

Query: 218 TPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGG 277
                  + +R   F+     +   + + +A L     +++ F         ++ R    
Sbjct: 628 ----VEDISKRTEGFSGAEVVELCDQAVREALLENRDANRLEFRHFHQALKEIMPRT--- 680

Query: 278 GPVGIETISAGLSEPRDAIEDLI 300
            P  +  I          + D++
Sbjct: 681 -PNWLLNIYKEFK--SGVVPDVM 700


>gi|254252701|ref|ZP_04946019.1| Peptidase M41 [Burkholderia dolosa AUO158]
 gi|124895310|gb|EAY69190.1| Peptidase M41 [Burkholderia dolosa AUO158]
          Length = 628

 Score = 55.9 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 90/249 (36%), Gaps = 23/249 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAA-------KARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G  EA   +   ++         K        VL VGPPG GKT LA+ +A E 
Sbjct: 148 NFSDVAGCDEAKEEVSELVDFLRDPQKFQKLGGRIPRGVLLVGPPGTGKTLLARAIAGEA 207

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  +    +     ++FIDEI  +       +    +
Sbjct: 208 KVPFFSISGSDFVEMFVGVGAARVRDMFEQAKKHAPCIVFIDEIDAVGRHRGAGMGGGND 267

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  M+ E     +     S   +IAAT R  +L   L    RF   + +   +I 
Sbjct: 268 EREQTLNQMLVEMDGFEAN----SGVIVIAATNRSDVLDKALLRPGRFDRQVYVGLPDIR 323

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++   +   +A   +AA         +      L+     FA     + +  +  
Sbjct: 324 GREQIMRVHLRKVPIANDVDAAVIARGTPGFSGADLANLVNEAALFAARRGKRIVEMQDF 383

Query: 247 DAALLRLAI 255
           + A  ++ +
Sbjct: 384 EDAKDKIFM 392


>gi|15614926|ref|NP_243229.1| stage V sporulation protein K [Bacillus halodurans C-125]
 gi|10174983|dbj|BAB06082.1| stage V sporulation protein K [Bacillus halodurans C-125]
          Length = 315

 Score = 55.9 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 47/217 (21%), Positives = 81/217 (37%), Gaps = 33/217 (15%)

Query: 2   MDREGLL-SRNVSQEDADISLLRPRTLEEFTGQVEACSNLK-----VFI------EAAKA 49
           M+ E    S    ++   +  +  R L+++ G  E    +K     ++I      +  +A
Sbjct: 25  MEEETFFHSEEEREKHYVLEKME-RELKKYVGLDEVKRLIKEVYAWIYINQCRTEQGLRA 83

Query: 50  RAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA-------------KAGDL 96
             +AL H++F G PG GKTT+A+++AR        + G +I               A   
Sbjct: 84  SKQAL-HMIFKGNPGTGKTTVARLIARFFRDMNVLSKGQLIEAERADLVGEYIGHTAQKT 142

Query: 97  AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTL 156
             L+   +   VLF+DE + L+   E+       D  +  M  +      +    S    
Sbjct: 143 RELIKKAQGG-VLFVDEAYSLARGGEKDFGKEAIDTLVKAMEDQQHEFVLILAGYS---- 197

Query: 157 IAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
                    L   L  RF I +    Y  + L  IV+
Sbjct: 198 -DEMDYFLSLNPGLPSRFPIAMDFPNYTTDQLMQIVK 233


>gi|291546955|emb|CBL20063.1| ATP-dependent metalloprotease FtsH [Ruminococcus sp. SR1/5]
          Length = 712

 Score = 55.9 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 57/276 (20%), Positives = 105/276 (38%), Gaps = 28/276 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEA-------LDHVLFVGPPGLGKTTLAQVVAREL 78
           + ++  GQ EA  +L+  ++      +            L VGPPG GKT LA+ VA E 
Sbjct: 183 SFKDVAGQDEAKESLQEVVDFLHNPGKYTAIGAKLPKGALLVGPPGTGKTLLAKAVAGEA 242

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG           A  +  L    +     ++FIDEI  +    +       +
Sbjct: 243 QVPFFSLSGSEFVEMFVGVGASRVRDLFEEAKKNAPCIVFIDEIDAIGKSRDSRYGGGND 302

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E     + K  L    ++AAT R  +L   L    RF   + ++  +++
Sbjct: 303 EREQTLNQLLAEMDGFDTSKGLL----ILAATNRPEVLDPALLRPGRFDRRVIVDRPDLK 358

Query: 187 DLKTIVQRGAK-LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
               I++  AK +      D  A  +A        +A  ++      A     K ++++ 
Sbjct: 359 GRVDILKVHAKNVLLDDTVDFEAIALATSGAVGSDLAN-MINEAAILAVKKGRKAVSQKD 417

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVG 281
            + ++  + +   G ++ D        R      VG
Sbjct: 418 LEESVEVVLV---GKEKKDRILSKQERRIVSYHEVG 450


>gi|146422054|ref|XP_001486969.1| hypothetical protein PGUG_00346 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 1182

 Score = 55.9 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 48/260 (18%), Positives = 94/260 (36%), Gaps = 36/260 (13%)

Query: 32  GQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           G  +    +  FI   K   +    +L   GPPG GKT++A+ +A  L   +   +   I
Sbjct: 618 GLKDVKDRILEFISIGKVSGKVDGKILCLAGPPGTGKTSIARSIAEALDRKYVRIAMGGI 677

Query: 91  AKAGDLAALLTNLED----------------RDVLFIDEIHRLSIIV--------EEILY 126
               ++                           ++ IDEI +L +           EIL 
Sbjct: 678 QDVHEVKGHRRTYVGSIPGRIIFALKQAKTSNPLMLIDEIDKLDLSRGGGAASAFLEILD 737

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           P   +  +D  +        VK++LS+   +     +G +  PL+DR  I I ++ Y   
Sbjct: 738 PEQNNSFVDNYI-------DVKVDLSKVLFVCTANYLGNIPAPLRDRMEI-IDVSGYTNN 789

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +   I +R           +A  +       T  I+  + +  R+       K I R  +
Sbjct: 790 EKIEIAKRH---LIPDAAKKAGLDPRHVKIPTETISRLIEKYCRESGLRNVKKFINRIYS 846

Query: 247 DAALLRLAIDKMGFDQLDLR 266
            A++  +   ++  +++  +
Sbjct: 847 KASMKIVEDIELREEEVSAK 866


>gi|221066110|ref|ZP_03542215.1| ATP-dependent metalloprotease FtsH [Comamonas testosteroni KF-1]
 gi|220711133|gb|EED66501.1| ATP-dependent metalloprotease FtsH [Comamonas testosteroni KF-1]
          Length = 640

 Score = 55.9 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 51/249 (20%), Positives = 89/249 (35%), Gaps = 23/249 (9%)

Query: 26  TLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  EA   +K  +       +  K        +L VGPPG GKT LA+ +A E 
Sbjct: 159 TFADVAGADEAKEEVKEVVDFLKDPNKFQKLGGRIPRGLLLVGPPGTGKTLLAKSIAGEA 218

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  +  N +     ++FIDEI  +       +    +
Sbjct: 219 KVPFFSISGSDFVEMFVGVGAARVRDMFENAKKNAPCIIFIDEIDAVGRQRGAGMGGGND 278

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  M+ E     +         ++AAT R  +L   L    RF   + +   +I 
Sbjct: 279 EREQTLNQMLVEMDGFETNLG----VIVVAATNRPDILDAALLRPGRFDRQVYVTLPDIR 334

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I+    +   +      A         +      L       A   +A+T+  +  
Sbjct: 335 GREQILNVHMRKIPVGQDVNPAIIARGTPGMSGADLANLCNEAALMAARRNARTVEMQDF 394

Query: 247 DAALLRLAI 255
           + A  ++ +
Sbjct: 395 EKAKDKIIM 403


>gi|32470950|ref|NP_863943.1| regulatory protein [Rhodopirellula baltica SH 1]
 gi|32443095|emb|CAD71617.1| probable regulatory protein [Rhodopirellula baltica SH 1]
          Length = 368

 Score = 55.9 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 41/207 (19%), Positives = 65/207 (31%), Gaps = 25/207 (12%)

Query: 30  FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPV 89
             GQ E    L +       R     H +  G PGL KT +   +A    ++FR      
Sbjct: 57  IVGQEEVAEQLLI---GILCRG----HCILQGMPGLAKTMMVSTLASLTDLSFRRVQFTP 109

Query: 90  IAKAGDLAALLTNLEDRD----------------VLFIDEIHRLSIIVEEILYPAMEDFQ 133
               GD+       ED                  V+  DEI+R     +  L  AM++ Q
Sbjct: 110 DLMPGDITGTEVLEEDHTTGKRIFRFVEGPLFGNVILADEINRTPPKTQSALLEAMQEHQ 169

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           L  + G+          L+       T     L     DRF + I + +   ++ + I +
Sbjct: 170 LT-VCGKTYKLPDPFFVLAT-QNPVETEGTYPLPEAQLDRFLLKIHVRYPTRDEEREIAR 227

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPR 220
           R               E   + +   R
Sbjct: 228 RQTTDYSFETKTVLDVEQISQMQSLVR 254


>gi|15790615|ref|NP_280439.1| cell division cycle protein [Halobacterium sp. NRC-1]
 gi|169236353|ref|YP_001689553.1| AAA-type ATPase (transitional ATPase homolog) [Halobacterium
           salinarum R1]
 gi|12229754|sp|Q9HPF0|CDCH_HALSA RecName: Full=Protein CdcH
 gi|10581137|gb|AAG19919.1| cell division cycle protein [Halobacterium sp. NRC-1]
 gi|167727419|emb|CAP14207.1| AAA-type ATPase (transitional ATPase homolog) [Halobacterium
           salinarum R1]
          Length = 742

 Score = 55.9 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 66/289 (22%), Positives = 114/289 (39%), Gaps = 34/289 (11%)

Query: 16  DADISLLR------PR-TLEEFTGQVEACSNLKVFIE--------AAKARAEALDHVLFV 60
           + + S +R      P+ T ++  G  EA +N+K  +E          +   E    VL  
Sbjct: 443 EVEPSAMREVLVELPKITWDDVGGLTEAKNNVKESVEWPLNQPEKFTRMGVEPPAGVLLY 502

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDR------DVLFID 112
           GPPG GKT +A+ VA E   NF S  GP  +    G+    +     +       V+F D
Sbjct: 503 GPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFRKARQVAPTVIFFD 562

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+  L+    +     + +  ++ ++ E      ++       +IAAT R  ++   L  
Sbjct: 563 ELDSLAPGRGQTGGNNVSERVVNQLLTELDGLEEME----EVMVIAATNRPDIIDPALIR 618

Query: 173 --RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
             RF   +++    IE  + I++   + T LA  D +  E+A R+ G   +   L    R
Sbjct: 619 SGRFDRLVQVGQPGIEGREQILKIHTQDTPLA-ADVSLRELAERADG--YVGSDLANIAR 675

Query: 231 DFAEVAHAKTITREIADAALLRLAIDKMGFDQLDL--RYLTMIARNFGG 277
           + A  A       +    A  R A++ +     D    Y   +   F G
Sbjct: 676 EAAIEALRDDEDADDVGMAHFRAAMENVRPTITDDLMEYYDQVEDQFKG 724



 Score = 52.8 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 50/199 (25%), Positives = 72/199 (36%), Gaps = 23/199 (11%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLT 101
           K   E    VL  GPPG GKT LA+ VA E   +F S +GP I           L  +  
Sbjct: 217 KLGIEPPQGVLLHGPPGTGKTLLAKAVANETSASFFSIAGPEIISKYYGESEQQLREIFE 276

Query: 102 NLED--RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA 159
           + +D    ++FIDE+  ++   E++           L+               +  +IAA
Sbjct: 277 DAKDDSPSIIFIDELDSIAPKREDVTGEVERRVVAQLLTM-----MDGLEGRGQVIVIAA 331

Query: 160 TTRVGLLTNPLQ-----DRFGIPIRLNFYEIEDLKTIVQRGAKL-----TGLAVTDEAAC 209
           T RV  +   L+     DR       +    E++  I  RG  L           D    
Sbjct: 332 TNRVDAVDPALRRPGRFDREIEIGVPDEIGREEILKIHTRGMPLSDDVNLSTLADDTHGF 391

Query: 210 EIAMRSRGTPRIAGRLLRR 228
             A     +   A R LRR
Sbjct: 392 VGADIESLSKEAAMRALRR 410


>gi|169768094|ref|XP_001818518.1| hypothetical protein AOR_1_2826174 [Aspergillus oryzae RIB40]
 gi|238485043|ref|XP_002373760.1| AAA family ATPase/60S ribosome export protein Rix7, putative
           [Aspergillus flavus NRRL3357]
 gi|83766373|dbj|BAE56516.1| unnamed protein product [Aspergillus oryzae]
 gi|220701810|gb|EED58148.1| AAA family ATPase/60S ribosome export protein Rix7, putative
           [Aspergillus flavus NRRL3357]
          Length = 735

 Score = 55.9 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 57/274 (20%), Positives = 91/274 (33%), Gaps = 23/274 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
           +L +  G  +    L   +     R +            VL  GPPG GKT +A   A E
Sbjct: 169 SLTDLGGLDDVVQELGDLVILPMTRPQVYMSSNVQPPRGVLLHGPPGCGKTMIANAFAAE 228

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAM 129
           LGV F S S P I           L       +     ++FIDEI  ++    E     M
Sbjct: 229 LGVPFISISAPSIVSGMSGESEKALREYFEEAKRIAPCLIFIDEIDAITPKR-ESAQREM 287

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
           E   +  ++         K +     ++AAT R   L   L+   RF   I +       
Sbjct: 288 EKRIVAQLLTCMDDLALEKTDGKPVIVLAATNRPDSLDAALRRGGRFDKEINMTVPSEPV 347

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            + I+ R          D     +A R+ G        L      A +     I +  + 
Sbjct: 348 REQIL-RALTRKMRLADDIDFKYLANRTAGFVGADLNDLVSTAGSAAIKRYLEILKANSG 406

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVG 281
             +    I++ G     ++ L  +  +    P+G
Sbjct: 407 EEMD---IEEAGDLSPKVKELRRLITHAKETPIG 437



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 54/236 (22%), Positives = 87/236 (36%), Gaps = 20/236 (8%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD--- 107
           A   VL  GPPG GKT LA+ VA E   NF S  GP +     G+    +  +  R    
Sbjct: 508 APTGVLLWGPPGCGKTLLAKAVANESHANFISVKGPELLNKYVGESERAVRQVFVRARSS 567

Query: 108 ---VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164
              V+F DE+  L    ++ +  A       L+        + +       +IAAT R  
Sbjct: 568 VPCVIFFDELDALVPRRDDTVSEASARVVNTLLTELDGLGSNRQG----IYIIAATNRPD 623

Query: 165 LLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
           ++   +    R    + +N     +   I++   +   +   D+           +    
Sbjct: 624 IIDPAMLRPGRLETLLFVNLPSPLERAEILRTLVRNIPVDFNDDLRRLAEDCEGFSGADL 683

Query: 223 GRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
           G LLRR   +A +    TI  E   AA   +          DL+    + R++ GG
Sbjct: 684 GSLLRRA-GYAAIKRRDTIKHEDFVAAKAFIRP-----SVTDLKKYEKLRRDWSGG 733


>gi|88802631|ref|ZP_01118158.1| ATP-dependent protease [Polaribacter irgensii 23-P]
 gi|88781489|gb|EAR12667.1| ATP-dependent protease [Polaribacter irgensii 23-P]
          Length = 817

 Score = 55.9 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 49/208 (23%), Positives = 80/208 (38%), Gaps = 41/208 (19%)

Query: 27  LEEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRST 85
           LEE   +     +L V     K R +    ++   GPPG+GKT+L + VA  LG  +   
Sbjct: 362 LEEV--KDRIIEHLAVL----KLRGDMKSPIICLYGPPGVGKTSLGKSVAEALGRKYVRM 415

Query: 86  SGPVIAKAGDLA------------ALLTNLED----RDVLFIDEIHRLSIIVE------- 122
           S   +    ++              L+ NL+       V  +DEI +L    +       
Sbjct: 416 SLGGLRDEAEIRGHRKTYIGAMPGRLIQNLKKSGTSNPVFVLDEIDKLGQSNQGDPSSAM 475

Query: 123 -EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
            E+L P   +   D  +  G        +LS+   IA    +G +   L+DR  I I ++
Sbjct: 476 LEVLDPEQNESFYDNYLEVGY-------DLSKVLFIATANNLGQIPWALRDRMEI-INVS 527

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAAC 209
            Y IE+   I +R   L    + +    
Sbjct: 528 GYTIEEKTEIGKR--HLLPKQLKEHGLT 553


>gi|115351227|ref|YP_773066.1| ATP-dependent metalloprotease FtsH [Burkholderia ambifaria AMMD]
 gi|172060241|ref|YP_001807893.1| ATP-dependent metalloprotease FtsH [Burkholderia ambifaria MC40-6]
 gi|115281215|gb|ABI86732.1| membrane protease FtsH catalytic subunit [Burkholderia ambifaria
           AMMD]
 gi|171992758|gb|ACB63677.1| ATP-dependent metalloprotease FtsH [Burkholderia ambifaria MC40-6]
          Length = 631

 Score = 55.9 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 90/249 (36%), Gaps = 23/249 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAA-------KARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G  EA   +   ++         K        VL VGPPG GKT LA+ +A E 
Sbjct: 152 NFSDVAGCDEAKEEVSELVDFLRDPQKFQKLGGRIPRGVLLVGPPGTGKTLLARAIAGEA 211

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  +    +     ++FIDEI  +       +    +
Sbjct: 212 KVPFFSISGSDFVEMFVGVGAARVRDMFEQAKKHAPCIVFIDEIDAVGRHRGAGMGGGND 271

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  M+ E     +     S   +IAAT R  +L   L    RF   + +   +I 
Sbjct: 272 EREQTLNQMLVEMDGFEAN----SGVIVIAATNRSDVLDKALLRPGRFDRQVYVGLPDIR 327

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++   +   +A   +AA         +      L+     FA     + +  +  
Sbjct: 328 GREQIMRVHLRKVPIANDVDAAVIARGTPGFSGADLANLVNEAALFAARRGKRIVEMQDF 387

Query: 247 DAALLRLAI 255
           + A  ++ +
Sbjct: 388 EDAKDKIFM 396


>gi|317010938|gb|ADU84685.1| DNA polymerase III subunits gamma and tau [Helicobacter pylori
           SouthAfrica7]
          Length = 594

 Score = 55.9 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 77/256 (30%), Gaps = 59/256 (23%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA------- 75
           RP+   E  GQ      L + ++  +         LF G  G GKT+ +++ A       
Sbjct: 9   RPKHFSELVGQESVAKTLSLALDNQRLANAY----LFSGLRGSGKTSSSRIFARALMCEK 64

Query: 76  -----------------RELGVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFID 112
                                ++     G       D+  L+             +  ID
Sbjct: 65  GPKAVPCDTCAQCQSALNNHHIDIIEMDGASNRGIDDVRNLIEQTRYKPSFGRYKIFIID 124

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H  +      L   +E+                    S    + ATT    L   +  
Sbjct: 125 EVHMFTTEAFNALLKTLEE------------------PPSHVKFLLATTDALKLPATILS 166

Query: 173 R---FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           R   F          I  LKTI++       +     A  ++A   +G+ R    LL + 
Sbjct: 167 RTQHFRFKKIPENSVISHLKTILE----KEQVHYEASALEKLAHSGQGSLRDTLTLLEQA 222

Query: 230 RDFAEVAHAKTITREI 245
            ++ + A  ++   E+
Sbjct: 223 INYCDNAITESKVAEM 238


>gi|261839461|gb|ACX99226.1| DNA polymerase III subunits gamma and tau [Helicobacter pylori 52]
          Length = 568

 Score = 55.9 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 78/256 (30%), Gaps = 59/256 (23%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA------- 75
           RP+   E  GQ      L + ++  +         LF G  G GKT+ +++ A       
Sbjct: 9   RPKHFSELVGQESVAKTLSLALDNQRLANAY----LFSGLRGSGKTSSSRIFARALMCEE 64

Query: 76  -----------------RELGVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFID 112
                                ++     G       D+  L+             +  ID
Sbjct: 65  GPKAVPCDTCTQCQSALNNHHIDIIEMDGASNRGIDDVRNLIEQTRYKPSFGRYKIFIID 124

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H  +      L   +E+                    S    + ATT    L   +  
Sbjct: 125 EVHMFTTEAFNALLKTLEE------------------PPSHVKFLLATTDALKLPATILS 166

Query: 173 R---FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           R   F          I  LKTI++       ++    A  ++A   +G+ R    LL + 
Sbjct: 167 RTQHFRFKKIPENSVISHLKTILE----KEQVSYETSALEKLAHSGQGSLRDTITLLEQA 222

Query: 230 RDFAEVAHAKTITREI 245
            ++ + A  ++   E+
Sbjct: 223 INYCDNAITESKVAEM 238


>gi|257463125|ref|ZP_05627526.1| DNA polymerase III subunits gamma and tau [Fusobacterium sp. D12]
 gi|317060721|ref|ZP_07925206.1| DNA polymerase III gamma and tau [Fusobacterium sp. D12]
 gi|313686397|gb|EFS23232.1| DNA polymerase III gamma and tau [Fusobacterium sp. D12]
          Length = 468

 Score = 55.9 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 45/241 (18%), Positives = 79/241 (32%), Gaps = 54/241 (22%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
              RP + +E  G+ E    LK  ++  +         LF GP G+GKTT+A+++A+ + 
Sbjct: 7   RKYRPSSFQEVAGEQEIVRALKNALKNNQLSQAY----LFTGPRGVGKTTIARLIAKSVN 62

Query: 80  V-------------------------NFRSTSGPVIAKAGDLAALLTNL------EDRDV 108
                                     +             ++  L   +        + V
Sbjct: 63  CLEPKEDGEACGVCENCTSFQEGSFLDLVEIDAASNRGIDEIRLLKEKINYQPSQGKKKV 122

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
             IDE+H L+      L   +E+          P A  + I         ATT    +  
Sbjct: 123 YIIDEVHMLTKEAFNALLKTLEE----------PPAHVIFIL--------ATTEPDKILP 164

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            +  R           ++D+   +Q       L + +E    I   S G+ R A  +L R
Sbjct: 165 TIISRCQ-RYDFKTLSLQDMGNQLQYILSRENLEMEEEVKELIYEASGGSMRDAISVLER 223

Query: 229 V 229
           +
Sbjct: 224 L 224


>gi|224121826|ref|XP_002318682.1| predicted protein [Populus trichocarpa]
 gi|222859355|gb|EEE96902.1| predicted protein [Populus trichocarpa]
          Length = 799

 Score = 55.9 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 44/255 (17%), Positives = 83/255 (32%), Gaps = 25/255 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVARE 77
           + E+  G       L+  ++      E            VLF GPPG GKT LA+ +A E
Sbjct: 470 SWEDIGGLENIKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANE 529

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
              NF S  GP +          ++  +          VLF DE+  ++         A 
Sbjct: 530 CQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGNSSGDA- 588

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                D ++ +  +            +I AT R  ++   L    R    I +   +   
Sbjct: 589 -GGAADRVLNQLLTEMDGMTAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEAS 647

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH-----AKTIT 242
              I +   + + ++   + A         +      + +R   +A   +      K   
Sbjct: 648 RLQIFKACLRKSPVSRDVDLAALARYTHGFSGADITEICQRACKYAIRENIEKDIEKEKR 707

Query: 243 REIADAALLRLAIDK 257
           ++    A+    +D+
Sbjct: 708 KQDNPEAMEEDDVDE 722



 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 63/167 (37%), Gaps = 28/167 (16%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHV--------LFVGPPGLGKTTLAQVVARELG 79
           ++  G  +  + ++  +E      +    +        L  GPPG GKT +A+ VA E G
Sbjct: 199 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG 258

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPA--- 128
             F   +GP I          +L       E     ++FIDE+  ++   E+        
Sbjct: 259 AFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERR 318

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
           +    L LM G    A  +        ++ AT R   +   L+ RFG
Sbjct: 319 IVSQLLTLMDGLKSRAHVI--------VMGATNRPNSIDPALR-RFG 356


>gi|170697952|ref|ZP_02889035.1| ATP-dependent metalloprotease FtsH [Burkholderia ambifaria
           IOP40-10]
 gi|170137118|gb|EDT05363.1| ATP-dependent metalloprotease FtsH [Burkholderia ambifaria
           IOP40-10]
          Length = 631

 Score = 55.9 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 90/249 (36%), Gaps = 23/249 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAA-------KARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G  EA   +   ++         K        VL VGPPG GKT LA+ +A E 
Sbjct: 152 NFSDVAGCDEAKEEVSELVDFLRDPQKFQKLGGRIPRGVLLVGPPGTGKTLLARAIAGEA 211

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  +    +     ++FIDEI  +       +    +
Sbjct: 212 KVPFFSISGSDFVEMFVGVGAARVRDMFEQAKKHAPCIVFIDEIDAVGRHRGAGMGGGND 271

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  M+ E     +     S   +IAAT R  +L   L    RF   + +   +I 
Sbjct: 272 EREQTLNQMLVEMDGFEAN----SGVIVIAATNRSDVLDKALLRPGRFDRQVYVGLPDIR 327

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++   +   +A   +AA         +      L+     FA     + +  +  
Sbjct: 328 GREQIMRVHLRKVPIANDVDAAVIARGTPGFSGADLANLVNEAALFAARRGKRIVEMQDF 387

Query: 247 DAALLRLAI 255
           + A  ++ +
Sbjct: 388 EDAKDKIFM 396


>gi|187929108|ref|YP_001899595.1| ATP-dependent metalloprotease FtsH [Ralstonia pickettii 12J]
 gi|187725998|gb|ACD27163.1| ATP-dependent metalloprotease FtsH [Ralstonia pickettii 12J]
          Length = 628

 Score = 55.9 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 85/220 (38%), Gaps = 16/220 (7%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLT 101
           K        VL VGPPG GKT LA+ +A E  V F S SG       V   A  +  +  
Sbjct: 181 KLGGRIPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEMFVGVGAARVRDMFE 240

Query: 102 NLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDL--MVGEGPSARSVKINLSRFTLI 157
           N + +   ++FIDEI  +       +    ++ +  L  M+ E     +     S   +I
Sbjct: 241 NAKKQAPCIVFIDEIDAVGRHRGAGMGGGNDEREQTLNQMLVEMDGFEAN----SGVIVI 296

Query: 158 AATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRS 215
           AAT R  +L   L    RF   + +   +I   + I++   +   +    +A+       
Sbjct: 297 AATNRADVLDKALLRPGRFDRQVYVGLPDIRGREQILKVHMRKVPIGNDVDASVLARGTP 356

Query: 216 RGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255
             +      L+     FA   + + +  +  + A  ++ +
Sbjct: 357 GFSGADLANLVNEAALFAARRNKRVVDMQDFEDAKDKIYM 396


>gi|109947487|ref|YP_664715.1| DNA polymerase III subunits gamma and tau [Helicobacter acinonychis
           str. Sheeba]
 gi|109714708|emb|CAJ99716.1| DNA polymerase III subunits gamma and tau [Helicobacter acinonychis
           str. Sheeba]
          Length = 576

 Score = 55.9 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 78/256 (30%), Gaps = 59/256 (23%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA------- 75
           RP+   E  GQ      L + ++  +         LF G  G GKT+ +++ A       
Sbjct: 9   RPKHFSELVGQESVAKTLSLALDNQRLANAY----LFSGLRGSGKTSSSRIFARALMCEA 64

Query: 76  -----------------RELGVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFID 112
                                ++     G       D+  L+             +  ID
Sbjct: 65  GPKAMPCDTCIQCQSALNNHHIDIIEMDGASNRGIDDVRNLIEQTRYKPSFGRYKIFIID 124

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H  +      L   +E+                    S    + ATT    L   +  
Sbjct: 125 EVHMFTTEAFNALLKTLEE------------------PPSHVKFLLATTDALKLPTTILS 166

Query: 173 R---FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           R   F          I  LKTI++       +   + A  ++A   +G+ R    LL + 
Sbjct: 167 RTQHFRFKKIPENSVISHLKTILE----KEQVYYEESALEKLAHSGQGSLRDTLTLLEQA 222

Query: 230 RDFAEVAHAKTITREI 245
            ++ + A  ++   E+
Sbjct: 223 INYCDNAITESKVAEM 238


>gi|253742198|gb|EES99044.1| Katanin [Giardia intestinalis ATCC 50581]
          Length = 506

 Score = 55.9 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 53/244 (21%), Positives = 82/244 (33%), Gaps = 37/244 (15%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALD-----------HVLFVGPPGLGKTTLAQVV 74
           T ++  G        K  +E A      L             VL  GPPG GKT LA+ +
Sbjct: 211 TFDQIAG----LREAKRLLEEAVVLPMLLPDFFTGVRSPWRGVLLFGPPGTGKTLLAKAI 266

Query: 75  ARELGVNFRSTSGPVIAKA------GDLAALLTNLEDR--DVLFIDEIHRL--------- 117
           A + G  F + S  VI           +  L T    R    +FIDEI  +         
Sbjct: 267 AMQAGFTFFAASASVIESKYRGEAEKMVRGLFTIARARAPSCIFIDEIDAIMSARGSGED 326

Query: 118 ---SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRF 174
              S  ++  +   M+       VG G +  S +        +AAT     L   L+ R 
Sbjct: 327 NECSRRIKAEILTQMQGVTTANGVGNGANEDSSEQQPKPVMTLAATNLPWDLDEALKRRL 386

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
              I +   + E  K +++    L  +   +    ++A R  G       +L R    A 
Sbjct: 387 EKRIYIPLPDFESRKQLLE--LNLKDITTVELDFDDLANRLEGFSGADISILVREVSMAP 444

Query: 235 VAHA 238
           +   
Sbjct: 445 LRRE 448


>gi|269120918|ref|YP_003309095.1| ATP-dependent protease La [Sebaldella termitidis ATCC 33386]
 gi|268614796|gb|ACZ09164.1| ATP-dependent protease La [Sebaldella termitidis ATCC 33386]
          Length = 769

 Score = 55.9 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 44/186 (23%), Positives = 72/186 (38%), Gaps = 32/186 (17%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  E    +  F+   K        ++  VGPPG+GKT+LA  VAR +   F   S
Sbjct: 317 EDHYGLEEVKERILEFLAVKKLNNNLKGSIICLVGPPGVGKTSLAHSVARAMDRKFVRIS 376

Query: 87  GPVIAKAGDLA------------ALLTNLED----RDVLFIDEIHRL--------SIIVE 122
              +    ++              +++ L+       V+  DEI ++        S  + 
Sbjct: 377 LGGVRDEAEIRGHRRTYIGSMPGRIISALKQIGVNNPVMLFDEIDKMASDFRGDPSSAML 436

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L PA  +   D  V           +LS+   I     +G +  PL+DR  I    ++
Sbjct: 437 EVLDPAQNNTFEDHYVDA-------PFDLSKVFFITTANDLGGIPGPLRDRMEIIYIESY 489

Query: 183 YEIEDL 188
            E E L
Sbjct: 490 TEFEKL 495


>gi|154499205|ref|ZP_02037583.1| hypothetical protein BACCAP_03200 [Bacteroides capillosus ATCC
           29799]
 gi|150272045|gb|EDM99271.1| hypothetical protein BACCAP_03200 [Bacteroides capillosus ATCC
           29799]
          Length = 381

 Score = 55.9 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 77/229 (33%), Gaps = 48/229 (20%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFR 83
           P + ++  G          F+    ++      ++F G  GLGK++ A+++A EL     
Sbjct: 5   PTSFDDIVGHKNLIE----FLRDHLSKGTLPQFIIFEGDEGLGKSSFAKLLALELMGRDP 60

Query: 84  STSGPVIAK--------------------AGDLAALLT---NLEDRDVLFIDEIHRLSII 120
                VI +                    A ++ A L+   +  DR V+ +DE H +S  
Sbjct: 61  QVLKRVIQENKSTESVLLYNMSINGGKDTAKEVEANLSLGLSGLDRKVIILDEAHDMSEA 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            +E    + E                         L   TT    L   L+ R    + L
Sbjct: 121 AQETFLVSTE------------------YLPKGVYLFMCTTDSLNLKATLKSR-AFTLHL 161

Query: 181 NFYEIEDLKTIVQRGAKL--TGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
                 D+ +++ R  +     L         IA  + G PRIA  L+ 
Sbjct: 162 QHLTQADMVSLLTRYVRDRGLRLQAEASTIQMIAAWADGKPRIALNLIE 210


>gi|121715792|ref|XP_001275505.1| DNA replication factor C subunit Rfc5, putative [Aspergillus
           clavatus NRRL 1]
 gi|119403662|gb|EAW14079.1| DNA replication factor C subunit Rfc5, putative [Aspergillus
           clavatus NRRL 1]
          Length = 352

 Score = 55.9 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 55/289 (19%), Positives = 101/289 (34%), Gaps = 44/289 (15%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +  LRPR+L+  +   E  + LK       A++    H+L  GP G GK T  +V+A   
Sbjct: 5   VDRLRPRSLDALSYHHELSARLKSL-----AQSGDFPHLLMYGPSGAGKKT--RVIA--- 54

Query: 79  GVNFRSTSGPVIAKAGDLAALLTNLEDRD-------------VLFIDEIHRLSIIVEEIL 125
               +   GP + K    A +     +R              +   D  +   ++V+E+L
Sbjct: 55  --TLKELYGPGVEKIKIDARVFQTTSNRKLEFNIVSSVYHLEITPSDVGNYDRVVVQELL 112

Query: 126 ----------YPAMEDFQLDLMVGEGPSARSVKINL--------SRFTLIAATTRVGLLT 167
                       A + F++ ++      +R  +  L            LI        + 
Sbjct: 113 KEVAQTQQVDLSAKQRFKVVVINEADHLSRDAQAALRRTMEKYSPNLRLILLANSTSNII 172

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
            P++ R  + +R+     E +  +++   K  G          IA  S    R A  +  
Sbjct: 173 APIRSR-TLLVRVAAPTEEQICEVLENAGKKEGWPEAPGLNQRIAKESERNLRRALLMFE 231

Query: 228 RVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFG 276
            +    E     T        AL+ L  D++  ++   R L + AR + 
Sbjct: 232 AIYAQTEKVTDNTPIPPPDWEALISLIADEILAERSPARLLQVRARLYD 280


>gi|15674176|ref|NP_268351.1| DNA polymerase III subunits gamma and tau [Lactococcus lactis
           subsp. lactis Il1403]
 gi|12725258|gb|AAK06292.1|AE006448_10 DNA polymerase III, subunits beta and tau [Lactococcus lactis
           subsp. lactis Il1403]
          Length = 552

 Score = 55.9 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 44/248 (17%), Positives = 74/248 (29%), Gaps = 55/248 (22%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     R +  +E  GQ    + LK  I         + H  LF GP G GKT+ A++ A
Sbjct: 5   ALYRKYRSQRFDEMVGQEVVATTLKNAI-----VNHQISHAYLFSGPRGTGKTSAAKIFA 59

Query: 76  RELGVNFRST------------------------SGPVIAKAGDLAALLTN----LEDRD 107
           + +    +                                   ++  +            
Sbjct: 60  KAINCPNQVDGEPCNNCFICDSITKGSLDDVIELDAASNNGVDEIREIRDKSTYAASQAT 119

Query: 108 --VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
             V  IDE+H LS      L   +E+                         + ATT +  
Sbjct: 120 YKVYIIDEVHMLSTGAFNALLKTLEEPT------------------ENVVFVLATTELQK 161

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           +   +  R       +    + ++T + +     GL    +A   IA  + G  R A  L
Sbjct: 162 IPATIISRVQRFAFKSITTGD-IRTYLAKIMADEGLEFDGKALDVIAKAAEGGMRDALSL 220

Query: 226 LRRVRDFA 233
           L +   F+
Sbjct: 221 LDQALSFS 228


>gi|71027455|ref|XP_763371.1| vacuolar sorting protein 4 [Theileria parva strain Muguga]
 gi|68350324|gb|EAN31088.1| vacuolar sorting protein 4, putative [Theileria parva]
          Length = 362

 Score = 55.9 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 64/183 (34%), Gaps = 21/183 (11%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARELG 79
           ++  G       LK  I                    +L  GPPG GKT LA  ++ E  
Sbjct: 87  DDIVGHDSVKIILKESILLPMKFPNLFSSKNIINYNCILLYGPPGTGKTHLANALSNEFK 146

Query: 80  VNFRSTSGPVIAKA--GDLAALLTNLEDRDVL------FIDEIHRLSIIVEEILYPAMED 131
            +F S S   I     G+    + NL +  ++      FIDEI  +        + A   
Sbjct: 147 YHFLSISSSNILSKYYGESERYIRNLFNFCIMKSPCVLFIDEIDSICNTRNSNQHEATNR 206

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
            + + M+     +    + L     + +T    LL N +  RF   I +      +   +
Sbjct: 207 IKTEFMIQINRLSNEGNVLL-----LGSTNLPWLLDNAIIRRFEKRIYIPLPNQNNRFDL 261

Query: 192 VQR 194
           +++
Sbjct: 262 IKK 264


>gi|188575912|ref|YP_001912841.1| cell division protease FtsH [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188520364|gb|ACD58309.1| cell division protease FtsH [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 646

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 52/246 (21%), Positives = 86/246 (34%), Gaps = 23/246 (9%)

Query: 26  TLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  EA   +   +       +  K   +    VL VGPPG GKT LA+ +A E 
Sbjct: 163 TFADVAGCDEAKEEVGELVDFLRDPTKFTKLGGKIPRGVLMVGPPGTGKTLLAKAIAGEA 222

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  +    +     ++FIDEI  +       L    +
Sbjct: 223 KVPFFSISGSDFVEMFVGVGASRVRDMFEQAKKHAPCIIFIDEIDAVGRHRGAGLGGGHD 282

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E       +       +IAAT R  +L   L    RF   + +   +++
Sbjct: 283 EREQTLNQLLVEMDGFEGGEG----VIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVK 338

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++   +   LA               +      L      FA     K +  +  
Sbjct: 339 GREQILRVHMRKLPLADDVVPMVIARGTPGFSGADLANLCNEAALFAARGSEKEVRMDHF 398

Query: 247 DAALLR 252
           D A  +
Sbjct: 399 DRARDK 404


>gi|312131588|ref|YP_003998928.1| ATP-dependent protease la [Leadbetterella byssophila DSM 17132]
 gi|311908134|gb|ADQ18575.1| ATP-dependent protease La [Leadbetterella byssophila DSM 17132]
          Length = 820

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 80/198 (40%), Gaps = 34/198 (17%)

Query: 25  RTLE-EFTGQVEACSNLKVFIEAAKARAE-ALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           R L+ +  G  +    +  ++   K R +     +   GPPG+GKT+L + +A+ LG  +
Sbjct: 347 RILDSDHFGLEKVKERILEYLAVLKLRNDMKAPLLCLYGPPGVGKTSLGKSIAKALGRKY 406

Query: 83  RSTSGPVIAKAGDLA------------ALLTNLED----RDVLFIDEIHRLSI------- 119
              +   +    ++              ++ N++       V  +DEI ++S        
Sbjct: 407 VRMALGGLHDEAEIRGHRKTYIGAMPGKIIQNIQKAGSSNPVFVLDEIDKISRDHRGDPS 466

Query: 120 -IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
             + E+L P   +   D  +        V+ +LS+   IA    +  +   L+DR  I I
Sbjct: 467 SALLEVLDPEQNNAFKDNYLE-------VEYDLSKVMFIATANSLDTIQPALRDRMEI-I 518

Query: 179 RLNFYEIEDLKTIVQRGA 196
            L+ Y +E+   I +R  
Sbjct: 519 ELSGYTVEEKVEIAKRHL 536


>gi|295698516|ref|YP_003603171.1| DNA polymerase III, subunits gamma and tau [Candidatus Riesia
           pediculicola USDA]
 gi|291157152|gb|ADD79597.1| DNA polymerase III, subunits gamma and tau [Candidatus Riesia
           pediculicola USDA]
          Length = 377

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 61/185 (32%), Gaps = 37/185 (20%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN- 81
           RP + +E +GQ     +    I    ++ +     LF G  G GKTT+A++ ++ +    
Sbjct: 11  RPISFKEISGQQHVVKS----ISNCLSKGKLHHSYLFSGSHGTGKTTIARIFSKGMSCKL 66

Query: 82  -----------------------FRSTSGPVIAKAGDLAALLTNLE------DRDVLFID 112
                                           +K   +  +L NL+         +  ID
Sbjct: 67  GVTDQPCNKCENCIEINHGSFVDLVEIDAASQSKIEHMKEILDNLQYLPTKGKFKIFLID 126

Query: 113 EIHRLSIIVEEILYPAMED--FQLDLMVGEGPSARSVKINLSRFTLIAATTRVG-LLTNP 169
           E+H LS      L   +E+    +  ++      +     +SR             ++  
Sbjct: 127 EVHMLSRYSFNALLKKLEEPPRHIKFLLATTNPEKLPSTIVSRCLHFKLDALSEKEISKR 186

Query: 170 LQDRF 174
           L++ F
Sbjct: 187 LEEVF 191


>gi|264679343|ref|YP_003279250.1| ATP-dependent metalloprotease FtsH [Comamonas testosteroni CNB-2]
 gi|299532302|ref|ZP_07045695.1| ATP-dependent metalloprotease FtsH [Comamonas testosteroni S44]
 gi|262209856|gb|ACY33954.1| ATP-dependent metalloprotease FtsH [Comamonas testosteroni CNB-2]
 gi|298719710|gb|EFI60674.1| ATP-dependent metalloprotease FtsH [Comamonas testosteroni S44]
          Length = 640

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 51/249 (20%), Positives = 89/249 (35%), Gaps = 23/249 (9%)

Query: 26  TLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  EA   +K  +       +  K        +L VGPPG GKT LA+ +A E 
Sbjct: 159 TFADVAGADEAKEEVKEVVDFLKDPNKFQKLGGRIPRGLLLVGPPGTGKTLLAKSIAGEA 218

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  +  N +     ++FIDEI  +       +    +
Sbjct: 219 KVPFFSISGSDFVEMFVGVGAARVRDMFENAKKNAPCIIFIDEIDAVGRQRGAGMGGGND 278

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  M+ E     +         ++AAT R  +L   L    RF   + +   +I 
Sbjct: 279 EREQTLNQMLVEMDGFETNLG----VIVVAATNRPDILDAALLRPGRFDRQVYVTLPDIR 334

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I+    +   +      A         +      L       A   +A+T+  +  
Sbjct: 335 GREQILNVHMRKIPVGQDVNPAIIARGTPGMSGADLANLCNEAALMAARRNARTVEMQDF 394

Query: 247 DAALLRLAI 255
           + A  ++ +
Sbjct: 395 EKAKDKIIM 403


>gi|260587222|ref|ZP_05853135.1| cell division protein FtsH [Blautia hansenii DSM 20583]
 gi|260542417|gb|EEX22986.1| cell division protein FtsH [Blautia hansenii DSM 20583]
          Length = 638

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 58/274 (21%), Positives = 105/274 (38%), Gaps = 25/274 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEA-------LDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ EA  +L+  ++      +            L VGPPG GKT LA+ VA E 
Sbjct: 178 TFKDVAGQDEAKESLQEVVDFLHNPGKYTAIGAKLPKGALLVGPPGTGKTLLAKAVAGEA 237

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  L    +     ++FIDE+  +    +       E
Sbjct: 238 HVPFFSLSGSDFVEMFVGVGASRVRDLFEEAKKNAPCIIFIDEVDAIGKSRDSRFGGNDE 297

Query: 131 -DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            +  L+ ++ E     + K  L    ++AAT R  +L   L    RF   + ++  +++ 
Sbjct: 298 REQTLNQLLAEMDGFDTSKGLL----ILAATNRPEVLDPALLRPGRFDRRVIVDRPDLKG 353

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
             +I++  AK   +++ +    E    +  +  +   L   V + A +A           
Sbjct: 354 RISILKVHAK--NVSLDETVDLEGIALAT-SGAVGSDLANMVNEAAILAVKNGRQAVSQK 410

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVG 281
             L  + +  +G ++ D        +      VG
Sbjct: 411 DLLEAVEVVLVGKEKKDRILSKEERKIVSYHEVG 444


>gi|210076057|ref|XP_505704.2| YALI0F21329p [Yarrowia lipolytica]
 gi|199424971|emb|CAG78513.2| YALI0F21329p [Yarrowia lipolytica]
          Length = 845

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 72/222 (32%), Gaps = 20/222 (9%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLE--DRDV 108
           VL  GPPG GKT LA  +A +  V F S S P +           +  +          +
Sbjct: 245 VLLHGPPGCGKTVLANAIANKAQVPFMSISAPSVVSGMSGESEKKIREIFEEARAIAPCL 304

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           LFIDEI  ++   E      ME   +  ++         K +     ++ AT R   +  
Sbjct: 305 LFIDEIDAVTPKREGG-GRGMETRIVAQLLTCIDDLNPEKNDFRPVIVLGATNRPDAIDP 363

Query: 169 PLQ-----DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMR------SRG 217
            L+     D        +    E +   + R  KL      +  A            +  
Sbjct: 364 ALRRPGRFDEEIAMAVPDRKSRELILKAITRPLKLNDDIDFELLAMRTPGYVAADLKALV 423

Query: 218 TPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259
           T   +  L R  +   E   A   T +  +      ++D  G
Sbjct: 424 TAAGSMALERAFKQLVENKEAGQETSDKIEEIKDTDSMDVEG 465



 Score = 46.6 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 8/80 (10%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD-- 107
           +A   VL  GPPG GKT LA+ VA E   NF S  GP +     G+    +  + +R   
Sbjct: 600 DAPGGVLLWGPPGCGKTLLAKAVASETAANFISVRGPELLNKYVGESERAIRQVFERAAL 659

Query: 108 ----VLFIDEIHRLSIIVEE 123
               ++F DE   L+   ++
Sbjct: 660 SSPCIIFFDEFDSLAPRRDD 679


>gi|107022372|ref|YP_620699.1| ATP-dependent metalloprotease FtsH [Burkholderia cenocepacia AU
           1054]
 gi|254245759|ref|ZP_04939080.1| Peptidase M41 [Burkholderia cenocepacia PC184]
 gi|105892561|gb|ABF75726.1| membrane protease FtsH catalytic subunit [Burkholderia cenocepacia
           AU 1054]
 gi|124870535|gb|EAY62251.1| Peptidase M41 [Burkholderia cenocepacia PC184]
          Length = 627

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 90/249 (36%), Gaps = 23/249 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAA-------KARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G  EA   +   ++         K        VL VGPPG GKT LA+ +A E 
Sbjct: 148 NFSDVAGCDEAKEEVSELVDFLRDPQKFQKLGGRIPRGVLLVGPPGTGKTLLARAIAGEA 207

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  +    +     ++FIDEI  +       +    +
Sbjct: 208 KVPFFSISGSDFVEMFVGVGAARVRDMFEQAKKHAPCIVFIDEIDAVGRHRGAGMGGGND 267

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  M+ E     +     S   +IAAT R  +L   L    RF   + +   +I 
Sbjct: 268 EREQTLNQMLVEMDGFEAN----SGVIVIAATNRSDVLDKALLRPGRFDRQVYVGLPDIR 323

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++   +   +A   +AA         +      L+     FA     + +  +  
Sbjct: 324 GREQIMRVHLRKVPIANDVDAAVIARGTPGFSGADLANLVNEAALFAARRGKRIVEMQDF 383

Query: 247 DAALLRLAI 255
           + A  ++ +
Sbjct: 384 EDAKDKIFM 392


>gi|331083543|ref|ZP_08332654.1| hypothetical protein HMPREF0992_01578 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330403754|gb|EGG83306.1| hypothetical protein HMPREF0992_01578 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 636

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 60/274 (21%), Positives = 103/274 (37%), Gaps = 25/274 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEA-------LDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ EA  +L+  ++      +            L VGPPG GKT LA+ VA E 
Sbjct: 176 TFKDVAGQDEAKESLQEVVDFLHNPGKYTAIGAKLPKGALLVGPPGTGKTLLAKAVAGEA 235

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  L    +     ++FIDE+  +    +       E
Sbjct: 236 HVPFFSLSGSDFVEMFVGVGASRVRDLFEEAKKNAPCIIFIDEVDAIGKSRDSRFGGNDE 295

Query: 131 -DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            +  L+ ++ E     + K  L    ++AAT R  +L   L    RF   + ++  +++ 
Sbjct: 296 REQTLNQLLAEMDGFDTSKGLL----ILAATNRPEVLDPALLRPGRFDRRVIVDRPDLKG 351

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
             +I++  AK   L   DE      +    +  +   L   V + A +A           
Sbjct: 352 RISILKVHAKNVSL---DETIDLEGIALATSGAVGSDLANMVNEAAILAVKNGRQAVSQK 408

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVG 281
             L  + +  +G ++ D        +      VG
Sbjct: 409 DLLEAVEVVLVGKEKKDRILSKEERKIVSYHEVG 442


>gi|323451834|gb|EGB07710.1| hypothetical protein AURANDRAFT_59087 [Aureococcus anophagefferens]
          Length = 313

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 66/207 (31%), Gaps = 24/207 (11%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-----GVNF 82
            +  G  E  S L+     A      + +++  GPPG GKTT    +ARE+         
Sbjct: 13  SDVVGNEETISKLR-----AVVAGGNMPNIILSGPPGTGKTTSMLCLAREMLGANYKEAV 67

Query: 83  RSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGP 142
              +         +   +     + V      H+L I+ E            D M     
Sbjct: 68  LEMNASDERGIMVVRDKIKMFAKKKVNLPPGAHKLVILDEA-----------DSMTAAAQ 116

Query: 143 SARSVKINLSRFT--LIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
            A    + L   T     A      ++ P+Q R  I       + E LK  +       G
Sbjct: 117 QAMRRTMELFSGTTRFALACNTSSKISEPIQSRCAILRFTRLSDKELLKR-LTHVCGAEG 175

Query: 201 LAVTDEAACEIAMRSRGTPRIAGRLLR 227
           +A TD     +   + G  R A   L+
Sbjct: 176 VAATDGGLEALIFTAEGDMRNALNNLQ 202


>gi|257784645|ref|YP_003179862.1| ATP-dependent metalloprotease FtsH [Atopobium parvulum DSM 20469]
 gi|310943118|sp|C8W731|FTSH_ATOPD RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|257473152|gb|ACV51271.1| ATP-dependent metalloprotease FtsH [Atopobium parvulum DSM 20469]
          Length = 644

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 55/243 (22%), Positives = 98/243 (40%), Gaps = 26/243 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ EA  +++  +   K         A      L VGPPG GKT +A+ VA E 
Sbjct: 182 TFKDVAGQEEAKESMQEIVSFLKTPDKYKEIGARCPRGALLVGPPGTGKTLIAKAVAGEA 241

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F   +G           A  +  L     ++   ++FIDEI  +    +  L    E
Sbjct: 242 GVPFFQIAGSEFVEMFVGRGAAKVRDLFKQANEKAPCIIFIDEIDAVGKRRDASLNSNDE 301

Query: 131 -DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            +  L+ ++ E     + K       ++AAT R   L   L    RF   I +   +++ 
Sbjct: 302 REQTLNQLLSEMDGFDNHKG----IVVLAATNRPETLDKALLRPGRFDRRIPVELPDLKG 357

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            + ++Q    +    V  E   ++++ ++ TP  +G  L  + + A +   +   R +  
Sbjct: 358 REAVLQ----IHANDVKMEPGVDLSIVAKSTPGASGADLANIINEAALRAVRFGRRRVTT 413

Query: 248 AAL 250
             L
Sbjct: 414 EDL 416


>gi|241663316|ref|YP_002981676.1| ATP-dependent metalloprotease FtsH [Ralstonia pickettii 12D]
 gi|309782469|ref|ZP_07677193.1| ATP-dependent metalloprotease FtsH [Ralstonia sp. 5_7_47FAA]
 gi|240865343|gb|ACS63004.1| ATP-dependent metalloprotease FtsH [Ralstonia pickettii 12D]
 gi|308918806|gb|EFP64479.1| ATP-dependent metalloprotease FtsH [Ralstonia sp. 5_7_47FAA]
          Length = 628

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 85/220 (38%), Gaps = 16/220 (7%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLT 101
           K        VL VGPPG GKT LA+ +A E  V F S SG       V   A  +  +  
Sbjct: 181 KLGGRIPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEMFVGVGAARVRDMFE 240

Query: 102 NLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDL--MVGEGPSARSVKINLSRFTLI 157
           N + +   ++FIDEI  +       +    ++ +  L  M+ E     +     S   +I
Sbjct: 241 NAKKQAPCIVFIDEIDAVGRHRGAGMGGGNDEREQTLNQMLVEMDGFEAN----SGVIVI 296

Query: 158 AATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRS 215
           AAT R  +L   L    RF   + +   +I   + I++   +   +    +A+       
Sbjct: 297 AATNRADVLDKALLRPGRFDRQVYVGLPDIRGREQILKVHMRKVPIGNDVDASVLARGTP 356

Query: 216 RGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255
             +      L+     FA   + + +  +  + A  ++ +
Sbjct: 357 GFSGADLANLVNEAALFAARRNKRVVDMQDFEDAKDKIYM 396


>gi|78188902|ref|YP_379240.1| ATPase [Chlorobium chlorochromatii CaD3]
 gi|78171101|gb|ABB28197.1| ATPase [Chlorobium chlorochromatii CaD3]
          Length = 396

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 46/261 (17%), Positives = 92/261 (35%), Gaps = 26/261 (9%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP    + T Q      ++  + + +         +F G  G+GKTT A++ AR L
Sbjct: 7   ARKYRPAKFSDITAQEHVTRTIQNALRSGRIGHGY----IFSGLRGVGKTTAARIFARAL 62

Query: 79  GVNFRSTSGP----VIAKAGDL-------AALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127
                         V    G+        A    N+ + D    + +  +  + E + Y 
Sbjct: 63  NCQKLIDDADYLQQVTEPCGECESCRDFDAGTSMNISEFDAASNNGVDDIRTLRENVRYG 122

Query: 128 AMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
             +      ++ E             ++++        I ATT +  +   +  R     
Sbjct: 123 PQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPPTISSRCQ-RF 181

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF-AEVAH 237
                 +E ++  +Q+  +   + V  +A   +A +++G+ R A  +L +V  F +E A 
Sbjct: 182 NFKRIPLEAIQQQLQQICEAEHIQVEADALQLVARKAQGSMRDAQSILDQVIAFSSENAL 241

Query: 238 AKTITREIADAALLRLAIDKM 258
             +IT       L  +  D M
Sbjct: 242 EGSITYRGVADLLNYIDDDTM 262


>gi|15223967|ref|NP_177871.1| replication factor C 36 kDA, putative [Arabidopsis thaliana]
 gi|12323400|gb|AAG51681.1|AC010704_25 putative replication factor C; 24844-22715 [Arabidopsis thaliana]
 gi|17529332|gb|AAL38893.1| putative replication factor C [Arabidopsis thaliana]
 gi|21436375|gb|AAM51357.1| putative replication factor C [Arabidopsis thaliana]
 gi|332197861|gb|AEE35982.1| replication factor C subunit 3 [Arabidopsis thaliana]
          Length = 369

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 77/226 (34%), Gaps = 39/226 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP++L++     +    +       K     L H+L  GPPG GKT+    VAR
Sbjct: 40  PWVEKYRPQSLDDVAAHRDIIDTIDRLTNENK-----LPHLLLYGPPGTGKTSTILAVAR 94

Query: 77  ------------ELGVNFRSTSGPVIAKAGDLAALLT-NLEDRDV--LFIDEIHRLSIIV 121
                       EL  +       V  +  D A+  + +L    V  + +DE   ++   
Sbjct: 95  KLYGPKYRNMILELNASDDRGIDVVRQQIQDFASTQSFSLGKSSVKLVLLDEADAMTKDA 154

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           +  L   +E +                   +RF LI     V  +   LQ R     R  
Sbjct: 155 QFALRRVIEKYTKS----------------TRFALIG--NHVNKIIPALQSRC-TRFRFA 195

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             +   +   ++   +   L V+D     +   S G  R A  +L+
Sbjct: 196 PLDGVHMSQRLKHVIEAERLVVSDCGLAALVRLSNGDMRKALNILQ 241


>gi|325119120|emb|CBZ54672.1| hypothetical protein NCLIV_050990 [Neospora caninum Liverpool]
          Length = 387

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 5/85 (5%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RPR +EE   Q E    L+  +E        + H+LF GPPG GKT+ A  + R
Sbjct: 35  PWVEKYRPRRVEEMAHQEEPKKMLRRILETG-----NMPHLLFYGPPGTGKTSAALALVR 89

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLT 101
           EL     + +  +   A D      
Sbjct: 90  ELFGREEAKNRLLELNASDDRGKRK 114


>gi|299140394|ref|ZP_07033553.1| DNA polymerase III, subunits gamma and tau [Acidobacterium sp.
           MP5ACTX8]
 gi|298597621|gb|EFI53800.1| DNA polymerase III, subunits gamma and tau [Acidobacterium sp.
           MP5ACTX8]
          Length = 819

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 36/251 (14%), Positives = 78/251 (31%), Gaps = 59/251 (23%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+   +  GQ       +  + A  A++      +F G  G+GKTT+A+++A  L
Sbjct: 101 ARKYRPQRFSDVVGQDHVT---RTLLNA-LAQSRIAHGYIFSGHRGIGKTTIARILASAL 156

Query: 79  GVNFRSTS------------------------------GPVIAKAGDLAALLTNLEDRD- 107
                  S                                      ++  L      R  
Sbjct: 157 NCRTAIGSPERPTPEPCETCESCLEIRLGNAVDVIEIDAATNRGIDEIRELRDAARYRPS 216

Query: 108 -----VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTR 162
                +  +DE H+++      L   +E+    ++                   + ATT+
Sbjct: 217 RDKYKIYILDEAHQITDAAFNALLKTLEEPPDHIV------------------FMMATTQ 258

Query: 163 VGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
              +   ++ R       +  +++D+   +   +K   + V +     +A    G+ R A
Sbjct: 259 PEDIPQTIRSRCQ-HFSFHAVKLDDIVGQLTAISKHENIVVDEATLSLLAEAGDGSMRDA 317

Query: 223 GRLLRRVRDFA 233
             ++ +    A
Sbjct: 318 LSIMDQAIASA 328


>gi|229819199|ref|YP_002880725.1| ATP-dependent metalloprotease FtsH [Beutenbergia cavernae DSM
           12333]
 gi|229565112|gb|ACQ78963.1| ATP-dependent metalloprotease FtsH [Beutenbergia cavernae DSM
           12333]
          Length = 684

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 68/273 (24%), Positives = 112/273 (41%), Gaps = 37/273 (13%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNL----KVFIEAAKARA---EA 53
           MM+     +R V+ E+ ++      T  +  G  EA   L    +   E AK +A   + 
Sbjct: 148 MMNFGKSKARQVNVENPEV------TFADVAGVDEAVEELVEIKEFLSEPAKFQAVGAKI 201

Query: 54  LDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD 107
              VL  GPPG GKT +A+ VA E GV F S SG       V   A  +  L    +   
Sbjct: 202 PKGVLLYGPPGTGKTLIARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFEQAKTNS 261

Query: 108 --VLFIDEIHRLSIIVEEILYPAMEDFQLD----LMVGEGPSARSVKINLSRFTLIAATT 161
             ++F+DEI  +       L    ++ +      L+  +G  A +  I       IAAT 
Sbjct: 262 PAIIFVDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFEAHTNVIL------IAATN 315

Query: 162 RVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTP 219
           R  +L   L    RF   I +   +++    I++  AK   +        ++ + +R TP
Sbjct: 316 RPDILDPALLRPGRFDRQIAVEAPDLQGRLAILRVHAKGKPMTGD----VDLEVVARRTP 371

Query: 220 RIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
             +G  L  V + A +  A++  + + + AL  
Sbjct: 372 GFSGADLANVLNEAALLTARSNAQLVDNRALDE 404


>gi|171318231|ref|ZP_02907394.1| ATP-dependent metalloprotease FtsH [Burkholderia ambifaria MEX-5]
 gi|171096575|gb|EDT41469.1| ATP-dependent metalloprotease FtsH [Burkholderia ambifaria MEX-5]
          Length = 631

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 90/249 (36%), Gaps = 23/249 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAA-------KARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G  EA   +   ++         K        VL VGPPG GKT LA+ +A E 
Sbjct: 152 NFSDVAGCDEAKEEVSELVDFLRDPQKFQKLGGRIPRGVLLVGPPGTGKTLLARAIAGEA 211

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  +    +     ++FIDEI  +       +    +
Sbjct: 212 KVPFFSISGSDFVEMFVGVGAARVRDMFEQAKKHAPCIVFIDEIDAVGRHRGAGMGGGND 271

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  M+ E     +     S   +IAAT R  +L   L    RF   + +   +I 
Sbjct: 272 EREQTLNQMLVEMDGFEAN----SGVIVIAATNRSDVLDKALLRPGRFDRQVYVGLPDIR 327

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++   +   +A   +AA         +      L+     FA     + +  +  
Sbjct: 328 GREQIMRVHLRKVPIANDVDAAVIARGTPGFSGADLANLVNEAALFAARRGKRIVEMQDF 387

Query: 247 DAALLRLAI 255
           + A  ++ +
Sbjct: 388 EDAKDKIFM 396


>gi|166031033|ref|ZP_02233862.1| hypothetical protein DORFOR_00714 [Dorea formicigenerans ATCC
           27755]
 gi|166029300|gb|EDR48057.1| hypothetical protein DORFOR_00714 [Dorea formicigenerans ATCC
           27755]
          Length = 616

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 70/312 (22%), Positives = 119/312 (38%), Gaps = 34/312 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEA-------LDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ EA  +L+  ++      +            L VGPPG GKT LA+ VA E 
Sbjct: 169 TFKDVAGQDEAKESLQEVVDFLHNPGKYTSVGAKLPKGALLVGPPGTGKTLLAKAVAGEA 228

Query: 79  GVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
            V F S SG            ++  DL      +    ++FIDEI  +    +  +    
Sbjct: 229 KVPFFSLSGSAFVEMYVGVGASRVRDLFKQAQQMAP-CIIFIDEIDAIGKSRDTQMGGND 287

Query: 130 E-DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           E +  L+ ++ E     S K  +    L+AAT R  +L   L  R G   R    E  DL
Sbjct: 288 EREQTLNQLLAEMDGFESNKGLV----LLAATNRPEILDPALL-RPGRFDRRIIVERPDL 342

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAM---RSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           K  V+    +  +   D    E       +  T    G  L  + + A +   K     +
Sbjct: 343 KGRVE----VLKVHSKDVKMDETVDLEAIALATSGAVGSDLANMINEAAINAVKNGRNAV 398

Query: 246 ADAAL-LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE--DLIEP 302
           + A L   + +  +G ++ D        +      VG   + + L +  + ++   ++  
Sbjct: 399 SQADLFEAVEVVLVGKEKKDRVMNQEERKIVSYHEVG-HALVSALQKDSEPVQKITIVPR 457

Query: 303 YMIQQGFIQRTP 314
            M   G++ +TP
Sbjct: 458 TMGALGYVMQTP 469


>gi|149372804|ref|ZP_01891825.1| ATP-dependent protease La [unidentified eubacterium SCB49]
 gi|149354501|gb|EDM43066.1| ATP-dependent protease La [unidentified eubacterium SCB49]
          Length = 805

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 52/281 (18%), Positives = 104/281 (37%), Gaps = 42/281 (14%)

Query: 25  RTLE-EFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNF 82
           + L+ +  G  +    +  ++   K R +    +L   GPPG+GKT+L + VA  LG  +
Sbjct: 341 KILDRDHYGLDDVKKRIIEYLAVLKLRNDMKSPILCLYGPPGVGKTSLGKSVAEALGREY 400

Query: 83  RSTSGPVIAKAGDLA------------ALLTNLED----RDVLFIDEIHRLSIIVE---- 122
              S   +    ++              ++ +L+       V  +DEI +LS   +    
Sbjct: 401 VRISLGGLRDEAEIRGHRKTYIGAMPGRIIQSLKKAGTSNPVFVLDEIDKLSTGNQGDPS 460

Query: 123 ----EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
               E+L P       D  +  G        +LS+   IA + R+  +   L+DR  I I
Sbjct: 461 SAMLEVLDPEQNGAFYDNFLELGY-------DLSKVMFIATSNRLDTIQPALRDRMEI-I 512

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
            ++ Y IE+   I ++   L    + +         ++    IA   L ++ +       
Sbjct: 513 NVSGYTIEEKVEIAKQ--HLLPKQLEEHGL------TKKHLTIAKPQLEKIVEGYTRESG 564

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGP 279
                +     +   A++    ++ D++    +     G P
Sbjct: 565 VRGLEKQIAKMVRYAAMNIAMEEKYDIKVSNDVIVEVLGSP 605


>gi|300710838|ref|YP_003736652.1| AAA family ATPase, CDC48 subfamily protein [Halalkalicoccus
           jeotgali B3]
 gi|299124521|gb|ADJ14860.1| AAA family ATPase, CDC48 subfamily protein [Halalkalicoccus
           jeotgali B3]
          Length = 757

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 58/257 (22%), Positives = 87/257 (33%), Gaps = 33/257 (12%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
           T E+  G       ++  IE      E            VL  GPPG GKT +A+ VA E
Sbjct: 192 TYEDIGGLDRELEQVREMIELPMRHPELFQQLGIEPPKGVLLHGPPGTGKTLMAKAVANE 251

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM 129
           +  +F + SGP I           L  +    E+    ++FIDE+  ++    E      
Sbjct: 252 IDASFHTISGPEIMSKYYGESEEQLREMFEEAEENAPAIVFIDELDSIAPKRGETSGDVE 311

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                  +V +  S         +  +I AT RV  +   L+   RF   I +   + E 
Sbjct: 312 RR-----VVAQLLSLMDGLEERGQVIVIGATNRVDAIDPALRRGGRFDREIEIGVPDKEG 366

Query: 188 LKTIVQ---RGAKL-----TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
            + I+Q   RG  L           +      A  +      A   LRR+R   E+    
Sbjct: 367 RREILQVHTRGMPLAEGIDLERYAENTHGFVGADIATLAREAAMNALRRIR--PELDLES 424

Query: 240 TITREIADAALLRLAID 256
                    AL     D
Sbjct: 425 EEIDADVLDALRVTEAD 441



 Score = 46.2 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 42/107 (39%), Gaps = 16/107 (14%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKARAEALDHV--------LFVGPPGLGKTTLAQVVAR 76
            + E+  G  +    L+  I+      E  + +        L  GPPG GKT LA+ VA 
Sbjct: 464 TSWEQVGGLEDTKERLRETIQWPLEYPEVFESMDLDAAKGVLLYGPPGTGKTLLAKAVAN 523

Query: 77  ELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIH 115
           E   NF S  GP +           +  + +   +    V+F DEI 
Sbjct: 524 EAESNFISIKGPELLNKFVGESEKGVREVFSKARENAPTVIFFDEID 570


>gi|297527514|ref|YP_003669538.1| 26S proteasome subunit P45 family [Staphylothermus hellenicus DSM
           12710]
 gi|297256430|gb|ADI32639.1| 26S proteasome subunit P45 family [Staphylothermus hellenicus DSM
           12710]
          Length = 402

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 60/281 (21%), Positives = 99/281 (35%), Gaps = 34/281 (12%)

Query: 15  EDADISLL----RPR-TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVG 61
           ED  +  +    RP  T E+  G  E    L+  +E      E            VL  G
Sbjct: 115 EDPYVKSMEVIDRPSVTFEDIGGLKEQVRELREVVELPLKNPELFEEIGIEPPKGVLLYG 174

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDE 113
           PPG GKT LA+ VA E G  F S  G  +        A  +  +      +   ++FIDE
Sbjct: 175 PPGCGKTLLAKAVAHESGATFISIVGSELVQKFIGEGARIVREVFQYARKKAPAIVFIDE 234

Query: 114 IHRLSIIVEEILYPAMEDFQLDLM--VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           I  ++    +I      + Q  LM  + E    +     L +  +IAAT R+ +L   + 
Sbjct: 235 IDAIAARRLDIGTSGEREVQRTLMQLLAEIDGFK----PLDKVKIIAATNRIDILDPAIL 290

Query: 172 D--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
              RF   I +   ++     I +   +   L    +      +    T      ++   
Sbjct: 291 RPGRFDRLIEVPLPDLNGRYEIFKVHTRKMKLGRDVDLYELARLTEGATGAEIKSIVTEA 350

Query: 230 RDFAEVAHAKTITREIADAALLRLA-----IDKMGFDQLDL 265
              A   + + + RE    A+ ++       DK     +D 
Sbjct: 351 GYNAIRNNRRQVIREDFIYAIKKVMSKKKIRDKNAEYLMDR 391


>gi|157737374|ref|YP_001490057.1| cell division protein FtsH [Arcobacter butzleri RM4018]
 gi|157699228|gb|ABV67388.1| cell division protein FtsH [Arcobacter butzleri RM4018]
          Length = 490

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 64/273 (23%), Positives = 101/273 (36%), Gaps = 35/273 (12%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH-------VLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  E    L+  ++      + L +       VL VGPPG+GKT +A+ VA E 
Sbjct: 111 TFKDVAGIREIKEELEEIVDFLNNPNKYLKYGVKLPKGVLLVGPPGVGKTLIARAVAGEA 170

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAME 130
            V F   SG       V   A  +  L    +     ++FIDEI  +  +         E
Sbjct: 171 DVPFFYQSGASFVHIYVGMGAKKVRELFAKAKQSAPSIVFIDEIDAVGKMRSGKSNDERE 230

Query: 131 DFQLDLMV-GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
               +L+   +G    S  I      +IAAT ++ +L + L    RF   + +    IED
Sbjct: 231 ATLNELLTQMDGFDGESGVI------VIAATNKIEVLDDALLRAGRFDRRVYVGLPNIED 284

Query: 188 LKTIVQRGAK-LTGLAVTDEAACEIAMRSRGTPR--IAGRLLRRVRDF--------AEVA 236
            K I++   K +      +    E A  S       I   LL  ++ +         EVA
Sbjct: 285 RKNILELYLKDINHKIDIERLVNETAGFSSAALATLINEALLNMIKSYKKNLDYKDIEVA 344

Query: 237 HAKTITREIADAALLRLAIDKMGFDQLDLRYLT 269
             K    +     L     D +   Q    Y++
Sbjct: 345 KNKLEFGKKQIKILDDEQKDILAIYQASKAYIS 377


>gi|154151004|ref|YP_001404622.1| proteasome-activating nucleotidase [Candidatus Methanoregula boonei
           6A8]
 gi|166199290|sp|A7I8B8|PAN_METB6 RecName: Full=Proteasome-activating nucleotidase; Short=PAN;
           AltName: Full=Proteasomal ATPase; AltName:
           Full=Proteasome regulatory ATPase; AltName:
           Full=Proteasome regulatory particle
 gi|153999556|gb|ABS55979.1| 26S proteasome subunit P45 family [Methanoregula boonei 6A8]
          Length = 436

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 45/215 (20%), Positives = 77/215 (35%), Gaps = 12/215 (5%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLED 105
           E    VL  GPPG GKT LA+ VA E   +F    G  +        A  +  L    + 
Sbjct: 210 EPPKGVLLYGPPGTGKTLLAKAVAHETNAHFMRVVGSELVQKYIGEGARLVRELFDLAKK 269

Query: 106 R--DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
           +   ++FIDEI  +     E       D ++   + +  +            +I AT R+
Sbjct: 270 KAPTIIFIDEIDAVGASRTEA--NTSGDREVQRTLMQLLAGMDGFETRGDVKIIGATNRI 327

Query: 164 GLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRI 221
            +L   L    RF   I +   + E   +I++   +   +  T        +        
Sbjct: 328 DILDKALLRPGRFDRIIEIPLPDEEGRLSILKVHTRTLTMEETVNLPEIAGLTEGKNGAD 387

Query: 222 AGRLLRRVRDFAEVAHAKTITREIADAALLRLAID 256
              +      +A       ITRE   +A+ ++ +D
Sbjct: 388 LRAICMEAGMYAIRNERPAITREDFLSAIEKVRLD 422


>gi|145499016|ref|XP_001435494.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124402627|emb|CAK68097.1| unnamed protein product [Paramecium tetraurelia]
          Length = 443

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 49/215 (22%), Positives = 85/215 (39%), Gaps = 17/215 (7%)

Query: 33  QVEACSNLKV--FIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE-LGVNFRSTSGPV 89
           Q      +K   F E A+        +L  GPPG GKT LA+  A E  G  F  +S  +
Sbjct: 156 QEAVLLPIKFPDFFEGART---PWKGILMYGPPGTGKTYLAKACATEAEGTFFSVSSADL 212

Query: 90  IAK-AGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGP 142
           I+K  G+   L+  L      +   ++FIDEI  +     E       D    ++     
Sbjct: 213 ISKYVGESEKLIKTLFTMAREQKPSIIFIDEIDSMCGARGEG----QNDASRRVITEFLV 268

Query: 143 SARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLA 202
             + V  +     ++ AT     L   ++ RF   I +   +++  + ++Q   K T   
Sbjct: 269 QMQGVGHDDKGVLVLGATNLPWALDTAIRRRFEKRIYIPLPDVQAREYMIQNSLKQTKTT 328

Query: 203 VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
           +T E   ++A+++ G       +L R   +  V  
Sbjct: 329 LTKEQFEDLAVKTEGYSGSDISVLVRDAVYEPVRK 363


>gi|58582572|ref|YP_201588.1| cell division protein [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|58427166|gb|AAW76203.1| cell division protein [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 648

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 52/246 (21%), Positives = 86/246 (34%), Gaps = 23/246 (9%)

Query: 26  TLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  EA   +   +       +  K   +    VL VGPPG GKT LA+ +A E 
Sbjct: 165 TFADVAGCDEAKEEVGELVDFLRDPTKFTKLGGKIPRGVLMVGPPGTGKTLLAKAIAGEA 224

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  +    +     ++FIDEI  +       L    +
Sbjct: 225 KVPFFSISGSDFVEMFVGVGASRVRDMFEQAKKHAPCIIFIDEIDAVGRHRGAGLGGGHD 284

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E       +       +IAAT R  +L   L    RF   + +   +++
Sbjct: 285 EREQTLNQLLVEMDGFEGGEG----VIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVK 340

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++   +   LA               +      L      FA     K +  +  
Sbjct: 341 GREQILRVHMRKLPLADDVVPMVIARGTPGFSGADLANLCNEAALFAARGSEKEVRMDHF 400

Query: 247 DAALLR 252
           D A  +
Sbjct: 401 DRARDK 406


>gi|28188591|gb|AAN46221.1| unknown protein [Arabidopsis lyrata]
 gi|28188593|gb|AAN46222.1| unknown protein [Arabidopsis lyrata]
          Length = 316

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 43/215 (20%), Positives = 77/215 (35%), Gaps = 37/215 (17%)

Query: 9   SRNVSQEDADISLLRPR---------TLEEFTGQVEACSNLKVFIEAAKARAEALDH--- 56
           S+ V+ ++     +RP          T  +     E   +L+  +     R +       
Sbjct: 1   SKEVAPDNEFEKRIRPEVIPANEIGVTFADIGSLDETKESLQELVMLPLRRPDLFKGGLL 60

Query: 57  -----VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLED 105
                +L  GPPG GKT +A+ +A E G +F + S   I          ++ AL T    
Sbjct: 61  KPCRGILLFGPPGTGKTMMAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAK 120

Query: 106 --RDVLFIDEIH-----RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIA 158
               ++F+DE+      R  +   E +     +F              +     R  ++A
Sbjct: 121 VSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFM-------THWDGLMSNAGDRILVLA 173

Query: 159 ATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           AT R   L   +  RF   I +    +E  + I++
Sbjct: 174 ATNRPFDLDEAIIRRFERRIMVGLPSVESREKILR 208


>gi|78779330|ref|YP_397442.1| ATP-dependent metalloprotease FtsH [Prochlorococcus marinus str.
           MIT 9312]
 gi|78712829|gb|ABB50006.1| ATP-dependent metalloprotease FtsH [Prochlorococcus marinus str.
           MIT 9312]
          Length = 584

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 55/266 (20%), Positives = 99/266 (37%), Gaps = 33/266 (12%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVARE 77
              ++  G  EA   LK  I   K         A+    VL +GPPG GKT LA+ +A E
Sbjct: 131 TRFDDVAGVPEAAEELKEVITFLKEPKKFENLGAKVPKGVLLIGPPGTGKTLLAKAIAGE 190

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
            GV F S S            A  +  L    +++   ++FIDEI  +       +    
Sbjct: 191 SGVPFLSISASEFVELFVGVGASRVRELFFKAKEKSPCIIFIDEIDSIGRQRGSGIGGGN 250

Query: 130 EDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           ++ +  L  ++ E         + S   ++AAT R  +L   L    RF   I +   ++
Sbjct: 251 DEREQTLNQLLTELDGF----ADNSGIIVLAATNRPDILDAALLRPGRFDRKIEVMLPDL 306

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           +  K I+     +  L        ++   +  T   +G       D A + +   I    
Sbjct: 307 DGRKKILS----VHSLPKPLSKEVDLGYWASRTVGFSG------ADLANLMNESAIHCAR 356

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMI 271
            ++ L+     +   D++ +   + +
Sbjct: 357 DESKLISDLHIENALDKITIGLRSSL 382


>gi|312130473|ref|YP_003997813.1| membrane protease ftsh catalytic subunit [Leadbetterella byssophila
           DSM 17132]
 gi|311907019|gb|ADQ17460.1| membrane protease FtsH catalytic subunit [Leadbetterella byssophila
           DSM 17132]
          Length = 658

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 56/248 (22%), Positives = 86/248 (34%), Gaps = 24/248 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  EA   L   +E  K          +     L VGPPG GKT +A+ VA E 
Sbjct: 199 TFADVAGLDEAKEELTEIVEFLKKPTKYTELGGKIPKGALLVGPPGTGKTLMAKAVAGEA 258

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  L    +++   ++FIDEI  +     +   P   
Sbjct: 259 SVPFFSLSGSDFVEMFVGVGAARVRDLFKQAKEKAPCIIFIDEIDAVGRSRGKGAMPGGN 318

Query: 131 D---FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           D     L+ ++ E     S         ++AAT R  +L   L    RF   I ++  +I
Sbjct: 319 DERENTLNSLLVEMDGFGSDTG----IIILAATNRPDVLDAALLRPGRFDRQISVDVPDI 374

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
              + I +   K    +   +A    A            +       A     K +  + 
Sbjct: 375 NGREAIFKVHLKPIKASSEVDAKKLAAQTPGFAGAEIANVCNEAALLAARRGKKEVEMKD 434

Query: 246 ADAALLRL 253
              A+ R 
Sbjct: 435 FQDAIDRE 442


>gi|227872171|ref|ZP_03990539.1| ATP dependent protease ATP-binding subunit [Oribacterium sinus
           F0268]
 gi|227841984|gb|EEJ52246.1| ATP dependent protease ATP-binding subunit [Oribacterium sinus
           F0268]
          Length = 438

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 66/146 (45%), Gaps = 27/146 (18%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEF-----TGQVEACSNLKVFIEAAKARAEAL----- 54
           E +   N   E +DI LL+P+ +++F      GQ EA   L V +     R  +      
Sbjct: 47  EEMGGENAGSEVSDIHLLKPKEIKDFLDEYVIGQDEAKKVLSVAVYNHYKRITSKVRDID 106

Query: 55  ---DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL---- 103
               ++L +GP G GKT LAQ +A+ LGV F       + +AG    D+  +L  L    
Sbjct: 107 VQKSNILMIGPTGTGKTYLAQTLAKILGVPFAIADATALTEAGYVGEDVENILLKLIQAA 166

Query: 104 ------EDRDVLFIDEIHRLSIIVEE 123
                  +  +++IDEI +++   E 
Sbjct: 167 DYDISKAEIGIIYIDEIDKITKKSEN 192


>gi|291457316|ref|ZP_06596706.1| ATP-dependent metalloprotease FtsH [Bifidobacterium breve DSM
           20213]
 gi|291381151|gb|EFE88669.1| ATP-dependent metalloprotease FtsH [Bifidobacterium breve DSM
           20213]
          Length = 698

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 49/208 (23%), Positives = 77/208 (37%), Gaps = 12/208 (5%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108
           VL  GPPG GKT LA+ +A E GV F S +G       V   A  +  L    +     +
Sbjct: 254 VLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEMFVGLGASRVRDLFDEAKKNAPAI 313

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +FIDEI  +       +    ++ +  L   +         N +   +IAAT R  +L  
Sbjct: 314 IFIDEIDAVGRKRGSGMGGGHDEREQTL--NQLLVEMDGFDNDTNLIIIAATNRPDVLDP 371

Query: 169 PLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
            L    RF   + +   ++E  + I++  AK        +           T      +L
Sbjct: 372 ALLRPGRFDRQVGVAAPDLEGREAILKVHAKGKPFVPDVDLHMVAVRTPGFTGADLANVL 431

Query: 227 RRVRDFAEVAHAKTITREIADAALLRLA 254
                    A A+ I     D A+ R+ 
Sbjct: 432 NEAALLCARAGAQLIDNRAIDEAIDRVQ 459


>gi|255580390|ref|XP_002531022.1| Transitional endoplasmic reticulum ATPase, putative [Ricinus
           communis]
 gi|223529397|gb|EEF31360.1| Transitional endoplasmic reticulum ATPase, putative [Ricinus
           communis]
          Length = 1029

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 46/200 (23%), Positives = 77/200 (38%), Gaps = 34/200 (17%)

Query: 30  FTGQVEACSNLKVFI--------EAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN 81
             G   A   L+  I        EA +   +    +L  GPPG GKT+L + V RE G +
Sbjct: 46  IAGNQAALEALRELILFPILYSHEAKRLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH 105

Query: 82  FRSTSGPVIAK--AGDLAALLTNL----------EDRDVLFIDEIHRL-----SIIVEEI 124
               S   + K  AG+   +L                 V+FIDEI  L     +   +++
Sbjct: 106 LVVISPHSVHKAYAGESEKILREAFSEAVSHTLSGKPSVIFIDEIDALCPRRDARREQDV 165

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ--DRFGIPIRLNF 182
              +    QL  ++           +L++  ++A+T RV  +   L+  +RF   I +  
Sbjct: 166 RLAS----QLFALMDANT---CSSTSLAQVVVVASTNRVDAIDPALRRSERFDAEIEVTT 218

Query: 183 YEIEDLKTIVQRGAKLTGLA 202
              E+   I++   K   L 
Sbjct: 219 PTEEERFQILKLYTKKLPLE 238



 Score = 42.0 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 43/186 (23%), Positives = 72/186 (38%), Gaps = 24/186 (12%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHV--------LFVGPPGLGKTTLAQVVARELG 79
           E+  G  +    L+  +E     + A   +        L  GPPG  KTTLA+  A    
Sbjct: 314 EDIGGLKDLKKKLQQAVEWPIKHSAAFSRMGISPVRGVLLHGPPGCSKTTLAKAAANAAQ 373

Query: 80  VNFRSTSGPVIAK--AGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPA--M 129
            +F S SG  +     G+  ALL N   R       ++F DE+  L+         +  +
Sbjct: 374 TSFFSLSGAELYSMYVGEGEALLRNTFQRARLAAPSIIFFDEVDVLAARRGGSSSNSTTV 433

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            +  L  ++ E       K  L    ++AAT R   + + L    RF + + +   ++E 
Sbjct: 434 GERLLSTLLTEMDGLEQTKGIL----VLAATNRPHAIDDALMRPGRFDLVLYVPPPDLEA 489

Query: 188 LKTIVQ 193
              I+ 
Sbjct: 490 RYEILH 495


>gi|212542291|ref|XP_002151300.1| intermembrane space AAA protease IAP-1 [Penicillium marneffei ATCC
           18224]
 gi|210066207|gb|EEA20300.1| intermembrane space AAA protease IAP-1 [Penicillium marneffei ATCC
           18224]
          Length = 788

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 56/250 (22%), Positives = 90/250 (36%), Gaps = 26/250 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G  EA   L+  +E        +    +    VL VGPPG GKT LA+ VA E 
Sbjct: 319 RFSDVHGCDEAKDELQEVVEFLLNPERFSTLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 378

Query: 79  GVNFRSTSGPVIA------KAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAME 130
           GV F   SG           A  +  L      +   ++FIDE+  +     E    A  
Sbjct: 379 GVPFFYMSGSEFDEVYVGVGAKRVRDLFAQARAKAPAIIFIDELDAIGAKRNER-DAAYV 437

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
              L+ ++ E           S   ++AAT    LL   L    RF   + +   ++   
Sbjct: 438 KQTLNQLLTELDGFSQT----SGVIILAATNYPQLLDKALTRPGRFDRRVVVGLPDVRGR 493

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             I++   K    +       ++A+ +RGTP  +G  L  + + A V  ++     +   
Sbjct: 494 MEILKHHMKGVQTSTD----VDVAVIARGTPGFSGADLENLVNQAAVHASRHKEDRVGPK 549

Query: 249 ALLRLAIDKM 258
                    M
Sbjct: 550 DFDWAKDKIM 559


>gi|218441710|ref|YP_002380039.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7424]
 gi|218174438|gb|ACK73171.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7424]
          Length = 625

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 60/253 (23%), Positives = 91/253 (35%), Gaps = 23/253 (9%)

Query: 27  LEEFTGQVEACSNLK-VFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRST 85
           L E  G     S  +   I A   R      VL VGPPG GKT LA+ VA E  V F S 
Sbjct: 180 LAEIVG--FLKSPQRYNAIGARIPRG-----VLLVGPPGTGKTLLAKAVAGEAKVPFFSI 232

Query: 86  SGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
           SG         A A  +  L    + +   ++FIDE+  +        +    D +   +
Sbjct: 233 SGSEFVELFVGAGAARVRDLFEQAKKKAPCIIFIDELDAIGKSRAGNGFVGGNDEREQTL 292

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRG 195
                         +   ++AAT R   L   L    RF   + ++  ++     I++  
Sbjct: 293 NQLLTEMDGFSAGDATVIVLAATNRPETLDPALLRPGRFDRQVLVDRPDLSGRLKILEIY 352

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL-LRLA 254
           A+   L   D    EIA R   TP  AG  L  + + A +  A+     +    L   + 
Sbjct: 353 AQKVKLD-KDVDLKEIATR---TPGFAGADLANLINEAALLAARNERTTVGQEDLREAIE 408

Query: 255 IDKMGFDQLDLRY 267
               G ++     
Sbjct: 409 RIVAGLEKKSRVL 421


>gi|152973913|ref|YP_001373430.1| ATP-dependent metalloprotease FtsH [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152022665|gb|ABS20435.1| ATP-dependent metalloprotease FtsH [Bacillus cytotoxicus NVH
           391-98]
          Length = 639

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 62/248 (25%), Positives = 90/248 (36%), Gaps = 27/248 (10%)

Query: 26  TLEEFTG-----QV--EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G     Q   E    LK   + A+  A     VL VGPPG GKT LA+ VA E 
Sbjct: 160 RFRDVAGADEEKQELVEVVEFLKDPRKFAEVGARIPKGVLLVGPPGTGKTLLARAVAGEA 219

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG       V   A  +  L  N +     ++FIDEI  +       L    +
Sbjct: 220 GVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCIIFIDEIDAVGRQRGAGLGGGHD 279

Query: 131 DFQLD----LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
           + +      L+  +G  A    I      +IAAT R  +L   L    RF   I ++  +
Sbjct: 280 EREQTLNQLLVEMDGFGANEGII------IIAATNRPDILDPALLRPGRFDRQITVDRPD 333

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +   + +++  A+   L    +           +      LL      A   + K I   
Sbjct: 334 VNGREAVLKVHARNKPLDEDIDLRAIATRTPGFSGADLENLLNEAALVAARQNKKKIDMS 393

Query: 245 IADAALLR 252
             D A  R
Sbjct: 394 DIDEATDR 401


>gi|330723806|gb|AEC46176.1| cell division protein [Mycoplasma hyorhinis MCLD]
          Length = 726

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 56/249 (22%), Positives = 101/249 (40%), Gaps = 27/249 (10%)

Query: 25  RTLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +   +  G +E    ++ F+       + A A A+    +L  GPPG GKT +A+  A E
Sbjct: 234 KRFSDVAGNIEVKEEIEEFVDYLRNPKKYASAGAKIPKGILLGGPPGTGKTLIAKATAGE 293

Query: 78  LGVNFRSTSGP------VIAKAGDLAALLT--NLEDRDVLFIDEIHRLSIIVEEILYPAM 129
             V F   S        V   A  +  L      E   ++FIDE+  +       +    
Sbjct: 294 ANVPFFFISASNFVELYVGVGAKRVRELFKDARAEAPAIIFIDELDAIGRSRGSGIGGGN 353

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
           ++ +  L   +        +  S   +IAAT R  +L   L    RF   + +N+ +I++
Sbjct: 354 DEREQTL--NQLLVEMDGMVENSGLLIIAATNRTDVLDPALMRPGRFDRTVIVNYPDIKE 411

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV----AHAKTITR 243
            + I++  AK   ++    ++ + +  ++ TP  +G  L  V + A +         IT 
Sbjct: 412 REEILKLHAKGKRIS----SSVQFSNVAKRTPGFSGAQLENVINEATLLSVREKTDVITN 467

Query: 244 EIADAALLR 252
           E  D A+ R
Sbjct: 468 EQIDEAIDR 476


>gi|304404688|ref|ZP_07386349.1| ATPase associated with various cellular activities AAA_3
           [Paenibacillus curdlanolyticus YK9]
 gi|304346495|gb|EFM12328.1| ATPase associated with various cellular activities AAA_3
           [Paenibacillus curdlanolyticus YK9]
          Length = 322

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 61/260 (23%), Positives = 95/260 (36%), Gaps = 39/260 (15%)

Query: 30  FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPV 89
             G+ E    L + +  +        HVL    PG GKT LA+  AR +  +FR      
Sbjct: 23  IIGKDELIDKLTIALLTS-------GHVLLEDVPGTGKTLLAKSFARSVDCSFRRVQFTP 75

Query: 90  IAKAGDLAAL------LTNLEDRD------VLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
                DL+ +      L+  E R       VL  DEI+R +   +  L   ME+ Q+  +
Sbjct: 76  DLMPSDLSGISFFNQKLSEFEFRPGPLFTNVLLADEINRATPRTQSSLLECMEERQIS-V 134

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVG-----LLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
            G+          +  F +IA    +       L     DRF   + + +   E+   ++
Sbjct: 135 DGQT------HQLMPPFLVIATQNPIEQQGTFPLPEAQLDRFLFKLSVGYPSSEESVQLL 188

Query: 193 QR--GAKLTG--LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR----E 244
            R   A+      AV D AA E A R     ++   LLR + + AE+   +         
Sbjct: 189 NRFKAAQPLDQLNAVVDVAALEEAQRLSAQVQVHDDLLRYIVNIAELTRQQEEVAIGVSP 248

Query: 245 IADAALLRLAIDKMGFDQLD 264
               ALLR +         D
Sbjct: 249 RGMQALLRASQAHAAMQGRD 268


>gi|297833304|ref|XP_002884534.1| hypothetical protein ARALYDRAFT_477873 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297330374|gb|EFH60793.1| hypothetical protein ARALYDRAFT_477873 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 940

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 45/268 (16%), Positives = 90/268 (33%), Gaps = 41/268 (15%)

Query: 16  DADISLLRPRTL--EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQ 72
           D +  +LR   +  E+  G  +    +  FI   + R  +   ++   GPPG+GKT++ +
Sbjct: 405 DENFDVLRAEKILDEDHYGLSDVKERILEFIAVGRLRGTSQGKIICLSGPPGVGKTSIGR 464

Query: 73  VVARELGVNFRSTSGPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHR 116
            +AR L   F   S   ++   ++                        +  ++ IDEI +
Sbjct: 465 SIARALDRKFFRFSVGGLSDVAEIKGHRRTYIGAMPGKMVQCLKNVGTENPLVLIDEIDK 524

Query: 117 LSI---------IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           L +          + E+L P      LD          +V I+LS+   +        + 
Sbjct: 525 LGVRCHDGDPASAMLELLDPEQNANFLD-------HYLNVTIDLSKVLFVCTANVTDTIP 577

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
           +PL DR  +     +   E +       A+   +            +   +      L+ 
Sbjct: 578 SPLLDRMEVITLSGYITDEKMH-----IARDYLVKTARRDCGIKPEQVDVSDAALLSLIE 632

Query: 228 RVRDFAEVAHAKTITREIADA-ALLRLA 254
                A V + +    ++    AL  + 
Sbjct: 633 NYCREAGVRNLQKQIEKVFRKIALKLVR 660


>gi|240147503|ref|ZP_04746104.1| cell division protein FtsH [Roseburia intestinalis L1-82]
 gi|257200292|gb|EEU98576.1| cell division protein FtsH [Roseburia intestinalis L1-82]
          Length = 511

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 63/276 (22%), Positives = 106/276 (38%), Gaps = 28/276 (10%)

Query: 26  TLEEFTGQVEACSNLKV---FIEAAKARAEA----LDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ EA  +L+    F+   K  +E         L VGPPG GKT LA+ VA E 
Sbjct: 193 TFKDVAGQDEAKESLQEVVDFLHNPKKYSEIGAKLPKGALLVGPPGTGKTLLAKAVAGEA 252

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S +G       V   A  +  L    + +   ++FIDEI  +     +  Y   +
Sbjct: 253 KVPFFSLAGSDFVEMFVGVGASRVRDLFKEAQKQAPCIIFIDEIDAIGKSR-DTRYGGND 311

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E     + K  L    ++AAT R  +L   L    RF   I ++  +++
Sbjct: 312 EREQTLNQLLAEMDGFDTSKGLL----ILAATNRPEVLDKALLRPGRFDRRIIVDKPDLK 367

Query: 187 -DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
             L+T+      +      D  A  +A        +A  +     + A     K + +  
Sbjct: 368 GRLETLKVHSKDVMMDETVDLDALALATAGLVGSDLANMINEAAIN-AVKNGRKFVNQSD 426

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVG 281
              A   +A+   G ++ D        +      VG
Sbjct: 427 LFDAFELVAV--GGKEKKDRIMSDKERKIVSYHEVG 460


>gi|260816555|ref|XP_002603036.1| hypothetical protein BRAFLDRAFT_123994 [Branchiostoma floridae]
 gi|229288351|gb|EEN59048.1| hypothetical protein BRAFLDRAFT_123994 [Branchiostoma floridae]
          Length = 572

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 89/243 (36%), Gaps = 25/243 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAK-------ARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  EA   L+  ++  +          +    VL VGPPG GKT LA+ VA E 
Sbjct: 326 TFDDVKGCQEAKEELEEVVKFLRDPDRFTNLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 385

Query: 79  GVNFRSTSGPVIA------KAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F   SG           A  +  L T  +     V+F+DE+  +     +       
Sbjct: 386 DVPFFYASGSEFDEMFVGVGASRVRNLFTAAKKNAPCVVFLDELDSVGGKRVDSPVHPYS 445

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
              ++ ++ E    +  +       ++ AT  V +L   L    RF   + +   +++  
Sbjct: 446 RMTINQLLAEMDGFKQNEG----VIVMGATNFVEVLDPALTRPGRFDTTVTVPRPDVKGR 501

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             I++       +    +      + +RGT    G  L  + + A +  A    + +  A
Sbjct: 502 LEILKLYLGKVKVDSDVDG----DILARGTVGFTGADLENMVNQAALHAASVGHQFVTMA 557

Query: 249 ALL 251
            L 
Sbjct: 558 DLE 560


>gi|332668079|ref|YP_004450867.1| Microtubule-severing ATPase [Haliscomenobacter hydrossis DSM 1100]
 gi|332336893|gb|AEE53994.1| Microtubule-severing ATPase [Haliscomenobacter hydrossis DSM 1100]
          Length = 446

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 51/242 (21%), Positives = 85/242 (35%), Gaps = 28/242 (11%)

Query: 11  NVSQEDADISLLRPR-TLEEFTGQVEACSNLKVFI-------EAAKARAEALDH-VLFVG 61
              +ED  I   RP+ +  +  G  +    +++ I       E  KA  + +   +L  G
Sbjct: 150 ETEEEDRIIEFERPKVSFNDVGGMEKVKEEIRLKIIHPLEHPEIYKAYGKKIGGGILLYG 209

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDE 113
           PPG GKT LA+  A ++  NF +     I          +L A+          VLF DE
Sbjct: 210 PPGCGKTHLARATAGQIKSNFMAVGINEILDMWLGQSEKNLHAIFQKARQIKPCVLFFDE 269

Query: 114 IHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD- 172
           +  L     ++   A        +       +S    L    ++AAT     L    +  
Sbjct: 270 VDALGANRSDMRMSAGRHLINQFLNELDGIEQSNDGVL----VLAATNAPWHLDPAFRRP 325

Query: 173 -RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            RF   I +   +      I++   +   +   D         ++ TP  +G  L  V D
Sbjct: 326 GRFDRIIFVPPPDEAGRTAILEIHLRDKPVKDVD-----YLKIAQKTPGFSGADLEAVID 380

Query: 232 FA 233
            A
Sbjct: 381 IA 382


>gi|307354882|ref|YP_003895933.1| ATPase [Methanoplanus petrolearius DSM 11571]
 gi|307158115|gb|ADN37495.1| ATPase associated with various cellular activities AAA_3
           [Methanoplanus petrolearius DSM 11571]
          Length = 328

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 65/178 (36%), Gaps = 23/178 (12%)

Query: 30  FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPV 89
             GQ E    L + + A         HVL  G PG+ KT   + ++  +  +F       
Sbjct: 30  IVGQDEVIERLLIALSAG-------GHVLLEGVPGIAKTLTIKTLSECIDTDFSRIQFTP 82

Query: 90  IAKAGDLAALL----TNLEDRDV--------LFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
                D+         N E   V        +  DEI+R    V+  L  AM+++Q+ + 
Sbjct: 83  DLLPSDIVGTRIYNHQNGEFSTVKGPIFANFILADEINRAPPKVQSALLEAMQEYQVTI- 141

Query: 138 VGEGPSARSVKINLSRFTLIAATTR-VGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
             +G +           T     +     L     DRF + + + + E+ED  T++ R
Sbjct: 142 --QGSTFPLTNPFFVLATENPIESEGTYPLPEAQVDRFMLKVMMTYPELEDEVTVLDR 197


>gi|296390101|ref|ZP_06879576.1| DNA polymerase III subunits gamma and tau [Pseudomonas aeruginosa
           PAb1]
          Length = 453

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 58/306 (18%), Positives = 90/306 (29%), Gaps = 37/306 (12%)

Query: 30  FTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
             GQ      LK  I A     + L H  LF G  G+GKTT+A+++A+ L      +S P
Sbjct: 1   MVGQTHV---LKALINA--LDNQRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVSSTP 55

Query: 89  VIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEIL-----YPAMEDFQLDLMVGEG 141
                G+ +      E R  D++ +D   R  +     L     Y          ++ E 
Sbjct: 56  ----CGECSVCREIDEGRFVDLIEVDAASRTKVEDTRELLDNVQYSPTRGRYKVYLIDEV 111

Query: 142 PSARSVKIN---------LSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
               S   N               + ATT    L   +  R  +   L     E +   +
Sbjct: 112 HMLSSHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSRC-LQFSLKNMPPERVVEHL 170

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL-L 251
                   +   D+A   +   + G+ R A  L     D A       +      A L  
Sbjct: 171 THVLGAENVPFEDDALWLLGRAADGSMRDAMSL----TDQAIAFGEGKVLAADVRAMLGT 226

Query: 252 RLAIDKMG-----FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
                  G      +      L  +      GP     ++  L+           P  I 
Sbjct: 227 LDHGQVYGVLQALLEGDARALLEAVRHLAEQGPDWGGVLAEILNVLHRVAIAQALPEAID 286

Query: 307 QGFIQR 312
            G   R
Sbjct: 287 NGQGDR 292


>gi|261417160|ref|YP_003250843.1| ATP-dependent metalloprotease FtsH [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261373616|gb|ACX76361.1| ATP-dependent metalloprotease FtsH [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 696

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 66/267 (24%), Positives = 105/267 (39%), Gaps = 30/267 (11%)

Query: 25  RTLEEFTGQVEACSNLKVFIE-------AAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
            T  +  G  EA  +L+  +E         K         L VGPPG GKT LA+ VA E
Sbjct: 187 TTFNDVAGCDEAKQDLQELVEFLKDPKKYDKLGGRIPKGALLVGPPGTGKTLLARAVAGE 246

Query: 78  LGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
            GV F S SG       V   A  +  L    +     +LFIDEI  +       L    
Sbjct: 247 AGVPFFSMSGSDFVEMFVGVGASRVRDLFETGKKNAPCILFIDEIDAVGRQRGAGLGGGH 306

Query: 130 EDFQLD----LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183
           ++ +      L+  +G +A    I       IAAT R  +L   L    RF   I +   
Sbjct: 307 DEREQTLNQLLVEMDGFTANEGVIL------IAATNRPDVLDKALLRPGRFDRQIVVGLP 360

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           +++  + I++   K   + + D+   ++   ++GTP +AG  L  + + A +  A+   +
Sbjct: 361 DLKGREEILKVHLKKRKVPLGDD--VDVKAVAKGTPGLAGADLENLVNEAALLAARFNNK 418

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTM 270
           ++        A DK+         L  
Sbjct: 419 KVTMLDFEE-ARDKLSMGAERRTLLMT 444


>gi|209875483|ref|XP_002139184.1| ATPase, AAA family protein [Cryptosporidium muris RN66]
 gi|209554790|gb|EEA04835.1| ATPase, AAA family protein [Cryptosporidium muris RN66]
          Length = 525

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 48/121 (39%), Gaps = 18/121 (14%)

Query: 21  LLRPRTL---EEFTGQVEACSNLKVFIEAAKARAE-------ALDHVLFVGPPGLGKTTL 70
            +RP++L    +  G  E    L+  I     R +       A   +L  GPPG GKT L
Sbjct: 236 RIRPKSLISENDVIGLQEVKKMLRDKIINPIQRPDLHIGLHSAPRGILLFGPPGTGKTML 295

Query: 71  AQVVARELGVNFRSTSGPVIAKA--GDLAALLTNL------EDRDVLFIDEIHRLSIIVE 122
           A+ +A E    F   S   I     G+   ++  L          ++FIDEI  +    +
Sbjct: 296 AKWIANECKATFFDVSPGSIMSKFYGETENIIKALFLIAEFSSPSIIFIDEIDSIFSKRK 355

Query: 123 E 123
           E
Sbjct: 356 E 356


>gi|167630672|ref|YP_001681171.1| cell division cycle protein 48 [Heliobacterium modesticaldum Ice1]
 gi|167593412|gb|ABZ85160.1| cell division cycle protein 48 [Heliobacterium modesticaldum Ice1]
          Length = 580

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 53/208 (25%), Positives = 71/208 (34%), Gaps = 40/208 (19%)

Query: 15  EDADISLLRPR-----TLEEFTGQVEACSNLKVFIEAAKARAEALD-----------HVL 58
           ++      RP      T  +  G       L++  EA +      D            VL
Sbjct: 290 DNPMEDFFRPVKPGKVTYADVGG---LKEELRLLREAVELPLRYPDLVRTLNITPPKGVL 346

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLF 110
             GPPG GKT LAQ VA E+   F +  GP             L  L    E +   ++F
Sbjct: 347 LYGPPGCGKTLLAQAVANEVEATFFAVKGPEFLSSLHGQSEKRLRDLFAQAEKKAPSIIF 406

Query: 111 IDEIHRLS--IIVEEILYPAM-EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
            DEI   +         Y A      L LM G    A+ V I        A T R+ +L 
Sbjct: 407 FDEIDAFAFDRSRTTTSYEATLVAQFLSLMDGFDRRAQVVVI--------ATTNRLDVLD 458

Query: 168 NPLQD--RFGIPIRLNFYEIEDLKTIVQ 193
             L    RF   I +    +ED   I +
Sbjct: 459 KALLRPGRFDYRICVTVPTVEDRLQIFK 486


>gi|167377096|ref|XP_001734281.1| vacuolar protein sorting-associating protein 4A [Entamoeba dispar
           SAW760]
 gi|165904312|gb|EDR29570.1| vacuolar protein sorting-associating protein 4A, putative
           [Entamoeba dispar SAW760]
          Length = 419

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 68/194 (35%), Gaps = 19/194 (9%)

Query: 28  EEFTGQVEACSNLK-------VFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
           E+  G  +A   L+        F +    + +    +L  GPPG GK+ LA+ VA E   
Sbjct: 111 EDVIGLEKAKEALQEAVILPIKFPQLFTDKRKPWTGILLFGPPGTGKSFLAKAVATEADS 170

Query: 81  NFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDF 132
            F S S   +           +  L          ++F+DE+  L     +    A    
Sbjct: 171 TFYSVSASSLLSKYLGESEKMVKELFETARKNKPSIIFVDEVDSLCSSRGDGETEASRRV 230

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           + + +V       S++  L    ++ AT     L   ++ RF   I +   +      ++
Sbjct: 231 KTEFLVQMNGVGNSMEGVL----MLGATNIPWQLDTAIRRRFEKRIYIGLPDASARAKMI 286

Query: 193 QRGAKLTGLAVTDE 206
           +         +TD 
Sbjct: 287 KWNLGKLPNQLTDN 300


>gi|149432353|ref|XP_001518051.1| PREDICTED: similar to olfactory receptor Olr396, partial
           [Ornithorhynchus anatinus]
          Length = 208

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 34/93 (36%), Gaps = 11/93 (11%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE----- 77
           RP+ ++E   Q E  + L+  +E A      L ++LF GPPG GKT+     ARE     
Sbjct: 117 RPKRVDEVAYQEEVVAVLRRSLEGAD-----LPNLLFYGPPGTGKTSTILAAARELYGPE 171

Query: 78  -LGVNFRSTSGPVIAKAGDLAALLTNLEDRDVL 109
                    +         +   +       V 
Sbjct: 172 LFRQRVLELNASDERGIQVVREKVKTFAQLTVA 204


>gi|308808586|ref|XP_003081603.1| putative cell division protein FtsH3 [Oryza sativa (ISS)
           [Ostreococcus tauri]
 gi|116060068|emb|CAL56127.1| putative cell division protein FtsH3 [Oryza sativa (ISS)
           [Ostreococcus tauri]
          Length = 749

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 55/251 (21%), Positives = 97/251 (38%), Gaps = 28/251 (11%)

Query: 25  RTLEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
            T  +  G  EA   L+  ++        A+  A     V+ VG PG GKT LA+ VA E
Sbjct: 258 TTFADVAGVDEAKEELQEIVDILKRPEKYARLGARPPSGVMLVGAPGTGKTLLARAVAGE 317

Query: 78  LGVNFRSTSGPVI--------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
            GV F S S            A+  ++ A     +   ++FIDEI  ++    +     M
Sbjct: 318 AGVPFISISASEFVELSRYGSARVREVFA-RAKAQSPSIVFIDEIDAVAKSRGDGKMRGM 376

Query: 130 ----EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183
                +  L+ ++ E     +  + +     IAAT R   L   L+   RF   + ++  
Sbjct: 377 GNDEREQTLNQLLTELDGFETESMVIC----IAATNRADTLDAALRRPGRFDRTVSVDRP 432

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSR--GTPRIAGRLLRRVRDFAEVAHAKTI 241
           + +  + I+        L + ++A  ++  +     T      L+      A  +   T+
Sbjct: 433 DKQGRREILAVHTGRRHLPLAEDAGLDVIAQMTAGFTGADLENLVNEAALLAGRSGKSTV 492

Query: 242 TREIADAALLR 252
                +AA+LR
Sbjct: 493 GYADFEAAVLR 503


>gi|86607507|ref|YP_476269.1| FtsH family metalloprotease [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86556049|gb|ABD01006.1| metalloprotease, ATP-dependent, FtsH family [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 640

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 60/245 (24%), Positives = 95/245 (38%), Gaps = 27/245 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
             ++  G  EA   L+  +   K         A+    VL VGPPG GKT LA+ +A E 
Sbjct: 169 KFDDVAGIEEAKEELQEVVTFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA 228

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG           A  +  L    ++    ++FIDEI  +       +    +
Sbjct: 229 GVPFFSLSGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFIDEIDAVGRQRGAGIGGGND 288

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E               +IAAT R  +L   L    RF   I ++    +
Sbjct: 289 EREQTLNQLLTEMDGFEGNTG----IIVIAATNRPDVLDAALLRPGRFDRQITVDRPSFK 344

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
               I++  A+   LA  + +   IA R   TP  AG  L  + + A +  A+     I 
Sbjct: 345 GRYEILRVHARNKKLA-EEVSLEAIARR---TPGFAGADLANLLNEAAILAARRQRMAIT 400

Query: 247 DAALL 251
           +  + 
Sbjct: 401 NQDIE 405


>gi|71281938|ref|YP_270411.1| DNA polymerase III, gamma/tau subunit [Colwellia psychrerythraea
           34H]
 gi|71147678|gb|AAZ28151.1| DNA polymerase III, gamma/tau subunit [Colwellia psychrerythraea
           34H]
          Length = 715

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 48/259 (18%), Positives = 77/259 (29%), Gaps = 59/259 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP+  ++  GQ    + L     A     + L H  LF G  G+GKTT+A++ A+ L   
Sbjct: 11  RPKNFQQLMGQEHVVNVL-----ANALSQKRLHHAYLFTGTRGVGKTTIARIFAKSLNCE 65

Query: 82  ------------------------FRSTSGPVIAKAGDLAALLTNLE------DRDVLFI 111
                                             K  D   +L N++         V  I
Sbjct: 66  LGITDKPCGKCDACIDIDQGRFVDLLEIDAASKTKVDDTREILDNVQYAPSRGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         I ATT    L   + 
Sbjct: 126 DEVHMLSRHSFNALLKTLEE------------------PPEHVKFILATTDPQKLPITVL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L    ++ ++  +        ++        +A  +RG+ R +  L     D
Sbjct: 168 SRC-LQFHLKALTVKQIEDKLAEILSHEQVSHEQGCLTLLAKAARGSMRDSLSL----TD 222

Query: 232 FAEVAHAKTITREIADAAL 250
            A       I        L
Sbjct: 223 QAIAQGQGHINLTNIQQML 241


>gi|28210482|ref|NP_781426.1| regulatory protein moxR [Clostridium tetani E88]
 gi|28202919|gb|AAO35363.1| regulatory protein moxR [Clostridium tetani E88]
          Length = 324

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 41/181 (22%), Positives = 68/181 (37%), Gaps = 31/181 (17%)

Query: 30  FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTS--- 86
             GQ E   NL + + A         +VL  G PGLGKT L + + + L + F       
Sbjct: 24  IIGQDEVIKNLLIGVIAG-------GNVLLEGMPGLGKTQLVKTIGKVLDLEFSRIQFTP 76

Query: 87  ---------GPVIAKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                      +I K  +              ++  DEI+R +   +  L  AME+ ++ 
Sbjct: 77  DLMPSDIVGSEIIRKKNENIEFTFKKGPIFSSIILADEINRATPKTQSALLEAMEEKRVT 136

Query: 136 LMVGEGPSARSVKINLSRF---TLIAATTR-VGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
           +        ++ ++    F   T     T     L     DRF   + ++F +IE + TI
Sbjct: 137 V------GNKTYELPNPFFVLATQNPLETEGTYPLPEAQLDRFMFKVNIDFPDIEAISTI 190

Query: 192 V 192
           V
Sbjct: 191 V 191


>gi|320450068|ref|YP_004202164.1| ATP-dependent protease La [Thermus scotoductus SA-01]
 gi|320150237|gb|ADW21615.1| ATP-dependent protease La [Thermus scotoductus SA-01]
          Length = 818

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 48/214 (22%), Positives = 77/214 (35%), Gaps = 39/214 (18%)

Query: 55  DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA----------------A 98
             +LFVGPPG+GKT++A+ +A  LG  +   S   +    D+                  
Sbjct: 366 PILLFVGPPGVGKTSIAKSIAEALGRKYVRISLGGVRDESDIRGHRRTYIGAMPGRIIQG 425

Query: 99  LLTNLEDRDVLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKIN 150
           L        V  +DE+ +L I  +        E+L PA     +D  +G       V  +
Sbjct: 426 LRQAGTKNPVFLLDEVDKLGISYQGDPAAALLEVLDPAQNKEFVDHYLG-------VPFD 478

Query: 151 LSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACE 210
           LS    I        +  PL DR       ++ E E L  I +R   L    + +    E
Sbjct: 479 LSEVMFICTANFPQNIPAPLWDRMEAIEFTSYIEQEKL-EIAKRY--LLPRQMRETGLLE 535

Query: 211 IAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
             +           L+R +  +   A  + + RE
Sbjct: 536 GQVVITE-----AALMRLITHYTREAGVRQLERE 564


>gi|297582403|ref|YP_003698183.1| ATP-dependent metalloprotease FtsH [Bacillus selenitireducens
           MLS10]
 gi|297140860|gb|ADH97617.1| ATP-dependent metalloprotease FtsH [Bacillus selenitireducens
           MLS10]
          Length = 681

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 61/231 (26%), Positives = 88/231 (38%), Gaps = 16/231 (6%)

Query: 34  VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP----- 88
            E    LK   + A+  A     VL VGPPG GKT +A+ VA E GV F S SG      
Sbjct: 178 EEVVEFLKEPRKFAEIGARIPKGVLLVGPPGTGKTLIARAVAGEAGVPFFSISGSDFVEM 237

Query: 89  -VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDL--MVGEGPS 143
            V   A  +  L  N +     ++FIDEI  +       L    ++ +  L  ++ E   
Sbjct: 238 FVGVGASRVRDLFENAKKNAPCIIFIDEIDAVGRRRGAGLGGGHDEREQTLNQLLVEMDG 297

Query: 144 ARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGL 201
               +       LIAAT R  +L   L    RF   I +   +++  + +++  AK   L
Sbjct: 298 FGVNEG----IILIAATNRADILDPALLRPGRFDRQIMVGRPDVKGREAVLEVHAKNKPL 353

Query: 202 AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
           A   E           +      LL      A     K I  E  + A+ R
Sbjct: 354 ADDVELKTIAQRTPGFSGADLENLLNEAALVAARTDKKKIDMESVEEAIDR 404


>gi|163784726|ref|ZP_02179537.1| cell division protein FtsH [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880005|gb|EDP73698.1| cell division protein FtsH [Hydrogenivirga sp. 128-5-R1-1]
          Length = 628

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 59/258 (22%), Positives = 103/258 (39%), Gaps = 27/258 (10%)

Query: 26  TLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
            L++  G  E    +K  I          K    A   +LF G PG+GKT LA+ +A E 
Sbjct: 151 KLDDVAGMDEVKEEVKEIIDFLKDPQRFQKLGGRAPKGILFYGDPGVGKTLLAKAIAGEA 210

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEI-LYPAM 129
            V F S SG       V   A  +  L    +     ++FIDEI  +      +      
Sbjct: 211 NVPFISISGSDFVEMFVGVGAARVRDLFETAKKHAPCLVFIDEIDAVGRARSGVGFGGGH 270

Query: 130 EDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           ++ +  L  ++ E     S +       +IAAT R  +L   L    RF   I +   ++
Sbjct: 271 DEREQTLNQLLVELDGFDSNEG----IIVIAATNRPDILDPALLRPGRFDRQISVPKPDV 326

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           +    I++   K   + + D+   ++ + +RGTP  +G  L  V + A +  A+    ++
Sbjct: 327 KGRYEILKVHVKKKNIPLGDD--VDLMVIARGTPGFSGADLANVVNEAALLAARRRKEKV 384

Query: 246 ADAAL-LRLAIDKMGFDQ 262
           +       +    MG ++
Sbjct: 385 SMKEFEDAMDRIMMGLER 402


>gi|21242481|ref|NP_642063.1| cell division protein [Xanthomonas axonopodis pv. citri str. 306]
 gi|294665639|ref|ZP_06730916.1| cell division protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
 gi|21107929|gb|AAM36599.1| cell division protein [Xanthomonas axonopodis pv. citri str. 306]
 gi|292604585|gb|EFF47959.1| cell division protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
          Length = 648

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 52/246 (21%), Positives = 86/246 (34%), Gaps = 23/246 (9%)

Query: 26  TLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  EA   +   +       +  K   +    VL VGPPG GKT LA+ +A E 
Sbjct: 165 TFADVAGCDEAKEEVGELVDFLRDPTKFTKLGGKIPRGVLMVGPPGTGKTLLAKAIAGEA 224

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  +    +     ++FIDEI  +       L    +
Sbjct: 225 KVPFFSISGSDFVEMFVGVGASRVRDMFEQAKKHAPCIIFIDEIDAVGRHRGAGLGGGHD 284

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E       +       +IAAT R  +L   L    RF   + +   +++
Sbjct: 285 EREQTLNQLLVEMDGFEGGEG----VIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVK 340

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++   +   LA               +      L      FA     K +  +  
Sbjct: 341 GREQILRVHMRKLPLADDVVPMVIARGTPGFSGADLANLCNEAALFAARGSEKEVRMDHF 400

Query: 247 DAALLR 252
           D A  +
Sbjct: 401 DRARDK 406


>gi|10798790|dbj|BAB16439.1| replication factor C 36kDa subunit [Oryza sativa Japonica Group]
          Length = 367

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 44/239 (18%), Positives = 72/239 (30%), Gaps = 44/239 (18%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L S    +    +   RP++L +     +    +             L H+L  GPPG G
Sbjct: 29  LSSTPGGRAAPWVEKYRPQSLGDVAAHRDIVDTIDRL-----TNENRLPHLLLYGPPGTG 83

Query: 67  KTTLAQVVAR-----ELGVNFRSTSGPVIAKAGDLAALLTN-LEDRDVLF---------- 110
           KT+    VAR     + G      +         +   + +    R + F          
Sbjct: 84  KTSTILAVARKLYGSQYGNMILELNASDERGIDVVRQQIQDFASARSLSFGAKQSVKMVL 143

Query: 111 IDEIHRLSIIVEEILYPAMEDFQLD--LMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +DE   ++   +  L   +E         +      + +    SR T             
Sbjct: 144 LDEADAMTKDAQFALRRVIEKHTRSTRFALICNHVNKIIPALQSRCT------------- 190

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
               RF        +  E LK I+Q      GL V D     +   S G  R A  +L+
Sbjct: 191 ----RFRFAPLDGTHVRERLKHIIQ----SEGLDVDDGGLTALVRLSNGDMRKALNILQ 241


>gi|302816419|ref|XP_002989888.1| hypothetical protein SELMODRAFT_269585 [Selaginella moellendorffii]
 gi|300142199|gb|EFJ08901.1| hypothetical protein SELMODRAFT_269585 [Selaginella moellendorffii]
          Length = 805

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 46/256 (17%), Positives = 85/256 (33%), Gaps = 20/256 (7%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVARE 77
           + E+  G       L+  ++      E            VLF GPPG GKT LA+ +A E
Sbjct: 481 SWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANE 540

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
              NF S  GP +          ++  +          VLF DE+  ++      +  A 
Sbjct: 541 CQANFISVKGPELLTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIATQRGSSVGDA- 599

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                D ++ +  +            +I AT R  ++   L    R    I +   +   
Sbjct: 600 -GGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEAS 658

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
              I Q   + + L+   +           +      + +R   +A   + +    +   
Sbjct: 659 RLRIFQAALRKSPLSKDVDLEALGRYTQGFSGADITEICQRACKYAIRENIEKDIEKERR 718

Query: 248 AALLRLAIDKMGFDQL 263
            A    A+D+   D++
Sbjct: 719 RADNPEAMDEDEVDEI 734



 Score = 54.3 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 40/172 (23%), Positives = 63/172 (36%), Gaps = 29/172 (16%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------------VLFVGPPGLGKTTLA 71
            L+E  G  +     K   +  +     L H              +L  GPPG GKT +A
Sbjct: 203 RLDE-VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIA 261

Query: 72  QVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEE 123
           + VA E G  F   +GP I          +L       E     ++FIDEI  ++   E+
Sbjct: 262 RAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREK 321

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
                 +      +V +  +      + S   ++ AT R   +   L+ RFG
Sbjct: 322 -----TQGEVERRIVSQLLTLMDGLKSRSHVIVMGATNRPNSIDPALR-RFG 367


>gi|300121999|emb|CBK22573.2| unnamed protein product [Blastocystis hominis]
          Length = 652

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 51/245 (20%), Positives = 78/245 (31%), Gaps = 21/245 (8%)

Query: 25  RTLEEFTGQVEACSNLKVFI------EAAKARAEALDH-VLFVGPPGLGKTTLAQVVARE 77
               +  G  +    LK+ +       A  +      H VL  GPPG GKT +A+ VA E
Sbjct: 101 TRFSDVVGIEDNIEELKIIVNYLRDPSAFSSLGATAPHGVLLTGPPGTGKTLMARAVAGE 160

Query: 78  LGVNFRSTSGPVIA------KAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
            GV F   S            A  +  L          ++FIDEI  L            
Sbjct: 161 AGVPFFFVSASEFEDIFVGMGARRVRELFNVARRSAPCIIFIDEIDSLENRSTLNFGSGS 220

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
               ++ ++ E       +  L    ++AAT     L   L    RF + I+    + ED
Sbjct: 221 SYQTVNQLLNEIGGFHGNEGIL----VMAATNFAEQLDPALTRAGRFDVKIQTTLPKFED 276

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
              ++Q   +    A   +           +      LLR             IT +  D
Sbjct: 277 RLKLIQMKTRKMLFASDVDLERLATQLVGCSGAEIDTLLRITAMRVLADGRFQITWDDLD 336

Query: 248 AALLR 252
            +  R
Sbjct: 337 QSRDR 341


>gi|294626636|ref|ZP_06705233.1| cell division protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|292599056|gb|EFF43196.1| cell division protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
          Length = 648

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 52/246 (21%), Positives = 86/246 (34%), Gaps = 23/246 (9%)

Query: 26  TLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  EA   +   +       +  K   +    VL VGPPG GKT LA+ +A E 
Sbjct: 165 TFADVAGCDEAKEEVGELVDFLRDPTKFTKLGGKIPRGVLMVGPPGTGKTLLAKAIAGEA 224

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  +    +     ++FIDEI  +       L    +
Sbjct: 225 KVPFFSISGSDFVEMFVGVGASRVRDMFEQAKKHAPCIIFIDEIDAVGRHRGAGLGGGHD 284

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E       +       +IAAT R  +L   L    RF   + +   +++
Sbjct: 285 EREQTLNQLLVEMDGFEGGEG----VIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVK 340

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++   +   LA               +      L      FA     K +  +  
Sbjct: 341 GREQILRVHMRKLPLADDVVPMVIARGTPGFSGADLANLCNEAALFAARGSEKEVRMDHF 400

Query: 247 DAALLR 252
           D A  +
Sbjct: 401 DRARDK 406


>gi|78485157|ref|YP_391082.1| ATP-dependent metalloprotease FtsH [Thiomicrospira crunogena XCL-2]
 gi|78363443|gb|ABB41408.1| membrane protease FtsH catalytic subunit [Thiomicrospira crunogena
           XCL-2]
          Length = 651

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 91/246 (36%), Gaps = 23/246 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAK-------ARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
            L++  G  EA   +   ++  +               VL VGPPG GKT LA+ +A E 
Sbjct: 156 NLDDVAGADEAKEEVGEIVDFLRDPEKYQNLGGNIPRGVLMVGPPGTGKTLLAKAIAGEA 215

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  +    +     ++FIDEI  +       +    +
Sbjct: 216 KVPFFSISGSDFVEMFVGVGASRVRDMFEQAKAHSPCIIFIDEIDAVGRSRGAGMGGGND 275

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  M+ E       +       +IAAT R  +L   L    RF   + +   ++ 
Sbjct: 276 EREQTLNQMLVEMDGFEGNEG----VIVIAATNRADVLDPALLRPGRFDRQVTVGLPDVR 331

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++   +   LA   + A         +      L+     FA   + + +T++  
Sbjct: 332 GREQILKVHMRKVPLADDVKPALIARGTPGFSGADLANLVNEAALFAARNNDRLVTQKHF 391

Query: 247 DAALLR 252
           + A  +
Sbjct: 392 EKAKDK 397


>gi|87302738|ref|ZP_01085549.1| FtsH ATP-dependent protease-like protein [Synechococcus sp. WH
           5701]
 gi|87282621|gb|EAQ74579.1| FtsH ATP-dependent protease-like protein [Synechococcus sp. WH
           5701]
          Length = 641

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 62/273 (22%), Positives = 101/273 (36%), Gaps = 23/273 (8%)

Query: 27  LEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVARELG 79
            ++  G  EA  +L+  +   K         A+    VL VGPPG GKT LA+ +A E G
Sbjct: 182 FDDVAGVEEAKEDLEEVVTFLKQPERFTSVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG 241

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMED 131
           V F S SG           A  +  L    ++    ++FIDEI  +       +    ++
Sbjct: 242 VPFFSLSGSEFVEMFVGVGASRVRDLFKRAKENSPCLIFIDEIDAVGRQRGAGIGGGNDE 301

Query: 132 FQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            +  L  ++ E           S   +IAAT R  +L + L    RF   + ++  +I+ 
Sbjct: 302 REQTLNQLLTEMDGFEGN----SGIIIIAATNRPDVLDSALMRPGRFDRQVSVDAPDIKG 357

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
             +I++  ++   LA               T      LL            +  T    D
Sbjct: 358 RLSILKVHSRNKKLAEDVSLEAVARRTPGFTGADLANLLNEAAILTARRRKEATTLAEID 417

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV 280
            A+ R+     G    D R   +IA +  G  +
Sbjct: 418 DAVDRVIAGMEGKPLTDGRSKRLIAYHEVGHAL 450


>gi|317009270|gb|ADU79850.1| DNA polymerase III subunits gamma and tau [Helicobacter pylori
           India7]
          Length = 573

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 78/256 (30%), Gaps = 59/256 (23%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA------- 75
           RP+   E  GQ      L + ++  +         LF G  G GKT+ +++ A       
Sbjct: 9   RPKHFSELVGQESVAKTLSLALDNQRLANAY----LFSGLRGSGKTSSSRIFARALMCEE 64

Query: 76  -----------------RELGVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFID 112
                                ++     G       D+  L+             +  ID
Sbjct: 65  GPKAVPCDTCIQCQSALNNHHIDIIEMDGASNRGIDDVRNLIEQTRYKPSFGRYKIFIID 124

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H  +      L   +E+                    S    + ATT    L   +  
Sbjct: 125 EVHMFTTEAFNALLKTLEE------------------PPSHVKFLLATTDALKLPATILS 166

Query: 173 R---FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           R   F          I  LKTI++       ++    A  ++A   +G+ R    LL + 
Sbjct: 167 RTQHFRFKKIPENSVISHLKTILE----KEQVSYETSALEKLAHSGQGSLRDTITLLEQA 222

Query: 230 RDFAEVAHAKTITREI 245
            ++ + A  ++   E+
Sbjct: 223 INYCDNAITESKVAEM 238


>gi|295664729|ref|XP_002792916.1| AAA family ATPase [Paracoccidioides brasiliensis Pb01]
 gi|226278437|gb|EEH34003.1| AAA family ATPase [Paracoccidioides brasiliensis Pb01]
          Length = 810

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 78/227 (34%), Gaps = 30/227 (13%)

Query: 26  TLEEFTGQVEACSNLK-----VFIEAAKARA--EALDHVLFVGPPGLGKTTLAQVVAREL 78
             ++  G   A + LK      F+         E    +L  GPPG GKT LA+ VA E 
Sbjct: 570 NWDDVAGLEIAKNALKEAVVYPFLRPDLFSGLREPARGMLLFGPPGTGKTMLARAVATES 629

Query: 79  GVNFRSTSGPVIAKA--GDLAALLTNLEDR------DVLFIDEIHRL------------S 118
              F S S   +     G+   L+  L          ++F+DEI  L            S
Sbjct: 630 QSTFFSVSASSLTSKWHGESEKLVRALFGLAKCMAPSIIFVDEIDSLLSARSGSGEAEVS 689

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
              +        D Q      E         + SR  ++AAT     +    + RF    
Sbjct: 690 RRTKTEFLIQWSDLQRAAAGREQSEKEKRGGDPSRVLVLAATNLPWDIDEAARRRFVRRQ 749

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
            +   E E  KT ++R   L      + +A +I +  + T  I   L
Sbjct: 750 YIPLPEPEVRKTQIER---LLSHQKHELSAEDIEVLVKDTDAIITAL 793


>gi|20092335|ref|NP_618410.1| cell division control protein 48 AAA family protein [Methanosarcina
           acetivorans C2A]
 gi|19917582|gb|AAM06890.1| cell division control protein 48 AAA family protein [Methanosarcina
           acetivorans C2A]
          Length = 786

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 47/200 (23%), Positives = 72/200 (36%), Gaps = 23/200 (11%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVAR 76
            T E+  G  +    ++  IE      E   H        V+  GPPG GKT +A+ VA 
Sbjct: 195 TTYEDIGGLGQEIMRVREIIEMPMKHPELFAHLNIEPPKGVILYGPPGTGKTLIAKAVAN 254

Query: 77  ELGVNFRSTSGPVIAKA------GDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPA 128
           E G +F   +GP I           L  +          V+FIDEI  ++   E +    
Sbjct: 255 ESGASFHYIAGPEIVGKFYGESEERLRKIFEEATQDAPSVIFIDEIDSIAPKRENVTGEV 314

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
                  L+          +       +I AT RV  +   L+   RF   I +   + +
Sbjct: 315 ERRVVAQLLTLLDGMEERGQ-----VVVIGATNRVDAIDPALRRPGRFDREIHIGVPDTK 369

Query: 187 DLKTIVQRGAKLTGLAVTDE 206
           D   I+Q   +   +   DE
Sbjct: 370 DRYEILQIHTRGMPIEKDDE 389



 Score = 45.1 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 53/244 (21%), Positives = 85/244 (34%), Gaps = 20/244 (8%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLT 101
           K   +A   +L  GPPG GKT +AQ VA+E   NF S  GP +           +     
Sbjct: 537 KLGIKAPKGILLYGPPGTGKTLIAQAVAKESNANFISVKGPEMFSKWLGESEKAIRETFK 596

Query: 102 NLEDRD--VLFIDEIHRLSIIV-EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIA 158
                   V+F DEI  ++ +   E       +  L+ ++ E          L    +IA
Sbjct: 597 KARQVAPCVVFFDEIDSIAAMQGMESTDSRTSERVLNQLLTE----MDGLETLKDVVIIA 652

Query: 159 ATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSR 216
           AT R  LL   +    RF   + +   + +    I +   + T LA   +      +   
Sbjct: 653 ATNRPNLLDPAIMRPGRFDRLVYVGAPDRKGRMKIFKIHTRNTPLAEDVDLENLANITEG 712

Query: 217 GTPRIAGRLLRRVRDFAEVAHAKTITRE--IADAALLRLAIDKMGFDQLDLRYLTMIARN 274
                   + R    FA   +      E      AL ++   K   ++   ++   I   
Sbjct: 713 YVGADIEAVCREAVMFALRENFDVEAIEMRHFREALKKV---KPTINENIAQFYEKIEEQ 769

Query: 275 FGGG 278
           F GG
Sbjct: 770 FKGG 773


>gi|78047321|ref|YP_363496.1| cell division protein FtsH (ATP-dependent zinc metallopeptidase)
           [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|325928792|ref|ZP_08189961.1| membrane protease FtsH catalytic subunit [Xanthomonas perforans
           91-118]
 gi|78035751|emb|CAJ23442.1| cell division protein FtsH (ATP-dependent zinc metallopeptidase)
           [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|325540873|gb|EGD12446.1| membrane protease FtsH catalytic subunit [Xanthomonas perforans
           91-118]
          Length = 648

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 52/246 (21%), Positives = 86/246 (34%), Gaps = 23/246 (9%)

Query: 26  TLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  EA   +   +       +  K   +    VL VGPPG GKT LA+ +A E 
Sbjct: 165 TFADVAGCDEAKEEVGELVDFLRDPTKFTKLGGKIPRGVLMVGPPGTGKTLLAKAIAGEA 224

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  +    +     ++FIDEI  +       L    +
Sbjct: 225 KVPFFSISGSDFVEMFVGVGASRVRDMFEQAKKHAPCIIFIDEIDAVGRHRGAGLGGGHD 284

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E       +       +IAAT R  +L   L    RF   + +   +++
Sbjct: 285 EREQTLNQLLVEMDGFEGGEG----VIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVK 340

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++   +   LA               +      L      FA     K +  +  
Sbjct: 341 GREQILRVHMRKLPLAEDVVPMVIARGTPGFSGADLANLCNEAALFAARGSEKEVRMDHF 400

Query: 247 DAALLR 252
           D A  +
Sbjct: 401 DRARDK 406


>gi|66806375|ref|XP_636910.1| cell division cycle protein 48 [Dictyostelium discoideum AX4]
 gi|4996891|gb|AAB40928.2| cell division cycle protein 48 [Dictyostelium discoideum]
 gi|60465285|gb|EAL63377.1| cell division cycle protein 48 [Dictyostelium discoideum AX4]
          Length = 793

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 54/264 (20%), Positives = 89/264 (33%), Gaps = 48/264 (18%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARA--------EALDHVLFVGPPGLGKTTLAQVVARELG 79
           ++  G  +    ++  +E              +    +L  GPPG GKT +A+ VA E G
Sbjct: 202 DDIGGVRKQLGQIRELVELPLRHPQLFKNIGVKPPKGILLYGPPGCGKTMIARAVANETG 261

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIV---EEILYPA 128
             F   +GP I          +L       E     ++FIDEI  ++      +  +   
Sbjct: 262 AFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTQGEVERR 321

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED- 187
           +    L LM G    A  +        ++ AT R   +   L+ RFG   R     I D 
Sbjct: 322 IVSQLLTLMDGLKSRAHVI--------VMGATNRPNSIDPALR-RFGRFDREIDITIPDA 372

Query: 188 -----LKTIVQRGAKLTGLAVTDEAACEIAMRSRGT-----PRIAGRLLRRVRDF----- 232
                +  I  +  KL      +  A E                A + +R   D      
Sbjct: 373 TGRLEIMRIHTKNMKLDETVDLEAVANETHGYVGADLAALCTESALQCIREKMDVIDLED 432

Query: 233 ----AEVAHAKTITREIADAALLR 252
               AE+  + ++T++    AL  
Sbjct: 433 ETISAEILESMSVTQDHFRTALTL 456



 Score = 53.5 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 50/258 (19%), Positives = 84/258 (32%), Gaps = 22/258 (8%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVAR 76
            T E+  G       L+  ++      E            VLF GPPG GKT LA+ +A 
Sbjct: 472 TTWEDIGGLEGVKRELRETVQYPVEHPEKFRKFGMQPSKGVLFYGPPGCGKTLLAKAIAN 531

Query: 77  ELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPA 128
           E   NF S  GP +     G+  A +  L D+       VLF DE+  ++         A
Sbjct: 532 ECQANFISIKGPELLTMWFGESEANVRELFDKARQAAPCVLFFDELDSIARSRGSSQGDA 591

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
                 D ++ +  +            +I AT R  ++   +    R    I +   ++ 
Sbjct: 592 GGAG--DRVINQILTEMDGMNAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDLP 649

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
               I++     + +A   +           +      + +R    A            +
Sbjct: 650 SRVAILKACLNKSPVAKDVDLEFLGQKTQGFSGADLTEICQRACKLAI--RESIEKDIES 707

Query: 247 DAALLRLAIDKMGFDQLD 264
             A       KM  D +D
Sbjct: 708 TKARQESGDTKMEDDSVD 725


>gi|327542594|gb|EGF29068.1| methanol dehydrogenase regulator (moxR)-like protein
           [Rhodopirellula baltica WH47]
          Length = 368

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 41/207 (19%), Positives = 65/207 (31%), Gaps = 25/207 (12%)

Query: 30  FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPV 89
             GQ E    L +       R     H +  G PGL KT +   +A    ++FR      
Sbjct: 57  IVGQEEVAEQLLI---GILCRG----HCILQGMPGLAKTMMVSTLASLTDLSFRRVQFTP 109

Query: 90  IAKAGDLAALLTNLEDRD----------------VLFIDEIHRLSIIVEEILYPAMEDFQ 133
               GD+       ED                  V+  DEI+R     +  L  AM++ Q
Sbjct: 110 DLMPGDITGTEVLEEDHTTGKRIFRFVEGPLFGNVILADEINRTPPKTQSALLEAMQEHQ 169

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           L  + G+          L+       T     L     DRF + I + +   ++ + I +
Sbjct: 170 LT-VCGKTYKLPDPFFVLAT-QNPVETEGTYPLPEAQLDRFLLKIHVRYPTRDEEREIAR 227

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPR 220
           R               E   + +   R
Sbjct: 228 RQTTDYSFETKTVLDVEQISQMQSLVR 254


>gi|224119534|ref|XP_002318098.1| predicted protein [Populus trichocarpa]
 gi|222858771|gb|EEE96318.1| predicted protein [Populus trichocarpa]
          Length = 965

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 81/224 (36%), Gaps = 24/224 (10%)

Query: 21  LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80
             RP++ +E  GQ     +L   I  +K R  +L   LF GP G GKT+ +++ A  L  
Sbjct: 297 KFRPKSFDELVGQNVVVRSLLGAI--SKGRITSL--YLFHGPRGTGKTSASRIFAAALNC 352

Query: 81  NFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSII-------VEEILYPAMEDFQ 133
             R           +  A  +    RDV  +D + R++             + P    F+
Sbjct: 353 LSREYKP--CGVCRECVAFFSG-RSRDVKEVDSM-RINRAKGIRSLIKNASMPPISSRFK 408

Query: 134 LDLM------VGE--GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
           + ++       GE  G    S++        +  T  + +L      R          + 
Sbjct: 409 VFIVDECHLLHGETWGTVLNSLENLSQNVVFVMITPELDMLPRSAVSRSQKYHFPKIKDA 468

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           + +   ++       L     A   IA +S G+ R A  +L ++
Sbjct: 469 D-IAGRLRNICVEEDLDFDQVALDFIAAKSSGSLRDAEIMLDQL 511


>gi|193213377|ref|YP_001999330.1| ATP-dependent metalloprotease FtsH [Chlorobaculum parvum NCIB 8327]
 gi|193086854|gb|ACF12130.1| ATP-dependent metalloprotease FtsH [Chlorobaculum parvum NCIB 8327]
          Length = 654

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 59/248 (23%), Positives = 94/248 (37%), Gaps = 27/248 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAA-------KARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  EA   L+  +E         K   +    VL +GPPG GKT LA+ +A E 
Sbjct: 207 TFKDVAGVNEAVEELQETVEFLMNPEKFEKIGGKIPKGVLLLGPPGTGKTLLAKAIAGEA 266

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  L    +     ++FIDEI  +       L    +
Sbjct: 267 KVPFFSISGADFVEMFVGVGAARVRDLFETAKKNSPCIVFIDEIDAVGRSRGAGLGGGHD 326

Query: 131 DFQLD----LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
           + +      L+  +G +AR   I       IAAT R  +L + L    RF   I ++  +
Sbjct: 327 EREQTLNQLLVEMDGFTARDNVIL------IAATNRPDVLDSALLRPGRFDRQITIDKPD 380

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           I   K I++   + T L  + +           +      L+      A   +   IT +
Sbjct: 381 IRGRKAILEIHTRKTPLDSSVDLETIAKSTPGFSGADLANLVNEAALLASRYNQTEITAD 440

Query: 245 IADAALLR 252
             + A  +
Sbjct: 441 NFEEARDK 448


>gi|159041123|ref|YP_001540375.1| AAA family ATPase, CDC48 subfamily protein [Caldivirga
           maquilingensis IC-167]
 gi|157919958|gb|ABW01385.1| AAA family ATPase, CDC48 subfamily [Caldivirga maquilingensis
           IC-167]
          Length = 735

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 48/197 (24%), Positives = 74/197 (37%), Gaps = 25/197 (12%)

Query: 16  DADISLLR-PR-TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGL 65
           +  +  +R PR T E+     EA   ++  +E      E   H        VL +GPPG 
Sbjct: 168 EKPVENIRIPRVTWEDIGDLEEAKQKIRELVELPLKHPELFRHLGIEPPKGVLLIGPPGT 227

Query: 66  GKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRL 117
           GKT LA+ VA E    F S +GP I           L  +    +     ++FIDEI  +
Sbjct: 228 GKTLLAKAVANEADAYFVSINGPEIVSKYYGESEARLREIFDEAKRNAPAIIFIDEIDSI 287

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFG 175
           +   EE+     +     L+               +  +I AT R   +   L+   RF 
Sbjct: 288 APKREEVTGEVEKRIVAQLLT-----LMDGLQERGQVVVIGATNRPDAVDPALRRPGRFD 342

Query: 176 IPIRLNFYEIEDLKTIV 192
             I +N  +      I+
Sbjct: 343 REIWINPPDTRGRYEIL 359



 Score = 52.4 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 45/211 (21%), Positives = 74/211 (35%), Gaps = 25/211 (11%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIE--------AAKARAE 52
           M     ++   + +   ++  +R     +  G  EA   L+  +E               
Sbjct: 434 MDAMREIIPSALREIYIEVPKVR---WSDVGGLEEAKQELREAVEWPLKYPNRFKIMGIR 490

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR 106
               +L  GPPG GKT LA+ VA E G NF +  GP I           +  +       
Sbjct: 491 PPKGILLFGPPGTGKTLLAKAVANESGANFIAVRGPEILSKWFGESEKAIREIFKKARMA 550

Query: 107 D--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164
              V+F DEI  ++      L    +   +D +V +  +       L    +I AT R  
Sbjct: 551 APCVVFFDEIDAIAPARGYTL----DTSAMDRIVAQLLAEMDGIAALENVVVIGATNRPD 606

Query: 165 LLTNPLQD--RFGIPIRLNFYEIEDLKTIVQ 193
           +L   L    RF   I +   +      I++
Sbjct: 607 MLDPALLRPGRFDRIIYVPPPDKPSRFEILK 637


>gi|114674808|ref|XP_001143873.1| PREDICTED: lon protease homolog, mitochondrial isoform 3 [Pan
           troglodytes]
 gi|114674810|ref|XP_001143950.1| PREDICTED: protease, serine, 15 isoform 4 [Pan troglodytes]
 gi|114674812|ref|XP_512302.2| PREDICTED: protease, serine, 15 isoform 5 [Pan troglodytes]
          Length = 959

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 72/192 (37%), Gaps = 33/192 (17%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI  ++ R      +L F GPPG+GKT++A+ +AR L   +   S
Sbjct: 489 EDHYGMEDVKKRILEFIAVSQLRGSTQGKILCFYGPPGVGKTSIARSIARALNREYFRFS 548

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ I E+ ++    +        
Sbjct: 549 VGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLILIHEVDKIGRGYQGDPSSALL 608

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V ++LS+   I        +  PL+DR  + I ++ 
Sbjct: 609 ELLDPEQNANFLD-------HYLDVPVDLSKVLFICTANVTDTIPEPLRDRMEM-INVSG 660

Query: 183 YEIEDLKTIVQR 194
           Y  ++   I +R
Sbjct: 661 YVAQEKLAIAER 672


>gi|15897214|ref|NP_341819.1| proteasome-activating nucleotidase [Sulfolobus solfataricus P2]
 gi|284174460|ref|ZP_06388429.1| proteasome-activating nucleotidase [Sulfolobus solfataricus 98/2]
 gi|20532213|sp|Q980M1|PAN_SULSO RecName: Full=Proteasome-activating nucleotidase; Short=PAN;
           AltName: Full=Proteasomal ATPase; AltName:
           Full=Proteasome regulatory ATPase; AltName:
           Full=Proteasome regulatory particle
 gi|13813411|gb|AAK40609.1| AAA family ATPase [Sulfolobus solfataricus P2]
 gi|261601882|gb|ACX91485.1| 26S proteasome subunit P45 family [Sulfolobus solfataricus 98/2]
          Length = 393

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 50/274 (18%), Positives = 87/274 (31%), Gaps = 25/274 (9%)

Query: 13  SQEDADISLL----RPR-TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLF 59
            +ED  +  +    RP  T  E  G  E    L+  +E      E            VL 
Sbjct: 114 QKEDPIVKTMEIIERPNVTYSEIGGLEEQIRELREVVELPLKNPEIFREIGVEPPKGVLL 173

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFI 111
            GPPG GKT LA+ VA E    F                A  +  L    + +   ++FI
Sbjct: 174 YGPPGTGKTMLAKAVATESNAVFIHVVASEFAQKFVGEGARIVRELFEMAKRKAPSIIFI 233

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DEI  +     +I      + ++   + +  +       L    +IAAT R+ +L   L 
Sbjct: 234 DEIDAIGAKRIDI--GTSGEREIQRTLMQLLAELDGFDPLDNVKIIAATNRIDILDPALL 291

Query: 172 D--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
              RF   I +   + +    I     K   +           +    +      +    
Sbjct: 292 RPGRFDRIIEVPLPDFKGRTEIFNIYLKKMKIEDNINLELLSQLTEGFSGADIKNVCVEA 351

Query: 230 RDFAEVAHAKTITREIADAALLRLAIDKMGFDQL 263
              A       +T      A+ ++ + +   + +
Sbjct: 352 AYMAIRDGRNKVTMNDLVEAINKINVKRNKMESM 385


>gi|302803690|ref|XP_002983598.1| hypothetical protein SELMODRAFT_624 [Selaginella moellendorffii]
 gi|300148841|gb|EFJ15499.1| hypothetical protein SELMODRAFT_624 [Selaginella moellendorffii]
          Length = 516

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 57/261 (21%), Positives = 84/261 (32%), Gaps = 32/261 (12%)

Query: 5   EGLLSRNVSQEDADI--SLLRPRTLEEFT------------GQVEACSNLKVFIE----- 45
           E   S +V +ED ++    +RP  + E              GQ      LK  +E     
Sbjct: 232 ESASSLSVGREDFELASEKIRPSAMREVILEVPKVRWSDIGGQSAVKQQLKEIVEWPHKH 291

Query: 46  ---AAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--------AKAG 94
               A+        VL  GPPG  KT +A+ VA E G+NF +  GP +         KA 
Sbjct: 292 QDSFARIGTTPPRGVLLYGPPGCSKTMMARAVAAETGLNFIAVKGPELFSKWVGESEKAV 351

Query: 95  DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRF 154
                        V+F DEI  L+I               D ++ +           +  
Sbjct: 352 RALFARAKAAAPSVVFFDEIDGLAITRSSGGGRTDGISVEDRVMSQLLIEMDGVSLRNGV 411

Query: 155 TLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIA 212
           ++IAAT R   L   L    RF   I +   +    + I +   K T            +
Sbjct: 412 SVIAATNRPDKLDPALLRPGRFDRLIYVGPPDRAARQQIFEIHMKNTPCKADVSVDVLAS 471

Query: 213 MRSRGTPRIAGRLLRRVRDFA 233
                T      + R     A
Sbjct: 472 YTESYTGADIAAVCREAALAA 492



 Score = 50.1 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 34/106 (32%), Positives = 45/106 (42%), Gaps = 13/106 (12%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRST 85
           TL+E   Q        +     K        VL  GPPG GKT+LAQ VA+E GV     
Sbjct: 14  TLKEIV-QYSLLKPETLARYCLKRTKG----VLLYGPPGTGKTSLAQAVAKEAGVKMLVI 68

Query: 86  SGPVI------AKAGDLAAL--LTNLEDRDVLFIDEIHRLSIIVEE 123
           +GP I           + A+  L   E   V+FIDE+  ++    E
Sbjct: 69  NGPEIVTEYHGESEAAMKAIFDLAAREAPSVVFIDELDAITPQRRE 114


>gi|255593034|ref|XP_002535776.1| conserved hypothetical protein [Ricinus communis]
 gi|223521997|gb|EEF26607.1| conserved hypothetical protein [Ricinus communis]
          Length = 297

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 76/206 (36%), Gaps = 36/206 (17%)

Query: 11  NVSQEDADISLLRPRTL--EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGK 67
           N S E+ D+  LR + +  E+  G  +    +  FI   K R  +   ++   GPPG+GK
Sbjct: 63  NYSDENFDV--LRAQKILDEDHYGLTDVKERILEFIAVGKLRGTSQGKIICLSGPPGVGK 120

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED----------------RDVLFI 111
           T++ + +AR L   F   S   ++   ++                           ++ I
Sbjct: 121 TSIGRSIARALNRKFFRFSVGGLSDVAEIKGHRRTYIGAMPGKMVQCLKNVGTANPLVLI 180

Query: 112 DEIHRLSI--------IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
           DEI +L           + E+L P      LD           V I+LS+   +     V
Sbjct: 181 DEIDKLGRGHAGDPASALLELLDPEQNANFLD-------HYLDVPIDLSKVLFVCTANVV 233

Query: 164 GLLTNPLQDRFGIPIRLNFYEIEDLK 189
            ++  PL DR  +     +   E + 
Sbjct: 234 DMIPGPLLDRMEVIAIAGYITDEKMH 259


>gi|170593977|ref|XP_001901740.1| AAA ATPase [Brugia malayi]
 gi|158590684|gb|EDP29299.1| AAA ATPase, putative [Brugia malayi]
          Length = 353

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 74/210 (35%), Gaps = 13/210 (6%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI-----AKAGDLAALLTNLEDR- 106
               VL  GPPG GKT LA+V+AR     F +     +      ++  LA  + ++  + 
Sbjct: 121 PPKGVLLYGPPGCGKTLLAKVIARAANARFINLQVSSLCDKWYGESQKLADAVFSVAQKF 180

Query: 107 --DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164
              ++FIDEI           + A    +   M      A S         ++ AT R  
Sbjct: 181 QPTIIFIDEIDSFLRDRNTQDHEATAMMKAQFMCLWDGFASSDDA----IVVLGATNRPN 236

Query: 165 LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGR 224
            + + +  R      +    +E    I++   +   + + D     IA  +        +
Sbjct: 237 DVDSAILRRMPARFYVPLPSLESRADILKVLLRDQPV-MPDINFERIAEYANELSGSDLK 295

Query: 225 LLRRVRDFAEVAHAKTITREIADAALLRLA 254
            + R+   + V  A    +++ +     + 
Sbjct: 296 EVCRLAVLSRVKDAFIKGKDLNNETTRMIR 325


>gi|158321006|ref|YP_001513513.1| ATP-dependent metalloprotease FtsH [Alkaliphilus oremlandii OhILAs]
 gi|158141205|gb|ABW19517.1| ATP-dependent metalloprotease FtsH [Alkaliphilus oremlandii OhILAs]
          Length = 533

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 60/257 (23%), Positives = 96/257 (37%), Gaps = 43/257 (16%)

Query: 24  PR-TLEEFTGQVEACSNLKVFIEAA-------KARAEALDHVLFVGPPGLGKTTLAQVVA 75
           P+ T E+  G  E    L   I+         K  A+    +LF GPPG GKT LA  VA
Sbjct: 90  PKVTFEDVAGLEEIKEELSEVIDFINQSEKYHKMGAKIPKGILFYGPPGTGKTLLASAVA 149

Query: 76  RELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYP 127
            E    F S SG           A  +  L          V+FIDEI  +          
Sbjct: 150 GETKSAFFSASGSEFVEKYVGVGAKRVRTLFEKARKEAPSVIFIDEIDAIGAKR------ 203

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRF------TLIAATTRVGLLTNPLQD--RFGIPIR 179
                 +D    +  +   + + L  F       +IAAT R+ LL   L    RF   + 
Sbjct: 204 -----HIDSNNEKDQTLNQLLVELDGFNTDQTVVVIAATNRLDLLDEALLRPGRFDRHMY 258

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV---- 235
           ++   ++  + I+    K+       + +  IA  +R T  ++G  +  V + A +    
Sbjct: 259 ISNPNVKAREEIL----KVHTKNKPLDPSINIADLARKTHGMSGAHISNVANEAAIIAVR 314

Query: 236 AHAKTITREIADAALLR 252
            + + I+    + A+ R
Sbjct: 315 ENQQIISISHFEQAIER 331


>gi|167999907|ref|XP_001752658.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162696189|gb|EDQ82529.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 901

 Score = 55.9 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 90/248 (36%), Gaps = 45/248 (18%)

Query: 11  NVSQEDADISLLRPRTL--EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGK 67
           + S+E+ D++  R + +  EE  G  +    +  FI   + R +    ++   GPPG+GK
Sbjct: 321 HFSEENFDVN--RAQKILDEEHYGLEDVKERILEFIAVGRLRGKTQGKIICLAGPPGVGK 378

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLED----------------RDVLFI 111
           T++ + +A  L   F   S   +    ++                           ++ I
Sbjct: 379 TSIGRSIAHALNRQFYRFSVGGLGDVAEIKGHRRTYVGAMPGKMVQCLKATGTSNPLVLI 438

Query: 112 DEIHRLSI--------IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
           DEI +L           + E+L P      LD           V I+LS+   +     V
Sbjct: 439 DEIDKLGRGHSGDPASALLELLDPEQNANFLD-------HYLDVPIDLSKVLFVCTANLV 491

Query: 164 GLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAG 223
             +  PL DR  +   + +   E  KT + RG         ++AA E +        ++ 
Sbjct: 492 ENIPGPLLDRMEVIRLVGYITAE--KTHIARG-------YLEKAAREGSGVEAEQVDLSD 542

Query: 224 RLLRRVRD 231
             L  + +
Sbjct: 543 GALHTLIE 550


>gi|148378007|ref|YP_001256883.1| cell division protein ftsH-like protein [Mycoplasma agalactiae PG2]
 gi|148292053|emb|CAL59445.1| Cell division protein ftsH homolog [Mycoplasma agalactiae PG2]
          Length = 675

 Score = 55.9 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 52/270 (19%), Positives = 97/270 (35%), Gaps = 20/270 (7%)

Query: 1   MMDREGLLSRNVSQEDADISLLRP-RTLEEFTGQVEACSNLKVFIEAAKA------RAEA 53
           MM R   +   +  E      ++  +T ++  G  EA   +K  ++  K           
Sbjct: 171 MMKRSMNMIGAIGDEKNPAQKIKSDKTFKDVAGNKEAVEEIKEIVDYLKNPKKYEIAGAR 230

Query: 54  LDH-VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR 106
           + H +L  GPPG GKT LA+  A E  V F   S        V   A  +  ++      
Sbjct: 231 MPHGILLGGPPGTGKTLLAKATAGEANVPFYFISASNFVEMFVGLGAKRVRTVVDEARKN 290

Query: 107 --DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164
              ++FIDE+  +       +    ++ +  L   +         + +     AAT R  
Sbjct: 291 APAIIFIDELDAIGRTRGSGIGGGHDEREQTL--NQLLVEMDGMKDNNGILFFAATNRTD 348

Query: 165 LLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
           +L   L    RF   I +   ++++ + I+   AK   +++    A         +    
Sbjct: 349 VLDPALTRPGRFDRTITVGLPDVKEREEILNLHAKGKRVSLNVNLAQVAKRTPGYSGAQL 408

Query: 223 GRLLRRVRDFAEVAHAKTITREIADAALLR 252
             ++      A    ++ I R+  D A+ R
Sbjct: 409 ENVINEAGLLAVRRDSEIIERDDIDEAIDR 438


>gi|22298276|ref|NP_681523.1| cell division protein [Thermosynechococcus elongatus BP-1]
 gi|22294455|dbj|BAC08285.1| cell division protein [Thermosynechococcus elongatus BP-1]
          Length = 631

 Score = 55.9 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 62/273 (22%), Positives = 97/273 (35%), Gaps = 23/273 (8%)

Query: 27  LEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVARELG 79
            ++  G  EA   L+  +   K         A     VL VGPPG GKT LA+ +A E G
Sbjct: 175 FDDVAGVDEAKEELQEVVTFLKKPEKFTAVGARIPKGVLLVGPPGTGKTMLAKAIAGEAG 234

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMED 131
           V F S SG           A  +  L    ++    ++FIDEI  +       +    ++
Sbjct: 235 VPFFSISGSEFVEMFVGVGASRVRDLFRKAKENAPCLIFIDEIDAVGRQRGAGIGGGNDE 294

Query: 132 FQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            +  L  ++ E               +IAAT R  +L   L    RF   + ++  +I+ 
Sbjct: 295 REQTLNQLLTEMDGFEGNTG----IIVIAATNRPDVLDAALLRPGRFDRQVIVDAPDIKG 350

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
              I++  A+   LA               T      LL              IT    D
Sbjct: 351 RLAILKVHARNKKLAPEVSLEAIARRTPGFTGADLANLLNEAAILTARRRKPAITMLEID 410

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV 280
            A+ R+     G   +D +   +IA +  G  +
Sbjct: 411 DAVDRVVAGMEGTPLIDGKSKRLIAYHEVGHAI 443


>gi|221132323|ref|XP_002162256.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 940

 Score = 55.9 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 53/322 (16%), Positives = 101/322 (31%), Gaps = 66/322 (20%)

Query: 32  GQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           G  +    +  FI   K        +L F GPPG+GKT++ + +AR L   +   S   +
Sbjct: 486 GLEDIKDRILEFIAVTKISGNIQGKILCFTGPPGVGKTSIGKSIARSLNREYFRFSVGGL 545

Query: 91  AKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE--------EILY 126
               ++                        +  ++ IDE+ ++   V+        E+L 
Sbjct: 546 TDVAEIKGHRRTYVGAMPGKVIQCLKKTRTENPLILIDEVDKIGRGVQGDPTSALLELLD 605

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           P      LD  +        V ++LS+   I     V  +  PL+DR  I     + E E
Sbjct: 606 PEQNHNFLDYYL-------DVPVDLSKVLFICTANNVETIPAPLRDRMEIIEVSGYVEDE 658

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
            +       A+   +          A     +      L+++    + V + +    +I 
Sbjct: 659 KIG-----IAQQYLIPQARITTGMNAEMIDISKEALKVLVQKYCRESGVRNLQKHIEKIF 713

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
             A L+                           +  + +   +  P    E +       
Sbjct: 714 RKAALKY------------------IEKKDYIQIAPDLLKQYVGNPIFNAERMY------ 749

Query: 307 QGFIQRTPRGRLLMPIAWQHLG 328
                +TP G +   +AW  +G
Sbjct: 750 ----NKTPPG-VATGLAWTSMG 766


>gi|169834903|ref|YP_001715900.1| putative cell division protease FtsH-like protein [Clostridium
           botulinum A3 str. Loch Maree]
 gi|169409010|gb|ACA57420.1| putative Cell division protease FtsH homolog [Clostridium botulinum
           A3 str. Loch Maree]
          Length = 574

 Score = 55.9 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 53/265 (20%), Positives = 93/265 (35%), Gaps = 27/265 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAK-------ARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           + ++  G  +   ++ + +E  K         A+     +  G PG GKT LA+ +A E 
Sbjct: 146 SFKDIAGLKQVKKDMHLLVEFLKDPEKFTHKGAKLPKGAILYGEPGTGKTLLAKALAGEA 205

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S +G           A  + +L     +    ++FIDEI  +    +  L  +  
Sbjct: 206 NVPFFSINGSDFIEMFAGMGAMRVRSLFEEARENAPCIIFIDEIDAIGRKRDVDLDNSEY 265

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY-EIED 187
              L+ ++ E       +  L    +IAAT R+  L   L    RF   I ++     E+
Sbjct: 266 RQTLNALLAEMDGFNGSEGVL----VIAATNRIEDLDQALLRPGRFDKHISVSLPSTPEE 321

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
              I+   +K        +           +P     L+      +   +   I  E  D
Sbjct: 322 RLEIIGIYSKNKCFNKEVDFTNLAKQTIGFSPAQIESLINEAVLISIQYNKDNIDTECID 381

Query: 248 AA-----LLRLAIDKMGFDQLDLRY 267
            A     L   A +    D+ D+R 
Sbjct: 382 KAMYKILLKGHAKEDEKRDKDDIRL 406


>gi|325971485|ref|YP_004247676.1| anti-sigma H sporulation factor, LonB [Spirochaeta sp. Buddy]
 gi|324026723|gb|ADY13482.1| anti-sigma H sporulation factor, LonB [Spirochaeta sp. Buddy]
          Length = 823

 Score = 55.9 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 53/301 (17%), Positives = 98/301 (32%), Gaps = 43/301 (14%)

Query: 10  RNVSQEDADISLLRPRTLE-EFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGK 67
           +    E+  I   R + LE +  G  +    +  F+   K + +    ++  VGPPG+GK
Sbjct: 312 KEPKAENFSIESAR-KILERDHYGMKDVKDRILEFLAVRKKKQDTKGSIICLVGPPGVGK 370

Query: 68  TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL----------------EDRDVLFI 111
           T++   +AR L   +   S   +    ++                           V  I
Sbjct: 371 TSVGISIARSLKKQYFRFSVGGMNDESEIKGHRRTYIGAMPGKIIQGLRITKAKNPVFLI 430

Query: 112 DEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
           DEI ++ +  +        E+L P       D  +        +  ++S    I     +
Sbjct: 431 DEIDKMGVSYQGDPASALLEVLDPEQNSSFRDTYL-------DIPFDVSEVLFICTANTL 483

Query: 164 GLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAG 223
             +  PL DR  I     +   E L        K   +  + E         + TP I  
Sbjct: 484 DTIPRPLLDRMEIIQLSGYTSEEKLA-----IGKKYLVPKSMEKHGLTKDEIKYTPAILR 538

Query: 224 RLLRRVRDFAEVAH-AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGI 282
           ++       A V +  K++ +     AL  +           +    ++   F G PV +
Sbjct: 539 KIADEYAREAGVRNFEKSLHKINRKVALRLIESKPETLP---VVIDDVLLHEFLGEPVFV 595

Query: 283 E 283
           E
Sbjct: 596 E 596


>gi|317012528|gb|ADU83136.1| DNA polymerase III subunits gamma and tau [Helicobacter pylori
           Lithuania75]
          Length = 579

 Score = 55.9 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 78/256 (30%), Gaps = 59/256 (23%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA------- 75
           RP+   E  GQ      L + ++  +         LF G  G GKT+ +++ A       
Sbjct: 9   RPKHFSELVGQESVAKTLSLALDNQRLANAY----LFSGLRGSGKTSSSRIFARALMCET 64

Query: 76  -----------------RELGVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFID 112
                                ++     G       D+  L+             +  ID
Sbjct: 65  GPKAVPCDTCTQCQSALNNHHIDIIEMDGASNRGIDDVRNLIEQTRYKPSFGRYKIFIID 124

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H  +      L   +E+                    S    + ATT    L   +  
Sbjct: 125 EVHMFTTEAFNALLKTLEE------------------PPSHVKFLLATTDALKLPATILS 166

Query: 173 R---FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           R   F          I  LKTI++       ++    A  ++A   +G+ R    LL + 
Sbjct: 167 RTQHFRFKKIPENSVISHLKTILE----KEQVSYESSALEKLAHSGQGSLRDTITLLEQA 222

Query: 230 RDFAEVAHAKTITREI 245
            ++ + A  ++   E+
Sbjct: 223 INYCDNAITESKVAEM 238


>gi|304440585|ref|ZP_07400470.1| cell division protein FtsH [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304370927|gb|EFM24548.1| cell division protein FtsH [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 593

 Score = 55.9 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 58/230 (25%), Positives = 88/230 (38%), Gaps = 28/230 (12%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78
           T +   GQ EA   LK  ++   +  +  D         L VGPPG GKT LAQ VA E 
Sbjct: 150 TFDNVEGQDEAKEALKELVDFLHSPKKYTDIGAKLPKGALLVGPPGTGKTLLAQAVAGEA 209

Query: 79  GVNFRSTSGPVIA------KAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG           A  +  L    +++   ++FIDEI  +    +   +   +
Sbjct: 210 NVPFFSISGSEFVEMFVGLGAAKVRDLFKQAQEKAPCIVFIDEIDTIGKKRDGAGFSGND 269

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E     S         ++AAT R   L   L    RF   I +   ++ 
Sbjct: 270 EREQTLNQLLSEMDGFDSKLG----VVILAATNRPDSLDPALLRPGRFDRRIPVELPDLV 325

Query: 187 DLKTIVQRGAKL-TGLAVTDEAACEIAMRSRGTPRIAGRL----LRRVRD 231
             + I++  AK     A  D     +A        +A  +    LR VR 
Sbjct: 326 GREKILKLHAKKVRREASIDYKQIALATAGASGADLANMINEAALRAVRQ 375


>gi|221060877|ref|XP_002262008.1| 26S proteasome regulatory subunit 7 [Plasmodium knowlesi strain H]
 gi|193811158|emb|CAQ41886.1| 26S proteasome regulatory subunit 7, putative [Plasmodium knowlesi
           strain H]
          Length = 441

 Score = 55.9 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 82/248 (33%), Gaps = 20/248 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
           T  +  G  E    L+  +E    + E            VL  GPPG GKT  A+ +A  
Sbjct: 160 TYNDIGGCKEQLERLREVVEMPLLQPERFVTLGIDPPKGVLLYGPPGTGKTLTARAIANR 219

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
               F    G  +        A  +  L    + +   +LFIDE+  +     +    A 
Sbjct: 220 TDACFICVIGSELVQKYVGEGARMVRELFQMAKSKKACILFIDEVDAIGGSRGDE--SAH 277

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            D ++   + E  +      N     ++ AT R   L + L    R    I  +  ++E 
Sbjct: 278 GDHEVQRTMLEIVNQLDGFDNRGNIKVLMATNRPDTLDSALVRPGRIDRKIEFSLPDLEG 337

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
              I +  A    ++          +    T      +      FA  A  KTIT +   
Sbjct: 338 RTHIFKIHANTMNMSRDVRFELLARLCPNSTGSDIRSVCTEAGMFAIRARRKTITEKDLL 397

Query: 248 AALLRLAI 255
            A+ ++  
Sbjct: 398 LAINKVIH 405


>gi|323140860|ref|ZP_08075773.1| cell division protease FtsH [Phascolarctobacterium sp. YIT 12067]
 gi|322414598|gb|EFY05404.1| cell division protease FtsH [Phascolarctobacterium sp. YIT 12067]
          Length = 617

 Score = 55.9 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 49/218 (22%), Positives = 83/218 (38%), Gaps = 22/218 (10%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVARE 77
           ++  +  GQ EA   L   ++      +  D         L VGPPG GKT LA+ VA E
Sbjct: 161 KSFADVAGQDEAKEALMELVDFLHNPGKYKDIGANMPKGALLVGPPGTGKTLLARAVAGE 220

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
             V F S SG           A  +  L    +++   ++FIDEI  +    +   +   
Sbjct: 221 AKVPFFSISGSEFVEMFVGMGAARVRDLFKQAQEKAPCIVFIDEIDAIGKRRDNGQFGGN 280

Query: 130 EDFQLDLMVGEGPSARSVKINLSR-FTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           ++ +  L       +     + S+   ++AAT R   L   L    RF   I +   +++
Sbjct: 281 DEREQTL---NQLLSEMDGFDGSKGVVILAATNRPESLDKALLRPGRFDRRIPVELPDLK 337

Query: 187 DLKTIVQRGAKLTGLAV-TDEAACEIAMRSRGTPRIAG 223
             + I++  A+   +A   D      A        +A 
Sbjct: 338 GREAILKVHARNVRMADNIDYGTLARATAGASGAELAN 375


>gi|315425454|dbj|BAJ47117.1| AAA family ATPase [Candidatus Caldiarchaeum subterraneum]
          Length = 726

 Score = 55.9 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/246 (17%), Positives = 77/246 (31%), Gaps = 22/246 (8%)

Query: 28  EEFTGQVEACSNLKVFIE--------AAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           ++  G       L+  +E          +        +L  GPPG GKT LA+ VA E  
Sbjct: 458 DDIGGLENLKQELREAVEWPLKYPDVFKRLGIRPPRGILLYGPPGTGKTLLAKAVATESQ 517

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMED 131
            NF S  GP +           +  +     +    ++F DE+  ++           + 
Sbjct: 518 ANFISVKGPEVLSKWVGESEKAVREIFRKARETAPCIIFFDELDSIAPRR----GIHTDA 573

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
              D +V +  +      +L    ++ AT R  +L   L    RF   + +   +     
Sbjct: 574 GVTDRIVNQLLTEMDGMQSLKGVVVLGATNRPDILDPALLRPGRFDRVLYVPPPDKNARL 633

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            I +   +   L    +     A+    T      ++R     A   +       +    
Sbjct: 634 AIFKIHTREMPLDQDVDLEQLAALTEGYTGADIEAVVREAALIAARENINAQVVSMRHFG 693

Query: 250 LLRLAI 255
           L    I
Sbjct: 694 LALQKI 699



 Score = 54.3 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 81/221 (36%), Gaps = 24/221 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
           T E+  G  +    ++  IE      E   H        V+  GPPG GKT +A+ +A E
Sbjct: 183 TYEDIGGLHDELQRIREMIELPLKHPELFRHLGIEPPKGVILYGPPGTGKTLIAKAIANE 242

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM 129
            G +F S +GP I           L  +    E     ++FIDE+  ++    E+     
Sbjct: 243 TGAHFVSINGPEIMSKFYGESEARLREVFQEAEQNAPSIIFIDELDAIAPKRGEVTGEVE 302

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                 L+            +  +  +I AT R+  +   L+   RF   IR+   +   
Sbjct: 303 RRVVSQLLT-----LMDGLKSRGQVVVIGATNRIEAIDPALRRPGRFDREIRIGVPDRNG 357

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            K I+    +   LA  D    E+A  + G        L R
Sbjct: 358 RKEILLIHTRRMPLA-EDVNIDELAEITHGFVGADIAALTR 397


>gi|302392271|ref|YP_003828091.1| vesicle-fusing ATPase [Acetohalobium arabaticum DSM 5501]
 gi|302204348|gb|ADL13026.1| Vesicle-fusing ATPase [Acetohalobium arabaticum DSM 5501]
          Length = 493

 Score = 55.9 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 55/256 (21%), Positives = 97/256 (37%), Gaps = 27/256 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE-------ALDHVLFVGPPGLGKTTLAQVVAREL 78
           T E+  GQ  A + L   +E  +   +        L  ++  GPPG GKT +A+ VAR +
Sbjct: 66  TFEDIGGQETAKNELLEALEFVRDINKVKSLGIRPLKGIMLSGPPGTGKTLMAKAVARHI 125

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLED--------RDVLFIDEIHRL-SIIVEE 123
              F STSG           A  +  L    +D          V+FIDEI  L     + 
Sbjct: 126 DSVFISTSGSEFVEMYAGVGAKRVRELFEKAKDSAHKKNKTNAVIFIDEIEILGGKRGQN 185

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLN 181
             +   +     L+V     +   +IN+    +I AT R+ +L   +    RF   ++++
Sbjct: 186 SSHLEYDQTLNQLLVELDGMSIDDEINI---LVIGATNRIDILDKAILRPGRFDRIVKVD 242

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
             + +    I++   +   LA   +         R +      L       A  A++K I
Sbjct: 243 LPDKDGRHKILEIHTRDKPLAEDVDLEQIAKETFRFSGAHLESLANEAAIMAMRANSKEI 302

Query: 242 TREIADAALLRLAIDK 257
                  A+ ++ + +
Sbjct: 303 KSSHFKEAIDKVMMGE 318


>gi|194290075|ref|YP_002005982.1| cell division protein, ATP-dependent zinc-metallo protease; aaa
           atpase and peptidase m41 families [Cupriavidus
           taiwanensis LMG 19424]
 gi|193223910|emb|CAQ69919.1| Cell division protein, ATP-dependent zinc-metallo protease; AAA
           ATPase and peptidase M41 families [Cupriavidus
           taiwanensis LMG 19424]
          Length = 627

 Score = 55.9 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 85/220 (38%), Gaps = 16/220 (7%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLT 101
           K        VL VGPPG GKT LA+ +A E  V F S SG       V   A  +  +  
Sbjct: 181 KLGGRIPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEMFVGVGAARVRDMFE 240

Query: 102 NLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDL--MVGEGPSARSVKINLSRFTLI 157
           N + +   ++FIDEI  +       +    ++ +  L  M+ E     +     S   +I
Sbjct: 241 NAKKQAPCIVFIDEIDAVGRHRGAGMGGGNDEREQTLNQMLVEMDGFEAN----SGVIVI 296

Query: 158 AATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRS 215
           AAT R  +L   L    RF   + +   +I   + I++   +   +    +A+       
Sbjct: 297 AATNRADVLDKALLRPGRFDRQVYVGLPDIRGREQILKVHMRKVPIGNDVDASVIARGTP 356

Query: 216 RGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255
             +      L+     FA   + + +  +  + A  ++ +
Sbjct: 357 GFSGADLANLVNEAALFAARRNKRVVDMQDFEDAKDKIYM 396


>gi|326514984|dbj|BAJ99853.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 826

 Score = 55.9 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 76/198 (38%), Gaps = 29/198 (14%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARELG 79
           ++  G  +  + ++  +E      +            +L  GPPG GKT LA+ +A E G
Sbjct: 236 DDVGGVRKQLAQIRELVELPLRHPKLFKTLGVKPPKGILLYGPPGTGKTLLARAIAAESG 295

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPA--- 128
            NF   +GP I          +L  +    E +   ++F+DEI  ++   E+        
Sbjct: 296 ANFVVINGPEIMSMMAGQSEDNLRKVFAQAEAQAPSIIFMDEIDAIAPNREKTRGEVERR 355

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           +    L LM G  P A+ + I         AT R   +   L+   RF   I +   +  
Sbjct: 356 VVSQLLTLMDGLCPRAQVMVI--------GATNRPNSIDPALRRFGRFDKEIDIGVPDEV 407

Query: 187 DLKTIVQRGAKLTGLAVT 204
               I++  +K   L+  
Sbjct: 408 GRLEILRIHSKDMPLSDD 425



 Score = 45.8 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 62/288 (21%), Positives = 97/288 (33%), Gaps = 41/288 (14%)

Query: 24  PR-TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVV 74
           P+ + E+  G  +    L+  ++      E  +         VL  GPPG GKT LA+ +
Sbjct: 505 PKVSWEDVGGLEDVKLELQETVQYPVEHPEMFEFFGMEPSRGVLLYGPPGCGKTLLAKAI 564

Query: 75  ARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILY 126
           ARE   NF S  GP +          ++  L          VLF DE+  +++     + 
Sbjct: 565 ARECKANFISVKGPELLTMWFGESESNVRDLFDKARQSAPCVLFFDELDSIAVKRGNSVG 624

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR------FGIPIRL 180
            A  D  L+ ++ E               +I AT R  ++   L           IP+  
Sbjct: 625 DA-SDRVLNQLLTE----MDGINAKKTVFVIGATNRPDIIDPALLRPGRLDQLIYIPLPD 679

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR-RVRDF------- 232
               ++  K+ ++R      + + D A             I  R  +  VRD        
Sbjct: 680 EASRLQIFKSCLRRSPLSRRVNLPDLARSTAGFSGADITEICQRACKLAVRDLVQRSSLV 739

Query: 233 --AEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
             A       ITR+    A+          D L   Y    AR F  G
Sbjct: 740 GKAVAMAGAEITRKNFLGAMEHARRSVSDLDVLKYEY---FARKFKQG 784


>gi|198276295|ref|ZP_03208826.1| hypothetical protein BACPLE_02489 [Bacteroides plebeius DSM 17135]
 gi|198270737|gb|EDY95007.1| hypothetical protein BACPLE_02489 [Bacteroides plebeius DSM 17135]
          Length = 676

 Score = 55.9 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 72/321 (22%), Positives = 116/321 (36%), Gaps = 44/321 (13%)

Query: 26  TLEEFTGQ-------VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ        E    LK   +  +   +     L VGPPG GKT LA+ VA E 
Sbjct: 185 TFKDVAGQAAAKQEVQEIVDFLKQPQKYTELGGKIPKGALLVGPPGTGKTLLAKAVAGEA 244

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM- 129
            V F S SG       V   A  +  L    +++   ++FIDEI  +     +   P+M 
Sbjct: 245 DVPFFSISGSDFVEMFVGVGASRVRDLFRQAKEKSPCIIFIDEIDAVGRARGKN--PSMG 302

Query: 130 ----EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183
                +  L+ ++ E     S     S   ++AAT RV +L   L    RF   I ++  
Sbjct: 303 GNDERENTLNQLLTEMDGFGSN----SGVIILAATNRVDILDKALLRAGRFDRQIYVDLP 358

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           ++ + K +     K   L    +           +      +       A     K++ +
Sbjct: 359 DLNERKEVFGVHLKPLKLDSNVDVDLLARQTPGFSGADIANVCNEAALIAARHQKKSVDK 418

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           +   AA+ R+     G ++          R       G  TIS  L        +   P 
Sbjct: 419 DDFLAAIDRIVG---GLEKKTKVMTAAEKRAIALHEAGHATISWFL--------EHANP- 466

Query: 304 MIQQGFIQRTPRGRLLMPIAW 324
           +I+   +   PRGR  +  AW
Sbjct: 467 LIKVTIV---PRGR-ALGAAW 483


>gi|315230875|ref|YP_004071311.1| cell division protein FtsH [Thermococcus barophilus MP]
 gi|315183903|gb|ADT84088.1| cell division protein FtsH [Thermococcus barophilus MP]
          Length = 834

 Score = 55.9 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 65/306 (21%), Positives = 109/306 (35%), Gaps = 34/306 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
           T E+  G  +A   ++  +E      E            VL  GPPG GKT LA+ VA E
Sbjct: 208 TYEDIGGLKDAIQKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANE 267

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM 129
              +F + +GP I           L  +    E+    ++FIDEI  ++   EE+     
Sbjct: 268 TNAHFIAINGPEIMSKFYGESEERLREVFKEAEENAPSIIFIDEIDAIAPKREEVTGEVE 327

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
           +     L+               +  +IAAT R   +   L+   RF   I +   + + 
Sbjct: 328 KRVVSQLLT-----LMDGLKKRGKVIVIAATNRPDAIDPALRRPGRFDREIEVGVPDKQG 382

Query: 188 LKTIVQRGAKL--TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
            K I+Q   +           +  ++        R   + L  +    E A  +   +EI
Sbjct: 383 RKEILQIHTRGMPLEPDYDKPSVLKVLKEFLKEERFDKKKLEEIIKKVEKAKDEDEIKEI 442

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
             +        K     +D + L  +A    G  VG +   A L+        ++   +I
Sbjct: 443 LKSDGEIYREVKAKL--ID-KMLDELAEKTHG-FVGAD--LAALAREAAM---VVLRRLI 493

Query: 306 QQGFIQ 311
           Q+G I 
Sbjct: 494 QEGKIN 499



 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/184 (21%), Positives = 67/184 (36%), Gaps = 23/184 (12%)

Query: 28  EEFTGQVEACSNLKVFIE--------AAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           E+  G  +    L+  +E          +        +L  GPPG GKT LA+ VA E  
Sbjct: 545 EDIGGLEDVKQALREAVEWPLKYPKAFQRLGINPPKGILLYGPPGTGKTMLAKAVATESE 604

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAMED 131
            NF    GP +           +  +          V+FIDEI  ++      +  +  +
Sbjct: 605 ANFIGIRGPEVLSKWVGESEKRIREIFRKARQAAPTVVFIDEIDAIAP-----MRGSDVN 659

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
              D ++ +  +        S   +IAAT R  +L   L    RF   I +   + +   
Sbjct: 660 RVTDRIINQLLTEMDGLEENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARY 719

Query: 190 TIVQ 193
            I++
Sbjct: 720 EILK 723


>gi|148508161|gb|ABQ75952.1| AAA-type ATPase [uncultured haloarchaeon]
          Length = 752

 Score = 55.9 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 57/296 (19%), Positives = 99/296 (33%), Gaps = 36/296 (12%)

Query: 11  NVSQEDADISLLR------PR-TLEEFTGQVEACSNLKVFIE---AAKARAE-----ALD 55
           N +  D + S +R      P+ + ++  G       +K  +E    ++ R E     A  
Sbjct: 448 NDALSDVEPSAMREVLVELPKVSWDDVGGLEGPTQKVKESVEWPITSRGRFERMGIDAPK 507

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDR------D 107
            VL  GPPG GKT +A+ VA E   NF S  GP  +    G+    +     +       
Sbjct: 508 GVLLYGPPGTGKTLIAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFRKARQVSPT 567

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           V+F DE+  L+          + +  ++ ++ E               ++AAT R  ++ 
Sbjct: 568 VIFFDELDSLAPSRGGGTGNNVSERVVNQLLTELDGLEEN----GNVMVVAATNRPDMID 623

Query: 168 NPLQ-----DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
             L      DR  +  +      E +  I  R + L      D +  EIA  + G     
Sbjct: 624 PALIRSGRFDRLVLIGQPGEEGREQILKIHTRNSPL----APDVSLREIAEITDGYVGSD 679

Query: 223 GRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
              + R      +                 +   +       + Y   +   F GG
Sbjct: 680 LESIAREAAIEALREDGDAQEIEMRHFRKAMESVRATITDDLMNYYEDMQEEFKGG 735



 Score = 52.4 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 49/199 (24%), Positives = 73/199 (36%), Gaps = 23/199 (11%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLT 101
           K   E    VL  GPPG GKT LA+ VA E   +F S +GP I           L  +  
Sbjct: 227 KLGIEPPQGVLLHGPPGTGKTLLAKAVANETSASFFSIAGPEIISKYYGESEQQLREIFE 286

Query: 102 NLEDR--DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA 159
           +  +    ++FIDE+  ++   E++           L+               +  +I A
Sbjct: 287 DATEESPSIIFIDELDSIAPKREDVTGEVERRVVAQLLTM-----MDGLETRGQVIVIGA 341

Query: 160 TTRVGLLTNPLQ-----DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEI--- 211
           T RV  +   L+     DR       +    +++  I  RG  L+     D  A E    
Sbjct: 342 TNRVDSVDPALRRPGRFDREIEIGVPDEVGRKEILQIHTRGMPLSDDVSLDYLADETHGF 401

Query: 212 --AMRSRGTPRIAGRLLRR 228
             A     T   A + LRR
Sbjct: 402 VGADIESLTKEAAMKALRR 420


>gi|146339824|ref|YP_001204872.1| cell division protein FtsH-like protein [Bradyrhizobium sp. ORS278]
 gi|146192630|emb|CAL76635.1| Cell division protein ftsH homolog (ATP-dependent zinc-metallo
           protease) [Bradyrhizobium sp. ORS278]
          Length = 615

 Score = 55.9 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 59/261 (22%), Positives = 89/261 (34%), Gaps = 25/261 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKAR-------AEALDHVLFVGPPGLGKTTLAQVVAREL 78
             ++  G  EA   L+  +   K R             VL VGPPG GKT LA+ VA E 
Sbjct: 157 RFDDVAGVDEAKDELREIVSFLKDRKSYGRLGGRMPKGVLLVGPPGTGKTLLAKAVAGEA 216

Query: 79  GVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           GV F S SG            A+  DL       +   ++FIDE+  L       + P  
Sbjct: 217 GVPFFSISGSEFVEMFVGVGAARVRDLFEQ-ARAKAPAIIFIDELDALGRAR--GMGPFA 273

Query: 130 EDFQLDLMVGEGPSARSVKINLSR-FTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
                               + S    L+AAT R  +L   L    RF   + ++  +  
Sbjct: 274 GGHDEKEQTLNQLLVELDGFDSSTGLVLLAATNRPEILDPALLRAGRFDRQVLVDRPDKP 333

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
               I+    K   LA   +     A+    T      L+      A    A  +T +  
Sbjct: 334 GRIQILNVHLKKAKLAADVDPEKVAALTPGFTGADLANLVNEATLLATRRGANEVTLDDF 393

Query: 247 DAALLRLAIDKMGFDQLDLRY 267
           + A+ R+     G ++ +   
Sbjct: 394 NNAIERIVA---GLEKRNRLL 411


>gi|60735077|dbj|BAD91024.1| valosin containing protein-1 [Eisenia fetida]
 gi|147225256|dbj|BAF62455.1| valosine containing peptide-1 [Eisenia fetida]
          Length = 808

 Score = 55.9 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 51/236 (21%), Positives = 86/236 (36%), Gaps = 36/236 (15%)

Query: 2   MDREGLLSRNVSQED-------ADISLLR------PR-TLEEFTGQVEACSNLKVFIEAA 47
           +D E L S  VSQE+       ++ S LR      P  T E+  G       L+  ++  
Sbjct: 435 IDAEVLSSLAVSQENFRWALSKSNPSALRETAVEVPTVTWEDVGGLENVKRELQELVQYP 494

Query: 48  KARAEAL--------DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--------- 90
               +            VLF GPPG GKT LA+ +A E   NF S  GP +         
Sbjct: 495 VEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESE 554

Query: 91  AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN 150
           A   D+     +     VLF DE+  ++                D ++ +  +      +
Sbjct: 555 ANVRDIFDKARSAAP-CVLFFDELDSIAKSRGGN--VGDGGGAADRVINQLLTEMDGMSS 611

Query: 151 LSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVT 204
                +I AT R  ++ + +    R    I +   + +    I++   + + +A  
Sbjct: 612 KKNVFIIGATNRPDIIDSAILRPGRLDQLIYIPLPDDKSRIQILKANLRKSPVAKD 667



 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 49/258 (18%), Positives = 90/258 (34%), Gaps = 25/258 (9%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARA--------EALDHVLFVGPPGLGKTTLAQVVARELG 79
           ++  G  +  + +K  +E              +    +L  GPPG GKT +A+ VA E G
Sbjct: 202 DDIGGCRKQLAQIKEMVELPLRHPQLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG 261

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAMED 131
             F   +GP I          +L       E     ++FIDE+  ++   E+        
Sbjct: 262 AFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK-----THG 316

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
                +V +  +        +   ++AAT R   +   L+   RF   + +   +     
Sbjct: 317 EVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDTSGRL 376

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            I++   K   LA  D    +IA  + G        L       +    K    ++ D A
Sbjct: 377 EILRIHTKNMKLA-NDVDLEQIASETHGHVGSDLAAL-CSEAALQQIREKMDVIDLEDEA 434

Query: 250 LLRLAIDKMGFDQLDLRY 267
           +    +  +   Q + R+
Sbjct: 435 IDAEVLSSLAVSQENFRW 452


>gi|328852964|gb|EGG02106.1| ATP-dependent peptidase [Melampsora larici-populina 98AG31]
          Length = 814

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 58/253 (22%), Positives = 90/253 (35%), Gaps = 30/253 (11%)

Query: 24  PRTLEEFTGQVEACSNLKVF-------IEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           P T E+  G   A   LK         +  A+        VL  GPPG GKT LA+ VA 
Sbjct: 375 PVTFEDVHGCDSAKEELKEVVDFLKDPLRFARLGGRLPRGVLLTGPPGTGKTLLARAVAG 434

Query: 77  ELGVNFRSTSGPVIA------KAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           E GV F   SG           A  +  L          ++FIDE+  L           
Sbjct: 435 EAGVQFFIASGSEFDEMYVGVGARRIRELFAAARKAAPAIIFIDELDALGAKR-SSKDQH 493

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
                L+ ++ E    +  +       L+AAT     L   L    RF   + +   +  
Sbjct: 494 YIKQTLNQLLVELDGFQQTEG----VILMAATNFPQSLDKALTRPGRFDRHVAVPLPDAR 549

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA----HAKTIT 242
               I++  A+   +        +++  +R TP  +G  L+ + + A V      A  +T
Sbjct: 550 GRVQILKHHARNVTVNSD----LDLSFVARSTPGFSGADLQNLVNQAAVKASREGADNVT 605

Query: 243 REIADAALLRLAI 255
               D A  R+ +
Sbjct: 606 ASHFDWARDRIMM 618


>gi|210134919|ref|YP_002301358.1| DNA polymerase III subunits gamma and tau [Helicobacter pylori P12]
 gi|210132887|gb|ACJ07878.1| DNA polymerase III gamma and tau subunits [Helicobacter pylori P12]
          Length = 576

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 78/256 (30%), Gaps = 59/256 (23%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA------- 75
           RP+   E  GQ      L + ++  +         LF G  G GKT+ +++ A       
Sbjct: 9   RPKHFSELVGQESVAKTLSLALDNQRLANAY----LFSGLRGSGKTSSSRIFARALMCEE 64

Query: 76  -----------------RELGVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFID 112
                                ++     G       D+  L+             +  ID
Sbjct: 65  GPKSVPCDTCIQCQSALNNHHIDIIEMDGASNRGIDDVRNLIEQTRYKPSFGRYKIFIID 124

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H  +      L   +E+                    S    + ATT    L   +  
Sbjct: 125 EVHMFTTEAFNALLKTLEE------------------PPSHVKFLLATTDALKLPATILS 166

Query: 173 R---FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           R   F          I  LKTI++       ++    A  ++A   +G+ R    LL + 
Sbjct: 167 RTQHFRFKKIPENSVISHLKTILE----KEQVSYETSALEKLAHSGQGSLRDTITLLEQA 222

Query: 230 RDFAEVAHAKTITREI 245
            ++ + A  ++   E+
Sbjct: 223 INYCDNAITESKVAEM 238


>gi|329765429|ref|ZP_08257008.1| ATPase central domain-containing protein [Candidatus
           Nitrosoarchaeum limnia SFB1]
 gi|329138070|gb|EGG42327.1| ATPase central domain-containing protein [Candidatus
           Nitrosoarchaeum limnia SFB1]
          Length = 397

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/212 (20%), Positives = 80/212 (37%), Gaps = 24/212 (11%)

Query: 3   DREGLLSRNVSQEDADISLLR--PR-TLEEFTGQVEACSNLKVFIEAAKARAEALD---- 55
           +++  + R   + D +  +++  P  T +E  G  +A + L+  I     R +       
Sbjct: 90  EQKESVQRQTDENDFEELVMKEKPNVTWDEVIGLDDAKNALRESIVYPTKRPDLFPLGWP 149

Query: 56  -HVLFVGPPGLGKTTLAQVVARELGVNFRST---------SGPVIAKAGDLAALLTNLED 105
             +L  GPPG GKT LA   A E+   F +           G        L A+     +
Sbjct: 150 KGMLLYGPPGTGKTMLAAATANEMDGYFINVDASSMMSKWLGEAEKNVSKLFAMARKYAE 209

Query: 106 RD----VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATT 161
           ++    +LF+DE+  L       +   +      L   +G + +   + L    +I AT 
Sbjct: 210 KEGKPVILFVDEVDSLLGSRNSEVGGEVRTKNQFLTEMDGVNGKGKDLML---YVIGATN 266

Query: 162 RVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           +   L  P   RF   I ++    E  + + +
Sbjct: 267 KPWSLDWPFLRRFQKRIYVSLPTQEAREKLFE 298


>gi|326783112|ref|YP_004323509.1| clamp loader subunit [Prochlorococcus phage P-HM2]
 gi|310005530|gb|ADO99918.1| clamp loader subunit [Prochlorococcus phage P-HM2]
          Length = 313

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 52/262 (19%), Positives = 89/262 (33%), Gaps = 43/262 (16%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
            E   +   RP+ +E      +     K F++A +     + ++L  G  G+GKTT+A+ 
Sbjct: 2   NEFLWVEKYRPKNIEHCILPDDLKKTFKSFVDAGE-----VPNLLLCGTAGIGKTTVAKA 56

Query: 74  VARELGVNFRSTSGP--------VIAKAGDLAAL--LTNLEDRDVLFIDEIHRLSIIVEE 123
           +  ELGV+    +G         V   A   A+   LT+     V+ IDE    +  V+ 
Sbjct: 57  LCHELGVDSIVINGSDEGRFLDTVRNNAKQFASTVSLTSSAKHKVIIIDEADNTTHDVQL 116

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR--LN 181
           +L  ++E+FQ                  S    I        +  PL  R  +       
Sbjct: 117 LLRASIEEFQ------------------SNCRFIFTCNFKNKIIQPLHSRTTVIDCNTRG 158

Query: 182 FYEIEDLKTIVQRGAKLT---GLAVTDEAACEIAMRSRGTPRIAGRLLRR-----VRDFA 233
             + +      +R   +     +  TD    E+  +     R     L+R     V D  
Sbjct: 159 KQKQQIATQFFERCRGILTAENIQFTDAVVAEVVQKFFPDFRRTLNELQRYAASGVIDTG 218

Query: 234 EVAHAKTITREIADAALLRLAI 255
            +A    +  E    AL     
Sbjct: 219 ILAQISQVRLEKLVGALKAKDF 240


>gi|300024235|ref|YP_003756846.1| DNA polymerase III subunits gamma and tau [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299526056|gb|ADJ24525.1| DNA polymerase III, subunits gamma and tau [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 617

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 58/317 (18%), Positives = 102/317 (32%), Gaps = 41/317 (12%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           S             RP T ++  GQ    + L+    + +         +  G  G+GKT
Sbjct: 18  SEAPKPYVVLARKYRPATFDDLIGQSAMVTTLRNAFASGRIAQGY----MLTGVRGVGKT 73

Query: 69  TLAQVVARELGVNFRSTSGPVIAKA-GDLAAL------LTNLEDRDVLFID-----EIHR 116
           T A+++AR L      +    I K   D+  L      +      DVL ID      +  
Sbjct: 74  TTARILARALNYEAPDSGNGAIDKPTIDMPGLGVHCKDIMEGRHPDVLEIDAASNTGVDN 133

Query: 117 LSIIVEEILYPAMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLT 167
           +  I+E   Y  +       ++ E             ++++   +    I ATT +  + 
Sbjct: 134 IREIIESAQYTPLVARTKVFIIDEVHMLSKGAFNALLKTLEEPPAHVRFIFATTEIRKVP 193

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
             +  R      L   E   L    ++ ++  G     +A   IA  + G+ R    +L 
Sbjct: 194 VTVLSRCQ-RFDLRRVEQPVLAAHFKKISESEGAEADADALQLIARAAEGSVRDGLSIL- 251

Query: 228 RVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISA 287
              D A       +T             D +G       +    A   G  P  +   ++
Sbjct: 252 ---DQAIAMGEGHVTAASV--------RDMLGLADRGRIFDLAEAIFRGDLPAALNGFAS 300

Query: 288 GL---SEPRDAIEDLIE 301
                +E  + I DL E
Sbjct: 301 LHRDGAEASEVIGDLAE 317


>gi|210615344|ref|ZP_03290508.1| hypothetical protein CLONEX_02724 [Clostridium nexile DSM 1787]
 gi|210150371|gb|EEA81380.1| hypothetical protein CLONEX_02724 [Clostridium nexile DSM 1787]
          Length = 688

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 55/257 (21%), Positives = 99/257 (38%), Gaps = 24/257 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEA-------LDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ EA  +L+  ++      +            L VGPPG GKT LA+ VA E 
Sbjct: 198 TFKDVAGQDEAKESLQEVVDFLHNPGKYTGIGAKLPKGALLVGPPGTGKTLLAKAVAGEA 257

Query: 79  GVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
            V F S SG            ++  DL     ++    ++FIDEI  +    +  +    
Sbjct: 258 KVPFFSLSGSAFVEMYVGVGASRVRDLFKQAQSMAP-CIIFIDEIDAIGKSRDNSMGSND 316

Query: 130 E-DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           E +  L+ ++ E     + K  L    L+AAT R  +L   L    RF   I ++  +++
Sbjct: 317 EREQTLNQLLAEMDGFDTDKGLL----LLAATNRPEILDPALLRPGRFDRRIIVDKPDLK 372

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
               +++  AK   +  T +        S         ++      A       +++   
Sbjct: 373 GRIDVLKVHAKDVKMDETVDLEAIALATSGAVGSDLANMINEAAINAVKNGRNVVSQADL 432

Query: 247 DAALLRLAIDKMGFDQL 263
             A+  + + K   D++
Sbjct: 433 FEAVEVVLVGKEKKDRI 449


>gi|170076977|ref|YP_001733615.1| ATP-dependent metalloprotease FtsH [Synechococcus sp. PCC 7002]
 gi|169884646|gb|ACA98359.1| ATP-dependent metalloprotease, FtsH family [Synechococcus sp. PCC
           7002]
          Length = 628

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 61/273 (22%), Positives = 100/273 (36%), Gaps = 23/273 (8%)

Query: 27  LEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVARELG 79
            ++  G  EA   L+  +   K         A     VL VGPPG GKT LA+ +A E G
Sbjct: 172 FDDVAGIEEAKEELQEVVTFLKQPEKFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAG 231

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMED 131
           V F S SG           A  +  L    ++    ++FIDEI  +       +    ++
Sbjct: 232 VPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCLIFIDEIDAVGRQRGAGIGGGNDE 291

Query: 132 FQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            +  L  ++ E               +IAAT R  +L + L    RF   + ++  +I+ 
Sbjct: 292 REQTLNQLLTEMDGFEGNTG----IIIIAATNRPDVLDSALMRPGRFDRQVTVDTPDIKG 347

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
             +I++  A+   LA               +      LL            + IT    D
Sbjct: 348 RLSILEVHARNKKLADEISLDVIARRTPGFSGADLANLLNEAAILTARRRKEAITMAEID 407

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV 280
            A+ R+     G   +D +   +IA +  G  +
Sbjct: 408 DAVDRVIAGMEGTPLVDSKSKRLIAYHEVGHAI 440


>gi|156102703|ref|XP_001617044.1| 26S proteasome ATPase subunit [Plasmodium vivax SaI-1]
 gi|148805918|gb|EDL47317.1| 26S proteasome ATPase subunit, putative [Plasmodium vivax]
          Length = 420

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 82/248 (33%), Gaps = 20/248 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
           T  +  G  E    L+  +E    + E            VL  GPPG GKT  A+ +A  
Sbjct: 160 TYNDIGGCKEQLEKLREVVEMPLLQPERFVTLGIDPPKGVLLYGPPGTGKTLTARAIANR 219

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
               F    G  +        A  +  L    + +   +LFIDE+  +     +    A 
Sbjct: 220 TDACFICVIGSELVQKYVGEGARMVRELFQMAKSKKACILFIDEVDAIGGSRGDE--SAH 277

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            D ++   + E  +      N     ++ AT R   L + L    R    I  +  ++E 
Sbjct: 278 GDHEVQRTMLEIVNQLDGFDNRGNIKVLMATNRPDTLDSALVRPGRIDRKIEFSLPDLEG 337

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
              I +  A    ++          +    T      +      FA  A  KTIT +   
Sbjct: 338 RTHIFKIHANTMNMSRNVRFELLARLCPNSTGSDIRSVCTEAGMFAIRARRKTITEKDLL 397

Query: 248 AALLRLAI 255
            A+ ++  
Sbjct: 398 LAINKVIH 405


>gi|30526336|gb|AAP32310.1| putative FtsH protease [Solanum lycopersicum]
          Length = 714

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 60/256 (23%), Positives = 97/256 (37%), Gaps = 36/256 (14%)

Query: 25  RTLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
               +  G  EA S L+  +          +   +    VL VGPPG GKT LA+ +A E
Sbjct: 222 TRFSDVKGVDEAKSELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGE 281

Query: 78  LGVNFRSTSGPVIA------KAGDLAALLTNLEDRD--VLFIDEIHRL----SIIVEEIL 125
            GV F S SG           A  +  L    + R   ++FIDEI  +    +   ++ +
Sbjct: 282 AGVPFFSCSGSEFEEMFVGVGARRVRDLFAAAKKRSPCIIFIDEIDAIGGSRNPKDQQYM 341

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183
              +    ++L        +          +IAAT     L   L    RF   I +   
Sbjct: 342 RMTLNQLLVEL-----DGFKQNDG----IIVIAATNFAESLDKALVRPGRFDRNIVVPNP 392

Query: 184 EIEDLKTIVQRG-AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           ++E  K I++   +K+      D     + + +RGTP  +G  L  + + A V  A    
Sbjct: 393 DVEGRKQILESHMSKILKADDVD-----LMIIARGTPGFSGADLANLVNIAAVKAAMDGA 447

Query: 243 REIADAALLRLAIDKM 258
           + ++ A L       M
Sbjct: 448 KAVSLADLEHAKDKIM 463


>gi|108885112|ref|NP_073090.2| DNA polymerase III subunits gamma and tau [Mycoplasma genitalium
           G37]
 gi|255660073|ref|ZP_05405482.1| DNA polymerase III subunits gamma and tau [Mycoplasma genitalium
           G37]
 gi|94730374|sp|P47658|DPO3X_MYCGE RecName: Full=DNA polymerase III subunit gamma/tau
 gi|84626167|gb|AAC71650.2| DNA polymerase III, subunit gamma and tau [Mycoplasma genitalium
           G37]
 gi|166079036|gb|ABY79654.1| DNA polymerase III, subunit gamma and tau [synthetic Mycoplasma
           genitalium JCVI-1.0]
          Length = 597

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 82/256 (32%), Gaps = 41/256 (16%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV-- 80
           RP   ++  GQ       K+ + A   R +  +  +F G  G GKTT A+++A+ +    
Sbjct: 10  RPINFKQTLGQESIR---KILVNAI-NRDKLPNGYIFSGERGTGKTTFAKIIAKAINCLN 65

Query: 81  ----------------------NFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLS 118
                                 +             D+  L+ N+ +    F  +++ L 
Sbjct: 66  WDQIDVCNSCDVCKSINTNSAIDIVEIDAASKNGINDIRELVENVFNHPFTFKKKVYIL- 124

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
              E  +        L   + E P              I  TT    +   +  R     
Sbjct: 125 --DEAHMLTTQSWGGLLKTLEESP---------PYVLFIFTTTEFNKIPLTILSRCQSFF 173

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
                  + +   +   AK   + +  +A  +IA  S+G+ R    LL ++ +F++    
Sbjct: 174 FKKI-TSDLILERLNDIAKKEKIKIEKDALIKIADLSQGSLRDGLSLLDQISNFSDSEKI 232

Query: 239 KTITREIADAALLRLA 254
                E     + R A
Sbjct: 233 SITDVEKTFNIVDRNA 248


>gi|322827699|gb|EFZ31763.1| peroxisome assembly protein, putative [Trypanosoma cruzi]
          Length = 954

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 47/113 (41%), Gaps = 15/113 (13%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAKARAEALDH-------VLFVGPPGLGKTTLAQVVAR 76
           P   ++  G  EA   L+  I+      E           +LF GPPG GKT LA+ VA 
Sbjct: 657 PVRWKDVGGLEEAKRELRETIQLPLLHPELFSTGTKRRAGILFYGPPGCGKTLLAKAVAT 716

Query: 77  ELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIV 121
           E+ +NF +  GP +          ++  L     D    ++F DE+  L+   
Sbjct: 717 EMNMNFMAVKGPELINQYVGESEKNIRLLFQRARDNSPCIIFFDELDALAPAR 769


>gi|313680818|ref|YP_004058557.1| membrane protease ftsh catalytic subunit [Oceanithermus profundus
           DSM 14977]
 gi|313153533|gb|ADR37384.1| membrane protease FtsH catalytic subunit [Oceanithermus profundus
           DSM 14977]
          Length = 618

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 68/280 (24%), Positives = 103/280 (36%), Gaps = 32/280 (11%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAK-------ARAEALDHVLFVGPPGLGKTTLAQVVARE 77
            T ++  G  EA   L   ++  K         AE    VL VGPPG GKT LA+ VA E
Sbjct: 164 TTFKDVAGHEEAKRELVEVVDFLKHPQKYLAIGAEIPKGVLLVGPPGTGKTLLARAVAGE 223

Query: 78  LGVNFRSTSGPVIA------KAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM 129
            GV F S S            A  +  L          ++FIDEI  +       +    
Sbjct: 224 AGVPFFSVSASEFMEMFVGVGASRVRTLFEEARKNAPAIIFIDEIDSIGRKRGAGIGGGH 283

Query: 130 EDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           ++ +  L  ++ E               ++AAT R  +L   L    RF   + +    +
Sbjct: 284 DEREQTLNQILAEMDGFEKDTS----VIVMAATNRPDILDPALLRPGRFDRKVMVGLPSL 339

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR-VRDFAEVAHAKTITRE 244
           E+ K I+    +   +A  D    E+A     TP  +G  L+  V + A  A  +   R 
Sbjct: 340 EERKAILLVHMRGKPIA-DDVDVEELAQM---TPGFSGADLKNLVNEAALQAARENGERI 395

Query: 245 IADAALLRLAIDKMGFDQLDLRY----LTMIARNFGGGPV 280
                L  L    +G ++  L+        IA +  G  V
Sbjct: 396 HKQHFLTALDKIVLGLERGSLKLSDKEKRAIAYHEAGHAV 435


>gi|303244216|ref|ZP_07330553.1| 26S proteasome subunit P45 family [Methanothermococcus okinawensis
           IH1]
 gi|302485343|gb|EFL48270.1| 26S proteasome subunit P45 family [Methanothermococcus okinawensis
           IH1]
          Length = 408

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 55/268 (20%), Positives = 95/268 (35%), Gaps = 23/268 (8%)

Query: 23  RPR-TLEEFTGQVEACSNLKVFIEAA--------KARAEALDHVLFVGPPGLGKTTLAQV 73
           RP  +  +  G  E    +K  +E          K   E    VL  GPPG GKT LA+ 
Sbjct: 143 RPNISFSDIGGLEEQIKEVKEVVELPLTHPELFEKVGIEPPKGVLLYGPPGTGKTLLAKA 202

Query: 74  VARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEIL 125
           VA E   +F    G  +        A  +  +    +++   ++FIDEI  ++    E L
Sbjct: 203 VAHETNASFIKIVGSELVKKFIGEGAKLVKDVFKLAKEKAPCIIFIDEIDAVASRRTESL 262

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183
                D ++   + +  +      +     +IAAT R  +L   +    RF   I +   
Sbjct: 263 --TGGDREVQRTLMQLLAEMDGFESKGDVKIIAATNRPDILDPAILRPGRFDRIIEVPAP 320

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
             E    I++   K   L   D               +   +      FA     + +T 
Sbjct: 321 SEEGRLEILKIHTKNMNLKHVDLKKIAKMTEGCVGADL-KAICTEAGMFAIRDGREYVTM 379

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMI 271
           +   AA+ ++   K   ++ D   L ++
Sbjct: 380 DDFLAAIEKVWAKKR-DNKTDRPTLHVM 406


>gi|269991327|emb|CAX12511.1| cell division protein FtsH-like protein [Fucus vesiculosus]
          Length = 628

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 70/314 (22%), Positives = 110/314 (35%), Gaps = 45/314 (14%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +  +  G  EA    + F+   K         A     V+ VGPPG GKT LA+ +A E 
Sbjct: 172 SFNDVAGIDEAKQEFEEFVSFLKMPQLFTAVGANPPKGVIIVGPPGTGKTLLAKAIAGEA 231

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG           A  +  L    E     +LFIDEI  +       +    +
Sbjct: 232 GVPFISISGSEFVEMFVGIGASRVRDLFETAERNSPCILFIDEIDAIGRQRGTGVGGTND 291

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ-----DRFGIPIRLNFY 183
           + +  L  ++ E    +      S   +IAAT R  +L + L      DR       + Y
Sbjct: 292 EREQTLNQILTEMDGFK----PTSGIIVIAATNRADVLDSALLRPGRFDRQITVYLPDIY 347

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
              ++  +  R  K+         A   A  S         +L         A+ +TIT 
Sbjct: 348 GRIEILKVHSRDKKIDSKTSLKFIAQRTAGFSGAD---LANILNEAAILTARANLETITI 404

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303
           +    A+ R+     G    D R   ++A +  G       ++  L +  D ++ +    
Sbjct: 405 KQIYTAIERIIAGLEGVLLNDSRNKRLVAYHEVGH-----ALAGTLLKNHDDVQKVTL-- 457

Query: 304 MIQQGFIQRTPRGR 317
                     PRGR
Sbjct: 458 ---------IPRGR 462


>gi|226288483|gb|EEH43995.1| AAA family ATPase [Paracoccidioides brasiliensis Pb18]
          Length = 754

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/308 (14%), Positives = 94/308 (30%), Gaps = 40/308 (12%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFT------------GQVEACSNLKVFIEAAK 48
           M+  E LL          +   RP  + E              GQ +    L+  +E   
Sbjct: 447 MIPDENLLQIEDIDISLALQETRPTAMREVFLETPKVRWSDIGGQHKIKRRLQKAVERPL 506

Query: 49  ARAEALD--------HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAA 98
              + +          +L  GPPG  KT   + +A E G+NF +  G  I     G+   
Sbjct: 507 KFPDRMKRLNISGKKGILLYGPPGCSKTLTVKALATEAGLNFLAVKGAEILSMYVGESER 566

Query: 99  LLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152
            L  +  +       ++F DEI  ++               ++++     +       L 
Sbjct: 567 ALREIFRKARSASPSIIFFDEIDAIAARRNNG----PSQGGINVLTTL-LNEMDGIEELK 621

Query: 153 RFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACE 210
              ++AAT +  +L   L    R    + +   +++  K I++     + +    +    
Sbjct: 622 NVLVVAATNKPEVLDPALMRPGRLDNILYVGPPDLQARKEILKIWFSKSEVDDEVDIDRL 681

Query: 211 IAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTM 270
             +    +      +     D A     +T   +            +   +Q+  +    
Sbjct: 682 AQVTDGYSGAEMVSICETAADGALDEEEETGQEQKIAW-----RHFEHALNQVHKQISEA 736

Query: 271 IARNFGGG 278
           +   +   
Sbjct: 737 VIEGYERW 744


>gi|295102377|emb|CBK99922.1| ATP-dependent metalloprotease FtsH [Faecalibacterium prausnitzii
           L2-6]
          Length = 611

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/192 (23%), Positives = 76/192 (39%), Gaps = 23/192 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAA-------KARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G+ EA  NL+  ++         +  A     +L VGPPG GKT LA+ VA E 
Sbjct: 164 RFADVAGEDEAKENLQEIVDYLHDPKKYEEIGASMPKGILLVGPPGTGKTMLAKAVAGES 223

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG           A  +  L    +++   ++FIDEI  +            +
Sbjct: 224 NVPFFSISGSEFVEMFVGMGASKVRDLFKQAKEKAPCIVFIDEIDAIGQKRNSSQLGGND 283

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E           S   ++AAT R   L   L    RF   + +   +++
Sbjct: 284 EREQTLNQLLTEMDGFEGN----SGVIILAATNRPDSLDPALTRPGRFDRRVPVELPDLK 339

Query: 187 DLKTIVQRGAKL 198
             + I++  A+ 
Sbjct: 340 GREEILKVHARK 351


>gi|255526973|ref|ZP_05393866.1| Microtubule-severing ATPase [Clostridium carboxidivorans P7]
 gi|296185137|ref|ZP_06853547.1| AAA family ATPase, CDC48 family protein [Clostridium
           carboxidivorans P7]
 gi|255509332|gb|EET85679.1| Microtubule-severing ATPase [Clostridium carboxidivorans P7]
 gi|296049971|gb|EFG89395.1| AAA family ATPase, CDC48 family protein [Clostridium
           carboxidivorans P7]
          Length = 704

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 81/220 (36%), Gaps = 32/220 (14%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLED 105
           EA   +L  GPPG GKT +A+ +A E   +F   +GP I           +  +     +
Sbjct: 212 EAPKGILLYGPPGTGKTLIAKAIASETEAHFIHVNGPEIMNKYYGESEAKIRQIFKEARN 271

Query: 106 R--DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
           +   ++F+DE+  ++   E      +       +V +  +      +  +  +I AT   
Sbjct: 272 KAPSIIFLDELDSIAPRREN-----VHGDVEKRVVAQLLALMDGLESRGQVVVIGATNIP 326

Query: 164 GLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRI 221
             L   L+   RF   I +   + +    I+Q   K   L   D    E+A  + G    
Sbjct: 327 DSLDTALRRAGRFDKEIAIMPPDKDGRFNILQIHTKGMPLD-DDVELEELAKITHGFVGS 385

Query: 222 AGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
               L                +E    AL R ++DK+G D
Sbjct: 386 DLSAL---------------CKEAGMVAL-RSSLDKIGLD 409



 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 90/222 (40%), Gaps = 29/222 (13%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAE-------- 52
           +M+ E   +R  + E  D+        E+  G  E    LK+ +E     ++        
Sbjct: 426 LMEIEPSATREYATEIPDV------KWEDIGGLDEVKDTLKILLEIPLTDSKLCREYSFT 479

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD--- 107
           +   +L  GP G GKT +A+        NF + SG  +A    G    +L ++  +    
Sbjct: 480 SPKGILLTGPSGTGKTLIAKAAGNSTKANFITISGLTLASHWKGQSEKILHDIFIKAKQS 539

Query: 108 ---VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164
              +LF DEI  +     ++     E     L++      ++        T++AAT R+ 
Sbjct: 540 APCILFFDEIDAIIRSRSDMSSNLTERLISQLVLEFDNLEKTNG-----VTVLAATNRID 594

Query: 165 LLTNPL--QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVT 204
           L+ + L  + RF   + LN  +I + + I++  ++   ++  
Sbjct: 595 LIDSVLIREGRFEYILELNLPDIHERECILKIHSRNLPISED 636


>gi|220905873|ref|YP_002481184.1| Hedgehog/intein hint domain-containing protein [Cyanothece sp. PCC
           7425]
 gi|219862484|gb|ACL42823.1| Hedgehog/intein hint domain protein [Cyanothece sp. PCC 7425]
          Length = 1232

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 36/102 (35%), Gaps = 4/102 (3%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +      RP+   +  GQ    + L      A  + +     LF GP G GKT+ A+++A
Sbjct: 4   EPLHHKYRPQKFADLVGQAAIATTL----TNAINQEKIAPAYLFTGPRGTGKTSSARILA 59

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRL 117
           + L         P      +    +      DV+ ID     
Sbjct: 60  KSLNCLQSEKPTPYPCGKCEACRTIAQGVALDVIEIDAASNT 101


>gi|146082384|ref|XP_001464496.1| peroxisome assembly protein [Leishmania infantum JPCM5]
          Length = 507

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/117 (29%), Positives = 50/117 (42%), Gaps = 15/117 (12%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQ 72
           + L+P    +  G  EA   L+  I+      E  +        VLF GPPG GKT LA+
Sbjct: 188 TKLQPVRWGDVGGMEEAKRELREMIQLPILHPEVFEKGMKKRTGVLFYGPPGCGKTLLAK 247

Query: 73  VVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIV 121
            VA E+ +NF S  GP +          ++  L     D    ++F DEI  L+   
Sbjct: 248 AVATEMSMNFISVKGPELINQYVGESERNIRLLFQRARDNSPCIVFFDEIDALAPAR 304


>gi|145488414|ref|XP_001430211.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124397307|emb|CAK62813.1| unnamed protein product [Paramecium tetraurelia]
          Length = 617

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 61/158 (38%), Gaps = 16/158 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DV 108
           +L  GPPG  KT LA+ +  +  + F +  GP I     GD    +  +  +       V
Sbjct: 393 ILLYGPPGCSKTLLARALCTQCNLAFIAVKGPEIFSKYVGDSEKTVREIFKKARICAPSV 452

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           LF DEI  ++   +      + D  L  ++ E     S    L    +IAAT R   +  
Sbjct: 453 LFFDEIDAIAPQRQGS--TDVSDRVLIQLLTEIDGFES----LKNVIIIAATNRPASIDK 506

Query: 169 PLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVT 204
            L    RF   + ++  + E  K I +   K   +   
Sbjct: 507 ALLRPGRFDHLVFVDVPDREGRKAIFEVNLKKMKVNDD 544


>gi|167949880|ref|ZP_02536954.1| ATP-dependent protease ATP-binding subunit [Endoriftia persephone
           'Hot96_1+Hot96_2']
 gi|110589388|gb|ABG77203.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Endoriftia
           persephone 'Hot96_1+Hot96_2']
          Length = 329

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/142 (27%), Positives = 64/142 (45%), Gaps = 29/142 (20%)

Query: 11  NVSQEDADISLLRP----RTLEEF-TGQVEACSNLKVFIEAAKARAEAL----------D 55
           + S E +  SL RP    +TL+++  GQ  A   L V +     R E+L           
Sbjct: 55  HESGEKSSDSLPRPHEINKTLDQYVIGQQRAKKVLSVAVYNHYKRLESLGKESDIELAKS 114

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNLEDRD---- 107
           ++L +GP G GKT LA+ +AR L V F       + +AG    D+  ++  L  +     
Sbjct: 115 NILLIGPTGSGKTLLAETLARLLDVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDV 174

Query: 108 ------VLFIDEIHRLSIIVEE 123
                 +++IDEI ++S   + 
Sbjct: 175 EKAQTGIVYIDEIDKISRKSDN 196


>gi|13242558|ref|NP_077572.1| EsV-1-87 [Ectocarpus siliculosus virus 1]
 gi|10697317|gb|AAG21804.1|AF210454_2 EsV-1-87 [Ectocarpus siliculosus virus 1]
          Length = 324

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 71/226 (31%), Gaps = 39/226 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP    E  G  ++ S L     AAK  +  + H+L  GP G GKT    ++  
Sbjct: 5   PWVEKYRPLCFSEVVGNKKSISLLSNL--AAKRVS--IPHLLICGPSGCGKTVCVDILCN 60

Query: 77  EL-----GVNFRSTSGPVIAKAGDLAALLTNLEDR-----------DVLFIDEIHRLSII 120
            +     G      S        ++   + N                ++ +DE   ++  
Sbjct: 61  TMIPENRGARMLRLSSFDERGIDNVRTTVKNFARGRVGTEPTPTIAKIVVLDEADSMTPG 120

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
             + L   M+ +                   +RF ++        +  P+Q R  I    
Sbjct: 121 AFQALRRIMDVYSST----------------TRFIIVC--NNSTKIIEPIQSRCAILRFS 162

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
              +   L+  +++   + G+         +A  + G  R A   L
Sbjct: 163 KV-DDAQLRLRIRQVCDMAGVEYDPGGIGALACVADGDVRSAINSL 207


>gi|325282515|ref|YP_004255056.1| anti-sigma H sporulation factor, LonB [Deinococcus proteolyticus
           MRP]
 gi|324314324|gb|ADY25439.1| anti-sigma H sporulation factor, LonB [Deinococcus proteolyticus
           MRP]
          Length = 824

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 53/270 (19%), Positives = 90/270 (33%), Gaps = 47/270 (17%)

Query: 41  KVFIEAAKARAEAL-------DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA 93
           +   +A   R E           ++F GPPG+GKT++AQ +A+ LG  +   +       
Sbjct: 347 RQLRKARAERGEISAEEVNKGPILVFTGPPGVGKTSIAQSIAKALGREYVRIALGGARDE 406

Query: 94  GDLA----------------ALLTNLEDRDVLFIDEIHRLSIIVE--------EILYPAM 129
            D+                  L +      V+ +DEI +L    +        E+L PA 
Sbjct: 407 SDIRGHRRTYIGSMPGRIIQGLRSAGTKNPVVLLDEIDKLGTSYQGDPSSALLEVLDPAQ 466

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
                D  +G       V ++LS    IA       +   L DR  +    ++ E E L 
Sbjct: 467 NQHFTDHYLG-------VPLDLSEVMFIATANYPDQIPEALMDRMEVIEFSSYIEQEKL- 518

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            I +R               +  ++          L + + ++   A  + + REI   A
Sbjct: 519 EIAKRYL-------VPRQLDQNGLKKNQITVTDPALEKLISNYTREAGVRNLEREIGTVA 571

Query: 250 LLRLAIDKMGFDQLDLRYLTMIARNFGGGP 279
                   +G D    R        + G P
Sbjct: 572 RKVARRIALG-DIKRARVTDAELERYLGKP 600


>gi|307110057|gb|EFN58294.1| hypothetical protein CHLNCDRAFT_142278 [Chlorella variabilis]
          Length = 640

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 64/266 (24%), Positives = 103/266 (38%), Gaps = 45/266 (16%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRT-----LEEFTGQVEACSNLKVFIEAAK------- 48
           M++  GL SR++         LRP++       +  G  EA S L+  +   K       
Sbjct: 169 MVEERGLSSRSILNN----PDLRPQSETTTKFADVKGVDEAKSELEEIVAYLKDPHKFTS 224

Query: 49  ARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA------KAGDLAALLTN 102
              +    VL VGPPG GKT LA+ +A E GV F  TSG           A  +  L   
Sbjct: 225 LGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFYTSGSEFEEMFVGVGARRVRDLFAA 284

Query: 103 LEDRD--VLFIDEIHRL----SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTL 156
            +     ++FIDEI  +    +   ++ +   +    ++L  G  PS   + I       
Sbjct: 285 AKKNAPCIVFIDEIDAIGGSRNPKDQQYMKMTLNQMLVEL-DGFKPSEGVIVI------- 336

Query: 157 IAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMR 214
            AAT     L   L    RF   + +   ++E  + I++             AA      
Sbjct: 337 -AATNFPESLDKALVRPGRFDRHVVVPNPDVEGRRQILE-----VHFEKIPRAADVDLKV 390

Query: 215 -SRGTPRIAGRLLRRVRDFAEVAHAK 239
            ++GTP  +G  L  + + A +  A+
Sbjct: 391 IAKGTPGFSGADLANLVNVAALKAAR 416


>gi|224284462|gb|ACN39965.1| unknown [Picea sitchensis]
          Length = 695

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 52/253 (20%), Positives = 85/253 (33%), Gaps = 23/253 (9%)

Query: 26  TLEEFTG-----QV--EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G     Q   E    LK         A     VL VGPPG GKT LA+ +A E 
Sbjct: 233 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA 292

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG           A  +  L    ++    ++F+DEI  +       +    +
Sbjct: 293 GVPFFSISGSEFVEMFVGIGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGND 352

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E               +IAAT R  +L   L    RF   + ++  +++
Sbjct: 353 EREQTLNQLLTEMDGFEGNTG----IIVIAATNRADILDAALLRPGRFDRQVSVDVPDVK 408

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
               I++                        +      LL      A       I+ +  
Sbjct: 409 GRTEILKVHGGNKKFDSDVSLGVIAMRTPGFSGADLANLLNEAAILAGRRGRSAISAKEI 468

Query: 247 DAALLRLAIDKMG 259
           D ++ R+     G
Sbjct: 469 DDSIDRIVAGMEG 481


>gi|158421766|ref|YP_001523058.1| ATPase [Azorhizobium caulinodans ORS 571]
 gi|158328655|dbj|BAF86140.1| ATPase [Azorhizobium caulinodans ORS 571]
          Length = 613

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 62/217 (28%), Gaps = 44/217 (20%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+  ++  GQ      L     + +         +  G  G+GKTT A+++AR L
Sbjct: 32  ARKYRPQNFDDLIGQEAMVRTLSNAFASGRIAQAY----ILTGVRGVGKTTTARILARAL 87

Query: 79  GVNFRSTS------------------------------GPVIAKAGDLAALLTNLEDRDV 108
                  S                                      D+  ++     R V
Sbjct: 88  NYEPMDGSPGGPSLDLSVFGKHCKDIIESRHVDVMEMDAASNTSINDIREIIEGSRYRPV 147

Query: 109 L------FIDEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAAT 160
           +       IDE+H LS      L   +E+    +  +       +     LSR       
Sbjct: 148 MARYKVYIIDEVHMLSTAAFNGLLKTLEEPPEHVKFIFATTEIRKVPVTVLSRCQRFDLR 207

Query: 161 TRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
                +      R      ++  + E L  IV R A+
Sbjct: 208 RVEAGVLAAHLSRICAKENVSV-DAEALS-IVARAAE 242


>gi|119513548|ref|ZP_01632566.1| Peptidase M41, FtsH [Nodularia spumigena CCY9414]
 gi|119461797|gb|EAW42816.1| Peptidase M41, FtsH [Nodularia spumigena CCY9414]
          Length = 628

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 61/266 (22%), Positives = 96/266 (36%), Gaps = 23/266 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
             ++  G  EA   L+  +   K         A     VL +GPPG GKT LA+ +A E 
Sbjct: 171 KFDDVAGIEEAKEELQEVVTFLKQPERFTAVGARIPKGVLLIGPPGTGKTLLAKAIAGEA 230

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG           A  +  L    +D    ++FIDEI  +       +    +
Sbjct: 231 GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKDNAPCIIFIDEIDAVGRQRGAGIGGGND 290

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E               +IAAT R  +L + L    RF   I ++  +I+
Sbjct: 291 EREQTLNQLLTEMDGFEGNTG----IIIIAATNRPDVLDSALLRPGRFDRQITVDAPDIK 346

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
               ++Q  A+   L  +             T      LL            + IT    
Sbjct: 347 GRLEVLQVHARNKKLDPSVSLDAIARRTPGFTGADLANLLNEAAILTARRRKEGITIREI 406

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIA 272
           D A+ R+     G   +D +   +IA
Sbjct: 407 DDAVDRVVAGMEGTPLVDSKSKRLIA 432


>gi|6760428|gb|AAF28347.1| calmodulin-binding protein [Arabidopsis thaliana]
 gi|6760430|gb|AAF28348.1| calmodulin-binding protein [Arabidopsis thaliana]
          Length = 1022

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 54/246 (21%), Positives = 94/246 (38%), Gaps = 33/246 (13%)

Query: 20  SLLR------PR-TLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPG 64
           S +R      P+   E+  GQ E  + L   +E  +   +A           +L  GPPG
Sbjct: 709 SAMREVILEVPKVNWEDVGGQNEVKNQLMEAVEWPQKHQDAFKRIGTRPPSGILMFGPPG 768

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLAALLTNLEDR------DVLFIDEIHR 116
             KT +A+ VA E  +NF +  GP +     G+    + +L  +       ++F DEI  
Sbjct: 769 CSKTLMARAVASEAKLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDS 828

Query: 117 LS--IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-- 172
           L+     E       +     L+V      + V       T+IAAT R   + + L    
Sbjct: 829 LASIRGKENDGVSVSDRVMSQLLVELDGLHQRVG-----VTVIAATNRPDKIDSALLRPG 883

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           RF   + +      D + I++   +    + +D    E+A  ++G       L+ R    
Sbjct: 884 RFDRLLYVGPPNETDREAILKIHLRKIPCS-SDICLKELASITKGYTGADISLICREAAI 942

Query: 233 AEVAHA 238
           A +  +
Sbjct: 943 AALEES 948



 Score = 45.8 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 8/75 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--V 108
           VL  GPPG GKT+LA+  AR  GVNF S +GP I           L  +  +  +     
Sbjct: 421 VLIHGPPGTGKTSLARTFARHSGVNFFSVNGPEIISQYLGESEKALDEVFRSASNATPAA 480

Query: 109 LFIDEIHRLSIIVEE 123
           +FID++  ++   +E
Sbjct: 481 VFIDDLDAIAPARKE 495


>gi|99082201|ref|YP_614355.1| ATP-dependent metalloprotease FtsH [Ruegeria sp. TM1040]
 gi|99038481|gb|ABF65093.1| ATP-dependent metalloprotease FtsH [Ruegeria sp. TM1040]
          Length = 637

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 54/251 (21%), Positives = 92/251 (36%), Gaps = 27/251 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  EA   L+  +E        ++   +     L VGPPG GKT LA+ +A E 
Sbjct: 152 TFDDVAGIDEAKEELEEIVEFLRNPQKFSRLGGKIPKGALLVGPPGTGKTLLARAIAGEA 211

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F + SG       V   A  +  +    +     ++FIDEI  +            +
Sbjct: 212 GVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKNAPCIVFIDEIDAVGRHRGAGYGGGND 271

Query: 131 DFQLD----LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
           + +      L+  +G  A    I L      AAT R  +L   L    RF   + +   +
Sbjct: 272 EREQTLNQLLVEMDGFEANEGVIIL------AATNRKDVLDPALLRPGRFDRNVTVGNPD 325

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           I+  + I+   A+ T L    +           +      L+      A     + +T E
Sbjct: 326 IKGREKILGVHARKTPLGADVDLRIIARGTPGFSGADLANLVNEAALMAARVGRRFVTME 385

Query: 245 IADAALLRLAI 255
             + A  ++ +
Sbjct: 386 DFENAKDKVMM 396


>gi|331091603|ref|ZP_08340437.1| hypothetical protein HMPREF9477_01080 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330403360|gb|EGG82919.1| hypothetical protein HMPREF9477_01080 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 666

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 55/257 (21%), Positives = 100/257 (38%), Gaps = 24/257 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEA-------LDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ EA  +L+  ++      +            L VGPPG GKT LA+ VA E 
Sbjct: 180 TFKDVAGQDEAKESLQEVVDFLHNPGKYTSIGAKLPKGALLVGPPGTGKTLLAKAVAGEA 239

Query: 79  GVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
            V F S SG            ++  DL     ++    ++FIDEI  +    +  +    
Sbjct: 240 KVPFFSLSGSAFVEMYVGVGASRVRDLFKQAQSMAP-CIIFIDEIDAIGKSRDNAMGSND 298

Query: 130 E-DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           E +  L+ ++ E     + K  L    L+AAT R  +L   L    RF   I ++  +++
Sbjct: 299 EREQTLNQLLAEMDGFDTDKGLL----LLAATNRPEILDPALLRPGRFDRRIIVDAPDLK 354

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
               +++  AK   +  T +        S         ++      A     + +++   
Sbjct: 355 GRVDVLKVHAKDVKMDETVDLEAIALATSGAVGSDLANMINEAAINAVKNGRQVVSQADL 414

Query: 247 DAALLRLAIDKMGFDQL 263
             A+  + + K   D++
Sbjct: 415 FEAVEVVLVGKEKKDRI 431


>gi|307111636|gb|EFN59870.1| hypothetical protein CHLNCDRAFT_33715 [Chlorella variabilis]
          Length = 757

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 52/247 (21%), Positives = 83/247 (33%), Gaps = 37/247 (14%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI   K R      +L  VGPPG+GKT++ + +AR L   +   S
Sbjct: 216 EDHYGLEDVKDRILEFIAVGKLRGSTQGKILCLVGPPGVGKTSIGRSIARALNRKYYRFS 275

Query: 87  GPVIAKAGDLAALLTNLED----------------RDVLFIDEIHRLSIIVE-------- 122
              ++   ++                            + IDEI +L    +        
Sbjct: 276 VGGLSDVAEIKGHRRTYVGAMPGKMVQCLKTTGTSNPFVLIDEIDKLGRGYQGDPASALL 335

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V ++LS+   +     +  +  PL DR  I IRL+ 
Sbjct: 336 ELLDPEQNSGFLD-------HYLDVPVDLSKVLFMCTANVLDTIPGPLLDRMEI-IRLSG 387

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  ++   I    A+          A       R T      L+      A V + K   
Sbjct: 388 YIFDEKVAI----ARTYLEPQARTNAGVPEGAVRVTDAALAALVDDYAREAGVRNLKKQL 443

Query: 243 REIADAA 249
            +I   A
Sbjct: 444 EKIYRKA 450


>gi|242399369|ref|YP_002994793.1| Pk-cdcA protein [Thermococcus sibiricus MM 739]
 gi|242265762|gb|ACS90444.1| Pk-cdcA protein [Thermococcus sibiricus MM 739]
          Length = 839

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 46/186 (24%), Positives = 72/186 (38%), Gaps = 23/186 (12%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
           T E+  G  +A   ++  +E      E            VL  GPPG GKT LA+ VA E
Sbjct: 211 TYEDIGGLKDAVQKIREMVELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVANE 270

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM 129
              +F + +GP I           L  +    E+    ++FIDEI  ++   EE+     
Sbjct: 271 ANAHFIAINGPEIMSKYYGESEERLRDIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVE 330

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
           +     L+            +  +  +I AT R   L   L+   RF   I +   + + 
Sbjct: 331 KRVVSQLLT-----LMDGLKSRGKVIVIGATNRPDALDPALRRPGRFDREIEVGVPDKQG 385

Query: 188 LKTIVQ 193
            K I+Q
Sbjct: 386 RKEILQ 391



 Score = 52.4 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 54/257 (21%), Positives = 91/257 (35%), Gaps = 24/257 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIE--------AAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
             ++  G       LK  +E          +        +L  GPPG GKT LA+ VA E
Sbjct: 546 RWDDIGGLENVKQELKEAVEWPLKYPKAFQRLGITPPKGILLYGPPGTGKTLLAKAVANE 605

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAM 129
              NF    GP +           +  +          V+FIDE+  ++      +    
Sbjct: 606 SEANFIGIRGPEVLSKWVGESEKRIREIFRKARQAAPTVVFIDEVDSIAP-----MRGGE 660

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            D   D ++ +  +        S   +IAAT R  +L   L    RF   I +   + + 
Sbjct: 661 GDRVTDRLINQLLTEMDGIEENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKA 720

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
              I++   +   LA +D +  E+A ++ G        L R   F  +  A +IT     
Sbjct: 721 RLEILKVHTRRVPLA-SDVSLQELAKKTEGYSGADLAALVREAAFVALRRAVSITSRDLV 779

Query: 248 AALLRLAIDKMGFDQLD 264
                  ++K+   + D
Sbjct: 780 EDQAEEFLEKLKVSKGD 796


>gi|313126645|ref|YP_004036915.1| ATPase AAA [Halogeometricum borinquense DSM 11551]
 gi|312293010|gb|ADQ67470.1| AAA family ATPase, CDC48 subfamily [Halogeometricum borinquense DSM
           11551]
          Length = 718

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 49/261 (18%), Positives = 90/261 (34%), Gaps = 29/261 (11%)

Query: 25  RTLEEFTGQVEACSNLKV----------FIEAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
            T ++  G  EA   L+             EAA         VL  GPPG GKT LA+ +
Sbjct: 456 TTFDDVGGLEEAKRTLERSVTWPLTYAPLFEAANT--SPPSGVLLHGPPGTGKTLLARAI 513

Query: 75  ARELGVNFRSTSGPVI------AKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILY 126
           A E  VNF   +GP +           +  +          ++F DEI  ++   + +  
Sbjct: 514 AGESEVNFIHVAGPELLDRYVGESEKSVREVFERARQAAPAIVFFDEIDAIATNRDAM-- 571

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
              +    + +V +  +     ++     ++AAT R   L   L    R    + +   +
Sbjct: 572 -GSDSGVGERVVSQLLTELDRLVDNPNVVVLAATNRKETLDPALLRPGRLESHVLVPQPD 630

Query: 185 IEDLKTIVQRGAKLTG----LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           ++  + I++   K       + + + AA    +       +      R  +    A+   
Sbjct: 631 VDARRAILEVHTKEKPLGDNVDLDELAAHMDGLSGADIQAVCRDATMRAIEAIADAYEGA 690

Query: 241 ITREIADAALLRLAIDKMGFD 261
              E AD  L+     +   D
Sbjct: 691 AANEHADEILVTQEHFEAALD 711



 Score = 47.4 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 55/237 (23%), Positives = 83/237 (35%), Gaps = 25/237 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
           T E+  G  E    ++  IE   +  E   H        VL  GPPG GKT +A+ VA E
Sbjct: 191 TYEDIGGLDEELDLVREMIELPLSEPEVFAHLGVDPPKGVLLHGPPGTGKTLIAKAVATE 250

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM 129
           +   F + SGP I           L             ++F DEI  ++   ++      
Sbjct: 251 VDATFITISGPEIMSKFKGESEEKLREKFEEARTNAPAIIFFDEIDSIATKRDDGGDVEN 310

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                 L + +G  AR          +I AT RV  L   L+   RF   I +       
Sbjct: 311 RVVGQLLSLMDGLDAR------GDVIVIGATNRVDSLDPALRRGGRFDREIEIGVPNEVG 364

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            + I++   +   LA  D     +A R+ G        L +      +  A+    E
Sbjct: 365 RREILEVHTRRMPLA-DDVDMDRLAARTHGFVGADLESLAKEAAMTALRRARRGGGE 420


>gi|163795453|ref|ZP_02189420.1| DNA polymerase III, gamma/tau subunits [alpha proteobacterium
           BAL199]
 gi|159179439|gb|EDP63970.1| DNA polymerase III, gamma/tau subunits [alpha proteobacterium
           BAL199]
          Length = 610

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 61/199 (30%), Gaps = 41/199 (20%)

Query: 12  VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA 71
            ++        RP+T E+  GQ      L+     A A+       +  G  G+GKTT A
Sbjct: 17  ATEYRVLARKYRPQTFEDLVGQETLVRTLR----NAFAQNRIHHAFVLTGVRGVGKTTTA 72

Query: 72  QV-----------------------------VARELGVNFRSTSGPVIAKAGDLAALLTN 102
           ++                             +A +  V+             D+  ++ +
Sbjct: 73  RIVAKGLNCIGPDGTGGPTMTPCGTCDNCVAIAGDRHVDVLEMDAASRTGVDDIREIIES 132

Query: 103 LEDRDVL------FIDEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRF 154
           +  R V        +DE+H L+      L   +E+    +  +       +     LSR 
Sbjct: 133 VRYRPVSARYKVYIVDEVHMLTRNAFNALLKTLEEPPEHVKFIFATTEIRKVPITVLSRC 192

Query: 155 TLIAATTRVGLLTNPLQDR 173
                      + + L ++
Sbjct: 193 QRFDLRRIDVAVLSELFEK 211


>gi|147919399|ref|YP_686862.1| proteasome-activating nucleotidase [uncultured methanogenic
           archaeon RC-I]
 gi|121685313|sp|Q0W257|PAN_UNCMA RecName: Full=Proteasome-activating nucleotidase; Short=PAN;
           AltName: Full=Proteasomal ATPase; AltName:
           Full=Proteasome regulatory ATPase; AltName:
           Full=Proteasome regulatory particle
 gi|110622258|emb|CAJ37536.1| 26s proteasome, regulatory subunit (proteasome-activating
           nucleotidase) [uncultured methanogenic archaeon RC-I]
          Length = 417

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 81/221 (36%), Gaps = 12/221 (5%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLT 101
           K   E    VL  GPPG GKT LA+ VA      F    G  +        A  +  L  
Sbjct: 187 KVGIEPPKGVLLYGPPGTGKTLLAKAVANRTKATFIRIIGSELVQKYIGEGARMVRELFE 246

Query: 102 NLEDR--DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA 159
             +++   ++FIDEI  +     + +     D ++   + +  +            ++AA
Sbjct: 247 LAKEKSPSIIFIDEIDSIGAKRLDSI--TSGDREVQRTLVQLLAEMDGFDPRGNVRILAA 304

Query: 160 TTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRG 217
           T R  +L   L    RF   I++     E  + I++  A+   LA   +      +    
Sbjct: 305 TNRPDILDPALLRPGRFDRMIKVPMPTAEAREQILKIHARKMNLADDVDLRKIALITDES 364

Query: 218 TPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKM 258
           +      ++     FA   +   +     +AA+ ++  ++ 
Sbjct: 365 SGADLSAIVMEAGMFAIRNNRDVVDSSDFNAAVAKVMGERN 405


>gi|322689829|ref|YP_004209563.1| zinc metallopeptidase [Bifidobacterium longum subsp. infantis 157F]
 gi|320461165|dbj|BAJ71785.1| zinc metallopeptidase [Bifidobacterium longum subsp. infantis 157F]
          Length = 697

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 49/208 (23%), Positives = 77/208 (37%), Gaps = 12/208 (5%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108
           VL  GPPG GKT LA+ +A E GV F S +G       V   A  +  L    +     +
Sbjct: 253 VLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEMFVGLGASRVRDLFDEAKKNAPAI 312

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +FIDEI  +       +    ++ +  L   +         N +   +IAAT R  +L  
Sbjct: 313 IFIDEIDAVGRKRGSGMGGGHDEREQTL--NQLLVEMDGFDNDTNLIIIAATNRPDVLDP 370

Query: 169 PLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
            L    RF   + +   ++E  + I++  AK        +           T      +L
Sbjct: 371 ALLRPGRFDRQVGVAAPDLEGREAILRVHAKGKPFVPDVDLHMVAVRTPGFTGADLANVL 430

Query: 227 RRVRDFAEVAHAKTITREIADAALLRLA 254
                    A A+ I     D A+ R+ 
Sbjct: 431 NEAALLCARAGAQLIDNRAIDEAIDRVQ 458


>gi|307825356|ref|ZP_07655575.1| chromosomal replication initiator protein DnaA [Methylobacter
           tundripaludum SV96]
 gi|307733531|gb|EFO04389.1| chromosomal replication initiator protein DnaA [Methylobacter
           tundripaludum SV96]
          Length = 438

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 48/260 (18%), Positives = 89/260 (34%), Gaps = 17/260 (6%)

Query: 26  TLEEFTGQVEACSNLKVFIEA--AKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFR 83
           T + F       + L        ++   +A + +L  G  GLGKT +   +   +     
Sbjct: 108 TFDNFV--EGKSNQLARAASMQVSENIGKAYNPLLIYGSSGLGKTHMMHAIGNAVLQKNP 165

Query: 84  STSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPS 143
           S +   +     +  ++  L+   +    E +R      ++L      F       +   
Sbjct: 166 SATVVYLHSEKFVQDMVKALQQNSINAFKEFYRGV----DVLLIDDIQFFAGKERSQEEF 221

Query: 144 ARSVKINLSRFTLIAATTRVGL-----LTNPLQDRF--GIPIRLNFYEIEDLKTIVQRGA 196
             +    L +   +  T          L + L+ RF  G+P+ +   ++E    I+ + A
Sbjct: 222 FHTFNTLLEKKHQVILTCDKYPKEIIGLEDRLKSRFGWGLPVLIEPPDMETRAAILMKKA 281

Query: 197 KLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAID 256
            L  + +  + A  IA R     R     LRRV   A+    + IT E    AL  L   
Sbjct: 282 ALVNIELAQDVAFFIAKRIPSNVRDLEGALRRVIANAQFTG-REITIEFTKEALHDLISL 340

Query: 257 KMGFDQLDLRYLTMIARNFG 276
           +     +D      +A  F 
Sbjct: 341 QDKLVNID-NIQKTVAEYFK 359


>gi|302828974|ref|XP_002946054.1| hypothetical protein VOLCADRAFT_115636 [Volvox carteri f.
           nagariensis]
 gi|300268869|gb|EFJ53049.1| hypothetical protein VOLCADRAFT_115636 [Volvox carteri f.
           nagariensis]
          Length = 579

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/211 (20%), Positives = 77/211 (36%), Gaps = 12/211 (5%)

Query: 57  VLFVGPPGLGKTTLAQVV-ARELGVNFRSTSGPVIAK-----AGDLAALLTNLE--DRDV 108
           VLF GPPG GKTT A+V+ ++            V++K        L A+    E     +
Sbjct: 332 VLFEGPPGTGKTTSARVISSQAAVPLIYLPLEAVLSKWYGQSEQQLGAVFKAAEAMGGAI 391

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +F+DE+  L    E      +    L +++ E            R  +I AT R   L  
Sbjct: 392 IFLDELDALGGNREAGGLHEVSRRLLSVLLRE---MEGFDAETKRTVVIGATNRKTDLDP 448

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            L  RF + I     +    + I+++ A+    +   + A      S    R       R
Sbjct: 449 ALLSRFDLVITFGLPDTACRQLILRQYAQQLSDSEVVQLAERTGGMSGRDLRDVCEHTER 508

Query: 229 VRDFAEVAHAKTITREIADAALLRLAIDKMG 259
            R  +++   +    ++   A    + D+  
Sbjct: 509 -RWASKIIRGEVREEDLPPLAEYLASADERA 538


>gi|296818011|ref|XP_002849342.1| ATP-dependent protease La [Arthroderma otae CBS 113480]
 gi|238839795|gb|EEQ29457.1| ATP-dependent protease La [Arthroderma otae CBS 113480]
          Length = 1070

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 71/192 (36%), Gaps = 33/192 (17%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI   K R      +L FVGPPG+GKT++ + +AR L   +   S
Sbjct: 537 EDHYGLKDVKDRILEFIAVGKLRGTVEGKILCFVGPPGVGKTSIGKSIARALNRQYYRFS 596

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDEI ++    +        
Sbjct: 597 VGGLTDVAEIKGHRRTYVGALPGRIIQALKKCQTENPLILIDEIDKIGRGHQGDPASALL 656

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           + ++LS+   +        +  PL DR  + I L+ 
Sbjct: 657 ELLDPEQNSSFLD-------HYMDIPVDLSKVLFVCTANMTDTIPRPLLDRMEL-IELSG 708

Query: 183 YEIEDLKTIVQR 194
           Y  ++   I +R
Sbjct: 709 YVADEKMAIAER 720


>gi|223985489|ref|ZP_03635548.1| hypothetical protein HOLDEFILI_02854 [Holdemania filiformis DSM
           12042]
 gi|223962578|gb|EEF67031.1| hypothetical protein HOLDEFILI_02854 [Holdemania filiformis DSM
           12042]
          Length = 619

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/187 (25%), Positives = 75/187 (40%), Gaps = 20/187 (10%)

Query: 25  RTLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +T ++  GQ EA   L   +       +  K  A+     L VGPPG GKT LA+ VA E
Sbjct: 163 KTFQDVAGQDEAKEALSEIVDFLHNPDKYKKLGAKMPKGALLVGPPGTGKTLLAKAVAGE 222

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
             V F S SG           A  +  L    +++   ++FIDEI  +    +       
Sbjct: 223 ANVPFFSISGSEFVEMFVGMGAARVRDLFKQAQEKAPCIVFIDEIDTIGKKRDSANGMGG 282

Query: 130 EDFQLDLMVGEGPSARSVKINLSR-FTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
            D +   +      A     + S+   ++AAT R   L   L    RF   I +   +++
Sbjct: 283 NDEREQTLNQL--LAEMDGFDGSKGVVILAATNRPETLDKALLRPGRFDRRIPVELPDLK 340

Query: 187 DLKTIVQ 193
             + I++
Sbjct: 341 GREEILK 347


>gi|188527438|ref|YP_001910125.1| DNA polymerase III subunits gamma and tau [Helicobacter pylori
           Shi470]
 gi|188143678|gb|ACD48095.1| DNA polymerase III subunits gamma and tau [Helicobacter pylori
           Shi470]
          Length = 571

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 78/256 (30%), Gaps = 59/256 (23%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA------- 75
           RP+   E  GQ      L + ++  +         LF G  G GKT+ +++ A       
Sbjct: 9   RPKHFSELVGQESVAKTLSLALDNQRLANAY----LFSGLRGSGKTSSSRIFARALMCEK 64

Query: 76  -----------------RELGVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFID 112
                                ++     G       D+  L+             +  ID
Sbjct: 65  GPKAVPCDTCTQCQSALNNHHIDIIEMDGASNRGIDDVRNLIEQTRYKPSFGRYKIFIID 124

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H  +      L   +E+                    S    + ATT    L   +  
Sbjct: 125 EVHMFTTEAFNALLKTLEE------------------PPSHVKFLLATTDALKLPATILS 166

Query: 173 R---FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           R   F          I  LKTI++       ++    A  ++A   +G+ R    LL + 
Sbjct: 167 RTQHFRFKKIPENSVISHLKTILE----KEQVSYETSALEKLAHSGQGSLRDTITLLEQA 222

Query: 230 RDFAEVAHAKTITREI 245
            ++ + A  ++   E+
Sbjct: 223 INYCDNAITESKVAEM 238


>gi|156355986|ref|XP_001623713.1| predicted protein [Nematostella vectensis]
 gi|156210439|gb|EDO31613.1| predicted protein [Nematostella vectensis]
          Length = 825

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 61/343 (17%), Positives = 120/343 (34%), Gaps = 72/343 (20%)

Query: 13  SQEDADISLLRPRTLEE-FTGQVEACSNLKVFIEAAK-ARAEALDHVLFVGPPGLGKTTL 70
           S+E+ DI   R   L+E   G  +    +  FI  ++  R+     + F GPPG+GKT++
Sbjct: 357 SEENLDIERAR-TVLDEDHYGLQDIKDRILEFIAVSQLNRSTQGKILCFTGPPGVGKTSI 415

Query: 71  AQVVARELGVNFRSTSGPVIAKAGDLAALLTNL----------------EDRDVLFIDEI 114
           A+ +AR L   +   S   +    ++                        +  ++ IDE+
Sbjct: 416 AKSIARALNREYFRFSVGGMTDVAEIKGHRRTYIGAMPGKIIQCLKKTKTENPLILIDEV 475

Query: 115 HRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
            ++   V+        E+L P      LD           V +++S+   I        +
Sbjct: 476 DKIGRGVQGDPASALLELLDPEQNAGFLD-------HYLDVPVDMSKVLFICTANVTDTI 528

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
             PL+DR  + + ++ Y  ++ K I +       +AV                       
Sbjct: 529 PGPLKDRMEM-MNVSGYVEDEKKAIAKEHIDKVNIAVHKGGEEM---------------- 571

Query: 227 RRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETIS 286
                            +  + A+ +   +  G + +D  +     + F G         
Sbjct: 572 -----------GGQEHIDKVNIAVHKGGEEMGGQEHIDKIFRKAALKIFQGTE------- 613

Query: 287 AGLSEPRDAIED-LIEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
             ++   DA++D +  P         +TP G ++M +AW  +G
Sbjct: 614 -AIAVTPDALKDFVGNPVFNTDRIYDQTPPG-VVMGLAWTSMG 654


>gi|308812448|ref|XP_003083531.1| cell division protein (ISS) [Ostreococcus tauri]
 gi|116055412|emb|CAL58080.1| cell division protein (ISS) [Ostreococcus tauri]
          Length = 785

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 59/263 (22%), Positives = 90/263 (34%), Gaps = 34/263 (12%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARA-------EALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  GQ    S  +  I+  K          EA   +L  GPPG GKT LA+ VA E 
Sbjct: 300 RFSDVAGQDMVVSEFQTIIDIMKGNPKYKGRFVEAPKGILLEGPPGTGKTLLAKAVAGEA 359

Query: 79  GVNFRSTSGPVIAK--AGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYP--- 127
           G+ F   +G    +   G  A+ + NL  R       ++FIDE+  +        +    
Sbjct: 360 GLPFFYANGSEFVEMFVGVAASRMRNLFKRARTNAPAIIFIDELDTIGRSRASNAFRDDS 419

Query: 128 -AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNF-Y 183
            +  +  L  M+ E       K +     +I AT     L   L    RF     +    
Sbjct: 420 TSEREQGLMQMLVEMDGF-DNKESGEAVLVIGATNLASQLDPALLRSGRFDRVFHIGVPP 478

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
             E    I+Q  A+   +    +   E               L RV D         +  
Sbjct: 479 TAEARMPILQVHARKLNINRAGDEKYE-----------TDAFLHRVADLTTGFSGAELAN 527

Query: 244 EIADAALLRLAIDKMGFDQLDLR 266
            + +AA+L +  DK   D  D+ 
Sbjct: 528 LLNEAAILSVRNDKDVIDIADIE 550


>gi|308799295|ref|XP_003074428.1| putative transitional endoplasmic reticulum ATPase (ISS)
           [Ostreococcus tauri]
 gi|116000599|emb|CAL50279.1| putative transitional endoplasmic reticulum ATPase (ISS)
           [Ostreococcus tauri]
          Length = 1228

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 52/260 (20%), Positives = 91/260 (35%), Gaps = 33/260 (12%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------------VLFVGPPGLGKTTLA 71
            L++  G  +     K   +  +     L H              +L  GPPG GKT +A
Sbjct: 237 RLDD-VGYDDVGGVRKQMAQIRELVELPLRHPTLFKTIGVKPPKGILLYGPPGSGKTLIA 295

Query: 72  QVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEE 123
           + VA E G  F   +GP I          +L       E     ++FIDEI  ++   E+
Sbjct: 296 RAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDEIDSIAPKREK 355

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
                        +V +  +      + S   ++ AT R   +   L+ RFG   R    
Sbjct: 356 -----TNGEVERRIVSQLLTLMDGMKSRSHIIVMGATNRPNSIDPALR-RFGRFDREIDI 409

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            + D    ++   ++    +  + A ++   S+ T    G  L  +   A +   + I  
Sbjct: 410 GVPDEVGRLE-VLRIHTKNMKLDEAVDLEKISKETHGYVGADLAALSTEAAL---QCIRE 465

Query: 244 EIADAALLRLAIDKMGFDQL 263
           ++    L    ID    D +
Sbjct: 466 KMDLIDLEDEEIDAAVLDSM 485



 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 44/255 (17%), Positives = 84/255 (32%), Gaps = 21/255 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVARE 77
           + ++  G       L+  ++      E            VLF GPPG GKT LA+ +A E
Sbjct: 515 SWDDIGGLETVKQELQETVQYPVEHPEKFEKFGMAPSKGVLFYGPPGCGKTLLAKAIANE 574

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
              NF S  GP +          ++  +          VLF DE+  ++         A 
Sbjct: 575 CQANFISIKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGGNQGDA- 633

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                D ++ +  +      +     +I AT R  ++   L    R    + +   +   
Sbjct: 634 -GGAADRVLNQLLTEMDGMGSKKTVFIIGATNRPDIIDTALMRPGRLDQLVYIPLPDEPS 692

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
             +I +   + + +A   +        +  +      + +R   +A              
Sbjct: 693 RLSIFKANLRKSPIAADVDLNVLAKFTNGFSGADITEICQRACKYAIRESIARDIEAERA 752

Query: 248 AALLRLAI-DKMGFD 261
           AA+   A+ D+   D
Sbjct: 753 AAMNPDAMTDETADD 767


>gi|50291367|ref|XP_448116.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49527427|emb|CAG61067.1| unnamed protein product [Candida glabrata]
          Length = 830

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 52/254 (20%), Positives = 85/254 (33%), Gaps = 23/254 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
           T ++  G  E    LK  +E      +            VLF GPPG GKT LA+ VA E
Sbjct: 485 TWDDVGGLDEIKEELKETVEYPVLHPDQYTKFGLAPSKGVLFYGPPGTGKTLLAKAVATE 544

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAM 129
           +  NF S  GP +          ++  +          V+F+DE+  ++      L  A 
Sbjct: 545 VSANFISVKGPELLSMWYGESESNIRDIFDKARAAAPTVVFLDELDSIAKARGGSLGDA- 603

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                D +V +  +            +I AT R   +   +    R    I +   +   
Sbjct: 604 -GGASDRVVNQLLTEMDGMNAKKNVFVIGATNRPDQIDPAILRPGRLDQLIYVPLPDEPA 662

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
             +I++   + T L   +      A+           L   V+  A+ A   +I      
Sbjct: 663 RLSILKAQLRKTPL---EPGLDLTAIAKATQGFSGADLSYIVQRAAKYAIKDSIEAHRES 719

Query: 248 AALLRLAIDKMGFD 261
            A     +   G D
Sbjct: 720 LAAAEAEVKTEGGD 733



 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/132 (26%), Positives = 53/132 (40%), Gaps = 14/132 (10%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLED 105
           +    VL  GPPG GKT +A+ VA E G  F   +GP +          +L       E 
Sbjct: 246 KPPRGVLMYGPPGTGKTLMARAVANETGAFFFLINGPEVMSKMAGESESNLRKAFEEAEK 305

Query: 106 R--DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
               ++FIDEI  ++   ++             +V +  +        S   +IAAT R 
Sbjct: 306 NAPAIIFIDEIDSIAPKRDK-----TNGEVERRVVSQLLTLMDGMKARSNVVVIAATNRP 360

Query: 164 GLLTNPLQDRFG 175
             +   L+ RFG
Sbjct: 361 NSIDPALR-RFG 371


>gi|326472526|gb|EGD96535.1| lon proteinase [Trichophyton tonsurans CBS 112818]
          Length = 819

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 71/192 (36%), Gaps = 33/192 (17%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI   K R      +L FVGPPG+GKT++ + +AR L   +   S
Sbjct: 284 EDHYGLKDVKDRILEFIAVGKLRGTVEGKILCFVGPPGVGKTSIGKSIARALNREYYRFS 343

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ ++    +        
Sbjct: 344 VGGLTDVAEIKGHRRTYVGALPGRIIQALKKCQTENPLILIDEVDKIGRGHQGDPASALL 403

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           + ++LS+   +        +  PL DR  + I L+ 
Sbjct: 404 ELLDPEQNSSFLD-------HYMDIPVDLSKVLFVCTANMTDTIPRPLLDRMEL-IELSG 455

Query: 183 YEIEDLKTIVQR 194
           Y  ++   I +R
Sbjct: 456 YVADEKMAIAER 467


>gi|308063496|gb|ADO05383.1| DNA polymerase III subunits gamma and tau [Helicobacter pylori
           Sat464]
          Length = 571

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 78/256 (30%), Gaps = 59/256 (23%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA------- 75
           RP+   E  GQ      L + ++  +         LF G  G GKT+ +++ A       
Sbjct: 9   RPKHFSELVGQESVAKTLSLALDNQRLANAY----LFSGLRGSGKTSSSRIFARALMCEK 64

Query: 76  -----------------RELGVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFID 112
                                ++     G       D+  L+             +  ID
Sbjct: 65  GPKAVPCDTCTQCQSTLNNHHIDIIEMDGASNRGIDDVRNLIEQTRYKPSFGRYKIFIID 124

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H  +      L   +E+                    S    + ATT    L   +  
Sbjct: 125 EVHMFTTEAFNALLKTLEE------------------PPSHVKFLLATTDALKLPATILS 166

Query: 173 R---FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           R   F          I  LKTI++       ++    A  ++A   +G+ R    LL + 
Sbjct: 167 RTQHFRFKKIPENSVISHLKTILE----KEQVSYETSALEKLAHSGQGSLRDTITLLEQA 222

Query: 230 RDFAEVAHAKTITREI 245
            ++ + A  ++   E+
Sbjct: 223 INYCDNAITESKVAEM 238


>gi|305663571|ref|YP_003859859.1| AAA family ATPase, CDC48 subfamily [Ignisphaera aggregans DSM
           17230]
 gi|304378140|gb|ADM27979.1| AAA family ATPase, CDC48 subfamily [Ignisphaera aggregans DSM
           17230]
          Length = 737

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/188 (23%), Positives = 69/188 (36%), Gaps = 24/188 (12%)

Query: 24  PR-TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVV 74
           PR T E+     E    ++  +E      E            +L  GPPG GKT LA+ +
Sbjct: 192 PRVTWEDIGDLEEVKEKIREIVELPLKHPELFERLGIEPPKGILLYGPPGCGKTLLAKAL 251

Query: 75  ARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILY 126
           A E G  F   +GP I           L  +    +     ++FIDEI  L+   EE++ 
Sbjct: 252 ANETGAYFIPINGPEIMSKFYGESEQRLRQIFDEAKKNAPAIIFIDEIDALAPKREEVVG 311

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
              +     L+               R  +I AT R   +   L+   RF   I +   +
Sbjct: 312 EVEKRVVAQLLT-----LMDGLEERGRVIVIGATNRPDAVDPALRRPGRFDREIEVPPPD 366

Query: 185 IEDLKTIV 192
            +  + I+
Sbjct: 367 KKARREIL 374



 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 76/226 (33%), Gaps = 23/226 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIE--------AAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
             ++  G       L+  +E          +        +L  GPPG GKT LA+  A E
Sbjct: 469 RWDDIGGLDLVKQQLREAVEWPLRFPQIFEQMGIRPPKGILLYGPPGCGKTLLAKAAATE 528

Query: 78  LGVNFRSTSGPVI--AKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAM 129
            G NF +  GP I     G+    +  +          ++F DEI  ++ +    +    
Sbjct: 529 SGANFIAVKGPEILSKWVGESEKAVREIFRRARRAAPAIIFFDEIDAIAPVRGHDV---- 584

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                D +V +  +       L    +I AT R  LL   L    RF   I +   ++  
Sbjct: 585 -SGVTDRIVNQLLTEMDGIEPLRGVVVIGATNRPDLLDPALLRPGRFDRIIFVPPPDLRA 643

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
              I++   +   LA   +      M    +      L+R     A
Sbjct: 644 RYEILKIHTRKIPLADDVDLVQLAKMTEGYSGADLEALVREAVMLA 689


>gi|300114321|ref|YP_003760896.1| ATP-dependent metalloprotease FtsH [Nitrosococcus watsonii C-113]
 gi|299540258|gb|ADJ28575.1| ATP-dependent metalloprotease FtsH [Nitrosococcus watsonii C-113]
          Length = 644

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 61/258 (23%), Positives = 97/258 (37%), Gaps = 41/258 (15%)

Query: 24  PR-TLEEFTGQVEACSNLKVFIEAAK-------ARAEALDHVLFVGPPGLGKTTLAQVVA 75
           P+ T ++  G  EA   L+  I   +               VL  GPPG GKT LA+ +A
Sbjct: 169 PKVTFDDVAGVEEAKEELREIITFLRDPSLIQDLGGRMPKGVLLAGPPGTGKTLLARAIA 228

Query: 76  RELGVNFRSTSGPVIA------KAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYP 127
            E  V F + SG           A     L      +   ++FIDE+  +       +  
Sbjct: 229 GEARVPFFNISGSEFIELFVGVGAARARDLFEQARQKAPCIIFIDELDAIGRTRAGAVSM 288

Query: 128 AMEDFQ-------LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPI 178
              D +       L  M G  PSA  V        ++AAT R  +L   L    RF   +
Sbjct: 289 GGHDEREQTLNQLLVEMDGFDPSAGVV--------VMAATNRAEILDKALLRAGRFDRRV 340

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA-- 236
            ++   +E    I++  A+   L        ++ + ++ TP   G  L  + + A +   
Sbjct: 341 LVDKPNLEGRIEILKIHARTLKLGQD----VDLKVVAQRTPGFVGADLANIANEAALHGV 396

Query: 237 --HAKTITREIADAALLR 252
               K IT +  +AA+ R
Sbjct: 397 RMGHKAITLDDFEAAVDR 414


>gi|227546578|ref|ZP_03976627.1| M41 family endopeptidase FtsH [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|312133974|ref|YP_004001313.1| hflb [Bifidobacterium longum subsp. longum BBMN68]
 gi|227212895|gb|EEI80774.1| M41 family endopeptidase FtsH [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|311773273|gb|ADQ02761.1| HflB [Bifidobacterium longum subsp. longum BBMN68]
          Length = 696

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 49/208 (23%), Positives = 77/208 (37%), Gaps = 12/208 (5%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108
           VL  GPPG GKT LA+ +A E GV F S +G       V   A  +  L    +     +
Sbjct: 252 VLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEMFVGLGASRVRDLFDEAKKNAPAI 311

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +FIDEI  +       +    ++ +  L   +         N +   +IAAT R  +L  
Sbjct: 312 IFIDEIDAVGRKRGSGMGGGHDEREQTL--NQLLVEMDGFDNDTNLIIIAATNRPDVLDP 369

Query: 169 PLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
            L    RF   + +   ++E  + I++  AK        +           T      +L
Sbjct: 370 ALLRPGRFDRQVGVAAPDLEGREAILRVHAKGKPFVPDVDLHMVAVRTPGFTGADLANVL 429

Query: 227 RRVRDFAEVAHAKTITREIADAALLRLA 254
                    A A+ I     D A+ R+ 
Sbjct: 430 NEAALLCARAGAQLIDNRAIDEAIDRVQ 457


>gi|189217796|ref|NP_001121338.1| ATPase family, AAA domain containing 2B [Xenopus laevis]
 gi|171847168|gb|AAI61705.1| LOC100158428 protein [Xenopus laevis]
          Length = 872

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/186 (23%), Positives = 73/186 (39%), Gaps = 26/186 (13%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTS------GPVIAK-AGDLAALL 100
           K R +     LF GPPG GKT +A+ +A E     +  S         ++K  G+    L
Sbjct: 397 KFRIQPPRGCLFYGPPGTGKTLVARALANECSQGDKKVSFFMRKGADCLSKWVGESERQL 456

Query: 101 TNLEDR------DVLFIDEIHRLSII---VEEILYPAMEDFQLDLMVGEGPSARSVKINL 151
             L D+       ++F DEI  L+ +    ++ ++ ++    L LM G       V I  
Sbjct: 457 RLLFDQAYVMRPSIIFFDEIDGLAPVRSSRQDQIHSSIVSTLLALMDGLDNRGEIVVI-- 514

Query: 152 SRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAAC 209
                  AT R+  +   L+   RF         + +  K I+Q   +     ++D    
Sbjct: 515 ------GATNRLDSIDPALRRPGRFDREFLFGLPDQKARKHILQIHTRDWNPKLSDSFLE 568

Query: 210 EIAMRS 215
           E+A + 
Sbjct: 569 ELAEKC 574


>gi|110669061|ref|YP_658872.1| AAA-type ATPase (transitional ATPase homolog) [Haloquadratum
           walsbyi DSM 16790]
 gi|109626808|emb|CAJ53276.1| AAA-type ATPase (transitional ATPase homolog) [Haloquadratum
           walsbyi DSM 16790]
          Length = 742

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 57/296 (19%), Positives = 99/296 (33%), Gaps = 36/296 (12%)

Query: 11  NVSQEDADISLLR------PR-TLEEFTGQVEACSNLKVFIE---AAKARAE-----ALD 55
           N +  D + S +R      P+ + ++  G       +K  +E    ++ R E     A  
Sbjct: 438 NDALSDVEPSAMREVLVELPKVSWDDVGGLEGPTQKVKESVEWPITSRGRFERMGIDAPK 497

Query: 56  HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDR------D 107
            VL  GPPG GKT +A+ VA E   NF S  GP  +    G+    +     +       
Sbjct: 498 GVLLYGPPGTGKTLIAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFRKARQVSPT 557

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           V+F DE+  L+          + +  ++ ++ E               ++AAT R  ++ 
Sbjct: 558 VIFFDELDSLAPSRGGGTGNNVSERVVNQLLTELDGLEEN----GNVMVVAATNRPDMID 613

Query: 168 NPLQ-----DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
             L      DR  +  +      E +  I  R + L      D +  EIA  + G     
Sbjct: 614 PALIRSGRFDRLVLIGQPGEEGREQILKIHTRNSPL----APDVSLREIAEITDGYVGSD 669

Query: 223 GRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
              + R      +                 +   +       + Y   +   F GG
Sbjct: 670 LESIAREAAIEALREDGDAQEIEMRHFRKAMESVRATITDDLMNYYEDMQEEFKGG 725



 Score = 52.4 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 49/199 (24%), Positives = 73/199 (36%), Gaps = 23/199 (11%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLT 101
           K   E    VL  GPPG GKT LA+ VA E   +F S +GP I           L  +  
Sbjct: 217 KLGIEPPQGVLLHGPPGTGKTLLAKAVANETSASFFSIAGPEIISKYYGESEQQLREIFE 276

Query: 102 NLEDR--DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA 159
           +  +    ++FIDE+  ++   E++           L+               +  +I A
Sbjct: 277 DATEESPSIIFIDELDSIAPKREDVTGEVERRVVAQLLTM-----MDGLETRGQVIVIGA 331

Query: 160 TTRVGLLTNPLQ-----DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEI--- 211
           T RV  +   L+     DR       +    +++  I  RG  L+     D  A E    
Sbjct: 332 TNRVDSVDPALRRPGRFDREIEIGVPDEVGRKEILQIHTRGMPLSDDVSLDYLADETHGF 391

Query: 212 --AMRSRGTPRIAGRLLRR 228
             A     T   A + LRR
Sbjct: 392 VGADIESLTKEAAMKALRR 410


>gi|157126628|ref|XP_001654680.1| spermatogenesis associated factor [Aedes aegypti]
 gi|108873203|gb|EAT37428.1| spermatogenesis associated factor [Aedes aegypti]
          Length = 803

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/257 (17%), Positives = 83/257 (32%), Gaps = 28/257 (10%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVAR 76
            T  +  G       L+  ++      +            VLF GPPG GKT LA+ +A 
Sbjct: 471 TTWHDIGGLENVKRELQELVQYPVEHPDKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIAN 530

Query: 77  ELGVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127
           E   NF S  GP +         A   D+     +     VLF DE+  ++      +  
Sbjct: 531 ECQANFISVKGPELLTMWFGESEANVRDIFDKARSASP-CVLFFDELDSIAKSRGGNVGD 589

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           A      D ++ +  +            +I AT R  ++   +    R    I +   + 
Sbjct: 590 A--GGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDD 647

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA------EVAHAK 239
           +  + I++   + + +A   +      +    +      + +R    A           +
Sbjct: 648 KSREAILKANLRKSPVAGDVDLTYVAKVTQGFSGADLTEICQRACKLAIRQAIEAEIRRE 707

Query: 240 TITREIADAALLRLAID 256
               E   +A+     D
Sbjct: 708 RERTEGQSSAMDMDEDD 724



 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 52/263 (19%), Positives = 91/263 (34%), Gaps = 38/263 (14%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARA--------EALDHVLFVGPPGLGKTTLAQVVARELG 79
           ++  G  +  + +K  +E              +    +L  GPPG GKT +A+ VA E G
Sbjct: 201 DDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVANETG 260

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMED 131
             F   +GP I          +L       E +   ++FIDE+  ++   E+        
Sbjct: 261 AFFFLINGPEIMSKLAGESESNLRKAFEEAEKKSPAIIFIDELDAIAPKREKTHGEVERR 320

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
               L+       +S     S   ++AAT R   +   L+   RF   I +   +     
Sbjct: 321 IVSQLLTLMDGMKKS-----SHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRL 375

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            +++  +K   LA  D    +IA  S G        L               +       
Sbjct: 376 EVLRIHSKNMKLA-DDVDLEQIAAESHGHVGADLASL--------------CSEAALQQI 420

Query: 250 LLRLAIDKMGFDQLDLRYLTMIA 272
             ++ +  +  DQ+D   L  +A
Sbjct: 421 REKMDLIDLEDDQIDAEVLNSLA 443


>gi|185132242|ref|NP_001117982.1| valosin containing protein [Oncorhynchus mykiss]
 gi|51949893|gb|AAU14869.1| valosin containing protein [Oncorhynchus mykiss]
          Length = 748

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 50/266 (18%), Positives = 90/266 (33%), Gaps = 32/266 (12%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------------VLFVGPPGLGKTTLA 71
           +L E  G  +     K   +  +     L H              +L  GPPG GKT +A
Sbjct: 139 SLNE-VGYDDIGGVRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 197

Query: 72  QVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEE 123
           + VA E G  F   +GP I          +L       E     ++FIDE+  ++   E+
Sbjct: 198 RAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK 257

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLN 181
                        +V +  +        +   ++AAT R   +   L+   RF   + + 
Sbjct: 258 -----THGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDAALRRFGRFDREVDIG 312

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
             +      I+Q   K   L+  D    ++A ++ G        L       +    K  
Sbjct: 313 IPDATGRLEILQIHTKNMKLS-DDVDLEQVANQTHGHVGADLAAL-CSEAALQAIRKKMD 370

Query: 242 TREIADAALLRLAIDKMGFDQLDLRY 267
             ++ D  +    ++ +     D R+
Sbjct: 371 LIDLEDETIDAEVMNSLAVTMDDFRW 396



 Score = 50.5 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 68/197 (34%), Gaps = 20/197 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVARE 77
           + E+  G  +    L+  ++      +            VLF GPPG GKT LA+ +A E
Sbjct: 417 SWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 476

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
              NF S  GP +          ++  +          VLF DE+  ++           
Sbjct: 477 CQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGN--AGD 534

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                D ++ +  +      +     +I AT R  ++   +    R    I +   + + 
Sbjct: 535 GGGAADRVINQILTEMDGMSSKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKS 594

Query: 188 LKTIVQRGAKLTGLAVT 204
              I+    + + +A  
Sbjct: 595 RINILGANLRKSPIAKD 611


>gi|328541815|ref|YP_004301924.1| DNA polymerase III subunits gamma and tau [polymorphum gilvum
           SL003B-26A1]
 gi|326411567|gb|ADZ68630.1| DNA polymerase III subunits gamma and tau [Polymorphum gilvum
           SL003B-26A1]
          Length = 673

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 58/300 (19%), Positives = 88/300 (29%), Gaps = 59/300 (19%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+T ++  GQ      L    E A A        +  G  G+GKTT A+++AR L
Sbjct: 42  ARKYRPQTFDDLVGQEPMVQTL----ENAFATGRIAQAWMLTGVRGVGKTTTARILARGL 97

Query: 79  GVNF-----------------------------RSTSGPVIAKAGDLAALLTNLEDRD-- 107
                                                        D+  +      R   
Sbjct: 98  NYEIPGEADRPTVRLSREGTHCRAIMEGRHVDVIEMDAASHTGINDIREITDAARYRPAT 157

Query: 108 ----VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
               V  IDE+H LS      L   +E+                         I ATT +
Sbjct: 158 ARYKVYIIDEVHMLSNAAFNGLLKTLEE------------------PPEHVKFIFATTEI 199

Query: 164 GLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAG 223
             +   +  R      L   E   L  +++R +   G+ ++DEA   IA    G+ R + 
Sbjct: 200 RKVPVTVLSRCQ-RFDLRRIEQPKLVGLLRRISDAEGIDISDEALSLIARAGEGSARDSL 258

Query: 224 RLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIE 283
            LL +              RE+   A     ID  G   +  R    +    G    G +
Sbjct: 259 SLLDQAIAHGAGHIDAVQVREMLGLADRARVIDLFG-HVMAGRVAEALEELAGQYASGAD 317


>gi|322691768|ref|YP_004221338.1| zinc metallopeptidase [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|320456624|dbj|BAJ67246.1| zinc metallopeptidase [Bifidobacterium longum subsp. longum JCM
           1217]
          Length = 696

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 49/208 (23%), Positives = 77/208 (37%), Gaps = 12/208 (5%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108
           VL  GPPG GKT LA+ +A E GV F S +G       V   A  +  L    +     +
Sbjct: 252 VLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEMFVGLGASRVRDLFDEAKKNAPAI 311

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +FIDEI  +       +    ++ +  L   +         N +   +IAAT R  +L  
Sbjct: 312 IFIDEIDAVGRKRGSGMGGGHDEREQTL--NQLLVEMDGFDNDTNLIIIAATNRPDVLDP 369

Query: 169 PLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
            L    RF   + +   ++E  + I++  AK        +           T      +L
Sbjct: 370 ALLRPGRFDRQVGVAAPDLEGREAILRVHAKGKPFVPDVDLHMVAVRTPGFTGADLANVL 429

Query: 227 RRVRDFAEVAHAKTITREIADAALLRLA 254
                    A A+ I     D A+ R+ 
Sbjct: 430 NEAALLCARAGAQLIDNRAIDEAIDRVQ 457


>gi|326782164|ref|YP_004322565.1| clamp loader subunit [Prochlorococcus phage P-HM1]
 gi|310004371|gb|ADO98764.1| clamp loader subunit [Prochlorococcus phage P-HM1]
          Length = 313

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 52/258 (20%), Positives = 89/258 (34%), Gaps = 43/258 (16%)

Query: 14  QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
            E   +   RP+ +E      +     K F++A +     + ++L  G  G+GKTT+A+ 
Sbjct: 2   NEFLWVEKYRPKNIEHCILPDDLKKTFKSFVDAGE-----VPNLLLCGTAGIGKTTVAKA 56

Query: 74  VARELGVNFRSTSGP--------VIAKAGDLAAL--LTNLEDRDVLFIDEIHRLSIIVEE 123
           +  ELGV+    +G         V   A   A+   LT+     V+ IDE    +  V+ 
Sbjct: 57  LCHELGVDSIVINGSDEGRFLDTVRNSAKQFASTVSLTSSAKHKVIIIDEADNTTHDVQL 116

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR--LN 181
           +L  ++E+FQ                  S    I        +  PL  R  +       
Sbjct: 117 LLRASIEEFQ------------------SNCRFIFTCNFKNKIIQPLHSRTTVIDCNTRG 158

Query: 182 FYEIEDLKTIVQRGAKLT---GLAVTDEAACEIAMRSRGTPRIAGRLLRR-----VRDFA 233
             + +      +R   +     +  TD    E+  +     R     L+R     V D  
Sbjct: 159 KQKQQIATQFFERCRGILTAENIEFTDAVVAEVVQKFFPDFRRTLNELQRYAASGVIDTG 218

Query: 234 EVAHAKTITREIADAALL 251
            +A    +  E    AL 
Sbjct: 219 ILAQISQVRLEKLVGALK 236


>gi|291516359|emb|CBK69975.1| membrane protease FtsH catalytic subunit [Bifidobacterium longum
           subsp. longum F8]
          Length = 697

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 49/208 (23%), Positives = 77/208 (37%), Gaps = 12/208 (5%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108
           VL  GPPG GKT LA+ +A E GV F S +G       V   A  +  L    +     +
Sbjct: 253 VLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEMFVGLGASRVRDLFDEAKKNAPAI 312

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +FIDEI  +       +    ++ +  L   +         N +   +IAAT R  +L  
Sbjct: 313 IFIDEIDAVGRKRGSGMGGGHDEREQTL--NQLLVEMDGFDNDTNLIIIAATNRPDVLDP 370

Query: 169 PLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
            L    RF   + +   ++E  + I++  AK        +           T      +L
Sbjct: 371 ALLRPGRFDRQVGVAAPDLEGREAILRVHAKGKPFVPDVDLHMVAVRTPGFTGADLANVL 430

Query: 227 RRVRDFAEVAHAKTITREIADAALLRLA 254
                    A A+ I     D A+ R+ 
Sbjct: 431 NEAALLCARAGAQLIDNRAIDEAIDRVQ 458


>gi|239621579|ref|ZP_04664610.1| ATP-dependent metalloprotease FtsH [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|239515454|gb|EEQ55321.1| ATP-dependent metalloprotease FtsH [Bifidobacterium longum subsp.
           infantis CCUG 52486]
          Length = 697

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 49/208 (23%), Positives = 77/208 (37%), Gaps = 12/208 (5%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108
           VL  GPPG GKT LA+ +A E GV F S +G       V   A  +  L    +     +
Sbjct: 253 VLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEMFVGLGASRVRDLFDEAKKNAPAI 312

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +FIDEI  +       +    ++ +  L   +         N +   +IAAT R  +L  
Sbjct: 313 IFIDEIDAVGRKRGSGMGGGHDEREQTL--NQLLVEMDGFDNDTNLIIIAATNRPDVLDP 370

Query: 169 PLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
            L    RF   + +   ++E  + I++  AK        +           T      +L
Sbjct: 371 ALLRPGRFDRQVGVAAPDLEGREAILRVHAKGKPFVPDVDLHMVAVRTPGFTGADLANVL 430

Query: 227 RRVRDFAEVAHAKTITREIADAALLRLA 254
                    A A+ I     D A+ R+ 
Sbjct: 431 NEAALLCARAGAQLIDNRAIDEAIDRVQ 458


>gi|224125622|ref|XP_002329677.1| predicted protein [Populus trichocarpa]
 gi|222870585|gb|EEF07716.1| predicted protein [Populus trichocarpa]
          Length = 793

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/215 (20%), Positives = 76/215 (35%), Gaps = 37/215 (17%)

Query: 9   SRNVSQEDADISLLRPR---------TLEEFTGQVEACSNLKVFIEAAKARAE------- 52
           +  V  ++     +RP          T  +     E   +L+  +     R +       
Sbjct: 453 APEVPPDNEFEKRIRPEVIPANEIGVTFADIGALDETKESLQELVMLPLRRPDLFNGGLL 512

Query: 53  -ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLED 105
                +L  GPPG GKT LA+ +A+E G +F + S   I          ++ AL T    
Sbjct: 513 KPCRGILLFGPPGTGKTMLAKAIAKEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAK 572

Query: 106 --RDVLFIDEIH-----RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIA 158
               ++F+DE+      R  +   E +     +F              +     R  ++A
Sbjct: 573 VSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFM-------THWDGLLTKPGERILVLA 625

Query: 159 ATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           AT R   L   +  RF   I +    IE  + I++
Sbjct: 626 ATNRPFDLDEAIIRRFERRIMVGLPSIESRERILK 660


>gi|224010104|ref|XP_002294010.1| peroxisomal biogenesis factor 6, peroxisomal assembly factor w,
           Paf2, pex6-like protein [Thalassiosira pseudonana
           CCMP1335]
 gi|220970682|gb|EED89019.1| peroxisomal biogenesis factor 6, peroxisomal assembly factor w,
           Paf2, pex6-like protein [Thalassiosira pseudonana
           CCMP1335]
          Length = 303

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 55/218 (25%), Positives = 85/218 (38%), Gaps = 11/218 (5%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLED--RDVLFID 112
           +L  GPPG GKT +A+ VA E G+ F S  GP +     G+  A +  + +    VLF D
Sbjct: 41  ILLFGPPGTGKTLVAKAVAAECGLPFLSIKGPELLGSYVGESEANVRAVFEAAPSVLFFD 100

Query: 113 EIHRLSIIVEEILY-PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           E+  L+    E  +   + +  +  ++GE  +  S         +I AT R  LL   L 
Sbjct: 101 ELDSLAPRRGETGHGDGVMERVVATLLGELDNGGSDAAAAPHVIVIGATNRPDLLDPSLL 160

Query: 172 D--RFGIPIRLNFY-EIEDLKTIVQRGAKLTGLAV-TDEAACEIAMRSRGTPRIAGRLLR 227
              RF   + L      E    I+    +        D A           P ++G  L 
Sbjct: 161 RPGRFDRLLYLGPAKTKEHCLQILLAQTRKFKFEDGCDRADVIRQAMDSFPPTLSGADLS 220

Query: 228 RVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDL 265
            V   A V   K +   + + AL      + G D +D+
Sbjct: 221 AVASGALVRGLKRVCDRVENEALTMNK--EKGADTVDI 256


>gi|115762608|ref|XP_784872.2| PREDICTED: similar to GA19899-PA [Strongylocentrotus purpuratus]
 gi|115948961|ref|XP_001198560.1| PREDICTED: similar to GA19899-PA [Strongylocentrotus purpuratus]
          Length = 444

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/202 (23%), Positives = 76/202 (37%), Gaps = 19/202 (9%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNL-------EDRD 107
           +L  GPPG GK+ LAQ V++E+   F   S    + +  G+   ++  L       E R 
Sbjct: 237 ILLYGPPGTGKSRLAQAVSKEINSTFYCVSSADLISSWVGESEKIIKELFHHATQQEGRS 296

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLM-VGEGPSARSVKINLSRFTLIAATTRVGLL 166
           V+FIDE+  +               + +L+   EG        ++ +  L+ AT R   L
Sbjct: 297 VVFIDELDSICRSRSSSEEEHTRRVKTELLRQMEGADN---MASVEKIFLLCATNRPWEL 353

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQ----RGAKLTGLAVTDEAACEIAMRSRGTPR-- 220
            +    RF   I ++  + E  K I+       + +      D  A      S       
Sbjct: 354 DSAFLRRFQKRIYIHLPDREARKAILHLNTASSSAVFSAEDLDSFADNTEGFSGSDLSNL 413

Query: 221 IAGRLLRRVRDFAEVAHAKTIT 242
           I   L   VR+  +  H K  T
Sbjct: 414 ILSALYEPVREVQKATHWKETT 435


>gi|23466230|ref|NP_696833.1| ATP-dependent zinc metallopeptidase involved in cell division
           [Bifidobacterium longum NCC2705]
 gi|23326975|gb|AAN25469.1| ATP-dependent zinc metallopeptidase involved in cell division
           [Bifidobacterium longum NCC2705]
          Length = 696

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 49/208 (23%), Positives = 77/208 (37%), Gaps = 12/208 (5%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108
           VL  GPPG GKT LA+ +A E GV F S +G       V   A  +  L    +     +
Sbjct: 252 VLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEMFVGLGASRVRDLFDEAKKNAPAI 311

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +FIDEI  +       +    ++ +  L   +         N +   +IAAT R  +L  
Sbjct: 312 IFIDEIDAVGRKRGSGMGGGHDEREQTL--NQLLVEMDGFDNDTNLIIIAATNRPDVLDP 369

Query: 169 PLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
            L    RF   + +   ++E  + I++  AK        +           T      +L
Sbjct: 370 ALLRPGRFDRQVGVAAPDLEGREAILRVHAKGKPFVPDVDLHMVAVRTPGFTGADLANVL 429

Query: 227 RRVRDFAEVAHAKTITREIADAALLRLA 254
                    A A+ I     D A+ R+ 
Sbjct: 430 NEAALLCARAGAQLIDNRAIDEAIDRVQ 457


>gi|11467496|ref|NP_043642.1| ORF 644 [Odontella sinensis]
 gi|1706925|sp|P49825|FTSH_ODOSI RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|1185191|emb|CAA91674.1| ORF 644 [Odontella sinensis]
          Length = 644

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 64/302 (21%), Positives = 101/302 (33%), Gaps = 38/302 (12%)

Query: 27  LEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTS 86
            EE           K  I  AK        +L VGPPG GKT LA+ +A E  V F S +
Sbjct: 198 FEEIV--SFLKEPDKYTIVGAK----IPKGILLVGPPGTGKTLLAKAIANEADVPFFSVA 251

Query: 87  GPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDL-- 136
           G           A  +  L     +    ++FIDEI  +       +    ++ +  L  
Sbjct: 252 GSEFVEMFIGIGAARVRDLFKKASENAPCIVFIDEIDAVGRERGAGVGGGNDEREQTLNQ 311

Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQR 194
           ++ E    +  K       ++ AT R  +L   L    RF   + +N  +      I++ 
Sbjct: 312 LLTEMDGFKENKG----VIVVGATNRADILDAALLRPGRFDRQVTVNLPDRLGRVGILKV 367

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
            A+   L                +      LL      A      +IT+   + A  R+ 
Sbjct: 368 HARNKPLGEDVSLVQLANRTPGFSGADLANLLNEAAILATRYKKSSITKNEVNEAADRII 427

Query: 255 IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP 314
               G    D +   +IA +  G       I+  + +  D +E            I  TP
Sbjct: 428 GGIAGAPMEDTKNKRLIAYHEVGH-----AITGSVLKSHDEVEK-----------ITLTP 471

Query: 315 RG 316
           RG
Sbjct: 472 RG 473


>gi|23336233|ref|ZP_00121458.1| COG0465: ATP-dependent Zn proteases [Bifidobacterium longum DJO10A]
 gi|189440710|ref|YP_001955791.1| ATP-dependent Zn protease [Bifidobacterium longum DJO10A]
 gi|189429145|gb|ACD99293.1| ATP-dependent Zn protease [Bifidobacterium longum DJO10A]
          Length = 697

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 49/208 (23%), Positives = 77/208 (37%), Gaps = 12/208 (5%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108
           VL  GPPG GKT LA+ +A E GV F S +G       V   A  +  L    +     +
Sbjct: 253 VLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEMFVGLGASRVRDLFDEAKKNAPAI 312

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +FIDEI  +       +    ++ +  L   +         N +   +IAAT R  +L  
Sbjct: 313 IFIDEIDAVGRKRGSGMGGGHDEREQTL--NQLLVEMDGFDNDTNLIIIAATNRPDVLDP 370

Query: 169 PLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
            L    RF   + +   ++E  + I++  AK        +           T      +L
Sbjct: 371 ALLRPGRFDRQVGVAAPDLEGREAILRVHAKGKPFVPDVDLHMVAVRTPGFTGADLANVL 430

Query: 227 RRVRDFAEVAHAKTITREIADAALLRLA 254
                    A A+ I     D A+ R+ 
Sbjct: 431 NEAALLCARAGAQLIDNRAIDEAIDRVQ 458


>gi|296423208|ref|XP_002841147.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295637381|emb|CAZ85338.1| unnamed protein product [Tuber melanosporum]
          Length = 818

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 77/224 (34%), Gaps = 18/224 (8%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLED 105
           +    +L  GPPG GKT +A+ VA E G  F   +GP I          +L       E 
Sbjct: 250 KPPRGILLYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEK 309

Query: 106 RD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
               ++FIDEI  ++   E+             +V +  +        S   ++AAT R 
Sbjct: 310 NSPAIIFIDEIDSIAPKREK-----TNGEVERRVVSQLLTLMDGMKARSNIVVMAATNRP 364

Query: 164 GLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAG 223
             +   L+ RFG   R     I D    ++    +  +   +    E     +      G
Sbjct: 365 NSIDPALR-RFGRFDREVDIGIPDPTGRLE----ILQIHTKNMKLAEGVDLEQIAAETHG 419

Query: 224 RLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRY 267
            +   V      A  + I  ++    L    ID    D L +  
Sbjct: 420 YVGSDVASLCSEAAMQQIREKMDLIDLDEDTIDAEVLDSLGVTM 463



 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 44/211 (20%), Positives = 69/211 (32%), Gaps = 25/211 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALD-----------HVLFVGPPGLGKTTLAQVV 74
             ++  G  E     +  IE+ +   E  +            VLF GPPG GKT LA+ V
Sbjct: 490 RWDDIGGLEEVK---RELIESVQYPVEHPEKFLKFGMSPSRGVLFYGPPGTGKTLLAKAV 546

Query: 75  ARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILY 126
           A E   NF S  GP +          ++  +          V+F+DE+  ++      + 
Sbjct: 547 ANECAANFISVKGPELLSMWFGESESNIRDIFDKARAAAPCVVFLDELDSIAKSRGGSMG 606

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPL-QDRFGIPIRLNFYEI 185
            A      D +V    +            +I AT R   L   L +      +       
Sbjct: 607 DA--GGASDRVVNMLLTELDGMGVKKNVFVIGATNRPEQLDAALCRPGRLDTLVYVPLPN 664

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSR 216
           E  +  + R          D     IA R+ 
Sbjct: 665 EASRADILRAQLRNTPCAPDIDLKYIASRTH 695


>gi|281209635|gb|EFA83803.1| replication factor C subunit [Polysphondylium pallidum PN500]
          Length = 347

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/233 (16%), Positives = 69/233 (29%), Gaps = 38/233 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP+ L       +    +   I        +L H+LF GPPG GKT+  Q +AR
Sbjct: 21  PWVEKYRPKDLSGLIAHEDITDTVSKLI-----AKNSLPHLLFYGPPGTGKTSTIQAIAR 75

Query: 77  -----ELGVNFRSTSGPVIAKAGDLAALLTNLE---------DRDVLFIDEIHRLSIIVE 122
                         +         +   +                ++ +DE   ++   +
Sbjct: 76  KLYGESYSRMVLELNASDDRGIDVVREQIKTFASSMFMFSNYPYKLIILDEADSMTNPAQ 135

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
             L   +E +                   +RF        V  +   LQ R     R + 
Sbjct: 136 TALRRVIEKYTRT----------------TRF--CMICNYVSKILPALQSRC-TRFRFSP 176

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
                +   ++   +   L V D+A   I   S G  R    +L+      +V
Sbjct: 177 LPRSAITKRMKEIIECESLKVNDDALNSIITLSEGDMRKCLNILQSASMSIDV 229


>gi|213691454|ref|YP_002322040.1| ATP-dependent metalloprotease FtsH [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213522915|gb|ACJ51662.1| ATP-dependent metalloprotease FtsH [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320457526|dbj|BAJ68147.1| zinc metallopeptidase [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 697

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 49/208 (23%), Positives = 77/208 (37%), Gaps = 12/208 (5%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108
           VL  GPPG GKT LA+ +A E GV F S +G       V   A  +  L    +     +
Sbjct: 253 VLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEMFVGLGASRVRDLFDEAKKNAPAI 312

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +FIDEI  +       +    ++ +  L   +         N +   +IAAT R  +L  
Sbjct: 313 IFIDEIDAVGRKRGSGMGGGHDEREQTL--NQLLVEMDGFDNDTNLIIIAATNRPDVLDP 370

Query: 169 PLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
            L    RF   + +   ++E  + I++  AK        +           T      +L
Sbjct: 371 ALLRPGRFDRQVGVAAPDLEGREAILRVHAKGKPFVPDVDLHMVAVRTPGFTGADLANVL 430

Query: 227 RRVRDFAEVAHAKTITREIADAALLRLA 254
                    A A+ I     D A+ R+ 
Sbjct: 431 NEAALLCARAGAQLIDNRAIDEAIDRVQ 458


>gi|194385100|dbj|BAG60956.1| unnamed protein product [Homo sapiens]
          Length = 589

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 51/242 (21%), Positives = 76/242 (31%), Gaps = 27/242 (11%)

Query: 26  TLEEFTGQV-EACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVAR 76
             E+  G         K+ I       E   H        VL  GPPG GKT LA  +A 
Sbjct: 157 KFEDVGGNDMTLKEVCKMLIHM--RHPEVYHHLGVVPPRGVLLHGPPGCGKTLLAHAIAG 214

Query: 77  ELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPA 128
           EL +     + P I           L  L          ++FIDEI  ++   E      
Sbjct: 215 ELDLPILKVAAPEIVSGVSGESEQKLRELFEQAVSNAPCIIFIDEIDAITPKREVASKDM 274

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
                  L+              +R  +I AT R   L   L+   RF   I L   +  
Sbjct: 275 ERRIVAQLLTCMDDLNNVAAT--ARVLVIGATNRPDSLDPALRRAGRFDREICLGIPDEA 332

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I+Q   +   L      A +    +  TP   G  L  +   A +     +  ++ 
Sbjct: 333 SRERILQTLCRKLRLPQ----AFDFCHLAHLTPGFVGADLMALCREAAMCAVNRVLMKLQ 388

Query: 247 DA 248
           + 
Sbjct: 389 EQ 390



 Score = 43.9 bits (102), Expect = 0.035,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 8/76 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL  GPPG GKT LA+ VA E G+NF S  GP +     G+    +  +  R       V
Sbjct: 512 VLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCV 571

Query: 109 LFIDEIHRLSIIVEEI 124
           +F DE+  L     + 
Sbjct: 572 IFFDEVDALCPRRSDR 587


>gi|145334803|ref|NP_001078747.1| ATP binding / nucleoside-triphosphatase/ nucleotide binding
           [Arabidopsis thaliana]
 gi|332008889|gb|AED96272.1| putative ATP binding protein [Arabidopsis thaliana]
          Length = 829

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 52/281 (18%), Positives = 95/281 (33%), Gaps = 42/281 (14%)

Query: 9   SRNVSQEDADISLLRPR---------TLEEFTGQVEACSNLKVFIEAAKARAE------- 52
           +  V  ++     +RP          T  +     E   +L+  +     R +       
Sbjct: 489 APEVVPDNEFEKRIRPEVIPANEIGVTFADIGSLDETKDSLQELVMLPLRRPDLFQGGLL 548

Query: 53  -ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLED 105
                +L  GPPG GKT LA+ +A E G +F + S   I          ++ AL T    
Sbjct: 549 KPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAK 608

Query: 106 --RDVLFIDEIH-----RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIA 158
               ++F+DE+      R  +   E +     +F              +     R  ++A
Sbjct: 609 VSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFM-------THWDGLMTKPGERILVLA 661

Query: 159 ATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGT 218
           AT R   L   +  RF   I +    IE  + I++    L     T+    +     + T
Sbjct: 662 ATNRPFDLDEAIIRRFERRIMVGLPSIESREKILR---TLLSKEKTEN--LDFHELGQIT 716

Query: 219 PRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259
              +G  L+ +   A     + + ++       R   ++ G
Sbjct: 717 EGYSGSDLKNLCITAAYRPVRELIQQERLKDQERKKREEAG 757


>gi|91205612|ref|YP_537967.1| ATP-dependent protease La [Rickettsia bellii RML369-C]
 gi|122425555|sp|Q1RID6|LON_RICBR RecName: Full=Lon protease; AltName: Full=ATP-dependent protease La
 gi|91069156|gb|ABE04878.1| ATP-dependent protease La [Rickettsia bellii RML369-C]
          Length = 775

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 48/248 (19%), Positives = 86/248 (34%), Gaps = 40/248 (16%)

Query: 34  VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA 93
                 L V   ++K R   L     +GPPG+GKT+L + +A  +G  +   +   +   
Sbjct: 332 ERIIEYLAVLQRSSKIRGPIL---CLIGPPGVGKTSLIKSIAEGMGRKYTKFALGGVRDE 388

Query: 94  GDLA------------ALLTNLED----RDVLFIDEIHRL--------SIIVEEILYPAM 129
            ++              +LT L+       V+ +DEI ++        +  + E+L P  
Sbjct: 389 AEIRGHRKTYLGSMPGKILTQLKKVKTSNPVMLLDEIDKMGSDFRGDPASALLEVLDPEQ 448

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
               +D  +        V+ +LS    I AT     L   L DR  I     + E E ++
Sbjct: 449 NSHFVDHYLE-------VEYDLSNVIFI-ATANSYNLPRALIDRMEIIDISGYMEEEKIQ 500

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
                 AK   +    +           +      L+R     + V   +     +   A
Sbjct: 501 -----IAKNYLVPKQLKMHKIKKDEITISDDAILDLIRYYTKESGVRSLEREIGALTRKA 555

Query: 250 LLRLAIDK 257
           L ++  DK
Sbjct: 556 LKQILADK 563


>gi|71419636|ref|XP_811227.1| peroxisome assembly protein [Trypanosoma cruzi strain CL Brener]
 gi|70875867|gb|EAN89376.1| peroxisome assembly protein, putative [Trypanosoma cruzi]
          Length = 955

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 15/117 (12%)

Query: 20  SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH-------VLFVGPPGLGKTTLAQ 72
           + L+P   ++  G  EA   L+  I+      E           +LF GPPG GKT LA+
Sbjct: 654 TKLQPVRWKDVGGLEEAKRELRETIQLPLLHPELFSTGTKRRAGILFYGPPGCGKTLLAK 713

Query: 73  VVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIV 121
            VA E+ +NF +  GP +          ++  L     D    ++F DE+  L+   
Sbjct: 714 AVATEMNMNFMAVKGPELINQYVGESEKNIRLLFQRARDNSPCIIFFDELDALAPAR 770


>gi|302797513|ref|XP_002980517.1| hypothetical protein SELMODRAFT_420117 [Selaginella moellendorffii]
 gi|300151523|gb|EFJ18168.1| hypothetical protein SELMODRAFT_420117 [Selaginella moellendorffii]
          Length = 1291

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 52/242 (21%), Positives = 83/242 (34%), Gaps = 25/242 (10%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
            +  Q  +     RP+T  +  GQ     +L      A  R   +   LF GP G GK++
Sbjct: 493 SDFRQNKSLSYKYRPKTFRDMVGQNVVMQSL----ANAVLRGRIVSLYLFQGPRGTGKSS 548

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLT-NLEDR-DVLFID-----EIHRLSIIVE 122
            A+V A  L       S   +   G     +  NL    DV   D      +  +  ++E
Sbjct: 549 AARVFAAALNC----LSSEELRPCGLCRECVALNLGKSLDVREFDASRFNGLGSVKELLE 604

Query: 123 EILYPAMEDFQLDLMVGE--GPSARSVKINLS-------RFTLIAATTRVGLLTNPLQDR 173
             + P         +V E    +A S    L           +I  T+    L   L  R
Sbjct: 605 VAILPPSSGRYRLSVVDEVHTLTAESWNFFLKGMEELPGNSIVILITSNPEQLPRTLGSR 664

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                     + + +   +Q+ A    + +  EA   IA RS G+ R A   L ++    
Sbjct: 665 CQKYPFTKLKDPDIISR-LQKLATKENIDIEIEALELIASRSNGSLRDAEMTLDQLGLLG 723

Query: 234 EV 235
           +V
Sbjct: 724 QV 725


>gi|289616165|emb|CBI56961.1| putative ATP-dependent peptidase [Sordaria macrospora]
          Length = 846

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 87/244 (35%), Gaps = 22/244 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G  EA   L+  I+  +          +    VL VGPPG GKT LA+ VA E 
Sbjct: 361 RFADVHGCDEAKEELQELIDFLRNPEKYSTLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 420

Query: 79  GVNFRSTSGPVIA------KAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAME 130
           GV F + SG           A  +  L    + +   ++FIDE+  +             
Sbjct: 421 GVPFFNMSGSEFEEVYVGVGAKRVRDLFAAAKAKAPSIVFIDELDAIGGRRNSR-DATYV 479

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
              L+ ++ E           S   +I AT     L   L    RF   + ++  ++   
Sbjct: 480 RQTLNQLLTELDGFEQN----SGVIIIGATNFPESLDKALTRPGRFDRNVVVSLPDVRGR 535

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             I++  AK    A         +  S  +      ++ +    A    A+++T++  + 
Sbjct: 536 MAILKHHAKRIKAAADVNLEAIASRTSGLSGAELENIVNQAAIHASKLKAQSVTQKDFEW 595

Query: 249 ALLR 252
           A  +
Sbjct: 596 AKDK 599


>gi|222423365|dbj|BAH19655.1| AT5G52882 [Arabidopsis thaliana]
          Length = 829

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 52/281 (18%), Positives = 95/281 (33%), Gaps = 42/281 (14%)

Query: 9   SRNVSQEDADISLLRPR---------TLEEFTGQVEACSNLKVFIEAAKARAE------- 52
           +  V  ++     +RP          T  +     E   +L+  +     R +       
Sbjct: 489 APEVVPDNEFEKRIRPEVIPANEIGVTFADIGSLDETKDSLQELVMLPLRRPDLFQGGLL 548

Query: 53  -ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLED 105
                +L  GPPG GKT LA+ +A E G +F + S   I          ++ AL T    
Sbjct: 549 KPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAK 608

Query: 106 --RDVLFIDEIH-----RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIA 158
               ++F+DE+      R  +   E +     +F              +     R  ++A
Sbjct: 609 VSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFM-------THWDGLMTKPGERILVLA 661

Query: 159 ATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGT 218
           AT R   L   +  RF   I +    IE  + I++    L     T+    +     + T
Sbjct: 662 ATNRPFDLDEAIIRRFERRIMVGLPSIESREKILR---TLLSKEKTEN--LDFHELGQIT 716

Query: 219 PRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259
              +G  L+ +   A     + + ++       R   ++ G
Sbjct: 717 EGYSGSDLKNLCITAAYRPVRELIQQERLKDQERKKREEAG 757


>gi|171690880|ref|XP_001910365.1| hypothetical protein [Podospora anserina S mat+]
 gi|170945388|emb|CAP71500.1| unnamed protein product [Podospora anserina S mat+]
          Length = 409

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 69/189 (36%), Gaps = 19/189 (10%)

Query: 24  PRTLEEFTGQVEACSNLKVFI----------EAAKARAEALDHVLFVGPPGLGKTTLAQV 73
           P   ++  G  E    +K  I          +   +   A   VL  GPPG GKT LA+ 
Sbjct: 110 PVGFDDIGGLEEIIEEVKEAIIYPLTMPHLYQHGGSLLAAPSGVLLYGPPGCGKTMLAKA 169

Query: 74  VARELGVNFRSTSGPVIAKA------GDLAALLTNLEDRD--VLFIDEIHRLSIIVEEIL 125
           VA E G +F +     + +         + A+ +     +  ++FIDEI  +        
Sbjct: 170 VAHESGASFINLHISTLTEKWYGDSNKLVRAVFSLARKLEPAIIFIDEIDAVLGQRHNGE 229

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLS-RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           + A    + + M        S    +  R  ++ AT R+  +   +  R      ++   
Sbjct: 230 HEASGMVKAEFMTLWDGLTSSNAAGVPARIVVLGATNRINAIDEAILRRMPKKFPVSLPG 289

Query: 185 IEDLKTIVQ 193
            E  + I++
Sbjct: 290 TEQRRRILE 298


>gi|328880305|emb|CCA53544.1| Cell division protein FtsH [Streptomyces venezuelae ATCC 10712]
          Length = 453

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 46/204 (22%), Positives = 69/204 (33%), Gaps = 11/204 (5%)

Query: 45  EAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE 104
            A +        V   GPPG GKTT A+ +A  LG  F       +A  G+LAA L +  
Sbjct: 210 RAGRHGVRPPRAVCLFGPPGTGKTTFARGIASRLGWPFVEILPSRLADEGNLAAALRSAF 269

Query: 105 ------DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIA 158
                 DR ++FIDE+  ++ +  E   P       + ++   P  R     L      +
Sbjct: 270 ARIAELDRVLVFIDEVEEIAPVRSEPAQPGGMHGVTNELLKLIPGFRERDERLLVCATNS 329

Query: 159 ATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGT 218
             +       P   RF   I +   +      I  R          DE      + +   
Sbjct: 330 IRSLDPAFLRP--GRFDYLIPIGTPDKAARAAIWSRYTDGRADVDIDELVLASDLFTPAD 387

Query: 219 PRIAGRLLRRV---RDFAEVAHAK 239
              A R+  +    RD   VA   
Sbjct: 388 IEHAARIAAQASFERDLLAVAGRG 411


>gi|320100546|ref|YP_004176138.1| ATPase [Desulfurococcus mucosus DSM 2162]
 gi|319752898|gb|ADV64656.1| ATPase associated with various cellular activities AAA_3
           [Desulfurococcus mucosus DSM 2162]
          Length = 311

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 53/236 (22%), Positives = 87/236 (36%), Gaps = 25/236 (10%)

Query: 39  NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAA 98
            L+V + A  A+     HV+  G PG+ KT  A+ VAR L + F+           D+  
Sbjct: 23  ELRVIVAAMLAKG----HVIMEGVPGVAKTYTAKAVARLLDLEFKRVQMTPDLLPSDIVG 78

Query: 99  LLTNLEDRD-------------VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSAR 145
             +  + +              +L  DEI+R S   +  L  AM++ Q+ +   EG + R
Sbjct: 79  -YSIFDPKTGGFTVRRGPIFTNILLADEINRASPRTQSALLEAMQERQVTI---EGETHR 134

Query: 146 SVKINLSRFTLIAATTR-VGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVT 204
             +  +   T+       V  L     DRF + +   +   E L  I++R  ++      
Sbjct: 135 LPEPFMVIATMNPVEMEGVFPLPEAQLDRFLVRVEAGYTSHEGLVKILKRAEEI---ERA 191

Query: 205 DEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGF 260
            E    +A RS     I+     RV D      A  I       A+      + G 
Sbjct: 192 IEGLKPVASRSELLEEISRAAEVRVDDSIYDYAASIIEETRRHPAVRLGGSPRAGI 247


>gi|237756504|ref|ZP_04585035.1| cell division protease FtsH [Sulfurihydrogenibium yellowstonense
           SS-5]
 gi|237691333|gb|EEP60410.1| cell division protease FtsH [Sulfurihydrogenibium yellowstonense
           SS-5]
          Length = 632

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 63/295 (21%), Positives = 110/295 (37%), Gaps = 28/295 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAK-------ARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
            L++  G  E    +K  IE  K           A   +L  G PG+GKT LA+ +A E 
Sbjct: 151 KLDDVAGMDEVKEEVKELIEYLKDPSRYQKLGGRAPKGILLYGDPGVGKTLLAKAIAGEA 210

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEI-LYPAM 129
            V F S SG       V   A  +  L    +     ++FIDEI  +      +      
Sbjct: 211 NVPFISISGSDFVEMFVGVGAARVRDLFETAKKHAPCLIFIDEIDAVGRARTGVGFGGGH 270

Query: 130 EDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           ++ +  L  ++ E     S +       +IAAT R  +L   L    RF   I +   ++
Sbjct: 271 DEREQTLNQLLVELDGFDSNEG----IIVIAATNRPDILDPALLRPGRFDRQISVPKPDV 326

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
                I++   K   + + ++   ++   ++GTP  +G  L  + + A +  A+    ++
Sbjct: 327 RGRYEILKVHVKKKNIPLDED--VDLMTIAKGTPGFSGADLANLINEAALLAARRNKEKV 384

Query: 246 ADAAL-LRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
               L   L    MG ++  +              VG   I   + E  D +  +
Sbjct: 385 GMQELEDALDRIMMGLERKGMAITEKEKEKIAYHEVG-HAIVGVMLEEADPLHKV 438


>gi|255076839|ref|XP_002502086.1| predicted protein [Micromonas sp. RCC299]
 gi|226517351|gb|ACO63344.1| predicted protein [Micromonas sp. RCC299]
          Length = 543

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/111 (34%), Positives = 49/111 (44%), Gaps = 17/111 (15%)

Query: 24  PR-TLEEFTGQVEACSNLKVFIE--------AAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           P+ + ++  G  E    LK  +E         A+  A+    VL  GPPG  KT LA+ V
Sbjct: 289 PKVSWDDVGGNHEVKQLLKEAVEWTEKYPEAMARLGAKPPKGVLLYGPPGCSKTMLARAV 348

Query: 75  ARELGVNFRSTSGPVI--AKAGDLAALLTNLEDR------DVLFIDEIHRL 117
           A E G NF S  GP +     GD    +  L  R       V+FIDEI  L
Sbjct: 349 ASESGRNFLSVKGPELYSKWVGDSEKAVRTLFRRAKTSAPSVIFIDEIDGL 399



 Score = 37.7 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 64/181 (35%), Gaps = 22/181 (12%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLED---R 106
           +    VL  GPPG GK+ LA+  A   G N     GP +     G+  A L  +     R
Sbjct: 39  KPPRGVLLWGPPGTGKSRLARAAADAAGANLLVVRGPELIGPVVGESEAALRGVFKEAVR 98

Query: 107 D---VLFIDEIHRLSIIVEEILY------------PAMEDFQLDLMVGEGPSARSVKINL 151
               V+ IDEI  ++   +                 AM +  +  ++       +  ++L
Sbjct: 99  TRPCVVMIDEIDSIAPARQGGDGVTGGGGKGGGDEDAMSNRVVTTLLSIMDGVSAENLDL 158

Query: 152 SRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAAC 209
            R  ++A T R   +   L+   RF   I +        + I     +     +TD    
Sbjct: 159 HRVVVVATTNRPEAIDRALRRPGRFDKEIEVGVPTPASRREIFAIKLRDVAHELTDADVD 218

Query: 210 E 210
           E
Sbjct: 219 E 219


>gi|115449001|ref|NP_001048280.1| Os02g0775200 [Oryza sativa Japonica Group]
 gi|46805779|dbj|BAD17147.1| putative replication factor C 36kDa subunit [Oryza sativa Japonica
           Group]
 gi|46806135|dbj|BAD17365.1| putative replication factor C 36kDa subunit [Oryza sativa Japonica
           Group]
 gi|113537811|dbj|BAF10194.1| Os02g0775200 [Oryza sativa Japonica Group]
 gi|215697717|dbj|BAG91711.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|218191668|gb|EEC74095.1| hypothetical protein OsI_09136 [Oryza sativa Indica Group]
          Length = 361

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/239 (18%), Positives = 72/239 (30%), Gaps = 44/239 (18%)

Query: 7   LLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLG 66
           L S    +    +   RP++L +     +    +             L H+L  GPPG G
Sbjct: 29  LSSTPGGRAAPWVEKYRPQSLGDVAAHRDIVDTIDRL-----TNENRLPHLLLYGPPGTG 83

Query: 67  KTTLAQVVAR-----ELGVNFRSTSGPVIAKAGDLAALLTN-LEDRDVLF---------- 110
           KT+    VAR     + G      +         +   + +    R + F          
Sbjct: 84  KTSTILAVARKLYGSQYGNMILELNASDERGIDVVRQQIQDFASARSLSFGAKQSVKMVL 143

Query: 111 IDEIHRLSIIVEEILYPAMEDFQLD--LMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +DE   ++   +  L   +E         +      + +    SR T             
Sbjct: 144 LDEADAMTKDAQFALRRVIEKHTRSTRFALICNHVNKIIPALQSRCT------------- 190

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
               RF        +  E LK I+Q      GL V D     +   S G  R A  +L+
Sbjct: 191 ----RFRFAPLDGTHVRERLKHIIQ----SEGLDVDDGGLTALVRLSNGDMRKALNILQ 241


>gi|322709309|gb|EFZ00885.1| cell division control protein Cdc48 [Metarhizium anisopliae ARSEF
           23]
          Length = 818

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 76/229 (33%), Gaps = 28/229 (12%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLED 105
           +    VL  GPPG GKT +A+ VA E G  F   +GP I          +L       E 
Sbjct: 251 KPPRGVLLYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEK 310

Query: 106 RD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
               ++FIDEI  ++   E+             +V +  +        S   ++AAT R 
Sbjct: 311 NSPAIIFIDEIDSIAPKREK-----TNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRP 365

Query: 164 GLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVT---DEAACEIAMRSRGT 218
             +   L+   RF   + +   +      I+Q   K   L      ++ A E        
Sbjct: 366 NSIDPALRRFGRFDREVDIGVPDPTGRLEILQIHTKNMKLGDDVDLEQIAAETHGYVGSD 425

Query: 219 PRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRY 267
                     V      A  + I  ++    L    ID    D L +  
Sbjct: 426 ----------VAALCSEAAMQQIREKMDLIDLDEDTIDAEVLDSLGVTM 464



 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 81/217 (37%), Gaps = 14/217 (6%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--V 108
           VLF GPPG GKT LA+ VA E   NF S  GP +          ++  +          +
Sbjct: 530 VLFYGPPGTGKTMLAKAVANECAANFISVKGPELLSMWFGESESNIRDIFDKARAAAPCI 589

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +F+DE+  ++      +  A      D +V +  +      +     +I AT R   L  
Sbjct: 590 VFLDELDSIAKARGGSVGDA--GGASDRVVNQLLTEMDGMTSKKNVFVIGATNRPEQLDP 647

Query: 169 PLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
            L    R    I +   +     +I++   + T +A   +     +  +  +    G + 
Sbjct: 648 ALCRPGRLDSLIYVPLPDEPGRLSILKAQLRKTPMASDIDLGYIASKTNGFSGADLGFIT 707

Query: 227 RRVRDFA--EVAHAKTITREIADAALLRLAIDKMGFD 261
           +R    A  E   A     +  +AA   + +D+   D
Sbjct: 708 QRAVKIAIKEAISADIERTKAREAAGDEMDMDEDSED 744


>gi|317177452|dbj|BAJ55241.1| DNA polymerase III subunits gamma and tau [Helicobacter pylori F16]
          Length = 578

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/256 (17%), Positives = 79/256 (30%), Gaps = 59/256 (23%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA------- 75
           RP+   E  GQ      L + ++  +         LF G  G GKT+ +++ A       
Sbjct: 9   RPKHFSELVGQESVAKTLSLALDNQRLANAY----LFSGLRGSGKTSSSRIFARALMCEE 64

Query: 76  -----------------RELGVNFRSTSGPVIAKAGDLAALLTNLEDRD------VLFID 112
                                ++     G       D+  L+     R       +  ID
Sbjct: 65  GPKSVPCDTCPQCQSALNNHHIDIIEMDGASNRGIDDVRNLIEQTRYRPSFGRYKIFIID 124

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H  +      L   +E+                    S    + ATT    L   +  
Sbjct: 125 EVHMFTTEAFNALLKTLEE------------------PPSHVKFLLATTDALKLPATILS 166

Query: 173 R---FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           R   F          I  LKTI++       ++    A  ++A   +G+ R    LL + 
Sbjct: 167 RTQHFRFKKIPENSVISHLKTILE----KEQVSYETSALEKLAHSGQGSLRDTITLLEQA 222

Query: 230 RDFAEVAHAKTITREI 245
            ++ + A  ++   E+
Sbjct: 223 INYCDNAITESKVAEM 238


>gi|291296624|ref|YP_003508022.1| ATP-dependent protease La [Meiothermus ruber DSM 1279]
 gi|290471583|gb|ADD29002.1| ATP-dependent protease La [Meiothermus ruber DSM 1279]
          Length = 815

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/214 (21%), Positives = 77/214 (35%), Gaps = 39/214 (18%)

Query: 55  DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL----------- 103
             +LFVGPPG+GKT++A+ +A+ LG  +   S        D+                  
Sbjct: 365 PILLFVGPPGVGKTSIAKSIAKSLGRKYHRISLGGARDESDIRGHRRTYIGAMPGRIIQG 424

Query: 104 -----EDRDVLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKIN 150
                    V+ +DE+ +L +  +        E+L PA      D  +G       V  +
Sbjct: 425 MRQAGSKNPVILLDEVDKLGVSYQGDPAAALLELLDPAQNKEFTDHYLG-------VPFD 477

Query: 151 LSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACE 210
           +S    I        +  PL DR  +    ++ E E L  I +R   L    + +    E
Sbjct: 478 MSEVLFICTANFPENIPGPLFDRMELIEFTSYIEQEKL-EIAKRY--LLPRQMVENGLKE 534

Query: 211 IAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
             +           L+R +  +   A  + + RE
Sbjct: 535 NQVHITE-----AALMRLITHYTREAGVRNLERE 563


>gi|317482115|ref|ZP_07941139.1| ATP-dependent metallopeptidase HflB [Bifidobacterium sp.
           12_1_47BFAA]
 gi|316916474|gb|EFV37872.1| ATP-dependent metallopeptidase HflB [Bifidobacterium sp.
           12_1_47BFAA]
          Length = 697

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 49/208 (23%), Positives = 77/208 (37%), Gaps = 12/208 (5%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108
           VL  GPPG GKT LA+ +A E GV F S +G       V   A  +  L    +     +
Sbjct: 253 VLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEMFVGLGASRVRDLFDEAKKNAPAI 312

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +FIDEI  +       +    ++ +  L   +         N +   +IAAT R  +L  
Sbjct: 313 IFIDEIDAVGRKRGSGMGGGHDEREQTL--NQLLVEMDGFDNDTNLIIIAATNRPDVLDP 370

Query: 169 PLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
            L    RF   + +   ++E  + I++  AK        +           T      +L
Sbjct: 371 ALLRPGRFDRQVGVAAPDLEGREAILRVHAKGKPFVPDVDLHMVAVRTPGFTGADLANVL 430

Query: 227 RRVRDFAEVAHAKTITREIADAALLRLA 254
                    A A+ I     D A+ R+ 
Sbjct: 431 NEAALLCARAGAQLIDNRAIDEAIDRVQ 458


>gi|326781895|ref|YP_004322297.1| clamp loader subunit [Synechococcus phage S-SM2]
 gi|310003085|gb|ADO97483.1| clamp loader subunit [Synechococcus phage S-SM2]
          Length = 316

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 52/281 (18%), Positives = 95/281 (33%), Gaps = 39/281 (13%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFV 60
           M+ R+  L          +   RP+T+EE           + F+         + ++L  
Sbjct: 1   MIMRDDFL---------WVEKYRPKTIEECILPTNIKKTFQDFL-----HKGEIPNMLLA 46

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGP--------VIAKAGDLAAL--LTNLEDRDVLF 110
           GP G GKTT+A+ +  ELGV+    +G         V   A + A+   L       V+ 
Sbjct: 47  GPAGCGKTTVAKALCNELGVDVYVINGSDEGRFLDTVRNTAKNFASTVSLQATGKHKVII 106

Query: 111 IDEIHRLSIIVEEILYPAMED--FQLDLMVGEGPSARSVKINLSRFTLIAATTRV---GL 165
           IDE    +  V+ +L    E+       +       + ++   SR   I  +T       
Sbjct: 107 IDEADNTTNDVQLLLRAFTEEFSGNCRFIFTCNFKNKIIEPLHSRCACIDFSTNSKSKPQ 166

Query: 166 LTNPLQDRFGIPIRLN--FYEIEDLKTIVQ------RGAKLTGLAVTDEAACEIAMRSRG 217
           L      R    +      Y+ + L  ++       R         +     +  + +  
Sbjct: 167 LAALFFKRLQEILGTEGVEYDNKVLVELINKHFPDWRRVLNECQRYSSSGKIDTGILATF 226

Query: 218 TPRIAGRLLRRV--RDFAEVAHAKTITREIADAALLRLAID 256
           +      L++++  +DF EV        +     LLR   D
Sbjct: 227 SDVKVNDLVKKLKEKDFPEVRKWIVNNLDNDTNLLLRRIYD 267


>gi|291526623|emb|CBK92209.1| ATP-dependent metalloprotease FtsH [Eubacterium rectale M104/1]
          Length = 604

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/197 (23%), Positives = 76/197 (38%), Gaps = 22/197 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78
              +  G+ EA  NL   ++      +  D        VL VGPPG GKT LA+ VA E 
Sbjct: 163 RFSDVAGEDEAKENLSEIVDYLHNPKKYTDVGASMPKGVLLVGPPGTGKTMLAKAVAGES 222

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG           A  +  L    +++   ++FIDEI  +    +  +    E
Sbjct: 223 NVPFFSMSGSEFVEMFVGMGASKVRDLFRQAKEKAPCIVFIDEIDAIGKKRDGQMGGNDE 282

Query: 131 -DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            +  L+ ++ E               ++AAT R   L   L    RF   + +   ++  
Sbjct: 283 REQTLNQLLTEMDGFEGNNG----VIILAATNRPESLDPALTRPGRFDRRVPVELPDLAG 338

Query: 188 LKTIVQRGAKLTGLAVT 204
            + I++  AK    +  
Sbjct: 339 REAILKVHAKKIKASDD 355


>gi|238922414|ref|YP_002935928.1| microtubule-severing ATPase [Eubacterium eligens ATCC 27750]
 gi|238874086|gb|ACR73794.1| microtubule-severing ATPase [Eubacterium eligens ATCC 27750]
          Length = 604

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/197 (23%), Positives = 76/197 (38%), Gaps = 22/197 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78
              +  G+ EA  NL   ++      +  D        VL VGPPG GKT LA+ VA E 
Sbjct: 163 RFSDVAGEDEAKENLSEIVDYLHNPKKYTDVGASMPKGVLLVGPPGTGKTMLAKAVAGES 222

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG           A  +  L    +++   ++FIDEI  +    +  +    E
Sbjct: 223 NVPFFSMSGSEFVEMFVGMGASKVRDLFRQAKEKAPCIVFIDEIDAIGKKRDGQMGGNDE 282

Query: 131 -DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            +  L+ ++ E               ++AAT R   L   L    RF   + +   ++  
Sbjct: 283 REQTLNQLLTEMDGFEGNNG----VIILAATNRPESLDPALTRPGRFDRRVPVELPDLAG 338

Query: 188 LKTIVQRGAKLTGLAVT 204
            + I++  AK    +  
Sbjct: 339 REAILKVHAKKIKASDD 355


>gi|157364388|ref|YP_001471155.1| ATP-dependent metalloprotease FtsH [Thermotoga lettingae TMO]
 gi|310946767|sp|A8F7F7|FTSH_THELT RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|157314992|gb|ABV34091.1| ATP-dependent metalloprotease FtsH [Thermotoga lettingae TMO]
          Length = 626

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 57/248 (22%), Positives = 91/248 (36%), Gaps = 27/248 (10%)

Query: 26  TLEEFTGQVEACSNLK---VFI----EAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  EA   LK   +F+      +K  A     +L VGPPG GKT LA+ VA E 
Sbjct: 160 TFKDVAGVDEAVEELKETVLFLKDPGRFSKIGARMPKGILLVGPPGTGKTLLARAVAGEA 219

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F   SG       V   A  +  L    +     ++FIDEI  +       L    +
Sbjct: 220 NVPFFHISGSDFVELFVGVGAARVRDLFNQAKANAPCIVFIDEIDAVGRHRGAGLGGGHD 279

Query: 131 DFQLD----LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
           + +      L+  +G   R          ++AAT R  +L   L    RF   + L+  +
Sbjct: 280 EREQTLNQLLVEMDGFDVRQG------IVVMAATNRPDILDPALLRPGRFDKKVVLDTPD 333

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +   + I++  A+   +A   +        +         L+      A       I  E
Sbjct: 334 VRGREEILKIHARNKPIAEDVDIRVLAQRTTGFVGADLENLVNEAALLAARNGRDKIKME 393

Query: 245 IADAALLR 252
             + A+ R
Sbjct: 394 DFEEAIDR 401


>gi|119719184|ref|YP_919679.1| replication factor C large subunit [Thermofilum pendens Hrk 5]
 gi|150415669|sp|A1RWU6|RFCL_THEPD RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|119524304|gb|ABL77676.1| replication factor C large subunit [Thermofilum pendens Hrk 5]
          Length = 413

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 72/222 (32%), Gaps = 24/222 (10%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
                 RP  + +  G  EA      +I +      +    L  GPPG GKT++    A+
Sbjct: 10  PWTEKYRPARIADVVGNEEAKKKYVAWINSWVKGKPSKKAALLYGPPGSGKTSIVHATAK 69

Query: 77  ELGVNFRSTSGPVIAKAGDLAALLTNLED--------RDVLFIDEIHRLSIIVEEILYPA 128
           E        +   +     L   L    +          ++ +DE+  +S   +     A
Sbjct: 70  EFSWELIELNASDVRTREALQQRLLGALNTRSVLGYSGKIILLDEVDGISTKEDAGGLQA 129

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
                +  ++ +               ++ A         PL+D   +       + + +
Sbjct: 130 -----IVELIEKSNWP----------IVLTANDPWDPKLRPLRDLCELIEFKKIGKRDIM 174

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230
           K +++      G+  + E    IA  ++G  R A   L+ + 
Sbjct: 175 K-VLENICSKEGVECSREVLSAIADNAKGDLRAAINDLQSLA 215


>gi|15232908|ref|NP_186894.1| cell division protein ftsH, putative [Arabidopsis thaliana]
 gi|6957708|gb|AAF32452.1| cell division protein FtsH-like protein [Arabidopsis thaliana]
 gi|17065470|gb|AAL32889.1| cell division protein FtsH-like protein [Arabidopsis thaliana]
 gi|30725442|gb|AAP37743.1| At3g02450 [Arabidopsis thaliana]
 gi|332640288|gb|AEE73809.1| putative cell division protein ftsH [Arabidopsis thaliana]
          Length = 622

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 59/242 (24%), Positives = 90/242 (37%), Gaps = 24/242 (9%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           +E     E  S L+  I   K  A     VL VGPPG GKT LA+ VA E GV F S S 
Sbjct: 344 DELV---EIVSCLQGSINYKKLGARLPRGVLLVGPPGTGKTLLARAVAGEAGVPFFSVSA 400

Query: 88  PVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
                      A  +  L          ++FIDE+  +        +    D  L+ ++ 
Sbjct: 401 SEFVELFVGRGAARIRDLFNAARKNSPSIIFIDELDAVGGKR-GRSFNDERDQTLNQLLT 459

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAK 197
           E     S      +  +IAAT R   L + L    RF   + +   + E  + I+     
Sbjct: 460 EMDGFESDT----KVIVIAATNRPEALDSALCRPGRFSRKVLVAEPDQEGRRKIL--AIH 513

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD----FAEVAHAKTITREIADAALLRL 253
           L  + + ++A     + +  TP   G  L  + +     A     + + RE    A+ R 
Sbjct: 514 LRDVPLEEDAFLICDLVASLTPGFVGADLANIVNEAALLAARRGGEAVAREDIMEAIERA 573

Query: 254 AI 255
             
Sbjct: 574 KF 575


>gi|8439575|gb|AAF74998.1| cdc48-like protein [Entamoeba histolytica]
          Length = 772

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/202 (21%), Positives = 73/202 (36%), Gaps = 25/202 (12%)

Query: 23  RPRTL--EEFTGQVEACSNLKVFIEAAKARA--------EALDHVLFVGPPGLGKTTLAQ 72
           RP  L  ++  G       ++  +E              +    VL  GPPG GKT +A+
Sbjct: 196 RPDDLGYDDIGGCRRQLGQIREMVELPLRHPQLFQAIGIKPPKGVLLYGPPGCGKTMIAR 255

Query: 73  VVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEI 124
            VA E GV     +GP I         G+L       E     ++FIDEI  ++    + 
Sbjct: 256 AVANETGVFLILINGPEIMSKMAGESEGNLREAFAEAEKNAPALIFIDEIDSIAPKR-DK 314

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNF 182
               +E   +  ++           + S   ++AAT R   + + L+   RF   I +  
Sbjct: 315 AQGEVERRVVAQLLTL----MDGMKSRSNVIVMAATNRPNAIDSALRRFGRFDREIDIGV 370

Query: 183 YEIEDLKTIVQRGAKLTGLAVT 204
            +      I+    K   +A  
Sbjct: 371 PDETGRLEILNIHTKKMKIADD 392



 Score = 39.7 bits (91), Expect = 0.64,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 42/106 (39%), Gaps = 16/106 (15%)

Query: 28  EEFTGQVEACSNLKVFIEA--------AKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           E+  G  +    LK  ++          K   E    VLF GPPG GKT LA+ VA +  
Sbjct: 476 EDIGGLEDVKRELKEVVQYPVEFPDKFTKFGMEPSKGVLFFGPPGCGKTLLAKAVASQCK 535

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRL 117
            NF S  GP +          ++  +          VLF DE+  +
Sbjct: 536 ANFISIKGPELLTMWYGESEANVRDVFDKARQAAPCVLFFDELDSI 581


>gi|8132824|gb|AAF73407.1|AF230642_1 ClpX [Ehrlichia chaffeensis]
          Length = 443

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/124 (26%), Positives = 53/124 (42%), Gaps = 25/124 (20%)

Query: 25  RTLEEF-TGQVEACSNLKVFIEAAKARAEALD----------HVLFVGPPGLGKTTLAQV 73
           + L+E+  GQ  +   L V +     R   L           +VL +GP G GKT LA+ 
Sbjct: 66  KVLDEYVIGQEHSKKVLSVAVYNHYKRLSNLSVISEVEISKSNVLLIGPTGSGKTLLART 125

Query: 74  VARELGVNFRSTSGPVIAKAG----DLAALLTNL----------EDRDVLFIDEIHRLSI 119
           +AR L + F       + +AG    D+  +L  L            R +++IDE+ ++S 
Sbjct: 126 LARVLQIPFAMADATTLTEAGYVGEDVENILLKLLQAANFNVDAAQRGIIYIDEVDKISR 185

Query: 120 IVEE 123
             E 
Sbjct: 186 KSEN 189


>gi|68535343|ref|YP_250048.1| cell division protein [Corynebacterium jeikeium K411]
 gi|68262942|emb|CAI36430.1| cell division protein [Corynebacterium jeikeium K411]
          Length = 796

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 61/262 (23%), Positives = 101/262 (38%), Gaps = 23/262 (8%)

Query: 25  RTLEEFTGQVEACSNLKVFIE--AAKARAEALD-----HVLFVGPPGLGKTTLAQVVARE 77
            T ++  G  EA   L    +     +R EAL       VL  GPPG GKT LA+ VA E
Sbjct: 165 TTFDDVAGADEAVEELDEIRDFLTDPSRYEALGAKIPRGVLLYGPPGTGKTLLARAVAGE 224

Query: 78  LGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
            GV F + SG       V   A  +  L    ++    ++F+DEI  +       +    
Sbjct: 225 AGVPFFTISGSDFVEMFVGVGASRVRDLFKQAKENSPCIIFVDEIDAVGRQRGAGMGGGH 284

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
           ++ +  L   +         +     L+AAT R  +L   L    RF   I +   ++  
Sbjct: 285 DEREQTL--NQLLVEMDGFGDRDGVILMAATNRPDILDPALLRPGRFDRQIPVTNPDLAG 342

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            + I+   AK   LA       ++   ++ T  ++G  L  V + A +  A+     I  
Sbjct: 343 REQILNVHAKDKPLAKD----VDLKSLAKRTAGMSGADLENVLNEAALLTARVEGNVITA 398

Query: 248 AALLRLAIDKMGFDQLDLRYLT 269
            AL       +G  +   + ++
Sbjct: 399 DALEEATDRVVGGPRRSSKIIS 420


>gi|329769333|ref|ZP_08260749.1| hypothetical protein HMPREF0433_00513 [Gemella sanguinis M325]
 gi|328839136|gb|EGF88721.1| hypothetical protein HMPREF0433_00513 [Gemella sanguinis M325]
          Length = 662

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 59/244 (24%), Positives = 89/244 (36%), Gaps = 19/244 (7%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKAR-------AEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  E    L   +E  K         A+    VL  GPPG GKT LA+ VA E 
Sbjct: 166 TFNDVAGADEEKQELAEMVEFLKDHRKFTKMGAKIPKGVLLEGPPGTGKTLLARAVAGEA 225

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  L    E     ++FIDEI  +       +    +
Sbjct: 226 KVPFFSISGSDFVEMFVGVGASRVRDLFKEAEKNAPCIIFIDEIDAVGRKRGSGVGGGND 285

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
           + +  L   +               +IAAT R  +L N L+   RF   I+++  +++  
Sbjct: 286 EREQTL--NQLLVEMDGFDGEKGIIVIAATNRADVLDNALRRPGRFDRQIKVSTPDVKGR 343

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           + I++  AK   LA   E           +      +L      A   +   I +   D 
Sbjct: 344 EAILKVHAKNKPLAKDVELRSLAEKTPGFSGADLANILNEAALLAARENKNAIEKSDLDE 403

Query: 249 ALLR 252
           A+ R
Sbjct: 404 AMDR 407


>gi|317182029|dbj|BAJ59813.1| DNA polymerase III subunits gamma and tau [Helicobacter pylori F57]
          Length = 571

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 78/256 (30%), Gaps = 59/256 (23%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA------- 75
           RP+   E  GQ      L + ++  +         LF G  G GKT+ +++ A       
Sbjct: 9   RPKHFSELVGQESVAKTLSLALDNQRLANAY----LFSGLRGSGKTSSSRIFARALMCEE 64

Query: 76  -----------------RELGVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFID 112
                                ++     G       D+  L+             +  ID
Sbjct: 65  GPKAVPCDTCTQCQSALNNHHIDIIEMDGASNRGIDDVRNLIEQTRYKPSFGRYKIFIID 124

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H  +      L   +E+                    S    + ATT    L   +  
Sbjct: 125 EVHMFTTEAFNALLKTLEE------------------PPSHVKFLLATTDALKLPATILS 166

Query: 173 R---FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           R   F          I  LKTI++       ++    A  ++A   +G+ R    LL + 
Sbjct: 167 RTQHFRFKKIPENSVISHLKTILE----KEQVSYETSALEKLAHSGQGSLRDTITLLEQA 222

Query: 230 RDFAEVAHAKTITREI 245
            ++ + A  ++   E+
Sbjct: 223 INYCDNAITESKVAEM 238


>gi|316970673|gb|EFV54564.1| putative ATP-dependent protease La [Trichinella spiralis]
          Length = 884

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 60/344 (17%), Positives = 126/344 (36%), Gaps = 70/344 (20%)

Query: 13  SQEDADISLLRPRT-LE-EFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTT 69
           ++E+ D+S  R +T L+ +  G  +    +  FI  +K +      ++   GPPG+GKT+
Sbjct: 403 TEENFDLS--RAKTVLDNDHYGMDDVKERIFEFIAVSKMKGSVQGKIICLHGPPGVGKTS 460

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTN----------------LEDRDVLFIDE 113
           +A+ +A  L   +   S   +    ++                      + +  ++ IDE
Sbjct: 461 IARSIATALNREYFRFSVGGMTDVAEIKGHRRTYVGSMPGKIIQCLKKVMSENPLILIDE 520

Query: 114 IHRL---------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164
           I ++         +  + E+L P      LD           V ++LS+   I     + 
Sbjct: 521 IDKIGHASYHGDPTSALLELLDPQQNCNFLD-------HYLDVAVDLSKVLFICTANVIN 573

Query: 165 LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGR 224
            +  PL+DR  + I ++ Y  E+   I ++   L    + +    +  +           
Sbjct: 574 TIPEPLRDRMEM-IEVSGYVAEEKLNIAKKY--LIPQTMAECGIKDGIISIEN-----NS 625

Query: 225 LLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIET 284
           L   ++ +   +  + + ++I    +LR    K+   Q +   +T               
Sbjct: 626 LELLIKQYCRESGVRNLRKQIEK--ILRKGAYKLTSGQAERLVITT-------------- 669

Query: 285 ISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328
                    +  E + +P  I       TP G ++M +AW  +G
Sbjct: 670 --------ENLHEYVGKPIFIHDRLYDFTPPG-VVMGMAWTGMG 704


>gi|297379917|gb|ADI34804.1| DNA polymerase III, subunits gamma and tau [Helicobacter pylori
           v225d]
          Length = 582

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 78/256 (30%), Gaps = 59/256 (23%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA------- 75
           RP+   E  GQ      L + ++  +         LF G  G GKT+ +++ A       
Sbjct: 9   RPKHFSELVGQESVAKTLSLALDNQRLANAY----LFSGLRGSGKTSSSRIFARALMCEE 64

Query: 76  -----------------RELGVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFID 112
                                ++     G       D+  L+             +  ID
Sbjct: 65  GPKAVPCDTCTQCQSALNNHHIDIIEMDGASNRGIDDVRNLIEQTRYKPSFGRYKIFIID 124

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H  +      L   +E+                    S    + ATT    L   +  
Sbjct: 125 EVHMFTTEAFNALLKTLEE------------------PPSHVKFLLATTDALKLPATILS 166

Query: 173 R---FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           R   F          I  LKTI++       ++    A  ++A   +G+ R    LL + 
Sbjct: 167 RTQHFRFKKIPENSVISHLKTILE----KEQVSYETSALEKLAHSGQGSLRDTITLLEQA 222

Query: 230 RDFAEVAHAKTITREI 245
            ++ + A  ++   E+
Sbjct: 223 INYCDNAITESKVAEM 238


>gi|166712462|ref|ZP_02243669.1| cell division protein [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 648

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 52/246 (21%), Positives = 85/246 (34%), Gaps = 23/246 (9%)

Query: 26  TLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  EA   +   +       +  K   +    VL VGPPG GKT LA+ +A E 
Sbjct: 165 TFADVAGCDEAKEEVGELVDFLRDPTKFTKLGGKIPRGVLMVGPPGTGKTLLAKAIAGEA 224

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  +    +     ++FIDEI  +       L    +
Sbjct: 225 KVPFFSISGSDFVEMFVGVGASRVRDMFEQAKKHAPCIIFIDEIDAVGRHRGAGLGGGHD 284

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E       +       +IAAT R  +L   L    RF   + +   +++
Sbjct: 285 EREQTLNQLLVEMDGFEGGEG----VIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVK 340

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I+    +   LA               +      L      FA     K +  +  
Sbjct: 341 GREQILHVHMRKLPLADDVVPMVIARGTPGFSGADLANLCNEAALFAARGSEKEVRMDHF 400

Query: 247 DAALLR 252
           D A  +
Sbjct: 401 DRARDK 406


>gi|157132226|ref|XP_001662523.1| spermatogenesis associated factor [Aedes aegypti]
 gi|108871250|gb|EAT35475.1| spermatogenesis associated factor [Aedes aegypti]
          Length = 720

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 52/263 (19%), Positives = 91/263 (34%), Gaps = 38/263 (14%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARA--------EALDHVLFVGPPGLGKTTLAQVVARELG 79
           ++  G  +  + +K  +E              +    +L  GPPG GKT +A+ VA E G
Sbjct: 201 DDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVANETG 260

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMED 131
             F   +GP I          +L       E +   ++FIDE+  ++   E+        
Sbjct: 261 AFFFLINGPEIMSKLAGESESNLRKAFEEAEKKSPAIIFIDELDAIAPKREKTHGEVERR 320

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
               L+       +S     S   ++AAT R   +   L+   RF   I +   +     
Sbjct: 321 IVSQLLTLMDGMKKS-----SHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRL 375

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            +++  +K   LA  D    +IA  S G        L               +       
Sbjct: 376 EVLRIHSKNMKLA-DDVDLEQIAAESHGHVGADLASL--------------CSEAALQQI 420

Query: 250 LLRLAIDKMGFDQLDLRYLTMIA 272
             ++ +  +  DQ+D   L  +A
Sbjct: 421 REKMDLIDLEDDQIDAEVLNSLA 443



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 70/199 (35%), Gaps = 22/199 (11%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVAR 76
            T  +  G       L+  ++      +            VLF GPPG GKT LA+ +A 
Sbjct: 471 TTWHDIGGLENVKRELQELVQYPVEHPDKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIAN 530

Query: 77  ELGVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127
           E   NF S  GP +         A   D+     +     VLF DE+  ++      +  
Sbjct: 531 ECQANFISVKGPELLTMWFGESEANVRDIFDKARSASP-CVLFFDELDSIAKSRGGNVGD 589

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           A      D ++ +  +            +I AT R  ++   +    R    I +   + 
Sbjct: 590 A--GGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDD 647

Query: 186 EDLKTIVQRGAKLTGLAVT 204
           +  + I++   + + +A  
Sbjct: 648 KSREAILKANLRKSPVAGD 666


>gi|325960163|ref|YP_004291629.1| AAA ATPase central domain-containing protein [Methanobacterium sp.
           AL-21]
 gi|325331595|gb|ADZ10657.1| AAA ATPase central domain protein [Methanobacterium sp. AL-21]
          Length = 373

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 55/242 (22%), Positives = 93/242 (38%), Gaps = 19/242 (7%)

Query: 28  EEFTGQVEACSNLKV----FIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFR 83
           E+  GQ  A +  K+      E  K +  A  +VLF G PG GKT LA+ ++ EL V   
Sbjct: 127 EDVIGQERAKTKCKIITMYLKEPEKFKEWAPRNVLFHGTPGTGKTMLAKSLSNELNVPLY 186

Query: 84  STSGPVI--AKAGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                 +     GD A  +  L +        V+FIDE+  + +  +           ++
Sbjct: 187 LVKATSLIGEHVGDGARQIHELFEMAAANAPSVIFIDEMDAIGLDRKFQSLRGDVSEVVN 246

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
            ++ E         + +    I AT    L+   ++ RF   I     + +D K I++  
Sbjct: 247 ALLTE----MDGIDHHNGVVTIGATNNPHLIDFAIRSRFEEEIEFTLPDEKDRKAILELY 302

Query: 196 AKLTGLAVTDEAACEIAMRSRGTP--RIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
            +   L  TD    ++   ++G     I  R+L+     A     + IT      AL + 
Sbjct: 303 IETLPLK-TDFNIEKLVKCTKGMSGRDIKDRVLKVALHKAIFEDQEIITWGHCKYALKQH 361

Query: 254 AI 255
            I
Sbjct: 362 KI 363


>gi|303246049|ref|ZP_07332330.1| Adenosinetriphosphatase [Desulfovibrio fructosovorans JJ]
 gi|302492445|gb|EFL52316.1| Adenosinetriphosphatase [Desulfovibrio fructosovorans JJ]
          Length = 503

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 50/199 (25%), Positives = 73/199 (36%), Gaps = 24/199 (12%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVAR 76
            T  +  G  +    L+  +E      E L H        VL  GPPG GKT LA+ VA 
Sbjct: 218 TTYADVGGLDKVIRILRETVELPLKHPEVLRHLGISPPRGVLLYGPPGCGKTLLARAVAH 277

Query: 77  ELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIV-EEILYP 127
           E G  F S SGP +          +L  L    +     V+F DEI  ++     +    
Sbjct: 278 ESGARFFSVSGPELITKWHGESEENLRNLFDEAQKSQPAVVFFDEIDAIAQARSSDESLR 337

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
               F   L+            +L R  ++A T R+ LL   L    RF   I +   + 
Sbjct: 338 LDSRFTTQLLTILDGIH-----DLGRVAVLATTNRMDLLDQALLRPGRFDRLIEIPPPDR 392

Query: 186 EDLKTIVQRGAKLTGLAVT 204
           +  + I+    +   LA  
Sbjct: 393 DGCRKILHIHVQKLPLAKD 411


>gi|310287909|ref|YP_003939167.1| ATP-dependent zinc metallopeptidase involved in cell division
           [Bifidobacterium bifidum S17]
 gi|311064790|ref|YP_003971515.1| cell division protein FtsH [Bifidobacterium bifidum PRL2010]
 gi|309251845|gb|ADO53593.1| ATP-dependent zinc metallopeptidase involved in cell division
           [Bifidobacterium bifidum S17]
 gi|310867109|gb|ADP36478.1| FtsH Cell division protein [Bifidobacterium bifidum PRL2010]
          Length = 697

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 49/210 (23%), Positives = 79/210 (37%), Gaps = 16/210 (7%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108
           VL  GPPG GKT LA+ +A E GV F + +G       V   A  +  L    +     +
Sbjct: 252 VLLYGPPGTGKTLLARAIAGEAGVPFYAMAGSDFVEMFVGLGASRVRDLFDEAKKNAPAI 311

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLL 166
           +FIDEI  +       +    ++ +  L  ++ E     S    +    +IAAT R  +L
Sbjct: 312 IFIDEIDAVGRKRGSGMSGGHDEREQTLNQLLVEMDGFDSDTNLI----IIAATNRPDVL 367

Query: 167 TNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGR 224
              L    RF   + +   ++E  + I++  AK        +           T      
Sbjct: 368 DPALLRPGRFDRQVSVEAPDLEGREAILKVHAKGKPFVPDVDLHMVAVRTPGFTGADLAN 427

Query: 225 LLRRVRDFAEVAHAKTITREIADAALLRLA 254
           +L         A A+ I     D A+ R+ 
Sbjct: 428 VLNEAALLCARAGAQLIDNRAIDEAIDRVQ 457


>gi|284173019|ref|YP_003406400.1| ATPase AAA [Haloterrigena turkmenica DSM 5511]
 gi|284017779|gb|ADB63727.1| AAA ATPase central domain protein [Haloterrigena turkmenica DSM
           5511]
          Length = 317

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 48/215 (22%), Positives = 78/215 (36%), Gaps = 20/215 (9%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL------E 104
             + +LF GPPG GKT  A+ +A ELG  +   S   I      +    +  L       
Sbjct: 108 PPNGILFYGPPGTGKTLFARAIAGELGHPYLELSAGDIKSRWVNESTEQVNQLFAEAAQF 167

Query: 105 DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164
           DR V+FIDEI  L    +  L+                    +  +   + +IAAT R  
Sbjct: 168 DRCVIFIDEIDALLASRDNNLHREHAQVV-------NEFLAHLDADDPNYLVIAATNRAE 220

Query: 165 LLTNPL--QDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
           LL      + RF     L   + +  + I +         + + A  ++A     T  ++
Sbjct: 221 LLDEAATRRGRFDQQYELGLPDRDAREAIFRVQLDELPTDLDNNAYRKMA---EQTEGLS 277

Query: 223 GRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257
              +  + D A +  A+    E+    L     DK
Sbjct: 278 SADIVGIVDDAAMRAAERDADELTLEDLHMSLPDK 312


>gi|288930616|ref|YP_003434676.1| ATPase AAA, CDC48 subfamily [Ferroglobus placidus DSM 10642]
 gi|288892864|gb|ADC64401.1| AAA family ATPase, CDC48 subfamily [Ferroglobus placidus DSM 10642]
          Length = 791

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 48/190 (25%), Positives = 72/190 (37%), Gaps = 31/190 (16%)

Query: 26  TLEEFTGQVEACSNLKVFIEAA-----------KARAEALDHVLFVGPPGLGKTTLAQVV 74
           T E+  G       L++  E             +   E    VL  GPPG GKT +A+ V
Sbjct: 177 TYEDIGG---LKRELRLVREMIELPLKHPELFERLGIEPPKGVLLYGPPGTGKTLIAKAV 233

Query: 75  ARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILY 126
           A E+  +F   SGP I           L  +     +    ++FIDEI  ++   EE+  
Sbjct: 234 ANEVNAHFIPISGPEIMSKYYGESEQRLREIFEEARENAPSIIFIDEIDSIAPKREEVTG 293

Query: 127 PAMEDFQLDLMV-GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183
                    L+   +G  AR       +  +I AT R   +   L+   RF   I +   
Sbjct: 294 EVERRVVAQLLTLMDGLEAR------GQVIVIGATNRPDAIDPALRRPGRFDREIEIGVP 347

Query: 184 EIEDLKTIVQ 193
           + E  K I+Q
Sbjct: 348 DREGRKEILQ 357



 Score = 52.4 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 64/300 (21%), Positives = 101/300 (33%), Gaps = 41/300 (13%)

Query: 15  EDADISLLR------PR-TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLF 59
           ++ + S +R      P+ T  +  G   A   L+  +E      E            +L 
Sbjct: 493 KNIEPSAMREVLVEVPKVTWNDIGGLEHAKQELREAVEWPFKYPELFKAVGIKPPKGILL 552

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLAALLTNLEDRD------VLFI 111
            GPPG GKT LA+ VA E   NF S  GP +     G+    +  +  +       VLF 
Sbjct: 553 YGPPGTGKTLLAKAVANESNANFISVKGPELLSKWVGESEKHVREMFRKARQVAPCVLFF 612

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DEI  L+          + +  +  ++ E          L    +IAAT R  ++   L 
Sbjct: 613 DEIDSLAPRRGTGGDTHVTERVVSQLLTELDGLE----ELKDVVVIAATNRPDMIDPALL 668

Query: 172 DRFGIPIRLNFYEIE-----DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTP----RIA 222
               +   +     +     ++  I  RG  L      +E A +    S        R A
Sbjct: 669 RPGRLERHIYIPPPDEKARLEIFKIHTRGMPLDEDVNLEELAKKTEGYSGADIEAVCREA 728

Query: 223 GRLLRR-----VRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGG 277
           G L  R     V+   EV  A    +         L   K    + D+     I ++F  
Sbjct: 729 GMLAIREAIANVKSEEEVKEAARKIKVSKRHFEEALRKIKPSLTKEDIERYEKIVKDFQK 788


>gi|212543965|ref|XP_002152137.1| mitochondrial serine protease Pim1, putative [Penicillium marneffei
           ATCC 18224]
 gi|210067044|gb|EEA21137.1| mitochondrial serine protease Pim1, putative [Penicillium marneffei
           ATCC 18224]
          Length = 1116

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 48/268 (17%), Positives = 88/268 (32%), Gaps = 38/268 (14%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI   K R      +L  VGPPG+GKT++ + +AR L   +   S
Sbjct: 577 EDHYGLKDVKDRILEFIAVGKLRGSVEGKILCLVGPPGVGKTSIGKSIARALNRQYYRFS 636

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ ++    +        
Sbjct: 637 VGGLTDVAEIKGHRRTYVGALPGRIIQALKKCQTENPLILIDEVDKIGRGHQGDPASALL 696

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V ++LS+   +        +  PL DR  +     +
Sbjct: 697 ELLDPEQNSSFLD-------HYMDVPVDLSKVLFVCTANVTDTIPRPLLDRMELIELSGY 749

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
              E +       A         E +    +           L++     + V + K   
Sbjct: 750 VADEKMA-----IADKYLAPAAKELSGLKDVDVCLQEDAIEELIKFYCRESGVRNLKKQI 804

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTM 270
            ++   A L++  D +G D L    LT 
Sbjct: 805 EKVYRKAALKIVQD-LGEDALPEEALTT 831


>gi|198274939|ref|ZP_03207471.1| hypothetical protein BACPLE_01098 [Bacteroides plebeius DSM 17135]
 gi|198272386|gb|EDY96655.1| hypothetical protein BACPLE_01098 [Bacteroides plebeius DSM 17135]
          Length = 628

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 79/234 (33%), Gaps = 38/234 (16%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLK--VFIEAAKARAEAL------ 54
           + +  L  + +  DA+      + L+E  G      +L+    +     R   L      
Sbjct: 321 EEDNPLPEDDTPSDAE------QALQEMVGLTRLKEDLREARMLATFMKRRMELGLDTEL 374

Query: 55  ---DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA-------------GDLAA 98
               H+LF+G PG GKT +A+++ +        +SG  I                  +  
Sbjct: 375 DNRHHMLFLGNPGTGKTMVAKLIGQLYHQMGLLSSGHTIETCRTKLVGEYIGETEKHIRQ 434

Query: 99  LLTNLEDRDVLFIDEIHRLSIIVEE--ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTL 156
            +       VLFIDE + L    +E       +    L ++    P    +         
Sbjct: 435 AIEEARGG-VLFIDEAYTLITTKQETKDFGKEVIHALLTVLSEPNPDMIIILAGYEDKMQ 493

Query: 157 IAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACE 210
               T  G     LQ+RF +    + Y  ++L  +  R  +     +T EA  E
Sbjct: 494 QMLRTNPG-----LQERFPLQFYFDDYNADELMEMAHRLLQKRNFQLTPEADKE 542


>gi|89097402|ref|ZP_01170291.1| ATP-dependent metalloprotease FtsH [Bacillus sp. NRRL B-14911]
 gi|89087698|gb|EAR66810.1| ATP-dependent metalloprotease FtsH [Bacillus sp. NRRL B-14911]
          Length = 579

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 57/247 (23%), Positives = 89/247 (36%), Gaps = 25/247 (10%)

Query: 26  TLEEFTG-QVEACSNLKVFIEAAKARA-------EALDHVLFVGPPGLGKTTLAQVVARE 77
           T+++  G Q E    +   +   K R        +    +L  GPPG GKT LAQ +A+E
Sbjct: 150 TMDDIGGLQDEMKEEILQTLSIIKDREASIQLGVKPPKGILLYGPPGTGKTLLAQAIAKE 209

Query: 78  LGVNFRSTSGPVIA------KAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
           +G +F STSG           A  + +L  N       V+FIDE+  L+   ++      
Sbjct: 210 IGASFFSTSGSSFNEMFVGVGASRVRSLFQNARKHSPAVVFIDEVDALAGKRKQHGGDES 269

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
           E    +L+V       +  I       IAAT R  +L +      R      +   + + 
Sbjct: 270 EKTLTELLVQLDGGHSNDGIL-----FIAATNRKDMLDDAFLRPGRIDFSFLVPLPDTKG 324

Query: 188 LKTIVQRG--AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
            + I+      KL    V           S  +      L       A     + I +E 
Sbjct: 325 RQEIISIHTKGKLLAEDVAASLPALAESTSGFSGADISSLFETASRRAIRNGKEKIDKED 384

Query: 246 ADAALLR 252
            D A+ R
Sbjct: 385 LDFAIDR 391


>gi|296229993|ref|XP_002760519.1| PREDICTED: nuclear valosin-containing protein-like isoform 2
           [Callithrix jacchus]
          Length = 765

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 46/212 (21%), Positives = 72/212 (33%), Gaps = 16/212 (7%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--V 108
           VL  GPPG GKT LA  +A EL +     + P I           L  L          +
Sbjct: 210 VLLHGPPGCGKTLLAHAIAGELDLPILKVAAPEIVSGVSGESEQKLRELFEQAVSNAPCI 269

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +FIDEI  ++   E             L+            + +R  +I AT R   L  
Sbjct: 270 IFIDEIDAITPKREVASKDMERRIVAQLLTCMDDLNNV--ASTARVLVIGATNRPDSLDP 327

Query: 169 PLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
            L+   RF   I L   +    + I+Q   +   L      A +    +  TP   G  L
Sbjct: 328 ALRRAGRFDREICLGIPDEASRERILQTLCRKLRLPQ----AFDFCHLAHLTPGFVGADL 383

Query: 227 RRVRDFAEVAHAKTITREIADAALLRLAIDKM 258
             +   A +     +  ++ +       +D +
Sbjct: 384 MALCREAAMCAVNRVLMKLQEQQKKDPEMDDL 415



 Score = 43.5 bits (101), Expect = 0.048,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 8/76 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL  GPPG GKT LA+ VA E G+NF S  GP +     G+    +  +  R       V
Sbjct: 527 VLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQIFQRAKNSAPCV 586

Query: 109 LFIDEIHRLSIIVEEI 124
           +F DE+  L     + 
Sbjct: 587 IFFDEVDALCPRRSDR 602


>gi|255264093|ref|ZP_05343435.1| cell division protease FtsH [Thalassiobium sp. R2A62]
 gi|255106428|gb|EET49102.1| cell division protease FtsH [Thalassiobium sp. R2A62]
          Length = 638

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 57/245 (23%), Positives = 101/245 (41%), Gaps = 27/245 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  EA   L+  +E        ++   +     L  GPPG GKT LA+ +A E 
Sbjct: 152 TFDDVAGIDEAKEELEEIVEFLRNPQKFSRLGGKIPKGALLEGPPGTGKTLLARAIAGEA 211

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F + SG       V   A  +  +    +     ++FIDEI  +       +    +
Sbjct: 212 GVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKNAPCIVFIDEIDAVGRARGVGMGGGND 271

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E     + +       +IAAT R  +L   L    RF   + +   +I+
Sbjct: 272 EREQTLNQLLVEMDGFEANEG----VIIIAATNRKDVLDPALLRPGRFDRQVSVGNPDIK 327

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I+   A+ + L        ++ + +RGTP  +G  L  + + A +  A+   R +A
Sbjct: 328 GREKILGVHARKSPLGPD----VDLRIIARGTPGFSGADLANLINEAALGAARIGRRFVA 383

Query: 247 DAALL 251
            A L 
Sbjct: 384 MADLE 388


>gi|217033792|ref|ZP_03439218.1| hypothetical protein HP9810_7g73 [Helicobacter pylori 98-10]
 gi|216943841|gb|EEC23281.1| hypothetical protein HP9810_7g73 [Helicobacter pylori 98-10]
          Length = 573

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 78/256 (30%), Gaps = 59/256 (23%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA------- 75
           RP+   E  GQ      L + ++  +         LF G  G GKT+ +++ A       
Sbjct: 9   RPKHFSELVGQESVAKTLSLALDNQRLANAY----LFSGLRGSGKTSSSRIFARALMCEE 64

Query: 76  -----------------RELGVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFID 112
                                ++     G       D+  L+             +  ID
Sbjct: 65  GPKAVPCDTCTQCQSALNNHHIDIIEMDGASNRGIDDVRNLIEQTRYKPSFGRYKIFIID 124

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H  +      L   +E+                    S    + ATT    L   +  
Sbjct: 125 EVHMFTTEAFNALLKTLEE------------------PPSHVKFLLATTDALKLPATILS 166

Query: 173 R---FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           R   F          I  LKTI++       ++    A  ++A   +G+ R    LL + 
Sbjct: 167 RTQHFRFKKIPENSVISHLKTILE----KEQVSYETSALEKLAHSGQGSLRDTITLLEQA 222

Query: 230 RDFAEVAHAKTITREI 245
            ++ + A  ++   E+
Sbjct: 223 INYCDNAITESKVAEM 238


>gi|254467968|ref|ZP_05081374.1| cell division protein [beta proteobacterium KB13]
 gi|207086778|gb|EDZ64061.1| cell division protein [beta proteobacterium KB13]
          Length = 631

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 53/252 (21%), Positives = 92/252 (36%), Gaps = 27/252 (10%)

Query: 25  RTLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
            T  +  G  EA   +   +       +  K        VL VGPPG GKT LA+ +A E
Sbjct: 153 TTFADVAGCDEAKEEVTELVDFLRDPNKFHKLGGRIPRGVLMVGPPGTGKTLLARAIAGE 212

Query: 78  LGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
             V F + SG       V   A  +  +    +     ++FIDEI  +       +    
Sbjct: 213 AKVPFYTISGSDFVEMFVGVGAARVRDMFEQAKKNSPCIVFIDEIDAVGRHRGAGMGGGN 272

Query: 130 EDFQLD----LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183
           ++ +      L+  +G  A S  I      +IAAT R  +L   L    RF   + ++  
Sbjct: 273 DEREQTLNQLLVEMDGFEANSGVI------VIAATNRADVLDKALLRPGRFDRQVAVSLP 326

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           +I+  + I+    +        +A          +      L+     FA     +T+T 
Sbjct: 327 DIKGREQILNVHMRKIPSDADVKADILARGTPGFSGADLANLVNEAALFAARRSHRTVTM 386

Query: 244 EIADAALLRLAI 255
           +  + A  ++ +
Sbjct: 387 QDFEDAKDKIYM 398


>gi|83312305|ref|YP_422569.1| ATP-dependent Zn protease [Magnetospirillum magneticum AMB-1]
 gi|82947146|dbj|BAE52010.1| ATP-dependent Zn protease [Magnetospirillum magneticum AMB-1]
          Length = 546

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 56/249 (22%), Positives = 93/249 (37%), Gaps = 23/249 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAK-------ARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T E+  G  EA   L+  +E  K          +     L VGPPG GKT LA+ +A E 
Sbjct: 153 TFEDVAGIDEAKQELEEIVEFLKDPQKFQRLGGKIPKGCLLVGPPGTGKTLLARAIAGEA 212

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F + SG       V   A  +  +    +     ++FIDEI  +       L    +
Sbjct: 213 NVPFFTISGSDFVEMFVGVGASRVRDMFEQGKKNAPCIIFIDEIDAVGRHRGAGLGGGND 272

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E     S +       LIAAT R  +L   L    RF   + +   +I 
Sbjct: 273 EREQTLNQLLVEMDGFESNEG----VILIAATNRPDVLDPALLRPGRFDRQVVVPNPDIL 328

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++   +   L+   +A          +      L+      A  A  + +T    
Sbjct: 329 GREKIIKVHMRKVPLSPDVDARIIARGTPGFSGADLANLVNEAALLAARAGKRVVTMAEF 388

Query: 247 DAALLRLAI 255
           +AA  ++ +
Sbjct: 389 EAAKDKVMM 397


>gi|70941981|ref|XP_741212.1| 26S proteasome regulatory subunit 7 [Plasmodium chabaudi chabaudi]
 gi|56519448|emb|CAH83988.1| 26S proteasome regulatory subunit 7, putative [Plasmodium chabaudi
           chabaudi]
          Length = 295

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 82/248 (33%), Gaps = 20/248 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
           T  +  G  E    L+  +E    + E            VL  GPPG GKT  A+ +A  
Sbjct: 35  TYNDIGGCKEQLEKLREVVEMPLLQPERFVTLGIDPPKGVLLYGPPGTGKTLTARAIANR 94

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
               F    G  +        A  +  L    + +   +LFIDE+  +     +    A 
Sbjct: 95  TDACFICVIGSELVQKYVGEGARLVRELFQMAKSKKACILFIDEVDAIGGSRGDE--SAH 152

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            D ++   + E  +      N     +I AT R   L + L    R    I  +  ++E 
Sbjct: 153 GDHEVQRTMLEIVNQLDGFDNRGNIKVIMATNRPDTLDSALVRPGRIDRKIEFSLPDLEG 212

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
              I +  A    ++          +    T      +      FA  A  KTIT +   
Sbjct: 213 RTHIFKIHANTMNMSRDVRFELLARLCPNSTGSDIRSVCTEAGMFAIRARRKTITEKDLL 272

Query: 248 AALLRLAI 255
            A+ ++  
Sbjct: 273 LAINKVIH 280


>gi|328866875|gb|EGG15258.1| Putative FtsH protease [Dictyostelium fasciculatum]
          Length = 729

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 16/109 (14%)

Query: 23  RPR-TLEEFTGQVEACSNLKVFIEAAKARAE-------ALDHVLFVGPPGLGKTTLAQVV 74
           RP  T ++  G  EA S L+  ++  +   +           +L VGPPG GKT LA+ +
Sbjct: 194 RPTETFDDVVGAEEAKSELQDLVDYLRNPGKYAERNIVTPKGILLVGPPGTGKTLLAKAL 253

Query: 75  ARELGVNFRSTSGPVIA------KAGDLAALLTNLEDRD--VLFIDEIH 115
           A E  + F S +G           A  +  L          ++FIDEI 
Sbjct: 254 AGEARIPFISINGSEFEEMFIGVGAKRVRELFAEARKMAPCIVFIDEID 302


>gi|325959789|ref|YP_004291255.1| AAA family ATPase [Methanobacterium sp. AL-21]
 gi|325331221|gb|ADZ10283.1| AAA family ATPase, CDC48 subfamily [Methanobacterium sp. AL-21]
          Length = 729

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 69/318 (21%), Positives = 114/318 (35%), Gaps = 34/318 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
           T E+  G  E    ++  IE    R E            VL  GPPG GKT LA+ VA E
Sbjct: 201 TYEDIGGLKEEVKKVREMIEIPLKRPELFERLGIAPPKGVLMHGPPGTGKTLLAKAVANE 260

Query: 78  LGVNFRSTSGPVIAKA------GDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM 129
              +F + +GP I           L  L    E+    ++FIDEI  ++   EE+     
Sbjct: 261 SDAHFIAINGPEIMSKYVGGSEERLRELFEEAEENAPSIIFIDEIDAIAPKREEVSGEVE 320

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ-----DRFGIPIRLNFYE 184
                 L+            +  +  +I AT R   L   ++     DR       +   
Sbjct: 321 RRTVAQLLT-----LMDGLKSRGQVVVIGATNRPDALDAAIRRGGRFDREIEIGVPDKDG 375

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRI-----AGRLLRRVRDFAEVAHAK 239
             ++  I  RG  L      +E A                  A R+LRRV    ++   +
Sbjct: 376 RGEVLQIHTRGMPLDDKVDLEEMADITHGFVGADLESLCKEAAMRVLRRV--LPDIKGDE 433

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLT-MIARNFGGGPVGIETISAGLSEPRDAIED 298
            I++E     ++     K    ++    L  ++ +        I  +++   E ++A+E 
Sbjct: 434 EISKETLKKMIVTKTDFKEALKEVQPSALREVLVQVPDVKWDDIGGLTSAKQELQEAVEW 493

Query: 299 LIEPYMIQQGFIQRTPRG 316
            ++     + F  R PRG
Sbjct: 494 PLKYPESFEKFGVRPPRG 511



 Score = 49.3 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 56/165 (33%), Gaps = 16/165 (9%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DV 108
           VL  GPPG GKT LA+ VA E   NF +  GP +           +  +          V
Sbjct: 512 VLIYGPPGTGKTLLAKAVANESDANFIAVKGPELLSKWVGESEKGVREVFRKARQTAPTV 571

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +F DEI  ++         + +      +V +  +       L    +IAAT RV +L  
Sbjct: 572 IFFDEIDSIASAR---SGSSTDSGVTQRVVNQLLTEIDGLEELQDVAVIAATNRVDILDP 628

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAM 213
            L         +   + ++          +  +   D    E   
Sbjct: 629 ALTRPGRFDRHVKVDDPDETAR-----LSIFEVHTKDMPLAEDVD 668


>gi|303244483|ref|ZP_07330818.1| AAA family ATPase, CDC48 subfamily [Methanothermococcus okinawensis
           IH1]
 gi|302485181|gb|EFL48110.1| AAA family ATPase, CDC48 subfamily [Methanothermococcus okinawensis
           IH1]
          Length = 746

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 63/258 (24%), Positives = 98/258 (37%), Gaps = 30/258 (11%)

Query: 28  EEFTGQVEACSNLKVFIEA--------AKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           E+  G  E    ++  +E          K   E    VL  GPPG GKT LA+ VA E G
Sbjct: 193 EDIGGLREEVKKIREMVELPMRYPELFDKLGIEPPKGVLLAGPPGTGKTLLAKAVANEAG 252

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAMED 131
            NF + +GP I          +L  +    E+    ++FIDEI  ++   +E        
Sbjct: 253 ANFYTINGPEIMSKYVGETEENLRKIFEEAEEESPSIVFIDEIDAIAPKRDEASGEVERR 312

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
               L+            +  +  +IAAT R   L   L+   RF   I +   + +  K
Sbjct: 313 MVAQLLT-----LMDGLESRGQVVVIAATNRPDALDPALRRPGRFDREITIGVPDRKGRK 367

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            I+Q   +   LA  D     +A  + G        L       + A  KT+ R + D  
Sbjct: 368 EILQIHTRNMPLA-EDVDLDYLADVTHGFVGADLAAL------CKEAAMKTLRRLLPDID 420

Query: 250 LLRLAIDKMGFDQLDLRY 267
           L +  I K   D++++  
Sbjct: 421 LEKEEIPKEILDKIEVTM 438



 Score = 52.8 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 51/247 (20%), Positives = 81/247 (32%), Gaps = 23/247 (9%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARELG 79
           ++  G  E   +LK  +E      E            VL  GPPG GKT LA+ VA E  
Sbjct: 466 DDIGGLEEVKQDLKEAVEWPLKYKEVFEKMGIRPPKGVLLFGPPGTGKTLLAKAVANESQ 525

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAMED 131
            NF S  GP I           +  +          V+F DEI  ++      +      
Sbjct: 526 ANFISVKGPEIFSKWVGESEKAIREIFRKARQAAPTVVFFDEIDSIAPRRGSDIG---GS 582

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
              + +V +  +            +IAAT R  +L   L    R    + +   + +   
Sbjct: 583 GVAEKVVNQLLTELDGLEEPKDVVIIAATNRPDILDPALLRPGRLDRIVLVPVPDKKARY 642

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA--EVAHAKTITREIAD 247
            I++   K   LA   +           T      + R     A  E   A+ +     +
Sbjct: 643 EILKVHTKKMPLAEDVDLKKLAEKTEGYTGADLEAVCREAAMIALRENLKAEKVELRHFE 702

Query: 248 AALLRLA 254
            AL ++ 
Sbjct: 703 EALKKVR 709


>gi|302770437|ref|XP_002968637.1| hypothetical protein SELMODRAFT_145748 [Selaginella moellendorffii]
 gi|300163142|gb|EFJ29753.1| hypothetical protein SELMODRAFT_145748 [Selaginella moellendorffii]
          Length = 809

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 46/256 (17%), Positives = 85/256 (33%), Gaps = 20/256 (7%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVARE 77
           + E+  G       L+  ++      E            VLF GPPG GKT LA+ +A E
Sbjct: 485 SWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANE 544

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
              NF S  GP +          ++  +          VLF DE+  ++      +  A 
Sbjct: 545 CQANFISVKGPELLTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIATQRGSSVGDA- 603

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                D ++ +  +            +I AT R  ++   L    R    I +   +   
Sbjct: 604 -GGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEAS 662

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
              I Q   + + L+   +           +      + +R   +A   + +    +   
Sbjct: 663 RLKIFQAALRKSPLSKDVDLEALGRYTQGFSGADITEICQRACKYAIRENIEQDIEKERR 722

Query: 248 AALLRLAIDKMGFDQL 263
            A    A+D+   D++
Sbjct: 723 RADNPEAMDEDEVDEI 738



 Score = 53.9 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 40/172 (23%), Positives = 63/172 (36%), Gaps = 29/172 (16%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------------VLFVGPPGLGKTTLA 71
            L+E  G  +     K   +  +     L H              +L  GPPG GKT +A
Sbjct: 207 RLDE-VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIA 265

Query: 72  QVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEE 123
           + VA E G  F   +GP I          +L       E     ++FIDEI  ++   E+
Sbjct: 266 RAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREK 325

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
                 +      +V +  +      + S   ++ AT R   +   L+ RFG
Sbjct: 326 -----TQGEVERRIVSQLLTLMDGLKSRSHVIVMGATNRPNSIDPALR-RFG 371


>gi|296454756|ref|YP_003661899.1| ATP-dependent metalloprotease FtsH [Bifidobacterium longum subsp.
           longum JDM301]
 gi|296184187|gb|ADH01069.1| ATP-dependent metalloprotease FtsH [Bifidobacterium longum subsp.
           longum JDM301]
          Length = 697

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 49/208 (23%), Positives = 77/208 (37%), Gaps = 12/208 (5%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108
           VL  GPPG GKT LA+ +A E GV F S +G       V   A  +  L    +     +
Sbjct: 253 VLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEMFVGLGASRVRDLFDEAKKNAPAI 312

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +FIDEI  +       +    ++ +  L   +         N +   +IAAT R  +L  
Sbjct: 313 IFIDEIDAVGRKRGSGMGGGHDEREQTL--NQLLVEMDGFDNDTNLIIIAATNRPDVLDP 370

Query: 169 PLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
            L    RF   + +   ++E  + I++  AK        +           T      +L
Sbjct: 371 ALLRPGRFDRQVGVAAPDLEGREAILRVHAKGKPFVPDVDLHMVAVRTPGFTGADLANVL 430

Query: 227 RRVRDFAEVAHAKTITREIADAALLRLA 254
                    A A+ I     D A+ R+ 
Sbjct: 431 NEAALLCARAGAQLIDNRAIDEAIDRVQ 458


>gi|259417972|ref|ZP_05741891.1| cell division protease FtsH [Silicibacter sp. TrichCH4B]
 gi|259346878|gb|EEW58692.1| cell division protease FtsH [Silicibacter sp. TrichCH4B]
          Length = 637

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 54/251 (21%), Positives = 92/251 (36%), Gaps = 27/251 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  EA   L+  +E        ++   +     L VGPPG GKT LA+ +A E 
Sbjct: 152 TFDDVAGIDEAKEELEEIVEFLRNPQKFSRLGGKIPKGALLVGPPGTGKTLLARAIAGEA 211

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F + SG       V   A  +  +    +     ++FIDEI  +            +
Sbjct: 212 GVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKNAPCIVFIDEIDAVGRHRGAGYGGGND 271

Query: 131 DFQLD----LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
           + +      L+  +G  A    I L      AAT R  +L   L    RF   + +   +
Sbjct: 272 EREQTLNQLLVEMDGFEANEGVIIL------AATNRKDVLDPALLRPGRFDRNVTVGNPD 325

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           I+  + I+   A+ T L    +           +      L+      A     + +T E
Sbjct: 326 IKGREKILGVHARKTPLGADVDLRIIARGTPGFSGADLANLVNEAALMAARVGRRFVTME 385

Query: 245 IADAALLRLAI 255
             + A  ++ +
Sbjct: 386 DFENAKDKVMM 396


>gi|224283825|ref|ZP_03647147.1| ATP-dependent zinc metallopeptidase involved in cell division
           [Bifidobacterium bifidum NCIMB 41171]
 gi|313140979|ref|ZP_07803172.1| ATP-dependent zinc metallopeptidase [Bifidobacterium bifidum NCIMB
           41171]
 gi|313133489|gb|EFR51106.1| ATP-dependent zinc metallopeptidase [Bifidobacterium bifidum NCIMB
           41171]
          Length = 697

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 49/210 (23%), Positives = 79/210 (37%), Gaps = 16/210 (7%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108
           VL  GPPG GKT LA+ +A E GV F + +G       V   A  +  L    +     +
Sbjct: 252 VLLYGPPGTGKTLLARAIAGEAGVPFYAMAGSDFVEMFVGLGASRVRDLFDEAKKNAPAI 311

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLL 166
           +FIDEI  +       +    ++ +  L  ++ E     S    +    +IAAT R  +L
Sbjct: 312 IFIDEIDAVGRKRGSGMSGGHDEREQTLNQLLVEMDGFDSDTNLI----IIAATNRPDVL 367

Query: 167 TNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGR 224
              L    RF   + +   ++E  + I++  AK        +           T      
Sbjct: 368 DPALLRPGRFDRQVSVEAPDLEGREAILKVHAKGKPFVPDVDLHMVAVRTPGFTGADLAN 427

Query: 225 LLRRVRDFAEVAHAKTITREIADAALLRLA 254
           +L         A A+ I     D A+ R+ 
Sbjct: 428 VLNEAALLCARAGAQLIDNRAIDEAIDRVQ 457


>gi|212634550|ref|YP_002311075.1| DNA-directed DNA polymerase [Shewanella piezotolerans WP3]
 gi|212556034|gb|ACJ28488.1| DNA-directed DNA polymerase [Shewanella piezotolerans WP3]
          Length = 946

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 52/259 (20%), Positives = 77/259 (29%), Gaps = 59/259 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP   E+  GQ      L   +       + L H  LF G  G+GKT+LA++ A+ L   
Sbjct: 11  RPAKFEQMVGQSHVLHALTNALT-----QQRLHHAYLFSGTRGVGKTSLARLFAKGLNCE 65

Query: 82  ------------------------FRSTSGPVIAKAGDLAALLTNLEDRD------VLFI 111
                                             K  D   LL N++ R       V  I
Sbjct: 66  QGVTATPCGQCSACVEIAEGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRYKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                         + ATT    L   + 
Sbjct: 126 DEVHMLSRSSFNALLKTLEE------------------PPEHVKFLLATTDPQRLPVTVL 167

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R  +   L     +++   +        L     A   +A  + G+ R A  L     D
Sbjct: 168 SRC-LQFNLKSLTQDEISDQLTNVLTAESLEFEATALTLLAKAANGSMRDALSL----TD 222

Query: 232 FAEVAHAKTITREIADAAL 250
            A    A  +  E+    L
Sbjct: 223 QAIAFGAGQVKLELVQTML 241


>gi|148554068|ref|YP_001261650.1| ATP-dependent protease La [Sphingomonas wittichii RW1]
 gi|148499258|gb|ABQ67512.1| ATP-dependent protease La [Sphingomonas wittichii RW1]
          Length = 801

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/164 (24%), Positives = 64/164 (39%), Gaps = 32/164 (19%)

Query: 55  DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA---------------AL 99
             + F GPPG+GKT+L Q +A+ +G  F   S   +    ++                  
Sbjct: 370 PILCFAGPPGVGKTSLGQSIAKAMGREFVRVSLGGVHDEAEIRGHRRTYIGALPGNIIQA 429

Query: 100 LTNLEDRD-VLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKIN 150
           +     RD V+ +DEI +L   ++        E+L P       D  +G       V  +
Sbjct: 430 IRKAGTRDCVMMLDEIDKLGRGIQGDPSAAMLEVLDPEQNGTFRDNYLG-------VPFD 482

Query: 151 LSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           LSR   IA    +  +  PL+DR  +      Y  E+   I +R
Sbjct: 483 LSRVLFIATANMLDTIPGPLRDRMEVISLPG-YTEEEKLHIARR 525


>gi|38234566|ref|NP_940333.1| cell division protein [Corynebacterium diphtheriae NCTC 13129]
 gi|38200829|emb|CAE50533.1| Cell division protein [Corynebacterium diphtheriae]
          Length = 824

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 59/245 (24%), Positives = 89/245 (36%), Gaps = 21/245 (8%)

Query: 26  TLEEFTGQVEACSNL---KVFIEAAKARAEALD-----HVLFVGPPGLGKTTLAQVVARE 77
           T  +  G  EA   L   K F+E    R EAL       VL  GPPG GKT LA+ VA E
Sbjct: 168 TFADVAGADEAIDELHEIKDFLE-DPTRYEALGAKIPRGVLLYGPPGTGKTLLARAVAGE 226

Query: 78  LGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
            GV F S SG       V   A  +  L     +    ++FIDEI  +       +    
Sbjct: 227 AGVPFYSISGSDFVEMFVGVGASRVRDLFKQARENSPCIIFIDEIDAVGRQRGSGMGGGH 286

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
           ++ +  L   +         +     ++AAT R  +L   L    RF   I +   +++ 
Sbjct: 287 DEREQTL--NQMLVEMDGFGDREGVIIMAATNRPDILDPALLRPGRFDRQIPVTNPDLKG 344

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            + I++  AK    A   +        +  +      +L              IT +  +
Sbjct: 345 REQILRVHAKGKPFAKDADITALARRTAGMSGADLANVLNEAALLTARIGGNVITADALE 404

Query: 248 AALLR 252
            A  R
Sbjct: 405 EATDR 409


>gi|159903447|ref|YP_001550791.1| cell division protein FtsH4 [Prochlorococcus marinus str. MIT 9211]
 gi|159888623|gb|ABX08837.1| cell division protein FtsH4 [Prochlorococcus marinus str. MIT 9211]
          Length = 577

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 57/252 (22%), Positives = 96/252 (38%), Gaps = 24/252 (9%)

Query: 24  PRT-LEEFTGQVEACSNLK---VFIEA----AKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           P T  ++  G  EA  ++K    F+++    +K  A+     L +GPPG GKT LA+ +A
Sbjct: 118 PTTKFDDVAGISEALEDIKEIVTFLKSPQVFSKMGAKIPKGFLLIGPPGTGKTLLARAIA 177

Query: 76  RELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYP 127
            E  V F S S            A  +  L     ++   ++FIDEI  +       +  
Sbjct: 178 GEANVPFFSISASEFVELFVGVGASRVRQLFKKALEKSPSIIFIDEIDAIGRKRGSGIGG 237

Query: 128 AMEDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183
             ++ +  L  ++ E           S   +IAAT R  +L N L    RF   I +   
Sbjct: 238 GNDEREQTLNQLLTEIDGF----AENSGVIVIAATNRPDVLDNALIRPGRFDRKIEIGLP 293

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           + +    I+   A+   L+            S  +      LL      A  ++   I+ 
Sbjct: 294 DRKGRLEILSVHARTKPLSEDVSLNAIALNTSGFSGADLSNLLNESAIIAARSNKTKISN 353

Query: 244 EIADAALLRLAI 255
              + AL +L +
Sbjct: 354 IELNQALDKLTM 365


>gi|326432763|gb|EGD78333.1| hypothetical protein PTSG_09399 [Salpingoeca sp. ATCC 50818]
          Length = 864

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 55/232 (23%), Positives = 83/232 (35%), Gaps = 28/232 (12%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKARAEALDHV--------LFVGPPGLGKTTLAQVVAR 76
            TLE+  G     S ++  ++A    A    H+        L  GPPG GKT LA  +A 
Sbjct: 159 TTLEDLGGLDHTISVVRSTMDATFRGAYMFKHLGFEPPKGLLLHGPPGCGKTLLASAIAG 218

Query: 77  ELGVNFRSTSGPVIAK---------AGDLAALLTNLEDRD----VLFIDEIHRLSIIVEE 123
           E  V F   S P +             DL      +  RD    ++F+DEI  ++   E 
Sbjct: 219 EWEVPFIKVSAPELIGGTSGDSEQFIRDLFEQAIAIAQRDKRGCIVFLDEIDTITSKREN 278

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLN 181
                       LM      +       S   +I ATTR   L   ++   RF   + L+
Sbjct: 279 AQREMERRIVAQLMTTMDNLSLENTGG-SPVLVIGATTRPDALDPAIRRTGRFDTEVALS 337

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
             +I+    I+   A +      D      A  ++ TP   G  L  + + A
Sbjct: 338 VPDIDARAHIL---AVICRNKRIDAGVD-FANLAKRTPGFVGADLMSLANQA 385



 Score = 49.3 bits (116), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 82/227 (36%), Gaps = 15/227 (6%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD--- 107
               VL  GPPG GKT LA+ +A     NF S  GP +     G+    +  L  R    
Sbjct: 605 KPPGVLLYGPPGCGKTLLAKALANSCNANFISIKGPELMNKFVGESERAVRQLFTRAKTS 664

Query: 108 ---VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164
              V+F DE+  L     +     + +  ++ ++ E     S +    +  +I AT R+ 
Sbjct: 665 SPCVVFFDELDALCPRRGDASSSRVSERIVNQLLVELDGFDSGE---EKIFVIGATNRID 721

Query: 165 LLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAK--LTGLAVTDEAACEIAMRSRGTPR 220
           ++   +    R    + ++  +      I +  A+       V   A    +   + T  
Sbjct: 722 IIDPAMLRPGRLEKLVYVDLPDQHARAEIFKTQARNISLAPDVDLTAVAADSRCQQYTGA 781

Query: 221 IAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRY 267
            +  LLR   + A     +   ++    A +R AI     +    + 
Sbjct: 782 DSAALLREAGNAAIWRLLQENNQDFDKTAAMRPAISTADLEVAMRKV 828


>gi|311108171|ref|YP_003981024.1| DNA polymerase III subunits gamma and tau [Achromobacter
           xylosoxidans A8]
 gi|310762860|gb|ADP18309.1| DNA polymerase III, subunits gamma and tau [Achromobacter
           xylosoxidans A8]
          Length = 728

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 85/245 (34%), Gaps = 31/245 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPR+ +   GQ      L   ++  +     L H  LF G  G+GKTTL++++A+ L   
Sbjct: 11  RPRSFDTLVGQDHVVRALTHALDTQR-----LHHAWLFTGTRGVGKTTLSRILAKSLNCE 65

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAMEDFQL 134
              TS P     G   A       R V +++        +  ++ ++E+ +Y        
Sbjct: 66  TGITSKP----CGVCRACTEIDSGRFVDYLELDAASNRGVEEMTQLLEQAVYAPGAGRFK 121

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             M+ E             ++++        I ATT    +   +  R  +   L     
Sbjct: 122 VYMIDEVHMLTGHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPA 180

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           + +   +Q       +     A   I   + G+ R A  L     D A    A  +T + 
Sbjct: 181 DSIVGHLQAVLGQEDVGFEVPALRLIGQAASGSMRDALSL----TDQAIAYSAGNLTEDA 236

Query: 246 ADAAL 250
               L
Sbjct: 237 VRGML 241


>gi|301613044|ref|XP_002936030.1| PREDICTED: ATPase family AAA domain-containing protein 2B-like
           [Xenopus (Silurana) tropicalis]
          Length = 1507

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/186 (23%), Positives = 74/186 (39%), Gaps = 26/186 (13%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTS------GPVIAK-AGDLAALL 100
           K R +     LF GPPG GKT +A+ +A E     +  S         ++K  G+    L
Sbjct: 553 KFRIQPPRGCLFYGPPGTGKTLVARALANECSQGDKKVSFFMRKGADCLSKWVGESERQL 612

Query: 101 TNLEDR------DVLFIDEIHRLSII---VEEILYPAMEDFQLDLMVGEGPSARSVKINL 151
             L D+       ++F DEI  L+ +    ++ ++ ++    L LM G       V I  
Sbjct: 613 RLLFDQAYVMRPSIIFFDEIDGLAPVRSSRQDQIHSSIVSTLLALMDGLDNRGEIVVI-- 670

Query: 152 SRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAAC 209
                  AT R+  +   L+   RF      +  + +  K I+Q   +     ++D    
Sbjct: 671 ------GATNRLDSIDPALRRPGRFDREFLFSLPDQKARKHILQIHTRDWNPKLSDSFLE 724

Query: 210 EIAMRS 215
           E+A + 
Sbjct: 725 ELAEKC 730


>gi|295696291|ref|YP_003589529.1| Vesicle-fusing ATPase [Bacillus tusciae DSM 2912]
 gi|295411893|gb|ADG06385.1| Vesicle-fusing ATPase [Bacillus tusciae DSM 2912]
          Length = 493

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 54/250 (21%), Positives = 92/250 (36%), Gaps = 40/250 (16%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE-------ALDHVLFVGPPGLGKTTLAQVVAREL 78
             +E  GQ  A   L   ++  + R +        L  +L  GPPG GKT +A+  A   
Sbjct: 59  NFDEIGGQEHAKRELMEALDFLRYRDKIRQLGIRPLKGILLTGPPGTGKTLMAKAAATYT 118

Query: 79  GVNFRSTSGPVI---------AKAGDL-----AALLTNLEDRDVLFIDEIH-----RLSI 119
             +F S SG             +  DL      +     +D  ++FIDEI      R + 
Sbjct: 119 DSSFVSASGSEFVEMYVGVGAQRVRDLFRRARQSARKEGKDSAIVFIDEIDVIGGRRGNH 178

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIP 177
             +E  Y    +  L  M G   +A           ++AAT RV +L   L    RF   
Sbjct: 179 SHQE--YDQTLNQLLTEMDGMQTTAH------PLVLVMAATNRVDILDPALLRPGRFDRI 230

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
           I+++  + E    I+    ++         + ++   +R T   +G  L  + + A +  
Sbjct: 231 IKVDMPDKEGRLHIL----RIQTRNKPLAKSVDLEQVARETFGFSGAQLESLANEAAIMA 286

Query: 238 AKTITREIAD 247
            +    E+  
Sbjct: 287 LREGQDEVEQ 296


>gi|254779303|ref|YP_003057408.1| DNA polymerase III subunits gamma and tau [Helicobacter pylori B38]
 gi|254001214|emb|CAX29182.1| DNA polymerase III gamma and tau subunits (DnaX) [Helicobacter
           pylori B38]
          Length = 570

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 78/256 (30%), Gaps = 59/256 (23%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA------- 75
           RP+   E  GQ      L + ++  +         LF G  G GKT+ +++ A       
Sbjct: 9   RPKHFSELVGQESVAKTLSLALDNQRLANAY----LFSGLRGSGKTSSSRIFARALMCEE 64

Query: 76  -----------------RELGVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFID 112
                                ++     G       D+  L+             +  ID
Sbjct: 65  GPKAVPCDTCTQCQSALNNHHIDIIEMDGASNRGIDDVRNLIEQTRYKPSFGRYKIFIID 124

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H  +      L   +E+                    S    + ATT    L   +  
Sbjct: 125 EVHMFTTEAFNALLKTLEE------------------PPSHVKFLLATTDALKLPATILS 166

Query: 173 R---FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           R   F          I  LKTI++       ++    A  ++A   +G+ R    LL + 
Sbjct: 167 RTQHFRFKKIPENSVISHLKTILE----KEQVSYESSALEKLAHSGQGSLRDTITLLEQA 222

Query: 230 RDFAEVAHAKTITREI 245
            ++ + A  ++   E+
Sbjct: 223 INYCDNAITESKVAEM 238


>gi|256073899|ref|XP_002573265.1| cell division control protein 48 aaa family protein  [Schistosoma
           mansoni]
 gi|238658441|emb|CAZ29497.1| cell division control protein 48 aaa family protein (transitional
           endoplasmic reticulum atpase), putative [Schistosoma
           mansoni]
          Length = 803

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/243 (18%), Positives = 77/243 (31%), Gaps = 23/243 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVARE 77
           T ++  G       L+  ++      +            VLF GPPG GKT LA+ +A E
Sbjct: 472 TWDDIGGLENVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 531

Query: 78  LGVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
              NF S  GP +         A   D+           VLF DE+  ++      +  A
Sbjct: 532 CQANFISIKGPELLTMWFGESEANVRDIFDKARQAAP-CVLFFDELDSIAKARGGSVGDA 590

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
                 D ++ +  +            +I AT R  ++   +    R    I +   +  
Sbjct: 591 --GGAADRVINQLLTEMDGMSAKKNVFIIGATNRPDIIDGAILRPGRLDQLIYIPLPDEA 648

Query: 187 DLKTIVQRGAKLTGLAVT-DEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
               I++   + + +A   D      A +      +     R  +     +    I  E 
Sbjct: 649 SRVNILKANLRKSPIARDVDINFLAKATQGFSGADLTEICQRACKQAIRESIEAEIRAES 708

Query: 246 ADA 248
              
Sbjct: 709 EKK 711



 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 52/266 (19%), Positives = 93/266 (34%), Gaps = 44/266 (16%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARA--------EALDHVLFVGPPGLGKTTLAQVVARELG 79
           ++  G  +  + +K  +E              +    +L  GPPG GKT +A+ VA E G
Sbjct: 201 DDIGGCRKQLAQIKEMVELPLRHPQLFKAIGVKPPRGILLYGPPGTGKTLVARAVANESG 260

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAMED 131
             F   +GP I          +L       E     ++FIDE+  ++   E+        
Sbjct: 261 SFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK-----THG 315

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
                +V +  +        S   ++AAT R   +   L+ RFG       ++ E    I
Sbjct: 316 EVERRIVSQLLTLMDGLKQRSHVIVMAATNRPNSVDPALR-RFGR------FDREIEIGI 368

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL-LRRVRDFAEVAHAKTITREIADAAL 250
                             EI        R+A  + L ++ + A       +    ++AAL
Sbjct: 369 P-----------DSIGRLEILRIHTRNIRLAEDVELEKIANEAHGHVGADLASLCSEAAL 417

Query: 251 LR----LAIDKMGFDQLDLRYLTMIA 272
            +    + +  +  D +D   L  +A
Sbjct: 418 QQIRNKMNLIDLEDDTIDAEVLNSLA 443


>gi|226324935|ref|ZP_03800453.1| hypothetical protein COPCOM_02727 [Coprococcus comes ATCC 27758]
 gi|225206283|gb|EEG88637.1| hypothetical protein COPCOM_02727 [Coprococcus comes ATCC 27758]
          Length = 587

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/197 (23%), Positives = 76/197 (38%), Gaps = 22/197 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78
              +  G+ EA  NL   ++      +  D        VL VGPPG GKT LA+ VA E 
Sbjct: 146 RFSDVAGEDEAKENLSEIVDYLHNPKKYTDVGASMPKGVLLVGPPGTGKTMLAKAVAGES 205

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG           A  +  L    +++   ++FIDEI  +    +  +    E
Sbjct: 206 NVPFFSMSGSEFVEMFVGMGASKVRDLFKQAKEKAPCIVFIDEIDAIGKKRDGQMGGNDE 265

Query: 131 -DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            +  L+ ++ E               ++AAT R   L   L    RF   + +   ++  
Sbjct: 266 REQTLNQLLTEMDGFEGNNG----VIILAATNRPESLDPALTRPGRFDRRVPVELPDLAG 321

Query: 188 LKTIVQRGAKLTGLAVT 204
            + I++  AK    +  
Sbjct: 322 REAILKVHAKKIKASDD 338


>gi|194400005|gb|ACF60961.1| neuronal spastin [Gallus gallus]
          Length = 489

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 83/224 (37%), Gaps = 22/224 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDHV-------LFVGPPGLGKTTLAQVVAREL 78
             ++  GQ  A   L+  +     R E    +       L  GPPG GKT LA+ VA E 
Sbjct: 213 KFDDIAGQELAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES 272

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAME 130
              F + S   +           + AL     +    ++FIDE+  L     E  + A  
Sbjct: 273 NATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLCERREGEHDASR 332

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
             + + ++       S +    R  ++ AT R   L + +  RF   + ++    E    
Sbjct: 333 RLKTEFLIEFDGVQSSGE---DRILVMGATNRPQELDDAVLRRFTKRVYVSLPNEETRLI 389

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR-VRDFA 233
           +++    L     +     E+A  +R T   +G  L   V+D A
Sbjct: 390 LLK---NLLSKQGSPLTQKELAQLARMTDGYSGSDLTASVKDAA 430


>gi|162449167|ref|YP_001611534.1| ATP-dependent protease La [Sorangium cellulosum 'So ce 56']
 gi|302425097|sp|A9ETZ9|LON1_SORC5 RecName: Full=Lon protease 1; AltName: Full=ATP-dependent protease
           La 1
 gi|161159749|emb|CAN91054.1| ATP-dependent protease La [Sorangium cellulosum 'So ce 56']
          Length = 811

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/188 (22%), Positives = 67/188 (35%), Gaps = 34/188 (18%)

Query: 55  DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL----------- 103
             +LF+GPPG GKT++A+ +AR LG  +   S        D+                  
Sbjct: 370 PILLFLGPPGTGKTSIAESIARALGRKYVRVSLGGARDEADIRGHRRTYVGAMPGRILQG 429

Query: 104 -----EDRDVLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKIN 150
                    V+ +DE+ +L    +        E+L PA  D  +D  +G       +  +
Sbjct: 430 IKRIGSKNPVIVLDEVDKLGASYQGDPGAALLEVLDPAQNDGFVDHYLG-------LPFD 482

Query: 151 LSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACE 210
           LS    I        +  PL DR   P     Y  ++   I ++   L      +    E
Sbjct: 483 LSEVLFICTANFRETIPPPLFDRME-PALFAGYTEQEKHEIARKY--LLPRQRKECGLRE 539

Query: 211 IAMRSRGT 218
             +R  GT
Sbjct: 540 EQLRVTGT 547


>gi|91788713|ref|YP_549665.1| membrane protease FtsH catalytic subunit [Polaromonas sp. JS666]
 gi|91697938|gb|ABE44767.1| membrane protease FtsH catalytic subunit [Polaromonas sp. JS666]
          Length = 640

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 54/248 (21%), Positives = 89/248 (35%), Gaps = 23/248 (9%)

Query: 24  PRTLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           P T  +  G  EA   +K  +       +  K        +L VGPPG GKT LA+ +A 
Sbjct: 157 PVTFADVAGCDEAKEEVKEVVDFLKDPQKFQKLGGRIPRGLLLVGPPGTGKTLLAKGIAG 216

Query: 77  ELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPA 128
           E  V F S SG       V   A  +  +  N +     ++FIDEI  +       L   
Sbjct: 217 EAKVPFFSISGSDFVEMFVGVGAARVRDMFENAKKNAPCIIFIDEIDAVGRQRGAGLGGG 276

Query: 129 MEDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
            ++ +  L  M+ E     +         ++AAT R  +L   L    RF   + +   +
Sbjct: 277 NDEREQTLNQMLVEMDGFETNVG----VIVVAATNRPDILDAALLRPGRFDRQVYVTLPD 332

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           I   + I+    +   L     A+         +      L       A   +A+T+  +
Sbjct: 333 IRGREQILNVHMRKVPLGQDVNASVIARGTPGMSGADLANLCNEAALMAARRNARTVEMQ 392

Query: 245 IADAALLR 252
             + A  +
Sbjct: 393 DFEKAKDK 400


>gi|76802726|ref|YP_330821.1| AAA-type ATPase (transitional ATPase homolog) [Natronomonas
           pharaonis DSM 2160]
 gi|76558591|emb|CAI50183.1| AAA-type ATPase (transitional ATPase homolog) [Natronomonas
           pharaonis DSM 2160]
          Length = 702

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 67/301 (22%), Positives = 98/301 (32%), Gaps = 52/301 (17%)

Query: 26  TLEEFTGQVEACSNLKVFIEAA--------KARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           T E+  G  E    ++  IE          K   E    VL  GPPG GKT +A+ VA E
Sbjct: 187 TYEDIGGLDEELEQVREMIELPLSEPELFRKLGIEPPSGVLLYGPPGTGKTLIAKAVANE 246

Query: 78  LGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAM 129
           +  +F    GP I     G+    L    +R       V+FIDEI  ++   +E      
Sbjct: 247 VDAHFEVIDGPEIVSKYKGESEERLRETFERAVDNQPAVVFIDEIDSIAGTRDEDADMEN 306

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                 L + +G           R  +I AT RV  +   L+   RF   I +   +   
Sbjct: 307 RVVAQLLTLMDGLENH------GRLIVIGATNRVDAIDPALRRGGRFDREIEIGAPDEGG 360

Query: 188 LKTIV---QR---------------------GAKLTGLAVTDEAACEIAMRSRGTPRIAG 223
            + I+    R                     GA +  LA         +   RG  R+  
Sbjct: 361 RREILDVHTRGMPLSEDVDIDYLAARTHGFVGADIHSLATEAAMEALRSRDERGELRVTA 420

Query: 224 RLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIE 283
                     + +  +    E  +AA      D  G D    R    +      GP+  E
Sbjct: 421 GDFEAALTATDPSAMREYVAETPEAAFE----DVGGLDAAKQRLTEAVEWPLSYGPLFEE 476

Query: 284 T 284
           T
Sbjct: 477 T 477



 Score = 46.6 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 86/228 (37%), Gaps = 22/228 (9%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR--- 106
           +    +L  GPPG GKT LA+ +A E  VNF S +GP +     G+    +  + DR   
Sbjct: 480 DPPTGILLYGPPGTGKTLLARALAGESDVNFVSVAGPELLDKYVGESEKAVREVFDRARQ 539

Query: 107 ---DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
               ++F DEI  L+ +  +    A E     L+      A     +     ++AAT R 
Sbjct: 540 AAPAIVFFDEIDALAGVRGDAS-EATERVVSQLLAELDGLA-----DNPNMVVLAATNRK 593

Query: 164 GLLTNPLQDRFGIPIRLNFYEI-----EDLKTIVQRGAKLTGLAVTDEAACEIAMRS--R 216
             L   L     +   +   +      +++  +  RG  L      DE A E A RS   
Sbjct: 594 AALDPALLRPGRLETHVEVPDPGETARKEILDVHTRGKPLGEDVDLDEVAAETAGRSGAE 653

Query: 217 GTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLD 264
               +    +R +R+ A          + AD   +     +   D ++
Sbjct: 654 LEAVVRDASMRAIRELATELG-PEAAADRADEVTIERRHFEAALDAIE 700


>gi|327350812|gb|EGE79669.1| ribosome biogenesis ATPase RIX7 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 725

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 51/213 (23%), Positives = 81/213 (38%), Gaps = 15/213 (7%)

Query: 47  AKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLE 104
           A+    A   VL  GPPG GKT LA+ VA E   NF S  GP +     G+    +  + 
Sbjct: 491 ARVGITAPTGVLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESERAVRQVF 550

Query: 105 DRD------VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIA 158
            R       V+F DE+  L    ++ L  A       L+        + +       +IA
Sbjct: 551 VRARSSVPCVIFFDELDALVPRRDDTLSEASARVVNTLLTELDGLGSARQG----IYVIA 606

Query: 159 ATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSR 216
           AT R  ++   +    R    + +N    ++   I+Q   +   +  +D+          
Sbjct: 607 ATNRPDIIDPAMLRPGRLETLLFVNLPTADERVEILQTLLRKMPIEFSDDIKELARSCEG 666

Query: 217 GTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            +    G LLRR   ++ +    TI  E   AA
Sbjct: 667 FSGADLGSLLRRA-GYSAIKRRDTIRFEDFVAA 698



 Score = 43.9 bits (102), Expect = 0.030,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 42/113 (37%), Gaps = 16/113 (14%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
            L +  G  +    L+  I     R +            VL  GPPG GKT +A   A E
Sbjct: 175 NLADLGGVDDVIQELEDLIVLPMTRPQVYSSSKVQPPRGVLLHGPPGCGKTMIANAFAAE 234

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVE 122
           LGV F + S P I           L       +     ++FIDEI  ++   E
Sbjct: 235 LGVPFIAISAPSIVSGMSGESEKALREHFDEAKKVAPCLIFIDEIDAITPKRE 287


>gi|145296692|ref|YP_001139513.1| hypothetical protein cgR_2597 [Corynebacterium glutamicum R]
 gi|140846612|dbj|BAF55611.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 853

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 59/245 (24%), Positives = 90/245 (36%), Gaps = 21/245 (8%)

Query: 26  TLEEFTGQVEACSNL---KVFIEAAKARAEALD-----HVLFVGPPGLGKTTLAQVVARE 77
           T  +  G  EA   L   K F+E    R EAL       VL  GPPG GKT LA+ VA E
Sbjct: 163 TFADVAGAEEAVDELHEIKDFLE-DPTRYEALGAKIPRGVLLYGPPGTGKTLLARAVAGE 221

Query: 78  LGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
            GV F S SG       V   A  +  L    ++    ++F+DEI  +       +    
Sbjct: 222 AGVPFYSISGSDFVEMFVGVGASRVRDLFKQAKENSPCIIFVDEIDAVGRARGSGMGGGH 281

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
           ++ +  L   +         +     L+AAT R  +L   L    RF   I +   ++  
Sbjct: 282 DEREQTL--NQLLVEMDGFGDRQGVILMAATNRPDVLDPALLRPGRFDRQIPVTNPDLRG 339

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            + I++  AK    A+  +        +  +      +L              IT +  +
Sbjct: 340 REQILEVHAKGKPFALDADIKALAKRTAGMSGADLANVLNEAALLTARVGGNVITADALE 399

Query: 248 AALLR 252
            A  R
Sbjct: 400 EATDR 404


>gi|329929828|ref|ZP_08283504.1| ATP-dependent metallopeptidase HflB [Paenibacillus sp. HGF5]
 gi|328935806|gb|EGG32267.1| ATP-dependent metallopeptidase HflB [Paenibacillus sp. HGF5]
          Length = 500

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 50/259 (19%), Positives = 89/259 (34%), Gaps = 32/259 (12%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE-------ALDHVLFVGPPGLGKTTLAQVVAREL 78
           T EE  GQ  A   L+  ++      +        L  +L  GPPG GKT +A+  A   
Sbjct: 69  TFEEIGGQDNAKQELREALDFLIRHEDIKKFGIRPLKGILLTGPPGTGKTLMAKAAAHYT 128

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDR--------DVLFIDEIHRLSIIV--- 121
              F + SG           AG +  L  +  +R         ++FIDEI  +       
Sbjct: 129 DSIFVAASGSEFVEMYVGVGAGRIRDLFKDARNRAAKENKQNAIIFIDEIDVIGGKREGG 188

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIR 179
           ++  Y    +  L  M G             R  +IAAT R  +L + L    RF   I+
Sbjct: 189 QQREYDQTLNQLLTEMDG------IYSQETPRILVIAATNRKEMLDSALLRPGRFDRHIQ 242

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           ++  + +    I+   A    L    +           +      ++     +    + +
Sbjct: 243 VDLPDKKGRTHILNLHAGNKPLHQDVDLEKIAEEAYGFSGAQLESVMNEAAIYTMRENEQ 302

Query: 240 TITREIADAALLRLAIDKM 258
            I +     A+ ++ + + 
Sbjct: 303 FIHQRHLSMAIDKVMMGER 321


>gi|323486012|ref|ZP_08091343.1| hypothetical protein HMPREF9474_03094 [Clostridium symbiosum
           WAL-14163]
 gi|323400579|gb|EGA92946.1| hypothetical protein HMPREF9474_03094 [Clostridium symbiosum
           WAL-14163]
          Length = 625

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 74/188 (39%), Gaps = 23/188 (12%)

Query: 25  RTLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +T  +  GQ EA   L+  +       + A+  A      L VGPPG GKT LA+ VA E
Sbjct: 167 KTFADVAGQDEAKEALQEIVDFLHNPQKYAEIGAILPKGALLVGPPGTGKTLLAKAVAGE 226

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
             V F S SG           A  +  L     ++   ++FIDEI  +    +       
Sbjct: 227 AHVPFFSISGSEFVEMFVGMGAAKVRDLFKQANEKAPCIVFIDEIDTIGKKRDGAGMGGN 286

Query: 130 EDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           ++ +  L  ++ E       K       ++AAT R   L   L    RF   I     ++
Sbjct: 287 DEREQTLNQLLTEMDGFDGRKG----VVILAATNRPESLDKALLRPGRFDRRIPAELPDL 342

Query: 186 EDLKTIVQ 193
           +  + I++
Sbjct: 343 KGREAILK 350


>gi|322699632|gb|EFY91392.1| cell division control protein Cdc48 [Metarhizium acridum CQMa 102]
          Length = 818

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 76/229 (33%), Gaps = 28/229 (12%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLED 105
           +    VL  GPPG GKT +A+ VA E G  F   +GP I          +L       E 
Sbjct: 251 KPPRGVLLYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEK 310

Query: 106 RD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
               ++FIDEI  ++   E+             +V +  +        S   ++AAT R 
Sbjct: 311 NSPAIIFIDEIDSIAPKREK-----TNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRP 365

Query: 164 GLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVT---DEAACEIAMRSRGT 218
             +   L+   RF   + +   +      I+Q   K   L      ++ A E        
Sbjct: 366 NSIDPALRRFGRFDREVDIGVPDPTGRLEILQIHTKNMKLGDDVDLEQIAAETHGYVGSD 425

Query: 219 PRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRY 267
                     V      A  + I  ++    L    ID    D L +  
Sbjct: 426 ----------VAALCSEAAMQQIREKMDLIDLDEDTIDAEVLDSLGVTM 464



 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 81/217 (37%), Gaps = 14/217 (6%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--V 108
           VLF GPPG GKT LA+ VA E   NF S  GP +          ++  +          +
Sbjct: 530 VLFYGPPGTGKTMLAKAVANECAANFISVKGPELLSMWFGESESNIRDIFDKARAAAPCI 589

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +F+DE+  ++      +  A      D +V +  +      +     +I AT R   L  
Sbjct: 590 VFLDELDSIAKARGGSVGDA--GGASDRVVNQLLTEMDGMTSKKNVFVIGATNRPEQLDP 647

Query: 169 PLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
            L    R    I +   +     +I++   + T +A   +     +  +  +    G + 
Sbjct: 648 ALCRPGRLDSLIYVPLPDEPGRLSILKAQLRKTPMASDIDLGFIASKTNGFSGADLGFIT 707

Query: 227 RRVRDFA--EVAHAKTITREIADAALLRLAIDKMGFD 261
           +R    A  E   A     +  +AA   + +D+   D
Sbjct: 708 QRAVKIAIKEAIAADIERTKAREAAGDEMDMDEDSED 744


>gi|302327390|gb|ADL26591.1| cell division protein FtsH [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 676

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 66/267 (24%), Positives = 105/267 (39%), Gaps = 30/267 (11%)

Query: 25  RTLEEFTGQVEACSNLKVFIE-------AAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
            T  +  G  EA  +L+  +E         K         L VGPPG GKT LA+ VA E
Sbjct: 167 TTFNDVAGCDEAKQDLQELVEFLKDPKKYDKLGGRIPKGALLVGPPGTGKTLLARAVAGE 226

Query: 78  LGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
            GV F S SG       V   A  +  L    +     +LFIDEI  +       L    
Sbjct: 227 AGVPFFSMSGSDFVEMFVGVGASRVRDLFETGKKNAPCILFIDEIDAVGRQRGAGLGGGH 286

Query: 130 EDFQLD----LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183
           ++ +      L+  +G +A    I       IAAT R  +L   L    RF   I +   
Sbjct: 287 DEREQTLNQLLVEMDGFTANEGVIL------IAATNRPDVLDKALLRPGRFDRQIVVGLP 340

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           +++  + I++   K   + + D+   ++   ++GTP +AG  L  + + A +  A+   +
Sbjct: 341 DLKGREEILKVHLKKRKVPLGDD--VDVKAVAKGTPGLAGADLENLVNEAALLAARFNNK 398

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTM 270
           ++        A DK+         L  
Sbjct: 399 KVTMLDFEE-ARDKLSMGAERRTLLMT 424


>gi|261198899|ref|XP_002625851.1| ribosome biogenesis ATPase RIX7 [Ajellomyces dermatitidis SLH14081]
 gi|239595003|gb|EEQ77584.1| ribosome biogenesis ATPase RIX7 [Ajellomyces dermatitidis SLH14081]
          Length = 751

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 51/213 (23%), Positives = 81/213 (38%), Gaps = 15/213 (7%)

Query: 47  AKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLE 104
           A+    A   VL  GPPG GKT LA+ VA E   NF S  GP +     G+    +  + 
Sbjct: 517 ARVGITAPTGVLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESERAVRQVF 576

Query: 105 DRD------VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIA 158
            R       V+F DE+  L    ++ L  A       L+        + +       +IA
Sbjct: 577 VRARSSVPCVIFFDELDALVPRRDDTLSEASARVVNTLLTELDGLGSARQG----IYVIA 632

Query: 159 ATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSR 216
           AT R  ++   +    R    + +N    ++   I+Q   +   +  +D+          
Sbjct: 633 ATNRPDIIDPAMLRPGRLETLLFVNLPTADERVEILQTLLRKMPIEFSDDIKELARSCEG 692

Query: 217 GTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            +    G LLRR   ++ +    TI  E   AA
Sbjct: 693 FSGADLGSLLRRA-GYSAIKRRDTIRFEDFVAA 724



 Score = 53.2 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 57/279 (20%), Positives = 91/279 (32%), Gaps = 26/279 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
            L +  G  +    L+  I     R +            VL  GPPG GKT +A   A E
Sbjct: 175 NLADLGGVDDVIQELEDLIVLPMTRPQVYSSSKVQPPRGVLLHGPPGCGKTMIANAFAAE 234

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
           LGV F + S P I           L       +     ++FIDEI  ++    E     M
Sbjct: 235 LGVPFIAISAPSIVSGMSGESEKALREHFDEAKKVAPCLIFIDEIDAITPKR-ESAQREM 293

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
           E   +  ++         K +     ++AAT R   L   L+   RF   I L       
Sbjct: 294 EKRIVAQLLTCMDDLALEKTDGKPVIVLAATNRPDSLDAALRRGGRFDKEINLTVPSEPV 353

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA----KTITR 243
            + I+ R          D     +A R+ G        L      A +       K+ T 
Sbjct: 354 REQIL-RALTKDMNLADDLDFKLLAKRTPGFVGADLNDLVSTAGAAAIKRYIELLKSHTG 412

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTM--IARNFGGGPV 280
           +  +        D     ++  + L +  + ++    P+
Sbjct: 413 DEMEIENTANDADGDKSTKISPKILELRRLIKHARETPL 451


>gi|255558636|ref|XP_002520343.1| replication factor C / DNA polymerase III gamma-tau subunit,
           putative [Ricinus communis]
 gi|223540562|gb|EEF42129.1| replication factor C / DNA polymerase III gamma-tau subunit,
           putative [Ricinus communis]
          Length = 360

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 67/223 (30%), Gaps = 18/223 (8%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP++L +     +    +             L H+L  GPPG GKT+    VAR
Sbjct: 38  PWVEKYRPQSLADVAAHRDIVDTIDRL-----TNENRLPHLLLYGPPGTGKTSTILAVAR 92

Query: 77  -----ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED 131
                +        +         +   + +         D    + +++ +      +D
Sbjct: 93  KLYGVQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFDAKSAVKLVLLDEADAMTKD 152

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTI 191
            Q  L        R ++              V  +   LQ R     R    +   +   
Sbjct: 153 AQFAL-------RRVIEKYTKNTRFALICNHVNKIIPALQSRC-TRFRFAPLDPIHVTDR 204

Query: 192 VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
           ++   +  GL V +     +   S G  R A  +L+     ++
Sbjct: 205 LKHVIEAEGLDVPEPGLAAVVRLSNGDMRKALNILQSTHMASQ 247


>gi|124004176|ref|ZP_01689022.1| MoxR protein [Microscilla marina ATCC 23134]
 gi|123990246|gb|EAY29745.1| MoxR protein [Microscilla marina ATCC 23134]
          Length = 321

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/181 (22%), Positives = 69/181 (38%), Gaps = 28/181 (15%)

Query: 30  FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPV 89
             GQ E      + + A   +     H L VG PGL KT L Q +A  L +NF       
Sbjct: 29  IVGQEEVV---HLLLTAIFCQG----HCLLVGVPGLAKTLLIQTIASSLELNFNRIQFTP 81

Query: 90  IAKAGDLAALLTNLEDR-----------DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138
                D+    T  + R           +++  DEI+R     +  L  +M+++ + +  
Sbjct: 82  DLMPSDILGSETLDQQRNFQFVQGPIFSNIILADEINRTPPKTQAALLESMQEYSVTI-- 139

Query: 139 GEGPSARSVKINLSRFTLIAATTRVGLLTNPL----QDRFGIPIRLNFYEIEDLKTIVQR 194
               + +  +++   F L          T PL     DRF   I L++ + +    IV+R
Sbjct: 140 ----AGKRYQLDRPFFVLATQNPIEQEGTYPLPEAQLDRFMFNIFLDYPDYQAEVDIVKR 195

Query: 195 G 195
            
Sbjct: 196 T 196


>gi|326675180|ref|XP_003200296.1| PREDICTED: ATPase family AAA domain-containing protein 2, partial
           [Danio rerio]
          Length = 1335

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 54/275 (19%), Positives = 101/275 (36%), Gaps = 37/275 (13%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVN------FRSTSGPVIAK-AGDLAALL 100
           K + +     LF GPPG GKT +A+ +A E          F       ++K  G+    L
Sbjct: 409 KFKIQPPRGCLFYGPPGTGKTLVARALANECSQGERKVAFFMRKGADCLSKWVGESERQL 468

Query: 101 TNLEDR------DVLFIDEIHRLSII---VEEILYPAMEDFQLDLMVGEGPSARSVKINL 151
             L D+       ++F DEI  ++ +    ++ ++ ++    L LM G       V I  
Sbjct: 469 RLLFDQAYQMRPSIIFFDEIDGIAPVRSSRQDQIHSSIVSTLLALMDGLDSRGEVVVI-- 526

Query: 152 SRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAAC 209
                  AT R+  +   L+   RF      N  + E  K I++   +     ++D    
Sbjct: 527 ------GATNRLDSIDPALRRPGRFDREFLFNLPDREARKDILKIHTRHWDPQLSDAFLE 580

Query: 210 EIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLT 269
           E+A +        G  ++ V   A +  A         A+  +L +D          +L+
Sbjct: 581 ELADKC---VGYCGTDIKAVCAEAALC-ALRRRYPQIYASSQKLLLDVESICVSGRDFLS 636

Query: 270 MIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYM 304
            + +        + + +  L+        +IEP +
Sbjct: 637 AMRKIVPASQRAVVSPAKALTP-------VIEPLL 664


>gi|302334898|ref|YP_003800105.1| membrane protease FtsH catalytic subunit [Olsenella uli DSM 7084]
 gi|301318738|gb|ADK67225.1| membrane protease FtsH catalytic subunit [Olsenella uli DSM 7084]
          Length = 660

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 61/250 (24%), Positives = 94/250 (37%), Gaps = 24/250 (9%)

Query: 23  RPR-TLEEFTGQVEACSNLKVFI------EAAKARAEALDH-VLFVGPPGLGKTTLAQVV 74
           RP+    +  G  EA   L+         E  +     + H VL VGPPG GKT LA+ V
Sbjct: 182 RPKVKFADVAGIDEAVEELEEVRDFLREPERYRKMGAKIPHGVLLVGPPGTGKTLLAKAV 241

Query: 75  ARELGVNFRSTSGP------VIAKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILY 126
           A E GV F S SG       V   A  +  L    ++    ++FIDEI  +       L 
Sbjct: 242 AGEAGVPFFSISGSDFVEMFVGVGASRVRDLFKQAKEVAPSIVFIDEIDAVGRQRGAGLG 301

Query: 127 PAMEDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNF 182
              ++ +  L  M+ E               LIAAT R  +L   L    RF   + ++ 
Sbjct: 302 GGHDEREQTLNQMLVEMDGFEDNSA----VILIAATNRPDILDPALLRPGRFDRQVTVDR 357

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            +++  K I+   A+   +  T +      +    T      L+      A     + I+
Sbjct: 358 PDVKGRKKILGVHAENKPMEKTVDLGRIAKLTPGFTGADLANLMNESALLAARRRRERIS 417

Query: 243 REIADAALLR 252
               + A+ R
Sbjct: 418 MGEVEEAMER 427


>gi|281492850|ref|YP_003354830.1| DNA polymerase III subunit, gamma/tau [Lactococcus lactis subsp.
           lactis KF147]
 gi|281376502|gb|ADA65988.1| DNA polymerase III subunit, gamma/tau [Lactococcus lactis subsp.
           lactis KF147]
          Length = 552

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/248 (17%), Positives = 74/248 (29%), Gaps = 55/248 (22%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     R +  +E  GQ    + LK  I         + H  LF GP G GKT+ A++ A
Sbjct: 5   ALYRKYRSQRFDEMVGQEVVATTLKNAI-----VNHQISHAYLFSGPRGTGKTSAAKIFA 59

Query: 76  RELGVNFRST------------------------SGPVIAKAGDLAALLTN----LEDRD 107
           + +    +                                   ++  +            
Sbjct: 60  KAINCPNQVDGEPCNNCFICDSITKGSLDDVIELDAASNNGVDEIREIRDKSTYAASQAT 119

Query: 108 --VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
             V  IDE+H LS      L   +E+                         + ATT +  
Sbjct: 120 YKVYIIDEVHMLSTGAFNALLKTLEEPT------------------ENVVFVLATTELQK 161

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225
           +   +  R       +    + ++T + +     GL    +A   IA  + G  R A  L
Sbjct: 162 IPATIISRVQRFAFKSITTGD-IRTYLAKIMADEGLEFDGKALDVIAKAAEGGMRDALSL 220

Query: 226 LRRVRDFA 233
           L +   F+
Sbjct: 221 LDQALSFS 228


>gi|238925821|ref|YP_002939339.1| ATP-dependent metalloprotease FtsH [Eubacterium rectale ATCC 33656]
 gi|238877498|gb|ACR77205.1| ATP-dependent metalloprotease FtsH [Eubacterium rectale ATCC 33656]
          Length = 604

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/197 (23%), Positives = 76/197 (38%), Gaps = 22/197 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78
              +  G+ EA  NL   ++      +  D        VL VGPPG GKT LA+ VA E 
Sbjct: 163 RFSDVAGEDEAKENLSEIVDYLHNPKKYTDVGASMPKGVLLVGPPGTGKTMLAKAVAGES 222

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG           A  +  L    +++   ++FIDEI  +    +  +    E
Sbjct: 223 NVPFFSMSGSEFVEMFVGMGASKVRDLFRQAKEKAPCIVFIDEIDAIGKKRDGQMGGNDE 282

Query: 131 -DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            +  L+ ++ E               ++AAT R   L   L    RF   + +   ++  
Sbjct: 283 REQTLNQLLTEMDGFEGNNG----VIILAATNRPESLDPALTRPGRFDRRVPVELPDLAG 338

Query: 188 LKTIVQRGAKLTGLAVT 204
            + I++  AK    +  
Sbjct: 339 REAILKVHAKKIKASDD 355


>gi|21592745|gb|AAM64694.1| cell division protein FtsH-like protein [Arabidopsis thaliana]
          Length = 622

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 59/242 (24%), Positives = 90/242 (37%), Gaps = 24/242 (9%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
           +E     E  S L+  I   K  A     VL VGPPG GKT LA+ VA E GV F S S 
Sbjct: 344 DELV---EIVSCLQGSINYKKLGARLPRGVLLVGPPGTGKTLLARAVAGEAGVPFFSVSA 400

Query: 88  PVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG 139
                      A  +  L          ++FIDE+  +        +    D  L+ ++ 
Sbjct: 401 SEFVELFVGRGAARIRDLFNAARKNSPSIIFIDELDAVGGKR-GRSFNDERDQTLNQLLT 459

Query: 140 EGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAK 197
           E     S      +  +IAAT R   L + L    RF   + +   + E  + I+     
Sbjct: 460 EMDGFESDT----KVIVIAATNRPEALDSALCRPGRFSRKVLVAEPDQEGRRKIL--AIH 513

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD----FAEVAHAKTITREIADAALLRL 253
           L  + + ++A     + +  TP   G  L  + +     A     + + RE    A+ R 
Sbjct: 514 LRDVPLEEDAFLICDLVASLTPGFVGADLANIVNEAALLAARRGGEAVAREDIMEAIERA 573

Query: 254 AI 255
             
Sbjct: 574 KF 575


>gi|327438072|dbj|BAK14437.1| ATP-dependent Zn protease [Solibacillus silvestris StLB046]
          Length = 679

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 57/210 (27%), Positives = 84/210 (40%), Gaps = 20/210 (9%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           +L VGPPG GKT LA+ VA E GV F S SG       V   A  +  L  N +     +
Sbjct: 205 ILLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 264

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLD----LMVGEGPSARSVKINLSRFTLIAATTRVG 164
           +FIDEI  +       L    ++ +      L+  +G  A    I      +IAAT R  
Sbjct: 265 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGANEGII------IIAATNRPD 318

Query: 165 LLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
           +L   L    RF   I +   +++  + I++  A+   L+ T + A         +    
Sbjct: 319 ILDKALLRPGRFDRQITVGHPDVKGREAILKVHARNKPLSDTVDLAAVAQRTPGFSGADL 378

Query: 223 GRLLRRVRDFAEVAHAKTITREIADAALLR 252
             LL      A   + K+I     D A  R
Sbjct: 379 ENLLNEAALVAARKNKKSINMADIDEASDR 408


>gi|282165489|ref|YP_003357874.1| cell division control protein 48 [Methanocella paludicola SANAE]
 gi|282157803|dbj|BAI62891.1| cell division control protein 48 [Methanocella paludicola SANAE]
          Length = 839

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/171 (25%), Positives = 66/171 (38%), Gaps = 18/171 (10%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLED 105
           E    VL  GPPG GKT LA+ VA E G  F S +GP I           L  +  N  D
Sbjct: 224 EPPKGVLLHGPPGTGKTLLAKAVANECGAEFFSIAGPEIMSKYYGESEQRLREIFENARD 283

Query: 106 R--DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
               ++FIDE+  ++   EE+           L+          +       +I AT RV
Sbjct: 284 NAPSIIFIDELDSIAPRREEVTGEVERRVVAQLLTMMDGLEERGQ-----VVVIGATNRV 338

Query: 164 GLLTNPLQ-----DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAAC 209
             +   L+     DR       + ++  ++  I  RG  L  + +   A+ 
Sbjct: 339 DAVDPALRRGGRFDREIEIGVPDAHDRLEILQIHTRGMPLDNVNLEKLAST 389



 Score = 49.3 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 65/170 (38%), Gaps = 19/170 (11%)

Query: 36  ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKA 93
              N K F++           ++  GPPG GKT LA+ VA E   NF S  GP +     
Sbjct: 482 PLKNPKKFVDMGIR---PPKGIVLYGPPGTGKTLLARAVANESEANFISIRGPELLSKWV 538

Query: 94  GDLAALLTNLEDR------DVLFIDEIHRLSIIVE--EILYPAMEDFQLDLMVGEGPSAR 145
           G+    +     +       ++F DE+  L+      E     +E   ++ ++ E     
Sbjct: 539 GESEKAVRETFRKARQVAPAIIFFDELDALTPARSAGEGGLQNVERSIVNQLLTE----L 594

Query: 146 SVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQ 193
              + L    +I AT R  ++ + L    RF   + +     E   +I +
Sbjct: 595 DGLMELEGCVVIGATNRPDIIDSALMRPGRFDRLVYVGPPTAEGRASIFK 644


>gi|281204558|gb|EFA78753.1| cell division cycle protein 48 [Polysphondylium pallidum PN500]
          Length = 791

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 69/196 (35%), Gaps = 29/196 (14%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARA--------EALDHVLFVGPPGLGKTTLAQVVARELG 79
           ++  G  +    ++  +E              +    +L  GPPG GKT +A+ VA E G
Sbjct: 200 DDIGGVRKQLGQIRELVELPLRHPQLFKNIGVKPPKGILLYGPPGCGKTMIARAVANETG 259

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIV---EEILYPA 128
             F   +GP I          +L       E     ++FIDEI  ++      +  +   
Sbjct: 260 AFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTQGEVERR 319

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           +    L LM G    A  + I         AT R   +   L+   RF   I ++  +  
Sbjct: 320 IVSQLLTLMDGLKSRAHVIVI--------GATNRPNSIDPALRRFGRFDREIDISIPDAT 371

Query: 187 DLKTIVQRGAKLTGLA 202
               I++   K   L 
Sbjct: 372 GRLEILRIHTKNMKLD 387



 Score = 53.9 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 54/258 (20%), Positives = 91/258 (35%), Gaps = 23/258 (8%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVAR 76
            T E+  G       LK  ++      E            VLF GPPG GKT LA+ +A 
Sbjct: 470 TTWEDIGGLENVKRELKETVQYPVEHPEKFRKFGMQPSKGVLFYGPPGCGKTLLAKAIAN 529

Query: 77  ELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPA 128
           E   NF S  GP +     G+  A +  L D+       VLF DE+  ++         A
Sbjct: 530 ECQANFISIKGPELLTMWFGESEANVRELFDKARQAAPCVLFFDELDSIARARGSSNGDA 589

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
                 D ++ +  +            +I AT R  ++   +    R    I +   ++ 
Sbjct: 590 GGAG--DRVINQILTEMDGMGVKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDLP 647

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
               I++     + ++   +           +      + +R    A     ++I R+I 
Sbjct: 648 SRVNILKACLNKSPVSKDVDLEFMAQKTHGFSGADLTAICQRACKLAI---RESIERDIE 704

Query: 247 DAALLRLAIDKMGFDQLD 264
           D    + A D+M  D  D
Sbjct: 705 DTRRRQEAGDQMEEDTED 722


>gi|239609886|gb|EEQ86873.1| ribosome biogenesis ATPase RIX7 [Ajellomyces dermatitidis ER-3]
          Length = 751

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 51/213 (23%), Positives = 81/213 (38%), Gaps = 15/213 (7%)

Query: 47  AKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLE 104
           A+    A   VL  GPPG GKT LA+ VA E   NF S  GP +     G+    +  + 
Sbjct: 517 ARVGITAPTGVLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESERAVRQVF 576

Query: 105 DRD------VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIA 158
            R       V+F DE+  L    ++ L  A       L+        + +       +IA
Sbjct: 577 VRARSSVPCVIFFDELDALVPRRDDTLSEASARVVNTLLTELDGLGSARQG----IYVIA 632

Query: 159 ATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSR 216
           AT R  ++   +    R    + +N    ++   I+Q   +   +  +D+          
Sbjct: 633 ATNRPDIIDPAMLRPGRLETLLFVNLPTADERVEILQTLLRKMPIEFSDDIKELARSCEG 692

Query: 217 GTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            +    G LLRR   ++ +    TI  E   AA
Sbjct: 693 FSGADLGSLLRRA-GYSAIKRRDTIRFEDFVAA 724



 Score = 53.2 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 57/279 (20%), Positives = 91/279 (32%), Gaps = 26/279 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
            L +  G  +    L+  I     R +            VL  GPPG GKT +A   A E
Sbjct: 175 NLADLGGVDDVIQELEDLIVLPMTRPQVYSSSKVQPPRGVLLHGPPGCGKTMIANAFAAE 234

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
           LGV F + S P I           L       +     ++FIDEI  ++    E     M
Sbjct: 235 LGVPFIAISAPSIVSGMSGESEKALREHFDEAKKVAPCLIFIDEIDAITPKR-ESAQREM 293

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
           E   +  ++         K +     ++AAT R   L   L+   RF   I L       
Sbjct: 294 EKRIVAQLLTCMDDLALEKTDGKPVIVLAATNRPDSLDAALRRGGRFDKEINLTVPSEPV 353

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA----KTITR 243
            + I+ R          D     +A R+ G        L      A +       K+ T 
Sbjct: 354 REQIL-RALTKDMNLADDLDFKLLAKRTPGFVGADLNDLVSTAGAAAIKRYIELLKSHTG 412

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTM--IARNFGGGPV 280
           +  +        D     ++  + L +  + ++    P+
Sbjct: 413 DEMEIENTANDADGDKSTKISPKILELRRLIKHARETPL 451


>gi|226286674|gb|EEH42187.1| ATPase family AAA domain-containing protein [Paracoccidioides
           brasiliensis Pb18]
          Length = 973

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 69/335 (20%), Positives = 121/335 (36%), Gaps = 47/335 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEA----------LDHVLFVGPPGLG 66
            D   +R  T E+     +    LK     +  R +A          +  +L  GPPG G
Sbjct: 655 VDAESIR-TTFEDVHAPADTIEALKTLTSLSLIRPDAFTYGVLSTDRIPGLLLYGPPGTG 713

Query: 67  KTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLS 118
           KT LA+ VAR+ G      SG  +          ++ A+ T  +     V+FIDE   + 
Sbjct: 714 KTMLAKAVARQSGATVLEVSGSEVYDMYVGEGEKNVKAIFTLAKKLSPCVVFIDEADAIF 773

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
                    A        ++ +          LS F ++ AT R   L + +  R    +
Sbjct: 774 CSR----VAASNRTTHRELINQFLREWDGMNELSAFIMV-ATNRPFDLDDAVLRRLPRRL 828

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
            ++    +D  +I++   +   +     A+ ++A  +  TP  +G  L+ +   A +A  
Sbjct: 829 LVDLPTEQDRLSILKIHLREEQVD----ASLDLAELASRTPLYSGSDLKNMCIAAALA-- 882

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
                E  + A      +   F   + R L             +E ISA +SE    +  
Sbjct: 883 --CVNEENEQAAHHTGDEP--FKYPERRILR-----KAHFERAMEEISASISEDMSTL-S 932

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            I+ +   + +  R  +GR    + W   G   PH
Sbjct: 933 AIKKF--DEKYGDR--KGRRKKSVGW---GFKAPH 960


>gi|145351332|ref|XP_001420035.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580268|gb|ABO98328.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 800

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/197 (21%), Positives = 68/197 (34%), Gaps = 23/197 (11%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +T ++  G  EA   L   +E  +          +    VL  GPPG GKT LA+ VA E
Sbjct: 310 KTFDDVKGCDEAKDELAEIVEYLRNPEKFTRLGGKLPKGVLLTGPPGTGKTLLARAVAGE 369

Query: 78  LGVNFRSTSGPVIA------KAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
             V F   SG           +  +  L    + +   ++FIDEI  +    + I     
Sbjct: 370 ADVPFFYRSGSEFEEMFVGVGSKRVRQLFAAAKKKTPCIVFIDEIDSIGTSRKSI--ENQ 427

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
               L+ ++ E               ++AAT     L   L    RF   + +   +I  
Sbjct: 428 HRKTLNQLLTEMDGFEQNDG----IIVLAATNIPESLDPALTRPGRFDRMVHVPNPDIGG 483

Query: 188 LKTIVQRGAKLTGLAVT 204
            + I++           
Sbjct: 484 RREILEHYLDDKPTTSD 500


>gi|145492132|ref|XP_001432064.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124399173|emb|CAK64667.1| unnamed protein product [Paramecium tetraurelia]
          Length = 443

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 48/215 (22%), Positives = 84/215 (39%), Gaps = 17/215 (7%)

Query: 33  QVEACSNLKV--FIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE-LGVNFRSTSGPV 89
           Q      ++   F E A+        +L  GPPG GKT LA+  A E  G  F  +S  +
Sbjct: 156 QEAVLLPIRFPDFFEGART---PWKGILMYGPPGTGKTYLAKACATEAEGTFFSVSSADL 212

Query: 90  IAK-AGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGP 142
           I+K  G+   L+  L      +   ++FIDEI  +     E       D    ++     
Sbjct: 213 ISKYVGESEKLIKTLFTMAREQKPSIIFIDEIDSMCGARGEG----QNDASRRVITEFLV 268

Query: 143 SARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLA 202
             + V  +     ++ AT     L   ++ RF   I +   +++  + ++Q   K T   
Sbjct: 269 QMQGVGHDDKGVLVLGATNLPWALDTAIRRRFEKRIYIPLPDVQAREYMIQNSLKQTKTT 328

Query: 203 VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
           +T E   ++A ++ G       +L R   +  V  
Sbjct: 329 LTKEQFEDLASKTEGYSGSDISVLVRDAVYEPVRK 363


>gi|103487084|ref|YP_616645.1| ATP-dependent metalloprotease FtsH [Sphingopyxis alaskensis RB2256]
 gi|98977161|gb|ABF53312.1| ATP-dependent metalloprotease FtsH [Sphingopyxis alaskensis RB2256]
          Length = 647

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 51/249 (20%), Positives = 91/249 (36%), Gaps = 23/249 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  EA   L+  +E        +K   +     L VG PG GKT LA+ +A E 
Sbjct: 161 TFDDVAGIDEAREELEEIVEFLKDPTKFSKLGGQIPKGALLVGSPGTGKTLLARAIAGEA 220

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F + SG       V   A  +  +    +     ++FIDEI  +       L    +
Sbjct: 221 GVPFFTISGSDFVEMFVGVGASRVRDMFEQAKRNAPCIVFIDEIDAVGRHRGAGLGNGND 280

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E     + +       ++AAT R  +L   L    RF   + +   +IE
Sbjct: 281 EREQTLNQLLVEMDGFEANEG----IIIVAATNRPDVLDPALLRPGRFDRQVVVPRPDIE 336

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++   +   LA   +           +      L       A     + I  +  
Sbjct: 337 GRQKILEVHTRKKPLAPDVDLRRIARGTPGFSGADLANLCNEAALLAARKGKRLIASDEF 396

Query: 247 DAALLRLAI 255
           + A  ++ +
Sbjct: 397 EEAKDKVMM 405


>gi|323692944|ref|ZP_08107165.1| ATP-dependent metalloprotease FtsH [Clostridium symbiosum
           WAL-14673]
 gi|323502945|gb|EGB18786.1| ATP-dependent metalloprotease FtsH [Clostridium symbiosum
           WAL-14673]
          Length = 625

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 74/188 (39%), Gaps = 23/188 (12%)

Query: 25  RTLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +T  +  GQ EA   L+  +       + A+  A      L VGPPG GKT LA+ VA E
Sbjct: 167 KTFADVAGQDEAKEALQEIVDFLHNPQKYAEIGAILPKGALLVGPPGTGKTLLAKAVAGE 226

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
             V F S SG           A  +  L     ++   ++FIDEI  +    +       
Sbjct: 227 AHVPFFSISGSEFVEMFVGMGAAKVRDLFKQANEKAPCIVFIDEIDTIGKKRDGAGMGGN 286

Query: 130 EDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           ++ +  L  ++ E       K       ++AAT R   L   L    RF   I     ++
Sbjct: 287 DEREQTLNQLLTEMDGFDGRKG----VVILAATNRPESLDKALLRPGRFDRRIPAELPDL 342

Query: 186 EDLKTIVQ 193
           +  + I++
Sbjct: 343 KGREAILK 350


>gi|229587461|ref|YP_002860499.1| ATP-dependent metallopeptidase HflB [Clostridium botulinum Ba4 str.
           657]
 gi|229260215|gb|ACQ51252.1| ATP-dependent metallopeptidase HflB [Clostridium botulinum Ba4 str.
           657]
          Length = 574

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 53/265 (20%), Positives = 93/265 (35%), Gaps = 27/265 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAK-------ARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           + ++  G  +   ++ + +E  K         A+     +  G PG GKT LA+ +A E 
Sbjct: 146 SFKDIAGLKQVKKDMHLLVEFLKDPEKFTHKGAKLPKGAILYGEPGTGKTLLAKALAGEA 205

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S +G           A  + +L     +    ++FIDEI  +    +  L  +  
Sbjct: 206 NVPFFSINGSDFIEMFAGMGAMRVRSLFEEARENAPCIIFIDEIDAIGRKRDVDLDNSEY 265

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY-EIED 187
              L+ ++ E       +  L    +IAAT R+  L   L    RF   I ++     E+
Sbjct: 266 RQTLNALLAEMDGFNGSEGIL----VIAATNRIEDLDQALIRPGRFDKHISVSLPSTPEE 321

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
              I+   +K        +           +P     L+      +   +   I  E  D
Sbjct: 322 RLEIIGIYSKNKCFNKEVDFTNLAKQTIGFSPAQIESLINEAVLISIQYNKDNIDTECID 381

Query: 248 AA-----LLRLAIDKMGFDQLDLRY 267
            A     L   A +    D+ D+R 
Sbjct: 382 KAMYKILLKGHAKEDEKRDKDDIRL 406


>gi|15231775|ref|NP_190891.1| cell division cycle protein 48, putative / CDC48, putative
           [Arabidopsis thaliana]
 gi|28201772|sp|Q9SCN8|CD48D_ARATH RecName: Full=Cell division control protein 48 homolog D;
           Short=AtCDC48d; AltName: Full=Transitional endoplasmic
           reticulum ATPase D
 gi|6630743|emb|CAB64226.1| CDC48-like protein [Arabidopsis thaliana]
 gi|110737510|dbj|BAF00697.1| CDC48 - like protein [Arabidopsis thaliana]
 gi|332645529|gb|AEE79050.1| cell division control protein 48-D [Arabidopsis thaliana]
          Length = 815

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 52/272 (19%), Positives = 89/272 (32%), Gaps = 47/272 (17%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------------VLFVGPPGLGKTTLA 71
            L+E  G  +     K   +  +     L H              +L  GPPG GKT +A
Sbjct: 201 RLDE-VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIA 259

Query: 72  QVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEE 123
           + VA E G  F   +GP I          +L       E     ++FIDEI  ++   E+
Sbjct: 260 RAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREK 319

Query: 124 ILYPA---MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                   +    L LM G    A  +        ++ AT R   +   L+ RFG     
Sbjct: 320 THGEVERRIVSQLLTLMDGLKSRAHVI--------VMGATNRPNSIDPALR-RFG--RFD 368

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
              +I     I +   ++  +   +    E     R +        +    +     A  
Sbjct: 369 REIDIGVPDEIGR--LEVLRIHTKNMKLAEDVDLERVS--------KDTHGYVGADLAAL 418

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIA 272
            T         ++ +  +  +++D   L  +A
Sbjct: 419 CTEAALQCIREKMDVIDLDDEEIDAEILNSMA 450



 Score = 53.9 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 79/242 (32%), Gaps = 20/242 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVARE 77
           + E+  G       L+  ++      E            VLF GPPG GKT LA+ +A E
Sbjct: 479 SWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANE 538

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
              NF S  GP +          ++  +          VLF DE+  ++      +  A 
Sbjct: 539 CQANFISIKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGNSVGDA- 597

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                D ++ +  +            +I AT R  ++   L    R    I +   + E 
Sbjct: 598 -GGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEES 656

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
              I +   + + +A   +           +      + +R   +A   + +    +   
Sbjct: 657 RYQIFKSCLRKSPVAKDVDLRALAKYTQGFSGADITEICQRSCKYAIRENIEKDIEKERK 716

Query: 248 AA 249
            A
Sbjct: 717 RA 718


>gi|325095497|gb|EGC48807.1| ribosome biogenesis ATPase RIX7 [Ajellomyces capsulatus H88]
          Length = 751

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 51/213 (23%), Positives = 81/213 (38%), Gaps = 15/213 (7%)

Query: 47  AKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLE 104
           A+    A   VL  GPPG GKT LA+ VA E   NF S  GP +     G+    +  + 
Sbjct: 517 ARVGITAPTGVLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESERAVRQVF 576

Query: 105 DRD------VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIA 158
            R       V+F DE+  L    ++ L  A       L+        + +       +IA
Sbjct: 577 VRARSSVPCVIFFDELDALVPRRDDTLSEASARVVNTLLTELDGLGSARQG----IYVIA 632

Query: 159 ATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSR 216
           AT R  ++   +    R    + +N    ++   I+Q   +   +  +D+          
Sbjct: 633 ATNRPDIIDPAMLRPGRLETLLFVNLPSADERVEILQTLLRKLPIEFSDDIEGLARSCEG 692

Query: 217 GTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            +    G LLRR   ++ +    TI  E   AA
Sbjct: 693 FSGADLGSLLRRA-GYSAIKRRDTIRFEDFVAA 724



 Score = 50.1 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 51/230 (22%), Positives = 75/230 (32%), Gaps = 20/230 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
            L +  G  +    L+  +     R +            VL  GPPG GKT +A   A E
Sbjct: 175 NLADLGGVDDIIQELEDLLVLPMTRPQVYSSSKVQPPRGVLLHGPPGCGKTMIANAFAAE 234

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
           LGV F + S P I           L       +     ++FIDEI  ++    E     M
Sbjct: 235 LGVPFIAISAPSIVSGMSGESEKALREHFDEAKKVAPCLIFIDEIDAITPKR-ESAQREM 293

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
           E   +  ++         K +     ++AAT R   L   L+   RF   I L       
Sbjct: 294 EKRIVAQLLTCMDDLALEKTDGKPVIVLAATNRPDSLDAALRRGGRFDKEINLTVPSEPV 353

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            + I+ R          D     +A R+ G        L      A +  
Sbjct: 354 REQIL-RTLTRDMNLADDLDFKLLAKRTPGFVGADLNDLVSTAGSAAIKR 402


>gi|317496223|ref|ZP_07954583.1| ATP-dependent metallopeptidase HflB [Gemella moribillum M424]
 gi|316913798|gb|EFV35284.1| ATP-dependent metallopeptidase HflB [Gemella moribillum M424]
          Length = 689

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 59/244 (24%), Positives = 89/244 (36%), Gaps = 19/244 (7%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKAR-------AEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  E    L   +E  K         A+    VL  GPPG GKT LA+ VA E 
Sbjct: 166 TFRDVAGADEEKQELAEMVEFLKDHRKFTKMGAKIPKGVLLEGPPGTGKTLLARAVAGEA 225

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  L    E     ++FIDEI  +       +    +
Sbjct: 226 KVPFFSISGSDFVEMFVGVGASRVRDLFKEAEKNAPCIIFIDEIDAVGRKRGSGVGGGND 285

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
           + +  L   +               +IAAT R  +L N L+   RF   I+++  ++   
Sbjct: 286 EREQTL--NQLLVEMDGFDGEKGIIVIAATNRADVLDNALRRPGRFDRQIKVSTPDVRGR 343

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           + I++  AK   LA   E           +      +L      A   +  +I +   D 
Sbjct: 344 EAILKVHAKNKPLAKDVELRSLAEKTPGFSGADLANILNEAALLAARENKNSIEKADLDE 403

Query: 249 ALLR 252
           A+ R
Sbjct: 404 AMDR 407


>gi|67469879|ref|XP_650911.1| cdc48-like protein [Entamoeba histolytica HM-1:IMSS]
 gi|56467577|gb|EAL45523.1| cdc48-like protein, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 772

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/202 (21%), Positives = 73/202 (36%), Gaps = 25/202 (12%)

Query: 23  RPRTL--EEFTGQVEACSNLKVFIEAAKARA--------EALDHVLFVGPPGLGKTTLAQ 72
           RP  L  ++  G       ++  +E              +    VL  GPPG GKT +A+
Sbjct: 196 RPDDLGYDDIGGCRRQLGQIREMVELPLRHPQLFQAIGIKPPKGVLLYGPPGCGKTMIAR 255

Query: 73  VVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEI 124
            VA E GV     +GP I         G+L       E     ++FIDEI  ++    + 
Sbjct: 256 AVANETGVFLILINGPEIMSKMAGESEGNLREAFAEAEKNAPALIFIDEIDSIAPKR-DK 314

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNF 182
               +E   +  ++           + S   ++AAT R   + + L+   RF   I +  
Sbjct: 315 AQGEVERRVVAQLLTL----MDGMKSRSNVIVMAATNRPNAIDSALRRFGRFDREIDIGV 370

Query: 183 YEIEDLKTIVQRGAKLTGLAVT 204
            +      I+    K   +A  
Sbjct: 371 PDETGRLEILNIHTKKMKIADD 392



 Score = 39.3 bits (90), Expect = 0.82,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 42/106 (39%), Gaps = 16/106 (15%)

Query: 28  EEFTGQVEACSNLKVFIEAA--------KARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           E+  G  +    LK  ++          K   E    VLF GPPG GKT LA+ VA +  
Sbjct: 476 EDIGGLEDVKRELKEVVQYPVEFPDKFRKFGMEPSKGVLFFGPPGCGKTLLAKAVASQCK 535

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRL 117
            NF S  GP +          ++  +          VLF DE+  +
Sbjct: 536 ANFISIKGPELLTMWYGESEANVRDVFDKARQAAPCVLFFDELDSI 581


>gi|300310715|ref|YP_003774807.1| ATP-dependent Zn metallopeptidase [Herbaspirillum seropedicae SmR1]
 gi|300073500|gb|ADJ62899.1| ATP-dependent Zn metallopeptidase (cell division FtsH)
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 629

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 53/249 (21%), Positives = 94/249 (37%), Gaps = 23/249 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAK------ARAEALDH-VLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  EA   ++  +E  +           + H VL VGPPG GKT LA+ +A E 
Sbjct: 155 TFADVAGCDEAKEEVQELVEFLRDPTKFQKLGGRIPHGVLMVGPPGTGKTLLARAIAGEA 214

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F + SG       V   A  +  +  N +     ++FIDEI  +       +    +
Sbjct: 215 KVPFFTISGSDFVEMFVGVGASRVRDMFENAKKHAPCIIFIDEIDAVGRHRGAGMGGGND 274

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  M+ E     +     S   +IAAT R  +L   L    RF   + +   +I 
Sbjct: 275 EREQTLNQMLVEMDGFEAN----SGVIVIAATNRADVLDKALLRPGRFDRQVMVGLPDIR 330

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I+    +   +A   +A          +      L+     FA   + + +  +  
Sbjct: 331 GREQILYVHMRKVPIAPDVKADILARGTPGFSGADLANLVNEAALFAARRNKRLVEMQDF 390

Query: 247 DAALLRLAI 255
           + A  ++ +
Sbjct: 391 EDAKDKIVM 399


>gi|291521148|emb|CBK79441.1| ATP-dependent metalloprotease FtsH [Coprococcus catus GD/7]
          Length = 604

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/197 (23%), Positives = 78/197 (39%), Gaps = 22/197 (11%)

Query: 26  TLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G+ EA  NL   +       +  +  A     +L VGPPG GKT LA+ VA E 
Sbjct: 164 KFSDVAGEDEAKENLTEIVDYLHNPNKYKEIGASMPKGILLVGPPGTGKTMLAKAVAGES 223

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG           A  +  L    +++   ++FIDEI  +    +  +    E
Sbjct: 224 NVPFFSMSGSEFVEMFVGMGASKVRDLFKQAKEKAPCIVFIDEIDAIGKKRDGQIGGNDE 283

Query: 131 -DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            +  L+ ++ E               ++AAT R   L   L    RF   + +   +++ 
Sbjct: 284 REQTLNQLLTEMDGFEGNTG----VIILAATNRPESLDPALTRPGRFDRRVPVELPDLKG 339

Query: 188 LKTIVQRGAKLTGLAVT 204
            + I++  AK   L+  
Sbjct: 340 REEILKVHAKKIRLSDD 356


>gi|258648439|ref|ZP_05735908.1| ATP-dependent protease La [Prevotella tannerae ATCC 51259]
 gi|260851191|gb|EEX71060.1| ATP-dependent protease La [Prevotella tannerae ATCC 51259]
          Length = 820

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 50/263 (19%), Positives = 83/263 (31%), Gaps = 43/263 (16%)

Query: 32  GQVEACSN-LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           G  +     L+               +   GPPG+GKT+L + +A  LG  +   S   +
Sbjct: 348 GLEKVKERILEHLALMQYKEGLKTPILCLYGPPGVGKTSLGKSIANALGRKYVRVSLGGV 407

Query: 91  AKAGDLA----------------ALLTNLEDRDVLFIDEIHRLS---------IIVEEIL 125
               ++                  L+    D  V  +DEI ++S           + E+L
Sbjct: 408 HDEAEVRGHRRTYVGSMPGRIIKGLIKAQTDNPVFVLDEIDKVSDNNYNGDPQSALLEVL 467

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
            P       D       +   V  +LS+   +A    +  L  PL DR  I     +   
Sbjct: 468 DPEQNSAFHD-------NFLDVDYDLSKVLFVATANSLSTLPRPLLDRMEIISVDGYLTE 520

Query: 186 E-------DLKTIVQRGAKLTGLAVTDEAACEIA---MRSRGTPRIAGRLLRRVRDFAEV 235
           E        L   ++ G  L G      AA E            R   + L ++      
Sbjct: 521 EKREIARRHLIPRIEEGLGLLGNIKFAPAALEFIIEKYTRESGVRQLEKQLEKIYRKIAF 580

Query: 236 AHAKTITREIADAALLRLAIDKM 258
             AK  T     A L +  ++++
Sbjct: 581 HKAKNGTLPFDGAQLRQKDVEEL 603


>gi|240274120|gb|EER37638.1| ribosome biogenesis ATPase RIX7 [Ajellomyces capsulatus H143]
          Length = 751

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 51/213 (23%), Positives = 81/213 (38%), Gaps = 15/213 (7%)

Query: 47  AKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLE 104
           A+    A   VL  GPPG GKT LA+ VA E   NF S  GP +     G+    +  + 
Sbjct: 517 ARVGITAPTGVLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESERAVRQVF 576

Query: 105 DRD------VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIA 158
            R       V+F DE+  L    ++ L  A       L+        + +       +IA
Sbjct: 577 VRARSSVPCVIFFDELDALVPRRDDTLSEASARVVNTLLTELDGLGSARQG----IYVIA 632

Query: 159 ATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSR 216
           AT R  ++   +    R    + +N    ++   I+Q   +   +  +D+          
Sbjct: 633 ATNRPDIIDPAMLRPGRLETLLFVNLPSADERVEILQTLLRKLPIEFSDDIEGLARSCEG 692

Query: 217 GTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            +    G LLRR   ++ +    TI  E   AA
Sbjct: 693 FSGADLGSLLRRA-GYSAIKRRDTIRFEDFVAA 724



 Score = 50.8 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 57/287 (19%), Positives = 91/287 (31%), Gaps = 24/287 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
            L +  G  +    L+  +     R +            VL  GPPG GKT +A   A E
Sbjct: 175 NLADLGGVDDIIQELEDLLVLPMTRPQVYSSSKVQPPRGVLLHGPPGCGKTMIANAFAAE 234

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
           LGV F + S P I           L       +     ++FIDEI  ++    E     M
Sbjct: 235 LGVPFIAISAPSIVSGMSGESEKALREHFDEAKKVAPCLIFIDEIDAITPKR-ESAQREM 293

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
           E   +  ++         K +     ++AAT R   L   L+   RF   I L       
Sbjct: 294 EKRIVAQLLTCMDDLALEKTDGKPVIVLAATNRPDSLDAALRRGGRFDKEINLTVPSEPV 353

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA----KTITR 243
            + I+ R          D     +A R+ G        L      A +       K+ T 
Sbjct: 354 REQIL-RTLTRDMNLADDLDFKLLAKRTPGFVGADLNDLVSTAGSAAIKRYIELLKSHTG 412

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
           +  D        D      +  + L +           +++ +  +S
Sbjct: 413 DEMDIGDTANEDDGNRNSNISPKILELRRLIKHARETPLDSEAQTVS 459


>gi|215400737|ref|YP_002327499.1| putative cell division protein FtsH [Vaucheria litorea]
 gi|310946771|sp|B7T1V0|FTSH_VAULI RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|194441187|gb|ACF70915.1| putative cell division protein FtsH [Vaucheria litorea]
          Length = 644

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 56/236 (23%), Positives = 87/236 (36%), Gaps = 16/236 (6%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--V 108
           V+ +GPPG GKT LA+ +A E GV F S SG           A  +  L    +     +
Sbjct: 211 VILIGPPGTGKTLLAKAIAGEAGVPFISISGSEFVEMFVGIGASRVRDLFKTAQQNAPCI 270

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLL 166
           +FIDEI  +       +    ++ +  L  ++ E    +          +IAAT RV +L
Sbjct: 271 VFIDEIDAVGRQRGAGIGGGNDEREQTLNQILTEMDGFKENTG----IIVIAATNRVDVL 326

Query: 167 TNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGR 224
              L    RF   + +N  +I+    I++  AK   L                +      
Sbjct: 327 DGALLRPGRFDRQVSINLPDIKGRLEILKVHAKNKKLDSNISLGLIAQRTPGFSGADLAN 386

Query: 225 LLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV 280
           LL          +   IT    + A+ RL     G    D +   +IA +  G  V
Sbjct: 387 LLNESAILTARRNKFAITMSEVNTAIDRLLAGLEGTSLTDTKNKRLIAYHEIGHAV 442


>gi|155212615|gb|ABT17374.1| bacteriorhodopsin-associated chaperone [uncultured haloarchaeon
           FLAS10H9]
          Length = 732

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 68/198 (34%), Gaps = 23/198 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIE--------AAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +L+E  G  EA   L   +E          + R +    VL  GPPG GKT LA+ +A  
Sbjct: 466 SLDEVGGLSEAKRELVRVVEWPLRYPAALDRLRIDPPAGVLLYGPPGTGKTLLARAIAST 525

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM 129
              NF +  GP +           +  +     +    V+F DE+  L          A 
Sbjct: 526 TEANFIAVDGPELFDKFVGESERAVREVFRQARESAPAVIFFDEVDALGATRGSEGGAAP 585

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
           E     L+                 T+I AT R   +   L    RF   + +   +   
Sbjct: 586 ERVVSQLLTELDGLE-----QRKGVTVIGATNRPDRVDPALLRPGRFDRTVEVGLPDSSA 640

Query: 188 LKTIVQRGAKLTGLAVTD 205
            + I++  A+   L   D
Sbjct: 641 REEILRIHARERPLRDVD 658


>gi|15645339|ref|NP_207511.1| DNA polymerase III subunits gamma and tau [Helicobacter pylori
           26695]
 gi|2313841|gb|AAD07767.1| DNA polymerase III gamma and tau subunits (dnaX) [Helicobacter
           pylori 26695]
          Length = 578

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 78/256 (30%), Gaps = 59/256 (23%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA------- 75
           RP+   E  GQ      L + ++  +         LF G  G GKT+ +++ A       
Sbjct: 9   RPKHFSELVGQESVAKTLSLALDNQRLANAY----LFSGLRGSGKTSSSRIFARALMCEE 64

Query: 76  -----------------RELGVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFID 112
                                ++     G       D+  L+             +  ID
Sbjct: 65  GPKAVPCDTCIQCQSALNNHHIDIIEMDGASNRGIDDVRNLIEQTRYKPSFGRYKIFIID 124

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H  +      L   +E+                    S    + ATT    L   +  
Sbjct: 125 EVHMFTTEAFNALLKTLEE------------------PPSHVKFLLATTDALKLPATILS 166

Query: 173 R---FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           R   F          I  LKTI++       ++    A  ++A   +G+ R    LL + 
Sbjct: 167 RTQHFRFKKIPENSVISHLKTILE----KEQVSYETSALEKLAHSGQGSLRDTITLLEQA 222

Query: 230 RDFAEVAHAKTITREI 245
            ++ + A  ++   E+
Sbjct: 223 INYCDNAITESKVAEM 238


>gi|331240593|ref|XP_003332947.1| DNA-dependent ATPase MGS1 [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
 gi|309311937|gb|EFP88528.1| DNA-dependent ATPase MGS1 [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
          Length = 295

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 7/73 (9%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           S   +        +RP+T+ EF GQ    S L+  I  +K        ++  GP G GKT
Sbjct: 139 SDPSNSNKPLAERVRPKTINEFQGQGHLKSALQ-MIMTSKN------SIILWGPSGSGKT 191

Query: 69  TLAQVVARELGVN 81
           TLA+ +  EL   
Sbjct: 192 TLARCLKDELNRR 204


>gi|331228725|ref|XP_003327029.1| hypothetical protein PGTG_08806 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309306019|gb|EFP82610.1| hypothetical protein PGTG_08806 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 295

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 7/73 (9%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           S   +        +RP+T+ EF GQ    S L+  I  +K        ++  GP G GKT
Sbjct: 139 SDPSNSNKPLAERVRPKTINEFQGQGHLKSALQ-MIMTSKN------SIILWGPSGSGKT 191

Query: 69  TLAQVVARELGVN 81
           TLA+ +  EL   
Sbjct: 192 TLARCLKDELNRR 204


>gi|302662987|ref|XP_003023142.1| hypothetical protein TRV_02721 [Trichophyton verrucosum HKI 0517]
 gi|291187123|gb|EFE42524.1| hypothetical protein TRV_02721 [Trichophyton verrucosum HKI 0517]
          Length = 903

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 53/257 (20%), Positives = 87/257 (33%), Gaps = 23/257 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVARE 77
             ++  G  E    L   ++      E            VLF GPPG GKT LA+ VA E
Sbjct: 580 RWDDIGGLEEVKRELIESVQYPVDHPEKFLKFGLSPSKGVLFYGPPGTGKTLLAKAVANE 639

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
              NF S  GP +          ++  +          V+F+DE+  ++         A 
Sbjct: 640 CAANFISVKGPELLSMWFGESESNIRDIFDKARAAAPCVVFLDELDSIAKSRGASSGDA- 698

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                D +V +  +      +     +I AT R   L N L    R    + +      +
Sbjct: 699 -GGASDRVVNQLLTEMDGMTSKKNVFVIGATNRPEQLDNALCRPGRLDTLVYVPLPNEPE 757

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA---EVAHAKTITRE 244
              I++   + T +A   + A   +     +    G + +R    A    +A A   T+E
Sbjct: 758 RTAILKAQLRKTPVASDVDLAYIASKTHGFSGADLGFVTQRAVKLAIKESIATAIRRTKE 817

Query: 245 IADAALLRLAIDKMGFD 261
              A    +  D    D
Sbjct: 818 REAAGEDAMEDDIDDED 834



 Score = 53.9 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 45/250 (18%), Positives = 82/250 (32%), Gaps = 25/250 (10%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHV--------LFVGPPGLGKTTLAQVVARELG 79
           ++  G  +  + ++  +E      +    +        L  GPPG GKT +A+ VA E G
Sbjct: 308 DDIGGCRKQMAQIRELVELPLRHPQLFKSIGIKPPRGILMFGPPGTGKTLMARAVANETG 367

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMED 131
             F   +GP I          +L       E     ++FIDEI  ++   E+        
Sbjct: 368 AFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAIIFIDEIDSIAPKREK-----TNG 422

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
                +V +  +        S   ++AAT R   +   L+   RF   + +   +     
Sbjct: 423 EVERRVVSQLLTLMDGMKARSNIVVMAATNRPNSIDPALRRFGRFDREVDIGIPDPTGRL 482

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            I+Q   K   L    +     A            L        +    K    ++ +  
Sbjct: 483 EILQIHTKNMKLGEDVDLESIAAETHGYVGSDIASLCSEAAM--QQIREKMDLIDLDEDT 540

Query: 250 LLRLAIDKMG 259
           +    +D +G
Sbjct: 541 IDAEVLDSLG 550


>gi|228989273|ref|ZP_04149266.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus pseudomycoides
           DSM 12442]
 gi|228995456|ref|ZP_04155126.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus mycoides
           Rock3-17]
 gi|228764317|gb|EEM13194.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus mycoides
           Rock3-17]
 gi|228770483|gb|EEM19054.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus pseudomycoides
           DSM 12442]
          Length = 616

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 62/248 (25%), Positives = 88/248 (35%), Gaps = 27/248 (10%)

Query: 26  TLEEFTG-----QV--EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G     Q   E    LK   + A+  A     VL VGPPG GKT LA+ VA E 
Sbjct: 143 RFRDVAGADEEKQELVEVVEFLKDPRKFAEVGARIPKGVLLVGPPGTGKTLLARAVAGEA 202

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG       V   A  +  L  N +     ++FIDEI  +       L    +
Sbjct: 203 GVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCIIFIDEIDAVGRQRGAGLGGGHD 262

Query: 131 DFQLD----LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
           + +      L+  +G  A    I      +IAAT R  +L   L    RF   I ++  +
Sbjct: 263 EREQTLNQLLVEMDGFGANEGII------IIAATNRPDILDPALLRPGRFDRQITVDRPD 316

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +   + +++  A+   L                +      LL      A     K I   
Sbjct: 317 VNGREAVLKVHARNKPLDDDINLRAIATRTPGFSGADLENLLNEAALVAARQDKKKIDMS 376

Query: 245 IADAALLR 252
             D A  R
Sbjct: 377 DIDEATDR 384


>gi|159028508|emb|CAO87315.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 628

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 61/274 (22%), Positives = 98/274 (35%), Gaps = 23/274 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  EA   L+  +   K         A+    VL VGPPG GKT LA+ +A E 
Sbjct: 171 TFDDVAGIDEAKEELQEVVTFLKQPEKFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA 230

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG           A  +  L    ++    ++FIDEI  +       +    +
Sbjct: 231 GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCLIFIDEIDAVGRQRGAGIGGGND 290

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E               +IAAT R  +L + L    RF   + ++  + +
Sbjct: 291 EREQTLNQLLTEMDGFEGNTG----IIIIAATNRPDVLDSALMRPGRFDRQVTVDAPDFK 346

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
               I+   A+   LA               +      LL              IT    
Sbjct: 347 GRLEILDVHARNKKLANDVSIEAIARRTPGFSGADLANLLNEAAILTARRRKDAITLLEI 406

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV 280
           D A+ R+     G   +D +   +IA +  G  +
Sbjct: 407 DDAVDRVIAGMEGTPLVDSKSKRLIAYHEVGHAI 440


>gi|124006624|ref|ZP_01691456.1| spore formation protein [Microscilla marina ATCC 23134]
 gi|123987779|gb|EAY27470.1| spore formation protein [Microscilla marina ATCC 23134]
          Length = 433

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/217 (21%), Positives = 85/217 (39%), Gaps = 45/217 (20%)

Query: 25  RTLEEFTGQVEACSNLKV---FIEAAKARAE-------ALDHVLFVGPPGLGKTTLAQVV 74
           + L E  G  +    +KV   F++  K R +          H++F+G PG GKT +A+++
Sbjct: 171 KRLNEMIGLDKVKRKIKVLTNFVKMHKMRKDKGMNVMMPSLHLVFMGNPGTGKTEVARLI 230

Query: 75  AR--------ELGVNFRSTSGPVIAK-----AGDLAALLTNLEDRDVLFIDEIHRLS--- 118
           A           G    +    ++ K     A  +  ++ N     VLFIDE + L+   
Sbjct: 231 AEIFQEIGLLSRGHLVEARRSDLVEKYVGHTAKKVEEVVMNALGG-VLFIDEAYALTNGG 289

Query: 119 -----IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
                    + L P ME+++ +L+V      + ++  L+                 L  R
Sbjct: 290 TQDFGPEAIDTLTPLMENYRENLIVIAAGYTKDMERFLA-------------ANQGLSSR 336

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACE 210
           F   I  + Y +++L  I ++     G  +TD A   
Sbjct: 337 FSEVIHFDDYNLDELTQIFEKMCHDRGYELTDAAKLH 373


>gi|312115420|ref|YP_004013016.1| ATP-dependent protease La [Rhodomicrobium vannielii ATCC 17100]
 gi|311220549|gb|ADP71917.1| ATP-dependent protease La [Rhodomicrobium vannielii ATCC 17100]
          Length = 803

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 49/217 (22%), Positives = 81/217 (37%), Gaps = 39/217 (17%)

Query: 55  DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL----------- 103
             + FVGPPG+GKT+L Q +AR +   F   S   +    ++                  
Sbjct: 369 PILCFVGPPGVGKTSLGQSIARAMERPFVRVSLGGVHDEAEIRGHRRTYIGSLPGNIIQG 428

Query: 104 -----EDRDVLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKIN 150
                +   V+ +DEI ++   ++        E+L P   +   D  +G       V  +
Sbjct: 429 IKKAGQRNAVMMLDEIDKMGRGIQGDPFAAMLEVLDPEQNNTFRDAYLG-------VPFD 481

Query: 151 LSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACE 210
           LSR T IA    +  +  PL DR  I I+L  Y  ++   I +R      L      A +
Sbjct: 482 LSRVTFIATANMLDTIPGPLLDRMEI-IQLAGYTAKEKLEIAKRYLVARQLEANGLTAEQ 540

Query: 211 IAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
             +       I       + D+   A  +++ REI  
Sbjct: 541 AGIDDDALTAI-------IEDYTREAGVRSLEREIGK 570


>gi|166367879|ref|YP_001660152.1| cell division protein [Microcystis aeruginosa NIES-843]
 gi|166090252|dbj|BAG04960.1| cell division protein [Microcystis aeruginosa NIES-843]
          Length = 628

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 61/274 (22%), Positives = 98/274 (35%), Gaps = 23/274 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  EA   L+  +   K         A+    VL VGPPG GKT LA+ +A E 
Sbjct: 171 TFDDVAGIDEAKEELQEVVTFLKQPEKFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA 230

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG           A  +  L    ++    ++FIDEI  +       +    +
Sbjct: 231 GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCLIFIDEIDAVGRQRGAGIGGGND 290

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E               +IAAT R  +L + L    RF   + ++  + +
Sbjct: 291 EREQTLNQLLTEMDGFEGNTG----IIIIAATNRPDVLDSALMRPGRFDRQVTVDAPDFK 346

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
               I+   A+   LA               +      LL              IT    
Sbjct: 347 GRLEILDVHARNKKLANDVSIEAIARRTPGFSGADLANLLNEAAILTARRRKDAITLLEI 406

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV 280
           D A+ R+     G   +D +   +IA +  G  +
Sbjct: 407 DDAVDRVIAGMEGTPLVDSKSKRLIAYHEVGHAI 440


>gi|166362932|ref|YP_001655205.1| cell division protein [Microcystis aeruginosa NIES-843]
 gi|166085305|dbj|BAG00013.1| cell division protein [Microcystis aeruginosa NIES-843]
          Length = 654

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 53/265 (20%), Positives = 90/265 (33%), Gaps = 27/265 (10%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAKAR-------AEALDHVLFVGPPGLGKTTLAQVVAR 76
           P T  +  G  EA + LK  +E  K         A     VL VGPPG GKT LA+ VA 
Sbjct: 200 PITFSDVAGAEEAKTELKEIVEFLKDAERFNKIGARIPKGVLLVGPPGTGKTLLAKAVAG 259

Query: 77  ELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPA 128
           E GV F S S            A  +  L    +     ++FIDE+  +          +
Sbjct: 260 EAGVTFFSISASEFVELFVGTGAARVRDLFAQAKKNAPSIIFIDELDAIGKSRSSGSGTS 319

Query: 129 M----EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNF 182
                 +  L+ ++ E       +       ++AAT R   L   L    RF   + ++ 
Sbjct: 320 GSNDEREQTLNQLLTEMDGFSPKEAV---VIVLAATNRPETLDAALLRPGRFDRQVLVDR 376

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            ++     I++  A+   +                       L+      A   + + ++
Sbjct: 377 PDLAGRLAILEIYAQRVQMGEDVNLKAIATQTPGFAGADLANLVNEAALLAARNNREKVS 436

Query: 243 REIADAALLRLAIDKMGFDQLDLRY 267
           +     A+ R+     G ++     
Sbjct: 437 QIDFKEAIERVIA---GLEKKSRVL 458


>gi|15894242|ref|NP_347591.1| ATP-dependent Zn protease [Clostridium acetobutylicum ATCC 824]
 gi|15023858|gb|AAK78931.1|AE007610_11 ATP-dependent Zn protease [Clostridium acetobutylicum ATCC 824]
 gi|325508370|gb|ADZ20006.1| ATP-dependent Zn protease [Clostridium acetobutylicum EA 2018]
          Length = 582

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 59/268 (22%), Positives = 105/268 (39%), Gaps = 35/268 (13%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G  EA  +++  I+  K         A     V+  G PG GKT LA+ +A E 
Sbjct: 150 KFNDVAGNEEAKESVQDIIDFLKNPEKYNLYGARMPKGVILYGEPGTGKTMLAKAIAGEA 209

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEIL--YPA 128
            V F + SG       V   A  +  L        + V+FIDEI  +    +        
Sbjct: 210 NVPFYAMSGSDFIQVYVGVGASRIRQLFKKARSNGKAVIFIDEIDAIGKKRDGGKSGGSE 269

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
             D  L+ ++ E    +  +       +IAAT R+ +L + L    RF   I +N  +I 
Sbjct: 270 ERDQTLNALLTEMSGFKEKEG----IVVIAATNRIDVLDSALLRPGRFDRHIEINLPDIS 325

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV----AHAKTIT 242
             K I+     +    V D    ++A   + T   +G  L  + + A +     ++  I 
Sbjct: 326 ARKKIL--SLLVKNKPVKDIDLNDLA---QKTAYFSGAKLENLVNEAAILACKENSSFIE 380

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTM 270
            +  D A   +     G++++D  ++++
Sbjct: 381 NQHMDKAFSIVIA---GYEKVDRSHISL 405


>gi|32473777|ref|NP_866771.1| cell division protein FtsH [Rhodopirellula baltica SH 1]
 gi|81661369|sp|Q7URM7|FTSH2_RHOBA RecName: Full=ATP-dependent zinc metalloprotease FtsH 2
 gi|32444313|emb|CAD74311.1| cell division protein FtsH [Rhodopirellula baltica SH 1]
          Length = 728

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 60/263 (22%), Positives = 98/263 (37%), Gaps = 26/263 (9%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAR 76
           P T E+  G  EA   ++  ++  K               VL VGPPG GKT LA+ +A 
Sbjct: 247 PTTFEDVAGIEEAVDEVREVVDFLKNSEKYQSLGGRIPKGVLLVGPPGTGKTLLAKAIAG 306

Query: 77  ELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPA 128
           E GV F S SG       V   A  +  + T   +R   ++FIDE+  L       +   
Sbjct: 307 EAGVPFFSLSGSDFVEMFVGVGAARVRDMFTQAVNRAPCIIFIDELDALGKSRSGSVVGG 366

Query: 129 MEDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
            ++ +  L  ++ E     S     S   ++AAT R   L   L    RF   + ++  +
Sbjct: 367 HDEREQTLNALLVEMDGFDSN----SGVIVVAATNRPETLDPALLRPGRFDRHVLVDRPD 422

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +   + I+    K   L  T E     ++ S         L+      A       +  E
Sbjct: 423 VAGREEILAVHVKNVKLDETVELKGIASITSGFVGADLANLVNEAALLAARNGKPAVAME 482

Query: 245 IADAALLRLAIDKMGFDQLDLRY 267
             + A+ R+     G ++ +   
Sbjct: 483 EFNEAVERVTA---GLEKKNRVM 502


>gi|332878624|ref|ZP_08446343.1| endopeptidase La [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332683399|gb|EGJ56277.1| endopeptidase La [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 818

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 86/230 (37%), Gaps = 35/230 (15%)

Query: 25  RTLE-EFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNF 82
           + L+ E  G  E    +  ++   K R +    +L F GPPG+GKT+L + +A+ L   +
Sbjct: 351 KILDKEHYGLDEVKRRIIEYLAVLKLRNDMKSPILCFYGPPGVGKTSLGRSIAKALNREY 410

Query: 83  RSTSGPVIAKAGDLA------------ALLTNLED----RDVLFIDEIHRL--------- 117
              S   +    ++              +L  L+       V  +DEI +L         
Sbjct: 411 ARMSLGGLHDEAEIRGHRKTYIGAMPGRILQQLKKAKTSNPVFVLDEIDKLGNSSYQGDP 470

Query: 118 SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
           S  + E+L P       D  +  G        +LS+   IA    +  +   L DR  I 
Sbjct: 471 SAAMLEVLDPEQNKEFYDNFLEMGY-------DLSKVMFIATANDLSTIQPALLDRMEI- 522

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
           I ++ Y IE+   I +R      L      A +I +  +   RI     R
Sbjct: 523 INVSGYTIEEKTEIAKRHLLPKQLKEHGMKATDIQLGKKEIERIVEGYTR 572


>gi|326679769|ref|XP_003201374.1| PREDICTED: ATP-dependent zinc metalloprotease YME1L1-like isoform 2
           [Danio rerio]
          Length = 704

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 53/231 (22%), Positives = 92/231 (39%), Gaps = 27/231 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T E   G  EA + L+  +E  +          +    +L VGPPG GKT LA+ VA E 
Sbjct: 268 TFEHVKGVEEAKNELQDVVEFLRNPQKFTVLGGKLPKGILLVGPPGTGKTLLARAVAGEA 327

Query: 79  GVNFRSTSGPVIA------KAGDLAALLTNLEDRD--VLFIDEIHRL-SIIVEEILYPAM 129
            V F   SG           A  +  L    +     V+FIDE+  +    +E  ++P  
Sbjct: 328 DVPFYYASGSEFDEMFVGVGASRIRNLFKEAKASAPCVIFIDELDSVGGKRIESPMHPY- 386

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
               ++ ++ E    +  +       +I AT     L N L    RF + + +   +++ 
Sbjct: 387 SRQTINQLLAEMDGFKPNEG----VIVIGATNFAEALDNALVRPGRFDMQVTVPIPDVKG 442

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
              I++   K   +     +A +  + +RGT   +G  L  + + A +  A
Sbjct: 443 RTEILEWYLKKIKVD----SAIDAEIIARGTVGFSGAELENLVNQAALKAA 489


>gi|292627733|ref|XP_002666729.1| PREDICTED: ATP-dependent zinc metalloprotease YME1L1-like isoform 1
           [Danio rerio]
          Length = 721

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 53/231 (22%), Positives = 92/231 (39%), Gaps = 27/231 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T E   G  EA + L+  +E  +          +    +L VGPPG GKT LA+ VA E 
Sbjct: 285 TFEHVKGVEEAKNELQDVVEFLRNPQKFTVLGGKLPKGILLVGPPGTGKTLLARAVAGEA 344

Query: 79  GVNFRSTSGPVIA------KAGDLAALLTNLEDRD--VLFIDEIHRL-SIIVEEILYPAM 129
            V F   SG           A  +  L    +     V+FIDE+  +    +E  ++P  
Sbjct: 345 DVPFYYASGSEFDEMFVGVGASRIRNLFKEAKASAPCVIFIDELDSVGGKRIESPMHPY- 403

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
               ++ ++ E    +  +       +I AT     L N L    RF + + +   +++ 
Sbjct: 404 SRQTINQLLAEMDGFKPNEG----VIVIGATNFAEALDNALVRPGRFDMQVTVPIPDVKG 459

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
              I++   K   +     +A +  + +RGT   +G  L  + + A +  A
Sbjct: 460 RTEILEWYLKKIKVD----SAIDAEIIARGTVGFSGAELENLVNQAALKAA 506


>gi|292492311|ref|YP_003527750.1| ATP-dependent Clp protease ATP-binding subunit clpA [Nitrosococcus
           halophilus Nc4]
 gi|291580906|gb|ADE15363.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Nitrosococcus
           halophilus Nc4]
          Length = 753

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 56/299 (18%), Positives = 101/299 (33%), Gaps = 39/299 (13%)

Query: 26  TLEEFT-GQVEACSNLKVFIEAAKAR----AEALDHVLFVGPPGLGKTTLAQVVARELGV 80
            L++   GQ EA   L   I+ +++        +   LF GP G+GKT + + +A  LG+
Sbjct: 459 NLKQVIFGQDEAIEVLSSAIKMSRSGLGDTGRPVGSFLFAGPTGVGKTEVTRQLAYVLGI 518

Query: 81  NFRSTSGP-------VIAKAG--------DLAALLTNLEDRD---VLFIDEIHRLSIIVE 122
                          V    G        D   LLT    +    VL +DEI +    V 
Sbjct: 519 ELIRFDMSEYMERHTVSRLIGAPPGYVGYDQGGLLTEAVCKTPHAVLLLDEIEKAHPDVF 578

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
            +L   M+   L    G     R+V        ++  T+  G        R  I      
Sbjct: 579 NLLLQVMDHGTLTDNNGRKADFRNV--------ILVMTSNAG---AQEISRTSIGFTPQD 627

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           +  + ++ I +R          D      A+      R+  + +  +    +  +     
Sbjct: 628 HSTDAMEVI-RRTFSPEFRNRLDAVIQFSALDGPSIGRVVDKFVLELELLLQDKNVTLEV 686

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
            E+A A L     D+    ++  R +  + +     P+  E +   L+     + D+ E
Sbjct: 687 SEMARAWLAEHGYDE----KMGARPMARLIQEKIKRPLADELLFGKLANGGHVVVDMAE 741


>gi|283780686|ref|YP_003371441.1| ATPase associated with various cellular activities AAA_3 [Pirellula
           staleyi DSM 6068]
 gi|283439139|gb|ADB17581.1| ATPase associated with various cellular activities AAA_3 [Pirellula
           staleyi DSM 6068]
          Length = 351

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 77/228 (33%), Gaps = 36/228 (15%)

Query: 30  FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPV 89
             GQ E    L + + A         H L VG PGL KT L + +A  L ++F       
Sbjct: 28  VVGQTEVIEQLLITLFAR-------GHCLLVGVPGLAKTLLVRSLAESLDLSFSRVQFTP 80

Query: 90  IAKAGDLAALLTNLEDRD----------------VLFIDEIHRLSIIVEEILYPAMEDFQ 133
                D+       E+R                 ++  DEI+R     +  L  AM++ Q
Sbjct: 81  DLMPSDITGTEVIQENRTTSERSFRFLRGPVFASIVLADEINRTPPKTQAALLEAMQERQ 140

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPL----QDRFGIPIRLNFYEIEDLK 189
           + +   + P      +    F L          T PL     DRF   + +++   ++  
Sbjct: 141 VTVAGQKHP------LPDPFFVLATQNPIEQEGTYPLPEAQLDRFMFQVWVDYPSHDEEL 194

Query: 190 TIVQR-GAKLTGL--AVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
            IV+R  A +        D A+     R      IA  + R     A 
Sbjct: 195 EIVKRTTADIETTIAPTLDAASIIHLSRVVRKIPIADHVARYALALAR 242


>gi|225681355|gb|EEH19639.1| cell division cycle protein [Paracoccidioides brasiliensis Pb03]
          Length = 754

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/308 (14%), Positives = 94/308 (30%), Gaps = 40/308 (12%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFT------------GQVEACSNLKVFIEAAK 48
           M+  E LL          +   RP  + E              GQ +    L+  +E   
Sbjct: 447 MIPDENLLQIEDIDISLALQETRPTAMREVFLETPKVRWSDIGGQHKIKRRLQKAVERPL 506

Query: 49  ARAEALD--------HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAA 98
              + +          +L  GPPG  KT   + +A E G+NF +  G  I     G+   
Sbjct: 507 KFPDRMKRLNISGKKGILLYGPPGCSKTLTVKALATEAGLNFLAVKGAEILSMYVGESER 566

Query: 99  LLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152
            L  +  +       ++F DEI  ++               ++++     +       L 
Sbjct: 567 ALREIFRKARSASPSIIFFDEIDAIAARRSNG----PSQGGINVLTTL-LNEMDGIEELK 621

Query: 153 RFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACE 210
              ++AAT +  +L   L    R    + +   +++  K I++     + +    +    
Sbjct: 622 NVLVVAATNKPEVLDPALMRPGRLDNILYVGPPDLQARKEILKIWFSKSEVDDEVDIDRL 681

Query: 211 IAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTM 270
             +    +      +     D A     +T   +            +   +Q+  +    
Sbjct: 682 AQVTDGYSGAEMVSICETAADGALDEEEETGQEQKIAW-----RHFEHALNQVHKQISEA 736

Query: 271 IARNFGGG 278
           +   +   
Sbjct: 737 VIEGYERW 744


>gi|224068787|ref|XP_002302825.1| predicted protein [Populus trichocarpa]
 gi|222844551|gb|EEE82098.1| predicted protein [Populus trichocarpa]
          Length = 485

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 52/248 (20%), Positives = 85/248 (34%), Gaps = 23/248 (9%)

Query: 26  TLEEFTG-----QV--EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G     Q   E    LK         A     VL VGPPG GKT LA+ +A E 
Sbjct: 231 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEA 290

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG           A  +  L    ++    ++F+DEI  +       +    +
Sbjct: 291 GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGND 350

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E               ++AAT R  +L + L    RF   + ++  ++ 
Sbjct: 351 EREQTLNQLLTEMDGFEGNTG----IIVVAATNRADILDSALLRPGRFDRQVTVDVPDVR 406

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
               I++  A                     +      LL      A       I+ +  
Sbjct: 407 GRTEILKVHASNKKFDADVSLDVVAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEI 466

Query: 247 DAALLRLA 254
           D ++ RL 
Sbjct: 467 DDSIDRLC 474


>gi|145596817|ref|YP_001161114.1| ATP-dependent metalloprotease FtsH [Salinispora tropica CNB-440]
 gi|145306154|gb|ABP56736.1| ATP-dependent metalloprotease FtsH [Salinispora tropica CNB-440]
          Length = 671

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 68/249 (27%), Positives = 98/249 (39%), Gaps = 31/249 (12%)

Query: 25  RTLEEFTGQVEACSNL---KVFIEAAKA----RAEALDHVLFVGPPGLGKTTLAQVVARE 77
            T  +  G  EA   L   K F++         A+    VL  GPPG GKT LA+ VA E
Sbjct: 171 TTFADVAGSEEAVEELHEIKDFLQNPAKYQALGAKIPKGVLLFGPPGTGKTLLARAVAGE 230

Query: 78  LGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM 129
            GV F S SG       V   A  +  L    +     ++F+DEI  +       +    
Sbjct: 231 AGVPFYSISGSDFVEMFVGVGASRVRDLFEQAKTNAPAIVFVDEIDAVGRHRGAGMGGGH 290

Query: 130 EDFQLD----LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183
           ++ +      L+  +G   +   I       IAAT R  +L   L    RF   I ++  
Sbjct: 291 DEREQTLNQLLVEMDGFDTKGGVIL------IAATNRPDILDPALLRPGRFDRQIPVDAP 344

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           ++E  K I++  AK       D     +A R   TP  +G  L  V + A +  A+   R
Sbjct: 345 DMEGRKAILRVHAKGKPFT-PDVDLDAVARR---TPGFSGADLANVINEAALLTARRDKR 400

Query: 244 EIADAALLR 252
            I D AL  
Sbjct: 401 AITDDALEE 409


>gi|26390141|dbj|BAC25849.1| unnamed protein product [Mus musculus]
          Length = 806

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 76/226 (33%), Gaps = 20/226 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVARE 77
           T E+  G  +    L+  ++      +            VLF GPPG GKT LA+ +A E
Sbjct: 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 534

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
              NF S  GP +          ++  +          VLF DE+  ++           
Sbjct: 535 CQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGN--IGD 592

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                D ++ +  +            +I AT R  ++   +    R    I +   + + 
Sbjct: 593 GGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKS 652

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
              I++   + + +A   +      M +  +      + +R    A
Sbjct: 653 RVAILKANLRKSPVAKDVDLEFLAKMTNGFSVADLTEICQRACKLA 698



 Score = 53.2 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 51/266 (19%), Positives = 89/266 (33%), Gaps = 32/266 (12%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------------VLFVGPPGLGKTTLA 71
           +L E  G  +     K   +  +     L H              +L  GPPG GKT +A
Sbjct: 197 SLNE-VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255

Query: 72  QVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEE 123
           + VA E G  F   +GP I          +L       E     ++FIDE+  ++   E+
Sbjct: 256 RAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK 315

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLN 181
                        +V +  +        +   ++AAT R   +   L+   RF   + + 
Sbjct: 316 -----THGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIG 370

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
             +      I+Q   K   LA  D    ++A  + G        L       +    K  
Sbjct: 371 IPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADLAAL-CSEAALQAIRKKMD 428

Query: 242 TREIADAALLRLAIDKMGFDQLDLRY 267
             ++ D  +    ++ +     D R+
Sbjct: 429 LIDLEDETIDAEVMNSLAVTMDDFRW 454


>gi|86607410|ref|YP_476173.1| AAA family ATPase [Synechococcus sp. JA-3-3Ab]
 gi|86555952|gb|ABD00910.1| ATPase, AAA family [Synechococcus sp. JA-3-3Ab]
          Length = 629

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 67/300 (22%), Positives = 113/300 (37%), Gaps = 30/300 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEA--------AKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
            L++  G  E    L+  +E         AK   E    VL VGPPG GKT  A+ +A  
Sbjct: 104 RLKDVGGLKEQLQALRELVEIPLKRPDLLAKLGLEPPRGVLLVGPPGTGKTLTARALAES 163

Query: 78  LGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAM 129
           LGVN+ +  GP +     G+  A L  + ++       ++FIDEI  L          A+
Sbjct: 164 LGVNYIALVGPELIGKYYGEAEARLRQVFEKAAKSAPCLVFIDEIDALVPNR-----AAV 218

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
           E      +V +        +      ++AAT R   L   L+   RF   +     + E 
Sbjct: 219 EGEVEKRLVAQMLGLMDGFVAQKGVVVLAATNRPEALDPALRRPGRFDREVIFKVPDREG 278

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            + I+    +   LA  D     +A ++ G      R L +   +A +            
Sbjct: 279 RREILAIHTRGMPLA-EDVDLDSLADQTLGFVGADLRGLCQAAAYAALRRQVPDLGSPIP 337

Query: 248 AALLRLAID-KMGFDQLDLRYLTMI-ARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMI 305
            +L   A D +    Q+    L  +   +     V  + I  GL + +  +++ IE  ++
Sbjct: 338 DSLTVSAADFQQALQQVKPAVLRSVEIESPQ---VSWDQI-GGLEQAKQVLQEAIEGSLL 393



 Score = 50.1 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 55/249 (22%), Positives = 91/249 (36%), Gaps = 22/249 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAA--------KARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           + ++  G  +A   L+  IE +        +A+A+A   +L  GPPG GKT LA+ +A +
Sbjct: 370 SWDQIGGLEQAKQVLQEAIEGSLLHPELYEQAQAQAPKGILLSGPPGTGKTLLAKAIASQ 429

Query: 78  LGVNFRSTSGPVI--AKAGDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAM 129
              NF + SGP +     G     +  L  R       V+FIDEI  L+           
Sbjct: 430 AKANFIAVSGPELLSKWVGSSEQAVRELFARARQCAPCVIFIDEIDTLAPARGSYSGD-- 487

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                D ++G+  +            ++AAT R   L   L    R  + + +   +   
Sbjct: 488 -SGVSDRVLGQLLAELDGIRPSQGVLVVAATNRKASLDPALTRAGRLELHLSVELPDRAA 546

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            + I+    +   L   D      A R+ G       LL      A +   +     +  
Sbjct: 547 RREILAVHNRRRPL-GPDVDLEVWAERTEGWSGADLALLSNRAAIAAIRRHRATAAAVDP 605

Query: 248 AALLRLAID 256
            AL+    D
Sbjct: 606 KALVIRQED 614


>gi|88607446|ref|YP_505851.1| DNA polymerase III, subunits gamma and tau [Anaplasma
           phagocytophilum HZ]
 gi|88598509|gb|ABD43979.1| DNA polymerase III, subunits gamma and tau [Anaplasma
           phagocytophilum HZ]
          Length = 456

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 50/268 (18%), Positives = 99/268 (36%), Gaps = 39/268 (14%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP   ++  GQ          +  + +       +L VG  G+GKTT A++V+  L    
Sbjct: 8   RPSNFDDLVGQDVLV----RILRNSFSVGNLNTPLLMVGASGVGKTTCARIVSLCLNCE- 62

Query: 83  RSTSGPVIAKAGDLAAL--LTNLEDRDVLFIDEIHRLSIIVEEILYPA---------MED 131
              +GP  +  G  A    + N  + DV+ +D     S+    ++  +          + 
Sbjct: 63  ---NGPTSSPCGTCATCTSIKNSHNPDVVEMDAASNTSVDDIRVILESSNYLPVSSRFKV 119

Query: 132 FQLDLMVGEGPSA-----RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           + +D +     SA     ++++        I ATT V  +   +  R  + + L    I+
Sbjct: 120 YIIDEVHMLSTSAFNALLKTLESPAQHAKFIMATTEVRKVPVTVASRC-LRLDLGKLPIK 178

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
            L   + + +    +A  + +   IA  S G+ R +  LL +   ++    +    RE+ 
Sbjct: 179 QLYDHLVKISAKENIAHDESSLMLIAENSSGSVRNSLFLLEQALIYSNNKISLQEVREL- 237

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARN 274
                           +D + L  I R+
Sbjct: 238 -------------LGCVDKKILEGIVRD 252


>gi|312069831|ref|XP_003137865.1| replication factor C subunit 3 [Loa loa]
 gi|307766973|gb|EFO26207.1| replication factor C subunit 3 [Loa loa]
          Length = 354

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 51/162 (31%), Gaps = 26/162 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP +L E     E    L   I         L H+LF GPPG GKT+     A+
Sbjct: 16  PWVEKYRPVSLTEVVSHGEITETLMKLI-----NENRLPHLLFYGPPGTGKTSTILAAAK 70

Query: 77  EL------GVNFRSTSGPVIAKAGDLAALLTNLEDR-------------DVLFIDEIHRL 117
            +             +       G +   + N                  ++ +DE   +
Sbjct: 71  MMYAPKQLSSMVLELNASDDRGIGIVREQIINFAQTSTLSMDKNQKSMPKLIVLDEADAM 130

Query: 118 SIIVEEILYPAMEDFQ--LDLMVGEGPSARSVKINLSRFTLI 157
           +   +  L   +E F   +   +     ++ +    SR T +
Sbjct: 131 TKDAQSALRRVIEKFTDNVRFCIICNYLSKIIPAIQSRCTRL 172


>gi|307211146|gb|EFN87364.1| Transitional endoplasmic reticulum ATPase TER94 [Harpegnathos
           saltator]
          Length = 796

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 87/242 (35%), Gaps = 20/242 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVARE 77
           T ++  G       L+  ++      +            VLF GPPG GKT LA+ +A E
Sbjct: 468 TWDDIGGLQNVKMELQELVQYPVEHPDKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANE 527

Query: 78  LGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAM 129
              NF S  GP +     G+  A + ++ D+       VLF DE+  ++      +  A 
Sbjct: 528 CQANFISVKGPELLTMWFGESEANVRDVFDKARSAAPCVLFFDELDSIAKSRGGTVGDA- 586

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                D ++ +  +            +I AT R  ++   +    R    I +   + + 
Sbjct: 587 -GGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKS 645

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            + I +   + + +A   + +    +    +      + +R    A     +T  R   +
Sbjct: 646 REAIFRANLRKSPVAKDVDLSYIAKVTHGFSGADLTEICQRACKLAIRQCIETEIRREKE 705

Query: 248 AA 249
            A
Sbjct: 706 RA 707



 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 48/264 (18%), Positives = 82/264 (31%), Gaps = 45/264 (17%)

Query: 31  TGQVEACSNLKVFIEAAKARAEALDH--------------VLFVGPPGLGKTTLAQVVAR 76
            G  +     K   +  +     L H              +L  GPPG GKT +A+ VA 
Sbjct: 199 VGYDDIGGVRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 258

Query: 77  ELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPA 128
           E G  F   +GP I          +L       E     ++FIDE+  ++   E+     
Sbjct: 259 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAIIFIDELDAIAPKREK----- 313

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
                   +V +  +        S   ++AAT R   +   L+ RFG       ++ E  
Sbjct: 314 THGEVERRIVSQLLTLMDGMKQSSHVIVMAATNRPNSIDGALR-RFGR------FDREID 366

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             I                  EI        ++A  +            A   +      
Sbjct: 367 IGIP-----------DATGRLEILRIHTKNMKLADDIAAETHGHVGADLASLCSEAALQQ 415

Query: 249 ALLRLAIDKMGFDQLDLRYLTMIA 272
              ++ +  +  D +D   L+ +A
Sbjct: 416 IREKMDLIDLEDDHIDAEVLSSLA 439


>gi|302424037|ref|XP_003009845.1| cell division cycle protein [Verticillium albo-atrum VaMs.102]
 gi|261361679|gb|EEY24107.1| cell division cycle protein [Verticillium albo-atrum VaMs.102]
          Length = 634

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/152 (24%), Positives = 58/152 (38%), Gaps = 15/152 (9%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLED 105
           +    VL  GPPG GKT +A+ VA E G  F   +GP I          +L       E 
Sbjct: 251 KPPRGVLLYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEK 310

Query: 106 RD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
               ++FIDEI  ++   E+             +V +  +        S   ++AAT R 
Sbjct: 311 NSPAIIFIDEIDSIAPKREK-----TNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRP 365

Query: 164 GLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQ 193
             +   L+   RF   + +   +      I+Q
Sbjct: 366 NSIDPALRRFGRFDREVDIGIPDPTGRLEILQ 397



 Score = 49.3 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 49/122 (40%), Gaps = 10/122 (8%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--V 108
           VLF GPPG GKT LA+ VA E   NF S  GP +          ++  +          V
Sbjct: 497 VLFYGPPGTGKTMLAKAVANECAANFISVKGPELLSMWFGESESNIRDIFDKARAAAPCV 556

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +F+DE+  ++      +  A      D +V +  +      +     +I AT R   L  
Sbjct: 557 VFLDELDSIAKARGGSVGDA--GGASDRVVNQLLTEMDGMTSKKNVFVIGATNRPEQLDP 614

Query: 169 PL 170
            L
Sbjct: 615 AL 616


>gi|256372377|ref|YP_003110201.1| ATP-dependent metalloprotease FtsH [Acidimicrobium ferrooxidans DSM
           10331]
 gi|310943114|sp|C7M0M0|FTSH_ACIFD RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|256008961|gb|ACU54528.1| ATP-dependent metalloprotease FtsH [Acidimicrobium ferrooxidans DSM
           10331]
          Length = 660

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 61/252 (24%), Positives = 98/252 (38%), Gaps = 34/252 (13%)

Query: 23  RPRT-LEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           RP+T  ++  G       +K  +         ++  A     +L VGPPG GKT LA+ V
Sbjct: 167 RPKTTFDDVAGYQGVKGEVKEVVDFLRDPSRFSQLGARIPKGILLVGPPGTGKTLLARAV 226

Query: 75  ARELGVNFRSTSGPVIA------KAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILY 126
           A E GV F S SG           A  +  L      +   ++FIDEI  +       L 
Sbjct: 227 AGEAGVPFMSVSGSDFMEMFVGVGAARVRDLFQTARRQSPSIIFIDEIDSIGRKRGTGLG 286

Query: 127 PAMEDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNF 182
              ++ +  L  M+ E       +       ++AAT R  +L   L    RF   I +  
Sbjct: 287 GGHDEREQTLNQMLSEMDGFDPAEG----IVVMAATNRPDILDPALLRPGRFDRQIVVPL 342

Query: 183 YEIEDLKTIVQ---RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
            ++ +   I+Q   RG +L      +  A       +GTP ++G  L  + + A +   +
Sbjct: 343 PDLPERLAILQVHTRGKRLAPDVDLEVMA-------KGTPGMSGADLANLVNEAALNAVR 395

Query: 240 TITREIADAALL 251
               +IA A   
Sbjct: 396 RGATDIAMADFD 407


>gi|262203872|ref|YP_003275080.1| ATP-dependent metalloprotease FtsH [Gordonia bronchialis DSM 43247]
 gi|262087219|gb|ACY23187.1| ATP-dependent metalloprotease FtsH [Gordonia bronchialis DSM 43247]
          Length = 793

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 61/271 (22%), Positives = 100/271 (36%), Gaps = 19/271 (7%)

Query: 25  RTLEEFTGQVEACSNL---KVFIEAA---KARAEALD-HVLFVGPPGLGKTTLAQVVARE 77
            T  +  G  EA   L   K F++     +A    +   VL  GPPG GKT LA+ VA E
Sbjct: 163 TTFADVAGADEAVEELYEIKDFLQNPTRYQALGAKIPRGVLLFGPPGTGKTLLARAVAGE 222

Query: 78  LGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
            GV F + SG       V   A  +  L    +     ++F+DEI  +       L    
Sbjct: 223 AGVPFFTISGSDFVEMFVGVGASRVRDLFEQAKANSPCIIFVDEIDAVGRQRGAGLGGGH 282

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
           ++ +  L   +         + S   LIAAT R  +L   L    RF   I +   ++  
Sbjct: 283 DEREQTL--NQLLVEMDGFGDRSGVILIAATNRPDILDPALLRPGRFDRQIPVGNPDMAG 340

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            K I++  AK   +    +           +      ++      A   + +TIT E+ +
Sbjct: 341 RKAILRVHAKGKPIDADADLDGLAKRTPGMSGADLANVVNEAALLAARENKQTITAEMLE 400

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
            A+ R+        ++   +   +     GG
Sbjct: 401 EAVDRVIGGPRRKSRIISEHEKKVVAYHEGG 431


>gi|83320030|ref|YP_424007.1| DNA polymerase III gamma-tau subunits [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
 gi|83283916|gb|ABC01848.1| DNA polymerase III gamma-tau subunits [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
          Length = 669

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 66/207 (31%), Gaps = 39/207 (18%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           + + +     RP+      G       L+  I+  +        +LF G  G GKT++A+
Sbjct: 3   TNKQSLYRAYRPKDFNSVAGHNSIKEILEKQIKDNRINHA----LLFSGQRGTGKTSVAR 58

Query: 73  VVARELGVNFRSTS------------------------GPVIAKAGDLAALLTNL----- 103
           + A+ +     + S                                ++  +  ++     
Sbjct: 59  IFAKTVNCLNLTGSKACEQCNNCKLANENQLIDIIEIDAASNNGVDEIREIKNSVSTLPI 118

Query: 104 -EDRDVLFIDEIHRLSIIVEEILYPAMEDFQL-DLMVGEGPSARSVKIN-LSRFTLIAAT 160
                V  IDE+H L+      L   +E+  +  + +        +    LSR  +   T
Sbjct: 119 NSKYKVYIIDEVHMLTKQAFNALLKTLEEPPVYTIFILATTEFNKIPQTILSRCQIFNFT 178

Query: 161 TRVGLLTNPLQDRFGIPIRLNFYEIED 187
                  N L++R    +    Y+IE 
Sbjct: 179 KI---DKNSLKNRLQYIVNQENYQIEK 202


>gi|42519607|ref|NP_965537.1| hypothetical protein LJ1732 [Lactobacillus johnsonii NCC 533]
 gi|41583896|gb|AAS09503.1| hypothetical protein LJ_1732 [Lactobacillus johnsonii NCC 533]
          Length = 665

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 50/264 (18%), Positives = 88/264 (33%), Gaps = 36/264 (13%)

Query: 25  RTLEEFTGQVEACSNLKVFI----------EAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           + L+E  G       +K FI          E     +    H LF+G PG GKTT+A++V
Sbjct: 406 QQLDEMIGLETVKQQVKEFIAVTVLNKKREEKGLNTSSQTLHSLFLGNPGTGKTTVARIV 465

Query: 75  AR--ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD----------VLFIDEIHRLSIIVE 122
                             ++A  +A  +    ++           +LF+DE + L+   +
Sbjct: 466 GHVLYEKGVIAEDKLIETSRADLVAGYVGQTAEKTRKVLESALGGILFVDEAYTLASGGQ 525

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP-LQDRFGIPIRLN 181
                   D  L  M        ++ I  + +T         L TNP L+ R        
Sbjct: 526 NDFGKEAIDEILKFM---EDHRSNIMIIFAGYTNDM---EKFLETNPGLRSRIPNKFDFE 579

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEA-ACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            Y ++++  I     K     V   + A  +          +    R VR+     + K 
Sbjct: 580 DYTVDEMVQIGLFSLKKQQYHVNPSSYADLLKNNLSKDNDNSNG--RWVRNL----NDKI 633

Query: 241 ITREIADAALLRLAIDKMGFDQLD 264
           I ++    AL     ++   +  D
Sbjct: 634 IKKQAVRVALTDSYSEEDLINITD 657


>gi|327302246|ref|XP_003235815.1| AAA family ATPase [Trichophyton rubrum CBS 118892]
 gi|326461157|gb|EGD86610.1| AAA family ATPase [Trichophyton rubrum CBS 118892]
          Length = 743

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 55/242 (22%), Positives = 93/242 (38%), Gaps = 20/242 (8%)

Query: 47  AKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLE 104
           ++    A   VL  GPPG GKT LA+ VA E   NF S  GP +     G+    +  + 
Sbjct: 509 SRVGISAPTGVLLWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESERAVRQVF 568

Query: 105 DRD------VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIA 158
            R       V+F DE+  L    ++ +  A       L+        S         +IA
Sbjct: 569 SRARSSIPCVIFFDELDALVPRRDDTMSEASARVVNTLLTELDGLGSSRNG----IYVIA 624

Query: 159 ATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSR 216
           AT R  ++   +    R    + +N    ++   +++   +   + +TDE A        
Sbjct: 625 ATNRPDIIDPAMLRPGRLETLLFVNLPGRDERAEVLRTLIRKLPIEMTDELAELARSCEG 684

Query: 217 GTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFG 276
            +    G LLRR   ++ +    TI  E   AA   +          D++    + +++G
Sbjct: 685 FSGADLGSLLRRA-GYSAIKRRDTIKFEDFVAAKREIRP-----SVTDMKKYESLKKHWG 738

Query: 277 GG 278
           GG
Sbjct: 739 GG 740



 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 75/226 (33%), Gaps = 19/226 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALD--------HVLFVGPPGLGKTTLAQVVARE 77
           +L +  G  +    L+  I     R +            VL  GPPG GKT +A   A E
Sbjct: 175 SLADLGGVDDVIQQLEELIVLPMTRPQIFSASNVQPPRGVLLHGPPGCGKTMIANAFAAE 234

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
           LGV F + S P I           L       +     ++F+DEI  ++    E     M
Sbjct: 235 LGVPFIAISAPSIISGMSGESEKALRDYFEEAKKVAPCLIFMDEIDAITPKR-ESAQREM 293

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
           E   +  ++         K +     ++AAT R   L   L+   RF   I L       
Sbjct: 294 EKRIVAQLLTCMDDLALAKTDGKPVIVLAATNRPDSLDPALRRGGRFDKEINLTVPSEPV 353

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
            + I++   +   LA   +        +         L+      A
Sbjct: 354 REQILRALTREMNLADDLDFKFLAKGTAGFVGADLNDLVSTAATAA 399


>gi|292493674|ref|YP_003529113.1| ATP-dependent metalloprotease FtsH [Nitrosococcus halophilus Nc4]
 gi|291582269|gb|ADE16726.1| ATP-dependent metalloprotease FtsH [Nitrosococcus halophilus Nc4]
          Length = 639

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 61/246 (24%), Positives = 98/246 (39%), Gaps = 27/246 (10%)

Query: 26  TLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  EA   +K  +          K   +    VL VGPPG GKT LA+ +A E 
Sbjct: 151 TFGDVAGCDEAKEEVKELVDFLRDPGRFQKLGGKIPRGVLMVGPPGTGKTLLARAIAGEA 210

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F + SG       V   A  +  +  N +     ++FIDEI  +       L    +
Sbjct: 211 KVPFFTISGSDFVEMFVGVGASRVRDMFENAKKHAPCIIFIDEIDAVGRQRGAGLGGGHD 270

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  M+ E       +       +IAAT R  +L   L    RF   + ++  +I 
Sbjct: 271 EREQTLNQMLVEMDGFEGNEG----VIVIAATNRPDVLDPALLRPGRFDRQVVVSLPDIR 326

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++   +   +A       E A+ +RGTP  +G  L  + + A +  A+   R + 
Sbjct: 327 GREQILKVHLRKVPVAEN----VEPALIARGTPGFSGADLANLVNEAALFAARGNKRLVD 382

Query: 247 DAALLR 252
              L R
Sbjct: 383 MNDLER 388


>gi|223040830|ref|ZP_03611096.1| DNA polymerase III subunit gamma/tau [Campylobacter rectus RM3267]
 gi|222877929|gb|EEF13044.1| DNA polymerase III subunit gamma/tau [Campylobacter rectus RM3267]
          Length = 906

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 48/237 (20%), Positives = 82/237 (34%), Gaps = 33/237 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     RPR   E  GQ    ++L   ++ ++     L H  LF G  G GKT+ A++ +
Sbjct: 4   ALALRYRPRNFSELVGQEAVSTSLTHALDESR-----LTHAYLFSGLRGSGKTSSARIFS 58

Query: 76  RELGVNFRSTSGPVIAKAGDLAALLTNLEDR--DVLFID-----EIHRLSIIVEEILYPA 128
           + L  +     GP        A  +   E R  D++ +D      I  +  ++E+  Y  
Sbjct: 59  KALVCDH----GPTSRPCEQCANCIAANEGRHIDIIEMDAASHRGIDDIKGLIEQTKYAP 114

Query: 129 MEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDR---FGI 176
                   ++ E             ++++        I ATT    L   +  R   F  
Sbjct: 115 AIARFKIFIIDEVHMLSTPAFNALLKTLEEPPPYVKFILATTDPLKLPATVLSRTQHFRF 174

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                   +  L  I+ R      +    EA   +A    G+ R    LL +   +A
Sbjct: 175 RQISRPDVVAHLDFILNR----ENVPHEKEALEILARSGAGSLRDTLTLLDQAIIYA 227


>gi|198471514|ref|XP_002133754.1| GA23065 [Drosophila pseudoobscura pseudoobscura]
 gi|198145951|gb|EDY72381.1| GA23065 [Drosophila pseudoobscura pseudoobscura]
          Length = 718

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 79/242 (32%), Gaps = 37/242 (15%)

Query: 32  GQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           G  +    +  FI  +  +      +L F GPPG+GKT++A+ +AR L   +   S   +
Sbjct: 231 GMEDVKKRILEFIAVSSLKGTTQGKILCFHGPPGVGKTSIARSIARALNREYFRFSVGGL 290

Query: 91  AKAGDLAALLTNL----------------EDRDVLFIDEIHRLSI--------IVEEILY 126
               ++                        +  ++ IDE+ ++           + E+  
Sbjct: 291 MDVAEIKGYRRTYVAALPGKPIQCLKKTKTENPLVLIDEVDKIGKGHLGDPSSAMLELFD 350

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           P      LD  +        V ++LSR   I     V  +   L+DR  +     +   E
Sbjct: 351 PEQNANFLDHYL-------DVPVDLSRVLFICTANVVDSIPEALRDRMELIEMSGYVAEE 403

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
            +       A+   +  +   +         +      L+R     + V + +    ++ 
Sbjct: 404 KVA-----IARQYLVPKSMNDSGLTDEHISISENALNMLIRSYCRESGVRNLQKQIEKVV 458

Query: 247 DA 248
             
Sbjct: 459 RK 460


>gi|162007986|ref|YP_457625.2| DNA polymerase III subunits gamma and tau [Erythrobacter litoralis
           HTCC2594]
          Length = 575

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 84/249 (33%), Gaps = 22/249 (8%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+T  +  GQ      L   IE    R       L  G  G+GKT+ A+++A+ L
Sbjct: 38  ARKYRPQTFSQLIGQEPMVRTLANAIE----RDRLAHAFLMTGVRGVGKTSTARLIAKSL 93

Query: 79  GV-NFRSTSGPVIAKAGDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAME 130
                    GP I   G         E R +  I+        +  +  I+E + Y A+ 
Sbjct: 94  NCIGPDGQGGPTIDPCGQCEPCTAIAEGRHIDVIEMDAASHTGVDDVREIIEAVRYAAVS 153

Query: 131 DFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
                 ++ E             ++++   +    + ATT V  L   +  R      L 
Sbjct: 154 ARFKIYIIDEVHMLSRNAFNALLKTLEEPPAHVKFLFATTEVDKLPVTVLSRTQ-RFDLR 212

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
               + L+       +   +   DEA   IA  + G+ R    +L +    A++     +
Sbjct: 213 RIPADLLQKHFGWVCEQEQVEAEDEALAMIAAAAEGSVRDGLSILDQAIAHADLDADGKV 272

Query: 242 TREIADAAL 250
           T       L
Sbjct: 273 TATRVRDML 281


>gi|330507349|ref|YP_004383777.1| AAA family ATPase [Methanosaeta concilii GP-6]
 gi|328928157|gb|AEB67959.1| AAA family ATPase, CDC48 subfamily [Methanosaeta concilii GP-6]
          Length = 737

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 50/242 (20%), Positives = 77/242 (31%), Gaps = 19/242 (7%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLT 101
           K        +L  GPPG GKT +AQ VA E   NF S  GP      V      +  +  
Sbjct: 492 KMGIRPPKGILLYGPPGTGKTMIAQAVANETNANFISIRGPQMLSKWVGESEKAIREIFR 551

Query: 102 NLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN-LSRFTLIA 158
                   ++F DE+  ++      +    E  ++   V     A    +  L    +IA
Sbjct: 552 KARQVSPAIIFFDELDSIAP-----MRGMDEGGRVMERVVNQLLAELDGLEALKDVVVIA 606

Query: 159 ATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSR 216
           AT R  +L   L    RF   + +   + +    I++  A  T             +   
Sbjct: 607 ATNRPDILDPALLRSGRFDRMLLVGPPDRQGRHEILKIHASRTPKGEDVSLEELAELTDG 666

Query: 217 GTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFG 276
                   L R     A       +       AL ++       + + L Y   I   F 
Sbjct: 667 YVGSDLDNLCREAAMLALREGLDRVEMRHYREALKKVRPSVE--EHM-LSYYERIGERFK 723

Query: 277 GG 278
           GG
Sbjct: 724 GG 725



 Score = 53.9 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 75/224 (33%), Gaps = 15/224 (6%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLT 101
           K   E    VL  GPPG GKT +A+ VA E G NF S +GP I           L  +  
Sbjct: 220 KLGIEPPKGVLLYGPPGTGKTLIAKAVANESGANFISIAGPEIMSKYYGESEQRLREIFE 279

Query: 102 NLEDR--DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA 159
             +     ++FIDEI  ++    E     +       +V +  +         +  +I A
Sbjct: 280 EAQKSAPSIIFIDEIDSIAPKRGE-----VTGEVERRVVAQLLAMMDGLKERGQVVVIGA 334

Query: 160 TTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRG 217
           T R   +   L+   RF   I +   + E    I+Q       +A               
Sbjct: 335 TNREEAIDPALRRPGRFDREIEVGVPDREGRIEILQIHMHSMPVADDVNLEGLADRMHGF 394

Query: 218 TPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFD 261
                  L +     A   +   +T E      +   +  MG D
Sbjct: 395 VGADVNALCKEAAMKALRRYLPDLTSEDEIPQEIIDQMQVMGAD 438


>gi|326783297|ref|YP_004323757.1| clamp loader subunit [Prochlorococcus phage Syn33]
 gi|310005244|gb|ADO99633.1| clamp loader subunit [Prochlorococcus phage Syn33]
          Length = 313

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 56/297 (18%), Positives = 104/297 (35%), Gaps = 48/297 (16%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
            +   RP+T+E+           + F+   +     + ++L  G  G+GKTT+A+ + RE
Sbjct: 6   WVEKYRPQTIEDCILPANVKETFQSFVNQGE-----IPNLLLSGTAGVGKTTIAKALCRE 60

Query: 78  LGVNFRSTSGP--------VIAKAGDLAAL--LTNLEDRDVLFIDEIHRLSIIVEEILYP 127
           LG ++   +G         V  +A   A+   LT      VL IDE    +  V+ +L  
Sbjct: 61  LGADYYVINGSDEGRFLDTVRNQAKSFASTVSLTASAKHKVLIIDEADNTTPDVQLLLRA 120

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP-IRLNFYEIE 186
           ++E+FQ                       I        +  PL  R  +    +     +
Sbjct: 121 SIEEFQ------------------KNCRFIFTCNFKNKIIEPLHSRTTVVEFNVRGQTKQ 162

Query: 187 DLK----TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR-----VRDFAEVAH 237
           +L     T  Q   +   +        E+  +     R     L+R     V D   +A 
Sbjct: 163 ELAGAFFTRCQDILRREEVTFAPRVVAEVVQKYFPDFRRTLNELQRYASTGVIDTGILAA 222

Query: 238 AKTITREIADAALLRLAIDKMGF---DQLDLRYLTMIARNFGG--GPVGIETISAGL 289
                 +   AAL     + +       LD    +++ + +    G +G  +I+A +
Sbjct: 223 LGDANVDTLVAALKNKQFNDVKKWVTQNLDSDPTSIMRKLYDNLSGVMGGPSIAAAV 279


>gi|260946187|ref|XP_002617391.1| hypothetical protein CLUG_02836 [Clavispora lusitaniae ATCC 42720]
 gi|238849245|gb|EEQ38709.1| hypothetical protein CLUG_02836 [Clavispora lusitaniae ATCC 42720]
          Length = 809

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 57/280 (20%), Positives = 93/280 (33%), Gaps = 31/280 (11%)

Query: 20  SLLR------PR-TLEEFTGQVEACSNLKVFIEA--------AKARAEALDHVLFVGPPG 64
           S +R      PR    +  GQ      L   ++         A+    A   VL  GPPG
Sbjct: 531 SAMREIFLEMPRVAWADIAGQHALKQKLTEVVQLPLSAAPTFARLGISAPKGVLLYGPPG 590

Query: 65  LGKTTLAQVVARELGVNFRSTSGP-VIAK-AGDLAALLTNLEDR------DVLFIDEIHR 116
             KT  A+ +A E G+NF +  GP V  K  G+    +  +  +       ++F+DEI  
Sbjct: 591 CSKTLAAKALASESGLNFLAVKGPEVFNKYVGESERAVREIFRKARAAAPSIVFLDEIDA 650

Query: 117 LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RF 174
           L     +    +     L  ++ E          L    ++AAT R   +   L    R 
Sbjct: 651 L--ACRDESATSAGQNVLTSLLNEIDGVE----ELQGVVVVAATNRPTDIDPALLRPGRL 704

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
              I +   + E  + ++ R      +   DE    +A  + G       LL +    A 
Sbjct: 705 DRHIYVAPPDREARRELIARRCAKFSVDGADELFARLADATEGCSGAEVALLCQEAGLAA 764

Query: 235 VAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARN 274
           +       +         L     G     + Y T  A+ 
Sbjct: 765 IMEDSACEKVEERHFDHALKGISRGITPDMIEYYTAFAQR 804



 Score = 52.4 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 49/255 (19%), Positives = 78/255 (30%), Gaps = 34/255 (13%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAKARA--------EALDHVLFVGPPGLGKTTLAQVVA 75
           P   ++  G     + L+  ++     A             +L  GPPG GKT L + VA
Sbjct: 226 PFAFDQVGGLARPVALLRAAVQLPLHHAALFSDFGISPPRGILLHGPPGTGKTMLLRCVA 285

Query: 76  RELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIV-EEILY 126
            E   +    +GP I           L A+          ++F+DEI  L+     E   
Sbjct: 286 HECQAHVLMVNGPSIVSKYLGETETALRAVFAEAVRFQPAIIFMDEIDSLAPKRGSEDAG 345

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
                    L+            +  R  ++ AT R   +   L+   RF   + +   +
Sbjct: 346 ETESRVVATLLTM-----MDGMADAGRVVVVGATNRPNAIDPALRRPGRFDQEVEVGIPD 400

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
               + I+ R            A  EI   +  T    G       D A V     +   
Sbjct: 401 AAAREDILVRQLARMRRCRVSRA--EIRALAEKTHGYVG------ADLAAVCREGVMRA- 451

Query: 245 IADAALLRLAIDKMG 259
               AL R   +  G
Sbjct: 452 -IGRALARDQSETTG 465


>gi|254432500|ref|ZP_05046203.1| cell division protein FtsH [Cyanobium sp. PCC 7001]
 gi|197626953|gb|EDY39512.1| cell division protein FtsH [Cyanobium sp. PCC 7001]
          Length = 644

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 61/274 (22%), Positives = 101/274 (36%), Gaps = 23/274 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAK-------ARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
             ++  G  EA  +L+  +   K         A     VL VGPPG GKT LA+ +A E 
Sbjct: 179 KFDDVAGVEEAKQDLEEVVTFLKTPERFTSVGARIPKGVLLVGPPGTGKTLLAKAIAGEA 238

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG           A  +  L    ++    ++FIDEI  +       +    +
Sbjct: 239 GVPFFSLSGSEFVEMFVGVGASRVRDLFKRAKENSPCLIFIDEIDAVGRQRGAGVGGGND 298

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E           S   +IAAT R  +L + L    RF   ++++  +I+
Sbjct: 299 EREQTLNQLLTEMDGFEGN----SGIIIIAATNRADVLDSALLRPGRFDRQVQVDVPDIK 354

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
              +I++  ++   LA               +      LL            +  T    
Sbjct: 355 GRLSILKVHSRNKKLAEDVSLETIARRTPGFSGADLANLLNEAAILTARRRKEATTLAEI 414

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV 280
           D A+ R+     G    D R   +IA +  G  +
Sbjct: 415 DDAVDRVIAGMEGKPLTDGRSKRLIAYHEVGHAL 448


>gi|138896216|ref|YP_001126669.1| class III heat-shock ATP-dependent Lon protease [Geobacillus
           thermodenitrificans NG80-2]
 gi|134267729|gb|ABO67924.1| Class III heat-shock ATP-dependent Lon protease [Geobacillus
           thermodenitrificans NG80-2]
          Length = 780

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 46/219 (21%), Positives = 80/219 (36%), Gaps = 36/219 (16%)

Query: 55  DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA------------ALLTN 102
             +   GPPG+GKT+LA+ +A+ LG  F   S   +    ++              ++  
Sbjct: 354 PILCLAGPPGVGKTSLARSIAKALGRRFVRMSLGGVRDESEIRGHRRTYVGAMPGRIIQG 413

Query: 103 LED----RDVLFIDEIHRLSI--------IVEEILYPAMEDFQLDLMVGEGPSARSVKIN 150
           ++       V  +DEI ++S          + E+L P       D  + E         +
Sbjct: 414 MKKAGTINPVFLLDEIDKMSSDFRGDPSAAMLEVLDPEQNHTFSDHYIEE-------PYD 466

Query: 151 LSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACE 210
           LS+   IA    +  +  PL DR  I     + E+E L  I +R   L    + +    +
Sbjct: 467 LSKVMFIATANNLATIPQPLLDRMEIIHIPGYTEVEKL-HIAKR--HLLPKQLAEHGLKK 523

Query: 211 IAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            A++ R        ++R     A V   +     I   A
Sbjct: 524 AALQVRDDA--MLDIIRHYTREAGVRELERQLAAICRKA 560


>gi|315646472|ref|ZP_07899590.1| Vesicle-fusing ATPase [Paenibacillus vortex V453]
 gi|315278115|gb|EFU41435.1| Vesicle-fusing ATPase [Paenibacillus vortex V453]
          Length = 500

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 46/205 (22%), Positives = 73/205 (35%), Gaps = 32/205 (15%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE-------ALDHVLFVGPPGLGKTTLAQVVAREL 78
           T EE  GQ  A   L+  ++      +        L  +L  GPPG GKT +A+  A   
Sbjct: 69  TFEEIGGQDNAKQELREALDFLIRHEDIKKFGIRPLKGILLTGPPGTGKTLMAKAAAHYT 128

Query: 79  GVNFRSTSGPVI---------AKAGDL-----AALLTNLEDRDVLFIDEIHRLSIIV--- 121
              F + SG             +  DL     +      +   ++FIDEI  +       
Sbjct: 129 DSIFVAASGSEFVEMYVGVGAGRVRDLFKDARSRAAKENKQNAIIFIDEIDVIGGKREGG 188

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIR 179
           ++  Y    +  L  M G          +  R  +IAAT R  +L + L    RF   I+
Sbjct: 189 QQREYDQTLNQLLTEMDG------IYSQDTPRILVIAATNRKEMLDSALLRPGRFDRHIQ 242

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVT 204
           ++  + +    I+   A    L   
Sbjct: 243 VDLPDKKGRTHILNLHAGNKPLHED 267


>gi|194246414|ref|YP_002004053.1| putative ATP-dependent Zn protease [Candidatus Phytoplasma mali]
 gi|194246872|ref|YP_002004513.1| putative ATP-dependent Zn protease [Candidatus Phytoplasma mali]
 gi|193806771|emb|CAP18198.1| putative ATP-dependent Zn protease [Candidatus Phytoplasma mali]
 gi|193807231|emb|CAP18674.1| putative ATP-dependent Zn protease [Candidatus Phytoplasma mali]
          Length = 370

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 64/168 (38%), Gaps = 14/168 (8%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK---------AGDL---AAL 99
           E    +L  G PG GKTTLA+ VA+E+ + F      + ++           DL   A  
Sbjct: 113 EPPLGILLYGCPGTGKTTLARAVAKEIKLPFFEVPSSMFSQKYRGIATQMVKDLFDKARE 172

Query: 100 LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA 159
           L   +   ++F+DE   + + +      A  +    +   +               +I A
Sbjct: 173 LAEQKGGAIIFLDECETIFVNINN--LEANAEVANVVNAFKTEMTSIDNNPNKPVFVIGA 230

Query: 160 TTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEA 207
           T  +  L   ++ RF   I +  +E ++ +  ++          +DEA
Sbjct: 231 TNHIDQLEEAIKSRFTYNIEVKPFERKEREEFLKFMINRRKNPYSDEA 278


>gi|126663501|ref|ZP_01734498.1| putative transmembrane AAA-metalloprotease FtsH [Flavobacteria
           bacterium BAL38]
 gi|126624449|gb|EAZ95140.1| putative transmembrane AAA-metalloprotease FtsH [Flavobacteria
           bacterium BAL38]
          Length = 639

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 65/272 (23%), Positives = 104/272 (38%), Gaps = 45/272 (16%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T E   G   A   ++  +E  K          +     L VGPPG GKT LA+ VA E 
Sbjct: 187 TFENVAGLEGAKEEIQEIVEFLKTPEKYTSIGGKIPKGALLVGPPGTGKTLLAKAVAGEA 246

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIV-EEILYPAM 129
            V F S SG       V   A  +  L    +++   ++FIDEI  +     +  +  A 
Sbjct: 247 KVPFFSLSGSDFVEMFVGVGASRVRDLFKQAKEKSPSIIFIDEIDAVGRARGKNNMTGAN 306

Query: 130 EDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           ++ +  L  ++ E     +     S   ++AAT R  +L   L    RF   I ++  +I
Sbjct: 307 DERENTLNQLLTEMDGFGTN----SNVIVLAATNRADVLDKALLRAGRFDRQIYVDLPDI 362

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
            + K I +   K    +       +    ++ TP  +G  +  V                
Sbjct: 363 RERKEIFEVHLKPLKKSEE----LDTEFLAKQTPGFSGADIANV---------------C 403

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGG 277
            +AAL+    DK   D+ D  +L  + R  GG
Sbjct: 404 NEAALIAARKDKKAVDKQD--FLDAVDRIVGG 433


>gi|322435537|ref|YP_004217749.1| DNA polymerase III, subunits gamma and tau [Acidobacterium sp.
           MP5ACTX9]
 gi|321163264|gb|ADW68969.1| DNA polymerase III, subunits gamma and tau [Acidobacterium sp.
           MP5ACTX9]
          Length = 680

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/250 (16%), Positives = 82/250 (32%), Gaps = 23/250 (9%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+   +  GQ        V +  A  +       +F G  G+GKTT+A+++A  L
Sbjct: 7   ARKYRPQRFADVAGQDHVT----VTLMNALTQNRIAHGYIFSGHRGIGKTTIARILACAL 62

Query: 79  GVNFRSTSG----PVIAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAM 129
                  S     P   +  +    +      DV+ ID      I  +  + +   Y   
Sbjct: 63  NCRNAIGSAVRPTPEPCEVCESCVEIRAGNSVDVIEIDAATNRGIDEIRELRDAARYRPS 122

Query: 130 EDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            D     ++ E             ++++        + ATT+   +   ++ R       
Sbjct: 123 RDRFKIYILDEAHQITDAAFNALLKTLEEPPDHIVFMMATTQPEDIPQTVRSRCQHFSFH 182

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
               ++ L   ++  A+  G+   + A   +A    G+ R A  ++ +    A +   K 
Sbjct: 183 AVKLVDILSE-LRGIAEHEGVDADEGALSLLAEAGDGSMRDALSIMDQAIASAPMIDGKA 241

Query: 241 ITREIADAAL 250
                    L
Sbjct: 242 RLDAGQIREL 251


>gi|218296645|ref|ZP_03497363.1| ATP-dependent protease La [Thermus aquaticus Y51MC23]
 gi|218242958|gb|EED09491.1| ATP-dependent protease La [Thermus aquaticus Y51MC23]
          Length = 804

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 55/252 (21%), Positives = 90/252 (35%), Gaps = 40/252 (15%)

Query: 55  DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA----------------A 98
             +LFVGPPG+GKT++A+ +A  LG  +   S   +    D+                  
Sbjct: 356 PILLFVGPPGVGKTSIAKSIAEALGRKYVRISLGGVRDESDIRGHRRTYIGAMPGRIIQG 415

Query: 99  LLTNLEDRDVLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKIN 150
           L        V  +DE+ +L I  +        E+L PA     +D  +G       V  +
Sbjct: 416 LRQAGTKNPVFLLDEVDKLGISYQGDPAAALLEVLDPAQNKEFVDHYLG-------VPFD 468

Query: 151 LSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACE 210
           LS    I        +  PL DR       ++ E E L  I +R   L    + +    E
Sbjct: 469 LSEVMFICTANFPQNIPAPLMDRMEAIEFTSYIEQEKL-EIAKRY--LLPRQMRETGLSE 525

Query: 211 IAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTM 270
             +           L+R +  +   A  + + REI  A L + A   +   +  +R    
Sbjct: 526 GQVVVTE-----AALMRLITHYTREAGVRQLEREIG-ALLRKAARQILEEGKKRVRITEK 579

Query: 271 IARNFGGGPVGI 282
               + G P  +
Sbjct: 580 DLEKYLGPPRFL 591


>gi|145592539|ref|YP_001154541.1| AAA family ATPase, CDC48 subfamily protein [Pyrobaculum arsenaticum
           DSM 13514]
 gi|145284307|gb|ABP51889.1| AAA family ATPase, CDC48 subfamily [Pyrobaculum arsenaticum DSM
           13514]
          Length = 731

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 63/271 (23%), Positives = 103/271 (38%), Gaps = 29/271 (10%)

Query: 5   EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAE--------ALDH 56
             ++   + +   ++  +R    E+  G       L+  +E      E            
Sbjct: 434 REIVPSALREIHIEVPRVR---WEDVGGLENVKQELREAVEWPLKYPEKFKKFGLRPPKG 490

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLAALLTNLEDR------DV 108
           +L  GPPG GKT LA+ VA E G NF +  GP I     G+   ++  +  +       V
Sbjct: 491 ILLFGPPGTGKTLLAKAVATESGANFIAVRGPEIFSKWVGESEKMVREIFRKARMAAPAV 550

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +FIDEI  L+          + +  +  ++ E          L    +IAAT R  L+  
Sbjct: 551 VFIDEIDALATARGFGGDSLVSERVVAQLLAE----MDGIKALENVVVIAATNRPDLVDP 606

Query: 169 PLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
            L    RF   I +   + +    I+    + T LA  D    E+A R+ G       LL
Sbjct: 607 ALLRPGRFDRIIYVPPPDYKARLDILLIHTRATPLA-KDVGLEELARRTEGYSGADLELL 665

Query: 227 RRVRDFA---EVAHAKTITREIADAALLRLA 254
            R   F    E  +AK ++    + AL ++ 
Sbjct: 666 VREATFLALREDINAKEVSMRHFEEALKKVR 696



 Score = 54.3 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 79/226 (34%), Gaps = 23/226 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
           T E+     +A   ++  +E      E   H        +L +GPPG GKT LA+ VA E
Sbjct: 177 TWEDIGDLEDAKQKIRELVELPLRHPELFKHLGIEPPKGILLIGPPGTGKTLLAKAVANE 236

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM 129
               F + +GP I           L  +    +     ++FIDEI  ++   EE+     
Sbjct: 237 ANAYFVAINGPEIMSKYYGESEARLREIFEEAKKNAPAIIFIDEIDAIAPKREEVTGEVE 296

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
           +     L+               +  +I AT R   +   L+   RF   I +N  + + 
Sbjct: 297 KRVVAQLLT-----LMDGLQERGQVVVIGATNRPDAVDPALRRPGRFDREIWINPPDFKG 351

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
              I+Q   +   LA   +      +    +      L R     A
Sbjct: 352 RYEILQIHTRNMPLAPDVDLRKLAEITHGFSGADLAALAREAAMSA 397


>gi|116309721|emb|CAH66766.1| OSIGBa0115M15.4 [Oryza sativa Indica Group]
          Length = 577

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 64/287 (22%), Positives = 103/287 (35%), Gaps = 35/287 (12%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRT----LEEFTGQVEACSNLKVFIE------AAKAR 50
           MM     + R +S         RPR      ++  G  EA   L   +         K  
Sbjct: 262 MM---WFIQRQMSAGGGAEKRRRPRKQRVGFDDVQGVDEAKEELVEVVSCLHGSLNYKKL 318

Query: 51  AEALD-HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNL 103
              L   VL VGPPG GKT LA+ VA E G+ F S S            A  +  L    
Sbjct: 319 GAKLPRGVLLVGPPGTGKTLLARAVAGEAGIPFFSVSASEFVEVFVGRGAARVRDLFKEA 378

Query: 104 ED--RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATT 161
           ++    ++FIDE+  +        +    D  L+ ++ E     S      +  ++AAT 
Sbjct: 379 QEAAPSIIFIDELDAVGGSR-GRSFNDERDQTLNQLLTEMDGFDSDM----KVIVMAATN 433

Query: 162 RVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTP 219
           R   L   L    RF   + +   ++E  + I+     L  + + ++      + +  TP
Sbjct: 434 RPKALDPALCRPGRFSRKVLVGVPDLEGRRNIL--AVHLRDVPLEEDPEIICDLVASLTP 491

Query: 220 RIAGRLLRRVRD----FAEVAHAKTITREIADAALLRLAIDKMGFDQ 262
            + G  L  + +     A      T+ RE    A+ R      G  +
Sbjct: 492 GLVGADLANIVNEAALLAARRGGNTVAREDIMDAIEREKYGVNGRQE 538


>gi|15228991|ref|NP_191228.1| CIP111 (CAM INTERACTING PROTEIN 111); ATPase/ calmodulin binding
           [Arabidopsis thaliana]
 gi|9662988|emb|CAC00732.1| calmodulin-binding protein [Arabidopsis thaliana]
 gi|332646031|gb|AEE79552.1| Cam interacting protein 111 [Arabidopsis thaliana]
          Length = 1022

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 54/246 (21%), Positives = 94/246 (38%), Gaps = 33/246 (13%)

Query: 20  SLLR------PR-TLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPG 64
           S +R      P+   E+  GQ E  + L   +E  +   +A           +L  GPPG
Sbjct: 709 SAMREVILEVPKVNWEDVGGQNEVKNQLMEAVEWPQKHQDAFKRIGTRPPSGILMFGPPG 768

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLAALLTNLEDR------DVLFIDEIHR 116
             KT +A+ VA E  +NF +  GP +     G+    + +L  +       ++F DEI  
Sbjct: 769 CSKTLMARAVASEAKLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDS 828

Query: 117 LS--IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-- 172
           L+     E       +     L+V      + V       T+IAAT R   + + L    
Sbjct: 829 LASIRGKENDGVSVSDRVMSQLLVELDGLHQRVG-----VTVIAATNRPDKIDSALLRPG 883

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           RF   + +      D + I++   +    + +D    E+A  ++G       L+ R    
Sbjct: 884 RFDRLLYVGPPNETDREAILKIHLRKIPCS-SDICLKELASITKGYTGADISLICREAAI 942

Query: 233 AEVAHA 238
           A +  +
Sbjct: 943 AALEES 948



 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/154 (26%), Positives = 65/154 (42%), Gaps = 18/154 (11%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--V 108
           VL  GPPG GKT+LA+  AR  GVNF S +GP I           L  +  +  +    V
Sbjct: 421 VLIHGPPGTGKTSLARTFARHSGVNFFSVNGPEIISQYLGESEKALDEVFRSASNATPAV 480

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +FID++  ++   +E      +     L+      +R+         +IAAT R   +  
Sbjct: 481 VFIDDLDAIAPARKEGGEELSQRMVATLLNLMDGISRTDG-----VVVIAATNRPDSIEP 535

Query: 169 PLQ-----DRFGIPIRLNFYEIEDLKTIVQRGAK 197
            L+     DR       +  +  D+  I+ RG +
Sbjct: 536 ALRRPGRLDREIEIGVPSSTQRSDILHIILRGMR 569


>gi|332305251|ref|YP_004433102.1| ATPase associated with various cellular activities AAA_3
           [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332172580|gb|AEE21834.1| ATPase associated with various cellular activities AAA_3
           [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 355

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 70/212 (33%), Gaps = 35/212 (16%)

Query: 30  FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTS--- 86
             GQ      L V + A         H L  G PGL KT +   +A+ L ++++      
Sbjct: 39  IVGQRSVVQQLLVAMLAG-------GHCLLEGAPGLAKTLMVSSLAKTLELDYKRIQFTP 91

Query: 87  ---------GPVIAKAGDLAALLTNLEDRD----VLFIDEIHRLSIIVEEILYPAMEDFQ 133
                      ++    D        +       +L  DEI+R     +  L  AM++  
Sbjct: 92  DLMPSDIIGTEILETDHDSGERFFKFKQGPVFTHILLADEINRTPPKTQAALLEAMQERT 151

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGL-----LTNPLQDRFGIPIRLNFYEIEDL 188
           +         A ++      F ++A    V       L     DRF + +R+ +   E+ 
Sbjct: 152 IS-------YAGNIHPLPKPFFVLATQNPVEQSGTYALPEAQLDRFLMFVRVGYPSAEEE 204

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPR 220
             I+ R      + + +    E  +  +   R
Sbjct: 205 IEILARTTGTQSVTLKEVLHTEEILTLQSLVR 236


>gi|328873528|gb|EGG21895.1| replication factor C subunit [Dictyostelium fasciculatum]
          Length = 1578

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 56/319 (17%), Positives = 110/319 (34%), Gaps = 36/319 (11%)

Query: 18   DISLLRPRTLEEFTGQVEACSNLKVFIEAAKA--RAEALDHVLFVGPPGLGKTTLAQVVA 75
             +   +P T  +  G     S+LK F+       R   L+ VL  GPPG+GKTT A ++ 
Sbjct: 1024 WVDKYKPTTSSDIIGNPGMISHLKEFLMDFDKPLRKYKLNAVLIAGPPGIGKTTCASMIL 1083

Query: 76   RELGVNFRSTSGPVIAKAGDLAALLTNLEDRD-VLFIDEIHRLSIIVEEILYPAMEDFQL 134
            +E+G +    +        D+  LL  + D   +     +++     ++ +     D   
Sbjct: 1084 KEMGYDVIEMNASDTRSKNDIDHLLGGVSDNTSITQFFSVNKQVKTKKKAIIMDEVDGSS 1143

Query: 135  DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
                  G       I  S+   I                + + +R N    + +   + +
Sbjct: 1144 GNNDRGGIKEIIGMIKTSKVPFICICNDYYSTKIKSLKSYCLEMRFNRPTPKQVSDRLLQ 1203

Query: 195  GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
             AK  G+ +    A ++ + ++   R    L++                      L R  
Sbjct: 1204 IAKNEGMQLNQYMAEKLFLSTKNDIRQTIHLMQM---------------------LNRGN 1242

Query: 255  IDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE---------PYMI 305
             +K+    +D +   M  ++F   P   E  S  LS     + + +E         P M+
Sbjct: 1243 NEKINPLNIDKKI-EMAVKDFETSP--FEASSVLLSSANKTLNERMELYFSDYNLIPLMV 1299

Query: 306  QQGFIQRTPRGRLLMPIAW 324
            Q+ ++   PR +      +
Sbjct: 1300 QENYLTNVPRNQTTDRKGY 1318


>gi|170726146|ref|YP_001760172.1| DNA polymerase III subunits gamma and tau [Shewanella woodyi ATCC
           51908]
 gi|169811493|gb|ACA86077.1| DNA polymerase III, subunits gamma and tau [Shewanella woodyi ATCC
           51908]
          Length = 911

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 56/176 (31%), Gaps = 38/176 (21%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RP T E+  GQ      L   +       + L H  LF G  G+GKT+LA++ A+ L   
Sbjct: 11  RPATFEQMVGQSHVLHALTNALT-----QQRLHHAYLFSGTRGVGKTSLARLFAKGLNCE 65

Query: 82  ------------------------FRSTSGPVIAKAGDLAALLTNLEDRD------VLFI 111
                                             K  D   LL N++ R       V  I
Sbjct: 66  QGVTATPCGQCSSCVEISEGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLI 125

Query: 112 DEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
           DE+H LS      L   +E+    +  ++      R     LSR       +    
Sbjct: 126 DEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQRLPVTVLSRCLQFNLKSLTQD 181


>gi|126180341|ref|YP_001048306.1| ATPase [Methanoculleus marisnigri JR1]
 gi|125863135|gb|ABN58324.1| ATPase associated with various cellular activities, AAA_3
           [Methanoculleus marisnigri JR1]
          Length = 324

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 58/296 (19%), Positives = 96/296 (32%), Gaps = 43/296 (14%)

Query: 25  RTLEEF--TGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RT E+     Q     N    IE       +  H+L  G PG  KTT+ ++VAR +   F
Sbjct: 15  RTYEDIRQITQQVVVGN-ATLIEEIFISMISGGHLLIEGVPGTAKTTICKIVARLIDYEF 73

Query: 83  RSTSGPVIAKAGDLAALLTN--------LEDRDVL----FIDEIHRLSIIVEEILYPAME 130
           R   G V  +  D+  +           L+   +      +DE++RL+   +  L  AM 
Sbjct: 74  RRVQGAVDIQPADIIGVRVYDRNRSEFVLQRGPIFTNFLMVDEMNRLTPKTQSALLEAMS 133

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPL----QDRFGIPIRLNFYEIE 186
           + Q+ +         +  +    F +          T PL    +DRF     L   + +
Sbjct: 134 ERQVTI------DGTTYLLPDPYFVIATQNPHEAEGTFPLIEAQRDRFMFSTVLTHLDPK 187

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA-GRLLRRVRDFAEVAHAKTITREI 245
           D   +++R                   R R TP +    +        E+   +T+   +
Sbjct: 188 DELEVLRR--------ECSGELDWGVYRDRITPILGPAEIKTMAATIREIRVDETVLGYM 239

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
            D  L   A   +                F G      T+ A L+     I D   
Sbjct: 240 RDLVLATRAHSDIRLGASSR----ASIALFRG-----STVRAALNGRTYVIPDDAR 286


>gi|81300123|ref|YP_400331.1| FtsH-2 peptidase [Synechococcus elongatus PCC 7942]
 gi|81169004|gb|ABB57344.1| FtsH-2 peptidase. Metallo peptidase. MEROPS family M41
           [Synechococcus elongatus PCC 7942]
          Length = 623

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 55/274 (20%), Positives = 91/274 (33%), Gaps = 20/274 (7%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKARAEAL-------DHVLFVGPPGLGKTTLAQVVARE 77
            T  +  G  EA + L+  ++  K     L         VL VGPPG GKT LA+ VA E
Sbjct: 166 TTFSDVAGVEEAKAELQEIVDFLKTPERYLNIGARIPKGVLLVGPPGTGKTLLAKAVAGE 225

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
             V F S SG         A A  +  L    + +   ++FIDE+  +        +   
Sbjct: 226 ARVPFFSISGSEFVELFVGAGAARVRDLFEQAKQKAPCIVFIDELDAIGKSRASGNFMGG 285

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            D +   +            + +   ++AAT R   L   L    RF   + ++  ++  
Sbjct: 286 NDEREQTLNQLLTEMDGFSADGATVIVLAATNRPETLDPALLRPGRFDRQVLVDRPDLAG 345

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            K I+    +   L    +        S         L+      A       + +   +
Sbjct: 346 RKAILDIYGRKVKLDPEVDLQAIAVRTSGFAGADLANLINEAALLAARNGRTEVAQADLN 405

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVG 281
            A+ R+     G ++          R      VG
Sbjct: 406 EAIERVVA---GLEKKSRVLNDNEKRIVAYHEVG 436


>gi|312143553|ref|YP_003994999.1| protein of unknown function DUF815 [Halanaerobium sp.
           'sapolanicus']
 gi|311904204|gb|ADQ14645.1| protein of unknown function DUF815 [Halanaerobium sp.
           'sapolanicus']
          Length = 422

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 72/190 (37%), Gaps = 16/190 (8%)

Query: 34  VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA 93
            E  +N K FI  +KA      +VL  G  G GK++  + +  E             ++ 
Sbjct: 213 DELINNTKSFINGSKA-----HNVLLYGDSGTGKSSSVKALLNEFQDQGLRLIEITTSQI 267

Query: 94  GDLAALLTNLEDR---DVLFIDEIHRLSIIVEEILYPAMEDFQL----DLMVGEGPSARS 146
            +L+ ++  L  R    ++F+D++       E     A+ +  +    D ++    S R 
Sbjct: 268 KELSEIMEYLSQRGLYFIIFMDDLSFEEFETEYKSLKAIMEGGIESKPDNVLFYATSNRR 327

Query: 147 VKINLS---RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAV 203
             +      R + +     +    + L +RFG+ +  N  + E    IV+  A    + +
Sbjct: 328 HLVREKWQDRKSEVHKNDILNEKLS-LAERFGLTLMYNNPDQEKYLKIVREIAAQENIDI 386

Query: 204 TDEAACEIAM 213
            +      A+
Sbjct: 387 DNSVLENKAL 396


>gi|302770164|ref|XP_002968501.1| hypothetical protein SELMODRAFT_89456 [Selaginella moellendorffii]
 gi|300164145|gb|EFJ30755.1| hypothetical protein SELMODRAFT_89456 [Selaginella moellendorffii]
          Length = 611

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 54/214 (25%), Positives = 76/214 (35%), Gaps = 21/214 (9%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLED 105
           E +  +L  GPPG GK+ LA+ +A E  V F   S P +           L  L +    
Sbjct: 39  EHMKALLLHGPPGCGKSLLAEAIANEASVPFFKVSAPEVVSGTSGESEAKLRTLFSEAFR 98

Query: 106 --RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV--GEGPSARSV-------KINLSRF 154
               ++FIDE+  +    E             LMV   E   A             L R 
Sbjct: 99  VAPAIIFIDEVDAICSKRESAQREMERRIVTQLMVCMDEIDYAPRGSESEGGDSNKLRRL 158

Query: 155 TLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMR 214
            +IAAT R   L   L+ RF   I L   + +    I+   A    L        +    
Sbjct: 159 LVIAATNRPEALDQALRRRFDREICLKVPDEKARLQILTVLASKLRLD----GEFDFKAI 214

Query: 215 SRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +R TP   G  L+ +   A VA  + I  +   A
Sbjct: 215 ARRTPGFVGADLKVLTKEAGVAAIRRIAAKRKAA 248


>gi|302686514|ref|XP_003032937.1| hypothetical protein SCHCODRAFT_85085 [Schizophyllum commune H4-8]
 gi|300106631|gb|EFI98034.1| hypothetical protein SCHCODRAFT_85085 [Schizophyllum commune H4-8]
          Length = 814

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 50/254 (19%), Positives = 89/254 (35%), Gaps = 20/254 (7%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVARE 77
           T ++  G  +    L+  ++      +            VLF GPPG GKT LA+ +A E
Sbjct: 479 TWDDIGGLDKVKLELQETVQYPVEHPDKFLKYGMSPSKGVLFYGPPGTGKTMLAKAIANE 538

Query: 78  LGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAM 129
              NF S  GP +     G+  A + ++ D+       V+F DE+  ++         A 
Sbjct: 539 CNANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCVMFFDELDSIAKARGSSSGDAG 598

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                D ++ +  +      +     +I AT R   + + L    R    I +      +
Sbjct: 599 GAG--DRVLNQILTEMDGMNSKKNVFIIGATNRPDQIDSALLRPGRLDQLIYIPLPGEAE 656

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
             +I++   K + LA   +           +      + +R    A  A  +   R   +
Sbjct: 657 RLSILKATLKKSPLAPDVDLNFLAQKTHGFSGADLTEICQRAAKLAIRASIEADIRRARE 716

Query: 248 AALLRLAIDKMGFD 261
            A       KM  D
Sbjct: 717 KAKNEDGDAKMEED 730



 Score = 52.0 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 46/219 (21%), Positives = 76/219 (34%), Gaps = 19/219 (8%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLED 105
           +    +L  GPPG GKT +A+ VA E G  F   +GP I          +L       E 
Sbjct: 240 KPPRGILMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEK 299

Query: 106 RD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMV-GEGPSARSVKINLSRFTLIAATTR 162
               ++FIDEI  ++   E+            L+   +G  AR      S   ++AAT R
Sbjct: 300 NSPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGLKAR------SNVVVMAATNR 353

Query: 163 VGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPR 220
              +   L+   RF   + +   +      I++   K   LA   +     A        
Sbjct: 354 PNSIDPALRRFGRFDREVDIGIPDPTGRLEILRIHTKNMKLADDVDLEQIAADTHGYVGS 413

Query: 221 IAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259
               L        +    K    ++ +  +    +D +G
Sbjct: 414 DIASLCSEAAM--QQIREKMDLIDLDEDTIDAEVLDSLG 450


>gi|283768399|ref|ZP_06341311.1| ATP-dependent metallopeptidase HflB [Bulleidia extructa W1219]
 gi|283104791|gb|EFC06163.1| ATP-dependent metallopeptidase HflB [Bulleidia extructa W1219]
          Length = 625

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 62/272 (22%), Positives = 98/272 (36%), Gaps = 44/272 (16%)

Query: 26  TLEEFTGQVEACSNLKVFIE------AAKARAEALD-HVLFVGPPGLGKTTLAQVVAREL 78
             ++  G+ EA  NL+  +         K+    +   +L VGPPG GKT LA+ VA E 
Sbjct: 170 RFKDVAGEDEAKENLQEIVNYLHDPNQYKSIGATMPKGILLVGPPGTGKTMLAKAVAGES 229

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRL-SIIVEEILYPAM 129
            V F S SG           A  +  L    +++   ++FIDEI  +        +    
Sbjct: 230 NVPFISISGSEFIEMFVGMGASKVRDLFKKAKEKAPCIVFIDEIDAVGGKRTAGHMGGND 289

Query: 130 E-DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           E +  L+ ++ E               ++AAT R   L   L    RF   + +   +++
Sbjct: 290 EREQTLNQLLTEMDGFEENNG----IVILAATNRPENLDPALLRPGRFDRRVPVELPDLQ 345

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++  AK                     P I   ++ R+   A  A    I  E  
Sbjct: 346 GREEILKVHAKKVKTE----------------PDIDYNMIARIASGASGAELANIINE-- 387

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
            AAL  +   +    Q DL     I   F G 
Sbjct: 388 -AALRAVREHRQAVSQRDLE--ESIEVVFAGY 416


>gi|260429534|ref|ZP_05783511.1| cell division protease FtsH [Citreicella sp. SE45]
 gi|260420157|gb|EEX13410.1| cell division protease FtsH [Citreicella sp. SE45]
          Length = 638

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 93/249 (37%), Gaps = 23/249 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  EA   L+  +E        ++   +     L VGPPG GKT LA+ +A E 
Sbjct: 152 TFDDVAGIDEAKEELEEIVEFLRNPQKFSRLGGKIPKGALLVGPPGTGKTLLARAIAGEA 211

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F + SG       V   A  +  +    +     ++FIDEI  +            +
Sbjct: 212 GVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKNAPCIVFIDEIDAVGRNRGSGYGGGND 271

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E     + +       +IAAT R  +L   L    RF   + +   +I+
Sbjct: 272 EREQTLNQLLVEMDGFEANEG----VIIIAATNRRDVLDPALLRPGRFDRQVMVGNPDIK 327

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I+   A+ T L    +           +      L+      A     + +T E  
Sbjct: 328 GREKILGVHARKTPLGPDVDLRIIARGTPGFSGADLANLVNEAALMAARVGRRFVTMEDF 387

Query: 247 DAALLRLAI 255
           + A  ++ +
Sbjct: 388 ENAKDKVMM 396


>gi|254466957|ref|ZP_05080368.1| ATP-dependent metallopeptidase HflB subfamily [Rhodobacterales
           bacterium Y4I]
 gi|206687865|gb|EDZ48347.1| ATP-dependent metallopeptidase HflB subfamily [Rhodobacterales
           bacterium Y4I]
          Length = 637

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 54/251 (21%), Positives = 93/251 (37%), Gaps = 27/251 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  EA   L+  +E        ++   +     L VGPPG GKT LA+ +A E 
Sbjct: 152 TFDDVAGIDEAKEELEEIVEFLRNPQKFSRLGGKIPKGALLVGPPGTGKTLLARAIAGEA 211

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F + SG       V   A  +  +    +     ++FIDEI  +            +
Sbjct: 212 GVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKNAPCIVFIDEIDAVGRHRGAGYGGGND 271

Query: 131 DFQLD----LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
           + +      L+  +G  A    I L      AAT R  +L   L    RF   + +   +
Sbjct: 272 EREQTLNQLLVEMDGFEANEGVIIL------AATNRKDVLDPALLRPGRFDRQVTVGNPD 325

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           I+  + I+   A+ T L    +           +      L+      A     + +T E
Sbjct: 326 IKGREKILGVHARKTPLGPDVDLRIIARGTPGFSGADLANLVNEAALMAARVGRRFVTME 385

Query: 245 IADAALLRLAI 255
             ++A  ++ +
Sbjct: 386 DFESAKDKVMM 396


>gi|194246667|ref|YP_002004306.1| ATP-dependent Zn protease [Candidatus Phytoplasma mali]
 gi|310943097|sp|B3QZS3|FTSH2_PHYMT RecName: Full=ATP-dependent zinc metalloprotease FtsH 2
 gi|193807024|emb|CAP18460.1| ATP-dependent Zn protease [Candidatus Phytoplasma mali]
          Length = 686

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 59/262 (22%), Positives = 91/262 (34%), Gaps = 29/262 (11%)

Query: 26  TLEEFTGQVEACSNLKVFI---------EAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           T ++  G  E    +   I         EA  AR      VL  GPPG+GKT LA+ VA 
Sbjct: 230 TFKDIAGADEEKEEMSELINFLKNPFKYEAMGAR--IPKGVLLYGPPGVGKTLLAKAVAG 287

Query: 77  ELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPA 128
           E  V F + SG       V   A  +  L    +     ++FIDEI  +S     + Y  
Sbjct: 288 EAKVPFFAVSGSDFIEVYVGLGASRIRKLFNEAKQNAPCIIFIDEIETISHQRGSVNYSN 347

Query: 129 ME-DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
            E D  L+ ++ E               ++AAT +   L   +    RF     +    +
Sbjct: 348 SEHDQTLNQLLVEMDGFTKNIG----VIVMAATNQPESLDLAVTRPGRFDRHFHITLPSV 403

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           +D + I++  A+        +                  +L      A   +   I  E 
Sbjct: 404 KDREAILKLHARNKKFNDDVDFESLAKQTPGFNGAQLEAILNESALLATRRNVLVICNED 463

Query: 246 ADAALLRLAIDKMGFDQLDLRY 267
              AL R+    MG  +   +Y
Sbjct: 464 ISEALDRVL---MGPSKKSKKY 482


>gi|114674814|ref|XP_001143791.1| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes]
          Length = 895

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 72/192 (37%), Gaps = 33/192 (17%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI  ++ R      +L F GPPG+GKT++A+ +AR L   +   S
Sbjct: 425 EDHYGMEDVKKRILEFIAVSQLRGSTQGKILCFYGPPGVGKTSIARSIARALNREYFRFS 484

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ I E+ ++    +        
Sbjct: 485 VGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLILIHEVDKIGRGYQGDPSSALL 544

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V ++LS+   I        +  PL+DR  + I ++ 
Sbjct: 545 ELLDPEQNANFLD-------HYLDVPVDLSKVLFICTANVTDTIPEPLRDRMEM-INVSG 596

Query: 183 YEIEDLKTIVQR 194
           Y  ++   I +R
Sbjct: 597 YVAQEKLAIAER 608


>gi|157827325|ref|YP_001496389.1| ATP-dependent protease La [Rickettsia bellii OSU 85-389]
 gi|157802629|gb|ABV79352.1| ATP-dependent protease La [Rickettsia bellii OSU 85-389]
          Length = 775

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 48/248 (19%), Positives = 86/248 (34%), Gaps = 40/248 (16%)

Query: 34  VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA 93
                 L V   ++K R   L     +GPPG+GKT+L + +A  +G  +   +   +   
Sbjct: 332 ERIIEYLAVLQRSSKIRGPIL---CLIGPPGVGKTSLIKSIAEGMGRKYTKFALGGVRDE 388

Query: 94  GDLA------------ALLTNLED----RDVLFIDEIHRL--------SIIVEEILYPAM 129
            ++              +LT L+       V+ +DEI ++        +  + E+L P  
Sbjct: 389 AEIRGHRKTYLGSMPGKILTQLKKVKTSNPVMLLDEIDKMGSDFRGDPASALLEVLDPEQ 448

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
               +D  +        V+ +LS    I AT     L   L DR  I     + E E ++
Sbjct: 449 NSHFVDHYLE-------VEYDLSNVIFI-ATANSYNLPRALIDRMEIIDISGYMEEEKIQ 500

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
                 AK   +    +           +      L+R     + V   +     +   A
Sbjct: 501 -----IAKNYLVPKQLKMHKIKKGEITISDDAILDLIRYYTKESGVRSLEREIGALTRKA 555

Query: 250 LLRLAIDK 257
           L ++  DK
Sbjct: 556 LKQILADK 563


>gi|68479477|ref|XP_716270.1| hypothetical protein CaO19.6432 [Candida albicans SC5314]
 gi|68479650|ref|XP_716187.1| hypothetical protein CaO19.13790 [Candida albicans SC5314]
 gi|46437846|gb|EAK97186.1| hypothetical protein CaO19.13790 [Candida albicans SC5314]
 gi|46437934|gb|EAK97273.1| hypothetical protein CaO19.6432 [Candida albicans SC5314]
          Length = 766

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 46/218 (21%), Positives = 78/218 (35%), Gaps = 35/218 (16%)

Query: 20  SLLR------PR-TLEEFTGQVEACSNLKVFIEAAKARAEALDH-----------VLFVG 61
           S +R      P+    +  GQ E     +  IE  +   EA D            VL  G
Sbjct: 484 SAMREIFLEMPKVHWSDIGGQEELK---RKLIEVVQLPLEASDSFKNLGVSSPKGVLLYG 540

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DVLFIDE 113
           PPG  KT  A+ +A E G+NF +  GP I     G+    +  +  +       ++F DE
Sbjct: 541 PPGCSKTLTAKALATESGLNFLAVKGPEIFNKYVGESERAIREIFRKARAASPSIIFFDE 600

Query: 114 IHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD- 172
           I  ++   +           L  ++ E          L    ++ AT +   +   L   
Sbjct: 601 IDAIAGDRDGDSSTTAASNVLTSLLNEIDGVE----ELKGVVIVGATNKPTEIDPALLRP 656

Query: 173 -RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAAC 209
            R    I +   + +    I+Q+ ++   L   DE+  
Sbjct: 657 GRLDRHIYVAPPDYDARLQILQKCSRKFNLQSGDESVD 694



 Score = 53.2 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 76/223 (34%), Gaps = 23/223 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEA--------AKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           T ++  G  +    LK  IE         +         +L  GPPG GKT L + VA  
Sbjct: 227 TYDQVGGLSKQIELLKSTIELPLNNPTLFSDFGISPPRGILLHGPPGTGKTMLLRCVANS 286

Query: 78  L-GVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPA 128
           +   +  + +GP I           +  +    +     ++F+DEI  ++          
Sbjct: 287 ITEAHVLTINGPSIVSKYLGETENAIRDIFNEAKKFQPSIIFMDEIDSIAPSRTSD---- 342

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
                   +V +  +      +  R  +I AT R   + + L+   RF   + +   ++E
Sbjct: 343 DSGETESRVVAQLLTVMDGMGDNGRIVVIGATNRPNSIDSALRRPGRFDQEVEIGIPDVE 402

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
             + I+ +               EIA  +  T    G  L  +
Sbjct: 403 AREEILTKQFAKMNSEKCQITKEEIASIASKTHGYVGADLTAL 445


>gi|67922579|ref|ZP_00516086.1| Peptidase M41, FtsH [Crocosphaera watsonii WH 8501]
 gi|67855588|gb|EAM50840.1| Peptidase M41, FtsH [Crocosphaera watsonii WH 8501]
          Length = 636

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 66/293 (22%), Positives = 109/293 (37%), Gaps = 28/293 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +  +  G  EA   L+  +   K         A+    VL +GPPG GKT LA+ VA E 
Sbjct: 187 SFGDVAGIDEAKEELEEVVTFLKEPEKFTAIGAKIPKGVLLIGPPGTGKTLLAKAVAGEA 246

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG           A  +  L    ++    ++FIDEI  +            +
Sbjct: 247 GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCLIFIDEIDAVGRQRGVGYGGGND 306

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E               +IAAT R  +L   L    RF   + +++ +I+
Sbjct: 307 EREQTLNQLLTEMDGFEGNTG----IIVIAATNRPDVLDKALMRPGRFDRQVNVDYPDIK 362

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++  AK   +             +  T      LL     F      + IT    
Sbjct: 363 GRQRILEVHAKDKKMDTQVSLEMVAKRTTGFTGADLSNLLNEAAIFTARRRKEAITMAEI 422

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDL 299
           + A+ R+ +   G   LD +   +IA +  G       I A + +  D +E +
Sbjct: 423 NDAIDRVRVGMEGTPLLDGKNKRLIAYHELGH-----AIVATMLQDHDPVEKV 470


>gi|332886186|gb|EGK06430.1| ATP-dependent zinc metalloprotease FtsH [Dysgonomonas mossii DSM
           22836]
          Length = 673

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 55/247 (22%), Positives = 90/247 (36%), Gaps = 24/247 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  EA   ++  +E  K          +     L VGPPG GKT LA+ VA E 
Sbjct: 193 TFKDVAGLSEAKEEIEEIVEFLKNPSRYTEIGGKIPKGALLVGPPGTGKTLLAKAVAGEA 252

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  L    +++   ++FIDEI  +       L     
Sbjct: 253 DVPFFSLSGSDFVEMFVGVGASRVRDLFKQAKEKSPCIIFIDEIDAIGRARGRNLNMGSN 312

Query: 131 D---FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           D     L+ ++ E     +     S   ++AAT R  +L   L    RF   I ++  ++
Sbjct: 313 DERENTLNQLLTEMDGFGTN----SGVIILAATNRADILDKALLRAGRFDRQITVDLPDL 368

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
            D K I +   +   +  + +           +      +       A     K + +E 
Sbjct: 369 NDRKEIFKVHLRPIKIDDSVDVEFLSRQTPGFSGADIANVCNEAALIAARKGKKVVQKED 428

Query: 246 ADAALLR 252
              A+ R
Sbjct: 429 FTNAVDR 435


>gi|285017955|ref|YP_003375666.1| cell division protein ftsh (ATP-dependent zinc metallopeptidase)
           [Xanthomonas albilineans GPE PC73]
 gi|283473173|emb|CBA15679.1| probable cell division protein ftsh (atp-dependent zinc
           metallopeptidase) [Xanthomonas albilineans]
          Length = 644

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 53/246 (21%), Positives = 86/246 (34%), Gaps = 23/246 (9%)

Query: 26  TLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  EA   +   +       +  K   +    VL VGPPG GKT LA+ +A E 
Sbjct: 163 TFADVAGCDEAKEEVGELVDFLRDPSKFTKLGGKIPRGVLMVGPPGTGKTLLARAIAGEA 222

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  +    +     ++FIDEI  +       L    +
Sbjct: 223 KVPFFSISGSDFVEMFVGVGASRVRDMFEQAKKHAPCIIFIDEIDAVGRHRGAGLGGGHD 282

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E       +       +IAAT R  +L   L    RF   + +   ++ 
Sbjct: 283 EREQTLNQLLVEMDGFEGGEG----VIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVR 338

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++   +   LA   E           +      L      FA     K +  +  
Sbjct: 339 GREQILKVHMRKLPLADDVEPMVIARGTPGFSGADLANLCNEAALFAARESVKEVRMDHF 398

Query: 247 DAALLR 252
           D A  +
Sbjct: 399 DRARDK 404


>gi|253579752|ref|ZP_04857020.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848751|gb|EES76713.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 656

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 57/275 (20%), Positives = 100/275 (36%), Gaps = 26/275 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEA-------LDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  GQ EA  +L+  ++      +            L VGPPG GKT LA+ VA E 
Sbjct: 183 TFRDVAGQDEAKESLQEVVDFLHNPGKYTTIGAKLPKGALLVGPPGTGKTLLAKAVAGEA 242

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG           A  +  L    +     ++FIDEI  +    +       +
Sbjct: 243 HVPFFSLSGSEFVEMFVGVGASRVRDLFEEAKKNAPCIIFIDEIDAIGKSRDSHYGGGND 302

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E     + K  L    ++AAT R  +L   L    RF   + ++  +++
Sbjct: 303 EREQTLNQLLAEMDGFDTSKGLL----ILAATNRPEVLDPALLRPGRFDRRVIVDRPDLK 358

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
               I++  A+       DE      +    +  +   L   + + A +A     +    
Sbjct: 359 GRIEILKVHAR---NVYLDETVDFENIALATSGAVGSDLANMINEAAILAVKSGRSAVSQ 415

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVG 281
              L  + +  +G ++ D        R      VG
Sbjct: 416 KDLLEAVEVVLVGKEKKDRILSAQERRIVSYHEVG 450


>gi|227824810|ref|ZP_03989642.1| ATP-dependent metalloprotease ftsH [Acidaminococcus sp. D21]
 gi|226905309|gb|EEH91227.1| ATP-dependent metalloprotease ftsH [Acidaminococcus sp. D21]
          Length = 646

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 63/250 (25%), Positives = 92/250 (36%), Gaps = 27/250 (10%)

Query: 27  LEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVARELG 79
             +  G  EA   L+  +E  KA        A+    VL  GPPG GKT LA+ VA E G
Sbjct: 153 FRDVAGADEAKQELREVVEFLKAPQKYNQLGAKIPKGVLLYGPPGTGKTLLAKAVAGEAG 212

Query: 80  VNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMED 131
           V F S SG       V   A  +  L    +     ++FIDEI  +       L    ++
Sbjct: 213 VPFFSISGSDFVEMFVGVGASRVRDLFDQAKKNAPCIVFIDEIDAVGRQRGAGLGGGHDE 272

Query: 132 FQLD----LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
            +      L+  +G  A    I      +IAAT R  +L   L    RF   I ++  +I
Sbjct: 273 REQTLNQLLVEMDGFGANEGII------MIAATNRPDILDPALLRPGRFDRQIVVDRPDI 326

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
                I++  AK   +    +           T      L+      A   +  TIT   
Sbjct: 327 RGRLAILKVHAKGKPIDSNVDMEVLARRTPGFTGADLANLVNEGALLAARHNQMTITMSD 386

Query: 246 ADAALLRLAI 255
            + A  R+ +
Sbjct: 387 LEEAAERVMM 396


>gi|227494494|ref|ZP_03924810.1| ATP-dependent metalloprotease FtsH [Actinomyces coleocanis DSM
           15436]
 gi|226832228|gb|EEH64611.1| ATP-dependent metalloprotease FtsH [Actinomyces coleocanis DSM
           15436]
          Length = 670

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 62/250 (24%), Positives = 90/250 (36%), Gaps = 24/250 (9%)

Query: 23  RPR-TLEEFTGQVEACSNL---KVFIEAA----KARAEALDHVLFVGPPGLGKTTLAQVV 74
           RP+    +  G  EA   L   K F+  A    K  A+    VL  GPPG GKT LA+ V
Sbjct: 165 RPQVRFSDVAGADEAVEELEEIKNFLANAERYQKVGAKVPRGVLLYGPPGTGKTLLAKAV 224

Query: 75  ARELGVNFRSTSGPVIA------KAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILY 126
           A E  V F S SG           A  +  L    +     ++FIDEI  +         
Sbjct: 225 AGEAEVPFFSISGSEFMELYVGVGASRVRELFDKAKKAAPAIIFIDEIDAVGRQRGSGYG 284

Query: 127 PAME--DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNF 182
              +  D  L+ M+ E     +    L    +IAAT R  +L + L    RF   I +  
Sbjct: 285 GGSDERDQTLNQMLVEMDGFDATTNLL----VIAATNRPDVLDSALLRPGRFDRQISVEA 340

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            +++  + I++  A    L                T      +L         ++A  I 
Sbjct: 341 PDMKGREAILKVHANGKPLTNDVNLRLIAKRTPGFTGADLANVLNEAALLTARSNADLID 400

Query: 243 REIADAALLR 252
               D A+ R
Sbjct: 401 MRAIDEAIDR 410


>gi|295667187|ref|XP_002794143.1| ATP-dependent protease La [Paracoccidioides brasiliensis Pb01]
 gi|226286249|gb|EEH41815.1| ATP-dependent protease La [Paracoccidioides brasiliensis Pb01]
          Length = 1073

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 71/192 (36%), Gaps = 33/192 (17%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI   K R      +L FVGPPG+GKT++ + +AR L   +   S
Sbjct: 535 EDHYGLKDVKDRILEFIAVGKLRGTVEGKILCFVGPPGVGKTSIGKSIARALNREYYRFS 594

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ ++    +        
Sbjct: 595 VGGLTDVAEIKGHRRTYVGALPGRVIQALKKCQTENPMILIDEVDKIGRGHQGDPASALL 654

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           + ++LS+   +        +  PL DR  I I L+ 
Sbjct: 655 ELLDPEQNSSFLD-------HYMDIPVDLSKVLFVCTANMTDTIPRPLLDRMEI-IELSG 706

Query: 183 YEIEDLKTIVQR 194
           Y  ++   I +R
Sbjct: 707 YVADEKMAIAER 718


>gi|295662841|ref|XP_002791974.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01]
 gi|226279626|gb|EEH35192.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01]
          Length = 961

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 60/298 (20%), Positives = 106/298 (35%), Gaps = 39/298 (13%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEA----------LDHVLFVGPPGLG 66
            D   +R  T E+     +    LK     +  R +A          +  +L  GPPG G
Sbjct: 643 VDAESIR-TTFEDVHAPADTIEALKTLTSLSLIRPDAFTYGVLSTDKIPGLLLYGPPGTG 701

Query: 67  KTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLS 118
           KT LA+ VAR+ G      SG  +          ++ A+ T  +     V+FIDE   + 
Sbjct: 702 KTMLAKAVARQSGATVLEVSGSEVYDMYVGEGEKNVKAIFTLAKKLSPCVVFIDEADAIF 761

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
                    A        ++ +          LS F ++ AT R   L + +  R    +
Sbjct: 762 CSR----VAASNRTTHRELINQFLREWDGMNELSAFIMV-ATNRPFDLDDAVLRRLPRRL 816

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
            ++    +D  +I++   +   +     A+ ++A  +  TP  +G  L+ +   A +A  
Sbjct: 817 LVDLPTEQDRLSILKIHLREEQVE----ASLDLAELASRTPLYSGSDLKNMCIAAALA-- 870

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAI 296
                E  + A      +       + R L             +E ISA +SE    +
Sbjct: 871 --CVNEENEQAAHHTGDEPYK--YPERRILR-----KAHFERAMEEISASISEDMSTL 919


>gi|115450773|ref|NP_001048987.1| Os03g0151800 [Oryza sativa Japonica Group]
 gi|108706222|gb|ABF94017.1| Cell division cycle protein 48, putative, expressed [Oryza sativa
           Japonica Group]
 gi|113547458|dbj|BAF10901.1| Os03g0151800 [Oryza sativa Japonica Group]
 gi|125542437|gb|EAY88576.1| hypothetical protein OsI_10049 [Oryza sativa Indica Group]
 gi|125584947|gb|EAZ25611.1| hypothetical protein OsJ_09438 [Oryza sativa Japonica Group]
 gi|215704352|dbj|BAG93786.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215704409|dbj|BAG93843.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215704637|dbj|BAG94265.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215704711|dbj|BAG94339.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 809

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/173 (25%), Positives = 64/173 (36%), Gaps = 31/173 (17%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------------VLFVGPPGLGKTTLA 71
            L+E  G  +     K   +  +     L H              +L  GPPG GKT +A
Sbjct: 203 RLDE-VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIA 261

Query: 72  QVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEE 123
           + VA E G  F   +GP I          +L       E     ++FIDEI  ++   E+
Sbjct: 262 RAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREK 321

Query: 124 ILYPAMEDFQLDLMV-GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
                       L+   +G  ARS  I      ++ AT R   +   L+ RFG
Sbjct: 322 THGEVERRIVSQLLTLMDGLKARSHVI------VMGATNRPNSIDPALR-RFG 367



 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 44/255 (17%), Positives = 83/255 (32%), Gaps = 25/255 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVARE 77
           + E+  G       L+  ++      E            VLF GPPG GKT LA+ +A E
Sbjct: 481 SWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANE 540

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
              NF S  GP +          ++  +          VLF DE+  ++      +  A 
Sbjct: 541 CQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDA- 599

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                D ++ +  +            +I AT R  ++   L    R    I +   + + 
Sbjct: 600 -GGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDDQS 658

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK-----TIT 242
              I +   + + +A   +           +      + +R   +A   + +        
Sbjct: 659 RLQIFKACLRKSPVAKDVDLNALAKYTQGFSGADITEICQRACKYAIRENIEKDIEMEKR 718

Query: 243 REIADAALLRLAIDK 257
           R+    A+    +D 
Sbjct: 719 RKDNPEAMEEDEVDD 733


>gi|120401100|ref|YP_950929.1| ATPase central domain-containing protein [Mycobacterium vanbaalenii
           PYR-1]
 gi|119953918|gb|ABM10923.1| AAA ATPase, central domain protein [Mycobacterium vanbaalenii
           PYR-1]
          Length = 574

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 61/264 (23%), Positives = 93/264 (35%), Gaps = 27/264 (10%)

Query: 31  TGQVEACSNLKVFI---EAAKARA-------EALDHVLFVGPPGLGKTTLAQVVARE-LG 79
            G       ++ +    + AK RA       +A  H++F GPPG GKTT+A+VVA    G
Sbjct: 295 IGLTRVKDQIERYRAATQMAKVRAARGMKVAQASKHMIFTGPPGTGKTTIARVVANILAG 354

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLE----DRDV-------LFIDEIHRLSIIVEEILYPA 128
           +   +    V     D  A           R +       LFIDE + L    +    P 
Sbjct: 355 LGVIAEPKLVETSRKDFVAEYEGQSAVKTARTIDRAMGGVLFIDEAYTLVQERDGRADPF 414

Query: 129 MEDFQLDLMV-GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
             +    L+   E    R V I       I    R+    + L+ RF   I  + Y  E+
Sbjct: 415 GTEALDTLLARMENDRDRLVVIIAGYSNDID---RLLETNDGLRSRFSTRIEFDSYSPEE 471

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           +  I +  A     ++TDEAA  +   +    +      +   D A          E  +
Sbjct: 472 IVDIARVIAAHNDSSLTDEAAKRVLEAATLLSQSTSNG-KPALDVAGNGRYARQLVEAGE 530

Query: 248 AALLRLAIDKMGFDQLDLRYLTMI 271
                       FD LD+  L+ I
Sbjct: 531 QTRDMRLARSPDFDTLDVEQLSEI 554


>gi|302497219|ref|XP_003010610.1| hypothetical protein ARB_03311 [Arthroderma benhamiae CBS 112371]
 gi|291174153|gb|EFE29970.1| hypothetical protein ARB_03311 [Arthroderma benhamiae CBS 112371]
          Length = 908

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 53/257 (20%), Positives = 87/257 (33%), Gaps = 23/257 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVARE 77
             ++  G  E    L   ++      E            VLF GPPG GKT LA+ VA E
Sbjct: 585 RWDDIGGLEEVKRELIESVQYPVDHPEKFLKFGLSPSKGVLFYGPPGTGKTLLAKAVANE 644

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
              NF S  GP +          ++  +          V+F+DE+  ++         A 
Sbjct: 645 CAANFISVKGPELLSMWFGESESNIRDIFDKARAAAPCVVFLDELDSIAKSRGASSGDA- 703

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                D +V +  +      +     +I AT R   L N L    R    + +      +
Sbjct: 704 -GGASDRVVNQLLTEMDGMTSKKNVFVIGATNRPEQLDNALCRPGRLDTLVYVPLPNEPE 762

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA---EVAHAKTITRE 244
              I++   + T +A   + A   +     +    G + +R    A    +A A   T+E
Sbjct: 763 RTAILKAQLRKTPVASDVDLAYIASKTHGFSGADLGFVTQRAVKLAIKESIATAIRRTKE 822

Query: 245 IADAALLRLAIDKMGFD 261
              A    +  D    D
Sbjct: 823 REAAGEDAMEDDIDDED 839



 Score = 53.9 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 43/218 (19%), Positives = 73/218 (33%), Gaps = 17/218 (7%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLED 105
           +    +L  GPPG GKT +A+ VA E G  F   +GP I          +L       E 
Sbjct: 345 KPPRGILMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEK 404

Query: 106 RD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
               ++FIDEI  ++   E+             +V +  +        S   ++AAT R 
Sbjct: 405 NSPAIIFIDEIDSIAPKREK-----TNGEVERRVVSQLLTLMDGMKARSNIVVMAATNRP 459

Query: 164 GLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRI 221
             +   L+   RF   + +   +      I+Q   K   L    +     A         
Sbjct: 460 NSIDPALRRFGRFDREVDIGIPDPTGRLEILQIHTKNMKLGEDVDLESIAAETHGYVGSD 519

Query: 222 AGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259
              L        +    K    ++ +  +    +D +G
Sbjct: 520 IASLCSEAAM--QQIREKMDLIDLDEDTIDAEVLDSLG 555


>gi|225557765|gb|EEH06050.1| ribosome biogenesis ATPase RIX7 [Ajellomyces capsulatus G186AR]
          Length = 751

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 51/213 (23%), Positives = 81/213 (38%), Gaps = 15/213 (7%)

Query: 47  AKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLE 104
           A+    A   VL  GPPG GKT LA+ VA E   NF S  GP +     G+    +  + 
Sbjct: 517 ARVGITAPTGVLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESERAVRQVF 576

Query: 105 DRD------VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIA 158
            R       V+F DE+  L    ++ L  A       L+        + +       +IA
Sbjct: 577 VRARSSVPCVIFFDELDALVPRRDDTLSEASARVVNTLLTELDGLGSARQG----IYVIA 632

Query: 159 ATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSR 216
           AT R  ++   +    R    + +N    ++   I+Q   +   +  +D+          
Sbjct: 633 ATNRPDIIDPAMLRPGRLETLLFVNLPSADERVEILQTLLRKLPIEFSDDIEGLARSCEG 692

Query: 217 GTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            +    G LLRR   ++ +    TI  E   AA
Sbjct: 693 FSGADLGSLLRRA-GYSAIKRRDTIRFEDFVAA 724



 Score = 50.1 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 51/230 (22%), Positives = 75/230 (32%), Gaps = 20/230 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
            L +  G  +    L+  +     R +            VL  GPPG GKT +A   A E
Sbjct: 175 NLADLGGVDDIIQELEDLLVLPMTRPQVYSSSKVQPPRGVLLHGPPGCGKTMIANAFAAE 234

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
           LGV F + S P I           L       +     ++FIDEI  ++    E     M
Sbjct: 235 LGVPFIAISAPSIVSGMSGESEKALREHFDEAKKVAPCLIFIDEIDAITPKR-ESAQREM 293

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
           E   +  ++         K +     ++AAT R   L   L+   RF   I L       
Sbjct: 294 EKRIVAQLLTCMDDLALEKTDGKPVIVLAATNRPDSLDAALRRGGRFDKEINLTVPSEPV 353

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
            + I+ R          D     +A R+ G        L      A +  
Sbjct: 354 REQIL-RTLTRDMNLADDLDFKLLAKRTPGFVGADLNDLVSTAGSAAIKR 402


>gi|195108363|ref|XP_001998762.1| GI24145 [Drosophila mojavensis]
 gi|229559927|sp|B4K799|SPAST_DROMO RecName: Full=Spastin
 gi|193915356|gb|EDW14223.1| GI24145 [Drosophila mojavensis]
          Length = 765

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 86/234 (36%), Gaps = 20/234 (8%)

Query: 29  EFTGQVEACSNLKVFIEAAKARAE-------ALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +  GQ  A   L+  +     R E           +L  GPPG GKT LA+ VA E    
Sbjct: 491 DIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSAT 550

Query: 82  FRSTSGPVIAK--AGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           F + S   +     GD   L+  L          ++FIDE+  L        + A    +
Sbjct: 551 FLNISAASLTSKYVGDGEKLVRALFAVARHLQPSIIFIDEVDSLLSERSSNEHEASRRLK 610

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
            + +V       + + +  R  ++AAT R   L      RF   + ++  E++  + ++ 
Sbjct: 611 TEFLVEFDGLPGNPEGD--RIVVLAATNRPQELDEAALRRFTKRVYVSLPEVQTRELLLS 668

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           R   L     +      +A  ++ T   +G  L  +   A +   + +  E   
Sbjct: 669 R---LLQKQGSPLDTEALARLAKITDGYSGSDLTALAKDAALEPIRELNVEQVK 719


>gi|145232097|ref|XP_001399512.1| lon protease [Aspergillus niger CBS 513.88]
 gi|300681030|sp|A2QCJ2|LONM_ASPNC RecName: Full=Lon protease homolog, mitochondrial; Flags: Precursor
 gi|134056423|emb|CAL00590.1| unnamed protein product [Aspergillus niger]
          Length = 1113

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 52/261 (19%), Positives = 91/261 (34%), Gaps = 38/261 (14%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI   K R      +L  VGPPG+GKT++ + +AR L   +   S
Sbjct: 575 EDHYGLKDVKDRILEFIAVGKLRGTVEGKILCLVGPPGVGKTSIGKSIARALNRQYYRFS 634

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDEI ++    +        
Sbjct: 635 VGGLTDVAEIKGHRRTYVGALPGRIIQALKKCQTENPLILIDEIDKIGRGHQGDPSSALL 694

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V ++LS+   +        +  PL DR  + I L+ 
Sbjct: 695 ELLDPEQNSSFLD-------HYMDVPVDLSKVLFVCTANVTDTIPRPLLDRMEL-IELSG 746

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  ++   I QR       A       E+      T      L++     + V + K   
Sbjct: 747 YVADEKMAIAQRYLA--PAARELTGLKEV--DVNLTEEAVEELIKSYCRESGVRNLKKQI 802

Query: 243 REIADAALLRLAIDKMGFDQL 263
            ++   A  ++  D +G D L
Sbjct: 803 EKVYRKAAYKIVRD-LGEDVL 822


>gi|86141413|ref|ZP_01059959.1| moxR protein [Leeuwenhoekiella blandensis MED217]
 gi|85831972|gb|EAQ50427.1| moxR protein [Leeuwenhoekiella blandensis MED217]
          Length = 330

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 51/253 (20%), Positives = 89/253 (35%), Gaps = 36/253 (14%)

Query: 30  FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPV 89
             GQ E    L +   A         H L  G PGL KT + + +A+ + + F+      
Sbjct: 30  IIGQEETVEQLLITFLAG-------GHALLEGVPGLAKTLMIRTLAQAIDLKFKRIQFTP 82

Query: 90  IAKAGDLAALLTNLEDRD----------------VLFIDEIHRLSIIVEEILYPAMEDFQ 133
                D+       ED+                 ++  DEI+R     +  L  AM++F+
Sbjct: 83  DLMPSDIIGTEILEEDQTTGKKFFEFNKGPIFSNIILADEINRTPPKTQAALLEAMQEFE 142

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPL----QDRFGIPIRLNFYEIEDLK 189
           +        S ++  ++   F L          T PL    QDRF + IR+ +    +  
Sbjct: 143 VTY------SGKTYALDKPFFILATQNPIEQSGTFPLPEAQQDRFLLYIRIGYPTEAEET 196

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPR---IAGRLLRRVRDFAEVAHAKTITREIA 246
           TI++         V    + E  +R +   R   I+  L+ +V         +T + E  
Sbjct: 197 TILKATTSSKKTKVESVLSGEEIIRLQQLVREIPISDELISKVSKIIRATRPETTSDEYV 256

Query: 247 DAALLRLAIDKMG 259
              +   A  + G
Sbjct: 257 KQWVSWGAGPRAG 269


>gi|319406562|emb|CBI80204.1| DNA polymerase III, subunits gamma and tau [Bartonella sp. 1-1C]
          Length = 604

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/238 (18%), Positives = 83/238 (34%), Gaps = 21/238 (8%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+   +  GQ      L       +         +  G  G+GKTT A++++R L
Sbjct: 11  ARKYRPQNFSDLIGQEAMVRTLNNAFTTGRIAQAW----MLTGIRGVGKTTTARILSRAL 66

Query: 79  GVNFRSTSGPV--IAKAGDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
               +    P       G+  A +      DV+ +D      I  +  I+E+I Y  +  
Sbjct: 67  NYKTKDIDQPTTLFDTLGEHCAQIIEGRHIDVVEMDAASHTGIDDIREIIEQIRYRPVSA 126

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT +  +   +  R      L  
Sbjct: 127 RYKVYIIDEVHMLSTQAFNGLLKTLEEPPPHVKFIFATTEIRKVPITILSRCQ-RFNLQR 185

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            E   L   +++ ++L  +   D+A   IA  + G+ R A  +  +   ++      T
Sbjct: 186 VETTALVAHLRKISQLEKVEAQDQALFMIARAAEGSVRDALSIFDQAIAYSNGKVDTT 243


>gi|260462019|ref|ZP_05810264.1| DNA polymerase III, subunits gamma and tau [Mesorhizobium
           opportunistum WSM2075]
 gi|259032266|gb|EEW33532.1| DNA polymerase III, subunits gamma and tau [Mesorhizobium
           opportunistum WSM2075]
          Length = 597

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 51/258 (19%), Positives = 91/258 (35%), Gaps = 25/258 (9%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           +   +         RP    E  GQ      +   +  A A        +  G  G+GKT
Sbjct: 6   NEKAAAYRVLARKYRPSNFSELVGQE----PMVRTLTNAFATGRIAQAWMLTGVRGVGKT 61

Query: 69  TLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRDVLFID-----EIHRLSIIV 121
           T A+++AR L     +   P +  A  G+    +      DV+ +D      I  +  I+
Sbjct: 62  TTARILARALNYKTATVDQPSVDLAVLGEHCQAIMEGRHVDVIEMDAASHTGIDDIRDII 121

Query: 122 EEILYPAMEDFQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E + Y  +       ++ E             ++++        I ATT +  +   +  
Sbjct: 122 ERVRYAPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPPHVKFIFATTEIRKVPITVLS 181

Query: 173 RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           R      L   +   L   +   A   G++V D+A   IA  + G+ R +  +L    D 
Sbjct: 182 RCQ-RFDLRRIDAGALVAHLSSIAGKEGISVDDDALAMIARAAEGSARDSLSIL----DQ 236

Query: 233 AEVAHAKTITREIADAAL 250
           A    A +++ E   A L
Sbjct: 237 AIAHGAGSVSAEAVRAML 254


>gi|254580125|ref|XP_002496048.1| ZYRO0C09262p [Zygosaccharomyces rouxii]
 gi|238938939|emb|CAR27115.1| ZYRO0C09262p [Zygosaccharomyces rouxii]
          Length = 830

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 48/256 (18%), Positives = 89/256 (34%), Gaps = 22/256 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
           +  +  G  E    L+  +E      +            VLF GPPG GKT LA+ VA E
Sbjct: 485 SWADVGGLEEIKEELRETVEYPVLHPDQYTKFGLAPSKGVLFYGPPGTGKTLLAKAVATE 544

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAM 129
           +  NF S  GP +          ++  +          V+F+DE+  ++      +  A 
Sbjct: 545 VSANFISVKGPELLSMWYGESESNIRDIFDKARAAAPTVVFLDELDSIAKARGGSVGDA- 603

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
                D +V +  +            +I AT R   +   +     +   +     ++  
Sbjct: 604 -GGASDRVVNQLLTEMDGMNTKKNVFVIGATNRPDQIDPAILRPGRLDQLIYVPLPDEAA 662

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            +    A+L    +      E++  ++ T   +G  L  +   A    A   + E    A
Sbjct: 663 RLGIMKAQLRKTPLEP--GLELSQLAKVTQGFSGADLSYIVQRAA-KFAIKDSIEAHRQA 719

Query: 250 LLRLAIDKMGFD-QLD 264
             +  +   G D ++D
Sbjct: 720 EAKKEVKTEGEDVEMD 735



 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/132 (26%), Positives = 54/132 (40%), Gaps = 14/132 (10%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLED 105
           +    VL  GPPG GKT +A+ VA E G  F   +GP +          +L       E 
Sbjct: 246 KPPRGVLMYGPPGTGKTLMARAVANETGAFFFLINGPEVMSKMAGESESNLRKAFEEAEK 305

Query: 106 R--DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
               ++FIDEI  ++   ++             +V +  +      + S   +IAAT R 
Sbjct: 306 NAPAIIFIDEIDSIAPKRDK-----TNGEVERRVVSQLLTLMDGMKSRSNVVVIAATNRP 360

Query: 164 GLLTNPLQDRFG 175
             +   L+ RFG
Sbjct: 361 NSIDPALR-RFG 371


>gi|238880253|gb|EEQ43891.1| protein AFG2 [Candida albicans WO-1]
          Length = 766

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 46/218 (21%), Positives = 78/218 (35%), Gaps = 35/218 (16%)

Query: 20  SLLR------PR-TLEEFTGQVEACSNLKVFIEAAKARAEALDH-----------VLFVG 61
           S +R      P+    +  GQ E     +  IE  +   EA D            VL  G
Sbjct: 484 SAMREIFLEMPKVHWSDIGGQEELK---RKLIEVVQLPLEASDSFKNLGVSSPKGVLLYG 540

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DVLFIDE 113
           PPG  KT  A+ +A E G+NF +  GP I     G+    +  +  +       ++F DE
Sbjct: 541 PPGCSKTLTAKALATESGLNFLAVKGPEIFNKYVGESERAIREIFRKARAASPSIIFFDE 600

Query: 114 IHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD- 172
           I  ++   +           L  ++ E          L    ++ AT +   +   L   
Sbjct: 601 IDAIAGDRDGDSSTTAASNVLTSLLNEIDGVE----ELKGVVIVGATNKPTEIDPALLRP 656

Query: 173 -RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAAC 209
            R    I +   + +    I+Q+ ++   L   DE+  
Sbjct: 657 GRLDRHIYVAPPDYDARLQILQKCSRKFNLQSGDESVD 694



 Score = 52.4 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 76/223 (34%), Gaps = 23/223 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEA--------AKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           T ++  G  +    LK  IE         +         +L  GPPG GKT L + VA  
Sbjct: 227 TYDQVGGLSKQIELLKSTIELPLNNPTLFSDFGISPPRGILLHGPPGTGKTMLLRCVANS 286

Query: 78  L-GVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPA 128
           +   +  + +GP I           +  +    +     ++F+DEI  ++          
Sbjct: 287 ITEAHVLTINGPSIVSKYLGETENAIRDIFNEAKKFQPSIIFMDEIDSIAPSRTSD---- 342

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
                   +V +  +      +  R  ++ AT R   + + L+   RF   + +   ++E
Sbjct: 343 DSGETESRVVAQLLTVMDGMGDNGRIVVVGATNRPNSIDSALRRPGRFDQEVEIGIPDVE 402

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
             + I+ +               EIA  +  T    G  L  +
Sbjct: 403 AREEILTKQFAKMNSEKCQITKKEIASIASKTHGYVGADLTAL 445


>gi|302805609|ref|XP_002984555.1| hypothetical protein SELMODRAFT_423688 [Selaginella moellendorffii]
 gi|300147537|gb|EFJ14200.1| hypothetical protein SELMODRAFT_423688 [Selaginella moellendorffii]
          Length = 1241

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 52/242 (21%), Positives = 83/242 (34%), Gaps = 25/242 (10%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT 69
            +  Q  +     RP+T  +  GQ     +L      A  R   +   LF GP G GK++
Sbjct: 493 SDFRQNKSLSYKYRPKTFRDMVGQNVVMQSL----ANAVLRGRIVSLYLFQGPRGTGKSS 548

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLT-NLEDR-DVLFID-----EIHRLSIIVE 122
            A+V A  L       S   +   G     +  NL    DV   D      +  +  ++E
Sbjct: 549 AARVFAAALNC----LSSEELRPCGLCRECVALNLGKSLDVREFDASRFNGLGSVKELLE 604

Query: 123 EILYPAMEDFQLDLMVGE--GPSARSVKINLS-------RFTLIAATTRVGLLTNPLQDR 173
             + P         +V E    +A S    L           +I  T+    L   L  R
Sbjct: 605 VAILPPSSGRYRLSVVDEVHTLTAESWNFFLKGMEELPGNSIVILITSNPEQLPRTLGSR 664

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
                     + + +   +Q+ A    + +  EA   IA RS G+ R A   L ++    
Sbjct: 665 CQKYPFTKLKDPDIISR-LQKLATKENIDIEIEALELIASRSNGSLRDAEMTLDQLGLLG 723

Query: 234 EV 235
           +V
Sbjct: 724 QV 725


>gi|295671887|ref|XP_002796490.1| AAA family ATPase [Paracoccidioides brasiliensis Pb01]
 gi|226283470|gb|EEH39036.1| AAA family ATPase [Paracoccidioides brasiliensis Pb01]
          Length = 754

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/308 (14%), Positives = 94/308 (30%), Gaps = 40/308 (12%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFT------------GQVEACSNLKVFIEAAK 48
           M+  E LL  +       +   RP  + E              GQ +    L+  +E   
Sbjct: 447 MIPDENLLQIDDIDISLALQETRPTAMREVFLETPKVRWSDIGGQHKIKRRLQKAVERPL 506

Query: 49  ARAEALD--------HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAA 98
              + +          +L  GPPG  KT   + +A E G+NF +  G  I     G+   
Sbjct: 507 KFPDRMKRLNISGKKGILLYGPPGCSKTLTVKALATEAGLNFLAVKGAEILSMYVGESER 566

Query: 99  LLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152
            L  +  +       ++F DEI  ++               ++++     +       L 
Sbjct: 567 ALREIFRKARSASPSIIFFDEIDAIAARRSNG----PSQGGINVLTTL-LNEMDGIEELK 621

Query: 153 RFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACE 210
              ++AAT +  +L   L    R    + +   + +  K I++     + +    +    
Sbjct: 622 NVLVVAATNKPEVLDPALMRPGRLDNILYVGPPDFQARKEILKIWFSKSEVDDEVDIDRL 681

Query: 211 IAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTM 270
             +    +      +     D A     +T   +            +   +Q+  +    
Sbjct: 682 AQVTDGYSGAEMVSICETAADSALDEEEETGLEQKIAW-----RHFEHALNQVHKQISEA 736

Query: 271 IARNFGGG 278
           +   +   
Sbjct: 737 VIEGYERW 744


>gi|218135109|ref|ZP_03463913.1| hypothetical protein BACPEC_03014 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990494|gb|EEC56505.1| hypothetical protein BACPEC_03014 [Bacteroides pectinophilus ATCC
           43243]
          Length = 652

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 58/258 (22%), Positives = 100/258 (38%), Gaps = 26/258 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDHV--------LFVGPPGLGKTTLAQVVARE 77
           T  +  GQ EA  +L   ++      +   H+        L VGPPG GKT LA+ VA E
Sbjct: 181 TFRDVAGQDEAKESLTEIVD-FLHNPDKYSHIGAKLPKGALLVGPPGTGKTLLAKAVAGE 239

Query: 78  LGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
             V F S SG       V   A  +  L    +     ++FIDEI  +    +  +    
Sbjct: 240 AKVPFFSLSGSDFVEMFVGVGASRVRDLFKQAQQSAPCIIFIDEIDAIGKSRDSKMGGND 299

Query: 130 E-DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           E +  L+ ++ E     + K       ++AAT R  +L   L    RF   I ++  +++
Sbjct: 300 EREQTLNQLLSEMDGFDASKG----IFILAATNRPDVLDKALLRPGRFDRRIIVDKPDLK 355

Query: 187 -DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
             + T+      +      D  A  +A        +A  ++      A  A  K ++++ 
Sbjct: 356 GRIDTLKVHSKGVLMDDTVDLEAIALATSGAVGSDLAN-MINEAAIMAVKAGRKYVSQKD 414

Query: 246 ADAALLRLAIDKMGFDQL 263
              A+  +   K   D++
Sbjct: 415 LFEAVEVVIAGKEKKDRI 432


>gi|212543967|ref|XP_002152138.1| mitochondrial serine protease Pim1, putative [Penicillium marneffei
           ATCC 18224]
 gi|210067045|gb|EEA21138.1| mitochondrial serine protease Pim1, putative [Penicillium marneffei
           ATCC 18224]
          Length = 1072

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 48/268 (17%), Positives = 88/268 (32%), Gaps = 38/268 (14%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI   K R      +L  VGPPG+GKT++ + +AR L   +   S
Sbjct: 577 EDHYGLKDVKDRILEFIAVGKLRGSVEGKILCLVGPPGVGKTSIGKSIARALNRQYYRFS 636

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ ++    +        
Sbjct: 637 VGGLTDVAEIKGHRRTYVGALPGRIIQALKKCQTENPLILIDEVDKIGRGHQGDPASALL 696

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V ++LS+   +        +  PL DR  +     +
Sbjct: 697 ELLDPEQNSSFLD-------HYMDVPVDLSKVLFVCTANVTDTIPRPLLDRMELIELSGY 749

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
              E +       A         E +    +           L++     + V + K   
Sbjct: 750 VADEKMA-----IADKYLAPAAKELSGLKDVDVCLQEDAIEELIKFYCRESGVRNLKKQI 804

Query: 243 REIADAALLRLAIDKMGFDQLDLRYLTM 270
            ++   A L++  D +G D L    LT 
Sbjct: 805 EKVYRKAALKIVQD-LGEDALPEEALTT 831


>gi|207723139|ref|YP_002253538.1| dna polymerase III subunits tau and gamma protein (partial sequence
           n terminus) [Ralstonia solanacearum MolK2]
 gi|206588332|emb|CAQ35295.1| probable dna polymerase III subunits tau and gamma protein (partial
           sequence n terminus) [Ralstonia solanacearum MolK2]
          Length = 513

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 56/190 (29%), Gaps = 43/190 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGV- 80
           RPR      GQ      L   +E      + L H  LF G  G+GKTTL++++A+ L   
Sbjct: 7   RPRDFTTLVGQEHVVKALTHALE-----QQRLHHAYLFTGTRGVGKTTLSRILAKSLNCI 61

Query: 81  ----------------------------NFRSTSGPVIAKAGDLAALLTN------LEDR 106
                                       ++            ++A LL            
Sbjct: 62  GTDGQGGITAQPCGVCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDRAVYAPTAGRF 121

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164
            V  IDE+H L+      +   +E+    +  ++      +     LSR           
Sbjct: 122 KVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPP 181

Query: 165 LLTNPLQDRF 174
                  DR 
Sbjct: 182 GHIVSHLDRI 191


>gi|159029215|emb|CAO87575.1| ftsH [Microcystis aeruginosa PCC 7806]
          Length = 654

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 53/265 (20%), Positives = 90/265 (33%), Gaps = 27/265 (10%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAKAR-------AEALDHVLFVGPPGLGKTTLAQVVAR 76
           P T  +  G  EA + LK  +E  K         A     VL VGPPG GKT LA+ VA 
Sbjct: 200 PITFSDVAGAEEAKTELKEIVEFLKDAERFNKIGARIPKGVLLVGPPGTGKTLLAKAVAG 259

Query: 77  ELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPA 128
           E GV F S S            A  +  L    +     ++FIDE+  +          +
Sbjct: 260 EAGVTFFSISASEFVELFVGTGAARVRDLFAQAKKNAPSIIFIDELDAIGKSRSSGSGTS 319

Query: 129 M----EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNF 182
                 +  L+ ++ E       +       ++AAT R   L   L    RF   + ++ 
Sbjct: 320 GSNDEREQTLNQLLTEMDGFSPKEAV---VIVLAATNRPETLDAALLRPGRFDRQVLVDR 376

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            ++     I++  A+   +                       L+      A   + + ++
Sbjct: 377 PDLAGRLAILEIYAQRVQMGEDVNLKAIATQTPGFAGADLANLVNEAALLAARNNREKVS 436

Query: 243 REIADAALLRLAIDKMGFDQLDLRY 267
           +     A+ R+     G ++     
Sbjct: 437 QIDFKEAIERVIA---GLEKKSRVL 458


>gi|153004905|ref|YP_001379230.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter sp. Fw109-5]
 gi|152028478|gb|ABS26246.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter sp. Fw109-5]
          Length = 687

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 61/264 (23%), Positives = 96/264 (36%), Gaps = 32/264 (12%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  EA   L+  +E  K               VL VGPPG GKT LA+  A E 
Sbjct: 194 TFQDVAGIDEAVEELQEIVEFLKTPEKYRRLGGRIPKGVLLVGPPGTGKTLLARATAGEA 253

Query: 79  GVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           GV F S SG            A+  DL A  T  +   ++FIDE+  L       +    
Sbjct: 254 GVPFFSLSGSEFVEMFVGVGAARVRDLFAQATQ-KAPCIVFIDELDALGKSRNSGVVGGH 312

Query: 130 EDFQLD----LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183
           ++ +      L   +G  AR+  I      ++ AT R  +L   L    RF   + ++  
Sbjct: 313 DEREQTLNQLLAEMDGFDARASLI------VMGATNRPEILDPALMRPGRFDRQVLVDRP 366

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           +    + I+Q  AK   L    +                  ++      A   +   +TR
Sbjct: 367 DKRGREKILQIHAKNVKLGADVDLRSIAVRTPGFAGADLANVVNEAALLAARRNKSAVTR 426

Query: 244 EIADAALLRLAIDKMGFDQLDLRY 267
              + A+ R+     G ++   R 
Sbjct: 427 SEFEEAIERVVA---GLEKKSRRI 447


>gi|11095437|gb|AAG29874.1| valosin-containing protein [Homo sapiens]
          Length = 305

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/235 (18%), Positives = 82/235 (34%), Gaps = 34/235 (14%)

Query: 2   MDREGLLSRNVSQED-------ADISLLR------PR-TLEEFTGQVEACSNLKVFIEAA 47
           +D E + S   + +D       ++ S LR      P+ T E+  G  +    L+  ++  
Sbjct: 65  IDAEVMNSLAATMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYP 124

Query: 48  KARAEAL--------DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKA 93
               +            VLF GPPG GKT LA+ +A E   NF S  GP +         
Sbjct: 125 VEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESE 184

Query: 94  GDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINL 151
            ++  +          VLF DE+  ++                D ++ +  +        
Sbjct: 185 ANVREIFDKARQAAPCVLFFDELDSIAKARGGN--IGDGGGAADRVINQILTEMDGMSTK 242

Query: 152 SRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVT 204
               +I AT R  ++   +    R    I +   + +    I++   + + +   
Sbjct: 243 KNVFIIGATNRPDIIDPAILRPGRPDQLIYIPLPDEKSRVAILKANLRKSPVPRM 297


>gi|254456249|ref|ZP_05069678.1| DNA-directed DNA polymerase gamma/tau subunit [Candidatus
           Pelagibacter sp. HTCC7211]
 gi|207083251|gb|EDZ60677.1| DNA-directed DNA polymerase gamma/tau subunit [Candidatus
           Pelagibacter sp. HTCC7211]
          Length = 556

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 48/237 (20%), Positives = 74/237 (31%), Gaps = 54/237 (22%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RP+  ++  GQ      +   I+A K         LF G  G+GKTT A++VA+ L  + 
Sbjct: 13  RPQVFDDLIGQEVVAETITNSIKADKIPNAY----LFTGIRGIGKTTTARIVAKGLNCSK 68

Query: 83  RSTS-------------------------GPVIAKAGDLAALLT------NLEDRDVLFI 111
              +                                 D+  L+             +  I
Sbjct: 69  GIENLCKKDLCENCKSIADASHIDVLEMDAASKTGVDDVRDLIEFSRYGPTSAKYKIFII 128

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DE+H LS      L   +E+                    +    I ATT +  +   + 
Sbjct: 129 DEVHMLSKQAFNALLKTLEE------------------PPAYLKFIFATTEIKKIPITVV 170

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            R            E  + I ++        V+DEA   I   S G+ R A  LL R
Sbjct: 171 SRCQRFDLSRIKSTELFEFI-KKIKDKENGNVSDEALKLIVKISEGSVRDALSLLDR 226


>gi|196250172|ref|ZP_03148866.1| ATP-dependent protease La [Geobacillus sp. G11MC16]
 gi|196210356|gb|EDY05121.1| ATP-dependent protease La [Geobacillus sp. G11MC16]
          Length = 775

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 46/219 (21%), Positives = 80/219 (36%), Gaps = 36/219 (16%)

Query: 55  DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA------------ALLTN 102
             +   GPPG+GKT+LA+ +A+ LG  F   S   +    ++              ++  
Sbjct: 349 PILCLAGPPGVGKTSLARSIAKALGRRFVRMSLGGVRDESEIRGHRRTYVGAMPGRIIQG 408

Query: 103 LED----RDVLFIDEIHRLSI--------IVEEILYPAMEDFQLDLMVGEGPSARSVKIN 150
           ++       V  +DEI ++S          + E+L P       D  + E         +
Sbjct: 409 MKKAGTINPVFLLDEIDKMSSDFRGDPSAAMLEVLDPEQNHTFSDHYIEE-------PYD 461

Query: 151 LSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACE 210
           LS+   IA    +  +  PL DR  I     + E+E L  I +R   L    + +    +
Sbjct: 462 LSKVMFIATANNLATIPQPLLDRMEIIHIPGYTEVEKL-HIAKR--HLLPKQLAEHGLKK 518

Query: 211 IAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            A++ R        ++R     A V   +     I   A
Sbjct: 519 AALQVRDDA--MLDIIRHYTREAGVRELERQLAAICRKA 555


>gi|167630882|ref|YP_001681381.1| ATPase, aaa family [Heliobacterium modesticaldum Ice1]
 gi|167593622|gb|ABZ85370.1| ATPase, aaa family [Heliobacterium modesticaldum Ice1]
          Length = 331

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/206 (20%), Positives = 74/206 (35%), Gaps = 16/206 (7%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLE-DRDVL 109
           VLF GPPG GKT  AQ +A E+G+         +        A ++  +    + D  V+
Sbjct: 124 VLFYGPPGCGKTLAAQTLASEIGIPMLYVRFDALISSYLGETASNIRKVFDYAKNDSWVI 183

Query: 110 FIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           F DE   +     +    A E  ++  +V      + +     R  +IAAT     L   
Sbjct: 184 FFDEFDAIGRSRND----ASEHGEIKRVV--NAFLQQLDNYKGRSLVIAATNFEQSLDYA 237

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSR-GTPRIAGRLLRR 228
           +  RF   IR +    E  + I      +      D    +   R    +     ++ + 
Sbjct: 238 IWRRFDETIRFDMPTNE--EKIALFALNMKRFKGPDHVFEQYMERMHAFSHADVEKVCQF 295

Query: 229 VRDFAEVAHAKTITREIADAALLRLA 254
           +     +   K  T++  D A+ +  
Sbjct: 296 IMKQCILEGRKIYTKKDVDYAVSKQE 321


>gi|126696141|ref|YP_001091027.1| FtsH ATP-dependent protease-like protein [Prochlorococcus marinus
           str. MIT 9301]
 gi|126543184|gb|ABO17426.1| FtsH ATP-dependent protease-like protein [Prochlorococcus marinus
           str. MIT 9301]
          Length = 637

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 61/273 (22%), Positives = 100/273 (36%), Gaps = 23/273 (8%)

Query: 27  LEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVARELG 79
            ++  G  EA  +L+  +   K         A     VL VGPPG GKT LA+ +A E G
Sbjct: 180 FDDVAGVNEAKQDLQEVVTFLKKPEKFTSVGARIPKGVLLVGPPGTGKTLLAKAIAGEAG 239

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMED 131
           V F S SG           A  +  L    ++    ++FIDEI  +       +    ++
Sbjct: 240 VPFFSLSGSEFVEMFVGVGASRVRDLFKKAKENSPCLIFIDEIDAVGRQRGAGIGGGNDE 299

Query: 132 FQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            +  L  ++ E           S   +IAAT R  +L + L    RF   + ++  +I+ 
Sbjct: 300 REQTLNQLLTEMDGFEGN----SGIIIIAATNRPDVLDSALMRPGRFDRQVTVDAPDIKG 355

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
             +I++  A+   L                T      LL             +I+    D
Sbjct: 356 RLSILEVHARNKKLDGDLTLESIARRTPGFTGADLANLLNEAAILTARRRKDSISISEID 415

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV 280
            ++ R+     G    D R   +IA +  G  +
Sbjct: 416 DSVDRIVAGMEGSPLTDGRSKRLIAYHEVGHAL 448


>gi|157876732|ref|XP_001686709.1| Transitional endoplasmic reticulum ATPase; valosin-containing
           protein homolog [Leishmania major
 gi|68129784|emb|CAJ09090.1| putative Transitional endoplasmic reticulum ATPase [Leishmania
           major strain Friedlin]
          Length = 784

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 52/260 (20%), Positives = 94/260 (36%), Gaps = 40/260 (15%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHV--------LFVGPPGLGKTTLAQVVARELG 79
           ++  G  +  + ++  +E      E   ++        L  GPPG GKT +A+ VA E G
Sbjct: 194 DDIGGCRKQLNQIREMVELPIRHPELFKNIGIKPPRGILLYGPPGSGKTLIARAVANETG 253

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAMED 131
             F   +GP I          +L       E     ++FIDEI  ++   E+      + 
Sbjct: 254 AFFFLINGPEIMSKMAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREK-----AQG 308

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
                +V +  +      + S+  ++AAT R   +   L+   RF   + +   +     
Sbjct: 309 EVEKRIVSQLLTLMDGMKSRSQVIVMAATNRPNTIDPALRRFGRFDRELDIGVPDETGRL 368

Query: 190 TIVQRGAKLTGLAVT--------DEAACEIAMRSRGTPRIAGRLLRRVRDF--------- 232
            I++   K   LA          D      A  ++     A + +R              
Sbjct: 369 EIIRIHTKNMKLADDIDLEKVAKDSHGFVGADLAQLCTEAAMQCIREKLSIIDWEDDTID 428

Query: 233 AEVAHAKTITREIADAALLR 252
           AEV +A  +T+E    A+ +
Sbjct: 429 AEVMNAMCVTQEHFREAMAK 448



 Score = 52.8 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 88/249 (35%), Gaps = 24/249 (9%)

Query: 28  EEFTGQVEACSNLKVFIEAA--------KARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           E+  G ++    L+  ++          K        VLF GPPG GKT LA+ +A E  
Sbjct: 467 EDVGGLLDVKRELQELVQYPVEYPWKFEKYGMSPPKGVLFYGPPGCGKTLLAKAIATECQ 526

Query: 80  VNFRSTSGPVIAKA--GDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAMED 131
            NF S  GP +     G+  A + ++ D+       VLF DE+  ++           + 
Sbjct: 527 ANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCVLFFDELDSVAKSR----GAHGDG 582

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
              D ++ +  +            +I AT R  +L   +    R    I +   +     
Sbjct: 583 GASDRVINQILTEMDGMNVKKNVFIIGATNRPDVLDPAIMRPGRLDQLIYIPLPDKASRV 642

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA--EVAHAKTITREIAD 247
            I++   + + LA   +     A     +      + +R    A  E  + +    E+  
Sbjct: 643 AIIKASFRKSPLASDVDVDQIAAATHGFSGADLSGICQRACKMAIRESINKEIQLEELKK 702

Query: 248 AALLRLAID 256
           +  L    D
Sbjct: 703 SGQLDENAD 711


>gi|15611722|ref|NP_223373.1| DNA polymerase III subunits gamma and tau [Helicobacter pylori J99]
 gi|4155207|gb|AAD06231.1| DNA POLYMERASE III SUBUNITS GAMMA AND TAU [Helicobacter pylori J99]
          Length = 582

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 78/256 (30%), Gaps = 59/256 (23%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA------- 75
           RP+   E  GQ      L + ++  +         LF G  G GKT+ +++ A       
Sbjct: 9   RPKHFSELVGQESVAKTLSLALDNQRLANAY----LFSGLRGSGKTSSSRIFARALMCKT 64

Query: 76  -----------------RELGVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFID 112
                                ++     G       D+  L+             +  ID
Sbjct: 65  GPKAVPCDTCIQCQSALNNHHIDIIEMDGASNRGIDDVRNLIEQTRYKPSFGRYKIFIID 124

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H  +      L   +E+                    S    + ATT    L   +  
Sbjct: 125 EVHMFTTEAFNALLKTLEE------------------PPSHVKFLLATTDALKLPATILS 166

Query: 173 R---FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           R   F          I  LKTI++       ++    A  ++A   +G+ R    LL + 
Sbjct: 167 RTQHFRFKKIPENSVISHLKTILE----KEQVSYESSALEKLAHSGQGSLRDTITLLEQA 222

Query: 230 RDFAEVAHAKTITREI 245
            ++ + A  ++   E+
Sbjct: 223 INYCDNAITESKVAEM 238


>gi|325997588|gb|ADZ49796.1| DNA polymerase III subunits gamma and tau [Helicobacter pylori
           2017]
          Length = 591

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 79/256 (30%), Gaps = 59/256 (23%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA------- 75
           RP+   E  GQ      L + ++  +         LF G  G GKT+ +++ A       
Sbjct: 9   RPKHFSELVGQESVAKTLSLALDNQRLANAY----LFSGLRGSGKTSSSRIFARALMCET 64

Query: 76  -----------------RELGVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFID 112
                                ++     G       D+  L+             +  ID
Sbjct: 65  GPKAVPCDTCIQCQSALNNHHIDIIEMDGASNRGIDDVRNLIEQTRYKPSFGRYKIFIID 124

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H  +      L   +E+                    S    + ATT    L   +  
Sbjct: 125 EVHMFTTEAFNALLKTLEE------------------PPSHVKFLLATTDALKLPATILS 166

Query: 173 R---FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           R   F          I  LKTI++       ++  + A  ++A   +G+ R    LL + 
Sbjct: 167 RTQHFRFKKIPENSVISHLKTILE----KEQVSYENSALEKLAHSGQGSLRDTITLLEQA 222

Query: 230 RDFAEVAHAKTITREI 245
            ++ + A  ++   E+
Sbjct: 223 INYCDNAITESKVAEM 238


>gi|317056315|ref|YP_004104782.1| ATP-dependent metalloprotease FtsH [Ruminococcus albus 7]
 gi|315448584|gb|ADU22148.1| ATP-dependent metalloprotease FtsH [Ruminococcus albus 7]
          Length = 663

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 59/243 (24%), Positives = 89/243 (36%), Gaps = 23/243 (9%)

Query: 26  TLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  E    LK  +       + A+  A     VL +GPPG GKT LA+ VA E 
Sbjct: 170 TFADVAGADEEKEELKEIVDFLKDNRKYAEIGARIPKGVLLLGPPGTGKTLLARAVAGEA 229

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  L    +     ++FIDEI  +       L    +
Sbjct: 230 NVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKSAPAIIFIDEIDAVGRQRGAGLGGGHD 289

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E       +       ++AAT R  +L   L    RF   I +N+ +I+
Sbjct: 290 EREQTLNQLLVEMDGFEDNES----VIVMAATNRRDILDPALLRPGRFDRQILVNYPDIK 345

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++   K   LA               T      L       A   + K IT+   
Sbjct: 346 GREDILKVHTKNKPLAPDVSLETIAKTTVGFTGADLENLANEASLLAARKNKKAITKADM 405

Query: 247 DAA 249
           + A
Sbjct: 406 EEA 408


>gi|290992238|ref|XP_002678741.1| predicted protein [Naegleria gruberi]
 gi|284092355|gb|EFC45997.1| predicted protein [Naegleria gruberi]
          Length = 677

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 85/229 (37%), Gaps = 35/229 (15%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTL------------EEFTGQVEACSNLKVFIEAAK 48
           + + + ++S +    +  +  +RP  +            ++  GQ      LK  IE   
Sbjct: 375 LEEEQSMISLDYEFFENALVHVRPSAIRHILVEVPKVYWDDIGGQDNVKQALKESIEWPF 434

Query: 49  ARAE--------ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLAA 98
             +E        A   VL  GPPG  KT +A+ +A E  +NF +  GP +     G+   
Sbjct: 435 KHSEHFKRMKIRAPRGVLLYGPPGCSKTLMAKALATEAKLNFLAVRGPELFSKWVGESER 494

Query: 99  LLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152
            +  +  +       ++F DEI  L +        +  +   D ++ +          L 
Sbjct: 495 AVQQIFSKARQAAPSIIFFDEIDGLGVER-----GSGGNSVGDRVLSQLLQELDGIDPLQ 549

Query: 153 RFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLT 199
             T+IAAT R  LL   L    R    + ++  +    + IV+   K  
Sbjct: 550 GVTVIAATNRPDLLDKALLRPGRIDRMLYVSPPDEAARREIVKIQLKKM 598


>gi|255514296|gb|EET90556.1| AAA ATPase central domain protein [Candidatus Micrarchaeum
           acidiphilum ARMAN-2]
          Length = 435

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/182 (20%), Positives = 63/182 (34%), Gaps = 22/182 (12%)

Query: 11  NVSQEDADISLLRP----RTLEEFTGQVEACS--------NLKVFIEAAKARAEALDHVL 58
            +  E   I  L+P     T  +  G     S         L      +K   +     +
Sbjct: 92  EIDAETEKILRLKPMISHTTFNDVVGLEHIKSYVQKNIIYPLANTDSFSKYHQKIGASFI 151

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLEDRD--VLF 110
             GPPG GKT LA+ +A  +GV F +     +        A ++ A+          +LF
Sbjct: 152 LYGPPGNGKTLLAKAIAGSVGVPFINIESATLKGQYQGVTAKNVKAVFEQARAISPCILF 211

Query: 111 IDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFT--LIAATTRVGLLTN 168
            DE   L+   E +   +      DL+         +    S  T  ++ +T R  +L +
Sbjct: 212 FDEFEHLAQKRENLSGDSRHGGTSDLLSAINTMLTELDGAASNETIFIVGSTNRPWMLDS 271

Query: 169 PL 170
            +
Sbjct: 272 AI 273


>gi|154151966|ref|YP_001405584.1| AAA family ATPase, CDC48 subfamily protein [Candidatus
           Methanoregula boonei 6A8]
 gi|154000518|gb|ABS56941.1| AAA family ATPase, CDC48 subfamily [Methanoregula boonei 6A8]
          Length = 805

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/151 (24%), Positives = 62/151 (41%), Gaps = 14/151 (9%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDR--- 106
           E    VL  GPPG GKT +A+ VA E G NF    GP  +    G+    +  +  +   
Sbjct: 490 EPPKGVLLFGPPGTGKTLIAKAVASESGANFIPVRGPQLLSKWVGESERAVREIFKKARQ 549

Query: 107 ---DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
               ++F DEI  L+         + +   +D ++ +  +       L    ++ AT R 
Sbjct: 550 VSPSIIFFDEIDALAPAR----GSSNDSHVIDNVLNQILTEMDGLEELKDVVVMGATNRP 605

Query: 164 GLLTNPLQD--RFGIPIRLNFYEIEDLKTIV 192
            ++   L    RF   + +    +ED K I+
Sbjct: 606 DIVDPALLRAGRFDRLVYIGEPTMEDRKKII 636



 Score = 52.4 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 55/249 (22%), Positives = 89/249 (35%), Gaps = 33/249 (13%)

Query: 36  ACSNLKVFIEAA-----------KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRS 84
               L+   E             K   E    VL  GPPG GKT +A+ VA E G +F S
Sbjct: 190 LKDELQRLRETIELPLRHPELFQKLGIEPPKGVLLYGPPGTGKTLIAKAVASESGAHFIS 249

Query: 85  TSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
            +GP +           L  +     +    ++FIDE+  ++   EE+           L
Sbjct: 250 IAGPEVISKYYGESEQRLREVFEEARENSPSIIFIDELDSIAPRREEVTGEVERRVVAQL 309

Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQR 194
           +          +       +I AT RV  +   L+   RF   I +      D   I++ 
Sbjct: 310 LTMMDGLEERGQ-----VVVIGATNRVDAIDAALRRPGRFDREIEIGVPGEPDRIEILKI 364

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
             +   LA  D +   +A ++ G        L      A  A  + + R + D  L +  
Sbjct: 365 HTRGMPLA-EDVSLNVLAQQTHGFVGADLAAL------AREAAIRALRRYLPDLDLDKAE 417

Query: 255 IDKMGFDQL 263
           I++   D+L
Sbjct: 418 IEQETLDKL 426


>gi|126459037|ref|YP_001055315.1| ATPase [Pyrobaculum calidifontis JCM 11548]
 gi|126248758|gb|ABO07849.1| ATPase associated with various cellular activities, AAA_3
           [Pyrobaculum calidifontis JCM 11548]
          Length = 302

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 59/238 (24%), Positives = 92/238 (38%), Gaps = 31/238 (13%)

Query: 37  CSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDL 96
              L++ + A  A+     HVLF  PPGLGKTTLA+++A+ LG++F+           D+
Sbjct: 16  RDVLELLLAAVVAQG----HVLFTDPPGLGKTTLAKLLAKSLGLSFKRIQFTPDMLPSDV 71

Query: 97  AALL--TNLEDR----------DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSA 144
             +      E R          +VL  DEI+R     +  L  AME+ Q+  + G     
Sbjct: 72  VGVNVWRPHEGRFEFVKGPVFTNVLLADEINRAPPKTQAALLEAMEERQVT-VDGVTYKL 130

Query: 145 RSVKINLSRFTLIAATTR-VGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAV 203
               I L+  T      R V  L     DRF I + + +    +   I++R         
Sbjct: 131 EEPFIVLA--TQNPVEHRGVYPLPEAQLDRFLIQLSVGYPGEAEEAEILKR---RIAWKR 185

Query: 204 TDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD--AALLRLAIDKMG 259
            D  A    +  R        LL  +R   EV     + + +     AL    ++  G
Sbjct: 186 DDPTAYVTPVVGRE------ELLSWMRRAEEVYVDDAVLKYVVKIVQALRSHPLNAYG 237


>gi|107100963|ref|ZP_01364881.1| hypothetical protein PaerPA_01001993 [Pseudomonas aeruginosa PACS2]
          Length = 677

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 58/306 (18%), Positives = 90/306 (29%), Gaps = 37/306 (12%)

Query: 30  FTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
             GQ      LK  I A     + L H  LF G  G+GKTT+A+++A+ L      +S P
Sbjct: 1   MVGQTHV---LKALINA--LDNQRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVSSTP 55

Query: 89  VIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEIL-----YPAMEDFQLDLMVGEG 141
                G+ +      E R  D++ +D   R  +     L     Y          ++ E 
Sbjct: 56  ----CGECSVCREIDEGRFVDLIEVDAASRTKVEDTRELLDNVQYSPTRGRYKVYLIDEV 111

Query: 142 PSARSVKIN---------LSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
               S   N               + ATT    L   +  R  +   L     E +   +
Sbjct: 112 HMLSSHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSRC-LQFSLKNMPPERVVEHL 170

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL-L 251
                   +   D+A   +   + G+ R A  L     D A       +      A L  
Sbjct: 171 THVLGAENVPFEDDALWLLGRAADGSMRDAMSL----TDQAIAFGEGKVLAADVRAMLGT 226

Query: 252 RLAIDKMG-----FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
                  G      +      L  +      GP     ++  L+           P  I 
Sbjct: 227 LDHGQVYGVLQALLEGDARALLEAVRHLAEQGPDWGGVLAEILNVLHRVAIAQALPEAID 286

Query: 307 QGFIQR 312
            G   R
Sbjct: 287 NGQGDR 292


>gi|72388950|ref|XP_844770.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|62176057|gb|AAX70178.1| hypothetical protein, conserved [Trypanosoma brucei]
 gi|70801304|gb|AAZ11211.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
           927/4 GUTat10.1]
 gi|261328017|emb|CBH10994.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
           DAL972]
          Length = 335

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 57/276 (20%), Positives = 97/276 (35%), Gaps = 35/276 (12%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAK---ARAEAL----- 54
           D E  LS +V   +   +     T ++  G  +     K  IE  K    R E       
Sbjct: 61  DAEETLSEDVMDVEEINA-----TFDDVGGLEDVK---KALIEHVKWPFTRPELFEGNTL 112

Query: 55  -DH---VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLE 104
             H   +L  GPPG GKT +A+ +ARELG  F +     +          + AA+ T   
Sbjct: 113 RSHPKGILLYGPPGTGKTLIARALARELGCAFINVRTESLFSKWVGDTEKNAAAVFTLAA 172

Query: 105 DRD--VLFIDEIHRLSIIVEE-ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATT 161
                V+F+DEI  L  +       P      + +   +G     V    S+  +I AT 
Sbjct: 173 KLSPCVIFVDEIDALLGLRNSVDAAPHNNAKTIFMTHWDG-----VVQKKSKIVVIGATN 227

Query: 162 RVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRI 221
           R   +   ++ R  + + +   +I   + I+        +A     +  +   +  T   
Sbjct: 228 RPLAIDEAIRRRLPLQLEVPPPDITGRRKILN-ILMEHDVADESNRSRLVDYVASKTFGY 286

Query: 222 AGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257
            G  L  +   A +   + I  +     L     D+
Sbjct: 287 TGSDLTELCKAAALMPIREIGCDNELPCLECRHFDE 322


>gi|326437583|gb|EGD83153.1| ATPase AFG2 protein [Salpingoeca sp. ATCC 50818]
          Length = 852

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/170 (24%), Positives = 67/170 (39%), Gaps = 10/170 (5%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNL--EDRDV 108
           VL VGPPG GKT +A+ VARE G +    +GP I           L A+        R +
Sbjct: 330 VLLVGPPGTGKTLIARAVARECGADVTVINGPEIISRTYGETERSLKAIFAKAAPSGRHL 389

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +F+DEI  +    +       +     ++      A        R  ++AAT R   L  
Sbjct: 390 IFVDEIDAMCPARDAATSDLEKRIVTTMLTLMDGIAAKHSDGEGRVVVLAATNRPDALDP 449

Query: 169 PLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSR 216
            L+   RF   + +        + I++   +      TDE   ++A R+ 
Sbjct: 450 ALRRPGRFDREVDVGVPNAMQRRQILRVLLRRFNHTCTDEDIDDVADRAH 499



 Score = 53.5 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 71/199 (35%), Gaps = 29/199 (14%)

Query: 20  SLLR------PR-TLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPG 64
           S +R      PR T  +  G  +    LK  +E     ++A           +L  GPPG
Sbjct: 563 SAMREVVVDVPRVTWADIGGNDDIKQCLKEAVEWPLKYSDAFVRLGIRPPSGILMYGPPG 622

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLAALLTNLEDR------DVLFIDEIHR 116
             KT +A+ +A E  +NF +  GP +     G+    +  +  +       ++F DEI  
Sbjct: 623 CSKTLMAKALANESHINFIAVKGPELFSKWVGESERAVREVFRKARAAAPSIIFFDEIDA 682

Query: 117 LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RF 174
           L                 D ++ +          L   T++AAT R  ++   L    RF
Sbjct: 683 LGARR----GSGQGSSVADRVLTQLLVEMDGVDELRNVTVVAATNRPDMVDAALLRPGRF 738

Query: 175 GIPIRLNFYEIEDLKTIVQ 193
              + +          I++
Sbjct: 739 DRKVYVGPPTARARAEILR 757


>gi|317495276|ref|ZP_07953646.1| ATP-dependent protease [Gemella moribillum M424]
 gi|316914698|gb|EFV36174.1| ATP-dependent protease [Gemella moribillum M424]
          Length = 766

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 48/243 (19%), Positives = 96/243 (39%), Gaps = 47/243 (19%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  F+   K R +    +L   GPPG+GK++LA+ +AR +G +F   S
Sbjct: 315 EDHYGLDKIKERILEFLAVKKLRDDMKSPILCLSGPPGVGKSSLAKSIARSMGRSFVRIS 374

Query: 87  GPVIAKAGDLA------------ALLTNLE----DRDVLFIDEIHRL--------SIIVE 122
              +    ++              ++ +L+       V+ +DEI ++        +  + 
Sbjct: 375 LGGVRDEAEIRGHRRTYLGALPGKIIQSLKKIKTKNPVILLDEIDKMASDIKGDPASAML 434

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E++ PA  +  +D           +  +LS+   IA    + L+  PL+DR  +    ++
Sbjct: 435 EVIDPAQNNEFVD-------HYLDIPFDLSKVLFIATANNLSLIPAPLRDRMEVIELESY 487

Query: 183 YEIED---------LKTIVQRGAKLTGLAVTDEAACE------IAMRSRGTPRIAGRLLR 227
              E           + I + G K   ++ T +A  +           R   R+ G + R
Sbjct: 488 TVKEKENIAIKYLIPRQIKENGLKKEQISFTKQAINKVINGYTYEAGVRNLERVLGSICR 547

Query: 228 RVR 230
           +V 
Sbjct: 548 KVA 550


>gi|225436524|ref|XP_002276976.1| PREDICTED: similar to Cell division cycle protein 48 homolog [Vitis
           vinifera]
          Length = 802

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 55/270 (20%), Positives = 91/270 (33%), Gaps = 34/270 (12%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------------VLFVGPPGLGKTTLA 71
            L+E  G  +     K   +  +     L H              +L  GPPG GKT +A
Sbjct: 202 RLDE-VGYDDVGGFRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIA 260

Query: 72  QVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEE 123
           + VA E G  F   +GP I         G+L       E     ++FIDEI  ++   E+
Sbjct: 261 KAVANETGAFFFCINGPEIMSKLAGESEGNLRKAFEEAEKNAPSIVFIDEIDSIAPKREK 320

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLN 181
                        +V +  +      + +   +I AT R   +   L+   RF   I + 
Sbjct: 321 -----THGQVEKRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIG 375

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
             +      +++   K   L+  D     IA  S G        L       +    K  
Sbjct: 376 VPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDSHGYVGADLAAL-CTEAALQSIREKMD 433

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMI 271
             ++ D A+    ++ M     D  + T +
Sbjct: 434 VIDLEDEAIDAEVLNSMA--VTDKHFKTAL 461



 Score = 52.8 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 41/212 (19%), Positives = 71/212 (33%), Gaps = 18/212 (8%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +          ++  +          V
Sbjct: 519 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTKWFGESEANVREIFDKARQSASCV 578

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           LF DE+  ++      L  A      D ++ +               +I AT R  ++  
Sbjct: 579 LFFDELDSIATQRGSNLGDA---GGADRVLNQLLIEMDGMSAKKTVFIIGATNRPDIIDP 635

Query: 169 PLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
            L    R    I +   + +    I +   + + ++   +           +      + 
Sbjct: 636 ALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKHVDLRALAKYTQGFSGADITEIC 695

Query: 227 RRVRDFAEVAH-----AKTITREIADAALLRL 253
           +R   +A   +      K   RE    A+   
Sbjct: 696 QRACKYAIRENIEKDIEKKRGREENPKAMDED 727


>gi|195387666|ref|XP_002052515.1| GJ17580 [Drosophila virilis]
 gi|194148972|gb|EDW64670.1| GJ17580 [Drosophila virilis]
          Length = 994

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 61/180 (33%), Gaps = 13/180 (7%)

Query: 58  LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----------DLAALLTNLEDRD 107
           L  GPPGLGKTTLA  +AR  G N R  +                   ++++L   +  +
Sbjct: 420 LLCGPPGLGKTTLAHTIARHAGYNVREINASDDRSPEAFKLALENGTQMSSVLNQDKRPN 479

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
            + +DEI        E L   + D     +  +G  A      L R  +           
Sbjct: 480 CIVLDEIDGAPRQSIEYLVKFVSDGIFSKVKAKGAKAE--HNVLRRPIICICNDIYDPAL 537

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
            PL+      +     +   L   + + AK   L     +   +A +S    R     ++
Sbjct: 538 RPLRQ-IAFVVNFPPIDSARLAERLVQIAKKEHLKTDFGSLIALAEKSGNDVRSCISSMQ 596


>gi|311103225|ref|YP_003976078.1| chromosomal replication initiation protein [Achromobacter
           xylosoxidans A8]
 gi|310757914|gb|ADP13363.1| chromosomal replication initiation protein [Achromobacter
           xylosoxidans A8]
          Length = 487

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 78/228 (34%), Gaps = 35/228 (15%)

Query: 43  FIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL---GVNFRSTSGPVIAKAGDLAAL 99
            ++ A+    + + +   G  GLGKT L   +   +   G   R           D+   
Sbjct: 173 ALQVAENPGTSYNPLFLYGGVGLGKTHLIHAIGNAMVAAGTGVRVRYVHADQYVSDVVKA 232

Query: 100 LTN---------LEDRDVLFIDEIHRL---SIIVEEILYP--AMEDFQLDLMVGEGPSAR 145
                           D+L ID+I      +   EE  Y   AM   +  +++      +
Sbjct: 233 YQRKAFDDFKRYYHSLDLLLIDDIQFFSGKNRTQEEFFYAFEAMVAQRKQIIITSDTYPK 292

Query: 146 SVKINLSRFTLIAATTRVGLLTNPLQDRF--GIPIRLNFYEIEDLKTIVQRGAKLTGLAV 203
                            +  + + L  RF  G+ + +   E+E    I+ R A+  G+ +
Sbjct: 293 ----------------ELSGIDSRLISRFDSGLTVAIEPPELEMRVAILLRKAESEGVPM 336

Query: 204 TDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
            +E A  IA   R   R     LR+V  +A       +T ++   AL 
Sbjct: 337 PEEVAFFIAKHLRSNVRELEGALRKVLAYARFHGRDVLTVDVCKEALK 384


>gi|303252503|ref|ZP_07338666.1| DNA polymerase III subunits gamma and tau [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|302648471|gb|EFL78664.1| DNA polymerase III subunits gamma and tau [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
          Length = 679

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 75/242 (30%), Gaps = 55/242 (22%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVNF-- 82
           T  E  GQ    S L+  +   +     L H  LF G  G+GKT++A++ A+ L      
Sbjct: 5   TFSEVVGQQHVLSALENGLREGR-----LHHAYLFSGTRGVGKTSIARLFAKGLNCETGI 59

Query: 83  ----------------------RSTSGPVIAKAGDLAALLTNLEDRD------VLFIDEI 114
                                          K  D   LL N++ +       V  IDE+
Sbjct: 60  TATPCGECANCKAIEEGRFIDLIEIDAASRTKVEDTRELLDNVQYKPTVGRFKVYLIDEV 119

Query: 115 HRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRF 174
           H LS      L   +E+                         + ATT    L   +  R 
Sbjct: 120 HMLSRHSFNALLKTLEE------------------PPEYVKFLLATTDPQKLPITILSRC 161

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
            +   L   +   +   ++   +   +     A  ++A  ++G+ R +  L  +    + 
Sbjct: 162 -MQFHLRALDQAQIANHLEFILQQENIPYESVAIEKLAKAAQGSIRDSLSLTDQAIAVSN 220

Query: 235 VA 236
             
Sbjct: 221 AN 222


>gi|302853734|ref|XP_002958380.1| hypothetical protein VOLCADRAFT_121711 [Volvox carteri f.
           nagariensis]
 gi|300256260|gb|EFJ40530.1| hypothetical protein VOLCADRAFT_121711 [Volvox carteri f.
           nagariensis]
          Length = 1021

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/207 (21%), Positives = 73/207 (35%), Gaps = 13/207 (6%)

Query: 5   EGLLS---RNVSQEDADISLLRPR--TLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           E L S   R    +D     +R      E+  G       ++  +   K     +  ++F
Sbjct: 276 ERLTSSRAREFMTKDEKTGKMRDTGVRFEDIAGMDYLVVEMREVVRMLKGDPAYVKGIIF 335

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNL------EDRDVLFI 111
            GPPG GKT LA+ +A E GV F S+ G    +  AG  AA + NL      +   ++FI
Sbjct: 336 QGPPGTGKTYLARAIAGEAGVPFFSSVGSEFVEMFAGVAAARVNNLFYNARKKAPAIIFI 395

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DEI  +      +        +   ++        +     +   I AT     L   L 
Sbjct: 396 DEIDAIGRARSTLGGDPGSMERESALLAMLVQMDGITNKTEQVLTIGATNLAQELDAALL 455

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKL 198
                 +    +    L  ++   A L
Sbjct: 456 RPGRFEVVYEGWSAAALANLMNEAAIL 482


>gi|291320747|ref|YP_003516012.1| cell division protein FtsH [Mycoplasma agalactiae]
 gi|290753083|emb|CBH41059.1| Cell division protein ftsH homolog [Mycoplasma agalactiae]
          Length = 675

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 52/270 (19%), Positives = 96/270 (35%), Gaps = 20/270 (7%)

Query: 1   MMDREGLLSRNVSQEDADISLLRP-RTLEEFTGQVEACSNLKVFIEAAKA------RAEA 53
           MM R   +   +  E      ++  +T ++  G  EA   +K  ++  K           
Sbjct: 171 MMKRSMNMIGAIGDEKNPAQKIKSDKTFKDVAGNKEAVEEIKEIVDYLKNPKKYEIAGAR 230

Query: 54  LDH-VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR 106
           + H +L  GPPG GKT LA+  A E  V F   S        V   A  +  ++      
Sbjct: 231 MPHGILLGGPPGTGKTLLAKATAGEANVPFYFISASNFVEMFVGLGAKRVRTVVDEARKN 290

Query: 107 --DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164
              ++FIDE+  +       +    ++ +  L   +         + +     AAT R  
Sbjct: 291 APAIIFIDELDAIGRTRGSGIGGGHDEREQTL--NQLLVEMDGMKDNNGILFFAATNRTD 348

Query: 165 LLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
           +L   L    RF   I +   ++++ + I+   AK   ++     A         +    
Sbjct: 349 VLDPALTRPGRFDRTITVGLPDVKEREEILNLHAKGKRVSPNVNLAQVAKRTPGYSGAQL 408

Query: 223 GRLLRRVRDFAEVAHAKTITREIADAALLR 252
             ++      A    ++ I R+  D A+ R
Sbjct: 409 ENVINEAGLLAVRRDSEIIERDDIDEAIDR 438


>gi|305680500|ref|ZP_07403308.1| putative cell division protease FtsH [Corynebacterium matruchotii
           ATCC 14266]
 gi|305660031|gb|EFM49530.1| putative cell division protease FtsH [Corynebacterium matruchotii
           ATCC 14266]
          Length = 974

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 58/245 (23%), Positives = 91/245 (37%), Gaps = 21/245 (8%)

Query: 26  TLEEFTGQVEACSNL---KVFIEAAKARAEALD-----HVLFVGPPGLGKTTLAQVVARE 77
           T  +  G  EA   L   K F++   +R EAL       VL  GPPG GKT LA+ VA E
Sbjct: 165 TFADVAGADEAVDELQEIKDFLQ-DPSRYEALGAKIPRGVLLYGPPGTGKTLLARAVAGE 223

Query: 78  LGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
            GV F S SG       V   A  +  L     +    ++F+DEI  +       +    
Sbjct: 224 AGVPFYSISGSDFVEMFVGVGASRVRDLFKQARENSPCIIFVDEIDAVGRQRGSGMGGGH 283

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
           ++ +  L   +         +     L+AAT R  +L   L    RF   I +   +++ 
Sbjct: 284 DEREQTL--NQLLVEMDGFGDREGVILMAATNRPDILDQALLRPGRFDRQIPVTNPDLKG 341

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            + I++  A+    A   + A      +  +      +L              IT +  +
Sbjct: 342 REAILKVHAEGKPFAKDVDLAALARRTAGMSGADLANVLNEAALLTARIGGNVITADALE 401

Query: 248 AALLR 252
            A  R
Sbjct: 402 EATDR 406


>gi|213054513|gb|ACJ39432.1| cdc48 [Larimichthys crocea]
          Length = 806

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 50/266 (18%), Positives = 89/266 (33%), Gaps = 32/266 (12%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------------VLFVGPPGLGKTTLA 71
           +L E  G  +     K   +  +     L H              +L  GPPG GKT +A
Sbjct: 197 SLNE-VGYDDIGGVRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255

Query: 72  QVVARELGVNFRSTSGPVIAKA------GDLAALLTNLEDR--DVLFIDEIHRLSIIVEE 123
           + VA E G  F   +GP I          +L       E     ++FIDE+  ++   E+
Sbjct: 256 RAVANETGAFFFLINGPEIMGKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK 315

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLN 181
                        +V +  +        +   ++AAT R   +   L+   RF   + + 
Sbjct: 316 -----THGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIG 370

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
             +      I+Q   K   LA  D    ++A  + G        L       +    K  
Sbjct: 371 IPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADLAAL-CSEAALQAIRKKMD 428

Query: 242 TREIADAALLRLAIDKMGFDQLDLRY 267
             ++ D  +    ++ +     D ++
Sbjct: 429 LIDLEDETIDAEVMNSLAVTMDDFKW 454



 Score = 54.3 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 70/197 (35%), Gaps = 20/197 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVARE 77
           T E+  G  +    L+  ++      +            VLF GPPG GKT LA+ +A E
Sbjct: 475 TWEDIGGLDDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 534

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
              NF S  GP +          ++  +          VLF DE+  ++           
Sbjct: 535 CQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGN--VGD 592

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                D ++ +  +      +     +I AT R  ++   +    R    I +   + + 
Sbjct: 593 GGGAADRVINQILTEMDGMSSKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKS 652

Query: 188 LKTIVQRGAKLTGLAVT 204
             +I++   + + ++  
Sbjct: 653 RMSILKANLRKSPISKD 669


>gi|294658879|ref|XP_461219.2| DEHA2F20086p [Debaryomyces hansenii CBS767]
 gi|202953457|emb|CAG89607.2| DEHA2F20086p [Debaryomyces hansenii]
          Length = 366

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 52/261 (19%), Positives = 91/261 (34%), Gaps = 34/261 (13%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKV----------FIEAAKARAEA 53
            + LLS  ++ ED  +      T  +  G  +    L+              A  +  ++
Sbjct: 80  EKSLLSCLITPEDISV------TFGDIGGLKDIIDELREAVILPLTEPELFAAHSSLVQS 133

Query: 54  LDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--------AKAGDLAALLTNLED 105
              VLF GPPG GKT LA+ +A+E G  F S     I         K  D    L N   
Sbjct: 134 PKGVLFYGPPGCGKTMLAKAIAKESGAFFLSIRMSTIMDKWYGESNKIVDAIFSLANKLQ 193

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSAR-SVKINLSRFTLIAATTRVG 164
             ++FIDEI             +  D ++  ++           ++  R  ++ AT R  
Sbjct: 194 PCIVFIDEIDSFLRDR------SSNDHEVSSIIKAEFMTLWDGLMSNGRIMVMGATNRRE 247

Query: 165 LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGR 224
            +      R      +   +    ++I+ +  K + L   D     I   +R     +G 
Sbjct: 248 DIDQAFMRRLPKQFPIGRPDASQRRSILNKILKDSKLDEDDFDLEAIVSNTRS---FSGS 304

Query: 225 LLRRVRDFAEVAHAKTITREI 245
            L+ +   A +   +   R+ 
Sbjct: 305 DLKELCREAALNSMREFIRDN 325


>gi|225440045|ref|XP_002282146.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297741633|emb|CBI32765.3| unnamed protein product [Vitis vinifera]
          Length = 806

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 57/273 (20%), Positives = 89/273 (32%), Gaps = 49/273 (17%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------------VLFVGPPGLGKTTLA 71
            L+E  G  +     K   +  +     L H              +L  GPPG GKT +A
Sbjct: 201 RLDE-VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIA 259

Query: 72  QVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEE 123
           + VA E G  F   +GP I          +L       E     ++FIDEI  ++   E+
Sbjct: 260 RAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREK 319

Query: 124 ILYPA---MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
                   +    L LM G    A  + I         AT R   +   L+ RFG   R 
Sbjct: 320 THGEVERRIVSQLLTLMDGLKSRAHVIVI--------GATNRPNSIDPALR-RFGRFDRE 370

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV-RDFAEVAHAK 239
               + D    ++    +  +   +    E         RIA      V  D A +    
Sbjct: 371 IDIGVPDEVGRLE----VLRIHTKNMKLSEDV----DLERIAKDTHGYVGADLAAL---- 418

Query: 240 TITREIADAALLRLAIDKMGFDQLDLRYLTMIA 272
             T         ++ +  +  + +D   L  +A
Sbjct: 419 -CTEAALQCIREKMDVIDLEDESIDAEILNSMA 450



 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 75/226 (33%), Gaps = 20/226 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVARE 77
           + E+  G       L+  ++      E            VLF GPPG GKT LA+ +A E
Sbjct: 479 SWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANE 538

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
              NF S  GP +          ++  +          VLF DE+  ++      +  A 
Sbjct: 539 CQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDA- 597

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                D ++ +  +            +I AT R  ++   L    R    I +   + + 
Sbjct: 598 -GGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDS 656

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
              I +   + + ++   +           +      + +R   +A
Sbjct: 657 RHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYA 702


>gi|126460718|ref|YP_001056996.1| AAA family ATPase, CDC48 subfamily protein [Pyrobaculum
           calidifontis JCM 11548]
 gi|126250439|gb|ABO09530.1| AAA family ATPase, CDC48 subfamily [Pyrobaculum calidifontis JCM
           11548]
          Length = 731

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 63/275 (22%), Positives = 103/275 (37%), Gaps = 29/275 (10%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIE--------AAKARAE 52
           M     ++   + +   ++  +R    ++  G       L+  +E          K    
Sbjct: 430 MGALREIIPSALREVHIEVPRVR---WDDIGGLENVKQELREAVEWPLKYPDRFKKFGLR 486

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLAALLTNLEDR---- 106
           A   +L  GPPG GKT LA+ VA E G NF +  GP I     G+   ++  +  +    
Sbjct: 487 APKGILLFGPPGTGKTLLAKAVATESGANFVAVRGPEIFSKWVGESEKMVREIFRKARMA 546

Query: 107 --DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164
              V+FIDEI  L+          + +  +  ++ E          L    +IAAT R  
Sbjct: 547 APAVIFIDEIDALATARGLGGDSLVSERVVAQLLAE----MDGIKALENVVVIAATNRPD 602

Query: 165 LLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
           L+   L    RF   I +   + +    I+    + T LA  D    EIA R+ G     
Sbjct: 603 LVDPALLRPGRFDRIIYVPPPDFKARLEILLIHTRATPLA-KDVDLEEIARRTEGYSGAD 661

Query: 223 GRLLRRVRDFAEVAHA---KTITREIADAALLRLA 254
             LL R   F  +      K ++    + AL ++ 
Sbjct: 662 LELLVREATFLALRENIDTKEVSMRHFEEALKKVR 696



 Score = 53.2 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 77/226 (34%), Gaps = 23/226 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
           T E+     +A   ++  +E      E   H        +L +GPPG GKT LA+ VA E
Sbjct: 177 TWEDIGDLEDAKQKIRELVELPLRHPELFKHLGIEPPKGILLIGPPGTGKTLLAKAVANE 236

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM 129
               F + +GP I           L  +    +     ++FIDEI  ++   EE+     
Sbjct: 237 ANAYFVAINGPEIMSKYYGESEARLREIFEEAKKNAPAIIFIDEIDAIAPKREEVTGEVE 296

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
           +     L+               +  +I AT R   +   L+   RF   I +N  + + 
Sbjct: 297 KRVVAQLLT-----LMDGLQERGQVIVIGATNRPDAVDPALRRPGRFDREIWINPPDFKG 351

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
              I+    +   L    +      +    T      L R     A
Sbjct: 352 RYEILVIHTRNMPLGPDVDLRKLAEITHGFTGADLAALAREAAMSA 397


>gi|56750248|ref|YP_170949.1| ATP-dependent Zn protease [Synechococcus elongatus PCC 6301]
 gi|56685207|dbj|BAD78429.1| ATP-dependent Zn protease [Synechococcus elongatus PCC 6301]
          Length = 627

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 55/274 (20%), Positives = 91/274 (33%), Gaps = 20/274 (7%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKARAEAL-------DHVLFVGPPGLGKTTLAQVVARE 77
            T  +  G  EA + L+  ++  K     L         VL VGPPG GKT LA+ VA E
Sbjct: 170 TTFSDVAGVEEAKAELQEIVDFLKTPERYLNIGARIPKGVLLVGPPGTGKTLLAKAVAGE 229

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
             V F S SG         A A  +  L    + +   ++FIDE+  +        +   
Sbjct: 230 ARVPFFSISGSEFVELFVGAGAARVRDLFEQAKQKAPCIVFIDELDAIGKSRASGNFMGG 289

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            D +   +            + +   ++AAT R   L   L    RF   + ++  ++  
Sbjct: 290 NDEREQTLNQLLTEMDGFSADGATVIVLAATNRPETLDPALLRPGRFDRQVLVDRPDLAG 349

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            K I+    +   L    +        S         L+      A       + +   +
Sbjct: 350 RKAILDIYGRKVKLDPEVDLQAIAVRTSGFAGADLANLINEAALLAARNGRTEVAQADLN 409

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVG 281
            A+ R+     G ++          R      VG
Sbjct: 410 EAIERVVA---GLEKKSRVLNDNEKRIVAYHEVG 440


>gi|118580667|ref|YP_901917.1| ATP-dependent metalloprotease FtsH [Pelobacter propionicus DSM
           2379]
 gi|118503377|gb|ABK99859.1| membrane protease FtsH catalytic subunit [Pelobacter propionicus
           DSM 2379]
          Length = 621

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 63/245 (25%), Positives = 100/245 (40%), Gaps = 27/245 (11%)

Query: 26  TLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T E+  G  EA   L   I       +  K   +    VL +GPPG GKT LA+ +A E 
Sbjct: 154 TFEDVAGIEEAKEELNEIIFFLKDPKKFTKLGGKIPKGVLLMGPPGTGKTLLAKAIAGEA 213

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG       V   A  +  L    +     ++FIDEI  +       L    +
Sbjct: 214 GVPFFSISGSDFVEMFVGVGASRVRDLFLQGKKSAPCIIFIDEIDAVGRHRGAGLGGGHD 273

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E     S +       LIAAT R  +L   L    RF   + +   +++
Sbjct: 274 EREQTLNQLLVEMDGFESNEG----VILIAATNRPDVLDPALLRPGRFDRQVVVPRPDVK 329

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++  AK   LA       ++ + +RGTP  +G  L  V + A +  A+    ++ 
Sbjct: 330 GREMILKVHAKKVPLASD----VDLEVIARGTPGFSGADLANVVNEAALLAARADKNQVE 385

Query: 247 DAALL 251
            +   
Sbjct: 386 SSDFD 390


>gi|159108838|ref|XP_001704687.1| AAA family ATPase [Giardia lamblia ATCC 50803]
 gi|157432757|gb|EDO77013.1| AAA family ATPase [Giardia lamblia ATCC 50803]
          Length = 870

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 48/255 (18%), Positives = 90/255 (35%), Gaps = 24/255 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDHV--------LFVGPPGLGKTTLAQVVARE 77
           T ++  G       L   I+      E    +        L  GPPG GK+ LA+ +A E
Sbjct: 504 TWDDIGGLEHTKRELIELIQYPIRYKEKYQQMGIEPSRGALLWGPPGTGKSLLAKAIANE 563

Query: 78  LGVNFRSTSGPVI--AKAGDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAM 129
            G N+ S  GP +     G+    + N+ D+       VLF DEI  ++   +     A 
Sbjct: 564 CGCNYISIKGPELLSKWVGESEQNIRNIFDKARQAAPCVLFFDEIESIT---QHRGTSAS 620

Query: 130 EDFQL-DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
              ++ D M+ +  +            +I AT R   + + L    R    I +   +  
Sbjct: 621 GGGEVTDRMLNQILTELDGVGVRKDVFIIGATNRPDTIDSALMRPGRLDTLIYIPLPDYP 680

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGT--PRIAGRLLRRVRDFAEVAHAKTITRE 244
               +++   + + +   + +  +IA  + G     +A    R  +              
Sbjct: 681 SRVAVLKAHLRKSKVNEKEVSLEQIAQVTDGYSGADLAEICSRACKYSIRENVEGFSRAM 740

Query: 245 IADAALLRLAIDKMG 259
            A  ++ +  +D  G
Sbjct: 741 SAFESMKKSWLDSHG 755



 Score = 53.5 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 57/245 (23%), Positives = 91/245 (37%), Gaps = 45/245 (18%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------------AKAGDL--A 97
           +    +L  GPPG GKTT+ + +A E G  F   +G  I             KA D+   
Sbjct: 251 KPPRGILLTGPPGCGKTTIGKAIANEAGAYFFLLNGAEIMSSMAGESEKNLRKAFDICEQ 310

Query: 98  ALLTNLEDRD-----VLFIDEIHRLSIIVEEILYPA---MEDFQLDLMVGEGPSARSVKI 149
               + ++ D     +LFIDEI  ++    E        +    L LM G  P       
Sbjct: 311 EAEKSAKENDGVGCAILFIDEIDCIAGNRAESKGEVEKRVVSQLLTLMDGIKPR------ 364

Query: 150 NLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEA 207
             S   ++AAT R  ++   L+   RF   I++N  +      I+    +   L      
Sbjct: 365 --SNVIVLAATNRPNVIDPALRRFGRFDREIQINVPDENGRLEILSIHTRKLKLHPD--- 419

Query: 208 ACEIAMRSRGTPRIAGRLLRRV-RDFAEV--AHAKTITREIADAALLRLAIDKMGFDQLD 264
                       RIA      V  D A++    A    RE  +  L   + +K+  +QL+
Sbjct: 420 -------GVDIVRIANETNGYVGADLAQICTEAAMMCVRESMEMVLDMESEEKLTDEQLN 472

Query: 265 LRYLT 269
             ++T
Sbjct: 473 KIFIT 477


>gi|332799732|ref|YP_004461231.1| hypothetical protein TepRe1_1793 [Tepidanaerobacter sp. Re1]
 gi|332697467|gb|AEE91924.1| protein of unknown function DUF815 [Tepidanaerobacter sp. Re1]
          Length = 461

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 75/204 (36%), Gaps = 19/204 (9%)

Query: 24  PRTLEEFTG---QV-EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           P  LE   G   Q  E   N + F++   A      ++L  G  G GK++  + +  E G
Sbjct: 223 PILLENLIGYEEQKNEVLRNTRQFVQGFGAN-----NMLLYGDRGTGKSSTIKALIHEFG 277

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDRD---VLFIDEIHRLSIIVEEILYPAMEDFQLD- 135
            +          +  DL+ ++  L DR    ++F+D++       E     A+ +  L+ 
Sbjct: 278 EDGLRMVEVTKDRLIDLSNIVAELRDRPYRFIIFVDDLSFEEHETEYKYLKAILEGSLEP 337

Query: 136 ------LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
                 +           + +  R    A           L DRFGI +     + E   
Sbjct: 338 APENVLIYATSNRRHLIREFHSDRAEDEAKAQDTLQEKLSLSDRFGITVVYLSPDQEKYL 397

Query: 190 TIVQRGAKLTGLAVTDEAACEIAM 213
            IV+  A+  G+ +  +   E+A+
Sbjct: 398 DIVEGIAESKGINIEPKQLREMAL 421


>gi|313206718|ref|YP_004045895.1| ATP-dependent metalloprotease ftsh [Riemerella anatipestifer DSM
           15868]
 gi|312446034|gb|ADQ82389.1| ATP-dependent metalloprotease FtsH [Riemerella anatipestifer DSM
           15868]
 gi|315023788|gb|EFT36790.1| Cell division protein ftsH [Riemerella anatipestifer RA-YM]
 gi|325335842|gb|ADZ12116.1| ATP-dependent Zn protease [Riemerella anatipestifer RA-GD]
          Length = 658

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 62/267 (23%), Positives = 96/267 (35%), Gaps = 37/267 (13%)

Query: 26  TLEEFTGQVEACSN-------LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G   A          LK   +  K   +    VL VGPPG GKT LA+ VA E 
Sbjct: 184 TFKDVAGLEGAKEEVQEVVDFLKNAEKYTKLGGKIPKGVLLVGPPGTGKTLLAKAVAGEA 243

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  L    + +   ++FIDEI  +        +    
Sbjct: 244 KVPFFSLSGSDFVEMFVGVGASRVRDLFAQAKAKSPAIIFIDEIDAIGRARGRGAFTGGN 303

Query: 131 DFQ-------LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLN 181
           D +       L  M G G     +        ++AAT R  +L   L    RF   I ++
Sbjct: 304 DERENTLNQLLTEMDGFGTDTNVI--------VMAATNRADILDKALMRAGRFDRSIYVD 355

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
             E+ + K I         L  T     E+   ++ TP  +G  +  V + A +  A+  
Sbjct: 356 LPELHERKQIFNVHLAKIKLDNT----VEVEFLAKQTPGFSGADIANVCNEAALVAARKG 411

Query: 242 TREIADAA-LLRLAIDKMGFDQLDLRY 267
              +     L  +     G ++ +   
Sbjct: 412 HEAVGKQDFLDAVDRIIGGLEKKNKAI 438


>gi|291457503|ref|ZP_06596893.1| proteasome-activating nucleotidase [Bifidobacterium breve DSM
           20213]
 gi|291381338|gb|EFE88856.1| proteasome-activating nucleotidase [Bifidobacterium breve DSM
           20213]
          Length = 401

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 62/280 (22%), Positives = 99/280 (35%), Gaps = 48/280 (17%)

Query: 8   LSRNVSQEDADISLLR------PR-TLEEFTGQVEACSNLKVFIE-----AAKARA---E 52
           +    S  D DI   R      P  T + F G  +  +  K  IE     +A+ RA   +
Sbjct: 126 IRPGESDHDDDIKQYRITPGSDPSLTFDSFGGYEQVITRAKELIETQLGNSAQMRAIGAK 185

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLT------NLE 104
            +  V+F G PG GKT LA+++A      F   SGP I     GD    L         +
Sbjct: 186 PIKGVIFTGAPGTGKTHLARIIANVADAQFYLVSGPTIVSKYVGDSEETLRMIFAAAQAD 245

Query: 105 DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164
            R ++F DEI  ++   E        +     +V +  +      +     ++AAT R+ 
Sbjct: 246 KRAIIFFDEIDSIASSREND-----TNGVGKRLVAQLLTLMDGFESKGNVVVVAATNRIE 300

Query: 165 LLTNPL-----------------QDRFGIP-IRLNFYEIEDLKTIVQRGAKLTGLAVTDE 206
            +   L                 +DR GI  ++ +   IE    +     +  G +  + 
Sbjct: 301 DVDPALLRPGRFDWQIPFPMPSERDRLGILQVQAHSLSIEGELPLEDIARRTEGWSGAEV 360

Query: 207 AA--CEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            A   E A+ +    R A R    V  F  V     +   
Sbjct: 361 CAIWTEAALVAAKDRRGAIRAADLVTAFERVERRPELRHH 400


>gi|255654725|ref|ZP_05400134.1| putative ATP-dependent peptidase [Clostridium difficile QCD-23m63]
          Length = 465

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 59/264 (22%), Positives = 90/264 (34%), Gaps = 27/264 (10%)

Query: 8   LSRNVSQEDADISLLRPRT-LEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLF 59
           + R+   +D+  +   P+T   +  G  E    L   ++  K+        A+    VLF
Sbjct: 21  MERDNQTDDSLSTK--PKTTFRDVAGLDEVKEELFEIVDFMKSPQKYQKMGAKIPKGVLF 78

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFI 111
            GPPG GKT LA  VA E   +F + +G           A  +  L          ++FI
Sbjct: 79  YGPPGTGKTLLASAVAGETNSSFFNVTGSEFVEKYVGVGAKRVRTLFEKARKEAPSIIFI 138

Query: 112 DEIHRLSIIVEEILYPAME-DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           DEI  +       L    E D  L+ ++ E           S   +I AT R+ LL   L
Sbjct: 139 DEIDAVGAKR--HLESNNEKDQTLNQLLVEMDGFNKD----SNVLIIGATNRLDLLDEAL 192

Query: 171 QD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
               RF   I +          I++       +  +                    +   
Sbjct: 193 LRPGRFDRHIHIGAPNYHTRFEILKVHTDDKPIDKSVNLELLAKKTHGFNGAHLSNIANE 252

Query: 229 VRDFAEVAHAKTITREIADAALLR 252
              FA    ++ IT E  D AL R
Sbjct: 253 AAIFAVRDDSECITSEHFDKALER 276


>gi|217033199|ref|ZP_03438649.1| hypothetical protein HPB128_162g4 [Helicobacter pylori B128]
 gi|298736418|ref|YP_003728944.1| DNA polymerase III subunit gamma/tau [Helicobacter pylori B8]
 gi|216945073|gb|EEC23784.1| hypothetical protein HPB128_162g4 [Helicobacter pylori B128]
 gi|298355608|emb|CBI66480.1| DNA polymerase III subunit gamma/tau [Helicobacter pylori B8]
          Length = 558

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 77/256 (30%), Gaps = 59/256 (23%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA------- 75
           RP+   E  GQ      L + ++  +         LF G  G GKT+ +++ A       
Sbjct: 9   RPKHFSELVGQESVAKTLSLALDNQRLANAY----LFSGLRGSGKTSSSRIFARALMCEE 64

Query: 76  -----------------RELGVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFID 112
                                ++     G       D+  L+             +  ID
Sbjct: 65  GPKAVPCDTCIQCQSALNNHHIDIIEMDGASNRGIDDVRNLIEQTRYKPSFGRYKIFIID 124

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H  +      L   +E+                    S    + ATT    L   +  
Sbjct: 125 EVHMFTTEAFNALLKTLEE------------------PPSHVKFLLATTDALKLPATILS 166

Query: 173 R---FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           R   F          I  LKTI++       ++    A  ++A   +G+ R    LL + 
Sbjct: 167 RTQHFRFKKIPENSVISHLKTILE----KEQVSYESSALEKLAHSGQGSLRDTITLLEQA 222

Query: 230 RDFAEVAHAKTITREI 245
            ++ + A  +    E+
Sbjct: 223 INYCDNAITEGKVAEM 238


>gi|197294483|ref|YP_001799024.1| Putative IMP dehydrogenase/GMP reductase [Candidatus Phytoplasma
           australiense]
 gi|171853810|emb|CAM11751.1| Putative IMP dehydrogenase/GMP reductase [Candidatus Phytoplasma
           australiense]
          Length = 713

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 91/249 (36%), Gaps = 22/249 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDHV--------LFVGPPGLGKTTLAQVVARE 77
           T ++  G       L+  I   K     L +         L   PPG GKT L + ++ E
Sbjct: 278 TFKDVYGMESEKEELEDLIFYFKESNNNLVNFDKIRPKGYLLYEPPGTGKTFLLKALSNE 337

Query: 78  LGVNF------RSTSGPVIAKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAM 129
               F      +     V     +   +    E  D+ ++FIDEI  ++   ++      
Sbjct: 338 CNAYFIEFEPSKLDKTYVGEGVEEWEKIWMEAERHDKTIIFIDEISGMANREDKNSNKTS 397

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
            +   +++       RS K    +  L+ AT  +  +   L+ RF   I+++  + E ++
Sbjct: 398 INIVNNILTKLDGFNRSDK----KIVLMGATNHLDQIDKVLRSRFSKEIKIDLIKDEKIE 453

Query: 190 TIVQRGAKLTGLAVTDE-AACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             ++   +   ++        EIA R +G    + R L  + + A     K  T      
Sbjct: 454 GFLKFLIEPYQISYHTYLHLKEIANRCKGK-NYSNRDLTTIINDAYNKTNKFKTLNPKHE 512

Query: 249 ALLRLAIDK 257
            +L   +D+
Sbjct: 513 VMLPSDLDE 521


>gi|163786153|ref|ZP_02180601.1| putative transmembrane AAA-metalloprotease FtsH [Flavobacteriales
           bacterium ALC-1]
 gi|159878013|gb|EDP72069.1| putative transmembrane AAA-metalloprotease FtsH [Flavobacteriales
           bacterium ALC-1]
          Length = 647

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 55/264 (20%), Positives = 100/264 (37%), Gaps = 29/264 (10%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAK-------ARAEALDHVLFVGPPGLGKTTLAQVVARE 77
            + ++  G   A   ++  ++  K          +     L VGPPG GKT LA+ VA E
Sbjct: 193 TSFKDVAGLEGAKEEVQEIVDFLKFPEKYTALGGKIPKGALLVGPPGTGKTLLAKAVAGE 252

Query: 78  LGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM 129
             V F S SG       V   A  +  L    +++   ++FIDEI  +     +      
Sbjct: 253 AKVPFFSLSGSDFVEMFVGVGASRVRDLFKQAKEKSPSIIFIDEIDAIGRARGKNAMSGS 312

Query: 130 ED---FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
            D     L+ ++ E     +     S   ++AAT R  +L   L    RF   I ++  +
Sbjct: 313 NDERENTLNQLLTEMDGFGTN----SNVIVLAATNRADILDKALMRAGRFDRQIYVDLPD 368

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           + + K I +   +      T     +I   ++ TP  +G  +  V + A +  A+   + 
Sbjct: 369 VRERKEIFEVHLRPLKKEET----LDIDFLAKQTPGFSGADIANVCNEAALIAARKGKKA 424

Query: 245 IADAA-LLRLAIDKMGFDQLDLRY 267
           +     L  +     G ++ +   
Sbjct: 425 VNKQDFLDAVDRIVGGLEKKNKII 448


>gi|170589810|ref|XP_001899666.1| Putative activator 1 36 kDa subunit [Brugia malayi]
 gi|158592792|gb|EDP31388.1| Putative activator 1 36 kDa subunit, putative [Brugia malayi]
          Length = 347

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 52/162 (32%), Gaps = 26/162 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP +L E     E    L   I         L H+LF GPPG GKT+     AR
Sbjct: 16  PWVEKYRPASLTELVSHQEITDTLMKLI-----NENRLPHLLFYGPPGTGKTSTILAAAR 70

Query: 77  ------ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-------------DVLFIDEIHRL 117
                 +L       +       G +   + N                  ++ +DE   +
Sbjct: 71  MLYTSKQLSSMVLELNASDDRGIGIVREQIINFAQTSTLNVDKNQSSVPKLIILDEADAM 130

Query: 118 SIIVEEILYPAMEDFQ--LDLMVGEGPSARSVKINLSRFTLI 157
           +   +  L   +E F   +   +     ++ +    SR T +
Sbjct: 131 TKDAQSALRRVIEKFTDNVRFCIICNYLSKIIPAIQSRCTRL 172


>gi|145351544|ref|XP_001420133.1| AAA-metalloprotease FtsH, chloroplast precursor [Ostreococcus
           lucimarinus CCE9901]
 gi|144580366|gb|ABO98426.1| AAA-metalloprotease FtsH, chloroplast precursor [Ostreococcus
           lucimarinus CCE9901]
          Length = 677

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 59/252 (23%), Positives = 95/252 (37%), Gaps = 29/252 (11%)

Query: 25  RTLEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
            T  +  G  EA   L+  ++        A+  A     V+ VG PG GKT LA+ VA E
Sbjct: 186 TTFADVAGVDEAKEELQEIVDILKNPAKYARLGARPPSGVMLVGAPGTGKTLLARAVAGE 245

Query: 78  LGVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
            GV F S S             A+  ++ A     +   ++FIDEI  ++    +     
Sbjct: 246 AGVPFISISASEFVELYVGMGAARVREVFA-RAKAQSPSIVFIDEIDAVAKSRGDGKMRG 304

Query: 129 M----EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNF 182
           M     +  L+ ++ E     +  + +     IAAT R   L   L+   RF   I ++ 
Sbjct: 305 MGNDEREQTLNQLLTELDGFETESMVIC----IAATNRADTLDAALRRPGRFDRTISVDR 360

Query: 183 YEIEDLKTI--VQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            + +  + I  V  G +   LA          M +  T      L+      A      T
Sbjct: 361 PDKQGRREILAVHTGRRALPLAEDAGLDIIAQMTAGFTGADLENLVNEAALLAGREGKST 420

Query: 241 ITREIADAALLR 252
           ++    +AA+LR
Sbjct: 421 VSYTDFEAAVLR 432


>gi|330507531|ref|YP_004383959.1| replication factor C large subunit [Methanosaeta concilii GP-6]
 gi|328928339|gb|AEB68141.1| replication factor C large subunit [Methanosaeta concilii GP-6]
          Length = 534

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 71/221 (32%), Gaps = 22/221 (9%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
                RP TL++  G  +A  +L+ +  + +        V+  GP G GKT+ A  +A +
Sbjct: 7   WTEKYRPATLKQVLGNGKAIDDLREWALSWERSEPITGAVILYGPAGTGKTSAALALAHD 66

Query: 78  LGVNFRSTSGPVIAKAGDLAALL-------TNLEDRDVLFIDEIHRLS----IIVEEILY 126
              ++   +      AG +  +        T      ++ +DE   L           + 
Sbjct: 67  FDWDYIEMNASDARTAGMIEKIAVPASRSQTFSGKPRLVILDEADNLHGTADRGGAAAML 126

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLS-----RFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
             + +    +++         K         +F  + +TT    L    Q   GI     
Sbjct: 127 RLVRNTLQPVILIANEYYEIDKSLRDATRGIQFRSVRSTTIAQALRAICQAE-GIDC--- 182

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
               + L TI +R        + D  A      +     +A
Sbjct: 183 --NPDLLVTIAERAGGDMRSGINDLQAAAEGQETLREEDLA 221


>gi|307637401|gb|ADN79851.1| DNA polymerase III subunits gamma and tau [Helicobacter pylori 908]
 gi|325995993|gb|ADZ51398.1| DNA polymerase III subunits gamma and tau [Helicobacter pylori
           2018]
          Length = 591

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 79/256 (30%), Gaps = 59/256 (23%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA------- 75
           RP+   E  GQ      L + ++  +         LF G  G GKT+ +++ A       
Sbjct: 9   RPKHFSELVGQESVAKTLSLALDNQRLANAY----LFSGLRGSGKTSSSRIFARALMCET 64

Query: 76  -----------------RELGVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFID 112
                                ++     G       D+  L+             +  ID
Sbjct: 65  GPKAVPCDTCIQCQSALNNHHIDIIEMDGASNRGIDDVRNLIEQTRYKPSFGRYKIFIID 124

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H  +      L   +E+                    S    + ATT    L   +  
Sbjct: 125 EVHMFTTEAFNALLKTLEE------------------PPSHVKFLLATTDALKLPATILS 166

Query: 173 R---FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           R   F          I  LKTI++       ++  + A  ++A   +G+ R    LL + 
Sbjct: 167 RTQHFRFKKIPENSVISHLKTILE----KEQVSYENSALEKLAHSGQGSLRDTITLLEQA 222

Query: 230 RDFAEVAHAKTITREI 245
            ++ + A  ++   E+
Sbjct: 223 INYCDNAITESKVAEM 238


>gi|293602695|ref|ZP_06685136.1| DNA-directed DNA replication initiator protein [Achromobacter
           piechaudii ATCC 43553]
 gi|292818886|gb|EFF77926.1| DNA-directed DNA replication initiator protein [Achromobacter
           piechaudii ATCC 43553]
          Length = 485

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 78/228 (34%), Gaps = 35/228 (15%)

Query: 43  FIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL---GVNFRSTSGPVIAKAGDLAAL 99
            ++ A+    + + +   G  GLGKT L   +   +   G   R           D+   
Sbjct: 171 ALQVAENPGTSYNPLFLYGGVGLGKTHLIHAIGNAMVAAGTGVRVRYVHADQYVSDVVKA 230

Query: 100 LTN---------LEDRDVLFIDEIHRL---SIIVEEILYP--AMEDFQLDLMVGEGPSAR 145
                           D+L ID+I      +   EE  Y   AM   +  +++      +
Sbjct: 231 YQRKAFDDFKRYYHSLDLLLIDDIQFFSGKNRTQEEFFYAFEAMVAQRKQIIITSDTYPK 290

Query: 146 SVKINLSRFTLIAATTRVGLLTNPLQDRF--GIPIRLNFYEIEDLKTIVQRGAKLTGLAV 203
                            +  + + L  RF  G+ + +   E+E    I+ R A+  G+ +
Sbjct: 291 ----------------ELSGIDSRLISRFDSGLTVAIEPPELEMRVAILLRKAESEGVPM 334

Query: 204 TDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
            +E A  IA   R   R     LR+V  +A       +T ++   AL 
Sbjct: 335 PEEVAFFIAKHLRSNVRELEGALRKVLAYARFHGRDVLTVDVCKEALK 382


>gi|291459314|ref|ZP_06598704.1| cell division protein FtsH [Oribacterium sp. oral taxon 078 str.
           F0262]
 gi|291418568|gb|EFE92287.1| cell division protein FtsH [Oribacterium sp. oral taxon 078 str.
           F0262]
          Length = 692

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 49/197 (24%), Positives = 77/197 (39%), Gaps = 23/197 (11%)

Query: 26  TLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G+ EA   L   +       + +K  A      L VGPPG GKT LA+ VA E 
Sbjct: 231 TFKDVAGEDEAKELLTEMVDYLNHPDKYSKIGARIPKGALLVGPPGTGKTLLAKAVAGEA 290

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG           A  +  L    + +   ++FIDEI  +            +
Sbjct: 291 GVPFFSISGSEFVEMFVGMGAAKVRDLFEQAKKKSPCIIFIDEIDAIGKKRGAGGLGGND 350

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E     S K       ++AAT +   L   L    RF   + +   + +
Sbjct: 351 EREQTLNQLLTEMDGFDSSKA----IIILAATNQPDQLDPALLRPGRFDRRVPVELPDFK 406

Query: 187 DLKTIVQRGAKLTGLAV 203
               I++  AK   +A 
Sbjct: 407 GRVDILKVHAKKIKMAD 423


>gi|225684762|gb|EEH23046.1| proteasome-activating nucleotidase [Paracoccidioides brasiliensis
           Pb03]
          Length = 924

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 69/335 (20%), Positives = 121/335 (36%), Gaps = 47/335 (14%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEA----------LDHVLFVGPPGLG 66
            D   +R  T E+     +    LK     +  R +A          +  +L  GPPG G
Sbjct: 606 VDAESIR-TTFEDVHAPADTIEALKTLTSLSLIRPDAFTYGVLSTDRIPGLLLYGPPGTG 664

Query: 67  KTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLS 118
           KT LA+ VAR+ G      SG  +          ++ A+ T  +     V+FIDE   + 
Sbjct: 665 KTMLAKAVARQSGATVLEVSGSEVYDMYVGEGEKNVKAIFTLAKKLSPCVVFIDEADAIF 724

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178
                    A        ++ +          LS F ++ AT R   L + +  R    +
Sbjct: 725 CSR----VAASNRTTHRELINQFLREWDGMNELSAFIMV-ATNRPFDLDDAVLRRLPRRL 779

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
            ++    +D  +I++   +   +     A+ ++A  +  TP  +G  L+ +   A +A  
Sbjct: 780 LVDLPTEQDRLSILKIHLREEQVD----ASLDLAELASRTPLYSGSDLKNMCIAAALA-- 833

Query: 239 KTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIED 298
                E  + A      +   F   + R L             +E ISA +SE    +  
Sbjct: 834 --CVNEENEQAAHHTGDEP--FKYPERRILR-----KAHFERAMEEISASISEDMSTL-S 883

Query: 299 LIEPYMIQQGFIQRTPRGRLLMPIAWQHLGIDIPH 333
            I+ +   + +  R  +GR    + W   G   PH
Sbjct: 884 AIKKF--DEKYGDR--KGRRKKSVGW---GFKAPH 911


>gi|241949865|ref|XP_002417655.1| CDC48 ATPase, putative [Candida dubliniensis CD36]
 gi|223640993|emb|CAX45351.1| CDC48 ATPase, putative [Candida dubliniensis CD36]
          Length = 826

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 71/195 (36%), Gaps = 23/195 (11%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHV--------LFVGPPGLGKTTLAQVVARELG 79
           ++  G  +  + ++  +E      +    +        L  GPPG GKT +A+ VA E G
Sbjct: 215 DDIGGCKKQMAQIRELVELPLRHPQLFKSIGIKPPKGILMYGPPGTGKTIMARAVANETG 274

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAMED 131
             F   +GP I          +L       E     ++FIDEI  ++   ++        
Sbjct: 275 AFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPSIIFIDEIDSIAPKRDK-----TNG 329

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
                +V +  +        S   +IAAT R   +   L+   RF   + +   + E   
Sbjct: 330 EVERRVVSQLLTLMDGMKARSNVVVIAATNRPNSIDPALRRFGRFDREVDIGVPDAEGRL 389

Query: 190 TIVQRGAKLTGLAVT 204
            I++   K   LA  
Sbjct: 390 EILRIHTKNMKLADD 404



 Score = 48.5 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 43/195 (22%), Positives = 69/195 (35%), Gaps = 20/195 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
           T ++  G     + LK  +E      +            VLF GPPG GKT LA+ VA E
Sbjct: 486 TWDDIGGLDNIKNELKETVEYPVLHPDQYQKFGLAPTKGVLFFGPPGTGKTLLAKAVATE 545

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAM 129
           +  NF S  GP +          ++  +          V+F+DE+  ++         A 
Sbjct: 546 VSANFISVKGPELLSMWYGESESNIRDIFDKARAAAPTVVFLDELDSIAKARGGSHGDA- 604

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                D +V +  +            +I AT R   +   L    R    I +   +   
Sbjct: 605 -GGASDRVVNQLLTEMDGMNAKKNVFVIGATNRPDQIDPALLRPGRLDQLIYVPLPDEPA 663

Query: 188 LKTIVQRGAKLTGLA 202
             +I+Q   + T L 
Sbjct: 664 RLSILQAQLRNTPLE 678


>gi|254168504|ref|ZP_04875348.1| ATPase, AAA family protein [Aciduliprofundum boonei T469]
 gi|197622559|gb|EDY35130.1| ATPase, AAA family protein [Aciduliprofundum boonei T469]
          Length = 1009

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 48/188 (25%), Positives = 74/188 (39%), Gaps = 15/188 (7%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN-FRS 84
           TLE+     E    ++  IE    R      VLF GPPG+GKT +A+ +A ELG    + 
Sbjct: 757 TLEDVILDEETMEEIRDIIE--DVRDGEATSVLFYGPPGVGKTRIAEAMAGELGYELIKI 814

Query: 85  TSGPVIAK-AGDLAALLTNLED-----RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138
           T   +++K  G+    L    D     R VLFIDEI  L    E     +   +++  + 
Sbjct: 815 TPSEILSKWVGESEKNLKEYFDKAKNGRVVLFIDEIDGLGNRRE----ASTNTWEITFIN 870

Query: 139 GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGA 196
               S   +  N +   LI AT  +  +   L    RF   I +   + E    + +   
Sbjct: 871 QFMQSVEDLMKNGNYVLLIGATNYIDRVDRALIRPGRFNEKIEIKPPDSELRAMLFKYYV 930

Query: 197 KLTGLAVT 204
           +       
Sbjct: 931 EKLAKDRE 938


>gi|149007189|ref|ZP_01830853.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae
           SP18-BS74]
 gi|147761227|gb|EDK68194.1| DNA polymerase III subunits gamma and tau [Streptococcus pneumoniae
           SP18-BS74]
          Length = 529

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 49/275 (17%), Positives = 84/275 (30%), Gaps = 58/275 (21%)

Query: 38  SNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVNFRS------------ 84
             LK  +E      E + H  LF GP G GKT++A++ A+ +    +             
Sbjct: 3   KTLKQAVE-----QEKISHAYLFSGPRGTGKTSVAKIFAKAMNCPNQVGGEPCNNCYICQ 57

Query: 85  ------------TSGPVIAKAGDLAALLTN------LEDRDVLFIDEIHRLSIIVEEILY 126
                                 ++  +         L    V  IDE+H LS      L 
Sbjct: 58  AVTDGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLARYKVYIIDEVHMLSTGAFNALL 117

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
             +E+                         I ATT +  +   +  R       +    +
Sbjct: 118 KTLEEPT------------------QNVVFILATTELHKIPATILSRVQRFEFKSIKTQD 159

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
            +K  +    +   ++   EA   IA R+ G  R A  +L +     +     T   E  
Sbjct: 160 -IKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNELTTAISEEI 218

Query: 247 DAALLRLAIDKM--GFDQLDL-RYLTMIARNFGGG 278
              +   A+D       Q D+ + L+ +   F  G
Sbjct: 219 TGTISLSALDDYVAALSQQDVPKALSCLNLLFDNG 253


>gi|24372780|ref|NP_716822.1| cell division protein FtsH [Shewanella oneidensis MR-1]
 gi|24346861|gb|AAN54267.1|AE015563_7 cell division protein FtsH [Shewanella oneidensis MR-1]
          Length = 649

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 93/250 (37%), Gaps = 23/250 (9%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAA-------KARAEALDHVLFVGPPGLGKTTLAQVVARE 77
            T  +  G  EA   +K  ++         K        VL VGPPG GKT LA+ +A E
Sbjct: 151 TTFADVAGCDEAKEEVKELVDYLRDPTKFQKLGGRIPTGVLMVGPPGTGKTLLAKAIAGE 210

Query: 78  LGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
             V F + SG       V   A  +  +    +     ++FIDEI  +       L    
Sbjct: 211 SKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKSAPCIIFIDEIDAVGRQRGAGLGGGH 270

Query: 130 EDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           ++ +  L  M+ E       +       +IAAT R  +L + L    RF   + +   ++
Sbjct: 271 DEREQTLNQMLVEMDGFEGNEG----IIVIAATNRPDVLDSALLRPGRFDRQVVVGLPDV 326

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
              + I++   +   L+   +A+         +      L+     FA   + + +  E 
Sbjct: 327 RGREQILKVHMRKVPLSEDVKASVIARGTPGFSGADLANLVNEAALFAARGNRRVVGMEE 386

Query: 246 ADAALLRLAI 255
            + A  ++ +
Sbjct: 387 FERAKDKIMM 396


>gi|117919472|ref|YP_868664.1| membrane protease FtsH catalytic subunit [Shewanella sp. ANA-3]
 gi|117611804|gb|ABK47258.1| membrane protease FtsH catalytic subunit [Shewanella sp. ANA-3]
          Length = 657

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 93/250 (37%), Gaps = 23/250 (9%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAA-------KARAEALDHVLFVGPPGLGKTTLAQVVARE 77
            T  +  G  EA   +K  ++         K        VL VGPPG GKT LA+ +A E
Sbjct: 159 TTFADVAGCDEAKEEVKELVDYLRDPTKFQKLGGRIPTGVLMVGPPGTGKTLLAKAIAGE 218

Query: 78  LGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
             V F + SG       V   A  +  +    +     ++FIDEI  +       L    
Sbjct: 219 SKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKSAPCIIFIDEIDAVGRQRGAGLGGGH 278

Query: 130 EDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           ++ +  L  M+ E       +       +IAAT R  +L + L    RF   + +   ++
Sbjct: 279 DEREQTLNQMLVEMDGFEGNEG----IIVIAATNRPDVLDSALLRPGRFDRQVVVGLPDV 334

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
              + I++   +   L+   +A+         +      L+     FA   + + +  E 
Sbjct: 335 RGREQILKVHMRKVPLSEDVKASVIARGTPGFSGADLANLVNEAALFAARGNRRVVGMEE 394

Query: 246 ADAALLRLAI 255
            + A  ++ +
Sbjct: 395 FERAKDKIMM 404


>gi|317180480|dbj|BAJ58266.1| DNA polymerase III subunits gamma and tau [Helicobacter pylori F32]
          Length = 571

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 78/256 (30%), Gaps = 59/256 (23%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA------- 75
           RP+   E  GQ      L + ++  +         LF G  G GKT+ +++ A       
Sbjct: 9   RPKHFSELVGQESVAKTLSLALDNQRLANAY----LFSGLRGSGKTSSSRIFARALMCEE 64

Query: 76  -----------------RELGVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFID 112
                                ++     G       D+  L+             +  ID
Sbjct: 65  GPKSVPCDTCTQCQSALNNHHIDIIEMDGASNRGIDDVRNLIEQTRYKPSFGRYKIFIID 124

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H  +      L   +E+                    S    + ATT    L   +  
Sbjct: 125 EVHMFTTEAFNALLKTLEE------------------PPSHVKFLLATTDALKLPATILS 166

Query: 173 R---FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           R   F          I  LKTI++       ++    A  ++A   +G+ R    LL + 
Sbjct: 167 RTQHFRFKKIPENSVISHLKTILE----KEQVSYETSALEKLAHSGQGSLRDTITLLEQA 222

Query: 230 RDFAEVAHAKTITREI 245
            ++ + A  ++   E+
Sbjct: 223 INYCDNAITESKVAEM 238


>gi|294678708|ref|YP_003579323.1| cell division protease FtsH [Rhodobacter capsulatus SB 1003]
 gi|294477528|gb|ADE86916.1| cell division protease FtsH [Rhodobacter capsulatus SB 1003]
          Length = 631

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 91/249 (36%), Gaps = 23/249 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  EA   L+  +E        ++   +     L VGPPG GKT LA+ +A E 
Sbjct: 152 TFDDVAGIDEAKEELEEIVEFLRNPQKFSRLGGKIPKGALLVGPPGTGKTLLARAIAGEA 211

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F + SG       V   A  +  +    +     ++FIDEI  +       +    +
Sbjct: 212 GVPFFTISGSDFVEMFVGVGASRVRDMFDQAKKNAPCIVFIDEIDAVGRARGVGIGGGND 271

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E     + +       ++AAT R  +L   L    RF   I +   +I+
Sbjct: 272 EREQTLNQLLVEMDGFEANEG----IIIVAATNRKDVLDPALLRPGRFDRQIHVPNPDIK 327

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I+   A         +           +      L+      A     + +T E  
Sbjct: 328 GREKILSVHANKIPRGPDVDLRTIARGTPGFSGADLANLVNEAALMAARVGRRFVTMEDF 387

Query: 247 DAALLRLAI 255
           + A  ++ +
Sbjct: 388 ENAKDKVMM 396


>gi|288556893|ref|YP_003428828.1| stage V sporulation protein K [Bacillus pseudofirmus OF4]
 gi|288548053|gb|ADC51936.1| stage V sporulation protein K [Bacillus pseudofirmus OF4]
          Length = 317

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 48/215 (22%), Positives = 73/215 (33%), Gaps = 29/215 (13%)

Query: 25  RTLEEFTGQVEACSNLKVFI----------EAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           + LEE+ G  E    +K             E     ++ + H++F G PG GKTT+A+++
Sbjct: 49  KELEEYVGLNEVKRLIKEIYAWLYINQRRKELGLRASKQVLHMIFKGNPGTGKTTVARMI 108

Query: 75  ARELGVNFRSTSGPVIA-------------KAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
           A           G +I               A     ++       VLFIDE + LS   
Sbjct: 109 ASFFHEMNVLAKGQLIEVERADLVGEYIGHTAQKTREVIKKANGG-VLFIDEAYSLSRGG 167

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLN 181
           E+       D  +  M  +      +     R      +     L   L  RF I I   
Sbjct: 168 EKDFGKEAIDTLVKAMEDQQHEFVLILAGYQREMEYFLS-----LNPGLPSRFPIAIDFP 222

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSR 216
            Y  E+L  +  R        +TDEA   +    R
Sbjct: 223 NYTSEELLEMAARMVIEREYELTDEAKRHVKEHLR 257


>gi|282163105|ref|YP_003355490.1| replication factor C large subunit [Methanocella paludicola SANAE]
 gi|282155419|dbj|BAI60507.1| replication factor C large subunit [Methanocella paludicola SANAE]
          Length = 506

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/256 (18%), Positives = 87/256 (33%), Gaps = 33/256 (12%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
                RP +L    G   A   L+ + E   +  +A    +  G PG+GKT+ A  +A +
Sbjct: 9   WAEKYRPVSLSGVLGNDAAVKALRKWAETFGSGKKA---AILYGGPGIGKTSAALALAHD 65

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLE---------DRDVLFIDEIHRLSIIVEEILYPA 128
           +G ++   +         +  +  +           +R +L +DE   L    +      
Sbjct: 66  MGWDYIEMNASDQRTKDAINKVAGSASKTGTFGGTNERRLLILDEADNLHGNYDRG---- 121

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
                     GE      +K       LIA       L+ PL+D               +
Sbjct: 122 ----------GEAAIINVIKNTNQPIILIA--NDFYALSKPLRDAAEPIQFRALLSTSIV 169

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV---RDFAEVAHAKTITREI 245
           K  +++      +    EA  +IA R+    R A   L+     R+   +A   T  R++
Sbjct: 170 KA-LKKICAAENIKCQPEALMKIAERTN-DMRSAINDLQAAAMGREEVTLADVSTGERDV 227

Query: 246 ADAALLRLAIDKMGFD 261
            ++    + +   G D
Sbjct: 228 PESIFKVMGLIFRGDD 243


>gi|156044192|ref|XP_001588652.1| hypothetical protein SS1G_10199 [Sclerotinia sclerotiorum 1980]
 gi|154694588|gb|EDN94326.1| hypothetical protein SS1G_10199 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 781

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/179 (24%), Positives = 70/179 (39%), Gaps = 17/179 (9%)

Query: 27  LEEFTGQVE--ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRS 84
           L E   Q+E      +K     A+    A   VL  GPPG GKT LA+ VA E   NF S
Sbjct: 511 LHEVREQLEMAIVEPIKRPESFARVGITAPTGVLLWGPPGCGKTLLAKAVANESKANFIS 570

Query: 85  TSGPVIAK--AGDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAMEDFQLDL 136
             GP +     G+    +  + +R       +LF DE+  L    E+ L  A       L
Sbjct: 571 IKGPELLNKYVGESERAVRQVFERARSSVPCILFFDELDALVPKREDSLSEASSKVVNTL 630

Query: 137 MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQ 193
           +      +    I      ++ AT R  ++   +    R G  + ++    ++   I++
Sbjct: 631 LTELDGLSNRAGI-----YVVGATNRPDMIDPAMLRPGRLGTSVFVDLPSPDERVEILK 684



 Score = 52.0 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 55/254 (21%), Positives = 83/254 (32%), Gaps = 28/254 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEA--------AKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +LE   G       L   +           +   +    VL  GPPG GKT +A   A E
Sbjct: 188 SLENLGGVDNVIEELNELVAMPMLYPETYIRTGIQPPRGVLLHGPPGCGKTMIANAFAAE 247

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
           +GV+F   S P +           +  +    +     ++FIDEI  + +   E     M
Sbjct: 248 IGVSFIPISAPSLVAGMSGESEKKIRDVFDEAKRMAPCLVFIDEIDVI-MGKRESAQREM 306

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
           E   +  M+         K       +IAAT R   L   L+   RF   I L       
Sbjct: 307 EKRIVAQMLTSMDDMALEKTGGKPVIIIAATNRPDSLDPALRRAGRFNKEINLGVPNEAA 366

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            + I++   +   L             ++ TP   G  L  V   A      T   +   
Sbjct: 367 REKILRALTQKLALPDD----FNFHALAKMTPGFVGADLNDVVSVA-----GTEAMKRMM 417

Query: 248 AALLRLAIDKMGFD 261
           A L +  +  M  D
Sbjct: 418 AVLKQQTVSTMELD 431


>gi|42560608|ref|NP_975059.1| DNA polymerase III gamma-tau subunits [Mycoplasma mycoides subsp.
           mycoides SC str. PG1]
 gi|42492104|emb|CAE76701.1| DNA polymerase III gamma-tau subunits [Mycoplasma mycoides subsp.
           mycoides SC str. PG1]
          Length = 652

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 67/207 (32%), Gaps = 39/207 (18%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           + +++     RP+      G       L+  I+  +        +LF G  G GKT++A+
Sbjct: 7   TNKESLYRTYRPKDFNSVAGHNNIKEILEKQIKDNRINHA----LLFSGQRGTGKTSVAR 62

Query: 73  VVARELGVNFRSTS------------------------GPVIAKAGDLAALLTNL----- 103
           + A+ +     + S                                ++  +  ++     
Sbjct: 63  IFAKTINCLNLTNSTACEQCNNCKLANQNQLIDIIEIDAASNNGVDEIREIKNSVSTLPL 122

Query: 104 -EDRDVLFIDEIHRLSIIVEEILYPAMEDFQL--DLMVGEGPSARSVKINLSRFTLIAAT 160
                V  IDE+H L+      L   +E+  +    ++      +  +  LSR  +   T
Sbjct: 123 NSKYKVYIIDEVHMLTKQAFNALLKTLEEPPVYAIFILATTEFNKIPQTILSRCQIFNFT 182

Query: 161 TRVGLLTNPLQDRFGIPIRLNFYEIED 187
                  N L++R         Y+IE 
Sbjct: 183 KI---DKNSLKNRLQYIANQENYQIEK 206


>gi|134110740|ref|XP_775834.1| hypothetical protein CNBD2440 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50258500|gb|EAL21187.1| hypothetical protein CNBD2440 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 1104

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 49/254 (19%), Positives = 87/254 (34%), Gaps = 37/254 (14%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  F+   K R      +L  VGPPG+GKT++ + +A+ LG  F   S
Sbjct: 563 EDHYGLKDVKDRILEFMAIGKLRGSVEGKILCLVGPPGVGKTSIGKSIAKALGRQFFRFS 622

Query: 87  GPVIAKAGDLAALLTN----------------LEDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ ++S            
Sbjct: 623 VGGLTDVAEIKGHRRTYIGAMPGKPIQALKKVATENPLILIDEVDKISKAYNGDPASALL 682

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD  +        V I+LS+   +     +  +  PL DR  +     +
Sbjct: 683 EMLDPEQNKSFLDHYL-------DVPIDLSKVLFVCTANVLETIPGPLLDRMEVLEVSGY 735

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
              E +  I +R            AA    +     P     L+R     + V + K   
Sbjct: 736 VSAEKM-NIAER----YLSPQAKVAAGLEDVNIELEPGAIEALIRYYCRESGVRNLKKHI 790

Query: 243 REIADAALLRLAID 256
            +I   A  ++  D
Sbjct: 791 DKIYRKAAFKIVTD 804


>gi|328870426|gb|EGG18800.1| cell division cycle protein 48 [Dictyostelium fasciculatum]
          Length = 798

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 68/198 (34%), Gaps = 29/198 (14%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARA--------EALDHVLFVGPPGLGKTTLAQVVARELG 79
           ++  G  +    ++  +E              +    +L  GPPG GKT +A+ VA E G
Sbjct: 201 DDIGGVRKQLGQIRELVELPLRHPQLFKNIGVKPPKGILLYGPPGCGKTMIARAVANETG 260

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIV---EEILYPA 128
             F   +GP I          +L       E     ++FIDEI  ++      +  +   
Sbjct: 261 AFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAIIFIDEIDSIAPKREKTQGEVERR 320

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           +    L LM G    A  + I         AT R   +   L+   RF   I +   +  
Sbjct: 321 IVSQLLTLMDGLKSRAHVIVI--------GATNRPNSIDPALRRFGRFDREIDITIPDAT 372

Query: 187 DLKTIVQRGAKLTGLAVT 204
               I++   K   L   
Sbjct: 373 GRLEIMRIHTKNMKLDED 390



 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 72/227 (31%), Gaps = 20/227 (8%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVAR 76
            T E+  G       L+  ++      E            VLF GPPG GKT LA+ +A 
Sbjct: 471 TTWEDIGGLEGVKRELRETVQYPVEHPEKFRKFGMQPSKGVLFYGPPGCGKTLLAKAIAS 530

Query: 77  ELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPA 128
           E   NF S  GP +          ++  L          VLF DE+  ++          
Sbjct: 531 ECQANFISIKGPELLTMWFGESESNVRELFDKARQAAPCVLFFDELDSIAKSRGGS--AG 588

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
                 D ++ +  +            +I AT R  ++   +    R    I +   ++ 
Sbjct: 589 DAGGAGDRVINQILTEMDGMGVKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDLP 648

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
               I++     + +A   +           +      + +R    A
Sbjct: 649 SRVAILKANLNKSPVAKDVDLEFLAQKTHGYSGADLTGICQRAVKLA 695


>gi|308182878|ref|YP_003927005.1| DNA polymerase III subunits gamma and tau [Helicobacter pylori
           PeCan4]
 gi|308065063|gb|ADO06955.1| DNA polymerase III subunits gamma and tau [Helicobacter pylori
           PeCan4]
          Length = 592

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 78/256 (30%), Gaps = 59/256 (23%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA------- 75
           RP+   E  GQ      L + ++  +         LF G  G GKT+ +++ A       
Sbjct: 9   RPKHFSELVGQESVAKTLSLALDNQRLANAY----LFSGLRGSGKTSSSRIFARALMCEE 64

Query: 76  -----------------RELGVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFID 112
                                ++     G       D+  L+             +  ID
Sbjct: 65  GPKAVPCDTCIQCQSALNNHHIDIIEMDGASNRGIDDVRNLIEQTRYKPSFGRYKIFIID 124

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H  +      L   +E+                    S    + ATT    L   +  
Sbjct: 125 EVHMFTTEAFNALLKTLEE------------------PPSHVKFLLATTDALKLPATILS 166

Query: 173 R---FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           R   F          I  LKTI++       ++    A  ++A   +G+ R    LL + 
Sbjct: 167 RTQHFRFKKIPENSVISHLKTILE----KEQVSYETSALEKLAHSGQGSLRDTITLLEQA 222

Query: 230 RDFAEVAHAKTITREI 245
            ++ + A  ++   E+
Sbjct: 223 INYCDNAITESKVAEM 238


>gi|301320577|gb|ADK69220.1| DNA polymerase III, subunit gamma and tau [Mycoplasma mycoides
           subsp. mycoides SC str. Gladysdale]
          Length = 648

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 67/207 (32%), Gaps = 39/207 (18%)

Query: 13  SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQ 72
           + +++     RP+      G       L+  I+  +        +LF G  G GKT++A+
Sbjct: 3   TNKESLYRTYRPKDFNSVAGHNNIKEILEKQIKDNRINHA----LLFSGQRGTGKTSVAR 58

Query: 73  VVARELGVNFRSTS------------------------GPVIAKAGDLAALLTNL----- 103
           + A+ +     + S                                ++  +  ++     
Sbjct: 59  IFAKTINCLNLTNSTACEQCNNCKLANQNQLIDIIEIDAASNNGVDEIREIKNSVSTLPL 118

Query: 104 -EDRDVLFIDEIHRLSIIVEEILYPAMEDFQL--DLMVGEGPSARSVKINLSRFTLIAAT 160
                V  IDE+H L+      L   +E+  +    ++      +  +  LSR  +   T
Sbjct: 119 NSKYKVYIIDEVHMLTKQAFNALLKTLEEPPVYAIFILATTEFNKIPQTILSRCQIFNFT 178

Query: 161 TRVGLLTNPLQDRFGIPIRLNFYEIED 187
                  N L++R         Y+IE 
Sbjct: 179 KI---DKNSLKNRLQYIANQENYQIEK 202


>gi|294101778|ref|YP_003553636.1| ATP-dependent metalloprotease FtsH [Aminobacterium colombiense DSM
           12261]
 gi|293616758|gb|ADE56912.1| ATP-dependent metalloprotease FtsH [Aminobacterium colombiense DSM
           12261]
          Length = 639

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 56/252 (22%), Positives = 89/252 (35%), Gaps = 28/252 (11%)

Query: 23  RPR-TLEEFTGQVEACSNLKVFIEAAKARAE-------ALDHVLFVGPPGLGKTTLAQVV 74
           RP+ T ++  G  E+   L   I+  +   +           VL +GPPG GKT LA+  
Sbjct: 150 RPKVTFDDVAGCDESKEELSEVIQFLRDPGKFRALGAKVPKGVLLLGPPGTGKTLLARAA 209

Query: 75  ARELGVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           A E  V F S SG            A+  DL       +   ++FIDE+  +       L
Sbjct: 210 AGEADVPFFSVSGSDFVEMFVGVGAARVRDLFEQARKYQP-CIIFIDEMDAVGRHRGAGL 268

Query: 126 YPAMEDFQLD---LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRL 180
               ++ +     L+V       S  I L     IAAT R  +L   L    RF   I +
Sbjct: 269 GGGHDEREQTLNQLLVELDGFDESTGIIL-----IAATNRPDILDPALLRPGRFDRHIVV 323

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           +  +++  + I+    +   +A   +                  L+      A  A    
Sbjct: 324 DRPDVKGREEILAVHVRNKKIADDVDLGVVARRTPGFVGADLANLVNEAALLAARAGKSL 383

Query: 241 ITREIADAALLR 252
           IT    +  + R
Sbjct: 384 ITMAEFEEGIDR 395


>gi|240168347|ref|ZP_04747006.1| hypothetical protein MkanA1_03482 [Mycobacterium kansasii ATCC
           12478]
          Length = 573

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 62/283 (21%), Positives = 101/283 (35%), Gaps = 32/283 (11%)

Query: 31  TGQVEACSNLKVF--------IEAAKARAEALD--HVLFVGPPGLGKTTLAQVVARE-LG 79
            G     + ++ +        + AAK    A    H++F GPPG GKTT+A+VVA    G
Sbjct: 294 IGLTRVKAQIERYRAATMMARVRAAKGMKVAQPSKHMIFTGPPGTGKTTIARVVANILAG 353

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLE----DRDV-------LFIDEIHRLSIIVEEILYPA 128
           +   +    V     D  A           + +       LFIDE + L    +    P 
Sbjct: 354 LGVIAEPKLVETSRKDFVAEYEGQSAVKTAKTIDQALGGVLFIDEAYALVQERDGRTDPF 413

Query: 129 MEDFQLDLMV-GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
            ++    L+   E    R V I     + I    R+      L+ RF   I  + Y  E+
Sbjct: 414 GQEAMDTLLARMENDRDRLVVIIAGYSSDID---RLLETNEGLRSRFATRIEFDTYSPEE 470

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           L  I +  A      ++ EAA E    ++           R R   ++A      R++ +
Sbjct: 471 LLEIAKVIANANDSTLSAEAADEFLRAAKMLHERTL----RGRPALDIAGNGRYARQLVE 526

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLS 290
           AA      D      +D+  L +       G    E I++  +
Sbjct: 527 AA--EQYRDMRLAQGIDIESLDVDRLQEINGADMAEAIASVHA 567


>gi|227540928|ref|ZP_03970977.1| cell division protein FtsH [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227183188|gb|EEI64160.1| cell division protein FtsH [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 776

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 55/244 (22%), Positives = 88/244 (36%), Gaps = 19/244 (7%)

Query: 26  TLEEFTGQVEACSNL---KVFIEAA----KARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +  +  G  +A   L   K F++      K  A+    VL  GPPG GKT +A+ VA E 
Sbjct: 176 SFADVAGADDALDELQEIKDFLQDPTIYEKLGAKIPRGVLLYGPPGTGKTLMARAVAGEA 235

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG       V   A  +  L     +    ++FIDEI  +       +    +
Sbjct: 236 GVPFYSISGSDFVEMFVGVGASRVRDLFKQARENSPCIIFIDEIDAVGRQRGSGMGGGHD 295

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
           + +  L   +         +     LIAAT R  +L   L    RF   I +   +++  
Sbjct: 296 EREQTL--NQLLVEMDGFGDREGVILIAATNRPDILDPALLRPGRFDRQIPVVNPDLKGR 353

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           + I++  AK    A   +        +  +      +L              IT +  + 
Sbjct: 354 EKILEVHAKGKPFAPDADIKSLAKRTAGMSGADLANVLNEAALLTARIGGNVITADALEE 413

Query: 249 ALLR 252
           A  R
Sbjct: 414 ATDR 417


>gi|126540548|emb|CAM46305.1| spermatogenesis associated 5 [Mus musculus]
          Length = 835

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 84/243 (34%), Gaps = 34/243 (13%)

Query: 29  EFTGQVEACSNLKVFIEAAK---ARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
           +  G     S LK   E  +    + E            +L  GPPG GKT +A+ VA E
Sbjct: 353 DMIG--GLNSQLKAIREIIELPLKQPELFKSYGIPAPRGLLLYGPPGTGKTMIARAVANE 410

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIV---EEILY 126
           +G      +GP I           L  +      R   ++FIDE+  L       +  + 
Sbjct: 411 VGAYVSVINGPEIISKFYGETEARLRQIFAEATLRHPSIIFIDELDALCPKREGAQSEVE 470

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
             +    L LM G G           R  ++ AT R   L   L+   RF   I +    
Sbjct: 471 KRVVASLLTLMDGIGSEGSEG-----RVLVLGATNRPQALDAALRRPGRFDKEIEIGIPN 525

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            +D   I+Q   KL           E+   +       G  L+ + + A +   + + R+
Sbjct: 526 AQDRLDILQ---KLLRRVPHLLTKAELLRLANNAHGYVGADLKALCNEAGLHALRRVLRK 582

Query: 245 IAD 247
             +
Sbjct: 583 QPN 585



 Score = 52.0 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 67/186 (36%), Gaps = 21/186 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIE--------AAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +  +  G       LK  +E          +   +    VL  GPPG  KT +A+ +A E
Sbjct: 625 SWSDIGGLENIKLKLKQAVEWPLKHPKSFNRMGIQPPKGVLLYGPPGCSKTMIAKALANE 684

Query: 78  LGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAM 129
            G+NF +  GP +     G+    +  +  +       ++F DE+  L++          
Sbjct: 685 SGLNFLAIKGPELMNKYVGESERAVREIFRKARAVAPSIIFFDELDALAVERGSSSGAGN 744

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                D ++ +  +       L   T++AAT R   +   L    R    I +   +   
Sbjct: 745 ---VADRVLAQLLTEMDGIEQLKNVTVLAATNRPDRIDKALMRPGRIDRIIYVPLPDAAT 801

Query: 188 LKTIVQ 193
            + I+ 
Sbjct: 802 RREILN 807


>gi|329667853|gb|AEB93801.1| hypothetical protein LJP_1481c [Lactobacillus johnsonii DPC 6026]
          Length = 661

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 50/264 (18%), Positives = 88/264 (33%), Gaps = 36/264 (13%)

Query: 25  RTLEEFTGQVEACSNLKVFI----------EAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           + L+E  G       +K FI          E     +    H LF+G PG GKTT+A++V
Sbjct: 402 QQLDEMIGLETVKQQVKEFIAVTVLNKKREEKGLNTSSQTLHSLFLGNPGTGKTTVARIV 461

Query: 75  AR--ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD----------VLFIDEIHRLSIIVE 122
                             ++A  +A  +    ++           +LF+DE + L+   +
Sbjct: 462 GHVLYEKGVIAEDKLIETSRADLVAGYVGQTAEKTRKVLESALGGILFVDEAYTLASGGQ 521

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP-LQDRFGIPIRLN 181
                   D  L  M        ++ I  + +T         L TNP L+ R        
Sbjct: 522 NDFGKEAIDEILKFM---EDHRSNIMIIFAGYTNDM---EKFLETNPGLRSRIPNKFDFE 575

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEA-ACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            Y ++++  I     K     V   + A  +          +    R VR+     + K 
Sbjct: 576 DYTVDEMVQIGLFSLKKQQYHVNPSSYADLLKNNLSKDNDNSNG--RWVRNL----NDKI 629

Query: 241 ITREIADAALLRLAIDKMGFDQLD 264
           I ++    AL     ++   +  D
Sbjct: 630 IKKQAVRVALTDSYSEEDLINITD 653


>gi|289679160|ref|ZP_06500050.1| recombination factor protein RarA [Pseudomonas syringae pv.
           syringae FF5]
          Length = 308

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 56/198 (28%), Gaps = 36/198 (18%)

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197
             E PS       LSR  +    +        L +R                   +RG  
Sbjct: 7   TTENPSFELNNALLSRARVYVLKSLDEAALRKLVNRALTE---------------ERGLG 51

Query: 198 LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257
              LA++DE    +   + G  R    LL    D AE         EI    L  L  D 
Sbjct: 52  KRQLALSDEGFAMLMSAADGDGRRMLNLLENASDLAE------DGSEIDVGLLQSLLGDS 105

Query: 258 MGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTP--R 315
                          R   GG    + ISA     R +  D    +  +       P   
Sbjct: 106 R-------------RRFDKGGEAFYDQISALHKSIRGSNPDAALYWFARMIDGGCDPLYL 152

Query: 316 GRLLMPIAWQHLGIDIPH 333
            R ++ +A + +G   P 
Sbjct: 153 ARRVVRMASEDIGNADPR 170


>gi|282856880|ref|ZP_06266138.1| cell division protease FtsH [Pyramidobacter piscolens W5455]
 gi|282585298|gb|EFB90608.1| cell division protease FtsH [Pyramidobacter piscolens W5455]
          Length = 607

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 54/245 (22%), Positives = 92/245 (37%), Gaps = 26/245 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARA-------EALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G+ EA  NL   +E             +    +L VGPPG GKT LA+ VA E 
Sbjct: 162 KFSDVAGEDEAKENLTEIVEYLHNPGRYRDIGAKMPKGILLVGPPGTGKTMLAKAVAGES 221

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRL-SIIVEEILYPAM 129
            V F S SG           A  +  L    +++   ++FIDEI  + +     ++    
Sbjct: 222 NVPFFSMSGSEFVEMFVGMGASKVRDLFKQAKEKAPCIVFIDEIDAIGTKRSGNVMGNDE 281

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            +  L+ ++ E               ++AAT R   L   L    RF   + +   +++ 
Sbjct: 282 REQTLNQLLTEMDGFEDNTG----VIILAATNRPESLDPALTRPGRFDRRVPVELPDLKG 337

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            + I++  AK   L     +  +    +R     +G  L  + + A +   +   RE   
Sbjct: 338 REDILKVHAKKIKLE----SGVDFNKVARMASGASGAELANIVNEAALRAVRDGRREATQ 393

Query: 248 AALLR 252
           A L  
Sbjct: 394 ADLEE 398


>gi|242398512|ref|YP_002993936.1| CDC48/VCP like protein, AAA superfamily [Thermococcus sibiricus MM
           739]
 gi|242264905|gb|ACS89587.1| CDC48/VCP like protein, AAA superfamily [Thermococcus sibiricus MM
           739]
          Length = 810

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 57/249 (22%), Positives = 89/249 (35%), Gaps = 29/249 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
           T E+  G  +A   ++  IE      E            VL  GPPG GKT LA+ VA E
Sbjct: 180 TYEDIGGLKDAIQKIREMIELPLKHPEVFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANE 239

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM 129
              +F + +GP I           L  +    E+    ++FIDEI  ++    E+     
Sbjct: 240 ANAHFIAINGPEIMSKYYGESEERLREVFKESEENAPSIIFIDEIDAIAPKRGEVTGEVE 299

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
           +     L+            +  +  +I AT R   L   L+   RF   I +   + + 
Sbjct: 300 KRVVAQLLT-----LMDGLKSRGKVIVIGATNRPDALDPALRRPGRFDREIEIGVPDKQG 354

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            K I+Q   +   +   D    E+    +       +   R RD AE A  K       +
Sbjct: 355 RKEILQIHTRGMPIE-PDFRKEEVKKVLKE-----LKQDDRFRDAAERALYKIEDLADKE 408

Query: 248 AALLRLAID 256
             + R   D
Sbjct: 409 EIIRRAIRD 417



 Score = 50.5 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 48/209 (22%), Positives = 76/209 (36%), Gaps = 24/209 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVARE 77
              +  G  E    L+  +E      EA           +L  GPPG GKT LA+ VA E
Sbjct: 516 RWNDIGGLEEVKQQLREAVEWPLKYPEAFMAMGINPPKGILLYGPPGTGKTLLAKAVATE 575

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLED--RDVLFIDEIHRLSIIVEEILYPAM 129
              NF    GP +          ++  +          V+FIDEI  ++      +    
Sbjct: 576 SEANFIGIRGPEVLSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRGSDV---- 631

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            +   D ++ +  +        S   +IAAT R  +L   L    RF   I +   +++ 
Sbjct: 632 -NRVTDRLINQLLTEMDGIEENSGVVVIAATNRPDILDPALLRPGRFDRIILVPAPDVKA 690

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSR 216
              I +   +   LA  D    E+A R+ 
Sbjct: 691 RLEIFKVHTRNVPLA-KDVNLEELAKRTE 718


>gi|218884381|ref|YP_002428763.1| AAA family ATPase, CDC48 subfamily [Desulfurococcus kamchatkensis
           1221n]
 gi|218765997|gb|ACL11396.1| AAA family ATPase, CDC48 subfamily [Desulfurococcus kamchatkensis
           1221n]
          Length = 729

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 49/218 (22%), Positives = 82/218 (37%), Gaps = 30/218 (13%)

Query: 24  PR-TLEEFTGQVEACSNLKVFIEAA--------KARAEALDHVLFVGPPGLGKTTLAQVV 74
           PR T E+  G       ++  IE          K   E    +L  GPPG GKT LA+ +
Sbjct: 169 PRVTFEDIGGLGNIIDKIREMIEIPLKYRKVFRKLGIEPPKGILLYGPPGTGKTLLAKAL 228

Query: 75  ARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD-----VLFIDEIHRLSIIVEE 123
           A E+   F + +GP I           L  +    + +      ++FIDEI  ++   +E
Sbjct: 229 ANEVNAYFVTINGPEIMSKYYGESEQRLREIFKLAKKKSRKNPAIIFIDEIDAIAPKRDE 288

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLN 181
           ++          L+     +      +     +IAAT R   L   L+   RF   I + 
Sbjct: 289 VVGEVERRVVAQLL-----ALMDGLESRGNVIVIAATNRPNALDPALRRPGRFDREIEIP 343

Query: 182 FYEIEDLKTIVQ---RGAKLTGLAVTDEAACEIAMRSR 216
             + +    I+Q   R  +  G+   D    ++A  + 
Sbjct: 344 MPDKKGRLEILQIHTRRLRELGILSEDVDLNKLAEITH 381



 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/152 (25%), Positives = 60/152 (39%), Gaps = 14/152 (9%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLAALLTNLEDR--- 106
           +    VL  GPPG GKT LA+ VA E G NF +  GP I     G+    +  +  +   
Sbjct: 486 KPPRGVLLYGPPGCGKTLLAKAVATESGANFIAVKGPEIMSKWVGESERAIREIFRKARL 545

Query: 107 ---DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
               V+F DEI  ++ +          +  +  ++ E          L    ++AAT R 
Sbjct: 546 YAPVVIFFDEIDAIASLRGIETDSGASERVVTQLITE----MDGIQKLENVVVLAATNRP 601

Query: 164 GLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQ 193
            LL   L    RF   I +   +      I++
Sbjct: 602 DLLDPALLRPGRFDKLIYVPPPDFNARLEILR 633


>gi|167533059|ref|XP_001748210.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163773330|gb|EDQ86971.1| predicted protein [Monosiga brevicollis MX1]
          Length = 291

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 81/205 (39%), Gaps = 24/205 (11%)

Query: 49  ARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA-----KAGDLAALLTNL 103
           + ++A+  +L  GPPG GKT LA+ VA E G  F +     I+     +A  +A  +  L
Sbjct: 25  SASQAVKGLLLFGPPGTGKTMLAKAVATETGATFLNVDSASISSKWYGEAEKMARAVFTL 84

Query: 104 EDR---DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAAT 160
             +    ++FIDEI  L    ++     +   +  LM      + +      R  +I AT
Sbjct: 85  ARKLAPTIIFIDEIDSLLSARDDTERSTIASVKTTLMREWDGLSTTAD----RVLVIGAT 140

Query: 161 TRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ---RGAKLTGLAVTDEAACEIAMRSRG 217
            R   L   +  R    + ++  +  +  +I++   RG +L      D  A  +   S  
Sbjct: 141 NRPYTLDEAILRRMPRRVMVDLPDKAERISILEVGLRGNRLAASLSLDTLAERLDSYSGS 200

Query: 218 TPR---------IAGRLLRRVRDFA 233
             R         IA    R + + A
Sbjct: 201 DVREVCREAAVSIANAKARELEEMA 225


>gi|225459599|ref|XP_002285868.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|302141794|emb|CBI18997.3| unnamed protein product [Vitis vinifera]
          Length = 360

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 67/234 (28%), Gaps = 40/234 (17%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP++L +     +    +             L H+L  GPPG GKT+    VAR
Sbjct: 38  PWVEKYRPQSLADVAAHRDIVDTIDRL-----TSENRLPHLLLYGPPGTGKTSTILAVAR 92

Query: 77  ----ELGVNFRSTSGPVIAKAGDLAALLTNLEDRD------------VLFIDEIHRLSII 120
               E   N          +  D+                       ++ +DE   ++  
Sbjct: 93  KLYGEQFHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGAKSSVKLVLLDEADAMTKD 152

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            +  L   +E +       +      +               V  +   LQ R     R 
Sbjct: 153 AQFALRRVIEKY------TKNTRFALIC------------NHVNKIIPALQSRC-TRFRF 193

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
              +   +   ++       L V++     +   S G  R A  +L+     ++
Sbjct: 194 APLDAVHVTERLKHVINAEKLDVSESGLAALVRLSSGDMRKALNILQSTHMASQ 247


>gi|149922005|ref|ZP_01910447.1| methanol dehydrogenase regulator [Plesiocystis pacifica SIR-1]
 gi|149817170|gb|EDM76650.1| methanol dehydrogenase regulator [Plesiocystis pacifica SIR-1]
          Length = 334

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 54/257 (21%), Positives = 78/257 (30%), Gaps = 37/257 (14%)

Query: 30  FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPV 89
             GQ E        I        A  H L  G PGLGKT L + VA  + ++F       
Sbjct: 30  VVGQDEV-------IRGVITCLLAGGHGLLEGVPGLGKTLLIRTVAEAVSMSFNRIQFTP 82

Query: 90  IAKAGDL--AALLTNLEDRD---------------VLFIDEIHRLSIIVEEILYPAMEDF 132
                D+   ++L   ED                 ++  DEI+R +   +  L  AM + 
Sbjct: 83  DLMPADILGTSILVEGEDGTVGRTLEYQPGPIFSNIVLADEINRATPKTQSALLEAMAEG 142

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPL----QDRFGIPIRLNFYEIEDL 188
           Q+          ++ K+    F L          T PL     DRF   I + F + ++L
Sbjct: 143 QVT------GGGKTRKLPQPFFVLATQNPLEQEGTYPLPEAQLDRFLFKINVEFPDEDEL 196

Query: 189 KTIVQRGAKLTG---LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
             I+ R           V D A      R      +   L R V       H        
Sbjct: 197 IAILDRTTGSKSSSAKPVLDGARLVEMQRLVRAMPVTASLTRYVVRVLRATHPGDKNATE 256

Query: 246 ADAALLRLAIDKMGFDQ 262
                +R      G   
Sbjct: 257 GVKQYVRFGGSPRGAQS 273


>gi|33591700|ref|NP_879344.1| chromosomal replication initiation protein [Bordetella pertussis
           Tohama I]
 gi|33598884|ref|NP_886527.1| chromosomal replication initiation protein [Bordetella
           parapertussis 12822]
 gi|61212733|sp|Q7VSE0|DNAA_BORPE RecName: Full=Chromosomal replication initiator protein DnaA
 gi|61212736|sp|Q7W2K5|DNAA_BORPA RecName: Full=Chromosomal replication initiator protein DnaA
 gi|33571343|emb|CAE44820.1| chromosomal replication initiator protein [Bordetella pertussis
           Tohama I]
 gi|33575014|emb|CAE39680.1| chromosomal replication initiator protein [Bordetella
           parapertussis]
 gi|332381119|gb|AEE65966.1| chromosomal replication initiation protein [Bordetella pertussis
           CS]
          Length = 469

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 78/228 (34%), Gaps = 35/228 (15%)

Query: 43  FIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL---GVNFRSTSGPVIAKAGDLAAL 99
            ++ A+    + + +   G  GLGKT L   +   +   G   R           D+   
Sbjct: 155 ALQVAENPGTSYNPLFLYGGVGLGKTHLIHAIGNAMVAAGTGVRVRYVHADQYVSDVVKA 214

Query: 100 LTN---------LEDRDVLFIDEIHRL---SIIVEEILYP--AMEDFQLDLMVGEGPSAR 145
                           D+L ID+I      +   EE  Y   AM   +  +++      +
Sbjct: 215 YQRKAFDDFKRYYHSLDLLLIDDIQFFSGKNRTQEEFFYAFEAMVAQRKQIIITSDTYPK 274

Query: 146 SVKINLSRFTLIAATTRVGLLTNPLQDRF--GIPIRLNFYEIEDLKTIVQRGAKLTGLAV 203
                            +  + + L  RF  G+ + +   E+E    I+ R A+  G+ +
Sbjct: 275 ----------------ELSGIDSRLISRFDSGLTVAIEPPELEMRVAILLRKAESEGVPM 318

Query: 204 TDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
            +E A  IA   R   R     LR+V  +A       +T ++   AL 
Sbjct: 319 PEEVAFFIAKHLRSNVRELEGALRKVLAYARFHGRDVLTVDVCKEALK 366


>gi|307579092|gb|ADN63061.1| ATP-dependent metalloprotease FtsH [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 643

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 54/246 (21%), Positives = 88/246 (35%), Gaps = 23/246 (9%)

Query: 26  TLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  EA   +   +       +  K   +    VL VGPPG GKT LA+ +A E 
Sbjct: 161 TFADVAGCDEAKEEVGELVDFLRDPTKFTKLGGKIPRGVLMVGPPGTGKTLLAKAIAGEA 220

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  +    +     ++FIDEI  +       L    +
Sbjct: 221 KVPFFSISGSDFVEMFVGVGASRVRDMFEQAKKHAPCIIFIDEIDAVGRHRGAGLGGGHD 280

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E       +       +IAAT R  +L   L    RF   + +   +++
Sbjct: 281 EREQTLNQLLVEMDGFEGGEG----VIVIAATNRPDVLDPALLRPGRFDRQVVVALPDVK 336

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I+    +   LA   E           +      L      FA  ++ K +     
Sbjct: 337 GREQILGVHMRKLLLANDVEPLVIARGTPGFSGADLANLCNEAALFAARSNEKEVRMNHF 396

Query: 247 DAALLR 252
           DAA  +
Sbjct: 397 DAARDK 402


>gi|302348206|ref|YP_003815844.1| Cell division control protein 48, AAA family [Acidilobus
           saccharovorans 345-15]
 gi|302328618|gb|ADL18813.1| Cell division control protein 48, AAA family [Acidilobus
           saccharovorans 345-15]
          Length = 740

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 83/229 (36%), Gaps = 24/229 (10%)

Query: 24  PR-TLEEFTGQVEACSNLKVFIEA--------AKARAEALDHVLFVGPPGLGKTTLAQVV 74
           P+ T E+  G  E  + ++  +E         ++   E    VL  GPPG GKT LA+ V
Sbjct: 185 PKVTYEDIGGLHEVIARIRELVELPLRHPELFSRLGIEPPKGVLLYGPPGTGKTLLAKAV 244

Query: 75  ARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILY 126
           A E    F + +GP I           L  +    +     ++FIDEI  ++   +E++ 
Sbjct: 245 ATESDAYFVAINGPEIMSKFYGESEQRLREIFEEAKKNAPAIIFIDEIDAIAPKRDEVIG 304

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
                     +V +  +         +  +I AT R   +   L+   RF   I +   +
Sbjct: 305 EVERR-----VVAQLLALMDGLEGRGQVIVIGATNRPNAIDPALRRPGRFDREIEVPVPD 359

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
            +    I+Q   +   LA   +      M    T      L +     A
Sbjct: 360 KQGRLEILQIHTRHMPLADDVDLEKLAEMTKGYTGADLAALAKEAAMHA 408



 Score = 53.9 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 91/247 (36%), Gaps = 24/247 (9%)

Query: 28  EEFTGQVEACSNLKVFIE--------AAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
            +  G  +    L+  +E         ++   E    VL  GPPG GKT LA+ VA E G
Sbjct: 463 SDIGGLEDVKQELREIVEWPLKYPNSFSRLGIEPPKGVLLFGPPGTGKTMLAKAVATESG 522

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAMED 131
            NF +  GP +           +  +          V+F DEI  ++ +        + +
Sbjct: 523 ANFIAIRGPEVLSKWVGESEKAIREIFKKARQYAPAVVFFDEIESIASLRGTEEDSNVGE 582

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
             +  ++ E         NL    +IAAT R  L+   L    RF   I +   + +   
Sbjct: 583 RIVSQLLTEI----DGITNLENVVVIAATNRPDLVDPALLRPGRFEKLIYVPPPDEKGRL 638

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA--EVAHAKTITREIAD 247
            I++   +   LA   + A    M +  T      L+R     A  E  ++  +  +  +
Sbjct: 639 EILKIHTRNVPLAEDVDLAELAKMTNGYTGADLAALVREAALTALREDINSPIVKFKHFE 698

Query: 248 AALLRLA 254
            AL ++ 
Sbjct: 699 QALNKVR 705


>gi|300681248|sp|Q5KI83|LONM_CRYNE RecName: Full=Lon protease homolog, mitochondrial; Flags: Precursor
          Length = 1104

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 49/254 (19%), Positives = 87/254 (34%), Gaps = 37/254 (14%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  F+   K R      +L  VGPPG+GKT++ + +A+ LG  F   S
Sbjct: 563 EDHYGLKDVKDRILEFMAIGKLRGSVEGKILCLVGPPGVGKTSIGKSIAKALGRQFFRFS 622

Query: 87  GPVIAKAGDLAALLTN----------------LEDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ ++S            
Sbjct: 623 VGGLTDVAEIKGHRRTYIGAMPGKPIQALKKVATENPLILIDEVDKISKAYNGDPASALL 682

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD  +        V I+LS+   +     +  +  PL DR  +     +
Sbjct: 683 EMLDPEQNKSFLDHYL-------DVPIDLSKVLFVCTANVLETIPGPLLDRMEVLEVSGY 735

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
              E +  I +R            AA    +     P     L+R     + V + K   
Sbjct: 736 VSAEKM-NIAER----YLSPQAKVAAGLEDVNIELEPGAIEALIRYYCRESGVRNLKKHI 790

Query: 243 REIADAALLRLAID 256
            +I   A  ++  D
Sbjct: 791 DKIYRKAAFKIVTD 804


>gi|296082901|emb|CBI22202.3| unnamed protein product [Vitis vinifera]
          Length = 657

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 61/274 (22%), Positives = 98/274 (35%), Gaps = 23/274 (8%)

Query: 26  TLEEFTG-----Q--VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G     Q   E    LK   + A   A     VL VGPPG GKT LA+ +A E 
Sbjct: 212 TFNDVAGVDEAKQDFQEIVEFLKTPEKFAAVGARIPKGVLLVGPPGTGKTLLAKAIAGEA 271

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG           A  +  L    ++    ++FIDEI  +       +    +
Sbjct: 272 GVPFFSLSGSEFIEMFVGIGASRVRDLFNKAKENSPCLVFIDEIDAVGRQRGTGIGGGND 331

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E           S   +IAAT R  +L + L    RF   + +   +I 
Sbjct: 332 EREQTLNQLLTEMDGFSGN----SGVIVIAATNRPEILDSALLRPGRFDRQVTVGLPDIR 387

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++  +    L      +         +      L+      A       IT +  
Sbjct: 388 GREEILKVHSNNKKLDKDVSLSIIAMRTPGFSGADLANLMNEAAILAGRRGKDKITLKEI 447

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV 280
           D ++ R+     G    D +   ++A +  G  V
Sbjct: 448 DDSIDRIVAGMEGTKMTDGKSKILVAYHEIGHAV 481


>gi|148239452|ref|YP_001224839.1| cell division protein FtsH [Synechococcus sp. WH 7803]
 gi|147847991|emb|CAK23542.1| Cell division protein FtsH [Synechococcus sp. WH 7803]
          Length = 620

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 55/247 (22%), Positives = 91/247 (36%), Gaps = 19/247 (7%)

Query: 26  TLEEFTGQVEACSNLK---VFIEA----AKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
             ++  G  EA   L+    F++      K  A     VL VGPPG GKT LA+ +A E 
Sbjct: 156 RFDDVAGIAEAKDELQEVVTFLKQPETFIKLGARIPRGVLLVGPPGTGKTLLAKAIAGEA 215

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S +            A  +  L    +++   ++FIDEI  +       +    +
Sbjct: 216 GVPFFSLAASEFVELFVGVGASRVRDLFRKAKEKSPCIVFIDEIDAVGRQRGAGIGGGND 275

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
           + +  L   +  +      + S   L+AAT R  +L   L    RF   I +   + +  
Sbjct: 276 EREQTL--NQLLTEMDGFADNSGVILLAATNRADVLDTALMRPGRFDRRIAVGLPDRKGR 333

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           + I+   A+   LA     A         +      LL           + T+     + 
Sbjct: 334 EAILSVHARTRPLAEEVSLADWARRTPGFSGADLANLLNEAAILTARHQSTTLGNRELEM 393

Query: 249 ALLRLAI 255
           AL R+ +
Sbjct: 394 ALERITM 400


>gi|110289141|gb|AAP53974.2| Cell division cycle protein 48, putative, expressed [Oryza sativa
           Japonica Group]
 gi|222612898|gb|EEE51030.1| hypothetical protein OsJ_31677 [Oryza sativa Japonica Group]
          Length = 808

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/173 (25%), Positives = 64/173 (36%), Gaps = 31/173 (17%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------------VLFVGPPGLGKTTLA 71
            L+E  G  +     K   +  +     L H              +L  GPPG GKT +A
Sbjct: 203 RLDE-VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIA 261

Query: 72  QVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEE 123
           + VA E G  F   +GP I          +L       E     ++FIDEI  ++   E+
Sbjct: 262 RAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREK 321

Query: 124 ILYPAMEDFQLDLMV-GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
                       L+   +G  ARS  I      ++ AT R   +   L+ RFG
Sbjct: 322 TNGEVERRIVSQLLTLMDGLKARSHVI------VMGATNRPNSIDPALR-RFG 367



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/255 (16%), Positives = 82/255 (32%), Gaps = 25/255 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVARE 77
           + E+  G       L+  ++      E            VLF GPPG GKT LA+ +A E
Sbjct: 481 SWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANE 540

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
              NF S  GP +          ++  +          VLF DE+  ++      +  A 
Sbjct: 541 CQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDA- 599

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                D ++ +  +            +I AT R  ++   L    R    I +   + + 
Sbjct: 600 -GGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEQS 658

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH-----AKTIT 242
              I +   + + +A   +           +      + +R   +A   +      +   
Sbjct: 659 RLQIFKACLRKSPVAKDVDLNALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERR 718

Query: 243 REIADAALLRLAIDK 257
            +    A+    +D 
Sbjct: 719 SKENPEAMEEDEVDD 733


>gi|112983322|ref|NP_001037003.1| transitional endoplasmic reticulum ATPase TER94 [Bombyx mori]
 gi|83423461|dbj|BAE54254.1| transitional endoplasmic reticulum ATPase TER94 [Bombyx mori]
 gi|95102992|gb|ABF51437.1| transitional endoplasmic reticulum ATPase TER94 [Bombyx mori]
          Length = 805

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 88/257 (34%), Gaps = 29/257 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVARE 77
           T  +  G       L+  ++      +            VLF GPPG GKT LA+ +A E
Sbjct: 473 TWTDIGGLEGVKRELQELVQYPVEHPDKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANE 532

Query: 78  LGVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
              NF S  GP +         A   D+     +     VLF DE+  ++      +  A
Sbjct: 533 CQANFISVKGPELLTMWFGESEANVRDIFDKARSASP-CVLFFDELDSIAKSRGGSVSDA 591

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
                 D ++ +  +            +I AT R  ++   +    R    I +   + +
Sbjct: 592 --GGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEK 649

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF-------AEVAHAK 239
             + I++   + + +A   + +    +    +      + +R           AE+   +
Sbjct: 650 SREAILRANLRKSPIAKDVDLSYIAKVTQGFSGADLTEICQRACKLAIRQAIEAEIHRER 709

Query: 240 TITREIADAALLRLAID 256
           +  ++ A A +     D
Sbjct: 710 SRQQQAAAAVMDMDEED 726



 Score = 53.5 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 51/263 (19%), Positives = 88/263 (33%), Gaps = 38/263 (14%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARA--------EALDHVLFVGPPGLGKTTLAQVVARELG 79
           ++  G  +  + +K  +E              +    +L  GPPG GKT +A+ VA E G
Sbjct: 202 DDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVANETG 261

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMED 131
             F   +GP I          +L       +     ++FIDE+  ++   E+        
Sbjct: 262 AFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHGEVERR 321

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
               L+       +S     S   ++AAT R   +   L+   RF   I +   +     
Sbjct: 322 IVSQLLTLMDGMKKS-----SHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRL 376

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            I++   K   L   D    +IA  S G        L               +       
Sbjct: 377 EILRIHTKNMKL-GDDVDLEQIAAESHGHVGADLASL--------------CSEAALQQI 421

Query: 250 LLRLAIDKMGFDQLDLRYLTMIA 272
             ++ +  +  DQ+D   L  +A
Sbjct: 422 REKMDLIDLEDDQIDAEVLNSLA 444


>gi|317120983|ref|YP_004100986.1| membrane protease FtsH catalytic subunit [Thermaerobacter
           marianensis DSM 12885]
 gi|315590963|gb|ADU50259.1| membrane protease FtsH catalytic subunit [Thermaerobacter
           marianensis DSM 12885]
          Length = 615

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 58/252 (23%), Positives = 87/252 (34%), Gaps = 41/252 (16%)

Query: 26  TLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T E+  G  E    LK  +          +  A     VL  GPPG GKT +A+ VA E 
Sbjct: 157 TFEDVAGYEEVKEELKEIVDYLKNPRRYIELGARIPKGVLLYGPPGTGKTHMARAVAGEA 216

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAME 130
           GV F   SG       V   A  +  L    +     ++FIDEI  +            +
Sbjct: 217 GVPFYYISGSDFVEMFVGVGASRVRDLFEQAKRNAPAIVFIDEIDAVGRQRGAGYGGGHD 276

Query: 131 DFQLDL------MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ-----DRFGIPIR 179
           + +  L      M G G +   +        ++AAT R  +L   L      DR  +  R
Sbjct: 277 EREQTLNQLLVEMDGFGTNEGII--------VMAATNRPDVLDPALLRPGRFDRQIVIDR 328

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
            +    E +  +  R          D         +R TP   G  L  + + A +  A+
Sbjct: 329 PDLVAREAILKVHTRS--KPLAPDVDLGLL-----ARRTPGFTGADLENLVNEAALLAAR 381

Query: 240 TITREIADAALL 251
              ++I    L 
Sbjct: 382 RRKKQIDMQDLE 393


>gi|242085200|ref|XP_002443025.1| hypothetical protein SORBIDRAFT_08g006520 [Sorghum bicolor]
 gi|241943718|gb|EES16863.1| hypothetical protein SORBIDRAFT_08g006520 [Sorghum bicolor]
          Length = 1074

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 51/249 (20%), Positives = 82/249 (32%), Gaps = 34/249 (13%)

Query: 2   MDREGLLSRNVSQEDA--DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLF 59
           MD   + S ++++ D        RPR   E  GQ  A  +L   I    AR       LF
Sbjct: 394 MDL-SVRSADLAESDPRSLSQKYRPRAFPEIVGQNIAAQSLSNAI----ARERIAPAYLF 448

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGP---------VIAKAGDLAALLTNLEDRDVLF 110
            GP G GKT+ A++ +  L       + P           +  G     +     + +  
Sbjct: 449 QGPRGTGKTSTARIFSAALNCLTTGDNKPCGVCNQCTDFFSGKGTNLKEVDASNRKSISI 508

Query: 111 IDEIHRLSIIVEEILYP-AMEDFQLDLMVGEGPSARS---------VKINLSRFTLIAAT 160
           I         + E L P A        +V E     S         +     R   I  T
Sbjct: 509 I-------KHLLENLPPSAPLSRYKVFVVDECHMTPSKLWSAFMKFLDEPFPRVVFIFIT 561

Query: 161 TRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPR 220
                L   +  R    +     +I+ +   +++      L V   A   IA+ S G+ R
Sbjct: 562 IDPDNLPRAVVSRCQKYVFSKIKDIDTVCR-LRKICVKENLDVELAALDLIALNSDGSLR 620

Query: 221 IAGRLLRRV 229
            A  +L ++
Sbjct: 621 DAETMLDQL 629


>gi|258404834|ref|YP_003197576.1| ATP-dependent metalloprotease FtsH [Desulfohalobium retbaense DSM
           5692]
 gi|257797061|gb|ACV67998.1| ATP-dependent metalloprotease FtsH [Desulfohalobium retbaense DSM
           5692]
          Length = 618

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 56/260 (21%), Positives = 96/260 (36%), Gaps = 25/260 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           TL +  G   A + ++  I+  K          +     L +GPPG GKT LA+ VA E 
Sbjct: 175 TLGDVAGAEGAKTEIQEIIDFLKNPDQIHALGGKTPKGCLLIGPPGTGKTLLARAVAGEA 234

Query: 79  GVNFRSTSGPVIA------KAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S +G           A  +  L    +     ++FIDE+  +       L    +
Sbjct: 235 EVPFYSITGSDFMEMFVGVGASRVRNLFQEAKKESPAIIFIDELDSIGRQRGAGLGGGHD 294

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E       +       +I+AT R  +L   L    RF   I ++  + +
Sbjct: 295 EREQTLNQLLSEMDGFEPTE----NVVVISATNRPDILDPALMRPGRFDRRITVDLPKTK 350

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           D + I++  A    LA   + A         +      +L      A    A TI +E  
Sbjct: 351 DREEILEVYAHSKPLADDVDMADLARGTPGFSGADLENMLNEAALLAARKGADTIHKEDI 410

Query: 247 DAALLRL--AIDKMGFDQLD 264
           + A  ++   + + G    D
Sbjct: 411 EEARDKILLGLQRKGLALTD 430


>gi|224111036|ref|XP_002332995.1| predicted protein [Populus trichocarpa]
 gi|222834384|gb|EEE72861.1| predicted protein [Populus trichocarpa]
          Length = 472

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 55/274 (20%), Positives = 95/274 (34%), Gaps = 23/274 (8%)

Query: 26  TLEEFTG-----QV--EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G     Q   E    LK         A     VL VGPPG GKT LA+ +A E 
Sbjct: 8   TFDDVAGVDEAKQDFMEVVEFLKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEA 67

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG           A  +  L    ++    ++F+DEI  +       +    +
Sbjct: 68  GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENVPCIVFVDEIDAVGRQRGTGIGGGND 127

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E               ++AAT R  +L + L    RF   + ++  ++ 
Sbjct: 128 EREQTLNQLLTEMDGFEGNTG----IIVVAATNRADILDSALLRPGRFDRQVTVDVPDVR 183

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
               I++  A                     +      LL      A       I+ +  
Sbjct: 184 GRTEILKVHASNKKFDADVSLDVVAMRTPGFSGADLANLLNEAAILAGRRGKTAISSKEI 243

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV 280
           D ++ R+     G    D +  +++A +  G  +
Sbjct: 244 DDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAI 277


>gi|163816595|ref|ZP_02207959.1| hypothetical protein COPEUT_02786 [Coprococcus eutactus ATCC 27759]
 gi|158448295|gb|EDP25290.1| hypothetical protein COPEUT_02786 [Coprococcus eutactus ATCC 27759]
          Length = 629

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 90/244 (36%), Gaps = 22/244 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE-------ALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G+ EA  NL   +E      +           +L VGPPG GKT LA+ VA E 
Sbjct: 189 KFTDVAGEDEAKENLAEIVEYLHNPGKYKEIGASMPKGILLVGPPGTGKTMLAKAVAGEA 248

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG           A  +  L    +++   ++FIDEI  +    +  +    E
Sbjct: 249 NVPFFSMSGSEFVEMFVGMGASKVRDLFQQAKEKAPCIVFIDEIDAIGKKRDGQIGGNDE 308

Query: 131 -DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            +  L+ ++ E               ++AAT R   L   L    RF   + +   +++ 
Sbjct: 309 REQTLNQLLTEMDGFEGNNG----VIILAATNRPDSLDPALLRPGRFDRRVPVELPDLKG 364

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            + I++  AK   +    +      M S  +      ++      A  A    +T+   +
Sbjct: 365 REDILKVHAKKVKIGDNVDFNKIARMASGASGAELANIVNEAALRAVRAGRGFVTQADME 424

Query: 248 AALL 251
            ++ 
Sbjct: 425 ESIE 428


>gi|159476808|ref|XP_001696503.1| flagellar associated protein [Chlamydomonas reinhardtii]
 gi|158282728|gb|EDP08480.1| flagellar associated protein [Chlamydomonas reinhardtii]
          Length = 817

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/175 (24%), Positives = 64/175 (36%), Gaps = 35/175 (20%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------------VLFVGPPGLGKTTLA 71
            L+E  G  +     K   +  +     L H              +L  GPPG GKT +A
Sbjct: 204 KLDE-VGYDDIGGVRKQLAQIRELVELPLRHPQLFKTIGVKPPKGILLYGPPGSGKTLIA 262

Query: 72  QVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIV-- 121
           + VA E G  F   +GP I          +L  +    E     ++FIDE+  ++     
Sbjct: 263 RAVANETGAFFVVVNGPEIMSKLAGESESNLRKVFQEAEKNAPSIIFIDEVDSIAPKREK 322

Query: 122 -EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
            +  +   +    L LM G    A  + I        AAT R   +   L+ RFG
Sbjct: 323 TQGEVERRIVSQLLTLMDGLKSRAHVIVI--------AATNRPNSIDPALR-RFG 368



 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 57/162 (35%), Gaps = 18/162 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVARE 77
           + +   G       L+  I+      E            VLF GPPG GKT LA+ +A E
Sbjct: 482 SWDAIGGLENVKRELQELIQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANE 541

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
              NF S  GP +          ++  +          VLF DE+  +++        A 
Sbjct: 542 CQANFISVKGPELLTMWFGESEANVREIFDKARGSAPCVLFFDELDSIAVQRGSSAGDA- 600

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
                D ++ +  +      +     +I AT R  ++   L 
Sbjct: 601 -GGAADRVLNQLLTEMDGMNSKKTVFIIGATNRPDIIDPALL 641


>gi|118411141|ref|YP_874535.1| cell division protein FtsH-like protein [Thalassiosira pseudonana]
 gi|224015722|ref|XP_002297509.1| plastid division protein [Thalassiosira pseudonana CCMP1335]
 gi|116739888|gb|ABK20758.1| cell division protein FtsH-like protein [Thalassiosira pseudonana]
 gi|220967773|gb|EED86149.1| plastid division protein [Thalassiosira pseudonana CCMP1335]
          Length = 642

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 60/280 (21%), Positives = 101/280 (36%), Gaps = 26/280 (9%)

Query: 23  RPRT---LEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQ 72
           RP T     +  G  EA +  +  +   K         A+    +L VGPPG GKT LA+
Sbjct: 175 RPDTGVNFNDIAGIDEAKAEFEEIVSFLKEPEKYTVVGAKIPKGILLVGPPGTGKTLLAK 234

Query: 73  VVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEI 124
            +A E  V F S +G           A  +  L     +    ++FIDEI  +       
Sbjct: 235 AIANEADVPFFSVAGSEFVEMFIGIGAARVRDLFQKASENAPCIVFIDEIDAVGRERGAG 294

Query: 125 LYPAMEDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRL 180
           +    ++ +  L  ++ E    +  K       ++ AT RV +L   L    RF   + +
Sbjct: 295 VGGGNDEREQTLNQLLTEMDGFKENKG----VIVVGATNRVDILDAALLRPGRFDRQVTV 350

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           N  +     +I++  AK   L                +      LL      A     +T
Sbjct: 351 NLPDRLGRISILKVHAKNKPLGEDVSLVQLANRTPGFSGADLANLLNEAAILATRYKKET 410

Query: 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV 280
           I++   + A+ R+     G    D +   +IA +  G  +
Sbjct: 411 ISKNEVNQAIDRIIGGIAGTPMEDSKNKKLIAYHEVGHAI 450


>gi|71663369|ref|XP_818678.1| transitional endoplasmic reticulum ATPase [Trypanosoma cruzi strain
           CL Brener]
 gi|70883943|gb|EAN96827.1| transitional endoplasmic reticulum ATPase, putative [Trypanosoma
           cruzi]
          Length = 778

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 50/259 (19%), Positives = 88/259 (33%), Gaps = 34/259 (13%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------------VLFVGPPGLGKTTLA 71
            L++  G  +     K  ++  +     + H              +L  GPPG GKT +A
Sbjct: 185 RLDD-VGYDDIGGCRKQLVQIREMVELPIRHPELFKNIGIKPPRGILLYGPPGSGKTLIA 243

Query: 72  QVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEE 123
           + VA E G  F   +GP I         G+L       E     ++FIDEI  ++   E+
Sbjct: 244 RAVANETGAFFFLINGPEIMSKMAGESEGNLRKAFEEAEKNAPSIVFIDEIDSIAPKREK 303

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLN 181
                 +      +V +  +        S+  ++AAT R   +   L+   RF   I + 
Sbjct: 304 -----AQGEVEKRIVSQLLTLMDGLKTRSQVIVMAATNRPNSIDPALRRFGRFDREIDIG 358

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA-EVAHAKT 240
             +      I++   K   L   D       +       +   L +   + A +    K 
Sbjct: 359 VPDDIGRLEILRIHTKNMKL---DPGVDVEKIAKDSHGYVGADLAQLCTEAAMQCVREKM 415

Query: 241 ITREIADAALLRLAIDKMG 259
              +  D  +    +D M 
Sbjct: 416 SVIDWDDDTIDAEVLDSMA 434



 Score = 52.4 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 54/264 (20%), Positives = 94/264 (35%), Gaps = 36/264 (13%)

Query: 2   MDREGLLSRNVSQEDADISL-------LR------PR-TLEEFTGQVEACSNLKVFIEAA 47
           +D E L S  V+ E    +L       LR      P  T  +  G ++    L+  ++  
Sbjct: 425 IDAEVLDSMAVTNEHFRDALTKTNPSALRETHVETPHVTWSDVGGLLDVKRELQELVQYP 484

Query: 48  --------KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLA 97
                   K        VLF GPPG GKT LA+ +A E   NF S  GP +     G+  
Sbjct: 485 VEFPWKFEKYGMSPPKGVLFYGPPGCGKTLLAKAIATECQANFISIKGPELLTMWFGESE 544

Query: 98  ALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINL 151
           A + ++ D+       VLF DE+  ++           +    D ++ +  +      + 
Sbjct: 545 ANVRDVFDKARAAAPCVLFFDELDSVARAR----GSHGDGGASDRVINQILTEMDGMNSK 600

Query: 152 SRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAAC 209
               +I AT R  +L   +    R    I +   +      I++   + + L+   +   
Sbjct: 601 KNVFIIGATNRPDVLDPAIMRPGRLDQLIYIPLPDKASRVAIIKANFRKSPLSADVDVDK 660

Query: 210 EIAMRSRGTPRIAGRLLRRVRDFA 233
             A     +      + +R    A
Sbjct: 661 IAAATHGFSGADLAGICQRACKMA 684


>gi|312093422|ref|XP_003147677.1| VCP protein [Loa loa]
 gi|307757158|gb|EFO16392.1| VCP protein [Loa loa]
          Length = 622

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 50/271 (18%), Positives = 85/271 (31%), Gaps = 34/271 (12%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
           T ++  G       L+  ++      +            VLF GPPG GKT LA+ +A E
Sbjct: 278 TWDDIGGLQNVKRELQELVQYPVEHPDKYLKFGMQPSRGVLFYGPPGCGKTLLAKAIAHE 337

Query: 78  LGVNFRSTSGPVI---------AKAGDL------------AALLTNLEDRDVLFIDEIHR 116
              NF S  GP +         A   D+            A+         VLF DE+  
Sbjct: 338 CQANFISIKGPELLTMWFGESEANVRDVFDKASFLFDIGCASHFARAAAPCVLFFDELDS 397

Query: 117 LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RF 174
           ++      +  A      D ++ +  +      N     +I AT R  ++ + +    R 
Sbjct: 398 VAKARGGNIGDA--GGAADRVINQILTEMDGMSNKKNVFIIGATNRPDIIDSAILRPGRL 455

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA- 233
              I +   +      I +   + T +A   +           +      + +R    A 
Sbjct: 456 DQLIYIPLPDEASRLQIFKANLRKTPIATDVDLTYLAKTTVGFSGADLTEICQRACKLAI 515

Query: 234 EVAHAKTITREIADAALLRLAIDKMGFDQLD 264
             +  K I  E           + M  D  D
Sbjct: 516 RESIEKEIRHEKEKQERRARGEELMDDDAYD 546



 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 39/167 (23%), Positives = 59/167 (35%), Gaps = 28/167 (16%)

Query: 31  TGQVEACSNLKVFIEAAKARAEALDH--------------VLFVGPPGLGKTTLAQVVAR 76
            G  +     K   +  +     L H              +L  GPPG GKT +A+ VA 
Sbjct: 4   VGYDDIGGVRKQLAQIKEMVELPLRHPQLFKAIGIKPPRGILLYGPPGTGKTLIARAVAN 63

Query: 77  ELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPA 128
           E G  F   +GP I          +L       E     +LFIDE+  ++   E+     
Sbjct: 64  ETGAFFFLLNGPEIMSKLAGESESNLRKAFEECEKNSPAILFIDELDAIAPKREK----- 118

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
                   +V +  +        S   ++AAT R   +   L+ RFG
Sbjct: 119 THGEVERRIVSQLLTLMDGLKQRSHVVVMAATNRPNSIDPALR-RFG 164


>gi|301777898|ref|XP_002924373.1| PREDICTED: ATPase family AAA domain-containing protein 2-like
           [Ailuropoda melanoleuca]
          Length = 1385

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/186 (22%), Positives = 71/186 (38%), Gaps = 26/186 (13%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTS------GPVIAK-AGDLAALL 100
           K R +     LF GPPG GKT +A+ +A E     +  +         ++K  G+    L
Sbjct: 446 KFRIQPPRGCLFYGPPGTGKTLVARALANECSQGDKRVAFFMRKGADCLSKWVGESERQL 505

Query: 101 TNLEDR------DVLFIDEIHRLSII---VEEILYPAMEDFQLDLMVGEGPSARSVKINL 151
             L D+       ++F DEI  L+ +    ++ ++ ++    L LM G       V I  
Sbjct: 506 RLLFDQAYQMRPSIIFFDEIDGLAPVRSSRQDQIHSSIVSTLLALMDGLDSRGEIVVI-- 563

Query: 152 SRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAAC 209
                  AT R+  +   L+   RF      +  + +  K I++   +       D    
Sbjct: 564 ------GATNRLDSIDPALRRPGRFDREFLFSLPDKDARKEILKIHTRDWNPKPLDIFLE 617

Query: 210 EIAMRS 215
           E+A   
Sbjct: 618 ELAENC 623


>gi|296449468|ref|ZP_06891248.1| cell division protein FtsH [Clostridium difficile NAP08]
 gi|296878209|ref|ZP_06902221.1| cell division protein FtsH [Clostridium difficile NAP07]
 gi|296261707|gb|EFH08522.1| cell division protein FtsH [Clostridium difficile NAP08]
 gi|296430778|gb|EFH16613.1| cell division protein FtsH [Clostridium difficile NAP07]
          Length = 467

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 59/264 (22%), Positives = 90/264 (34%), Gaps = 27/264 (10%)

Query: 8   LSRNVSQEDADISLLRPRT-LEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLF 59
           + R+   +D+  +   P+T   +  G  E    L   ++  K+        A+    VLF
Sbjct: 23  MERDNQTDDSLSTK--PKTTFRDVAGLDEVKEELFEIVDFMKSPQKYQKMGAKIPKGVLF 80

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFI 111
            GPPG GKT LA  VA E   +F + +G           A  +  L          ++FI
Sbjct: 81  YGPPGTGKTLLASAVAGETNSSFFNVTGSEFVEKYVGVGAKRVRTLFEKARKEAPSIIFI 140

Query: 112 DEIHRLSIIVEEILYPAME-DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           DEI  +       L    E D  L+ ++ E           S   +I AT R+ LL   L
Sbjct: 141 DEIDAVGAKR--HLESNNEKDQTLNQLLVEMDGFNKD----SNVLIIGATNRLDLLDEAL 194

Query: 171 QD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
               RF   I +          I++       +  +                    +   
Sbjct: 195 LRPGRFDRHIHIGAPNYHTRFEILKVHTDDKPIDKSVNLELLAKKTHGFNGAHLSNIANE 254

Query: 229 VRDFAEVAHAKTITREIADAALLR 252
              FA    ++ IT E  D AL R
Sbjct: 255 AAIFAVRDDSECITSEHFDKALER 278


>gi|218184617|gb|EEC67044.1| hypothetical protein OsI_33786 [Oryza sativa Indica Group]
          Length = 755

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/173 (25%), Positives = 64/173 (36%), Gaps = 31/173 (17%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------------VLFVGPPGLGKTTLA 71
            L+E  G  +     K   +  +     L H              +L  GPPG GKT +A
Sbjct: 203 RLDE-VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIA 261

Query: 72  QVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEE 123
           + VA E G  F   +GP I          +L       E     ++FIDEI  ++   E+
Sbjct: 262 RAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREK 321

Query: 124 ILYPAMEDFQLDLMV-GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
                       L+   +G  ARS  I      ++ AT R   +   L+ RFG
Sbjct: 322 TNGEVERRIVSQLLTLMDGLKARSHVI------VMGATNRPNSIDPALR-RFG 367



 Score = 43.1 bits (100), Expect = 0.064,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 8/73 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVARE 77
           + E+  G       L+  ++      E            VLF GPPG GKT LA+ +A E
Sbjct: 481 SWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANE 540

Query: 78  LGVNFRSTSGPVI 90
              NF S  GP +
Sbjct: 541 CQANFISVKGPEL 553


>gi|190344557|gb|EDK36248.2| hypothetical protein PGUG_00346 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 1182

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 74/190 (38%), Gaps = 33/190 (17%)

Query: 32  GQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           G  +    +  FI   K   +    +L   GPPG GKT++A+ +A  L   +   +   I
Sbjct: 618 GLKDVKDRILEFISIGKVSGKVDGKILCLAGPPGTGKTSIARSIAEALDRKYVRIAMGGI 677

Query: 91  AKAGDLA------------ALLTNLED----RDVLFIDEIHRLSIIV--------EEILY 126
               ++              ++  L+       ++ IDEI +L +           EIL 
Sbjct: 678 QDVHEVKGHRRTYVGSIPGRIIFALKQAKTSNPLMLIDEIDKLDLSRGGGAASAFLEILD 737

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           P   +  +D  +        VK++LS+   +     +G +  PL+DR  I I ++ Y   
Sbjct: 738 PEQNNSFVDNYI-------DVKVDLSKVLFVCTANYLGNIPAPLRDRMEI-IDVSGYTNN 789

Query: 187 DLKTIVQRGA 196
           +   I +R  
Sbjct: 790 EKIEIAKRHL 799


>gi|154345666|ref|XP_001568770.1| Transitional endoplasmic reticulum ATPase [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134066112|emb|CAM43901.1| putative transitional endoplasmic reticulum ATPase [Leishmania
           braziliensis MHOM/BR/75/M2904]
          Length = 785

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 54/260 (20%), Positives = 97/260 (37%), Gaps = 40/260 (15%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHV--------LFVGPPGLGKTTLAQVVARELG 79
           ++  G  +  + ++  +E      E   ++        L  GPPG GKT +A+ VA E G
Sbjct: 194 DDIGGCRKQLNQIREMVELPIRHPELFKNIGIKPPRGILLYGPPGSGKTLIARAVANETG 253

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAMED 131
             F   +GP I          +L       E     ++FIDEI  ++   E+      + 
Sbjct: 254 AFFFLINGPEIMSKMAGESESNLRKAFEEAERNAPAIIFIDEIDSIAPKREK-----AQG 308

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
                +V +  +      + S+  ++AAT R   +   L+   RF   + +   +     
Sbjct: 309 EVEKRIVSQLLTLMDGMKSRSQVIVMAATNRQNTIDPALRRFGRFDRELDIGVPDEIGRL 368

Query: 190 TIVQRGAKLTGLAVT--------DEAACEIAMRSRGTPRIAGRLLRR---VRDF------ 232
            I++   K   LA          D      A  ++     A + +R    V D+      
Sbjct: 369 EIIRIHTKNMKLAEDIDLEKVAKDSHGFVGADLAQLCTEAAMQCIREKLSVIDWEDDTID 428

Query: 233 AEVAHAKTITREIADAALLR 252
           AEV +A  +T+E    A+ +
Sbjct: 429 AEVMNAMCVTQEHFREAMAK 448



 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 80/224 (35%), Gaps = 22/224 (9%)

Query: 28  EEFTGQVEACSNLKVFIEAA--------KARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           E+  G ++    L+  ++          K        VLF GPPG GKT LA+ +A E  
Sbjct: 467 EDVGGLLDVKRELQELVQYPVEYPWKFEKYGMSPPKGVLFYGPPGCGKTLLAKAIATECQ 526

Query: 80  VNFRSTSGPVIAKA--GDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAMED 131
            NF S  GP +     G+  A + ++ D+       VLF DE+  ++           + 
Sbjct: 527 ANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCVLFFDELDSVARSR----GGHGDG 582

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
              D ++ +  +            +I AT R  +L   +    R    I +   +     
Sbjct: 583 GASDRVINQILTEMDGMNVKKNVFIIGATNRPDVLDPAIMRPGRLDQLIYIPLPDKASRV 642

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
            I++   + + LA   +     A     +      + +R    A
Sbjct: 643 AIIKASFRKSPLASDVDVDQIAAATHGFSGADLSGICQRACKMA 686


>gi|126540549|emb|CAM46306.1| spermatogenesis associated 5 [Mus musculus]
          Length = 834

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 84/243 (34%), Gaps = 34/243 (13%)

Query: 29  EFTGQVEACSNLKVFIEAAK---ARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
           +  G     S LK   E  +    + E            +L  GPPG GKT +A+ VA E
Sbjct: 352 DMIG--GLNSQLKAIREIIELPLKQPELFKSYGIPAPRGLLLYGPPGTGKTMIARAVANE 409

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIV---EEILY 126
           +G      +GP I           L  +      R   ++FIDE+  L       +  + 
Sbjct: 410 VGAYVSVINGPEIISKFYGETEARLRQIFAEATLRHPSIIFIDELDALCPKREGAQSEVE 469

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
             +    L LM G G           R  ++ AT R   L   L+   RF   I +    
Sbjct: 470 KRVVASLLTLMDGIGSEGSEG-----RVLVLGATNRPQALDAALRRPGRFDKEIEIGIPN 524

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            +D   I+Q   KL           E+   +       G  L+ + + A +   + + R+
Sbjct: 525 AQDRLDILQ---KLLRRVPHLLTKAELLRLANNAHGYVGADLKALCNEAGLHALRRVLRK 581

Query: 245 IAD 247
             +
Sbjct: 582 QPN 584



 Score = 52.0 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 66/186 (35%), Gaps = 21/186 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
           +  +  G       LK  +E      +            VL  GPPG  KT +A+ +A E
Sbjct: 624 SWSDIGGLENIKLKLKQAVEWPLKHPKSFNRMGIQPPKGVLLYGPPGCSKTMIAKALANE 683

Query: 78  LGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAM 129
            G+NF +  GP +     G+    +  +  +       ++F DE+  L++          
Sbjct: 684 SGLNFLAIKGPELMNKYVGESERAVREIFRKARAVAPSIIFFDELDALAVERGSSSGAGN 743

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                D ++ +  +       L   T++AAT R   +   L    R    I +   +   
Sbjct: 744 ---VADRVLAQLLTEMDGIEQLKNVTVLAATNRPDRIDKALMRPGRIDRIIYVPLPDAAT 800

Query: 188 LKTIVQ 193
            + I+ 
Sbjct: 801 RREILN 806


>gi|91774863|ref|YP_544619.1| ATPase AAA-2 [Methylobacillus flagellatus KT]
 gi|91708850|gb|ABE48778.1| ATPase AAA-2 [Methylobacillus flagellatus KT]
          Length = 763

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 54/270 (20%), Positives = 88/270 (32%), Gaps = 41/270 (15%)

Query: 30  FTGQVEACSNLKVFIEAAKAR----AEALDHVLFVGPPGLGKTTLAQVVARELGVNFRST 85
             GQ +A   L   I+ A++      + +   LF GP G+GKT +A+ +A  LGV     
Sbjct: 460 VFGQDKAIEALSAAIKMARSGLGSPNKPIGSFLFSGPTGVGKTEVARQLAYTLGVELIRF 519

Query: 86  SG-------PVIAKAG--------DLAALLTNLEDRD---VLFIDEIHRLSIIVEEILYP 127
                     V    G        +   LLT   ++    VL +DEI +    +  IL  
Sbjct: 520 DMSEYMERHAVSRLIGAPPGYVGFEQGGLLTEAINKTPYCVLLLDEIEKAHPDIFNILLQ 579

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSR---FTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
            M+   L    G     R+V I ++       I+ T+    L +   D  G       + 
Sbjct: 580 VMDHGTLTDNNGRKADFRNVTIIMTTNAGAEAISKTSIGFTLGSNSGDEMGDI--KRLFS 637

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            E    +             D       +      R+  + L ++ D       +    +
Sbjct: 638 PEFRNRL-------------DAIVSFAPLSEEIIVRVVDKFLMQLEDQLHEKKVEATFSD 684

Query: 245 IADAALLRLAIDK-MGFDQLDLRYLTMIAR 273
              A L +   D  MG   +       I R
Sbjct: 685 ALKAYLGKKGFDPLMGARPMSRLIQDTIRR 714


>gi|120597893|ref|YP_962467.1| ATP-dependent metalloprotease FtsH [Shewanella sp. W3-18-1]
 gi|120557986|gb|ABM23913.1| membrane protease FtsH catalytic subunit [Shewanella sp. W3-18-1]
          Length = 657

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 93/250 (37%), Gaps = 23/250 (9%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAA-------KARAEALDHVLFVGPPGLGKTTLAQVVARE 77
            T  +  G  EA   +K  ++         K        VL VGPPG GKT LA+ +A E
Sbjct: 159 TTFADVAGCDEAKEEVKELVDYLRDPTKFQKLGGRIPTGVLMVGPPGTGKTLLAKAIAGE 218

Query: 78  LGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
             V F + SG       V   A  +  +    +     ++FIDEI  +       L    
Sbjct: 219 SKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKSAPCIIFIDEIDAVGRQRGAGLGGGH 278

Query: 130 EDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           ++ +  L  M+ E       +       +IAAT R  +L + L    RF   + +   ++
Sbjct: 279 DEREQTLNQMLVEMDGFEGNEG----VIVIAATNRPDVLDSALLRPGRFDRQVVVGLPDV 334

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
              + I++   +   L+   +A+         +      L+     FA   + + +  E 
Sbjct: 335 RGREQILKVHMRKVPLSEDVKASVIARGTPGFSGADLANLVNEAALFAARGNRRVVGMEE 394

Query: 246 ADAALLRLAI 255
            + A  ++ +
Sbjct: 395 FERAKDKIMM 404


>gi|189499967|ref|YP_001959437.1| DNA polymerase III, subunits gamma and tau [Chlorobium
           phaeobacteroides BS1]
 gi|189495408|gb|ACE03956.1| DNA polymerase III, subunits gamma and tau [Chlorobium
           phaeobacteroides BS1]
          Length = 398

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 55/284 (19%), Positives = 87/284 (30%), Gaps = 61/284 (21%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+   + T Q          I+ +          +F G  G+GKTT A+V A+ +
Sbjct: 7   ARKYRPKKFADITAQEHIT----RTIQNSLRLGRVGHGYIFSGLRGVGKTTAARVFAKAV 62

Query: 79  GV--------------------------------NFRSTSGPVIAKAGDLAALLTNLEDR 106
                                             N             D+  L  N+   
Sbjct: 63  NCSRMIDDPVYLKEVTEPCGECESCRDFDEGTSLNISEFDAASNNSVDDIRQLRENVRYG 122

Query: 107 D------VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAAT 160
                  V  IDE+H LS          +E+          P A ++         I AT
Sbjct: 123 PQKGRFRVYIIDEVHMLSTAAFNAFLKTLEE----------PPAHAI--------FIFAT 164

Query: 161 TRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPR 220
           T +  +   +  R           +ED++  +Q   +   L V  E+   I  +++G+ R
Sbjct: 165 TELHKIPATIASRCQ-RFNFKRIPLEDIEKQLQGICEAEDLGVDSESLQLIGRKAQGSMR 223

Query: 221 IAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLD 264
            A  +L +V  FA     +   R    A LL    D   F   D
Sbjct: 224 DAQSILDQVIAFAVEQDDERSIRYEKVAELLNYIDDDHFFAVTD 267


>gi|297848920|ref|XP_002892341.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297338183|gb|EFH68600.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 685

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 55/274 (20%), Positives = 96/274 (35%), Gaps = 23/274 (8%)

Query: 26  TLEEFTG-----QV--EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G     Q   E    LK         A     VL VGPPG GKT LA+ +A E 
Sbjct: 218 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEA 277

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG           A  +  L    ++    ++F+DEI  +       +    +
Sbjct: 278 GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGND 337

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E               ++AAT R  +L + L    RF   + ++  +++
Sbjct: 338 EREQTLNQLLTEMDGFEGNTG----VIVVAATNRADILDSALLRPGRFDRQVSVDVPDVK 393

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
               I++  +                     +      LL      A       I+ +  
Sbjct: 394 GRTDILKVHSGNKKFDNGVSLEVIAMRTPGFSGADLANLLNEAAILAGRRGKTAISSKEI 453

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV 280
           D ++ R+     G    D +  +++A +  G  V
Sbjct: 454 DDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAV 487


>gi|283768582|ref|ZP_06341494.1| ATPase, AAA family [Bulleidia extructa W1219]
 gi|283104974|gb|EFC06346.1| ATPase, AAA family [Bulleidia extructa W1219]
          Length = 650

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 56/283 (19%), Positives = 99/283 (34%), Gaps = 30/283 (10%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLK----VFIEAAKARAEALD--- 55
           D+  ++      E   +S +   +     G  E    ++    +F+   +   + L    
Sbjct: 375 DQTEIVFYEPIHEQEILSQIE-ESFSNIIGLEEVKEKIRSYQALFLAQRRREEQGLPVNP 433

Query: 56  ---HVLFVGPPGLGKTTLAQVVAR--------ELGVNFRSTSGPVIAKAGDLAALLTNL- 103
              H+LF+G PG GKT +A+++ +        + G     T   ++AK     A LT   
Sbjct: 434 ISMHMLFMGNPGTGKTMIARLLGQYLKNIGLLQEGQLIEVTRSDLVAKYVGQTAPLTKSV 493

Query: 104 ---EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAAT 160
                  VLFIDE + L    ++       D  +  M         +     +      T
Sbjct: 494 IQKARGGVLFIDEAYSLYRGEQDSFGLEAIDTIVKSMEDHRGDLVVILAGYEKEMKEFLT 553

Query: 161 TRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMR-SRGTP 219
              G     L  RF        Y  E+L+ I    A   G    +     +    +    
Sbjct: 554 ANSG-----LASRFPNQFHFKDYTPEELEKIAVLEALKQGYHWDETVRKALVQYFASVDT 608

Query: 220 RIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQ 262
              GRL R + + A V  A  + +E A A++ +L ++    D+
Sbjct: 609 NGNGRLARNLVEKAIVNQATRLLKEKA-ASMDQLCLEDFALDK 650


>gi|260833506|ref|XP_002611698.1| hypothetical protein BRAFLDRAFT_117082 [Branchiostoma floridae]
 gi|229297069|gb|EEN67708.1| hypothetical protein BRAFLDRAFT_117082 [Branchiostoma floridae]
          Length = 859

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 80/215 (37%), Gaps = 28/215 (13%)

Query: 15  EDADISLLR------PR-TLEEFTGQVEACSNLKVFIEAAKARAEALDHV--------LF 59
           ++   S +R      P+    +  GQ      L+  +E      EA   +        L 
Sbjct: 573 KEVKPSAMREVMIDVPKVRWSDIGGQAGIKQKLQQAVEWPLKNPEAFQRMGIRPPQGILM 632

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLAALLTNLEDR------DVLFI 111
            GPPG  KT +A+ +A E G+NF +  GP +     G+    +  +  +       ++F 
Sbjct: 633 YGPPGCSKTLIARALATESGLNFIAVKGPELFSKWVGESELAVREVFRKARAAAPSIVFF 692

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DEI  L++           +   D ++ +  +       L   T++AAT R  ++   L 
Sbjct: 693 DEIDALAVSRGS---SGGGNNVADRVLAQLLTEIDGVDKLGDVTVVAATNRPDMIDKALL 749

Query: 172 D--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVT 204
              R    + +   + +  + I++   K   +   
Sbjct: 750 RPGRIDRILYIPLPDADTRRDILKIQFKTMPVTQD 784



 Score = 45.5 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 35/132 (26%), Positives = 58/132 (43%), Gaps = 23/132 (17%)

Query: 44  IEAAKARAEALDH-VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTN 102
           +EA ++   A  + VL  GPPG GKT +A+V+A E+G  F + +GP +            
Sbjct: 365 LEAFRSLGVAPPYGVLLFGPPGTGKTMVARVLAAEIGATFITINGPEVLS---------- 414

Query: 103 LEDRDVLFIDEIHRLSIIV---EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA 159
            +   ++FIDE+  L       +  +   +    L LM G G   + V        ++ A
Sbjct: 415 -KTPSIIFIDELDALCPKRENVQSEMEKRVVATLLTLMDGSGVPGQVV--------VLGA 465

Query: 160 TTRVGLLTNPLQ 171
           T R   +   L+
Sbjct: 466 TNRPDAVDPALR 477


>gi|170688931|ref|ZP_02880133.1| cell division protein FtsH [Bacillus anthracis str. A0465]
 gi|254682308|ref|ZP_05146169.1| cell division protein FtsH [Bacillus anthracis str. CNEVA-9066]
 gi|170667155|gb|EDT17916.1| cell division protein FtsH [Bacillus anthracis str. A0465]
          Length = 633

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 62/248 (25%), Positives = 88/248 (35%), Gaps = 27/248 (10%)

Query: 26  TLEEFTG-----QV--EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G     Q   E    LK   + A+  A     VL VGPPG GKT LA+ VA E 
Sbjct: 160 RFRDVAGADEEKQELVEVVEFLKDPRKFAEVGARIPKGVLLVGPPGTGKTLLARAVAGEA 219

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG       V   A  +  L  N +     ++FIDEI  +       L    +
Sbjct: 220 GVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCIIFIDEIDAVGRQRGAGLGGGHD 279

Query: 131 DFQLD----LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
           + +      L+  +G  A    I      +IAAT R  +L   L    RF   I ++  +
Sbjct: 280 EREQTLNQLLVEMDGFGANEGII------IIAATNRPDILDPALLRPGRFDRQITVDRPD 333

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +   + +++  A+   L                +      LL      A     K I   
Sbjct: 334 VNGREAVLKVHARNKPLDENINLRAIATRTPGFSGADLENLLNEAALVAARQDKKKIDMS 393

Query: 245 IADAALLR 252
             D A  R
Sbjct: 394 DIDEATDR 401


>gi|163738353|ref|ZP_02145768.1| ATP-dependent metalloprotease FtsH [Phaeobacter gallaeciensis
           BS107]
 gi|163742230|ref|ZP_02149618.1| ATP-dependent metalloprotease FtsH [Phaeobacter gallaeciensis 2.10]
 gi|161384560|gb|EDQ08941.1| ATP-dependent metalloprotease FtsH [Phaeobacter gallaeciensis 2.10]
 gi|161388274|gb|EDQ12628.1| ATP-dependent metalloprotease FtsH [Phaeobacter gallaeciensis
           BS107]
          Length = 637

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 54/251 (21%), Positives = 93/251 (37%), Gaps = 27/251 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  EA   L+  +E        ++   +     L VGPPG GKT LA+ +A E 
Sbjct: 152 TFDDVAGIDEAKEELEEIVEFLRNPQKFSRLGGKIPKGALLVGPPGTGKTLLARAIAGEA 211

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F + SG       V   A  +  +    +     ++FIDEI  +            +
Sbjct: 212 GVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKNAPCIVFIDEIDAVGRHRGAGYGGGND 271

Query: 131 DFQLD----LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
           + +      L+  +G  A    I L      AAT R  +L   L    RF   + +   +
Sbjct: 272 EREQTLNQLLVEMDGFEANEGVIIL------AATNRKDVLDPALLRPGRFDRNVTVGNPD 325

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           I+  + I+   A+ T L    +           +      L+      A     + +T E
Sbjct: 326 IKGREKILGVHARKTPLGPDVDLRIIARGTPGFSGADLANLVNEAALMAARVGRRFVTME 385

Query: 245 IADAALLRLAI 255
             ++A  ++ +
Sbjct: 386 DFESAKDKVMM 396


>gi|163745829|ref|ZP_02153188.1| cell division protein FtsH [Oceanibulbus indolifex HEL-45]
 gi|161380574|gb|EDQ04984.1| cell division protein FtsH [Oceanibulbus indolifex HEL-45]
          Length = 625

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 57/252 (22%), Positives = 100/252 (39%), Gaps = 27/252 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  EA   L+  +E        ++   +     L VGPPG GKT LA+ +A E 
Sbjct: 139 TFDDVAGIDEAKEELEEIVEFLRNPQKFSRLGGKIPKGALLVGPPGTGKTLLARAIAGEA 198

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F + SG       V   A  +  +    +     ++FIDEI  +            +
Sbjct: 199 GVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKNAPCIVFIDEIDAVGRHRGAGYGGGND 258

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E     S +       ++AAT R  +L   L    RF   + +   +I+
Sbjct: 259 EREQTLNQLLVEMDGFESNEG----VIILAATNRRDVLDPALLRPGRFDRQVTVPNPDIK 314

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I+   A+ T L        ++ + +RGTP  +G  L  + + A +  A+   R + 
Sbjct: 315 GREKILSVHARKTPLGPD----VDLRIIARGTPGFSGADLANLVNEAALMAARVGRRFVT 370

Query: 247 DAALLRLAIDKM 258
                +     M
Sbjct: 371 MIDFEQAKDKVM 382


>gi|50556774|ref|XP_505795.1| YALI0F23595p [Yarrowia lipolytica]
 gi|74632314|sp|Q6C0L7|LONP2_YARLI RecName: Full=Lon protease homolog 2, peroxisomal
 gi|49651665|emb|CAG78606.1| YALI0F23595p [Yarrowia lipolytica]
          Length = 952

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 52/278 (18%), Positives = 93/278 (33%), Gaps = 46/278 (16%)

Query: 55  DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL----------- 103
             +L VGPPG+GKT+LA+ VAR LG  F+  S   +    ++                  
Sbjct: 487 PILLLVGPPGVGKTSLAKSVARALGRKFQRLSLGGVRDESEIRGHRRTYVGAMPGLFIQG 546

Query: 104 -----EDRDVLFIDEIHRL---------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKI 149
                 +  V+ +DEI ++         +  + E+L P       D  +       +  +
Sbjct: 547 LRQVGVNNPVVLLDEIDKIGGANFHGDPAAAMLEVLDPEQNATFRDHYI-------NFPV 599

Query: 150 NLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAAC 209
           +LS+   IA    +  +  PL DR    + L  Y   +   I    AK   +    +A  
Sbjct: 600 DLSKCIFIATANNLDTIPAPLLDRME-TVHLEGYTYMEKLHI----AKKYLVPKQTKANG 654

Query: 210 EIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLT 269
               +      +   +  +    A V + +     +  A   +           D   +T
Sbjct: 655 LEVDQVVIPDDVLLHICTKYTREAGVRNLERKIGAVCRA---KAVDYAKSLSADDGELIT 711

Query: 270 MIARNFGGGP------VGIETISAGLSEPRDAIEDLIE 301
           ++     G        V IE ++  L       ED  +
Sbjct: 712 VVDEAKKGAHSSYDPVVTIENLTDILGMEVYTDEDAQD 749


>gi|66808577|ref|XP_638011.1| replication factor C subunit [Dictyostelium discoideum AX4]
 gi|74853625|sp|Q54MH9|RFC1_DICDI RecName: Full=Probable replication factor C subunit 1; AltName:
           Full=Activator 1 subunit 1
 gi|60466460|gb|EAL64515.1| replication factor C subunit [Dictyostelium discoideum AX4]
          Length = 1401

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 4/93 (4%)

Query: 18  DISLLRPRTLEEFTGQVEA----CSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQV 73
            +   RP+ +E+  G           L  +   A   A   + VL  GPPG+GKT+ A +
Sbjct: 851 WVEKYRPKVIEDIVGNPGIFQEFGKWLDQWNSTAPRDASKKNAVLLSGPPGIGKTSAALL 910

Query: 74  VARELGVNFRSTSGPVIAKAGDLAALLTNLEDR 106
           + ++ G      +        ++  LL+ + D 
Sbjct: 911 ICKQKGFEAIELNASDARSKSEIKRLLSGVSDN 943


>gi|68484222|ref|XP_714003.1| hypothetical protein CaO19.9876 [Candida albicans SC5314]
 gi|68484337|ref|XP_713945.1| hypothetical protein CaO19.2340 [Candida albicans SC5314]
 gi|46435465|gb|EAK94846.1| hypothetical protein CaO19.2340 [Candida albicans SC5314]
 gi|46435525|gb|EAK94905.1| hypothetical protein CaO19.9876 [Candida albicans SC5314]
 gi|238878518|gb|EEQ42156.1| cell division control protein 48 [Candida albicans WO-1]
          Length = 826

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 71/195 (36%), Gaps = 23/195 (11%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHV--------LFVGPPGLGKTTLAQVVARELG 79
           ++  G  +  + ++  +E      +    +        L  GPPG GKT +A+ VA E G
Sbjct: 215 DDIGGCKKQMAQIRELVELPLRHPQLFKSIGIKPPKGILMYGPPGTGKTIMARAVANETG 274

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAMED 131
             F   +GP I          +L       E     ++FIDEI  ++   ++        
Sbjct: 275 AFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPSIIFIDEIDSIAPKRDK-----TNG 329

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
                +V +  +        S   +IAAT R   +   L+   RF   + +   + E   
Sbjct: 330 EVERRVVSQLLTLMDGMKARSNVVVIAATNRPNSIDPALRRFGRFDREVDIGVPDAEGRL 389

Query: 190 TIVQRGAKLTGLAVT 204
            I++   K   LA  
Sbjct: 390 EILRIHTKNMKLADD 404



 Score = 48.5 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 43/195 (22%), Positives = 69/195 (35%), Gaps = 20/195 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
           T ++  G     + LK  +E      +            VLF GPPG GKT LA+ VA E
Sbjct: 486 TWDDIGGLDNIKNELKETVEYPVLHPDQYQKFGLAPTKGVLFFGPPGTGKTLLAKAVATE 545

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAM 129
           +  NF S  GP +          ++  +          V+F+DE+  ++         A 
Sbjct: 546 VSANFISVKGPELLSMWYGESESNIRDIFDKARAAAPTVVFLDELDSIAKARGGSHGDA- 604

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                D +V +  +            +I AT R   +   L    R    I +   +   
Sbjct: 605 -GGASDRVVNQLLTEMDGMNAKKNVFVIGATNRPDQIDPALLRPGRLDQLIYVPLPDEPA 663

Query: 188 LKTIVQRGAKLTGLA 202
             +I+Q   + T L 
Sbjct: 664 RLSILQAQLRNTPLE 678


>gi|328947523|ref|YP_004364860.1| ATP-dependent metalloprotease FtsH [Treponema succinifaciens DSM
           2489]
 gi|328447847|gb|AEB13563.1| ATP-dependent metalloprotease FtsH [Treponema succinifaciens DSM
           2489]
          Length = 689

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 56/248 (22%), Positives = 91/248 (36%), Gaps = 26/248 (10%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVARE 77
              ++  G  EA   L   ++  K          +     L VGPPG GKT LA+ VA E
Sbjct: 208 TRFQDVAGVDEAKEELMELVDFLKQPKKYTDIGGKIPKGALLVGPPGTGKTLLARAVAGE 267

Query: 78  LGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
            GV F   SG       V   A  +  L  +  ++   ++FIDE+  +       L    
Sbjct: 268 AGVPFFRISGSDFVEMFVGVGASRVRDLFRSAREKAPCIIFIDELDAIGKSRVNNLGGND 327

Query: 130 EDFQL---DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
           E  Q     L+  +G       I L      AAT R  +L   L    RF   I ++  +
Sbjct: 328 EREQTLNQLLVEMDGFDNEKGLIIL------AATNRPDILDPALLRPGRFDRQIVVDKPD 381

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           ++  + I++  AK   +  + + +      S         ++      A  A  K +  +
Sbjct: 382 VKGREEILRLHAKNVKIDPSVDFSAVAHATSGFAGADLANIVNEAALLAVRAGRKVVLMD 441

Query: 245 IADAALLR 252
             D A+ +
Sbjct: 442 DFDEAIEK 449


>gi|330805727|ref|XP_003290830.1| cell division cycle protein 48 [Dictyostelium purpureum]
 gi|325079040|gb|EGC32661.1| cell division cycle protein 48 [Dictyostelium purpureum]
          Length = 792

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 70/198 (35%), Gaps = 29/198 (14%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARA--------EALDHVLFVGPPGLGKTTLAQVVARELG 79
           ++  G  +    ++  +E              +    +L  GPPG GKT +A+ VA E G
Sbjct: 202 DDIGGVRKQLGQIRELVELPLRHPQLFKNIGVKPPKGILLYGPPGCGKTMIARAVANETG 261

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIV---EEILYPA 128
             F   +GP I          +L       E     ++FIDEI  ++      +  +   
Sbjct: 262 AFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTQGEVERR 321

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           +    L LM G    A  +        ++ AT R   +   L+   RF   I +   +  
Sbjct: 322 IVSQLLTLMDGLKSRAHVI--------VMGATNRPNSIDPALRRFGRFDREIDITIPDAT 373

Query: 187 DLKTIVQRGAKLTGLAVT 204
               I++   K   L  T
Sbjct: 374 GRLEILRIHTKNMKLDET 391



 Score = 52.4 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 72/198 (36%), Gaps = 20/198 (10%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVAR 76
            T E+  G       L+  ++      E            VLF GPPG GKT LA+ +A 
Sbjct: 472 TTWEDIGGLEGVKRELRETVQYPVEHPEKFRKFGMQPSKGVLFYGPPGCGKTLLAKAIAN 531

Query: 77  ELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPA 128
           E   NF S  GP +     G+  A +  L D+       VLF DE+  ++         A
Sbjct: 532 ECQANFISIKGPELLTMWFGESEANVRELFDKARQAAPCVLFFDELDSIARSRGSSQGDA 591

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
                 D ++ +  +            +I AT R  ++   +    R    I +   ++ 
Sbjct: 592 GGAG--DRVINQILTEMDGMNAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDLP 649

Query: 187 DLKTIVQRGAKLTGLAVT 204
               I++   K + +A  
Sbjct: 650 SRMAILKACLKKSPVAKD 667


>gi|301051803|ref|YP_003790014.1| cell division protein [Bacillus anthracis CI]
 gi|300373972|gb|ADK02876.1| cell division protein [Bacillus cereus biovar anthracis str. CI]
          Length = 633

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 62/248 (25%), Positives = 88/248 (35%), Gaps = 27/248 (10%)

Query: 26  TLEEFTG-----QV--EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G     Q   E    LK   + A+  A     VL VGPPG GKT LA+ VA E 
Sbjct: 160 RFRDVAGADEEKQELVEVVEFLKDPRKFAEVGARIPKGVLLVGPPGTGKTLLARAVAGEA 219

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG       V   A  +  L  N +     ++FIDEI  +       L    +
Sbjct: 220 GVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCIIFIDEIDAVGRQRGAGLGGGHD 279

Query: 131 DFQLD----LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
           + +      L+  +G  A    I      +IAAT R  +L   L    RF   I ++  +
Sbjct: 280 EREQTLNQLLVEMDGFGANEGII------IIAATNRPDILDPALLRPGRFDRQITVDRPD 333

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +   + +++  A+   L                +      LL      A     K I   
Sbjct: 334 VNGREAVLKVHARNKPLDENINLRAIATRTPGFSGADLENLLNEAALVAARQDKKKIDMS 393

Query: 245 IADAALLR 252
             D A  R
Sbjct: 394 DIDEATDR 401


>gi|227891816|ref|ZP_04009621.1| ATPase of the AAA+ class [Lactobacillus salivarius ATCC 11741]
 gi|227866381|gb|EEJ73802.1| ATPase of the AAA+ class [Lactobacillus salivarius ATCC 11741]
          Length = 535

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 73/203 (35%), Gaps = 37/203 (18%)

Query: 55  DHVLFVGPPGLGKTTLAQVVAR--------ELGVNFRSTSGPVIAK-AGDLAALLTNLED 105
            H++F GPPG GKTT+A++VAR        E      +    +  K  GDL+  +    D
Sbjct: 311 HHMIFEGPPGTGKTTVARIVARLFYALGILENTTVIETKRNELEGKWVGDLSGKINEKVD 370

Query: 106 ---RDVLFIDEIHRL----------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152
                VLFIDE H+L            +++  +     D +  + +  G +    +    
Sbjct: 371 SALGGVLFIDEAHQLYNKEDPYDKGKQVIQAFVPRLENDGEKFIAIIAGYTKEMEEFL-- 428

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIA 212
                            L  RF   I    Y+ + +  IV    K   +   ++    +A
Sbjct: 429 ------------KFDPGLASRFQHKIIFESYKPQVVAQIVVNILKKNKIEFNEKYVKAVA 476

Query: 213 MRS-RGTPRIAGRLLRRVRDFAE 234
           +      P       R  R++A+
Sbjct: 477 INLYDQIPDDKKSNARWARNYAQ 499


>gi|146293935|ref|YP_001184359.1| ATP-dependent metalloprotease FtsH [Shewanella putrefaciens CN-32]
 gi|145565625|gb|ABP76560.1| membrane protease FtsH catalytic subunit [Shewanella putrefaciens
           CN-32]
          Length = 657

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 93/250 (37%), Gaps = 23/250 (9%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAA-------KARAEALDHVLFVGPPGLGKTTLAQVVARE 77
            T  +  G  EA   +K  ++         K        VL VGPPG GKT LA+ +A E
Sbjct: 159 TTFADVAGCDEAKEEVKELVDYLRDPTKFQKLGGRIPTGVLMVGPPGTGKTLLAKAIAGE 218

Query: 78  LGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
             V F + SG       V   A  +  +    +     ++FIDEI  +       L    
Sbjct: 219 SKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKSAPCIIFIDEIDAVGRQRGAGLGGGH 278

Query: 130 EDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           ++ +  L  M+ E       +       +IAAT R  +L + L    RF   + +   ++
Sbjct: 279 DEREQTLNQMLVEMDGFEGNEG----VIVIAATNRPDVLDSALLRPGRFDRQVVVGLPDV 334

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
              + I++   +   L+   +A+         +      L+     FA   + + +  E 
Sbjct: 335 RGREQILKVHMRKVPLSEDVKASVIARGTPGFSGADLANLVNEAALFAARGNRRVVGMEE 394

Query: 246 ADAALLRLAI 255
            + A  ++ +
Sbjct: 395 FERAKDKIMM 404


>gi|114674816|ref|XP_001143707.1| PREDICTED: lon protease homolog, mitochondrial isoform 1 [Pan
           troglodytes]
          Length = 763

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 72/192 (37%), Gaps = 33/192 (17%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI  ++ R      +L F GPPG+GKT++A+ +AR L   +   S
Sbjct: 293 EDHYGMEDVKKRILEFIAVSQLRGSTQGKILCFYGPPGVGKTSIARSIARALNREYFRFS 352

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ I E+ ++    +        
Sbjct: 353 VGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLILIHEVDKIGRGYQGDPSSALL 412

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V ++LS+   I        +  PL+DR  + I ++ 
Sbjct: 413 ELLDPEQNANFLD-------HYLDVPVDLSKVLFICTANVTDTIPEPLRDRMEM-INVSG 464

Query: 183 YEIEDLKTIVQR 194
           Y  ++   I +R
Sbjct: 465 YVAQEKLAIAER 476


>gi|28188573|gb|AAN46212.1| unknown protein [Arabidopsis thaliana]
 gi|28188575|gb|AAN46213.1| unknown protein [Arabidopsis thaliana]
 gi|28188577|gb|AAN46214.1| unknown protein [Arabidopsis thaliana]
 gi|28188579|gb|AAN46215.1| unknown protein [Arabidopsis thaliana]
 gi|28188581|gb|AAN46216.1| unknown protein [Arabidopsis thaliana]
 gi|28188583|gb|AAN46217.1| unknown protein [Arabidopsis thaliana]
 gi|28188585|gb|AAN46218.1| unknown protein [Arabidopsis thaliana]
 gi|28188587|gb|AAN46219.1| unknown protein [Arabidopsis thaliana]
 gi|28188589|gb|AAN46220.1| unknown protein [Arabidopsis thaliana]
          Length = 316

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 49/279 (17%), Positives = 93/279 (33%), Gaps = 42/279 (15%)

Query: 9   SRNVSQEDADISLLRPR---------TLEEFTGQVEACSNLKVFIEAAKARAEALDH--- 56
           S+ V+ ++     +RP          T  +     E   +L+  +     R +       
Sbjct: 1   SKEVAPDNEFEKRIRPEVIPANEIGVTFADIGSLDETKESLQELVMLPLRRPDLFKGGLL 60

Query: 57  -----VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLED 105
                +L  GPPG GKT +A+ +A E G +F + S   I          ++ AL T    
Sbjct: 61  KPCRGILLFGPPGTGKTMMAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAK 120

Query: 106 --RDVLFIDEIH-----RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIA 158
               ++F+DE+      R  +   E +     +F              +     R  ++A
Sbjct: 121 VSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFM-------THWDGLMSNAGDRILVLA 173

Query: 159 ATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGT 218
           AT R   L   +  RF   I +    +E  + I++           D         ++ T
Sbjct: 174 ATNRPFDLDEAIIRRFERRIMVGLPSVESREKILRTLLSKEKTENLD-----FQELAQMT 228

Query: 219 PRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257
              +G  L+     A     + + ++       R   ++
Sbjct: 229 DGYSGSDLKNFCTTAAYRPVRELIKQECLKDQERRKREE 267


>gi|46110102|ref|XP_382109.1| hypothetical protein FG01933.1 [Gibberella zeae PH-1]
          Length = 395

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 78/229 (34%), Gaps = 23/229 (10%)

Query: 27  LEEFTGQVEACSNLK----------VFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
            ++  G       LK               A     A   VL  GPPG GKT LA+ VA 
Sbjct: 110 FDDIGGLDTIIEELKESIIYPLTMPHLYSHAAPLLSAPSGVLLYGPPGCGKTMLAKAVAH 169

Query: 77  ELGVNFRSTSGPVIAKA------GDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPA 128
           E G +F +     + +         + A+ +        ++FIDEI  +        + A
Sbjct: 170 ESGASFINLHISTLTEKWYGDSNKIVRAVFSLARKMQPAIIFIDEIDAVLGTRRSGEHEA 229

Query: 129 MEDFQLDLMVGEGPSARSVKINLS-RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
               + + M        S    +  R  ++ AT R+  +   +  R      +     E 
Sbjct: 230 SGMVKAEFMTLWDGLTSSNSSGMPARIMVLGATNRINDIDEAILRRMPKKFPVTLPGTEQ 289

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL-RRVRDFAEV 235
            + I+Q    +     TD     +   SR T  ++G  +    RD A V
Sbjct: 290 RRRILQ---LVLQDTKTDPEHFNLDYVSRITAGLSGSDIKEACRDAAMV 335


>gi|308062041|gb|ADO03929.1| DNA polymerase III subunits gamma and tau [Helicobacter pylori
           Cuz20]
          Length = 571

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/256 (16%), Positives = 77/256 (30%), Gaps = 59/256 (23%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA------- 75
           RP+   E  GQ      L + ++  +         LF G  G GKT+ +++ A       
Sbjct: 9   RPKHFSELVGQESVAKTLSLALDNQRLANAY----LFSGLRGSGKTSSSRIFARALMCEK 64

Query: 76  -----------------RELGVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFID 112
                                ++     G       D+  L+             +  ID
Sbjct: 65  GPKAVPCDTCTQCQSALNNHHIDIIEMDGASNRGIDDVRNLIEQTRYKPSFGRYKIFIID 124

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H  +      L   +E+                    S    + ATT    L   +  
Sbjct: 125 EVHMFTTEAFNALLKTLEE------------------PPSHVKFLLATTDALKLPATILS 166

Query: 173 R---FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           R   F          I  LKTI++       ++    A  ++A   +G+ R    LL + 
Sbjct: 167 RTQHFRFKKIPENSVISHLKTILE----KEQVSYETSALEKLAHSGQGSLRDTITLLEQA 222

Query: 230 RDFAEVAHAKTITREI 245
            ++ +    ++   E+
Sbjct: 223 INYCDNTITESKVAEM 238


>gi|332707482|ref|ZP_08427528.1| membrane protease FtsH catalytic subunit [Lyngbya majuscula 3L]
 gi|332353740|gb|EGJ33234.1| membrane protease FtsH catalytic subunit [Lyngbya majuscula 3L]
          Length = 626

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 54/263 (20%), Positives = 91/263 (34%), Gaps = 27/263 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  EA + L+  ++  K         A     VL VGPPG GKT +A+ VA E 
Sbjct: 167 TFNDVAGVEEAKTELQEIVDFLKTPQRFTNIGARIPKGVLLVGPPGTGKTLMAKAVAGEA 226

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEIL----Y 126
           GV F S SG         A A  +  L    + +   ++FIDE+  +             
Sbjct: 227 GVPFFSISGSEFVELFVGAGAARVRDLFEQAKKKAPCIIFIDELDAIGKSRASGSGFVGG 286

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
               +  L+ ++ E     +         ++AAT R   L   L    RF   + ++  +
Sbjct: 287 NDEREQTLNQLLTEMDGFAAGDAT---VIVLAATNRPETLDPALLRPGRFDRQVLVDRPD 343

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +     I++  AK   L    +                  L+      A     + +T+ 
Sbjct: 344 LSGRLKILEIYAKKVKLGEDVDLKAIATRTPGFAGADLANLVNEAALLAARNRKEKVTQA 403

Query: 245 IADAALLRLAIDKMGFDQLDLRY 267
               A+ R+     G ++     
Sbjct: 404 DFAEAIERVVA---GLEKKSRVL 423


>gi|322820539|gb|EFZ27127.1| transitional endoplasmic reticulum ATPase, putative [Trypanosoma
           cruzi]
          Length = 778

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 50/259 (19%), Positives = 88/259 (33%), Gaps = 34/259 (13%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------------VLFVGPPGLGKTTLA 71
            L++  G  +     K  ++  +     + H              +L  GPPG GKT +A
Sbjct: 185 RLDD-VGYDDIGGCRKQLVQIREMVELPIRHPELFKNIGIKPPRGILLYGPPGSGKTLIA 243

Query: 72  QVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEE 123
           + VA E G  F   +GP I         G+L       E     ++FIDEI  ++   E+
Sbjct: 244 RAVANETGAFFFLINGPEIMSKMAGESEGNLRKAFEEAEKNAPSIVFIDEIDSIAPKREK 303

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLN 181
                 +      +V +  +        S+  ++AAT R   +   L+   RF   I + 
Sbjct: 304 -----AQGEVEKRIVSQLLTLMDGLKTRSQVIVMAATNRPNSIDPALRRFGRFDREIDIG 358

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA-EVAHAKT 240
             +      I++   K   L   D       +       +   L +   + A +    K 
Sbjct: 359 VPDDIGRLEILRIHTKNMKL---DPGVDVEKIAKDSHGYVGADLAQLCTEAAMQCVREKM 415

Query: 241 ITREIADAALLRLAIDKMG 259
              +  D  +    +D M 
Sbjct: 416 SVIDWDDDTIDAEVLDSMA 434



 Score = 52.0 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 54/264 (20%), Positives = 94/264 (35%), Gaps = 36/264 (13%)

Query: 2   MDREGLLSRNVSQEDADISL-------LR------PR-TLEEFTGQVEACSNLKVFIEAA 47
           +D E L S  V+ E    +L       LR      P  T  +  G ++    L+  ++  
Sbjct: 425 IDAEVLDSMAVTNEHFRDALTKTNPSALRETHVETPHVTWSDVGGLLDVKRELQELVQYP 484

Query: 48  --------KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLA 97
                   K        VLF GPPG GKT LA+ +A E   NF S  GP +     G+  
Sbjct: 485 VEFPWKFEKYGISPPKGVLFYGPPGCGKTLLAKAIATECQANFISIKGPELLTMWFGESE 544

Query: 98  ALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINL 151
           A + ++ D+       VLF DE+  ++           +    D ++ +  +      + 
Sbjct: 545 ANVRDVFDKARAAAPCVLFFDELDSVARAR----GSHGDGGASDRVINQILTEMDGMNSK 600

Query: 152 SRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAAC 209
               +I AT R  +L   +    R    I +   +      I++   + + L+   +   
Sbjct: 601 KNVFIIGATNRPDVLDPAIMRPGRLDQLIYIPLPDRASRVAIIKANFRKSPLSADVDVDK 660

Query: 210 EIAMRSRGTPRIAGRLLRRVRDFA 233
             A     +      + +R    A
Sbjct: 661 IAAATHGFSGADLSGICQRACKMA 684


>gi|322795198|gb|EFZ18020.1| hypothetical protein SINV_06601 [Solenopsis invicta]
          Length = 784

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/212 (20%), Positives = 72/212 (33%), Gaps = 31/212 (14%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           ++   QE   +  LRP             +  +                L  GPPG GKT
Sbjct: 569 AKQALQEMVILPSLRPELF------TGLRTPARGL--------------LLFGPPGNGKT 608

Query: 69  TLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSII 120
            LA+ VA +    F S S   +           + AL     +    V+FIDE+  L   
Sbjct: 609 LLARAVATQCNATFFSISAASLTSKYVGEGEKLVRALFAIAREFQPSVIFIDEVDSLLSE 668

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            ++  + A    + + +V              R  ++AAT R   L      RF   + +
Sbjct: 669 RKDNEHEASRRLKTEFLVEFDG---LPCNPEERVLVMAATNRPQELDEAALRRFTKRVYV 725

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIA 212
              + +    +++R        +T E   E+A
Sbjct: 726 TLPDSQTRIVLLRRLLAKHNDPLTSEELNEMA 757


>gi|309777529|ref|ZP_07672482.1| cell division protease FtsH [Erysipelotrichaceae bacterium 3_1_53]
 gi|308914704|gb|EFP60491.1| cell division protease FtsH [Erysipelotrichaceae bacterium 3_1_53]
          Length = 618

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/113 (30%), Positives = 50/113 (44%), Gaps = 15/113 (13%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +T  +  GQ EA + L+  +E  K+        A+     L VGPPG GKT LA+ VA E
Sbjct: 166 KTFLDVAGQEEAKAALQEMVEFLKSPERYKKIGAQMPKGALLVGPPGTGKTLLAKAVAGE 225

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVE 122
             V F S SG           A  +  L     ++   ++FIDEI  +    +
Sbjct: 226 ANVPFFSISGSEFVEMFVGRGAARVRDLFKQAREKAPCIVFIDEIDTIGKKRD 278


>gi|315586612|gb|ADU40993.1| DNA polymerase III, gamma/tau subunit DnaX [Helicobacter pylori
           35A]
          Length = 559

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 78/256 (30%), Gaps = 59/256 (23%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA------- 75
           RP+   E  GQ      L + ++  +         LF G  G GKT+ +++ A       
Sbjct: 9   RPKHFSELVGQESVAKTLSLALDNQRLANAY----LFSGLRGSGKTSSSRIFARALMCEE 64

Query: 76  -----------------RELGVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFID 112
                                ++     G       D+  L+             +  ID
Sbjct: 65  GPKAVPCDTCTQCQSALNNHHIDIIEMDGASNRGIDDVRNLIEQTRYKPSFGRYKIFIID 124

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H  +      L   +E+                    S    + ATT    L   +  
Sbjct: 125 EVHMFTTEAFNALLKTLEE------------------PPSHVKFLLATTDALKLPATILS 166

Query: 173 R---FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           R   F          I  LKTI++       ++    A  ++A   +G+ R    LL + 
Sbjct: 167 RTQHFRFKKIPENSVISHLKTILE----KEQVSYETSALEKLAHSGQGSLRDTITLLEQA 222

Query: 230 RDFAEVAHAKTITREI 245
            ++ + A  ++   E+
Sbjct: 223 INYCDNAITESKVAEM 238


>gi|282163672|ref|YP_003356057.1| proteasome-activating nucleotidase [Methanocella paludicola SANAE]
 gi|282155986|dbj|BAI61074.1| proteasome-activating nucleotidase [Methanocella paludicola SANAE]
          Length = 412

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 80/221 (36%), Gaps = 12/221 (5%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLT 101
           K   +    VL  GPPG GKT LA+ VA     +F    G  +        A  +  L  
Sbjct: 182 KVGIQPPKGVLLYGPPGTGKTLLAKAVAHSTKASFIRIIGSELVQKYIGEGARMVRELFE 241

Query: 102 NLEDR--DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA 159
             +++   ++FIDEI  +     + +     D ++   + +  +            ++AA
Sbjct: 242 LAKEKSPSIIFIDEIDSIGAKRLDSI--TSGDREVQRTLVQLLAEMDGFDPRGNVRILAA 299

Query: 160 TTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRG 217
           T R  +L   L    RF   I++     E    I++  A+   LA          M    
Sbjct: 300 TNRPDILDPALLRPGRFDRIIKVPMPNAEARTEILKIHARRMNLADDVNLKKIGQMTDDT 359

Query: 218 TPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKM 258
           +      ++     FA   +   +T +    A+ ++  ++ 
Sbjct: 360 SGADLSAIVMEAGMFAIRGNRDIVTNDDFTQAMQKVLGERN 400


>gi|255569991|ref|XP_002525958.1| Cell division protease ftsH, putative [Ricinus communis]
 gi|223534690|gb|EEF36382.1| Cell division protease ftsH, putative [Ricinus communis]
          Length = 636

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 60/251 (23%), Positives = 93/251 (37%), Gaps = 28/251 (11%)

Query: 26  TLEEFTGQV-------EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
             ++  G         E  S ++  I   K  A+    VL VGPPG GKT LA+ VA E 
Sbjct: 346 NFDDVEGVDAAKIELMEIVSCMQGAINYQKLGAKIPRGVLLVGPPGTGKTLLARAVAGEA 405

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAME 130
           GV F S S            A  +  L          ++FIDE+  +        +    
Sbjct: 406 GVPFFSVSASEFVELFVGRGAARIRDLFKVARKSAPSIIFIDELDAVGGKR-GRSFNDER 464

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
           D  L+ ++ E     S      +  +IAAT R   L   L    RF   + +   + E  
Sbjct: 465 DQTLNQLLTEMDGFESDM----KVVVIAATNRPEALDQALCRPGRFSRKVLVGEPDEEGR 520

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD----FAEVAHAKTITRE 244
           + I+     L G+ + ++      + +  TP   G  L  + +     A     +T+TRE
Sbjct: 521 EKIL--SVHLRGVPLEEDTDLICNLVASLTPGFVGADLANIVNEAALLAARRGGETVTRE 578

Query: 245 IADAALLRLAI 255
               A+ R   
Sbjct: 579 DIMEAIERAKF 589


>gi|238496477|ref|XP_002379474.1| mitochondrial serine protease Pim1, putative [Aspergillus flavus
           NRRL3357]
 gi|220694354|gb|EED50698.1| mitochondrial serine protease Pim1, putative [Aspergillus flavus
           NRRL3357]
          Length = 1114

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/215 (21%), Positives = 76/215 (35%), Gaps = 38/215 (17%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI   K R      +L  VGPPG+GKT++ + +AR L   +   S
Sbjct: 575 EDHYGLKDVKDRILEFIAVGKLRGTVEGKILCLVGPPGVGKTSIGKSIARALNRQYYRFS 634

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDEI ++    +        
Sbjct: 635 VGGLTDVAEIKGHRRTYVGALPGRIIQALKKCQTENPLILIDEIDKIGRGHQGDPSSALL 694

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V ++LS+   +        +  PL DR  + I L+ 
Sbjct: 695 ELLDPEQNSSFLD-------HYMDVPVDLSKVLFVCTANVTDTIPRPLLDRMEL-IELSG 746

Query: 183 YEIEDLKTIVQR----GAKLTG-LAVTDEAACEIA 212
           Y  ++   I QR     A+    L   D    E A
Sbjct: 747 YVADEKMAIAQRYLAPAARELTGLKDVDVNLKEEA 781


>gi|170036949|ref|XP_001846323.1| spermatogenesis associated factor [Culex quinquefasciatus]
 gi|167879951|gb|EDS43334.1| spermatogenesis associated factor [Culex quinquefasciatus]
          Length = 797

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/257 (17%), Positives = 83/257 (32%), Gaps = 28/257 (10%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVAR 76
            T  +  G       L+  ++      +            VLF GPPG GKT LA+ +A 
Sbjct: 465 TTWTDIGGLENVKRELQELVQYPVEHPDKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIAN 524

Query: 77  ELGVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127
           E   NF S  GP +         A   D+     +     VLF DE+  ++      +  
Sbjct: 525 ECQANFISVKGPELLTMWFGESEANVRDIFDKARSASP-CVLFFDELDSIAKSRGGNVGD 583

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           A      D ++ +  +            +I AT R  ++   +    R    I +   + 
Sbjct: 584 A--GGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDD 641

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA------EVAHAK 239
           +  + I++   + + +A   +      +    +      + +R    A           +
Sbjct: 642 KSREAILKANLRKSPVAGDVDLTYVAKVTQGFSGADLTEICQRACKLAIRQAIEAEIRRE 701

Query: 240 TITREIADAALLRLAID 256
               E   +A+     D
Sbjct: 702 RERTENQSSAMDMDEED 718



 Score = 53.5 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 52/263 (19%), Positives = 89/263 (33%), Gaps = 38/263 (14%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARA--------EALDHVLFVGPPGLGKTTLAQVVARELG 79
           ++  G  +  + +K  +E              +    +L  GPPG GKT +A+ VA E G
Sbjct: 195 DDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVANETG 254

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMED 131
             F   +GP I          +L       E     ++FIDEI  ++   E+        
Sbjct: 255 AFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAIIFIDEIDAIAPKREKTHGEVERR 314

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
               L+       +S     +   ++AAT R   +   L+   RF   I +   +     
Sbjct: 315 IVSQLLTLMDGMKKS-----AHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRL 369

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            +++   K   LA  D    +IA  S G        L               +       
Sbjct: 370 EVLRIHTKNMKLA-DDVDLEQIAAESHGHVGADLASL--------------CSEAALQQI 414

Query: 250 LLRLAIDKMGFDQLDLRYLTMIA 272
             ++ +  +  DQ+D   L  +A
Sbjct: 415 REKMDLIDLEDDQIDAEVLNSLA 437


>gi|110597796|ref|ZP_01386079.1| ATP-dependent metalloprotease FtsH [Chlorobium ferrooxidans DSM
           13031]
 gi|110340521|gb|EAT59004.1| ATP-dependent metalloprotease FtsH [Chlorobium ferrooxidans DSM
           13031]
          Length = 661

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 55/247 (22%), Positives = 92/247 (37%), Gaps = 23/247 (9%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAA-------KARAEALDHVLFVGPPGLGKTTLAQVVARE 77
            T ++  G  EA   L+  +E         K   +    VL +GPPG GKT LA+ +A E
Sbjct: 207 TTFKDVAGVDEAVEELQETVEFLTNPEKFQKIGGKIPKGVLLLGPPGTGKTLLAKAIAGE 266

Query: 78  LGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
             V F S SG       V   A  +  L    +     ++FIDEI  +       L    
Sbjct: 267 AKVPFFSISGADFVEMFVGVGAARVRDLFEQAKKNSPCIIFIDEIDAVGRSRGAGLGGGH 326

Query: 130 EDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           ++ +  L  ++ E     + +       LIAAT R  +L   L    RF   I ++  +I
Sbjct: 327 DEREQTLNQLLVEMDGFTTSE----NVILIAATNRPDVLDTALLRPGRFDRQITIDKPDI 382

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
              + I++   + T L    + + +       +      L+      A       I+ + 
Sbjct: 383 RGREAILKIHTRNTPLGENVDISVQAKSTPGFSGADLANLVNEAALLAARNGQDLISADN 442

Query: 246 ADAALLR 252
            + A  +
Sbjct: 443 FEQARDK 449


>gi|33603963|ref|NP_891523.1| chromosomal replication initiation protein [Bordetella
           bronchiseptica RB50]
 gi|61212740|sp|Q7WDJ9|DNAA_BORBR RecName: Full=Chromosomal replication initiator protein DnaA
 gi|33568939|emb|CAE35353.1| chromosomal replication initiator protein [Bordetella
           bronchiseptica RB50]
          Length = 480

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 78/228 (34%), Gaps = 35/228 (15%)

Query: 43  FIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL---GVNFRSTSGPVIAKAGDLAAL 99
            ++ A+    + + +   G  GLGKT L   +   +   G   R           D+   
Sbjct: 166 ALQVAENPGTSYNPLFLYGGVGLGKTHLIHAIGNAMVAAGTGVRVRYVHADQYVSDVVKA 225

Query: 100 LTN---------LEDRDVLFIDEIHRL---SIIVEEILYP--AMEDFQLDLMVGEGPSAR 145
                           D+L ID+I      +   EE  Y   AM   +  +++      +
Sbjct: 226 YQRKAFDDFKRYYHSLDLLLIDDIQFFSGKNRTQEEFFYAFEAMVAQRKQIIITSDTYPK 285

Query: 146 SVKINLSRFTLIAATTRVGLLTNPLQDRF--GIPIRLNFYEIEDLKTIVQRGAKLTGLAV 203
                            +  + + L  RF  G+ + +   E+E    I+ R A+  G+ +
Sbjct: 286 ----------------ELSGIDSRLISRFDSGLTVAIEPPELEMRVAILLRKAESEGVPM 329

Query: 204 TDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
            +E A  IA   R   R     LR+V  +A       +T ++   AL 
Sbjct: 330 PEEVAFFIAKHLRSNVRELEGALRKVLAYARFHGRDVLTVDVCKEALK 377


>gi|114046590|ref|YP_737140.1| membrane protease FtsH catalytic subunit [Shewanella sp. MR-7]
 gi|113888032|gb|ABI42083.1| membrane protease FtsH catalytic subunit [Shewanella sp. MR-7]
          Length = 657

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 93/250 (37%), Gaps = 23/250 (9%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAA-------KARAEALDHVLFVGPPGLGKTTLAQVVARE 77
            T  +  G  EA   +K  ++         K        VL VGPPG GKT LA+ +A E
Sbjct: 159 TTFADVAGCDEAKEEVKELVDYLRDPTKFQKLGGRIPTGVLMVGPPGTGKTLLAKAIAGE 218

Query: 78  LGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
             V F + SG       V   A  +  +    +     ++FIDEI  +       L    
Sbjct: 219 SKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKSAPCIIFIDEIDAVGRQRGAGLGGGH 278

Query: 130 EDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           ++ +  L  M+ E       +       +IAAT R  +L + L    RF   + +   ++
Sbjct: 279 DEREQTLNQMLVEMDGFEGNEG----IIVIAATNRPDVLDSALLRPGRFDRQVVVGLPDV 334

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
              + I++   +   L+   +A+         +      L+     FA   + + +  E 
Sbjct: 335 RGREQILKVHMRKVPLSEDVKASVIARGTPGFSGADLANLVNEAALFAARGNRRVVGMEE 394

Query: 246 ADAALLRLAI 255
            + A  ++ +
Sbjct: 395 FERAKDKIMM 404


>gi|307197038|gb|EFN78410.1| Replication factor C subunit 1 [Harpegnathos saltator]
          Length = 1045

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 16/114 (14%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACS---NLKVFIE------------AAKARAEA 53
           + NVS E   +   RP+TL++  GQ    S   NL V++             + +   ++
Sbjct: 492 TTNVSSE-PLVEKYRPKTLKQIIGQQGDRSSAHNLYVWLRDWHKNRQDPKSSSKQNNGQS 550

Query: 54  LDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRD 107
               L  G PG+GKTT AQ+V +ELG +    +         L   ++ L    
Sbjct: 551 FKAALLSGSPGVGKTTTAQIVCKELGYDLLEFNASDTRSKTLLKEQVSGLLSNT 604


>gi|289621142|emb|CBI51925.1| unnamed protein product [Sordaria macrospora]
          Length = 824

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 77/226 (34%), Gaps = 17/226 (7%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLED 105
           +    VL  GPPG GKT +A+ VA E G  F   +GP I          +L       E 
Sbjct: 256 KPPRGVLLYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEK 315

Query: 106 RD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
               ++FIDEI  ++   ++             +V +  +        S   ++AAT R 
Sbjct: 316 NSPAIIFIDEIDSIAPKRDK-----TNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRP 370

Query: 164 GLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRI 221
             +   L+   RF   + +   +      I+Q   K   L    +     A         
Sbjct: 371 NSIDPALRRFGRFDREVDIGIPDPTGRLEILQIHTKNMKLGDDVDLEQIAAETHGYVGSD 430

Query: 222 AGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRY 267
              L        +    K    ++ +  +    +D +G  Q + R+
Sbjct: 431 IAALCSEAAM--QQIREKMDLIDLDEDTIDAEVLDSLGVTQENFRF 474



 Score = 50.1 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 53/236 (22%), Positives = 84/236 (35%), Gaps = 35/236 (14%)

Query: 2   MDREGLLSRNVSQED-------ADISLLR-------PR-TLEEFTGQVEACSNLKVFIEA 46
           +D E L S  V+QE+       ++ S LR       P    E+  G       L+  ++ 
Sbjct: 457 IDAEVLDSLGVTQENFRFALGVSNPSALREVAVVEVPNVRWEDIGGLETVKQELRESVQY 516

Query: 47  AKARAEAL--------DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AK 92
                E            VLF GPPG GKT LA+ VA E   NF S  GP +        
Sbjct: 517 PVDHPEKFLKFGLSPSRGVLFYGPPGTGKTMLAKAVANECAANFISVKGPELLSMWFGES 576

Query: 93  AGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN 150
             ++  +          V+F+DE+  ++      +  A      D +V +  +      +
Sbjct: 577 ESNIRDIFDKARAAAPCVVFLDELDSIAKARGGSVGDA--GGASDRVVNQLLTEMDGMTS 634

Query: 151 LSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVT 204
                +I AT R   L   L    R    I +   +      I++   + T +A  
Sbjct: 635 KKNVFVIGATNRPEQLDPALCRPGRLDSLIYVPLPDEAGRLGILKAQLRKTPVASD 690


>gi|158321332|ref|YP_001513839.1| ATP-dependent metalloprotease FtsH [Alkaliphilus oremlandii OhILAs]
 gi|158141531|gb|ABW19843.1| ATP-dependent metalloprotease FtsH [Alkaliphilus oremlandii OhILAs]
          Length = 623

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 47/200 (23%), Positives = 73/200 (36%), Gaps = 24/200 (12%)

Query: 25  RTLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +T  +  GQ EA   L   +       + ++  A      L VGPPG GKT LA+ VA E
Sbjct: 162 KTFADVAGQDEAKEALTEIVDFLHHPKKYSEIGATLPKGALLVGPPGTGKTLLARAVAGE 221

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
             V F S SG           A  +  L     ++   ++FIDEI  +    +       
Sbjct: 222 ANVPFFSISGSEFVEMFVGMGAAKVRDLFKQANEKAPCIVFIDEIDTIGKKRDNGSGIGG 281

Query: 130 ED---FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
            D     L+ ++ E               ++AAT R   L   L    RF   I +   +
Sbjct: 282 NDEREQTLNQLLTEMDGFD----GKKGVVILAATNRPESLDKALLRPGRFDRRIPVELPD 337

Query: 185 IEDLKTIVQRGAKLTGLAVT 204
           +   + I++  A+       
Sbjct: 338 LAGREAILKVHAEKIKKKSD 357


>gi|158301096|ref|XP_320860.4| AGAP011652-PA [Anopheles gambiae str. PEST]
 gi|157013476|gb|EAA00408.4| AGAP011652-PA [Anopheles gambiae str. PEST]
          Length = 749

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 58/242 (23%), Positives = 101/242 (41%), Gaps = 33/242 (13%)

Query: 26  TLEEFTGQVEACSNLKVFI--------EAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +L+ F G  E  + L++ I           +     L  +L  GPPG  KTTLA+ +A E
Sbjct: 470 SLDSFGGMDELKALLRLCIVEQLANPARFQRLGIHPLRGILLYGPPGCAKTTLAKCLAAE 529

Query: 78  LGVNFRSTSGPVIAK--AGDLAALLTNL--EDRD----VLFIDEIHRL--SIIVEEILY- 126
            G+ F S S   +     GD   L+T +  E R     V+F+DEI  L  +     +   
Sbjct: 530 TGMTFLSLSAAQVYSPYVGDAEKLITRVFNEARTNAPAVVFLDEIDSLVGNRGTGGMKGG 589

Query: 127 -PAMEDFQLDLMVGE-------GPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGI 176
             A+    L  ++ E         +A ++  +  R  +IAAT R  ++ + L    R   
Sbjct: 590 SSAVNMGVLSTLLMEMDGIGQAEQAASALSEDAKRVVVIAATNRPDMVDDALLRPGRLTK 649

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
            I +   + +    I+++ A  T +   ++   E+   +  T R +G  L+ +   A + 
Sbjct: 650 LIHVPAPDGKGRLEILRKIA--TNVPFAEDVQLELV--AEQTERYSGADLQNLCTQAALN 705

Query: 237 HA 238
            A
Sbjct: 706 AA 707


>gi|114765727|ref|ZP_01444825.1| ATP-dependent metalloprotease FtsH [Pelagibaca bermudensis
           HTCC2601]
 gi|114541944|gb|EAU44979.1| ATP-dependent metalloprotease FtsH [Roseovarius sp. HTCC2601]
          Length = 637

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 93/249 (37%), Gaps = 23/249 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  EA   L+  +E        ++   +     L VGPPG GKT LA+ +A E 
Sbjct: 152 TFDDVAGIDEAKEELEEIVEFLRNPQKFSRLGGKIPKGALLVGPPGTGKTLLARAIAGEA 211

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F + SG       V   A  +  +    +     ++FIDEI  +            +
Sbjct: 212 GVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKNAPCIVFIDEIDAVGRNRGSGYGGGND 271

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E     + +       +IAAT R  +L   L    RF   + +   +I+
Sbjct: 272 EREQTLNQLLVEMDGFEANEG----VIIIAATNRRDVLDPALLRPGRFDRQVMVGNPDIK 327

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I+   A+ T L    +           +      L+      A     + +T E  
Sbjct: 328 GREKILGVHARKTPLGPDVDLRIIARGTPGFSGADLANLVNEAALMAARVGRRFVTMEDF 387

Query: 247 DAALLRLAI 255
           + A  ++ +
Sbjct: 388 ENAKDKVMM 396


>gi|45643125|ref|NP_996671.1| nuclear valosin-containing protein-like isoform 2 [Homo sapiens]
 gi|2406580|gb|AAB70460.1| nuclear VCP-like protein NVLp.1 [Homo sapiens]
 gi|119590122|gb|EAW69716.1| nuclear VCP-like, isoform CRA_c [Homo sapiens]
          Length = 750

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 45/202 (22%), Positives = 68/202 (33%), Gaps = 16/202 (7%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--V 108
           VL  GPPG GKT LA  +A EL +     + P I           L  L          +
Sbjct: 195 VLLHGPPGCGKTLLAHAIAGELDLPILKVAAPEIVSGVSGESEQKLRELFEQAVSNAPCI 254

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +FIDEI  ++   E             L+              +R  +I AT R   L  
Sbjct: 255 IFIDEIDAITPKREVASKDMERRIVAQLLTCMDDLNNVAAT--ARVLVIGATNRPDSLDP 312

Query: 169 PLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
            L+   RF   I L   +    + I+Q   +   L      A +    +  TP   G  L
Sbjct: 313 ALRRAGRFDREICLGIPDEASRERILQTLCRKLRLPQ----AFDFCHLAHLTPGFVGADL 368

Query: 227 RRVRDFAEVAHAKTITREIADA 248
             +   A +     +  ++ + 
Sbjct: 369 MALCREAAMCAVNRVLMKLQEQ 390



 Score = 43.5 bits (101), Expect = 0.044,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 8/76 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL  GPPG GKT LA+ VA E G+NF S  GP +     G+    +  +  R       V
Sbjct: 512 VLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCV 571

Query: 109 LFIDEIHRLSIIVEEI 124
           +F DE+  L     + 
Sbjct: 572 IFFDEVDALCPRRSDR 587


>gi|313904288|ref|ZP_07837666.1| Sigma 54 interacting domain protein [Eubacterium cellulosolvens 6]
 gi|313470838|gb|EFR66162.1| Sigma 54 interacting domain protein [Eubacterium cellulosolvens 6]
          Length = 330

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/179 (20%), Positives = 63/179 (35%), Gaps = 22/179 (12%)

Query: 30  FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPV 89
             GQ +   +    IEA  A      H+L    PGL KTT A+ ++  +   F       
Sbjct: 30  VVGQQKLKYS---MIEAIIADG----HILIESVPGLAKTTAAKAISDAVNGKFSRIQCTP 82

Query: 90  IAKAGDL--AALLTNLEDR------DVL----FIDEIHRLSIIVEEILYPAMEDFQLDLM 137
                D+    +    E +       V      +DEI+R S   +  +  AM++ Q+   
Sbjct: 83  DLLPSDIIGTQIYNQAEGKFETKLGPVFANFVLLDEINRSSAKTQSAMLEAMQERQVT-- 140

Query: 138 VGEGPSARSVKINLSRFTLIAATTR-VGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
           +G         + +   T          LL+    DRF I   + +   ++   I+ R 
Sbjct: 141 IGGNTYRMPDDVFIVIATQNPVEQEGTYLLSEAQTDRFIIKETITYPTPDEETEILNRI 199


>gi|303273578|ref|XP_003056149.1| cell division cycle protein 48 [Micromonas pusilla CCMP1545]
 gi|226462233|gb|EEH59525.1| cell division cycle protein 48 [Micromonas pusilla CCMP1545]
          Length = 823

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 50/269 (18%), Positives = 91/269 (33%), Gaps = 41/269 (15%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------------VLFVGPPGLGKTTLA 71
            L+E  G  +     K   +  +     L H              +L  GPPG GKT +A
Sbjct: 202 RLDE-VGYDDVGGVRKQMAQIRELVELPLRHPLLFKTIGVKPPKGILLYGPPGSGKTLIA 260

Query: 72  QVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEE 123
           + VA E G  F   +GP I          +L       E     ++FIDEI  ++   E+
Sbjct: 261 RAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDEIDSIAPKREK 320

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
                 +      +V +  +      + +   ++ AT R   +   L+ RFG   R    
Sbjct: 321 -----TQGEVERRIVSQLLTLMDGMKSRAHVIVMGATNRRNSVDAALR-RFGRFDREIDI 374

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
            + D    ++   ++    +  +   ++   S+ T    G  L  +            T 
Sbjct: 375 GVPDETGRLE-VLRIHTKNMKLDDEVDLEKVSKETHGYVGADLAAL-----------CTE 422

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIA 272
                   ++ +  +  D +D   L  +A
Sbjct: 423 AALQCIREKMDVIDLEDDTIDAEILDSMA 451



 Score = 52.4 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 83/242 (34%), Gaps = 21/242 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVARE 77
           + E+  G       L+  ++      E            VLF GPPG GKT LA+ +A E
Sbjct: 480 SWEDIGGLESVKQELQETVQYPVEHPEKFEKFGMAPSKGVLFYGPPGCGKTLLAKAIANE 539

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
              NF S  GP +          ++  +          VLF DE+  ++         A 
Sbjct: 540 CQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIANQRGSSSGDA- 598

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                D ++ +  +      +     +I AT R  ++ + L    R    I +   + + 
Sbjct: 599 -GGAADRVLNQILTEMDGMGSKKTVFIIGATNRPDIIDSALMRPGRLDQLIYIPLPDEKS 657

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
             +I +   + + LA   +     +  +  +      + +R   FA +  +     E   
Sbjct: 658 RLSIFKANLRKSPLARDVDVDTLASFTNGFSGADITEICQRACKFA-IRESIERDIERER 716

Query: 248 AA 249
            A
Sbjct: 717 FA 718


>gi|147852346|emb|CAN80115.1| hypothetical protein VITISV_032527 [Vitis vinifera]
          Length = 676

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 61/274 (22%), Positives = 98/274 (35%), Gaps = 23/274 (8%)

Query: 26  TLEEFTG-----Q--VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G     Q   E    LK   + A   A     VL VGPPG GKT LA+ +A E 
Sbjct: 212 TFNDVAGVDEAKQDFQEIVEFLKTPEKFAAVGARIPKGVLLVGPPGTGKTLLAKAIAGEA 271

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG           A  +  L    ++    ++FIDEI  +       +    +
Sbjct: 272 GVPFFSLSGSEFIEMFVGIGASRVRDLFNKAKENSPCLVFIDEIDAVGRQRGTGIGGGND 331

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E           S   +IAAT R  +L + L    RF   + +   +I 
Sbjct: 332 EREQTLNQLLTEMDGFSGN----SGVIVIAATNRPEILDSALLRPGRFDRQVTVGLPDIR 387

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++  +    L      +         +      L+      A       IT +  
Sbjct: 388 GREEILKVHSNNKKLDKDVSLSIIAMRTPGFSGADLANLMNEAAILAGRRGKDKITLKEI 447

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV 280
           D ++ R+     G    D +   ++A +  G  V
Sbjct: 448 DDSIDRIVAGMEGTKMTDGKSKILVAYHEIGHAV 481


>gi|302668579|ref|YP_003833027.1| ATPase AAA family [Butyrivibrio proteoclasticus B316]
 gi|302397543|gb|ADL36445.1| ATPase AAA family [Butyrivibrio proteoclasticus B316]
          Length = 260

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 66/181 (36%), Gaps = 12/181 (6%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD-VL 109
            L  GP G GKTT A+ VA  L  +F   +   +          +L+ +   +  +D + 
Sbjct: 63  TLLYGPTGTGKTTFARFVAHSLDKDFAYVNFSSLMDGGFGNTERNLSKVFRYMTAQDCIF 122

Query: 110 FIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
            IDEI  ++         +  D    + +         K +  +  ++AAT  V  L   
Sbjct: 123 MIDEIDCIATSRT----ASTNDTLKSITIALMQELDYCKAHSPKAIILAATNVVDNLDPA 178

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMR-SRGTPRIAGRLLRR 228
           L  RF I   +     E+    V +      +    +   E   R SR T R+  + + R
Sbjct: 179 LLSRFSIKKEIPLLNNEEKLGFVCKYMNSLSVPYDLDQVREYIARNSRVTQRVMEQDIIR 238

Query: 229 V 229
            
Sbjct: 239 A 239


>gi|302788426|ref|XP_002975982.1| hypothetical protein SELMODRAFT_104715 [Selaginella moellendorffii]
 gi|300156258|gb|EFJ22887.1| hypothetical protein SELMODRAFT_104715 [Selaginella moellendorffii]
          Length = 580

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 54/214 (25%), Positives = 76/214 (35%), Gaps = 21/214 (9%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLED 105
           E +  +L  GPPG GK+ LA+ +A E  V F   S P +           L  L +    
Sbjct: 39  EHMKALLLHGPPGCGKSLLAEAIANEASVPFFKVSAPEVVSGTSGESEAKLRTLFSEAFR 98

Query: 106 --RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV--GEGPSARSV-------KINLSRF 154
               ++FIDE+  +    E             LMV   E   A             L R 
Sbjct: 99  VAPAIIFIDEVDAICSKRESAQREMERRIVTQLMVCMDEIDYAPRGSESEGGDSNKLRRL 158

Query: 155 TLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMR 214
            +IAAT R   L   L+ RF   I L   + +    I+   A    L        +    
Sbjct: 159 LVIAATNRPEALDQALRRRFDREICLKVPDEKARLQILTVLASKLRLD----GEFDFKAI 214

Query: 215 SRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +R TP   G  L+ +   A VA  + I  +   A
Sbjct: 215 ARRTPGFVGADLKVLTKEAGVAAIRRIAAKRKAA 248


>gi|300120406|emb|CBK19960.2| unnamed protein product [Blastocystis hominis]
          Length = 408

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 51/197 (25%), Positives = 74/197 (37%), Gaps = 22/197 (11%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA---------GDL-----AA 98
           A   +L  GPPG GKT LA+  A++    F   S  V+ +A          D        
Sbjct: 182 APKGILLYGPPGTGKTLLARACAKQTDAAFIKLSATVLDQAHIGEGSRIVRDCFSLAKKK 241

Query: 99  LLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIA 158
           +        ++FIDE+  + I             ++   + E  +A     + SR  +IA
Sbjct: 242 IEEKQAKGSIIFIDELDAIGIKR---SGDGEGSHEVQRTLLELLNAMDGFSSDSRIKVIA 298

Query: 159 ATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSR 216
           AT R  +L   L    RF   + L     E    I+Q  +K   L        EIA   R
Sbjct: 299 ATNRPDILDPALLRSGRFDRKVELPNPNEEARVKILQIHSKKLVLNRESVNFEEIA---R 355

Query: 217 GTPRIAGRLLRRVRDFA 233
            T   +G +LR V   A
Sbjct: 356 CTEDFSGAMLRAVCVEA 372


>gi|294155986|ref|YP_003560370.1| cell division protein FtsH [Mycoplasma crocodyli MP145]
 gi|291600426|gb|ADE19922.1| cell division protein FtsH [Mycoplasma crocodyli MP145]
          Length = 669

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 66/285 (23%), Positives = 109/285 (38%), Gaps = 33/285 (11%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKARAEALDH-------VLFVGPPGLGKTTLAQVVARE 77
           +   +  G  EA   +K  ++  K   +  D        +L  GPPG GKT LA+  A E
Sbjct: 195 KKFSDIAGNKEAIEEIKEIVDYLKNPKKYDDSGARMPKGILLGGPPGTGKTLLAKATAGE 254

Query: 78  LGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
             V F   S        V   A  +  ++T        ++FIDE+  +       +    
Sbjct: 255 ANVPFYFISASNFVEMYVGLGAKRVRQVITEARKNSPAIIFIDELDAIGRTRGSGIGGGH 314

Query: 130 EDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           ++ +  L  ++ E     + K  L      AAT R  +L   L    RF   I +   +I
Sbjct: 315 DEREQTLNQLLVEMDGITANKGLL----FFAATNRTDVLDPALIRPGRFDRTITVGMPDI 370

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV----AHAKTI 241
           ++ + I++  AK            E    ++ TP  +G  L  V + A +       K I
Sbjct: 371 KEREEILKLHAKGKRFD----PKIEFKNIAKRTPGYSGAQLENVINEATLLSVREETKFI 426

Query: 242 TREIADAALLRLAIDKMGFDQ-LDLRYLTMIARNFGGGP-VGIET 284
           T    D A+ R+        + +  + LT +A +  G   VGI+T
Sbjct: 427 TLPQIDEAIDRVMSGPAKKSRTITQKELTSVAYHEAGHAVVGIKT 471


>gi|254974298|ref|ZP_05270770.1| putative ATP-dependent peptidase [Clostridium difficile QCD-66c26]
 gi|255091695|ref|ZP_05321173.1| putative ATP-dependent peptidase [Clostridium difficile CIP 107932]
 gi|255099796|ref|ZP_05328773.1| putative ATP-dependent peptidase [Clostridium difficile QCD-63q42]
 gi|255305681|ref|ZP_05349853.1| putative ATP-dependent peptidase [Clostridium difficile ATCC 43255]
 gi|255313423|ref|ZP_05355006.1| putative ATP-dependent peptidase [Clostridium difficile QCD-76w55]
 gi|255516110|ref|ZP_05383786.1| putative ATP-dependent peptidase [Clostridium difficile QCD-97b34]
 gi|255649206|ref|ZP_05396108.1| putative ATP-dependent peptidase [Clostridium difficile QCD-37x79]
          Length = 465

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 59/264 (22%), Positives = 90/264 (34%), Gaps = 27/264 (10%)

Query: 8   LSRNVSQEDADISLLRPRT-LEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLF 59
           + R+   +D+  +   P+T   +  G  E    L   ++  K+        A+    VLF
Sbjct: 21  MERDNQTDDSLSTK--PKTTFRDVAGLDEVKEELFEIVDFMKSPQKYQKMGAKIPKGVLF 78

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFI 111
            GPPG GKT LA  VA E   +F + +G           A  +  L          ++FI
Sbjct: 79  YGPPGTGKTLLASAVAGETNSSFFNVTGSEFVEKYVGVGAKRVRTLFEKARKEAPSIIFI 138

Query: 112 DEIHRLSIIVEEILYPAME-DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           DEI  +       L    E D  L+ ++ E           S   +I AT R+ LL   L
Sbjct: 139 DEIDAVGAKR--HLESNNEKDQTLNQLLVEMDGFNKD----SNVLIIGATNRLDLLDEAL 192

Query: 171 QD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
               RF   I +          I++       +  +                    +   
Sbjct: 193 LRPGRFDRHIHIGAPNYHTRFEILKVHTDDKPIDKSVNLELLAKKTHGFNGAHLSNIANE 252

Query: 229 VRDFAEVAHAKTITREIADAALLR 252
              FA    ++ IT E  D AL R
Sbjct: 253 AAIFAVRDDSECITSEHFDKALER 276


>gi|254470770|ref|ZP_05084173.1| DNA polymerase III, tau subunit protein [Pseudovibrio sp. JE062]
 gi|211959912|gb|EEA95109.1| DNA polymerase III, tau subunit protein [Pseudovibrio sp. JE062]
          Length = 640

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 56/313 (17%), Positives = 91/313 (29%), Gaps = 65/313 (20%)

Query: 9   SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT 68
           S +           RP T ++  GQ      L+   E  +         +  G  G+GKT
Sbjct: 39  SSSDGAYRVLARKYRPSTFDDLYGQEPMVQTLQNAFETGRIAQAW----MLTGVRGVGKT 94

Query: 69  TLAQVVARELGVNF-----------------------------RSTSGPVIAKAGDLAAL 99
           T A+++AR L                                            GD+  +
Sbjct: 95  TTARILARGLNYEIPGEIDKPTIHLDKPGVHCQAIMEGRHVDVIEMDAASHTGIGDIREI 154

Query: 100 LTNLEDRD------VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSR 153
                 R       V  IDE+H LS      L   +E+                      
Sbjct: 155 TEAARYRPANARYKVYIIDEVHMLSNAAFNGLLKTLEE------------------PPEH 196

Query: 154 FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAM 213
              I ATT +  +   +  R      L   E   L ++++  +   G+ ++DEA   IA 
Sbjct: 197 VKFIFATTEIRKVPVTVLSRCQ-RFDLRRIESSTLVSLLREISGKEGIEISDEALTLIAR 255

Query: 214 RSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL---LRLAIDKMGFDQLDLRYLTM 270
              G+ R +  LL    D A    A  I  +     L    R  +  +    +     + 
Sbjct: 256 AGEGSARDSLSLL----DQAIAHGAGRIEADEVRQMLGLADRSRVIDLFEHVMRGDIASA 311

Query: 271 IARNFGGGPVGIE 283
           +        VG +
Sbjct: 312 LDELKAQYDVGAD 324


>gi|116207434|ref|XP_001229526.1| hypothetical protein CHGG_03010 [Chaetomium globosum CBS 148.51]
 gi|88183607|gb|EAQ91075.1| hypothetical protein CHGG_03010 [Chaetomium globosum CBS 148.51]
          Length = 821

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 76/229 (33%), Gaps = 28/229 (12%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLED 105
           +    VL  GPPG GKT +A+ VA E G  F   +GP I          +L       E 
Sbjct: 256 KPPRGVLLYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEK 315

Query: 106 RD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
               ++FIDEI  ++   ++             +V +  +        S   ++AAT R 
Sbjct: 316 NSPAIIFIDEIDSIAPKRDK-----TNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRP 370

Query: 164 GLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVT---DEAACEIAMRSRGT 218
             +   L+   RF   + +   +      I+Q   K   L      ++ A E        
Sbjct: 371 NSIDPALRRFGRFDREVDIGIPDPTGRLEILQIHTKNMKLGDDVDLEQIAAETHGYVGSD 430

Query: 219 PRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRY 267
                     V      A  + I  ++    L    ID    D L +  
Sbjct: 431 ----------VAALCSEAAMQQIREKMDLIDLDEDTIDAEVLDSLGVTM 469



 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/161 (23%), Positives = 57/161 (35%), Gaps = 18/161 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVARE 77
             E+  G       LK  ++      E            VLF GPPG GKT LA+ VA E
Sbjct: 496 RWEDIGGLETVKQELKESVQYPVDHPEKFLKFGLSPSRGVLFYGPPGTGKTMLAKAVANE 555

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
              NF S  GP +          ++  +          V+F+DE+  ++      +  A 
Sbjct: 556 CAANFISVKGPELLSMWFGESESNIRDIFDKARAAAPCVVFLDELDSIAKARGGSVGDA- 614

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
                D +V +  +      +     +I AT R   L   L
Sbjct: 615 -GGASDRVVNQLLTEMDGMTSKKNVFVIGATNRPEQLDPAL 654


>gi|327300188|ref|XP_003234787.1| cell division control protein Cdc48 [Trichophyton rubrum CBS
           118892]
 gi|326463681|gb|EGD89134.1| cell division control protein Cdc48 [Trichophyton rubrum CBS
           118892]
          Length = 814

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 53/257 (20%), Positives = 87/257 (33%), Gaps = 23/257 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVARE 77
             ++  G  E    L   ++      E            VLF GPPG GKT LA+ VA E
Sbjct: 491 RWDDIGGLEEVKRELIESVQYPVDHPEKFLKFGLSPSKGVLFYGPPGTGKTLLAKAVANE 550

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
              NF S  GP +          ++  +          V+F+DE+  ++         A 
Sbjct: 551 CAANFISVKGPELLSMWFGESESNIRDIFDKARAAAPCVVFLDELDSIAKSRGASSGDA- 609

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                D +V +  +      +     +I AT R   L N L    R    + +      +
Sbjct: 610 -GGASDRVVNQLLTEMDGMTSKKNVFVIGATNRPEQLDNALCRPGRLDTLVYVPLPNEPE 668

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA---EVAHAKTITRE 244
              I++   + T +A   + A   +     +    G + +R    A    +A A   T+E
Sbjct: 669 RTAILKAQLRKTPVASDVDLAYIASKTHGFSGADLGFVTQRAVKLAIKESIATAIRRTKE 728

Query: 245 IADAALLRLAIDKMGFD 261
              A    +  D    D
Sbjct: 729 REAAGEDAMEDDIDDED 745



 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 43/218 (19%), Positives = 73/218 (33%), Gaps = 17/218 (7%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLED 105
           +    +L  GPPG GKT +A+ VA E G  F   +GP I          +L       E 
Sbjct: 251 KPPRGILMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEK 310

Query: 106 RD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
               ++FIDEI  ++   E+             +V +  +        S   ++AAT R 
Sbjct: 311 NSPAIIFIDEIDSIAPKREK-----TNGEVERRVVSQLLTLMDGMKARSNIVVMAATNRP 365

Query: 164 GLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRI 221
             +   L+   RF   + +   +      I+Q   K   L    +     A         
Sbjct: 366 NSIDPALRRFGRFDREVDIGIPDPTGRLEILQIHTKNMKLGEDVDLESIAAETHGYVGSD 425

Query: 222 AGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259
              L        +    K    ++ +  +    +D +G
Sbjct: 426 IASLCSEAAM--QQIREKMDLIDLDEDTIDAEVLDSLG 461


>gi|300214188|gb|ADJ78604.1| ATPases of the AAA+ class [Lactobacillus salivarius CECT 5713]
          Length = 535

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 73/203 (35%), Gaps = 37/203 (18%)

Query: 55  DHVLFVGPPGLGKTTLAQVVAR--------ELGVNFRSTSGPVIAK-AGDLAALLTNLED 105
            H++F GPPG GKTT+A++VAR        E      +    +  K  GDL+  +    D
Sbjct: 311 HHMIFEGPPGTGKTTVARIVARLFYALGILENTTVVETKRNELEGKWVGDLSGKINEKVD 370

Query: 106 ---RDVLFIDEIHRL----------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152
                VLFIDE H+L            +++  +     D +  + +  G +    +    
Sbjct: 371 SALGGVLFIDEAHQLYNKEDPYDKGKQVIQAFVPRLENDGEKFIAIIAGYTKEMEEFL-- 428

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIA 212
                            L  RF   I    Y+ + +  IV    K   +   ++    +A
Sbjct: 429 ------------KFDPGLASRFQHKIIFESYKPQVVAQIVVNILKKNKIEFNEKYVKAVA 476

Query: 213 MRS-RGTPRIAGRLLRRVRDFAE 234
           +      P       R  R++A+
Sbjct: 477 INLYDQIPDDKKSNARWARNYAQ 499


>gi|261749391|ref|YP_003257076.1| ATP-dependent protease [Blattabacterium sp. (Periplaneta americana)
           str. BPLAN]
 gi|261497483|gb|ACX83933.1| ATP-dependent protease [Blattabacterium sp. (Periplaneta americana)
           str. BPLAN]
          Length = 800

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 60/322 (18%), Positives = 110/322 (34%), Gaps = 66/322 (20%)

Query: 32  GQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           G  +    +  ++   K R +    +L F GPPG+GKT+L + +A  L   +   S   +
Sbjct: 355 GLEKVKERIIEYLAVLKLRGDMRSPILCFYGPPGVGKTSLGRSIATALKRKYVRISLGGL 414

Query: 91  AKAGDLAALLTNL----------------EDRDVLFIDEIHRL--------SIIVEEILY 126
               ++                           V  +DEI ++        S  + E+L 
Sbjct: 415 HDESEIRGHRRTYIGAMPGRLLQSIRKVGTSNPVFVLDEIDKMGLGANGDPSSAMLEVLD 474

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           P       D  +  G        +LS+   IA    +  +   L DR  + I +N Y +E
Sbjct: 475 PEQNTSFYDNFLEMGY-------DLSKVLFIATANSLSNIQPALIDRMEV-IEMNGYTVE 526

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           +   IV++   +    + +          +    +  + + +V +      +   T E  
Sbjct: 527 EKTKIVKK--HILPKQLKENGLK------KSDLILGTQQIEKVIESYT-RESGLRTLEKH 577

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306
            A L R A   +    +D +Y+  +          IE I   L  P D   D  E     
Sbjct: 578 MAKLARYAAKHIA---MDRKYVKRL---------SIEKIEEILGIPND--PDRYEE---- 619

Query: 307 QGFIQRTPRGRLLMPIAWQHLG 328
                + P   ++  +AW + G
Sbjct: 620 ----NKVP--GVVTGLAWTNFG 635


>gi|255729690|ref|XP_002549770.1| cell division control protein 48 [Candida tropicalis MYA-3404]
 gi|240132839|gb|EER32396.1| cell division control protein 48 [Candida tropicalis MYA-3404]
          Length = 826

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 71/195 (36%), Gaps = 23/195 (11%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHV--------LFVGPPGLGKTTLAQVVARELG 79
           ++  G  +  + ++  +E      +    +        L  GPPG GKT +A+ VA E G
Sbjct: 215 DDIGGCKKQMAQIRELVELPLRHPQLFKSIGIKPPKGILMYGPPGTGKTIMARAVANETG 274

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAMED 131
             F   +GP I          +L       E     ++FIDEI  ++   ++        
Sbjct: 275 AFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPSIIFIDEIDSIAPKRDK-----TNG 329

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
                +V +  +        S   +IAAT R   +   L+   RF   + +   + E   
Sbjct: 330 EVERRVVSQLLTLMDGMKARSNVVVIAATNRPNSIDPALRRFGRFDREVDIGVPDAEGRL 389

Query: 190 TIVQRGAKLTGLAVT 204
            I++   K   LA  
Sbjct: 390 EILRIHTKNMKLADD 404



 Score = 48.5 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 43/195 (22%), Positives = 69/195 (35%), Gaps = 20/195 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
           T ++  G     + LK  +E      +            VLF GPPG GKT LA+ VA E
Sbjct: 486 TWDDIGGLDNIKNELKETVEYPVLHPDQYQKFGLAPTKGVLFFGPPGTGKTLLAKAVATE 545

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAM 129
           +  NF S  GP +          ++  +          V+F+DE+  ++         A 
Sbjct: 546 VSANFISVKGPELLSMWYGESESNIRDIFDKARAAAPTVVFLDELDSIAKARGGSHGDA- 604

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                D +V +  +            +I AT R   +   L    R    I +   +   
Sbjct: 605 -GGASDRVVNQLLTEMDGMNAKKNVFVIGATNRPDQIDPALLRPGRLDQLIYVPLPDEPA 663

Query: 188 LKTIVQRGAKLTGLA 202
             +I+Q   + T L 
Sbjct: 664 RLSILQAQLRNTPLE 678


>gi|225873635|ref|YP_002755094.1| ATP-dependent metalloprotease FtsH [Acidobacterium capsulatum ATCC
           51196]
 gi|310943113|sp|C1F8X6|FTSH_ACIC5 RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|225793772|gb|ACO33862.1| ATP-dependent metalloprotease FtsH [Acidobacterium capsulatum ATCC
           51196]
          Length = 639

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 59/248 (23%), Positives = 92/248 (37%), Gaps = 27/248 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAA-------KARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  EA   LK  IE         K        VL VGPPG GKT LA+ VA E 
Sbjct: 154 TFKDVAGVDEAKEELKEIIEFLREAQKFQKLGGRIPKGVLLVGPPGTGKTLLARAVAGEA 213

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  L    +     ++FIDEI  +       L    +
Sbjct: 214 NVPFFSISGSDFVEMFVGVGASRVRDLFEQGKKNAPCIIFIDEIDAVGRHRGAGLGGGHD 273

Query: 131 DFQLD----LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
           + +      L+  +G  A    I       +AAT R  +L   L    RF   + +   +
Sbjct: 274 EREQTLNQLLVEMDGFEANDGVIL------VAATNRPDVLDPALLRPGRFDRRVVVGRPD 327

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +   + +++  AK   LA   +           +      ++      A  A+ K +T +
Sbjct: 328 VRGREEVLRVHAKKVPLAEDVDLRVLARGTPGFSGADLANMVNEGALSAARANRKVVTMQ 387

Query: 245 IADAALLR 252
             ++A  +
Sbjct: 388 DFESAKDK 395


>gi|156547617|ref|XP_001603638.1| PREDICTED: similar to ATP-dependent Lon protease, putative [Nasonia
           vitripennis]
          Length = 979

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/276 (16%), Positives = 91/276 (32%), Gaps = 43/276 (15%)

Query: 32  GQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           G  +    +  FI  ++ +      +L F GPPG+GKT++A+ ++R L   +   S   +
Sbjct: 497 GMEDIKKRILEFIAVSQLKGSTQGKILCFHGPPGVGKTSIARSISRALNREYFRFSVGGM 556

Query: 91  AKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE--------EILY 126
               ++                        +  ++ IDE+ ++    +        E+L 
Sbjct: 557 TDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLVLIDEVDKIGKGHQGDPASALLEMLD 616

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           P      LD           V ++LS+   I     +  +  PL+DR  +     +   E
Sbjct: 617 PEQNANFLD-------HYLDVAVDLSKVLFICTANVIDTIPEPLRDRMEMIDMSGYVAEE 669

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH-AKTITREI 245
            L       AK   +  + + +       +        L++     + V +  K I +  
Sbjct: 670 KLA-----IAKQYLVPQSMKDSGLTEDHIKIEDNALVTLIKSYCRESGVRNLQKHIEKVH 724

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVG 281
              A   +  +    D            +F G PV 
Sbjct: 725 RKVAFKVVKKEAERLDVTAENL-----TDFVGKPVF 755


>gi|146101518|ref|XP_001469135.1| replication factor C, subunit 3 [Leishmania infantum]
 gi|134073504|emb|CAM72235.1| putative replication factor C, subunit 3 [Leishmania infantum
           JPCM5]
 gi|322503146|emb|CBZ38230.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 364

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 61/206 (29%), Gaps = 38/206 (18%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP TLE      +  S L+  +++       + H+L  GPPG GKTT  +  A 
Sbjct: 18  PWVEKYRPSTLESVVAHEDILSTLRHLMDSG-----NMPHLLLYGPPGTGKTTTIKACAY 72

Query: 77  ELGVNFRSTSGPVIAKAGDLAAL------------------------------LTNLEDR 106
            L    R  +  +   A D   +                                     
Sbjct: 73  YLYGKDRVRANVLEMNASDDRGIDVVRQQTREFASTSSIFSMMGSGSSTGGGSGGPAAKF 132

Query: 107 DVLFIDEIHRLSIIVEEILYPAMEDFQ--LDLMVGEGPSARSVKINLSRFTLIAATTRVG 164
            ++ +DE  ++S   +  L   +E +   +   +      + +    SR T         
Sbjct: 133 KLVILDEADQMSHDAQAALRRVIEKYTRNVRFCILCNHINKIIPALQSRCTRFRFAPVKK 192

Query: 165 LLTNPLQDRFGIPIRLNFYEIEDLKT 190
               P + RF        Y  + L  
Sbjct: 193 SAMMP-RLRFVAEQEGVKYTTDGLAA 217


>gi|118577019|ref|YP_876762.1| AAA ATPase [Cenarchaeum symbiosum A]
 gi|118195540|gb|ABK78458.1| AAA ATPase [Cenarchaeum symbiosum A]
          Length = 709

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/155 (27%), Positives = 61/155 (39%), Gaps = 15/155 (9%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLT 101
           K   +A   VL  GPPG GKT LA+ VA E   NF    GP I           L  +  
Sbjct: 205 KIGVDAPRGVLLYGPPGTGKTLLAKAVAGETNANFSYIGGPEIMGKYYGESEERLREMFR 264

Query: 102 NLEDR--DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA 159
             E+    ++FIDEI  ++   +E+     +     L+       R  K       +IAA
Sbjct: 265 EAEENAPSIIFIDEIDSIAPKRDEVSGELEKRIVSQLLSLMDGMTRRGK-----VVVIAA 319

Query: 160 TTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIV 192
           T R   +   L+   RF   I +     E  + I+
Sbjct: 320 TNRPDSIDPALRRPGRFDREIEIGIPGREGREQIL 354



 Score = 52.8 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 46/252 (18%), Positives = 86/252 (34%), Gaps = 24/252 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
           + ++  G       L++ IE      EA+ +        ++  GPPG GKT +A+ VAR 
Sbjct: 448 SWDDVGGLDGLKEELRMAIEWPVKHKEAVKYAGVSPPKGLMLHGPPGTGKTLIAKAVARM 507

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
              NF S  GP +           +  +          ++F DE+  L           +
Sbjct: 508 TESNFISVKGPELLSKWVGESEKGVREIFRKARQAAPCIIFFDEVDALVPRRGGGSTSHV 567

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            +  +  ++ E      +   L    +I AT R+ ++   L    RF   + +   +   
Sbjct: 568 TENVVSQILTEIDGLEELHGVL----IIGATNRLDIVDPALLRPGRFDRVVEVPRPDAGA 623

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            + I     K   L  T + A   +     T         R    A   H ++ + ++  
Sbjct: 624 REKIFAIHTKNKPLDGTVDLAALASSSEGLTGAEIESAANRAATEALRRHVESGSDDV-- 681

Query: 248 AALLRLAIDKMG 259
             +     D +G
Sbjct: 682 KGIKITQEDLLG 693


>gi|187924838|ref|YP_001896480.1| ATP-dependent metalloprotease FtsH [Burkholderia phytofirmans PsJN]
 gi|187716032|gb|ACD17256.1| ATP-dependent metalloprotease FtsH [Burkholderia phytofirmans PsJN]
          Length = 629

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 51/249 (20%), Positives = 89/249 (35%), Gaps = 23/249 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAA-------KARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G  EA   +   ++         K        VL VGPPG GKT LA+ +A E 
Sbjct: 152 NFTDVAGCDEAKEEVSELVDFLRDPQKFQKLGGRIPRGVLLVGPPGTGKTLLARAIAGEA 211

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  +    +     ++FIDEI  +       +    +
Sbjct: 212 KVPFFSISGSDFVEMFVGVGAARVRDMFEQAKKHAPCIVFIDEIDAVGRHRGAGMGGGND 271

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  M+ E     +     S   +IAAT R  +L   L    RF   + +   +I 
Sbjct: 272 EREQTLNQMLVEMDGFEAN----SGVIVIAATNRSDVLDKALLRPGRFDRQVYVGLPDIR 327

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++   +   ++   +AA         +      L+     FA     + +     
Sbjct: 328 GREHIMKVHLRKVPISNDVDAAVIARGTPGFSGADLANLVNEAALFAARRGKRIVEMNDF 387

Query: 247 DAALLRLAI 255
           + A  ++ +
Sbjct: 388 EDAKDKIFM 396


>gi|110668618|ref|YP_658429.1| AAA-type ATPase (transitional ATPase homolog) [Haloquadratum
           walsbyi DSM 16790]
 gi|109626365|emb|CAJ52824.1| AAA-type ATPase (transitional ATPase homolog) [Haloquadratum
           walsbyi DSM 16790]
          Length = 753

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 56/245 (22%), Positives = 85/245 (34%), Gaps = 33/245 (13%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
           T E+  G       ++  IE      E            VL  GPPG GKT +A+ VA E
Sbjct: 187 TYEDIGGLERELEQVREMIELPMRHPELFQRLGIEPPKGVLLHGPPGTGKTLIAKAVANE 246

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM 129
           +  +F + SGP I           L  +    E+    ++F+DEI  ++    E      
Sbjct: 247 IDASFHTISGPEIMSKYYGESEEQLREIFEEAEEEAPSIVFVDEIDSIAPKRGEAGGDVE 306

Query: 130 ED---FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
                  L LM G       V I         AT RV  L   L+   RF   I +   +
Sbjct: 307 RRVVAQLLSLMDGLDERGEVVVI--------GATNRVDALDPALRRGGRFDREIEVGVPD 358

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            E  K I+Q    +    +    +  +   +  T    G  +  +   A +   + I  E
Sbjct: 359 REGRKEILQ----VHTRNMPLSDSVNLDEYADNTHGFVGADIESLAKEAAMNALRRIRPE 414

Query: 245 IADAA 249
           +   A
Sbjct: 415 LDLEA 419



 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 8/73 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DV 108
           VL  GPPG GKT LA+ VA E   NF S  GP +           +  +     +    V
Sbjct: 499 VLMYGPPGTGKTMLAKAVANESESNFISVKGPELLDKYVGESEKGVRDIFKKARENAPTV 558

Query: 109 LFIDEIHRLSIIV 121
           +F DEI  ++   
Sbjct: 559 VFFDEIDSIATER 571


>gi|108758871|ref|YP_630990.1| AAA family ATPase [Myxococcus xanthus DK 1622]
 gi|108462751|gb|ABF87936.1| ATPase, AAA family [Myxococcus xanthus DK 1622]
          Length = 711

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 79/217 (36%), Gaps = 28/217 (12%)

Query: 8   LSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAA--------KARAEALDHVLF 59
           +++   +E       R  + E+  G       ++  +E          +   +A   VL 
Sbjct: 166 VAKAPEKEKVTHERARAVSYEDVGGLKRELGRIREIVELPLRYPEVFERLGIDAPKGVLL 225

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFI 111
            GPPG GKT +A+ VA E    F + +GP I           L  +    + R   ++F+
Sbjct: 226 YGPPGCGKTLIARAVAHETAAAFFTITGPEIMHKFYGESEAHLRQIFDEAQRRAPAIIFV 285

Query: 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
           DEI  ++   E      ++      +V +  S            ++AAT    +L   L+
Sbjct: 286 DEIDAIAPRREN-----VQGEVEKRVVAQLLSLMDGLAQRRHVIVLAATNIPNVLDPALR 340

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAA 208
                  R   ++ E   +I  R A+   LA+     
Sbjct: 341 -------RPGRFDREIAISIPDRTARKEILAIHSRGM 370



 Score = 47.8 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 43/176 (24%), Positives = 70/176 (39%), Gaps = 13/176 (7%)

Query: 39  NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDL 96
            L+   E A+A+      VL  GPPG GKT +A+  A E  VNF S  GP +     G+ 
Sbjct: 478 PLRYPEEFARAKVRPPKGVLLSGPPGCGKTLMAKAAAHESQVNFISVKGPALLSKFVGES 537

Query: 97  AALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN 150
              +     +       ++F DEI  L           M++   + +V +  +       
Sbjct: 538 ERGVRETFQKARQAAPCIIFFDEIDSLVPTRSAG---GMDERVTERVVSQFLAEMDGIEE 594

Query: 151 LSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVT 204
           L+   ++AAT R  LL   L    RF + + +   + E  + I Q   +   +   
Sbjct: 595 LTGVLVLAATNRADLLDPALLRPGRFDLLVDVPLPDREARRDIFQVHLRDKPVEKD 650


>gi|42779144|ref|NP_976391.1| cell division protein FtsH [Bacillus cereus ATCC 10987]
 gi|42735059|gb|AAS38999.1| cell division protein FtsH [Bacillus cereus ATCC 10987]
          Length = 633

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 62/248 (25%), Positives = 88/248 (35%), Gaps = 27/248 (10%)

Query: 26  TLEEFTG-----QV--EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G     Q   E    LK   + A+  A     VL VGPPG GKT LA+ VA E 
Sbjct: 160 RFRDVAGADEEKQELVEVVEFLKDPRKFAEVGARIPKGVLLVGPPGTGKTLLARAVAGEA 219

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG       V   A  +  L  N +     ++FIDEI  +       L    +
Sbjct: 220 GVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCIIFIDEIDAVGRQRGAGLGGGHD 279

Query: 131 DFQLD----LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
           + +      L+  +G  A    I      +IAAT R  +L   L    RF   I ++  +
Sbjct: 280 EREQTLNQLLVEMDGFGANEGII------IIAATNRPDILDPALLRPGRFDRQITVDRPD 333

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +   + +++  A+   L                +      LL      A     K I   
Sbjct: 334 VNGREAVLKVHARNKPLDENINLRAIATRTPGFSGADLENLLNEAALVAARQDKKKIDMS 393

Query: 245 IADAALLR 252
             D A  R
Sbjct: 394 DIDEATDR 401


>gi|21227358|ref|NP_633280.1| CdcH protein [Methanosarcina mazei Go1]
 gi|20905716|gb|AAM30952.1| CdcH protein [Methanosarcina mazei Go1]
          Length = 751

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/192 (22%), Positives = 69/192 (35%), Gaps = 14/192 (7%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR--- 106
           +    VL  GPPG GKT LA+ VA E   NF S  GP +     G+    +     +   
Sbjct: 480 KPPRGVLLFGPPGTGKTLLAKAVANESEANFISIKGPELLSKYVGESERAIRETFRKAKQ 539

Query: 107 ---DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
               V+F DEI  ++     +    + +  +  ++ E          L    ++AAT R 
Sbjct: 540 AAPTVIFFDEIDSIAPQRSSVSDTHVSERVVSQILTELDGIE----ELKDVIIVAATNRP 595

Query: 164 GLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRI 221
            ++   L    RF   I +     E  + I +  AK   LA   + +    M        
Sbjct: 596 DMVDPALLRPGRFDRLIYIKPPGKEGREKIFEIHAKEKPLAEDVKLSELAEMTEGYVGAD 655

Query: 222 AGRLLRRVRDFA 233
              + R     A
Sbjct: 656 IEGICREAAMLA 667



 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/84 (34%), Positives = 37/84 (44%), Gaps = 8/84 (9%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLT 101
           K   E    VL  GPPG GKT +A+ VA E   NF + SGP I           L  +  
Sbjct: 204 KLGVEPPKGVLLHGPPGTGKTMIAKAVASETDANFITISGPEIVSKYYGESEQKLREIFE 263

Query: 102 NLED--RDVLFIDEIHRLSIIVEE 123
             E     ++FIDEI  ++    E
Sbjct: 264 EAEKDAPSIIFIDEIDSIAPKRGE 287


>gi|124267720|ref|YP_001021724.1| DNA-directed DNA polymerase [Methylibium petroleiphilum PM1]
 gi|124260495|gb|ABM95489.1| DNA-directed DNA polymerase [Methylibium petroleiphilum PM1]
          Length = 614

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 50/322 (15%), Positives = 92/322 (28%), Gaps = 79/322 (24%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARE 77
               RPR   E  GQ      L   + + +     L H  LF G  G+GKTT+++++A+ 
Sbjct: 7   ARKYRPRHFGEMVGQEHVVQALANALTSQR-----LHHAYLFTGTRGVGKTTVSRILAKS 61

Query: 78  LGV-----------------------------NFRSTSGPVIAKAGDLAALLTN------ 102
           L                               ++            +++ LL        
Sbjct: 62  LNCTGPDGQGGITAQPCGVCPACRDIDAGRFVDYTELDAASNRGVDEISQLLEQSAYKPV 121

Query: 103 LEDRDVLFIDEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAAT 160
           +    V  IDE+H LS      +   +E+    L  ++      +     LSR       
Sbjct: 122 VGRFKVFMIDEVHMLSSTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNLR 181

Query: 161 TRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPR 220
                                    E +   +++     G++    A   +A  + G+ R
Sbjct: 182 PMA---------------------PETVLAHLEQVLAAEGISAEPGALRLLARGAHGSMR 220

Query: 221 IAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGP- 279
            A  L     D A    A T+        +  +             ++  +      G  
Sbjct: 221 DALSL----TDQAIAFGAGTLQEAGVRQMIGAVG----------RSHVYALIDALAAGDG 266

Query: 280 VGIETISAGLSEPRDAIEDLIE 301
            G+   +  L     + E  +E
Sbjct: 267 AGVVATADALRAEGLSAEGALE 288


>gi|332981202|ref|YP_004462643.1| membrane protease FtsH catalytic subunit [Mahella australiensis
           50-1 BON]
 gi|332698880|gb|AEE95821.1| membrane protease FtsH catalytic subunit [Mahella australiensis
           50-1 BON]
          Length = 602

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 59/246 (23%), Positives = 93/246 (37%), Gaps = 23/246 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEAL-------DHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  E    LK  +E  K+  + L         VL +GPPG GKT LA+ VA E 
Sbjct: 158 TFNDVAGADEEKQELKEVVEFLKSPRKFLELGARIPKGVLLIGPPGTGKTLLAKAVAGEA 217

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG       V   A  +  L    +     ++FIDEI  +       L    +
Sbjct: 218 GVPFFSISGSDFVEMFVGVGAARVRDLFDQAKKNSPCIVFIDEIDAVGRHRGAGLGGGHD 277

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E       +       ++AAT R  +L   L    RF   + +   +++
Sbjct: 278 EREQTLNQLLVEMDGFSDNEG----IIVMAATNRPDILDPALLRPGRFDRHVVVGAPDVK 333

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++  +K   LA   +           T      +L      A     K IT +  
Sbjct: 334 GREEIMKVHSKGKPLAPDVDLKVLAKRTPGFTGADIENMLNEAAILAARNGKKIITMQEL 393

Query: 247 DAALLR 252
           + A+ R
Sbjct: 394 EEAITR 399


>gi|326473474|gb|EGD97483.1| cell division control protein Cdc48 [Trichophyton tonsurans CBS
           112818]
 gi|326480303|gb|EGE04313.1| cell division cycle protein 48 [Trichophyton equinum CBS 127.97]
          Length = 814

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 53/257 (20%), Positives = 87/257 (33%), Gaps = 23/257 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVARE 77
             ++  G  E    L   ++      E            VLF GPPG GKT LA+ VA E
Sbjct: 491 RWDDIGGLEEVKRELIESVQYPVDHPEKFLKFGLSPSKGVLFYGPPGTGKTLLAKAVANE 550

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
              NF S  GP +          ++  +          V+F+DE+  ++         A 
Sbjct: 551 CAANFISVKGPELLSMWFGESESNIRDIFDKARAAAPCVVFLDELDSIAKSRGASSGDA- 609

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                D +V +  +      +     +I AT R   L N L    R    + +      +
Sbjct: 610 -GGASDRVVNQLLTEMDGMTSKKNVFVIGATNRPEQLDNALCRPGRLDTLVYVPLPNEPE 668

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA---EVAHAKTITRE 244
              I++   + T +A   + A   +     +    G + +R    A    +A A   T+E
Sbjct: 669 RTAILKAQLRKTPVASDVDLAYIASKTHGFSGADLGFVTQRAVKLAIKESIATAIRRTKE 728

Query: 245 IADAALLRLAIDKMGFD 261
              A    +  D    D
Sbjct: 729 REAAGEDAMEDDIDDED 745



 Score = 53.5 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 43/218 (19%), Positives = 73/218 (33%), Gaps = 17/218 (7%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLED 105
           +    +L  GPPG GKT +A+ VA E G  F   +GP I          +L       E 
Sbjct: 251 KPPRGILMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEK 310

Query: 106 RD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
               ++FIDEI  ++   E+             +V +  +        S   ++AAT R 
Sbjct: 311 NSPAIIFIDEIDSIAPKREK-----TNGEVERRVVSQLLTLMDGMKARSNIVVMAATNRP 365

Query: 164 GLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRI 221
             +   L+   RF   + +   +      I+Q   K   L    +     A         
Sbjct: 366 NSIDPALRRFGRFDREVDIGIPDPTGRLEILQIHTKNMKLGEDVDLESIAAETHGYVGSD 425

Query: 222 AGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259
              L        +    K    ++ +  +    +D +G
Sbjct: 426 IASLCSEAAM--QQIREKMDLIDLDEDTIDAEVLDSLG 461


>gi|320335488|ref|YP_004172199.1| ATP-dependent metalloprotease FtsH [Deinococcus maricopensis DSM
           21211]
 gi|319756777|gb|ADV68534.1| ATP-dependent metalloprotease FtsH [Deinococcus maricopensis DSM
           21211]
          Length = 623

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 60/250 (24%), Positives = 93/250 (37%), Gaps = 31/250 (12%)

Query: 26  TLEEFTGQVEACSNLKVFI------EAAKARAEALDH-VLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  EA ++L   +      E        + H +L VGPPG GKT LA+ VA E 
Sbjct: 167 TFADVAGCDEAKTDLTEVVDFLRHPERYHQLGARIPHGLLLVGPPGSGKTLLAKAVAGEA 226

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV + S SG       V   A  +  L    + +   ++FIDEI  +       L    +
Sbjct: 227 GVPYFSISGSDFVEMFVGVGAARVRDLFEQAKKQTPCIVFIDEIDAVGRKRGTGLNGGND 286

Query: 131 DFQLDL------MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNF 182
           + +  L      M G G +   +        ++AAT R  +L   L    RF   + ++ 
Sbjct: 287 EREQTLNQLLVEMDGFGTTHDVI--------VLAATNRPDVLDAALLRPGRFDRQVVVDA 338

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            ++   + I++  A+   L  T + A                LL      A     +TI 
Sbjct: 339 PDVRGREMILKIHARKKPLDPTVDLALVARRTPGMVGADLENLLNEAALQAARNGRETIL 398

Query: 243 REIADAALLR 252
               D A  R
Sbjct: 399 MADIDEAADR 408


>gi|281339358|gb|EFB14942.1| hypothetical protein PANDA_013685 [Ailuropoda melanoleuca]
          Length = 1378

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/186 (22%), Positives = 71/186 (38%), Gaps = 26/186 (13%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTS------GPVIAK-AGDLAALL 100
           K R +     LF GPPG GKT +A+ +A E     +  +         ++K  G+    L
Sbjct: 453 KFRIQPPRGCLFYGPPGTGKTLVARALANECSQGDKRVAFFMRKGADCLSKWVGESERQL 512

Query: 101 TNLEDR------DVLFIDEIHRLSII---VEEILYPAMEDFQLDLMVGEGPSARSVKINL 151
             L D+       ++F DEI  L+ +    ++ ++ ++    L LM G       V I  
Sbjct: 513 RLLFDQAYQMRPSIIFFDEIDGLAPVRSSRQDQIHSSIVSTLLALMDGLDSRGEIVVI-- 570

Query: 152 SRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAAC 209
                  AT R+  +   L+   RF      +  + +  K I++   +       D    
Sbjct: 571 ------GATNRLDSIDPALRRPGRFDREFLFSLPDKDARKEILKIHTRDWNPKPLDIFLE 624

Query: 210 EIAMRS 215
           E+A   
Sbjct: 625 ELAENC 630


>gi|253577518|ref|ZP_04854831.1| vesicle-fusing ATPase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843058|gb|EES71093.1| vesicle-fusing ATPase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 500

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 54/258 (20%), Positives = 94/258 (36%), Gaps = 32/258 (12%)

Query: 26  TLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T E+  GQ  A   L+  +       E +K     +  +L  GPPG GKT LA+  A   
Sbjct: 69  TFEQIGGQESAKQELREALDFMVRHEEISKFGIRPIKGILLTGPPGTGKTLLAKAAAHYT 128

Query: 79  GVNFRSTSGPVI---------AKAGDL-----AALLTNLEDRDVLFIDEIHRLSIIV--- 121
              F + SG            ++  DL            ++  ++FIDEI  +       
Sbjct: 129 NAVFVAASGSEFVEMYVGVGASRIRDLFKEARTRAAKENKENAIIFIDEIEVIGGKREGG 188

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIR 179
           ++  Y    +  L  M G   S      +  R  LIAAT R  +L + L    RF   I+
Sbjct: 189 QQREYDQTLNQLLTEMDGIYTS------DTPRILLIAATNRKEMLDSALLRPGRFDRHIQ 242

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           ++  + +  + I++  A    L    +           +      ++     +A      
Sbjct: 243 VDLPDKKGRRHILELHAANKPLREDVDLDKIAEESFGFSGAQLESVMNEAAIYAMRDGVD 302

Query: 240 TITREIADAALLRLAIDK 257
            IT+E    A+ ++ + +
Sbjct: 303 QITQEHLSVAIDKVLMGE 320


>gi|6807907|emb|CAB70717.1| hypothetical protein [Homo sapiens]
          Length = 431

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/235 (19%), Positives = 84/235 (35%), Gaps = 34/235 (14%)

Query: 2   MDREGLLSRNVSQED-------ADISLLR------PR-TLEEFTGQVEACSNLKVFIEAA 47
           +D E + S  V+ +D       ++ S LR      P+ T E+  G  +    L+  ++  
Sbjct: 62  IDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYP 121

Query: 48  KARAEAL--------DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKA 93
               +            VLF GPPG GKT LA+ +A E   NF S  GP +         
Sbjct: 122 VEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESE 181

Query: 94  GDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINL 151
            ++  +          VLF DE+  ++                D ++ +  +        
Sbjct: 182 ANVREIFDKARQAAPCVLFFDELDSIAKARGGN--IGDGGGAADRVINQILTEMDGMSTK 239

Query: 152 SRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVT 204
               +I AT R  ++   +    R    I +   + +    I++   + + +A  
Sbjct: 240 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKD 294


>gi|326934708|ref|XP_003213427.1| PREDICTED: transitional endoplasmic reticulum ATPase-like, partial
           [Meleagris gallopavo]
          Length = 674

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/235 (19%), Positives = 84/235 (35%), Gaps = 34/235 (14%)

Query: 2   MDREGLLSRNVSQED-------ADISLLR------PR-TLEEFTGQVEACSNLKVFIEAA 47
           +D E + S  V+ +D       ++ S LR      P+ T E+  G  +    L+  ++  
Sbjct: 305 IDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYP 364

Query: 48  KARAEAL--------DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKA 93
               +            VLF GPPG GKT LA+ +A E   NF S  GP +         
Sbjct: 365 VEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESE 424

Query: 94  GDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINL 151
            ++  +          VLF DE+  ++                D ++ +  +        
Sbjct: 425 ANVREIFDKARQAAPCVLFFDELDSIAKARGGN--IGDGGGAADRVINQILTEMDGMSTK 482

Query: 152 SRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVT 204
               +I AT R  ++   +    R    I +   + +    I++   + + +A  
Sbjct: 483 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKD 537



 Score = 52.8 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 54/251 (21%), Positives = 88/251 (35%), Gaps = 31/251 (12%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------------VLFVGPPGLGKTTLA 71
           +L E  G  +     K   +  +     L H              +L  GPPG GKT +A
Sbjct: 83  SLNE-VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 141

Query: 72  QVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEE 123
           + VA E G  F   +GP I          +L       E     ++FIDE+  ++   E+
Sbjct: 142 RAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK 201

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183
                        +V +  +        +   ++AAT R   +   L+ RFG   R    
Sbjct: 202 -----THGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALR-RFGRFDREVDI 255

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPR--IAGRLLRRVRDFAEVAHAKTI 241
            I D   +  + A  T   V  + A   +  +    R  +    L      AEV ++  +
Sbjct: 256 GIPDATVLCFQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAV 315

Query: 242 TREIADAALLR 252
           T +    AL +
Sbjct: 316 TMDDFRWALSQ 326


>gi|322378503|ref|ZP_08052953.1| ATP-dependent C1p protease (clpA) [Helicobacter suis HS1]
 gi|321149064|gb|EFX43514.1| ATP-dependent C1p protease (clpA) [Helicobacter suis HS1]
          Length = 741

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/210 (20%), Positives = 79/210 (37%), Gaps = 37/210 (17%)

Query: 28  EEFTGQV----EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFR 83
           +E   Q     +  S +K+      A  + +   LFVGP G+GKT LA+V+A+ + ++  
Sbjct: 443 KEVFAQEIAISKLVSAIKIHASGLIATKKPVASFLFVGPSGVGKTELAKVLAKHMHLHLE 502

Query: 84  STSGPVIAKAGDLAALLTNL------------------EDRDVLFIDEIHRLSIIVEEIL 125
                   +A  ++ L+                       R VL +DEI +    + ++L
Sbjct: 503 RFDMSEYKEAHSISKLIGAPSGYVGFEQGGLLINAIRKHPRCVLLLDEIEKAHPNIYDLL 562

Query: 126 YPAMEDFQLDLMVG-EGPSARSVKINLSRF--------------TLIAATTRVGLLTNPL 170
               ++  L    G +G  + ++ I  S                T         LL+  L
Sbjct: 563 LQITDNASLTDNSGKKGDFSHAILILTSNAGSDALGQMGFLEDHTHKYQKALKELLSPEL 622

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
           + R    +      +E+L++IVQ+  K   
Sbjct: 623 RSRLDAILTFKPLSLENLESIVQKECKKLE 652


>gi|312795599|ref|YP_004028521.1| cell division protein ftsH [Burkholderia rhizoxinica HKI 454]
 gi|312167374|emb|CBW74377.1| Cell division protein ftsH (EC 3.4.24.-) [Burkholderia rhizoxinica
           HKI 454]
          Length = 630

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 90/249 (36%), Gaps = 23/249 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAA-------KARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G  EA   +   ++         K        VL VGPPG GKT LA+ +A E 
Sbjct: 152 NFTDVAGCDEAKEEVSELVDFLRDPQKFQKLGGRIPRGVLLVGPPGTGKTLLARAIAGEA 211

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  +    +     ++FIDEI  +       +    +
Sbjct: 212 KVPFFSISGSDFVEMFVGVGAARVRDMFEQAKKHAPCIVFIDEIDAVGRHRGAGMGGGND 271

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  M+ E     +     S   +IAAT R  +L   L    RF   + +   +I 
Sbjct: 272 EREQTLNQMLVEMDGFEAN----SGVIVIAATNRSDVLDKALLRPGRFDRQVYVGLPDIR 327

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++   +   ++   +A+         +      L+     FA     + +  +  
Sbjct: 328 GREQILKVHLRKVPISNDVDASVVARGTPGFSGADLANLVNEAALFAARRGKRIVEMQDF 387

Query: 247 DAALLRLAI 255
           + A  ++ +
Sbjct: 388 EDAKDKIFM 396


>gi|220909618|ref|YP_002484929.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7425]
 gi|219866229|gb|ACL46568.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7425]
          Length = 632

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 62/273 (22%), Positives = 97/273 (35%), Gaps = 23/273 (8%)

Query: 27  LEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVARELG 79
            ++  G  EA   L+  +   K         A     VL VGPPG GKT LA+ +A E G
Sbjct: 176 FDDVAGIEEAKEELQEVVTFLKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAG 235

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMED 131
           V F S SG           A  +  L    ++    ++FIDEI  +       +    ++
Sbjct: 236 VPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIIFIDEIDAVGRQRGAGIGGGNDE 295

Query: 132 FQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            +  L  ++ E               +IAAT R  +L   L    RF   + ++  +I+ 
Sbjct: 296 REQTLNQLLTEMDGFEGNTG----IIIIAATNRPDVLDAALLRPGRFDRQVTVDAPDIKG 351

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
              I+   A+   LA               T      LL            + IT    D
Sbjct: 352 RLEILGVHARNKKLAPEVSLDAIARRTPGFTGADLANLLNEAAILTARRRKEAITMLEID 411

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV 280
            A+ R+     G   +D +   +IA +  G  +
Sbjct: 412 DAVDRVVAGMEGTPLVDSKSKRLIAYHEIGHAI 444


>gi|156841249|ref|XP_001643999.1| hypothetical protein Kpol_1070p24 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156114631|gb|EDO16141.1| hypothetical protein Kpol_1070p24 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 881

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 69/190 (36%), Gaps = 21/190 (11%)

Query: 26  TLEEFTGQVEACSNLK-----VFIEAAKARA--EALDHVLFVGPPGLGKTTLAQVVAREL 78
             ++  G   A ++LK      F+     R   E +  +L  GPPG GKT LA+ VA E 
Sbjct: 594 RWDDIAGLESAKASLKEAVVYPFLRPDLFRGLREPVRGMLLFGPPGTGKTMLARAVATES 653

Query: 79  GVNFRSTSGPVIAKA------GDLAALLTNLEDR--DVLFIDEIHRL-----SIIVEEIL 125
              F S S   +           + AL    +     ++F+DEI  +     +    E  
Sbjct: 654 HSTFFSISASSLTSKFLGESEKLVRALFAVAKKLSPSIIFVDEIDSIMGSRDNEGENESS 713

Query: 126 YPAMEDFQLDLMVGEGPSA-RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
                +F +        +A      +  R  L+AAT     +    + RF     +   E
Sbjct: 714 RRIKNEFLIQWSSLSNAAAGNEKDTDDERVLLLAATNIPWSIDEAARRRFVRRQYIPLPE 773

Query: 185 IEDLKTIVQR 194
            E  +  ++R
Sbjct: 774 RETRQVHLRR 783


>gi|169774901|ref|XP_001821918.1| lon protease [Aspergillus oryzae RIB40]
 gi|83769781|dbj|BAE59916.1| unnamed protein product [Aspergillus oryzae]
          Length = 1114

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/215 (21%), Positives = 76/215 (35%), Gaps = 38/215 (17%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI   K R      +L  VGPPG+GKT++ + +AR L   +   S
Sbjct: 575 EDHYGLKDVKDRILEFIAVGKLRGTVEGKILCLVGPPGVGKTSIGKSIARALNRQYYRFS 634

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDEI ++    +        
Sbjct: 635 VGGLTDVAEIKGHRRTYVGALPGRIIQALKKCQTENPLILIDEIDKIGRGHQGDPSSALL 694

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V ++LS+   +        +  PL DR  + I L+ 
Sbjct: 695 ELLDPEQNSSFLD-------HYMDVPVDLSKVLFVCTANVTDTIPRPLLDRMEL-IELSG 746

Query: 183 YEIEDLKTIVQR----GAKLTG-LAVTDEAACEIA 212
           Y  ++   I QR     A+    L   D    E A
Sbjct: 747 YVADEKMAIAQRYLAPAARELTGLKDVDVNLKEEA 781


>gi|312216774|emb|CBX96724.1| similar to cell division control protein 48 [Leptosphaeria
           maculans]
          Length = 830

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 48/258 (18%), Positives = 87/258 (33%), Gaps = 17/258 (6%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLED 105
           +    +L  GPPG GKT +A+ VA E G  F   +GP I          +L       E 
Sbjct: 264 KPPRGILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEK 323

Query: 106 RD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
               ++FIDEI  ++   ++             +V +  +        S   ++AAT R 
Sbjct: 324 NSPAIIFIDEIDSIAPKRDK-----TNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRP 378

Query: 164 GLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRI 221
             +   L+   RF   + +   +      I+Q   K   LA   +     A         
Sbjct: 379 NSIDPALRRFGRFDREVDIGIPDPTGRLEIMQIHTKNMKLADDVDLQTIAAETHGYVGSD 438

Query: 222 AGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVG 281
              L        +    K    ++ +  +    +D +G    + R+   ++       V 
Sbjct: 439 LASLCSEAAM--QQIREKMDLIDLDEDTIDAEVLDSLGVTMENFRFALGVSNPSALREVA 496

Query: 282 IETISAGLSEPRDAIEDL 299
           +  +     E    +ED+
Sbjct: 497 VVEVPNVRWEDIGGLEDV 514



 Score = 50.1 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 78/217 (35%), Gaps = 14/217 (6%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--V 108
           VLF GPPG GKT LA+ VA E   NF S  GP +          ++  +          V
Sbjct: 543 VLFYGPPGTGKTLLAKAVANECAANFISIKGPELLSMWFGESESNIRDIFDKARAAAPCV 602

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +F+DE+  ++         A      D +V +  +      +     +I AT R   L N
Sbjct: 603 VFLDELDSIAKSRGGSQGDA--GGASDRVVNQLLTEMDGMTSKKNVFVIGATNRPEQLDN 660

Query: 169 PLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
            L    R    + +   +     +I++   + T +A         A     +    G + 
Sbjct: 661 ALCRPGRLDTLVYVPLPDQASRASILKAQLRKTPVADDVNIDFIAANTHGFSGADLGFVT 720

Query: 227 RRVRDFA--EVAHAKTITREIADAALLRLAIDKMGFD 261
           +R    A  +        R+  +AA   + ++    D
Sbjct: 721 QRAVKLAIKQSISIDIERRKAREAAGEDVDMEDDAED 757


>gi|253577136|ref|ZP_04854457.1| stage V sporulation protein K [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251843518|gb|EES71545.1| stage V sporulation protein K [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 327

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 49/235 (20%), Positives = 85/235 (36%), Gaps = 30/235 (12%)

Query: 25  RTLEEFTGQVEACS---NLKVFIEAAKARAEA-------LDHVLFVGPPGLGKTTLAQVV 74
           + L+   G          +   ++ A  R+EA       + H++F G PG GKTT+A++V
Sbjct: 59  KELDHLVGLDHIKELMYEIYALLQIASMRSEAGLLSSAQVYHMVFKGNPGTGKTTVARIV 118

Query: 75  ARELGVNFRSTSGPVI--AKAGDLAALLTNLEDRD----------VLFIDEIHRLSIIVE 122
           A+        + G +I   +A  +   + +   +           +LFIDE + L+   E
Sbjct: 119 AKMFQRMGVLSKGHLIEVERADLVGEYIGHTAQKTRDLVKKALGGILFIDEAYSLARGGE 178

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           +       D  +  M         +    S       +T  G     L  RF I +    
Sbjct: 179 KDFGKEAIDTLVKAMEDHKNQFILILAGYSDEMDFFLSTNPG-----LPSRFPIQMDFPD 233

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAM---RSRGTPRIAGRLLRRVRDFAE 234
           Y I+ L  I +  AK     +  +A  ++     R +          R VR+  E
Sbjct: 234 YTIDQLIQIAEGMAKERDYILMPQAILKLKQHLLREKCESDQVFSNARYVRNVIE 288


>gi|198433804|ref|XP_002132122.1| PREDICTED: similar to YME1-like 1 [Ciona intestinalis]
          Length = 702

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 91/249 (36%), Gaps = 23/249 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAK-------ARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
             E+  G  EA + L+  ++  +         A+    +L +GPPG GKT LA+ VA E 
Sbjct: 233 RFEDVCGMDEAKNELEDVVDYLRDPDKFTQLGAKLPKGILLIGPPGTGKTLLAKAVAGES 292

Query: 79  GVNFRSTSGPVIA------KAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAME 130
           GV F  T+G           A  +  L  N   +   ++FIDEI                
Sbjct: 293 GVPFFYTAGSEFDEMFVGIGASRIRKLFENARKQAPSIIFIDEIDACGSKRTNSSLQPYA 352

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
              ++ ++ E               ++ AT    +L   L    RF   +++   +I+  
Sbjct: 353 RQTINQLLQEMDGFT----KKEPVIVLGATNTGEVLDKALTRPGRFDTQVQVLLPDIQGR 408

Query: 189 KTIVQRGAKLTGLAVTDEAACEI--AMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
           K I         + + ++   +   A+    T      ++ +    A   + + + ++  
Sbjct: 409 KDIFNLYIGKLDINIDNQLNLDKLAALTIGMTGADISNIVNQAALRAAKLNKQRVDQDDL 468

Query: 247 DAALLRLAI 255
           + AL +  +
Sbjct: 469 EYALDKAKM 477


>gi|196228661|ref|ZP_03127527.1| ATPase associated with various cellular activities AAA_3
           [Chthoniobacter flavus Ellin428]
 gi|196226942|gb|EDY21446.1| ATPase associated with various cellular activities AAA_3
           [Chthoniobacter flavus Ellin428]
          Length = 353

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 69/196 (35%), Gaps = 33/196 (16%)

Query: 30  FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTS--- 86
             GQ +    L + + A         H L  G PGL KT + + ++R + ++FR      
Sbjct: 44  IVGQQDVIEQLVIAVLAG-------GHCLLEGVPGLAKTAMIRSLSRTMDLSFRRIQFTP 96

Query: 87  --GPVIAKAGDLAALLTNLEDRDVLF-----------IDEIHRLSIIVEEILYPAMEDFQ 133
              P      D+         R  +F            DEI+R     +  L  AM++  
Sbjct: 97  DLMPADITGTDIIQEDPATGRRQFIFQRGPIFTQMLLADEINRTPPKTQAALLEAMQEHS 156

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPL----QDRFGIPIRLNFYEIEDLK 189
           + +         ++K+    F L          T PL    +DRF   +++++ E E  +
Sbjct: 157 VTV------GGHTLKLEEPFFVLATQNPIEQEGTYPLPEAQKDRFIFLVKVDYPEREHER 210

Query: 190 TIVQRGAKLTGLAVTD 205
            I+ R        +  
Sbjct: 211 QIIARTTGTFEADLQP 226


>gi|168050549|ref|XP_001777721.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162670941|gb|EDQ57501.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 850

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 62/330 (18%), Positives = 111/330 (33%), Gaps = 62/330 (18%)

Query: 23  RPRTLEEFTGQVEACSNLKVFI--------EAAKARAEALDH-----VLFVGPPGLGKTT 69
           RP+++ +  G       ++ ++         A K +  +        VL  GPPG+GKTT
Sbjct: 294 RPQSINDIIGNQSIVKQVQDWLVQWEKHHGNAVKGKKGSSSTSQKKAVLLSGPPGIGKTT 353

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGD--------------LAALLTN--------LEDRD 107
            A++V   LG      +        D              +  +++N         E + 
Sbjct: 354 TARLVCDLLGYEALEVNASDTRGKSDSNVKNGIGGKTSNTIKEMISNRSLGFGSKSERKA 413

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167
           VL +DE+  +S                DL++          I  S   +I          
Sbjct: 414 VLIMDEVDGMSGGD--------RGGVADLIL---------SIKSSHIPIICICNDKYSQK 456

Query: 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
                 + +P+       + +   +Q+ AK  GL V D A  E++ R  G  R+A   L+
Sbjct: 457 LKSLINYCLPLPFRKPTKQQMAKRLQQIAKSEGLEVDDLALEELSERVNGDMRMALNQLQ 516

Query: 228 RVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIE-TIS 286
            +   +       +   +  +A      D   F  +D          F GG + ++  I 
Sbjct: 517 YMSLRSRSLKYSDVRTRLMASAKDE---DVTPFSAVDKLL------GFEGGRLRMDERID 567

Query: 287 AGLSEPRDAIEDLIEPYMIQQGFIQRTPRG 316
           A +S+       + E Y+   G   R   G
Sbjct: 568 AAMSDMDLVPLLVQENYLNYCGPGGRDDSG 597


>gi|126175446|ref|YP_001051595.1| ATP-dependent metalloprotease FtsH [Shewanella baltica OS155]
 gi|153001797|ref|YP_001367478.1| ATP-dependent metalloprotease FtsH [Shewanella baltica OS185]
 gi|160876530|ref|YP_001555846.1| ATP-dependent metalloprotease FtsH [Shewanella baltica OS195]
 gi|125998651|gb|ABN62726.1| membrane protease FtsH catalytic subunit [Shewanella baltica OS155]
 gi|151366415|gb|ABS09415.1| ATP-dependent metalloprotease FtsH [Shewanella baltica OS185]
 gi|160862052|gb|ABX50586.1| ATP-dependent metalloprotease FtsH [Shewanella baltica OS195]
          Length = 657

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 93/250 (37%), Gaps = 23/250 (9%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAA-------KARAEALDHVLFVGPPGLGKTTLAQVVARE 77
            T  +  G  EA   +K  ++         K        VL VGPPG GKT LA+ +A E
Sbjct: 159 TTFADVAGCDEAKEEVKELVDYLRDPTKFQKLGGRIPTGVLMVGPPGTGKTLLAKAIAGE 218

Query: 78  LGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
             V F + SG       V   A  +  +    +     ++FIDEI  +       L    
Sbjct: 219 SKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKSAPCIIFIDEIDAVGRQRGAGLGGGH 278

Query: 130 EDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           ++ +  L  M+ E       +       +IAAT R  +L + L    RF   + +   ++
Sbjct: 279 DEREQTLNQMLVEMDGFEGNEG----VIVIAATNRPDVLDSALLRPGRFDRQVVVGLPDV 334

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
              + I++   +   L+   +A+         +      L+     FA   + + +  E 
Sbjct: 335 RGREQILKVHMRKVPLSEDVKASVIARGTPGFSGADLANLVNEAALFAARGNRRVVGMEE 394

Query: 246 ADAALLRLAI 255
            + A  ++ +
Sbjct: 395 FERAKDKIMM 404


>gi|46201290|ref|ZP_00208042.1| COG0465: ATP-dependent Zn proteases [Magnetospirillum
           magnetotacticum MS-1]
          Length = 639

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 56/249 (22%), Positives = 93/249 (37%), Gaps = 23/249 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAK-------ARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T E+  G  EA   L+  +E  K          +     L VGPPG GKT LA+ +A E 
Sbjct: 153 TFEDVAGIDEAKQELEEIVEFLKDPQKFQRLGGKIPKGCLLVGPPGTGKTLLARAIAGEA 212

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F + SG       V   A  +  +    +     ++FIDEI  +       L    +
Sbjct: 213 NVPFFTISGSDFVEMFVGVGASRVRDMFEQGKKNAPCIIFIDEIDAVGRHRGAGLGGGND 272

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E     S +       LIAAT R  +L   L    RF   + +   +I 
Sbjct: 273 EREQTLNQLLVEMDGFESNEG----VILIAATNRPDVLDPALLRPGRFDRQVTVPNPDIL 328

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++   +   L+   +A          +      L+      A  A  + +T    
Sbjct: 329 GREKIIKVHMRKVPLSPDVDARIIARGTPGFSGADLANLVNEAALLAARAGKRVVTMAEF 388

Query: 247 DAALLRLAI 255
           +AA  ++ +
Sbjct: 389 EAAKDKVMM 397


>gi|28198007|ref|NP_778321.1| cell division protein [Xylella fastidiosa Temecula1]
 gi|71899229|ref|ZP_00681391.1| Peptidase M41, FtsH [Xylella fastidiosa Ann-1]
 gi|182680633|ref|YP_001828793.1| ATP-dependent metalloprotease FtsH [Xylella fastidiosa M23]
 gi|28056067|gb|AAO27970.1| cell division protein [Xylella fastidiosa Temecula1]
 gi|71730962|gb|EAO33031.1| Peptidase M41, FtsH [Xylella fastidiosa Ann-1]
 gi|182630743|gb|ACB91519.1| ATP-dependent metalloprotease FtsH [Xylella fastidiosa M23]
          Length = 645

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 54/246 (21%), Positives = 88/246 (35%), Gaps = 23/246 (9%)

Query: 26  TLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  EA   +   +       +  K   +    VL VGPPG GKT LA+ +A E 
Sbjct: 163 TFADVAGCDEAKEEVGELVDFLRDPTKFTKLGGKIPRGVLMVGPPGTGKTLLAKAIAGEA 222

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  +    +     ++FIDEI  +       L    +
Sbjct: 223 KVPFFSISGSDFVEMFVGVGASRVRDMFEQAKKHAPCIIFIDEIDAVGRHRGAGLGGGHD 282

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E       +       +IAAT R  +L   L    RF   + +   +++
Sbjct: 283 EREQTLNQLLVEMDGFEGGEG----VIVIAATNRPDVLDPALLRPGRFDRQVVVALPDVK 338

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I+    +   LA   E           +      L      FA  ++ K +     
Sbjct: 339 GREQILGVHMRKLLLANDVEPLVIARGTPGFSGADLANLCNEAALFAARSNEKEVRMNHF 398

Query: 247 DAALLR 252
           DAA  +
Sbjct: 399 DAARDK 404


>gi|322490717|emb|CBZ25980.1| Transitional endoplasmic reticulum ATPase,putative [Leishmania
           mexicana MHOM/GT/2001/U1103]
          Length = 785

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 74/195 (37%), Gaps = 23/195 (11%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHV--------LFVGPPGLGKTTLAQVVARELG 79
           ++  G  +  + ++  +E      E   ++        L  GPPG GKT +A+ VA E G
Sbjct: 194 DDIGGCRKQLNQIREMVELPIRHPELFKNIGIKPPRGILLYGPPGSGKTLIARAVANETG 253

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAMED 131
             F   +GP I          +L       E     ++FIDEI  ++   E+      + 
Sbjct: 254 AFFFLINGPEIMSKMAGESESNLRKAFEEAEKNAPAIIFIDEIDSIAPKREK-----AQG 308

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
                +V +  +      + S+  ++AAT R   +   L+   RF   + +   +     
Sbjct: 309 EVEKRIVSQLLTLMDGMKSRSQVIVMAATNRPNTIDPALRRFGRFDRELDIGVPDETGRL 368

Query: 190 TIVQRGAKLTGLAVT 204
            I++   K   LA  
Sbjct: 369 EIIRIHTKNMKLADD 383



 Score = 53.2 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 88/249 (35%), Gaps = 24/249 (9%)

Query: 28  EEFTGQVEACSNLKVFIEAA--------KARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           E+  G ++    L+  ++          K        VLF GPPG GKT LA+ +A E  
Sbjct: 467 EDVGGLLDVKRELQELVQYPVEYPWKFEKYGMSPPKGVLFYGPPGCGKTLLAKAIATECQ 526

Query: 80  VNFRSTSGPVIAKA--GDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAMED 131
            NF S  GP +     G+  A + ++ D+       VLF DE+  ++           + 
Sbjct: 527 ANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCVLFFDELDSVAKSR----GAHGDG 582

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
              D ++ +  +            +I AT R  +L   +    R    I +   +     
Sbjct: 583 GASDRVINQILTEMDGMNVKKNVFIIGATNRPDVLDPAIMRPGRLDQLIYIPLPDKASRV 642

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA--EVAHAKTITREIAD 247
            I++   + + LA   +     A     +      + +R    A  E  + +    E+  
Sbjct: 643 AIIKASFRKSPLASDVDVDQIAAATHGFSGADLSGICQRACKMAIRESINKEIQLEELKK 702

Query: 248 AALLRLAID 256
           +  L    D
Sbjct: 703 SGQLDENAD 711


>gi|319427312|gb|ADV55386.1| ATP-dependent metalloprotease FtsH [Shewanella putrefaciens 200]
          Length = 652

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 93/250 (37%), Gaps = 23/250 (9%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAA-------KARAEALDHVLFVGPPGLGKTTLAQVVARE 77
            T  +  G  EA   +K  ++         K        VL VGPPG GKT LA+ +A E
Sbjct: 154 TTFADVAGCDEAKEEVKELVDYLRDPTKFQKLGGRIPTGVLMVGPPGTGKTLLAKAIAGE 213

Query: 78  LGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
             V F + SG       V   A  +  +    +     ++FIDEI  +       L    
Sbjct: 214 SKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKSAPCIIFIDEIDAVGRQRGAGLGGGH 273

Query: 130 EDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           ++ +  L  M+ E       +       +IAAT R  +L + L    RF   + +   ++
Sbjct: 274 DEREQTLNQMLVEMDGFEGNEG----VIVIAATNRPDVLDSALLRPGRFDRQVVVGLPDV 329

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
              + I++   +   L+   +A+         +      L+     FA   + + +  E 
Sbjct: 330 RGREQILKVHMRKVPLSEDVKASVIARGTPGFSGADLANLVNEAALFAARGNRRVVGMEE 389

Query: 246 ADAALLRLAI 255
            + A  ++ +
Sbjct: 390 FERAKDKIMM 399


>gi|282880908|ref|ZP_06289599.1| ATP-dependent metallopeptidase HflB [Prevotella timonensis CRIS
           5C-B1]
 gi|281305131|gb|EFA97200.1| ATP-dependent metallopeptidase HflB [Prevotella timonensis CRIS
           5C-B1]
          Length = 673

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 53/249 (21%), Positives = 95/249 (38%), Gaps = 28/249 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ  A   ++  ++  K          +     L VGPPG GKT LA+ VA E 
Sbjct: 198 TFKDVAGQAGAKQEVQEIVDFLKNPHRYTDLGGKIPKGALLVGPPGTGKTLLAKAVAGEA 257

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM- 129
           GV F S SG       V   A  +  L    +++   ++FIDEI  +     +   P+M 
Sbjct: 258 GVPFFSMSGSDFVEMFVGVGASRVRDLFRQAKEKSPSIIFIDEIDAVGRARSKN--PSMG 315

Query: 130 ----EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183
                +  L+ ++ E     +     S   ++AAT R  +L + L    RF   I ++  
Sbjct: 316 GNDERENTLNALLTEMDGFGTN----SGVIILAATNRADMLDSALLRAGRFDRQISVDLP 371

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           ++ + K I     +    +   +           +      +       A   + K++ +
Sbjct: 372 DLPERKEIFLVHLRKVKTSPDLDIDFLSRQTPGFSGADIANVCNEAALIAARHNKKSVGK 431

Query: 244 EIADAALLR 252
           +    A+ R
Sbjct: 432 QDFLDAVDR 440


>gi|255556934|ref|XP_002519500.1| Transitional endoplasmic reticulum ATPase, putative [Ricinus
           communis]
 gi|223541363|gb|EEF42914.1| Transitional endoplasmic reticulum ATPase, putative [Ricinus
           communis]
          Length = 806

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/175 (25%), Positives = 62/175 (35%), Gaps = 35/175 (20%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------------VLFVGPPGLGKTTLA 71
            L+E  G  +     K   +  +     L H              +L  GPPG GKT +A
Sbjct: 201 RLDE-VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIA 259

Query: 72  QVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEE 123
           + VA E G  F   +GP I          +L       E     ++FIDEI  ++   E+
Sbjct: 260 RAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREK 319

Query: 124 ILYPA---MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
                   +    L LM G    A  + I         AT R   +   L+ RFG
Sbjct: 320 THGEVERRIVSQLLTLMDGLKSRAHVIVI--------GATNRPNSIDPALR-RFG 365



 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 75/226 (33%), Gaps = 20/226 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVARE 77
           + E+  G       L+  ++      E            VLF GPPG GKT LA+ +A E
Sbjct: 479 SWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANE 538

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
              NF S  GP +          ++  +          VLF DE+  ++      +  A 
Sbjct: 539 CQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDA- 597

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                D ++ +  +            +I AT R  ++   L    R    I +   + + 
Sbjct: 598 -GGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDS 656

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
              I +   + + ++   +           +      + +R   +A
Sbjct: 657 RHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYA 702


>gi|217972308|ref|YP_002357059.1| ATP-dependent metalloprotease FtsH [Shewanella baltica OS223]
 gi|304410272|ref|ZP_07391891.1| ATP-dependent metalloprotease FtsH [Shewanella baltica OS183]
 gi|307302017|ref|ZP_07581775.1| ATP-dependent metalloprotease FtsH [Shewanella baltica BA175]
 gi|217497443|gb|ACK45636.1| ATP-dependent metalloprotease FtsH [Shewanella baltica OS223]
 gi|304351681|gb|EFM16080.1| ATP-dependent metalloprotease FtsH [Shewanella baltica OS183]
 gi|306914055|gb|EFN44476.1| ATP-dependent metalloprotease FtsH [Shewanella baltica BA175]
 gi|315268724|gb|ADT95577.1| ATP-dependent metalloprotease FtsH [Shewanella baltica OS678]
          Length = 652

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 93/250 (37%), Gaps = 23/250 (9%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAA-------KARAEALDHVLFVGPPGLGKTTLAQVVARE 77
            T  +  G  EA   +K  ++         K        VL VGPPG GKT LA+ +A E
Sbjct: 154 TTFADVAGCDEAKEEVKELVDYLRDPTKFQKLGGRIPTGVLMVGPPGTGKTLLAKAIAGE 213

Query: 78  LGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
             V F + SG       V   A  +  +    +     ++FIDEI  +       L    
Sbjct: 214 SKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKSAPCIIFIDEIDAVGRQRGAGLGGGH 273

Query: 130 EDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           ++ +  L  M+ E       +       +IAAT R  +L + L    RF   + +   ++
Sbjct: 274 DEREQTLNQMLVEMDGFEGNEG----VIVIAATNRPDVLDSALLRPGRFDRQVVVGLPDV 329

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
              + I++   +   L+   +A+         +      L+     FA   + + +  E 
Sbjct: 330 RGREQILKVHMRKVPLSEDVKASVIARGTPGFSGADLANLVNEAALFAARGNRRVVGMEE 389

Query: 246 ADAALLRLAI 255
            + A  ++ +
Sbjct: 390 FERAKDKIMM 399


>gi|194225438|ref|XP_001498145.2| PREDICTED: similar to valosin [Equus caballus]
          Length = 822

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/235 (19%), Positives = 84/235 (35%), Gaps = 34/235 (14%)

Query: 2   MDREGLLSRNVSQED-------ADISLLR------PR-TLEEFTGQVEACSNLKVFIEAA 47
           +D E + S  V+ +D       ++ S LR      P+ T E+  G  +    L+  ++  
Sbjct: 455 IDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYP 514

Query: 48  KARAEAL--------DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKA 93
               +            VLF GPPG GKT LA+ +A E   NF S  GP +         
Sbjct: 515 VEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESE 574

Query: 94  GDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINL 151
            ++  +          VLF DE+  ++                D ++ +  +        
Sbjct: 575 ANVREIFDKARQAAPCVLFFDELDSIAKARGGN--IGDGGGAADRVINQILTEMDGMSTK 632

Query: 152 SRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVT 204
               +I AT R  ++   +    R    I +   + +    I++   + + +A  
Sbjct: 633 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKD 687



 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 51/266 (19%), Positives = 89/266 (33%), Gaps = 32/266 (12%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------------VLFVGPPGLGKTTLA 71
           +L E  G  +     K   +  +     L H              +L  GPPG GKT +A
Sbjct: 215 SLNE-VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 273

Query: 72  QVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEE 123
           + VA E G  F   +GP I          +L       E     ++FIDE+  ++   E+
Sbjct: 274 RAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK 333

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLN 181
                        +V +  +        +   ++AAT R   +   L+   RF   + + 
Sbjct: 334 -----THGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIG 388

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
             +      I+Q   K   LA  D    ++A  + G        L       +    K  
Sbjct: 389 IPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADLAAL-CSEAALQAIRKKMD 446

Query: 242 TREIADAALLRLAIDKMGFDQLDLRY 267
             ++ D  +    ++ +     D R+
Sbjct: 447 LIDLEDETIDAEVMNSLAVTMDDFRW 472


>gi|189485257|ref|YP_001956198.1| ATP-dependent Clp protease ATP-binding subunit X [uncultured
           Termite group 1 bacterium phylotype Rs-D17]
 gi|170287216|dbj|BAG13737.1| ATP-dependent Clp protease ATP-binding subunit X [uncultured
           Termite group 1 bacterium phylotype Rs-D17]
          Length = 412

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/147 (27%), Positives = 70/147 (47%), Gaps = 32/147 (21%)

Query: 8   LSRNVSQEDADISLLR---P----RTLEEF-TGQVEACSNLKVFIEAAKARAEAL----- 54
           L  N++++++  ++LR   P    R L+ +  GQ  A   L V +     R EA+     
Sbjct: 40  LFENLNKKESKETMLRLPKPGELKRFLDAYVIGQEHAKKILSVAVYNHYKRLEAIVSKDD 99

Query: 55  -----DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL-- 103
                 +VL +GP G GKT LAQ +A+ L V F  +   V+ +AG    D+  +L  L  
Sbjct: 100 VELQKSNVLLIGPTGAGKTLLAQTLAKILDVPFAISDATVLTEAGYVGEDVENILLRLIQ 159

Query: 104 --------EDRDVLFIDEIHRLSIIVE 122
                    ++ +++IDEI ++S   +
Sbjct: 160 NASFDIRKAEKGIIYIDEIDKISRKSD 186


>gi|119578807|gb|EAW58403.1| valosin-containing protein, isoform CRA_a [Homo sapiens]
          Length = 632

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/239 (19%), Positives = 84/239 (35%), Gaps = 34/239 (14%)

Query: 2   MDREGLLSRNVSQED-------ADISLLR------PR-TLEEFTGQVEACSNLKVFIEAA 47
           +D E + S  V+ +D       ++ S LR      P+ T E+  G  +    L+  ++  
Sbjct: 392 IDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYP 451

Query: 48  KARAEAL--------DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKA 93
               +            VLF GPPG GKT LA+ +A E   NF S  GP +         
Sbjct: 452 VEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESE 511

Query: 94  GDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINL 151
            ++  +          VLF DE+  ++                D ++ +  +        
Sbjct: 512 ANVREIFDKARQAAPCVLFFDELDSIAKARGGN--IGDGGGAADRVINQILTEMDGMSTK 569

Query: 152 SRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAA 208
               +I AT R  ++   +    R    I +   + +    I++   + + +A      
Sbjct: 570 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKAGCGL 628



 Score = 53.2 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 51/266 (19%), Positives = 89/266 (33%), Gaps = 32/266 (12%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------------VLFVGPPGLGKTTLA 71
           +L E  G  +     K   +  +     L H              +L  GPPG GKT +A
Sbjct: 152 SLNE-VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 210

Query: 72  QVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEE 123
           + VA E G  F   +GP I          +L       E     ++FIDE+  ++   E+
Sbjct: 211 RAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK 270

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLN 181
                        +V +  +        +   ++AAT R   +   L+   RF   + + 
Sbjct: 271 -----THGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIG 325

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
             +      I+Q   K   LA  D    ++A  + G        L       +    K  
Sbjct: 326 IPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADLAAL-CSEAALQAIRKKMD 383

Query: 242 TREIADAALLRLAIDKMGFDQLDLRY 267
             ++ D  +    ++ +     D R+
Sbjct: 384 LIDLEDETIDAEVMNSLAVTMDDFRW 409


>gi|126698263|ref|YP_001087160.1| putative ATP-dependent peptidase [Clostridium difficile 630]
 gi|260682381|ref|YP_003213666.1| putative ATP-dependent peptidase [Clostridium difficile CD196]
 gi|260685980|ref|YP_003217113.1| putative ATP-dependent peptidase [Clostridium difficile R20291]
 gi|115249700|emb|CAJ67517.1| putative ATP-dependent peptidase, M41 family [Clostridium
           difficile]
 gi|260208544|emb|CBA61204.1| putative ATP-dependent peptidase [Clostridium difficile CD196]
 gi|260211996|emb|CBE02529.1| putative ATP-dependent peptidase [Clostridium difficile R20291]
          Length = 467

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 59/264 (22%), Positives = 90/264 (34%), Gaps = 27/264 (10%)

Query: 8   LSRNVSQEDADISLLRPRT-LEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLF 59
           + R+   +D+  +   P+T   +  G  E    L   ++  K+        A+    VLF
Sbjct: 23  MERDNQTDDSLSTK--PKTTFRDVAGLDEVKEELFEIVDFMKSPQKYQKMGAKIPKGVLF 80

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFI 111
            GPPG GKT LA  VA E   +F + +G           A  +  L          ++FI
Sbjct: 81  YGPPGTGKTLLASAVAGETNSSFFNVTGSEFVEKYVGVGAKRVRTLFEKARKEAPSIIFI 140

Query: 112 DEIHRLSIIVEEILYPAME-DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170
           DEI  +       L    E D  L+ ++ E           S   +I AT R+ LL   L
Sbjct: 141 DEIDAVGAKR--HLESNNEKDQTLNQLLVEMDGFNKD----SNVLIIGATNRLDLLDEAL 194

Query: 171 QD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
               RF   I +          I++       +  +                    +   
Sbjct: 195 LRPGRFDRHIHIGAPNYHTRFEILKVHTDDKPIDKSVNLELLAKKTHGFNGAHLSNIANE 254

Query: 229 VRDFAEVAHAKTITREIADAALLR 252
              FA    ++ IT E  D AL R
Sbjct: 255 AAIFAVRDDSECITSEHFDKALER 278


>gi|57641074|ref|YP_183552.1| AAA family ATPase [Thermococcus kodakarensis KOD1]
 gi|57159398|dbj|BAD85328.1| ATPase, AAA superfamily [Thermococcus kodakarensis KOD1]
          Length = 368

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 51/214 (23%), Positives = 81/214 (37%), Gaps = 15/214 (7%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARA----EALDHVLFVGPPGLGKTTLAQVVARELGVNF- 82
           ++  G  EA   L   I    AR     E    +L  GPPG GK+ LA  VA  LG  F 
Sbjct: 93  DDVGGLWEAKKVLSRTIGLHLARVPGKFEPWKGILLFGPPGTGKSLLASAVAGSLGATFL 152

Query: 83  RSTSGPVIAK-----AGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAMEDFQLD 135
                 V++K     +  +A++     ++   ++FIDE   L++     L  A       
Sbjct: 153 NVKVSDVLSKYFGESSKLVASIYHLAREKSPSIVFIDEFDALAMKR-SSLEDAARRVLST 211

Query: 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
            +V      RS      R   +AAT R   L + +  RF + + +   +      I++  
Sbjct: 212 FLVEIDGFKRSDTNE--RVVTLAATNRPWDLDDAILSRFPLRVYVPLPDESSAVEILRIH 269

Query: 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
                +     A  + A+R R + R    L R  
Sbjct: 270 LSGFRVKANLRAVAKEAVRRRYSGRDLANLARLA 303


>gi|56460112|ref|YP_155393.1| ATP-dependent protease ATP-binding subunit ClpX [Idiomarina
           loihiensis L2TR]
 gi|61211402|sp|Q5QXN9|CLPX_IDILO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|56179122|gb|AAV81844.1| ATP-dependent protease Clp, ATPase subunit [Idiomarina loihiensis
           L2TR]
          Length = 423

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 26/141 (18%)

Query: 8   LSRNVSQEDADIS-LLRPRTLEEF-TGQVEACSNL--------KVFIEAAKARAE-ALDH 56
           LS    Q++  +   +R + L+++  GQ  A   L        K    +AK   E    +
Sbjct: 55  LSPVPDQDELPVPKAIR-KHLDDYVIGQDRAKKVLSVAVYNHYKRLRGSAKQEVELGKSN 113

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLTNL--------- 103
           +L +GP G GKT LA+ +AR L V F       + +AG    D+  ++  L         
Sbjct: 114 ILLIGPTGSGKTFLAETLARYLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVE 173

Query: 104 -EDRDVLFIDEIHRLSIIVEE 123
             +R +++IDEI ++S   + 
Sbjct: 174 KAERGIVYIDEIDKISRKSDN 194


>gi|1705678|sp|P54774|CDC48_SOYBN RecName: Full=Cell division cycle protein 48 homolog; AltName:
           Full=Valosin-containing protein homolog; Short=VCP
 gi|862480|gb|AAA80587.1| valosin-containing protein [Glycine max]
 gi|86212372|gb|ABC87759.1| plamsma membrane-associated AAA-ATPase [Glycine max]
          Length = 807

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/175 (25%), Positives = 62/175 (35%), Gaps = 35/175 (20%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------------VLFVGPPGLGKTTLA 71
            L+E  G  +     K   +  +     L H              +L  GPPG GKT +A
Sbjct: 201 RLDE-VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIA 259

Query: 72  QVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEE 123
           + VA E G  F   +GP I          +L       E     ++FIDEI  ++   E+
Sbjct: 260 RAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREK 319

Query: 124 ILYPA---MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
                   +    L LM G    A  + I         AT R   +   L+ RFG
Sbjct: 320 THGEVERRIVSQLLTLMDGLKSRAHVIVI--------GATNRPNSIDPALR-RFG 365



 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 44/255 (17%), Positives = 83/255 (32%), Gaps = 20/255 (7%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVARE 77
           + E+  G       L+  ++      E            VLF GPPG GKT LA+ +A E
Sbjct: 479 SWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANE 538

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
              NF S  GP +          ++  +          VLF DE+  ++      +  A 
Sbjct: 539 CQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDA- 597

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                D ++ +  +            +I AT R  ++   L    R    I +   + + 
Sbjct: 598 -GGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDS 656

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
              I +   + + +A   +           +      + +R   +A   + +        
Sbjct: 657 RHQIFKACLRKSPIAKNVDLRALARHTQGFSGADITEICQRACKYAIRENIEKDIERERK 716

Query: 248 AALLRLAIDKMGFDQ 262
           +     A+D+   D 
Sbjct: 717 SRENPEAMDEDTVDD 731


>gi|12082995|gb|AAG48698.1|AF323913_1 intermembrane space AAA protease IAP-1 [Neurospora crassa]
 gi|12082997|gb|AAG48699.1|AF323914_1 intermembrane space AAA protease IAP-1 [Neurospora crassa]
 gi|21622385|emb|CAD37039.1| AAA protease IAP-1 (mitochondrial intermembrane space) [Neurospora
           crassa]
          Length = 738

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 55/243 (22%), Positives = 88/243 (36%), Gaps = 26/243 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G  EA   L+  I+  +          +    VL VGPPG GKT LA+ VA E 
Sbjct: 253 RFADVHGCDEAKEELQELIDFLRNPEKYSTLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 312

Query: 79  GVNFRSTSGPVIA------KAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAME 130
           GV F + SG           A  +  L    + +   ++FIDE+  +             
Sbjct: 313 GVPFFNMSGSEFEEVYVGVGAKRVRDLFAAAKAKAPSIVFIDELDAIGGRRNSR-DATYV 371

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
              L+ ++ E           S   +I AT     L   L    RF   + ++  ++   
Sbjct: 372 RQTLNQLLTELDGFEQN----SGVIIIGATNFPESLDKALTRPGRFDRNVVVSLPDVRGR 427

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
             I+Q  AK    A  D     IA R+ G   ++G  L  + + A +  +K   + +   
Sbjct: 428 MAILQHHAKRIK-AAADVNLEAIASRTSG---LSGAELENIVNQAAIHASKLKAQAVTQK 483

Query: 249 ALL 251
              
Sbjct: 484 DFE 486


>gi|317405924|gb|EFV86203.1| DNA polymerase III [Achromobacter xylosoxidans C54]
          Length = 400

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 85/245 (34%), Gaps = 31/245 (12%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPR+ +   GQ      L   ++  +     L H  LF G  G+GKTTL++++A+ L   
Sbjct: 19  RPRSFDTLVGQDHVVRALTHALDTQR-----LHHAWLFTGTRGVGKTTLSRILAKSLNCE 73

Query: 82  FRSTSGPVIAKAGDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAMEDFQL 134
              TS P     G   A       R V +++        +  ++ ++E+ +Y        
Sbjct: 74  TGITSKP----CGVCRACTEIDAGRFVDYLELDAASNRGVEEMTQLLEQAVYAPGAGRFK 129

Query: 135 DLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             M+ E             ++++        I ATT    +   +  R  +   L     
Sbjct: 130 VYMIDEVHMLTGHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPA 188

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           + +   +Q       +     A   I   + G+ R A  L     D A    A  +T + 
Sbjct: 189 DSIVGHLQAVLGEEQVGFEVPALRLIGQAASGSMRDALSL----TDQAIAYSAGNLTEDA 244

Query: 246 ADAAL 250
               L
Sbjct: 245 VRGML 249


>gi|319649403|ref|ZP_08003561.1| SpoVK protein [Bacillus sp. 2_A_57_CT2]
 gi|317399037|gb|EFV79717.1| SpoVK protein [Bacillus sp. 2_A_57_CT2]
          Length = 316

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 60/162 (37%), Gaps = 17/162 (10%)

Query: 45  EAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLAALLTN 102
           EA     +   H++F G PG GKTT+A+++ +        + G +I   +A  +   + +
Sbjct: 81  EAGLKAGKQALHMMFKGNPGTGKTTVARLIGKLFQKMNVLSKGHLIEAERADLVGEYIGH 140

Query: 103 LEDRD----------VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152
              +           +LFIDE + L    E+       D  +  M         +    S
Sbjct: 141 TAQKTRDLVKKAIGGILFIDEAYSLGRGGEKDFGKEAIDTLVKHMEDRQHEFILILAGYS 200

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
           R      T     L   L  RF + +    Y IE L  I +R
Sbjct: 201 REMNHFLT-----LNPGLHSRFPLVVDFPDYSIEQLMEIGER 237


>gi|229027912|ref|ZP_04184067.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus AH1271]
 gi|228733426|gb|EEL84253.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus AH1271]
          Length = 612

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 62/248 (25%), Positives = 88/248 (35%), Gaps = 27/248 (10%)

Query: 26  TLEEFTG-----QV--EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G     Q   E    LK   + A+  A     VL VGPPG GKT LA+ VA E 
Sbjct: 139 RFRDVAGADEEKQELVEVVEFLKDPRKFAEVGARIPKGVLLVGPPGTGKTLLARAVAGEA 198

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG       V   A  +  L  N +     ++FIDEI  +       L    +
Sbjct: 199 GVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCIIFIDEIDAVGRQRGAGLGGGHD 258

Query: 131 DFQLD----LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
           + +      L+  +G  A    I      +IAAT R  +L   L    RF   I ++  +
Sbjct: 259 EREQTLNQLLVEMDGFGANEGII------IIAATNRPDILDPALLRPGRFDRQITVDRPD 312

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +   + +++  A+   L                +      LL      A     K I   
Sbjct: 313 VNGREAVLKVHARNKPLDENINLRAIATRTPGFSGADLENLLNEAALVAARQDKKKIDMS 372

Query: 245 IADAALLR 252
             D A  R
Sbjct: 373 DIDEATDR 380


>gi|229194456|ref|ZP_04321260.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus m1293]
 gi|228589046|gb|EEK47060.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus m1293]
          Length = 612

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 62/248 (25%), Positives = 88/248 (35%), Gaps = 27/248 (10%)

Query: 26  TLEEFTG-----QV--EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G     Q   E    LK   + A+  A     VL VGPPG GKT LA+ VA E 
Sbjct: 139 RFRDVAGADEEKQELVEVVEFLKDPRKFAEVGARIPKGVLLVGPPGTGKTLLARAVAGEA 198

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG       V   A  +  L  N +     ++FIDEI  +       L    +
Sbjct: 199 GVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCIIFIDEIDAVGRQRGAGLGGGHD 258

Query: 131 DFQLD----LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
           + +      L+  +G  A    I      +IAAT R  +L   L    RF   I ++  +
Sbjct: 259 EREQTLNQLLVEMDGFGANEGII------IIAATNRPDILDPALLRPGRFDRQITVDRPD 312

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +   + +++  A+   L                +      LL      A     K I   
Sbjct: 313 VNGREAVLKVHARNKPLDENINLRAIATRTPGFSGADLENLLNEAALVAARQDKKKIDMS 372

Query: 245 IADAALLR 252
             D A  R
Sbjct: 373 DIDEATDR 380


>gi|148258950|ref|YP_001243535.1| cell division protein [Bradyrhizobium sp. BTAi1]
 gi|146411123|gb|ABQ39629.1| membrane protease FtsH catalytic subunit [Bradyrhizobium sp. BTAi1]
          Length = 630

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 58/261 (22%), Positives = 95/261 (36%), Gaps = 25/261 (9%)

Query: 26  TLEEFTGQVEACSNLK---VFIEA----AKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  EA   LK    F+ A     +  A     VL VGPPG GKT LA+ +A E 
Sbjct: 160 TFNDVAGVDEAKEELKEVVAFLRAPQEYGRLGARIPKGVLLVGPPGTGKTMLARAIAGEA 219

Query: 79  GVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           GV F S +G            A+  DL     ++    ++FIDE+  L        +PA+
Sbjct: 220 GVPFLSINGSEFVEMFVGVGAARVRDLFEQARSMAP-CIIFIDELDALGKAR--GAFPAV 276

Query: 130 EDFQLDLMVGEGPSARSVKINLSR-FTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
                               + ++   L+AAT R  +L   L    RF   + ++  +  
Sbjct: 277 GGHDEREQTLNQLLVELDGFDPAQGIVLLAATNRPEILDPALLRAGRFDRQVLIDRPDKT 336

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
               I++   +   LA   +     A+ +  T      L+      A    A  +  +  
Sbjct: 337 GRVQILKVHMRKVTLAEDVDPEKIAALTTGFTGADLANLVNEAALLATRRGASAVAMQDF 396

Query: 247 DAALLRLAIDKMGFDQLDLRY 267
            A + R+     G ++ +   
Sbjct: 397 TAGIERIVA---GLEKKNRLL 414


>gi|57238935|ref|YP_180071.1| ATP-dependent protease La [Ehrlichia ruminantium str. Welgevonden]
 gi|58616926|ref|YP_196125.1| ATP-dependent protease La [Ehrlichia ruminantium str. Gardel]
 gi|57161014|emb|CAH57920.1| ATP-dependent protease La [Ehrlichia ruminantium str. Welgevonden]
 gi|58416538|emb|CAI27651.1| ATP-dependent protease La [Ehrlichia ruminantium str. Gardel]
          Length = 801

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 59/305 (19%), Positives = 104/305 (34%), Gaps = 54/305 (17%)

Query: 34  VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA 93
                 L V     K +   L     VGPPG+GKT+LA+ +A   G NF   S   I   
Sbjct: 334 ERILEFLAVLKRIKKPKGPIL---CLVGPPGVGKTSLARSIAEATGRNFVHVSLGGIHDE 390

Query: 94  GDLA------------ALLTNLED----RDVLFIDEIHRL--------SIIVEEILYPAM 129
            ++              ++  ++       +  +DEI ++        +  + E+L    
Sbjct: 391 SEIRGHRRTYVGAMPGKIIKQMKKAKTSNPLFLLDEIDKIGSDFRGDPTAALLEVLDSEH 450

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
               +D  +        V+ +LS    I AT     L+ PL DR  I I ++ Y  ++  
Sbjct: 451 NKHFVDHYIE-------VEFDLSNVMFI-ATANTLNLSKPLIDRMEI-INISGYTEDEKL 501

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            I +  A L      D    E       +      L+R     + V   K     +   A
Sbjct: 502 EIAR--AHLIPKLYKDHGLQEKEW--SISDEAIYHLIRFYTRESGVRSFKRELASLMRKA 557

Query: 250 LLRLAIDKMGFDQLD----------LRYLTMIARNFGGGPVGIET-ISAG-LSEPRDAIE 297
           +  + ++K+    +D           ++   I        VG+ T ++          IE
Sbjct: 558 VKEVLVEKVKSIHIDMDNIEKYAGVRKFSFGIIEKED--LVGMVTGLAYTDTGGDILTIE 615

Query: 298 DLIEP 302
            ++ P
Sbjct: 616 SVLMP 620


>gi|30260256|ref|NP_842633.1| cell division protein FtsH [Bacillus anthracis str. Ames]
 gi|47525318|ref|YP_016667.1| cell division protein FtsH [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49183099|ref|YP_026351.1| cell division protein FtsH [Bacillus anthracis str. Sterne]
 gi|49476704|ref|YP_034418.1| cell division protein [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|52145151|ref|YP_081677.1| cell division protein [Bacillus cereus E33L]
 gi|65317526|ref|ZP_00390485.1| COG0465: ATP-dependent Zn proteases [Bacillus anthracis str. A2012]
 gi|118475836|ref|YP_892987.1| FtsH-2 peptidase [Bacillus thuringiensis str. Al Hakam]
 gi|165872578|ref|ZP_02217210.1| cell division protein FtsH [Bacillus anthracis str. A0488]
 gi|167635100|ref|ZP_02393417.1| cell division protein FtsH [Bacillus anthracis str. A0442]
 gi|167641516|ref|ZP_02399764.1| cell division protein FtsH [Bacillus anthracis str. A0193]
 gi|170707578|ref|ZP_02898031.1| cell division protein FtsH [Bacillus anthracis str. A0389]
 gi|177655624|ref|ZP_02936987.1| cell division protein FtsH [Bacillus anthracis str. A0174]
 gi|190568979|ref|ZP_03021880.1| cell division protein FtsH [Bacillus anthracis Tsiankovskii-I]
 gi|196036369|ref|ZP_03103766.1| cell division protein FtsH [Bacillus cereus W]
 gi|196041768|ref|ZP_03109058.1| cell division protein FtsH [Bacillus cereus NVH0597-99]
 gi|196047383|ref|ZP_03114596.1| cell division protein FtsH [Bacillus cereus 03BB108]
 gi|206977945|ref|ZP_03238832.1| cell division protein FtsH [Bacillus cereus H3081.97]
 gi|217957641|ref|YP_002336183.1| cell division protein FtsH [Bacillus cereus AH187]
 gi|218901267|ref|YP_002449101.1| cell division protein FtsH [Bacillus cereus AH820]
 gi|222093835|ref|YP_002527884.1| cell division protein [Bacillus cereus Q1]
 gi|225862118|ref|YP_002747496.1| cell division protein FtsH [Bacillus cereus 03BB102]
 gi|227812739|ref|YP_002812748.1| cell division protein FtsH [Bacillus anthracis str. CDC 684]
 gi|229600537|ref|YP_002864717.1| cell division protein FtsH [Bacillus anthracis str. A0248]
 gi|254724206|ref|ZP_05185991.1| cell division protein FtsH [Bacillus anthracis str. A1055]
 gi|254735467|ref|ZP_05193175.1| cell division protein FtsH [Bacillus anthracis str. Western North
           America USA6153]
 gi|254744631|ref|ZP_05202310.1| cell division protein FtsH [Bacillus anthracis str. Kruger B]
 gi|254756336|ref|ZP_05208365.1| cell division protein FtsH [Bacillus anthracis str. Vollum]
 gi|254762392|ref|ZP_05214234.1| cell division protein FtsH [Bacillus anthracis str. Australia 94]
 gi|300119160|ref|ZP_07056861.1| cell division protein FtsH [Bacillus cereus SJ1]
 gi|30253577|gb|AAP24119.1| cell division protein FtsH [Bacillus anthracis str. Ames]
 gi|47500466|gb|AAT29142.1| cell division protein FtsH [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49177026|gb|AAT52402.1| cell division protein FtsH [Bacillus anthracis str. Sterne]
 gi|49328260|gb|AAT58906.1| cell division protein [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|51978620|gb|AAU20170.1| cell division protein [Bacillus cereus E33L]
 gi|118415061|gb|ABK83480.1| membrane protease FtsH catalytic subunit [Bacillus thuringiensis
           str. Al Hakam]
 gi|164711706|gb|EDR17251.1| cell division protein FtsH [Bacillus anthracis str. A0488]
 gi|167510501|gb|EDR85899.1| cell division protein FtsH [Bacillus anthracis str. A0193]
 gi|167529574|gb|EDR92324.1| cell division protein FtsH [Bacillus anthracis str. A0442]
 gi|170127574|gb|EDS96448.1| cell division protein FtsH [Bacillus anthracis str. A0389]
 gi|172080035|gb|EDT65134.1| cell division protein FtsH [Bacillus anthracis str. A0174]
 gi|190559903|gb|EDV13887.1| cell division protein FtsH [Bacillus anthracis Tsiankovskii-I]
 gi|195990999|gb|EDX54970.1| cell division protein FtsH [Bacillus cereus W]
 gi|196021785|gb|EDX60479.1| cell division protein FtsH [Bacillus cereus 03BB108]
 gi|196027388|gb|EDX66005.1| cell division protein FtsH [Bacillus cereus NVH0597-99]
 gi|206743851|gb|EDZ55271.1| cell division protein FtsH [Bacillus cereus H3081.97]
 gi|217067927|gb|ACJ82177.1| cell division protein FtsH [Bacillus cereus AH187]
 gi|218538348|gb|ACK90746.1| cell division protein FtsH [Bacillus cereus AH820]
 gi|221237882|gb|ACM10592.1| cell division protein [Bacillus cereus Q1]
 gi|225790446|gb|ACO30663.1| cell division protein FtsH [Bacillus cereus 03BB102]
 gi|227006912|gb|ACP16655.1| cell division protein FtsH [Bacillus anthracis str. CDC 684]
 gi|229264945|gb|ACQ46582.1| cell division protein FtsH [Bacillus anthracis str. A0248]
 gi|298723482|gb|EFI64223.1| cell division protein FtsH [Bacillus cereus SJ1]
 gi|324324055|gb|ADY19315.1| cell division protein FtsH [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 633

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 62/248 (25%), Positives = 88/248 (35%), Gaps = 27/248 (10%)

Query: 26  TLEEFTG-----QV--EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G     Q   E    LK   + A+  A     VL VGPPG GKT LA+ VA E 
Sbjct: 160 RFRDVAGADEEKQELVEVVEFLKDPRKFAEVGARIPKGVLLVGPPGTGKTLLARAVAGEA 219

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG       V   A  +  L  N +     ++FIDEI  +       L    +
Sbjct: 220 GVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCIIFIDEIDAVGRQRGAGLGGGHD 279

Query: 131 DFQLD----LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
           + +      L+  +G  A    I      +IAAT R  +L   L    RF   I ++  +
Sbjct: 280 EREQTLNQLLVEMDGFGANEGII------IIAATNRPDILDPALLRPGRFDRQITVDRPD 333

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +   + +++  A+   L                +      LL      A     K I   
Sbjct: 334 VNGREAVLKVHARNKPLDENINLRAIATRTPGFSGADLENLLNEAALVAARQDKKKIDMS 393

Query: 245 IADAALLR 252
             D A  R
Sbjct: 394 DIDEATDR 401


>gi|327298695|ref|XP_003234041.1| ATP-dependent protease La [Trichophyton rubrum CBS 118892]
 gi|326464219|gb|EGD89672.1| ATP-dependent protease La [Trichophyton rubrum CBS 118892]
          Length = 745

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 71/192 (36%), Gaps = 33/192 (17%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI   K R      +L FVGPPG+GKT++ + +AR L   +   S
Sbjct: 210 EDHYGLKDVKDRILEFIAVGKLRGTVEGKILCFVGPPGVGKTSIGKSIARALNREYYRFS 269

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ ++    +        
Sbjct: 270 VGGLTDVAEIKGHRRTYVGALPGRIIQALKKCQTENPLILIDEVDKIGRGHQGDPASALL 329

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           + ++LS+   +        +  PL DR  + I L+ 
Sbjct: 330 ELLDPEQNSSFLD-------HYMDIPVDLSKVLFVCTANMTDTIPRPLLDRMEL-IELSG 381

Query: 183 YEIEDLKTIVQR 194
           Y  ++   I +R
Sbjct: 382 YVADEKMAIAER 393


>gi|308162288|gb|EFO64695.1| AAA family ATPase [Giardia lamblia P15]
          Length = 870

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 48/255 (18%), Positives = 90/255 (35%), Gaps = 24/255 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDHV--------LFVGPPGLGKTTLAQVVARE 77
           T ++  G       L   I+      E    +        L  GPPG GK+ LA+ +A E
Sbjct: 504 TWDDIGGLEHTKRELIELIQYPIRYKEKYQQMGIEPSRGALLWGPPGTGKSLLAKAIANE 563

Query: 78  LGVNFRSTSGPVI--AKAGDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAM 129
            G N+ S  GP +     G+    + N+ D+       VLF DEI  ++   +     A 
Sbjct: 564 CGCNYISIKGPELLSKWVGESEQNIRNIFDKARQAAPCVLFFDEIESIT---QHRGTSAS 620

Query: 130 EDFQL-DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
              ++ D M+ +  +            +I AT R   + + L    R    I +   +  
Sbjct: 621 GGGEVTDRMLNQILTELDGVGVRKDVFIIGATNRPDTIDSALMRPGRLDTLIYIPLPDYP 680

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGT--PRIAGRLLRRVRDFAEVAHAKTITRE 244
               +++   + + +   + +  +IA  + G     +A    R  +              
Sbjct: 681 SRVAVLKAHLRKSKVNEKEVSLEQIAQVTEGYSGADLAEICSRACKYSIRENVEGFSRAM 740

Query: 245 IADAALLRLAIDKMG 259
            A  ++ +  +D  G
Sbjct: 741 SAFESMKKSWLDSHG 755



 Score = 53.5 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 57/245 (23%), Positives = 91/245 (37%), Gaps = 45/245 (18%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------------AKAGDL--A 97
           +    +L  GPPG GKTT+ + +A E G  F   +G  I             KA D+   
Sbjct: 251 KPPRGILLTGPPGCGKTTIGKAIANEAGAYFFLLNGAEIMSSMAGESEKNLRKAFDICEQ 310

Query: 98  ALLTNLEDRD-----VLFIDEIHRLSIIVEEILYPA---MEDFQLDLMVGEGPSARSVKI 149
               + ++ D     +LFIDEI  ++    E        +    L LM G  P       
Sbjct: 311 EAEKSAKENDGVGCAILFIDEIDCIAGNRAESKGEVEKRVVSQLLTLMDGIKPR------ 364

Query: 150 NLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEA 207
             S   ++AAT R  ++   L+   RF   I++N  +      I+    +   L      
Sbjct: 365 --SNVIVLAATNRPNVIDPALRRFGRFDREIQINVPDENGRLEILSIHTRKLKLHPD--- 419

Query: 208 ACEIAMRSRGTPRIAGRLLRRV-RDFAEV--AHAKTITREIADAALLRLAIDKMGFDQLD 264
                       RIA      V  D A++    A    RE  +  L   + +K+  +QL+
Sbjct: 420 -------GVDIVRIANETNGYVGADLAQICTEAAMMCVRESMEMVLDMESEEKLTDEQLN 472

Query: 265 LRYLT 269
             ++T
Sbjct: 473 KIFIT 477


>gi|297155325|gb|ADI05037.1| hypothetical protein SBI_01916 [Streptomyces bingchenggensis BCW-1]
          Length = 1103

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 53/220 (24%), Positives = 82/220 (37%), Gaps = 45/220 (20%)

Query: 44   IEAAKARAEALD-HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--------- 93
             EAA   A  +  H++F GPPG GKTT+A++ A  L        G ++  A         
Sbjct: 865  REAAGLPAPRISQHLVFSGPPGTGKTTVARLYAGLLHSLGVLPRGQLVEVARADLVGRYV 924

Query: 94   ---GDLAALLTNLEDRDVLFIDEIHRLSIIVE---------EILYPAMEDFQ-LDLMVGE 140
                 L   +       VLFIDE + L+             + L   MED +   +++  
Sbjct: 925  GHTAQLTKEVFESAMGGVLFIDEAYTLTPEGNSSDFGREAVDTLLKLMEDHRDQVVVIVA 984

Query: 141  GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
            G +A   +   S                 L  RF   +    Y  ++L TI++R A+ +G
Sbjct: 985  GYTAEMRRFLDSN--------------PGLASRFSRFVEFENYTTDELLTILERHAEESG 1030

Query: 201  LAVTD--------EAACEIAMRSRGTPRIAGRLLRRVRDF 232
             A             A     RS G  R+A +LL  +  +
Sbjct: 1031 YACPAATLEALRTHIADIPRDRSFGNARLARQLLETMITY 1070



 Score = 42.8 bits (99), Expect = 0.080,   Method: Composition-based stats.
 Identities = 45/188 (23%), Positives = 70/188 (37%), Gaps = 41/188 (21%)

Query: 33  QVEACSNLKVFIEAAKARAEALD----HVLFVGPPGLGKTTLAQVVARELGVNFRSTSG- 87
           QV    NL    +  +     +     H++F GPPG GKTT+A++    L       SG 
Sbjct: 574 QVRTLVNLNQLSQRRQRLGMPVPSMSRHLVFAGPPGTGKTTVARLYGSILAQLGVLPSGH 633

Query: 88  -PVIAKAGDLAALLTNLEDRD----------VLFIDEIHRLSI----------IVEEILY 126
              +++A  +A ++     +           VLFIDE + L+              + L 
Sbjct: 634 LVEVSRADLVAQVIGGTAIKTTEAFNEAIGGVLFIDEAYTLTPEGGSSNDFGREAVDTLL 693

Query: 127 PAMEDFQLD-LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEI 185
             MED + D +++  G SA      +S                 L  RF   I    Y +
Sbjct: 694 KLMEDHREDVVVIAAGYSAEMTSFLVSN--------------PGLASRFTRTIEFTNYSV 739

Query: 186 EDLKTIVQ 193
            DL TI +
Sbjct: 740 TDLVTITE 747


>gi|291550267|emb|CBL26529.1| ATP-dependent metalloprotease FtsH [Ruminococcus torques L2-14]
          Length = 618

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 57/230 (24%), Positives = 89/230 (38%), Gaps = 28/230 (12%)

Query: 26  TLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G+ EA   L   +       +  +  A      L VGPPG GKT LA+ VA E 
Sbjct: 167 TFQDVAGEDEAKELLTEIVDFLHNPQKYTEIGAVCPKGALLVGPPGTGKTLLAKAVAGEA 226

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG           A  +  L     ++   ++FIDEI  +    +   Y   +
Sbjct: 227 NVPFFSISGSEFVEMFVGMGASKVRDLFKQANEKAPCIVFIDEIDTIGKKRDNAGYGGND 286

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E     + K       ++AAT R   L   L    RF   I +   +++
Sbjct: 287 EREQTLNQLLTEMDGFDASKG----VVILAATNRPDSLDPALLRPGRFDRRIPVELPDLK 342

Query: 187 DLKTIVQRGAKLTGL-AVTDEAACEIAMRSRGTPRIAGRL----LRRVRD 231
             + I++  AK   L    D  A   A        +A  +    LR VR+
Sbjct: 343 GREEILKVHAKKIRLGDDIDFNAIARAASGASGAELANMVNEAALRAVRE 392


>gi|229159239|ref|ZP_04287264.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           R309803]
 gi|228624254|gb|EEK81055.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           R309803]
          Length = 612

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 62/248 (25%), Positives = 88/248 (35%), Gaps = 27/248 (10%)

Query: 26  TLEEFTG-----QV--EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G     Q   E    LK   + A+  A     VL VGPPG GKT LA+ VA E 
Sbjct: 139 RFRDVAGADEEKQELVEVVEFLKDPRKFAEVGARIPKGVLLVGPPGTGKTLLARAVAGEA 198

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG       V   A  +  L  N +     ++FIDEI  +       L    +
Sbjct: 199 GVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCIIFIDEIDAVGRQRGAGLGGGHD 258

Query: 131 DFQLD----LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
           + +      L+  +G  A    I      +IAAT R  +L   L    RF   I ++  +
Sbjct: 259 EREQTLNQLLVEMDGFGANEGII------IIAATNRPDILDPALLRPGRFDRQITVDRPD 312

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +   + +++  A+   L                +      LL      A     K I   
Sbjct: 313 VNGREAVLKVHARNKPLDENINLRAIATRTPGFSGADLENLLNEAALVAARQDKKKIDMS 372

Query: 245 IADAALLR 252
             D A  R
Sbjct: 373 DIDEATDR 380


>gi|227489340|ref|ZP_03919656.1| cell division protein FtsH [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227090713|gb|EEI26025.1| cell division protein FtsH [Corynebacterium glucuronolyticum ATCC
           51867]
          Length = 776

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 55/244 (22%), Positives = 88/244 (36%), Gaps = 19/244 (7%)

Query: 26  TLEEFTGQVEACSNL---KVFIEAA----KARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           +  +  G  +A   L   K F++      K  A+    VL  GPPG GKT +A+ VA E 
Sbjct: 176 SFADVAGADDALDELQEIKDFLQDPTIYEKLGAKIPRGVLLYGPPGTGKTLMARAVAGEA 235

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG       V   A  +  L     +    ++FIDEI  +       +    +
Sbjct: 236 GVPFYSISGSDFVEMFVGVGASRVRDLFKQARENSPCIIFIDEIDAVGRQRGSGMGGGHD 295

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
           + +  L   +         +     LIAAT R  +L   L    RF   I +   +++  
Sbjct: 296 EREQTL--NQLLVEMDGFGDREGVILIAATNRPDILDPALLRPGRFDRQIPVVNPDLKGR 353

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           + I++  AK    A   +        +  +      +L              IT +  + 
Sbjct: 354 EKILEVHAKGKPFAPDADIKSLAKRTAGMSGADLANVLNEAALLTARIGGNVITADALEE 413

Query: 249 ALLR 252
           A  R
Sbjct: 414 ATDR 417


>gi|221632324|ref|YP_002521545.1| metalloprotease FtsH [Thermomicrobium roseum DSM 5159]
 gi|310943092|sp|B9KXV3|FTSH1_THERP RecName: Full=ATP-dependent zinc metalloprotease FtsH 1
 gi|221157088|gb|ACM06215.1| metalloprotease FtsH [Thermomicrobium roseum DSM 5159]
          Length = 652

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 61/250 (24%), Positives = 92/250 (36%), Gaps = 24/250 (9%)

Query: 23  RPR-TLEEFTGQVEACSNLKVFIEAAK-------ARAEALDHVLFVGPPGLGKTTLAQVV 74
           RP  T ++  G  EA   L+  +E  K         A     VL VGPPG GKT L++ V
Sbjct: 157 RPTVTFDDVAGVDEAKEELQEIVEFLKYPEKFAALGARIPRGVLLVGPPGTGKTLLSRAV 216

Query: 75  ARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILY 126
           A E GV F S SG           A  +  L    +     ++FIDEI  +       L 
Sbjct: 217 AGEAGVPFFSISGSEFVEMFVGVGASRVRDLFDQAKRNAPCIVFIDEIDAVGRQRGAGLG 276

Query: 127 PAMEDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNF 182
            + ++ +  L  ++ E     S         +IAAT R  +L   L    RF   + L+ 
Sbjct: 277 GSHDEREQTLNQILVEMDGFDSST----NVIVIAATNRPDVLDPALLRPGRFDRQVVLDR 332

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            ++     I++   +   L    +           +      L+      A   + KTI 
Sbjct: 333 PDLHGRLAILKVHTRGKPLESDVDLEDLARQTPGFSGADLENLVNEAAILAARRNKKTIG 392

Query: 243 REIADAALLR 252
           R     A+ R
Sbjct: 393 RRELYEAIDR 402


>gi|260811638|ref|XP_002600529.1| hypothetical protein BRAFLDRAFT_276686 [Branchiostoma floridae]
 gi|229285816|gb|EEN56541.1| hypothetical protein BRAFLDRAFT_276686 [Branchiostoma floridae]
          Length = 718

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 75/227 (33%), Gaps = 20/227 (8%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVAR 76
            T E+  G       L+  ++      +            VLF GPPG GKT LA+ +A 
Sbjct: 388 TTWEDVGGLDNVKKELQELVQYPVEHPDKFLKFGMTPSRGVLFYGPPGCGKTLLAKAIAN 447

Query: 77  ELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPA 128
           E   NF S  GP +          ++  +          VLF DE+  ++          
Sbjct: 448 ECQANFISIKGPELLTMWFGESEANVRDVFDKARQAAPCVLFFDELDSIAKSRGGN--VG 505

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
                 D ++ +  +      +     +I AT R  ++   +    R    I +   +  
Sbjct: 506 DGGGAADRVINQVLTEMDGMTDKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEP 565

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
              +I++   + + +A   +      +    +      + +R    A
Sbjct: 566 SRISILKANLRKSPVAKDVDLGYLAKVTHGFSGADLTEICQRACKLA 612



 Score = 53.2 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 50/261 (19%), Positives = 87/261 (33%), Gaps = 31/261 (11%)

Query: 31  TGQVEACSNLKVFIEAAKARAEALDH--------------VLFVGPPGLGKTTLAQVVAR 76
            G  +     K   +  +     L H              +L  GPPG+GKT +A+ VA 
Sbjct: 115 VGYDDIGGVRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGVGKTLIARAVAN 174

Query: 77  ELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPA 128
           E G  F   +GP I          +L       E     ++FIDEI  ++   ++     
Sbjct: 175 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDEIDAIAPKRDK----- 229

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
                   +V +  +        +   ++AAT R   +   L+   RF   + +   +  
Sbjct: 230 THGEVERRIVSQLLTLMDGLKQRAHVVVMAATNRPNSIDAALRRFGRFDREVDIGIPDAT 289

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
               I+Q   K   LA  D    ++A  + G        L       +    K    ++ 
Sbjct: 290 GRLEILQIHTKNMKLA-DDVDLEQVASETHGHVGSDLAAL-CSEAALQQIREKMDLIDLE 347

Query: 247 DAALLRLAIDKMGFDQLDLRY 267
           D  +    +D +     + RY
Sbjct: 348 DENIDAEVLDSLAVTMENFRY 368


>gi|296131785|ref|YP_003639032.1| ATPase AAA-2 domain protein [Thermincola sp. JR]
 gi|296030363|gb|ADG81131.1| ATPase AAA-2 domain protein [Thermincola potens JR]
          Length = 810

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 52/258 (20%), Positives = 91/258 (35%), Gaps = 37/258 (14%)

Query: 30  FTGQVEACSNLKVFIEAAKAR----AEALDHVLFVGPPGLGKTTLAQVVARE-------- 77
             GQ EA   +   +  A+A        +   +F+GP G+GKT LA+ +A          
Sbjct: 511 VIGQDEAVKAVSRAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAEALFGDEDAM 570

Query: 78  --LGVNFRSTSGPVIAKAG--------DLAALLTNLEDRD---VLFIDEIHRLSIIVEEI 124
             + ++       V    G        D    LT    R    V+ +DEI +    V  I
Sbjct: 571 VRIDMSEYMEKHAVSRLVGAPPGYVGYDEGGQLTEAVRRKPYSVVLLDEIEKAHPEVFNI 630

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           L   +ED +L    G     R+        T+I  T+ VG      +   G         
Sbjct: 631 LLQVLEDGRLTDAKGRTVDFRN--------TVIIMTSNVGAHLIKKEATLGFKTTAQDTN 682

Query: 185 IEDLKTIV----QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
            ++++  V    +R  +   L   DE     +++     +I   +L+ V +  +    + 
Sbjct: 683 YDNMRERVTGELKRTFRPEFLNRIDEIIVFHSLKKEHIKKIVELMLKEVAERMKENDIEI 742

Query: 241 ITREIADAALLRLAIDKM 258
              + A   L +   D+M
Sbjct: 743 EVTDEAKELLAKEGFDEM 760


>gi|261838049|gb|ACX97815.1| gamma and tau subunits of the DNA polymerase III holoenzyme
           [Helicobacter pylori 51]
          Length = 571

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 78/256 (30%), Gaps = 59/256 (23%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA------- 75
           RP+   E  GQ      L + ++  +         LF G  G GKT+ +++ A       
Sbjct: 9   RPKHFSELVGQESVAKTLSLALDNQRLANAY----LFSGLRGSGKTSSSRIFARALMCEE 64

Query: 76  -----------------RELGVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFID 112
                                ++     G       D+  L+             +  ID
Sbjct: 65  GPKAVPCDTCTQCQSALNNHHIDIIEMDGASNRGIDDVRNLIEQTRYKPSFGRYKIFIID 124

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H  +      L   +E+                    S    + ATT    L   +  
Sbjct: 125 EVHMFTTEAFNALLKTLEE------------------PPSHVKFLLATTDALKLPATILS 166

Query: 173 R---FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           R   F          I  LKTI++       ++    A  ++A   +G+ R    LL + 
Sbjct: 167 RTQHFRFKKIPENSVISHLKTILE----KEQVSYETSALEKLAHSGQGSLRDTITLLEQA 222

Query: 230 RDFAEVAHAKTITREI 245
            ++ + A  ++   E+
Sbjct: 223 INYCDNAITESKVAEM 238


>gi|228912805|ref|ZP_04076453.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228925319|ref|ZP_04088416.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228931568|ref|ZP_04094475.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228943872|ref|ZP_04106258.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228983321|ref|ZP_04143535.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229089197|ref|ZP_04220479.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           Rock3-42]
 gi|229119728|ref|ZP_04248990.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           95/8201]
 gi|229136912|ref|ZP_04265540.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           BDRD-ST26]
 gi|229153844|ref|ZP_04281975.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus ATCC
           4342]
 gi|229182460|ref|ZP_04309712.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus BGSC
           6E1]
 gi|228601040|gb|EEK58608.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus BGSC
           6E1]
 gi|228629648|gb|EEK86344.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus ATCC
           4342]
 gi|228646577|gb|EEL02783.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           BDRD-ST26]
 gi|228663753|gb|EEL19331.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           95/8201]
 gi|228694160|gb|EEL47841.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           Rock3-42]
 gi|228776435|gb|EEM24787.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228815829|gb|EEM62064.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228828120|gb|EEM73847.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228834366|gb|EEM79906.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228846865|gb|EEM91869.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 612

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 62/248 (25%), Positives = 88/248 (35%), Gaps = 27/248 (10%)

Query: 26  TLEEFTG-----QV--EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G     Q   E    LK   + A+  A     VL VGPPG GKT LA+ VA E 
Sbjct: 139 RFRDVAGADEEKQELVEVVEFLKDPRKFAEVGARIPKGVLLVGPPGTGKTLLARAVAGEA 198

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG       V   A  +  L  N +     ++FIDEI  +       L    +
Sbjct: 199 GVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCIIFIDEIDAVGRQRGAGLGGGHD 258

Query: 131 DFQLD----LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
           + +      L+  +G  A    I      +IAAT R  +L   L    RF   I ++  +
Sbjct: 259 EREQTLNQLLVEMDGFGANEGII------IIAATNRPDILDPALLRPGRFDRQITVDRPD 312

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +   + +++  A+   L                +      LL      A     K I   
Sbjct: 313 VNGREAVLKVHARNKPLDENINLRAIATRTPGFSGADLENLLNEAALVAARQDKKKIDMS 372

Query: 245 IADAALLR 252
             D A  R
Sbjct: 373 DIDEATDR 380


>gi|255556938|ref|XP_002519502.1| Transitional endoplasmic reticulum ATPase, putative [Ricinus
           communis]
 gi|223541365|gb|EEF42916.1| Transitional endoplasmic reticulum ATPase, putative [Ricinus
           communis]
          Length = 805

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/175 (25%), Positives = 62/175 (35%), Gaps = 35/175 (20%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------------VLFVGPPGLGKTTLA 71
            L+E  G  +     K   +  +     L H              +L  GPPG GKT +A
Sbjct: 201 RLDE-VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIA 259

Query: 72  QVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEE 123
           + VA E G  F   +GP I          +L       E     ++FIDEI  ++   E+
Sbjct: 260 RAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREK 319

Query: 124 ILYPA---MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
                   +    L LM G    A  + I         AT R   +   L+ RFG
Sbjct: 320 THGEVERRIVSQLLTLMDGLKSRAHVIVI--------GATNRPNSIDPALR-RFG 365



 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/255 (16%), Positives = 81/255 (31%), Gaps = 25/255 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVARE 77
           + E+  G       L+  ++      E            VLF GPPG GKT LA+ +A E
Sbjct: 479 SWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANE 538

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
              NF S  GP +          ++  +          VLF DE+  ++      +  A 
Sbjct: 539 CQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDA- 597

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                D ++ +  +            +I AT R  ++   L    R    I +   + + 
Sbjct: 598 -GGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDS 656

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH-----AKTIT 242
              I +   + + ++   +           +      + +R   +A   +      +   
Sbjct: 657 RHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERR 716

Query: 243 REIADAALLRLAIDK 257
           +     A+     D 
Sbjct: 717 QRDNPEAMEEDVEDD 731


>gi|42525835|ref|NP_970933.1| hypothetical protein TDE0319 [Treponema denticola ATCC 35405]
 gi|41815885|gb|AAS10814.1| conserved hypothetical protein [Treponema denticola ATCC 35405]
 gi|325475490|gb|EGC78671.1| hypothetical protein HMPREF9353_00252 [Treponema denticola F0402]
          Length = 335

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 75/219 (34%), Gaps = 29/219 (13%)

Query: 30  FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPV 89
             GQ E        IE       A  HVL  G PGL KT + +  A    V+F+      
Sbjct: 21  IVGQQE-------LIEGILTAYIAGGHVLLEGVPGLAKTLIVKTFAELSNVSFKRIQFTP 73

Query: 90  IAKAGDLAALL--------TNLEDRD----VLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137
                DL   L         ++        ++  DEI+R    V+  L  AM + Q+   
Sbjct: 74  DLLPADLIGTLIYQQSIGKFSVRRGPVFANIVLADEINRAPAKVQSALLEAMAEGQVT-- 131

Query: 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPL----QDRFGIPIRLNFYEIEDLKTIVQ 193
           +GE     S  +    F L          T PL     DRF + + + +  IE+   IV 
Sbjct: 132 IGEN----SFSLPAPFFVLATQNPIEQEGTYPLPEAELDRFLLKLFVPYPSIEEEINIVN 187

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF 232
           + + L       +++      +  TP     L   V   
Sbjct: 188 KFSSLRPSQNLGQSSNISPAEAVLTPENLETLRNAVEQV 226


>gi|15836698|ref|NP_297386.1| cell division protein [Xylella fastidiosa 9a5c]
 gi|9104871|gb|AAF82906.1|AE003863_8 cell division protein [Xylella fastidiosa 9a5c]
          Length = 645

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 54/246 (21%), Positives = 88/246 (35%), Gaps = 23/246 (9%)

Query: 26  TLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  EA   +   +       +  K   +    VL VGPPG GKT LA+ +A E 
Sbjct: 163 TFADVAGCDEAKEEVGELVDFLRDPTKFTKLGGKIPRGVLMVGPPGTGKTLLAKAIAGEA 222

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  +    +     ++FIDEI  +       L    +
Sbjct: 223 KVPFFSISGSDFVEMFVGVGASRVRDMFEQAKKHAPCIIFIDEIDAVGRHRGAGLGGGHD 282

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E       +       +IAAT R  +L   L    RF   + +   +++
Sbjct: 283 EREQTLNQLLVEMDGFEGGEG----VIVIAATNRPDVLDPALLRPGRFDRQVVVALPDVK 338

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I+    +   LA   E           +      L      FA  ++ K +     
Sbjct: 339 GREQILGVHMRKLLLANDVEPLVIARGTPGFSGADLANLCNEAALFAARSNEKEVRMNHF 398

Query: 247 DAALLR 252
           DAA  +
Sbjct: 399 DAARDK 404


>gi|45643123|ref|NP_002524.2| nuclear valosin-containing protein-like isoform 1 [Homo sapiens]
 gi|32699415|sp|O15381|NVL_HUMAN RecName: Full=Nuclear valosin-containing protein-like; Short=NVLp;
           Short=Nuclear VCP-like protein
 gi|2406565|gb|AAB70457.1| nuclear VCP-like protein NVLp.2 [Homo sapiens]
 gi|119590120|gb|EAW69714.1| nuclear VCP-like, isoform CRA_a [Homo sapiens]
          Length = 856

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 45/202 (22%), Positives = 68/202 (33%), Gaps = 16/202 (7%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--V 108
           VL  GPPG GKT LA  +A EL +     + P I           L  L          +
Sbjct: 301 VLLHGPPGCGKTLLAHAIAGELDLPILKVAAPEIVSGVSGESEQKLRELFEQAVSNAPCI 360

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +FIDEI  ++   E             L+              +R  +I AT R   L  
Sbjct: 361 IFIDEIDAITPKREVASKDMERRIVAQLLTCMDDLNNVAAT--ARVLVIGATNRPDSLDP 418

Query: 169 PLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
            L+   RF   I L   +    + I+Q   +   L      A +    +  TP   G  L
Sbjct: 419 ALRRAGRFDREICLGIPDEASRERILQTLCRKLRLPQ----AFDFCHLAHLTPGFVGADL 474

Query: 227 RRVRDFAEVAHAKTITREIADA 248
             +   A +     +  ++ + 
Sbjct: 475 MALCREAAMCAVNRVLMKLQEQ 496



 Score = 43.5 bits (101), Expect = 0.046,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 8/76 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDRD------V 108
           VL  GPPG GKT LA+ VA E G+NF S  GP +     G+    +  +  R       V
Sbjct: 618 VLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCV 677

Query: 109 LFIDEIHRLSIIVEEI 124
           +F DE+  L     + 
Sbjct: 678 IFFDEVDALCPRRSDR 693


>gi|71275933|ref|ZP_00652216.1| Peptidase M41, FtsH [Xylella fastidiosa Dixon]
 gi|71900019|ref|ZP_00682164.1| Peptidase M41, FtsH [Xylella fastidiosa Ann-1]
 gi|170729313|ref|YP_001774746.1| cell division protein [Xylella fastidiosa M12]
 gi|71163310|gb|EAO13029.1| Peptidase M41, FtsH [Xylella fastidiosa Dixon]
 gi|71730229|gb|EAO32315.1| Peptidase M41, FtsH [Xylella fastidiosa Ann-1]
 gi|167964106|gb|ACA11116.1| cell division protein [Xylella fastidiosa M12]
          Length = 645

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 54/246 (21%), Positives = 88/246 (35%), Gaps = 23/246 (9%)

Query: 26  TLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  EA   +   +       +  K   +    VL VGPPG GKT LA+ +A E 
Sbjct: 163 TFADVAGCDEAKEEVGELVDFLRDPTKFTKLGGKIPRGVLMVGPPGTGKTLLAKAIAGEA 222

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  +    +     ++FIDEI  +       L    +
Sbjct: 223 KVPFFSISGSDFVEMFVGVGASRVRDMFEQAKKHAPCIIFIDEIDAVGRHRGAGLGGGHD 282

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E       +       +IAAT R  +L   L    RF   + +   +++
Sbjct: 283 EREQTLNQLLVEMDGFEGGEG----VIVIAATNRPDVLDPALLRPGRFDRQVVVALPDVK 338

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I+    +   LA   E           +      L      FA  ++ K +     
Sbjct: 339 GREQILGVHMRKLLLANDVEPLVIARGTPGFSGADLANLCNEAALFAARSNEKEVRMNHF 398

Query: 247 DAALLR 252
           DAA  +
Sbjct: 399 DAARDK 404


>gi|47570189|ref|ZP_00240843.1| cell division protein FtsH [Bacillus cereus G9241]
 gi|47553133|gb|EAL11530.1| cell division protein FtsH [Bacillus cereus G9241]
          Length = 633

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 62/248 (25%), Positives = 88/248 (35%), Gaps = 27/248 (10%)

Query: 26  TLEEFTG-----QV--EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G     Q   E    LK   + A+  A     VL VGPPG GKT LA+ VA E 
Sbjct: 160 RFRDVAGADEEKQELVEVVEFLKDPRKFAEVGARIPKGVLLVGPPGTGKTLLARAVAGEA 219

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG       V   A  +  L  N +     ++FIDEI  +       L    +
Sbjct: 220 GVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCIIFIDEIDAVGRQRGAGLGGGHD 279

Query: 131 DFQLD----LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
           + +      L+  +G  A    I      +IAAT R  +L   L    RF   I ++  +
Sbjct: 280 EREQTLNQLLVEMDGFGANEGII------IIAATNRPDILDPALLRPGRFDRQITVDRPD 333

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +   + +++  A+   L                +      LL      A     K I   
Sbjct: 334 VNGREAVLKVHARNKPLDENINLRAIATRTPGFSGADLENLLNEAALVAARQDKKKIDMS 393

Query: 245 IADAALLR 252
             D A  R
Sbjct: 394 DIDEATDR 401


>gi|218885562|ref|YP_002434883.1| ATP-dependent Clp protease ATP-binding subunit clpA [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218756516|gb|ACL07415.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 816

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 47/168 (27%), Positives = 62/168 (36%), Gaps = 31/168 (18%)

Query: 9   SRNVSQEDADISLLRPRTLEE-----FTGQVEACSNLKVFI---EAAKARAEALD-HVLF 59
           SR VS  D D   LR  TL+E       GQ  A   L   I    A   R +      LF
Sbjct: 441 SRTVSSSDRD--RLR--TLDEDLRNVVFGQDAAVGILSRAILRARAGLGREDRPTGSFLF 496

Query: 60  VGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA---------------GDLAALLTNL- 103
            GP G+GKT LA+ +A  +G+ F         +                 D   LLT   
Sbjct: 497 YGPTGVGKTELARRLAEVMGIGFLRYDMSEYMEKHSVSRLIGAPPGYVGFDQGGLLTEAI 556

Query: 104 --EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKI 149
             +   VL +DEI +    +  IL   M+   L    G     R+V +
Sbjct: 557 RKQPYTVLLLDEIEKAHPDIFNILLQVMDYATLTDNTGRKADFRNVVL 604


>gi|323703640|ref|ZP_08115283.1| ATP-dependent protease La [Desulfotomaculum nigrificans DSM 574]
 gi|323531412|gb|EGB21308.1| ATP-dependent protease La [Desulfotomaculum nigrificans DSM 574]
          Length = 810

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 56/299 (18%), Positives = 104/299 (34%), Gaps = 50/299 (16%)

Query: 28  EEFTGQVE--ACSNLKVFIE--AAKARAEAL--DHVLFVGPPGLGKTTLAQVVARELGVN 81
           E+   Q         +  IE  A +  A+ +    +  VGPPG+GKT+L + +AR L   
Sbjct: 314 EQILDQDHYGLKVPKERIIEYLAIRKLAKKMKGPILCLVGPPGVGKTSLGRSIARALERK 373

Query: 82  FRSTSGPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSI------ 119
           F   S   +    ++                           V  +DEI +++       
Sbjct: 374 FIRISLGGVRDEAEIRGHRRTYVGAMPGRVIQGMRQAGSKNPVFLLDEIDKMASDFRGDP 433

Query: 120 --IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIP 177
              + E+L P       D  + E P       +LS    I     +  +  PL DR  + 
Sbjct: 434 AAALLEVLDPEQNSTFSDHYI-ESP------FDLSNVMFITTANNMWNIPRPLLDRMEV- 485

Query: 178 IRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237
           I+++ Y  E+   I +R   L    + +    E  +           +L+ +R++   + 
Sbjct: 486 IQISGYTEEEKLEIAKR--HLLPKQIKEHGLTEEMLTVSE-----NTILKVIREYTRESG 538

Query: 238 AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAI 296
            + + R +A           +G     ++  T     F    +GI     G++E  D +
Sbjct: 539 VRNLERNLASLCRKAAKKIVVGEAAK-VKITTQNLEQF----LGIPKYRYGVAEQNDEV 592


>gi|325954172|ref|YP_004237832.1| ATP-dependent metalloprotease FtsH [Weeksella virosa DSM 16922]
 gi|323436790|gb|ADX67254.1| ATP-dependent metalloprotease FtsH [Weeksella virosa DSM 16922]
          Length = 670

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 56/252 (22%), Positives = 86/252 (34%), Gaps = 32/252 (12%)

Query: 25  RTLEEFTGQVEACSN-------LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
            T ++  G   A          LK   +  K   +     L VGPPG GKT LA+ VA E
Sbjct: 193 TTFKDVAGLEGAKEEIEEIVDFLKNPTKFTKLGGKIPKGALLVGPPGTGKTLLAKAVAGE 252

Query: 78  LGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM 129
             V F S SG       V   A  +  L  N + +   ++FIDEI  +     +  +   
Sbjct: 253 AKVPFFSLSGSDFVEMFVGVGASRVRDLFANAKAKSPSIIFIDEIDAIGRARGKNNFTGS 312

Query: 130 EDFQ-------LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRL 180
            D +       L  M G G          S   +IAAT R  +L   L    RF   I +
Sbjct: 313 NDERENTLNQLLTEMDGFGTE--------SNVIVIAATNRADILDKALMRPGRFDRIIHV 364

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           +  E+ + + I +   +   L    +           +      +       A       
Sbjct: 365 DLPELNEREAIFRVHLRPLKLGEDVDVKFLAKQTPGFSGADIFNVCNEAALVAARKGKDV 424

Query: 241 ITREIADAALLR 252
           + ++    A+ R
Sbjct: 425 VEKQDFLDAVDR 436


>gi|300710704|ref|YP_003736518.1| replication factor C large subunit [Halalkalicoccus jeotgali B3]
 gi|299124387|gb|ADJ14726.1| replication factor C large subunit [Halalkalicoccus jeotgali B3]
          Length = 482

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 42/111 (37%), Gaps = 13/111 (11%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
                RP TL E  G  +A    + + E+ +   +A   V+  G PG+GKT+ A  +A +
Sbjct: 4   WTETYRPSTLSEVRGNDKARDAFREWAESWEDHQKA---VILHGSPGVGKTSAAHALAND 60

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLED----------RDVLFIDEIHRLS 118
           LG      +     KA  +  +                R ++ +DE     
Sbjct: 61  LGWPTIELNASDQRKADIVKRIAGEAAKSGTLTGGTAGRRLVILDEADNFH 111


>gi|291298362|ref|YP_003509640.1| ATP-dependent metalloprotease FtsH [Stackebrandtia nassauensis DSM
           44728]
 gi|290567582|gb|ADD40547.1| ATP-dependent metalloprotease FtsH [Stackebrandtia nassauensis DSM
           44728]
          Length = 671

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 67/247 (27%), Positives = 98/247 (39%), Gaps = 24/247 (9%)

Query: 24  PR-TLEEFTGQVEACSNL---KVFIEAAKA----RAEALDHVLFVGPPGLGKTTLAQVVA 75
           P+ T ++  G  EA   L   K F++         A+    VL  GPPG GKT LA+ VA
Sbjct: 175 PKATFDDVAGANEAVEELQEIKDFLQNPAKYQALGAKIPKGVLLFGPPGTGKTLLARAVA 234

Query: 76  RELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYP 127
            E GV F S SG       V   A  +  L    ++    ++F+DEI  +       L  
Sbjct: 235 GEAGVPFYSISGSDFVEMFVGVGASRVRDLFQQAKENAPAIVFVDEIDAVGRHRGAGLGG 294

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
             ++ +  L   +         N     LIAAT R  +L   L    RF   I ++  + 
Sbjct: 295 GHDEREQTL--NQLLVEMDGFDNKGGVILIAATNRPDILDPALLRPGRFDRQIPVDAPDK 352

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           E  + I+Q  A+  G         E   R   TP  +G  L  V + A +  A+   + I
Sbjct: 353 EGRQAILQVHAR--GKPFAPNVDMETIARR--TPGFSGADLANVINEAALLTARANEKAI 408

Query: 246 ADAALLR 252
           +  AL  
Sbjct: 409 SGDALEE 415


>gi|289579864|ref|YP_003478330.1| ATPase AAA, CDC48 subfamily [Natrialba magadii ATCC 43099]
 gi|289529417|gb|ADD03768.1| AAA family ATPase, CDC48 subfamily [Natrialba magadii ATCC 43099]
          Length = 742

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 60/294 (20%), Positives = 105/294 (35%), Gaps = 36/294 (12%)

Query: 16  DADISLLR------PR-TLEEFTG--------QVEACSNLKVFIEAAKARAEALDHVLFV 60
           + + S +R      P+ + ++  G        Q      L      ++   +    VL  
Sbjct: 443 EVEPSAMREVLVELPKISWDDVGGLHDAKEQVQESVEWPLNNPGRFSRLGIDPPAGVLLY 502

Query: 61  GPPGLGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDR------DVLFID 112
           GPPG GKT +A+ VA E   NF S  GP  +    G+    +     +       V+F D
Sbjct: 503 GPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFRKARQVSPTVIFFD 562

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+  L+          + +  ++ ++ E      ++       +I AT R  ++   L  
Sbjct: 563 ELDALAPGRGGETGSNVSERVVNQLLTELDGLEEME----DVMVIGATNRPDMIDPALLR 618

Query: 173 --RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR-- 228
             RF   + +   +++  + I+    + T LA  D    EIA  + G        + R  
Sbjct: 619 SGRFDRLVMIGEPDVDGRERILDIHTQETPLA-ADVTLREIAEITDGYVGSDLESIAREA 677

Query: 229 -VRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVG 281
            +    E   A  +       A+  +    +  D LD  Y   I   F GG  G
Sbjct: 678 AIEALREDHEADIVEMRHFRQAMENVRP-TITDDILD--YYERIEEEFKGGSSG 728



 Score = 52.4 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 53/200 (26%), Positives = 77/200 (38%), Gaps = 25/200 (12%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLT 101
           K   E    VL  GPPG GKT LA+ VA E   +F S +GP I           L  +  
Sbjct: 217 KLGIEPPQGVLLHGPPGTGKTLLAKAVANETSASFFSIAGPEIISKYYGESEQQLREIFE 276

Query: 102 NLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMV-GEGPSARSVKINLSRFTLIA 158
           +  +    ++FIDE+  ++   E++           L+   +G  AR       +  +IA
Sbjct: 277 DASEESPAIIFIDELDSIAPKREDVTGEVERRVVAQLLTMMDGLEAR------GQVIVIA 330

Query: 159 ATTRVGLLTNPLQ-----DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEI-- 211
           AT RV  +   L+     DR       +    E++  I  RG  L+        A E   
Sbjct: 331 ATNRVDSVDPALRRPGRFDREIEIGVPDEVGREEILQIHTRGMPLSDDVALSHLADETHG 390

Query: 212 ---AMRSRGTPRIAGRLLRR 228
              A     T   A + LRR
Sbjct: 391 FVGADIESLTKEAAMKALRR 410


>gi|224066809|ref|XP_002302226.1| predicted protein [Populus trichocarpa]
 gi|222843952|gb|EEE81499.1| predicted protein [Populus trichocarpa]
          Length = 363

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 70/240 (29%), Gaps = 40/240 (16%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
             +   RP++L +     +    +             L H+L  GPPG GKT+    VAR
Sbjct: 41  PWVEKYRPQSLADVAAHRDIIDTIDRL-----TSENRLPHLLLYGPPGTGKTSTILAVAR 95

Query: 77  -----ELGVNFRSTSGPVIAKAGDLAALLTNLEDR-----------DVLFIDEIHRLSII 120
                +        +         +   + +                ++ +DE   ++  
Sbjct: 96  KLYGAQYHNMILELNASDDRGIDVVRKQIQDFASTQSFSFGAKASVKLVLLDEADAMTKD 155

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180
            +  L   +E +       +      +               V  +   LQ R     R 
Sbjct: 156 AQFALRRVIEKY------TKNTRFALIC------------NHVNKIIPALQSRC-TRFRF 196

Query: 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
              +   +   ++   +  GL V +     +   S G  R A  +L+     ++    +T
Sbjct: 197 APLDPMHVGERLKHVIEAEGLDVPESGLEALKCLSNGDMRKALNILQSTHMASQQITEET 256


>gi|254410318|ref|ZP_05024097.1| ATP-dependent metallopeptidase HflB subfamily [Microcoleus
           chthonoplastes PCC 7420]
 gi|196182524|gb|EDX77509.1| ATP-dependent metallopeptidase HflB subfamily [Microcoleus
           chthonoplastes PCC 7420]
          Length = 627

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 60/273 (21%), Positives = 99/273 (36%), Gaps = 23/273 (8%)

Query: 27  LEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVARELG 79
            ++  G  EA   L+  +   K         A     VL VGPPG GKT LA+ +A E G
Sbjct: 171 FDDVAGIQEAKEELQEVVTFLKQPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAG 230

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMED 131
           V F S SG           A  +  L    ++    ++FIDEI  +       +    ++
Sbjct: 231 VPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCLIFIDEIDAVGRQRGAGIGGGNDE 290

Query: 132 FQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            +  L  ++ E               +IAAT R  +L + L    RF   + ++  +++ 
Sbjct: 291 REQTLNQLLTEMDGFEGNTG----IIIIAATNRPDVLDSALLRPGRFDRQVIVDAPDLKG 346

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
              I++  A+   LA               T      LL            + IT    +
Sbjct: 347 RIGILEVHARNKKLASEISIEAIARRTPGFTGADLANLLNEAAILTARRRKEAITMLEIN 406

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV 280
            A+ R+     G   +D +   +IA +  G  +
Sbjct: 407 DAVDRVVAGMEGTPLVDSKSKRLIAYHEVGHAI 439


>gi|113969363|ref|YP_733156.1| membrane protease FtsH catalytic subunit [Shewanella sp. MR-4]
 gi|113884047|gb|ABI38099.1| membrane protease FtsH catalytic subunit [Shewanella sp. MR-4]
          Length = 657

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 93/250 (37%), Gaps = 23/250 (9%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAA-------KARAEALDHVLFVGPPGLGKTTLAQVVARE 77
            T  +  G  EA   +K  ++         K        VL VGPPG GKT LA+ +A E
Sbjct: 159 TTFADVAGCDEAKEEVKELVDYLRDPTKFQKLGGRIPTGVLMVGPPGTGKTLLAKAIAGE 218

Query: 78  LGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
             V F + SG       V   A  +  +    +     ++FIDEI  +       L    
Sbjct: 219 SKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKSAPCIIFIDEIDAVGRQRGAGLGGGH 278

Query: 130 EDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           ++ +  L  M+ E       +       +IAAT R  +L + L    RF   + +   ++
Sbjct: 279 DEREQTLNQMLVEMDGFEGNEG----IIVIAATNRPDVLDSALLRPGRFDRQVVVGLPDV 334

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
              + I++   +   L+   +A+         +      L+     FA   + + +  E 
Sbjct: 335 RGREQILKVHMRKVPLSEDVKASVIARGTPGFSGADLANLVNEAALFAARGNRRVVGMEE 394

Query: 246 ADAALLRLAI 255
            + A  ++ +
Sbjct: 395 FERAKDKIMM 404


>gi|78777661|ref|YP_393976.1| ATP-dependent protease ATP-binding subunit [Sulfurimonas
           denitrificans DSM 1251]
 gi|78498201|gb|ABB44741.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Sulfurimonas
           denitrificans DSM 1251]
          Length = 414

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/153 (26%), Positives = 64/153 (41%), Gaps = 31/153 (20%)

Query: 3   DREGLLSRNVSQEDADISLLRPRTL-----EEFTGQVEACSNLKVFIEAAKAR------- 50
           D+    S++ +  D + +L+ P+ L     +   GQ  A   L V +     R       
Sbjct: 43  DKFLNSSKDANLTDENSTLMTPKELNLFLADYIIGQERARKLLSVAVYNHYKRIFKTHTT 102

Query: 51  -----AEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLT 101
                  A  +VL +GP G GKT +AQ +AR L V         + +AG    D+  +LT
Sbjct: 103 KDDDTEIAKSNVLLIGPTGSGKTLMAQTIARVLNVPIAIADATSLTEAGYVGEDVENILT 162

Query: 102 NL----------EDRDVLFIDEIHRLSIIVEEI 124
            L            R ++FIDEI ++S + E  
Sbjct: 163 KLLQAADGDVERAQRGIVFIDEIDKISRMSENR 195


>gi|260939716|ref|XP_002614158.1| hypothetical protein CLUG_05644 [Clavispora lusitaniae ATCC 42720]
 gi|238852052|gb|EEQ41516.1| hypothetical protein CLUG_05644 [Clavispora lusitaniae ATCC 42720]
          Length = 805

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 47/243 (19%), Positives = 85/243 (34%), Gaps = 37/243 (15%)

Query: 32  GQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90
           G  E    +  FI   K   +    +L   GPPG GKT++A+ +A  L   +   +   I
Sbjct: 547 GLKEVKERILEFISLGKVSGKVDGKILCLAGPPGTGKTSIAKSIAEALDRRYVRIAMGGI 606

Query: 91  AKAGD----------------LAALLTNLEDRDVLFIDEIHRLSIIVE--------EILY 126
               +                +AAL +      ++ IDEI +L +           EIL 
Sbjct: 607 QDVHEVKGHRRTYIGSIPGRIIAALKSAKTSNPLMLIDEIDKLDLSRSGGAASAFLEILD 666

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186
           P   +  +D  +        VK++LS+   +     +G +  PL+DR  +     +   E
Sbjct: 667 PEQNNAFVDNYI-------DVKVDLSKVLFVCTANYLGNIPGPLRDRMEVIDVSGYTNNE 719

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
            L+      A+   +    + A                L+ +    + + + K +   I 
Sbjct: 720 KLE-----IARKHLIPQAAKKAGLDESHVVIPEETITTLIEKYCRESGLRNIKKLITRIF 774

Query: 247 DAA 249
             A
Sbjct: 775 SKA 777


>gi|254567361|ref|XP_002490791.1| Mitochondrial respiratory chain complexes assembly protein RCA1
           [Pichia pastoris GS115]
 gi|238030587|emb|CAY68511.1| Mitochondrial respiratory chain complexes assembly protein RCA1
           [Pichia pastoris GS115]
 gi|328351173|emb|CCA37573.1| AFG3 family protein [Pichia pastoris CBS 7435]
          Length = 839

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 53/249 (21%), Positives = 88/249 (35%), Gaps = 24/249 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
             ++  G  EA   +  F++  K         A+     +  GPPG GKT LA+  A E 
Sbjct: 360 KFDDVAGCDEAKEEIMEFVKFLKNPAKYERLGAKIPRGAILSGPPGTGKTLLAKATAGEA 419

Query: 79  GVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           GV F S SG            ++  DL           ++F+DEI  +     +  +   
Sbjct: 420 GVPFYSVSGSEFVEMFVGVGASRVRDLFKTAREDAP-SIIFVDEIDAIGKSRSKNSFSGS 478

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            D + +  + +         N     ++A T R  +L   L    RF   I L+  E+E 
Sbjct: 479 ND-ERENTLNQLLVEMDGFSNTDHVVVLAGTNRSDVLDAALLRPGRFDRKIHLDNPELEG 537

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAG----RLLRRVRDFAEVAHAKTITR 243
            K I     K   L+  ++        +  TP  +G             A   +A  +  
Sbjct: 538 RKDIFGVHLKKLTLSADEDMDDLKGRLATLTPGFSGADIANCCNEAALIAARNNATHVEL 597

Query: 244 EIADAALLR 252
           +  + A+ R
Sbjct: 598 KHFEMAIER 606


>gi|218187789|gb|EEC70216.1| hypothetical protein OsI_00975 [Oryza sativa Indica Group]
          Length = 841

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 85/257 (33%), Gaps = 39/257 (15%)

Query: 9   SRNVSQEDADISLLRPR---------TLEEFTGQVEACSNLKVFIEAAKARAEALDH--- 56
           +  +  ++     +RP          T ++     +   +L+  +     R +       
Sbjct: 504 APEMLPDNEFEKRIRPEVIPANEIGVTFDDIGALSDIKESLQELVMLPLRRPDLFKGGLL 563

Query: 57  -----VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLED 105
                +L  GPPG GKT LA+ +A E   +F + S   I          ++ AL T    
Sbjct: 564 KPCRGILLFGPPGTGKTMLAKAIANEAQASFINVSMSTITSKWFGEDEKNVRALFTLAAK 623

Query: 106 --RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSR----FTLIAA 159
               ++F+DE+  +               ++     +          LSR      ++AA
Sbjct: 624 VSPTIIFVDEVDSML-GQRNRAGEHEAMRKI-----KNEFMTHWDGLLSRPDQKILVLAA 677

Query: 160 TTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTP 219
           T R   L   +  RF   I +    +E  + I++    L      D       + +  T 
Sbjct: 678 TNRPFDLDEAIIRRFERRIMVGLPSLESRELILR---SLLSKEKVDGGLDYKEL-ATMTE 733

Query: 220 RIAGRLLRRVRDFAEVA 236
             +G  L+ +   A   
Sbjct: 734 GYSGSDLKNLCTTAAYR 750


>gi|209881462|ref|XP_002142169.1| ATPase, AAA family protein [Cryptosporidium muris RN66]
 gi|209557775|gb|EEA07820.1| ATPase, AAA family protein [Cryptosporidium muris RN66]
          Length = 626

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/202 (21%), Positives = 83/202 (41%), Gaps = 20/202 (9%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--- 107
           +LF GPPG GKTT A+++++   +     S   I           LA +    +  D   
Sbjct: 404 ILFEGPPGTGKTTSARIISKVAKIPLLYVSLENIISKWYGESEQKLAQVFNLAKQFDNGC 463

Query: 108 VLFIDEIHRLSIIVEEILYPAMEDFQL-DLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
           ++FIDEI  L+   +          ++  +++ +     ++K    +  LI AT R   +
Sbjct: 464 IIFIDEIDTLASSRDNTFNMHEGSKRILSVLLRKLDGFDTIK---DKILLICATNRRNDI 520

Query: 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
                +R    I  +  + ++ K I Q+ AK             ++  S+ + +++GR +
Sbjct: 521 DQAFINRIDSTIYFHLPDEKERKAIFQQYAKHLNDEQ-------LSELSKLSNKLSGRAI 573

Query: 227 RRVRDFAEVAHAKTITREIADA 248
           R V   AE   A  I ++    
Sbjct: 574 RHVCLEAEREWAANILKKGDQE 595


>gi|185177972|pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
 gi|185177973|pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
 gi|185177974|pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
 gi|185177975|pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
 gi|185177976|pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
 gi|185177977|pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
 gi|185177978|pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
 gi|185177979|pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
 gi|185177980|pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
 gi|185177981|pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
 gi|185177982|pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
 gi|185177983|pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
 gi|185177984|pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
 gi|185177985|pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
          Length = 301

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 20/197 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVARE 77
           T E+  G  +    L+  ++      +            VLF GPPG GKT LA+ +A E
Sbjct: 13  TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 72

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
              NF S  GP +          ++  +          VLF DE+  ++           
Sbjct: 73  CQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGN--IGD 130

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                D ++ +  +            +I AT R  ++   +    R    I +   + + 
Sbjct: 131 GGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKS 190

Query: 188 LKTIVQRGAKLTGLAVT 204
              I++   + + +A  
Sbjct: 191 RVAILKANLRKSPVAKD 207


>gi|308800034|ref|XP_003074798.1| rfc5 replication factor C subunit 5 (36kDa), probable (IC)
           [Ostreococcus tauri]
 gi|119358795|emb|CAL52056.2| rfc5 replication factor C subunit 5 (36kDa), probable (IC)
           [Ostreococcus tauri]
          Length = 341

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/216 (17%), Positives = 66/216 (30%), Gaps = 28/216 (12%)

Query: 8   LSRNVSQED--ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGL 65
           +S   S E         RP  L E          ++ F  AA  R   L H+LF GPPG 
Sbjct: 5   VSAEESTEKHLPWTEKYRPLNLSEVVAHETIIDVIRKF--AANGR---LPHLLFHGPPGT 59

Query: 66  GKTTLAQVVARE-----LGVNFRSTSGPVIAKAGDLAALLTNL--------EDRDVLFID 112
           GKT+    + RE             +         +   + +             ++ +D
Sbjct: 60  GKTSTVLALTRELYESNHSNMVLELNASDSRGINIVRDEIQSFASTARPFSSAFKLVIMD 119

Query: 113 EIHRLSIIVEEILYPAMEDFQ-------LDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
           E   L+   +  L   ME +        +     +   A   +    RF  + A   +  
Sbjct: 120 ECDSLTKDAQFALRRIMEKYAQHTRFCLICNYASKIIPAIQSRCTKFRFAPVPAEAMLQR 179

Query: 166 LTNPLQDRFGIPIRLNFYEIEDLKT-IVQRGAKLTG 200
           L + +          +   I+ L    ++R   +  
Sbjct: 180 LRHVVCSERVQISGASLQTIQRLGEGDMRRSLNVLQ 215


>gi|51894333|ref|YP_077024.1| cell division protein [Symbiobacterium thermophilum IAM 14863]
 gi|81387870|sp|Q67JH0|FTSH3_SYMTH RecName: Full=ATP-dependent zinc metalloprotease FtsH 3
 gi|51858022|dbj|BAD42180.1| cell division protein [Symbiobacterium thermophilum IAM 14863]
          Length = 626

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 58/246 (23%), Positives = 88/246 (35%), Gaps = 23/246 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEAL-------DHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  E    L   ++  K     L         VL  GPPG GKT LA+ VA E 
Sbjct: 155 TFDDVAGIDEVKEELAEIVDFLKHPKRYLELGARIPKGVLLYGPPGTGKTLLAKAVAGEA 214

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG       V   A  +  L    +     ++FIDEI  +            +
Sbjct: 215 GVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNSPCIVFIDEIDAVGRQRGAGYGGGHD 274

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E     + +       +IAAT R  +L   L    RF   I ++  +++
Sbjct: 275 EREQTLNQLLVEMDGFSANEG----IIIIAATNRPDVLDPALLRPGRFDRQIVIDRPDLK 330

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
               I Q  AK   L    +           T      L+      A     K I+ +  
Sbjct: 331 GRLAIFQVHAKGKPLEPDVDLEVLAKRTPGFTGADIANLMNEAALLAARRRKKKISMQDV 390

Query: 247 DAALLR 252
           + A+ R
Sbjct: 391 EDAIDR 396


>gi|148259383|ref|YP_001233510.1| ATP-dependent metalloprotease FtsH [Acidiphilium cryptum JF-5]
 gi|326402604|ref|YP_004282685.1| ATP-dependent protease FtsH [Acidiphilium multivorum AIU301]
 gi|146401064|gb|ABQ29591.1| membrane protease FtsH catalytic subunit [Acidiphilium cryptum
           JF-5]
 gi|325049465|dbj|BAJ79803.1| ATP-dependent protease FtsH [Acidiphilium multivorum AIU301]
          Length = 641

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 90/249 (36%), Gaps = 23/249 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAK-------ARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T E+  G  EA   L+  ++  +          +    VL VGPPG GKT LA+ +A E 
Sbjct: 155 TFEDVAGIEEAKGELQEIVDFLRDPQKFQRLGGKIPKGVLLVGPPGTGKTLLARAIAGEA 214

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F + SG       V   A  +  +    +     ++FIDEI  +       L    +
Sbjct: 215 NVPFFTISGSDFVEMFVGVGASRVRDMFEQGKKNAPCIIFIDEIDAVGRHRGAGLGGGND 274

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  M+ E     S +       LIAAT R  +L   L    RF   + +   ++ 
Sbjct: 275 EREQTLNQMLVEMDGFESNEG----VILIAATNRPDVLDPALLRPGRFDRQVVVPNPDVN 330

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++   +   LA   +           +      L+      A     + +     
Sbjct: 331 GRERILKVHMRKVPLAADVDPKVIARGTPGFSGADLANLVNEAALLAARMGKRVVAMAEF 390

Query: 247 DAALLRLAI 255
           + A  ++ +
Sbjct: 391 EYAKDKVMM 399


>gi|295094966|emb|CBK84057.1| ATP-dependent metalloprotease FtsH [Coprococcus sp. ART55/1]
          Length = 606

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 90/244 (36%), Gaps = 22/244 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE-------ALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G+ EA  NL   +E      +           +L VGPPG GKT LA+ VA E 
Sbjct: 166 KFTDVAGEDEAKENLTEIVEYLHNPGKYKEIGASMPKGILLVGPPGTGKTMLAKAVAGEA 225

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG           A  +  L    +++   ++FIDEI  +    +  +    E
Sbjct: 226 NVPFFSMSGSEFVEMFVGMGASKVRDLFQQAKEKAPCIVFIDEIDAIGKKRDGQIGGNDE 285

Query: 131 -DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            +  L+ ++ E               ++AAT R   L   L    RF   + +   +++ 
Sbjct: 286 REQTLNQLLTEMDGFEGNNG----VIILAATNRPDSLDPALLRPGRFDRRVPVELPDLKG 341

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            + I++  AK   +    +      M S  +      ++      A  A    +T+   +
Sbjct: 342 REDILKVHAKKVKIGDNVDFNKIARMASGASGAELANIVNEAALRAVRAGRGFVTQADME 401

Query: 248 AALL 251
            ++ 
Sbjct: 402 ESIE 405


>gi|255954781|ref|XP_002568143.1| Pc21g11110 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211589854|emb|CAP96008.1| Pc21g11110 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1634

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 48/237 (20%), Positives = 83/237 (35%), Gaps = 37/237 (15%)

Query: 26  TLEEFTGQVEACSNLKVFIEA--------AKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
             +   G       LK  +           + +      VLF GPPG GKT +A+ +A  
Sbjct: 560 NFDHVGGLQGHIDQLKEMVSLPLLYPEIFQRFKITPPRGVLFHGPPGTGKTLMARALANS 619

Query: 78  LGVNFRSTSGPVIAKAGDLAALLTNLEDR-------------DVLFIDEIHRLSIIV--- 121
           +    R  +  +   A  L+  +   E +              ++F DEI  L+ +    
Sbjct: 620 VSSEGRKVTFYMRKGADALSKWVGEAERQLRLLFEEARKNQPSIIFFDEIDGLAPVRSSK 679

Query: 122 EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIR 179
           +E ++ ++    L LM G     + V I         AT R   +   L+   RF     
Sbjct: 680 QEQIHASIVSTLLALMDGMDGRGQVVVI--------GATNRPDSVDPALRRPGRFDREFY 731

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
            +   IE  + I+    K     + +    E+A  ++G     G  LR +   A + 
Sbjct: 732 FSLPNIEARRAILDIHTKEWDPPLPNNIKDELADMTKG---YGGADLRALCTEAAIN 785


>gi|221060450|ref|XP_002260870.1| ATPase [Plasmodium knowlesi strain H]
 gi|193810944|emb|CAQ42842.1| ATPase, putative [Plasmodium knowlesi strain H]
          Length = 1133

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 72/192 (37%), Gaps = 15/192 (7%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLT 101
           K   ++   +L  GPPG  KT  A+ +A E+ +NF S  GP I           +  +  
Sbjct: 739 KYNIQSPKGILLYGPPGCSKTLFAKAIASEINMNFISVKGPEIFSKYVGESEKTIRNIFK 798

Query: 102 NLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA 159
              + +  V+F DEI  +++          ++F  + ++ +  +      N     ++AA
Sbjct: 799 KARENNPCVIFFDEIDSIAVNRN-----LNQNFVTNRVLCQLLNEIDGIYNRVDVIILAA 853

Query: 160 TTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRG 217
           T R  L+   L    RF   I +     +   +I+++  K   +        E    S  
Sbjct: 854 TNRPDLIDPALLRPGRFDRIIYVPLPNYKSRLSILRKTLKFYKINNMINGRGENDPPSNS 913

Query: 218 TPRIAGRLLRRV 229
             R+      R 
Sbjct: 914 CVRVINEETSRC 925


>gi|157109980|ref|XP_001650903.1| aaa atpase [Aedes aegypti]
 gi|108878840|gb|EAT43065.1| aaa atpase [Aedes aegypti]
          Length = 399

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 48/214 (22%), Positives = 82/214 (38%), Gaps = 21/214 (9%)

Query: 46  AAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI-----AKAGDLAALL 100
           +A +  +A   VL  GPPG GKT +A+  A+E G+ F +    ++      ++  LA+ +
Sbjct: 118 SASSLYQAPKGVLLYGPPGCGKTLIAKATAKEAGMRFINLDVAMLTDKWYGESQKLASAV 177

Query: 101 TNLEDR---DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV---GEGPSARSVKINLSRF 154
            +L  +    ++FIDEI           + A    +   M+   G    + S  I     
Sbjct: 178 FSLAVKIQPCIIFIDEIDSFLRARNSSDHEATAMMKTQFMMLWDGLNTESDSTVI----- 232

Query: 155 TLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMR 214
            ++ AT R   L   +  R      +     +    I+Q   +   LA       E    
Sbjct: 233 -VMGATNRPQDLDKAILRRMPAQFHIGLPSEDQRLKILQLILRQEKLAKD----VEFGQL 287

Query: 215 SRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           +R T   +G  LR +   A V   + + RE    
Sbjct: 288 ARMTNGYSGSDLREMCRNASVYRIRKVMREKNKE 321


>gi|58266940|ref|XP_570626.1| hypothetical protein [Cryptococcus neoformans var. neoformans JEC21]
 gi|57226859|gb|AAW43319.1| conserved hypothetical protein [Cryptococcus neoformans var.
            neoformans JEC21]
          Length = 1309

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 49/254 (19%), Positives = 87/254 (34%), Gaps = 37/254 (14%)

Query: 28   EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
            E+  G  +    +  F+   K R      +L  VGPPG+GKT++ + +A+ LG  F   S
Sbjct: 768  EDHYGLKDVKDRILEFMAIGKLRGSVEGKILCLVGPPGVGKTSIGKSIAKALGRQFFRFS 827

Query: 87   GPVIAKAGDLAALLTN----------------LEDRDVLFIDEIHRLSIIVE-------- 122
               +    ++                        +  ++ IDE+ ++S            
Sbjct: 828  VGGLTDVAEIKGHRRTYIGAMPGKPIQALKKVATENPLILIDEVDKISKAYNGDPASALL 887

Query: 123  EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
            E+L P      LD  +        V I+LS+   +     +  +  PL DR  +     +
Sbjct: 888  EMLDPEQNKSFLDHYL-------DVPIDLSKVLFVCTANVLETIPGPLLDRMEVLEVSGY 940

Query: 183  YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
               E +  I +R            AA    +     P     L+R     + V + K   
Sbjct: 941  VSAEKM-NIAER----YLSPQAKVAAGLEDVNIELEPGAIEALIRYYCRESGVRNLKKHI 995

Query: 243  REIADAALLRLAID 256
             +I   A  ++  D
Sbjct: 996  DKIYRKAAFKIVTD 1009


>gi|89100506|ref|ZP_01173367.1| Cell division protein ftsH [Bacillus sp. NRRL B-14911]
 gi|89084772|gb|EAR63912.1| Cell division protein ftsH [Bacillus sp. NRRL B-14911]
          Length = 662

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 61/248 (24%), Positives = 91/248 (36%), Gaps = 27/248 (10%)

Query: 26  TLEEFTG-----QV--EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
             ++  G     Q   E    LK   + A   A     VL VGPPG GKT LA+ VA E 
Sbjct: 160 RFKDVAGADEEKQELVEVVEFLKDPRKFADLGARIPKGVLLVGPPGTGKTLLARAVAGEA 219

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG       V   A  +  L  N +     ++FIDEI  +       L    +
Sbjct: 220 GVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCIIFIDEIDAVGRQRGAGLGGGHD 279

Query: 131 DFQLD----LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
           + +      L+  +G  A    I      ++AAT R  +L   L    RF   I ++  +
Sbjct: 280 EREQTLNQLLVEMDGFGANEGII------IVAATNRPDILDPALLRPGRFDRQITVDRPD 333

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +   + +++  A+   L  +       A     +      LL      A   + K +   
Sbjct: 334 VNGREAVLKVHARNKPLDESVNLKAIAARTPGFSGADLENLLNEAALVAARQNKKKVDMT 393

Query: 245 IADAALLR 252
             D A  R
Sbjct: 394 DIDEATDR 401


>gi|172056096|ref|YP_001812556.1| ATP-dependent metalloprotease FtsH [Exiguobacterium sibiricum
           255-15]
 gi|171988617|gb|ACB59539.1| ATP-dependent metalloprotease FtsH [Exiguobacterium sibiricum
           255-15]
          Length = 668

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 62/246 (25%), Positives = 99/246 (40%), Gaps = 27/246 (10%)

Query: 26  TLEEFTG-----QV--EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G     Q   E    LK   + A+  A     VL VGPPG GKT LA+  A E 
Sbjct: 162 TFDDVAGADEEKQELVEVVEFLKDPRKFARLGARIPKGVLLVGPPGTGKTLLARAAAGEA 221

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG       V   A  +  L  N +     ++FIDEI  +       L    +
Sbjct: 222 GVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCIIFIDEIDAVGRQRGAGLGGGHD 281

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E       +       +IAAT R  +L   L    RF   I +   ++ 
Sbjct: 282 EREQTLNQLLVEMDGFSENEG----IIMIAATNRADILDPALLRPGRFDRQITVERPDVV 337

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + +++  A+   L  T     ++   ++ TP  +G  L  + + A +  A+T   +I+
Sbjct: 338 GREAVLKVHARNKPLDTT----VDLKAIAQRTPGFSGADLENLLNEAALIAARTDRDKIS 393

Query: 247 DAALLR 252
              L  
Sbjct: 394 IVDLEE 399


>gi|320353056|ref|YP_004194395.1| membrane protease FtsH catalytic subunit [Desulfobulbus propionicus
           DSM 2032]
 gi|320121558|gb|ADW17104.1| membrane protease FtsH catalytic subunit [Desulfobulbus propionicus
           DSM 2032]
          Length = 611

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 63/252 (25%), Positives = 102/252 (40%), Gaps = 27/252 (10%)

Query: 26  TLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  EA + L+  I       +  K        VL  G PG GKT LA+ +A E 
Sbjct: 152 TFKDVAGIDEAKAELEEIIDFLRDPQKFTKLGGRIPKGVLLAGSPGTGKTLLARAIAGEA 211

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F + SG       V   A  +  L +  +     ++FIDEI  +       L    +
Sbjct: 212 GVPFFTISGSDFVEMFVGVGASRVRDLFSQGKKNAPCIIFIDEIDAVGRHRGAGLGGGHD 271

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E               +IAAT R  +L   L    RF   + +   +++
Sbjct: 272 EREQTLNQLLVEMDGFEGNDG----VIIIAATNRPDVLDPALLRPGRFDRQVVVPVPDVK 327

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++   K T LA       ++A+ +RGTP  +G  L  + + A +  A+    E+ 
Sbjct: 328 GREKILEIYGKKTKLAAD----VDMAVIARGTPGFSGADLENLINEAALMAAREGKEEVD 383

Query: 247 DAALLRLAIDKM 258
            A L R     M
Sbjct: 384 AAQLERAKDKVM 395


>gi|218289170|ref|ZP_03493406.1| Microtubule-severing ATPase [Alicyclobacillus acidocaldarius LAA1]
 gi|218240753|gb|EED07932.1| Microtubule-severing ATPase [Alicyclobacillus acidocaldarius LAA1]
          Length = 503

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 60/279 (21%), Positives = 96/279 (34%), Gaps = 35/279 (12%)

Query: 7   LLSRNVSQEDADISLLRPR-TLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVL 58
           L  RN           RP  + +E  GQ  A   L   +         A+     +  +L
Sbjct: 43  LDRRNAQSPAGRDVSARPNVSFDEIGGQESAKRELMEALDFLRYRDRIAQLGIRPIKGIL 102

Query: 59  FVGPPGLGKTTLAQVVARELGVNFRSTSGPVI---------AKAGDLAALLTNLEDRD-- 107
             GPPG GKT +A+  A      F S SG            ++  DL      L  R+  
Sbjct: 103 LTGPPGTGKTLMAKAAATYTDSVFLSASGSEFVEMYVGVGASRVRDLFRRARALAKRENK 162

Query: 108 ---VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164
              ++F+DEI  +     +  +   +     L+        S         ++AAT R  
Sbjct: 163 DSAIIFLDEIDVVGGRRGQHSHQEYDQTLNQLLTEMDGMNTSQH---PFVLVMAATNRPD 219

Query: 165 LLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
           +L   L    RF   IR++  + E    I+ R          D     IA   R T   +
Sbjct: 220 MLDPALLRPGRFDRQIRVDLPDKEGRLHIL-RIQTKNKPLAPDVDLEHIA---RETFGFS 275

Query: 223 GRLLRRVRDFAEV----AHAKTITREIADAALLRLAIDK 257
           G  L  V + A +         I +E+   A+ ++ + +
Sbjct: 276 GAQLEAVVNEAAIMALRKGESMIRQEMFRDAVDKVLMGE 314


>gi|168003463|ref|XP_001754432.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694534|gb|EDQ80882.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 220

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/218 (21%), Positives = 78/218 (35%), Gaps = 23/218 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA---RELG 79
           RP+   E  GQ     +L   +    A+ +A    +F+GP G GKT+ A+V A     L 
Sbjct: 12  RPKNFNEIVGQNVVVKSLSTAV----AKRKAAPVYMFMGPRGTGKTSAARVFAAGLNCLS 67

Query: 80  VNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL---YPAMEDFQLDL 136
            ++      +  + G +A   +     DV  ID    + +     L   +     +++ +
Sbjct: 68  PDYARRPCGICRECGTIALNRSA----DVRQIDAASNMDMASMRALMGSFTPHAQYKIFI 123

Query: 137 MVG--------EGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
           + G             + ++        I  TT    +      R          E + +
Sbjct: 124 VEGCDLLSSDIWNAFLKLLEEPPRNVVFILITTHAERIPPTAISRCQKFQFFKLKEPDIV 183

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
           K  +Q  A    L V  +A   IA RS G+ R A   L
Sbjct: 184 KR-LQFLAAKEDLRVEADALALIATRSDGSLRDAEIFL 220


>gi|126132366|ref|XP_001382708.1| Cell division control protein 48 [Scheffersomyces stipitis CBS
           6054]
 gi|126094533|gb|ABN64679.1| Cell division control protein 48 [Scheffersomyces stipitis CBS
           6054]
          Length = 829

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 71/195 (36%), Gaps = 23/195 (11%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHV--------LFVGPPGLGKTTLAQVVARELG 79
           ++  G  +  + ++  +E      +    +        L  GPPG GKT +A+ VA E G
Sbjct: 215 DDIGGCKKQMAQIRELVELPLRHPQLFKSIGIKPPKGILMYGPPGTGKTIMARAVANETG 274

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAMED 131
             F   +GP I          +L       E     ++FIDEI  ++   ++        
Sbjct: 275 AFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPSIIFIDEIDSIAPKRDK-----TNG 329

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
                +V +  +        S   +IAAT R   +   L+   RF   + +   + E   
Sbjct: 330 EVERRVVSQLLTLMDGMKARSNVVVIAATNRPNSIDPALRRFGRFDREVDIGVPDAEGRL 389

Query: 190 TIVQRGAKLTGLAVT 204
            I++   K   LA  
Sbjct: 390 EILRIHTKNMKLADD 404



 Score = 48.5 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 80/226 (35%), Gaps = 20/226 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
           T ++  G     + LK  +E      +            VLF GPPG GKT LA+ VA E
Sbjct: 486 TWDDIGGLDAIKNELKETVEYPVLHPDQYQKFGLAPTKGVLFFGPPGTGKTLLAKAVATE 545

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAM 129
           +  NF S  GP +          ++  +          V+F+DE+  ++         A 
Sbjct: 546 VSANFISVKGPELLSMWYGESESNIRDIFDKARAAAPTVVFLDELDSIAKARGASQGDA- 604

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                D +V +  +            +I AT R   +   L    R    I +   +   
Sbjct: 605 -GGASDRVVNQLLTEMDGMNAKKNVFVIGATNRPDQIDPALLRPGRLDQLIYVPLPDEPA 663

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
             +I+Q   + T L    + A    + +  +      +++R   FA
Sbjct: 664 RLSILQAQLRNTPLEPNLDLAEIAKITNGFSGADLSYIVQRSAKFA 709


>gi|73971222|ref|XP_866137.1| PREDICTED: similar to Transitional endoplasmic reticulum ATPase
           (TER ATPase) (15S Mg(2+)-ATPase p97 subunit)
           (Valosin-containing protein) (VCP) isoform 9 [Canis
           familiaris]
          Length = 787

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/235 (19%), Positives = 84/235 (35%), Gaps = 34/235 (14%)

Query: 2   MDREGLLSRNVSQED-------ADISLLR------PR-TLEEFTGQVEACSNLKVFIEAA 47
           +D E + S  V+ +D       ++ S LR      P+ T E+  G  +    L+  ++  
Sbjct: 418 IDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYP 477

Query: 48  KARAEAL--------DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKA 93
               +            VLF GPPG GKT LA+ +A E   NF S  GP +         
Sbjct: 478 VEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESE 537

Query: 94  GDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINL 151
            ++  +          VLF DE+  ++                D ++ +  +        
Sbjct: 538 ANVREIFDKARQAAPCVLFFDELDSIAKARGGN--IGDGGGAADRVINQILTEMDGMSTK 595

Query: 152 SRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVT 204
               +I AT R  ++   +    R    I +   + +    I++   + + +A  
Sbjct: 596 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKD 650



 Score = 43.5 bits (101), Expect = 0.050,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 49/149 (32%), Gaps = 24/149 (16%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------------VLFVGPPGLGKTTLA 71
           +L E  G  +     K   +  +     L H              +L  GPPG GKT +A
Sbjct: 197 SLNE-VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255

Query: 72  QVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125
           + VA E G  F   +GP I          +L       E        E+ R  +     L
Sbjct: 256 RAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNT---HGEVERRIVSQLLTL 312

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRF 154
              ++     +++       S+   L RF
Sbjct: 313 MDGLKQRAHVIVMAATNRPNSIDPALRRF 341


>gi|29654649|ref|NP_820341.1| ATP-dependent metallopeptidase HflB [Coxiella burnetii RSA 493]
 gi|161831494|ref|YP_001597194.1| ATP-dependent metallopeptidase HflB [Coxiella burnetii RSA 331]
 gi|29541917|gb|AAO90855.1| cell division protein [Coxiella burnetii RSA 493]
 gi|161763361|gb|ABX79003.1| ATP-dependent metallopeptidase HflB [Coxiella burnetii RSA 331]
          Length = 647

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 51/247 (20%), Positives = 92/247 (37%), Gaps = 19/247 (7%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAK-------ARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  EA   +K  +E  +          +    VL VGPPG GKT LA+ VA E 
Sbjct: 154 TFDDVAGVDEAKEEVKELVEFLRDPGKFQRLGGKMPCGVLLVGPPGTGKTLLAKAVAGEA 213

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F + SG       V   A  +  +    + +   ++FIDEI  +       L    +
Sbjct: 214 KVPFFTISGSDFVEMFVGVGASRVRDMFDQAKKQAPCIIFIDEIDAVGRHRGAGLGGGHD 273

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
           + +  L   +               ++AAT R  +L   L    RF   + +   +I+  
Sbjct: 274 EREQTL--NQLLVEMDGFEGKEGIIVMAATNRPDVLDPALLRPGRFDRQVVVPLPDIKGR 331

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           + I++       LA   +A+         +      ++     FA   + K ++    + 
Sbjct: 332 EYILKVHMNKLPLAKDVKASVIARGTPGFSGADLANIVNEAALFAARENKKDVSMSEFER 391

Query: 249 ALLRLAI 255
           A  ++ +
Sbjct: 392 AKDKIMM 398


>gi|325117386|emb|CBZ52938.1| putative cell division protein [Neospora caninum Liverpool]
          Length = 959

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 79/196 (40%), Gaps = 17/196 (8%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAAKARAE-------ALDHVLFVGPPGLGKTTLAQVVAR 76
           P T  +  G  EA + L+  ++  +  ++           VL VGPPG GKT LA+ VA 
Sbjct: 75  PLTFNDLAGLTEAKTELQEVVQFLRDPSKFERLGARLPKGVLLVGPPGTGKTALARAVAT 134

Query: 77  ELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPA 128
           E GV +   SG           A  +  L +   +    ++F+DE+  +    +    P 
Sbjct: 135 EAGVPYFYASGSEFVEIYVGQGARRVRGLFSYARNHSPCIIFLDELDAVGGRRQAAGGPG 194

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
             + + D  + +            R  ++AAT RV  L   L    RF   + ++  ++ 
Sbjct: 195 AGNREHDQTLNQLLVEMDGFNQAHRIVVLAATNRVDTLDPALLRPGRFDRIVHVSLPDVA 254

Query: 187 DLKTIVQRGAKLTGLA 202
             + I+Q+  +   + 
Sbjct: 255 ARELILQKYLQRVPVE 270


>gi|322710616|gb|EFZ02190.1| intermembrane space AAA protease IAP-1 [Metarhizium anisopliae
           ARSEF 23]
          Length = 688

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 57/252 (22%), Positives = 91/252 (36%), Gaps = 30/252 (11%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVARE 77
               +  G  EA   L+  +E  K         A+    VL VGPPG GKT LA+ VA E
Sbjct: 202 TRFSDVHGCDEAKEELQEVVEFLKNPENFSDLGAKLPKGVLLVGPPGTGKTLLARAVAGE 261

Query: 78  LGVNFRSTSGPVIA------KAGDLAALLTNLEDRD--VLFIDEIHRL----SIIVEEIL 125
            GV F   SG           A  +  L    + +   ++FIDE+  +    +   +   
Sbjct: 262 AGVPFFYMSGSEFDEIFVGVGAKRVRELFAAAKAKSPAIIFIDELDAIGGKRNPRDQ--- 318

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183
             A     L+ ++ E            +  ++ AT    LL   L    RF   I ++  
Sbjct: 319 --AHAKQTLNQLLTELDGFDQDT----KIIIMGATNLPNLLDKALTRPGRFDRHINVDLP 372

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           ++     I++  AK    A   +     A     +      +L      A  A A  +++
Sbjct: 373 DVRGRLAILKHHAKKIKAAPDVDLDAIAARSPGRSGAELENMLNLAALRASRARATVVSK 432

Query: 244 EIADAALLRLAI 255
           E  D A  R+ +
Sbjct: 433 EDLDWAFDRVTM 444


>gi|225452799|ref|XP_002283393.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 676

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 61/274 (22%), Positives = 98/274 (35%), Gaps = 23/274 (8%)

Query: 26  TLEEFTG-----Q--VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G     Q   E    LK   + A   A     VL VGPPG GKT LA+ +A E 
Sbjct: 212 TFNDVAGVDEAKQDFQEIVEFLKTPEKFAAVGARIPKGVLLVGPPGTGKTLLAKAIAGEA 271

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG           A  +  L    ++    ++FIDEI  +       +    +
Sbjct: 272 GVPFFSLSGSEFIEMFVGIGASRVRDLFNKAKENSPCLVFIDEIDAVGRQRGTGIGGGND 331

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E           S   +IAAT R  +L + L    RF   + +   +I 
Sbjct: 332 EREQTLNQLLTEMDGFSGN----SGVIVIAATNRPEILDSALLRPGRFDRQVTVGLPDIR 387

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++  +    L      +         +      L+      A       IT +  
Sbjct: 388 GREEILKVHSNNKKLDKDVSLSIIAMRTPGFSGADLANLMNEAAILAGRRGKDKITLKEI 447

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV 280
           D ++ R+     G    D +   ++A +  G  V
Sbjct: 448 DDSIDRIVAGMEGTKMTDGKSKILVAYHEIGHAV 481


>gi|121715706|ref|XP_001275462.1| LON domain serine protease, putative [Aspergillus clavatus NRRL 1]
 gi|119403619|gb|EAW14036.1| LON domain serine protease, putative [Aspergillus clavatus NRRL 1]
          Length = 1114

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 67/192 (34%), Gaps = 33/192 (17%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI   K R      +L  VGPPG+GKT++ + +AR L   +   S
Sbjct: 577 EDHYGLKDVKDRILEFIAVGKLRGTVEGKILCLVGPPGVGKTSIGKSIARALNRQYYRFS 636

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ ++    +        
Sbjct: 637 VGGLTDVAEIKGHRRTYVGALPGRIIQALKKCQTENPLILIDEVDKIGRGHQGDPSSALL 696

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           V ++LS+   +        +  PL DR  I     +
Sbjct: 697 ELLDPEQNSSFLD-------HYMDVPVDLSKVLFVCTANVTDTIPRPLLDRMEIIELSGY 749

Query: 183 YEIEDLKTIVQR 194
              E +  I +R
Sbjct: 750 VSDEKMA-IAER 760


>gi|147920787|ref|YP_685407.1| cell division cycle protein 48 [uncultured methanogenic archaeon
           RC-I]
 gi|110620803|emb|CAJ36081.1| cell division cycle protein 48 [uncultured methanogenic archaeon
           RC-I]
          Length = 743

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 49/198 (24%), Positives = 71/198 (35%), Gaps = 23/198 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
           T E+  G  E    ++  IE      E            VL  GPPG GKT LA+ VA E
Sbjct: 190 TYEDIGGLREEVQRVREMIELPMKHPELFQRLGIDPPKGVLLHGPPGTGKTLLAKAVANE 249

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAM 129
            G  F S +GP I           L  +     D    ++FIDE+  ++   EE+     
Sbjct: 250 CGAEFYSIAGPEIMSKYYGESEQRLREIFEQARDSAPSIIFIDELDSIAPKREEVTGEVE 309

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                 L+          +       +I AT R+  +   L+   RF   I +   +  D
Sbjct: 310 RRVVAQLLTMMDGLEERGQ-----VVVIGATNRLDAIDPALRRAGRFDREIEIGVPDASD 364

Query: 188 LKTIVQRGAKLTGLAVTD 205
              I+Q   +   L   D
Sbjct: 365 RLEILQIHTRGMPLEGVD 382



 Score = 45.5 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 84/240 (35%), Gaps = 21/240 (8%)

Query: 53  ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGDLAALLTNLEDR---- 106
               ++  GPPG GKT LA+ VA E   NF +  GP +     G+    +     +    
Sbjct: 496 PPKGIVLYGPPGTGKTLLARAVAGESEANFINIRGPELLSKWVGESEKAVRETFRKARQV 555

Query: 107 --DVLFIDEIHRLSIIVEEILYPAMEDFQL--DLMVGEGPSARSVKINLSRFTLIAATTR 162
              ++F DE+  L+           ED     + +V +  +     + L    +I A+ R
Sbjct: 556 SPSIIFFDELDALAPAR----GGGGEDGSRVSERVVNQILTELDGLVELEGVVVIGASNR 611

Query: 163 VGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPR 220
             ++   L    RF   + +     E    I++   +   LA   +      +       
Sbjct: 612 PDIIDPALLRPGRFDRLVYVGAPSKEGRIGILKIHTRNMPLAADVDLGQIADLTENYVGS 671

Query: 221 IAGRLLRRVRDFA--EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
               + R     A  E   AK ++      A+ ++   K   + +   Y   I  +F GG
Sbjct: 672 DLEAICREAAMLALRESFEAKEVSFRHFQEAVKKV---KPTMNDMISSYYKSIRDHFKGG 728


>gi|28188571|gb|AAN46211.1| unknown protein [Arabidopsis thaliana]
          Length = 316

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 49/279 (17%), Positives = 93/279 (33%), Gaps = 42/279 (15%)

Query: 9   SRNVSQEDADISLLRPR---------TLEEFTGQVEACSNLKVFIEAAKARAEALDH--- 56
           S+ V+ ++     +RP          T  +     E   +L+  +     R +       
Sbjct: 1   SKEVAPDNEFEKRIRPEVIPANEIGVTFADIGSLDETKESLQELVMLPLRRPDLFKGGLL 60

Query: 57  -----VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLED 105
                +L  GPPG GKT +A+ +A E G +F + S   I          ++ AL T    
Sbjct: 61  KPCRGILLFGPPGTGKTMMAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAK 120

Query: 106 --RDVLFIDEIH-----RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIA 158
               ++F+DE+      R  +   E +     +F              +     R  ++A
Sbjct: 121 VSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFM-------THWDGLMSNAGDRILVLA 173

Query: 159 ATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGT 218
           AT R   L   +  RF   I +    +E  + I++           D         ++ T
Sbjct: 174 ATNRPFDLDEAIIRRFERRIMVGLPSVESREKILRTLLSKEKTENLD-----FQELAQMT 228

Query: 219 PRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257
              +G  L+     A     + + ++       R   ++
Sbjct: 229 DGYSGSDLKNFCTTAAYRPVRELIKQECLKDQERRKREE 267


>gi|74201504|dbj|BAE26178.1| unnamed protein product [Mus musculus]
          Length = 893

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 84/243 (34%), Gaps = 34/243 (13%)

Query: 29  EFTGQVEACSNLKVFIEAAK---ARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
           +  G     S LK   E  +    + E            +L  GPPG GKT +A+ VA E
Sbjct: 353 DMIG--GLNSQLKAIREIIELPLKQPELFKSYGIPAPRGLLLYGPPGTGKTMIARAVANE 410

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIV---EEILY 126
           +G      +GP I           L  +      R   ++FIDE+  L       +  + 
Sbjct: 411 VGAYVSVINGPEIISKFYGETEARLRQIFAEATLRHPSIIFIDELDALCPKREGAQSEVE 470

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
             +    L LM G G           R  ++ AT R   L   L+   RF   I +    
Sbjct: 471 KRVVASLLTLMDGIGSEGSEG-----RVLVLGATNRPQALDAALRRPGRFDKEIEIGIPN 525

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            +D   I+Q   KL           E+   +       G  L+ + + A +   + + R+
Sbjct: 526 AQDRLDILQ---KLLRRVPHLLTKAELLRLANNAHGYVGADLKALCNEAGLHALRRVLRK 582

Query: 245 IAD 247
             +
Sbjct: 583 QPN 585



 Score = 52.0 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 66/186 (35%), Gaps = 21/186 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
           +  +  G       LK  +E      +            VL  GPPG  KT +A+ +A E
Sbjct: 625 SWSDIGGLENIKLKLKQAVEWPLKHPKSFNRMGIQPPKGVLLYGPPGCSKTMIAKALANE 684

Query: 78  LGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAM 129
            G+NF +  GP +     G+    +  +  +       ++F DE+  L++          
Sbjct: 685 SGLNFLAIKGPELMNKYVGESERAVREIFRKARAVAPSIIFFDELDALAVERGSSSGAGN 744

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                D ++ +  +       L   T++AAT R   +   L    R    I +   +   
Sbjct: 745 ---VADRVLAQLLTEMDGIEQLKNVTVLAATNRPDRIDKALMRPGRIDRIIYVPLPDAAT 801

Query: 188 LKTIVQ 193
            + I+ 
Sbjct: 802 RREILN 807


>gi|319793176|ref|YP_004154816.1| DNA polymerase iii, subunits gamma and tau [Variovorax paradoxus
           EPS]
 gi|315595639|gb|ADU36705.1| DNA polymerase III, subunits gamma and tau [Variovorax paradoxus
           EPS]
          Length = 625

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 59/195 (30%), Gaps = 46/195 (23%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP+T  E  GQ          +E A          LF G  G+GKTT+++++A+ L
Sbjct: 7   ARKFRPKTFGEMVGQGHVV----QALENALTTQRLHHAYLFTGTRGVGKTTVSRILAKSL 62

Query: 79  GVN-----------------------------FRSTSGPVIAKAGDLAALLTNL------ 103
                                           +            ++ +LL         
Sbjct: 63  NCQGPDGQGGITATPCGVCQACRDIDSGRFVDYTELDAASNRGVDEVQSLLEQAVYKPVQ 122

Query: 104 EDRDVLFIDEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAAT- 160
               V  IDE+H L+      +   +E+    L  ++      +     LSR        
Sbjct: 123 GRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNLRP 182

Query: 161 ----TRVGLLTNPLQ 171
               T +  LT+ LQ
Sbjct: 183 MAPETILEHLTSVLQ 197


>gi|260431104|ref|ZP_05785075.1| cell division protease FtsH [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260414932|gb|EEX08191.1| cell division protease FtsH [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 638

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 54/251 (21%), Positives = 92/251 (36%), Gaps = 27/251 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  EA   L+  +E        ++   +     L VGPPG GKT LA+ +A E 
Sbjct: 152 TFDDVAGIDEAKEELEEIVEFLRNPQKFSRLGGKIPKGALLVGPPGTGKTLLARAIAGEA 211

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F + SG       V   A  +  +    +     ++FIDEI  +            +
Sbjct: 212 GVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKNAPCIVFIDEIDAVGRHRGAGYGGGND 271

Query: 131 DFQLD----LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
           + +      L+  +G  A    I L      AAT R  +L   L    RF   + +   +
Sbjct: 272 EREQTLNQLLVEMDGFEANEGVIIL------AATNRKDVLDPALLRPGRFDRQVTVGNPD 325

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           I+  + I+   A+ T L    +           +      L+      A     + +T E
Sbjct: 326 IKGREKILGVHARKTPLGPDVDLRIIARGTPGFSGADLANLVNEAALMAARVGRRFVTME 385

Query: 245 IADAALLRLAI 255
             + A  ++ +
Sbjct: 386 DFENAKDKVMM 396


>gi|255710811|ref|XP_002551689.1| KLTH0A05324p [Lachancea thermotolerans]
 gi|238933066|emb|CAR21247.1| KLTH0A05324p [Lachancea thermotolerans]
          Length = 832

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 85/245 (34%), Gaps = 21/245 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
           T ++  G  E    LK  +E      +            VLF GPPG GKT LA+ VA E
Sbjct: 485 TWDDIGGLDEIKEELKETVEYPVLHPDQYTKFGLSPSKGVLFYGPPGTGKTLLAKAVATE 544

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAM 129
           +  NF S  GP +          ++  +          V+F+DE+  ++      +  A 
Sbjct: 545 VSANFISVKGPELLSMWYGESESNIRDIFDKARAAAPTVVFLDELDSIAKARGGSVGDA- 603

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLK 189
                D +V +  +            +I AT R   +   +     +   +     +++ 
Sbjct: 604 -GGASDRVVNQLLTEMDGMNAKKNVFVIGATNRPDQIDPAILRPGRLDQLIYVPLPDEMA 662

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            +    A+L    +      E++  ++ T   +G  L  +   A    A   + E    A
Sbjct: 663 RLSILNAQLRNTPLEP--GLELSTIAKATQGFSGADLSYIVQRAA-KFAIKDSIEAQRRA 719

Query: 250 LLRLA 254
           L    
Sbjct: 720 LAEQQ 724



 Score = 50.5 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 34/132 (25%), Positives = 53/132 (40%), Gaps = 14/132 (10%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLED 105
           +    +L  GPPG GKT +A+ VA E G  F   +GP +          +L       E 
Sbjct: 246 KPPRGILMYGPPGTGKTLMARAVANETGAFFFLINGPEVMSKMAGESESNLRKAFEEAEK 305

Query: 106 R--DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
               ++FIDEI  ++   ++             +V +  +        S   +IAAT R 
Sbjct: 306 NAPAIIFIDEIDSIAPKRDK-----TNGEVERRVVSQLLTLMDGMKARSNVVVIAATNRP 360

Query: 164 GLLTNPLQDRFG 175
             +   L+ RFG
Sbjct: 361 NSIDPALR-RFG 371


>gi|154147958|ref|YP_001406806.1| DNA polymerase III subunit gamma/tau [Campylobacter hominis ATCC
           BAA-381]
 gi|153803967|gb|ABS50974.1| DNA polymerase III subunit gamma/tau [Campylobacter hominis ATCC
           BAA-381]
          Length = 526

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 65/212 (30%), Gaps = 40/212 (18%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVA 75
           A     RP+  +E  GQ     +L   +++ +     L H  LF G  G GKT+ A++ A
Sbjct: 3   ALALKYRPKNFDELIGQDTIAKSLSHALDSKR-----LSHAYLFSGLRGSGKTSSARIFA 57

Query: 76  RE------------------------LGVNFRSTSGPVIAKAGDLAALLTNLE------D 105
           ++                          ++          K  D+  L+   +       
Sbjct: 58  KDLICEKGPTSHACEECDNCIMANEGRHIDIIEMDAASHRKIDDIRELIEQTKYAPSVAR 117

Query: 106 RDVLFIDEIHRLSIIVEEILYPAMEDF--QLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
             +  IDE+H L+      L   +E+    +  ++      +     LSR          
Sbjct: 118 YKIFIIDEVHMLTTEASNALLKTLEEPPEYVKFILATTNPLKLPVTVLSRTQHFRFKPIA 177

Query: 164 GLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG 195
             L     +       + +   +    I+ R 
Sbjct: 178 TNLIMAHLEYILQNENIAY--EQSAIEILARS 207


>gi|149925458|ref|ZP_01913722.1| AAA ATPase, central region [Limnobacter sp. MED105]
 gi|149825575|gb|EDM84783.1| AAA ATPase, central region [Limnobacter sp. MED105]
          Length = 483

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 47/277 (16%), Positives = 92/277 (33%), Gaps = 46/277 (16%)

Query: 26  TLEEFTGQVEACSNLKVF-IEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRS 84
                         ++++ ++++  R   L  +L  GP G GK+  A+ +A  L   +  
Sbjct: 216 NFAHVV--DHVLRQMRIWSLKSSHER--RLKPILLDGPKGTGKSAFARELAEALNTRYAY 271

Query: 85  TSGPVIAKAGDLAALLTNLEDR----------------DVLFIDEIHRLSIIVEEI---- 124
            +    +  G L        +                  ++ +DEI ++S   +      
Sbjct: 272 INISATSMGGVLTGTSNKWGNGQTGLIFSELARSETASPLILLDEIDKMSSFQQHPVEGP 331

Query: 125 LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
           L  A+E      +  E     S++ + SR   +A +  +  ++ PL+ RF +      Y 
Sbjct: 332 LLAALEPQTARELRDEYG---SIEFDASRVIYVATSNNLSSVSAPLRSRFDV--FDISYP 386

Query: 185 IEDLKTIVQRG--AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDF---------- 232
               + I+ R   AK          A     R  G  R+   +L RV             
Sbjct: 387 DRSQRLIIIRSMLAKAYRNVDFAPQALNFLARQEGDLRLLQSILDRVVACHVDLTLAQMG 446

Query: 233 ----AEVAHAKTITREIADAALLRLAIDKMGFDQLDL 265
               A +   + I       AL ++      FD +++
Sbjct: 447 LGRGATLRGKQLIQELTVRIALEQMGAKVRFFDHIEV 483


>gi|146161282|ref|XP_977097.2| ATPase, AAA family protein [Tetrahymena thermophila]
 gi|146146796|gb|EAR86317.2| ATPase, AAA family protein [Tetrahymena thermophila SB210]
          Length = 440

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 55/260 (21%), Positives = 103/260 (39%), Gaps = 21/260 (8%)

Query: 28  EEFTGQVEACSNLK-------VFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-G 79
           ++  G V+A  +LK        F E  K   +    +L  GPPG GKT LA+  A E  G
Sbjct: 140 DDIAGLVKAKESLKEAVILPIRFPEIFKGARKPWKGILLYGPPGTGKTYLAKACATETEG 199

Query: 80  VNFRSTSGPVIAK-AGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAMEDF 132
             F  +S  +++K  G+   L+ NL      +   ++FIDE+  L     +    A    
Sbjct: 200 TFFSVSSADLVSKYVGESEKLIKNLFALAREKKPSIIFIDEVDSLCGNRSDGENDASRRV 259

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIV 192
           + + +V         +  L    ++ AT     L   ++ RF   I +   +    K ++
Sbjct: 260 KTEFLVQMQGVGNDDQGVL----VLGATNLPWALDPAIRRRFEKRIYIPLPDQPARKFLL 315

Query: 193 QRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT--REIADAAL 250
           +   K T   + +E    ++  + G       +  R      V   +  T  +++     
Sbjct: 316 KHNLKNTPNTLKEEDFERLSQLTDGFSGADMSIFVRDAVLEPVRRLQIATKFKKLPGDKY 375

Query: 251 LRLAIDKMGFDQLDLRYLTM 270
           + +  +  G D ++L YL++
Sbjct: 376 MPVEDNASGPDIVNLNYLSL 395


>gi|254553470|ref|NP_001156983.1| spermatogenesis-associated protein 5 isoform 1 [Mus musculus]
 gi|187611511|sp|Q3UMC0|SPAT5_MOUSE RecName: Full=Spermatogenesis-associated protein 5; AltName:
           Full=Spermatogenesis-associated factor protein
 gi|12847023|dbj|BAB27406.1| unnamed protein product [Mus musculus]
 gi|123252473|emb|CAM25218.1| spermatogenesis associated 5 [Mus musculus]
 gi|123294949|emb|CAM21042.1| spermatogenesis associated 5 [Mus musculus]
          Length = 893

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 84/243 (34%), Gaps = 34/243 (13%)

Query: 29  EFTGQVEACSNLKVFIEAAK---ARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
           +  G     S LK   E  +    + E            +L  GPPG GKT +A+ VA E
Sbjct: 353 DMIG--GLNSQLKAIREIIELPLKQPELFKSYGIPAPRGLLLYGPPGTGKTMIARAVANE 410

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIV---EEILY 126
           +G      +GP I           L  +      R   ++FIDE+  L       +  + 
Sbjct: 411 VGAYVSVINGPEIISKFYGETEARLRQIFAEATLRHPSIIFIDELDALCPKREGAQSEVE 470

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
             +    L LM G G           R  ++ AT R   L   L+   RF   I +    
Sbjct: 471 KRVVASLLTLMDGIGSEGSEG-----RVLVLGATNRPQALDAALRRPGRFDKEIEIGIPN 525

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            +D   I+Q   KL           E+   +       G  L+ + + A +   + + R+
Sbjct: 526 AQDRLDILQ---KLLRRVPHLLTKAELLRLANNAHGYVGADLKALCNEAGLHALRRVLRK 582

Query: 245 IAD 247
             +
Sbjct: 583 QPN 585



 Score = 51.6 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 66/186 (35%), Gaps = 21/186 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
           +  +  G       LK  +E      +            VL  GPPG  KT +A+ +A E
Sbjct: 625 SWSDIGGLENIKLKLKQAVEWPLKHPKSFNRMGIQPPKGVLLYGPPGCSKTMIAKALANE 684

Query: 78  LGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAM 129
            G+NF +  GP +     G+    +  +  +       ++F DE+  L++          
Sbjct: 685 SGLNFLAIKGPELMNKYVGESERAVREIFRKARAVAPSIIFFDELDALAVERGSSSGAGN 744

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                D ++ +  +       L   T++AAT R   +   L    R    I +   +   
Sbjct: 745 ---VADRVLAQLLTEMDGIEQLKNVTVLAATNRPDRIDKALMRPGRIDRIIYVPLPDAAT 801

Query: 188 LKTIVQ 193
            + I+ 
Sbjct: 802 RREILN 807


>gi|325288402|ref|YP_004264583.1| membrane protease FtsH catalytic subunit [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324963803|gb|ADY54582.1| membrane protease FtsH catalytic subunit [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 645

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 59/246 (23%), Positives = 101/246 (41%), Gaps = 27/246 (10%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVARE 77
            T ++  G  E    L+  ++  K+        A+    VL  GPPG GKT LA+ V+ E
Sbjct: 153 TTFKDVAGADEVKEELEEIVDFLKSPRKFNEIGAKIPKGVLLFGPPGTGKTLLAKAVSGE 212

Query: 78  LGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
            GV F S SG       V   A  +  L    +     ++FIDEI  +       L    
Sbjct: 213 AGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKSAPCIVFIDEIDAVGRQRGAGLGGGH 272

Query: 130 EDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           ++ +  L  ++ E       +       ++AAT R  +L   L    RF   I ++  ++
Sbjct: 273 DEREQTLNQLLVEMDGFNGNEG----IIIVAATNRPDILDPALLRPGRFDRQIVVSVPDV 328

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           +  + I+   AK   LA       ++++ +R TP   G  L  + + A +  A+   + +
Sbjct: 329 KGREEILAVHAKGKPLAGD----VDLSVLARRTPGFTGADLANLFNEAALLTARRNEKAV 384

Query: 246 ADAALL 251
           +  AL 
Sbjct: 385 SMKALE 390


>gi|310828188|ref|YP_003960545.1| hypothetical protein ELI_2600 [Eubacterium limosum KIST612]
 gi|308739922|gb|ADO37582.1| hypothetical protein ELI_2600 [Eubacterium limosum KIST612]
          Length = 611

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 52/241 (21%), Positives = 83/241 (34%), Gaps = 20/241 (8%)

Query: 25  RTLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +T ++  GQ EA   L   +       + A   A      L VGPPG GKT LA+ VA E
Sbjct: 169 KTFKDVAGQDEAKEALTEIVDFLHNPKKYADIGANLPKGALLVGPPGTGKTLLARAVAGE 228

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
             V F S SG           A  +  L     D+   ++FIDEI  +    +   +   
Sbjct: 229 AKVPFFSISGSEFVEMFVGMGAAKVRDLFKQATDKAPCIVFIDEIDTIGKKRDSKGFTGN 288

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
           ++ +  L   +  S            ++AAT R   L   L    RF   I +   ++  
Sbjct: 289 DEREQTL--NQLLSEMDGFDGKKGVVILAATNRPETLDQALLRPGRFDRRIPVELPDLNG 346

Query: 188 LKTIVQ-RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
            + I++     +      D  A   A        +A  +             K    ++ 
Sbjct: 347 REAILKVHSQDVKMDGNIDYNAIARATAGASGADLANIINEAALRAVRCGRNKVKQNDLE 406

Query: 247 D 247
           +
Sbjct: 407 E 407


>gi|302849390|ref|XP_002956225.1| hypothetical protein VOLCADRAFT_83523 [Volvox carteri f.
           nagariensis]
 gi|300258528|gb|EFJ42764.1| hypothetical protein VOLCADRAFT_83523 [Volvox carteri f.
           nagariensis]
          Length = 640

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 56/252 (22%), Positives = 100/252 (39%), Gaps = 34/252 (13%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAK-------ARAEALDHVLFVGPPGLGKTTLAQVVARE 77
               +  G  EA   L+  +E  +          +    VL VGPPG GKT LA+ +A E
Sbjct: 180 TRFADVKGVDEAKHELEEIVEYLRDPHKFTNLGGKLPKGVLLVGPPGTGKTMLARAIAGE 239

Query: 78  LGVNFRSTSGPVIA------KAGDLAALLTNLEDRD--VLFIDEIHRL----SIIVEEIL 125
            GV F   SG           A  +  L T  +     ++FIDEI  +    +   ++ +
Sbjct: 240 AGVPFFYCSGSEFEEVFVGVGARRVRDLFTAAKKHAPCIIFIDEIDAIGGNRNPKDQQYM 299

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183
              +    ++L   +G  A    I      ++AAT    +L   L    RF   + +   
Sbjct: 300 RMTLNQLLVEL---DGFKATEGII------VVAATNFAEVLDKALVRPGRFDRHVVVPNP 350

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           ++E  K I++   +    +       ++++ +R TP  +G  L  + + A +  AKT  +
Sbjct: 351 DVEGRKQILETHMQKIPKSAD----LDLSVIARATPGFSGADLANLINVAALHAAKTGLK 406

Query: 244 EIADAALLRLAI 255
           E+   ++     
Sbjct: 407 EVGMRSMEYARD 418


>gi|219519355|gb|AAI45303.1| Spata5 protein [Mus musculus]
          Length = 893

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 84/243 (34%), Gaps = 34/243 (13%)

Query: 29  EFTGQVEACSNLKVFIEAAK---ARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
           +  G     S LK   E  +    + E            +L  GPPG GKT +A+ VA E
Sbjct: 353 DMIG--GLNSQLKAIREIIELPLKQPELFKSYGIPAPRGLLLYGPPGTGKTMIARAVANE 410

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIV---EEILY 126
           +G      +GP I           L  +      R   ++FIDE+  L       +  + 
Sbjct: 411 VGAYVSVINGPEIISKFYGETEARLRQIFAEATLRHPSIIFIDELDALCPKREGAQSEVE 470

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
             +    L LM G G           R  ++ AT R   L   L+   RF   I +    
Sbjct: 471 KRVVASLLTLMDGIGSEGSEG-----RVLVLGATNRPQALDAALRRPGRFDKEIEIGIPN 525

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            +D   I+Q   KL           E+   +       G  L+ + + A +   + + R+
Sbjct: 526 AQDRLDILQ---KLLRRVPHLLTKAELLRLANNAHGYVGADLKALCNEAGLHALRRVLRK 582

Query: 245 IAD 247
             +
Sbjct: 583 QPN 585



 Score = 51.6 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 66/186 (35%), Gaps = 21/186 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
           +  +  G       LK  +E      +            VL  GPPG  KT +A+ +A E
Sbjct: 625 SWSDIGGLENIKLKLKQAVEWPLKHPKSFNRMGIQPPKGVLLYGPPGCSKTMIAKALANE 684

Query: 78  LGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAM 129
            G+NF +  GP +     G+    +  +  +       ++F DE+  L++          
Sbjct: 685 SGLNFLAIKGPELMNKYVGESERAVREIFRKARAVAPSIIFFDELDALAVERGSSSGAGN 744

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                D ++ +  +       L   T++AAT R   +   L    R    I +   +   
Sbjct: 745 ---VADRVLAQLLTEMDGIEQLKNVTVLAATNRPDRIDKALMRPGRIDRIIYVPLPDAAT 801

Query: 188 LKTIVQ 193
            + I+ 
Sbjct: 802 RREILN 807


>gi|260802686|ref|XP_002596223.1| hypothetical protein BRAFLDRAFT_202938 [Branchiostoma floridae]
 gi|229281477|gb|EEN52235.1| hypothetical protein BRAFLDRAFT_202938 [Branchiostoma floridae]
          Length = 303

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 78/211 (36%), Gaps = 22/211 (10%)

Query: 33  QVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI-- 90
           Q  +       ++           VL  GPPG GKT +A+  A+E G  F +    V+  
Sbjct: 102 QKHSMFEGSQLLQ-------PPKGVLLYGPPGCGKTMIAKATAKEAGCRFINLQPSVLTD 154

Query: 91  ---AKAGDLAALLTNLEDR---DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSA 144
               ++  LA+ + +L  +    ++FIDEI       +   + A    + + M      A
Sbjct: 155 KWYGESQRLASAVFHLATKIQPAIIFIDEIDSFLRQRQSQDHEATAMMKAEFMSLWDGLA 214

Query: 145 RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVT 204
            + +    +  ++ AT R   +   +  R      +N    +  ++I++       ++  
Sbjct: 215 TNPR---CKVMVMGATNRPQDVDQAILRRMPSRFWINVPNEKQRESILKLILANEVVSED 271

Query: 205 DEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
                 +   +  T   +G  LR V   A V
Sbjct: 272 ----VNLRKIAEQTDACSGSDLREVCRNASV 298


>gi|119612439|gb|EAW92033.1| ATPase family, AAA domain containing 2, isoform CRA_a [Homo
           sapiens]
          Length = 939

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/186 (22%), Positives = 71/186 (38%), Gaps = 26/186 (13%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTS------GPVIAK-AGDLAALL 100
           K + +     LF GPPG GKT +A+ +A E     +  +         ++K  G+    L
Sbjct: 454 KFKIQPPRGCLFYGPPGTGKTLVARALANECSQGDKRVAFFMRKGADCLSKWVGESERQL 513

Query: 101 TNLEDR------DVLFIDEIHRLSII---VEEILYPAMEDFQLDLMVGEGPSARSVKINL 151
             L D+       ++F DEI  L+ +    ++ ++ ++    L LM G       V I  
Sbjct: 514 RLLFDQAYQMRPSIIFFDEIDGLAPVRSSRQDQIHSSIVSTLLALMDGLDSRGEIVVI-- 571

Query: 152 SRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAAC 209
                  AT R+  +   L+   RF      +  + E  K I++   +       D    
Sbjct: 572 ------GATNRLDSIDPALRRPGRFDREFLFSLPDKEARKEILKIHTRDWNPKPLDTFLE 625

Query: 210 EIAMRS 215
           E+A   
Sbjct: 626 ELAENC 631


>gi|3820564|gb|AAC84037.1| ATP-dependent zinc metallopeptidase FtsH [Heliobacillus mobilis]
          Length = 601

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 62/248 (25%), Positives = 90/248 (36%), Gaps = 27/248 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T E+  G  E    L+  ++  K         A+    VL  GPPG GKT LA+ VA E 
Sbjct: 156 TFEDVAGADEVKEELQEVVDFLKHPKKFVELGAKIPKGVLLFGPPGTGKTLLARAVAGEA 215

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG       V   A  +  L    +     ++FIDEI  +       L    +
Sbjct: 216 GVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNSPCIVFIDEIDAVGRQRGAGLGGGHD 275

Query: 131 DFQLD----LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
           + +      L+  +G SA    I      +IAAT R  +L   L    RF   I ++  +
Sbjct: 276 EREQTLNQLLVEMDGFSANEGII------IIAATNRPDILDPALLRPGRFDRQIVVDRPD 329

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           I   K I+    K   L  T +           T      ++      A     K +   
Sbjct: 330 IRGRKEILGVHVKGKPLDETIDLDVLARRTPGFTGADLANMVNEAALLAARRGTKKVGMH 389

Query: 245 IADAALLR 252
             + A+ R
Sbjct: 390 EMEDAIER 397


>gi|84624458|ref|YP_451830.1| cell division protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|84368398|dbj|BAE69556.1| cell division protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 648

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 86/246 (34%), Gaps = 23/246 (9%)

Query: 26  TLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  EA   +   +       +  K   +    VL VGPPG GKT LA+ +A E 
Sbjct: 165 TFADVAGCDEAKEEVGELVDFLRDPTKFTKLGGKIPRGVLMVGPPGTGKTLLAKAIAGEA 224

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  +    +     ++FIDEI  +       L    +
Sbjct: 225 KVPFFSISGSDFVEMFVGVGASRVRDMFEQAKKHAPCIIFIDEIDAVGRHRGAGLGGGHD 284

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E       +       +IAAT R  ++   L    RF   + +   +++
Sbjct: 285 EREQTLNQLLVEMDGFEGGEG----VIVIAATNRPDVVDPALLRPGRFDRQVVVGLPDVK 340

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++   +   LA               +      L      FA     K +  +  
Sbjct: 341 GREQILRVHMRKLPLADDVVPMVIARGTPGFSGADLANLCNEAALFAARGSEKEVRMDHF 400

Query: 247 DAALLR 252
           D A  +
Sbjct: 401 DRARDK 406


>gi|15790867|ref|NP_280691.1| proteasome-activating nucleotidase [Halobacterium sp. NRC-1]
 gi|169236613|ref|YP_001689813.1| proteasome-activating nucleotidase [Halobacterium salinarum R1]
 gi|20532214|sp|Q9HNP9|PAN2_HALSA RecName: Full=Proteasome-activating nucleotidase 2; Short=PAN 2;
           AltName: Full=Proteasomal ATPase 2; AltName:
           Full=Proteasome regulatory ATPase 2; AltName:
           Full=Proteasome regulatory particle 2
 gi|10581432|gb|AAG20171.1| ATP-dependent 26S proteinase regulatory subunit 4 homolog
           [Halobacterium sp. NRC-1]
 gi|167727679|emb|CAP14467.1| proteasome-activating nucleotidase [Halobacterium salinarum R1]
          Length = 411

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 45/211 (21%), Positives = 80/211 (37%), Gaps = 12/211 (5%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLED 105
           E    VL  GPPG GKT LA+ VA +   +F   +G  +        +  +  L    E 
Sbjct: 184 EPPSGVLLHGPPGTGKTMLAKAVANQTDASFIKMAGSELVRKFIGEGSRLVRDLFELAEQ 243

Query: 106 RD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
           +D  ++FIDEI  ++    +       D ++   + +  S            +IAAT R 
Sbjct: 244 KDPAIIFIDEIDAVAAKRTDSK--TSGDAEVQRTMMQLLSEMDGFDERGDIRIIAATNRF 301

Query: 164 GLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRI 221
            +L + +    RF   I +     +  + I++  A    +A + + +   A  +  +   
Sbjct: 302 DMLDSAILRPGRFDRLIEVPNPNPDARERILEIHAGEMNVADSVDFSDLAADTAEFSGAQ 361

Query: 222 AGRLLRRVRDFAEVAHAKTITREIADAALLR 252
              L      FA       + R+  D A  +
Sbjct: 362 LASLATEAGMFAIRDDRDEVHRQDFDDAYEK 392


>gi|226944901|ref|YP_002799974.1| ATP-dependent clp protease, ATP-binding subunit, ClipA [Azotobacter
           vinelandii DJ]
 gi|226719828|gb|ACO78999.1| ATP-dependent clp protease, ATP-binding subunit, ClipA [Azotobacter
           vinelandii DJ]
          Length = 756

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 62/294 (21%), Positives = 99/294 (33%), Gaps = 38/294 (12%)

Query: 30  FTGQVEACSNLKVFIEAAKARAEALD----HVLFVGPPGLGKTTLAQVVARELGVNFRST 85
             GQ  A  +L   I+ ++A  ++ D      LF GP G+GKT  A+ +A+ LGV     
Sbjct: 464 VFGQDAAIDSLATAIKLSRAGLKSPDKPVGSFLFAGPTGVGKTEAARQLAKALGVELVRF 523

Query: 86  SGPVIAKA---------------GDLAALLTNL---EDRDVLFIDEIHRLSIIVEEILYP 127
                 +                 D   LLT     +   VL +DEI +    V  +L  
Sbjct: 524 DMSEYMERHTVSRLIGAPPGYVGFDQGGLLTEAITKQPHCVLLLDEIEKAHPEVFNLLLQ 583

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIED 187
            M+   L    G     RSV I          TT  G  T     R  I   L  +  + 
Sbjct: 584 VMDHGTLTDNNGRKADFRSVIII--------MTTNAGAETAA---RASIGFTLQDHSSDA 632

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           ++ I ++          D       +       I  + L  ++   E  H +    E A 
Sbjct: 633 MEVI-KKSFTPEFRNRLDTIIQFGRLSHEVIKNIVDKFLTELQAQLEDKHVQLDVSERAR 691

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIE 301
             L     D     Q+  R +  + ++    P+  E +   L+E    +   +E
Sbjct: 692 GWLAEHGYDA----QMGARPMARLIQDRIKRPLAEEILFGELAEHGGVVHIDLE 741


>gi|315041877|ref|XP_003170315.1| ATP-dependent protease La [Arthroderma gypseum CBS 118893]
 gi|311345349|gb|EFR04552.1| ATP-dependent protease La [Arthroderma gypseum CBS 118893]
          Length = 1075

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 71/192 (36%), Gaps = 33/192 (17%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI   K R      +L FVGPPG+GKT++ + +AR L   +   S
Sbjct: 541 EDHYGLKDVKDRILEFIAVGKLRGTVEGKILCFVGPPGVGKTSIGKSIARSLNREYYRFS 600

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ ++    +        
Sbjct: 601 VGGLTDVAEIKGHRRTYVGALPGRIIQALKKCQTENPLILIDEVDKIGRGHQGDPASALL 660

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           + ++LS+   +        +  PL DR  + I L+ 
Sbjct: 661 ELLDPEQNSSFLD-------HYMDIPVDLSKVLFVCTANMTDTIPRPLLDRMEL-IELSG 712

Query: 183 YEIEDLKTIVQR 194
           Y  ++   I +R
Sbjct: 713 YVADEKMAIAER 724


>gi|308184501|ref|YP_003928634.1| DNA polymerase III subunits gamma and tau [Helicobacter pylori
           SJM180]
 gi|308060421|gb|ADO02317.1| DNA polymerase III subunits gamma and tau [Helicobacter pylori
           SJM180]
          Length = 589

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 77/256 (30%), Gaps = 59/256 (23%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA------- 75
           RP+   E  GQ      L + +   +         LF G  G GKT+ +++ A       
Sbjct: 9   RPKHFSELVGQESVAKTLSLALNNQRLANAY----LFSGLRGSGKTSSSRIFARALMCET 64

Query: 76  -----------------RELGVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFID 112
                                ++     G       D+  L+             +  ID
Sbjct: 65  GPKAVPCDTCTQCQSALNNHHIDIIEMDGASNRGIDDVRNLIEQTRYKPSFGRYKIFIID 124

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H  +      L   +E+                    S    + ATT    L   +  
Sbjct: 125 EVHMFTTEAFNALLKTLEE------------------PPSHVKFLLATTDALKLPATILS 166

Query: 173 R---FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           R   F          I  LKTI++       ++    A  ++A   +G+ R    LL + 
Sbjct: 167 RTQHFRFKKIPENSVISHLKTILE----KEQVSYESSALEKLAHSGQGSLRDTITLLEQA 222

Query: 230 RDFAEVAHAKTITREI 245
            ++ + A  ++   E+
Sbjct: 223 INYCDNAITESKVAEM 238


>gi|148244302|ref|YP_001218996.1| cell division protein FtsH [Candidatus Vesicomyosocius okutanii HA]
 gi|146326129|dbj|BAF61272.1| cell division protein FtsH [Candidatus Vesicomyosocius okutanii HA]
          Length = 640

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 88/249 (35%), Gaps = 23/249 (9%)

Query: 26  TLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  EA  ++   +       +  K   +    VL VGPPG GKT LA+ +A E 
Sbjct: 149 TFDDVAGVDEAKDDVSELVDFLSDPGKFTKVGGKIPKGVLLVGPPGTGKTLLAKAIAGEA 208

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F   SG       V   A  +  +    +     ++FIDEI  +       +    +
Sbjct: 209 DVPFFFISGSDFVEMFVGVGASRVRDMFEQAKKNAPCIIFIDEIDAVGRQRGAGMGGGHD 268

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  M+ E       +       +IAAT R  +L   L    RF   + +   +I 
Sbjct: 269 EREQTLNQMLVEMDGFEGSEG----VIVIAATNRPDVLDPALLRPGRFDRQVIVGLPDIN 324

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
               I++   +   +A   ++          +      L       A     K +  +  
Sbjct: 325 GRNAILKIHMRKLPIAKNVKSINIAKGTPGFSGADLANLTNEAALIAASKDKKLVGMQEF 384

Query: 247 DAALLRLAI 255
           + A  ++ +
Sbjct: 385 EKAKDKIMM 393


>gi|19553890|ref|NP_601892.1| cell division protein [Corynebacterium glutamicum ATCC 13032]
 gi|62391533|ref|YP_226935.1| cell-division protein (ATP-dependent Zn metallopeptidase)
           [Corynebacterium glutamicum ATCC 13032]
 gi|75368391|sp|Q6M2F0|FTSH_CORGL RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|41326875|emb|CAF20719.1| CELL-DIVISION PROTEIN (ATP-DEPENDENT ZN METALLOPEPTIDASE)
           [Corynebacterium glutamicum ATCC 13032]
          Length = 853

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 59/245 (24%), Positives = 89/245 (36%), Gaps = 21/245 (8%)

Query: 26  TLEEFTGQVEACSNL---KVFIEAAKARAEALD-----HVLFVGPPGLGKTTLAQVVARE 77
           T  +  G  EA   L   K F+E    R EAL       VL  GPPG GKT LA+ VA E
Sbjct: 163 TFADVAGAEEAVDELHEIKDFLE-DPTRYEALGAKIPRGVLLYGPPGTGKTLLARAVAGE 221

Query: 78  LGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
            GV F S SG       V   A  +  L    ++    ++F+DEI  +       +    
Sbjct: 222 AGVPFYSISGSDFVEMFVGVGASRVRDLFKQAKENSPCIIFVDEIDAVGRARGSGMGGGH 281

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
           ++ +  L   +         +     L+AAT R  +L   L    RF   I +   ++  
Sbjct: 282 DEREQTL--NQLLVEMDGFGDRQGVILMAATNRPDVLDPALLRPGRFDRQIPVTNPDLRG 339

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            + I++  AK    A   +        +  +      +L              IT +  +
Sbjct: 340 REQILEVHAKGKPFAPDADIKALAKRTAGMSGADLANVLNEAALLTARVGGNVITADALE 399

Query: 248 AALLR 252
            A  R
Sbjct: 400 EATDR 404


>gi|86143067|ref|ZP_01061489.1| hypothetical protein MED217_10492 [Leeuwenhoekiella blandensis
           MED217]
 gi|85830512|gb|EAQ48971.1| hypothetical protein MED217_10492 [Leeuwenhoekiella blandensis
           MED217]
          Length = 317

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 52/242 (21%), Positives = 87/242 (35%), Gaps = 29/242 (11%)

Query: 30  FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPV 89
             GQ E    + + I +         H L +G PGL KT +   +A+ LG++F+      
Sbjct: 25  IIGQNEVVDQIIISIFSG-------GHALLIGVPGLAKTLMVNTIAQALGLDFKRIQFTP 77

Query: 90  IAKAGDLAALLTNLEDRD-----------VLFIDEIHRLSIIVEEILYPAMEDFQLDLMV 138
                D+       E R            ++  DEI+R     +  L  AM++  + +  
Sbjct: 78  DLMPSDIVGAEILDESRTFKFLKGPVFANIVLADEINRTPPKTQAALLEAMQEKAVTVAG 137

Query: 139 GEGPSARSVKINLSRFTLIAATTRVGLLTNPL----QDRFGIPIRLNFYEIEDLKTIVQR 194
            + P      ++   F L          T PL     DRF   I L +   E+   IV+ 
Sbjct: 138 KQYP------LDKPYFVLATQNPIEQEGTYPLPEAQLDRFMFAINLVYPTYEEEVAIVKA 191

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254
                 +AV    + E  +  +   R    +   V ++A     KT   E A   +++  
Sbjct: 192 TTTEKSVAVEALFSAEDIVSYQQLIRR-IPVADNVVEYAVALVGKTRPAEDAAPQIVKDY 250

Query: 255 ID 256
           ID
Sbjct: 251 ID 252


>gi|315441748|ref|YP_004074627.1| ATPase AAA [Mycobacterium sp. Spyr1]
 gi|315260051|gb|ADT96792.1| AAA+ family ATPase [Mycobacterium sp. Spyr1]
          Length = 574

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 67/289 (23%), Positives = 103/289 (35%), Gaps = 35/289 (12%)

Query: 4   REGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARA-------EALDH 56
           RE LL+   S+ D  I L R +         E     +   + AK RA       +A  H
Sbjct: 280 RETLLAEAQSELDRQIGLTRVK---------EQIERYRAATQMAKVRAARGMKVAQASKH 330

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA-------------KAGDLAALLTNL 103
           ++F GPPG GKTT+A+VVA  L          +I               A   A  +   
Sbjct: 331 MIFTGPPGTGKTTIARVVANILAGLGVIGDPKLIETSRKDFVAEYEGQSAVKTARTIDRA 390

Query: 104 EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV-GEGPSARSVKINLSRFTLIAATTR 162
            D  VLFIDE + L    +    P   +    L+   E    R V I       I    R
Sbjct: 391 MDG-VLFIDEAYTLVQERDGRADPFGTEALDTLLARMENDRDRLVVIIAGYSNDID---R 446

Query: 163 VGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
           +    + L+ RF   I    Y  +++  I +  A     +++++AA  +   +    +  
Sbjct: 447 LLESNDGLRSRFATRIEFEPYTPQEIVDIAKVLAAGNDSSLSEDAAKHVLEAATLLTQST 506

Query: 223 GRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMI 271
               +   D A          E  +          + FD LD+  L+ I
Sbjct: 507 SNG-KPALDVAGNGRYARQLVEAGEQNRDMRLSRSLDFDNLDVETLSEI 554


>gi|319763182|ref|YP_004127119.1| ATP-dependent metalloprotease ftsh [Alicycliphilus denitrificans
           BC]
 gi|330825245|ref|YP_004388548.1| ATP-dependent metalloprotease FtsH [Alicycliphilus denitrificans
           K601]
 gi|317117743|gb|ADV00232.1| ATP-dependent metalloprotease FtsH [Alicycliphilus denitrificans
           BC]
 gi|329310617|gb|AEB85032.1| ATP-dependent metalloprotease FtsH [Alicycliphilus denitrificans
           K601]
          Length = 653

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 89/249 (35%), Gaps = 23/249 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAK-------ARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  EA   +K  ++  K               +L VGPPG GKT LA+ +A E 
Sbjct: 172 TFADVAGCDEAKEEVKEVVDFLKDPQKFQKLGGRIPRGLLLVGPPGTGKTLLAKSIAGEA 231

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  +  N +     ++FIDEI  +       L    +
Sbjct: 232 KVPFFSISGSDFVEMFVGVGAARVRDMFENAKKNAPCIIFIDEIDAVGRQRGAGLGGGND 291

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  M+ E     +         ++AAT R  +L   L    RF   + +   +I 
Sbjct: 292 EREQTLNQMLVEMDGFETNLG----VIVVAATNRPDILDAALLRPGRFDRQVYVTLPDIR 347

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I+    +   +      A         +      L       A   +A+T+  +  
Sbjct: 348 GREQILNVHMRKIPVGQDVNPAIIARGTPGMSGADLANLCNEAALMAARRNARTVEMQDF 407

Query: 247 DAALLRLAI 255
           + A  ++ +
Sbjct: 408 EKAKDKIIM 416


>gi|302660120|ref|XP_003021742.1| hypothetical protein TRV_04140 [Trichophyton verrucosum HKI 0517]
 gi|291185656|gb|EFE41124.1| hypothetical protein TRV_04140 [Trichophyton verrucosum HKI 0517]
          Length = 1067

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 71/192 (36%), Gaps = 33/192 (17%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI   K R      +L FVGPPG+GKT++ + +AR L   +   S
Sbjct: 532 EDHYGLKDVKDRILEFIAVGKLRGTVEGKILCFVGPPGVGKTSIGKSIARALNREYYRFS 591

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ ++    +        
Sbjct: 592 VGGLTDVAEIKGHRRTYVGALPGRIIQALKKCQTENPLILIDEVDKIGRGHQGDPASALL 651

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           + ++LS+   +        +  PL DR  + I L+ 
Sbjct: 652 ELLDPEQNSSFLD-------HYMDIPVDLSKVLFVCTANMTDTIPRPLLDRMEL-IELSG 703

Query: 183 YEIEDLKTIVQR 194
           Y  ++   I +R
Sbjct: 704 YVADEKMAIAER 715


>gi|257461255|ref|ZP_05626352.1| ATP-dependent protease La [Campylobacter gracilis RM3268]
 gi|257441283|gb|EEV16429.1| ATP-dependent protease La [Campylobacter gracilis RM3268]
          Length = 835

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 80/226 (35%), Gaps = 36/226 (15%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA----------------ALL 100
           + F GPPG+GKT+LA  +A  L       +   +    +L                  L+
Sbjct: 365 LCFYGPPGVGKTSLANSIATALKRKLIRIALGGLEDVNELRGHRRTYIGAMPGRIVQGLI 424

Query: 101 TNLEDRDVLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKINLS 152
              +   V+ +DEI ++S   +        EIL P       D  +       +  I+LS
Sbjct: 425 EANQMNPVIVLDEIDKISSSYKGDPTAVLLEILDPEQNSSFRDYYL-------NFNIDLS 477

Query: 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIA 212
           +   IA    V L+  PL+DR    I L+ Y  ++   I    AK   +    +     +
Sbjct: 478 KIIFIATANDVSLIPAPLRDRMEF-IELSSYTPQEKFQI----AKDYLIPQELQRHGLKS 532

Query: 213 MRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKM 258
                 P     ++      + V + +     I     +++  DK 
Sbjct: 533 ADVAINPAALAEIIEEYTRESGVRNLRRQIAAIFRKVAVKILKDKE 578


>gi|257387828|ref|YP_003177601.1| ATPase AAA [Halomicrobium mukohataei DSM 12286]
 gi|257170135|gb|ACV47894.1| AAA family ATPase, CDC48 subfamily [Halomicrobium mukohataei DSM
           12286]
          Length = 740

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 60/286 (20%), Positives = 107/286 (37%), Gaps = 34/286 (11%)

Query: 20  SLLR------PR-TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPG 64
           S +R      P+ + ++  G  +A   ++  +E      E            VL  GPPG
Sbjct: 447 SAMREVLVELPKISWDDVGGLDDAKEQVQESVEWPMNSPEKFERMGVSPPSGVLLYGPPG 506

Query: 65  LGKTTLAQVVARELGVNFRSTSGP--VIAKAGDLAALLTNLEDR------DVLFIDEIHR 116
            GKT +A+ VA E   NF S  GP  +    G+    +     +       V+F DE+  
Sbjct: 507 TGKTLMAKAVANETDANFISVRGPQLLSKWVGESEKAIRQTFRKARQVAPTVIFFDELDS 566

Query: 117 LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RF 174
           L+          + +  ++ ++ E      ++       +I AT R  ++   L    RF
Sbjct: 567 LAPGRGGETGSNVSERVVNQLLTELDGLEEME----EVMVIGATNRPDMIDPALIRSGRF 622

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
              + +    IE  + I++     T L+  D +  E+A  + G   +   L    R+ A 
Sbjct: 623 DRLVMVGEPGIEGREQILKIHTDDTPLS-PDVSLRELAEMTDG--YVGSDLESIGREAAI 679

Query: 235 VAHAKTITREIADAALLRLAIDKMGFDQLD--LRYLTMIARNFGGG 278
            A  +    E+ +    R A++ +     D    Y   +   F GG
Sbjct: 680 EALREDDDAEMVEMRHFRQAMENVRPTITDDIRDYYEQMQDEFKGG 725



 Score = 52.4 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 50/199 (25%), Positives = 74/199 (37%), Gaps = 23/199 (11%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLT 101
           K   E    VL  GPPG GKT LA+ VA E   +F S +GP I           L  +  
Sbjct: 217 KLGIEPPQGVLLHGPPGTGKTLLAKAVANETSASFFSIAGPEIISKYYGESEQQLREIFE 276

Query: 102 NLEDR--DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA 159
           +  +    ++FIDE+  ++   E++           L+            +  +  +IAA
Sbjct: 277 DASEEAPSIIFIDELDSIAPKREDVTGEVERRVVAQLLTM-----MDGLESRGQVIVIAA 331

Query: 160 TTRVGLLTNPLQ-----DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEI--- 211
           T RV  +   L+     DR       +    E++  I  RG  L+        A E    
Sbjct: 332 TNRVDSVDPALRRPGRFDREIEIGVPDEVGREEILQIHTRGMPLSDDVALSNLATETHGF 391

Query: 212 --AMRSRGTPRIAGRLLRR 228
             A     T   A + LRR
Sbjct: 392 VGADIESLTKEAAMKALRR 410


>gi|255280597|ref|ZP_05345152.1| cell division protein FtsH [Bryantella formatexigens DSM 14469]
 gi|255269062|gb|EET62267.1| cell division protein FtsH [Bryantella formatexigens DSM 14469]
          Length = 609

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 92/243 (37%), Gaps = 22/243 (9%)

Query: 27  LEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
             +  G+ EA  +L   +       +  +  A     +L VGPPG GKT LA+ VA E  
Sbjct: 164 FSDVAGEDEAKESLTEIVDYLHNPQKYTEVGASMPKGLLLVGPPGTGKTMLAKAVAGEAN 223

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME- 130
           V F S SG           A  +  L    +++   ++FIDEI  +    +  L    E 
Sbjct: 224 VPFFSISGSEFVEMFVGMGASKVRDLFKQAKEKAPCIVFIDEIDAIGKKRDGQLGGNDER 283

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
           +  L+ ++ E               ++AAT R   L   L    RF   + +   +++  
Sbjct: 284 EQTLNQLLTEMDGFEGNNG----VIILAATNRPESLDPALTRPGRFDRRVPVELPDLKGR 339

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           + I++  AK   LA   +      M S  +      ++      A  +  K + +   + 
Sbjct: 340 EEILKVHAKKIKLADDVDFHTIARMASGASGAELANIVNEAALRAVRSGRKVVNQSDLEE 399

Query: 249 ALL 251
           ++ 
Sbjct: 400 SIE 402


>gi|241959264|ref|XP_002422351.1| ATPase of the CDC48/PAS1/SEC18 (AAA) family, putative [Candida
           dubliniensis CD36]
 gi|223645696|emb|CAX40357.1| ATPase of the CDC48/PAS1/SEC18 (AAA) family, putative [Candida
           dubliniensis CD36]
          Length = 769

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 45/218 (20%), Positives = 77/218 (35%), Gaps = 35/218 (16%)

Query: 20  SLLR------PR-TLEEFTGQVEACSNLKVFIEAAKARAEALDH-----------VLFVG 61
           S +R      P+    +  GQ E     +  IE  +   EA D            VL  G
Sbjct: 487 SAMREIFLEMPKVHWSDIGGQDELK---RKLIEVVQLPLEASDSFKNLGVSSPKGVLLYG 543

Query: 62  PPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DVLFIDE 113
           PPG  KT  A+ +A E G+NF +  GP I     G+    +  +  +       ++F DE
Sbjct: 544 PPGCSKTLTAKALATESGLNFLAVKGPEIFNKYVGESERTIREIFRKARAASPSIIFFDE 603

Query: 114 IHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD- 172
           I  ++   +           L  ++ E          L    ++ AT +   +   L   
Sbjct: 604 IDAIAGDRDGDSSTTAASNVLTSLLNEIDGVE----ELKGVVIVGATNKPTEIDPALLRP 659

Query: 173 -RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAAC 209
            R    I +   + +    I+Q+  +   L   D++  
Sbjct: 660 GRLDRHIYVAPPDYDARLQILQKCCRKFNLHSGDKSVD 697



 Score = 52.0 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 76/223 (34%), Gaps = 23/223 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEA--------AKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           T ++  G  +    LK  IE         +         +L  GPPG GKT L + VA  
Sbjct: 230 TYDQVGGLSKQIELLKSTIELPLNNPTLFSDFGISPPRGILLHGPPGTGKTMLLRCVANS 289

Query: 78  L-GVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPA 128
           +   +  + +GP I           +  +    +     ++F+DEI  ++          
Sbjct: 290 ITEAHVLTINGPSIVSKYLGETENAIRDIFNEAKKFQPSIVFMDEIDSIAPSRTSDDAGE 349

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
            E   +  ++           +  R  ++ AT R   + + L+   RF   + +   ++E
Sbjct: 350 TESRVVAQLLT----VMDGMGDNGRIVVVGATNRPNSIDSALRRPGRFDQEVEIGIPDVE 405

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
             + I+ +               EIA  +  T    G  L  +
Sbjct: 406 AREEILTKQFARMNPEKCQITKEEIANIASKTHGYVGADLTAL 448


>gi|255946187|ref|XP_002563861.1| Pc20g13830 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211588596|emb|CAP86712.1| Pc20g13830 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1116

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 49/262 (18%), Positives = 92/262 (35%), Gaps = 38/262 (14%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI   K R      +L  VGPPG+GKT++ + +AR L   +   S
Sbjct: 580 EDHYGLKDVKDRILEFIAVGKLRGTVEGKILCLVGPPGVGKTSIGKSIARALNRQYYRFS 639

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ ++    +        
Sbjct: 640 VGGLTDVAEIKGHRRTYVGALPGRIIQALKKCQTENPLILIDEVDKIGRGHQGDPSSALL 699

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P   +  LD           V ++LS+   +        +  PL DR  + I L+ 
Sbjct: 700 ELLDPEQNNSFLD-------HYMDVPVDLSKVLFVCTANVTDTIPRPLLDRMEL-IELSG 751

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
           Y  ++   I +R       A  D    +          I   L++     + V + K   
Sbjct: 752 YVADEKMAIAER---YLAPAARDVTGLKDVDVKLERDAI-EELIKSYCRESGVRNLKKQI 807

Query: 243 REIADAALLRLAIDKMGFDQLD 264
            ++   A  ++  D +G D + 
Sbjct: 808 EKVYRKAAFKIVQD-LGEDVMS 828


>gi|148703168|gb|EDL35115.1| spermatogenesis associated 5, isoform CRA_a [Mus musculus]
          Length = 893

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 84/243 (34%), Gaps = 34/243 (13%)

Query: 29  EFTGQVEACSNLKVFIEAAK---ARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
           +  G     S LK   E  +    + E            +L  GPPG GKT +A+ VA E
Sbjct: 353 DMIG--GLNSQLKAIREIIELPLKQPELFKSYGIPAPRGLLLYGPPGTGKTMIARAVANE 410

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIV---EEILY 126
           +G      +GP I           L  +      R   ++FIDE+  L       +  + 
Sbjct: 411 VGAYVSVINGPEIISKFYGETEARLRQIFAEATLRHPSIIFIDELDALCPKREGAQSEVE 470

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
             +    L LM G G           R  ++ AT R   L   L+   RF   I +    
Sbjct: 471 KRVVASLLTLMDGIGSEGSEG-----RVLVLGATNRPQALDAALRRPGRFDKEIEIGIPN 525

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            +D   I+Q   KL           E+   +       G  L+ + + A +   + + R+
Sbjct: 526 AQDRLDILQ---KLLRRVPHLLTKAELLRLANNAHGYVGADLKALCNEAGLHALRRVLRK 582

Query: 245 IAD 247
             +
Sbjct: 583 QPN 585



 Score = 51.6 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 66/186 (35%), Gaps = 21/186 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
           +  +  G       LK  +E      +            VL  GPPG  KT +A+ +A E
Sbjct: 625 SWSDIGGLENIKLKLKQAVEWPLKHPKSFNRMGIQPPKGVLLYGPPGCSKTMIAKALANE 684

Query: 78  LGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAM 129
            G+NF +  GP +     G+    +  +  +       ++F DE+  L++          
Sbjct: 685 SGLNFLAIKGPELMNKYVGESERAVREIFRKARAVAPSIIFFDELDALAVERGSSSGAGN 744

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                D ++ +  +       L   T++AAT R   +   L    R    I +   +   
Sbjct: 745 ---VADRVLAQLLTEMDGIEQLKNVTVLAATNRPDRIDKALMRPGRIDRIIYVPLPDAAT 801

Query: 188 LKTIVQ 193
            + I+ 
Sbjct: 802 RREILN 807


>gi|138894833|ref|YP_001125286.1| stage V sporulation protein K [Geobacillus thermodenitrificans
           NG80-2]
 gi|134266346|gb|ABO66541.1| Stage V sporulation protein K [Geobacillus thermodenitrificans
           NG80-2]
          Length = 305

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 58/281 (20%), Positives = 99/281 (35%), Gaps = 54/281 (19%)

Query: 25  RTLEEFTGQVEACSNLKVFI----------EAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           + L++  G       +K             E          H++F G PG GKTT+A+++
Sbjct: 42  KELDQLIGLDHVKKIVKEIYAWLYISRRRKENGLKANRQALHMIFKGNPGTGKTTVARLL 101

Query: 75  AR--------ELGVNFRSTSGPVIAK-----AGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
            +          G    +    ++ +     A     L+       VLFIDE + L+   
Sbjct: 102 GKLFFEMNVLSKGHFIEAERADLVGEYIGHTANKTRDLIKKARGG-VLFIDEAYSLARGG 160

Query: 122 E--------EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           E        + L   MED+  DL+V      R +   LS             L   L  R
Sbjct: 161 EKDFGKEAIDTLVKGMEDYCDDLVVILAGYPREMDYFLS-------------LNPGLPSR 207

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
           F + I    Y +E+L  I ++  +     +T EA  ++ +   GT   AGR+        
Sbjct: 208 FPLTIEFPDYTVEELVQIAKQMLREREYEMTPEAERKLYVHLEGTLEAAGRMKFS----- 262

Query: 234 EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARN 274
                    R + + A+ + A+  +   + D + L  I   
Sbjct: 263 ----NGRYVRNLIEKAIRKQAVRLLHEGRYDKKELMTIRDR 299


>gi|254553468|ref|NP_067318.2| spermatogenesis-associated protein 5 isoform 2 [Mus musculus]
 gi|123252474|emb|CAM25219.1| spermatogenesis associated 5 [Mus musculus]
 gi|123294948|emb|CAM21041.1| spermatogenesis associated 5 [Mus musculus]
          Length = 892

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 84/243 (34%), Gaps = 34/243 (13%)

Query: 29  EFTGQVEACSNLKVFIEAAK---ARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
           +  G     S LK   E  +    + E            +L  GPPG GKT +A+ VA E
Sbjct: 352 DMIG--GLNSQLKAIREIIELPLKQPELFKSYGIPAPRGLLLYGPPGTGKTMIARAVANE 409

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIV---EEILY 126
           +G      +GP I           L  +      R   ++FIDE+  L       +  + 
Sbjct: 410 VGAYVSVINGPEIISKFYGETEARLRQIFAEATLRHPSIIFIDELDALCPKREGAQSEVE 469

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
             +    L LM G G           R  ++ AT R   L   L+   RF   I +    
Sbjct: 470 KRVVASLLTLMDGIGSEGSEG-----RVLVLGATNRPQALDAALRRPGRFDKEIEIGIPN 524

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            +D   I+Q   KL           E+   +       G  L+ + + A +   + + R+
Sbjct: 525 AQDRLDILQ---KLLRRVPHLLTKAELLRLANNAHGYVGADLKALCNEAGLHALRRVLRK 581

Query: 245 IAD 247
             +
Sbjct: 582 QPN 584



 Score = 51.6 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 66/186 (35%), Gaps = 21/186 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
           +  +  G       LK  +E      +            VL  GPPG  KT +A+ +A E
Sbjct: 624 SWSDIGGLENIKLKLKQAVEWPLKHPKSFNRMGIQPPKGVLLYGPPGCSKTMIAKALANE 683

Query: 78  LGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAM 129
            G+NF +  GP +     G+    +  +  +       ++F DE+  L++          
Sbjct: 684 SGLNFLAIKGPELMNKYVGESERAVREIFRKARAVAPSIIFFDELDALAVERGSSSGAGN 743

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                D ++ +  +       L   T++AAT R   +   L    R    I +   +   
Sbjct: 744 ---VADRVLAQLLTEMDGIEQLKNVTVLAATNRPDRIDKALMRPGRIDRIIYVPLPDAAT 800

Query: 188 LKTIVQ 193
            + I+ 
Sbjct: 801 RREILN 806


>gi|113868363|ref|YP_726852.1| DNA polymerase III subunits gamma and tau [Ralstonia eutropha H16]
 gi|113527139|emb|CAJ93484.1| DNA polymerase III tau/gamma subunit [Ralstonia eutropha H16]
          Length = 784

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 82/230 (35%), Gaps = 24/230 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN 81
           RPR      GQ      L   +E      + L H  LF G  G+GKTTL++++A+ L   
Sbjct: 35  RPRDFTTLVGQEHVVRALTHALE-----QQRLHHAYLFTGTRGVGKTTLSRILAKALNCT 89

Query: 82  FRSTSGPVIAKA-GDLAALLTNLEDRDVLFID-------EIHRLSIIVEEILYPAMEDFQ 133
               +G + A+  G   A       R V +I+        +  ++ ++++ +Y       
Sbjct: 90  GPDGNGGITAQPCGQCKACQEIDSGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTSGRF 149

Query: 134 LDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184
              M+ E             ++++        I ATT    +   +  R  +   L    
Sbjct: 150 KVYMIDEVHMLTNHAFNAMLKTLEEPPGHVKFILATTDPQKIPVTVLSRC-LQFNLKQMP 208

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
              + + +       G+     A   +A  + G+ R A  L  +   ++ 
Sbjct: 209 PGHIVSHLDHILAQEGIGHDGNALRLLAQAAHGSMRDALSLTDQAIAYSA 258


>gi|85375691|ref|YP_459753.1| cell division cycle protein [Erythrobacter litoralis HTCC2594]
 gi|84788774|gb|ABC64956.1| Cell division cycle protein [Erythrobacter litoralis HTCC2594]
          Length = 772

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 72/184 (39%), Gaps = 25/184 (13%)

Query: 28  EEFTGQVEACSNLKVFIEA--------AKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           ++  G  +    L+  +E          +   +    VL  GPPG GKT LAQ VA E  
Sbjct: 206 DDVGGIDDTIQQLREMVELPLRYPELFTRLGVDPPKGVLLHGPPGTGKTRLAQAVANESD 265

Query: 80  VNFRSTSGPVIAKA------GDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAMED 131
            NF   +GP I  +        L  +  N       ++FIDEI  ++   + +   A + 
Sbjct: 266 ANFSIINGPEIMGSGYGDSEKALREVFENASKNAPAIIFIDEIDSIAPKRDRVAGEAEKR 325

Query: 132 FQLDLMV-GEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
               L+   +G  AR      +   +IAAT R   +   L+   RF   I +   +    
Sbjct: 326 LVAQLLTLMDGLEAR------ANVVVIAATNRPDAIDEALRRPGRFDREIVIGVPDENGR 379

Query: 189 KTIV 192
           + I+
Sbjct: 380 REIL 383



 Score = 40.4 bits (93), Expect = 0.37,   Method: Composition-based stats.
 Identities = 56/266 (21%), Positives = 87/266 (32%), Gaps = 24/266 (9%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVARELG 79
            +  G  +A   LK  IE      EA            L  GPPG GKT LA+ VA+E  
Sbjct: 479 ADIGGVDDAIEKLKEGIELPLKNQEAFRRLGIRPAKGFLLYGPPGTGKTLLAKAVAKEAE 538

Query: 80  VNFRSTSGPVIAKA--GDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAMED 131
            NF S     +     G+    +  +  R       V+FIDEI  L              
Sbjct: 539 ANFISMKSSDLLSKWYGESEQQIAKMFRRARSVSPCVVFIDEIDSLVPARGSGQGEPQVT 598

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
            ++   +            L    +I AT R  L+   L    RF   + +   + +  +
Sbjct: 599 GRVVNTILAE---MDGLEELQSVVVIGATNRPALVDPALLRPGRFDELVYVGTPDPKGRE 655

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            I++       LA   + A       R T      ++RR    A +  A    +++  A 
Sbjct: 656 HILRIHTGAMPLADDIDLAKIAKETVRFTGADLEDVVRRA-GLAALHRAGAEVKQVTGAD 714

Query: 250 LLRLAIDKMG--FDQLDLRYLTMIAR 273
                 D       +++  Y  M   
Sbjct: 715 FAEALEDSRATVTSKMEAEYKKMRGE 740


>gi|332673481|gb|AEE70298.1| DNA polymerase III, gamma/tau subunit DnaX [Helicobacter pylori 83]
          Length = 566

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/256 (16%), Positives = 77/256 (30%), Gaps = 59/256 (23%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA------- 75
           RP+   E  GQ      L + ++  +         LF G  G GKT+ +++ A       
Sbjct: 9   RPKHFSELVGQESVAKTLSLALDNQRLANAY----LFSGLRGSGKTSSSRIFARALMCEE 64

Query: 76  -----------------RELGVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFID 112
                                ++     G       D+  L+             +  ID
Sbjct: 65  GPKAVPCDTCTQCQSALNNHHIDIIEMDGASNRGIDDVRNLIEQTRYKPSFGRYKIFIID 124

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H  +          +E+                    S    + ATT    L   +  
Sbjct: 125 EVHMFTTEAFNAFLKTLEE------------------PPSHVKFLLATTDALKLPATILS 166

Query: 173 R---FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           R   F          I  LKTI++       ++    A  ++A   +G+ R    LL + 
Sbjct: 167 RTQHFRFKKIPENSVISHLKTILE----KEQVSYETSALEKLAHSGQGSLRDTITLLEQA 222

Query: 230 RDFAEVAHAKTITREI 245
            ++ + A  ++   E+
Sbjct: 223 INYCDNAITESKVAEM 238


>gi|328773643|gb|EGF83680.1| hypothetical protein BATDEDRAFT_8414 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 531

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 76/230 (33%), Gaps = 22/230 (9%)

Query: 39  NLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--AKAGD- 95
            L+     ++   +    VL  GPPG+GKT++   VA          +   +     G+ 
Sbjct: 32  PLRYAKTLSRLNIDVPKAVLLSGPPGVGKTSVVSSVAEACQAKLFVINASDVFGGGIGES 91

Query: 96  ---LAALLTNLEDRD--------VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSA 144
              L                   +LFIDEI  L+   E              MV +  + 
Sbjct: 92  EERLRQRFDEARKATVQFPNDPVILFIDEIDVLAPRREG------NSSGSTTMVAQFLTL 145

Query: 145 RSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLA 202
               +   R  ++AAT R   L   L+   RF   I +NF        I++   K   L+
Sbjct: 146 MDGMMGRGRVFIVAATNRSSALDPALRRPGRFDREIVMNFPSESQRLEILRELTKKLKLS 205

Query: 203 VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252
            T +                  L R     + ++ +   T++  D AL +
Sbjct: 206 PTVDLFRLSVTTIGYVGADLAALCREAALLSALSSSIVTTQDHFDIALKK 255



 Score = 43.9 bits (102), Expect = 0.032,   Method: Composition-based stats.
 Identities = 41/207 (19%), Positives = 80/207 (38%), Gaps = 10/207 (4%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRD--VLFIDEI 114
           +L  GPPG  KTTL + VA     +F + +   +  A  + +L          V+FIDE+
Sbjct: 312 ILMYGPPGCSKTTLVRTVASTSNASFFTLNTASLYSAYLVRSLFQRARSASPAVVFIDEV 371

Query: 115 HRL---SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ 171
             +     +  E    A+++  L  ++ E     S    L    ++AAT R  L+   L 
Sbjct: 372 DTIIGKRSMGTEGTGDAVQERILSSLLNEMDGIESAAGVL----VLAATNRPDLIDEALL 427

Query: 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231
            R G   R+ +          QR  ++    +       +   +       G  L+ +  
Sbjct: 428 -RPGRFDRVVYVPPPSDTLARQRILEIYTTGMLLCPKLNLEDVASQCEMYTGADLKSLCR 486

Query: 232 FAEVAHAKTITREIADAALLRLAIDKM 258
            A +   ++   E+ + ++  + +D+ 
Sbjct: 487 EAALCAIRSSQSELVNHSMFSMKMDEW 513


>gi|226470306|emb|CAX70433.1| YME1-Like (Mitochondrial Escape) AAA protease [Schistosoma
           japonicum]
          Length = 627

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/245 (18%), Positives = 82/245 (33%), Gaps = 23/245 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
              +  G  E    L+  +E  +   E  +H        VL VGPPG+GKT LA+ V+ E
Sbjct: 164 NFGDVQGCDEVKKELQDIVEFLRN-PEKFNHIGAKLPKGVLLVGPPGVGKTLLAKAVSGE 222

Query: 78  LGVNFRSTSGPVIA------KAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
             V F   SG           A  +  L    +     ++FIDEI  +        +   
Sbjct: 223 AQVPFLYVSGSSFEEVFVGLGASRVRQLFAAAKQNSPCLIFIDEIDSVGRNRTSSPHHPY 282

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            +  ++ ++ E    +S +       ++ AT +   L   L    RF + I ++    E 
Sbjct: 283 ANQTINQLLAEMDGFQSTEG----IIVLGATNQAEDLDKALLRPGRFDVQIFVSPPTYEG 338

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
              ++    +        +           T      L+ +    A + +   +      
Sbjct: 339 RMALLSLYLRKVKTGPNIDIEKLAHGTVGYTGADIQNLVNQAAIAAGLHNDPVVEMHHLW 398

Query: 248 AALLR 252
            A  R
Sbjct: 399 EARDR 403


>gi|253741395|gb|EES98266.1| 26S proteasome ATPase subunit S4, putative [Giardia intestinalis
           ATCC 50581]
          Length = 447

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 53/142 (37%), Gaps = 21/142 (14%)

Query: 3   DREGLLSRNVSQEDADISLL----RPR-TLEEFTGQVEACSNLKVFIEAAKARAE----- 52
            R+ ++      ED +++++    RP+ T  +  GQ EA   L+  I+      E     
Sbjct: 163 HRDIVVGVLSHDEDPNVTMMKVVERPKDTYADVGGQDEAIKELRETIQLPLTNPEYFVDL 222

Query: 53  ---ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNL 103
                   +  GP G GK+ LA+  A E    +   +G  +           +  L    
Sbjct: 223 GIEPPRSCILHGPSGTGKSLLARACANETSACYMKMAGSELIQKYSGEGPRLVRELFKAA 282

Query: 104 E--DRDVLFIDEIHRLSIIVEE 123
           +     ++FIDE+  +     +
Sbjct: 283 KANQPTIIFIDEVDAVGRKRYD 304


>gi|254441752|ref|ZP_05055245.1| ATP-dependent metallopeptidase HflB subfamily [Octadecabacter
           antarcticus 307]
 gi|198251830|gb|EDY76145.1| ATP-dependent metallopeptidase HflB subfamily [Octadecabacter
           antarcticus 307]
          Length = 628

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 57/245 (23%), Positives = 102/245 (41%), Gaps = 27/245 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  EA   L+  +E        ++   +     L VGPPG GKT LA+ +A E 
Sbjct: 141 TFDDVAGIDEAKEELEEIVEFLRNPQKFSRLGGKIPKGALLVGPPGTGKTLLARAIAGEA 200

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F + SG       V   A  +  +    +     ++FIDEI  +       +    +
Sbjct: 201 GVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKNAPCIIFIDEIDAVGRARGVGMGGGND 260

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E     + +       +IAAT R  +L   L    RF   + ++  +I+
Sbjct: 261 EREQTLNQLLVEMDGFEANEG----VIIIAATNRKDVLDPALLRPGRFDRQVTVSNPDIK 316

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I+   A+ T L        ++ + +RG+P  +G  L  + + A +  A+   R +A
Sbjct: 317 GREKILGVHARKTPLGPD----VDLRIIARGSPGFSGADLANLVNEAALTAARIGRRFVA 372

Query: 247 DAALL 251
            A   
Sbjct: 373 MADFE 377


>gi|159471125|ref|XP_001693707.1| membrane AAA-metalloprotease [Chlamydomonas reinhardtii]
 gi|158283210|gb|EDP08961.1| membrane AAA-metalloprotease [Chlamydomonas reinhardtii]
          Length = 578

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 57/252 (22%), Positives = 99/252 (39%), Gaps = 34/252 (13%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAK-------ARAEALDHVLFVGPPGLGKTTLAQVVARE 77
               +  G  EA   L+  +E  +          +    VL VGPPG GKT LA+ +A E
Sbjct: 148 TRFADVKGVDEAKHELEEIVEYLRDPHKFTGLGGKLPKGVLLVGPPGTGKTMLARAIAGE 207

Query: 78  LGVNFRSTSGPVIA------KAGDLAALLTNLEDRD--VLFIDEIHRL----SIIVEEIL 125
            GV F  TSG           A  +  L    +     ++FIDEI  +    +   ++ +
Sbjct: 208 AGVPFFYTSGSEFEEVFVGVGARRVRDLFAAAKKHAPCIIFIDEIDAIGGNRNPKDQQYM 267

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183
              +    ++L   +G  A    I      ++AAT    +L   L    RF   I +   
Sbjct: 268 RMTLNQMLVEL---DGFKATEGII------VVAATNFAEVLDKALVRPGRFDRHIVVPNP 318

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           ++E  K+I++        +       ++ + +R TP  +G  L  V + A +  AK+  +
Sbjct: 319 DVEGRKSILETHMAKIPKSAD----LDLGVIARATPGFSGADLANVVNVAALHAAKSGLK 374

Query: 244 EIADAALLRLAI 255
           E+   ++     
Sbjct: 375 EVGMRSMEYARD 386


>gi|146338365|ref|YP_001203413.1| putative vesicle-fusing ATPase [Bradyrhizobium sp. ORS278]
 gi|146191171|emb|CAL75176.1| putative Vesicle-fusing ATPase [Bradyrhizobium sp. ORS278]
          Length = 714

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 48/210 (22%), Positives = 82/210 (39%), Gaps = 14/210 (6%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLT 101
           +   +    +LF GPPG GKT LA+ +A E   +F   SGP I           L ++  
Sbjct: 212 RVGIDPPRGILFSGPPGTGKTLLARAIAYENKCSFFQISGPEIVAKHYGESEAQLRSVFE 271

Query: 102 NLEDR--DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA 159
               +   ++F+DE+  ++   E +      + ++   VG+  +      +    T+I A
Sbjct: 272 QARAKAPSIVFLDELDAIAPKREGLSGDRQVERRI---VGQLLTLMDGIRSRGAVTVIGA 328

Query: 160 TTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRG 217
           T     +   L+   RF   IR    + +  + I++  +K   L+  D     IA  S G
Sbjct: 329 TNLPDSIDPALRRPGRFDREIRFGAPDQQGRRQILEVHSKTMPLSQ-DVDLDHIARISHG 387

Query: 218 TPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
                   L R    A +     +T  I D
Sbjct: 388 YVGADLAALCREAGMAALRRVAKLTGAIED 417



 Score = 43.9 bits (102), Expect = 0.039,   Method: Composition-based stats.
 Identities = 34/146 (23%), Positives = 57/146 (39%), Gaps = 15/146 (10%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DV 108
           VL  G PG GKT LA+ +A E GVNF S  GP +           +  + +        +
Sbjct: 492 VLLHGAPGTGKTLLAKALATEAGVNFISVRGPQLLNQFLGESERAVRDVFSRARSSAPTI 551

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +F DEI  ++           +   +D +V +  +            L+ AT R+  +  
Sbjct: 552 IFFDEIDAIAPAR-----SGTDGGTMDRIVSQLLTEIDGIEEFKNVFLLGATNRIDCVDP 606

Query: 169 PLQD--RFGIPIRLNFYEIEDLKTIV 192
            L    RF   I++   +    + I+
Sbjct: 607 ALLRPGRFDHIIQMPLPDAAARQAIL 632


>gi|88658550|ref|YP_507694.1| ATP-dependent protease ATP-binding subunit [Ehrlichia chaffeensis
           str. Arkansas]
 gi|123492907|sp|Q2GFT9|CLPX_EHRCR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|88600007|gb|ABD45476.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ehrlichia
           chaffeensis str. Arkansas]
          Length = 406

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/124 (27%), Positives = 53/124 (42%), Gaps = 25/124 (20%)

Query: 25  RTLEEF-TGQVEACSNLKVFIEAAKARAEALD----------HVLFVGPPGLGKTTLAQV 73
           + L+E+  GQ  +   L V +     R   L           +VL +GP G GKT LA+ 
Sbjct: 66  KVLDEYVIGQEHSKKVLSVAVYNHYKRLSNLSVISEVEISKSNVLLIGPTGSGKTLLART 125

Query: 74  VARELGVNFRSTSGPVIAKAG----DLAALLTNL----------EDRDVLFIDEIHRLSI 119
           +AR L V F       + +AG    D+  +L  L            R +++IDE+ ++S 
Sbjct: 126 LARVLQVPFAMADATTLTEAGYVGEDVENILLKLLQAANFNVDAAQRGIIYIDEVDKISR 185

Query: 120 IVEE 123
             E 
Sbjct: 186 KSEN 189


>gi|14520405|ref|NP_125880.1| proteasome-activating nucleotidase [Pyrococcus abyssi GE5]
 gi|20532218|sp|Q9V287|PAN_PYRAB RecName: Full=Proteasome-activating nucleotidase; Short=PAN;
           AltName: Full=Proteasomal ATPase; AltName:
           Full=Proteasome regulatory ATPase; AltName:
           Full=Proteasome regulatory particle
 gi|5457620|emb|CAB49111.1| 26S protease regulatory subunit 4 [Pyrococcus abyssi GE5]
          Length = 399

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 51/268 (19%), Positives = 94/268 (35%), Gaps = 29/268 (10%)

Query: 23  RPR-TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQV 73
           RP  T  +  G  +    L+  IE      E            VL  GPPG GKT +A+ 
Sbjct: 134 RPNVTYNDIGGLKKQLQELREAIELPLKHPELFEEVGIDPPKGVLLYGPPGCGKTLMAKA 193

Query: 74  VARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEIL 125
           +A E+   F    G  +        A  +  L    +++   ++FIDEI  +     +  
Sbjct: 194 LAHEVNATFIRVVGSELVRKYIGEGARLVHELFELAKEKAPTIIFIDEIDAIGAKRMDE- 252

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183
                + +++  + +  +            +IAAT R  +L   L    RF   I +   
Sbjct: 253 -TTGGEREVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLP 311

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           + E    I++   +   L   D     + + +  T   +G  L+ +   A +   +    
Sbjct: 312 DFEGRLEILKVHTRRMKLKNVD-----LRVIAEITEGASGADLKAIATEAGMFAIRERRT 366

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMI 271
            +     L+     +G    + + L  I
Sbjct: 367 YVTQEDFLKAVDKVLG---NERKLLQQI 391


>gi|317499321|ref|ZP_07957593.1| ATP-dependent metallopeptidase HflB [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316893412|gb|EFV15622.1| ATP-dependent metallopeptidase HflB [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 672

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 55/257 (21%), Positives = 95/257 (36%), Gaps = 22/257 (8%)

Query: 26  TLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  GQ EA   L   +          +  A+     L VGPPG GKT LA+ VA E 
Sbjct: 172 TFADVAGQGEAKETLTEMVDFLHHPERYTEIGAKLPKGALLVGPPGTGKTLLAKAVAGEA 231

Query: 79  GVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           GV F S SG            ++  DL      +    ++FIDEI  +    +  ++   
Sbjct: 232 GVPFFSLSGSDFVEMFVGVGASRVRDLFKQAQQMAP-CIIFIDEIDAIGKSRDNGMHGGG 290

Query: 130 EDFQLDLMVGEGPSARSVKINLSR-FTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
            D +   +      A     + S+   ++AAT R  +L   L    RF   + +   +++
Sbjct: 291 NDEREQTLNAL--LAEMDGFDTSKGIIILAATNRPEVLDKALLRPGRFDRRVIVERPDLK 348

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
                ++  AK   +  T +        S         ++      A  A  K ++++  
Sbjct: 349 GRIETLKVHAKDVKMDETVDFEEIALATSGAVGSDLANMINEAALGAVKAGRKAVSQKDL 408

Query: 247 DAALLRLAIDKMGFDQL 263
             A+  +   K   D++
Sbjct: 409 FEAVEVVIAGKEKKDRI 425


>gi|297539173|ref|YP_003674942.1| ATP-dependent metalloprotease FtsH [Methylotenera sp. 301]
 gi|297258520|gb|ADI30365.1| ATP-dependent metalloprotease FtsH [Methylotenera sp. 301]
          Length = 631

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 53/250 (21%), Positives = 92/250 (36%), Gaps = 23/250 (9%)

Query: 25  RTLEEFTGQVEACSN-------LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
            T  +  G  EA          L+   +  K        VL VGPPG GKT LA+ +A E
Sbjct: 152 TTFADVAGCDEAKEEVTEIVEFLRDPTKFQKLGGRIPRGVLMVGPPGTGKTLLARAIAGE 211

Query: 78  LGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
             V F + SG       V   A  +  +  N +     ++FIDEI  +            
Sbjct: 212 AKVPFFTISGSDFVEMFVGVGASRVRDMFENAKKNSPCIIFIDEIDAVGRSRGSGTGGGN 271

Query: 130 EDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           ++ +  L  ++ E           S   +IAAT R  +L   L    RF   + ++  +I
Sbjct: 272 DEREQTLNQLLVEMDGFEGN----SGVIVIAATNRADVLDKALLRPGRFDRQVMVSLPDI 327

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           +  + I+    +   + V  +A          +      L+     FA   + +T+  + 
Sbjct: 328 KGREQILMVHMRKVPIDVDVKADILARGTPGFSGADLANLVNEAALFAARRNKRTVDMQD 387

Query: 246 ADAALLRLAI 255
            + A  ++ +
Sbjct: 388 FEDAKDKIFM 397


>gi|218201158|gb|EEC83585.1| hypothetical protein OsI_29256 [Oryza sativa Indica Group]
          Length = 837

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 53/282 (18%), Positives = 98/282 (34%), Gaps = 46/282 (16%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARELG 79
           ++  G  +  + ++  +E      +            +L  GPPG GKT LA+ +A E G
Sbjct: 215 DDVGGVRKQLAQIRELVELPLRHPKLFQTLGVRPPKGILLYGPPGTGKTLLARAIAAESG 274

Query: 80  VNFRSTSGPVIAK--AGDLAALLTNLEDR------DVLFIDEIHRLSIIVEE---ILYPA 128
            +F   +GP I     G+  A L  +          ++F+DEI  ++   E+    +   
Sbjct: 275 AHFVVVNGPEIMSGMPGESEANLRAVFAEADAAAPSIVFMDEIDSIAPSREKAHGEVERR 334

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           +    L LM G  P A+ + I         AT R   L   L+   RF   + +   +  
Sbjct: 335 VVSQLLTLMDGLRPRAQVIVI--------GATNRPNSLDPALRRFGRFDRELDIGVPDEL 386

Query: 187 DLKTIVQRGAKLTGLAVT--------DEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238
               I++   K   L+          D      +  +      A + +R   D  ++ + 
Sbjct: 387 GRLEILRIHTKNMPLSDDVDLERVGKDTHGFVGSDLASLCSEAAMQCIREKLDIIDIEND 446

Query: 239 K---------TITREIADAALLRLAIDKMGFDQLDLRYLTMI 271
                     T+T +    A+     D  G  ++       +
Sbjct: 447 TIDVEILNSLTVTMDHLKFAMEVSWDDIGGLGEVKRELQETV 488



 Score = 50.5 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 47/252 (18%), Positives = 86/252 (34%), Gaps = 22/252 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALD--------HVLFVGPPGLGKTTLAQVVARE 77
           + ++  G  E    L+  ++      E  D         VLF GPPG GKT +A+ +A+E
Sbjct: 470 SWDDIGGLGEVKRELQETVQYPVEHPEMFDLFGMSPSRGVLFYGPPGCGKTMMAKAIAKE 529

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
              NF S  GP +         G++  L          +LF DE+  +++     +  A 
Sbjct: 530 CKANFISIKGPELLTMWFGESEGNVRNLFDKARQSAPCILFFDELDSIAVKRGNSVGDA- 588

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                D ++ +  +            +I AT R  ++   +    R    I +   +   
Sbjct: 589 -GGTPDRVLNQLLTEMDGINAKKTVFVIGATNRPDIIDPAMLRPGRLDQLIYIPLPDASS 647

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA--EVAHAKTITREI 245
              I +       ++   +     A     +      + +R    A  EV    T+  + 
Sbjct: 648 RLEIFRANLHKAPMSRHVDLPAMAASTDGFSGADIKEICQRACKLAVREVVQKSTLVGKA 707

Query: 246 ADAALLRLAIDK 257
              A   L +D 
Sbjct: 708 LAMAGAELTVDH 719


>gi|209865725|gb|ACC66148.3| cell division cycle protein [Dimocarpus longan]
 gi|221327637|gb|ACM17483.1| cell division cycle protein [Dimocarpus longan]
          Length = 805

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/175 (25%), Positives = 62/175 (35%), Gaps = 35/175 (20%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------------VLFVGPPGLGKTTLA 71
            L+E  G  +     K   +  +     L H              +L  GPPG GKT +A
Sbjct: 201 RLDE-VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIA 259

Query: 72  QVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEE 123
           + VA E G  F   +GP I          +L       E     ++FIDEI  ++   E+
Sbjct: 260 RAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREK 319

Query: 124 ILYPA---MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
                   +    L LM G    A  + I         AT R   +   L+ RFG
Sbjct: 320 THGEVERRIVSQLLTLMDGLKSRAHVIVI--------GATNRPNTIDPALR-RFG 365



 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/255 (16%), Positives = 82/255 (32%), Gaps = 20/255 (7%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVARE 77
           + E+  G       L+  ++      E            VLF GPPG GKT LA+ +A E
Sbjct: 479 SWEDIGGLENVKRELQETVQYPVEHPERFEKFGMAPSKGVLFYGPPGCGKTLLAKAIANE 538

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
              NF S  GP +          ++  +          VLF DE+  ++      +  A 
Sbjct: 539 CQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDA- 597

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                D ++ +  +            +I AT R  ++   L    R    I +   + + 
Sbjct: 598 -GGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDS 656

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
              I +   + + ++   +           +      + +R   +A   + +        
Sbjct: 657 RHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRAVKYAIRENIEKDIERERR 716

Query: 248 AALLRLAIDKMGFDQ 262
                 A+D+   D 
Sbjct: 717 RRDNPEAMDEDVEDD 731


>gi|167043121|gb|ABZ07831.1| hypothetical protein ALOHA_HF4000ANIW141I9ctg2g19 [uncultured
          marine microorganism HF4000_ANIW141I9]
          Length = 118

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 4/60 (6%)

Query: 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
          RP+T  +  GQ      LK     A A+       +F GP GLGKTT+A+++ + +  + 
Sbjct: 25 RPQTFNDVVGQDHVTQTLK----NAFAKERIAHGYVFTGPRGLGKTTMARLMDKGMTCHN 80


>gi|118357902|ref|XP_001012199.1| ATP-dependent protease La [Tetrahymena thermophila]
 gi|89293966|gb|EAR91954.1| ATP-dependent protease La [Tetrahymena thermophila SB210]
          Length = 1117

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 64/187 (34%), Gaps = 28/187 (14%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDH-------VLFVGPPGLGKTTLAQVVARELGV 80
           +E  G  +        IE          H       +L  GPPG GKT++A+ VA+ L  
Sbjct: 511 DEIYGLEKVKE---RIIEMIAVNQMKNTHSKSKGFILLLQGPPGTGKTSIAKAVAKALQK 567

Query: 81  NFRSTSGPVIAKAG----------D------LAALLTNLEDRDVLFIDEIHRLSIIVE-- 122
             R  S   I+             D      +  L+       V  +DEI ++S      
Sbjct: 568 ENRFISFAGISDPSFFKGHRRTYVDSQPGVFIKELIKAQTMNPVFILDEIDKISKSSMGA 627

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           +  Y  ME    +           +K++ S    I     +  +  PL++R  I     +
Sbjct: 628 DPYYSLMEILNPEENNNFTDHYMDIKVDFSNTIFILTANNIMNMLEPLKNRLEIIDVPAY 687

Query: 183 YEIEDLK 189
            E E L+
Sbjct: 688 IEEEKLQ 694


>gi|4105619|gb|AAD02481.1| SPAF [Mus musculus]
          Length = 892

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 84/243 (34%), Gaps = 34/243 (13%)

Query: 29  EFTGQVEACSNLKVFIEAAK---ARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
           +  G     S LK   E  +    + E            +L  GPPG GKT +A+ VA E
Sbjct: 352 DMIG--GLNSQLKAIREIIELPLKQPELFKSYGIPAPRGLLLYGPPGTGKTMIARAVANE 409

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIV---EEILY 126
           +G      +GP I           L  +      R   ++FIDE+  L       +  + 
Sbjct: 410 VGAYVSVINGPEIISKFYGETEARLRQIFAEATLRHPSIIFIDELDALCPKREGAQSEVE 469

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
             +    L LM G G           R  ++ AT R   L   L+   RF   I +    
Sbjct: 470 KRVVASLLTLMDGIGSEGSEG-----RVLVLGATNRPQALDAALRRPGRFDKEIEIGIPN 524

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            +D   I+Q   KL           E+   +       G  L+ + + A +   + + R+
Sbjct: 525 AQDRLDILQ---KLLRRVPHLLTKAELLRLANNAHGYVGADLKALCNEAGLHALRRVLRK 581

Query: 245 IAD 247
             +
Sbjct: 582 QPN 584



 Score = 51.6 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 66/186 (35%), Gaps = 21/186 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
           +  +  G       LK  +E      +            VL  GPPG  KT +A+ +A E
Sbjct: 624 SWSDIGGLENIKLKLKQAVEWPLKHPKSFNRMGIQPPKGVLLYGPPGCSKTMIAKALANE 683

Query: 78  LGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAM 129
            G+NF +  GP +     G+    +  +  +       ++F DE+  L++          
Sbjct: 684 SGLNFLAIKGPELMNKYVGESERAVREIFRKARAVAPSIIFFDELDALAVERGSSSGAGN 743

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                D ++ +  +       L   T++AAT R   +   L    R    I +   +   
Sbjct: 744 ---VADRVLAQLLTEMDGIEQLKNVTVLAATNRPDRIDKALMRPGRIDRIIYVPLPDAAT 800

Query: 188 LKTIVQ 193
            + I+ 
Sbjct: 801 RREILN 806


>gi|15921478|ref|NP_377147.1| cell division control protein [Sulfolobus tokodaii str. 7]
 gi|15622264|dbj|BAB66256.1| 369aa long hypothetical cell division control protein [Sulfolobus
           tokodaii str. 7]
          Length = 369

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/204 (21%), Positives = 74/204 (36%), Gaps = 23/204 (11%)

Query: 9   SRNVSQEDADISLLRPR-TLEEFTGQVEACSNLKVFIEAAKARAEALD-----HVLFVGP 62
           S+ +  ED  +   +P+ + ++  G  +    LK  I     R +         +L  GP
Sbjct: 82  SKQIDIEDLIVKE-KPKVSFKDIVGLDDVKEALKEAIIYPTKRPDLFPLGWPRGILLYGP 140

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNL-------EDRDVL 109
           PG GKT +A  VA E+   F       I          ++A + T         E   ++
Sbjct: 141 PGCGKTMIAAAVASEIDSYFIQVDAASIMSKWLGEAEKNVAKIFTKAREISKREEKPVII 200

Query: 110 FIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169
           FIDE+  L  I        +      L   +G   +S      +  +I AT +   L  P
Sbjct: 201 FIDELDALLGIYNSENGGEVRVRNQFLKEMDGLQDKSENY---KVYVIGATNKPWRLDEP 257

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQ 193
              RF   I +   + +    ++Q
Sbjct: 258 FLRRFQKRIYVRLPDFQQRLALLQ 281


>gi|283783577|ref|YP_003374331.1| ATP-dependent metallopeptidase HflB [Gardnerella vaginalis 409-05]
 gi|298252656|ref|ZP_06976450.1| ATP-dependent zinc metallopeptidase involved in cell division
           [Gardnerella vaginalis 5-1]
 gi|283441441|gb|ADB13907.1| ATP-dependent metallopeptidase HflB [Gardnerella vaginalis 409-05]
 gi|297533020|gb|EFH71904.1| ATP-dependent zinc metallopeptidase involved in cell division
           [Gardnerella vaginalis 5-1]
          Length = 769

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 47/208 (22%), Positives = 78/208 (37%), Gaps = 12/208 (5%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108
           VL  GPPG GKT LA+ +A E GV F + +G       V   A  +  L    +     +
Sbjct: 263 VLLYGPPGTGKTLLARAIAGEAGVPFYAMAGSDFVEMFVGLGASRVRELFDEAKKNAPAI 322

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +FIDEI  +       +    ++ +  L   +         N +   +IAAT R  +L +
Sbjct: 323 IFIDEIDAVGRRRGSGMTGGHDEREQTL--NQLLVEMDGFDNDTNLIIIAATNRPDVLDS 380

Query: 169 PLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
            L    RF   + +   ++E  + I++  AK        +           T      +L
Sbjct: 381 ALLRPGRFDRQVAVEAPDLEGREAILKVHAKGKPFVPDVDLHMVAVRTPGFTGADLANVL 440

Query: 227 RRVRDFAEVAHAKTITREIADAALLRLA 254
                    + A+ I     D A+ R+ 
Sbjct: 441 NEAALLCARSGAQYIDNRAIDEAIDRVQ 468


>gi|226694318|sp|Q719N1|SPAST_PIG RecName: Full=Spastin
          Length = 613

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 47/237 (19%), Positives = 82/237 (34%), Gaps = 21/237 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDHV-------LFVGPPGLGKTTLAQVVAREL 78
             ++  GQ  A   L+  +     R E    +       L  GPPG GKT LA+ VA E 
Sbjct: 337 KFDDIAGQELAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES 396

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAME 130
              F + S   +           + AL     +    ++FIDE+  L     E  + A  
Sbjct: 397 NATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLRERREGEHDASR 456

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190
             + + ++              R  ++ AT R   L   +  RF   + ++    E    
Sbjct: 457 RLKTEFLIEFDG---VQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLL 513

Query: 191 IVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
           +++    L     +     E+A  +R T   +G  L  +   A +   + +  E   
Sbjct: 514 LLK---NLLCKQGSPLTQKELAQLARLTDGYSGSDLTALAKDAALGPIRELKPEQVK 567


>gi|167766201|ref|ZP_02438254.1| hypothetical protein CLOSS21_00695 [Clostridium sp. SS2/1]
 gi|167712281|gb|EDS22860.1| hypothetical protein CLOSS21_00695 [Clostridium sp. SS2/1]
          Length = 679

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 55/257 (21%), Positives = 95/257 (36%), Gaps = 22/257 (8%)

Query: 26  TLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  GQ EA   L   +          +  A+     L VGPPG GKT LA+ VA E 
Sbjct: 172 TFADVAGQGEAKETLTEMVDFLHHPERYTEIGAKLPKGALLVGPPGTGKTLLAKAVAGEA 231

Query: 79  GVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           GV F S SG            ++  DL      +    ++FIDEI  +    +  ++   
Sbjct: 232 GVPFFSLSGSDFVEMFVGVGASRVRDLFKQAQQMAP-CIIFIDEIDAIGKSRDNGMHGGG 290

Query: 130 EDFQLDLMVGEGPSARSVKINLSR-FTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
            D +   +      A     + S+   ++AAT R  +L   L    RF   + +   +++
Sbjct: 291 NDEREQTLNAL--LAEMDGFDTSKGIIILAATNRPEVLDKALLRPGRFDRRVIVERPDLK 348

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
                ++  AK   +  T +        S         ++      A  A  K ++++  
Sbjct: 349 GRIETLKVHAKDVKMDETVDFEEIALATSGAVGSDLANMINEAALGAVKAGRKAVSQKDL 408

Query: 247 DAALLRLAIDKMGFDQL 263
             A+  +   K   D++
Sbjct: 409 FEAVEVVIAGKEKKDRI 425


>gi|159478134|ref|XP_001697159.1| hypothetical protein CHLREDRAFT_176020 [Chlamydomonas reinhardtii]
 gi|158274633|gb|EDP00414.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 534

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 48/195 (24%), Positives = 78/195 (40%), Gaps = 18/195 (9%)

Query: 57  VLFVGPPGLGKTTLAQVV-ARELGVNFRSTSGPVIAK-----AGDLAALLTNLE--DRDV 108
           VLF GPPG GKTT A+V+ ++            V++K        L  +    E     +
Sbjct: 289 VLFEGPPGTGKTTSARVISSQAAVPLIYLPLEAVLSKWYGQSEQQLGQVFKAAEALGGAI 348

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +F+DE+  L    EE     +    L +++ E            +  +I AT R   L  
Sbjct: 349 IFLDELDALGGNREEGGMHEVSRRLLSVLLRE---MEGFDAETKKTVVIGATNRKTDLDP 405

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228
            L  RF + +     +    K I+++ A+    +       E+   +  TP ++GR LR 
Sbjct: 406 ALLSRFDLVLSFGLPDAACRKLILKQYAQQLSDS-------ELGQLAERTPGMSGRDLRD 458

Query: 229 VRDFAEVAHAKTITR 243
           V +  E   A  I R
Sbjct: 459 VCEHTERRWASKIIR 473


>gi|114327774|ref|YP_744931.1| cell division protein ftsH [Granulibacter bethesdensis CGDNIH1]
 gi|114315948|gb|ABI62008.1| cell division protein ftsH [Granulibacter bethesdensis CGDNIH1]
          Length = 642

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 55/249 (22%), Positives = 92/249 (36%), Gaps = 23/249 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAK-------ARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T E+  G  EA   L+  +E  K          +    VL VGPPG GKT LA+ +A E 
Sbjct: 155 TFEDVAGIDEAKGELQEIVEFLKDPQKFQRLGGKIPKGVLLVGPPGTGKTLLARAIAGEA 214

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F + SG       V   A  +  +    +     ++FIDEI  +       L    +
Sbjct: 215 NVPFFTISGSDFVEMFVGVGASRVRDMFEQGKKNAPCIIFIDEIDAVGRHRGAGLGGGND 274

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  M+ E     S +       LIAAT R  +L   L    RF   + +   ++ 
Sbjct: 275 EREQTLNQMLVEMDGFESNEG----VILIAATNRPDVLDPALLRPGRFDRQVVVPNPDVA 330

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++   +   LA   +           +      L+      A     +T++    
Sbjct: 331 GREKILRVHMRKVPLASDVDPKVIARGTPGFSGADLANLVNEAALLAARLSRRTVSMAEF 390

Query: 247 DAALLRLAI 255
           + A  ++ +
Sbjct: 391 EDAKDKVMM 399


>gi|13474589|ref|NP_106158.1| DNA polymerase III subunits gamma and tau [Mesorhizobium loti
           MAFF303099]
 gi|14025343|dbj|BAB51944.1| DNA polymerase III tau [Mesorhizobium loti MAFF303099]
          Length = 604

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 51/248 (20%), Positives = 88/248 (35%), Gaps = 25/248 (10%)

Query: 19  ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
               RP    E  GQ      +   +  A A        +  G  G+GKTT A+++AR L
Sbjct: 23  ARKYRPSNFSELVGQE----PMVRTLTNAFATGRIAQAWMLTGVRGVGKTTTARILARAL 78

Query: 79  GVNFRSTSGPVIAKA--GDLAALLTNLEDRDVLFID-----EIHRLSIIVEEILYPAMED 131
                +   P +  A  G+    +      DV+ +D      I  +  I+E + Y  +  
Sbjct: 79  NYKTATVDQPSVDLAVLGEHCQAIMEGRHVDVIEMDAASHTGIDDIRDIIERVRYAPVSA 138

Query: 132 FQLDLMVGE---------GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
                ++ E             ++++        I ATT +  +   +  R      L  
Sbjct: 139 RYKVYIIDEVHMLSTQAFNGLLKTLEEPPPHVKFIFATTEIRKVPITVLSRCQ-RFDLRR 197

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            +   L   +   A   G++V D+A   IA  + G+ R +  +L    D A    A  ++
Sbjct: 198 IDAGALVAHLSSIAAKEGISVDDDALAMIARAAEGSARDSLSIL----DQAIAHGAGAVS 253

Query: 243 REIADAAL 250
            E   A L
Sbjct: 254 AEAVRAML 261


>gi|322503495|emb|CBZ38580.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 784

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 74/195 (37%), Gaps = 23/195 (11%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHV--------LFVGPPGLGKTTLAQVVARELG 79
           ++  G  +  + ++  +E      E   ++        L  GPPG GKT +A+ VA E G
Sbjct: 194 DDIGGCRKQLNQIREMVELPIRHPELFKNIGIKPPRGILLYGPPGSGKTLIARAVANETG 253

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAMED 131
             F   +GP I          +L       E     ++FIDEI  ++   E+      + 
Sbjct: 254 AFFFLINGPEIMSKMAGESESNLRKAFEEAEKNAPAIIFIDEIDSIAPKREK-----AQG 308

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
                +V +  +      + S+  ++AAT R   +   L+   RF   + +   +     
Sbjct: 309 EVEKRIVSQLLTLMDGMKSRSQVIVMAATNRPNTIDPALRRFGRFDRELDIGVPDETGRL 368

Query: 190 TIVQRGAKLTGLAVT 204
            I++   K   LA  
Sbjct: 369 EIIRIHTKNMKLADD 383



 Score = 52.8 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 87/249 (34%), Gaps = 24/249 (9%)

Query: 28  EEFTGQVEACSNLKVFIEAA--------KARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           E+  G ++    L+  ++          K        VLF GPPG GKT LA+ +A E  
Sbjct: 467 EDVGGLLDVKRELQELVQYPVEYPWKFEKYGMSPPKGVLFYGPPGCGKTLLAKAIATECQ 526

Query: 80  VNFRSTSGPVIAKA--GDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPAMED 131
            NF S  GP +     G+  A + ++ D+       VLF DE+  ++           + 
Sbjct: 527 ANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCVLFFDELDSVAKSR----GAHGDG 582

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
              D ++ +  +            +I AT R  +L   +    R    I +   +     
Sbjct: 583 GASDRVINQILTEMDGMNVKKNVFIIGATNRPDVLDPAIMRPGRLDQLIYIPLPDKASRV 642

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA--EVAHAKTITREIAD 247
            I++   + + LA   +     A     +      + +R    A  E  + +    E+  
Sbjct: 643 AIIKASFRKSPLASDVDVDQIAAATHGFSGADLSGICQRACKMAIRESINKEIQLEELKK 702

Query: 248 AALLRLAID 256
              L    D
Sbjct: 703 IGQLDENAD 711


>gi|313679507|ref|YP_004057246.1| ATP-dependent proteinase [Oceanithermus profundus DSM 14977]
 gi|313152222|gb|ADR36073.1| ATP-dependent proteinase [Oceanithermus profundus DSM 14977]
          Length = 808

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 45/193 (23%), Positives = 72/193 (37%), Gaps = 35/193 (18%)

Query: 55  DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA----------------A 98
             +LFVGPPG+GKT++A+ +AR LG  +   S   +    D+                  
Sbjct: 357 PILLFVGPPGVGKTSIAKSIARALGRKYVRVSLGGVRDESDIRGHRRTYIGAMPGRIIQG 416

Query: 99  LLTNLEDRDVLFIDEIHRLSIIVE--------EILYPAMEDFQLDLMVGEGPSARSVKIN 150
           L        V  +DE+ ++    +        E+L PA      D  +G       V  +
Sbjct: 417 LRQAGSKNPVFLLDEVDKMGQSFQGDPAAALLEVLDPAQNKEFTDHYLG-------VPFD 469

Query: 151 LSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT----IVQRGAKLTGLAVTDE 206
           LS    I       L+  PL DR  +    ++ E E L+     ++ R  +  GL+    
Sbjct: 470 LSEVLFIGTANFPQLIPAPLMDRMELIEFTSYIEQEKLEIARRFLLPRQLEENGLSKGQV 529

Query: 207 AACEIAMRSRGTP 219
              E A+    T 
Sbjct: 530 HITEAALMRLITH 542


>gi|253997067|ref|YP_003049131.1| ATP-dependent metalloprotease FtsH [Methylotenera mobilis JLW8]
 gi|253983746|gb|ACT48604.1| ATP-dependent metalloprotease FtsH [Methylotenera mobilis JLW8]
          Length = 632

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 53/250 (21%), Positives = 91/250 (36%), Gaps = 23/250 (9%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAA-------KARAEALDHVLFVGPPGLGKTTLAQVVARE 77
            T  +  G  EA   +   +E         K        VL VGPPG GKT LA+ +A E
Sbjct: 152 TTFADVAGCDEAKEEVSELVEFLRDPSKFQKLGGRIPRGVLMVGPPGTGKTLLARAIAGE 211

Query: 78  LGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
             V F + SG       V   A  +  +  N +     ++FIDEI  +            
Sbjct: 212 AKVPFFTISGSDFVEMFVGVGASRVRDMFENAKKNSPCIIFIDEIDAVGRSRGAGTGGGN 271

Query: 130 EDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           ++ +  L  M+ E     +     S   +IAAT R  +L   L    RF   + +   +I
Sbjct: 272 DEREQTLNQMLVEMDGFEAN----SGVIVIAATNRADVLDKALLRPGRFDRQVMVGLPDI 327

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           +  + I+    +   +    +A          +      L+     FA   + +T+  + 
Sbjct: 328 KGREQILLVHMRKVPIDPDVKADILARGTPGFSGADLANLVNESALFAARRNKRTVDMQD 387

Query: 246 ADAALLRLAI 255
            + A  ++ +
Sbjct: 388 FEDAKDKIFM 397


>gi|213965130|ref|ZP_03393328.1| Cell division protease FtsH homolog [Corynebacterium amycolatum
           SK46]
 gi|213952244|gb|EEB63628.1| Cell division protease FtsH homolog [Corynebacterium amycolatum
           SK46]
          Length = 894

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 55/244 (22%), Positives = 91/244 (37%), Gaps = 19/244 (7%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAK--ARAEALD-----HVLFVGPPGLGKTTLAQVVAREL 78
           T E+  G  EA   L    +  +  AR E L       VL  GPPG GKT LA+ VA E 
Sbjct: 166 TFEDVAGADEAVQELDEIRDFLQHPARYEELGAKIPRGVLLYGPPGTGKTLLARAVAGEA 225

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F + SG       V   A  +  L    ++    ++FIDEI  +       +    +
Sbjct: 226 GVPFYTISGSDFVEMFVGVGASRVRDLFNQAKENSPCIIFIDEIDAVGRQRGAGMGGGHD 285

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
           + +  L   +         +     ++AAT R  +L   L    RF   I +   +++  
Sbjct: 286 EREQTL--NQLLVEMDGFGDRQGVIIMAATNRPDILDPALLRPGRFDRQIPVGAPDLKGR 343

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           + I++  A+   L    +        +  +      +L          +   IT +  + 
Sbjct: 344 EAILKVHARNKPLGPDADLTSLAKRTAGMSGADLQNVLNEAALLTARVNGNIITADALEE 403

Query: 249 ALLR 252
           A+ R
Sbjct: 404 AVDR 407


>gi|78188369|ref|YP_378707.1| peptidase M41, FtsH [Chlorobium chlorochromatii CaD3]
 gi|78170568|gb|ABB27664.1| Peptidase M41, FtsH [Chlorobium chlorochromatii CaD3]
          Length = 662

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 60/253 (23%), Positives = 92/253 (36%), Gaps = 31/253 (12%)

Query: 26  TLEEFTGQVEACSNLKVFIEAA-------KARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  EA   LK  +E         K   +    VL +GPPG GKT LA+ +A E 
Sbjct: 207 TFKDVAGVDEAIEELKETVEFLVNPEKFQKIGGKIPKGVLLLGPPGTGKTLLAKAIAGEA 266

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  L    +     ++FIDEI  +       L    +
Sbjct: 267 KVPFFSMSGADFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRSRGAGLGGGHD 326

Query: 131 DFQLDL------MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNF 182
           + +  L      M G G +   + I        AAT R  +L + L    RF   I ++ 
Sbjct: 327 EREQTLNQLLVEMDGFGTTDNVILI--------AATNRPDVLDSALLRPGRFDRQITIDK 378

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
            +I   + I+    + T L  +             +      L+      A    A+ IT
Sbjct: 379 PDIRGREAILAIHTQKTPLDESVTLTVLAKSTPGFSGADLANLVNEAALLAARQEAERIT 438

Query: 243 REIADAALLRLAI 255
               + A  R+ +
Sbjct: 439 ATHFEQARDRILM 451


>gi|78043977|ref|YP_359086.1| cell division protein FtsH [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77996092|gb|ABB14991.1| cell division protein FtsH [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 619

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 59/246 (23%), Positives = 87/246 (35%), Gaps = 23/246 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  E    L   +E  K         A     VL  G PG GKT LA+ +A E 
Sbjct: 156 TFADVAGIDEVKEELAEIVEFLKNPRKYNELGARIPKGVLLFGQPGTGKTLLARAIAGEA 215

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG       V   A  +  L    +     ++FIDEI  +       L    +
Sbjct: 216 GVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIVFIDEIDAVGRQRGAGLGGGHD 275

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E     S +       +IAAT R  +L   L    RF   I ++  +I 
Sbjct: 276 EREQTLNQLLVEMDGFNSNEG----IIIIAATNRPDILDPALLRPGRFDRHIVVDTPDIN 331

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             K I++   K   L    +           T      ++      A   + K I  E  
Sbjct: 332 GRKEILKVHVKGKPLGDDVDLDVLARRTPGFTGADLANMVNEAALLAARRNKKVINMEEM 391

Query: 247 DAALLR 252
           + A+ R
Sbjct: 392 EEAIER 397


>gi|262277306|ref|ZP_06055099.1| ATPase, AAA family [alpha proteobacterium HIMB114]
 gi|262224409|gb|EEY74868.1| ATPase, AAA family [alpha proteobacterium HIMB114]
          Length = 294

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/179 (21%), Positives = 66/179 (36%), Gaps = 27/179 (15%)

Query: 36  ACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP 88
             SNL  FI       E + A   A   +L    PG GKTT A+++A  LG++F+     
Sbjct: 5   IKSNLNQFIIGNDDKIELSMAAIIAGGSILLEDQPGTGKTTFAKLIANSLGLDFKRIQFT 64

Query: 89  VIAKAGDLAALLT------NLEDRDVL----FIDEIHRLSIIVEEILYPAMEDFQLDLMV 138
                 D+   +       N +   +       DE++R +   +     AME+  + +  
Sbjct: 65  SDMLPSDINGFVKYINNEPNFQKGPIFSNIILADELNRGNPKCQSAFMEAMEEKSVTI-- 122

Query: 139 GEGPSARSVKINLSRFTLIAATTRVGLLTNPL----QDRFGIPIRLNFYEIEDLKTIVQ 193
                  +  +    F +        + T PL     DRF I   +N    +  K I++
Sbjct: 123 ----DGSTHNLPQPFFVIATQNPTEQVGTYPLPESQLDRFMISFSMNKLNHDQEKEILK 177


>gi|255947742|ref|XP_002564638.1| Pc22g06060 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211591655|emb|CAP97894.1| Pc22g06060 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 798

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 54/231 (23%), Positives = 86/231 (37%), Gaps = 26/231 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G  EA   L+  +E        +    +    VL VGPPG GKT LA+ VA E 
Sbjct: 330 RFSDVHGCDEAKDELQELVEFLLNPDRFSSLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 389

Query: 79  GVNFRSTSGPVIA------KAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAME 130
           GV F   SG           A  +  L      +   ++FIDE+  +     E    A  
Sbjct: 390 GVPFFYMSGSEFDEVYVGVGAKRVRDLFAQARGKAPAIIFIDELDAIGGKRNER-DAAYV 448

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
              L+ ++ E               +IAAT    LL   L    RF   + ++  ++   
Sbjct: 449 KQTLNQLLTELDGFSQTTG----VIIIAATNYPQLLDKALTRPGRFDRRVVVDLPDVRGR 504

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
             I++   K            ++ + +RGTP  +G  L  + + A V  ++
Sbjct: 505 MDILRHHMKEIQFGPD----VDVGVIARGTPGFSGADLENLVNQAAVHASR 551


>gi|196248596|ref|ZP_03147297.1| stage V sporulation protein K [Geobacillus sp. G11MC16]
 gi|196212321|gb|EDY07079.1| stage V sporulation protein K [Geobacillus sp. G11MC16]
          Length = 310

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 58/281 (20%), Positives = 99/281 (35%), Gaps = 54/281 (19%)

Query: 25  RTLEEFTGQVEACSNLKVFI----------EAAKARAEALDHVLFVGPPGLGKTTLAQVV 74
           + L++  G       +K             E          H++F G PG GKTT+A+++
Sbjct: 47  KELDQLIGLDHVKKIVKEIYAWLYISRRRKENGLKANRQALHMIFKGNPGTGKTTVARLL 106

Query: 75  AR--------ELGVNFRSTSGPVIAK-----AGDLAALLTNLEDRDVLFIDEIHRLSIIV 121
            +          G    +    ++ +     A     L+       VLFIDE + L+   
Sbjct: 107 GKLFFEMNVLSKGHFIEAERADLVGEYIGHTANKTRDLIKKARGG-VLFIDEAYSLARGG 165

Query: 122 E--------EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR 173
           E        + L   MED+  DL+V      R +   LS             L   L  R
Sbjct: 166 EKDFGKEAIDTLVKGMEDYCDDLVVILAGYPREMDYFLS-------------LNPGLPSR 212

Query: 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
           F + I    Y +E+L  I ++  +     +T EA  ++ +   GT   AGR+        
Sbjct: 213 FPLTIEFPDYTVEELVQIAKQMLREREYEMTPEAERKLYVHLEGTLEAAGRM-------- 264

Query: 234 EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARN 274
                    R + + A+ + A+  +   + D + L  I   
Sbjct: 265 -KFSNGRYVRNLIEKAIRKQAVRLLHEGRYDKKELMTIRDR 304


>gi|194246442|ref|YP_002004081.1| similar to ATP-dependent Zn protease [Candidatus Phytoplasma mali]
 gi|193806799|emb|CAP18226.1| similar to ATP-dependent Zn protease [Candidatus Phytoplasma mali]
          Length = 467

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 79/211 (37%), Gaps = 14/211 (6%)

Query: 33  QVEACSNLKVFIEAAKARAEALD-HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA 91
           Q+    N + F+ A K +   L   V+F GPPG GKT LA+  A+E  ++F + +     
Sbjct: 133 QLRKADNQEFFLRATKHKTNKLPKGVVFYGPPGTGKTYLAKCFAKEAQMSFYTITTSDSL 192

Query: 92  KAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKI 149
           +  +   +          ++F DE   L            +  + +L + E    ++   
Sbjct: 193 EKIE--QIFKKARKNSPSIIFCDEAEELMKSRVSTNLETGDAKKTNLFLQELDGVKTD-- 248

Query: 150 NLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAAC 209
                  IAAT  +  + + +  R    +   + + ++    ++   K       D AA 
Sbjct: 249 PEYPIYFIAATNYIDRIDSAILSRLE-KLYFGYLKEDERLGFLKNSMKKYEC---DPAAY 304

Query: 210 EIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240
           E          +  + LR+   F+++   + 
Sbjct: 305 E---YLTQIVEMFNKSLRQPEHFSDLIKNQH 332


>gi|148703170|gb|EDL35117.1| spermatogenesis associated 5, isoform CRA_c [Mus musculus]
          Length = 892

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 84/243 (34%), Gaps = 34/243 (13%)

Query: 29  EFTGQVEACSNLKVFIEAAK---ARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
           +  G     S LK   E  +    + E            +L  GPPG GKT +A+ VA E
Sbjct: 352 DMIG--GLNSQLKAIREIIELPLKQPELFKSYGIPAPRGLLLYGPPGTGKTMIARAVANE 409

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIV---EEILY 126
           +G      +GP I           L  +      R   ++FIDE+  L       +  + 
Sbjct: 410 VGAYVSVINGPEIISKFYGETEARLRQIFAEATLRHPSIIFIDELDALCPKREGAQSEVE 469

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
             +    L LM G G           R  ++ AT R   L   L+   RF   I +    
Sbjct: 470 KRVVASLLTLMDGIGSEGSEG-----RVLVLGATNRPQALDAALRRPGRFDKEIEIGIPN 524

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
            +D   I+Q   KL           E+   +       G  L+ + + A +   + + R+
Sbjct: 525 AQDRLDILQ---KLLRRVPHLLTKAELLRLANNAHGYVGADLKALCNEAGLHALRRVLRK 581

Query: 245 IAD 247
             +
Sbjct: 582 QPN 584



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 66/186 (35%), Gaps = 21/186 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
           +  +  G       LK  +E      +            VL  GPPG  KT +A+ +A E
Sbjct: 624 SWSDIGGLENIKLKLKQAVEWPLKHPKSFNRMGIQPPKGVLLYGPPGCSKTMIAKALANE 683

Query: 78  LGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAM 129
            G+NF +  GP +     G+    +  +  +       ++F DE+  L++          
Sbjct: 684 SGLNFLAIKGPELMNKYVGESERAVREIFRKARAVAPSIIFFDELDALAVERGSSSGAGN 743

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                D ++ +  +       L   T++AAT R   +   L    R    I +   +   
Sbjct: 744 ---VADRVLAQLLTEMDGIEQLKNVTVLAATNRPDRIDKALMRPGRIDRIIYVPLPDAAT 800

Query: 188 LKTIVQ 193
            + I+ 
Sbjct: 801 RREILN 806


>gi|11465793|ref|NP_053937.1| cell division protein [Porphyra purpurea]
 gi|1706926|sp|P51327|FTSH_PORPU RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|1276793|gb|AAC08213.1| hypothetical chloroplast ORF 25 [Porphyra purpurea]
          Length = 628

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 57/273 (20%), Positives = 94/273 (34%), Gaps = 23/273 (8%)

Query: 27  LEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVARELG 79
             +  G  EA    +  +   K         A+    VL VGPPG GKT LA+ +A E G
Sbjct: 172 FNDVAGVEEAKEEFQEVVTFLKQPESFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG 231

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMED 131
           V F S SG           A  +  L    +D    ++FIDEI  +       +    ++
Sbjct: 232 VPFFSISGSEFVEMFVGVGASRVRDLFKKAKDNAPCIVFIDEIDAVGRQRGTGVGGGNDE 291

Query: 132 FQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            +  L  ++ E               +IAAT R  +L + L    RF   + ++  +   
Sbjct: 292 REQTLNQLLTEMDGFEGNTG----VIVIAATNRADILDSALLRPGRFDRQVSVDVPDFRG 347

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
              I++  AK   +                +      LL              +T    D
Sbjct: 348 RLAILEVHAKNKKMESKVSLETIARRTPGFSGADLANLLNEAAILTARRRKSAMTMSEID 407

Query: 248 AALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV 280
            ++ R+     G   +D +   +IA +  G  +
Sbjct: 408 TSIDRVVAGLEGTPLIDSKSKRLIAYHEVGHAI 440


>gi|328953179|ref|YP_004370513.1| ATP-dependent metalloprotease FtsH [Desulfobacca acetoxidans DSM
           11109]
 gi|328453503|gb|AEB09332.1| ATP-dependent metalloprotease FtsH [Desulfobacca acetoxidans DSM
           11109]
          Length = 624

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 54/249 (21%), Positives = 90/249 (36%), Gaps = 23/249 (9%)

Query: 26  TLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T  +  G  E    +   I          +        VL VGPPG GKT LA+ +A E 
Sbjct: 158 TFSDVAGIDEVKEEVSEIIDFLKDPKRFTRLGGRIPKGVLLVGPPGTGKTLLARAIAGEA 217

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG       V   A  +  L    +     ++FIDEI  +       L    +
Sbjct: 218 GVPFFSISGSDFVEMFVGVGAARVRDLFLQGKKNAPCIIFIDEIDAVGRHRGAGLGGGHD 277

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E     S +       LIAAT R  +L   L    RF   + +   +++
Sbjct: 278 EREQTLNQLLVEMDGFESNEG----VILIAATNRPDVLDPALLRPGRFDRQVVVPIPDLK 333

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             ++I++   +   LA               +      L+     FA   +   ++ E  
Sbjct: 334 GRESILKVHTRKIPLADIVNLFVLARGTPGFSGADLENLVNEAAIFAARDNKDRVSMEDF 393

Query: 247 DAALLRLAI 255
           + A  ++ +
Sbjct: 394 EQAKDKILM 402


>gi|315425404|dbj|BAJ47069.1| replication factor C large subunit [Candidatus Caldiarchaeum
           subterraneum]
          Length = 409

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 71/220 (32%), Gaps = 24/220 (10%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82
           RPR + E  G  EA      ++   +    +    L  GP G+GKT+L    A E G   
Sbjct: 10  RPRKVSEIVGNKEAVQAFLEWMAGWEKGKPSKKAALLYGPAGVGKTSLVHAYASEKGYEV 69

Query: 83  RSTSGPVIAKAGDLAALLTN--------LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134
             T+        ++  ++          +  R ++ +DE+  +    +     ++ D   
Sbjct: 70  IETNASDFRTRENIERIVGAASGMASLTMGQRKIILVDEVDGIDARADAGAVTSLAD--- 126

Query: 135 DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194
              +        V         + A         PL+D   +       +   +   +++
Sbjct: 127 ---IISKTHVPVV---------LVANDPWDPRLAPLRDACLMIQFRRIPKP-SVAAHLKK 173

Query: 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
            A    + V ++    I   S G  R A   L+      E
Sbjct: 174 IAAAENVRVPEDVLRRIVENSEGDLRSAINDLQMASAALE 213


>gi|289449797|ref|YP_003475214.1| ATP-dependent metallopeptidase HflB [Clostridiales genomosp. BVAB3
           str. UPII9-5]
 gi|289184344|gb|ADC90769.1| ATP-dependent metallopeptidase HflB [Clostridiales genomosp. BVAB3
           str. UPII9-5]
          Length = 673

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 66/296 (22%), Positives = 111/296 (37%), Gaps = 34/296 (11%)

Query: 26  TLEEFTGQVEACSNLKV---FIEAAKARAE----ALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  E    L+    F++  K  +E        +L VGPPG GKT LA+ VA E 
Sbjct: 166 TFDDVAGVEEEKHELQEVVDFLKNPKKYSELGARIPRGILLVGPPGTGKTLLAKAVAGEA 225

Query: 79  GVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           GV F S SG            ++  DL A +       ++FIDEI  +       +    
Sbjct: 226 GVPFFSISGSDFVEMFVGVGASRVRDLFAEVKKHSP-AIIFIDEIDAVGRHRGAGMGGGH 284

Query: 130 EDFQLDL------MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLN 181
           ++ +  L      M G GP+  ++        ++AAT R  +L   L    RF   + + 
Sbjct: 285 DEREQTLNQLLVEMDGFGPNEDAI--------IMAATNRPDILDPALLRPGRFDRQVTVM 336

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
             ++   + I++  +K   L  + +      +    T      LL          +AK I
Sbjct: 337 RPDLLGREAILKVHSKSKPLDPSIDLKEVARITPGFTGADLANLLNEAALLCARRNAKII 396

Query: 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNF-GGGPVGIETISAGLSEPRDAI 296
           T      A+ ++ I       L   +   +      G  + + T+S      R +I
Sbjct: 397 TYNDISEAVFKVMIGPEKKSHLMNDHDKTLTSYHEAGHAIILRTVSTTDRVERVSI 452


>gi|255540583|ref|XP_002511356.1| Transitional endoplasmic reticulum ATPase, putative [Ricinus
           communis]
 gi|223550471|gb|EEF51958.1| Transitional endoplasmic reticulum ATPase, putative [Ricinus
           communis]
          Length = 804

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 75/216 (34%), Gaps = 17/216 (7%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +          ++  +          V
Sbjct: 513 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCV 572

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           LF DE+  ++      +  A      D ++ +  +            +I AT R  ++  
Sbjct: 573 LFFDELDSIATQRGSSVGDA--GGAADRVLNQLLTEMDGMTAKKTVFIIGATNRPDIIDP 630

Query: 169 PLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
            L    R    I +   +      I +   + + ++   E A         +      + 
Sbjct: 631 ALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPVSRDVELAALARYTHGFSGADITEIC 690

Query: 227 RRVRDFAEVAH-----AKTITREIADAALLRLAIDK 257
           +R   +A   +      +   ++    A+    +D+
Sbjct: 691 QRACKYAIRENIEKDIEREKRKQENPEAMEEDDVDE 726



 Score = 52.4 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/167 (23%), Positives = 63/167 (37%), Gaps = 28/167 (16%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHV--------LFVGPPGLGKTTLAQVVARELG 79
           ++  G  +  + ++  +E      +    +        L  GPPG GKT +A+ VA E G
Sbjct: 213 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG 272

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPA--- 128
             F   +GP I          +L       E     ++FIDEI  ++   E+        
Sbjct: 273 AFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERR 332

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
           +    L LM G    A  +        ++ AT R   +   L+ RFG
Sbjct: 333 IVSQLLTLMDGLKSRAHVI--------VMGATNRPNSIDPALR-RFG 370


>gi|157818795|ref|NP_001102019.1| spermatogenesis-associated protein 5 [Rattus norvegicus]
 gi|149048771|gb|EDM01312.1| spermatogenesis associated 5 (predicted), isoform CRA_a [Rattus
           norvegicus]
          Length = 838

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 54/229 (23%), Positives = 80/229 (34%), Gaps = 34/229 (14%)

Query: 29  EFTGQVEACSNLKVFIEAAK---ARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
           +  G     S LK   E  +    + E            +L  GPPG GKT +A+ VA E
Sbjct: 353 DMIG--GLNSQLKAIREIIELPLKQPELFKSYGIPAPRGLLLYGPPGTGKTMIARAVANE 410

Query: 78  LGVNFRSTSGPVIAKA--GDLAALLTN------LEDRDVLFIDEIHRLSIIV---EEILY 126
           +G      +GP I     G+  A L        L    ++FIDE+  L       +  + 
Sbjct: 411 VGAYVSVINGPEIISKFYGETEARLRQIFAEATLRHPSIIFIDELDALCPKREGAQSEVE 470

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
             +    L LM G G           R  ++ AT R   L   L+   RF   I +    
Sbjct: 471 KRVVASLLTLMDGIGSEGSEG-----RVLVLGATNRPQALDAALRRPGRFDKEIEIGIPN 525

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
            +D   I+Q   KL           E+   +       G  L+ + + A
Sbjct: 526 AQDRLDILQ---KLLRRVPHLLTKAELLRLANNAHGYVGADLKALCNEA 571



 Score = 50.5 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 60/157 (38%), Gaps = 19/157 (12%)

Query: 26  TLEEFTGQVEACSNLKVFIE--------AAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
           +  +  G       LK  +E         ++   +    VL  GPPG  KT +A+ +A E
Sbjct: 625 SWSDIGGLENIKLKLKQAVEWPLKHPKSFSRMGIQPPKGVLLYGPPGCSKTMIAKALANE 684

Query: 78  LGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAM 129
            G+NF +  GP +     G+    +  +  +       ++F DE+  L++          
Sbjct: 685 SGLNFLAIKGPELMNKYVGESERAVREVFRKARAVAPSIIFFDELDALAVERGSSSGAGN 744

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL 166
                D ++ +  +       L   T++AAT R   +
Sbjct: 745 ---VADRVLAQLLTEMDGIEQLKNVTVLAATNRPDRI 778


>gi|123966164|ref|YP_001011245.1| cell division protein FtsH4 [Prochlorococcus marinus str. MIT 9515]
 gi|123200530|gb|ABM72138.1| cell division protein FtsH4 [Prochlorococcus marinus str. MIT 9515]
          Length = 584

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 57/271 (21%), Positives = 100/271 (36%), Gaps = 33/271 (12%)

Query: 25  RTLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
              ++  G  EA   LK  I             A+    VL +GPPG GKT LA+ +A E
Sbjct: 132 TRFDDVAGVPEAAEELKEVIKFLNEPKRFTDLGAKVPKGVLLIGPPGTGKTLLAKAIAGE 191

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
            GV F S +            A  +  L    +++   ++FIDEI  +       +    
Sbjct: 192 SGVPFLSIAASEFVELFVGVGASRVRDLFVKAKEKSPCIIFIDEIDSIGRQRGSGIGGGN 251

Query: 130 EDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           ++ +  L  ++ E           S   +IAAT R  +L + L    RF   I +   ++
Sbjct: 252 DEREQTLNQLLTELDGFSDN----SGIIVIAATNRPDILDSALLRPGRFDRKIEVMLPDL 307

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           +  K I+     +  L+       ++   +  T   +G       D A + +   I    
Sbjct: 308 DGRKKILS----VHSLSKPLSKNVDLGYWATRTVGFSG------ADLANLMNESAIHCAR 357

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIARNFG 276
            ++ L+     +   D++ L   T I  +  
Sbjct: 358 EESKLICDIHIENALDKVTLGLRTSIISSHN 388


>gi|60735079|dbj|BAD91025.1| valosin containing protein-2 [Eisenia fetida]
 gi|147225258|dbj|BAF62456.1| valosine containing peptide-2 [Eisenia fetida]
          Length = 763

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/165 (23%), Positives = 65/165 (39%), Gaps = 20/165 (12%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLED 105
           +    VL  GPPG GKT +A+ VA E GV F   +GP I          +L  +    E 
Sbjct: 230 KPPKGVLMYGPPGTGKTLIARAVANETGVYFIVINGPDIMSKWFGDSEANLRKIFETAEA 289

Query: 106 R--DVLFIDEIHRLSIIVEEI--LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATT 161
               ++FIDE+  ++   ++       +    L LM G            S+  ++AAT 
Sbjct: 290 NSPSIIFIDEMDAIAPKRDKCSSADRHIVSQLLTLMDG--------MKQTSQVVVMAATN 341

Query: 162 RVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVT 204
           R   +   L+   RF   + +   +      I++   +   L+  
Sbjct: 342 RPNSIDEALRRCGRFDREVDIGVPDTNGRLAILRIHTRNMRLSSD 386



 Score = 46.2 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 46/257 (17%), Positives = 86/257 (33%), Gaps = 33/257 (12%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVARE 77
           T ++  G       L   ++      +            VLF GPPG GKT LA+ +A +
Sbjct: 468 TWDDIGGLEGVKKELLEIVQYPVEHPDLFTKYGLPPSKGVLFYGPPGCGKTLLAKAIATQ 527

Query: 78  LGVNFRSTSGPVI---------AKAGDLAALLTNLED-RDVLFIDEIHRLSIIVEEILYP 127
              NF S  GP +         +   D+ A   +    R +L  +          ++  P
Sbjct: 528 CQANFISIKGPELLSMWFGESESNVRDIFAKARSACPLRTLLRRNWTPFQMKRGNKLTCP 587

Query: 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           A +     L+      + S         +I AT R  ++ + +    R    + +   ++
Sbjct: 588 AADRVINQLLTEMDGVSPS-----KNVFVIGATNRPDVIDSAILRPGRLDQMVYIPLPDV 642

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           +    I +   + + +        E+   +  T   +G  ++ +   A     K   RE 
Sbjct: 643 KSRLMIFRATLRKSPVDKD----VELGRMAIDTEGFSGADIKEICQRA----CKAAIREC 694

Query: 246 ADAALLRLAIDKMGFDQ 262
               L R  +D    D 
Sbjct: 695 IQCELDRKNLDPEDGDS 711


>gi|87198102|ref|YP_495359.1| membrane protease FtsH catalytic subunit [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87133783|gb|ABD24525.1| membrane protease FtsH catalytic subunit [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 644

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 92/249 (36%), Gaps = 23/249 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  EA   L+  +E        +K   +     L VG PG GKT LA+ +A E 
Sbjct: 161 TFDDVAGIDEAREELQEIVEFLRDPSRFSKLGGQIPKGALLVGSPGTGKTLLARAIAGEA 220

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F + SG       V   A  +  +    +     ++FIDEI  +       L  + +
Sbjct: 221 GVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKNAPCIVFIDEIDAVGRHRGHGLGNSND 280

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E     + +       +IAAT R  +L   L    RF   + +   +IE
Sbjct: 281 EREQTLNQLLVEMDGFEANEG----IIIIAATNRPDVLDPALLRPGRFDRQVVVPIPDIE 336

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I+    K   LA               +      L+      A   + + +  +  
Sbjct: 337 GREKILSVHMKKVPLAPDVNPRTIARGTPGFSGADLANLVNEAALLAARRNKRLVAMQEF 396

Query: 247 DAALLRLAI 255
           + A  ++ +
Sbjct: 397 EDAKDKVMM 405


>gi|84501656|ref|ZP_00999828.1| ATP-dependent metalloprotease FtsH [Oceanicola batsensis HTCC2597]
 gi|84390277|gb|EAQ02836.1| ATP-dependent metalloprotease FtsH [Oceanicola batsensis HTCC2597]
          Length = 639

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 56/237 (23%), Positives = 97/237 (40%), Gaps = 27/237 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  EA   L+  +E        ++   +     L VGPPG GKT LA+ +A E 
Sbjct: 152 TFDDVAGIDEAKEELEEIVEFLRNPQKFSRLGGKIPKGALLVGPPGTGKTLLARAIAGEA 211

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F + SG       V   A  +  +    +     ++FIDEI  +            +
Sbjct: 212 GVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKNAPCIVFIDEIDAVGRHRGAGYGGGND 271

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E     S +       ++AAT R  +L   L    RF   + +   +I+
Sbjct: 272 EREQTLNQLLVEMDGFESNEG----VIILAATNRRDVLDPALLRPGRFDRQVTVPNPDIK 327

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
             + I+   A+ T L        ++ + +RGTP  +G  L  + + A +  A+   R
Sbjct: 328 GREKILGVHARKTPLGPD----VDLRIIARGTPGFSGADLANLVNEAALMAARVGRR 380


>gi|297243774|ref|ZP_06927704.1| ATP-dependent zinc metallopeptidase involved in cell division
           [Gardnerella vaginalis AMD]
 gi|296888195|gb|EFH26937.1| ATP-dependent zinc metallopeptidase involved in cell division
           [Gardnerella vaginalis AMD]
          Length = 769

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 47/208 (22%), Positives = 78/208 (37%), Gaps = 12/208 (5%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DV 108
           VL  GPPG GKT LA+ +A E GV F + +G       V   A  +  L    +     +
Sbjct: 263 VLLYGPPGTGKTLLARAIAGEAGVPFYAMAGSDFVEMFVGLGASRVRELFDEAKKNAPAI 322

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +FIDEI  +       +    ++ +  L   +         N +   +IAAT R  +L +
Sbjct: 323 IFIDEIDAVGRRRGSGMTGGHDEREQTL--NQLLVEMDGFDNDTNLIIIAATNRPDVLDS 380

Query: 169 PLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
            L    RF   + +   ++E  + I++  AK        +           T      +L
Sbjct: 381 ALLRPGRFDRQVAVEAPDLEGREAILKVHAKGKPFVPDVDLHMVAVRTPGFTGADLANVL 440

Query: 227 RRVRDFAEVAHAKTITREIADAALLRLA 254
                    + A+ I     D A+ R+ 
Sbjct: 441 NEAALLCARSGAQYIDNRAIDEAIDRVQ 468


>gi|224127332|ref|XP_002329251.1| predicted protein [Populus trichocarpa]
 gi|222870705|gb|EEF07836.1| predicted protein [Populus trichocarpa]
          Length = 776

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/133 (28%), Positives = 55/133 (41%), Gaps = 16/133 (12%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLED 105
           +    +L  GPPG GKT +A+ +A E G  F   +GP I          +L       E 
Sbjct: 220 KPPRGILLYGPPGTGKTLIARAIANETGAFFFCINGPEIMSKMAGESEQNLRKAFEEAEK 279

Query: 106 R--DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV-GEGPSARSVKINLSRFTLIAATTR 162
               ++FIDEI  ++   E+            L+   +G  AR+  I      +I AT R
Sbjct: 280 NAPAIVFIDEIDSIAPKREKTGGEVERRIVSQLLTLMDGLKARAHVI------VIGATNR 333

Query: 163 VGLLTNPLQDRFG 175
              L   L+ RFG
Sbjct: 334 PNSLDPALR-RFG 345



 Score = 47.8 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 53/282 (18%), Positives = 92/282 (32%), Gaps = 35/282 (12%)

Query: 2   MDREGLLSRNVSQEDADISL-------LR------PR-TLEEFTGQVEACSNLKVFIEAA 47
           +D E L S  V+ E   I+L       LR      P    E+  G  +    L+  ++  
Sbjct: 421 IDAEVLNSMAVTNEHFSIALGTSNPSALRETIVEVPNVRWEDIGGLEKVKMELQETVQYP 480

Query: 48  KARAEAL--------DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKA 93
               E            VLF GPPG GKT LA+ +A E   NF S  GP +         
Sbjct: 481 VEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESE 540

Query: 94  GDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINL 151
            ++  +          V+F DE+  ++I     +  A      D ++ +  +        
Sbjct: 541 ANVRDVFDKARQSAPCVIFFDELDSIAIQRGNSVGDA--GGAADRVLNQLLTEMDGLSAK 598

Query: 152 SRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAAC 209
               +I AT R  ++   L    R    I +   +      I +   + + ++   +   
Sbjct: 599 KTVFIIGATNRPDIIDPALMRPGRLDQLIYIPLPDEGSRLQIFKACLRKSPVSKDVDLQV 658

Query: 210 EIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251
                   +      + +R   +A V        +     L 
Sbjct: 659 LAKHTEGFSGADITEICQRACKYA-VREDIEKDIKRKIEGLE 699


>gi|254475383|ref|ZP_05088769.1| ATP-dependent metallopeptidase HflB subfamily [Ruegeria sp. R11]
 gi|214029626|gb|EEB70461.1| ATP-dependent metallopeptidase HflB subfamily [Ruegeria sp. R11]
          Length = 639

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 54/251 (21%), Positives = 92/251 (36%), Gaps = 27/251 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  EA   L+  +E        ++   +     L VGPPG GKT LA+ +A E 
Sbjct: 152 TFDDVAGIDEAKEELEEIVEFLRNPQKFSRLGGKIPKGALLVGPPGTGKTLLARAIAGEA 211

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F + SG       V   A  +  +    +     ++FIDEI  +            +
Sbjct: 212 GVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKNAPCIVFIDEIDAVGRHRGAGYGGGND 271

Query: 131 DFQLD----LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
           + +      L+  +G  A    I L      AAT R  +L   L    RF   + +   +
Sbjct: 272 EREQTLNQLLVEMDGFEANEGVIIL------AATNRRDVLDPALLRPGRFDRNVTVGNPD 325

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           I+  + I+   A+ T L    +           +      L+      A     + +T E
Sbjct: 326 IKGREKILGVHARKTPLGPDVDLRIIARGTPGFSGADLANLVNEAALMAARVGRRFVTME 385

Query: 245 IADAALLRLAI 255
             + A  ++ +
Sbjct: 386 DFENAKDKVMM 396


>gi|149246888|ref|XP_001527869.1| cell division control protein 48 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146447823|gb|EDK42211.1| cell division control protein 48 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 839

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 71/195 (36%), Gaps = 23/195 (11%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHV--------LFVGPPGLGKTTLAQVVARELG 79
           ++  G  +  + ++  +E      +    +        L  GPPG GKT +A+ VA E G
Sbjct: 215 DDIGGCKKQMAQIRELVELPLRHPQLFKSIGIKPPKGILMYGPPGTGKTIMARAVANETG 274

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAMED 131
             F   +GP I          +L       E     ++FIDEI  ++   ++        
Sbjct: 275 AFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPSIIFIDEIDSIAPKRDK-----TNG 329

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
                +V +  +        S   +IAAT R   +   L+   RF   + +   + E   
Sbjct: 330 EVERRVVSQLLTLMDGMKARSNVVVIAATNRPNSIDPALRRFGRFDREVDIGVPDAEGRL 389

Query: 190 TIVQRGAKLTGLAVT 204
            I++   K   LA  
Sbjct: 390 EILRIHTKNMKLADD 404



 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 43/195 (22%), Positives = 69/195 (35%), Gaps = 20/195 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
           T ++  G     + LK  +E      +            VLF GPPG GKT LA+ VA E
Sbjct: 486 TWDDIGGLDNIKNELKETVEYPVLHPDQYQKFGLAPTKGVLFFGPPGTGKTLLAKAVATE 545

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAM 129
           +  NF S  GP +          ++  +          V+F+DE+  ++         A 
Sbjct: 546 VSANFISVKGPELLSMWYGESESNIRDIFDKARAAAPTVVFLDELDSIAKARGGSNGDA- 604

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                D +V +  +            +I AT R   +   L    R    I +   +   
Sbjct: 605 -GGASDRVVNQLLTEMDGMNAKKNVFVIGATNRPDQIDPALLRPGRLDQLIYVPLPDEPA 663

Query: 188 LKTIVQRGAKLTGLA 202
             +I+Q   + T L 
Sbjct: 664 RLSILQAQLRNTPLE 678


>gi|114621562|ref|XP_001148340.1| PREDICTED: similar to ATAD2 protein isoform 1 [Pan troglodytes]
          Length = 940

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/186 (22%), Positives = 71/186 (38%), Gaps = 26/186 (13%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTS------GPVIAK-AGDLAALL 100
           K + +     LF GPPG GKT +A+ +A E     +  +         ++K  G+    L
Sbjct: 455 KFKIQPPRGCLFYGPPGTGKTLVARALANECSQGDKRVAFFMRKGADCLSKWVGESERQL 514

Query: 101 TNLEDR------DVLFIDEIHRLSII---VEEILYPAMEDFQLDLMVGEGPSARSVKINL 151
             L D+       ++F DEI  L+ +    ++ ++ ++    L LM G       V I  
Sbjct: 515 RLLFDQAYQMRPSIIFFDEIDGLAPVRSSRQDQIHSSIVSTLLALMDGLDSRGEIVVI-- 572

Query: 152 SRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAAC 209
                  AT R+  +   L+   RF      +  + E  K I++   +       D    
Sbjct: 573 ------GATNRLDSIDPALRRPGRFDREFLFSLPDKEARKEILKIHTRDWNPKPLDTFLE 626

Query: 210 EIAMRS 215
           E+A   
Sbjct: 627 ELAENC 632


>gi|87198597|ref|YP_495854.1| AAA family ATPase, CDC48 subfamily protein [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87134278|gb|ABD25020.1| AAA family ATPase, CDC48 subfamily [Novosphingobium aromaticivorans
           DSM 12444]
          Length = 772

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 54/264 (20%), Positives = 93/264 (35%), Gaps = 27/264 (10%)

Query: 28  EEFTGQVEACSNLKVFIEA--------AKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
           ++  G  +    L+  +E          +   +    VL  GPPG GKT LA+ VA E  
Sbjct: 210 DDVGGMGDTIRQLREMVELPLRYPELFTRLGVDPPKGVLLHGPPGTGKTRLARAVANESD 269

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYPAMED 131
            +F + +GP I           L  +          ++FIDEI  ++    E+   A + 
Sbjct: 270 ASFFTINGPEIMGSAYGESEKRLREVFEEATANSPSIIFIDEIDSIAPKRSEVHGEAEKR 329

Query: 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK 189
               L+            + S   +IAAT R   +   L+   RF   I +   +    +
Sbjct: 330 LVAQLLT-----LMDGLHSRSNLVVIAATNRPDAIDEALRRPGRFDREIVVGVPDESGRR 384

Query: 190 TIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249
            I+    +   LA  D    E+A  + G        L R      V        +     
Sbjct: 385 EILGIHTRGMPLA-EDVDLQELARTTHGFVGADLAALAREAAIEAVRRIMP-RLDFEQQT 442

Query: 250 LLRLAIDKMGFDQLDLRYLTMIAR 273
           + +  +D +  ++ D  +L  + R
Sbjct: 443 IPQDVLDSLRVERDD--FLEALKR 464


>gi|332827689|gb|EGK00428.1| ATP-dependent zinc metalloprotease FtsH [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 677

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 54/247 (21%), Positives = 90/247 (36%), Gaps = 24/247 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  EA   ++  +E  K          +     L VGPPG GKT LA+ VA E 
Sbjct: 197 TFKDVAGLSEAKEEIEEIVEFLKNPSRYTEIGGKIPKGALLVGPPGTGKTLLAKAVAGEA 256

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  L    +++   ++FIDEI  +       L     
Sbjct: 257 NVPFFSLSGSDFVEMFVGVGASRVRDLFKQAKEKSPCIIFIDEIDAIGRARGRNLNMGSN 316

Query: 131 D---FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           D     L+ ++ E     +     S   ++AAT R  +L   L    RF   I ++  ++
Sbjct: 317 DERENTLNQLLTEMDGFGTN----SGIIILAATNRADILDKALLRAGRFDRQITVDLPDV 372

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
            D K I +   +   +  + +           +      +       A     K + ++ 
Sbjct: 373 NDRKEIFKVHLRPVKIDDSVDVEFLARQTPGFSGADIANVCNEAALIAARKGKKVVQKDD 432

Query: 246 ADAALLR 252
              A+ R
Sbjct: 433 FTNAVDR 439


>gi|322511101|gb|ADX06414.1| putative replication factor C [Organic Lake phycodnavirus 2]
          Length = 286

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 52/165 (31%), Gaps = 20/165 (12%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75
           +  I   RP +L E        S+ K+  +        + H+L  GPPG GKTT    + 
Sbjct: 2   NPWIEKYRPTSLYEIV----LDSDYKIMFDT-MVETLYIPHMLLYGPPGTGKTTTINCLI 56

Query: 76  R------ELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLF---------IDEIHRLSII 120
           +       +  N    +         +   + N    D  F         +DE+  ++  
Sbjct: 57  QKITEKYNMKHNVIHLNASDDRGVDIIRNTIYNFVQSDGFFTNSELKFVILDEVDSMTKQ 116

Query: 121 VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165
            ++ L   +E   +   +     ++ +     +   +        
Sbjct: 117 AQQSLLLLLEHKNVRFFLMCNYISKLIPSLRQKCLTLHFYNIPNY 161


>gi|260654193|ref|ZP_05859683.1| cell division cycle protein 48-like protein [Jonquetella anthropi
           E3_33 E1]
 gi|260631178|gb|EEX49372.1| cell division cycle protein 48-like protein [Jonquetella anthropi
           E3_33 E1]
          Length = 682

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 66/284 (23%), Positives = 108/284 (38%), Gaps = 29/284 (10%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLED 105
           E    VL  GPPG GKT +A+ VA+E    F S SGP I           L  L T  + 
Sbjct: 198 EPPKGVLLYGPPGTGKTLIARAVAQETDAWFASISGPEIIGKYYGESEERLRDLFTQAQQ 257

Query: 106 R--DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
               V+FIDE+  ++   +++     E      +V +  +        S+  ++AAT   
Sbjct: 258 NAPAVVFIDELDAIAPRRQDM---GAEKQVERRVVSQLLTLLDGLPARSQVVVMAATNLP 314

Query: 164 GLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRI 221
             +   L+   RF   I +     +  K I+    +   LA  D    ++A ++ G    
Sbjct: 315 DSIDPALRRPGRFDREIEIPMPTRQARKEILAVHCQPVPLA-DDVDLDQVAAQAYGFVGA 373

Query: 222 AGRLLRRVRDFAE---VAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGG 278
               L R    A    +A   T  + +   A+      K    QL       +       
Sbjct: 374 DLAALVREAALAAWRRIAPDGTFPKNLEAEAVTMDDF-KKALAQLSPSVTRQLRTEIA-- 430

Query: 279 PVGIETISAGLSEPRDAIED------LIEPYMIQQGFIQRTPRG 316
           PV  + I  GL++ +  ++D      ++ P ++  G   R PRG
Sbjct: 431 PVSWDDI-GGLADAKAQLKDLTKQAFVLAPRLLDAGI--RPPRG 471



 Score = 37.0 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 54/231 (23%), Positives = 87/231 (37%), Gaps = 34/231 (14%)

Query: 24  PRTLEEFTGQVEACSNLKVFIEAA--------KARAEALDHVLFVGPPGLGKTTLAQVVA 75
           P + ++  G  +A + LK   + A         A        L  GP G GKT LAQ VA
Sbjct: 431 PVSWDDIGGLADAKAQLKDLTKQAFVLAPRLLDAGIRPPRGALVSGPSGTGKTMLAQAVA 490

Query: 76  RELGVNFRSTSGPVI------AKAGDLAALLTNLED--RDVLFIDEIHRLSIIV-EEILY 126
            +    F S SGP +        A  L  +  +       VLF DE   L      +   
Sbjct: 491 GQRTAIFLSASGPALCAAGPAEAARALREIFVSARRAAPAVLFFDEAEALLRPRGRDNGL 550

Query: 127 PAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
            ++  F++D +  +               ++AAT+R  LL + +    RF   I L   +
Sbjct: 551 TSVFYFEMDRLTPDDAVF-----------ILAATSRPDLLDSGVFSGCRFDRQIELKLPD 599

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235
             +   I+    K   L     A C++   ++ +  ++G  LRR  + A  
Sbjct: 600 ETERAQILSLALKGLRLP----ALCDVGELAKESDSMSGAALRRWTESAAA 646


>gi|227872254|ref|ZP_03990614.1| M41 family FtsH endopeptidase [Oribacterium sinus F0268]
 gi|227841901|gb|EEJ52171.1| M41 family FtsH endopeptidase [Oribacterium sinus F0268]
          Length = 649

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 53/258 (20%), Positives = 91/258 (35%), Gaps = 27/258 (10%)

Query: 10  RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGP 62
            N  + +     +R    ++  G+ EA   L   +       + ++  A+     L VGP
Sbjct: 181 SNAREYEKKDDSIR---FKDVAGEDEAKELLTEMVDYLNHPDKYSRIGAKIPKGALLVGP 237

Query: 63  PGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEI 114
           PG GKT LA+ VA E GV F S SG           A  +  L    + +   ++FIDEI
Sbjct: 238 PGTGKTMLAKAVAGEAGVPFFSISGSEFVEMYVGMGAAKVRDLFDQAKKKSPCIIFIDEI 297

Query: 115 HRLSIIVEEILYPAMEDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
             +            ++ +  L  ++ E     S K       L+AAT +   L   L  
Sbjct: 298 DAIGKKRGAGGLGGNDEREQTLNQLLTEMDGFDSNKA----IILLAATNQPDQLDPALLR 353

Query: 173 --RFGIPIRLNFYEIEDLKTIVQ-RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
             RF   + +   + +    I++   AK+         A   A        +A  +    
Sbjct: 354 PGRFDRRVPVELPDYQGRIDILKVHSAKIKMSDNVSLEAIAKAAPGASGAELANIINEAA 413

Query: 230 RDFAEVAHAKTITREIAD 247
                    + I  ++ +
Sbjct: 414 LRAVRAGRERVIQSDLEE 431


>gi|218283933|ref|ZP_03489801.1| hypothetical protein EUBIFOR_02397 [Eubacterium biforme DSM 3989]
 gi|218215512|gb|EEC89050.1| hypothetical protein EUBIFOR_02397 [Eubacterium biforme DSM 3989]
          Length = 651

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 48/209 (22%), Positives = 80/209 (38%), Gaps = 12/209 (5%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--V 108
           +L VGPPG GKT LA+ VA E  V F S SG       V   A  +  +    +     +
Sbjct: 196 ILMVGPPGTGKTLLAKAVAGEANVPFFSISGSDFVEMFVGTGASRVRDMFKTAQKSAPCI 255

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +FIDEI  +       +    ++ +  L   +         + +   +IAAT R  +L  
Sbjct: 256 IFIDEIDAVGRQRGAGMGGGNDEREQTL--NQLLVEMDGMTDNAGIVVIAATNRPDVLDP 313

Query: 169 PLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226
            L    RF   + ++  +I+  + I+   A+   LA     A         +      +L
Sbjct: 314 ALLRSGRFDRRVTVSLPDIKGREAILHVHARNKKLASDVSLANLAKRTPGFSGADLANVL 373

Query: 227 RRVRDFAEVAHAKTITREIADAALLRLAI 255
                 A   +   +T    D A+ R+ +
Sbjct: 374 NEGAILAVRKNEAKVTMTDLDEAIDRVMM 402


>gi|152205934|dbj|BAF73714.1| valosin containing protein [Haemaphysalis longicornis]
          Length = 808

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 54/276 (19%), Positives = 90/276 (32%), Gaps = 53/276 (19%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------------VLFVGPPGLGKTTLA 71
           +L E  G  +     K   +  +     L H              +L  GPPG GKT +A
Sbjct: 197 SLNE-VGYDDIGGCRKQLAQIKEMVELPLRHPSLFRAIGVKPPRGILLYGPPGTGKTLIA 255

Query: 72  QVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEE 123
           + VA E G  F   +GP I          +L       E     ++F DE+  ++   E+
Sbjct: 256 RAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFFDELDAIAPKREK 315

Query: 124 ---ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPI 178
               +   +    L LM G    A  +        ++AAT R   +   L+   RF   +
Sbjct: 316 THGEVDRRIVSQLLTLMDGLKQRAHVI--------VMAATNRPNSIDAALRRFGRFDREV 367

Query: 179 RLNFYEIEDLKTIVQRGAK--LTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
            +   +      I++   K      +V  +       R R  PR    L           
Sbjct: 368 DIGIPDATGRLEILRIHTKNMKLAESVDLDKIAAETHRLRVGPRDLAAL----------- 416

Query: 237 HAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIA 272
                +         ++ +  +  DQ+D   L  +A
Sbjct: 417 ----CSEAALQQIREKMDLIDLEDDQIDAEVLNSLA 448



 Score = 52.0 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/156 (24%), Positives = 66/156 (42%), Gaps = 12/156 (7%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------V 108
           VLF GPPG GKT LA+ +A E   NF S  GP +     G+  A + ++ D+       V
Sbjct: 516 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCV 575

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           LF DE+  ++      +  A      D ++ +  +      +     +I AT R  ++  
Sbjct: 576 LFFDELDSIAKARGGNVGDA--GGAADRVINQILTEMDGMSSKKNVFIIGATNRPDIIDP 633

Query: 169 PLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLA 202
            +    R    I +   + +    I++   + + LA
Sbjct: 634 AILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPLA 669


>gi|63054529|ref|NP_593287.2| AAA family ATPase Cdc48 [Schizosaccharomyces pombe 972h-]
 gi|27151477|sp|Q9P3A7|CDC48_SCHPO RecName: Full=Cell division cycle protein 48
 gi|159883922|emb|CAB99275.2| AAA family ATPase Cdc48 [Schizosaccharomyces pombe]
          Length = 815

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 79/230 (34%), Gaps = 30/230 (13%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLED 105
           +    +L  GPPG GKT +A+ VA E G  F   +GP I          +L       E 
Sbjct: 256 KPPRGILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEK 315

Query: 106 RD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163
               ++FIDEI  ++   E+             +V +  +        S   ++AAT R 
Sbjct: 316 NSPAIIFIDEIDSIAPKREK-----TNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRP 370

Query: 164 GLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRI 221
             +   L+   RF   + +   +      I++   K   LA  D    +IA  + G    
Sbjct: 371 NSIDPALRRFGRFDREVDVGIPDPTGRLEILRIHTKNMKLA-DDVDLEQIAAETHGYVGS 429

Query: 222 AGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMI 271
               L               +         ++ +  +  D++D   L  +
Sbjct: 430 DLASL--------------CSEAAMQQIREKMDMIDLDEDEIDAEVLDSL 465



 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 82/227 (36%), Gaps = 27/227 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVARE 77
             E+  G  E    L+  ++     AE            VLF GPPG GKT LA+ +A E
Sbjct: 495 RWEDIGGLEEVKRELRETVQMPVMYAEKFLRFGVTPSKGVLFFGPPGTGKTLLAKAIANE 554

Query: 78  LGVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
              NF S  GP +         +   D+           V+F+DE+  ++         A
Sbjct: 555 CSANFISVKGPELLSMWFGESESNVRDIFDKARAAAP-CVVFLDELDSIAKARGAS---A 610

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
            +    D +V +  +      +     +I AT R   +   L    R    I +   + E
Sbjct: 611 GDSGGGDRVVNQLLTEMDGVNSKKNVFVIGATNRPDQIDPALMRPGRLDQLIYVPLPDEE 670

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
              +I+Q   + T +A       ++   ++ T   +G  L  V   A
Sbjct: 671 ARFSILQTQLRHTPVAED----VDLRAVAKATHGFSGADLEFVVQRA 713


>gi|315652556|ref|ZP_07905537.1| cell division protein FtsH [Eubacterium saburreum DSM 3986]
 gi|315485185|gb|EFU75586.1| cell division protein FtsH [Eubacterium saburreum DSM 3986]
          Length = 603

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 47/197 (23%), Positives = 80/197 (40%), Gaps = 22/197 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALD-------HVLFVGPPGLGKTTLAQVVAREL 78
              +  G+ EA  NL   ++     ++  D        +L VGPPG GKT LA+ VA E 
Sbjct: 163 KFSDVAGEDEAKENLTEIVDYLHDPSKYKDIGASMPKGILLVGPPGTGKTMLAKAVAGEA 222

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG           A  +  L    +++   ++FIDEI  +    +  +    E
Sbjct: 223 NVPFFSMSGSEFVEMFVGMGASKVRDLFKQAKEKAPCIVFIDEIDAIGKKRDGQIGGNDE 282

Query: 131 -DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            +  L+ ++ E           S   ++AAT R   L   L    RF   + +   +++ 
Sbjct: 283 REQTLNQLLTEMDGFEGN----SGVMILAATNRPDALDPALTRPGRFDRRVPVELPDLKG 338

Query: 188 LKTIVQRGAKLTGLAVT 204
            + I++  AK   ++  
Sbjct: 339 REEILKVHAKKIKISDD 355


>gi|307110563|gb|EFN58799.1| hypothetical protein CHLNCDRAFT_140589 [Chlorella variabilis]
          Length = 841

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/257 (17%), Positives = 86/257 (33%), Gaps = 28/257 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVARE 77
           T ++  G       L+  ++      E            VLF GPPG GKT LA+ +A E
Sbjct: 504 TWDDIGGLEGVKRELQETVQNPVEHPEKFEKYGMAPSKGVLFYGPPGCGKTLLAKAIANE 563

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
              NF S  GP +          ++  +          VLF DE+  +++        A 
Sbjct: 564 CQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIAVQRGSSSGDA- 622

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                D ++ +  +            +I AT R  ++   L    R    I +   +   
Sbjct: 623 -GGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALMRPGRLDQLIYIPLPDDGS 681

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            ++I +   + + +A   +      +    +      + +R   +A         RE  +
Sbjct: 682 RRSIFKSALRKSPVAPDVDLDLLSKVTQGFSGADITEICQRAVKYA--------IRESIE 733

Query: 248 AALLRLAIDKMGFDQLD 264
             + R    +   D +D
Sbjct: 734 KDIERNRRKQENEDLMD 750



 Score = 52.0 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 44/119 (36%), Gaps = 23/119 (19%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------------VLFVGPPGLGKTTLA 71
            L+E  G  +     K   +  +     L H              +L  GPPG GKT +A
Sbjct: 208 RLDE-VGYDDVGGVRKQMAQIRELVELPLRHPQLFKTIGVKPPKGILLYGPPGSGKTLIA 266

Query: 72  QVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVE 122
           + VA E G  F   +GP I          +L       E     ++FIDEI  ++   E
Sbjct: 267 RAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDEIDSIAPKRE 325


>gi|302500997|ref|XP_003012491.1| hypothetical protein ARB_01104 [Arthroderma benhamiae CBS 112371]
 gi|291176050|gb|EFE31851.1| hypothetical protein ARB_01104 [Arthroderma benhamiae CBS 112371]
          Length = 1063

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 71/192 (36%), Gaps = 33/192 (17%)

Query: 28  EEFTGQVEACSNLKVFIEAAKARAEALDHVL-FVGPPGLGKTTLAQVVARELGVNFRSTS 86
           E+  G  +    +  FI   K R      +L FVGPPG+GKT++ + +AR L   +   S
Sbjct: 528 EDHYGLKDVKDRILEFIAVGKLRGTVEGKILCFVGPPGVGKTSIGKSIARALNREYYRFS 587

Query: 87  GPVIAKAGDLAALLTNL----------------EDRDVLFIDEIHRLSIIVE-------- 122
              +    ++                        +  ++ IDE+ ++    +        
Sbjct: 588 VGGLTDVAEIKGHRRTYVGALPGRIIQALKKCQTENPLILIDEVDKIGRGHQGDPASALL 647

Query: 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNF 182
           E+L P      LD           + ++LS+   +        +  PL DR  + I L+ 
Sbjct: 648 ELLDPEQNSSFLD-------HYMDIPVDLSKVLFVCTANMTDTIPRPLLDRMEL-IELSG 699

Query: 183 YEIEDLKTIVQR 194
           Y  ++   I +R
Sbjct: 700 YVADEKMAIAER 711


>gi|229074127|ref|ZP_04207174.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           Rock4-18]
 gi|229094787|ref|ZP_04225793.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           Rock3-29]
 gi|229100862|ref|ZP_04231670.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           Rock3-28]
 gi|229113742|ref|ZP_04243178.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           Rock1-3]
 gi|228669739|gb|EEL25145.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           Rock1-3]
 gi|228682562|gb|EEL36631.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           Rock3-28]
 gi|228688655|gb|EEL42527.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           Rock3-29]
 gi|228709021|gb|EEL61147.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           Rock4-18]
          Length = 612

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 62/248 (25%), Positives = 88/248 (35%), Gaps = 27/248 (10%)

Query: 26  TLEEFTG-----QV--EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G     Q   E    LK   + A+  A     VL VGPPG GKT LA+ VA E 
Sbjct: 139 RFRDVAGADEEKQELVEVVEFLKDPRKFAEVGARIPKGVLLVGPPGTGKTLLARAVAGEA 198

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG       V   A  +  L  N +     ++FIDEI  +       L    +
Sbjct: 199 GVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCIIFIDEIDAVGRQRGAGLGGGHD 258

Query: 131 DFQLD----LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
           + +      L+  +G  A    I      +IAAT R  +L   L    RF   I ++  +
Sbjct: 259 EREQTLNQLLVEMDGFGANEGII------IIAATNRPDILDPALLRPGRFDRQITVDRPD 312

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +   + +++  A+   L                +      LL      A     K I   
Sbjct: 313 VNGREAVLKVHARNKPLDDHINLRAIATRTPGFSGADLENLLNEAALVAARQDKKKIDMS 372

Query: 245 IADAALLR 252
             D A  R
Sbjct: 373 DIDEATDR 380


>gi|229170916|ref|ZP_04298519.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus MM3]
 gi|228612582|gb|EEK69801.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus MM3]
          Length = 612

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 62/248 (25%), Positives = 88/248 (35%), Gaps = 27/248 (10%)

Query: 26  TLEEFTG-----QV--EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G     Q   E    LK   + A+  A     VL VGPPG GKT LA+ VA E 
Sbjct: 139 RFRDVAGADEEKQELVEVVEFLKDPRKFAEVGARIPKGVLLVGPPGTGKTLLARAVAGEA 198

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG       V   A  +  L  N +     ++FIDEI  +       L    +
Sbjct: 199 GVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCIIFIDEIDAVGRQRGAGLGGGHD 258

Query: 131 DFQLD----LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYE 184
           + +      L+  +G  A    I      +IAAT R  +L   L    RF   I ++  +
Sbjct: 259 EREQTLNQLLVEMDGFGANEGII------IIAATNRPDILDPALLRPGRFDRQITVDRPD 312

Query: 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244
           +   + +++  A+   L                +      LL      A     K I   
Sbjct: 313 VNGREAVLKVHARNKPLDDHINLRAIATRTPGFSGADLENLLNEAALVAARQDKKKIDMS 372

Query: 245 IADAALLR 252
             D A  R
Sbjct: 373 DIDEATDR 380


>gi|254526680|ref|ZP_05138732.1| cell division protein FtsH2 [Prochlorococcus marinus str. MIT 9202]
 gi|221538104|gb|EEE40557.1| cell division protein FtsH2 [Prochlorococcus marinus str. MIT 9202]
          Length = 584

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 55/267 (20%), Positives = 101/267 (37%), Gaps = 33/267 (12%)

Query: 25  RTLEEFTGQVEACSNLK---VFIEAAKA----RAEALDHVLFVGPPGLGKTTLAQVVARE 77
              ++  G  EA   LK    F+   K      A+    VL +GPPG GKT LA+ +A E
Sbjct: 131 TRFDDVAGVPEAAEELKEVITFLNEPKKFQNLGAKVPKGVLLIGPPGTGKTLLAKAIAGE 190

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
            GV F S S            A  +  L +  +++   ++FIDEI  +       +    
Sbjct: 191 SGVPFLSISASEFVELFVGVGASRVRDLFSKAKEKSPCIIFIDEIDSIGRQRGSGIGGGN 250

Query: 130 EDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           ++ +  L  ++ E         + S   ++AAT R  +L   L    RF   I +   ++
Sbjct: 251 DEREQTLNQLLTELDGF----ADNSGIIVLAATNRPDILDKALLRPGRFDRKIEVMLPDL 306

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           +  K I+     +  L+       ++   +  T   +G       D A + +   I    
Sbjct: 307 DGRKKILS----VHSLSKPLSTEVDLGYWASRTIGFSG------ADLANLMNESAIHCAR 356

Query: 246 ADAALLRLAIDKMGFDQLDLRYLTMIA 272
             + L+     +   D++ +   + + 
Sbjct: 357 DKSKLISDLHIENALDKITIGLRSSLI 383


>gi|195037092|ref|XP_001989999.1| GH18484 [Drosophila grimshawi]
 gi|229559926|sp|B4JII0|SPAST_DROGR RecName: Full=Spastin
 gi|193894195|gb|EDV93061.1| GH18484 [Drosophila grimshawi]
          Length = 782

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 49/245 (20%), Positives = 87/245 (35%), Gaps = 17/245 (6%)

Query: 29  EFTGQVEACSNLKVFIEAAKARAE-------ALDHVLFVGPPGLGKTTLAQVVARELGVN 81
           +  GQ  A   L+  +     R E           +L  GPPG GKT LA+ VA E    
Sbjct: 508 DIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSAT 567

Query: 82  FRSTSGPVIAK--AGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133
           F + S   +     GD   L+  L          ++FIDE+  L        + A    +
Sbjct: 568 FLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSNEHEASRRLK 627

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
            + +V           +  R  ++AAT R   L      RF   + ++  +++  + ++ 
Sbjct: 628 TEFLVEFDGL--PGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDVQTRELLLN 685

Query: 194 RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
           R  +  G  +  +A   +A  + G        L +      +        +  D + +R 
Sbjct: 686 RLLQKQGSPLDSDALGRLAKITEGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRQ 745

Query: 254 AIDKM 258
             +K 
Sbjct: 746 ITEKD 750


>gi|153209334|ref|ZP_01947353.1| ATP-dependent metallopeptidase HflB [Coxiella burnetii 'MSU Goat
           Q177']
 gi|212218758|ref|YP_002305545.1| cell division protein [Coxiella burnetii CbuK_Q154]
 gi|120575405|gb|EAX32029.1| ATP-dependent metallopeptidase HflB [Coxiella burnetii 'MSU Goat
           Q177']
 gi|212013020|gb|ACJ20400.1| cell division protein [Coxiella burnetii CbuK_Q154]
          Length = 650

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 51/247 (20%), Positives = 92/247 (37%), Gaps = 19/247 (7%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAK-------ARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  EA   +K  +E  +          +    VL VGPPG GKT LA+ VA E 
Sbjct: 154 TFDDVAGVDEAKEEVKELVEFLRDPGKFQRLGGKMPCGVLLVGPPGTGKTLLAKAVAGEA 213

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F + SG       V   A  +  +    + +   ++FIDEI  +       L    +
Sbjct: 214 KVPFFTISGSDFVEMFVGVGASRVRDMFDQAKKQAPCIIFIDEIDAVGRHRGAGLGGGHD 273

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
           + +  L   +               ++AAT R  +L   L    RF   + +   +I+  
Sbjct: 274 EREQTL--NQLLVEMDGFEGKEGIIVMAATNRPDVLDPALLRPGRFDRQVVVPLPDIKGR 331

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           + I++       LA   +A+         +      ++     FA   + K ++    + 
Sbjct: 332 EYILKVHMNKLPLAKDVKASVIARGTPGFSGADLANIVNEAALFAARENKKDVSMSEFER 391

Query: 249 ALLRLAI 255
           A  ++ +
Sbjct: 392 AKDKIMM 398


>gi|21325468|dbj|BAC00090.1| ATP-dependent Zn proteases [Corynebacterium glutamicum ATCC 13032]
          Length = 860

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 59/245 (24%), Positives = 89/245 (36%), Gaps = 21/245 (8%)

Query: 26  TLEEFTGQVEACSNL---KVFIEAAKARAEALD-----HVLFVGPPGLGKTTLAQVVARE 77
           T  +  G  EA   L   K F+E    R EAL       VL  GPPG GKT LA+ VA E
Sbjct: 170 TFADVAGAEEAVDELHEIKDFLE-DPTRYEALGAKIPRGVLLYGPPGTGKTLLARAVAGE 228

Query: 78  LGVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
            GV F S SG       V   A  +  L    ++    ++F+DEI  +       +    
Sbjct: 229 AGVPFYSISGSDFVEMFVGVGASRVRDLFKQAKENSPCIIFVDEIDAVGRARGSGMGGGH 288

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
           ++ +  L   +         +     L+AAT R  +L   L    RF   I +   ++  
Sbjct: 289 DEREQTL--NQLLVEMDGFGDRQGVILMAATNRPDVLDPALLRPGRFDRQIPVTNPDLRG 346

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            + I++  AK    A   +        +  +      +L              IT +  +
Sbjct: 347 REQILEVHAKGKPFAPDADIKALAKRTAGMSGADLANVLNEAALLTARVGGNVITADALE 406

Query: 248 AALLR 252
            A  R
Sbjct: 407 EATDR 411


>gi|118352130|ref|XP_001009338.1| ATPase, AAA family protein [Tetrahymena thermophila]
 gi|89291105|gb|EAR89093.1| ATPase, AAA family protein [Tetrahymena thermophila SB210]
          Length = 669

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 72/183 (39%), Gaps = 24/183 (13%)

Query: 29  EFTGQVEACSNLKVFIEAAKARAEALDHV--------LFVGPPGLGKTTLAQVVARELGV 80
           +  G +E    +K  IE      +A   +        L  GPPG  KT +A+ +A E  +
Sbjct: 413 DIGGYLEVKDQIKQVIEWPLKHPDAFKRMGIQPSKGILLYGPPGCSKTMIAKAIATESKL 472

Query: 81  NFRSTSGPVIAK--AGDLAALLTNLEDR------DVLFIDEIHRLSIIVEEILYPAMEDF 132
           NF +  GP +     GD    +  +  R       V+F DEI  +    +  +   + + 
Sbjct: 473 NFLAVKGPELFSKYVGDSEKAIREVFRRARLCAPSVIFFDEIDAI--ATQRSVNTDVSER 530

Query: 133 QLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKT 190
            L  M+ E          L    ++AAT R  ++   L    RF   I +   +I+  + 
Sbjct: 531 VLIQMLTEMDGFE----GLKNVVIVAATNRPEIIDKALTRPGRFDHLIYVPPPDIDCRRE 586

Query: 191 IVQ 193
           I++
Sbjct: 587 ILK 589


>gi|91783911|ref|YP_559117.1| FtsH-2 peptidase [Burkholderia xenovorans LB400]
 gi|91687865|gb|ABE31065.1| membrane protease FtsH catalytic subunit [Burkholderia xenovorans
           LB400]
          Length = 659

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 69/261 (26%), Positives = 104/261 (39%), Gaps = 37/261 (14%)

Query: 23  RPR---------TLEEFTGQVEACSNLKVFIEAAKAR-------AEALDHVLFVGPPGLG 66
           RPR         T ++  G  EA + LK  +E  +          +    VL VG PG G
Sbjct: 156 RPRVYVAQDTDVTFDDIAGIDEAKAELKQIVEFLRNAERYRRLGGKIPKGVLIVGAPGTG 215

Query: 67  KTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLS 118
           KT LA+ VA E GV F S SG           A  +  L    + +   ++FIDE+  L 
Sbjct: 216 KTLLAKAVAGEAGVPFFSISGSAFVEMFVGVGAARVRDLFEQAQKKAPCIVFIDELDALG 275

Query: 119 IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGI 176
            +    +    ++ +  L   +           S   ++AAT R  +L   L    RF  
Sbjct: 276 KVRGAGVTSGNDEREQTL--NQLLVEMDGFQPNSGVIILAATNRPEILDPALLRPGRFDR 333

Query: 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVA 236
            I ++  ++   + I+Q   K   LA  D    EIA R   TP  AG  L  V + A + 
Sbjct: 334 HIAIDRPDLNGRRQILQVHVKKVTLA-ADVDLAEIASR---TPGFAGADLANVVNEAALH 389

Query: 237 HAKTITREIADAALLRLAIDK 257
            A     E+  +A+  +  D+
Sbjct: 390 AA-----ELDKSAVGMVDFDE 405


>gi|18416240|ref|NP_567691.1| FtsH protease, putative [Arabidopsis thaliana]
 gi|2262118|gb|AAB63626.1| cell division protein isolog [Arabidopsis thaliana]
 gi|4972098|emb|CAB43894.1| cell division protein-like [Arabidopsis thaliana]
 gi|7269243|emb|CAB81312.1| cell division protein-like [Arabidopsis thaliana]
 gi|332659430|gb|AEE84830.1| FtsH extracellular protease [Arabidopsis thaliana]
          Length = 946

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 87/250 (34%), Gaps = 23/250 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAK------ARAEALDH-VLFVGPPGLGKTTLAQVVAREL 78
              +  G  EA   L+  ++  K             H VL  GPPG GKT +A+ +A E 
Sbjct: 428 KFADVAGIDEAVDELQELVKYLKNPDLFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 487

Query: 79  GVNFRSTSGPVIAKA------GDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAME 130
           GV F   +G    +         +  L    +     V+FIDEI  L+   + I     +
Sbjct: 488 GVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKENSD 547

Query: 131 DFQLDLMVGEGPSARSVKINLSRF------TLIAATTRVGLLTNPLQD--RFGIPIRLNF 182
                       +   + I L  F        + AT R  LL   L    RF   IR+  
Sbjct: 548 QLYNAATQERETTLNQLLIELDGFDTGKGVIFLGATNRRDLLDPALLRPGRFDRKIRVRP 607

Query: 183 YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTIT 242
              +    I++  A    ++ + + +   +     +     +L++     A      +I 
Sbjct: 608 PNAKGRLDILKIHASKVKMSDSVDLSSYASNLPGWSGAKLAQLVQEAALVAVRKTHNSIL 667

Query: 243 REIADAALLR 252
           +   D A+ R
Sbjct: 668 QSDMDDAVDR 677


>gi|321263001|ref|XP_003196219.1| cell division cycle protein 48 [Cryptococcus gattii WM276]
 gi|317462694|gb|ADV24432.1| Cell division cycle protein 48, putative [Cryptococcus gattii
           WM276]
          Length = 810

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 47/259 (18%), Positives = 88/259 (33%), Gaps = 27/259 (10%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVAR 76
            T  +  G  +    L+  ++      E            VLF GPPG GKT LA+ +A 
Sbjct: 476 TTWNDIGGLDKVKRELQETVQFPVEHPEKFLKYGMSPSKGVLFYGPPGTGKTLLAKAIAN 535

Query: 77  ELGVNFRSTSGPVIAKA--GDLAALLTNLEDRD------VLFIDEIHRLSIIVEEILYPA 128
           E   NF S  GP +     G+  A + ++ D+       V+F DE+  ++          
Sbjct: 536 ECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCVMFFDELDSIAKSRGSS--AG 593

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
                 D ++ +  +            +I AT R   + + L    R    I +   + E
Sbjct: 594 DGGGSSDRVLNQILTEMDGMNAKKNVFIIGATNRPDQIDSALLRPGRLDQLIYIPLPDEE 653

Query: 187 DLKTIVQRGAKLTGLA-------VTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
              +I++   + + +        +    A           + A +L  R    +++   +
Sbjct: 654 SRLSILKATLRKSPIDPRVDLDFLAKNTAGFSGADLTEICQRAAKLAIRASIDSDIRKER 713

Query: 240 TITREIADAALLRLAIDKM 258
               +   A      ID+ 
Sbjct: 714 ERNEKAEAAGQDVELIDEE 732



 Score = 52.4 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 76/219 (34%), Gaps = 19/219 (8%)

Query: 52  EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNLED 105
           +    +L  GPPG GKT +A+ VA E G  F   +GP I          +L       E 
Sbjct: 238 KPPRGILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEK 297

Query: 106 R--DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV-GEGPSARSVKINLSRFTLIAATTR 162
               ++FIDE+  ++   E+            L+   +G  AR      S   ++AAT R
Sbjct: 298 NSPSIIFIDELDSIAPKREKANGEVERRVVSQLLTLMDGLKAR------SNVVVMAATNR 351

Query: 163 VGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPR 220
              +   L+   RF   + +   +      I++   K   L+   +     A        
Sbjct: 352 PNSIDPALRRFGRFDREVDIGIPDPTGRLEILRIHTKNMKLSDDVDLEQIAADTHGYVGA 411

Query: 221 IAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMG 259
               L        +    K    ++ +  +    +D +G
Sbjct: 412 DMASLCSEAAM--QQIREKMDLIDLDEDTIDAEVLDSLG 448


>gi|254429578|ref|ZP_05043285.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Alcanivorax
           sp. DG881]
 gi|196195747|gb|EDX90706.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Alcanivorax
           sp. DG881]
          Length = 426

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/152 (25%), Positives = 64/152 (42%), Gaps = 33/152 (21%)

Query: 5   EGLLSRNVSQEDADISLLR-PR------TLEEF-TGQVEACSNL--------KVFIEAAK 48
             ++   V ++ +D +  R P+      TL+E+  GQ  A   L        K      K
Sbjct: 46  NDIIREEVQEDTSDTAGERLPKPNEIKDTLDEYVIGQERAKKVLAVAVYNHYKRLRSGGK 105

Query: 49  ARAEA---LDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAALLT 101
            R E      ++L +GP G GKT LA+ +AR L V F       + +AG    D+  ++ 
Sbjct: 106 GRDEVELGKSNILLIGPTGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQ 165

Query: 102 NL----------EDRDVLFIDEIHRLSIIVEE 123
            L            R +++IDEI ++S   + 
Sbjct: 166 KLLQKCDYDVDKAQRGIVYIDEIDKISRKSDN 197


>gi|167772096|ref|ZP_02444149.1| hypothetical protein ANACOL_03470 [Anaerotruncus colihominis DSM
           17241]
 gi|167665894|gb|EDS10024.1| hypothetical protein ANACOL_03470 [Anaerotruncus colihominis DSM
           17241]
          Length = 653

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 62/250 (24%), Positives = 91/250 (36%), Gaps = 32/250 (12%)

Query: 24  PR-TLEEFTGQVEACSNLKVFIEAAKARAE-------ALDHVLFVGPPGLGKTTLAQVVA 75
           P+ T  +  G  E    L   +E  K  ++           VL +GPPG GKT LA+ VA
Sbjct: 170 PKVTFNDVAGADEEKEELVEIVEFLKNPSKFNSLGARIPKGVLLMGPPGTGKTLLAKAVA 229

Query: 76  RELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYP 127
            E GV F S SG       V   A  +  L    +     ++FIDEI  +       L  
Sbjct: 230 GEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNSPSIVFIDEIDAVGRHRGAGLGG 289

Query: 128 AMEDFQLDL------MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIR 179
             ++ +  L      M G G +        S   +IAAT R  +L   L    RF   I 
Sbjct: 290 GHDEREQTLNQLLVEMDGFGTN--------SGVIVIAATNRRDILDPALLRPGRFDRQIA 341

Query: 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAK 239
           + + +I+  + I++   K   +          A  +  T      L       A   + K
Sbjct: 342 VGYPDIKGREAILRVHTKNKPIGPDVNLKTIAASTAGFTGADLENLTNEAALLAAKKNHK 401

Query: 240 TITREIADAA 249
            IT    + A
Sbjct: 402 AITMVEIEEA 411


>gi|110741581|dbj|BAE98739.1| hypothetical protein [Arabidopsis thaliana]
          Length = 751

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/215 (20%), Positives = 75/215 (34%), Gaps = 37/215 (17%)

Query: 9   SRNVSQEDADISLLRPR---------TLEEFTGQVEACSNLKVFIEAAKARAE------- 52
           +  V  ++     +RP          T  +     E   +L+  +     R +       
Sbjct: 489 APEVVPDNEFEKRIRPEVIPANEIGVTFADIGSLDETKDSLQELVMLPLRRPDLFQGGLL 548

Query: 53  -ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------GDLAALLTNLED 105
                +L  GPPG GKT LA+ +A E G +F + S   I          ++ AL T    
Sbjct: 549 KPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAK 608

Query: 106 --RDVLFIDEIH-----RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIA 158
               ++F+DE+      R  +   E +     +F              +     R  ++A
Sbjct: 609 VSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFM-------THWDGLMTKPGERILVLA 661

Query: 159 ATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193
           AT R   L   +  RF   I +    IE  + I++
Sbjct: 662 ATNRPFDLDEAIIRRFERRIMVGLPSIESREKILR 696


>gi|66827443|ref|XP_647076.1| hypothetical protein DDB_G0267492 [Dictyostelium discoideum AX4]
 gi|60475264|gb|EAL73199.1| hypothetical protein DDB_G0267492 [Dictyostelium discoideum AX4]
          Length = 720

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 56/248 (22%), Positives = 93/248 (37%), Gaps = 29/248 (11%)

Query: 23  RP-RTLEEFTGQVEACSNLKVFIEAAKARAE-------ALDHVLFVGPPGLGKTTLAQVV 74
           RP  T  +  G  EA   L+  ++  +   +           +L VGPPG GKT LA+ +
Sbjct: 158 RPNTTFADVMGAEEAKGELQDLVDFLRNPEKYYRRNIVMPKGILLVGPPGTGKTLLAKSL 217

Query: 75  ARELGVNFRSTSGPVIA------KAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEIL- 125
           A E  V+F + +G           A  +  L          ++FIDEI  +     + + 
Sbjct: 218 AGEARVSFITINGSEFEEAFVGVGAKRVRELFEAARKNSPCIVFIDEIDSVGGSRTKRVN 277

Query: 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183
           Y   E     L+  +G   R   +      ++AAT     L   L    RF   I++   
Sbjct: 278 YHPSEALNQLLVELDGFDGREGVM------VMAATNYQDSLDTALIRSGRFDRIIQVPLP 331

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           + +  K+I+    K   +A            ++ TP  +G  L  + ++A +   K    
Sbjct: 332 DGKARKSIIDHYLKDKPIASH----VNTTTIAQSTPGFSGADLFNLVNWAALETTKHNLP 387

Query: 244 EIADAALL 251
           EI    L 
Sbjct: 388 EITMEQLE 395


>gi|186682152|ref|YP_001865348.1| ATP-dependent metalloprotease FtsH [Nostoc punctiforme PCC 73102]
 gi|186464604|gb|ACC80405.1| ATP-dependent metalloprotease FtsH [Nostoc punctiforme PCC 73102]
          Length = 642

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 59/274 (21%), Positives = 100/274 (36%), Gaps = 23/274 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
             E+  G  EA  +L+  +   K         A     VL +GPPG GKT LA+ +A E 
Sbjct: 186 KFEDVAGVEEAKEDLEEVVTFLKQPERFTAVGARIPKGVLLIGPPGTGKTLLAKAIAGEA 245

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S SG           A  +  L    ++    ++FIDEI  +       +    +
Sbjct: 246 GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCLIFIDEIDAVGRQRGAGIGGGND 305

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E               +IAAT R  +L   L    RF   + ++  +++
Sbjct: 306 EREQTLNQLLTEMDGFEGNTG----IIIIAATNRPDVLDAALLRPGRFDRQVMVDAPDLK 361

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
               I++  A+   +  +             T      LL            + +T    
Sbjct: 362 GRLEILKVHARNKKIDPSVSLEAIARRTPGFTGADLANLLNEAAILTARRRKEAVTILEI 421

Query: 247 DAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPV 280
           DAA+ R+     G   +D +   +IA +  G  +
Sbjct: 422 DAAVDRVVAGMEGTALVDSKSKRLIAYHEVGHAL 455


>gi|315925531|ref|ZP_07921741.1| exopolyphosphatase [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315621072|gb|EFV01043.1| exopolyphosphatase [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 652

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 53/229 (23%), Positives = 84/229 (36%), Gaps = 28/229 (12%)

Query: 27  LEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79
             +  G+ EA  NL   +       + A   A     VL VGPPG GKT LA+ VA E  
Sbjct: 194 FSDVAGEEEAKENLSEIVSYLDDPKQYANIGATMPKGVLLVGPPGTGKTMLAKAVAGEAN 253

Query: 80  VNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAMED 131
           V F S SG           A  +  L    +++   ++F+DEI  +        +   ++
Sbjct: 254 VPFFSISGSEFVEMFVGMGASKVRDLFKQAKEKAPCIVFVDEIDAIGQKRAGGKFSGNDE 313

Query: 132 FQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            +  L  ++ E               ++AAT R   L   L    RF   + ++  +++ 
Sbjct: 314 REQTLNQLLTEMDGFDENNG----VVVLAATNRPESLDPALTRPGRFDRRVPVDLPDLKG 369

Query: 188 LKTIVQRGAKL-TGLAVTDEAACEIAMRSRGTPRIAG----RLLRRVRD 231
            + I+   A+        D  A            +A       LR VRD
Sbjct: 370 REAILAVHARKVKKAGGIDFNAIARMAAGASGAELANIVNEAALRAVRD 418


>gi|282862508|ref|ZP_06271570.1| AAA ATPase central domain protein [Streptomyces sp. ACTE]
 gi|282562847|gb|EFB68387.1| AAA ATPase central domain protein [Streptomyces sp. ACTE]
          Length = 1101

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 87/247 (35%), Gaps = 45/247 (18%)

Query: 43   FIEAAKARAEA-------LDHVLFVGPPGLGKTTLAQVVARE--------LGVNFRSTSG 87
             + AAK R  A        +H++F GPPG GKTT+A++ A           G        
Sbjct: 856  LLTAAKQRKAAGLPTPRISNHLIFSGPPGTGKTTVARLYADLLRSLGVLPKGQLVEVARA 915

Query: 88   PVIAK-AGDLAALLTNLEDRD---VLFIDEIHRLSIIVE---------EILYPAMEDFQL 134
             ++ +  G  A L     +R    VLF+DE + L+             + L   MED + 
Sbjct: 916  DLVGRYVGHTAQLTKEAFERALGGVLFVDEAYTLTPEGATSDFGREAVDTLLKLMEDHRD 975

Query: 135  DLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP-LQDRFGIPIRLNFYEIEDLKTIVQ 193
            +++V      R ++  L               +NP L  RF   +    Y  +DL  I+ 
Sbjct: 976  EVVVIAAGYTREMRRFL--------------DSNPGLASRFSRTVEFENYSTDDLLEILS 1021

Query: 194  RGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253
            + A   G   + EA   +       PR         R   ++       +     A+   
Sbjct: 1022 KQATDYGYDCSPEAMTALRGYMDALPR--DHAFGNARTARQILEGMMTRQAGRIGAMSAP 1079

Query: 254  AIDKMGF 260
             +D +  
Sbjct: 1080 GLDDLRL 1086



 Score = 45.1 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 77/224 (34%), Gaps = 42/224 (18%)

Query: 27  LEEFTGQVEACSNLKVFIEAAKARAEALD----HVLFVGPPGLGKTTLAQVVAR--ELGV 80
           L E   QV    NL    +        +     H++F GPPG GKTT+A++         
Sbjct: 566 LTEVKSQVRTLVNLNQLNQRRAQLGMPVPQMSRHLVFSGPPGTGKTTVARLYGGILADLG 625

Query: 81  NFRSTSGPVIAKAGDLAALLTNLEDRD----------VLFIDEIHR-----------LSI 119
             RS     +++A  +A ++     +           VLFIDE +               
Sbjct: 626 VLRSGHLVEVSRADLVAQVIGGTAIKTTEAFNEALGGVLFIDEAYTLLSDSKGSGADFGR 685

Query: 120 IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP-LQDRFGIPI 178
              + L   MED + D+ V        +   LS              +NP L  RF   I
Sbjct: 686 EAVDTLLKLMEDHRDDVAVIAAGYTGEMDSFLS--------------SNPGLASRFTRTI 731

Query: 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222
               Y +++L TI +        A+       +A+     PR A
Sbjct: 732 EFANYSVDELVTITENMCAGHRYALDPRTLDALALHYGRMPRDA 775


>gi|262038799|ref|ZP_06012150.1| cell division protease FtsH [Leptotrichia goodfellowii F0264]
 gi|261747174|gb|EEY34662.1| cell division protease FtsH [Leptotrichia goodfellowii F0264]
          Length = 760

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 56/250 (22%), Positives = 92/250 (36%), Gaps = 24/250 (9%)

Query: 26  TLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
             ++  G   A   L+  +       +  KA A     VL +G PG GKT LA+ VA E 
Sbjct: 194 KFDDVAGVDGAKEELREVVDFLKNPEKYTKAGARVPKGVLLLGRPGTGKTLLAKAVAGES 253

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           G +F + SG           A  +  L    +     ++FIDEI  +             
Sbjct: 254 GASFYTISGSEFVEMFVGVGASRVRDLFEKAKSSTPSIIFIDEIDAIGRRRSTGKNSGSN 313

Query: 131 D---FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           D     L+ ++ E     +      +  +IAAT R  +L   L    RF   I+++  ++
Sbjct: 314 DEREQTLNQLLVEMDGFETDT----KVIVIAATNREDILDPALLRAGRFDRRIQVDAPDL 369

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           +    I++  AK   LA   +      +           LL      A    + TI  E 
Sbjct: 370 QGRIAILKVHAKNKKLAADVKLEDIAKITPGFVGADLANLLNEAAILAARKSSDTIVMED 429

Query: 246 ADAALLRLAI 255
            D A+ ++ +
Sbjct: 430 LDEAVDKIGM 439


>gi|209962466|gb|ACJ02102.1| SPATA5 [Salmo salar]
          Length = 418

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/176 (23%), Positives = 69/176 (39%), Gaps = 26/176 (14%)

Query: 20  SLLR------PR-TLEEFTGQVEACSNLKVFIEAAKARAEALDHV--------LFVGPPG 64
           S +R      P+    +  G  +    LK  +E      EA   +        L  GPPG
Sbjct: 219 SAMREVAIDVPKVRWSDVGGMEQVKLKLKQAVEWPLRHPEAFTRMGIQPPKGVLLYGPPG 278

Query: 65  LGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLEDR------DVLFIDEIHR 116
             KT +A+ +A E G+NF +  GP +     G+    +  L  +       ++F DEI  
Sbjct: 279 CSKTMIAKALANESGLNFLAIKGPELLSKYVGESERAVRELFRKARAVAPSIVFFDEIDA 338

Query: 117 LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           L+    E    +      D ++ +  +       L   T++AAT R  ++  PL +
Sbjct: 339 LAG---ERGSSSGSGGVGDRVLAQLLTEMDGIEQLRDVTVLAATNRPDMIDKPLTE 391


>gi|294944253|ref|XP_002784163.1| 26S proteosome regulatory subunit, putative [Perkinsus marinus ATCC
           50983]
 gi|239897197|gb|EER15959.1| 26S proteosome regulatory subunit, putative [Perkinsus marinus ATCC
           50983]
          Length = 601

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/184 (22%), Positives = 69/184 (37%), Gaps = 17/184 (9%)

Query: 23  RPRT---LEEFTGQVEACSNLK---VFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76
           RP T   LE+   Q E    L+     I  AK       H++  GPPG GKT  A+ +AR
Sbjct: 318 RPATTNMLEKIVLQQELAERLQWTTNSIINAKKNGTPFRHLMLYGPPGTGKTLFARTLAR 377

Query: 77  ELGVNFRSTSG--------PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPA 128
           + G+++   +G          + +   L A     +   +LFIDE           +  +
Sbjct: 378 QSGLDYAIMTGGDVGPLGKDAVDEMNRLFAWANTSKKGLILFIDEADAFLRR--GRMSSS 435

Query: 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDL 188
               +    V     A +   N  +F ++ AT    +L   + DR          E +  
Sbjct: 436 SNMSEDTRNVLSAFLAHTGTEN-DKFMVVLATNVREVLDRAVLDRVDEQFEFPLPEFDQR 494

Query: 189 KTIV 192
           + ++
Sbjct: 495 RQML 498


>gi|296803659|ref|XP_002842682.1| ribosome biogenesis ATPase RIX7 [Arthroderma otae CBS 113480]
 gi|238846032|gb|EEQ35694.1| ribosome biogenesis ATPase RIX7 [Arthroderma otae CBS 113480]
          Length = 743

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 52/242 (21%), Positives = 92/242 (38%), Gaps = 20/242 (8%)

Query: 47  AKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGDLAALLTNLE 104
           ++    A   VL  GPPG GKT LA+ VA E   NF S  GP +     G+    +  + 
Sbjct: 509 SRVGISAPTGVLLWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESERAVRQVF 568

Query: 105 DRD------VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIA 158
            R       V+F DE+  L    ++ +  A       L+        S         +IA
Sbjct: 569 SRARSSIPCVIFFDELDALVPRRDDTMSEASARVVNTLLTELDGLGSSRNG----IYVIA 624

Query: 159 ATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSR 216
           AT R  ++   +    R    + +N    ++   +++   +   + +T++          
Sbjct: 625 ATNRPDIIDPAMLRPGRLETLLFVNLPGRDERAEVLRTLIRKLPIEMTEQLVELARSCEG 684

Query: 217 GTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFG 276
            +    G LLRR   ++ +    TI  E   AA   +          D++    + +++G
Sbjct: 685 FSGADLGSLLRRA-GYSAIKRKDTIRFEDFVAAKQEIRP-----SVTDMKKYESLKKDWG 738

Query: 277 GG 278
           GG
Sbjct: 739 GG 740



 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 75/226 (33%), Gaps = 19/226 (8%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------VLFVGPPGLGKTTLAQVVARE 77
           +L +  G  +    L+  I     R +            VL  GPPG GKT +A   A E
Sbjct: 174 SLADLGGVDDIIQQLEELIVLPMTRPQIFSSSNVQPPRGVLLHGPPGCGKTMIANAFAAE 233

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
           LGV F + S P I           L       +     ++F+DEI  ++    E     M
Sbjct: 234 LGVPFIAISAPSIISGMSGESEKALRDHFEEAKKVAPCLIFMDEIDAITPKR-ESAQREM 292

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
           E   +  ++         K +     ++AAT R   L   L+   RF   I L       
Sbjct: 293 EKRIVAQLLTCMDDLALAKTDGKPVIVLAATNRPDSLDPALRRGGRFDKEINLTVPNEPV 352

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233
            + I++   K   LA   +        +         L+      A
Sbjct: 353 REQILRTLTKDMNLADDLDFKFLAKGTAGFVGADLNDLVSTAATAA 398


>gi|149915624|ref|ZP_01904150.1| ATP-dependent metalloprotease FtsH [Roseobacter sp. AzwK-3b]
 gi|149810516|gb|EDM70359.1| ATP-dependent metalloprotease FtsH [Roseobacter sp. AzwK-3b]
          Length = 641

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 53/249 (21%), Positives = 93/249 (37%), Gaps = 23/249 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  EA   L+  +E        ++   +     L VGPPG GKT LA+ +A E 
Sbjct: 152 TFDDVAGIDEAKEELEEIVEFLRNPQKFSRLGGKIPKGALLVGPPGTGKTLLARAIAGEA 211

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F + SG       V   A  +  +    +     ++FIDEI  +            +
Sbjct: 212 GVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKNAPCIVFIDEIDAVGRHRGAGYGGGND 271

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E     + +       +IAAT R  +L   L    RF   I +   +I+
Sbjct: 272 EREQTLNQLLVEMDGFEANEG----VIIIAATNRKDVLDPALLRPGRFDRQITVPNPDIK 327

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I+   A+ T L    +           +      L+      A     + +T E  
Sbjct: 328 GREKILGVHARKTPLGPDVDLRIIARGTPGFSGADLANLVNEAALMAARVGRRFVTMEDF 387

Query: 247 DAALLRLAI 255
           + A  ++ +
Sbjct: 388 ENAKDKVMM 396


>gi|146448775|gb|ABQ41382.1| cell division cycle 48 [Paralichthys olivaceus]
          Length = 806

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 70/197 (35%), Gaps = 20/197 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEAL--------DHVLFVGPPGLGKTTLAQVVARE 77
           T E+  G  +    L+  ++      +            VLF GPPG GKT LA+ +A E
Sbjct: 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 534

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
              NF S  GP +          ++  +          VLF DE+  ++           
Sbjct: 535 CQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGN--VGD 592

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
                D ++ +  +      +     +I AT R  ++   +    R    I +   + + 
Sbjct: 593 GGGAADRVINQILTEMDGMSSKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKS 652

Query: 188 LKTIVQRGAKLTGLAVT 204
             +I++   + + ++  
Sbjct: 653 RMSILKANLRKSPISKD 669



 Score = 53.2 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 49/266 (18%), Positives = 88/266 (33%), Gaps = 32/266 (12%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAEALDH--------------VLFVGPPGLGKTTLA 71
           +L E  G  +     K   +  +     L H              +L  GPPG GKT +A
Sbjct: 197 SLNE-VGYDDIGGVRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255

Query: 72  QVVARELGVNFRSTSGPVI------AKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEE 123
           +  A E G  F   +GP I          +L       E     ++FIDE+  ++   E+
Sbjct: 256 RAAANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK 315

Query: 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLN 181
                        +V +  +        +   ++AAT R   +   L+   RF   + + 
Sbjct: 316 -----THGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIG 370

Query: 182 FYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241
             +      I+Q   K   LA  D    ++A  + G        L       +    K  
Sbjct: 371 IPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADLAAL-CSEAALQAIRKKMD 428

Query: 242 TREIADAALLRLAIDKMGFDQLDLRY 267
             ++ D  +    ++ +     D ++
Sbjct: 429 LIDLEDETIDAEVMNSLAVTMDDFKW 454


>gi|88808710|ref|ZP_01124220.1| cell division protein FtsH4 [Synechococcus sp. WH 7805]
 gi|88787698|gb|EAR18855.1| cell division protein FtsH4 [Synechococcus sp. WH 7805]
          Length = 620

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 55/247 (22%), Positives = 90/247 (36%), Gaps = 19/247 (7%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
             E+  G  EA   L+  +   K         A     VL VGPPG GKT LA+ +A E 
Sbjct: 156 RFEDVAGIAEAKDELQEVVTFLKQPETFIQLGARIPRGVLLVGPPGTGKTLLAKAIAGEA 215

Query: 79  GVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F S +            A  +  L    +++   ++FIDEI  +       +    +
Sbjct: 216 GVPFFSLAASEFVELFVGVGASRVRDLFRKAKEKSPCIVFIDEIDAVGRQRGAGIGGGND 275

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
           + +  L   +  +      + S   L+AAT R  +L   L    RF   I +   + +  
Sbjct: 276 EREQTL--NQLLTEMDGFADNSGVILLAATNRADVLDTALMRPGRFDRRIAVGLPDRKGR 333

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           + I+   A+   LA     A         +      LL           + T+  +  + 
Sbjct: 334 EAILAVHARTRPLAEEVSLADWARRTPGFSGADLANLLNEAAILTARHQSTTLGNKELEM 393

Query: 249 ALLRLAI 255
           AL R+ +
Sbjct: 394 ALERITM 400


>gi|326496172|dbj|BAJ90707.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 351

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 63/284 (22%), Positives = 103/284 (36%), Gaps = 35/284 (12%)

Query: 1   MMDREGLLSRNVSQEDADISLLRPRT----LEEFTGQVEACSNL-------KVFIEAAKA 49
           MM     L R +S         RPR      ++  G  EA   L       +  +   K 
Sbjct: 36  MM---WFLQRQMSSGGNADKRRRPRKQQVGFDDVQGVDEAKEELVEIVSCLRGSLNYKKL 92

Query: 50  RAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLTNL 103
            A     VL  GPPG GKT LA+ VA E G+ F S S            A  +  L    
Sbjct: 93  GARLPRGVLLAGPPGTGKTLLAKAVAGEAGIPFFSVSASEFVEMFVGRGAARVRDLFKEA 152

Query: 104 ED--RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATT 161
           ++    ++FIDE+  +        +    D  L+ ++ E     S      +  ++AAT 
Sbjct: 153 KEAAPSIIFIDELDAVGGSR-GRSFNDERDQTLNQLLTEMDGFDSDV----KVIVMAATN 207

Query: 162 RVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTP 219
           R   L + L    RF   + +   ++E  + I+     L  + + +++     + +  TP
Sbjct: 208 RPKALDSALCRPGRFSRKVFVGVPDLEGRRKIL--AVHLRKVPLEEDSEIICDLVANVTP 265

Query: 220 RIAGRLLRRVRD----FAEVAHAKTITREIADAALLRLAIDKMG 259
            + G  L  + +     A       + RE    A+ R      G
Sbjct: 266 GLVGADLANIVNEAALLAARRGGDIVAREDIMDAIEREKYRVNG 309


>gi|288560385|ref|YP_003423871.1| replication factor C large subunit RfcL [Methanobrevibacter
           ruminantium M1]
 gi|288543095|gb|ADC46979.1| replication factor C large subunit RfcL [Methanobrevibacter
           ruminantium M1]
          Length = 530

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 82/214 (38%), Gaps = 33/214 (15%)

Query: 18  DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE 77
            +   RP+T +E  G  +    ++ ++++ +        +L +GP G GKTT+A ++A E
Sbjct: 3   WVDKYRPKTFKEVVGNNKQKKVIEDWLQSWQD-GNPQKPLLLIGPAGTGKTTIAHIIANE 61

Query: 78  L---------GVNFRSTSGPVIAKAGDLAALLTNLEDRDVL-FIDEIH---------RLS 118
                         +      I ++    +L    +   ++  +D IH          L+
Sbjct: 62  FSEYIELNASDKRSQDVLMSTIGESATTKSLFGENKKLIIMDEVDGIHGTNDRGGTSALN 121

Query: 119 IIVEEILYPAM---EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFG 175
            I++    P +    DF  + +     +A+ +K++      I A T    L + +    G
Sbjct: 122 KIIKNSKQPIVMMANDFYSNKLTTIKKNAQVIKMD-----KIRAPTINKFLRDVVLKNEG 176

Query: 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAAC 209
           I +     + + L  + +R +     A+    A 
Sbjct: 177 IEV-----DPDVLMKLSKRSSGDLRSAINTLQAL 205


>gi|225849953|ref|YP_002730187.1| cell division protease FtsH [Persephonella marina EX-H1]
 gi|225645469|gb|ACO03655.1| cell division protease FtsH [Persephonella marina EX-H1]
          Length = 627

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 60/277 (21%), Positives = 104/277 (37%), Gaps = 27/277 (9%)

Query: 26  TLEEFTGQVEACSNLKVFI-------EAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
            L++  G  E    +K  I          K    A   +L  G PG+GKT LA+ +A E 
Sbjct: 151 KLDDVAGMDEVKEEVKELIDYLKEPQRFQKLGGRAPKGILLYGDPGVGKTLLAKAIAGEA 210

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEI-LYPAM 129
            V F S SG       V   A  +  L    +     ++FIDEI  +      +      
Sbjct: 211 NVPFISISGSDFVEMFVGVGAARVRDLFETAKKHAPCLVFIDEIDAVGRARSGVGFGGGH 270

Query: 130 EDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           ++ +  L  ++ E     S +       +IAAT R  +L   L    RF   I +   ++
Sbjct: 271 DEREQTLNQLLVELDGFDSSEG----IIVIAATNRPDILDPALLRPGRFDRQISVPKPDV 326

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           +    I++   K   + + D+   ++ + +RGTP  +G  L  V + A +  A+    ++
Sbjct: 327 KGRYEILKVHVKKKNIPLGDD--VDLMVIARGTPGFSGADLANVVNEAALLAARRRKEKV 384

Query: 246 ADAAL-LRLAIDKMGFDQLDLRYLTMIARNFGGGPVG 281
                   +    MG ++  +              VG
Sbjct: 385 GMREFEDAMDRIMMGLERKGMAITPAEKEKIAYHEVG 421


>gi|165924052|ref|ZP_02219884.1| ATP-dependent metallopeptidase HflB [Coxiella burnetii RSA 334]
 gi|165916511|gb|EDR35115.1| ATP-dependent metallopeptidase HflB [Coxiella burnetii RSA 334]
          Length = 650

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 51/247 (20%), Positives = 92/247 (37%), Gaps = 19/247 (7%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAK-------ARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  EA   +K  +E  +          +    VL VGPPG GKT LA+ VA E 
Sbjct: 154 TFDDVAGVDEAKEEVKELVEFLRDPGKFQRLGGKMPCGVLLVGPPGTGKTLLAKAVAGEA 213

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F + SG       V   A  +  +    + +   ++FIDEI  +       L    +
Sbjct: 214 KVPFFTISGSDFVEMFVGVGASRVRDMFDQAKKQAPCIIFIDEIDAVGRHRGAGLGGGHD 273

Query: 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL 188
           + +  L   +               ++AAT R  +L   L    RF   + +   +I+  
Sbjct: 274 EREQTL--NQLLVEMDGFEGKEGIIVMAATNRPDVLDPALLRPGRFDRQVVVPLPDIKGR 331

Query: 189 KTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADA 248
           + I++       LA   +A+         +      ++     FA   + K ++    + 
Sbjct: 332 EYILKVHMNKLPLAKDVKASVIARGTPGFSGADLANIVNEAALFAARENKKDVSMSEFER 391

Query: 249 ALLRLAI 255
           A  ++ +
Sbjct: 392 AKDKIMM 398


>gi|150399700|ref|YP_001323467.1| proteasome-activating nucleotidase [Methanococcus vannielii SB]
 gi|166199294|sp|A6UQT3|PAN_METVS RecName: Full=Proteasome-activating nucleotidase; Short=PAN;
           AltName: Full=Proteasomal ATPase; AltName:
           Full=Proteasome regulatory ATPase; AltName:
           Full=Proteasome regulatory particle
 gi|150012403|gb|ABR54855.1| 26S proteasome subunit P45 family [Methanococcus vannielii SB]
          Length = 407

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 50/235 (21%), Positives = 89/235 (37%), Gaps = 16/235 (6%)

Query: 48  KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------AKAGDLAALLT 101
           K        VL  GPPG GKT LA+ VARE   +F    G  +        A  +  +  
Sbjct: 176 KVGIVPPKGVLLYGPPGTGKTLLAKAVARETNASFVRVVGSELVKKFIGEGAKLVRDVFK 235

Query: 102 NLEDRD--VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA 159
             +++   ++FIDEI  ++    E L     D ++   + +  +      +     +IAA
Sbjct: 236 LAKEKSPCIIFIDEIDAVASKRTESL--TGGDREVQRTLMQLLAEMDGFDSRGDVKIIAA 293

Query: 160 TTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRG 217
           T R  +L   +    RF   I +   + +    I +       +   D    EIA  +  
Sbjct: 294 TNRPDILDPAILRPGRFDRIIEIAAPDEDGRLEIFKIHTDKMNIKSVD--LREIAKMAEN 351

Query: 218 TPRIAGR-LLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMI 271
                 + +      FA     + +T +    ALL++   K   ++  + +LT +
Sbjct: 352 MVGADIKAVCTEAGMFAIREGREYVTTKDFKEALLKVTGKKEKSEE-GIAHLTTM 405


>gi|118444920|ref|YP_878860.1| ATP-dependent protease La [Clostridium novyi NT]
 gi|118135376|gb|ABK62420.1| ATP-dependent protease La [Clostridium novyi NT]
          Length = 771

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 54/288 (18%), Positives = 108/288 (37%), Gaps = 37/288 (12%)

Query: 13  SQEDADISLLRPRTLE-EFTGQVEACSNLKVFIEAAKARAEAL--DHVLFVGPPGLGKTT 69
           ++++ DI   R + LE E  G  +    +  F+ A K+ + +L    +  VGPPG+GKT+
Sbjct: 304 TKDNLDIKRAR-QILENEHYGLEDVKDRIIEFL-AVKSVSNSLKGPILCLVGPPGVGKTS 361

Query: 70  LAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL----------------EDRDVLFIDE 113
           +A+ +A  L  NF   S   +    ++                           +  +DE
Sbjct: 362 IARSIANALNRNFVRMSLGGVRDEAEIRGHRKTYVGAIPGRIVYSMKEAKSKNPLFLLDE 421

Query: 114 IHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVK----INLSRFTLIAATTRVGLLTNP 169
           I +LS    +            L   +  + R       ++LS    I     +  +  P
Sbjct: 422 IDKLSG---DFRGDPASALLEVLDTEQNKTFRDHYLELDLDLSDVMFITTANSLDTIPRP 478

Query: 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           L DR  + I ++ Y  E+   I +R          ++   E  + ++      G + + V
Sbjct: 479 LLDRMEV-IEVSGYTTEEKFQIAKRHL-------INKQLEEHGITNKKISFSDGAIYKIV 530

Query: 230 RDFAEVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGG 277
            D+   +  + + R+IA   L +   + +  ++  +       R + G
Sbjct: 531 EDYTRESGVRNLNRKIAT-TLRKCIAEMLEKNKKSVNITANQIRKYLG 577


>gi|28212045|ref|NP_782989.1| cell division protein ftsH [Clostridium tetani E88]
 gi|28204488|gb|AAO36926.1| cell division protein ftsH [Clostridium tetani E88]
          Length = 624

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 59/259 (22%), Positives = 103/259 (39%), Gaps = 27/259 (10%)

Query: 26  TLEEFTGQVEACSNL----KVFIEAAKARA---EALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ EA  +L         + K      +     L VGPPG GKT LA+ VA E 
Sbjct: 169 TFKDVAGQEEAKESLMEIVDFLHNSDKYTGIGAKLPKGALLVGPPGTGKTLLAKAVAGEA 228

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVE-EILYPAM 129
            V F S SG       V   A  +  L    +++   ++FIDEI  +    +  +     
Sbjct: 229 KVPFFSISGSGFVEMFVGMGAARVRDLFEQAQEKAPCIIFIDEIDAIGKSRDGHVSGNDE 288

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
            +  L+ ++ E     S K       ++AAT R  +L   L    RF   + ++  +++ 
Sbjct: 289 REQTLNQLLAEMDGFDSSKG----VVILAATNRPEVLDKALLRPGRFDRRVIVDRPDLKG 344

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            + I++  AK   +        ++   ++ TP   G  L  + + A +   K    ++  
Sbjct: 345 REEILKVHAKGVKMDEK----VDLTSIAKATPGAVGADLANIINEAALRAVKINRDKVFQ 400

Query: 248 AALLR-LAIDKMGFDQLDL 265
             L   + I   G ++ D 
Sbjct: 401 GDLEEAVEIIIAGKEKKDR 419


>gi|32475717|ref|NP_868711.1| MoxR-related protein [Rhodopirellula baltica SH 1]
 gi|32446260|emb|CAD76088.1| MoxR-related protein [Rhodopirellula baltica SH 1]
          Length = 359

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 66/186 (35%), Gaps = 33/186 (17%)

Query: 30  FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPV 89
             GQ +    L +   A  AR     H L  G PGL KT + + +A  + ++FR      
Sbjct: 51  VVGQSDVIEQLLI---AILARG----HCLLEGVPGLAKTLMVRTLASSMNLDFRRIQFTP 103

Query: 90  IAKAGDLA-----ALLTNLEDRDVLF-----------IDEIHRLSIIVEEILYPAMEDFQ 133
               GD+              R++LF            DEI+R     +  L  AM++ +
Sbjct: 104 DLMPGDITGTDIIQEDHETGRREMLFRPGPVFTQMLLADEINRTPPKTQAALLEAMQEHE 163

Query: 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPL----QDRFGIPIRLNFYEIEDLK 189
           +          ++  +    F L          T PL    +DRF   + + +   +   
Sbjct: 164 VT------AGGKTYALKEPFFVLATQNPIEQEGTYPLPEAQRDRFLFHVVVGYPSRDQEA 217

Query: 190 TIVQRG 195
            IV+R 
Sbjct: 218 EIVERT 223


>gi|67610162|ref|XP_667086.1| replication factor C3 [Cryptosporidium hominis TU502]
 gi|54658182|gb|EAL36856.1| replication factor C3 [Cryptosporidium hominis]
          Length = 377

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/239 (17%), Positives = 83/239 (34%), Gaps = 37/239 (15%)

Query: 17  ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA- 75
             +   RP  L++     +  + ++ FI + +     L H+LF GPPG GKT+    ++ 
Sbjct: 7   PWVEKYRPSGLQDLLSHKDIINTIEKFISSGQ-----LPHLLFHGPPGTGKTSTIHAISK 61

Query: 76  --------------RELGVNFRSTSGPVIAKAGDLAALLTNLEDRD---VLFID--EIHR 116
                                 +     I    + A+   N        + +I+  ++  
Sbjct: 62  CIYKDRKYQMVLELNASDDRGINVVRDAIKSFSESASTTLNHSGGTNSNIEYIEMSDVST 121

Query: 117 LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSR--------FTLIAATTRVGLLTN 168
            ++   + L    E+ +L ++        + ++ L R                 V  +T 
Sbjct: 122 RNLDCNKSL---CENIKLIILDEADMMTSTAQMALRRIMERYSEHVRFCIICNYVNKITP 178

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227
            LQ R     R +   IED++  +   A    + VT E    +   SRG  R    +L+
Sbjct: 179 ALQSRC-TRFRFSPLPIEDIRNRISEIALSERIFVTREGQESLIKSSRGDMRKVLNVLQ 236


>gi|317014129|gb|ADU81565.1| DNA polymerase III subunits gamma and tau [Helicobacter pylori
           Gambia94/24]
          Length = 579

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 78/256 (30%), Gaps = 59/256 (23%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA------- 75
           RP+   E  GQ      L + ++  +         LF G  G GKT+ +++ A       
Sbjct: 9   RPKHFSELVGQESVAKTLSLALDNQRLANAY----LFSGLRGSGKTSSSRIFARALMCET 64

Query: 76  -----------------RELGVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFID 112
                                ++     G       D+  L+             +  ID
Sbjct: 65  GPKAVPCDTCIQCQSALNNHHIDIIEMDGASNRGIDDVRNLIEQTRYKPSFGRYKIFIID 124

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H  +      L   +E+                    S    + ATT    L   +  
Sbjct: 125 EVHMFTTEAFNALLKTLEE------------------PPSHVKFLLATTDALKLPATILS 166

Query: 173 R---FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           R   F          I  LKTI++       ++    A  ++A   +G+ R    LL + 
Sbjct: 167 RTQHFRFKKIPENSVISHLKTILE----KEQVSYESSALEKLAHSGQGSLRDTITLLEQA 222

Query: 230 RDFAEVAHAKTITREI 245
            ++ + A  ++   E+
Sbjct: 223 INYCDNAITESKVAEM 238


>gi|331242462|ref|XP_003333877.1| cell division cycle protein 48 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309312867|gb|EFP89458.1| cell division cycle protein 48 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 795

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 56/257 (21%), Positives = 86/257 (33%), Gaps = 25/257 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARE 77
           TL +  G       L   I       E         +  +L  GPPG GKT LA  +A +
Sbjct: 139 TLSDLGGIDGTVERLLELIGLPILHPEIFEFTGLKPIRGLLLCGPPGCGKTMLANAIANQ 198

Query: 78  LGVNFRSTSGPVI------AKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM 129
           LGV   + S   I           +  +      +   +LFIDEI  ++    E     M
Sbjct: 199 LGVRLINVSSTSIVSGMSGESEKAIRDIFEQATKQAPCLLFIDEIDAITPKR-ETAQREM 257

Query: 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIED 187
           E   +  ++         K +     +I AT R   L   L+   RF   I +   +   
Sbjct: 258 ERRIVAQLLTCLDDLSLEKTDGKPVIVIGATNRPDSLDPALRRGGRFDHEILMGVPDEAA 317

Query: 188 LKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247
            + I+    ++    +    + +    +R TP   G  L  +   A V   K I      
Sbjct: 318 REQIL----RVLCSKLKLVDSFDYKQLARSTPGYVGADLTALTASAGVIAIKRIFEPDTK 373

Query: 248 AALLRLAIDKMGFDQLD 264
               +L  D M  D  D
Sbjct: 374 P--DKLPDDNMIIDLTD 388



 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 44/176 (25%), Positives = 68/176 (38%), Gaps = 15/176 (8%)

Query: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI--------AKAGDLAALLTNLEDRDV 108
           VL  GPPG GKT +A+ VA E   NF S  GP +         KA     +        +
Sbjct: 515 VLLWGPPGCGKTLVAKAVANESQANFISVKGPELLNKYVGESEKAVRQVFIRARASAPCI 574

Query: 109 LFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168
           +F DE+  L    ++ L  +       L+          +I      +I AT R   + +
Sbjct: 575 IFFDELDALVPRRDDSLSESSSRVVNTLLTELDGLEPRKQI-----YVIGATNR-PDVMD 628

Query: 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMR-SRGTPRIAG 223
           P   R G   ++ F ++ D +   +    L+     D  A E   +  +  PR AG
Sbjct: 629 PAMVRPGRLDKMIFIDLPDRQDRWEIFKTLSSKLTFDSPASEAIQKLIQDDPRCAG 684


>gi|257068458|ref|YP_003154713.1| membrane protease FtsH catalytic subunit [Brachybacterium faecium
           DSM 4810]
 gi|310943121|sp|C7MC16|FTSH_BRAFD RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|256559276|gb|ACU85123.1| membrane protease FtsH catalytic subunit [Brachybacterium faecium
           DSM 4810]
          Length = 704

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 65/249 (26%), Positives = 102/249 (40%), Gaps = 28/249 (11%)

Query: 24  PR-TLEEFTGQVEACSNL----KVFIEAAKARA---EALDHVLFVGPPGLGKTTLAQVVA 75
           P+ T  +  G  EA   L    +  ++  + +A   +    VL  GPPG GKT LA+ VA
Sbjct: 172 PKVTFADVAGADEAVEELDEIKQFLVDPGRYQAVGAKIPKGVLLYGPPGTGKTLLAKAVA 231

Query: 76  RELGVNFRSTSGP------VIAKAGDLAALLTNLEDR--DVLFIDEIHRLSIIVEEILYP 127
            E  V F S SG       V   A  +  L    ++    ++FIDEI  +       +  
Sbjct: 232 GEANVPFYSISGSDFVEMFVGVGASRVRDLFNTAKENAPAIIFIDEIDAVGRHRGAGMGG 291

Query: 128 AMEDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183
             ++ +  L  M+ E       +       LIAAT RV +L   L    RF   I +   
Sbjct: 292 GHDEREQTLNQMLVEMDGFEENQ----NVILIAATNRVDILDPALLRPGRFDRQIGVEAP 347

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           +++    I+   AK   LA  D     +A R+     ++G  L  V + A +  A++  +
Sbjct: 348 DLKGRLHILGVHAKGKPLA-HDVDLEAVAKRA---IGMSGADLANVLNEAALLTARSGNQ 403

Query: 244 EIADAALLR 252
            I + AL  
Sbjct: 404 IIDNRALDE 412


>gi|269121222|ref|YP_003309399.1| ATP-dependent metalloprotease FtsH [Sebaldella termitidis ATCC
           33386]
 gi|268615100|gb|ACZ09468.1| ATP-dependent metalloprotease FtsH [Sebaldella termitidis ATCC
           33386]
          Length = 682

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 56/250 (22%), Positives = 92/250 (36%), Gaps = 25/250 (10%)

Query: 26  TLEEFTGQVEACSNLKVFIEAA-------KARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
             ++  G  EA   LK  +E         KA A     VL +G PG GKT LA+ VA E 
Sbjct: 200 KFDDVAGVDEAKEELKEIVEFLRNPEKFTKAGARVPKGVLLLGRPGTGKTLLAKAVAGES 259

Query: 79  GVNFRSTSGPVI---------AKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129
           G +F S SG            ++  DL           ++FIDEI  +        +   
Sbjct: 260 GASFFSISGSEFVEMFVGVGASRVRDLFEKAKKSRP-AIIFIDEIDAVGRKRGTGKHGGN 318

Query: 130 EDFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEI 185
           ++ +  L  ++ E     + +    +  ++AAT R  +L   L    RF   I ++  ++
Sbjct: 319 DEREQTLNQLLVEMDGFETDE----KIIVVAATNREDVLDPALLRAGRFDRRISVDAPDV 374

Query: 186 EDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREI 245
           +    I++  AK   LA   +      +           LL      A       I    
Sbjct: 375 QGRIAILEVHAKNKKLADDVKLEDIAKITPGFVGADLENLLNEAAILAAREGRDVINMGD 434

Query: 246 ADAALLRLAI 255
            D A+ ++ +
Sbjct: 435 LDEAVDKIGM 444


>gi|254451539|ref|ZP_05064976.1| cell division protein FtsH [Octadecabacter antarcticus 238]
 gi|198265945|gb|EDY90215.1| cell division protein FtsH [Octadecabacter antarcticus 238]
          Length = 639

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 57/245 (23%), Positives = 101/245 (41%), Gaps = 27/245 (11%)

Query: 26  TLEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  G  EA   L+  +E        ++   +     L VGPPG GKT LA+ +A E 
Sbjct: 152 TFDDVAGIDEAKEELEEIVEFLRNPQKFSRLGGKIPKGALLVGPPGTGKTLLARAIAGEA 211

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
           GV F + SG       V   A  +  +    +     ++FIDEI  +       +    +
Sbjct: 212 GVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKNAPCIIFIDEIDAVGRARGVGMGGGND 271

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  ++ E     + +       +IAAT R  +L   L    RF   + +   +I+
Sbjct: 272 EREQTLNQLLVEMDGFEANEG----VIIIAATNRKDVLDPALLRPGRFDRQVTVGNPDIK 327

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I+   A+ T L        ++ + +RG+P  +G  L  + + A +  A+   R +A
Sbjct: 328 GREKILGVHARKTPLGPD----VDLRIIARGSPGFSGADLANLVNEAALTAARVGRRFVA 383

Query: 247 DAALL 251
            A   
Sbjct: 384 MADFE 388


>gi|190348776|gb|EDK41301.2| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
           6260]
          Length = 678

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 55/245 (22%), Positives = 94/245 (38%), Gaps = 37/245 (15%)

Query: 16  DADISLLRPRTLEEFTGQVEACSNLKVFIEAAK-------ARAEALDHVLFVGPPGLGKT 68
           D   S +R    E+  G  EA + L+  ++  K          +    VL  GPPG GKT
Sbjct: 211 DVSESTVR---FEDVCGCDEARAELEEIVDFLKDPARYTGLGGKLPKGVLLTGPPGTGKT 267

Query: 69  TLAQVVARELGVNFRSTSGPVIA------KAGDLAALLTNLEDRD--VLFIDEIHRL--- 117
            LA+  A E GV F   SG           A  +  L     ++   ++FIDE+  +   
Sbjct: 268 LLARATAGEAGVPFFFMSGSEFDELYVGVGAKRIRELFGQAREKSPAIIFIDELDAIGGK 327

Query: 118 -SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RF 174
            +   +     A     L+ ++ E           S   +I AT     L   L    RF
Sbjct: 328 RNPKDQ-----AYAKQTLNQLLVELDGFSQT----SGIIIIGATNFPESLDKALTRPGRF 378

Query: 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234
              + ++  ++     I++   K   ++       E ++ +RGTP ++G  L  + + A 
Sbjct: 379 DKEVVVDLPDVRGRVDILKHHMKNVEVSED----VEPSIIARGTPGLSGAELMNLVNQAA 434

Query: 235 VAHAK 239
           V  ++
Sbjct: 435 VHASQ 439


>gi|108563127|ref|YP_627443.1| DNA polymerase III subunits gamma and tau [Helicobacter pylori
           HPAG1]
 gi|107836900|gb|ABF84769.1| DNA polymerase III gamma and tau subunits [Helicobacter pylori
           HPAG1]
          Length = 572

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 77/256 (30%), Gaps = 59/256 (23%)

Query: 23  RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA------- 75
           RP+   E  GQ      L + ++  +         LF G  G GKT+ +++ A       
Sbjct: 9   RPKHFSELVGQESVAKTLSLALDNQRLANAY----LFSGLRGSGKTSSSRIFARALMCEE 64

Query: 76  -----------------RELGVNFRSTSGPVIAKAGDLAALLTN------LEDRDVLFID 112
                                ++     G       D+  L+             +  ID
Sbjct: 65  GPKAVPCDTCIQCQSALNNHHIDIIEMDGASNRGIDDVRNLIEQTRYKPSFGRYKIFIID 124

Query: 113 EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD 172
           E+H  +      L   +E+                    S    + ATT    L   +  
Sbjct: 125 EVHMFTTEAFNALLKTLEE------------------PPSHVKFLLATTDALKLPATILS 166

Query: 173 R---FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229
           R   F          I  LKTI++       ++    A  ++A   +G+ R    LL + 
Sbjct: 167 RTQHFRFKKIPENSVISHLKTILE----KEQVSYESSALEKLAHSGQGSLRDTITLLEQA 222

Query: 230 RDFAEVAHAKTITREI 245
            ++ + A  +    E+
Sbjct: 223 INYCDNAITEGKVAEM 238


>gi|91784537|ref|YP_559743.1| FtsH peptidase [Burkholderia xenovorans LB400]
 gi|296158195|ref|ZP_06841027.1| ATP-dependent metalloprotease FtsH [Burkholderia sp. Ch1-1]
 gi|91688491|gb|ABE31691.1| membrane protease FtsH catalytic subunit [Burkholderia xenovorans
           LB400]
 gi|295891531|gb|EFG71317.1| ATP-dependent metalloprotease FtsH [Burkholderia sp. Ch1-1]
          Length = 629

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 51/249 (20%), Positives = 89/249 (35%), Gaps = 23/249 (9%)

Query: 26  TLEEFTGQVEACSNLKVFIEAA-------KARAEALDHVLFVGPPGLGKTTLAQVVAREL 78
              +  G  EA   +   ++         K        VL VGPPG GKT LA+ +A E 
Sbjct: 152 NFTDVAGCDEAKEEVSELVDFLRDPQKFQKLGGRIPRGVLLVGPPGTGKTLLARAIAGEA 211

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAME 130
            V F S SG       V   A  +  +    +     ++FIDEI  +       +    +
Sbjct: 212 KVPFFSISGSDFVEMFVGVGAARVRDMFEQAKKHAPCIVFIDEIDAVGRHRGAGMGGGND 271

Query: 131 DFQLDL--MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186
           + +  L  M+ E     +     S   +IAAT R  +L   L    RF   + +   +I 
Sbjct: 272 EREQTLNQMLVEMDGFEAN----SGVIVIAATNRSDVLDKALLRPGRFDRQVYVGLPDIR 327

Query: 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246
             + I++   +   ++   +AA         +      L+     FA     + +     
Sbjct: 328 GREHIMKVHLRKVPISNDVDAAVIARGTPGFSGADLANLVNEAALFAARRGKRIVEMTDF 387

Query: 247 DAALLRLAI 255
           + A  ++ +
Sbjct: 388 EDAKDKIFM 396


>gi|322380162|ref|ZP_08054401.1| ATP-dependent C1p protease [Helicobacter suis HS5]
 gi|321147413|gb|EFX42074.1| ATP-dependent C1p protease [Helicobacter suis HS5]
          Length = 741

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/210 (20%), Positives = 79/210 (37%), Gaps = 37/210 (17%)

Query: 28  EEFTGQV----EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFR 83
           +E   Q     +  S +K+      A  + +   LFVGP G+GKT LA+V+A+ + ++  
Sbjct: 443 KEVFAQEIAISKLVSAIKIHASGLIATKKPVASFLFVGPSGVGKTELAKVLAKHMHLHLE 502

Query: 84  STSGPVIAKAGDLAALLTNL------------------EDRDVLFIDEIHRLSIIVEEIL 125
                   +A  ++ L+                       R VL +DEI +    + ++L
Sbjct: 503 RFDMSEYKEAHSISKLIGAPSGYVGFEQGGLLINAIRKHPRCVLLLDEIEKAHPNIYDLL 562

Query: 126 YPAMEDFQLDLMVG-EGPSARSVKINLSRF--------------TLIAATTRVGLLTNPL 170
               ++  L    G +G  + ++ I  S                T         LL+  L
Sbjct: 563 LQITDNASLTDNSGKKGDFSHAILILTSNAGSDALGQMGFLEDHTHKYQKALKELLSPEL 622

Query: 171 QDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200
           + R    +      +E+L++IVQ+  K   
Sbjct: 623 RSRLDAILTFKPLSLENLESIVQKEYKKLE 652


>gi|254882796|ref|ZP_05255506.1| metalloprotease FtsH [Bacteroides sp. 4_3_47FAA]
 gi|294778231|ref|ZP_06743657.1| ATP-dependent metallopeptidase HflB [Bacteroides vulgatus PC510]
 gi|319644311|ref|ZP_07998805.1| AAA-metalloprotease FtsH with ATPase domain-containing protein
           [Bacteroides sp. 3_1_40A]
 gi|254835589|gb|EET15898.1| metalloprotease FtsH [Bacteroides sp. 4_3_47FAA]
 gi|294447859|gb|EFG16433.1| ATP-dependent metallopeptidase HflB [Bacteroides vulgatus PC510]
 gi|317384206|gb|EFV65179.1| AAA-metalloprotease FtsH with ATPase domain-containing protein
           [Bacteroides sp. 3_1_40A]
          Length = 668

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 74/330 (22%), Positives = 126/330 (38%), Gaps = 62/330 (18%)

Query: 26  TLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVAREL 78
           T ++  GQ EA   ++  +E  K          +     L VGPPG GKT LA+ VA E 
Sbjct: 188 TFKDVAGQAEAKQEVEEIVEFLKQPQKYTELGGKIPKGALLVGPPGTGKTLLAKAVAGEA 247

Query: 79  GVNFRSTSGP------VIAKAGDLAALLTNLEDRD--VLFIDEIHRLSIIVEEILYPAM- 129
            V F S SG       V   A  +  L    +++   ++FIDEI  +     +   P+M 
Sbjct: 248 DVPFFSLSGSDFVEMFVGVGASRVRDLFRQAKEKAPCIIFIDEIDAVGRARGKN--PSMG 305

Query: 130 ----EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183
                +  L+ ++ E     S     S   ++AAT R  +L   L    RF   I ++  
Sbjct: 306 GNDERENTLNQLLTEMDGFGSN----SGVIILAATNRADILDKALLRAGRFDRQIHVDLP 361

Query: 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243
           ++ + K +      +    +  + + ++ + +R TP  +G  +  V              
Sbjct: 362 DLNERKEV----FGVHLKPLKLDESVDLDLLARQTPGFSGADIANV-------------- 403

Query: 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE-----D 298
              +AAL+     K    + D  +L  + R  GG     +      +E +  I       
Sbjct: 404 -CNEAALIAARHGKNAVGKQD--FLDAVDRIIGGLE---KKTKIMTAEEKRTIALHEAGH 457

Query: 299 LIEPYMIQQG--FIQRT--PRGRLLMPIAW 324
               + ++     I+ T  PRGR  +  AW
Sbjct: 458 ATLSWFLEHANPLIKVTIVPRGR-ALGAAW 486


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.315    0.133    0.363 

Lambda     K      H
   0.267   0.0405    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,413,688,095
Number of Sequences: 14124377
Number of extensions: 210696570
Number of successful extensions: 1027982
Number of sequences better than 10.0: 10000
Number of HSP's better than 10.0 without gapping: 23484
Number of HSP's successfully gapped in prelim test: 35662
Number of HSP's that attempted gapping in prelim test: 957396
Number of HSP's gapped (non-prelim): 76152
length of query: 334
length of database: 4,842,793,630
effective HSP length: 139
effective length of query: 195
effective length of database: 2,879,505,227
effective search space: 561503519265
effective search space used: 561503519265
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 81 (35.8 bits)